sample chr start end reference alt gene effect Amino_Acid_Change DNA_VAF SIFT PolyPhen TCGA-18-3406-01 10 104129063 104129063 C A GBF1 Silent p.I1022I 0.11 TCGA-18-3406-01 10 108923900 108923900 G T SORCS1 Silent p.R129R 0.24 TCGA-18-3406-01 10 114575205 114575205 G A VTI1A 3'UTR 0.29 TCGA-18-3406-01 10 124712423 124712423 C G C10orf88 Missense_Mutation p.R97T 0.06 deleterious(0) probably_damaging(0.997) TCGA-18-3406-01 10 129903515 129903515 A C MKI67 Missense_Mutation p.L2197V 0.17 deleterious(0.05) possibly_damaging(0.696) TCGA-18-3406-01 10 59956140 59956140 C G IPMK Missense_Mutation p.K316N 0.32 tolerated(0.26) benign(0.055) TCGA-18-3406-01 10 70513624 70513624 G C CCAR1 Missense_Mutation p.M378I 0.30 tolerated(0.17) benign(0.034) TCGA-18-3406-01 10 70775423 70775423 G A KIAA1279 Missense_Mutation p.A373T 0.21 tolerated(0.29) benign(0.253) TCGA-18-3406-01 10 88703344 88703344 C T MMRN2 Silent p.E399E 0.22 TCGA-18-3406-01 10 98469674 98469674 A T PIK3AP1 Missense_Mutation p.L27Q 0.19 deleterious(0) probably_damaging(0.998) TCGA-18-3406-01 11 107299540 107299540 T C CWF19L2 Missense_Mutation p.K473R 0.11 tolerated(0.09) benign(0.017) TCGA-18-3406-01 11 120198201 120198201 C T TMEM136 Silent p.L39L 0.31 TCGA-18-3406-01 11 120352085 120352085 C G ARHGEF12 Missense_Mutation p.H1452D 0.14 tolerated_low_confidence(0.1) benign(0.001) TCGA-18-3406-01 11 121440877 121440877 C G SORL1 Missense_Mutation p.L1079V 0.12 tolerated(0.16) possibly_damaging(0.633) TCGA-18-3406-01 11 123995012 123995012 A G VWA5A Silent p.R411R 0.14 TCGA-18-3406-01 11 124121210 124121210 C T OR8G1 Intron 0.32 TCGA-18-3406-01 11 124440254 124440254 A G OR8A1 Missense_Mutation p.K97R 0.31 deleterious(0.03) benign(0.167) TCGA-18-3406-01 11 1266003 1266003 A T MUC5B Silent p.P2631P 0.16 TCGA-18-3406-01 11 1311618 1311618 C T TOLLIP Missense_Mutation p.G69S 0.26 deleterious(0) probably_damaging(1) TCGA-18-3406-01 11 1619128 1619128 C G KRTAP5-2 Missense_Mutation p.C118S 0.16 deleterious_low_confidence(0) unknown(0) TCGA-18-3406-01 11 20907010 20907010 A G NELL1 Missense_Mutation p.D176G 0.28 tolerated(0.31) benign(0.263) TCGA-18-3406-01 11 4936660 4936660 G A OR51G2 Silent p.L78L 0.09 TCGA-18-3406-01 11 5344621 5344621 G T OR51B2 Missense_Mutation p.R303S 0.27 deleterious(0.02) benign(0.024) TCGA-18-3406-01 11 5444070 5444070 C G OR51Q1 Missense_Mutation p.L214V 0.21 tolerated(0.45) benign(0.168) TCGA-18-3406-01 11 55761502 55761502 A T OR5F1 Silent p.S200S 0.11 TCGA-18-3406-01 11 56043843 56043843 T A OR5T1 Silent p.A243A 0.14 TCGA-18-3406-01 11 57466569 57466569 C T ZDHHC5 Missense_Mutation p.S554L 0.28 tolerated(0.13) benign(0.054) TCGA-18-3406-01 11 58893612 58893612 T C FAM111B Missense_Mutation p.I681T 0.24 deleterious(0) possibly_damaging(0.823) TCGA-18-3406-01 11 5905886 5905886 T A OR52E4 Missense_Mutation p.Y122N 0.09 deleterious(0) possibly_damaging(0.536) TCGA-18-3406-01 11 5906038 5906038 G T OR52E4 Silent p.G172G 0.15 TCGA-18-3406-01 11 611692 611692 C G PHRF1 Missense_Mutation p.A1621G 0.36 tolerated(0.06) probably_damaging(0.923) TCGA-18-3406-01 11 62574924 62574924 C T STX5 3'UTR 0.26 TCGA-18-3406-01 11 6262865 6262865 T A CNGA4 Nonsense_Mutation p.Y374* 0.32 TCGA-18-3406-01 11 6643179 6643179 C T DCHS1 Missense_Mutation p.G3243D 0.33 deleterious(0) probably_damaging(0.986) TCGA-18-3406-01 11 68201264 68201264 G A LRP5 Missense_Mutation p.E1320K 0.30 tolerated(0.42) benign(0.126) TCGA-18-3406-01 11 71724063 71724063 G A NUMA1 Nonsense_Mutation p.R1496* 0.16 TCGA-18-3406-01 11 71849986 71849986 T C FOLR3 Silent p.S92S 0.31 TCGA-18-3406-01 11 92088060 92088060 G A FAT3 Missense_Mutation p.D928N 0.20 probably_damaging(0.999) TCGA-18-3406-01 12 11081919 11081919 C A PRH2 Missense_Mutation p.A16D 0.12 deleterious_low_confidence(0) unknown(0) TCGA-18-3406-01 12 115114128 115114128 C T TBX3 Silent p.S363S 0.23 TCGA-18-3406-01 12 12278319 12278319 C T LRP6 Missense_Mutation p.G1454R 0.48 tolerated(0.12) probably_damaging(0.917) TCGA-18-3406-01 12 12291458 12291458 C T LRP6 Silent p.R1136R 0.23 TCGA-18-3406-01 12 124915226 124915226 G T NCOR2 Silent p.R330R 0.16 TCGA-18-3406-01 12 4460527 4460527 G C C12orf5 Missense_Mutation p.G122A 0.21 tolerated(0.09) possibly_damaging(0.85) TCGA-18-3406-01 12 49933230 49933230 C T KCNH3 Nonsense_Mutation p.Q11* 0.16 TCGA-18-3406-01 12 53448097 53448097 G C TENC1 Missense_Mutation p.D142H 0.38 deleterious(0) probably_damaging(1) TCGA-18-3406-01 12 53899577 53899577 C T TARBP2 Missense_Mutation p.R296C 0.13 deleterious(0.01) benign(0.112) TCGA-18-3406-01 12 54070001 54070001 G T ATP5G2 5'UTR 0.16 TCGA-18-3406-01 12 55356381 55356381 C G TESPA1 Missense_Mutation p.R434T 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.479) TCGA-18-3406-01 12 57857822 57857822 G A GLI1 Missense_Mutation p.M47I 0.25 tolerated(0.11) benign(0.002) TCGA-18-3406-01 12 58139669 58139669 A T TSPAN31 Missense_Mutation p.N69Y 0.20 deleterious(0.03) benign(0.011) TCGA-18-3406-01 12 7045484 7045484 C G ATN1 Missense_Mutation p.L352V 0.08 probably_damaging(0.973) TCGA-18-3406-01 12 71286540 71286540 C A PTPRR Silent p.P92P 0.25 TCGA-18-3406-01 12 72338230 72338230 C G TPH2 Missense_Mutation p.P138A 0.22 tolerated(0.34) benign(0.026) TCGA-18-3406-01 12 73015517 73015517 C A TRHDE Silent p.S842S 0.18 TCGA-18-3406-01 12 76767175 76767175 T A OSBPL8 Silent p.S622S 0.29 TCGA-18-3406-01 12 77417881 77417881 C T E2F7 Missense_Mutation p.V884I 0.21 tolerated(0.21) benign(0.002) TCGA-18-3406-01 13 103279418 103279418 G A TPP2 Missense_Mutation p.E281K 0.27 deleterious(0.01) benign(0.134) TCGA-18-3406-01 13 77844568 77844568 T A MYCBP2 Missense_Mutation p.M313L 0.35 benign(0.205) TCGA-18-3406-01 14 101348272 101348272 C T RTL1 Missense_Mutation p.E952K 0.22 tolerated(0.35) probably_damaging(0.996) TCGA-18-3406-01 14 107198985 107198985 G A IGHV3-72 Silent p.L102L 0.25 TCGA-18-3406-01 14 21465057 21465057 G A METTL17 3'UTR 0.26 TCGA-18-3406-01 14 23346451 23346451 G A LRP10 Silent p.K619K 0.21 TCGA-18-3406-01 14 23901920 23901920 C T MYH7 Missense_Mutation p.G144S 0.19 deleterious(0) probably_damaging(0.99) TCGA-18-3406-01 14 24788418 24788418 C G ADCY4 Missense_Mutation p.D948H 0.30 deleterious(0) possibly_damaging(0.829) TCGA-18-3406-01 14 30105516 30105516 C T PRKD1 Silent p.E390E 0.20 TCGA-18-3406-01 14 42356690 42356690 C G LRFN5 Missense_Mutation p.L288V 0.18 tolerated(0.17) possibly_damaging(0.456) TCGA-18-3406-01 14 42373396 42373396 C A LRFN5 3'UTR 0.17 TCGA-18-3406-01 14 52907400 52907400 G T TXNDC16 Missense_Mutation p.Q629K 0.28 tolerated(0.55) benign(0.017) TCGA-18-3406-01 14 60581998 60581998 C T PCNXL4 Silent p.G158G 0.17 TCGA-18-3406-01 14 70991102 70991102 G A ADAM20 Missense_Mutation p.L175F 0.16 tolerated(0.12) possibly_damaging(0.742) TCGA-18-3406-01 14 75329373 75329373 G A PROX2 Intron 0.17 TCGA-18-3406-01 14 88707111 88707111 G A KCNK10 Silent p.N152N 0.15 TCGA-18-3406-01 14 92600506 92600506 C G CPSF2 Missense_Mutation p.L101V 0.21 deleterious(0.03) possibly_damaging(0.855) TCGA-18-3406-01 15 21071319 21071319 C A POTEB2 Missense_Mutation p.V98F 0.22 deleterious(0.01) probably_damaging(0.953) TCGA-18-3406-01 15 43621302 43621302 C G LCMT2 Silent p.L462L 0.26 TCGA-18-3406-01 15 48787692 48787692 A G FBN1 Missense_Mutation p.L838S 0.06 probably_damaging(0.999) TCGA-18-3406-01 15 51502907 51502907 A G CYP19A1 3'UTR 0.36 TCGA-18-3406-01 15 68582855 68582855 C T FEM1B Nonsense_Mutation p.R387* 0.15 TCGA-18-3406-01 15 79750082 79750082 T C KIAA1024 Silent p.S531S 0.44 TCGA-18-3406-01 16 1397706 1397706 C T BAIAP3 Missense_Mutation p.T1005I 0.19 tolerated(0.14) benign(0.028) TCGA-18-3406-01 16 16219669 16219669 C T ABCC1 Silent p.V1240V 0.12 TCGA-18-3406-01 16 2024958 2024958 G A TBL3 Missense_Mutation p.R165H 0.29 tolerated(0.19) benign(0.149) TCGA-18-3406-01 16 2152826 2152826 G A PKD1 Silent p.F2979F 0.33 TCGA-18-3406-01 16 46710571 46710571 T A VPS35 Missense_Mutation p.N280Y 0.24 deleterious(0.01) possibly_damaging(0.835) TCGA-18-3406-01 16 47732384 47732384 T A PHKB Missense_Mutation p.L1010Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-18-3406-01 16 4862173 4862173 A T GLYR1 Nonsense_Mutation p.L399* 0.12 TCGA-18-3406-01 16 50745378 50745378 A C NOD2 Missense_Mutation p.Q519P 0.30 deleterious(0) possibly_damaging(0.772) TCGA-18-3406-01 16 66881002 66881002 C A CA7 Missense_Mutation p.S37Y 0.27 tolerated(0.43) probably_damaging(0.976) TCGA-18-3406-01 16 705245 705245 G A WDR90 Intron 0.50 TCGA-18-3406-01 16 71674862 71674862 A G MARVELD3 Missense_Mutation p.K389E 0.12 deleterious(0) possibly_damaging(0.523) TCGA-18-3406-01 16 76513408 76513408 C A CNTNAP4 Missense_Mutation p.P546T 0.16 deleterious(0) possibly_damaging(0.839) TCGA-18-3406-01 16 81529060 81529060 C T CMIP Intron 0.22 TCGA-18-3406-01 16 83999366 83999366 C T OSGIN1 Silent p.I396I 0.21 TCGA-18-3406-01 16 87902863 87902863 C A SLC7A5 Missense_Mutation p.V56L 0.16 deleterious(0.01) benign(0.379) TCGA-18-3406-01 17 10293781 10293781 C A MYH8 Missense_Mutation p.S1935I 0.20 tolerated_low_confidence(0.2) benign(0) TCGA-18-3406-01 17 10315780 10315780 C A MYH8 Missense_Mutation p.W441C 0.31 deleterious(0) probably_damaging(1) TCGA-18-3406-01 17 10406385 10406385 T A MYH1 Missense_Mutation p.I958F 0.23 deleterious(0) possibly_damaging(0.635) TCGA-18-3406-01 17 10433009 10433009 T C MYH2 Missense_Mutation p.K997E 0.34 deleterious(0.01) possibly_damaging(0.899) TCGA-18-3406-01 17 29096931 29096931 G A SUZ12P RNA 0.17 TCGA-18-3406-01 17 40733785 40733785 G C FAM134C 3'UTR 0.35 TCGA-18-3406-01 17 57109409 57109409 C G TRIM37 Missense_Mutation p.R599T 0.20 deleterious_low_confidence(0.01) benign(0.41) TCGA-18-3406-01 17 73623407 73623407 G C RECQL5 3'UTR 0.19 TCGA-18-3406-01 17 74921168 74921168 C G MGAT5B Missense_Mutation p.F393L 0.13 tolerated(0.21) benign(0.026) TCGA-18-3406-01 17 7578202 7578202 A T TP53 Missense_Mutation p.V216E 0.32 deleterious(0) probably_damaging(1) TCGA-18-3406-01 17 76831437 76831437 T C USP36 Missense_Mutation p.N134D 0.20 deleterious(0) probably_damaging(0.999) TCGA-18-3406-01 17 8170927 8170927 G A PFAS Missense_Mutation p.R1109H 0.31 deleterious(0.02) benign(0.248) TCGA-18-3406-01 18 21424984 21424984 A G LAMA3 Silent p.L1205L 0.22 TCGA-18-3406-01 18 51887135 51887141 TATCCTG - C18orf54 Frame_Shift_Del p.Y65Vfs*52 0.13 TCGA-18-3406-01 18 55361814 55361814 C T ATP8B1 Silent p.T343T 0.17 TCGA-18-3406-01 18 73122659 73122659 G C SMIM21 3'UTR 0.38 TCGA-18-3406-01 19 11515847 11515847 G C RGL3 Silent p.L387L 0.16 TCGA-18-3406-01 19 11515889 11515889 G C RGL3 Missense_Mutation p.F373L 0.16 deleterious(0.04) possibly_damaging(0.853) TCGA-18-3406-01 19 12638156 12638156 G A ZNF564 Nonsense_Mutation p.Q256* 0.19 TCGA-18-3406-01 19 12969501 12969501 C T MAST1 Silent p.F438F 0.21 TCGA-18-3406-01 19 17835935 17835935 G T MAP1S Missense_Mutation p.E127D 0.33 tolerated(0.22) probably_damaging(0.987) TCGA-18-3406-01 19 21299686 21299686 G A ZNF714 Silent p.L72L 0.12 TCGA-18-3406-01 19 39297206 39297206 C T LGALS4 Silent p.E123E 0.54 TCGA-18-3406-01 19 39998995 39998995 G C DLL3 3'UTR 0.19 TCGA-18-3406-01 19 4512463 4512463 G T PLIN4 Silent p.S489S 0.20 TCGA-18-3406-01 19 49910146 49910146 G A CCDC155 Missense_Mutation p.G268R 0.18 tolerated(0.28) benign(0.029) TCGA-18-3406-01 19 52003549 52003549 G T SIGLEC12 Missense_Mutation p.Q145K 0.32 tolerated(0.59) benign(0.025) TCGA-18-3406-01 19 52520455 52520455 C G ZNF614 Missense_Mutation p.L132F 0.25 tolerated(0.22) benign(0.019) TCGA-18-3406-01 19 53884042 53884042 C T ZNF525 Silent p.H70H 0.11 TCGA-18-3406-01 19 53912075 53912075 C A ZNF765 Missense_Mutation p.Q423K 0.44 tolerated(0.82) benign(0.001) TCGA-18-3406-01 19 55087554 55087554 C A LILRA2 Missense_Mutation p.D411E 0.47 tolerated(0.74) benign(0.008) TCGA-18-3406-01 19 55813535 55813535 C T BRSK1 Silent p.L286L 0.21 TCGA-18-3406-01 19 57640914 57640914 G A USP29 Missense_Mutation p.G291R 0.31 deleterious(0) probably_damaging(1) TCGA-18-3406-01 19 9072615 9072615 T C MUC16 Missense_Mutation p.D4944G 0.14 unknown(0) TCGA-18-3406-01 1 109242693 109242693 G C PRPF38B 3'UTR 0.29 TCGA-18-3406-01 1 114483925 114483925 A T HIPK1 Missense_Mutation p.K307M 0.35 deleterious(0) probably_damaging(0.997) TCGA-18-3406-01 1 1263143 1263143 G C GLTPD1 Nonstop_Mutation p.*215Yext*44 0.12 TCGA-18-3406-01 1 145103915 145103915 G A SEC22B RNA 0.19 TCGA-18-3406-01 1 152325832 152325832 C T FLG2 Missense_Mutation p.R1477K 0.11 benign(0.432) TCGA-18-3406-01 1 155319173 155319173 T C ASH1L Missense_Mutation p.Y2500C 0.31 deleterious_low_confidence(0) probably_damaging(1) TCGA-18-3406-01 1 155408137 155408137 C T ASH1L Missense_Mutation p.E1937K 0.17 tolerated_low_confidence(0.07) benign(0.026) TCGA-18-3406-01 1 157490979 157490979 C T FCRL5 Silent p.L781L 0.26 TCGA-18-3406-01 1 15844888 15844888 C A CASP9 Silent p.R45R 0.27 TCGA-18-3406-01 1 166962035 166962035 C A MAEL Silent p.L146L 0.23 TCGA-18-3406-01 1 179609118 179609118 A T TDRD5 Missense_Mutation p.E555D 0.23 tolerated(0.06) benign(0.149) TCGA-18-3406-01 1 183221726 183221726 G A NMNAT2 3'UTR 0.22 TCGA-18-3406-01 1 183885717 183885717 C T RGL1 Missense_Mutation p.S664L 0.31 deleterious(0.01) possibly_damaging(0.907) TCGA-18-3406-01 1 212965318 212965318 G C TATDN3 Missense_Mutation p.D19H 0.14 deleterious(0.03) possibly_damaging(0.495) TCGA-18-3406-01 1 214551397 214551397 G T PTPN14 Missense_Mutation p.L865M 0.23 tolerated(0.14) probably_damaging(0.999) TCGA-18-3406-01 1 215963407 215963407 C A USH2A Missense_Mutation p.M3392I 0.17 benign(0.027) TCGA-18-3406-01 1 216062110 216062110 G C USH2A Missense_Mutation p.I2627M 0.28 possibly_damaging(0.77) TCGA-18-3406-01 1 237837447 237837447 A G RYR2 Missense_Mutation p.E2881G 0.19 probably_damaging(1) TCGA-18-3406-01 1 247655048 247655048 C A OR2W5 RNA 0.22 TCGA-18-3406-01 1 247655049 247655049 C A OR2W5 RNA 0.24 TCGA-18-3406-01 1 35332751 35332751 C T DLGAP3 Silent p.A873A 0.21 TCGA-18-3406-01 1 40874374 40874374 A G SMAP2 Missense_Mutation p.Y96C 0.23 tolerated(0.16) possibly_damaging(0.841) TCGA-18-3406-01 1 47765602 47765602 G A STIL Nonsense_Mutation p.Q226* 0.16 TCGA-18-3406-01 1 94343061 94343061 C G DNTTIP2 Missense_Mutation p.E144Q 0.36 deleterious(0) probably_damaging(0.965) TCGA-18-3406-01 1 981368 981368 C T AGRN Missense_Mutation p.A902V 0.15 tolerated(0.25) possibly_damaging(0.499) TCGA-18-3406-01 20 18529360 18529360 C T SEC23B Silent p.S617S 0.10 TCGA-18-3406-01 20 2644303 2644303 C G IDH3B Intron 0.20 TCGA-18-3406-01 20 4866555 4866555 C A SLC23A2 Missense_Mutation p.R161S 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-18-3406-01 20 62153023 62153023 C G PPDPF Missense_Mutation p.L46V 0.11 tolerated(0.07) benign(0.111) TCGA-18-3406-01 20 7866369 7866369 C A HAO1 Missense_Mutation p.W319L 0.24 deleterious(0) probably_damaging(0.988) TCGA-18-3406-01 21 31588225 31588225 C G CLDN8 Missense_Mutation p.E7Q 0.22 tolerated(1) benign(0.003) TCGA-18-3406-01 21 31864183 31864183 G A KRTAP19-3 Silent p.S31S 0.24 TCGA-18-3406-01 22 18064177 18064177 G A SLC25A18 Missense_Mutation p.R66Q 0.29 deleterious(0.03) benign(0.221) TCGA-18-3406-01 22 32477933 32477933 A G SLC5A1 Silent p.A186A 0.16 TCGA-18-3406-01 22 37466994 37466994 C A TMPRSS6 Missense_Mutation p.R554L 0.19 tolerated(0.55) benign(0.003) TCGA-18-3406-01 22 37707538 37707538 G A CYTH4 Silent p.S309S 0.26 TCGA-18-3406-01 22 50662625 50662625 G A TUBGCP6 Nonsense_Mutation p.R739* 0.25 TCGA-18-3406-01 2 137814720 137814720 G C THSD7B Silent p.S290S 0.09 TCGA-18-3406-01 2 179702022 179702022 C G CCDC141 Missense_Mutation p.K1308N 0.29 tolerated(0.45) benign(0.008) TCGA-18-3406-01 2 200137136 200137136 C A SATB2 Missense_Mutation p.R667L 0.24 deleterious(0) probably_damaging(0.996) TCGA-18-3406-01 2 206023503 206023503 G T PARD3B Intron 0.06 TCGA-18-3406-01 2 209200098 209200098 C T PIKFYVE Missense_Mutation p.P1404L 0.21 tolerated(0.1) probably_damaging(0.922) TCGA-18-3406-01 2 216251681 216251681 C T FN1 Missense_Mutation p.G1448D 0.19 tolerated(0.62) probably_damaging(0.942) TCGA-18-3406-01 2 27260448 27260448 C G TMEM214 Missense_Mutation p.Q344E 0.22 tolerated(0.29) possibly_damaging(0.848) TCGA-18-3406-01 2 32832614 32832614 A T BIRC6 Silent p.T4721T 0.19 TCGA-18-3406-01 2 40656932 40656932 T C SLC8A1 Silent p.A163A 0.16 TCGA-18-3406-01 2 43986038 43986038 G A PLEKHH2 Splice_Site p.X1314_splice 0.21 TCGA-18-3406-01 2 70064701 70064701 A G GMCL1 Missense_Mutation p.K95E 0.21 tolerated(0.43) benign(0.005) TCGA-18-3406-01 2 72359529 72359529 C A CYP26B1 Missense_Mutation p.V456L 0.25 tolerated(0.08) benign(0.123) TCGA-18-3406-01 2 79878739 79878739 C G CTNNA2 Missense_Mutation p.I19M 0.11 deleterious(0) probably_damaging(0.998) TCGA-18-3406-01 2 89247247 89247247 C A IGKV1-5 Missense_Mutation p.W16C 0.26 tolerated(0.08) benign(0.016) TCGA-18-3406-01 2 90229415 90229415 G T IGKV1D-42 Missense_Mutation p.G79W 0.20 deleterious(0.02) probably_damaging(1) TCGA-18-3406-01 2 90229416 90229416 G T IGKV1D-42 Missense_Mutation p.G79V 0.22 deleterious(0.01) probably_damaging(1) TCGA-18-3406-01 2 90260124 90260124 T C IGKV1D-8 Missense_Mutation p.L76S 0.10 deleterious(0.02) possibly_damaging(0.606) TCGA-18-3406-01 3 100994577 100994577 C T IMPG2 Missense_Mutation p.S199N 0.19 tolerated(0.62) benign(0.007) TCGA-18-3406-01 3 121712684 121712684 A T ILDR1 Silent p.P304P 0.15 TCGA-18-3406-01 3 123044199 123044199 G T ADCY5 Silent p.G686G 0.17 TCGA-18-3406-01 3 127649097 127649097 C G KBTBD12 Missense_Mutation p.A488G 0.12 deleterious(0.02) benign(0.4) TCGA-18-3406-01 3 143297493 143297493 C - SLC9A9 Frame_Shift_Del p.N277Ifs*23 0.14 TCGA-18-3406-01 3 14549198 14549198 T A GRIP2 RNA 0.31 TCGA-18-3406-01 3 164780248 164780248 T C SI Missense_Mutation p.I311V 0.23 deleterious(0.04) benign(0.004) TCGA-18-3406-01 3 167189518 167189518 T C SERPINI2 Silent p.Q35Q 0.16 TCGA-18-3406-01 3 167543135 167543135 A G SERPINI1 3'UTR 0.16 TCGA-18-3406-01 3 169846593 169846593 G A PHC3 Missense_Mutation p.S556L 0.17 deleterious(0) probably_damaging(0.995) TCGA-18-3406-01 3 49094466 49094466 C G QRICH1 Missense_Mutation p.M389I 0.15 deleterious(0) benign(0.013) TCGA-18-3406-01 3 50338437 50338437 C T HYAL1 Nonsense_Mutation p.W324* 0.27 TCGA-18-3406-01 3 73437214 73437214 C T PDZRN3 Missense_Mutation p.G475R 0.22 deleterious(0) probably_damaging(1) TCGA-18-3406-01 3 96533764 96533764 A T EPHA6 Missense_Mutation p.E99D 0.12 tolerated_low_confidence(0.12) benign(0) TCGA-18-3406-01 3 98109533 98109533 G C OR5K3 Missense_Mutation p.L8F 0.25 tolerated(0.06) benign(0.006) TCGA-18-3406-01 4 100504545 100504545 T C MTTP Silent p.N88N 0.08 TCGA-18-3406-01 4 122261669 122261669 C T QRFPR Missense_Mutation p.G146E 0.27 deleterious(0.01) possibly_damaging(0.598) TCGA-18-3406-01 4 153245437 153245437 C G FBXW7 Missense_Mutation p.S585T 0.12 tolerated(0.12) probably_damaging(0.95) TCGA-18-3406-01 4 177052851 177052851 G T WDR17 Missense_Mutation p.D378Y 0.28 deleterious(0) probably_damaging(0.995) TCGA-18-3406-01 4 186263206 186263206 C G SNX25 Missense_Mutation p.T544S 0.23 tolerated(0.34) benign(0.011) TCGA-18-3406-01 4 186559238 186559238 G A SORBS2 Intron 0.23 TCGA-18-3406-01 4 38691456 38691456 C T KLF3 Silent p.P217P 0.24 TCGA-18-3406-01 4 39482782 39482782 G A LIAS 3'Flank 0.23 TCGA-18-3406-01 4 39839563 39839563 C A PDS5A Missense_Mutation p.G1308V 0.24 tolerated_low_confidence(0.38) benign(0.021) TCGA-18-3406-01 4 40121558 40121558 A T N4BP2 Missense_Mutation p.R609S 0.19 deleterious(0) benign(0.084) TCGA-18-3406-01 4 47840019 47840019 T C CORIN 5'Flank 0.14 TCGA-18-3406-01 5 102513644 102513644 T C PPIP5K2 Missense_Mutation p.L906S 0.09 tolerated(0.08) benign(0.283) TCGA-18-3406-01 5 1232344 1232344 C T SLC6A18 Silent p.L57L 0.31 TCGA-18-3406-01 5 129015459 129015459 C A ADAMTS19 Missense_Mutation p.L831I 0.20 deleterious(0.01) possibly_damaging(0.759) TCGA-18-3406-01 5 137780462 137780462 C T REEP2 Missense_Mutation p.T108M 0.17 deleterious(0.01) benign(0.129) TCGA-18-3406-01 5 140784058 140784058 G C PCDHGA9 Silent p.V513V 0.17 TCGA-18-3406-01 5 162910151 162910151 G C HMMR Missense_Mutation p.R553T 0.24 tolerated(0.08) benign(0.011) TCGA-18-3406-01 5 23527187 23527187 T C PRDM9 Missense_Mutation p.Y664H 0.17 tolerated(0.14) probably_damaging(0.999) TCGA-18-3406-01 5 33527362 33527362 G T ADAMTS12 Silent p.P1572P 0.17 TCGA-18-3406-01 5 40852313 40852313 G C CARD6 Missense_Mutation p.L293F 0.18 deleterious(0) probably_damaging(1) TCGA-18-3406-01 5 40964946 40964946 G T C7 Missense_Mutation p.R618L 0.16 tolerated(0.09) benign(0.175) TCGA-18-3406-01 5 70835476 70835476 G T BDP1 Missense_Mutation p.V2008L 0.20 deleterious(0.05) benign(0.202) TCGA-18-3406-01 5 70855849 70855849 A C BDP1 Silent p.G2427G 0.19 TCGA-18-3406-01 5 71521968 71521968 C T MRPS27 Nonsense_Mutation p.W251* 0.24 TCGA-18-3406-01 5 78423633 78423633 C A BHMT Silent p.A288A 0.23 TCGA-18-3406-01 5 82948608 82948608 G T HAPLN1 Missense_Mutation p.Q46K 0.27 tolerated(0.53) benign(0.012) TCGA-18-3406-01 6 100390823 100390823 A C MCHR2 Splice_Site p.X196_splice 0.39 TCGA-18-3406-01 6 112506499 112506499 G C LAMA4 Missense_Mutation p.I339M 0.15 tolerated(0.06) possibly_damaging(0.882) TCGA-18-3406-01 6 117707019 117707019 C T ROS1 Missense_Mutation p.D711N 0.18 deleterious(0.04) probably_damaging(1) TCGA-18-3406-01 6 142764490 142764490 C T GPR126 Silent p.D1197D 0.10 TCGA-18-3406-01 6 157528347 157528347 G T ARID1B Silent p.T2024T 0.18 TCGA-18-3406-01 6 157743751 157743751 C G TMEM242 Missense_Mutation p.E59Q 0.35 tolerated(0.2) benign(0.063) TCGA-18-3406-01 6 160328351 160328351 C T MAS1 Silent p.L122L 0.19 TCGA-18-3406-01 6 169053880 169053880 C G SMOC2 Missense_Mutation p.D430E 0.13 tolerated(1) benign(0.004) TCGA-18-3406-01 6 26285637 26285637 T C HIST1H4H Missense_Mutation p.T31A 0.32 deleterious(0.03) benign(0.382) TCGA-18-3406-01 6 27107140 27107140 G T HIST1H4I Missense_Mutation p.R18L 0.27 deleterious(0) unknown(0) TCGA-18-3406-01 6 31937152 31937152 G A SKIV2L Silent p.L1165L 0.17 TCGA-18-3406-01 6 3287237 3287237 C T SLC22A23 Missense_Mutation p.D468N 0.30 tolerated(0.09) benign(0.082) TCGA-18-3406-01 6 33261749 33261749 C T RGL2 Intron 0.38 TCGA-18-3406-01 6 33262491 33262491 C G RGL2 Missense_Mutation p.D443H 0.45 deleterious(0) benign(0.309) TCGA-18-3406-01 6 39330271 39330271 G A KIF6 Missense_Mutation p.P629S 0.61 tolerated(0.79) benign(0.001) TCGA-18-3406-01 6 46847578 46847578 T C GPR116 Missense_Mutation p.H338R 0.23 tolerated(0.34) benign(0.003) TCGA-18-3406-01 6 52268164 52268164 C T PAQR8 Silent p.I51I 0.24 TCGA-18-3406-01 6 97676876 97676876 G A MMS22L Missense_Mutation p.H645Y 0.21 deleterious(0) probably_damaging(0.986) TCGA-18-3406-01 7 100676099 100676099 G C MUC17 Missense_Mutation p.E468Q 0.06 probably_damaging(0.954) TCGA-18-3406-01 7 112724255 112724255 G C GPR85 Missense_Mutation p.F174L 0.28 tolerated(0.15) possibly_damaging(0.842) TCGA-18-3406-01 7 16644386 16644386 C A ANKMY2 Missense_Mutation p.G324V 0.34 deleterious(0) possibly_damaging(0.745) TCGA-18-3406-01 7 21805045 21805045 G T DNAH11 Splice_Site p.X2988_splice 0.25 TCGA-18-3406-01 7 36338847 36338847 C G EEPD1 3'UTR 0.43 TCGA-18-3406-01 7 63529391 63529391 C T ZNF727 Silent p.S42S 0.19 TCGA-18-3406-01 7 66453478 66453478 C G SBDS Silent p.L211L 0.16 TCGA-18-3406-01 7 75634626 75634626 C T STYXL1 Missense_Mutation p.D184N 0.21 deleterious(0.02) possibly_damaging(0.461) TCGA-18-3406-01 7 82997159 82997159 G A SEMA3E Missense_Mutation p.H691Y 0.14 tolerated(1) benign(0.006) TCGA-18-3406-01 7 86468972 86468972 C T GRM3 Silent p.T714T 0.17 TCGA-18-3406-01 7 91709170 91709170 C T AKAP9 Nonsense_Mutation p.Q2575* 0.15 TCGA-18-3406-01 8 118184913 118184913 G A SLC30A8 Missense_Mutation p.C368Y 0.30 tolerated(0.16) benign(0) TCGA-18-3406-01 8 143624969 143624969 T A BAI1 Missense_Mutation p.M1486K 0.21 deleterious(0) possibly_damaging(0.904) TCGA-18-3406-01 8 17409474 17409474 C G SLC7A2 Missense_Mutation p.S385C 0.41 deleterious(0) probably_damaging(0.996) TCGA-18-3406-01 8 54960577 54960577 C G LYPLA1 3'UTR 0.29 TCGA-18-3406-01 8 55542765 55542765 T A RP1 Missense_Mutation p.I2108N 0.21 deleterious(0.04) possibly_damaging(0.879) TCGA-18-3406-01 8 61736458 61736458 T A CHD7 Silent p.I1087I 0.33 TCGA-18-3406-01 8 77766782 77766782 C G ZFHX4 Missense_Mutation p.P2542R 0.14 probably_damaging(0.997) TCGA-18-3406-01 8 82571595 82571595 G A IMPA1 Silent p.D334D 0.13 TCGA-18-3406-01 9 139916916 139916916 G C ABCA2 Missense_Mutation p.L152V 0.41 tolerated(0.19) benign(0.247) TCGA-18-3406-01 9 19376297 19376297 C A RPS6 Missense_Mutation p.Q248H 0.27 deleterious(0.01) unknown(0) TCGA-18-3406-01 9 33278108 33278108 C G CHMP5 Intron 0.30 TCGA-18-3406-01 9 90501472 90501472 T C SPATA31E1 Silent p.D690D 0.21 TCGA-18-3406-01 9 92020460 92020460 G A SEMA4D 5'UTR 0.62 TCGA-18-3406-01 X 105152885 105152885 C A NRK Missense_Mutation p.P419T 0.37 deleterious(0) probably_damaging(0.996) TCGA-18-3406-01 X 142803853 142803853 G T SPANXN2 5'UTR 0.68 TCGA-18-3406-01 X 153490660 153490660 C T OPN1MW2 Silent p.T132T 0.13 TCGA-18-3406-01 X 154185447 154185447 C T F8 Splice_Site p.X513_splice 0.52 TCGA-18-3406-01 X 47308087 47308087 C A ZNF41 Missense_Mutation p.G361V 0.26 deleterious(0.01) possibly_damaging(0.737) TCGA-18-3406-01 X 47308088 47308088 C A ZNF41 Nonsense_Mutation p.G361* 0.26 TCGA-18-3406-01 X 52893869 52893869 C G XAGE3 Missense_Mutation p.G83A 0.38 deleterious(0.02) benign(0.371) TCGA-18-3406-01 X 5811256 5811256 G C NLGN4X Missense_Mutation p.L685V 0.66 deleterious(0) probably_damaging(0.952) TCGA-18-3406-01 X 63412922 63412922 C A AMER1 Missense_Mutation p.G82V 0.37 deleterious(0) possibly_damaging(0.701) TCGA-18-3406-01 X 76889176 76889176 G C ATRX Missense_Mutation p.L1612V 0.45 probably_damaging(0.994) TCGA-18-3406-01 X 79282782 79282782 C G TBX22 Missense_Mutation p.P276A 0.23 deleterious(0.02) possibly_damaging(0.788) TCGA-18-3406-01 X 79971739 79971739 C T BRWD3 Missense_Mutation p.E748K 0.35 tolerated(0.12) possibly_damaging(0.564) TCGA-18-3406-01 X 83128726 83128726 C G CYLC1 Missense_Mutation p.S337C 0.46 deleterious(0) unknown(0) TCGA-18-3407-01 10 96443545 96443545 C G CYP2C18 5'UTR 0.18 TCGA-18-3407-01 10 96827270 96827270 A T CYP2C8 Intron 0.32 TCGA-18-3407-01 11 21581914 21581914 G C NELL1 Missense_Mutation p.V656L 0.29 tolerated(0.09) benign(0.026) TCGA-18-3407-01 11 46896436 46896436 G A LRP4 Missense_Mutation p.P1382S 0.18 tolerated(0.29) benign(0.023) TCGA-18-3407-01 11 65480830 65480830 G A KAT5 Silent p.A132A 0.12 TCGA-18-3407-01 11 87016979 87016979 T A TMEM135 Missense_Mutation p.C234S 0.15 tolerated(0.19) possibly_damaging(0.503) TCGA-18-3407-01 12 104481815 104481815 G C HCFC2 Missense_Mutation p.S428T 0.26 tolerated(0.36) benign(0.01) TCGA-18-3407-01 12 53004546 53004546 T G KRT73 Missense_Mutation p.K395T 0.13 deleterious(0) probably_damaging(1) TCGA-18-3407-01 12 98926689 98926689 T G TMPO Missense_Mutation p.F218L 0.13 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-18-3407-01 14 30135343 30135343 A G PRKD1 Missense_Mutation p.F159L 0.25 deleterious(0) probably_damaging(0.957) TCGA-18-3407-01 15 101933582 101933582 G A PCSK6 Silent p.G347G 0.17 TCGA-18-3407-01 15 25442783 25442783 A C SNORD115-15 RNA 0.09 TCGA-18-3407-01 15 53081189 53081189 G A ONECUT1 Missense_Mutation p.A298V 0.11 deleterious(0) probably_damaging(0.974) TCGA-18-3407-01 15 90171694 90171694 G A KIF7 Nonsense_Mutation p.R1330* 0.20 TCGA-18-3407-01 16 1388906 1388906 A C BAIAP3 Missense_Mutation p.K80N 0.08 deleterious(0.03) possibly_damaging(0.579) TCGA-18-3407-01 16 15865568 15865568 A G MYH11 Silent p.S304S 0.14 TCGA-18-3407-01 16 20477026 20477026 T C ACSM2A Missense_Mutation p.V122A 0.12 tolerated(0.3) benign(0.134) TCGA-18-3407-01 16 3789636 3789636 C T CREBBP Missense_Mutation p.C1408Y 0.10 unknown(0) TCGA-18-3407-01 16 53922817 53922817 A T FTO Missense_Mutation p.Q398L 0.11 tolerated(0.14) benign(0.004) TCGA-18-3407-01 17 33690294 33690294 G C SLFN11 Missense_Mutation p.P178R 0.07 tolerated(0.7) benign(0.001) TCGA-18-3407-01 17 50008434 50008434 C T CA10 Silent p.R65R 0.07 TCGA-18-3407-01 17 52993166 52993166 C T TOM1L1 Silent p.A221A 0.11 TCGA-18-3407-01 17 7094078 7094078 G A DLG4 Silent p.I751I 0.14 TCGA-18-3407-01 17 71166359 71166359 A T SSTR2 Missense_Mutation p.T301S 0.23 tolerated(1) benign(0.013) TCGA-18-3407-01 17 75208270 75208270 G A SEC14L1 Missense_Mutation p.G617E 0.18 deleterious(0) probably_damaging(1) TCGA-18-3407-01 17 7578213 7578214 AA - TP53 Frame_Shift_Del p.F212Sfs*3 0.23 TCGA-18-3407-01 17 78039299 78039299 G A CCDC40 Missense_Mutation p.D486N 0.22 deleterious(0.01) possibly_damaging(0.851) TCGA-18-3407-01 18 29049134 29049149 CAATCGGTGTGAGATG - DSG3 Frame_Shift_Del p.N574Hfs*4 0.11 TCGA-18-3407-01 18 31324284 31324284 T C ASXL3 Missense_Mutation p.V1491A 0.10 benign(0.05) TCGA-18-3407-01 18 64172458 64172458 T A CDH19 Missense_Mutation p.N637I 0.10 deleterious(0) probably_damaging(1) TCGA-18-3407-01 19 10610247 10610247 C A KEAP1 Missense_Mutation p.V155F 0.33 deleterious(0.01) probably_damaging(0.993) TCGA-18-3407-01 19 16962230 16962230 G C SIN3B Missense_Mutation p.G245A 0.19 tolerated(0.1) benign(0.2) TCGA-18-3407-01 19 21605993 21605993 G T ZNF493 Nonsense_Mutation p.G178* 0.41 TCGA-18-3407-01 19 40872569 40872569 A T PLD3 Missense_Mutation p.E27V 0.17 deleterious_low_confidence(0.04) possibly_damaging(0.766) TCGA-18-3407-01 19 41351983 41351983 G A CYP2A6 Missense_Mutation p.T284M 0.16 probably_damaging(0.99) TCGA-18-3407-01 19 41932031 41932031 G C B3GNT8 Missense_Mutation p.P218R 0.17 tolerated(0.06) possibly_damaging(0.826) TCGA-18-3407-01 19 4217104 4217104 A G ANKRD24 Silent p.E649E 0.06 TCGA-18-3407-01 19 43575959 43575959 A T PSG2 Missense_Mutation p.L286Q 0.08 deleterious(0) probably_damaging(0.97) TCGA-18-3407-01 19 54545432 54545432 G T VSTM1 Missense_Mutation p.S169Y 0.25 deleterious(0.01) probably_damaging(0.96) TCGA-18-3407-01 19 5641789 5641789 C T SAFB Silent p.I126I 0.11 TCGA-18-3407-01 19 58639458 58639458 G T ZNF329 Silent p.T471T 0.11 TCGA-18-3407-01 19 7584121 7584121 C A CTD-2207O23.12 Missense_Mutation p.R31S 0.10 unknown(0) TCGA-18-3407-01 19 7584122 7584122 G C CTD-2207O23.12 Missense_Mutation p.R31P 0.09 unknown(0) TCGA-18-3407-01 19 7584123 7584123 C G CTD-2207O23.12 Silent p.R31R 0.09 TCGA-18-3407-01 1 158225830 158225830 T G CD1A Missense_Mutation p.L121R 0.15 deleterious(0.01) benign(0.229) TCGA-18-3407-01 1 181680149 181680149 G A CACNA1E Missense_Mutation p.R372H 0.12 deleterious(0) possibly_damaging(0.522) TCGA-18-3407-01 1 22154752 22154752 G T HSPG2 Missense_Mutation p.F4135L 0.12 benign(0.37) TCGA-18-3407-01 1 34067979 34067979 T C CSMD2 Missense_Mutation p.I2236V 0.12 deleterious(0) benign(0.181) TCGA-18-3407-01 1 3688109 3688109 C A CCDC27 3'UTR 0.14 TCGA-18-3407-01 1 7887817 7887817 C T PER3 Missense_Mutation p.P935L 0.08 tolerated(0.25) possibly_damaging(0.908) TCGA-18-3407-01 20 20505105 20505105 G A RALGAPA2 Missense_Mutation p.A1282V 0.11 tolerated(0.14) benign(0.001) TCGA-18-3407-01 20 57829592 57829592 A T ZNF831 Missense_Mutation p.S1610C 0.15 deleterious(0.02) possibly_damaging(0.533) TCGA-18-3407-01 22 43575988 43575988 G A TTLL12 Missense_Mutation p.P189S 0.10 deleterious(0.01) benign(0.259) TCGA-18-3407-01 22 46652800 46652800 T C PKDREJ Silent p.E2140E 0.16 TCGA-18-3407-01 22 50356382 50356382 A G PIM3 Missense_Mutation p.Y221C 0.17 deleterious(0) probably_damaging(0.999) TCGA-18-3407-01 2 113498469 113498469 C G CKAP2L Silent p.T646T 0.19 TCGA-18-3407-01 2 167319016 167319016 A G SCN7A Silent p.C322C 0.16 TCGA-18-3407-01 2 169938130 169938130 T G DHRS9 Silent p.G13G 0.08 TCGA-18-3407-01 2 198498590 198498590 T A RFTN2 Silent p.S190S 0.12 TCGA-18-3407-01 2 219296605 219296605 T A VIL1 Missense_Mutation p.D376E 0.22 deleterious(0.03) benign(0.299) TCGA-18-3407-01 2 219328034 219328034 A C USP37 Missense_Mutation p.L841R 0.09 deleterious(0) probably_damaging(0.931) TCGA-18-3407-01 2 234878421 234878421 C A TRPM8 Missense_Mutation p.P703H 0.13 deleterious(0) probably_damaging(0.999) TCGA-18-3407-01 2 32773032 32773032 C T BIRC6 Missense_Mutation p.A4309V 0.09 probably_damaging(0.99) TCGA-18-3407-01 2 86705771 86705771 G A KDM3A Silent p.A743A 0.28 TCGA-18-3407-01 2 89326856 89326856 A C IGKV3-11 Missense_Mutation p.L53V 0.06 tolerated(0.09) benign(0.125) TCGA-18-3407-01 3 178927980 178927980 T C PIK3CA Missense_Mutation p.C420R 0.41 tolerated(0.21) possibly_damaging(0.893) TCGA-18-3407-01 3 183995720 183995720 C T ECE2 Silent p.T280T 0.08 TCGA-18-3407-01 4 174254762 174254762 C A HMGB2 Missense_Mutation p.M13I 0.33 deleterious(0.02) possibly_damaging(0.509) TCGA-18-3407-01 5 110809031 110809031 T C CAMK4 Silent p.C216C 0.10 TCGA-18-3407-01 5 140564336 140564336 G A PCDHB16 Silent p.G734G 0.25 TCGA-18-3407-01 5 140736732 140736732 G A PCDHGA4 Silent p.S655S 0.10 TCGA-18-3407-01 5 41055934 41055934 T G MROH2B Missense_Mutation p.M315L 0.16 tolerated(1) benign(0) TCGA-18-3407-01 5 54555722 54555722 A G DHX29 Silent p.D1337D 0.15 TCGA-18-3407-01 6 12164614 12164614 C G HIVEP1 Missense_Mutation p.L2693V 0.20 tolerated(0.55) benign(0.08) TCGA-18-3407-01 6 29364649 29364649 A T OR12D2 Missense_Mutation p.Y58F 0.34 deleterious(0) probably_damaging(0.983) TCGA-18-3407-01 6 32818803 32818803 C G TAP1 Missense_Mutation p.G383A 0.07 tolerated(0.96) benign(0.029) TCGA-18-3407-01 6 87725275 87725275 G A HTR1E Missense_Mutation p.V75I 0.27 deleterious(0) probably_damaging(0.999) TCGA-18-3407-01 7 100205276 100205276 G A PCOLCE Silent p.V343V 0.13 TCGA-18-3407-01 7 100373092 100373092 C T ZAN Silent p.A1973A 0.12 TCGA-18-3407-01 7 113518998 113518998 C T PPP1R3A Missense_Mutation p.A717T 0.19 tolerated(0.07) benign(0.323) TCGA-18-3407-01 7 37901736 37901736 C T NME8 Missense_Mutation p.A126V 0.12 tolerated(0.31) benign(0.002) TCGA-18-3407-01 8 101612594 101612594 C T SNX31 Missense_Mutation p.E253K 0.14 tolerated(0.85) benign(0.005) TCGA-18-3407-01 8 121644768 121644768 C T SNTB1 Silent p.V304V 0.25 TCGA-18-3407-01 8 139165017 139165017 T - FAM135B Frame_Shift_Del p.E567Dfs*21 0.12 TCGA-18-3407-01 8 6371296 6371296 G A ANGPT2 Missense_Mutation p.R368C 0.09 tolerated(0.05) benign(0.394) TCGA-18-3407-01 8 72958758 72958758 G A TRPA1 Missense_Mutation p.T684I 0.14 tolerated(0.42) benign(0.002) TCGA-18-3407-01 8 77618422 77618422 G A ZFHX4 Missense_Mutation p.R700H 0.12 possibly_damaging(0.715) TCGA-18-3407-01 9 117798447 117798447 T C TNC Silent p.E1862E 0.23 TCGA-18-3407-01 9 21971029 21971029 C T CDKN2A Nonsense_Mutation p.W110* 0.35 TCGA-18-3407-01 9 84606846 84606846 A G SPATA31D1 Silent p.P487P 0.16 TCGA-18-3407-01 X 123514365 123514365 G A TENM1 3'UTR 0.20 TCGA-18-3407-01 X 153036446 153036446 G T PLXNB3 Missense_Mutation p.W744C 0.52 tolerated(0.19) probably_damaging(0.951) TCGA-18-3407-01 X 53279723 53279723 G A IQSEC2 Missense_Mutation p.R679W 0.53 tolerated_low_confidence(0.15) probably_damaging(0.93) TCGA-18-3407-01 X 69898679 69898679 C G TEX11 Missense_Mutation p.W421S 0.21 deleterious(0) probably_damaging(0.999) TCGA-18-3407-01 Y 3447454 3447454 T G TGIF2LY Missense_Mutation p.L57V 0.22 deleterious(0) benign(0.433) TCGA-18-3408-01 10 118084508 118084508 G T CCDC172 5'UTR 0.32 TCGA-18-3408-01 10 134040467 134040467 G A STK32C Missense_Mutation p.S159F 0.28 deleterious(0) probably_damaging(0.996) TCGA-18-3408-01 10 15255479 15255479 G A FAM171A1 Missense_Mutation p.P703L 0.39 deleterious(0) probably_damaging(0.996) TCGA-18-3408-01 10 73491744 73491744 G A CDH23 Missense_Mutation p.G1244E 0.26 deleterious(0) probably_damaging(0.996) TCGA-18-3408-01 11 134244883 134244883 G A GLB1L2 Silent p.E614E 0.17 TCGA-18-3408-01 11 55406376 55406376 T C OR4P4 Silent p.P181P 0.82 TCGA-18-3408-01 11 59271853 59271853 A C OR4D11 Missense_Mutation p.K269Q 0.42 deleterious(0.01) probably_damaging(0.939) TCGA-18-3408-01 11 62414975 62414975 C T INTS5 Silent p.E859E 0.40 TCGA-18-3408-01 11 66030426 66030426 C T KLC2 Missense_Mutation p.A224V 0.27 deleterious(0.02) probably_damaging(0.925) TCGA-18-3408-01 11 71850518 71850518 G A FOLR3 Nonsense_Mutation p.W204* 0.35 TCGA-18-3408-01 12 111891561 111891561 T C ATXN2 Missense_Mutation p.Q1278R 0.29 probably_damaging(0.989) TCGA-18-3408-01 12 121416852 121416852 C A HNF1A Missense_Mutation p.P94H 0.41 deleterious(0) possibly_damaging(0.707) TCGA-18-3408-01 12 41337853 41337853 G A CNTN1 Missense_Mutation p.A522T 0.17 tolerated(0.27) benign(0.416) TCGA-18-3408-01 12 48272667 48272667 A - VDR Intron 0.32 TCGA-18-3408-01 12 4854615 4854615 G A GALNT8 Missense_Mutation p.R294Q 0.41 tolerated(0.13) probably_damaging(0.986) TCGA-18-3408-01 12 72057457 72057457 T C ZFC3H1 5'UTR 0.41 TCGA-18-3408-01 12 8023495 8023495 G A SLC2A14 5'UTR 0.35 TCGA-18-3408-01 12 96292183 96292183 C G CCDC38 Missense_Mutation p.M198I 0.27 tolerated(0.2) benign(0.035) TCGA-18-3408-01 13 19753543 19753543 T G TUBA3C Missense_Mutation p.E55A 0.08 deleterious_low_confidence(0.01) benign(0.042) TCGA-18-3408-01 13 19753544 19753544 C A TUBA3C Nonsense_Mutation p.E55* 0.09 TCGA-18-3408-01 14 105396392 105396392 C G PLD4 Missense_Mutation p.R223G 0.29 deleterious(0.01) possibly_damaging(0.483) TCGA-18-3408-01 14 70925106 70925106 T C ADAM21 Missense_Mutation p.M297T 0.39 deleterious(0) benign(0.014) TCGA-18-3408-01 15 25223030 25223030 C - SNRPN Frame_Shift_Del p.P177Hfs*19 0.67 TCGA-18-3408-01 15 76152255 76152255 T C UBE2Q2 Missense_Mutation p.C107R 0.33 deleterious(0) probably_damaging(0.995) TCGA-18-3408-01 15 93536215 93536215 A T CHD2 Missense_Mutation p.E1194D 0.40 tolerated(0.23) benign(0.002) TCGA-18-3408-01 16 3808000 3808000 C T CREBBP Missense_Mutation p.R1140Q 0.47 unknown(0) TCGA-18-3408-01 16 70896017 70896017 A G HYDIN Missense_Mutation p.I3904T 0.27 benign(0) TCGA-18-3408-01 16 84193349 84193349 C T DNAAF1 Nonsense_Mutation p.R271* 0.37 TCGA-18-3408-01 17 10307778 10307778 C T MYH8 Missense_Mutation p.A853T 0.26 deleterious(0.02) benign(0.03) TCGA-18-3408-01 17 27062332 27062332 G A NEK8 Nonsense_Mutation p.W187* 0.26 TCGA-18-3408-01 17 30965835 30965835 C A MYO1D Missense_Mutation p.V872L 0.28 tolerated(0.25) benign(0.063) TCGA-18-3408-01 17 33690215 33690215 G A SLFN11 Silent p.I204I 0.29 TCGA-18-3408-01 17 40997603 40997603 A G AOC2 Silent p.Q320Q 0.42 TCGA-18-3408-01 17 42882110 42882110 T C GJC1 Missense_Mutation p.Q359R 0.48 tolerated(0.16) benign(0.015) TCGA-18-3408-01 17 44076726 44076726 C T STH Silent p.C27C 0.08 TCGA-18-3408-01 17 7577556 7577556 C A TP53 Missense_Mutation p.C242F 0.72 deleterious(0) probably_damaging(1) TCGA-18-3408-01 18 22007976 22007976 G C IMPACT Missense_Mutation p.D44H 0.29 deleterious(0.04) possibly_damaging(0.886) TCGA-18-3408-01 19 18333041 18333041 G A PDE4C Missense_Mutation p.P112L 0.30 deleterious_low_confidence(0.04) benign(0.022) TCGA-18-3408-01 19 23159336 23159336 G A ZNF728 Missense_Mutation p.S268F 0.29 tolerated(0.27) benign(0.008) TCGA-18-3408-01 19 38989785 38989785 G T RYR1 Missense_Mutation p.C2310F 0.33 benign(0.19) TCGA-18-3408-01 19 47725088 47725088 G A BBC3 Missense_Mutation p.P219L 0.29 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-18-3408-01 19 4929420 4929420 G T MIR4747 5'Flank 0.51 TCGA-18-3408-01 19 51525823 51525824 - G KLK11 Frame_Shift_Ins p.Q276Pfs*32 0.28 TCGA-18-3408-01 19 55295151 55295151 A G KIR2DL1 Silent p.T311T 0.32 TCGA-18-3408-01 19 55447727 55447727 C T NLRP7 Silent p.T734T 0.32 TCGA-18-3408-01 19 55670653 55670653 G A DNAAF3 Missense_Mutation p.A535V 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.804) TCGA-18-3408-01 1 144879369 144879369 G T PDE4DIP Missense_Mutation p.L1361M 0.13 deleterious(0) probably_damaging(1) TCGA-18-3408-01 1 144994785 144994785 A C PDE4DIP 5'UTR 0.08 TCGA-18-3408-01 1 145473602 145473602 G T ANKRD34A Missense_Mutation p.A92S 0.19 deleterious(0.05) benign(0.032) TCGA-18-3408-01 1 160097339 160097339 C T ATP1A2 Intron 0.26 TCGA-18-3408-01 1 164761954 164761954 G C PBX1 Silent p.T163T 0.16 TCGA-18-3408-01 1 179561770 179561770 T C TDRD5 Missense_Mutation p.I7T 0.25 deleterious(0) benign(0.198) TCGA-18-3408-01 1 204167541 204167541 C G GOLT1A 3'UTR 0.28 TCGA-18-3408-01 1 216011348 216011348 C A USH2A Missense_Mutation p.R3119L 0.44 benign(0.008) TCGA-18-3408-01 1 244218490 244218490 G T ZBTB18 Nonsense_Mutation p.E472* 0.19 TCGA-18-3408-01 1 26688385 26688385 G A ZNF683 Silent p.H424H 0.40 TCGA-18-3408-01 1 27190282 27190282 G A SFN Silent p.L193L 0.11 TCGA-18-3408-01 20 31671225 31671225 A G BPIFB4 Silent p.V74V 0.33 TCGA-18-3408-01 20 47444188 47444188 G T PREX1 Missense_Mutation p.F70L 0.50 tolerated(0.2) benign(0.014) TCGA-18-3408-01 21 46086489 46086489 G A KRTAP12-2 Silent p.C105C 0.28 TCGA-18-3408-01 22 22782086 22782086 C A IGLV5-37 Silent p.S28S 0.72 TCGA-18-3408-01 22 32506092 32506092 G A SLC5A1 Silent p.K629K 0.66 TCGA-18-3408-01 22 40060851 40060851 C T CACNA1I Silent p.S1258S 0.41 TCGA-18-3408-01 2 178098813 178098839 CATCTAGTTGTAACTGAGCGAAAAAGG - NFE2L2 In_Frame_Del p.A69_D77del 0.21 TCGA-18-3408-01 2 234591377 234591377 T A UGT1A7 Missense_Mutation p.V265E 0.32 deleterious(0) probably_damaging(0.974) TCGA-18-3408-01 2 44507894 44507894 T C SLC3A1 Missense_Mutation p.I157T 0.35 deleterious(0) possibly_damaging(0.788) TCGA-18-3408-01 3 113464856 113464856 C A NAA50 5'UTR 0.20 TCGA-18-3408-01 3 126180727 126180727 T C ZXDC Missense_Mutation p.Q593R 0.53 deleterious(0) benign(0.347) TCGA-18-3408-01 3 15466468 15466468 A T METTL6 Nonsense_Mutation p.Y118* 0.63 TCGA-18-3408-01 3 167510549 167510549 A G SERPINI1 Missense_Mutation p.Y218C 0.15 deleterious(0.02) probably_damaging(1) TCGA-18-3408-01 3 179301162 179301162 G A ACTL6A Missense_Mutation p.V350M 0.35 deleterious(0) possibly_damaging(0.9) TCGA-18-3408-01 3 49691576 49691576 G T BSN Missense_Mutation p.M1529I 0.56 unknown(0) TCGA-18-3408-01 3 71027024 71027030 TGGGTCC - FOXP1 Frame_Shift_Del p.G435Sfs*39 0.42 TCGA-18-3408-01 3 77651403 77651403 C T ROBO2 Missense_Mutation p.T982M 0.14 tolerated(0.09) possibly_damaging(0.791) TCGA-18-3408-01 4 123160881 123160881 T C KIAA1109 Silent p.S1348S 0.44 TCGA-18-3408-01 4 126373089 126373089 G A FAT4 Missense_Mutation p.D3640N 0.26 probably_damaging(0.998) TCGA-18-3408-01 4 185580549 185580549 T G PRIMPOL Missense_Mutation p.L79R 0.37 probably_damaging(0.999) TCGA-18-3408-01 4 189065213 189065213 G T TRIML1 Missense_Mutation p.C261F 0.43 tolerated(0.14) possibly_damaging(0.766) TCGA-18-3408-01 4 5016829 5016829 G A CYTL1 3'UTR 0.42 TCGA-18-3408-01 4 87622769 87622769 C G PTPN13 Missense_Mutation p.P337R 0.29 deleterious(0.05) possibly_damaging(0.802) TCGA-18-3408-01 5 132039185 132039185 T C KIF3A Missense_Mutation p.E452G 0.59 tolerated(0.06) benign(0.038) TCGA-18-3408-01 5 140502858 140502858 G C PCDHB4 Silent p.G426G 0.57 TCGA-18-3408-01 5 480068 480068 G T SLC9A3 Missense_Mutation p.F510L 0.12 deleterious(0) possibly_damaging(0.806) TCGA-18-3408-01 5 56219584 56219584 G C MIER3 Missense_Mutation p.R376G 0.68 tolerated(0.23) probably_damaging(0.999) TCGA-18-3408-01 5 7706958 7706958 A G ADCY2 Missense_Mutation p.D404G 0.35 deleterious(0) probably_damaging(1) TCGA-18-3408-01 6 33037649 33037649 T A HLA-DPA1 Missense_Mutation p.T39S 0.27 tolerated(1) benign(0.016) TCGA-18-3408-01 6 33235042 33235042 G A VPS52 Missense_Mutation p.R350C 0.39 deleterious(0) probably_damaging(1) TCGA-18-3408-01 6 35837623 35837624 - C SRPK1 Frame_Shift_Ins p.G350Wfs*6 0.25 TCGA-18-3408-01 7 137792169 137792169 T A AKR1D1 Missense_Mutation p.V233D 0.41 tolerated(0.59) benign(0.34) TCGA-18-3408-01 7 41729508 41729508 C T INHBA Missense_Mutation p.A341T 0.31 deleterious(0) probably_damaging(0.933) TCGA-18-3408-01 7 82538245 82538245 T C PCLO Missense_Mutation p.K4462R 0.21 unknown(0) TCGA-18-3408-01 8 144621138 144621138 A C ZC3H3 Silent p.S133S 0.07 TCGA-18-3408-01 8 1497207 1497207 C A DLGAP2 Missense_Mutation p.F116L 0.50 tolerated(0.07) benign(0.049) TCGA-18-3408-01 8 22887122 22887122 C A TNFRSF10B Splice_Site p.X159_splice 0.38 TCGA-18-3408-01 8 28988133 28988133 G T KIF13B Missense_Mutation p.Q998K 0.28 deleterious(0) benign(0.138) TCGA-18-3408-01 9 22451953 22451953 A G DMRTA1 3'UTR 0.27 TCGA-18-3408-01 9 35826091 35826091 T C FAM221B Missense_Mutation p.K23R 0.32 deleterious(0.02) probably_damaging(0.957) TCGA-18-3408-01 X 104478546 104478547 - A IL1RAPL2 Frame_Shift_Ins p.E135Rfs*3 0.40 TCGA-18-3408-01 X 12904135 12904135 G T TLR7 Nonsense_Mutation p.E170* 0.11 TCGA-18-3408-01 X 12938148 12938148 G T TLR8 Missense_Mutation p.G330V 0.49 deleterious(0) probably_damaging(0.973) TCGA-18-3408-01 X 145075861 145075861 G A MIR890 RNA 0.06 TCGA-18-3408-01 X 18911563 18911563 G T PHKA2 3'UTR 0.45 TCGA-18-3408-01 X 39932857 39932857 G T BCOR Missense_Mutation p.T581N 0.10 tolerated(0.49) benign(0.003) TCGA-18-3408-01 X 54099692 54099692 A T FAM120C Missense_Mutation p.L1022Q 0.24 tolerated_low_confidence(0.34) benign(0.206) TCGA-18-3408-01 X 73963358 73963358 C A KIAA2022 Missense_Mutation p.C345F 0.46 deleterious(0) probably_damaging(1) TCGA-18-3408-01 X 76937603 76937603 T - ATRX Frame_Shift_Del p.I1049* 0.12 TCGA-18-3409-01 10 101643884 101643884 C T DNMBP Missense_Mutation p.R1294Q 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-18-3409-01 10 102683984 102683984 C T FAM178A Missense_Mutation p.P409L 0.18 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 10 103360569 103360569 C T DPCD Silent p.L74L 0.24 TCGA-18-3409-01 10 104141932 104141932 C T GBF1 Missense_Mutation p.P1807S 0.38 tolerated_low_confidence(0.08) probably_damaging(0.99) TCGA-18-3409-01 10 104503739 104503739 G A WBP1L 5'UTR 0.33 TCGA-18-3409-01 10 105006259 105006259 C T RPEL1 Missense_Mutation p.S169F 0.27 tolerated(0.07) possibly_damaging(0.635) TCGA-18-3409-01 10 105046812 105046812 G A INA Silent p.E362E 0.44 TCGA-18-3409-01 10 105046855 105046855 C T INA Missense_Mutation p.R377W 0.51 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 10 105361813 105361813 G A SH3PXD2A Silent p.P1026P 0.29 TCGA-18-3409-01 10 105944865 105944865 G A WDR96 Missense_Mutation p.H684Y 0.42 tolerated(0.13) benign(0.395) TCGA-18-3409-01 10 106974253 106974253 C T SORCS3 Missense_Mutation p.T810I 0.19 deleterious(0.04) benign(0.003) TCGA-18-3409-01 10 108366968 108366968 C T SORCS1 Missense_Mutation p.D1041N 0.31 tolerated(1) benign(0.006) TCGA-18-3409-01 10 108437114 108437114 G A SORCS1 Silent p.L597L 0.40 TCGA-18-3409-01 10 112337612 112337612 C T SMC3 Missense_Mutation p.S97L 0.11 tolerated(0.64) benign(0.179) TCGA-18-3409-01 10 114043501 114043501 G A TECTB Silent p.T3T 0.16 TCGA-18-3409-01 10 115383302 115383302 C T NRAP Missense_Mutation p.D815N 0.50 tolerated(0.32) benign(0.371) TCGA-18-3409-01 10 115457308 115457308 A G CASP7 Missense_Mutation p.E52G 0.32 tolerated(0.2) benign(0.002) TCGA-18-3409-01 10 115529619 115529619 C T PLEKHS1 Missense_Mutation p.A165V 0.38 tolerated(0.36) benign(0.077) TCGA-18-3409-01 10 115885742 115885742 G A C10orf118 Missense_Mutation p.P839L 0.37 tolerated(0.07) benign(0.011) TCGA-18-3409-01 10 115947891 115947891 G A TDRD1 Missense_Mutation p.G101R 0.48 deleterious(0.04) probably_damaging(0.991) TCGA-18-3409-01 10 115947893 115947893 A T TDRD1 Silent p.G101G 0.46 TCGA-18-3409-01 10 115964521 115964521 G A TDRD1 Missense_Mutation p.G389E 0.15 tolerated(0.11) probably_damaging(0.998) TCGA-18-3409-01 10 116038536 116038536 C T VWA2 Silent p.F253F 0.38 TCGA-18-3409-01 10 117061501 117061501 C T ATRNL1 Silent p.I922I 0.48 TCGA-18-3409-01 10 118306827 118306827 G A PNLIP Missense_Mutation p.R23K 0.17 tolerated(0.11) benign(0.005) TCGA-18-3409-01 10 118318691 118318691 G A PNLIP Missense_Mutation p.G319E 0.32 tolerated(1) benign(0.002) TCGA-18-3409-01 10 119044399 119044399 G A PDZD8 Silent p.L615L 0.29 TCGA-18-3409-01 10 120933973 120933973 G A PRDX3 Missense_Mutation p.P101S 0.34 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 10 121182680 121182680 C T GRK5 Silent p.S114S 0.17 TCGA-18-3409-01 10 12162808 12162808 C T DHTKD1 Missense_Mutation p.P894L 0.22 tolerated(0.28) benign(0.097) TCGA-18-3409-01 10 124339165 124339165 T A DMBT1 Missense_Mutation p.Y251N 0.34 deleterious(0.05) probably_damaging(0.988) TCGA-18-3409-01 10 124671195 124671195 C G FAM24A Missense_Mutation p.I15M 0.34 deleterious(0) probably_damaging(0.975) TCGA-18-3409-01 10 125516831 125516831 G A CPXM2 Silent p.F605F 0.51 TCGA-18-3409-01 10 126370572 126370572 G A FAM53B Silent p.L170L 0.30 TCGA-18-3409-01 10 126715951 126715951 G A CTBP2 Silent p.L126L 0.37 TCGA-18-3409-01 10 127503624 127503624 C T UROS Missense_Mutation p.E75K 0.50 tolerated(0.37) benign(0.005) TCGA-18-3409-01 10 128114446 128114446 C T C10orf90 Missense_Mutation p.R696K 0.29 deleterious(0) probably_damaging(0.996) TCGA-18-3409-01 10 128193239 128193239 G A C10orf90 Missense_Mutation p.P177L 0.28 deleterious(0.01) possibly_damaging(0.826) TCGA-18-3409-01 10 128974270 128974270 G A FAM196A Silent p.L130L 0.31 TCGA-18-3409-01 10 131506293 131506293 C T MGMT Missense_Mutation p.P118L 0.42 deleterious(0.03) probably_damaging(0.998) TCGA-18-3409-01 10 133107540 133107540 G T TCERG1L Missense_Mutation p.P122Q 0.33 deleterious(0) probably_damaging(0.91) TCGA-18-3409-01 10 133107541 133107541 G A TCERG1L Missense_Mutation p.P122S 0.32 deleterious(0) possibly_damaging(0.449) TCGA-18-3409-01 10 13323110 13323110 C T PHYH Missense_Mutation p.A277T 0.22 deleterious(0.02) possibly_damaging(0.801) TCGA-18-3409-01 10 13323111 13323111 C G PHYH Splice_Site p.X277_splice 0.26 TCGA-18-3409-01 10 133769400 133769400 C T PPP2R2D Missense_Mutation p.P401L 0.33 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 10 133930772 133930772 G A JAKMIP3 Silent p.K109K 0.20 TCGA-18-3409-01 10 134006186 134006186 C T DPYSL4 Silent p.V51V 0.22 TCGA-18-3409-01 10 135000137 135000137 C T KNDC1 Missense_Mutation p.P429S 0.14 tolerated(0.83) benign(0.004) TCGA-18-3409-01 10 135099073 135099073 G A TUBGCP2 Silent p.T622T 0.27 TCGA-18-3409-01 10 135197503 135197503 C T PAOX Missense_Mutation p.P303L 0.35 deleterious(0.01) probably_damaging(0.949) TCGA-18-3409-01 10 135369172 135369172 G A SYCE1 Silent p.L253L 0.44 TCGA-18-3409-01 10 15614224 15614224 G A ITGA8 Missense_Mutation p.P875S 0.30 tolerated(0.07) benign(0.052) TCGA-18-3409-01 10 16796894 16796894 G A RSU1 Missense_Mutation p.L126F 0.35 tolerated(0.1) probably_damaging(0.971) TCGA-18-3409-01 10 16867061 16867061 G A CUBN Silent p.F3595F 0.23 TCGA-18-3409-01 10 16955826 16955826 T A CUBN Missense_Mutation p.N2506I 0.17 tolerated(0.17) benign(0.016) TCGA-18-3409-01 10 16957035 16957035 C T CUBN Missense_Mutation p.M2449I 0.29 tolerated(0.39) benign(0.007) TCGA-18-3409-01 10 16967273 16967273 C T CUBN Missense_Mutation p.G2205R 0.26 deleterious(0) probably_damaging(1) TCGA-18-3409-01 10 16967623 16967623 G A CUBN Missense_Mutation p.P2141L 0.42 tolerated(0.1) benign(0.013) TCGA-18-3409-01 10 17032459 17032459 G A CUBN Silent p.P1408P 0.24 TCGA-18-3409-01 10 17087150 17087150 G A CUBN Silent p.F1176F 0.35 TCGA-18-3409-01 10 17088080 17088080 C T CUBN Missense_Mutation p.E1115K 0.28 deleterious(0.01) probably_damaging(0.991) TCGA-18-3409-01 10 17113553 17113553 G A CUBN Missense_Mutation p.P833S 0.41 deleterious(0.04) probably_damaging(0.999) TCGA-18-3409-01 10 17195398 17195398 G A TRDMT1 Intron 0.33 TCGA-18-3409-01 10 17275769 17275769 G A VIM Missense_Mutation p.E241K 0.20 deleterious(0) benign(0.323) TCGA-18-3409-01 10 17363050 17363050 C T ST8SIA6 Missense_Mutation p.G342R 0.21 deleterious(0) probably_damaging(1) TCGA-18-3409-01 10 17363177 17363177 G A ST8SIA6 Silent p.F299F 0.22 TCGA-18-3409-01 10 17641303 17641303 G A PTPLA Silent p.F197F 0.47 TCGA-18-3409-01 10 17949609 17949609 C T MRC1L1 Missense_Mutation p.P1325S 0.37 probably_damaging(0.909) TCGA-18-3409-01 10 18196522 18196522 C T MRC1 Missense_Mutation p.P1325S 0.33 tolerated(0.07) probably_damaging(1) TCGA-18-3409-01 10 18834989 18834989 G A NSUN6 Missense_Mutation p.A428V 0.30 tolerated(0.56) benign(0.001) TCGA-18-3409-01 10 25312772 25312772 C T THNSL1 Missense_Mutation p.A207V 0.17 tolerated(0.27) benign(0.016) TCGA-18-3409-01 10 25887663 25887663 G A GPR158 Missense_Mutation p.M1036I 0.17 tolerated(0.18) benign(0.007) TCGA-18-3409-01 10 25887664 25887664 G A GPR158 Missense_Mutation p.E1037K 0.18 tolerated(0.5) benign(0.011) TCGA-18-3409-01 10 26414347 26414347 C T MYO3A Missense_Mutation p.R642W 0.38 deleterious(0) possibly_damaging(0.67) TCGA-18-3409-01 10 26414396 26414396 G A MYO3A Missense_Mutation p.R658K 0.35 tolerated(0.06) possibly_damaging(0.585) TCGA-18-3409-01 10 26781271 26781271 G A APBB1IP Missense_Mutation p.E6K 0.39 deleterious(0.01) benign(0.294) TCGA-18-3409-01 10 26800681 26800681 C T APBB1IP Silent p.V179V 0.30 TCGA-18-3409-01 10 28878666 28878666 C T WAC Missense_Mutation p.P128L 0.23 tolerated(0.07) benign(0.033) TCGA-18-3409-01 10 28905255 28905255 C T WAC Silent p.H570H 0.20 TCGA-18-3409-01 10 30306787 30306787 G A KIAA1462 3'UTR 0.39 TCGA-18-3409-01 10 30315231 30315231 C T KIAA1462 Silent p.Q1282Q 0.39 TCGA-18-3409-01 10 30317559 30317559 C T KIAA1462 Silent p.G506G 0.32 TCGA-18-3409-01 10 30317560 30317560 C T KIAA1462 Missense_Mutation p.G506E 0.32 tolerated(0.3) benign(0.009) TCGA-18-3409-01 10 31137767 31137767 G A ZNF438 Nonsense_Mutation p.R523* 0.44 TCGA-18-3409-01 10 32103268 32103268 T C ARHGAP12 Missense_Mutation p.I585V 0.44 tolerated(0.19) benign(0) TCGA-18-3409-01 10 32856633 32856633 C T CCDC7 Silent p.F411F 0.16 TCGA-18-3409-01 10 33559651 33559651 C T NRP1 Missense_Mutation p.E128K 0.30 tolerated(0.17) probably_damaging(0.984) TCGA-18-3409-01 10 34759113 34759113 G A PARD3 Missense_Mutation p.S161F 0.30 deleterious(0) benign(0.308) TCGA-18-3409-01 10 35468222 35468222 C T CREM Intron 0.24 TCGA-18-3409-01 10 37418828 37418828 C T ANKRD30A Silent p.L21L 0.21 TCGA-18-3409-01 10 37436363 37436363 G A ANKRD30A Missense_Mutation p.M451I 0.32 tolerated(0.5) benign(0.107) TCGA-18-3409-01 10 43015745 43015745 T A ZNF37BP RNA 0.19 TCGA-18-3409-01 10 43088170 43088170 T A ZNF33B Missense_Mutation p.H743L 0.44 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 10 43882454 43882454 C T HNRNPF Missense_Mutation p.M293I 0.30 deleterious(0.03) probably_damaging(0.968) TCGA-18-3409-01 10 45959739 45959739 C T MARCH8 Missense_Mutation p.V64M 0.26 tolerated(0.13) benign(0.208) TCGA-18-3409-01 10 47086879 47086879 A T NPY4R Missense_Mutation p.E32D 0.09 tolerated(1) benign(0.001) TCGA-18-3409-01 10 47087301 47087301 C T NPY4R Missense_Mutation p.P173L 0.11 deleterious(0) probably_damaging(1) TCGA-18-3409-01 10 47087788 47087788 C T NPY4R Silent p.A335A 0.12 TCGA-18-3409-01 10 48371416 48371416 G A ZNF488 Missense_Mutation p.R295Q 0.17 deleterious(0.01) probably_damaging(0.995) TCGA-18-3409-01 10 48390628 48390628 C T RBP3 Missense_Mutation p.D84N 0.33 deleterious(0) probably_damaging(0.994) TCGA-18-3409-01 10 48414135 48414135 G A GDF2 Missense_Mutation p.P245S 0.23 tolerated(0.9) benign(0.114) TCGA-18-3409-01 10 49392620 49392620 G A FRMPD2 Missense_Mutation p.S858F 0.33 deleterious(0) probably_damaging(0.976) TCGA-18-3409-01 10 50315891 50315891 C T VSTM4 Missense_Mutation p.D69N 0.42 tolerated(0.58) benign(0.005) TCGA-18-3409-01 10 50363915 50363915 C T C10orf128 3'UTR 0.23 TCGA-18-3409-01 10 50954808 50954808 G A OGDHL Silent p.V428V 0.35 TCGA-18-3409-01 10 5435743 5435743 C T TUBAL3 Missense_Mutation p.V360M 0.42 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-18-3409-01 10 5435744 5435744 C T TUBAL3 Silent p.K359K 0.41 TCGA-18-3409-01 10 5435781 5435781 G A TUBAL3 Missense_Mutation p.S347F 0.20 deleterious_low_confidence(0) possibly_damaging(0.869) TCGA-18-3409-01 10 54528129 54528129 C T MBL2 Missense_Mutation p.G172E 0.20 tolerated(0.1) benign(0.001) TCGA-18-3409-01 10 5498921 5498921 C T NET1 Silent p.A585A 0.16 TCGA-18-3409-01 10 55569161 55569161 A G PCDH15 Missense_Mutation p.F484S 0.29 deleterious_low_confidence(0) unknown(0) TCGA-18-3409-01 10 56423959 56423959 C T PCDH15 Missense_Mutation p.E22K 0.28 tolerated_low_confidence(0.56) benign(0.011) TCGA-18-3409-01 10 6063598 6063598 G A IL2RA Silent p.F142F 0.27 TCGA-18-3409-01 10 61834736 61834736 A C ANK3 Missense_Mutation p.V1968G 0.26 benign(0.266) TCGA-18-3409-01 10 63852622 63852631 CCGACAAATT - ARID5B Frame_Shift_Del p.P1134Lfs*14 0.36 TCGA-18-3409-01 10 64573279 64573279 C T EGR2 Silent p.R373R 0.17 TCGA-18-3409-01 10 64573280 64573280 C T EGR2 Missense_Mutation p.R373Q 0.17 deleterious(0) possibly_damaging(0.857) TCGA-18-3409-01 10 64573955 64573955 G A EGR2 Missense_Mutation p.P148L 0.18 deleterious(0.04) benign(0.02) TCGA-18-3409-01 10 68979601 68979601 C T CTNNA3 Missense_Mutation p.E203K 0.24 deleterious(0.01) possibly_damaging(0.549) TCGA-18-3409-01 10 69583138 69583138 G A DNAJC12 Silent p.L31L 0.31 TCGA-18-3409-01 10 69970361 69970361 G A MYPN 3'UTR 0.36 TCGA-18-3409-01 10 69970362 69970362 G A MYPN 3'UTR 0.36 TCGA-18-3409-01 10 70507168 70507168 C T CCAR1 Missense_Mutation p.P224L 0.35 deleterious(0.02) benign(0.407) TCGA-18-3409-01 10 70917876 70917876 C T VPS26A Missense_Mutation p.L154F 0.17 tolerated(0.27) benign(0.01) TCGA-18-3409-01 10 71860028 71860028 C T H2AFY2 Silent p.S251S 0.47 TCGA-18-3409-01 10 71877624 71877624 G A AIFM2 Missense_Mutation p.S187F 0.30 deleterious(0.05) benign(0.021) TCGA-18-3409-01 10 7218107 7218107 C T SFMBT2 Missense_Mutation p.R610K 0.24 deleterious(0) probably_damaging(0.996) TCGA-18-3409-01 10 72358637 72358637 C T PRF1 Silent p.E280E 0.26 TCGA-18-3409-01 10 7239571 7239571 C T SFMBT2 Missense_Mutation p.G546E 0.14 deleterious(0) probably_damaging(1) TCGA-18-3409-01 10 7327690 7327690 G A SFMBT2 Intron 0.24 TCGA-18-3409-01 10 73567419 73567419 C T CDH23 Missense_Mutation p.P579S 0.39 tolerated(0.82) benign(0.003) TCGA-18-3409-01 10 74631134 74631134 G A MCU Splice_Site p.X220_splice 0.21 TCGA-18-3409-01 10 74645606 74645606 C A MCU 3'UTR 0.36 TCGA-18-3409-01 10 74790090 74790090 C T P4HA1 Missense_Mutation p.R396Q 0.33 tolerated(0.15) benign(0.007) TCGA-18-3409-01 10 75157985 75157985 G A ANXA7 Silent p.G71G 0.18 TCGA-18-3409-01 10 75239120 75239120 G A PPP3CB Missense_Mutation p.L81F 0.24 tolerated(0.07) benign(0.175) TCGA-18-3409-01 10 75481212 75481212 G A RP11-574K11.28 RNA 0.30 TCGA-18-3409-01 10 75557002 75557002 C T ZSWIM8 Missense_Mutation p.P1136S 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-18-3409-01 10 75557617 75557617 C T ZSWIM8 Silent p.F1247F 0.29 TCGA-18-3409-01 10 76781946 76781946 C T KAT6B Missense_Mutation p.P1110L 0.30 benign(0.001) TCGA-18-3409-01 10 76861646 76861646 G T DUSP13 Intron 0.08 TCGA-18-3409-01 10 79566528 79566528 G A DLG5 Missense_Mutation p.P1652L 0.32 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 10 79745903 79745903 G A POLR3A Silent p.F972F 0.35 TCGA-18-3409-01 10 81680824 81680824 G A MBL1P Intron 0.31 TCGA-18-3409-01 10 82040000 82040000 G A MAT1A Missense_Mutation p.L160F 0.38 deleterious(0) probably_damaging(0.991) TCGA-18-3409-01 10 82098150 82098150 G A DYDC1 Intron 0.33 TCGA-18-3409-01 10 82098151 82098151 G A DYDC1 Intron 0.33 TCGA-18-3409-01 10 85968083 85968083 C T CDHR1 Nonsense_Mutation p.Q373* 0.35 TCGA-18-3409-01 10 85991971 85991971 G A LRIT1 Silent p.I528I 0.25 TCGA-18-3409-01 10 86012761 86012761 G A RGR Silent p.G173G 0.17 TCGA-18-3409-01 10 86198290 86198290 C T CCSER2 Missense_Mutation p.P631S 0.44 tolerated(0.13) benign(0.332) TCGA-18-3409-01 10 87373363 87373363 T C GRID1 Missense_Mutation p.K801R 0.49 tolerated(0.27) probably_damaging(0.993) TCGA-18-3409-01 10 87628904 87628904 G A GRID1 Missense_Mutation p.H272Y 0.38 tolerated(0.21) benign(0.209) TCGA-18-3409-01 10 87628913 87628913 C T GRID1 Missense_Mutation p.D269N 0.26 tolerated(0.18) benign(0.084) TCGA-18-3409-01 10 88123702 88123702 C T GRID1 Silent p.Q77Q 0.29 TCGA-18-3409-01 10 88441531 88441531 G A LDB3 Silent p.G220G 0.39 TCGA-18-3409-01 10 89516631 89516631 A G ATAD1 Missense_Mutation p.F294L 0.26 tolerated(0.27) benign(0.027) TCGA-18-3409-01 10 90356157 90356157 G A LIPJ Nonsense_Mutation p.W187* 0.31 TCGA-18-3409-01 10 90762814 90762814 C T FAS Missense_Mutation p.S20F 0.35 tolerated(0.73) benign(0.033) TCGA-18-3409-01 10 91222304 91222304 G A SLC16A12 Missense_Mutation p.S11F 0.38 deleterious_low_confidence(0.01) benign(0.14) TCGA-18-3409-01 10 93389948 93389948 C T PPP1R3C Silent p.Q230Q 0.39 TCGA-18-3409-01 10 96006327 96006327 C T PLCE1 Silent p.F1015F 0.10 TCGA-18-3409-01 10 96084289 96084289 G A PLCE1 Missense_Mutation p.G2229R 0.45 deleterious(0) probably_damaging(1) TCGA-18-3409-01 10 96084290 96084290 G A PLCE1 Missense_Mutation p.G2229E 0.46 deleterious(0) probably_damaging(1) TCGA-18-3409-01 10 96522510 96522510 C T CYP2C19 Silent p.L16L 0.24 TCGA-18-3409-01 10 96541623 96541623 C T CYP2C19 Missense_Mutation p.H230Y 0.30 deleterious(0.02) benign(0.431) TCGA-18-3409-01 10 96541692 96541692 G A CYP2C19 Missense_Mutation p.E253K 0.32 tolerated(0.31) benign(0.007) TCGA-18-3409-01 10 97194428 97194428 G A SORBS1 Silent p.I41I 0.20 TCGA-18-3409-01 10 97918954 97918954 C T ZNF518A RNA 0.25 TCGA-18-3409-01 10 98303964 98303964 C T TM9SF3 Splice_Site p.X352_splice 0.27 TCGA-18-3409-01 10 98742645 98742645 C T C10orf12 Missense_Mutation p.P500S 0.35 tolerated(0.1) possibly_damaging(0.628) TCGA-18-3409-01 10 98766300 98766300 C T SLIT1 Silent p.R1173R 0.46 TCGA-18-3409-01 10 98766422 98766422 C T SLIT1 Missense_Mutation p.G1133R 0.55 tolerated(0.64) benign(0.004) TCGA-18-3409-01 10 99344393 99344393 T C PI4K2A 5'UTR 0.28 TCGA-18-3409-01 10 99349623 99349623 G A C10orf62 5'UTR 0.25 TCGA-18-3409-01 10 99376965 99376965 C T MORN4 Missense_Mutation p.R61K 0.35 tolerated(0.59) benign(0.22) TCGA-18-3409-01 11 100933363 100933363 G A PGR Missense_Mutation p.S676L 0.30 deleterious(0.03) benign(0.184) TCGA-18-3409-01 11 102391426 102391426 G A MMP7 3'UTR 0.62 TCGA-18-3409-01 11 1025323 1025323 C T MUC6 Silent p.G948G 0.14 TCGA-18-3409-01 11 102593196 102593196 C T MMP8 Missense_Mutation p.G104E 0.49 deleterious(0.02) benign(0.331) TCGA-18-3409-01 11 102661252 102661252 C T MMP1 Missense_Mutation p.G434E 0.42 deleterious(0.03) possibly_damaging(0.491) TCGA-18-3409-01 11 103107179 103107179 C T DYNC2H1 Missense_Mutation p.L3244F 0.24 possibly_damaging(0.481) TCGA-18-3409-01 11 103908634 103908634 C T DDI1 Missense_Mutation p.P362S 0.53 tolerated(0.2) benign(0.033) TCGA-18-3409-01 11 104820346 104820346 G A CASP4 Silent p.F235F 0.24 TCGA-18-3409-01 11 10585747 10585747 C T LYVE1 Intron 0.17 TCGA-18-3409-01 11 10585793 10585793 C T LYVE1 Missense_Mutation p.D72N 0.27 tolerated(0.3) benign(0.012) TCGA-18-3409-01 11 107197599 107197599 G A CWF19L2 3'UTR 0.23 TCGA-18-3409-01 11 107501162 107501162 C T ELMOD1 Silent p.L13L 0.33 TCGA-18-3409-01 11 108385421 108385421 G A EXPH5 Silent p.I271I 0.38 TCGA-18-3409-01 11 110450853 110450853 G A ARHGAP20 Silent p.S939S 0.38 TCGA-18-3409-01 11 111156674 111156674 C T C11orf53 Silent p.S202S 0.39 TCGA-18-3409-01 11 111746473 111746473 A T FDXACB1 Missense_Mutation p.S350T 0.18 deleterious(0) probably_damaging(0.997) TCGA-18-3409-01 11 113661264 113661264 G A ATF4P4 RNA 0.58 TCGA-18-3409-01 11 113661265 113661265 G A ATF4P4 RNA 0.58 TCGA-18-3409-01 11 113813828 113813828 A G HTR3B Missense_Mutation p.K274R 0.38 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 11 116619214 116619214 C T BUD13 Missense_Mutation p.S615N 0.16 deleterious(0) probably_damaging(0.996) TCGA-18-3409-01 11 116655826 116655826 G A ZNF259 Missense_Mutation p.L248F 0.40 tolerated(0.07) benign(0.01) TCGA-18-3409-01 11 116729286 116729286 G A SIK3 Silent p.T859T 0.26 TCGA-18-3409-01 11 117253651 117253651 C T CEP164 Missense_Mutation p.P573S 0.53 tolerated(0.09) benign(0.133) TCGA-18-3409-01 11 117280365 117280365 G A CEP164 Silent p.K1260K 0.43 TCGA-18-3409-01 11 117306409 117306409 G A DSCAML1 Silent p.L1669L 0.41 TCGA-18-3409-01 11 118235859 118235859 C T UBE4A Silent p.L22L 0.29 TCGA-18-3409-01 11 118376855 118376855 G A KMT2A Silent p.Q3416Q 0.23 TCGA-18-3409-01 11 118769513 118769513 G C BCL9L Missense_Mutation p.P1371A 0.27 possibly_damaging(0.514) TCGA-18-3409-01 11 118923096 118923096 G A HYOU1 Missense_Mutation p.R345C 0.40 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 11 118951947 118951947 C T VPS11 Missense_Mutation p.P861S 0.37 tolerated(0.11) benign(0.22) TCGA-18-3409-01 11 118978881 118978881 G A DPAGT1 5'UTR 0.44 TCGA-18-3409-01 11 119003908 119003908 C T HINFP Missense_Mutation p.P373L 0.28 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 11 119031280 119031280 C T ABCG4 Silent p.I543I 0.39 TCGA-18-3409-01 11 119063871 119063871 C T CCDC153 Silent p.R113R 0.21 TCGA-18-3409-01 11 119155697 119155697 C T CBL Missense_Mutation p.P484S 0.35 deleterious(0.05) possibly_damaging(0.728) TCGA-18-3409-01 11 119996472 119996472 G A TRIM29 Silent p.C420C 0.21 TCGA-18-3409-01 11 119996473 119996473 C A TRIM29 Missense_Mutation p.C420F 0.21 deleterious(0) possibly_damaging(0.883) TCGA-18-3409-01 11 120823587 120823587 C T GRIK4 Silent p.S538S 0.15 TCGA-18-3409-01 11 120916532 120916532 G A TBCEL Missense_Mutation p.D45N 0.43 deleterious_low_confidence(0.02) probably_damaging(0.935) TCGA-18-3409-01 11 120989408 120989408 G A TECTA Missense_Mutation p.G395E 0.20 deleterious(0.01) possibly_damaging(0.515) TCGA-18-3409-01 11 121028816 121028816 C T TECTA Silent p.S1524S 0.36 TCGA-18-3409-01 11 121032794 121032794 C T TECTA Missense_Mutation p.P1663S 0.22 tolerated(0.41) benign(0) TCGA-18-3409-01 11 121403216 121403216 G A SORL1 Missense_Mutation p.G547E 0.42 deleterious(0) probably_damaging(1) TCGA-18-3409-01 11 121986431 121986431 A G BLID Missense_Mutation p.L67P 0.35 tolerated_low_confidence(0.09) probably_damaging(0.955) TCGA-18-3409-01 11 123471189 123471189 C T GRAMD1B Missense_Mutation p.S185L 0.41 deleterious(0) possibly_damaging(0.536) TCGA-18-3409-01 11 123756054 123756054 C T TMEM225 Missense_Mutation p.G27R 0.40 deleterious(0) probably_damaging(0.995) TCGA-18-3409-01 11 123810609 123810609 G A OR4D5 Missense_Mutation p.G96R 0.15 deleterious(0) benign(0.08) TCGA-18-3409-01 11 123814038 123814038 C T OR6T1 Missense_Mutation p.G170S 0.42 tolerated(0.1) benign(0.259) TCGA-18-3409-01 11 123900675 123900675 G A OR10G8 Missense_Mutation p.V116I 0.39 tolerated(0.06) benign(0.109) TCGA-18-3409-01 11 123989018 123989018 G A VWA5A Silent p.A123A 0.23 TCGA-18-3409-01 11 124120969 124120969 C T OR8G1 Missense_Mutation p.P183S 0.23 tolerated_low_confidence(0.07) benign(0.074) TCGA-18-3409-01 11 124310855 124310855 G A OR8B8 Silent p.L43L 0.40 TCGA-18-3409-01 11 124413056 124413056 C T OR8B12 Silent p.L165L 0.36 TCGA-18-3409-01 11 124508525 124508525 C T SIAE Silent p.K411K 0.42 TCGA-18-3409-01 11 124517323 124517323 C T SIAE Missense_Mutation p.E302K 0.36 tolerated(0.57) benign(0.004) TCGA-18-3409-01 11 124947395 124947395 C T SLC37A2 Silent p.L95L 0.27 TCGA-18-3409-01 11 125280123 125280123 C T PKNOX2 Missense_Mutation p.S207F 0.19 deleterious(0.01) benign(0.001) TCGA-18-3409-01 11 125472276 125472276 C T STT3A Silent p.A76A 0.30 TCGA-18-3409-01 11 125880416 125880416 G A CDON Nonsense_Mutation p.R458* 0.40 TCGA-18-3409-01 11 1262555 1262555 C T MUC5B Missense_Mutation p.S1482L 0.40 unknown(0) TCGA-18-3409-01 11 126333112 126333112 G A KIRREL3 Missense_Mutation p.R228C 0.21 deleterious(0) probably_damaging(0.939) TCGA-18-3409-01 11 1264385 1264385 C T MUC5B Missense_Mutation p.P2092L 0.33 unknown(0) TCGA-18-3409-01 11 1267841 1267841 C G MUC5B Missense_Mutation p.S3244C 0.24 unknown(0) TCGA-18-3409-01 11 1269838 1269838 C T MUC5B Missense_Mutation p.P3910S 0.23 unknown(0) TCGA-18-3409-01 11 1271670 1271670 C A MUC5B Silent p.T4520T 0.35 TCGA-18-3409-01 11 1271723 1271723 C T MUC5B Missense_Mutation p.S4538L 0.16 unknown(0) TCGA-18-3409-01 11 1272395 1272395 G A MUC5B Nonsense_Mutation p.W4762* 0.19 TCGA-18-3409-01 11 128781486 128781486 C T KCNJ5 Silent p.F106F 0.25 TCGA-18-3409-01 11 128839068 128839068 C T ARHGAP32 Missense_Mutation p.D2000N 0.44 deleterious_low_confidence(0) possibly_damaging(0.627) TCGA-18-3409-01 11 128839539 128839539 C T ARHGAP32 Missense_Mutation p.G1843R 0.39 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-18-3409-01 11 129321220 129321220 C T BARX2 Missense_Mutation p.P255S 0.24 tolerated_low_confidence(0.3) benign(0.017) TCGA-18-3409-01 11 129812365 129812365 A G PRDM10 Missense_Mutation p.Y308H 0.22 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 11 133795713 133795713 C A IGSF9B Missense_Mutation p.R652L 0.24 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 11 14480174 14480174 A C COPB1 Silent p.G902G 0.28 TCGA-18-3409-01 11 1492537 1492537 G A MOB2 Missense_Mutation p.P160S 0.29 deleterious(0) probably_damaging(1) TCGA-18-3409-01 11 1606160 1606160 C T KRTAP5-1 Missense_Mutation p.G107E 0.14 deleterious_low_confidence(0) unknown(0) TCGA-18-3409-01 11 1606161 1606161 C T KRTAP5-1 Missense_Mutation p.G107R 0.14 deleterious_low_confidence(0) unknown(0) TCGA-18-3409-01 11 1651422 1651422 G A KRTAP5-5 Missense_Mutation p.G118S 0.25 deleterious_low_confidence(0.04) unknown(0) TCGA-18-3409-01 11 1651541 1651541 C T KRTAP5-5 Silent p.S157S 0.21 TCGA-18-3409-01 11 1651586 1651615 CTGCTGCCAGTCCAGCTGCTGTAAGCCTTA - KRTAP5-5 In_Frame_Del p.Y192_P201del 0.65 TCGA-18-3409-01 11 17485036 17485036 C T ABCC8 Silent p.V176V 0.36 TCGA-18-3409-01 11 18291468 18291468 G A SAA1 3'UTR 0.23 TCGA-18-3409-01 11 18301373 18301373 G A HPS5 3'UTR 0.40 TCGA-18-3409-01 11 18503269 18503269 G A TSG101 Silent p.L331L 0.32 TCGA-18-3409-01 11 20112443 20112443 C T NAV2 Missense_Mutation p.T1903I 0.36 tolerated(0.96) probably_damaging(0.997) TCGA-18-3409-01 11 20178223 20178223 C T DBX1 Missense_Mutation p.R229K 0.20 tolerated_low_confidence(0.18) benign(0.003) TCGA-18-3409-01 11 20385820 20385820 G A HTATIP2 Missense_Mutation p.D47N 0.38 tolerated(0.54) benign(0.002) TCGA-18-3409-01 11 22283680 22283680 C T ANO5 Missense_Mutation p.P546S 0.32 deleterious(0.01) probably_damaging(1) TCGA-18-3409-01 11 22360119 22360119 G A SLC17A6 Missense_Mutation p.E14K 0.29 deleterious(0) possibly_damaging(0.493) TCGA-18-3409-01 11 2434714 2434714 G A TRPM5 Silent p.I665I 0.36 TCGA-18-3409-01 11 27520145 27520145 G A LIN7C 3'UTR 0.47 TCGA-18-3409-01 11 293670 293670 G A ATHL1 Silent p.R519R 0.41 TCGA-18-3409-01 11 2946470 2946470 C T SLC22A18 3'UTR 0.30 TCGA-18-3409-01 11 30032975 30032975 G A KCNA4 Silent p.I417I 0.44 TCGA-18-3409-01 11 30433031 30433031 T C MPPED2 Missense_Mutation p.N290S 0.40 tolerated(0.18) possibly_damaging(0.455) TCGA-18-3409-01 11 30925158 30925158 G A DCDC1 Missense_Mutation p.P1461S 0.40 tolerated(0.79) benign(0) TCGA-18-3409-01 11 33055066 33055066 C T DEPDC7 3'UTR 0.22 TCGA-18-3409-01 11 33117897 33117897 G A CSTF3 Missense_Mutation p.P444S 0.17 tolerated(0.21) possibly_damaging(0.553) TCGA-18-3409-01 11 33566521 33566521 G A KIAA1549L Silent p.K697K 0.22 TCGA-18-3409-01 11 34152386 34152386 C T NAT10 Missense_Mutation p.S424F 0.20 deleterious(0) probably_damaging(0.992) TCGA-18-3409-01 11 35308473 35308473 G A SLC1A2 Missense_Mutation p.R373C 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-18-3409-01 11 35313888 35313888 G A SLC1A2 Missense_Mutation p.S346F 0.38 tolerated(0.23) benign(0.197) TCGA-18-3409-01 11 36467879 36467879 C T PRR5L Silent p.S158S 0.32 TCGA-18-3409-01 11 4091353 4091353 C T STIM1 Silent p.S237S 0.34 TCGA-18-3409-01 11 44069583 44069583 G A ACCSL 5'UTR 0.22 TCGA-18-3409-01 11 45672150 45672150 C T CHST1 Silent p.K108K 0.22 TCGA-18-3409-01 11 46407137 46407137 G A CHRM4 Missense_Mutation p.P324L 0.28 tolerated(0.27) benign(0.048) TCGA-18-3409-01 11 47297704 47297704 G A MADD Missense_Mutation p.G305D 0.39 deleterious(0) probably_damaging(1) TCGA-18-3409-01 11 47306552 47306552 C T MADD Missense_Mutation p.P740S 0.34 tolerated_low_confidence(0.12) benign(0.001) TCGA-18-3409-01 11 47306553 47306553 C T MADD Missense_Mutation p.P740L 0.33 deleterious_low_confidence(0.03) benign(0.001) TCGA-18-3409-01 11 47446030 47446030 G A PSMC3 Missense_Mutation p.P135S 0.38 deleterious(0.05) benign(0.323) TCGA-18-3409-01 11 47594481 47594481 C T KBTBD4 3'UTR 0.44 TCGA-18-3409-01 11 47834527 47834527 T C NUP160 Missense_Mutation p.D620G 0.33 deleterious(0.03) benign(0.009) TCGA-18-3409-01 11 48239290 48239290 G A OR4B1 Silent p.%3D 0.19 TCGA-18-3409-01 11 48511133 48511133 C T OR4A47 Silent p.F263F 0.21 TCGA-18-3409-01 11 4869963 4869963 C T OR51S1 Missense_Mutation p.R159Q 0.42 deleterious(0.01) benign(0.161) TCGA-18-3409-01 11 49831620 49831620 C T RP11-707M1.1 RNA 0.40 TCGA-18-3409-01 11 5012670 5012670 G A MMP26 Missense_Mutation p.G180E 0.17 tolerated(0.5) benign(0.002) TCGA-18-3409-01 11 5079909 5079909 C T OR52E2 Missense_Mutation p.E317K 0.37 tolerated_low_confidence(0.63) benign(0.001) TCGA-18-3409-01 11 5254288 5254288 C T HBD Missense_Mutation p.R117H 0.35 tolerated(0.39) benign(0.003) TCGA-18-3409-01 11 5322575 5322575 G A OR51B4 Missense_Mutation p.S201F 0.24 tolerated(0.43) benign(0.004) TCGA-18-3409-01 11 5345101 5345101 C T OR51B2 Missense_Mutation p.G143R 0.48 deleterious(0) probably_damaging(0.987) TCGA-18-3409-01 11 5373580 5373580 C T OR51B6 Silent p.F281F 0.15 TCGA-18-3409-01 11 5410988 5410988 C T OR51M1 Silent p.S120S 0.17 TCGA-18-3409-01 11 55065388 55065388 C T TRIM51HP RNA 0.23 TCGA-18-3409-01 11 5509997 5509997 C T OR52D1 Missense_Mutation p.P21S 0.15 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 11 55111342 55111342 C T OR4A16 Silent p.F222F 0.18 TCGA-18-3409-01 11 5528788 5528788 G A UBQLN3 3'UTR 0.39 TCGA-18-3409-01 11 5536149 5536149 G A UBQLNL 3'UTR 0.45 TCGA-18-3409-01 11 55433044 55433044 G C OR4C6 Missense_Mutation p.M134I 0.35 deleterious_low_confidence(0.01) benign(0.026) TCGA-18-3409-01 11 55541798 55541798 G A OR5D13 Silent p.R295R 0.13 TCGA-18-3409-01 11 55563748 55563748 C T OR5D14 Silent p.A239A 0.17 TCGA-18-3409-01 11 55594965 55594965 G A OR5L2 Missense_Mutation p.A91T 0.50 tolerated(1) benign(0.002) TCGA-18-3409-01 11 55653274 55653274 C T TRIM51 Missense_Mutation p.H124Y 0.21 deleterious(0) probably_damaging(1) TCGA-18-3409-01 11 55703698 55703698 G A OR5I1 Missense_Mutation p.P60L 0.28 deleterious(0) probably_damaging(0.997) TCGA-18-3409-01 11 55735698 55735698 C T OR10AG1 Missense_Mutation p.G81E 0.39 deleterious(0.04) benign(0.167) TCGA-18-3409-01 11 55735766 55735766 G A OR10AG1 Silent p.S58S 0.17 TCGA-18-3409-01 11 55798016 55798016 G A OR5AS1 Missense_Mutation p.G41E 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-18-3409-01 11 55861208 55861208 A G OR8I2 Missense_Mutation p.N142S 0.26 tolerated(0.47) benign(0.007) TCGA-18-3409-01 11 55861587 55861587 C T OR8I2 Silent p.T268T 0.11 TCGA-18-3409-01 11 55861617 55861617 G A OR8I2 Silent p.T278T 0.53 TCGA-18-3409-01 11 55872687 55872687 C T OR8H2 Missense_Mutation p.H57Y 0.19 deleterious(0.01) benign(0.167) TCGA-18-3409-01 11 55872882 55872882 C T OR8H2 Missense_Mutation p.R122C 0.22 deleterious(0.02) probably_damaging(0.988) TCGA-18-3409-01 11 55873182 55873182 C T OR8H2 Missense_Mutation p.L222F 0.17 tolerated(0.2) possibly_damaging(0.651) TCGA-18-3409-01 11 55904562 55904562 C T OR8J3 Missense_Mutation p.M211I 0.40 tolerated(0.09) benign(0.004) TCGA-18-3409-01 11 56000184 56000184 C T OR5T2 Missense_Mutation p.D160N 0.20 deleterious(0) probably_damaging(0.984) TCGA-18-3409-01 11 56020020 56020020 C T OR5T3 Silent p.F115F 0.41 TCGA-18-3409-01 11 56043953 56043953 C T OR5T1 Missense_Mutation p.S280L 0.36 tolerated(1) benign(0.002) TCGA-18-3409-01 11 56086200 56086200 G A OR8K3 Missense_Mutation p.V140I 0.29 tolerated_low_confidence(0.1) benign(0.087) TCGA-18-3409-01 11 56113718 56113718 C T OR8K1 Silent p.F68F 0.20 TCGA-18-3409-01 11 56114182 56114182 C T OR8K1 Missense_Mutation p.S223F 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.691) TCGA-18-3409-01 11 56127806 56127806 C T OR8J1 Silent p.F28F 0.16 TCGA-18-3409-01 11 56185293 56185293 C T OR5R1 Missense_Mutation p.R139K 0.21 tolerated(0.58) benign(0.006) TCGA-18-3409-01 11 56258004 56258004 G A OR5M8 Silent p.I281I 0.12 TCGA-18-3409-01 11 56258235 56258235 C T OR5M8 Nonsense_Mutation p.W204* 0.16 TCGA-18-3409-01 11 56309974 56309974 G A OR5M11 Missense_Mutation p.L254F 0.13 deleterious(0.01) probably_damaging(1) TCGA-18-3409-01 11 5632704 5632704 G A TRIM6 3'UTR 0.36 TCGA-18-3409-01 11 56380053 56380053 G A OR5M1 Missense_Mutation p.S309F 0.23 tolerated(0.71) benign(0) TCGA-18-3409-01 11 56380724 56380724 G A OR5M1 Silent p.F85F 0.35 TCGA-18-3409-01 11 56409132 56409132 G A OR5AP2 Missense_Mutation p.L262F 0.51 tolerated(0.1) probably_damaging(1) TCGA-18-3409-01 11 57004475 57004475 C T APLNR Missense_Mutation p.E2K 0.30 tolerated_low_confidence(0.06) probably_damaging(0.934) TCGA-18-3409-01 11 57087833 57087833 G T TNKS1BP1 Missense_Mutation p.R150S 0.22 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 11 57118326 57118326 G A P2RX3 Missense_Mutation p.D266N 0.13 deleterious(0) probably_damaging(1) TCGA-18-3409-01 11 5776770 5776770 G A OR52N4 Missense_Mutation p.G267E 0.22 deleterious(0) probably_damaging(0.992) TCGA-18-3409-01 11 57947718 57947718 G A OR9Q1 Missense_Mutation p.E268K 0.38 tolerated(0.06) benign(0.068) TCGA-18-3409-01 11 57958765 57958765 C T OR9Q2 Missense_Mutation p.S268F 0.14 tolerated(0.07) benign(0.072) TCGA-18-3409-01 11 58035306 58035306 G A OR10W1 Missense_Mutation p.P9S 0.39 tolerated(1) probably_damaging(1) TCGA-18-3409-01 11 58206868 58206868 C T OR5B12 Missense_Mutation p.G253R 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.529) TCGA-18-3409-01 11 5863044 5863044 C T OR52E6 Nonsense_Mutation p.W28* 0.36 TCGA-18-3409-01 11 58978323 58978323 G A MPEG1 Silent p.I672I 0.44 TCGA-18-3409-01 11 59132298 59132298 C T OR5AN1 Missense_Mutation p.R123C 0.42 deleterious(0) probably_damaging(0.983) TCGA-18-3409-01 11 59245164 59245164 G A OR4D10 Missense_Mutation p.E88K 0.44 tolerated(0.19) benign(0.001) TCGA-18-3409-01 11 59620404 59620404 C T TCN1 3'UTR 0.19 TCGA-18-3409-01 11 5968751 5968751 C T OR56A3 Silent p.L59L 0.52 TCGA-18-3409-01 11 60105331 60105331 G A MS4A6E Missense_Mutation p.E89K 0.12 tolerated(1) benign(0) TCGA-18-3409-01 11 60183468 60183468 C T MS4A14 Missense_Mutation p.H376Y 0.24 tolerated(0.22) benign(0.025) TCGA-18-3409-01 11 6048179 6048179 G A OR56A1 Silent p.F252F 0.41 TCGA-18-3409-01 11 60635145 60635145 C T ZP1 Silent p.L37L 0.33 TCGA-18-3409-01 11 61511223 61511223 C T DAGLA Silent p.S797S 0.19 TCGA-18-3409-01 11 61578274 61578274 G T FADS1 Missense_Mutation p.D288E 0.37 deleterious(0.01) probably_damaging(0.989) TCGA-18-3409-01 11 62292480 62292480 G A AHNAK Missense_Mutation p.P3137S 0.42 probably_damaging(0.999) TCGA-18-3409-01 11 62293705 62293705 G A AHNAK Silent p.S2728S 0.43 TCGA-18-3409-01 11 62295384 62295384 C T AHNAK Missense_Mutation p.G2169R 0.36 probably_damaging(0.986) TCGA-18-3409-01 11 6263073 6263073 C T CNGA4 Intron 0.15 TCGA-18-3409-01 11 6263074 6263074 C T CNGA4 Intron 0.15 TCGA-18-3409-01 11 6292184 6292184 G A CCKBR Intron 0.20 TCGA-18-3409-01 11 63676648 63676648 C T MARK2 Missense_Mutation p.S769L 0.27 deleterious(0.02) benign(0.269) TCGA-18-3409-01 11 63963138 63963138 C T STIP1 Silent p.I175I 0.25 TCGA-18-3409-01 11 64109193 64109193 G A CCDC88B Silent p.R218R 0.38 TCGA-18-3409-01 11 64121476 64121476 G A CCDC88B Silent p.K1311K 0.27 TCGA-18-3409-01 11 64129364 64129364 G A RPS6KA4 Missense_Mutation p.G266R 0.17 deleterious(0.01) possibly_damaging(0.519) TCGA-18-3409-01 11 64138829 64138829 G A RPS6KA4 Silent p.K732K 0.38 TCGA-18-3409-01 11 64390376 64390376 C T NRXN2 Missense_Mutation p.G1341E 0.27 deleterious(0) probably_damaging(0.98) TCGA-18-3409-01 11 64434783 64434783 G A NRXN2 Silent p.S579S 0.43 TCGA-18-3409-01 11 64436053 64436053 G A NRXN2 Silent p.I407I 0.38 TCGA-18-3409-01 11 6452588 6452588 G A HPX Silent p.G414G 0.36 TCGA-18-3409-01 11 64527235 64527235 C T PYGM Missense_Mutation p.V46M 0.14 tolerated(0.07) probably_damaging(0.994) TCGA-18-3409-01 11 6477540 6477540 G A TRIM3 Silent p.L472L 0.13 TCGA-18-3409-01 11 64800004 64800004 C T SNX15 Silent p.F79F 0.30 TCGA-18-3409-01 11 64822123 64822123 C T NAALADL1 Missense_Mutation p.E231K 0.35 deleterious(0.01) benign(0.045) TCGA-18-3409-01 11 64876349 64876349 C T VPS51 Missense_Mutation p.A469V 0.26 tolerated(0.17) possibly_damaging(0.719) TCGA-18-3409-01 11 65062097 65062097 C T POLA2 Silent p.F478F 0.31 TCGA-18-3409-01 11 65089097 65089097 C T CDC42EP2 3'UTR 0.27 TCGA-18-3409-01 11 65373256 65373256 G A MAP3K11 Missense_Mutation p.P603S 0.22 tolerated(0.09) benign(0.16) TCGA-18-3409-01 11 65421986 65421986 C T RELA Missense_Mutation p.A507T 0.58 deleterious_low_confidence(0.02) benign(0.08) TCGA-18-3409-01 11 65421987 65421987 C T RELA Silent p.G506G 0.55 TCGA-18-3409-01 11 65425808 65425808 G A RELA Missense_Mutation p.S276F 0.30 deleterious(0) probably_damaging(0.966) TCGA-18-3409-01 11 65480520 65480520 G A KAT5 Silent p.E125E 0.16 TCGA-18-3409-01 11 66192157 66192157 C T NPAS4 Missense_Mutation p.S599F 0.38 tolerated(0.44) benign(0.031) TCGA-18-3409-01 11 66260322 66260322 C T DPP3 Missense_Mutation p.S375F 0.14 deleterious(0) probably_damaging(0.982) TCGA-18-3409-01 11 66330597 66330597 G A CTSF 3'Flank 0.59 TCGA-18-3409-01 11 6649925 6649925 G A DCHS1 Silent p.P1766P 0.38 TCGA-18-3409-01 11 6651036 6651036 G A DCHS1 Silent p.V1634V 0.42 TCGA-18-3409-01 11 67191509 67191509 G A CARNS1 Missense_Mutation p.A764T 0.38 deleterious(0.01) probably_damaging(0.994) TCGA-18-3409-01 11 67220115 67220115 G A GPR152 Silent p.P27P 0.33 TCGA-18-3409-01 11 67287398 67287398 C T CABP2 Missense_Mutation p.G168E 0.27 deleterious(0.01) possibly_damaging(0.629) TCGA-18-3409-01 11 67353902 67353902 C T GSTP1 Missense_Mutation p.H163Y 0.29 tolerated(0.09) possibly_damaging(0.579) TCGA-18-3409-01 11 67789267 67789267 G A ALDH3B1 Silent p.Q291Q 0.19 TCGA-18-3409-01 11 67800726 67800726 C T NDUFS8 Silent p.L116L 0.40 TCGA-18-3409-01 11 67833299 67833299 G A CHKA Missense_Mutation p.P360L 0.34 deleterious(0) probably_damaging(0.968) TCGA-18-3409-01 11 67925262 67925262 G A SUV420H1 Missense_Mutation p.P851S 0.39 deleterious(0) probably_damaging(1) TCGA-18-3409-01 11 68115552 68115552 C T LRP5 Missense_Mutation p.P110L 0.44 deleterious(0) probably_damaging(0.984) TCGA-18-3409-01 11 68115652 68115652 G A LRP5 Silent p.K143K 0.39 TCGA-18-3409-01 11 688419 688419 G A DEAF1 Silent p.T143T 0.30 TCGA-18-3409-01 11 688420 688420 G A DEAF1 Missense_Mutation p.T143I 0.29 deleterious(0) benign(0.287) TCGA-18-3409-01 11 6891165 6891165 C T OR10A2 Silent p.F60F 0.19 TCGA-18-3409-01 11 69063187 69063187 G A MYEOV Silent p.V90V 0.19 TCGA-18-3409-01 11 69631136 69631136 G A FGF3 Silent p.F92F 0.34 TCGA-18-3409-01 11 70033894 70033894 C T ANO1 Silent p.I915I 0.27 TCGA-18-3409-01 11 70319386 70319386 G A SHANK2 Missense_Mutation p.S1714L 0.21 tolerated(0.52) benign(0.32) TCGA-18-3409-01 11 70333101 70333101 G A SHANK2 Silent p.S1100S 0.19 TCGA-18-3409-01 11 7064414 7064414 G A NLRP14 Missense_Mutation p.G386D 0.17 deleterious(0.01) probably_damaging(0.911) TCGA-18-3409-01 11 71502842 71502842 T A FAM86C1 Intron 0.31 TCGA-18-3409-01 11 72712089 72712089 G A FCHSD2 Silent p.F111F 0.38 TCGA-18-3409-01 11 73076728 73076728 G A ARHGEF17 Missense_Mutation p.D1911N 0.35 deleterious(0.03) possibly_damaging(0.889) TCGA-18-3409-01 11 75298965 75298965 C T MAP6 Silent p.K527K 0.10 TCGA-18-3409-01 11 75438599 75438599 G C MOGAT2 Silent p.S130S 0.41 TCGA-18-3409-01 11 75501768 75501768 C T DGAT2 Missense_Mutation p.P141S 0.34 deleterious(0) probably_damaging(1) TCGA-18-3409-01 11 76255758 76255758 C T C11orf30 Silent p.L1055L 0.29 TCGA-18-3409-01 11 76506861 76506861 C T TSKU Silent p.S67S 0.40 TCGA-18-3409-01 11 76867051 76867051 G A MYO7A Silent p.G128G 0.24 TCGA-18-3409-01 11 7716888 7716888 G A OVCH2 Silent p.L399L 0.50 TCGA-18-3409-01 11 78381519 78381519 C T TENM4 Silent p.T1957T 0.13 TCGA-18-3409-01 11 7984936 7984936 G A NLRP10 Missense_Mutation p.T36I 0.44 tolerated(0.05) possibly_damaging(0.816) TCGA-18-3409-01 11 85347169 85347169 A G TMEM126B Missense_Mutation p.M197V 0.20 deleterious(0.03) possibly_damaging(0.677) TCGA-18-3409-01 11 89424219 89424219 G A FOLH1B RNA 0.17 TCGA-18-3409-01 11 92087415 92087415 C T FAT3 Missense_Mutation p.L713F 0.36 benign(0.005) TCGA-18-3409-01 11 92088352 92088352 C T FAT3 Missense_Mutation p.S1025F 0.12 probably_damaging(0.974) TCGA-18-3409-01 11 92532092 92532092 G A FAT3 Missense_Mutation p.M1971I 0.20 benign(0.001) TCGA-18-3409-01 11 92533403 92533403 C T FAT3 Silent p.P2408P 0.48 TCGA-18-3409-01 11 92534585 92534585 C T FAT3 Silent p.I2802I 0.46 TCGA-18-3409-01 11 92600132 92600132 G A FAT3 Missense_Mutation p.V3962M 0.46 possibly_damaging(0.824) TCGA-18-3409-01 11 92616106 92616106 C T FAT3 Missense_Mutation p.L4162F 0.39 benign(0.361) TCGA-18-3409-01 11 92918976 92918976 C T SLC36A4 Missense_Mutation p.M20I 0.24 deleterious(0.03) benign(0.079) TCGA-18-3409-01 11 93148188 93148188 A T CCDC67 Missense_Mutation p.N516Y 0.32 tolerated(0.21) possibly_damaging(0.632) TCGA-18-3409-01 11 94730726 94730726 G A KDM4D Missense_Mutation p.D64N 0.13 deleterious(0.02) benign(0.028) TCGA-18-3409-01 11 94759478 94759478 G A KDM4E Missense_Mutation p.E253K 0.57 tolerated(1) benign(0.003) TCGA-18-3409-01 11 94862074 94862074 A G ENDOD1 Silent p.K278K 0.29 TCGA-18-3409-01 11 99690452 99690452 C T CNTN5 Missense_Mutation p.S78F 0.18 deleterious_low_confidence(0) benign(0.009) TCGA-18-3409-01 12 100042451 100042451 G A FAM71C Missense_Mutation p.E167K 0.65 deleterious(0.04) benign(0.445) TCGA-18-3409-01 12 100594592 100594592 G A ACTR6 5'UTR 0.13 TCGA-18-3409-01 12 100603946 100603946 C T ACTR6 Missense_Mutation p.P159S 0.22 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 12 100774480 100774480 A T SLC17A8 Nonsense_Mutation p.K35* 0.10 TCGA-18-3409-01 12 101018440 101018440 C T GAS2L3 Silent p.P619P 0.14 TCGA-18-3409-01 12 101603489 101603489 C T SLC5A8 Silent p.L46L 0.16 TCGA-18-3409-01 12 102038442 102038442 C T MYBPC1 Missense_Mutation p.A253V 0.11 deleterious(0.04) probably_damaging(0.992) TCGA-18-3409-01 12 10218158 10218158 C T CLEC9A Missense_Mutation p.S218F 0.43 tolerated(0.76) benign(0.015) TCGA-18-3409-01 12 102869442 102869442 C T IGF1 Missense_Mutation p.G67R 0.22 deleterious(0.03) probably_damaging(0.914) TCGA-18-3409-01 12 104063394 104063394 G A STAB2 Missense_Mutation p.G750R 0.40 deleterious(0.02) benign(0.307) TCGA-18-3409-01 12 10462062 10462062 G A KLRD1 Missense_Mutation p.G28E 0.33 deleterious(0) probably_damaging(0.988) TCGA-18-3409-01 12 108589506 108589506 C T WSCD2 5'UTR 0.21 TCGA-18-3409-01 12 108589759 108589759 G A WSCD2 Silent p.A50A 0.16 TCGA-18-3409-01 12 10862602 10862602 G A YBX3 Missense_Mutation p.R229C 0.24 deleterious(0.02) possibly_damaging(0.855) TCGA-18-3409-01 12 108642173 108642173 G A WSCD2 3'UTR 0.29 TCGA-18-3409-01 12 108985911 108985911 G A TMEM119 Silent p.F83F 0.24 TCGA-18-3409-01 12 109306389 109306389 C T SVOP Silent p.R458R 0.23 TCGA-18-3409-01 12 10959202 10959202 A G TAS2R8 Silent p.I126I 0.20 TCGA-18-3409-01 12 109677647 109677647 G A ACACB Missense_Mutation p.E1559K 0.58 deleterious(0.03) probably_damaging(0.998) TCGA-18-3409-01 12 109696794 109696794 G A ACACB Missense_Mutation p.G2126E 0.16 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 12 109724543 109724543 C T FOXN4 Silent p.L201L 0.52 TCGA-18-3409-01 12 111744784 111744784 G A CUX2 Silent p.K306K 0.40 TCGA-18-3409-01 12 111779756 111779756 C T CUX2 Silent p.A1186A 0.37 TCGA-18-3409-01 12 111785937 111785937 C T CUX2 Silent p.S1423S 0.16 TCGA-18-3409-01 12 112147356 112147356 C T ACAD10 Silent p.I186I 0.23 TCGA-18-3409-01 12 112184986 112184986 C T ACAD10 Missense_Mutation p.P828L 0.48 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 12 113355404 113355404 C T OAS1 Missense_Mutation p.P313S 0.20 tolerated(0.72) benign(0.067) TCGA-18-3409-01 12 113543661 113543661 G A RASAL1 Missense_Mutation p.P564L 0.44 tolerated(0.91) benign(0.005) TCGA-18-3409-01 12 11420362 11420362 C T PRB3 Missense_Mutation p.G232E 0.40 tolerated(0.32) unknown(0) TCGA-18-3409-01 12 11421019 11421019 C T PRB3 Missense_Mutation p.G55E 0.27 tolerated(0.13) unknown(0) TCGA-18-3409-01 12 11461601 11461601 C T PRB4 Missense_Mutation p.G106R 0.13 deleterious_low_confidence(0) unknown(0) TCGA-18-3409-01 12 11506298 11506298 C T PRB1 Missense_Mutation p.G114R 0.14 deleterious_low_confidence(0.03) unknown(0) TCGA-18-3409-01 12 11506313 11506313 C T PRB1 Missense_Mutation p.G109R 0.25 tolerated_low_confidence(0.24) unknown(0) TCGA-18-3409-01 12 115118751 115118751 C T TBX3 Nonsense_Mutation p.W197* 0.46 TCGA-18-3409-01 12 11548492 11548492 A G PRB2 5'UTR 0.16 TCGA-18-3409-01 12 117448145 117448145 G T FBXW8 Silent p.L419L 0.45 TCGA-18-3409-01 12 117448146 117448146 G A FBXW8 Missense_Mutation p.E420K 0.43 deleterious(0.01) possibly_damaging(0.842) TCGA-18-3409-01 12 117465849 117465849 C T FBXW8 Missense_Mutation p.R557C 0.32 tolerated(0.2) benign(0.004) TCGA-18-3409-01 12 119419693 119419693 G A SRRM4 Silent p.A2A 0.39 TCGA-18-3409-01 12 120288021 120288021 G A CIT Missense_Mutation p.P158L 0.48 deleterious(0.02) possibly_damaging(0.81) TCGA-18-3409-01 12 120597799 120597799 C T GCN1L1 Missense_Mutation p.G860E 0.20 benign(0.339) TCGA-18-3409-01 12 120616465 120616465 G A GCN1L1 Missense_Mutation p.T208M 0.47 benign(0.13) TCGA-18-3409-01 12 121098004 121098004 C T CABP1 Nonsense_Mutation p.R231* 0.11 TCGA-18-3409-01 12 121134306 121134306 C T MLEC Silent p.F279F 0.49 TCGA-18-3409-01 12 121154450 121154450 G A UNC119B Silent p.E126E 0.36 TCGA-18-3409-01 12 121154451 121154451 G A UNC119B Missense_Mutation p.E127K 0.38 tolerated(0.33) benign(0.093) TCGA-18-3409-01 12 121458280 121458280 C T OASL 3'UTR 0.36 TCGA-18-3409-01 12 121947413 121947413 G A KDM2B Missense_Mutation p.P535L 0.18 deleterious(0) probably_damaging(0.987) TCGA-18-3409-01 12 121986815 121986815 G A KDM2B Missense_Mutation p.A217V 0.35 tolerated(0.56) benign(0.034) TCGA-18-3409-01 12 122685097 122685097 G A LRRC43 Missense_Mutation p.V504M 0.16 tolerated(0.17) possibly_damaging(0.663) TCGA-18-3409-01 12 122685424 122685424 C T LRRC43 Silent p.T584T 0.35 TCGA-18-3409-01 12 122748207 122748207 G A VPS33A Missense_Mutation p.R70C 0.36 tolerated(0.17) benign(0.035) TCGA-18-3409-01 12 122967988 122967988 C T ZCCHC8 Intron 0.39 TCGA-18-3409-01 12 123641363 123641363 T C MPHOSPH9 Silent p.A1029A 0.50 TCGA-18-3409-01 12 124090657 124090657 C T DDX55 Missense_Mutation p.P66L 0.10 deleterious(0) probably_damaging(1) TCGA-18-3409-01 12 124212439 124212439 C T ATP6V0A2 Missense_Mutation p.L211F 0.21 deleterious(0.02) probably_damaging(0.961) TCGA-18-3409-01 12 124325914 124325914 G A DNAH10 Missense_Mutation p.G1610R 0.44 possibly_damaging(0.61) TCGA-18-3409-01 12 124341675 124341675 C T DNAH10 Missense_Mutation p.L2053F 0.11 probably_damaging(0.985) TCGA-18-3409-01 12 124497275 124497275 G A ZNF664 Missense_Mutation p.G195E 0.44 deleterious(0.01) probably_damaging(0.996) TCGA-18-3409-01 12 124497277 124497277 G A ZNF664 Missense_Mutation p.E196K 0.45 deleterious(0) probably_damaging(0.985) TCGA-18-3409-01 12 124798882 124798882 C T FAM101A Silent p.T73T 0.12 TCGA-18-3409-01 12 12483867 12483867 C A MANSC1 Missense_Mutation p.L130F 0.31 tolerated(0.21) benign(0.003) TCGA-18-3409-01 12 125292364 125292364 C T SCARB1 Missense_Mutation p.E318K 0.51 tolerated(0.24) benign(0.212) TCGA-18-3409-01 12 126138226 126138226 C T TMEM132B Missense_Mutation p.S736F 0.43 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 12 126139082 126139082 G A TMEM132B Silent p.R1021R 0.42 TCGA-18-3409-01 12 129558431 129558431 C T TMEM132D Missense_Mutation p.E1097K 0.46 deleterious(0) possibly_damaging(0.614) TCGA-18-3409-01 12 129558939 129558939 G A TMEM132D Silent p.F927F 0.40 TCGA-18-3409-01 12 130941081 130941081 G A RIMBP2 Silent p.F89F 0.41 TCGA-18-3409-01 12 131590383 131590383 C T GPR133 Silent p.L620L 0.48 TCGA-18-3409-01 12 132471210 132471210 C T EP400 Missense_Mutation p.A694V 0.16 unknown(0) TCGA-18-3409-01 12 133196311 133196311 C T P2RX2 Missense_Mutation p.S119F 0.58 tolerated(0.17) benign(0.008) TCGA-18-3409-01 12 133218806 133218806 G A POLE Silent p.D1710D 0.45 TCGA-18-3409-01 12 133435753 133435753 G A CHFR Missense_Mutation p.T283I 0.38 tolerated(0.1) benign(0.04) TCGA-18-3409-01 12 13720178 13720178 T C GRIN2B Silent p.E793E 0.20 TCGA-18-3409-01 12 14018920 14018920 C A GRIN2B Nonsense_Mutation p.E75* 0.43 TCGA-18-3409-01 12 15035064 15035064 C T MGP 3'UTR 0.53 TCGA-18-3409-01 12 15656871 15656871 G A PTPRO Missense_Mutation p.E379K 0.26 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-18-3409-01 12 16048369 16048369 C T STRAP Missense_Mutation p.P193S 0.39 tolerated(0.6) benign(0.012) TCGA-18-3409-01 12 1889730 1889730 C T ADIPOR2 Missense_Mutation p.L193F 0.30 deleterious(0) probably_damaging(0.972) TCGA-18-3409-01 12 2022270 2022270 C T CACNA2D4 Silent p.E115E 0.40 TCGA-18-3409-01 12 2062288 2062288 G A DCP1B Missense_Mutation p.S273F 0.31 deleterious(0.02) probably_damaging(0.95) TCGA-18-3409-01 12 20799438 20799438 C T PDE3A Missense_Mutation p.H756Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 12 20868132 20868132 C T SLCO1C1 Missense_Mutation p.R197C 0.27 deleterious(0) probably_damaging(0.993) TCGA-18-3409-01 12 20874867 20874867 C T SLCO1C1 Missense_Mutation p.S302F 0.09 deleterious(0) benign(0.195) TCGA-18-3409-01 12 20876032 20876032 C T SLCO1C1 Missense_Mutation p.P344S 0.14 deleterious(0.02) possibly_damaging(0.733) TCGA-18-3409-01 12 20885888 20885888 G A SLCO1C1 Missense_Mutation p.G411E 0.38 deleterious(0) probably_damaging(0.996) TCGA-18-3409-01 12 20905317 20905317 A C SLCO1C1 Missense_Mutation p.K699N 0.23 deleterious_low_confidence(0) possibly_damaging(0.788) TCGA-18-3409-01 12 21028281 21028281 G A SLCO1B3 Silent p.P280P 0.25 TCGA-18-3409-01 12 21054322 21054322 G A SLCO1B3 Missense_Mutation p.D596N 0.25 deleterious(0) probably_damaging(1) TCGA-18-3409-01 12 21453300 21453300 T A SLCO1A2 Nonsense_Mutation p.K298* 0.19 TCGA-18-3409-01 12 21457408 21457408 G A SLCO1A2 Missense_Mutation p.S181F 0.48 deleterious(0) probably_damaging(0.995) TCGA-18-3409-01 12 21715933 21715933 G A GYS2 Silent p.F327F 0.30 TCGA-18-3409-01 12 21954063 21954063 C T ABCC9 Missense_Mutation p.G1522E 0.28 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 12 22047070 22047070 C T ABCC9 Silent p.L566L 0.29 TCGA-18-3409-01 12 22078890 22078890 G T ABCC9 Missense_Mutation p.P131H 0.23 deleterious(0) probably_damaging(0.997) TCGA-18-3409-01 12 23893870 23893870 C T SOX5 Silent p.K224K 0.40 TCGA-18-3409-01 12 26868709 26868709 G A ITPR2 Silent p.S228S 0.19 TCGA-18-3409-01 12 2936347 2936347 C T NRIP2 3'UTR 0.21 TCGA-18-3409-01 12 31586027 31586027 G A DENND5B Intron 0.19 TCGA-18-3409-01 12 32134112 32134112 G T KIAA1551 Missense_Mutation p.V75F 0.35 tolerated(0.06) benign(0.032) TCGA-18-3409-01 12 34175405 34175405 C T ALG10 5'UTR 0.23 TCGA-18-3409-01 12 3647689 3647689 G A PRMT8 Intron 0.38 TCGA-18-3409-01 12 39124151 39124151 G A CPNE8 Silent p.F244F 0.52 TCGA-18-3409-01 12 40012821 40012821 C T ABCD2 Missense_Mutation p.M199I 0.11 deleterious(0.01) benign(0.439) TCGA-18-3409-01 12 40012996 40012996 C T ABCD2 Missense_Mutation p.R141Q 0.37 tolerated(0.2) benign(0.009) TCGA-18-3409-01 12 40154015 40154015 A T SLC2A13 Missense_Mutation p.L587H 0.42 deleterious(0) probably_damaging(0.95) TCGA-18-3409-01 12 41337879 41337879 T C CNTN1 Silent p.F530F 0.31 TCGA-18-3409-01 12 41414201 41414201 C T CNTN1 Missense_Mutation p.H828Y 0.14 tolerated(1) benign(0.045) TCGA-18-3409-01 12 41418956 41418956 G C CNTN1 Missense_Mutation p.R843P 0.48 deleterious(0) probably_damaging(0.997) TCGA-18-3409-01 12 41966734 41966734 G A PDZRN4 Missense_Mutation p.R718K 0.14 tolerated(0.22) benign(0.243) TCGA-18-3409-01 12 42854137 42854137 C T PRICKLE1 Missense_Mutation p.R657Q 0.18 tolerated(0.25) benign(0.134) TCGA-18-3409-01 12 43847772 43847772 A G ADAMTS20 Silent p.S566S 0.37 TCGA-18-3409-01 12 43858458 43858458 C T ADAMTS20 Missense_Mutation p.R482Q 0.16 tolerated(0.11) benign(0.002) TCGA-18-3409-01 12 45429899 45429899 T G DBX2 Splice_Site p.X135_splice 0.58 TCGA-18-3409-01 12 46211527 46211527 C T ARID2 Silent p.L165L 0.59 TCGA-18-3409-01 12 46245535 46245535 T C ARID2 Missense_Mutation p.V1210A 0.58 tolerated_low_confidence(0.1) benign(0.003) TCGA-18-3409-01 12 46246497 46246497 C T ARID2 Missense_Mutation p.P1531S 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-18-3409-01 12 48723693 48723693 G A H1FNT Missense_Mutation p.E207K 0.47 tolerated(0.13) possibly_damaging(0.486) TCGA-18-3409-01 12 48919789 48919789 C T OR8S1 Silent p.A125A 0.44 TCGA-18-3409-01 12 49166093 49166093 G A ADCY6 Silent p.F924F 0.52 TCGA-18-3409-01 12 49230001 49230001 G A DDX23 Missense_Mutation p.R429C 0.15 deleterious(0) probably_damaging(0.992) TCGA-18-3409-01 12 49308340 49308340 G A CCDC65 Missense_Mutation p.E152K 0.47 deleterious(0.01) possibly_damaging(0.875) TCGA-18-3409-01 12 49994501 49994501 G A FAM186B Missense_Mutation p.L308F 0.51 deleterious(0.01) probably_damaging(0.951) TCGA-18-3409-01 12 50187175 50187175 C T NCKAP5L Silent p.E1100E 0.48 TCGA-18-3409-01 12 50191039 50191039 G A NCKAP5L Missense_Mutation p.P202S 0.38 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 12 50191040 50191040 G A NCKAP5L Silent p.D201D 0.36 TCGA-18-3409-01 12 5021808 5021808 G A KCNA1 Missense_Mutation p.E422K 0.27 deleterious(0.05) benign(0.41) TCGA-18-3409-01 12 51069214 51069214 C T DIP2B Missense_Mutation p.S300F 0.19 tolerated(0.62) benign(0) TCGA-18-3409-01 12 5153901 5153901 C T KCNA5 Silent p.F196F 0.30 TCGA-18-3409-01 12 51891065 51891065 G A SLC4A8 Intron 0.40 TCGA-18-3409-01 12 52377884 52377884 A T ACVR1B Missense_Mutation p.I346F 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-18-3409-01 12 52713029 52713029 C T KRT83 Silent p.R168R 0.14 TCGA-18-3409-01 12 52713030 52713030 C T KRT83 Missense_Mutation p.R168Q 0.15 tolerated(0.05) probably_damaging(0.943) TCGA-18-3409-01 12 52862815 52862815 G A KRT6C 3'UTR 0.18 TCGA-18-3409-01 12 52913697 52913697 A G KRT5 Silent p.G128G 0.22 TCGA-18-3409-01 12 52942523 52942523 C T KRT71 Missense_Mutation p.D259N 0.19 tolerated(0.33) benign(0.12) TCGA-18-3409-01 12 52960601 52960601 T C KRT74 3'UTR 0.61 TCGA-18-3409-01 12 53008396 53008396 T A KRT73 Silent p.G262G 0.17 TCGA-18-3409-01 12 53008398 53008398 C T KRT73 Missense_Mutation p.G262R 0.16 tolerated(0.06) benign(0.003) TCGA-18-3409-01 12 53170489 53170489 G A KRT76 Missense_Mutation p.S196F 0.49 deleterious(0) probably_damaging(0.992) TCGA-18-3409-01 12 53207610 53207610 C T KRT4 Missense_Mutation p.G78E 0.39 deleterious(0.01) possibly_damaging(0.871) TCGA-18-3409-01 12 53227802 53227802 C T KRT79 Silent p.L81L 0.65 TCGA-18-3409-01 12 53232821 53232821 G A KRT78 3'UTR 0.50 TCGA-18-3409-01 12 53345606 53345606 C T KRT18 Missense_Mutation p.S305F 0.13 deleterious(0.04) benign(0.236) TCGA-18-3409-01 12 53677227 53677227 G A ESPL1 Silent p.L994L 0.41 TCGA-18-3409-01 12 53682974 53682974 C T ESPL1 Silent p.F1603F 0.40 TCGA-18-3409-01 12 53687309 53687309 C T ESPL1 3'UTR 0.21 TCGA-18-3409-01 12 53722687 53722687 C T SP7 Missense_Mutation p.G180E 0.27 deleterious(0.02) benign(0.175) TCGA-18-3409-01 12 53817686 53817686 C T AMHR2 5'UTR 0.40 TCGA-18-3409-01 12 53879205 53879205 C T MAP3K12 Silent p.K292K 0.38 TCGA-18-3409-01 12 53879942 53879942 G A MAP3K12 Missense_Mutation p.P240L 0.28 deleterious(0.02) benign(0.064) TCGA-18-3409-01 12 54756399 54756399 G A GPR84 3'UTR 0.44 TCGA-18-3409-01 12 54929930 54929930 G A NCKAP1L Missense_Mutation p.E992K 0.51 deleterious(0.01) possibly_damaging(0.705) TCGA-18-3409-01 12 54971076 54971076 C G PDE1B Silent p.A525A 0.45 TCGA-18-3409-01 12 55420286 55420286 G A NEUROD4 Missense_Mutation p.M21I 0.47 tolerated(0.25) benign(0) TCGA-18-3409-01 12 55615268 55615268 C T OR10A7 Missense_Mutation p.P154S 0.46 deleterious(0.04) possibly_damaging(0.677) TCGA-18-3409-01 12 55641500 55641500 C T OR6C74 Silent p.V143V 0.55 TCGA-18-3409-01 12 55714785 55714785 G A OR6C1 Missense_Mutation p.M134I 0.41 deleterious_low_confidence(0.03) benign(0.031) TCGA-18-3409-01 12 55715295 55715295 G A OR6C1 Silent p.R304R 0.37 TCGA-18-3409-01 12 55846129 55846129 C T OR6C2 Silent p.I44I 0.41 TCGA-18-3409-01 12 55846263 55846263 C T OR6C2 Missense_Mutation p.T89I 0.09 tolerated_low_confidence(0.08) benign(0.027) TCGA-18-3409-01 12 55863430 55863430 C T OR6C70 Missense_Mutation p.D165N 0.18 deleterious_low_confidence(0.03) benign(0.168) TCGA-18-3409-01 12 55945068 55945068 G A OR6C4 Missense_Mutation p.E20K 0.46 tolerated_low_confidence(0.34) benign(0.073) TCGA-18-3409-01 12 5603968 5603968 G A NTF3 Silent p.K209K 0.32 TCGA-18-3409-01 12 56118299 56118299 C T RDH5 Silent p.V309V 0.33 TCGA-18-3409-01 12 56346688 56346688 C T DGKA Silent p.D638D 0.20 TCGA-18-3409-01 12 56435852 56435852 C T RPS26 5'UTR 0.20 TCGA-18-3409-01 12 56742562 56742563 - T STAT2 Frame_Shift_Ins p.L535Ifs*6 0.31 TCGA-18-3409-01 12 56755840 56755840 G A APOF Silent p.P50P 0.11 TCGA-18-3409-01 12 56755841 56755841 G A APOF Missense_Mutation p.P50L 0.11 tolerated(0.05) benign(0.086) TCGA-18-3409-01 12 5687656 5687656 G A ANO2 Silent p.F754F 0.42 TCGA-18-3409-01 12 57000518 57000518 C T BAZ2A Splice_Site p.X700_splice 0.50 TCGA-18-3409-01 12 57111742 57111742 G A NACA Intron 0.39 TCGA-18-3409-01 12 57112302 57112302 G A NACA Intron 0.33 TCGA-18-3409-01 12 57390244 57390244 G A GPR182 3'UTR 0.17 TCGA-18-3409-01 12 57423021 57423021 C T MYO1A Missense_Mutation p.G967E 0.50 deleterious(0) probably_damaging(1) TCGA-18-3409-01 12 57440417 57440417 G A MYO1A Nonsense_Mutation p.R187* 0.47 TCGA-18-3409-01 12 57588348 57588348 C T LRP1 Intron 0.50 TCGA-18-3409-01 12 57638117 57638117 G A STAC3 Missense_Mutation p.S280F 0.52 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 12 57873026 57873026 C T ARHGAP9 Missense_Mutation p.R55Q 0.16 tolerated(0.15) benign(0.053) TCGA-18-3409-01 12 57961299 57961299 G A KIF5A Silent p.R204R 0.10 TCGA-18-3409-01 12 58007382 58007382 T C ARHGEF25 Intron 0.11 TCGA-18-3409-01 12 58010570 58010570 C T ARHGEF25 Missense_Mutation p.L585F 0.41 tolerated_low_confidence(0.11) benign(0.005) TCGA-18-3409-01 12 58112049 58112049 G A OS9 Missense_Mutation p.E419K 0.10 tolerated(0.11) benign(0.01) TCGA-18-3409-01 12 58125160 58125160 G A AGAP2 Missense_Mutation p.P712S 0.35 tolerated(0.25) probably_damaging(0.998) TCGA-18-3409-01 12 59274433 59274433 C A LRIG3 Silent p.G577G 0.12 TCGA-18-3409-01 12 60168610 60168610 C T SLC16A7 Silent p.F178F 0.36 TCGA-18-3409-01 12 6094223 6094223 C T VWF Missense_Mutation p.E2322K 0.25 deleterious(0.02) possibly_damaging(0.881) TCGA-18-3409-01 12 6101092 6101092 G A VWF Missense_Mutation p.P2231S 0.50 deleterious(0.04) probably_damaging(0.96) TCGA-18-3409-01 12 6125939 6125939 G A VWF Silent p.F1717F 0.24 TCGA-18-3409-01 12 6204461 6204461 C T VWF Intron 0.54 TCGA-18-3409-01 12 62104055 62104055 C T FAM19A2 3'UTR 0.52 TCGA-18-3409-01 12 64377732 64377732 C T SRGAP1 Nonsense_Mutation p.R25* 0.19 TCGA-18-3409-01 12 64814175 64814175 A T XPOT Silent p.L239L 0.29 TCGA-18-3409-01 12 64814176 64814176 C T XPOT Missense_Mutation p.R240W 0.29 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 12 6483928 6483928 C T SCNN1A Missense_Mutation p.E67K 0.30 tolerated_low_confidence(0.53) benign(0.053) TCGA-18-3409-01 12 65110491 65110491 G A GNS 3'UTR 0.14 TCGA-18-3409-01 12 6650684 6650684 C T IFFO1 Missense_Mutation p.G527E 0.21 tolerated(0.43) probably_damaging(0.989) TCGA-18-3409-01 12 66700216 66700216 A G HELB Missense_Mutation p.I233M 0.11 tolerated(0.17) benign(0.338) TCGA-18-3409-01 12 66771034 66771034 C T GRIP1 Missense_Mutation p.E833K 0.42 tolerated(0.08) benign(0.034) TCGA-18-3409-01 12 68646567 68646567 C T IL22 Missense_Mutation p.E77K 0.44 tolerated(0.51) benign(0.001) TCGA-18-3409-01 12 6969353 6969353 C T USP5 Missense_Mutation p.S390F 0.27 deleterious(0) probably_damaging(1) TCGA-18-3409-01 12 7048042 7048042 C T ATN1 Silent p.P972P 0.55 TCGA-18-3409-01 12 7048043 7048043 C T ATN1 Nonsense_Mutation p.R973* 0.60 TCGA-18-3409-01 12 70946555 70946555 A G PTPRB Splice_Site p.X1796_splice 0.48 TCGA-18-3409-01 12 70954712 70954712 G A PTPRB Missense_Mutation p.P1391S 0.16 deleterious(0) probably_damaging(0.954) TCGA-18-3409-01 12 70981045 70981045 G A PTPRB Missense_Mutation p.P685S 0.18 deleterious(0) probably_damaging(0.94) TCGA-18-3409-01 12 71095095 71095095 G A PTPRR Missense_Mutation p.S339F 0.14 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 12 71148030 71148030 C T PTPRR Missense_Mutation p.G227R 0.38 deleterious(0) probably_damaging(0.994) TCGA-18-3409-01 12 71551479 71551479 C T TSPAN8 5'UTR 0.44 TCGA-18-3409-01 12 7171671 7171671 C T C1S Silent p.L164L 0.23 TCGA-18-3409-01 12 71977894 71977894 G A LGR5 Missense_Mutation p.G702S 0.15 tolerated(1) benign(0.021) TCGA-18-3409-01 12 72070878 72070878 C T THAP2 Missense_Mutation p.T226I 0.21 deleterious_low_confidence(0) possibly_damaging(0.86) TCGA-18-3409-01 12 72070879 72070879 C T THAP2 Silent p.T226T 0.21 TCGA-18-3409-01 12 72771779 72771779 G A TRHDE Missense_Mutation p.R353Q 0.11 deleterious(0.02) probably_damaging(0.99) TCGA-18-3409-01 12 7281010 7281010 G A RBP5 Silent p.I26I 0.20 TCGA-18-3409-01 12 73056884 73056884 G A TRHDE Missense_Mutation p.R995Q 0.29 tolerated(0.91) benign(0.299) TCGA-18-3409-01 12 7475830 7475830 G A ACSM4 Missense_Mutation p.G376R 0.37 tolerated(0.07) probably_damaging(0.996) TCGA-18-3409-01 12 75436108 75436108 G A KCNC2 3'UTR 0.10 TCGA-18-3409-01 12 7559321 7559321 G A CD163L1 Silent p.V298V 0.39 TCGA-18-3409-01 12 76763451 76763451 G A OSBPL8 Missense_Mutation p.P736S 0.13 tolerated(0.28) benign(0.016) TCGA-18-3409-01 12 7868817 7868817 G A DPPA3 Silent p.K117K 0.43 TCGA-18-3409-01 12 7947788 7947788 G A NANOG 3'UTR 0.23 TCGA-18-3409-01 12 7947789 7947789 A T NANOG 3'UTR 0.17 TCGA-18-3409-01 12 7984256 7984256 G A SLC2A14 Silent p.S95S 0.38 TCGA-18-3409-01 12 80655764 80655764 G A OTOGL Missense_Mutation p.M626I 0.19 deleterious(0.02) possibly_damaging(0.859) TCGA-18-3409-01 12 80722484 80722484 C T OTOGL Silent p.I1404I 0.17 TCGA-18-3409-01 12 8074150 8074150 G A SLC2A3 Silent p.V450V 0.18 TCGA-18-3409-01 12 80746106 80746106 G A OTOGL Nonsense_Mutation p.W1757* 0.52 TCGA-18-3409-01 12 81111227 81111227 C T MYF5 Missense_Mutation p.R129C 0.45 deleterious(0.02) probably_damaging(0.939) TCGA-18-3409-01 12 81528754 81528754 G A ACSS3 Missense_Mutation p.E206K 0.42 deleterious(0) probably_damaging(1) TCGA-18-3409-01 12 81741342 81741342 C T PPFIA2 Silent p.R734R 0.12 TCGA-18-3409-01 12 81741515 81741515 G A PPFIA2 Missense_Mutation p.R677C 0.49 deleterious(0) probably_damaging(0.992) TCGA-18-3409-01 12 85695207 85695207 G A ALX1 Missense_Mutation p.R312Q 0.46 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 12 8673754 8673754 G A CLEC4D Missense_Mutation p.G179R 0.53 tolerated(0.36) benign(0.009) TCGA-18-3409-01 12 88512511 88512511 G A CEP290 Missense_Mutation p.P511L 0.49 benign(0.353) TCGA-18-3409-01 12 9304839 9304839 G A PZP Missense_Mutation p.P1397S 0.22 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 12 93100563 93100563 G A C12orf74 Silent p.R52R 0.56 TCGA-18-3409-01 12 93147976 93147976 G A PLEKHG7 Silent p.R142R 0.41 TCGA-18-3409-01 12 97102582 97102582 G A C12orf55 Splice_Site p.X2242_splice 0.14 TCGA-18-3409-01 12 99446974 99446974 C T ANKS1B Missense_Mutation p.M913I 0.47 tolerated(0.84) benign(0.004) TCGA-18-3409-01 13 100515265 100515265 C T CLYBL Silent p.F153F 0.14 TCGA-18-3409-01 13 103718645 103718645 C T SLC10A2 5'UTR 0.15 TCGA-18-3409-01 13 107823060 107823060 G A FAM155A Missense_Mutation p.P388S 0.14 tolerated(0.27) benign(0.116) TCGA-18-3409-01 13 108862306 108862306 G A LIG4 Silent p.I437I 0.25 TCGA-18-3409-01 13 109672195 109672195 G A MYO16 Missense_Mutation p.G889E 0.42 deleterious(0) probably_damaging(1) TCGA-18-3409-01 13 109779788 109779788 C A MYO16 Missense_Mutation p.P1292Q 0.25 deleterious(0) probably_damaging(1) TCGA-18-3409-01 13 110826824 110826824 C T COL4A1 Silent p.L1125L 0.41 TCGA-18-3409-01 13 113212713 113212713 A G TUBGCP3 Silent p.A115A 0.19 TCGA-18-3409-01 13 113514664 113514664 C T ATP11A Silent p.L931L 0.18 TCGA-18-3409-01 13 113536372 113536372 C T ATP11A 3'UTR 0.21 TCGA-18-3409-01 13 113678955 113678955 C T MCF2L Intron 0.49 TCGA-18-3409-01 13 113777207 113777207 C T F10 Missense_Mutation p.S13F 0.29 tolerated(0.78) benign(0) TCGA-18-3409-01 13 113832535 113832535 G A PCID2 Missense_Mutation p.P447S 0.18 deleterious(0) probably_damaging(1) TCGA-18-3409-01 13 114138238 114138238 T C DCUN1D2 Missense_Mutation p.Q46R 0.28 deleterious(0.04) benign(0.004) TCGA-18-3409-01 13 114817534 114817534 G A RASA3 Silent p.S90S 0.18 TCGA-18-3409-01 13 19999111 19999111 T C TPTE2 Missense_Mutation p.N481S 0.25 deleterious(0.01) possibly_damaging(0.567) TCGA-18-3409-01 13 21362645 21362645 G A XPO4 Silent p.S1009S 0.38 TCGA-18-3409-01 13 21362646 21362646 G A XPO4 Missense_Mutation p.S1009F 0.36 deleterious(0) probably_damaging(0.997) TCGA-18-3409-01 13 21417152 21417152 A C XPO4 Silent p.V203V 0.33 TCGA-18-3409-01 13 21442736 21442736 C T XPO4 Silent p.L58L 0.14 TCGA-18-3409-01 13 21562372 21562372 G A LATS2 Missense_Mutation p.P516L 0.31 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 13 21563271 21563271 G A LATS2 Silent p.F216F 0.23 TCGA-18-3409-01 13 21751173 21751173 G A MRP63 Missense_Mutation p.E40K 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-18-3409-01 13 23928927 23928927 C T SACS Silent p.V608V 0.22 TCGA-18-3409-01 13 24167481 24167481 C T TNFRSF19 Intron 0.27 TCGA-18-3409-01 13 25284959 25284959 C A ATP12A Nonsense_Mutation p.S982* 0.39 TCGA-18-3409-01 13 25670880 25670880 G A PABPC3 Missense_Mutation p.E182K 0.29 tolerated(0.26) benign(0.43) TCGA-18-3409-01 13 25671266 25671266 C T PABPC3 Silent p.L310L 0.31 TCGA-18-3409-01 13 25671267 25671267 C T PABPC3 Missense_Mutation p.R311W 0.32 deleterious(0.01) possibly_damaging(0.847) TCGA-18-3409-01 13 25914172 25914172 C T NUPL1 Missense_Mutation p.T567I 0.22 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 13 27333080 27333080 G A GPR12 Silent p.I295I 0.21 TCGA-18-3409-01 13 27847344 27847344 A - RASL11A Frame_Shift_Del p.K148Rfs*18 0.15 TCGA-18-3409-01 13 28519554 28519554 C T ATP5EP2 3'UTR 0.23 TCGA-18-3409-01 13 28588655 28588655 C T FLT3 Silent p.R931R 0.20 TCGA-18-3409-01 13 29599057 29599057 C T MTUS2 Silent p.F84F 0.32 TCGA-18-3409-01 13 29599436 29599436 G A MTUS2 Missense_Mutation p.D211N 0.13 deleterious(0.03) benign(0.005) TCGA-18-3409-01 13 29600876 29600876 G A MTUS2 Missense_Mutation p.E691K 0.16 deleterious(0.04) possibly_damaging(0.902) TCGA-18-3409-01 13 31233097 31233097 C T USPL1 Silent p.S961S 0.38 TCGA-18-3409-01 13 32352681 32352681 C T RXFP2 Missense_Mutation p.P249L 0.24 deleterious(0) possibly_damaging(0.735) TCGA-18-3409-01 13 32376587 32376587 G A RXFP2 3'UTR 0.36 TCGA-18-3409-01 13 32818196 32818196 C T FRY Silent p.L2235L 0.32 TCGA-18-3409-01 13 32818197 32818197 C T FRY Missense_Mutation p.P2236S 0.28 tolerated(0.45) benign(0.264) TCGA-18-3409-01 13 32841364 32841364 C T FRY Silent p.I2668I 0.32 TCGA-18-3409-01 13 32915094 32915094 C T BRCA2 Missense_Mutation p.S2201F 0.38 deleterious(0.01) possibly_damaging(0.861) TCGA-18-3409-01 13 36158054 36158054 C T NBEA Missense_Mutation p.P2352L 0.43 deleterious(0) probably_damaging(0.989) TCGA-18-3409-01 13 36158055 36158055 C T NBEA Silent p.P2352P 0.43 TCGA-18-3409-01 13 36699922 36699922 G A DCLK1 Missense_Mutation p.S118F 0.24 deleterious(0.01) unknown(0) TCGA-18-3409-01 13 37679192 37679192 G A CSNK1A1L Nonsense_Mutation p.Q68* 0.34 TCGA-18-3409-01 13 38211570 38211570 G A TRPC4 Silent p.L807L 0.40 TCGA-18-3409-01 13 43987109 43987109 C T ENOX1 5'UTR 0.33 TCGA-18-3409-01 13 45768509 45768509 C T KCTD4 Missense_Mutation p.G65E 0.12 deleterious(0.04) benign(0.23) TCGA-18-3409-01 13 46287426 46287426 C T SPERT Missense_Mutation p.S89F 0.42 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-18-3409-01 13 46288346 46288346 G A SPERT Missense_Mutation p.E396K 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-18-3409-01 13 46543999 46543999 G A ZC3H13 Missense_Mutation p.R894C 0.32 unknown(0) TCGA-18-3409-01 13 46638865 46638865 C T CPB2 Nonsense_Mutation p.W238* 0.34 TCGA-18-3409-01 13 46638866 46638866 C T CPB2 Nonsense_Mutation p.W238* 0.34 TCGA-18-3409-01 13 46708349 46708349 G A LCP1 Silent p.G513G 0.27 TCGA-18-3409-01 13 49281181 49281181 C T CYSLTR2 Silent p.F76F 0.21 TCGA-18-3409-01 13 49842022 49842022 T G CDADC1 Missense_Mutation p.M276R 0.25 deleterious(0) probably_damaging(0.993) TCGA-18-3409-01 13 51952577 51952577 G A INTS6 Missense_Mutation p.S467F 0.34 tolerated(0.73) benign(0.163) TCGA-18-3409-01 13 52325496 52325496 C T WDFY2 Missense_Mutation p.S259F 0.21 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 13 52440034 52440034 G A CCDC70 Missense_Mutation p.E174K 0.33 tolerated(0.1) benign(0.112) TCGA-18-3409-01 13 52548333 52548333 G T ATP7B Silent p.S341S 0.33 TCGA-18-3409-01 13 52548915 52548915 G A ATP7B Silent p.L147L 0.53 TCGA-18-3409-01 13 52604646 52604646 C T UTP14C Missense_Mutation p.S569F 0.26 tolerated(0.08) benign(0.076) TCGA-18-3409-01 13 52952155 52952155 G A THSD1 Silent p.F650F 0.24 TCGA-18-3409-01 13 52971669 52971669 A G THSD1 Missense_Mutation p.F240S 0.32 deleterious(0) probably_damaging(0.99) TCGA-18-3409-01 13 53049290 53049290 C T CKAP2 3'UTR 0.19 TCGA-18-3409-01 13 53282789 53282789 G A LECT1 Missense_Mutation p.T224I 0.38 tolerated(0.18) benign(0.154) TCGA-18-3409-01 13 61041372 61041372 C T TDRD3 Silent p.S118S 0.34 TCGA-18-3409-01 13 61041373 61041373 C T TDRD3 Silent p.L119L 0.34 TCGA-18-3409-01 13 64321022 64321022 C T AL445989.1 Missense_Mutation p.S30F 0.14 unknown(0) TCGA-18-3409-01 13 67801516 67801516 C T PCDH9 Missense_Mutation p.D353N 0.30 deleterious(0) probably_damaging(1) TCGA-18-3409-01 13 67802142 67802142 G A PCDH9 Missense_Mutation p.S144F 0.30 deleterious(0.02) probably_damaging(0.961) TCGA-18-3409-01 13 72014766 72014766 G A DACH1 3'UTR 0.28 TCGA-18-3409-01 13 72053449 72053449 C T DACH1 Splice_Site p.X577_splice 0.14 TCGA-18-3409-01 13 73357624 73357624 C T PIBF1 Missense_Mutation p.S6L 0.36 tolerated_low_confidence(0.08) benign(0.02) TCGA-18-3409-01 13 73428285 73428285 C T PIBF1 Silent p.L438L 0.17 TCGA-18-3409-01 13 75876395 75876395 C T TBC1D4 Silent p.A965A 0.24 TCGA-18-3409-01 13 75886895 75886895 G A TBC1D4 Missense_Mutation p.P788S 0.39 tolerated(0.41) benign(0.02) TCGA-18-3409-01 13 88328487 88328487 G A SLITRK5 Missense_Mutation p.E282K 0.30 tolerated(0.1) possibly_damaging(0.677) TCGA-18-3409-01 13 88328520 88328520 G A SLITRK5 Missense_Mutation p.E293K 0.39 deleterious(0.05) benign(0.156) TCGA-18-3409-01 13 92345891 92345891 C T GPC5 Missense_Mutation p.P259L 0.43 deleterious(0) probably_damaging(0.971) TCGA-18-3409-01 13 95121299 95121299 C T DCT Missense_Mutation p.G99E 0.30 tolerated(0.05) benign(0.259) TCGA-18-3409-01 13 96230168 96230168 G A CLDN10 Missense_Mutation p.G196E 0.41 deleterious(0.03) benign(0.382) TCGA-18-3409-01 13 96555192 96555192 C A UGGT2 Missense_Mutation p.L806F 0.38 tolerated(0.08) probably_damaging(0.972) TCGA-18-3409-01 13 99037085 99037085 C T FARP1 Missense_Mutation p.H200Y 0.29 deleterious(0) probably_damaging(1) TCGA-18-3409-01 14 100129338 100129338 C T HHIPL1 Missense_Mutation p.S543F 0.09 deleterious(0) probably_damaging(1) TCGA-18-3409-01 14 100604196 100604196 C T EVL Intron 0.71 TCGA-18-3409-01 14 101493169 101493169 G A MIR329-1 RNA 0.12 TCGA-18-3409-01 14 102372829 102372829 C T PPP2R5C Missense_Mutation p.P403S 0.10 tolerated(0.1) benign(0.377) TCGA-18-3409-01 14 102442056 102442056 C T DYNC1H1 Silent p.V88V 0.48 TCGA-18-3409-01 14 102476637 102476637 C T DYNC1H1 Silent p.S2082S 0.45 TCGA-18-3409-01 14 102505342 102505342 A T DYNC1H1 Missense_Mutation p.E3737D 0.51 probably_damaging(0.951) TCGA-18-3409-01 14 102931580 102931580 C T TECPR2 Missense_Mutation p.P1248L 0.35 deleterious(0.01) benign(0.158) TCGA-18-3409-01 14 104206338 104206338 G A PPP1R13B Silent p.I805I 0.43 TCGA-18-3409-01 14 105259020 105259020 G A AKT1 5'UTR 0.52 TCGA-18-3409-01 14 105405869 105405869 G A AHNAK2 Missense_Mutation p.P5307S 0.56 possibly_damaging(0.806) TCGA-18-3409-01 14 105405870 105405870 G A AHNAK2 Silent p.L5306L 0.53 TCGA-18-3409-01 14 105408689 105408689 G A AHNAK2 Missense_Mutation p.P4367S 0.53 probably_damaging(0.982) TCGA-18-3409-01 14 105411071 105411071 C T AHNAK2 Missense_Mutation p.G3573S 0.15 probably_damaging(0.931) TCGA-18-3409-01 14 105412215 105412215 G A AHNAK2 Silent p.I3191I 0.60 TCGA-18-3409-01 14 105416597 105416597 G A AHNAK2 Missense_Mutation p.L1731F 0.55 possibly_damaging(0.726) TCGA-18-3409-01 14 105420408 105420408 G A AHNAK2 Silent p.I460I 0.46 TCGA-18-3409-01 14 106091377 106091377 C T IGHG4 Missense_Mutation p.E173K 0.08 tolerated(0.1) benign(0.041) TCGA-18-3409-01 14 106321812 106321812 G A IGHM Missense_Mutation p.P141L 0.50 deleterious(0) probably_damaging(0.933) TCGA-18-3409-01 14 106406009 106406009 C T IGHV6-1 Nonsense_Mutation p.W16* 0.48 TCGA-18-3409-01 14 106586560 106586560 G A IGHV3-13 Missense_Mutation p.L10F 0.14 tolerated_low_confidence(0.06) benign(0.213) TCGA-18-3409-01 14 106641581 106641581 G A IGHV1-18 Silent p.A111A 0.53 TCGA-18-3409-01 14 106725383 106725383 G A IGHV3-23 Missense_Mutation p.R57C 0.25 deleterious_low_confidence(0.03) benign(0.231) TCGA-18-3409-01 14 106805452 106805452 C G IGHV4-31 Silent p.L37L 0.07 TCGA-18-3409-01 14 107282958 107282958 T C IGHV7-81 Missense_Mutation p.Q62R 0.12 tolerated(0.09) benign(0.253) TCGA-18-3409-01 14 19378016 19378016 C T OR11H12 Silent p.I141I 0.25 TCGA-18-3409-01 14 20216115 20216115 A T OR4Q3 Missense_Mutation p.N177Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 14 20389490 20389490 C T OR4K5 Missense_Mutation p.S242F 0.14 deleterious(0) possibly_damaging(0.609) TCGA-18-3409-01 14 20483071 20483071 G A OR4K14 Silent p.S94S 0.49 TCGA-18-3409-01 14 20612188 20612188 C T OR4N5 Silent p.I98I 0.11 TCGA-18-3409-01 14 20864797 20864797 G A TEP1 Nonsense_Mutation p.Q548* 0.12 TCGA-18-3409-01 14 20916906 20916906 G A OSGEP Silent p.L208L 0.17 TCGA-18-3409-01 14 21109437 21109437 C T OR6S1 Missense_Mutation p.M138I 0.44 deleterious(0.01) probably_damaging(0.942) TCGA-18-3409-01 14 21502423 21502423 G A RNASE13 Missense_Mutation p.L9F 0.38 deleterious(0.03) benign(0.066) TCGA-18-3409-01 14 21623338 21623338 G A OR5AU1 Nonsense_Mutation p.Q283* 0.57 TCGA-18-3409-01 14 21831642 21831642 G A SUPT16H Silent p.L418L 0.32 TCGA-18-3409-01 14 21881137 21881137 G A CHD8 Missense_Mutation p.P721S 0.58 deleterious(0) probably_damaging(0.996) TCGA-18-3409-01 14 22192091 22192091 G A TRAV3 5'UTR 0.56 TCGA-18-3409-01 14 22265555 22265555 C T TRAV8-1 5'UTR 0.53 TCGA-18-3409-01 14 22433711 22433711 C T TRAV12-3 5'UTR 0.44 TCGA-18-3409-01 14 22465895 22465895 G A TRAV17 5'UTR 0.26 TCGA-18-3409-01 14 22671124 22671124 C T TRAV26-2 Silent p.Y63Y 0.21 TCGA-18-3409-01 14 22690104 22690104 G A TRAV35 Silent p.Q21Q 0.17 TCGA-18-3409-01 14 22931973 22931973 A T TRDC Silent p.T17T 0.60 TCGA-18-3409-01 14 22957638 22957638 C T TRAJ50 Missense_Mutation p.P20L 0.36 unknown(0) TCGA-18-3409-01 14 23235850 23235850 C T OXA1L Silent p.F40F 0.12 TCGA-18-3409-01 14 23502794 23502794 G A PSMB5 Silent p.I96I 0.17 TCGA-18-3409-01 14 23847659 23847659 C T CMTM5 Silent p.L76L 0.43 TCGA-18-3409-01 14 23863333 23863333 C T MYH6 Missense_Mutation p.E877K 0.13 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 14 23869531 23869531 C T MYH6 Silent p.E505E 0.63 TCGA-18-3409-01 14 24528918 24528918 G A LRRC16B Silent p.L615L 0.55 TCGA-18-3409-01 14 24878047 24878047 C G NYNRIN Silent p.A349A 0.16 TCGA-18-3409-01 14 24884157 24884157 C T NYNRIN Missense_Mutation p.P1068S 0.57 deleterious(0.01) probably_damaging(0.998) TCGA-18-3409-01 14 24901146 24901146 C T KHNYN Missense_Mutation p.P227S 0.15 tolerated(0.45) benign(0.003) TCGA-18-3409-01 14 25043013 25043013 C T CTSG Missense_Mutation p.D200N 0.14 deleterious(0.01) probably_damaging(1) TCGA-18-3409-01 14 25043646 25043646 C T CTSG Silent p.Q133Q 0.12 TCGA-18-3409-01 14 25102253 25102253 C T GZMB Missense_Mutation p.G24E 0.17 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 14 30103746 30103746 G A PRKD1 Missense_Mutation p.P398S 0.52 tolerated(0.37) benign(0.086) TCGA-18-3409-01 14 30194832 30194832 G A PRKD1 Missense_Mutation p.R105C 0.09 deleterious(0) probably_damaging(0.953) TCGA-18-3409-01 14 31354713 31354713 G A COCH Missense_Mutation p.E283K 0.47 deleterious(0.03) probably_damaging(0.972) TCGA-18-3409-01 14 31604320 31604320 G A HECTD1 Silent p.G1112G 0.50 TCGA-18-3409-01 14 35228004 35228004 C T BAZ1A Missense_Mutation p.G1431E 0.12 deleterious(0) probably_damaging(1) TCGA-18-3409-01 14 35228005 35228005 C T BAZ1A Missense_Mutation p.G1431R 0.12 deleterious(0) probably_damaging(1) TCGA-18-3409-01 14 36780893 36780893 G A MBIP Missense_Mutation p.P226S 0.45 tolerated(0.76) benign(0.002) TCGA-18-3409-01 14 39709774 39709774 G A MIA2 Missense_Mutation p.E87K 0.20 deleterious(0) benign(0.295) TCGA-18-3409-01 14 39815168 39815168 C T CTAGE5 Missense_Mutation p.S636F 0.57 deleterious(0.02) benign(0.115) TCGA-18-3409-01 14 39818103 39818103 C T CTAGE5 Missense_Mutation p.P729S 0.30 deleterious(0) possibly_damaging(0.89) TCGA-18-3409-01 14 44975146 44975146 C T FSCB Missense_Mutation p.E349K 0.49 tolerated(0.1) benign(0.099) TCGA-18-3409-01 14 44975992 44975992 C T FSCB Missense_Mutation p.E67K 0.46 deleterious(0.01) benign(0.348) TCGA-18-3409-01 14 45473474 45473474 C T FAM179B Missense_Mutation p.S850F 0.10 deleterious(0) probably_damaging(0.997) TCGA-18-3409-01 14 47504454 47504454 C A MDGA2 Nonsense_Mutation p.G527* 0.54 TCGA-18-3409-01 14 50101289 50101289 C T DNAAF2 Silent p.K193K 0.14 TCGA-18-3409-01 14 50272849 50272849 C T NEMF Missense_Mutation p.E583K 0.50 tolerated(0.4) benign(0.139) TCGA-18-3409-01 14 50824773 50824773 G A CDKL1 Intron 0.48 TCGA-18-3409-01 14 52182080 52182080 C T FRMD6 Missense_Mutation p.S296F 0.17 deleterious(0) probably_damaging(0.966) TCGA-18-3409-01 14 52534585 52534585 G T NID2 Silent p.P175P 0.62 TCGA-18-3409-01 14 54894455 54894455 G A CNIH1 3'UTR 0.36 TCGA-18-3409-01 14 55429227 55429227 G A WDHD1 Missense_Mutation p.S897L 0.48 tolerated(0.28) benign(0.001) TCGA-18-3409-01 14 57103235 57103235 A G TMEM260 Silent p.T596T 0.53 TCGA-18-3409-01 14 60212645 60212645 C T RTN1 Missense_Mutation p.D266N 0.48 deleterious(0.03) benign(0.013) TCGA-18-3409-01 14 60581593 60581593 T G PCNXL4 Missense_Mutation p.L55V 0.15 tolerated(0.15) benign(0.137) TCGA-18-3409-01 14 63174668 63174668 T G KCNH5 Missense_Mutation p.E842A 0.52 tolerated_low_confidence(0.1) benign(0) TCGA-18-3409-01 14 63269105 63269105 G A KCNH5 Silent p.C588C 0.36 TCGA-18-3409-01 14 63269132 63269132 A C KCNH5 Missense_Mutation p.H579Q 0.37 deleterious(0.03) benign(0.27) TCGA-18-3409-01 14 63784447 63784447 C T GPHB5 RNA 0.44 TCGA-18-3409-01 14 64483250 64483250 G A SYNE2 Silent p.Q1596Q 0.48 TCGA-18-3409-01 14 64540702 64540702 C T SYNE2 Nonsense_Mutation p.Q3572* 0.51 TCGA-18-3409-01 14 64691254 64691254 C T SYNE2 Missense_Mutation p.P6820S 0.17 benign(0.023) TCGA-18-3409-01 14 64898345 64898345 C T MTHFD1 Silent p.T469T 0.19 TCGA-18-3409-01 14 65054875 65054875 C T PPP1R36 Missense_Mutation p.P315L 0.11 deleterious(0.01) probably_damaging(1) TCGA-18-3409-01 14 65207903 65207903 C T PLEKHG3 Silent p.P500P 0.14 TCGA-18-3409-01 14 66208891 66208891 C T FUT8 Silent p.Y497Y 0.52 TCGA-18-3409-01 14 66209112 66209112 C T FUT8 Missense_Mutation p.P571L 0.50 deleterious(0) benign(0.212) TCGA-18-3409-01 14 68221818 68221818 C T ZFYVE26 Silent p.R2312R 0.46 TCGA-18-3409-01 14 68221819 68221819 C T ZFYVE26 Missense_Mutation p.R2312K 0.46 tolerated(0.37) benign(0.001) TCGA-18-3409-01 14 68228265 68228265 C T ZFYVE26 Missense_Mutation p.E2136K 0.50 tolerated(0.07) benign(0.122) TCGA-18-3409-01 14 69360386 69360386 T A ACTN1 Nonsense_Mutation p.K281* 0.11 TCGA-18-3409-01 14 69814762 69814762 G A GALNT16 Intron 0.43 TCGA-18-3409-01 14 69814763 69814763 G A GALNT16 Intron 0.43 TCGA-18-3409-01 14 70515755 70515755 C T SLC8A3 Silent p.G712G 0.45 TCGA-18-3409-01 14 71209074 71209074 G A MAP3K9 Missense_Mutation p.P521S 0.41 deleterious(0) possibly_damaging(0.623) TCGA-18-3409-01 14 71542926 71542926 G C PCNX Silent p.T1709T 0.33 TCGA-18-3409-01 14 72202099 72202099 C T SIPA1L1 Missense_Mutation p.P1726L 0.49 tolerated(0.33) benign(0.003) TCGA-18-3409-01 14 73726100 73726100 C T PAPLN Missense_Mutation p.S584F 0.50 tolerated(0.07) possibly_damaging(0.789) TCGA-18-3409-01 14 73743958 73743958 G A NUMB Silent p.L428L 0.48 TCGA-18-3409-01 14 74060560 74060560 C T ACOT4 Silent p.S204S 0.46 TCGA-18-3409-01 14 74416685 74416685 C T FAM161B Silent p.G78G 0.09 TCGA-18-3409-01 14 75276419 75276419 C T YLPM1 Missense_Mutation p.P1620S 0.52 probably_damaging(0.937) TCGA-18-3409-01 14 75282952 75282952 T C YLPM1 Missense_Mutation p.V1850A 0.52 possibly_damaging(0.839) TCGA-18-3409-01 14 75283756 75283756 C T YLPM1 Silent p.D1936D 0.62 TCGA-18-3409-01 14 75302035 75302035 G A YLPM1 Missense_Mutation p.G2121E 0.47 probably_damaging(0.999) TCGA-18-3409-01 14 75321913 75321913 C T PROX2 Silent p.K340K 0.18 TCGA-18-3409-01 14 76488675 76488675 C T IFT43 Silent p.S51S 0.43 TCGA-18-3409-01 14 77269739 77269739 C T ANGEL1 Missense_Mutation p.M531I 0.17 tolerated(1) benign(0.002) TCGA-18-3409-01 14 81744523 81744523 G A STON2 Missense_Mutation p.H378Y 0.32 tolerated(0.12) benign(0.371) TCGA-18-3409-01 14 89181377 89181377 G A EML5 Silent p.S450S 0.53 TCGA-18-3409-01 14 89878376 89878376 G A FOXN3 Missense_Mutation p.P149S 0.39 deleterious(0) probably_damaging(0.983) TCGA-18-3409-01 14 90450857 90450857 C T TDP1 Intron 0.46 TCGA-18-3409-01 14 93676181 93676181 G A RP11-371E8.4 Silent p.K73K 0.21 TCGA-18-3409-01 14 93708946 93708946 C T BTBD7 Silent p.P1024P 0.47 TCGA-18-3409-01 14 94069764 94069764 C T UNC79 Nonsense_Mutation p.R1075* 0.17 TCGA-18-3409-01 14 94088203 94088203 C T UNC79 Missense_Mutation p.P1365S 0.08 tolerated_low_confidence(0.7) benign(0) TCGA-18-3409-01 14 95054239 95054239 G A SERPINA5 Silent p.T180T 0.48 TCGA-18-3409-01 14 95557423 95557423 G A DICER1 Missense_Mutation p.R1851C 0.18 deleterious(0) probably_damaging(0.99) TCGA-18-3409-01 14 95574758 95574758 G A DICER1 Missense_Mutation p.P780L 0.37 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 14 95669744 95669744 C T CLMN Missense_Mutation p.E648K 0.44 deleterious_low_confidence(0) possibly_damaging(0.521) TCGA-18-3409-01 14 96730835 96730835 G A BDKRB1 Silent p.L272L 0.48 TCGA-18-3409-01 14 96813608 96813608 G A ATG2B Missense_Mutation p.S78F 0.62 deleterious(0.03) probably_damaging(0.993) TCGA-18-3409-01 14 99865013 99865013 G A SETD3 3'UTR 0.08 TCGA-18-3409-01 14 99968655 99968655 C T CCNK Silent p.P229P 0.17 TCGA-18-3409-01 15 100589176 100589176 G A ADAMTS17 Missense_Mutation p.S826L 0.30 tolerated(0.3) benign(0.306) TCGA-18-3409-01 15 100692938 100692938 G A ADAMTS17 Missense_Mutation p.T451M 0.30 deleterious(0.03) probably_damaging(1) TCGA-18-3409-01 15 100821497 100821497 G A ADAMTS17 Silent p.A242A 0.28 TCGA-18-3409-01 15 100821498 100821498 G A ADAMTS17 Missense_Mutation p.A242V 0.27 tolerated(0.16) benign(0.248) TCGA-18-3409-01 15 101528975 101528975 C T LRRK1 Silent p.F190F 0.45 TCGA-18-3409-01 15 101565079 101565079 C T LRRK1 Silent p.F713F 0.29 TCGA-18-3409-01 15 101872087 101872087 C T PCSK6 Missense_Mutation p.E669K 0.37 tolerated(0.17) benign(0.251) TCGA-18-3409-01 15 101872088 101872088 C T PCSK6 Silent p.V668V 0.37 TCGA-18-3409-01 15 101922317 101922317 G A PCSK6 Silent p.A503A 0.23 TCGA-18-3409-01 15 102242492 102242492 C T TARSL2 Missense_Mutation p.E391K 0.27 tolerated(0.51) benign(0.006) TCGA-18-3409-01 15 102313018 102313018 G A RN7SL209P 3'Flank 0.33 TCGA-18-3409-01 15 102346096 102346096 C T OR4F6 Silent p.P58P 0.29 TCGA-18-3409-01 15 20496690 20496690 C T CHEK2P2 RNA 0.12 TCGA-18-3409-01 15 20649560 20649560 C T HERC2P3 RNA 0.17 TCGA-18-3409-01 15 21051221 21051221 C T POTEB2 Silent p.R413R 0.14 TCGA-18-3409-01 15 22955156 22955156 C T CYFIP1 Missense_Mutation p.T517I 0.37 tolerated(0.05) possibly_damaging(0.517) TCGA-18-3409-01 15 22991198 22991198 C T CYFIP1 Missense_Mutation p.P963S 0.15 deleterious(0) probably_damaging(0.929) TCGA-18-3409-01 15 23689639 23689639 C T GOLGA6L2 Silent p.Q74Q 0.47 TCGA-18-3409-01 15 23811263 23811263 G A MKRN3 Missense_Mutation p.G112R 0.33 deleterious(0) probably_damaging(0.981) TCGA-18-3409-01 15 23812595 23812595 C T MKRN3 3'UTR 0.30 TCGA-18-3409-01 15 23890071 23890071 G A MAGEL2 Missense_Mutation p.P337L 0.40 tolerated(0.07) benign(0.058) TCGA-18-3409-01 15 24921171 24921171 C T NPAP1 Missense_Mutation p.R53W 0.31 tolerated(0.16) possibly_damaging(0.835) TCGA-18-3409-01 15 24921212 24921212 C T NPAP1 Silent p.V66V 0.30 TCGA-18-3409-01 15 24921772 24921772 G A NPAP1 Missense_Mutation p.G253E 0.18 tolerated(0.31) possibly_damaging(0.794) TCGA-18-3409-01 15 24921840 24921840 T C NPAP1 Silent p.L276L 0.31 TCGA-18-3409-01 15 24922790 24922790 C T NPAP1 Silent p.S592S 0.37 TCGA-18-3409-01 15 24923080 24923080 C T NPAP1 Missense_Mutation p.S689L 0.15 tolerated(0.07) possibly_damaging(0.542) TCGA-18-3409-01 15 25342901 25342901 C T SNORD116-25 RNA 0.33 TCGA-18-3409-01 15 25349764 25349764 C T SNORD116-30 5'Flank 0.21 TCGA-18-3409-01 15 25422016 25422016 G A SNORD115-4 RNA 0.31 TCGA-18-3409-01 15 25438473 25438473 G A SNORD115-11 3'Flank 0.30 TCGA-18-3409-01 15 25475885 25475885 G T SNORD115-33 5'Flank 0.38 TCGA-18-3409-01 15 25479237 25479237 C T SNORD115-33 3'Flank 0.35 TCGA-18-3409-01 15 25479312 25479312 C T SNORD115-33 3'Flank 0.43 TCGA-18-3409-01 15 25925106 25925106 G A ATP10A Silent p.S1294S 0.20 TCGA-18-3409-01 15 25972344 25972344 C T ATP10A Silent p.R270R 0.27 TCGA-18-3409-01 15 28386602 28386602 G A HERC2 Silent p.L3997L 0.23 TCGA-18-3409-01 15 28391399 28391399 G A HERC2 Silent p.I3664I 0.32 TCGA-18-3409-01 15 28413656 28413656 G A HERC2 Missense_Mutation p.S3437F 0.31 benign(0.44) TCGA-18-3409-01 15 28508279 28508279 T A HERC2 Missense_Mutation p.K636I 0.15 probably_damaging(0.994) TCGA-18-3409-01 15 29093823 29093823 G A GOLGA6L7P 5'Flank 0.31 TCGA-18-3409-01 15 29346206 29346206 G A APBA2 Missense_Mutation p.G40D 0.24 tolerated_low_confidence(0.46) benign(0.002) TCGA-18-3409-01 15 29346759 29346759 G A APBA2 Silent p.E224E 0.31 TCGA-18-3409-01 15 29400587 29400587 G A APBA2 Missense_Mutation p.G678R 0.35 deleterious(0) probably_damaging(0.992) TCGA-18-3409-01 15 30058721 30058721 G A TJP1 Nonsense_Mutation p.Q113* 0.30 TCGA-18-3409-01 15 33261033 33261033 G A FMN1 Missense_Mutation p.P734S 0.32 tolerated_low_confidence(0.24) unknown(0) TCGA-18-3409-01 15 33261034 33261034 G A FMN1 Silent p.P733P 0.33 TCGA-18-3409-01 15 33261074 33261074 G A FMN1 Missense_Mutation p.P720L 0.43 tolerated_low_confidence(0.67) unknown(0) TCGA-18-3409-01 15 34015006 34015006 G A RYR3 Missense_Mutation p.G2237E 0.34 probably_damaging(1) TCGA-18-3409-01 15 34047308 34047308 G A RYR3 Silent p.K2814K 0.32 TCGA-18-3409-01 15 34159869 34159869 T G AVEN Missense_Mutation p.D267A 0.27 tolerated(0.75) benign(0.007) TCGA-18-3409-01 15 34551145 34551145 C T SLC12A6 Missense_Mutation p.E138K 0.21 deleterious(0) possibly_damaging(0.818) TCGA-18-3409-01 15 34648436 34648436 G A NUTM1 Missense_Mutation p.D715N 0.36 tolerated(0.47) benign(0) TCGA-18-3409-01 15 35149101 35149101 G A AQR Silent p.A1450A 0.36 TCGA-18-3409-01 15 35202474 35202474 G A AQR Nonsense_Mutation p.R509* 0.37 TCGA-18-3409-01 15 37110095 37110095 C T CSNK1A1P1 RNA 0.38 TCGA-18-3409-01 15 39874751 39874751 C T THBS1 Missense_Mutation p.S142F 0.33 deleterious(0.01) benign(0.389) TCGA-18-3409-01 15 40293219 40293219 G A EIF2AK4 Missense_Mutation p.D985N 0.33 deleterious(0) possibly_damaging(0.537) TCGA-18-3409-01 15 40855148 40855148 A G C15orf57 Missense_Mutation p.C32R 0.35 deleterious(0) probably_damaging(1) TCGA-18-3409-01 15 41102149 41102149 C T ZFYVE19 Silent p.L184L 0.42 TCGA-18-3409-01 15 41817284 41817284 C A RPAP1 Silent p.L660L 0.39 TCGA-18-3409-01 15 41820527 41820527 C T RPAP1 Missense_Mutation p.G389E 0.40 deleterious(0) probably_damaging(1) TCGA-18-3409-01 15 42107463 42107463 C T MAPKBP1 Missense_Mutation p.P399S 0.15 deleterious(0) possibly_damaging(0.787) TCGA-18-3409-01 15 42107464 42107464 C T MAPKBP1 Missense_Mutation p.P399L 0.16 deleterious(0) probably_damaging(0.928) TCGA-18-3409-01 15 42279560 42279560 G A PLA2G4E Silent p.I615I 0.26 TCGA-18-3409-01 15 42436707 42436707 G A PLA2G4F Missense_Mutation p.T639I 0.39 tolerated(0.14) benign(0.005) TCGA-18-3409-01 15 42553440 42553440 G A TMEM87A Missense_Mutation p.S138F 0.16 tolerated(0.66) benign(0.001) TCGA-18-3409-01 15 42580012 42580012 G T GANC Missense_Mutation p.V109L 0.29 benign(0.002) TCGA-18-3409-01 15 42652294 42652294 C T CAPN3 Silent p.F97F 0.28 TCGA-18-3409-01 15 42710095 42710095 G A ZNF106 Silent p.L1835L 0.31 TCGA-18-3409-01 15 42717087 42717087 T A ZNF106 Missense_Mutation p.N1689I 0.26 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 15 42734294 42734294 G A ZNF106 Missense_Mutation p.S1224F 0.24 deleterious(0.02) possibly_damaging(0.723) TCGA-18-3409-01 15 42743038 42743038 G A ZNF106 Missense_Mutation p.L455F 0.37 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 15 43594442 43594442 G A TGM7 Nonsense_Mutation p.Q3* 0.31 TCGA-18-3409-01 15 43817847 43817847 G A MAP1A Silent p.E1392E 0.35 TCGA-18-3409-01 15 43873267 43873267 C T PPIP5K1 Missense_Mutation p.D332N 0.22 deleterious(0.02) probably_damaging(0.954) TCGA-18-3409-01 15 43895470 43895470 T C STRC Silent p.E1505E 0.15 TCGA-18-3409-01 15 44856758 44856758 C T SPG11 Missense_Mutation p.E2380K 0.31 deleterious(0.01) possibly_damaging(0.801) TCGA-18-3409-01 15 44892803 44892803 G A SPG11 Missense_Mutation p.S1183F 0.35 deleterious(0) probably_damaging(0.919) TCGA-18-3409-01 15 45052027 45052027 C T TRIM69 Silent p.I306I 0.38 TCGA-18-3409-01 15 45332620 45332620 C T SORD Silent p.I27I 0.22 TCGA-18-3409-01 15 45353282 45353282 G A SORD Missense_Mutation p.E95K 0.33 deleterious(0) probably_damaging(0.974) TCGA-18-3409-01 15 48063453 48063453 G A SEMA6D Missense_Mutation p.G898E 0.37 tolerated(0.32) benign(0.394) TCGA-18-3409-01 15 48426492 48426492 C T SLC24A5 Silent p.F113F 0.21 TCGA-18-3409-01 15 48458162 48458162 C T MYEF2 Missense_Mutation p.D165N 0.35 tolerated(0.24) benign(0.444) TCGA-18-3409-01 15 48787353 48787353 C A FBN1 Missense_Mutation p.A882S 0.43 probably_damaging(0.999) TCGA-18-3409-01 15 48903022 48903022 G A FBN1 Silent p.P83P 0.17 TCGA-18-3409-01 15 49447856 49447856 C T COPS2 5'UTR 0.33 TCGA-18-3409-01 15 49716680 49716680 G A FGF7 Silent p.G62G 0.25 TCGA-18-3409-01 15 49882084 49882084 G A FAM227B Nonsense_Mutation p.R76* 0.18 TCGA-18-3409-01 15 50534417 50534417 C T HDC 3'UTR 0.11 TCGA-18-3409-01 15 50769124 50769124 C T USP8 Nonsense_Mutation p.Q310* 0.40 TCGA-18-3409-01 15 52497304 52497304 G A MYO5C Silent p.S1526S 0.31 TCGA-18-3409-01 15 52700311 52700311 G A MYO5A Silent p.I261I 0.29 TCGA-18-3409-01 15 54305353 54305353 G A UNC13C Missense_Mutation p.E85K 0.33 deleterious_low_confidence(0.01) benign(0.146) TCGA-18-3409-01 15 54307087 54307087 G A UNC13C Missense_Mutation p.G663R 0.42 deleterious_low_confidence(0) benign(0.261) TCGA-18-3409-01 15 54307123 54307123 G A UNC13C Missense_Mutation p.G675S 0.24 tolerated_low_confidence(0.35) benign(0.001) TCGA-18-3409-01 15 54630615 54630615 G A UNC13C Silent p.R1547R 0.33 TCGA-18-3409-01 15 54914535 54914535 C T UNC13C Silent p.S2039S 0.26 TCGA-18-3409-01 15 57730805 57730805 C T CGNL1 Missense_Mutation p.P203L 0.30 tolerated(0.05) benign(0.003) TCGA-18-3409-01 15 58467217 58467217 G A AQP9 Silent p.A159A 0.28 TCGA-18-3409-01 15 59373363 59373363 C T RNF111 Missense_Mutation p.P726L 0.33 deleterious(0.02) benign(0.406) TCGA-18-3409-01 15 59499206 59499206 T A LDHAL6B Missense_Mutation p.C23S 0.26 tolerated_low_confidence(0.51) benign(0.001) TCGA-18-3409-01 15 59750812 59750812 G A FAM81A 5'UTR 0.31 TCGA-18-3409-01 15 62255038 62255038 G A VPS13C Silent p.S1115S 0.28 TCGA-18-3409-01 15 62255039 62255039 G A VPS13C Missense_Mutation p.S1115F 0.28 tolerated(0.09) benign(0.03) TCGA-18-3409-01 15 62266527 62266527 G A VPS13C Missense_Mutation p.P833L 0.32 deleterious(0) probably_damaging(1) TCGA-18-3409-01 15 62315640 62315640 G A VPS13C Silent p.I198I 0.28 TCGA-18-3409-01 15 63044536 63044536 G A TLN2 Silent p.Q1414Q 0.26 TCGA-18-3409-01 15 64365189 64365189 C A FAM96A Missense_Mutation p.A142S 0.25 deleterious(0) probably_damaging(0.996) TCGA-18-3409-01 15 64497066 64497066 G A CSNK1G1 Missense_Mutation p.P283L 0.21 deleterious(0) probably_damaging(1) TCGA-18-3409-01 15 65110521 65110521 G A PIF1 Missense_Mutation p.S488L 0.29 deleterious(0.03) benign(0.081) TCGA-18-3409-01 15 65157114 65157114 C T PLEKHO2 Missense_Mutation p.S167F 0.19 deleterious(0) probably_damaging(0.974) TCGA-18-3409-01 15 65458972 65458972 C T CLPX Silent p.K170K 0.24 TCGA-18-3409-01 15 65621148 65621148 C T IGDCC3 3'UTR 0.40 TCGA-18-3409-01 15 65621935 65621935 C T IGDCC3 Silent p.R666R 0.39 TCGA-18-3409-01 15 65680880 65680880 G A IGDCC4 Missense_Mutation p.R918W 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-18-3409-01 15 66223281 66223281 C T MEGF11 Missense_Mutation p.G430R 0.39 deleterious(0) probably_damaging(0.972) TCGA-18-3409-01 15 66416238 66416238 G A MEGF11 Missense_Mutation p.R67W 0.38 deleterious(0) probably_damaging(0.991) TCGA-18-3409-01 15 66845452 66845452 G A LCTL Missense_Mutation p.S356F 0.26 tolerated(0.1) benign(0.151) TCGA-18-3409-01 15 68617468 68617468 C T ITGA11 Splice_Site p.X774_splice 0.38 TCGA-18-3409-01 15 69339854 69339854 C T NOX5 Silent p.S598S 0.37 TCGA-18-3409-01 15 69341321 69341321 G A NOX5 Missense_Mutation p.R641K 0.24 deleterious(0) probably_damaging(0.996) TCGA-18-3409-01 15 72668358 72668358 C T HEXA 5'UTR 0.35 TCGA-18-3409-01 15 72700100 72700100 C T TMEM202 Missense_Mutation p.P230S 0.27 deleterious(0.01) probably_damaging(1) TCGA-18-3409-01 15 72953606 72953606 C T GOLGA6B Missense_Mutation p.S189F 0.27 tolerated(0.36) possibly_damaging(0.683) TCGA-18-3409-01 15 74032779 74032779 G A C15orf59 Missense_Mutation p.P121S 0.25 tolerated(0.06) probably_damaging(0.999) TCGA-18-3409-01 15 74426484 74426484 C T ISLR2 Silent p.D463D 0.25 TCGA-18-3409-01 15 74426485 74426485 C T ISLR2 Missense_Mutation p.P464S 0.25 tolerated(0.98) benign(0.003) TCGA-18-3409-01 15 74564127 74564127 G A CCDC33 Silent p.K210K 0.44 TCGA-18-3409-01 15 74704319 74704319 C T SEMA7A Silent p.G443G 0.20 TCGA-18-3409-01 15 75012792 75012792 C T CYP1A1 3'UTR 0.33 TCGA-18-3409-01 15 75013790 75013790 T C CYP1A1 Missense_Mutation p.N336S 0.35 tolerated(0.1) benign(0.014) TCGA-18-3409-01 15 75094051 75094051 C T CSK Silent p.A301A 0.37 TCGA-18-3409-01 15 75112435 75112435 C T LMAN1L Missense_Mutation p.P257S 0.26 tolerated(0.08) benign(0.02) TCGA-18-3409-01 15 76206519 76206519 C T FBXO22 Missense_Mutation p.L146F 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-18-3409-01 15 77025690 77025690 G A SCAPER Silent p.A634A 0.16 TCGA-18-3409-01 15 77907381 77907381 G A LINGO1 Missense_Mutation p.R290C 0.29 deleterious(0.02) probably_damaging(0.931) TCGA-18-3409-01 15 78471062 78471062 C T ACSBG1 Missense_Mutation p.M532I 0.37 tolerated(0.09) possibly_damaging(0.685) TCGA-18-3409-01 15 78471990 78471990 G A ACSBG1 Silent p.F462F 0.40 TCGA-18-3409-01 15 78500387 78500387 G A ACSBG1 Silent p.L63L 0.21 TCGA-18-3409-01 15 78755400 78755400 C T IREB2 Silent p.F81F 0.37 TCGA-18-3409-01 15 79063624 79063624 G A ADAMTS7 Missense_Mutation p.P800S 0.30 deleterious(0) probably_damaging(0.973) TCGA-18-3409-01 15 79323819 79323819 G A RASGRF1 Silent p.L395L 0.30 TCGA-18-3409-01 15 79323849 79323849 G A RASGRF1 Silent p.I385I 0.33 TCGA-18-3409-01 15 79749282 79749282 C T KIAA1024 Missense_Mutation p.H265Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 15 80415061 80415061 C T ZFAND6 Missense_Mutation p.L95F 0.31 tolerated(0.27) benign(0.046) TCGA-18-3409-01 15 83395764 83395764 G A AC105339.2 5'Flank 0.36 TCGA-18-3409-01 15 85085475 85085475 G A UBE2Q2P1 RNA 0.23 TCGA-18-3409-01 15 85476451 85476451 C T SLC28A1 Missense_Mutation p.P387S 0.18 deleterious(0) probably_damaging(0.94) TCGA-18-3409-01 15 85476452 85476452 C T SLC28A1 Missense_Mutation p.P387L 0.20 deleterious(0) probably_damaging(0.962) TCGA-18-3409-01 15 86198952 86198952 C T AKAP13 Missense_Mutation p.P1560L 0.27 deleterious(0) probably_damaging(1) TCGA-18-3409-01 15 86697721 86697721 C T AGBL1 Missense_Mutation p.A62V 0.26 tolerated(1) benign(0.426) TCGA-18-3409-01 15 89388994 89388994 G A ACAN Missense_Mutation p.G437E 0.25 tolerated(1) unknown(0) TCGA-18-3409-01 15 89744672 89744672 C T ABHD2 3'UTR 0.35 TCGA-18-3409-01 15 89872200 89872200 G A POLG Nonsense_Mutation p.Q333* 0.29 TCGA-18-3409-01 15 90126188 90126188 C T TICRR Missense_Mutation p.P309L 0.27 deleterious(0) possibly_damaging(0.851) TCGA-18-3409-01 15 90188364 90188364 G A KIF7 Missense_Mutation p.R691C 0.29 tolerated(0.2) benign(0.005) TCGA-18-3409-01 15 90188365 90188365 G A KIF7 Silent p.A690A 0.29 TCGA-18-3409-01 15 91025317 91025317 C T IQGAP1 Missense_Mutation p.S1152F 0.24 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 15 91424898 91424898 C T FURIN Silent p.I725I 0.35 TCGA-18-3409-01 15 91447563 91447563 C T MAN2A2 Silent p.F42F 0.31 TCGA-18-3409-01 15 91447564 91447564 C T MAN2A2 Missense_Mutation p.P43S 0.32 deleterious(0.01) possibly_damaging(0.792) TCGA-18-3409-01 15 91447565 91447565 C T MAN2A2 Missense_Mutation p.P43L 0.32 deleterious(0.01) probably_damaging(0.939) TCGA-18-3409-01 15 91448890 91448890 C T MAN2A2 Missense_Mutation p.P158S 0.31 tolerated(0.53) benign(0.089) TCGA-18-3409-01 15 91450582 91450582 C T MAN2A2 Silent p.F351F 0.33 TCGA-18-3409-01 15 97327464 97327464 G T SPATA8 Missense_Mutation p.K57N 0.46 tolerated_low_confidence(0.12) possibly_damaging(0.607) TCGA-18-3409-01 15 97328247 97328247 G A SPATA8 Missense_Mutation p.R73K 0.26 tolerated_low_confidence(0.53) benign(0.14) TCGA-18-3409-01 15 98513180 98513180 C T ARRDC4 Missense_Mutation p.P317L 0.17 deleterious(0) probably_damaging(0.996) TCGA-18-3409-01 15 99672261 99672261 G A SYNM Silent p.K1231K 0.30 TCGA-18-3409-01 15 99672262 99672262 G A SYNM Missense_Mutation p.E1232K 0.30 deleterious(0.04) probably_damaging(0.913) TCGA-18-3409-01 16 10788716 10788716 C T TEKT5 Silent p.G5G 0.66 TCGA-18-3409-01 16 10788717 10788717 C T TEKT5 Missense_Mutation p.G5E 0.66 deleterious(0) probably_damaging(0.993) TCGA-18-3409-01 16 10855685 10855685 C A NUBP1 Silent p.L263L 0.59 TCGA-18-3409-01 16 11362727 11362727 C T TNP2 Silent p.R131R 0.75 TCGA-18-3409-01 16 11650521 11650521 G A LITAF Silent p.S22S 0.36 TCGA-18-3409-01 16 1257787 1257787 C T CACNA1H Silent p.S1027S 0.80 TCGA-18-3409-01 16 1394101 1394101 C T BAIAP3 Missense_Mutation p.P524S 0.36 deleterious(0) benign(0.24) TCGA-18-3409-01 16 15222182 15222182 C T RP11-1186N24.5 RNA 0.45 TCGA-18-3409-01 16 1545551 1545551 C T TELO2 Silent p.F180F 0.66 TCGA-18-3409-01 16 15818393 15818393 G T NDE1 3'UTR 0.33 TCGA-18-3409-01 16 15829337 15829337 C T MYH11 Missense_Mutation p.R1138Q 0.63 benign(0.015) TCGA-18-3409-01 16 16367898 16367898 T C NOMO3 Silent p.F774F 0.62 TCGA-18-3409-01 16 17353133 17353133 G A XYLT1 Missense_Mutation p.P209S 0.21 tolerated_low_confidence(0.49) benign(0.028) TCGA-18-3409-01 16 18810056 18810056 G A ARL6IP1 Missense_Mutation p.P46L 0.28 tolerated(0.67) benign(0.084) TCGA-18-3409-01 16 18810057 18810057 G A ARL6IP1 Missense_Mutation p.P46S 0.28 tolerated(0.48) benign(0.007) TCGA-18-3409-01 16 18844347 18844347 G A SMG1 Silent p.L2903L 0.23 TCGA-18-3409-01 16 19068005 19068005 C T TMC7 Silent p.F671F 0.46 TCGA-18-3409-01 16 19083408 19083408 A T COQ7 Missense_Mutation p.S78C 0.15 deleterious(0.01) probably_damaging(0.926) TCGA-18-3409-01 16 19195301 19195301 C T SYT17 Silent p.T261T 0.25 TCGA-18-3409-01 16 20322539 20322539 G A GP2 3'UTR 0.70 TCGA-18-3409-01 16 20471551 20471551 G A ACSM2A Missense_Mutation p.E39K 0.40 deleterious(0.04) benign(0.005) TCGA-18-3409-01 16 20494415 20494415 C T ACSM2A Silent p.F515F 0.28 TCGA-18-3409-01 16 20494431 20494431 G A ACSM2A Missense_Mutation p.E521K 0.31 tolerated(0.12) benign(0.033) TCGA-18-3409-01 16 20548624 20548624 G A ACSM2B Nonsense_Mutation p.R564* 0.26 TCGA-18-3409-01 16 20873630 20873630 C T DCUN1D3 Silent p.R77R 0.26 TCGA-18-3409-01 16 20966324 20966324 C T DNAH3 Missense_Mutation p.G3628R 0.19 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 16 20975616 20975616 G A DNAH3 Missense_Mutation p.T3197I 0.21 deleterious(0) probably_damaging(1) TCGA-18-3409-01 16 21049287 21049287 G A DNAH3 Silent p.I1582I 0.44 TCGA-18-3409-01 16 21208822 21208822 T A ZP2 Missense_Mutation p.K739N 0.31 deleterious(0.02) benign(0.086) TCGA-18-3409-01 16 22161125 22161125 T A VWA3A Missense_Mutation p.F1001Y 0.17 deleterious(0.01) probably_damaging(0.986) TCGA-18-3409-01 16 2236736 2236736 G A CASKIN1 Silent p.S340S 0.17 TCGA-18-3409-01 16 2285582 2285582 C T E4F1 3'UTR 0.50 TCGA-18-3409-01 16 2312359 2312359 G A RNPS1 Missense_Mutation p.P199L 0.23 deleterious(0.02) possibly_damaging(0.667) TCGA-18-3409-01 16 23700940 23700940 C T PLK1 Silent p.T517T 0.26 TCGA-18-3409-01 16 2376095 2376095 C T ABCA3 Missense_Mutation p.E79K 0.82 deleterious(0.01) benign(0.363) TCGA-18-3409-01 16 24196821 24196821 C T PRKCB Missense_Mutation p.S552F 0.25 deleterious(0) probably_damaging(0.977) TCGA-18-3409-01 16 24567164 24567164 C T RBBP6 Missense_Mutation p.P154S 0.19 deleterious_low_confidence(0) possibly_damaging(0.812) TCGA-18-3409-01 16 24831651 24831651 T A TNRC6A Missense_Mutation p.W1758R 0.29 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 16 2522450 2522450 C T NTN3 Nonsense_Mutation p.Q250* 0.39 TCGA-18-3409-01 16 27363934 27363934 C T IL4R Missense_Mutation p.S196F 0.35 tolerated(0.82) benign(0.008) TCGA-18-3409-01 16 27460557 27460557 G A IL21R Missense_Mutation p.V524M 0.32 deleterious(0) probably_damaging(0.979) TCGA-18-3409-01 16 27506152 27506152 G A GTF3C1 Missense_Mutation p.L904F 0.21 deleterious(0) possibly_damaging(0.894) TCGA-18-3409-01 16 28925737 28925737 G A RABEP2 Silent p.S238S 0.31 TCGA-18-3409-01 16 29107488 29107488 A T RRN3P2 RNA 0.47 TCGA-18-3409-01 16 29855860 29855860 C T MVP Missense_Mutation p.L561F 0.42 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 16 29998422 29998422 C T TAOK2 Silent p.L943L 0.27 TCGA-18-3409-01 16 29998423 29998423 C T TAOK2 Missense_Mutation p.P944S 0.28 deleterious_low_confidence(0.01) benign(0.022) TCGA-18-3409-01 16 29998717 29998717 C T TAOK2 Missense_Mutation p.P1042S 0.50 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-18-3409-01 16 30037018 30037018 G A FAM57B Intron 0.26 TCGA-18-3409-01 16 30123683 30123683 G A GDPD3 Missense_Mutation p.P143S 0.23 deleterious(0) probably_damaging(1) TCGA-18-3409-01 16 30390855 30390855 C T SEPT1 Missense_Mutation p.E226K 0.28 benign(0.015) TCGA-18-3409-01 16 304623 304623 C T ITFG3 Missense_Mutation p.P71S 0.57 deleterious(0) probably_damaging(0.995) TCGA-18-3409-01 16 30566770 30566770 G A ZNF764 Silent p.F324F 0.42 TCGA-18-3409-01 16 30581758 30581758 C T ZNF688 Splice_Site p.X104_splice 0.28 TCGA-18-3409-01 16 30594078 30594078 G A ZNF785 Missense_Mutation p.P341S 0.18 tolerated(0.09) probably_damaging(0.992) TCGA-18-3409-01 16 30749570 30749570 C T SRCAP Missense_Mutation p.R2737W 0.31 unknown(0) TCGA-18-3409-01 16 30779730 30779730 C T RNF40 Missense_Mutation p.P620S 0.31 tolerated(0.66) benign(0.001) TCGA-18-3409-01 16 30977242 30977242 C T SETD1A Silent p.F680F 0.34 TCGA-18-3409-01 16 31072431 31072431 G A ZNF668 Silent p.P629P 0.38 TCGA-18-3409-01 16 31072432 31072432 G A ZNF668 Missense_Mutation p.P629L 0.40 deleterious_low_confidence(0.02) probably_damaging(0.991) TCGA-18-3409-01 16 31150411 31150411 G A PRSS36 3'UTR 0.30 TCGA-18-3409-01 16 31336706 31336706 G A ITGAM Missense_Mutation p.R830Q 0.34 deleterious(0.01) benign(0.166) TCGA-18-3409-01 16 3140621 3140621 C T ZSCAN10 Missense_Mutation p.E217K 0.21 deleterious(0.01) benign(0.042) TCGA-18-3409-01 16 3140622 3140622 C T ZSCAN10 Silent p.K216K 0.22 TCGA-18-3409-01 16 31425842 31425842 C T ITGAD Silent p.F689F 0.25 TCGA-18-3409-01 16 3188510 3188510 C T ZNF213 Missense_Mutation p.P164L 0.59 tolerated(0.3) benign(0.006) TCGA-18-3409-01 16 3254963 3254963 C T OR1F1 Silent p.S239S 0.67 TCGA-18-3409-01 16 3366913 3366913 A G ZNF75A Silent p.A34A 0.13 TCGA-18-3409-01 16 34739689 34739689 G A RP11-80F22.15 RNA 0.45 TCGA-18-3409-01 16 3639381 3639381 G A SLX4 Missense_Mutation p.P1420S 0.27 tolerated(0.06) possibly_damaging(0.886) TCGA-18-3409-01 16 3658604 3658604 T C SLX4 Missense_Mutation p.K121R 0.30 deleterious(0.05) possibly_damaging(0.588) TCGA-18-3409-01 16 4410973 4410973 G A CORO7 Missense_Mutation p.R630W 0.51 deleterious(0.02) possibly_damaging(0.893) TCGA-18-3409-01 16 46943767 46943767 C T GPT2 Missense_Mutation p.R250W 0.15 deleterious(0) probably_damaging(0.989) TCGA-18-3409-01 16 47486699 47486699 G A ITFG1 Missense_Mutation p.P144S 0.22 tolerated(0.49) benign(0.013) TCGA-18-3409-01 16 48180299 48180299 C T ABCC12 Missense_Mutation p.D13N 0.33 tolerated(0.09) benign(0.077) TCGA-18-3409-01 16 4833651 4833651 C T SEPT12 Missense_Mutation p.R210K 0.23 tolerated(0.18) benign(0.113) TCGA-18-3409-01 16 4924219 4924219 C T UBN1 Missense_Mutation p.S603F 0.61 tolerated(0.17) possibly_damaging(0.553) TCGA-18-3409-01 16 49670785 49670785 G A ZNF423 Missense_Mutation p.R760C 0.21 deleterious(0) probably_damaging(0.991) TCGA-18-3409-01 16 49670786 49670786 G A ZNF423 Silent p.F759F 0.21 TCGA-18-3409-01 16 50258577 50258577 T C PAPD5 Missense_Mutation p.V449A 0.46 deleterious(0.03) benign(0.347) TCGA-18-3409-01 16 50388743 50388743 G A BRD7 Missense_Mutation p.P117S 0.23 tolerated(0.3) benign(0.189) TCGA-18-3409-01 16 50707814 50707814 C T SNX20 Missense_Mutation p.E152K 0.30 deleterious(0) probably_damaging(0.948) TCGA-18-3409-01 16 50744674 50744674 C T NOD2 Silent p.T284T 0.38 TCGA-18-3409-01 16 50810116 50810116 C T CYLD Missense_Mutation p.P317S 0.33 tolerated(0.1) benign(0.014) TCGA-18-3409-01 16 5112524 5112524 G A C16orf89 Missense_Mutation p.P87L 0.68 tolerated(0.11) benign(0.027) TCGA-18-3409-01 16 51172738 51172738 T C SALL1 Missense_Mutation p.K1132R 0.24 deleterious(0) probably_damaging(0.994) TCGA-18-3409-01 16 51173282 51173282 C T SALL1 Missense_Mutation p.A951T 0.33 tolerated(0.55) benign(0.001) TCGA-18-3409-01 16 51173945 51173945 C T SALL1 Missense_Mutation p.G730R 0.12 deleterious(0) probably_damaging(0.991) TCGA-18-3409-01 16 5134976 5134977 CC T FAM86A 3'UTR 0.43 TCGA-18-3409-01 16 52473848 52473848 G A TOX3 Silent p.I340I 0.26 TCGA-18-3409-01 16 53338389 53338389 C T CHD9 Silent p.S2157S 0.33 TCGA-18-3409-01 16 55362636 55362636 G A IRX6 Missense_Mutation p.R249Q 0.18 tolerated(0.28) benign(0.007) TCGA-18-3409-01 16 55364308 55364308 G A IRX6 3'UTR 0.35 TCGA-18-3409-01 16 55886869 55886869 G A CES5A Silent p.I428I 0.22 TCGA-18-3409-01 16 56396624 56396624 G A AMFR 3'UTR 0.29 TCGA-18-3409-01 16 56659692 56659692 C T MT1E 5'UTR 0.38 TCGA-18-3409-01 16 56912056 56912056 C T SLC12A3 Missense_Mutation p.A388V 0.38 tolerated(0.99) benign(0.017) TCGA-18-3409-01 16 56916389 56916389 C T SLC12A3 Missense_Mutation p.A550V 0.31 deleterious(0) probably_damaging(0.997) TCGA-18-3409-01 16 57207713 57207713 C T FAM192A Silent p.E18E 0.24 TCGA-18-3409-01 16 57732912 57732912 C T CCDC135 Silent p.H118H 0.28 TCGA-18-3409-01 16 58580634 58580634 G A CNOT1 Missense_Mutation p.P1257L 0.15 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 16 58621257 58621257 C T CNOT1 Missense_Mutation p.V124I 0.44 tolerated(0.19) benign(0.354) TCGA-18-3409-01 16 61687506 61687506 C T CDH8 3'UTR 0.33 TCGA-18-3409-01 16 61687532 61687532 C T CDH8 Missense_Mutation p.E794K 0.24 tolerated(0.06) benign(0.057) TCGA-18-3409-01 16 61760866 61760866 C T CDH8 Intron 0.46 TCGA-18-3409-01 16 61851579 61851579 G A CDH8 Missense_Mutation p.H361Y 0.22 tolerated(0.28) benign(0.002) TCGA-18-3409-01 16 62055387 62055387 C T CDH8 5'UTR 0.34 TCGA-18-3409-01 16 65016127 65016127 G A CDH11 Silent p.I359I 0.22 TCGA-18-3409-01 16 66759779 66759779 G A DYNC1LI2 Missense_Mutation p.P444S 0.36 tolerated(0.14) benign(0.39) TCGA-18-3409-01 16 66881131 66881131 G A CA7 Splice_Site p.X80_splice 0.36 TCGA-18-3409-01 16 67327714 67327714 C T KCTD19 Missense_Mutation p.E651K 0.38 tolerated(0.36) benign(0.008) TCGA-18-3409-01 16 67662408 67662408 C T CTCF Missense_Mutation p.P552S 0.33 deleterious(0) probably_damaging(1) TCGA-18-3409-01 16 67768871 67768871 G A RANBP10 Silent p.F222F 0.32 TCGA-18-3409-01 16 67943456 67943456 C T PSKH1 Silent p.V268V 0.24 TCGA-18-3409-01 16 68156241 68156241 C T NFATC3 Missense_Mutation p.P152L 0.25 deleterious(0) benign(0.342) TCGA-18-3409-01 16 68308694 68308694 C T SLC7A6 Missense_Mutation p.S22F 0.25 deleterious(0.03) benign(0.001) TCGA-18-3409-01 16 68338066 68338066 C T SLC7A6OS Missense_Mutation p.D181N 0.35 tolerated(0.12) benign(0.022) TCGA-18-3409-01 16 69202755 69202755 G A CIRH1A Missense_Mutation p.R659K 0.34 tolerated(0.97) benign(0) TCGA-18-3409-01 16 69385682 69385682 G A TMED6 5'UTR 0.41 TCGA-18-3409-01 16 70172834 70172834 C T PDPR Missense_Mutation p.P408L 0.13 deleterious(0) possibly_damaging(0.631) TCGA-18-3409-01 16 70400755 70400755 C T DDX19A Silent p.I337I 0.23 TCGA-18-3409-01 16 70531126 70531126 G A COG4 Silent p.F493F 0.22 TCGA-18-3409-01 16 70891610 70891610 A T HYDIN Missense_Mutation p.I4098N 0.16 possibly_damaging(0.891) TCGA-18-3409-01 16 70891611 70891611 T C HYDIN Missense_Mutation p.I4098V 0.14 benign(0.274) TCGA-18-3409-01 16 70917872 70917872 G A HYDIN Silent p.V3310V 0.42 TCGA-18-3409-01 16 71318220 71318220 G A CMTR2 Missense_Mutation p.S535F 0.43 tolerated(0.35) benign(0.004) TCGA-18-3409-01 16 71483440 71483440 G A ZNF23 Missense_Mutation p.S163F 0.16 deleterious(0.02) benign(0.003) TCGA-18-3409-01 16 71570631 71570631 G A CHST4 Missense_Mutation p.M17I 0.35 tolerated(0.48) benign(0.001) TCGA-18-3409-01 16 71601982 71601982 G A TAT 3'UTR 0.21 TCGA-18-3409-01 16 71602689 71602689 G A TAT Silent p.F383F 0.25 TCGA-18-3409-01 16 71668666 71668666 G A MARVELD3 Intron 0.21 TCGA-18-3409-01 16 72015969 72015969 G A PKD1L3 RNA 0.24 TCGA-18-3409-01 16 72016028 72016028 A G PKD1L3 RNA 0.42 TCGA-18-3409-01 16 72188302 72188302 G A PMFBP1 Silent p.S74S 0.37 TCGA-18-3409-01 16 72822391 72822391 C T ZFHX3 Missense_Mutation p.G3262R 0.44 unknown(0) TCGA-18-3409-01 16 72829629 72829629 C T ZFHX3 Missense_Mutation p.D2318N 0.37 probably_damaging(0.98) TCGA-18-3409-01 16 72991362 72991362 G A ZFHX3 Missense_Mutation p.P895S 0.42 benign(0.441) TCGA-18-3409-01 16 73127537 73127537 C T HCCAT5 RNA 0.27 TCGA-18-3409-01 16 74394547 74394547 G A RP11-252A24.2 RNA 0.13 TCGA-18-3409-01 16 76350260 76350260 G A CNTNAP4 Intron 0.32 TCGA-18-3409-01 16 76389314 76389314 G A CNTNAP4 Missense_Mutation p.G74E 0.16 tolerated(0.13) probably_damaging(0.989) TCGA-18-3409-01 16 76481942 76481942 C T CNTNAP4 Missense_Mutation p.S166F 0.23 tolerated(0.14) benign(0.008) TCGA-18-3409-01 16 76523671 76523671 C T CNTNAP4 Silent p.F584F 0.40 TCGA-18-3409-01 16 81058348 81058349 CT - CENPN Frame_Shift_Del p.L222Tfs*18 0.12 TCGA-18-3409-01 16 81241185 81241185 G A PKD1L2 Silent p.S272S 0.21 TCGA-18-3409-01 16 81249906 81249906 G A PKD1L2 Missense_Mutation p.S136F 0.29 tolerated(0.06) probably_damaging(0.957) TCGA-18-3409-01 16 81253771 81253771 C T PKD1L2 Missense_Mutation p.E69K 0.27 deleterious(0.01) probably_damaging(0.988) TCGA-18-3409-01 16 81279095 81279095 G A BCMO1 Nonsense_Mutation p.W27* 0.34 TCGA-18-3409-01 16 81303772 81303772 C T BCMO1 Silent p.I284I 0.37 TCGA-18-3409-01 16 81735267 81735267 C T CMIP Silent p.I586I 0.36 TCGA-18-3409-01 16 84188257 84188257 A T DNAAF1 Missense_Mutation p.K143I 0.16 deleterious(0) benign(0.209) TCGA-18-3409-01 16 84214690 84214690 G A TAF1C Missense_Mutation p.P449S 0.36 deleterious_low_confidence(0.02) benign(0.052) TCGA-18-3409-01 16 84872129 84872129 C T CRISPLD2 Missense_Mutation p.P10S 0.34 tolerated(0.26) benign(0.007) TCGA-18-3409-01 16 84906690 84906690 C T CRISPLD2 Silent p.F358F 0.32 TCGA-18-3409-01 16 85100745 85100745 C T KIAA0513 Missense_Mutation p.P23L 0.27 deleterious_low_confidence(0.02) benign(0.158) TCGA-18-3409-01 16 85946809 85946809 C T IRF8 Missense_Mutation p.L174F 0.35 tolerated(0.76) benign(0.005) TCGA-18-3409-01 16 87443724 87443724 G A ZCCHC14 3'UTR 0.41 TCGA-18-3409-01 16 88893133 88893133 G A GALNS Silent p.L372L 0.45 TCGA-18-3409-01 16 89294367 89294367 G A ZNF778 Silent p.E529E 0.18 TCGA-18-3409-01 16 89294368 89294368 G A ZNF778 Missense_Mutation p.E530K 0.20 deleterious(0.03) possibly_damaging(0.702) TCGA-18-3409-01 16 89598911 89598911 C T SPG7 Silent p.A397A 0.19 TCGA-18-3409-01 16 89603290 89603290 C T SPG7 Intron 0.27 TCGA-18-3409-01 16 89657454 89657454 G A CPNE7 Missense_Mutation p.D461N 0.30 deleterious(0) probably_damaging(0.997) TCGA-18-3409-01 16 89756978 89756978 C T CDK10 Nonsense_Mutation p.Q60* 0.43 TCGA-18-3409-01 16 90002183 90002183 G A TUBB3 Missense_Mutation p.E442K 0.41 tolerated_low_confidence(0.28) unknown(0) TCGA-18-3409-01 16 90103747 90103747 G A GAS8 Silent p.E288E 0.45 TCGA-18-3409-01 16 9858202 9858202 G A GRIN2A Missense_Mutation p.R1067W 0.56 deleterious(0) probably_damaging(1) TCGA-18-3409-01 16 9858517 9858517 C T GRIN2A Missense_Mutation p.E962K 0.32 deleterious(0.02) possibly_damaging(0.642) TCGA-18-3409-01 16 9934562 9934562 C T GRIN2A Silent p.T531T 0.59 TCGA-18-3409-01 17 10227347 10227347 C T MYH13 Missense_Mutation p.E976K 0.41 deleterious(0) probably_damaging(0.98) TCGA-18-3409-01 17 10235428 10235428 G A MYH13 Silent p.F762F 0.48 TCGA-18-3409-01 17 10247140 10247140 G A MYH13 Missense_Mutation p.S624F 0.50 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 17 10261144 10261144 C T MYH13 Missense_Mutation p.G216R 0.18 deleterious(0) probably_damaging(1) TCGA-18-3409-01 17 10304884 10304884 C T MYH8 Silent p.K969K 0.24 TCGA-18-3409-01 17 10351386 10351386 C T MYH4 Missense_Mutation p.V1572M 0.38 tolerated(0.13) benign(0.271) TCGA-18-3409-01 17 10399723 10399723 G A MYH1 Silent p.S1600S 0.35 TCGA-18-3409-01 17 10405195 10405195 G A MYH1 Missense_Mutation p.R1049W 0.57 deleterious(0) possibly_damaging(0.577) TCGA-18-3409-01 17 10427837 10427837 G A MYH2 Silent p.I1707I 0.35 TCGA-18-3409-01 17 10429160 10429160 C T MYH2 Silent p.E1407E 0.15 TCGA-18-3409-01 17 10438597 10438597 G A MYH2 Missense_Mutation p.P687L 0.27 deleterious(0) probably_damaging(0.931) TCGA-18-3409-01 17 10443353 10443353 C T MYH2 Missense_Mutation p.E347K 0.22 deleterious(0) benign(0.419) TCGA-18-3409-01 17 10447437 10447437 C T MYH2 Silent p.E171E 0.27 TCGA-18-3409-01 17 10447438 10447438 T C MYH2 Missense_Mutation p.E171G 0.26 deleterious(0) probably_damaging(0.909) TCGA-18-3409-01 17 11572550 11572550 C T DNAH9 Silent p.S967S 0.23 TCGA-18-3409-01 17 11572867 11572867 C T DNAH9 Missense_Mutation p.P1037S 0.28 benign(0.004) TCGA-18-3409-01 17 11648319 11648319 G A DNAH9 Missense_Mutation p.R2106K 0.20 benign(0) TCGA-18-3409-01 17 11809111 11809111 G A DNAH9 Missense_Mutation p.D3912N 0.33 benign(0.445) TCGA-18-3409-01 17 12655844 12655844 G A MYOCD Silent p.P413P 0.27 TCGA-18-3409-01 17 12656034 12656034 G A MYOCD Missense_Mutation p.D477N 0.32 deleterious(0.01) possibly_damaging(0.836) TCGA-18-3409-01 17 13399983 13399983 G A HS3ST3A1 Missense_Mutation p.S251L 0.16 deleterious(0) probably_damaging(0.994) TCGA-18-3409-01 17 1538884 1538884 G A SCARF1 Missense_Mutation p.S554L 0.73 tolerated(0.33) benign(0.002) TCGA-18-3409-01 17 1543015 1543015 G C SCARF1 Silent p.A387A 0.58 TCGA-18-3409-01 17 1543206 1543206 C T SCARF1 Missense_Mutation p.S380N 0.33 deleterious(0.02) benign(0.077) TCGA-18-3409-01 17 1582317 1582317 G A PRPF8 Silent p.T531T 0.21 TCGA-18-3409-01 17 16024534 16024534 C T NCOR1 Missense_Mutation p.E562K 0.31 benign(0.278) TCGA-18-3409-01 17 18194300 18194300 G A TOP3A Silent p.F441F 0.26 TCGA-18-3409-01 17 18219614 18219614 G A SMCR8 Missense_Mutation p.E171K 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-18-3409-01 17 18257060 18257060 G A SHMT1 Silent p.F56F 0.48 TCGA-18-3409-01 17 18647829 18647829 G A FBXW10 Missense_Mutation p.R91Q 0.22 tolerated(0.11) possibly_damaging(0.758) TCGA-18-3409-01 17 19452969 19452969 G A SLC47A1 Silent p.T159T 0.17 TCGA-18-3409-01 17 21208395 21208395 G A MAP2K3 Silent p.K243K 0.12 TCGA-18-3409-01 17 21217475 21217475 C T MAP2K3 Missense_Mutation p.T326I 0.13 tolerated(0.22) benign(0.004) TCGA-18-3409-01 17 21731224 21731224 G A UBBP4 Intron 0.37 TCGA-18-3409-01 17 26107882 26107882 G A NOS2 Silent p.V305V 0.17 TCGA-18-3409-01 17 26731817 26731817 C T SLC46A1 Missense_Mutation p.D300N 0.33 tolerated(0.57) probably_damaging(0.96) TCGA-18-3409-01 17 26731818 26731818 C T SLC46A1 Nonsense_Mutation p.W299* 0.33 TCGA-18-3409-01 17 26902293 26902293 G A ALDOC Silent p.L58L 0.45 TCGA-18-3409-01 17 27016513 27016513 C T SUPT6H Silent p.I1092I 0.49 TCGA-18-3409-01 17 27291092 27291092 C T SEZ6 Silent p.G376G 0.40 TCGA-18-3409-01 17 27371896 27371896 G A PIPOX Missense_Mutation p.R45Q 0.31 deleterious(0) possibly_damaging(0.824) TCGA-18-3409-01 17 27822697 27822697 C T TAOK1 Silent p.F317F 0.43 TCGA-18-3409-01 17 27822698 27822698 C T TAOK1 Nonsense_Mutation p.Q318* 0.42 TCGA-18-3409-01 17 29483114 29483114 C T NF1 Silent p.L58L 0.20 TCGA-18-3409-01 17 2966538 2966538 G A OR1D5 Missense_Mutation p.R122C 0.17 deleterious(0.01) benign(0.178) TCGA-18-3409-01 17 2996075 2996075 G A OR1D2 Silent p.F72F 0.35 TCGA-18-3409-01 17 30678826 30678826 T G ZNF207 Missense_Mutation p.D21E 0.10 tolerated(0.18) benign(0.046) TCGA-18-3409-01 17 31324761 31324761 G A SPACA3 Missense_Mutation p.D205N 0.10 tolerated(0.07) probably_damaging(0.947) TCGA-18-3409-01 17 31355373 31355373 G A ASIC2 Missense_Mutation p.S342F 0.41 deleterious(0.03) benign(0.015) TCGA-18-3409-01 17 32483157 32483157 G A ASIC2 Missense_Mutation p.S132F 0.22 deleterious(0.04) benign(0.005) TCGA-18-3409-01 17 33521009 33521009 G A SLC35G3 Silent p.F106F 0.26 TCGA-18-3409-01 17 34105923 34105923 T G MMP28 Missense_Mutation p.K116N 0.48 deleterious(0.01) possibly_damaging(0.462) TCGA-18-3409-01 17 34190509 34190509 G A C17orf66 Silent p.L208L 0.29 TCGA-18-3409-01 17 34195846 34195846 G A C17orf66 5'UTR 0.50 TCGA-18-3409-01 17 34539852 34539852 G A CCL4L1 Intron 0.46 TCGA-18-3409-01 17 36288238 36288238 C A TBC1D3F Silent p.G108G 0.18 TCGA-18-3409-01 17 36484158 36484158 C T GPR179 Missense_Mutation p.G1765E 0.17 tolerated(1) benign(0.002) TCGA-18-3409-01 17 37687305 37687305 C T CDK12 Silent p.L1403L 0.36 TCGA-18-3409-01 17 38285676 38285676 C T MSL1 Missense_Mutation p.R128W 0.27 deleterious(0) possibly_damaging(0.721) TCGA-18-3409-01 17 38318975 38318975 C T CASC3 Intron 0.38 TCGA-18-3409-01 17 38348886 38348886 G A RAPGEFL1 Missense_Mutation p.R356Q 0.37 deleterious(0) possibly_damaging(0.518) TCGA-18-3409-01 17 38421050 38421050 C T WIPF2 Missense_Mutation p.P208S 0.38 deleterious(0) probably_damaging(0.987) TCGA-18-3409-01 17 3845967 3845967 G A ATP2A3 Missense_Mutation p.S493F 0.38 deleterious(0) probably_damaging(1) TCGA-18-3409-01 17 3846781 3846781 C T ATP2A3 Silent p.T441T 0.27 TCGA-18-3409-01 17 39092725 39092725 G A KRT23 Missense_Mutation p.S44F 0.52 deleterious(0.01) probably_damaging(0.999) TCGA-18-3409-01 17 39190490 39190490 C A KRTAP1-3 3'UTR 0.40 TCGA-18-3409-01 17 39316984 39316984 G A KRTAP4-4 5'Flank 0.30 TCGA-18-3409-01 17 3966127 3966127 G A ZZEF1 Silent p.S1601S 0.21 TCGA-18-3409-01 17 39672489 39672489 G A KRT15 Missense_Mutation p.A256V 0.40 tolerated(0.13) benign(0.023) TCGA-18-3409-01 17 39739615 39739615 C T KRT14 Silent p.E382E 0.18 TCGA-18-3409-01 17 39881284 39881284 G A HAP1 Missense_Mutation p.P510L 0.23 deleterious_low_confidence(0.05) possibly_damaging(0.851) TCGA-18-3409-01 17 40174625 40174625 G A NKIRAS2 Silent p.K101K 0.32 TCGA-18-3409-01 17 40453402 40453402 C T STAT5A Missense_Mutation p.P367S 0.29 tolerated(0.05) probably_damaging(0.962) TCGA-18-3409-01 17 40714916 40714916 C T COASY Silent p.T121T 0.41 TCGA-18-3409-01 17 40723655 40723655 G A MLX 3'UTR 0.31 TCGA-18-3409-01 17 40996818 40996818 C T AOC2 Silent p.L59L 0.28 TCGA-18-3409-01 17 41053082 41053082 G T G6PC Missense_Mutation p.W63C 0.09 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 17 41143839 41143839 C T RUNDC1 3'UTR 0.40 TCGA-18-3409-01 17 41245974 41245974 A G BRCA1 Missense_Mutation p.V525A 0.15 deleterious(0.01) possibly_damaging(0.842) TCGA-18-3409-01 17 42466757 42466757 C T ITGA2B Missense_Mutation p.A29T 0.22 tolerated(0.27) benign(0.001) TCGA-18-3409-01 17 42818751 42818751 C T DBF4B Missense_Mutation p.S254F 0.42 deleterious(0.03) benign(0.282) TCGA-18-3409-01 17 42931686 42931686 G A EFTUD2 Silent p.I766I 0.26 TCGA-18-3409-01 17 43003598 43003598 G A KIF18B Intron 0.18 TCGA-18-3409-01 17 45890761 45890761 G A OSBPL7 Silent p.I536I 0.31 TCGA-18-3409-01 17 46058875 46058875 C T CDK5RAP3 3'UTR 0.25 TCGA-18-3409-01 17 46133781 46133781 G A NFE2L1 Missense_Mutation p.D182N 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-18-3409-01 17 46607016 46607016 G T HOXB1 Silent p.R267R 0.41 TCGA-18-3409-01 17 46608197 46608198 - GCTGTGGGC HOXB1 In_Frame_Ins p.H25_A27dup 0.23 TCGA-18-3409-01 17 46799691 46799691 G A PRAC1 Missense_Mutation p.L22F 0.35 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-18-3409-01 17 46925694 46925694 G T CALCOCO2 Silent p.L122L 0.42 TCGA-18-3409-01 17 4722448 4722448 C T PLD2 Missense_Mutation p.P748L 0.19 tolerated(1) benign(0.009) TCGA-18-3409-01 17 4722449 4722449 C T PLD2 Silent p.P748P 0.23 TCGA-18-3409-01 17 47874115 47874115 C T KAT7 Missense_Mutation p.S56F 0.20 deleterious_low_confidence(0.01) benign(0.086) TCGA-18-3409-01 17 4799981 4799981 C T MINK1 Missense_Mutation p.S1263F 0.39 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 17 4805141 4805141 C T C17orf107 3'UTR 0.38 TCGA-18-3409-01 17 4805916 4805916 C T CHRNE Silent p.L63L 0.34 TCGA-18-3409-01 17 48244988 48244988 G A SGCA Missense_Mutation p.G68E 0.38 deleterious(0.01) possibly_damaging(0.904) TCGA-18-3409-01 17 48266110 48266110 C T COL1A1 Missense_Mutation p.G1031D 0.20 unknown(0) TCGA-18-3409-01 17 48269882 48269882 G A COL1A1 Missense_Mutation p.P646L 0.58 unknown(0) TCGA-18-3409-01 17 48270367 48270367 G A COL1A1 Silent p.P603P 0.22 TCGA-18-3409-01 17 4863819 4863819 G A SPAG7 Silent p.F59F 0.39 TCGA-18-3409-01 17 48695421 48695421 G A CACNA1G Missense_Mutation p.G1747R 0.19 deleterious(0) probably_damaging(1) TCGA-18-3409-01 17 48917207 48917207 C T WFIKKN2 Silent p.P186P 0.30 TCGA-18-3409-01 17 4906956 4906956 C T KIF1C Missense_Mutation p.S257F 0.88 deleterious(0) probably_damaging(0.926) TCGA-18-3409-01 17 4906957 4906957 C T KIF1C Silent p.S257S 0.82 TCGA-18-3409-01 17 49708800 49708800 C G CA10 3'UTR 0.35 TCGA-18-3409-01 17 49708847 49708847 G T CA10 3'UTR 0.27 TCGA-18-3409-01 17 5084445 5084445 G A ZNF594 3'UTR 0.18 TCGA-18-3409-01 17 5335940 5335940 C T RPAIN 3'Flank 0.57 TCGA-18-3409-01 17 5377937 5377937 G A DERL2 3'UTR 0.40 TCGA-18-3409-01 17 54534322 54534322 G A ANKFN1 Splice_Site p.X439_splice 0.20 TCGA-18-3409-01 17 56271340 56271340 G A EPX Missense_Mutation p.G161R 0.22 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 17 56285516 56285516 G A MKS1 Missense_Mutation p.S372F 0.39 deleterious(0.01) probably_damaging(0.926) TCGA-18-3409-01 17 56350926 56350926 G A MPO Silent p.I490I 0.23 TCGA-18-3409-01 17 56649316 56649316 G A TEX14 Missense_Mutation p.S1274F 0.34 deleterious(0) benign(0.254) TCGA-18-3409-01 17 56663264 56663264 C T TEX14 Missense_Mutation p.E996K 0.13 tolerated(0.45) benign(0.008) TCGA-18-3409-01 17 57033100 57033100 G A PPM1E Silent p.K185K 0.20 TCGA-18-3409-01 17 58332618 58332618 A T USP32 Missense_Mutation p.M331K 0.19 tolerated(0.92) benign(0) TCGA-18-3409-01 17 59667864 59667864 G A NACA2 3'UTR 0.35 TCGA-18-3409-01 17 59885938 59885938 C T BRIP1 Missense_Mutation p.G270R 0.27 tolerated(0.19) benign(0.027) TCGA-18-3409-01 17 59944991 59944991 G A INTS2 Missense_Mutation p.P1181L 0.44 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-18-3409-01 17 60349343 60349343 G A TBC1D3P2 RNA 0.35 TCGA-18-3409-01 17 60753195 60753195 C T MRC2 Silent p.D538D 0.17 TCGA-18-3409-01 17 60753196 60753196 C T MRC2 Nonsense_Mutation p.Q539* 0.16 TCGA-18-3409-01 17 61345178 61345178 C T TANC2 Missense_Mutation p.S294F 0.31 deleterious(0.01) possibly_damaging(0.845) TCGA-18-3409-01 17 62121422 62121422 C T ERN1 Missense_Mutation p.E954K 0.20 deleterious(0.02) possibly_damaging(0.554) TCGA-18-3409-01 17 62137873 62137873 C T ERN1 Missense_Mutation p.E388K 0.26 tolerated(0.17) benign(0.155) TCGA-18-3409-01 17 63193340 63193340 C T RGS9 Silent p.F319F 0.17 TCGA-18-3409-01 17 6329102 6329102 C T AIPL1 Nonsense_Mutation p.W278* 0.59 TCGA-18-3409-01 17 63822421 63822421 C T CEP112 Intron 0.41 TCGA-18-3409-01 17 63923748 63923748 C T CEP112 Silent p.K644K 0.44 TCGA-18-3409-01 17 64210728 64210728 G A APOH Silent p.Y275Y 0.18 TCGA-18-3409-01 17 65889712 65889712 G A BPTF Missense_Mutation p.G761E 0.24 probably_damaging(0.961) TCGA-18-3409-01 17 6589315 6589315 C T SLC13A5 3'UTR 0.31 TCGA-18-3409-01 17 66420657 66420657 T A WIPI1 Intron 0.43 TCGA-18-3409-01 17 67293357 67293357 C T ABCA5 Missense_Mutation p.E471K 0.17 deleterious(0.01) possibly_damaging(0.858) TCGA-18-3409-01 17 67515456 67515456 G T MAP2K6 Silent p.R83R 0.17 TCGA-18-3409-01 17 71394475 71394475 G A SDK2 Missense_Mutation p.P1063S 0.46 deleterious(0) probably_damaging(0.994) TCGA-18-3409-01 17 7158182 7158182 C T ELP5 Intron 0.22 TCGA-18-3409-01 17 7186595 7186595 G A SLC2A4 Missense_Mutation p.G22E 0.39 tolerated(0.19) benign(0.049) TCGA-18-3409-01 17 72245532 72245532 C T TTYH2 Silent p.F308F 0.38 TCGA-18-3409-01 17 72249255 72249255 C T TTYH2 Missense_Mutation p.P432L 0.36 deleterious(0.02) probably_damaging(0.986) TCGA-18-3409-01 17 72346967 72346967 G A AC103809.2 Missense_Mutation p.S115F 0.25 possibly_damaging(0.692) TCGA-18-3409-01 17 72351329 72351329 G A KIF19 Missense_Mutation p.D959N 0.46 tolerated(0.06) benign(0.001) TCGA-18-3409-01 17 72537600 72537600 G A CD300C 3'UTR 0.38 TCGA-18-3409-01 17 72541058 72541058 G A CD300C Silent p.T30T 0.26 TCGA-18-3409-01 17 7256759 7256759 C T KCTD11 Silent p.L166L 0.28 TCGA-18-3409-01 17 72613441 72613441 C T CD300E Silent p.E68E 0.31 TCGA-18-3409-01 17 72791233 72791233 C T TMEM104 Silent p.S170S 0.32 TCGA-18-3409-01 17 72832361 72832361 C T TMEM104 Silent p.F342F 0.23 TCGA-18-3409-01 17 72888659 72888659 G A FADS6 Silent p.F116F 0.17 TCGA-18-3409-01 17 72929487 72929487 C T OTOP2 Silent p.A512A 0.30 TCGA-18-3409-01 17 7324589 7324589 G A SPEM1 Missense_Mutation p.G199S 0.24 tolerated(0.24) probably_damaging(0.994) TCGA-18-3409-01 17 73870748 73870748 G A TRIM47 Missense_Mutation p.S578F 0.54 deleterious(0) possibly_damaging(0.819) TCGA-18-3409-01 17 74387585 74387585 G A UBE2O Silent p.I1106I 0.28 TCGA-18-3409-01 17 74621408 74621408 C T ST6GALNAC1 3'UTR 0.27 TCGA-18-3409-01 17 74622468 74622468 G A ST6GALNAC1 Missense_Mutation p.R440C 0.17 probably_damaging(0.977) TCGA-18-3409-01 17 74712645 74712645 G A JMJD6 3'UTR 0.36 TCGA-18-3409-01 17 7476179 7476179 C T EIF4A1 Missense_Mutation p.S7F 0.35 deleterious_low_confidence(0.01) benign(0.047) TCGA-18-3409-01 17 74928785 74928785 G A MGAT5B Silent p.E461E 0.38 TCGA-18-3409-01 17 7578200 7578221 CCACACTATGTCGAAAAGTGTT - TP53 Frame_Shift_Del p.N210Wfs*30 0.29 TCGA-18-3409-01 17 7578222 7578222 T A TP53 Missense_Mutation p.R209S 0.33 tolerated(0.71) benign(0.01) TCGA-18-3409-01 17 76187105 76187105 G A AFMID Missense_Mutation p.E40K 0.15 tolerated(0.06) benign(0.082) TCGA-18-3409-01 17 76435281 76435281 G A DNAH17 Missense_Mutation p.T3885I 0.45 benign(0.328) TCGA-18-3409-01 17 76455988 76455988 C T DNAH17 Silent p.K3163K 0.19 TCGA-18-3409-01 17 76547629 76547629 G A DNAH17 Silent p.S793S 0.17 TCGA-18-3409-01 17 76557905 76557905 G A DNAH17 Missense_Mutation p.P576L 0.14 benign(0.044) TCGA-18-3409-01 17 76565307 76565307 G A DNAH17 Missense_Mutation p.P409S 0.22 benign(0.023) TCGA-18-3409-01 17 76565308 76565308 G A DNAH17 Silent p.F408F 0.20 TCGA-18-3409-01 17 7678246 7678246 A C DNAH2 Silent p.P1557P 0.31 TCGA-18-3409-01 17 76818113 76818113 G A USP36 Intron 0.46 TCGA-18-3409-01 17 76831522 76831522 G A USP36 Silent p.F105F 0.50 TCGA-18-3409-01 17 7705318 7705318 C T DNAH2 Silent p.L2985L 0.38 TCGA-18-3409-01 17 77078205 77078205 C T ENGASE Intron 0.18 TCGA-18-3409-01 17 7749997 7749997 C T KDM6B Missense_Mutation p.P217L 0.29 unknown(0) TCGA-18-3409-01 17 77755583 77755583 C T CBX2 Missense_Mutation p.R91W 0.35 deleterious(0.03) benign(0.022) TCGA-18-3409-01 17 77924299 77924299 C T TBC1D16 Missense_Mutation p.E390K 0.25 deleterious(0) possibly_damaging(0.766) TCGA-18-3409-01 17 78282825 78282825 G A RNF213 Missense_Mutation p.E837K 0.22 benign(0.37) TCGA-18-3409-01 17 78313903 78313903 C T RNF213 Silent p.F1912F 0.62 TCGA-18-3409-01 17 78969519 78969519 G A CHMP6 Silent p.G103G 0.34 TCGA-18-3409-01 17 79263498 79263498 G A SLC38A10 Silent p.A70A 0.42 TCGA-18-3409-01 17 7945806 7945806 C T ALOX15B Missense_Mutation p.S190F 0.20 tolerated(0.44) probably_damaging(0.957) TCGA-18-3409-01 17 79478502 79478502 G A ACTG1 Missense_Mutation p.P172S 0.41 deleterious_low_confidence(0.01) probably_damaging(0.985) TCGA-18-3409-01 17 79517271 79517271 T A C17orf70 Intron 0.46 TCGA-18-3409-01 17 79596825 79596825 G A NPLOC4 Missense_Mutation p.R8C 0.21 deleterious(0) probably_damaging(1) TCGA-18-3409-01 17 79684805 79684805 C T SLC25A10 Missense_Mutation p.P216S 0.56 tolerated_low_confidence(0.67) benign(0.001) TCGA-18-3409-01 17 79890959 79890959 C T PYCR1 3'UTR 0.54 TCGA-18-3409-01 17 79914614 79914614 C T NOTUM Silent p.G300G 0.29 TCGA-18-3409-01 17 80045900 80045900 G A FASN Silent p.S932S 0.32 TCGA-18-3409-01 17 8053942 8053942 G A PER1 Missense_Mutation p.P28L 0.39 deleterious(0.04) benign(0.012) TCGA-18-3409-01 17 8054084 8054084 G A PER1 5'UTR 0.55 TCGA-18-3409-01 17 80615683 80615683 G A RAB40B 3'UTR 0.42 TCGA-18-3409-01 17 80788605 80788605 C T ZNF750 Missense_Mutation p.E529K 0.23 tolerated(0.74) benign(0.001) TCGA-18-3409-01 17 80789461 80789461 C T ZNF750 Silent p.P290P 0.40 TCGA-18-3409-01 17 80828254 80828254 G A TBCD Silent p.S491S 0.52 TCGA-18-3409-01 17 8138499 8138499 C T CTC1 Silent p.Q437Q 0.76 TCGA-18-3409-01 17 8700739 8700739 G A MFSD6L Missense_Mutation p.S567F 0.28 deleterious(0) probably_damaging(0.977) TCGA-18-3409-01 17 8785136 8785136 G A PIK3R5 Silent p.L756L 0.33 TCGA-18-3409-01 17 9538775 9538775 G A WDR16 Silent p.K458K 0.39 TCGA-18-3409-01 18 10680351 10680351 C T PIEZO2 Silent p.L2486L 0.22 TCGA-18-3409-01 18 12506584 12506584 C T SPIRE1 Silent p.K288K 0.34 TCGA-18-3409-01 18 12673282 12673282 A C CEP76 3'UTR 0.22 TCGA-18-3409-01 18 12982531 12982531 C T SEH1L Missense_Mutation p.S259F 0.16 deleterious(0.01) benign(0.393) TCGA-18-3409-01 18 13621131 13621131 C T LDLRAD4 Missense_Mutation p.A66V 0.33 tolerated(1) benign(0.012) TCGA-18-3409-01 18 13737115 13737115 T C RNMT Silent p.I220I 0.44 TCGA-18-3409-01 18 13884700 13884700 G A MC2R Missense_Mutation p.P273L 0.29 deleterious(0) probably_damaging(1) TCGA-18-3409-01 18 14478320 14478320 C T CXADRP3 RNA 0.36 TCGA-18-3409-01 18 14542840 14542840 G A POTEC Silent p.C102C 0.18 TCGA-18-3409-01 18 18571194 18571194 C T ROCK1 Missense_Mutation p.A696T 0.17 deleterious(0.03) probably_damaging(0.984) TCGA-18-3409-01 18 19020297 19020297 C T GREB1L Silent p.P339P 0.38 TCGA-18-3409-01 18 19780731 19780731 C T GATA6 Missense_Mutation p.A578V 0.36 tolerated(0.05) possibly_damaging(0.551) TCGA-18-3409-01 18 19780732 19780732 C T GATA6 Silent p.A578A 0.33 TCGA-18-3409-01 18 22023101 22023101 G A IMPACT Silent p.V193V 0.30 TCGA-18-3409-01 18 22023102 22023102 G A IMPACT Missense_Mutation p.V194I 0.29 tolerated(0.09) possibly_damaging(0.568) TCGA-18-3409-01 18 22806088 22806088 C T ZNF521 Silent p.G598G 0.22 TCGA-18-3409-01 18 22806243 22806243 G A ZNF521 Missense_Mutation p.P547S 0.25 tolerated(0.22) probably_damaging(0.954) TCGA-18-3409-01 18 22807069 22807069 T A ZNF521 Missense_Mutation p.E271D 0.20 tolerated(0.31) benign(0.015) TCGA-18-3409-01 18 24436323 24436323 C T AQP4 Missense_Mutation p.G275E 0.31 tolerated(0.12) benign(0.004) TCGA-18-3409-01 18 25568577 25568577 C T CDH2 Missense_Mutation p.G551E 0.35 deleterious(0) probably_damaging(1) TCGA-18-3409-01 18 2892287 2892287 G A EMILIN2 Missense_Mutation p.G721E 0.44 tolerated(0.09) benign(0.059) TCGA-18-3409-01 18 28993606 28993606 A T DSG4 3'UTR 0.29 TCGA-18-3409-01 18 29178598 29178598 C T TTR Missense_Mutation p.S135F 0.29 deleterious(0.04) possibly_damaging(0.8) TCGA-18-3409-01 18 29178599 29178599 C T TTR Silent p.S135S 0.29 TCGA-18-3409-01 18 29206995 29206995 C T B4GALT6 Missense_Mutation p.G289E 0.23 deleterious(0) probably_damaging(1) TCGA-18-3409-01 18 29850233 29850233 C T GAREM Silent p.Q560Q 0.28 TCGA-18-3409-01 18 30275436 30275436 C T KLHL14 Nonsense_Mutation p.W383* 0.32 TCGA-18-3409-01 18 30795606 30795606 C T CCDC178 Missense_Mutation p.M662I 0.24 tolerated(0.89) benign(0) TCGA-18-3409-01 18 30873188 30873188 C T CCDC178 Missense_Mutation p.E371K 0.26 tolerated(0.66) benign(0.108) TCGA-18-3409-01 18 3155065 3155065 C T MYOM1 Missense_Mutation p.G508E 0.36 deleterious(0.02) probably_damaging(0.96) TCGA-18-3409-01 18 3215053 3215053 C T MYOM1 Missense_Mutation p.E57K 0.24 tolerated_low_confidence(0.13) benign(0.001) TCGA-18-3409-01 18 3456442 3456442 G A TGIF1 Missense_Mutation p.R165K 0.33 tolerated(0.13) probably_damaging(0.992) TCGA-18-3409-01 18 346394 346394 A G COLEC12 Silent p.L410L 0.25 TCGA-18-3409-01 18 40850610 40850610 G A SYT4 Missense_Mutation p.P325L 0.20 deleterious(0) probably_damaging(0.982) TCGA-18-3409-01 18 40854007 40854007 C T SYT4 Silent p.G129G 0.24 TCGA-18-3409-01 18 40854008 40854008 C T SYT4 Missense_Mutation p.G129E 0.24 tolerated(0.42) benign(0) TCGA-18-3409-01 18 44027630 44027630 C T RNF165 Missense_Mutation p.P197L 0.31 deleterious(0) possibly_damaging(0.628) TCGA-18-3409-01 18 47404178 47404178 G A MYO5B Silent p.S1117S 0.34 TCGA-18-3409-01 18 48241502 48241502 C T MAPK4 Silent p.L200L 0.16 TCGA-18-3409-01 18 50432545 50432545 C T DCC Missense_Mutation p.P182S 0.32 tolerated(0.12) benign(0.004) TCGA-18-3409-01 18 50432550 50432550 C T DCC Silent p.I183I 0.40 TCGA-18-3409-01 18 52546600 52546600 G A RAB27B Missense_Mutation p.V52I 0.36 tolerated(0.42) benign(0.001) TCGA-18-3409-01 18 54424311 54424311 C T WDR7 Silent p.P829P 0.19 TCGA-18-3409-01 18 55024414 55024414 C T ST8SIA3 Silent p.F191F 0.31 TCGA-18-3409-01 18 55024568 55024568 C T ST8SIA3 Missense_Mutation p.L243F 0.27 benign(0.234) TCGA-18-3409-01 18 55992303 55992303 C T NEDD4L Missense_Mutation p.P197S 0.23 tolerated(0.13) benign(0.192) TCGA-18-3409-01 18 56203022 56203022 C T ALPK2 Missense_Mutation p.R1466K 0.29 tolerated(0.66) benign(0.036) TCGA-18-3409-01 18 58038584 58038584 T C MC4R Silent p.%3D 0.34 TCGA-18-3409-01 18 59947641 59947641 C T KIAA1468 Missense_Mutation p.P1006S 0.11 deleterious(0) probably_damaging(0.995) TCGA-18-3409-01 18 61233932 61233932 C T SERPINB12 Silent p.F302F 0.40 TCGA-18-3409-01 18 61387384 61387384 A G SERPINB11 Missense_Mutation p.S205G 0.38 tolerated(0.05) benign(0.014) TCGA-18-3409-01 18 61570516 61570516 T A SERPINB2 Missense_Mutation p.F409I 0.36 deleterious(0.02) benign(0.237) TCGA-18-3409-01 18 63511245 63511245 G A CDH7 Silent p.G393G 0.28 TCGA-18-3409-01 18 63547737 63547737 C T CDH7 Silent p.D655D 0.34 TCGA-18-3409-01 18 63548017 63548017 G A CDH7 Missense_Mutation p.D749N 0.39 tolerated(0.18) benign(0.023) TCGA-18-3409-01 18 64211222 64211222 C T CDH19 Silent p.R400R 0.24 TCGA-18-3409-01 18 67562970 67562970 C T CD226 Missense_Mutation p.E232K 0.29 tolerated(0.5) benign(0.343) TCGA-18-3409-01 18 67993203 67993215 TGAGCACTCAAAT GG SOCS6 Frame_Shift_Del p.I433Mfs*3 0.48 TCGA-18-3409-01 18 6859867 6859867 A T ARHGAP28 Missense_Mutation p.S74C 0.28 tolerated(0.05) possibly_damaging(0.497) TCGA-18-3409-01 18 6873493 6873493 C T ARHGAP28 Missense_Mutation p.S188F 0.29 deleterious(0.01) benign(0.265) TCGA-18-3409-01 18 70417313 70417313 C T NETO1 Missense_Mutation p.D509N 0.40 deleterious_low_confidence(0.04) benign(0.107) TCGA-18-3409-01 18 70532042 70532042 C T NETO1 Splice_Site p.X74_splice 0.25 TCGA-18-3409-01 18 7231207 7231207 G A LRRC30 Missense_Mutation p.R24K 0.39 tolerated(0.81) benign(0.075) TCGA-18-3409-01 18 74091512 74091512 G A ZNF516 Missense_Mutation p.P853L 0.33 deleterious(0) probably_damaging(0.997) TCGA-18-3409-01 18 74700285 74700285 C T RP11-862L9.3 3'Flank 0.40 TCGA-18-3409-01 18 74728762 74728762 A C MBP 3'UTR 0.26 TCGA-18-3409-01 18 76754623 76754623 G A SALL3 Missense_Mutation p.D878N 0.34 deleterious(0.02) possibly_damaging(0.459) TCGA-18-3409-01 18 76870492 76870492 C T ATP9B Missense_Mutation p.T144I 0.45 deleterious(0) probably_damaging(0.973) TCGA-18-3409-01 18 77211800 77211800 C T NFATC1 Silent p.F616F 0.30 TCGA-18-3409-01 18 77805900 77805900 C T RBFA Silent p.L259L 0.32 TCGA-18-3409-01 18 8069870 8069870 C T PTPRM Missense_Mutation p.S440L 0.28 tolerated(0.06) benign(0.001) TCGA-18-3409-01 18 8380381 8380381 C T PTPRM Missense_Mutation p.H1292Y 0.52 deleterious(0.01) possibly_damaging(0.767) TCGA-18-3409-01 18 9550286 9550286 G A PPP4R1 Missense_Mutation p.S801F 0.33 deleterious(0) benign(0.111) TCGA-18-3409-01 18 9887406 9887406 G T TXNDC2 Missense_Mutation p.K310N 0.30 tolerated(0.09) unknown(0) TCGA-18-3409-01 19 1004824 1004824 G A GRIN3B Missense_Mutation p.G442R 0.46 deleterious(0.01) possibly_damaging(0.661) TCGA-18-3409-01 19 10084444 10084444 G A COL5A3 Silent p.A1200A 0.32 TCGA-18-3409-01 19 10088084 10088084 C T COL5A3 Missense_Mutation p.G1064E 0.24 probably_damaging(1) TCGA-18-3409-01 19 10106767 10106767 C T COL5A3 Missense_Mutation p.G503E 0.36 unknown(0) TCGA-18-3409-01 19 10132325 10132325 G A RDH8 Missense_Mutation p.R299Q 0.36 tolerated(0.36) benign(0.009) TCGA-18-3409-01 19 10557008 10557008 C T PDE4A Silent p.S145S 0.29 TCGA-18-3409-01 19 10602625 10602625 G A KEAP1 Missense_Mutation p.P318L 0.19 deleterious(0.03) benign(0.32) TCGA-18-3409-01 19 10671754 10671754 G A KRI1 Silent p.A202A 0.39 TCGA-18-3409-01 19 10893691 10893691 C T DNM2 Silent p.I248I 0.25 TCGA-18-3409-01 19 11094861 11094861 C T SMARCA4 Missense_Mutation p.P12S 0.20 unknown(0) TCGA-18-3409-01 19 11094862 11094862 C T SMARCA4 Missense_Mutation p.P12L 0.20 unknown(0) TCGA-18-3409-01 19 11313129 11313129 C A DOCK6 Missense_Mutation p.V1798F 0.22 tolerated(0.86) benign(0.002) TCGA-18-3409-01 19 11489065 11489065 C T EPOR Nonsense_Mutation p.W374* 0.28 TCGA-18-3409-01 19 11832689 11832689 G A ZNF823 Missense_Mutation p.P554S 0.40 deleterious(0.04) benign(0.047) TCGA-18-3409-01 19 11891967 11891967 G A ZNF441 Missense_Mutation p.G443E 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-18-3409-01 19 11892026 11892026 C T ZNF441 Nonsense_Mutation p.R463* 0.21 TCGA-18-3409-01 19 11892203 11892203 G A ZNF441 Missense_Mutation p.E522K 0.36 tolerated(0.27) probably_damaging(0.973) TCGA-18-3409-01 19 11979089 11979089 G A ZNF439 Missense_Mutation p.R402K 0.25 tolerated(0.07) benign(0.339) TCGA-18-3409-01 19 12060004 12060004 C T ZNF700 Missense_Mutation p.R389C 0.25 deleterious(0) probably_damaging(0.93) TCGA-18-3409-01 19 12060728 12060728 G A ZNF700 Missense_Mutation p.R630K 0.21 tolerated(0.84) benign(0.229) TCGA-18-3409-01 19 12076001 12076001 C T ZNF763 5'UTR 0.41 TCGA-18-3409-01 19 12184910 12184910 C T ZNF844 Missense_Mutation p.P23L 0.36 deleterious(0.02) probably_damaging(0.975) TCGA-18-3409-01 19 12575525 12575525 G A ZNF709 Missense_Mutation p.S404F 0.12 tolerated(0.69) benign(0.441) TCGA-18-3409-01 19 12739979 12739979 C T ZNF791 Missense_Mutation p.H546Y 0.24 deleterious(0.03) probably_damaging(0.996) TCGA-18-3409-01 19 12807439 12807439 G A FBXW9 5'UTR 0.36 TCGA-18-3409-01 19 13566011 13566011 C T CACNA1A Missense_Mutation p.M103I 0.20 benign(0.043) TCGA-18-3409-01 19 1399145 1399146 GT - GAMT Frame_Shift_Del p.H147Pfs*43 0.14 TCGA-18-3409-01 19 14236970 14236970 G A ASF1B Silent p.G63G 0.25 TCGA-18-3409-01 19 14266334 14266334 C T LPHN1 Nonsense_Mutation p.W1049* 0.21 TCGA-18-3409-01 19 14806396 14806396 C T ZNF333 Missense_Mutation p.P49L 0.19 tolerated(0.13) possibly_damaging(0.713) TCGA-18-3409-01 19 15053203 15053203 G A OR7C2 Silent p.G301G 0.38 TCGA-18-3409-01 19 15053234 15053234 G A OR7C2 Missense_Mutation p.E312K 0.23 tolerated_low_confidence(0.82) benign(0.002) TCGA-18-3409-01 19 15132449 15132449 G A CCDC105 Missense_Mutation p.G355R 0.18 deleterious(0) probably_damaging(1) TCGA-18-3409-01 19 15132450 15132450 G A CCDC105 Missense_Mutation p.G355E 0.19 deleterious(0) probably_damaging(1) TCGA-18-3409-01 19 15296349 15296349 G A NOTCH3 Missense_Mutation p.P698L 0.32 deleterious(0.01) benign(0.185) TCGA-18-3409-01 19 15338338 15338338 G A EPHX3 Silent p.I331I 0.38 TCGA-18-3409-01 19 15754779 15754779 C T CYP4F3 Intron 0.28 TCGA-18-3409-01 19 15769356 15769356 G A CYP4F3 Silent p.P435P 0.28 TCGA-18-3409-01 19 15839433 15839433 C T OR10H2 Missense_Mutation p.P194S 0.40 tolerated(0.9) benign(0.014) TCGA-18-3409-01 19 15852774 15852774 G A OR10H3 Missense_Mutation p.G191E 0.32 tolerated(0.07) benign(0.049) TCGA-18-3409-01 19 16060372 16060372 C T OR10H4 Silent p.L185L 0.19 TCGA-18-3409-01 19 16279007 16279007 G A CIB3 Missense_Mutation p.S96F 0.38 deleterious(0) possibly_damaging(0.828) TCGA-18-3409-01 19 16613879 16613879 C T C19orf44 Missense_Mutation p.P255S 0.33 deleterious(0.01) benign(0.319) TCGA-18-3409-01 19 16770951 16770951 G A SMIM7 5'UTR 0.33 TCGA-18-3409-01 19 16797209 16797209 C T TMEM38A Missense_Mutation p.S222F 0.40 tolerated(0.07) possibly_damaging(0.776) TCGA-18-3409-01 19 16908679 16908679 C T NWD1 Silent p.S1147S 0.43 TCGA-18-3409-01 19 17000411 17000411 C T F2RL3 Missense_Mutation p.P46L 0.23 tolerated(0.06) benign(0.055) TCGA-18-3409-01 19 17476593 17476593 G A PLVAP Silent p.P227P 0.36 TCGA-18-3409-01 19 17945968 17945968 C T JAK3 Silent p.R657R 0.22 TCGA-18-3409-01 19 17945969 17945969 C T JAK3 Missense_Mutation p.R657Q 0.22 deleterious(0) probably_damaging(0.99) TCGA-18-3409-01 19 17985516 17985516 T C SLC5A5 Silent p.I173I 0.36 TCGA-18-3409-01 19 18121061 18121061 C T ARRDC2 Silent p.I302I 0.20 TCGA-18-3409-01 19 18380299 18380299 G A KIAA1683 5'UTR 0.18 TCGA-18-3409-01 19 18426871 18426871 G A LSM4 Missense_Mutation p.P3L 0.36 deleterious(0) possibly_damaging(0.691) TCGA-18-3409-01 19 18895874 18895874 G A COMP Silent p.F582F 0.32 TCGA-18-3409-01 19 18899070 18899070 C T COMP Missense_Mutation p.G309E 0.28 deleterious(0) probably_damaging(0.984) TCGA-18-3409-01 19 18899071 18899071 C T COMP Missense_Mutation p.G309R 0.28 deleterious(0) probably_damaging(0.989) TCGA-18-3409-01 19 19627014 19627014 C T NDUFA13 5'UTR 0.35 TCGA-18-3409-01 19 19654548 19654548 G A CILP2 Silent p.E398E 0.35 TCGA-18-3409-01 19 19762519 19762519 G A ATP13A1 Silent p.L772L 0.20 TCGA-18-3409-01 19 19823542 19823542 G A ZNF14 Missense_Mutation p.P183L 0.20 tolerated(0.33) benign(0.2) TCGA-18-3409-01 19 20117427 20117427 T G ZNF682 Missense_Mutation p.N295T 0.27 tolerated(0.18) possibly_damaging(0.453) TCGA-18-3409-01 19 2102253 2102253 G A AP3D1 Silent p.V1189V 0.37 TCGA-18-3409-01 19 2121814 2121814 G A AP3D1 Silent p.S340S 0.26 TCGA-18-3409-01 19 21477373 21477374 - CACAC ZNF708 Frame_Shift_Ins p.V132Gfs*3 0.13 TCGA-18-3409-01 19 21608801 21608801 C T ZNF493 3'UTR 0.45 TCGA-18-3409-01 19 22154265 22154265 G A ZNF208 Missense_Mutation p.H1191Y 0.27 deleterious(0.02) possibly_damaging(0.47) TCGA-18-3409-01 19 22170068 22170068 C T ZNF208 Missense_Mutation p.G59E 0.40 tolerated(0.13) benign(0.113) TCGA-18-3409-01 19 22271130 22271130 G A ZNF257 Missense_Mutation p.R193K 0.31 tolerated(0.49) benign(0.023) TCGA-18-3409-01 19 23405842 23405842 G A ZNF724P Missense_Mutation p.A402V 0.25 tolerated(0.05) probably_damaging(0.925) TCGA-18-3409-01 19 2733004 2733004 G A SLC39A3 Silent p.A230A 0.38 TCGA-18-3409-01 19 2733154 2733154 G A SLC39A3 Silent p.H180H 0.33 TCGA-18-3409-01 19 2799764 2799764 C T THOP1 Silent p.F188F 0.21 TCGA-18-3409-01 19 2934407 2934407 G A ZNF77 Missense_Mutation p.H240Y 0.41 tolerated(1) benign(0.367) TCGA-18-3409-01 19 31025885 31025885 G A ZNF536 Missense_Mutation p.V768M 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-18-3409-01 19 31768608 31768608 G A TSHZ3 Silent p.P697P 0.16 TCGA-18-3409-01 19 31768865 31768865 C T TSHZ3 Missense_Mutation p.E612K 0.26 deleterious(0.04) possibly_damaging(0.48) TCGA-18-3409-01 19 31768866 31768866 C T TSHZ3 Silent p.E611E 0.28 TCGA-18-3409-01 19 31770097 31770097 C T TSHZ3 Missense_Mutation p.S201N 0.15 tolerated(0.86) possibly_damaging(0.844) TCGA-18-3409-01 19 32899171 32899171 C T DPY19L3 Silent p.I4I 0.33 TCGA-18-3409-01 19 32949041 32949041 T C DPY19L3 Silent p.F375F 0.28 TCGA-18-3409-01 19 34818434 34818434 G A KIAA0355 Missense_Mutation p.E272K 0.18 tolerated(0.12) probably_damaging(0.953) TCGA-18-3409-01 19 34890524 34890524 G A GPI Missense_Mutation p.G499R 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-18-3409-01 19 35251045 35251045 G A ZNF599 Missense_Mutation p.H221Y 0.36 deleterious(0.02) probably_damaging(0.998) TCGA-18-3409-01 19 35449187 35449187 G A ZNF792 Silent p.H524H 0.17 TCGA-18-3409-01 19 35804284 35804284 G A MAG Missense_Mutation p.G603E 0.38 deleterious(0.04) benign(0.382) TCGA-18-3409-01 19 35850282 35850282 G A FFAR3 Missense_Mutation p.G164S 0.21 tolerated(0.79) benign(0.002) TCGA-18-3409-01 19 35941492 35941492 G A FFAR2 Silent p.R292R 0.23 TCGA-18-3409-01 19 3600403 3600403 C T TBXA2R Missense_Mutation p.G77E 0.30 deleterious(0) probably_damaging(1) TCGA-18-3409-01 19 36051371 36051371 G A ATP4A Silent p.S227S 0.38 TCGA-18-3409-01 19 36051372 36051372 G A ATP4A Missense_Mutation p.S227F 0.38 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 19 36278103 36278103 C T ARHGAP33 Missense_Mutation p.P718L 0.44 deleterious_low_confidence(0.04) probably_damaging(0.958) TCGA-18-3409-01 19 36302948 36302948 C T PRODH2 Silent p.K247K 0.18 TCGA-18-3409-01 19 36317382 36317382 C T NPHS1 3'UTR 0.21 TCGA-18-3409-01 19 36351482 36351482 G A KIRREL2 Missense_Mutation p.D281N 0.26 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 19 36884093 36884093 G A ZFP82 Silent p.L383L 0.24 TCGA-18-3409-01 19 37119318 37119318 G A ZNF382 3'UTR 0.30 TCGA-18-3409-01 19 37210388 37210388 A T ZNF567 Silent p.T223T 0.47 TCGA-18-3409-01 19 37399311 37399311 C T ZNF829 Nonsense_Mutation p.W130* 0.20 TCGA-18-3409-01 19 38160681 38160681 C T ZNF781 Nonsense_Mutation p.W123* 0.37 TCGA-18-3409-01 19 38896178 38896178 C T FAM98C Missense_Mutation p.S218F 0.13 deleterious(0.01) possibly_damaging(0.882) TCGA-18-3409-01 19 38937382 38937382 C T RYR1 Silent p.L258L 0.24 TCGA-18-3409-01 19 3905454 3905454 C T ATCAY Silent p.F53F 0.20 TCGA-18-3409-01 19 39076791 39076791 G A RYR1 Missense_Mutation p.E4977K 0.28 unknown(0) TCGA-18-3409-01 19 39196706 39196706 C T ACTN4 Silent p.L169L 0.15 TCGA-18-3409-01 19 39196707 39196707 C T ACTN4 Missense_Mutation p.L170F 0.15 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 19 39292471 39292471 G A LGALS4 Missense_Mutation p.S302L 0.25 tolerated(0.25) benign(0.011) TCGA-18-3409-01 19 39292733 39292733 C T LGALS4 Missense_Mutation p.G242S 0.26 tolerated(0.91) benign(0.003) TCGA-18-3409-01 19 39330769 39330769 G A AC104534.3 Silent p.F17F 0.24 TCGA-18-3409-01 19 39330771 39330771 A G AC104534.3 Missense_Mutation p.F17L 0.24 deleterious(0) unknown(0) TCGA-18-3409-01 19 40149154 40149154 A T LGALS16 Missense_Mutation p.E49D 0.67 tolerated(1) benign(0.001) TCGA-18-3409-01 19 40199971 40199971 C T LGALS14 3'Flank 0.42 TCGA-18-3409-01 19 40362803 40362803 G A FCGBP Silent p.F5089F 0.19 TCGA-18-3409-01 19 40433636 40433636 C T FCGBP Silent p.G211G 0.32 TCGA-18-3409-01 19 40828027 40828027 G A C19orf47 Missense_Mutation p.P344L 0.12 deleterious(0.04) benign(0.006) TCGA-18-3409-01 19 40828028 40828028 G A C19orf47 Missense_Mutation p.P344S 0.13 tolerated(0.13) benign(0.019) TCGA-18-3409-01 19 41510013 41510013 G C CYP2B6 Missense_Mutation p.E93D 0.16 tolerated(0.3) benign(0.078) TCGA-18-3409-01 19 41515196 41515196 G A CYP2B6 Missense_Mutation p.E240K 0.18 tolerated(0.46) benign(0.122) TCGA-18-3409-01 19 42093009 42093009 G A CEACAM21 3'Flank 0.58 TCGA-18-3409-01 19 42093010 42093010 G A CEACAM21 3'Flank 0.58 TCGA-18-3409-01 19 42187819 42187819 G A CEACAM7 Silent p.L201L 0.25 TCGA-18-3409-01 19 42191133 42191133 C T CEACAM7 Nonsense_Mutation p.W28* 0.50 TCGA-18-3409-01 19 4219746 4219746 G A ANKRD24 Silent p.K1054K 0.25 TCGA-18-3409-01 19 4219747 4219747 G A ANKRD24 Missense_Mutation p.D1055N 0.28 deleterious(0) possibly_damaging(0.9) TCGA-18-3409-01 19 42301575 42301575 C T CEACAM3 Missense_Mutation p.S40F 0.37 deleterious(0) probably_damaging(0.989) TCGA-18-3409-01 19 42355712 42355712 C T DMRTC2 Missense_Mutation p.P351L 0.13 deleterious(0.01) possibly_damaging(0.448) TCGA-18-3409-01 19 42485756 42485756 G A ATP1A3 Silent p.A458A 0.29 TCGA-18-3409-01 19 42563519 42563519 G A GRIK5 Silent p.S223S 0.29 TCGA-18-3409-01 19 42585541 42585541 C T ZNF574 3'UTR 0.42 TCGA-18-3409-01 19 42729860 42729860 C T ZNF526 Silent p.P435P 0.38 TCGA-18-3409-01 19 42824508 42824508 C T TMEM145 Silent p.F371F 0.18 TCGA-18-3409-01 19 42932942 42932942 G A CXCL17 3'UTR 0.46 TCGA-18-3409-01 19 43358258 43358258 A T PSG10P RNA 0.19 TCGA-18-3409-01 19 44271811 44271811 G A KCNN4 Missense_Mutation p.R390W 0.17 deleterious(0) possibly_damaging(0.614) TCGA-18-3409-01 19 44378083 44378083 C T ZNF404 Missense_Mutation p.E95K 0.40 tolerated(0.74) benign(0.002) TCGA-18-3409-01 19 44470564 44470564 C T ZNF221 Missense_Mutation p.H304Y 0.18 deleterious(0) probably_damaging(1) TCGA-18-3409-01 19 44471222 44471222 C T ZNF221 Missense_Mutation p.S523F 0.16 tolerated(0.12) benign(0.003) TCGA-18-3409-01 19 44516718 44516718 G A ZNF230 3'UTR 0.53 TCGA-18-3409-01 19 44571702 44571702 C T ZNF223 3'UTR 0.67 TCGA-18-3409-01 19 45004386 45004386 G A ZNF180 5'UTR 0.42 TCGA-18-3409-01 19 45153245 45153245 G C PVR Missense_Mutation p.G198R 0.46 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 19 45716584 45716584 G A EXOC3L2 Missense_Mutation p.R325C 0.40 deleterious(0) probably_damaging(1) TCGA-18-3409-01 19 46021010 46021010 C T VASP Missense_Mutation p.A32V 0.38 deleterious(0.01) unknown(0) TCGA-18-3409-01 19 46021011 46021011 C T VASP Silent p.A32A 0.40 TCGA-18-3409-01 19 46195222 46195222 C T SNRPD2 5'UTR 0.42 TCGA-18-3409-01 19 46307946 46307946 G A RSPH6A Missense_Mutation p.S406F 0.22 deleterious(0.04) possibly_damaging(0.786) TCGA-18-3409-01 19 46355740 46355740 A T SYMPK Missense_Mutation p.D75E 0.43 tolerated(0.26) probably_damaging(0.986) TCGA-18-3409-01 19 46388122 46388122 G A IRF2BP1 Missense_Mutation p.P304L 0.25 tolerated(0.71) benign(0.038) TCGA-18-3409-01 19 46443310 46443310 C T NOVA2 Silent p.V430V 0.37 TCGA-18-3409-01 19 46914555 46914555 G A CCDC8 Silent p.L505L 0.19 TCGA-18-3409-01 19 46915085 46915085 C T CCDC8 Missense_Mutation p.G328E 0.49 benign(0.018) TCGA-18-3409-01 19 47424480 47424480 C T ARHGAP35 Missense_Mutation p.R850W 0.16 deleterious(0.01) benign(0.006) TCGA-18-3409-01 19 47912413 47912413 C T MEIS3 Silent p.G267G 0.39 TCGA-18-3409-01 19 47991584 47991584 G A NAPA Silent p.I283I 0.35 TCGA-18-3409-01 19 47996796 47996798 GCG CA NAPA Intron 0.36 TCGA-18-3409-01 19 48601396 48601396 C T PLA2G4C Missense_Mutation p.E200K 0.27 tolerated(0.71) benign(0.009) TCGA-18-3409-01 19 48603039 48603039 C T PLA2G4C Silent p.Q122Q 0.36 TCGA-18-3409-01 19 48636269 48636269 G C LIG1 Missense_Mutation p.C565W 0.44 deleterious(0) probably_damaging(1) TCGA-18-3409-01 19 48646813 48646813 C T LIG1 Missense_Mutation p.E301K 0.40 tolerated(0.11) benign(0.4) TCGA-18-3409-01 19 48975678 48975678 A C CYTH2 Missense_Mutation p.I111L 0.33 deleterious(0) possibly_damaging(0.571) TCGA-18-3409-01 19 49167065 49167065 G A NTN5 Missense_Mutation p.P326L 0.27 deleterious(0.03) benign(0.059) TCGA-18-3409-01 19 49391367 49391367 G A TULP2 Missense_Mutation p.S263F 0.29 tolerated(0.09) benign(0.002) TCGA-18-3409-01 19 49391432 49391432 G A TULP2 Silent p.A241A 0.27 TCGA-18-3409-01 19 49469080 49469080 C T FTL Silent p.F52F 0.21 TCGA-18-3409-01 19 49540018 49540018 G A CGB1 5'UTR 0.13 TCGA-18-3409-01 19 49631724 49631724 G A PPFIA3 Missense_Mutation p.R114Q 0.43 deleterious(0.01) probably_damaging(0.997) TCGA-18-3409-01 19 49631725 49631725 G A PPFIA3 Silent p.R114R 0.44 TCGA-18-3409-01 19 498516 498516 G A MADCAM1 Missense_Mutation p.V120I 0.22 deleterious(0.04) benign(0.134) TCGA-18-3409-01 19 49913125 49913125 G A CCDC155 Missense_Mutation p.G421E 0.47 tolerated_low_confidence(0.11) benign(0.201) TCGA-18-3409-01 19 49913126 49913126 G A CCDC155 Silent p.G421G 0.47 TCGA-18-3409-01 19 50208544 50208544 G A CPT1C Missense_Mutation p.G318E 0.19 deleterious(0) probably_damaging(0.965) TCGA-18-3409-01 19 50247621 50247621 C T TSKS Missense_Mutation p.E410K 0.36 deleterious(0.02) possibly_damaging(0.563) TCGA-18-3409-01 19 50475142 50475142 G A VRK3 3'Flank 0.42 TCGA-18-3409-01 19 50475350 50475350 C T VRK3 3'Flank 0.12 TCGA-18-3409-01 19 50864256 50864256 C T NAPSA Missense_Mutation p.D204N 0.39 tolerated(0.15) probably_damaging(1) TCGA-18-3409-01 19 50926872 50926872 C T SPIB Missense_Mutation p.P117L 0.22 tolerated(0.11) benign(0.403) TCGA-18-3409-01 19 51128808 51128808 C T SYT3 Silent p.K472K 0.24 TCGA-18-3409-01 19 5144825 5144825 C T KDM4B Missense_Mutation p.S978F 0.24 benign(0.002) TCGA-18-3409-01 19 51530806 51530806 C T KLK11 5'UTR 0.22 TCGA-18-3409-01 19 51630380 51630380 C T SIGLEC9 Missense_Mutation p.P281L 0.12 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 19 51645695 51645695 G A SIGLEC7 Silent p.R23R 0.39 TCGA-18-3409-01 19 51671041 51671041 G A CTD-3187F8.14 Intron 0.20 TCGA-18-3409-01 19 51875759 51875759 C T NKG7 Missense_Mutation p.G11R 0.33 tolerated(0.06) benign(0.067) TCGA-18-3409-01 19 52003495 52003495 C T SIGLEC12 Missense_Mutation p.E163K 0.34 deleterious(0.02) possibly_damaging(0.79) TCGA-18-3409-01 19 52003496 52003496 C T SIGLEC12 Silent p.Q162Q 0.32 TCGA-18-3409-01 19 52249567 52249567 C T FPR1 Silent p.K227K 0.44 TCGA-18-3409-01 19 52496630 52496630 G A ZNF615 Missense_Mutation p.P578S 0.49 tolerated(0.1) benign(0.224) TCGA-18-3409-01 19 52521720 52521720 C G ZNF614 Missense_Mutation p.V15L 0.28 deleterious(0.02) probably_damaging(0.987) TCGA-18-3409-01 19 52724338 52724338 C T PPP2R1A Silent p.S490S 0.23 TCGA-18-3409-01 19 52857607 52857607 G A ZNF610 Silent p.R98R 0.70 TCGA-18-3409-01 19 52919338 52919338 C T ZNF528 Silent p.C411C 0.26 TCGA-18-3409-01 19 53014301 53014301 G A ZNF578 Missense_Mutation p.E223K 0.18 tolerated(1) benign(0.069) TCGA-18-3409-01 19 53014382 53014382 C T ZNF578 Nonsense_Mutation p.Q250* 0.10 TCGA-18-3409-01 19 53014608 53014608 G A ZNF578 Missense_Mutation p.S325N 0.40 tolerated(0.23) benign(0.064) TCGA-18-3409-01 19 53015300 53015300 A C ZNF578 Missense_Mutation p.N556H 0.39 tolerated(0.59) benign(0.015) TCGA-18-3409-01 19 53269658 53269658 A G ZNF600 Missense_Mutation p.F451L 0.23 deleterious(0) probably_damaging(0.989) TCGA-18-3409-01 19 53741139 53741139 G A ZNF677 Missense_Mutation p.H281Y 0.21 deleterious(0.01) probably_damaging(0.964) TCGA-18-3409-01 19 53762721 53762721 T G VN1R2 Missense_Mutation p.F365V 0.49 deleterious(0) probably_damaging(0.988) TCGA-18-3409-01 19 53770583 53770583 C T VN1R4 Silent p.R112R 0.29 TCGA-18-3409-01 19 53959500 53959500 G T ZNF761 RNA 0.40 TCGA-18-3409-01 19 54214278 54214278 G A MIR524 RNA 0.16 TCGA-18-3409-01 19 54219882 54219882 C T MIR521-2 RNA 0.35 TCGA-18-3409-01 19 54224374 54224374 C T MIR517B RNA 0.16 TCGA-18-3409-01 19 54240181 54240181 C T MIR516B1 RNA 0.23 TCGA-18-3409-01 19 54304506 54304506 G A NLRP12 Missense_Mutation p.P911S 0.21 tolerated(0.1) benign(0.069) TCGA-18-3409-01 19 54675741 54675741 C T TMC4 Missense_Mutation p.G70E 0.15 tolerated(0.31) benign(0.004) TCGA-18-3409-01 19 54677792 54677792 C T MBOAT7 Silent p.R455R 0.36 TCGA-18-3409-01 19 54744735 54744735 G A LILRA6 Silent p.P309P 0.17 TCGA-18-3409-01 19 54760033 54760033 G A LILRB5 Silent p.S176S 0.23 TCGA-18-3409-01 19 54760446 54760446 G A LILRB5 Silent p.S87S 0.12 TCGA-18-3409-01 19 54760447 54760447 G A LILRB5 Missense_Mutation p.S87F 0.12 tolerated(0.29) benign(0.336) TCGA-18-3409-01 19 54802093 54802093 G A LILRA3 Silent p.S365S 0.26 TCGA-18-3409-01 19 54802698 54802698 G A LILRA3 Missense_Mutation p.S248F 0.24 deleterious(0) probably_damaging(0.987) TCGA-18-3409-01 19 54973752 54973752 C T LENG9 Missense_Mutation p.E342K 0.22 tolerated(0.13) possibly_damaging(0.831) TCGA-18-3409-01 19 55046997 55046997 C T KIR3DX1 Missense_Mutation p.S181F 0.41 tolerated(0.11) benign(0.14) TCGA-18-3409-01 19 55084886 55084886 G A LILRA2 5'UTR 0.33 TCGA-18-3409-01 19 55098690 55098690 G A LILRA2 Silent p.Q443Q 0.10 TCGA-18-3409-01 19 55143641 55143641 C T LILRB1 Missense_Mutation p.P205L 0.32 deleterious(0.01) possibly_damaging(0.471) TCGA-18-3409-01 19 55221940 55221940 C T AC098784.2 3'Flank 0.30 TCGA-18-3409-01 19 55247337 55247337 G A KIR3DL3 Missense_Mutation p.E369K 0.39 deleterious(0) possibly_damaging(0.698) TCGA-18-3409-01 19 55255278 55255278 G A KIR2DL3 Missense_Mutation p.G136S 0.44 tolerated(0.08) probably_damaging(0.989) TCGA-18-3409-01 19 55301642 55301642 G A CTB-61M7.1 RNA 0.56 TCGA-18-3409-01 19 55329785 55329785 C T KIR3DL1 Missense_Mutation p.P29L 0.62 tolerated(0.21) probably_damaging(0.965) TCGA-18-3409-01 19 55329913 55329913 C T KIR3DL1 Missense_Mutation p.H72Y 0.20 tolerated(0.41) benign(0.004) TCGA-18-3409-01 19 55349152 55349152 G A KIR2DS4 Silent p.G64G 0.16 TCGA-18-3409-01 19 55396865 55396865 C G FCAR Missense_Mutation p.R97G 0.30 tolerated(0.07) possibly_damaging(0.647) TCGA-18-3409-01 19 55417961 55417961 G A NCR1 Missense_Mutation p.G51R 0.10 deleterious(0) probably_damaging(1) TCGA-18-3409-01 19 55451163 55451163 G A NLRP7 Nonsense_Mutation p.Q342* 0.30 TCGA-18-3409-01 19 55451164 55451164 G A NLRP7 Silent p.D341D 0.29 TCGA-18-3409-01 19 55493720 55493720 G A NLRP2 Silent p.G218G 0.36 TCGA-18-3409-01 19 55686339 55686339 G A SYT5 Missense_Mutation p.S246F 0.24 deleterious(0) probably_damaging(0.996) TCGA-18-3409-01 19 55966703 55966703 G A ISOC2 Missense_Mutation p.P131S 0.36 deleterious_low_confidence(0) benign(0.005) TCGA-18-3409-01 19 55966704 55966704 G A ISOC2 Silent p.Y130Y 0.36 TCGA-18-3409-01 19 56220399 56220399 G A NLRP9 Missense_Mutation p.S952F 0.21 deleterious(0) possibly_damaging(0.656) TCGA-18-3409-01 19 56297027 56297027 C T NLRP11 Missense_Mutation p.M1022I 0.46 tolerated_low_confidence(0.15) benign(0.055) TCGA-18-3409-01 19 56329493 56329493 C T NLRP11 Silent p.E16E 0.34 TCGA-18-3409-01 19 56363641 56363641 A G NLRP4 Silent p.E65E 0.24 TCGA-18-3409-01 19 56369181 56369181 C T NLRP4 Missense_Mutation p.P141L 0.21 deleterious(0.01) benign(0.027) TCGA-18-3409-01 19 56369416 56369416 C T NLRP4 Silent p.I219I 0.31 TCGA-18-3409-01 19 56422029 56422029 G T NLRP13 Missense_Mutation p.L728M 0.17 tolerated(0.18) benign(0.052) TCGA-18-3409-01 19 56423076 56423076 G A NLRP13 Silent p.L703L 0.23 TCGA-18-3409-01 19 56423566 56423566 G A NLRP13 Silent p.F539F 0.47 TCGA-18-3409-01 19 56423896 56423896 C T NLRP13 Nonsense_Mutation p.W429* 0.13 TCGA-18-3409-01 19 56515202 56515202 C T NLRP5 Silent p.S61S 0.20 TCGA-18-3409-01 19 56569657 56569657 C T NLRP5 Silent p.A1117A 0.46 TCGA-18-3409-01 19 56701471 56701471 G A ZSCAN5B Missense_Mutation p.H405Y 0.27 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 19 56701472 56701472 G A ZSCAN5B Silent p.V404V 0.27 TCGA-18-3409-01 19 56935574 56935574 G A ZNF583 Missense_Mutation p.G516E 0.40 deleterious(0.02) probably_damaging(1) TCGA-18-3409-01 19 56969570 56969570 C T ZNF667 Silent p.G69G 0.23 TCGA-18-3409-01 19 56973716 56973716 G A ZNF667 Silent p.S8S 0.36 TCGA-18-3409-01 19 57035792 57035792 C T ZNF471 Missense_Mutation p.S119F 0.37 tolerated(0.07) benign(0.001) TCGA-18-3409-01 19 57035940 57035940 C T ZNF471 Silent p.I168I 0.36 TCGA-18-3409-01 19 57060384 57060384 G A ZFP28 Missense_Mutation p.G194E 0.29 tolerated(1) benign(0.001) TCGA-18-3409-01 19 57133813 57133813 C T ZNF71 Silent p.I386I 0.26 TCGA-18-3409-01 19 57176237 57176237 C T ZNF835 Nonsense_Mutation p.W110* 0.12 TCGA-18-3409-01 19 57176473 57176473 C T ZNF835 Missense_Mutation p.E32K 0.29 tolerated(0.27) benign(0.078) TCGA-18-3409-01 19 57328601 57328601 C T PEG3 Silent p.S403S 0.16 TCGA-18-3409-01 19 57642683 57642683 C T USP29 Silent p.F880F 0.36 TCGA-18-3409-01 19 57649966 57649966 C T ZIM3 Missense_Mutation p.G6R 0.21 tolerated(0.11) probably_damaging(0.991) TCGA-18-3409-01 19 5772893 5772893 C T CATSPERD Nonsense_Mutation p.Q620* 0.26 TCGA-18-3409-01 19 57869017 57869017 A G ZNF304 Missense_Mutation p.K594E 0.18 deleterious(0) probably_damaging(0.979) TCGA-18-3409-01 19 57967657 57967657 G A VN1R1 Silent p.L66L 0.19 TCGA-18-3409-01 19 58232072 58232072 C T ZNF671 Missense_Mutation p.S461N 0.36 tolerated(0.1) benign(0.018) TCGA-18-3409-01 19 58265935 58265935 G A ZNF776 Silent p.Q479Q 0.45 TCGA-18-3409-01 19 58601296 58601296 G A ZSCAN18 Silent p.Y169Y 0.13 TCGA-18-3409-01 19 58601475 58601475 C T ZSCAN18 Missense_Mutation p.E110K 0.38 tolerated(0.23) benign(0.194) TCGA-18-3409-01 19 5923310 5923310 G A RANBP3 Silent p.S368S 0.32 TCGA-18-3409-01 19 608089 608089 G A HCN2 Missense_Mutation p.M448I 0.27 deleterious(0) possibly_damaging(0.574) TCGA-18-3409-01 19 6454034 6454034 G A SLC25A23 Silent p.S287S 0.46 TCGA-18-3409-01 19 6495841 6495841 C T TUBB4A Silent p.G223G 0.24 TCGA-18-3409-01 19 6495842 6495842 C T TUBB4A Missense_Mutation p.G223E 0.24 deleterious_low_confidence(0.01) probably_damaging(0.918) TCGA-18-3409-01 19 6697786 6697786 G A C3 Silent p.P820P 0.39 TCGA-18-3409-01 19 6760858 6760858 C T SH2D3A Silent p.R70R 0.26 TCGA-18-3409-01 19 6977343 6977343 C T EMR4P RNA 0.43 TCGA-18-3409-01 19 7267435 7267435 C T INSR Silent p.K191K 0.45 TCGA-18-3409-01 19 7267448 7267448 G A INSR Missense_Mutation p.P187L 0.10 deleterious(0.02) probably_damaging(1) TCGA-18-3409-01 19 7267449 7267449 G A INSR Missense_Mutation p.P187S 0.11 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 19 7573114 7573114 C T C19orf45 Missense_Mutation p.P439L 0.18 tolerated(0.19) probably_damaging(0.918) TCGA-18-3409-01 19 7747619 7747619 C T TRAPPC5 Silent p.V160V 0.50 TCGA-18-3409-01 19 7764653 7764653 C T FCER2 5'UTR 0.20 TCGA-18-3409-01 19 7805456 7805456 G A CD209 3'UTR 0.32 TCGA-18-3409-01 19 7830673 7830673 G T CLEC4M Missense_Mutation p.A122S 0.17 tolerated(0.05) probably_damaging(0.986) TCGA-18-3409-01 19 7831059 7831059 C T CLEC4M Silent p.I250I 0.30 TCGA-18-3409-01 19 7963609 7963609 C T LRRC8E Missense_Mutation p.P68S 0.22 tolerated(0.84) benign(0.003) TCGA-18-3409-01 19 7963610 7963610 C A LRRC8E Missense_Mutation p.P68Q 0.22 tolerated(0.72) possibly_damaging(0.452) TCGA-18-3409-01 19 8151968 8151968 G A FBN3 Silent p.G2249G 0.21 TCGA-18-3409-01 19 8564087 8564087 G A PRAM1 Missense_Mutation p.P202L 0.26 tolerated(0.49) benign(0.017) TCGA-18-3409-01 19 8595157 8595157 C T MYO1F Missense_Mutation p.E751K 0.19 tolerated(0.29) benign(0.313) TCGA-18-3409-01 19 8808975 8808975 G A ACTL9 Missense_Mutation p.P26L 0.19 deleterious_low_confidence(0.02) benign(0.007) TCGA-18-3409-01 19 8969305 8969305 G A MUC16 Nonsense_Mutation p.Q14347* 0.20 TCGA-18-3409-01 19 8997448 8997448 C T MUC16 Silent p.R13658R 0.33 TCGA-18-3409-01 19 9002624 9002624 G A MUC16 Missense_Mutation p.R13398C 0.16 probably_damaging(0.975) TCGA-18-3409-01 19 9003653 9003653 A G MUC16 Silent p.F13329F 0.37 TCGA-18-3409-01 19 9013861 9013861 G A MUC16 Silent p.S12843S 0.17 TCGA-18-3409-01 19 9019293 9019293 A T MUC16 Missense_Mutation p.S12532T 0.17 benign(0.095) TCGA-18-3409-01 19 9033707 9033707 G A MUC16 Missense_Mutation p.T12077I 0.28 possibly_damaging(0.609) TCGA-18-3409-01 19 9057848 9057848 C G MUC16 Missense_Mutation p.R9866S 0.20 unknown(0) TCGA-18-3409-01 19 9060341 9060341 G A MUC16 Silent p.S9035S 0.17 TCGA-18-3409-01 19 9061307 9061307 G A MUC16 Silent p.I8713I 0.30 TCGA-18-3409-01 19 9062148 9062148 C T MUC16 Missense_Mutation p.G8433E 0.38 unknown(0) TCGA-18-3409-01 19 9063550 9063550 C T MUC16 Missense_Mutation p.E7966K 0.24 unknown(0) TCGA-18-3409-01 19 9063715 9063715 G A MUC16 Missense_Mutation p.P7911S 0.24 unknown(0) TCGA-18-3409-01 19 9072915 9072915 G A MUC16 Missense_Mutation p.S4844L 0.21 unknown(0) TCGA-18-3409-01 19 9073897 9073897 C T MUC16 Missense_Mutation p.E4517K 0.32 unknown(0) TCGA-18-3409-01 19 9074626 9074626 G A MUC16 Missense_Mutation p.P4274S 0.22 unknown(0) TCGA-18-3409-01 19 9077289 9077289 G A MUC16 Missense_Mutation p.S3386F 0.20 unknown(0) TCGA-18-3409-01 19 9091240 9091240 G A MUC16 Missense_Mutation p.P192L 0.30 unknown(0) TCGA-18-3409-01 19 9091756 9091756 C T MUC16 Missense_Mutation p.G20E 0.18 unknown(0) TCGA-18-3409-01 19 9204664 9204664 T C OR1M1 Silent p.V248V 0.20 TCGA-18-3409-01 19 9271287 9271287 C T ZNF317 Silent p.I322I 0.29 TCGA-18-3409-01 19 9452969 9452969 C T ZNF559 Missense_Mutation p.S281F 0.22 tolerated(0.21) benign(0) TCGA-18-3409-01 19 9801493 9801493 G A ZNF812 Missense_Mutation p.S229F 0.32 deleterious(0.01) possibly_damaging(0.794) TCGA-18-3409-01 1 100111912 100111912 C T PALMD Silent p.A13A 0.41 TCGA-18-3409-01 1 100587028 100587028 G A SASS6 Missense_Mutation p.P130L 0.28 deleterious(0.02) possibly_damaging(0.864) TCGA-18-3409-01 1 102270080 102270080 C T OLFM3 Missense_Mutation p.S364N 0.13 deleterious(0) benign(0.346) TCGA-18-3409-01 1 103343489 103343489 T G COL11A1 3'UTR 0.36 TCGA-18-3409-01 1 10364096 10364096 C T KIF1B Intron 0.30 TCGA-18-3409-01 1 10384043 10384043 C T KIF1B Silent p.F774F 0.44 TCGA-18-3409-01 1 104297236 104297236 G A AMY1C Missense_Mutation p.D332N 0.06 tolerated(0.34) benign(0.102) TCGA-18-3409-01 1 10529258 10529258 C T DFFA Missense_Mutation p.E92K 0.25 deleterious(0.03) probably_damaging(0.984) TCGA-18-3409-01 1 107938085 107938085 C T NTNG1 Intron 0.31 TCGA-18-3409-01 1 108328083 108328083 G A VAV3 Intron 0.24 TCGA-18-3409-01 1 109793891 109793891 C T CELSR2 Missense_Mutation p.P397L 0.24 deleterious(0) probably_damaging(1) TCGA-18-3409-01 1 110589365 110589365 C T STRIP1 Missense_Mutation p.L494F 0.22 tolerated(0.17) probably_damaging(0.924) TCGA-18-3409-01 1 110717573 110717573 C T SLC6A17 Silent p.S248S 0.22 TCGA-18-3409-01 1 110889116 110889116 C T RBM15 3'UTR 0.33 TCGA-18-3409-01 1 111439345 111439345 G A CD53 Missense_Mutation p.R165Q 0.30 tolerated(0.67) benign(0) TCGA-18-3409-01 1 111440442 111440442 G A CD53 Silent p.A172A 0.32 TCGA-18-3409-01 1 111490704 111490704 G A LRIF1 Silent p.F729F 0.21 TCGA-18-3409-01 1 111860303 111860303 G A CHIA Missense_Mutation p.E161K 0.17 deleterious(0.01) possibly_damaging(0.527) TCGA-18-3409-01 1 112303767 112303767 C T DDX20 Intron 0.42 TCGA-18-3409-01 1 113238187 113238187 G A MOV10 Silent p.E590E 0.35 TCGA-18-3409-01 1 113238188 113238188 G A MOV10 Missense_Mutation p.D591N 0.37 tolerated(0.09) benign(0.384) TCGA-18-3409-01 1 114515898 114515898 T A HIPK1 Missense_Mutation p.F1133I 0.38 deleterious(0.03) benign(0.067) TCGA-18-3409-01 1 115137115 115137115 G A DENND2C Nonsense_Mutation p.Q804* 0.25 TCGA-18-3409-01 1 11584057 11584057 G A PTCHD2 Silent p.K807K 0.30 TCGA-18-3409-01 1 11595632 11595632 G A PTCHD2 Silent p.V1249V 0.12 TCGA-18-3409-01 1 116226635 116226635 C T VANGL1 Silent p.S339S 0.33 TCGA-18-3409-01 1 118483498 118483498 C T WDR3 Missense_Mutation p.P242S 0.31 tolerated(0.72) benign(0.001) TCGA-18-3409-01 1 118483499 118483499 C T WDR3 Missense_Mutation p.P242L 0.30 tolerated(0.32) benign(0) TCGA-18-3409-01 1 118538995 118538995 G A SPAG17 Missense_Mutation p.P1684L 0.25 deleterious(0) probably_damaging(1) TCGA-18-3409-01 1 118548057 118548057 G A SPAG17 Missense_Mutation p.P1586S 0.35 deleterious(0) probably_damaging(0.995) TCGA-18-3409-01 1 118574470 118574470 C T SPAG17 Missense_Mutation p.E1152K 0.15 tolerated(0.31) possibly_damaging(0.533) TCGA-18-3409-01 1 118581951 118581951 C T SPAG17 Missense_Mutation p.E1095K 0.33 tolerated(0.5) benign(0.003) TCGA-18-3409-01 1 11887200 11887200 C T CLCN6 Silent p.F254F 0.31 TCGA-18-3409-01 1 119683305 119683305 C T WARS2 5'Flank 0.21 TCGA-18-3409-01 1 120056657 120056657 G A HSD3B1 Missense_Mutation p.G171R 0.41 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 1 12024743 12024743 C T PLOD1 Silent p.I457I 0.45 TCGA-18-3409-01 1 120437686 120437686 C T ADAM30 Missense_Mutation p.R425Q 0.18 tolerated(0.61) benign(0.028) TCGA-18-3409-01 1 120510184 120510184 C G NOTCH2 Missense_Mutation p.C442S 0.24 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 1 120510817 120510817 G A NOTCH2 Missense_Mutation p.P383S 0.22 deleterious(0) probably_damaging(1) TCGA-18-3409-01 1 12403072 12403072 C T VPS13D Missense_Mutation p.P2950L 0.33 probably_damaging(0.998) TCGA-18-3409-01 1 12887609 12887609 C T PRAMEF11 Missense_Mutation p.G83E 0.19 tolerated(1) benign(0.011) TCGA-18-3409-01 1 12907391 12907391 C T HNRNPCL1 Missense_Mutation p.G251E 0.41 tolerated(0.26) possibly_damaging(0.616) TCGA-18-3409-01 1 144994956 144994956 C T PDE4DIP 5'UTR 0.08 TCGA-18-3409-01 1 145416841 145416841 C T HFE2 Missense_Mutation p.L396F 0.40 deleterious(0) probably_damaging(0.933) TCGA-18-3409-01 1 145579331 145579331 C T PIAS3 Missense_Mutation p.P223L 0.19 deleterious(0) probably_damaging(1) TCGA-18-3409-01 1 146658808 146658808 G T FMO5 Missense_Mutation p.R425S 0.23 tolerated(0.33) possibly_damaging(0.853) TCGA-18-3409-01 1 146757105 146757105 G A CHD1L Silent p.K653K 0.21 TCGA-18-3409-01 1 147122092 147122092 G A ACP6 Intron 0.46 TCGA-18-3409-01 1 147122093 147122093 G A ACP6 Intron 0.46 TCGA-18-3409-01 1 147380281 147380281 G A GJA8 Missense_Mutation p.D67N 0.40 deleterious(0) probably_damaging(0.981) TCGA-18-3409-01 1 149884930 149884930 T G SV2A Missense_Mutation p.I155L 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-18-3409-01 1 149902774 149902774 G A MTMR11 Silent p.F458F 0.50 TCGA-18-3409-01 1 150482308 150482308 C T ECM1 Intron 0.34 TCGA-18-3409-01 1 150784532 150784532 G A ARNT Missense_Mutation p.P779S 0.25 tolerated_low_confidence(0.14) benign(0.139) TCGA-18-3409-01 1 150790443 150790443 G A ARNT Silent p.P486P 0.27 TCGA-18-3409-01 1 150958867 150958867 G A ANXA9 Silent p.Q176Q 0.55 TCGA-18-3409-01 1 150971880 150971880 G A FAM63A Nonsense_Mutation p.R364* 0.33 TCGA-18-3409-01 1 150971965 150971965 C T FAM63A Silent p.L335L 0.44 TCGA-18-3409-01 1 150971968 150971968 G A FAM63A Silent p.F334F 0.18 TCGA-18-3409-01 1 151015542 151015542 C T BNIPL Nonsense_Mutation p.R182* 0.27 TCGA-18-3409-01 1 151278830 151278830 G A PI4KB Silent p.L410L 0.19 TCGA-18-3409-01 1 151677575 151677575 C T CELF3 Missense_Mutation p.G447D 0.32 deleterious(0) probably_damaging(1) TCGA-18-3409-01 1 152058447 152058447 C T TCHHL1 Missense_Mutation p.G571R 0.25 tolerated(0.22) benign(0.267) TCGA-18-3409-01 1 152058776 152058776 C T TCHHL1 Missense_Mutation p.G461E 0.24 tolerated(0.48) benign(0.186) TCGA-18-3409-01 1 152188180 152188180 G A HRNR Silent p.S1975S 0.04 TCGA-18-3409-01 1 152276621 152276621 G A FLG Missense_Mutation p.H3581Y 0.24 unknown(0) TCGA-18-3409-01 1 152278894 152278894 C T FLG Missense_Mutation p.G2823E 0.32 benign(0.366) TCGA-18-3409-01 1 152283957 152283957 C T FLG Silent p.R1135R 0.42 TCGA-18-3409-01 1 152325569 152325569 C T FLG2 Missense_Mutation p.G1565R 0.32 probably_damaging(0.995) TCGA-18-3409-01 1 152944652 152944652 G A SPRR4 3'UTR 0.11 TCGA-18-3409-01 1 153390678 153390678 C T S100A7A Silent p.F40F 0.28 TCGA-18-3409-01 1 153659802 153659802 G A NPR1 Missense_Mutation p.D688N 0.47 tolerated(0.1) benign(0.021) TCGA-18-3409-01 1 153932526 153932526 A C SLC39A1 3'UTR 0.28 TCGA-18-3409-01 1 153933221 153933221 G A SLC39A1 Missense_Mutation p.P110S 0.50 deleterious(0.01) possibly_damaging(0.717) TCGA-18-3409-01 1 153963243 153963243 C T RPS27 5'UTR 0.34 TCGA-18-3409-01 1 154242790 154242790 C T UBAP2L 3'UTR 0.20 TCGA-18-3409-01 1 154246318 154246318 A G HAX1 Missense_Mutation p.M129V 0.33 deleterious(0) benign(0.12) TCGA-18-3409-01 1 15428226 15428226 C T KAZN Silent p.L579L 0.60 TCGA-18-3409-01 1 154966201 154966201 C T LENEP Nonsense_Mutation p.Q40* 0.30 TCGA-18-3409-01 1 154988918 154988918 C T ZBTB7B Silent p.T493T 0.44 TCGA-18-3409-01 1 155029676 155029676 C T ADAM15 Silent p.G387G 0.34 TCGA-18-3409-01 1 155168253 155168253 G A THBS3 Missense_Mutation p.P674L 0.33 deleterious(0.01) probably_damaging(0.924) TCGA-18-3409-01 1 155449538 155449538 C T ASH1L Silent p.K1041K 0.45 TCGA-18-3409-01 1 155450362 155450362 G A ASH1L Missense_Mutation p.P767S 0.29 tolerated_low_confidence(1) benign(0) TCGA-18-3409-01 1 15546138 15546138 C T TMEM51 Missense_Mutation p.P221S 0.42 tolerated(0.37) benign(0.039) TCGA-18-3409-01 1 155644852 155644852 G A YY1AP1 Silent p.A258A 0.56 TCGA-18-3409-01 1 155883947 155883947 C T KIAA0907 Missense_Mutation p.A604T 0.51 tolerated_low_confidence(0.15) possibly_damaging(0.538) TCGA-18-3409-01 1 155989841 155989841 G A SSR2 Silent p.L40L 0.19 TCGA-18-3409-01 1 156006680 156006680 G A UBQLN4 3'UTR 0.42 TCGA-18-3409-01 1 156006681 156006681 G A UBQLN4 3'UTR 0.42 TCGA-18-3409-01 1 156011382 156011382 G A UBQLN4 Missense_Mutation p.S516F 0.26 deleterious(0.01) possibly_damaging(0.598) TCGA-18-3409-01 1 156526478 156526478 G A IQGAP3 Silent p.H379H 0.30 TCGA-18-3409-01 1 156617450 156617450 G A BCAN Missense_Mutation p.G206D 0.29 deleterious(0) probably_damaging(0.997) TCGA-18-3409-01 1 156640228 156640228 C T NES Missense_Mutation p.G1251E 0.34 deleterious(0.04) benign(0.209) TCGA-18-3409-01 1 156834541 156834541 C T NTRK1 Silent p.L103L 0.21 TCGA-18-3409-01 1 157504586 157504586 G A FCRL5 Missense_Mutation p.S500F 0.37 deleterious(0) probably_damaging(0.997) TCGA-18-3409-01 1 157548574 157548574 G A FCRL4 Missense_Mutation p.S449L 0.50 tolerated(0.7) benign(0) TCGA-18-3409-01 1 157740377 157740377 C T FCRL2 Nonsense_Mutation p.W44* 0.39 TCGA-18-3409-01 1 158326590 158326590 C T CD1E Silent p.T357T 0.21 TCGA-18-3409-01 1 158390148 158390148 G A OR10K2 Missense_Mutation p.S170F 0.29 tolerated(0.05) possibly_damaging(0.79) TCGA-18-3409-01 1 158390491 158390491 G A OR10K2 Missense_Mutation p.H56Y 0.41 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 1 158435712 158435712 G A OR10K1 Missense_Mutation p.D121N 0.21 deleterious(0) possibly_damaging(0.834) TCGA-18-3409-01 1 158449910 158449910 C T OR10R2 Silent p.F81F 0.23 TCGA-18-3409-01 1 158517431 158517431 G A OR6Y1 Silent p.F155F 0.35 TCGA-18-3409-01 1 158532678 158532678 G A OR6P1 Silent p.S239S 0.42 TCGA-18-3409-01 1 158583513 158583513 C T SPTA1 Silent p.G2329G 0.28 TCGA-18-3409-01 1 158644457 158644457 C T SPTA1 Missense_Mutation p.R374Q 0.38 tolerated(0.05) possibly_damaging(0.871) TCGA-18-3409-01 1 158908261 158908261 C T PYHIN1 Missense_Mutation p.P114S 0.54 tolerated(0.44) benign(0.02) TCGA-18-3409-01 1 158913695 158913695 G A PYHIN1 Missense_Mutation p.R373Q 0.43 tolerated(0.52) benign(0.001) TCGA-18-3409-01 1 159683285 159683285 G A CRP 3'UTR 0.26 TCGA-18-3409-01 1 159683901 159683901 G A CRP Missense_Mutation p.P30L 0.19 deleterious(0.01) probably_damaging(1) TCGA-18-3409-01 1 159683902 159683902 G A CRP Missense_Mutation p.P30S 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-18-3409-01 1 159778967 159778967 G A FCRL6 Nonsense_Mutation p.W179* 0.28 TCGA-18-3409-01 1 159857720 159857720 C T CCDC19 Missense_Mutation p.E167K 0.38 tolerated(0.25) benign(0.371) TCGA-18-3409-01 1 15987280 15987280 C T RSC1A1 Missense_Mutation p.S306F 0.40 deleterious(0.03) possibly_damaging(0.865) TCGA-18-3409-01 1 159923180 159923180 C T SLAMF9 Missense_Mutation p.D104N 0.42 tolerated(0.06) possibly_damaging(0.463) TCGA-18-3409-01 1 160001449 160001449 T A PIGM Silent p.L27L 0.40 TCGA-18-3409-01 1 160011167 160011167 G A KCNJ10 3'UTR 0.53 TCGA-18-3409-01 1 160012275 160012275 T A KCNJ10 Missense_Mutation p.E16D 0.32 tolerated_low_confidence(0.64) benign(0) TCGA-18-3409-01 1 160062267 160062267 G A IGSF8 Missense_Mutation p.R511W 0.36 deleterious(0.01) probably_damaging(0.996) TCGA-18-3409-01 1 160124859 160124859 G A ATP1A4 Missense_Mutation p.E78K 0.21 tolerated(0.14) benign(0.002) TCGA-18-3409-01 1 160322955 160322955 C T NCSTN Silent p.A369A 0.11 TCGA-18-3409-01 1 160589610 160589610 C T SLAMF1 Missense_Mutation p.E274K 0.23 tolerated(0.06) possibly_damaging(0.46) TCGA-18-3409-01 1 16074105 16074105 C T TMEM82 Missense_Mutation p.S337F 0.20 deleterious(0.01) unknown(0) TCGA-18-3409-01 1 161043560 161043560 C T PVRL4 Missense_Mutation p.E395K 0.31 deleterious(0.01) possibly_damaging(0.717) TCGA-18-3409-01 1 161068494 161068494 G A KLHDC9 Missense_Mutation p.D57N 0.56 deleterious(0.01) probably_damaging(0.943) TCGA-18-3409-01 1 161135293 161135293 C T USP21 3'UTR 0.50 TCGA-18-3409-01 1 161135294 161135294 C T USP21 3'UTR 0.50 TCGA-18-3409-01 1 161161863 161161863 C T ADAMTS4 Silent p.R693R 0.40 TCGA-18-3409-01 1 161164011 161164011 C T ADAMTS4 Missense_Mutation p.G421E 0.22 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 1 161647496 161647496 C T FCGR2B 3'UTR 0.50 TCGA-18-3409-01 1 162482360 162482360 C T UHMK1 Missense_Mutation p.P307S 0.40 deleterious(0.02) benign(0.261) TCGA-18-3409-01 1 16261660 16261660 G A SPEN Silent p.P2975P 0.19 TCGA-18-3409-01 1 16261661 16261661 G A SPEN Missense_Mutation p.A2976T 0.21 benign(0.303) TCGA-18-3409-01 1 16261936 16261936 C T SPEN Silent p.F3067F 0.17 TCGA-18-3409-01 1 162745458 162745458 G A DDR2 Missense_Mutation p.E625K 0.18 deleterious(0) probably_damaging(1) TCGA-18-3409-01 1 163318799 163318799 G A NUF2 Missense_Mutation p.E397K 0.32 deleterious(0) possibly_damaging(0.791) TCGA-18-3409-01 1 16456870 16456870 C T EPHA2 Missense_Mutation p.M840I 0.47 deleterious(0.03) benign(0.094) TCGA-18-3409-01 1 16577480 16577480 G A FBXO42 Silent p.S613S 0.11 TCGA-18-3409-01 1 167097050 167097050 G A DUSP27 Silent p.G894G 0.23 TCGA-18-3409-01 1 168262467 168262467 C T TBX19 Missense_Mutation p.S185F 0.32 deleterious(0.02) probably_damaging(0.974) TCGA-18-3409-01 1 168262468 168262468 C T TBX19 Silent p.S185S 0.33 TCGA-18-3409-01 1 169267909 169267909 G A NME7 Missense_Mutation p.P178L 0.39 deleterious(0.01) possibly_damaging(0.776) TCGA-18-3409-01 1 16935187 16935187 G A NBPF1 5'UTR 0.15 TCGA-18-3409-01 1 169510270 169510270 C T F5 Missense_Mutation p.G1353D 0.35 tolerated_low_confidence(0.47) benign(0.003) TCGA-18-3409-01 1 16953656 16953656 G A CROCCP2 3'Flank 0.16 TCGA-18-3409-01 1 169586359 169586359 C T SELP Missense_Mutation p.D130N 0.25 deleterious(0) probably_damaging(1) TCGA-18-3409-01 1 170115283 170115283 C T METTL11B Missense_Mutation p.S12F 0.54 deleterious_low_confidence(0) possibly_damaging(0.653) TCGA-18-3409-01 1 170521499 170521499 C T GORAB Missense_Mutation p.P361S 0.35 tolerated_low_confidence(0.22) benign(0.015) TCGA-18-3409-01 1 170940962 170940962 C T MROH9 Missense_Mutation p.S185L 0.36 tolerated(0.36) benign(0.012) TCGA-18-3409-01 1 171293368 171293368 C T FMO4 Missense_Mutation p.A138V 0.36 tolerated(0.4) possibly_damaging(0.828) TCGA-18-3409-01 1 172538220 172538220 C T SUCO Missense_Mutation p.P265L 0.23 deleterious(0) possibly_damaging(0.493) TCGA-18-3409-01 1 17257888 17257888 G A CROCC Missense_Mutation p.E318K 0.30 probably_damaging(0.973) TCGA-18-3409-01 1 172634791 172634791 G A FASLG Missense_Mutation p.E161K 0.21 deleterious(0.03) benign(0.299) TCGA-18-3409-01 1 173526526 173526526 G A SLC9C2 Missense_Mutation p.P390S 0.46 tolerated(0.15) probably_damaging(1) TCGA-18-3409-01 1 173839578 173839578 C T ZBTB37 Missense_Mutation p.S72L 0.20 deleterious(0) possibly_damaging(0.753) TCGA-18-3409-01 1 173878828 173878828 A T SERPINC1 Missense_Mutation p.W339R 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-18-3409-01 1 173930262 173930262 G A RC3H1 Missense_Mutation p.P775S 0.42 tolerated(0.13) probably_damaging(0.998) TCGA-18-3409-01 1 174363266 174363266 C T RABGAP1L Nonsense_Mutation p.R565* 0.20 TCGA-18-3409-01 1 174363272 174363272 C T RABGAP1L Missense_Mutation p.L567F 0.42 deleterious(0) probably_damaging(0.984) TCGA-18-3409-01 1 175375791 175375791 G A TNR Silent p.I20I 0.39 TCGA-18-3409-01 1 176525760 176525760 G A PAPPA2 Missense_Mutation p.G101E 0.35 tolerated_low_confidence(0.32) benign(0.006) TCGA-18-3409-01 1 176526002 176526002 G A PAPPA2 Missense_Mutation p.E182K 0.27 tolerated_low_confidence(0.35) benign(0.001) TCGA-18-3409-01 1 176640121 176640121 G A PAPPA2 Silent p.V669V 0.18 TCGA-18-3409-01 1 176661375 176661375 C T PAPPA2 Missense_Mutation p.P849S 0.38 deleterious(0.03) probably_damaging(1) TCGA-18-3409-01 1 176709183 176709183 T A PAPPA2 Silent p.L1334L 0.21 TCGA-18-3409-01 1 176992577 176992577 G A ASTN1 Silent p.L467L 0.21 TCGA-18-3409-01 1 178820370 178820370 C T ANGPTL1 Missense_Mutation p.G457E 0.43 deleterious(0) probably_damaging(1) TCGA-18-3409-01 1 178820371 178820371 C A ANGPTL1 Nonsense_Mutation p.G457* 0.43 TCGA-18-3409-01 1 178822871 178822871 C T ANGPTL1 Missense_Mutation p.G292E 0.29 deleterious(0.02) possibly_damaging(0.85) TCGA-18-3409-01 1 179087825 179087825 G A ABL2 Nonsense_Mutation p.R374* 0.20 TCGA-18-3409-01 1 179414223 179414223 A T AXDND1 Missense_Mutation p.N561I 0.23 tolerated(0.12) benign(0.029) TCGA-18-3409-01 1 179520325 179520325 C T NPHS2 Missense_Mutation p.D379N 0.33 deleterious(0) probably_damaging(1) TCGA-18-3409-01 1 179659939 179659939 T A TDRD5 Nonsense_Mutation p.L990* 0.24 TCGA-18-3409-01 1 180166160 180166160 C T QSOX1 Silent p.H744H 0.40 TCGA-18-3409-01 1 181479711 181479711 G A CACNA1E Missense_Mutation p.R122Q 0.34 tolerated(0.1) benign(0.238) TCGA-18-3409-01 1 181702138 181702138 G A CACNA1E Silent p.T972T 0.35 TCGA-18-3409-01 1 181753905 181753905 G A CACNA1E Splice_Site p.X1860_splice 0.36 TCGA-18-3409-01 1 182636100 182636100 C T RGS8 Missense_Mutation p.G30E 0.24 tolerated(1) probably_damaging(0.936) TCGA-18-3409-01 1 183087213 183087213 C T LAMC1 Missense_Mutation p.P641L 0.25 tolerated(0.08) benign(0.424) TCGA-18-3409-01 1 183852930 183852930 C T RGL1 Silent p.P242P 0.25 TCGA-18-3409-01 1 184765127 184765127 C A FAM129A Missense_Mutation p.G591W 0.45 deleterious(0.01) probably_damaging(1) TCGA-18-3409-01 1 184853813 184853813 C T FAM129A Silent p.K185K 0.45 TCGA-18-3409-01 1 185267192 185267192 G A IVNS1ABP Missense_Mutation p.P635L 0.23 tolerated(0.06) benign(0.216) TCGA-18-3409-01 1 186039829 186039829 C T HMCN1 Silent p.T2693T 0.40 TCGA-18-3409-01 1 186277347 186277347 G A PRG4 Silent p.K832K 0.26 TCGA-18-3409-01 1 186300714 186300714 C T TPR Splice_Site p.X1869_splice 0.20 TCGA-18-3409-01 1 18661419 18661419 C T IGSF21 Silent p.P113P 0.20 TCGA-18-3409-01 1 18691905 18691905 G T IGSF21 Silent p.T243T 0.31 TCGA-18-3409-01 1 18692001 18692001 C T IGSF21 Silent p.P275P 0.22 TCGA-18-3409-01 1 192628569 192628569 G A RGS13 Missense_Mutation p.M132I 0.28 deleterious(0) probably_damaging(0.992) TCGA-18-3409-01 1 192628570 192628570 G A RGS13 Missense_Mutation p.E133K 0.28 deleterious(0.01) benign(0.307) TCGA-18-3409-01 1 196658568 196658568 C T CFH Missense_Mutation p.P328L 0.23 deleterious(0) possibly_damaging(0.855) TCGA-18-3409-01 1 196706613 196706613 C T CFH Missense_Mutation p.P869S 0.44 tolerated(0.15) possibly_damaging(0.543) TCGA-18-3409-01 1 196920100 196920100 G A CFHR2 Silent p.E124E 0.20 TCGA-18-3409-01 1 197059368 197059368 A T ASPM Missense_Mutation p.Y3263N 0.20 deleterious(0.01) probably_damaging(0.99) TCGA-18-3409-01 1 197099062 197099062 G A ASPM Missense_Mutation p.P871L 0.25 deleterious(0) possibly_damaging(0.839) TCGA-18-3409-01 1 197099063 197099063 G A ASPM Missense_Mutation p.P871S 0.26 deleterious(0) possibly_damaging(0.881) TCGA-18-3409-01 1 197297777 197297777 C T CRB1 Missense_Mutation p.P99L 0.24 tolerated(0.17) benign(0.02) TCGA-18-3409-01 1 197390651 197390651 G A CRB1 Missense_Mutation p.G565R 0.35 deleterious(0) probably_damaging(0.979) TCGA-18-3409-01 1 197404159 197404159 G A CRB1 Missense_Mutation p.D1056N 0.26 deleterious(0.04) possibly_damaging(0.452) TCGA-18-3409-01 1 198608387 198608387 T C PTPRC 5'UTR 0.33 TCGA-18-3409-01 1 198723441 198723441 C T PTPRC Missense_Mutation p.L1185F 0.23 deleterious(0) probably_damaging(0.992) TCGA-18-3409-01 1 20005462 20005462 G A HTR6 Silent p.L308L 0.50 TCGA-18-3409-01 1 20009544 20009544 C T TMCO4 Missense_Mutation p.G632R 0.45 deleterious_low_confidence(0.01) benign(0.441) TCGA-18-3409-01 1 200569565 200569565 C T KIF14 Missense_Mutation p.R740Q 0.40 tolerated(0.08) benign(0.003) TCGA-18-3409-01 1 200823942 200823942 C T CAMSAP2 Intron 0.17 TCGA-18-3409-01 1 202092462 202092462 C T GPR37L1 Missense_Mutation p.T124I 0.24 deleterious(0) possibly_damaging(0.838) TCGA-18-3409-01 1 202705412 202705412 C T KDM5B Missense_Mutation p.E1065K 0.15 tolerated(0.4) possibly_damaging(0.685) TCGA-18-3409-01 1 203317278 203317278 G A FMOD Missense_Mutation p.P41S 0.20 tolerated_low_confidence(0.41) benign(0.022) TCGA-18-3409-01 1 204393843 204393843 G A PIK3C2B 3'UTR 0.33 TCGA-18-3409-01 1 205068920 205068920 G A RBBP5 Silent p.I309I 0.29 TCGA-18-3409-01 1 205068922 205068922 T A RBBP5 Missense_Mutation p.I309F 0.30 deleterious(0.03) probably_damaging(0.986) TCGA-18-3409-01 1 205272892 205272892 C T NUAK2 Missense_Mutation p.D525N 0.46 tolerated(0.08) benign(0.013) TCGA-18-3409-01 1 205499823 205499823 C T CDK18 Silent p.F490F 0.21 TCGA-18-3409-01 1 205632640 205632640 G A SLC45A3 Silent p.S93S 0.36 TCGA-18-3409-01 1 207110615 207110615 G A PIGR Silent p.A290A 0.40 TCGA-18-3409-01 1 207140980 207140980 C T FCAMR Missense_Mutation p.G19E 0.19 deleterious_low_confidence(0) possibly_damaging(0.631) TCGA-18-3409-01 1 207262847 207262847 C T C4BPB 5'UTR 0.20 TCGA-18-3409-01 1 207307914 207307914 C T C4BPA Missense_Mutation p.P417L 0.29 deleterious(0.02) benign(0.401) TCGA-18-3409-01 1 207791529 207791529 G A CR1 Missense_Mutation p.G2335R 0.22 deleterious(0) probably_damaging(0.992) TCGA-18-3409-01 1 208212981 208212981 G A PLXNA2 Silent p.I1495I 0.36 TCGA-18-3409-01 1 209605512 209605512 C T MIR205HG Intron 0.30 TCGA-18-3409-01 1 20970992 20970992 G A PINK1 Silent p.K262K 0.24 TCGA-18-3409-01 1 209935985 209935985 G A TRAF3IP3 Silent p.K157K 0.28 TCGA-18-3409-01 1 21014322 21014322 C T KIF17 Silent p.K499K 0.40 TCGA-18-3409-01 1 2105397 2105397 C T PRKCZ Silent p.S449S 0.49 TCGA-18-3409-01 1 211961039 211961039 G A LPGAT1 Missense_Mutation p.H130Y 0.24 tolerated(0.46) possibly_damaging(0.517) TCGA-18-3409-01 1 212800032 212800032 G A FAM71A 3'UTR 0.18 TCGA-18-3409-01 1 214171001 214171001 C T PROX1 Missense_Mutation p.P375S 0.18 tolerated(0.29) benign(0.068) TCGA-18-3409-01 1 215821889 215821889 G A USH2A Missense_Mutation p.P4855S 0.45 probably_damaging(0.993) TCGA-18-3409-01 1 215955428 215955428 G A USH2A Nonsense_Mutation p.Q3566* 0.22 TCGA-18-3409-01 1 215960216 215960216 C T USH2A Missense_Mutation p.E3395K 0.26 benign(0.008) TCGA-18-3409-01 1 216595731 216595731 G A USH2A 5'UTR 0.50 TCGA-18-3409-01 1 21889736 21889736 G A ALPL Missense_Mutation p.G144E 0.21 deleterious(0.03) probably_damaging(0.999) TCGA-18-3409-01 1 21889737 21889737 G A ALPL Silent p.G144G 0.23 TCGA-18-3409-01 1 220384317 220384317 G A RAB3GAP2 Silent p.I138I 0.26 TCGA-18-3409-01 1 222712088 222712088 G A HHIPL2 Silent p.G493G 0.16 TCGA-18-3409-01 1 222742992 222742992 C T TAF1A Missense_Mutation p.D252N 0.38 tolerated(0.15) possibly_damaging(0.785) TCGA-18-3409-01 1 222742994 222742994 C T TAF1A Missense_Mutation p.G251E 0.40 tolerated(0.61) benign(0.125) TCGA-18-3409-01 1 222801364 222801364 A - MIA3 Frame_Shift_Del p.E270Kfs*2 0.25 TCGA-18-3409-01 1 223178588 223178588 C T DISP1 Silent p.G1283G 0.36 TCGA-18-3409-01 1 225607146 225607146 G A LBR Silent p.F153F 0.23 TCGA-18-3409-01 1 227921573 227921573 C T SNAP47 5'Flank 0.33 TCGA-18-3409-01 1 228333716 228333716 C T GUK1 Intron 0.49 TCGA-18-3409-01 1 228402727 228402727 C T OBSCN Nonsense_Mutation p.Q586* 0.32 TCGA-18-3409-01 1 228479641 228479641 C T OBSCN Missense_Mutation p.A3890V 0.32 possibly_damaging(0.669) TCGA-18-3409-01 1 228509746 228509746 C T OBSCN Silent p.A6025A 0.25 TCGA-18-3409-01 1 228553854 228553854 G A OBSCN Silent p.E7338E 0.23 TCGA-18-3409-01 1 228645439 228645439 G A HIST3H2A Missense_Mutation p.P27L 0.25 deleterious_low_confidence(0) possibly_damaging(0.848) TCGA-18-3409-01 1 22924242 22924242 C T EPHA8 Silent p.A668A 0.46 TCGA-18-3409-01 1 22965797 22965797 G A C1QA Missense_Mutation p.G212D 0.17 tolerated(0.16) benign(0.224) TCGA-18-3409-01 1 229663027 229663027 G A ABCB10 Silent p.I558I 0.32 TCGA-18-3409-01 1 229676480 229676480 C T ABCB10 Missense_Mutation p.G359E 0.24 deleterious(0) probably_damaging(0.944) TCGA-18-3409-01 1 229676481 229676481 C T ABCB10 Missense_Mutation p.G359R 0.25 deleterious(0) probably_damaging(0.972) TCGA-18-3409-01 1 22987772 22987772 G A C1QB Missense_Mutation p.G219R 0.41 deleterious(0) possibly_damaging(0.616) TCGA-18-3409-01 1 230827218 230827218 C T COG2 Missense_Mutation p.P675S 0.14 tolerated(0.69) benign(0.001) TCGA-18-3409-01 1 231069594 231069594 G A TTC13 Missense_Mutation p.S305F 0.46 deleterious(0.03) possibly_damaging(0.673) TCGA-18-3409-01 1 23107970 23107970 C T EPHB2 Missense_Mutation p.P40S 0.48 tolerated(1) benign(0.002) TCGA-18-3409-01 1 233150490 233150490 G A PCNXL2 Missense_Mutation p.P1625S 0.35 tolerated(0.16) benign(0.027) TCGA-18-3409-01 1 235324634 235324634 C T RBM34 5'UTR 0.26 TCGA-18-3409-01 1 235967923 235967923 G A LYST Missense_Mutation p.L1146F 0.37 tolerated(0.1) probably_damaging(0.996) TCGA-18-3409-01 1 236646809 236646809 C T EDARADD 3'Flank 0.23 TCGA-18-3409-01 1 237540665 237540665 G A RYR2 Missense_Mutation p.R169Q 0.44 benign(0.316) TCGA-18-3409-01 1 237659980 237659980 G A RYR2 Missense_Mutation p.E711K 0.33 possibly_damaging(0.539) TCGA-18-3409-01 1 237777985 237777985 G A RYR2 Missense_Mutation p.E1853K 0.21 benign(0.039) TCGA-18-3409-01 1 240071961 240071961 A C CHRM3 Missense_Mutation p.K404Q 0.44 tolerated(0.44) benign(0.016) TCGA-18-3409-01 1 240370099 240370099 G A FMN2 Missense_Mutation p.E663K 0.22 unknown(0) TCGA-18-3409-01 1 240371850 240371850 C T FMN2 Silent p.L1246L 0.23 TCGA-18-3409-01 1 240371851 240371851 C T FMN2 Missense_Mutation p.P1247S 0.26 benign(0.001) TCGA-18-3409-01 1 240497239 240497239 T A FMN2 Missense_Mutation p.F1546Y 0.26 possibly_damaging(0.613) TCGA-18-3409-01 1 241815802 241815802 G A WDR64 Missense_Mutation p.E6K 0.21 tolerated_low_confidence(0.18) benign(0.002) TCGA-18-3409-01 1 241886653 241886653 G A WDR64 Missense_Mutation p.G360E 0.22 deleterious(0.04) probably_damaging(1) TCGA-18-3409-01 1 241953957 241953957 G A WDR64 Missense_Mutation p.E976K 0.14 tolerated(0.32) benign(0.11) TCGA-18-3409-01 1 24201817 24201817 G A CNR2 Silent p.F97F 0.38 TCGA-18-3409-01 1 242042543 242042543 A C EXO1 Missense_Mutation p.E669D 0.36 tolerated(0.16) benign(0.013) TCGA-18-3409-01 1 242253243 242253243 C T PLD5 Silent p.P508P 0.27 TCGA-18-3409-01 1 243809233 243809233 C T AKT3 Missense_Mutation p.E131K 0.35 tolerated(0.53) benign(0.097) TCGA-18-3409-01 1 24401903 24401903 G A MYOM3 Missense_Mutation p.P922S 0.22 tolerated(0.2) possibly_damaging(0.688) TCGA-18-3409-01 1 24448054 24448054 G A IL22RA1 Silent p.S322S 0.26 TCGA-18-3409-01 1 24663599 24663599 C T GRHL3 Missense_Mutation p.S215F 0.30 deleterious(0.03) possibly_damaging(0.883) TCGA-18-3409-01 1 246922380 246922380 C T SCCPDH Missense_Mutation p.P247L 0.26 deleterious(0.02) possibly_damaging(0.612) TCGA-18-3409-01 1 247264612 247264612 G A ZNF669 Silent p.I153I 0.40 TCGA-18-3409-01 1 247607969 247607969 C T NLRP3 Missense_Mutation p.L953F 0.35 tolerated(0.05) probably_damaging(0.953) TCGA-18-3409-01 1 247752441 247752441 C T OR2G2 Silent p.F260F 0.42 TCGA-18-3409-01 1 247835822 247835822 G A OR13G1 Silent p.F174F 0.16 TCGA-18-3409-01 1 247920818 247920818 C T OR1C1 Missense_Mutation p.M297I 0.25 tolerated(0.26) benign(0.024) TCGA-18-3409-01 1 247921615 247921615 G A OR1C1 Missense_Mutation p.L32F 0.16 tolerated(0.09) benign(0.008) TCGA-18-3409-01 1 247978121 247978121 C T OR14A16 Missense_Mutation p.G304E 0.26 tolerated(0.96) benign(0.017) TCGA-18-3409-01 1 247978721 247978721 G A OR14A16 Missense_Mutation p.S104F 0.48 tolerated(1) benign(0.001) TCGA-18-3409-01 1 248058951 248058951 C T OR2W3 Silent p.P21P 0.36 TCGA-18-3409-01 1 248112162 248112162 G A OR2L8 Translation_Start_Site p.M1? 0.16 deleterious(0) benign(0.221) TCGA-18-3409-01 1 248112240 248112240 C T OR2L8 Silent p.F27F 0.29 TCGA-18-3409-01 1 248112840 248112840 G A OR2L8 Missense_Mutation p.M227I 0.28 deleterious(0.05) benign(0.289) TCGA-18-3409-01 1 248202092 248202092 C T OR2L2 Missense_Mutation p.H175Y 0.17 deleterious(0.01) possibly_damaging(0.739) TCGA-18-3409-01 1 248224130 248224130 C T OR2L3 Silent p.F49F 0.23 TCGA-18-3409-01 1 248224427 248224427 G A OR2L3 Nonsense_Mutation p.W148* 0.27 TCGA-18-3409-01 1 248263533 248263533 C T OR2L13 Missense_Mutation p.P286S 0.38 deleterious(0.01) probably_damaging(1) TCGA-18-3409-01 1 248343802 248343802 G A OR2M2 Missense_Mutation p.R172Q 0.38 tolerated(0.12) benign(0.06) TCGA-18-3409-01 1 248366433 248366433 C T OR2M3 Missense_Mutation p.P22S 0.42 tolerated(0.18) benign(0.126) TCGA-18-3409-01 1 248436733 248436733 G A OR2T33 Silent p.L128L 0.09 TCGA-18-3409-01 1 248436828 248436828 C T OR2T33 Missense_Mutation p.V97M 0.09 tolerated(0.23) benign(0.002) TCGA-18-3409-01 1 248437113 248437113 C T OR2T33 Missense_Mutation p.E2K 0.42 deleterious(0.03) benign(0.019) TCGA-18-3409-01 1 248458687 248458687 G A OR2T12 Missense_Mutation p.S65F 0.59 deleterious(0) probably_damaging(0.98) TCGA-18-3409-01 1 248486965 248486965 C T OR2M7 Missense_Mutation p.M302I 0.36 deleterious(0.01) benign(0.001) TCGA-18-3409-01 1 248512233 248512233 C T OR14C36 Missense_Mutation p.L53F 0.24 deleterious(0.03) possibly_damaging(0.452) TCGA-18-3409-01 1 248525368 248525368 C T OR2T4 Silent p.L162L 0.28 TCGA-18-3409-01 1 24861622 24861622 C T RCAN3 Missense_Mutation p.P194L 0.18 deleterious(0) probably_damaging(1) TCGA-18-3409-01 1 248616386 248616386 G A OR2T2 Silent p.L96L 0.10 TCGA-18-3409-01 1 248616613 248616613 C T OR2T2 Missense_Mutation p.S172F 0.20 deleterious(0.03) probably_damaging(0.961) TCGA-18-3409-01 1 248685273 248685273 C T OR2G6 Missense_Mutation p.S109L 0.24 deleterious(0) possibly_damaging(0.815) TCGA-18-3409-01 1 248789647 248789647 G A OR2T11 Silent p.S261S 0.68 TCGA-18-3409-01 1 248789953 248789953 G A OR2T11 Silent p.I159I 0.84 TCGA-18-3409-01 1 24993329 24993329 C T SRRM1 Missense_Mutation p.S551F 0.23 benign(0.184) TCGA-18-3409-01 1 2527475 2527475 C T MMEL1 Silent p.E491E 0.39 TCGA-18-3409-01 1 25572955 25572955 G A C1orf63 Missense_Mutation p.P167L 0.09 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 1 26369942 26369942 A G SLC30A2 Silent p.I173I 0.17 TCGA-18-3409-01 1 26596025 26596025 C T CEP85 Silent p.T523T 0.18 TCGA-18-3409-01 1 27100302 27100302 C T ARID1A Silent p.S1338S 0.43 TCGA-18-3409-01 1 27106700 27106700 C T ARID1A Missense_Mutation p.S2104F 0.28 probably_damaging(0.961) TCGA-18-3409-01 1 27217599 27217599 G A GPATCH3 Missense_Mutation p.L494F 0.44 deleterious(0.02) possibly_damaging(0.854) TCGA-18-3409-01 1 27278630 27278630 C T C1orf172 Nonsense_Mutation p.W81* 0.33 TCGA-18-3409-01 1 28282619 28282619 G A SMPDL3B Intron 0.51 TCGA-18-3409-01 1 2938400 2938400 G A ACTRT2 Silent p.E50E 0.45 TCGA-18-3409-01 1 31437699 31437699 G A PUM1 Silent p.D715D 0.14 TCGA-18-3409-01 1 32051059 32051059 G A TINAGL1 Missense_Mutation p.E356K 0.35 deleterious(0) probably_damaging(1) TCGA-18-3409-01 1 32626221 32626221 C T KPNA6 Silent p.V188V 0.38 TCGA-18-3409-01 1 32680440 32680440 G A DCDC2B Missense_Mutation p.E253K 0.37 tolerated(0.23) benign(0.038) TCGA-18-3409-01 1 32687979 32687979 G A EIF3I 5'UTR 0.33 TCGA-18-3409-01 1 33134917 33134917 C T RBBP4 Missense_Mutation p.P283S 0.31 deleterious(0) possibly_damaging(0.846) TCGA-18-3409-01 1 33236902 33236902 C T KIAA1522 Missense_Mutation p.P708S 0.44 tolerated_low_confidence(0.18) unknown(0) TCGA-18-3409-01 1 34066511 34066511 G T CSMD2 Missense_Mutation p.F2272L 0.48 deleterious(0.02) probably_damaging(0.955) TCGA-18-3409-01 1 34330140 34330140 G A HMGB4 Silent p.P116P 0.27 TCGA-18-3409-01 1 35227199 35227199 C T GJB4 Missense_Mutation p.S115F 0.30 deleterious(0.04) benign(0.092) TCGA-18-3409-01 1 36020100 36020100 C T KIAA0319L 5'UTR 0.34 TCGA-18-3409-01 1 36439031 36439031 C T AGO3 Silent p.L193L 0.36 TCGA-18-3409-01 1 36785735 36785735 T G SH3D21 Missense_Mutation p.S491A 0.13 tolerated(0.67) possibly_damaging(0.528) TCGA-18-3409-01 1 3679830 3679830 G A CCDC27 Silent p.E371E 0.27 TCGA-18-3409-01 1 3753130 3753130 C T CEP104 Missense_Mutation p.E416K 0.13 deleterious(0.01) possibly_damaging(0.856) TCGA-18-3409-01 1 38397516 38397516 G A INPP5B Intron 0.14 TCGA-18-3409-01 1 38409561 38409561 A T INPP5B Missense_Mutation p.F53I 0.14 tolerated(0.12) probably_damaging(0.942) TCGA-18-3409-01 1 39361688 39361688 C T RHBDL2 Missense_Mutation p.G188R 0.47 deleterious(0) probably_damaging(1) TCGA-18-3409-01 1 39800237 39800237 G A MACF1 Intron 0.21 TCGA-18-3409-01 1 39903523 39903523 C T MACF1 Silent p.I3962I 0.14 TCGA-18-3409-01 1 40131857 40131857 G A NT5C1A Missense_Mutation p.R63C 0.41 deleterious(0) possibly_damaging(0.586) TCGA-18-3409-01 1 40929061 40929061 C T ZFP69B Missense_Mutation p.H469Y 0.38 deleterious(0.02) benign(0.002) TCGA-18-3409-01 1 41285134 41285134 G T KCNQ4 Missense_Mutation p.W275L 0.36 deleterious(0) probably_damaging(0.941) TCGA-18-3409-01 1 41466735 41466737 CGC TG CTPS1 Frame_Shift_Del p.S347Lfs*54 0.32 TCGA-18-3409-01 1 42047565 42047565 G C HIVEP3 Silent p.P968P 0.12 TCGA-18-3409-01 1 42047975 42047975 G A HIVEP3 Missense_Mutation p.P832S 0.17 benign(0.424) TCGA-18-3409-01 1 43300733 43300733 C T ERMAP Missense_Mutation p.P153L 0.35 tolerated(0.27) benign(0.08) TCGA-18-3409-01 1 43778105 43778105 G A TIE1 Missense_Mutation p.G587E 0.48 tolerated(0.4) possibly_damaging(0.771) TCGA-18-3409-01 1 43898414 43898414 C T SZT2 Missense_Mutation p.P1792L 0.24 tolerated(0.39) probably_damaging(0.943) TCGA-18-3409-01 1 44201918 44201918 C T ST3GAL3 5'UTR 0.29 TCGA-18-3409-01 1 44422081 44422081 C T IPO13 Missense_Mutation p.T304I 0.38 tolerated(0.06) benign(0.024) TCGA-18-3409-01 1 44422082 44422082 C T IPO13 Silent p.T304T 0.38 TCGA-18-3409-01 1 44446940 44446940 C T B4GALT2 Silent p.A65A 0.20 TCGA-18-3409-01 1 45213357 45213357 C T KIF2C Missense_Mutation p.P101S 0.20 deleterious(0.01) probably_damaging(1) TCGA-18-3409-01 1 45243440 45243440 C T RPS8 Silent p.G122G 0.13 TCGA-18-3409-01 1 45243441 45243441 C T RPS8 Missense_Mutation p.R123C 0.13 tolerated(0.12) benign(0.052) TCGA-18-3409-01 1 45347342 45347342 T A EIF2B3 Silent p.S242S 0.43 TCGA-18-3409-01 1 46497954 46497954 C T MAST2 Missense_Mutation p.L1098F 0.36 deleterious_low_confidence(0.01) benign(0.008) TCGA-18-3409-01 1 46746910 46746910 G A LRRC41 Missense_Mutation p.P548L 0.22 deleterious(0) possibly_damaging(0.851) TCGA-18-3409-01 1 47504382 47504382 G A CYP4X1 Missense_Mutation p.D276N 0.37 deleterious(0.05) benign(0.076) TCGA-18-3409-01 1 48703480 48703480 C T SLC5A9 Silent p.L499L 0.44 TCGA-18-3409-01 1 48713068 48713068 G A SLC5A9 Silent p.P658P 0.55 TCGA-18-3409-01 1 52769498 52769498 C T ZFYVE9 Silent p.F1113F 0.33 TCGA-18-3409-01 1 53544160 53544160 G A PODN Silent p.A374A 0.20 TCGA-18-3409-01 1 53547779 53547779 G A PODN Silent p.G644G 0.32 TCGA-18-3409-01 1 54534537 54534537 C T TCEANC2 Missense_Mutation p.P71S 0.11 deleterious(0) probably_damaging(1) TCGA-18-3409-01 1 54670798 54670798 G A MRPL37 Missense_Mutation p.E152K 0.42 tolerated(0.05) possibly_damaging(0.871) TCGA-18-3409-01 1 55145664 55145664 C T MROH7 Missense_Mutation p.S776F 0.18 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 1 56962296 56962296 G A PPAP2B Missense_Mutation p.A288V 0.38 tolerated(0.18) benign(0.018) TCGA-18-3409-01 1 60499186 60499186 C T C1orf87 Missense_Mutation p.E331K 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-18-3409-01 1 6202664 6202664 G A CHD5 Missense_Mutation p.P682L 0.50 tolerated(0.44) benign(0.042) TCGA-18-3409-01 1 6212538 6212538 C T CHD5 Silent p.G268G 0.35 TCGA-18-3409-01 1 62545165 62545165 C T INADL Missense_Mutation p.S1390F 0.42 tolerated(0.08) benign(0.344) TCGA-18-3409-01 1 62550229 62550229 C T INADL Missense_Mutation p.P1429L 0.50 deleterious(0) possibly_damaging(0.757) TCGA-18-3409-01 1 62747221 62747221 C T KANK4 Missense_Mutation p.A6T 0.43 deleterious(0.01) benign(0.002) TCGA-18-3409-01 1 62943401 62943401 G A DOCK7 Silent p.T1837T 0.35 TCGA-18-3409-01 1 63113907 63113907 G A DOCK7 Missense_Mutation p.S201L 0.34 tolerated(0.54) benign(0.015) TCGA-18-3409-01 1 63920139 63920139 C T ITGB3BP Silent p.L152L 0.41 TCGA-18-3409-01 1 64089186 64089186 C T PGM1 Missense_Mutation p.P19S 0.33 deleterious(0.02) benign(0.266) TCGA-18-3409-01 1 65131840 65131840 C T CACHD1 Missense_Mutation p.H742Y 0.33 tolerated(1) benign(0.005) TCGA-18-3409-01 1 65310570 65310570 C T JAK1 Silent p.E706E 0.12 TCGA-18-3409-01 1 67099798 67099798 C T SGIP1 Intron 0.20 TCGA-18-3409-01 1 67292639 67292639 C A WDR78 Nonsense_Mutation p.E735* 0.25 TCGA-18-3409-01 1 67792445 67792445 C T IL12RB2 Missense_Mutation p.S131F 0.36 deleterious(0) possibly_damaging(0.548) TCGA-18-3409-01 1 67833507 67833507 G A IL12RB2 Splice_Site p.X420_splice 0.22 TCGA-18-3409-01 1 70505069 70505069 G A LRRC7 Missense_Mutation p.G1150R 0.34 deleterious(0.03) possibly_damaging(0.886) TCGA-18-3409-01 1 72076747 72076747 C T NEGR1 Silent p.V250V 0.18 TCGA-18-3409-01 1 74492584 74492584 G A LRRIQ3 Silent p.A596A 0.36 TCGA-18-3409-01 1 74670360 74670360 C T FPGT Missense_Mutation p.P210L 0.18 deleterious(0.01) benign(0.259) TCGA-18-3409-01 1 75072544 75072544 C T C1orf173 Silent p.P410P 0.15 TCGA-18-3409-01 1 76344772 76344772 A T MSH4 Missense_Mutation p.I546L 0.32 tolerated(0.71) benign(0.001) TCGA-18-3409-01 1 76365359 76365359 G A MSH4 Missense_Mutation p.E863K 0.30 tolerated(0.46) benign(0.016) TCGA-18-3409-01 1 76877855 76877855 C T ST6GALNAC3 Nonsense_Mutation p.R126* 0.29 TCGA-18-3409-01 1 76877969 76877969 G A ST6GALNAC3 Missense_Mutation p.D164N 0.24 probably_damaging(0.993) TCGA-18-3409-01 1 7700505 7700505 G A CAMTA1 Missense_Mutation p.E186K 0.46 deleterious(0.02) probably_damaging(0.986) TCGA-18-3409-01 1 7724082 7724082 C T CAMTA1 Missense_Mutation p.P492L 0.30 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 1 78184286 78184286 G A USP33 Missense_Mutation p.P609S 0.32 deleterious(0) possibly_damaging(0.861) TCGA-18-3409-01 1 79107150 79107150 C T IFI44L Missense_Mutation p.P394S 0.23 tolerated(0.08) possibly_damaging(0.858) TCGA-18-3409-01 1 79128453 79128453 C T IFI44 Missense_Mutation p.S393F 0.36 deleterious(0) possibly_damaging(0.679) TCGA-18-3409-01 1 79470895 79470895 G A ELTD1 Missense_Mutation p.S11F 0.55 deleterious_low_confidence(0) benign(0.043) TCGA-18-3409-01 1 8418356 8418356 G A RERE Silent p.P1413P 0.43 TCGA-18-3409-01 1 84880230 84880230 G A DNASE2B Missense_Mutation p.M255I 0.21 tolerated(0.23) benign(0.009) TCGA-18-3409-01 1 84880305 84880305 C T DNASE2B Silent p.S280S 0.24 TCGA-18-3409-01 1 85486956 85486956 G A MCOLN3 Missense_Mutation p.R442C 0.30 deleterious(0) probably_damaging(0.997) TCGA-18-3409-01 1 86590982 86590982 T A COL24A1 Missense_Mutation p.N346I 0.37 tolerated(0.06) possibly_damaging(0.626) TCGA-18-3409-01 1 879424 879424 C T SAMD11 Missense_Mutation p.S646F 0.38 deleterious(0) probably_damaging(0.966) TCGA-18-3409-01 1 879425 879425 C T SAMD11 Silent p.S646S 0.38 TCGA-18-3409-01 1 891504 891504 G A NOC2L Missense_Mutation p.A193V 0.37 tolerated(0.25) benign(0.006) TCGA-18-3409-01 1 91843989 91843989 G A HFM1 Nonsense_Mutation p.Q403* 0.24 TCGA-18-3409-01 1 92185653 92185653 G A TGFBR3 Missense_Mutation p.P404S 0.50 tolerated(0.14) benign(0.244) TCGA-18-3409-01 1 92498145 92498145 C T EPHX4 Silent p.F105F 0.33 TCGA-18-3409-01 1 92979373 92979373 G A EVI5 Missense_Mutation p.P758L 0.42 tolerated_low_confidence(0.37) benign(0.022) TCGA-18-3409-01 1 93724345 93724345 C T CCDC18 Missense_Mutation p.S1249F 0.42 deleterious(0) probably_damaging(0.968) TCGA-18-3409-01 1 9642481 9642481 C T SLC25A33 Silent p.I296I 0.34 TCGA-18-3409-01 1 97547898 97547898 A G DPYD Silent p.D965D 0.32 TCGA-18-3409-01 1 98015267 98015267 C T DPYD Missense_Mutation p.R458K 0.26 tolerated(0.64) benign(0) TCGA-18-3409-01 1 9804666 9804666 G A CLSTN1 Missense_Mutation p.P341S 0.50 deleterious(0.01) possibly_damaging(0.589) TCGA-18-3409-01 1 98058779 98058779 C T DPYD Missense_Mutation p.E375K 0.43 tolerated(0.08) possibly_damaging(0.89) TCGA-18-3409-01 1 99150492 99150492 C T SNX7 Missense_Mutation p.P78S 0.37 tolerated(0.11) probably_damaging(1) TCGA-18-3409-01 20 1115883 1115883 C T PSMF1 Missense_Mutation p.T162I 0.54 tolerated(0.23) benign(0.001) TCGA-18-3409-01 20 1115884 1115884 C T PSMF1 Silent p.T162T 0.54 TCGA-18-3409-01 20 1145091 1145091 C T PSMF1 Silent p.P245P 0.32 TCGA-18-3409-01 20 1277021 1277021 C T SNPH Silent p.A2A 0.42 TCGA-18-3409-01 20 13846116 13846116 G A SEL1L2 Intron 0.37 TCGA-18-3409-01 20 18123429 18123429 C T CSRP2BP Missense_Mutation p.S42F 0.41 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-18-3409-01 20 18123430 18123430 C A CSRP2BP Silent p.S42S 0.41 TCGA-18-3409-01 20 18505185 18505185 C T SEC23B Missense_Mutation p.P159S 0.39 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 20 18794465 18794465 G A SCP2D1 Nonsense_Mutation p.W2* 0.35 TCGA-18-3409-01 20 20071504 20071504 G A C20orf26 Missense_Mutation p.D195N 0.32 deleterious(0.03) benign(0.256) TCGA-18-3409-01 20 20571878 20571878 G A RALGAPA2 Missense_Mutation p.L762F 0.32 tolerated(0.58) benign(0.001) TCGA-18-3409-01 20 21349207 21349207 C T XRN2 Nonsense_Mutation p.Q855* 0.36 TCGA-18-3409-01 20 23472424 23472424 C T CST8 Silent p.A40A 0.28 TCGA-18-3409-01 20 23472433 23472433 C T CST8 Silent p.A43A 0.27 TCGA-18-3409-01 20 23856875 23856875 G A CST5 Missense_Mutation p.P127S 0.27 deleterious(0.05) benign(0.36) TCGA-18-3409-01 20 24952185 24952185 C T APMAP Missense_Mutation p.G150E 0.34 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 20 25198193 25198193 G A ENTPD6 Missense_Mutation p.R285K 0.35 tolerated(0.44) benign(0.021) TCGA-18-3409-01 20 25198194 25198194 G A ENTPD6 Silent p.R285R 0.37 TCGA-18-3409-01 20 25206255 25206255 C T ENTPD6 3'UTR 0.37 TCGA-18-3409-01 20 25667166 25667166 G A ZNF337 5'UTR 0.38 TCGA-18-3409-01 20 29891155 29891155 G A DEFB116 Nonsense_Mutation p.Q57* 0.34 TCGA-18-3409-01 20 29965061 29965061 T A DEFB118 3'Flank 0.36 TCGA-18-3409-01 20 30070255 30070255 G A REM1 Missense_Mutation p.A197T 0.20 tolerated(0.24) benign(0.065) TCGA-18-3409-01 20 30450427 30450427 T C DUSP15 Missense_Mutation p.N128D 0.24 deleterious(0) possibly_damaging(0.688) TCGA-18-3409-01 20 30584351 30584351 G A XKR7 Silent p.L277L 0.45 TCGA-18-3409-01 20 30584352 30584352 G A XKR7 Missense_Mutation p.A278T 0.43 deleterious(0) possibly_damaging(0.627) TCGA-18-3409-01 20 31021323 31021323 C T ASXL1 Missense_Mutation p.S441F 0.41 deleterious(0) possibly_damaging(0.698) TCGA-18-3409-01 20 31023865 31023865 C T ASXL1 Missense_Mutation p.P1117L 0.34 deleterious(0.03) benign(0.255) TCGA-18-3409-01 20 31023866 31023866 C T ASXL1 Silent p.P1117P 0.33 TCGA-18-3409-01 20 31611441 31611441 G A BPIFB2 3'UTR 0.55 TCGA-18-3409-01 20 31659915 31659915 G A BPIFB3 Silent p.S422S 0.44 TCGA-18-3409-01 20 31757060 31757060 G A BPIFA2 Missense_Mutation p.E37K 0.34 tolerated(1) benign(0) TCGA-18-3409-01 20 31763316 31763316 G A BPIFA2 Missense_Mutation p.G172R 0.39 tolerated(0.16) possibly_damaging(0.614) TCGA-18-3409-01 20 32340998 32340998 C T ZNF341 Silent p.S170S 0.29 TCGA-18-3409-01 20 33067442 33067442 T A ITCH Missense_Mutation p.F597I 0.44 deleterious(0) probably_damaging(0.99) TCGA-18-3409-01 20 33330887 33330887 C T NCOA6 Missense_Mutation p.R1058K 0.46 benign(0.241) TCGA-18-3409-01 20 33449261 33449261 G A GGT7 Missense_Mutation p.S221F 0.27 tolerated(0.12) benign(0.004) TCGA-18-3409-01 20 33575706 33575706 G A MYH7B Missense_Mutation p.E511K 0.38 probably_damaging(0.998) TCGA-18-3409-01 20 33875038 33875038 G A FAM83C Missense_Mutation p.P515L 0.37 deleterious_low_confidence(0) possibly_damaging(0.548) TCGA-18-3409-01 20 34025560 34025560 C T GDF5 Missense_Mutation p.R50K 0.44 tolerated_low_confidence(0.17) benign(0) TCGA-18-3409-01 20 34219078 34219078 G A CPNE1 Silent p.S278S 0.39 TCGA-18-3409-01 20 35060414 35060414 C T DLGAP4 Silent p.N98N 0.30 TCGA-18-3409-01 20 35437024 35437024 G A SOGA1 Silent p.S902S 0.37 TCGA-18-3409-01 20 3543878 3543878 T A ATRN Missense_Mutation p.F552I 0.40 tolerated(0.08) benign(0.094) TCGA-18-3409-01 20 35521305 35521305 G A SAMHD1 3'UTR 0.24 TCGA-18-3409-01 20 3655426 3655426 C T ADAM33 Missense_Mutation p.G135E 0.43 deleterious(0) probably_damaging(0.995) TCGA-18-3409-01 20 3675063 3675063 C T SIGLEC1 Missense_Mutation p.D1021N 0.21 tolerated(0.29) benign(0.008) TCGA-18-3409-01 20 36856635 36856635 C G KIAA1755 Missense_Mutation p.D627H 0.53 tolerated(0.06) probably_damaging(0.937) TCGA-18-3409-01 20 37121775 37121775 G A RALGAPB Missense_Mutation p.R130K 0.27 deleterious(0.01) benign(0.325) TCGA-18-3409-01 20 37547313 37547313 C T PPP1R16B 3'UTR 0.21 TCGA-18-3409-01 20 3781422 3781422 G A CDC25B Silent p.R164R 0.50 TCGA-18-3409-01 20 389373 389373 C T RBCK1 5'UTR 0.67 TCGA-18-3409-01 20 391276 391276 C T RBCK1 Intron 0.43 TCGA-18-3409-01 20 40052232 40052232 G A CHD6 Silent p.S1485S 0.34 TCGA-18-3409-01 20 40126299 40126299 G A CHD6 Intron 0.62 TCGA-18-3409-01 20 40126300 40126300 G A CHD6 Intron 0.60 TCGA-18-3409-01 20 41419926 41419926 C T PTPRT Missense_Mutation p.G132E 0.30 deleterious(0) probably_damaging(0.996) TCGA-18-3409-01 20 42885898 42885898 G A GDAP1L1 Missense_Mutation p.E96K 0.44 tolerated(0.08) possibly_damaging(0.905) TCGA-18-3409-01 20 42907844 42907844 G A GDAP1L1 Silent p.R336R 0.31 TCGA-18-3409-01 20 43836056 43836056 C T SEMG1 Missense_Mutation p.P40S 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-18-3409-01 20 44163037 44163037 G A WFDC6 3'UTR 0.44 TCGA-18-3409-01 20 44277967 44277967 C T WFDC11 Missense_Mutation p.A58T 0.34 tolerated(0.66) benign(0.004) TCGA-18-3409-01 20 44472967 44472967 G A ACOT8 Missense_Mutation p.P194L 0.23 tolerated(0.31) benign(0) TCGA-18-3409-01 20 44506190 44506190 G A ZSWIM3 Missense_Mutation p.M331I 0.25 deleterious(0.03) probably_damaging(0.977) TCGA-18-3409-01 20 45133369 45133369 G A ZNF334 Missense_Mutation p.S11L 0.39 deleterious(0.01) probably_damaging(0.987) TCGA-18-3409-01 20 45633653 45633653 G A EYA2 Silent p.A76A 0.37 TCGA-18-3409-01 20 47710733 47710733 G A CSE1L Missense_Mutation p.G835E 0.30 deleterious(0.01) possibly_damaging(0.734) TCGA-18-3409-01 20 48497523 48497523 C T SLC9A8 Silent p.F423F 0.35 TCGA-18-3409-01 20 48497524 48497524 C T SLC9A8 Missense_Mutation p.R424W 0.34 deleterious(0) probably_damaging(0.995) TCGA-18-3409-01 20 48741588 48741588 G A TMEM189 Intron 0.42 TCGA-18-3409-01 20 49236648 49236648 G A FAM65C Silent p.S44S 0.30 TCGA-18-3409-01 20 49576168 49576168 C T MOCS3 Silent p.I263I 0.34 TCGA-18-3409-01 20 50406824 50406824 G A SALL4 Missense_Mutation p.P733L 0.34 tolerated(0.72) benign(0.002) TCGA-18-3409-01 20 50406825 50406825 G A SALL4 Missense_Mutation p.P733S 0.35 tolerated(0.82) benign(0.003) TCGA-18-3409-01 20 56227494 56227494 G A PMEPA1 Missense_Mutation p.P160L 0.25 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 20 57767367 57767367 G A ZNF831 Silent p.K431K 0.54 TCGA-18-3409-01 20 57768720 57768720 C T ZNF831 Silent p.S882S 0.35 TCGA-18-3409-01 20 57769121 57769121 G A ZNF831 Missense_Mutation p.G1016E 0.48 tolerated(0.3) benign(0.084) TCGA-18-3409-01 20 58475292 58475292 A G SYCP2 Silent p.V435V 0.33 TCGA-18-3409-01 20 5903242 5903242 A G CHGB Missense_Mutation p.E151G 0.52 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 20 5903364 5903364 G A CHGB Missense_Mutation p.G192R 0.23 deleterious(0.03) benign(0.272) TCGA-18-3409-01 20 5990442 5990442 C T CRLS1 Missense_Mutation p.P110S 0.30 deleterious(0) probably_damaging(1) TCGA-18-3409-01 20 5990443 5990443 C T CRLS1 Missense_Mutation p.P110L 0.30 deleterious(0) probably_damaging(1) TCGA-18-3409-01 20 6022121 6022121 C A LRRN4 Missense_Mutation p.E590D 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-18-3409-01 20 60470012 60470012 G A CDH4 Missense_Mutation p.G366E 0.37 deleterious(0) probably_damaging(1) TCGA-18-3409-01 20 60994776 60994776 C T RBBP8NL 5'UTR 0.41 TCGA-18-3409-01 20 61167762 61167762 C T C20orf166 Missense_Mutation p.P78S 0.24 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-18-3409-01 20 61430920 61430920 C T MRGBP Silent p.S180S 0.28 TCGA-18-3409-01 20 61430921 61430921 C T MRGBP Missense_Mutation p.R181W 0.29 deleterious(0.01) probably_damaging(0.985) TCGA-18-3409-01 20 61460130 61460130 G A COL9A3 Silent p.K305K 0.24 TCGA-18-3409-01 20 61467684 61467684 C T COL9A3 Missense_Mutation p.P516L 0.23 deleterious(0) probably_damaging(1) TCGA-18-3409-01 20 61598582 61598582 G A SLC17A9 Intron 0.29 TCGA-18-3409-01 20 61981026 61981026 C T CHRNA4 Silent p.K579K 0.33 TCGA-18-3409-01 20 61982311 61982311 C A CHRNA4 Missense_Mutation p.W151L 0.30 deleterious(0) probably_damaging(1) TCGA-18-3409-01 20 62198494 62198494 G A HELZ2 Silent p.F739F 0.24 TCGA-18-3409-01 20 62319071 62319071 C T RTEL1 Missense_Mutation p.L501F 0.50 deleterious(0) probably_damaging(1) TCGA-18-3409-01 20 62520563 62520563 C T TPD52L2 Missense_Mutation p.S189L 0.18 deleterious(0.01) benign(0.415) TCGA-18-3409-01 20 8862318 8862318 C T PLCB1 Missense_Mutation p.P1158L 0.30 deleterious(0.01) probably_damaging(0.96) TCGA-18-3409-01 20 8862319 8862319 C T PLCB1 Silent p.P1158P 0.30 TCGA-18-3409-01 20 9424652 9424652 G A PLCB4 Missense_Mutation p.R918K 0.27 tolerated(0.45) benign(0.001) TCGA-18-3409-01 21 10863054 10863054 G A IGHV1OR21-1 Missense_Mutation p.R117K 0.18 deleterious(0.04) possibly_damaging(0.508) TCGA-18-3409-01 21 10908843 10908843 G A TPTE Missense_Mutation p.S501F 0.14 deleterious(0.02) probably_damaging(0.989) TCGA-18-3409-01 21 10920086 10920086 G T TPTE Missense_Mutation p.Q390K 0.15 deleterious(0) possibly_damaging(0.783) TCGA-18-3409-01 21 10941939 10941939 C T TPTE Missense_Mutation p.G255E 0.08 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 21 11039088 11039088 C T BAGE2 RNA 0.04 TCGA-18-3409-01 21 11039112 11039112 T C BAGE2 RNA 0.06 TCGA-18-3409-01 21 15538721 15538721 C T LIPI Missense_Mutation p.G253E 0.25 deleterious(0) probably_damaging(1) TCGA-18-3409-01 21 16337376 16337376 G A NRIP1 Silent p.I1046I 0.21 TCGA-18-3409-01 21 17163870 17163870 C T USP25 Missense_Mutation p.P148S 0.30 deleterious(0.01) benign(0.092) TCGA-18-3409-01 21 19629007 19629007 G T CHODL Silent p.L87L 0.29 TCGA-18-3409-01 21 19775824 19775824 G A TMPRSS15 Missense_Mutation p.S39F 0.32 deleterious(0) possibly_damaging(0.863) TCGA-18-3409-01 21 22658606 22658606 G A NCAM2 Missense_Mutation p.E119K 0.44 tolerated(0.09) benign(0.125) TCGA-18-3409-01 21 31802915 31802915 G A KRTAP13-4 Missense_Mutation p.G108R 0.30 tolerated(0.06) possibly_damaging(0.873) TCGA-18-3409-01 21 31864251 31864251 C T KRTAP19-3 Missense_Mutation p.G9R 0.30 tolerated_low_confidence(0.78) unknown(0) TCGA-18-3409-01 21 31964882 31964882 G A KRTAP6-3 Missense_Mutation p.G33R 0.42 unknown(0) TCGA-18-3409-01 21 32007668 32007668 G A KRTAP20-2 Missense_Mutation p.G29D 0.19 unknown(0) TCGA-18-3409-01 21 32410528 32410528 G A KRTAP19-8 3'UTR 0.26 TCGA-18-3409-01 21 32638620 32638620 G A TIAM1 Silent p.L223L 0.39 TCGA-18-3409-01 21 33074193 33074193 G A SCAF4 Missense_Mutation p.P166S 0.15 benign(0.039) TCGA-18-3409-01 21 33371063 33371063 G A HUNK Missense_Mutation p.V571I 0.37 tolerated_low_confidence(1) benign(0) TCGA-18-3409-01 21 34053869 34053869 G A SYNJ1 Silent p.S469S 0.23 TCGA-18-3409-01 21 34113765 34113765 G A PAXBP1 Intron 0.35 TCGA-18-3409-01 21 34924260 34924260 C T SON Missense_Mutation p.S908L 0.26 benign(0.307) TCGA-18-3409-01 21 35208892 35208892 C T ITSN1 Missense_Mutation p.S1206F 0.35 deleterious(0.02) probably_damaging(0.924) TCGA-18-3409-01 21 35468224 35468224 C T SLC5A3 Missense_Mutation p.P243S 0.20 deleterious(0) probably_damaging(0.994) TCGA-18-3409-01 21 35468225 35468225 C T SLC5A3 Missense_Mutation p.P243L 0.19 deleterious(0) probably_damaging(0.994) TCGA-18-3409-01 21 37788602 37788602 C T CHAF1B Missense_Mutation p.P540S 0.31 deleterious_low_confidence(0.02) benign(0.424) TCGA-18-3409-01 21 37788673 37788673 C G CHAF1B 3'UTR 0.25 TCGA-18-3409-01 21 38858793 38858793 G A DYRK1A Missense_Mutation p.E181K 0.29 tolerated(0.14) benign(0.191) TCGA-18-3409-01 21 39086760 39086760 C T KCNJ6 Missense_Mutation p.E234K 0.29 deleterious(0) probably_damaging(0.987) TCGA-18-3409-01 21 41450784 41450784 C T DSCAM Missense_Mutation p.R1514K 0.35 tolerated(0.06) possibly_damaging(0.734) TCGA-18-3409-01 21 41710112 41710112 C T DSCAM Missense_Mutation p.E567K 0.31 tolerated(0.26) benign(0.155) TCGA-18-3409-01 21 41710113 41710113 C T DSCAM Silent p.K566K 0.28 TCGA-18-3409-01 21 42843869 42843869 C T TMPRSS2 Silent p.G350G 0.34 TCGA-18-3409-01 21 43496237 43496237 G A UMODL1 Nonsense_Mutation p.W67* 0.25 TCGA-18-3409-01 21 43496238 43496238 G A UMODL1 Nonsense_Mutation p.W67* 0.25 TCGA-18-3409-01 21 43547287 43547287 G T UMODL1 Silent p.T1283T 0.26 TCGA-18-3409-01 21 44108093 44108093 G A PDE9A Silent p.A69A 0.27 TCGA-18-3409-01 21 44190846 44190846 C A PDE9A Missense_Mutation p.P542T 0.31 deleterious(0) probably_damaging(0.98) TCGA-18-3409-01 21 44492175 44492175 C T CBS Nonsense_Mutation p.W43* 0.33 TCGA-18-3409-01 21 45173564 45173564 C T PDXK Silent p.L241L 0.33 TCGA-18-3409-01 21 45950965 45950965 G A TSPEAR Silent p.F198F 0.22 TCGA-18-3409-01 21 45953714 45953714 G A TSPEAR Silent p.F132F 0.25 TCGA-18-3409-01 21 46117566 46117566 C T KRTAP10-12 Silent p.S150S 0.37 TCGA-18-3409-01 21 47546007 47546007 G A COL6A2 Missense_Mutation p.G760R 0.36 deleterious(0) probably_damaging(1) TCGA-18-3409-01 21 47663398 47663398 G A MCM3AP Silent p.P1759P 0.31 TCGA-18-3409-01 21 47769664 47769664 C T PCNT Missense_Mutation p.S425F 0.27 benign(0.092) TCGA-18-3409-01 22 16449505 16449505 G A OR11H1 Silent p.F100F 0.22 TCGA-18-3409-01 22 17071927 17071927 C T CCT8L2 Missense_Mutation p.R505Q 0.53 tolerated(0.42) benign(0.055) TCGA-18-3409-01 22 17073174 17073174 G A CCT8L2 Silent p.L89L 0.21 TCGA-18-3409-01 22 17073361 17073361 T C CCT8L2 Missense_Mutation p.E27G 0.67 tolerated(1) benign(0) TCGA-18-3409-01 22 17288864 17288864 G A XKR3 Missense_Mutation p.P34S 0.37 tolerated(0.11) benign(0.003) TCGA-18-3409-01 22 17578719 17578719 C T IL17RA Nonsense_Mutation p.R66* 0.13 TCGA-18-3409-01 22 17584437 17584437 C T IL17RA Silent p.N272N 0.56 TCGA-18-3409-01 22 17619484 17619484 C A CECR5 Missense_Mutation p.E297D 0.20 tolerated(0.19) benign(0.065) TCGA-18-3409-01 22 17680473 17680473 C T CECR1 Intron 0.24 TCGA-18-3409-01 22 18178929 18178929 C T BCL2L13 Missense_Mutation p.R137W 0.54 deleterious(0.03) probably_damaging(0.998) TCGA-18-3409-01 22 18387540 18387540 G A MICAL3 Silent p.A110A 0.49 TCGA-18-3409-01 22 19903294 19903294 C T TXNRD2 Silent p.G174G 0.49 TCGA-18-3409-01 22 20385751 20385751 G A PI4KAP1 RNA 0.16 TCGA-18-3409-01 22 20761087 20761087 C T ZNF74 Silent p.F588F 0.53 TCGA-18-3409-01 22 21385699 21385699 G A SLC7A4 Missense_Mutation p.R135C 0.25 deleterious(0) probably_damaging(0.992) TCGA-18-3409-01 22 21385700 21385700 G A SLC7A4 Silent p.A134A 0.23 TCGA-18-3409-01 22 21396678 21396678 G A AC002472.13 5'Flank 0.23 TCGA-18-3409-01 22 21991155 21991155 C T CCDC116 Silent p.L546L 0.43 TCGA-18-3409-01 22 22316834 22316834 C T TOP3B Missense_Mutation p.E498K 0.23 deleterious(0) possibly_damaging(0.746) TCGA-18-3409-01 22 22322062 22322062 G A TOP3B Silent p.L255L 0.46 TCGA-18-3409-01 22 22550592 22550592 C T IGLV6-57 Missense_Mutation p.S90F 0.41 deleterious_low_confidence(0.02) probably_damaging(0.984) TCGA-18-3409-01 22 22869822 22869822 C T ZNF280A Missense_Mutation p.E45K 0.46 deleterious(0.03) probably_damaging(0.947) TCGA-18-3409-01 22 22869998 22869998 C T ZNF280A 5'UTR 0.15 TCGA-18-3409-01 22 22890618 22890618 G A PRAME Silent p.L467L 0.27 TCGA-18-3409-01 22 23040635 23040635 C T IGLV2-23 Missense_Mutation p.S28F 0.25 deleterious_low_confidence(0) benign(0.229) TCGA-18-3409-01 22 23656897 23656897 C T BCR Missense_Mutation p.S1241F 0.46 deleterious(0.01) possibly_damaging(0.485) TCGA-18-3409-01 22 24580109 24580109 C T SUSD2 Missense_Mutation p.P149S 0.48 tolerated(0.23) benign(0.21) TCGA-18-3409-01 22 24659778 24659778 C T POM121L9P RNA 0.53 TCGA-18-3409-01 22 24659779 24659779 C T POM121L9P RNA 0.53 TCGA-18-3409-01 22 24829655 24829655 C T ADORA2A Missense_Mutation p.L95F 0.50 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 22 24837072 24837072 C T ADORA2A Missense_Mutation p.P285L 0.20 deleterious(0) probably_damaging(1) TCGA-18-3409-01 22 25264494 25264494 C T SGSM1 Silent p.S382S 0.19 TCGA-18-3409-01 22 26164576 26164576 G A MYO18B Silent p.L231L 0.19 TCGA-18-3409-01 22 26166090 26166090 G A MYO18B Missense_Mutation p.R509K 0.43 tolerated(0.26) benign(0.041) TCGA-18-3409-01 22 26422503 26422503 G A MYO18B Missense_Mutation p.G2188E 0.46 tolerated(0.15) benign(0.028) TCGA-18-3409-01 22 26688337 26688337 C T SEZ6L Intron 0.46 TCGA-18-3409-01 22 26761418 26761418 G A SEZ6L Missense_Mutation p.G894R 0.17 deleterious(0) probably_damaging(1) TCGA-18-3409-01 22 29092948 29092948 G C CHEK2 Missense_Mutation p.R389G 0.15 deleterious(0) probably_damaging(1) TCGA-18-3409-01 22 29445418 29445418 C T ZNRF3 Missense_Mutation p.R417C 0.64 deleterious(0) possibly_damaging(0.886) TCGA-18-3409-01 22 29885616 29885616 C T NEFH Missense_Mutation p.P663S 0.51 deleterious_low_confidence(0.02) possibly_damaging(0.803) TCGA-18-3409-01 22 30415629 30415629 C T MTMR3 Missense_Mutation p.L661F 0.33 tolerated(0.76) benign(0.001) TCGA-18-3409-01 22 30688370 30688370 G A TBC1D10A Silent p.Y514Y 0.41 TCGA-18-3409-01 22 30688692 30688692 G A TBC1D10A Missense_Mutation p.P407L 0.41 deleterious(0.02) benign(0.002) TCGA-18-3409-01 22 30762204 30762204 C T CCDC157 Missense_Mutation p.S72F 0.22 deleterious(0) probably_damaging(0.994) TCGA-18-3409-01 22 30795663 30795663 C T SEC14L2 Missense_Mutation p.A29V 0.48 tolerated(0.24) benign(0.005) TCGA-18-3409-01 22 30795664 30795664 C T SEC14L2 Silent p.A29A 0.48 TCGA-18-3409-01 22 30795665 30795665 C T SEC14L2 Silent p.L30L 0.50 TCGA-18-3409-01 22 31324124 31324124 G A MORC2 Missense_Mutation p.S909F 0.15 deleterious(0) possibly_damaging(0.713) TCGA-18-3409-01 22 31722996 31722996 G A PATZ1 Missense_Mutation p.P649S 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-18-3409-01 22 31864273 31864273 G A EIF4ENIF1 Silent p.D62D 0.40 TCGA-18-3409-01 22 32586779 32586779 G A RFPL2 Missense_Mutation p.R373C 0.39 tolerated(0.18) benign(0.353) TCGA-18-3409-01 22 32894464 32894464 C T FBXO7 Missense_Mutation p.P506S 0.27 tolerated(0.28) possibly_damaging(0.685) TCGA-18-3409-01 22 32914226 32914226 G A SYN3 Nonsense_Mutation p.Q472* 0.16 TCGA-18-3409-01 22 33700276 33700276 G A LARGE Missense_Mutation p.P557S 0.16 tolerated(0.14) benign(0.39) TCGA-18-3409-01 22 35478585 35478585 C T ISX Missense_Mutation p.H102Y 0.39 deleterious(0.01) probably_damaging(0.937) TCGA-18-3409-01 22 35783130 35783130 G A HMOX1 Silent p.V199V 0.21 TCGA-18-3409-01 22 35948035 35948035 C T RASD2 Missense_Mutation p.R253W 0.55 deleterious(0.02) possibly_damaging(0.582) TCGA-18-3409-01 22 36124924 36124924 C T APOL5 Silent p.A427A 0.43 TCGA-18-3409-01 22 37322029 37322029 G A CSF2RB Silent p.E67E 0.20 TCGA-18-3409-01 22 37328925 37328925 G A CSF2RB Silent p.R377R 0.48 TCGA-18-3409-01 22 37692055 37692055 G A CYTH4 Silent p.K61K 0.25 TCGA-18-3409-01 22 38055295 38055295 C T PDXP Missense_Mutation p.P169L 0.54 deleterious(0) benign(0.244) TCGA-18-3409-01 22 38121560 38121564 CTATG - TRIOBP Frame_Shift_Del p.Y1000Gfs*7 0.46 TCGA-18-3409-01 22 38122137 38122137 C T TRIOBP Missense_Mutation p.P1192S 0.13 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-18-3409-01 22 38245426 38245426 C T EIF3L 5'UTR 0.45 TCGA-18-3409-01 22 38245427 38245427 T A EIF3L 5'UTR 0.45 TCGA-18-3409-01 22 38273863 38273863 C T EIF3L Silent p.F420F 0.53 TCGA-18-3409-01 22 38536119 38536119 G A PLA2G6 Missense_Mutation p.P223S 0.52 deleterious(0) probably_damaging(0.989) TCGA-18-3409-01 22 39966849 39966849 C T CACNA1I Missense_Mutation p.P31L 0.60 deleterious_low_confidence(0.03) possibly_damaging(0.713) TCGA-18-3409-01 22 39966850 39966850 C T CACNA1I Silent p.P31P 0.59 TCGA-18-3409-01 22 40819620 40819620 G A MKL1 Missense_Mutation p.P183S 0.13 tolerated(0.38) benign(0.014) TCGA-18-3409-01 22 40820341 40820341 C T MKL1 Missense_Mutation p.D116N 0.53 deleterious(0) probably_damaging(0.981) TCGA-18-3409-01 22 41077494 41077494 C T MCHR1 Silent p.F277F 0.54 TCGA-18-3409-01 22 41572364 41572364 C T EP300 Silent p.L1631L 0.45 TCGA-18-3409-01 22 41574204 41574204 C T EP300 Silent p.P2163P 0.48 TCGA-18-3409-01 22 42166870 42166870 G A MEI1 Missense_Mutation p.D817N 0.22 tolerated(0.15) benign(0.002) TCGA-18-3409-01 22 42383207 42383207 C T SEPT3 Intron 0.12 TCGA-18-3409-01 22 42388703 42388703 C T SEPT3 Silent p.D267D 0.54 TCGA-18-3409-01 22 42473757 42473757 G T FAM109B Missense_Mutation p.A154S 0.12 tolerated(0.9) benign(0.003) TCGA-18-3409-01 22 43024195 43024195 G A CYB5R3 Silent p.F175F 0.55 TCGA-18-3409-01 22 45278957 45278957 C T PHF21B 3'UTR 0.34 TCGA-18-3409-01 22 45779393 45779393 A - SMC1B Frame_Shift_Del p.L671* 0.18 TCGA-18-3409-01 22 45789578 45789578 C T SMC1B Missense_Mutation p.G494E 0.36 tolerated(0.15) benign(0.315) TCGA-18-3409-01 22 46136353 46136353 T C ATXN10 Missense_Mutation p.F370L 0.22 deleterious(0.02) benign(0.311) TCGA-18-3409-01 22 46656603 46656603 G A PKDREJ Nonsense_Mutation p.Q873* 0.38 TCGA-18-3409-01 22 46708110 46708110 C T GTSE1 Missense_Mutation p.L279F 0.33 tolerated(0.28) possibly_damaging(0.851) TCGA-18-3409-01 22 46725379 46725379 C T GTSE1 Missense_Mutation p.S684F 0.53 deleterious(0.03) probably_damaging(0.955) TCGA-18-3409-01 22 46930004 46930004 G A CELSR1 Missense_Mutation p.R1022C 0.38 tolerated(0.15) benign(0.022) TCGA-18-3409-01 22 47033853 47033853 C T GRAMD4 Silent p.F93F 0.18 TCGA-18-3409-01 22 50278157 50278157 G A ZBED4 Missense_Mutation p.G283R 0.52 deleterious(0) probably_damaging(0.992) TCGA-18-3409-01 22 50893807 50893807 G A SBF1 Missense_Mutation p.P1467L 0.46 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 22 50956661 50956661 C T NCAPH2 Silent p.S200S 0.51 TCGA-18-3409-01 22 50956662 50956662 C T NCAPH2 Missense_Mutation p.P201S 0.73 tolerated(0.21) benign(0.382) TCGA-18-3409-01 22 51065164 51065164 C T ARSA Missense_Mutation p.G237R 0.23 deleterious(0) probably_damaging(0.991) TCGA-18-3409-01 2 100055666 100055666 C T REV1 Missense_Mutation p.E204K 0.29 tolerated(0.05) benign(0.285) TCGA-18-3409-01 2 100623893 100623893 C T AFF3 Silent p.R93R 0.34 TCGA-18-3409-01 2 10143770 10143770 G A GRHL1 3'Flank 0.50 TCGA-18-3409-01 2 101564694 101564694 C T NPAS2 Intron 0.26 TCGA-18-3409-01 2 103128667 103128667 G A SLC9A4 Missense_Mutation p.M498I 0.34 tolerated(0.13) probably_damaging(0.991) TCGA-18-3409-01 2 103322321 103322321 C T SLC9A2 Missense_Mutation p.S665F 0.13 tolerated(0.24) possibly_damaging(0.553) TCGA-18-3409-01 2 107460166 107460166 G A ST6GAL2 Missense_Mutation p.H90Y 0.20 benign(0.002) TCGA-18-3409-01 2 108872116 108872116 A G SULT1C3 Missense_Mutation p.N163S 0.38 tolerated(0.27) benign(0.007) TCGA-18-3409-01 2 108910229 108910229 G A SULT1C2 Missense_Mutation p.E36K 0.37 tolerated(0.24) benign(0.014) TCGA-18-3409-01 2 108998307 108998307 C T SULT1C4 Missense_Mutation p.P87S 0.36 deleterious(0.01) possibly_damaging(0.906) TCGA-18-3409-01 2 112945155 112945155 C T FBLN7 3'UTR 0.26 TCGA-18-3409-01 2 113304673 113304673 C T POLR1B Missense_Mutation p.P88S 0.42 tolerated(0.27) benign(0.05) TCGA-18-3409-01 2 113308538 113308538 C T POLR1B Nonsense_Mutation p.R241* 0.18 TCGA-18-3409-01 2 113977710 113977710 G A PAX8 Missense_Mutation p.S412F 0.37 deleterious(0) possibly_damaging(0.776) TCGA-18-3409-01 2 114399678 114399678 C T RABL2A Missense_Mutation p.S220L 0.24 deleterious_low_confidence(0.03) benign(0.307) TCGA-18-3409-01 2 116520145 116520145 C T DPP10 Intron 0.31 TCGA-18-3409-01 2 116535395 116535395 G A DPP10 Missense_Mutation p.G453E 0.50 tolerated(0.15) benign(0.103) TCGA-18-3409-01 2 116548737 116548737 C T DPP10 Missense_Mutation p.L542F 0.34 tolerated(0.06) benign(0.004) TCGA-18-3409-01 2 116548746 116548746 G A DPP10 Missense_Mutation p.D545N 0.28 tolerated(0.29) benign(0.005) TCGA-18-3409-01 2 11802339 11802339 G A NTSR2 Missense_Mutation p.P218S 0.30 deleterious(0.01) probably_damaging(1) TCGA-18-3409-01 2 119600441 119600441 C T EN1 3'UTR 0.31 TCGA-18-3409-01 2 119750054 119750054 T C MARCO Splice_Site p.X418_splice 0.40 TCGA-18-3409-01 2 119752171 119752171 G A MARCO 3'UTR 0.29 TCGA-18-3409-01 2 120684190 120684190 C T PTPN4 Nonsense_Mutation p.Q340* 0.36 TCGA-18-3409-01 2 121712845 121712845 G A GLI2 Missense_Mutation p.R161K 0.50 deleterious(0.01) probably_damaging(0.977) TCGA-18-3409-01 2 121712846 121712846 G A GLI2 Silent p.R161R 0.50 TCGA-18-3409-01 2 128408678 128408678 C T GPR17 Silent p.T151T 0.38 TCGA-18-3409-01 2 128526523 128526523 G A WDR33 Missense_Mutation p.A86V 0.25 tolerated(0.09) unknown(0) TCGA-18-3409-01 2 129026283 129026283 C T HS6ST1 Nonsense_Mutation p.W230* 0.42 TCGA-18-3409-01 2 130949436 130949436 C T TUBA3E Missense_Mutation p.E441K 0.39 tolerated_low_confidence(0.1) benign(0.004) TCGA-18-3409-01 2 130949526 130949526 C T TUBA3E Missense_Mutation p.E411K 0.37 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-18-3409-01 2 131520089 131520089 G A AMER3 Silent p.R148R 0.34 TCGA-18-3409-01 2 131521887 131521887 C T AMER3 Missense_Mutation p.R748C 0.32 tolerated(0.18) benign(0.001) TCGA-18-3409-01 2 131981199 131981199 G A POTEE Silent p.G184G 0.38 TCGA-18-3409-01 2 133541729 133541729 G A NCKAP5 Silent p.V885V 0.39 TCGA-18-3409-01 2 135012198 135012198 G T MGAT5 Missense_Mutation p.G75V 0.25 tolerated(0.23) probably_damaging(0.961) TCGA-18-3409-01 2 135075138 135075138 C T MGAT5 Missense_Mutation p.P149S 0.45 tolerated(0.84) benign(0.006) TCGA-18-3409-01 2 135075139 135075139 C T MGAT5 Missense_Mutation p.P149L 0.43 tolerated(0.29) benign(0.1) TCGA-18-3409-01 2 135745407 135745407 C T MAP3K19 Silent p.R345R 0.31 TCGA-18-3409-01 2 135966512 135966512 C T ZRANB3 Missense_Mutation p.M844I 0.32 tolerated(0.11) benign(0.001) TCGA-18-3409-01 2 136701011 136701011 C A DARS Silent p.V120V 0.29 TCGA-18-3409-01 2 138208412 138208412 C T THSD7B Intron 0.33 TCGA-18-3409-01 2 138330102 138330102 G A THSD7B Nonsense_Mutation p.W1136* 0.29 TCGA-18-3409-01 2 141607685 141607685 G A LRP1B Missense_Mutation p.T1642I 0.32 possibly_damaging(0.803) TCGA-18-3409-01 2 141665470 141665470 C T LRP1B Missense_Mutation p.G1166S 0.26 probably_damaging(0.968) TCGA-18-3409-01 2 144903180 144903180 C T GTDC1 Silent p.Q102Q 0.42 TCGA-18-3409-01 2 148672787 148672787 T A ACVR2A Missense_Mutation p.L186I 0.29 tolerated(0.38) benign(0.002) TCGA-18-3409-01 2 152348670 152348670 C T NEB Silent p.Q8333Q 0.25 TCGA-18-3409-01 2 152425814 152425814 G A NEB Missense_Mutation p.H5835Y 0.37 possibly_damaging(0.756) TCGA-18-3409-01 2 152582017 152582017 C T NEB Missense_Mutation p.D118N 0.27 possibly_damaging(0.637) TCGA-18-3409-01 2 153515797 153515797 G A PRPF40A Missense_Mutation p.S799F 0.32 deleterious(0) unknown(0) TCGA-18-3409-01 2 15415806 15415806 G A NBAS Silent p.S1842S 0.45 TCGA-18-3409-01 2 155102469 155102469 G A GALNT13 Silent p.R277R 0.24 TCGA-18-3409-01 2 15679377 15679377 G T NBAS Silent p.L161L 0.24 TCGA-18-3409-01 2 158177688 158177688 G A ERMN 3'UTR 0.45 TCGA-18-3409-01 2 158272085 158272085 G A CYTIP 3'UTR 0.36 TCGA-18-3409-01 2 158390390 158390390 G A ACVR1C 3'UTR 0.27 TCGA-18-3409-01 2 159519805 159519805 C T PKP4 Missense_Mutation p.P809S 0.30 deleterious(0.01) probably_damaging(1) TCGA-18-3409-01 2 160035121 160035121 A T TANC1 Missense_Mutation p.N653Y 0.26 deleterious(0) possibly_damaging(0.841) TCGA-18-3409-01 2 160035487 160035487 C T TANC1 Nonsense_Mutation p.Q775* 0.31 TCGA-18-3409-01 2 160287383 160287383 G A BAZ2B Missense_Mutation p.P729S 0.24 benign(0.021) TCGA-18-3409-01 2 16082519 16082519 C T MYCN Silent p.I111I 0.55 TCGA-18-3409-01 2 162274740 162274740 C T TBR1 Silent p.S292S 0.25 TCGA-18-3409-01 2 163291736 163291736 G A KCNH7 Silent p.I642I 0.27 TCGA-18-3409-01 2 164466956 164466956 C T FIGN Silent p.K462K 0.22 TCGA-18-3409-01 2 164468023 164468023 C T FIGN Missense_Mutation p.E107K 0.34 deleterious(0.01) possibly_damaging(0.636) TCGA-18-3409-01 2 164591520 164591520 C T FIGN 5'UTR 0.31 TCGA-18-3409-01 2 1648443 1648443 G A PXDN Silent p.P1230P 0.35 TCGA-18-3409-01 2 1652238 1652238 G A PXDN Missense_Mutation p.P1105L 0.50 deleterious(0) probably_damaging(1) TCGA-18-3409-01 2 165557159 165557159 G A COBLL1 Missense_Mutation p.P484S 0.31 tolerated(0.31) benign(0.027) TCGA-18-3409-01 2 166152501 166152501 G A SCN2A Silent p.L56L 0.32 TCGA-18-3409-01 2 166514360 166514360 G A CSRNP3 Missense_Mutation p.G80S 0.43 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 2 166535936 166535936 C T CSRNP3 Silent p.F477F 0.22 TCGA-18-3409-01 2 166806105 166806105 C T TTC21B Missense_Mutation p.G51S 0.34 tolerated(0.16) possibly_damaging(0.507) TCGA-18-3409-01 2 166848822 166848822 C T SCN1A Missense_Mutation p.G1655R 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-18-3409-01 2 166850913 166850913 C T SCN1A Missense_Mutation p.G1532E 0.37 deleterious(0) probably_damaging(0.92) TCGA-18-3409-01 2 166897752 166897752 C T SCN1A Missense_Mutation p.V802I 0.27 tolerated(0.29) benign(0.084) TCGA-18-3409-01 2 166905459 166905459 C T SCN1A Missense_Mutation p.R322K 0.20 tolerated(0.74) benign(0.001) TCGA-18-3409-01 2 167055474 167055474 G A SCN9A Missense_Mutation p.S1881F 0.44 deleterious(0) probably_damaging(0.983) TCGA-18-3409-01 2 167060473 167060473 G A SCN9A Missense_Mutation p.S1578F 0.44 deleterious(0) probably_damaging(0.996) TCGA-18-3409-01 2 167141026 167141026 G A SCN9A Silent p.L637L 0.36 TCGA-18-3409-01 2 167262015 167262015 T A SCN7A 3'UTR 0.28 TCGA-18-3409-01 2 167300037 167300037 C T SCN7A Missense_Mutation p.M592I 0.25 tolerated(0.07) benign(0.002) TCGA-18-3409-01 2 167301432 167301432 G A SCN7A Missense_Mutation p.P489L 0.26 deleterious(0.02) benign(0.194) TCGA-18-3409-01 2 1677562 1677562 C T PXDN Missense_Mutation p.D291N 0.27 tolerated(0.11) benign(0.364) TCGA-18-3409-01 2 168098389 168098389 A G XIRP2 Missense_Mutation p.K382R 0.30 benign(0.044) TCGA-18-3409-01 2 168103270 168103270 C T XIRP2 Silent p.L1790L 0.29 TCGA-18-3409-01 2 168103905 168103905 G A XIRP2 Missense_Mutation p.M2001I 0.29 benign(0.002) TCGA-18-3409-01 2 168105874 168105874 G A XIRP2 Missense_Mutation p.E2658K 0.47 benign(0.133) TCGA-18-3409-01 2 168107429 168107429 G A XIRP2 Missense_Mutation p.R3176K 0.30 benign(0.019) TCGA-18-3409-01 2 168108255 168108255 C T XIRP2 Silent p.F3451F 0.40 TCGA-18-3409-01 2 168115596 168115596 C T XIRP2 3'UTR 0.28 TCGA-18-3409-01 2 168115631 168115631 A T XIRP2 3'UTR 0.42 TCGA-18-3409-01 2 169830316 169830316 C T ABCB11 Missense_Mutation p.G448E 0.28 deleterious(0) probably_damaging(1) TCGA-18-3409-01 2 170003310 170003310 C T LRP2 Silent p.K4250K 0.31 TCGA-18-3409-01 2 170063416 170063416 G A LRP2 Missense_Mutation p.R2272C 0.37 probably_damaging(0.97) TCGA-18-3409-01 2 170136994 170136994 C T LRP2 Missense_Mutation p.D403N 0.24 benign(0.224) TCGA-18-3409-01 2 170136995 170136995 C T LRP2 Silent p.R402R 0.24 TCGA-18-3409-01 2 171687555 171687555 C T GAD1 Missense_Mutation p.R134C 0.33 deleterious(0.02) possibly_damaging(0.824) TCGA-18-3409-01 2 171716237 171716237 G A GAD1 Missense_Mutation p.A544T 0.24 tolerated(0.07) probably_damaging(0.994) TCGA-18-3409-01 2 171974367 171974367 C T TLK1 Missense_Mutation p.G47D 0.27 deleterious_low_confidence(0.01) benign(0.012) TCGA-18-3409-01 2 171974368 171974368 C T TLK1 Splice_Site p.X47_splice 0.24 TCGA-18-3409-01 2 173352931 173352931 G A ITGA6 Missense_Mutation p.G827E 0.20 deleterious(0) probably_damaging(0.997) TCGA-18-3409-01 2 175613498 175613498 C A CHRNA1 Missense_Mutation p.R376I 0.33 deleterious(0) probably_damaging(0.952) TCGA-18-3409-01 2 176812320 176812320 T C KIAA1715 Silent p.P198P 0.29 TCGA-18-3409-01 2 176946977 176946977 C T EVX2 Missense_Mutation p.E210K 0.38 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 2 176946978 176946978 C T EVX2 Silent p.R209R 0.33 TCGA-18-3409-01 2 17698866 17698866 C T RAD51AP2 Missense_Mutation p.V273I 0.25 tolerated(0.06) benign(0.256) TCGA-18-3409-01 2 179393301 179393301 C T TTN Missense_Mutation p.S35726N 0.37 TCGA-18-3409-01 2 179407953 179407953 C T TTN Nonsense_Mutation p.W32249* 0.32 TCGA-18-3409-01 2 179408626 179408626 T G TTN Missense_Mutation p.K32082T 0.25 TCGA-18-3409-01 2 179425385 179425385 C T TTN Missense_Mutation p.E28492K 0.34 TCGA-18-3409-01 2 179429955 179429955 G A TTN Silent p.I26968I 0.27 TCGA-18-3409-01 2 179430570 179430570 A G TTN Silent p.F26763F 0.29 TCGA-18-3409-01 2 179431329 179431329 T C TTN Silent p.K26510K 0.35 TCGA-18-3409-01 2 179438046 179438046 T C TTN Silent p.K24271K 0.25 TCGA-18-3409-01 2 179463551 179463551 C T TTN Silent p.R18962R 0.22 TCGA-18-3409-01 2 179466246 179466246 C T TTN Missense_Mutation p.R18493K 0.30 TCGA-18-3409-01 2 179466788 179466788 C T TTN Missense_Mutation p.G18404R 0.28 TCGA-18-3409-01 2 179479601 179479601 C T TTN Missense_Mutation p.E16245K 0.64 TCGA-18-3409-01 2 179528042 179528042 C T TTN Silent p.K12217K 0.31 TCGA-18-3409-01 2 179530162 179530162 G A TTN Silent p.V11995V 0.29 TCGA-18-3409-01 2 179552937 179552937 C T TTN Missense_Mutation p.E10738K 0.33 TCGA-18-3409-01 2 179572409 179572409 C T TTN Missense_Mutation p.E9629K 0.31 TCGA-18-3409-01 2 179576847 179576847 G A TTN Missense_Mutation p.S9237F 0.33 TCGA-18-3409-01 2 179587235 179587235 C T TTN Missense_Mutation p.D7427N 0.42 TCGA-18-3409-01 2 179594458 179594458 C T TTN Silent p.G6174G 0.25 TCGA-18-3409-01 2 179605701 179605701 C T TTN Missense_Mutation p.E4087K 0.26 TCGA-18-3409-01 2 179611958 179611958 C T TTN Intron 0.19 TCGA-18-3409-01 2 179614163 179614163 C T TTN Intron 0.32 TCGA-18-3409-01 2 179621020 179621020 C T TTN Missense_Mutation p.G3728E 0.24 TCGA-18-3409-01 2 179621106 179621106 C T TTN Silent p.K3699K 0.31 TCGA-18-3409-01 2 179632527 179632527 C T TTN Missense_Mutation p.G3144S 0.25 TCGA-18-3409-01 2 179637867 179637867 T A TTN Missense_Mutation p.E2608D 0.27 TCGA-18-3409-01 2 179640777 179640777 G A TTN Silent p.V1938V 0.34 TCGA-18-3409-01 2 179648863 179648863 C T TTN Silent p.G903G 0.31 TCGA-18-3409-01 2 179665191 179665191 C T TTN Missense_Mutation p.G172R 0.38 TCGA-18-3409-01 2 179702390 179702390 C T CCDC141 Missense_Mutation p.D1186N 0.35 tolerated(0.26) benign(0.098) TCGA-18-3409-01 2 179733849 179733849 C T CCDC141 Missense_Mutation p.E797K 0.33 tolerated(0.35) possibly_damaging(0.517) TCGA-18-3409-01 2 179736944 179736944 G A CCDC141 Silent p.L665L 0.29 TCGA-18-3409-01 2 183593710 183593710 C T DNAJC10 Missense_Mutation p.R208W 0.34 deleterious(0.02) possibly_damaging(0.722) TCGA-18-3409-01 2 183841674 183841674 C T NCKAP1 Missense_Mutation p.D483N 0.37 tolerated(0.54) benign(0.008) TCGA-18-3409-01 2 185803648 185803648 C T ZNF804A Silent p.S1175S 0.26 TCGA-18-3409-01 2 188247996 188247996 C T CALCRL Missense_Mutation p.D30N 0.40 tolerated(0.39) benign(0) TCGA-18-3409-01 2 188247997 188247997 C A CALCRL Missense_Mutation p.E29D 0.40 tolerated(0.48) benign(0) TCGA-18-3409-01 2 1891377 1891377 T C MYT1L Missense_Mutation p.E840G 0.32 tolerated(0.06) benign(0.03) TCGA-18-3409-01 2 189852823 189852823 C T COL3A1 Missense_Mutation p.P182L 0.29 unknown(0) TCGA-18-3409-01 2 189854873 189854873 C T COL3A1 Missense_Mutation p.P248S 0.30 unknown(0) TCGA-18-3409-01 2 189870103 189870103 G A COL3A1 Missense_Mutation p.G987S 0.31 probably_damaging(0.999) TCGA-18-3409-01 2 1906880 1906880 C T MYT1L Silent p.R666R 0.38 TCGA-18-3409-01 2 191524442 191524442 C T NAB1 Silent p.S180S 0.50 TCGA-18-3409-01 2 192011344 192011344 G A STAT4 Missense_Mutation p.L90F 0.31 tolerated(0.27) probably_damaging(0.998) TCGA-18-3409-01 2 192011345 192011345 G A STAT4 Silent p.V89V 0.32 TCGA-18-3409-01 2 196671473 196671473 C T DNAH7 Silent p.R3389R 0.34 TCGA-18-3409-01 2 198285039 198285039 G A SF3B1 Intron 0.31 TCGA-18-3409-01 2 198570720 198570720 C T MARS2 Silent p.L197L 0.36 TCGA-18-3409-01 2 198640396 198640396 C T BOLL Silent p.G127G 0.15 TCGA-18-3409-01 2 198948736 198948736 G A PLCL1 Silent p.E165E 0.24 TCGA-18-3409-01 2 202003680 202003680 C T CFLAR Intron 0.41 TCGA-18-3409-01 2 202519625 202519625 C T MPP4 Missense_Mutation p.G439E 0.16 deleterious(0) probably_damaging(1) TCGA-18-3409-01 2 202519626 202519626 C T MPP4 Missense_Mutation p.G439R 0.19 tolerated(0.17) probably_damaging(1) TCGA-18-3409-01 2 203847162 203847162 T A CARF Missense_Mutation p.L686H 0.35 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-18-3409-01 2 20402482 20402482 G A SDC1 3'UTR 0.50 TCGA-18-3409-01 2 20403882 20403882 G A SDC1 Silent p.L107L 0.45 TCGA-18-3409-01 2 20403883 20403883 G A SDC1 Silent p.V106V 0.44 TCGA-18-3409-01 2 206480410 206480410 C T PARD3B Missense_Mutation p.P1102L 0.26 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 2 206480411 206480411 C T PARD3B Silent p.P1102P 0.26 TCGA-18-3409-01 2 208841613 208841613 G A PLEKHM3 Silent p.L436L 0.31 TCGA-18-3409-01 2 210569220 210569220 C T MAP2 Intron 0.30 TCGA-18-3409-01 2 210569221 210569221 C T MAP2 Intron 0.31 TCGA-18-3409-01 2 210588342 210588342 C T MAP2 Intron 0.22 TCGA-18-3409-01 2 210642019 210642019 C T UNC80 Silent p.L112L 0.35 TCGA-18-3409-01 2 211513227 211513227 G A CPS1 Missense_Mutation p.D1129N 0.32 deleterious(0.01) benign(0.029) TCGA-18-3409-01 2 21225418 21225418 G A APOB Silent p.T4292T 0.25 TCGA-18-3409-01 2 212285228 212285228 G A ERBB4 Missense_Mutation p.P1025S 0.43 deleterious(0.03) probably_damaging(0.95) TCGA-18-3409-01 2 21232203 21232203 G A APOB Nonsense_Mutation p.R2513* 0.42 TCGA-18-3409-01 2 21232524 21232524 C A APOB Nonsense_Mutation p.E2406* 0.24 TCGA-18-3409-01 2 213872064 213872064 C T IKZF2 3'UTR 0.29 TCGA-18-3409-01 2 214878802 214878802 G A SPAG16 Splice_Site p.X509_splice 0.36 TCGA-18-3409-01 2 215279217 215279217 G A VWC2L Silent p.V100V 0.22 TCGA-18-3409-01 2 215831648 215831648 G A ABCA12 Silent p.S1936S 0.34 TCGA-18-3409-01 2 216965283 216965283 C T TMEM169 3'UTR 0.35 TCGA-18-3409-01 2 216983789 216983789 A C XRCC5 Missense_Mutation p.H131P 0.26 deleterious(0.01) probably_damaging(0.975) TCGA-18-3409-01 2 217363563 217363563 C T RPL37A 5'UTR 0.29 TCGA-18-3409-01 2 219254597 219254597 G A SLC11A1 Missense_Mutation p.R267Q 0.28 deleterious(0) probably_damaging(1) TCGA-18-3409-01 2 219292727 219292727 G A VIL1 Silent p.V129V 0.31 TCGA-18-3409-01 2 219562286 219562286 C T STK36 Silent p.I954I 0.29 TCGA-18-3409-01 2 219617859 219617859 G A TTLL4 Nonsense_Mutation p.W1070* 0.31 TCGA-18-3409-01 2 219692566 219692566 C T PRKAG3 Silent p.E270E 0.40 TCGA-18-3409-01 2 219888009 219888009 C T CCDC108 Missense_Mutation p.E914K 0.27 tolerated(0.12) benign(0.175) TCGA-18-3409-01 2 219894862 219894862 G A CCDC108 Silent p.P410P 0.30 TCGA-18-3409-01 2 219894863 219894863 G A CCDC108 Missense_Mutation p.P410L 0.31 tolerated(0.1) possibly_damaging(0.541) TCGA-18-3409-01 2 220147635 220147635 C T DNAJB2 Silent p.S143S 0.24 TCGA-18-3409-01 2 220286069 220286069 C T DES Missense_Mutation p.S344F 0.29 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 2 220396842 220396842 G A ASIC4 Missense_Mutation p.E410K 0.28 tolerated(0.15) benign(0.179) TCGA-18-3409-01 2 220432668 220432668 G T OBSL1 Silent p.R436R 0.32 TCGA-18-3409-01 2 220432669 220432669 G A OBSL1 Silent p.P435P 0.33 TCGA-18-3409-01 2 223559194 223559194 G A MOGAT1 Missense_Mutation p.G198R 0.35 deleterious(0) probably_damaging(0.996) TCGA-18-3409-01 2 224463020 224463020 C T SCG2 Silent p.Q327Q 0.25 TCGA-18-3409-01 2 225662655 225662655 G A DOCK10 Missense_Mutation p.S1513L 0.39 tolerated(0.17) benign(0.064) TCGA-18-3409-01 2 225710316 225710316 A G DOCK10 Missense_Mutation p.I760T 0.29 deleterious(0) benign(0.166) TCGA-18-3409-01 2 225714262 225714262 C T DOCK10 Missense_Mutation p.V733I 0.21 deleterious(0) benign(0.047) TCGA-18-3409-01 2 226447151 226447151 C T NYAP2 Missense_Mutation p.P340S 0.35 deleterious(0) probably_damaging(0.966) TCGA-18-3409-01 2 228148505 228148505 G A COL4A3 Missense_Mutation p.M893I 0.23 unknown(0) TCGA-18-3409-01 2 228157944 228157944 G A COL4A3 Missense_Mutation p.G1083E 0.38 unknown(0) TCGA-18-3409-01 2 228172619 228172619 C T COL4A3 Silent p.A1482A 0.27 TCGA-18-3409-01 2 228175576 228175576 C T COL4A3 Silent p.L1614L 0.25 TCGA-18-3409-01 2 228476363 228476363 G A C2orf83 Missense_Mutation p.P67L 0.30 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-18-3409-01 2 228786214 228786214 G A DAW1 Missense_Mutation p.E384K 0.41 tolerated(0.25) benign(0.046) TCGA-18-3409-01 2 228846348 228846348 G T SPHKAP 3'UTR 0.35 TCGA-18-3409-01 2 228846570 228846570 C T SPHKAP Missense_Mutation p.D1656N 0.33 deleterious(0.02) possibly_damaging(0.461) TCGA-18-3409-01 2 228881929 228881929 C T SPHKAP Missense_Mutation p.R1214Q 0.34 tolerated(0.07) benign(0.094) TCGA-18-3409-01 2 228882995 228882995 C T SPHKAP Missense_Mutation p.G859R 0.31 tolerated(0.63) benign(0.001) TCGA-18-3409-01 2 228884579 228884579 G A SPHKAP Nonsense_Mutation p.Q331* 0.25 TCGA-18-3409-01 2 231033803 231033803 C T SP110 3'UTR 0.36 TCGA-18-3409-01 2 231157413 231157413 G A SP140 Silent p.T626T 0.32 TCGA-18-3409-01 2 231256845 231256845 C T SP140L Silent p.F336F 0.43 TCGA-18-3409-01 2 231742878 231742878 C T ITM2C 3'UTR 0.41 TCGA-18-3409-01 2 231973782 231973782 C T HTR2B Missense_Mutation p.E299K 0.34 tolerated(0.24) benign(0.009) TCGA-18-3409-01 2 233407197 233407197 G A CHRNG Missense_Mutation p.E191K 0.19 deleterious(0.05) possibly_damaging(0.842) TCGA-18-3409-01 2 234846100 234846100 C T TRPM8 Missense_Mutation p.P99S 0.28 tolerated(0.1) benign(0.343) TCGA-18-3409-01 2 238266024 238266024 C T COL6A3 Missense_Mutation p.G2183E 0.31 benign(0.28) TCGA-18-3409-01 2 238289675 238289675 C T COL6A3 Missense_Mutation p.E594K 0.36 possibly_damaging(0.826) TCGA-18-3409-01 2 238296524 238296524 C T COL6A3 Missense_Mutation p.G338E 0.18 probably_damaging(0.991) TCGA-18-3409-01 2 238725710 238725710 C T RBM44 Missense_Mutation p.P51S 0.32 tolerated(0.61) benign(0.037) TCGA-18-3409-01 2 239159302 239159302 A T PER2 Silent p.T1119T 0.24 TCGA-18-3409-01 2 239161815 239161815 G A PER2 Missense_Mutation p.P950L 0.43 deleterious(0) possibly_damaging(0.856) TCGA-18-3409-01 2 239257465 239257465 C T TRAF3IP1 Missense_Mutation p.P448L 0.26 deleterious(0.02) benign(0.093) TCGA-18-3409-01 2 240078360 240078360 G A HDAC4 Missense_Mutation p.L241F 0.34 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 2 24011440 24011440 A T ATAD2B Missense_Mutation p.F906L 0.35 deleterious(0.04) possibly_damaging(0.872) TCGA-18-3409-01 2 241465144 241465144 G A ANKMY1 Silent p.S342S 0.21 TCGA-18-3409-01 2 241536129 241536129 C T CAPN10 Missense_Mutation p.P505S 0.21 tolerated(0.14) benign(0.009) TCGA-18-3409-01 2 241536287 241536287 C T CAPN10 Silent p.V557V 0.24 TCGA-18-3409-01 2 241689958 241689958 G A KIF1A Silent p.F955F 0.26 TCGA-18-3409-01 2 242752508 242752508 G A NEU4 5'UTR 0.36 TCGA-18-3409-01 2 24432886 24432886 G A ITSN2 Missense_Mutation p.S1425F 0.44 deleterious(0) unknown(0) TCGA-18-3409-01 2 25387536 25387536 C T POMC Missense_Mutation p.D36N 0.30 deleterious(0.02) benign(0.15) TCGA-18-3409-01 2 26706345 26706345 G A OTOF Silent p.F459F 0.35 TCGA-18-3409-01 2 26864147 26864147 C T CIB4 Silent p.E12E 0.33 TCGA-18-3409-01 2 27156166 27156166 C T DPYSL5 Missense_Mutation p.S252L 0.23 deleterious(0.03) benign(0.005) TCGA-18-3409-01 2 27351984 27351984 G A ABHD1 Silent p.R149R 0.26 TCGA-18-3409-01 2 27430445 27430445 G A SLC5A6 Missense_Mutation p.S25F 0.28 deleterious(0.03) possibly_damaging(0.635) TCGA-18-3409-01 2 27446793 27446793 T C CAD Missense_Mutation p.F335S 0.32 deleterious(0) probably_damaging(0.993) TCGA-18-3409-01 2 27499703 27499703 C T DNAJC5G Missense_Mutation p.S36F 0.35 deleterious(0) possibly_damaging(0.488) TCGA-18-3409-01 2 27886513 27886513 G A SLC4A1AP 5'UTR 0.21 TCGA-18-3409-01 2 28802539 28802539 G A PLB1 Missense_Mutation p.G511S 0.16 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 2 29416491 29416491 C T ALK Missense_Mutation p.E1488K 0.39 tolerated(0.36) benign(0.146) TCGA-18-3409-01 2 30379532 30379532 C T YPEL5 Silent p.F5F 0.44 TCGA-18-3409-01 2 30973992 30973992 G A CAPN13 Missense_Mutation p.P405S 0.34 deleterious(0.03) probably_damaging(0.98) TCGA-18-3409-01 2 31758810 31758810 C T AL133247.2 Intron 0.28 TCGA-18-3409-01 2 32768395 32768395 G A BIRC6 Missense_Mutation p.E4127K 0.37 probably_damaging(0.987) TCGA-18-3409-01 2 37041424 37041424 G A VIT Missense_Mutation p.E668K 0.38 deleterious(0) possibly_damaging(0.899) TCGA-18-3409-01 2 37230716 37230716 C T HEATR5B Silent p.Q1673Q 0.31 TCGA-18-3409-01 2 3744989 3744989 C T ALLC Nonsense_Mutation p.R265* 0.25 TCGA-18-3409-01 2 37450511 37450511 G A CEBPZ Silent p.S561S 0.37 TCGA-18-3409-01 2 37450512 37450512 G A CEBPZ Missense_Mutation p.S561F 0.38 deleterious(0) probably_damaging(0.995) TCGA-18-3409-01 2 37468858 37468858 C T NDUFAF7 Silent p.S182S 0.26 TCGA-18-3409-01 2 37543586 37543586 G A PRKD3 Missense_Mutation p.P28S 0.25 tolerated_low_confidence(0.13) benign(0.004) TCGA-18-3409-01 2 38301667 38301667 G A CYP1B1 Missense_Mutation p.P289S 0.40 deleterious(0.04) possibly_damaging(0.638) TCGA-18-3409-01 2 39088781 39088781 G A DHX57 Silent p.S257S 0.31 TCGA-18-3409-01 2 39487864 39487864 G A MAP4K3 Missense_Mutation p.P731S 0.37 deleterious(0.02) probably_damaging(1) TCGA-18-3409-01 2 39944150 39944150 G A TMEM178A Missense_Mutation p.G218E 0.72 deleterious(0.02) probably_damaging(1) TCGA-18-3409-01 2 40655928 40655928 A T SLC8A1 Missense_Mutation p.V498D 0.38 deleterious(0.01) probably_damaging(0.951) TCGA-18-3409-01 2 43520065 43520065 C T THADA Missense_Mutation p.G1576R 0.31 tolerated(0.53) benign(0.004) TCGA-18-3409-01 2 43798883 43798883 G A THADA Missense_Mutation p.P676L 0.34 deleterious(0) probably_damaging(0.974) TCGA-18-3409-01 2 46607560 46607560 C T EPAS1 Silent p.F583F 0.39 TCGA-18-3409-01 2 46986423 46986423 C T SOCS5 Missense_Mutation p.P252S 0.25 tolerated(0.18) benign(0.001) TCGA-18-3409-01 2 46987060 46987060 C T SOCS5 Missense_Mutation p.S464L 0.27 tolerated(0.14) benign(0.122) TCGA-18-3409-01 2 48681800 48681800 C T PPP1R21 Nonsense_Mutation p.R65* 0.30 TCGA-18-3409-01 2 48698265 48698265 C T PPP1R21 Missense_Mutation p.P313S 0.33 deleterious(0.01) probably_damaging(1) TCGA-18-3409-01 2 48808054 48808054 C T STON1-GTF2A1L Silent p.I94I 0.34 TCGA-18-3409-01 2 48873632 48873632 G A STON1-GTF2A1L Silent p.E847E 0.37 TCGA-18-3409-01 2 48898743 48898743 C T STON1-GTF2A1L Missense_Mutation p.S1122F 0.32 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 2 48936160 48936160 C T LHCGR Missense_Mutation p.E203K 0.36 tolerated(0.29) benign(0.207) TCGA-18-3409-01 2 50280573 50280573 C T NRXN1 Missense_Mutation p.G1362R 0.30 deleterious(0.05) probably_damaging(0.992) TCGA-18-3409-01 2 54483336 54483336 G A TSPYL6 5'UTR 0.53 TCGA-18-3409-01 2 54483337 54483337 G A TSPYL6 5'UTR 0.53 TCGA-18-3409-01 2 58386588 58386588 T C VRK2 Silent p.F429F 0.34 TCGA-18-3409-01 2 61014149 61014149 C T PAPOLG Missense_Mutation p.L412F 0.32 deleterious(0.02) possibly_damaging(0.82) TCGA-18-3409-01 2 6112331 6112331 C T DKFZP761K2322 Missense_Mutation p.S92F 0.38 possibly_damaging(0.692) TCGA-18-3409-01 2 62069296 62069296 G A FAM161A Missense_Mutation p.P128L 0.27 deleterious(0.01) benign(0.315) TCGA-18-3409-01 2 63605587 63605587 G A WDPCP Missense_Mutation p.S561F 0.33 deleterious(0.01) benign(0.279) TCGA-18-3409-01 2 64322102 64322102 G A PELI1 Missense_Mutation p.R331C 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-18-3409-01 2 64682722 64682722 G A LGALSL Splice_Site p.X37_splice 0.28 TCGA-18-3409-01 2 64812640 64812640 G A AFTPH Missense_Mutation p.R875K 0.26 tolerated(0.23) benign(0.012) TCGA-18-3409-01 2 68607526 68607526 A T PLEK Nonsense_Mutation p.K37* 0.30 TCGA-18-3409-01 2 71360531 71360531 C T MPHOSPH10 Missense_Mutation p.S198F 0.26 deleterious(0) probably_damaging(1) TCGA-18-3409-01 2 71591282 71591282 C T ZNF638 Silent p.S539S 0.40 TCGA-18-3409-01 2 7160794 7160794 C T RNF144A Silent p.F164F 0.26 TCGA-18-3409-01 2 71654208 71654208 G A ZNF638 Missense_Mutation p.D1737N 0.27 deleterious(0) possibly_damaging(0.878) TCGA-18-3409-01 2 71662005 71662005 C T ZNF638 3'UTR 0.25 TCGA-18-3409-01 2 72361913 72361913 C T CYP26B1 Missense_Mutation p.E280K 0.36 tolerated(0.13) probably_damaging(0.919) TCGA-18-3409-01 2 73160999 73160999 G A EMX1 Silent p.K263K 0.27 TCGA-18-3409-01 2 73461456 73461456 C T CCT7 5'UTR 0.25 TCGA-18-3409-01 2 73800511 73800511 C T ALMS1 Missense_Mutation p.P3835L 0.23 probably_damaging(0.976) TCGA-18-3409-01 2 74043295 74043295 G A C2orf78 Missense_Mutation p.G649R 0.22 deleterious(0.02) possibly_damaging(0.449) TCGA-18-3409-01 2 74480165 74480165 G A SLC4A5 Missense_Mutation p.P402S 0.50 deleterious(0) probably_damaging(1) TCGA-18-3409-01 2 74688726 74688726 G A MOGS Silent p.S730S 0.31 TCGA-18-3409-01 2 74688727 74688727 G T MOGS Missense_Mutation p.S730Y 0.32 deleterious(0) probably_damaging(1) TCGA-18-3409-01 2 74699807 74699807 G A MRPL53 5'UTR 0.20 TCGA-18-3409-01 2 74789505 74789505 C T M1AP Missense_Mutation p.G374R 0.37 tolerated(0.13) benign(0.011) TCGA-18-3409-01 2 75933713 75933713 C T GCFC2 Silent p.K110K 0.26 TCGA-18-3409-01 2 79313613 79313613 C T REG1B Missense_Mutation p.M67I 0.34 tolerated(0.18) benign(0.02) TCGA-18-3409-01 2 79348738 79348738 G A REG1A Missense_Mutation p.G39S 0.42 deleterious(0.01) possibly_damaging(0.7) TCGA-18-3409-01 2 79349168 79349168 G A REG1A Missense_Mutation p.E80K 0.44 deleterious(0.04) probably_damaging(0.995) TCGA-18-3409-01 2 80096945 80096945 G A CTNNA2 Missense_Mutation p.E157K 0.25 tolerated(0.26) benign(0.141) TCGA-18-3409-01 2 80846328 80846328 G A CTNNA2 Intron 0.29 TCGA-18-3409-01 2 85621988 85621988 G A CAPG 3'UTR 0.30 TCGA-18-3409-01 2 85769398 85769398 G A MAT2A Missense_Mutation p.E224K 0.34 tolerated(0.08) possibly_damaging(0.715) TCGA-18-3409-01 2 85829076 85829076 G A TMEM150A 5'UTR 0.35 TCGA-18-3409-01 2 86258525 86258525 G A POLR1A Silent p.V1502V 0.42 TCGA-18-3409-01 2 86258607 86258607 G A POLR1A Missense_Mutation p.S1475F 0.38 deleterious(0.05) benign(0.153) TCGA-18-3409-01 2 86459855 86459855 C T REEP1 Missense_Mutation p.G170D 0.14 tolerated(0.64) benign(0.134) TCGA-18-3409-01 2 86459856 86459856 C T REEP1 Missense_Mutation p.G170S 0.19 tolerated(0.42) benign(0.036) TCGA-18-3409-01 2 86831609 86831609 G A RNF103 Missense_Mutation p.S472F 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-18-3409-01 2 87042750 87042750 G A CD8B Missense_Mutation p.P238S 0.30 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-18-3409-01 2 8890323 8890323 G A KIDINS220 Silent p.F1111F 0.34 TCGA-18-3409-01 2 89986880 89986880 G A IGKV2D-29 Missense_Mutation p.G54E 0.25 deleterious(0.02) benign(0.395) TCGA-18-3409-01 2 89999556 89999556 C T IGKV2D-28 Missense_Mutation p.P120S 0.31 deleterious(0) probably_damaging(1) TCGA-18-3409-01 2 90108861 90108861 C T IGKV6D-41 Silent p.T42T 0.39 TCGA-18-3409-01 2 90193339 90193339 C T IGKV1D-13 Missense_Mutation p.S89F 0.36 deleterious(0.02) benign(0.246) TCGA-18-3409-01 2 90212096 90212096 C T IGKV3D-11 Missense_Mutation p.A63V 0.40 tolerated(0.06) benign(0.038) TCGA-18-3409-01 2 95519306 95519306 C T ANKRD20A8P RNA 0.26 TCGA-18-3409-01 2 95713853 95713853 G A MAL Silent p.E81E 0.35 TCGA-18-3409-01 2 96040136 96040136 G A KCNIP3 Missense_Mutation p.E92K 0.25 deleterious(0) probably_damaging(0.927) TCGA-18-3409-01 2 96259963 96259963 C T TRIM43 Silent p.F64F 0.33 TCGA-18-3409-01 2 96690582 96690582 C T GPAT2 Missense_Mutation p.G456E 0.28 deleterious(0.02) probably_damaging(0.969) TCGA-18-3409-01 2 97216904 97216904 G A ARID5A Silent p.R213R 0.37 TCGA-18-3409-01 2 97505485 97505485 G A ANKRD23 Silent p.A267A 0.28 TCGA-18-3409-01 2 98206113 98206113 G T ANKRD36B RNA 0.26 TCGA-18-3409-01 2 98411486 98411486 G A TMEM131 Missense_Mutation p.S1098F 0.27 deleterious(0) probably_damaging(0.996) TCGA-18-3409-01 2 98846523 98846523 G A VWA3B Missense_Mutation p.E721K 0.39 tolerated(0.11) benign(0.147) TCGA-18-3409-01 2 98852942 98852942 T G VWA3B Splice_Site p.X839_splice 0.31 TCGA-18-3409-01 2 98916627 98916627 A G VWA3B Missense_Mutation p.K1123R 0.38 tolerated(1) benign(0.002) TCGA-18-3409-01 2 98996811 98996811 G A CNGA3 Missense_Mutation p.G130E 0.30 tolerated(0.55) benign(0.005) TCGA-18-3409-01 2 99251711 99251711 C T MGAT4A Missense_Mutation p.R481Q 0.34 tolerated(0.24) benign(0.001) TCGA-18-3409-01 3 100945757 100945757 A C IMPG2 3'UTR 0.26 TCGA-18-3409-01 3 10146192 10146192 C T FANCD2OS Silent p.R89R 0.56 TCGA-18-3409-01 3 101520114 101520114 C T NXPE3 Silent p.I43I 0.29 TCGA-18-3409-01 3 10242050 10242050 C T IRAK2 Intron 0.57 TCGA-18-3409-01 3 10312277 10312277 C T TATDN2 Missense_Mutation p.P471S 0.49 tolerated(0.72) benign(0.01) TCGA-18-3409-01 3 10331778 10331778 G A GHRL Silent p.S29S 0.50 TCGA-18-3409-01 3 107524288 107524288 C T BBX Missense_Mutation p.S937F 0.30 deleterious(0) probably_damaging(0.996) TCGA-18-3409-01 3 108147687 108147687 C T MYH15 Silent p.R1138R 0.31 TCGA-18-3409-01 3 108572904 108572904 G A TRAT1 3'UTR 0.29 TCGA-18-3409-01 3 108572910 108572910 C T TRAT1 3'UTR 0.33 TCGA-18-3409-01 3 108698425 108698425 G A MORC1 Missense_Mutation p.S805L 0.35 tolerated(0.74) benign(0.003) TCGA-18-3409-01 3 108836936 108836936 G A MORC1 5'UTR 0.75 TCGA-18-3409-01 3 109031461 109031461 C T DPPA2 Missense_Mutation p.E38K 0.29 deleterious(0.03) probably_damaging(0.968) TCGA-18-3409-01 3 111918267 111918267 C T SLC9C1 Silent p.K808K 0.30 TCGA-18-3409-01 3 112301687 112301687 C T SLC35A5 3'UTR 0.45 TCGA-18-3409-01 3 112324331 112324331 C T CCDC80 Missense_Mutation p.G929E 0.36 deleterious(0.02) probably_damaging(1) TCGA-18-3409-01 3 112997105 112997105 G T BOC Splice_Site p.X568_splice 0.41 TCGA-18-3409-01 3 113890720 113890720 G A DRD3 Silent p.I40I 0.24 TCGA-18-3409-01 3 113955416 113955416 G A ZNF80 Missense_Mutation p.T169I 0.52 deleterious(0) benign(0.017) TCGA-18-3409-01 3 114069570 114069570 G A ZBTB20 Missense_Mutation p.S452F 0.47 deleterious(0) benign(0.064) TCGA-18-3409-01 3 115560810 115560810 C T LSAMP Silent p.K267K 0.46 TCGA-18-3409-01 3 118621729 118621729 T G IGSF11 Missense_Mutation p.T312P 0.39 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 3 118648981 118648981 G A IGSF11 Missense_Mutation p.S65F 0.45 deleterious(0) probably_damaging(0.962) TCGA-18-3409-01 3 118865034 118865034 G A C3orf30 5'UTR 0.41 TCGA-18-3409-01 3 118943002 118943002 G A B4GALT4 Missense_Mutation p.H193Y 0.49 deleterious(0.01) probably_damaging(0.984) TCGA-18-3409-01 3 119336889 119336889 C T PLA1A Missense_Mutation p.H260Y 0.34 deleterious(0) probably_damaging(1) TCGA-18-3409-01 3 119458116 119458116 G A MAATS1 Missense_Mutation p.M492I 0.38 tolerated(0.56) benign(0) TCGA-18-3409-01 3 120134863 120134863 C T FSTL1 Silent p.R25R 0.28 TCGA-18-3409-01 3 120134864 120134864 C T FSTL1 Missense_Mutation p.R25K 0.27 tolerated(0.71) unknown(0) TCGA-18-3409-01 3 121396221 121396221 G A GOLGB1 Nonsense_Mutation p.Q2984* 0.29 TCGA-18-3409-01 3 121724179 121724179 C T ILDR1 Silent p.R97R 0.36 TCGA-18-3409-01 3 121980931 121980931 A T CASR Missense_Mutation p.E350V 0.44 deleterious(0) probably_damaging(0.995) TCGA-18-3409-01 3 122254827 122254827 G A PARP9 Intron 0.33 TCGA-18-3409-01 3 124632524 124632524 G A MUC13 Silent p.T322T 0.40 TCGA-18-3409-01 3 125828880 125828880 G A ALDH1L1 Missense_Mutation p.H762Y 0.30 deleterious(0) benign(0.074) TCGA-18-3409-01 3 125877439 125877439 G A ALDH1L1 Silent p.S67S 0.42 TCGA-18-3409-01 3 126071359 126071359 G A KLF15 Missense_Mutation p.P136L 0.30 tolerated(0.32) probably_damaging(0.999) TCGA-18-3409-01 3 12611664 12611664 C T MKRN2 Missense_Mutation p.P84S 0.50 tolerated(0.81) benign(0.001) TCGA-18-3409-01 3 12611665 12611665 C T MKRN2 Missense_Mutation p.P84L 0.50 tolerated(0.5) benign(0.001) TCGA-18-3409-01 3 126202227 126202227 C T UROC1 Nonsense_Mutation p.W685* 0.41 TCGA-18-3409-01 3 126736309 126736309 C T PLXNA1 Silent p.A1106A 0.46 TCGA-18-3409-01 3 126746880 126746880 C T PLXNA1 Missense_Mutation p.S1487F 0.38 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 3 126751655 126751655 C T PLXNA1 Silent p.S1857S 0.30 TCGA-18-3409-01 3 126916034 126916034 C T C3orf56 Missense_Mutation p.A169V 0.33 tolerated(0.14) benign(0) TCGA-18-3409-01 3 127379844 127379844 C T PODXL2 Missense_Mutation p.P325S 0.30 tolerated(0.39) benign(0.018) TCGA-18-3409-01 3 127387383 127387383 C T PODXL2 Silent p.L436L 0.30 TCGA-18-3409-01 3 127642514 127642514 C T KBTBD12 Missense_Mutation p.H204Y 0.35 tolerated(0.06) benign(0.081) TCGA-18-3409-01 3 128199830 128199830 G A GATA2 3'UTR 0.57 TCGA-18-3409-01 3 129234370 129234370 C T IFT122 Missense_Mutation p.P1116S 0.32 deleterious(0) probably_damaging(0.976) TCGA-18-3409-01 3 129278576 129278576 G A PLXND1 Silent p.I1728I 0.21 TCGA-18-3409-01 3 129695765 129695765 A G TRH Silent p.A145A 0.26 TCGA-18-3409-01 3 130095415 130095415 C T COL6A5 Missense_Mutation p.P135S 0.52 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 3 130380524 130380524 C T COL6A6 Silent p.P1958P 0.32 TCGA-18-3409-01 3 130674959 130674959 C T ATP2C1 Silent p.T290T 0.21 TCGA-18-3409-01 3 133098693 133098693 C T TMEM108 Silent p.P46P 0.35 TCGA-18-3409-01 3 133496008 133496008 G A TF Missense_Mutation p.R663K 0.34 tolerated(1) benign(0.001) TCGA-18-3409-01 3 133647202 133647202 T G C3orf36 Missense_Mutation p.K149T 0.28 deleterious_low_confidence(0.03) possibly_damaging(0.607) TCGA-18-3409-01 3 137484073 137484073 C T SOX14 Silent p.I149I 0.42 TCGA-18-3409-01 3 138178092 138178092 C T ESYT3 Silent p.I215I 0.36 TCGA-18-3409-01 3 138669273 138669273 C T C3orf72 Silent p.S129S 0.42 TCGA-18-3409-01 3 138669558 138669558 C T C3orf72 3'UTR 0.30 TCGA-18-3409-01 3 138739123 138739123 G A PRR23B Silent p.F127F 0.42 TCGA-18-3409-01 3 138763045 138763045 C T PRR23C Missense_Mutation p.E140K 0.27 tolerated(0.21) possibly_damaging(0.721) TCGA-18-3409-01 3 141331133 141331133 C T RASA2 Missense_Mutation p.P843L 0.23 deleterious(0) probably_damaging(0.997) TCGA-18-3409-01 3 142272709 142272709 G A ATR Silent p.H830H 0.37 TCGA-18-3409-01 3 142272711 142272711 G T ATR Missense_Mutation p.H830N 0.36 tolerated(0.56) benign(0) TCGA-18-3409-01 3 146246546 146246546 G A PLSCR1 Missense_Mutation p.P56L 0.47 deleterious(0.01) benign(0.012) TCGA-18-3409-01 3 14798904 14798904 C T C3orf20 Missense_Mutation p.P656L 0.40 deleterious(0) possibly_damaging(0.878) TCGA-18-3409-01 3 14862877 14862877 C T FGD5 Missense_Mutation p.P767S 0.53 deleterious(0.01) probably_damaging(0.999) TCGA-18-3409-01 3 149192700 149192700 G A TM4SF4 Silent p.G12G 0.25 TCGA-18-3409-01 3 149216509 149216509 G A TM4SF4 Silent p.G134G 0.20 TCGA-18-3409-01 3 150264490 150264490 G A EIF2A 5'UTR 0.26 TCGA-18-3409-01 3 150645901 150645901 C T CLRN1 Missense_Mutation p.G187E 0.21 tolerated(0.34) benign(0.028) TCGA-18-3409-01 3 151086016 151086016 C T MED12L Missense_Mutation p.A1141V 0.12 tolerated(0.65) benign(0.001) TCGA-18-3409-01 3 15131933 15131933 G A ZFYVE20 Missense_Mutation p.P88S 0.59 deleterious(0.01) probably_damaging(0.954) TCGA-18-3409-01 3 154878200 154878200 A G MME Silent p.V541V 0.49 TCGA-18-3409-01 3 155199797 155199797 G A PLCH1 Missense_Mutation p.P1348S 0.30 deleterious_low_confidence(0.02) benign(0.014) TCGA-18-3409-01 3 155200114 155200114 A T PLCH1 Missense_Mutation p.F1242Y 0.44 tolerated_low_confidence(0.07) benign(0.285) TCGA-18-3409-01 3 160804255 160804255 G A B3GALNT1 Silent p.A96A 0.43 TCGA-18-3409-01 3 160942831 160942831 C T NMD3 Missense_Mutation p.S53L 0.39 tolerated(0.24) benign(0.005) TCGA-18-3409-01 3 161214691 161214691 G A OTOL1 Silent p.T32T 0.34 TCGA-18-3409-01 3 161220930 161220930 G A OTOL1 Missense_Mutation p.G212R 0.50 deleterious(0) unknown(0) TCGA-18-3409-01 3 164697121 164697121 C T SI 3'UTR 0.44 TCGA-18-3409-01 3 164716433 164716433 C T SI Missense_Mutation p.G1479R 0.32 deleterious(0) probably_damaging(1) TCGA-18-3409-01 3 164764709 164764709 C T SI Missense_Mutation p.G603R 0.32 deleterious(0) probably_damaging(1) TCGA-18-3409-01 3 164906911 164906911 G A SLITRK3 Silent p.L570L 0.27 TCGA-18-3409-01 3 164908399 164908399 C T SLITRK3 Missense_Mutation p.E74K 0.39 deleterious(0.04) benign(0.121) TCGA-18-3409-01 3 164908619 164908619 C T SLITRK3 5'UTR 0.26 TCGA-18-3409-01 3 17051498 17051498 C T PLCL2 Silent p.V94V 0.56 TCGA-18-3409-01 3 172634134 172634134 C T SPATA16 Silent p.Q492Q 0.37 TCGA-18-3409-01 3 173525588 173525588 C T NLGN1 Silent p.I204I 0.42 TCGA-18-3409-01 3 174951718 174951718 C T NAALADL2 Intron 0.28 TCGA-18-3409-01 3 179069770 179069770 C T MFN1 Silent p.S65S 0.25 TCGA-18-3409-01 3 179537722 179537722 C T PEX5L Missense_Mutation p.E289K 0.26 tolerated(0.13) probably_damaging(0.998) TCGA-18-3409-01 3 180325560 180325560 C T TTC14 Intron 0.22 TCGA-18-3409-01 3 180359792 180359792 C T CCDC39 Silent p.R621R 0.34 TCGA-18-3409-01 3 183211925 183211925 C T KLHL6 Missense_Mutation p.G431D 0.29 deleterious(0) probably_damaging(1) TCGA-18-3409-01 3 183524833 183524833 C T YEATS2 Silent p.L1322L 0.31 TCGA-18-3409-01 3 183696426 183696426 C T ABCC5 Silent p.E387E 0.32 TCGA-18-3409-01 3 183700297 183700297 A T ABCC5 Missense_Mutation p.I314N 0.25 deleterious(0) possibly_damaging(0.797) TCGA-18-3409-01 3 183700298 183700298 T A ABCC5 Missense_Mutation p.I314F 0.27 tolerated(0.3) benign(0.03) TCGA-18-3409-01 3 183703145 183703145 G A ABCC5 Intron 0.27 TCGA-18-3409-01 3 184059850 184059850 C T FAM131A Intron 0.39 TCGA-18-3409-01 3 184071921 184071921 G A CLCN2 Silent p.P563P 0.33 TCGA-18-3409-01 3 184075218 184075218 C T CLCN2 Missense_Mutation p.R277Q 0.31 deleterious(0) probably_damaging(0.956) TCGA-18-3409-01 3 184106703 184106703 G A CHRD Missense_Mutation p.R911Q 0.14 deleterious(0.02) probably_damaging(0.996) TCGA-18-3409-01 3 185191163 185191163 C T MAP3K13 Missense_Mutation p.P682S 0.28 tolerated_low_confidence(0.17) probably_damaging(0.999) TCGA-18-3409-01 3 185960312 185960312 G A DGKG Missense_Mutation p.P603S 0.23 deleterious(0) probably_damaging(0.992) TCGA-18-3409-01 3 186522462 186522462 G A RFC4 Missense_Mutation p.P14L 0.39 tolerated(0.12) benign(0) TCGA-18-3409-01 3 186572227 186572227 C T ADIPOQ Silent p.L157L 0.30 TCGA-18-3409-01 3 186953544 186953544 G A MASP1 Silent p.S705S 0.44 TCGA-18-3409-01 3 186980425 186980425 G A MASP1 Silent p.V107V 0.31 TCGA-18-3409-01 3 188202419 188202419 C T LPP Missense_Mutation p.S78F 0.30 tolerated(0.25) benign(0.019) TCGA-18-3409-01 3 189587146 189587146 C T TP63 Missense_Mutation p.T388I 0.17 tolerated(0.08) benign(0.128) TCGA-18-3409-01 3 190106125 190106125 G A CLDN16 Missense_Mutation p.D73N 0.26 tolerated(0.2) benign(0.011) TCGA-18-3409-01 3 191093368 191093368 C T CCDC50 Silent p.L322L 0.35 TCGA-18-3409-01 3 192993070 192993070 C T ATP13A5 Missense_Mutation p.E1140K 0.28 tolerated(0.9) benign(0.002) TCGA-18-3409-01 3 194080933 194080933 G A LRRC15 Silent p.S286S 0.48 TCGA-18-3409-01 3 194147970 194147970 G A ATP13A3 Missense_Mutation p.P987S 0.21 tolerated(0.55) benign(0.002) TCGA-18-3409-01 3 195477834 195477834 C T MUC4 Missense_Mutation p.R5266Q 0.49 benign(0.067) TCGA-18-3409-01 3 195492231 195492231 G A MUC4 Missense_Mutation p.R4570W 0.30 benign(0.008) TCGA-18-3409-01 3 195507364 195507364 G A MUC4 Missense_Mutation p.P3696L 0.32 possibly_damaging(0.722) TCGA-18-3409-01 3 195508150 195508150 G A MUC4 Missense_Mutation p.S3434F 0.38 possibly_damaging(0.496) TCGA-18-3409-01 3 195510988 195510988 G A MUC4 Missense_Mutation p.S2488L 0.24 unknown(0) TCGA-18-3409-01 3 195511816 195511816 G A MUC4 Missense_Mutation p.T2212I 0.19 unknown(0) TCGA-18-3409-01 3 195512915 195512915 G A MUC4 Missense_Mutation p.P1846S 0.14 unknown(0) TCGA-18-3409-01 3 195698304 195698304 G A SDHAP1 RNA 0.13 TCGA-18-3409-01 3 197427768 197427768 G A KIAA0226 Missense_Mutation p.A326V 0.54 deleterious(0.01) probably_damaging(0.987) TCGA-18-3409-01 3 197574806 197574806 G A LRCH3 Missense_Mutation p.E482K 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-18-3409-01 3 197717443 197717443 C T LMLN Nonsense_Mutation p.Q315* 0.38 TCGA-18-3409-01 3 20178441 20178441 G T KAT2B Missense_Mutation p.G586V 0.60 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 3 2908551 2908551 G A CNTN4 Silent p.G190G 0.62 TCGA-18-3409-01 3 30827866 30827866 C T GADL1 Missense_Mutation p.G428E 0.43 tolerated(0.11) possibly_damaging(0.607) TCGA-18-3409-01 3 30827867 30827867 C T GADL1 Missense_Mutation p.G428R 0.41 deleterious(0) probably_damaging(0.988) TCGA-18-3409-01 3 33194171 33194171 C T SUSD5 3'UTR 0.40 TCGA-18-3409-01 3 36484932 36484932 G A STAC Missense_Mutation p.R63Q 0.63 deleterious(0) benign(0.011) TCGA-18-3409-01 3 36759619 36759619 G A DCLK3 Silent p.I545I 0.54 TCGA-18-3409-01 3 38052853 38052853 G A PLCD1 Silent p.I235I 0.56 TCGA-18-3409-01 3 38401830 38401830 G A XYLB Silent p.G47G 0.52 TCGA-18-3409-01 3 38539252 38539252 C T EXOG Missense_Mutation p.S99F 0.56 deleterious(0) probably_damaging(0.979) TCGA-18-3409-01 3 38539253 38539253 C T EXOG Silent p.S99S 0.55 TCGA-18-3409-01 3 38768417 38768417 G A SCN10A Missense_Mutation p.R923C 0.53 tolerated(0.17) benign(0.008) TCGA-18-3409-01 3 3887225 3887225 C T LRRN1 Silent p.L300L 0.59 TCGA-18-3409-01 3 38921496 38921496 C T SCN11A Missense_Mutation p.G1113E 0.33 deleterious(0) probably_damaging(1) TCGA-18-3409-01 3 38991823 38991823 G A SCN11A Missense_Mutation p.P11S 0.65 deleterious(0.01) probably_damaging(1) TCGA-18-3409-01 3 40433626 40433626 C T ENTPD3 Silent p.L51L 0.44 TCGA-18-3409-01 3 40433627 40433627 C T ENTPD3 Missense_Mutation p.P52S 0.44 tolerated(0.68) benign(0.008) TCGA-18-3409-01 3 41275037 41275037 C T CTNNB1 Silent p.L401L 0.51 TCGA-18-3409-01 3 41275038 41275038 C T CTNNB1 Missense_Mutation p.L402F 0.52 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 3 42738546 42738546 C T HHATL Silent p.L319L 0.59 TCGA-18-3409-01 3 42982759 42982759 G A KRBOX1 Silent p.T26T 0.46 TCGA-18-3409-01 3 44670823 44670823 C T ZNF197 Silent p.A59A 0.63 TCGA-18-3409-01 3 46568959 46568959 C G LRRC2 Missense_Mutation p.V296L 0.53 tolerated(0.13) benign(0.437) TCGA-18-3409-01 3 46568960 46568960 C T LRRC2 Silent p.L295L 0.54 TCGA-18-3409-01 3 47044477 47044477 C A NBEAL2 Silent p.S1830S 0.58 TCGA-18-3409-01 3 47465450 47465450 G A SCAP Silent p.L375L 0.59 TCGA-18-3409-01 3 48666117 48666117 G A SLC26A6 Missense_Mutation p.R544C 0.56 deleterious(0.01) probably_damaging(0.977) TCGA-18-3409-01 3 48692593 48692593 C T CELSR3 Silent p.K1624K 0.50 TCGA-18-3409-01 3 49052974 49052974 A T DALRD3 3'UTR 0.47 TCGA-18-3409-01 3 49095152 49095152 G A QRICH1 Missense_Mutation p.P161S 0.65 tolerated_low_confidence(0.24) benign(0.134) TCGA-18-3409-01 3 49570418 49570418 C T DAG1 Missense_Mutation p.P825L 0.62 deleterious(0) probably_damaging(1) TCGA-18-3409-01 3 49690811 49690811 C T BSN Silent p.S1274S 0.50 TCGA-18-3409-01 3 49698116 49698116 G A BSN Silent p.R2946R 0.56 TCGA-18-3409-01 3 49753120 49753120 C T RNF123 Silent p.F1041F 0.59 TCGA-18-3409-01 3 50153357 50153357 C T RBM5 Nonsense_Mutation p.R680* 0.81 TCGA-18-3409-01 3 50329943 50329943 G A IFRD2 5'Flank 0.47 TCGA-18-3409-01 3 51196713 51196713 C T DOCK3 Silent p.I289I 0.47 TCGA-18-3409-01 3 51673510 51673510 G A RAD54L2 Missense_Mutation p.E646K 0.55 deleterious(0.04) benign(0.045) TCGA-18-3409-01 3 52402765 52402765 G A DNAH1 Missense_Mutation p.G1925E 0.48 probably_damaging(1) TCGA-18-3409-01 3 52548474 52548474 C T STAB1 Missense_Mutation p.P1214S 0.62 tolerated(0.6) benign(0.023) TCGA-18-3409-01 3 52551008 52551008 C T STAB1 Missense_Mutation p.P1458S 0.68 tolerated(0.1) probably_damaging(0.982) TCGA-18-3409-01 3 52556435 52556435 G A STAB1 Silent p.L2185L 0.64 TCGA-18-3409-01 3 52563208 52563208 C T NT5DC2 Silent p.E125E 0.50 TCGA-18-3409-01 3 52820977 52820977 G A ITIH1 Missense_Mutation p.E584K 0.53 tolerated(0.12) benign(0.002) TCGA-18-3409-01 3 52842858 52842858 G A ITIH3 3'UTR 0.64 TCGA-18-3409-01 3 52852089 52852089 G A ITIH4 Silent p.L759L 0.54 TCGA-18-3409-01 3 53852089 53852089 G A CHDH Silent p.A500A 0.48 TCGA-18-3409-01 3 57902863 57902863 C T SLMAP Intron 0.65 TCGA-18-3409-01 3 62518605 62518605 G A CADPS Silent p.I744I 0.63 TCGA-18-3409-01 3 63594900 63594900 G A SYNPR Missense_Mutation p.E170K 0.57 tolerated(0.38) possibly_damaging(0.796) TCGA-18-3409-01 3 64589744 64589744 C T ADAMTS9 Missense_Mutation p.G1201S 0.57 deleterious(0) probably_damaging(1) TCGA-18-3409-01 3 64599030 64599030 G A ADAMTS9 Silent p.P1115P 0.57 TCGA-18-3409-01 3 64599031 64599031 G A ADAMTS9 Missense_Mutation p.P1115L 0.56 deleterious(0.01) probably_damaging(0.958) TCGA-18-3409-01 3 64627562 64627562 C T ADAMTS9 Silent p.G606G 0.62 TCGA-18-3409-01 3 69112186 69112186 G A UBA3 Silent p.L214L 0.55 TCGA-18-3409-01 3 73016739 73016739 G A GXYLT2 Missense_Mutation p.D340N 0.63 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 3 74349027 74349027 T C CNTN3 Missense_Mutation p.T720A 0.60 tolerated(0.11) probably_damaging(0.998) TCGA-18-3409-01 3 75786642 75786642 G A ZNF717 Missense_Mutation p.P711L 0.62 deleterious(0.01) benign(0) TCGA-18-3409-01 3 75786643 75786643 G A ZNF717 Missense_Mutation p.P711S 0.62 tolerated(0.19) benign(0) TCGA-18-3409-01 3 7620869 7620869 C T GRM7 Missense_Mutation p.S759F 0.61 deleterious(0.01) probably_damaging(0.998) TCGA-18-3409-01 3 89391077 89391077 C T EPHA3 Silent p.R381R 0.59 TCGA-18-3409-01 3 93615439 93615439 G A PROS1 Missense_Mutation p.R316C 0.23 deleterious(0) possibly_damaging(0.841) TCGA-18-3409-01 3 9517345 9517345 C T SETD5 Missense_Mutation p.S1300F 0.52 deleterious(0.01) possibly_damaging(0.497) TCGA-18-3409-01 3 97705818 97705818 C T GABRR3 Silent p.R371R 0.40 TCGA-18-3409-01 3 97711840 97711840 G A GABRR3 3'Flank 0.44 TCGA-18-3409-01 3 97806407 97806407 C T OR5AC2 Missense_Mutation p.P131S 0.26 deleterious(0.01) possibly_damaging(0.45) TCGA-18-3409-01 3 97868733 97868733 C T OR5H14 Silent p.F168F 0.30 TCGA-18-3409-01 3 97888478 97888478 C T OR5H15 Missense_Mutation p.S312L 0.55 tolerated_low_confidence(0.11) benign(0.005) TCGA-18-3409-01 3 97983680 97983680 C T OR5H6 Silent p.F184F 0.33 TCGA-18-3409-01 3 97984103 97984103 T A OR5H6 Silent p.V325V 0.31 TCGA-18-3409-01 3 98189177 98189177 G A OR5K1 Missense_Mutation p.G253R 0.23 deleterious(0) probably_damaging(0.951) TCGA-18-3409-01 3 98251939 98251939 G A GPR15 Silent p.R354R 0.23 TCGA-18-3409-01 3 9986197 9986197 C T CRELD1 3'UTR 0.77 TCGA-18-3409-01 4 100131365 100131365 G A ADH6 Silent p.F147F 0.36 TCGA-18-3409-01 4 100200657 100200657 C T ADH1A Silent p.L343L 0.26 TCGA-18-3409-01 4 100228963 100228963 G A ADH1B 3'UTR 0.29 TCGA-18-3409-01 4 100463283 100463283 G A C4orf17 3'UTR 0.20 TCGA-18-3409-01 4 100495985 100495985 C T MTTP 5'UTR 0.28 TCGA-18-3409-01 4 101109073 101109073 C T DDIT4L Missense_Mutation p.E115K 0.33 tolerated(0.12) benign(0.023) TCGA-18-3409-01 4 101109182 101109182 G A DDIT4L Silent p.V78V 0.37 TCGA-18-3409-01 4 103455017 103455017 T C NFKB1 Missense_Mutation p.L45P 0.24 deleterious(0) probably_damaging(0.997) TCGA-18-3409-01 4 109769932 109769932 C T COL25A1 Missense_Mutation p.G473R 0.40 deleterious(0) probably_damaging(0.971) TCGA-18-3409-01 4 113353610 113353610 C T ALPK1 Silent p.I969I 0.27 TCGA-18-3409-01 4 114257063 114257063 C T ANK2 Silent p.F1147F 0.34 TCGA-18-3409-01 4 114278065 114278065 G A ANK2 Missense_Mutation p.R2764K 0.37 benign(0.002) TCGA-18-3409-01 4 114680559 114680559 G A CAMK2D Missense_Mutation p.S26L 0.25 deleterious_low_confidence(0) benign(0.386) TCGA-18-3409-01 4 119158208 119158208 G A NDST3 Missense_Mutation p.D651N 0.33 tolerated(0.35) benign(0.119) TCGA-18-3409-01 4 119952491 119952491 T C SYNPO2 Missense_Mutation p.V854A 0.22 tolerated(1) benign(0) TCGA-18-3409-01 4 120085491 120085491 C T MYOZ2 Missense_Mutation p.P168S 0.44 tolerated(0.55) possibly_damaging(0.837) TCGA-18-3409-01 4 121957390 121957390 C T NDNF 3'UTR 0.32 TCGA-18-3409-01 4 122591138 122591138 G A ANXA5 Missense_Mutation p.L251F 0.29 tolerated(1) benign(0.02) TCGA-18-3409-01 4 122591139 122591139 G A ANXA5 Silent p.Y250Y 0.29 TCGA-18-3409-01 4 122682999 122682999 G T TMEM155 Missense_Mutation p.L14I 0.27 tolerated_low_confidence(0.12) benign(0.403) TCGA-18-3409-01 4 123239396 123239396 C T KIAA1109 Missense_Mutation p.R3589C 0.23 probably_damaging(0.994) TCGA-18-3409-01 4 123245614 123245614 T C KIAA1109 Silent p.S3609S 0.29 TCGA-18-3409-01 4 123260373 123260373 C T KIAA1109 Silent p.I4054I 0.43 TCGA-18-3409-01 4 123350819 123350819 G A ADAD1 Silent p.L552L 0.33 TCGA-18-3409-01 4 123838769 123838769 G A NUDT6 Missense_Mutation p.S110F 0.32 deleterious(0.01) possibly_damaging(0.691) TCGA-18-3409-01 4 123843641 123843641 G A NUDT6 Silent p.A29A 0.46 TCGA-18-3409-01 4 125592852 125592852 G A ANKRD50 Missense_Mutation p.S527F 0.32 deleterious(0.01) possibly_damaging(0.898) TCGA-18-3409-01 4 128812736 128812736 C T PLK4 Silent p.I646I 0.47 TCGA-18-3409-01 4 128854224 128854224 G A MFSD8 Missense_Mutation p.P260L 0.18 tolerated(0.09) benign(0.005) TCGA-18-3409-01 4 128854225 128854225 G A MFSD8 Missense_Mutation p.P260S 0.18 tolerated(0.28) benign(0.004) TCGA-18-3409-01 4 129192405 129192405 G A PGRMC2 3'UTR 0.33 TCGA-18-3409-01 4 13338256 13338256 T C HSP90AB2P RNA 0.44 TCGA-18-3409-01 4 134111337 134111337 G A PCDH10 3'UTR 0.45 TCGA-18-3409-01 4 134111347 134111347 G A PCDH10 3'UTR 0.39 TCGA-18-3409-01 4 138442614 138442614 C T PCDH18 Missense_Mutation p.D993N 0.27 tolerated(0.1) benign(0.014) TCGA-18-3409-01 4 140187956 140187956 C T MGARP Missense_Mutation p.E174K 0.47 deleterious(0.02) benign(0.356) TCGA-18-3409-01 4 143352413 143352413 G A INPP4B 5'UTR 0.20 TCGA-18-3409-01 4 145629326 145629326 C T HHIP Silent p.F388F 0.35 TCGA-18-3409-01 4 146823941 146823941 G A ZNF827 Missense_Mutation p.S157F 0.37 deleterious(0) probably_damaging(0.997) TCGA-18-3409-01 4 148441068 148441068 C T EDNRA Silent p.P162P 0.39 TCGA-18-3409-01 4 148539035 148539035 G A TMEM184C 5'UTR 0.32 TCGA-18-3409-01 4 152069115 152069115 G A SH3D19 Missense_Mutation p.P401S 0.31 deleterious(0) probably_damaging(0.928) TCGA-18-3409-01 4 153271243 153271243 G A FBXW7 Missense_Mutation p.R179C 0.43 deleterious_low_confidence(0) possibly_damaging(0.869) TCGA-18-3409-01 4 153692076 153692076 G A TIGD4 Silent p.I27I 0.38 TCGA-18-3409-01 4 153864526 153864526 C T FHDC1 Missense_Mutation p.P106L 0.26 deleterious(0) probably_damaging(1) TCGA-18-3409-01 4 154237038 154237038 C T TRIM2 Missense_Mutation p.P557S 0.12 tolerated(0.11) possibly_damaging(0.735) TCGA-18-3409-01 4 154625881 154625881 C T TLR2 Silent p.L608L 0.50 TCGA-18-3409-01 4 155156464 155156464 G A DCHS2 Missense_Mutation p.P2659S 0.36 deleterious(0.04) benign(0.4) TCGA-18-3409-01 4 155243554 155243554 A T DCHS2 Missense_Mutation p.Y914N 0.27 deleterious(0) probably_damaging(0.997) TCGA-18-3409-01 4 155278421 155278421 C T DCHS2 Silent p.K250K 0.25 TCGA-18-3409-01 4 155460272 155460272 A G PLRG1 Missense_Mutation p.V379A 0.36 tolerated(1) benign(0.019) TCGA-18-3409-01 4 155489637 155489637 G A FGB Missense_Mutation p.E275K 0.38 tolerated(0.53) benign(0.197) TCGA-18-3409-01 4 155506702 155506702 G A FGA Missense_Mutation p.R627C 0.28 deleterious(0.05) benign(0.032) TCGA-18-3409-01 4 156824933 156824933 G A TDO2 Missense_Mutation p.G8E 0.37 tolerated(0.22) benign(0.008) TCGA-18-3409-01 4 156849538 156849538 G A CTSO Missense_Mutation p.S294F 0.41 deleterious(0) probably_damaging(0.944) TCGA-18-3409-01 4 158224874 158224874 G A GRIA2 Missense_Mutation p.G134R 0.24 tolerated(0.45) possibly_damaging(0.719) TCGA-18-3409-01 4 158281079 158281079 G A GRIA2 Nonsense_Mutation p.W692* 0.49 TCGA-18-3409-01 4 159790431 159790431 C T FNIP2 Silent p.F881F 0.39 TCGA-18-3409-01 4 159825719 159825719 C T FNIP2 3'UTR 0.27 TCGA-18-3409-01 4 159825720 159825720 C T FNIP2 3'UTR 0.25 TCGA-18-3409-01 4 160277247 160277247 C T RAPGEF2 Missense_Mutation p.P1471S 0.22 tolerated_low_confidence(0.13) benign(0.044) TCGA-18-3409-01 4 160277248 160277248 C T RAPGEF2 Missense_Mutation p.P1471L 0.19 tolerated_low_confidence(0.26) benign(0.001) TCGA-18-3409-01 4 162697122 162697122 C T FSTL5 Missense_Mutation p.D172N 0.34 tolerated(0.46) benign(0.033) TCGA-18-3409-01 4 164272282 164272282 G A NPY5R Missense_Mutation p.R286K 0.20 tolerated(0.26) benign(0.014) TCGA-18-3409-01 4 164506934 164506934 G A MARCH1 Silent p.F130F 0.22 TCGA-18-3409-01 4 170506580 170506580 G A NEK1 Missense_Mutation p.P243S 0.23 deleterious(0.01) probably_damaging(0.988) TCGA-18-3409-01 4 175749928 175749928 G A GLRA3 Missense_Mutation p.S12L 0.26 tolerated_low_confidence(0.24) benign(0.001) TCGA-18-3409-01 4 175898683 175898683 G A ADAM29 Silent p.K669K 0.23 TCGA-18-3409-01 4 175899322 175899322 A T ADAM29 3'UTR 0.27 TCGA-18-3409-01 4 176561960 176561960 C T GPM6A Missense_Mutation p.E188K 0.29 tolerated(0.1) benign(0.002) TCGA-18-3409-01 4 177061074 177061074 G A WDR17 Nonsense_Mutation p.W488* 0.36 TCGA-18-3409-01 4 177073061 177073061 C T WDR17 Silent p.I825I 0.37 TCGA-18-3409-01 4 177138125 177138125 G A ASB5 Missense_Mutation p.P236S 0.28 deleterious(0) probably_damaging(0.973) TCGA-18-3409-01 4 183713580 183713580 G A TENM3 Missense_Mutation p.E1919K 0.20 deleterious(0.04) possibly_damaging(0.636) TCGA-18-3409-01 4 184932261 184932261 C T STOX2 Missense_Mutation p.S757F 0.54 deleterious_low_confidence(0) benign(0.11) TCGA-18-3409-01 4 186209226 186209226 G A SNX25 Silent p.K220K 0.44 TCGA-18-3409-01 4 186536046 186536046 C T SORBS2 Missense_Mutation p.G1041E 0.22 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 4 187131849 187131849 C T CYP4V2 3'UTR 0.35 TCGA-18-3409-01 4 187159513 187159513 G A KLKB1 Missense_Mutation p.E198K 0.25 tolerated(0.32) benign(0.031) TCGA-18-3409-01 4 187209801 187209801 G A F11 3'UTR 0.54 TCGA-18-3409-01 4 187584747 187584747 G A FAT1 Nonsense_Mutation p.R1096* 0.22 TCGA-18-3409-01 4 187629604 187629604 G A FAT1 Missense_Mutation p.P460S 0.39 benign(0.005) TCGA-18-3409-01 4 189012489 189012489 T C TRIML2 3'UTR 0.26 TCGA-18-3409-01 4 189061083 189061083 G A TRIML1 Missense_Mutation p.R124K 0.23 tolerated(0.25) benign(0.015) TCGA-18-3409-01 4 20525491 20525491 G A SLIT2 Silent p.K413K 0.28 TCGA-18-3409-01 4 20525678 20525678 A T SLIT2 Missense_Mutation p.K439M 0.30 deleterious(0) probably_damaging(0.992) TCGA-18-3409-01 4 20619197 20619197 G A SLIT2 Silent p.G1424G 0.34 TCGA-18-3409-01 4 2082703 2082703 G A POLN Missense_Mutation p.S790F 0.34 deleterious(0) probably_damaging(0.997) TCGA-18-3409-01 4 20884230 20884230 C T KCNIP4 Splice_Site p.X55_splice 0.27 TCGA-18-3409-01 4 2097593 2097593 C T POLN Missense_Mutation p.V684M 0.29 deleterious(0) probably_damaging(0.988) TCGA-18-3409-01 4 21699022 21699022 C T KCNIP4 Intron 0.38 TCGA-18-3409-01 4 2252429 2252429 C T MXD4 Splice_Site p.X158_splice 0.29 TCGA-18-3409-01 4 22749332 22749332 C T GBA3 Missense_Mutation p.P234S 0.28 tolerated(0.11) benign(0.003) TCGA-18-3409-01 4 25416277 25416277 C T ANAPC4 Missense_Mutation p.S594L 0.31 deleterious(0.02) benign(0.221) TCGA-18-3409-01 4 25819808 25819808 T G SEL1L3 Missense_Mutation p.K506Q 0.36 tolerated(0.11) benign(0.008) TCGA-18-3409-01 4 264881 264881 C T ZNF732 3'UTR 0.30 TCGA-18-3409-01 4 3021501 3021501 A T GRK4 Missense_Mutation p.Y292F 0.29 deleterious(0.04) probably_damaging(0.949) TCGA-18-3409-01 4 3188395 3188395 C T HTT Silent p.L1646L 0.25 TCGA-18-3409-01 4 3188396 3188396 C T HTT Missense_Mutation p.R1647C 0.24 probably_damaging(0.995) TCGA-18-3409-01 4 338216 338216 C T ZNF141 Missense_Mutation p.P75S 0.35 tolerated(0.11) possibly_damaging(0.857) TCGA-18-3409-01 4 3514746 3514746 C T LRPAP1 Silent p.Q343Q 0.41 TCGA-18-3409-01 4 367492 367492 C T ZNF141 Silent p.P422P 0.40 TCGA-18-3409-01 4 38091726 38091726 C T TBC1D1 Nonsense_Mutation p.Q742* 0.33 TCGA-18-3409-01 4 38775613 38775613 G A TLR10 Silent p.F533F 0.23 TCGA-18-3409-01 4 39409003 39409003 G A KLB Missense_Mutation p.G145E 0.30 deleterious(0) probably_damaging(1) TCGA-18-3409-01 4 40245121 40245121 G A RHOH Missense_Mutation p.E39K 0.32 deleterious(0) possibly_damaging(0.593) TCGA-18-3409-01 4 40832492 40832492 C T APBB2 Silent p.E544E 0.28 TCGA-18-3409-01 4 420665 420665 G A ABCA11P RNA 0.17 TCGA-18-3409-01 4 42119665 42119665 C T BEND4 Missense_Mutation p.G492D 0.19 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-18-3409-01 4 42895559 42895559 T C GRXCR1 Silent p.F92F 0.33 TCGA-18-3409-01 4 4314796 4314796 G A ZBTB49 Missense_Mutation p.R444Q 0.38 deleterious(0.02) probably_damaging(0.998) TCGA-18-3409-01 4 46066475 46066475 G A GABRG1 Missense_Mutation p.P203L 0.38 deleterious(0) probably_damaging(0.977) TCGA-18-3409-01 4 46252353 46252353 C T GABRA2 Missense_Mutation p.R443K 0.48 tolerated(0.45) benign(0.071) TCGA-18-3409-01 4 47559988 47559988 C T ATP10D Missense_Mutation p.S711F 0.27 deleterious(0.02) possibly_damaging(0.722) TCGA-18-3409-01 4 47682236 47682236 C T CORIN Missense_Mutation p.D352N 0.14 tolerated(0.2) probably_damaging(0.99) TCGA-18-3409-01 4 47942791 47942791 C T CNGA1 Missense_Mutation p.R287Q 0.29 tolerated(0.2) probably_damaging(0.98) TCGA-18-3409-01 4 48073677 48073677 C T TXK Missense_Mutation p.E458K 0.26 deleterious(0) probably_damaging(1) TCGA-18-3409-01 4 48088613 48088613 C T TXK Missense_Mutation p.E276K 0.26 deleterious(0.01) benign(0.024) TCGA-18-3409-01 4 48169961 48169961 G A TEC Missense_Mutation p.P169S 0.41 tolerated(0.82) possibly_damaging(0.886) TCGA-18-3409-01 4 48906512 48906512 G A OCIAD2 Missense_Mutation p.P19S 0.27 tolerated(0.29) benign(0.007) TCGA-18-3409-01 4 49052864 49052864 C T CWH43 Silent p.P673P 0.26 TCGA-18-3409-01 4 53476783 53476783 C G USP46 Missense_Mutation p.V188L 0.47 deleterious(0.04) benign(0.098) TCGA-18-3409-01 4 54440061 54440061 C T LNX1 Missense_Mutation p.D37N 0.38 deleterious(0) probably_damaging(1) TCGA-18-3409-01 4 5468460 5468460 G A STK32B Missense_Mutation p.E314K 0.22 deleterious(0) probably_damaging(0.993) TCGA-18-3409-01 4 55564553 55564553 C T KIT Silent p.S147S 0.24 TCGA-18-3409-01 4 5624517 5624517 C T EVC2 Missense_Mutation p.E750K 0.42 tolerated(0.07) benign(0.359) TCGA-18-3409-01 4 56342189 56342189 G A CLOCK Nonsense_Mutation p.R97* 0.44 TCGA-18-3409-01 4 5664932 5664932 G A EVC2 Silent p.T349T 0.32 TCGA-18-3409-01 4 57180318 57180318 C T KIAA1211 Missense_Mutation p.S217F 0.19 tolerated(0.06) probably_damaging(0.93) TCGA-18-3409-01 4 57797662 57797662 C T REST Nonsense_Mutation p.Q880* 0.40 TCGA-18-3409-01 4 5966796 5966796 G A C4orf50 Silent p.P652P 0.31 TCGA-18-3409-01 4 6114460 6114460 C T JAKMIP1 Missense_Mutation p.E40K 0.38 deleterious(0) probably_damaging(0.997) TCGA-18-3409-01 4 6302909 6302909 G A WFS1 Missense_Mutation p.V463I 0.46 tolerated(0.11) benign(0.05) TCGA-18-3409-01 4 66233105 66233105 C T EPHA5 Missense_Mutation p.E632K 0.30 tolerated(0.09) probably_damaging(0.952) TCGA-18-3409-01 4 678526 678526 G A MFSD7 Silent p.F235F 0.37 TCGA-18-3409-01 4 68719814 68719814 C T TMPRSS11D Missense_Mutation p.R74K 0.26 tolerated(0.06) benign(0.252) TCGA-18-3409-01 4 68788546 68788546 C T TMPRSS11A Missense_Mutation p.D210N 0.32 tolerated(0.52) benign(0.001) TCGA-18-3409-01 4 68930597 68930597 C T TMPRSS11F Missense_Mutation p.R274Q 0.42 tolerated(0.13) possibly_damaging(0.528) TCGA-18-3409-01 4 69362601 69362601 G A TMPRSS11E 3'UTR 0.24 TCGA-18-3409-01 4 69533906 69533906 C T UGT2B15 Missense_Mutation p.G242E 0.36 deleterious(0.01) possibly_damaging(0.558) TCGA-18-3409-01 4 69817217 69817217 C T UGT2A3 Missense_Mutation p.E88K 0.26 tolerated(0.52) benign(0.01) TCGA-18-3409-01 4 70361096 70361096 C T UGT2B4 Missense_Mutation p.E162K 0.26 deleterious(0.03) benign(0.127) TCGA-18-3409-01 4 70513040 70513040 T A UGT2A1 Missense_Mutation p.Y108F 0.23 tolerated(0.66) probably_damaging(0.975) TCGA-18-3409-01 4 70710047 70710047 C T SULT1E1 Missense_Mutation p.E202K 0.26 deleterious(0) probably_damaging(1) TCGA-18-3409-01 4 70826673 70826673 A G CSN2 Missense_Mutation p.L14P 0.16 deleterious(0.01) unknown(0) TCGA-18-3409-01 4 71201725 71201725 C T CABS1 Silent p.F323F 0.37 TCGA-18-3409-01 4 71255408 71255408 G A SMR3B Missense_Mutation p.G28E 0.27 deleterious_low_confidence(0.02) unknown(0) TCGA-18-3409-01 4 71510361 71510361 C T ENAM Missense_Mutation p.P1073L 0.27 deleterious(0.02) benign(0.315) TCGA-18-3409-01 4 71527909 71527909 G A IGJ Missense_Mutation p.L30F 0.37 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 4 71672244 71672244 G A RUFY3 Silent p.K577K 0.29 TCGA-18-3409-01 4 73013255 73013255 C T NPFFR2 Missense_Mutation p.P432L 0.38 deleterious(0) probably_damaging(1) TCGA-18-3409-01 4 73013580 73013580 C T NPFFR2 3'UTR 0.35 TCGA-18-3409-01 4 73169723 73169723 C T ADAMTS3 Missense_Mutation p.D779N 0.29 tolerated(0.12) benign(0.288) TCGA-18-3409-01 4 73986639 73986639 G A ANKRD17 Missense_Mutation p.L1270F 0.20 probably_damaging(0.98) TCGA-18-3409-01 4 74270067 74270067 C T ALB Missense_Mutation p.S8F 0.41 tolerated(0.51) benign(0.077) TCGA-18-3409-01 4 74283961 74283961 G A ALB Missense_Mutation p.E529K 0.27 tolerated(0.31) benign(0.005) TCGA-18-3409-01 4 74863790 74863790 C T CXCL5 Missense_Mutation p.E89K 0.30 tolerated(0.32) possibly_damaging(0.676) TCGA-18-3409-01 4 75937898 75937898 G A PARM1 Missense_Mutation p.D103N 0.46 tolerated(0.13) benign(0.025) TCGA-18-3409-01 4 76551160 76551160 C T CDKL2 Missense_Mutation p.E5K 0.36 deleterious(0) probably_damaging(0.944) TCGA-18-3409-01 4 76943560 76943560 C T CXCL10 Silent p.S79S 0.32 TCGA-18-3409-01 4 77003049 77003049 G A ART3 Missense_Mutation p.E48K 0.28 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 4 77278671 77278671 C T CCDC158 Missense_Mutation p.E677K 0.37 deleterious(0) benign(0.033) TCGA-18-3409-01 4 80328210 80328210 C T GK2 Missense_Mutation p.G382D 0.28 deleterious(0) probably_damaging(1) TCGA-18-3409-01 4 82095970 82095970 C T PRKG2 Missense_Mutation p.G202E 0.33 deleterious(0) probably_damaging(1) TCGA-18-3409-01 4 8229801 8229801 C T SH3TC1 Nonsense_Mutation p.Q794* 0.36 TCGA-18-3409-01 4 83626521 83626521 G A SCD5 Missense_Mutation p.A93V 0.30 tolerated(0.12) possibly_damaging(0.573) TCGA-18-3409-01 4 84374945 84374945 C T HELQ Missense_Mutation p.E151K 0.28 tolerated_low_confidence(0.16) benign(0.004) TCGA-18-3409-01 4 84374946 84374946 C T HELQ Silent p.S150S 0.29 TCGA-18-3409-01 4 84377157 84377157 C T MRPS18C 5'UTR 0.49 TCGA-18-3409-01 4 84377179 84377179 G A MRPS18C 5'UTR 0.27 TCGA-18-3409-01 4 85416988 85416988 G A NKX6-1 Missense_Mutation p.S227F 0.43 deleterious(0.02) unknown(0) TCGA-18-3409-01 4 86852138 86852138 C T ARHGAP24 Intron 0.27 TCGA-18-3409-01 4 87610231 87610231 C T PTPN13 Missense_Mutation p.S145F 0.39 deleterious(0) probably_damaging(0.979) TCGA-18-3409-01 4 88056849 88056849 C T AFF1 Missense_Mutation p.P1218L 0.35 deleterious(0) unknown(0) TCGA-18-3409-01 4 88532087 88532087 T G DSPP Missense_Mutation p.I9M 0.35 probably_damaging(0.992) TCGA-18-3409-01 4 88732595 88732595 G A IBSP Missense_Mutation p.E163K 0.42 deleterious(0.04) benign(0.072) TCGA-18-3409-01 4 88732970 88732970 G A IBSP Missense_Mutation p.D288N 0.33 deleterious(0) probably_damaging(1) TCGA-18-3409-01 4 88902860 88902860 C T SPP1 Silent p.V150V 0.29 TCGA-18-3409-01 4 89363642 89363642 C T HERC6 3'UTR 0.34 TCGA-18-3409-01 4 89383489 89383489 G A HERC5 Missense_Mutation p.G224S 0.29 deleterious(0.04) probably_damaging(1) TCGA-18-3409-01 4 89591352 89591352 C T HERC3 Silent p.L620L 0.29 TCGA-18-3409-01 4 89627996 89627996 C T HERC3 Missense_Mutation p.P1013L 0.23 deleterious(0) probably_damaging(1) TCGA-18-3409-01 4 90857133 90857133 G A MMRN1 Missense_Mutation p.D768N 0.40 tolerated(1) benign(0) TCGA-18-3409-01 4 96090342 96090342 C T UNC5C 3'UTR 0.46 TCGA-18-3409-01 4 96140178 96140178 G A UNC5C Silent p.S529S 0.29 TCGA-18-3409-01 4 96163714 96163714 C T UNC5C Nonsense_Mutation p.W325* 0.33 TCGA-18-3409-01 4 96256570 96256570 C T UNC5C Missense_Mutation p.E113K 0.23 tolerated(0.29) benign(0.038) TCGA-18-3409-01 4 96762081 96762081 T C PDHA2 Silent p.V260V 0.45 TCGA-18-3409-01 4 9784494 9784494 G A DRD5 Missense_Mutation p.D281N 0.22 tolerated(0.11) benign(0.009) TCGA-18-3409-01 4 9784694 9784694 C T DRD5 Silent p.F347F 0.27 TCGA-18-3409-01 4 9784866 9784866 G A DRD5 Missense_Mutation p.E405K 0.40 deleterious(0.04) benign(0.213) TCGA-18-3409-01 4 99403161 99403161 C T TSPAN5 Missense_Mutation p.E149K 0.18 tolerated(0.39) possibly_damaging(0.794) TCGA-18-3409-01 4 99823128 99823128 G A EIF4E Silent p.T8T 0.20 TCGA-18-3409-01 5 101735366 101735366 C T SLCO6A1 Silent p.G569G 0.21 TCGA-18-3409-01 5 101748834 101748834 C T SLCO6A1 Missense_Mutation p.G496R 0.10 deleterious(0.04) probably_damaging(0.997) TCGA-18-3409-01 5 10426588 10426588 C T MARCH6 Silent p.S820S 0.29 TCGA-18-3409-01 5 1087030 1087030 G A SLC12A7 Silent p.I221I 0.26 TCGA-18-3409-01 5 1093770 1093770 C T SLC12A7 Missense_Mutation p.E74K 0.43 deleterious(0) probably_damaging(0.927) TCGA-18-3409-01 5 110096976 110096976 G A SLC25A46 Missense_Mutation p.G251R 0.11 deleterious(0.03) benign(0.397) TCGA-18-3409-01 5 11022941 11022941 G A CTNND2 Missense_Mutation p.A980V 0.23 tolerated(0.06) benign(0.079) TCGA-18-3409-01 5 110428113 110428113 C T WDR36 Missense_Mutation p.P43S 0.28 tolerated_low_confidence(0.32) benign(0) TCGA-18-3409-01 5 11082931 11082931 G A CTNND2 Nonsense_Mutation p.R889* 0.26 TCGA-18-3409-01 5 111504718 111504718 C T EPB41L4A Silent p.G608G 0.27 TCGA-18-3409-01 5 111598199 111598199 G A EPB41L4A Missense_Mutation p.P212S 0.43 deleterious(0) probably_damaging(0.948) TCGA-18-3409-01 5 113798813 113798813 C T KCNN2 Missense_Mutation p.L357F 0.41 deleterious(0.02) possibly_damaging(0.659) TCGA-18-3409-01 5 113822850 113822850 G A KCNN2 Missense_Mutation p.R453Q 0.40 deleterious(0.02) possibly_damaging(0.835) TCGA-18-3409-01 5 11411723 11411723 C T CTNND2 Missense_Mutation p.E122K 0.21 tolerated(0.16) benign(0.241) TCGA-18-3409-01 5 114499374 114499374 G A TRIM36 Missense_Mutation p.P47S 0.22 deleterious(0) probably_damaging(1) TCGA-18-3409-01 5 118513065 118513065 A G DMXL1 Missense_Mutation p.N2258D 0.27 deleterious(0.03) possibly_damaging(0.735) TCGA-18-3409-01 5 118533536 118533536 C T DMXL1 Missense_Mutation p.H2544Y 0.20 tolerated(0.54) benign(0.001) TCGA-18-3409-01 5 118728999 118728999 C T TNFAIP8 Missense_Mutation p.P174S 0.37 tolerated(0.25) possibly_damaging(0.822) TCGA-18-3409-01 5 120022157 120022157 G A PRR16 Missense_Mutation p.R200Q 0.20 tolerated_low_confidence(0.7) benign(0.346) TCGA-18-3409-01 5 1208984 1208984 C T SLC6A19 Missense_Mutation p.P109L 0.32 deleterious(0) benign(0.262) TCGA-18-3409-01 5 121187651 121187651 G C FTMT 5'UTR 0.29 TCGA-18-3409-01 5 121187993 121187993 C T FTMT Missense_Mutation p.S112F 0.44 deleterious(0.02) benign(0.041) TCGA-18-3409-01 5 121187994 121187994 C T FTMT Silent p.S112S 0.44 TCGA-18-3409-01 5 121188068 121188068 G A FTMT Missense_Mutation p.G137E 0.23 deleterious(0) probably_damaging(1) TCGA-18-3409-01 5 121188234 121188234 C T FTMT Silent p.F192F 0.39 TCGA-18-3409-01 5 121356383 121356383 A T SRFBP1 Missense_Mutation p.D318V 0.36 deleterious(0.03) benign(0.209) TCGA-18-3409-01 5 121488583 121488583 C T ZNF474 Silent p.L300L 0.29 TCGA-18-3409-01 5 1222025 1222025 C T SLC6A19 3'UTR 0.15 TCGA-18-3409-01 5 1222026 1222026 C T SLC6A19 3'UTR 0.15 TCGA-18-3409-01 5 123974901 123974901 G A ZNF608 Missense_Mutation p.T1486I 0.50 deleterious(0.01) probably_damaging(0.996) TCGA-18-3409-01 5 127448533 127448533 G A SLC12A2 Missense_Mutation p.G262R 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-18-3409-01 5 127648327 127648327 G A FBN2 Silent p.S1626S 0.39 TCGA-18-3409-01 5 128440726 128440726 C T ISOC1 Silent p.A129A 0.31 TCGA-18-3409-01 5 128844924 128844924 G A ADAMTS19 Missense_Mutation p.G295D 0.19 deleterious(0.01) possibly_damaging(0.459) TCGA-18-3409-01 5 130828461 130828461 G A RAPGEF6 Silent p.L515L 0.31 TCGA-18-3409-01 5 132015469 132015469 C T IL4 Missense_Mutation p.H83Y 0.37 deleterious(0.01) probably_damaging(0.961) TCGA-18-3409-01 5 132150955 132150955 A G SOWAHA Missense_Mutation p.T548A 0.33 tolerated_low_confidence(0.59) benign(0.002) TCGA-18-3409-01 5 134782807 134782807 G A TIFAB 3'UTR 0.25 TCGA-18-3409-01 5 135692782 135692782 C T TRPC7 Silent p.L98L 0.45 TCGA-18-3409-01 5 13692077 13692077 G A DNAH5 3'UTR 0.27 TCGA-18-3409-01 5 13737373 13737373 C T DNAH5 Missense_Mutation p.E3815K 0.25 benign(0.292) TCGA-18-3409-01 5 13752308 13752308 C T DNAH5 Missense_Mutation p.E3655K 0.15 benign(0.008) TCGA-18-3409-01 5 137682482 137682482 C T FAM53C Missense_Mutation p.P338L 0.38 tolerated(0.06) probably_damaging(0.958) TCGA-18-3409-01 5 13820578 13820578 G T DNAH5 Missense_Mutation p.P2240T 0.34 possibly_damaging(0.641) TCGA-18-3409-01 5 138860758 138860758 G A TMEM173 Missense_Mutation p.L133F 0.29 tolerated(0.06) benign(0.178) TCGA-18-3409-01 5 138860759 138860759 G T TMEM173 Silent p.I132I 0.28 TCGA-18-3409-01 5 13911603 13911603 C T DNAH5 Splice_Site p.X513_splice 0.25 TCGA-18-3409-01 5 139193033 139193033 G A PSD2 Missense_Mutation p.D171N 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-18-3409-01 5 139946784 139946784 C T SLC35A4 Silent p.G10G 0.33 TCGA-18-3409-01 5 139946785 139946785 C T SLC35A4 Silent p.L11L 0.31 TCGA-18-3409-01 5 140032629 140032629 C T IK Missense_Mutation p.R102C 0.14 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 5 140075750 140075750 C T HARS2 Silent p.F232F 0.12 TCGA-18-3409-01 5 140167790 140167790 G A PCDHA1 Missense_Mutation p.E639K 0.22 deleterious_low_confidence(0) possibly_damaging(0.821) TCGA-18-3409-01 5 140175978 140175978 G A PCDHA2 Missense_Mutation p.V477M 0.21 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-18-3409-01 5 140180932 140180932 G A PCDHA3 Silent p.Q50Q 0.23 TCGA-18-3409-01 5 140181435 140181435 G A PCDHA3 Missense_Mutation p.G218E 0.41 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-18-3409-01 5 140182175 140182175 A C PCDHA3 Missense_Mutation p.K465Q 0.29 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-18-3409-01 5 140182444 140182444 C T PCDHA3 Silent p.F554F 0.43 TCGA-18-3409-01 5 140182609 140182609 T A PCDHA3 Nonsense_Mutation p.Y609* 0.44 TCGA-18-3409-01 5 140187398 140187398 T G PCDHA4 Missense_Mutation p.F209C 0.38 deleterious_low_confidence(0.03) possibly_damaging(0.617) TCGA-18-3409-01 5 140188168 140188168 G A PCDHA4 Missense_Mutation p.E466K 0.21 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-18-3409-01 5 140188245 140188245 C T PCDHA4 Silent p.S491S 0.17 TCGA-18-3409-01 5 140188728 140188728 G A PCDHA4 Silent p.K652K 0.20 TCGA-18-3409-01 5 140207721 140207721 C T PCDHA6 Silent p.L15L 0.33 TCGA-18-3409-01 5 140209114 140209114 C G PCDHA6 Missense_Mutation p.R480G 0.21 deleterious_low_confidence(0.04) benign(0.159) TCGA-18-3409-01 5 140214048 140214048 G A PCDHA7 Missense_Mutation p.G27E 0.18 deleterious_low_confidence(0.01) benign(0.396) TCGA-18-3409-01 5 140214425 140214425 C T PCDHA7 Missense_Mutation p.P153S 0.33 tolerated_low_confidence(0.09) benign(0.294) TCGA-18-3409-01 5 140221176 140221176 C T PCDHA8 Silent p.I90I 0.21 TCGA-18-3409-01 5 140222611 140222611 C T PCDHA8 Missense_Mutation p.R569W 0.15 tolerated_low_confidence(0.23) benign(0.004) TCGA-18-3409-01 5 140222729 140222729 C T PCDHA8 Missense_Mutation p.S608L 0.50 tolerated_low_confidence(0.05) benign(0.411) TCGA-18-3409-01 5 140229200 140229200 G T PCDHA9 Missense_Mutation p.V374L 0.15 tolerated_low_confidence(0.06) benign(0.439) TCGA-18-3409-01 5 140229371 140229371 G A PCDHA9 Missense_Mutation p.G431S 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.629) TCGA-18-3409-01 5 140229634 140229634 C T PCDHA9 Silent p.Y518Y 0.16 TCGA-18-3409-01 5 140229833 140229833 G A PCDHA9 Missense_Mutation p.V585M 0.21 deleterious_low_confidence(0.01) benign(0.363) TCGA-18-3409-01 5 140235755 140235755 G A PCDHA10 Missense_Mutation p.G41D 0.32 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-18-3409-01 5 140237067 140237067 G C PCDHA10 Silent p.A478A 0.26 TCGA-18-3409-01 5 140255160 140255160 G A PCDHA12 Missense_Mutation p.V35I 0.37 tolerated_low_confidence(0.21) benign(0.276) TCGA-18-3409-01 5 140262269 140262269 G A PCDHA13 Missense_Mutation p.R139Q 0.27 tolerated_low_confidence(0.25) benign(0.187) TCGA-18-3409-01 5 140307343 140307343 A T PCDHAC1 Missense_Mutation p.K289I 0.39 deleterious(0.02) benign(0.085) TCGA-18-3409-01 5 140308116 140308116 G A PCDHAC1 Missense_Mutation p.D547N 0.41 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 5 140308458 140308458 C T PCDHAC1 Missense_Mutation p.P661S 0.24 tolerated(0.27) benign(0.045) TCGA-18-3409-01 5 140432413 140432413 G A PCDHB1 Missense_Mutation p.R453Q 0.43 tolerated(0.11) benign(0) TCGA-18-3409-01 5 140432738 140432738 G A PCDHB1 Missense_Mutation p.M561I 0.20 deleterious(0.01) benign(0.028) TCGA-18-3409-01 5 140475885 140475885 C T PCDHB2 Missense_Mutation p.S504F 0.32 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-18-3409-01 5 140480792 140480792 G A PCDHB3 Missense_Mutation p.D187N 0.36 deleterious_low_confidence(0.03) benign(0.067) TCGA-18-3409-01 5 140502125 140502125 G A PCDHB4 Missense_Mutation p.R182Q 0.29 tolerated_low_confidence(0.24) benign(0.113) TCGA-18-3409-01 5 140531103 140531103 C T PCDHB6 Missense_Mutation p.T422I 0.23 deleterious(0.03) benign(0.038) TCGA-18-3409-01 5 140531131 140531131 C T PCDHB6 Silent p.T431T 0.42 TCGA-18-3409-01 5 140553593 140553593 C T PCDHB7 Silent p.L393L 0.19 TCGA-18-3409-01 5 140558451 140558451 C T PCDHB8 Missense_Mutation p.S279F 0.15 tolerated_low_confidence(0.07) benign(0.027) TCGA-18-3409-01 5 140572150 140572150 C T PCDHB10 Missense_Mutation p.P9S 0.36 tolerated_low_confidence(0.28) benign(0.015) TCGA-18-3409-01 5 140573133 140573133 A T PCDHB10 Missense_Mutation p.E336D 0.18 deleterious_low_confidence(0.03) benign(0.005) TCGA-18-3409-01 5 140579777 140579777 G T PCDHB11 Nonsense_Mutation p.E144* 0.21 TCGA-18-3409-01 5 140588952 140588952 A T PCDHB12 Missense_Mutation p.K158M 0.19 deleterious_low_confidence(0) benign(0.158) TCGA-18-3409-01 5 140589097 140589097 G A PCDHB12 Silent p.P206P 0.20 TCGA-18-3409-01 5 140595771 140595771 G T PCDHB13 Silent p.V692V 0.22 TCGA-18-3409-01 5 140616319 140616319 C A PCDHB18 RNA 0.46 TCGA-18-3409-01 5 140710553 140710553 C T PCDHGA1 Missense_Mutation p.P101L 0.24 tolerated_low_confidence(0.08) benign(0.009) TCGA-18-3409-01 5 140724155 140724155 C T PCDHGA3 Silent p.V185V 0.41 TCGA-18-3409-01 5 140724881 140724881 G A PCDHGA3 Silent p.G427G 0.38 TCGA-18-3409-01 5 140725985 140725985 G A PCDHGA3 Silent p.Q795Q 0.35 TCGA-18-3409-01 5 140731289 140731289 C T PCDHGB1 Silent p.L488L 0.34 TCGA-18-3409-01 5 140736714 140736714 T A PCDHGA4 Missense_Mutation p.H649Q 0.46 deleterious_low_confidence(0) possibly_damaging(0.872) TCGA-18-3409-01 5 140741210 140741210 C T PCDHGB2 Missense_Mutation p.S503F 0.37 deleterious(0) probably_damaging(0.992) TCGA-18-3409-01 5 140745898 140745898 G A PCDHGA5 Silent p.R667R 0.39 TCGA-18-3409-01 5 140750391 140750391 G A PCDHGB3 Missense_Mutation p.E144K 0.20 deleterious(0) probably_damaging(1) TCGA-18-3409-01 5 140750795 140750795 C T PCDHGB3 Silent p.I278I 0.38 TCGA-18-3409-01 5 140751743 140751743 G A PCDHGB3 Silent p.V594V 0.15 TCGA-18-3409-01 5 140751831 140751831 G A PCDHGB3 Missense_Mutation p.G624S 0.41 deleterious(0.01) probably_damaging(1) TCGA-18-3409-01 5 140754622 140754622 G A PCDHGA6 Silent p.G324G 0.25 TCGA-18-3409-01 5 140754633 140754633 G A PCDHGA6 Missense_Mutation p.R328Q 0.23 tolerated_low_confidence(0.21) benign(0.007) TCGA-18-3409-01 5 140755921 140755921 C T PCDHGA6 Silent p.V757V 0.37 TCGA-18-3409-01 5 140762539 140762539 G A PCDHGA7 Missense_Mutation p.E25K 0.26 tolerated_low_confidence(0.17) benign(0.022) TCGA-18-3409-01 5 140762560 140762560 C T PCDHGA7 Missense_Mutation p.L32F 0.23 deleterious_low_confidence(0.02) benign(0.008) TCGA-18-3409-01 5 140762865 140762865 C T PCDHGA7 Silent p.F133F 0.50 TCGA-18-3409-01 5 140763547 140763547 C T PCDHGA7 Missense_Mutation p.P361S 0.37 tolerated_low_confidence(0.12) benign(0.219) TCGA-18-3409-01 5 140784579 140784579 C T PCDHGA9 Missense_Mutation p.S687L 0.17 deleterious_low_confidence(0.01) benign(0.168) TCGA-18-3409-01 5 140784793 140784793 C T PCDHGA9 Silent p.S758S 0.37 TCGA-18-3409-01 5 140802420 140802420 C T PCDHGA11 Silent p.P542P 0.37 TCGA-18-3409-01 5 140802924 140802924 C T PCDHGA11 Silent p.I710I 0.12 TCGA-18-3409-01 5 141052628 141052628 G A ARAP3 Nonsense_Mutation p.Q349* 0.40 TCGA-18-3409-01 5 141052630 141052630 A T ARAP3 Missense_Mutation p.F348Y 0.44 deleterious(0) probably_damaging(0.938) TCGA-18-3409-01 5 141243174 141243174 C T PCDH1 Missense_Mutation p.G908R 0.41 tolerated(0.36) possibly_damaging(0.641) TCGA-18-3409-01 5 141244804 141244804 G A PCDH1 Silent p.T364T 0.28 TCGA-18-3409-01 5 141335809 141335809 G A PCDH12 Silent p.I536I 0.35 TCGA-18-3409-01 5 1422015 1422015 C T SLC6A3 Nonsense_Mutation p.W256* 0.22 TCGA-18-3409-01 5 14286983 14286983 G A TRIO Silent p.E117E 0.16 TCGA-18-3409-01 5 14498737 14498737 C T TRIO Silent p.L2774L 0.16 TCGA-18-3409-01 5 145383661 145383661 G A SH3RF2 Nonsense_Mutation p.W230* 0.17 TCGA-18-3409-01 5 146754755 146754755 G A STK32A Missense_Mutation p.D336N 0.56 tolerated(0.14) benign(0.21) TCGA-18-3409-01 5 147040805 147040805 G A JAKMIP2 Silent p.I111I 0.31 TCGA-18-3409-01 5 147480126 147480126 C T SPINK5 Missense_Mutation p.S401F 0.32 tolerated(0.18) benign(0.328) TCGA-18-3409-01 5 147795619 147795619 C T FBXO38 Missense_Mutation p.R465C 0.20 deleterious(0) probably_damaging(0.995) TCGA-18-3409-01 5 148207179 148207179 C T ADRB2 Missense_Mutation p.S262F 0.13 tolerated(0.11) benign(0.345) TCGA-18-3409-01 5 149216068 149216068 C T PPARGC1B Missense_Mutation p.P684S 0.36 deleterious(0.04) benign(0.08) TCGA-18-3409-01 5 149449569 149449569 G A CSF1R Silent p.S459S 0.17 TCGA-18-3409-01 5 149676783 149676783 C T ARSI Silent p.R568R 0.36 TCGA-18-3409-01 5 150276412 150276412 C T ZNF300 Missense_Mutation p.G146D 0.44 tolerated(0.85) benign(0.003) TCGA-18-3409-01 5 150278106 150278106 G A ZNF300 Missense_Mutation p.S25L 0.26 deleterious(0) benign(0.146) TCGA-18-3409-01 5 150856202 150856202 C T SLC36A1 Silent p.L292L 0.26 TCGA-18-3409-01 5 150945550 150945550 G A FAT2 Silent p.L981L 0.28 TCGA-18-3409-01 5 150946443 150946443 G A FAT2 Missense_Mutation p.L684F 0.42 benign(0.013) TCGA-18-3409-01 5 150947368 150947368 G A FAT2 Silent p.S375S 0.57 TCGA-18-3409-01 5 151771664 151771664 C T NMUR2 3'UTR 0.61 TCGA-18-3409-01 5 153796373 153796373 G A GALNT10 Splice_Site p.X552_splice 0.31 TCGA-18-3409-01 5 153796374 153796374 G A GALNT10 Missense_Mutation p.D552N 0.33 tolerated(0.2) possibly_damaging(0.826) TCGA-18-3409-01 5 153830692 153830692 C T SAP30L Silent p.I81I 0.53 TCGA-18-3409-01 5 154287306 154287306 G A GEMIN5 Missense_Mutation p.P747L 0.23 tolerated(0.09) benign(0.008) TCGA-18-3409-01 5 154394592 154394592 G A KIF4B Silent p.K391K 0.19 TCGA-18-3409-01 5 155935705 155935705 C T SGCD Missense_Mutation p.S96F 0.11 deleterious(0) probably_damaging(0.986) TCGA-18-3409-01 5 155935706 155935706 C T SGCD Silent p.S96S 0.11 TCGA-18-3409-01 5 156186335 156186335 G A SGCD Silent p.G269G 0.16 TCGA-18-3409-01 5 157065364 157065364 G A SOX30 Missense_Mutation p.P585L 0.11 deleterious(0) probably_damaging(1) TCGA-18-3409-01 5 158140059 158140059 G A EBF1 Missense_Mutation p.H430Y 0.46 deleterious_low_confidence(0.05) probably_damaging(0.972) TCGA-18-3409-01 5 158223416 158223416 G A EBF1 Silent p.I282I 0.27 TCGA-18-3409-01 5 159344505 159344505 C T ADRA1B Missense_Mutation p.T198I 0.30 deleterious(0) probably_damaging(0.993) TCGA-18-3409-01 5 159776683 159776683 G A C1QTNF2 Missense_Mutation p.P162L 0.38 tolerated(0.83) unknown(0) TCGA-18-3409-01 5 160047825 160047825 C T ATP10B Missense_Mutation p.E649K 0.15 tolerated(0.82) benign(0.1) TCGA-18-3409-01 5 160114830 160114830 C T ATP10B Silent p.R84R 0.34 TCGA-18-3409-01 5 160972295 160972295 G A GABRB2 Missense_Mutation p.P59S 0.45 deleterious(0.02) possibly_damaging(0.58) TCGA-18-3409-01 5 161580393 161580393 G A GABRG2 3'UTR 0.43 TCGA-18-3409-01 5 16177920 16177920 C T MARCH11 Nonsense_Mutation p.W203* 0.26 TCGA-18-3409-01 5 167891727 167891727 C T WWC1 Silent p.P976P 0.34 TCGA-18-3409-01 5 169188553 169188553 C T DOCK2 Silent p.I826I 0.23 TCGA-18-3409-01 5 169535120 169535120 G A FOXI1 Silent p.R214R 0.55 TCGA-18-3409-01 5 169805862 169805862 C T KCNMB1 Missense_Mutation p.G141E 0.15 tolerated(1) benign(0.004) TCGA-18-3409-01 5 170162910 170162910 G A KCNIP1 3'Flank 0.58 TCGA-18-3409-01 5 170323062 170323062 G A RANBP17 Silent p.V144V 0.24 TCGA-18-3409-01 5 170692728 170692728 C T RANBP17 Silent p.I940I 0.33 TCGA-18-3409-01 5 171766402 171766402 G A SH3PXD2B Silent p.I569I 0.36 TCGA-18-3409-01 5 172571570 172571570 C T BNIP1 Missense_Mutation p.H8Y 0.25 tolerated(0.06) possibly_damaging(0.685) TCGA-18-3409-01 5 175306946 175306946 C T CPLX2 Silent p.I101I 0.33 TCGA-18-3409-01 5 175774459 175774459 C T KIAA1191 3'UTR 0.29 TCGA-18-3409-01 5 176016139 176016139 G A CDHR2 Silent p.S988S 0.14 TCGA-18-3409-01 5 176047818 176047818 C T SNCB Silent p.E133E 0.31 TCGA-18-3409-01 5 176048305 176048305 C T SNCB Splice_Site p.X95_splice 0.30 TCGA-18-3409-01 5 176316539 176316539 C T HK3 Missense_Mutation p.E253K 0.52 deleterious(0) probably_damaging(0.977) TCGA-18-3409-01 5 176638381 176638381 C T NSD1 Missense_Mutation p.S994F 0.22 deleterious_low_confidence(0.01) benign(0.068) TCGA-18-3409-01 5 176824994 176824994 G A SLC34A1 Missense_Mutation p.G543S 0.18 tolerated(0.12) benign(0.298) TCGA-18-3409-01 5 177575094 177575094 G A RMND5B 3'UTR 0.33 TCGA-18-3409-01 5 177575095 177575095 G A RMND5B 3'UTR 0.33 TCGA-18-3409-01 5 177666180 177666180 C T COL23A1 Missense_Mutation p.G528S 0.26 deleterious(0.02) possibly_damaging(0.865) TCGA-18-3409-01 5 178391721 178391721 G A ZNF454 Missense_Mutation p.D106N 0.13 tolerated(0.27) benign(0.001) TCGA-18-3409-01 5 178413751 178413751 C T GRM6 Missense_Mutation p.E502K 0.17 tolerated(0.09) benign(0.018) TCGA-18-3409-01 5 179269065 179269065 C A C5orf45 Splice_Site p.X98_splice 0.23 TCGA-18-3409-01 5 179302150 179302150 C T TBC1D9B Silent p.T646T 0.17 TCGA-18-3409-01 5 179765571 179765571 G A GFPT2 Missense_Mutation p.P13S 0.22 tolerated(0.1) benign(0.12) TCGA-18-3409-01 5 180047186 180047186 C T FLT4 Silent p.E843E 0.42 TCGA-18-3409-01 5 180166858 180166858 G A OR2Y1 Silent p.S67S 0.24 TCGA-18-3409-01 5 180377022 180377022 G A BTNL8 Silent p.R327R 0.25 TCGA-18-3409-01 5 180475255 180475255 G A BTNL9 Nonsense_Mutation p.W146* 0.24 TCGA-18-3409-01 5 180582831 180582831 G A OR2V2 Missense_Mutation p.E297K 0.20 deleterious(0.01) benign(0.41) TCGA-18-3409-01 5 19571770 19571770 C - CDH18 Frame_Shift_Del p.E391Kfs*26 0.12 TCGA-18-3409-01 5 23527114 23527114 G A PRDM9 Silent p.R639R 0.24 TCGA-18-3409-01 5 23527115 23527115 G A PRDM9 Missense_Mutation p.E640K 0.26 deleterious(0.04) probably_damaging(0.924) TCGA-18-3409-01 5 24487843 24487843 G A CDH10 Nonsense_Mutation p.R766* 0.35 TCGA-18-3409-01 5 24488000 24488000 G A CDH10 Silent p.F713F 0.20 TCGA-18-3409-01 5 24511541 24511541 C T CDH10 Silent p.G299G 0.32 TCGA-18-3409-01 5 26886136 26886136 G A CDH9 Silent p.F523F 0.23 TCGA-18-3409-01 5 26915832 26915832 C T CDH9 Silent p.S143S 0.22 TCGA-18-3409-01 5 26988258 26988258 G A CDH9 Silent p.F61F 0.29 TCGA-18-3409-01 5 31526644 31526644 G A DROSHA Silent p.V132V 0.44 TCGA-18-3409-01 5 32789682 32789682 C T AC026703.1 Missense_Mutation p.L59F 0.18 possibly_damaging(0.765) TCGA-18-3409-01 5 33576467 33576467 G A ADAMTS12 Missense_Mutation p.P1222S 0.34 tolerated(0.11) benign(0.007) TCGA-18-3409-01 5 33649739 33649739 G A ADAMTS12 Silent p.I418I 0.44 TCGA-18-3409-01 5 35025919 35025919 C T AGXT2 Silent p.K304K 0.23 TCGA-18-3409-01 5 35641538 35641538 C T SPEF2 Missense_Mutation p.S56L 0.36 deleterious(0) possibly_damaging(0.899) TCGA-18-3409-01 5 35704730 35704730 G A SPEF2 Missense_Mutation p.G825R 0.25 tolerated(0.5) benign(0.015) TCGA-18-3409-01 5 35705851 35705851 C T SPEF2 Missense_Mutation p.S869F 0.14 tolerated(0.72) benign(0.312) TCGA-18-3409-01 5 35806982 35806982 C T SPEF2 Silent p.F1728F 0.32 TCGA-18-3409-01 5 37125368 37125368 G A C5orf42 Missense_Mutation p.P2925L 0.22 deleterious(0) probably_damaging(1) TCGA-18-3409-01 5 38881757 38881757 C T OSMR Silent p.L103L 0.35 TCGA-18-3409-01 5 38933461 38933461 C T OSMR Missense_Mutation p.S952F 0.26 deleterious(0) benign(0.305) TCGA-18-3409-01 5 39202038 39202038 G A FYB Missense_Mutation p.P352L 0.20 deleterious(0.05) probably_damaging(0.999) TCGA-18-3409-01 5 39202362 39202362 T A FYB Missense_Mutation p.K244I 0.26 deleterious(0) probably_damaging(0.914) TCGA-18-3409-01 5 41004483 41004483 C T MROH2B Missense_Mutation p.E1387K 0.28 deleterious(0.04) benign(0.311) TCGA-18-3409-01 5 41009458 41009458 C T MROH2B Missense_Mutation p.G1115E 0.17 tolerated(0.82) benign(0.013) TCGA-18-3409-01 5 41032873 41032873 C T MROH2B Nonsense_Mutation p.W804* 0.39 TCGA-18-3409-01 5 41057416 41057416 A G MROH2B Missense_Mutation p.L268P 0.32 deleterious(0) possibly_damaging(0.785) TCGA-18-3409-01 5 41149419 41149419 C T C6 Silent p.R849R 0.32 TCGA-18-3409-01 5 43650627 43650627 C T NNT Missense_Mutation p.P552L 0.27 deleterious(0.02) probably_damaging(1) TCGA-18-3409-01 5 43704575 43704575 C T NNT 3'UTR 0.25 TCGA-18-3409-01 5 44310604 44310604 G A FGF10 Silent p.I118I 0.35 TCGA-18-3409-01 5 45267354 45267354 C T HCN1 Silent p.E540E 0.43 TCGA-18-3409-01 5 45353276 45353276 A G HCN1 Missense_Mutation p.Y435H 0.28 deleterious(0.01) benign(0.065) TCGA-18-3409-01 5 45645551 45645551 C T HCN1 Silent p.R195R 0.20 TCGA-18-3409-01 5 5242288 5242288 C T ADAMTS16 Silent p.S882S 0.23 TCGA-18-3409-01 5 53815435 53815435 G A SNX18 Nonsense_Mutation p.W551* 0.18 TCGA-18-3409-01 5 54415739 54415739 G A CDC20B Missense_Mutation p.S450F 0.19 deleterious(0) probably_damaging(0.99) TCGA-18-3409-01 5 54929713 54929713 G A SLC38A9 Silent p.F433F 0.45 TCGA-18-3409-01 5 57790524 57790524 G A GAPT Missense_Mutation p.R54K 0.36 tolerated(0.98) benign(0.001) TCGA-18-3409-01 5 58270781 58270781 G A PDE4D Nonsense_Mutation p.Q714* 0.40 TCGA-18-3409-01 5 60839623 60839623 C T ZSWIM6 Missense_Mutation p.P1043S 0.38 tolerated(0.08) probably_damaging(0.947) TCGA-18-3409-01 5 61783631 61783631 C T IPO11 Missense_Mutation p.H458Y 0.17 deleterious(0) possibly_damaging(0.897) TCGA-18-3409-01 5 63257364 63257364 G A HTR1A Silent p.I61I 0.48 TCGA-18-3409-01 5 63905037 63905037 G A RGS7BP Silent p.R244R 0.38 TCGA-18-3409-01 5 64082381 64082381 C T CWC27 Missense_Mutation p.P176S 0.48 deleterious(0.04) probably_damaging(0.999) TCGA-18-3409-01 5 64769451 64769451 G A ADAMTS6 Missense_Mutation p.A17V 0.26 tolerated(0.68) benign(0.001) TCGA-18-3409-01 5 64920826 64920826 C T CTC-534A2.2 5'UTR 0.24 TCGA-18-3409-01 5 66396421 66396421 G A MAST4 Splice_Site p.X357_splice 0.29 TCGA-18-3409-01 5 66462794 66462794 C T MAST4 Missense_Mutation p.S2596F 0.32 benign(0.308) TCGA-18-3409-01 5 68498782 68498782 A G CENPH Missense_Mutation p.R158G 0.16 deleterious(0) probably_damaging(0.975) TCGA-18-3409-01 5 70343872 70343872 G A GTF2H2 Missense_Mutation p.P240S 0.24 deleterious(0.04) benign(0.257) TCGA-18-3409-01 5 71494703 71494703 A T MAP1B Missense_Mutation p.M1841L 0.18 benign(0.003) TCGA-18-3409-01 5 71654257 71654257 C T PTCD2 3'UTR 0.62 TCGA-18-3409-01 5 73932188 73932188 C T ENC1 Silent p.Q41Q 0.19 TCGA-18-3409-01 5 74063150 74063150 C T GFM2 5'UTR 0.34 TCGA-18-3409-01 5 75964510 75964510 A G IQGAP2 Missense_Mutation p.N895S 0.36 deleterious(0.02) benign(0.041) TCGA-18-3409-01 5 76264654 76264654 G A CRHBP Missense_Mutation p.E305K 0.40 deleterious(0) probably_damaging(0.921) TCGA-18-3409-01 5 7804718 7804718 C T ADCY2 Silent p.F932F 0.45 TCGA-18-3409-01 5 79029528 79029528 G A CMYA5 Missense_Mutation p.R1647K 0.18 benign(0.05) TCGA-18-3409-01 5 79029588 79029588 C T CMYA5 Missense_Mutation p.S1667F 0.17 probably_damaging(0.979) TCGA-18-3409-01 5 79029791 79029791 G A CMYA5 Missense_Mutation p.G1735R 0.14 probably_damaging(0.998) TCGA-18-3409-01 5 79034258 79034258 C T CMYA5 Missense_Mutation p.P3224S 0.27 probably_damaging(0.967) TCGA-18-3409-01 5 79616862 79616862 A T SPZ1 Missense_Mutation p.K276N 0.35 tolerated(0.12) benign(0.028) TCGA-18-3409-01 5 79616863 79616863 G A SPZ1 Missense_Mutation p.D277N 0.35 tolerated(0.12) probably_damaging(0.967) TCGA-18-3409-01 5 80476040 80476040 G A RASGRF2 Silent p.R911R 0.41 TCGA-18-3409-01 5 82554529 82554529 A C XRCC4 Intron 0.24 TCGA-18-3409-01 5 82815510 82815510 G A VCAN Missense_Mutation p.S462N 0.20 tolerated(0.11) benign(0.063) TCGA-18-3409-01 5 82837997 82837997 C T VCAN Missense_Mutation p.P3059S 0.27 tolerated(1) benign(0.012) TCGA-18-3409-01 5 88018349 88018349 C T MEF2C 3'UTR 0.30 TCGA-18-3409-01 5 88018477 88018477 C T MEF2C Missense_Mutation p.E466K 0.19 deleterious(0.03) possibly_damaging(0.78) TCGA-18-3409-01 5 89971257 89971257 T C GPR98 Missense_Mutation p.Y1770H 0.29 probably_damaging(0.992) TCGA-18-3409-01 5 9190533 9190533 C A SEMA5A Silent p.L373L 0.29 TCGA-18-3409-01 5 94727108 94727108 C T FAM81B Silent p.F5F 0.36 TCGA-18-3409-01 5 96215571 96215571 G A ERAP2 Missense_Mutation p.R61Q 0.30 tolerated(0.5) benign(0.001) TCGA-18-3409-01 6 100368897 100368897 C T MCHR2 Silent p.Q314Q 0.34 TCGA-18-3409-01 6 10529189 10529189 C T GCNT2 Silent p.I15I 0.30 TCGA-18-3409-01 6 10529190 10529190 T A GCNT2 Missense_Mutation p.S16T 0.29 tolerated(0.68) benign(0.001) TCGA-18-3409-01 6 107595288 107595288 C T PDSS2 Missense_Mutation p.G192E 0.29 deleterious(0) probably_damaging(1) TCGA-18-3409-01 6 107955308 107955308 C T SOBP Silent p.S420S 0.24 TCGA-18-3409-01 6 107956400 107956400 G A SOBP Silent p.G784G 0.30 TCGA-18-3409-01 6 108041962 108041962 C T SCML4 Silent p.R306R 0.36 TCGA-18-3409-01 6 108041963 108041963 C T SCML4 Missense_Mutation p.R306K 0.35 tolerated(0.08) benign(0.01) TCGA-18-3409-01 6 109190081 109190081 C T ARMC2 Missense_Mutation p.P116S 0.27 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 6 109818714 109818714 G A AK9 Missense_Mutation p.R1757C 0.24 tolerated(0.05) benign(0.072) TCGA-18-3409-01 6 112382351 112382351 G A WISP3 Missense_Mutation p.R87K 0.28 tolerated(1) benign(0.034) TCGA-18-3409-01 6 112453986 112453986 G A LAMA4 Missense_Mutation p.P1268L 0.31 deleterious(0.01) probably_damaging(1) TCGA-18-3409-01 6 114378554 114378554 T C HS3ST5 Missense_Mutation p.K303R 0.27 tolerated(0.66) benign(0.041) TCGA-18-3409-01 6 117114012 117114012 G A GPRC6A Missense_Mutation p.P692S 0.25 tolerated(0.08) benign(0.314) TCGA-18-3409-01 6 117232185 117232185 G A RFX6 Missense_Mutation p.G254R 0.26 tolerated(0.15) benign(0.02) TCGA-18-3409-01 6 117232186 117232186 G A RFX6 Missense_Mutation p.G254E 0.26 tolerated(0.24) benign(0.027) TCGA-18-3409-01 6 117237248 117237248 G A RFX6 Silent p.E286E 0.33 TCGA-18-3409-01 6 117632191 117632191 G A ROS1 Silent p.F2075F 0.41 TCGA-18-3409-01 6 117663580 117663580 C T ROS1 Missense_Mutation p.G1551E 0.21 tolerated(0.08) probably_damaging(0.996) TCGA-18-3409-01 6 119338100 119338100 C T FAM184A Missense_Mutation p.E448K 0.18 deleterious(0.04) benign(0.272) TCGA-18-3409-01 6 121577360 121577360 C T TBC1D32 Missense_Mutation p.G602E 0.38 tolerated(0.18) possibly_damaging(0.657) TCGA-18-3409-01 6 12164203 12164203 C T HIVEP1 Missense_Mutation p.P2556S 0.31 deleterious(0.01) probably_damaging(1) TCGA-18-3409-01 6 12164204 12164204 C T HIVEP1 Missense_Mutation p.P2556L 0.31 deleterious(0) probably_damaging(1) TCGA-18-3409-01 6 125283976 125283976 C T RP11-510H23.1 RNA 0.23 TCGA-18-3409-01 6 127794487 127794487 G A SOGA3 Missense_Mutation p.S928L 0.24 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-18-3409-01 6 128134147 128134147 C T THEMIS Missense_Mutation p.E547K 0.33 tolerated(0.12) possibly_damaging(0.603) TCGA-18-3409-01 6 130152517 130152517 G A TMEM244 Missense_Mutation p.P112S 0.28 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 6 131481248 131481248 G A AKAP7 Nonsense_Mutation p.W67* 0.33 TCGA-18-3409-01 6 131904928 131904928 G A ARG1 Silent p.G291G 0.29 TCGA-18-3409-01 6 132271549 132271549 G A CTGF Missense_Mutation p.R142C 0.26 tolerated(0.2) probably_damaging(0.953) TCGA-18-3409-01 6 132891844 132891844 C T TAAR6 Silent p.I128I 0.33 TCGA-18-3409-01 6 132891934 132891934 C T TAAR6 Silent p.I158I 0.29 TCGA-18-3409-01 6 133050091 133050091 C T VNN3 Intron 0.28 TCGA-18-3409-01 6 133849888 133849888 C T EYA4 Missense_Mutation p.S622F 0.25 deleterious(0) probably_damaging(0.939) TCGA-18-3409-01 6 134498811 134498811 G A SGK1 Intron 0.29 TCGA-18-3409-01 6 136582572 136582572 C T BCLAF1 Missense_Mutation p.G863E 0.08 deleterious(0.01) probably_damaging(0.969) TCGA-18-3409-01 6 136599155 136599155 C T BCLAF1 Silent p.Q288Q 0.26 TCGA-18-3409-01 6 136599223 136599223 G A BCLAF1 Nonsense_Mutation p.Q266* 0.10 TCGA-18-3409-01 6 136710541 136710541 C T MAP7 Missense_Mutation p.R142K 0.33 deleterious(0.03) possibly_damaging(0.748) TCGA-18-3409-01 6 137245608 137245608 G A SLC35D3 Missense_Mutation p.G342E 0.50 tolerated_low_confidence(0.22) benign(0.037) TCGA-18-3409-01 6 137519347 137519347 G A IFNGR1 Missense_Mutation p.P431S 0.25 tolerated(0.41) benign(0.178) TCGA-18-3409-01 6 138199982 138199982 C A TNFAIP3 Missense_Mutation p.P467H 0.35 deleterious(0) benign(0.002) TCGA-18-3409-01 6 139094850 139094850 G A CCDC28A Silent p.Q13Q 0.30 TCGA-18-3409-01 6 139094873 139094873 G A CCDC28A Missense_Mutation p.G21E 0.27 tolerated_low_confidence(0.08) benign(0.008) TCGA-18-3409-01 6 144508350 144508350 G A STX11 Missense_Mutation p.D196N 0.46 deleterious(0.01) possibly_damaging(0.866) TCGA-18-3409-01 6 145157481 145157481 G A UTRN Missense_Mutation p.R3290Q 0.38 tolerated(0.48) benign(0.015) TCGA-18-3409-01 6 146125854 146125854 G A FBXO30 Missense_Mutation p.T563I 0.25 deleterious(0) possibly_damaging(0.764) TCGA-18-3409-01 6 147124287 147124287 C T ADGB Intron 0.27 TCGA-18-3409-01 6 149983369 149983369 G A LATS1 Silent p.I963I 0.44 TCGA-18-3409-01 6 151107560 151107560 G A PLEKHG1 Missense_Mutation p.D183N 0.38 tolerated(0.06) possibly_damaging(0.661) TCGA-18-3409-01 6 151669885 151669885 C T AKAP12 Missense_Mutation p.S120F 0.29 deleterious(0.01) probably_damaging(0.937) TCGA-18-3409-01 6 151669886 151669886 C T AKAP12 Silent p.S120S 0.31 TCGA-18-3409-01 6 151790238 151790238 C T C6orf211 Missense_Mutation p.P440L 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.747) TCGA-18-3409-01 6 151939346 151939346 C T CCDC170 3'UTR 0.43 TCGA-18-3409-01 6 152415611 152415611 C T ESR1 Silent p.I487I 0.39 TCGA-18-3409-01 6 152415612 152415612 C T ESR1 Missense_Mutation p.H488Y 0.38 tolerated(0.13) benign(0.161) TCGA-18-3409-01 6 152605216 152605216 G A SYNE1 Missense_Mutation p.A6035V 0.32 benign(0.021) TCGA-18-3409-01 6 152730358 152730358 C T SYNE1 Missense_Mutation p.E2129K 0.23 benign(0.419) TCGA-18-3409-01 6 152765648 152765648 G A SYNE1 Silent p.L1245L 0.32 TCGA-18-3409-01 6 153043010 153043010 G A MYCT1 Silent p.R110R 0.33 TCGA-18-3409-01 6 153365058 153365058 C A RGS17 Missense_Mutation p.W32C 0.32 tolerated(0.12) probably_damaging(0.982) TCGA-18-3409-01 6 154360940 154360940 A C OPRM1 Silent p.G180G 0.22 TCGA-18-3409-01 6 154412509 154412509 A G OPRM1 Missense_Mutation p.T449A 0.29 tolerated(0.49) benign(0.01) TCGA-18-3409-01 6 15496635 15496635 C T JARID2 Silent p.L393L 0.40 TCGA-18-3409-01 6 155571102 155571102 A C TIAM2 Missense_Mutation p.E1317A 0.36 deleterious(0) benign(0.142) TCGA-18-3409-01 6 155761200 155761200 C T NOX3 Silent p.L186L 0.22 TCGA-18-3409-01 6 157150511 157150511 C T ARID1B Missense_Mutation p.R565W 0.45 possibly_damaging(0.494) TCGA-18-3409-01 6 158924312 158924312 C T TULP4 Missense_Mutation p.P1206L 0.28 deleterious_low_confidence(0.02) benign(0.305) TCGA-18-3409-01 6 159146621 159146621 C A SYTL3 Silent p.L269L 0.22 TCGA-18-3409-01 6 159653084 159653084 T C FNDC1 Silent p.L514L 0.34 TCGA-18-3409-01 6 159654381 159654381 C T FNDC1 Missense_Mutation p.A946V 0.23 tolerated_low_confidence(0.11) unknown(0) TCGA-18-3409-01 6 159655137 159655137 C T FNDC1 Missense_Mutation p.S1198F 0.47 deleterious_low_confidence(0) unknown(0) TCGA-18-3409-01 6 160494846 160494846 C T IGF2R Missense_Mutation p.R1669C 0.21 tolerated(0.1) probably_damaging(0.94) TCGA-18-3409-01 6 160875377 160875377 C T SLC22A3 3'Flank 0.33 TCGA-18-3409-01 6 160952868 160952868 C T LPA Missense_Mutation p.G2006R 0.35 deleterious(0) benign(0.389) TCGA-18-3409-01 6 161032642 161032642 G A LPA Missense_Mutation p.S852F 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-18-3409-01 6 1611181 1611181 C T FOXC1 Silent p.F167F 0.20 TCGA-18-3409-01 6 161470960 161470960 T C MAP3K4 Silent p.G552G 0.26 TCGA-18-3409-01 6 161990405 161990405 C T PARK2 Silent p.R305R 0.24 TCGA-18-3409-01 6 162683632 162683632 G A PARK2 Missense_Mutation p.P113S 0.24 deleterious(0) probably_damaging(0.987) TCGA-18-3409-01 6 165715741 165715741 G A C6orf118 Silent p.L24L 0.22 TCGA-18-3409-01 6 165723081 165723081 C T C6orf118 5'UTR 0.21 TCGA-18-3409-01 6 165801805 165801805 C T PDE10A Silent p.Q598Q 0.19 TCGA-18-3409-01 6 165842145 165842145 C A PDE10A Splice_Site p.X285_splice 0.42 TCGA-18-3409-01 6 165862430 165862430 C T PDE10A Missense_Mutation p.G128R 0.19 deleterious(0.01) probably_damaging(0.977) TCGA-18-3409-01 6 166580159 166580159 T C T Missense_Mutation p.N131S 0.41 deleterious(0) benign(0.388) TCGA-18-3409-01 6 167550254 167550254 C T CCR6 Missense_Mutation p.S179F 0.29 deleterious(0) probably_damaging(0.996) TCGA-18-3409-01 6 167754328 167754328 G A TTLL2 Missense_Mutation p.E314K 0.27 deleterious(0.01) probably_damaging(0.947) TCGA-18-3409-01 6 168352699 168352699 C T MLLT4 Silent p.D1548D 0.37 TCGA-18-3409-01 6 168443317 168443317 C T KIF25 Silent p.V302V 0.32 TCGA-18-3409-01 6 168464355 168464355 C T FRMD1 Missense_Mutation p.E244K 0.36 deleterious(0.02) benign(0.33) TCGA-18-3409-01 6 168464356 168464356 C T FRMD1 Silent p.K243K 0.36 TCGA-18-3409-01 6 169648703 169648703 C T THBS2 Missense_Mutation p.E140K 0.30 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 6 169648981 169648981 C T THBS2 Missense_Mutation p.G47E 0.33 deleterious(0) probably_damaging(1) TCGA-18-3409-01 6 170179304 170179304 G A ERMARD Missense_Mutation p.S589N 0.53 tolerated(0.2) benign(0.055) TCGA-18-3409-01 6 170592612 170592612 C T DLL1 Silent p.G585G 0.39 TCGA-18-3409-01 6 17543180 17543180 C T CAP2 Missense_Mutation p.S372F 0.35 deleterious(0) probably_damaging(1) TCGA-18-3409-01 6 17809080 17809080 G A KIF13A Silent p.F694F 0.41 TCGA-18-3409-01 6 24278332 24278332 C T DCDC2 Silent p.T289T 0.35 TCGA-18-3409-01 6 24505195 24505195 C T ALDH5A1 Silent p.S236S 0.34 TCGA-18-3409-01 6 24714623 24714623 G A C6orf62 Missense_Mutation p.R118W 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-18-3409-01 6 25850059 25850059 A T SLC17A3 Nonsense_Mutation p.Y415* 0.43 TCGA-18-3409-01 6 26027148 26027148 G A HIST1H4B 3'UTR 0.33 TCGA-18-3409-01 6 26406243 26406243 G A BTN3A1 Silent p.E64E 0.46 TCGA-18-3409-01 6 26444264 26444264 C T BTN3A3 Silent p.F55F 0.30 TCGA-18-3409-01 6 28213072 28213072 T G ZKSCAN4 Missense_Mutation p.Y487S 0.38 deleterious(0) possibly_damaging(0.851) TCGA-18-3409-01 6 28403958 28403958 G A ZSCAN23 Missense_Mutation p.S29F 0.29 tolerated(0.71) benign(0.034) TCGA-18-3409-01 6 28541122 28541122 G A SCAND3 Silent p.I848I 0.29 TCGA-18-3409-01 6 28541310 28541310 C T SCAND3 Missense_Mutation p.E786K 0.24 tolerated(0.06) probably_damaging(0.971) TCGA-18-3409-01 6 28543804 28543804 G A SCAND3 Silent p.F226F 0.29 TCGA-18-3409-01 6 29231725 29231725 G A XXbac-BPG308J9.3 RNA 0.20 TCGA-18-3409-01 6 29323094 29323094 C T OR5V1 Silent p.R293R 0.31 TCGA-18-3409-01 6 29407862 29407862 G A OR10C1 Missense_Mutation p.G24S 0.31 tolerated(0.42) benign(0.001) TCGA-18-3409-01 6 29407863 29407863 G A OR10C1 Missense_Mutation p.G24D 0.31 tolerated(0.22) benign(0.015) TCGA-18-3409-01 6 29429658 29429658 G A OR2H1 Missense_Mutation p.V38M 0.33 tolerated(0.15) benign(0.073) TCGA-18-3409-01 6 2948542 2948542 G A SERPINB6 Missense_Mutation p.S374F 0.38 deleterious(0.01) benign(0.25) TCGA-18-3409-01 6 30577617 30577617 G A PPP1R10 Silent p.F35F 0.31 TCGA-18-3409-01 6 30672562 30672562 G C MDC1 Silent p.T1466T 0.31 TCGA-18-3409-01 6 30891143 30891143 C T VARS2 Missense_Mutation p.S806F 0.30 deleterious(0.02) benign(0.014) TCGA-18-3409-01 6 31475280 31475280 G A MICB Silent p.K332K 0.33 TCGA-18-3409-01 6 31557073 31557073 G A NCR3 Intron 0.27 TCGA-18-3409-01 6 31603799 31603799 C T PRRC2A Missense_Mutation p.P1866L 0.36 unknown(0) TCGA-18-3409-01 6 31631763 31631763 G A GPANK1 Missense_Mutation p.R165C 0.45 tolerated(0.14) probably_damaging(0.999) TCGA-18-3409-01 6 31631764 31631764 G A GPANK1 Silent p.G164G 0.44 TCGA-18-3409-01 6 31675746 31675746 G A LY6G6F Missense_Mutation p.E161K 0.27 tolerated(0.08) possibly_damaging(0.636) TCGA-18-3409-01 6 31753355 31753355 C T VARS Nonsense_Mutation p.W419* 0.24 TCGA-18-3409-01 6 31760835 31760835 G A VARS Silent p.T150T 0.33 TCGA-18-3409-01 6 31760836 31760836 G A VARS Missense_Mutation p.T150I 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-18-3409-01 6 31779345 31779345 G A HSPA1L Silent p.A135A 0.48 TCGA-18-3409-01 6 32026084 32026084 C T TNXB Missense_Mutation p.G2526R 0.35 probably_damaging(0.999) TCGA-18-3409-01 6 32029219 32029219 G A TNXB Missense_Mutation p.H2483Y 0.34 probably_damaging(0.922) TCGA-18-3409-01 6 32030096 32030096 G T TNXB Missense_Mutation p.Q2336K 0.30 probably_damaging(0.915) TCGA-18-3409-01 6 32038048 32038048 C T TNXB Missense_Mutation p.D1712N 0.56 probably_damaging(0.996) TCGA-18-3409-01 6 32063503 32063503 G A TNXB Silent p.F709F 0.38 TCGA-18-3409-01 6 32138852 32138852 G A AGPAT1 Intron 0.45 TCGA-18-3409-01 6 32372866 32372866 C T BTNL2 Missense_Mutation p.G93S 0.29 deleterious(0.05) probably_damaging(0.973) TCGA-18-3409-01 6 33137858 33137858 C T COL11A2 Missense_Mutation p.G1115E 0.34 unknown(0) TCGA-18-3409-01 6 33232566 33232566 G A VPS52 Silent p.L465L 0.30 TCGA-18-3409-01 6 33290743 33290743 G A DAXX 5'UTR 0.28 TCGA-18-3409-01 6 33423652 33423652 C T ZBTB9 Missense_Mutation p.P259S 0.32 tolerated(0.3) benign(0.004) TCGA-18-3409-01 6 34499404 34499404 C T PACSIN1 Silent p.P355P 0.43 TCGA-18-3409-01 6 35762834 35762834 C T CLPS 3'UTR 0.15 TCGA-18-3409-01 6 36259145 36259145 C T PNPLA1 Missense_Mutation p.S85F 0.24 tolerated(0.69) benign(0.004) TCGA-18-3409-01 6 36483159 36483159 T A STK38 Missense_Mutation p.I209F 0.27 deleterious(0) benign(0.424) TCGA-18-3409-01 6 37138791 37138791 C T PIM1 Missense_Mutation p.S75F 0.33 tolerated(0.42) possibly_damaging(0.73) TCGA-18-3409-01 6 37140804 37140804 C T PIM1 Missense_Mutation p.R214C 0.40 tolerated(0.13) possibly_damaging(0.893) TCGA-18-3409-01 6 38690922 38690922 C T DNAH8 5'UTR 0.41 TCGA-18-3409-01 6 38790619 38790619 T A DNAH8 Missense_Mutation p.F960I 0.46 benign(0.001) TCGA-18-3409-01 6 38790796 38790796 G A DNAH8 Missense_Mutation p.D1019N 0.20 benign(0.001) TCGA-18-3409-01 6 38825328 38825328 A G DNAH8 Missense_Mutation p.H1706R 0.30 benign(0) TCGA-18-3409-01 6 39282924 39282924 C T KCNK16 Nonsense_Mutation p.W315* 0.34 TCGA-18-3409-01 6 39284636 39284636 C T KCNK16 Missense_Mutation p.E195K 0.31 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 6 39874066 39874066 C T MOCS1 3'UTR 0.36 TCGA-18-3409-01 6 40399601 40399601 G A LRFN2 Missense_Mutation p.P418S 0.30 tolerated(0.74) benign(0.004) TCGA-18-3409-01 6 42185598 42185598 C T MRPS10 5'UTR 0.50 TCGA-18-3409-01 6 42603165 42603165 C T UBR2 Missense_Mutation p.P519S 0.38 tolerated(0.54) benign(0.014) TCGA-18-3409-01 6 43027990 43027990 C T KLC4 Intron 0.38 TCGA-18-3409-01 6 43027991 43027991 C T KLC4 Intron 0.38 TCGA-18-3409-01 6 43099815 43099815 C T PTK7 Missense_Mutation p.R300W 0.31 deleterious(0) probably_damaging(0.948) TCGA-18-3409-01 6 43250759 43250759 G A TTBK1 Missense_Mutation p.E761K 0.30 benign(0.108) TCGA-18-3409-01 6 43316338 43316338 C T ZNF318 Silent p.R932R 0.39 TCGA-18-3409-01 6 43316339 43316339 C T ZNF318 Missense_Mutation p.R932K 0.40 probably_damaging(0.96) TCGA-18-3409-01 6 43592737 43592737 G A GTPBP2 Silent p.I256I 0.32 TCGA-18-3409-01 6 44150729 44150729 G A CAPN11 Missense_Mutation p.E664K 0.26 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 6 44272836 44272836 C T AARS2 Missense_Mutation p.D512N 0.37 deleterious(0.01) probably_damaging(0.994) TCGA-18-3409-01 6 45515016 45515016 G A RUNX2 Missense_Mutation p.D514N 0.37 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 6 46107761 46107761 C T ENPP4 Silent p.I147I 0.27 TCGA-18-3409-01 6 46107950 46107950 A G ENPP4 Missense_Mutation p.I210M 0.29 tolerated(0.05) benign(0.027) TCGA-18-3409-01 6 46111176 46111176 G A ENPP4 Silent p.G387G 0.35 TCGA-18-3409-01 6 46826469 46826469 G A GPR116 Silent p.I1057I 0.38 TCGA-18-3409-01 6 46826629 46826629 G A GPR116 Missense_Mutation p.P1004L 0.20 deleterious(0.02) possibly_damaging(0.564) TCGA-18-3409-01 6 46826655 46826655 G A GPR116 Silent p.I995I 0.25 TCGA-18-3409-01 6 47253992 47253992 G A TNFRSF21 Missense_Mutation p.P146S 0.32 tolerated(0.05) benign(0.102) TCGA-18-3409-01 6 47847666 47847666 C T PTCHD4 Missense_Mutation p.G305E 0.35 deleterious(0) probably_damaging(0.958) TCGA-18-3409-01 6 49586917 49586917 G T RHAG Missense_Mutation p.Q106K 0.37 tolerated(0.11) benign(0.004) TCGA-18-3409-01 6 51524180 51524180 C T PKHD1 Missense_Mutation p.E3582K 0.37 tolerated(0.17) benign(0.124) TCGA-18-3409-01 6 52101843 52101843 C T IL17F Silent p.E126E 0.30 TCGA-18-3409-01 6 52370924 52370924 G A TRAM2 Silent p.L213L 0.39 TCGA-18-3409-01 6 52615265 52615265 G A GSTA2 3'UTR 0.20 TCGA-18-3409-01 6 55214924 55214924 A C GFRAL Silent p.L117L 0.24 TCGA-18-3409-01 6 55223928 55223928 C T GFRAL Missense_Mutation p.S315L 0.43 deleterious(0) probably_damaging(0.997) TCGA-18-3409-01 6 55406863 55406863 C T HMGCLL1 Missense_Mutation p.E92K 0.26 deleterious(0.01) probably_damaging(1) TCGA-18-3409-01 6 56368827 56368827 C T DST Missense_Mutation p.E3889K 0.31 probably_damaging(0.986) TCGA-18-3409-01 6 56917868 56917868 C T KIAA1586 Missense_Mutation p.P191S 0.26 tolerated(0.18) benign(0.366) TCGA-18-3409-01 6 56917869 56917869 C T KIAA1586 Missense_Mutation p.P191L 0.25 tolerated(0.09) possibly_damaging(0.447) TCGA-18-3409-01 6 57512508 57512508 C T PRIM2 3'UTR 0.15 TCGA-18-3409-01 6 57512648 57512648 C T PRIM2 3'UTR 0.11 TCGA-18-3409-01 6 62442587 62442587 C T KHDRBS2 Missense_Mutation p.S298N 0.36 tolerated(0.13) benign(0.398) TCGA-18-3409-01 6 62611264 62611264 C T KHDRBS2 Missense_Mutation p.E166K 0.21 deleterious(0.01) probably_damaging(0.957) TCGA-18-3409-01 6 63990524 63990524 G A LGSN Missense_Mutation p.S311L 0.34 deleterious(0.04) benign(0.118) TCGA-18-3409-01 6 64394342 64394342 G A PHF3 Missense_Mutation p.C240Y 0.32 deleterious_low_confidence(0) benign(0.332) TCGA-18-3409-01 6 70637811 70637811 C T COL19A1 Missense_Mutation p.P93S 0.27 deleterious(0.01) unknown(0) TCGA-18-3409-01 6 70639419 70639419 C T COL19A1 Missense_Mutation p.P165S 0.29 tolerated(0.22) unknown(0) TCGA-18-3409-01 6 70639420 70639420 C T COL19A1 Missense_Mutation p.P165L 0.29 deleterious(0.05) unknown(0) TCGA-18-3409-01 6 70935639 70935639 G A COL9A1 Silent p.L859L 0.29 TCGA-18-3409-01 6 71567878 71567878 C T SMAP1 Silent p.P405P 0.34 TCGA-18-3409-01 6 7231821 7231821 C T RREB1 Silent p.P1163P 0.38 TCGA-18-3409-01 6 7231916 7231916 C T RREB1 Missense_Mutation p.P1195L 0.23 deleterious(0) probably_damaging(0.929) TCGA-18-3409-01 6 72957740 72957740 G A RIMS1 Silent p.Q717Q 0.33 TCGA-18-3409-01 6 72968786 72968786 G A RIMS1 Missense_Mutation p.D1009N 0.46 deleterious(0) possibly_damaging(0.574) TCGA-18-3409-01 6 73108740 73108740 C T RIMS1 Missense_Mutation p.P1602S 0.34 deleterious(0) probably_damaging(1) TCGA-18-3409-01 6 73713679 73713679 C T KCNQ5 Silent p.I149I 0.34 TCGA-18-3409-01 6 73787531 73787531 C T KCNQ5 Missense_Mutation p.S280L 0.43 deleterious(0) possibly_damaging(0.59) TCGA-18-3409-01 6 73935101 73935101 C T KHDC1L Missense_Mutation p.E11K 0.58 tolerated(1) benign(0.001) TCGA-18-3409-01 6 74477809 74477809 G A CD109 Missense_Mutation p.G510E 0.28 deleterious(0) probably_damaging(0.986) TCGA-18-3409-01 6 76023417 76023417 G A FILIP1 Missense_Mutation p.R711W 0.30 deleterious(0) probably_damaging(0.937) TCGA-18-3409-01 6 76023520 76023520 G A FILIP1 Silent p.F676F 0.27 TCGA-18-3409-01 6 76589588 76589588 C T MYO6 Missense_Mutation p.S710L 0.35 deleterious(0.04) unknown(0) TCGA-18-3409-01 6 80201433 80201433 C T LCA5 Missense_Mutation p.D324N 0.23 tolerated(0.17) possibly_damaging(0.601) TCGA-18-3409-01 6 8102763 8102763 C T EEF1E1 5'UTR 0.21 TCGA-18-3409-01 6 83921765 83921765 G A ME1 Missense_Mutation p.P533S 0.31 deleterious(0) probably_damaging(1) TCGA-18-3409-01 6 86227558 86227558 G A SNX14 Silent p.F728F 0.25 TCGA-18-3409-01 6 86256914 86256914 C T SNX14 Missense_Mutation p.E342K 0.27 tolerated(0.4) benign(0.008) TCGA-18-3409-01 6 88773909 88773909 T G SPACA1 Missense_Mutation p.F235V 0.38 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 6 90420499 90420499 G A MDN1 Missense_Mutation p.H2556Y 0.52 benign(0.002) TCGA-18-3409-01 6 90450000 90450000 G A MDN1 Missense_Mutation p.R1516C 0.22 possibly_damaging(0.625) TCGA-18-3409-01 6 90499892 90499892 G A MDN1 Nonsense_Mutation p.Q362* 0.36 TCGA-18-3409-01 6 90605530 90605530 G A GJA10 Missense_Mutation p.G448E 0.25 tolerated(0.19) benign(0.024) TCGA-18-3409-01 6 93956676 93956676 G A EPHA7 Missense_Mutation p.R854C 0.30 deleterious(0) probably_damaging(0.997) TCGA-18-3409-01 6 94120501 94120501 G A EPHA7 Missense_Mutation p.L184F 0.20 deleterious(0) probably_damaging(1) TCGA-18-3409-01 6 94120690 94120690 C T EPHA7 Missense_Mutation p.E121K 0.42 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 6 96053795 96053795 C T MANEA Silent p.A301A 0.26 TCGA-18-3409-01 6 96053988 96053988 C T MANEA Missense_Mutation p.R366C 0.32 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 6 97512602 97512602 G A KLHL32 Silent p.Q137Q 0.31 TCGA-18-3409-01 7 100028584 100028584 C T MEPCE Missense_Mutation p.P315S 0.26 tolerated(0.2) possibly_damaging(0.904) TCGA-18-3409-01 7 100028585 100028585 C T MEPCE Missense_Mutation p.P315L 0.25 deleterious(0.04) probably_damaging(0.991) TCGA-18-3409-01 7 100350724 100350724 C T ZAN Missense_Mutation p.A999V 0.44 unknown(0) TCGA-18-3409-01 7 100377269 100377269 C T ZAN Silent p.F2172F 0.33 TCGA-18-3409-01 7 100405041 100405041 G A EPHB4 Silent p.G760G 0.27 TCGA-18-3409-01 7 100549600 100549600 C T MUC3A Missense_Mutation p.P61S 0.23 tolerated(0.19) unknown(0) TCGA-18-3409-01 7 100678116 100678116 C T MUC17 Missense_Mutation p.S1140L 0.28 unknown(0) TCGA-18-3409-01 7 100681856 100681856 A G MUC17 Missense_Mutation p.M2387V 0.27 unknown(0) TCGA-18-3409-01 7 101840495 101840495 C T CUX1 Missense_Mutation p.R613C 0.31 deleterious(0) unknown(0) TCGA-18-3409-01 7 102087217 102087217 C T ORAI2 Silent p.F161F 0.35 TCGA-18-3409-01 7 102106347 102106347 C T LRWD1 Missense_Mutation p.S55F 0.17 deleterious(0) probably_damaging(0.977) TCGA-18-3409-01 7 103008052 103008052 C T PSMC2 Missense_Mutation p.P346L 0.19 deleterious(0) probably_damaging(1) TCGA-18-3409-01 7 103123325 103123325 G A RELN Silent p.V3425V 0.23 TCGA-18-3409-01 7 103230142 103230142 C T RELN Missense_Mutation p.G1349E 0.33 deleterious(0) probably_damaging(0.972) TCGA-18-3409-01 7 103252186 103252186 C T RELN Missense_Mutation p.G923R 0.34 deleterious(0.01) possibly_damaging(0.703) TCGA-18-3409-01 7 103322649 103322649 G A RELN Silent p.F401F 0.29 TCGA-18-3409-01 7 103338452 103338452 C T RELN Missense_Mutation p.E331K 0.35 tolerated(0.12) benign(0.022) TCGA-18-3409-01 7 105673198 105673198 C T CDHR3 3'UTR 0.29 TCGA-18-3409-01 7 105752697 105752697 G A SYPL1 Intron 0.30 TCGA-18-3409-01 7 106836297 106836297 G A HBP1 Missense_Mutation p.M362I 0.32 deleterious(0.02) benign(0.012) TCGA-18-3409-01 7 107329538 107329538 G A SLC26A4 Missense_Mutation p.E348K 0.36 tolerated(0.42) benign(0.008) TCGA-18-3409-01 7 107834765 107834765 G C NRCAM Missense_Mutation p.T524R 0.40 deleterious(0) probably_damaging(0.982) TCGA-18-3409-01 7 110764288 110764288 C T LRRN3 Missense_Mutation p.T487I 0.14 deleterious(0.02) benign(0.262) TCGA-18-3409-01 7 110764817 110764817 G A LRRN3 Silent p.R663R 0.36 TCGA-18-3409-01 7 111555875 111555875 G A DOCK4 Missense_Mutation p.S384F 0.29 deleterious(0) benign(0.04) TCGA-18-3409-01 7 113518376 113518376 G A PPP1R3A Missense_Mutation p.S924L 0.23 deleterious(0) benign(0.015) TCGA-18-3409-01 7 113558613 113558613 G A PPP1R3A Nonsense_Mutation p.R147* 0.29 TCGA-18-3409-01 7 114269646 114269646 G A FOXP2 Intron 0.20 TCGA-18-3409-01 7 11521444 11521444 C T THSD7A Missense_Mutation p.R663Q 0.27 deleterious(0) probably_damaging(1) TCGA-18-3409-01 7 11630129 11630129 C T THSD7A Missense_Mutation p.E471K 0.29 tolerated(0.24) benign(0.047) TCGA-18-3409-01 7 117170987 117170987 G A CFTR Missense_Mutation p.G103E 0.34 deleterious(0.01) probably_damaging(0.928) TCGA-18-3409-01 7 117431685 117431685 G T CTTNBP2 Missense_Mutation p.P522H 0.31 deleterious(0) possibly_damaging(0.779) TCGA-18-3409-01 7 121758651 121758651 C T AASS Missense_Mutation p.R169K 0.25 deleterious(0.01) possibly_damaging(0.694) TCGA-18-3409-01 7 122130223 122130223 G T CADPS2 Silent p.A588A 0.31 TCGA-18-3409-01 7 12410053 12410053 A T VWDE Missense_Mutation p.L627M 0.30 tolerated(0.12) benign(0.264) TCGA-18-3409-01 7 126173069 126173069 G A GRM8 Silent p.T789T 0.29 TCGA-18-3409-01 7 126173393 126173393 C T GRM8 Silent p.K681K 0.37 TCGA-18-3409-01 7 127230149 127230149 C T ARF5 Silent p.D96D 0.34 TCGA-18-3409-01 7 127235514 127235514 C T FSCN3 Missense_Mutation p.H100Y 0.32 tolerated(0.06) benign(0.211) TCGA-18-3409-01 7 127235654 127235654 G A FSCN3 Silent p.V146V 0.34 TCGA-18-3409-01 7 128369984 128369984 C T FAM71F1 Silent p.I294I 0.33 TCGA-18-3409-01 7 128478391 128478391 G A FLNC Missense_Mutation p.G373E 0.22 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 7 128484142 128484142 C T FLNC Missense_Mutation p.S1005L 0.44 deleterious(0.01) possibly_damaging(0.841) TCGA-18-3409-01 7 128490444 128490444 G A FLNC Missense_Mutation p.E1769K 0.35 tolerated(0.14) benign(0.086) TCGA-18-3409-01 7 128497374 128497374 C T FLNC Silent p.F2588F 0.24 TCGA-18-3409-01 7 128802733 128802733 C T TSPAN33 Silent p.F116F 0.42 TCGA-18-3409-01 7 129096369 129096369 C T STRIP2 Silent p.I308I 0.39 TCGA-18-3409-01 7 129813502 129813502 G T TMEM209 Silent p.I509I 0.26 TCGA-18-3409-01 7 130021505 130021505 C T CPA1 Missense_Mutation p.S61F 0.27 tolerated(0.71) benign(0.008) TCGA-18-3409-01 7 132193132 132193132 G A PLXNA4 Silent p.P107P 0.28 TCGA-18-3409-01 7 134260593 134260593 C T AKR1B15 Silent p.L219L 0.15 TCGA-18-3409-01 7 136587929 136587929 T C CHRM2 Intron 0.31 TCGA-18-3409-01 7 137075955 137075955 G A DGKI 3'UTR 0.37 TCGA-18-3409-01 7 137148311 137148311 C T DGKI Missense_Mutation p.D895N 0.34 tolerated(0.19) benign(0.388) TCGA-18-3409-01 7 137773434 137773434 G A AKR1D1 Missense_Mutation p.E61K 0.23 deleterious(0) probably_damaging(1) TCGA-18-3409-01 7 138552764 138552764 C T KIAA1549 Missense_Mutation p.R1629K 0.23 tolerated(1) benign(0.003) TCGA-18-3409-01 7 138554436 138554436 G A KIAA1549 Silent p.R1541R 0.39 TCGA-18-3409-01 7 138946238 138946238 C T UBN2 Silent p.P382P 0.32 TCGA-18-3409-01 7 13935419 13935419 G A ETV1 3'UTR 0.31 TCGA-18-3409-01 7 139529171 139529171 C T TBXAS1 5'UTR 0.26 TCGA-18-3409-01 7 141427045 141427045 G A WEE2 Intron 0.33 TCGA-18-3409-01 7 141478589 141478589 T C TAS2R4 Silent p.L101L 0.36 TCGA-18-3409-01 7 141738356 141738356 G A MGAM Missense_Mutation p.D753N 0.14 tolerated(0.4) benign(0.025) TCGA-18-3409-01 7 141756627 141756627 C T MGAM Intron 0.30 TCGA-18-3409-01 7 141840843 141840843 C T RP11-1220K2.2 Missense_Mutation p.S414F 0.42 deleterious(0.01) benign(0.346) TCGA-18-3409-01 7 141952383 141952383 T C PRSS58 Missense_Mutation p.K162R 0.35 tolerated(0.35) benign(0.015) TCGA-18-3409-01 7 141957639 141957639 G A PRSS58 5'UTR 0.29 TCGA-18-3409-01 7 142197631 142197631 G A TRBV11-2 RNA 0.09 TCGA-18-3409-01 7 142223881 142223881 G A TRBV11-1 Missense_Mutation p.L96F 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-18-3409-01 7 142378608 142378608 C T MTRNR2L6 3'Flank 0.57 TCGA-18-3409-01 7 142500194 142500194 G A TRBC2 Missense_Mutation p.R174K 0.59 tolerated(0.6) benign(0.008) TCGA-18-3409-01 7 142638489 142638489 C T KEL Silent p.R683R 0.23 TCGA-18-3409-01 7 142723949 142723949 G A OR9A2 Nonsense_Mutation p.Q91* 0.34 TCGA-18-3409-01 7 142983529 142983529 C T TMEM139 Silent p.A86A 0.32 TCGA-18-3409-01 7 143043326 143043326 G A CLCN1 Missense_Mutation p.E756K 0.32 tolerated(0.24) benign(0.313) TCGA-18-3409-01 7 143048731 143048731 C T CLCN1 Silent p.L880L 0.43 TCGA-18-3409-01 7 143054093 143054093 C T FAM131B Missense_Mutation p.M211I 0.33 tolerated(0.44) benign(0.029) TCGA-18-3409-01 7 143140607 143140607 T C TAS2R60 Missense_Mutation p.V21A 0.24 tolerated(0.3) benign(0.001) TCGA-18-3409-01 7 143141125 143141125 C T TAS2R60 Missense_Mutation p.L194F 0.27 tolerated(1) benign(0.003) TCGA-18-3409-01 7 143573429 143573429 G A FAM115A Silent p.P91P 0.28 TCGA-18-3409-01 7 143657094 143657094 G A OR2F1 Missense_Mutation p.E11K 0.20 deleterious(0.02) possibly_damaging(0.484) TCGA-18-3409-01 7 143657642 143657642 C T OR2F1 Silent p.S193S 0.33 TCGA-18-3409-01 7 143771942 143771942 C T OR2A25 Silent p.F210F 0.29 TCGA-18-3409-01 7 143807315 143807315 C T OR2A2 Silent p.L214L 0.34 TCGA-18-3409-01 7 143826661 143826661 C T OR2A14 Silent p.F152F 0.30 TCGA-18-3409-01 7 143956673 143956673 G A OR2A7 Missense_Mutation p.P17S 0.10 tolerated(1) benign(0.082) TCGA-18-3409-01 7 144101747 144101747 G A NOBOX Missense_Mutation p.P38S 0.34 tolerated_low_confidence(0.4) benign(0) TCGA-18-3409-01 7 144245695 144245695 C T TPK1 Missense_Mutation p.G168R 0.34 deleterious(0) possibly_damaging(0.886) TCGA-18-3409-01 7 146536856 146536856 G A CNTNAP2 Missense_Mutation p.D88N 0.41 deleterious(0.03) probably_damaging(0.954) TCGA-18-3409-01 7 146741005 146741005 C T CNTNAP2 Missense_Mutation p.P137S 0.25 tolerated(0.76) benign(0.028) TCGA-18-3409-01 7 147092776 147092776 A C CNTNAP2 Missense_Mutation p.Q525P 0.26 tolerated(0.2) benign(0.106) TCGA-18-3409-01 7 14775702 14775702 G A DGKB Missense_Mutation p.P96S 0.22 tolerated(0.17) benign(0.222) TCGA-18-3409-01 7 148287999 148287999 G A C7orf33 5'UTR 0.26 TCGA-18-3409-01 7 148511204 148511204 G A EZH2 Silent p.R566R 0.24 TCGA-18-3409-01 7 148876626 148876626 A T ZNF398 Silent p.L554L 0.28 TCGA-18-3409-01 7 149318402 149318402 C T ZNF767 RNA 0.30 TCGA-18-3409-01 7 149489695 149489695 C T SSPO RNA 0.25 TCGA-18-3409-01 7 149500625 149500625 C T SSPO RNA 0.22 TCGA-18-3409-01 7 149508026 149508026 G A SSPO RNA 0.25 TCGA-18-3409-01 7 149512315 149512315 C T SSPO RNA 0.56 TCGA-18-3409-01 7 149558300 149558300 C T ZNF862 Missense_Mutation p.P684L 0.37 tolerated(0.14) probably_damaging(0.991) TCGA-18-3409-01 7 150324739 150324739 G A GIMAP6 3'UTR 0.38 TCGA-18-3409-01 7 150417417 150417417 G A GIMAP1 Missense_Mutation p.A109T 0.15 deleterious(0) probably_damaging(0.964) TCGA-18-3409-01 7 150771338 150771338 C T SLC4A2 Silent p.F916F 0.45 TCGA-18-3409-01 7 151093117 151093117 C T WDR86 Silent p.A157A 0.23 TCGA-18-3409-01 7 1513866 1513866 A T INTS1 Missense_Mutation p.F1923I 0.35 deleterious(0) possibly_damaging(0.864) TCGA-18-3409-01 7 151860306 151860306 G A KMT2C Silent p.P3452P 0.21 TCGA-18-3409-01 7 151860307 151860307 G A KMT2C Missense_Mutation p.P3452L 0.21 possibly_damaging(0.883) TCGA-18-3409-01 7 154876017 154876017 G A HTR5A Nonsense_Mutation p.W298* 0.33 TCGA-18-3409-01 7 155534782 155534782 G C RBM33 Missense_Mutation p.E773D 0.31 tolerated(0.22) unknown(0) TCGA-18-3409-01 7 155604732 155604732 C T SHH Missense_Mutation p.G29R 0.37 tolerated(0.07) probably_damaging(0.989) TCGA-18-3409-01 7 15725862 15725862 C T MEOX2 Missense_Mutation p.E56K 0.21 deleterious(0.01) benign(0.079) TCGA-18-3409-01 7 157931004 157931004 G A PTPRN2 Missense_Mutation p.R372C 0.33 tolerated(0.06) benign(0.238) TCGA-18-3409-01 7 157959909 157959909 G A PTPRN2 Silent p.S208S 0.22 TCGA-18-3409-01 7 158677292 158677292 G A WDR60 Missense_Mutation p.R306K 0.28 tolerated(0.21) benign(0.015) TCGA-18-3409-01 7 18684330 18684330 G T HDAC9 Missense_Mutation p.D317Y 0.30 deleterious(0) possibly_damaging(0.69) TCGA-18-3409-01 7 18875092 18875092 T G HDAC9 Missense_Mutation p.D823E 0.27 deleterious(0) possibly_damaging(0.693) TCGA-18-3409-01 7 20418838 20418838 C T ITGB8 Missense_Mutation p.R185C 0.39 deleterious(0) probably_damaging(0.993) TCGA-18-3409-01 7 20683155 20683155 C T ABCB5 Missense_Mutation p.S193L 0.38 tolerated(0.64) benign(0.002) TCGA-18-3409-01 7 21778373 21778373 G A DNAH11 Missense_Mutation p.G2574E 0.40 probably_damaging(0.927) TCGA-18-3409-01 7 2257622 2257622 C T MAD1L1 Missense_Mutation p.R218K 0.38 tolerated(0.96) benign(0.008) TCGA-18-3409-01 7 2275170 2275170 C T FTSJ2 Missense_Mutation p.G110R 0.26 deleterious(0) probably_damaging(1) TCGA-18-3409-01 7 2420052 2420052 C T EIF3B 3'UTR 0.41 TCGA-18-3409-01 7 2580984 2580984 G A BRAT1 Silent p.V423V 0.33 TCGA-18-3409-01 7 2611823 2611823 C T IQCE Intron 0.27 TCGA-18-3409-01 7 2646835 2646835 C T IQCE Missense_Mutation p.S648F 0.35 deleterious(0.03) benign(0.128) TCGA-18-3409-01 7 29438081 29438081 G A CHN2 Missense_Mutation p.G90E 0.34 deleterious(0.02) possibly_damaging(0.666) TCGA-18-3409-01 7 29539651 29539651 C T CHN2 Missense_Mutation p.A303V 0.29 tolerated(0.23) benign(0.122) TCGA-18-3409-01 7 2977615 2977615 C T CARD11 Missense_Mutation p.D357N 0.42 deleterious(0) probably_damaging(1) TCGA-18-3409-01 7 2977616 2977616 C T CARD11 Silent p.K356K 0.40 TCGA-18-3409-01 7 29918688 29918688 C T WIPF3 Missense_Mutation p.P96L 0.62 deleterious(0.02) possibly_damaging(0.473) TCGA-18-3409-01 7 30831042 30831042 C T FAM188B Missense_Mutation p.P309S 0.46 tolerated(0.37) benign(0.028) TCGA-18-3409-01 7 31132350 31132350 G C ADCYAP1R1 Splice_Site p.X349_splice 0.48 TCGA-18-3409-01 7 31377977 31377977 C T NEUROD6 Silent p.Q302Q 0.21 TCGA-18-3409-01 7 31378752 31378752 C T NEUROD6 Missense_Mutation p.R44Q 0.29 tolerated(0.64) benign(0) TCGA-18-3409-01 7 31682588 31682588 G A CCDC129 Missense_Mutation p.R561K 0.24 tolerated(0.5) benign(0.341) TCGA-18-3409-01 7 31876891 31876891 G A PDE1C Missense_Mutation p.S429F 0.26 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 7 33427609 33427609 G A BBS9 Silent p.R656R 0.24 TCGA-18-3409-01 7 37988542 37988542 C T EPDR1 Missense_Mutation p.P124S 0.23 deleterious(0.04) possibly_damaging(0.823) TCGA-18-3409-01 7 38402568 38402568 C T TRGV2 Missense_Mutation p.G84E 0.30 tolerated(0.65) benign(0.023) TCGA-18-3409-01 7 38475876 38475876 G A AMPH Missense_Mutation p.S377F 0.39 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 7 38725520 38725520 C T FAM183B Missense_Mutation p.R29Q 0.28 tolerated(0.1) possibly_damaging(0.816) TCGA-18-3409-01 7 43506110 43506110 C T HECW1 Silent p.S952S 0.27 TCGA-18-3409-01 7 43594213 43594213 G A HECW1 Silent p.V1511V 0.32 TCGA-18-3409-01 7 43917324 43917324 G A URGCP Missense_Mutation p.P580S 0.42 tolerated(0.95) benign(0.015) TCGA-18-3409-01 7 43982328 43982328 G T UBE2D4 Intron 0.40 TCGA-18-3409-01 7 44178574 44178574 G A MYL7 Silent p.I158I 0.40 TCGA-18-3409-01 7 44187324 44187324 G A GCK Missense_Mutation p.S264F 0.28 deleterious(0) benign(0.239) TCGA-18-3409-01 7 44613194 44613194 G A DDX56 Silent p.L70L 0.30 TCGA-18-3409-01 7 45004658 45004658 G A MYO1G Silent p.I804I 0.50 TCGA-18-3409-01 7 45025016 45025016 A C SNHG15 RNA 0.15 TCGA-18-3409-01 7 45956837 45956837 G A IGFBP3 Missense_Mutation p.S208F 0.40 tolerated(0.11) probably_damaging(1) TCGA-18-3409-01 7 46732522 46732522 G A AC011294.3 Missense_Mutation p.L20F 0.45 possibly_damaging(0.773) TCGA-18-3409-01 7 47698586 47698586 G A C7orf65 Silent p.R72R 0.32 TCGA-18-3409-01 7 47835608 47835608 C T PKD1L1 Silent p.E2778E 0.22 TCGA-18-3409-01 7 47937673 47937673 G A PKD1L1 Missense_Mutation p.S728F 0.34 tolerated(0.2) possibly_damaging(0.51) TCGA-18-3409-01 7 48259101 48259101 A G ABCA13 Silent p.P146P 0.26 TCGA-18-3409-01 7 48267014 48267014 C T ABCA13 Silent p.T208T 0.27 TCGA-18-3409-01 7 48273711 48273711 C T ABCA13 Missense_Mutation p.T287M 0.29 benign(0.009) TCGA-18-3409-01 7 48311894 48311894 C T ABCA13 Silent p.F877F 0.24 TCGA-18-3409-01 7 48313813 48313813 C T ABCA13 Missense_Mutation p.S1517F 0.32 benign(0.22) TCGA-18-3409-01 7 48313814 48313814 C T ABCA13 Silent p.S1517S 0.35 TCGA-18-3409-01 7 48559636 48559636 G A ABCA13 Splice_Site p.X4600_splice 0.38 TCGA-18-3409-01 7 48634393 48634393 G A ABCA13 Missense_Mutation p.V4910M 0.42 probably_damaging(0.992) TCGA-18-3409-01 7 50468341 50468341 C T IKZF1 3'UTR 0.54 TCGA-18-3409-01 7 538204 538204 C T PDGFA 3'UTR 0.39 TCGA-18-3409-01 7 57187652 57187652 C T ZNF479 Silent p.E490E 0.30 TCGA-18-3409-01 7 57510026 57510026 G A ZNF716 Missense_Mutation p.R11Q 0.21 tolerated(0.6) possibly_damaging(0.587) TCGA-18-3409-01 7 57529283 57529283 G A ZNF716 Silent p.R372R 0.32 TCGA-18-3409-01 7 5769095 5769095 C A RNF216 Nonsense_Mutation p.E453* 0.30 TCGA-18-3409-01 7 6057569 6057569 C T AIMP2 Missense_Mutation p.S156F 0.25 tolerated(0.05) probably_damaging(1) TCGA-18-3409-01 7 6217551 6217551 T A CYTH3 Missense_Mutation p.N91Y 0.31 tolerated(0.05) probably_damaging(0.989) TCGA-18-3409-01 7 63538350 63538350 G A ZNF727 Missense_Mutation p.G308E 0.39 deleterious(0.04) probably_damaging(0.999) TCGA-18-3409-01 7 6370351 6370351 G A FAM220A Silent p.C145C 0.37 TCGA-18-3409-01 7 63720725 63720725 G A ZNF679 Missense_Mutation p.G56S 0.24 deleterious(0) probably_damaging(0.971) TCGA-18-3409-01 7 65227970 65227970 G A SNORA15 3'Flank 0.36 TCGA-18-3409-01 7 66103962 66103962 C T KCTD7 Missense_Mutation p.P205S 0.33 tolerated(0.12) probably_damaging(0.921) TCGA-18-3409-01 7 6628573 6628573 C T ZDHHC4 3'UTR 0.37 TCGA-18-3409-01 7 66760700 66760700 G A Y_RNA 3'Flank 0.20 TCGA-18-3409-01 7 70246667 70246667 C T AUTS2 Missense_Mutation p.P691S 0.37 tolerated(0.07) possibly_damaging(0.791) TCGA-18-3409-01 7 72657705 72657705 C T GTF2IRD2P1 RNA 0.29 TCGA-18-3409-01 7 72849152 72849152 T A FZD9 Missense_Mutation p.M272K 0.38 deleterious(0) probably_damaging(0.979) TCGA-18-3409-01 7 72891522 72891522 G A BAZ1B Missense_Mutation p.L757F 0.45 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 7 72903596 72903596 G A BAZ1B Silent p.V273V 0.33 TCGA-18-3409-01 7 73008301 73008301 G A MLXIPL Missense_Mutation p.S818F 0.14 deleterious(0) probably_damaging(0.979) TCGA-18-3409-01 7 73245659 73245659 C T CLDN4 Missense_Mutation p.S43L 0.19 deleterious(0) benign(0.187) TCGA-18-3409-01 7 73973190 73973190 G A GTF2IRD1 Splice_Site p.X735_splice 0.29 TCGA-18-3409-01 7 73973191 73973191 G A GTF2IRD1 Missense_Mutation p.G735E 0.29 deleterious(0) probably_damaging(1) TCGA-18-3409-01 7 74105324 74105324 C T GTF2I Missense_Mutation p.S40F 0.28 deleterious(0) possibly_damaging(0.668) TCGA-18-3409-01 7 74197370 74197370 G A NCF1 Silent p.G180G 0.41 TCGA-18-3409-01 7 7484115 7484115 C T COL28A1 Silent p.E505E 0.26 TCGA-18-3409-01 7 75211415 75211415 G A HIP1 Missense_Mutation p.A173V 0.26 tolerated(0.24) benign(0.17) TCGA-18-3409-01 7 75517459 75517459 C T RHBDD2 Missense_Mutation p.P296L 0.36 tolerated(0.06) benign(0.088) TCGA-18-3409-01 7 76111997 76111997 C T DTX2 Silent p.P147P 0.19 TCGA-18-3409-01 7 76132846 76132846 C T DTX2 Missense_Mutation p.P498L 0.25 deleterious(0) probably_damaging(1) TCGA-18-3409-01 7 76132847 76132847 C A DTX2 Silent p.P498P 0.24 TCGA-18-3409-01 7 76903065 76903065 C T CCDC146 Missense_Mutation p.H410Y 0.20 deleterious(0.02) benign(0.005) TCGA-18-3409-01 7 77558484 77558484 C T PHTF2 Missense_Mutation p.S359F 0.39 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 7 77764507 77764507 G A MAGI2 Silent p.I954I 0.24 TCGA-18-3409-01 7 78636505 78636505 C T MAGI2 Missense_Mutation p.D107N 0.36 deleterious(0) probably_damaging(0.992) TCGA-18-3409-01 7 82390020 82390020 C T PCLO Missense_Mutation p.D5075N 0.21 unknown(0) TCGA-18-3409-01 7 82538253 82538253 C T PCLO Silent p.L4459L 0.27 TCGA-18-3409-01 7 82546006 82546006 T G PCLO Missense_Mutation p.I3766L 0.28 unknown(0) TCGA-18-3409-01 7 82579038 82579038 G A PCLO Silent p.V3622V 0.32 TCGA-18-3409-01 7 82579134 82579134 C T PCLO Silent p.K3590K 0.32 TCGA-18-3409-01 7 82581358 82581358 C T PCLO Missense_Mutation p.D2971N 0.27 unknown(0) TCGA-18-3409-01 7 82581359 82581359 C T PCLO Silent p.R2970R 0.27 TCGA-18-3409-01 7 82582984 82582984 G A PCLO Missense_Mutation p.P2429S 0.50 unknown(0) TCGA-18-3409-01 7 82584648 82584648 G A PCLO Missense_Mutation p.P1874L 0.29 unknown(0) TCGA-18-3409-01 7 82764182 82764182 G A PCLO Missense_Mutation p.S895F 0.27 unknown(0) TCGA-18-3409-01 7 82764680 82764680 A G PCLO Missense_Mutation p.L729S 0.24 unknown(0) TCGA-18-3409-01 7 82784886 82784886 C T PCLO Silent p.G357G 0.30 TCGA-18-3409-01 7 83634661 83634661 C T SEMA3A Missense_Mutation p.G452R 0.31 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 7 84651728 84651728 C T SEMA3D Missense_Mutation p.D465N 0.30 deleterious(0.05) benign(0.047) TCGA-18-3409-01 7 86415831 86415831 C T GRM3 Silent p.I241I 0.19 TCGA-18-3409-01 7 87053293 87053293 C T ABCB4 Missense_Mutation p.G714R 0.31 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 7 87148714 87148714 G A ABCB1 Missense_Mutation p.S952F 0.35 deleterious(0.01) probably_damaging(0.939) TCGA-18-3409-01 7 87737488 87737488 C T ADAM22 Intron 0.40 TCGA-18-3409-01 7 8790773 8790773 C T NXPH1 Missense_Mutation p.R64C 0.27 tolerated(0.14) possibly_damaging(0.625) TCGA-18-3409-01 7 88424012 88424012 C T C7orf62 Missense_Mutation p.G82E 0.31 tolerated(0.07) benign(0.079) TCGA-18-3409-01 7 88963589 88963589 A T ZNF804B Silent p.A431A 0.42 TCGA-18-3409-01 7 88965077 88965077 C T ZNF804B Silent p.I927I 0.34 TCGA-18-3409-01 7 88965831 88965831 C T ZNF804B Nonsense_Mutation p.R1179* 0.33 TCGA-18-3409-01 7 892456 892456 C T SUN1 Missense_Mutation p.S307F 0.33 tolerated(0.7) possibly_damaging(0.477) TCGA-18-3409-01 7 89909084 89909084 G A C7orf63 Missense_Mutation p.E417K 0.23 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 7 91674509 91674509 C T AKAP9 Missense_Mutation p.H1784Y 0.34 possibly_damaging(0.533) TCGA-18-3409-01 7 91687575 91687575 C T AKAP9 Intron 0.26 TCGA-18-3409-01 7 92146607 92146607 G A PEX1 Missense_Mutation p.H408Y 0.29 tolerated(0.14) benign(0.298) TCGA-18-3409-01 7 93098044 93098044 C T CALCR Silent p.G186G 0.31 TCGA-18-3409-01 7 94035589 94035589 G A COL1A2 Missense_Mutation p.G190R 0.24 unknown(0) TCGA-18-3409-01 7 94052291 94052291 C T COL1A2 Missense_Mutation p.P809L 0.30 unknown(0) TCGA-18-3409-01 7 94054481 94054481 C T COL1A2 Missense_Mutation p.P909L 0.33 unknown(0) TCGA-18-3409-01 7 94180720 94180720 G A CASD1 Missense_Mutation p.G629E 0.27 tolerated(0.06) possibly_damaging(0.866) TCGA-18-3409-01 7 94232748 94232748 C T SGCE Missense_Mutation p.G227S 0.24 deleterious(0) probably_damaging(0.996) TCGA-18-3409-01 7 94293051 94293051 C T PEG10 Silent p.L61L 0.36 TCGA-18-3409-01 7 94293052 94293052 C T PEG10 Missense_Mutation p.R62C 0.33 tolerated_low_confidence(0.18) benign(0) TCGA-18-3409-01 7 94293196 94293196 G A PEG10 Missense_Mutation p.D110N 0.22 deleterious(0.04) probably_damaging(0.918) TCGA-18-3409-01 7 94937442 94937442 G A PON1 Silent p.S193S 0.28 TCGA-18-3409-01 7 95167003 95167003 C T ASB4 Missense_Mutation p.P405S 0.26 deleterious(0.01) possibly_damaging(0.701) TCGA-18-3409-01 7 95616462 95616462 C T DYNC1I1 Missense_Mutation p.L297F 0.34 deleterious(0.01) possibly_damaging(0.52) TCGA-18-3409-01 7 97363037 97363037 G A TAC1 Silent p.E42E 0.11 TCGA-18-3409-01 7 97481714 97481714 C T ASNS Missense_Mutation p.G515R 0.28 deleterious(0.01) benign(0.398) TCGA-18-3409-01 7 97482657 97482657 G A ASNS Missense_Mutation p.S427F 0.31 deleterious(0) possibly_damaging(0.849) TCGA-18-3409-01 7 99026789 99026789 G A ATP5J2-PTCD1 Silent p.T333T 0.22 TCGA-18-3409-01 7 99026790 99026790 G A ATP5J2-PTCD1 Missense_Mutation p.T333I 0.23 deleterious(0) probably_damaging(0.971) TCGA-18-3409-01 7 99313520 99313520 C T CYP3A7 Silent p.G177G 0.27 TCGA-18-3409-01 7 99654597 99654597 C T ZSCAN21 5'UTR 0.25 TCGA-18-3409-01 7 99955787 99955787 C T PILRB Intron 0.50 TCGA-18-3409-01 7 99999549 99999549 C T ZCWPW1 Silent p.R529R 0.29 TCGA-18-3409-01 8 100830947 100830947 T C VPS13B Missense_Mutation p.F2843L 0.26 tolerated(0.08) benign(0.153) TCGA-18-3409-01 8 102555584 102555584 G A GRHL2 Missense_Mutation p.A46T 0.26 deleterious(0.03) probably_damaging(0.971) TCGA-18-3409-01 8 102701575 102701575 G A NCALD Missense_Mutation p.L182F 0.43 tolerated(0.38) benign(0.18) TCGA-18-3409-01 8 10465665 10465665 C T RP1L1 Silent p.E1981E 0.32 TCGA-18-3409-01 8 10466654 10466654 C T RP1L1 Missense_Mutation p.E1652K 0.45 unknown(0) TCGA-18-3409-01 8 104898040 104898040 G A RIMS2 Missense_Mutation p.E405K 0.31 tolerated_low_confidence(0.05) possibly_damaging(0.835) TCGA-18-3409-01 8 105261767 105261767 C T RIMS2 Silent p.I1214I 0.48 TCGA-18-3409-01 8 105360851 105360851 C T DCSTAMP Missense_Mutation p.P24L 0.28 tolerated(0.13) benign(0.006) TCGA-18-3409-01 8 105360852 105360852 C T DCSTAMP Silent p.P24P 0.28 TCGA-18-3409-01 8 10557809 10557809 A C C8orf74 Missense_Mutation p.Q238P 0.21 deleterious(0.01) possibly_damaging(0.82) TCGA-18-3409-01 8 106808023 106808023 C T ZFPM2 Intron 0.38 TCGA-18-3409-01 8 107773477 107773477 C T ABRA Missense_Mutation p.D312N 0.25 deleterious(0) possibly_damaging(0.479) TCGA-18-3409-01 8 108348443 108348443 G A ANGPT1 Silent p.T170T 0.43 TCGA-18-3409-01 8 109001380 109001380 G A RSPO2 Missense_Mutation p.L63F 0.39 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 8 109001382 109001382 A G RSPO2 Missense_Mutation p.F62S 0.40 deleterious(0.05) possibly_damaging(0.678) TCGA-18-3409-01 8 109796878 109796878 C T TMEM74 Silent p.E150E 0.27 TCGA-18-3409-01 8 110425768 110425768 G A PKHD1L1 Missense_Mutation p.G785E 0.30 tolerated(0.1) possibly_damaging(0.821) TCGA-18-3409-01 8 110437378 110437378 A T PKHD1L1 Missense_Mutation p.K921I 0.31 tolerated(0.06) benign(0.06) TCGA-18-3409-01 8 110457850 110457850 C T PKHD1L1 Missense_Mutation p.L1918F 0.24 deleterious(0.01) probably_damaging(0.954) TCGA-18-3409-01 8 110530644 110530644 G A PKHD1L1 Missense_Mutation p.G3980R 0.33 tolerated(0.15) benign(0.004) TCGA-18-3409-01 8 110980452 110980452 C G KCNV1 Missense_Mutation p.K456N 0.29 deleterious(0.01) benign(0.133) TCGA-18-3409-01 8 110980599 110980599 G A KCNV1 Silent p.I407I 0.40 TCGA-18-3409-01 8 113299319 113299319 C T CSMD3 Nonsense_Mutation p.W3102* 0.24 TCGA-18-3409-01 8 113303820 113303820 G A CSMD3 Missense_Mutation p.P2965S 0.24 tolerated(0.56) probably_damaging(0.948) TCGA-18-3409-01 8 113562986 113562986 C T CSMD3 Missense_Mutation p.G1493E 0.38 tolerated(0.07) probably_damaging(0.964) TCGA-18-3409-01 8 113564835 113564835 C T CSMD3 Missense_Mutation p.G1450E 0.17 deleterious(0) possibly_damaging(0.883) TCGA-18-3409-01 8 114111025 114111025 C T CSMD3 Missense_Mutation p.D293N 0.19 deleterious(0.01) possibly_damaging(0.845) TCGA-18-3409-01 8 114290921 114290921 G A CSMD3 Silent p.F138F 0.36 TCGA-18-3409-01 8 120118127 120118127 G A COLEC10 Silent p.R177R 0.46 TCGA-18-3409-01 8 120581497 120581497 G A ENPP2 Silent p.S729S 0.42 TCGA-18-3409-01 8 120602865 120602865 C T ENPP2 Missense_Mutation p.E415K 0.34 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 8 120797488 120797488 G A TAF2 Silent p.I604I 0.23 TCGA-18-3409-01 8 121243858 121243858 G A COL14A1 Splice_Site p.X783_splice 0.28 TCGA-18-3409-01 8 124358871 124358871 G A ATAD2 Missense_Mutation p.L778F 0.36 deleterious(0.02) benign(0.031) TCGA-18-3409-01 8 125076649 125076649 C T FER1L6 Silent p.P1130P 0.24 TCGA-18-3409-01 8 125107243 125107243 G A FER1L6 Silent p.R1553R 0.41 TCGA-18-3409-01 8 125580630 125580630 C T MTSS1 Missense_Mutation p.R203Q 0.34 tolerated(1) benign(0.377) TCGA-18-3409-01 8 126021463 126021463 C T SQLE Missense_Mutation p.P329L 0.23 deleterious(0.03) possibly_damaging(0.613) TCGA-18-3409-01 8 126071656 126071656 G A KIAA0196 Silent p.I550I 0.53 TCGA-18-3409-01 8 128960293 128960293 C T TMEM75 5'UTR 0.39 TCGA-18-3409-01 8 130874574 130874574 G A FAM49B Nonsense_Mutation p.Q68* 0.27 TCGA-18-3409-01 8 131896830 131896830 C T ADCY8 Missense_Mutation p.D697N 0.28 tolerated(0.07) possibly_damaging(0.764) TCGA-18-3409-01 8 131896949 131896949 G A ADCY8 Missense_Mutation p.A657V 0.28 tolerated(0.26) probably_damaging(0.946) TCGA-18-3409-01 8 133036823 133036823 C T OC90 Missense_Mutation p.E447K 0.30 deleterious(0.01) benign(0.062) TCGA-18-3409-01 8 133036847 133036847 C T OC90 Missense_Mutation p.G439S 0.44 tolerated(0.62) benign(0.133) TCGA-18-3409-01 8 133045358 133045358 G A OC90 Missense_Mutation p.P263S 0.21 tolerated(0.19) possibly_damaging(0.465) TCGA-18-3409-01 8 133854821 133854821 C T PHF20L1 Nonsense_Mutation p.Q817* 0.40 TCGA-18-3409-01 8 135614580 135614580 G A ZFAT Missense_Mutation p.A461V 0.26 tolerated(0.14) possibly_damaging(0.82) TCGA-18-3409-01 8 136533515 136533515 G A KHDRBS3 Missense_Mutation p.E42K 0.33 tolerated(0.06) benign(0.359) TCGA-18-3409-01 8 136561054 136561054 C T KHDRBS3 Missense_Mutation p.H128Y 0.36 deleterious(0) probably_damaging(0.996) TCGA-18-3409-01 8 139144926 139144926 C T FAM135B Silent p.L1377L 0.29 TCGA-18-3409-01 8 139190891 139190891 C T FAM135B Missense_Mutation p.D306N 0.36 tolerated(0.47) possibly_damaging(0.808) TCGA-18-3409-01 8 139263169 139263169 G A FAM135B Missense_Mutation p.P153S 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-18-3409-01 8 13947878 13947878 G A SGCZ 3'UTR 0.25 TCGA-18-3409-01 8 13947879 13947879 G A SGCZ 3'UTR 0.26 TCGA-18-3409-01 8 139696711 139696711 C T COL22A1 Missense_Mutation p.G990E 0.37 unknown(0) TCGA-18-3409-01 8 140630489 140630489 C T KCNK9 3'UTR 0.17 TCGA-18-3409-01 8 142222527 142222527 C T SLC45A4 Silent p.G639G 0.35 TCGA-18-3409-01 8 142238345 142238345 G A SLC45A4 Silent p.A7A 0.45 TCGA-18-3409-01 8 142441232 142441232 C T PTP4A3 3'UTR 0.43 TCGA-18-3409-01 8 142506592 142506592 G A MROH5 5'UTR 0.41 TCGA-18-3409-01 8 143560703 143560703 C T BAI1 Silent p.A527A 0.43 TCGA-18-3409-01 8 144378708 144378708 C T ZNF696 Missense_Mutation p.T288M 0.36 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 8 144773320 144773320 C T ZNF707 Silent p.A31A 0.38 TCGA-18-3409-01 8 144773321 144773321 C T ZNF707 Missense_Mutation p.L32F 0.36 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 8 144890812 144890812 C T SCRIB Silent p.K694K 0.46 TCGA-18-3409-01 8 144940426 144940426 C T EPPK1 Silent p.R2332R 0.05 TCGA-18-3409-01 8 145160625 145160625 C T MAF1 Silent p.N13N 0.16 TCGA-18-3409-01 8 145579815 145579815 C T FBXL6 Missense_Mutation p.E429K 0.34 tolerated(0.45) benign(0.008) TCGA-18-3409-01 8 145649603 145649603 C T VPS28 Missense_Mutation p.D151N 0.41 deleterious(0.02) possibly_damaging(0.657) TCGA-18-3409-01 8 145666202 145666202 G A TONSL Missense_Mutation p.H355Y 0.29 tolerated(0.11) probably_damaging(1) TCGA-18-3409-01 8 146032912 146032912 C T ZNF517 Missense_Mutation p.P204L 0.23 deleterious(0) possibly_damaging(0.78) TCGA-18-3409-01 8 146157806 146157806 C A ZNF16 Missense_Mutation p.G123C 0.38 tolerated(0.09) possibly_damaging(0.635) TCGA-18-3409-01 8 1497405 1497405 G A DLGAP2 Silent p.R182R 0.36 TCGA-18-3409-01 8 16850674 16850674 G A FGF20 Silent p.S181S 0.24 TCGA-18-3409-01 8 17486125 17486125 C T PDGFRL Missense_Mutation p.P212L 0.24 deleterious(0.03) probably_damaging(1) TCGA-18-3409-01 8 17794743 17794743 C T PCM1 Missense_Mutation p.P66L 0.42 tolerated(0.08) probably_damaging(1) TCGA-18-3409-01 8 19810842 19810842 G A LPL Missense_Mutation p.D151N 0.46 tolerated(0.27) benign(0.032) TCGA-18-3409-01 8 22414361 22414361 G A SORBS3 Nonsense_Mutation p.W118* 0.33 TCGA-18-3409-01 8 22464806 22464806 C T CCAR2 Missense_Mutation p.P152L 0.27 deleterious(0.01) possibly_damaging(0.602) TCGA-18-3409-01 8 22880167 22880167 C T TNFRSF10B 3'UTR 0.24 TCGA-18-3409-01 8 22880168 22880168 C T TNFRSF10B 3'UTR 0.23 TCGA-18-3409-01 8 24344734 24344734 G A ADAM7 Missense_Mutation p.R332K 0.15 tolerated(0.94) benign(0.217) TCGA-18-3409-01 8 24811165 24811165 G A CTD-2168K21.2 5'Flank 0.21 TCGA-18-3409-01 8 25246721 25246721 G A DOCK5 Missense_Mutation p.E1416K 0.27 tolerated(0.13) benign(0.089) TCGA-18-3409-01 8 26365669 26365669 T A PNMA2 Missense_Mutation p.E201D 0.40 deleterious(0.01) possibly_damaging(0.531) TCGA-18-3409-01 8 27151768 27151768 G A TRIM35 Silent p.F197F 0.23 TCGA-18-3409-01 8 27516678 27516678 C T SCARA3 Missense_Mutation p.H331Y 0.37 deleterious(0.04) probably_damaging(0.968) TCGA-18-3409-01 8 27989846 27989846 C T ELP3 Silent p.S277S 0.43 TCGA-18-3409-01 8 2808739 2808739 C T CSMD1 Silent p.G3366G 0.28 TCGA-18-3409-01 8 2876151 2876151 G A CSMD1 Missense_Mutation p.S2626F 0.26 possibly_damaging(0.718) TCGA-18-3409-01 8 28906634 28906634 C T HMBOX1 Intron 0.42 TCGA-18-3409-01 8 29202988 29202988 C T DUSP4 Intron 0.27 TCGA-18-3409-01 8 2966239 2966239 C T CSMD1 Missense_Mutation p.G2214R 0.46 probably_damaging(1) TCGA-18-3409-01 8 30209761 30209761 C T TUBBP1 RNA 0.20 TCGA-18-3409-01 8 3047579 3047579 C T CSMD1 Silent p.R1751R 0.31 TCGA-18-3409-01 8 3063068 3063068 C T CSMD1 Missense_Mutation p.G1648S 0.19 benign(0.253) TCGA-18-3409-01 8 3063085 3063085 G A CSMD1 Missense_Mutation p.P1642L 0.42 probably_damaging(1) TCGA-18-3409-01 8 30695230 30695230 C T TEX15 Missense_Mutation p.G2474E 0.39 tolerated(1) benign(0) TCGA-18-3409-01 8 30695231 30695231 C T TEX15 Missense_Mutation p.G2474R 0.40 deleterious(0.04) benign(0) TCGA-18-3409-01 8 30703109 30703109 G A TEX15 Missense_Mutation p.S1142F 0.34 tolerated(0.08) possibly_damaging(0.858) TCGA-18-3409-01 8 30705259 30705259 C T TEX15 Silent p.R425R 0.25 TCGA-18-3409-01 8 32621468 32621468 T A NRG1 Missense_Mutation p.F496I 0.39 tolerated(0.33) benign(0.062) TCGA-18-3409-01 8 3267122 3267122 C T CSMD1 Missense_Mutation p.E523K 0.29 benign(0.197) TCGA-18-3409-01 8 327725 327725 G A FAM87A RNA 0.30 TCGA-18-3409-01 8 33310821 33310821 A G FUT10 Silent p.L97L 0.29 TCGA-18-3409-01 8 35406913 35406913 C T UNC5D Silent p.N69N 0.27 TCGA-18-3409-01 8 36673128 36673128 C T KCNU1 Silent p.N306N 0.30 TCGA-18-3409-01 8 37795246 37795246 C T GOT1L1 Missense_Mutation p.G107S 0.28 tolerated(0.28) benign(0.376) TCGA-18-3409-01 8 37821648 37821648 G A ADRB3 3'UTR 0.40 TCGA-18-3409-01 8 38029512 38029512 A G LSM1 Missense_Mutation p.I29T 0.30 deleterious(0.02) probably_damaging(0.977) TCGA-18-3409-01 8 39496021 39496021 C T ADAM18 Missense_Mutation p.P289S 0.23 tolerated(0.26) possibly_damaging(0.6) TCGA-18-3409-01 8 39496022 39496022 C T ADAM18 Missense_Mutation p.P289L 0.22 tolerated(0.2) probably_damaging(0.987) TCGA-18-3409-01 8 39496065 39496065 G A ADAM18 Missense_Mutation p.M303I 0.38 deleterious(0.02) benign(0.232) TCGA-18-3409-01 8 39521342 39521342 A C ADAM18 Missense_Mutation p.Y420S 0.33 tolerated(0.39) benign(0.11) TCGA-18-3409-01 8 39782800 39782800 C T IDO1 Missense_Mutation p.P256S 0.37 deleterious(0) possibly_damaging(0.506) TCGA-18-3409-01 8 39845390 39845390 G A IDO2 Silent p.G163G 0.29 TCGA-18-3409-01 8 39845422 39845422 G A IDO2 Missense_Mutation p.G174E 0.33 deleterious(0.02) possibly_damaging(0.729) TCGA-18-3409-01 8 41800488 41800488 G A KAT6A Silent p.I753I 0.14 TCGA-18-3409-01 8 42019934 42019934 C T AP3M2 Missense_Mutation p.S194L 0.38 deleterious(0.02) benign(0.201) TCGA-18-3409-01 8 42214872 42214872 C T POLB Missense_Mutation p.S171F 0.18 deleterious(0) benign(0.242) TCGA-18-3409-01 8 4495068 4495068 C T CSMD1 Missense_Mutation p.G33E 0.27 probably_damaging(1) TCGA-18-3409-01 8 48353097 48353097 C T SPIDR Missense_Mutation p.P364S 0.38 tolerated(0.06) probably_damaging(0.999) TCGA-18-3409-01 8 49986642 49986642 C T C8orf22 Missense_Mutation p.S27F 0.42 deleterious(0.03) possibly_damaging(0.758) TCGA-18-3409-01 8 52321427 52321427 G A PXDNL Silent p.L919L 0.32 TCGA-18-3409-01 8 52366184 52366184 C T PXDNL Missense_Mutation p.G382R 0.30 deleterious(0.05) possibly_damaging(0.568) TCGA-18-3409-01 8 53049180 53049180 G A ST18 Missense_Mutation p.S757F 0.42 deleterious(0) possibly_damaging(0.878) TCGA-18-3409-01 8 53071573 53071573 C T ST18 Missense_Mutation p.G564D 0.40 tolerated(0.13) probably_damaging(0.959) TCGA-18-3409-01 8 53073958 53073958 C T ST18 Missense_Mutation p.R524Q 0.40 tolerated(0.72) benign(0.007) TCGA-18-3409-01 8 53084599 53084599 T C ST18 Silent p.S274S 0.40 TCGA-18-3409-01 8 54791982 54791982 C T RGS20 Silent p.A110A 0.22 TCGA-18-3409-01 8 55540154 55540154 G A RP1 Missense_Mutation p.G1238S 0.39 tolerated(0.15) benign(0.022) TCGA-18-3409-01 8 55540733 55540733 G A RP1 Missense_Mutation p.E1431K 0.31 tolerated(1) benign(0) TCGA-18-3409-01 8 55541635 55541635 C T RP1 Silent p.I1731I 0.42 TCGA-18-3409-01 8 56436231 56436231 G A XKR4 Silent p.L466L 0.26 TCGA-18-3409-01 8 57079013 57079013 G A PLAG1 Missense_Mutation p.P431L 0.38 tolerated(0.16) benign(0.043) TCGA-18-3409-01 8 59059918 59059918 G T FAM110B 3'UTR 0.33 TCGA-18-3409-01 8 62430621 62430621 G A ASPH Silent p.F654F 0.36 TCGA-18-3409-01 8 62475376 62475376 G A ASPH Missense_Mutation p.S455F 0.28 deleterious(0) possibly_damaging(0.497) TCGA-18-3409-01 8 6366409 6366409 C T ANGPT2 Intron 0.32 TCGA-18-3409-01 8 6612607 6612607 C T AGPAT5 Missense_Mutation p.H261Y 0.38 tolerated(0.18) benign(0.026) TCGA-18-3409-01 8 67047381 67047381 G A TRIM55 Silent p.Q166Q 0.28 TCGA-18-3409-01 8 67064761 67064761 C T TRIM55 Missense_Mutation p.L379F 0.23 tolerated(0.15) benign(0.05) TCGA-18-3409-01 8 69358767 69358767 T A C8orf34 Intron 0.54 TCGA-18-3409-01 8 69358768 69358768 A T C8orf34 Intron 0.50 TCGA-18-3409-01 8 71646348 71646348 C T XKR9 Missense_Mutation p.L271F 0.24 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 8 72935239 72935239 G A TRPA1 Nonsense_Mutation p.Q1088* 0.31 TCGA-18-3409-01 8 73480246 73480246 C T KCNB2 Missense_Mutation p.P93S 0.34 deleterious(0.03) probably_damaging(0.987) TCGA-18-3409-01 8 73849725 73849725 C T KCNB2 Missense_Mutation p.S712F 0.45 tolerated_low_confidence(0.15) possibly_damaging(0.477) TCGA-18-3409-01 8 75227317 75227317 C T JPH1 Silent p.G306G 0.34 TCGA-18-3409-01 8 75262618 75262618 G A GDAP1 5'UTR 0.38 TCGA-18-3409-01 8 75925135 75925135 C T CRISPLD1 Missense_Mutation p.P130S 0.25 tolerated(0.06) benign(0.371) TCGA-18-3409-01 8 7752264 7752264 C T DEFB4A Silent p.F10F 0.17 TCGA-18-3409-01 8 77618373 77618373 C T ZFHX4 Missense_Mutation p.P684S 0.41 possibly_damaging(0.803) TCGA-18-3409-01 8 77618472 77618472 C T ZFHX4 Missense_Mutation p.H717Y 0.22 benign(0.291) TCGA-18-3409-01 8 77767134 77767134 G A ZFHX4 Silent p.R2659R 0.35 TCGA-18-3409-01 8 77767159 77767159 G A ZFHX4 Missense_Mutation p.V2668M 0.38 probably_damaging(0.931) TCGA-18-3409-01 8 77775467 77775467 C T ZFHX4 Missense_Mutation p.P3173S 0.28 probably_damaging(0.991) TCGA-18-3409-01 8 77775587 77775587 G A ZFHX4 Missense_Mutation p.E3213K 0.37 probably_damaging(0.98) TCGA-18-3409-01 8 81431659 81431659 G A ZBTB10 Missense_Mutation p.E838K 0.38 deleterious(0.03) benign(0.01) TCGA-18-3409-01 8 86163132 86163132 C T CA13 Silent p.F67F 0.36 TCGA-18-3409-01 8 87230033 87230033 C T SLC7A13 Missense_Mutation p.R282Q 0.21 deleterious(0.02) possibly_damaging(0.812) TCGA-18-3409-01 8 87591016 87591016 C T CNGB3 Silent p.P668P 0.28 TCGA-18-3409-01 8 88249162 88249162 G A CNBD1 Missense_Mutation p.G198E 0.42 deleterious(0) probably_damaging(0.99) TCGA-18-3409-01 8 88885348 88885348 G A DCAF4L2 Silent p.F284F 0.42 TCGA-18-3409-01 8 89081643 89081643 C T MMP16 Intron 0.28 TCGA-18-3409-01 8 92972741 92972741 C A RUNX1T1 Missense_Mutation p.C526F 0.22 deleterious(0) probably_damaging(0.929) TCGA-18-3409-01 8 92998451 92998451 G A RUNX1T1 Missense_Mutation p.R405W 0.49 deleterious(0.02) benign(0.117) TCGA-18-3409-01 8 93017356 93017356 C T RUNX1T1 Missense_Mutation p.R254Q 0.41 deleterious(0.03) benign(0.185) TCGA-18-3409-01 8 95539319 95539319 A G KIAA1429 Silent p.L385L 0.39 TCGA-18-3409-01 8 99101751 99101751 C T C8orf47 Missense_Mutation p.S169F 0.52 deleterious(0) benign(0.129) TCGA-18-3409-01 9 100000928 100000928 C T CCDC180 Intron 0.80 TCGA-18-3409-01 9 101806876 101806876 C T COL15A1 Silent p.I867I 0.31 TCGA-18-3409-01 9 103213214 103213214 C T MSANTD3 Missense_Mutation p.S265F 0.58 deleterious_low_confidence(0) benign(0.092) TCGA-18-3409-01 9 104048415 104048415 C T LPPR1 Silent p.F94F 0.53 TCGA-18-3409-01 9 104124868 104124868 G A BAAT Missense_Mutation p.P367S 0.45 deleterious(0.02) probably_damaging(0.997) TCGA-18-3409-01 9 104357047 104357047 G A PPP3R2 Missense_Mutation p.P56S 0.64 deleterious(0) probably_damaging(0.942) TCGA-18-3409-01 9 107332164 107332164 C T OR13C8 Missense_Mutation p.S239F 0.37 deleterious(0) probably_damaging(1) TCGA-18-3409-01 9 107651464 107651464 G A ABCA1 Silent p.L27L 0.34 TCGA-18-3409-01 9 112705264 112705264 G A PALM2 Silent p.K265K 0.30 TCGA-18-3409-01 9 113170096 113170096 G A SVEP1 Missense_Mutation p.T2595I 0.47 benign(0.108) TCGA-18-3409-01 9 113170641 113170641 G A SVEP1 Silent p.F2413F 0.43 TCGA-18-3409-01 9 113251945 113251945 G A SVEP1 Missense_Mutation p.H639Y 0.42 benign(0.008) TCGA-18-3409-01 9 114156585 114156585 C T KIAA0368 Missense_Mutation p.G1104E 0.50 tolerated(0.23) benign(0.004) TCGA-18-3409-01 9 114206714 114206714 G A KIAA0368 Missense_Mutation p.P250S 0.43 deleterious(0) probably_damaging(1) TCGA-18-3409-01 9 114304051 114304051 G A ZNF483 Missense_Mutation p.G279E 0.55 tolerated(1) probably_damaging(0.931) TCGA-18-3409-01 9 114304335 114304335 C T ZNF483 Missense_Mutation p.L374F 0.61 tolerated(0.16) possibly_damaging(0.587) TCGA-18-3409-01 9 116267661 116267661 C T RGS3 Intron 0.67 TCGA-18-3409-01 9 117064382 117064382 C T COL27A1 Silent p.I1622I 0.55 TCGA-18-3409-01 9 118989746 118989746 G A PAPPA Silent p.G716G 0.59 TCGA-18-3409-01 9 123624866 123624866 C A PHF19 Missense_Mutation p.G377V 0.39 tolerated(0.31) benign(0.001) TCGA-18-3409-01 9 123624867 123624867 C T PHF19 Missense_Mutation p.G377S 0.39 tolerated(0.89) benign(0) TCGA-18-3409-01 9 124751316 124751316 G A TTLL11 Intron 0.50 TCGA-18-3409-01 9 125145854 125145854 G A PTGS1 Missense_Mutation p.G277S 0.43 tolerated(0.5) benign(0.003) TCGA-18-3409-01 9 125377828 125377828 G A OR1Q1 Missense_Mutation p.G271D 0.44 tolerated(1) benign(0.067) TCGA-18-3409-01 9 125391009 125391009 G A OR1B1 Missense_Mutation p.P269L 0.54 tolerated(0.12) possibly_damaging(0.658) TCGA-18-3409-01 9 125585315 125585315 G A PDCL Nonsense_Mutation p.Q112* 0.46 TCGA-18-3409-01 9 125585316 125585316 G A PDCL Silent p.L111L 0.46 TCGA-18-3409-01 9 12708128 12708128 G A TYRP1 Missense_Mutation p.E465K 0.41 tolerated(0.19) possibly_damaging(0.488) TCGA-18-3409-01 9 127912080 127912080 G A PPP6C Missense_Mutation p.R301C 0.36 deleterious(0) probably_damaging(1) TCGA-18-3409-01 9 130507027 130507027 C T SH2D3C Missense_Mutation p.G539D 0.41 tolerated(0.21) benign(0.032) TCGA-18-3409-01 9 130569923 130569923 G A FPGS Missense_Mutation p.D234N 0.36 tolerated(0.17) benign(0.327) TCGA-18-3409-01 9 131105494 131105494 C T SLC27A4 Missense_Mutation p.S28F 0.39 tolerated(0.06) possibly_damaging(0.836) TCGA-18-3409-01 9 131221850 131221850 C T ODF2 Missense_Mutation p.P13S 0.33 tolerated_low_confidence(0.26) benign(0.329) TCGA-18-3409-01 9 132510953 132510953 C G PTGES Missense_Mutation p.D64H 0.50 tolerated(0.05) benign(0.426) TCGA-18-3409-01 9 134165636 134165636 C T PPAPDC3 Silent p.S84S 0.57 TCGA-18-3409-01 9 134183309 134183309 G A PPAPDC3 Splice_Site p.X151_splice 0.62 TCGA-18-3409-01 9 135942042 135942042 C T CEL Silent p.L225L 0.49 TCGA-18-3409-01 9 136270378 136270378 G A C9orf96 Missense_Mutation p.E626K 0.54 deleterious(0) probably_damaging(0.968) TCGA-18-3409-01 9 136279700 136279700 G A REXO4 Intron 0.63 TCGA-18-3409-01 9 136561474 136561474 C T SARDH Missense_Mutation p.E560K 0.53 deleterious(0) probably_damaging(0.968) TCGA-18-3409-01 9 138714017 138714017 G T CAMSAP1 Silent p.T830T 0.10 TCGA-18-3409-01 9 139360519 139360519 G A SEC16A Missense_Mutation p.H1400Y 0.56 deleterious(0.03) possibly_damaging(0.685) TCGA-18-3409-01 9 139997972 139997972 C T MAN1B1 Intron 0.27 TCGA-18-3409-01 9 140126166 140126166 C T SLC34A3 Silent p.S4S 0.60 TCGA-18-3409-01 9 14868822 14868822 G A FREM1 Missense_Mutation p.P52S 0.42 tolerated(0.05) possibly_damaging(0.688) TCGA-18-3409-01 9 16419455 16419455 G A BNC2 Silent p.S944S 0.52 TCGA-18-3409-01 9 18681849 18681849 G A ADAMTSL1 Missense_Mutation p.V461I 0.50 deleterious(0) probably_damaging(0.94) TCGA-18-3409-01 9 19325943 19325943 C T DENND4C Missense_Mutation p.P654S 0.41 tolerated(0.24) probably_damaging(1) TCGA-18-3409-01 9 21206665 21206665 C T IFNA10 Silent p.R144R 0.51 TCGA-18-3409-01 9 21968243 21968243 T A CDKN2A Splice_Site 0.62 TCGA-18-3409-01 9 32631621 32631621 C T TAF1L Silent p.E1319E 0.55 TCGA-18-3409-01 9 33256816 33256816 C T BAG1 Missense_Mutation p.E290K 0.42 deleterious(0) probably_damaging(0.995) TCGA-18-3409-01 9 33265001 33265001 G A CHMP5 5'UTR 0.55 TCGA-18-3409-01 9 34513163 34513163 G A DNAI1 Missense_Mutation p.G515S 0.37 deleterious(0.02) probably_damaging(0.993) TCGA-18-3409-01 9 35708459 35708459 G A TLN1 Missense_Mutation p.S1450F 0.65 deleterious(0) probably_damaging(0.987) TCGA-18-3409-01 9 36923392 36923392 C A PAX5 Silent p.G290G 0.30 TCGA-18-3409-01 9 43630687 43630687 G A SPATA31A6 Silent p.P5P 0.30 TCGA-18-3409-01 9 43818099 43818099 T G CNTNAP3B Missense_Mutation p.F329C 0.53 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 9 43828219 43828219 G A CNTNAP3B Missense_Mutation p.G492E 0.45 deleterious(0) probably_damaging(0.998) TCGA-18-3409-01 9 439280 439280 C T DOCK8 Silent p.V1705V 0.59 TCGA-18-3409-01 9 5753603 5753603 C T KIAA1432 Missense_Mutation p.S520F 0.27 deleterious(0) benign(0.02) TCGA-18-3409-01 9 5920369 5920369 A G KIAA2026 Missense_Mutation p.I1876T 0.53 deleterious(0) probably_damaging(0.978) TCGA-18-3409-01 9 6329102 6329102 G A TPD52L3 3'UTR 0.43 TCGA-18-3409-01 9 71503934 71503934 A G PIP5K1B Missense_Mutation p.N119S 0.50 deleterious(0.03) probably_damaging(0.999) TCGA-18-3409-01 9 71864304 71864304 C T TJP2 Missense_Mutation p.P996L 0.43 tolerated(0.06) benign(0.012) TCGA-18-3409-01 9 73213401 73213401 G A TRPM3 Silent p.I982I 0.58 TCGA-18-3409-01 9 73736271 73736271 C T TRPM3 5'UTR 0.41 TCGA-18-3409-01 9 74332991 74332991 G A TMEM2 Nonsense_Mutation p.R758* 0.44 TCGA-18-3409-01 9 74349793 74349793 G A TMEM2 Missense_Mutation p.S441F 0.55 deleterious(0.02) possibly_damaging(0.519) TCGA-18-3409-01 9 75355088 75355088 G A TMC1 Missense_Mutation p.G139E 0.48 deleterious(0) probably_damaging(0.979) TCGA-18-3409-01 9 75387402 75387402 G A TMC1 Missense_Mutation p.R272K 0.59 deleterious(0.04) benign(0.348) TCGA-18-3409-01 9 75420349 75420349 C T TMC1 Missense_Mutation p.L540F 0.42 deleterious(0.02) possibly_damaging(0.656) TCGA-18-3409-01 9 77249547 77249547 G A RORB Missense_Mutation p.G32R 0.57 deleterious(0) probably_damaging(1) TCGA-18-3409-01 9 77613660 77613660 G A C9orf41 Missense_Mutation p.P255L 0.61 deleterious(0) probably_damaging(0.997) TCGA-18-3409-01 9 78804556 78804556 C T PCSK5 Silent p.I840I 0.57 TCGA-18-3409-01 9 79321662 79321662 G A PRUNE2 Missense_Mutation p.P1843L 0.36 tolerated(0.31) benign(0.019) TCGA-18-3409-01 9 79324429 79324429 G A PRUNE2 Missense_Mutation p.L921F 0.55 tolerated(0.07) benign(0.055) TCGA-18-3409-01 9 79862249 79862249 C T VPS13A Missense_Mutation p.P659S 0.32 deleterious(0) probably_damaging(1) TCGA-18-3409-01 9 8486186 8486186 T C PTPRD Silent p.E877E 0.56 TCGA-18-3409-01 9 8500786 8500786 C T PTPRD Missense_Mutation p.S699N 0.43 deleterious(0.03) benign(0.001) TCGA-18-3409-01 9 86468574 86468574 A G KIF27 Silent p.I1109I 0.55 TCGA-18-3409-01 9 87338487 87338487 G A NTRK2 Splice_Site p.X195_splice 0.50 TCGA-18-3409-01 9 94172935 94172935 G A NFIL3 Missense_Mutation p.L28F 0.44 deleterious(0) possibly_damaging(0.851) TCGA-18-3409-01 9 94495518 94495518 G A ROR2 Missense_Mutation p.P275S 0.60 deleterious(0.03) probably_damaging(0.91) TCGA-18-3409-01 X 100170053 100170053 G A XKRX Silent p.S208S 0.70 TCGA-18-3409-01 X 101581556 101581556 G A NXF2 3'UTR 0.64 TCGA-18-3409-01 X 101823472 101823472 G A NXF4 RNA 0.64 TCGA-18-3409-01 X 105450669 105450669 G A MUM1L1 Missense_Mutation p.R415Q 0.62 tolerated(0.25) benign(0.086) TCGA-18-3409-01 X 105970510 105970510 G A RNF128 Missense_Mutation p.G123S 0.71 deleterious(0) probably_damaging(1) TCGA-18-3409-01 X 109414719 109414719 C T TMEM164 Missense_Mutation p.H220Y 0.73 deleterious(0.03) possibly_damaging(0.785) TCGA-18-3409-01 X 109694723 109694723 G A RGAG1 Missense_Mutation p.G293E 0.66 tolerated(1) benign(0.05) TCGA-18-3409-01 X 109697128 109697128 C T RGAG1 Missense_Mutation p.P1095S 0.72 tolerated(0.39) benign(0.002) TCGA-18-3409-01 X 109931896 109931896 T C CHRDL1 Missense_Mutation p.N305S 0.56 tolerated(0.61) benign(0.004) TCGA-18-3409-01 X 111155915 111155915 G A TRPC5 Silent p.I168I 0.67 TCGA-18-3409-01 X 114141439 114141439 C T HTR2C Missense_Mutation p.P280S 0.74 tolerated(0.28) benign(0.219) TCGA-18-3409-01 X 122747266 122747266 G A THOC2 Missense_Mutation p.S1554F 0.58 deleterious_low_confidence(0.01) benign(0.11) TCGA-18-3409-01 X 123518520 123518520 G A TENM1 Silent p.F2087F 0.67 TCGA-18-3409-01 X 123805542 123805542 C T TENM1 Missense_Mutation p.E387K 0.62 tolerated(0.82) benign(0.23) TCGA-18-3409-01 X 128710350 128710350 C T OCRL Silent p.L646L 0.53 TCGA-18-3409-01 X 129053249 129053249 C T UTP14A Silent p.L212L 0.67 TCGA-18-3409-01 X 130220569 130220569 T A ARHGAP36 Silent p.L472L 0.68 TCGA-18-3409-01 X 130416678 130416678 G A IGSF1 Missense_Mutation p.P329L 0.72 deleterious(0.02) probably_damaging(1) TCGA-18-3409-01 X 1321372 1321372 G A CRLF2 Missense_Mutation p.S128L 0.32 tolerated(0.29) benign(0.005) TCGA-18-3409-01 X 132159856 132159856 C T USP26 Missense_Mutation p.R798K 0.59 tolerated(0.07) benign(0.006) TCGA-18-3409-01 X 135741238 135741238 C G CD40LG Missense_Mutation p.N150K 0.59 tolerated(0.1) benign(0.129) TCGA-18-3409-01 X 135741253 135741253 G A CD40LG Silent p.L155L 0.60 TCGA-18-3409-01 X 135741254 135741254 G A CD40LG Missense_Mutation p.E156K 0.60 tolerated(0.7) benign(0.003) TCGA-18-3409-01 X 138699718 138699718 C T MCF2 Missense_Mutation p.R378Q 0.76 tolerated(0.21) benign(0.012) TCGA-18-3409-01 X 140985241 140985241 A C MAGEC3 Missense_Mutation p.E566A 0.66 deleterious(0.03) possibly_damaging(0.627) TCGA-18-3409-01 X 140995733 140995733 A G MAGEC1 Missense_Mutation p.E848G 0.76 deleterious_low_confidence(0.03) unknown(0) TCGA-18-3409-01 X 142596772 142596772 C T SPANXN3 Missense_Mutation p.E100K 0.71 tolerated_low_confidence(0.08) possibly_damaging(0.51) TCGA-18-3409-01 X 144337190 144337190 G A SPANXN1 Splice_Site p.X26_splice 0.58 TCGA-18-3409-01 X 144904756 144904756 C T SLITRK2 Silent p.S271S 0.52 TCGA-18-3409-01 X 14625263 14625263 G A GLRA2 Silent p.T196T 0.70 TCGA-18-3409-01 X 14933878 14933878 C T MOSPD2 Missense_Mutation p.P393L 0.72 tolerated(1) benign(0.006) TCGA-18-3409-01 X 150349046 150349046 G A GPR50 Missense_Mutation p.E331K 0.73 tolerated(0.08) possibly_damaging(0.504) TCGA-18-3409-01 X 152612881 152612881 C T ZNF275 Silent p.F246F 0.68 TCGA-18-3409-01 X 153577261 153577261 C T FLNA Missense_Mutation p.D2634N 0.69 deleterious(0.01) probably_damaging(0.963) TCGA-18-3409-01 X 153587670 153587670 G A FLNA Missense_Mutation p.P1416L 0.62 deleterious(0) probably_damaging(0.996) TCGA-18-3409-01 X 15364280 15364280 C T FIGF Missense_Mutation p.G347E 0.64 deleterious_low_confidence(0.03) benign(0.041) TCGA-18-3409-01 X 153648062 153648062 C T TAZ Missense_Mutation p.S187F 0.58 deleterious(0.01) possibly_damaging(0.726) TCGA-18-3409-01 X 153668445 153668445 C T GDI1 Silent p.I182I 0.65 TCGA-18-3409-01 X 1536906 1536906 T C ASMTL Silent p.Q494Q 0.28 TCGA-18-3409-01 X 154490470 154490470 A C RAB39B Missense_Mutation p.L87R 0.64 deleterious(0) probably_damaging(1) TCGA-18-3409-01 X 155004226 155004226 C T SPRY3 Silent p.F231F 0.23 TCGA-18-3409-01 X 155233218 155233218 T C IL9R Missense_Mutation p.F83L 0.34 tolerated(0.14) benign(0.234) TCGA-18-3409-01 X 21549974 21549974 G A CNKSR2 Silent p.R364R 0.44 TCGA-18-3409-01 X 215781 215781 G A PLCXD1 Missense_Mutation p.G251S 0.54 deleterious(0) probably_damaging(1) TCGA-18-3409-01 X 215782 215782 G A PLCXD1 Missense_Mutation p.G251D 0.57 deleterious(0) probably_damaging(1) TCGA-18-3409-01 X 23398342 23398342 T C PTCHD1 Missense_Mutation p.F329S 0.57 tolerated(0.32) benign(0.192) TCGA-18-3409-01 X 2408626 2408626 G A ZBED1 Silent p.I45I 0.37 TCGA-18-3409-01 X 24741283 24741283 C T POLA1 Silent p.L361L 0.53 TCGA-18-3409-01 X 26157987 26157987 C T MAGEB18 Silent p.V295V 0.65 TCGA-18-3409-01 X 3021844 3021844 C T ARSF Missense_Mutation p.P382S 0.79 deleterious(0) probably_damaging(0.999) TCGA-18-3409-01 X 30578032 30578032 C T CXorf21 Silent p.E147E 0.64 TCGA-18-3409-01 X 31893406 31893406 G A DMD Missense_Mutation p.L2333F 0.67 possibly_damaging(0.765) TCGA-18-3409-01 X 32404508 32404508 C T DMD Silent p.Q1531Q 0.70 TCGA-18-3409-01 X 32429976 32429976 C T DMD Missense_Mutation p.E1376K 0.55 possibly_damaging(0.828) TCGA-18-3409-01 X 35820350 35820350 G A MAGEB16 Missense_Mutation p.D13N 0.53 deleterious(0.04) benign(0.085) TCGA-18-3409-01 X 36163043 36163043 G A CHDC2 3'UTR 0.76 TCGA-18-3409-01 X 37029130 37029130 C T FAM47C Nonsense_Mutation p.Q883* 0.72 TCGA-18-3409-01 X 47918009 47918009 A T ZNF630 Missense_Mutation p.F608I 0.50 deleterious(0.01) benign(0.009) TCGA-18-3409-01 X 52841655 52841655 C T XAGE5 Missense_Mutation p.P22L 0.70 tolerated(0.09) benign(0.005) TCGA-18-3409-01 X 53439105 53439105 G A SMC1A Missense_Mutation p.S318F 0.35 deleterious(0.01) probably_damaging(0.931) TCGA-18-3409-01 X 54971969 54971969 C A PFKFB1 Missense_Mutation p.C334F 0.73 probably_damaging(1) TCGA-18-3409-01 X 5811208 5811208 C T NLGN4X Missense_Mutation p.D701N 0.59 deleterious(0) probably_damaging(0.98) TCGA-18-3409-01 X 63444242 63444242 C T ASB12 Silent p.L310L 0.68 TCGA-18-3409-01 X 63444870 63444870 G A ASB12 Missense_Mutation p.P221S 0.75 tolerated(0.49) possibly_damaging(0.557) TCGA-18-3409-01 X 69478397 69478397 G A P2RY4 Missense_Mutation p.P360S 0.75 tolerated_low_confidence(0.1) benign(0) TCGA-18-3409-01 X 72667453 72667453 G A CDX4 Missense_Mutation p.G122R 0.64 tolerated(0.09) benign(0.355) TCGA-18-3409-01 X 73961213 73961213 G A KIAA2022 Missense_Mutation p.P1060L 0.63 deleterious(0) probably_damaging(1) TCGA-18-3409-01 X 73962755 73962755 T A KIAA2022 Missense_Mutation p.N546I 0.56 deleterious(0) probably_damaging(1) TCGA-18-3409-01 X 74644526 74644526 A C ZDHHC15 Missense_Mutation p.Y233D 0.68 deleterious(0) probably_damaging(0.994) TCGA-18-3409-01 X 77271290 77271290 T A ATP7A Missense_Mutation p.D846E 0.61 deleterious(0.01) probably_damaging(0.999) TCGA-18-3409-01 X 78011400 78011400 C T LPAR4 Missense_Mutation p.S345F 0.64 deleterious_low_confidence(0.02) benign(0.101) TCGA-18-3409-01 X 79279581 79279581 C T TBX22 Missense_Mutation p.R126W 0.68 deleterious(0) probably_damaging(1) TCGA-18-3409-01 X 79286288 79286288 C T TBX22 Missense_Mutation p.S414F 0.61 deleterious(0) probably_damaging(0.936) TCGA-18-3409-01 X 99945580 99945580 G A SYTL4 Missense_Mutation p.P233S 0.80 tolerated(0.09) benign(0.424) TCGA-18-3409-01 Y 21868707 21868707 C A KDM5D Nonsense_Mutation p.E1348* 0.77 TCGA-18-3409-01 Y 6893165 6893165 C T TBL1Y Missense_Mutation p.R14W 0.60 deleterious(0) possibly_damaging(0.904) TCGA-18-3410-01 10 115350345 115350345 G A NRAP Nonsense_Mutation p.Q1650* 0.25 TCGA-18-3410-01 10 131958268 131958268 G A GLRX3 Missense_Mutation p.E71K 0.18 deleterious(0) probably_damaging(0.944) TCGA-18-3410-01 10 25888200 25888200 G T GPR158 Silent p.V1215V 0.25 TCGA-18-3410-01 10 31812972 31812972 G C ZEB1 Missense_Mutation p.A906P 0.17 tolerated(0.18) probably_damaging(0.998) TCGA-18-3410-01 10 44139480 44139480 T A ZNF32 3'UTR 0.39 TCGA-18-3410-01 10 51465095 51465095 G T AGAP7 Missense_Mutation p.A454D 0.50 tolerated(0.2) benign(0.014) TCGA-18-3410-01 10 5494346 5494346 G C NET1 Missense_Mutation p.R130T 0.25 deleterious(0) possibly_damaging(0.517) TCGA-18-3410-01 10 6549443 6549443 G C PRKCQ Missense_Mutation p.Q112E 0.24 tolerated(0.39) benign(0.001) TCGA-18-3410-01 10 75013679 75013679 G C TTC18 3'UTR 0.09 TCGA-18-3410-01 10 92660332 92660332 A G RPP30 Missense_Mutation p.R235G 0.63 deleterious(0) probably_damaging(0.999) TCGA-18-3410-01 10 95931253 95931253 G T PLCE1 Missense_Mutation p.E603D 0.50 deleterious(0.01) probably_damaging(0.927) TCGA-18-3410-01 11 105732836 105732836 G T GRIA4 Missense_Mutation p.V192F 0.31 tolerated(0.14) benign(0.051) TCGA-18-3410-01 11 108383320 108383320 C G EXPH5 Missense_Mutation p.G972R 0.19 tolerated(0.1) possibly_damaging(0.876) TCGA-18-3410-01 11 111228206 111228206 C G POU2AF1 Missense_Mutation p.L140F 0.16 deleterious(0.01) possibly_damaging(0.87) TCGA-18-3410-01 11 123900835 123900835 G C OR10G8 Missense_Mutation p.G169A 0.34 deleterious(0.01) probably_damaging(1) TCGA-18-3410-01 11 134130962 134130962 C T ACAD8 Nonsense_Mutation p.R244* 0.31 TCGA-18-3410-01 11 34680224 34680224 A G EHF Missense_Mutation p.K273R 0.41 tolerated(0.07) benign(0.036) TCGA-18-3410-01 11 47726218 47726218 C T AGBL2 Missense_Mutation p.E155K 0.19 tolerated(0.44) benign(0.002) TCGA-18-3410-01 11 49598298 49598298 A G RP11-707M1.1 RNA 0.18 TCGA-18-3410-01 11 51515752 51515752 G T OR4C46 Missense_Mutation p.Q157H 0.23 deleterious_low_confidence(0.03) probably_damaging(0.987) TCGA-18-3410-01 11 56310527 56310527 C A OR5M11 Silent p.V69V 0.34 TCGA-18-3410-01 11 61976227 61976227 G A SCGB2A1 Missense_Mutation p.M8I 0.38 deleterious(0.02) unknown(0) TCGA-18-3410-01 11 64518818 64518818 G C PYGM Missense_Mutation p.R650G 0.36 tolerated(0.14) probably_damaging(0.952) TCGA-18-3410-01 11 66816119 66816119 A G SYT12 Missense_Mutation p.H386R 0.38 tolerated(0.05) benign(0.114) TCGA-18-3410-01 11 67067552 67067552 G T ANKRD13D Missense_Mutation p.R344L 0.28 deleterious(0) possibly_damaging(0.491) TCGA-18-3410-01 11 67379866 67379866 G A NDUFV1 Silent p.P444P 0.38 TCGA-18-3410-01 11 69957845 69957845 G A ANO1 Missense_Mutation p.A278T 0.05 tolerated(0.59) benign(0.003) TCGA-18-3410-01 11 85701343 85701343 G C PICALM Nonsense_Mutation p.S453* 0.17 TCGA-18-3410-01 11 89531505 89531505 C T TRIM49 Silent p.K384K 0.10 TCGA-18-3410-01 12 113704132 113704132 G T TPCN1 Missense_Mutation p.A201S 0.42 tolerated(0.1) probably_damaging(0.999) TCGA-18-3410-01 12 121444121 121444121 C G C12orf43 Intron 0.11 TCGA-18-3410-01 12 124840062 124840062 T A NCOR2 Silent p.P1099P 0.33 TCGA-18-3410-01 12 22046974 22046974 G C ABCC9 Silent p.A598A 0.27 TCGA-18-3410-01 12 22678604 22678604 C G C2CD5 Missense_Mutation p.D129H 0.13 deleterious(0) benign(0.011) TCGA-18-3410-01 12 42554480 42554480 C T YAF2 Missense_Mutation p.G176S 0.35 tolerated(0.32) benign(0.048) TCGA-18-3410-01 12 49495909 49495909 C A LMBR1L Silent p.V308V 0.30 TCGA-18-3410-01 12 53455039 53455039 C G TENC1 Missense_Mutation p.Q1127E 0.21 tolerated(1) benign(0.039) TCGA-18-3410-01 12 53881050 53881050 C T MAP3K12 Silent p.L42L 0.10 TCGA-18-3410-01 12 57988919 57988919 C - PIP4K2C Frame_Shift_Del p.S96Vfs*79 0.26 TCGA-18-3410-01 12 78511809 78511809 G A NAV3 Silent p.L924L 0.14 TCGA-18-3410-01 12 85255250 85255250 G C SLC6A15 3'UTR 0.38 TCGA-18-3410-01 13 113832545 113832545 C G PCID2 Missense_Mutation p.Q443H 0.38 deleterious(0) possibly_damaging(0.879) TCGA-18-3410-01 13 39265581 39265581 G C FREM2 Missense_Mutation p.G1367A 0.62 deleterious(0.01) benign(0.336) TCGA-18-3410-01 13 77669539 77669539 C A MYCBP2 Missense_Mutation p.D3347Y 0.79 possibly_damaging(0.794) TCGA-18-3410-01 14 19563572 19563572 G A POTEG Intron 0.41 TCGA-18-3410-01 14 22309855 22309855 G C TRAV12-1 Missense_Mutation p.G79A 0.06 deleterious(0.01) probably_damaging(0.987) TCGA-18-3410-01 14 22748992 22748992 C T TRAV38-2DV8 5'UTR 0.24 TCGA-18-3410-01 14 75485636 75485636 G C MLH3 Missense_Mutation p.L1380V 0.22 deleterious(0) probably_damaging(0.925) TCGA-18-3410-01 14 93650307 93650307 T C MOAP1 Missense_Mutation p.K94R 0.33 deleterious(0.02) possibly_damaging(0.721) TCGA-18-3410-01 15 50226290 50226290 C G ATP8B4 Missense_Mutation p.M459I 0.38 tolerated(0.19) benign(0.007) TCGA-18-3410-01 15 50757333 50757333 C G USP8 Missense_Mutation p.Q211E 0.18 tolerated(0.52) benign(0.076) TCGA-18-3410-01 15 52902292 52902292 C T FAM214A Nonsense_Mutation p.W273* 0.31 TCGA-18-3410-01 15 57730732 57730732 A G CGNL1 Missense_Mutation p.T179A 0.36 tolerated(0.87) benign(0.001) TCGA-18-3410-01 15 64980844 64980844 C A OAZ2 3'UTR 0.13 TCGA-18-3410-01 15 66010252 66010252 C T DENND4A Missense_Mutation p.M557I 0.22 tolerated(0.15) benign(0.001) TCGA-18-3410-01 15 97328309 97328309 A G SPATA8 Missense_Mutation p.R94G 0.43 tolerated_low_confidence(0.2) benign(0.291) TCGA-18-3410-01 16 10031952 10031952 T C GRIN2A Missense_Mutation p.R291G 0.66 deleterious(0.01) probably_damaging(1) TCGA-18-3410-01 16 16302587 16302587 C G ABCC6 Silent p.R264R 0.28 TCGA-18-3410-01 16 18847327 18847327 T C SMG1 Missense_Mutation p.E2662G 0.67 tolerated(0.34) benign(0.107) TCGA-18-3410-01 16 27499552 27499552 C T GTF3C1 Silent p.K1232K 0.25 TCGA-18-3410-01 16 58293772 58293772 G C CCDC113 Missense_Mutation p.E187D 0.29 tolerated(0.67) benign(0.009) TCGA-18-3410-01 16 61891136 61891136 G A CDH8 Missense_Mutation p.S185F 0.29 tolerated(0.25) benign(0.002) TCGA-18-3410-01 16 66592182 66592182 C G CKLF Missense_Mutation p.I56M 0.39 deleterious(0.01) benign(0.386) TCGA-18-3410-01 16 711941 711941 G C WDR90 Silent p.S1305S 0.69 TCGA-18-3410-01 16 71417890 71417890 G A CALB2 Silent p.L165L 0.71 TCGA-18-3410-01 16 8868838 8868838 C T ABAT Missense_Mutation p.P349L 0.33 deleterious(0) probably_damaging(0.999) TCGA-18-3410-01 17 10309369 10309369 C A MYH8 Missense_Mutation p.M807I 0.51 tolerated(0.38) benign(0.177) TCGA-18-3410-01 17 11738145 11738145 G A DNAH9 Missense_Mutation p.C3146Y 0.52 probably_damaging(0.997) TCGA-18-3410-01 17 27809300 27809300 G C TAOK1 Missense_Mutation p.E217Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-18-3410-01 17 29159350 29159350 C - ATAD5 5'UTR 0.32 TCGA-18-3410-01 17 29159352 29159352 G T ATAD5 5'UTR 0.38 TCGA-18-3410-01 17 3352127 3352127 C A SPATA22 Missense_Mutation p.D216Y 0.69 tolerated(1) benign(0.022) TCGA-18-3410-01 17 34942339 34942339 C T GGNBP2 Missense_Mutation p.S479F 0.41 deleterious(0) probably_damaging(0.996) TCGA-18-3410-01 17 43350976 43350976 T A MAP3K14 Splice_Site 0.32 TCGA-18-3410-01 17 61824274 61824274 C G CCDC47 Missense_Mutation p.M473I 0.25 tolerated(0.24) benign(0) TCGA-18-3410-01 17 7386172 7386172 T C SLC35G6 Missense_Mutation p.V290A 0.12 deleterious(0) probably_damaging(0.997) TCGA-18-3410-01 17 7578212 7578212 G C TP53 Missense_Mutation p.R213G 0.50 deleterious(0.03) probably_damaging(1) TCGA-18-3410-01 18 21819282 21819282 G A OSBPL1A Missense_Mutation p.T449M 0.16 deleterious(0.01) possibly_damaging(0.459) TCGA-18-3410-01 18 2740761 2740761 C G SMCHD1 Missense_Mutation p.S1192C 0.26 deleterious(0.04) possibly_damaging(0.619) TCGA-18-3410-01 18 29617122 29617122 T C RNF125 Missense_Mutation p.W70R 0.46 tolerated(0.67) probably_damaging(0.993) TCGA-18-3410-01 18 32621631 32621631 G A MAPRE2 Intron 0.27 TCGA-18-3410-01 18 44775302 44775302 C A SKOR2 Missense_Mutation p.V85L 0.46 probably_damaging(0.998) TCGA-18-3410-01 18 5891948 5891948 C T TMEM200C Missense_Mutation p.V39M 0.24 deleterious(0) probably_damaging(0.993) TCGA-18-3410-01 19 10131451 10131451 C T RDH8 Missense_Mutation p.A190V 0.48 tolerated(0.05) possibly_damaging(0.801) TCGA-18-3410-01 19 20229530 20229530 A T ZNF90 Silent p.I389I 0.41 TCGA-18-3410-01 19 22575630 22575630 T C ZNF98 Missense_Mutation p.K136R 0.19 tolerated(0.06) benign(0.025) TCGA-18-3410-01 19 22940929 22940929 T - ZNF99 Frame_Shift_Del p.K594Nfs*20 0.24 TCGA-18-3410-01 19 23545174 23545174 C T ZNF91 Missense_Mutation p.V203I 0.11 tolerated(1) benign(0.133) TCGA-18-3410-01 19 2733429 2733429 T C SLC39A3 Missense_Mutation p.T89A 0.33 tolerated(0.08) possibly_damaging(0.718) TCGA-18-3410-01 19 3284920 3284920 G C CELF5 Missense_Mutation p.E354Q 0.17 tolerated(0.06) benign(0.002) TCGA-18-3410-01 19 37642521 37642521 C A ZNF585A Silent p.V705V 0.21 TCGA-18-3410-01 19 39521752 39521752 C G FBXO27 Missense_Mutation p.K163N 0.17 deleterious(0.03) probably_damaging(1) TCGA-18-3410-01 19 41903110 41903110 C T EXOSC5 Missense_Mutation p.D42N 0.18 deleterious(0) probably_damaging(0.999) TCGA-18-3410-01 19 44932748 44932748 G A ZNF229 Silent p.G736G 0.29 TCGA-18-3410-01 19 44932971 44932971 C T ZNF229 Missense_Mutation p.G662E 0.16 deleterious(0.02) probably_damaging(1) TCGA-18-3410-01 19 49310325 49310325 C A BCAT2 Missense_Mutation p.A11S 0.42 tolerated(0.24) benign(0.007) TCGA-18-3410-01 19 49416395 49416395 A T NUCB1 Missense_Mutation p.E203V 0.62 deleterious(0.03) possibly_damaging(0.616) TCGA-18-3410-01 19 54416243 54416243 C T CACNG7 Missense_Mutation p.A53V 0.14 tolerated(0.44) benign(0.309) TCGA-18-3410-01 19 54973455 54973455 G C LENG9 Missense_Mutation p.P441A 0.26 tolerated(0.19) benign(0.157) TCGA-18-3410-01 19 56423991 56423991 G T NLRP13 Missense_Mutation p.H398N 0.48 deleterious(0.02) possibly_damaging(0.507) TCGA-18-3410-01 19 57066051 57066051 G A ZFP28 Missense_Mutation p.A633T 0.29 tolerated(0.26) probably_damaging(0.997) TCGA-18-3410-01 19 58639169 58639169 G C ZNF329 3'UTR 0.19 TCGA-18-3410-01 19 6040087 6040087 G C RFX2 Missense_Mutation p.S142R 0.17 tolerated(0.06) possibly_damaging(0.493) TCGA-18-3410-01 19 9091388 9091388 C G MUC16 Missense_Mutation p.E143Q 0.10 unknown(0) TCGA-18-3410-01 1 114380790 114380790 T C PTPN22 Missense_Mutation p.K411R 0.47 tolerated(0.06) probably_damaging(0.942) TCGA-18-3410-01 1 120612160 120612160 A G NOTCH2 5'UTR 0.27 TCGA-18-3410-01 1 150248195 150248195 C T C1orf54 Missense_Mutation p.S59L 0.13 tolerated(0.18) benign(0.07) TCGA-18-3410-01 1 150305169 150305169 G T PRPF3 Missense_Mutation p.M146I 0.18 deleterious(0.01) possibly_damaging(0.677) TCGA-18-3410-01 1 154229595 154229595 C T UBAP2L Silent p.T738T 0.49 TCGA-18-3410-01 1 157062453 157062453 C A ETV3L Missense_Mutation p.L358F 0.24 deleterious_low_confidence(0) possibly_damaging(0.796) TCGA-18-3410-01 1 160100080 160100080 G T ATP1A2 Silent p.L550L 0.47 TCGA-18-3410-01 1 176564494 176564494 A G PAPPA2 Missense_Mutation p.N585S 0.25 deleterious(0.02) probably_damaging(0.951) TCGA-18-3410-01 1 182554630 182554630 C A RNASEL Nonsense_Mutation p.E438* 0.47 TCGA-18-3410-01 1 204948542 204948542 C A NFASC Missense_Mutation p.D677E 0.35 tolerated(0.09) possibly_damaging(0.636) TCGA-18-3410-01 1 205064080 205064080 G C RBBP5 Silent p.L503L 0.41 TCGA-18-3410-01 1 223568618 223568618 C G C1orf65 Missense_Mutation p.P601A 0.49 tolerated(1) benign(0.001) TCGA-18-3410-01 1 229772214 229772214 T C URB2 Silent p.A618A 0.49 TCGA-18-3410-01 1 24663009 24663009 C A GRHL3 Missense_Mutation p.P102T 0.19 tolerated(0.39) benign(0.012) TCGA-18-3410-01 1 32841982 32841982 G A BSDC1 Missense_Mutation p.P363L 0.27 tolerated(0.13) benign(0.003) TCGA-18-3410-01 1 3389665 3389665 G A ARHGEF16 Missense_Mutation p.R349Q 0.64 deleterious(0) probably_damaging(0.99) TCGA-18-3410-01 1 47717492 47717492 C G STIL Missense_Mutation p.L1061F 0.19 deleterious(0) probably_damaging(0.999) TCGA-18-3410-01 1 47838719 47838719 C G CMPK1 Missense_Mutation p.N137K 0.47 tolerated(0.16) benign(0.028) TCGA-18-3410-01 1 54610191 54610191 G C CDCP2 Missense_Mutation p.F125L 0.24 tolerated(0.14) possibly_damaging(0.516) TCGA-18-3410-01 1 6636553 6636553 A T TAS1R1 Missense_Mutation p.S447C 0.38 deleterious(0.02) probably_damaging(0.95) TCGA-18-3410-01 1 78098484 78098484 C A ZZZ3 Missense_Mutation p.G186W 0.20 deleterious(0.02) probably_damaging(0.955) TCGA-18-3410-01 1 78958457 78958457 T A PTGFR Missense_Mutation p.V10E 0.18 tolerated(0.97) benign(0) TCGA-18-3410-01 1 8398050 8398050 C G SLC45A1 Nonsense_Mutation p.S591* 0.15 TCGA-18-3410-01 1 85573813 85573813 C G WDR63 Missense_Mutation p.P551A 0.14 deleterious(0.04) possibly_damaging(0.677) TCGA-18-3410-01 1 85655743 85655743 C A SYDE2 Missense_Mutation p.A480S 0.45 tolerated(0.27) benign(0.007) TCGA-18-3410-01 20 13982995 13982995 C T MACROD2 Silent p.P36P 0.43 TCGA-18-3410-01 20 25462703 25462703 C G NINL Missense_Mutation p.E571Q 0.27 tolerated(0.14) benign(0.245) TCGA-18-3410-01 20 33593519 33593519 C G TRPC4AP Missense_Mutation p.E639Q 0.41 tolerated(0.27) probably_damaging(0.98) TCGA-18-3410-01 20 33593586 33593586 C G TRPC4AP Missense_Mutation p.Q616H 0.36 deleterious(0.03) probably_damaging(0.994) TCGA-18-3410-01 20 409639 409639 G A RBCK1 Silent p.Q451Q 0.21 TCGA-18-3410-01 21 10906932 10906932 G - TPTE Frame_Shift_Del p.S544Vfs*4 0.11 TCGA-18-3410-01 22 16287328 16287328 C G POTEH Missense_Mutation p.W186C 0.33 tolerated(0.13) probably_damaging(1) TCGA-18-3410-01 22 29727776 29727776 C T AP1B1 Silent p.Q813Q 0.27 TCGA-18-3410-01 22 30975749 30975749 C T PES1 Missense_Mutation p.G448E 0.24 deleterious(0.01) probably_damaging(0.996) TCGA-18-3410-01 22 30975750 30975750 C T PES1 Missense_Mutation p.G448R 0.24 deleterious(0.03) probably_damaging(0.997) TCGA-18-3410-01 22 38121252 38121252 C T TRIOBP Missense_Mutation p.P897S 0.29 deleterious_low_confidence(0.05) probably_damaging(0.998) TCGA-18-3410-01 22 42383754 42383754 C A SEPT3 Missense_Mutation p.T181K 0.17 deleterious(0) probably_damaging(0.997) TCGA-18-3410-01 22 45198006 45198006 G T ARHGAP8 Missense_Mutation p.M165I 0.55 deleterious(0.02) benign(0.403) TCGA-18-3410-01 22 50754502 50754502 G A DENND6B Silent p.S218S 0.20 TCGA-18-3410-01 2 136422968 136422968 G C R3HDM1 Intron 0.08 TCGA-18-3410-01 2 136423002 136423002 G C R3HDM1 Intron 0.14 TCGA-18-3410-01 2 141299491 141299491 T A LRP1B Missense_Mutation p.D2415V 0.23 possibly_damaging(0.804) TCGA-18-3410-01 2 166152328 166152329 - A SCN2A 5'UTR 0.21 TCGA-18-3410-01 2 179495591 179495591 G C TTN Missense_Mutation p.I14698M 0.17 TCGA-18-3410-01 2 187627145 187627145 G C FAM171B Silent p.L692L 0.19 TCGA-18-3410-01 2 190530930 190530930 A G ASNSD1 Silent p.L24L 0.28 TCGA-18-3410-01 2 190569878 190569878 A G ANKAR Missense_Mutation p.Y613C 0.27 deleterious(0.02) possibly_damaging(0.663) TCGA-18-3410-01 2 196756523 196756523 T G DNAH7 Silent p.L1634L 0.33 TCGA-18-3410-01 2 197530317 197530317 G T CCDC150 Missense_Mutation p.K224N 0.38 tolerated(0.27) benign(0.395) TCGA-18-3410-01 2 209027951 209027951 G T CRYGA Missense_Mutation p.Q77K 0.40 tolerated(0.13) benign(0) TCGA-18-3410-01 2 209027952 209027952 G T CRYGA Silent p.V76V 0.40 TCGA-18-3410-01 2 223559869 223559869 C A MOGAT1 Missense_Mutation p.P239T 0.29 deleterious(0.04) possibly_damaging(0.589) TCGA-18-3410-01 2 24222688 24222688 T A UBXN2A Missense_Mutation p.I244N 0.15 deleterious(0) probably_damaging(0.953) TCGA-18-3410-01 2 242577054 242577054 G A ATG4B 5'UTR 0.72 TCGA-18-3410-01 2 242662685 242662685 T C ING5 Missense_Mutation p.W227R 0.26 deleterious(0.02) benign(0.134) TCGA-18-3410-01 2 242755806 242755806 A G NEU4 Missense_Mutation p.Q55R 0.38 tolerated(0.05) possibly_damaging(0.894) TCGA-18-3410-01 2 37474646 37474646 A T NDUFAF7 Silent p.T328T 0.29 TCGA-18-3410-01 2 63272647 63272647 G A EHBP1 3'UTR 0.18 TCGA-18-3410-01 2 80530055 80530055 G T LRRTM1 Missense_Mutation p.P297H 0.17 tolerated(0.12) benign(0.005) TCGA-18-3410-01 2 98375392 98375392 C A TMEM131 Missense_Mutation p.W1777C 0.37 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-18-3410-01 2 98375393 98375393 C A TMEM131 Missense_Mutation p.W1777L 0.40 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-18-3410-01 3 112198390 112198390 C G BTLA Silent p.V105V 0.34 TCGA-18-3410-01 3 113524215 113524215 A G ATP6V1A Missense_Mutation p.Y535C 0.37 deleterious(0.05) probably_damaging(0.928) TCGA-18-3410-01 3 121489331 121489331 T C IQCB1 Missense_Mutation p.H553R 0.36 deleterious(0) probably_damaging(0.996) TCGA-18-3410-01 3 130305389 130305389 C T COL6A6 Missense_Mutation p.A1337V 0.40 tolerated(0.17) benign(0.002) TCGA-18-3410-01 3 138189849 138189849 C T ESYT3 Missense_Mutation p.S574F 0.12 deleterious(0) probably_damaging(0.998) TCGA-18-3410-01 3 155208639 155208639 C G PLCH1 Missense_Mutation p.E764Q 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-18-3410-01 3 171377037 171377037 C T PLD1 Missense_Mutation p.D799N 0.10 deleterious(0.02) benign(0.104) TCGA-18-3410-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.11 deleterious(0.02) probably_damaging(0.959) TCGA-18-3410-01 3 194379714 194379714 C G LSG1 Missense_Mutation p.G244A 0.23 tolerated(0.74) benign(0) TCGA-18-3410-01 3 197592992 197592992 C G LRCH3 Missense_Mutation p.S592C 0.33 deleterious(0.01) benign(0.029) TCGA-18-3410-01 3 51749755 51749755 C A GRM2 Missense_Mutation p.R656S 0.68 deleterious(0) probably_damaging(0.982) TCGA-18-3410-01 3 52265552 52265552 G C TWF2 Missense_Mutation p.R96G 0.27 deleterious(0) possibly_damaging(0.608) TCGA-18-3410-01 3 97806719 97806719 G T OR5AC2 Missense_Mutation p.G235C 0.51 deleterious(0.01) probably_damaging(0.999) TCGA-18-3410-01 4 104640772 104640772 C A TACR3 Missense_Mutation p.A21S 0.29 tolerated_low_confidence(1) benign(0.001) TCGA-18-3410-01 4 114257120 114257120 A T ANK2 Silent p.P1166P 0.35 TCGA-18-3410-01 4 121828652 121828652 T C PRDM5 Missense_Mutation p.M52V 0.33 tolerated(0.65) benign(0) TCGA-18-3410-01 4 123156042 123156042 C G KIAA1109 Missense_Mutation p.F1146L 0.09 possibly_damaging(0.471) TCGA-18-3410-01 4 141592024 141592024 G C TBC1D9 Missense_Mutation p.I372M 0.17 deleterious(0) probably_damaging(0.996) TCGA-18-3410-01 4 170428227 170428227 C A NEK1 Missense_Mutation p.K656N 0.43 deleterious(0) possibly_damaging(0.791) TCGA-18-3410-01 4 17590574 17590574 T C LAP3 Silent p.F279F 0.39 TCGA-18-3410-01 4 185678168 185678168 C T ACSL1 3'UTR 0.44 TCGA-18-3410-01 4 26667970 26667970 G T TBC1D19 Nonsense_Mutation p.E203* 0.17 TCGA-18-3410-01 4 3208226 3208226 C G HTT Missense_Mutation p.Q1908E 0.18 benign(0.069) TCGA-18-3410-01 4 44705119 44705119 G A GNPDA2 Silent p.F270F 0.24 TCGA-18-3410-01 4 56316315 56316315 A C CLOCK Missense_Mutation p.S431A 0.33 tolerated(0.1) probably_damaging(0.99) TCGA-18-3410-01 4 6043916 6043916 G A JAKMIP1 Silent p.T689T 0.42 TCGA-18-3410-01 4 66270172 66270172 G T EPHA5 Missense_Mutation p.S570R 0.44 tolerated(0.37) benign(0.36) TCGA-18-3410-01 5 112363013 112363013 C G MCC Missense_Mutation p.E1016Q 0.32 deleterious(0.02) probably_damaging(0.979) TCGA-18-3410-01 5 114879045 114879045 G C FEM1C Missense_Mutation p.A49G 0.72 tolerated(0.1) possibly_damaging(0.734) TCGA-18-3410-01 5 148700003 148700003 G A AFAP1L1 Missense_Mutation p.D559N 0.31 tolerated(0.07) benign(0.358) TCGA-18-3410-01 5 178413281 178413281 G T GRM6 Silent p.G658G 0.73 TCGA-18-3410-01 5 31983569 31983569 A G PDZD2 Missense_Mutation p.H262R 0.41 deleterious(0.03) possibly_damaging(0.545) TCGA-18-3410-01 5 32088214 32088214 G A PDZD2 Missense_Mutation p.D1554N 0.27 tolerated(0.47) benign(0.062) TCGA-18-3410-01 5 35955849 35955849 A T UGT3A1 Missense_Mutation p.M398K 0.40 deleterious(0) benign(0.049) TCGA-18-3410-01 5 37350302 37350302 G A NUP155 Silent p.F263F 0.12 TCGA-18-3410-01 5 45262343 45262343 G T HCN1 Missense_Mutation p.P785T 0.24 tolerated_low_confidence(0.13) benign(0.288) TCGA-18-3410-01 5 68616126 68616126 C T CCDC125 Missense_Mutation p.S81N 0.57 tolerated(0.14) benign(0.004) TCGA-18-3410-01 5 70856009 70856009 C G BDP1 Missense_Mutation p.P2481A 0.27 tolerated(0.21) benign(0.015) TCGA-18-3410-01 6 107111000 107111000 G C QRSL1 Missense_Mutation p.E436Q 0.30 tolerated(0.32) benign(0.292) TCGA-18-3410-01 6 136560824 136560824 G C MTFR2 Missense_Mutation p.Q217E 0.20 tolerated(0.79) benign(0.338) TCGA-18-3410-01 6 150067096 150067096 C A NUP43 Missense_Mutation p.G75C 0.52 deleterious(0) probably_damaging(0.999) TCGA-18-3410-01 6 151773689 151773689 C A C6orf211 Silent p.V3V 0.16 TCGA-18-3410-01 6 153042995 153042995 G A MYCT1 Silent p.Q105Q 0.60 TCGA-18-3410-01 6 26377346 26377346 G C BTN3A2 3'UTR 0.66 TCGA-18-3410-01 6 28116249 28116249 C G ZKSCAN8 Missense_Mutation p.L22V 0.19 tolerated(0.09) probably_damaging(0.978) TCGA-18-3410-01 6 28499635 28499635 G C GPX5 Missense_Mutation p.E108Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-18-3410-01 6 31322940 31322940 G T HLA-B Missense_Mutation p.A319E 0.27 tolerated_low_confidence(0.06) benign(0.276) TCGA-18-3410-01 6 38854590 38854590 G C DNAH8 Missense_Mutation p.Q2544H 0.24 probably_damaging(1) TCGA-18-3410-01 6 54735463 54735463 G - FAM83B Frame_Shift_Del p.K141Rfs*2 0.22 TCGA-18-3410-01 6 72975123 72975123 A G RIMS1 Silent p.K1075K 0.50 TCGA-18-3410-01 6 82922461 82922461 T C IBTK Missense_Mutation p.N752D 0.18 deleterious(0.04) benign(0.007) TCGA-18-3410-01 7 103629586 103629586 T G RELN Missense_Mutation p.E73A 0.45 tolerated(0.07) benign(0.184) TCGA-18-3410-01 7 107706244 107706244 G T LAMB4 Missense_Mutation p.S933R 0.24 deleterious(0) possibly_damaging(0.845) TCGA-18-3410-01 7 119915186 119915186 C T KCND2 Missense_Mutation p.A167V 0.25 tolerated(0.24) benign(0.001) TCGA-18-3410-01 7 129855864 129855864 C T SSMEM1 Missense_Mutation p.P97S 0.36 tolerated(1) benign(0.001) TCGA-18-3410-01 7 142224031 142224031 A C TRBV11-1 Missense_Mutation p.S46A 0.40 deleterious(0.03) possibly_damaging(0.817) TCGA-18-3410-01 7 2740387 2740387 T C AMZ1 Missense_Mutation p.I101T 0.31 deleterious(0) possibly_damaging(0.844) TCGA-18-3410-01 7 42972006 42972006 C G MRPL32 Silent p.V7V 0.43 TCGA-18-3410-01 7 88963091 88963091 C T ZNF804B Silent p.C265C 0.50 TCGA-18-3410-01 7 92987869 92987869 G C CCDC132 3'UTR 0.17 TCGA-18-3410-01 7 98506544 98506544 G C TRRAP Missense_Mutation p.E437Q 0.08 benign(0.004) TCGA-18-3410-01 8 103299702 103299702 C G UBR5 Missense_Mutation p.R1639P 0.38 deleterious(0.01) probably_damaging(0.986) TCGA-18-3410-01 8 105235977 105235977 C T RIMS2 Intron 0.55 TCGA-18-3410-01 8 109215290 109215290 C A EIF3E Missense_Mutation p.K407N 0.42 tolerated(0.14) possibly_damaging(0.581) TCGA-18-3410-01 8 143995723 143995723 A G CYP11B2 Missense_Mutation p.I304T 0.40 deleterious(0) possibly_damaging(0.862) TCGA-18-3410-01 8 145058587 145058587 G A PARP10 Nonsense_Mutation p.Q491* 0.32 TCGA-18-3410-01 8 18730071 18730071 G A PSD3 Silent p.H101H 0.32 TCGA-18-3410-01 8 23423786 23423786 G C SLC25A37 Missense_Mutation p.E126Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-18-3410-01 8 27737097 27737097 C G SCARA5 Missense_Mutation p.R447P 0.13 deleterious(0.01) possibly_damaging(0.546) TCGA-18-3410-01 8 55539799 55539799 T C RP1 Silent p.S1119S 0.29 TCGA-18-3410-01 8 77618478 77618478 C T ZFHX4 Nonsense_Mutation p.Q719* 0.33 TCGA-18-3410-01 8 89086966 89086966 C G MMP16 Missense_Mutation p.Q363H 0.35 deleterious(0.05) benign(0.022) TCGA-18-3410-01 9 109685872 109685872 G C ZNF462 Missense_Mutation p.E70Q 0.10 benign(0.403) TCGA-18-3410-01 9 120475852 120475852 T - TLR4 Frame_Shift_Del p.F483Sfs*13 0.38 TCGA-18-3410-01 9 123591456 123591456 C T PSMD5 Missense_Mutation p.E198K 0.20 tolerated(0.83) possibly_damaging(0.906) TCGA-18-3410-01 9 132689609 132689609 C T FNBP1 Silent p.E218E 0.21 TCGA-18-3410-01 9 6604779 6604779 C T GLDC Silent p.L289L 0.61 TCGA-18-3410-01 9 79896842 79896842 G T VPS13A Missense_Mutation p.K988N 0.87 tolerated(0.2) probably_damaging(0.992) TCGA-18-3410-01 9 84562656 84562656 C A RP11-383M4.6 Intron 0.68 TCGA-18-3410-01 X 105280577 105280577 A T SERPINA7 Missense_Mutation p.V158D 0.77 deleterious(0) probably_damaging(0.987) TCGA-18-3410-01 X 108635314 108635314 G C GUCY2F Silent p.L869L 0.29 TCGA-18-3410-01 X 111025218 111025218 C G TRPC5 Missense_Mutation p.C682S 0.72 deleterious(0.04) benign(0.017) TCGA-18-3410-01 X 129545364 129545364 C T RBMX2 Missense_Mutation p.R116W 0.18 deleterious(0.01) benign(0.072) TCGA-18-3410-01 X 153628656 153628656 C T RPL10 Intron 0.44 TCGA-18-3410-01 X 153631373 153631373 G A DNASE1L1 Silent p.R228R 0.37 TCGA-18-3410-01 X 17043189 17043189 C A REPS2 Missense_Mutation p.T185K 0.30 tolerated(0.36) benign(0.01) TCGA-18-3410-01 X 19368220 19368220 G T PDHA1 Missense_Mutation p.D133Y 0.79 deleterious(0.02) probably_damaging(1) TCGA-18-3410-01 X 34149721 34149721 C T FAM47A Silent p.P225P 0.78 TCGA-18-3410-01 X 79277758 79277758 C T TBX22 5'UTR 0.75 TCGA-18-3411-01 10 101503802 101503802 C G CUTC Missense_Mutation p.R138G 0.14 tolerated(0.19) benign(0.021) TCGA-18-3411-01 10 105372887 105372887 C A SH3PXD2A Silent p.L299L 0.56 TCGA-18-3411-01 10 105807833 105807833 G A COL17A1 Missense_Mutation p.P753S 0.19 probably_damaging(0.953) TCGA-18-3411-01 10 118368682 118368682 T G PNLIPRP1 3'UTR 0.78 TCGA-18-3411-01 10 30316392 30316392 C T KIAA1462 Silent p.R895R 0.20 TCGA-18-3411-01 10 34625161 34625161 C T PARD3 Silent p.E860E 0.58 TCGA-18-3411-01 10 373117 373117 C A DIP2C Splice_Site p.X1252_splice 0.73 TCGA-18-3411-01 10 43089100 43089100 C T ZNF33B Missense_Mutation p.R433K 0.21 deleterious(0.04) probably_damaging(0.998) TCGA-18-3411-01 10 74831843 74831843 C T P4HA1 Missense_Mutation p.R90H 0.18 tolerated(0.05) probably_damaging(1) TCGA-18-3411-01 10 82049271 82049271 T C MAT1A 5'UTR 0.23 TCGA-18-3411-01 11 117321399 117321399 C T DSCAML1 Missense_Mutation p.G1252S 0.15 tolerated(0.09) probably_damaging(0.996) TCGA-18-3411-01 11 123848350 123848350 G A OR10S1 Missense_Mutation p.P17S 0.66 tolerated(0.89) benign(0.003) TCGA-18-3411-01 11 123893737 123893737 C G OR10G9 Silent p.L6L 0.58 TCGA-18-3411-01 11 124189744 124189744 G T OR8D2 Missense_Mutation p.A117D 0.16 deleterious(0) benign(0.368) TCGA-18-3411-01 11 128628020 128628020 C A FLI1 Nonsense_Mutation p.S10* 0.82 TCGA-18-3411-01 11 130781571 130781571 C A SNX19 Missense_Mutation p.Q590H 0.65 deleterious(0) probably_damaging(1) TCGA-18-3411-01 11 14666331 14666331 T C PDE3B Missense_Mutation p.L237P 0.70 deleterious(0) probably_damaging(0.999) TCGA-18-3411-01 11 18456380 18456380 G A LDHC Missense_Mutation p.R171H 0.64 tolerated(0.13) probably_damaging(1) TCGA-18-3411-01 11 1862288 1862288 G T TNNI2 Missense_Mutation p.D102Y 0.76 deleterious(0) probably_damaging(0.998) TCGA-18-3411-01 11 1959678 1959678 G C TNNT3 Missense_Mutation p.A245P 0.13 deleterious(0.04) possibly_damaging(0.886) TCGA-18-3411-01 11 30926574 30926574 T C DCDC1 Missense_Mutation p.I1414M 0.13 deleterious(0) possibly_damaging(0.506) TCGA-18-3411-01 11 4388990 4388990 G A OR52B4 Missense_Mutation p.T179I 0.75 deleterious(0.01) probably_damaging(0.986) TCGA-18-3411-01 11 44939553 44939553 G T TSPAN18 Missense_Mutation p.A97S 0.59 tolerated(0.15) benign(0.279) TCGA-18-3411-01 11 55136154 55136154 C A OR4A15 Missense_Mutation p.F265L 0.68 tolerated_low_confidence(1) benign(0.007) TCGA-18-3411-01 11 55322087 55322087 T C OR4C15 Missense_Mutation p.L102P 0.65 tolerated_low_confidence(0.15) benign(0.242) TCGA-18-3411-01 11 55944825 55944825 C A OR5J2 Missense_Mutation p.H244Q 0.74 deleterious(0) probably_damaging(0.995) TCGA-18-3411-01 11 56128066 56128066 T G OR8J1 Missense_Mutation p.L115R 0.61 deleterious(0) probably_damaging(1) TCGA-18-3411-01 11 56128067 56128067 G T OR8J1 Silent p.L115L 0.58 TCGA-18-3411-01 11 58893299 58893299 A G FAM111B Missense_Mutation p.I577V 0.17 deleterious(0) possibly_damaging(0.874) TCGA-18-3411-01 11 62520528 62520528 G A ZBTB3 Silent p.D253D 0.16 TCGA-18-3411-01 11 6898522 6898522 T A OR10A4 Missense_Mutation p.I215N 0.63 deleterious(0) probably_damaging(0.992) TCGA-18-3411-01 11 88911101 88911101 C A TYR 5'UTR 0.70 TCGA-18-3411-01 12 1005592 1005592 C G WNK1 Missense_Mutation p.P1980R 0.55 deleterious_low_confidence(0.04) possibly_damaging(0.866) TCGA-18-3411-01 12 101514370 101514370 A G ANO4 Silent p.L846L 0.39 TCGA-18-3411-01 12 104487333 104487333 A G HCFC2 Missense_Mutation p.K485R 0.16 tolerated(0.58) benign(0.146) TCGA-18-3411-01 12 110565897 110565897 G A IFT81 Missense_Mutation p.R64Q 0.11 deleterious(0) probably_damaging(0.997) TCGA-18-3411-01 12 112673472 112673472 C T HECTD4 Missense_Mutation p.R1708Q 0.33 possibly_damaging(0.884) TCGA-18-3411-01 12 113435444 113435444 A G OAS2 Silent p.R249R 0.22 TCGA-18-3411-01 12 116453077 116453077 C A MED13L Nonsense_Mutation p.E338* 0.44 TCGA-18-3411-01 12 130184572 130184572 G A TMEM132D Missense_Mutation p.R251W 0.52 deleterious(0.03) benign(0.073) TCGA-18-3411-01 12 133220500 133220500 C T POLE Missense_Mutation p.D1405N 0.22 deleterious(0.04) benign(0.001) TCGA-18-3411-01 12 13717533 13717533 C T GRIN2B Missense_Mutation p.R880H 0.11 tolerated(0.05) benign(0.018) TCGA-18-3411-01 12 15669838 15669838 A G PTPRO Missense_Mutation p.E576G 0.14 deleterious(0.03) probably_damaging(0.931) TCGA-18-3411-01 12 18691185 18691185 G T PIK3C2G Missense_Mutation p.C1099F 0.54 deleterious(0) probably_damaging(1) TCGA-18-3411-01 12 19511295 19511295 A G PLEKHA5 Missense_Mutation p.N1091S 0.14 tolerated(0.77) benign(0.002) TCGA-18-3411-01 12 20766412 20766412 C G PDE3A Silent p.V349V 0.13 TCGA-18-3411-01 12 20766502 20766502 C G PDE3A Missense_Mutation p.N379K 0.21 tolerated(0.12) benign(0.348) TCGA-18-3411-01 12 21011372 21011372 G T LST3 Splice_Site p.X76_splice 0.61 TCGA-18-3411-01 12 21207483 21207483 G T SLCO1B7 Missense_Mutation p.R485M 0.62 tolerated(0.17) benign(0.022) TCGA-18-3411-01 12 29648370 29648370 G A OVCH1 Missense_Mutation p.T101I 0.22 tolerated(0.31) benign(0.009) TCGA-18-3411-01 12 32137484 32137484 G T KIAA1551 Nonsense_Mutation p.E1199* 0.19 TCGA-18-3411-01 12 3701428 3701428 G T PRMT8 Missense_Mutation p.Q337H 0.52 deleterious(0) probably_damaging(0.945) TCGA-18-3411-01 12 40013232 40013232 G T ABCD2 Missense_Mutation p.N62K 0.17 tolerated(0.7) benign(0.001) TCGA-18-3411-01 12 49425673 49425673 C T KMT2D Missense_Mutation p.G4272D 0.41 unknown(0) TCGA-18-3411-01 12 49691473 49691473 G A PRPH Missense_Mutation p.V411I 0.13 tolerated(0.67) benign(0.001) TCGA-18-3411-01 12 49934881 49934881 G T KCNH3 Missense_Mutation p.E92D 0.46 deleterious(0.01) probably_damaging(0.989) TCGA-18-3411-01 12 52162951 52162951 C T SCN8A Silent p.S1068S 0.20 TCGA-18-3411-01 12 64199137 64199137 G C TMEM5 Missense_Mutation p.L289F 0.15 deleterious(0.03) benign(0.099) TCGA-18-3411-01 12 68051114 68051114 A G DYRK2 Missense_Mutation p.M143V 0.48 tolerated(0.61) benign(0) TCGA-18-3411-01 12 69747044 69747044 A C LYZ 3'UTR 0.14 TCGA-18-3411-01 12 93221723 93221723 C A EEA1 Missense_Mutation p.D457Y 0.11 deleterious(0) probably_damaging(0.98) TCGA-18-3411-01 12 988914 988914 A G WNK1 Missense_Mutation p.H850R 0.47 deleterious(0.02) possibly_damaging(0.793) TCGA-18-3411-01 13 26436473 26436473 C T ATP8A2 Missense_Mutation p.T1037I 0.70 tolerated(0.98) benign(0.001) TCGA-18-3411-01 13 30091888 30091888 G C SLC7A1 Silent p.A444A 0.12 TCGA-18-3411-01 13 38143490 38143490 C T POSTN Missense_Mutation p.G793D 0.64 tolerated_low_confidence(0.06) benign(0.101) TCGA-18-3411-01 13 39612853 39612853 G A NHLRC3 Missense_Mutation p.G26D 0.24 tolerated_low_confidence(0.23) benign(0.006) TCGA-18-3411-01 13 52976805 52976805 C T THSD1 5'UTR 0.62 TCGA-18-3411-01 14 20296075 20296075 C A OR4N2 Silent p.S156S 0.54 TCGA-18-3411-01 14 20403995 20403995 C T OR4K1 Missense_Mutation p.S57F 0.46 deleterious(0) probably_damaging(0.933) TCGA-18-3411-01 14 21831050 21831050 T C SUPT16H Missense_Mutation p.H523R 0.58 deleterious(0.01) benign(0.045) TCGA-18-3411-01 14 24618034 24618034 C G RNF31 Missense_Mutation p.P194A 0.14 tolerated(0.16) benign(0.188) TCGA-18-3411-01 14 38679162 38679162 C A SSTR1 Missense_Mutation p.L190M 0.35 deleterious(0.02) probably_damaging(0.992) TCGA-18-3411-01 14 42356638 42356638 T C LRFN5 Silent p.T270T 0.21 TCGA-18-3411-01 14 42356639 42356639 G T LRFN5 Missense_Mutation p.G271C 0.23 deleterious(0.04) probably_damaging(0.99) TCGA-18-3411-01 14 45540921 45540921 A T FAM179B Missense_Mutation p.Y1606F 0.38 tolerated(0.27) benign(0.159) TCGA-18-3411-01 14 53417288 53417288 G A FERMT2 5'UTR 0.48 TCGA-18-3411-01 14 54416746 54416746 G A BMP4 3'UTR 0.79 TCGA-18-3411-01 14 73425438 73425438 G T DCAF4 Silent p.R471R 0.26 TCGA-18-3411-01 14 74824319 74824319 C A VRTN Missense_Mutation p.P278H 0.61 deleterious(0.01) probably_damaging(1) TCGA-18-3411-01 14 78399816 78399816 T C ADCK1 3'UTR 0.09 TCGA-18-3411-01 14 86088550 86088550 A T FLRT2 Missense_Mutation p.K231M 0.15 deleterious(0) possibly_damaging(0.617) TCGA-18-3411-01 14 94120145 94120145 C G UNC79 Missense_Mutation p.F1909L 0.50 tolerated(1) benign(0.304) TCGA-18-3411-01 14 94712742 94712742 C A PPP4R4 Silent p.R493R 0.24 TCGA-18-3411-01 15 102346508 102346508 G C OR4F6 Missense_Mutation p.G196R 0.19 deleterious_low_confidence(0) benign(0.158) TCGA-18-3411-01 15 26812801 26812801 A T GABRB3 Silent p.S254S 0.33 TCGA-18-3411-01 15 43559035 43559035 T C TGM5 Intron 0.68 TCGA-18-3411-01 15 49907421 49907421 A T FAM227B 5'UTR 0.14 TCGA-18-3411-01 15 50526174 50526174 G T SLC27A2 Missense_Mutation p.R555S 0.68 tolerated(0.17) possibly_damaging(0.517) TCGA-18-3411-01 15 59752205 59752205 C A FAM81A Missense_Mutation p.Q32K 0.30 tolerated(0.5) possibly_damaging(0.469) TCGA-18-3411-01 15 66801146 66801146 G T ZWILCH Intron 0.28 TCGA-18-3411-01 15 73624553 73624553 G C HCN4 Missense_Mutation p.H430Q 0.07 deleterious(0) benign(0.126) TCGA-18-3411-01 15 76449078 76449078 A G C15orf27 Missense_Mutation p.I121V 0.20 deleterious(0.02) probably_damaging(0.978) TCGA-18-3411-01 15 83795599 83795599 G C TM6SF1 Missense_Mutation p.Q267H 0.24 deleterious(0) probably_damaging(1) TCGA-18-3411-01 15 86800204 86800204 G T AGBL1 Missense_Mutation p.V240F 0.12 deleterious(0.03) benign(0.223) TCGA-18-3411-01 16 12758807 12758807 C A CPPED1 Missense_Mutation p.S294I 0.19 deleterious(0.01) benign(0.211) TCGA-18-3411-01 16 15814079 15814079 C T MYH11 Missense_Mutation p.D1635N 0.11 benign(0.02) TCGA-18-3411-01 16 27772739 27772739 C T KIAA0556 Nonsense_Mutation p.Q1213* 0.62 TCGA-18-3411-01 16 28109925 28109925 C A XPO6 Silent p.L1104L 0.62 TCGA-18-3411-01 16 28619685 28619685 G A SULT1A1 Missense_Mutation p.P100L 0.23 deleterious(0.01) benign(0.077) TCGA-18-3411-01 16 30975589 30975589 C T SETD1A Missense_Mutation p.P272S 0.21 probably_damaging(0.996) TCGA-18-3411-01 16 4247818 4247818 G C SRL Missense_Mutation p.R120G 0.64 tolerated(0.06) benign(0.037) TCGA-18-3411-01 16 66950320 66950320 G A CDH16 Missense_Mutation p.R48C 0.28 tolerated(0.21) benign(0.004) TCGA-18-3411-01 16 67920066 67920068 GCT - NRN1L In_Frame_Del p.L135del 0.53 TCGA-18-3411-01 16 68358611 68358611 G A PRMT7 Missense_Mutation p.R53Q 0.09 tolerated(0.18) benign(0.006) TCGA-18-3411-01 16 70989434 70989434 C A HYDIN Missense_Mutation p.V2054F 0.22 possibly_damaging(0.505) TCGA-18-3411-01 16 71103239 71103239 C T HYDIN Missense_Mutation p.M635I 0.12 benign(0.008) TCGA-18-3411-01 16 72159293 72159293 C G PMFBP1 Silent p.V755V 0.12 TCGA-18-3411-01 16 74666541 74666541 T C RFWD3 Missense_Mutation p.N486S 0.18 deleterious(0.03) benign(0.311) TCGA-18-3411-01 16 77850871 77850871 C T VAT1L Missense_Mutation p.P96L 0.16 deleterious(0.01) benign(0.381) TCGA-18-3411-01 16 84188191 84188191 G A DNAAF1 Missense_Mutation p.R121H 0.14 deleterious(0.02) benign(0.357) TCGA-18-3411-01 16 86544553 86544553 G C FOXF1 Silent p.P126P 0.59 TCGA-18-3411-01 16 89294627 89294627 C A ZNF778 Missense_Mutation p.P616H 0.20 deleterious(0) probably_damaging(1) TCGA-18-3411-01 17 10426947 10426947 C A MYH2 Missense_Mutation p.D1780Y 0.58 deleterious(0) probably_damaging(0.988) TCGA-18-3411-01 17 18891670 18891670 C G FAM83G Missense_Mutation p.D194H 0.07 deleterious(0) probably_damaging(0.982) TCGA-18-3411-01 17 21730922 21730922 G A UBBP4 Missense_Mutation p.G75D 0.18 tolerated(0.12) benign(0.138) TCGA-18-3411-01 17 2866729 2866729 C A RAP1GAP2 Missense_Mutation p.D84E 0.27 tolerated(0.1) benign(0.014) TCGA-18-3411-01 17 29162409 29162409 T A ATAD5 Missense_Mutation p.V437E 0.40 tolerated(1) benign(0) TCGA-18-3411-01 17 31098203 31098203 A G MYO1D Silent p.S218S 0.13 TCGA-18-3411-01 17 33463218 33463218 C T NLE1 Silent p.E327E 0.06 TCGA-18-3411-01 17 33904432 33904432 C A PEX12 Missense_Mutation p.R102I 0.41 tolerated(0.19) benign(0.15) TCGA-18-3411-01 17 36353689 36353689 G A RP11-1407O15.2 Missense_Mutation p.P391L 0.09 TCGA-18-3411-01 17 39406040 39406040 G T KRTAP9-4 Missense_Mutation p.C23F 0.30 deleterious(0) unknown(0) TCGA-18-3411-01 17 39623327 39623327 C T KRT32 Missense_Mutation p.G84D 0.11 tolerated(0.06) benign(0.016) TCGA-18-3411-01 17 39974690 39974690 G A FKBP10 Missense_Mutation p.G213D 0.42 deleterious(0) probably_damaging(1) TCGA-18-3411-01 17 42478425 42478425 G A GPATCH8 Silent p.D340D 0.50 TCGA-18-3411-01 17 45219266 45219266 G A CDC27 Silent p.L508L 0.04 TCGA-18-3411-01 17 48185764 48185764 G T PDK2 Nonsense_Mutation p.E282* 0.24 TCGA-18-3411-01 17 54940110 54940117 CTCTAGTA - DGKE Frame_Shift_Del p.S555Ffs*10 0.22 TCGA-18-3411-01 17 56247070 56247070 G A OR4D2 Silent p.S18S 0.42 TCGA-18-3411-01 17 56270463 56270463 G A EPX Silent p.V47V 0.34 TCGA-18-3411-01 17 56573053 56573053 G A MTMR4 Missense_Mutation p.P817L 0.15 tolerated_low_confidence(0.12) benign(0.305) TCGA-18-3411-01 17 57297902 57297902 C T GDPD1 5'UTR 0.32 TCGA-18-3411-01 17 57743957 57743957 A G CLTC Silent p.L633L 0.43 TCGA-18-3411-01 17 58040613 58040613 G A RNFT1 Missense_Mutation p.S30L 0.18 tolerated(0.29) benign(0.001) TCGA-18-3411-01 17 67077276 67077276 A T ABCA6 Missense_Mutation p.L1543M 0.18 tolerated(0.06) benign(0.064) TCGA-18-3411-01 17 7577046 7577046 C A TP53 Nonsense_Mutation p.E298* 0.60 TCGA-18-3411-01 17 77082341 77082341 A G ENGASE Silent p.E714E 0.26 TCGA-18-3411-01 17 7840130 7840130 C A CNTROB Missense_Mutation p.Q275K 0.68 tolerated(0.16) possibly_damaging(0.897) TCGA-18-3411-01 18 10485545 10485545 G C APCDD1 Silent p.L287L 0.11 TCGA-18-3411-01 18 10675257 10675257 C T PIEZO2 Missense_Mutation p.V2591M 0.09 deleterious(0) benign(0.101) TCGA-18-3411-01 18 2946152 2946152 G A LPIN2 Intron 0.34 TCGA-18-3411-01 18 29487430 29487430 C G TRAPPC8 Missense_Mutation p.G461A 0.07 tolerated(0.06) probably_damaging(0.935) TCGA-18-3411-01 18 31432874 31432874 G T NOL4 Silent p.R617R 0.29 TCGA-18-3411-01 18 32455336 32455336 G A DTNA Missense_Mutation p.G539E 0.66 deleterious(0) possibly_damaging(0.786) TCGA-18-3411-01 18 346412 346412 C G COLEC12 Missense_Mutation p.D404H 0.15 deleterious(0.01) probably_damaging(0.99) TCGA-18-3411-01 18 51820157 51820157 A G POLI Missense_Mutation p.I515V 0.33 tolerated(0.41) benign(0.002) TCGA-18-3411-01 18 52924583 52924583 G A TCF4 Missense_Mutation p.S472L 0.39 deleterious(0.01) benign(0.132) TCGA-18-3411-01 18 59972682 59972682 A C KIAA1468 Missense_Mutation p.D1189A 0.16 deleterious(0) probably_damaging(0.972) TCGA-18-3411-01 18 76756945 76756945 C A SALL3 Missense_Mutation p.L1176M 0.41 deleterious(0) probably_damaging(0.999) TCGA-18-3411-01 18 76757113 76757113 G A SALL3 Missense_Mutation p.V1232I 0.08 deleterious(0) probably_damaging(0.996) TCGA-18-3411-01 19 10251824 10251824 G T DNMT1 Missense_Mutation p.N1117K 0.13 tolerated(0.14) benign(0.217) TCGA-18-3411-01 19 12090769 12090769 A T ZNF763 3'UTR 0.24 TCGA-18-3411-01 19 15484801 15484801 G C AKAP8 Missense_Mutation p.A56G 0.09 deleterious(0.01) benign(0.26) TCGA-18-3411-01 19 19338799 19338799 G C NCAN Silent p.L790L 0.62 TCGA-18-3411-01 19 19338800 19338800 G T NCAN Missense_Mutation p.D791Y 0.61 tolerated(0.15) benign(0.002) TCGA-18-3411-01 19 20003536 20003536 C A ZNF253 Missense_Mutation p.L494I 0.13 tolerated_low_confidence(0.53) benign(0.035) TCGA-18-3411-01 19 22154213 22154213 C T ZNF208 Nonsense_Mutation p.W1208* 0.57 TCGA-18-3411-01 19 22362343 22362343 C A ZNF676 3'UTR 0.15 TCGA-18-3411-01 19 23542365 23542365 C G ZNF91 Missense_Mutation p.C1139S 0.33 deleterious(0.02) possibly_damaging(0.829) TCGA-18-3411-01 19 30935497 30935497 A G ZNF536 Missense_Mutation p.N343S 0.10 tolerated(0.46) benign(0.038) TCGA-18-3411-01 19 30935825 30935825 C G ZNF536 Silent p.L452L 0.21 TCGA-18-3411-01 19 31039661 31039661 C T ZNF536 Silent p.A1045A 0.23 TCGA-18-3411-01 19 35630999 35630999 C A FXYD1 Missense_Mutation p.H6N 0.47 deleterious(0.04) benign(0.038) TCGA-18-3411-01 19 36398473 36398473 C A TYROBP Missense_Mutation p.C35F 0.26 deleterious(0) probably_damaging(1) TCGA-18-3411-01 19 37130589 37130589 C G ZNF461 Missense_Mutation p.E220Q 0.40 deleterious(0.02) benign(0.072) TCGA-18-3411-01 19 37643905 37643905 T A ZNF585A Missense_Mutation p.E244V 0.54 tolerated(0.12) benign(0.012) TCGA-18-3411-01 19 37660760 37660762 TCC - ZNF585A 5'UTR 0.19 TCGA-18-3411-01 19 40363895 40363895 C G FCGBP Missense_Mutation p.G4916A 0.11 possibly_damaging(0.475) TCGA-18-3411-01 19 46313858 46313858 C A RSPH6A Intron 0.20 TCGA-18-3411-01 19 53989949 53989949 C T ZNF813 Missense_Mutation p.P27S 0.05 tolerated(0.05) possibly_damaging(0.856) TCGA-18-3411-01 19 54198504 54198504 T C MIR519B RNA 0.50 TCGA-18-3411-01 19 54401258 54401258 C A PRKCG Missense_Mutation p.P329T 0.09 tolerated(0.44) benign(0.001) TCGA-18-3411-01 19 54848965 54848965 C A LILRA4 Missense_Mutation p.V220L 0.43 tolerated(0.61) possibly_damaging(0.514) TCGA-18-3411-01 19 55086465 55086465 C G LILRA2 Missense_Mutation p.S207C 0.58 deleterious(0) probably_damaging(0.999) TCGA-18-3411-01 19 55710231 55710231 G T PTPRH Silent p.T490T 0.13 TCGA-18-3411-01 19 57327637 57327637 T C PEG3 Missense_Mutation p.S725G 0.29 tolerated(0.19) benign(0.016) TCGA-18-3411-01 19 7125485 7125485 T C INSR Missense_Mutation p.I1023V 0.27 tolerated(0.07) probably_damaging(0.926) TCGA-18-3411-01 19 7675433 7675433 G A CAMSAP3 Missense_Mutation p.A305T 0.21 tolerated(0.55) benign(0.327) TCGA-18-3411-01 19 9065831 9065831 T A MUC16 Silent p.T7205T 0.21 TCGA-18-3411-01 19 9071159 9071159 A T MUC16 Silent p.T5429T 0.22 TCGA-18-3411-01 19 9237355 9237355 G T OR7G3 Missense_Mutation p.S91Y 0.33 tolerated(0.13) possibly_damaging(0.451) TCGA-18-3411-01 1 114184866 114184866 C A MAGI3 Missense_Mutation p.S565Y 0.15 deleterious(0) probably_damaging(0.993) TCGA-18-3411-01 1 114424399 114424399 C T BCL2L15 Missense_Mutation p.G157D 0.39 deleterious(0) probably_damaging(1) TCGA-18-3411-01 1 12854302 12854302 G A PRAMEF1 Missense_Mutation p.G176S 0.15 tolerated(0.22) probably_damaging(0.971) TCGA-18-3411-01 1 152187842 152187842 G C HRNR Missense_Mutation p.S2088C 0.23 unknown(0) TCGA-18-3411-01 1 152281741 152281741 G A FLG Missense_Mutation p.S1874L 0.30 benign(0.307) TCGA-18-3411-01 1 152759781 152759781 C G LCE1E Silent p.S2S 0.09 TCGA-18-3411-01 1 154098875 154098875 C A NUP210L Missense_Mutation p.G417V 0.22 deleterious(0.01) probably_damaging(0.979) TCGA-18-3411-01 1 154098876 154098876 C A NUP210L Nonsense_Mutation p.G417* 0.22 TCGA-18-3411-01 1 154962919 154962919 G A FLAD1 Missense_Mutation p.R490Q 0.13 deleterious(0.04) benign(0.327) TCGA-18-3411-01 1 156507028 156507028 G A IQGAP3 Missense_Mutation p.L1123F 0.58 deleterious(0.01) possibly_damaging(0.873) TCGA-18-3411-01 1 158151308 158151308 C A CD1D Missense_Mutation p.T42K 0.52 deleterious(0.01) benign(0.401) TCGA-18-3411-01 1 158609467 158609467 A G SPTA1 Silent p.L1629L 0.31 TCGA-18-3411-01 1 16458597 16458597 C T EPHA2 Missense_Mutation p.V763M 0.18 deleterious(0) probably_damaging(0.999) TCGA-18-3411-01 1 171303694 171303694 G C FMO4 Silent p.V324V 0.07 TCGA-18-3411-01 1 171303698 171303698 T G FMO4 Missense_Mutation p.F326V 0.06 deleterious(0) probably_damaging(1) TCGA-18-3411-01 1 185270621 185270621 A C IVNS1ABP Silent p.A280A 0.37 TCGA-18-3411-01 1 190195245 190195245 A T BRINP3 Missense_Mutation p.W310R 0.55 deleterious(0.01) probably_damaging(0.997) TCGA-18-3411-01 1 203191413 203191413 C A CHIT1 Missense_Mutation p.G216C 0.35 deleterious(0) probably_damaging(0.998) TCGA-18-3411-01 1 215794028 215794028 A G KCTD3 3'UTR 0.48 TCGA-18-3411-01 1 216262403 216262403 T C USH2A Missense_Mutation p.I1613V 0.09 benign(0.002) TCGA-18-3411-01 1 220179558 220179558 T C EPRS Missense_Mutation p.T614A 0.26 tolerated(0.77) benign(0.001) TCGA-18-3411-01 1 222835412 222835412 C A MIA3 Missense_Mutation p.P1710T 0.14 deleterious(0.01) possibly_damaging(0.663) TCGA-18-3411-01 1 223396739 223396739 G T SUSD4 Missense_Mutation p.S432R 0.61 deleterious(0.04) benign(0.018) TCGA-18-3411-01 1 241031891 241031891 G C RGS7 Missense_Mutation p.P202R 0.06 deleterious(0) probably_damaging(0.998) TCGA-18-3411-01 1 247607428 247607428 A T NLRP3 Nonsense_Mutation p.K942* 0.40 TCGA-18-3411-01 1 248436623 248436623 G A OR2T33 Missense_Mutation p.P165L 0.11 deleterious(0) possibly_damaging(0.833) TCGA-18-3411-01 1 248525863 248525863 G T OR2T4 Missense_Mutation p.K327N 0.45 deleterious(0.02) probably_damaging(0.963) TCGA-18-3411-01 1 36204180 36204180 T C CLSPN Missense_Mutation p.D1145G 0.24 deleterious(0.03) benign(0.088) TCGA-18-3411-01 1 3686367 3686367 G A CCDC27 Silent p.K588K 0.16 TCGA-18-3411-01 1 57602295 57602295 C T DAB1 Missense_Mutation p.R76H 0.20 deleterious(0) probably_damaging(0.987) TCGA-18-3411-01 1 75037053 75037053 C G C1orf173 Missense_Mutation p.E1447D 0.19 tolerated(1) benign(0) TCGA-18-3411-01 1 77752691 77752691 A C AK5 Missense_Mutation p.L42F 0.13 deleterious(0) probably_damaging(0.995) TCGA-18-3411-01 20 17641085 17641085 A C RRBP1 Missense_Mutation p.I23S 0.39 deleterious(0) probably_damaging(0.943) TCGA-18-3411-01 20 20610174 20610174 C T RALGAPA2 Missense_Mutation p.E356K 0.47 deleterious(0.01) benign(0.269) TCGA-18-3411-01 20 23016630 23016630 G A SSTR4 Silent p.V170V 0.22 TCGA-18-3411-01 20 29623188 29623188 G A FRG1B 5'UTR 0.04 TCGA-18-3411-01 20 30745749 30745749 G A TM9SF4 Silent p.R494R 0.19 TCGA-18-3411-01 20 40864878 40864878 G C PTPRT Missense_Mutation p.S778C 0.19 tolerated(0.06) benign(0.339) TCGA-18-3411-01 20 5283148 5283148 C A PROKR2 Missense_Mutation p.E231D 0.49 deleterious(0.01) probably_damaging(0.997) TCGA-18-3411-01 20 54573767 54573767 G T CBLN4 Missense_Mutation p.A151E 0.63 deleterious(0) probably_damaging(0.999) TCGA-18-3411-01 20 6078203 6078203 C T FERMT1 Missense_Mutation p.E309K 0.21 deleterious(0) probably_damaging(0.992) TCGA-18-3411-01 20 855022 855022 C A ANGPT4 Missense_Mutation p.R419L 0.41 deleterious(0.04) benign(0.036) TCGA-18-3411-01 21 11038763 11038763 T C BAGE2 RNA 0.14 TCGA-18-3411-01 21 33044507 33044507 C T SCAF4 Silent p.P883P 0.70 TCGA-18-3411-01 21 33058012 33058012 C A SCAF4 Missense_Mutation p.G693V 0.61 unknown(0) TCGA-18-3411-01 21 34926741 34926741 G A SON Missense_Mutation p.R1735K 0.18 benign(0.067) TCGA-18-3411-01 21 47571482 47571482 C G FTCD Missense_Mutation p.G209A 0.61 tolerated(0.15) benign(0.262) TCGA-18-3411-01 22 21330039 21330039 A G AIFM3 Missense_Mutation p.Y260C 0.13 deleterious(0.03) possibly_damaging(0.823) TCGA-18-3411-01 22 24943946 24943946 A C GUCD1 Missense_Mutation p.M75R 0.43 deleterious(0.03) possibly_damaging(0.657) TCGA-18-3411-01 22 29706908 29706908 G C GAS2L1 Silent p.G310G 0.47 TCGA-18-3411-01 22 29885319 29885319 G C NEFH Missense_Mutation p.A564P 0.12 tolerated(0.15) unknown(0) TCGA-18-3411-01 22 33733695 33733695 G T LARGE Missense_Mutation p.D408E 0.33 deleterious(0.02) possibly_damaging(0.862) TCGA-18-3411-01 22 43614411 43614411 C A SCUBE1 Missense_Mutation p.A581S 0.37 tolerated(0.25) benign(0.2) TCGA-18-3411-01 22 50682676 50682676 G C TUBGCP6 Silent p.L71L 0.09 TCGA-18-3411-01 2 101010038 101010038 G A CHST10 Missense_Mutation p.P247L 0.12 deleterious(0.03) benign(0.041) TCGA-18-3411-01 2 109300362 109300362 C G LIMS1 Missense_Mutation p.D357E 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-18-3411-01 2 130865629 130865629 T C POTEF Missense_Mutation p.Y360C 0.47 tolerated_low_confidence(0.06) benign(0.281) TCGA-18-3411-01 2 130953819 130953819 A G TUBA3E Silent p.G43G 0.12 TCGA-18-3411-01 2 158974404 158974404 G C UPP2 Silent p.R193R 0.12 TCGA-18-3411-01 2 163082006 163082006 C A FAP Missense_Mutation p.S91I 0.17 deleterious(0.02) possibly_damaging(0.481) TCGA-18-3411-01 2 163212953 163212953 A T GCA Missense_Mutation p.S90C 0.73 deleterious(0.03) possibly_damaging(0.546) TCGA-18-3411-01 2 166892733 166892733 C A SCN1A Missense_Mutation p.G1085V 0.68 tolerated(0.13) probably_damaging(0.943) TCGA-18-3411-01 2 170676070 170676070 C T METTL5 Splice_Site p.X163_splice 0.12 TCGA-18-3411-01 2 178098945 178098945 G C NFE2L2 Missense_Mutation p.R34G 0.59 deleterious(0) probably_damaging(1) TCGA-18-3411-01 2 17896303 17896303 G A SMC6 Missense_Mutation p.L519F 0.54 tolerated(0.27) benign(0.026) TCGA-18-3411-01 2 179582667 179582667 C A TTN Intron 0.61 TCGA-18-3411-01 2 179592919 179592919 T G TTN Missense_Mutation p.E6544D 0.26 TCGA-18-3411-01 2 179610662 179610662 T G TTN Intron 0.30 TCGA-18-3411-01 2 183387000 183387000 C A PDE1A Intron 0.61 TCGA-18-3411-01 2 187368929 187368929 A G ZC3H15 Silent p.L235L 0.60 TCGA-18-3411-01 2 192815124 192815124 G T TMEFF2 Silent p.P346P 0.19 TCGA-18-3411-01 2 207011634 207011634 C T NDUFS1 Missense_Mutation p.E258K 0.14 deleterious(0) probably_damaging(0.996) TCGA-18-3411-01 2 21227276 21227276 G A APOB Silent p.T3984T 0.13 TCGA-18-3411-01 2 219895545 219895545 G A CCDC108 Nonsense_Mutation p.Q343* 0.38 TCGA-18-3411-01 2 223085966 223085966 A G PAX3 Silent p.S311S 0.28 TCGA-18-3411-01 2 223158505 223158505 T A PAX3 Intron 0.16 TCGA-18-3411-01 2 225638050 225638050 G C DOCK10 Missense_Mutation p.P2010A 0.56 deleterious(0) benign(0.077) TCGA-18-3411-01 2 228846483 228846483 G T SPHKAP Missense_Mutation p.Q1685K 0.36 tolerated(0.79) benign(0.02) TCGA-18-3411-01 2 26257592 26257592 A T RAB10 Missense_Mutation p.I39F 0.15 deleterious(0.01) possibly_damaging(0.591) TCGA-18-3411-01 2 27481650 27481650 C A SLC30A3 Missense_Mutation p.C83F 0.51 deleterious(0) probably_damaging(0.996) TCGA-18-3411-01 2 29259412 29259412 T C FAM179A Silent p.F808F 0.57 TCGA-18-3411-01 2 29296932 29296932 T G C2orf71 Silent p.R66R 0.34 TCGA-18-3411-01 2 54175569 54175569 A G PSME4 Silent p.N163N 0.13 TCGA-18-3411-01 2 54882236 54882236 A G SPTBN1 Missense_Mutation p.N1951S 0.48 tolerated(0.14) benign(0.003) TCGA-18-3411-01 2 80136767 80136767 G A CTNNA2 Silent p.R300R 0.13 TCGA-18-3411-01 2 86683959 86683959 T A KDM3A Missense_Mutation p.L238Q 0.49 deleterious(0.04) probably_damaging(0.999) TCGA-18-3411-01 2 89399590 89399590 C A IGKV1-16 Missense_Mutation p.G38V 0.52 deleterious(0) probably_damaging(0.945) TCGA-18-3411-01 2 89399591 89399591 C T IGKV1-16 Missense_Mutation p.G38R 0.53 deleterious(0.02) possibly_damaging(0.537) TCGA-18-3411-01 2 96781011 96781011 G A ADRA2B Missense_Mutation p.P293L 0.27 tolerated(0.24) benign(0.003) TCGA-18-3411-01 2 97492658 97492658 T G CNNM3 Missense_Mutation p.D486E 0.11 tolerated(0.5) benign(0.003) TCGA-18-3411-01 3 108300321 108300321 C A KIAA1524 Nonsense_Mutation p.G164* 0.39 TCGA-18-3411-01 3 119367422 119367422 G A POPDC2 Missense_Mutation p.L232F 0.16 deleterious(0) probably_damaging(0.998) TCGA-18-3411-01 3 121417220 121417220 T C GOLGB1 Missense_Mutation p.D717G 0.43 benign(0.036) TCGA-18-3411-01 3 123382998 123382998 C T MYLK Silent p.E1313E 0.15 TCGA-18-3411-01 3 128060451 128060451 G A EEFSEC Missense_Mutation p.V388M 0.30 tolerated(0.1) benign(0.003) TCGA-18-3411-01 3 140281693 140281693 C T CLSTN2 Silent p.H751H 0.17 TCGA-18-3411-01 3 142681705 142681705 G A PAQR9 Silent p.Y158Y 0.26 TCGA-18-3411-01 3 167184891 167184891 T C SERPINI2 Missense_Mutation p.K144E 0.17 tolerated(0.57) benign(0.331) TCGA-18-3411-01 3 182679132 182679132 T C DCUN1D1 Missense_Mutation p.I134M 0.23 tolerated(0.06) benign(0.052) TCGA-18-3411-01 3 184298901 184298901 A G EPHB3 Missense_Mutation p.K894E 0.27 deleterious(0) probably_damaging(0.955) TCGA-18-3411-01 3 184612617 184612617 G T VPS8 Missense_Mutation p.M636I 0.26 tolerated(0.12) benign(0.401) TCGA-18-3411-01 3 195511964 195511964 C A MUC4 Missense_Mutation p.V2163F 0.20 unknown(0) TCGA-18-3411-01 3 195513049 195513049 G T MUC4 Missense_Mutation p.A1801E 0.08 possibly_damaging(0.51) TCGA-18-3411-01 3 31725157 31725157 G C OSBPL10 Silent p.G565G 0.79 TCGA-18-3411-01 3 38263138 38263138 T C OXSR1 Missense_Mutation p.V187A 0.20 deleterious(0.01) probably_damaging(0.966) TCGA-18-3411-01 3 38888793 38888793 T C SCN11A Missense_Mutation p.I1590V 0.23 deleterious(0.05) benign(0.128) TCGA-18-3411-01 3 52328291 52328291 T A GLYCTK 3'Flank 0.12 TCGA-18-3411-01 3 67054263 67054263 T G KBTBD8 Missense_Mutation p.F291C 0.24 deleterious(0.01) probably_damaging(0.912) TCGA-18-3411-01 3 79174687 79174687 G T ROBO1 Missense_Mutation p.P31T 0.60 tolerated_low_confidence(0.63) benign(0.001) TCGA-18-3411-01 3 88190171 88190171 C G ZNF654 Missense_Mutation p.L571V 0.23 deleterious(0) probably_damaging(0.987) TCGA-18-3411-01 4 119952527 119952527 C A SYNPO2 Missense_Mutation p.P866Q 0.13 deleterious(0) probably_damaging(0.996) TCGA-18-3411-01 4 164247530 164247530 C A NPY1R Silent p.L59L 0.56 TCGA-18-3411-01 4 175897894 175897894 A T ADAM29 Missense_Mutation p.E406D 0.11 deleterious(0.04) possibly_damaging(0.72) TCGA-18-3411-01 4 25677955 25677955 C T SLC34A2 Missense_Mutation p.R553W 0.23 tolerated(0.08) benign(0) TCGA-18-3411-01 4 36093640 36093640 G A ARAP2 Missense_Mutation p.R1430W 0.29 deleterious(0.01) possibly_damaging(0.654) TCGA-18-3411-01 4 40245213 40245213 G A RHOH Silent p.R69R 0.15 TCGA-18-3411-01 4 41985087 41985087 G C DCAF4L1 3'UTR 0.36 TCGA-18-3411-01 4 42965024 42965024 G A GRXCR1 Missense_Mutation p.R167H 0.22 tolerated(0.14) probably_damaging(0.999) TCGA-18-3411-01 4 62542559 62542559 C A LPHN3 Silent p.T95T 0.34 TCGA-18-3411-01 4 69100335 69100335 A T TMPRSS11B Missense_Mutation p.N105K 0.49 tolerated(0.28) benign(0.062) TCGA-18-3411-01 4 71201005 71201005 C A CABS1 Silent p.T83T 0.24 TCGA-18-3411-01 4 76911921 76911921 G C SDAD1 Missense_Mutation p.P25R 0.42 tolerated(0.39) benign(0.051) TCGA-18-3411-01 5 13721111 13721111 T C DNAH5 Missense_Mutation p.N4093D 0.12 possibly_damaging(0.621) TCGA-18-3411-01 5 13913947 13913947 C T DNAH5 Missense_Mutation p.A481T 0.12 benign(0.023) TCGA-18-3411-01 5 153409093 153409093 C A FAM114A2 Missense_Mutation p.A151S 0.42 tolerated(0.89) benign(0.088) TCGA-18-3411-01 5 160097667 160097667 G T ATP10B Missense_Mutation p.Q160K 0.57 tolerated(1) benign(0.002) TCGA-18-3411-01 5 19747097 19747097 G C CDH18 Missense_Mutation p.F159L 0.09 deleterious(0) probably_damaging(0.958) TCGA-18-3411-01 5 24488018 24488018 G T CDH10 Missense_Mutation p.N707K 0.17 tolerated(0.07) benign(0.188) TCGA-18-3411-01 5 24488077 24488077 G T CDH10 Silent p.R688R 0.59 TCGA-18-3411-01 5 24509858 24509858 C T CDH10 Missense_Mutation p.R358H 0.52 tolerated(0.05) benign(0.009) TCGA-18-3411-01 5 32074686 32074686 A C PDZD2 Missense_Mutation p.R1158S 0.59 deleterious(0.01) benign(0.013) TCGA-18-3411-01 5 35876119 35876119 T A IL7R Missense_Mutation p.L304Q 0.09 tolerated(0.14) probably_damaging(0.963) TCGA-18-3411-01 5 36122985 36122985 G T LMBRD2 Missense_Mutation p.P301T 0.14 tolerated(0.06) probably_damaging(0.99) TCGA-18-3411-01 5 36226629 36226629 T A NADK2 Missense_Mutation p.R142S 0.58 tolerated(0.4) benign(0.029) TCGA-18-3411-01 5 37000926 37000926 G A NIPBL Silent p.R1170R 0.63 TCGA-18-3411-01 5 39202039 39202039 G A FYB Missense_Mutation p.P352S 0.08 deleterious(0) probably_damaging(0.999) TCGA-18-3411-01 5 63257447 63257447 T A HTR1A Missense_Mutation p.S34C 0.24 deleterious(0.05) benign(0.012) TCGA-18-3411-01 5 70805959 70805959 G A BDP1 Missense_Mutation p.A1014T 0.17 tolerated(0.12) benign(0.2) TCGA-18-3411-01 5 796129 796129 A T ZDHHC11 3'UTR 0.27 TCGA-18-3411-01 5 88119587 88119587 G C MEF2C Missense_Mutation p.Q7E 0.71 deleterious(0) benign(0.001) TCGA-18-3411-01 6 107475735 107475735 G C PDSS2 3'UTR 0.45 TCGA-18-3411-01 6 108041733 108041733 G C SCML4 Intron 0.58 TCGA-18-3411-01 6 108375753 108375753 T A OSTM1 Missense_Mutation p.T186S 0.35 deleterious(0.04) probably_damaging(0.998) TCGA-18-3411-01 6 117632279 117632279 A T ROS1 Missense_Mutation p.F2046Y 0.46 tolerated(0.48) possibly_damaging(0.873) TCGA-18-3411-01 6 123318878 123318878 A G CLVS2 5'UTR 0.49 TCGA-18-3411-01 6 132874419 132874419 C T TAAR8 Silent p.G196G 0.25 TCGA-18-3411-01 6 135290373 135290373 C A HBS1L Intron 0.32 TCGA-18-3411-01 6 135784438 135784438 C T AHI1 Silent p.L252L 0.40 TCGA-18-3411-01 6 147685233 147685233 A G STXBP5 Silent p.A1004A 0.32 TCGA-18-3411-01 6 152605154 152605154 T C SYNE1 Missense_Mutation p.T6056A 0.20 probably_damaging(0.996) TCGA-18-3411-01 6 27840015 27840015 G A HIST1H3I Missense_Mutation p.R27C 0.22 tolerated_low_confidence(0.06) benign(0.04) TCGA-18-3411-01 6 33255475 33255475 C T WDR46 Missense_Mutation p.R215H 0.42 tolerated(0.07) benign(0.013) TCGA-18-3411-01 6 33262480 33262480 G A RGL2 Silent p.S446S 0.26 TCGA-18-3411-01 6 34850791 34850791 C T TAF11 Missense_Mutation p.A80T 0.41 deleterious(0.03) benign(0.006) TCGA-18-3411-01 6 43471417 43471417 C T TJAP1 Silent p.S184S 0.11 TCGA-18-3411-01 6 47650109 47650109 T A GPR111 Missense_Mutation p.L605Q 0.47 deleterious(0) probably_damaging(0.993) TCGA-18-3411-01 6 51640631 51640631 T G PKHD1 Silent p.G2843G 0.12 TCGA-18-3411-01 6 74104595 74104595 G C DDX43 5'UTR 0.44 TCGA-18-3411-01 6 83818789 83818789 T C DOPEY1 Missense_Mutation p.Y161H 0.15 deleterious(0) probably_damaging(0.932) TCGA-18-3411-01 6 88854625 88854625 G T CNR1 Silent p.S123S 0.32 TCGA-18-3411-01 6 94120471 94120471 C G EPHA7 Missense_Mutation p.A194P 0.28 deleterious(0) probably_damaging(1) TCGA-18-3411-01 7 100390148 100390148 C T ZAN Missense_Mutation p.R2611W 0.23 unknown(0) TCGA-18-3411-01 7 102016291 102016291 G T PRKRIP1 5'UTR 0.40 TCGA-18-3411-01 7 102738999 102738999 G A ARMC10 Silent p.%3D 0.21 TCGA-18-3411-01 7 106545676 106545676 C T PIK3CG Silent p.I1051I 0.08 TCGA-18-3411-01 7 117432706 117432706 A G CTTNBP2 Missense_Mutation p.S182P 0.07 deleterious(0.02) probably_damaging(0.98) TCGA-18-3411-01 7 120593375 120593375 G C ING3 Missense_Mutation p.E40Q 0.12 deleterious(0.02) possibly_damaging(0.457) TCGA-18-3411-01 7 122635112 122635112 G A TAS2R16 Silent p.L193L 0.22 TCGA-18-3411-01 7 135073610 135073610 G T CNOT4 Intron 0.16 TCGA-18-3411-01 7 136700851 136700851 T C CHRM2 Silent p.C413C 0.20 TCGA-18-3411-01 7 142139816 142139816 G A TRBV6-7 3'Flank 0.18 TCGA-18-3411-01 7 142627186 142627186 C T TRPV5 Missense_Mutation p.V106I 0.13 tolerated(0.62) benign(0.141) TCGA-18-3411-01 7 142836736 142836736 T A PIP 3'UTR 0.17 TCGA-18-3411-01 7 150921189 150921189 G A ABCF2 Silent p.L127L 0.51 TCGA-18-3411-01 7 150921902 150921902 G A ABCF2 Silent p.N109N 0.44 TCGA-18-3411-01 7 17915137 17915137 A T SNX13 Silent p.R210R 0.33 TCGA-18-3411-01 7 2259027 2259027 C T MAD1L1 Missense_Mutation p.R179Q 0.25 tolerated(1) benign(0.002) TCGA-18-3411-01 7 30793552 30793552 C G INMT Missense_Mutation p.N120K 0.14 deleterious(0.04) benign(0.076) TCGA-18-3411-01 7 31142865 31142865 C A ADCYAP1R1 Missense_Mutation p.S382Y 0.35 deleterious(0) probably_damaging(1) TCGA-18-3411-01 7 57187734 57187734 C A ZNF479 Missense_Mutation p.R463I 0.37 deleterious(0.01) benign(0.21) TCGA-18-3411-01 7 64439401 64439401 T A ZNF117 Missense_Mutation p.H183L 0.10 deleterious(0) possibly_damaging(0.779) TCGA-18-3411-01 7 64863284 64863284 G A ZNF92 Nonsense_Mutation p.W86* 0.10 TCGA-18-3411-01 7 6785819 6785819 G T PMS2CL Intron 0.70 TCGA-18-3411-01 7 72400567 72400567 C G POM121 Missense_Mutation p.T133R 0.13 deleterious(0) probably_damaging(0.939) TCGA-18-3411-01 7 73969722 73969722 G C GTF2IRD1 Intron 0.16 TCGA-18-3411-01 7 81591298 81591298 G A CACNA2D1 Nonsense_Mutation p.Q960* 0.14 TCGA-18-3411-01 7 83037796 83037796 T C SEMA3E Silent p.E186E 0.33 TCGA-18-3411-01 7 89854850 89854850 T A STEAP2 Missense_Mutation p.W152R 0.20 deleterious(0) possibly_damaging(0.585) TCGA-18-3411-01 7 92098142 92098142 G A ERVW-1 Silent p.T518T 0.24 TCGA-18-3411-01 7 94038087 94038087 C T COL1A2 Silent p.P248P 0.33 TCGA-18-3411-01 8 101719181 101719181 G C PABPC1 Missense_Mutation p.P461A 0.11 tolerated(0.26) benign(0.002) TCGA-18-3411-01 8 110461578 110461578 G - PKHD1L1 Frame_Shift_Del p.G2014Vfs*4 0.34 TCGA-18-3411-01 8 110495260 110495260 T C PKHD1L1 Missense_Mutation p.Y3168H 0.40 deleterious(0.02) probably_damaging(0.995) TCGA-18-3411-01 8 133673830 133673830 A G LRRC6 Silent p.C18C 0.25 TCGA-18-3411-01 8 142228949 142228949 G A SLC45A4 Missense_Mutation p.R213C 0.40 deleterious(0.01) benign(0.145) TCGA-18-3411-01 8 145634543 145634543 G T CPSF1 5'UTR 0.27 TCGA-18-3411-01 8 19214747 19214747 A G SH2D4A Missense_Mutation p.M183V 0.63 tolerated(0.08) benign(0.391) TCGA-18-3411-01 8 22368619 22368619 C T PPP3CC Nonsense_Mutation p.Q169* 0.09 TCGA-18-3411-01 8 32599566 32599566 G T NRG1 Intron 0.70 TCGA-18-3411-01 8 42196567 42196567 C T POLB Silent p.I33I 0.13 TCGA-18-3411-01 8 42729125 42729125 T C RNF170 Silent p.P54P 0.12 TCGA-18-3411-01 8 43033220 43033220 T C HGSNAT Silent p.F285F 0.50 TCGA-18-3411-01 8 52320691 52320691 C A PXDNL Missense_Mutation p.V1165F 0.15 deleterious(0.03) benign(0.033) TCGA-18-3411-01 8 54142385 54142385 G A OPRK1 Silent p.V205V 0.10 TCGA-18-3411-01 8 77775400 77775400 C A ZFHX4 Silent p.L3150L 0.50 TCGA-18-3411-01 8 94717142 94717142 C T FAM92A1 Silent p.D112D 0.29 TCGA-18-3411-01 9 102626002 102626002 C A NR4A3 Silent p.P589P 0.38 TCGA-18-3411-01 9 107289280 107289280 T A OR13C4 Missense_Mutation p.I71F 0.14 deleterious(0) probably_damaging(0.998) TCGA-18-3411-01 9 130854346 130854346 G T SLC25A25 Intron 0.67 TCGA-18-3411-01 9 131374420 131374420 G A SPTAN1 Silent p.Q1646Q 0.19 TCGA-18-3411-01 9 137328331 137328331 C T RXRA Silent p.L420L 0.67 TCGA-18-3411-01 9 18777190 18777190 C T ADAMTSL1 Missense_Mutation p.P988L 0.31 tolerated(0.34) benign(0) TCGA-18-3411-01 9 78794566 78794566 A C PCSK5 Missense_Mutation p.H652P 0.16 deleterious(0) probably_damaging(0.999) TCGA-18-3411-01 X 117959988 117959988 T A ZCCHC12 Missense_Mutation p.C261S 0.50 tolerated(0.11) benign(0.003) TCGA-18-3411-01 X 145076364 145076364 G T MIR888 RNA 0.76 TCGA-18-3411-01 X 19025356 19025356 G T GPR64 Missense_Mutation p.S562R 0.62 tolerated(0.09) benign(0.197) TCGA-18-3411-01 X 2406850 2406853 AGCC - ZBED1 Frame_Shift_Del p.A637Pfs*78 0.48 TCGA-18-3411-01 X 26212607 26212607 C A MAGEB6 Missense_Mutation p.S215Y 0.44 deleterious(0) possibly_damaging(0.697) TCGA-18-3411-01 X 30260685 30260685 G T MAGEB4 Nonsense_Mutation p.E145* 0.44 TCGA-18-3411-01 X 44922694 44922694 C T KDM6A Nonsense_Mutation p.R519* 0.57 TCGA-18-3411-01 X 62570653 62570653 C T SPIN4 Missense_Mutation p.A16T 0.39 tolerated(0.09) benign(0.163) TCGA-18-3411-01 X 69502420 69502420 C G RAB41 Missense_Mutation p.N53K 0.59 deleterious(0) benign(0.015) TCGA-18-3412-01 10 24762528 24762534 AGCCTCA - KIAA1217 Frame_Shift_Del p.A407Pfs*73 0.24 TCGA-18-3412-01 11 119103295 119103295 A G CBL Silent p.E111E 0.36 TCGA-18-3412-01 11 128628202 128628202 G A FLI1 Missense_Mutation p.D71N 0.32 tolerated(0.5) possibly_damaging(0.579) TCGA-18-3412-01 11 129724601 129724601 T C TMEM45B Missense_Mutation p.M92T 0.29 deleterious(0) probably_damaging(0.986) TCGA-18-3412-01 11 22239812 22239812 G T ANO5 Missense_Mutation p.L53F 0.46 deleterious(0.03) probably_damaging(0.998) TCGA-18-3412-01 11 4104567 4104567 G C STIM1 Missense_Mutation p.G438A 0.28 deleterious(0.01) benign(0.383) TCGA-18-3412-01 11 4624558 4624558 C T TRIM68 Missense_Mutation p.E147K 0.37 tolerated(0.58) benign(0.003) TCGA-18-3412-01 11 55339800 55339800 T A OR4C16 Nonsense_Mutation p.L66* 0.26 TCGA-18-3412-01 11 55406117 55406117 G C OR4P4 Missense_Mutation p.C95S 0.40 deleterious(0) probably_damaging(0.938) TCGA-18-3412-01 11 58274946 58274946 G T OR5B21 Silent p.I211I 0.39 TCGA-18-3412-01 11 62291567 62291567 T G AHNAK Missense_Mutation p.E3441A 0.38 probably_damaging(0.992) TCGA-18-3412-01 11 6815982 6815982 G T OR6A2 Missense_Mutation p.P320T 0.31 tolerated_low_confidence(0.14) benign(0) TCGA-18-3412-01 11 7335113 7335113 G C SYT9 Missense_Mutation p.D329H 0.30 deleterious(0.03) possibly_damaging(0.681) TCGA-18-3412-01 11 74987912 74987912 G T ARRB1 Nonsense_Mutation p.Y249* 0.43 TCGA-18-3412-01 12 129442181 129442181 A T GLT1D1 Missense_Mutation p.N211I 0.33 tolerated(0.11) benign(0.002) TCGA-18-3412-01 12 56580987 56580987 G A SMARCC2 Missense_Mutation p.P72L 0.22 deleterious(0) possibly_damaging(0.726) TCGA-18-3412-01 12 7519883 7519883 C T CD163L1 Missense_Mutation p.E1410K 0.22 deleterious(0.03) benign(0.338) TCGA-18-3412-01 12 7985369 7985369 G T SLC2A14 Silent p.I43I 0.44 TCGA-18-3412-01 13 38160416 38160416 G A POSTN Missense_Mutation p.A252V 0.23 tolerated(0.1) benign(0.113) TCGA-18-3412-01 13 39587739 39587739 G A PROSER1 Silent p.S550S 0.24 TCGA-18-3412-01 13 41517101 41517101 C T ELF1 Missense_Mutation p.G265R 0.28 deleterious(0) probably_damaging(1) TCGA-18-3412-01 13 52693485 52693485 T C NEK5 Missense_Mutation p.N62D 0.45 deleterious(0) probably_damaging(1) TCGA-18-3412-01 13 86369450 86369450 A G SLITRK6 Silent p.R398R 0.27 TCGA-18-3412-01 14 102474667 102474667 C A DYNC1H1 Nonsense_Mutation p.Y1990* 0.23 TCGA-18-3412-01 14 106321604 106321604 C T IGHM Silent p.A210A 0.53 TCGA-18-3412-01 14 20444486 20444486 T A OR4K15 Missense_Mutation p.V270E 0.46 deleterious(0) probably_damaging(0.995) TCGA-18-3412-01 14 33291404 33291404 A C AKAP6 Missense_Mutation p.H1462P 0.16 deleterious_low_confidence(0.04) possibly_damaging(0.828) TCGA-18-3412-01 14 65207982 65207982 A T PLEKHG3 Missense_Mutation p.M527L 0.43 tolerated(0.13) benign(0.026) TCGA-18-3412-01 15 22332755 22332755 T A RP11-69H14.6 RNA 0.32 TCGA-18-3412-01 15 26812774 26812774 C A GABRB3 Silent p.V263V 0.28 TCGA-18-3412-01 15 29398955 29398955 A T APBA2 Missense_Mutation p.Q617L 0.52 deleterious(0) probably_damaging(0.986) TCGA-18-3412-01 15 56756394 56756394 C G MNS1 Missense_Mutation p.D19H 0.31 deleterious(0.02) possibly_damaging(0.625) TCGA-18-3412-01 15 79750567 79750567 G A KIAA1024 Missense_Mutation p.S693N 0.34 deleterious(0.01) benign(0.185) TCGA-18-3412-01 15 82575397 82575397 C G FAM154B Silent p.A397A 0.27 TCGA-18-3412-01 15 85478700 85478700 G A SLC28A1 Missense_Mutation p.R511H 0.11 deleterious(0.01) probably_damaging(1) TCGA-18-3412-01 15 89056181 89056181 C G DET1 3'UTR 0.48 TCGA-18-3412-01 16 3777896 3777896 G T CREBBP Missense_Mutation p.H2384Q 0.17 unknown(0) TCGA-18-3412-01 16 5053517 5053517 C T SEC14L5 Silent p.T415T 0.59 TCGA-18-3412-01 16 77401602 77401602 G C ADAMTS18 Missense_Mutation p.R172G 0.61 tolerated(0.23) benign(0.001) TCGA-18-3412-01 16 814042 814042 C T MSLN Missense_Mutation p.L67F 0.41 tolerated(0.32) possibly_damaging(0.892) TCGA-18-3412-01 17 26687549 26687549 C G TMEM199 Intron 0.18 TCGA-18-3412-01 17 29684312 29684312 A T NF1 Missense_Mutation p.D2632V 0.50 deleterious(0) probably_damaging(0.994) TCGA-18-3412-01 17 37565935 37565935 C T MED1 Missense_Mutation p.G847R 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.601) TCGA-18-3412-01 17 41931189 41931189 T A CD300LG Missense_Mutation p.Y166N 0.59 tolerated(0.06) benign(0.046) TCGA-18-3412-01 17 48561880 48561880 G T RSAD1 Missense_Mutation p.E395D 0.56 tolerated(0.39) benign(0.008) TCGA-18-3412-01 17 63221324 63221324 C A RGS9 Missense_Mutation p.Q538K 0.11 tolerated_low_confidence(0.31) benign(0.005) TCGA-18-3412-01 17 7577568 7577568 C G TP53 Missense_Mutation p.C238S 0.79 deleterious(0) probably_damaging(1) TCGA-18-3412-01 17 8133897 8133897 A G CTC1 Silent p.S914S 0.68 TCGA-18-3412-01 18 12449639 12449639 A G SPIRE1 Nonstop_Mutation p.*757Rext*20 0.39 TCGA-18-3412-01 18 28598040 28598040 T A DSC3 Silent p.V420V 0.23 TCGA-18-3412-01 19 17759368 17759368 G A UNC13A Missense_Mutation p.T563M 0.17 deleterious(0) probably_damaging(0.975) TCGA-18-3412-01 19 18555600 18555600 C T ELL Missense_Mutation p.A610T 0.54 deleterious(0.01) possibly_damaging(0.893) TCGA-18-3412-01 19 37853645 37853645 G C HKR1 Silent p.L316L 0.05 TCGA-18-3412-01 19 39090611 39090611 C G MAP4K1 Silent p.R541R 0.14 TCGA-18-3412-01 19 39090744 39090744 C G MAP4K1 Silent p.R527R 0.16 TCGA-18-3412-01 19 39090770 39090770 C G MAP4K1 Missense_Mutation p.E519Q 0.14 deleterious(0) probably_damaging(0.998) TCGA-18-3412-01 19 46915941 46915941 G C CCDC8 Missense_Mutation p.Q43E 0.77 benign(0.271) TCGA-18-3412-01 19 5591806 5591806 T C SAFB2 Splice_Site p.X783_splice 0.20 TCGA-18-3412-01 19 56467436 56467436 A T NLRP8 Missense_Mutation p.K671M 0.80 tolerated(0.07) benign(0.15) TCGA-18-3412-01 19 58385155 58385155 G A ZNF814 Missense_Mutation p.L535F 0.23 tolerated(0.05) probably_damaging(0.996) TCGA-18-3412-01 1 111060834 111060834 C T KCNA10 Silent p.L192L 0.69 TCGA-18-3412-01 1 147095760 147095760 C T BCL9 Missense_Mutation p.S1094F 0.25 deleterious(0) probably_damaging(0.974) TCGA-18-3412-01 1 156913790 156913790 T A ARHGEF11 Missense_Mutation p.S1058C 0.47 deleterious(0.02) benign(0.322) TCGA-18-3412-01 1 158687691 158687691 C A OR6K3 Missense_Mutation p.W72L 0.45 deleterious(0) possibly_damaging(0.703) TCGA-18-3412-01 1 159505361 159505361 C G OR10J5 Missense_Mutation p.C146S 0.41 tolerated(0.73) benign(0.023) TCGA-18-3412-01 1 186106962 186106962 T C HMCN1 Silent p.L4594L 0.44 TCGA-18-3412-01 1 193150745 193150745 C G B3GALT2 5'UTR 0.25 TCGA-18-3412-01 1 196876445 196876445 G A CFHR4 Splice_Site p.X205_splice 0.14 TCGA-18-3412-01 1 206711563 206711563 G C RASSF5 Missense_Mutation p.E174Q 0.16 tolerated(0.42) benign(0.001) TCGA-18-3412-01 1 24083610 24083610 T C TCEB3 Missense_Mutation p.V777A 0.83 tolerated(0.41) benign(0.008) TCGA-18-3412-01 1 248085236 248085236 G T OR2T8 Missense_Mutation p.C306F 0.30 deleterious(0.03) benign(0.127) TCGA-18-3412-01 1 40530017 40530017 T C CAP1 Missense_Mutation p.I138T 0.78 deleterious(0) benign(0.278) TCGA-18-3412-01 1 46099321 46099321 T A GPBP1L1 Splice_Site p.X296_splice 0.84 TCGA-18-3412-01 1 57140174 57140174 G A PRKAA2 Missense_Mutation p.R72H 0.33 deleterious(0.01) probably_damaging(0.966) TCGA-18-3412-01 1 62677141 62677141 G A L1TD1 3'UTR 0.25 TCGA-18-3412-01 1 82456102 82456102 C A LPHN2 Missense_Mutation p.T1162K 0.08 deleterious(0.01) benign(0.156) TCGA-18-3412-01 1 8390475 8390475 C T SLC45A1 Missense_Mutation p.L308F 0.38 tolerated(0.08) probably_damaging(0.948) TCGA-18-3412-01 20 13090814 13090814 A G SPTLC3 Silent p.R294R 0.30 TCGA-18-3412-01 20 1584478 1584478 C A SIRPB1 Intron 0.60 TCGA-18-3412-01 20 48600418 48600418 C T SNAI1 Missense_Mutation p.P47L 0.40 deleterious(0.01) possibly_damaging(0.677) TCGA-18-3412-01 21 46705659 46705659 C G POFUT2 Missense_Mutation p.E106Q 0.37 tolerated(0.42) benign(0.251) TCGA-18-3412-01 22 16449041 16449041 G T OR11H1 Missense_Mutation p.T255N 0.58 deleterious(0) probably_damaging(0.999) TCGA-18-3412-01 22 24434905 24434905 G A CABIN1 Missense_Mutation p.R69Q 0.52 tolerated(0.09) probably_damaging(0.99) TCGA-18-3412-01 22 38211693 38211693 C T GCAT Missense_Mutation p.P306S 0.22 deleterious(0.04) benign(0.008) TCGA-18-3412-01 22 40660695 40660695 C G TNRC6B Nonsense_Mutation p.S154* 0.14 TCGA-18-3412-01 2 102632492 102632492 C T IL1R2 Silent p.D164D 0.22 TCGA-18-3412-01 2 14774177 14774177 A T FAM84A Missense_Mutation p.E25V 0.19 deleterious(0) probably_damaging(0.987) TCGA-18-3412-01 2 1546297 1546297 G A TPO 3'UTR 0.13 TCGA-18-3412-01 2 166532891 166532891 G A CSRNP3 Missense_Mutation p.D160N 0.18 deleterious(0) probably_damaging(0.995) TCGA-18-3412-01 2 168114459 168114459 T A XIRP2 3'UTR 0.53 TCGA-18-3412-01 2 175664914 175664914 G A CHN1 Missense_Mutation p.A437V 0.18 tolerated(0.22) benign(0.433) TCGA-18-3412-01 2 187709452 187709452 T A ZSWIM2 Missense_Mutation p.N92I 0.45 deleterious(0) benign(0.244) TCGA-18-3412-01 2 204032030 204032030 C T NBEAL1 Missense_Mutation p.L1953F 0.23 deleterious(0) possibly_damaging(0.659) TCGA-18-3412-01 2 216247035 216247035 C T FN1 Missense_Mutation p.M1688I 0.14 tolerated(0.28) benign(0.015) TCGA-18-3412-01 2 227920724 227920725 - T COL4A4 Frame_Shift_Ins p.G885Rfs*12 0.31 TCGA-18-3412-01 2 26806756 26806756 C A CIB4 Missense_Mutation p.E113D 0.44 tolerated(1) benign(0.216) TCGA-18-3412-01 2 55812196 55812196 C A SMEK2 Missense_Mutation p.Q408H 0.22 deleterious(0.02) benign(0.032) TCGA-18-3412-01 3 130282213 130282213 C A COL6A6 Silent p.P122P 0.38 TCGA-18-3412-01 3 134851709 134851709 G T EPHB1 Missense_Mutation p.R372L 0.59 tolerated(0.23) probably_damaging(0.944) TCGA-18-3412-01 3 150301010 150301010 G A EIF2A Silent p.L550L 0.10 TCGA-18-3412-01 3 164792369 164792369 C A SI Missense_Mutation p.D69Y 0.19 deleterious(0.05) possibly_damaging(0.649) TCGA-18-3412-01 3 165504037 165504037 T C BCHE Missense_Mutation p.K527R 0.33 tolerated(0.22) benign(0.011) TCGA-18-3412-01 3 183818359 183818359 A C HTR3E Missense_Mutation p.K67Q 0.10 tolerated(0.06) benign(0.311) TCGA-18-3412-01 3 184429384 184429384 G A MAGEF1 Silent p.L76L 0.13 TCGA-18-3412-01 3 46785594 46785594 C T PRSS45 Silent p.K50K 0.50 TCGA-18-3412-01 4 114251433 114251433 G A ANK2 Missense_Mutation p.G978S 0.55 probably_damaging(0.999) TCGA-18-3412-01 4 114253208 114253208 C T ANK2 Missense_Mutation p.P1069L 0.44 probably_damaging(1) TCGA-18-3412-01 4 128841744 128841744 G T MFSD8 3'UTR 0.41 TCGA-18-3412-01 4 160274672 160274672 A T RAPGEF2 Missense_Mutation p.L1214F 0.49 tolerated_low_confidence(0.16) benign(0.197) TCGA-18-3412-01 4 175598344 175598344 G T GLRA3 Missense_Mutation p.S271Y 0.17 deleterious(0) probably_damaging(1) TCGA-18-3412-01 4 177136878 177136878 G C ASB5 Missense_Mutation p.A288G 0.29 tolerated(1) benign(0.032) TCGA-18-3412-01 4 42145969 42145969 C G BEND4 Missense_Mutation p.R177P 0.72 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-18-3412-01 4 48566052 48566052 A G FRYL Missense_Mutation p.M1170T 0.12 deleterious(0) benign(0.036) TCGA-18-3412-01 4 98480197 98480197 C A STPG2 3'UTR 0.26 TCGA-18-3412-01 5 112175468 112175468 C A APC Missense_Mutation p.L1393I 0.36 probably_damaging(0.999) TCGA-18-3412-01 5 145649058 145649058 G A RBM27 Missense_Mutation p.E868K 0.35 tolerated(0.38) possibly_damaging(0.499) TCGA-18-3412-01 5 149216148 149216148 G A PPARGC1B Silent p.R710R 0.33 TCGA-18-3412-01 5 161116753 161116753 C G GABRA6 Missense_Mutation p.T214R 0.35 tolerated(0.47) probably_damaging(0.999) TCGA-18-3412-01 5 179320369 179320369 G A TBC1D9B Missense_Mutation p.L226F 0.28 tolerated(0.21) benign(0.065) TCGA-18-3412-01 5 35065919 35065919 C T PRLR Missense_Mutation p.E381K 0.26 tolerated(0.13) benign(0.025) TCGA-18-3412-01 5 45262556 45262556 C A HCN1 Missense_Mutation p.A714S 0.35 tolerated_low_confidence(0.85) benign(0.001) TCGA-18-3412-01 5 90046428 90046428 G C GPR98 Missense_Mutation p.E3679Q 0.42 probably_damaging(0.932) TCGA-18-3412-01 6 100390896 100390896 C T MCHR2 Silent p.S172S 0.20 TCGA-18-3412-01 6 116836786 116836786 T G FAM26E Missense_Mutation p.C188W 0.44 deleterious(0.01) possibly_damaging(0.818) TCGA-18-3412-01 6 151917703 151917703 T G CCDC170 Missense_Mutation p.N567K 0.34 deleterious(0.04) possibly_damaging(0.462) TCGA-18-3412-01 6 169621534 169621534 C G THBS2 Missense_Mutation p.G1121A 0.09 deleterious(0) probably_damaging(0.982) TCGA-18-3412-01 6 22569818 22569818 G T HDGFL1 Missense_Mutation p.G5V 0.85 tolerated(0.09) benign(0.134) TCGA-18-3412-01 6 74520791 74520791 C T CD109 Missense_Mutation p.T1208I 0.25 deleterious(0.02) benign(0.021) TCGA-18-3412-01 7 122635530 122635530 G A TAS2R16 Silent p.G53G 0.20 TCGA-18-3412-01 7 123256317 123256317 C A ASB15 Silent p.A50A 0.12 TCGA-18-3412-01 7 135307641 135307641 C T NUP205 Nonsense_Mutation p.R1483* 0.31 TCGA-18-3412-01 7 142239547 142239547 G A TRBV9 Silent p.A111A 0.09 TCGA-18-3412-01 7 142605706 142605706 C - TRPV5 Frame_Shift_Del p.D722Mfs*10 0.37 TCGA-18-3412-01 7 148718111 148718111 C G PDIA4 Missense_Mutation p.D73H 0.19 deleterious(0) probably_damaging(0.934) TCGA-18-3412-01 7 148718159 148718159 C A PDIA4 Nonsense_Mutation p.E57* 0.13 TCGA-18-3412-01 7 148769401 148769401 C A ZNF786 Missense_Mutation p.G155C 0.48 tolerated(0.07) benign(0.007) TCGA-18-3412-01 7 150555890 150555890 A G AOC1 Missense_Mutation p.E537G 0.15 deleterious(0.01) possibly_damaging(0.78) TCGA-18-3412-01 8 22033743 22033743 G A BMP1 Missense_Mutation p.R117H 0.24 deleterious(0) probably_damaging(0.999) TCGA-18-3412-01 8 24342874 24342874 G C ADAM7 Missense_Mutation p.K320N 0.28 deleterious(0) probably_damaging(0.999) TCGA-18-3412-01 8 43171087 43171087 G C POTEA RNA 0.30 TCGA-18-3412-01 8 86572334 86572334 G C REXO1L1P 3'UTR 0.09 TCGA-18-3412-01 8 87076814 87076814 C A PSKH2 Missense_Mutation p.V78F 0.46 deleterious(0.05) benign(0.417) TCGA-18-3412-01 9 113510016 113510016 A C MUSK Silent p.I283I 0.25 TCGA-18-3412-01 9 136661648 136661648 T A VAV2 Splice_Site p.X313_splice 0.70 TCGA-18-3412-01 9 2039694 2039694 G T SMARCA2 Missense_Mutation p.G195V 0.91 probably_damaging(0.999) TCGA-18-3412-01 9 38616032 38616032 T A ANKRD18A Silent p.L72L 0.75 TCGA-18-3412-01 9 84604698 84604698 G T SPATA31D1 Missense_Mutation p.Q64H 0.54 deleterious(0.03) benign(0.198) TCGA-18-3412-01 X 105167219 105167219 C T NRK Missense_Mutation p.P908L 0.08 deleterious(0) probably_damaging(0.999) TCGA-18-3412-01 X 112022434 112022434 G A AMOT Missense_Mutation p.A983V 0.98 unknown(0) TCGA-18-3412-01 X 115577987 115577987 A C SLC6A14 Silent p.S290S 0.07 TCGA-18-3414-01 10 102987414 102987414 G A LBX1 Silent p.A153A 0.11 TCGA-18-3414-01 10 106960916 106960916 G A SORCS3 Silent p.K722K 0.31 TCGA-18-3414-01 10 118084555 118084555 T C CCDC172 Missense_Mutation p.I11T 0.21 tolerated(0.07) benign(0.295) TCGA-18-3414-01 10 118440730 118440730 G A HSPA12A Silent p.T320T 0.29 TCGA-18-3414-01 10 12077311 12077311 T A UPF2 Nonsense_Mutation p.K38* 0.49 TCGA-18-3414-01 10 121285580 121285580 T C RGS10 Silent p.A73A 0.12 TCGA-18-3414-01 10 134219163 134219163 G A PWWP2B Missense_Mutation p.E387K 0.12 deleterious(0.02) probably_damaging(0.958) TCGA-18-3414-01 10 15600177 15600177 G A ITGA8 Missense_Mutation p.P888S 0.45 tolerated(0.2) benign(0.191) TCGA-18-3414-01 10 16873262 16873262 G A CUBN Missense_Mutation p.S3506L 0.09 deleterious(0) probably_damaging(0.99) TCGA-18-3414-01 10 25886869 25886869 G A GPR158 Missense_Mutation p.E772K 0.10 deleterious(0.04) possibly_damaging(0.691) TCGA-18-3414-01 10 26569943 26569943 A T GAD2 Missense_Mutation p.N388I 0.35 deleterious(0) probably_damaging(0.988) TCGA-18-3414-01 10 26830582 26830582 G A APBB1IP Missense_Mutation p.M372I 0.26 tolerated(0.36) benign(0.01) TCGA-18-3414-01 10 30318360 30318360 C T KIAA1462 Silent p.E239E 0.32 TCGA-18-3414-01 10 38407328 38407328 G A ZNF37A Missense_Mutation p.G417R 0.28 deleterious(0) benign(0.065) TCGA-18-3414-01 10 50824633 50824633 C T CHAT Silent p.P124P 0.33 TCGA-18-3414-01 10 55569209 55569209 T C PCDH15 Missense_Mutation p.E468G 0.42 deleterious_low_confidence(0) unknown(0) TCGA-18-3414-01 10 55569211 55569211 A T PCDH15 Silent p.A467A 0.42 TCGA-18-3414-01 10 74034808 74034808 C G DDIT4 Silent p.P187P 0.38 TCGA-18-3414-01 10 85973009 85973009 G T CDHR1 Missense_Mutation p.D649Y 0.27 deleterious(0) probably_damaging(0.951) TCGA-18-3414-01 10 88260398 88260398 G C WAPAL Missense_Mutation p.A201G 0.36 tolerated_low_confidence(0.7) benign(0.007) TCGA-18-3414-01 10 95720986 95720986 G C PIPSL RNA 0.24 TCGA-18-3414-01 11 101762074 101762074 G T ANGPTL5 Nonsense_Mutation p.S368* 0.32 TCGA-18-3414-01 11 117351887 117351887 A T DSCAML1 Splice_Site p.X946_splice 0.20 TCGA-18-3414-01 11 128709173 128709173 G T KCNJ1 Missense_Mutation p.F341L 0.34 deleterious(0.03) probably_damaging(0.992) TCGA-18-3414-01 11 132016281 132016281 G T NTM Silent p.L91L 0.32 TCGA-18-3414-01 11 132180054 132180054 A C NTM Missense_Mutation p.Q237P 0.32 deleterious(0.01) probably_damaging(0.936) TCGA-18-3414-01 11 134253897 134253897 C T B3GAT1 Missense_Mutation p.A100T 0.50 deleterious(0) probably_damaging(0.948) TCGA-18-3414-01 11 1718593 1718593 T G KRTAP5-6 Missense_Mutation p.C40G 0.45 deleterious_low_confidence(0) unknown(0) TCGA-18-3414-01 11 20398241 20398241 A G HTATIP2 Missense_Mutation p.N174S 0.23 tolerated(1) benign(0) TCGA-18-3414-01 11 278571 278571 T C NLRP6 Translation_Start_Site p.M1? 0.54 deleterious_low_confidence(0.01) possibly_damaging(0.775) TCGA-18-3414-01 11 33563987 33563987 C T KIAA1549L 5'UTR 0.11 TCGA-18-3414-01 11 408162 408162 C T SIGIRR Missense_Mutation p.G84E 0.17 tolerated(1) benign(0.018) TCGA-18-3414-01 11 48267476 48267476 T C OR4X2 Missense_Mutation p.L274P 0.30 deleterious(0) probably_damaging(0.999) TCGA-18-3414-01 11 534286 534286 C A HRAS Missense_Mutation p.G13C 0.55 deleterious(0.02) possibly_damaging(0.802) TCGA-18-3414-01 11 55136005 55136005 G T OR4A15 Missense_Mutation p.A216S 0.42 tolerated_low_confidence(0.11) possibly_damaging(0.784) TCGA-18-3414-01 11 55587663 55587663 C T OR5D18 Silent p.L186L 0.24 TCGA-18-3414-01 11 58384716 58384716 G A ZFP91 Nonsense_Mutation p.W417* 0.27 TCGA-18-3414-01 11 5905533 5905533 T C OR52E4 Missense_Mutation p.I4T 0.41 tolerated(0.43) benign(0.001) TCGA-18-3414-01 11 59211431 59211431 C T OR5A1 Nonsense_Mutation p.R264* 0.34 TCGA-18-3414-01 11 6190722 6190722 C A OR52B2 Missense_Mutation p.A279S 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-18-3414-01 11 62402444 62402444 T A GANAB Missense_Mutation p.S137C 0.52 tolerated(0.08) possibly_damaging(0.754) TCGA-18-3414-01 11 6244952 6244952 C A FAM160A2 Missense_Mutation p.R222L 0.48 deleterious(0) possibly_damaging(0.736) TCGA-18-3414-01 11 6261293 6261293 C A CNGA4 Intron 0.48 TCGA-18-3414-01 11 64359261 64359261 C A SLC22A12 Missense_Mutation p.P78Q 0.38 deleterious(0) probably_damaging(1) TCGA-18-3414-01 11 6655522 6655522 C T DCHS1 Missense_Mutation p.A605T 0.47 deleterious(0.02) probably_damaging(0.937) TCGA-18-3414-01 11 74062614 74062614 C T PGM2L1 Nonsense_Mutation p.W188* 0.26 TCGA-18-3414-01 11 78380545 78380545 T A TENM4 Missense_Mutation p.N2282I 0.30 deleterious(0) possibly_damaging(0.808) TCGA-18-3414-01 11 85415985 85415985 T C SYTL2 Silent p.L1068L 0.43 TCGA-18-3414-01 11 85701428 85701428 T C PICALM Missense_Mutation p.T425A 0.22 tolerated(0.55) benign(0.001) TCGA-18-3414-01 11 85988171 85988171 C A EED Missense_Mutation p.F372L 0.29 tolerated(0.51) benign(0.008) TCGA-18-3414-01 11 89911209 89911209 G A NAALAD2 Silent p.L594L 0.45 TCGA-18-3414-01 12 10224077 10224077 C T CLEC1A Missense_Mutation p.S233N 0.29 tolerated(0.24) benign(0.012) TCGA-18-3414-01 12 10271049 10271049 C A CLEC7A 3'UTR 0.34 TCGA-18-3414-01 12 109849790 109849790 C T MYO1H Missense_Mutation p.T485I 0.40 deleterious(0) probably_damaging(0.966) TCGA-18-3414-01 12 124401007 124401007 G A DNAH10 Missense_Mutation p.A3458T 0.36 benign(0.036) TCGA-18-3414-01 12 13061863 13061863 G T GPRC5A Missense_Mutation p.W227L 0.40 deleterious(0) probably_damaging(1) TCGA-18-3414-01 12 133327335 133327335 C G ANKLE2 Missense_Mutation p.E247D 0.27 deleterious(0.01) probably_damaging(0.971) TCGA-18-3414-01 12 13724888 13724888 G C GRIN2B Missense_Mutation p.P674R 0.43 deleterious(0) probably_damaging(1) TCGA-18-3414-01 12 21229461 21229461 G T SLCO1B7 Missense_Mutation p.G561V 0.36 deleterious(0) probably_damaging(0.99) TCGA-18-3414-01 12 21712602 21712602 G C GYS2 Silent p.L404L 0.24 TCGA-18-3414-01 12 3048522 3048522 T A TULP3 Missense_Mutation p.F414Y 0.43 deleterious(0) probably_damaging(0.986) TCGA-18-3414-01 12 49420600 49420600 A C KMT2D Missense_Mutation p.L5050R 0.10 unknown(0) TCGA-18-3414-01 12 54794636 54794636 G A ITGA5 Silent p.G879G 0.40 TCGA-18-3414-01 12 58135800 58135800 G T AGAP2 5'Flank 0.31 TCGA-18-3414-01 12 65633948 65633948 G T LEMD3 Nonsense_Mutation p.E686* 0.28 TCGA-18-3414-01 12 66700214 66700214 A T HELB Missense_Mutation p.I233L 0.30 tolerated(0.69) benign(0.007) TCGA-18-3414-01 12 6696922 6696922 T C CHD4 Missense_Mutation p.K1220R 0.43 tolerated(0.66) benign(0.001) TCGA-18-3414-01 12 81769626 81769626 C T PPFIA2 Missense_Mutation p.M360I 0.32 tolerated(0.15) benign(0.001) TCGA-18-3414-01 12 86199616 86199616 C T RASSF9 Missense_Mutation p.E58K 0.29 deleterious(0) probably_damaging(0.966) TCGA-18-3414-01 12 95611563 95611563 C G VEZT 5'UTR 0.50 TCGA-18-3414-01 13 107822900 107822900 C T FAM155A Missense_Mutation p.G441E 0.33 tolerated(0.11) benign(0.079) TCGA-18-3414-01 13 109704819 109704819 G T MYO16 Missense_Mutation p.S993I 0.43 deleterious(0.02) possibly_damaging(0.908) TCGA-18-3414-01 13 20978228 20978228 G C CRYL1 3'UTR 0.36 TCGA-18-3414-01 13 38154048 38154048 G T POSTN Missense_Mutation p.T537N 0.31 deleterious(0) possibly_damaging(0.794) TCGA-18-3414-01 13 38357173 38357173 G T TRPC4 Missense_Mutation p.L100I 0.34 tolerated(0.07) probably_damaging(0.999) TCGA-18-3414-01 13 53419706 53419706 C G PCDH8 Missense_Mutation p.G898A 0.25 deleterious(0) probably_damaging(0.997) TCGA-18-3414-01 13 60590048 60590048 T A DIAPH3 Missense_Mutation p.Q257L 0.36 deleterious(0) benign(0.029) TCGA-18-3414-01 13 76179926 76179926 C T UCHL3 Missense_Mutation p.A224V 0.19 tolerated(1) benign(0.003) TCGA-18-3414-01 14 101348387 101348387 G A RTL1 Silent p.I913I 0.39 TCGA-18-3414-01 14 104251226 104251226 C G PPP1R13B Missense_Mutation p.M61I 0.07 deleterious(0.05) benign(0.043) TCGA-18-3414-01 14 19574239 19574239 C - POTEG Frame_Shift_Del p.L433Cfs*14 0.09 TCGA-18-3414-01 14 21464794 21464794 C T METTL17 Missense_Mutation p.R397C 0.38 deleterious(0) probably_damaging(0.999) TCGA-18-3414-01 14 22251234 22251234 C A TRAV7 Missense_Mutation p.L9I 0.15 tolerated(0.13) possibly_damaging(0.804) TCGA-18-3414-01 14 33014470 33014470 C G AKAP6 Nonsense_Mutation p.S204* 0.10 TCGA-18-3414-01 14 52520416 52520416 G - NID2 Frame_Shift_Del p.P437Qfs*22 0.28 TCGA-18-3414-01 14 64450532 64450532 A G SYNE2 Silent p.E693E 0.25 TCGA-18-3414-01 14 72138262 72138262 C T SIPA1L1 Silent p.S894S 0.29 TCGA-18-3414-01 14 88892994 88892995 - A SPATA7 Frame_Shift_Ins p.D267Gfs*10 0.39 TCGA-18-3414-01 15 28230328 28230328 G C OCA2 Missense_Mutation p.R416G 0.32 deleterious(0.01) possibly_damaging(0.527) TCGA-18-3414-01 15 34042220 34042220 G A RYR3 Nonsense_Mutation p.W2747* 0.36 TCGA-18-3414-01 15 56739137 56739137 C G MNS1 Missense_Mutation p.E120Q 0.22 deleterious(0) probably_damaging(1) TCGA-18-3414-01 15 63362206 63362206 A G TPM1 Intron 0.16 TCGA-18-3414-01 15 65684253 65684253 A C IGDCC4 Missense_Mutation p.V730G 0.34 deleterious(0) possibly_damaging(0.558) TCGA-18-3414-01 15 66621462 66621462 G A DIS3L Missense_Mutation p.G786S 0.35 deleterious(0) probably_damaging(0.999) TCGA-18-3414-01 15 78385066 78385066 C A SH2D7 Missense_Mutation p.A47D 0.37 tolerated(0.08) benign(0.014) TCGA-18-3414-01 16 14340860 14340860 C T MKL2 Silent p.I581I 0.10 TCGA-18-3414-01 16 23079361 23079361 G A USP31 3'UTR 0.42 TCGA-18-3414-01 16 23712343 23712343 G T ERN2 Missense_Mutation p.D480E 0.38 tolerated(0.13) benign(0.212) TCGA-18-3414-01 16 24196462 24196462 G T PRKCB Missense_Mutation p.V522L 0.45 deleterious(0) probably_damaging(0.991) TCGA-18-3414-01 16 2812505 2812505 G T SRRM2 Missense_Mutation p.R659L 0.31 unknown(0) TCGA-18-3414-01 16 2813279 2813279 C T SRRM2 Missense_Mutation p.P917L 0.32 unknown(0) TCGA-18-3414-01 16 3066004 3066004 G T CLDN6 Missense_Mutation p.Q7K 0.31 deleterious(0) possibly_damaging(0.714) TCGA-18-3414-01 16 48234333 48234333 G A ABCC11 Missense_Mutation p.R646C 0.48 deleterious(0) probably_damaging(1) TCGA-18-3414-01 16 68373841 68373841 C T PRMT7 Silent p.F299F 0.28 TCGA-18-3414-01 16 89936621 89936621 C T SPIRE2 Missense_Mutation p.R696C 0.75 deleterious(0.01) probably_damaging(0.988) TCGA-18-3414-01 17 34416024 34416024 A T CCL3 Missense_Mutation p.S91R 0.49 deleterious(0) benign(0.288) TCGA-18-3414-01 17 3563244 3563244 G A CTNS Silent p.Q315Q 0.35 TCGA-18-3414-01 17 42398095 42398095 C G SLC25A39 Silent p.L232L 0.70 TCGA-18-3414-01 17 45822322 45822322 C T TBX21 Nonsense_Mutation p.R400* 0.29 TCGA-18-3414-01 17 534816 534816 C T VPS53 Missense_Mutation p.E221K 0.12 tolerated(0.13) benign(0.083) TCGA-18-3414-01 17 56083716 56083716 C G SRSF1 Missense_Mutation p.V123L 0.75 tolerated(0.05) benign(0.262) TCGA-18-3414-01 17 64738846 64738847 - C PRKCA Frame_Shift_Ins p.F498Sfs*33 0.44 TCGA-18-3414-01 17 7577120 7577120 C A TP53 Missense_Mutation p.R273L 0.50 deleterious(0) probably_damaging(0.993) TCGA-18-3414-01 17 78319717 78319717 C T RNF213 Missense_Mutation p.R2528W 0.71 probably_damaging(1) TCGA-18-3414-01 18 77477810 77477810 G T CTDP1 Missense_Mutation p.R737S 0.84 deleterious(0) probably_damaging(1) TCGA-18-3414-01 18 9122569 9122569 C T NDUFV2 Missense_Mutation p.T120I 0.12 deleterious(0) probably_damaging(0.997) TCGA-18-3414-01 19 11943153 11943153 A G ZNF440 Missense_Mutation p.R388G 0.44 deleterious(0.01) possibly_damaging(0.658) TCGA-18-3414-01 19 30934940 30934940 C T ZNF536 Silent p.P157P 0.31 TCGA-18-3414-01 19 35232191 35232191 T C ZNF181 Missense_Mutation p.F302S 0.10 deleterious(0) probably_damaging(0.996) TCGA-18-3414-01 19 37238781 37238781 C T ZNF850 Missense_Mutation p.R1054Q 0.39 tolerated(0.67) probably_damaging(0.986) TCGA-18-3414-01 19 38055702 38055702 G C ZNF571 Nonsense_Mutation p.S543* 0.12 TCGA-18-3414-01 19 38742961 38742961 A C PPP1R14A Missense_Mutation p.C100W 0.48 deleterious(0) possibly_damaging(0.621) TCGA-18-3414-01 19 4254382 4254382 G C CCDC94 Missense_Mutation p.E101Q 0.39 deleterious(0.02) benign(0.345) TCGA-18-3414-01 19 4704255 4704256 AG CGC DPP9 Frame_Shift_Ins p.L163Afs*73 0.43 TCGA-18-3414-01 19 47844500 47844500 G A C5AR2 Silent p.A148A 0.62 TCGA-18-3414-01 19 47844501 47844501 T A C5AR2 Missense_Mutation p.C149S 0.61 tolerated(0.4) benign(0.084) TCGA-18-3414-01 19 51358174 51358174 C A KLK3 5'UTR 0.36 TCGA-18-3414-01 19 52272195 52272195 G C FPR2 Missense_Mutation p.W95S 0.55 tolerated(0.1) benign(0.159) TCGA-18-3414-01 19 53304795 53304795 C T ZNF28 Nonsense_Mutation p.W101* 0.30 TCGA-18-3414-01 19 54758611 54758611 C G LILRB5 Missense_Mutation p.E414D 0.58 deleterious(0.02) possibly_damaging(0.837) TCGA-18-3414-01 19 54782923 54782923 A G LILRB2 Silent p.P233P 0.42 TCGA-18-3414-01 19 55106308 55106308 C T LILRA1 Silent p.F83F 0.08 TCGA-18-3414-01 19 55143129 55143129 C T LILRB1 Silent p.F83F 0.45 TCGA-18-3414-01 19 55351040 55351040 G A KIR2DS4 Silent p.P176P 0.51 TCGA-18-3414-01 19 55451776 55451776 G T NLRP7 Silent p.T137T 0.51 TCGA-18-3414-01 19 55652325 55652325 G A TNNT1 Missense_Mutation p.R105W 0.53 deleterious(0.01) probably_damaging(0.989) TCGA-18-3414-01 19 56515098 56515098 A T NLRP5 Missense_Mutation p.T27S 0.58 tolerated_low_confidence(0.33) benign(0.002) TCGA-18-3414-01 19 5751819 5751819 C T CATSPERD Silent p.H383H 0.30 TCGA-18-3414-01 19 7625941 7625941 G C PNPLA6 Missense_Mutation p.E1296D 0.33 deleterious(0.01) probably_damaging(0.979) TCGA-18-3414-01 19 9072086 9072086 A G MUC16 Silent p.S5120S 0.48 TCGA-18-3414-01 1 107691155 107691155 G C NTNG1 5'UTR 0.23 TCGA-18-3414-01 1 145580518 145580518 C G PIAS3 Missense_Mutation p.S273C 0.41 deleterious(0) benign(0.118) TCGA-18-3414-01 1 151337409 151337409 G C SELENBP1 Missense_Mutation p.L417V 0.14 tolerated(0.13) benign(0.035) TCGA-18-3414-01 1 156626131 156626131 G T BCAN Missense_Mutation p.G667V 0.47 deleterious(0.04) probably_damaging(0.979) TCGA-18-3414-01 1 157773754 157773754 C A FCRL1 Missense_Mutation p.S67I 0.52 deleterious(0) possibly_damaging(0.707) TCGA-18-3414-01 1 158619725 158619725 G - SPTA1 Frame_Shift_Del p.R1164Afs*76 0.30 TCGA-18-3414-01 1 161495234 161495234 G T HSPA6 Silent p.L262L 0.41 TCGA-18-3414-01 1 169993642 169993642 C G KIFAP3 Missense_Mutation p.D313H 0.17 deleterious(0.01) possibly_damaging(0.743) TCGA-18-3414-01 1 171605340 171605340 C T MYOC Missense_Mutation p.E414K 0.29 tolerated(1) benign(0.044) TCGA-18-3414-01 1 171753518 171753518 G T METTL13 Missense_Mutation p.R264S 0.23 tolerated(0.5) benign(0) TCGA-18-3414-01 1 175052998 175052998 C T TNN Silent p.P387P 0.37 TCGA-18-3414-01 1 175328863 175328863 C A TNR Missense_Mutation p.M953I 0.39 deleterious(0.01) benign(0.005) TCGA-18-3414-01 1 175372563 175372563 C T TNR Missense_Mutation p.C230Y 0.31 deleterious(0) probably_damaging(0.997) TCGA-18-3414-01 1 181740495 181740495 T C CACNA1E Missense_Mutation p.F1650L 0.18 tolerated(0.89) benign(0.418) TCGA-18-3414-01 1 186370357 186370357 G C OCLM 3'UTR 0.30 TCGA-18-3414-01 1 200946364 200946364 G A KIF21B Missense_Mutation p.A1434V 0.26 tolerated(0.1) benign(0.082) TCGA-18-3414-01 1 202400696 202400696 G T PPP1R12B Nonsense_Mutation p.E364* 0.43 TCGA-18-3414-01 1 218036154 218036154 A G SPATA17 Silent p.S348S 0.43 TCGA-18-3414-01 1 228456387 228456387 G T OBSCN Missense_Mutation p.R1857L 0.49 benign(0.122) TCGA-18-3414-01 1 229596457 229596457 T A NUP133 Missense_Mutation p.L915F 0.31 tolerated(0.06) probably_damaging(0.992) TCGA-18-3414-01 1 23418882 23418882 C G LUZP1 Missense_Mutation p.E625Q 0.21 deleterious(0.01) possibly_damaging(0.897) TCGA-18-3414-01 1 235840490 235840490 T A LYST Splice_Site p.X3647_splice 0.46 TCGA-18-3414-01 1 236343287 236343287 G A GPR137B Missense_Mutation p.V266I 0.22 tolerated(0.61) benign(0.019) TCGA-18-3414-01 1 245020153 245020153 T A HNRNPU Silent p.A540A 0.33 TCGA-18-3414-01 1 247050612 247050612 T C AHCTF1 Silent p.T800T 0.51 TCGA-18-3414-01 1 247752503 247752503 A T OR2G2 Missense_Mutation p.Y281F 0.41 deleterious(0) probably_damaging(0.971) TCGA-18-3414-01 1 248112725 248112725 T A OR2L8 Missense_Mutation p.M189K 0.29 tolerated(0.69) benign(0.052) TCGA-18-3414-01 1 248112726 248112726 G T OR2L8 Missense_Mutation p.M189I 0.29 tolerated(0.24) benign(0.01) TCGA-18-3414-01 1 248757048 248757048 G T OR2T10 Missense_Mutation p.L8M 0.28 tolerated(0.23) possibly_damaging(0.497) TCGA-18-3414-01 1 34158623 34158623 G A CSMD2 Missense_Mutation p.S1280L 0.50 deleterious(0) benign(0.033) TCGA-18-3414-01 1 35351752 35351752 G A DLGAP3 Silent p.I507I 0.55 TCGA-18-3414-01 1 36933539 36933539 C A CSF3R Missense_Mutation p.R583L 0.43 tolerated(0.24) benign(0.332) TCGA-18-3414-01 1 39833823 39833823 C T MACF1 Missense_Mutation p.L2197F 0.27 benign(0.028) TCGA-18-3414-01 1 6354951 6354951 T C ACOT7 Missense_Mutation p.I278V 0.18 tolerated(0.12) possibly_damaging(0.449) TCGA-18-3414-01 1 6409851 6409851 T A ACOT7 Silent p.A83A 0.35 TCGA-18-3414-01 1 66067350 66067350 G T LEPR Nonsense_Mutation p.E424* 0.42 TCGA-18-3414-01 1 71318417 71318417 A T PTGER3 3'UTR 0.39 TCGA-18-3414-01 1 76342658 76342658 C A MSH4 Missense_Mutation p.A448D 0.25 deleterious(0.01) benign(0.314) TCGA-18-3414-01 1 90400188 90400188 T C LRRC8D Missense_Mutation p.C521R 0.41 tolerated(0.07) benign(0.193) TCGA-18-3414-01 20 1616857 1616857 G C SIRPG Missense_Mutation p.A242G 0.39 deleterious(0) possibly_damaging(0.76) TCGA-18-3414-01 20 1915374 1915374 G T SIRPA Nonsense_Mutation p.E414* 0.44 TCGA-18-3414-01 20 20493389 20493389 G C RALGAPA2 Missense_Mutation p.L1542V 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-18-3414-01 20 25656728 25656728 G A ZNF337 Missense_Mutation p.S399L 0.24 deleterious(0.05) possibly_damaging(0.637) TCGA-18-3414-01 20 31825574 31825574 C A BPIFA1 Silent p.A19A 0.31 TCGA-18-3414-01 20 31825575 31825575 C T BPIFA1 Nonsense_Mutation p.Q20* 0.33 TCGA-18-3414-01 20 3218266 3218266 A G SLC4A11 Intron 0.08 TCGA-18-3414-01 20 33575001 33575001 A G MYH7B Missense_Mutation p.Y395C 0.33 probably_damaging(1) TCGA-18-3414-01 20 3725561 3725561 C A HSPA12B Silent p.G93G 0.40 TCGA-18-3414-01 20 37580566 37580566 T C FAM83D Silent p.I417I 0.42 TCGA-18-3414-01 20 44986276 44986276 C A SLC35C2 Missense_Mutation p.R86I 0.26 tolerated(0.05) benign(0.01) TCGA-18-3414-01 20 46254215 46254215 T G NCOA3 Missense_Mutation p.L116R 0.08 deleterious(0) probably_damaging(1) TCGA-18-3414-01 20 51872343 51872343 T C TSHZ2 Silent p.S782S 0.32 TCGA-18-3414-01 20 57768671 57768671 C T ZNF831 Missense_Mutation p.P866L 0.43 tolerated(0.28) benign(0.004) TCGA-18-3414-01 20 58581786 58581786 A G CDH26 Missense_Mutation p.M747V 0.28 tolerated(1) benign(0) TCGA-18-3414-01 20 60504842 60504842 G A CDH4 Silent p.A727A 0.25 TCGA-18-3414-01 20 60885614 60885614 G A LAMA5 Silent p.F3487F 0.49 TCGA-18-3414-01 20 61288084 61288084 C T SLCO4A1 Missense_Mutation p.P93L 0.60 deleterious(0) probably_damaging(1) TCGA-18-3414-01 20 61525406 61525406 C T DIDO1 Missense_Mutation p.E905K 0.23 possibly_damaging(0.64) TCGA-18-3414-01 21 10862630 10862630 G T IGHV1OR21-1 Missense_Mutation p.W3C 0.15 tolerated(0.06) possibly_damaging(0.633) TCGA-18-3414-01 21 11014981 11014981 A G TPTE RNA 0.43 TCGA-18-3414-01 21 35893803 35893803 C A RCAN1 Missense_Mutation p.G194W 0.29 deleterious(0) probably_damaging(1) TCGA-18-3414-01 22 16267078 16267078 C G POTEH Missense_Mutation p.K457N 0.04 deleterious(0) probably_damaging(0.919) TCGA-18-3414-01 22 19055686 19055686 C A DGCR2 Silent p.R85R 0.15 TCGA-18-3414-01 22 19055687 19055687 C A DGCR2 Missense_Mutation p.R85L 0.20 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-18-3414-01 22 23135349 23135349 G T IGLV2-11 Missense_Mutation p.D71Y 0.06 tolerated_low_confidence(0.18) benign(0.005) TCGA-18-3414-01 22 24225966 24225966 T C SLC2A11 Missense_Mutation p.V338A 0.08 tolerated(0.11) benign(0.015) TCGA-18-3414-01 22 32588926 32588926 C A RFPL2 Missense_Mutation p.K173N 0.26 tolerated(0.21) possibly_damaging(0.616) TCGA-18-3414-01 22 35796559 35796559 G T MCM5 Missense_Mutation p.R43L 0.29 deleterious(0.01) benign(0.11) TCGA-18-3414-01 22 35943063 35943063 C G RASD2 Silent p.L69L 0.49 TCGA-18-3414-01 22 36122449 36122449 G C APOL5 Missense_Mutation p.E112Q 0.08 tolerated(0.05) possibly_damaging(0.507) TCGA-18-3414-01 22 46835291 46835291 C G CELSR1 Missense_Mutation p.D1401H 0.29 deleterious(0.01) possibly_damaging(0.635) TCGA-18-3414-01 22 50728775 50728775 G A PLXNB2 Missense_Mutation p.P80L 0.36 deleterious(0) probably_damaging(1) TCGA-18-3414-01 2 102452415 102452415 C T MAP4K4 Missense_Mutation p.P250S 0.21 deleterious_low_confidence(0) unknown(0) TCGA-18-3414-01 2 103142717 103142717 G A SLC9A4 Splice_Site p.X651_splice 0.32 TCGA-18-3414-01 2 109384025 109384025 A G RANBP2 Missense_Mutation p.K2344E 0.41 deleterious(0.02) possibly_damaging(0.665) TCGA-18-3414-01 2 116572495 116572495 G A DPP10 Silent p.L613L 0.20 TCGA-18-3414-01 2 125671847 125671847 A C CNTNAP5 Missense_Mutation p.K1301N 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-18-3414-01 2 128610593 128610593 C A POLR2D Nonsense_Mutation p.E54* 0.11 TCGA-18-3414-01 2 128707902 128707902 G A SAP130 Silent p.L861L 0.43 TCGA-18-3414-01 2 128747236 128747236 C G SAP130 Missense_Mutation p.G587A 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.885) TCGA-18-3414-01 2 128913974 128913974 T A UGGT1 Missense_Mutation p.S749T 0.33 tolerated(0.58) benign(0.01) TCGA-18-3414-01 2 135180449 135180449 G C MGAT5 Missense_Mutation p.E585Q 0.08 tolerated(0.43) benign(0.007) TCGA-18-3414-01 2 141072507 141072507 G T LRP1B Missense_Mutation p.L4268I 0.41 possibly_damaging(0.694) TCGA-18-3414-01 2 141533709 141533709 C T LRP1B Missense_Mutation p.G1820R 0.15 probably_damaging(0.953) TCGA-18-3414-01 2 152427088 152427088 T C NEB Missense_Mutation p.M5681V 0.31 benign(0.002) TCGA-18-3414-01 2 166210793 166210793 A G SCN2A Missense_Mutation p.Q1004R 0.26 tolerated(0.09) possibly_damaging(0.602) TCGA-18-3414-01 2 166870332 166870332 C A SCN1A Missense_Mutation p.R1209S 0.38 deleterious(0) benign(0.145) TCGA-18-3414-01 2 166870333 166870333 C T SCN1A Missense_Mutation p.R1209K 0.37 tolerated(1) benign(0.003) TCGA-18-3414-01 2 179605328 179605328 C A TTN Missense_Mutation p.G4211V 0.18 TCGA-18-3414-01 2 179665403 179665403 G A TTN Missense_Mutation p.T101I 0.36 TCGA-18-3414-01 2 189876412 189876412 G T COL3A1 Missense_Mutation p.R1438I 0.22 unknown(0) TCGA-18-3414-01 2 191795262 191795262 G T GLS Missense_Mutation p.G509C 0.26 deleterious(0) probably_damaging(1) TCGA-18-3414-01 2 204735469 204735469 G A CTLA4 Missense_Mutation p.M90I 0.11 tolerated(0.07) benign(0.004) TCGA-18-3414-01 2 215843761 215843761 G A ABCA12 Missense_Mutation p.P1582S 0.20 tolerated(0.13) benign(0.081) TCGA-18-3414-01 2 227773574 227773574 A C RHBDD1 Missense_Mutation p.Q231P 0.30 tolerated(0.19) benign(0.005) TCGA-18-3414-01 2 228884383 228884383 G T SPHKAP Missense_Mutation p.A396E 0.34 deleterious(0.02) probably_damaging(0.998) TCGA-18-3414-01 2 228996713 228996713 T C SPHKAP Missense_Mutation p.I41V 0.30 tolerated(0.61) benign(0.029) TCGA-18-3414-01 2 233245354 233245354 T G ALPP Missense_Mutation p.M296R 0.10 deleterious(0) probably_damaging(0.991) TCGA-18-3414-01 2 234343465 234343465 C T DGKD Silent p.A168A 0.06 TCGA-18-3414-01 2 234638577 234638577 A G UGT1A3 Missense_Mutation p.I269V 0.27 tolerated(0.84) benign(0.052) TCGA-18-3414-01 2 238277716 238277716 G A COL6A3 Nonsense_Mutation p.R1464* 0.13 TCGA-18-3414-01 2 242407665 242407665 G A FARP2 Silent p.K668K 0.35 TCGA-18-3414-01 2 25467478 25467478 T C DNMT3A Missense_Mutation p.Y533C 0.79 deleterious(0) probably_damaging(1) TCGA-18-3414-01 2 33525541 33525541 A G LTBP1 Missense_Mutation p.N1087D 0.63 tolerated(0.34) benign(0.375) TCGA-18-3414-01 2 44016793 44016793 T C DYNC2LI1 Missense_Mutation p.W85R 0.69 deleterious(0) probably_damaging(0.999) TCGA-18-3414-01 2 48915589 48915590 - C LHCGR Frame_Shift_Ins p.S450Kfs*2 0.13 TCGA-18-3414-01 2 49210251 49210251 G T FSHR Silent p.T193T 0.13 TCGA-18-3414-01 2 55576722 55576722 C T CCDC88A Missense_Mutation p.E272K 0.30 deleterious(0) probably_damaging(0.986) TCGA-18-3414-01 2 56603032 56603032 C G CCDC85A Missense_Mutation p.P512A 0.29 tolerated_low_confidence(1) benign(0.002) TCGA-18-3414-01 2 61459593 61459593 C T USP34 Silent p.V2369V 0.35 TCGA-18-3414-01 2 61459646 61459646 C G USP34 Missense_Mutation p.D2352H 0.31 tolerated(0.09) benign(0.044) TCGA-18-3414-01 2 62065725 62065725 C G FAM161A Missense_Mutation p.D567H 0.05 deleterious(0) probably_damaging(0.999) TCGA-18-3414-01 2 68772369 68772369 A T APLF Missense_Mutation p.Y404F 0.33 deleterious(0.01) possibly_damaging(0.896) TCGA-18-3414-01 2 74593698 74593698 G A DCTN1 Missense_Mutation p.A839V 0.27 deleterious(0.05) probably_damaging(0.913) TCGA-18-3414-01 2 88857340 88857340 T C EIF2AK3 Missense_Mutation p.R1089G 0.57 tolerated(0.08) probably_damaging(0.994) TCGA-18-3414-01 2 89384807 89384807 C T IGKV3-15 Missense_Mutation p.A71T 0.62 tolerated(0.05) benign(0.259) TCGA-18-3414-01 2 89417018 89417018 C T IGKV1-17 Missense_Mutation p.G56S 0.69 tolerated(0.5) benign(0.004) TCGA-18-3414-01 2 97276805 97276805 C T KANSL3 Missense_Mutation p.R386K 0.39 deleterious(0.03) benign(0.367) TCGA-18-3414-01 3 108147433 108147433 T A MYH15 Missense_Mutation p.Q1223L 0.25 deleterious(0) possibly_damaging(0.877) TCGA-18-3414-01 3 111698038 111698038 C G ABHD10 Missense_Mutation p.R44G 0.34 tolerated_low_confidence(0.39) benign(0.001) TCGA-18-3414-01 3 122645282 122645282 A G SEMA5B Silent p.L419L 0.35 TCGA-18-3414-01 3 131198076 131198076 C A MRPL3 Intron 0.18 TCGA-18-3414-01 3 137483975 137483975 G C SOX14 Missense_Mutation p.G117R 0.67 tolerated(0.4) benign(0.214) TCGA-18-3414-01 3 140281797 140281797 A C CLSTN2 Missense_Mutation p.E786A 0.26 deleterious(0) probably_damaging(0.971) TCGA-18-3414-01 3 164906580 164906580 C A SLITRK3 Missense_Mutation p.R680L 0.56 tolerated(0.32) possibly_damaging(0.726) TCGA-18-3414-01 3 169644749 169644749 C G SAMD7 Missense_Mutation p.S233R 0.45 tolerated(0.11) benign(0.013) TCGA-18-3414-01 3 170002300 170002300 G A PRKCI Silent p.G373G 0.33 TCGA-18-3414-01 3 178917478 178917478 G A PIK3CA Missense_Mutation p.G118D 0.27 tolerated(0.05) possibly_damaging(0.704) TCGA-18-3414-01 3 196199439 196199439 T C RNF168 Missense_Mutation p.K323E 0.13 tolerated(0.67) benign(0.002) TCGA-18-3414-01 3 46718395 46718395 G A ALS2CL Silent p.F625F 0.11 TCGA-18-3414-01 4 122301679 122301679 C A QRFPR Nonsense_Mutation p.G42* 0.58 TCGA-18-3414-01 4 122825537 122825537 C A TRPC3 Missense_Mutation p.M731I 0.35 deleterious(0.03) possibly_damaging(0.516) TCGA-18-3414-01 4 141592006 141592006 C T TBC1D9 Missense_Mutation p.M378I 0.10 tolerated(0.06) probably_damaging(0.943) TCGA-18-3414-01 4 164247759 164247759 C T NPY1R 5'UTR 0.25 TCGA-18-3414-01 4 17826672 17826672 G A NCAPG Missense_Mutation p.E489K 0.29 tolerated(0.06) benign(0.02) TCGA-18-3414-01 4 187159519 187159519 G T KLKB1 Missense_Mutation p.G200C 0.45 deleterious(0.01) probably_damaging(1) TCGA-18-3414-01 4 24578074 24578074 G C DHX15 Nonsense_Mutation p.S100* 0.33 TCGA-18-3414-01 4 25677904 25677904 T A SLC34A2 Missense_Mutation p.F536I 0.37 tolerated(0.06) benign(0.011) TCGA-18-3414-01 4 39511414 39511414 C A UGDH Missense_Mutation p.Q259H 0.44 deleterious(0.04) benign(0.359) TCGA-18-3414-01 4 44631420 44631420 C G YIPF7 Silent p.L166L 0.33 TCGA-18-3414-01 4 46736995 46736995 C A COX7B2 Missense_Mutation p.R72I 0.37 deleterious(0) probably_damaging(0.993) TCGA-18-3414-01 4 47548682 47548682 G C ATP10D Missense_Mutation p.E480Q 0.05 deleterious(0.04) benign(0.091) TCGA-18-3414-01 4 53275 53275 C G ZNF595 5'UTR 0.08 TCGA-18-3414-01 4 75246733 75246733 C G EREG Missense_Mutation p.Q53E 0.25 tolerated(0.07) benign(0.158) TCGA-18-3414-01 4 76852392 76852392 C T NAAA Silent p.K188K 0.30 TCGA-18-3414-01 5 121187749 121187749 C T FTMT Missense_Mutation p.R31C 0.89 tolerated_low_confidence(0.16) benign(0.001) TCGA-18-3414-01 5 13714594 13714594 C A DNAH5 Missense_Mutation p.D4349Y 0.08 benign(0.068) TCGA-18-3414-01 5 13830842 13830842 C A DNAH5 Silent p.G1975G 0.16 TCGA-18-3414-01 5 140594237 140594237 T A PCDHB13 Missense_Mutation p.V181D 0.17 deleterious_low_confidence(0) possibly_damaging(0.812) TCGA-18-3414-01 5 140750236 140750236 G A PCDHGB3 Missense_Mutation p.R92Q 0.09 deleterious(0) probably_damaging(0.957) TCGA-18-3414-01 5 151239385 151239385 A T GLRA1 Missense_Mutation p.L146Q 0.45 deleterious(0) probably_damaging(0.988) TCGA-18-3414-01 5 156186285 156186285 C A SGCD Missense_Mutation p.P253T 0.64 tolerated(0.22) benign(0.001) TCGA-18-3414-01 5 156381726 156381726 G A TIMD4 Missense_Mutation p.H34Y 0.75 deleterious(0) benign(0.402) TCGA-18-3414-01 5 160097495 160097495 C T ATP10B Missense_Mutation p.C217Y 0.43 deleterious(0.02) benign(0) TCGA-18-3414-01 5 167671566 167671566 C A TENM2 Missense_Mutation p.L1888M 0.66 tolerated(0.12) probably_damaging(0.999) TCGA-18-3414-01 5 19591282 19591282 C G CDH18 Missense_Mutation p.A295P 0.32 tolerated(0.54) possibly_damaging(0.673) TCGA-18-3414-01 5 24487732 24487732 G C CDH10 3'UTR 0.05 TCGA-18-3414-01 5 38919038 38919038 C G OSMR Missense_Mutation p.P487A 0.11 tolerated(0.06) benign(0.367) TCGA-18-3414-01 5 41382017 41382017 C T PLCXD3 Silent p.S241S 0.13 TCGA-18-3414-01 5 485314 485314 C G SLC9A3 Silent p.A236A 0.69 TCGA-18-3414-01 5 74101044 74101044 C G FAM169A Missense_Mutation p.G246R 0.63 deleterious(0) probably_damaging(1) TCGA-18-3414-01 5 9202306 9202306 G C SEMA5A Missense_Mutation p.F231L 0.14 deleterious(0.01) benign(0.12) TCGA-18-3414-01 6 101103640 101103640 T C ASCC3 Missense_Mutation p.T920A 0.24 deleterious(0) possibly_damaging(0.872) TCGA-18-3414-01 6 121767995 121767995 T A GJA1 Translation_Start_Site p.M1? 0.43 deleterious(0) probably_damaging(0.986) TCGA-18-3414-01 6 127901587 127901587 T C C6orf58 Missense_Mutation p.F189S 0.27 deleterious(0) probably_damaging(0.988) TCGA-18-3414-01 6 130363886 130363886 T A L3MBTL3 Missense_Mutation p.D14E 0.32 deleterious(0) probably_damaging(0.996) TCGA-18-3414-01 6 144093534 144093534 G T PHACTR2 Missense_Mutation p.G458W 0.32 deleterious(0) probably_damaging(1) TCGA-18-3414-01 6 144768768 144768768 C T UTRN Nonsense_Mutation p.Q585* 0.29 TCGA-18-3414-01 6 152642923 152642923 A T SYNE1 Missense_Mutation p.V5339D 0.32 possibly_damaging(0.513) TCGA-18-3414-01 6 160491005 160491005 T A IGF2R Missense_Mutation p.L1453Q 0.57 deleterious(0) probably_damaging(0.988) TCGA-18-3414-01 6 165752791 165752791 C T PDE10A Silent p.K718K 0.15 TCGA-18-3414-01 6 26032069 26032069 C T HIST1H3B Missense_Mutation p.E74K 0.32 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-18-3414-01 6 27368113 27368113 G T ZNF391 5'UTR 0.25 TCGA-18-3414-01 6 28297448 28297448 C T ZSCAN31 Missense_Mutation p.E5K 0.38 tolerated(0.23) benign(0.102) TCGA-18-3414-01 6 29274902 29274902 G A OR14J1 Missense_Mutation p.V146M 0.41 deleterious(0.04) probably_damaging(0.961) TCGA-18-3414-01 6 3006702 3006702 A T NQO2 Intron 0.42 TCGA-18-3414-01 6 31948290 31948290 C T STK19 Missense_Mutation p.P293L 0.43 deleterious(0) probably_damaging(1) TCGA-18-3414-01 6 46826157 46826157 G A GPR116 Silent p.V1161V 0.46 TCGA-18-3414-01 6 50740417 50740417 C A TFAP2D Missense_Mutation p.T400K 0.32 deleterious(0.02) possibly_damaging(0.9) TCGA-18-3414-01 6 52051210 52051210 G C IL17A 5'UTR 0.36 TCGA-18-3414-01 6 53372322 53372322 T C GCLC Missense_Mutation p.D347G 0.29 tolerated(0.09) benign(0.201) TCGA-18-3414-01 6 6224962 6224962 G T F13A1 Silent p.V310V 0.38 TCGA-18-3414-01 6 7231198 7231198 G T RREB1 Missense_Mutation p.A956S 0.41 tolerated(0.2) benign(0.098) TCGA-18-3414-01 6 72974741 72974741 C G RIMS1 Missense_Mutation p.H1060Q 0.23 deleterious(0.04) benign(0.075) TCGA-18-3414-01 6 73951416 73951416 G C KHDC1 Missense_Mutation p.L184V 0.08 deleterious(0.02) probably_damaging(0.978) TCGA-18-3414-01 6 88854319 88854319 C T CNR1 Silent p.K225K 0.38 TCGA-18-3414-01 6 97345727 97345727 G A NDUFAF4 5'UTR 0.47 TCGA-18-3414-01 7 100346014 100346014 G T ZAN Silent p.G390G 0.52 TCGA-18-3414-01 7 100683043 100683043 C A MUC17 Silent p.V2782V 0.25 TCGA-18-3414-01 7 122047709 122047709 C A CADPS2 Missense_Mutation p.E877D 0.37 deleterious(0) probably_damaging(0.928) TCGA-18-3414-01 7 122635373 122635373 T C TAS2R16 Missense_Mutation p.K106E 0.32 deleterious(0) probably_damaging(1) TCGA-18-3414-01 7 128141953 128141953 C G METTL2B Missense_Mutation p.L374V 0.37 tolerated(0.37) benign(0.003) TCGA-18-3414-01 7 128359064 128359064 C G FAM71F1 Missense_Mutation p.T205S 0.30 tolerated(0.1) probably_damaging(0.999) TCGA-18-3414-01 7 131864554 131864554 C A PLXNA4 Missense_Mutation p.V1256L 0.33 tolerated(0.14) benign(0.233) TCGA-18-3414-01 7 132069983 132069983 A C PLXNA4 Intron 0.09 TCGA-18-3414-01 7 142124548 142124548 C A TRBV6-8 Silent p.L6L 0.15 TCGA-18-3414-01 7 14216398 14216398 G T DGKB Intron 0.42 TCGA-18-3414-01 7 148951507 148951507 G T ZNF212 3'UTR 0.42 TCGA-18-3414-01 7 149191588 149191588 G A ZNF746 Missense_Mutation p.P11S 0.29 tolerated(0.3) possibly_damaging(0.648) TCGA-18-3414-01 7 150171512 150171512 G C GIMAP8 Missense_Mutation p.R365S 0.33 deleterious(0) probably_damaging(1) TCGA-18-3414-01 7 151699823 151699823 G T GALNTL5 Missense_Mutation p.S228I 0.39 deleterious(0) probably_damaging(1) TCGA-18-3414-01 7 152139667 152139667 G T AC005631.1 3'Flank 0.44 TCGA-18-3414-01 7 157926395 157926395 C T PTPRN2 Silent p.A510A 0.33 TCGA-18-3414-01 7 158480095 158480097 TGA - NCAPG2 In_Frame_Del p.I237del 0.29 TCGA-18-3414-01 7 16341084 16341084 T C ISPD Missense_Mutation p.Y266C 0.60 deleterious(0) probably_damaging(0.997) TCGA-18-3414-01 7 44100498 44100498 G A DBNL Missense_Mutation p.V435M 0.31 deleterious(0) probably_damaging(1) TCGA-18-3414-01 7 45697428 45697428 C T ADCY1 Silent p.D417D 0.40 TCGA-18-3414-01 7 4900374 4900374 C A PAPOLB Missense_Mutation p.K355N 0.46 deleterious(0.02) probably_damaging(0.999) TCGA-18-3414-01 7 54610383 54610383 G T VSTM2A 5'UTR 0.33 TCGA-18-3414-01 7 57188613 57188613 G T ZNF479 Nonsense_Mutation p.S170* 0.33 TCGA-18-3414-01 7 82579540 82579540 C T PCLO Missense_Mutation p.R3455Q 0.43 unknown(0) TCGA-18-3414-01 7 87053341 87053341 G A ABCB4 Silent p.L698L 0.39 TCGA-18-3414-01 7 92733928 92733928 T G SAMD9 Missense_Mutation p.N495H 0.31 deleterious(0) probably_damaging(0.999) TCGA-18-3414-01 7 97619402 97619402 G T OCM2 Missense_Mutation p.D5E 0.23 tolerated(0.12) benign(0.127) TCGA-18-3414-01 8 109226865 109226865 G A EIF3E Silent p.F344F 0.43 TCGA-18-3414-01 8 110460514 110460515 - G PKHD1L1 Frame_Shift_Ins p.T1976Hfs*9 0.28 TCGA-18-3414-01 8 113240998 113240998 G A CSMD3 Missense_Mutation p.L3651F 0.38 deleterious(0) probably_damaging(0.943) TCGA-18-3414-01 8 113240999 113240999 A T CSMD3 Nonsense_Mutation p.Y3650* 0.42 TCGA-18-3414-01 8 113564935 113564935 G A CSMD3 Missense_Mutation p.R1417C 0.19 tolerated(0.05) probably_damaging(0.973) TCGA-18-3414-01 8 123965654 123965654 A G ZHX2 Missense_Mutation p.K635R 0.21 tolerated(0.36) benign(0.243) TCGA-18-3414-01 8 131812772 131812772 G T ADCY8 Missense_Mutation p.S987Y 0.51 deleterious(0.01) probably_damaging(1) TCGA-18-3414-01 8 139160773 139160773 A T FAM135B Missense_Mutation p.H1146Q 0.53 deleterious(0) probably_damaging(1) TCGA-18-3414-01 8 143624780 143624780 A G BAI1 Missense_Mutation p.Y1477C 0.42 deleterious(0) probably_damaging(0.998) TCGA-18-3414-01 8 21937755 21937755 G C DMTN Silent p.R300R 0.45 TCGA-18-3414-01 8 41456531 41456531 T C AGPAT6 5'UTR 0.10 TCGA-18-3414-01 8 49985441 49985441 C T C8orf22 Nonsense_Mutation p.R18* 0.51 TCGA-18-3414-01 8 52773466 52773466 C G PCMTD1 Missense_Mutation p.L82F 0.51 deleterious(0) possibly_damaging(0.752) TCGA-18-3414-01 8 69699678 69699678 G C C8orf34 Missense_Mutation p.D486H 0.23 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-18-3414-01 8 77776369 77776369 G T ZFHX4 Missense_Mutation p.E3473D 0.48 probably_damaging(0.979) TCGA-18-3414-01 8 82630427 82630427 C T ZFAND1 Missense_Mutation p.G30R 0.23 tolerated(0.09) possibly_damaging(0.883) TCGA-18-3414-01 8 87588009 87588009 C A CNGB3 3'UTR 0.43 TCGA-18-3414-01 8 88885761 88885761 C A DCAF4L2 Missense_Mutation p.V147L 0.61 tolerated(0.36) benign(0.004) TCGA-18-3414-01 8 88885967 88885967 A G DCAF4L2 Missense_Mutation p.L78P 0.49 deleterious(0.03) possibly_damaging(0.616) TCGA-18-3414-01 9 130197393 130197393 A G ZNF79 Missense_Mutation p.T44A 0.71 tolerated(1) benign(0.002) TCGA-18-3414-01 9 136337079 136337079 G A SLC2A6 3'UTR 0.75 TCGA-18-3414-01 9 140002866 140002866 C T MAN1B1 Silent p.I641I 0.09 TCGA-18-3414-01 9 140773552 140773552 G A CACNA1B Missense_Mutation p.V111M 0.11 deleterious(0) benign(0.277) TCGA-18-3414-01 9 16436420 16436420 G T BNC2 Missense_Mutation p.T591N 0.62 deleterious(0.03) possibly_damaging(0.747) TCGA-18-3414-01 9 21333994 21333994 C T KLHL9 Missense_Mutation p.D289N 0.10 tolerated(0.07) benign(0.04) TCGA-18-3414-01 9 35736623 35736623 G A CREB3 Missense_Mutation p.R339Q 0.14 tolerated(0.57) benign(0.07) TCGA-18-3414-01 9 5770270 5770270 C G KIAA1432 Missense_Mutation p.S1203C 0.12 tolerated(0.17) benign(0) TCGA-18-3414-01 X 110574147 110574147 C T DCX Missense_Mutation p.A392T 0.72 tolerated(0.13) benign(0.138) TCGA-18-3414-01 X 115593069 115593069 C A CT83 Missense_Mutation p.D61Y 0.74 deleterious(0.03) possibly_damaging(0.706) TCGA-18-3414-01 X 119064021 119064021 A C NKAP Missense_Mutation p.I344S 0.20 deleterious(0) unknown(0) TCGA-18-3414-01 X 30269565 30269565 T A MAGEB1 Missense_Mutation p.S319T 0.73 tolerated(0.58) unknown(0) TCGA-18-3414-01 X 33357413 33357413 C G DMD 5'UTR 0.30 TCGA-18-3414-01 X 35969926 35969926 G C CXorf22 Missense_Mutation p.D298H 0.64 deleterious(0.03) possibly_damaging(0.751) TCGA-18-3414-01 X 601814 601814 T C SHOX Missense_Mutation p.F209L 0.57 tolerated(0.11) possibly_damaging(0.778) TCGA-18-3414-01 X 73963358 73963358 C A KIAA2022 Missense_Mutation p.C345F 0.76 deleterious(0) probably_damaging(1) TCGA-18-3414-01 X 75397617 75397617 G C PBDC1 Missense_Mutation p.E192D 0.74 deleterious_low_confidence(0.04) benign(0) TCGA-18-3414-01 X 91090495 91090495 G T PCDH11X 5'UTR 0.62 TCGA-18-3415-01 10 11997500 11997500 G C UPF2 Missense_Mutation p.Q861E 0.43 tolerated(1) benign(0.003) TCGA-18-3415-01 10 16562655 16562655 T A C1QL3 Missense_Mutation p.H137L 0.11 tolerated(0.15) benign(0.147) TCGA-18-3415-01 10 18112280 18112280 T C MRC1 Missense_Mutation p.W100R 0.56 deleterious(0) probably_damaging(1) TCGA-18-3415-01 10 35484057 35484057 G C CREM Intron 0.62 TCGA-18-3415-01 10 50121401 50121401 C T LRRC18 Intron 0.16 TCGA-18-3415-01 10 76936210 76936210 C G SAMD8 Missense_Mutation p.F336L 0.45 deleterious(0) probably_damaging(0.978) TCGA-18-3415-01 11 1154249 1154249 C G MUC5AC Missense_Mutation p.S32C 0.17 deleterious(0.03) possibly_damaging(0.478) TCGA-18-3415-01 11 124294666 124294666 G T OR8B4 Silent p.I34I 0.22 TCGA-18-3415-01 11 14490962 14490962 C T COPB1 Missense_Mutation p.D629N 0.37 tolerated(0.21) benign(0.009) TCGA-18-3415-01 11 27390143 27390143 C T LGR4 Silent p.T709T 0.19 TCGA-18-3415-01 11 3680845 3680845 C G ART1 Silent p.L32L 0.10 TCGA-18-3415-01 11 4825066 4825066 C A OR52R1 Missense_Mutation p.C182F 0.16 deleterious(0) probably_damaging(1) TCGA-18-3415-01 11 48346985 48346985 C G OR4C3 Missense_Mutation p.L165V 0.13 tolerated(0.93) benign(0.094) TCGA-18-3415-01 11 51515731 51515731 C T OR4C46 Silent p.G150G 0.35 TCGA-18-3415-01 11 55340086 55340086 C A OR4C16 Silent p.A161A 0.14 TCGA-18-3415-01 11 55890545 55890545 G A OR8H3 Missense_Mutation p.G233R 0.22 deleterious(0) possibly_damaging(0.816) TCGA-18-3415-01 11 57089436 57089436 G A TNKS1BP1 5'UTR 0.24 TCGA-18-3415-01 11 58190360 58190360 G A OR5B2 Silent p.C125C 0.41 TCGA-18-3415-01 11 60183423 60183423 G A MS4A14 Missense_Mutation p.E361K 0.13 tolerated(0.45) benign(0.004) TCGA-18-3415-01 11 63884500 63884500 C T FLRT1 Missense_Mutation p.S254L 0.21 deleterious(0) probably_damaging(0.973) TCGA-18-3415-01 11 6471848 6471848 G A TRIM3 Missense_Mutation p.P625L 0.46 deleterious(0.02) probably_damaging(1) TCGA-18-3415-01 11 66359641 66359641 C A CCDC87 Missense_Mutation p.Q282H 0.37 tolerated(0.09) benign(0.241) TCGA-18-3415-01 11 66460763 66460763 C T SPTBN2 Missense_Mutation p.R1583Q 0.22 tolerated(0.08) probably_damaging(0.996) TCGA-18-3415-01 11 76372514 76372514 G C LRRC32 Silent p.L41L 0.33 TCGA-18-3415-01 11 84028240 84028240 C T DLG2 Intron 0.26 TCGA-18-3415-01 11 86125862 86125862 G C CCDC81 Missense_Mutation p.D475H 0.26 deleterious(0) probably_damaging(0.952) TCGA-18-3415-01 11 93454723 93454723 T C KIAA1731 Intron 0.36 TCGA-18-3415-01 11 9608356 9608356 A T WEE1 Missense_Mutation p.L580F 0.49 deleterious(0) probably_damaging(0.998) TCGA-18-3415-01 12 100751136 100751136 A T SLC17A8 5'UTR 0.16 TCGA-18-3415-01 12 112632695 112632695 G A HECTD4 Missense_Mutation p.L2769F 0.24 possibly_damaging(0.689) TCGA-18-3415-01 12 112632708 112632708 G A HECTD4 Silent p.L2764L 0.35 TCGA-18-3415-01 12 117665253 117665253 A C NOS1 Missense_Mutation p.V1234G 0.31 deleterious(0) probably_damaging(0.98) TCGA-18-3415-01 12 118457434 118457434 C T RFC5 Intron 0.23 TCGA-18-3415-01 12 130935867 130935867 C T RIMBP2 Missense_Mutation p.G109E 0.42 tolerated(0.21) benign(0.185) TCGA-18-3415-01 12 14958861 14958861 G A SMCO3 3'UTR 0.26 TCGA-18-3415-01 12 22623791 22623791 T A C2CD5 Missense_Mutation p.T805S 0.21 tolerated(0.86) benign(0.001) TCGA-18-3415-01 12 40013001 40013001 C A ABCD2 Missense_Mutation p.K139N 0.13 tolerated(0.22) benign(0.001) TCGA-18-3415-01 12 50037879 50037879 A G PRPF40B Intron 0.15 TCGA-18-3415-01 12 53819613 53819613 C T AMHR2 Silent p.H254H 0.17 TCGA-18-3415-01 12 57626301 57626301 C G SHMT2 Silent p.L220L 0.16 TCGA-18-3415-01 12 58135755 58135755 C G AGAP2 5'Flank 0.15 TCGA-18-3415-01 12 66700160 66700160 C T HELB Missense_Mutation p.P215S 0.19 deleterious(0) probably_damaging(1) TCGA-18-3415-01 12 7053872 7053872 G A C12orf57 Intron 0.41 TCGA-18-3415-01 12 93968716 93968716 G C SOCS2 Missense_Mutation p.D120H 0.09 deleterious(0.03) benign(0.026) TCGA-18-3415-01 12 97087548 97087548 C T C12orf55 Nonsense_Mutation p.Q2105* 0.14 TCGA-18-3415-01 12 99478771 99478771 A G ANKS1B Silent p.L853L 0.18 TCGA-18-3415-01 13 101763536 101763536 C T NALCN Missense_Mutation p.G745E 0.45 tolerated(1) benign(0.014) TCGA-18-3415-01 13 41828703 41828703 G T MTRF1 Missense_Mutation p.Q157K 0.14 tolerated(0.37) benign(0.009) TCGA-18-3415-01 13 45147368 45147368 G T TSC22D1 Missense_Mutation p.A948D 0.20 tolerated(0.06) possibly_damaging(0.573) TCGA-18-3415-01 13 45147369 45147369 C G TSC22D1 Missense_Mutation p.A948P 0.23 tolerated(0.07) possibly_damaging(0.863) TCGA-18-3415-01 13 47275295 47275295 G C LRCH1 Missense_Mutation p.M451I 0.16 tolerated(0.15) benign(0.012) TCGA-18-3415-01 13 50590025 50590025 A G KCNRG Silent p.T132T 0.35 TCGA-18-3415-01 13 51501612 51501612 C T RNASEH2B Missense_Mutation p.S45L 0.17 deleterious(0.01) benign(0.022) TCGA-18-3415-01 13 70456529 70456529 A T KLHL1 Missense_Mutation p.D371E 0.47 tolerated(0.09) benign(0.188) TCGA-18-3415-01 13 75936518 75936518 C T TBC1D4 Missense_Mutation p.E242K 0.18 tolerated(0.45) benign(0.008) TCGA-18-3415-01 13 77720309 77720309 G T MYCBP2 Missense_Mutation p.P2354Q 0.08 probably_damaging(0.984) TCGA-18-3415-01 14 102460520 102460520 G C DYNC1H1 Splice_Site p.X1006_splice 0.29 TCGA-18-3415-01 14 102460647 102460647 G C DYNC1H1 Missense_Mutation p.E1048Q 0.35 benign(0.005) TCGA-18-3415-01 14 20443959 20443959 C T OR4K15 Silent p.D94D 0.50 TCGA-18-3415-01 14 20502611 20502611 A T OR4K13 Missense_Mutation p.F103I 0.47 deleterious(0.01) possibly_damaging(0.839) TCGA-18-3415-01 14 22521061 22521061 G C TRAV21 Missense_Mutation p.A28P 0.34 tolerated(0.43) benign(0.001) TCGA-18-3415-01 14 45668130 45668130 G T FANCM Missense_Mutation p.M2000I 0.53 deleterious(0.01) possibly_damaging(0.718) TCGA-18-3415-01 14 47120363 47120363 C T RPL10L Missense_Mutation p.D193N 0.59 deleterious(0.03) possibly_damaging(0.74) TCGA-18-3415-01 14 56757088 56757088 C A PELI2 Missense_Mutation p.Q204K 0.38 tolerated(1) benign(0.001) TCGA-18-3415-01 15 23931855 23931855 C G NDN Silent p.A170A 0.28 TCGA-18-3415-01 15 49620318 49620318 A - GALK2 Frame_Shift_Del p.K447Nfs*16 0.08 TCGA-18-3415-01 15 59323210 59323210 A C RNF111 Missense_Mutation p.E63D 0.09 tolerated_low_confidence(0.53) probably_damaging(0.994) TCGA-18-3415-01 15 69715541 69715541 G C KIF23 Missense_Mutation p.E203Q 0.34 deleterious(0.04) benign(0.13) TCGA-18-3415-01 15 73028217 73028217 C T BBS4 Silent p.G386G 0.08 TCGA-18-3415-01 15 83805534 83805534 A G TM6SF1 3'UTR 0.50 TCGA-18-3415-01 16 20498164 20498164 G C ACSM2A 3'UTR 0.36 TCGA-18-3415-01 16 27495561 27495561 G A GTF3C1 Silent p.V1324V 0.25 TCGA-18-3415-01 16 30773931 30773931 T C RNF40 Missense_Mutation p.L22P 0.10 tolerated(0.11) benign(0.001) TCGA-18-3415-01 16 84492924 84492924 G T ATP2C2 Silent p.L755L 0.30 TCGA-18-3415-01 16 88705514 88705514 C T IL17C Silent p.L44L 0.52 TCGA-18-3415-01 16 89628749 89628749 G A RPL13 Missense_Mutation p.E143K 0.62 deleterious(0.02) benign(0.227) TCGA-18-3415-01 17 26207269 26207269 C T LYRM9 Intron 0.27 TCGA-18-3415-01 17 26885558 26885558 G A PIGS Silent p.S290S 0.16 TCGA-18-3415-01 17 29585486 29585512 CTAGAATCGAAAGGGGCTTGAAGTTAA - NF1 In_Frame_Del p.P1433_M1442delinsL 0.29 TCGA-18-3415-01 17 3336248 3336248 G T OR1E2 Silent p.P296P 0.53 TCGA-18-3415-01 17 34068269 34068269 A G RASL10B Missense_Mutation p.H186R 0.35 tolerated(0.1) possibly_damaging(0.84) TCGA-18-3415-01 17 35872857 35872857 C T DUSP14 Silent p.Y161Y 0.25 TCGA-18-3415-01 17 37947716 37947718 GCA - IKZF3 Nonsense_Mutation p.Y181_A182delins* 0.28 TCGA-18-3415-01 17 40948204 40948204 C A WNK4 Missense_Mutation p.S1165R 0.20 tolerated(0.4) benign(0.407) TCGA-18-3415-01 17 42162413 42162413 T C HDAC5 Missense_Mutation p.T722A 0.25 tolerated(0.1) benign(0.001) TCGA-18-3415-01 17 46056209 46056209 G T CDK5RAP3 Missense_Mutation p.A335S 0.19 deleterious(0.03) possibly_damaging(0.856) TCGA-18-3415-01 17 47004450 47004450 G T UBE2Z Missense_Mutation p.S340I 0.44 deleterious(0.01) possibly_damaging(0.902) TCGA-18-3415-01 17 5048769 5048769 C G USP6 Missense_Mutation p.Q688E 0.44 tolerated_low_confidence(0.37) probably_damaging(0.993) TCGA-18-3415-01 17 56348128 56348128 G A MPO Silent p.I709I 0.35 TCGA-18-3415-01 17 62793399 62793399 C A PLEKHM1P RNA 0.25 TCGA-18-3415-01 17 65720260 65720260 G C NOL11 Missense_Mutation p.K205N 0.23 tolerated(0.48) benign(0.049) TCGA-18-3415-01 17 7369076 7369076 C A ZBTB4 Missense_Mutation p.A349S 0.14 possibly_damaging(0.739) TCGA-18-3415-01 17 7577092 7577092 C G TP53 Silent p.R282R 0.32 TCGA-18-3415-01 17 7577093 7577093 C T TP53 Missense_Mutation p.R282Q 0.33 deleterious(0) probably_damaging(0.941) TCGA-18-3415-01 17 80442724 80442724 A G NARF Missense_Mutation p.H290R 0.50 deleterious(0.01) benign(0.25) TCGA-18-3415-01 18 14478285 14478285 T A CXADRP3 RNA 0.33 TCGA-18-3415-01 18 14478286 14478286 C A CXADRP3 RNA 0.33 TCGA-18-3415-01 18 31324466 31324466 T C ASXL3 Silent p.L1552L 0.18 TCGA-18-3415-01 18 43219767 43219767 G T SLC14A2 Missense_Mutation p.W300C 0.12 deleterious(0) possibly_damaging(0.762) TCGA-18-3415-01 18 44470757 44470757 G A PIAS2 Silent p.D95D 0.36 TCGA-18-3415-01 18 57103325 57103325 G A CCBE1 Missense_Mutation p.R346C 0.23 deleterious(0) probably_damaging(0.998) TCGA-18-3415-01 19 12243726 12243726 A G ZNF20 Silent p.C425C 0.35 TCGA-18-3415-01 19 12429407 12429407 T G ZNF563 3'UTR 0.59 TCGA-18-3415-01 19 21910559 21910559 G T ZNF100 Silent p.V185V 0.07 TCGA-18-3415-01 19 2834406 2834406 G C ZNF554 Missense_Mutation p.R391S 0.20 deleterious(0.04) probably_damaging(0.925) TCGA-18-3415-01 19 44679104 44679104 A G ZNF226 Intron 0.57 TCGA-18-3415-01 19 4538952 4538952 A G LRG1 Missense_Mutation p.I15T 0.35 deleterious(0.02) benign(0) TCGA-18-3415-01 19 50550136 50550136 G A ZNF473 Silent p.K812K 0.31 TCGA-18-3415-01 19 55255266 55255266 T G KIR2DL3 Missense_Mutation p.S132A 0.66 tolerated(0.08) benign(0.336) TCGA-18-3415-01 19 58371623 58371623 C G ZNF587 3'UTR 0.55 TCGA-18-3415-01 19 9091636 9091636 G A MUC16 Missense_Mutation p.P60L 0.54 unknown(0) TCGA-18-3415-01 19 9763810 9763810 G C ZNF562 Missense_Mutation p.H366D 0.17 deleterious(0) probably_damaging(0.952) TCGA-18-3415-01 19 9763923 9763923 G C ZNF562 Nonsense_Mutation p.S328* 0.19 TCGA-18-3415-01 1 103470046 103470046 T C COL11A1 Splice_Site p.X634_splice 0.16 TCGA-18-3415-01 1 145290898 145290898 G C NOTCH2NL 3'Flank 0.15 TCGA-18-3415-01 1 151779924 151779924 G A RORC 3'UTR 0.24 TCGA-18-3415-01 1 152282314 152282314 G A FLG Missense_Mutation p.S1683F 0.45 possibly_damaging(0.788) TCGA-18-3415-01 1 16054794 16054794 C A PLEKHM2 Silent p.G621G 0.47 TCGA-18-3415-01 1 168065986 168065986 T C GPR161 Missense_Mutation p.M307V 0.24 tolerated(0.96) benign(0.002) TCGA-18-3415-01 1 22063027 22063027 T C USP48 Silent p.P361P 0.25 TCGA-18-3415-01 1 226128657 226128658 - A LEFTY2 Frame_Shift_Ins p.V62Cfs*191 0.19 TCGA-18-3415-01 1 235331905 235331905 A G ARID4B Silent p.L1292L 0.11 TCGA-18-3415-01 1 235331906 235331906 C A ARID4B Missense_Mutation p.M1291I 0.10 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-18-3415-01 1 237758806 237758806 G C RYR2 Missense_Mutation p.R1482P 0.30 probably_damaging(0.977) TCGA-18-3415-01 1 237774129 237774129 C T RYR2 Missense_Mutation p.P1584L 0.29 probably_damaging(0.982) TCGA-18-3415-01 1 246829021 246829021 C T CNST Silent p.S664S 0.25 TCGA-18-3415-01 1 247025278 247025278 G A AHCTF1 Missense_Mutation p.P1249S 0.44 tolerated(0.27) benign(0.003) TCGA-18-3415-01 1 248224555 248224555 C A OR2L3 Missense_Mutation p.T191N 0.15 deleterious(0.02) benign(0.443) TCGA-18-3415-01 1 33321622 33321622 G T S100PBP Missense_Mutation p.D404Y 0.18 deleterious(0) probably_damaging(0.971) TCGA-18-3415-01 1 3553570 3553570 G A WRAP73 Nonsense_Mutation p.Q169* 0.18 TCGA-18-3415-01 1 37307519 37307519 G A GRIK3 Missense_Mutation p.R450W 0.22 deleterious(0) probably_damaging(0.916) TCGA-18-3415-01 1 52940912 52940926 TGATGTACAGTCCAT - ZCCHC11 In_Frame_Del p.M769_S773del 0.23 TCGA-18-3415-01 1 62973692 62973692 C T DOCK7 Missense_Mutation p.G1442R 0.18 deleterious(0.01) possibly_damaging(0.845) TCGA-18-3415-01 1 66102541 66102541 G A LEPR Missense_Mutation p.R1114K 0.24 tolerated(0.81) benign(0.003) TCGA-18-3415-01 1 66713282 66713282 G T PDE4B Missense_Mutation p.D141Y 0.27 deleterious(0) probably_damaging(1) TCGA-18-3415-01 1 68512321 68512321 C T DIRAS3 Silent p.E220E 0.15 TCGA-18-3415-01 1 74670749 74670749 C T FPGT Missense_Mutation p.L340F 0.28 deleterious(0.03) benign(0.29) TCGA-18-3415-01 1 7913479 7913479 C G UTS2 Missense_Mutation p.V5L 0.19 tolerated_low_confidence(0.27) benign(0.004) TCGA-18-3415-01 20 13029823 13029823 C G SPTLC3 Intron 0.27 TCGA-18-3415-01 20 33572514 33572514 C T MYH7B Missense_Mutation p.T257M 0.14 possibly_damaging(0.522) TCGA-18-3415-01 20 33894581 33894581 C A UQCC1 Missense_Mutation p.G218V 0.23 deleterious(0) probably_damaging(0.998) TCGA-18-3415-01 20 43129878 43129878 G A SERINC3 Silent p.I373I 0.26 TCGA-18-3415-01 20 8707972 8707972 T C PLCB1 Silent p.F565F 0.11 TCGA-18-3415-01 21 34927341 34927341 G A SON Missense_Mutation p.S1935N 0.12 unknown(0) TCGA-18-3415-01 21 37408483 37408483 T A SETD4 Missense_Mutation p.T419S 0.39 tolerated(0.74) benign(0.016) TCGA-18-3415-01 21 42720533 42720533 C G FAM3B Missense_Mutation p.A167G 0.20 tolerated(0.12) benign(0.248) TCGA-18-3415-01 22 42032651 42032651 G A XRCC6 Missense_Mutation p.D156N 0.09 tolerated(0.38) benign(0.001) TCGA-18-3415-01 2 113405026 113405026 G C SLC20A1 Missense_Mutation p.E154Q 0.26 tolerated(0.22) benign(0.124) TCGA-18-3415-01 2 141457889 141457889 G T LRP1B Nonsense_Mutation p.Y2243* 0.24 TCGA-18-3415-01 2 166165204 166165204 G C SCN2A Missense_Mutation p.E169Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-18-3415-01 2 178098953 178098953 C G NFE2L2 Missense_Mutation p.G31A 0.15 deleterious(0.02) benign(0.318) TCGA-18-3415-01 2 179434029 179434029 G T TTN Silent p.V25610V 0.21 TCGA-18-3415-01 2 179606435 179606435 G A TTN Missense_Mutation p.T3842I 0.15 TCGA-18-3415-01 2 186670267 186670267 C A FSIP2 Missense_Mutation p.P5501T 0.21 probably_damaging(0.965) TCGA-18-3415-01 2 186671569 186671569 G C FSIP2 Missense_Mutation p.V5935L 0.29 probably_damaging(0.992) TCGA-18-3415-01 2 196759756 196759756 C T DNAH7 Missense_Mutation p.G1614R 0.10 deleterious(0) probably_damaging(0.997) TCGA-18-3415-01 2 197004392 197004392 G A STK17B Missense_Mutation p.S263L 0.21 deleterious(0) probably_damaging(0.998) TCGA-18-3415-01 2 20153629 20153629 G C WDR35 Missense_Mutation p.Q467E 0.36 tolerated(0.58) probably_damaging(0.966) TCGA-18-3415-01 2 211521310 211521310 C A CPS1 Missense_Mutation p.T1213N 0.26 deleterious(0) probably_damaging(0.999) TCGA-18-3415-01 2 29416042 29416042 C T ALK 3'UTR 0.16 TCGA-18-3415-01 2 39095469 39095469 T C DHX57 Missense_Mutation p.R27G 0.15 tolerated_low_confidence(0.24) unknown(0) TCGA-18-3415-01 2 45778336 45778336 G A SRBD1 Missense_Mutation p.P535S 0.16 deleterious(0.03) benign(0.334) TCGA-18-3415-01 2 55253647 55253647 C G RTN4 Missense_Mutation p.V530L 0.30 deleterious(0.02) possibly_damaging(0.515) TCGA-18-3415-01 2 7179995 7179995 G A RNF144A 3'UTR 0.33 TCGA-18-3415-01 2 74042819 74042819 G T C2orf78 Missense_Mutation p.C490F 0.26 deleterious(0.03) benign(0.005) TCGA-18-3415-01 2 79348713 79348713 C A REG1A Silent p.P30P 0.13 TCGA-18-3415-01 3 10347307 10347307 G A SEC13 Nonsense_Mutation p.Q174* 0.27 TCGA-18-3415-01 3 121100357 121100357 G T STXBP5L Missense_Mutation p.E879D 0.55 tolerated(0.1) benign(0.032) TCGA-18-3415-01 3 138219695 138219714 GATAGTGTTTTCAAGGACTT A CEP70 Frame_Shift_Del p.K411Lfs*10 0.16 TCGA-18-3415-01 3 14862234 14862234 C T FGD5 Silent p.S552S 0.34 TCGA-18-3415-01 3 151012086 151012086 G T GPR87 Missense_Mutation p.F316L 0.42 tolerated(0.06) probably_damaging(0.986) TCGA-18-3415-01 3 192516538 192516538 G T MB21D2 Missense_Mutation p.N371K 0.11 tolerated(0.84) benign(0.186) TCGA-18-3415-01 3 195027347 195027347 T A ACAP2 Splice_Site p.X337_splice 0.46 TCGA-18-3415-01 3 25777608 25777608 G T NGLY1 Missense_Mutation p.Q346K 0.23 deleterious(0) benign(0.321) TCGA-18-3415-01 3 31871555 31871555 C T OSBPL10 Missense_Mutation p.G236S 0.25 tolerated(0.39) possibly_damaging(0.509) TCGA-18-3415-01 3 39227557 39227557 A T XIRP1 Missense_Mutation p.L1127Q 0.42 tolerated_low_confidence(0.06) benign(0.009) TCGA-18-3415-01 3 40351392 40351392 G T EIF1B 5'UTR 0.28 TCGA-18-3415-01 3 42133051 42133051 T A TRAK1 Nonsense_Mutation p.C30* 0.36 TCGA-18-3415-01 3 44541282 44541282 A T ZNF852 Nonsense_Mutation p.C329* 0.53 TCGA-18-3415-01 3 57545540 57545540 C A PDE12 Missense_Mutation p.P547T 0.50 deleterious(0.02) probably_damaging(0.968) TCGA-18-3415-01 4 113436154 113436154 A G NEUROG2 Missense_Mutation p.Y160H 0.34 deleterious(0) probably_damaging(0.997) TCGA-18-3415-01 4 115773882 115773882 T C NDST4 Silent p.T605T 0.38 TCGA-18-3415-01 4 115997337 115997337 C G NDST4 Missense_Mutation p.D286H 0.49 deleterious(0) probably_damaging(0.998) TCGA-18-3415-01 4 155458514 155458514 A G PLRG1 Missense_Mutation p.F470S 0.22 deleterious(0) probably_damaging(0.999) TCGA-18-3415-01 4 159140530 159140530 T A TMEM144 Missense_Mutation p.L134Q 0.36 deleterious(0) probably_damaging(0.992) TCGA-18-3415-01 4 185689444 185689444 C A ACSL1 Intron 0.34 TCGA-18-3415-01 4 248528 248528 C G ZNF876P RNA 0.32 TCGA-18-3415-01 4 37633048 37633048 C G RELL1 Missense_Mutation p.A260P 0.26 tolerated(0.2) benign(0.003) TCGA-18-3415-01 4 77816829 77816829 G T SOWAHB Missense_Mutation p.A725D 0.23 tolerated(0.13) possibly_damaging(0.665) TCGA-18-3415-01 4 8046942 8046942 G T ABLIM2 Silent p.I283I 0.24 TCGA-18-3415-01 5 118529647 118529647 C G DMXL1 Missense_Mutation p.S2480C 0.25 tolerated(0.06) possibly_damaging(0.897) TCGA-18-3415-01 5 125960471 125960471 G A PHAX Missense_Mutation p.E374K 0.14 deleterious(0.01) probably_damaging(0.939) TCGA-18-3415-01 5 145393529 145393529 G A SH3RF2 Missense_Mutation p.E322K 0.18 deleterious(0.02) benign(0.019) TCGA-18-3415-01 5 178043926 178043926 C T CLK4 Missense_Mutation p.E167K 0.31 deleterious(0.02) benign(0.4) TCGA-18-3415-01 5 33534964 33534964 T A ADAMTS12 Missense_Mutation p.N1527I 0.13 deleterious(0.03) benign(0.119) TCGA-18-3415-01 5 36143415 36143415 C A LMBRD2 Missense_Mutation p.V13F 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-18-3415-01 5 36184122 36184122 T C SKP2 3'UTR 0.24 TCGA-18-3415-01 5 40852859 40852859 C T CARD6 Silent p.L475L 0.21 TCGA-18-3415-01 5 41382440 41382440 G T PLCXD3 Silent p.S100S 0.11 TCGA-18-3415-01 5 43650653 43650653 G T NNT Missense_Mutation p.A561S 0.15 tolerated(0.05) benign(0.049) TCGA-18-3415-01 5 5182171 5182171 A T ADAMTS16 Silent p.R172R 0.10 TCGA-18-3415-01 5 6620290 6620290 C - NSUN2 Frame_Shift_Del p.R248Sfs*4 0.23 TCGA-18-3415-01 6 135763839 135763839 G T AHI1 Missense_Mutation p.P598Q 0.29 deleterious(0) probably_damaging(1) TCGA-18-3415-01 6 26032069 26032069 C T HIST1H3B Missense_Mutation p.E74K 0.31 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-18-3415-01 6 26452620 26452620 G A BTN3A3 Missense_Mutation p.R579H 0.17 tolerated_low_confidence(0.81) benign(0.001) TCGA-18-3415-01 6 5771802 5771802 C G FARS2 3'Flank 0.25 TCGA-18-3415-01 6 64395298 64395298 C T PHF3 Nonsense_Mutation p.Q559* 0.16 TCGA-18-3415-01 7 107824715 107824715 T C NRCAM Silent p.S758S 0.11 TCGA-18-3415-01 7 117180378 117180378 T C CFTR Missense_Mutation p.L365P 0.16 deleterious(0.03) benign(0.29) TCGA-18-3415-01 7 121985692 121985692 C G CADPS2 Missense_Mutation p.R1183P 0.12 deleterious(0) probably_damaging(1) TCGA-18-3415-01 7 122755644 122755644 C T SLC13A1 Nonsense_Mutation p.W572* 0.22 TCGA-18-3415-01 7 127544839 127544839 A G SND1 Silent p.E498E 0.10 TCGA-18-3415-01 7 140255464 140255464 C A DENND2A Missense_Mutation p.R670L 0.38 deleterious(0) probably_damaging(0.996) TCGA-18-3415-01 7 142197744 142197744 A G TRBV11-2 RNA 0.41 TCGA-18-3415-01 7 142250944 142250944 C T TRBV6-4 Missense_Mutation p.G35R 0.40 deleterious(0.04) possibly_damaging(0.838) TCGA-18-3415-01 7 142723325 142723325 C A OR9A2 Missense_Mutation p.D299Y 0.33 deleterious(0) benign(0.078) TCGA-18-3415-01 7 16348207 16348207 C - ISPD Frame_Shift_Del p.A244Pfs*2 0.10 TCGA-18-3415-01 7 25176259 25176259 T C C7orf31 Missense_Mutation p.T369A 0.41 tolerated(0.19) benign(0.269) TCGA-18-3415-01 7 31682731 31682731 C A CCDC129 Missense_Mutation p.P609T 0.12 tolerated(0.09) benign(0.014) TCGA-18-3415-01 7 44747622 44747622 C T OGDH 3'UTR 0.44 TCGA-18-3415-01 7 48315064 48315064 A T ABCA13 Missense_Mutation p.Q1934L 0.19 possibly_damaging(0.764) TCGA-18-3415-01 7 53104213 53104213 C G POM121L12 Missense_Mutation p.F283L 0.31 tolerated_low_confidence(0.09) possibly_damaging(0.682) TCGA-18-3415-01 7 87800867 87800867 G A ADAM22 Missense_Mutation p.R764Q 0.15 tolerated(0.08) possibly_damaging(0.579) TCGA-18-3415-01 7 94898580 94898580 G T PPP1R9A Missense_Mutation p.R962I 0.17 tolerated(0.07) possibly_damaging(0.756) TCGA-18-3415-01 8 15978098 15978098 G T MSR1 Silent p.R351R 0.37 TCGA-18-3415-01 8 3257006 3257006 G T CSMD1 Missense_Mutation p.P771H 0.15 probably_damaging(0.978) TCGA-18-3415-01 8 35608158 35608158 C A UNC5D Missense_Mutation p.A665E 0.23 deleterious(0.01) benign(0.097) TCGA-18-3415-01 8 61735123 61735123 C T CHD7 Missense_Mutation p.L1007F 0.23 probably_damaging(0.999) TCGA-18-3415-01 8 71078966 71078966 C A NCOA2 Nonsense_Mutation p.E189* 0.16 TCGA-18-3415-01 8 77763355 77763355 A G ZFHX4 Missense_Mutation p.N1400D 0.17 possibly_damaging(0.486) TCGA-18-3415-01 8 81426166 81426166 C T ZBTB10 Missense_Mutation p.S628L 0.28 deleterious(0.04) benign(0.058) TCGA-18-3415-01 8 85785583 85785583 C T RALYL Silent p.S225S 0.27 TCGA-18-3415-01 8 87235284 87235284 G A SLC7A13 Missense_Mutation p.A245V 0.19 tolerated(0.11) benign(0.229) TCGA-18-3415-01 8 92307881 92307881 C T SLC26A7 Nonsense_Mutation p.Q143* 0.25 TCGA-18-3415-01 9 116857503 116857503 G T KIF12 Silent p.V197V 0.17 TCGA-18-3415-01 9 123629244 123629244 C T PHF19 Splice_Site p.X205_splice 0.28 TCGA-18-3415-01 9 136508547 136508547 G A DBH Missense_Mutation p.V253I 0.30 tolerated(1) benign(0.012) TCGA-18-3415-01 9 19424709 19424709 G A ACER2 Missense_Mutation p.V79I 0.19 tolerated(0.14) benign(0.327) TCGA-18-3415-01 9 19576937 19576937 C A SLC24A2 Missense_Mutation p.A405S 0.19 tolerated(0.42) benign(0.011) TCGA-18-3415-01 9 27185498 27185506 CATACGGAT - TEK In_Frame_Del p.T401_H403del 0.16 TCGA-18-3415-01 9 6540093 6540093 T A GLDC Missense_Mutation p.N875Y 0.18 deleterious(0) probably_damaging(0.962) TCGA-18-3415-01 9 90499950 90499950 A T SPATA31E1 Missense_Mutation p.D183V 0.55 deleterious(0.05) probably_damaging(0.93) TCGA-18-3415-01 9 92006320 92006320 G A SEMA4D Silent p.F211F 0.22 TCGA-18-3415-01 X 110970887 110970887 G T ALG13 Missense_Mutation p.E712D 0.64 tolerated(0.11) benign(0.004) TCGA-18-3416-01 10 101603605 101603605 C T ABCC2 Missense_Mutation p.T1264I 0.35 deleterious(0) possibly_damaging(0.693) TCGA-18-3416-01 10 1053023 1053023 G T GTPBP4 Silent p.V356V 0.24 TCGA-18-3416-01 10 106160462 106160462 G C CCDC147 Missense_Mutation p.G614R 0.34 deleterious(0) probably_damaging(0.909) TCGA-18-3416-01 10 118315626 118315626 C A PNLIP Missense_Mutation p.T309N 0.22 tolerated(0.13) benign(0.004) TCGA-18-3416-01 10 119043185 119043185 C A PDZD8 Missense_Mutation p.G1020V 0.25 deleterious(0) probably_damaging(1) TCGA-18-3416-01 10 124671179 124671179 A G FAM24A Missense_Mutation p.K10R 0.27 tolerated(0.06) benign(0.133) TCGA-18-3416-01 10 124924637 124924637 C A BUB3 3'UTR 0.22 TCGA-18-3416-01 10 127529887 127529887 A G BCCIP Missense_Mutation p.I280V 0.18 deleterious_low_confidence(0.02) benign(0.068) TCGA-18-3416-01 10 129907439 129907439 C T MKI67 Missense_Mutation p.V889M 0.19 deleterious(0.05) benign(0.22) TCGA-18-3416-01 10 21805197 21805197 C G SKIDA1 Missense_Mutation p.E519Q 0.50 deleterious(0.05) unknown(0) TCGA-18-3416-01 10 27703205 27703205 G C PTCHD3 5'UTR 0.56 TCGA-18-3416-01 10 44053470 44053470 C A ZNF239 Missense_Mutation p.D20Y 0.33 tolerated_low_confidence(0.96) benign(0) TCGA-18-3416-01 10 45799862 45799862 C A OR13A1 Silent p.L3L 0.23 TCGA-18-3416-01 10 55616991 55616991 G A PCDH15 Silent p.V1250V 0.18 TCGA-18-3416-01 10 69804216 69804216 C G HERC4 Missense_Mutation p.D111H 0.14 tolerated(0.09) possibly_damaging(0.829) TCGA-18-3416-01 10 71175996 71175996 C A TACR2 Missense_Mutation p.M28I 0.31 tolerated(0.08) benign(0.165) TCGA-18-3416-01 10 72604314 72604314 G C SGPL1 Missense_Mutation p.E38Q 0.32 tolerated(0.06) possibly_damaging(0.677) TCGA-18-3416-01 10 81317816 81317816 G T SFTPA2 Missense_Mutation p.T121K 0.11 deleterious(0.05) benign(0.004) TCGA-18-3416-01 10 85992387 85992387 C T LRIT1 Missense_Mutation p.A390T 0.64 tolerated(0.52) benign(0.01) TCGA-18-3416-01 10 96005734 96005734 A G PLCE1 Missense_Mutation p.N818D 0.38 tolerated(0.3) benign(0.007) TCGA-18-3416-01 10 96954338 96954338 C G C10orf129 Silent p.T32T 0.47 TCGA-18-3416-01 10 97440243 97440243 A T TCTN3 Missense_Mutation p.C526S 0.24 deleterious(0.01) possibly_damaging(0.873) TCGA-18-3416-01 11 101815132 101815132 A T KIAA1377 Missense_Mutation p.R129W 0.59 deleterious(0) probably_damaging(0.997) TCGA-18-3416-01 11 108175517 108175517 C T ATM Missense_Mutation p.T1871I 0.46 deleterious(0.04) benign(0.008) TCGA-18-3416-01 11 117310040 117310040 C G DSCAML1 Silent p.T1422T 0.27 TCGA-18-3416-01 11 123464819 123464819 T A GRAMD1B Missense_Mutation p.N95K 0.48 deleterious(0.01) probably_damaging(0.993) TCGA-18-3416-01 11 123810687 123810687 C A OR4D5 Missense_Mutation p.R122S 0.52 deleterious(0) benign(0.256) TCGA-18-3416-01 11 124135591 124135591 C A OR8G5 Missense_Mutation p.A290E 0.65 deleterious(0.03) benign(0.215) TCGA-18-3416-01 11 126126696 126126696 C A FAM118B Missense_Mutation p.P311T 0.48 deleterious(0) probably_damaging(0.999) TCGA-18-3416-01 11 33689492 33689492 G A KIAA1549L Missense_Mutation p.R1781H 0.33 tolerated(0.07) probably_damaging(0.999) TCGA-18-3416-01 11 48146592 48146592 C T PTPRJ Missense_Mutation p.P316L 0.32 tolerated(0.24) benign(0.001) TCGA-18-3416-01 11 48285947 48285947 G A OR4X1 Missense_Mutation p.V179I 0.47 tolerated(0.07) possibly_damaging(0.812) TCGA-18-3416-01 11 4904106 4904106 G T OR51T1 Missense_Mutation p.W353L 0.50 tolerated_low_confidence(0.08) benign(0.059) TCGA-18-3416-01 11 4936671 4936671 C A OR51G2 Missense_Mutation p.D75Y 0.52 deleterious(0) probably_damaging(0.999) TCGA-18-3416-01 11 55135842 55135842 G A OR4A15 Silent p.L161L 0.26 TCGA-18-3416-01 11 55418457 55418457 T G OR4S2 Missense_Mutation p.F26L 0.10 deleterious(0.02) benign(0.016) TCGA-18-3416-01 11 55541730 55541730 G A OR5D13 Missense_Mutation p.V273I 0.32 tolerated(0.3) benign(0.074) TCGA-18-3416-01 11 56954786 56954786 G T LRRC55 Missense_Mutation p.E286D 0.18 tolerated(0.15) benign(0.016) TCGA-18-3416-01 11 57135888 57135888 C A P2RX3 Missense_Mutation p.A327E 0.18 deleterious(0) probably_damaging(0.999) TCGA-18-3416-01 11 5969056 5969056 T A OR56A3 Silent p.T160T 0.42 TCGA-18-3416-01 11 61323677 61323677 C G SYT7 Missense_Mutation p.A12P 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.82) TCGA-18-3416-01 11 63885079 63885079 C T FLRT1 Missense_Mutation p.T447M 0.29 deleterious(0.01) possibly_damaging(0.888) TCGA-18-3416-01 11 64027528 64027528 G T PLCB3 Missense_Mutation p.G518V 0.57 tolerated(0.31) benign(0.002) TCGA-18-3416-01 11 6651379 6651379 G A DCHS1 Missense_Mutation p.P1549L 0.50 tolerated(0.05) possibly_damaging(0.889) TCGA-18-3416-01 11 73978304 73978304 G T P4HA3 Missense_Mutation p.P542T 0.36 deleterious(0) probably_damaging(0.991) TCGA-18-3416-01 11 94731244 94731244 G C KDM4D Silent p.R236R 0.42 TCGA-18-3416-01 11 94922999 94922999 C T SESN3 Missense_Mutation p.E157K 0.29 deleterious(0.03) possibly_damaging(0.67) TCGA-18-3416-01 12 101488070 101488070 G T ANO4 Nonsense_Mutation p.E545* 0.13 TCGA-18-3416-01 12 10467402 10467402 G T KLRD1 3'UTR 0.21 TCGA-18-3416-01 12 107103163 107103163 G A RFX4 Missense_Mutation p.A306T 0.18 deleterious(0) probably_damaging(0.943) TCGA-18-3416-01 12 108589946 108589946 C G WSCD2 Missense_Mutation p.R113G 0.21 tolerated(0.07) possibly_damaging(0.745) TCGA-18-3416-01 12 109962291 109962291 G T UBE3B Nonsense_Mutation p.E851* 0.47 TCGA-18-3416-01 12 121615214 121615214 A T P2RX7 Missense_Mutation p.R385W 0.52 deleterious(0) probably_damaging(0.928) TCGA-18-3416-01 12 122217307 122217307 T A TMEM120B 3'UTR 0.44 TCGA-18-3416-01 12 122437833 122437833 G C WDR66 Missense_Mutation p.R1073T 0.20 tolerated(0.33) benign(0.002) TCGA-18-3416-01 12 12630882 12630882 C T DUSP16 Missense_Mutation p.E295K 0.21 deleterious(0) probably_damaging(0.999) TCGA-18-3416-01 12 2058392 2058392 G A DCP1B Missense_Mutation p.L545F 0.40 tolerated(0.51) benign(0.372) TCGA-18-3416-01 12 40692163 40692163 C A LRRK2 Missense_Mutation p.P1072H 0.16 deleterious(0.04) probably_damaging(0.999) TCGA-18-3416-01 12 41330707 41330707 G T CNTN1 Silent p.A370A 0.21 TCGA-18-3416-01 12 44338016 44338016 A T TMEM117 Missense_Mutation p.Q94L 0.41 tolerated(0.1) benign(0.073) TCGA-18-3416-01 12 49442950 49442950 C A KMT2D Nonsense_Mutation p.G1320* 0.59 TCGA-18-3416-01 12 49498256 49498256 G A LMBR1L Missense_Mutation p.S137F 0.36 deleterious(0) probably_damaging(0.966) TCGA-18-3416-01 12 55794584 55794584 C T OR6C65 Missense_Mutation p.S91F 0.41 deleterious_low_confidence(0.01) benign(0.111) TCGA-18-3416-01 12 7942325 7942325 C T NANOG Nonsense_Mutation p.Q39* 0.14 TCGA-18-3416-01 12 93147929 93147929 C T PLEKHG7 Nonsense_Mutation p.Q127* 0.38 TCGA-18-3416-01 13 29008091 29008091 G C FLT1 Silent p.T226T 0.39 TCGA-18-3416-01 13 53419021 53419021 G A PCDH8 Missense_Mutation p.R963C 0.33 deleterious(0) probably_damaging(0.999) TCGA-18-3416-01 13 61987742 61987742 C T PCDH20 Missense_Mutation p.G164S 0.58 tolerated(0.16) benign(0.001) TCGA-18-3416-01 13 73636323 73636323 C A KLF5 Missense_Mutation p.H196N 0.42 tolerated(1) benign(0.098) TCGA-18-3416-01 13 97485376 97485376 A T HS6ST3 Missense_Mutation p.H447L 0.50 tolerated(0.23) benign(0.001) TCGA-18-3416-01 14 101493134 101493134 G T MIR329-1 RNA 0.34 TCGA-18-3416-01 14 105222016 105222016 C G SIVA1 Missense_Mutation p.H56Q 0.35 tolerated(0.21) benign(0.157) TCGA-18-3416-01 14 105413877 105413877 G C AHNAK2 Silent p.A2637A 0.14 TCGA-18-3416-01 14 20295680 20295680 C A OR4N2 Missense_Mutation p.L25I 0.29 tolerated(0.35) benign(0.011) TCGA-18-3416-01 14 21167824 21167824 C A RNASE4 Missense_Mutation p.N98K 0.20 deleterious(0.02) probably_damaging(0.998) TCGA-18-3416-01 14 24731311 24731311 C A TGM1 Missense_Mutation p.R83L 0.52 tolerated(0.25) benign(0.182) TCGA-18-3416-01 14 44975152 44975152 G T FSCB Missense_Mutation p.L347M 0.38 tolerated(0.23) possibly_damaging(0.82) TCGA-18-3416-01 14 52171516 52171516 C G FRMD6 Missense_Mutation p.L141V 0.20 deleterious(0) benign(0.137) TCGA-18-3416-01 14 65417054 65417054 G T RAB15 Missense_Mutation p.S178R 0.40 deleterious(0) benign(0.04) TCGA-18-3416-01 14 76232418 76232418 A G TTLL5 Silent p.P574P 0.26 TCGA-18-3416-01 14 94419793 94419793 G C ASB2 Missense_Mutation p.T180R 0.19 deleterious(0.01) probably_damaging(0.979) TCGA-18-3416-01 14 95570126 95570126 T A DICER1 Missense_Mutation p.N1203Y 0.33 tolerated_low_confidence(0.38) benign(0.109) TCGA-18-3416-01 15 23931540 23931540 G T NDN Silent p.I275I 0.32 TCGA-18-3416-01 15 25427418 25427418 C T SNORD115-6 3'Flank 0.73 TCGA-18-3416-01 15 25446500 25446500 G T SNORD115-17 RNA 0.43 TCGA-18-3416-01 15 25925069 25925069 C A ATP10A Missense_Mutation p.A1307S 0.51 deleterious(0.03) benign(0.187) TCGA-18-3416-01 15 29561233 29561233 T C NDNL2 Missense_Mutation p.D226G 0.30 deleterious(0.02) benign(0.084) TCGA-18-3416-01 15 39910398 39910398 C A FSIP1 Missense_Mutation p.D413Y 0.47 deleterious(0) probably_damaging(0.972) TCGA-18-3416-01 15 41570972 41570972 G T CHP1 Missense_Mutation p.R140L 0.61 deleterious(0.01) benign(0.154) TCGA-18-3416-01 15 41862286 41862286 G A TYRO3 Silent p.T438T 0.68 TCGA-18-3416-01 15 42702687 42702687 C T CAPN3 Missense_Mutation p.A726V 0.45 deleterious(0.03) benign(0.201) TCGA-18-3416-01 15 50152498 50152498 C T ATP8B4 Missense_Mutation p.G1158R 0.57 tolerated(0.37) benign(0.093) TCGA-18-3416-01 15 60648153 60648153 C A ANXA2 Missense_Mutation p.G183C 0.42 deleterious(0) probably_damaging(0.984) TCGA-18-3416-01 15 60919479 60919479 C G RORA Missense_Mutation p.R32T 0.44 tolerated_low_confidence(0.07) benign(0.227) TCGA-18-3416-01 15 69238616 69238616 C A SPESP1 Missense_Mutation p.P248Q 0.44 deleterious(0.05) probably_damaging(0.94) TCGA-18-3416-01 15 75644693 75644693 C T NEIL1 Missense_Mutation p.R195C 0.38 deleterious(0) probably_damaging(0.999) TCGA-18-3416-01 15 85400738 85400738 C G ALPK3 Missense_Mutation p.H1125Q 0.32 tolerated_low_confidence(0.11) benign(0.032) TCGA-18-3416-01 15 89424729 89424729 G A HAPLN3 Missense_Mutation p.R118C 0.29 deleterious(0) probably_damaging(1) TCGA-18-3416-01 15 91528042 91528042 C A PRC1 Nonsense_Mutation p.E9* 0.35 TCGA-18-3416-01 16 1250520 1250520 C T CACNA1H Silent p.N356N 0.22 TCGA-18-3416-01 16 20430773 20430773 C G ACSM5 Intron 0.75 TCGA-18-3416-01 16 2331210 2331210 G T ABCA3 Silent p.R1393R 0.62 TCGA-18-3416-01 16 23607476 23607476 C G NDUFAB1 Missense_Mutation p.G46R 0.20 tolerated(0.26) benign(0.014) TCGA-18-3416-01 16 27818807 27818807 C T GSG1L Splice_Site p.X300_splice 0.17 TCGA-18-3416-01 16 3293075 3293075 G A MEFV 3'UTR 0.52 TCGA-18-3416-01 16 50744691 50744691 A T NOD2 Missense_Mutation p.D290V 0.47 deleterious(0.05) benign(0.045) TCGA-18-3416-01 16 58036523 58036523 A G USB1 Missense_Mutation p.N80S 0.38 deleterious(0.02) possibly_damaging(0.812) TCGA-18-3416-01 16 80718954 80718954 C G CDYL2 Missense_Mutation p.G33R 0.59 deleterious(0.01) probably_damaging(1) TCGA-18-3416-01 17 10215277 10215277 C T MYH13 Silent p.E1494E 0.17 TCGA-18-3416-01 17 1538677 1538678 - T SCARF1 Frame_Shift_Ins p.A623Dfs*6 0.67 TCGA-18-3416-01 17 16526040 16526040 T C ZNF624 Silent p.G720G 0.58 TCGA-18-3416-01 17 39165091 39165091 C G KRTAP3-1 Missense_Mutation p.G79A 0.27 deleterious_low_confidence(0.02) probably_damaging(0.923) TCGA-18-3416-01 17 39305582 39305582 G T KRTAP4-5 Nonsense_Mutation p.C146* 0.27 TCGA-18-3416-01 17 48917672 48917672 G T WFIKKN2 Missense_Mutation p.Q341H 0.27 tolerated(0.48) possibly_damaging(0.744) TCGA-18-3416-01 17 56350171 56350171 A T MPO Missense_Mutation p.M577K 0.32 tolerated(0.54) benign(0.002) TCGA-18-3416-01 17 7415644 7415644 C T POLR2A Silent p.P1491P 0.65 TCGA-18-3416-01 17 74208513 74208513 T A RNF157 Missense_Mutation p.T47S 0.70 tolerated(0.25) benign(0.009) TCGA-18-3416-01 17 7577550 7577550 C - TP53 Frame_Shift_Del p.G244Afs*3 0.38 TCGA-18-3416-01 17 79094857 79094857 G T AATK Missense_Mutation p.P960H 0.73 tolerated(0.05) probably_damaging(0.935) TCGA-18-3416-01 17 79163715 79163715 C A AZI1 Missense_Mutation p.E1056D 0.71 deleterious(0.05) benign(0.057) TCGA-18-3416-01 17 8656492 8656492 G A SPDYE4 Silent p.H226H 0.31 TCGA-18-3416-01 18 3215013 3215013 T A MYOM1 Missense_Mutation p.Q70L 0.48 tolerated_low_confidence(0.33) benign(0) TCGA-18-3416-01 18 47799296 47799296 C T MBD1 Silent p.K538K 0.36 TCGA-18-3416-01 18 74649197 74649197 G T ZNF236 Silent p.S1558S 0.56 TCGA-18-3416-01 19 11833187 11833187 G T ZNF823 Missense_Mutation p.Q388K 0.16 deleterious(0) benign(0.14) TCGA-18-3416-01 19 12830132 12830132 G C TNPO2 Missense_Mutation p.Q40E 0.20 tolerated(0.43) benign(0.001) TCGA-18-3416-01 19 13397689 13397689 G C CACNA1A Missense_Mutation p.L1061V 0.44 benign(0.021) TCGA-18-3416-01 19 15547688 15547688 C A WIZ Missense_Mutation p.R153L 0.27 tolerated(0.35) benign(0.003) TCGA-18-3416-01 19 16506271 16506271 G C EPS15L1 Missense_Mutation p.P600R 0.18 deleterious(0.04) probably_damaging(0.921) TCGA-18-3416-01 19 20308008 20308008 T C ZNF486 Silent p.F163F 0.20 TCGA-18-3416-01 19 22154698 22154698 T A ZNF208 Missense_Mutation p.E1046D 0.39 tolerated(0.43) benign(0.026) TCGA-18-3416-01 19 22575785 22575785 T C ZNF98 Splice_Site p.X85_splice 0.22 TCGA-18-3416-01 19 22939259 22939259 G C ZNF99 3'Flank 0.31 TCGA-18-3416-01 19 41066342 41066342 C T SPTBN4 Intron 0.73 TCGA-18-3416-01 19 41888897 41888898 - A TMEM91 Intron 0.34 TCGA-18-3416-01 19 48789340 48789340 T A ZNF114 Silent p.R153R 0.47 TCGA-18-3416-01 19 51274370 51274370 C T GPR32 Silent p.A171A 0.40 TCGA-18-3416-01 19 51470440 51470440 G C KLK6 Missense_Mutation p.A61G 0.55 deleterious(0) probably_damaging(1) TCGA-18-3416-01 19 51857763 51857763 C G ETFB Missense_Mutation p.E44Q 0.43 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-18-3416-01 19 53994668 53994668 G A ZNF813 Silent p.Q394Q 0.17 TCGA-18-3416-01 19 56952833 56952833 T A ZNF667 Missense_Mutation p.S511C 0.58 tolerated(0.06) probably_damaging(0.996) TCGA-18-3416-01 19 57649928 57649928 G T ZIM3 Silent p.T18T 0.51 TCGA-18-3416-01 19 6906479 6906479 G T EMR1 Missense_Mutation p.D329Y 0.36 deleterious(0.01) benign(0.333) TCGA-18-3416-01 19 8045966 8045966 C A ELAVL1 Splice_Site p.X92_splice 0.48 TCGA-18-3416-01 19 8156451 8156451 G A FBN3 Missense_Mutation p.P1977S 0.37 deleterious(0.03) possibly_damaging(0.777) TCGA-18-3416-01 19 8161784 8161784 C G FBN3 Silent p.S1798S 0.22 TCGA-18-3416-01 19 9089069 9089069 G C MUC16 Missense_Mutation p.L916V 0.14 unknown(0) TCGA-18-3416-01 19 9297407 9297407 G T OR7D2 3'UTR 0.45 TCGA-18-3416-01 1 101460686 101460686 C A DPH5 Missense_Mutation p.Q170H 0.32 deleterious(0.04) possibly_damaging(0.841) TCGA-18-3416-01 1 107600083 107600083 G A PRMT6 Missense_Mutation p.R249Q 0.35 tolerated(0.44) benign(0.004) TCGA-18-3416-01 1 112999276 112999276 G A CTTNBP2NL Missense_Mutation p.E388K 0.22 deleterious(0.01) probably_damaging(0.993) TCGA-18-3416-01 1 114949569 114949569 A C TRIM33 Silent p.A804A 0.20 TCGA-18-3416-01 1 11589653 11589653 G C PTCHD2 Missense_Mutation p.G947R 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.712) TCGA-18-3416-01 1 1325625 1325625 G C CCNL2 Missense_Mutation p.P331A 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-18-3416-01 1 1325636 1325636 G A CCNL2 Missense_Mutation p.S327L 0.10 tolerated(0.12) benign(0.079) TCGA-18-3416-01 1 144886153 144886153 C T PDE4DIP Silent p.L1027L 0.15 TCGA-18-3416-01 1 149879602 149879602 G T SV2A Missense_Mutation p.F512L 0.29 tolerated(0.68) benign(0.043) TCGA-18-3416-01 1 152057617 152057617 A T TCHHL1 Silent p.S847S 0.37 TCGA-18-3416-01 1 152636867 152636867 C T LCE2D Missense_Mutation p.P96S 0.29 tolerated_low_confidence(0.93) unknown(0) TCGA-18-3416-01 1 154514508 154514508 G T TDRD10 Missense_Mutation p.E126D 0.21 tolerated(0.06) benign(0.223) TCGA-18-3416-01 1 155148375 155148375 T C TRIM46 Missense_Mutation p.Y113H 0.30 tolerated(0.25) benign(0.063) TCGA-18-3416-01 1 156213520 156213520 G A PAQR6 3'UTR 0.24 TCGA-18-3416-01 1 158301247 158301247 C G CD1B 5'UTR 0.42 TCGA-18-3416-01 1 160109474 160109474 C A ATP1A2 Missense_Mutation p.A962D 0.28 deleterious(0) probably_damaging(0.939) TCGA-18-3416-01 1 161042499 161042499 C A PVRL4 Missense_Mutation p.K495N 0.38 deleterious(0) probably_damaging(0.998) TCGA-18-3416-01 1 166963298 166963298 A T MAEL Missense_Mutation p.Q172L 0.29 deleterious(0) probably_damaging(0.918) TCGA-18-3416-01 1 173835447 173835447 C T ZBTB37 5'Flank 0.28 TCGA-18-3416-01 1 175092614 175092614 C A TNN Missense_Mutation p.A910D 0.28 deleterious(0) probably_damaging(0.995) TCGA-18-3416-01 1 175334299 175334299 C G TNR Missense_Mutation p.D812H 0.36 deleterious(0.01) probably_damaging(0.991) TCGA-18-3416-01 1 181767670 181767670 G C CACNA1E Silent p.P2214P 0.10 TCGA-18-3416-01 1 196967353 196967353 C A CFHR5 Missense_Mutation p.R356S 0.35 tolerated(1) benign(0.009) TCGA-18-3416-01 1 202700083 202700083 G T KDM5B Missense_Mutation p.A1377D 0.38 tolerated(0.63) benign(0.043) TCGA-18-3416-01 1 20827489 20827489 T A MUL1 Silent p.T251T 0.15 TCGA-18-3416-01 1 210334198 210334198 A G SYT14 Silent p.L557L 0.23 TCGA-18-3416-01 1 223568305 223568305 G T C1orf65 Missense_Mutation p.E496D 0.39 deleterious(0.04) possibly_damaging(0.521) TCGA-18-3416-01 1 226556023 226556023 C A PARP1 Splice_Site p.X719_splice 0.42 TCGA-18-3416-01 1 227079536 227079536 G A PSEN2 Missense_Mutation p.E355K 0.31 tolerated(0.17) benign(0.292) TCGA-18-3416-01 1 227400857 227400857 C - CDC42BPA Frame_Shift_Del p.E112Kfs*3 0.26 TCGA-18-3416-01 1 228473926 228473926 A G OBSCN Missense_Mutation p.N3480S 0.42 benign(0.133) TCGA-18-3416-01 1 23236992 23236992 G A EPHB2 Missense_Mutation p.G875S 0.28 tolerated(1) benign(0.004) TCGA-18-3416-01 1 232581528 232581528 A G SIPA1L2 Missense_Mutation p.C1034R 0.34 deleterious(0) probably_damaging(0.998) TCGA-18-3416-01 1 240497432 240497432 C A FMN2 Silent p.L1556L 0.53 TCGA-18-3416-01 1 24418729 24418729 G T MYOM3 Silent p.L389L 0.20 TCGA-18-3416-01 1 247492858 247492858 C A ZNF496 Missense_Mutation p.R8L 0.21 deleterious_low_confidence(0.04) benign(0.177) TCGA-18-3416-01 1 247588563 247588563 G A NLRP3 Silent p.L606L 0.22 TCGA-18-3416-01 1 247614643 247614643 G C OR2B11 Silent p.P214P 0.32 TCGA-18-3416-01 1 247655290 247655290 C A OR2W5 RNA 0.35 TCGA-18-3416-01 1 248059311 248059311 C A OR2W3 Nonsense_Mutation p.C141* 0.47 TCGA-18-3416-01 1 32138087 32138087 C A COL16A1 Missense_Mutation p.G1012V 0.51 unknown(0) TCGA-18-3416-01 1 36636743 36636743 G T MAP7D1 Missense_Mutation p.G73V 0.14 possibly_damaging(0.689) TCGA-18-3416-01 1 50957443 50957443 T C FAF1 Missense_Mutation p.R509G 0.18 tolerated(0.06) possibly_damaging(0.476) TCGA-18-3416-01 1 52821867 52821867 T G CC2D1B Missense_Mutation p.Q688P 0.40 tolerated(0.1) possibly_damaging(0.623) TCGA-18-3416-01 1 57333307 57333307 G A C8A Missense_Mutation p.A35T 0.17 tolerated(0.42) benign(0.001) TCGA-18-3416-01 1 57378134 57378134 G T C8A Missense_Mutation p.R480L 0.36 tolerated(0.22) benign(0.142) TCGA-18-3416-01 1 62675520 62675520 A T L1TD1 Silent p.L358L 0.16 TCGA-18-3416-01 1 66379032 66379032 C G PDE4B Missense_Mutation p.A12G 0.32 tolerated_low_confidence(0.55) benign(0.01) TCGA-18-3416-01 1 75037158 75037158 C T C1orf173 Silent p.G1412G 0.24 TCGA-18-3416-01 1 75065401 75065401 A C C1orf173 Missense_Mutation p.S568R 0.41 deleterious(0) probably_damaging(0.973) TCGA-18-3416-01 1 75107029 75107029 T A C1orf173 Missense_Mutation p.S144C 0.13 deleterious(0.03) benign(0.127) TCGA-18-3416-01 1 78097971 78097971 C A ZZZ3 Missense_Mutation p.V357F 0.24 tolerated(0.59) benign(0.002) TCGA-18-3416-01 1 7995201 7995201 C A TNFRSF9 Missense_Mutation p.C139F 0.15 deleterious(0) probably_damaging(0.996) TCGA-18-3416-01 1 89414865 89414865 T A CCBL2 Missense_Mutation p.R350S 0.33 deleterious(0) probably_damaging(1) TCGA-18-3416-01 1 89523674 89523674 C T GBP1 Splice_Site p.X292_splice 0.47 TCGA-18-3416-01 1 89618462 89618462 T A GBP7 Splice_Site p.X107_splice 0.43 TCGA-18-3416-01 1 93070917 93070917 T C EVI5 Missense_Mutation p.S657G 0.33 tolerated(0.12) benign(0.006) TCGA-18-3416-01 1 93602335 93602335 G T MTF2 Missense_Mutation p.Q511H 0.18 tolerated(0.14) benign(0.005) TCGA-18-3416-01 1 977425 977425 G T AGRN Missense_Mutation p.G423W 0.77 deleterious(0) probably_damaging(0.995) TCGA-18-3416-01 20 18576691 18576691 G T DTD1 Missense_Mutation p.S59I 0.64 deleterious(0.01) possibly_damaging(0.45) TCGA-18-3416-01 20 20269413 20269413 G A C20orf26 Missense_Mutation p.R986K 0.60 tolerated(0.17) benign(0.161) TCGA-18-3416-01 20 23424661 23424661 C G CSTL1 Missense_Mutation p.Q104E 0.67 tolerated(0.16) probably_damaging(0.997) TCGA-18-3416-01 20 2597739 2597739 A T TMC2 Silent p.P654P 0.50 TCGA-18-3416-01 20 50408097 50408097 C A SALL4 Missense_Mutation p.G309W 0.38 deleterious(0) probably_damaging(1) TCGA-18-3416-01 21 10944758 10944758 T A TPTE Missense_Mutation p.N159I 0.16 deleterious(0) probably_damaging(0.998) TCGA-18-3416-01 21 33371371 33371371 G T HUNK Missense_Mutation p.R673S 0.33 deleterious_low_confidence(0) possibly_damaging(0.873) TCGA-18-3416-01 21 46086794 46086794 T C KRTAP12-2 Missense_Mutation p.T4A 0.53 tolerated(0.07) unknown(0) TCGA-18-3416-01 22 26937263 26937263 C A TPST2 Missense_Mutation p.A112S 0.38 tolerated(0.74) benign(0.008) TCGA-18-3416-01 22 31979915 31979916 AG - SFI1 Frame_Shift_Del p.E436Afs*118 0.12 TCGA-18-3416-01 22 36537238 36537238 T A APOL3 3'UTR 0.41 TCGA-18-3416-01 22 37397983 37397983 C T TEX33 Silent p.Q128Q 0.29 TCGA-18-3416-01 22 38084982 38084982 G T NOL12 Missense_Mutation p.G122W 0.40 deleterious(0) probably_damaging(0.994) TCGA-18-3416-01 22 42172170 42172170 T G MEI1 Missense_Mutation p.L870R 0.19 deleterious(0) probably_damaging(0.998) TCGA-18-3416-01 22 46327162 46327162 C T WNT7B Missense_Mutation p.S129N 0.17 deleterious(0.04) possibly_damaging(0.593) TCGA-18-3416-01 2 113514469 113514469 C A CKAP2L Missense_Mutation p.G160V 0.20 tolerated(0.12) benign(0.002) TCGA-18-3416-01 2 118579815 118579815 G C DDX18 Missense_Mutation p.K348N 0.20 tolerated(0.06) benign(0.069) TCGA-18-3416-01 2 141359117 141359117 A T LRP1B Silent p.T2297T 0.25 TCGA-18-3416-01 2 143798134 143798134 G T KYNU Silent p.P393P 0.24 TCGA-18-3416-01 2 152512796 152512796 G C NEB Silent p.V2122V 0.29 TCGA-18-3416-01 2 15770898 15770898 A T DDX1 Splice_Site p.X698_splice 0.49 TCGA-18-3416-01 2 166802149 166802149 C A TTC21B Missense_Mutation p.G105V 0.34 tolerated(0.18) benign(0.003) TCGA-18-3416-01 2 178592803 178592803 C A PDE11A Missense_Mutation p.R629L 0.63 deleterious(0) probably_damaging(0.931) TCGA-18-3416-01 2 179468828 179468828 A G TTN Missense_Mutation p.S18196P 0.07 TCGA-18-3416-01 2 179617883 179617883 C T TTN Missense_Mutation p.R3760K 0.12 TCGA-18-3416-01 2 179654793 179654793 G A TTN Missense_Mutation p.T617I 0.69 TCGA-18-3416-01 2 179742795 179742795 C T CCDC141 Missense_Mutation p.A599T 0.59 tolerated(0.6) benign(0.013) TCGA-18-3416-01 2 186660762 186660762 A C FSIP2 Missense_Mutation p.S3056R 0.20 benign(0.01) TCGA-18-3416-01 2 197672176 197672176 G C C2orf66 Silent p.L115L 0.16 TCGA-18-3416-01 2 201436176 201436176 T C SGOL2 Silent p.A369A 0.21 TCGA-18-3416-01 2 202494079 202494079 T C TMEM237 Missense_Mutation p.Y248C 0.52 deleterious(0.01) benign(0.162) TCGA-18-3416-01 2 209046009 209046009 C A C2orf80 Missense_Mutation p.R76I 0.40 deleterious(0) probably_damaging(0.918) TCGA-18-3416-01 2 209358352 209358352 G T PTH2R Nonsense_Mutation p.G541* 0.21 TCGA-18-3416-01 2 21232877 21232877 T A APOB Missense_Mutation p.H2288L 0.16 benign(0.004) TCGA-18-3416-01 2 228883619 228883619 C A SPHKAP Missense_Mutation p.A651S 0.24 deleterious(0.02) benign(0.434) TCGA-18-3416-01 2 234094557 234094557 G A INPP5D Missense_Mutation p.E770K 0.50 tolerated(0.78) possibly_damaging(0.575) TCGA-18-3416-01 2 234969103 234969103 G T SPP2 Nonsense_Mutation p.E142* 0.36 TCGA-18-3416-01 2 238285988 238285988 C T COL6A3 Splice_Site p.X833_splice 0.53 TCGA-18-3416-01 2 240982214 240982214 C T PRR21 Silent p.T62T 0.31 TCGA-18-3416-01 2 24930637 24930637 G C NCOA1 Silent p.L766L 0.39 TCGA-18-3416-01 2 25468908 25468908 C G DNMT3A Missense_Mutation p.Q485H 0.17 deleterious(0.01) possibly_damaging(0.713) TCGA-18-3416-01 2 32145975 32145975 T A MEMO1 Nonsense_Mutation p.R73* 0.36 TCGA-18-3416-01 2 48040932 48040932 G A FBXO11 Missense_Mutation p.S694F 0.36 deleterious(0.01) probably_damaging(0.975) TCGA-18-3416-01 2 48869555 48869555 C A STON1-GTF2A1L Missense_Mutation p.P792T 0.33 deleterious(0) probably_damaging(0.936) TCGA-18-3416-01 2 49191003 49191003 C T FSHR Silent p.E319E 0.50 TCGA-18-3416-01 2 61475683 61475683 T A USP34 Silent p.T2119T 0.34 TCGA-18-3416-01 2 61622335 61622335 C - USP34 Frame_Shift_Del p.A196Hfs*5 0.17 TCGA-18-3416-01 2 71709007 71709007 A T DYSF Splice_Site p.X50_splice 0.26 TCGA-18-3416-01 2 74275351 74275351 A T TET3 Silent p.S634S 0.14 TCGA-18-3416-01 2 79255403 79255403 G T REG3G 3'UTR 0.37 TCGA-18-3416-01 2 90109065 90109065 G T IGKV6D-41 Missense_Mutation p.Q110H 0.28 deleterious(0.02) benign(0.229) TCGA-18-3416-01 2 90249397 90249397 C G IGKV1D-43 3'Flank 0.25 TCGA-18-3416-01 2 95542369 95542369 A G TEKT4 Missense_Mutation p.Q388R 0.36 tolerated(0.13) benign(0.133) TCGA-18-3416-01 3 100567705 100567705 T A ABI3BP Missense_Mutation p.T464S 0.17 tolerated(0.19) benign(0.02) TCGA-18-3416-01 3 109033356 109033356 C A DPPA2 Splice_Site p.X11_splice 0.25 TCGA-18-3416-01 3 126185161 126185161 G A ZXDC Silent p.C426C 0.48 TCGA-18-3416-01 3 12633208 12633208 G T RAF1 Missense_Mutation p.R398S 0.57 deleterious(0) probably_damaging(0.996) TCGA-18-3416-01 3 151012966 151012966 G C GPR87 Nonsense_Mutation p.S23* 0.08 TCGA-18-3416-01 3 158543848 158543848 C A MFSD1 Missense_Mutation p.Q494K 0.10 tolerated(0.68) benign(0.002) TCGA-18-3416-01 3 164906744 164906744 G T SLITRK3 Silent p.A625A 0.64 TCGA-18-3416-01 3 164906901 164906901 A T SLITRK3 Missense_Mutation p.F573Y 0.77 deleterious(0) benign(0.034) TCGA-18-3416-01 3 167159874 167159874 T A SERPINI2 3'UTR 0.86 TCGA-18-3416-01 3 168810787 168810787 G C MECOM Missense_Mutation p.N918K 0.06 tolerated(0.14) benign(0.377) TCGA-18-3416-01 3 176743300 176743300 C G TBL1XR1 Missense_Mutation p.D511H 0.21 deleterious(0) possibly_damaging(0.541) TCGA-18-3416-01 3 180320739 180320739 G T TTC14 Silent p.L74L 0.83 TCGA-18-3416-01 3 184646261 184646262 CT - VPS8 Frame_Shift_Del p.A885Gfs*7 0.10 TCGA-18-3416-01 3 186256664 186256664 C A CRYGS Nonsense_Mutation p.E120* 0.11 TCGA-18-3416-01 3 186338633 186338633 C A AHSG Missense_Mutation p.R340S 0.14 tolerated(0.49) benign(0.054) TCGA-18-3416-01 3 39136189 39136189 G C WDR48 Missense_Mutation p.K663N 0.36 deleterious(0) probably_damaging(0.999) TCGA-18-3416-01 3 40085739 40085739 C G MYRIP Silent p.V103V 0.55 TCGA-18-3416-01 3 47465535 47465535 G T SCAP Silent p.G346G 0.38 TCGA-18-3416-01 3 48717141 48717141 G T NCKIPSD Missense_Mutation p.H452Q 0.57 tolerated(0.07) benign(0.222) TCGA-18-3416-01 3 52525432 52525432 C A NISCH Silent p.L1269L 0.50 TCGA-18-3416-01 3 63973883 63973883 A T ATXN7 Missense_Mutation p.H415L 0.41 tolerated(0.22) benign(0.287) TCGA-18-3416-01 4 111470983 111470983 A T ENPEP Missense_Mutation p.Q814H 0.33 deleterious(0) probably_damaging(0.997) TCGA-18-3416-01 4 123122179 123122179 A T KIAA1109 Missense_Mutation p.S466C 0.31 benign(0.004) TCGA-18-3416-01 4 126402738 126402738 C T FAT4 Nonsense_Mutation p.Q4221* 0.21 TCGA-18-3416-01 4 143003250 143003250 G C INPP4B Nonsense_Mutation p.S859* 0.19 TCGA-18-3416-01 4 15437385 15437385 T C C1QTNF7 Silent p.Y13Y 0.50 TCGA-18-3416-01 4 156135450 156135450 C G NPY2R Missense_Mutation p.P120R 0.19 tolerated(0.5) benign(0.008) TCGA-18-3416-01 4 20852248 20852248 C A KCNIP4 Missense_Mutation p.R69L 0.43 deleterious(0) probably_damaging(0.991) TCGA-18-3416-01 4 22750521 22750521 C G GBA3 Missense_Mutation p.A382G 0.53 tolerated(0.45) benign(0.039) TCGA-18-3416-01 4 23886493 23886493 G C PPARGC1A Missense_Mutation p.S39C 0.56 deleterious(0) probably_damaging(0.998) TCGA-18-3416-01 4 2746619 2746619 G A TNIP2 Silent p.Y237Y 0.25 TCGA-18-3416-01 4 49034612 49034612 T A CWH43 Missense_Mutation p.V513E 0.53 deleterious(0) probably_damaging(0.962) TCGA-18-3416-01 4 502758 502758 C T PIGG Silent p.P300P 0.71 TCGA-18-3416-01 4 66197847 66197847 C T EPHA5 Splice_Site p.X951_splice 0.31 TCGA-18-3416-01 4 66467453 66467453 G T EPHA5 Silent p.P272P 0.33 TCGA-18-3416-01 4 73963958 73963958 C G ANKRD17 Missense_Mutation p.R1618T 0.33 benign(0.036) TCGA-18-3416-01 4 84403359 84403359 C G FAM175A Missense_Mutation p.K42N 0.10 deleterious(0.05) probably_damaging(0.928) TCGA-18-3416-01 4 85553014 85553014 G T CDS1 Missense_Mutation p.R208L 0.24 tolerated(1) benign(0.036) TCGA-18-3416-01 4 8609097 8609097 A T CPZ Missense_Mutation p.D391V 0.61 deleterious(0) probably_damaging(1) TCGA-18-3416-01 4 88356326 88356326 G A NUDT9 Missense_Mutation p.A101T 0.21 deleterious(0.03) probably_damaging(0.91) TCGA-18-3416-01 4 90857906 90857906 G C MMRN1 Silent p.L1025L 0.30 TCGA-18-3416-01 5 137514309 137514309 C - BRD8 5'UTR 0.31 TCGA-18-3416-01 5 140208255 140208255 G A PCDHA6 Silent p.G193G 0.48 TCGA-18-3416-01 5 140579746 140579746 C G PCDHB11 Missense_Mutation p.F133L 0.47 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-18-3416-01 5 140590630 140590630 C A PCDHB12 Missense_Mutation p.S717R 0.44 tolerated_low_confidence(0.36) benign(0.002) TCGA-18-3416-01 5 140742084 140742084 A T PCDHGB2 Silent p.G794G 0.51 TCGA-18-3416-01 5 168096832 168096832 T A SLIT3 Missense_Mutation p.Y1431F 0.46 tolerated(0.27) benign(0.005) TCGA-18-3416-01 5 176317909 176317909 A T HK3 Missense_Mutation p.F150I 0.45 deleterious(0) probably_damaging(1) TCGA-18-3416-01 5 179196090 179196090 G T MAML1 Missense_Mutation p.Q657H 0.38 deleterious(0) possibly_damaging(0.895) TCGA-18-3416-01 5 37293025 37293025 C T NUP155 Silent p.L1331L 0.20 TCGA-18-3416-01 5 40852638 40852638 C A CARD6 Missense_Mutation p.Q402K 0.42 tolerated(0.05) benign(0.115) TCGA-18-3416-01 5 41172358 41172358 G T C6 Nonsense_Mutation p.C420* 0.29 TCGA-18-3416-01 5 41382435 41382435 T A PLCXD3 Missense_Mutation p.K102M 0.48 deleterious(0) probably_damaging(0.992) TCGA-18-3416-01 5 41382437 41382437 G A PLCXD3 Silent p.T101T 0.46 TCGA-18-3416-01 5 43506176 43506176 G T C5orf34 Silent p.I202I 0.35 TCGA-18-3416-01 5 45261951 45261951 A T HCN1 3'UTR 0.34 TCGA-18-3416-01 5 54281367 54281367 C A ESM1 5'UTR 0.55 TCGA-18-3416-01 5 71495083 71495083 C T MAP1B Silent p.P1967P 0.60 TCGA-18-3416-01 5 78328550 78328550 G T DMGDH Missense_Mutation p.P493T 0.48 deleterious(0) probably_damaging(0.992) TCGA-18-3416-01 5 80554960 80554960 C T CKMT2 Nonsense_Mutation p.R301* 0.47 TCGA-18-3416-01 6 10894337 10894338 TT G SYCP2L Frame_Shift_Del p.F79Cfs*8 0.39 TCGA-18-3416-01 6 108984655 108984655 C T FOXO3 Intron 0.10 TCGA-18-3416-01 6 146351083 146351083 G T GRM1 Missense_Mutation p.G144C 0.66 tolerated(0.06) benign(0.071) TCGA-18-3416-01 6 146755144 146755144 C G GRM1 Missense_Mutation p.L933V 0.48 tolerated_low_confidence(0.08) possibly_damaging(0.507) TCGA-18-3416-01 6 148711341 148711341 C T SASH1 Silent p.D76D 0.26 TCGA-18-3416-01 6 152665276 152665276 G T SYNE1 Silent p.V4055V 0.66 TCGA-18-3416-01 6 152708431 152708431 T A SYNE1 Nonsense_Mutation p.K2755* 0.55 TCGA-18-3416-01 6 152757184 152757184 T G SYNE1 Missense_Mutation p.K1401T 0.12 probably_damaging(0.997) TCGA-18-3416-01 6 158327175 158327175 G A SNX9 Silent p.A212A 0.17 TCGA-18-3416-01 6 36483123 36483123 C T STK38 Missense_Mutation p.D221N 0.50 deleterious(0) probably_damaging(0.986) TCGA-18-3416-01 6 39836641 39836641 G T DAAM2 Missense_Mutation p.D269Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-18-3416-01 6 55684595 55684595 G A BMP5 Nonsense_Mutation p.R181* 0.40 TCGA-18-3416-01 6 56426228 56426228 G C DST Missense_Mutation p.Q2107E 0.46 possibly_damaging(0.511) TCGA-18-3416-01 6 56462639 56462639 C A DST Nonsense_Mutation p.G1409* 0.47 TCGA-18-3416-01 6 70900066 70900066 G T COL19A1 Missense_Mutation p.E1025D 0.37 deleterious(0.01) probably_damaging(0.992) TCGA-18-3416-01 6 90605195 90605195 C T GJA10 Silent p.S336S 0.39 TCGA-18-3416-01 6 99997415 99997415 G A CCNC Silent p.C189C 0.17 TCGA-18-3416-01 7 100151098 100151098 C G AGFG2 Nonsense_Mutation p.S187* 0.14 TCGA-18-3416-01 7 100677488 100677488 G C MUC17 Missense_Mutation p.D931H 0.33 unknown(0) TCGA-18-3416-01 7 102585004 102585004 A G LRRC17 Missense_Mutation p.R426G 0.16 tolerated_low_confidence(0.11) benign(0) TCGA-18-3416-01 7 103180820 103180820 G C RELN Missense_Mutation p.L2252V 0.38 tolerated(0.59) benign(0.085) TCGA-18-3416-01 7 103205825 103205825 G A RELN Missense_Mutation p.P1704S 0.21 tolerated(0.1) probably_damaging(0.999) TCGA-18-3416-01 7 103230190 103230190 A G RELN Missense_Mutation p.L1333P 0.31 deleterious(0) probably_damaging(0.989) TCGA-18-3416-01 7 110764903 110764903 C G LRRN3 Missense_Mutation p.T692R 0.16 tolerated(0.36) benign(0.312) TCGA-18-3416-01 7 113519652 113519652 C G PPP1R3A Missense_Mutation p.E499Q 0.33 tolerated(0.43) benign(0.008) TCGA-18-3416-01 7 123600091 123600091 T A SPAM1 Intron 0.19 TCGA-18-3416-01 7 128371326 128371326 C G FAM71F1 3'UTR 0.25 TCGA-18-3416-01 7 137791988 137791988 C G AKR1D1 Intron 0.27 TCGA-18-3416-01 7 149191131 149191131 C A ZNF746 Nonsense_Mutation p.E119* 0.22 TCGA-18-3416-01 7 154379839 154379839 T A DPP6 Intron 0.28 TCGA-18-3416-01 7 17382640 17382640 G A AHR Silent p.P833P 0.16 TCGA-18-3416-01 7 21550868 21550868 C A SP4 Missense_Mutation p.T779N 0.75 tolerated(0.8) benign(0.001) TCGA-18-3416-01 7 4169550 4169550 G T SDK1 Missense_Mutation p.R1317L 0.57 deleterious(0.03) benign(0.139) TCGA-18-3416-01 7 49842319 49842319 G T VWC2 Nonsense_Mutation p.E237* 0.46 TCGA-18-3416-01 7 5430094 5430094 C G TNRC18 Intron 0.71 TCGA-18-3416-01 7 80108231 80108231 C T GNAT3 Silent p.R129R 0.14 TCGA-18-3416-01 7 92763543 92763543 G A SAMD9L Missense_Mutation p.S581F 0.16 deleterious(0) possibly_damaging(0.504) TCGA-18-3416-01 8 104898026 104898026 G T RIMS2 Missense_Mutation p.R400L 0.31 deleterious_low_confidence(0.01) probably_damaging(0.935) TCGA-18-3416-01 8 113237082 113237083 - T CSMD3 Frame_Shift_Ins p.M3681Nfs*3 0.24 TCGA-18-3416-01 8 118184931 118184931 C G SLC30A8 3'UTR 0.27 TCGA-18-3416-01 8 120940802 120940802 G C DEPTOR Silent p.R95R 0.35 TCGA-18-3416-01 8 12945993 12945993 C T DLC1 Intron 0.46 TCGA-18-3416-01 8 133150161 133150161 C G KCNQ3 Missense_Mutation p.M557I 0.34 deleterious(0.01) benign(0.057) TCGA-18-3416-01 8 139635985 139635985 G - COL22A1 Frame_Shift_Del p.P1254Lfs*174 0.27 TCGA-18-3416-01 8 144406177 144406177 T C TOP1MT Missense_Mutation p.I318V 0.24 deleterious(0.01) probably_damaging(0.961) TCGA-18-3416-01 8 144997715 144997715 G A PLEC Missense_Mutation p.R2265W 0.50 unknown(0) TCGA-18-3416-01 8 20031914 20031914 G C SLC18A1 Missense_Mutation p.R197G 0.46 deleterious(0) possibly_damaging(0.877) TCGA-18-3416-01 8 38297823 38297823 C A FGFR1 Intron 0.40 TCGA-18-3416-01 8 52252201 52252201 T C PXDNL Missense_Mutation p.T1377A 0.31 tolerated(0.61) benign(0.003) TCGA-18-3416-01 8 67970422 67970422 C A COPS5 Missense_Mutation p.G135W 0.36 deleterious(0) probably_damaging(1) TCGA-18-3416-01 8 77767585 77767585 A G ZFHX4 Missense_Mutation p.I2810V 0.24 possibly_damaging(0.811) TCGA-18-3416-01 8 93017415 93017415 G T RUNX1T1 Silent p.T234T 0.31 TCGA-18-3416-01 9 100692888 100692888 T A HEMGN Missense_Mutation p.K263N 0.33 tolerated(0.07) probably_damaging(0.978) TCGA-18-3416-01 9 101980729 101980729 G A ALG2 Silent p.A246A 0.15 TCGA-18-3416-01 9 107331952 107331952 C G OR13C8 Missense_Mutation p.F168L 0.23 tolerated(0.1) probably_damaging(0.998) TCGA-18-3416-01 9 107550224 107550224 C T ABCA1 Missense_Mutation p.G2061S 0.26 deleterious(0) probably_damaging(0.998) TCGA-18-3416-01 9 113241915 113241915 C T SVEP1 Missense_Mutation p.M829I 0.26 benign(0.103) TCGA-18-3416-01 9 115806333 115806333 C A ZFP37 Missense_Mutation p.D189Y 0.39 deleterious(0) possibly_damaging(0.838) TCGA-18-3416-01 9 124083615 124083615 G T GSN Missense_Mutation p.D472Y 0.35 deleterious(0) possibly_damaging(0.901) TCGA-18-3416-01 9 130287409 130287409 T C FAM129B Missense_Mutation p.I117V 0.23 tolerated(0.24) benign(0.169) TCGA-18-3416-01 9 131287581 131287581 G C GLE1 Missense_Mutation p.K336N 0.37 deleterious(0.01) possibly_damaging(0.821) TCGA-18-3416-01 9 135202449 135202449 C A SETX Missense_Mutation p.M1512I 0.25 tolerated(0.57) benign(0.001) TCGA-18-3416-01 9 19049819 19049819 G A RRAGA Silent p.G54G 0.62 TCGA-18-3416-01 9 312050 312050 C T DOCK8 Missense_Mutation p.R209W 0.63 deleterious(0.03) possibly_damaging(0.816) TCGA-18-3416-01 9 3270516 3270516 A C RFX3 Missense_Mutation p.S404R 0.72 tolerated(0.3) benign(0.017) TCGA-18-3416-01 9 6014019 6014019 G A RANBP6 Missense_Mutation p.T530I 0.65 deleterious(0.03) possibly_damaging(0.61) TCGA-18-3416-01 9 77431640 77431640 C G TRPM6 Missense_Mutation p.W418S 0.29 deleterious(0) probably_damaging(0.999) TCGA-18-3416-01 9 79259819 79259819 G C PRUNE2 Missense_Mutation p.T2855R 0.38 deleterious(0) possibly_damaging(0.821) TCGA-18-3416-01 9 84610038 84610038 T C SPATA31D1 Silent p.F1551F 0.29 TCGA-18-3416-01 9 97844894 97844894 G T C9orf3 Missense_Mutation p.S786I 0.42 deleterious(0) possibly_damaging(0.892) TCGA-18-3416-01 X 102968777 102968777 G T TMEM31 Nonsense_Mutation p.G120* 0.74 TCGA-18-3416-01 X 118116786 118116786 A T LONRF3 Silent p.A313A 0.64 TCGA-18-3416-01 X 125685298 125685298 A T DCAF12L1 Missense_Mutation p.Y432N 0.59 deleterious(0) probably_damaging(0.999) TCGA-18-3416-01 X 155232571 155232571 G T IL9R Missense_Mutation p.G10V 0.17 deleterious(0) probably_damaging(0.988) TCGA-18-3416-01 X 27998521 27998521 C A DCAF8L1 Missense_Mutation p.V311L 0.55 deleterious(0.04) benign(0.225) TCGA-18-3416-01 X 34961693 34961693 G A FAM47B Missense_Mutation p.V249M 0.61 tolerated(0.2) benign(0.006) TCGA-18-3416-01 X 49957417 49957417 G A AKAP4 Silent p.C649C 0.70 TCGA-18-3416-01 X 82763671 82763671 C T POU3F4 Silent p.A113A 0.75 TCGA-18-3416-01 Y 4924872 4924872 G T PCDH11Y Missense_Mutation p.R3M 0.45 tolerated_low_confidence(0.09) possibly_damaging(0.702) TCGA-18-3417-01 10 102089039 102089039 C A PKD2L1 Missense_Mutation p.R93L 0.35 deleterious(0) possibly_damaging(0.644) TCGA-18-3417-01 10 135126389 135126389 G T ZNF511 3'UTR 0.43 TCGA-18-3417-01 10 15296787 15296787 C A FAM171A1 Silent p.T170T 0.11 TCGA-18-3417-01 10 15600085 15600085 A C ITGA8 Silent p.P918P 0.13 TCGA-18-3417-01 10 16737123 16737123 T A RSU1 Silent p.V210V 0.37 TCGA-18-3417-01 10 25840014 25840014 G C GPR158 Missense_Mutation p.R505T 0.14 deleterious(0) probably_damaging(0.999) TCGA-18-3417-01 10 27507019 27507019 T C ACBD5 Missense_Mutation p.Q240R 0.16 tolerated(0.27) benign(0.36) TCGA-18-3417-01 10 29079396 29079396 C A LINC00837 RNA 0.20 TCGA-18-3417-01 10 38343954 38343954 A G ZNF33A Missense_Mutation p.Y301C 0.17 tolerated(0.21) benign(0.005) TCGA-18-3417-01 10 47747062 47747062 A T ANXA8L2 5'UTR 0.22 TCGA-18-3417-01 10 50723928 50723928 G T ERCC6-PGBD3 Nonsense_Mutation p.C879* 0.22 TCGA-18-3417-01 10 50723929 50723929 C T ERCC6-PGBD3 Missense_Mutation p.C879Y 0.22 tolerated_low_confidence(0.07) unknown(0) TCGA-18-3417-01 10 50957775 50957775 G A OGDHL Silent p.D328D 0.47 TCGA-18-3417-01 10 52390242 52390242 G T RP11-50E11.3 RNA 0.41 TCGA-18-3417-01 10 61574417 61574417 C T CCDC6 Missense_Mutation p.E227K 0.22 deleterious(0) probably_damaging(0.998) TCGA-18-3417-01 10 74034470 74034470 G C DDIT4 Missense_Mutation p.G75R 0.35 tolerated(0.51) benign(0.076) TCGA-18-3417-01 10 89692898 89692898 A C PTEN Missense_Mutation p.K128Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-18-3417-01 10 94834612 94834612 T C CYP26A1 Missense_Mutation p.L164P 0.15 deleterious(0) probably_damaging(0.968) TCGA-18-3417-01 10 95129517 95129517 T - MYOF Frame_Shift_Del p.N825Tfs*12 0.16 TCGA-18-3417-01 11 102592384 102592384 G T MMP8 Missense_Mutation p.Q153K 0.27 tolerated(0.41) benign(0.003) TCGA-18-3417-01 11 107309855 107309855 G C CWF19L2 Missense_Mutation p.L209V 0.08 deleterious(0) probably_damaging(0.999) TCGA-18-3417-01 11 108170460 108170460 G T ATM Missense_Mutation p.L1675F 0.10 deleterious(0) probably_damaging(0.984) TCGA-18-3417-01 11 11969555 11969555 T G USP47 Missense_Mutation p.F984C 0.12 tolerated(0.05) possibly_damaging(0.859) TCGA-18-3417-01 11 123516345 123516345 T A SCN3B Missense_Mutation p.T57S 0.17 tolerated(0.74) benign(0.004) TCGA-18-3417-01 11 125523664 125523664 G T CHEK1 Missense_Mutation p.R419S 0.14 deleterious(0) possibly_damaging(0.878) TCGA-18-3417-01 11 126075365 126075365 G A RPUSD4 Missense_Mutation p.T265I 0.28 deleterious(0) probably_damaging(0.999) TCGA-18-3417-01 11 128709634 128709635 - T KCNJ1 Frame_Shift_Ins p.R188Tfs*28 0.14 TCGA-18-3417-01 11 15133986 15133986 C A INSC 5'UTR 0.21 TCGA-18-3417-01 11 31531381 31531381 C T ELP4 Missense_Mutation p.A17V 0.13 tolerated_low_confidence(1) benign(0) TCGA-18-3417-01 11 47593286 47593286 G C PTPMT1 3'UTR 0.10 TCGA-18-3417-01 11 49168457 49168457 C T FOLH1 Missense_Mutation p.G702R 0.08 deleterious(0) probably_damaging(1) TCGA-18-3417-01 11 5020437 5020437 G T OR51L1 Missense_Mutation p.M75I 0.15 tolerated(0.05) benign(0.073) TCGA-18-3417-01 11 5153675 5153675 G T OR52A5 Silent p.A66A 0.15 TCGA-18-3417-01 11 55038255 55038255 A G TRIM48 3'UTR 0.14 TCGA-18-3417-01 11 55541644 55541644 C T OR5D13 Missense_Mutation p.A244V 0.13 deleterious(0.01) possibly_damaging(0.58) TCGA-18-3417-01 11 55587827 55587827 C A OR5D18 Missense_Mutation p.T241N 0.07 deleterious(0) probably_damaging(1) TCGA-18-3417-01 11 55657498 55657498 G A TRIM51 Missense_Mutation p.S281N 0.16 deleterious(0.03) benign(0.024) TCGA-18-3417-01 11 55927594 55927594 G T OR8K5 Missense_Mutation p.A67D 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-18-3417-01 11 56113543 56113543 C A OR8K1 Missense_Mutation p.T10K 0.19 tolerated_low_confidence(0.08) benign(0.035) TCGA-18-3417-01 11 57319921 57319921 G T UBE2L6 Missense_Mutation p.D124E 0.12 tolerated(0.49) benign(0.001) TCGA-18-3417-01 11 60557884 60557884 C T MS4A10 Nonsense_Mutation p.Q26* 0.17 TCGA-18-3417-01 11 62490109 62490109 C G HNRNPUL2 Missense_Mutation p.Q353H 0.11 deleterious(0) possibly_damaging(0.879) TCGA-18-3417-01 11 65062070 65062070 C T POLA2 Silent p.F469F 0.09 TCGA-18-3417-01 11 65648993 65648993 T G CTSW Splice_Site p.X96_splice 0.14 TCGA-18-3417-01 11 66191103 66191103 C T NPAS4 Missense_Mutation p.T288I 0.11 deleterious(0.02) benign(0.015) TCGA-18-3417-01 11 67818063 67818063 G T TCIRG1 Silent p.V782V 0.17 TCGA-18-3417-01 11 68748106 68748106 G A MRGPRD Missense_Mutation p.T117M 0.14 tolerated(0.1) probably_damaging(0.971) TCGA-18-3417-01 11 6943116 6943116 C A OR2D3 Missense_Mutation p.T295K 0.09 deleterious(0.01) benign(0.315) TCGA-18-3417-01 11 7059857 7059857 G T NLRP14 Missense_Mutation p.G14W 0.12 deleterious(0) probably_damaging(1) TCGA-18-3417-01 11 7818326 7818326 A G OR5P2 Missense_Mutation p.M55T 0.16 deleterious(0) possibly_damaging(0.458) TCGA-18-3417-01 12 120622646 120622646 A C GCN1L1 Missense_Mutation p.L56V 0.06 possibly_damaging(0.675) TCGA-18-3417-01 12 13214634 13214634 G C KIAA1467 Missense_Mutation p.A220P 0.07 tolerated(0.25) possibly_damaging(0.649) TCGA-18-3417-01 12 133435727 133435727 C A CHFR Missense_Mutation p.A292S 0.46 tolerated(0.56) benign(0.004) TCGA-18-3417-01 12 15742454 15742454 A C PTPRO Missense_Mutation p.H1159P 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-18-3417-01 12 21327532 21327532 T G SLCO1B1 Missense_Mutation p.F83C 0.14 deleterious(0) probably_damaging(0.999) TCGA-18-3417-01 12 250584 250584 C A IQSEC3 Intron 0.23 TCGA-18-3417-01 12 26628297 26628297 C G ITPR2 Missense_Mutation p.D2092H 0.07 tolerated(0.05) benign(0.006) TCGA-18-3417-01 12 40265601 40265601 T C SLC2A13 Silent p.A399A 0.19 TCGA-18-3417-01 12 52841594 52841594 G T KRT6B Silent p.T464T 0.37 TCGA-18-3417-01 12 52883799 52883799 G T KRT6A Silent p.T377T 0.40 TCGA-18-3417-01 12 55759232 55759232 T C OR6C75 Missense_Mutation p.L113P 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-18-3417-01 12 5853393 5853393 C G ANO2 Silent p.G423G 0.63 TCGA-18-3417-01 12 6707131 6707131 C T CHD4 Silent p.E607E 0.12 TCGA-18-3417-01 12 68707531 68707531 G C MDM1 Nonsense_Mutation p.S501* 0.39 TCGA-18-3417-01 12 6923530 6923530 C A CD4 Intron 0.57 TCGA-18-3417-01 12 72956688 72956688 C G TRHDE Missense_Mutation p.T592R 0.41 deleterious(0) probably_damaging(0.957) TCGA-18-3417-01 12 7947352 7947352 T C NANOG Silent p.L193L 0.53 TCGA-18-3417-01 12 99898341 99898341 C G ANKS1B Missense_Mutation p.E451Q 0.51 tolerated(0.06) possibly_damaging(0.701) TCGA-18-3417-01 13 103718330 103718330 A G SLC10A2 Silent p.F90F 0.10 TCGA-18-3417-01 13 110804799 110804799 A T COL4A1 Missense_Mutation p.C1604S 0.20 possibly_damaging(0.702) TCGA-18-3417-01 13 26434350 26434350 G T ATP8A2 Missense_Mutation p.G992C 0.10 deleterious(0) probably_damaging(1) TCGA-18-3417-01 13 32711022 32711022 G T FRY Silent p.L364L 0.13 TCGA-18-3417-01 13 46917513 46917513 A G KIAA0226L 3'UTR 0.35 TCGA-18-3417-01 13 61986903 61986903 T C PCDH20 Silent p.E443E 0.20 TCGA-18-3417-01 13 61986932 61986932 C A PCDH20 Nonsense_Mutation p.E434* 0.27 TCGA-18-3417-01 13 72255959 72255959 C A DACH1 Missense_Mutation p.G313V 0.12 probably_damaging(0.986) TCGA-18-3417-01 14 106110201 106110201 C T IGHG2 Silent p.T139T 0.28 TCGA-18-3417-01 14 106586173 106586173 C A IGHV3-13 Silent p.L104L 0.29 TCGA-18-3417-01 14 20296181 20296181 A G OR4N2 Missense_Mutation p.T192A 0.08 deleterious(0.01) benign(0.11) TCGA-18-3417-01 14 20404520 20404520 G T OR4K1 Missense_Mutation p.G232V 0.12 deleterious(0) probably_damaging(0.962) TCGA-18-3417-01 14 21238290 21238290 A T EDDM3B Splice_Site 0.11 TCGA-18-3417-01 14 23894206 23894206 G A MYH7 Silent p.N817N 0.25 TCGA-18-3417-01 14 31058674 31058674 A G G2E3 Missense_Mutation p.N74S 0.19 tolerated(0.29) benign(0.027) TCGA-18-3417-01 14 42360885 42360885 C A LRFN5 Silent p.T606T 0.18 TCGA-18-3417-01 14 58471341 58471341 G A C14orf37 3'UTR 0.22 TCGA-18-3417-01 14 58820393 58820393 A G ARID4A Missense_Mutation p.K558R 0.23 tolerated(0.47) benign(0.007) TCGA-18-3417-01 14 58915141 58915141 C T KIAA0586 Silent p.S350S 0.26 TCGA-18-3417-01 14 94545633 94545633 T A DDX24 Silent p.P152P 0.17 TCGA-18-3417-01 14 95033443 95033443 C A SERPINA4 Silent p.P262P 0.12 TCGA-18-3417-01 15 22369097 22369097 A G OR4M2 Silent p.L174L 0.06 TCGA-18-3417-01 15 22868847 22868847 C T TUBGCP5 Missense_Mutation p.H907Y 0.31 tolerated(0.08) possibly_damaging(0.549) TCGA-18-3417-01 15 23335651 23335651 A T HERC2P2 RNA 0.29 TCGA-18-3417-01 15 25322260 25322260 T C SNORD116-12 RNA 0.08 TCGA-18-3417-01 15 34032171 34032171 G A RYR3 Missense_Mutation p.D2599N 0.30 benign(0.191) TCGA-18-3417-01 15 34547527 34547540 CAGAGGCCAACAGC - SLC12A6 Frame_Shift_Del p.A267Lfs*18 0.36 TCGA-18-3417-01 15 35083437 35083437 C A ACTC1 Missense_Mutation p.D290Y 0.11 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-18-3417-01 15 43690255 43690255 A G TUBGCP4 Silent p.R432R 0.38 TCGA-18-3417-01 15 72020962 72020962 G T THSD4 Nonsense_Mutation p.G478* 0.11 TCGA-18-3417-01 15 72020963 72020963 G A THSD4 Missense_Mutation p.G478E 0.12 deleterious(0) probably_damaging(0.985) TCGA-18-3417-01 15 75091700 75091700 C T CSK Silent p.T110T 0.18 TCGA-18-3417-01 15 89400049 89400049 C A ACAN Missense_Mutation p.S1411R 0.31 deleterious(0) probably_damaging(0.988) TCGA-18-3417-01 15 90334210 90334210 C A ANPEP Missense_Mutation p.Q881H 0.33 deleterious(0.02) possibly_damaging(0.726) TCGA-18-3417-01 15 93588839 93588839 T A RGMA Nonsense_Mutation p.K256* 0.06 TCGA-18-3417-01 15 98509152 98509152 A T ARRDC4 Missense_Mutation p.K134N 0.06 deleterious(0) probably_damaging(0.92) TCGA-18-3417-01 15 98984300 98984300 C T FAM169B Silent p.K153K 0.31 TCGA-18-3417-01 16 1652378 1652378 C A IFT140 Missense_Mutation p.G121V 0.18 deleterious(0.01) probably_damaging(0.982) TCGA-18-3417-01 16 19519024 19519024 T C GDE1 Silent p.P207P 0.23 TCGA-18-3417-01 16 19580760 19580760 G C C16orf62 Missense_Mutation p.K133N 0.24 tolerated(0.06) possibly_damaging(0.447) TCGA-18-3417-01 16 2153483 2153483 C A PKD1 Missense_Mutation p.A2859S 0.04 benign(0.031) TCGA-18-3417-01 16 2347370 2347370 C A ABCA3 Silent p.L741L 0.33 TCGA-18-3417-01 16 28948961 28948961 C T CD19 Silent p.N463N 0.16 TCGA-18-3417-01 16 30732749 30732749 G A SRCAP Missense_Mutation p.A1165T 0.16 unknown(0) TCGA-18-3417-01 16 30980721 30980721 C T SETD1A Missense_Mutation p.R956C 0.23 benign(0) TCGA-18-3417-01 16 31131695 31131695 C T KAT8 Missense_Mutation p.R108W 0.23 deleterious(0) probably_damaging(0.917) TCGA-18-3417-01 16 32077433 32077433 G T IGHV3OR16-9 Silent p.G16G 0.09 TCGA-18-3417-01 16 32890574 32890574 G A SLC6A10P RNA 0.21 TCGA-18-3417-01 16 48596134 48596134 G A N4BP1 Silent p.L140L 0.19 TCGA-18-3417-01 16 71423892 71423892 T A CALB2 3'UTR 0.47 TCGA-18-3417-01 16 75263896 75263896 T A BCAR1 Missense_Mutation p.Q755L 0.51 deleterious(0) probably_damaging(0.996) TCGA-18-3417-01 16 8862807 8862807 G T ABAT Nonsense_Mutation p.E265* 0.15 TCGA-18-3417-01 17 27893101 27893101 C A ABHD15 Intron 0.38 TCGA-18-3417-01 17 32956213 32956213 C T TMEM132E Missense_Mutation p.P353L 0.23 deleterious(0) probably_damaging(0.951) TCGA-18-3417-01 17 61621687 61621687 A T KCNH6 Missense_Mutation p.S807C 0.45 deleterious_low_confidence(0.04) possibly_damaging(0.664) TCGA-18-3417-01 17 61958285 61958285 C A GH2 Silent p.L101L 0.44 TCGA-18-3417-01 17 66519945 66519945 A T PRKAR1A Missense_Mutation p.D143V 0.26 deleterious(0.03) benign(0.018) TCGA-18-3417-01 17 7339208 7339208 G T TMEM102 Missense_Mutation p.W6C 0.18 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-18-3417-01 17 7579312 7579312 C A TP53 Silent p.T125T 0.37 TCGA-18-3417-01 17 79009004 79009004 C T BAIAP2 5'UTR 0.50 TCGA-18-3417-01 18 50278670 50278670 G T DCC Missense_Mutation p.G113V 0.20 deleterious(0) probably_damaging(1) TCGA-18-3417-01 18 5419732 5419732 G A EPB41L3 Missense_Mutation p.S495L 0.21 tolerated(0.19) benign(0.001) TCGA-18-3417-01 18 55276599 55276599 T G NARS Missense_Mutation p.K190T 0.12 deleterious(0.03) benign(0.003) TCGA-18-3417-01 18 63547658 63547658 C T CDH7 Missense_Mutation p.T629I 0.07 deleterious(0.02) benign(0.04) TCGA-18-3417-01 19 10476245 10476245 C A TYK2 Missense_Mutation p.G320V 0.30 deleterious(0) probably_damaging(0.987) TCGA-18-3417-01 19 110698 110698 T C OR4F17 Missense_Mutation p.F7S 0.03 deleterious(0) benign(0.372) TCGA-18-3417-01 19 22379545 22379545 A T ZNF676 5'UTR 0.31 TCGA-18-3417-01 19 30936440 30936440 C A ZNF536 Silent p.R657R 0.42 TCGA-18-3417-01 19 31768908 31768908 G A TSHZ3 Silent p.S597S 0.18 TCGA-18-3417-01 19 33878831 33878831 G A PEPD Missense_Mutation p.R437C 0.30 tolerated(0.06) benign(0.004) TCGA-18-3417-01 19 37314233 37314233 T C ZNF790 Silent p.K61K 0.20 TCGA-18-3417-01 19 3907875 3907875 C A ATCAY Missense_Mutation p.L168M 0.41 tolerated(1) benign(0.277) TCGA-18-3417-01 19 39914665 39914665 C T PLEKHG2 Silent p.L964L 0.22 TCGA-18-3417-01 19 41785042 41785042 C T HNRNPUL1 Missense_Mutation p.R283C 0.26 deleterious(0) unknown(0) TCGA-18-3417-01 19 42132258 42132258 C A CEACAM4 Missense_Mutation p.E47D 0.28 deleterious(0) probably_damaging(0.997) TCGA-18-3417-01 19 44127512 44127512 T C CADM4 Silent p.G379G 0.21 TCGA-18-3417-01 19 44280704 44280704 T C KCNN4 Missense_Mutation p.K82E 0.19 tolerated(0.11) possibly_damaging(0.527) TCGA-18-3417-01 19 44934632 44934632 G C ZNF229 Missense_Mutation p.I108M 0.22 deleterious(0.01) benign(0.298) TCGA-18-3417-01 19 46313864 46313864 C A RSPH6A Missense_Mutation p.E295D 0.29 tolerated(0.12) possibly_damaging(0.649) TCGA-18-3417-01 19 49548534 49548534 C A CGB5 Missense_Mutation p.P161T 0.09 deleterious_low_confidence(0.01) probably_damaging(0.981) TCGA-18-3417-01 19 49967959 49967959 A G ALDH16A1 Missense_Mutation p.Y503C 0.28 tolerated(0.11) probably_damaging(0.984) TCGA-18-3417-01 19 50208306 50208306 G T CPT1C Missense_Mutation p.A272S 0.24 deleterious(0.03) benign(0.351) TCGA-18-3417-01 19 50303388 50303388 C G AP2A1 Missense_Mutation p.A479G 0.18 deleterious(0) probably_damaging(0.998) TCGA-18-3417-01 19 52568806 52568806 G A ZNF841 Missense_Mutation p.R777C 0.19 tolerated(0.08) possibly_damaging(0.77) TCGA-18-3417-01 19 52919096 52919096 G - ZNF528 Frame_Shift_Del p.G331Afs*10 0.25 TCGA-18-3417-01 19 53385189 53385189 C T ZNF320 Missense_Mutation p.G64S 0.28 tolerated(0.59) benign(0.14) TCGA-18-3417-01 19 54401253 54401253 C A PRKCG Missense_Mutation p.P327H 0.28 tolerated(0.1) benign(0.289) TCGA-18-3417-01 19 54783386 54783386 C A LILRB2 Nonsense_Mutation p.E158* 0.31 TCGA-18-3417-01 19 6230582 6230582 C A MLLT1 Missense_Mutation p.G140V 0.35 deleterious(0) probably_damaging(0.997) TCGA-18-3417-01 19 7585294 7585294 G T ZNF358 Missense_Mutation p.S389I 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-18-3417-01 19 9083400 9083400 G - MUC16 Frame_Shift_Del p.T2806Lfs*14 0.22 TCGA-18-3417-01 1 104112449 104112449 G T AMY2B Intron 0.21 TCGA-18-3417-01 1 109428153 109428153 A C GPSM2 Missense_Mutation p.E3D 0.04 tolerated_low_confidence(0.08) benign(0.014) TCGA-18-3417-01 1 112999369 112999369 G A CTTNBP2NL Missense_Mutation p.A419T 0.35 deleterious(0.03) probably_damaging(0.998) TCGA-18-3417-01 1 1168120 1168120 G A B3GALT6 Silent p.K154K 0.40 TCGA-18-3417-01 1 11766366 11766366 G T DRAXIN Silent p.L17L 0.38 TCGA-18-3417-01 1 160143418 160143418 C A ATP1A4 Silent p.A634A 0.26 TCGA-18-3417-01 1 161487886 161487886 A T FCGR2A Missense_Mutation p.K301I 0.10 deleterious_low_confidence(0) benign(0.248) TCGA-18-3417-01 1 166039437 166039437 T C FAM78B 3'UTR 0.03 TCGA-18-3417-01 1 175092665 175092665 G T TNN Missense_Mutation p.R927M 0.40 deleterious(0.04) benign(0.099) TCGA-18-3417-01 1 182823280 182823280 A G DHX9 Missense_Mutation p.Y198C 0.42 deleterious(0) probably_damaging(0.999) TCGA-18-3417-01 1 183559534 183559534 C T NCF2 5'UTR 0.38 TCGA-18-3417-01 1 190067595 190067595 C T BRINP3 Nonsense_Mutation p.W618* 0.34 TCGA-18-3417-01 1 197407900 197407900 T A CRB1 Intron 0.45 TCGA-18-3417-01 1 2283069 2283069 C A MORN1 Intron 0.40 TCGA-18-3417-01 1 231403566 231403566 C T GNPAT Missense_Mutation p.S399F 0.52 deleterious(0.01) benign(0.005) TCGA-18-3417-01 1 23419271 23419271 C A LUZP1 Missense_Mutation p.G495V 0.12 tolerated(0.57) benign(0.131) TCGA-18-3417-01 1 236306183 236306183 C T GPR137B Silent p.F87F 0.45 TCGA-18-3417-01 1 23698022 23698022 A G C1orf213 3'UTR 0.22 TCGA-18-3417-01 1 240256727 240256727 A T FMN2 Missense_Mutation p.S440C 0.39 unknown(0) TCGA-18-3417-01 1 36205073 36205073 G A CLSPN Silent p.S1067S 0.06 TCGA-18-3417-01 1 47325337 47325337 G T CYP4Z2P RNA 0.09 TCGA-18-3417-01 1 51771650 51771650 A T TTC39A Missense_Mutation p.L200Q 0.11 deleterious(0) probably_damaging(1) TCGA-18-3417-01 1 52498725 52498725 C A KTI12 Nonsense_Mutation p.E237* 0.31 TCGA-18-3417-01 1 54344035 54344035 C A YIPF1 Missense_Mutation p.G106V 0.25 deleterious(0) probably_damaging(0.984) TCGA-18-3417-01 1 54344036 54344036 C T YIPF1 Missense_Mutation p.G106R 0.24 tolerated(0.1) benign(0.258) TCGA-18-3417-01 1 55473948 55473948 G C BSND Missense_Mutation p.D204H 0.10 deleterious(0.05) possibly_damaging(0.757) TCGA-18-3417-01 1 57420497 57420497 C A C8B Missense_Mutation p.R132M 0.07 deleterious(0) probably_damaging(0.997) TCGA-18-3417-01 1 66102465 66102465 G T LEPR Nonsense_Mutation p.E1089* 0.28 TCGA-18-3417-01 1 74665362 74665362 C G FPGT-TNNI3K Missense_Mutation p.R46G 0.11 tolerated_low_confidence(0.19) benign(0) TCGA-18-3417-01 20 13868588 13868588 C T SEL1L2 Silent p.L221L 0.20 TCGA-18-3417-01 20 17446118 17446118 T A PCSK2 Silent p.G450G 0.17 TCGA-18-3417-01 20 25481510 25481510 T A NINL Missense_Mutation p.Q333L 0.18 deleterious(0) benign(0.253) TCGA-18-3417-01 20 30419933 30419933 C T MYLK2 Silent p.R568R 0.26 TCGA-18-3417-01 20 30785030 30785030 T C PLAGL2 Missense_Mutation p.K239R 0.38 tolerated(0.17) probably_damaging(0.982) TCGA-18-3417-01 20 41101061 41101061 T A PTPRT Missense_Mutation p.Q432L 0.41 tolerated(0.23) benign(0.107) TCGA-18-3417-01 20 60835156 60835156 C T OSBPL2 Nonsense_Mutation p.Q53* 0.12 TCGA-18-3417-01 20 62340111 62340111 G C ZGPAT Missense_Mutation p.S60T 0.14 deleterious(0) probably_damaging(0.987) TCGA-18-3417-01 21 16337882 16337882 C A NRIP1 Missense_Mutation p.V878F 0.22 deleterious(0.04) benign(0.165) TCGA-18-3417-01 21 17242405 17242405 A T USP25 Missense_Mutation p.R872W 0.23 deleterious(0.01) possibly_damaging(0.679) TCGA-18-3417-01 21 31802905 31802905 G T KRTAP13-4 Silent p.S104S 0.24 TCGA-18-3417-01 21 45535237 45535237 A T PWP2 Missense_Mutation p.K188M 0.28 deleterious(0) probably_damaging(0.99) TCGA-18-3417-01 21 47704633 47704633 C A MCM3AP Missense_Mutation p.A190S 0.36 tolerated(0.3) benign(0.041) TCGA-18-3417-01 21 47704634 47704634 C A MCM3AP Silent p.L189L 0.36 TCGA-18-3417-01 21 47970476 47970476 G T DIP2A Missense_Mutation p.Q886H 0.21 tolerated(0.09) probably_damaging(0.969) TCGA-18-3417-01 22 26692894 26692894 T C SEZ6L Missense_Mutation p.I337T 0.41 deleterious(0) probably_damaging(0.997) TCGA-18-3417-01 22 39824179 39824179 C T TAB1 Missense_Mutation p.T433I 0.16 tolerated(0.07) possibly_damaging(0.776) TCGA-18-3417-01 22 46782308 46782308 C T CELSR1 Missense_Mutation p.A2244T 0.19 tolerated(0.07) benign(0.036) TCGA-18-3417-01 2 141643896 141643896 C T LRP1B Missense_Mutation p.E1259K 0.25 benign(0.292) TCGA-18-3417-01 2 149850999 149850999 T A KIF5C Missense_Mutation p.L657Q 0.50 deleterious(0) probably_damaging(0.986) TCGA-18-3417-01 2 152520196 152520196 T A NEB Missense_Mutation p.S1877C 0.06 probably_damaging(0.999) TCGA-18-3417-01 2 183948271 183948271 A - DUSP19 Frame_Shift_Del p.K89Rfs*4 0.15 TCGA-18-3417-01 2 197964515 197964515 C A ANKRD44 3'UTR 0.45 TCGA-18-3417-01 2 204131338 204131338 G A CYP20A1 Silent p.Q178Q 0.44 TCGA-18-3417-01 2 206050578 206050578 A T PARD3B Missense_Mutation p.Y610F 0.44 tolerated(0.21) benign(0.004) TCGA-18-3417-01 2 206166465 206166465 G A PARD3B Intron 0.44 TCGA-18-3417-01 2 216269278 216269278 C T FN1 Silent p.L1029L 0.19 TCGA-18-3417-01 2 219254677 219254677 G A SLC11A1 Missense_Mutation p.V294I 0.36 tolerated(0.32) benign(0.322) TCGA-18-3417-01 2 26624930 26624930 C T DRC1 Missense_Mutation p.P25S 0.30 deleterious(0) probably_damaging(1) TCGA-18-3417-01 2 32361636 32361636 G C SPAST Missense_Mutation p.G417A 0.33 tolerated(0.06) probably_damaging(0.998) TCGA-18-3417-01 2 40387975 40387975 T C SLC8A1 Silent p.T733T 0.39 TCGA-18-3417-01 2 40656127 40656127 T A SLC8A1 Nonsense_Mutation p.R432* 0.36 TCGA-18-3417-01 2 43926841 43926841 C T PLEKHH2 Silent p.G248G 0.15 TCGA-18-3417-01 2 48059965 48059965 T A FBXO11 Missense_Mutation p.I366F 0.13 deleterious(0.04) benign(0.441) TCGA-18-3417-01 2 48906662 48906662 A G STON1-GTF2A1L 3'UTR 0.48 TCGA-18-3417-01 2 58425768 58425768 C A FANCL Silent p.V167V 0.34 TCGA-18-3417-01 2 73477477 73477477 T C CCT7 Missense_Mutation p.F372L 0.39 tolerated(0.58) benign(0.002) TCGA-18-3417-01 2 73899487 73899487 A G ALMS1P RNA 0.24 TCGA-18-3417-01 2 79363990 79363990 A G REG1P RNA 0.17 TCGA-18-3417-01 2 89278251 89278251 T A IGKV3-7 Silent p.P28P 0.34 TCGA-18-3417-01 2 89399795 89399795 C G IGKV1-16 Silent p.G11G 0.10 TCGA-18-3417-01 3 101481404 101481404 G T CEP97 Missense_Mutation p.Q631H 0.29 deleterious(0.02) benign(0.291) TCGA-18-3417-01 3 114058223 114058223 C G ZBTB20 Missense_Mutation p.D619H 0.19 deleterious(0.01) probably_damaging(0.99) TCGA-18-3417-01 3 121208879 121208879 T C POLQ Missense_Mutation p.S967G 0.20 tolerated(0.08) benign(0.118) TCGA-18-3417-01 3 128987831 128987831 G T COPG1 Nonsense_Mutation p.E611* 0.26 TCGA-18-3417-01 3 129284817 129284817 A G PLXND1 Missense_Mutation p.L1412S 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-18-3417-01 3 132440894 132440894 G A NPHP3 Silent p.R102R 0.13 TCGA-18-3417-01 3 143691417 143691417 C A C3orf58 Silent p.R81R 0.26 TCGA-18-3417-01 3 174815049 174815049 A C NAALADL2 Silent p.T171T 0.02 TCGA-18-3417-01 3 179529588 179529588 C T PEX5L Splice_Site p.X385_splice 0.44 TCGA-18-3417-01 3 182775130 182775130 C A MCCC1 Missense_Mutation p.R281L 0.49 deleterious(0) probably_damaging(1) TCGA-18-3417-01 3 182775210 182775210 C A MCCC1 Missense_Mutation p.R254S 0.19 deleterious(0) probably_damaging(0.982) TCGA-18-3417-01 3 182775211 182775211 C A MCCC1 Splice_Site p.X254_splice 0.20 TCGA-18-3417-01 3 185393116 185393116 C T IGF2BP2 Missense_Mutation p.E347K 0.13 deleterious(0) probably_damaging(0.995) TCGA-18-3417-01 3 188242542 188242542 G C LPP Missense_Mutation p.E132D 0.04 tolerated(0.47) probably_damaging(0.997) TCGA-18-3417-01 3 19498446 19498468 ACAACCTCCGAGAAGGTCATGAG - KCNH8 Frame_Shift_Del p.Y671* 0.29 TCGA-18-3417-01 3 196387954 196387954 C A NRROS Nonsense_Mutation p.C480* 0.35 TCGA-18-3417-01 3 3143397 3143397 C A IL5RA Missense_Mutation p.A116S 0.17 deleterious(0.02) possibly_damaging(0.688) TCGA-18-3417-01 3 36485038 36485038 G T STAC Missense_Mutation p.R98S 0.45 tolerated(0.13) benign(0.33) TCGA-18-3417-01 3 36763059 36763059 C G DCLK3 Missense_Mutation p.G515A 0.22 deleterious(0) probably_damaging(1) TCGA-18-3417-01 3 50197101 50197101 G T SEMA3F Missense_Mutation p.A16S 0.33 tolerated(0.28) unknown(0) TCGA-18-3417-01 3 52621527 52621527 C T PBRM1 Intron 0.52 TCGA-18-3417-01 3 52685796 52685796 C G PBRM1 Missense_Mutation p.E226Q 0.50 tolerated(0.16) possibly_damaging(0.448) TCGA-18-3417-01 3 52822040 52822040 T A ITIH1 Missense_Mutation p.S655T 0.19 tolerated(0.45) benign(0.001) TCGA-18-3417-01 3 68466452 68466452 A G FAM19A1 Missense_Mutation p.I47M 0.27 deleterious(0) probably_damaging(0.996) TCGA-18-3417-01 3 71804003 71804003 G T GPR27 Missense_Mutation p.R268L 0.36 deleterious(0.01) probably_damaging(0.964) TCGA-18-3417-01 3 7721755 7721755 C T GRM7 Missense_Mutation p.T824M 0.32 deleterious(0.02) probably_damaging(0.95) TCGA-18-3417-01 3 97194270 97194270 G A EPHA6 Missense_Mutation p.V657I 0.12 tolerated(0.25) benign(0.036) TCGA-18-3417-01 3 9803340 9803340 G C CAMK1 Silent p.T177T 0.28 TCGA-18-3417-01 4 113539940 113539940 T A C4orf21 Missense_Mutation p.S420C 0.12 tolerated(0.06) possibly_damaging(0.601) TCGA-18-3417-01 4 123665001 123665001 A T BBS12 Missense_Mutation p.I652F 0.28 tolerated(0.4) benign(0.087) TCGA-18-3417-01 4 149075852 149075852 C A NR3C2 Missense_Mutation p.V739F 0.33 tolerated(0.16) benign(0.001) TCGA-18-3417-01 4 177084335 177084335 G A WDR17 Missense_Mutation p.E985K 0.25 tolerated(0.08) probably_damaging(0.993) TCGA-18-3417-01 4 187535499 187535499 C G FAT1 Splice_Site p.X3026_splice 0.31 TCGA-18-3417-01 4 55972058 55972058 T A KDR Missense_Mutation p.K529I 0.13 deleterious(0) probably_damaging(0.936) TCGA-18-3417-01 4 56841063 56841063 A G CEP135 Missense_Mutation p.I467M 0.29 tolerated(0.92) benign(0.017) TCGA-18-3417-01 4 57215750 57215750 T C AASDH Missense_Mutation p.N723D 0.11 tolerated(0.34) benign(0.002) TCGA-18-3417-01 4 62775413 62775413 C T LPHN3 Missense_Mutation p.R607W 0.17 deleterious(0) probably_damaging(0.953) TCGA-18-3417-01 4 71467291 71467291 G C AMBN Missense_Mutation p.G151R 0.28 tolerated(0.25) benign(0.021) TCGA-18-3417-01 4 72420899 72420899 G A SLC4A4 Missense_Mutation p.G913R 0.24 deleterious(0) probably_damaging(0.944) TCGA-18-3417-01 4 76808007 76808007 T C PPEF2 Missense_Mutation p.K193E 0.06 deleterious(0) possibly_damaging(0.794) TCGA-18-3417-01 4 90830444 90830444 T A MMRN1 Missense_Mutation p.V214E 0.27 deleterious(0) probably_damaging(1) TCGA-18-3417-01 4 94344033 94344033 G C GRID2 Missense_Mutation p.E487Q 0.24 deleterious(0.04) probably_damaging(0.921) TCGA-18-3417-01 5 115298562 115298562 C A AQPEP Missense_Mutation p.T83N 0.26 tolerated(0.31) benign(0.11) TCGA-18-3417-01 5 121187708 121187708 C T FTMT Missense_Mutation p.A17V 0.23 tolerated_low_confidence(0.73) benign(0.001) TCGA-18-3417-01 5 130535340 130535340 C A LYRM7 3'UTR 0.08 TCGA-18-3417-01 5 13917329 13917329 T C DNAH5 Missense_Mutation p.T338A 0.08 benign(0) TCGA-18-3417-01 5 140223348 140223348 G A PCDHA8 Intron 0.28 TCGA-18-3417-01 5 140235897 140235897 G T PCDHA10 Silent p.R88R 0.29 TCGA-18-3417-01 5 140767900 140767900 C T PCDHGB4 Missense_Mutation p.T150I 0.23 deleterious(0.02) benign(0.259) TCGA-18-3417-01 5 149514533 149514533 G C PDGFRB Missense_Mutation p.I137M 0.26 tolerated(0.07) benign(0.047) TCGA-18-3417-01 5 153029961 153029961 T A GRIA1 Missense_Mutation p.L188M 0.27 tolerated(0.14) benign(0.01) TCGA-18-3417-01 5 176314610 176314610 C T HK3 Missense_Mutation p.R481H 0.31 tolerated(0.15) benign(0.004) TCGA-18-3417-01 5 176517820 176517820 C G FGFR4 Missense_Mutation p.Q144E 0.21 tolerated(1) benign(0.028) TCGA-18-3417-01 5 24593422 24593422 G A CDH10 Nonsense_Mutation p.Q60* 0.24 TCGA-18-3417-01 5 34823967 34823967 G A RAI14 Missense_Mutation p.E677K 0.11 tolerated(0.22) benign(0.197) TCGA-18-3417-01 5 35065589 35065589 G A PRLR Missense_Mutation p.P491S 0.27 tolerated(0.76) benign(0.009) TCGA-18-3417-01 5 43487036 43487036 A C C5orf34 Missense_Mutation p.L633R 0.32 deleterious(0) probably_damaging(0.995) TCGA-18-3417-01 5 90667245 90667245 T C ARRDC3 Missense_Mutation p.D406G 0.25 tolerated(0.1) benign(0.005) TCGA-18-3417-01 5 9629847 9629847 C T TAS2R1 Missense_Mutation p.G100S 0.04 tolerated(0.41) benign(0.418) TCGA-18-3417-01 6 123539864 123539864 C A TRDN Missense_Mutation p.C691F 0.19 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-18-3417-01 6 133013397 133013397 C G VNN1 Missense_Mutation p.G385R 0.15 deleterious(0.02) probably_damaging(0.99) TCGA-18-3417-01 6 146126164 146126164 T C FBXO30 Missense_Mutation p.T460A 0.17 deleterious(0) probably_damaging(0.995) TCGA-18-3417-01 6 152265432 152265432 G T ESR1 Silent p.P295P 0.17 TCGA-18-3417-01 6 152668193 152668193 C A SYNE1 Splice_Site p.X4026_splice 0.19 TCGA-18-3417-01 6 152746553 152746553 C T SYNE1 Missense_Mutation p.E1744K 0.22 benign(0.002) TCGA-18-3417-01 6 152762360 152762360 C A SYNE1 Missense_Mutation p.V1352L 0.18 benign(0.088) TCGA-18-3417-01 6 25967059 25967059 C T TRIM38 Silent p.F103F 0.26 TCGA-18-3417-01 6 28327584 28327584 G T ZKSCAN3 Missense_Mutation p.W74L 0.15 deleterious(0) probably_damaging(0.997) TCGA-18-3417-01 6 33245564 33245565 CC - B3GALT4 Frame_Shift_Del p.Q124Gfs*3 0.11 TCGA-18-3417-01 6 35201038 35201038 T A SCUBE3 Missense_Mutation p.H224Q 0.27 deleterious(0.02) probably_damaging(0.976) TCGA-18-3417-01 6 38899660 38899660 C T DNAH8 Missense_Mutation p.P3566L 0.05 probably_damaging(1) TCGA-18-3417-01 6 44253968 44253968 G A TCTE1 Silent p.V193V 0.08 TCGA-18-3417-01 6 51618128 51618128 C T PKHD1 Missense_Mutation p.G2941S 0.19 deleterious(0.05) benign(0.333) TCGA-18-3417-01 6 70812096 70812096 A G COL19A1 Silent p.P420P 0.17 TCGA-18-3417-01 6 89793726 89793726 G T PNRC1 Missense_Mutation p.K265N 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-18-3417-01 7 100032996 100032996 C T PPP1R35 Missense_Mutation p.R250Q 0.04 tolerated(0.35) benign(0.308) TCGA-18-3417-01 7 11464333 11464333 G A THSD7A Nonsense_Mutation p.R1125* 0.35 TCGA-18-3417-01 7 128097259 128097259 C T HILPDA 5'UTR 0.56 TCGA-18-3417-01 7 129813706 129813706 G T TMEM209 Missense_Mutation p.T473N 0.47 deleterious(0.01) probably_damaging(0.989) TCGA-18-3417-01 7 141478538 141478538 T C TAS2R4 Missense_Mutation p.F84L 0.33 tolerated(0.2) benign(0.022) TCGA-18-3417-01 7 148910796 148910796 C G ZNF282 Missense_Mutation p.S357C 0.39 deleterious(0.05) possibly_damaging(0.894) TCGA-18-3417-01 7 149486368 149486368 G A SSPO RNA 0.26 TCGA-18-3417-01 7 150324861 150324861 G T GIMAP6 Silent p.I275I 0.52 TCGA-18-3417-01 7 150389460 150389460 G A GIMAP2 Missense_Mutation p.G29D 0.15 deleterious(0) probably_damaging(1) TCGA-18-3417-01 7 152009027 152009027 G A KMT2C Nonsense_Mutation p.R199* 0.22 TCGA-18-3417-01 7 27148028 27148028 T A HOXA3 Missense_Mutation p.M280L 0.59 tolerated(0.87) benign(0.016) TCGA-18-3417-01 7 55223520 55223520 C T EGFR Intron 0.53 TCGA-18-3417-01 7 57187553 57187553 A G ZNF479 Silent p.C523C 0.13 TCGA-18-3417-01 7 72744316 72744316 G A FKBP6 Silent p.L143L 0.15 TCGA-18-3417-01 7 82764123 82764123 C A PCLO Missense_Mutation p.A915S 0.53 unknown(0) TCGA-18-3417-01 7 86416093 86416093 C A GRM3 Missense_Mutation p.P329T 0.52 tolerated(0.42) benign(0.019) TCGA-18-3417-01 7 88965674 88965674 C A ZNF804B Missense_Mutation p.D1126E 0.48 deleterious(0.04) probably_damaging(0.999) TCGA-18-3417-01 7 926205 926205 G A GET4 Splice_Site p.X79_splice 0.10 TCGA-18-3417-01 7 926206 926206 C T GET4 Nonsense_Mutation p.Q79* 0.10 TCGA-18-3417-01 7 99490142 99490142 C G TRIM4 Missense_Mutation p.E383Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-18-3417-01 8 100836079 100836079 C T VPS13B Missense_Mutation p.S3093F 0.03 deleterious(0) benign(0) TCGA-18-3417-01 8 103251071 103251071 C G RRM2B Missense_Mutation p.G11A 0.43 tolerated_low_confidence(0.54) benign(0.001) TCGA-18-3417-01 8 105105769 105105769 G T RIMS2 Intron 0.09 TCGA-18-3417-01 8 109241403 109241403 C T EIF3E Missense_Mutation p.A165T 0.45 tolerated(0.35) benign(0.231) TCGA-18-3417-01 8 113662392 113662392 T A CSMD3 Missense_Mutation p.D1064V 0.44 deleterious(0.01) possibly_damaging(0.881) TCGA-18-3417-01 8 11832058 11832058 A G DEFB136 Silent p.P17P 0.16 TCGA-18-3417-01 8 124440252 124440252 G C WDYHV1 Missense_Mutation p.E58Q 0.13 tolerated(0.11) possibly_damaging(0.7) TCGA-18-3417-01 8 126011677 126011677 C A SQLE Missense_Mutation p.T11N 0.40 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-18-3417-01 8 12957578 12957578 G T DLC1 Silent p.P756P 0.08 TCGA-18-3417-01 8 131792917 131792917 T C ADCY8 Missense_Mutation p.S1159G 0.07 deleterious(0.01) benign(0.007) TCGA-18-3417-01 8 131949360 131949360 G T ADCY8 Missense_Mutation p.H480Q 0.40 tolerated(0.21) benign(0.254) TCGA-18-3417-01 8 2820851 2820851 C A CSMD1 Missense_Mutation p.G3116V 0.27 probably_damaging(1) TCGA-18-3417-01 8 29927357 29927357 C A TMEM66 Silent p.S167S 0.10 TCGA-18-3417-01 8 3263612 3263612 A T CSMD1 Missense_Mutation p.S735T 0.09 benign(0.011) TCGA-18-3417-01 8 37623233 37623233 A C PROSC Missense_Mutation p.Q71P 0.20 deleterious(0.02) possibly_damaging(0.512) TCGA-18-3417-01 8 63973758 63973758 T A TTPA 3'UTR 0.29 TCGA-18-3417-01 8 89179936 89179936 G T MMP16 Nonsense_Mutation p.S224* 0.41 TCGA-18-3417-01 9 109687239 109687239 A C ZNF462 Missense_Mutation p.K349T 0.28 benign(0.403) TCGA-18-3417-01 9 111617377 111617377 G A ACTL7B Silent p.R278R 0.28 TCGA-18-3417-01 9 115925107 115925107 A G SLC31A2 Silent p.V114V 0.29 TCGA-18-3417-01 9 123367532 123367532 C T MEGF9 Missense_Mutation p.G582D 0.30 deleterious(0) possibly_damaging(0.868) TCGA-18-3417-01 9 123367533 123367533 C G MEGF9 Missense_Mutation p.G582R 0.29 deleterious(0) possibly_damaging(0.864) TCGA-18-3417-01 9 14720297 14720297 C T CER1 Missense_Mutation p.A199T 0.25 tolerated(0.5) benign(0.027) TCGA-18-3417-01 9 21227562 21227562 T C IFNA17 3'UTR 0.30 TCGA-18-3417-01 X 105449469 105449469 G T MUM1L1 Missense_Mutation p.W15L 0.30 deleterious(0) probably_damaging(0.999) TCGA-18-3417-01 X 109246910 109246910 G T TMEM164 5'UTR 0.34 TCGA-18-3417-01 X 111095583 111095583 A G TRPC5 Silent p.F440F 0.36 TCGA-18-3417-01 X 11316885 11316885 C T AMELX Missense_Mutation p.P135L 0.30 tolerated(0.89) unknown(0) TCGA-18-3417-01 X 120009297 120009297 G T CT47B1 Silent p.P76P 0.50 TCGA-18-3417-01 X 130419264 130419264 T - IGSF1 Frame_Shift_Del p.I186Lfs*4 0.32 TCGA-18-3417-01 X 22208614 22208614 A T PHEX Missense_Mutation p.Q547L 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-18-3417-01 X 35820595 35820595 T C MAGEB16 Silent p.D94D 0.31 TCGA-18-3417-01 X 36156569 36156569 C G CHDC2 Missense_Mutation p.D416E 0.24 tolerated(0.09) benign(0.34) TCGA-18-3417-01 X 37028587 37028587 C T FAM47C Missense_Mutation p.L702F 0.35 deleterious(0.03) probably_damaging(0.983) TCGA-18-3417-01 X 39932785 39932785 G T BCOR Missense_Mutation p.P605H 0.30 deleterious(0) probably_damaging(0.999) TCGA-18-3417-01 Y 21901521 21901521 C A KDM5D Nonsense_Mutation p.E184* 0.43 TCGA-18-3417-01 Y 2712180 2712180 C T RPS4Y1 Silent p.L48L 0.30 TCGA-18-3421-01 10 100904106 100904106 C A HPSE2 Missense_Mutation p.A167S 0.60 tolerated(0.24) probably_damaging(0.993) TCGA-18-3421-01 10 1043236 1043236 C A GTPBP4 Missense_Mutation p.S183R 0.24 deleterious(0) benign(0.421) TCGA-18-3421-01 10 104679115 104679115 G T CNNM2 Missense_Mutation p.C293F 0.64 deleterious(0) possibly_damaging(0.885) TCGA-18-3421-01 10 105903234 105903234 A C WDR96 Missense_Mutation p.W1370G 0.23 deleterious(0) probably_damaging(0.997) TCGA-18-3421-01 10 106152087 106152087 C G CCDC147 Missense_Mutation p.Q488E 0.10 tolerated(0.16) possibly_damaging(0.498) TCGA-18-3421-01 10 116075338 116075338 A G AFAP1L2 Missense_Mutation p.I198T 0.13 deleterious(0) possibly_damaging(0.861) TCGA-18-3421-01 10 133976837 133976837 G T JAKMIP3 Missense_Mutation p.R780L 0.21 deleterious(0) possibly_damaging(0.71) TCGA-18-3421-01 10 29812458 29812458 A C SVIL Missense_Mutation p.L1029V 0.45 tolerated_low_confidence(0.53) benign(0.002) TCGA-18-3421-01 10 72061170 72061170 C T LRRC20 Silent p.P165P 0.53 TCGA-18-3421-01 10 89717678 89717678 G T PTEN Nonsense_Mutation p.E235* 0.61 TCGA-18-3421-01 10 91099511 91099511 C A IFIT3 Missense_Mutation p.L367I 0.68 deleterious(0.04) benign(0.051) TCGA-18-3421-01 11 105009762 105009762 C A CARD18 Silent p.V17V 0.41 TCGA-18-3421-01 11 10651189 10651189 T C MRVI1 Missense_Mutation p.K157R 0.22 tolerated(0.34) benign(0.101) TCGA-18-3421-01 11 124413497 124413497 G C OR8B12 Missense_Mutation p.H18Q 0.09 tolerated_low_confidence(0.13) benign(0.017) TCGA-18-3421-01 11 126279302 126279302 A C ST3GAL4 Missense_Mutation p.K256T 0.44 deleterious(0.05) benign(0.038) TCGA-18-3421-01 11 17415307 17415307 C A ABCC8 Splice_Site p.X1516_splice 0.33 TCGA-18-3421-01 11 17415308 17415308 T A ABCC8 Splice_Site p.X1516_splice 0.31 TCGA-18-3421-01 11 18536390 18536390 T G TSG101 Splice_Site p.X65_splice 0.29 TCGA-18-3421-01 11 33564293 33564293 G T KIAA1549L Missense_Mutation p.G98V 0.42 tolerated_low_confidence(0.27) benign(0.001) TCGA-18-3421-01 11 35227670 35227670 C T CD44 Missense_Mutation p.H432Y 0.22 deleterious(0.05) benign(0.002) TCGA-18-3421-01 11 43284618 43284618 G C HNRNPKP3 RNA 0.15 TCGA-18-3421-01 11 48238439 48238439 T A OR4B1 Missense_Mutation p.F26L 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-18-3421-01 11 49974618 49974618 C T OR4C13 Missense_Mutation p.S215F 0.40 deleterious_low_confidence(0) possibly_damaging(0.833) TCGA-18-3421-01 11 55433437 55433437 A T OR4C6 Silent p.I265I 0.10 TCGA-18-3421-01 11 55595379 55595379 C T OR5L2 Missense_Mutation p.H229Y 0.39 deleterious(0.02) benign(0.321) TCGA-18-3421-01 11 55861574 55861574 C T OR8I2 Missense_Mutation p.T264I 0.20 deleterious(0) possibly_damaging(0.812) TCGA-18-3421-01 11 56510796 56510796 G A OR9G4 Silent p.Y164Y 0.41 TCGA-18-3421-01 11 59271511 59271511 C T OR4D11 Missense_Mutation p.H155Y 0.33 deleterious(0.01) probably_damaging(1) TCGA-18-3421-01 11 60102454 60102454 C A MS4A6E Missense_Mutation p.P29H 0.09 tolerated(0.11) possibly_damaging(0.67) TCGA-18-3421-01 11 60665636 60665636 G C PRPF19 Silent p.V416V 0.21 TCGA-18-3421-01 11 62361826 62361826 C G MTA2 Silent p.G582G 0.08 TCGA-18-3421-01 11 65123451 65123451 G T TIGD3 Missense_Mutation p.D58Y 0.14 deleterious(0) probably_damaging(0.972) TCGA-18-3421-01 11 65266496 65266496 C T MALAT1 RNA 0.27 TCGA-18-3421-01 11 68190986 68190986 C G LRP5 Silent p.G1019G 0.19 TCGA-18-3421-01 11 7324382 7324382 C T SYT9 Silent p.G86G 0.21 TCGA-18-3421-01 11 73834143 73834143 C A C2CD3 Missense_Mutation p.G419C 0.48 deleterious(0) probably_damaging(1) TCGA-18-3421-01 11 7818198 7818198 C A OR5P2 Missense_Mutation p.G98C 0.17 tolerated(0.5) benign(0.013) TCGA-18-3421-01 11 78413354 78413354 T C TENM4 Missense_Mutation p.N1435S 0.40 tolerated(0.17) benign(0.157) TCGA-18-3421-01 11 8737260 8737260 G A ST5 Silent p.L579L 0.38 TCGA-18-3421-01 11 92085865 92085865 A T FAT3 Missense_Mutation p.Y196F 0.29 benign(0.035) TCGA-18-3421-01 12 10954482 10954482 G - TAS2R7 Frame_Shift_Del p.H230Mfs*2 0.19 TCGA-18-3421-01 12 11149889 11149889 G A TAS2R20 Silent p.L196L 0.30 TCGA-18-3421-01 12 113346549 113346549 G T OAS1 Missense_Mutation p.R130L 0.41 deleterious(0.03) possibly_damaging(0.668) TCGA-18-3421-01 12 113830678 113830678 G T SDS 3'UTR 0.31 TCGA-18-3421-01 12 121471503 121471503 T G OASL Missense_Mutation p.E81A 0.18 deleterious(0.01) possibly_damaging(0.521) TCGA-18-3421-01 12 132262629 132262629 G T SFSWAP Missense_Mutation p.C721F 0.14 deleterious(0.01) possibly_damaging(0.506) TCGA-18-3421-01 12 133209281 133209281 C A POLE Missense_Mutation p.Q2035H 0.21 tolerated(0.09) benign(0.396) TCGA-18-3421-01 12 20858882 20858882 G A SLCO1C1 Splice_Site p.X91_splice 0.33 TCGA-18-3421-01 12 32135211 32135211 C T KIAA1551 Missense_Mutation p.S441F 0.17 deleterious(0) probably_damaging(0.969) TCGA-18-3421-01 12 3921356 3921356 T A PARP11 Missense_Mutation p.N317I 0.10 deleterious(0.01) benign(0.33) TCGA-18-3421-01 12 4737745 4737745 C A AKAP3 Missense_Mutation p.C108F 0.35 tolerated(0.71) benign(0) TCGA-18-3421-01 12 49691303 49691303 T C PRPH Missense_Mutation p.M387T 0.53 deleterious(0.01) probably_damaging(0.968) TCGA-18-3421-01 12 56994557 56994584 GGGACCAGCTCATAATCCCTTCTTGAAA - BAZ2A Frame_Shift_Del p.F1497Pfs*10 0.28 TCGA-18-3421-01 12 57348829 57348829 T A RDH16 Missense_Mutation p.T145S 0.16 deleterious(0.02) probably_damaging(0.986) TCGA-18-3421-01 12 66308996 66308996 G C HMGA2 Intron 0.41 TCGA-18-3421-01 12 6675952 6675952 G A NOP2 Missense_Mutation p.A47V 0.29 deleterious(0) possibly_damaging(0.834) TCGA-18-3421-01 12 72029243 72029243 C T ZFC3H1 Missense_Mutation p.E740K 0.19 deleterious(0) probably_damaging(0.987) TCGA-18-3421-01 12 72092834 72092834 T C TMEM19 Silent p.A264A 0.25 TCGA-18-3421-01 13 111111228 111111228 G A COL4A2 Missense_Mutation p.G515R 0.26 probably_damaging(1) TCGA-18-3421-01 13 21172829 21172829 A G IFT88 Missense_Mutation p.M221V 0.34 deleterious(0) benign(0.214) TCGA-18-3421-01 13 23909099 23909099 T A SACS Silent p.P2972P 0.29 TCGA-18-3421-01 13 24895767 24895767 C G C1QTNF9 Missense_Mutation p.S288C 0.19 deleterious(0) probably_damaging(1) TCGA-18-3421-01 13 30096527 30096527 A C SLC7A1 Missense_Mutation p.F372L 0.19 deleterious(0.01) possibly_damaging(0.626) TCGA-18-3421-01 14 100157448 100157448 G A CYP46A1 Nonsense_Mutation p.W50* 0.16 TCGA-18-3421-01 14 105414569 105414569 G A AHNAK2 Missense_Mutation p.P2407S 0.05 benign(0.002) TCGA-18-3421-01 14 107083513 107083513 C G IGHV4-59 Missense_Mutation p.V31L 0.29 tolerated_low_confidence(0.07) benign(0.117) TCGA-18-3421-01 14 20296014 20296014 T A OR4N2 Missense_Mutation p.M136K 0.17 deleterious(0.01) benign(0.02) TCGA-18-3421-01 14 31203995 31203995 G T SCFD1 Splice_Site p.X613_splice 0.20 TCGA-18-3421-01 14 33291678 33291678 G C AKAP6 Missense_Mutation p.M1553I 0.25 tolerated_low_confidence(1) benign(0.001) TCGA-18-3421-01 14 35240766 35240766 G C BAZ1A Silent p.L1084L 0.39 TCGA-18-3421-01 14 64989724 64989724 G C ZBTB1 Missense_Mutation p.R501T 0.42 tolerated(0.59) benign(0.343) TCGA-18-3421-01 14 67664902 67664902 T C FAM71D Silent p.T8T 0.51 TCGA-18-3421-01 14 67859957 67859957 G A PLEK2 Missense_Mutation p.R131C 0.14 tolerated(0.05) benign(0) TCGA-18-3421-01 14 68151842 68151842 C T RDH11 Nonsense_Mutation p.W248* 0.47 TCGA-18-3421-01 14 71197081 71197081 C A MAP3K9 3'UTR 0.38 TCGA-18-3421-01 14 77948672 77948672 G C ISM2 Silent p.V322V 0.51 TCGA-18-3421-01 14 79181203 79181203 C A NRXN3 Missense_Mutation p.R216S 0.17 tolerated(0.24) probably_damaging(0.976) TCGA-18-3421-01 14 86089506 86089506 G T FLRT2 Missense_Mutation p.A550S 0.37 deleterious(0.01) probably_damaging(0.939) TCGA-18-3421-01 14 94395040 94395040 G A FAM181A Missense_Mutation p.A199T 0.20 deleterious(0) probably_damaging(0.999) TCGA-18-3421-01 15 102358526 102358526 T A OR4F15 Missense_Mutation p.V46E 0.18 deleterious_low_confidence(0.02) probably_damaging(0.958) TCGA-18-3421-01 15 20649655 20649655 G T HERC2P3 RNA 0.09 TCGA-18-3421-01 15 23889861 23889861 G T MAGEL2 Missense_Mutation p.S407Y 0.22 deleterious(0) benign(0.272) TCGA-18-3421-01 15 26806138 26806138 T C GABRB3 Missense_Mutation p.K341E 0.28 deleterious(0.03) possibly_damaging(0.868) TCGA-18-3421-01 15 44695177 44695177 T A CASC4 Missense_Mutation p.Y389N 0.29 deleterious(0) probably_damaging(1) TCGA-18-3421-01 15 51696617 51696617 G T GLDN Missense_Mutation p.S441I 0.18 deleterious(0.03) possibly_damaging(0.823) TCGA-18-3421-01 15 53081656 53081656 C A ONECUT1 Silent p.A142A 0.21 TCGA-18-3421-01 15 59910702 59910702 C A GCNT3 Missense_Mutation p.L89M 0.29 deleterious(0.01) probably_damaging(0.947) TCGA-18-3421-01 15 64669065 64669065 C G KIAA0101 Missense_Mutation p.R56P 0.21 deleterious(0) probably_damaging(0.985) TCGA-18-3421-01 15 75014644 75014644 C T CYP1A1 Missense_Mutation p.M265I 0.31 tolerated(0.85) benign(0.002) TCGA-18-3421-01 15 80806299 80806299 C G ARNT2 Missense_Mutation p.T258S 0.54 tolerated(0.36) benign(0.292) TCGA-18-3421-01 15 90904301 90904301 A G ZNF774 Missense_Mutation p.N413S 0.18 tolerated(1) benign(0.033) TCGA-18-3421-01 15 91527314 91527314 T G PRC1 Missense_Mutation p.K67N 0.08 deleterious(0.01) possibly_damaging(0.516) TCGA-18-3421-01 16 11979113 11979113 T C GSPT1 Silent p.P424P 0.37 TCGA-18-3421-01 16 29909221 29909221 A G SEZ6L2 Missense_Mutation p.L55P 0.19 deleterious(0.02) possibly_damaging(0.671) TCGA-18-3421-01 16 49671628 49671651 CAGAGATGTTGCCAAACTGCATCA - ZNF423 In_Frame_Del p.V471_S478del 0.21 TCGA-18-3421-01 16 57555030 57555030 T G CCDC102A Missense_Mutation p.K291Q 0.22 deleterious(0) probably_damaging(0.933) TCGA-18-3421-01 16 67702526 67702526 C G C16orf86 3'UTR 0.14 TCGA-18-3421-01 16 68894080 68894080 C T TANGO6 Missense_Mutation p.P130S 0.34 deleterious(0) probably_damaging(1) TCGA-18-3421-01 16 70405977 70405977 C A DDX19A 3'UTR 0.29 TCGA-18-3421-01 17 19284863 19284863 C T MAPK7 Silent p.D447D 0.28 TCGA-18-3421-01 17 29221045 29221045 C T ATAD5 Missense_Mutation p.S1725L 0.19 deleterious(0.01) possibly_damaging(0.839) TCGA-18-3421-01 17 41256906 41256906 G A BRCA1 Nonsense_Mutation p.Q94* 0.71 TCGA-18-3421-01 17 42089419 42089419 G C TMEM101 Silent p.L217L 0.16 TCGA-18-3421-01 17 46135878 46135878 C T NFE2L1 Silent p.P398P 0.12 TCGA-18-3421-01 17 47122365 47122365 G T IGF2BP1 Nonsense_Mutation p.E445* 0.52 TCGA-18-3421-01 17 5033921 5033921 G T USP6 Missense_Mutation p.D33Y 0.09 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-18-3421-01 17 56677004 56677004 C - TEX14 Frame_Shift_Del p.V574Ffs*10 0.36 TCGA-18-3421-01 17 58538059 58538059 G A APPBP2 Silent p.V342V 0.53 TCGA-18-3421-01 17 66972116 66972116 A T ABCA9 Missense_Mutation p.D1605E 0.66 tolerated(0.13) benign(0.053) TCGA-18-3421-01 17 73870746 73870746 G A TRIM47 Missense_Mutation p.R579W 0.17 deleterious(0) probably_damaging(0.989) TCGA-18-3421-01 17 7578415 7578415 A C TP53 Missense_Mutation p.V172G 0.44 deleterious(0) probably_damaging(0.996) TCGA-18-3421-01 17 80790024 80790024 G A ZNF750 Nonsense_Mutation p.Q103* 0.48 TCGA-18-3421-01 18 32886865 32886865 G C ZNF271 RNA 0.66 TCGA-18-3421-01 18 47404253 47404253 C A MYO5B Splice_Site p.X1093_splice 0.66 TCGA-18-3421-01 18 54349917 54349917 A G WDR7 Missense_Mutation p.Q118R 0.52 tolerated(0.37) possibly_damaging(0.786) TCGA-18-3421-01 18 60612496 60612496 G C PHLPP1 Missense_Mutation p.E1106Q 0.12 tolerated(0.18) probably_damaging(0.985) TCGA-18-3421-01 18 71816207 71816207 G C TIMM21 Missense_Mutation p.R55T 0.42 tolerated(0.47) benign(0.081) TCGA-18-3421-01 19 10401852 10401852 G C ICAM5 Missense_Mutation p.E63Q 0.21 tolerated(0.19) benign(0.016) TCGA-18-3421-01 19 10445739 10445739 T A ICAM3 Intron 0.29 TCGA-18-3421-01 19 10736965 10736965 C A SLC44A2 Missense_Mutation p.P25H 0.26 deleterious(0) probably_damaging(0.997) TCGA-18-3421-01 19 11533515 11533515 C A CCDC151 Silent p.R377R 0.20 TCGA-18-3421-01 19 12358720 12358720 C G ZNF44 Missense_Mutation p.C332S 0.33 benign(0) TCGA-18-3421-01 19 14748926 14748926 G T EMR3 Missense_Mutation p.T492N 0.19 deleterious(0) probably_damaging(0.981) TCGA-18-3421-01 19 19646197 19646197 C T YJEFN3 Missense_Mutation p.R161W 0.19 deleterious(0.04) possibly_damaging(0.806) TCGA-18-3421-01 19 2043172 2043172 G A MKNK2 Silent p.F148F 0.14 TCGA-18-3421-01 19 22605073 22605073 C A ZNF98 5'UTR 0.14 TCGA-18-3421-01 19 29698533 29698533 G C UQCRFS1 Missense_Mutation p.I249M 0.22 deleterious(0) probably_damaging(1) TCGA-18-3421-01 19 33350756 33350756 C G SLC7A9 Silent p.A288A 0.22 TCGA-18-3421-01 19 36014407 36014407 C A SBSN 3'UTR 0.63 TCGA-18-3421-01 19 36351210 36351210 G C KIRREL2 Missense_Mutation p.V229L 0.22 deleterious(0.02) probably_damaging(0.977) TCGA-18-3421-01 19 38948752 38948752 T C RYR1 Missense_Mutation p.F663L 0.19 probably_damaging(0.96) TCGA-18-3421-01 19 38994876 38994876 A G RYR1 Missense_Mutation p.Y2648C 0.17 possibly_damaging(0.515) TCGA-18-3421-01 19 39734686 39734686 G T IFNL3 Missense_Mutation p.H124N 0.25 deleterious(0.01) possibly_damaging(0.776) TCGA-18-3421-01 19 40006605 40006605 C G SELV Silent p.P251P 0.16 TCGA-18-3421-01 19 41931914 41931914 A C B3GNT8 Missense_Mutation p.L257R 0.25 deleterious(0) probably_damaging(0.994) TCGA-18-3421-01 19 44223961 44223961 G C IRGC Silent p.V417V 0.56 TCGA-18-3421-01 19 46308061 46308061 C T RSPH6A Missense_Mutation p.E368K 0.55 deleterious(0.03) probably_damaging(0.978) TCGA-18-3421-01 19 50475309 50475309 T C VRK3 3'Flank 0.10 TCGA-18-3421-01 19 51226889 51226889 C T CLEC11A Missense_Mutation p.A36V 0.22 deleterious_low_confidence(0.01) benign(0.073) TCGA-18-3421-01 19 51875756 51875756 C A NKG7 Missense_Mutation p.G12C 0.63 deleterious(0) probably_damaging(0.999) TCGA-18-3421-01 19 52497492 52497492 C T ZNF615 Silent p.Q290Q 0.15 TCGA-18-3421-01 19 53945617 53945617 G C TPM3P9 RNA 0.13 TCGA-18-3421-01 19 54515268 54515268 T C CACNG6 Missense_Mutation p.V203A 0.18 tolerated(0.76) benign(0.006) TCGA-18-3421-01 19 54667412 54667412 C - TMC4 Intron 0.08 TCGA-18-3421-01 19 54848764 54848764 G A LILRA4 Missense_Mutation p.R287C 0.48 tolerated(0.13) possibly_damaging(0.846) TCGA-18-3421-01 19 55179359 55179359 C T LILRB4 Silent p.Y412Y 0.15 TCGA-18-3421-01 19 55708523 55708523 T A PTPRH Missense_Mutation p.D651V 0.50 possibly_damaging(0.664) TCGA-18-3421-01 19 58291011 58291011 A C ZNF586 Missense_Mutation p.K352N 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-18-3421-01 19 58565188 58565188 C T ZSCAN1 Silent p.N332N 0.46 TCGA-18-3421-01 19 9047990 9047990 C G MUC16 Missense_Mutation p.S11214T 0.24 benign(0.007) TCGA-18-3421-01 19 9076334 9076334 A T MUC16 Missense_Mutation p.D3704E 0.27 unknown(0) TCGA-18-3421-01 1 100681747 100681747 C T DBT Silent p.L188L 0.22 TCGA-18-3421-01 1 10336422 10336422 G T KIF1B Silent p.A328A 0.46 TCGA-18-3421-01 1 103380328 103380328 G A COL11A1 Missense_Mutation p.P1286S 0.24 unknown(0) TCGA-18-3421-01 1 103471654 103471654 T C COL11A1 Silent p.G587G 0.19 TCGA-18-3421-01 1 10720208 10720208 G A CASZ1 Silent p.H297H 0.45 TCGA-18-3421-01 1 110255769 110255769 G T GSTM5 Silent p.L47L 0.31 TCGA-18-3421-01 1 11297904 11297904 A C MTOR Missense_Mutation p.I735S 0.19 deleterious(0) probably_damaging(0.991) TCGA-18-3421-01 1 115269675 115269675 C A CSDE1 Missense_Mutation p.G511W 0.25 deleterious(0) probably_damaging(1) TCGA-18-3421-01 1 120165764 120165764 C T ZNF697 Missense_Mutation p.R401H 0.35 deleterious(0) probably_damaging(1) TCGA-18-3421-01 1 145474241 145474241 G C ANKRD34A Missense_Mutation p.V305L 0.14 tolerated(0.67) probably_damaging(0.935) TCGA-18-3421-01 1 149871805 149871805 G A BOLA1 Missense_Mutation p.E65K 0.26 deleterious(0) probably_damaging(1) TCGA-18-3421-01 1 152281417 152281417 G T FLG Missense_Mutation p.T1982K 0.49 benign(0.403) TCGA-18-3421-01 1 152285257 152285257 G C FLG Nonsense_Mutation p.S702* 0.43 TCGA-18-3421-01 1 152733867 152733867 A G KPRP 3'UTR 0.22 TCGA-18-3421-01 1 155629621 155629621 C T YY1AP1 Missense_Mutation p.E832K 0.23 tolerated_low_confidence(0.17) benign(0.166) TCGA-18-3421-01 1 158747277 158747277 C - OR6N2 Frame_Shift_Del p.R50Hfs*85 0.27 TCGA-18-3421-01 1 159504988 159504988 G T OR10J5 Missense_Mutation p.D270E 0.41 deleterious(0.01) probably_damaging(0.986) TCGA-18-3421-01 1 160920480 160920480 G C ITLN2 Missense_Mutation p.Q155E 0.11 tolerated(0.19) benign(0.176) TCGA-18-3421-01 1 169519234 169519234 G C F5 Missense_Mutation p.I472M 0.38 tolerated(0.08) possibly_damaging(0.739) TCGA-18-3421-01 1 175046647 175046647 C A TNN Silent p.P31P 0.41 TCGA-18-3421-01 1 175306756 175306756 A C TNR Missense_Mutation p.L1148V 0.30 tolerated(0.37) benign(0.245) TCGA-18-3421-01 1 17593278 17593278 A C PADI3 Missense_Mutation p.D158A 0.17 tolerated(0.08) benign(0.089) TCGA-18-3421-01 1 185703828 185703828 G A HMCN1 5'UTR 0.49 TCGA-18-3421-01 1 196971780 196971780 T G CFHR5 Nonsense_Mutation p.L439* 0.12 TCGA-18-3421-01 1 19992161 19992161 G A HTR6 5'UTR 0.25 TCGA-18-3421-01 1 203192298 203192298 A G CHIT1 Silent p.Y190Y 0.32 TCGA-18-3421-01 1 203809458 203809458 A T ZC3H11A Missense_Mutation p.E333V 0.23 deleterious(0) probably_damaging(1) TCGA-18-3421-01 1 22021658 22021658 T C USP48 Silent p.Q928Q 0.18 TCGA-18-3421-01 1 227071548 227071548 T C PSEN2 Missense_Mutation p.V95A 0.11 deleterious(0.02) probably_damaging(0.992) TCGA-18-3421-01 1 238050715 238050715 G T ZP4 Missense_Mutation p.L234M 0.16 tolerated(0.08) possibly_damaging(0.641) TCGA-18-3421-01 1 247040362 247040362 G A AHCTF1 Nonsense_Mutation p.Q952* 0.21 TCGA-18-3421-01 1 247875683 247875683 G A OR6F1 Silent p.A125A 0.15 TCGA-18-3421-01 1 27238309 27238309 C A NR0B2 3'UTR 0.13 TCGA-18-3421-01 1 31418279 31418279 G C PUM1 Missense_Mutation p.Q970E 0.16 deleterious(0.01) possibly_damaging(0.501) TCGA-18-3421-01 1 32502535 32502535 G C KHDRBS1 Missense_Mutation p.E266Q 0.19 tolerated(0.07) possibly_damaging(0.621) TCGA-18-3421-01 1 36886200 36886200 T A OSCP1 Missense_Mutation p.N279I 0.17 deleterious(0) probably_damaging(0.921) TCGA-18-3421-01 1 39898246 39898246 G A MACF1 Missense_Mutation p.E3731K 0.23 probably_damaging(0.999) TCGA-18-3421-01 1 40777194 40777194 A T COL9A2 Missense_Mutation p.L166Q 0.17 tolerated(0.17) probably_damaging(0.928) TCGA-18-3421-01 1 45340357 45340357 C G EIF2B3 Missense_Mutation p.E399Q 0.21 tolerated(0.2) benign(0.097) TCGA-18-3421-01 1 62739162 62739162 G T KANK4 Silent p.T538T 0.59 TCGA-18-3421-01 1 64669723 64669723 C T UBE2U 5'UTR 0.37 TCGA-18-3421-01 1 67138998 67138998 C T SGIP1 Missense_Mutation p.P199S 0.18 tolerated(0.13) benign(0.194) TCGA-18-3421-01 1 67155908 67155908 C A SGIP1 Missense_Mutation p.S493R 0.49 deleterious(0) probably_damaging(0.944) TCGA-18-3421-01 1 68903988 68903988 A C RPE65 Missense_Mutation p.V337G 0.35 deleterious(0) probably_damaging(0.998) TCGA-18-3421-01 1 70503946 70503946 C A LRRC7 Missense_Mutation p.D775E 0.42 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-18-3421-01 1 75622726 75622726 G T LHX8 Missense_Mutation p.G320V 0.33 tolerated(0.14) benign(0.252) TCGA-18-3421-01 1 90482967 90482967 T G ZNF326 Missense_Mutation p.L340V 0.17 deleterious(0.01) probably_damaging(0.973) TCGA-18-3421-01 1 92649444 92649444 C G KIAA1107 Missense_Mutation p.L1208V 0.50 tolerated(0.06) benign(0.356) TCGA-18-3421-01 1 9661495 9661495 G C TMEM201 Silent p.L313L 0.16 TCGA-18-3421-01 1 979737 979737 C T AGRN Silent p.T724T 0.26 TCGA-18-3421-01 20 10036305 10036305 C G ANKEF1 Silent p.T776T 0.18 TCGA-18-3421-01 20 13055086 13055086 C A SPTLC3 Missense_Mutation p.T183K 0.20 tolerated(0.07) benign(0.119) TCGA-18-3421-01 20 20177290 20177290 G T C20orf26 Missense_Mutation p.G556V 0.24 deleterious(0) benign(0.442) TCGA-18-3421-01 20 23432461 23432461 G A CST11 Missense_Mutation p.L109F 0.25 deleterious(0.01) probably_damaging(0.974) TCGA-18-3421-01 20 24523810 24523810 T C SYNDIG1 Missense_Mutation p.I26T 0.19 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-18-3421-01 20 36642218 36642218 T C TTI1 Translation_Start_Site p.M1? 0.26 deleterious(0) probably_damaging(0.942) TCGA-18-3421-01 20 36946843 36946843 C T BPI Missense_Mutation p.S214F 0.15 deleterious(0.01) probably_damaging(0.936) TCGA-18-3421-01 20 37146564 37146564 C G RALGAPB Silent p.L446L 0.19 TCGA-18-3421-01 20 49509695 49509695 G A ADNP Missense_Mutation p.S519L 0.11 tolerated(0.49) possibly_damaging(0.549) TCGA-18-3421-01 20 58330363 58330363 C T PHACTR3 Missense_Mutation p.T162M 0.58 tolerated(0.09) benign(0.003) TCGA-18-3421-01 21 10906916 10906916 C A TPTE Nonsense_Mutation p.G549* 0.10 TCGA-18-3421-01 21 10906937 10906937 T A TPTE Missense_Mutation p.T542S 0.11 tolerated_low_confidence(0.75) benign(0) TCGA-18-3421-01 21 38877629 38877629 G C DYRK1A Missense_Mutation p.G428A 0.26 deleterious(0.02) probably_damaging(0.995) TCGA-18-3421-01 21 43412128 43412128 G A ZBTB21 Missense_Mutation p.P693S 0.14 tolerated(0.15) possibly_damaging(0.863) TCGA-18-3421-01 21 43867227 43867227 G C UBASH3A Missense_Mutation p.V637L 0.23 deleterious(0.02) benign(0.002) TCGA-18-3421-01 21 45978364 45978364 A C KRTAP10-3 Missense_Mutation p.C79G 0.27 deleterious(0.01) unknown(0) TCGA-18-3421-01 22 17583061 17583061 A T IL17RA Missense_Mutation p.T211S 0.10 tolerated(0.66) benign(0.002) TCGA-18-3421-01 22 26270319 26270319 A G MYO18B Missense_Mutation p.I1340V 0.31 tolerated(0.13) benign(0.119) TCGA-18-3421-01 22 30189468 30189468 C T ASCC2 Silent p.Q600Q 0.12 TCGA-18-3421-01 22 37407247 37407247 C G TST Missense_Mutation p.D239H 0.30 deleterious(0) possibly_damaging(0.856) TCGA-18-3421-01 22 37875441 37875441 C - MFNG Frame_Shift_Del p.G168Efs*5 0.44 TCGA-18-3421-01 22 38524296 38524296 G A PLA2G6 Missense_Mutation p.P443L 0.40 tolerated(0.08) benign(0.001) TCGA-18-3421-01 22 39884666 39884666 C T MGAT3 Silent p.G438G 0.40 TCGA-18-3421-01 22 41318337 41318337 G T XPNPEP3 Missense_Mutation p.R352S 0.16 tolerated(0.09) benign(0.101) TCGA-18-3421-01 22 46760592 46760592 G A CELSR1 Nonsense_Mutation p.Q2866* 0.33 TCGA-18-3421-01 22 46832148 46832148 T C CELSR1 Missense_Mutation p.N1482S 0.33 deleterious(0.01) possibly_damaging(0.646) TCGA-18-3421-01 2 102499117 102499117 G A MAP4K4 Missense_Mutation p.D1019N 0.38 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-18-3421-01 2 133402669 133402669 C A GPR39 Intron 0.23 TCGA-18-3421-01 2 133402693 133402693 G A GPR39 Silent p.L292L 0.23 TCGA-18-3421-01 2 136575393 136575393 T G LCT Missense_Mutation p.S409R 0.30 deleterious(0) probably_damaging(0.965) TCGA-18-3421-01 2 141055532 141055532 G T LRP1B Missense_Mutation p.P4271H 0.16 probably_damaging(0.971) TCGA-18-3421-01 2 145157348 145157348 T A ZEB2 Missense_Mutation p.N469I 0.39 deleterious(0) probably_damaging(0.999) TCGA-18-3421-01 2 166895999 166895999 C A SCN1A Silent p.T841T 0.32 TCGA-18-3421-01 2 170042418 170042418 T C LRP2 Missense_Mutation p.K3147R 0.29 benign(0.071) TCGA-18-3421-01 2 176984011 176984011 C G HOXD10 3'UTR 0.23 TCGA-18-3421-01 2 179406245 179406245 C G TTN Missense_Mutation p.W32520S 0.17 TCGA-18-3421-01 2 179544074 179544074 G A TTN Missense_Mutation p.P11245L 0.32 TCGA-18-3421-01 2 179605665 179605667 TAG AA TTN Frame_Shift_Del p.A4098Vfs*6 0.25 TCGA-18-3421-01 2 179623783 179623783 C T TTN Missense_Mutation p.E3411K 0.27 TCGA-18-3421-01 2 187712502 187712502 G C ZSWIM2 Missense_Mutation p.H62Q 0.41 deleterious(0) probably_damaging(0.984) TCGA-18-3421-01 2 210558495 210558495 A C MAP2 Missense_Mutation p.Q534P 0.25 deleterious_low_confidence(0.04) benign(0.02) TCGA-18-3421-01 2 21233469 21233469 C A APOB Missense_Mutation p.V2091L 0.29 benign(0) TCGA-18-3421-01 2 234869468 234869468 C - TRPM8 Frame_Shift_Del p.K472Sfs*11 0.29 TCGA-18-3421-01 2 39240652 39240652 T A SOS1 Nonsense_Mutation p.R706* 0.16 TCGA-18-3421-01 2 48915114 48915114 G A LHCGR Silent p.L608L 0.16 TCGA-18-3421-01 2 64169644 64169644 G A VPS54 Silent p.L451L 0.29 TCGA-18-3421-01 2 75923427 75923427 A G GCFC2 Silent p.D244D 0.49 TCGA-18-3421-01 2 89247008 89247008 C A IGKV1-5 Missense_Mutation p.W54C 0.21 tolerated(0.09) benign(0.008) TCGA-18-3421-01 3 101540798 101540798 G T NXPE3 Nonstop_Mutation p.*560Yext*17 0.25 TCGA-18-3421-01 3 111427219 111427219 G A PLCXD2 Missense_Mutation p.E204K 0.12 tolerated(0.05) benign(0.027) TCGA-18-3421-01 3 111603433 111603433 G C PHLDB2 Missense_Mutation p.R170P 0.15 deleterious_low_confidence(0) benign(0.051) TCGA-18-3421-01 3 119306567 119306567 A G ADPRH Missense_Mutation p.T306A 0.58 deleterious(0) probably_damaging(0.957) TCGA-18-3421-01 3 119501587 119501587 G C NR1I2 5'UTR 0.18 TCGA-18-3421-01 3 133098900 133098900 A G TMEM108 Silent p.T115T 0.17 TCGA-18-3421-01 3 1363343 1363343 C T CNTN6 Silent p.P257P 0.60 TCGA-18-3421-01 3 139172003 139172003 C A RBP2 Silent p.L120L 0.14 TCGA-18-3421-01 3 148749908 148749908 G C HLTF 3'UTR 0.33 TCGA-18-3421-01 3 180322794 180322794 A T TTC14 Missense_Mutation p.S286C 0.29 deleterious(0.05) benign(0.119) TCGA-18-3421-01 3 196675077 196675077 G C PIGZ Missense_Mutation p.L231V 0.57 tolerated(0.13) benign(0.256) TCGA-18-3421-01 3 33109729 33109729 G A GLB1 Silent p.S150S 0.20 TCGA-18-3421-01 3 47030752 47030752 G T NBEAL2 Silent p.L118L 0.50 TCGA-18-3421-01 3 49044337 49044337 C G P4HTM Silent p.L563L 0.50 TCGA-18-3421-01 3 49065169 49065169 C T IMPDH2 Missense_Mutation p.E169K 0.48 tolerated(0.81) benign(0.005) TCGA-18-3421-01 3 51897351 51897351 C T IQCF2 Missense_Mutation p.H154Y 0.47 deleterious(0.01) probably_damaging(0.998) TCGA-18-3421-01 3 52831910 52831910 G - ITIH3 Frame_Shift_Del p.G210Efs*21 0.29 TCGA-18-3421-01 3 89462338 89462338 G T EPHA3 Missense_Mutation p.D604Y 0.29 deleterious(0) benign(0.378) TCGA-18-3421-01 4 109088716 109088716 G C LEF1 Missense_Mutation p.H70D 0.45 tolerated(0.46) possibly_damaging(0.897) TCGA-18-3421-01 4 109765719 109765719 C A COL25A1 Missense_Mutation p.G529C 0.52 deleterious(0) probably_damaging(1) TCGA-18-3421-01 4 128688282 128688282 T A SLC25A31 Missense_Mutation p.D180E 0.31 deleterious(0.03) possibly_damaging(0.718) TCGA-18-3421-01 4 155156162 155156162 C T DCHS2 Silent p.R2759R 0.38 TCGA-18-3421-01 4 155510624 155510624 C T FGA Missense_Mutation p.D49N 0.45 deleterious(0) possibly_damaging(0.543) TCGA-18-3421-01 4 156135553 156135572 CCACCTAGAGAGCAAGATCT - NPY2R Frame_Shift_Del p.H155Qfs*32 0.14 TCGA-18-3421-01 4 159627943 159627943 T C ETFDH Missense_Mutation p.I544T 0.37 tolerated(0.08) benign(0.012) TCGA-18-3421-01 4 173232904 173232904 G A GALNTL6 Splice_Site p.X129_splice 0.19 TCGA-18-3421-01 4 42895358 42895358 T C GRXCR1 Silent p.S25S 0.45 TCGA-18-3421-01 4 48422291 48422291 C G SLAIN2 Missense_Mutation p.P504A 0.20 tolerated(0.78) benign(0.229) TCGA-18-3421-01 4 62598664 62598664 C A LPHN3 Missense_Mutation p.P196Q 0.32 tolerated(0.63) probably_damaging(0.967) TCGA-18-3421-01 4 677144 677144 G T MFSD7 Missense_Mutation p.Q336K 0.25 tolerated(0.35) benign(0.103) TCGA-18-3421-01 4 6882641 6882641 G T KIAA0232 Missense_Mutation p.G1379V 0.12 deleterious_low_confidence(0.01) benign(0.153) TCGA-18-3421-01 5 118970254 118970254 A G FAM170A Missense_Mutation p.M271V 0.56 tolerated(1) benign(0.001) TCGA-18-3421-01 5 137781195 137781195 C T REEP2 Missense_Mutation p.P200S 0.44 tolerated(0.46) benign(0.008) TCGA-18-3421-01 5 139851895 139851895 T G ANKHD1 Intron 0.39 TCGA-18-3421-01 5 140083567 140083567 G C ZMAT2 Missense_Mutation p.G101R 0.17 deleterious(0) probably_damaging(0.998) TCGA-18-3421-01 5 140236732 140236732 G A PCDHA10 Missense_Mutation p.V367I 0.25 deleterious_low_confidence(0.03) possibly_damaging(0.826) TCGA-18-3421-01 5 140554148 140554148 C A PCDHB7 Silent p.R578R 0.58 TCGA-18-3421-01 5 140762746 140762746 G C PCDHGA7 Missense_Mutation p.E94Q 0.60 deleterious_low_confidence(0.01) possibly_damaging(0.718) TCGA-18-3421-01 5 141243098 141243098 A T PCDH1 Missense_Mutation p.L933Q 0.52 tolerated(0.21) probably_damaging(1) TCGA-18-3421-01 5 14690237 14690237 C T FAM105B Silent p.L228L 0.10 TCGA-18-3421-01 5 149583559 149583559 C G SLC6A7 Missense_Mutation p.I430M 0.35 tolerated(0.11) benign(0.276) TCGA-18-3421-01 5 154396080 154396080 C A KIF4B Missense_Mutation p.S887R 0.60 tolerated(0.23) benign(0.002) TCGA-18-3421-01 5 160097524 160097524 C G ATP10B Missense_Mutation p.L207F 0.43 deleterious(0) probably_damaging(1) TCGA-18-3421-01 5 179668078 179668078 G A MAPK9 Missense_Mutation p.R317C 0.47 deleterious(0.03) possibly_damaging(0.864) TCGA-18-3421-01 5 179745898 179745898 C G GFPT2 Missense_Mutation p.V285L 0.10 tolerated(0.18) benign(0.004) TCGA-18-3421-01 5 24492992 24492992 C T CDH10 Missense_Mutation p.G520S 0.17 tolerated(0.79) benign(0.35) TCGA-18-3421-01 5 39202153 39202153 A T FYB Missense_Mutation p.L314M 0.13 deleterious(0.02) benign(0.109) TCGA-18-3421-01 5 41065544 41065545 - A MROH2B Frame_Shift_Ins p.A84Cfs*4 0.20 TCGA-18-3421-01 5 45262236 45262236 C G HCN1 Silent p.T820T 0.31 TCGA-18-3421-01 5 50090868 50090868 A T PARP8 Missense_Mutation p.R349W 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.598) TCGA-18-3421-01 5 52223413 52223413 G A ITGA1 Splice_Site p.X872_splice 0.13 TCGA-18-3421-01 5 54404139 54404139 C T GZMA Nonsense_Mutation p.R182* 0.11 TCGA-18-3421-01 5 55422770 55422770 T C ANKRD55 Missense_Mutation p.Q259R 0.10 deleterious(0.02) probably_damaging(0.998) TCGA-18-3421-01 5 60834670 60834670 C T ZSWIM6 Missense_Mutation p.S804L 0.17 tolerated(0.13) benign(0.007) TCGA-18-3421-01 5 72469360 72469360 C T TMEM174 Missense_Mutation p.S97F 0.38 deleterious(0) probably_damaging(0.948) TCGA-18-3421-01 5 75594662 75594662 G C SV2C Missense_Mutation p.V516L 0.33 tolerated(1) benign(0.001) TCGA-18-3421-01 6 100895257 100895257 G T SIM1 Nonsense_Mutation p.Y295* 0.45 TCGA-18-3421-01 6 130454629 130454629 C T L3MBTL3 Nonsense_Mutation p.Q667* 0.40 TCGA-18-3421-01 6 130454633 130454633 G T L3MBTL3 Missense_Mutation p.R668L 0.42 tolerated(0.74) benign(0.001) TCGA-18-3421-01 6 130505658 130505658 C A SAMD3 Missense_Mutation p.C165F 0.38 tolerated(0.41) benign(0.27) TCGA-18-3421-01 6 151687860 151687860 G C ZBTB2 Missense_Mutation p.A114G 0.18 tolerated(0.3) probably_damaging(0.994) TCGA-18-3421-01 6 155761124 155761124 C G NOX3 Missense_Mutation p.V212L 0.46 tolerated(0.11) benign(0.017) TCGA-18-3421-01 6 158454564 158454564 T G SYNJ2 Missense_Mutation p.V188G 0.22 tolerated(0.54) benign(0.006) TCGA-18-3421-01 6 160670411 160670411 C T SLC22A2 Missense_Mutation p.E227K 0.15 deleterious(0) probably_damaging(1) TCGA-18-3421-01 6 167550498 167550498 G T CCR6 Silent p.V260V 0.57 TCGA-18-3421-01 6 26205085 26205085 G A HIST1H4E Silent p.V71V 0.16 TCGA-18-3421-01 6 27776248 27776248 C T HIST1H2AI Silent p.A87A 0.16 TCGA-18-3421-01 6 29639388 29639388 T C MOG 3'UTR 0.28 TCGA-18-3421-01 6 31079766 31079766 C A C6orf15 Nonsense_Mutation p.E124* 0.20 TCGA-18-3421-01 6 38854588 38854588 C A DNAH8 Missense_Mutation p.Q2544K 0.16 probably_damaging(1) TCGA-18-3421-01 6 38854589 38854589 A G DNAH8 Missense_Mutation p.Q2544R 0.16 probably_damaging(1) TCGA-18-3421-01 6 47649184 47649184 A G GPR111 Missense_Mutation p.I297V 0.28 tolerated(0.27) benign(0.015) TCGA-18-3421-01 6 47847514 47847514 T A PTCHD4 Missense_Mutation p.S356C 0.24 deleterious(0) probably_damaging(0.995) TCGA-18-3421-01 6 49803157 49803157 C G CRISP1 Splice_Site p.X208_splice 0.38 TCGA-18-3421-01 6 51612743 51612743 G T PKHD1 Missense_Mutation p.A3224D 0.26 deleterious(0) probably_damaging(0.997) TCGA-18-3421-01 6 70065752 70065752 G C BAI3 Missense_Mutation p.V1199L 0.24 deleterious(0.02) benign(0.026) TCGA-18-3421-01 6 74161906 74161906 G C MB21D1 5'UTR 0.20 TCGA-18-3421-01 6 86324913 86324913 C T SYNCRIP Missense_Mutation p.R478H 0.30 tolerated(0.52) unknown(0) TCGA-18-3421-01 6 88299857 88299857 G A ORC3 5'UTR 0.42 TCGA-18-3421-01 6 97533046 97533046 C T KLHL32 Silent p.D152D 0.35 TCGA-18-3421-01 7 100609743 100609743 G A MUC3A Intron 0.22 TCGA-18-3421-01 7 104742347 104742347 A G KMT2E Silent p.E634E 0.64 TCGA-18-3421-01 7 105641957 105641957 G T CDHR3 Missense_Mutation p.V255L 0.61 deleterious(0) possibly_damaging(0.782) TCGA-18-3421-01 7 107399658 107399658 A G CBLL1 3'UTR 0.28 TCGA-18-3421-01 7 107818549 107818549 C T NRCAM Missense_Mutation p.A954T 0.11 tolerated(0.1) benign(0.347) TCGA-18-3421-01 7 117400707 117400707 C T CTTNBP2 Missense_Mutation p.G985D 0.16 tolerated(0.18) benign(0.012) TCGA-18-3421-01 7 121731799 121731799 C G AASS Missense_Mutation p.L658F 0.18 deleterious(0.02) probably_damaging(0.998) TCGA-18-3421-01 7 128315900 128315900 A G FAM71F2 Missense_Mutation p.I118V 0.12 tolerated(0.12) benign(0.083) TCGA-18-3421-01 7 128493535 128493535 T A FLNC Nonsense_Mutation p.L2074* 0.70 TCGA-18-3421-01 7 138552813 138552813 C A KIAA1549 Missense_Mutation p.D1613Y 0.48 deleterious(0) probably_damaging(1) TCGA-18-3421-01 7 140218496 140218496 G T DENND2A 3'UTR 0.51 TCGA-18-3421-01 7 150501463 150501463 C G TMEM176A Missense_Mutation p.T190S 0.08 tolerated(1) benign(0.004) TCGA-18-3421-01 7 150558048 150558048 G A AOC1 Silent p.V669V 0.16 TCGA-18-3421-01 7 15584478 15584478 G C AGMO Missense_Mutation p.P110A 0.30 deleterious(0.01) possibly_damaging(0.792) TCGA-18-3421-01 7 20198760 20198760 A G MACC1 Silent p.G408G 0.21 TCGA-18-3421-01 7 20199112 20199112 T C MACC1 Missense_Mutation p.K291R 0.23 tolerated(0.07) benign(0.055) TCGA-18-3421-01 7 25266476 25266476 C G NPVF Missense_Mutation p.G103A 0.34 tolerated(0.17) possibly_damaging(0.572) TCGA-18-3421-01 7 2968256 2968256 T A CARD11 Missense_Mutation p.Y577F 0.09 tolerated(0.68) benign(0.032) TCGA-18-3421-01 7 38431391 38431391 T A AMPH Silent p.A612A 0.27 TCGA-18-3421-01 7 44193036 44193036 C A GCK Missense_Mutation p.Q25H 0.38 tolerated(0.17) benign(0.002) TCGA-18-3421-01 7 47947844 47947844 C G PKD1L1 Missense_Mutation p.G411A 0.16 tolerated(0.07) possibly_damaging(0.83) TCGA-18-3421-01 7 7398270 7398270 T A COL28A1 Missense_Mutation p.Q1124H 0.34 deleterious(0.01) benign(0.014) TCGA-18-3421-01 7 91660895 91660895 C G AKAP9 Missense_Mutation p.Q1439E 0.07 benign(0.015) TCGA-18-3421-01 7 99809470 99809470 T G STAG3 Missense_Mutation p.S1190A 0.13 tolerated_low_confidence(0.25) benign(0.004) TCGA-18-3421-01 8 103664484 103664484 C G KLF10 Missense_Mutation p.V60L 0.09 tolerated(1) benign(0) TCGA-18-3421-01 8 10390507 10390507 C G PRSS55 Silent p.T230T 0.35 TCGA-18-3421-01 8 117869513 117869513 T C RAD21 Silent p.G227G 0.46 TCGA-18-3421-01 8 123964361 123964361 A T ZHX2 Missense_Mutation p.E204V 0.50 tolerated(0.1) benign(0.411) TCGA-18-3421-01 8 124250108 124250108 T C C8orf76 Missense_Mutation p.Q96R 0.13 tolerated(0.14) benign(0.056) TCGA-18-3421-01 8 139164022 139164022 G A FAM135B Missense_Mutation p.A899V 0.58 tolerated_low_confidence(0.39) benign(0.002) TCGA-18-3421-01 8 139277998 139277998 G C FAM135B Missense_Mutation p.P82R 0.13 tolerated(0.3) benign(0.016) TCGA-18-3421-01 8 146156985 146156985 C T ZNF16 Silent p.Q396Q 0.20 TCGA-18-3421-01 8 15601052 15601052 G A TUSC3 Missense_Mutation p.A290T 0.23 tolerated(0.06) benign(0.094) TCGA-18-3421-01 8 17159652 17159652 G A MTMR7 Intron 0.32 TCGA-18-3421-01 8 21766684 21766684 A G DOK2 3'UTR 0.16 TCGA-18-3421-01 8 26218532 26218532 C T PPP2R2A Missense_Mutation p.P178S 0.14 deleterious(0.04) possibly_damaging(0.74) TCGA-18-3421-01 8 27762124 27762124 C T SCARA5 Intron 0.35 TCGA-18-3421-01 8 28210186 28210186 G A ZNF395 Missense_Mutation p.S275F 0.16 deleterious(0) probably_damaging(0.999) TCGA-18-3421-01 8 28321168 28321168 A G FBXO16 Silent p.F101F 0.11 TCGA-18-3421-01 8 48855900 48855900 C T PRKDC Missense_Mutation p.A279T 0.34 probably_damaging(0.933) TCGA-18-3421-01 8 52252215 52252215 A T PXDNL Missense_Mutation p.I1372N 0.25 deleterious(0) benign(0.14) TCGA-18-3421-01 8 52733117 52733117 A G PCMTD1 Missense_Mutation p.F290L 0.05 tolerated(0.17) benign(0.008) TCGA-18-3421-01 8 623443 623443 C A ERICH1 Missense_Mutation p.E303D 0.11 tolerated(0.17) benign(0.059) TCGA-18-3421-01 8 6302384 6302384 A G MCPH1 Missense_Mutation p.I381V 0.22 tolerated(0.42) benign(0.074) TCGA-18-3421-01 8 77767709 77767709 C G ZFHX4 Missense_Mutation p.P2851R 0.23 benign(0.001) TCGA-18-3421-01 9 118974211 118974211 G T PAPPA Missense_Mutation p.D640Y 0.45 deleterious(0) probably_damaging(0.961) TCGA-18-3421-01 9 120475065 120475065 C A TLR4 Missense_Mutation p.P220Q 0.49 deleterious(0.01) possibly_damaging(0.804) TCGA-18-3421-01 9 125437632 125437632 C G OR1L3 Missense_Mutation p.T75R 0.28 deleterious(0) possibly_damaging(0.846) TCGA-18-3421-01 9 138416976 138416976 A G LCN1 Splice_Site p.X169_splice 0.49 TCGA-18-3421-01 9 139333230 139333230 C A INPP5E Silent p.S214S 0.71 TCGA-18-3421-01 9 77377583 77377583 C A TRPM6 Missense_Mutation p.R1335M 0.55 tolerated_low_confidence(0.27) benign(0.345) TCGA-18-3421-01 9 84606116 84606116 C T SPATA31D1 Missense_Mutation p.P244L 0.46 deleterious(0.04) possibly_damaging(0.553) TCGA-18-3421-01 9 99699593 99699593 G A NUTM2G Silent p.V410V 0.38 TCGA-18-3421-01 X 100515622 100515622 C A DRP2 3'UTR 0.69 TCGA-18-3421-01 X 105149285 105149285 C G NRK Missense_Mutation p.A265G 0.19 deleterious(0) probably_damaging(0.944) TCGA-18-3421-01 X 117749584 117749584 G C DOCK11 Missense_Mutation p.E1068Q 0.47 tolerated(0.06) possibly_damaging(0.762) TCGA-18-3421-01 X 117814528 117814528 A G DOCK11 Silent p.T1848T 0.67 TCGA-18-3421-01 X 117959765 117959765 G T ZCCHC12 Missense_Mutation p.R186S 0.58 tolerated(0.42) benign(0.016) TCGA-18-3421-01 X 1401640 1401640 A C CSF2RA Missense_Mutation p.H15P 0.14 deleterious(0.05) benign(0.094) TCGA-18-3421-01 X 148037237 148037237 G C AFF2 Missense_Mutation p.E554D 0.29 tolerated(0.19) probably_damaging(0.992) TCGA-18-3421-01 X 1712489 1712489 C A AKAP17A Missense_Mutation p.S45Y 0.28 deleterious(0) probably_damaging(0.996) TCGA-18-3421-01 X 34148818 34148818 C G FAM47A Silent p.R526R 0.62 TCGA-18-3421-01 X 34149076 34149076 G A FAM47A Silent p.D440D 0.50 TCGA-18-3421-01 X 50121135 50121135 T A DGKK RNA 0.24 TCGA-18-3421-01 X 73067615 73067615 C T XIST RNA 0.69 TCGA-18-3421-01 X 73069187 73069187 G T XIST RNA 0.21 TCGA-18-3421-01 X 91456402 91456402 C A PCDH11X Missense_Mutation p.T1021N 0.48 tolerated(0.45) benign(0.004) TCGA-18-3421-01 X 91456403 91456403 C A PCDH11X Silent p.T1021T 0.48 TCGA-18-4083-01 10 124177449 124177449 G T PLEKHA1 Missense_Mutation p.D216Y 0.21 deleterious(0) probably_damaging(1) TCGA-18-4083-01 10 127441453 127441453 C G EDRF1 Missense_Mutation p.I1121M 0.19 tolerated(0.06) possibly_damaging(0.495) TCGA-18-4083-01 10 127684007 127684007 A C FANK1 Missense_Mutation p.H113P 0.58 deleterious(0.01) possibly_damaging(0.701) TCGA-18-4083-01 10 128936119 128936119 C T FAM196A Nonsense_Mutation p.W474* 0.56 TCGA-18-4083-01 10 131666117 131666117 C T EBF3 Missense_Mutation p.V272I 0.20 tolerated(0.07) benign(0.081) TCGA-18-4083-01 10 17646017 17646017 C A PTPLA Missense_Mutation p.R96L 0.15 tolerated(0.11) possibly_damaging(0.829) TCGA-18-4083-01 10 28032179 28032179 C A MKX Missense_Mutation p.G56C 0.26 deleterious_low_confidence(0.03) possibly_damaging(0.799) TCGA-18-4083-01 10 28284072 28284072 G A ARMC4 5'UTR 0.27 TCGA-18-4083-01 10 58119447 58119447 C A ZWINT Splice_Site p.X141_splice 0.29 TCGA-18-4083-01 10 75198107 75198107 C G PPP3CB Missense_Mutation p.E491Q 0.25 deleterious(0) probably_damaging(0.998) TCGA-18-4083-01 10 95441274 95441274 T C FRA10AC1 Silent p.L250L 0.31 TCGA-18-4083-01 10 96967139 96967139 A T C10orf129 Missense_Mutation p.Y193F 0.37 deleterious(0.01) benign(0.222) TCGA-18-4083-01 11 1020131 1020131 G T MUC6 Missense_Mutation p.P1256Q 0.28 unknown(0) TCGA-18-4083-01 11 102587099 102587099 C A MMP8 Missense_Mutation p.C279F 0.22 deleterious(0) probably_damaging(0.999) TCGA-18-4083-01 11 103908027 103908027 G A DDI1 Silent p.L159L 0.46 TCGA-18-4083-01 11 106680922 106680922 T A GUCY1A2 Missense_Mutation p.I497F 0.25 deleterious(0) probably_damaging(0.999) TCGA-18-4083-01 11 108044095 108044095 G A NPAT Missense_Mutation p.S539L 0.17 tolerated(0.15) benign(0.234) TCGA-18-4083-01 11 1162244 1162244 C T MUC5AC Missense_Mutation p.L585F 0.22 deleterious(0.02) possibly_damaging(0.826) TCGA-18-4083-01 11 124310260 124310260 C A OR8B8 Missense_Mutation p.C241F 0.48 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-18-4083-01 11 128840518 128840518 C A ARHGAP32 Missense_Mutation p.Q1516H 0.25 deleterious_low_confidence(0.03) benign(0.002) TCGA-18-4083-01 11 19246331 19246331 G A E2F8 Silent p.T826T 0.25 TCGA-18-4083-01 11 237137 237137 A T PSMD13 Missense_Mutation p.T30S 0.16 tolerated(0.21) benign(0.012) TCGA-18-4083-01 11 32122142 32122142 G A RCN1 Missense_Mutation p.D226N 0.26 tolerated(0.08) possibly_damaging(0.501) TCGA-18-4083-01 11 33049272 33049272 G C DEPDC7 Missense_Mutation p.A169P 0.16 tolerated(0.25) benign(0.001) TCGA-18-4083-01 11 36597771 36597771 C A RAG1 Missense_Mutation p.R973S 0.24 deleterious_low_confidence(0.01) probably_damaging(0.953) TCGA-18-4083-01 11 43923105 43923105 G C ALKBH3 Missense_Mutation p.E167Q 0.48 tolerated(0.25) benign(0.042) TCGA-18-4083-01 11 47345855 47345855 C T MADD Missense_Mutation p.R1528C 0.13 deleterious(0) probably_damaging(0.999) TCGA-18-4083-01 11 48285677 48285677 G C OR4X1 Missense_Mutation p.V89L 0.21 deleterious(0) benign(0.043) TCGA-18-4083-01 11 49178359 49178359 C A FOLH1 Missense_Mutation p.R511S 0.17 tolerated(0.3) benign(0.042) TCGA-18-4083-01 11 5530016 5530016 T C UBQLN3 Missense_Mutation p.Y258C 0.48 deleterious(0) probably_damaging(0.929) TCGA-18-4083-01 11 55563389 55563389 A G OR5D14 Missense_Mutation p.M120V 0.23 deleterious(0) probably_damaging(0.967) TCGA-18-4083-01 11 55587515 55587515 T A OR5D18 Missense_Mutation p.M137K 0.21 deleterious(0) possibly_damaging(0.585) TCGA-18-4083-01 11 55872720 55872720 T C OR8H2 Missense_Mutation p.S68P 0.22 deleterious(0) probably_damaging(0.984) TCGA-18-4083-01 11 55944987 55944987 G T OR5J2 Missense_Mutation p.K298N 0.27 deleterious(0.01) benign(0.111) TCGA-18-4083-01 11 57080095 57080095 C A TNKS1BP1 Silent p.L689L 0.49 TCGA-18-4083-01 11 58978896 58978896 G A MPEG1 Silent p.G481G 0.24 TCGA-18-4083-01 11 60184273 60184273 C T MS4A14 Missense_Mutation p.A644V 0.24 tolerated(0.73) benign(0.008) TCGA-18-4083-01 11 6129308 6129308 C A OR56B4 Silent p.L100L 0.25 TCGA-18-4083-01 11 62415818 62415818 C A INTS5 Missense_Mutation p.L578F 0.47 tolerated(0.06) benign(0.158) TCGA-18-4083-01 11 64825411 64825411 C A NAALADL1 Missense_Mutation p.G139V 0.28 tolerated(0.07) benign(0.071) TCGA-18-4083-01 11 65485848 65485848 C A RNASEH2C 3'UTR 0.21 TCGA-18-4083-01 11 6703635 6703635 T A MRPL17 Splice_Site p.X82_splice 0.24 TCGA-18-4083-01 11 68205913 68205913 G C LRP5 Splice_Site p.X1371_splice 0.16 TCGA-18-4083-01 11 85445656 85445656 C G SYTL2 Missense_Mutation p.R238T 0.03 deleterious(0) probably_damaging(0.997) TCGA-18-4083-01 11 88911393 88911393 G T TYR Missense_Mutation p.C91F 0.28 deleterious(0) probably_damaging(0.999) TCGA-18-4083-01 11 93097425 93097425 C A CCDC67 Missense_Mutation p.P133T 0.35 deleterious(0.01) possibly_damaging(0.575) TCGA-18-4083-01 11 93097426 93097426 C A CCDC67 Missense_Mutation p.P133H 0.33 deleterious(0) probably_damaging(0.924) TCGA-18-4083-01 11 93806219 93806219 G T HEPHL1 Missense_Mutation p.D421Y 0.34 deleterious(0.02) benign(0.285) TCGA-18-4083-01 11 93913172 93913172 T A PANX1 Missense_Mutation p.V317D 0.22 deleterious(0.01) benign(0.031) TCGA-18-4083-01 12 10215708 10215708 A G CLEC9A Missense_Mutation p.Y125C 0.49 deleterious(0) probably_damaging(0.999) TCGA-18-4083-01 12 102315008 102315008 G T DRAM1 Missense_Mutation p.R229S 0.29 deleterious(0) benign(0.046) TCGA-18-4083-01 12 105601746 105601746 T C APPL2 Intron 0.20 TCGA-18-4083-01 12 117612096 117612096 C A FBXO21 Missense_Mutation p.A264S 0.10 tolerated(0.18) benign(0.159) TCGA-18-4083-01 12 121746253 121746253 C A ANAPC5 3'UTR 0.28 TCGA-18-4083-01 12 124350516 124350516 G T DNAH10 Missense_Mutation p.A2237S 0.28 probably_damaging(0.989) TCGA-18-4083-01 12 124354931 124354931 A T DNAH10 Missense_Mutation p.Y2395F 0.33 benign(0.044) TCGA-18-4083-01 12 126004172 126004172 G C TMEM132B Splice_Site p.X426_splice 0.30 TCGA-18-4083-01 12 129299353 129299353 G A SLC15A4 Missense_Mutation p.S270F 0.36 tolerated(0.19) benign(0.103) TCGA-18-4083-01 12 21471727 21471727 C A SLCO1A2 Missense_Mutation p.S64I 0.43 deleterious(0) probably_damaging(0.996) TCGA-18-4083-01 12 39967633 39967633 C A ABCD2 Missense_Mutation p.A630S 0.23 deleterious(0.02) possibly_damaging(0.83) TCGA-18-4083-01 12 43750293 43750293 T C ADAMTS20 Silent p.R1879R 0.47 TCGA-18-4083-01 12 43862455 43862455 C G ADAMTS20 Missense_Mutation p.E391Q 0.15 deleterious(0) probably_damaging(0.992) TCGA-18-4083-01 12 47172328 47172328 T C SLC38A4 Missense_Mutation p.S317G 0.26 tolerated(0.39) benign(0) TCGA-18-4083-01 12 48380866 48380866 G A COL2A1 Nonsense_Mutation p.Q454* 0.24 TCGA-18-4083-01 12 49415826 49415826 C G KMT2D Missense_Mutation p.E5507D 0.48 unknown(0) TCGA-18-4083-01 12 53189257 53189257 C G KRT3 Missense_Mutation p.Q190H 0.22 deleterious(0.02) benign(0.188) TCGA-18-4083-01 12 54059006 54059006 C T ATP5G2 3'UTR 0.14 TCGA-18-4083-01 12 56078923 56078923 G A ITGA7 Silent p.G1115G 0.52 TCGA-18-4083-01 12 56817237 56817237 G A TIMELESS Nonsense_Mutation p.R705* 0.31 TCGA-18-4083-01 12 63544455 63544455 C A AVPR1A Missense_Mutation p.E54D 0.34 deleterious(0) probably_damaging(0.998) TCGA-18-4083-01 12 66641937 66641937 T C IRAK3 Missense_Mutation p.Y593H 0.29 tolerated_low_confidence(0.49) benign(0.001) TCGA-18-4083-01 12 72057113 72057113 G A ZFC3H1 Missense_Mutation p.S93F 0.42 tolerated_low_confidence(0.05) possibly_damaging(0.485) TCGA-18-4083-01 12 75756926 75756926 G T GLIPR1L1 Missense_Mutation p.C189F 0.24 deleterious(0) probably_damaging(0.999) TCGA-18-4083-01 12 79689885 79689885 G A SYT1 Missense_Mutation p.A171T 0.24 deleterious(0.04) benign(0.089) TCGA-18-4083-01 12 81647445 81647445 A T ACSS3 Missense_Mutation p.Y664F 0.21 tolerated(0.26) benign(0.229) TCGA-18-4083-01 12 85270346 85270346 A G SLC6A15 Missense_Mutation p.I266T 0.21 tolerated(0.39) benign(0.007) TCGA-18-4083-01 12 9885654 9885654 C T CLECL1 Silent p.V69V 0.23 TCGA-18-4083-01 13 108518670 108518670 T A FAM155A Missense_Mutation p.Q92L 0.54 tolerated_low_confidence(0.13) benign(0.037) TCGA-18-4083-01 13 52035357 52035357 C A RPS4XP16 RNA 0.24 TCGA-18-4083-01 13 61987452 61987452 C T PCDH20 Silent p.V260V 0.25 TCGA-18-4083-01 13 77748533 77748533 C G MYCBP2 Missense_Mutation p.G1817A 0.29 probably_damaging(0.987) TCGA-18-4083-01 13 97928385 97928385 C G MBNL2 5'UTR 0.26 TCGA-18-4083-01 14 105409712 105409712 C A AHNAK2 Nonsense_Mutation p.E4026* 0.17 TCGA-18-4083-01 14 105414465 105414465 G A AHNAK2 Silent p.D2441D 0.06 TCGA-18-4083-01 14 19563388 19563388 A G POTEG Intron 0.15 TCGA-18-4083-01 14 19563672 19563672 C A POTEG Intron 0.12 TCGA-18-4083-01 14 20389002 20389002 T A OR4K5 Silent p.P79P 0.10 TCGA-18-4083-01 14 20585700 20585700 G T OR4K17 Missense_Mutation p.L45F 0.21 tolerated(0.27) benign(0.092) TCGA-18-4083-01 14 20692503 20692503 C A OR11H6 Missense_Mutation p.S212Y 0.28 tolerated(0.12) benign(0.014) TCGA-18-4083-01 14 21458712 21458712 C T METTL17 Nonsense_Mutation p.Q107* 0.20 TCGA-18-4083-01 14 23946781 23946781 G C NGDN Intron 0.27 TCGA-18-4083-01 14 31642569 31642569 C A HECTD1 Missense_Mutation p.V317L 0.37 deleterious(0.04) benign(0.155) TCGA-18-4083-01 14 42361074 42361074 C A LRFN5 Missense_Mutation p.N669K 0.51 tolerated_low_confidence(0.1) benign(0.417) TCGA-18-4083-01 14 47530548 47530548 T C MDGA2 Missense_Mutation p.K477E 0.46 tolerated(0.06) probably_damaging(0.94) TCGA-18-4083-01 14 62462802 62462802 C T SYT16 Missense_Mutation p.S22F 0.31 tolerated_low_confidence(0.06) benign(0.042) TCGA-18-4083-01 14 63447643 63447643 G A KCNH5 Silent p.L297L 0.30 TCGA-18-4083-01 14 74824650 74824650 G A VRTN Silent p.E388E 0.35 TCGA-18-4083-01 14 74874674 74874674 C A SYNDIG1L Nonsense_Mutation p.E146* 0.27 TCGA-18-4083-01 14 81964351 81964351 T C SEL1L Missense_Mutation p.Q338R 0.29 tolerated(0.08) probably_damaging(0.917) TCGA-18-4083-01 14 93814470 93814470 G T COX8C 3'UTR 0.47 TCGA-18-4083-01 14 95090224 95090224 C A SERPINA3 3'UTR 0.27 TCGA-18-4083-01 14 96997866 96997866 C T PAPOLA Silent p.L184L 0.10 TCGA-18-4083-01 15 25334028 25334028 G T SNORD116-20 RNA 0.21 TCGA-18-4083-01 15 25448236 25448236 G T SNORD115-20 5'Flank 0.55 TCGA-18-4083-01 15 34032192 34032192 A G RYR3 Missense_Mutation p.M2606V 0.22 benign(0) TCGA-18-4083-01 15 34354899 34354899 T C CHRM5 5'UTR 0.59 TCGA-18-4083-01 15 40633069 40633069 G A C15orf52 Silent p.L28L 0.27 TCGA-18-4083-01 15 42630685 42630685 G T GANC Nonsense_Mutation p.G614* 0.20 TCGA-18-4083-01 15 43533124 43533124 A G TGM5 Silent p.D309D 0.20 TCGA-18-4083-01 15 43893740 43893740 G A STRC Missense_Mutation p.P1519S 0.10 tolerated(0.05) benign(0.008) TCGA-18-4083-01 15 48796075 48796075 C T FBN1 Silent p.L674L 0.14 TCGA-18-4083-01 15 60745837 60745837 T C NARG2 Missense_Mutation p.M364V 0.18 deleterious(0) probably_damaging(0.977) TCGA-18-4083-01 15 65499191 65499191 C A CILP Missense_Mutation p.W118L 0.20 deleterious(0) possibly_damaging(0.761) TCGA-18-4083-01 15 65555558 65555558 G A PARP16 Missense_Mutation p.P207L 0.04 deleterious(0.01) benign(0.185) TCGA-18-4083-01 15 73545749 73545749 G T NEO1 Missense_Mutation p.A635S 0.59 tolerated(0.15) benign(0.314) TCGA-18-4083-01 15 76225297 76225297 G T FBXO22 Missense_Mutation p.G356C 0.17 deleterious(0) probably_damaging(1) TCGA-18-4083-01 15 78466135 78466138 TCAG - ACSBG1 Frame_Shift_Del p.T629Nfs*21 0.16 TCGA-18-4083-01 15 89398283 89398283 C A ACAN Missense_Mutation p.P823T 0.18 tolerated(0.43) possibly_damaging(0.641) TCGA-18-4083-01 15 90333708 90333708 C T ANPEP Missense_Mutation p.E912K 0.37 tolerated(0.11) benign(0.11) TCGA-18-4083-01 16 1453235 1453235 T C UNKL Missense_Mutation p.K133R 0.33 tolerated(0.06) benign(0.157) TCGA-18-4083-01 16 16108449 16108449 C T ABCC1 Silent p.A151A 0.25 TCGA-18-4083-01 16 20990716 20990716 T A DNAH3 Missense_Mutation p.E2671V 0.25 deleterious(0) probably_damaging(0.964) TCGA-18-4083-01 16 24902294 24902294 G T SLC5A11 Missense_Mutation p.A257S 0.22 tolerated(0.47) possibly_damaging(0.789) TCGA-18-4083-01 16 27751548 27751548 C T KIAA0556 Missense_Mutation p.H644Y 0.29 tolerated(1) benign(0.01) TCGA-18-4083-01 16 32077566 32077566 G C IGHV3OR16-9 Missense_Mutation p.A61P 0.45 tolerated_low_confidence(0.08) benign(0.168) TCGA-18-4083-01 16 3580633 3580633 C A CLUAP1 Silent p.R332R 0.11 TCGA-18-4083-01 16 51175787 51175787 G C SALL1 Missense_Mutation p.H116D 0.30 tolerated(0.62) benign(0.04) TCGA-18-4083-01 16 56535283 56535283 G A BBS2 Missense_Mutation p.R403C 0.22 tolerated(0.29) benign(0) TCGA-18-4083-01 16 56977077 56977077 C T HERPUD1 Missense_Mutation p.P351S 0.29 tolerated(0.56) benign(0.017) TCGA-18-4083-01 16 61687685 61687685 A G CDH8 Missense_Mutation p.S743P 0.29 deleterious(0) probably_damaging(0.995) TCGA-18-4083-01 16 830137 830137 G C MSLNL Silent p.T288T 0.24 TCGA-18-4083-01 16 84199402 84199402 G T DNAAF1 Missense_Mutation p.A293S 0.19 deleterious(0.04) probably_damaging(0.943) TCGA-18-4083-01 16 8953178 8953178 G C CARHSP1 Missense_Mutation p.S3C 0.23 deleterious_low_confidence(0) benign(0.08) TCGA-18-4083-01 16 8996248 8996248 C G USP7 Missense_Mutation p.G644A 0.46 tolerated(0.84) benign(0.001) TCGA-18-4083-01 17 17718184 17718184 C T SREBF1 Missense_Mutation p.S886N 0.76 tolerated(0.07) benign(0.029) TCGA-18-4083-01 17 31618927 31618927 C T ASIC2 Silent p.L69L 0.56 TCGA-18-4083-01 17 35300431 35300431 G T LHX1 3'UTR 0.23 TCGA-18-4083-01 17 39296278 39296278 G A KRTAP4-6 Silent p.C154C 0.07 TCGA-18-4083-01 17 42328845 42328845 C G SLC4A1 Missense_Mutation p.R808P 0.68 deleterious(0) probably_damaging(1) TCGA-18-4083-01 17 60814737 60814737 C T MARCH10 Intron 0.05 TCGA-18-4083-01 17 62493071 62493071 C A POLG2 Missense_Mutation p.A6S 0.16 deleterious_low_confidence(0.02) benign(0.001) TCGA-18-4083-01 17 64125873 64125873 C G CEP112 Missense_Mutation p.W211C 0.05 deleterious(0) probably_damaging(0.989) TCGA-18-4083-01 17 67190576 67190576 C G ABCA10 Missense_Mutation p.G432A 0.14 deleterious(0) probably_damaging(0.995) TCGA-18-4083-01 17 72368390 72368390 G T GPR142 Missense_Mutation p.G347V 0.75 tolerated(0.16) possibly_damaging(0.656) TCGA-18-4083-01 17 7578467 7578467 T G TP53 Missense_Mutation p.T155P 0.68 deleterious(0.01) possibly_damaging(0.888) TCGA-18-4083-01 17 8167621 8167621 A T PFAS Missense_Mutation p.E628V 0.19 deleterious(0) benign(0.418) TCGA-18-4083-01 18 14787095 14787095 C A ANKRD30B Missense_Mutation p.S577Y 0.54 tolerated(0.05) possibly_damaging(0.67) TCGA-18-4083-01 18 23895363 23895363 G C TAF4B Splice_Site p.X668_splice 0.42 TCGA-18-4083-01 18 334900 334900 A G COLEC12 Missense_Mutation p.V553A 0.17 tolerated(1) unknown(0) TCGA-18-4083-01 18 52571635 52571635 G T CCDC68 Missense_Mutation p.T321N 0.14 tolerated(0.35) benign(0.068) TCGA-18-4083-01 18 59174683 59174683 G A CDH20 Missense_Mutation p.E303K 0.58 tolerated(0.07) possibly_damaging(0.796) TCGA-18-4083-01 18 59854691 59854691 G T KIAA1468 5'UTR 0.16 TCGA-18-4083-01 18 67614263 67614263 G T CD226 Missense_Mutation p.A30D 0.26 deleterious(0.01) probably_damaging(0.993) TCGA-18-4083-01 18 72999994 72999994 G T TSHZ1 Nonsense_Mutation p.E833* 0.19 TCGA-18-4083-01 18 74091860 74091860 G A ZNF516 Missense_Mutation p.A737V 0.23 tolerated(0.27) benign(0.001) TCGA-18-4083-01 19 11533444 11533444 C G CCDC151 Missense_Mutation p.R401T 0.19 tolerated(0.14) benign(0.001) TCGA-18-4083-01 19 12060230 12060230 A T ZNF700 Missense_Mutation p.H464L 0.22 deleterious(0) probably_damaging(1) TCGA-18-4083-01 19 14143296 14143296 C T IL27RA Missense_Mutation p.H67Y 0.22 tolerated(0.35) benign(0.012) TCGA-18-4083-01 19 14677701 14677701 G T NDUFB7 Missense_Mutation p.L53I 0.20 tolerated(0.1) benign(0.304) TCGA-18-4083-01 19 1820047 1820047 C T REXO1 Missense_Mutation p.E846K 0.15 deleterious(0.02) possibly_damaging(0.906) TCGA-18-4083-01 19 18368565 18368565 G T KIAA1683 Silent p.R1177R 0.46 TCGA-18-4083-01 19 22156606 22156606 T G ZNF208 Silent p.S410S 0.22 TCGA-18-4083-01 19 2243439 2243439 G A SF3A2 Missense_Mutation p.G8R 0.23 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-18-4083-01 19 2737021 2737021 C A SLC39A3 Intron 0.58 TCGA-18-4083-01 19 33167120 33167120 G A ANKRD27 5'Flank 0.25 TCGA-18-4083-01 19 37129799 37129799 T A ZNF461 Missense_Mutation p.H483L 0.20 tolerated(0.1) probably_damaging(0.996) TCGA-18-4083-01 19 3783963 3783963 A G MATK Missense_Mutation p.F145S 0.26 deleterious(0) probably_damaging(1) TCGA-18-4083-01 19 37880312 37880312 G T ZNF527 Missense_Mutation p.R454L 0.18 tolerated(0.33) possibly_damaging(0.832) TCGA-18-4083-01 19 39384155 39384155 C G SIRT2 Missense_Mutation p.R42P 0.21 deleterious(0.01) probably_damaging(0.963) TCGA-18-4083-01 19 44536824 44536824 C T ZNF222 Nonsense_Mutation p.R373* 0.26 TCGA-18-4083-01 19 44947019 44947019 T A ZNF229 Missense_Mutation p.T5S 0.13 tolerated_low_confidence(0.17) benign(0.201) TCGA-18-4083-01 19 45579091 45579091 C G ZNF296 Missense_Mutation p.D110H 0.20 deleterious(0) possibly_damaging(0.525) TCGA-18-4083-01 19 47230799 47230799 G C STRN4 Silent p.V393V 0.18 TCGA-18-4083-01 19 50775187 50775187 A G MYH14 Missense_Mutation p.K1085E 0.14 deleterious(0.02) probably_damaging(0.979) TCGA-18-4083-01 19 51631751 51631751 G A SIGLEC9 Missense_Mutation p.R396K 0.29 tolerated(0.34) benign(0.058) TCGA-18-4083-01 19 51857975 51857975 T A ETFB 5'UTR 0.11 TCGA-18-4083-01 19 53269448 53269448 T C ZNF600 Missense_Mutation p.S521G 0.21 deleterious(0.01) possibly_damaging(0.68) TCGA-18-4083-01 19 53383958 53383958 C A ZNF320 Missense_Mutation p.C474F 0.41 deleterious(0.01) probably_damaging(0.912) TCGA-18-4083-01 19 54783874 54783874 T A LILRB2 Missense_Mutation p.S43C 0.45 deleterious(0) probably_damaging(0.938) TCGA-18-4083-01 19 54802503 54802503 G T LILRA3 Missense_Mutation p.P313H 0.38 deleterious(0.01) probably_damaging(0.957) TCGA-18-4083-01 19 55019216 55019216 G T LAIR2 Nonsense_Mutation p.E61* 0.23 TCGA-18-4083-01 19 55106657 55106657 T C LILRA1 Missense_Mutation p.F151L 0.47 tolerated(0.1) benign(0.409) TCGA-18-4083-01 19 58384096 58384096 A T ZNF814 3'UTR 0.17 TCGA-18-4083-01 19 58807023 58807023 G T ZNF8 3'UTR 0.25 TCGA-18-4083-01 19 8531119 8531119 C T HNRNPM Silent p.L211L 0.20 TCGA-18-4083-01 19 9065965 9065965 C T MUC16 Missense_Mutation p.E7161K 0.23 unknown(0) TCGA-18-4083-01 19 9089140 9089140 G C MUC16 Missense_Mutation p.S892C 0.37 unknown(0) TCGA-18-4083-01 1 109276137 109276138 - A FNDC7 Frame_Shift_Ins p.I711Nfs*17 0.27 TCGA-18-4083-01 1 110260013 110260013 T C GSTM5 Silent p.L208L 0.54 TCGA-18-4083-01 1 113245681 113245681 A C RHOC Missense_Mutation p.S73A 0.22 tolerated(0.08) probably_damaging(0.92) TCGA-18-4083-01 1 1139493 1139493 G - TNFRSF18 Intron 0.48 TCGA-18-4083-01 1 11708778 11708778 G A FBXO2 Silent p.T288T 0.39 TCGA-18-4083-01 1 12387911 12387911 C A VPS13D Missense_Mutation p.R2733S 0.28 benign(0.083) TCGA-18-4083-01 1 149755509 149755509 C A FCGR1A Intron 0.24 TCGA-18-4083-01 1 158617400 158617400 C T SPTA1 Silent p.Q1275Q 0.27 TCGA-18-4083-01 1 158687140 158687140 G C OR6K3 Missense_Mutation p.L256V 0.22 tolerated(0.75) benign(0.252) TCGA-18-4083-01 1 158724916 158724916 C T OR6K6 Missense_Mutation p.T104I 0.20 deleterious(0.03) benign(0.175) TCGA-18-4083-01 1 160517976 160517976 T A CD84 3'Flank 0.25 TCGA-18-4083-01 1 179609107 179609107 G C TDRD5 Missense_Mutation p.E552Q 0.45 deleterious(0.01) benign(0.071) TCGA-18-4083-01 1 183525256 183525256 G C NCF2 Silent p.V526V 0.21 TCGA-18-4083-01 1 196757463 196757463 A G CFHR3 Missense_Mutation p.D183G 0.22 tolerated(0.42) possibly_damaging(0.843) TCGA-18-4083-01 1 197886948 197886948 G T LHX9 5'UTR 0.23 TCGA-18-4083-01 1 20517954 20517954 G T UBXN10 3'UTR 0.40 TCGA-18-4083-01 1 207646142 207646142 T A CR2 Silent p.V532V 0.44 TCGA-18-4083-01 1 213446008 213446008 G T RPS6KC1 3'UTR 0.29 TCGA-18-4083-01 1 216373338 216373338 G T USH2A Missense_Mutation p.P1148T 0.37 probably_damaging(0.982) TCGA-18-4083-01 1 217793767 217793767 C T GPATCH2 Missense_Mutation p.R44Q 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-18-4083-01 1 223177328 223177328 G T DISP1 Missense_Mutation p.Q863H 0.38 deleterious(0.04) probably_damaging(0.94) TCGA-18-4083-01 1 230883170 230883170 G T CAPN9 5'UTR 0.42 TCGA-18-4083-01 1 236189372 236189372 C T NID1 Missense_Mutation p.R603H 0.37 tolerated(0.46) benign(0.005) TCGA-18-4083-01 1 236702206 236702210 CAGCA GAGTG LGALS8 Missense_Mutation p.SSM54RSV 0.13 TCGA-18-4083-01 1 237947185 237947185 A T RYR2 Missense_Mutation p.Y4058F 0.39 benign(0.084) TCGA-18-4083-01 1 237947838 237947838 G T RYR2 Missense_Mutation p.V4276L 0.37 benign(0.001) TCGA-18-4083-01 1 240370901 240370901 G T FMN2 Missense_Mutation p.G930V 0.39 unknown(0) TCGA-18-4083-01 1 241146429 241146429 C A RGS7 Missense_Mutation p.G59V 0.46 deleterious(0) possibly_damaging(0.836) TCGA-18-4083-01 1 241146430 241146430 C T RGS7 Splice_Site p.X59_splice 0.48 TCGA-18-4083-01 1 241663881 241663881 C G FH Missense_Mutation p.V416L 0.38 tolerated(0.72) benign(0.008) TCGA-18-4083-01 1 241798599 241798599 T G CHML Missense_Mutation p.H157P 0.16 tolerated(0.38) benign(0.001) TCGA-18-4083-01 1 242045216 242045216 A G EXO1 Splice_Site p.X704_splice 0.42 TCGA-18-4083-01 1 247599422 247599422 G C NLRP3 Missense_Mutation p.Q883H 0.40 tolerated(0.12) benign(0.009) TCGA-18-4083-01 1 248366559 248366559 A T OR2M3 Missense_Mutation p.S64C 0.44 deleterious(0) benign(0.172) TCGA-18-4083-01 1 248525095 248525095 G T OR2T4 Missense_Mutation p.L71F 0.37 tolerated(0.11) benign(0.109) TCGA-18-4083-01 1 248569700 248569700 C A OR2T1 Nonsense_Mutation p.Y135* 0.36 TCGA-18-4083-01 1 248616203 248616203 C G OR2T2 Missense_Mutation p.I35M 0.19 tolerated(0.12) probably_damaging(0.994) TCGA-18-4083-01 1 28920709 28920709 A C RAB42 3'UTR 0.32 TCGA-18-4083-01 1 2938556 2938556 C A ACTRT2 Silent p.P102P 0.26 TCGA-18-4083-01 1 32156152 32156152 T A COL16A1 Missense_Mutation p.K487M 0.06 unknown(0) TCGA-18-4083-01 1 34076665 34076665 G T CSMD2 Missense_Mutation p.P2067T 0.26 deleterious(0.03) probably_damaging(0.989) TCGA-18-4083-01 1 47110897 47110897 T A ATPAF1 Missense_Mutation p.Y230F 0.23 tolerated(0.11) possibly_damaging(0.755) TCGA-18-4083-01 1 52729506 52729506 C G ZFYVE9 Missense_Mutation p.A747G 0.44 tolerated(0.07) probably_damaging(0.999) TCGA-18-4083-01 1 53282232 53282232 G T ZYG11B Missense_Mutation p.G659C 0.48 deleterious(0.02) possibly_damaging(0.545) TCGA-18-4083-01 1 59133586 59133586 T A MYSM1 Missense_Mutation p.H592L 0.26 deleterious(0) probably_damaging(1) TCGA-18-4083-01 1 66062217 66062217 C T LEPR Missense_Mutation p.P264S 0.46 tolerated(0.07) benign(0.217) TCGA-18-4083-01 1 74835185 74835185 G T FPGT-TNNI3K Missense_Mutation p.C642F 0.46 deleterious(0) probably_damaging(0.998) TCGA-18-4083-01 1 74836041 74836041 C G FPGT-TNNI3K Missense_Mutation p.N693K 0.43 deleterious(0.04) benign(0.234) TCGA-18-4083-01 1 74929212 74929212 G T TNNI3K Missense_Mutation p.R801L 0.29 deleterious(0.04) probably_damaging(0.996) TCGA-18-4083-01 1 75626607 75626607 A T LHX8 3'UTR 0.16 TCGA-18-4083-01 1 75626609 75626609 G T LHX8 3'UTR 0.14 TCGA-18-4083-01 1 75626610 75626610 G T LHX8 3'UTR 0.15 TCGA-18-4083-01 1 76255848 76255848 C A RABGGTB Intron 0.09 TCGA-18-4083-01 1 7724016 7724016 T A CAMTA1 Missense_Mutation p.L470H 0.27 deleterious(0) probably_damaging(0.999) TCGA-18-4083-01 1 78207376 78207376 C T USP33 Missense_Mutation p.A34T 0.19 tolerated(0.69) benign(0.001) TCGA-18-4083-01 1 89418830 89418830 G C CCBL2 Silent p.G290G 0.63 TCGA-18-4083-01 1 91182202 91182202 G T BARHL2 Missense_Mutation p.P184Q 0.21 deleterious(0.04) unknown(0) TCGA-18-4083-01 20 13280083 13280083 T C ISM1 Missense_Mutation p.F458L 0.49 tolerated(1) benign(0.01) TCGA-18-4083-01 20 13747527 13747527 C T ESF1 Missense_Mutation p.M521I 0.18 tolerated(0.23) benign(0.004) TCGA-18-4083-01 20 25426751 25426751 A C GINS1 3'UTR 0.21 TCGA-18-4083-01 20 25439107 25439107 C T NINL Missense_Mutation p.R1252Q 0.21 tolerated(1) benign(0) TCGA-18-4083-01 20 30409369 30409369 G C MYLK2 Missense_Mutation p.A201P 0.23 tolerated(0.05) benign(0.265) TCGA-18-4083-01 20 30409370 30409370 C T MYLK2 Missense_Mutation p.A201V 0.22 deleterious(0.04) benign(0.179) TCGA-18-4083-01 20 31984835 31984835 C A CDK5RAP1 Missense_Mutation p.R12S 0.54 tolerated_low_confidence(0.06) benign(0.075) TCGA-18-4083-01 20 32302479 32302479 C A PXMP4 Splice_Site p.X59_splice 0.24 TCGA-18-4083-01 20 32302480 32302480 C A PXMP4 Missense_Mutation p.S59I 0.24 deleterious(0) probably_damaging(0.972) TCGA-18-4083-01 20 41385101 41385101 C A PTPRT Splice_Site p.X287_splice 0.15 TCGA-18-4083-01 20 41385102 41385102 C A PTPRT Nonsense_Mutation p.E287* 0.15 TCGA-18-4083-01 20 43383110 43383110 C A RIMS4 3'Flank 0.17 TCGA-18-4083-01 20 44439917 44439917 C T DNTTIP1 3'UTR 0.23 TCGA-18-4083-01 20 52645090 52645090 G A BCAS1 Silent p.P188P 0.39 TCGA-18-4083-01 20 58645017 58645017 C T C20orf197 5'UTR 0.42 TCGA-18-4083-01 20 5903529 5903529 G T CHGB Nonsense_Mutation p.E247* 0.24 TCGA-18-4083-01 20 62724080 62724080 C A OPRL1 Missense_Mutation p.P3T 0.58 tolerated_low_confidence(0.38) benign(0.001) TCGA-18-4083-01 20 746113 746113 G A SLC52A3 Silent p.G102G 0.16 TCGA-18-4083-01 21 11049605 11049605 G A BAGE2 RNA 0.03 TCGA-18-4083-01 21 28327120 28327120 C A ADAMTS5 Missense_Mutation p.R392L 0.29 deleterious(0) probably_damaging(0.998) TCGA-18-4083-01 21 34931601 34931601 G A SON Silent p.S2129S 0.34 TCGA-18-4083-01 21 41496199 41496199 C A DSCAM Missense_Mutation p.V1207L 0.10 tolerated(0.07) possibly_damaging(0.791) TCGA-18-4083-01 21 45959357 45959357 C A KRTAP10-1 Missense_Mutation p.C226F 0.04 deleterious(0) unknown(0) TCGA-18-4083-01 21 46021444 46021444 G T KRTAP10-7 Missense_Mutation p.C308F 0.71 deleterious(0) unknown(0) TCGA-18-4083-01 21 47971581 47971581 G T DIP2A Silent p.L958L 0.33 TCGA-18-4083-01 22 17072642 17072642 G C CCT8L2 Missense_Mutation p.L267V 0.36 deleterious(0) possibly_damaging(0.766) TCGA-18-4083-01 22 17579730 17579730 T A IL17RA Missense_Mutation p.C126S 0.24 deleterious(0) probably_damaging(0.999) TCGA-18-4083-01 22 22730834 22730834 A G IGLV5-45 Missense_Mutation p.E110G 0.28 deleterious(0.01) possibly_damaging(0.478) TCGA-18-4083-01 22 22782255 22782255 A C IGLV5-37 Missense_Mutation p.S85R 0.34 tolerated(0.08) benign(0.097) TCGA-18-4083-01 22 49103557 49103557 T A FAM19A5 Nonsense_Mutation p.C97* 0.32 TCGA-18-4083-01 2 112858218 112858218 A G TMEM87B Missense_Mutation p.I466V 0.24 tolerated(0.63) possibly_damaging(0.688) TCGA-18-4083-01 2 113943638 113943638 C A PSD4 Silent p.G478G 0.46 TCGA-18-4083-01 2 116548755 116548755 G T DPP10 Nonsense_Mutation p.E548* 0.22 TCGA-18-4083-01 2 118588382 118588382 C G DDX18 3'UTR 0.49 TCGA-18-4083-01 2 131130789 131130789 C T PTPN18 Missense_Mutation p.R459W 0.30 deleterious(0) possibly_damaging(0.874) TCGA-18-4083-01 2 140990892 140990892 T C LRP1B Missense_Mutation p.T4555A 0.24 benign(0.217) TCGA-18-4083-01 2 141202129 141202129 T A LRP1B Intron 0.40 TCGA-18-4083-01 2 155711826 155711826 C G KCNJ3 3'UTR 0.50 TCGA-18-4083-01 2 162820642 162820642 T C SLC4A10 Intron 0.27 TCGA-18-4083-01 2 163693071 163693071 C T KCNH7 Missense_Mutation p.E95K 0.22 deleterious(0) probably_damaging(0.978) TCGA-18-4083-01 2 166773802 166773802 C G TTC21B Missense_Mutation p.E622Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-18-4083-01 2 168100236 168100236 G T XIRP2 Silent p.P778P 0.67 TCGA-18-4083-01 2 179479127 179479127 A T TTN Intron 0.20 TCGA-18-4083-01 2 189873762 189873762 C G COL3A1 Missense_Mutation p.A1213G 0.77 unknown(0) TCGA-18-4083-01 2 190340027 190340027 C G WDR75 Missense_Mutation p.Q793E 0.83 tolerated(0.41) benign(0.005) TCGA-18-4083-01 2 206058041 206058041 C T PARD3B Missense_Mutation p.L651F 0.07 deleterious(0) probably_damaging(0.992) TCGA-18-4083-01 2 219540970 219540970 G A STK36 Missense_Mutation p.R218H 0.67 deleterious(0) benign(0.022) TCGA-18-4083-01 2 225266379 225266379 C A FAM124B Missense_Mutation p.C36F 0.46 tolerated(0.09) benign(0.093) TCGA-18-4083-01 2 234407258 234407258 C A USP40 Missense_Mutation p.G895V 0.57 deleterious(0) probably_damaging(0.982) TCGA-18-4083-01 2 239009040 239009040 A G ESPNL 5'UTR 0.67 TCGA-18-4083-01 2 27706745 27706745 T A IFT172 Missense_Mutation p.E132D 0.44 tolerated(1) benign(0.005) TCGA-18-4083-01 2 61463468 61463468 T C USP34 Silent p.T2278T 0.26 TCGA-18-4083-01 2 70742029 70742029 G A TGFA Missense_Mutation p.A19V 0.21 tolerated_low_confidence(1) benign(0.001) TCGA-18-4083-01 2 73302609 73302609 T C RAB11FIP5 3'UTR 0.48 TCGA-18-4083-01 2 73677452 73677452 A T ALMS1 Silent p.S1265S 0.29 TCGA-18-4083-01 2 76975793 76975793 G T LRRTM4 3'UTR 0.31 TCGA-18-4083-01 2 79255449 79255449 G T REG3G 3'UTR 0.51 TCGA-18-4083-01 2 79314031 79314031 A T REG1B Silent p.P30P 0.17 TCGA-18-4083-01 2 79314032 79314032 G T REG1B Missense_Mutation p.P30H 0.17 deleterious(0.04) possibly_damaging(0.648) TCGA-18-4083-01 2 79314033 79314033 G A REG1B Missense_Mutation p.P30S 0.18 tolerated(0.11) benign(0.203) TCGA-18-4083-01 2 85536606 85536606 G T TCF7L1 3'UTR 0.25 TCGA-18-4083-01 2 86831828 86831828 G T RNF103 Missense_Mutation p.T399K 0.21 deleterious(0) possibly_damaging(0.798) TCGA-18-4083-01 2 89111211 89111211 T C MIR4436A 5'Flank 0.49 TCGA-18-4083-01 2 89521912 89521912 T C IGKV2-28 Translation_Start_Site p.M1? 0.17 deleterious(0.05) benign(0.118) TCGA-18-4083-01 2 90139450 90139450 C G IGKV1D-16 Missense_Mutation p.S74C 0.22 deleterious(0) possibly_damaging(0.83) TCGA-18-4083-01 2 90193270 90193270 C A IGKV1D-13 Missense_Mutation p.P66H 0.17 deleterious(0) probably_damaging(0.979) TCGA-18-4083-01 3 108568055 108568055 C G TRAT1 Missense_Mutation p.P86R 0.22 deleterious(0) probably_damaging(1) TCGA-18-4083-01 3 111797663 111797663 G T TMPRSS7 Missense_Mutation p.G641W 0.28 deleterious(0) probably_damaging(0.957) TCGA-18-4083-01 3 111927157 111927157 G A SLC9C1 Silent p.Y618Y 0.21 TCGA-18-4083-01 3 119348282 119348282 T A PLA1A Silent p.T446T 0.57 TCGA-18-4083-01 3 121554077 121554077 A T EAF2 5'UTR 0.22 TCGA-18-4083-01 3 129290355 129290355 G A PLXND1 Silent p.P1111P 0.40 TCGA-18-4083-01 3 134197450 134197450 A - ANAPC13 Frame_Shift_Del p.I72Lfs*48 0.21 TCGA-18-4083-01 3 134256052 134256052 A T CEP63 Missense_Mutation p.Q166L 0.17 deleterious(0) probably_damaging(0.986) TCGA-18-4083-01 3 141497223 141497223 C A GRK7 Silent p.R33R 0.27 TCGA-18-4083-01 3 146234826 146234826 C G PLSCR1 Missense_Mutation p.M289I 0.53 tolerated(0.33) benign(0.017) TCGA-18-4083-01 3 148752709 148752709 G A HLTF Missense_Mutation p.T958I 0.13 tolerated(0.1) probably_damaging(0.999) TCGA-18-4083-01 3 151112454 151112454 A G MED12L Silent p.R1838R 0.48 TCGA-18-4083-01 3 164712050 164712050 C A SI Missense_Mutation p.L1612F 0.40 tolerated(0.22) possibly_damaging(0.523) TCGA-18-4083-01 3 164907547 164907547 G A SLITRK3 Missense_Mutation p.P358S 0.13 tolerated(0.59) benign(0.434) TCGA-18-4083-01 3 167246922 167246922 G C WDR49 Missense_Mutation p.S423W 0.15 deleterious(0) possibly_damaging(0.756) TCGA-18-4083-01 3 173998905 173998905 T A NLGN1 Missense_Mutation p.Y762N 0.10 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-18-4083-01 3 180320911 180320911 G T TTC14 Splice_Site p.X96_splice 0.09 TCGA-18-4083-01 3 183273393 183273393 C A KLHL6 Nonsense_Mutation p.E17* 0.09 TCGA-18-4083-01 3 183882370 183882370 G T DVL3 Silent p.R148R 0.08 TCGA-18-4083-01 3 184039232 184039232 G A EIF4G1 Missense_Mutation p.G294E 0.23 tolerated(0.78) probably_damaging(0.998) TCGA-18-4083-01 3 184075171 184075171 C T CLCN2 Missense_Mutation p.A293T 0.22 deleterious(0.03) possibly_damaging(0.58) TCGA-18-4083-01 3 186954301 186954301 C - MASP1 Frame_Shift_Del p.G453Afs*14 0.16 TCGA-18-4083-01 3 190936711 190936711 G C OSTN Missense_Mutation p.R93T 0.12 deleterious(0) probably_damaging(0.999) TCGA-18-4083-01 3 194362606 194362606 C G LSG1 3'UTR 0.55 TCGA-18-4083-01 3 195594363 195594363 C A TNK2 Missense_Mutation p.A999S 0.13 tolerated_low_confidence(0.15) possibly_damaging(0.719) TCGA-18-4083-01 3 197687250 197687250 C G LMLN Missense_Mutation p.S53C 0.09 tolerated_low_confidence(0.06) possibly_damaging(0.73) TCGA-18-4083-01 3 45800430 45800430 T C SLC6A20 3'UTR 0.69 TCGA-18-4083-01 3 52842629 52842629 G A ITIH3 Missense_Mutation p.V869I 0.29 tolerated(0.57) benign(0.032) TCGA-18-4083-01 3 69101202 69101202 G A TMF1 Silent p.F12F 0.24 TCGA-18-4083-01 4 115891646 115891646 G T NDST4 Missense_Mutation p.H387Q 0.27 deleterious(0) possibly_damaging(0.531) TCGA-18-4083-01 4 121966948 121966948 G A NDNF Silent p.L15L 0.26 TCGA-18-4083-01 4 148559801 148559801 G C PRMT10 Missense_Mutation p.S807C 0.34 deleterious(0) probably_damaging(0.993) TCGA-18-4083-01 4 153247289 153247289 G C FBXW7 Missense_Mutation p.R505G 0.33 deleterious(0) probably_damaging(1) TCGA-18-4083-01 4 155219786 155219786 C A DCHS2 Nonsense_Mutation p.E1439* 0.33 TCGA-18-4083-01 4 155312370 155312370 T C DCHS2 Missense_Mutation p.D27G 0.23 tolerated_low_confidence(0.13) benign(0.009) TCGA-18-4083-01 4 16597384 16597384 G T LDB2 Missense_Mutation p.T117K 0.44 deleterious(0.02) possibly_damaging(0.903) TCGA-18-4083-01 4 174292541 174292541 C A SAP30 Silent p.R70R 0.29 TCGA-18-4083-01 4 178355561 178355561 C T AGA Missense_Mutation p.D261N 0.32 deleterious(0) probably_damaging(0.999) TCGA-18-4083-01 4 178911687 178911687 G A LINC01098 3'UTR 0.36 TCGA-18-4083-01 4 184241443 184241443 G A CLDN22 5'UTR 0.23 TCGA-18-4083-01 4 187539606 187539606 C G FAT1 Missense_Mutation p.V2712L 0.27 benign(0.029) TCGA-18-4083-01 4 187539651 187539651 C A FAT1 Nonsense_Mutation p.E2697* 0.27 TCGA-18-4083-01 4 189026442 189026442 C T TRIML2 5'UTR 0.34 TCGA-18-4083-01 4 2074721 2074721 C G POLN Missense_Mutation p.V831L 0.21 tolerated(0.22) benign(0.056) TCGA-18-4083-01 4 31144317 31144317 T A PCDH7 Missense_Mutation p.L1205Q 0.29 deleterious(0.01) benign(0.272) TCGA-18-4083-01 4 38022223 38022223 C T TBC1D1 Silent p.H328H 0.32 TCGA-18-4083-01 4 46043132 46043132 G T GABRG1 Missense_Mutation p.T424K 0.34 tolerated(0.21) benign(0.084) TCGA-18-4083-01 4 48572902 48572902 G A FRYL Nonsense_Mutation p.R980* 0.22 TCGA-18-4083-01 4 5841259 5841259 G T CRMP1 Missense_Mutation p.L434I 0.24 deleterious(0) possibly_damaging(0.878) TCGA-18-4083-01 4 69795618 69795618 C G UGT2A3 Silent p.V499V 0.25 TCGA-18-4083-01 4 73184414 73184414 C A ADAMTS3 Missense_Mutation p.D454Y 0.29 deleterious(0.04) possibly_damaging(0.665) TCGA-18-4083-01 4 74316386 74316386 G A AFP Missense_Mutation p.M448I 0.32 tolerated(1) benign(0.003) TCGA-18-4083-01 4 74964371 74964371 A G CXCL2 Silent p.C85C 0.33 TCGA-18-4083-01 4 89618247 89618247 A T NAP1L5 3'UTR 0.45 TCGA-18-4083-01 4 94031943 94031943 G A GRID2 Missense_Mutation p.G192R 0.36 deleterious(0.01) probably_damaging(0.981) TCGA-18-4083-01 4 94159546 94159546 G A GRID2 Missense_Mutation p.E384K 0.36 tolerated(0.93) benign(0.014) TCGA-18-4083-01 5 110439942 110439942 A G WDR36 Missense_Mutation p.K322R 0.65 tolerated(0.98) benign(0.008) TCGA-18-4083-01 5 11199587 11199587 C T CTNND2 Missense_Mutation p.D650N 0.55 deleterious(0.02) probably_damaging(0.977) TCGA-18-4083-01 5 127681067 127681067 C G FBN2 Missense_Mutation p.G1067R 0.57 deleterious(0) benign(0.02) TCGA-18-4083-01 5 128864307 128864307 T A ADAMTS19 Nonsense_Mutation p.L416* 0.37 TCGA-18-4083-01 5 133541529 133541529 T G PPP2CA Intron 0.52 TCGA-18-4083-01 5 137522040 137522040 G C KIF20A Missense_Mutation p.E759Q 0.59 deleterious(0.01) probably_damaging(0.947) TCGA-18-4083-01 5 140481562 140481562 C A PCDHB3 Missense_Mutation p.D443E 0.57 deleterious_low_confidence(0) possibly_damaging(0.76) TCGA-18-4083-01 5 140774623 140774623 C G PCDHGA8 Missense_Mutation p.A748G 0.68 deleterious_low_confidence(0) possibly_damaging(0.884) TCGA-18-4083-01 5 141033816 141033816 C A ARAP3 Missense_Mutation p.D1446Y 0.64 deleterious_low_confidence(0) possibly_damaging(0.798) TCGA-18-4083-01 5 14374354 14374354 G A TRIO Missense_Mutation p.R1078Q 0.25 probably_damaging(0.984) TCGA-18-4083-01 5 147491427 147491427 G T SPINK5 Missense_Mutation p.G597C 0.73 deleterious(0) probably_damaging(0.999) TCGA-18-4083-01 5 148709278 148709278 G C AFAP1L1 Silent p.R620R 0.20 TCGA-18-4083-01 5 160071204 160071204 A T ATP10B Missense_Mutation p.L270Q 0.62 deleterious(0) probably_damaging(1) TCGA-18-4083-01 5 161324136 161324136 C G GABRA1 Missense_Mutation p.P360R 0.63 tolerated(0.23) possibly_damaging(0.487) TCGA-18-4083-01 5 169423111 169423111 C T DOCK2 Silent p.N1005N 0.29 TCGA-18-4083-01 5 175110705 175110705 G T HRH2 Missense_Mutation p.G157W 0.29 deleterious(0) probably_damaging(0.999) TCGA-18-4083-01 5 176709469 176709469 G T NSD1 Nonsense_Mutation p.E1966* 0.06 TCGA-18-4083-01 5 23527437 23527437 C A PRDM9 Missense_Mutation p.P747H 0.48 deleterious(0.01) probably_damaging(0.992) TCGA-18-4083-01 5 23527438 23527438 C A PRDM9 Silent p.P747P 0.48 TCGA-18-4083-01 5 26915941 26915941 G A CDH9 Missense_Mutation p.T107I 0.24 deleterious(0) probably_damaging(0.997) TCGA-18-4083-01 5 40681955 40681955 C T PTGER4 Missense_Mutation p.P287L 0.09 deleterious(0) probably_damaging(0.994) TCGA-18-4083-01 5 43161782 43161782 G A ZNF131 Intron 0.28 TCGA-18-4083-01 5 45262634 45262634 G T HCN1 Missense_Mutation p.P688T 0.14 tolerated_low_confidence(0.06) benign(0.037) TCGA-18-4083-01 5 45462029 45462029 G A HCN1 Silent p.H310H 0.52 TCGA-18-4083-01 5 5182325 5182325 A T ADAMTS16 Missense_Mutation p.R224W 0.19 deleterious(0.03) benign(0.009) TCGA-18-4083-01 5 5462506 5462506 G A KIAA0947 Missense_Mutation p.S1020N 0.14 tolerated(0.07) benign(0.058) TCGA-18-4083-01 5 74893773 74893773 C A POLK Missense_Mutation p.T848K 0.55 tolerated(0.11) benign(0.041) TCGA-18-4083-01 5 80169001 80169001 G A MSH3 Missense_Mutation p.R1066K 0.67 tolerated(0.11) possibly_damaging(0.893) TCGA-18-4083-01 5 89979655 89979655 G T GPR98 Missense_Mutation p.D1973Y 0.68 probably_damaging(0.998) TCGA-18-4083-01 6 102074484 102074484 C A GRIK2 Silent p.T171T 0.23 TCGA-18-4083-01 6 111694235 111694235 A G REV3L Missense_Mutation p.S1775P 0.35 tolerated_low_confidence(0.21) benign(0.265) TCGA-18-4083-01 6 11768579 11768579 T C ADTRP Missense_Mutation p.D82G 0.32 tolerated(0.29) possibly_damaging(0.562) TCGA-18-4083-01 6 122768341 122768341 C A SERINC1 Missense_Mutation p.G307V 0.63 tolerated(0.07) benign(0.008) TCGA-18-4083-01 6 136596770 136596770 T G BCLAF1 Missense_Mutation p.E584D 0.10 tolerated(0.1) benign(0.388) TCGA-18-4083-01 6 152652799 152652799 T A SYNE1 Missense_Mutation p.T4341S 0.65 benign(0.026) TCGA-18-4083-01 6 152730772 152730772 G A SYNE1 Silent p.V2101V 0.30 TCGA-18-4083-01 6 29054114 29054114 C A OR2B3 Silent p.L304L 0.49 TCGA-18-4083-01 6 30954401 30954401 C A MUC21 Missense_Mutation p.A150D 0.31 deleterious(0.02) unknown(0) TCGA-18-4083-01 6 36652195 36652195 C T CDKN1A Missense_Mutation p.A106V 0.36 tolerated(0.11) benign(0.402) TCGA-18-4083-01 6 43189039 43189039 G A CUL9 Silent p.E2244E 0.29 TCGA-18-4083-01 6 46832859 46832859 G C GPR116 Missense_Mutation p.T637S 0.69 tolerated(0.3) benign(0.001) TCGA-18-4083-01 6 70490434 70490434 C A LMBRD1 Missense_Mutation p.A87S 0.59 tolerated(0.7) benign(0.002) TCGA-18-4083-01 6 7572250 7572250 A T DSP Silent p.L693L 0.28 TCGA-18-4083-01 7 106786829 106786829 G T PRKAR2B Missense_Mutation p.G222C 0.79 deleterious(0) probably_damaging(1) TCGA-18-4083-01 7 108213723 108213723 A G DNAJB9 Missense_Mutation p.S200G 0.78 tolerated(0.47) benign(0.004) TCGA-18-4083-01 7 121942061 121942061 C T FEZF1 Missense_Mutation p.G473D 0.73 deleterious_low_confidence(0) unknown(0) TCGA-18-4083-01 7 122774573 122774573 C T SLC13A1 Missense_Mutation p.D275N 0.76 tolerated(0.94) possibly_damaging(0.677) TCGA-18-4083-01 7 128412600 128412600 G C OPN1SW Silent p.P347P 0.79 TCGA-18-4083-01 7 134222968 134222968 A C AKR1B10 Missense_Mutation p.Q255P 0.74 deleterious(0) probably_damaging(0.964) TCGA-18-4083-01 7 139168033 139168033 C A KLRG2 Missense_Mutation p.W119L 0.94 deleterious(0.04) probably_damaging(0.994) TCGA-18-4083-01 7 14622694 14622694 C A DGKB Missense_Mutation p.W502L 0.55 deleterious(0) probably_damaging(0.982) TCGA-18-4083-01 7 150095047 150095047 G T ZNF775 Missense_Mutation p.R493L 0.29 tolerated(0.1) benign(0.41) TCGA-18-4083-01 7 19184710 19184710 G T FERD3L Silent p.P92P 0.23 TCGA-18-4083-01 7 21751419 21751419 G T DNAH11 Silent p.P2315P 0.11 TCGA-18-4083-01 7 2617966 2617966 G A IQCE Missense_Mutation p.E186K 0.63 deleterious(0) possibly_damaging(0.802) TCGA-18-4083-01 7 27224431 27224431 C T HOXA11 Silent p.S111S 0.63 TCGA-18-4083-01 7 30492391 30492391 C T NOD1 Silent p.R214R 0.19 TCGA-18-4083-01 7 30931797 30931797 G C FAM188B 3'UTR 0.26 TCGA-18-4083-01 7 31792918 31792918 G - PDE1C 3'UTR 0.27 TCGA-18-4083-01 7 35289771 35289771 G T TBX20 Missense_Mutation p.L58M 0.53 tolerated(0.11) benign(0.111) TCGA-18-4083-01 7 53103841 53103841 C T POM121L12 Silent p.R159R 0.62 TCGA-18-4083-01 7 57522284 57522284 T C ZNF716 Missense_Mutation p.V53A 0.13 tolerated(0.1) possibly_damaging(0.513) TCGA-18-4083-01 7 83014679 83014679 A T SEMA3E Nonsense_Mutation p.C602* 0.81 TCGA-18-4083-01 7 87183214 87183214 C A ABCB1 Missense_Mutation p.G288W 0.71 deleterious(0) probably_damaging(1) TCGA-18-4083-01 7 87459417 87459417 C A RUNDC3B 3'UTR 0.71 TCGA-18-4083-01 7 87537407 87537407 G C DBF4 Missense_Mutation p.E652Q 0.81 tolerated(0.18) possibly_damaging(0.848) TCGA-18-4083-01 8 102381869 102381869 C A NACAP1 RNA 0.50 TCGA-18-4083-01 8 113259299 113259299 C A CSMD3 Missense_Mutation p.R3391L 0.42 deleterious(0.02) possibly_damaging(0.905) TCGA-18-4083-01 8 113484893 113484893 T G CSMD3 Silent p.L1774L 0.27 TCGA-18-4083-01 8 114389026 114389026 C A CSMD3 Intron 0.38 TCGA-18-4083-01 8 140631126 140631126 C G KCNK9 Missense_Mutation p.C167S 0.38 tolerated(0.25) benign(0.223) TCGA-18-4083-01 8 145019424 145019424 C T PLEC Intron 0.29 TCGA-18-4083-01 8 21769789 21769789 G T DOK2 Missense_Mutation p.A99E 0.38 tolerated(0.53) benign(0.038) TCGA-18-4083-01 8 24304711 24304711 G A ADAM7 Missense_Mutation p.E57K 0.27 tolerated(0.28) possibly_damaging(0.742) TCGA-18-4083-01 8 2964070 2964070 C T CSMD1 Missense_Mutation p.G2310D 0.24 benign(0.025) TCGA-18-4083-01 8 35631845 35631845 C T UNC5D Missense_Mutation p.A836V 0.15 tolerated(0.29) benign(0.079) TCGA-18-4083-01 8 38940183 38940183 A T ADAM9 Silent p.V635V 0.13 TCGA-18-4083-01 8 55371731 55371731 C A SOX17 Silent p.R141R 0.25 TCGA-18-4083-01 8 55542773 55542773 G A RP1 Missense_Mutation p.V2111I 0.47 tolerated(0.11) benign(0.042) TCGA-18-4083-01 8 62465639 62465639 C G ASPH Missense_Mutation p.R526T 0.03 deleterious(0) probably_damaging(0.968) TCGA-18-4083-01 8 67369056 67369056 G A ADHFE1 Missense_Mutation p.G331R 0.17 deleterious(0.02) probably_damaging(0.928) TCGA-18-4083-01 8 6783600 6783600 G T DEFA6 5'Flank 0.42 TCGA-18-4083-01 8 86118434 86118434 G A E2F5 Missense_Mutation p.D177N 0.14 deleterious(0.01) possibly_damaging(0.5) TCGA-18-4083-01 8 87679296 87679296 G T CNGB3 Missense_Mutation p.P237T 0.48 tolerated(0.07) possibly_damaging(0.677) TCGA-18-4083-01 8 88885771 88885771 C A DCAF4L2 Silent p.L143L 0.24 TCGA-18-4083-01 9 109689704 109689704 G - ZNF462 Frame_Shift_Del p.A1171Pfs*6 0.21 TCGA-18-4083-01 9 115760384 115760384 C T ZNF883 RNA 0.28 TCGA-18-4083-01 9 117808740 117808740 C A TNC Nonsense_Mutation p.G1692* 0.24 TCGA-18-4083-01 9 131117388 131117388 G T SLC27A4 Missense_Mutation p.D461Y 0.39 deleterious(0.05) probably_damaging(0.992) TCGA-18-4083-01 9 131708257 131708257 G A DOLK Silent p.A442A 0.38 TCGA-18-4083-01 9 140083574 140083574 G C SSNA1 Missense_Mutation p.E37Q 0.28 deleterious(0.05) possibly_damaging(0.662) TCGA-18-4083-01 9 32630333 32630333 C A TAF1L Nonsense_Mutation p.E1749* 0.04 TCGA-18-4083-01 9 4117993 4117993 G A GLIS3 Silent p.G495G 0.19 TCGA-18-4083-01 9 4625422 4625422 T G SPATA6L Missense_Mutation p.T134P 0.19 tolerated(0.26) possibly_damaging(0.855) TCGA-18-4083-01 9 73213485 73213485 G C TRPM3 Silent p.V954V 0.41 TCGA-18-4083-01 9 84532360 84532360 C G SPATA31D5P RNA 0.71 TCGA-18-4083-01 9 84607401 84607401 C T SPATA31D1 Silent p.I672I 0.27 TCGA-18-4083-01 9 8518216 8518216 C A PTPRD Missense_Mutation p.R392M 0.16 tolerated(0.1) probably_damaging(0.998) TCGA-18-4083-01 9 97203277 97203277 G A HIATL1 Missense_Mutation p.A136T 0.74 tolerated(0.12) benign(0.2) TCGA-18-4083-01 X 101821930 101821930 G T NXF4 RNA 0.83 TCGA-18-4083-01 X 134990721 134990721 C A SAGE1 Silent p.S462S 0.75 TCGA-18-4083-01 X 142967238 142967238 C A UBE2NL Silent p.T12T 0.27 TCGA-18-4083-01 X 142967239 142967239 C A UBE2NL Missense_Mutation p.Q13K 0.25 tolerated(0.21) benign(0.018) TCGA-18-4083-01 X 152937080 152937080 C A PNCK Missense_Mutation p.M237I 0.70 deleterious(0.03) benign(0.204) TCGA-18-4083-01 X 31089712 31089712 T A FTHL17 Missense_Mutation p.Q120L 0.78 deleterious(0.01) benign(0.178) TCGA-18-4083-01 X 32583829 32583829 C G DMD Missense_Mutation p.S661T 0.74 possibly_damaging(0.68) TCGA-18-4083-01 X 35985769 35985769 A T CXorf22 Missense_Mutation p.K545M 0.78 deleterious(0.01) benign(0.337) TCGA-18-4083-01 X 41495833 41495833 T A CASK Nonsense_Mutation p.K305* 0.38 TCGA-18-4083-01 X 41495834 41495834 T G CASK Silent p.L304L 0.39 TCGA-18-4083-01 X 48558930 48558930 A G SUV39H1 Missense_Mutation p.Y205C 0.75 deleterious(0) probably_damaging(1) TCGA-18-4083-01 X 5821721 5821721 G T NLGN4X Missense_Mutation p.P333Q 0.79 deleterious(0.02) benign(0.083) TCGA-18-4083-01 X 6995377 6995377 T A HDHD1 Missense_Mutation p.S155C 0.86 deleterious(0.02) possibly_damaging(0.886) TCGA-18-4083-01 X 73065376 73065376 G T XIST RNA 0.85 TCGA-18-4083-01 X 80047436 80047436 A T BRWD3 Missense_Mutation p.L116Q 0.88 tolerated(0.13) benign(0.027) TCGA-18-4083-01 X 83724271 83724271 G A HDX Missense_Mutation p.P154S 0.82 tolerated(0.26) possibly_damaging(0.724) TCGA-18-4721-01 10 30318554 30318554 T C KIAA1462 Missense_Mutation p.M175V 0.25 tolerated(0.26) benign(0.023) TCGA-18-4721-01 10 49482658 49482658 T A FRMPD2 5'UTR 0.24 TCGA-18-4721-01 10 85993952 85993952 G A LRIT1 Missense_Mutation p.P258S 0.07 tolerated(0.31) benign(0.158) TCGA-18-4721-01 10 95380397 95380397 T C PDE6C Silent p.H163H 0.06 TCGA-18-4721-01 11 10821167 10821167 T C EIF4G2 Silent p.K752K 0.24 TCGA-18-4721-01 11 113860284 113860284 G T HTR3A Silent p.S450S 0.22 TCGA-18-4721-01 11 122720812 122720812 T A CRTAM Missense_Mutation p.V28E 0.13 deleterious(0) probably_damaging(0.988) TCGA-18-4721-01 11 17426064 17426064 C T ABCC8 Silent p.A1184A 0.07 TCGA-18-4721-01 11 22277035 22277035 G T ANO5 Missense_Mutation p.M433I 0.22 deleterious(0.03) probably_damaging(0.996) TCGA-18-4721-01 11 22384297 22384297 G A SLC17A6 Missense_Mutation p.G225E 0.23 deleterious(0) probably_damaging(0.999) TCGA-18-4721-01 11 4903941 4903941 C A OR51T1 Missense_Mutation p.P298Q 0.11 deleterious(0) probably_damaging(0.964) TCGA-18-4721-01 11 5142492 5142492 C T OR52A4 RNA 0.20 TCGA-18-4721-01 11 55340171 55340171 A C OR4C16 Missense_Mutation p.T190P 0.18 deleterious(0) probably_damaging(0.988) TCGA-18-4721-01 11 55406404 55406404 C A OR4P4 Missense_Mutation p.H191N 0.39 deleterious(0.02) benign(0.022) TCGA-18-4721-01 11 55418601 55418601 C G OR4S2 Silent p.V74V 0.39 TCGA-18-4721-01 11 55657502 55657502 C A TRIM51 Silent p.L282L 0.18 TCGA-18-4721-01 11 55798382 55798382 C T OR5AS1 Missense_Mutation p.T163I 0.14 tolerated(0.09) benign(0.125) TCGA-18-4721-01 11 60885660 60885660 G A CD5 Silent p.R36R 0.22 TCGA-18-4721-01 11 62342847 62342847 G T TUT1 Missense_Mutation p.R820S 0.19 deleterious(0) probably_damaging(0.999) TCGA-18-4721-01 11 63277350 63277350 T C LGALS12 Missense_Mutation p.V181A 0.16 deleterious(0.02) benign(0.041) TCGA-18-4721-01 11 64846928 64846928 G C CDCA5 Missense_Mutation p.P192R 0.19 tolerated(0.06) possibly_damaging(0.882) TCGA-18-4721-01 11 77412491 77412491 A G RSF1 Missense_Mutation p.F595L 0.21 tolerated_low_confidence(0.73) benign(0.001) TCGA-18-4721-01 11 84028000 84028000 C G DLG2 Intron 0.18 TCGA-18-4721-01 11 92086219 92086219 T C FAT3 Missense_Mutation p.L314P 0.24 possibly_damaging(0.905) TCGA-18-4721-01 11 92533104 92533104 G T FAT3 Missense_Mutation p.V2309F 0.24 possibly_damaging(0.903) TCGA-18-4721-01 12 101794928 101794928 G C ARL1 Nonsense_Mutation p.S83* 0.20 TCGA-18-4721-01 12 112844596 112844596 G A RPL6 Silent p.T145T 0.15 TCGA-18-4721-01 12 11546368 11546368 G A PRB2 Missense_Mutation p.P215L 0.11 tolerated(0.7) unknown(0) TCGA-18-4721-01 12 120172134 120172134 G C CIT Missense_Mutation p.T1062S 0.19 tolerated(0.23) benign(0.038) TCGA-18-4721-01 12 12232614 12232614 G T BCL2L14 Silent p.S125S 0.12 TCGA-18-4721-01 12 133435751 133435751 C T CHFR Missense_Mutation p.V284I 0.10 tolerated(0.26) benign(0.001) TCGA-18-4721-01 12 14949741 14949741 C T WBP11 Silent p.K129K 0.29 TCGA-18-4721-01 12 51759273 51759273 G A GALNT6 Missense_Mutation p.A252V 0.21 deleterious(0) probably_damaging(1) TCGA-18-4721-01 12 53045439 53045439 A G KRT2 Missense_Mutation p.L163P 0.23 deleterious(0) probably_damaging(0.999) TCGA-18-4721-01 12 53899892 53899892 G A TARBP2 Missense_Mutation p.R354H 0.19 tolerated(0.06) benign(0) TCGA-18-4721-01 12 65449838 65449838 C A WIF1 Missense_Mutation p.G299C 0.15 deleterious(0) probably_damaging(1) TCGA-18-4721-01 12 7362674 7362674 C T PEX5 Missense_Mutation p.P607L 0.12 deleterious(0.01) benign(0.227) TCGA-18-4721-01 12 85285815 85285815 C T SLC6A15 Missense_Mutation p.A29T 0.25 tolerated(0.12) benign(0.001) TCGA-18-4721-01 12 86374017 86374017 G T MGAT4C Missense_Mutation p.H163N 0.15 deleterious(0.01) probably_damaging(0.983) TCGA-18-4721-01 12 86374018 86374018 G T MGAT4C Missense_Mutation p.H162Q 0.16 tolerated(0.53) benign(0.115) TCGA-18-4721-01 13 46730657 46730657 T C LCP1 Missense_Mutation p.N136S 0.20 tolerated(0.44) benign(0) TCGA-18-4721-01 13 53307423 53307423 C T LECT1 Silent p.G95G 0.13 TCGA-18-4721-01 14 21109802 21109802 C G OR6S1 Missense_Mutation p.A17P 0.17 deleterious(0.04) possibly_damaging(0.759) TCGA-18-4721-01 14 21794322 21794322 A T RPGRIP1 Missense_Mutation p.E900D 0.18 deleterious(0) benign(0.013) TCGA-18-4721-01 14 21859633 21859633 G A CHD8 Nonsense_Mutation p.R2352* 0.18 TCGA-18-4721-01 14 24975388 24975388 C A CMA1 Missense_Mutation p.W149L 0.26 deleterious(0) probably_damaging(1) TCGA-18-4721-01 14 57092202 57092202 G T TMEM260 Nonsense_Mutation p.G501* 0.26 TCGA-18-4721-01 14 61115926 61115926 C T SIX1 5'UTR 0.17 TCGA-18-4721-01 14 81557425 81557425 C G TSHR Missense_Mutation p.N135K 0.10 deleterious(0) probably_damaging(0.997) TCGA-18-4721-01 14 89168804 89168804 C G EML5 Missense_Mutation p.V742L 0.04 deleterious(0.03) benign(0.127) TCGA-18-4721-01 14 95058578 95058578 G T SERPINA5 3'UTR 0.49 TCGA-18-4721-01 15 100533367 100533367 G A ADAMTS17 Silent p.T945T 0.19 TCGA-18-4721-01 15 24924486 24924486 G A NPAP1 3'UTR 0.16 TCGA-18-4721-01 15 27571980 27571980 G T GABRG3 Missense_Mutation p.A99S 0.18 tolerated(0.42) probably_damaging(0.996) TCGA-18-4721-01 15 34526054 34526054 C G SLC12A6 3'UTR 0.10 TCGA-18-4721-01 15 43363018 43363018 C A UBR1 Nonsense_Mutation p.E212* 0.06 TCGA-18-4721-01 15 86270386 86270386 G A AKAP13 Silent p.G2308G 0.23 TCGA-18-4721-01 15 88727478 88727478 G T NTRK3 Missense_Mutation p.L101I 0.15 tolerated(0.39) benign(0.168) TCGA-18-4721-01 15 89744375 89744375 G A ABHD2 3'UTR 0.18 TCGA-18-4721-01 15 91795123 91795123 C A SV2B Silent p.R176R 0.20 TCGA-18-4721-01 16 30080176 30080176 G A ALDOA Silent p.K193K 0.17 TCGA-18-4721-01 16 50245246 50245246 A T PAPD5 Missense_Mutation p.E202D 0.20 deleterious(0) probably_damaging(0.999) TCGA-18-4721-01 16 55734171 55734171 A T SLC6A2 Missense_Mutation p.I571F 0.30 tolerated(0.23) benign(0.008) TCGA-18-4721-01 16 71319538 71319538 C T CMTR2 Missense_Mutation p.G96R 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-18-4721-01 16 80718824 80718824 T G CDYL2 Missense_Mutation p.K76T 0.24 tolerated(0.2) benign(0.287) TCGA-18-4721-01 16 88052143 88052143 G A BANP Silent p.T247T 0.18 TCGA-18-4721-01 17 29496972 29496972 G T NF1 Missense_Mutation p.Q181H 0.16 deleterious(0) benign(0.254) TCGA-18-4721-01 17 48655853 48655853 G A CACNA1G Silent p.K743K 0.28 TCGA-18-4721-01 17 62893229 62893229 C A LRRC37A3 Silent p.L49L 0.07 TCGA-18-4721-01 17 72352884 72352884 C T BTBD17 Missense_Mutation p.R450H 0.09 deleterious(0.04) probably_damaging(0.999) TCGA-18-4721-01 17 7577524 7577526 TGA - TP53 In_Frame_Del p.L252_T253delinsP 0.29 TCGA-18-4721-01 18 21451477 21451477 G A LAMA3 Missense_Mutation p.R1617H 0.24 benign(0.021) TCGA-18-4721-01 18 28588002 28588002 G C DSC3 Missense_Mutation p.T548R 0.06 deleterious(0) probably_damaging(1) TCGA-18-4721-01 18 28648028 28648028 A T DSC2 Missense_Mutation p.L887M 0.18 deleterious(0) probably_damaging(1) TCGA-18-4721-01 18 3534195 3534195 C A DLGAP1 Missense_Mutation p.D826Y 0.09 deleterious(0) probably_damaging(0.926) TCGA-18-4721-01 18 40323576 40323576 C T RIT2 Missense_Mutation p.R179K 0.22 deleterious(0.02) probably_damaging(0.91) TCGA-18-4721-01 18 47432926 47432926 C T MYO5B Silent p.L759L 0.18 TCGA-18-4721-01 18 5407707 5407707 T A EPB41L3 Missense_Mutation p.K717M 0.09 tolerated(0.09) benign(0.363) TCGA-18-4721-01 18 5428437 5428437 C T EPB41L3 Missense_Mutation p.G314R 0.09 deleterious(0) probably_damaging(1) TCGA-18-4721-01 18 5428438 5428438 T A EPB41L3 Missense_Mutation p.L313F 0.09 deleterious(0) probably_damaging(1) TCGA-18-4721-01 18 67508750 67508750 T C DOK6 3'UTR 0.33 TCGA-18-4721-01 19 13941421 13941421 G A ZSWIM4 Missense_Mutation p.A843T 0.21 deleterious(0.02) unknown(0) TCGA-18-4721-01 19 20044847 20044847 C T ZNF93 Silent p.F361F 0.15 TCGA-18-4721-01 19 20829110 20829110 C A ZNF626 Missense_Mutation p.E35D 0.16 deleterious(0.02) probably_damaging(0.992) TCGA-18-4721-01 19 2334702 2334702 G T AC004410.3 3'Flank 0.19 TCGA-18-4721-01 19 3179893 3179893 G C S1PR4 Missense_Mutation p.S368T 0.23 tolerated(0.06) possibly_damaging(0.585) TCGA-18-4721-01 19 36370346 36370346 C A APLP1 3'UTR 0.19 TCGA-18-4721-01 19 39798962 39798962 C T LRFN1 Missense_Mutation p.V543I 0.28 tolerated(1) benign(0.023) TCGA-18-4721-01 19 40377036 40377036 T C FCGBP Missense_Mutation p.N3796D 0.53 possibly_damaging(0.621) TCGA-18-4721-01 19 48342762 48342762 G A CRX Silent p.L146L 0.27 TCGA-18-4721-01 19 49459500 49459500 C TG BAX Frame_Shift_Ins p.R94Afs*5 0.20 TCGA-18-4721-01 1 114445388 114445388 C A AP4B1 Silent p.L70L 0.36 TCGA-18-4721-01 1 117078706 117078706 G C CD58 Nonsense_Mutation p.S170* 0.19 TCGA-18-4721-01 1 144880779 144880779 G A PDE4DIP Silent p.S1283S 0.04 TCGA-18-4721-01 1 152285005 152285005 C A FLG Missense_Mutation p.R786M 0.09 probably_damaging(0.962) TCGA-18-4721-01 1 152732065 152732065 A G KPRP Translation_Start_Site p.M1? 0.32 deleterious(0) probably_damaging(0.916) TCGA-18-4721-01 1 160160462 160160462 A G CASQ1 5'UTR 0.18 TCGA-18-4721-01 1 162039943 162039943 A T NOS1AP 5'UTR 0.24 TCGA-18-4721-01 1 165322491 165322491 C A LMX1A Missense_Mutation p.V29L 0.15 tolerated(0.74) benign(0.004) TCGA-18-4721-01 1 172520690 172520690 C G SUCO Nonsense_Mutation p.S34* 0.19 TCGA-18-4721-01 1 174987657 174987657 A G MRPS14 Missense_Mutation p.M34T 0.11 tolerated(0.09) benign(0.014) TCGA-18-4721-01 1 182781313 182781313 G C NPL Missense_Mutation p.V85L 0.40 deleterious(0.01) probably_damaging(0.919) TCGA-18-4721-01 1 186276765 186276765 G A PRG4 Silent p.E638E 0.21 TCGA-18-4721-01 1 204588134 204588134 G A LRRN2 Silent p.R329R 0.46 TCGA-18-4721-01 1 20501520 20501520 G T PLA2G2C Silent p.I53I 0.20 TCGA-18-4721-01 1 216424244 216424244 C G USH2A Splice_Site p.X723_splice 0.40 TCGA-18-4721-01 1 230796514 230796514 A G COG2 Missense_Mutation p.D82G 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-18-4721-01 1 240341284 240341284 G T FMN2 Missense_Mutation p.G616W 0.38 unknown(0) TCGA-18-4721-01 1 240371038 240371038 C A FMN2 Missense_Mutation p.P976T 0.38 unknown(0) TCGA-18-4721-01 1 248112524 248112524 A T OR2L8 Missense_Mutation p.Y122F 0.48 tolerated(0.06) benign(0.1) TCGA-18-4721-01 1 68949739 68949739 A G DEPDC1 Silent p.Y268Y 0.26 TCGA-18-4721-01 1 86952423 86952423 G T CLCA1 Missense_Mutation p.R390L 0.30 tolerated(0.07) possibly_damaging(0.899) TCGA-18-4721-01 20 25201919 25201919 G T ENTPD6 Missense_Mutation p.G332V 0.23 deleterious(0.01) probably_damaging(0.983) TCGA-18-4721-01 21 27090050 27090050 C T JAM2 3'Flank 0.24 TCGA-18-4721-01 22 19371175 19371175 G T HIRA Silent p.I461I 0.10 TCGA-18-4721-01 22 42071111 42071111 C T NHP2L1 Silent p.L71L 0.16 TCGA-18-4721-01 22 45221390 45221390 C A ARHGAP8 Missense_Mutation p.H293Q 0.27 tolerated(0.81) benign(0.014) TCGA-18-4721-01 22 50718158 50718160 ATG C PLXNB2 Frame_Shift_Del p.H1430Afs*27 0.16 TCGA-18-4721-01 2 10925052 10925052 G C PDIA6 Intron 0.21 TCGA-18-4721-01 2 113069435 113069435 A G ZC3H6 Missense_Mutation p.K223R 0.17 tolerated(0.17) benign(0.037) TCGA-18-4721-01 2 166164370 166164370 G T SCN2A Missense_Mutation p.M133I 0.15 tolerated(0.09) benign(0.012) TCGA-18-4721-01 2 1664699 1664699 C A PXDN Silent p.R597R 0.28 TCGA-18-4721-01 2 1664700 1664700 C A PXDN Missense_Mutation p.R597L 0.29 tolerated(0.14) possibly_damaging(0.876) TCGA-18-4721-01 2 168102139 168102139 A G XIRP2 Missense_Mutation p.I1413V 0.19 benign(0.108) TCGA-18-4721-01 2 169780261 169780261 G A ABCB11 Silent p.T1279T 0.20 TCGA-18-4721-01 2 175618376 175618376 G A CHRNA1 Silent p.S236S 0.26 TCGA-18-4721-01 2 178098944 178098944 C T NFE2L2 Missense_Mutation p.R34Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-18-4721-01 2 179454485 179454485 G A TTN Missense_Mutation p.T20656I 0.20 TCGA-18-4721-01 2 183730876 183730876 G A FRZB Silent p.A135A 0.29 TCGA-18-4721-01 2 207452057 207452057 A T ADAM23 Silent p.P582P 0.23 TCGA-18-4721-01 2 218713180 218713180 T A TNS1 Missense_Mutation p.E562V 0.20 tolerated(0.08) possibly_damaging(0.638) TCGA-18-4721-01 2 219137389 219137389 G A PNKD Intron 0.19 TCGA-18-4721-01 2 225376242 225376242 C A CUL3 Nonsense_Mutation p.E238* 0.21 TCGA-18-4721-01 2 27806571 27806571 T C ZNF512 Missense_Mutation p.V26A 0.22 deleterious_low_confidence(0.01) probably_damaging(0.93) TCGA-18-4721-01 2 33036187 33036187 G T TTC27 Missense_Mutation p.G699C 0.27 deleterious(0) probably_damaging(1) TCGA-18-4721-01 2 44065213 44065213 A G ABCG5 Intron 0.50 TCGA-18-4721-01 2 65299172 65299172 G T CEP68 Missense_Mutation p.Q314H 0.18 tolerated(0.09) benign(0.067) TCGA-18-4721-01 3 108351803 108351803 C A DZIP3 Missense_Mutation p.L234I 0.19 tolerated(0.27) benign(0.046) TCGA-18-4721-01 3 14706570 14706570 G A CCDC174 Missense_Mutation p.R174H 0.13 deleterious(0) possibly_damaging(0.556) TCGA-18-4721-01 3 174814846 174814846 T C NAALADL2 Missense_Mutation p.S104P 0.04 tolerated(1) benign(0.002) TCGA-18-4721-01 3 182681668 182681668 C G DCUN1D1 Splice_Site p.X130_splice 0.03 TCGA-18-4721-01 3 42445550 42445550 C A LYZL4 Missense_Mutation p.G120V 0.21 deleterious(0) probably_damaging(1) TCGA-18-4721-01 3 47614277 47614277 G T CSPG5 Silent p.G427G 0.20 TCGA-18-4721-01 3 57489909 57489909 G A DNAH12 Missense_Mutation p.T307I 0.15 deleterious(0) possibly_damaging(0.891) TCGA-18-4721-01 3 73433255 73433255 G T PDZRN3 Missense_Mutation p.T821N 0.24 tolerated(0.39) benign(0) TCGA-18-4721-01 3 74419134 74419134 C A CNTN3 Missense_Mutation p.G223C 0.19 deleterious(0) probably_damaging(1) TCGA-18-4721-01 3 74419135 74419135 C T CNTN3 Missense_Mutation p.M222I 0.18 deleterious(0.02) possibly_damaging(0.766) TCGA-18-4721-01 3 97454768 97454768 G T EPHA6 Splice_Site p.X979_splice 0.18 TCGA-18-4721-01 4 111539595 111539595 G T PITX2 Missense_Mutation p.P221T 0.23 deleterious(0.04) benign(0.439) TCGA-18-4721-01 4 119203230 119203230 A G PRSS12 Missense_Mutation p.M830T 0.32 deleterious(0) benign(0.297) TCGA-18-4721-01 4 134072195 134072195 T C PCDH10 Silent p.L300L 0.27 TCGA-18-4721-01 4 134072565 134072565 G T PCDH10 Nonsense_Mutation p.E424* 0.25 TCGA-18-4721-01 4 144468620 144468620 A G SMARCA5 Silent p.Q912Q 0.35 TCGA-18-4721-01 4 146479006 146479006 C G SMAD1 Missense_Mutation p.L440V 0.28 deleterious(0) probably_damaging(0.988) TCGA-18-4721-01 4 173269787 173269787 C A GALNTL6 Missense_Mutation p.T167N 0.10 deleterious(0) possibly_damaging(0.507) TCGA-18-4721-01 4 183714169 183714169 G C TENM3 Missense_Mutation p.R2115T 0.11 tolerated(0.11) possibly_damaging(0.587) TCGA-18-4721-01 4 184626196 184626196 G T TRAPPC11 Nonsense_Mutation p.E1010* 0.18 TCGA-18-4721-01 4 42403508 42403508 G A SHISA3 3'UTR 0.25 TCGA-18-4721-01 4 5961029 5961029 A C C4orf50 3'UTR 0.16 TCGA-18-4721-01 4 650791 650791 A C PDE6B Missense_Mutation p.E412D 0.24 tolerated(0.24) benign(0.045) TCGA-18-4721-01 4 89671652 89671652 G A FAM13A Silent p.Y621Y 0.18 TCGA-18-4721-01 4 9784721 9784721 C T DRD5 Silent p.P356P 0.21 TCGA-18-4721-01 5 107216707 107216707 G A FBXL17 Intron 0.28 TCGA-18-4721-01 5 140482445 140482445 G T PCDHB3 Missense_Mutation p.D738Y 0.22 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-18-4721-01 5 140616485 140616485 T C PCDHB18 RNA 0.27 TCGA-18-4721-01 5 147661774 147661774 T A SPINK13 Nonsense_Mutation p.C72* 0.20 TCGA-18-4721-01 5 176637416 176637416 A T NSD1 Silent p.T672T 0.20 TCGA-18-4721-01 5 31409194 31409194 C A DROSHA Nonsense_Mutation p.E1275* 0.16 TCGA-18-4721-01 5 37605177 37605177 C A WDR70 Missense_Mutation p.T310K 0.31 deleterious(0.04) benign(0.175) TCGA-18-4721-01 5 80363900 80363900 C T RASGRF2 Missense_Mutation p.H149Y 0.29 deleterious(0.04) probably_damaging(0.998) TCGA-18-4721-01 5 82789510 82789510 C G VCAN Missense_Mutation p.D197E 0.21 deleterious(0) probably_damaging(0.999) TCGA-18-4721-01 6 111982872 111982872 C A FYN 3'UTR 0.10 TCGA-18-4721-01 6 12122201 12122201 G A HIVEP1 Missense_Mutation p.G725R 0.28 tolerated(0.15) possibly_damaging(0.774) TCGA-18-4721-01 6 129475703 129475703 A G LAMA2 Missense_Mutation p.R361G 0.10 deleterious(0.04) benign(0.001) TCGA-18-4721-01 6 149982764 149982764 T C LATS1 3'UTR 0.28 TCGA-18-4721-01 6 159044617 159044617 G A TMEM181 Missense_Mutation p.R448Q 0.07 tolerated(0.22) possibly_damaging(0.506) TCGA-18-4721-01 6 165749635 165749635 C A PDE10A Silent p.T748T 0.11 TCGA-18-4721-01 6 27100317 27100317 G C HIST1H2BJ Missense_Mutation p.F71L 0.10 deleterious_low_confidence(0.02) benign(0.291) TCGA-18-4721-01 6 28542626 28542626 C T SCAND3 Missense_Mutation p.C619Y 0.21 deleterious_low_confidence(0) benign(0.06) TCGA-18-4721-01 6 28542795 28542795 C T SCAND3 Missense_Mutation p.A563T 0.16 tolerated_low_confidence(0.19) benign(0.002) TCGA-18-4721-01 6 29323110 29323110 A G OR5V1 Missense_Mutation p.I288T 0.29 deleterious(0) benign(0.118) TCGA-18-4721-01 6 33272838 33272838 C G TAPBP Missense_Mutation p.E266Q 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-18-4721-01 6 41754618 41754618 G T PRICKLE4 Silent p.L302L 0.24 TCGA-18-4721-01 6 42985434 42985434 G T KLHDC3 Splice_Site p.X111_splice 0.26 TCGA-18-4721-01 6 66204975 66204975 G T EYS Missense_Mutation p.S110Y 0.08 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-18-4721-01 6 7247354 7247354 C T RREB1 Silent p.S1557S 0.35 TCGA-18-4721-01 6 80223047 80223047 A C LCA5 Missense_Mutation p.F201C 0.23 tolerated(0.19) benign(0.024) TCGA-18-4721-01 6 86201753 86201753 T C NT5E Silent p.D473D 0.18 TCGA-18-4721-01 6 97246607 97246607 C T GPR63 Missense_Mutation p.S334N 0.28 tolerated(0.06) probably_damaging(0.978) TCGA-18-4721-01 7 100676743 100676743 T G MUC17 Silent p.T682T 0.20 TCGA-18-4721-01 7 106508508 106508508 G T PIK3CG Missense_Mutation p.V168L 0.22 tolerated(0.11) possibly_damaging(0.667) TCGA-18-4721-01 7 107791176 107791176 C G NRCAM Intron 0.38 TCGA-18-4721-01 7 116955161 116955161 G T WNT2 Silent p.A184A 0.16 TCGA-18-4721-01 7 122635320 122635320 C T TAS2R16 Silent p.L123L 0.16 TCGA-18-4721-01 7 14217688 14217688 C A DGKB Silent p.R738R 0.15 TCGA-18-4721-01 7 149515739 149515739 A T SSPO Splice_Site 0.11 TCGA-18-4721-01 7 20698849 20698849 C A ABCB5 Intron 0.28 TCGA-18-4721-01 7 23766889 23766889 G T STK31 Missense_Mutation p.Q93H 0.16 deleterious(0.01) benign(0.279) TCGA-18-4721-01 7 27135598 27135598 G A HOXA1 5'Flank 0.15 TCGA-18-4721-01 7 27150111 27150111 C A HOXA3 Missense_Mutation p.C50F 0.15 deleterious(0.01) possibly_damaging(0.695) TCGA-18-4721-01 7 6183809 6183809 C T USP42 Silent p.T324T 0.21 TCGA-18-4721-01 7 71488694 71488694 G T CALN1 Nonsense_Mutation p.S150* 0.28 TCGA-18-4721-01 7 7412687 7412703 ATTCATTTCTTTGTGGA - COL28A1 Frame_Shift_Del p.F945Sfs*5 0.13 TCGA-18-4721-01 7 77764405 77764405 G T MAGI2 Missense_Mutation p.H988Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-18-4721-01 7 81386586 81386586 C T HGF Missense_Mutation p.R134H 0.25 tolerated(0.12) benign(0.155) TCGA-18-4721-01 7 93519971 93519972 - G TFPI2 Frame_Shift_Ins p.L7Pfs*26 0.26 TCGA-18-4721-01 7 96251904 96251904 C A RP11-682N22.1 RNA 0.20 TCGA-18-4721-01 7 99048393 99048393 G C CPSF4 Missense_Mutation p.E158Q 0.15 tolerated(0.08) benign(0.285) TCGA-18-4721-01 7 99711547 99711547 G T TAF6 Silent p.R100R 0.23 TCGA-18-4721-01 8 110424585 110424585 C A PKHD1L1 Missense_Mutation p.A726E 0.21 tolerated(0.27) benign(0.004) TCGA-18-4721-01 8 113418957 113418957 C A CSMD3 Splice_Site p.X1869_splice 0.22 TCGA-18-4721-01 8 2966161 2966161 A C CSMD1 Missense_Mutation p.F2240V 0.22 probably_damaging(0.995) TCGA-18-4721-01 8 55372672 55372672 A T SOX17 3'UTR 0.38 TCGA-18-4721-01 8 59404139 59404139 T A CYP7A1 Silent p.I470I 0.26 TCGA-18-4721-01 8 6728282 6728282 T C DEFB1 Missense_Mutation p.Q43R 0.28 tolerated(0.35) possibly_damaging(0.728) TCGA-18-4721-01 8 71071794 71071794 C A NCOA2 Missense_Mutation p.R357L 0.17 deleterious(0) possibly_damaging(0.644) TCGA-18-4721-01 8 72964957 72964957 G T TRPA1 Missense_Mutation p.A563D 0.20 deleterious(0) probably_damaging(0.986) TCGA-18-4721-01 8 74903753 74903753 A G LY96 Missense_Mutation p.N26D 0.18 deleterious(0.02) possibly_damaging(0.566) TCGA-18-4721-01 8 95531467 95531467 A C KIAA1429 Missense_Mutation p.I753M 0.07 tolerated(0.12) benign(0.008) TCGA-18-4721-01 8 9562186 9562186 A G TNKS Missense_Mutation p.H374R 0.26 deleterious(0.02) probably_damaging(0.993) TCGA-18-4721-01 8 99234724 99234724 G T NIPAL2 Missense_Mutation p.Q181K 0.18 tolerated(0.84) benign(0.022) TCGA-18-4721-01 9 101304211 101304211 G A GABBR2 Missense_Mutation p.H192Y 0.47 tolerated(0.65) benign(0.002) TCGA-18-4721-01 9 111656249 111656249 T C IKBKAP Missense_Mutation p.K945R 0.38 tolerated(0.1) probably_damaging(0.923) TCGA-18-4721-01 9 26928209 26928209 C A PLAA Missense_Mutation p.A152S 0.25 tolerated(0.15) probably_damaging(0.973) TCGA-18-4721-01 9 35378362 35378362 C T UNC13B Silent p.V629V 0.16 TCGA-18-4721-01 9 35449876 35449876 T - ATP8B5P RNA 0.31 TCGA-18-4721-01 9 86482655 86482655 C T KIF27 Missense_Mutation p.E960K 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-18-4721-01 9 97041047 97041047 T C ZNF169 5'UTR 0.04 TCGA-18-4721-01 X 114141480 114141480 G A HTR2C Silent p.E293E 0.47 TCGA-18-4721-01 X 118215438 118215438 C A KIAA1210 Missense_Mutation p.V1662F 0.33 deleterious(0) benign(0.07) TCGA-18-4721-01 X 135632948 135632948 G A VGLL1 Missense_Mutation p.R219H 0.39 tolerated(0.93) benign(0.001) TCGA-18-5592-01 10 24727407 24727407 G T KIAA1217 Missense_Mutation p.R282M 0.41 deleterious(0) probably_damaging(0.967) TCGA-18-5592-01 10 26414384 26414384 G T MYO3A Missense_Mutation p.C654F 0.42 deleterious(0) possibly_damaging(0.474) TCGA-18-5592-01 10 50916733 50916733 T A C10orf53 3'UTR 0.36 TCGA-18-5592-01 10 53457321 53457321 G C CSTF2T 3'UTR 0.29 TCGA-18-5592-01 10 90591649 90591649 A C ANKRD22 Missense_Mutation p.H52Q 0.60 deleterious(0.03) possibly_damaging(0.653) TCGA-18-5592-01 11 100863394 100863394 G - TMEM133 Frame_Shift_Del p.G119Vfs*16 0.30 TCGA-18-5592-01 11 106810465 106810465 G T GUCY1A2 Silent p.T309T 0.44 TCGA-18-5592-01 11 106810466 106810466 G T GUCY1A2 Missense_Mutation p.T309N 0.43 tolerated(0.17) benign(0.026) TCGA-18-5592-01 11 118769595 118769595 G A BCL9L Silent p.P1343P 0.38 TCGA-18-5592-01 11 121061508 121061508 C A TECTA Missense_Mutation p.T2154N 0.31 deleterious_low_confidence(0.01) benign(0.043) TCGA-18-5592-01 11 124763860 124763860 C A ROBO4 Missense_Mutation p.R467L 0.17 deleterious(0.01) possibly_damaging(0.828) TCGA-18-5592-01 11 128638130 128638130 C T FLI1 Silent p.N116N 0.35 TCGA-18-5592-01 11 128709003 128709003 C A KCNJ1 3'UTR 0.33 TCGA-18-5592-01 11 132205014 132205014 G T NTM Missense_Mutation p.V348F 0.11 tolerated(0.45) benign(0.001) TCGA-18-5592-01 11 134182735 134182735 G T GLB1L3 Missense_Mutation p.G485V 0.37 deleterious(0) probably_damaging(0.932) TCGA-18-5592-01 11 19955123 19955123 G A NAV2 Missense_Mutation p.A468T 0.08 tolerated(0.43) benign(0.001) TCGA-18-5592-01 11 26619912 26619912 C - ANO3 Frame_Shift_Del p.T484Qfs*14 0.34 TCGA-18-5592-01 11 28056982 28056982 G C KIF18A Missense_Mutation p.S819C 0.25 deleterious(0) probably_damaging(0.999) TCGA-18-5592-01 11 3022364 3022364 G A CARS Nonsense_Mutation p.Q826* 0.66 TCGA-18-5592-01 11 31086091 31086091 A G DCDC1 Missense_Mutation p.L839P 0.27 tolerated(0.28) benign(0.083) TCGA-18-5592-01 11 46406689 46406689 C T CHRM4 Silent p.R473R 0.13 TCGA-18-5592-01 11 49178342 49178342 G T FOLH1 Missense_Mutation p.S517Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-18-5592-01 11 49597845 49597845 C G RP11-707M1.1 RNA 0.34 TCGA-18-5592-01 11 51411577 51411577 G C OR4A5 Silent p.T273T 0.14 TCGA-18-5592-01 11 51515751 51515751 A G OR4C46 Missense_Mutation p.Q157R 0.37 deleterious_low_confidence(0.01) benign(0.424) TCGA-18-5592-01 11 55653583 55653583 C A TRIM51 Intron 0.46 TCGA-18-5592-01 11 55656477 55656477 G T TRIM51 Missense_Mutation p.R254M 0.36 deleterious(0) possibly_damaging(0.764) TCGA-18-5592-01 11 56237098 56237098 G T OR5M3 Missense_Mutation p.N292K 0.22 deleterious(0) probably_damaging(0.931) TCGA-18-5592-01 11 56237099 56237099 T G OR5M3 Missense_Mutation p.N292T 0.22 deleterious(0.01) probably_damaging(0.931) TCGA-18-5592-01 11 58034498 58034498 G T OR10W1 Missense_Mutation p.P278Q 0.30 deleterious(0) probably_damaging(1) TCGA-18-5592-01 11 58343234 58343234 T G LPXN Intron 0.36 TCGA-18-5592-01 11 59620686 59620686 T C TCN1 Silent p.P410P 0.38 TCGA-18-5592-01 11 60671208 60671208 C A PRPF19 Nonsense_Mutation p.E49* 0.41 TCGA-18-5592-01 11 61643866 61643866 C A FADS3 Missense_Mutation p.G349C 0.35 deleterious(0) probably_damaging(1) TCGA-18-5592-01 11 64601086 64601086 C T CDC42BPG Missense_Mutation p.G871S 0.12 tolerated(0.93) benign(0.007) TCGA-18-5592-01 11 65721060 65721060 C A TSGA10IP RNA 0.47 TCGA-18-5592-01 11 66357908 66357912 AGGAG - CCDC87 3'UTR 0.09 TCGA-18-5592-01 11 74651838 74651838 G A XRRA1 Missense_Mutation p.P29L 0.30 tolerated(0.1) benign(0.032) TCGA-18-5592-01 11 77727789 77727789 C G KCTD14 Silent p.A206A 0.39 TCGA-18-5592-01 12 100646259 100646259 C A DEPDC4 3'UTR 0.69 TCGA-18-5592-01 12 101368579 101368579 A G ANO4 Intron 0.60 TCGA-18-5592-01 12 113758149 113758149 C A SLC8B1 Silent p.L227L 0.38 TCGA-18-5592-01 12 118465787 118465787 T A RFC5 Missense_Mutation p.L275M 0.40 deleterious(0.02) possibly_damaging(0.594) TCGA-18-5592-01 12 122750971 122750971 C G VPS33A 5'UTR 0.42 TCGA-18-5592-01 12 128899693 128899693 C - TMEM132C Frame_Shift_Del p.P168Hfs*3 0.21 TCGA-18-5592-01 12 130834398 130834398 T C PIWIL1 Intron 0.35 TCGA-18-5592-01 12 176600 176600 T A IQSEC3 Silent p.P184P 0.35 TCGA-18-5592-01 12 21689820 21689820 T A GYS2 3'UTR 0.39 TCGA-18-5592-01 12 33560269 33560269 G A SYT10 Silent p.L178L 0.03 TCGA-18-5592-01 12 40020102 40020102 T A C12orf40 5'UTR 0.52 TCGA-18-5592-01 12 48272874 48272874 G A VDR Missense_Mutation p.T58I 0.31 deleterious(0.04) possibly_damaging(0.735) TCGA-18-5592-01 12 50388016 50388016 C - RACGAP1 Frame_Shift_Del p.D413Mfs*10 0.32 TCGA-18-5592-01 12 55028642 55028642 T C LACRT 5'UTR 0.44 TCGA-18-5592-01 12 56351335 56351335 A T PMEL Missense_Mutation p.L251Q 0.40 deleterious(0) probably_damaging(1) TCGA-18-5592-01 13 111138064 111138064 G T COL4A2 Missense_Mutation p.G1030C 0.36 probably_damaging(0.989) TCGA-18-5592-01 13 111926211 111926211 T C ARHGEF7 Missense_Mutation p.I396T 0.40 deleterious(0) probably_damaging(0.96) TCGA-18-5592-01 13 113473630 113473630 G A ATP11A Missense_Mutation p.V195I 0.38 tolerated(0.09) benign(0.019) TCGA-18-5592-01 13 113773306 113773306 G C F7 Missense_Mutation p.R462P 0.39 deleterious(0.02) probably_damaging(0.94) TCGA-18-5592-01 13 26145830 26145830 G A ATP8A2 Silent p.A554A 0.40 TCGA-18-5592-01 13 28542705 28542705 G T CDX2 Missense_Mutation p.P147T 0.44 tolerated(0.07) benign(0.049) TCGA-18-5592-01 13 28608124 28608124 C A FLT3 Missense_Mutation p.K614N 0.40 tolerated(0.12) benign(0.05) TCGA-18-5592-01 13 29041090 29041090 G C FLT1 Missense_Mutation p.P113R 0.42 tolerated(0.18) benign(0.392) TCGA-18-5592-01 13 39448720 39448720 C G FREM2 Missense_Mutation p.P2760A 0.30 deleterious(0.03) benign(0.002) TCGA-18-5592-01 13 46543775 46543775 C T ZC3H13 Silent p.K968K 0.10 TCGA-18-5592-01 13 46733098 46733098 A T LCP1 Missense_Mutation p.F31I 0.42 tolerated(0.41) benign(0.001) TCGA-18-5592-01 13 49772213 49772213 A C FNDC3A Silent p.I862I 0.03 TCGA-18-5592-01 14 107169953 107169953 G A IGHV1-69 Missense_Mutation p.T110M 0.02 tolerated(0.08) possibly_damaging(0.588) TCGA-18-5592-01 14 19553635 19553635 G A POTEG Silent p.R73R 0.38 TCGA-18-5592-01 14 19574325 19574325 C A POTEG Missense_Mutation p.P461H 0.13 deleterious(0) possibly_damaging(0.841) TCGA-18-5592-01 14 20295985 20295985 C G OR4N2 Missense_Mutation p.I126M 0.30 deleterious(0) probably_damaging(0.91) TCGA-18-5592-01 14 20344966 20344966 C A OR4K2 Missense_Mutation p.D180E 0.41 deleterious(0) probably_damaging(1) TCGA-18-5592-01 14 20404636 20404636 C T OR4K1 Missense_Mutation p.L271F 0.46 deleterious(0.03) possibly_damaging(0.827) TCGA-18-5592-01 14 22362720 22362720 C A TRAV8-4 5'UTR 0.32 TCGA-18-5592-01 14 68217754 68217754 G A ZFYVE26 Intron 0.04 TCGA-18-5592-01 14 89016858 89016858 G A PTPN21 5'UTR 0.46 TCGA-18-5592-01 14 89192897 89192897 A G EML5 Missense_Mutation p.V392A 0.30 deleterious(0) probably_damaging(0.96) TCGA-18-5592-01 14 96178685 96178685 C T TCL1A Missense_Mutation p.V57I 0.39 tolerated(0.18) benign(0) TCGA-18-5592-01 14 99961958 99961958 G A CCNK Missense_Mutation p.D135N 0.44 deleterious(0.04) possibly_damaging(0.578) TCGA-18-5592-01 15 102346039 102346039 G T OR4F6 Silent p.L39L 0.28 TCGA-18-5592-01 15 22940827 22940827 G C CYFIP1 Silent p.A364A 0.50 TCGA-18-5592-01 15 24923727 24923727 G C NPAP1 Missense_Mutation p.D905H 0.48 deleterious(0.04) possibly_damaging(0.867) TCGA-18-5592-01 15 25344719 25344719 G T SNORD116-26 RNA 0.45 TCGA-18-5592-01 15 28506002 28506002 C A HERC2 Missense_Mutation p.R746L 0.22 benign(0.002) TCGA-18-5592-01 15 48063212 48063212 C T SEMA6D Missense_Mutation p.P818S 0.36 deleterious(0.04) benign(0.005) TCGA-18-5592-01 15 54586201 54586201 G T UNC13C Silent p.L1309L 0.43 TCGA-18-5592-01 15 65964148 65964148 G A DENND4A Silent p.F1481F 0.32 TCGA-18-5592-01 15 69714442 69714446 TAGGG - KIF23 Frame_Shift_Del p.G144Ifs*4 0.24 TCGA-18-5592-01 16 1306281 1306281 G A TPSD1 5'UTR 0.24 TCGA-18-5592-01 16 1306282 1306282 A T TPSD1 Translation_Start_Site p.M1? 0.24 tolerated_low_confidence(0.12) unknown(0) TCGA-18-5592-01 16 1412532 1412532 C A GNPTG Silent p.P202P 0.73 TCGA-18-5592-01 16 1814419 1814419 G T MAPK8IP3 Missense_Mutation p.G746C 0.80 deleterious(0.02) possibly_damaging(0.547) TCGA-18-5592-01 16 28620211 28620211 C G SULT1A1 Intron 0.20 TCGA-18-5592-01 16 614874 614874 C A C16orf11 Missense_Mutation p.A428E 0.59 tolerated(0.53) benign(0.108) TCGA-18-5592-01 16 77918563 77918563 C A VAT1L Missense_Mutation p.A314E 0.65 deleterious(0.01) probably_damaging(0.927) TCGA-18-5592-01 17 10450873 10450873 C G MYH2 Missense_Mutation p.E89D 0.35 deleterious(0.01) benign(0.05) TCGA-18-5592-01 17 10554936 10554936 G C MYH3 Missense_Mutation p.P133R 0.39 deleterious(0.01) probably_damaging(1) TCGA-18-5592-01 17 13977644 13977644 C T COX10 Silent p.C16C 0.35 TCGA-18-5592-01 17 15619515 15619515 A T ZNF286A Missense_Mutation p.E159D 0.37 tolerated(0.48) benign(0.006) TCGA-18-5592-01 17 20407203 20407203 C T RP11-434D2.7 3'Flank 0.05 TCGA-18-5592-01 17 27944061 27944061 C T CORO6 Splice_Site p.X252_splice 0.20 TCGA-18-5592-01 17 29527583 29527583 A G NF1 Silent p.L344L 0.40 TCGA-18-5592-01 17 37223941 37223941 C A PLXDC1 3'UTR 0.39 TCGA-18-5592-01 17 40021526 40021526 G A KLHL11 Missense_Mutation p.S33L 0.41 tolerated_low_confidence(0.15) benign(0.002) TCGA-18-5592-01 17 40345412 40345412 T G GHDC Missense_Mutation p.H63P 0.25 tolerated(0.18) benign(0.071) TCGA-18-5592-01 17 40717012 40717012 A T COASY Nonsense_Mutation p.K446* 0.47 TCGA-18-5592-01 17 41246321 41246321 T A BRCA1 Silent p.V409V 0.32 TCGA-18-5592-01 17 60088374 60088374 G C MED13 Missense_Mutation p.P502A 0.42 tolerated(0.88) benign(0) TCGA-18-5592-01 17 61986986 61986986 T A CSHL1 3'Flank 0.41 TCGA-18-5592-01 17 63526217 63526217 A G AXIN2 Silent p.Y803Y 0.03 TCGA-18-5592-01 17 72613346 72613346 C A CD300E Missense_Mutation p.G100V 0.33 deleterious(0) probably_damaging(1) TCGA-18-5592-01 17 7578394 7578394 T A TP53 Missense_Mutation p.H179L 0.81 tolerated(0.12) probably_damaging(1) TCGA-18-5592-01 17 79826687 79826687 G T ARHGDIA 3'UTR 0.43 TCGA-18-5592-01 18 14105676 14105676 C A ZNF519 Missense_Mutation p.G288V 0.40 deleterious(0) possibly_damaging(0.905) TCGA-18-5592-01 18 34647324 34647324 G A KIAA1328 Missense_Mutation p.G350R 0.44 tolerated(0.55) benign(0.015) TCGA-18-5592-01 18 40695531 40695531 G T RIT2 5'UTR 0.54 TCGA-18-5592-01 18 43310350 43310350 T A SLC14A1 Missense_Mutation p.V78D 0.08 tolerated(0.17) benign(0.005) TCGA-18-5592-01 18 56202301 56202301 C G ALPK2 Silent p.T1706T 0.40 TCGA-18-5592-01 18 61570215 61570215 C G SERPINB2 Nonsense_Mutation p.Y308* 0.33 TCGA-18-5592-01 18 63477136 63477136 A G CDH7 Missense_Mutation p.E136G 0.42 deleterious(0) probably_damaging(0.972) TCGA-18-5592-01 18 7011410 7011410 C A LAMA1 Missense_Mutation p.E1192D 0.45 tolerated(0.12) benign(0.02) TCGA-18-5592-01 19 11287340 11287340 G T KANK2 Missense_Mutation p.S566R 0.26 tolerated(0.27) possibly_damaging(0.558) TCGA-18-5592-01 19 14139032 14139032 C A RLN3 Missense_Mutation p.L6M 0.18 deleterious(0.02) possibly_damaging(0.637) TCGA-18-5592-01 19 15302611 15302611 C - NOTCH3 Frame_Shift_Del p.T250Hfs*122 0.38 TCGA-18-5592-01 19 15806829 15806829 G T CYP4F12 Missense_Mutation p.R400L 0.20 deleterious(0) probably_damaging(1) TCGA-18-5592-01 19 15905405 15905405 C T OR10H5 Missense_Mutation p.P183S 0.31 tolerated(0.17) benign(0.086) TCGA-18-5592-01 19 17664457 17664457 C G FAM129C 3'UTR 0.12 TCGA-18-5592-01 19 20807714 20807714 C A ZNF626 Missense_Mutation p.K323N 0.24 tolerated(1) benign(0.04) TCGA-18-5592-01 19 22256295 22256295 T G ZNF257 Missense_Mutation p.L52R 0.21 deleterious(0) possibly_damaging(0.828) TCGA-18-5592-01 19 23159230 23159230 C G ZNF728 Missense_Mutation p.K303N 0.55 deleterious(0) probably_damaging(0.957) TCGA-18-5592-01 19 23837199 23837199 C G ZNF675 Missense_Mutation p.R179T 0.31 deleterious(0.02) benign(0.022) TCGA-18-5592-01 19 34832958 34832958 G A KIAA0355 Missense_Mutation p.A707T 0.48 tolerated_low_confidence(0.43) benign(0.005) TCGA-18-5592-01 19 36245219 36245219 A T LIN37 Missense_Mutation p.R220W 0.07 deleterious(0) probably_damaging(0.998) TCGA-18-5592-01 19 36351927 36351927 G C KIRREL2 Missense_Mutation p.G349R 0.29 deleterious(0.01) probably_damaging(0.959) TCGA-18-5592-01 19 36940468 36940468 C G ZNF566 Missense_Mutation p.G224A 0.26 deleterious(0.03) probably_damaging(1) TCGA-18-5592-01 19 37130357 37130357 C T ZNF461 Missense_Mutation p.G297D 0.10 deleterious(0.02) probably_damaging(1) TCGA-18-5592-01 19 37130358 37130358 C G ZNF461 Missense_Mutation p.G297R 0.09 deleterious(0) probably_damaging(1) TCGA-18-5592-01 19 39669214 39669214 A T PAK4 Nonsense_Mutation p.R591* 0.47 TCGA-18-5592-01 19 39989570 39989570 G - DLL3 5'Flank 0.26 TCGA-18-5592-01 19 40903374 40903374 C A PRX Silent p.V295V 0.44 TCGA-18-5592-01 19 41281517 41281517 G T MIA Missense_Mutation p.G24C 0.51 deleterious(0.01) benign(0.04) TCGA-18-5592-01 19 42085842 42085842 G A CEACAM21 Silent p.T187T 0.29 TCGA-18-5592-01 19 42259396 42259396 G A CEACAM6 5'UTR 0.41 TCGA-18-5592-01 19 42911519 42911519 C A LIPE Silent p.V648V 0.32 TCGA-18-5592-01 19 44891866 44891866 G T ZNF285 Missense_Mutation p.H181N 0.43 tolerated(1) benign(0) TCGA-18-5592-01 19 45176160 45176160 C G CEACAM19 Missense_Mutation p.D116E 0.06 deleterious(0) probably_damaging(1) TCGA-18-5592-01 19 46825125 46825125 G T HIF3A Missense_Mutation p.D413Y 0.46 deleterious(0) probably_damaging(0.926) TCGA-18-5592-01 19 46825126 46825126 A T HIF3A Missense_Mutation p.D413V 0.46 tolerated(0.07) possibly_damaging(0.821) TCGA-18-5592-01 19 47278759 47278759 C - SLC1A5 3'UTR 0.18 TCGA-18-5592-01 19 4891305 4891305 C G ARRDC5 Missense_Mutation p.R261P 0.16 tolerated(1) benign(0.001) TCGA-18-5592-01 19 49424479 49424479 G C NUCB1 Silent p.R357R 0.25 TCGA-18-5592-01 19 49468815 49468815 C G FTL Silent p.V17V 0.31 TCGA-18-5592-01 19 49934604 49934604 C T SLC17A7 Missense_Mutation p.A418T 0.30 deleterious(0.03) benign(0.227) TCGA-18-5592-01 19 50796843 50796843 C T MYH14 Missense_Mutation p.R1790C 0.14 deleterious(0) probably_damaging(1) TCGA-18-5592-01 19 51875032 51875032 C T NKG7 Silent p.%3D 0.28 TCGA-18-5592-01 19 5212481 5212481 C T PTPRS Missense_Mutation p.E1546K 0.60 deleterious(0) possibly_damaging(0.823) TCGA-18-5592-01 19 52905251 52905251 A T ZNF528 5'UTR 0.21 TCGA-18-5592-01 19 53572826 53572826 C - ZNF160 Frame_Shift_Del p.V321Sfs*36 0.36 TCGA-18-5592-01 19 53770644 53770644 C T VN1R4 Missense_Mutation p.G92E 0.42 deleterious(0) probably_damaging(0.993) TCGA-18-5592-01 19 54782142 54782142 G A LILRB2 Silent p.P410P 0.24 TCGA-18-5592-01 19 54867018 54867018 C A LAIR1 Silent p.L241L 0.48 TCGA-18-5592-01 19 54872558 54872558 G T LAIR1 Missense_Mutation p.S110Y 0.22 deleterious(0) probably_damaging(0.99) TCGA-18-5592-01 19 55086421 55086421 G A LILRA2 Silent p.S192S 0.18 TCGA-18-5592-01 19 55399446 55399446 C A FCAR Missense_Mutation p.T145K 0.51 tolerated(0.51) benign(0.03) TCGA-18-5592-01 19 57176042 57176042 G T ZNF835 Missense_Mutation p.F175L 0.40 deleterious(0) probably_damaging(0.973) TCGA-18-5592-01 19 57326041 57326041 G T PEG3 Missense_Mutation p.Q1257K 0.39 tolerated(0.68) benign(0.009) TCGA-18-5592-01 19 57326467 57326467 C A PEG3 Missense_Mutation p.G1115C 0.47 deleterious(0.05) probably_damaging(0.999) TCGA-18-5592-01 19 6919585 6919585 T A EMR1 Missense_Mutation p.F483I 0.29 deleterious(0) possibly_damaging(0.703) TCGA-18-5592-01 19 7830087 7830087 C T CLEC4M Silent p.G49G 0.38 TCGA-18-5592-01 19 7830088 7830088 G C CLEC4M Missense_Mutation p.A50P 0.37 tolerated(1) benign(0) TCGA-18-5592-01 19 9067600 9067600 G C MUC16 Missense_Mutation p.P6616A 0.45 unknown(0) TCGA-18-5592-01 19 9071212 9071212 T A MUC16 Missense_Mutation p.T5412S 0.49 unknown(0) TCGA-18-5592-01 1 110292980 110292980 G A EPS8L3 3'UTR 0.67 TCGA-18-5592-01 1 111825625 111825625 A T CHIAP2 RNA 0.50 TCGA-18-5592-01 1 113471975 113471975 C G SLC16A1 Splice_Site 0.22 TCGA-18-5592-01 1 115113346 115113346 C A BCAS2 Missense_Mutation p.A149S 0.40 tolerated(0.25) benign(0.004) TCGA-18-5592-01 1 115401310 115401310 G T SYCP1 Missense_Mutation p.R145L 0.64 deleterious(0) probably_damaging(1) TCGA-18-5592-01 1 116676076 116676076 G T MAB21L3 3'UTR 0.60 TCGA-18-5592-01 1 145509204 145509204 G T RBM8A Missense_Mutation p.R173L 0.61 deleterious_low_confidence(0.03) unknown(0) TCGA-18-5592-01 1 149895540 149895540 C A SF3B4 Missense_Mutation p.R390L 0.68 deleterious_low_confidence(0.04) unknown(0) TCGA-18-5592-01 1 152279999 152279999 A T FLG Missense_Mutation p.S2455T 0.22 probably_damaging(0.958) TCGA-18-5592-01 1 156206080 156206080 C T PMF1 Intron 0.18 TCGA-18-5592-01 1 156647042 156647042 C T NES Missense_Mutation p.M5I 0.18 deleterious(0.02) benign(0.008) TCGA-18-5592-01 1 156846302 156846302 G A NTRK1 Silent p.E581E 0.58 TCGA-18-5592-01 1 158549599 158549599 C A OR10X1 Missense_Mutation p.V31F 0.23 deleterious(0.05) benign(0.005) TCGA-18-5592-01 1 159002392 159002392 C A IFI16 Missense_Mutation p.P414T 0.05 tolerated(0.76) probably_damaging(0.954) TCGA-18-5592-01 1 161046274 161046274 G A PVRL4 Intron 0.16 TCGA-18-5592-01 1 172222761 172222761 G A DNM3 Missense_Mutation p.D570N 0.10 deleterious(0.02) benign(0.216) TCGA-18-5592-01 1 175325459 175325459 A C TNR Silent p.S1038S 0.25 TCGA-18-5592-01 1 177250759 177250759 C T BRINP2 3'UTR 0.58 TCGA-18-5592-01 1 190067167 190067167 G C BRINP3 Missense_Mutation p.T761R 0.20 tolerated(0.07) possibly_damaging(0.689) TCGA-18-5592-01 1 197398609 197398609 C A CRB1 Missense_Mutation p.H903N 0.64 deleterious(0.02) benign(0.002) TCGA-18-5592-01 1 206634438 206634438 G A SRGAP2 Silent p.Q877Q 0.18 TCGA-18-5592-01 1 215759950 215759950 G A KCTD3 Missense_Mutation p.D247N 0.20 tolerated(0.07) probably_damaging(0.998) TCGA-18-5592-01 1 216246232 216246232 T G USH2A Silent p.A1952A 0.60 TCGA-18-5592-01 1 227348261 227348261 G C CDC42BPA Missense_Mutation p.L226V 0.04 deleterious(0.04) possibly_damaging(0.648) TCGA-18-5592-01 1 233515049 233515049 G T MLK4 Missense_Mutation p.R766L 0.59 deleterious(0.02) benign(0.012) TCGA-18-5592-01 1 237550599 237550599 G A RYR2 Missense_Mutation p.G199S 0.25 possibly_damaging(0.615) TCGA-18-5592-01 1 240421269 240421269 A G FMN2 Missense_Mutation p.R1364G 0.53 probably_damaging(1) TCGA-18-5592-01 1 247752240 247752240 G T OR2G2 Silent p.V193V 0.26 TCGA-18-5592-01 1 247875180 247875180 C T OR6F1 Missense_Mutation p.R293H 0.59 deleterious(0.01) benign(0.181) TCGA-18-5592-01 1 248343511 248343511 G T OR2M2 Missense_Mutation p.C75F 0.13 tolerated(0.07) benign(0.111) TCGA-18-5592-01 1 248437053 248437053 G T OR2T33 Missense_Mutation p.H22N 0.23 tolerated(0.09) benign(0.439) TCGA-18-5592-01 1 248458858 248458858 G A OR2T12 Missense_Mutation p.P8L 0.57 tolerated(0.05) benign(0) TCGA-18-5592-01 1 248845103 248845103 C A OR14I1 Missense_Mutation p.R168I 0.21 deleterious(0.02) possibly_damaging(0.863) TCGA-18-5592-01 1 3334552 3334552 A G PRDM16 Missense_Mutation p.Y951C 0.56 deleterious(0) probably_damaging(0.95) TCGA-18-5592-01 1 38409499 38409499 C A INPP5B Silent p.V73V 0.66 TCGA-18-5592-01 1 43665131 43665131 C T WDR65 Missense_Mutation p.T500M 0.65 tolerated(0.21) benign(0.422) TCGA-18-5592-01 20 1161498 1161498 C A TMEM74B Missense_Mutation p.R255S 0.30 deleterious_low_confidence(0.04) benign(0) TCGA-18-5592-01 20 17462428 17462428 G A PCSK2 Missense_Mutation p.D544N 0.12 tolerated(0.24) probably_damaging(1) TCGA-18-5592-01 20 17594661 17594661 G C RRBP1 3'UTR 0.27 TCGA-18-5592-01 20 21376578 21376578 C T NKX2-4 Missense_Mutation p.A346T 0.44 deleterious(0.02) possibly_damaging(0.499) TCGA-18-5592-01 20 23016993 23016993 C A SSTR4 Silent p.T291T 0.29 TCGA-18-5592-01 20 23967093 23967093 G T GGTLC1 Silent p.A52A 0.38 TCGA-18-5592-01 20 23967142 23967142 C - GGTLC1 Frame_Shift_Del p.G36Afs*116 0.33 TCGA-18-5592-01 20 31805393 31805393 G A BPIFA3 Silent p.L17L 0.43 TCGA-18-5592-01 20 35422806 35422806 C A SOGA1 Missense_Mutation p.A1227S 0.31 tolerated(1) benign(0.002) TCGA-18-5592-01 20 36870069 36870069 C T KIAA1755 Missense_Mutation p.S155N 0.34 tolerated(0.54) benign(0.001) TCGA-18-5592-01 20 42355395 42355395 G A GTSF1L 5'UTR 0.38 TCGA-18-5592-01 20 44530927 44530927 C A PLTP Missense_Mutation p.R385L 0.32 tolerated(0.76) benign(0.036) TCGA-18-5592-01 20 47836040 47836040 G C DDX27 Missense_Mutation p.V50L 0.26 tolerated(0.72) benign(0.001) TCGA-18-5592-01 20 62073850 62073850 C A KCNQ2 Missense_Mutation p.C242F 0.26 deleterious(0) possibly_damaging(0.846) TCGA-18-5592-01 20 9546901 9546901 G A PAK7 Missense_Mutation p.P374L 0.31 deleterious(0) probably_damaging(0.998) TCGA-18-5592-01 21 10944770 10944770 G A TPTE Missense_Mutation p.S155F 0.09 deleterious(0) probably_damaging(0.99) TCGA-18-5592-01 21 22696781 22696781 G T NCAM2 Missense_Mutation p.R233M 0.31 tolerated(0.11) benign(0.015) TCGA-18-5592-01 21 46309964 46309964 A G ITGB2 Missense_Mutation p.I529T 0.41 deleterious(0.04) possibly_damaging(0.474) TCGA-18-5592-01 22 19119619 19119619 C A TSSK2 Missense_Mutation p.P236Q 0.36 deleterious(0) probably_damaging(0.986) TCGA-18-5592-01 22 20102130 20102130 C G TRMT2A Silent p.L400L 0.30 TCGA-18-5592-01 22 24891228 24891228 A T UPB1 5'UTR 0.39 TCGA-18-5592-01 22 24891229 24891229 G A UPB1 5'UTR 0.39 TCGA-18-5592-01 22 34157444 34157444 C G LARGE Missense_Mutation p.G7A 0.40 tolerated_low_confidence(0.35) benign(0.214) TCGA-18-5592-01 2 112539964 112539964 A T ANAPC1 Silent p.S1728S 0.10 TCGA-18-5592-01 2 133014588 133014588 C A MIR663B RNA 0.18 TCGA-18-5592-01 2 133542370 133542370 C T NCKAP5 Missense_Mutation p.D672N 0.42 deleterious(0) probably_damaging(1) TCGA-18-5592-01 2 136873260 136873260 G A CXCR4 Silent p.L84L 0.06 TCGA-18-5592-01 2 152487332 152487332 C T NEB Missense_Mutation p.R3207H 0.14 benign(0.059) TCGA-18-5592-01 2 166744965 166744965 C T TTC21B Missense_Mutation p.E1095K 0.06 deleterious(0) probably_damaging(0.928) TCGA-18-5592-01 2 170591838 170591838 G T KLHL23 Missense_Mutation p.R105I 0.39 tolerated(0.16) possibly_damaging(0.617) TCGA-18-5592-01 2 172967087 172967087 G T DLX2 Silent p.T60T 0.47 TCGA-18-5592-01 2 178098815 178098815 T C NFE2L2 Missense_Mutation p.D77G 0.40 deleterious(0) probably_damaging(1) TCGA-18-5592-01 2 17912378 17912378 C G SMC6 Missense_Mutation p.E170D 0.34 tolerated(0.1) probably_damaging(0.936) TCGA-18-5592-01 2 179441890 179441890 T A TTN Missense_Mutation p.T23058S 0.40 TCGA-18-5592-01 2 179575470 179575470 C T TTN Missense_Mutation p.A9452T 0.35 TCGA-18-5592-01 2 179598145 179598145 G A TTN Missense_Mutation p.P5292L 0.36 TCGA-18-5592-01 2 179656920 179656920 C A TTN Missense_Mutation p.R514I 0.43 TCGA-18-5592-01 2 182388249 182388249 A G ITGA4 Missense_Mutation p.H720R 0.41 tolerated(0.65) benign(0.015) TCGA-18-5592-01 2 185802960 185802960 A T ZNF804A Missense_Mutation p.N946I 0.40 tolerated(0.19) benign(0.07) TCGA-18-5592-01 2 189857616 189857616 C A COL3A1 Missense_Mutation p.P334T 0.35 unknown(0) TCGA-18-5592-01 2 19553399 19553399 C G OSR1 Silent p.T56T 0.39 TCGA-18-5592-01 2 196664156 196664156 C T DNAH7 Missense_Mutation p.G3406E 0.40 deleterious(0.01) probably_damaging(0.982) TCGA-18-5592-01 2 196825095 196825095 G T DNAH7 Missense_Mutation p.T927K 0.37 deleterious(0) probably_damaging(0.982) TCGA-18-5592-01 2 197298160 197298160 T A HECW2 5'UTR 0.29 TCGA-18-5592-01 2 197298161 197298161 C G HECW2 5'UTR 0.30 TCGA-18-5592-01 2 202899509 202899509 G T FZD7 Missense_Mutation p.G47C 0.39 deleterious(0) probably_damaging(0.99) TCGA-18-5592-01 2 211471664 211471664 G T CPS1 Missense_Mutation p.G737C 0.38 deleterious(0) probably_damaging(1) TCGA-18-5592-01 2 211512690 211512690 A C CPS1 Missense_Mutation p.Q1088P 0.31 tolerated(0.28) possibly_damaging(0.799) TCGA-18-5592-01 2 212989506 212989506 C T ERBB4 Missense_Mutation p.E69K 0.37 tolerated(0.69) benign(0.15) TCGA-18-5592-01 2 225367790 225367790 C T CUL3 Splice_Site p.X460_splice 0.40 TCGA-18-5592-01 2 227895204 227895204 C T COL4A4 Missense_Mutation p.G1310R 0.43 unknown(0) TCGA-18-5592-01 2 227942619 227942619 C A COL4A4 Missense_Mutation p.G660C 0.23 probably_damaging(0.995) TCGA-18-5592-01 2 233410280 233410280 C A CHRNG Silent p.R470R 0.39 TCGA-18-5592-01 2 233546384 233546384 C G EFHD1 Silent p.L225L 0.41 TCGA-18-5592-01 2 234775374 234775374 A G MSL3P1 RNA 0.38 TCGA-18-5592-01 2 39222461 39222461 A G SOS1 Missense_Mutation p.M1050T 0.45 tolerated(0.13) benign(0.096) TCGA-18-5592-01 2 44981257 44981257 G T CAMKMT Missense_Mutation p.R254S 0.05 tolerated(0.91) benign(0.013) TCGA-18-5592-01 2 50149369 50149369 C A NRXN1 Missense_Mutation p.G1453C 0.32 tolerated_low_confidence(0.05) possibly_damaging(0.848) TCGA-18-5592-01 2 74146658 74146658 T A ACTG2 Missense_Mutation p.Y363N 0.43 deleterious_low_confidence(0) probably_damaging(1) TCGA-18-5592-01 2 74881627 74881627 A T SEMA4F Nonsense_Mutation p.R42* 0.35 TCGA-18-5592-01 2 79971647 79971647 T A CTNNA2 Silent p.A79A 0.30 TCGA-18-5592-01 2 89442273 89442273 C A IGKV3-20 Missense_Mutation p.R44S 0.38 deleterious(0.01) benign(0.047) TCGA-18-5592-01 2 90260137 90260137 C - IGKV1D-8 Frame_Shift_Del p.P81Hfs*? 0.34 TCGA-18-5592-01 2 98409296 98409296 C T TMEM131 Missense_Mutation p.E1233K 0.08 tolerated_low_confidence(0.05) benign(0.129) TCGA-18-5592-01 3 100962390 100962390 G T IMPG2 Missense_Mutation p.Q929K 0.58 deleterious(0) probably_damaging(0.949) TCGA-18-5592-01 3 108183497 108183497 A G MYH15 Silent p.H593H 0.74 TCGA-18-5592-01 3 112357210 112357210 G T CCDC80 Missense_Mutation p.P515T 0.14 deleterious(0.01) possibly_damaging(0.879) TCGA-18-5592-01 3 122496727 122496727 C A HSPBAP1 Nonsense_Mutation p.E31* 0.32 TCGA-18-5592-01 3 123688018 123688018 C A ROPN1 Missense_Mutation p.R208M 0.26 deleterious(0) benign(0.297) TCGA-18-5592-01 3 124237289 124237289 C - KALRN Frame_Shift_Del p.P1658Lfs*20 0.16 TCGA-18-5592-01 3 124449311 124449311 G T UMPS 5'UTR 0.25 TCGA-18-5592-01 3 127540634 127540634 T A MGLL Missense_Mutation p.T20S 0.79 tolerated(0.78) benign(0.03) TCGA-18-5592-01 3 12856708 12856708 A T CAND2 Missense_Mutation p.I359F 0.53 deleterious(0) benign(0.021) TCGA-18-5592-01 3 130424510 130424510 C T PIK3R4 Missense_Mutation p.E943K 0.18 deleterious(0) probably_damaging(0.917) TCGA-18-5592-01 3 13659716 13659716 G T FBLN2 Missense_Mutation p.V624L 0.69 tolerated(0.09) probably_damaging(0.998) TCGA-18-5592-01 3 142511727 142511727 G T TRPC1 Missense_Mutation p.G500V 0.37 tolerated(0.05) probably_damaging(0.981) TCGA-18-5592-01 3 149290745 149290745 C G WWTR1 Silent p.A158A 0.04 TCGA-18-5592-01 3 150881801 150881801 C T MED12L Missense_Mutation p.P410L 0.31 deleterious(0.03) probably_damaging(0.989) TCGA-18-5592-01 3 151100489 151100489 G A MED12L Missense_Mutation p.A1511T 0.19 tolerated(0.15) possibly_damaging(0.85) TCGA-18-5592-01 3 167045904 167045904 C A ZBBX Missense_Mutation p.V230L 0.42 deleterious(0.01) benign(0.319) TCGA-18-5592-01 3 17053469 17053469 C G PLCL2 Missense_Mutation p.H751Q 0.69 deleterious(0) probably_damaging(0.995) TCGA-18-5592-01 3 175184863 175184863 G C NAALADL2 Missense_Mutation p.R475P 0.31 deleterious(0.01) possibly_damaging(0.514) TCGA-18-5592-01 3 183904636 183904636 C T ABCF3 Nonsense_Mutation p.Q92* 0.20 TCGA-18-5592-01 3 186917901 186917901 G C RTP1 3'UTR 0.20 TCGA-18-5592-01 3 190026066 190026066 T G CLDN1 Nonstop_Mutation p.*212Cext*10 0.11 TCGA-18-5592-01 3 191074882 191074882 C G CCDC50 Missense_Mutation p.R19G 0.17 deleterious(0) probably_damaging(0.996) TCGA-18-5592-01 3 61975462 61975462 A C PTPRG Missense_Mutation p.K118N 0.22 deleterious(0.04) probably_damaging(0.966) TCGA-18-5592-01 4 109782124 109782124 C - COL25A1 Frame_Shift_Del p.D401Ifs*29 0.44 TCGA-18-5592-01 4 155156792 155156792 C A DCHS2 Silent p.V2549V 0.70 TCGA-18-5592-01 4 174450308 174450308 C A HAND2 Missense_Mutation p.G45C 0.90 deleterious(0) possibly_damaging(0.75) TCGA-18-5592-01 4 178231057 178231057 G T NEIL3 5'UTR 0.67 TCGA-18-5592-01 4 188924884 188924884 A G ZFP42 Missense_Mutation p.E308G 0.66 tolerated_low_confidence(0.17) benign(0.001) TCGA-18-5592-01 4 39839791 39839791 C T PDS5A Missense_Mutation p.S1232N 0.10 tolerated_low_confidence(0.07) benign(0.096) TCGA-18-5592-01 4 44177267 44177267 C A KCTD8 Missense_Mutation p.R321L 0.61 deleterious(0) possibly_damaging(0.605) TCGA-18-5592-01 4 53492340 53492340 G A USP46 Missense_Mutation p.L136F 0.07 deleterious(0.01) probably_damaging(0.948) TCGA-18-5592-01 4 57237718 57237718 A T AASDH Missense_Mutation p.S254T 0.07 tolerated(0.47) benign(0.052) TCGA-18-5592-01 4 66467780 66467780 C - EPHA5 Frame_Shift_Del p.R164Efs*30 0.42 TCGA-18-5592-01 5 143853480 143853480 G T KCTD16 Missense_Mutation p.D364Y 0.61 deleterious(0.01) probably_damaging(0.972) TCGA-18-5592-01 5 160047944 160047944 G T ATP10B Missense_Mutation p.P609H 0.62 tolerated(0.07) probably_damaging(0.93) TCGA-18-5592-01 5 160757955 160757955 G T GABRB2 Missense_Mutation p.Q338K 0.66 tolerated(0.27) benign(0.145) TCGA-18-5592-01 5 179229125 179229125 C G MGAT4B 5'UTR 0.23 TCGA-18-5592-01 5 24505315 24505315 G T CDH10 Missense_Mutation p.N433K 0.44 deleterious(0.02) benign(0.247) TCGA-18-5592-01 5 24537743 24537743 T C CDH10 Missense_Mutation p.Y91C 0.92 deleterious(0) probably_damaging(0.998) TCGA-18-5592-01 5 32090943 32090943 G A PDZD2 Silent p.K2463K 0.03 TCGA-18-5592-01 5 75913823 75913823 G T F2RL2 Missense_Mutation p.L237I 0.58 tolerated(0.18) benign(0.338) TCGA-18-5592-01 5 7875392 7875392 C A MTRR Missense_Mutation p.T129N 0.03 deleterious(0.01) probably_damaging(0.979) TCGA-18-5592-01 5 90074700 90074700 C T GPR98 Missense_Mutation p.R4290C 0.60 probably_damaging(0.965) TCGA-18-5592-01 6 10529727 10529727 T - GCNT2 Frame_Shift_Del p.L197* 0.27 TCGA-18-5592-01 6 110059537 110059537 G T FIG4 Missense_Mutation p.G219V 0.24 tolerated(0.05) possibly_damaging(0.612) TCGA-18-5592-01 6 118556697 118556697 A G SLC35F1 Silent p.L125L 0.41 TCGA-18-5592-01 6 129748927 129748927 G T LAMA2 Missense_Mutation p.D1966Y 0.68 deleterious(0.02) benign(0.281) TCGA-18-5592-01 6 133065441 133065441 A G VNN2 Nonstop_Mutation p.*521Qext*28 0.72 TCGA-18-5592-01 6 136589379 136589379 C A BCLAF1 Missense_Mutation p.R773I 0.25 deleterious(0.04) possibly_damaging(0.506) TCGA-18-5592-01 6 152647160 152647160 A T SYNE1 Nonsense_Mutation p.L5124* 0.68 TCGA-18-5592-01 6 158094168 158094168 A T ZDHHC14 3'UTR 0.85 TCGA-18-5592-01 6 26217634 26217634 C A HIST1H2AE 3'UTR 0.28 TCGA-18-5592-01 6 49578736 49578736 C T RHAG Splice_Site p.X356_splice 0.30 TCGA-18-5592-01 6 52622742 52622742 C T GSTA2 Missense_Mutation p.A2T 0.44 tolerated(0.13) benign(0.191) TCGA-18-5592-01 6 56457026 56457026 A C DST Missense_Mutation p.I1663S 0.35 possibly_damaging(0.795) TCGA-18-5592-01 6 56504519 56504519 A T DST Nonsense_Mutation p.L354* 0.40 TCGA-18-5592-01 6 64394311 64394311 G T PHF3 Missense_Mutation p.D230Y 0.35 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-18-5592-01 6 85446610 85446610 T A TBX18 Missense_Mutation p.K539N 0.41 deleterious(0) benign(0.382) TCGA-18-5592-01 6 91226264 91226264 C T MAP3K7 Missense_Mutation p.E593K 0.35 deleterious(0.04) benign(0.069) TCGA-18-5592-01 6 97246999 97246999 C A GPR63 Missense_Mutation p.W203C 0.43 deleterious(0) probably_damaging(0.984) TCGA-18-5592-01 6 97561847 97561847 T C KLHL32 Silent p.Y272Y 0.44 TCGA-18-5592-01 7 100607765 100607765 G T MUC3A Missense_Mutation p.D638Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-18-5592-01 7 103206680 103206680 C T RELN Missense_Mutation p.E1643K 0.08 tolerated(0.39) probably_damaging(0.993) TCGA-18-5592-01 7 107342503 107342503 G A SLC26A4 Splice_Site p.X678_splice 0.85 TCGA-18-5592-01 7 148484186 148484186 G A CUL1 Missense_Mutation p.E485K 0.75 deleterious(0) probably_damaging(0.991) TCGA-18-5592-01 7 37907339 37907339 T C NME8 Silent p.S219S 0.83 TCGA-18-5592-01 7 42011972 42011972 G A GLI3 Silent p.C689C 0.03 TCGA-18-5592-01 7 5103389 5103389 A T RBAK Missense_Mutation p.Q101L 0.80 deleterious(0.02) benign(0.039) TCGA-18-5592-01 7 63726316 63726316 G C ZNF679 Missense_Mutation p.G102A 0.16 tolerated(0.06) possibly_damaging(0.48) TCGA-18-5592-01 7 70853220 70853220 G T WBSCR17 Splice_Site p.X141_splice 0.50 TCGA-18-5592-01 7 7612910 7612910 A T MIOS Missense_Mutation p.K268N 0.84 deleterious(0.01) probably_damaging(0.979) TCGA-18-5592-01 7 87778310 87778324 GTGTGCCGAGAAGCA - ADAM22 In_Frame_Del p.C503_V507del 0.42 TCGA-18-5592-01 7 87912145 87912145 A G STEAP4 Silent p.A265A 0.85 TCGA-18-5592-01 7 95751027 95751027 C A SLC25A13 Missense_Mutation p.G595V 0.78 deleterious(0) probably_damaging(0.993) TCGA-18-5592-01 8 108913174 108913174 A T RSPO2 3'UTR 0.35 TCGA-18-5592-01 8 113326668 113326668 C A CSMD3 Missense_Mutation p.Q2513H 0.34 deleterious(0.02) benign(0.315) TCGA-18-5592-01 8 113649188 113649188 A G CSMD3 Silent p.G1191G 0.40 TCGA-18-5592-01 8 113933931 113933931 C A CSMD3 Missense_Mutation p.G520C 0.38 deleterious(0) probably_damaging(0.997) TCGA-18-5592-01 8 117859849 117859849 T C RAD21 Missense_Mutation p.K596E 0.04 deleterious(0) probably_damaging(0.995) TCGA-18-5592-01 8 133041424 133041424 C A OC90 Missense_Mutation p.C345F 0.24 deleterious(0.01) probably_damaging(0.946) TCGA-18-5592-01 8 133637629 133637629 T C LRRC6 Missense_Mutation p.N242S 0.43 tolerated(0.28) benign(0.002) TCGA-18-5592-01 8 139164776 139164776 G T FAM135B Missense_Mutation p.L648M 0.37 tolerated(0.09) possibly_damaging(0.717) TCGA-18-5592-01 8 139658919 139658919 C A COL22A1 Missense_Mutation p.A1152S 0.31 unknown(0) TCGA-18-5592-01 8 139697541 139697541 T A COL22A1 Missense_Mutation p.E959D 0.38 unknown(0) TCGA-18-5592-01 8 145002096 145002096 C T PLEC Missense_Mutation p.E1246K 0.45 unknown(0) TCGA-18-5592-01 8 23702537 23702537 C G STC1 Missense_Mutation p.V164L 0.63 tolerated(0.86) benign(0.001) TCGA-18-5592-01 8 26238705 26238705 C T BNIP3L 5'Flank 0.77 TCGA-18-5592-01 8 41806877 41806877 G A KAT6A Missense_Mutation p.P535S 0.37 benign(0.002) TCGA-18-5592-01 8 43155765 43155765 A T RNU6-104P 5'Flank 0.45 TCGA-18-5592-01 8 56015461 56015461 T A XKR4 Missense_Mutation p.L138Q 0.34 tolerated(0.08) probably_damaging(0.999) TCGA-18-5592-01 8 56435884 56435884 G T XKR4 Missense_Mutation p.A351S 0.38 deleterious(0.04) probably_damaging(0.994) TCGA-18-5592-01 8 70964201 70964201 A T PRDM14 3'UTR 0.62 TCGA-18-5592-01 8 70981880 70981880 C A PRDM14 Silent p.R72R 0.54 TCGA-18-5592-01 8 9413685 9413685 G T TNKS Missense_Mutation p.R79L 0.67 deleterious_low_confidence(0.01) unknown(0) TCGA-18-5592-01 8 99560267 99560267 C T STK3 Missense_Mutation p.M385I 0.42 tolerated(0.34) benign(0) TCGA-18-5592-01 9 114304857 114304857 G C ZNF483 Missense_Mutation p.E548Q 0.19 deleterious(0) possibly_damaging(0.584) TCGA-18-5592-01 9 123688260 123688260 C G TRAF1 Missense_Mutation p.E32Q 0.33 deleterious(0.01) possibly_damaging(0.588) TCGA-18-5592-01 9 137320990 137320990 G T RXRA Missense_Mutation p.R316L 0.33 deleterious(0) probably_damaging(0.999) TCGA-18-5592-01 9 139404224 139404224 C T NOTCH1 Missense_Mutation p.G977E 0.41 deleterious(0) probably_damaging(1) TCGA-18-5592-01 9 139404225 139404225 C A NOTCH1 Missense_Mutation p.G977W 0.41 deleterious(0) probably_damaging(1) TCGA-18-5592-01 9 14776177 14776177 C A FREM1 Silent p.R1489R 0.67 TCGA-18-5592-01 9 71395951 71395951 C T FAM122A 3'UTR 0.33 TCGA-18-5592-01 9 71503911 71503911 T C PIP5K1B Silent p.S111S 0.40 TCGA-18-5592-01 9 79938034 79938034 G C VPS13A Missense_Mutation p.R1961P 0.40 deleterious(0) possibly_damaging(0.796) TCGA-18-5592-01 X 100615711 100615711 T C BTK Silent p.A207A 0.82 TCGA-18-5592-01 X 103267886 103267886 C G H2BFWT Missense_Mutation p.R116P 0.82 deleterious(0) probably_damaging(0.992) TCGA-18-5592-01 X 134989943 134989943 C - SAGE1 Frame_Shift_Del p.P368Qfs*14 0.47 TCGA-18-5592-01 X 153674214 153674214 G T FAM50A Missense_Mutation p.R84L 0.67 deleterious(0) possibly_damaging(0.629) TCGA-18-5592-01 X 41204467 41204467 G T DDX3X Missense_Mutation p.D354Y 0.80 deleterious(0) probably_damaging(0.995) TCGA-18-5592-01 X 47867852 47867852 G T SPACA5 Missense_Mutation p.G75V 0.36 deleterious(0) probably_damaging(1) TCGA-18-5592-01 X 88008875 88008875 C A CPXCR1 Missense_Mutation p.H154N 0.09 tolerated(0.2) benign(0.002) TCGA-18-5595-01 10 100481512 100481512 C T HPSE2 Silent p.L286L 0.46 TCGA-18-5595-01 10 104865481 104865481 C G NT5C2 Missense_Mutation p.G124A 0.39 deleterious(0) probably_damaging(0.998) TCGA-18-5595-01 10 115348129 115348129 G T HABP2 3'UTR 0.21 TCGA-18-5595-01 10 123658405 123658405 T C ATE1 Missense_Mutation p.Y298C 0.39 deleterious(0) probably_damaging(1) TCGA-18-5595-01 10 127824200 127824200 C A ADAM12 Silent p.R126R 0.09 TCGA-18-5595-01 10 27389215 27389215 C G ANKRD26 Missense_Mutation p.G14A 0.32 tolerated(0.16) benign(0.009) TCGA-18-5595-01 10 27389216 27389216 C A ANKRD26 Missense_Mutation p.G14C 0.32 deleterious(0.01) possibly_damaging(0.79) TCGA-18-5595-01 10 38345001 38345001 C T ZNF33A Missense_Mutation p.S650L 0.72 deleterious(0) probably_damaging(0.987) TCGA-18-5595-01 10 38666960 38666960 G A HSD17B7P2 RNA 0.67 TCGA-18-5595-01 10 49430397 49430397 C A FRMPD2 Missense_Mutation p.V472F 0.05 deleterious(0) probably_damaging(0.939) TCGA-18-5595-01 10 73574711 73574711 G C CDH23 Silent p.L1007L 0.25 TCGA-18-5595-01 10 73575039 73575039 G C CDH23 3'UTR 0.53 TCGA-18-5595-01 10 75276202 75276202 G T USP54 Missense_Mutation p.Q1328K 0.42 tolerated(0.12) benign(0.038) TCGA-18-5595-01 10 79011015 79011015 C T KCNMA1 Splice_Site p.X181_splice 0.20 TCGA-18-5595-01 10 81917738 81917738 G T ANXA11 Silent p.L440L 0.15 TCGA-18-5595-01 11 101778693 101778693 G T ANGPTL5 5'UTR 0.40 TCGA-18-5595-01 11 119243758 119243758 C T USP2 Missense_Mutation p.D145N 0.73 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-18-5595-01 11 26465322 26465322 G A ANO3 Silent p.E84E 0.22 TCGA-18-5595-01 11 30439182 30439182 T A MPPED2 Splice_Site p.X179_splice 0.25 TCGA-18-5595-01 11 399030 399030 C T PKP3 Silent p.L369L 0.13 TCGA-18-5595-01 11 47188385 47188385 C T ARFGAP2 Missense_Mutation p.E420K 0.42 deleterious(0.01) possibly_damaging(0.467) TCGA-18-5595-01 11 56954921 56954921 C A LRRC55 Silent p.R331R 0.09 TCGA-18-5595-01 11 56954922 56954922 T A LRRC55 Missense_Mutation p.W332R 0.09 deleterious(0) probably_damaging(0.998) TCGA-18-5595-01 11 57148124 57148124 G A PRG3 Silent p.L20L 0.27 TCGA-18-5595-01 11 58949569 58949569 C T DTX4 Missense_Mutation p.S190F 0.46 deleterious(0.03) benign(0.372) TCGA-18-5595-01 11 60638697 60638697 G T ZP1 Missense_Mutation p.G341V 0.21 deleterious(0) probably_damaging(0.996) TCGA-18-5595-01 11 60780938 60780938 G A CD6 Silent p.E398E 0.23 TCGA-18-5595-01 11 64083327 64083327 C A ESRRA Silent p.L387L 0.29 TCGA-18-5595-01 11 65270077 65270077 G A MALAT1 RNA 0.34 TCGA-18-5595-01 11 82876801 82876801 C T PCF11 Nonsense_Mutation p.Q288* 0.36 TCGA-18-5595-01 11 82877735 82877735 C T PCF11 Missense_Mutation p.S599F 0.31 deleterious(0) probably_damaging(0.999) TCGA-18-5595-01 12 109623543 109623543 G A ACACB Missense_Mutation p.E660K 0.23 deleterious(0) probably_damaging(0.999) TCGA-18-5595-01 12 116549243 116549243 G A MED13L Silent p.L129L 0.40 TCGA-18-5595-01 12 120582788 120582788 C T GCN1L1 Silent p.P1698P 0.31 TCGA-18-5595-01 12 122359392 122359392 G A WDR66 Missense_Mutation p.E61K 0.35 tolerated_low_confidence(0.22) benign(0) TCGA-18-5595-01 12 126068523 126068523 G A TMEM132B Missense_Mutation p.D469N 0.42 deleterious(0.03) probably_damaging(0.974) TCGA-18-5595-01 12 126138642 126138642 C T TMEM132B Nonsense_Mutation p.Q875* 0.34 TCGA-18-5595-01 12 13716391 13716391 G A GRIN2B Nonsense_Mutation p.Q1261* 0.48 TCGA-18-5595-01 12 19514590 19514590 G C PLEKHA5 Missense_Mutation p.M1186I 0.36 tolerated(0.29) benign(0.001) TCGA-18-5595-01 12 40618944 40618944 G A LRRK2 Missense_Mutation p.G4D 0.46 deleterious_low_confidence(0) possibly_damaging(0.536) TCGA-18-5595-01 12 48516643 48516643 G T PFKM Splice_Site p.X100_splice 0.14 TCGA-18-5595-01 12 49666851 49666851 G A TUBA1C Silent p.L397L 0.45 TCGA-18-5595-01 12 52774241 52774241 G A KRT84 Nonsense_Mutation p.Q444* 0.51 TCGA-18-5595-01 12 54674580 54674580 C T HNRNPA1 5'UTR 0.40 TCGA-18-5595-01 12 54739300 54739300 G T COPZ1 Splice_Site p.X106_splice 0.04 TCGA-18-5595-01 12 56743203 56743203 C T STAT2 Intron 0.36 TCGA-18-5595-01 12 57593029 57593029 G A LRP1 Silent p.L3237L 0.41 TCGA-18-5595-01 12 57861784 57861784 A G GLI1 Missense_Mutation p.Y362C 0.39 deleterious(0) probably_damaging(1) TCGA-18-5595-01 12 662805 662805 G C B4GALNT3 Missense_Mutation p.Q572H 0.32 tolerated(0.13) possibly_damaging(0.463) TCGA-18-5595-01 12 68051350 68051350 G T DYRK2 Missense_Mutation p.R221S 0.07 deleterious(0) probably_damaging(1) TCGA-18-5595-01 12 9225294 9225294 C T A2M Silent p.G1310G 0.09 TCGA-18-5595-01 13 108861930 108861930 C T LIG4 Missense_Mutation p.E563K 0.38 deleterious(0) probably_damaging(0.996) TCGA-18-5595-01 13 113798358 113798358 C G F10 Silent p.L232L 0.39 TCGA-18-5595-01 13 20413087 20413087 G A ZMYM5 Nonsense_Mutation p.Q209* 0.48 TCGA-18-5595-01 13 36124678 36124678 C G NBEA Nonsense_Mutation p.S2217* 0.46 TCGA-18-5595-01 13 50134125 50134125 G A RCBTB1 Missense_Mutation p.L125F 0.40 deleterious(0.03) benign(0.367) TCGA-18-5595-01 14 105639498 105639498 C T NUDT14 Missense_Mutation p.E177K 0.48 deleterious(0) possibly_damaging(0.762) TCGA-18-5595-01 14 106311923 106311923 A G IGHD Missense_Mutation p.I30T 0.39 tolerated(0.23) benign(0.053) TCGA-18-5595-01 14 21679519 21679519 G A HNRNPC Intron 0.47 TCGA-18-5595-01 14 23311854 23311854 G T MMP14 Missense_Mutation p.G206C 0.22 deleterious(0) probably_damaging(0.999) TCGA-18-5595-01 14 23855739 23855739 C T MYH6 Missense_Mutation p.D1582N 0.38 tolerated(0.05) benign(0.248) TCGA-18-5595-01 14 24526211 24526211 T A LRRC16B Missense_Mutation p.L347H 0.28 deleterious(0) probably_damaging(0.942) TCGA-18-5595-01 14 36780895 36780895 C G MBIP Missense_Mutation p.R225T 0.30 deleterious(0) probably_damaging(0.913) TCGA-18-5595-01 14 64494261 64494261 G A SYNE2 Missense_Mutation p.R2155K 0.13 probably_damaging(0.995) TCGA-18-5595-01 14 64494262 64494262 A T SYNE2 Missense_Mutation p.R2155S 0.13 probably_damaging(0.999) TCGA-18-5595-01 14 69726960 69726960 G A GALNT16 5'UTR 0.37 TCGA-18-5595-01 14 77845098 77845098 G C SAMD15 Missense_Mutation p.R446T 0.44 tolerated(0.69) benign(0) TCGA-18-5595-01 14 95053973 95053973 C T SERPINA5 Silent p.L92L 0.12 TCGA-18-5595-01 15 100345119 100345119 C T CTD-2054N24.2 5'Flank 0.31 TCGA-18-5595-01 15 34130533 34130533 G A RYR3 Missense_Mutation p.E4118K 0.42 benign(0.06) TCGA-18-5595-01 15 42053973 42053973 G A MGA Missense_Mutation p.D2479N 0.40 deleterious(0) probably_damaging(1) TCGA-18-5595-01 15 42742728 42742728 C A ZNF106 Missense_Mutation p.S558I 0.14 tolerated(0.15) benign(0.125) TCGA-18-5595-01 15 52486209 52486209 C T MYO5C Missense_Mutation p.D1707N 0.04 deleterious(0) probably_damaging(1) TCGA-18-5595-01 15 63054650 63054650 C G TLN2 Missense_Mutation p.I1653M 0.34 tolerated(0.22) benign(0.285) TCGA-18-5595-01 15 72643537 72643537 C T HEXA Nonsense_Mutation p.W203* 0.24 TCGA-18-5595-01 15 77471836 77471836 C T PEAK1 Silent p.K811K 0.43 TCGA-18-5595-01 15 77473983 77473983 C A PEAK1 Nonsense_Mutation p.E96* 0.44 TCGA-18-5595-01 15 90270543 90270543 G A WDR93 Missense_Mutation p.E346K 0.43 tolerated(0.34) benign(0.392) TCGA-18-5595-01 16 12061742 12061742 C T TNFRSF17 3'UTR 0.45 TCGA-18-5595-01 16 1394611 1394611 C T BAIAP3 Nonsense_Mutation p.Q592* 0.16 TCGA-18-5595-01 16 15978045 15978045 C T FOPNL Missense_Mutation p.E16K 0.33 deleterious(0) possibly_damaging(0.688) TCGA-18-5595-01 16 24909416 24909416 G A SLC5A11 Missense_Mutation p.R331H 0.39 deleterious(0) probably_damaging(0.998) TCGA-18-5595-01 16 27692776 27692776 G A KIAA0556 Missense_Mutation p.V289I 0.46 tolerated(1) benign(0.003) TCGA-18-5595-01 16 28917057 28917057 C T RABEP2 Missense_Mutation p.E487K 0.45 deleterious(0) probably_damaging(0.945) TCGA-18-5595-01 16 30365571 30365571 C T CD2BP2 Missense_Mutation p.E51K 0.38 deleterious(0) probably_damaging(0.955) TCGA-18-5595-01 16 50120226 50120226 G A HEATR3 Missense_Mutation p.A492T 0.39 tolerated(0.09) benign(0.075) TCGA-18-5595-01 16 54967521 54967521 G A IRX5 Silent p.T396T 0.39 TCGA-18-5595-01 16 57151476 57151476 G A CPNE2 Silent p.K168K 0.42 TCGA-18-5595-01 16 67201678 67201678 G A HSF4 Missense_Mutation p.E304K 0.55 tolerated(0.48) benign(0.004) TCGA-18-5595-01 16 70928358 70928358 G T HYDIN Missense_Mutation p.A3081E 0.30 benign(0.003) TCGA-18-5595-01 16 74330812 74330812 G C PSMD7 5'UTR 0.19 TCGA-18-5595-01 16 81725390 81725390 G A CMIP Missense_Mutation p.D467N 0.37 tolerated(0.11) possibly_damaging(0.702) TCGA-18-5595-01 16 89350994 89350994 C T ANKRD11 Silent p.L652L 0.39 TCGA-18-5595-01 17 1551211 1551211 C T RILP Missense_Mutation p.E288K 0.40 deleterious(0.01) probably_damaging(0.959) TCGA-18-5595-01 17 1961106 1961106 C T HIC1 Silent p.G393G 0.45 TCGA-18-5595-01 17 30326076 30326076 C T SUZ12 3'UTR 0.33 TCGA-18-5595-01 17 33738324 33738324 G C SLFN12 3'UTR 0.37 TCGA-18-5595-01 17 3427651 3427651 G A TRPV3 Silent p.I528I 0.52 TCGA-18-5595-01 17 44249538 44249538 T C KANSL1 5'UTR 0.07 TCGA-18-5595-01 17 48051337 48051337 C G DLX4 3'UTR 0.14 TCGA-18-5595-01 17 48545632 48545632 G A CHAD Silent p.N181N 0.38 TCGA-18-5595-01 17 4863020 4863020 T A SPAG7 Intron 0.18 TCGA-18-5595-01 17 5337084 5337084 C T C1QBP Missense_Mutation p.E161K 0.40 deleterious(0.02) benign(0.306) TCGA-18-5595-01 17 57951925 57951925 G A TUBD1 Silent p.L303L 0.23 TCGA-18-5595-01 17 7256248 7256248 G A KCTD11 5'UTR 0.41 TCGA-18-5595-01 17 74382930 74382930 C T SPHK1 Silent p.L226L 0.09 TCGA-18-5595-01 17 7700550 7700550 C T DNAH2 Silent p.I2640I 0.41 TCGA-18-5595-01 17 79082442 79082442 G A BAIAP2 Intron 0.44 TCGA-18-5595-01 17 79425950 79425950 G A RP11-1055B8.7 Missense_Mutation p.E1854K 0.19 benign(0.075) TCGA-18-5595-01 18 14479125 14479125 C T CXADRP3 RNA 0.44 TCGA-18-5595-01 18 19379821 19379821 G A MIB1 Silent p.L419L 0.39 TCGA-18-5595-01 18 32949403 32949403 G A ZNF396 Nonsense_Mutation p.Q262* 0.40 TCGA-18-5595-01 18 47906588 47906588 C T SKA1 Nonsense_Mutation p.Q61* 0.38 TCGA-18-5595-01 18 48241563 48241563 G C MAPK4 Missense_Mutation p.E221Q 0.42 deleterious(0) probably_damaging(0.998) TCGA-18-5595-01 18 74580737 74580737 C T ZNF236 Nonsense_Mutation p.Q152* 0.38 TCGA-18-5595-01 19 10600376 10600376 C G KEAP1 Missense_Mutation p.E493D 0.37 tolerated(0.2) benign(0.003) TCGA-18-5595-01 19 10602799 10602799 C T KEAP1 Missense_Mutation p.R260Q 0.40 deleterious(0) probably_damaging(1) TCGA-18-5595-01 19 15465863 15465863 C T AKAP8 Missense_Mutation p.E648K 0.33 tolerated_low_confidence(0.27) benign(0) TCGA-18-5595-01 19 17893894 17893894 G A FCHO1 Missense_Mutation p.G669E 0.13 tolerated(0.16) benign(0.05) TCGA-18-5595-01 19 19625897 19625897 C T TSSK6 Missense_Mutation p.D114N 0.33 tolerated(0.25) benign(0.005) TCGA-18-5595-01 19 19626086 19626086 C T TSSK6 Missense_Mutation p.D51N 0.46 tolerated(0.06) possibly_damaging(0.812) TCGA-18-5595-01 19 19737830 19737830 G A LPAR2 Silent p.L88L 0.39 TCGA-18-5595-01 19 34843609 34843609 C T KIAA0355 Missense_Mutation p.P988S 0.28 tolerated_low_confidence(0.35) benign(0.037) TCGA-18-5595-01 19 35504575 35504575 A G GRAMD1A Missense_Mutation p.S284G 0.09 tolerated(0.08) benign(0.146) TCGA-18-5595-01 19 35504576 35504576 G T GRAMD1A Missense_Mutation p.S284I 0.09 tolerated(0.07) benign(0.094) TCGA-18-5595-01 19 41066123 41066123 C T SPTBN4 Missense_Mutation p.A1910V 0.36 deleterious(0.02) probably_damaging(0.996) TCGA-18-5595-01 19 4318941 4318941 A T FSD1 Silent p.T344T 0.29 TCGA-18-5595-01 19 43428917 43428917 G A PSG7 3'UTR 0.45 TCGA-18-5595-01 19 52273056 52273056 C G FPR2 3'UTR 0.25 TCGA-18-5595-01 19 52941042 52941042 G T ZNF534 Missense_Mutation p.G123V 0.40 deleterious(0.03) probably_damaging(0.988) TCGA-18-5595-01 19 55107247 55107247 C T LILRA1 Missense_Mutation p.P269S 0.15 tolerated(0.49) benign(0.262) TCGA-18-5595-01 19 57672162 57672162 A C DUXA Missense_Mutation p.M10R 0.12 tolerated(0.21) benign(0.019) TCGA-18-5595-01 19 6752605 6752605 C T SH2D3A Silent p.%3D 0.56 TCGA-18-5595-01 19 7606545 7606545 C T PNPLA6 Silent p.T390T 0.56 TCGA-18-5595-01 19 9060544 9060544 G C MUC16 Missense_Mutation p.P8968A 0.44 unknown(0) TCGA-18-5595-01 19 994262 994262 G A WDR18 Silent p.E406E 0.47 TCGA-18-5595-01 1 113616220 113616220 G T LRIG2 Silent p.P64P 0.39 TCGA-18-5595-01 1 119474418 119474418 G A TBX15 5'UTR 0.41 TCGA-18-5595-01 1 119575726 119575726 C T WARS2 Missense_Mutation p.M297I 0.40 tolerated(0.21) benign(0.003) TCGA-18-5595-01 1 120057214 120057214 G A HSD3B1 Nonsense_Mutation p.W356* 0.17 TCGA-18-5595-01 1 1431162 1431162 C T ATAD3B Missense_Mutation p.R638W 0.11 tolerated_low_confidence(0.11) benign(0.04) TCGA-18-5595-01 1 144856874 144856874 A C PDE4DIP Missense_Mutation p.I2204R 0.17 deleterious(0) possibly_damaging(0.642) TCGA-18-5595-01 1 145474701 145474701 C T ANKRD34A Missense_Mutation p.A458V 0.46 tolerated(0.39) benign(0.058) TCGA-18-5595-01 1 153751662 153751662 G C SLC27A3 Silent p.V620V 0.45 TCGA-18-5595-01 1 153954862 153954862 C A RAB13 Intron 0.03 TCGA-18-5595-01 1 154321509 154321509 C A ATP8B2 Missense_Mutation p.S1196Y 0.07 deleterious(0) unknown(0) TCGA-18-5595-01 1 156877498 156877498 C T PEAR1 Silent p.S247S 0.12 TCGA-18-5595-01 1 168059878 168059878 C T GPR161 Silent p.A396A 0.38 TCGA-18-5595-01 1 169798416 169798416 C T C1orf112 Silent p.L380L 0.40 TCGA-18-5595-01 1 171080030 171080030 G A FMO3 Missense_Mutation p.G240E 0.38 tolerated(0.87) benign(0.002) TCGA-18-5595-01 1 171085395 171085395 G C FMO3 Missense_Mutation p.E411Q 0.46 tolerated(0.32) benign(0.236) TCGA-18-5595-01 1 176811646 176811646 G A PAPPA2 3'UTR 0.65 TCGA-18-5595-01 1 193150785 193150785 C T B3GALT2 5'UTR 0.28 TCGA-18-5595-01 1 19440528 19440528 C T UBR4 Missense_Mutation p.D3747N 0.44 probably_damaging(0.956) TCGA-18-5595-01 1 19992308 19992308 C T HTR6 Missense_Mutation p.S21L 0.41 deleterious(0.01) benign(0.038) TCGA-18-5595-01 1 200959778 200959778 G A KIF21B Nonsense_Mutation p.R921* 0.38 TCGA-18-5595-01 1 201915418 201915418 G A LMOD1 Silent p.I17I 0.46 TCGA-18-5595-01 1 207644250 207644250 C T CR2 Missense_Mutation p.P464L 0.12 deleterious(0) probably_damaging(1) TCGA-18-5595-01 1 209605512 209605512 C T MIR205HG Intron 0.36 TCGA-18-5595-01 1 213415398 213415398 C T RPS6KC1 Missense_Mutation p.S860F 0.34 tolerated(0.11) benign(0.181) TCGA-18-5595-01 1 214178591 214178591 G A PROX1 Silent p.L603L 0.38 TCGA-18-5595-01 1 21887195 21887195 C T ALPL Silent p.L46L 0.38 TCGA-18-5595-01 1 224804736 224804736 C A CNIH3 5'UTR 0.33 TCGA-18-5595-01 1 224927123 224927123 C T CNIH3 3'UTR 0.46 TCGA-18-5595-01 1 228437684 228437684 C A OBSCN Missense_Mutation p.A1443E 0.11 probably_damaging(0.973) TCGA-18-5595-01 1 234528184 234528184 C T TARBP1 Missense_Mutation p.E1559K 0.39 deleterious(0.02) probably_damaging(0.998) TCGA-18-5595-01 1 23751196 23751196 G A TCEA3 5'UTR 0.30 TCGA-18-5595-01 1 247769064 247769064 G A OR2G3 Missense_Mutation p.M59I 0.03 deleterious(0.02) benign(0.053) TCGA-18-5595-01 1 248129125 248129125 G T OR2AK2 Missense_Mutation p.W164C 0.40 deleterious(0) probably_damaging(1) TCGA-18-5595-01 1 26355755 26355755 C T EXTL1 Missense_Mutation p.S284L 0.38 tolerated(0.12) benign(0.003) TCGA-18-5595-01 1 29585210 29585210 G T PTPRU Missense_Mutation p.W133C 0.39 deleterious(0) probably_damaging(1) TCGA-18-5595-01 1 29647244 29647244 G A PTPRU Silent p.Q1255Q 0.32 TCGA-18-5595-01 1 34118047 34118047 C T CSMD2 Missense_Mutation p.D1448N 0.36 tolerated(1) benign(0.009) TCGA-18-5595-01 1 36931785 36931785 C T CSF3R 3'UTR 0.42 TCGA-18-5595-01 1 52991942 52991942 G C ZCCHC11 Missense_Mutation p.S4C 0.50 tolerated_low_confidence(0.05) possibly_damaging(0.804) TCGA-18-5595-01 1 55050433 55050433 G T ACOT11 Missense_Mutation p.V47L 0.09 deleterious(0.01) benign(0.26) TCGA-18-5595-01 1 91781509 91781509 C T HFM1 Silent p.T1001T 0.38 TCGA-18-5595-01 20 20018062 20018062 C G CRNKL1 Missense_Mutation p.E762Q 0.41 deleterious(0) probably_damaging(0.996) TCGA-18-5595-01 20 33337252 33337252 T A NCOA6 Nonsense_Mutation p.K916* 0.13 TCGA-18-5595-01 20 33337253 33337253 C T NCOA6 Silent p.K915K 0.13 TCGA-18-5595-01 20 33530486 33530486 T A GSS Intron 0.29 TCGA-18-5595-01 20 34761730 34761731 - T EPB41L1 Frame_Shift_Ins p.K12Efs*35 0.12 TCGA-18-5595-01 20 47711383 47711383 C T CSE1L Silent p.F903F 0.39 TCGA-18-5595-01 21 17138410 17138410 C A USP25 Missense_Mutation p.A73E 0.06 tolerated(0.15) possibly_damaging(0.587) TCGA-18-5595-01 21 19629100 19629100 C A CHODL Silent p.L118L 0.37 TCGA-18-5595-01 21 39493330 39493330 G A DSCR4 Missense_Mutation p.T7M 0.42 possibly_damaging(0.897) TCGA-18-5595-01 21 46686088 46686088 C T POFUT2 Intron 0.51 TCGA-18-5595-01 22 28196346 28196346 G A MN1 Silent p.G62G 0.53 TCGA-18-5595-01 22 29456416 29456416 C A C22orf31 Missense_Mutation p.G140V 0.17 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-18-5595-01 22 30416154 30416154 G A MTMR3 Missense_Mutation p.E836K 0.44 tolerated_low_confidence(0.18) possibly_damaging(0.571) TCGA-18-5595-01 22 32914270 32914270 G A SYN3 Missense_Mutation p.S457F 0.46 tolerated(0.14) unknown(0) TCGA-18-5595-01 22 38153942 38153942 G A TRIOBP Missense_Mutation p.E2004K 0.46 deleterious(0.05) possibly_damaging(0.725) TCGA-18-5595-01 22 42289166 42289166 A T SREBF2 Missense_Mutation p.S752C 0.05 tolerated(0.05) benign(0.004) TCGA-18-5595-01 22 50897936 50897936 G A SBF1 Silent p.V1217V 0.43 TCGA-18-5595-01 2 118709951 118709951 C T CCDC93 Missense_Mutation p.E356K 0.42 deleterious(0.01) benign(0.08) TCGA-18-5595-01 2 128392713 128392713 C T MYO7B Missense_Mutation p.P1885L 0.14 deleterious(0.02) possibly_damaging(0.632) TCGA-18-5595-01 2 160031616 160031616 G A TANC1 Silent p.L552L 0.44 TCGA-18-5595-01 2 197028073 197028073 G A STK17B Missense_Mutation p.S12L 0.36 deleterious(0.05) benign(0.003) TCGA-18-5595-01 2 202700390 202700390 C T CDK15 Missense_Mutation p.P252L 0.21 deleterious(0.02) benign(0.085) TCGA-18-5595-01 2 219545378 219545378 G A STK36 Missense_Mutation p.E397K 0.34 tolerated(0.11) possibly_damaging(0.824) TCGA-18-5595-01 2 225376190 225376190 G C CUL3 Nonsense_Mutation p.S255* 0.37 TCGA-18-5595-01 2 24981004 24981004 G T NCOA1 Missense_Mutation p.M1348I 0.32 tolerated(0.05) probably_damaging(0.914) TCGA-18-5595-01 2 27278619 27278619 C G AGBL5 Missense_Mutation p.I326M 0.41 deleterious(0) possibly_damaging(0.89) TCGA-18-5595-01 2 63058184 63058184 G C EHBP1 Missense_Mutation p.L175F 0.39 deleterious(0.03) probably_damaging(0.998) TCGA-18-5595-01 2 63058260 63058260 G C EHBP1 Missense_Mutation p.V201L 0.39 tolerated(0.12) benign(0.012) TCGA-18-5595-01 2 85626370 85626374 CAGGA - CAPG Frame_Shift_Del p.I184Rfs*16 0.46 TCGA-18-5595-01 3 102175056 102175056 T A ZPLD1 Missense_Mutation p.V132D 0.16 tolerated(0.06) benign(0.085) TCGA-18-5595-01 3 102175057 102175057 C G ZPLD1 Silent p.V132V 0.16 TCGA-18-5595-01 3 108403129 108403129 C G DZIP3 Missense_Mutation p.Q984E 0.40 tolerated(0.16) benign(0.05) TCGA-18-5595-01 3 113135402 113135402 G A WDR52 Missense_Mutation p.P215S 0.27 deleterious(0.01) probably_damaging(0.947) TCGA-18-5595-01 3 113378598 113378598 G A KIAA2018 Missense_Mutation p.S644L 0.41 benign(0.169) TCGA-18-5595-01 3 114070442 114070442 G A ZBTB20 Silent p.G161G 0.35 TCGA-18-5595-01 3 122269520 122269520 C G PARP9 Missense_Mutation p.D448H 0.45 deleterious(0.01) benign(0.099) TCGA-18-5595-01 3 123376143 123376143 G A MYLK Missense_Mutation p.S1373L 0.12 deleterious(0.01) possibly_damaging(0.476) TCGA-18-5595-01 3 12545158 12545158 C T TSEN2 Missense_Mutation p.H236Y 0.56 deleterious(0.01) benign(0.008) TCGA-18-5595-01 3 129226555 129226555 C T IFT122 Nonsense_Mutation p.Q997* 0.49 TCGA-18-5595-01 3 131261514 131261514 C T CPNE4 Missense_Mutation p.D476N 0.20 deleterious(0.03) probably_damaging(0.989) TCGA-18-5595-01 3 139173596 139173596 C T RBP2 Nonsense_Mutation p.W110* 0.41 TCGA-18-5595-01 3 14170986 14170986 G A TMEM43 Silent p.L29L 0.32 TCGA-18-5595-01 3 142503613 142503613 G T TRPC1 Missense_Mutation p.R343L 0.69 deleterious(0) benign(0.343) TCGA-18-5595-01 3 150906168 150906168 G A MED12L Missense_Mutation p.E552K 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-18-5595-01 3 160219934 160219934 G A KPNA4 Silent p.F508F 0.19 TCGA-18-5595-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.46 deleterious(0.02) probably_damaging(0.959) TCGA-18-5595-01 3 178938934 178938934 G A PIK3CA Missense_Mutation p.E726K 0.11 tolerated(0.36) benign(0.4) TCGA-18-5595-01 3 183382716 183382716 A G KLHL24 Silent p.R371R 0.09 TCGA-18-5595-01 3 183528294 183528294 C T YEATS2 Missense_Mutation p.H1398Y 0.18 tolerated(0.1) probably_damaging(0.997) TCGA-18-5595-01 3 184002858 184002858 G A ECE2 Silent p.Q489Q 0.03 TCGA-18-5595-01 3 194991425 194991425 C T XXYLT1 Silent p.A121A 0.67 TCGA-18-5595-01 3 196388655 196388655 C T NRROS 3'UTR 0.11 TCGA-18-5595-01 3 19938194 19938194 G A EFHB Silent p.F570F 0.37 TCGA-18-5595-01 3 49039978 49039978 G A P4HTM Missense_Mutation p.E225K 0.35 deleterious(0.03) possibly_damaging(0.73) TCGA-18-5595-01 3 49043509 49043509 G A P4HTM Missense_Mutation p.D454N 0.40 tolerated(1) benign(0.122) TCGA-18-5595-01 3 49043512 49043512 G T P4HTM Missense_Mutation p.D455Y 0.40 tolerated(0.1) probably_damaging(0.93) TCGA-18-5595-01 3 52830560 52830560 C T ITIH3 Missense_Mutation p.H60Y 0.35 deleterious(0) probably_damaging(0.943) TCGA-18-5595-01 3 56681054 56681054 G A FAM208A Nonsense_Mutation p.R571* 0.40 TCGA-18-5595-01 3 69105003 69105003 T A UBA3 Missense_Mutation p.K434N 0.17 tolerated(0.31) benign(0.009) TCGA-18-5595-01 3 77617511 77617511 G C ROBO2 Missense_Mutation p.E649Q 0.05 deleterious(0.02) possibly_damaging(0.578) TCGA-18-5595-01 3 78684989 78684989 C T ROBO1 Missense_Mutation p.G1103R 0.14 tolerated(0.41) benign(0.109) TCGA-18-5595-01 4 118005414 118005414 G A TRAM1L1 3'UTR 0.04 TCGA-18-5595-01 4 126412458 126412458 G T FAT4 Missense_Mutation p.R4827S 0.15 probably_damaging(0.985) TCGA-18-5595-01 4 134072188 134072188 G T PCDH10 Missense_Mutation p.R298L 0.35 deleterious(0) benign(0.041) TCGA-18-5595-01 4 140264007 140264007 C T NAA15 Nonsense_Mutation p.R144* 0.42 TCGA-18-5595-01 4 153247289 153247289 G T FBXW7 Missense_Mutation p.R505S 0.41 deleterious(0.03) probably_damaging(1) TCGA-18-5595-01 4 170994374 170994374 G A AADAT Silent p.N189N 0.43 TCGA-18-5595-01 4 187130031 187130031 G A CYP4V2 Missense_Mutation p.R368H 0.38 tolerated(0.05) benign(0.12) TCGA-18-5595-01 4 88261719 88261719 C G HSD17B11 Missense_Mutation p.R245S 0.21 tolerated(0.23) benign(0) TCGA-18-5595-01 4 95200089 95200089 C G SMARCAD1 Missense_Mutation p.T771R 0.16 tolerated(0.56) benign(0.004) TCGA-18-5595-01 5 108436132 108436132 G C FER Missense_Mutation p.D654H 0.54 tolerated(0.21) probably_damaging(0.962) TCGA-18-5595-01 5 131630483 131630483 G C SLC22A4 Silent p.L58L 0.28 TCGA-18-5595-01 5 13793676 13793676 G C DNAH5 Missense_Mutation p.F2724L 0.20 benign(0.418) TCGA-18-5595-01 5 140557822 140557822 C T PCDHB8 Silent p.S69S 0.13 TCGA-18-5595-01 5 140740504 140740504 G A PCDHGB2 Missense_Mutation p.D268N 0.24 deleterious(0) probably_damaging(1) TCGA-18-5595-01 5 140755477 140755477 C T PCDHGA6 Silent p.L609L 0.09 TCGA-18-5595-01 5 150282745 150282745 C A ZNF300 Splice_Site p.X8_splice 0.12 TCGA-18-5595-01 5 176884741 176884741 G C DBN1 Missense_Mutation p.F600L 0.37 deleterious(0) probably_damaging(0.986) TCGA-18-5595-01 5 179264608 179264608 G A C5orf45 Missense_Mutation p.S272L 0.34 tolerated(0.1) benign(0.012) TCGA-18-5595-01 5 59064198 59064198 C T PDE4D Intron 0.45 TCGA-18-5595-01 5 68602672 68602672 C G CCDC125 Missense_Mutation p.E197Q 0.39 deleterious(0.03) probably_damaging(0.986) TCGA-18-5595-01 5 72469927 72469927 G A TMEM174 Missense_Mutation p.E223K 0.39 tolerated(0.34) benign(0.085) TCGA-18-5595-01 5 79284338 79284338 G A MTX3 Missense_Mutation p.L90F 0.32 tolerated(0.15) probably_damaging(0.911) TCGA-18-5595-01 5 85913790 85913790 C T COX7C 5'UTR 0.22 TCGA-18-5595-01 6 127797008 127797008 C G SOGA3 Missense_Mutation p.Q721H 0.19 deleterious(0) probably_damaging(0.968) TCGA-18-5595-01 6 127912860 127912860 C T C6orf58 3'UTR 0.50 TCGA-18-5595-01 6 129470193 129470193 C T LAMA2 Nonsense_Mutation p.Q327* 0.46 TCGA-18-5595-01 6 132270390 132270390 C T CTGF 3'UTR 0.30 TCGA-18-5595-01 6 17760962 17760962 C T KIF13A 3'Flank 0.38 TCGA-18-5595-01 6 25826862 25826862 C T SLC17A1 Splice_Site p.X12_splice 0.12 TCGA-18-5595-01 6 26250542 26250542 C T HIST1H3F Missense_Mutation p.E98K 0.32 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-18-5595-01 6 2840762 2840762 C T SERPINB1 Missense_Mutation p.S20N 0.51 tolerated(0.93) benign(0.013) TCGA-18-5595-01 6 29054567 29054567 G A OR2B3 Silent p.F153F 0.38 TCGA-18-5595-01 6 31584147 31584147 G T AIF1 Nonsense_Mutation p.E75* 0.36 TCGA-18-5595-01 6 32014110 32014110 T A TNXB 5'Flank 0.11 TCGA-18-5595-01 6 32096798 32096798 G A FKBPL Missense_Mutation p.L254F 0.35 deleterious(0.01) probably_damaging(1) TCGA-18-5595-01 6 33133329 33133329 C T COL11A2 Missense_Mutation p.D1497N 0.41 unknown(0) TCGA-18-5595-01 6 36823644 36823644 G A PPIL1 Missense_Mutation p.S149F 0.33 deleterious(0.03) benign(0.401) TCGA-18-5595-01 6 54805161 54805161 G T FAM83B Silent p.R464R 0.19 TCGA-18-5595-01 6 96053844 96053844 G C MANEA Missense_Mutation p.D318H 0.39 deleterious(0) probably_damaging(0.96) TCGA-18-5595-01 6 9897100 9897100 T A OFCC1 Intron 0.14 TCGA-18-5595-01 7 1132417 1132417 C A GPER1 Missense_Mutation p.F351L 0.11 tolerated_low_confidence(0.39) benign(0.008) TCGA-18-5595-01 7 128587850 128587850 C G IRF5 Silent p.P285P 0.15 TCGA-18-5595-01 7 128807655 128807655 C T TSPAN33 Silent p.I264I 0.65 TCGA-18-5595-01 7 142032026 142032026 C G TRBV7-1 5'UTR 0.26 TCGA-18-5595-01 7 143079462 143079462 G A ZYX Silent p.E110E 0.24 TCGA-18-5595-01 7 150923419 150923419 C A ABCF2 Missense_Mutation p.K42N 0.21 tolerated(0.55) benign(0.001) TCGA-18-5595-01 7 150923420 150923420 T A ABCF2 Missense_Mutation p.K42M 0.21 tolerated(0.08) benign(0.003) TCGA-18-5595-01 7 27285874 27285874 T C EVX1 Missense_Mutation p.C352R 0.25 deleterious(0) probably_damaging(0.999) TCGA-18-5595-01 7 7612875 7612875 G C MIOS Missense_Mutation p.E257Q 0.41 deleterious(0.02) probably_damaging(0.969) TCGA-18-5595-01 7 94539355 94539355 G C PPP1R9A 5'UTR 0.47 TCGA-18-5595-01 7 99696789 99696789 G A MCM7 Missense_Mutation p.R147C 0.42 deleterious(0.01) benign(0.276) TCGA-18-5595-01 8 100904230 100904230 G A COX6C Missense_Mutation p.P7L 0.60 tolerated(0.18) benign(0.008) TCGA-18-5595-01 8 101054100 101054100 G C RGS22 Missense_Mutation p.S623C 0.44 deleterious(0.01) probably_damaging(0.979) TCGA-18-5595-01 8 101146458 101146458 T A FBXO43 Silent p.G603G 0.09 TCGA-18-5595-01 8 101146459 101146459 C A FBXO43 Missense_Mutation p.G603V 0.10 tolerated(0.08) possibly_damaging(0.854) TCGA-18-5595-01 8 144997746 144997746 C A PLEC Silent p.L2254L 0.34 TCGA-18-5595-01 8 145151959 145151959 G C CYC1 Missense_Mutation p.Q265H 0.55 deleterious(0) probably_damaging(0.997) TCGA-18-5595-01 8 145152203 145152203 G A CYC1 Silent p.L314L 0.55 TCGA-18-5595-01 8 145659005 145659005 C T TONSL Silent p.L1175L 0.23 TCGA-18-5595-01 8 21982982 21982982 T G HR Missense_Mutation p.D531A 0.43 tolerated(0.75) benign(0.018) TCGA-18-5595-01 8 23186002 23186002 C T LOXL2 Missense_Mutation p.G348E 0.25 deleterious(0) probably_damaging(1) TCGA-18-5595-01 8 35624453 35624453 C T UNC5D Missense_Mutation p.R783W 0.56 deleterious(0) possibly_damaging(0.614) TCGA-18-5595-01 8 59410984 59410984 A G CYP7A1 Missense_Mutation p.L42P 0.09 deleterious(0) probably_damaging(0.997) TCGA-18-5595-01 8 59410985 59410985 G T CYP7A1 Missense_Mutation p.L42M 0.09 deleterious(0.01) probably_damaging(0.988) TCGA-18-5595-01 8 90926317 90926317 C T OSGIN2 Missense_Mutation p.S71L 0.20 deleterious(0) benign(0.287) TCGA-18-5595-01 8 93074890 93074890 G C RUNX1T1 Intron 0.25 TCGA-18-5595-01 9 104239109 104239109 G A TMEM246 Missense_Mutation p.S89L 0.25 tolerated(0.22) benign(0.258) TCGA-18-5595-01 9 111734973 111734973 C T CTNNAL1 Silent p.Q443Q 0.44 TCGA-18-5595-01 9 139103153 139103153 G A QSOX2 Silent p.L502L 0.37 TCGA-18-5595-01 9 139282968 139282968 C T SNAPC4 Missense_Mutation p.E351K 0.40 tolerated(0.45) benign(0.314) TCGA-18-5595-01 9 140146534 140146534 G C C9orf173 Missense_Mutation p.R117P 0.36 deleterious(0) probably_damaging(0.986) TCGA-18-5595-01 9 140150507 140150507 G A NELFB Missense_Mutation p.G84E 0.12 tolerated(0.08) possibly_damaging(0.804) TCGA-18-5595-01 9 40772474 40772474 C A ZNF658 Missense_Mutation p.G934V 0.12 deleterious(0) probably_damaging(1) TCGA-18-5595-01 9 40772516 40772516 G A ZNF658 Missense_Mutation p.S920F 0.13 tolerated(0.07) probably_damaging(0.999) TCGA-18-5595-01 9 79002169 79002169 G C RFK 3'UTR 0.46 TCGA-18-5595-01 9 79520932 79520932 C T PRUNE2 5'UTR 0.40 TCGA-18-5595-01 X 11316382 11316382 G C AMELX Missense_Mutation p.Q57H 0.85 deleterious(0) probably_damaging(0.999) TCGA-18-5595-01 X 134303630 134303630 G A CT55 Missense_Mutation p.S56L 0.78 tolerated(1) benign(0.156) TCGA-18-5595-01 X 151900253 151900253 C A MAGEA12 Missense_Mutation p.G183V 0.04 deleterious(0) probably_damaging(0.999) TCGA-18-5595-01 X 20030525 20030525 C T MAP7D2 Missense_Mutation p.D672N 0.86 tolerated(0.06) unknown(0) TCGA-18-5595-01 X 47978943 47978943 C A SSX6 RNA 0.81 TCGA-18-5595-01 X 47979585 47979585 G A SSX6 RNA 0.91 TCGA-18-5595-01 X 77112282 77112282 C G MAGT1 Missense_Mutation p.R239T 0.83 deleterious(0) possibly_damaging(0.877) TCGA-21-1070-01 10 101560142 101560142 G T ABCC2 Splice_Site p.X344_splice 0.22 TCGA-21-1070-01 10 101816862 101816862 G T CPN1 Missense_Mutation p.L307M 0.25 deleterious(0.01) probably_damaging(0.924) TCGA-21-1070-01 10 101825081 101825081 T C CPN1 Missense_Mutation p.N208S 0.26 tolerated(0.06) probably_damaging(0.971) TCGA-21-1070-01 10 105197773 105197792 TGTTACATCCTGTCCACTGC - PDCD11 Frame_Shift_Del p.C1283Rfs*27 0.13 TCGA-21-1070-01 10 117221452 117221452 C G ATRNL1 Nonsense_Mutation p.Y1108* 0.19 TCGA-21-1070-01 10 124358505 124358505 G T DMBT1 Missense_Mutation p.D1058Y 0.24 deleterious(0) unknown(0) TCGA-21-1070-01 10 1405819 1405819 C A ADARB2 Nonsense_Mutation p.E161* 0.18 TCGA-21-1070-01 10 26569998 26569998 T A GAD2 Silent p.A406A 0.23 TCGA-21-1070-01 10 27702764 27702764 C T PTCHD3 Nonsense_Mutation p.W139* 0.23 TCGA-21-1070-01 10 28225785 28225785 C A ARMC4 Missense_Mutation p.D708Y 0.21 deleterious(0.04) possibly_damaging(0.588) TCGA-21-1070-01 10 29578038 29578038 C T LYZL1 5'UTR 0.19 TCGA-21-1070-01 10 30918643 30918643 G A LYZL2 5'UTR 0.06 TCGA-21-1070-01 10 32101679 32101679 C A ARHGAP12 Missense_Mutation p.R636L 0.26 deleterious(0) possibly_damaging(0.632) TCGA-21-1070-01 10 38345387 38345387 G T ZNF33A Nonsense_Mutation p.E779* 0.18 TCGA-21-1070-01 10 47158894 47158894 T G ANXA8L1 Missense_Mutation p.E309D 0.14 tolerated(0.38) benign(0) TCGA-21-1070-01 10 50870730 50870730 C G CHAT Missense_Mutation p.L627V 0.21 deleterious(0) probably_damaging(1) TCGA-21-1070-01 10 50952119 50952119 C A OGDHL Silent p.T594T 0.15 TCGA-21-1070-01 10 51749119 51749119 G T AGAP6 Missense_Mutation p.R92M 0.18 deleterious_low_confidence(0.01) benign(0.069) TCGA-21-1070-01 10 61823935 61823935 C G ANK3 Missense_Mutation p.R4144T 0.21 probably_damaging(0.967) TCGA-21-1070-01 10 62645901 62645901 C A RHOBTB1 Missense_Mutation p.G515V 0.17 deleterious(0.04) possibly_damaging(0.828) TCGA-21-1070-01 10 70048725 70048725 G C PBLD Missense_Mutation p.Q159E 0.05 deleterious(0.04) benign(0.027) TCGA-21-1070-01 10 70446379 70446379 G T TET1 Silent p.V1773V 0.20 TCGA-21-1070-01 10 7217978 7217978 C A SFMBT2 Missense_Mutation p.C653F 0.12 deleterious(0) probably_damaging(0.997) TCGA-21-1070-01 10 72617373 72617373 G T SGPL1 Missense_Mutation p.A138S 0.17 tolerated(0.74) benign(0.002) TCGA-21-1070-01 10 73562740 73562740 C G CDH23 Missense_Mutation p.P283R 0.23 tolerated(0.06) possibly_damaging(0.801) TCGA-21-1070-01 10 7409611 7409611 C A SFMBT2 Missense_Mutation p.A146S 0.15 tolerated(0.12) possibly_damaging(0.837) TCGA-21-1070-01 10 76868782 76868782 A G DUSP13 Missense_Mutation p.L45P 0.19 deleterious(0.01) benign(0.367) TCGA-21-1070-01 10 85971451 85971451 C A CDHR1 Silent p.T511T 0.25 TCGA-21-1070-01 10 85981651 85981651 G T LRIT2 3'UTR 0.23 TCGA-21-1070-01 10 88649924 88649924 T A BMPR1A Missense_Mutation p.F58Y 0.12 tolerated(0.23) possibly_damaging(0.831) TCGA-21-1070-01 10 96253172 96253172 A T TBC1D12 Missense_Mutation p.Y421F 0.17 deleterious(0.05) probably_damaging(0.993) TCGA-21-1070-01 10 97158878 97158878 C T SORBS1 Missense_Mutation p.G352S 0.26 tolerated_low_confidence(0.87) benign(0.003) TCGA-21-1070-01 11 102487666 102487666 G T MMP20 Missense_Mutation p.T84N 0.19 deleterious(0.02) probably_damaging(0.961) TCGA-21-1070-01 11 1156570 1156570 A T MUC5AC Splice_Site p.X197_splice 0.29 TCGA-21-1070-01 11 123894186 123894186 C T OR10G9 Missense_Mutation p.A156V 0.29 tolerated(0.09) probably_damaging(0.954) TCGA-21-1070-01 11 124180337 124180337 A T OR8D1 Missense_Mutation p.V109E 0.33 deleterious(0) possibly_damaging(0.649) TCGA-21-1070-01 11 124765350 124765350 G T ROBO4 Intron 0.26 TCGA-21-1070-01 11 125472715 125472715 G T STT3A Missense_Mutation p.A97S 0.19 tolerated(0.06) possibly_damaging(0.612) TCGA-21-1070-01 11 126075379 126075379 C A RPUSD4 Missense_Mutation p.E260D 0.23 deleterious(0.01) probably_damaging(0.992) TCGA-21-1070-01 11 21592424 21592424 G A NELL1 Missense_Mutation p.G699S 0.23 tolerated(0.08) possibly_damaging(0.806) TCGA-21-1070-01 11 32410592 32410592 G A WT1 3'UTR 0.27 TCGA-21-1070-01 11 34988317 34988317 C T PDHX Missense_Mutation p.P258S 0.21 deleterious(0.05) benign(0.209) TCGA-21-1070-01 11 45265546 45265546 G T SYT13 3'UTR 0.31 TCGA-21-1070-01 11 45950301 45950301 G A GYLTL1B Missense_Mutation p.D691N 0.29 tolerated(0.19) benign(0.024) TCGA-21-1070-01 11 48347191 48347191 G T OR4C3 Silent p.L233L 0.04 TCGA-21-1070-01 11 51411694 51411694 C A OR4A5 Missense_Mutation p.L234F 0.20 tolerated_low_confidence(0.06) possibly_damaging(0.624) TCGA-21-1070-01 11 55735485 55735485 C A OR10AG1 Missense_Mutation p.C152F 0.27 tolerated(0.34) benign(0.024) TCGA-21-1070-01 11 55872597 55872597 G T OR8H2 Missense_Mutation p.A27S 0.21 tolerated(0.19) benign(0.071) TCGA-21-1070-01 11 56086487 56086487 G C OR8K3 Missense_Mutation p.K235N 0.23 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-21-1070-01 11 57472067 57472067 T C MED19 3'UTR 0.23 TCGA-21-1070-01 11 57559064 57559064 G T CTNND1 Silent p.S38S 0.21 TCGA-21-1070-01 11 5776353 5776353 T A OR52N4 Missense_Mutation p.I128N 0.28 deleterious(0) possibly_damaging(0.813) TCGA-21-1070-01 11 58274771 58274771 T - OR5B21 Frame_Shift_Del p.I270* 0.26 TCGA-21-1070-01 11 58602171 58602171 C A GLYATL2 Missense_Mutation p.G206C 0.21 deleterious(0) probably_damaging(0.985) TCGA-21-1070-01 11 59382818 59382818 C A OSBP Missense_Mutation p.R107L 0.15 deleterious(0) probably_damaging(0.965) TCGA-21-1070-01 11 5969286 5969286 C A OR56A3 Missense_Mutation p.A237D 0.34 deleterious(0.01) benign(0.25) TCGA-21-1070-01 11 60105257 60105257 C A MS4A6E Missense_Mutation p.A64D 0.23 deleterious(0) probably_damaging(0.999) TCGA-21-1070-01 11 60567425 60567425 C - MS4A10 3'UTR 0.17 TCGA-21-1070-01 11 61083777 61083777 C G DDB1 Missense_Mutation p.A464P 0.24 tolerated(0.28) benign(0.359) TCGA-21-1070-01 11 619004 619004 C A CDHR5 Missense_Mutation p.G519W 0.29 deleterious(0) probably_damaging(0.989) TCGA-21-1070-01 11 61977983 61977983 A G SCGB2A1 Missense_Mutation p.S52G 0.24 tolerated(0.72) benign(0.418) TCGA-21-1070-01 11 63681958 63681958 G A RCOR2 Missense_Mutation p.T179I 0.23 deleterious(0) probably_damaging(0.996) TCGA-21-1070-01 11 64418751 64418751 A T NRXN2 Missense_Mutation p.F965Y 0.23 deleterious(0.03) probably_damaging(0.936) TCGA-21-1070-01 11 65784336 65784336 G A CATSPER1 3'UTR 0.28 TCGA-21-1070-01 11 6622767 6622767 G A RRP8 Missense_Mutation p.P177S 0.28 tolerated(0.24) benign(0.007) TCGA-21-1070-01 11 6653340 6653340 C A DCHS1 Nonsense_Mutation p.G1135* 0.27 TCGA-21-1070-01 11 67250547 67250547 G C AIP 5'UTR 0.21 TCGA-21-1070-01 11 72945604 72945604 G C P2RY2 Missense_Mutation p.G134R 0.09 deleterious(0) probably_damaging(0.996) TCGA-21-1070-01 11 78381554 78381554 C T TENM4 Missense_Mutation p.E1946K 0.10 deleterious(0) possibly_damaging(0.765) TCGA-21-1070-01 11 85445114 85445114 C A SYTL2 Missense_Mutation p.G419W 0.16 deleterious(0) probably_damaging(0.945) TCGA-21-1070-01 11 85445676 85445676 C A SYTL2 Missense_Mutation p.K231N 0.22 deleterious(0.03) probably_damaging(0.998) TCGA-21-1070-01 12 100431478 100431478 A G UHRF1BP1L Missense_Mutation p.L1444P 0.16 deleterious(0) probably_damaging(0.999) TCGA-21-1070-01 12 100904912 100904912 G T NR1H4 Missense_Mutation p.G156W 0.18 deleterious(0) probably_damaging(1) TCGA-21-1070-01 12 101491478 101491478 C A ANO4 Missense_Mutation p.L599I 0.15 tolerated(0.49) possibly_damaging(0.792) TCGA-21-1070-01 12 104476524 104476524 C A HCFC2 Missense_Mutation p.S303Y 0.05 tolerated(0.09) possibly_damaging(0.564) TCGA-21-1070-01 12 107090222 107090222 C A RFX4 Missense_Mutation p.D286E 0.27 tolerated(0.55) benign(0.069) TCGA-21-1070-01 12 11083462 11083462 C G PRH2 Missense_Mutation p.P101R 0.24 deleterious_low_confidence(0.03) unknown(0) TCGA-21-1070-01 12 111358331 111358331 C A MYL2 Translation_Start_Site p.M1? 0.17 deleterious(0.01) unknown(0) TCGA-21-1070-01 12 114793746 114793746 G - TBX5 Frame_Shift_Del p.S383Lfs*11 0.11 TCGA-21-1070-01 12 117672527 117672527 C - NOS1 Frame_Shift_Del p.S1061Afs*23 0.27 TCGA-21-1070-01 12 120637225 120637225 T A RPLP0 Missense_Mutation p.M40L 0.23 tolerated(0.2) benign(0.031) TCGA-21-1070-01 12 120637226 120637226 C A RPLP0 Missense_Mutation p.Q39H 0.22 deleterious(0) possibly_damaging(0.89) TCGA-21-1070-01 12 121766123 121766123 G A ANAPC5 Missense_Mutation p.R434C 0.18 deleterious(0) possibly_damaging(0.873) TCGA-21-1070-01 12 124156062 124156062 C T TCTN2 Missense_Mutation p.P31S 0.20 deleterious(0) probably_damaging(1) TCGA-21-1070-01 12 125434992 125434992 C A DHX37 Missense_Mutation p.G1030W 0.17 deleterious(0) probably_damaging(0.999) TCGA-21-1070-01 12 129558905 129558905 C G TMEM132D Missense_Mutation p.V939L 0.26 deleterious(0.02) benign(0.053) TCGA-21-1070-01 12 129559349 129559349 C - TMEM132D Frame_Shift_Del p.A791Qfs*82 0.09 TCGA-21-1070-01 12 1995536 1995536 G A CACNA2D4 Silent p.Y282Y 0.29 TCGA-21-1070-01 12 20903767 20903767 A G SLCO1C1 Missense_Mutation p.I653V 0.10 tolerated(0.74) benign(0) TCGA-21-1070-01 12 21350092 21350092 C A SLCO1B1 Missense_Mutation p.Q314K 0.16 tolerated(1) benign(0.01) TCGA-21-1070-01 12 21422583 21422583 C A SLCO1A2 Nonsense_Mutation p.E638* 0.33 TCGA-21-1070-01 12 21794951 21794951 T A LDHB Missense_Mutation p.E177V 0.22 deleterious(0.01) benign(0.101) TCGA-21-1070-01 12 21954116 21954116 C A ABCC9 Splice_Site p.X1505_splice 0.29 TCGA-21-1070-01 12 2775903 2775903 G A CACNA1C Silent p.P1574P 0.26 TCGA-21-1070-01 12 4873152 4873152 A T GALNT8 Missense_Mutation p.D511V 0.23 deleterious(0) probably_damaging(0.945) TCGA-21-1070-01 12 50501542 50501542 C T GPD1 Missense_Mutation p.R269W 0.25 deleterious(0) probably_damaging(1) TCGA-21-1070-01 12 5154937 5154937 C A KCNA5 Missense_Mutation p.Q542K 0.25 tolerated(0.34) benign(0.106) TCGA-21-1070-01 12 53233571 53233571 C T KRT78 Silent p.R415R 0.26 TCGA-21-1070-01 12 53494917 53494917 C G IGFBP6 Missense_Mutation p.D191E 0.23 deleterious(0) probably_damaging(0.999) TCGA-21-1070-01 12 53722390 53722390 T C SP7 Missense_Mutation p.E279G 0.16 deleterious(0) benign(0.068) TCGA-21-1070-01 12 54917320 54917320 C A NCKAP1L Missense_Mutation p.T674N 0.22 deleterious(0.02) possibly_damaging(0.766) TCGA-21-1070-01 12 55863141 55863141 G A OR6C70 Missense_Mutation p.S261L 0.23 deleterious_low_confidence(0) possibly_damaging(0.864) TCGA-21-1070-01 12 57114725 57114725 G A NACA Missense_Mutation p.P197S 0.24 deleterious_low_confidence(0) benign(0) TCGA-21-1070-01 12 58090110 58090110 G T OS9 Missense_Mutation p.G178V 0.26 deleterious(0) probably_damaging(1) TCGA-21-1070-01 12 6679785 6679785 C A CHD4 3'UTR 0.20 TCGA-21-1070-01 12 68619426 68619426 T G IL26 Silent p.T37T 0.23 TCGA-21-1070-01 12 7084422 7084422 C T EMG1 Missense_Mutation p.P167L 0.19 deleterious(0) TCGA-21-1070-01 12 71314168 71314168 C A PTPRR Translation_Start_Site p.M1? 0.21 deleterious_low_confidence(0) benign(0.002) TCGA-21-1070-01 12 72027088 72027088 T - ZFC3H1 Frame_Shift_Del p.I881Ffs*9 0.22 TCGA-21-1070-01 12 72070944 72070944 A G THAP2 3'UTR 0.18 TCGA-21-1070-01 12 72355423 72355423 G T TPH2 Intron 0.22 TCGA-21-1070-01 12 7241892 7241892 T A C1R Silent p.L254L 0.14 TCGA-21-1070-01 12 7843100 7843100 C A GDF3 Missense_Mutation p.G157C 0.35 deleterious(0.01) probably_damaging(0.948) TCGA-21-1070-01 12 7980133 7980133 G T SLC2A14 Silent p.S297S 0.19 TCGA-21-1070-01 12 85492717 85492717 G T LRRIQ1 Missense_Mutation p.A1052S 0.20 tolerated(0.51) benign(0.045) TCGA-21-1070-01 12 9256835 9256835 C T A2M Silent p.R422R 0.19 TCGA-21-1070-01 13 101707828 101707828 A T NALCN Missense_Mutation p.I1679K 0.17 tolerated(0.89) benign(0) TCGA-21-1070-01 13 101881753 101881753 C A NALCN Silent p.T539T 0.21 TCGA-21-1070-01 13 103520492 103520492 G T BIVM-ERCC5 Missense_Mutation p.A1281S 0.24 deleterious(0) probably_damaging(0.971) TCGA-21-1070-01 13 108861015 108861015 C A LIG4 Missense_Mutation p.D868Y 0.15 deleterious(0) possibly_damaging(0.663) TCGA-21-1070-01 13 114312455 114312455 G C ATP4B Missense_Mutation p.A2G 0.35 deleterious(0.01) probably_damaging(1) TCGA-21-1070-01 13 20279903 20279903 T C PSPC1 Missense_Mutation p.R429G 0.08 tolerated(0.13) possibly_damaging(0.587) TCGA-21-1070-01 13 25144769 25144769 A G RP11-556N21.1 RNA 0.07 TCGA-21-1070-01 13 28971177 28971177 G A FLT1 Missense_Mutation p.S527F 0.48 deleterious(0) possibly_damaging(0.892) TCGA-21-1070-01 13 48951037 48951052 GTTTTTACCTCCTAAA - RB1 Splice_Site p.X406_splice 0.16 TCGA-21-1070-01 13 49281473 49281473 C T CYSLTR2 Silent p.L174L 0.29 TCGA-21-1070-01 13 53608502 53608502 G T OLFM4 Missense_Mutation p.G75V 0.17 deleterious(0) possibly_damaging(0.75) TCGA-21-1070-01 13 58299162 58299162 T G PCDH17 Missense_Mutation p.L1072V 0.03 tolerated_low_confidence(0.26) benign(0.003) TCGA-21-1070-01 13 66878739 66878739 G T PCDH9 3'UTR 0.23 TCGA-21-1070-01 13 76301206 76301206 A G RP11-29G8.3 RNA 0.22 TCGA-21-1070-01 13 77460056 77460056 G C KCTD12 Missense_Mutation p.S76R 0.24 deleterious(0.03) benign(0.275) TCGA-21-1070-01 13 78177239 78177239 G T SCEL Missense_Mutation p.V356L 0.31 deleterious_low_confidence(0) benign(0.269) TCGA-21-1070-01 13 79940805 79940805 C T RBM26 Silent p.P366P 0.29 TCGA-21-1070-01 13 99099054 99099054 C T FARP1 Silent p.S1013S 0.24 TCGA-21-1070-01 13 99489850 99489850 C A DOCK9 Silent p.S1381S 0.12 TCGA-21-1070-01 14 101396322 101396322 G A SNORD113-3 RNA 0.37 TCGA-21-1070-01 14 102472281 102472281 T C DYNC1H1 Silent p.I1830I 0.15 TCGA-21-1070-01 14 103941431 103941431 A G MARK3 Missense_Mutation p.S456G 0.10 tolerated(0.47) benign(0) TCGA-21-1070-01 14 105739131 105739131 C A BRF1 Silent p.L122L 0.38 TCGA-21-1070-01 14 106053432 106053432 C T IGHA2 Missense_Mutation p.A289T 0.27 tolerated(0.08) benign(0.409) TCGA-21-1070-01 14 106173663 106173663 C T IGHA1 Missense_Mutation p.A302T 0.13 tolerated(0.07) possibly_damaging(0.825) TCGA-21-1070-01 14 19573144 19573144 G T POTEG Missense_Mutation p.K414N 0.09 deleterious(0.04) benign(0.024) TCGA-21-1070-01 14 20019999 20019999 C A POTEM Silent p.G74G 0.08 TCGA-21-1070-01 14 21993777 21993777 C A SALL2 Nonsense_Mutation p.E29* 0.11 TCGA-21-1070-01 14 22251606 22251608 GGA T TRAV7 Frame_Shift_Del p.G75Lfs*2 0.19 TCGA-21-1070-01 14 22265564 22265564 C A TRAV8-1 5'UTR 0.19 TCGA-21-1070-01 14 24523975 24523975 C T LRRC16B Missense_Mutation p.P140S 0.16 tolerated(0.15) probably_damaging(0.96) TCGA-21-1070-01 14 25102258 25102258 G A GZMB Silent p.I22I 0.15 TCGA-21-1070-01 14 31376206 31376206 C A STRN3 Missense_Mutation p.V589F 0.22 deleterious(0) probably_damaging(0.999) TCGA-21-1070-01 14 37717054 37717054 A C MIPOL1 5'UTR 0.15 TCGA-21-1070-01 14 44976081 44976081 C T FSCB Missense_Mutation p.S37N 0.13 tolerated(0.1) possibly_damaging(0.473) TCGA-21-1070-01 14 45414769 45414769 C A KLHL28 Silent p.L121L 0.19 TCGA-21-1070-01 14 45642255 45642255 A G FANCM Intron 0.08 TCGA-21-1070-01 14 47120628 47120628 G T RPL10L Silent p.S104S 0.21 TCGA-21-1070-01 14 47120629 47120629 G T RPL10L Missense_Mutation p.S104Y 0.21 deleterious(0) probably_damaging(0.958) TCGA-21-1070-01 14 50065836 50065836 G A LRR1 Missense_Mutation p.C33Y 0.12 deleterious(0.03) possibly_damaging(0.615) TCGA-21-1070-01 14 59112428 59112428 A T DACT1 Missense_Mutation p.N363Y 0.16 deleterious(0) possibly_damaging(0.837) TCGA-21-1070-01 14 68265178 68265178 C A ZFYVE26 Nonsense_Mutation p.E601* 0.19 TCGA-21-1070-01 14 68268906 68268906 G T ZFYVE26 Missense_Mutation p.A510D 0.15 deleterious(0) probably_damaging(0.999) TCGA-21-1070-01 14 74824129 74824129 C A VRTN Missense_Mutation p.P215T 0.13 tolerated(0.34) benign(0.04) TCGA-21-1070-01 14 75143291 75143291 G C AREL1 Missense_Mutation p.H216D 0.26 tolerated(0.2) benign(0.026) TCGA-21-1070-01 14 75537471 75537471 G A ZC2HC1C Silent p.L65L 0.28 TCGA-21-1070-01 14 88477477 88477477 A C GPR65 Missense_Mutation p.M96L 0.26 tolerated(0.68) benign(0.005) TCGA-21-1070-01 14 88729855 88729855 G T KCNK10 Missense_Mutation p.S31R 0.24 tolerated_low_confidence(0.21) benign(0.001) TCGA-21-1070-01 14 92908488 92908488 C A SLC24A4 Nonsense_Mutation p.S150* 0.10 TCGA-21-1070-01 14 96152930 96152930 G T TCL1B Silent p.S42S 0.18 TCGA-21-1070-01 14 96769593 96769593 C A ATG2B Splice_Site p.X1615_splice 0.10 TCGA-21-1070-01 15 23812394 23812394 G T MKRN3 Nonsense_Mutation p.E489* 0.17 TCGA-21-1070-01 15 23889635 23889635 G - MAGEL2 Frame_Shift_Del p.H482Qfs*21 0.21 TCGA-21-1070-01 15 25326342 25326342 C A SNORD116-12 3'Flank 0.26 TCGA-21-1070-01 15 25326343 25326343 C A SNORD116-12 3'Flank 0.28 TCGA-21-1070-01 15 25456996 25456996 T A SNORD115-23 RNA 0.20 TCGA-21-1070-01 15 25467375 25467375 C G SNORD115-27 3'Flank 0.28 TCGA-21-1070-01 15 25650618 25650618 C A UBE3A Missense_Mutation p.A21S 0.18 tolerated(0.71) benign(0.001) TCGA-21-1070-01 15 28478393 28478393 C A HERC2 Missense_Mutation p.C1525F 0.11 benign(0.087) TCGA-21-1070-01 15 29993840 29993840 C A TJP1 Missense_Mutation p.V1736F 0.21 deleterious(0) probably_damaging(0.999) TCGA-21-1070-01 15 35085701 35085701 G T ACTC1 Missense_Mutation p.L67M 0.37 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-21-1070-01 15 40462291 40462291 A T BUB1B Missense_Mutation p.T70S 0.28 tolerated(1) benign(0.002) TCGA-21-1070-01 15 50264859 50264859 T A ATP8B4 Missense_Mutation p.Y388F 0.25 tolerated(0.06) probably_damaging(0.993) TCGA-21-1070-01 15 53049925 53049925 G T ONECUT1 Missense_Mutation p.R409S 0.30 deleterious(0) probably_damaging(1) TCGA-21-1070-01 15 74468267 74468267 G A ISLR Silent p.G356G 0.07 TCGA-21-1070-01 15 77906817 77906817 G T LINGO1 Missense_Mutation p.P478T 0.23 tolerated(0.11) benign(0.04) TCGA-21-1070-01 15 83808016 83808016 T C HDGFRP3 3'UTR 0.17 TCGA-21-1070-01 15 84651418 84651418 G T ADAMTSL3 Missense_Mutation p.R1013M 0.21 tolerated(0.17) benign(0.004) TCGA-21-1070-01 15 85326964 85326964 G T ZNF592 Missense_Mutation p.C353F 0.32 deleterious(0) probably_damaging(0.999) TCGA-21-1070-01 15 93563556 93563556 C T CHD2 Intron 0.10 TCGA-21-1070-01 16 15729647 15729647 C A KIAA0430 Missense_Mutation p.A233S 0.36 tolerated_low_confidence(0.11) benign(0.028) TCGA-21-1070-01 16 20996449 20996449 C T DNAH3 Missense_Mutation p.E2539K 0.29 tolerated(1) benign(0.001) TCGA-21-1070-01 16 22358122 22358122 C A CDR2 3'UTR 0.30 TCGA-21-1070-01 16 25238398 25238398 G T AQP8 Silent p.V204V 0.33 TCGA-21-1070-01 16 27733015 27733015 G C KIAA0556 Missense_Mutation p.G581A 0.26 tolerated(0.1) possibly_damaging(0.452) TCGA-21-1070-01 16 27802692 27802692 C A GSG1L Nonstop_Mutation p.*332Lext*35 0.22 TCGA-21-1070-01 16 28986619 28986619 C T SPNS1 Silent p.R49R 0.36 TCGA-21-1070-01 16 30532878 30532878 C A ITGAL Silent p.I1135I 0.30 TCGA-21-1070-01 16 31419090 31419090 G T ITGAD Nonsense_Mutation p.G288* 0.35 TCGA-21-1070-01 16 32265003 32265003 G T TP53TG3D Missense_Mutation p.W110L 0.15 tolerated_low_confidence(0.29) possibly_damaging(0.504) TCGA-21-1070-01 16 53326832 53326832 A T CHD9 Missense_Mutation p.Q1793L 0.30 probably_damaging(0.999) TCGA-21-1070-01 16 61761073 61761073 C T CDH8 Silent p.L487L 0.31 TCGA-21-1070-01 16 71019216 71019216 G A HYDIN Missense_Mutation p.H1402Y 0.41 benign(0.143) TCGA-21-1070-01 16 89924792 89924792 C T SPIRE2 Silent p.A383A 0.32 TCGA-21-1070-01 17 10204986 10204986 C A MYH13 Missense_Mutation p.R1901L 0.39 deleterious(0) benign(0.222) TCGA-21-1070-01 17 15968834 15968834 T C NCOR1 Missense_Mutation p.E1639G 0.16 benign(0.37) TCGA-21-1070-01 17 32956181 32956181 G C TMEM132E Silent p.T342T 0.20 TCGA-21-1070-01 17 32959860 32959860 C T TMEM132E Silent p.H450H 0.25 TCGA-21-1070-01 17 33586457 33586457 A T SLFN5 Missense_Mutation p.S250C 0.25 deleterious(0.01) possibly_damaging(0.799) TCGA-21-1070-01 17 38572996 38572996 G T TOP2A Missense_Mutation p.T58N 0.25 deleterious(0.02) benign(0.367) TCGA-21-1070-01 17 42084855 42084855 T G NAGS Missense_Mutation p.S421A 0.27 deleterious(0.02) probably_damaging(0.992) TCGA-21-1070-01 17 51901108 51901108 C A KIF2B Silent p.V238V 0.25 TCGA-21-1070-01 17 7577548 7577548 C A TP53 Missense_Mutation p.G245C 0.23 deleterious(0) probably_damaging(1) TCGA-21-1070-01 17 79639558 79639558 C G CCDC137 Missense_Mutation p.L232V 0.40 deleterious(0.04) benign(0.187) TCGA-21-1070-01 18 14542950 14542950 G T POTEC Missense_Mutation p.H66N 0.11 tolerated_low_confidence(0.77) benign(0.009) TCGA-21-1070-01 18 14542951 14542951 G T POTEC Nonsense_Mutation p.C65* 0.11 TCGA-21-1070-01 18 24056539 24056539 C A KCTD1 Missense_Mutation p.M83I 0.29 tolerated(0.31) benign(0.042) TCGA-21-1070-01 18 28723718 28723718 C T DSC1 Missense_Mutation p.D326N 0.31 deleterious(0) probably_damaging(0.998) TCGA-21-1070-01 18 3582091 3582091 G T DLGAP1 Missense_Mutation p.Q583K 0.30 tolerated(0.16) benign(0.285) TCGA-21-1070-01 18 3582092 3582092 G A DLGAP1 Silent p.S582S 0.30 TCGA-21-1070-01 18 47796151 47796151 T C MBD1 Missense_Mutation p.K606E 0.29 tolerated_low_confidence(0.14) benign(0.167) TCGA-21-1070-01 18 71825704 71825704 C G TIMM21 Missense_Mutation p.Q246E 0.12 tolerated(0.37) benign(0.002) TCGA-21-1070-01 19 12758128 12758128 T C MAN2B1 Missense_Mutation p.I948V 0.34 tolerated(0.2) benign(0.371) TCGA-21-1070-01 19 14748941 14748941 G T EMR3 Missense_Mutation p.P487H 0.29 tolerated(0.19) probably_damaging(0.976) TCGA-21-1070-01 19 15572071 15572071 C A RASAL3 Nonsense_Mutation p.E168* 0.22 TCGA-21-1070-01 19 20727663 20727663 C - ZNF737 Frame_Shift_Del p.G449Efs*81 0.13 TCGA-21-1070-01 19 22157333 22157333 G T ZNF208 Missense_Mutation p.T168N 0.25 tolerated(0.08) benign(0.382) TCGA-21-1070-01 19 31039975 31039975 C T ZNF536 Missense_Mutation p.P1150L 0.16 deleterious_low_confidence(0.01) benign(0.118) TCGA-21-1070-01 19 33392320 33392320 T A CEP89 Splice_Site p.X522_splice 0.24 TCGA-21-1070-01 19 3600005 3600005 G T TBXA2R Missense_Mutation p.L210M 0.44 tolerated(0.08) benign(0.326) TCGA-21-1070-01 19 37211129 37211129 A G ZNF567 Silent p.G470G 0.15 TCGA-21-1070-01 19 39212286 39212286 A G ACTN4 Missense_Mutation p.Q467R 0.23 deleterious(0) probably_damaging(0.961) TCGA-21-1070-01 19 39786990 39786990 C G IFNL1 5'UTR 0.29 TCGA-21-1070-01 19 40382754 40382754 C T FCGBP Missense_Mutation p.V3378M 0.26 possibly_damaging(0.867) TCGA-21-1070-01 19 41097083 41097083 C T SHKBP1 Silent p.P698P 0.17 TCGA-21-1070-01 19 41626392 41626392 A G CYP2F1 Missense_Mutation p.K159E 0.19 deleterious(0.03) benign(0.063) TCGA-21-1070-01 19 422160 422160 C A SHC2 Missense_Mutation p.D536Y 0.33 deleterious(0) probably_damaging(1) TCGA-21-1070-01 19 422161 422161 C A SHC2 Silent p.V535V 0.33 TCGA-21-1070-01 19 45029205 45029205 G T CEACAM20 RNA 0.28 TCGA-21-1070-01 19 45489736 45489736 G T CLPTM1 Silent p.V232V 0.22 TCGA-21-1070-01 19 45489737 45489737 G T CLPTM1 Nonsense_Mutation p.E233* 0.21 TCGA-21-1070-01 19 47278668 47278668 G A SLC1A5 3'UTR 0.17 TCGA-21-1070-01 19 52219607 52219607 A T HAS1 Silent p.L321L 0.08 TCGA-21-1070-01 19 54140201 54140201 G T DPRX Missense_Mutation p.G179C 0.20 tolerated(0.1) benign(0.237) TCGA-21-1070-01 19 55085922 55085922 G C LILRA2 Missense_Mutation p.E75D 0.38 tolerated(0.2) benign(0.052) TCGA-21-1070-01 19 55148200 55148200 C A LILRB1 Silent p.A610A 0.22 TCGA-21-1070-01 19 55220583 55220583 G A AC098784.2 3'Flank 0.33 TCGA-21-1070-01 19 55624120 55624120 T A PPP1R12C Missense_Mutation p.E122V 0.25 deleterious(0) probably_damaging(0.997) TCGA-21-1070-01 19 56372885 56372885 C A NLRP4 Missense_Mutation p.H664N 0.18 tolerated(0.34) benign(0.055) TCGA-21-1070-01 19 58118761 58118761 G T ZNF530 3'UTR 0.19 TCGA-21-1070-01 19 8175791 8175791 C A FBN3 Missense_Mutation p.G1424V 0.36 deleterious(0) probably_damaging(0.955) TCGA-21-1070-01 19 8808488 8808488 G A ACTL9 Silent p.H188H 0.39 TCGA-21-1070-01 19 9062542 9062542 G T MUC16 Missense_Mutation p.P8302T 0.29 unknown(0) TCGA-21-1070-01 19 9362644 9362644 A G OR7E24 Missense_Mutation p.S309G 0.29 deleterious(0) possibly_damaging(0.839) TCGA-21-1070-01 1 109319046 109319046 G C STXBP3 Splice_Site p.X228_splice 0.17 TCGA-21-1070-01 1 111966324 111966324 G T OVGP1 Silent p.T108T 0.08 TCGA-21-1070-01 1 120512257 120512257 C A NOTCH2 Missense_Mutation p.G329C 0.08 deleterious(0) probably_damaging(1) TCGA-21-1070-01 1 12726619 12726619 G C AADACL4 Missense_Mutation p.R366P 0.06 tolerated(1) benign(0.001) TCGA-21-1070-01 1 13498242 13498242 C T PRAMEF16 3'UTR 0.68 TCGA-21-1070-01 1 144995019 144995019 G C PDE4DIP 5'UTR 0.07 TCGA-21-1070-01 1 145563028 145563028 G C ANKRD35 Missense_Mutation p.E906Q 0.23 tolerated(0.23) benign(0.113) TCGA-21-1070-01 1 150936113 150936113 G C SETDB1 Missense_Mutation p.E1189Q 0.09 tolerated(0.15) possibly_damaging(0.843) TCGA-21-1070-01 1 150940899 150940899 T C CERS2 Missense_Mutation p.Y88C 0.26 deleterious(0) probably_damaging(0.989) TCGA-21-1070-01 1 152127228 152127228 G T RPTN Missense_Mutation p.Q783K 0.22 tolerated(0.12) benign(0.018) TCGA-21-1070-01 1 152186764 152186764 A G HRNR Silent p.R2447R 0.18 TCGA-21-1070-01 1 152192255 152192255 G A HRNR Missense_Mutation p.S617L 0.26 unknown(0) TCGA-21-1070-01 1 152328470 152328470 A T FLG2 Missense_Mutation p.S598T 0.24 unknown(0) TCGA-21-1070-01 1 152595457 152595465 GGGCCCACA - LCE3A In_Frame_Del p.C39_P41del 0.27 TCGA-21-1070-01 1 154316387 154316387 C T ATP8B2 Silent p.L626L 0.24 TCGA-21-1070-01 1 156352620 156352620 T C RHBG Silent p.F398F 0.22 TCGA-21-1070-01 1 158389791 158389791 A G OR10K2 Missense_Mutation p.I289T 0.23 deleterious(0) possibly_damaging(0.616) TCGA-21-1070-01 1 158517456 158517456 C G OR6Y1 Missense_Mutation p.G147A 0.18 tolerated(0.56) benign(0.014) TCGA-21-1070-01 1 158617474 158617474 C T SPTA1 Missense_Mutation p.E1251K 0.20 tolerated(0.16) benign(0.094) TCGA-21-1070-01 1 158653176 158653176 G T SPTA1 Silent p.A125A 0.25 TCGA-21-1070-01 1 158908901 158908901 G C PYHIN1 Missense_Mutation p.G148A 0.29 tolerated(0.32) benign(0.268) TCGA-21-1070-01 1 159283906 159283906 C A OR10J3 Missense_Mutation p.V182L 0.20 deleterious(0.03) benign(0.119) TCGA-21-1070-01 1 160769666 160769666 C A LY9 Missense_Mutation p.P83H 0.15 deleterious(0.04) probably_damaging(0.979) TCGA-21-1070-01 1 161160912 161160912 A T ADAMTS4 3'UTR 0.20 TCGA-21-1070-01 1 165380292 165380292 C T RXRG Missense_Mutation p.C226Y 0.19 tolerated(0.07) benign(0) TCGA-21-1070-01 1 167097814 167097814 G T DUSP27 Missense_Mutation p.R1149M 0.24 deleterious(0) possibly_damaging(0.789) TCGA-21-1070-01 1 170959017 170959017 A C MROH9 Missense_Mutation p.I301L 0.19 deleterious(0) probably_damaging(0.998) TCGA-21-1070-01 1 173883815 173883815 T C SERPINC1 Missense_Mutation p.Y95C 0.26 deleterious(0) probably_damaging(1) TCGA-21-1070-01 1 175092565 175092565 G A TNN Missense_Mutation p.D894N 0.21 tolerated(0.25) benign(0.015) TCGA-21-1070-01 1 175335049 175335049 C G TNR Missense_Mutation p.R760P 0.29 deleterious(0.02) probably_damaging(0.997) TCGA-21-1070-01 1 177199140 177199140 C A BRINP2 Missense_Mutation p.P43H 0.21 tolerated_low_confidence(0.14) benign(0.21) TCGA-21-1070-01 1 178490566 178490566 G A TEX35 Intron 0.15 TCGA-21-1070-01 1 178514779 178514779 G T C1ORF220 Missense_Mutation p.W55C 0.28 benign(0) TCGA-21-1070-01 1 180235536 180235536 C A LHX4 Silent p.G86G 0.24 TCGA-21-1070-01 1 181680124 181680124 C A CACNA1E Silent p.R364R 0.13 TCGA-21-1070-01 1 186277377 186277377 T A PRG4 Silent p.P842P 0.21 TCGA-21-1070-01 1 190250753 190250753 G T BRINP3 Missense_Mutation p.Q122K 0.19 tolerated(0.09) benign(0.01) TCGA-21-1070-01 1 201839870 201839870 C T IPO9 Missense_Mutation p.R765C 0.22 deleterious(0) probably_damaging(0.995) TCGA-21-1070-01 1 202888999 202888999 C G KLHL12 Missense_Mutation p.G78A 0.20 deleterious(0.03) probably_damaging(0.961) TCGA-21-1070-01 1 205495906 205495906 A T CDK18 Missense_Mutation p.S254C 0.22 deleterious(0.05) benign(0.029) TCGA-21-1070-01 1 205632558 205632558 C G SLC45A3 Missense_Mutation p.E121Q 0.36 tolerated(0.35) benign(0.241) TCGA-21-1070-01 1 220088657 220088657 C G SLC30A10 3'UTR 0.27 TCGA-21-1070-01 1 222843112 222843112 C T AIDA 3'UTR 0.60 TCGA-21-1070-01 1 232561495 232561495 C G SIPA1L2 Missense_Mutation p.E1490D 0.06 deleterious(0) probably_damaging(0.998) TCGA-21-1070-01 1 232942722 232942722 G T MAP10 Silent p.L651L 0.17 TCGA-21-1070-01 1 237494253 237494253 C A RYR2 Missense_Mutation p.L82M 0.19 probably_damaging(0.987) TCGA-21-1070-01 1 237608766 237608766 A T RYR2 Missense_Mutation p.E412D 0.16 probably_damaging(0.991) TCGA-21-1070-01 1 237753297 237753298 - AA RYR2 Frame_Shift_Ins p.E1269Kfs*3 0.21 TCGA-21-1070-01 1 238045744 238045744 C G ZP4 Missense_Mutation p.C534S 0.22 tolerated_low_confidence(0.09) benign(0) TCGA-21-1070-01 1 238090855 238090855 G A RP11-193H5.1 RNA 0.19 TCGA-21-1070-01 1 241758132 241758132 T A KMO 3'UTR 0.50 TCGA-21-1070-01 1 247588146 247588146 G C NLRP3 Missense_Mutation p.W467C 0.19 deleterious(0) possibly_damaging(0.447) TCGA-21-1070-01 1 247920935 247920935 G C OR1C1 Silent p.V258V 0.15 TCGA-21-1070-01 1 248550957 248550957 G T OR2T6 Silent p.G16G 0.15 TCGA-21-1070-01 1 248551209 248551209 G T OR2T6 Missense_Mutation p.Q100H 0.22 deleterious(0) probably_damaging(0.982) TCGA-21-1070-01 1 248737471 248737471 G C OR2T34 Missense_Mutation p.D196E 0.11 deleterious(0.01) possibly_damaging(0.636) TCGA-21-1070-01 1 27709155 27709155 T A CD164L2 Nonsense_Mutation p.K31* 0.41 TCGA-21-1070-01 1 32504202 32504202 A G KHDRBS1 Missense_Mutation p.Y386C 0.09 deleterious(0.02) probably_damaging(0.941) TCGA-21-1070-01 1 33987099 33987099 C A CSMD2 Missense_Mutation p.G3377C 0.21 deleterious(0) probably_damaging(0.933) TCGA-21-1070-01 1 33987100 33987100 C A CSMD2 Missense_Mutation p.K3376N 0.20 tolerated(0.12) benign(0.011) TCGA-21-1070-01 1 34038220 34038220 T A CSMD2 Nonsense_Mutation p.K2552* 0.36 TCGA-21-1070-01 1 34666588 34666588 C A C1orf94 Missense_Mutation p.P409T 0.69 deleterious_low_confidence(0) benign(0.137) TCGA-21-1070-01 1 40947448 40947448 G C ZFP69 Missense_Mutation p.Q47H 0.05 tolerated(0.14) benign(0.002) TCGA-21-1070-01 1 44435983 44435983 G T DPH2 Missense_Mutation p.G46W 0.31 deleterious(0) possibly_damaging(0.664) TCGA-21-1070-01 1 51829589 51829589 C A EPS15 Missense_Mutation p.A770S 0.09 deleterious(0.03) benign(0.296) TCGA-21-1070-01 1 53569103 53569103 C A SLC1A7 Silent p.P204P 0.37 TCGA-21-1070-01 1 63064458 63064458 T A ANGPTL3 Missense_Mutation p.I196K 0.10 deleterious(0) probably_damaging(0.98) TCGA-21-1070-01 1 71477951 71477951 G C PTGER3 Intron 0.30 TCGA-21-1070-01 1 75693523 75693523 C G SLC44A5 Missense_Mutation p.Q291H 0.31 tolerated(0.12) benign(0.008) TCGA-21-1070-01 1 84967627 84967627 T A GNG5 Missense_Mutation p.K36N 0.20 tolerated(0.12) possibly_damaging(0.609) TCGA-21-1070-01 1 86523622 86523622 C T COL24A1 Missense_Mutation p.G615S 0.19 deleterious(0) probably_damaging(1) TCGA-21-1070-01 1 86529415 86529415 C T COL24A1 Missense_Mutation p.G579R 0.05 deleterious(0) probably_damaging(1) TCGA-21-1070-01 20 18005510 18005510 C A OVOL2 Missense_Mutation p.V200L 0.24 deleterious(0) possibly_damaging(0.638) TCGA-21-1070-01 20 18474619 18474619 C T RBBP9 Silent p.G77G 0.29 TCGA-21-1070-01 20 1961062 1961062 C G PDYN Missense_Mutation p.K224N 0.22 deleterious(0) probably_damaging(1) TCGA-21-1070-01 20 20177337 20177337 A G C20orf26 Missense_Mutation p.K572E 0.19 deleterious(0) possibly_damaging(0.561) TCGA-21-1070-01 20 20278834 20278834 C A C20orf26 Missense_Mutation p.L1076I 0.30 tolerated(1) benign(0.001) TCGA-21-1070-01 20 21695287 21695287 C G PAX1 Missense_Mutation p.T484R 0.38 deleterious_low_confidence(0.01) benign(0) TCGA-21-1070-01 20 2474489 2474489 A - ZNF343 Frame_Shift_Del p.L18Cfs*9 0.19 TCGA-21-1070-01 20 2796440 2796440 C A C20orf141 3'UTR 0.20 TCGA-21-1070-01 20 31671617 31671617 G T BPIFB4 Missense_Mutation p.G205V 0.27 deleterious(0) probably_damaging(0.965) TCGA-21-1070-01 20 3678513 3678513 C A SIGLEC1 Missense_Mutation p.G685V 0.23 deleterious(0) probably_damaging(1) TCGA-21-1070-01 20 40714482 40714482 C A PTPRT Missense_Mutation p.Q1286H 0.18 deleterious(0) possibly_damaging(0.745) TCGA-21-1070-01 20 43804748 43804748 G A PI3 Missense_Mutation p.C109Y 0.22 deleterious(0) probably_damaging(1) TCGA-21-1070-01 20 57245631 57245631 A T STX16 Missense_Mutation p.D207V 0.18 deleterious(0) benign(0.097) TCGA-21-1070-01 20 57474005 57474005 A G GNAS Silent p.E717E 0.07 TCGA-21-1070-01 20 5988012 5988012 T G CRLS1 Intron 0.29 TCGA-21-1070-01 20 61982241 61982241 G T CHRNA4 Missense_Mutation p.N174K 0.22 deleterious(0) probably_damaging(0.999) TCGA-21-1070-01 20 7886921 7886921 C A HAO1 Missense_Mutation p.D201Y 0.27 deleterious(0) benign(0.247) TCGA-21-1070-01 20 9546740 9546740 A G PAK7 Missense_Mutation p.S428P 0.20 deleterious(0.04) probably_damaging(0.973) TCGA-21-1070-01 21 11038996 11038996 T A BAGE2 RNA 0.05 TCGA-21-1070-01 21 34948765 34948765 C T SON 3'UTR 0.27 TCGA-21-1070-01 21 37665978 37665978 C A DOPEY2 3'UTR 0.34 TCGA-21-1070-01 21 37665979 37665979 C T DOPEY2 3'UTR 0.35 TCGA-21-1070-01 21 43519149 43519149 G T UMODL1 Missense_Mutation p.G349C 0.28 deleterious(0) probably_damaging(0.942) TCGA-21-1070-01 21 45564780 45564780 T C C21orf33 Silent p.H252H 0.35 TCGA-21-1070-01 21 47551972 47551972 G T COL6A2 Missense_Mutation p.V856L 0.33 tolerated(0.1) benign(0.228) TCGA-21-1070-01 22 20819581 20819581 G A KLHL22 Nonsense_Mutation p.Q226* 0.22 TCGA-21-1070-01 22 23742289 23742289 G A ZDHHC8P1 RNA 0.16 TCGA-21-1070-01 22 26422656 26422656 C G MYO18B Missense_Mutation p.S2239W 0.29 deleterious(0.02) probably_damaging(0.913) TCGA-21-1070-01 22 30951750 30951750 C T GAL3ST1 Silent p.P154P 0.25 TCGA-21-1070-01 22 32849427 32849427 C A BPIFC Missense_Mutation p.S63I 0.23 tolerated(0.06) benign(0.003) TCGA-21-1070-01 22 35463085 35463085 G T ISX Missense_Mutation p.C2F 0.28 deleterious_low_confidence(0) benign(0.068) TCGA-21-1070-01 22 43563307 43563307 C T TTLL12 3'UTR 0.43 TCGA-21-1070-01 22 44330490 44330490 T C PNPLA3 Missense_Mutation p.L234P 0.29 deleterious(0) probably_damaging(0.962) TCGA-21-1070-01 22 46657974 46657974 G T PKDREJ Missense_Mutation p.L416M 0.33 tolerated(0.12) probably_damaging(0.996) TCGA-21-1070-01 2 102988470 102988470 C T IL18R1 Silent p.F120F 0.26 TCGA-21-1070-01 2 109381368 109381368 A G RANBP2 Missense_Mutation p.K1458R 0.26 tolerated(0.09) probably_damaging(0.925) TCGA-21-1070-01 2 112786338 112786338 G T MERTK Missense_Mutation p.G966V 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.747) TCGA-21-1070-01 2 113590343 113590343 G A IL1B Missense_Mutation p.S121L 0.28 tolerated(0.19) benign(0.255) TCGA-21-1070-01 2 113890579 113890579 G T IL1RN 3'UTR 0.21 TCGA-21-1070-01 2 122004446 122004446 C A TFCP2L1 Missense_Mutation p.G202V 0.11 deleterious(0.03) probably_damaging(1) TCGA-21-1070-01 2 122514890 122514890 G T TSN Missense_Mutation p.Q47H 0.22 tolerated(0.18) benign(0.053) TCGA-21-1070-01 2 124999829 124999829 G T CNTNAP5 Missense_Mutation p.M80I 0.17 tolerated(0.78) benign(0.001) TCGA-21-1070-01 2 124999830 124999830 G T CNTNAP5 Missense_Mutation p.D81Y 0.17 deleterious(0) probably_damaging(0.984) TCGA-21-1070-01 2 125405502 125405502 C A CNTNAP5 Missense_Mutation p.H681N 0.20 tolerated(0.2) benign(0.306) TCGA-21-1070-01 2 128335741 128335741 G T MYO7B Missense_Mutation p.A295S 0.16 tolerated(0.2) benign(0.098) TCGA-21-1070-01 2 141253223 141253223 C A LRP1B Missense_Mutation p.C2982F 0.22 benign(0.308) TCGA-21-1070-01 2 149806919 149806919 G C KIF5C Missense_Mutation p.C304S 0.44 deleterious(0) probably_damaging(0.997) TCGA-21-1070-01 2 149840133 149840133 G T KIF5C Splice_Site p.X524_splice 0.29 TCGA-21-1070-01 2 152325193 152325193 A G RIF1 Silent p.T2288T 0.25 TCGA-21-1070-01 2 153192099 153192099 G A FMNL2 5'UTR 0.13 TCGA-21-1070-01 2 158406731 158406731 G T ACVR1C Missense_Mutation p.Q240K 0.19 deleterious(0) probably_damaging(0.967) TCGA-21-1070-01 2 1652031 1652031 C A PXDN Missense_Mutation p.R1174M 0.16 deleterious(0) probably_damaging(0.999) TCGA-21-1070-01 2 166770088 166770088 A G TTC21B Missense_Mutation p.L736P 0.15 deleterious(0) benign(0.309) TCGA-21-1070-01 2 167085253 167085253 A T SCN9A Missense_Mutation p.L1374Q 0.12 deleterious(0.01) possibly_damaging(0.677) TCGA-21-1070-01 2 170150710 170150710 A G LRP2 Silent p.Y200Y 0.12 TCGA-21-1070-01 2 175624292 175624292 A T CHRNA1 Missense_Mutation p.V38E 0.11 tolerated(0.08) probably_damaging(0.975) TCGA-21-1070-01 2 175939423 175939423 T A ATF2 Missense_Mutation p.T478S 0.24 tolerated(0.19) benign(0.001) TCGA-21-1070-01 2 178494266 178494266 G C PDE11A Missense_Mutation p.L891V 0.35 deleterious(0.01) possibly_damaging(0.874) TCGA-21-1070-01 2 17902509 17902509 C A SMC6 Missense_Mutation p.R249L 0.08 tolerated(0.17) benign(0.015) TCGA-21-1070-01 2 179399048 179399048 G C TTN Missense_Mutation p.I34098M 0.11 TCGA-21-1070-01 2 179449428 179449428 G T TTN Missense_Mutation p.T21647K 0.11 TCGA-21-1070-01 2 179730587 179730587 C G CCDC141 Missense_Mutation p.E877D 0.28 tolerated(0.36) benign(0.098) TCGA-21-1070-01 2 182423307 182423307 C G CERKL Missense_Mutation p.G295A 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-21-1070-01 2 185802007 185802007 A G ZNF804A Silent p.E628E 0.23 TCGA-21-1070-01 2 189901512 189901512 G T COL5A2 Missense_Mutation p.P1315T 0.15 unknown(0) TCGA-21-1070-01 2 196728947 196728947 T C DNAH7 Missense_Mutation p.I2478V 0.22 deleterious(0.02) benign(0.433) TCGA-21-1070-01 2 196756469 196756469 C A DNAH7 Missense_Mutation p.M1652I 0.27 deleterious(0.03) benign(0.091) TCGA-21-1070-01 2 197593928 197593928 C T CCDC150 Silent p.A856A 0.13 TCGA-21-1070-01 2 198498558 198498558 G T RFTN2 Missense_Mutation p.T201K 0.17 tolerated(0.31) possibly_damaging(0.511) TCGA-21-1070-01 2 207460779 207460779 G T ADAM23 Missense_Mutation p.C751F 0.15 deleterious(0) probably_damaging(0.999) TCGA-21-1070-01 2 209138764 209138764 C T PIKFYVE Intron 0.18 TCGA-21-1070-01 2 211502425 211502425 G A CPS1 Splice_Site p.X902_splice 0.17 TCGA-21-1070-01 2 21246424 21246424 C G APOB Missense_Mutation p.K859N 0.11 probably_damaging(0.998) TCGA-21-1070-01 2 215645361 215645361 C T BARD1 Missense_Mutation p.A413T 0.14 tolerated(0.42) benign(0.003) TCGA-21-1070-01 2 219602936 219602936 A C TTLL4 Silent p.T179T 0.33 TCGA-21-1070-01 2 220144589 220144589 C G DNAJB2 Missense_Mutation p.R12G 0.09 deleterious(0) benign(0.248) TCGA-21-1070-01 2 238461036 238461036 A T MLPH Nonsense_Mutation p.R578* 0.16 TCGA-21-1070-01 2 241078527 241078527 C A OTOS 3'UTR 0.26 TCGA-21-1070-01 2 242815303 242815303 C T CXXC11 Silent p.A532A 0.31 TCGA-21-1070-01 2 27156171 27156171 G C DPYSL5 Missense_Mutation p.G254R 0.08 deleterious(0.01) probably_damaging(0.955) TCGA-21-1070-01 2 27545374 27545374 C A MPV17 Missense_Mutation p.W4L 0.09 deleterious(0.04) probably_damaging(0.999) TCGA-21-1070-01 2 27565913 27565913 G T GTF3C2 Missense_Mutation p.P117T 0.15 tolerated(0.49) benign(0.022) TCGA-21-1070-01 2 27799431 27799431 G A C2orf16 5'UTR 0.43 TCGA-21-1070-01 2 27884013 27884013 T C SUPT7L Missense_Mutation p.Q86R 0.08 deleterious(0.02) possibly_damaging(0.69) TCGA-21-1070-01 2 32774500 32774500 C G BIRC6 Missense_Mutation p.Q4366E 0.04 possibly_damaging(0.791) TCGA-21-1070-01 2 37543626 37543626 T C PRKD3 Silent p.V14V 0.13 TCGA-21-1070-01 2 42588252 42588252 G T COX7A2L Missense_Mutation p.A17D 0.09 tolerated(0.09) probably_damaging(0.998) TCGA-21-1070-01 2 44101029 44101029 G T ABCG8 Missense_Mutation p.G439W 0.38 deleterious(0) probably_damaging(0.993) TCGA-21-1070-01 2 48066854 48066854 T C FBXO11 Missense_Mutation p.N96S 0.16 tolerated_low_confidence(0.27) benign(0.002) TCGA-21-1070-01 2 48925804 48925804 C A LHCGR Silent p.T272T 0.34 TCGA-21-1070-01 2 56420411 56420411 C G CCDC85A Missense_Mutation p.P359R 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-21-1070-01 2 68794484 68794484 A T APLF Missense_Mutation p.Q433L 0.20 deleterious(0) probably_damaging(0.999) TCGA-21-1070-01 2 71060794 71060794 T C CD207 Missense_Mutation p.K183R 0.26 tolerated(0.08) benign(0.01) TCGA-21-1070-01 2 71061107 71061107 G C CD207 Missense_Mutation p.Q79E 0.16 tolerated(0.07) benign(0.015) TCGA-21-1070-01 2 71148347 71148347 C A VAX2 Missense_Mutation p.R123S 0.18 deleterious(0.01) possibly_damaging(0.607) TCGA-21-1070-01 2 71591167 71591167 C T ZNF638 Missense_Mutation p.S501L 0.09 deleterious(0) possibly_damaging(0.577) TCGA-21-1070-01 2 71839822 71839822 G T DYSF Missense_Mutation p.D1425Y 0.19 deleterious(0) probably_damaging(1) TCGA-21-1070-01 2 74710189 74710189 G T CCDC142 5'Flank 0.19 TCGA-21-1070-01 2 85573109 85573109 C A RETSAT Missense_Mutation p.R369L 0.18 tolerated(0.06) benign(0.027) TCGA-21-1070-01 2 89292131 89292131 C A IGKV1-8 Missense_Mutation p.G48C 0.19 deleterious(0.01) possibly_damaging(0.744) TCGA-21-1070-01 2 89999438 89999438 C A IGKV2D-28 Silent p.A80A 0.07 TCGA-21-1070-01 2 90248923 90248923 G T IGKV1D-43 Missense_Mutation p.D2Y 0.15 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-21-1070-01 2 97365350 97365350 C A FER1L5 RNA 0.22 TCGA-21-1070-01 2 99697854 99697854 C A TSGA10 Missense_Mutation p.L206F 0.18 deleterious(0.03) possibly_damaging(0.515) TCGA-21-1070-01 3 107447613 107447613 A G BBX Missense_Mutation p.Y136C 0.26 deleterious(0) probably_damaging(0.94) TCGA-21-1070-01 3 108133227 108133227 C A MYH15 Missense_Mutation p.D1353Y 0.23 deleterious(0) probably_damaging(0.975) TCGA-21-1070-01 3 112198582 112198582 C A BTLA Missense_Mutation p.K41N 0.26 tolerated(0.08) possibly_damaging(0.528) TCGA-21-1070-01 3 113652396 113652396 G T GRAMD1C Missense_Mutation p.L416F 0.24 deleterious(0.02) benign(0.361) TCGA-21-1070-01 3 113652397 113652397 G T GRAMD1C Missense_Mutation p.V417L 0.23 deleterious(0) possibly_damaging(0.53) TCGA-21-1070-01 3 115738364 115738364 G T LSAMP Missense_Mutation p.T171N 0.20 tolerated(0.41) possibly_damaging(0.484) TCGA-21-1070-01 3 118621725 118621725 G A IGSF11 Missense_Mutation p.S313F 0.18 deleterious(0) probably_damaging(0.999) TCGA-21-1070-01 3 121980430 121980430 T A CASR Missense_Mutation p.F183Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-21-1070-01 3 127648994 127648994 G A KBTBD12 Missense_Mutation p.E454K 0.29 deleterious(0.02) probably_damaging(1) TCGA-21-1070-01 3 130437364 130437364 G A PIK3R4 Missense_Mutation p.H666Y 0.23 deleterious(0) probably_damaging(0.998) TCGA-21-1070-01 3 133098644 133098644 A G TMEM108 Missense_Mutation p.Q30R 0.21 deleterious_low_confidence(0.01) benign(0.117) TCGA-21-1070-01 3 148928125 148928125 C A CP Missense_Mutation p.D146Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-21-1070-01 3 151160868 151160868 C A IGSF10 Missense_Mutation p.G1956V 0.25 deleterious(0) probably_damaging(0.999) TCGA-21-1070-01 3 167750315 167750315 C A GOLIM4 Missense_Mutation p.R390L 0.14 tolerated(0.33) benign(0.109) TCGA-21-1070-01 3 169539958 169539958 G T LRRIQ4 Silent p.L83L 0.62 TCGA-21-1070-01 3 169548372 169548372 G A LRRIQ4 Silent p.R429R 0.14 TCGA-21-1070-01 3 170715606 170715606 G C SLC2A2 3'UTR 0.50 TCGA-21-1070-01 3 179119032 179119032 G T GNB4 Missense_Mutation p.S331Y 0.19 deleterious(0) probably_damaging(1) TCGA-21-1070-01 3 179292256 179292256 G T ACTL6A Splice_Site p.X159_splice 0.15 TCGA-21-1070-01 3 185769884 185769884 C A ETV5 Missense_Mutation p.A416S 0.42 deleterious(0.04) probably_damaging(0.998) TCGA-21-1070-01 3 186440291 186440291 G T KNG1 Missense_Mutation p.Q124H 0.37 deleterious(0.01) possibly_damaging(0.901) TCGA-21-1070-01 3 47882519 47882519 T G DHX30 Missense_Mutation p.I173M 0.35 deleterious_low_confidence(0.04) possibly_damaging(0.459) TCGA-21-1070-01 3 51970535 51970535 G A RRP9 Missense_Mutation p.P185L 0.34 deleterious(0.02) benign(0.339) TCGA-21-1070-01 3 86010798 86010798 G T CADM2 Splice_Site p.X317_splice 0.39 TCGA-21-1070-01 3 9788954 9788954 A T BRPF1 Missense_Mutation p.Q1195L 0.33 deleterious(0) benign(0.208) TCGA-21-1070-01 3 98600525 98600525 C A DCBLD2 Missense_Mutation p.V98F 0.22 deleterious(0.01) probably_damaging(0.991) TCGA-21-1070-01 4 110765463 110765463 G T RRH 3'UTR 0.27 TCGA-21-1070-01 4 111470932 111470932 G T ENPEP Missense_Mutation p.E797D 0.27 deleterious(0.04) possibly_damaging(0.513) TCGA-21-1070-01 4 113353197 113353197 T A ALPK1 Missense_Mutation p.S832T 0.35 tolerated(0.6) benign(0.008) TCGA-21-1070-01 4 113353198 113353198 C A ALPK1 Missense_Mutation p.S832Y 0.35 tolerated(0.59) possibly_damaging(0.45) TCGA-21-1070-01 4 114120241 114120241 A T ANK2 Silent p.G120G 0.32 TCGA-21-1070-01 4 122754443 122754443 C T BBS7 Missense_Mutation p.C540Y 0.37 deleterious(0.01) benign(0.001) TCGA-21-1070-01 4 151336617 151336617 T C LRBA Silent p.S2400S 0.29 TCGA-21-1070-01 4 156135714 156135714 C T NPY2R Missense_Mutation p.P208L 0.24 deleterious(0) probably_damaging(1) TCGA-21-1070-01 4 159533290 159533290 G C RXFP1 Missense_Mutation p.S182T 0.09 tolerated(0.06) benign(0.202) TCGA-21-1070-01 4 169102890 169102890 C A ANXA10 Missense_Mutation p.H261N 0.26 deleterious(0.01) benign(0.02) TCGA-21-1070-01 4 189013004 189013004 A G TRIML2 Silent p.D229D 0.06 TCGA-21-1070-01 4 20555464 20555464 C A SLIT2 Missense_Mutation p.N866K 0.32 tolerated(0.18) benign(0.004) TCGA-21-1070-01 4 21305524 21305524 G C KCNIP4 Intron 0.34 TCGA-21-1070-01 4 38798565 38798565 C A TLR1 Nonsense_Mutation p.E630* 0.35 TCGA-21-1070-01 4 4198988 4198988 G T OTOP1 Missense_Mutation p.P525T 0.38 tolerated(0.23) benign(0.053) TCGA-21-1070-01 4 4304612 4304612 G T ZBTB49 Missense_Mutation p.S350I 0.41 tolerated(0.24) benign(0.003) TCGA-21-1070-01 4 5624376 5624376 C A EVC2 Missense_Mutation p.D797Y 0.25 deleterious(0.01) possibly_damaging(0.885) TCGA-21-1070-01 4 68928301 68928301 G T TMPRSS11F Intron 0.25 TCGA-21-1070-01 4 72121047 72121047 G T SLC4A4 Nonsense_Mutation p.E62* 0.33 TCGA-21-1070-01 4 87622436 87622436 C T PTPN13 Missense_Mutation p.P226L 0.24 tolerated(0.1) benign(0.373) TCGA-21-1070-01 4 89744386 89744386 T C FAM13A Intron 0.20 TCGA-21-1070-01 5 122337129 122337129 C A SNX24 Nonsense_Mutation p.S125* 0.21 TCGA-21-1070-01 5 1239587 1239587 G T SLC6A18 Missense_Mutation p.R252L 0.10 tolerated(0.12) possibly_damaging(0.863) TCGA-21-1070-01 5 130834235 130834235 T C RAPGEF6 Missense_Mutation p.I440M 0.37 deleterious(0) probably_damaging(0.965) TCGA-21-1070-01 5 132219152 132219155 AAGA - AFF4 Frame_Shift_Del p.S1081Qfs*2 0.31 TCGA-21-1070-01 5 134076787 134076787 C T CAMLG Silent p.D69D 0.33 TCGA-21-1070-01 5 140187880 140187880 G T PCDHA4 Missense_Mutation p.A370S 0.31 deleterious_low_confidence(0) possibly_damaging(0.877) TCGA-21-1070-01 5 140563000 140563000 G T PCDHB16 Missense_Mutation p.S289I 0.26 tolerated_low_confidence(0.43) possibly_damaging(0.878) TCGA-21-1070-01 5 140603567 140603567 A T PCDHB14 Missense_Mutation p.S164C 0.31 deleterious_low_confidence(0.02) possibly_damaging(0.684) TCGA-21-1070-01 5 140763975 140763975 C A PCDHGA7 Silent p.S503S 0.34 TCGA-21-1070-01 5 153030074 153030074 G T GRIA1 Missense_Mutation p.Q225H 0.38 tolerated(0.16) possibly_damaging(0.501) TCGA-21-1070-01 5 156770220 156770220 G T FNDC9 Missense_Mutation p.P109T 0.18 tolerated(0.26) possibly_damaging(0.866) TCGA-21-1070-01 5 180326213 180326213 C A BTNL8 5'UTR 0.35 TCGA-21-1070-01 5 19473548 19473548 C A CDH18 Silent p.L720L 0.19 TCGA-21-1070-01 5 19473613 19473613 G C CDH18 Missense_Mutation p.P699A 0.19 tolerated(0.17) benign(0.001) TCGA-21-1070-01 5 24487669 24487669 G A CDH10 3'UTR 0.32 TCGA-21-1070-01 5 32395264 32395264 C T ZFR Splice_Site p.X660_splice 0.24 TCGA-21-1070-01 5 35867558 35867558 C A IL7R Silent p.T124T 0.22 TCGA-21-1070-01 5 36686471 36686471 C G SLC1A3 3'UTR 0.27 TCGA-21-1070-01 5 39126144 39126146 TCG - FYB In_Frame_Del p.R677del 0.26 TCGA-21-1070-01 5 39306791 39306791 G T C9 Silent p.T448T 0.16 TCGA-21-1070-01 5 39306792 39306792 G T C9 Missense_Mutation p.T448N 0.16 tolerated(0.34) benign(0.017) TCGA-21-1070-01 5 40852457 40852457 G T CARD6 Missense_Mutation p.R341S 0.22 deleterious(0) probably_damaging(0.999) TCGA-21-1070-01 5 40979897 40979897 C A C7 Missense_Mutation p.H746N 0.22 tolerated(0.35) benign(0.321) TCGA-21-1070-01 5 41000864 41000864 C T MROH2B Nonsense_Mutation p.W1422* 0.15 TCGA-21-1070-01 5 41019017 41019017 C A MROH2B Missense_Mutation p.G849C 0.27 deleterious(0) probably_damaging(0.982) TCGA-21-1070-01 5 41057275 41057275 G T MROH2B Nonsense_Mutation p.C285* 0.18 TCGA-21-1070-01 5 45262355 45262355 G T HCN1 Silent p.R781R 0.23 TCGA-21-1070-01 5 45353210 45353210 G T HCN1 Missense_Mutation p.L457M 0.21 deleterious(0) probably_damaging(0.992) TCGA-21-1070-01 5 5463893 5463893 G A KIAA0947 Silent p.E1482E 0.45 TCGA-21-1070-01 5 7867909 7867909 A C FASTKD3 Missense_Mutation p.N96K 0.15 tolerated(0.93) benign(0.002) TCGA-21-1070-01 5 86633842 86633842 G A RASA1 Nonsense_Mutation p.W317* 0.28 TCGA-21-1070-01 5 878484 878484 C A BRD9 Silent p.V419V 0.08 TCGA-21-1070-01 5 904320 904320 T G TRIP13 Missense_Mutation p.I198S 0.49 deleterious(0) probably_damaging(0.98) TCGA-21-1070-01 5 9054296 9054296 C A SEMA5A Missense_Mutation p.R864S 0.19 deleterious(0) probably_damaging(0.999) TCGA-21-1070-01 6 108192807 108192807 C A SEC63 3'UTR 0.22 TCGA-21-1070-01 6 117866736 117866736 G A DCBLD1 Missense_Mutation p.D531N 0.23 deleterious(0.01) probably_damaging(0.981) TCGA-21-1070-01 6 121769007 121769007 C A GJA1 Silent p.P338P 0.17 TCGA-21-1070-01 6 132189172 132189172 G C ENPP1 Missense_Mutation p.L393F 0.20 deleterious(0) probably_damaging(1) TCGA-21-1070-01 6 132966668 132966668 T G TAAR1 Missense_Mutation p.I159L 0.20 tolerated(0.07) possibly_damaging(0.612) TCGA-21-1070-01 6 133065517 133065517 G T VNN2 Silent p.T495T 0.14 TCGA-21-1070-01 6 137330606 137330606 C T IL20RA Missense_Mutation p.A143T 0.22 tolerated(0.26) benign(0.21) TCGA-21-1070-01 6 139694413 139694413 G C CITED2 Missense_Mutation p.I223M 0.25 deleterious(0) probably_damaging(0.997) TCGA-21-1070-01 6 144860477 144860477 G T UTRN Silent p.L2139L 0.22 TCGA-21-1070-01 6 145051514 145051515 - AGAA UTRN Frame_Shift_Ins p.Y2614Rfs*17 0.19 TCGA-21-1070-01 6 149826461 149826461 T A PPIL4 3'UTR 0.09 TCGA-21-1070-01 6 149916342 149916342 G A KATNA1 Missense_Mutation p.R436C 0.23 deleterious(0) probably_damaging(0.997) TCGA-21-1070-01 6 152651009 152651009 G C SYNE1 Missense_Mutation p.S4937R 0.21 benign(0.015) TCGA-21-1070-01 6 152651010 152651010 C T SYNE1 Missense_Mutation p.S4937N 0.22 possibly_damaging(0.584) TCGA-21-1070-01 6 153042970 153042970 G T MYCT1 Missense_Mutation p.R97I 0.24 deleterious(0) probably_damaging(0.918) TCGA-21-1070-01 6 160899605 160899605 C T LPAL2 RNA 0.10 TCGA-21-1070-01 6 167570656 167570656 C T GPR31 Missense_Mutation p.A222T 0.15 tolerated(0.38) benign(0.05) TCGA-21-1070-01 6 167752259 167752259 C T TTLL2 Nonsense_Mutation p.R58* 0.27 TCGA-21-1070-01 6 170862340 170862340 G A PSMB1 5'UTR 0.39 TCGA-21-1070-01 6 24786002 24786002 C T GMNN Missense_Mutation p.S202F 0.35 deleterious(0) benign(0.386) TCGA-21-1070-01 6 26197080 26197080 C G HIST1H3D Silent p.G133G 0.06 TCGA-21-1070-01 6 27833365 27833365 G T HIST1H2AL Missense_Mutation p.R78L 0.37 deleterious_low_confidence(0) benign(0.045) TCGA-21-1070-01 6 31833676 31833676 T G SLC44A4 Missense_Mutation p.L487F 0.42 deleterious(0) probably_damaging(0.991) TCGA-21-1070-01 6 34004071 34004071 C A GRM4 Missense_Mutation p.V606L 0.32 tolerated(0.29) probably_damaging(0.997) TCGA-21-1070-01 6 348907 348907 G C DUSP22 Intron 0.19 TCGA-21-1070-01 6 50740556 50740556 C A TFAP2D Silent p.G446G 0.24 TCGA-21-1070-01 6 51882241 51882241 G T PKHD1 Nonsense_Mutation p.S1856* 0.24 TCGA-21-1070-01 6 55216069 55216069 C A GFRAL Missense_Mutation p.S130Y 0.20 deleterious(0) probably_damaging(0.968) TCGA-21-1070-01 6 56434790 56434790 C A DST Missense_Mutation p.C1958F 0.32 probably_damaging(0.999) TCGA-21-1070-01 6 71238128 71238128 C G FAM135A Missense_Mutation p.L1250V 0.20 deleterious(0) probably_damaging(0.999) TCGA-21-1070-01 6 7584884 7584884 G T DSP Missense_Mutation p.K2463N 0.39 probably_damaging(0.999) TCGA-21-1070-01 6 75861915 75861915 T G COL12A1 Missense_Mutation p.H1256P 0.18 possibly_damaging(0.898) TCGA-21-1070-01 6 84368748 84368748 C T SNAP91 Silent p.Q172Q 0.47 TCGA-21-1070-01 6 91263279 91263279 C A MAP3K7 Missense_Mutation p.V212F 0.22 deleterious(0) probably_damaging(0.992) TCGA-21-1070-01 6 97597879 97597879 T C MMS22L Missense_Mutation p.Y1167C 0.17 tolerated(0.05) possibly_damaging(0.77) TCGA-21-1070-01 6 97715858 97715858 G A MMS22L Nonsense_Mutation p.Q240* 0.19 TCGA-21-1070-01 7 106509321 106509321 C T PIK3CG Missense_Mutation p.P439S 0.24 tolerated(0.4) benign(0.012) TCGA-21-1070-01 7 107557360 107557360 C T DLD Missense_Mutation p.P333S 0.23 tolerated(0.27) benign(0) TCGA-21-1070-01 7 108524507 108524507 C A C7orf66 Missense_Mutation p.S28I 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.883) TCGA-21-1070-01 7 127569298 127569298 G T SND1 Missense_Mutation p.A529S 0.24 deleterious(0.01) probably_damaging(0.911) TCGA-21-1070-01 7 128485140 128485140 C A FLNC Missense_Mutation p.N1207K 0.28 deleterious(0.04) possibly_damaging(0.737) TCGA-21-1070-01 7 135279324 135279324 A T NUP205 Missense_Mutation p.E620D 0.30 deleterious(0) benign(0.319) TCGA-21-1070-01 7 136700605 136700605 C G CHRM2 Silent p.T331T 0.23 TCGA-21-1070-01 7 139026191 139026191 C G LUC7L2 Missense_Mutation p.L21V 0.30 deleterious_low_confidence(0) benign(0) TCGA-21-1070-01 7 140125917 140125917 G C RAB19 Missense_Mutation p.Q207H 0.27 tolerated(0.2) benign(0.006) TCGA-21-1070-01 7 143054027 143054027 T A FAM131B Missense_Mutation p.E233D 0.33 tolerated(0.4) probably_damaging(0.958) TCGA-21-1070-01 7 143098452 143098452 C A EPHA1 Missense_Mutation p.V133L 0.36 tolerated(0.7) probably_damaging(0.966) TCGA-21-1070-01 7 148964026 148964026 G T ZNF783 Silent p.L179L 0.26 TCGA-21-1070-01 7 149129236 149129236 C A ZNF777 Silent p.L709L 0.33 TCGA-21-1070-01 7 149174139 149174139 C A ZNF746 Splice_Site p.X238_splice 0.33 TCGA-21-1070-01 7 18688287 18688287 A C HDAC9 Missense_Mutation p.Q483P 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-21-1070-01 7 18914192 18914192 C A HDAC9 Missense_Mutation p.L926I 0.46 deleterious(0) probably_damaging(0.981) TCGA-21-1070-01 7 31848707 31848707 C A PDE1C Missense_Mutation p.G670V 0.09 tolerated_low_confidence(0.27) benign(0.033) TCGA-21-1070-01 7 31848708 31848708 C A PDE1C Missense_Mutation p.G670C 0.09 deleterious_low_confidence(0.04) benign(0.299) TCGA-21-1070-01 7 32957137 32957137 T C RP9P RNA 0.25 TCGA-21-1070-01 7 48353926 48353926 C A ABCA13 Missense_Mutation p.S3260Y 0.25 probably_damaging(0.935) TCGA-21-1070-01 7 56007350 56007350 C G ZNF713 Missense_Mutation p.S315C 0.22 tolerated(0.11) probably_damaging(0.991) TCGA-21-1070-01 7 63726382 63726382 A G ZNF679 Missense_Mutation p.Q124R 0.31 tolerated(0.09) probably_damaging(0.968) TCGA-21-1070-01 7 73466304 73466304 G T ELN Missense_Mutation p.A314S 0.20 unknown(0) TCGA-21-1070-01 7 81355244 81355244 C A HGF Missense_Mutation p.C377F 0.22 deleterious(0) probably_damaging(0.999) TCGA-21-1070-01 7 93116264 93116264 C T CALCR Silent p.L28L 0.19 TCGA-21-1070-01 7 94540608 94540608 G A PPP1R9A Missense_Mutation p.V395M 0.15 deleterious(0.03) benign(0.382) TCGA-21-1070-01 7 96810378 96810378 G C ACN9 Missense_Mutation p.G77R 0.22 tolerated(0.47) benign(0.04) TCGA-21-1070-01 7 99226964 99226964 G A ZSCAN25 Missense_Mutation p.G319D 0.29 tolerated(0.18) benign(0.007) TCGA-21-1070-01 7 99699370 99699370 G A AP4M1 Silent p.K11K 0.10 TCGA-21-1070-01 8 10690487 10690487 C A SOX7 Missense_Mutation p.G46V 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-21-1070-01 8 10690488 10690488 C A SOX7 Missense_Mutation p.G46W 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-21-1070-01 8 113275906 113275906 C T CSMD3 Missense_Mutation p.G3275E 0.23 deleterious(0.02) probably_damaging(0.911) TCGA-21-1070-01 8 113275907 113275907 C A CSMD3 Missense_Mutation p.G3275W 0.22 deleterious(0) probably_damaging(0.994) TCGA-21-1070-01 8 113585763 113585763 C A CSMD3 Missense_Mutation p.G1337W 0.21 deleterious(0.03) possibly_damaging(0.823) TCGA-21-1070-01 8 113657367 113657367 G T CSMD3 Missense_Mutation p.T1094K 0.22 deleterious(0.01) benign(0.02) TCGA-21-1070-01 8 133899310 133899310 C G TG Missense_Mutation p.L565V 0.24 tolerated(0.51) benign(0.119) TCGA-21-1070-01 8 134488427 134488427 C A ST3GAL1 5'UTR 0.33 TCGA-21-1070-01 8 143395758 143395758 C A TSNARE1 Missense_Mutation p.R373M 0.12 deleterious(0.01) possibly_damaging(0.847) TCGA-21-1070-01 8 144996487 144996487 C A PLEC Missense_Mutation p.S2638I 0.29 benign(0.074) TCGA-21-1070-01 8 145584541 145584541 C T SLC52A2 Missense_Mutation p.R402W 0.32 deleterious(0.04) possibly_damaging(0.677) TCGA-21-1070-01 8 145640760 145640760 G T SLC39A4 Missense_Mutation p.A173E 0.29 tolerated(0.17) possibly_damaging(0.887) TCGA-21-1070-01 8 16962001 16962001 G A MICU3 Splice_Site p.X362_splice 0.28 TCGA-21-1070-01 8 23708999 23708999 C A STC1 Missense_Mutation p.V103F 0.25 deleterious(0) benign(0.218) TCGA-21-1070-01 8 24771526 24771526 A T NEFM Missense_Mutation p.S74C 0.38 deleterious(0) unknown(0) TCGA-21-1070-01 8 30999085 30999085 A G WRN Missense_Mutation p.K1036R 0.18 tolerated(0.13) benign(0.259) TCGA-21-1070-01 8 35579763 35579763 G T UNC5D Missense_Mutation p.G385C 0.23 deleterious(0.01) benign(0.384) TCGA-21-1070-01 8 37556121 37556121 G - ZNF703 Frame_Shift_Del p.G568Dfs*14 0.17 TCGA-21-1070-01 8 39521396 39521396 C T ADAM18 Missense_Mutation p.T438I 0.23 tolerated(0.1) probably_damaging(0.926) TCGA-21-1070-01 8 40389692 40389692 C A ZMAT4 3'UTR 0.20 TCGA-21-1070-01 8 52323863 52323863 T A PXDNL Missense_Mutation p.Q670L 0.42 tolerated(0.4) benign(0.011) TCGA-21-1070-01 8 54891624 54891624 T A TCEA1 Silent p.T262T 0.28 TCGA-21-1070-01 8 59059414 59059414 G C FAM110B Missense_Mutation p.V209L 0.23 tolerated(0.6) benign(0.007) TCGA-21-1070-01 8 67971611 67971611 C G COPS5 Silent p.S71S 0.26 TCGA-21-1070-01 8 68334655 68334655 C G CPA6 3'UTR 0.33 TCGA-21-1070-01 8 69351829 69351847 TCAAAGAACTTTGTCTGGA - C8orf34 Frame_Shift_Del p.Q142Lfs*29 0.19 TCGA-21-1070-01 8 71520391 71520391 C A TRAM1 Missense_Mutation p.S15I 0.26 deleterious(0.01) probably_damaging(0.993) TCGA-21-1070-01 8 95511670 95511670 T A KIAA1429 Nonsense_Mutation p.K1388* 0.26 TCGA-21-1070-01 8 9592555 9592555 G T TNKS Missense_Mutation p.D832Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-21-1070-01 8 99139974 99139974 C - POP1 Frame_Shift_Del p.K100Sfs*3 0.22 TCGA-21-1070-01 9 113547183 113547183 A G MUSK Silent p.T491T 0.32 TCGA-21-1070-01 9 114685132 114685132 G C UGCG Missense_Mutation p.E82Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-21-1070-01 9 115038169 115038169 T C PTBP3 Silent p.P87P 0.36 TCGA-21-1070-01 9 119202971 119202971 C T ASTN2 Silent p.L1182L 0.36 TCGA-21-1070-01 9 119738430 119738430 G T ASTN2 Missense_Mutation p.L521M 0.35 deleterious_low_confidence(0) unknown(0) TCGA-21-1070-01 9 125563091 125563091 C A OR1K1 Silent p.P230P 0.33 TCGA-21-1070-01 9 127245163 127245163 C T NR5A1 Silent p.L420L 0.29 TCGA-21-1070-01 9 128099688 128099688 C T GAPVD1 Nonsense_Mutation p.R926* 0.28 TCGA-21-1070-01 9 130479668 130479668 C T TTC16 Missense_Mutation p.L83F 0.43 tolerated(1) benign(0.001) TCGA-21-1070-01 9 130575994 130575994 G A FPGS 3'UTR 0.41 TCGA-21-1070-01 9 132593188 132593188 C G C9orf78 Missense_Mutation p.Q168H 0.38 deleterious(0) probably_damaging(1) TCGA-21-1070-01 9 14788958 14788958 G T FREM1 Missense_Mutation p.P1379H 0.21 deleterious(0) possibly_damaging(0.677) TCGA-21-1070-01 9 19446415 19446415 T A ACER2 Missense_Mutation p.W214R 0.27 deleterious(0) probably_damaging(1) TCGA-21-1070-01 9 35045314 35045314 C G C9orf131 Missense_Mutation p.S896R 0.25 deleterious(0.01) benign(0.26) TCGA-21-1070-01 9 35095564 35095564 C A PIGO Splice_Site 0.23 TCGA-21-1070-01 9 5763163 5763163 A G KIAA1432 Silent p.V712V 0.25 TCGA-21-1070-01 9 95797692 95797692 G T FGD3 Missense_Mutation p.D667Y 0.48 deleterious(0) possibly_damaging(0.646) TCGA-21-1070-01 9 99403910 99403910 C T AAED1 3'UTR 0.41 TCGA-21-1070-01 X 100490873 100490873 G T DRP2 Missense_Mutation p.A48S 0.25 tolerated_low_confidence(0.21) benign(0.039) TCGA-21-1070-01 X 100880053 100880053 T C ARMCX3 Silent p.T28T 0.27 TCGA-21-1070-01 X 100912230 100912230 G T ARMCX2 Silent p.A115A 0.21 TCGA-21-1070-01 X 101821978 101821978 G T NXF4 RNA 0.28 TCGA-21-1070-01 X 101908916 101908916 G T GPRASP1 Silent p.G25G 0.23 TCGA-21-1070-01 X 103041628 103041628 G A PLP1 Silent p.L142L 0.21 TCGA-21-1070-01 X 103499120 103499120 C A ESX1 Missense_Mutation p.R74L 0.22 tolerated(0.21) benign(0.077) TCGA-21-1070-01 X 104464792 104464792 G A TEX13A Missense_Mutation p.A97V 0.30 deleterious(0.01) benign(0.417) TCGA-21-1070-01 X 104464875 104464875 C A TEX13A Missense_Mutation p.W69C 0.15 deleterious(0.03) benign(0.03) TCGA-21-1070-01 X 105152799 105152799 C A NRK Missense_Mutation p.P390H 0.17 deleterious(0) possibly_damaging(0.847) TCGA-21-1070-01 X 105152800 105152800 C A NRK Silent p.P390P 0.18 TCGA-21-1070-01 X 105153311 105153311 G T NRK Nonsense_Mutation p.E561* 0.30 TCGA-21-1070-01 X 107840243 107840243 C A COL4A5 Missense_Mutation p.P511H 0.29 unknown(0) TCGA-21-1070-01 X 108636237 108636237 C A GUCY2F Missense_Mutation p.M824I 0.18 deleterious(0.04) benign(0.011) TCGA-21-1070-01 X 108719023 108719023 A T GUCY2F Missense_Mutation p.V48E 0.20 deleterious(0.01) benign(0.1) TCGA-21-1070-01 X 111914544 111914544 G T LHFPL1 Silent p.T25T 0.24 TCGA-21-1070-01 X 115304006 115304006 G - AGTR2 Frame_Shift_Del p.W158Cfs*6 0.19 TCGA-21-1070-01 X 119693974 119693974 C G CUL4B Missense_Mutation p.G192R 0.21 deleterious(0.05) benign(0.284) TCGA-21-1070-01 X 119742191 119742191 C T MCTS1 Missense_Mutation p.P126L 0.07 tolerated(0.06) benign(0.008) TCGA-21-1070-01 X 120008975 120008975 C A CT47B1 Missense_Mutation p.G184C 0.20 deleterious(0.02) probably_damaging(0.998) TCGA-21-1070-01 X 122599631 122599631 G T GRIA3 Missense_Mutation p.D811Y 0.20 deleterious(0.01) probably_damaging(0.918) TCGA-21-1070-01 X 123587186 123587186 C A TENM1 Splice_Site p.X1368_splice 0.22 TCGA-21-1070-01 X 123615585 123615585 G C TENM1 Missense_Mutation p.R1316G 0.19 deleterious(0) possibly_damaging(0.903) TCGA-21-1070-01 X 124030047 124030047 G T TENM1 Nonsense_Mutation p.Y87* 0.22 TCGA-21-1070-01 X 127185842 127185842 G T ACTRT1 Missense_Mutation p.P115H 0.20 deleterious(0) probably_damaging(0.988) TCGA-21-1070-01 X 127185843 127185843 G T ACTRT1 Missense_Mutation p.P115T 0.20 deleterious(0.01) probably_damaging(0.975) TCGA-21-1070-01 X 128902393 128902393 C A XPNPEP2 Missense_Mutation p.P653T 0.20 tolerated_low_confidence(0.22) benign(0.003) TCGA-21-1070-01 X 129058809 129058809 C T UTP14A Silent p.L463L 0.25 TCGA-21-1070-01 X 129059948 129059948 G T UTP14A Silent p.G601G 0.20 TCGA-21-1070-01 X 129148793 129148793 C G BCORL1 Missense_Mutation p.S682C 0.21 possibly_damaging(0.864) TCGA-21-1070-01 X 130413316 130413316 C G IGSF1 Splice_Site p.X549_splice 0.21 TCGA-21-1070-01 X 134025618 134025618 C A MOSPD1 Silent p.V167V 0.26 TCGA-21-1070-01 X 134715684 134715684 G A DDX26B 3'UTR 0.18 TCGA-21-1070-01 X 140992756 140992756 G C MAGEC1 Intron 0.25 TCGA-21-1070-01 X 140992771 140992771 A T MAGEC1 5'UTR 0.16 TCGA-21-1070-01 X 142967197 142967197 G T UBE2NL 5'UTR 0.25 TCGA-21-1070-01 X 144337227 144337227 C A SPANXN1 Missense_Mutation p.P38T 0.21 tolerated(0.18) benign(0.325) TCGA-21-1070-01 X 150869319 150869319 G T PRRG3 Silent p.R170R 0.26 TCGA-21-1070-01 X 151093079 151093079 G T MAGEA4 Nonsense_Mutation p.E315* 0.23 TCGA-21-1070-01 X 151896328 151896328 C A MAGEA12 3'Flank 0.21 TCGA-21-1070-01 X 151896329 151896329 C G MAGEA12 3'Flank 0.21 TCGA-21-1070-01 X 15268612 15268612 G T ASB9 Missense_Mutation p.P170T 0.25 deleterious(0) probably_damaging(0.973) TCGA-21-1070-01 X 153073817 153073817 C A PDZD4 Missense_Mutation p.E98D 0.24 tolerated(0.22) benign(0.134) TCGA-21-1070-01 X 22115098 22115098 C A PHEX Missense_Mutation p.T292N 0.12 tolerated(0.58) benign(0.043) TCGA-21-1070-01 X 23019971 23019971 A T DDX53 Silent p.V599V 0.22 TCGA-21-1070-01 X 27998447 27998447 G T DCAF8L1 Silent p.V335V 0.28 TCGA-21-1070-01 X 27998849 27998849 G T DCAF8L1 Silent p.T201T 0.22 TCGA-21-1070-01 X 31152218 31152218 C A DMD Splice_Site p.X3672_splice 0.28 TCGA-21-1070-01 X 3238788 3238788 C T MXRA5 Silent p.P1646P 0.24 TCGA-21-1070-01 X 37913508 37913508 G T SYTL5 Silent p.G54G 0.23 TCGA-21-1070-01 X 37913589 37913589 T A SYTL5 Nonsense_Mutation p.C81* 0.05 TCGA-21-1070-01 X 41333968 41333968 T A NYX Missense_Mutation p.L421Q 0.20 deleterious(0) probably_damaging(0.993) TCGA-21-1070-01 X 46918556 46918556 T C JADE3 3'UTR 0.35 TCGA-21-1070-01 X 48386663 48386663 C A EBP Missense_Mutation p.R171S 0.26 deleterious(0.02) possibly_damaging(0.82) TCGA-21-1070-01 X 48775872 48775872 G T PIM2 Missense_Mutation p.L38M 0.33 deleterious(0) probably_damaging(0.977) TCGA-21-1070-01 X 48896775 48896775 G T TFE3 Missense_Mutation p.R131S 0.48 deleterious(0) unknown(0) TCGA-21-1070-01 X 49087004 49087004 G A CACNA1F Missense_Mutation p.P197S 0.21 tolerated(0.3) possibly_damaging(0.613) TCGA-21-1070-01 X 50054322 50054322 C A CCNB3 Silent p.P1051P 0.22 TCGA-21-1070-01 X 50090771 50090771 C G CCNB3 Nonsense_Mutation p.Y1319* 0.19 TCGA-21-1070-01 X 53112249 53112249 G T TSPYL2 Missense_Mutation p.R190L 0.32 deleterious(0.01) possibly_damaging(0.821) TCGA-21-1070-01 X 53112250 53112250 G T TSPYL2 Silent p.R190R 0.32 TCGA-21-1070-01 X 53574688 53574688 C A HUWE1 Missense_Mutation p.V3528L 0.22 unknown(0) TCGA-21-1070-01 X 53574689 53574689 G A HUWE1 Silent p.V3527V 0.24 TCGA-21-1070-01 X 54276065 54276065 G T WNK3 Missense_Mutation p.P906T 0.27 tolerated(0.3) benign(0.01) TCGA-21-1070-01 X 54481902 54481902 C A FGD1 Missense_Mutation p.R665L 0.21 deleterious(0.01) benign(0.283) TCGA-21-1070-01 X 54984739 54984739 C A PFKFB1 Missense_Mutation p.R172S 0.26 benign(0.028) TCGA-21-1070-01 X 54984740 54984740 C A PFKFB1 Missense_Mutation p.R172M 0.26 benign(0.003) TCGA-21-1070-01 X 57146278 57146278 C A SPIN2B 3'UTR 0.19 TCGA-21-1070-01 X 57935969 57935969 C A ZXDA Missense_Mutation p.G296C 0.29 deleterious(0) probably_damaging(1) TCGA-21-1070-01 X 63411079 63411079 C G AMER1 Missense_Mutation p.R696S 0.25 tolerated(0.09) probably_damaging(0.998) TCGA-21-1070-01 X 63444978 63444978 G T ASB12 Missense_Mutation p.L185I 0.27 deleterious(0) probably_damaging(0.994) TCGA-21-1070-01 X 63488508 63488508 G T MTMR8 Missense_Mutation p.A675D 0.31 tolerated_low_confidence(0.24) benign(0) TCGA-21-1070-01 X 65252573 65252573 G T VSIG4 Missense_Mutation p.T144K 0.18 tolerated(0.1) benign(0.28) TCGA-21-1070-01 X 67937247 67937247 G T STARD8 Missense_Mutation p.S164I 0.13 deleterious(0.01) possibly_damaging(0.841) TCGA-21-1070-01 X 70613229 70613229 C T TAF1 Missense_Mutation p.P1064S 0.30 tolerated(0.5) benign(0.341) TCGA-21-1070-01 X 70784604 70784604 G T OGT Splice_Site p.X863_splice 0.25 TCGA-21-1070-01 X 73071841 73071841 C A XIST RNA 0.18 TCGA-21-1070-01 X 75650681 75650681 C - MAGEE1 Frame_Shift_Del p.L787* 0.22 TCGA-21-1070-01 X 76938690 76938690 C A ATRX Missense_Mutation p.K686N 0.30 benign(0.009) TCGA-21-1070-01 X 77528615 77528615 G T CYSLTR1 Missense_Mutation p.T210K 0.24 deleterious(0.04) possibly_damaging(0.67) TCGA-21-1070-01 X 79978191 79978191 G T BRWD3 Missense_Mutation p.H582Q 0.26 deleterious(0) probably_damaging(0.969) TCGA-21-1070-01 X 83390218 83390218 C A RPS6KA6 Missense_Mutation p.V168F 0.24 tolerated(0.06) possibly_damaging(0.535) TCGA-21-1070-01 X 84526181 84526181 C A ZNF711 Missense_Mutation p.Q545K 0.40 tolerated(0.16) benign(0.265) TCGA-21-1070-01 X 88009340 88009340 C A CPXCR1 3'UTR 0.28 TCGA-21-1070-01 X 91133298 91133298 C A PCDH11X Missense_Mutation p.P687T 0.18 tolerated(0.09) benign(0.101) TCGA-21-1070-01 X 9728819 9728819 C A GPR143 Missense_Mutation p.D100Y 0.38 deleterious(0.01) possibly_damaging(0.637) TCGA-21-1070-01 X 99662467 99662467 C A PCDH19 Missense_Mutation p.D377Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-21-1070-01 X 99891751 99891751 G A TSPAN6 5'UTR 0.33 TCGA-21-1070-01 X 99891752 99891752 G T TSPAN6 5'UTR 0.33 TCGA-21-1071-01 10 102988591 102988591 C T LBX1 5'UTR 0.35 TCGA-21-1071-01 10 104159110 104159110 A G NFKB2 Missense_Mutation p.M395V 0.50 tolerated(0.97) benign(0) TCGA-21-1071-01 10 118451905 118451905 C T HSPA12A Nonsense_Mutation p.W207* 0.29 TCGA-21-1071-01 10 43287953 43287953 G T BMS1 Missense_Mutation p.L264F 0.10 deleterious(0) probably_damaging(1) TCGA-21-1071-01 10 95660993 95660993 G A SLC35G1 Missense_Mutation p.G282R 0.10 deleterious(0) probably_damaging(0.927) TCGA-21-1071-01 11 117711023 117711023 C A FXYD6 Intron 0.11 TCGA-21-1071-01 11 119045219 119045219 G A NLRX1 Missense_Mutation p.V303M 0.20 deleterious(0.01) possibly_damaging(0.736) TCGA-21-1071-01 11 123396781 123396781 C T GRAMD1B 5'UTR 0.40 TCGA-21-1071-01 11 123893759 123893759 G A OR10G9 Missense_Mutation p.G14S 0.03 deleterious(0.01) probably_damaging(1) TCGA-21-1071-01 11 123909669 123909669 C T OR10G7 Missense_Mutation p.G14S 0.14 deleterious(0.01) probably_damaging(1) TCGA-21-1071-01 11 130332581 130332581 G A ADAMTS15 Missense_Mutation p.R483H 0.11 deleterious(0) probably_damaging(0.999) TCGA-21-1071-01 11 26587424 26587424 T C MUC15 Silent p.P21P 0.11 TCGA-21-1071-01 11 2924524 2924524 G A SLC22A18 5'UTR 0.09 TCGA-21-1071-01 11 49974527 49974527 C A OR4C13 Missense_Mutation p.L185I 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-21-1071-01 11 5020860 5020860 A T OR51L1 Silent p.I216I 0.22 TCGA-21-1071-01 11 51411670 51411670 G T OR4A5 Silent p.T242T 0.17 TCGA-21-1071-01 11 56058363 56058363 A G OR8H1 Missense_Mutation p.M59T 0.21 deleterious(0) probably_damaging(0.947) TCGA-21-1071-01 11 58206755 58206755 C G OR5B12 Silent p.L290L 0.06 TCGA-21-1071-01 11 58723372 58723372 C T GLYATL1 Missense_Mutation p.P292S 0.12 deleterious(0) probably_damaging(0.999) TCGA-21-1071-01 11 6220979 6220979 G A OR52W1 Missense_Mutation p.A176T 0.20 tolerated(1) benign(0.053) TCGA-21-1071-01 11 64417958 64417958 G T NRXN2 Missense_Mutation p.T1024K 0.19 deleterious(0) probably_damaging(0.984) TCGA-21-1071-01 11 64722090 64722090 T C C11orf85 Intron 0.27 TCGA-21-1071-01 11 65273851 65273851 T C MALAT1 RNA 0.25 TCGA-21-1071-01 11 67219276 67219276 C A GPR152 Missense_Mutation p.R307L 0.19 deleterious(0.02) possibly_damaging(0.586) TCGA-21-1071-01 11 67925895 67925895 C G SUV420H1 Missense_Mutation p.D640H 0.18 tolerated(0.18) benign(0.001) TCGA-21-1071-01 12 107391697 107391697 T C CRY1 Missense_Mutation p.I429V 0.09 tolerated(0.1) benign(0.035) TCGA-21-1071-01 12 49425862 49425863 GG - KMT2D Frame_Shift_Del p.P4209Tfs*124 0.33 TCGA-21-1071-01 12 57864981 57864981 T G GLI1 Missense_Mutation p.C820G 0.41 tolerated_low_confidence(0.23) probably_damaging(0.995) TCGA-21-1071-01 12 64875621 64875621 G T TBK1 Splice_Site p.X271_splice 0.24 TCGA-21-1071-01 12 7091877 7091877 C T LPCAT3 Missense_Mutation p.R109H 0.36 tolerated(0.14) probably_damaging(0.972) TCGA-21-1071-01 12 72266713 72266713 C T TBC1D15 Missense_Mutation p.A45V 0.07 tolerated(0.06) benign(0.201) TCGA-21-1071-01 12 72266722 72266722 T A TBC1D15 Missense_Mutation p.I48K 0.07 tolerated(0.29) possibly_damaging(0.557) TCGA-21-1071-01 12 88589318 88589318 C A TMTC3 Missense_Mutation p.D879E 0.37 deleterious_low_confidence(0.02) benign(0.004) TCGA-21-1071-01 12 88589319 88589319 G A TMTC3 Missense_Mutation p.E880K 0.38 tolerated_low_confidence(1) benign(0) TCGA-21-1071-01 12 993323 993323 C T WNK1 Missense_Mutation p.S1253F 0.11 deleterious(0) probably_damaging(0.998) TCGA-21-1071-01 13 26594167 26594167 G A ATP8A2 3'UTR 0.23 TCGA-21-1071-01 13 36050132 36050132 C A MAB21L1 Missense_Mutation p.Q48H 0.30 tolerated(0.05) benign(0.152) TCGA-21-1071-01 13 37605726 37605726 A T SUPT20H Nonsense_Mutation p.L300* 0.30 TCGA-21-1071-01 13 53420719 53420719 G T PCDH8 Missense_Mutation p.S618Y 0.26 deleterious(0) possibly_damaging(0.886) TCGA-21-1071-01 13 72014765 72014765 G A DACH1 3'UTR 0.25 TCGA-21-1071-01 14 21500273 21500273 C T TPPP2 3'UTR 0.24 TCGA-21-1071-01 14 45715975 45715975 G A MIS18BP1 Missense_Mutation p.S172L 0.11 tolerated(0.11) benign(0.004) TCGA-21-1071-01 14 52485899 52485899 G T NID2 Missense_Mutation p.L970M 0.20 tolerated(0.21) benign(0.213) TCGA-21-1071-01 14 89154734 89154734 C T EML5 Missense_Mutation p.E875K 0.11 tolerated(0.11) possibly_damaging(0.71) TCGA-21-1071-01 15 102358392 102358392 G C OR4F15 Translation_Start_Site p.M1? 0.08 deleterious_low_confidence(0.01) benign(0.2) TCGA-21-1071-01 15 22383152 22383152 G T OR4N4 Missense_Mutation p.R227M 0.45 tolerated(0.06) possibly_damaging(0.537) TCGA-21-1071-01 15 32972055 32972055 G T SCG5 Missense_Mutation p.K105N 0.09 deleterious(0.02) probably_damaging(1) TCGA-21-1071-01 15 40093305 40093305 C A GPR176 3'UTR 0.30 TCGA-21-1071-01 15 50489802 50489802 T C SLC27A2 Missense_Mutation p.L195P 0.12 tolerated(0.15) possibly_damaging(0.797) TCGA-21-1071-01 15 54305472 54305472 G A UNC13C Silent p.E124E 0.25 TCGA-21-1071-01 15 80263061 80263061 A C BCL2A1 Missense_Mutation p.I134R 0.06 deleterious(0) probably_damaging(1) TCGA-21-1071-01 15 86312069 86312069 C A KLHL25 Missense_Mutation p.D325Y 0.33 deleterious(0.03) possibly_damaging(0.731) TCGA-21-1071-01 16 1810516 1810516 G T MAPK8IP3 Silent p.L479L 0.05 TCGA-21-1071-01 16 1810517 1810517 G T MAPK8IP3 Nonsense_Mutation p.E480* 0.05 TCGA-21-1071-01 16 19451611 19451611 C T TMC5 Missense_Mutation p.S84F 0.19 deleterious_low_confidence(0) benign(0.169) TCGA-21-1071-01 16 19711758 19711758 C T C16orf62 Missense_Mutation p.T1040M 0.25 deleterious(0.01) benign(0.014) TCGA-21-1071-01 16 24268024 24268024 G C CACNG3 5'UTR 0.20 TCGA-21-1071-01 16 30994981 30994981 G A SETD1A Missense_Mutation p.R1613H 0.30 unknown(0) TCGA-21-1071-01 16 50709793 50709793 G T SNX20 Missense_Mutation p.T57K 0.30 deleterious(0) probably_damaging(1) TCGA-21-1071-01 16 58750585 58750585 T C GOT2 Missense_Mutation p.K279E 0.31 deleterious(0) probably_damaging(0.978) TCGA-21-1071-01 16 68021501 68021501 G C DPEP2 Missense_Mutation p.P457A 0.32 tolerated_low_confidence(0.39) benign(0) TCGA-21-1071-01 16 77396100 77396100 G T ADAMTS18 Missense_Mutation p.S373Y 0.42 deleterious(0) probably_damaging(0.999) TCGA-21-1071-01 17 1650356 1650356 C A SERPINF2 Missense_Mutation p.H137Q 0.29 deleterious(0.01) probably_damaging(0.992) TCGA-21-1071-01 17 20224899 20224899 G T AC004702.2 Intron 0.28 TCGA-21-1071-01 17 27959196 27959196 G T SSH2 Missense_Mutation p.Q979K 0.33 tolerated_low_confidence(1) benign(0) TCGA-21-1071-01 17 39525757 39525757 C T KRT33B Silent p.A82A 0.14 TCGA-21-1071-01 17 40321497 40321497 C T KCNH4 Missense_Mutation p.E530K 0.06 deleterious(0) benign(0.024) TCGA-21-1071-01 17 41063400 41063400 G T G6PC Missense_Mutation p.C344F 0.18 deleterious(0.04) probably_damaging(0.997) TCGA-21-1071-01 17 46691646 46691646 G A HOXB8 Nonsense_Mutation p.Q141* 0.22 TCGA-21-1071-01 17 4720515 4720515 C T PLD2 Silent p.L592L 0.25 TCGA-21-1071-01 17 48561869 48561869 G A RSAD1 Missense_Mutation p.E392K 0.07 tolerated(0.79) benign(0.009) TCGA-21-1071-01 17 72522207 72522207 G T CD300LB Missense_Mutation p.S54Y 0.07 deleterious(0) probably_damaging(0.928) TCGA-21-1071-01 17 7681435 7681435 T G DNAH2 Missense_Mutation p.F1763C 0.11 probably_damaging(0.999) TCGA-21-1071-01 17 78177672 78177672 C A CARD14 Silent p.T757T 0.21 TCGA-21-1071-01 18 14542962 14542962 C A POTEC Missense_Mutation p.G62C 0.04 deleterious_low_confidence(0) benign(0.177) TCGA-21-1071-01 18 48604810 48604810 G T SMAD4 Silent p.P544P 0.07 TCGA-21-1071-01 19 17756884 17756884 G T UNC13A Missense_Mutation p.T694K 0.12 deleterious(0) probably_damaging(0.998) TCGA-21-1071-01 19 17768938 17768938 C T UNC13A Missense_Mutation p.G234S 0.21 tolerated_low_confidence(0.59) benign(0.001) TCGA-21-1071-01 19 21281020 21281020 A G ZNF714 5'UTR 0.14 TCGA-21-1071-01 19 35804198 35804198 G A MAG Silent p.E574E 0.27 TCGA-21-1071-01 19 362268 362268 C T THEG Missense_Mutation p.A358T 0.11 deleterious(0.01) benign(0.341) TCGA-21-1071-01 19 41447224 41447224 C A CYP2B7P RNA 0.13 TCGA-21-1071-01 19 4174904 4174904 C A SIRT6 Nonsense_Mutation p.E260* 0.18 TCGA-21-1071-01 19 43689098 43689098 T A PSG5 Missense_Mutation p.N89I 0.52 tolerated(1) benign(0) TCGA-21-1071-01 19 439005 439005 C A SHC2 Missense_Mutation p.A189S 0.19 deleterious(0.02) benign(0.427) TCGA-21-1071-01 19 44514961 44514961 G A ZNF230 Missense_Mutation p.C257Y 0.48 deleterious(0) probably_damaging(1) TCGA-21-1071-01 19 49671211 49671211 T C TRPM4 Missense_Mutation p.V102A 0.05 tolerated(0.19) benign(0.005) TCGA-21-1071-01 19 49965239 49965239 C T ALDH16A1 Silent p.D286D 0.70 TCGA-21-1071-01 19 53302398 53302398 T A ZNF28 3'UTR 0.36 TCGA-21-1071-01 19 54744817 54744817 G T LILRA6 Missense_Mutation p.T282N 0.29 deleterious(0.03) probably_damaging(0.987) TCGA-21-1071-01 19 5745966 5745966 G T CATSPERD Missense_Mutation p.G234W 0.24 deleterious(0) probably_damaging(1) TCGA-21-1071-01 19 6306664 6306664 C G ACER1 3'UTR 0.19 TCGA-21-1071-01 1 120295955 120295955 A G HMGCS2 Silent p.S414S 0.09 TCGA-21-1071-01 1 152328052 152328052 G A FLG2 Missense_Mutation p.S737L 0.06 unknown(0) TCGA-21-1071-01 1 155783432 155783432 G A GON4L Missense_Mutation p.S482F 0.12 deleterious(0.02) possibly_damaging(0.683) TCGA-21-1071-01 1 155934856 155934856 G C ARHGEF2 Missense_Mutation p.S216C 0.04 deleterious(0) probably_damaging(0.998) TCGA-21-1071-01 1 156510565 156510565 C G IQGAP3 Missense_Mutation p.E892Q 0.39 deleterious(0.03) benign(0.126) TCGA-21-1071-01 1 158813762 158813762 C A MNDA Missense_Mutation p.N140K 0.05 tolerated(0.16) benign(0.01) TCGA-21-1071-01 1 196309572 196309572 G A KCNT2 Missense_Mutation p.S561L 0.05 deleterious(0.03) probably_damaging(0.989) TCGA-21-1071-01 1 197404300 197404300 G C CRB1 Missense_Mutation p.G1103R 0.58 deleterious(0) probably_damaging(0.916) TCGA-21-1071-01 1 203144577 203144577 G T MYBPH Missense_Mutation p.A73D 0.45 tolerated(0.1) possibly_damaging(0.598) TCGA-21-1071-01 1 209956220 209956220 C T C1orf74 Missense_Mutation p.D254N 0.05 tolerated(0.25) benign(0.158) TCGA-21-1071-01 1 237060906 237060906 A G MTR Missense_Mutation p.K1254E 0.03 deleterious(0.01) benign(0.003) TCGA-21-1071-01 1 237838130 237838130 G C RYR2 Missense_Mutation p.Q2938H 0.52 possibly_damaging(0.465) TCGA-21-1071-01 1 39789864 39789864 G C MACF1 Splice_Site p.X1418_splice 0.07 TCGA-21-1071-01 1 6185836 6185836 C T CHD5 Silent p.P1387P 0.18 TCGA-21-1071-01 1 70503804 70503804 C A LRRC7 Missense_Mutation p.P728Q 0.08 tolerated_low_confidence(1) benign(0) TCGA-21-1071-01 1 79403541 79403541 G A ELTD1 Silent p.S237S 0.06 TCGA-21-1071-01 1 9613682 9613682 A C SLC25A33 Splice_Site p.X19_splice 0.09 TCGA-21-1071-01 20 13415774 13415774 C A TASP1 Missense_Mutation p.G338V 0.09 tolerated(0.23) benign(0.103) TCGA-21-1071-01 20 37121581 37121581 G T RALGAPB Missense_Mutation p.W65C 0.11 deleterious(0) probably_damaging(0.999) TCGA-21-1071-01 20 42203616 42203616 C T SGK2 Missense_Mutation p.A282V 0.42 tolerated(0.72) benign(0.219) TCGA-21-1071-01 20 48568613 48568613 G T RNF114 Missense_Mutation p.D208Y 0.14 deleterious(0) probably_damaging(0.998) TCGA-21-1071-01 20 58444975 58444975 G A SYCP2 Missense_Mutation p.L1207F 0.07 tolerated(0.2) benign(0.004) TCGA-21-1071-01 20 62221634 62221634 C A GMEB2 Silent p.T467T 0.11 TCGA-21-1071-01 20 62729830 62729830 T C OPRL1 Missense_Mutation p.L264P 0.41 deleterious(0) probably_damaging(0.977) TCGA-21-1071-01 21 27117565 27117565 C G GABPA Missense_Mutation p.A41G 0.17 tolerated(0.53) benign(0.089) TCGA-21-1071-01 21 44474028 44474028 G T CBS Missense_Mutation p.L540M 0.14 deleterious(0.01) probably_damaging(0.926) TCGA-21-1071-01 22 27026323 27026323 C T CRYBA4 Missense_Mutation p.P155S 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-21-1071-01 22 37578404 37578404 C A C1QTNF6 Missense_Mutation p.A221S 0.25 tolerated(0.06) probably_damaging(0.999) TCGA-21-1071-01 2 112858261 112858261 C T TMEM87B Missense_Mutation p.S480F 0.16 tolerated(0.1) possibly_damaging(0.812) TCGA-21-1071-01 2 116101447 116101447 A T DPP10 Missense_Mutation p.K81I 0.07 tolerated(0.08) benign(0.038) TCGA-21-1071-01 2 178098806 178098806 G T NFE2L2 Missense_Mutation p.T80K 0.48 deleterious(0) probably_damaging(1) TCGA-21-1071-01 2 179325085 179325085 C T DFNB59 Silent p.V226V 0.14 TCGA-21-1071-01 2 183050765 183050765 C T PDE1A Missense_Mutation p.R473K 0.21 tolerated(0.8) benign(0.003) TCGA-21-1071-01 2 190569787 190569787 T G ANKAR Missense_Mutation p.L583V 0.38 deleterious(0.02) possibly_damaging(0.617) TCGA-21-1071-01 2 196602694 196602694 T G DNAH7 Missense_Mutation p.E4009A 0.42 tolerated(0.1) benign(0.12) TCGA-21-1071-01 2 207172827 207172827 A G ZDBF2 Missense_Mutation p.N1192S 0.38 tolerated(0.74) benign(0.292) TCGA-21-1071-01 2 211513234 211513234 C A CPS1 Missense_Mutation p.P1131H 0.30 deleterious(0) probably_damaging(1) TCGA-21-1071-01 2 228996798 228996798 G T SPHKAP Missense_Mutation p.N12K 0.12 deleterious(0.01) possibly_damaging(0.521) TCGA-21-1071-01 2 44617434 44617434 A T CAMKMT Silent p.T122T 0.49 TCGA-21-1071-01 2 71838722 71838722 C T DYSF Missense_Mutation p.P1396L 0.38 deleterious(0) probably_damaging(1) TCGA-21-1071-01 2 73716881 73716881 A - ALMS1 Frame_Shift_Del p.R2598Dfs*14 0.27 TCGA-21-1071-01 2 73717175 73717175 C T ALMS1 Missense_Mutation p.H2696Y 0.13 benign(0.131) TCGA-21-1071-01 3 118624493 118624493 G C IGSF11 Missense_Mutation p.S218C 0.04 deleterious(0) probably_damaging(0.981) TCGA-21-1071-01 3 121643880 121643880 C T SLC15A2 Missense_Mutation p.S375L 0.14 deleterious(0) benign(0.21) TCGA-21-1071-01 3 148459946 148459946 G C AGTR1 3'UTR 0.21 TCGA-21-1071-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.37 deleterious(0.02) probably_damaging(0.959) TCGA-21-1071-01 3 192635435 192635435 G T MB21D2 Missense_Mutation p.F65L 0.06 tolerated(0.08) benign(0.064) TCGA-21-1071-01 3 47452497 47452497 G A PTPN23 Missense_Mutation p.R1070Q 0.16 benign(0.07) TCGA-21-1071-01 3 52522260 52522260 A T NISCH Missense_Mutation p.N918Y 0.15 tolerated(1) benign(0.039) TCGA-21-1071-01 3 77542433 77542433 G C ROBO2 Missense_Mutation p.V252L 0.13 tolerated(0.05) benign(0.299) TCGA-21-1071-01 3 9506324 9506324 G A SETD5 Missense_Mutation p.A898T 0.33 deleterious(0.01) benign(0.018) TCGA-21-1071-01 3 9788941 9788941 C T BRPF1 Missense_Mutation p.R1191C 0.08 deleterious(0) probably_damaging(0.999) TCGA-21-1071-01 4 101953522 101953522 C A PPP3CA Splice_Site p.X414_splice 0.14 TCGA-21-1071-01 4 111539292 111539292 G T PITX2 Silent p.R322R 0.14 TCGA-21-1071-01 4 183245215 183245215 G C TENM3 Missense_Mutation p.K14N 0.16 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-21-1071-01 4 3134309 3134309 A G HTT Missense_Mutation p.I753V 0.12 benign(0.002) TCGA-21-1071-01 4 4269734 4269734 T C LYAR Missense_Mutation p.Y341C 0.23 deleterious(0) benign(0.146) TCGA-21-1071-01 4 44713069 44713069 A C GNPDA2 Missense_Mutation p.D165E 0.12 tolerated_low_confidence(0.14) probably_damaging(0.943) TCGA-21-1071-01 4 62903513 62903513 C G LPHN3 Missense_Mutation p.S1151C 0.14 deleterious(0) probably_damaging(0.967) TCGA-21-1071-01 4 68424547 68424547 C A STAP1 Missense_Mutation p.P7Q 0.12 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-21-1071-01 5 127700404 127700404 C G FBN2 Missense_Mutation p.A773P 0.43 deleterious(0) possibly_damaging(0.864) TCGA-21-1071-01 5 137219195 137219195 C A MYOT Silent p.V313V 0.06 TCGA-21-1071-01 5 140481851 140481851 G T PCDHB3 Missense_Mutation p.A540S 0.09 tolerated_low_confidence(0.06) possibly_damaging(0.506) TCGA-21-1071-01 5 140725281 140725281 G T PCDHGA3 Nonsense_Mutation p.E561* 0.32 TCGA-21-1071-01 5 140744557 140744557 G A PCDHGA5 Silent p.P220P 0.08 TCGA-21-1071-01 5 148695778 148695778 G C AFAP1L1 Missense_Mutation p.K393N 0.09 deleterious(0) probably_damaging(0.954) TCGA-21-1071-01 5 150701635 150701635 G A SLC36A2 Silent p.S384S 0.08 TCGA-21-1071-01 5 161495095 161495095 G T GABRG2 Silent p.L30L 0.15 TCGA-21-1071-01 5 177421251 177421251 C T PROP1 Silent p.P66P 0.44 TCGA-21-1071-01 5 180043933 180043933 C T FLT4 Silent p.V1021V 0.09 TCGA-21-1071-01 5 180057798 180057798 C T FLT4 Missense_Mutation p.G53R 0.12 deleterious(0) probably_damaging(0.988) TCGA-21-1071-01 5 75964666 75964666 T C IQGAP2 Missense_Mutation p.I947T 0.41 deleterious(0) probably_damaging(0.971) TCGA-21-1071-01 5 76028982 76028982 C A F2R Missense_Mutation p.A311D 0.08 deleterious(0) probably_damaging(1) TCGA-21-1071-01 5 7869254 7869254 C G MTRR Missense_Mutation p.A3G 0.29 tolerated_low_confidence(0.46) benign(0.002) TCGA-21-1071-01 5 79363825 79363825 G A THBS4 Silent p.P408P 0.14 TCGA-21-1071-01 5 82948291 82948291 C A HAPLN1 Silent p.V151V 0.31 TCGA-21-1071-01 5 90052310 90052310 A G GPR98 Missense_Mutation p.I3874V 0.09 benign(0.001) TCGA-21-1071-01 6 131943099 131943099 T G MED23 Missense_Mutation p.K139N 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-21-1071-01 6 170114900 170114900 T G PHF10 Silent p.P244P 0.20 TCGA-21-1071-01 6 27775434 27775434 T C HIST1H2BL Missense_Mutation p.Y84C 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.672) TCGA-21-1071-01 6 28964036 28964036 T G ZNF311 Missense_Mutation p.E248A 0.33 tolerated(0.5) benign(0.015) TCGA-21-1071-01 6 33555414 33555414 C A GGNBP1 Intron 0.35 TCGA-21-1071-01 6 41162281 41162281 C T TREML2 Missense_Mutation p.A223T 0.38 tolerated(0.22) possibly_damaging(0.698) TCGA-21-1071-01 6 43226934 43226934 C A TTBK1 Missense_Mutation p.P392H 0.48 benign(0.014) TCGA-21-1071-01 6 84629158 84629158 A G CYB5R4 Missense_Mutation p.I183M 0.37 deleterious(0) possibly_damaging(0.857) TCGA-21-1071-01 6 90604309 90604309 C T GJA10 Missense_Mutation p.A41V 0.08 deleterious(0.02) probably_damaging(0.996) TCGA-21-1071-01 6 97053851 97053851 T C FHL5 Silent p.P136P 0.35 TCGA-21-1071-01 7 107341590 107341590 G A SLC26A4 Silent p.A584A 0.18 TCGA-21-1071-01 7 111462433 111462433 C A DOCK4 Missense_Mutation p.R972L 0.21 deleterious(0) possibly_damaging(0.809) TCGA-21-1071-01 7 116417470 116417470 C G MET Missense_Mutation p.T1114S 0.08 deleterious(0.01) benign(0.14) TCGA-21-1071-01 7 1197328 1197328 T C ZFAND2A Silent p.P38P 0.22 TCGA-21-1071-01 7 26779509 26779509 T C SKAP2 Missense_Mutation p.K128E 0.16 deleterious(0) probably_damaging(0.999) TCGA-21-1071-01 7 31682945 31682945 C A CCDC129 Missense_Mutation p.T680N 0.22 tolerated(0.49) benign(0.104) TCGA-21-1071-01 7 45753389 45753389 A T ADCY1 Missense_Mutation p.Y1052F 0.18 deleterious(0) probably_damaging(1) TCGA-21-1071-01 7 48284194 48284194 G T ABCA13 Missense_Mutation p.L428F 0.15 benign(0.067) TCGA-21-1071-01 7 82457190 82457190 T A PCLO Missense_Mutation p.Q4781L 0.15 unknown(0) TCGA-21-1071-01 7 82583709 82583709 G A PCLO Missense_Mutation p.S2187F 0.05 unknown(0) TCGA-21-1071-01 7 92027064 92027064 G T ANKIB1 Missense_Mutation p.R808L 0.16 deleterious_low_confidence(0.03) benign(0.001) TCGA-21-1071-01 7 94173810 94173810 A G CASD1 Missense_Mutation p.K482E 0.06 deleterious(0.02) probably_damaging(0.999) TCGA-21-1071-01 7 99997407 99997407 G C PILRA Splice_Site p.X264_splice 0.05 TCGA-21-1071-01 8 10465017 10465017 C A RP1L1 Missense_Mutation p.E2197D 0.18 unknown(0) TCGA-21-1071-01 8 10469221 10469221 G T RP1L1 Missense_Mutation p.A796D 0.21 possibly_damaging(0.895) TCGA-21-1071-01 8 109482068 109482068 G A EMC2 Missense_Mutation p.R126H 0.10 deleterious(0.02) probably_damaging(0.978) TCGA-21-1071-01 8 113267647 113267647 C T CSMD3 Missense_Mutation p.C3291Y 0.19 deleterious(0) probably_damaging(0.916) TCGA-21-1071-01 8 120431513 120431513 T G NOV Missense_Mutation p.C235W 0.07 deleterious(0) probably_damaging(1) TCGA-21-1071-01 8 135614756 135614756 C T ZFAT Silent p.L402L 0.22 TCGA-21-1071-01 8 143856736 143856736 C A LYNX1 Intron 0.12 TCGA-21-1071-01 8 17804751 17804751 T A PCM1 Missense_Mutation p.H280Q 0.18 tolerated(0.05) probably_damaging(0.96) TCGA-21-1071-01 8 35406925 35406925 C G UNC5D Silent p.L73L 0.18 TCGA-21-1071-01 8 37707187 37707187 C - BRF2 Frame_Shift_Del p.V39Sfs*15 0.24 TCGA-21-1071-01 8 37729205 37729205 C A RAB11FIP1 Missense_Mutation p.V1039L 0.08 tolerated_low_confidence(0.09) benign(0.085) TCGA-21-1071-01 8 55538558 55538558 G T RP1 Missense_Mutation p.G706C 0.19 deleterious(0) possibly_damaging(0.906) TCGA-21-1071-01 8 63973891 63973891 C G TTPA Missense_Mutation p.E253Q 0.21 deleterious(0.01) benign(0.077) TCGA-21-1071-01 8 68074067 68074067 A G CSPP1 Missense_Mutation p.I849V 0.10 tolerated(1) benign(0) TCGA-21-1071-01 8 82626221 82626221 C T ZFAND1 Missense_Mutation p.E138K 0.18 tolerated(0.6) benign(0.002) TCGA-21-1071-01 8 86356352 86356352 G T CA3 Silent p.L147L 0.11 TCGA-21-1071-01 8 88885198 88885198 C G DCAF4L2 Missense_Mutation p.Q334H 0.11 deleterious(0.04) possibly_damaging(0.766) TCGA-21-1071-01 9 34306263 34306263 T G KIF24 Missense_Mutation p.Q267P 0.09 deleterious(0) possibly_damaging(0.641) TCGA-21-1071-01 9 35608436 35608436 C T TESK1 Silent p.H310H 0.24 TCGA-21-1071-01 9 79875069 79875069 A G VPS13A Missense_Mutation p.M786V 0.35 deleterious(0.04) benign(0.001) TCGA-21-1071-01 X 118544310 118544310 G A SLC25A43 Silent p.V225V 0.44 TCGA-21-1071-01 X 132437087 132437087 A G GPC4 Silent p.S493S 0.53 TCGA-21-1071-01 X 144905219 144905219 C A SLITRK2 Missense_Mutation p.R426S 0.49 deleterious(0) probably_damaging(1) TCGA-21-1071-01 X 14883178 14883178 A C FANCB Missense_Mutation p.F152C 0.24 tolerated(0.3) benign(0.002) TCGA-21-1071-01 X 152936856 152936856 C T PNCK Intron 0.58 TCGA-21-1071-01 X 153209166 153209166 A C RENBP Silent p.G98G 0.48 TCGA-21-1071-01 X 54275554 54275554 G A WNK3 Missense_Mutation p.P1076L 0.37 tolerated(0.21) benign(0.021) TCGA-21-1071-01 X 71427657 71427657 G T ERCC6L Silent p.I320I 0.45 TCGA-21-1076-01 10 103354462 103354462 G C DPCD Missense_Mutation p.E38Q 0.20 deleterious(0) probably_damaging(1) TCGA-21-1076-01 10 118354352 118354352 G T PNLIPRP1 Silent p.V147V 0.09 TCGA-21-1076-01 10 118354353 118354353 G T PNLIPRP1 Missense_Mutation p.A148S 0.09 deleterious(0) probably_damaging(0.987) TCGA-21-1076-01 10 134008372 134008372 G A DPYSL4 Missense_Mutation p.G113S 0.20 deleterious(0.04) possibly_damaging(0.775) TCGA-21-1076-01 10 48389526 48389526 G C RBP3 Missense_Mutation p.S451C 0.11 deleterious(0.01) probably_damaging(0.992) TCGA-21-1076-01 10 55721612 55721612 A G PCDH15 Missense_Mutation p.V970A 0.12 tolerated(0.18) benign(0.008) TCGA-21-1076-01 10 72530999 72530999 G A TBATA 3'UTR 0.15 TCGA-21-1076-01 10 72531067 72531067 G C TBATA 3'UTR 0.15 TCGA-21-1076-01 10 72531082 72531082 G A TBATA 3'UTR 0.16 TCGA-21-1076-01 10 81317074 81317074 C A SFTPA2 Missense_Mutation p.R213L 0.20 tolerated(0.44) benign(0) TCGA-21-1076-01 10 85981835 85981835 G A LRIT2 Silent p.R498R 0.20 TCGA-21-1076-01 11 119024982 119024982 G A ABCG4 Missense_Mutation p.M123I 0.20 tolerated(0.32) benign(0.01) TCGA-21-1076-01 11 124413505 124413505 A G OR8B12 Silent p.L16L 0.15 TCGA-21-1076-01 11 132082018 132082018 C T NTM Missense_Mutation p.T168I 0.23 tolerated(0.09) benign(0.053) TCGA-21-1076-01 11 132082019 132082019 T C NTM Silent p.T168T 0.24 TCGA-21-1076-01 11 132177700 132177700 T G NTM Missense_Mutation p.V215G 0.12 deleterious(0) probably_damaging(0.997) TCGA-21-1076-01 11 36520129 36520129 C T TRAF6 Missense_Mutation p.D120N 0.24 deleterious(0.01) benign(0.321) TCGA-21-1076-01 11 4615724 4615724 C T OR52I1 Silent p.V152V 0.31 TCGA-21-1076-01 11 4661386 4661386 C A OR51D1 Silent p.A122A 0.21 TCGA-21-1076-01 11 47834559 47834559 G A NUP160 Silent p.C609C 0.11 TCGA-21-1076-01 11 48149573 48149573 G C PTPRJ Silent p.P445P 0.15 TCGA-21-1076-01 11 55702966 55702966 T C OR5I1 Missense_Mutation p.E304G 0.14 tolerated(0.11) benign(0.01) TCGA-21-1076-01 11 56380541 56380541 A G OR5M1 Silent p.T146T 0.16 TCGA-21-1076-01 11 57971606 57971606 T C OR1S2 Silent p.Q16Q 0.22 TCGA-21-1076-01 11 5799488 5799488 A C OR52N5 Missense_Mutation p.L126R 0.10 deleterious(0.02) probably_damaging(0.992) TCGA-21-1076-01 11 65638668 65638668 G A EFEMP2 Silent p.C109C 0.18 TCGA-21-1076-01 11 76750770 76750770 G C B3GNT6 Missense_Mutation p.E59Q 0.31 tolerated(0.58) benign(0.048) TCGA-21-1076-01 11 77727937 77727937 C A KCTD14 Missense_Mutation p.R157L 0.24 deleterious(0) probably_damaging(1) TCGA-21-1076-01 12 104014304 104014304 G T STAB2 Missense_Mutation p.M130I 0.19 tolerated(1) benign(0.006) TCGA-21-1076-01 12 104056674 104056674 C G STAB2 Silent p.A640A 0.19 TCGA-21-1076-01 12 109937553 109937553 G C UBE3B Missense_Mutation p.K352N 0.11 deleterious(0.01) probably_damaging(0.973) TCGA-21-1076-01 12 110565186 110565186 A G IFT81 Translation_Start_Site p.M1? 0.15 deleterious(0) probably_damaging(0.998) TCGA-21-1076-01 12 118520186 118520186 G T VSIG10 Missense_Mutation p.P137H 0.10 deleterious(0) probably_damaging(0.967) TCGA-21-1076-01 12 121690485 121690485 T A CAMKK2 Silent p.L380L 0.13 TCGA-21-1076-01 12 129558726 129558726 C T TMEM132D Silent p.E998E 0.17 TCGA-21-1076-01 12 132502198 132502198 G C EP400 Missense_Mutation p.V1348L 0.18 unknown(0) TCGA-21-1076-01 12 133197898 133197898 C A P2RX2 Nonsense_Mutation p.Y321* 0.10 TCGA-21-1076-01 12 26781091 26781091 A G ITPR2 Missense_Mutation p.I980T 0.22 deleterious(0) possibly_damaging(0.782) TCGA-21-1076-01 12 5687599 5687599 C T ANO2 Silent p.V773V 0.14 TCGA-21-1076-01 12 6840163 6840163 C A COPS7A Intron 0.17 TCGA-21-1076-01 12 76772316 76772316 C A OSBPL8 Missense_Mutation p.A549S 0.23 deleterious(0) possibly_damaging(0.892) TCGA-21-1076-01 12 8051183 8051183 G T NANOGP1 RNA 0.26 TCGA-21-1076-01 12 81205404 81205404 C A LIN7A Missense_Mutation p.S181I 0.21 deleterious(0.05) probably_damaging(0.928) TCGA-21-1076-01 12 98849680 98849680 C G SLC9A7P1 RNA 0.23 TCGA-21-1076-01 13 50115118 50115118 T A RCBTB1 Missense_Mutation p.Y450F 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-21-1076-01 13 99554117 99554117 A T DOCK9 Missense_Mutation p.F473Y 0.17 tolerated(0.21) probably_damaging(0.997) TCGA-21-1076-01 14 105857562 105857562 G T PACS2 Missense_Mutation p.V699L 0.21 tolerated(0.05) benign(0.065) TCGA-21-1076-01 14 106805353 106805353 C G IGHV4-31 Silent p.G70G 0.13 TCGA-21-1076-01 14 20216180 20216180 G T OR4Q3 Silent p.V198V 0.12 TCGA-21-1076-01 14 20665802 20665802 A T OR11G2 Missense_Mutation p.N103I 0.17 deleterious(0) probably_damaging(0.993) TCGA-21-1076-01 14 22337320 22337320 C T TRAV13-1 Silent p.S37S 0.23 TCGA-21-1076-01 14 23345950 23345950 C G LRP10 Missense_Mutation p.P493A 0.15 deleterious(0.04) benign(0.263) TCGA-21-1076-01 14 28734012 28734012 C G BNIP3P1 RNA 0.12 TCGA-21-1076-01 14 31852749 31852749 C T HEATR5A Missense_Mutation p.G232E 0.14 deleterious(0) probably_damaging(0.999) TCGA-21-1076-01 14 47342674 47342674 C G MDGA2 Missense_Mutation p.C905S 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-21-1076-01 14 60921721 60921721 G T C14orf39 Missense_Mutation p.Q501K 0.16 deleterious(0.02) possibly_damaging(0.486) TCGA-21-1076-01 14 61187017 61187017 C G SIX4 Missense_Mutation p.G337A 0.19 tolerated(0.06) probably_damaging(0.997) TCGA-21-1076-01 14 65259873 65259873 C T SPTB Silent p.Q836Q 0.16 TCGA-21-1076-01 14 77844685 77844685 T G SAMD15 Silent p.T308T 0.07 TCGA-21-1076-01 14 79175927 79175927 T C NRXN3 Missense_Mutation p.V157A 0.08 deleterious(0.03) probably_damaging(0.931) TCGA-21-1076-01 14 90756803 90756803 T C NRDE2 Missense_Mutation p.N664S 0.06 tolerated(0.97) benign(0.004) TCGA-21-1076-01 14 91948452 91948452 G A SMEK1 Missense_Mutation p.P128L 0.12 tolerated(0.48) probably_damaging(0.994) TCGA-21-1076-01 14 93107606 93107606 G T RIN3 Missense_Mutation p.R155L 0.12 deleterious(0) unknown(0) TCGA-21-1076-01 14 94711944 94711944 T G PPP4R4 Missense_Mutation p.D455E 0.13 tolerated(0.4) benign(0.002) TCGA-21-1076-01 15 23811490 23811490 A C MKRN3 Silent p.A187A 0.07 TCGA-21-1076-01 15 25351672 25351672 C T SNORD116-29 RNA 0.21 TCGA-21-1076-01 15 25458668 25458668 A G SNORD115-22 3'Flank 0.18 TCGA-21-1076-01 15 25585232 25585232 C T UBE3A Missense_Mutation p.R836K 0.15 deleterious(0.01) possibly_damaging(0.798) TCGA-21-1076-01 15 27128634 27128634 G C GABRA5 Missense_Mutation p.A143P 0.16 deleterious(0) probably_damaging(0.998) TCGA-21-1076-01 15 40681810 40681810 C G KNSTRN Missense_Mutation p.Q197E 0.21 deleterious(0.05) probably_damaging(0.948) TCGA-21-1076-01 15 43531095 43531095 G T TGM5 Missense_Mutation p.S422Y 0.19 tolerated(0.12) possibly_damaging(0.553) TCGA-21-1076-01 15 50545843 50545843 G T HDC Silent p.T247T 0.04 TCGA-21-1076-01 15 50545844 50545844 G T HDC Missense_Mutation p.T247N 0.04 deleterious(0) probably_damaging(0.996) TCGA-21-1076-01 15 59224609 59224609 T C SLTM Missense_Mutation p.I66V 0.09 deleterious(0) unknown(0) TCGA-21-1076-01 15 65489148 65489148 C T CILP Missense_Mutation p.S1159N 0.19 tolerated(0.07) benign(0.135) TCGA-21-1076-01 15 73624626 73624626 T A HCN4 Missense_Mutation p.H406L 0.10 deleterious(0.02) unknown(0) TCGA-21-1076-01 15 74559107 74559107 C T CCDC33 Silent p.P136P 0.14 TCGA-21-1076-01 15 74627562 74627562 G T CCDC33 Intron 0.14 TCGA-21-1076-01 15 74627563 74627563 G T CCDC33 Intron 0.14 TCGA-21-1076-01 15 78640281 78640281 G A CRABP1 Missense_Mutation p.D126N 0.14 deleterious(0.05) benign(0.076) TCGA-21-1076-01 15 78879022 78879022 G T CHRNA5 Missense_Mutation p.W98C 0.10 deleterious(0) probably_damaging(1) TCGA-21-1076-01 15 89172627 89172627 G T AEN Silent p.L237L 0.07 TCGA-21-1076-01 16 1250434 1250434 G A CACNA1H Missense_Mutation p.E328K 0.17 tolerated(0.65) possibly_damaging(0.542) TCGA-21-1076-01 16 20476943 20476943 C T ACSM2A Silent p.A94A 0.12 TCGA-21-1076-01 16 28734633 28734633 C A EIF3C Missense_Mutation p.P309T 0.09 tolerated(0.05) probably_damaging(0.999) TCGA-21-1076-01 16 81733360 81733360 G A CMIP Missense_Mutation p.G570D 0.14 tolerated(0.23) benign(0.158) TCGA-21-1076-01 17 10356250 10356250 C A MYH4 Splice_Site p.X1038_splice 0.18 TCGA-21-1076-01 17 11672439 11672439 G T DNAH9 Missense_Mutation p.A2449S 0.21 benign(0.038) TCGA-21-1076-01 17 15222447 15222447 C A TEKT3 Silent p.L227L 0.08 TCGA-21-1076-01 17 16612188 16612188 C T CCDC144A Nonsense_Mutation p.Q273* 0.14 TCGA-21-1076-01 17 18395776 18395776 G T LGALS9C Missense_Mutation p.M226I 0.08 tolerated(0.49) benign(0) TCGA-21-1076-01 17 3301392 3301392 G T OR1E1 Missense_Mutation p.L105M 0.25 tolerated(0.32) benign(0.027) TCGA-21-1076-01 17 45916811 45916811 C A SCRN2 Missense_Mutation p.Q185H 0.23 deleterious(0.04) possibly_damaging(0.726) TCGA-21-1076-01 17 5086129 5086129 G C ZNF594 Missense_Mutation p.L475V 0.22 deleterious(0.01) probably_damaging(0.992) TCGA-21-1076-01 17 58151157 58151157 G C HEATR6 Missense_Mutation p.L140V 0.13 deleterious(0.03) probably_damaging(0.994) TCGA-21-1076-01 17 65145983 65145983 C A HELZ Missense_Mutation p.Q825H 0.19 deleterious(0) probably_damaging(1) TCGA-21-1076-01 17 71391492 71391492 C A SDK2 Missense_Mutation p.V1132L 0.15 tolerated(0.1) benign(0.377) TCGA-21-1076-01 17 7578442 7578442 T C TP53 Missense_Mutation p.Y163C 0.27 deleterious(0) probably_damaging(0.999) TCGA-21-1076-01 18 32428337 32428337 C A DTNA Missense_Mutation p.S388Y 0.13 deleterious(0.03) benign(0.382) TCGA-21-1076-01 18 33800110 33800110 G A MOCOS Silent p.Q630Q 0.12 TCGA-21-1076-01 18 77895149 77895149 C T ADNP2 Missense_Mutation p.A618V 0.15 deleterious(0.01) probably_damaging(0.979) TCGA-21-1076-01 19 10157814 10157814 C A C3P1 RNA 0.15 TCGA-21-1076-01 19 10444585 10444585 G T ICAM3 Missense_Mutation p.T531K 0.11 tolerated(0.22) possibly_damaging(0.466) TCGA-21-1076-01 19 11118656 11118656 G T SMARCA4 Missense_Mutation p.D694Y 0.10 possibly_damaging(0.463) TCGA-21-1076-01 19 12223680 12223680 C G ZNF788 Missense_Mutation p.H440D 0.25 deleterious(0) probably_damaging(0.937) TCGA-21-1076-01 19 12769297 12769297 G C MAN2B1 Missense_Mutation p.L352V 0.05 deleterious(0.03) benign(0.261) TCGA-21-1076-01 19 16910890 16910890 C G NWD1 Missense_Mutation p.T1218S 0.19 tolerated(0.19) benign(0.138) TCGA-21-1076-01 19 19168485 19168485 G C ARMC6 3'UTR 0.17 TCGA-21-1076-01 19 22154987 22154987 C A ZNF208 Missense_Mutation p.C950F 0.25 deleterious(0) unknown(0) TCGA-21-1076-01 19 24310036 24310036 G - ZNF254 Frame_Shift_Del p.G412Afs*15 0.14 TCGA-21-1076-01 19 2832368 2832368 A T ZNF554 Silent p.S107S 0.15 TCGA-21-1076-01 19 31769875 31769875 A G TSHZ3 Missense_Mutation p.L275P 0.05 deleterious(0) probably_damaging(1) TCGA-21-1076-01 19 32971316 32971316 A G DPY19L3 Missense_Mutation p.I614M 0.04 tolerated(0.1) benign(0.395) TCGA-21-1076-01 19 33132955 33132955 G C ANKRD27 Silent p.L293L 0.03 TCGA-21-1076-01 19 37117937 37117942 TATGAA - ZNF382 In_Frame_Del p.Y380_E381del 0.09 TCGA-21-1076-01 19 37734025 37734025 A T ZNF383 Missense_Mutation p.Q296L 0.17 tolerated(0.07) probably_damaging(0.96) TCGA-21-1076-01 19 43576011 43576011 C A PSG2 Missense_Mutation p.A269S 0.51 tolerated(0.08) probably_damaging(0.98) TCGA-21-1076-01 19 44536384 44536384 C T ZNF222 Missense_Mutation p.S226L 0.06 deleterious(0.05) benign(0.149) TCGA-21-1076-01 19 44844670 44844670 C T ZNF112 Missense_Mutation p.A14T 0.37 deleterious(0) probably_damaging(0.999) TCGA-21-1076-01 19 45029245 45029245 C G CEACAM20 RNA 0.13 TCGA-21-1076-01 19 4839190 4839190 C A PLIN3 3'UTR 0.17 TCGA-21-1076-01 19 5077390 5077390 G T KDM4B Missense_Mutation p.G230V 0.12 probably_damaging(0.914) TCGA-21-1076-01 19 51377982 51377982 G T KLK2 Missense_Mutation p.V18L 0.16 tolerated(0.61) benign(0.002) TCGA-21-1076-01 19 54803681 54803681 C G LILRA3 Missense_Mutation p.R48T 0.05 deleterious(0.01) possibly_damaging(0.863) TCGA-21-1076-01 19 55174291 55174291 G T LILRB4 5'UTR 0.27 TCGA-21-1076-01 19 55175765 55175765 C A LILRB4 Missense_Mutation p.H162N 0.17 tolerated(0.34) possibly_damaging(0.837) TCGA-21-1076-01 19 56390285 56390285 T C NLRP4 Missense_Mutation p.L941P 0.04 deleterious(0) probably_damaging(0.998) TCGA-21-1076-01 19 57286711 57286711 G C ZIM2 Missense_Mutation p.T310S 0.18 tolerated(0.61) benign(0.008) TCGA-21-1076-01 19 6937277 6937277 C A EMR1 Missense_Mutation p.A802D 0.16 deleterious(0) probably_damaging(0.977) TCGA-21-1076-01 19 6974574 6974574 C A EMR4P RNA 0.30 TCGA-21-1076-01 1 1021391 1021391 C A C1orf159 Silent p.G104G 0.14 TCGA-21-1076-01 1 115829224 115829224 C G NGF Missense_Mutation p.G65R 0.17 tolerated(0.13) probably_damaging(1) TCGA-21-1076-01 1 11918371 11918371 G T NPPB Nonsense_Mutation p.Y96* 0.20 TCGA-21-1076-01 1 120057197 120057197 C A HSD3B1 Missense_Mutation p.Q351K 0.24 tolerated(0.2) benign(0.018) TCGA-21-1076-01 1 152784937 152784937 G T LCE1B Missense_Mutation p.Q5H 0.13 deleterious_low_confidence(0) unknown(0) TCGA-21-1076-01 1 156617423 156617423 T A BCAN Missense_Mutation p.L197H 0.10 tolerated(0.65) probably_damaging(0.997) TCGA-21-1076-01 1 156841432 156841432 A G NTRK1 Silent p.P245P 0.12 TCGA-21-1076-01 1 157648465 157648465 C A FCRL3 3'UTR 0.08 TCGA-21-1076-01 1 157666880 157666880 C A FCRL3 Intron 0.09 TCGA-21-1076-01 1 157737371 157737371 G A FCRL2 Intron 0.06 TCGA-21-1076-01 1 158669530 158669530 G T OR6K2 Missense_Mutation p.H305N 0.29 tolerated(0.3) benign(0.09) TCGA-21-1076-01 1 158812004 158812004 C T MNDA Missense_Mutation p.H21Y 0.08 tolerated(0.12) possibly_damaging(0.852) TCGA-21-1076-01 1 163138098 163138098 G A RGS5 Silent p.D35D 0.17 TCGA-21-1076-01 1 167096912 167096912 G T DUSP27 Missense_Mutation p.R848S 0.11 tolerated(0.06) benign(0.027) TCGA-21-1076-01 1 167097009 167097009 G T DUSP27 Missense_Mutation p.G881C 0.11 deleterious(0.01) possibly_damaging(0.653) TCGA-21-1076-01 1 174976282 174976282 G A CACYBP Missense_Mutation p.M127I 0.12 deleterious(0.01) probably_damaging(0.948) TCGA-21-1076-01 1 175049335 175049335 C A TNN Missense_Mutation p.T274K 0.09 deleterious(0) probably_damaging(0.998) TCGA-21-1076-01 1 175293589 175293589 A T TNR Missense_Mutation p.V1287E 0.07 deleterious(0) probably_damaging(1) TCGA-21-1076-01 1 176564697 176564697 C A PAPPA2 Missense_Mutation p.R653S 0.11 tolerated(0.7) benign(0.097) TCGA-21-1076-01 1 205238663 205238663 C T TMCC2 Silent p.L445L 0.18 TCGA-21-1076-01 1 207789970 207789970 A G CR1 Missense_Mutation p.T2238A 0.08 tolerated(0.72) benign(0.265) TCGA-21-1076-01 1 209907664 209907664 C A HSD11B1 Missense_Mutation p.A226E 0.16 tolerated(0.25) benign(0.007) TCGA-21-1076-01 1 215824045 215824045 A T USH2A Missense_Mutation p.H4744Q 0.08 benign(0.045) TCGA-21-1076-01 1 228285621 228285621 G A ARF1 Silent p.R151R 0.10 TCGA-21-1076-01 1 229635458 229635458 C T NUP133 Silent p.K207K 0.09 TCGA-21-1076-01 1 232574961 232574961 G A SIPA1L2 Silent p.D1308D 0.05 TCGA-21-1076-01 1 237801698 237801698 G T RYR2 Missense_Mutation p.Q2278H 0.18 possibly_damaging(0.586) TCGA-21-1076-01 1 237806707 237806707 C A RYR2 Silent p.G2434G 0.06 TCGA-21-1076-01 1 237863674 237863674 C A RYR2 Missense_Mutation p.Q3092K 0.31 benign(0.175) TCGA-21-1076-01 1 248023988 248023988 G T TRIM58 Missense_Mutation p.V164L 0.09 tolerated(0.31) benign(0.004) TCGA-21-1076-01 1 248023990 248023990 G T TRIM58 Silent p.V164V 0.08 TCGA-21-1076-01 1 248262938 248262938 C A OR2L13 Silent p.G87G 0.09 TCGA-21-1076-01 1 34312521 34312521 T A CSMD2 Missense_Mutation p.N293Y 0.22 deleterious(0) probably_damaging(0.932) TCGA-21-1076-01 1 35469607 35469607 C A ZMYM6 Splice_Site p.X652_splice 0.10 TCGA-21-1076-01 1 3703673 3703673 C T LRRC47 Missense_Mutation p.E273K 0.08 tolerated(0.17) benign(0.008) TCGA-21-1076-01 1 48713333 48713333 C A SLC5A9 3'UTR 0.15 TCGA-21-1076-01 1 6195338 6195338 G T CHD5 Missense_Mutation p.P941Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-21-1076-01 1 64011719 64011719 C G EFCAB7 Missense_Mutation p.Q313E 0.06 tolerated(0.28) benign(0.067) TCGA-21-1076-01 1 70482199 70482199 G T LRRC7 Missense_Mutation p.L396F 0.07 deleterious(0.05) probably_damaging(0.997) TCGA-21-1076-01 1 70518708 70518708 G T LRRC7 Splice_Site p.X1333_splice 0.12 TCGA-21-1076-01 1 75175781 75175781 C A CRYZ Splice_Site p.X210_splice 0.09 TCGA-21-1076-01 1 78183552 78183552 T C USP33 Missense_Mutation p.S671G 0.10 tolerated(0.65) benign(0.026) TCGA-21-1076-01 20 13463980 13463980 A G TASP1 Silent p.C293C 0.16 TCGA-21-1076-01 20 20033180 20033180 T A CRNKL1 Missense_Mutation p.Q97L 0.26 tolerated_low_confidence(1) benign(0) TCGA-21-1076-01 20 29891228 29891228 C A DEFB116 Missense_Mutation p.K32N 0.15 tolerated(0.05) benign(0.031) TCGA-21-1076-01 20 31023858 31023858 A G ASXL1 Missense_Mutation p.S1115G 0.17 tolerated(0.07) benign(0.013) TCGA-21-1076-01 20 4163106 4163106 A T SMOX Missense_Mutation p.H327L 0.18 deleterious(0) probably_damaging(0.989) TCGA-21-1076-01 20 44166708 44166708 T A WFDC6 Missense_Mutation p.E39D 0.16 deleterious(0.02) benign(0.242) TCGA-21-1076-01 20 47249075 47249075 C T PREX1 Missense_Mutation p.G1457D 0.12 tolerated(0.08) benign(0.04) TCGA-21-1076-01 20 51870385 51870385 G T TSHZ2 Missense_Mutation p.A130S 0.14 tolerated(0.29) probably_damaging(0.998) TCGA-21-1076-01 20 55027803 55027803 C A CASS4 Missense_Mutation p.S524Y 0.16 deleterious(0.01) probably_damaging(0.934) TCGA-21-1076-01 20 61907487 61907487 G A ARFGAP1 Silent p.V35V 0.18 TCGA-21-1076-01 21 10862921 10862921 A G IGHV1OR21-1 Missense_Mutation p.S73G 0.05 tolerated(0.98) benign(0.002) TCGA-21-1076-01 22 19384472 19384472 T C HIRA Splice_Site p.X165_splice 0.15 TCGA-21-1076-01 22 30198081 30198081 G A ASCC2 Silent p.C490C 0.18 TCGA-21-1076-01 22 32810391 32810391 C A BPIFC Missense_Mutation p.D475Y 0.07 deleterious(0) probably_damaging(0.996) TCGA-21-1076-01 22 40161370 40161370 C A ENTHD1 Missense_Mutation p.Q359H 0.12 deleterious(0.04) probably_damaging(0.979) TCGA-21-1076-01 22 44280221 44280221 C G PNPLA5 Silent p.L318L 0.15 TCGA-21-1076-01 22 44342622 44342622 G T PNPLA3 3'UTR 0.17 TCGA-21-1076-01 22 50901147 50901147 C A SBF1 Splice_Site p.X657_splice 0.10 TCGA-21-1076-01 22 50961585 50961585 C T NCAPH2 Missense_Mutation p.S557F 0.09 deleterious(0) probably_damaging(1) TCGA-21-1076-01 2 110849307 110849307 T C MALL Missense_Mutation p.H49R 0.11 tolerated(0.77) benign(0.002) TCGA-21-1076-01 2 120439364 120439364 G T TMEM177 Nonstop_Mutation p.*312Lext*74 0.15 TCGA-21-1076-01 2 131521433 131521434 - A AMER3 Frame_Shift_Ins p.R597Kfs*14 0.20 TCGA-21-1076-01 2 132276646 132276646 C T AC093838.4 RNA 0.17 TCGA-21-1076-01 2 141253202 141253202 T C LRP1B Missense_Mutation p.Y2989C 0.13 possibly_damaging(0.759) TCGA-21-1076-01 2 150426549 150426549 C T MMADHC Missense_Mutation p.G277E 0.16 deleterious(0) probably_damaging(1) TCGA-21-1076-01 2 152222726 152222726 C A TNFAIP6 Missense_Mutation p.P130Q 0.23 tolerated(0.14) benign(0.089) TCGA-21-1076-01 2 165997321 165997321 C T SCN3A Missense_Mutation p.R620Q 0.10 tolerated(0.07) probably_damaging(0.997) TCGA-21-1076-01 2 166848153 166848153 C A SCN1A Nonsense_Mutation p.E1878* 0.10 TCGA-21-1076-01 2 177054814 177054814 C A HOXD1 Missense_Mutation p.P311T 0.12 tolerated_low_confidence(0.09) benign(0.002) TCGA-21-1076-01 2 178285079 178285079 G - AGPS Frame_Shift_Del p.R117Gfs*22 0.10 TCGA-21-1076-01 2 179397113 179397113 A G TTN Silent p.Y34743Y 0.16 TCGA-21-1076-01 2 179397773 179397773 G C TTN Missense_Mutation p.F34523L 0.07 TCGA-21-1076-01 2 179401927 179401927 T C TTN Silent p.L33303L 0.14 TCGA-21-1076-01 2 179582845 179582845 A T TTN Silent p.S8296S 0.22 TCGA-21-1076-01 2 179597012 179597012 G A TTN Nonsense_Mutation p.Q5562* 0.17 TCGA-21-1076-01 2 185801324 185801324 C A ZNF804A Missense_Mutation p.P401T 0.10 tolerated(0.07) benign(0.254) TCGA-21-1076-01 2 191897726 191897726 C G STAT4 Missense_Mutation p.D668H 0.10 deleterious(0) probably_damaging(0.989) TCGA-21-1076-01 2 1921047 1921047 G A MYT1L Silent p.H514H 0.06 TCGA-21-1076-01 2 200193597 200193597 G T SATB2 Missense_Mutation p.P404T 0.11 deleterious(0) probably_damaging(0.997) TCGA-21-1076-01 2 206911302 206911302 T A INO80D Silent p.P333P 0.16 TCGA-21-1076-01 2 210968907 210968907 C T KANSL1L Missense_Mutation p.C450Y 0.08 tolerated(0.07) benign(0.15) TCGA-21-1076-01 2 211447414 211447414 T A CPS1 Missense_Mutation p.I207N 0.06 deleterious(0) possibly_damaging(0.807) TCGA-21-1076-01 2 220161512 220161512 T C PTPRN Missense_Mutation p.S757G 0.09 tolerated(0.13) benign(0.029) TCGA-21-1076-01 2 220162785 220162785 C G PTPRN Missense_Mutation p.S570T 0.09 tolerated(0.58) benign(0.001) TCGA-21-1076-01 2 220315888 220315888 G T SPEG Missense_Mutation p.G715V 0.19 probably_damaging(0.993) TCGA-21-1076-01 2 230911341 230911341 C - SLC16A14 Frame_Shift_Del p.T168Pfs*7 0.14 TCGA-21-1076-01 2 233599863 233599863 A G GIGYF2 Splice_Site 0.18 TCGA-21-1076-01 2 234365572 234365572 T A DGKD Nonsense_Mutation p.Y801* 0.16 TCGA-21-1076-01 2 241418928 241418928 C T ANKMY1 3'UTR 0.20 TCGA-21-1076-01 2 27858012 27858012 C T GPN1 Silent p.S159S 0.13 TCGA-21-1076-01 2 27858030 27858030 C T GPN1 Silent p.V165V 0.12 TCGA-21-1076-01 2 27861080 27861080 C T GPN1 Silent p.I190I 0.13 TCGA-21-1076-01 2 29293539 29293539 G T C2orf71 Missense_Mutation p.R1197S 0.33 tolerated(0.06) benign(0.203) TCGA-21-1076-01 2 32361975 32361975 A G SPAST Missense_Mutation p.R451G 0.33 tolerated(0.07) probably_damaging(0.993) TCGA-21-1076-01 2 32476605 32476605 G T NLRC4 Missense_Mutation p.H110N 0.40 tolerated(0.48) benign(0.001) TCGA-21-1076-01 2 48915007 48915007 G T LHCGR Nonsense_Mutation p.C643* 0.13 TCGA-21-1076-01 2 49190478 49190478 C G FSHR Missense_Mutation p.W494C 0.11 deleterious(0) probably_damaging(1) TCGA-21-1076-01 2 50280565 50280565 C G NRXN1 Silent p.V1364V 0.11 TCGA-21-1076-01 2 62115720 62115720 G T CCT4 5'UTR 0.62 TCGA-21-1076-01 2 79364389 79364389 G A REG1P RNA 0.13 TCGA-21-1076-01 2 89475975 89475975 C - IGKV2-24 Frame_Shift_Del p.G66Afs*7 0.14 TCGA-21-1076-01 2 89986898 89986898 G T IGKV2D-29 Missense_Mutation p.W60L 0.10 deleterious(0.02) possibly_damaging(0.608) TCGA-21-1076-01 2 90121864 90121864 C A IGKV1D-17 Missense_Mutation p.Q28K 0.15 deleterious(0.01) probably_damaging(0.977) TCGA-21-1076-01 3 100034982 100034982 T A TBC1D23 Silent p.R546R 0.12 TCGA-21-1076-01 3 100035014 100035014 A C TBC1D23 Missense_Mutation p.E557A 0.09 deleterious(0.02) possibly_damaging(0.787) TCGA-21-1076-01 3 108568085 108568085 C A TRAT1 Missense_Mutation p.A96D 0.11 tolerated(0.37) benign(0.066) TCGA-21-1076-01 3 108568086 108568086 C A TRAT1 Silent p.A96A 0.11 TCGA-21-1076-01 3 11400049 11400049 G A ATG7 Missense_Mutation p.R481Q 0.19 deleterious(0) probably_damaging(1) TCGA-21-1076-01 3 119180955 119180955 T C TMEM39A 5'UTR 0.29 TCGA-21-1076-01 3 121414037 121414037 A G GOLGB1 Missense_Mutation p.L1778P 0.12 benign(0.02) TCGA-21-1076-01 3 124458954 124458954 G T UMPS Nonsense_Mutation p.E356* 0.13 TCGA-21-1076-01 3 1262453 1262453 C A CNTN6 Silent p.V46V 0.26 TCGA-21-1076-01 3 134967254 134967254 C T EPHB1 Missense_Mutation p.R865W 0.21 deleterious(0) probably_damaging(1) TCGA-21-1076-01 3 13978947 13978947 C A FGD5P1 3'Flank 0.38 TCGA-21-1076-01 3 150661715 150661715 C T CLRN1 Intron 0.08 TCGA-21-1076-01 3 160225962 160225962 T C KPNA4 Silent p.L435L 0.12 TCGA-21-1076-01 3 165548177 165548177 T C BCHE Silent p.G215G 0.15 TCGA-21-1076-01 3 165548626 165548626 G T BCHE Missense_Mutation p.L66I 0.27 tolerated(0.35) benign(0.001) TCGA-21-1076-01 3 167039936 167039936 T C ZBBX Missense_Mutation p.M318V 0.34 tolerated(0.09) benign(0.121) TCGA-21-1076-01 3 186508170 186508170 C G RFC4 Missense_Mutation p.G276A 0.11 tolerated(0.72) benign(0.005) TCGA-21-1076-01 3 194877236 194877236 C G XXYLT1 Missense_Mutation p.D243H 0.05 tolerated(0.07) benign(0.304) TCGA-21-1076-01 3 195492241 195492241 C G MUC4 Missense_Mutation p.K4566N 0.13 possibly_damaging(0.482) TCGA-21-1076-01 3 21706423 21706423 A T ZNF385D Silent p.P40P 0.17 TCGA-21-1076-01 3 37365749 37365749 G T GOLGA4 Missense_Mutation p.G813V 0.27 possibly_damaging(0.462) TCGA-21-1076-01 3 38802845 38802845 G A SCN10A Missense_Mutation p.H241Y 0.34 deleterious(0) probably_damaging(0.962) TCGA-21-1076-01 3 38962736 38962736 G C SCN11A Silent p.V241V 0.05 TCGA-21-1076-01 3 39554986 39554986 G A MOBP 3'UTR 0.28 TCGA-21-1076-01 3 44935188 44935188 G T TGM4 Splice_Site p.X183_splice 0.17 TCGA-21-1076-01 3 47043973 47043973 G A NBEAL2 Missense_Mutation p.R1755H 0.12 tolerated(0.08) benign(0.017) TCGA-21-1076-01 3 52820992 52820992 C A ITIH1 Missense_Mutation p.L589M 0.32 deleterious(0.02) possibly_damaging(0.863) TCGA-21-1076-01 3 66023687 66023687 G C MAGI1 Missense_Mutation p.F99L 0.26 tolerated(1) benign(0.003) TCGA-21-1076-01 3 93595823 93595823 C A PROS1 Silent p.L619L 0.14 TCGA-21-1076-01 3 97851588 97851588 G T OR5H1 Missense_Mutation p.G16V 0.21 deleterious(0) probably_damaging(1) TCGA-21-1076-01 3 97868313 97868313 C A OR5H14 Missense_Mutation p.F28L 0.17 deleterious(0.01) benign(0.32) TCGA-21-1076-01 4 122592701 122592701 C A ANXA5 Splice_Site p.X241_splice 0.12 TCGA-21-1076-01 4 139980456 139980459 CCAA - ELF2 Frame_Shift_Del p.V475Efs*6 0.22 TCGA-21-1076-01 4 153690989 153690989 T A TIGD4 Missense_Mutation p.T390S 0.25 tolerated(0.95) benign(0.002) TCGA-21-1076-01 4 156632156 156632156 C G GUCY1A3 Missense_Mutation p.S280W 0.20 deleterious(0) probably_damaging(0.999) TCGA-21-1076-01 4 185012314 185012314 C T ENPP6 3'UTR 0.33 TCGA-21-1076-01 4 69811054 69811054 C A UGT2A3 Missense_Mutation p.L278F 0.11 deleterious(0.03) possibly_damaging(0.58) TCGA-21-1076-01 4 71509751 71509751 C T ENAM Nonsense_Mutation p.Q870* 0.17 TCGA-21-1076-01 4 72316226 72316226 G T SLC4A4 Nonsense_Mutation p.E392* 0.12 TCGA-21-1076-01 4 88535380 88535380 T C DSPP Silent p.N522N 0.27 TCGA-21-1076-01 4 91549316 91549316 G T CCSER1 Missense_Mutation p.R622I 0.25 deleterious(0) probably_damaging(0.997) TCGA-21-1076-01 5 1238097 1238097 G T SLC6A18 Silent p.L218L 0.16 TCGA-21-1076-01 5 13885145 13885145 T A DNAH5 Missense_Mutation p.E979V 0.16 benign(0.403) TCGA-21-1076-01 5 140216232 140216232 G A PCDHA7 Missense_Mutation p.R755Q 0.16 tolerated_low_confidence(0.12) benign(0.01) TCGA-21-1076-01 5 143200 143200 G A PLEKHG4B Missense_Mutation p.G150S 0.18 tolerated(1) benign(0.016) TCGA-21-1076-01 5 158141190 158141190 C A EBF1 Nonsense_Mutation p.E376* 0.18 TCGA-21-1076-01 5 160031014 160031014 A T ATP10B Silent p.A1065A 0.16 TCGA-21-1076-01 5 176759097 176759097 C A LMAN2 Missense_Mutation p.R354L 0.15 deleterious(0) probably_damaging(0.987) TCGA-21-1076-01 5 33662024 33662024 G T ADAMTS12 Missense_Mutation p.T346N 0.21 deleterious(0) probably_damaging(0.999) TCGA-21-1076-01 5 41061722 41061722 G T MROH2B Missense_Mutation p.L189M 0.11 tolerated(0.08) possibly_damaging(0.754) TCGA-21-1076-01 5 5190155 5190155 G A ADAMTS16 Missense_Mutation p.M373I 0.16 tolerated(0.85) benign(0.004) TCGA-21-1076-01 5 73163721 73163721 C T ARHGEF28 Missense_Mutation p.P725S 0.13 tolerated(0.52) benign(0.034) TCGA-21-1076-01 5 76932928 76932928 G T OTP Silent p.A55A 0.24 TCGA-21-1076-01 5 86674274 86674274 G A RASA1 Missense_Mutation p.M802I 0.20 deleterious(0) probably_damaging(0.917) TCGA-21-1076-01 5 89953848 89953848 C T GPR98 Missense_Mutation p.P1502L 0.18 possibly_damaging(0.908) TCGA-21-1076-01 6 105219949 105219949 C A HACE1 Missense_Mutation p.G622V 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-21-1076-01 6 105548839 105548839 C A BVES 3'UTR 0.35 TCGA-21-1076-01 6 106555118 106555118 G T PRDM1 Silent p.V745V 0.13 TCGA-21-1076-01 6 108840991 108840991 T C LACE1 Missense_Mutation p.M432T 0.16 deleterious(0) benign(0.063) TCGA-21-1076-01 6 133802602 133802602 A T EYA4 Silent p.G324G 0.13 TCGA-21-1076-01 6 135271188 135271188 C A ALDH8A1 Missense_Mutation p.A2S 0.09 tolerated_low_confidence(0.17) benign(0.021) TCGA-21-1076-01 6 135271189 135271189 C A ALDH8A1 Translation_Start_Site p.M1? 0.09 deleterious_low_confidence(0.01) benign(0.265) TCGA-21-1076-01 6 13592056 13592056 C T SIRT5 Silent p.V135V 0.24 TCGA-21-1076-01 6 137466874 137466874 C A IL22RA2 Nonsense_Mutation p.E227* 0.19 TCGA-21-1076-01 6 144794931 144794931 G A UTRN Missense_Mutation p.D1048N 0.06 deleterious(0.03) benign(0.168) TCGA-21-1076-01 6 145161969 145161969 G T UTRN Splice_Site p.X3424_splice 0.12 TCGA-21-1076-01 6 152415692 152415692 C A ESR1 Silent p.I514I 0.08 TCGA-21-1076-01 6 167728874 167728874 G A UNC93A Silent p.P436P 0.11 TCGA-21-1076-01 6 26020744 26020744 G T HIST1H3A Silent p.R9R 0.14 TCGA-21-1076-01 6 29574954 29574954 G A GABBR1 Silent p.Y678Y 0.27 TCGA-21-1076-01 6 33756175 33756175 T A LEMD2 Missense_Mutation p.Q240L 0.25 tolerated(0.09) benign(0) TCGA-21-1076-01 6 41250247 41250247 C A TREM1 Missense_Mutation p.V98F 0.06 deleterious(0) probably_damaging(0.999) TCGA-21-1076-01 6 46111159 46111159 C G ENPP4 Missense_Mutation p.P382A 0.06 tolerated(0.39) benign(0.077) TCGA-21-1076-01 6 51948026 51948026 G T PKHD1 Missense_Mutation p.P27H 0.34 deleterious(0) probably_damaging(1) TCGA-21-1076-01 6 66063359 66063359 C A EYS Missense_Mutation p.G484V 0.13 tolerated(0.25) benign(0.148) TCGA-21-1076-01 6 74063882 74063882 G C DPPA5 Missense_Mutation p.P23A 0.09 deleterious(0.01) possibly_damaging(0.814) TCGA-21-1076-01 6 85446855 85446855 C A TBX18 Missense_Mutation p.V458L 0.16 tolerated(0.25) possibly_damaging(0.785) TCGA-21-1076-01 6 86332363 86332363 T G SYNCRIP Missense_Mutation p.K282T 0.14 deleterious(0) probably_damaging(0.999) TCGA-21-1076-01 6 87964863 87964863 G T ZNF292 Missense_Mutation p.G506C 0.15 deleterious(0.03) possibly_damaging(0.469) TCGA-21-1076-01 6 88311521 88311521 G T ORC3 Silent p.G33G 0.15 TCGA-21-1076-01 6 89974291 89974291 G T GABRR2 Missense_Mutation p.T309K 0.10 deleterious(0.04) probably_damaging(0.928) TCGA-21-1076-01 7 100679806 100679806 C A MUC17 Silent p.A1703A 0.27 TCGA-21-1076-01 7 103202279 103202279 A G RELN Missense_Mutation p.C1778R 0.09 deleterious(0) probably_damaging(0.997) TCGA-21-1076-01 7 105192040 105192040 A G RINT1 Missense_Mutation p.M453V 0.24 deleterious(0.04) benign(0.038) TCGA-21-1076-01 7 107600135 107600135 C T LAMB1 Splice_Site p.X820_splice 0.09 TCGA-21-1076-01 7 113519426 113519426 G T PPP1R3A Missense_Mutation p.T574N 0.24 tolerated(0.48) benign(0.002) TCGA-21-1076-01 7 115596774 115596774 G A TFEC Missense_Mutation p.A114V 0.07 tolerated(0.05) benign(0.041) TCGA-21-1076-01 7 119915193 119915193 G C KCND2 Missense_Mutation p.Q169H 0.20 deleterious(0) benign(0.299) TCGA-21-1076-01 7 123594517 123594517 T A SPAM1 Missense_Mutation p.L298H 0.15 deleterious(0) probably_damaging(0.992) TCGA-21-1076-01 7 127251692 127251692 G A PAX4 Silent p.A262A 0.28 TCGA-21-1076-01 7 128484996 128484996 G T FLNC Silent p.R1159R 0.10 TCGA-21-1076-01 7 129095154 129095154 G T STRIP2 Missense_Mutation p.G259V 0.16 deleterious(0) probably_damaging(0.958) TCGA-21-1076-01 7 134613549 134613549 G T CALD1 Missense_Mutation p.R39L 0.24 deleterious(0.03) unknown(0) TCGA-21-1076-01 7 148515074 148515074 C G EZH2 Missense_Mutation p.E379Q 0.07 tolerated(0.17) possibly_damaging(0.708) TCGA-21-1076-01 7 149530996 149530996 C T ZNF862 5'Flank 0.20 TCGA-21-1076-01 7 150174540 150174540 C G GIMAP8 Missense_Mutation p.T557R 0.22 tolerated(0.05) benign(0.127) TCGA-21-1076-01 7 150696174 150696174 G T NOS3 Splice_Site p.X319_splice 0.24 TCGA-21-1076-01 7 150864214 150864214 C A GBX1 Missense_Mutation p.G141V 0.16 tolerated(0.18) benign(0.012) TCGA-21-1076-01 7 158738313 158738313 G C WDR60 Missense_Mutation p.G1015A 0.26 tolerated(0.17) benign(0) TCGA-21-1076-01 7 19184779 19184779 C A FERD3L Silent p.V69V 0.11 TCGA-21-1076-01 7 38393494 38393494 C A TRGV4 Missense_Mutation p.G59V 0.11 deleterious(0) probably_damaging(0.993) TCGA-21-1076-01 7 50671727 50671727 G T GRB10 Missense_Mutation p.H504Q 0.07 tolerated(0.98) benign(0.009) TCGA-21-1076-01 7 6777127 6777127 G T PMS2CL RNA 0.16 TCGA-21-1076-01 7 72413633 72413633 C T POM121 Missense_Mutation p.T769M 0.10 deleterious(0.04) benign(0.157) TCGA-21-1076-01 7 72734219 72734219 G T TRIM50 Missense_Mutation p.S141Y 0.17 tolerated(0.06) probably_damaging(0.909) TCGA-21-1076-01 7 86416062 86416062 C A GRM3 Nonsense_Mutation p.Y318* 0.17 TCGA-21-1076-01 7 87536933 87536933 G T DBF4 Missense_Mutation p.D494Y 0.29 tolerated(0.23) benign(0.003) TCGA-21-1076-01 7 88964364 88964364 G C ZNF804B Missense_Mutation p.G690R 0.06 tolerated(0.09) benign(0.066) TCGA-21-1076-01 7 92733667 92733667 T C SAMD9 Missense_Mutation p.I582V 0.09 tolerated(0.19) benign(0.006) TCGA-21-1076-01 8 105507409 105507409 C T LRP12 Missense_Mutation p.E537K 0.08 deleterious(0) benign(0.242) TCGA-21-1076-01 8 106814000 106814000 C G ZFPM2 Missense_Mutation p.L564V 0.12 tolerated(0.06) probably_damaging(0.999) TCGA-21-1076-01 8 106814360 106814360 C A ZFPM2 Missense_Mutation p.P684T 0.17 deleterious(0) probably_damaging(0.999) TCGA-21-1076-01 8 113301660 113301660 A G CSMD3 Silent p.L3028L 0.17 TCGA-21-1076-01 8 123964389 123964389 A G ZHX2 Silent p.E213E 0.17 TCGA-21-1076-01 8 12946088 12946088 T - DLC1 Frame_Shift_Del p.V1401* 0.14 TCGA-21-1076-01 8 142437157 142437157 C A PTP4A3 Missense_Mutation p.A106E 0.19 deleterious(0) probably_damaging(0.979) TCGA-21-1076-01 8 2041864 2041864 G C MYOM2 Missense_Mutation p.G691R 0.14 deleterious(0) probably_damaging(1) TCGA-21-1076-01 8 21964958 21964958 G T NUDT18 Silent p.T275T 0.15 TCGA-21-1076-01 8 22102616 22102616 C A POLR3D 5'Flank 0.10 TCGA-21-1076-01 8 39442156 39442156 C A ADAM18 Silent p.L5L 0.09 TCGA-21-1076-01 8 39645623 39645623 C T ADAM2 Missense_Mutation p.D264N 0.09 deleterious(0.01) possibly_damaging(0.872) TCGA-21-1076-01 8 49832952 49832952 G T SNAI2 Missense_Mutation p.P43Q 0.15 deleterious(0.01) probably_damaging(0.941) TCGA-21-1076-01 8 59750744 59750744 C T TOX Missense_Mutation p.D274N 0.21 deleterious(0) probably_damaging(0.995) TCGA-21-1076-01 8 61707581 61707581 G A CHD7 Silent p.K711K 0.09 TCGA-21-1076-01 8 67479191 67479191 C G MYBL1 Missense_Mutation p.E589Q 0.10 deleterious(0.01) probably_damaging(0.992) TCGA-21-1076-01 8 81555279 81555279 A C ZNF704 Missense_Mutation p.V373G 0.11 tolerated(0.39) benign(0.004) TCGA-21-1076-01 9 100057144 100057144 G T CCDC180 5'UTR 0.11 TCGA-21-1076-01 9 100888860 100888860 C T CORO2A Missense_Mutation p.E473K 0.13 deleterious(0.02) possibly_damaging(0.526) TCGA-21-1076-01 9 109690746 109690746 G T ZNF462 Missense_Mutation p.R1518M 0.18 probably_damaging(0.999) TCGA-21-1076-01 9 116836319 116836319 A G AMBP Missense_Mutation p.Y151H 0.09 deleterious(0) probably_damaging(1) TCGA-21-1076-01 9 117827163 117827163 C G TNC Missense_Mutation p.E1084Q 0.15 tolerated(0.09) benign(0.063) TCGA-21-1076-01 9 131191110 131191110 G A CERCAM Missense_Mutation p.E321K 0.13 tolerated(0.06) probably_damaging(0.933) TCGA-21-1076-01 9 137809684 137809684 G A FCN1 Missense_Mutation p.L12F 0.19 tolerated(0.42) benign(0.308) TCGA-21-1076-01 9 138675930 138675930 C A KCNT1 Missense_Mutation p.R968S 0.13 tolerated(0.21) possibly_damaging(0.669) TCGA-21-1076-01 9 18474278 18474278 G T ADAMTSL1 Silent p.L16L 0.10 TCGA-21-1076-01 9 18776954 18776954 C T ADAMTSL1 Silent p.I909I 0.20 TCGA-21-1076-01 9 2718960 2718960 C A KCNV2 Nonsense_Mutation p.C407* 0.28 TCGA-21-1076-01 9 32635600 32635600 C A TAF1L 5'UTR 0.16 TCGA-21-1076-01 9 35712073 35712073 G A TLN1 Missense_Mutation p.P1204S 0.18 deleterious(0) probably_damaging(0.986) TCGA-21-1076-01 9 40716152 40716152 A G FAM74A3 RNA 0.10 TCGA-21-1076-01 9 90499904 90499904 C A SPATA31E1 Missense_Mutation p.P168T 0.15 tolerated(0.27) possibly_damaging(0.534) TCGA-21-1076-01 9 90503319 90503319 G T SPATA31E1 Missense_Mutation p.R1306M 0.18 deleterious(0) possibly_damaging(0.854) TCGA-21-1076-01 9 95274313 95274313 T C ECM2 Missense_Mutation p.I384V 0.15 tolerated(0.05) benign(0.033) TCGA-21-1076-01 9 95797812 95797812 G T FGD3 Missense_Mutation p.A707S 0.17 tolerated(0.4) benign(0.025) TCGA-21-1076-01 X 100611771 100611771 C A BTK Splice_Site p.X450_splice 0.14 TCGA-21-1076-01 X 103432834 103432834 C A FAM199X Missense_Mutation p.S281R 0.09 deleterious_low_confidence(0) probably_damaging(0.933) TCGA-21-1076-01 X 106171781 106171781 G T CLDN2 Missense_Mutation p.C108F 0.06 tolerated(0.21) benign(0.1) TCGA-21-1076-01 X 114238647 114238647 G C IL13RA2 Missense_Mutation p.T380R 0.11 deleterious_low_confidence(0) unknown(0) TCGA-21-1076-01 X 114880810 114880810 G A PLS3 Missense_Mutation p.G489E 0.05 deleterious(0.04) probably_damaging(1) TCGA-21-1076-01 X 114883898 114883898 A G PLS3 3'UTR 0.11 TCGA-21-1076-01 X 117960243 117960243 C A ZCCHC12 Missense_Mutation p.R346S 0.10 tolerated(0.37) benign(0.362) TCGA-21-1076-01 X 118377201 118377201 C A PGRMC1 Missense_Mutation p.A191D 0.07 tolerated(0.6) benign(0.001) TCGA-21-1076-01 X 119053904 119053904 G C AKAP14 Missense_Mutation p.D158H 0.05 deleterious(0) possibly_damaging(0.559) TCGA-21-1076-01 X 12736381 12736381 C G FRMPD4 Missense_Mutation p.Q1146E 0.10 tolerated_low_confidence(0.42) benign(0.011) TCGA-21-1076-01 X 135593630 135593630 G T HTATSF1 Nonsense_Mutation p.E576* 0.15 TCGA-21-1076-01 X 14550468 14550468 A T GLRA2 Missense_Mutation p.D59V 0.08 deleterious(0) probably_damaging(0.984) TCGA-21-1076-01 X 15526551 15526551 T C BMX Silent p.N25N 0.09 TCGA-21-1076-01 X 23398078 23398078 A T PTCHD1 Missense_Mutation p.Q241L 0.09 tolerated(0.31) benign(0.089) TCGA-21-1076-01 X 35820883 35820883 T A MAGEB16 Nonsense_Mutation p.Y190* 0.09 TCGA-21-1076-01 X 37658245 37658245 G T CYBB Missense_Mutation p.V238L 0.11 tolerated(0.37) benign(0.005) TCGA-21-1076-01 X 38024093 38024093 G C SRPX Silent p.P194P 0.12 TCGA-21-1076-01 X 38229091 38229091 G A OTC Missense_Mutation p.E87K 0.12 tolerated(0.11) possibly_damaging(0.871) TCGA-21-1076-01 X 49104173 49104173 C A CCDC22 Missense_Mutation p.R346S 0.22 tolerated(0.83) benign(0.008) TCGA-21-1076-01 X 49955710 49955710 C A AKAP4 Missense_Mutation p.G820C 0.15 deleterious(0) possibly_damaging(0.907) TCGA-21-1076-01 X 54099400 54099400 G T FAM120C 3'UTR 0.17 TCGA-21-1076-01 X 54107770 54107770 C T FAM120C Missense_Mutation p.G988D 0.04 deleterious(0) probably_damaging(1) TCGA-21-1076-01 X 54786271 54786271 C T ITIH6 Nonsense_Mutation p.W331* 0.17 TCGA-21-1076-01 X 54800576 54800576 C G ITIH6 Missense_Mutation p.E281Q 0.20 tolerated(0.52) benign(0.03) TCGA-21-1076-01 X 55033694 55033694 G - APEX2 Frame_Shift_Del p.L464Cfs*14 0.17 TCGA-21-1076-01 X 62974188 62974188 G T ARHGEF9 Missense_Mutation p.T2K 0.14 tolerated_low_confidence(0.09) benign(0.005) TCGA-21-1076-01 X 63548673 63548673 C A MTMR8 Missense_Mutation p.S487I 0.09 tolerated(0.17) benign(0.029) TCGA-21-1076-01 X 64138987 64138987 G T ZC4H2 Missense_Mutation p.Q166K 0.19 tolerated(0.69) benign(0.331) TCGA-21-1076-01 X 67283827 67283827 C T OPHN1 Missense_Mutation p.R676K 0.21 tolerated(0.3) benign(0.003) TCGA-21-1076-01 X 70389467 70389467 G A NLGN3 Silent p.G689G 0.08 TCGA-21-1076-01 X 70524911 70524911 C G ITGB1BP2 Missense_Mutation p.H305D 0.08 tolerated(0.19) benign(0.107) TCGA-21-1076-01 X 71425953 71425953 C A ERCC6L Missense_Mutation p.E888D 0.08 tolerated(0.11) benign(0.035) TCGA-21-1076-01 X 75650843 75650843 G A MAGEE1 Silent p.Q840Q 0.10 TCGA-21-1076-01 X 91132791 91132791 C A PCDH11X Missense_Mutation p.R518S 0.17 tolerated(0.47) possibly_damaging(0.787) TCGA-21-1076-01 X 91133515 91133515 C T PCDH11X Missense_Mutation p.P759L 0.20 deleterious(0) probably_damaging(1) TCGA-21-1076-01 X 96140100 96140100 G T RPA4 3'UTR 0.05 TCGA-21-1076-01 X 96140101 96140101 G T RPA4 3'UTR 0.05 TCGA-21-1077-01 10 107023165 107023165 G T SORCS3 3'UTR 0.16 TCGA-21-1077-01 10 1089329 1089329 T A IDI1 Missense_Mutation p.L106F 0.09 deleterious(0.01) probably_damaging(0.976) TCGA-21-1077-01 10 120488808 120488808 T A CACUL1 Missense_Mutation p.Q199L 0.09 deleterious(0.04) benign(0.009) TCGA-21-1077-01 10 127677168 127677168 G C FANK1 Silent p.L80L 0.17 TCGA-21-1077-01 10 15729992 15729992 A T ITGA8 Missense_Mutation p.F130Y 0.19 tolerated(0.16) probably_damaging(0.998) TCGA-21-1077-01 10 16990574 16990574 A T CUBN Silent p.P1704P 0.16 TCGA-21-1077-01 10 18331824 18331824 G A SLC39A12 3'UTR 0.17 TCGA-21-1077-01 10 24874554 24874554 T C ARHGAP21 Missense_Mutation p.Q1555R 0.10 tolerated(0.36) benign(0.012) TCGA-21-1077-01 10 26359049 26359049 C T MYO3A Silent p.L394L 0.10 TCGA-21-1077-01 10 48414241 48414241 G T GDF2 Missense_Mutation p.S209R 0.15 tolerated(0.22) benign(0.028) TCGA-21-1077-01 10 55626539 55626539 C A PCDH15 Nonsense_Mutation p.G1194* 0.11 TCGA-21-1077-01 10 67680377 67680377 T C CTNNA3 Splice_Site p.X801_splice 0.12 TCGA-21-1077-01 10 68940121 68940121 G T CTNNA3 Missense_Mutation p.A334D 0.14 tolerated(0.06) benign(0.37) TCGA-21-1077-01 10 75294514 75294514 T C USP54 Missense_Mutation p.I387V 0.12 deleterious(0.03) probably_damaging(0.965) TCGA-21-1077-01 10 8115958 8115958 C G GATA3 Missense_Mutation p.P436R 0.11 deleterious(0.01) possibly_damaging(0.905) TCGA-21-1077-01 10 96827166 96827166 T A CYP2C8 Intron 0.21 TCGA-21-1077-01 11 111407415 111407415 C T C11orf88 Intron 0.23 TCGA-21-1077-01 11 111789712 111789712 T A C11orf52 Missense_Mutation p.C6S 0.17 tolerated(0.31) benign(0.281) TCGA-21-1077-01 11 121037356 121037356 G T TECTA Missense_Mutation p.C1818F 0.06 deleterious(0) probably_damaging(0.995) TCGA-21-1077-01 11 124135322 124135322 G T OR8G5 Missense_Mutation p.R200S 0.19 deleterious(0.01) probably_damaging(0.94) TCGA-21-1077-01 11 124179936 124179936 A T OR8D1 Missense_Mutation p.S243T 0.07 deleterious(0) probably_damaging(0.998) TCGA-21-1077-01 11 124624230 124624230 C A ESAM Missense_Mutation p.G246V 0.23 tolerated(0.11) benign(0.197) TCGA-21-1077-01 11 124748308 124748308 G T ROBO3 Missense_Mutation p.G1099V 0.12 tolerated(0.13) benign(0.008) TCGA-21-1077-01 11 128844013 128844013 C T ARHGAP32 Intron 0.08 TCGA-21-1077-01 11 32663553 32663553 C G CCDC73 Missense_Mutation p.E339Q 0.31 deleterious(0) possibly_damaging(0.869) TCGA-21-1077-01 11 46388861 46388861 G C DGKZ Missense_Mutation p.G250A 0.11 deleterious(0) possibly_damaging(0.618) TCGA-21-1077-01 11 47744580 47744580 G A FNBP4 Missense_Mutation p.P918L 0.25 deleterious(0.05) benign(0.164) TCGA-21-1077-01 11 5344690 5344690 G T OR51B2 Missense_Mutation p.L280I 0.34 tolerated(0.06) possibly_damaging(0.764) TCGA-21-1077-01 11 55038407 55038407 C T TRIM48 3'UTR 0.07 TCGA-21-1077-01 11 55579674 55579674 C A OR5L1 Missense_Mutation p.H244Q 0.09 deleterious(0) probably_damaging(0.992) TCGA-21-1077-01 11 55579675 55579675 C A OR5L1 Missense_Mutation p.L245I 0.09 deleterious(0.01) probably_damaging(0.96) TCGA-21-1077-01 11 57144317 57144317 G A PRG3 3'UTR 0.12 TCGA-21-1077-01 11 5758097 5758097 G T OR56B1 Silent p.V117V 0.31 TCGA-21-1077-01 11 59610591 59610591 G T GIF Missense_Mutation p.L94I 0.08 deleterious(0.01) probably_damaging(0.96) TCGA-21-1077-01 11 59610592 59610592 G C GIF Silent p.G93G 0.08 TCGA-21-1077-01 11 63967716 63967716 A G STIP1 Missense_Mutation p.N399S 0.30 deleterious(0) probably_damaging(0.992) TCGA-21-1077-01 11 6453216 6453216 C A HPX Silent p.R289R 0.13 TCGA-21-1077-01 11 66191621 66191621 T C NPAS4 Silent p.L420L 0.13 TCGA-21-1077-01 11 70332960 70332960 C A SHANK2 Silent p.P1147P 0.13 TCGA-21-1077-01 11 78380299 78380299 C A TENM4 Missense_Mutation p.G2364V 0.30 deleterious(0) probably_damaging(1) TCGA-21-1077-01 11 83170850 83170850 C T DLG2 3'UTR 0.10 TCGA-21-1077-01 12 100930750 100930750 G C NR1H4 Missense_Mutation p.E296Q 0.08 tolerated(0.4) benign(0.395) TCGA-21-1077-01 12 104380873 104380873 G A TDG 3'UTR 0.05 TCGA-21-1077-01 12 105567965 105567965 G C APPL2 3'Flank 0.11 TCGA-21-1077-01 12 106480624 106480624 T C NUAK1 Missense_Mutation p.Y134C 0.14 deleterious(0.01) probably_damaging(1) TCGA-21-1077-01 12 113875760 113875760 G T SDSL Missense_Mutation p.R289L 0.12 tolerated(0.27) benign(0.111) TCGA-21-1077-01 12 119866545 119866545 A T CCDC60 Nonsense_Mutation p.K50* 0.20 TCGA-21-1077-01 12 122213649 122213649 C A TMEM120B 3'UTR 0.17 TCGA-21-1077-01 12 3931253 3931253 G A PARP11 Nonsense_Mutation p.Q139* 0.16 TCGA-21-1077-01 12 52979845 52979845 C G KRT72 Missense_Mutation p.G486A 0.17 tolerated_low_confidence(0.11) benign(0.358) TCGA-21-1077-01 12 70964993 70964993 A G PTPRB Silent p.N1061N 0.32 TCGA-21-1077-01 12 7480901 7480901 C T ACSM4 Missense_Mutation p.L559F 0.25 deleterious(0) possibly_damaging(0.896) TCGA-21-1077-01 12 94975677 94975677 T A TMCC3 Missense_Mutation p.Y239F 0.22 tolerated(0.11) possibly_damaging(0.491) TCGA-21-1077-01 12 99638142 99638142 T G ANKS1B Missense_Mutation p.K799N 0.15 deleterious(0.03) benign(0.003) TCGA-21-1077-01 13 112722245 112722245 C A SOX1 Silent p.V91V 0.19 TCGA-21-1077-01 13 114307223 114307223 C A ATP4B Nonsense_Mutation p.E174* 0.15 TCGA-21-1077-01 13 38357251 38357251 G T TRPC4 Missense_Mutation p.L74I 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-21-1077-01 13 41834927 41834927 C A MTRF1 Silent p.L39L 0.16 TCGA-21-1077-01 13 46730577 46730577 G - LCP1 Frame_Shift_Del p.L163Ffs*4 0.18 TCGA-21-1077-01 13 52604681 52604681 G C UTP14C Missense_Mutation p.E581Q 0.19 tolerated(0.11) benign(0.091) TCGA-21-1077-01 13 58208193 58208193 G A PCDH17 Missense_Mutation p.G505S 0.14 tolerated(0.15) probably_damaging(1) TCGA-21-1077-01 13 61986105 61986109 AGTAT - PCDH20 Frame_Shift_Del p.Y708Ffs*4 0.17 TCGA-21-1077-01 13 75915719 75915719 G C TBC1D4 Silent p.L471L 0.12 TCGA-21-1077-01 14 21968795 21968795 G A METTL3 Silent p.D382D 0.14 TCGA-21-1077-01 14 74189513 74189513 T A ELMSAN1 Missense_Mutation p.Y871F 0.32 deleterious(0) probably_damaging(0.996) TCGA-21-1077-01 14 81251423 81251423 T C CEP128 Missense_Mutation p.D676G 0.03 tolerated(0.05) possibly_damaging(0.474) TCGA-21-1077-01 15 20666545 20666545 A T HERC2P3 RNA 0.16 TCGA-21-1077-01 15 22709973 22709973 G A AC116165.1 5'Flank 0.37 TCGA-21-1077-01 15 25444417 25444417 C A SNORD115-14 3'Flank 0.17 TCGA-21-1077-01 15 25444458 25444458 G T SNORD115-14 3'Flank 0.18 TCGA-21-1077-01 15 25444460 25444460 G T SNORD115-14 3'Flank 0.18 TCGA-21-1077-01 15 28502333 28502333 C T HERC2 Missense_Mutation p.M797I 0.09 benign(0.004) TCGA-21-1077-01 15 29346239 29346239 T C APBA2 Missense_Mutation p.L51P 0.27 deleterious_low_confidence(0.04) benign(0.282) TCGA-21-1077-01 15 35222550 35222550 T C AQR Missense_Mutation p.Y308C 0.26 deleterious(0) probably_damaging(0.999) TCGA-21-1077-01 15 37100543 37100543 C T C15orf41 Silent p.V245V 0.07 TCGA-21-1077-01 15 43038444 43038444 T C TTBK2 Missense_Mutation p.Y1095C 0.15 deleterious(0) probably_damaging(0.999) TCGA-21-1077-01 15 44085281 44085281 G T SERF2 Missense_Mutation p.R39M 0.12 deleterious_low_confidence(0) possibly_damaging(0.507) TCGA-21-1077-01 15 49716483 49716483 C A FGF7 5'UTR 0.17 TCGA-21-1077-01 15 53080992 53080992 C A ONECUT1 Missense_Mutation p.A364S 0.26 tolerated(0.09) probably_damaging(0.991) TCGA-21-1077-01 15 77046217 77046217 G A SCAPER Missense_Mutation p.H600Y 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-21-1077-01 15 78927908 78927908 G T CHRNB4 Missense_Mutation p.A26E 0.16 deleterious(0.04) possibly_damaging(0.825) TCGA-21-1077-01 15 79755579 79755579 G A KIAA1024 Silent p.V823V 0.28 TCGA-21-1077-01 15 84611786 84611786 T A ADAMTSL3 Nonsense_Mutation p.C814* 0.07 TCGA-21-1077-01 16 15100389 15100389 A G PDXDC1 Missense_Mutation p.I176M 0.09 deleterious(0) possibly_damaging(0.886) TCGA-21-1077-01 16 1545504 1545504 G T TELO2 Missense_Mutation p.D165Y 0.10 deleterious(0) probably_damaging(0.995) TCGA-21-1077-01 16 1884318 1884318 G A MEIOB Missense_Mutation p.S452L 0.13 deleterious(0) possibly_damaging(0.895) TCGA-21-1077-01 16 20551990 20551990 T A ACSM2B Nonsense_Mutation p.K539* 0.15 TCGA-21-1077-01 16 22328500 22328500 G C POLR3E Missense_Mutation p.D280H 0.14 deleterious(0) probably_damaging(0.954) TCGA-21-1077-01 16 28855622 28855622 C G TUFM Missense_Mutation p.R284P 0.12 deleterious(0) probably_damaging(0.981) TCGA-21-1077-01 16 29755547 29755547 G T C16orf54 3'UTR 0.29 TCGA-21-1077-01 16 31471257 31471257 G T ARMC5 Missense_Mutation p.D138Y 0.13 deleterious(0) possibly_damaging(0.886) TCGA-21-1077-01 16 67694322 67694322 T A ACD Silent p.A20A 0.16 TCGA-21-1077-01 16 72094600 72094600 T - HP Frame_Shift_Del p.K345Sfs*31 0.17 TCGA-21-1077-01 16 74366486 74366486 G A AC009120.6 RNA 0.10 TCGA-21-1077-01 16 75276604 75276604 G T BCAR1 Missense_Mutation p.P179T 0.05 tolerated(0.13) benign(0.017) TCGA-21-1077-01 16 84094378 84094378 C T MBTPS1 Silent p.S871S 0.18 TCGA-21-1077-01 16 87445175 87445175 G C ZCCHC14 Missense_Mutation p.T914S 0.18 tolerated(1) unknown(0) TCGA-21-1077-01 16 88951483 88951483 C T CBFA2T3 Missense_Mutation p.R363Q 0.23 deleterious(0.02) benign(0.023) TCGA-21-1077-01 16 8992280 8992280 G A USP7 Silent p.I885I 0.17 TCGA-21-1077-01 17 30771600 30771600 G T PSMD11 Missense_Mutation p.R20L 0.10 tolerated(0.17) benign(0.051) TCGA-21-1077-01 17 30821850 30821850 G A MYO1D Missense_Mutation p.T983M 0.09 tolerated(0.07) possibly_damaging(0.671) TCGA-21-1077-01 17 34190546 34190546 C T C17orf66 Silent p.E195E 0.15 TCGA-21-1077-01 17 42744135 42744135 G C C17orf104 Missense_Mutation p.D286H 0.09 deleterious(0) probably_damaging(0.989) TCGA-21-1077-01 17 43319802 43319802 C T FMNL1 Silent p.F660F 0.30 TCGA-21-1077-01 17 48797172 48797172 G T LUC7L3 Missense_Mutation p.V27L 0.19 tolerated(0.23) unknown(0) TCGA-21-1077-01 17 4883174 4883174 C A CAMTA2 Missense_Mutation p.R504S 0.34 tolerated_low_confidence(0.12) benign(0.271) TCGA-21-1077-01 17 60754815 60754815 G T MRC2 Missense_Mutation p.A674S 0.14 tolerated(0.77) benign(0.001) TCGA-21-1077-01 17 67008138 67008138 C T ABCA9 Missense_Mutation p.M1042I 0.12 deleterious(0.02) possibly_damaging(0.483) TCGA-21-1077-01 17 70120558 70120558 C T SOX9 3'UTR 0.25 TCGA-21-1077-01 17 73780870 73780870 C G UNK 5'UTR 0.10 TCGA-21-1077-01 17 7579312 7579312 C A TP53 Silent p.T125T 0.32 TCGA-21-1077-01 17 76967746 76967746 G A LGALS3BP Missense_Mutation p.S557F 0.12 tolerated(0.33) probably_damaging(0.959) TCGA-21-1077-01 17 8526239 8526239 T C MYH10 Missense_Mutation p.Y109C 0.32 probably_damaging(0.999) TCGA-21-1077-01 18 12724768 12724768 G C PSMG2 Intron 0.15 TCGA-21-1077-01 18 14179555 14179555 G T ANKRD20A5P RNA 0.29 TCGA-21-1077-01 18 14478225 14478225 C T CXADRP3 RNA 0.18 TCGA-21-1077-01 18 14542978 14542978 C A POTEC Missense_Mutation p.M56I 0.07 deleterious_low_confidence(0.01) benign(0) TCGA-21-1077-01 18 18546931 18546931 G C ROCK1 Missense_Mutation p.S1100C 0.14 deleterious(0.01) benign(0.03) TCGA-21-1077-01 18 2934442 2934442 T C LPIN2 Missense_Mutation p.H392R 0.10 tolerated(0.54) benign(0.002) TCGA-21-1077-01 18 55021655 55021655 C T ST8SIA3 Silent p.L68L 0.14 TCGA-21-1077-01 18 60570353 60570353 A G PHLPP1 Silent p.L867L 0.12 TCGA-21-1077-01 18 67833309 67833309 C A RTTN Nonsense_Mutation p.E640* 0.20 TCGA-21-1077-01 19 10260160 10260160 T A DNMT1 Missense_Mutation p.Y852F 0.34 tolerated(0.1) benign(0.049) TCGA-21-1077-01 19 10602314 10602314 C T KEAP1 Missense_Mutation p.D422N 0.18 deleterious(0.05) possibly_damaging(0.879) TCGA-21-1077-01 19 22271945 22271945 G T ZNF257 Missense_Mutation p.G465C 0.23 deleterious(0) probably_damaging(0.996) TCGA-21-1077-01 19 31767694 31767694 C A TSHZ3 Missense_Mutation p.R1002L 0.20 tolerated(0.07) possibly_damaging(0.66) TCGA-21-1077-01 19 34791501 34791501 G C KIAA0355 Silent p.L41L 0.17 TCGA-21-1077-01 19 42828932 42828932 G T TMEM145 Missense_Mutation p.R482L 0.25 tolerated_low_confidence(0.12) benign(0.009) TCGA-21-1077-01 19 50243100 50243100 C T TSKS Missense_Mutation p.G571E 0.29 deleterious_low_confidence(0.04) probably_damaging(0.949) TCGA-21-1077-01 19 55179245 55179245 G A LILRB4 Splice_Site p.X400_splice 0.19 TCGA-21-1077-01 19 56669923 56669923 G T ZNF444 Missense_Mutation p.G120C 0.29 deleterious(0.01) possibly_damaging(0.819) TCGA-21-1077-01 19 56701294 56701294 C A ZSCAN5B Nonsense_Mutation p.E464* 0.22 TCGA-21-1077-01 19 56701908 56701908 T C ZSCAN5B Missense_Mutation p.K259R 0.17 tolerated(0.1) possibly_damaging(0.556) TCGA-21-1077-01 19 57966664 57966664 A G VN1R1 3'UTR 0.44 TCGA-21-1077-01 19 58601243 58601243 A G ZSCAN18 Missense_Mutation p.L187P 0.22 deleterious(0) probably_damaging(0.999) TCGA-21-1077-01 19 6751351 6751351 C G TRIP10 3'UTR 0.26 TCGA-21-1077-01 1 102312450 102312450 G T OLFM3 Intron 0.26 TCGA-21-1077-01 1 117564311 117564311 A T CD101 Missense_Mutation p.I712F 0.32 tolerated(0.07) possibly_damaging(0.482) TCGA-21-1077-01 1 147230638 147230638 G A GJA5 Nonsense_Mutation p.R237* 0.13 TCGA-21-1077-01 1 155255034 155255034 C T HCN3 Missense_Mutation p.H390Y 0.43 deleterious(0.01) benign(0.143) TCGA-21-1077-01 1 156642423 156642423 C T NES Silent p.L519L 0.50 TCGA-21-1077-01 1 168698420 168698420 G A DPT 5'UTR 0.45 TCGA-21-1077-01 1 175292529 175292529 G A TNR Silent p.L1347L 0.09 TCGA-21-1077-01 1 183857628 183857628 T G RGL1 Missense_Mutation p.N359K 0.08 deleterious(0) probably_damaging(1) TCGA-21-1077-01 1 197411129 197411129 G C CRB1 Intron 0.11 TCGA-21-1077-01 1 214170587 214170587 C T PROX1 Nonsense_Mutation p.R237* 0.36 TCGA-21-1077-01 1 216498814 216498814 C T USH2A Missense_Mutation p.D326N 0.31 possibly_damaging(0.558) TCGA-21-1077-01 1 236898981 236898981 C T ACTN2 Silent p.Y248Y 0.43 TCGA-21-1077-01 1 237777602 237777602 A T RYR2 Missense_Mutation p.Y1725F 0.31 benign(0.001) TCGA-21-1077-01 1 237777665 237777665 A G RYR2 Missense_Mutation p.H1746R 0.07 benign(0.005) TCGA-21-1077-01 1 237870500 237870500 G C RYR2 Missense_Mutation p.G3278R 0.07 possibly_damaging(0.703) TCGA-21-1077-01 1 247615099 247615099 G T OR2B11 Silent p.P62P 0.46 TCGA-21-1077-01 1 247615100 247615100 G T OR2B11 Missense_Mutation p.P62H 0.46 deleterious(0) probably_damaging(0.998) TCGA-21-1077-01 1 249152384 249152384 T C ZNF692 Missense_Mutation p.K47R 0.52 deleterious(0.04) probably_damaging(0.999) TCGA-21-1077-01 1 34663136 34663136 C G C1orf94 Missense_Mutation p.L211V 0.19 deleterious(0.01) probably_damaging(0.913) TCGA-21-1077-01 1 35579681 35579681 G T ZMYM1 Missense_Mutation p.L750F 0.18 tolerated(0.22) benign(0.015) TCGA-21-1077-01 1 39788297 39788297 G A MACF1 Silent p.L1354L 0.13 TCGA-21-1077-01 1 40362800 40362800 T C MYCL 3'UTR 0.42 TCGA-21-1077-01 1 62228771 62228771 A G INADL Missense_Mutation p.M37V 0.32 tolerated(1) benign(0.001) TCGA-21-1077-01 1 76387993 76387993 G T ASB17 Silent p.L151L 0.37 TCGA-21-1077-01 20 13765696 13765696 A G NDUFAF5 5'UTR 0.11 TCGA-21-1077-01 20 17339006 17339007 - A PCSK2 Frame_Shift_Ins p.R109Afs*8 0.23 TCGA-21-1077-01 20 1961086 1961086 G T PDYN Silent p.P216P 0.23 TCGA-21-1077-01 20 33575444 33575444 A C MYH7B Missense_Mutation p.N453T 0.15 possibly_damaging(0.86) TCGA-21-1077-01 20 33872226 33872226 G A EIF6 Missense_Mutation p.T22I 0.25 deleterious(0.01) benign(0.438) TCGA-21-1077-01 20 5753675 5753675 C G C20orf196 Missense_Mutation p.S55C 0.13 deleterious(0.04) probably_damaging(0.986) TCGA-21-1077-01 21 15481335 15481335 T G LIPI Silent p.T475T 0.13 TCGA-21-1077-01 21 30698598 30698598 G T BACH1 Missense_Mutation p.Q151H 0.09 deleterious(0.02) possibly_damaging(0.671) TCGA-21-1077-01 21 45387860 45387860 C T AGPAT3 Missense_Mutation p.T71M 0.16 deleterious(0) possibly_damaging(0.641) TCGA-21-1077-01 22 19707183 19707183 C T SEPT5 Missense_Mutation p.S38L 0.10 deleterious(0) benign(0.242) TCGA-21-1077-01 22 22550615 22550615 T A IGLV6-57 Missense_Mutation p.S98T 0.15 tolerated_low_confidence(0.66) probably_damaging(0.981) TCGA-21-1077-01 22 38373905 38373905 G - SOX10 Frame_Shift_Del p.M223Cfs*63 0.17 TCGA-21-1077-01 22 39883958 39883958 G A MGAT3 Silent p.R202R 0.11 TCGA-21-1077-01 22 50724256 50724256 G A PLXNB2 Silent p.F687F 0.09 TCGA-21-1077-01 2 100210203 100210203 C G AFF3 Missense_Mutation p.E665D 0.14 deleterious(0.01) probably_damaging(0.995) TCGA-21-1077-01 2 128466368 128466368 C T WDR33 Missense_Mutation p.G1222S 0.14 tolerated_low_confidence(0.11) probably_damaging(0.934) TCGA-21-1077-01 2 135012094 135012094 T G MGAT5 Silent p.P40P 0.12 TCGA-21-1077-01 2 136570015 136570015 G A LCT Missense_Mutation p.S740F 0.17 tolerated(0.11) benign(0.182) TCGA-21-1077-01 2 152512352 152512352 C T NEB Silent p.Q2227Q 0.14 TCGA-21-1077-01 2 152527701 152527701 C T NEB Missense_Mutation p.G1448R 0.12 probably_damaging(1) TCGA-21-1077-01 2 15449304 15449304 G T NBAS Silent p.A1550A 0.13 TCGA-21-1077-01 2 155711288 155711288 G T KCNJ3 Missense_Mutation p.W323C 0.08 deleterious(0) probably_damaging(1) TCGA-21-1077-01 2 160303431 160303431 T C BAZ2B Silent p.T186T 0.21 TCGA-21-1077-01 2 166788360 166788360 T A TTC21B Missense_Mutation p.T268S 0.15 tolerated(1) benign(0.002) TCGA-21-1077-01 2 179604796 179604796 T A TTN Silent p.P4388P 0.14 TCGA-21-1077-01 2 17963069 17963069 G T GEN1 Nonsense_Mutation p.E864* 0.09 TCGA-21-1077-01 2 181927648 181927648 G A UBE2E3 3'UTR 0.12 TCGA-21-1077-01 2 185803761 185803761 C T ZNF804A 3'UTR 0.12 TCGA-21-1077-01 2 198358950 198358950 A G HSPD1 Silent p.L211L 0.12 TCGA-21-1077-01 2 211460215 211460215 C T CPS1 Missense_Mutation p.S429F 0.16 deleterious(0) possibly_damaging(0.812) TCGA-21-1077-01 2 228882388 228882388 G A SPHKAP Missense_Mutation p.A1061V 0.15 deleterious(0.01) possibly_damaging(0.716) TCGA-21-1077-01 2 242814310 242814310 C T CXXC11 Silent p.V201V 0.17 TCGA-21-1077-01 2 242814556 242814556 C A CXXC11 Missense_Mutation p.F283L 0.16 tolerated(0.13) probably_damaging(0.968) TCGA-21-1077-01 2 26501540 26501540 G A HADHB Silent p.L167L 0.12 TCGA-21-1077-01 2 32832622 32832622 C T BIRC6 Missense_Mutation p.S4724F 0.12 probably_damaging(1) TCGA-21-1077-01 2 39249797 39249797 T C SOS1 Missense_Mutation p.N591S 0.11 tolerated(0.3) benign(0.013) TCGA-21-1077-01 2 54893114 54893114 A C SPTBN1 Missense_Mutation p.K2241T 0.13 deleterious(0) probably_damaging(0.925) TCGA-21-1077-01 2 669577 669577 C A TMEM18 3'UTR 0.19 TCGA-21-1077-01 2 89266047 89266047 A T IGKV1-6 Missense_Mutation p.S29T 0.12 tolerated(0.12) benign(0.108) TCGA-21-1077-01 3 111686651 111686651 A C PHLDB2 Silent p.R1099R 0.12 TCGA-21-1077-01 3 113346543 113346543 C - SIDT1 Frame_Shift_Del p.P825Lfs*41 0.10 TCGA-21-1077-01 3 140407246 140407246 C A TRIM42 Nonsense_Mutation p.Y574* 0.13 TCGA-21-1077-01 3 140692756 140692756 A C SLC25A36 Missense_Mutation p.E217D 0.20 tolerated(0.38) benign(0.001) TCGA-21-1077-01 3 147128534 147128534 C A ZIC1 Missense_Mutation p.A212D 0.57 deleterious(0.01) probably_damaging(1) TCGA-21-1077-01 3 150264485 150264485 G A EIF2A 5'UTR 0.12 TCGA-21-1077-01 3 164907944 164907944 C T SLITRK3 Missense_Mutation p.M225I 0.05 deleterious(0.02) probably_damaging(0.989) TCGA-21-1077-01 3 179472565 179472565 G T USP13 Missense_Mutation p.R615L 0.04 deleterious(0) probably_damaging(0.983) TCGA-21-1077-01 3 183368735 183368735 T C KLHL24 Silent p.D197D 0.04 TCGA-21-1077-01 3 185316310 185316310 C T SENP2 Missense_Mutation p.R90W 0.05 deleterious(0.03) benign(0.002) TCGA-21-1077-01 3 185434530 185434530 C T C3orf65 Silent p.V121V 0.05 TCGA-21-1077-01 3 188933167 188933167 G A TPRG1 Silent p.L99L 0.46 TCGA-21-1077-01 3 192516720 192516720 G C MB21D2 Missense_Mutation p.Q311E 0.09 tolerated(0.19) possibly_damaging(0.569) TCGA-21-1077-01 3 193183889 193183889 G A ATP13A4 Silent p.I399I 0.14 TCGA-21-1077-01 3 195480067 195480067 G T MUC4 Silent p.S5121S 0.06 TCGA-21-1077-01 3 195701346 195701346 C T SDHAP1 RNA 0.06 TCGA-21-1077-01 3 36896951 36896951 A C TRANK1 Missense_Mutation p.L1377R 0.29 deleterious(0) probably_damaging(0.992) TCGA-21-1077-01 3 36898598 36898598 G A TRANK1 Missense_Mutation p.T828I 0.16 tolerated(0.11) possibly_damaging(0.542) TCGA-21-1077-01 3 41280628 41280628 C G CTNNB1 Missense_Mutation p.P714R 0.27 tolerated_low_confidence(0.08) benign(0.187) TCGA-21-1077-01 3 42827622 42827622 C T HIGD1A Missense_Mutation p.G58R 0.10 tolerated(0.2) possibly_damaging(0.654) TCGA-21-1077-01 3 48612109 48612109 C T COL7A1 Splice_Site p.X2131_splice 0.32 TCGA-21-1077-01 3 74413659 74413659 T C CNTN3 Missense_Mutation p.K391R 0.11 tolerated(0.1) probably_damaging(0.995) TCGA-21-1077-01 3 74418477 74418477 G A CNTN3 Missense_Mutation p.S270F 0.06 deleterious(0.03) possibly_damaging(0.776) TCGA-21-1077-01 3 89259060 89259060 C - EPHA3 Frame_Shift_Del p.Q69Rfs*14 0.11 TCGA-21-1077-01 4 155461791 155461791 C A PLRG1 Silent p.P298P 0.23 TCGA-21-1077-01 4 36075362 36075362 C G ARAP2 Silent p.L1564L 0.17 TCGA-21-1077-01 4 517609 517609 G A PIGG Nonsense_Mutation p.W659* 0.26 TCGA-21-1077-01 4 69533769 69533770 - T UGT2B15 Frame_Shift_Ins p.P288Tfs*4 0.19 TCGA-21-1077-01 5 101834355 101834355 C T SLCO6A1 Missense_Mutation p.R65Q 0.15 tolerated(0.69) benign(0.011) TCGA-21-1077-01 5 102433116 102433117 - A GIN1 Frame_Shift_Ins p.E304* 0.15 TCGA-21-1077-01 5 10411627 10411627 G T MARCH6 Missense_Mutation p.R625L 0.21 deleterious(0) probably_damaging(0.959) TCGA-21-1077-01 5 131034692 131034692 T C FNIP1 Missense_Mutation p.M374V 0.26 tolerated(0.05) probably_damaging(0.968) TCGA-21-1077-01 5 140215896 140215896 C A PCDHA7 Missense_Mutation p.P643Q 0.06 deleterious_low_confidence(0.03) possibly_damaging(0.699) TCGA-21-1077-01 5 140589881 140589881 C A PCDHB12 Missense_Mutation p.L468M 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.633) TCGA-21-1077-01 5 140594235 140594235 G T PCDHB13 Silent p.R180R 0.19 TCGA-21-1077-01 5 140740288 140740288 C G PCDHGB2 Missense_Mutation p.L196V 0.07 deleterious(0.04) possibly_damaging(0.576) TCGA-21-1077-01 5 140951005 140951005 T A DIAPH1 Splice_Site p.X825_splice 0.22 TCGA-21-1077-01 5 149216209 149216209 G A PPARGC1B Missense_Mutation p.E731K 0.18 tolerated(0.09) benign(0.049) TCGA-21-1077-01 5 15937245 15937245 C T FBXL7 Missense_Mutation p.R476C 0.30 deleterious(0) possibly_damaging(0.719) TCGA-21-1077-01 5 169535196 169535196 G T FOXI1 Missense_Mutation p.V240L 0.12 tolerated(0.31) benign(0.009) TCGA-21-1077-01 5 175388288 175388288 C A THOC3 Missense_Mutation p.R260L 0.11 deleterious(0) possibly_damaging(0.716) TCGA-21-1077-01 5 176026691 176026691 G C GPRIN1 Missense_Mutation p.Q49E 0.21 deleterious(0.02) benign(0.288) TCGA-21-1077-01 5 176939832 176939832 C A DDX41 Nonsense_Mutation p.E450* 0.26 TCGA-21-1077-01 5 178413425 178413425 G T GRM6 Nonsense_Mutation p.Y610* 0.20 TCGA-21-1077-01 5 33984399 33984399 G C SLC45A2 Missense_Mutation p.S97C 0.13 tolerated(0.11) benign(0.032) TCGA-21-1077-01 5 42566037 42566037 G A GHR Missense_Mutation p.G21R 0.11 deleterious_low_confidence(0.01) benign(0.039) TCGA-21-1077-01 5 43446438 43446438 G A C5orf28 Silent p.F178F 0.28 TCGA-21-1077-01 5 63257016 63257016 G A HTR1A Silent p.T177T 0.16 TCGA-21-1077-01 5 64484044 64484044 C T ADAMTS6 Nonsense_Mutation p.W903* 0.13 TCGA-21-1077-01 5 79033202 79033202 C T CMYA5 Missense_Mutation p.H2872Y 0.05 benign(0.081) TCGA-21-1077-01 6 109274546 109274546 C A ARMC2 Missense_Mutation p.T636N 0.33 tolerated(0.2) benign(0.116) TCGA-21-1077-01 6 110538960 110538960 C T CDC40 Silent p.L348L 0.21 TCGA-21-1077-01 6 111498481 111498481 G A SLC16A10 Silent p.Q185Q 0.16 TCGA-21-1077-01 6 111498482 111498482 C A SLC16A10 Missense_Mutation p.P186T 0.16 deleterious(0) probably_damaging(1) TCGA-21-1077-01 6 139563943 139563943 C T TXLNB Missense_Mutation p.G592D 0.33 tolerated_low_confidence(0.11) benign(0.045) TCGA-21-1077-01 6 144780310 144780310 C A UTRN Silent p.R843R 0.18 TCGA-21-1077-01 6 152529337 152529337 C G SYNE1 Missense_Mutation p.E7532Q 0.09 probably_damaging(0.94) TCGA-21-1077-01 6 155579203 155579203 C T TFB1M Missense_Mutation p.E270K 0.16 tolerated(0.46) benign(0.038) TCGA-21-1077-01 6 27440087 27440087 C T ZNF184 5'UTR 0.08 TCGA-21-1077-01 6 30876830 30876830 C A GTF2H4 Nonsense_Mutation p.S6* 0.13 TCGA-21-1077-01 6 36927041 36927041 G C PI16 Missense_Mutation p.D98H 0.19 deleterious(0) probably_damaging(0.999) TCGA-21-1077-01 6 38863930 38863930 C T DNAH8 Missense_Mutation p.R2740C 0.17 benign(0.032) TCGA-21-1077-01 6 40399554 40399554 G A LRFN2 Silent p.T433T 0.17 TCGA-21-1077-01 6 46656835 46656835 G T TDRD6 Nonsense_Mutation p.G324* 0.27 TCGA-21-1077-01 6 49578736 49578736 C T RHAG Splice_Site p.X356_splice 0.22 TCGA-21-1077-01 6 55216362 55216362 C A GFRAL Missense_Mutation p.Q228K 0.15 tolerated(0.1) benign(0.1) TCGA-21-1077-01 6 55929373 55929373 T C COL21A1 Intron 0.18 TCGA-21-1077-01 6 6167791 6167791 G C F13A1 Missense_Mutation p.A603G 0.17 tolerated(0.08) benign(0.008) TCGA-21-1077-01 6 84333061 84333061 G T SNAP91 Missense_Mutation p.Q256K 0.21 deleterious(0.01) unknown(0) TCGA-21-1077-01 7 103180703 103180703 G A RELN Missense_Mutation p.L2291F 0.28 tolerated(0.33) possibly_damaging(0.732) TCGA-21-1077-01 7 103243798 103243798 G C RELN Missense_Mutation p.Q1096E 0.13 tolerated(0.42) benign(0.002) TCGA-21-1077-01 7 103301968 103301968 A C RELN Missense_Mutation p.D432E 0.21 tolerated(0.42) benign(0.012) TCGA-21-1077-01 7 112724851 112724851 C G GPR85 5'UTR 0.19 TCGA-21-1077-01 7 117874896 117874896 G T ANKRD7 Nonsense_Mutation p.E146* 0.22 TCGA-21-1077-01 7 144380018 144380018 C G TPK1 Missense_Mutation p.E57Q 0.13 tolerated(0.4) benign(0.049) TCGA-21-1077-01 7 149476125 149476125 A G SSPO RNA 0.30 TCGA-21-1077-01 7 20441445 20441445 T G ITGB8 Missense_Mutation p.I461M 0.08 deleterious(0) possibly_damaging(0.882) TCGA-21-1077-01 7 31864549 31864549 G T PDE1C Silent p.T506T 0.31 TCGA-21-1077-01 7 94953837 94953837 G C PON1 5'UTR 0.14 TCGA-21-1077-01 8 121823898 121823898 G T SNTB1 Silent p.T62T 0.18 TCGA-21-1077-01 8 139164667 139164667 G C FAM135B Missense_Mutation p.S684C 0.14 deleterious(0) probably_damaging(0.999) TCGA-21-1077-01 8 140630669 140630669 G A KCNK9 Silent p.S319S 0.31 TCGA-21-1077-01 8 143957739 143957739 G A CYP11B1 Missense_Mutation p.A291V 0.49 deleterious(0.02) probably_damaging(0.909) TCGA-21-1077-01 8 145727009 145727009 G A PPP1R16A Missense_Mutation p.S437N 0.31 tolerated(0.16) benign(0.006) TCGA-21-1077-01 8 15998313 15998313 G A MSR1 Intron 0.39 TCGA-21-1077-01 8 42407759 42407759 G A SMIM19 3'UTR 0.25 TCGA-21-1077-01 8 52323844 52323844 C T PXDNL Silent p.V676V 0.50 TCGA-21-1077-01 9 100124529 100124529 G C CCDC180 Missense_Mutation p.Q1280H 0.15 tolerated(0.16) benign(0.001) TCGA-21-1077-01 9 102595930 102595930 C G NR4A3 Intron 0.12 TCGA-21-1077-01 9 104390665 104390665 C A GRIN3A Nonsense_Mutation p.G791* 0.07 TCGA-21-1077-01 9 109746651 109746651 C A ZNF462 Missense_Mutation p.H2339Q 0.09 benign(0.039) TCGA-21-1077-01 9 125921449 125921449 C T STRBP Missense_Mutation p.C254Y 0.19 deleterious(0.05) probably_damaging(0.993) TCGA-21-1077-01 9 130829300 130829300 C G NAIF1 Missense_Mutation p.K27N 0.19 tolerated(0.96) benign(0.042) TCGA-21-1077-01 9 131733096 131733096 G T NUP188 Missense_Mutation p.L324F 0.17 deleterious(0) probably_damaging(1) TCGA-21-1077-01 9 132571783 132571783 T C TOR1B Missense_Mutation p.M311T 0.17 deleterious(0) possibly_damaging(0.449) TCGA-21-1077-01 9 32526089 32526089 G T DDX58 Missense_Mutation p.L26M 0.15 deleterious(0.02) benign(0.175) TCGA-21-1077-01 9 34997080 34997080 C - DNAJB5 Frame_Shift_Del p.C406Afs*10 0.14 TCGA-21-1077-01 9 84606183 84606183 G T SPATA31D1 Missense_Mutation p.L266F 0.10 tolerated(0.07) benign(0.082) TCGA-21-1077-01 9 97333768 97333768 G C FBP2 Silent p.G181G 0.15 TCGA-21-1077-01 9 99699495 99699495 G T NUTM2G Nonsense_Mutation p.E378* 0.17 TCGA-21-1077-01 9 99699561 99699561 G A NUTM2G Missense_Mutation p.E400K 0.18 tolerated(0.11) possibly_damaging(0.583) TCGA-21-1077-01 X 117960025 117960025 C - ZCCHC12 Frame_Shift_Del p.D274Mfs*4 0.43 TCGA-21-1077-01 X 22065257 22065257 C G PHEX Missense_Mutation p.P93A 0.30 tolerated(0.1) possibly_damaging(0.715) TCGA-21-1077-01 X 23019068 23019068 G T DDX53 Silent p.G298G 0.40 TCGA-21-1077-01 X 55650442 55650442 G A FOXR2 Missense_Mutation p.G100R 0.43 tolerated(0.12) benign(0.001) TCGA-21-1077-01 X 64722205 64722205 C A ZC3H12B Missense_Mutation p.H543N 0.47 tolerated(0.31) benign(0.027) TCGA-21-1077-01 Y 2829519 2829519 A T ZFY Missense_Mutation p.S156C 0.30 tolerated(0.19) possibly_damaging(0.705) TCGA-21-1078-01 10 49661458 49661458 C T ARHGAP22 Missense_Mutation p.E309K 0.37 deleterious(0.01) benign(0.263) TCGA-21-1078-01 10 53458869 53458869 C T CSTF2T Missense_Mutation p.M147I 0.40 deleterious(0.03) possibly_damaging(0.785) TCGA-21-1078-01 10 7409620 7409620 G A SFMBT2 Missense_Mutation p.P143S 0.04 deleterious(0) probably_damaging(0.998) TCGA-21-1078-01 11 106849404 106849404 G C GUCY1A2 Missense_Mutation p.S143C 0.47 tolerated(0.07) possibly_damaging(0.556) TCGA-21-1078-01 11 44289129 44289129 C T ALX4 Missense_Mutation p.R274H 0.45 deleterious(0) probably_damaging(0.98) TCGA-21-1078-01 11 64053946 64053946 G A GPR137 Intron 0.50 TCGA-21-1078-01 11 70171633 70171633 G C PPFIA1 Missense_Mutation p.E187Q 0.44 deleterious(0.05) benign(0.27) TCGA-21-1078-01 11 70172894 70172894 G T PPFIA1 Missense_Mutation p.M300I 0.40 tolerated(0.14) benign(0.007) TCGA-21-1078-01 11 74914294 74914294 G A SLCO2B1 Intron 0.44 TCGA-21-1078-01 11 7960244 7960244 G A OR10A3 Missense_Mutation p.S275L 0.50 deleterious(0) probably_damaging(0.973) TCGA-21-1078-01 12 1017901 1017901 C T WNK1 Silent p.I2364I 0.37 TCGA-21-1078-01 12 10772780 10772780 C G STYK1 Missense_Mutation p.R411T 0.44 tolerated(0.44) benign(0.001) TCGA-21-1078-01 12 119909929 119909929 G A CCDC60 Missense_Mutation p.E101K 0.42 tolerated(1) benign(0) TCGA-21-1078-01 12 133324434 133324434 T G ANKLE2 Missense_Mutation p.N405T 0.42 deleterious(0) probably_damaging(0.998) TCGA-21-1078-01 12 25378645 25378645 C G KRAS Missense_Mutation p.C118S 0.48 tolerated(0.1) benign(0.072) TCGA-21-1078-01 12 49427255 49427255 G A KMT2D Nonsense_Mutation p.Q3745* 0.44 TCGA-21-1078-01 12 49951431 49951431 C T KCNH3 Nonsense_Mutation p.Q983* 0.38 TCGA-21-1078-01 12 76741254 76741254 C G BBS10 Missense_Mutation p.E171Q 0.47 deleterious(0.04) benign(0.016) TCGA-21-1078-01 12 8376647 8376647 C T FAM90A1 Silent p.L96L 0.48 TCGA-21-1078-01 13 25049640 25049640 G A PARP4 Silent p.I628I 0.38 TCGA-21-1078-01 13 32944665 32944665 G A BRCA2 Missense_Mutation p.V2820I 0.40 tolerated(0.56) benign(0.108) TCGA-21-1078-01 13 33590885 33590885 G A KL Missense_Mutation p.D103N 0.41 tolerated(0.71) benign(0.054) TCGA-21-1078-01 14 102792953 102792953 C T ZNF839 Missense_Mutation p.S307F 0.48 tolerated(0.2) possibly_damaging(0.843) TCGA-21-1078-01 14 105409053 105409053 C G AHNAK2 Silent p.L4245L 0.46 TCGA-21-1078-01 14 105409191 105409191 C T AHNAK2 Silent p.V4199V 0.39 TCGA-21-1078-01 14 75287820 75287820 G C YLPM1 Missense_Mutation p.E2031Q 0.56 benign(0.425) TCGA-21-1078-01 15 73994714 73994714 C G CD276 Missense_Mutation p.I66M 0.53 deleterious(0.03) benign(0.19) TCGA-21-1078-01 16 22545345 22545345 C T NPIPB5 Silent p.L347L 0.19 TCGA-21-1078-01 16 3788610 3788610 G - CREBBP Frame_Shift_Del p.V1449Ffs*10 0.24 TCGA-21-1078-01 16 67858617 67858617 G C TSNAXIP1 Missense_Mutation p.E151Q 0.39 deleterious(0) probably_damaging(0.994) TCGA-21-1078-01 17 16120682 16120682 G C PIGL Missense_Mutation p.A48P 0.41 deleterious(0) probably_damaging(1) TCGA-21-1078-01 17 33434099 33434099 G C RAD51D Missense_Mutation p.Q150E 0.45 deleterious(0) probably_damaging(0.999) TCGA-21-1078-01 17 34305249 34305249 C T CCL16 Missense_Mutation p.E43K 0.42 tolerated(0.13) possibly_damaging(0.78) TCGA-21-1078-01 17 60005334 60005334 G A INTS2 5'UTR 0.44 TCGA-21-1078-01 17 6483097 6483097 G A KIAA0753 Silent p.F958F 0.51 TCGA-21-1078-01 17 7534110 7534110 G C SHBG Missense_Mutation p.E106Q 0.53 deleterious(0) probably_damaging(0.998) TCGA-21-1078-01 18 2688481 2688483 TCT - SMCHD1 In_Frame_Del p.F245del 0.46 TCGA-21-1078-01 18 74620297 74620297 C G ZNF236 Silent p.L771L 0.35 TCGA-21-1078-01 19 1470100 1470100 C T APC2 Missense_Mutation p.S2267L 0.33 benign(0.23) TCGA-21-1078-01 19 3163135 3163135 G A GNA15 3'UTR 0.60 TCGA-21-1078-01 19 4839538 4839538 G A PLIN3 Missense_Mutation p.S324F 0.67 deleterious(0.02) benign(0.114) TCGA-21-1078-01 19 9069097 9069097 C A MUC16 Missense_Mutation p.D6117Y 0.37 unknown(0) TCGA-21-1078-01 1 103491792 103491792 C G COL11A1 Missense_Mutation p.E293Q 0.31 benign(0.341) TCGA-21-1078-01 1 12251959 12251959 G C TNFRSF1B Missense_Mutation p.G146R 0.44 deleterious(0) probably_damaging(1) TCGA-21-1078-01 1 155764901 155764901 C A GON4L Nonsense_Mutation p.E563* 0.44 TCGA-21-1078-01 1 158597502 158597502 C T SPTA1 Missense_Mutation p.M1859I 0.10 deleterious(0) benign(0.143) TCGA-21-1078-01 1 159002320 159002320 A T IFI16 Nonsense_Mutation p.K390* 0.58 TCGA-21-1078-01 1 161069480 161069480 G C KLHDC9 Silent p.R260R 0.42 TCGA-21-1078-01 1 183514079 183514079 A T SMG7 Missense_Mutation p.T622S 0.43 tolerated_low_confidence(0.07) benign(0.075) TCGA-21-1078-01 1 206619562 206619562 C T SRGAP2 Silent p.I586I 0.43 TCGA-21-1078-01 1 248343574 248343574 G A OR2M2 Missense_Mutation p.G96D 0.43 deleterious(0.03) benign(0.167) TCGA-21-1078-01 1 27056345 27056346 - AC ARID1A Frame_Shift_Ins p.Q449Hfs*171 0.42 TCGA-21-1078-01 1 39341781 39341781 T C GJA9 5'UTR 0.03 TCGA-21-1078-01 1 45484275 45484275 C G ZSWIM5 Missense_Mutation p.E1137Q 0.42 deleterious(0.02) unknown(0) TCGA-21-1078-01 1 79093672 79093672 G C IFI44L Missense_Mutation p.L24F 0.46 tolerated(0.56) probably_damaging(0.999) TCGA-21-1078-01 20 472947 472947 C T CSNK2A1 Missense_Mutation p.R191Q 0.08 deleterious(0) probably_damaging(0.969) TCGA-21-1078-01 21 47666692 47666692 C T MCM3AP Missense_Mutation p.E1467K 0.39 deleterious(0.05) benign(0.115) TCGA-21-1078-01 2 191064968 191064968 C G C2orf88 3'UTR 0.40 TCGA-21-1078-01 2 204599718 204599718 C G CD28 3'UTR 0.53 TCGA-21-1078-01 2 84804425 84804425 C T DNAH6 Missense_Mutation p.H657Y 0.44 tolerated(1) benign(0.424) TCGA-21-1078-01 3 12653511 12653511 G C RAF1 Silent p.L86L 0.45 TCGA-21-1078-01 3 148777580 148777580 C A HLTF Missense_Mutation p.V434F 0.36 tolerated(0.36) benign(0.018) TCGA-21-1078-01 3 155560270 155560270 A G SLC33A1 Missense_Mutation p.I305T 0.49 deleterious(0.04) benign(0.056) TCGA-21-1078-01 3 164767660 164767660 T C SI Missense_Mutation p.M506V 0.41 deleterious(0) possibly_damaging(0.6) TCGA-21-1078-01 3 178936070 178936070 G A PIK3CA Missense_Mutation p.D538N 0.45 deleterious(0) probably_damaging(1) TCGA-21-1078-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.44 deleterious(0.04) probably_damaging(0.96) TCGA-21-1078-01 3 193039551 193039551 G A ATP13A5 Nonsense_Mutation p.Q612* 0.46 TCGA-21-1078-01 3 47884701 47884701 G C DHX30 Missense_Mutation p.E299Q 0.44 tolerated(0.23) benign(0.424) TCGA-21-1078-01 3 47958284 47958284 C T MAP4 Missense_Mutation p.A345T 0.44 deleterious(0.01) benign(0.41) TCGA-21-1078-01 3 52440372 52440372 C T BAP1 Missense_Mutation p.R227H 0.50 deleterious(0.03) probably_damaging(0.977) TCGA-21-1078-01 3 52441280 52441300 TCCGCACTGCACTAAGGCCAT - BAP1 In_Frame_Del p.N157_R163del 0.41 TCGA-21-1078-01 4 125593004 125593004 T C ANKRD50 Missense_Mutation p.I476M 0.49 deleterious(0.01) benign(0.078) TCGA-21-1078-01 4 153249384 153249384 C T FBXW7 Missense_Mutation p.R465H 0.42 deleterious(0) probably_damaging(0.998) TCGA-21-1078-01 4 1803564 1803564 C T FGFR3 Missense_Mutation p.R248C 0.74 deleterious(0) probably_damaging(0.977) TCGA-21-1078-01 4 40122763 40122763 T C N4BP2 Missense_Mutation p.V1011A 0.50 tolerated(0.71) benign(0.007) TCGA-21-1078-01 5 140221266 140221266 C T PCDHA8 Silent p.D120D 0.03 TCGA-21-1078-01 6 108365809 108365809 C T OSTM1 3'UTR 0.38 TCGA-21-1078-01 6 132693969 132693969 G A MOXD1 Silent p.D193D 0.43 TCGA-21-1078-01 6 155577835 155577835 C T TIAM2 Silent p.I1562I 0.44 TCGA-21-1078-01 6 169634881 169634881 G T THBS2 Nonsense_Mutation p.C533* 0.37 TCGA-21-1078-01 6 32260716 32260716 C G C6orf10 3'UTR 0.47 TCGA-21-1078-01 6 41304003 41304003 G C NCR2 Missense_Mutation p.W77C 0.50 deleterious(0) benign(0.032) TCGA-21-1078-01 6 43189468 43189468 C G CUL9 Silent p.L2266L 0.40 TCGA-21-1078-01 6 83863335 83863335 C G DOPEY1 Missense_Mutation p.H2079D 0.35 deleterious(0) probably_damaging(0.997) TCGA-21-1078-01 7 151875059 151875060 - T KMT2C Frame_Shift_Ins p.S2494Efs*31 0.38 TCGA-21-1078-01 7 75689711 75689711 C A MDH2 Silent p.I150I 0.37 TCGA-21-1078-01 7 92129085 92129085 C A PEX1 Missense_Mutation p.G884V 0.42 deleterious(0) probably_damaging(0.998) TCGA-21-1078-01 7 99752524 99752524 C G C7orf43 3'UTR 0.33 TCGA-21-1078-01 8 145059449 145059449 G A PARP10 Silent p.L241L 0.46 TCGA-21-1078-01 8 19362750 19362750 G A CSGALNACT1 Missense_Mutation p.P199L 0.43 tolerated(0.26) benign(0.005) TCGA-21-1078-01 8 68968100 68968100 A G PREX2 Missense_Mutation p.M377V 0.37 tolerated(0.12) possibly_damaging(0.824) TCGA-21-1078-01 9 114176211 114176211 C T KIAA0368 Silent p.L859L 0.30 TCGA-21-1078-01 9 116356725 116356725 G C RGS3 Missense_Mutation p.K1032N 0.47 deleterious(0) probably_damaging(0.973) TCGA-21-1078-01 9 20862671 20862673 CTC T FOCAD Frame_Shift_Del p.S672Ffs*11 0.44 TCGA-21-1078-01 9 20862683 20862683 C A FOCAD Missense_Mutation p.S676Y 0.89 deleterious(0.04) possibly_damaging(0.898) TCGA-21-1078-01 9 20862693 20862693 C A FOCAD Silent p.V679V 0.88 TCGA-21-1078-01 9 42368547 42368547 G A ANKRD20A2 Missense_Mutation p.D45N 0.18 tolerated(0.99) possibly_damaging(0.831) TCGA-21-1078-01 9 79002231 79002231 C T RFK 3'UTR 0.43 TCGA-21-1078-01 9 99083441 99083441 G A SLC35D2 3'UTR 0.56 TCGA-21-1078-01 X 100494030 100494030 C A DRP2 Missense_Mutation p.Q167K 0.91 tolerated(0.07) possibly_damaging(0.78) TCGA-21-1078-01 X 123200024 123200024 G A STAG2 Splice_Site p.X699_splice 0.87 TCGA-21-1078-01 X 13792652 13792652 C G GPM6B Intron 0.93 TCGA-21-1078-01 X 153152490 153152490 G A LCA10 Missense_Mutation p.A293T 1.00 deleterious_low_confidence(0) possibly_damaging(0.691) TCGA-21-1078-01 X 53581603 53581613 GAGCTGGGGAT CAGGGGGGGGG HUWE1 Missense_Mutation p.LSPAP2825FPPPA 0.08 TCGA-21-1081-01 10 120796677 120796677 G A EIF3A Silent p.D1291D 0.17 TCGA-21-1081-01 10 124697585 124697585 C A C10orf88 Nonsense_Mutation p.G247* 0.46 TCGA-21-1081-01 10 13330441 13330441 G C PHYH Missense_Mutation p.I199M 0.49 deleterious(0) possibly_damaging(0.872) TCGA-21-1081-01 10 135053877 135053877 A G VENTX 3'UTR 0.48 TCGA-21-1081-01 10 69935098 69935098 G A MYPN Silent p.A861A 0.47 TCGA-21-1081-01 10 97969612 97969612 G C BLNK Missense_Mutation p.S243C 0.20 tolerated(0.13) benign(0.033) TCGA-21-1081-01 11 121008472 121008472 G T TECTA Missense_Mutation p.R1095L 0.39 tolerated(0.24) possibly_damaging(0.785) TCGA-21-1081-01 11 125267941 125267941 A G PKNOX2 Missense_Mutation p.I191V 0.56 tolerated(0.27) benign(0.001) TCGA-21-1081-01 11 233040 233040 G T SIRT3 Missense_Mutation p.H217N 0.54 tolerated(0.11) benign(0.152) TCGA-21-1081-01 11 4389372 4389372 G T OR52B4 Missense_Mutation p.L52I 0.44 tolerated(0.35) benign(0.02) TCGA-21-1081-01 11 55371668 55371668 A G OR4C11 Missense_Mutation p.L61P 0.48 deleterious(0.01) benign(0.417) TCGA-21-1081-01 11 55432931 55432931 A G OR4C6 Missense_Mutation p.T97A 0.20 tolerated_low_confidence(0.26) benign(0.008) TCGA-21-1081-01 11 57080646 57080646 C A TNKS1BP1 Missense_Mutation p.A506S 0.19 tolerated(0.33) probably_damaging(0.997) TCGA-21-1081-01 11 57080648 57080648 T A TNKS1BP1 Missense_Mutation p.E505V 0.21 deleterious(0) probably_damaging(0.988) TCGA-21-1081-01 11 58343329 58343329 T C LPXN Intron 0.12 TCGA-21-1081-01 11 62595044 62595044 G A STX5 Silent p.T95T 0.47 TCGA-21-1081-01 11 73105632 73105634 AGA - RELT In_Frame_Del p.K302del 0.38 TCGA-21-1081-01 12 109894110 109894110 T C KCTD10 Missense_Mutation p.D179G 0.22 deleterious(0) probably_damaging(0.999) TCGA-21-1081-01 12 13241724 13241724 G A GSG1 Intron 0.44 TCGA-21-1081-01 12 22659657 22659657 T A C2CD5 Missense_Mutation p.I379F 0.35 deleterious(0) probably_damaging(0.991) TCGA-21-1081-01 12 22676435 22676435 G A C2CD5 Missense_Mutation p.A242V 0.17 deleterious(0.03) benign(0.05) TCGA-21-1081-01 12 4409186 4409186 T G CCND2 3'UTR 0.17 TCGA-21-1081-01 12 441100 441100 T C KDM5A Missense_Mutation p.Y553C 0.36 deleterious(0.02) benign(0.311) TCGA-21-1081-01 12 55421350 55421350 G T NEUROD4 3'UTR 0.55 TCGA-21-1081-01 12 55421351 55421351 G T NEUROD4 3'UTR 0.54 TCGA-21-1081-01 12 57437912 57437912 G C MYO1A Missense_Mutation p.A241G 0.51 deleterious(0.04) possibly_damaging(0.555) TCGA-21-1081-01 12 78510561 78510561 C T NAV3 Silent p.D882D 0.45 TCGA-21-1081-01 12 86198647 86198647 T C RASSF9 Missense_Mutation p.R381G 0.48 tolerated(0.43) benign(0) TCGA-21-1081-01 12 960894 960894 T C WNK1 Intron 0.13 TCGA-21-1081-01 13 113526056 113526056 G A ATP11A Missense_Mutation p.G1000E 0.05 tolerated(0.05) possibly_damaging(0.696) TCGA-21-1081-01 13 32841387 32841387 C A FRY Missense_Mutation p.A2676D 0.19 tolerated(0.1) benign(0.128) TCGA-21-1081-01 13 52535998 52535998 A G ATP7B Silent p.L641L 0.58 TCGA-21-1081-01 14 102910044 102910044 C T TECPR2 Missense_Mutation p.S938F 0.40 deleterious(0.04) possibly_damaging(0.62) TCGA-21-1081-01 14 24629822 24629822 C G RNF31 3'UTR 0.13 TCGA-21-1081-01 14 50117145 50117145 G C POLE2 Missense_Mutation p.I445M 0.27 tolerated(0.05) benign(0.142) TCGA-21-1081-01 14 64465690 64465690 A G SYNE2 Missense_Mutation p.T1138A 0.49 benign(0.093) TCGA-21-1081-01 15 100271607 100271607 T A LYSMD4 Missense_Mutation p.N72I 0.51 tolerated(0.14) benign(0.102) TCGA-21-1081-01 15 43826825 43826825 C A PPIP5K1 3'UTR 0.21 TCGA-21-1081-01 15 48527109 48527109 A T SLC12A1 Missense_Mutation p.T375S 0.53 deleterious(0.04) possibly_damaging(0.497) TCGA-21-1081-01 15 70344823 70344823 G T TLE3 Missense_Mutation p.A675D 0.54 deleterious(0) probably_damaging(0.999) TCGA-21-1081-01 15 79339153 79339153 C G RASGRF1 Silent p.R271R 0.55 TCGA-21-1081-01 16 16146661 16146661 C T ABCC1 Silent p.T487T 0.24 TCGA-21-1081-01 16 2012182 2012182 G A RPS2 Nonsense_Mutation p.Q267* 0.33 TCGA-21-1081-01 16 21279036 21279036 T A CRYM Missense_Mutation p.K171I 0.35 tolerated(0.1) benign(0.142) TCGA-21-1081-01 16 2142539 2142539 C T PKD1 Silent p.G3737G 0.41 TCGA-21-1081-01 16 2903228 2903228 C A PRSS22 Missense_Mutation p.V274F 0.24 deleterious(0) probably_damaging(0.999) TCGA-21-1081-01 16 3641121 3641121 C G SLX4 Missense_Mutation p.E840Q 0.31 deleterious(0.03) benign(0.181) TCGA-21-1081-01 16 3795299 3795299 T C CREBBP Missense_Mutation p.Y1298C 0.20 unknown(0) TCGA-21-1081-01 16 3820624 3820624 G A CREBBP Nonsense_Mutation p.Q943* 0.41 TCGA-21-1081-01 16 67313920 67313920 C T PLEKHG4 5'UTR 0.26 TCGA-21-1081-01 16 70605000 70605000 C A SF3B3 Missense_Mutation p.D1137E 0.44 tolerated(0.1) benign(0.312) TCGA-21-1081-01 16 74330733 74330733 G T PSMD7 5'UTR 0.62 TCGA-21-1081-01 16 75146775 75146775 G T LDHD Silent p.I401I 0.45 TCGA-21-1081-01 17 10401181 10401181 T A MYH1 Missense_Mutation p.N1412I 0.54 deleterious(0) benign(0.163) TCGA-21-1081-01 17 10427843 10427843 T C MYH2 Silent p.R1705R 0.45 TCGA-21-1081-01 17 18149623 18149623 G A FLII Missense_Mutation p.R1069W 0.05 deleterious(0) probably_damaging(0.972) TCGA-21-1081-01 17 7160277 7160277 G A ELP5 Missense_Mutation p.E187K 0.62 tolerated(0.19) benign(0.065) TCGA-21-1081-01 17 73732371 73732371 C T ITGB4 Silent p.G588G 0.57 TCGA-21-1081-01 17 7533469 7533469 G A SHBG 5'UTR 0.13 TCGA-21-1081-01 18 6980547 6980547 G A LAMA1 Missense_Mutation p.L1994F 0.19 tolerated(0.13) benign(0.043) TCGA-21-1081-01 19 13928130 13928130 C T ZSWIM4 Silent p.A427A 0.45 TCGA-21-1081-01 19 15587093 15587093 C T PGLYRP2 Missense_Mutation p.A130T 0.26 deleterious(0) probably_damaging(0.983) TCGA-21-1081-01 19 21216941 21216941 A T ZNF430 Silent p.G91G 0.47 TCGA-21-1081-01 19 33113388 33113388 C T ANKRD27 Silent p.A589A 0.39 TCGA-21-1081-01 19 33703303 33703303 G A SLC7A10 Missense_Mutation p.T228M 0.35 deleterious(0.02) possibly_damaging(0.816) TCGA-21-1081-01 19 36557157 36557157 A G WDR62 Splice_Site p.X131_splice 0.25 TCGA-21-1081-01 19 37005140 37005155 CACTCATAAGGCTTAT - ZNF260 Frame_Shift_Del p.D329Vfs*18 0.11 TCGA-21-1081-01 19 43262355 43262355 C T PSG8 Missense_Mutation p.D170N 0.15 tolerated(0.06) benign(0.021) TCGA-21-1081-01 19 44273660 44273660 T G KCNN4 Missense_Mutation p.H328P 0.14 deleterious(0) probably_damaging(0.979) TCGA-21-1081-01 19 4511803 4511803 C G PLIN4 Missense_Mutation p.K709N 0.14 deleterious(0) possibly_damaging(0.493) TCGA-21-1081-01 19 45971729 45971729 C T FOSB 5'UTR 0.60 TCGA-21-1081-01 19 53912214 53912214 A G ZNF765 Missense_Mutation p.N469S 0.25 tolerated(0.07) possibly_damaging(0.61) TCGA-21-1081-01 19 55290069 55290069 C A KIR2DL1 Missense_Mutation p.P224T 0.21 tolerated(0.53) benign(0.012) TCGA-21-1081-01 19 56320484 56320484 G T NLRP11 Missense_Mutation p.L498I 0.25 deleterious(0.02) probably_damaging(0.994) TCGA-21-1081-01 19 56443411 56443411 G T NLRP13 Missense_Mutation p.F89L 0.37 tolerated(0.08) benign(0.026) TCGA-21-1081-01 19 9577783 9577783 C G ZNF560 Missense_Mutation p.D614H 0.25 tolerated(0.57) probably_damaging(0.961) TCGA-21-1081-01 1 10715863 10715863 G A CASZ1 Missense_Mutation p.T503M 0.18 deleterious(0) probably_damaging(0.999) TCGA-21-1081-01 1 1168415 1168415 G A B3GALT6 Missense_Mutation p.D253N 0.58 tolerated(0.49) benign(0.027) TCGA-21-1081-01 1 1245137 1245137 G A PUSL1 Missense_Mutation p.A184T 0.17 tolerated(0.12) benign(0.035) TCGA-21-1081-01 1 12786065 12786065 G A AADACL3 3'Flank 0.29 TCGA-21-1081-01 1 144886204 144886204 C A PDE4DIP Missense_Mutation p.R1010S 0.16 tolerated(0.11) possibly_damaging(0.46) TCGA-21-1081-01 1 144886205 144886205 C T PDE4DIP Missense_Mutation p.R1010K 0.16 tolerated(0.27) benign(0.011) TCGA-21-1081-01 1 150919447 150919447 T C SETDB1 Missense_Mutation p.L409P 0.31 deleterious(0.05) benign(0.229) TCGA-21-1081-01 1 151739754 151739754 C G OAZ3 Missense_Mutation p.D49E 0.30 tolerated(0.28) benign(0.004) TCGA-21-1081-01 1 153752486 153752486 C G SLC27A3 3'UTR 0.30 TCGA-21-1081-01 1 158300821 158300821 G T CD1B Silent p.I31I 0.32 TCGA-21-1081-01 1 158325727 158325727 C A CD1E Silent p.R246R 0.28 TCGA-21-1081-01 1 158687805 158687805 A T OR6K3 Missense_Mutation p.I34N 0.28 deleterious(0) possibly_damaging(0.903) TCGA-21-1081-01 1 158725617 158725617 G T OR6K6 Missense_Mutation p.A338S 0.34 tolerated(0.82) benign(0.003) TCGA-21-1081-01 1 159558188 159558188 C T APCS Missense_Mutation p.S121L 0.37 deleterious(0) probably_damaging(0.98) TCGA-21-1081-01 1 175937610 175937610 C A RFWD2 Intron 0.35 TCGA-21-1081-01 1 179660053 179660053 C A TDRD5 Missense_Mutation p.P1028H 0.37 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-21-1081-01 1 206669617 206669617 G A IKBKE 3'UTR 0.18 TCGA-21-1081-01 1 215408273 215408273 C T KCNK2 Nonsense_Mutation p.Q356* 0.14 TCGA-21-1081-01 1 216270496 216270496 G T USH2A Missense_Mutation p.P1563T 0.35 probably_damaging(0.983) TCGA-21-1081-01 1 22150032 22150032 C T LDLRAD2 3'UTR 0.39 TCGA-21-1081-01 1 224345054 224345054 T G FBXO28 Missense_Mutation p.V238G 0.34 deleterious(0.04) possibly_damaging(0.69) TCGA-21-1081-01 1 227843568 227843568 T A ZNF678 3'UTR 0.29 TCGA-21-1081-01 1 238090621 238090621 G T RP11-193H5.1 RNA 0.31 TCGA-21-1081-01 1 247492835 247492835 C A ZNF496 Nonsense_Mutation p.E16* 0.21 TCGA-21-1081-01 1 248202133 248202133 C T OR2L2 Silent p.C188C 0.17 TCGA-21-1081-01 1 26608936 26608936 G A UBXN11 Nonsense_Mutation p.R473* 0.34 TCGA-21-1081-01 1 38435242 38435242 C G SF3A3 Splice_Site p.X390_splice 0.28 TCGA-21-1081-01 1 42654556 42654556 A C FOXJ3 Silent p.S499S 0.43 TCGA-21-1081-01 1 52824024 52824024 C A CC2D1B Silent p.P480P 0.33 TCGA-21-1081-01 1 67109263 67109263 C T SGIP1 Missense_Mutation p.S107L 0.10 deleterious(0) probably_damaging(0.945) TCGA-21-1081-01 1 898253 898253 G A KLHL17 Missense_Mutation p.R333H 0.28 deleterious(0.01) possibly_damaging(0.482) TCGA-21-1081-01 1 9777668 9777668 C T PIK3CD Missense_Mutation p.A335V 0.26 tolerated(0.15) probably_damaging(0.999) TCGA-21-1081-01 1 9787039 9787039 C T PIK3CD Missense_Mutation p.R1024C 0.11 tolerated(0.14) probably_damaging(0.999) TCGA-21-1081-01 20 3842088 3842088 A T MAVS Missense_Mutation p.R134S 0.05 deleterious(0) possibly_damaging(0.856) TCGA-21-1081-01 20 44236738 44236738 G T WFDC9 3'UTR 0.60 TCGA-21-1081-01 20 44806640 44806640 G A CDH22 Silent p.A620A 0.69 TCGA-21-1081-01 20 52779309 52779309 T G CYP24A1 Missense_Mutation p.K313Q 0.59 tolerated(0.09) possibly_damaging(0.543) TCGA-21-1081-01 20 62373567 62373567 C T SLC2A4RG Missense_Mutation p.R222C 0.63 deleterious(0) probably_damaging(0.988) TCGA-21-1081-01 20 77049 77049 T A DEFB125 Silent p.T154T 0.15 TCGA-21-1081-01 21 10862857 10862857 C A IGHV1OR21-1 Nonsense_Mutation p.Y51* 0.15 TCGA-21-1081-01 21 35183447 35183447 C T ITSN1 Missense_Mutation p.R830C 0.35 tolerated(0.06) benign(0.01) TCGA-21-1081-01 21 46074476 46074476 C T KRTAP12-4 Missense_Mutation p.C19Y 0.46 deleterious(0.01) probably_damaging(0.919) TCGA-21-1081-01 21 46896339 46896339 G T COL18A1 Silent p.T471T 0.32 TCGA-21-1081-01 22 16448977 16448977 G T OR11H1 Missense_Mutation p.S276R 0.43 deleterious(0.03) benign(0.279) TCGA-21-1081-01 22 21988525 21988525 G T CCDC116 Missense_Mutation p.R96L 0.31 tolerated(0.09) benign(0.133) TCGA-21-1081-01 22 22931073 22931073 A G IGLV2-33 Missense_Mutation p.N90D 0.45 deleterious_low_confidence(0.02) benign(0.089) TCGA-21-1081-01 22 24829635 24829636 CG - ADORA2A Frame_Shift_Del p.Q89Efs*12 0.09 TCGA-21-1081-01 22 38251638 38251638 A G EIF3L Silent p.P120P 0.54 TCGA-21-1081-01 22 50897990 50897990 G A SBF1 Silent p.S1199S 0.62 TCGA-21-1081-01 2 131098603 131098603 C A CCDC115 Missense_Mutation p.R103M 0.35 deleterious(0) probably_damaging(0.922) TCGA-21-1081-01 2 136872656 136872656 T C CXCR4 Missense_Mutation p.H285R 0.20 tolerated(0.46) benign(0.014) TCGA-21-1081-01 2 163393587 163393587 G A KCNH7 Missense_Mutation p.S104F 0.37 deleterious(0.04) possibly_damaging(0.755) TCGA-21-1081-01 2 167141224 167141224 G A SCN9A Silent p.A571A 0.24 TCGA-21-1081-01 2 171693312 171693312 G A GAD1 Missense_Mutation p.R186Q 0.41 deleterious(0) probably_damaging(0.951) TCGA-21-1081-01 2 178080348 178080348 C T HNRNPA3 Nonsense_Mutation p.R52* 0.22 TCGA-21-1081-01 2 179396364 179396364 G A TTN Missense_Mutation p.T34993M 0.40 TCGA-21-1081-01 2 179435080 179435080 T G TTN Missense_Mutation p.Q25260P 0.13 TCGA-21-1081-01 2 179527705 179527705 G T TTN Missense_Mutation p.P12260T 0.33 TCGA-21-1081-01 2 190335583 190335583 A C WDR75 Missense_Mutation p.K676N 0.25 tolerated(0.14) possibly_damaging(0.71) TCGA-21-1081-01 2 1926397 1926397 G T MYT1L Missense_Mutation p.L382I 0.15 tolerated_low_confidence(0.05) probably_damaging(0.999) TCGA-21-1081-01 2 196892735 196892735 A G DNAH7 Silent p.D145D 0.36 TCGA-21-1081-01 2 211525340 211525340 G T CPS1 Missense_Mutation p.L1302F 0.19 tolerated(0.21) possibly_damaging(0.902) TCGA-21-1081-01 2 214794767 214794767 A T SPAG16 Missense_Mutation p.E433V 0.18 tolerated(0.16) benign(0.403) TCGA-21-1081-01 2 225669817 225669817 C T DOCK10 Missense_Mutation p.R1359K 0.38 tolerated(1) probably_damaging(0.989) TCGA-21-1081-01 2 29295558 29295558 G T C2orf71 Missense_Mutation p.P524T 0.18 tolerated(0.54) benign(0.009) TCGA-21-1081-01 2 36771551 36771551 A G CRIM1 Missense_Mutation p.I886V 0.44 tolerated(0.33) possibly_damaging(0.651) TCGA-21-1081-01 2 3691412 3691412 G - COLEC11 Frame_Shift_Del p.G189Afs*3 0.39 TCGA-21-1081-01 2 42511812 42511812 G C EML4 Missense_Mutation p.G327A 0.25 deleterious(0) probably_damaging(1) TCGA-21-1081-01 2 42511825 42511825 C T EML4 Silent p.G331G 0.23 TCGA-21-1081-01 2 675626 675626 G A TMEM18 Missense_Mutation p.T21M 0.47 deleterious(0.02) probably_damaging(0.955) TCGA-21-1081-01 2 74900824 74900824 G T SEMA4F Missense_Mutation p.V231L 0.39 tolerated(0.07) benign(0.071) TCGA-21-1081-01 2 74900882 74900882 T C SEMA4F Missense_Mutation p.F250S 0.21 deleterious(0) probably_damaging(0.999) TCGA-21-1081-01 2 79313582 79313582 G T REG1B Missense_Mutation p.Q78K 0.19 tolerated(0.98) benign(0.001) TCGA-21-1081-01 2 85829204 85829204 A G TMEM150A 5'UTR 0.42 TCGA-21-1081-01 2 88888334 88888334 G T EIF2AK3 Silent p.V417V 0.19 TCGA-21-1081-01 2 89976266 89976266 G C IGKV2D-30 Missense_Mutation p.S46T 0.30 deleterious(0.02) benign(0.121) TCGA-21-1081-01 2 98429176 98429176 T C TMEM131 Missense_Mutation p.I552V 0.20 tolerated(0.09) possibly_damaging(0.604) TCGA-21-1081-01 3 100105680 100105680 T C TOMM70A Missense_Mutation p.Y156C 0.24 deleterious(0) probably_damaging(0.998) TCGA-21-1081-01 3 101284244 101284244 T G TRMT10C Missense_Mutation p.F207V 0.10 deleterious(0) probably_damaging(0.984) TCGA-21-1081-01 3 102181156 102181156 C G ZPLD1 Missense_Mutation p.P221R 0.10 deleterious(0) probably_damaging(0.96) TCGA-21-1081-01 3 113956040 113956040 C A ZNF80 5'UTR 0.28 TCGA-21-1081-01 3 134089920 134089920 G A AMOTL2 Missense_Mutation p.A119V 0.20 tolerated(0.19) probably_damaging(0.994) TCGA-21-1081-01 3 148757868 148757868 C T HLTF Missense_Mutation p.A818T 0.17 tolerated(0.46) benign(0.001) TCGA-21-1081-01 3 169663867 169663867 G T RP11-379K17.4 RNA 0.03 TCGA-21-1081-01 3 173993266 173993266 C A NLGN1 Missense_Mutation p.L270M 0.32 deleterious(0) probably_damaging(0.997) TCGA-21-1081-01 3 180364958 180364958 G A CCDC39 Missense_Mutation p.A479V 0.17 tolerated(0.78) benign(0.002) TCGA-21-1081-01 3 184024268 184024268 C T PSMD2 Silent p.D645D 0.09 TCGA-21-1081-01 3 187089076 187089076 C G RTP4 Missense_Mutation p.P219R 0.08 deleterious(0.03) benign(0.007) TCGA-21-1081-01 3 41979618 41979618 G T ULK4 Missense_Mutation p.H70Q 0.53 deleterious(0) probably_damaging(0.966) TCGA-21-1081-01 3 42251744 42251744 G A TRAK1 Intron 0.52 TCGA-21-1081-01 3 47316827 47316827 C T KIF9 Missense_Mutation p.D83N 0.54 tolerated(0.23) benign(0.013) TCGA-21-1081-01 3 57545543 57545543 G T PDE12 Missense_Mutation p.A548S 0.52 tolerated(0.12) possibly_damaging(0.459) TCGA-21-1081-01 3 74334634 74334634 G A CNTN3 Silent p.Y842Y 0.55 TCGA-21-1081-01 3 9786059 9786059 C T BRPF1 Silent p.H929H 0.61 TCGA-21-1081-01 3 97869132 97869132 C A OR5H14 Missense_Mutation p.F301L 0.07 tolerated(1) benign(0) TCGA-21-1081-01 3 97984036 97984036 C G OR5H6 Missense_Mutation p.P303R 0.09 deleterious(0) benign(0.404) TCGA-21-1081-01 4 128564925 128564925 T - INTU Frame_Shift_Del p.N132Kfs*11 0.35 TCGA-21-1081-01 4 159568269 159568269 G T RXFP1 Missense_Mutation p.G558C 0.48 deleterious(0) probably_damaging(1) TCGA-21-1081-01 4 159791564 159791564 C G FNIP2 Silent p.T964T 0.31 TCGA-21-1081-01 4 183602986 183602986 G C TENM3 Silent p.G618G 0.29 TCGA-21-1081-01 4 187540801 187540801 T G FAT1 Missense_Mutation p.E2313D 0.51 possibly_damaging(0.469) TCGA-21-1081-01 4 46252458 46252458 T C GABRA2 Missense_Mutation p.K408R 0.49 tolerated(0.26) benign(0.327) TCGA-21-1081-01 4 55140744 55140744 G A PDGFRA Silent p.L535L 0.42 TCGA-21-1081-01 4 6325261 6325261 C T PPP2R2C Missense_Mutation p.R371Q 0.23 tolerated(0.15) benign(0.015) TCGA-21-1081-01 4 6843887 6843887 A G KIAA0232 Missense_Mutation p.K109E 0.48 deleterious(0) probably_damaging(0.915) TCGA-21-1081-01 4 77700446 77700446 G C SHROOM3 3'UTR 0.41 TCGA-21-1081-01 5 123980279 123980279 C G ZNF608 Missense_Mutation p.D1261H 0.52 deleterious(0.01) possibly_damaging(0.759) TCGA-21-1081-01 5 128957974 128957974 C A ADAMTS19 Missense_Mutation p.T562K 0.58 tolerated(0.11) benign(0.045) TCGA-21-1081-01 5 1323906 1323906 T A CLPTM1L Nonsense_Mutation p.K426* 0.42 TCGA-21-1081-01 5 145493753 145493753 C A LARS Silent p.V1149V 0.51 TCGA-21-1081-01 5 177665625 177665625 A G COL23A1 3'UTR 0.53 TCGA-21-1081-01 5 180219325 180219325 G A MGAT1 Missense_Mutation p.P216L 0.47 probably_damaging(0.967) TCGA-21-1081-01 5 19483468 19483468 C T CDH18 Silent p.S608S 0.32 TCGA-21-1081-01 5 36049404 36049404 C A UGT3A2 Missense_Mutation p.V144F 0.31 tolerated(0.12) benign(0.139) TCGA-21-1081-01 5 40972664 40972664 C A C7 Missense_Mutation p.P681H 0.29 deleterious(0) probably_damaging(1) TCGA-21-1081-01 5 90119297 90119297 G A GPR98 Missense_Mutation p.V5418M 0.48 benign(0) TCGA-21-1081-01 6 108492769 108492769 C T NR2E1 Nonsense_Mutation p.R45* 0.52 TCGA-21-1081-01 6 10875151 10875151 C A GCM2 Missense_Mutation p.D200Y 0.18 deleterious(0) possibly_damaging(0.875) TCGA-21-1081-01 6 127796683 127796683 C G SOGA3 Missense_Mutation p.D830H 0.54 deleterious(0) probably_damaging(0.984) TCGA-21-1081-01 6 152560753 152560753 T C SYNE1 Missense_Mutation p.Q6661R 0.47 benign(0.001) TCGA-21-1081-01 6 158014086 158014086 A G ZDHHC14 Missense_Mutation p.N158S 0.25 deleterious(0.03) possibly_damaging(0.733) TCGA-21-1081-01 6 162475142 162475142 T G PARK2 Missense_Mutation p.H200P 0.27 tolerated(0.23) benign(0.055) TCGA-21-1081-01 6 28966578 28966578 C G ZNF311 Silent p.L116L 0.26 TCGA-21-1081-01 6 30671420 30671420 G A MDC1 Missense_Mutation p.A1847V 0.32 tolerated(0.06) benign(0.005) TCGA-21-1081-01 6 31513318 31513318 T G ATP6V1G2 Missense_Mutation p.Q75P 0.05 tolerated(0.06) possibly_damaging(0.478) TCGA-21-1081-01 6 31691947 31691947 G A C6orf25 Silent p.P146P 0.32 TCGA-21-1081-01 6 32008523 32008523 G A CYP21A2 Nonsense_Mutation p.W399* 0.13 TCGA-21-1081-01 6 32135181 32135181 G C EGFL8 Missense_Mutation p.R219P 0.13 deleterious(0) possibly_damaging(0.809) TCGA-21-1081-01 6 36652134 36652134 C T CDKN1A Missense_Mutation p.R86W 0.24 tolerated(0.22) benign(0.002) TCGA-21-1081-01 6 38891855 38891855 C A DNAH8 Missense_Mutation p.Q3410K 0.57 benign(0.016) TCGA-21-1081-01 6 46977481 46977481 T C GPR110 Missense_Mutation p.T564A 0.53 tolerated(0.09) benign(0.21) TCGA-21-1081-01 6 49582418 49582418 G T RHAG Missense_Mutation p.H263Q 0.41 tolerated(0.2) benign(0.009) TCGA-21-1081-01 6 55128622 55128622 T A HCRTR2 Splice_Site p.X254_splice 0.40 TCGA-21-1081-01 6 80223280 80223280 C G LCA5 Missense_Mutation p.Q123H 0.46 tolerated(0.55) benign(0.178) TCGA-21-1081-01 7 101845426 101845426 G C CUX1 Missense_Mutation p.R961P 0.29 deleterious(0) unknown(0) TCGA-21-1081-01 7 111409709 111409709 T C DOCK4 Missense_Mutation p.Y1226C 0.40 deleterious(0) possibly_damaging(0.882) TCGA-21-1081-01 7 113558772 113558772 A T PPP1R3A Missense_Mutation p.L94I 0.08 tolerated(0.28) benign(0.387) TCGA-21-1081-01 7 11676275 11676275 A T THSD7A Silent p.P168P 0.27 TCGA-21-1081-01 7 128494544 128494544 G A FLNC Missense_Mutation p.G2269S 0.20 tolerated(0.51) possibly_damaging(0.665) TCGA-21-1081-01 7 131853184 131853184 G A PLXNA4 Missense_Mutation p.L1389F 0.17 deleterious(0) probably_damaging(1) TCGA-21-1081-01 7 131912348 131912348 A T PLXNA4 Missense_Mutation p.Y582N 0.29 tolerated(0.32) benign(0.001) TCGA-21-1081-01 7 142723568 142723568 T C OR9A2 Missense_Mutation p.I218V 0.26 tolerated(0.22) benign(0.075) TCGA-21-1081-01 7 148984730 148984730 G T ZNF783 3'Flank 0.19 TCGA-21-1081-01 7 150417223 150417223 G C GIMAP1 Missense_Mutation p.G44A 0.21 deleterious(0) probably_damaging(0.999) TCGA-21-1081-01 7 1539535 1539535 G A INTS1 Silent p.P223P 0.29 TCGA-21-1081-01 7 20418789 20418789 C T ITGB8 Silent p.S168S 0.15 TCGA-21-1081-01 7 27284804 27284804 G A EVX1 Missense_Mutation p.A189T 0.32 deleterious(0.03) probably_damaging(0.99) TCGA-21-1081-01 7 29152366 29152366 T C CPVL Missense_Mutation p.N81S 0.08 deleterious(0) possibly_damaging(0.771) TCGA-21-1081-01 7 4874375 4874375 G C RADIL Missense_Mutation p.P427A 0.16 deleterious(0.04) probably_damaging(0.961) TCGA-21-1081-01 7 5353167 5353167 C T TNRC18 Missense_Mutation p.R2452Q 0.33 benign(0.238) TCGA-21-1081-01 7 57194316 57194316 C A ZNF479 Missense_Mutation p.R50I 0.19 deleterious(0) probably_damaging(0.93) TCGA-21-1081-01 7 65426044 65426044 G A GUSB Missense_Mutation p.T599M 0.27 tolerated(0.08) benign(0.022) TCGA-21-1081-01 7 80427490 80427490 T A SEMA3C Missense_Mutation p.N350I 0.04 tolerated(0.08) probably_damaging(0.99) TCGA-21-1081-01 7 83119461 83119461 C A SEMA3E Missense_Mutation p.S82I 0.33 tolerated(0.07) probably_damaging(0.922) TCGA-21-1081-01 7 89861917 89861917 G A STEAP2 Silent p.P484P 0.40 TCGA-21-1081-01 7 90356022 90356022 C G CDK14 Missense_Mutation p.Q71E 0.45 tolerated_low_confidence(0.1) benign(0.444) TCGA-21-1081-01 7 98535291 98535291 A C TRRAP Missense_Mutation p.I1418L 0.05 benign(0.013) TCGA-21-1081-01 8 101661695 101661695 C T SNX31 Silent p.A16A 0.36 TCGA-21-1081-01 8 121519088 121519088 C T MTBP Missense_Mutation p.P624S 0.18 tolerated(0.22) benign(0.026) TCGA-21-1081-01 8 133044286 133044286 G T OC90 Missense_Mutation p.F291L 0.23 tolerated(1) benign(0.006) TCGA-21-1081-01 8 134062194 134062194 A C SLA Silent p.G107G 0.17 TCGA-21-1081-01 8 145699868 145699868 A G FOXH1 Missense_Mutation p.I284T 0.19 deleterious(0.02) benign(0.439) TCGA-21-1081-01 8 145773569 145773569 G A ARHGAP39 Missense_Mutation p.P301S 0.37 deleterious(0.03) possibly_damaging(0.837) TCGA-21-1081-01 8 42940421 42940421 A G FNTA Missense_Mutation p.Q379R 0.05 deleterious_low_confidence(0) benign(0.071) TCGA-21-1081-01 8 52359584 52359584 T A PXDNL Missense_Mutation p.Q502L 0.17 tolerated(0.18) possibly_damaging(0.589) TCGA-21-1081-01 8 55538412 55538412 T G RP1 Missense_Mutation p.L657R 0.28 tolerated(0.19) benign(0.243) TCGA-21-1081-01 8 67547217 67547217 C A VCPIP1 Missense_Mutation p.S1063I 0.12 deleterious_low_confidence(0) benign(0.125) TCGA-21-1081-01 8 77767456 77767456 C A ZFHX4 Missense_Mutation p.L2767I 0.36 probably_damaging(0.979) TCGA-21-1081-01 8 77768504 77768504 C A ZFHX4 Missense_Mutation p.S3116Y 0.38 probably_damaging(0.992) TCGA-21-1081-01 8 85097182 85097182 T C RALYL 5'UTR 0.36 TCGA-21-1081-01 8 92346641 92346641 A C SLC26A7 Missense_Mutation p.K254T 0.37 deleterious(0) possibly_damaging(0.702) TCGA-21-1081-01 8 99961551 99961551 C A OSR2 Missense_Mutation p.A124D 0.35 deleterious(0) benign(0.379) TCGA-21-1081-01 9 100459559 100459559 C A XPA Missense_Mutation p.G6W 0.50 deleterious_low_confidence(0.01) unknown(0) TCGA-21-1081-01 9 122075418 122075418 G T BRINP1 Nonsense_Mutation p.Y72* 0.38 TCGA-21-1081-01 9 32631226 32631226 T C TAF1L Missense_Mutation p.E1451G 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-21-1081-01 9 35697714 35697714 C T TLN1 3'UTR 0.54 TCGA-21-1081-01 9 94486211 94486211 C T ROR2 Missense_Mutation p.M855I 0.50 tolerated_low_confidence(0.21) benign(0) TCGA-21-1081-01 X 11133044 11133044 G T HCCS Missense_Mutation p.V64L 0.49 deleterious(0.05) benign(0.087) TCGA-21-1081-01 X 133304114 133304114 C G MIR18B RNA 0.56 TCGA-21-1081-01 X 138714595 138714595 A G MCF2 Silent p.L84L 0.54 TCGA-21-1081-01 X 138867415 138867415 G C ATP11C Missense_Mutation p.R549G 0.48 deleterious(0) probably_damaging(1) TCGA-21-1081-01 X 147024824 147024824 A G FMR1 Silent p.R483R 0.63 TCGA-21-1081-01 X 151093159 151093159 G T MAGEA4 3'UTR 0.55 TCGA-21-1081-01 X 2161101 2161101 C T DHRSX Missense_Mutation p.R256H 0.20 tolerated(0.25) benign(0.055) TCGA-21-1081-01 X 32486704 32486704 T A DMD Missense_Mutation p.I1025F 0.07 possibly_damaging(0.467) TCGA-21-1081-01 X 46502717 46502717 T C SLC9A7 Missense_Mutation p.I523V 0.50 tolerated(1) benign(0.009) TCGA-21-1081-01 X 75394775 75394775 C G PBDC1 Silent p.V49V 0.15 TCGA-21-1081-01 X 83362035 83362035 C T RPS6KA6 Silent p.L375L 0.50 TCGA-21-1081-01 X 86068160 86068160 G A DACH2 Missense_Mutation p.A473T 0.56 deleterious(0.02) benign(0.339) TCGA-21-1081-01 Y 15372158 15372158 C A UTY Missense_Mutation p.E1282D 0.67 tolerated(0.15) probably_damaging(0.997) TCGA-21-1082-01 10 100995476 100995476 G T HPSE2 Nonsense_Mutation p.Y28* 0.50 TCGA-21-1082-01 10 124390682 124390682 C G DMBT1 Missense_Mutation p.I1948M 0.56 deleterious(0) probably_damaging(0.998) TCGA-21-1082-01 10 124908007 124908007 T C HMX2 Missense_Mutation p.V38A 0.45 tolerated_low_confidence(1) benign(0) TCGA-21-1082-01 10 125805840 125805840 G A CHST15 5'UTR 0.82 TCGA-21-1082-01 10 129913511 129913511 A G MKI67 Silent p.D387D 0.50 TCGA-21-1082-01 10 134161654 134161654 G T LRRC27 Silent p.L240L 0.56 TCGA-21-1082-01 10 135350610 135350610 A G CYP2E1 Silent p.R337R 0.49 TCGA-21-1082-01 10 16794569 16794569 C A RSU1 Silent p.G189G 0.50 TCGA-21-1082-01 10 26589901 26589901 C T GAD2 3'UTR 0.34 TCGA-21-1082-01 10 27538363 27538363 C G RP11-85G18.6 Intron 0.16 TCGA-21-1082-01 10 29600144 29600144 A G LYZL1 3'UTR 0.41 TCGA-21-1082-01 10 30984918 30984918 C T SVILP1 RNA 0.39 TCGA-21-1082-01 10 38345355 38345356 AG - ZNF33A Frame_Shift_Del p.R769Kfs*10 0.28 TCGA-21-1082-01 10 43617412 43617412 T C RET Missense_Mutation p.W917R 0.51 deleterious(0) probably_damaging(1) TCGA-21-1082-01 10 45472831 45472831 G A C10orf10 3'UTR 0.50 TCGA-21-1082-01 10 46250506 46250506 G A FAM21C Missense_Mutation p.D455N 0.18 tolerated(0.05) possibly_damaging(0.728) TCGA-21-1082-01 10 48416667 48416667 G T GDF2 Silent p.A9A 0.42 TCGA-21-1082-01 10 50531266 50531266 G T C10orf71 Nonsense_Mutation p.E226* 0.50 TCGA-21-1082-01 10 50945831 50945831 C A OGDHL Splice_Site p.X864_splice 0.39 TCGA-21-1082-01 10 73766942 73766942 G A CHST3 Silent p.K51K 0.38 TCGA-21-1082-01 10 96447881 96447881 G C CYP2C18 Splice_Site p.X111_splice 0.21 TCGA-21-1082-01 11 108068067 108068067 G A NPAT Missense_Mutation p.H40Y 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-21-1082-01 11 110035819 110035819 G T ZC3H12C Missense_Mutation p.R670L 0.31 tolerated(0.09) possibly_damaging(0.651) TCGA-21-1082-01 11 113860588 113860588 C A HTR3A 3'UTR 0.40 TCGA-21-1082-01 11 116652918 116652918 C A ZNF259 Nonsense_Mutation p.G379* 0.24 TCGA-21-1082-01 11 118239480 118239480 C T UBE4A Missense_Mutation p.H86Y 0.03 tolerated(0.07) benign(0.409) TCGA-21-1082-01 11 118771471 118771471 C A BCL9L Missense_Mutation p.R994M 0.34 possibly_damaging(0.73) TCGA-21-1082-01 11 118779294 118779294 C A BCL9L Missense_Mutation p.A33S 0.40 possibly_damaging(0.739) TCGA-21-1082-01 11 119003611 119003611 A G HINFP Missense_Mutation p.T305A 0.29 deleterious(0) benign(0.222) TCGA-21-1082-01 11 122944327 122944327 G A CLMP Missense_Mutation p.P326L 0.31 deleterious(0.01) benign(0.091) TCGA-21-1082-01 11 123908887 123908887 G A OR10G7 Silent p.F274F 0.06 TCGA-21-1082-01 11 124310776 124310776 A G OR8B8 Missense_Mutation p.I69T 0.40 deleterious_low_confidence(0.04) possibly_damaging(0.842) TCGA-21-1082-01 11 124489361 124489361 C G PANX3 Missense_Mutation p.Q237E 0.37 tolerated(0.13) probably_damaging(0.987) TCGA-21-1082-01 11 124545283 124545283 C G SPA17 Silent p.A41A 0.31 TCGA-21-1082-01 11 125792753 125792753 G A DDX25 Missense_Mutation p.E477K 0.27 deleterious(0.02) benign(0.105) TCGA-21-1082-01 11 132812994 132812994 C A OPCML 5'UTR 0.67 TCGA-21-1082-01 11 5373110 5373110 C T OR51B6 Missense_Mutation p.R125C 0.04 tolerated(1) benign(0.001) TCGA-21-1082-01 11 5537718 5537718 G C UBQLNL 5'UTR 0.46 TCGA-21-1082-01 11 558632 558632 G A C11orf35 Missense_Mutation p.A98V 0.50 tolerated(0.06) benign(0.055) TCGA-21-1082-01 11 57004340 57004340 C A APLNR Missense_Mutation p.G47C 0.36 deleterious(0) probably_damaging(0.999) TCGA-21-1082-01 11 57971091 57971091 G A OR1S2 Missense_Mutation p.P188L 0.30 deleterious(0.03) possibly_damaging(0.845) TCGA-21-1082-01 11 57996082 57996082 A G OR10Q1 Missense_Mutation p.I89T 0.28 tolerated(0.36) benign(0.046) TCGA-21-1082-01 11 64662806 64662806 C T ATG2A Missense_Mutation p.D1846N 0.12 deleterious(0) probably_damaging(0.995) TCGA-21-1082-01 11 65266466 65266466 G T MALAT1 RNA 0.03 TCGA-21-1082-01 11 65829419 65829419 C A SF3B2 Missense_Mutation p.P643T 0.16 deleterious(0) probably_damaging(1) TCGA-21-1082-01 11 66571578 66571578 G A C11orf80 Missense_Mutation p.E319K 0.06 deleterious(0.04) possibly_damaging(0.801) TCGA-21-1082-01 11 68679036 68679036 G C IGHMBP2 Missense_Mutation p.E226Q 0.30 deleterious(0) probably_damaging(0.997) TCGA-21-1082-01 11 8942911 8942911 C A C11orf16 Missense_Mutation p.K452N 0.47 tolerated(0.1) benign(0.009) TCGA-21-1082-01 12 103246702 103246702 C A PAH Missense_Mutation p.V245L 0.23 deleterious(0) probably_damaging(0.995) TCGA-21-1082-01 12 111758074 111758074 C A CUX2 Missense_Mutation p.P754H 0.35 deleterious(0.05) benign(0.195) TCGA-21-1082-01 12 11244724 11244724 C A TAS2R43 Missense_Mutation p.W35C 0.32 tolerated(0.05) benign(0.105) TCGA-21-1082-01 12 117769016 117769016 C A NOS1 5'Flank 0.36 TCGA-21-1082-01 12 119773029 119773029 G T CCDC60 Silent p.S16S 0.37 TCGA-21-1082-01 12 12630119 12630119 G C DUSP16 Missense_Mutation p.S549C 0.04 deleterious(0.03) possibly_damaging(0.711) TCGA-21-1082-01 12 130184594 130184594 G T TMEM132D Missense_Mutation p.D243E 0.52 tolerated(0.21) benign(0.036) TCGA-21-1082-01 12 130921800 130921800 C A RIMBP2 Missense_Mutation p.A548S 0.55 tolerated(0.1) benign(0.035) TCGA-21-1082-01 12 15262049 15262049 T C RERG Missense_Mutation p.S199G 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.448) TCGA-21-1082-01 12 21327564 21327564 C A SLCO1B1 Missense_Mutation p.P94T 0.36 deleterious(0) probably_damaging(1) TCGA-21-1082-01 12 27863861 27863861 G A MRPS35 Missense_Mutation p.A29T 0.30 tolerated_low_confidence(0.53) benign(0.001) TCGA-21-1082-01 12 2983384 2983384 G A FOXM1 Silent p.I87I 0.38 TCGA-21-1082-01 12 30866803 30866803 T C CAPRIN2 Silent p.R839R 0.04 TCGA-21-1082-01 12 38714880 38714880 A C ALG10B Silent p.I429I 0.04 TCGA-21-1082-01 12 43822459 43822459 C A ADAMTS20 Missense_Mutation p.W1211C 0.28 deleterious(0) probably_damaging(0.99) TCGA-21-1082-01 12 43822460 43822460 C A ADAMTS20 Missense_Mutation p.W1211L 0.28 deleterious(0) probably_damaging(0.972) TCGA-21-1082-01 12 4705888 4705888 C T DYRK4 Missense_Mutation p.L185F 0.31 deleterious(0) probably_damaging(0.997) TCGA-21-1082-01 12 52793796 52793796 G T KRT82 Silent p.A305A 0.31 TCGA-21-1082-01 12 53671319 53671319 G A ESPL1 Silent p.L717L 0.04 TCGA-21-1082-01 12 55759095 55759095 G T OR6C75 Silent p.L67L 0.32 TCGA-21-1082-01 12 59270239 59270239 G C LRIG3 Missense_Mutation p.H895D 0.35 tolerated(0.6) benign(0.063) TCGA-21-1082-01 12 64828588 64828588 C G XPOT Missense_Mutation p.P862A 0.34 tolerated(0.96) benign(0.002) TCGA-21-1082-01 12 6554564 6554564 C A CD27 Intron 0.38 TCGA-21-1082-01 12 6669685 6669685 C G NOP2 Silent p.L529L 0.37 TCGA-21-1082-01 12 72316832 72316832 G T TBC1D15 Missense_Mutation p.V642F 0.18 deleterious(0.05) benign(0.077) TCGA-21-1082-01 12 75601219 75601219 T G KCNC2 Missense_Mutation p.D182A 0.26 deleterious(0.03) benign(0.002) TCGA-21-1082-01 12 75892431 75892431 C G KRR1 3'UTR 0.04 TCGA-21-1082-01 12 78574771 78574771 C G NAV3 Missense_Mutation p.Q1858E 0.30 tolerated(0.1) probably_damaging(0.992) TCGA-21-1082-01 12 88483161 88483161 G C CEP290 Missense_Mutation p.S1226C 0.24 benign(0.009) TCGA-21-1082-01 12 93246010 93246010 G A EEA1 Missense_Mutation p.R195C 0.05 deleterious(0.03) benign(0.276) TCGA-21-1082-01 12 99028154 99028154 C T IKBIP Missense_Mutation p.E73K 0.39 deleterious(0) probably_damaging(0.981) TCGA-21-1082-01 13 111296737 111296737 G T CARS2 Missense_Mutation p.Q471K 0.32 tolerated(0.31) benign(0.002) TCGA-21-1082-01 13 23912852 23912852 G - SACS Frame_Shift_Del p.A1723Hfs*2 0.39 TCGA-21-1082-01 13 36700176 36700176 C T DCLK1 Silent p.P33P 0.52 TCGA-21-1082-01 13 49281220 49281220 C A CYSLTR2 Missense_Mutation p.S89R 0.46 tolerated(0.28) possibly_damaging(0.78) TCGA-21-1082-01 13 49906110 49906110 G T CAB39L Silent p.I269I 0.47 TCGA-21-1082-01 13 52728274 52728274 G C NEK3 Missense_Mutation p.A51G 0.15 deleterious(0.01) probably_damaging(0.99) TCGA-21-1082-01 13 52728276 52728276 C T NEK3 Silent p.E50E 0.16 TCGA-21-1082-01 13 77714278 77714278 C T MYCBP2 Silent p.K2436K 0.30 TCGA-21-1082-01 13 80910902 80910902 T - SPRY2 Frame_Shift_Del p.K313Nfs*42 0.27 TCGA-21-1082-01 13 92003006 92003006 G C MIR17HG RNA 0.29 TCGA-21-1082-01 13 95121139 95121139 T C DCT Silent p.V152V 0.30 TCGA-21-1082-01 14 101456440 101456440 G A SNORD114-29 RNA 0.10 TCGA-21-1082-01 14 105172429 105172429 C T INF2 Silent p.A253A 0.23 TCGA-21-1082-01 14 20404125 20404125 G T OR4K1 Missense_Mutation p.Q100H 0.37 deleterious(0) probably_damaging(0.998) TCGA-21-1082-01 14 20529020 20529020 G T OR4L1 Missense_Mutation p.V273L 0.36 deleterious(0.02) benign(0.291) TCGA-21-1082-01 14 21499221 21499221 A G TPPP2 Missense_Mutation p.K75R 0.38 tolerated(0.11) benign(0.167) TCGA-21-1082-01 14 22459073 22459073 C T TRAV16 Silent p.I75I 0.32 TCGA-21-1082-01 14 23396021 23396021 G A PRMT5 Silent p.F151F 0.15 TCGA-21-1082-01 14 24902184 24902184 C A KHNYN Missense_Mutation p.S508Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-21-1082-01 14 31626075 31626075 C T HECTD1 Missense_Mutation p.E635K 0.22 tolerated(0.31) benign(0.325) TCGA-21-1082-01 14 34420062 34420062 G A EGLN3 5'UTR 0.10 TCGA-21-1082-01 14 55243242 55243242 G A SAMD4A Silent p.L676L 0.34 TCGA-21-1082-01 14 77710757 77710757 G A TMEM63C Silent p.L469L 0.27 TCGA-21-1082-01 14 96134582 96134582 G C TCL6 Intron 0.29 TCGA-21-1082-01 14 96134656 96134656 G T TCL6 Intron 0.32 TCGA-21-1082-01 15 101609021 101609021 C G LRRK1 Missense_Mutation p.R2006G 0.24 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-21-1082-01 15 23889505 23889505 C A MAGEL2 Nonsense_Mutation p.E526* 0.30 TCGA-21-1082-01 15 28202856 28202856 C A OCA2 Missense_Mutation p.W554C 0.33 deleterious(0) probably_damaging(1) TCGA-21-1082-01 15 28515967 28515967 G T HERC2 Silent p.L377L 0.07 TCGA-21-1082-01 15 33916158 33916158 T A RYR3 Missense_Mutation p.D836E 0.32 possibly_damaging(0.453) TCGA-21-1082-01 15 39909961 39909961 G C FSIP1 Silent p.L558L 0.32 TCGA-21-1082-01 15 40913317 40913317 G T CASC5 Missense_Mutation p.Q311H 0.38 deleterious(0.04) possibly_damaging(0.801) TCGA-21-1082-01 15 44094070 44094070 C G HYPK 3'UTR 0.16 TCGA-21-1082-01 15 45437155 45437155 G A DUOX1 Silent p.L733L 0.34 TCGA-21-1082-01 15 62160946 62160946 G C VPS13C Missense_Mutation p.S3592C 0.38 tolerated(0.06) benign(0.031) TCGA-21-1082-01 15 65157959 65157959 G C PLEKHO2 Missense_Mutation p.E449Q 0.27 deleterious(0) probably_damaging(0.998) TCGA-21-1082-01 15 72699064 72699064 G T TMEM202 Silent p.L153L 0.18 TCGA-21-1082-01 15 72958009 72958009 G T GOLGA6B Missense_Mutation p.V556F 0.31 tolerated(0.06) possibly_damaging(0.765) TCGA-21-1082-01 15 74653958 74653958 G C CYP11A1 Intron 0.25 TCGA-21-1082-01 15 83832774 83832774 G C HDGFRP3 Missense_Mutation p.I46M 0.03 deleterious(0) possibly_damaging(0.489) TCGA-21-1082-01 15 85447453 85447453 C G SLC28A1 Nonsense_Mutation p.S196* 0.11 TCGA-21-1082-01 16 15715618 15715618 C - KIAA0430 Frame_Shift_Del p.A871Lfs*9 0.23 TCGA-21-1082-01 16 1798335 1798335 G T MAPK8IP3 Missense_Mutation p.R361L 0.28 tolerated(0.58) benign(0.04) TCGA-21-1082-01 16 1810531 1810531 A G MAPK8IP3 Silent p.K484K 0.06 TCGA-21-1082-01 16 28489163 28489163 C A CLN3 Missense_Mutation p.W364C 0.34 tolerated(0.2) benign(0.008) TCGA-21-1082-01 16 2880270 2880270 G A ZG16B Missense_Mutation p.E8K 0.22 tolerated(0.11) benign(0.096) TCGA-21-1082-01 16 3165365 3165365 C T ZNF205 Missense_Mutation p.R23C 0.29 deleterious_low_confidence(0.04) benign(0.306) TCGA-21-1082-01 16 3166496 3166496 G T ZNF205 Silent p.T144T 0.34 TCGA-21-1082-01 16 3274587 3274587 C A ZNF200 Nonsense_Mutation p.E165* 0.30 TCGA-21-1082-01 16 3778919 3778919 C A CREBBP Missense_Mutation p.Q2043H 0.30 unknown(0) TCGA-21-1082-01 16 48177847 48177847 A T ABCC12 Nonsense_Mutation p.Y83* 0.29 TCGA-21-1082-01 16 4925176 4925176 G T UBN1 Missense_Mutation p.G922V 0.15 tolerated(0.54) benign(0.424) TCGA-21-1082-01 16 4925375 4925375 G A UBN1 Silent p.L988L 0.13 TCGA-21-1082-01 16 67380272 67380272 G C LRRC36 Missense_Mutation p.L104F 0.10 tolerated(0.09) probably_damaging(0.999) TCGA-21-1082-01 16 69703905 69703905 C G NFAT5 Missense_Mutation p.I465M 0.32 probably_damaging(0.998) TCGA-21-1082-01 16 81991640 81991640 C A PLCG2 3'UTR 0.21 TCGA-21-1082-01 16 84473113 84473113 G C ATP2C2 Missense_Mutation p.D398H 0.36 deleterious(0) probably_damaging(1) TCGA-21-1082-01 16 89949798 89949798 G C TCF25 Missense_Mutation p.G78R 0.38 tolerated(0.12) benign(0.127) TCGA-21-1082-01 17 10406199 10406199 C T MYH1 Silent p.L989L 0.58 TCGA-21-1082-01 17 1340206 1340206 C T CRK Missense_Mutation p.R162Q 0.06 deleterious(0.01) benign(0.046) TCGA-21-1082-01 17 18881244 18881244 C A FAM83G Missense_Mutation p.V579L 0.54 tolerated(0.16) benign(0.004) TCGA-21-1082-01 17 21208426 21208426 C T MAP2K3 Silent p.L254L 0.16 TCGA-21-1082-01 17 2202567 2202567 C G SMG6 Missense_Mutation p.A494P 0.67 tolerated(0.09) benign(0.013) TCGA-21-1082-01 17 26110106 26110106 C A NOS2 Missense_Mutation p.R165M 0.47 deleterious(0) probably_damaging(0.977) TCGA-21-1082-01 17 34106008 34106008 C T MMP28 Missense_Mutation p.R88H 0.06 tolerated(0.06) possibly_damaging(0.855) TCGA-21-1082-01 17 38073389 38073389 T C GSDMB Missense_Mutation p.I61V 0.61 tolerated(0.06) possibly_damaging(0.599) TCGA-21-1082-01 17 41062954 41062954 C T G6PC Silent p.F195F 0.26 TCGA-21-1082-01 17 436130 436130 G T VPS53 Silent p.I679I 0.08 TCGA-21-1082-01 17 4842465 4842465 C T SLC25A11 Silent p.K46K 0.05 TCGA-21-1082-01 17 57290380 57290380 G A SMG8 Silent p.K732K 0.05 TCGA-21-1082-01 17 65716057 65716057 G A NOL11 Silent p.L97L 0.57 TCGA-21-1082-01 17 66352862 66352862 C G ARSG Silent p.L207L 0.46 TCGA-21-1082-01 17 72539045 72539045 G C CD300C Missense_Mutation p.P161R 0.04 deleterious(0.05) benign(0.036) TCGA-21-1082-01 17 72588795 72588795 G A C17orf77 Missense_Mutation p.E204K 0.44 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-21-1082-01 17 7404932 7404932 C G POLR2A Missense_Mutation p.L745V 0.17 probably_damaging(0.986) TCGA-21-1082-01 17 7578269 7578274 GATGCT - TP53 In_Frame_Del p.Q192_H193del 0.58 TCGA-21-1082-01 17 80019121 80019121 T C DUS1L Missense_Mutation p.Y269C 0.07 tolerated(0.07) benign(0.008) TCGA-21-1082-01 17 9792867 9792867 C A GLP2R Missense_Mutation p.L503I 0.61 tolerated(0.07) benign(0.02) TCGA-21-1082-01 18 12311000 12311000 C T TUBB6 Silent p.S75S 0.26 TCGA-21-1082-01 18 21140243 21140243 G A NPC1 Missense_Mutation p.A278V 0.16 tolerated(0.39) benign(0.005) TCGA-21-1082-01 18 28968436 28968436 A T DSG4 Missense_Mutation p.E108V 0.39 deleterious(0) probably_damaging(0.997) TCGA-21-1082-01 18 31318626 31318626 G A ASXL3 Missense_Mutation p.A420T 0.11 benign(0.005) TCGA-21-1082-01 18 31463287 31463287 A G NOL4 Silent p.N548N 0.37 TCGA-21-1082-01 18 32621608 32621608 C G MAPRE2 Silent p.R35R 0.32 TCGA-21-1082-01 18 334857 334857 C A COLEC12 Missense_Mutation p.L567F 0.46 tolerated(0.37) unknown(0) TCGA-21-1082-01 18 43698219 43698219 G T HAUS1 Missense_Mutation p.R93M 0.31 tolerated(0.15) benign(0.017) TCGA-21-1082-01 18 5434014 5434014 C G EPB41L3 Missense_Mutation p.G238R 0.33 deleterious(0) probably_damaging(1) TCGA-21-1082-01 18 61156657 61156657 G A SERPINB5 Silent p.T128T 0.36 TCGA-21-1082-01 18 74091429 74091429 C A ZNF516 Missense_Mutation p.G881C 0.37 deleterious(0) probably_damaging(0.931) TCGA-21-1082-01 19 10624540 10624540 C A S1PR5 Missense_Mutation p.G383V 0.15 deleterious(0.04) benign(0.006) TCGA-21-1082-01 19 12244172 12244172 G A ZNF20 Missense_Mutation p.H277Y 0.31 deleterious(0) probably_damaging(1) TCGA-21-1082-01 19 12576048 12576048 C T ZNF709 Missense_Mutation p.G230R 0.36 deleterious(0.02) probably_damaging(1) TCGA-21-1082-01 19 12911789 12911789 G A PRDX2 Silent p.R66R 0.37 TCGA-21-1082-01 19 12936735 12936735 C G RTBDN Missense_Mutation p.G191R 0.42 deleterious(0.02) possibly_damaging(0.469) TCGA-21-1082-01 19 13084225 13084225 C G DAND5 Nonsense_Mutation p.S116* 0.32 TCGA-21-1082-01 19 15164639 15164639 G T CASP14 Missense_Mutation p.R91S 0.24 tolerated(0.54) benign(0.002) TCGA-21-1082-01 19 15636340 15636340 C T CYP4F22 Missense_Mutation p.R65C 0.33 deleterious(0.04) benign(0.011) TCGA-21-1082-01 19 15730553 15730553 A T CYP4F8 RNA 0.22 TCGA-21-1082-01 19 16275547 16275547 C T CIB3 Missense_Mutation p.R175Q 0.34 deleterious(0.01) benign(0.025) TCGA-21-1082-01 19 16918476 16918477 GG A NWD1 Frame_Shift_Del p.G1273Afs*12 0.19 TCGA-21-1082-01 19 17367325 17367325 G T USHBP1 Silent p.P475P 0.36 TCGA-21-1082-01 19 17988611 17988611 G T SLC5A5 Missense_Mutation p.G260C 0.29 deleterious(0) probably_damaging(1) TCGA-21-1082-01 19 19408020 19408020 C A SUGP1 Nonsense_Mutation p.E341* 0.37 TCGA-21-1082-01 19 19626730 19626730 T C NDUFA13 5'UTR 0.25 TCGA-21-1082-01 19 19680384 19680384 C A PBX4 Silent p.R214R 0.31 TCGA-21-1082-01 19 3381786 3381786 C T NFIC Missense_Mutation p.A36V 0.19 deleterious(0) probably_damaging(0.999) TCGA-21-1082-01 19 34263041 34263041 C A CHST8 Silent p.I116I 0.30 TCGA-21-1082-01 19 34890981 34890981 C T GPI 3'UTR 0.40 TCGA-21-1082-01 19 36018701 36018701 C - SBSN Frame_Shift_Del p.Q162Rfs*278 0.28 TCGA-21-1082-01 19 36223873 36223873 C T KMT2B Silent p.P2141P 0.36 TCGA-21-1082-01 19 36271879 36271879 G T ARHGAP33 Missense_Mutation p.R296L 0.28 deleterious_low_confidence(0) benign(0.433) TCGA-21-1082-01 19 36940782 36940782 G A ZNF566 Silent p.F119F 0.06 TCGA-21-1082-01 19 37676877 37676877 G T ZNF585B Missense_Mutation p.P521H 0.04 deleterious(0.01) probably_damaging(1) TCGA-21-1082-01 19 38572709 38572709 C T SIPA1L3 Silent p.H168H 0.37 TCGA-21-1082-01 19 38590616 38590616 G T SIPA1L3 Silent p.R560R 0.26 TCGA-21-1082-01 19 38865285 38865285 G A PSMD8 Missense_Mutation p.R15Q 0.33 tolerated_low_confidence(0.17) unknown(0) TCGA-21-1082-01 19 4554405 4554405 C G SEMA6B Missense_Mutation p.E256Q 0.06 tolerated(0.07) possibly_damaging(0.728) TCGA-21-1082-01 19 48259978 48259978 G C GLTSCR2 Missense_Mutation p.E469D 0.09 deleterious(0) probably_damaging(0.987) TCGA-21-1082-01 19 50912016 50912016 C T POLD1 Intron 0.05 TCGA-21-1082-01 19 51215215 51215215 C A SHANK1 Nonsense_Mutation p.E317* 0.43 TCGA-21-1082-01 19 51215216 51215216 C A SHANK1 Missense_Mutation p.Q316H 0.41 probably_damaging(0.961) TCGA-21-1082-01 19 52130928 52130928 C A SIGLEC5 Missense_Mutation p.A357S 0.25 tolerated(0.13) possibly_damaging(0.822) TCGA-21-1082-01 19 53057142 53057142 C G ZNF808 Missense_Mutation p.R325G 0.04 tolerated(0.32) benign(0.002) TCGA-21-1082-01 19 53667833 53667833 A T ZNF665 Missense_Mutation p.V637D 0.05 tolerated(0.24) possibly_damaging(0.66) TCGA-21-1082-01 19 53884525 53884525 G T ZNF525 Missense_Mutation p.R231S 0.35 tolerated(0.41) probably_damaging(0.996) TCGA-21-1082-01 19 54757925 54757925 G T LILRB5 Missense_Mutation p.P438H 0.29 deleterious(0) benign(0.089) TCGA-21-1082-01 19 6417822 6417822 C - KHSRP Frame_Shift_Del p.V337Sfs*8 0.18 TCGA-21-1082-01 19 7693180 7693180 T G XAB2 Missense_Mutation p.E19A 0.50 deleterious(0.01) benign(0.271) TCGA-21-1082-01 19 8367425 8367425 C T CD320 Silent p.E257E 0.62 TCGA-21-1082-01 19 9058499 9058499 A T MUC16 Silent p.S9649S 0.53 TCGA-21-1082-01 19 9965506 9965506 G T OLFM2 Silent p.R241R 0.17 TCGA-21-1082-01 1 114682416 114682416 G A SYT6 Silent p.F26F 0.37 TCGA-21-1082-01 1 119964870 119964870 G A HSD3B2 Missense_Mutation p.R249Q 0.13 tolerated(0.68) benign(0.007) TCGA-21-1082-01 1 145530988 145530988 A C ITGA10 Silent p.G240G 0.39 TCGA-21-1082-01 1 145558450 145558450 G T ANKRD35 Missense_Mutation p.G131C 0.32 deleterious(0) probably_damaging(0.995) TCGA-21-1082-01 1 145561885 145561885 C G ANKRD35 Missense_Mutation p.P525A 0.30 tolerated(0.11) benign(0.001) TCGA-21-1082-01 1 150675797 150675797 G A HORMAD1 Nonsense_Mutation p.Q341* 0.19 TCGA-21-1082-01 1 150676596 150676596 G C HORMAD1 Missense_Mutation p.Q316E 0.10 tolerated(0.13) benign(0.354) TCGA-21-1082-01 1 151259525 151259525 C T ZNF687 Missense_Mutation p.S253L 0.02 tolerated(0.37) benign(0.003) TCGA-21-1082-01 1 152770430 152770430 G C LCE1D Missense_Mutation p.G54R 0.27 unknown(0) TCGA-21-1082-01 1 153012573 153012573 C T SPRR2D 3'UTR 0.32 TCGA-21-1082-01 1 153430421 153430421 G A S100A7 Missense_Mutation p.A56V 0.37 tolerated(0.22) benign(0.002) TCGA-21-1082-01 1 153994815 153994815 C A NUP210L Missense_Mutation p.D1435Y 0.28 deleterious(0) probably_damaging(1) TCGA-21-1082-01 1 154101761 154101761 C A NUP210L Missense_Mutation p.G357V 0.22 deleterious(0) possibly_damaging(0.517) TCGA-21-1082-01 1 154101762 154101762 C A NUP210L Nonsense_Mutation p.G357* 0.22 TCGA-21-1082-01 1 155258084 155258084 C G HCN3 Missense_Mutation p.L719V 0.42 tolerated_low_confidence(0.07) benign(0.064) TCGA-21-1082-01 1 155271192 155271192 C T PKLR 5'UTR 0.13 TCGA-21-1082-01 1 156377681 156377681 G C C1orf61 Silent p.L86L 0.26 TCGA-21-1082-01 1 158300781 158300781 G C CD1B Missense_Mutation p.Q45E 0.35 tolerated(0.21) benign(0.003) TCGA-21-1082-01 1 167096142 167096142 T A DUSP27 Missense_Mutation p.W592R 0.38 deleterious(0) probably_damaging(0.999) TCGA-21-1082-01 1 167096175 167096175 G C DUSP27 Missense_Mutation p.E603Q 0.28 deleterious(0) possibly_damaging(0.886) TCGA-21-1082-01 1 172543053 172543053 C T SUCO Missense_Mutation p.P358S 0.12 deleterious(0.02) probably_damaging(0.963) TCGA-21-1082-01 1 17313641 17313641 C T ATP13A2 Missense_Mutation p.A995T 0.31 deleterious(0.03) benign(0.025) TCGA-21-1082-01 1 175372538 175372538 G T TNR Missense_Mutation p.D238E 0.34 tolerated(0.06) benign(0.015) TCGA-21-1082-01 1 176661321 176661321 G T PAPPA2 Missense_Mutation p.D831Y 0.34 deleterious(0) probably_damaging(1) TCGA-21-1082-01 1 17707550 17707550 G T PADI6 RNA 0.42 TCGA-21-1082-01 1 178490104 178490104 G A TEX35 Intron 0.57 TCGA-21-1082-01 1 179064181 179064181 G A TOR3A Missense_Mutation p.R341H 0.09 tolerated(0.46) benign(0.008) TCGA-21-1082-01 1 179452274 179452274 C A AXDND1 Missense_Mutation p.A670E 0.28 tolerated(0.89) benign(0.001) TCGA-21-1082-01 1 181767540 181767540 C A CACNA1E Missense_Mutation p.S2171Y 0.30 deleterious(0) probably_damaging(0.962) TCGA-21-1082-01 1 1849770 1849770 G C TMEM52 Missense_Mutation p.L91V 0.11 tolerated(0.13) possibly_damaging(0.578) TCGA-21-1082-01 1 186304477 186304477 G A TPR Missense_Mutation p.S1635F 0.08 benign(0.006) TCGA-21-1082-01 1 186369990 186369990 G T OCLM 5'UTR 0.28 TCGA-21-1082-01 1 193044956 193044956 C G TROVE2 Missense_Mutation p.A196G 0.26 tolerated(0.1) benign(0.024) TCGA-21-1082-01 1 196716519 196716519 G T CFH 3'UTR 0.38 TCGA-21-1082-01 1 196857325 196857325 T C CFHR4 Silent p.C15C 0.38 TCGA-21-1082-01 1 198668699 198668699 C T PTPRC Missense_Mutation p.S102L 0.38 tolerated(0.26) benign(0.002) TCGA-21-1082-01 1 202917542 202917542 C T ADIPOR1 Missense_Mutation p.E50K 0.11 tolerated(0.15) benign(0) TCGA-21-1082-01 1 204924039 204924039 G T NFASC Silent p.P165P 0.33 TCGA-21-1082-01 1 210977470 210977470 T C KCNH1 Missense_Mutation p.I501V 0.57 deleterious(0.01) possibly_damaging(0.786) TCGA-21-1082-01 1 216420066 216420066 G T USH2A Silent p.T890T 0.57 TCGA-21-1082-01 1 217793441 217793441 C A GPATCH2 Missense_Mutation p.V153F 0.52 tolerated(0.69) benign(0.021) TCGA-21-1082-01 1 226413377 226413377 A T MIXL1 Missense_Mutation p.N188I 0.49 deleterious(0.01) benign(0.185) TCGA-21-1082-01 1 237819148 237819148 G T RYR2 Missense_Mutation p.A2665S 0.61 benign(0.194) TCGA-21-1082-01 1 24402651 24402651 G C MYOM3 Missense_Mutation p.P900R 0.34 deleterious(0.02) probably_damaging(0.98) TCGA-21-1082-01 1 24402652 24402652 G T MYOM3 Missense_Mutation p.P900T 0.34 deleterious(0) possibly_damaging(0.607) TCGA-21-1082-01 1 247769047 247769047 C A OR2G3 Missense_Mutation p.P54T 0.45 tolerated(0.06) benign(0.01) TCGA-21-1082-01 1 2938436 2938436 C T ACTRT2 Silent p.A62A 0.39 TCGA-21-1082-01 1 33944933 33944933 C A ZSCAN20 Missense_Mutation p.P15Q 0.34 tolerated(0.63) benign(0.017) TCGA-21-1082-01 1 39924844 39924844 G A MACF1 Missense_Mutation p.A5036T 0.26 possibly_damaging(0.81) TCGA-21-1082-01 1 41493778 41493778 G C SCMH1 3'UTR 0.06 TCGA-21-1082-01 1 62740649 62740649 C T KANK4 Missense_Mutation p.V43M 0.35 deleterious(0) probably_damaging(1) TCGA-21-1082-01 1 6579649 6579649 C A NOL9 3'Flank 0.28 TCGA-21-1082-01 1 78195549 78195549 T G USP33 Missense_Mutation p.Q269P 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-21-1082-01 1 78309068 78309068 G T FAM73A Silent p.T324T 0.27 TCGA-21-1082-01 1 78470641 78470641 G C DNAJB4 5'UTR 0.26 TCGA-21-1082-01 1 92433813 92433813 G C BRDT Missense_Mutation p.K147N 0.08 tolerated(0.07) benign(0.187) TCGA-21-1082-01 1 94668160 94668161 TG A ARHGAP29 Frame_Shift_Del p.A361Vfs*8 0.22 TCGA-21-1082-01 20 2293656 2293656 G T TGM3 Missense_Mutation p.R218L 0.55 deleterious(0) probably_damaging(1) TCGA-21-1082-01 20 23065613 23065613 G A CD93 Missense_Mutation p.S406L 0.54 deleterious(0) probably_damaging(1) TCGA-21-1082-01 20 2378641 2378641 C G TGM6 Missense_Mutation p.D207E 0.20 deleterious(0.01) possibly_damaging(0.741) TCGA-21-1082-01 20 26094600 26094600 G T NCOR1P1 RNA 0.43 TCGA-21-1082-01 20 31583433 31583433 A T SUN5 Missense_Mutation p.S176T 0.04 tolerated(0.08) probably_damaging(0.997) TCGA-21-1082-01 20 34099282 34099282 G T CEP250 Missense_Mutation p.G2386C 0.55 probably_damaging(0.994) TCGA-21-1082-01 20 34241510 34241510 C G RBM12 Missense_Mutation p.D579H 0.03 deleterious(0) probably_damaging(1) TCGA-21-1082-01 20 34457435 34457435 A T PHF20 Missense_Mutation p.E295V 0.20 tolerated(0.12) benign(0.236) TCGA-21-1082-01 20 35467634 35467634 C G SOGA1 Missense_Mutation p.E300Q 0.46 deleterious(0) probably_damaging(0.999) TCGA-21-1082-01 20 3673727 3673727 T A SIGLEC1 Missense_Mutation p.Q1187L 0.31 deleterious(0.04) possibly_damaging(0.497) TCGA-21-1082-01 20 3679853 3679853 C A SIGLEC1 Silent p.V594V 0.64 TCGA-21-1082-01 20 42194975 42194975 C A SGK2 Nonsense_Mutation p.S7* 0.56 TCGA-21-1082-01 20 42265829 42265829 G A IFT52 Silent p.E352E 0.50 TCGA-21-1082-01 20 42680164 42680164 G T TOX2 Missense_Mutation p.E210D 0.55 tolerated(0.69) probably_damaging(0.984) TCGA-21-1082-01 20 42680165 42680165 G T TOX2 Nonsense_Mutation p.E211* 0.55 TCGA-21-1082-01 20 47267949 47267949 G A PREX1 Silent p.F880F 0.15 TCGA-21-1082-01 20 47846779 47846779 G T DDX27 Silent p.A339A 0.13 TCGA-21-1082-01 20 7963080 7963080 C A TMX4 Missense_Mutation p.D290Y 0.46 deleterious(0) possibly_damaging(0.595) TCGA-21-1082-01 21 32119357 32119357 G A KRTAP21-2 Missense_Mutation p.S55F 0.38 tolerated_low_confidence(0.55) unknown(0) TCGA-21-1082-01 21 34860903 34860903 A T DNAJC28 Silent p.T266T 0.34 TCGA-21-1082-01 21 34918588 34918588 A C SON Silent p.A49A 0.33 TCGA-21-1082-01 21 34968086 34968086 C G CRYZL1 Silent p.L285L 0.10 TCGA-21-1082-01 21 41423894 41423894 G T DSCAM Missense_Mutation p.P1726T 0.31 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-21-1082-01 21 42749714 42749714 A T MX2 Splice_Site p.X84_splice 0.27 TCGA-21-1082-01 21 47541491 47541491 G T COL6A2 Missense_Mutation p.D494Y 0.11 deleterious(0.04) benign(0.369) TCGA-21-1082-01 21 47685963 47685963 C T MCM3AP Silent p.G969G 0.05 TCGA-21-1082-01 22 17072956 17072956 G A CCT8L2 Missense_Mutation p.S162F 0.35 tolerated(0.34) benign(0.007) TCGA-21-1082-01 22 19052470 19052470 G A DGCR2 Missense_Mutation p.R147C 0.31 deleterious(0) probably_damaging(0.998) TCGA-21-1082-01 22 22569532 22569532 C A IGLV10-54 Missense_Mutation p.P75H 0.41 deleterious_low_confidence(0) benign(0.338) TCGA-21-1082-01 22 22893364 22893364 A C PRAME Missense_Mutation p.F57V 0.27 deleterious(0) possibly_damaging(0.894) TCGA-21-1082-01 22 30738239 30738239 C T SF3A1 Nonsense_Mutation p.W276* 0.45 TCGA-21-1082-01 22 31823067 31823067 G T DRG1 Missense_Mutation p.Q301H 0.29 deleterious(0.04) probably_damaging(1) TCGA-21-1082-01 22 39219119 39219119 G A NPTXR Missense_Mutation p.P416L 0.26 deleterious(0.02) probably_damaging(1) TCGA-21-1082-01 22 39626195 39626195 A G PDGFB Silent p.F165F 0.32 TCGA-21-1082-01 22 40819597 40819597 G A MKL1 Silent p.P190P 0.06 TCGA-21-1082-01 22 50167860 50167860 C A BRD1 3'UTR 0.20 TCGA-21-1082-01 22 50167861 50167861 C A BRD1 3'UTR 0.19 TCGA-21-1082-01 2 103322396 103322396 G T SLC9A2 Splice_Site p.X690_splice 0.47 TCGA-21-1082-01 2 109381376 109381376 C T RANBP2 Nonsense_Mutation p.Q1461* 0.23 TCGA-21-1082-01 2 136399252 136399252 G C R3HDM1 Missense_Mutation p.D456H 0.10 deleterious(0.02) probably_damaging(0.957) TCGA-21-1082-01 2 141267568 141267568 G T LRP1B Missense_Mutation p.P2776H 0.52 probably_damaging(0.971) TCGA-21-1082-01 2 141458115 141458115 C T LRP1B Missense_Mutation p.C2168Y 0.48 benign(0.384) TCGA-21-1082-01 2 141806642 141806648 TGGTTTC - LRP1B Frame_Shift_Del p.E566Ifs*12 0.54 TCGA-21-1082-01 2 158634759 158634759 C A ACVR1 Nonsense_Mutation p.G143* 0.54 TCGA-21-1082-01 2 16734260 16734260 T C FAM49A Missense_Mutation p.T306A 0.18 deleterious(0) probably_damaging(0.973) TCGA-21-1082-01 2 171806048 171806048 G A GORASP2 Splice_Site p.X49_splice 0.47 TCGA-21-1082-01 2 203071955 203071955 G C SUMO1 3'UTR 0.11 TCGA-21-1082-01 2 21227262 21227262 C T APOB Missense_Mutation p.R3989H 0.23 benign(0) TCGA-21-1082-01 2 215833487 215833487 C T ABCA12 Missense_Mutation p.R1912H 0.07 tolerated(0.12) benign(0.009) TCGA-21-1082-01 2 216916253 216916253 T A PECR Silent p.A174A 0.49 TCGA-21-1082-01 2 219920247 219920247 C A IHH Silent p.V306V 0.53 TCGA-21-1082-01 2 220419368 220419368 C T OBSL1 Silent p.V1568V 0.53 TCGA-21-1082-01 2 227896713 227896713 A T COL4A4 Silent p.P1255P 0.31 TCGA-21-1082-01 2 234628331 234628331 C G UGT1A4 Missense_Mutation p.Q289E 0.34 tolerated(0.26) benign(0.035) TCGA-21-1082-01 2 238265997 238265997 C A COL6A3 Missense_Mutation p.G2192V 0.39 benign(0.172) TCGA-21-1082-01 2 238991931 238991931 G T SCLY Missense_Mutation p.G282C 0.15 deleterious(0) benign(0.212) TCGA-21-1082-01 2 239059639 239059639 G T KLHL30 Missense_Mutation p.G557V 0.42 deleterious(0) possibly_damaging(0.493) TCGA-21-1082-01 2 242065899 242065899 G A PASK Nonsense_Mutation p.R811* 0.06 TCGA-21-1082-01 2 242793267 242793267 G T PDCD1 Silent p.G270G 0.38 TCGA-21-1082-01 2 277367 277367 C T ACP1 3'UTR 0.13 TCGA-21-1082-01 2 27885071 27885071 C G SUPT7L 5'UTR 0.23 TCGA-21-1082-01 2 48915391 48915391 G T LHCGR Missense_Mutation p.F515L 0.27 tolerated(1) benign(0) TCGA-21-1082-01 2 48915421 48915421 G T LHCGR Silent p.V505V 0.28 TCGA-21-1082-01 2 48952852 48952852 G T LHCGR Missense_Mutation p.P116T 0.34 tolerated(0.06) benign(0.195) TCGA-21-1082-01 2 54159070 54159070 C A PSME4 Missense_Mutation p.L406F 0.34 deleterious(0.04) benign(0.359) TCGA-21-1082-01 2 64176177 64176177 T C VPS54 Silent p.L377L 0.23 TCGA-21-1082-01 2 69092922 69092922 G C BMP10 Missense_Mutation p.I372M 0.03 deleterious(0) possibly_damaging(0.812) TCGA-21-1082-01 2 74687383 74687383 G T WBP1 Missense_Mutation p.D129Y 0.26 deleterious(0) probably_damaging(1) TCGA-21-1082-01 2 80874741 80874741 C A CTNNA2 Missense_Mutation p.A821D 0.32 deleterious(0) probably_damaging(0.978) TCGA-21-1082-01 2 85051255 85051255 C A TRABD2A Missense_Mutation p.V337L 0.28 tolerated_low_confidence(0.96) benign(0.001) TCGA-21-1082-01 2 85921493 85921493 C T GNLY 5'UTR 0.15 TCGA-21-1082-01 2 86371601 86371601 T C IMMT Silent p.K689K 0.05 TCGA-21-1082-01 2 87042711 87042711 C A CD8B 3'UTR 0.31 TCGA-21-1082-01 2 89475889 89475889 C A IGKV2-24 Missense_Mutation p.D95Y 0.37 deleterious(0.01) possibly_damaging(0.747) TCGA-21-1082-01 2 90193388 90193388 T C IGKV1D-13 Silent p.F105F 0.12 TCGA-21-1082-01 2 90260102 90260102 C A IGKV1D-8 Missense_Mutation p.L69M 0.31 deleterious(0.02) possibly_damaging(0.898) TCGA-21-1082-01 2 98351734 98351734 C G ZAP70 Missense_Mutation p.I368M 0.36 deleterious(0.03) probably_damaging(0.922) TCGA-21-1082-01 2 99294890 99294890 G A MGAT4A Missense_Mutation p.R47C 0.33 deleterious(0) probably_damaging(0.994) TCGA-21-1082-01 3 100170731 100170731 G C LNP1 Missense_Mutation p.E109Q 0.34 tolerated(1) benign(0.001) TCGA-21-1082-01 3 113955299 113955299 C A ZNF80 Missense_Mutation p.S208I 0.36 deleterious(0.01) possibly_damaging(0.752) TCGA-21-1082-01 3 126741080 126741080 G T PLXNA1 Silent p.L1397L 0.37 TCGA-21-1082-01 3 133647730 133647730 C A C3orf36 5'UTR 0.52 TCGA-21-1082-01 3 133673888 133673888 C T SLCO2A1 Missense_Mutation p.G183R 0.27 deleterious(0) probably_damaging(1) TCGA-21-1082-01 3 136729163 136729163 G T IL20RB 3'UTR 0.23 TCGA-21-1082-01 3 140277516 140277516 G A CLSTN2 Missense_Mutation p.E620K 0.09 tolerated(0.11) benign(0.017) TCGA-21-1082-01 3 145839017 145839017 C G PLOD2 Missense_Mutation p.E74Q 0.16 deleterious(0.04) benign(0.006) TCGA-21-1082-01 3 148793697 148793697 G A HLTF Silent p.I122I 0.07 TCGA-21-1082-01 3 150290033 150290033 C T EIF2A Missense_Mutation p.P367L 0.31 deleterious(0) possibly_damaging(0.527) TCGA-21-1082-01 3 155215112 155215112 C A PLCH1 Missense_Mutation p.D619Y 0.18 deleterious(0) probably_damaging(0.997) TCGA-21-1082-01 3 155314056 155314056 C A PLCH1 Missense_Mutation p.R52L 0.50 deleterious(0) probably_damaging(0.95) TCGA-21-1082-01 3 157160863 157160863 C A PTX3 3'UTR 0.24 TCGA-21-1082-01 3 165503965 165503965 G A BCHE Missense_Mutation p.T551I 0.20 deleterious(0.01) benign(0.179) TCGA-21-1082-01 3 167035303 167035303 G C ZBBX Missense_Mutation p.Q356E 0.11 tolerated(0.49) possibly_damaging(0.487) TCGA-21-1082-01 3 167086345 167086345 C T ZBBX Missense_Mutation p.R29Q 0.19 tolerated(0.47) benign(0.232) TCGA-21-1082-01 3 167319966 167319966 G A WDR49 Silent p.A67A 0.11 TCGA-21-1082-01 3 170720401 170720401 T A SLC2A2 Silent p.G344G 0.14 TCGA-21-1082-01 3 170802943 170802943 C G TNIK Missense_Mutation p.D988H 0.13 tolerated(0.08) probably_damaging(0.984) TCGA-21-1082-01 3 179319578 179319578 C G MRPL47 Missense_Mutation p.G82A 0.16 deleterious(0) probably_damaging(1) TCGA-21-1082-01 3 180703750 180703750 G C DNAJC19 Missense_Mutation p.H82D 0.07 deleterious(0) probably_damaging(0.998) TCGA-21-1082-01 3 183777963 183777963 A C HTR3C Silent p.A389A 0.26 TCGA-21-1082-01 3 186522510 186522510 C A RFC4 5'UTR 0.25 TCGA-21-1082-01 3 192516149 192516149 C A MB21D2 3'UTR 0.23 TCGA-21-1082-01 3 194182881 194182881 T G ATP13A3 Missense_Mutation p.Q13H 0.15 deleterious(0.02) benign(0.158) TCGA-21-1082-01 3 195016615 195016615 C T ACAP2 Silent p.E498E 0.10 TCGA-21-1082-01 3 195511343 195511343 G T MUC4 Missense_Mutation p.P2370T 0.20 unknown(0) TCGA-21-1082-01 3 27442320 27442320 G C SLC4A7 Missense_Mutation p.L779V 0.04 tolerated(0.17) benign(0.007) TCGA-21-1082-01 3 46717777 46717777 T A ALS2CL Missense_Mutation p.E715V 0.57 deleterious(0.01) possibly_damaging(0.616) TCGA-21-1082-01 3 50382923 50382923 C T ZMYND10 Missense_Mutation p.E30K 0.67 tolerated(0.74) benign(0.001) TCGA-21-1082-01 3 52556458 52556458 C G STAB1 Nonsense_Mutation p.S2193* 0.13 TCGA-21-1082-01 3 89390085 89390085 C G EPHA3 Nonsense_Mutation p.Y278* 0.41 TCGA-21-1082-01 3 97664728 97664728 C T MINA Missense_Mutation p.E385K 0.37 tolerated(0.1) benign(0.033) TCGA-21-1082-01 4 104103969 104103969 T C CENPE Missense_Mutation p.I305V 0.04 probably_damaging(0.998) TCGA-21-1082-01 4 114274887 114274887 A G ANK2 Missense_Mutation p.R1705G 0.52 probably_damaging(0.999) TCGA-21-1082-01 4 123301251 123301251 G T ADAD1 Missense_Mutation p.Q9H 0.57 deleterious(0.01) possibly_damaging(0.873) TCGA-21-1082-01 4 149357051 149357051 G A NR3C2 Missense_Mutation p.T321M 0.55 tolerated_low_confidence(0.11) benign(0.277) TCGA-21-1082-01 4 154502640 154502640 G C KIAA0922 Missense_Mutation p.E274Q 0.42 tolerated(0.06) probably_damaging(0.984) TCGA-21-1082-01 4 187118697 187118697 G T CYP4V2 Missense_Mutation p.M205I 0.47 deleterious(0) probably_damaging(0.98) TCGA-21-1082-01 4 189020189 189020189 C A TRIML2 Missense_Mutation p.K157N 0.40 deleterious(0.02) benign(0.156) TCGA-21-1082-01 4 20568930 20568930 C G SLIT2 Nonsense_Mutation p.S924* 0.52 TCGA-21-1082-01 4 62679546 62679546 A G LPHN3 Silent p.Q405Q 0.12 TCGA-21-1082-01 4 62758451 62758451 G T LPHN3 Nonsense_Mutation p.G452* 0.46 TCGA-21-1082-01 4 66467587 66467587 C A EPHA5 Missense_Mutation p.V228L 0.56 deleterious(0.02) probably_damaging(0.97) TCGA-21-1082-01 4 81283921 81283921 C A C4orf22 Missense_Mutation p.A42D 0.48 deleterious(0) probably_damaging(0.994) TCGA-21-1082-01 4 94343994 94343994 G A GRID2 Missense_Mutation p.V474I 0.06 tolerated(0.06) possibly_damaging(0.593) TCGA-21-1082-01 4 960273 960273 C T DGKQ Missense_Mutation p.R470Q 0.04 tolerated(0.42) probably_damaging(0.912) TCGA-21-1082-01 5 131307262 131307262 C A ACSL6 Missense_Mutation p.R472L 0.43 deleterious(0) benign(0.25) TCGA-21-1082-01 5 135276730 135276730 A T FBXL21 RNA 0.49 TCGA-21-1082-01 5 137223066 137223066 G A MYOT Missense_Mutation p.E497K 0.53 deleterious(0) probably_damaging(0.998) TCGA-21-1082-01 5 13752372 13752372 G A DNAH5 Silent p.F3633F 0.04 TCGA-21-1082-01 5 13830828 13830828 C T DNAH5 Missense_Mutation p.G1980E 0.21 probably_damaging(0.982) TCGA-21-1082-01 5 140187516 140187516 G C PCDHA4 Missense_Mutation p.K248N 0.52 tolerated_low_confidence(0.15) benign(0.016) TCGA-21-1082-01 5 140230485 140230485 C G PCDHA9 Intron 0.61 TCGA-21-1082-01 5 140581038 140581038 C T PCDHB11 Missense_Mutation p.P564L 0.35 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-21-1082-01 5 176047752 176047752 T G SNCB 3'UTR 0.30 TCGA-21-1082-01 5 178634715 178634715 C A ADAMTS2 Silent p.G230G 0.34 TCGA-21-1082-01 5 228357 228357 G C SDHA Missense_Mutation p.E227Q 0.08 tolerated_low_confidence(0.17) benign(0.133) TCGA-21-1082-01 5 2749075 2749075 C A IRX2 Silent p.L249L 0.60 TCGA-21-1082-01 5 35759679 35759679 A C SPEF2 Missense_Mutation p.N1160H 0.08 deleterious(0.01) possibly_damaging(0.754) TCGA-21-1082-01 5 38463981 38463981 G A EGFLAM Missense_Mutation p.G983R 0.36 deleterious(0) probably_damaging(1) TCGA-21-1082-01 5 68805125 68805125 A G OCLN Missense_Mutation p.M70V 0.54 tolerated(0.75) benign(0.002) TCGA-21-1082-01 5 79031072 79031072 G T CMYA5 Missense_Mutation p.A2162S 0.48 benign(0.067) TCGA-21-1082-01 5 79744053 79744053 C T ZFYVE16 Missense_Mutation p.P978L 0.10 tolerated(0.14) benign(0.003) TCGA-21-1082-01 5 94027351 94027351 C G ANKRD32 Missense_Mutation p.I834M 0.38 deleterious(0) probably_damaging(1) TCGA-21-1082-01 6 109748329 109748329 C G PPIL6 Missense_Mutation p.D151H 0.24 deleterious(0.03) possibly_damaging(0.905) TCGA-21-1082-01 6 117240430 117240430 C A RFX6 Silent p.R385R 0.29 TCGA-21-1082-01 6 117248357 117248357 A G RFX6 Missense_Mutation p.I685V 0.32 tolerated_low_confidence(0.16) benign(0.001) TCGA-21-1082-01 6 129950646 129950646 C A ARHGAP18 Missense_Mutation p.G213V 0.30 tolerated(0.16) benign(0.082) TCGA-21-1082-01 6 132910194 132910194 G T TAAR5 Missense_Mutation p.P211H 0.35 deleterious(0.01) probably_damaging(1) TCGA-21-1082-01 6 132966481 132966481 G T TAAR1 Missense_Mutation p.A221E 0.32 deleterious(0.02) probably_damaging(0.927) TCGA-21-1082-01 6 138629908 138629908 G C KIAA1244 Missense_Mutation p.E1336Q 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-21-1082-01 6 157502190 157502190 C T ARID1B Nonsense_Mutation p.R1075* 0.35 TCGA-21-1082-01 6 159655400 159655400 C A FNDC1 Missense_Mutation p.P1286T 0.26 tolerated_low_confidence(0.08) unknown(0) TCGA-21-1082-01 6 162864347 162864347 C A PARK2 Missense_Mutation p.V56L 0.27 tolerated(0.81) benign(0.026) TCGA-21-1082-01 6 24502789 24502789 G A ALDH5A1 Missense_Mutation p.M131I 0.31 tolerated(0.44) benign(0.016) TCGA-21-1082-01 6 26104201 26104211 AAGGCTTGGGG - HIST1H4C Frame_Shift_Del p.L11Wfs*3 0.22 TCGA-21-1082-01 6 34985308 34985308 G T ANKS1A Missense_Mutation p.Q494H 0.30 tolerated(0.58) benign(0.01) TCGA-21-1082-01 6 35442844 35442844 C G TEAD3 Missense_Mutation p.V429L 0.33 tolerated(0.1) benign(0.002) TCGA-21-1082-01 6 42650833 42650833 G T UBR2 Nonsense_Mutation p.E1587* 0.28 TCGA-21-1082-01 6 42712806 42712806 G C TBCC Missense_Mutation p.L336V 0.31 deleterious(0.01) possibly_damaging(0.846) TCGA-21-1082-01 6 42713724 42713724 G A TBCC Nonsense_Mutation p.Q30* 0.31 TCGA-21-1082-01 6 44223067 44223067 C T SLC35B2 Silent p.L225L 0.27 TCGA-21-1082-01 6 47678539 47678539 G C GPR115 Missense_Mutation p.E73Q 0.11 tolerated(0.06) possibly_damaging(0.827) TCGA-21-1082-01 6 4952635 4952635 A T CDYL Missense_Mutation p.N490Y 0.33 deleterious(0) probably_damaging(0.949) TCGA-21-1082-01 6 71567644 71567644 A T SMAP1 Silent p.T327T 0.34 TCGA-21-1082-01 6 72947557 72947557 G T RIMS1 Missense_Mutation p.R630L 0.31 deleterious(0) possibly_damaging(0.551) TCGA-21-1082-01 6 76599845 76599845 C T MYO6 Silent p.L910L 0.05 TCGA-21-1082-01 6 79918270 79918270 C T HMGN3 Silent p.L30L 0.30 TCGA-21-1082-01 6 80741192 80741192 A G TTK Silent p.A510A 0.29 TCGA-21-1082-01 7 100369569 100369569 G T ZAN Missense_Mutation p.R1784L 0.73 unknown(0) TCGA-21-1082-01 7 107389486 107389486 G C CBLL1 Missense_Mutation p.D59H 0.64 deleterious(0.01) benign(0.281) TCGA-21-1082-01 7 116199257 116199257 C T CAV1 Silent p.Y151Y 0.48 TCGA-21-1082-01 7 121769521 121769521 C G AASS Missense_Mutation p.R94T 0.56 deleterious(0.01) benign(0.305) TCGA-21-1082-01 7 122809221 122809221 G T SLC13A1 Missense_Mutation p.N178K 0.32 deleterious(0.03) benign(0.098) TCGA-21-1082-01 7 142641766 142641766 C T KEL Nonsense_Mutation p.W459* 0.44 TCGA-21-1082-01 7 143175632 143175632 G T TAS2R41 Missense_Mutation p.D223Y 0.56 deleterious(0) probably_damaging(0.995) TCGA-21-1082-01 7 148767371 148767371 T - ZNF786 3'UTR 0.42 TCGA-21-1082-01 7 148767564 148767564 T - ZNF786 Frame_Shift_Del p.K767Rfs*10 0.42 TCGA-21-1082-01 7 156468519 156468519 G C RNF32 Missense_Mutation p.E272Q 0.52 tolerated(0.27) possibly_damaging(0.623) TCGA-21-1082-01 7 157023773 157023773 G C UBE3C Splice_Site p.X745_splice 0.04 TCGA-21-1082-01 7 30791834 30791834 C T INMT Missense_Mutation p.T23I 0.28 deleterious(0.03) probably_damaging(1) TCGA-21-1082-01 7 31378331 31378331 G A NEUROD6 Silent p.N184N 0.35 TCGA-21-1082-01 7 34697975 34697975 C A NPSR1 5'UTR 0.31 TCGA-21-1082-01 7 37956117 37956117 G T SFRP4 Missense_Mutation p.A8E 0.34 tolerated(0.18) possibly_damaging(0.726) TCGA-21-1082-01 7 39247092 39247092 G C POU6F2 Silent p.A128A 0.27 TCGA-21-1082-01 7 44578980 44578980 T C NPC1L1 Missense_Mutation p.Q339R 0.31 tolerated(1) benign(0.001) TCGA-21-1082-01 7 51092930 51092930 T G COBL Missense_Mutation p.Q1215P 0.27 tolerated(0.45) benign(0.009) TCGA-21-1082-01 7 53103931 53103931 C A POM121L12 Missense_Mutation p.S189R 0.31 tolerated(0.89) probably_damaging(0.933) TCGA-21-1082-01 7 6370409 6370409 C A FAM220A Missense_Mutation p.G126V 0.06 tolerated(0.53) unknown(0) TCGA-21-1082-01 7 64167889 64167889 A G ZNF107 Missense_Mutation p.R403G 0.32 deleterious(0.01) benign(0.086) TCGA-21-1082-01 7 66453394 66453394 C G SBDS Silent p.L239L 0.33 TCGA-21-1082-01 7 82582538 82582538 T C PCLO Silent p.T2577T 0.56 TCGA-21-1082-01 8 11301672 11301672 G T FAM167A Silent p.L83L 0.31 TCGA-21-1082-01 8 119945371 119945371 C T TNFRSF11B Missense_Mutation p.D67N 0.29 tolerated(0.07) benign(0.007) TCGA-21-1082-01 8 123966264 123966264 G C ZHX2 Nonstop_Mutation p.*838Yext*18 0.20 TCGA-21-1082-01 8 144331972 144331972 G C ZFP41 5'UTR 0.42 TCGA-21-1082-01 8 144378614 144378614 C T ZNF696 Missense_Mutation p.R257W 0.58 deleterious(0) probably_damaging(1) TCGA-21-1082-01 8 22874946 22874946 C G RHOBTB2 Silent p.S738S 0.38 TCGA-21-1082-01 8 24774854 24774854 G A NEFM Missense_Mutation p.E496K 0.32 tolerated(0.64) unknown(0) TCGA-21-1082-01 8 25747358 25747358 C A EBF2 Missense_Mutation p.D221Y 0.04 deleterious(0) probably_damaging(0.995) TCGA-21-1082-01 8 2876081 2876081 G T CSMD1 Missense_Mutation p.N2649K 0.36 probably_damaging(0.997) TCGA-21-1082-01 8 29003884 29003884 G C KIF13B Intron 0.23 TCGA-21-1082-01 8 2967784 2967784 G T CSMD1 Silent p.I2168I 0.38 TCGA-21-1082-01 8 3226868 3226868 C A CSMD1 Missense_Mutation p.G936V 0.38 probably_damaging(0.976) TCGA-21-1082-01 8 39535007 39535007 C A ADAM18 Missense_Mutation p.S528Y 0.29 tolerated(0.13) benign(0.015) TCGA-21-1082-01 8 41525874 41525874 C G ANK1 Missense_Mutation p.E1810Q 0.27 tolerated_low_confidence(0.13) benign(0.005) TCGA-21-1082-01 8 43147820 43147820 G C POTEA RNA 0.28 TCGA-21-1082-01 8 48775023 48775023 C A PRKDC Missense_Mutation p.A1943S 0.38 probably_damaging(0.936) TCGA-21-1082-01 8 51617212 51617212 C A SNTG1 Missense_Mutation p.S364Y 0.28 tolerated(0.98) benign(0.007) TCGA-21-1082-01 8 55538687 55538687 C G RP1 Missense_Mutation p.L749V 0.38 tolerated(0.08) benign(0.256) TCGA-21-1082-01 8 56715141 56715141 G C TGS1 Missense_Mutation p.D659H 0.28 deleterious(0) probably_damaging(0.999) TCGA-21-1082-01 8 66539559 66539559 T C ARMC1 Silent p.A25A 0.31 TCGA-21-1082-01 8 69351741 69351741 T - C8orf34 Frame_Shift_Del p.M112Rfs*4 0.33 TCGA-21-1082-01 8 90921898 90921898 G C OSGIN2 Missense_Mutation p.E50Q 0.06 deleterious(0.03) possibly_damaging(0.735) TCGA-21-1082-01 8 92406455 92406455 A T SLC26A7 Nonsense_Mutation p.K649* 0.29 TCGA-21-1082-01 8 99168559 99168559 C T POP1 Missense_Mutation p.S780L 0.41 tolerated(0.38) benign(0.004) TCGA-21-1082-01 9 114982501 114982501 G A PTBP3 3'UTR 0.33 TCGA-21-1082-01 9 116185731 116185731 A G C9orf43 Silent p.L203L 0.51 TCGA-21-1082-01 9 133779402 133779402 G T FIBCD1 3'UTR 0.22 TCGA-21-1082-01 9 138588643 138588643 T A SOHLH1 Missense_Mutation p.D159V 0.53 tolerated_low_confidence(0.1) benign(0.276) TCGA-21-1082-01 9 139840540 139840540 G A C8G Missense_Mutation p.R117Q 0.19 tolerated(0.09) benign(0.087) TCGA-21-1082-01 9 140777241 140777241 G T CACNA1B Missense_Mutation p.G146W 0.20 deleterious(0) possibly_damaging(0.899) TCGA-21-1082-01 9 140777242 140777242 G T CACNA1B Missense_Mutation p.G146V 0.20 tolerated(0.25) possibly_damaging(0.667) TCGA-21-1082-01 9 40715902 40715902 G A FAM74A3 RNA 0.39 TCGA-21-1082-01 9 96714488 96714488 C T BARX1 Silent p.A241A 0.42 TCGA-21-1082-01 9 990639 990639 C A DMRT3 Silent p.P351P 0.49 TCGA-21-1082-01 X 127185589 127185589 G T ACTRT1 Missense_Mutation p.S199R 0.71 tolerated(1) probably_damaging(0.96) TCGA-21-1082-01 X 130217874 130217874 C G ARHGAP36 Missense_Mutation p.I162M 0.77 tolerated(0.26) benign(0.01) TCGA-21-1082-01 X 130220555 130220555 G T ARHGAP36 Nonsense_Mutation p.E468* 0.63 TCGA-21-1082-01 X 149014121 149014122 TG - MAGEA8 3'UTR 0.24 TCGA-21-1082-01 X 15287958 15287958 G C ASB9 Silent p.P13P 0.62 TCGA-21-1082-01 X 155004318 155004318 G T SPRY3 Missense_Mutation p.C262F 0.58 deleterious(0.01) probably_damaging(1) TCGA-21-1082-01 X 16170699 16170699 G C GRPR Missense_Mutation p.K362N 0.63 deleterious(0.01) possibly_damaging(0.587) TCGA-21-1082-01 X 29973963 29973963 C A IL1RAPL1 3'UTR 0.83 TCGA-21-1082-01 X 34149722 34149722 G - FAM47A Frame_Shift_Del p.P225Rfs*41 0.35 TCGA-21-1082-01 X 34150297 34150297 G C FAM47A Missense_Mutation p.C33W 0.20 deleterious(0.04) benign(0.226) TCGA-21-1082-01 X 48980045 48980045 G A GPKOW Missense_Mutation p.P10S 0.55 tolerated(0.51) benign(0.013) TCGA-21-1082-01 X 50052346 50052346 G A CCNB3 Missense_Mutation p.G393R 0.64 tolerated(0.45) benign(0.247) TCGA-21-1082-01 X 69460008 69460008 C A AWAT1 Silent p.P285P 0.73 TCGA-21-1082-01 X 69460009 69460009 C T AWAT1 Nonsense_Mutation p.Q286* 0.76 TCGA-21-1082-01 X 73063828 73063828 C A XIST RNA 0.71 TCGA-21-1082-01 X 77913341 77913341 C G ZCCHC5 Missense_Mutation p.E193Q 0.59 tolerated(0.06) benign(0.196) TCGA-21-1082-01 Y 6953942 6953942 G C TBL1Y Missense_Mutation p.E361Q 0.55 deleterious(0) probably_damaging(0.999) TCGA-21-1083-01 10 101969543 101969543 C A CHUK Missense_Mutation p.V313L 0.72 tolerated(0.27) benign(0.098) TCGA-21-1083-01 10 108427531 108427531 C A SORCS1 Missense_Mutation p.G740V 0.33 deleterious(0) probably_damaging(0.935) TCGA-21-1083-01 10 121196229 121196229 G T GRK5 Missense_Mutation p.G269C 0.51 deleterious(0) probably_damaging(0.999) TCGA-21-1083-01 10 123247516 123247516 T C FGFR2 Missense_Mutation p.K660E 0.52 deleterious(0) benign(0.123) TCGA-21-1083-01 10 126515200 126515200 C T FAM175B Nonsense_Mutation p.Q102* 0.59 TCGA-21-1083-01 10 13264049 13264049 G C UCMA 3'UTR 0.40 TCGA-21-1083-01 10 134179015 134179015 A G LRRC27 Silent p.P459P 0.49 TCGA-21-1083-01 10 135237186 135237186 C T SPRN 5'UTR 0.20 TCGA-21-1083-01 10 17126404 17126404 C A CUBN Nonsense_Mutation p.E723* 0.35 TCGA-21-1083-01 10 17271930 17271930 G T VIM Missense_Mutation p.R170L 0.23 deleterious(0) possibly_damaging(0.618) TCGA-21-1083-01 10 17363039 17363039 G T ST8SIA6 Silent p.P345P 0.31 TCGA-21-1083-01 10 17632287 17632287 T A PTPLA 3'UTR 0.35 TCGA-21-1083-01 10 18827205 18827205 C A CACNB2 Missense_Mutation p.P467T 0.36 tolerated(0.13) benign(0.001) TCGA-21-1083-01 10 22826176 22826176 T A PIP4K2A Missense_Mutation p.Q392L 0.43 deleterious(0.01) benign(0.33) TCGA-21-1083-01 10 26559663 26559663 A G GAD2 Missense_Mutation p.Y357C 0.36 deleterious(0) possibly_damaging(0.901) TCGA-21-1083-01 10 28274036 28274036 G A ARMC4 Missense_Mutation p.P163S 0.26 tolerated(0.37) benign(0.002) TCGA-21-1083-01 10 28274100 28274100 A T ARMC4 Nonsense_Mutation p.Y141* 0.30 TCGA-21-1083-01 10 38407130 38407130 G A ZNF37A Missense_Mutation p.G351R 0.38 deleterious(0) probably_damaging(1) TCGA-21-1083-01 10 43015717 43015717 T G ZNF37BP RNA 0.35 TCGA-21-1083-01 10 43882711 43882711 C G HNRNPF Missense_Mutation p.G208R 0.29 deleterious(0.03) possibly_damaging(0.482) TCGA-21-1083-01 10 45798993 45798993 C A OR13A1 Missense_Mutation p.G293V 0.39 deleterious(0) possibly_damaging(0.716) TCGA-21-1083-01 10 49687655 49687655 G T ARHGAP22 Missense_Mutation p.H159N 0.22 tolerated_low_confidence(0.41) benign(0.023) TCGA-21-1083-01 10 50121487 50121487 G T LRRC18 Silent p.P238P 0.37 TCGA-21-1083-01 10 50863149 50863149 G A CHAT Missense_Mutation p.R548Q 0.34 tolerated(0.3) benign(0.004) TCGA-21-1083-01 10 51769187 51769187 G T AGAP6 Missense_Mutation p.W434C 0.21 deleterious(0) probably_damaging(1) TCGA-21-1083-01 10 52575937 52575937 G T A1CF Missense_Mutation p.Q332K 0.37 tolerated(0.17) benign(0.339) TCGA-21-1083-01 10 61011414 61011414 G A FAM13C Nonsense_Mutation p.R519* 0.38 TCGA-21-1083-01 10 70451467 70451467 C T TET1 Nonsense_Mutation p.Q2103* 0.16 TCGA-21-1083-01 10 72026039 72026039 G C NPFFR1 Missense_Mutation p.T39S 0.33 tolerated(1) benign(0) TCGA-21-1083-01 10 7618850 7618850 G T ITIH5 Missense_Mutation p.A515E 0.34 deleterious(0) probably_damaging(0.999) TCGA-21-1083-01 10 7774333 7774333 C A ITIH2 Silent p.A560A 0.34 TCGA-21-1083-01 10 79603344 79603344 C G DLG5 Missense_Mutation p.A329P 0.31 deleterious(0.01) benign(0.353) TCGA-21-1083-01 10 85992156 85992156 C G LRIT1 Missense_Mutation p.G467R 0.30 deleterious(0) probably_damaging(1) TCGA-21-1083-01 10 85993903 85993903 C A LRIT1 Missense_Mutation p.R274L 0.34 deleterious(0) probably_damaging(0.995) TCGA-21-1083-01 10 89711876 89711876 G A PTEN Missense_Mutation p.G165E 0.33 deleterious(0) probably_damaging(0.994) TCGA-21-1083-01 10 93008453 93008453 G C PCGF5 Missense_Mutation p.K99N 0.29 tolerated(0.13) benign(0.003) TCGA-21-1083-01 10 93572796 93572796 G T TNKS2 Missense_Mutation p.A86S 0.31 tolerated(0.06) probably_damaging(0.991) TCGA-21-1083-01 10 94111084 94111084 G A MARCH5 3'UTR 0.47 TCGA-21-1083-01 10 98170217 98170217 G - TLL2 Frame_Shift_Del p.L355Cfs*37 0.48 TCGA-21-1083-01 10 98411045 98411045 G C PIK3AP1 Silent p.L316L 0.53 TCGA-21-1083-01 11 100221585 100221585 G T CNTN5 Missense_Mutation p.R1061S 0.15 deleterious(0) probably_damaging(0.996) TCGA-21-1083-01 11 100999497 100999497 C A PGR Missense_Mutation p.S102I 0.52 deleterious_low_confidence(0) benign(0.037) TCGA-21-1083-01 11 102819851 102819851 C T MMP13 Silent p.A318A 0.04 TCGA-21-1083-01 11 103058109 103058109 C G DYNC2H1 Missense_Mutation p.Q2312E 0.20 benign(0.002) TCGA-21-1083-01 11 113813885 113813885 C A HTR3B Missense_Mutation p.P293Q 0.21 deleterious(0) probably_damaging(1) TCGA-21-1083-01 11 117329618 117329618 G C DSCAML1 Silent p.G1200G 0.26 TCGA-21-1083-01 11 120008682 120008682 G C TRIM29 Missense_Mutation p.R20G 0.23 deleterious_low_confidence(0.01) benign(0.113) TCGA-21-1083-01 11 12229583 12229583 A G MICAL2 Silent p.L162L 0.55 TCGA-21-1083-01 11 123756008 123756008 C A TMEM225 Missense_Mutation p.R42I 0.14 tolerated(0.06) benign(0.051) TCGA-21-1083-01 11 123813721 123813721 G - OR6T1 Frame_Shift_Del p.V276Sfs*2 0.36 TCGA-21-1083-01 11 123909273 123909273 C T OR10G7 Missense_Mutation p.G146S 0.51 tolerated(0.18) benign(0.014) TCGA-21-1083-01 11 124294222 124294222 G T OR8B4 Silent p.P182P 0.52 TCGA-21-1083-01 11 124310403 124310403 A G OR8B8 Silent p.Y193Y 0.46 TCGA-21-1083-01 11 124744747 124744747 C A ROBO3 Missense_Mutation p.A672D 0.25 tolerated(0.09) possibly_damaging(0.653) TCGA-21-1083-01 11 124756588 124756589 AG T ROBO4 Frame_Shift_Del p.L856Cfs*18 0.16 TCGA-21-1083-01 11 124757058 124757058 G - ROBO4 Frame_Shift_Del p.I751Sfs*43 0.26 TCGA-21-1083-01 11 126126602 126126602 G C FAM118B Silent p.R279R 0.56 TCGA-21-1083-01 11 128993372 128993372 T C ARHGAP32 Missense_Mutation p.H124R 0.55 deleterious(0) probably_damaging(0.996) TCGA-21-1083-01 11 132527170 132527170 C A OPCML Missense_Mutation p.R71L 0.14 deleterious(0) probably_damaging(0.999) TCGA-21-1083-01 11 16838443 16838443 T A PLEKHA7 Silent p.P590P 0.55 TCGA-21-1083-01 11 18231513 18231513 C T RP11-113D6.10 Missense_Mutation p.T100I 0.60 deleterious(0.02) probably_damaging(0.971) TCGA-21-1083-01 11 18955771 18955771 T A MRGPRX1 Missense_Mutation p.L187F 0.21 deleterious(0.03) possibly_damaging(0.464) TCGA-21-1083-01 11 44265911 44265911 G A EXT2 3'UTR 0.60 TCGA-21-1083-01 11 4674710 4674710 C A OR51E1 Silent p.P318P 0.61 TCGA-21-1083-01 11 50003549 50003549 C A OR4C12 Missense_Mutation p.W163C 0.47 tolerated_low_confidence(0.13) probably_damaging(0.963) TCGA-21-1083-01 11 51515992 51515992 C A OR4C46 Silent p.T237T 0.42 TCGA-21-1083-01 11 5364360 5364360 G T OR51B5 Missense_Mutation p.S132Y 0.49 deleterious(0) possibly_damaging(0.664) TCGA-21-1083-01 11 55065478 55065478 C A TRIM51HP RNA 0.26 TCGA-21-1083-01 11 55135441 55135441 G T OR4A15 Nonsense_Mutation p.E28* 0.38 TCGA-21-1083-01 11 55135996 55135996 T A OR4A15 Missense_Mutation p.L213M 0.40 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-21-1083-01 11 55371511 55371511 G T OR4C11 Silent p.L113L 0.43 TCGA-21-1083-01 11 55541145 55541145 G T OR5D13 Missense_Mutation p.V78L 0.47 deleterious(0.01) benign(0.02) TCGA-21-1083-01 11 55579004 55579004 C A OR5L1 Missense_Mutation p.P21H 0.30 deleterious(0) possibly_damaging(0.895) TCGA-21-1083-01 11 55653024 55653024 C A TRIM51 Nonsense_Mutation p.Y40* 0.21 TCGA-21-1083-01 11 55653025 55653025 C A TRIM51 Missense_Mutation p.L41I 0.20 tolerated(0.26) benign(0.208) TCGA-21-1083-01 11 55798290 55798290 T C OR5AS1 Silent p.Y132Y 0.23 TCGA-21-1083-01 11 55872582 55872582 G A OR8H2 Missense_Mutation p.E22K 0.43 tolerated(0.3) benign(0.077) TCGA-21-1083-01 11 56020155 56020155 C G OR5T3 Silent p.L160L 0.46 TCGA-21-1083-01 11 56128352 56128352 C A OR8J1 Silent p.S210S 0.18 TCGA-21-1083-01 11 56237370 56237370 C T OR5M3 Missense_Mutation p.G202S 0.20 deleterious(0.05) probably_damaging(0.99) TCGA-21-1083-01 11 58377497 58377497 G T ZFP91 Missense_Mutation p.D189Y 0.41 deleterious_low_confidence(0) possibly_damaging(0.87) TCGA-21-1083-01 11 60070105 60070105 G A MS4A4A Missense_Mutation p.S154N 0.43 tolerated(0.1) benign(0.366) TCGA-21-1083-01 11 60482906 60482906 C T MS4A8 3'UTR 0.29 TCGA-21-1083-01 11 61089845 61089845 C T DDB1 Missense_Mutation p.A349T 0.39 deleterious(0.04) benign(0) TCGA-21-1083-01 11 64056850 64056850 G A GPR137 3'UTR 0.26 TCGA-21-1083-01 11 64084733 64084733 C G TRMT112 Intron 0.22 TCGA-21-1083-01 11 64537022 64537022 T A SF1 Missense_Mutation p.K305I 0.43 deleterious(0) probably_damaging(0.995) TCGA-21-1083-01 11 6478143 6478143 G A TRIM3 Silent p.R271R 0.51 TCGA-21-1083-01 11 65268744 65268744 C T MALAT1 RNA 0.27 TCGA-21-1083-01 11 66391831 66391831 G - RBM14 Frame_Shift_Del p.D163Tfs*68 0.25 TCGA-21-1083-01 11 68475872 68475872 C A MTL5 Missense_Mutation p.K477N 0.24 tolerated(0.3) benign(0.035) TCGA-21-1083-01 11 70319416 70319416 C A SHANK2 Missense_Mutation p.G1704V 0.13 tolerated(0.33) probably_damaging(0.953) TCGA-21-1083-01 11 71850813 71850813 G T FOLR3 Missense_Mutation p.A268S 0.19 deleterious(0.02) possibly_damaging(0.574) TCGA-21-1083-01 11 76813989 76813989 G T OMP Missense_Mutation p.R35L 0.45 deleterious_low_confidence(0.05) benign(0.413) TCGA-21-1083-01 11 76892997 76892997 G A MYO7A Missense_Mutation p.D969N 0.12 tolerated(0.12) benign(0.316) TCGA-21-1083-01 11 810332 810332 A T RPLP2 Missense_Mutation p.E33V 0.50 deleterious(0) possibly_damaging(0.894) TCGA-21-1083-01 11 89073234 89073234 G T NOX4 Missense_Mutation p.N481K 0.14 tolerated(0.29) benign(0.008) TCGA-21-1083-01 11 89537320 89537320 C A TRIM49 Silent p.V106V 0.11 TCGA-21-1083-01 11 92086607 92086607 T C FAT3 Silent p.Y443Y 0.25 TCGA-21-1083-01 11 92715526 92715526 G A MTNR1B 3'UTR 0.21 TCGA-21-1083-01 12 100813760 100813760 G A SLC17A8 Silent p.E531E 0.48 TCGA-21-1083-01 12 101442178 101442178 G C ANO4 Missense_Mutation p.W402C 0.30 deleterious(0) probably_damaging(1) TCGA-21-1083-01 12 101504228 101504228 A T ANO4 Silent p.L697L 0.27 TCGA-21-1083-01 12 109017704 109017704 G T SELPLG Missense_Mutation p.A143E 0.35 deleterious(0.04) unknown(0) TCGA-21-1083-01 12 109613964 109613964 G C ACACB Missense_Mutation p.E445Q 0.32 tolerated(0.18) benign(0.07) TCGA-21-1083-01 12 110628812 110628812 G C IFT81 Missense_Mutation p.D476H 0.30 deleterious(0) probably_damaging(0.994) TCGA-21-1083-01 12 112717175 112717175 C A HECTD4 Missense_Mutation p.G371V 0.33 possibly_damaging(0.687) TCGA-21-1083-01 12 113384612 113384612 T C OAS3 Missense_Mutation p.I234T 0.34 deleterious(0) possibly_damaging(0.877) TCGA-21-1083-01 12 113538461 113538461 G C RASAL1 Missense_Mutation p.N751K 0.30 tolerated(0.7) benign(0.062) TCGA-21-1083-01 12 113629769 113629769 C A RITA1 3'UTR 0.32 TCGA-21-1083-01 12 129559103 129559103 C T TMEM132D Missense_Mutation p.D873N 0.40 tolerated(0.12) benign(0.099) TCGA-21-1083-01 12 130184429 130184429 G T TMEM132D Silent p.T298T 0.27 TCGA-21-1083-01 12 130184430 130184430 G T TMEM132D Missense_Mutation p.T298N 0.26 deleterious(0.03) benign(0.091) TCGA-21-1083-01 12 132334463 132334463 G T MMP17 Missense_Mutation p.D441Y 0.24 deleterious(0.03) probably_damaging(0.979) TCGA-21-1083-01 12 132334464 132334464 A G MMP17 Missense_Mutation p.D441G 0.23 tolerated(0.87) probably_damaging(0.951) TCGA-21-1083-01 12 14610206 14610206 C - ATF7IP Frame_Shift_Del p.Q714Kfs*4 0.33 TCGA-21-1083-01 12 21355436 21355436 A G SLCO1B1 Missense_Mutation p.I383V 0.45 tolerated(0.07) benign(0.013) TCGA-21-1083-01 12 21355549 21355549 C A SLCO1B1 Silent p.S420S 0.32 TCGA-21-1083-01 12 21918615 21918615 C A KCNJ8 3'UTR 0.38 TCGA-21-1083-01 12 2786348 2786348 T C CACNA1C Silent p.L1687L 0.31 TCGA-21-1083-01 12 307121 307121 G - SLC6A12 Frame_Shift_Del p.Q299Rfs*4 0.33 TCGA-21-1083-01 12 30843434 30843434 C G IPO8 Missense_Mutation p.Q54H 0.37 deleterious(0) probably_damaging(0.976) TCGA-21-1083-01 12 31244712 31244712 C A DDX11 Silent p.I383I 0.16 TCGA-21-1083-01 12 43777734 43777734 C T ADAMTS20 Missense_Mutation p.C1500Y 0.34 deleterious(0) probably_damaging(0.987) TCGA-21-1083-01 12 4479534 4479534 C A FGF23 Missense_Mutation p.C244F 0.27 deleterious_low_confidence(0) possibly_damaging(0.819) TCGA-21-1083-01 12 46320039 46320039 C T SCAF11 Missense_Mutation p.A1149T 0.37 deleterious(0) probably_damaging(1) TCGA-21-1083-01 12 48134590 48134590 T C RAPGEF3 Missense_Mutation p.Y689C 0.40 deleterious(0) probably_damaging(0.928) TCGA-21-1083-01 12 48376902 48376902 C A COL2A1 Nonsense_Mutation p.G690* 0.34 TCGA-21-1083-01 12 48596445 48596445 G C OR10AD1 Missense_Mutation p.P211A 0.27 deleterious(0) possibly_damaging(0.827) TCGA-21-1083-01 12 4870238 4870238 C T GALNT8 Silent p.L430L 0.33 TCGA-21-1083-01 12 49050514 49050514 C T KANSL2 Intron 0.33 TCGA-21-1083-01 12 49437746 49437746 C A KMT2D Nonsense_Mutation p.E1742* 0.62 TCGA-21-1083-01 12 49449059 49449059 C T KMT2D Missense_Mutation p.A17T 0.62 unknown(0) TCGA-21-1083-01 12 52283267 52283267 G T ANKRD33 Splice_Site p.X213_splice 0.36 TCGA-21-1083-01 12 52648095 52648095 G T KRT121P RNA 0.34 TCGA-21-1083-01 12 52709801 52709801 G T KRT83 Missense_Mutation p.L380M 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-21-1083-01 12 53086375 53086375 C A KRT77 Missense_Mutation p.Q419H 0.40 tolerated(0.41) possibly_damaging(0.677) TCGA-21-1083-01 12 53200748 53200748 T A KRT4 3'UTR 0.33 TCGA-21-1083-01 12 53696880 53696880 G T C12orf10 Missense_Mutation p.S131I 0.34 deleterious(0) probably_damaging(0.991) TCGA-21-1083-01 12 54379053 54379053 C G HOXC10 Missense_Mutation p.P4A 0.27 deleterious(0.02) benign(0.191) TCGA-21-1083-01 12 54645906 54645906 G A CBX5 Silent p.P81P 0.30 TCGA-21-1083-01 12 56435862 56435862 G A RPS26 5'UTR 0.43 TCGA-21-1083-01 12 57323177 57323177 T G SDR9C7 Missense_Mutation p.I241L 0.34 tolerated(0.32) benign(0.001) TCGA-21-1083-01 12 57501436 57501436 T C STAT6 Silent p.G69G 0.32 TCGA-21-1083-01 12 57985018 57985018 G A PIP4K2C 5'Flank 0.39 TCGA-21-1083-01 12 6602030 6602030 A T MRPL51 Missense_Mutation p.L63Q 0.05 deleterious(0) probably_damaging(1) TCGA-21-1083-01 12 69051142 69051142 A G RAP1B Intron 0.44 TCGA-21-1083-01 12 70760802 70760802 T C KCNMB4 Silent p.S96S 0.34 TCGA-21-1083-01 12 72026778 72026778 C A ZFC3H1 Missense_Mutation p.R902L 0.32 deleterious(0) probably_damaging(0.992) TCGA-21-1083-01 12 72366421 72366421 C T TPH2 Missense_Mutation p.P244L 0.33 deleterious(0) possibly_damaging(0.811) TCGA-21-1083-01 12 76791584 76791584 C G OSBPL8 Missense_Mutation p.V188L 0.31 deleterious(0.02) probably_damaging(0.996) TCGA-21-1083-01 12 78574723 78574723 C G NAV3 Missense_Mutation p.R1842G 0.25 tolerated(0.13) probably_damaging(0.999) TCGA-21-1083-01 12 79685854 79685854 G T SYT1 Nonsense_Mutation p.E140* 0.29 TCGA-21-1083-01 12 79689932 79689932 G A SYT1 Silent p.L186L 0.30 TCGA-21-1083-01 12 81102765 81102765 C A MYF6 3'UTR 0.34 TCGA-21-1083-01 12 88391848 88391848 T A C12orf50 Missense_Mutation p.N85Y 0.28 deleterious(0) probably_damaging(0.957) TCGA-21-1083-01 12 95656772 95656772 C T VEZT Missense_Mutation p.P117S 0.37 deleterious(0) possibly_damaging(0.682) TCGA-21-1083-01 12 99640327 99640327 G C ANKS1B Nonsense_Mutation p.S691* 0.34 TCGA-21-1083-01 13 109753212 109753212 C G MYO16 Missense_Mutation p.Q1117E 0.21 deleterious(0.04) benign(0.411) TCGA-21-1083-01 13 113333731 113333731 G T C13orf35 Missense_Mutation p.C13F 0.28 tolerated_low_confidence(0.26) possibly_damaging(0.506) TCGA-21-1083-01 13 113793675 113793675 C G F10 Silent p.G87G 0.37 TCGA-21-1083-01 13 114774866 114774866 C G RASA3 Missense_Mutation p.K555N 0.23 deleterious(0) possibly_damaging(0.511) TCGA-21-1083-01 13 23908387 23908387 C G SACS Missense_Mutation p.D3210H 0.10 possibly_damaging(0.754) TCGA-21-1083-01 13 25262591 25262591 G - ATP12A Frame_Shift_Del p.G122Afs*21 0.27 TCGA-21-1083-01 13 28862127 28862127 G C PAN3 Missense_Mutation p.Q797H 0.36 tolerated(0.1) benign(0.07) TCGA-21-1083-01 13 32376320 32376320 A T RXFP2 Silent p.P681P 0.23 TCGA-21-1083-01 13 32783240 32783240 G T FRY Silent p.T1423T 0.18 TCGA-21-1083-01 13 33017854 33017854 T C N4BP2L2 Missense_Mutation p.T274A 0.31 tolerated(0.38) benign(0.007) TCGA-21-1083-01 13 36125136 36125136 G T NBEA Missense_Mutation p.G2258V 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-21-1083-01 13 36223890 36223890 G T NBEA Silent p.V2602V 0.38 TCGA-21-1083-01 13 39422681 39422681 G A FREM2 Missense_Mutation p.D2085N 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-21-1083-01 13 42729480 42729480 G T DGKH Missense_Mutation p.M146I 0.30 deleterious(0) benign(0.053) TCGA-21-1083-01 13 42729481 42729481 G T DGKH Nonsense_Mutation p.E147* 0.30 TCGA-21-1083-01 13 45563576 45563576 C T NUFIP1 5'UTR 0.47 TCGA-21-1083-01 13 53307420 53307420 G A LECT1 Silent p.N96N 0.24 TCGA-21-1083-01 13 53608505 53608505 C A OLFM4 Missense_Mutation p.S76Y 0.23 deleterious(0.04) possibly_damaging(0.655) TCGA-21-1083-01 13 70413176 70413176 G C KLHL1 Missense_Mutation p.P449R 0.37 deleterious(0.01) possibly_damaging(0.773) TCGA-21-1083-01 13 73348083 73348083 C T DIS3 Splice_Site p.X367_splice 0.29 TCGA-21-1083-01 13 76430676 76430676 C A LMO7 Missense_Mutation p.P1333T 0.23 deleterious_low_confidence(0.04) benign(0.055) TCGA-21-1083-01 13 92345740 92345740 C T GPC5 Nonsense_Mutation p.Q209* 0.15 TCGA-21-1083-01 14 101491923 101491923 G C MIR1197 RNA 0.45 TCGA-21-1083-01 14 105201412 105201412 A C ADSSL1 Missense_Mutation p.H126P 0.54 deleterious(0) probably_damaging(0.998) TCGA-21-1083-01 14 105965154 105965154 G T C14orf80 Missense_Mutation p.R384S 0.47 tolerated(0.14) benign(0.205) TCGA-21-1083-01 14 19553745 19553745 G T POTEG Missense_Mutation p.R110M 0.11 deleterious(0) benign(0.322) TCGA-21-1083-01 14 20344556 20344556 C G OR4K2 Missense_Mutation p.L44V 0.31 tolerated(0.06) benign(0.03) TCGA-21-1083-01 14 20344657 20344659 CAC AA OR4K2 Frame_Shift_Del p.P79Qfs*3 0.12 TCGA-21-1083-01 14 20483246 20483246 A T OR4K14 Missense_Mutation p.V36E 0.49 deleterious(0.01) benign(0.258) TCGA-21-1083-01 14 20665680 20665680 G T OR11G2 Missense_Mutation p.Q62H 0.56 deleterious(0.01) benign(0.039) TCGA-21-1083-01 14 21424098 21424098 C A RNASE2 Silent p.V56V 0.61 TCGA-21-1083-01 14 22321003 22321003 G A TRAV8-3 Nonsense_Mutation p.W54* 0.50 TCGA-21-1083-01 14 22321004 22321004 G T TRAV8-3 Missense_Mutation p.W54C 0.51 deleterious(0) probably_damaging(1) TCGA-21-1083-01 14 23869479 23869479 C A MYH6 Missense_Mutation p.D523Y 0.49 deleterious(0) possibly_damaging(0.905) TCGA-21-1083-01 14 30046330 30046330 C A PRKD1 3'UTR 0.45 TCGA-21-1083-01 14 44973753 44973753 A C FSCB Missense_Mutation p.V813G 0.33 deleterious(0.01) unknown(0) TCGA-21-1083-01 14 63416913 63416913 C T KCNH5 Missense_Mutation p.G436E 0.50 deleterious(0) probably_damaging(0.994) TCGA-21-1083-01 14 65289733 65289733 T C SPTB Missense_Mutation p.D27G 0.55 deleterious(0.03) possibly_damaging(0.69) TCGA-21-1083-01 14 73577654 73577654 A T RBM25 Missense_Mutation p.E603V 0.65 benign(0.403) TCGA-21-1083-01 14 81557446 81557446 T A TSHR Silent p.P142P 0.42 TCGA-21-1083-01 14 86089318 86089318 C A FLRT2 Missense_Mutation p.S487Y 0.51 deleterious(0) probably_damaging(0.999) TCGA-21-1083-01 14 88416215 88416215 G A GALC Missense_Mutation p.L438F 0.51 tolerated(0.38) benign(0.022) TCGA-21-1083-01 14 88652419 88652419 G T KCNK10 Missense_Mutation p.S364R 0.57 deleterious(0) possibly_damaging(0.825) TCGA-21-1083-01 15 102358675 102358675 G A OR4F15 Missense_Mutation p.G96R 0.62 deleterious_low_confidence(0) possibly_damaging(0.881) TCGA-21-1083-01 15 24923302 24923302 C G NPAP1 Missense_Mutation p.P763R 0.56 tolerated(0.18) benign(0.065) TCGA-21-1083-01 15 25425585 25425585 G T SNORD115-6 5'Flank 0.61 TCGA-21-1083-01 15 31355372 31355372 C T TRPM1 Missense_Mutation p.G322E 0.57 deleterious(0) probably_damaging(0.999) TCGA-21-1083-01 15 31360084 31360084 G C TRPM1 Missense_Mutation p.T181R 0.55 deleterious(0) probably_damaging(0.991) TCGA-21-1083-01 15 33872208 33872208 C T RYR3 Silent p.L434L 0.51 TCGA-21-1083-01 15 33928599 33928599 G T RYR3 Missense_Mutation p.S1135I 0.55 possibly_damaging(0.828) TCGA-21-1083-01 15 33928601 33928601 G T RYR3 Missense_Mutation p.G1136W 0.55 probably_damaging(0.928) TCGA-21-1083-01 15 38990502 38990502 G T C15orf53 Missense_Mutation p.W99L 0.61 deleterious_low_confidence(0) benign(0) TCGA-21-1083-01 15 41222142 41222142 G C DLL4 Missense_Mutation p.R55P 0.62 deleterious(0) probably_damaging(1) TCGA-21-1083-01 15 44067521 44067521 G T ELL3 Silent p.R210R 0.62 TCGA-21-1083-01 15 52668630 52668630 T A MYO5A Silent p.R778R 0.70 TCGA-21-1083-01 15 63634274 63634274 G C CA12 Nonsense_Mutation p.S151* 0.64 TCGA-21-1083-01 15 64446786 64446786 C T SNX22 3'UTR 0.66 TCGA-21-1083-01 15 74637446 74637446 C T CYP11A1 Silent p.K188K 0.70 TCGA-21-1083-01 15 79083020 79083020 C A ADAMTS7 Silent p.L340L 0.70 TCGA-21-1083-01 15 85230944 85230944 C G SEC11A Missense_Mutation p.D75H 0.23 tolerated(0.07) possibly_damaging(0.859) TCGA-21-1083-01 15 85326704 85326704 A C ZNF592 Silent p.S266S 0.66 TCGA-21-1083-01 16 12897609 12897609 C T CPPED1 Missense_Mutation p.V9I 0.35 tolerated(0.49) benign(0.009) TCGA-21-1083-01 16 1560946 1560946 C T IFT140 Silent p.%3D 0.47 TCGA-21-1083-01 16 16306080 16306080 T G ABCC6 Silent p.A208A 0.30 TCGA-21-1083-01 16 1706147 1706147 C T CRAMP1L Silent p.C463C 0.50 TCGA-21-1083-01 16 18902242 18902242 A G SMG1 Missense_Mutation p.V184A 0.27 tolerated(0.28) benign(0.112) TCGA-21-1083-01 16 19127000 19127000 T C ITPRIPL2 Missense_Mutation p.V406A 0.31 tolerated(0.73) benign(0.132) TCGA-21-1083-01 16 19184762 19184762 C G SYT17 Missense_Mutation p.S15C 0.31 deleterious_low_confidence(0) benign(0.308) TCGA-21-1083-01 16 19184843 19184843 C G SYT17 Nonsense_Mutation p.S42* 0.30 TCGA-21-1083-01 16 20386185 20386185 G T PDILT Missense_Mutation p.R214S 0.37 tolerated(0.25) possibly_damaging(0.591) TCGA-21-1083-01 16 21747632 21747632 C A OTOA Silent p.P784P 0.32 TCGA-21-1083-01 16 22447062 22447062 C A RRN3P3 RNA 0.35 TCGA-21-1083-01 16 24358136 24358136 T A CACNG3 Missense_Mutation p.L98Q 0.30 deleterious(0) probably_damaging(0.988) TCGA-21-1083-01 16 24373168 24373168 G C CACNG3 Missense_Mutation p.R311P 0.39 deleterious(0) probably_damaging(0.999) TCGA-21-1083-01 16 26147305 26147305 C A HS3ST4 Silent p.A369A 0.25 TCGA-21-1083-01 16 27221903 27221903 G T KDM8 Missense_Mutation p.R191S 0.32 tolerated(0.26) benign(0.01) TCGA-21-1083-01 16 27374972 27374972 G A IL4R Missense_Mutation p.G767S 0.34 tolerated(0.31) benign(0.074) TCGA-21-1083-01 16 27375190 27375190 T C IL4R 3'UTR 0.32 TCGA-21-1083-01 16 27781206 27781206 G C KIAA0556 Missense_Mutation p.D1334H 0.36 deleterious(0) probably_damaging(0.999) TCGA-21-1083-01 16 28913536 28913536 G C ATP2A1 Missense_Mutation p.E785Q 0.36 deleterious(0) possibly_damaging(0.659) TCGA-21-1083-01 16 29883560 29883560 T C SEZ6L2 Missense_Mutation p.Y884C 0.35 deleterious(0) probably_damaging(0.946) TCGA-21-1083-01 16 29974855 29974855 G T TMEM219 Missense_Mutation p.R100S 0.28 tolerated(0.15) benign(0.144) TCGA-21-1083-01 16 30037951 30037951 C A FAM57B Silent p.L141L 0.32 TCGA-21-1083-01 16 3063328 3063328 C A CLDN9 5'UTR 0.39 TCGA-21-1083-01 16 3613785 3613785 G A NLRC3 Missense_Mutation p.R432C 0.32 deleterious(0) possibly_damaging(0.586) TCGA-21-1083-01 16 55601436 55601436 G C CAPNS2 3'UTR 0.53 TCGA-21-1083-01 16 55907931 55907931 G T CES5A Missense_Mutation p.P60Q 0.56 deleterious(0) probably_damaging(0.979) TCGA-21-1083-01 16 58590885 58590885 C A CNOT1 Missense_Mutation p.G782V 0.55 tolerated(0.06) benign(0.008) TCGA-21-1083-01 16 67181043 67181043 C T C16orf70 3'UTR 0.60 TCGA-21-1083-01 16 67327782 67327782 G T KCTD19 Missense_Mutation p.P628H 0.68 deleterious_low_confidence(0.02) probably_damaging(0.931) TCGA-21-1083-01 16 67918045 67918045 C T EDC4 Silent p.L1400L 0.58 TCGA-21-1083-01 16 67918742 67918742 C A NRN1L 5'UTR 0.44 TCGA-21-1083-01 16 67919908 67919908 C G NRN1L Missense_Mutation p.Q82E 0.44 tolerated(1) benign(0.07) TCGA-21-1083-01 16 75238111 75238111 G T CTRB2 Missense_Mutation p.A247D 0.51 deleterious(0) probably_damaging(0.971) TCGA-21-1083-01 16 77229467 77229467 A T MON1B Missense_Mutation p.E444V 0.46 deleterious(0) probably_damaging(0.958) TCGA-21-1083-01 16 81295772 81295772 G C BCMO1 Missense_Mutation p.D119H 0.56 deleterious(0.01) probably_damaging(0.984) TCGA-21-1083-01 16 83999319 83999319 G A OSGIN1 Missense_Mutation p.E381K 0.53 tolerated(0.45) benign(0.001) TCGA-21-1083-01 17 10216536 10216536 G T MYH13 Missense_Mutation p.Q1374K 0.53 tolerated(0.05) probably_damaging(0.981) TCGA-21-1083-01 17 10216623 10216623 C A MYH13 Missense_Mutation p.D1345Y 0.52 deleterious(0) benign(0.394) TCGA-21-1083-01 17 10366675 10366675 G T MYH4 Missense_Mutation p.A262D 0.42 deleterious(0) probably_damaging(0.984) TCGA-21-1083-01 17 19318629 19318629 C A RNF112 Missense_Mutation p.P443T 0.61 tolerated(0.39) possibly_damaging(0.554) TCGA-21-1083-01 17 21319775 21319775 C A KCNJ12 Missense_Mutation p.S374Y 0.30 deleterious(0.03) probably_damaging(0.925) TCGA-21-1083-01 17 25950491 25950491 A T KSR1 3'UTR 0.42 TCGA-21-1083-01 17 26864355 26864355 C - FOXN1 Frame_Shift_Del p.Y617Tfs*59 0.31 TCGA-21-1083-01 17 34074036 34074036 T A GAS2L2 Missense_Mutation p.R362W 0.33 deleterious(0) probably_damaging(0.981) TCGA-21-1083-01 17 34199423 34199423 C G CCL5 Missense_Mutation p.K78N 0.37 deleterious(0.05) benign(0.063) TCGA-21-1083-01 17 34913067 34913067 G A GGNBP2 Missense_Mutation p.G107R 0.36 deleterious(0.04) benign(0.014) TCGA-21-1083-01 17 36486031 36486031 G A GPR179 Nonsense_Mutation p.Q1141* 0.36 TCGA-21-1083-01 17 38249332 38249332 C A THRA Silent p.G390G 0.38 TCGA-21-1083-01 17 39034422 39034422 G T KRT20 Missense_Mutation p.R372S 0.34 tolerated(0.15) possibly_damaging(0.477) TCGA-21-1083-01 17 40379681 40379681 G T STAT5B Missense_Mutation p.P51T 0.28 deleterious(0.02) probably_damaging(0.998) TCGA-21-1083-01 17 40489843 40489843 C A STAT3 Missense_Mutation p.V195L 0.33 tolerated(0.73) benign(0.102) TCGA-21-1083-01 17 40832566 40832566 A T CCR10 Missense_Mutation p.Y32N 0.44 tolerated(0.79) benign(0.013) TCGA-21-1083-01 17 41244585 41244585 G C BRCA1 Nonsense_Mutation p.S988* 0.33 TCGA-21-1083-01 17 41244882 41244882 G C BRCA1 Missense_Mutation p.S889C 0.34 deleterious(0.01) probably_damaging(0.993) TCGA-21-1083-01 17 43318809 43318809 G T FMNL1 Missense_Mutation p.A465S 0.33 tolerated(0.65) unknown(0) TCGA-21-1083-01 17 45206791 45206791 C T CDC27 Missense_Mutation p.A716T 0.34 deleterious(0) probably_damaging(0.997) TCGA-21-1083-01 17 45891145 45891145 C A OSBPL7 Silent p.A469A 0.39 TCGA-21-1083-01 17 54991309 54991309 G C TRIM25 Missense_Mutation p.S14C 0.47 tolerated(0.08) possibly_damaging(0.521) TCGA-21-1083-01 17 55917129 55917129 C G MRPS23 3'UTR 0.31 TCGA-21-1083-01 17 58235696 58235696 G C CA4 Missense_Mutation p.E211D 0.31 deleterious(0.04) benign(0.121) TCGA-21-1083-01 17 60765900 60765901 - T MRC2 Frame_Shift_Ins p.W1035Lfs*33 0.36 TCGA-21-1083-01 17 60814535 60814535 G C MARCH10 Missense_Mutation p.H232D 0.34 deleterious(0.05) benign(0.28) TCGA-21-1083-01 17 60814536 60814536 C T MARCH10 Silent p.L231L 0.34 TCGA-21-1083-01 17 62577065 62577065 A G SMURF2 Missense_Mutation p.F205S 0.37 tolerated(0.42) benign(0.04) TCGA-21-1083-01 17 72473670 72473670 G T CD300A Splice_Site p.X210_splice 0.35 TCGA-21-1083-01 17 73780853 73780853 G A UNK 5'UTR 0.26 TCGA-21-1083-01 17 74161606 74161606 C T RNF157 Missense_Mutation p.V217I 0.35 tolerated(0.34) benign(0.013) TCGA-21-1083-01 17 7577547 7577547 C A TP53 Missense_Mutation p.G245V 0.38 deleterious(0) probably_damaging(1) TCGA-21-1083-01 17 79204451 79204451 C A ENTHD2 Missense_Mutation p.G308W 0.30 deleterious(0.03) probably_damaging(0.99) TCGA-21-1083-01 17 8722493 8722493 G T PIK3R6 Missense_Mutation p.L634M 0.38 tolerated(0.24) benign(0.409) TCGA-21-1083-01 18 12512519 12512519 C T SPIRE1 Silent p.K247K 0.63 TCGA-21-1083-01 18 18586733 18586733 T C ROCK1 Missense_Mutation p.Q522R 0.22 tolerated(0.15) probably_damaging(0.992) TCGA-21-1083-01 18 22804797 22804797 C A ZNF521 Missense_Mutation p.V1029L 0.34 tolerated(0.42) probably_damaging(0.99) TCGA-21-1083-01 18 22805362 22805362 G T ZNF521 Silent p.P840P 0.22 TCGA-21-1083-01 18 2666158 2666158 A T SMCHD1 Silent p.T63T 0.50 TCGA-21-1083-01 18 28651633 28651633 C A DSC2 Missense_Mutation p.G688V 0.19 tolerated(0.19) possibly_damaging(0.461) TCGA-21-1083-01 18 28711727 28711727 C A DSC1 Nonsense_Mutation p.G773* 0.21 TCGA-21-1083-01 18 32843975 32843975 C G ZSCAN30 Missense_Mutation p.E114D 0.30 tolerated(0.09) benign(0.011) TCGA-21-1083-01 18 33779917 33779917 G T MOCOS Missense_Mutation p.D191Y 0.41 deleterious(0.01) benign(0.158) TCGA-21-1083-01 18 61231240 61231240 G A SERPINB12 Missense_Mutation p.A178T 0.80 tolerated(1) benign(0.002) TCGA-21-1083-01 18 61323181 61323181 G C SERPINB3 Missense_Mutation p.L295V 0.12 deleterious(0) probably_damaging(1) TCGA-21-1083-01 18 76755246 76755246 G A SALL3 Silent p.Q1085Q 0.50 TCGA-21-1083-01 18 77464813 77464813 C T CTDP1 Missense_Mutation p.T223M 0.30 deleterious(0) probably_damaging(1) TCGA-21-1083-01 18 77893538 77893538 C G ADNP2 Missense_Mutation p.S81C 0.44 deleterious(0) probably_damaging(0.983) TCGA-21-1083-01 19 10107141 10107141 C A COL5A3 Missense_Mutation p.A464S 0.21 unknown(0) TCGA-21-1083-01 19 10439465 10439465 G A RAVER1 Silent p.L220L 0.10 TCGA-21-1083-01 19 10450276 10450276 T A ICAM3 Silent p.V5V 0.24 TCGA-21-1083-01 19 11170440 11170440 C T SMARCA4 Silent p.D1549D 0.28 TCGA-21-1083-01 19 12090124 12090124 G T ZNF763 3'UTR 0.45 TCGA-21-1083-01 19 12444456 12444456 A C ZNF563 5'UTR 0.50 TCGA-21-1083-01 19 12936553 12936553 G T RTBDN Missense_Mutation p.S251R 0.50 tolerated_low_confidence(0.08) unknown(0) TCGA-21-1083-01 19 14273875 14273875 G T LPHN1 Silent p.T251T 0.18 TCGA-21-1083-01 19 14273876 14273876 G T LPHN1 Missense_Mutation p.T251N 0.18 tolerated(1) benign(0.001) TCGA-21-1083-01 19 14730198 14730198 A T EMR3 3'UTR 0.51 TCGA-21-1083-01 19 14740949 14740949 C A EMR3 Missense_Mutation p.V572L 0.24 deleterious(0.03) benign(0.193) TCGA-21-1083-01 19 15587385 15587385 C A PGLYRP2 Missense_Mutation p.Q32H 0.33 deleterious(0.04) probably_damaging(0.971) TCGA-21-1083-01 19 16513078 16513078 T A EPS15L1 Intron 0.43 TCGA-21-1083-01 19 17314006 17314006 G T MYO9B Silent p.P1643P 0.36 TCGA-21-1083-01 19 1788984 1788984 C T ATP8B3 Missense_Mutation p.C994Y 0.39 deleterious(0) benign(0.439) TCGA-21-1083-01 19 17918610 17918610 G T B3GNT3 5'UTR 0.23 TCGA-21-1083-01 19 17983302 17983302 C G SLC5A5 Silent p.P58P 0.56 TCGA-21-1083-01 19 18085023 18085023 A C KCNN1 Missense_Mutation p.Y109S 0.33 deleterious(0.01) possibly_damaging(0.901) TCGA-21-1083-01 19 18119180 18119180 G C ARRDC2 Missense_Mutation p.E21Q 0.28 tolerated(0.56) possibly_damaging(0.726) TCGA-21-1083-01 19 20308051 20308051 G A ZNF486 Missense_Mutation p.E178K 0.39 tolerated(0.15) benign(0) TCGA-21-1083-01 19 22575632 22575632 G T ZNF98 Missense_Mutation p.H135Q 0.20 tolerated(0.34) benign(0.017) TCGA-21-1083-01 19 22940764 22940764 G C ZNF99 Nonsense_Mutation p.Y649* 0.24 TCGA-21-1083-01 19 2877532 2877532 G T ZNF556 Silent p.T192T 0.25 TCGA-21-1083-01 19 33444529 33444529 T A CEP89 Nonsense_Mutation p.R162* 0.08 TCGA-21-1083-01 19 34180176 34180176 G A CHST8 Silent p.L3L 0.23 TCGA-21-1083-01 19 35449016 35449016 C T ZNF792 Silent p.Q581Q 0.14 TCGA-21-1083-01 19 35827143 35827143 T G CD22 Missense_Mutation p.F206C 0.53 deleterious(0) probably_damaging(0.967) TCGA-21-1083-01 19 36018290 36018290 C A SBSN Missense_Mutation p.Q298H 0.29 tolerated(0.06) possibly_damaging(0.891) TCGA-21-1083-01 19 37100731 37100731 C T ZNF382 Intron 0.22 TCGA-21-1083-01 19 38056144 38056144 A G ZNF571 Missense_Mutation p.C396R 0.14 deleterious(0) probably_damaging(0.992) TCGA-21-1083-01 19 38230037 38230037 T C ZNF573 Missense_Mutation p.T452A 0.21 tolerated(0.28) benign(0.256) TCGA-21-1083-01 19 39090613 39090613 G A MAP4K1 Missense_Mutation p.R541W 0.44 deleterious(0.01) probably_damaging(0.973) TCGA-21-1083-01 19 39396022 39396022 G A NFKBIB Missense_Mutation p.E156K 0.20 tolerated_low_confidence(0.52) benign(0.036) TCGA-21-1083-01 19 40748522 40748522 C A AKT2 Missense_Mutation p.M120I 0.16 tolerated(0.16) benign(0.002) TCGA-21-1083-01 19 41009888 41009888 G T SPTBN4 Missense_Mutation p.R505L 0.17 deleterious(0) benign(0.11) TCGA-21-1083-01 19 41063045 41063045 G T SPTBN4 Silent p.A1802A 0.46 TCGA-21-1083-01 19 42301530 42301530 T C CEACAM3 Missense_Mutation p.L25P 0.44 deleterious(0) possibly_damaging(0.759) TCGA-21-1083-01 19 42563522 42563522 G A GRIK5 Silent p.I222I 0.15 TCGA-21-1083-01 19 42585066 42585066 G C ZNF574 Missense_Mutation p.D770H 0.18 deleterious(0) probably_damaging(0.988) TCGA-21-1083-01 19 43421950 43421950 C T PSG6 5'UTR 0.15 TCGA-21-1083-01 19 43421957 43421957 C T PSG6 5'UTR 0.15 TCGA-21-1083-01 19 43514145 43514145 G T PSG11 3'UTR 0.22 TCGA-21-1083-01 19 4363767 4363767 C A SH3GL1 Nonsense_Mutation p.E192* 0.23 TCGA-21-1083-01 19 4818289 4818289 C G TICAM1 Missense_Mutation p.R34P 0.19 tolerated(0.13) possibly_damaging(0.693) TCGA-21-1083-01 19 48259067 48259067 C G GLTSCR2 Silent p.L428L 0.18 TCGA-21-1083-01 19 50375082 50375082 G A AKT1S1 Silent p.P168P 0.47 TCGA-21-1083-01 19 50386150 50386150 G T TBC1D17 Splice_Site p.X309_splice 0.47 TCGA-21-1083-01 19 50881892 50881892 G A NR1H2 Missense_Mutation p.G196R 0.48 tolerated(0.52) benign(0.036) TCGA-21-1083-01 19 51298203 51298203 G A ACPT Missense_Mutation p.E383K 0.21 tolerated(0.21) benign(0.002) TCGA-21-1083-01 19 51329922 51329922 G - KLK15 Frame_Shift_Del p.M192Wfs*62 0.33 TCGA-21-1083-01 19 5220039 5220039 T A PTPRS Nonsense_Mutation p.K1226* 0.23 TCGA-21-1083-01 19 52869602 52869602 A T ZNF610 Missense_Mutation p.N324I 0.25 tolerated(0.08) benign(0.018) TCGA-21-1083-01 19 53652056 53652056 G A ZNF347 Missense_Mutation p.S51F 0.18 tolerated(0.38) benign(0.001) TCGA-21-1083-01 19 5456238 5456238 C G ZNRF4 Missense_Mutation p.L246V 0.25 tolerated(0.19) benign(0.093) TCGA-21-1083-01 19 55179344 55179344 C A LILRB4 Silent p.P407P 0.48 TCGA-21-1083-01 19 55290063 55290063 G T KIR2DL1 Splice_Site p.X222_splice 0.47 TCGA-21-1083-01 19 55377838 55377838 G T KIR3DL2 Missense_Mutation p.M373I 0.41 tolerated(0.09) benign(0.002) TCGA-21-1083-01 19 56467398 56467398 G C NLRP8 Silent p.V658V 0.48 TCGA-21-1083-01 19 56895778 56895778 C G ZNF582 Missense_Mutation p.R336S 0.47 deleterious(0) benign(0.001) TCGA-21-1083-01 19 58213331 58213331 T C ZNF154 Missense_Mutation p.Y329C 0.50 deleterious(0) probably_damaging(0.995) TCGA-21-1083-01 19 6693049 6693049 G C C3 Silent p.L1092L 0.19 TCGA-21-1083-01 19 806420 806420 C T PTBP1 Missense_Mutation p.P328L 0.69 deleterious(0.03) benign(0.046) TCGA-21-1083-01 19 8922485 8922485 C A ZNF558 Missense_Mutation p.L227F 0.48 tolerated(0.7) benign(0.104) TCGA-21-1083-01 19 8976313 8976313 C T MUC16 Missense_Mutation p.G14172D 0.20 probably_damaging(0.995) TCGA-21-1083-01 19 9057911 9057911 G C MUC16 Missense_Mutation p.I9845M 0.19 unknown(0) TCGA-21-1083-01 19 9061047 9061047 C A MUC16 Missense_Mutation p.G8800V 0.42 unknown(0) TCGA-21-1083-01 19 9061048 9061048 C T MUC16 Missense_Mutation p.G8800S 0.42 unknown(0) TCGA-21-1083-01 19 9204317 9204317 G A OR1M1 Missense_Mutation p.A133T 0.18 tolerated(1) benign(0.001) TCGA-21-1083-01 19 9639918 9639918 G A ZNF426 Missense_Mutation p.S268F 0.39 deleterious(0.01) benign(0.06) TCGA-21-1083-01 1 100571430 100571430 C G SASS6 Missense_Mutation p.E480Q 0.17 deleterious(0) possibly_damaging(0.836) TCGA-21-1083-01 1 103573808 103573808 A T COL11A1 5'UTR 0.67 TCGA-21-1083-01 1 109803848 109803848 C T CELSR2 Silent p.R1381R 0.41 TCGA-21-1083-01 1 110086325 110086325 C A GPR61 Silent p.V227V 0.18 TCGA-21-1083-01 1 114394674 114394674 T C PTPN22 Missense_Mutation p.Q268R 0.12 deleterious(0) probably_damaging(1) TCGA-21-1083-01 1 115218160 115218160 C A AMPD1 Missense_Mutation p.S590I 0.40 tolerated(0.07) benign(0.392) TCGA-21-1083-01 1 144931769 144931769 C A PDE4DIP Intron 0.20 TCGA-21-1083-01 1 145293558 145293558 G T NBPF10 Silent p.L51L 0.05 TCGA-21-1083-01 1 145301729 145301729 A T NBPF10 Missense_Mutation p.E333V 0.05 possibly_damaging(0.643) TCGA-21-1083-01 1 148004599 148004599 C A NBPF14 Silent p.T911T 0.09 TCGA-21-1083-01 1 149939413 149939413 C G OTUD7B Missense_Mutation p.S103T 0.27 tolerated(0.23) probably_damaging(0.991) TCGA-21-1083-01 1 150297363 150297363 G C PRPF3 5'UTR 0.27 TCGA-21-1083-01 1 152278589 152278589 C T FLG Missense_Mutation p.D2925N 0.20 benign(0.095) TCGA-21-1083-01 1 152285250 152285250 T G FLG Silent p.A704A 0.31 TCGA-21-1083-01 1 152484007 152484007 A C LCE5A 5'UTR 0.35 TCGA-21-1083-01 1 152484008 152484008 G T LCE5A 5'UTR 0.34 TCGA-21-1083-01 1 153973368 153973368 C T NUP210L Missense_Mutation p.V1784M 0.40 deleterious(0) probably_damaging(0.937) TCGA-21-1083-01 1 154184627 154184627 C A C1orf43 Intron 0.28 TCGA-21-1083-01 1 154437969 154437969 G A IL6R 3'UTR 0.40 TCGA-21-1083-01 1 154918886 154918886 C A PBXIP1 Missense_Mutation p.G422W 0.29 deleterious(0) probably_damaging(0.997) TCGA-21-1083-01 1 155450803 155450803 G C ASH1L Missense_Mutation p.H620D 0.31 deleterious_low_confidence(0.01) benign(0.067) TCGA-21-1083-01 1 155838462 155838462 C T SYT11 Silent p.L247L 0.31 TCGA-21-1083-01 1 155838481 155838481 C G SYT11 Missense_Mutation p.R254G 0.25 deleterious(0) probably_damaging(1) TCGA-21-1083-01 1 157514656 157514656 G A FCRL5 Missense_Mutation p.P175L 0.33 tolerated(0.66) benign(0.002) TCGA-21-1083-01 1 157804310 157804310 C A CD5L Missense_Mutation p.W202L 0.42 tolerated(0.14) probably_damaging(1) TCGA-21-1083-01 1 15808757 15808757 C A CELA2B Intron 0.59 TCGA-21-1083-01 1 158618363 158618363 C G SPTA1 Missense_Mutation p.S1217T 0.23 tolerated(0.07) possibly_damaging(0.867) TCGA-21-1083-01 1 159284306 159284306 G A OR10J3 Silent p.T48T 0.29 TCGA-21-1083-01 1 160771783 160771783 C A LY9 Intron 0.44 TCGA-21-1083-01 1 161561127 161561127 C G FCGR2C 5'Flank 0.35 TCGA-21-1083-01 1 161953556 161953556 G C OLFML2B Missense_Mutation p.T721R 0.30 deleterious(0) probably_damaging(0.994) TCGA-21-1083-01 1 161953843 161953843 G A OLFML2B Silent p.D625D 0.40 TCGA-21-1083-01 1 166962078 166962078 G C MAEL Missense_Mutation p.G161R 0.35 deleterious(0.04) probably_damaging(1) TCGA-21-1083-01 1 167823675 167823675 T A ADCY10 Nonsense_Mutation p.K742* 0.38 TCGA-21-1083-01 1 169388142 169388142 C A CCDC181 Intron 0.37 TCGA-21-1083-01 1 169511790 169511790 C G F5 Silent p.G846G 0.35 TCGA-21-1083-01 1 169699657 169699657 C A SELE Missense_Mutation p.D211Y 0.29 deleterious(0) possibly_damaging(0.863) TCGA-21-1083-01 1 172411110 172411110 T A PIGC Missense_Mutation p.K218M 0.37 deleterious(0.02) benign(0.338) TCGA-21-1083-01 1 175097184 175097184 G T TNN Missense_Mutation p.R1021L 0.27 tolerated(0.18) benign(0.36) TCGA-21-1083-01 1 176563792 176563792 C G PAPPA2 Missense_Mutation p.T351S 0.28 deleterious(0.02) possibly_damaging(0.615) TCGA-21-1083-01 1 176668389 176668389 C A PAPPA2 Missense_Mutation p.T967N 0.34 deleterious(0) possibly_damaging(0.883) TCGA-21-1083-01 1 179983016 179983016 G T CEP350 Missense_Mutation p.R476S 0.30 benign(0.271) TCGA-21-1083-01 1 181452965 181452965 C T CACNA1E Missense_Mutation p.P29S 0.41 deleterious_low_confidence(0.04) possibly_damaging(0.641) TCGA-21-1083-01 1 182640990 182640990 C T RGS8 Intron 0.38 TCGA-21-1083-01 1 18808888 18808888 C T KLHDC7A Silent p.I471I 0.55 TCGA-21-1083-01 1 18809912 18809912 T G KLHDC7A 3'UTR 0.37 TCGA-21-1083-01 1 196695711 196695711 G C CFH Missense_Mutation p.R662T 0.36 deleterious(0.04) benign(0.23) TCGA-21-1083-01 1 196712626 196712626 G T CFH Missense_Mutation p.V1060L 0.22 tolerated(0.78) benign(0.004) TCGA-21-1083-01 1 196965030 196965030 G A CFHR5 Splice_Site p.X264_splice 0.21 TCGA-21-1083-01 1 197024937 197024937 A T F13B Missense_Mutation p.V421E 0.35 deleterious(0) probably_damaging(0.998) TCGA-21-1083-01 1 198687332 198687332 G A PTPRC Silent p.L520L 0.31 TCGA-21-1083-01 1 200826907 200826907 A G CAMSAP2 Missense_Mutation p.N1386S 0.28 deleterious(0.01) probably_damaging(0.993) TCGA-21-1083-01 1 201380545 201380545 G T TNNI1 Missense_Mutation p.H132Q 0.41 deleterious(0.03) probably_damaging(0.957) TCGA-21-1083-01 1 202568478 202568478 G T SYT2 Missense_Mutation p.D307E 0.29 deleterious(0) benign(0.009) TCGA-21-1083-01 1 206231061 206231061 T A AVPR1B Missense_Mutation p.S398R 0.30 tolerated(0.33) benign(0.003) TCGA-21-1083-01 1 207726120 207726120 G T CR1 Missense_Mutation p.D1009Y 0.42 deleterious(0.01) possibly_damaging(0.888) TCGA-21-1083-01 1 216371690 216371690 A T USH2A Missense_Mutation p.S1350T 0.35 probably_damaging(0.98) TCGA-21-1083-01 1 216373217 216373217 G T USH2A Missense_Mutation p.P1188H 0.29 possibly_damaging(0.694) TCGA-21-1083-01 1 216380643 216380643 G T USH2A Silent p.I1096I 0.31 TCGA-21-1083-01 1 222731950 222731950 T A TAF1A Intron 0.26 TCGA-21-1083-01 1 224927241 224927241 G T CNIH3 3'UTR 0.32 TCGA-21-1083-01 1 231471604 231471604 C T EXOC8 Missense_Mutation p.E630K 0.36 deleterious(0.01) benign(0.114) TCGA-21-1083-01 1 236212060 236212060 G A NID1 Missense_Mutation p.A152V 0.47 tolerated(0.75) benign(0) TCGA-21-1083-01 1 237015920 237015920 C T MTR Missense_Mutation p.L599F 0.37 deleterious(0) probably_damaging(0.981) TCGA-21-1083-01 1 240071748 240071748 A G CHRM3 Missense_Mutation p.S333G 0.32 deleterious(0.01) possibly_damaging(0.739) TCGA-21-1083-01 1 240072488 240072488 C T CHRM3 Silent p.V579V 0.30 TCGA-21-1083-01 1 240969503 240969503 C A RGS7 Missense_Mutation p.K402N 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-21-1083-01 1 241929606 241929606 T C WDR64 Silent p.N668N 0.30 TCGA-21-1083-01 1 244583572 244583572 C A ADSS Missense_Mutation p.M230I 0.32 tolerated(0.07) possibly_damaging(0.761) TCGA-21-1083-01 1 247039401 247039401 C T AHCTF1 Missense_Mutation p.R1018Q 0.26 deleterious(0.03) possibly_damaging(0.897) TCGA-21-1083-01 1 247582126 247582126 G T NLRP3 Silent p.L10L 0.38 TCGA-21-1083-01 1 247655280 247655280 A T OR2W5 RNA 0.35 TCGA-21-1083-01 1 247978970 247978970 A C OR14A16 Missense_Mutation p.M21R 0.41 deleterious(0.01) benign(0.002) TCGA-21-1083-01 1 248028142 248028142 A T TRIM58 Missense_Mutation p.S218C 0.29 deleterious(0.02) benign(0.021) TCGA-21-1083-01 1 248031315 248031315 A C TRIM58 Missense_Mutation p.K274T 0.34 deleterious(0) benign(0.347) TCGA-21-1083-01 1 248039403 248039403 G T TRIM58 Missense_Mutation p.W358L 0.34 deleterious(0) probably_damaging(1) TCGA-21-1083-01 1 248039404 248039404 G T TRIM58 Missense_Mutation p.W358C 0.34 deleterious(0) probably_damaging(1) TCGA-21-1083-01 1 248059089 248059089 C T OR2W3 Silent p.S67S 0.28 TCGA-21-1083-01 1 248112865 248112865 G T OR2L8 Missense_Mutation p.A236S 0.39 tolerated(0.12) possibly_damaging(0.718) TCGA-21-1083-01 1 248263246 248263246 A G OR2L13 Missense_Mutation p.D190G 0.35 deleterious(0) possibly_damaging(0.861) TCGA-21-1083-01 1 248685312 248685312 G T OR2G6 Missense_Mutation p.R122L 0.42 deleterious(0) possibly_damaging(0.857) TCGA-21-1083-01 1 26349042 26349042 G T EXTL1 5'UTR 0.53 TCGA-21-1083-01 1 37325474 37325474 C A GRIK3 Nonsense_Mutation p.E311* 0.30 TCGA-21-1083-01 1 38184469 38184469 C A EPHA10 Missense_Mutation p.D926Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-21-1083-01 1 41945067 41945067 C A EDN2 3'UTR 0.37 TCGA-21-1083-01 1 44087706 44087706 C A PTPRF 3'UTR 0.16 TCGA-21-1083-01 1 45120741 45120741 G A TMEM53 Silent p.L108L 0.08 TCGA-21-1083-01 1 47024272 47024272 T C MKNK1 Missense_Mutation p.D458G 0.48 deleterious_low_confidence(0.01) benign(0.039) TCGA-21-1083-01 1 63270853 63270853 G T ATG4C Missense_Mutation p.L29F 0.30 deleterious(0.04) probably_damaging(0.921) TCGA-21-1083-01 1 67147890 67147890 G A SGIP1 Missense_Mutation p.E385K 0.20 deleterious_low_confidence(0.01) probably_damaging(0.931) TCGA-21-1083-01 1 7724819 7724819 G C CAMTA1 Missense_Mutation p.G738R 0.54 deleterious_low_confidence(0) possibly_damaging(0.674) TCGA-21-1083-01 1 82452594 82452594 G T LPHN2 Intron 0.18 TCGA-21-1083-01 1 84701035 84701035 G T PRKACB 3'UTR 0.23 TCGA-21-1083-01 1 86249196 86249196 C T COL24A1 Missense_Mutation p.G1423S 0.37 deleterious(0) probably_damaging(1) TCGA-21-1083-01 1 89448502 89448502 T A RBMXL1 Silent p.S336S 0.41 TCGA-21-1083-01 1 9009472 9009472 A G CA6 Missense_Mutation p.E77G 0.52 tolerated(0.1) benign(0.125) TCGA-21-1083-01 1 90401106 90401106 G A LRRC8D Missense_Mutation p.G827R 0.36 deleterious(0.03) possibly_damaging(0.847) TCGA-21-1083-01 20 21307207 21307207 A G XRN2 Missense_Mutation p.R95G 0.26 deleterious(0) probably_damaging(1) TCGA-21-1083-01 20 2297878 2297878 G C TGM3 Silent p.G278G 0.35 TCGA-21-1083-01 20 23804717 23804717 G T CST2 Silent p.I122I 0.25 TCGA-21-1083-01 20 2397927 2397927 C A TGM6 Missense_Mutation p.F462L 0.44 tolerated(0.74) benign(0.001) TCGA-21-1083-01 20 25457503 25457503 C G NINL Missense_Mutation p.E808D 0.31 tolerated(0.13) benign(0.014) TCGA-21-1083-01 20 34528907 34528907 A T PHF20 Missense_Mutation p.H945L 0.37 deleterious(0) probably_damaging(0.995) TCGA-21-1083-01 20 36572423 36572423 G T VSTM2L Missense_Mutation p.R128L 0.39 deleterious(0) probably_damaging(1) TCGA-21-1083-01 20 36851957 36851957 G T KIAA1755 Missense_Mutation p.P751T 0.23 tolerated(0.32) benign(0.193) TCGA-21-1083-01 20 37581191 37581191 T C FAM83D 3'UTR 0.35 TCGA-21-1083-01 20 42355458 42355458 G T GTSF1L 5'UTR 0.25 TCGA-21-1083-01 20 43933384 43933384 G T MATN4 Missense_Mutation p.R43S 0.41 probably_damaging(0.999) TCGA-21-1083-01 20 44639869 44639869 C A MMP9 Missense_Mutation p.T246N 0.37 tolerated(0.07) benign(0.014) TCGA-21-1083-01 20 44639870 44639870 C A MMP9 Silent p.T246T 0.37 TCGA-21-1083-01 20 45927589 45927589 C - ZMYND8 Frame_Shift_Del p.V113Ffs*23 0.33 TCGA-21-1083-01 20 49626161 49626161 C T KCNG1 Missense_Mutation p.V239I 0.30 tolerated(1) benign(0.001) TCGA-21-1083-01 20 5096133 5096133 G A PCNA Missense_Mutation p.S223L 0.34 tolerated(0.09) benign(0.007) TCGA-21-1083-01 20 5157224 5157224 A G CDS2 Intron 0.36 TCGA-21-1083-01 20 55027023 55027023 C G CASS4 Missense_Mutation p.A264G 0.39 tolerated(0.36) benign(0.002) TCGA-21-1083-01 20 5753536 5753536 G T C20orf196 Missense_Mutation p.G9C 0.40 deleterious(0.05) possibly_damaging(0.894) TCGA-21-1083-01 20 61908555 61908555 A T ARFGAP1 Splice_Site p.X115_splice 0.41 TCGA-21-1083-01 20 8705338 8705338 A T PLCB1 Missense_Mutation p.E539D 0.36 deleterious(0.01) possibly_damaging(0.706) TCGA-21-1083-01 20 8705339 8705339 A T PLCB1 Missense_Mutation p.M540L 0.35 deleterious(0) benign(0.403) TCGA-21-1083-01 21 22664536 22664536 C - NCAM2 Frame_Shift_Del p.R199Vfs*30 0.34 TCGA-21-1083-01 21 28327100 28327100 C T ADAMTS5 Missense_Mutation p.D399N 0.45 deleterious(0) probably_damaging(1) TCGA-21-1083-01 21 31869240 31869240 C A KRTAP19-4 Silent p.L63L 0.37 TCGA-21-1083-01 21 31869241 31869241 A G KRTAP19-4 Missense_Mutation p.L63P 0.37 deleterious_low_confidence(0) unknown(0) TCGA-21-1083-01 21 35288039 35288039 G A ATP5O Missense_Mutation p.S10F 0.29 tolerated(0.14) benign(0.056) TCGA-21-1083-01 21 43857683 43857683 C A UBASH3A Silent p.I493I 0.25 TCGA-21-1083-01 21 45773557 45773557 G T TRPM2 5'UTR 0.50 TCGA-21-1083-01 21 45838421 45838421 C A TRPM2 Silent p.I1148I 0.19 TCGA-21-1083-01 21 46101853 46101853 G T KRTAP12-1 Silent p.P62P 0.25 TCGA-21-1083-01 22 16449044 16449044 G T OR11H1 Missense_Mutation p.S254Y 0.37 deleterious(0) probably_damaging(0.992) TCGA-21-1083-01 22 24123565 24123565 G A MMP11 Silent p.E348E 0.49 TCGA-21-1083-01 22 26317319 26317319 C A MYO18B Silent p.T1820T 0.20 TCGA-21-1083-01 22 30862996 30862996 C A SEC14L3 Missense_Mutation p.W164C 0.37 deleterious(0) probably_damaging(0.996) TCGA-21-1083-01 22 31059314 31059314 A G DUSP18 3'UTR 0.42 TCGA-21-1083-01 22 32439270 32439270 T C SLC5A1 Translation_Start_Site p.M1? 0.30 deleterious_low_confidence(0) benign(0.145) TCGA-21-1083-01 22 37637123 37637123 T A RAC2 Intron 0.40 TCGA-21-1083-01 22 38822865 38822865 G T KCNJ4 Missense_Mutation p.L425M 0.31 tolerated_low_confidence(0.19) benign(0.006) TCGA-21-1083-01 22 38864268 38864268 G T KDELR3 Silent p.L10L 0.26 TCGA-21-1083-01 22 41282437 41282437 A G XPNPEP3 Missense_Mutation p.Q237R 0.32 tolerated(1) benign(0) TCGA-21-1083-01 22 42415748 42415748 T C WBP2NL Missense_Mutation p.V85A 0.39 deleterious(0) possibly_damaging(0.872) TCGA-21-1083-01 22 50615849 50615849 G A PANX2 Silent p.L236L 0.26 TCGA-21-1083-01 2 100199460 100199460 C A AFF3 Missense_Mutation p.V890L 0.27 tolerated(1) benign(0) TCGA-21-1083-01 2 106710605 106710605 C T UXS1 Silent p.L385L 0.37 TCGA-21-1083-01 2 107084682 107084682 C T RGPD3 Silent p.S21S 0.29 TCGA-21-1083-01 2 113174777 113174777 G T RGPD8 Missense_Mutation p.L259M 0.31 deleterious(0) possibly_damaging(0.854) TCGA-21-1083-01 2 114399818 114399818 A T RABL2A 3'UTR 0.32 TCGA-21-1083-01 2 11798765 11798765 T A NTSR2 Missense_Mutation p.Y358F 0.37 deleterious(0.04) benign(0.104) TCGA-21-1083-01 2 120362333 120362333 C T PCDP1 Nonsense_Mutation p.R293* 0.41 TCGA-21-1083-01 2 125504963 125504963 G T CNTNAP5 Splice_Site p.X744_splice 0.32 TCGA-21-1083-01 2 128263028 128263028 C T IWS1 Missense_Mutation p.V151I 0.35 tolerated_low_confidence(0.31) benign(0.001) TCGA-21-1083-01 2 128341741 128341741 A T MYO7B Missense_Mutation p.Q463L 0.38 deleterious(0) probably_damaging(0.999) TCGA-21-1083-01 2 131520716 131520716 C T AMER3 Silent p.D357D 0.32 TCGA-21-1083-01 2 132021108 132021108 C G POTEE Missense_Mutation p.L694V 0.47 tolerated_low_confidence(0.41) benign(0.006) TCGA-21-1083-01 2 132021169 132021169 C G POTEE Missense_Mutation p.S714C 0.54 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-21-1083-01 2 132021893 132021893 C G POTEE Missense_Mutation p.F955L 0.17 deleterious_low_confidence(0) possibly_damaging(0.656) TCGA-21-1083-01 2 141116469 141116469 G C LRP1B Missense_Mutation p.N3726K 0.17 benign(0.403) TCGA-21-1083-01 2 141260624 141260624 C A LRP1B Missense_Mutation p.C2857F 0.30 possibly_damaging(0.639) TCGA-21-1083-01 2 141625302 141625302 C T LRP1B Missense_Mutation p.G1479E 0.41 benign(0.007) TCGA-21-1083-01 2 141747106 141747106 C A LRP1B Missense_Mutation p.C922F 0.29 probably_damaging(0.931) TCGA-21-1083-01 2 144966261 144966261 C A GTDC1 Missense_Mutation p.V30F 0.34 deleterious(0) benign(0.342) TCGA-21-1083-01 2 149247488 149247488 G T MBD5 Missense_Mutation p.Q1196H 0.34 deleterious_low_confidence(0) unknown(0) TCGA-21-1083-01 2 15493769 15493769 T A NBAS Missense_Mutation p.T1333S 0.36 tolerated(0.22) benign(0.015) TCGA-21-1083-01 2 155566216 155566216 C T KCNJ3 Silent p.L268L 0.29 TCGA-21-1083-01 2 158290909 158290909 A T CYTIP Missense_Mutation p.D84E 0.32 tolerated(0.16) benign(0.254) TCGA-21-1083-01 2 160811818 160811818 G T PLA2R1 Missense_Mutation p.P1065T 0.33 deleterious(0.01) benign(0.25) TCGA-21-1083-01 2 16086017 16086017 G T MYCN Missense_Mutation p.R398L 0.27 deleterious(0) probably_damaging(0.956) TCGA-21-1083-01 2 163081995 163081995 T C FAP Missense_Mutation p.M95V 0.33 tolerated(0.09) benign(0.011) TCGA-21-1083-01 2 163693142 163693142 C A KCNH7 Missense_Mutation p.G71V 0.36 deleterious(0) probably_damaging(1) TCGA-21-1083-01 2 165953915 165953915 G T SCN3A Nonsense_Mutation p.Y1362* 0.27 TCGA-21-1083-01 2 166165765 166165765 A T SCN2A Silent p.P232P 0.36 TCGA-21-1083-01 2 166536054 166536054 A C CSRNP3 Missense_Mutation p.S517R 0.18 deleterious_low_confidence(0.02) benign(0.05) TCGA-21-1083-01 2 168103729 168103729 G T XIRP2 Missense_Mutation p.G1943C 0.38 possibly_damaging(0.792) TCGA-21-1083-01 2 169761052 169761052 C A G6PC2 Silent p.V122V 0.34 TCGA-21-1083-01 2 171902702 171902702 C A TLK1 Missense_Mutation p.R384I 0.29 tolerated(0.05) benign(0.035) TCGA-21-1083-01 2 176988268 176988268 G A HOXD9 Missense_Mutation p.E258K 0.48 tolerated(0.07) benign(0.036) TCGA-21-1083-01 2 179247257 179247257 G T OSBPL6 Intron 0.32 TCGA-21-1083-01 2 179393145 179393145 A T TTN Missense_Mutation p.S35745T 0.32 TCGA-21-1083-01 2 179398567 179398567 C G TTN Missense_Mutation p.E34259Q 0.30 TCGA-21-1083-01 2 179398737 179398737 A G TTN Missense_Mutation p.L34202S 0.34 TCGA-21-1083-01 2 179417524 179417524 G T TTN Missense_Mutation p.R30035S 0.38 TCGA-21-1083-01 2 179426285 179426285 C G TTN Missense_Mutation p.E28192Q 0.38 TCGA-21-1083-01 2 179426577 179426577 C G TTN Missense_Mutation p.K28094N 0.33 TCGA-21-1083-01 2 179426912 179426912 C G TTN Missense_Mutation p.D27983H 0.22 TCGA-21-1083-01 2 179427275 179427275 C G TTN Missense_Mutation p.E27862Q 0.36 TCGA-21-1083-01 2 179498275 179498275 G C TTN Missense_Mutation p.P14271A 0.29 TCGA-21-1083-01 2 179606405 179606405 T G TTN Missense_Mutation p.Q3852P 0.34 TCGA-21-1083-01 2 179606555 179606555 G A TTN Missense_Mutation p.S3802F 0.39 TCGA-21-1083-01 2 179613694 179613694 G T TTN Intron 0.34 TCGA-21-1083-01 2 179645899 179645899 C T TTN Missense_Mutation p.V1158I 0.34 TCGA-21-1083-01 2 179666962 179666962 C G TTN Silent p.T66T 0.38 TCGA-21-1083-01 2 179974712 179974712 C G SESTD1 Missense_Mutation p.A669P 0.34 deleterious(0.01) probably_damaging(0.963) TCGA-21-1083-01 2 182542994 182542994 C A NEUROD1 Missense_Mutation p.E198D 0.37 tolerated(0.14) benign(0.048) TCGA-21-1083-01 2 183853798 183853798 T A NCKAP1 Missense_Mutation p.I309F 0.36 tolerated(0.21) benign(0.02) TCGA-21-1083-01 2 1843037 1843037 C G MYT1L Silent p.G986G 0.25 TCGA-21-1083-01 2 187693369 187693369 T G ZSWIM2 Missense_Mutation p.H415P 0.32 deleterious(0.04) possibly_damaging(0.564) TCGA-21-1083-01 2 189861918 189861918 G T COL3A1 Missense_Mutation p.G597C 0.28 unknown(0) TCGA-21-1083-01 2 190554351 190554351 G C ANKAR Missense_Mutation p.A234P 0.37 tolerated(0.26) benign(0.126) TCGA-21-1083-01 2 196883946 196883946 C A DNAH7 Missense_Mutation p.A273S 0.24 tolerated(0.29) benign(0.001) TCGA-21-1083-01 2 201478689 201478689 G A AOX1 Missense_Mutation p.M537I 0.39 tolerated(0.29) benign(0.019) TCGA-21-1083-01 2 204066336 204066336 C T NBEAL1 Missense_Mutation p.H2408Y 0.38 tolerated(0.08) benign(0.225) TCGA-21-1083-01 2 204820649 204820649 C G ICOS Missense_Mutation p.P117A 0.38 tolerated(0.07) probably_damaging(1) TCGA-21-1083-01 2 206989001 206989001 C A NDUFS1 Splice_Site p.X712_splice 0.36 TCGA-21-1083-01 2 210559002 210559002 A G MAP2 Missense_Mutation p.N703S 0.33 deleterious(0) probably_damaging(0.999) TCGA-21-1083-01 2 212488710 212488710 C A ERBB4 Missense_Mutation p.L713F 0.32 deleterious(0.05) probably_damaging(0.99) TCGA-21-1083-01 2 21255447 21255447 G T APOB Silent p.I377I 0.39 TCGA-21-1083-01 2 219558477 219558477 G T STK36 Missense_Mutation p.G727V 0.21 tolerated(0.13) benign(0.001) TCGA-21-1083-01 2 220166958 220166958 G T PTPRN Missense_Mutation p.Q299K 0.41 tolerated(0.16) benign(0.001) TCGA-21-1083-01 2 224462813 224462813 C T SCG2 Silent p.E396E 0.26 TCGA-21-1083-01 2 225378299 225378299 G T CUL3 Nonsense_Mutation p.S199* 0.33 TCGA-21-1083-01 2 227661995 227661995 C A IRS1 Missense_Mutation p.R487L 0.46 tolerated(0.1) probably_damaging(0.987) TCGA-21-1083-01 2 233537084 233537084 G T EFHD1 Silent p.L172L 0.33 TCGA-21-1083-01 2 233537085 233537085 G T EFHD1 Missense_Mutation p.A173S 0.31 deleterious(0) probably_damaging(0.996) TCGA-21-1083-01 2 233680432 233680432 G T GIGYF2 Missense_Mutation p.K752N 0.17 probably_damaging(0.997) TCGA-21-1083-01 2 241537314 241537314 G T CAPN10 Missense_Mutation p.G585C 0.22 deleterious(0.02) possibly_damaging(0.897) TCGA-21-1083-01 2 241631428 241631428 C G AQP12A Missense_Mutation p.A33G 0.18 tolerated(0.08) benign(0.322) TCGA-21-1083-01 2 241710385 241710385 C T KIF1A Intron 0.24 TCGA-21-1083-01 2 242289548 242289548 G T SEPT2 Missense_Mutation p.G349C 0.33 deleterious(0.01) unknown(0) TCGA-21-1083-01 2 27360304 27360304 G A C2orf53 Silent p.F298F 0.49 TCGA-21-1083-01 2 27686048 27686048 C T IFT172 Silent p.R646R 0.31 TCGA-21-1083-01 2 29519919 29519919 C T ALK Missense_Mutation p.R551Q 0.35 tolerated(0.24) benign(0.036) TCGA-21-1083-01 2 32517349 32517349 C G YIPF4 Missense_Mutation p.P113A 0.30 deleterious(0.04) possibly_damaging(0.766) TCGA-21-1083-01 2 36669814 36669814 C G CRIM1 Missense_Mutation p.P269A 0.20 deleterious(0.01) probably_damaging(0.98) TCGA-21-1083-01 2 43984403 43984403 G T PLEKHH2 Missense_Mutation p.R1314M 0.31 deleterious(0) probably_damaging(0.987) TCGA-21-1083-01 2 44073348 44073348 C A ABCG8 Missense_Mutation p.P74T 0.29 deleterious(0) possibly_damaging(0.589) TCGA-21-1083-01 2 44531398 44531398 C T SLC3A1 Missense_Mutation p.T418I 0.36 tolerated(0.08) benign(0.144) TCGA-21-1083-01 2 48914996 48914997 - T LHCGR Frame_Shift_Ins p.R647Qfs*3 0.29 TCGA-21-1083-01 2 51255190 51255190 G C NRXN1 Silent p.G74G 0.33 TCGA-21-1083-01 2 61566817 61566817 C A USP34 Splice_Site p.X834_splice 0.25 TCGA-21-1083-01 2 68544186 68544186 G T CNRIP1 Intron 0.35 TCGA-21-1083-01 2 7160656 7160657 TG - RNF144A Frame_Shift_Del p.C120Sfs*59 0.40 TCGA-21-1083-01 2 75107421 75107421 G A HK2 Missense_Mutation p.R432Q 0.35 tolerated(0.12) possibly_damaging(0.596) TCGA-21-1083-01 2 75276802 75276802 G T TACR1 Missense_Mutation p.S327R 0.35 tolerated(0.56) benign(0.001) TCGA-21-1083-01 2 79254182 79254182 C A REG3G Missense_Mutation p.S73Y 0.37 deleterious(0) possibly_damaging(0.706) TCGA-21-1083-01 2 84518061 84518061 C A FUNDC2P2 RNA 0.40 TCGA-21-1083-01 2 85066425 85066425 G T TRABD2A Missense_Mutation p.T231K 0.39 deleterious(0) probably_damaging(0.968) TCGA-21-1083-01 2 85270717 85270717 G T KCMF1 Missense_Mutation p.G119C 0.33 deleterious(0.01) probably_damaging(0.957) TCGA-21-1083-01 2 86308803 86308803 C A POLR1A Nonsense_Mutation p.G282* 0.29 TCGA-21-1083-01 2 89161534 89161534 A T IGKC 5'Flank 0.35 TCGA-21-1083-01 2 89986879 89986879 G T IGKV2D-29 Nonsense_Mutation p.G54* 0.34 TCGA-21-1083-01 2 89986930 89986930 C A IGKV2D-29 Missense_Mutation p.L71I 0.22 deleterious(0.04) benign(0.412) TCGA-21-1083-01 2 90044224 90044224 C A IGKV2D-24 Missense_Mutation p.L49I 0.32 tolerated(0.14) benign(0.194) TCGA-21-1083-01 2 95522791 95522791 C A ANKRD20A8P RNA 0.33 TCGA-21-1083-01 3 101062692 101062692 T C SENP7 Silent p.E648E 0.18 TCGA-21-1083-01 3 108189594 108189594 C A MYH15 Missense_Mutation p.R465M 0.42 deleterious(0) possibly_damaging(0.883) TCGA-21-1083-01 3 108373033 108373033 A G DZIP3 Missense_Mutation p.Q692R 0.24 deleterious_low_confidence(0.01) benign(0.046) TCGA-21-1083-01 3 108392936 108392936 A T DZIP3 Missense_Mutation p.L867F 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-21-1083-01 3 11076287 11076287 G T SLC6A1 Missense_Mutation p.G533V 0.24 deleterious(0) probably_damaging(0.978) TCGA-21-1083-01 3 110852763 110852763 A G PVRL3 Missense_Mutation p.K451E 0.20 tolerated(0.15) probably_damaging(0.968) TCGA-21-1083-01 3 113114594 113114594 T A WDR52 Intron 0.23 TCGA-21-1083-01 3 113955993 113955993 C A ZNF80 5'UTR 0.32 TCGA-21-1083-01 3 118913081 118913081 G A UPK1B Missense_Mutation p.V162I 0.30 tolerated(0.07) benign(0.343) TCGA-21-1083-01 3 119367117 119367117 A G POPDC2 Silent p.S333S 0.21 TCGA-21-1083-01 3 120998749 120998749 G T STXBP5L Missense_Mutation p.D686Y 0.23 deleterious(0) possibly_damaging(0.882) TCGA-21-1083-01 3 121383223 121383223 G C GOLGB1 3'UTR 0.38 TCGA-21-1083-01 3 121416347 121416347 T C GOLGB1 Missense_Mutation p.K1008R 0.41 probably_damaging(0.999) TCGA-21-1083-01 3 124418875 124418875 A T AC080008.1 5'Flank 0.26 TCGA-21-1083-01 3 126261016 126261016 C G CHST13 Silent p.R207R 0.19 TCGA-21-1083-01 3 130313177 130313177 G T COL6A6 Missense_Mutation p.R1508L 0.17 tolerated(0.12) benign(0.007) TCGA-21-1083-01 3 131300462 131300462 A G CPNE4 Silent p.N276N 0.29 TCGA-21-1083-01 3 133166219 133166219 C A BFSP2 Missense_Mutation p.A183D 0.23 deleterious(0) possibly_damaging(0.905) TCGA-21-1083-01 3 133647007 133647007 C A C3orf36 3'UTR 0.24 TCGA-21-1083-01 3 138724784 138724784 G T PRR23A Missense_Mutation p.D109E 0.28 tolerated(0.24) probably_damaging(0.947) TCGA-21-1083-01 3 142751631 142751631 G A U2SURP Missense_Mutation p.R539K 0.22 tolerated(0.08) possibly_damaging(0.566) TCGA-21-1083-01 3 146322998 146322998 A T PLSCR5 Translation_Start_Site p.M1? 0.31 deleterious_low_confidence(0) benign(0.064) TCGA-21-1083-01 3 148601522 148601522 A G CPA3 Missense_Mutation p.I301V 0.46 tolerated(0.06) benign(0.153) TCGA-21-1083-01 3 156009875 156009875 C G KCNAB1 Intron 0.22 TCGA-21-1083-01 3 158428681 158428681 A C RARRES1 Silent p.S127S 0.10 TCGA-21-1083-01 3 164725698 164725698 C T SI Splice_Site p.X1423_splice 0.29 TCGA-21-1083-01 3 167401932 167401932 C G PDCD10 3'UTR 0.25 TCGA-21-1083-01 3 167750454 167750454 C A GOLIM4 Nonsense_Mutation p.E344* 0.17 TCGA-21-1083-01 3 169846635 169846635 A G PHC3 Missense_Mutation p.I542T 0.46 deleterious(0.01) possibly_damaging(0.514) TCGA-21-1083-01 3 170198611 170198611 G T SLC7A14 Missense_Mutation p.P487Q 0.45 tolerated(0.29) benign(0.209) TCGA-21-1083-01 3 184040733 184040733 G T EIF4G1 Silent p.V647V 0.42 TCGA-21-1083-01 3 184099756 184099756 C A CHRD Missense_Mutation p.S216Y 0.16 tolerated(0.07) possibly_damaging(0.815) TCGA-21-1083-01 3 186024713 186024713 G T DGKG Missense_Mutation p.L41I 0.30 deleterious(0.01) possibly_damaging(0.646) TCGA-21-1083-01 3 186459958 186459958 C G KNG1 Missense_Mutation p.I591M 0.28 deleterious(0) possibly_damaging(0.879) TCGA-21-1083-01 3 186954180 186954180 G C MASP1 Silent p.L493L 0.25 TCGA-21-1083-01 3 186954318 186954318 G C MASP1 Silent p.V447V 0.22 TCGA-21-1083-01 3 192516252 192516252 C A MB21D2 Nonsense_Mutation p.G467* 0.24 TCGA-21-1083-01 3 192517198 192517198 C A MB21D2 Silent p.R151R 0.29 TCGA-21-1083-01 3 194790754 194790754 C A XXYLT1 Missense_Mutation p.G291V 0.22 deleterious(0) probably_damaging(0.996) TCGA-21-1083-01 3 35763303 35763303 G T ARPP21 Missense_Mutation p.S367I 0.56 deleterious(0) probably_damaging(0.998) TCGA-21-1083-01 3 38135113 38135113 G T DLEC1 Missense_Mutation p.A592S 0.58 deleterious(0.01) possibly_damaging(0.835) TCGA-21-1083-01 3 46621504 46621504 G A TDGF1 Nonsense_Mutation p.W134* 0.54 TCGA-21-1083-01 3 50416389 50416389 G T CACNA2D2 Missense_Mutation p.N432K 0.52 deleterious(0.03) possibly_damaging(0.595) TCGA-21-1083-01 3 51989748 51989748 G T GPR62 Missense_Mutation p.G27V 0.33 tolerated(0.92) benign(0.007) TCGA-21-1083-01 3 67053995 67053995 A C KBTBD8 Missense_Mutation p.S202R 0.51 deleterious(0.02) benign(0.17) TCGA-21-1083-01 3 93781853 93781853 G T NSUN3 5'UTR 0.18 TCGA-21-1083-01 3 97806806 97806806 C G OR5AC2 Missense_Mutation p.P264A 0.25 deleterious(0) probably_damaging(0.926) TCGA-21-1083-01 4 10079433 10079433 C T WDR1 Missense_Mutation p.A505T 0.62 deleterious(0.02) benign(0.147) TCGA-21-1083-01 4 103722616 103722616 G A UBE2D3 Missense_Mutation p.S102F 0.44 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-21-1083-01 4 104512829 104512829 C A TACR3 Missense_Mutation p.M300I 0.62 deleterious(0) probably_damaging(0.993) TCGA-21-1083-01 4 115997913 115997913 C T NDST4 Missense_Mutation p.D94N 0.48 tolerated(0.08) probably_damaging(0.992) TCGA-21-1083-01 4 119163290 119163290 C A NDST3 Nonsense_Mutation p.Y795* 0.57 TCGA-21-1083-01 4 123833735 123833735 T A NUDT6 Missense_Mutation p.Q162H 0.56 deleterious(0) possibly_damaging(0.783) TCGA-21-1083-01 4 123855572 123855572 G C SPATA5 Missense_Mutation p.G276R 0.53 tolerated(0.09) benign(0.013) TCGA-21-1083-01 4 138442227 138442227 C A PCDH18 Missense_Mutation p.V1122L 0.47 deleterious(0.01) possibly_damaging(0.591) TCGA-21-1083-01 4 1388398 1388398 G C CRIPAK Silent p.P33P 0.60 TCGA-21-1083-01 4 155487029 155487029 G C FGB Missense_Mutation p.A62P 0.47 tolerated_low_confidence(0.07) benign(0.038) TCGA-21-1083-01 4 186260637 186260637 G C SNX25 Missense_Mutation p.M509I 0.52 tolerated(0.11) benign(0.01) TCGA-21-1083-01 4 186379601 186379601 C G CCDC110 Missense_Mutation p.D714H 0.48 deleterious(0) probably_damaging(1) TCGA-21-1083-01 4 187205249 187205249 G T F11 Missense_Mutation p.C380F 0.52 deleterious(0.01) probably_damaging(1) TCGA-21-1083-01 4 22749350 22749350 C A GBA3 Missense_Mutation p.Q240K 0.57 tolerated(0.1) benign(0.001) TCGA-21-1083-01 4 265798 265798 C T ZNF732 Missense_Mutation p.C283Y 0.72 deleterious(0.01) probably_damaging(0.985) TCGA-21-1083-01 4 59985 59985 T A ZNF595 Nonsense_Mutation p.C55* 0.06 TCGA-21-1083-01 4 62812695 62812695 C A LPHN3 Missense_Mutation p.A760D 0.54 deleterious(0.04) probably_damaging(0.93) TCGA-21-1083-01 4 65180422 65180422 G T TECRL Silent p.I165I 0.48 TCGA-21-1083-01 4 6863795 6863795 G T KIAA0232 Silent p.G562G 0.50 TCGA-21-1083-01 4 68964631 68964631 C A TMPRSS11F Missense_Mutation p.G46V 0.51 deleterious(0.01) possibly_damaging(0.647) TCGA-21-1083-01 4 68964632 68964632 C A TMPRSS11F Missense_Mutation p.G46C 0.50 deleterious(0) probably_damaging(0.936) TCGA-21-1083-01 4 69094506 69094506 G T TMPRSS11B Missense_Mutation p.T348K 0.56 tolerated(1) benign(0.01) TCGA-21-1083-01 4 71114883 71114883 G T CSN3 Missense_Mutation p.V86L 0.54 tolerated(0.42) unknown(0) TCGA-21-1083-01 4 91230306 91230306 G C CCSER1 Missense_Mutation p.D291H 0.37 tolerated(0.13) possibly_damaging(0.695) TCGA-21-1083-01 5 102440479 102440479 C A GIN1 Missense_Mutation p.K135N 0.32 deleterious(0) benign(0.365) TCGA-21-1083-01 5 1087054 1087054 C A SLC12A7 Silent p.G213G 0.61 TCGA-21-1083-01 5 110462570 110462570 G T WDR36 Missense_Mutation p.A949S 0.33 deleterious(0.01) probably_damaging(0.96) TCGA-21-1083-01 5 115152215 115152215 C A CDO1 5'UTR 0.33 TCGA-21-1083-01 5 115327971 115327971 C G AQPEP Missense_Mutation p.H419Q 0.29 deleterious(0) probably_damaging(1) TCGA-21-1083-01 5 115361677 115361677 G A AQPEP Silent p.L945L 0.40 TCGA-21-1083-01 5 118274979 118274979 T A DTWD2 Nonsense_Mutation p.K106* 0.31 TCGA-21-1083-01 5 118835145 118835145 C T HSD17B4 Missense_Mutation p.S394F 0.34 deleterious(0.01) possibly_damaging(0.669) TCGA-21-1083-01 5 125967497 125967497 A G C5orf48 Missense_Mutation p.Y24C 0.34 tolerated_low_confidence(0.18) benign(0.002) TCGA-21-1083-01 5 126860302 126860303 - C PRRC1 Frame_Shift_Ins p.L63Pfs*42 0.31 TCGA-21-1083-01 5 127626453 127626453 G T FBN2 Missense_Mutation p.P2139H 0.24 deleterious(0.02) possibly_damaging(0.722) TCGA-21-1083-01 5 128977639 128977639 T A ADAMTS19 Missense_Mutation p.C614S 0.29 deleterious(0) probably_damaging(0.999) TCGA-21-1083-01 5 129040070 129040070 G T ADAMTS19 Missense_Mutation p.G1094C 0.33 deleterious(0) probably_damaging(1) TCGA-21-1083-01 5 132440149 132440149 A G HSPA4 3'UTR 0.44 TCGA-21-1083-01 5 135692836 135692836 G C TRPC7 Missense_Mutation p.N80K 0.32 deleterious(0) probably_damaging(0.993) TCGA-21-1083-01 5 139193904 139193904 T G PSD2 Missense_Mutation p.L324R 0.36 deleterious(0) probably_damaging(1) TCGA-21-1083-01 5 140175745 140175745 C G PCDHA2 Missense_Mutation p.S399C 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.684) TCGA-21-1083-01 5 140182567 140182567 C T PCDHA3 Silent p.R595R 0.36 TCGA-21-1083-01 5 140188943 140188943 C A PCDHA4 Missense_Mutation p.S724Y 0.30 deleterious_low_confidence(0.01) probably_damaging(0.927) TCGA-21-1083-01 5 140229666 140229666 A T PCDHA9 Missense_Mutation p.E529V 0.35 deleterious_low_confidence(0) probably_damaging(0.944) TCGA-21-1083-01 5 140517171 140517171 G T PCDHB5 Missense_Mutation p.A719S 0.42 tolerated_low_confidence(0.14) benign(0.029) TCGA-21-1083-01 5 140530902 140530902 C A PCDHB6 Missense_Mutation p.P355Q 0.39 deleterious_low_confidence(0.01) benign(0.346) TCGA-21-1083-01 5 140594661 140594661 A G PCDHB13 Silent p.A322A 0.36 TCGA-21-1083-01 5 140755776 140755776 T G PCDHGA6 Missense_Mutation p.I709S 0.32 deleterious_low_confidence(0) benign(0.094) TCGA-21-1083-01 5 140768790 140768790 G C PCDHGB4 Missense_Mutation p.A447P 0.32 tolerated(0.61) benign(0.025) TCGA-21-1083-01 5 140789321 140789321 C T PCDHGB6 Missense_Mutation p.R518C 0.38 deleterious(0.05) possibly_damaging(0.852) TCGA-21-1083-01 5 141008855 141008855 G C HDAC3 Silent p.L165L 0.37 TCGA-21-1083-01 5 147902900 147902900 G A HTR4 Silent p.A121A 0.33 TCGA-21-1083-01 5 148695461 148695461 G T AFAP1L1 Silent p.R366R 0.31 TCGA-21-1083-01 5 150051936 150051936 G C MYOZ3 Missense_Mutation p.E153D 0.26 deleterious(0) probably_damaging(0.998) TCGA-21-1083-01 5 154284166 154284166 C A GEMIN5 Missense_Mutation p.A845S 0.22 tolerated(0.12) benign(0.098) TCGA-21-1083-01 5 156074493 156074493 C A SGCD Missense_Mutation p.F174L 0.58 deleterious(0.02) probably_damaging(0.95) TCGA-21-1083-01 5 156589744 156589744 G A FAM71B Missense_Mutation p.T511I 0.35 deleterious(0.03) possibly_damaging(0.486) TCGA-21-1083-01 5 157214806 157214806 T A CLINT1 Missense_Mutation p.M594L 0.32 tolerated(0.21) benign(0) TCGA-21-1083-01 5 158743781 158743781 C A IL12B Missense_Mutation p.C300F 0.31 deleterious(0.01) probably_damaging(0.979) TCGA-21-1083-01 5 161495109 161495109 C G GABRG2 Missense_Mutation p.P35R 0.37 tolerated_low_confidence(0.06) benign(0.091) TCGA-21-1083-01 5 16701273 16701273 C T MYO10 Silent p.Q1077Q 0.26 TCGA-21-1083-01 5 168620488 168620488 G A SLIT3 Silent p.T136T 0.37 TCGA-21-1083-01 5 172659784 172659784 C A NKX2-5 Missense_Mutation p.A255S 0.43 tolerated(0.08) possibly_damaging(0.515) TCGA-21-1083-01 5 176524351 176524351 C A FGFR4 Missense_Mutation p.Q738K 0.31 deleterious(0.01) benign(0.088) TCGA-21-1083-01 5 176827584 176827584 C A PFN3 5'UTR 0.34 TCGA-21-1083-01 5 176942929 176942929 C T DDX41 Splice_Site p.X145_splice 0.35 TCGA-21-1083-01 5 179132740 179132740 G T CANX Missense_Mutation p.A20S 0.34 tolerated(0.52) benign(0.09) TCGA-21-1083-01 5 179192709 179192709 G T MAML1 Missense_Mutation p.G233V 0.34 deleterious(0.01) probably_damaging(0.92) TCGA-21-1083-01 5 179301994 179301994 C A TBC1D9B Silent p.V698V 0.38 TCGA-21-1083-01 5 23526659 23526659 A G PRDM9 Missense_Mutation p.R488G 0.32 tolerated(0.25) benign(0.015) TCGA-21-1083-01 5 31983579 31983579 G T PDZD2 Missense_Mutation p.Q265H 0.34 deleterious(0.02) benign(0.352) TCGA-21-1083-01 5 33596073 33596073 G C ADAMTS12 Missense_Mutation p.Q874E 0.33 deleterious(0) possibly_damaging(0.673) TCGA-21-1083-01 5 35068895 35068895 A T PRLR Silent p.A257A 0.33 TCGA-21-1083-01 5 40958361 40958361 C A C7 Missense_Mutation p.A496E 0.28 tolerated(0.1) benign(0.086) TCGA-21-1083-01 5 41805673 41805673 C G OXCT1 Missense_Mutation p.M317I 0.36 deleterious(0.01) possibly_damaging(0.631) TCGA-21-1083-01 5 54674192 54674192 G C SKIV2L2 Missense_Mutation p.E621Q 0.47 tolerated(0.23) benign(0.209) TCGA-21-1083-01 5 73193834 73193834 A G ARHGEF28 Missense_Mutation p.S1297G 0.67 tolerated(0.39) benign(0.001) TCGA-21-1083-01 5 75581094 75581094 C A SV2C Missense_Mutation p.P341T 0.57 deleterious(0.02) possibly_damaging(0.828) TCGA-21-1083-01 5 7900217 7900217 A T MTRR 3'UTR 0.23 TCGA-21-1083-01 5 81283493 81283493 C G ATG10 Nonsense_Mutation p.S35* 0.56 TCGA-21-1083-01 5 9337907 9337907 G T SEMA5A Silent p.R48R 0.28 TCGA-21-1083-01 5 96237219 96237219 C G ERAP2 Missense_Mutation p.L528V 0.38 tolerated(0.56) benign(0.004) TCGA-21-1083-01 5 96349489 96349489 G T LNPEP Missense_Mutation p.D725Y 0.32 tolerated(1) possibly_damaging(0.61) TCGA-21-1083-01 6 102134052 102134052 C T GRIK2 Intron 0.15 TCGA-21-1083-01 6 10587068 10587068 G T GCNT2 Intron 0.34 TCGA-21-1083-01 6 109308696 109308696 T C SESN1 3'UTR 0.47 TCGA-21-1083-01 6 123130583 123130583 C A SMPDL3A 3'UTR 0.43 TCGA-21-1083-01 6 126203650 126203650 G T NCOA7 Missense_Mutation p.V218L 0.41 deleterious(0.02) possibly_damaging(0.612) TCGA-21-1083-01 6 127837095 127837095 G T SOGA3 Missense_Mutation p.S222Y 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.608) TCGA-21-1083-01 6 130761880 130761880 A G TMEM200A Missense_Mutation p.I105V 0.24 tolerated(0.35) benign(0) TCGA-21-1083-01 6 132967082 132967082 C T TAAR1 Missense_Mutation p.D21N 0.23 tolerated(0.5) benign(0.002) TCGA-21-1083-01 6 133045889 133045889 C A VNN3 3'UTR 0.48 TCGA-21-1083-01 6 133072438 133072438 G T VNN2 Missense_Mutation p.T349K 0.20 deleterious(0.05) benign(0.295) TCGA-21-1083-01 6 135239617 135239617 C G ALDH8A1 Missense_Mutation p.R467T 0.40 deleterious(0) probably_damaging(0.993) TCGA-21-1083-01 6 143929359 143929359 C T PHACTR2 5'UTR 0.51 TCGA-21-1083-01 6 145069569 145069569 G C UTRN Missense_Mutation p.E2709D 0.20 tolerated(0.16) benign(0.107) TCGA-21-1083-01 6 147694922 147694922 G A STXBP5 Missense_Mutation p.G1046E 0.23 deleterious(0) probably_damaging(0.994) TCGA-21-1083-01 6 152589218 152589218 G T SYNE1 Nonsense_Mutation p.S6263* 0.51 TCGA-21-1083-01 6 152774777 152774777 C A SYNE1 Nonsense_Mutation p.E991* 0.43 TCGA-21-1083-01 6 153078237 153078237 G - VIP Frame_Shift_Del p.G159Efs*10 0.29 TCGA-21-1083-01 6 154567886 154567886 T A IPCEF1 Missense_Mutation p.T29S 0.21 tolerated(0.22) benign(0.022) TCGA-21-1083-01 6 160113826 160113826 C T SOD2 Silent p.L31L 0.42 TCGA-21-1083-01 6 163985879 163985879 G T QKI Intron 0.27 TCGA-21-1083-01 6 165848781 165848781 C T PDE10A Missense_Mutation p.V161I 0.40 tolerated(1) benign(0.004) TCGA-21-1083-01 6 167728672 167728672 C G UNC93A Intron 0.42 TCGA-21-1083-01 6 20118703 20118703 C A MBOAT1 Missense_Mutation p.D326Y 0.59 deleterious(0) probably_damaging(0.98) TCGA-21-1083-01 6 24533853 24533853 G A ALDH5A1 Silent p.V520V 0.46 TCGA-21-1083-01 6 26124067 26124067 C A HIST1H2BC Silent p.A22A 0.55 TCGA-21-1083-01 6 28121877 28121877 G T ZKSCAN8 3'UTR 0.58 TCGA-21-1083-01 6 28269836 28269836 C G PGBD1 Missense_Mutation p.C735W 0.29 tolerated(0.18) probably_damaging(0.999) TCGA-21-1083-01 6 28499596 28499596 G A GPX5 Missense_Mutation p.V95I 0.59 tolerated(0.07) benign(0.073) TCGA-21-1083-01 6 28540836 28540836 A C SCAND3 Missense_Mutation p.S944A 0.50 tolerated(0.29) benign(0.427) TCGA-21-1083-01 6 29454557 29454557 C A MAS1L Missense_Mutation p.D375Y 0.56 deleterious_low_confidence(0) benign(0.083) TCGA-21-1083-01 6 30893126 30893126 C A VARS2 Silent p.R947R 0.08 TCGA-21-1083-01 6 32945987 32945987 A G BRD2 Missense_Mutation p.K555E 0.51 tolerated(0.34) benign(0.048) TCGA-21-1083-01 6 40400247 40400247 C A LRFN2 Silent p.L202L 0.55 TCGA-21-1083-01 6 43189438 43189438 A T CUL9 Missense_Mutation p.K2256N 0.34 tolerated(0.08) benign(0.383) TCGA-21-1083-01 6 43473001 43473001 G T TJAP1 Missense_Mutation p.S361I 0.27 deleterious(0) probably_damaging(0.999) TCGA-21-1083-01 6 499644 499644 C A EXOC2 Splice_Site p.X812_splice 0.26 TCGA-21-1083-01 6 499645 499645 C A EXOC2 Missense_Mutation p.E812D 0.26 deleterious(0.01) benign(0.206) TCGA-21-1083-01 6 49986654 49986654 C A DEFB110 3'UTR 0.35 TCGA-21-1083-01 6 50011483 50011483 A T DEFB112 Missense_Mutation p.S49R 0.28 deleterious(0) benign(0.001) TCGA-21-1083-01 6 51920501 51920501 C A PKHD1 Missense_Mutation p.D574Y 0.39 tolerated(1) benign(0.211) TCGA-21-1083-01 6 56417311 56417311 C T DST Missense_Mutation p.A2804T 0.35 benign(0.003) TCGA-21-1083-01 6 57467115 57467116 - T PRIM2 3'UTR 0.09 TCGA-21-1083-01 6 66204670 66204670 G T EYS Missense_Mutation p.Q212K 0.52 tolerated(0.08) possibly_damaging(0.702) TCGA-21-1083-01 6 70092823 70092823 G T BAI3 Missense_Mutation p.S1459I 0.25 deleterious(0.04) benign(0.002) TCGA-21-1083-01 6 74073372 74073372 C A KHDC3L Nonsense_Mutation p.S148* 0.28 TCGA-21-1083-01 6 74078981 74078981 C T OOEP Silent p.V106V 0.51 TCGA-21-1083-01 6 86181107 86181107 G A NT5E Missense_Mutation p.V239M 0.49 deleterious(0.03) probably_damaging(0.999) TCGA-21-1083-01 6 88050058 88050058 G C SMIM8 3'UTR 0.43 TCGA-21-1083-01 6 90499920 90499938 AGGAGGCTTTGTTCTACCT - MDN1 Frame_Shift_Del p.G347Sfs*36 0.47 TCGA-21-1083-01 7 100087052 100087052 G - NYAP1 Frame_Shift_Del p.V572Cfs*2 0.36 TCGA-21-1083-01 7 100348397 100348397 C A ZAN Missense_Mutation p.L467I 0.32 probably_damaging(0.993) TCGA-21-1083-01 7 100692158 100692158 C G MUC17 Missense_Mutation p.L4190V 0.29 unknown(0) TCGA-21-1083-01 7 100841536 100841536 G T MOGAT3 Missense_Mutation p.P202T 0.36 deleterious(0.04) possibly_damaging(0.777) TCGA-21-1083-01 7 103003185 103003185 C A PSMC2 Missense_Mutation p.P159T 0.31 deleterious(0.01) possibly_damaging(0.848) TCGA-21-1083-01 7 103180739 103180739 C A RELN Nonsense_Mutation p.E2279* 0.36 TCGA-21-1083-01 7 103234888 103234888 G T RELN Missense_Mutation p.F1197L 0.31 tolerated(0.14) benign(0.02) TCGA-21-1083-01 7 103629644 103629644 C A RELN Nonsense_Mutation p.E54* 0.26 TCGA-21-1083-01 7 117282557 117282557 G A CFTR Silent p.L1261L 0.32 TCGA-21-1083-01 7 127255060 127255060 C G PAX4 Silent p.R70R 0.30 TCGA-21-1083-01 7 135333167 135333167 A G NUP205 Missense_Mutation p.I1968V 0.48 tolerated(0.63) benign(0.001) TCGA-21-1083-01 7 137686451 137686451 T A CREB3L2 Translation_Start_Site p.M1? 0.26 tolerated_low_confidence(0.06) benign(0) TCGA-21-1083-01 7 141619217 141619217 G C OR9A4 Missense_Mutation p.R181P 0.36 tolerated(0.14) probably_damaging(0.986) TCGA-21-1083-01 7 142021334 142021334 C G TRBV5-1 Missense_Mutation p.S105W 0.30 deleterious(0) probably_damaging(1) TCGA-21-1083-01 7 142032003 142032003 G A TRBV7-1 5'Flank 0.48 TCGA-21-1083-01 7 149317098 149317098 G A ZNF767 RNA 0.42 TCGA-21-1083-01 7 149515131 149515131 C T SSPO RNA 0.40 TCGA-21-1083-01 7 150725557 150725557 A T ABCB8 5'UTR 0.22 TCGA-21-1083-01 7 1538784 1538784 C G INTS1 Missense_Mutation p.A322P 0.59 tolerated(0.19) benign(0.086) TCGA-21-1083-01 7 15651924 15651924 T C MEOX2 3'UTR 0.57 TCGA-21-1083-01 7 158454984 158454984 T C NCAPG2 Missense_Mutation p.K631E 0.34 deleterious(0.04) benign(0.005) TCGA-21-1083-01 7 158557407 158557407 G C ESYT2 Missense_Mutation p.I402M 0.31 deleterious(0.01) benign(0.192) TCGA-21-1083-01 7 23213795 23213795 G A KLHL7 Missense_Mutation p.E547K 0.58 tolerated(1) probably_damaging(0.912) TCGA-21-1083-01 7 23749882 23749882 G T STK31 5'UTR 0.50 TCGA-21-1083-01 7 31123862 31123862 C T ADCYAP1R1 Silent p.D145D 0.51 TCGA-21-1083-01 7 31378369 31378369 G T NEUROD6 Missense_Mutation p.P172T 0.52 deleterious(0) probably_damaging(0.975) TCGA-21-1083-01 7 34979801 34979801 C G DPY19L1 Missense_Mutation p.E537Q 0.61 tolerated(0.1) possibly_damaging(0.612) TCGA-21-1083-01 7 48411806 48411806 G T ABCA13 Silent p.L3615L 0.56 TCGA-21-1083-01 7 48411807 48411807 G T ABCA13 Missense_Mutation p.A3616S 0.57 possibly_damaging(0.734) TCGA-21-1083-01 7 4874689 4874689 C A RADIL Missense_Mutation p.G322V 0.73 deleterious(0) probably_damaging(0.964) TCGA-21-1083-01 7 64291948 64291948 G T ZNF138 Missense_Mutation p.G84C 0.34 tolerated_low_confidence(0.16) benign(0.046) TCGA-21-1083-01 7 70597894 70597894 G C WBSCR17 Missense_Mutation p.G36R 0.37 tolerated_low_confidence(0.32) benign(0.229) TCGA-21-1083-01 7 72849713 72849713 C A FZD9 Missense_Mutation p.A459D 0.42 deleterious(0) probably_damaging(0.999) TCGA-21-1083-01 7 77549684 77549684 G T PHTF2 Missense_Mutation p.G255C 0.35 tolerated(0.08) benign(0.003) TCGA-21-1083-01 7 81334976 81334976 C A HGF Missense_Mutation p.W617C 0.25 deleterious(0.02) probably_damaging(1) TCGA-21-1083-01 7 83614749 83614749 T C SEMA3A Intron 0.33 TCGA-21-1083-01 7 88389247 88389247 C A ZNF804B 5'UTR 0.31 TCGA-21-1083-01 7 92730460 92730460 T A SAMD9 3'UTR 0.29 TCGA-21-1083-01 7 92760683 92760683 G T SAMD9L Silent p.I1534I 0.33 TCGA-21-1083-01 7 92861654 92861654 G T CCDC132 5'UTR 0.30 TCGA-21-1083-01 7 94228254 94228254 A G SGCE Silent p.S362S 0.34 TCGA-21-1083-01 8 100791257 100791257 C A VPS13B Missense_Mutation p.Q2618K 0.04 tolerated(0.09) benign(0.042) TCGA-21-1083-01 8 103289250 103289250 T A UBR5 Silent p.L2153L 0.12 TCGA-21-1083-01 8 104898393 104898393 G T RIMS2 Silent p.T522T 0.12 TCGA-21-1083-01 8 105261767 105261767 C T RIMS2 Silent p.I1214I 0.42 TCGA-21-1083-01 8 105503053 105503053 A G LRP12 Missense_Mutation p.Y810H 0.49 tolerated_low_confidence(0.57) benign(0.001) TCGA-21-1083-01 8 106431411 106431411 G A ZFPM2 Missense_Mutation p.C27Y 0.07 tolerated(0.17) possibly_damaging(0.896) TCGA-21-1083-01 8 110447511 110447511 G T PKHD1L1 Missense_Mutation p.G1145W 0.51 deleterious(0.02) probably_damaging(0.928) TCGA-21-1083-01 8 110454247 110454247 G A PKHD1L1 Missense_Mutation p.G1406S 0.47 deleterious(0) probably_damaging(0.992) TCGA-21-1083-01 8 110984685 110984685 G A KCNV1 Missense_Mutation p.R265W 0.04 deleterious(0.02) benign(0.013) TCGA-21-1083-01 8 113249517 113249517 C T CSMD3 Missense_Mutation p.R3510K 0.53 tolerated(1) benign(0) TCGA-21-1083-01 8 113301727 113301727 G T CSMD3 Silent p.V3005V 0.17 TCGA-21-1083-01 8 113332154 113332154 T A CSMD3 Missense_Mutation p.T2408S 0.18 tolerated(0.06) benign(0.099) TCGA-21-1083-01 8 113529439 113529439 G T CSMD3 Missense_Mutation p.A1527E 0.43 deleterious(0.01) probably_damaging(0.971) TCGA-21-1083-01 8 113585856 113585856 G C CSMD3 Missense_Mutation p.L1306V 0.16 tolerated(0.16) benign(0.044) TCGA-21-1083-01 8 113650926 113650926 A G CSMD3 Silent p.S1175S 0.18 TCGA-21-1083-01 8 113668427 113668427 G T CSMD3 Missense_Mutation p.T987K 0.15 deleterious(0) probably_damaging(1) TCGA-21-1083-01 8 11414277 11414277 C A BLK Silent p.R295R 0.34 TCGA-21-1083-01 8 11995941 11995941 G T USP17L2 Missense_Mutation p.S110Y 0.31 deleterious(0) possibly_damaging(0.628) TCGA-21-1083-01 8 124221801 124221801 G C FAM83A 3'UTR 0.55 TCGA-21-1083-01 8 12863748 12863748 G T KIAA1456 Missense_Mutation p.V13L 0.29 deleterious(0) probably_damaging(0.994) TCGA-21-1083-01 8 141034060 141034060 G C TRAPPC9 Silent p.T989T 0.55 TCGA-21-1083-01 8 144809611 144809611 G C FAM83H Missense_Mutation p.P674A 0.62 deleterious(0) probably_damaging(0.998) TCGA-21-1083-01 8 144991513 144991513 C G PLEC Missense_Mutation p.R4296P 0.14 probably_damaging(0.997) TCGA-21-1083-01 8 144992018 144992018 C G PLEC Missense_Mutation p.V4128L 0.13 probably_damaging(0.999) TCGA-21-1083-01 8 145235110 145235110 G T MROH1 Silent p.A110A 0.54 TCGA-21-1083-01 8 1513875 1513875 C - DLGAP2 Frame_Shift_Del p.T341Pfs*13 0.29 TCGA-21-1083-01 8 2092879 2092879 G T MYOM2 Missense_Mutation p.A1458S 0.38 tolerated_low_confidence(0.06) possibly_damaging(0.672) TCGA-21-1083-01 8 29023227 29023227 C G KIF13B Missense_Mutation p.M407I 0.30 tolerated(0.16) benign(0.343) TCGA-21-1083-01 8 2910051 2910051 C A CSMD1 Missense_Mutation p.Q2531H 0.30 benign(0.012) TCGA-21-1083-01 8 36664925 36664925 G C KCNU1 Missense_Mutation p.E205Q 0.21 tolerated(0.4) probably_damaging(0.997) TCGA-21-1083-01 8 39521313 39521313 G T ADAM18 Splice_Site p.X411_splice 0.34 TCGA-21-1083-01 8 39521314 39521314 G T ADAM18 Nonsense_Mutation p.E411* 0.33 TCGA-21-1083-01 8 39695719 39695719 G T ADAM2 5'UTR 0.61 TCGA-21-1083-01 8 41580662 41580662 G T ANK1 Missense_Mutation p.P330Q 0.22 deleterious(0.03) probably_damaging(0.945) TCGA-21-1083-01 8 52320812 52320812 C A PXDNL Missense_Mutation p.Q1124H 0.15 deleterious(0) possibly_damaging(0.516) TCGA-21-1083-01 8 52359580 52359580 C A PXDNL Silent p.L503L 0.58 TCGA-21-1083-01 8 53573777 53573777 G A RB1CC1 Missense_Mutation p.L475F 0.06 tolerated(0.1) probably_damaging(0.999) TCGA-21-1083-01 8 59764280 59764280 C T TOX Missense_Mutation p.D166N 0.54 tolerated(0.4) benign(0.044) TCGA-21-1083-01 8 6357229 6357229 G C ANGPT2 3'UTR 0.80 TCGA-21-1083-01 8 63942740 63942740 G C GGH Missense_Mutation p.F87L 0.62 deleterious(0.03) probably_damaging(0.988) TCGA-21-1083-01 8 6681148 6681148 C G XKR5 RNA 0.56 TCGA-21-1083-01 8 67062068 67062068 A G TRIM55 Silent p.S264S 0.61 TCGA-21-1083-01 8 68107691 68107691 A G CSPP1 Missense_Mutation p.T1177A 0.05 deleterious(0.01) benign(0.054) TCGA-21-1083-01 8 72938268 72938268 C A TRPA1 Missense_Mutation p.W993L 0.13 deleterious(0.01) benign(0.33) TCGA-21-1083-01 8 77763970 77763970 A G ZFHX4 Missense_Mutation p.S1605G 0.58 benign(0.294) TCGA-21-1083-01 8 77765592 77765592 G T ZFHX4 Missense_Mutation p.R2145S 0.57 probably_damaging(0.98) TCGA-21-1083-01 8 77766185 77766185 C - ZFHX4 Frame_Shift_Del p.Q2344Kfs*48 0.40 TCGA-21-1083-01 8 77776777 77776777 C G ZFHX4 Missense_Mutation p.I3609M 0.16 benign(0.344) TCGA-21-1083-01 8 87242533 87242533 T A SLC7A13 5'UTR 0.62 TCGA-21-1083-01 8 88885206 88885206 C A DCAF4L2 Missense_Mutation p.V332L 0.16 deleterious(0) possibly_damaging(0.77) TCGA-21-1083-01 8 88886272 88886272 C A DCAF4L2 5'UTR 0.57 TCGA-21-1083-01 8 94800077 94800077 A T TMEM67 Missense_Mutation p.H473L 0.18 tolerated(0.35) benign(0.034) TCGA-21-1083-01 8 95854714 95854714 G C INTS8 Missense_Mutation p.E420Q 0.44 tolerated(0.11) probably_damaging(0.955) TCGA-21-1083-01 8 98943502 98943502 G T MATN2 Missense_Mutation p.R155L 0.16 deleterious(0) probably_damaging(1) TCGA-21-1083-01 9 100258105 100258105 C T TDRD7 Silent p.T1079T 0.52 TCGA-21-1083-01 9 105767642 105767642 G C CYLC2 Missense_Mutation p.K243N 0.50 deleterious(0.01) unknown(0) TCGA-21-1083-01 9 107457183 107457183 C A OR13D1 Missense_Mutation p.P161T 0.52 deleterious(0) probably_damaging(1) TCGA-21-1083-01 9 120474942 120474942 A T TLR4 Missense_Mutation p.H179L 0.47 tolerated(0.4) possibly_damaging(0.534) TCGA-21-1083-01 9 120476998 120476998 T G TLR4 3'UTR 0.29 TCGA-21-1083-01 9 125659778 125659778 T A RC3H2 Missense_Mutation p.Q4L 0.55 deleterious(0) possibly_damaging(0.838) TCGA-21-1083-01 9 131071974 131071974 C T TRUB2 Missense_Mutation p.R284Q 0.38 tolerated(1) benign(0) TCGA-21-1083-01 9 13109953 13109953 T A MPDZ Missense_Mutation p.L1951F 0.55 tolerated(0.05) probably_damaging(0.984) TCGA-21-1083-01 9 131105497 131105497 T A SLC27A4 Missense_Mutation p.L29Q 0.50 tolerated(0.09) possibly_damaging(0.823) TCGA-21-1083-01 9 131671497 131671497 G A LRRC8A Missense_Mutation p.R685H 0.56 tolerated(0.2) probably_damaging(0.997) TCGA-21-1083-01 9 139089508 139089508 G T LHX3 Missense_Mutation p.P291H 0.67 tolerated(0.07) benign(0.181) TCGA-21-1083-01 9 139390869 139390869 G C NOTCH1 Missense_Mutation p.A2441G 0.50 tolerated(0.36) benign(0.066) TCGA-21-1083-01 9 140196122 140196122 C T NRARP Missense_Mutation p.A87T 0.53 deleterious(0) probably_damaging(0.989) TCGA-21-1083-01 9 140611489 140611489 G T EHMT1 Missense_Mutation p.S166I 0.56 deleterious_low_confidence(0.02) benign(0.209) TCGA-21-1083-01 9 21187197 21187197 G A IFNA4 Missense_Mutation p.L112F 0.18 deleterious(0) probably_damaging(0.979) TCGA-21-1083-01 9 33675947 33675947 C G PTENP1 RNA 0.58 TCGA-21-1083-01 9 43627045 43627045 G C SPATA31A6 Missense_Mutation p.L548V 0.54 tolerated(0.19) benign(0.021) TCGA-21-1083-01 9 86530316 86530316 C G KIF27 Missense_Mutation p.C64S 0.56 tolerated(0.12) probably_damaging(0.913) TCGA-21-1083-01 9 90501365 90501365 C G SPATA31E1 Missense_Mutation p.Q655E 0.60 tolerated(0.13) benign(0.142) TCGA-21-1083-01 X 100169992 100169992 C T XKRX Missense_Mutation p.D229N 0.52 deleterious(0) probably_damaging(0.997) TCGA-21-1083-01 X 101095535 101095535 C G NXF5 Missense_Mutation p.E212Q 0.54 deleterious(0.04) benign(0.234) TCGA-21-1083-01 X 102339302 102339302 C T NXF3 Missense_Mutation p.D107N 0.52 tolerated(0.17) benign(0.17) TCGA-21-1083-01 X 134995089 134995089 G A SAGE1 3'UTR 0.46 TCGA-21-1083-01 X 139587107 139587107 G T SOX3 Missense_Mutation p.P40Q 0.57 deleterious_low_confidence(0) possibly_damaging(0.686) TCGA-21-1083-01 X 139866369 139866369 C A CDR1 Missense_Mutation p.V55L 0.55 tolerated(0.43) benign(0.209) TCGA-21-1083-01 X 139866370 139866370 G T CDR1 Missense_Mutation p.D54E 0.56 deleterious(0.02) possibly_damaging(0.753) TCGA-21-1083-01 X 140953260 140953260 C T MAGEC3 Missense_Mutation p.R43W 0.46 deleterious_low_confidence(0) benign(0.008) TCGA-21-1083-01 X 140984981 140984981 G - MAGEC3 Frame_Shift_Del p.A480Qfs*4 0.36 TCGA-21-1083-01 X 144905830 144905830 C A SLITRK2 Missense_Mutation p.F629L 0.46 deleterious(0.04) probably_damaging(0.998) TCGA-21-1083-01 X 146295051 146295051 C A MIR513A1 RNA 0.50 TCGA-21-1083-01 X 149809814 149809814 C G MTM1 Missense_Mutation p.L201V 0.59 tolerated(1) benign(0.011) TCGA-21-1083-01 X 153281998 153281998 T G IRAK1 Missense_Mutation p.S376R 0.61 tolerated(0.07) probably_damaging(0.992) TCGA-21-1083-01 X 16754307 16754307 C T SYAP1 Nonsense_Mutation p.Q105* 0.54 TCGA-21-1083-01 X 17744793 17744793 C T NHS Missense_Mutation p.S835L 0.53 deleterious(0) probably_damaging(0.989) TCGA-21-1083-01 X 17745227 17745227 C A NHS Missense_Mutation p.P980T 0.65 deleterious(0) probably_damaging(0.928) TCGA-21-1083-01 X 25031097 25031097 G A ARX Nonsense_Mutation p.Q339* 0.47 TCGA-21-1083-01 X 2933343 2933343 C T ARSH Missense_Mutation p.L225F 0.74 deleterious(0.01) probably_damaging(0.99) TCGA-21-1083-01 X 3229157 3229157 C A MXRA5 Missense_Mutation p.V2363L 0.49 tolerated(0.05) benign(0.412) TCGA-21-1083-01 X 37029311 37029311 T A FAM47C Missense_Mutation p.L943H 0.55 deleterious(0) probably_damaging(0.976) TCGA-21-1083-01 X 37913514 37913514 T A SYTL5 Silent p.T56T 0.69 TCGA-21-1083-01 X 39933697 39933697 G C BCOR Missense_Mutation p.S301C 0.31 deleterious(0.02) possibly_damaging(0.806) TCGA-21-1083-01 X 41010264 41010264 A G USP9X Missense_Mutation p.I573V 0.52 deleterious(0.01) benign(0.119) TCGA-21-1083-01 X 44928977 44928977 G T KDM6A Missense_Mutation p.G693W 0.40 deleterious(0) possibly_damaging(0.721) TCGA-21-1083-01 X 49850985 49850985 G A CLCN5 Missense_Mutation p.V339I 0.67 deleterious(0.02) probably_damaging(0.995) TCGA-21-1083-01 X 53239726 53239726 G A KDM5C Missense_Mutation p.S539L 0.65 deleterious(0) possibly_damaging(0.793) TCGA-21-1083-01 X 54950953 54950953 G T TRO Missense_Mutation p.A436S 0.44 tolerated(0.21) unknown(0) TCGA-21-1083-01 X 64744916 64744916 T A LAS1L Missense_Mutation p.D324V 0.28 deleterious(0) probably_damaging(0.979) TCGA-21-1083-01 X 6995320 6995320 C A HDHD1 Missense_Mutation p.D174Y 0.56 tolerated(0.57) benign(0.14) TCGA-21-1083-01 X 73964148 73964148 C A KIAA2022 Missense_Mutation p.G82C 0.58 tolerated_low_confidence(0.08) possibly_damaging(0.698) TCGA-21-1083-01 X 86773201 86773201 C A KLHL4 Missense_Mutation p.A102E 0.50 tolerated_low_confidence(0.21) benign(0.015) TCGA-21-1083-01 X 91133050 91133050 C T PCDH11X Missense_Mutation p.A604V 0.52 tolerated(0.6) benign(0.163) TCGA-21-1083-01 X 91134236 91134236 G T PCDH11X Silent p.T999T 0.41 TCGA-21-1083-01 X 91873506 91873506 C T PCDH11X Missense_Mutation p.T1204I 0.53 tolerated_low_confidence(0.31) benign(0.013) TCGA-21-5782-01 10 104112241 104112241 A G GBF1 Missense_Mutation p.T184A 0.15 tolerated(0.31) benign(0.109) TCGA-21-5782-01 10 119014827 119014830 GGAA - SLC18A2 Frame_Shift_Del p.K248Rfs*37 0.09 TCGA-21-5782-01 10 123239480 123239480 G T FGFR2 Missense_Mutation p.T787K 0.26 deleterious(0) benign(0.379) TCGA-21-5782-01 10 124268201 124268201 G A HTRA1 Silent p.L345L 0.25 TCGA-21-5782-01 10 135440182 135440182 G T FRG2B Missense_Mutation p.P22H 0.11 tolerated(0.06) probably_damaging(0.967) TCGA-21-5782-01 10 17271466 17271466 C A VIM Missense_Mutation p.F15L 0.25 deleterious(0) possibly_damaging(0.787) TCGA-21-5782-01 10 27112098 27112098 C T ABI1 Missense_Mutation p.R85K 0.23 tolerated(0.23) benign(0.169) TCGA-21-5782-01 10 32317465 32317465 T G KIF5B Missense_Mutation p.K539T 0.20 tolerated(0.29) benign(0.42) TCGA-21-5782-01 10 33015720 33015720 A G C10ORF68 Silent p.Q183Q 0.11 TCGA-21-5782-01 10 33199357 33199357 T C ITGB1 Missense_Mutation p.N653S 0.32 tolerated(0.44) benign(0.01) TCGA-21-5782-01 10 43016518 43016518 C A ZNF37BP RNA 0.27 TCGA-21-5782-01 10 75277120 75277120 G C USP54 Missense_Mutation p.Q1022E 0.16 tolerated_low_confidence(0.11) benign(0.08) TCGA-21-5782-01 10 7844259 7844259 G T ATP5C1 Missense_Mutation p.D222Y 0.13 deleterious(0) possibly_damaging(0.872) TCGA-21-5782-01 10 95399935 95399935 G C PDE6C Missense_Mutation p.E531Q 0.22 tolerated(0.14) probably_damaging(0.968) TCGA-21-5782-01 10 97599541 97599541 C G ENTPD1 Missense_Mutation p.Q92E 0.16 tolerated(0.16) benign(0.277) TCGA-21-5782-01 11 100141928 100141928 G T CNTN5 Nonsense_Mutation p.G757* 0.28 TCGA-21-5782-01 11 100920673 100920673 T C PGR Silent p.L825L 0.21 TCGA-21-5782-01 11 103029721 103029721 C G DYNC2H1 Nonsense_Mutation p.S1448* 0.22 TCGA-21-5782-01 11 103029734 103029734 T A DYNC2H1 Silent p.S1452S 0.21 TCGA-21-5782-01 11 103029735 103029735 C T DYNC2H1 Missense_Mutation p.H1453Y 0.21 probably_damaging(0.948) TCGA-21-5782-01 11 117097964 117097964 G T PCSK7 Missense_Mutation p.N226K 0.10 deleterious(0) probably_damaging(0.984) TCGA-21-5782-01 11 117241984 117241984 G C CEP164 Missense_Mutation p.K318N 0.20 tolerated(0.14) benign(0.048) TCGA-21-5782-01 11 118765034 118765034 G T CXCR5 Missense_Mutation p.A261S 0.18 deleterious(0.02) probably_damaging(0.953) TCGA-21-5782-01 11 1269123 1269123 C - MUC5B Frame_Shift_Del p.S3673Afs*24 0.21 TCGA-21-5782-01 11 128680809 128680809 G C FLI1 Missense_Mutation p.G429R 0.16 deleterious(0.02) benign(0.305) TCGA-21-5782-01 11 40136891 40136891 C A LRRC4C Missense_Mutation p.D318Y 0.15 deleterious(0) benign(0.204) TCGA-21-5782-01 11 44289133 44289133 C A ALX4 Nonsense_Mutation p.E273* 0.35 TCGA-21-5782-01 11 4566688 4566688 G T OR52M1 Missense_Mutation p.G90C 0.24 deleterious(0.02) benign(0.077) TCGA-21-5782-01 11 55595023 55595023 C G OR5L2 Missense_Mutation p.T110S 0.25 tolerated(0.16) benign(0.038) TCGA-21-5782-01 11 55735343 55735343 C T OR10AG1 Silent p.T199T 0.25 TCGA-21-5782-01 11 61196668 61196668 C G CPSF7 Missense_Mutation p.E57Q 0.16 tolerated(0.17) probably_damaging(0.989) TCGA-21-5782-01 11 62285078 62285078 G A AHNAK Missense_Mutation p.S5604F 0.30 probably_damaging(0.994) TCGA-21-5782-01 11 654013 654013 C A DEAF1 Missense_Mutation p.E514D 0.29 deleterious(0) possibly_damaging(0.844) TCGA-21-5782-01 11 65827324 65827324 C G SF3B2 Silent p.L491L 0.27 TCGA-21-5782-01 11 66191496 66191496 C A NPAS4 Missense_Mutation p.P379T 0.21 tolerated(0.74) benign(0.001) TCGA-21-5782-01 11 67804071 67804071 G T NDUFS8 3'UTR 0.17 TCGA-21-5782-01 11 74013511 74013511 C G P4HA3 Missense_Mutation p.G157A 0.19 deleterious(0) probably_damaging(1) TCGA-21-5782-01 11 76372075 76372075 T A LRRC32 Missense_Mutation p.I188F 0.20 deleterious(0) probably_damaging(0.999) TCGA-21-5782-01 11 76969559 76969559 C A GDPD4 Missense_Mutation p.D246Y 0.19 deleterious(0) probably_damaging(1) TCGA-21-5782-01 11 78380188 78380188 C G TENM4 Missense_Mutation p.G2401A 0.32 deleterious(0) probably_damaging(0.998) TCGA-21-5782-01 11 83252873 83252873 C T DLG2 Missense_Mutation p.D657N 0.19 deleterious(0) probably_damaging(0.996) TCGA-21-5782-01 11 93494785 93494785 C A C11orf54 Nonsense_Mutation p.Y243* 0.17 TCGA-21-5782-01 11 96125203 96125203 G T JRKL Nonsense_Mutation p.E464* 0.30 TCGA-21-5782-01 12 100729640 100729640 G C SCYL2 Missense_Mutation p.E661Q 0.18 tolerated(0.56) benign(0.04) TCGA-21-5782-01 12 100774544 100774544 A T SLC17A8 Missense_Mutation p.Q56L 0.18 tolerated(0.37) benign(0) TCGA-21-5782-01 12 100813829 100813829 T A SLC17A8 Missense_Mutation p.N554K 0.14 tolerated(0.22) possibly_damaging(0.493) TCGA-21-5782-01 12 108154332 108154332 G A PRDM4 5'UTR 0.30 TCGA-21-5782-01 12 109017554 109017554 G A SELPLG Missense_Mutation p.A193V 0.20 tolerated(0.13) unknown(0) TCGA-21-5782-01 12 115120793 115120793 C T TBX3 Silent p.A71A 0.35 TCGA-21-5782-01 12 115120862 115120862 G T TBX3 Silent p.P48P 0.26 TCGA-21-5782-01 12 1225120 1225120 C T ERC1 Missense_Mutation p.S497L 0.16 deleterious(0) probably_damaging(0.98) TCGA-21-5782-01 12 124496735 124496735 G T ZNF664 Missense_Mutation p.R15I 0.23 tolerated(0.11) benign(0.061) TCGA-21-5782-01 12 14996076 14996076 G A ART4 5'UTR 0.20 TCGA-21-5782-01 12 15131001 15131001 C A PDE6H Missense_Mutation p.P19T 0.17 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-21-5782-01 12 15131002 15131002 C G PDE6H Missense_Mutation p.P19R 0.17 tolerated_low_confidence(0.08) probably_damaging(0.999) TCGA-21-5782-01 12 21329714 21329714 A T SLCO1B1 Missense_Mutation p.R122W 0.16 deleterious(0) probably_damaging(0.998) TCGA-21-5782-01 12 29671421 29671421 C T TMTC1 Missense_Mutation p.E670K 0.14 deleterious(0.02) probably_damaging(0.997) TCGA-21-5782-01 12 32459057 32459057 G A BICD1 Splice_Site p.X335_splice 0.24 TCGA-21-5782-01 12 344326 344326 G C SLC6A13 Missense_Mutation p.T254R 0.29 deleterious(0) probably_damaging(0.939) TCGA-21-5782-01 12 43944794 43944794 G T ADAMTS20 Nonsense_Mutation p.S124* 0.24 TCGA-21-5782-01 12 4700464 4700464 G A DYRK4 Missense_Mutation p.E40K 0.24 deleterious(0.02) benign(0.111) TCGA-21-5782-01 12 48372394 48372394 C T COL2A1 Missense_Mutation p.D961N 0.27 unknown(0) TCGA-21-5782-01 12 49065628 49065628 C A KANSL2 Missense_Mutation p.K221N 0.25 deleterious(0) probably_damaging(0.987) TCGA-21-5782-01 12 50349271 50349271 G C AQP2 Missense_Mutation p.E232D 0.14 tolerated(0.25) benign(0.003) TCGA-21-5782-01 12 53227729 53227729 C G KRT79 Missense_Mutation p.G106R 0.20 deleterious(0.02) benign(0.083) TCGA-21-5782-01 12 56552215 56552215 C T MYL6 Intron 0.25 TCGA-21-5782-01 12 56720625 56720625 G T PAN2 Silent p.A346A 0.04 TCGA-21-5782-01 12 63544531 63544531 C A AVPR1A Missense_Mutation p.S29I 0.14 deleterious(0.01) benign(0.039) TCGA-21-5782-01 12 6650740 6650740 C A IFFO1 Missense_Mutation p.M508I 0.17 deleterious(0.04) probably_damaging(0.981) TCGA-21-5782-01 12 72167786 72167786 C T RAB21 Silent p.I125I 0.16 TCGA-21-5782-01 12 89992912 89992912 C G ATP2B1 Silent p.L1111L 0.17 TCGA-21-5782-01 12 9311032 9311032 A G PZP Missense_Mutation p.L1093P 0.37 deleterious(0) possibly_damaging(0.88) TCGA-21-5782-01 12 98941352 98941352 G T TMPO Missense_Mutation p.A252S 0.14 deleterious(0) probably_damaging(0.997) TCGA-21-5782-01 12 99201645 99201645 A C ANKS1B Intron 0.31 TCGA-21-5782-01 13 20763693 20763693 G T GJB2 Missense_Mutation p.L10M 0.29 deleterious(0.01) possibly_damaging(0.875) TCGA-21-5782-01 13 23898647 23898647 C T SGCG Silent p.T281T 0.19 TCGA-21-5782-01 13 25280474 25280474 C T ATP12A Missense_Mutation p.T687I 0.23 deleterious(0.04) possibly_damaging(0.791) TCGA-21-5782-01 13 29599365 29599365 T C MTUS2 Missense_Mutation p.L187S 0.14 deleterious(0) benign(0.018) TCGA-21-5782-01 13 32363281 32363281 C A RXFP2 Missense_Mutation p.P366T 0.22 tolerated(0.05) benign(0.011) TCGA-21-5782-01 13 32930628 32930628 G - BRCA2 Frame_Shift_Del p.R2500Sfs*24 0.26 TCGA-21-5782-01 13 39264179 39264179 G T FREM2 Missense_Mutation p.V900F 0.44 tolerated(0.08) benign(0.273) TCGA-21-5782-01 13 96642288 96642288 G C UGGT2 Missense_Mutation p.F290L 0.19 tolerated(0.9) benign(0.022) TCGA-21-5782-01 13 97485053 97485053 G C HS6ST3 Missense_Mutation p.Q339H 0.20 deleterious(0.05) possibly_damaging(0.836) TCGA-21-5782-01 14 103802201 103802201 T C EIF5 Missense_Mutation p.S2P 0.29 deleterious(0) probably_damaging(0.972) TCGA-21-5782-01 14 105410942 105410942 C G AHNAK2 Missense_Mutation p.D3616H 0.18 probably_damaging(0.934) TCGA-21-5782-01 14 20978688 20978688 G T RNASE10 Missense_Mutation p.G20W 0.14 deleterious_low_confidence(0) probably_damaging(1) TCGA-21-5782-01 14 21526420 21526420 G A RNASE8 Silent p.K123K 0.48 TCGA-21-5782-01 14 22265983 22265983 G A TRAV8-1 Missense_Mutation p.S89N 0.12 tolerated(0.31) benign(0.017) TCGA-21-5782-01 14 23816673 23816673 G A SLC22A17 Silent p.N404N 0.45 TCGA-21-5782-01 14 37739624 37739624 G T MIPOL1 Splice_Site p.X130_splice 0.15 TCGA-21-5782-01 14 39583492 39583492 G T GEMIN2 5'UTR 0.25 TCGA-21-5782-01 14 42360510 42360510 G T LRFN5 Missense_Mutation p.M481I 0.26 tolerated(0.16) benign(0) TCGA-21-5782-01 14 55510557 55510557 G T SOCS4 Silent p.T266T 0.17 TCGA-21-5782-01 14 57857946 57857946 G T NAA30 Nonsense_Mutation p.E91* 0.14 TCGA-21-5782-01 14 62462942 62462942 G C SYT16 Missense_Mutation p.D69H 0.22 deleterious_low_confidence(0.04) benign(0.01) TCGA-21-5782-01 14 73464678 73464678 A G ZFYVE1 Missense_Mutation p.F277L 0.12 deleterious(0) probably_damaging(0.971) TCGA-21-5782-01 14 76455252 76455252 C G IFT43 Missense_Mutation p.Q27E 0.12 tolerated(0.13) possibly_damaging(0.492) TCGA-21-5782-01 14 89060995 89060995 G A ZC3H14 Intron 0.13 TCGA-21-5782-01 14 93125655 93125655 G A RIN3 Missense_Mutation p.D726N 0.17 deleterious(0) probably_damaging(0.993) TCGA-21-5782-01 14 94044262 94044262 T C UNC79 Silent p.S585S 0.21 TCGA-21-5782-01 14 94139791 94139791 T G UNC79 Missense_Mutation p.L2106R 0.21 deleterious(0) probably_damaging(0.999) TCGA-21-5782-01 14 94752574 94752574 C T SERPINA10 Silent p.P338P 0.18 TCGA-21-5782-01 14 95934295 95934295 G A SYNE3 Nonsense_Mutation p.Q52* 0.23 TCGA-21-5782-01 14 96134839 96134839 G T TCL6 Intron 0.26 TCGA-21-5782-01 14 96706782 96706782 C T BDKRB2 Silent p.N39N 0.21 TCGA-21-5782-01 15 25321137 25321137 T G SNORD116-11 RNA 0.21 TCGA-21-5782-01 15 40628970 40628970 C G C15orf52 Missense_Mutation p.D307H 0.23 deleterious(0) probably_damaging(0.957) TCGA-21-5782-01 15 45983289 45983289 G T SQRDL 3'UTR 0.22 TCGA-21-5782-01 15 49882182 49882182 T A FAM227B Missense_Mutation p.H43L 0.13 tolerated(0.63) benign(0.076) TCGA-21-5782-01 15 54007544 54007544 C A WDR72 Silent p.R120R 0.14 TCGA-21-5782-01 15 54707198 54707198 C T UNC13C Silent p.N1622N 0.21 TCGA-21-5782-01 15 75141031 75141031 G C SCAMP2 Missense_Mutation p.S215C 0.23 deleterious(0) probably_damaging(0.998) TCGA-21-5782-01 15 80469898 80469898 G T FAH Silent p.A311A 0.25 TCGA-21-5782-01 15 93482893 93482893 G A CHD2 Missense_Mutation p.D213N 0.27 tolerated(0.14) benign(0.035) TCGA-21-5782-01 15 97327381 97327381 A C SPATA8 Splice_Site p.X30_splice 0.27 TCGA-21-5782-01 16 16278887 16278887 G A ABCC6 Silent p.A624A 0.24 TCGA-21-5782-01 16 20554480 20554480 T G ACSM2B Silent p.A462A 0.13 TCGA-21-5782-01 16 21328221 21328221 C T CRYM-AS1 RNA 0.22 TCGA-21-5782-01 16 23641656 23641656 G C PALB2 Missense_Mutation p.L607V 0.10 deleterious(0.03) benign(0.109) TCGA-21-5782-01 16 31142524 31142524 G C KAT8 3'UTR 0.24 TCGA-21-5782-01 16 31473871 31473871 C T ARMC5 Missense_Mutation p.R335W 0.29 deleterious(0) probably_damaging(0.982) TCGA-21-5782-01 16 50741806 50741806 G C NOD2 Missense_Mutation p.G194A 0.26 tolerated(0.61) possibly_damaging(0.53) TCGA-21-5782-01 16 56792532 56792532 G T NUP93 Nonsense_Mutation p.E88* 0.21 TCGA-21-5782-01 16 61687416 61687416 C A CDH8 3'UTR 0.22 TCGA-21-5782-01 16 66977219 66977219 G T CES2 Nonsense_Mutation p.E544* 0.30 TCGA-21-5782-01 16 67683724 67683724 C T RLTPR Silent p.D645D 0.18 TCGA-21-5782-01 16 68390996 68390996 T A PRMT7 Missense_Mutation p.Y650N 0.13 deleterious(0.01) possibly_damaging(0.86) TCGA-21-5782-01 16 74497378 74497378 C G GLG1 Splice_Site p.X890_splice 0.25 TCGA-21-5782-01 16 89211672 89211672 C A ACSF3 Intron 0.27 TCGA-21-5782-01 17 10366280 10366280 G A MYH4 Missense_Mutation p.L304F 0.38 deleterious(0) probably_damaging(0.978) TCGA-21-5782-01 17 26906445 26906445 C T SPAG5 Silent p.Q981Q 0.30 TCGA-21-5782-01 17 27449231 27449231 T G MYO18A Missense_Mutation p.N347T 0.33 deleterious(0.01) benign(0) TCGA-21-5782-01 17 28499605 28499605 G T NSRP1 Missense_Mutation p.A54S 0.23 tolerated(0.11) benign(0.049) TCGA-21-5782-01 17 34072636 34072636 G T GAS2L2 Missense_Mutation p.S627Y 0.24 deleterious(0.01) possibly_damaging(0.844) TCGA-21-5782-01 17 39658978 39658978 G T KRT13 Silent p.L328L 0.27 TCGA-21-5782-01 17 39777062 39777062 C A KRT17 Missense_Mutation p.G344W 0.18 deleterious(0) probably_damaging(0.95) TCGA-21-5782-01 17 41246589 41246589 C G BRCA1 Missense_Mutation p.R320T 0.19 deleterious(0) probably_damaging(0.996) TCGA-21-5782-01 17 41365217 41365217 G A TMEM106A Missense_Mutation p.D53N 0.27 tolerated(0.5) benign(0.002) TCGA-21-5782-01 17 4996231 4996231 G C ZFP3 Missense_Mutation p.E478Q 0.31 tolerated(0.14) possibly_damaging(0.601) TCGA-21-5782-01 17 5983988 5983988 C A WSCD1 Missense_Mutation p.P4T 0.21 tolerated(0.38) probably_damaging(0.999) TCGA-21-5782-01 17 61432617 61432617 G A TANC2 Silent p.Q742Q 0.22 TCGA-21-5782-01 17 62175585 62175585 C T ERN1 Missense_Mutation p.S24N 0.27 tolerated(0.14) benign(0.009) TCGA-21-5782-01 17 62825281 62825281 G C RNU7-115P 5'Flank 0.29 TCGA-21-5782-01 17 6531662 6531662 C A KIAA0753 Nonsense_Mutation p.E165* 0.27 TCGA-21-5782-01 17 7578265 7578265 A C TP53 Missense_Mutation p.I195S 0.24 deleterious(0) probably_damaging(1) TCGA-21-5782-01 17 76116838 76116838 C A TMC6 Missense_Mutation p.Q537H 0.26 tolerated(0.06) benign(0.289) TCGA-21-5782-01 17 79803439 79803439 T C P4HB Missense_Mutation p.T453A 0.24 tolerated(0.51) benign(0) TCGA-21-5782-01 17 79910847 79910847 T A NOTUM Missense_Mutation p.N494I 0.25 deleterious(0) benign(0.395) TCGA-21-5782-01 17 80708298 80708298 G C FN3K Missense_Mutation p.K199N 0.41 tolerated(0.08) benign(0.12) TCGA-21-5782-01 17 8076845 8076845 A C TMEM107 3'Flank 0.28 TCGA-21-5782-01 18 24496168 24496172 TGATT - CHST9 3'UTR 0.14 TCGA-21-5782-01 18 2920816 2920816 C G LPIN2 Missense_Mutation p.G836R 0.10 deleterious(0) probably_damaging(1) TCGA-21-5782-01 18 2945925 2945925 G C LPIN2 Intron 0.15 TCGA-21-5782-01 18 43262473 43262473 G A SLC14A2 Missense_Mutation p.D918N 0.17 deleterious_low_confidence(0.02) benign(0.372) TCGA-21-5782-01 18 46145966 46145966 C T CTIF Silent p.S10S 0.56 TCGA-21-5782-01 19 10124126 10124126 A G RDH8 Missense_Mutation p.S5G 0.09 deleterious_low_confidence(0) benign(0.302) TCGA-21-5782-01 19 10394882 10394882 T C ICAM1 Missense_Mutation p.S271P 0.23 tolerated(0.23) possibly_damaging(0.779) TCGA-21-5782-01 19 11304442 11304442 C T KANK2 Missense_Mutation p.R105H 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-21-5782-01 19 12814277 12814277 G A TNPO2 Missense_Mutation p.A725V 0.20 deleterious(0) possibly_damaging(0.673) TCGA-21-5782-01 19 15479110 15479110 C A AKAP8 Missense_Mutation p.D366Y 0.15 deleterious(0) possibly_damaging(0.526) TCGA-21-5782-01 19 22155187 22155187 A C ZNF208 Missense_Mutation p.H883Q 0.27 deleterious(0) unknown(0) TCGA-21-5782-01 19 2216567 2216567 G T DOT1L Missense_Mutation p.Q737H 0.25 deleterious_low_confidence(0.05) probably_damaging(0.989) TCGA-21-5782-01 19 23159638 23159638 A T ZNF728 Missense_Mutation p.H167Q 0.31 tolerated(0.07) benign(0.069) TCGA-21-5782-01 19 2934680 2934691 TGCCACACTTAG - ZNF77 In_Frame_Del p.T145_G148del 0.17 TCGA-21-5782-01 19 31767946 31767946 G A TSHZ3 Missense_Mutation p.S918L 0.16 deleterious(0.05) benign(0.146) TCGA-21-5782-01 19 33698454 33698454 C T LRP3 Silent p.S762S 0.31 TCGA-21-5782-01 19 35231910 35231910 A G ZNF181 Silent p.K208K 0.10 TCGA-21-5782-01 19 36330159 36330159 T A NPHS1 Missense_Mutation p.Q1030L 0.28 tolerated(0.67) benign(0.006) TCGA-21-5782-01 19 37676402 37676402 T G ZNF585B Silent p.T679T 0.15 TCGA-21-5782-01 19 38876086 38876086 G T GGN Missense_Mutation p.R606S 0.17 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-21-5782-01 19 43092999 43092999 A T CEACAM8 Missense_Mutation p.C299S 0.19 deleterious(0) probably_damaging(0.997) TCGA-21-5782-01 19 4333705 4333705 C A STAP2 Nonsense_Mutation p.E95* 0.27 TCGA-21-5782-01 19 43998909 43998909 T C PHLDB3 Missense_Mutation p.H365R 0.29 tolerated(0.54) benign(0.003) TCGA-21-5782-01 19 46318944 46318944 C T SYMPK Silent p.A1233A 0.17 TCGA-21-5782-01 19 46331129 46331129 G A SYMPK Missense_Mutation p.A678V 0.22 tolerated(0.14) benign(0.022) TCGA-21-5782-01 19 46627157 46627157 G A IGFL3 Silent p.S112S 0.23 TCGA-21-5782-01 19 47969318 47969318 C T SLC8A2 Missense_Mutation p.E115K 0.19 deleterious(0.02) probably_damaging(0.936) TCGA-21-5782-01 19 50365447 50365447 G A PNKP Missense_Mutation p.P374L 0.29 deleterious(0) probably_damaging(0.987) TCGA-21-5782-01 19 55086198 55086198 G C LILRA2 Missense_Mutation p.G118A 0.12 deleterious(0) probably_damaging(0.963) TCGA-21-5782-01 19 55494355 55494355 T G NLRP2 Missense_Mutation p.L430R 0.28 deleterious(0) probably_damaging(0.994) TCGA-21-5782-01 19 57089577 57089577 G T ZNF470 Nonsense_Mutation p.E594* 0.19 TCGA-21-5782-01 19 57678812 57678812 G T DUXA 5'Flank 0.22 TCGA-21-5782-01 19 57909797 57909797 G T ZNF548 Splice_Site p.X60_splice 0.21 TCGA-21-5782-01 19 58084835 58084835 T G ZNF416 Missense_Mutation p.E146A 0.31 deleterious(0.02) possibly_damaging(0.78) TCGA-21-5782-01 19 610331 610331 T - HCN2 Frame_Shift_Del p.Y504Mfs*54 0.26 TCGA-21-5782-01 19 6190546 6190546 T A ACSBG2 Intron 0.21 TCGA-21-5782-01 19 6678018 6678018 C G C3 Missense_Mutation p.G1623R 0.21 deleterious(0.04) probably_damaging(0.953) TCGA-21-5782-01 19 7117363 7117363 C T INSR Missense_Mutation p.E1285K 0.22 deleterious(0.01) possibly_damaging(0.686) TCGA-21-5782-01 19 7913882 7913882 C T EVI5L Missense_Mutation p.P135S 0.10 tolerated(0.08) probably_damaging(1) TCGA-21-5782-01 1 109793561 109793561 C T CELSR2 Missense_Mutation p.P287L 0.26 deleterious(0) probably_damaging(1) TCGA-21-5782-01 1 114442820 114442820 G A AP4B1 Missense_Mutation p.L274F 0.20 tolerated(0.28) possibly_damaging(0.679) TCGA-21-5782-01 1 11577558 11577558 C T PTCHD2 Silent p.L596L 0.27 TCGA-21-5782-01 1 116245587 116245587 C G CASQ2 Missense_Mutation p.K323N 0.29 tolerated(1) probably_damaging(0.948) TCGA-21-5782-01 1 12082420 12082420 C T MIIP Missense_Mutation p.S128L 0.14 tolerated(0.16) benign(0.17) TCGA-21-5782-01 1 12304675 12304675 G A VPS13D Splice_Site p.X149_splice 0.24 TCGA-21-5782-01 1 14108529 14108529 G A PRDM2 Silent p.S1413S 0.28 TCGA-21-5782-01 1 152188200 152188200 A T HRNR Missense_Mutation p.S1969T 0.04 unknown(0) TCGA-21-5782-01 1 152192012 152192012 G C HRNR Missense_Mutation p.S698C 0.17 unknown(0) TCGA-21-5782-01 1 152328900 152328900 G T FLG2 Silent p.G454G 0.21 TCGA-21-5782-01 1 155726809 155726809 C G GON4L Missense_Mutation p.K1819N 0.26 deleterious(0) possibly_damaging(0.607) TCGA-21-5782-01 1 155736446 155736446 C G GON4L Missense_Mutation p.E940Q 0.24 deleterious(0.05) probably_damaging(0.979) TCGA-21-5782-01 1 157737253 157737253 C A FCRL2 Missense_Mutation p.Q310H 0.19 deleterious(0.02) benign(0.226) TCGA-21-5782-01 1 158226602 158226602 G A CD1A Missense_Mutation p.G211S 0.24 tolerated(0.11) probably_damaging(0.941) TCGA-21-5782-01 1 158226603 158226603 G T CD1A Missense_Mutation p.G211V 0.26 deleterious(0) probably_damaging(0.965) TCGA-21-5782-01 1 158576474 158576474 C A OR10Z1 Silent p.L82L 0.20 TCGA-21-5782-01 1 161047464 161047464 G C PVRL4 Missense_Mutation p.S170C 0.30 deleterious(0) probably_damaging(0.997) TCGA-21-5782-01 1 16577630 16577630 G C FBXO42 Missense_Mutation p.I563M 0.11 deleterious_low_confidence(0) benign(0.091) TCGA-21-5782-01 1 16952965 16952965 G A CROCCP2 3'Flank 0.09 TCGA-21-5782-01 1 175046886 175046886 G T TNN Missense_Mutation p.R111L 0.24 deleterious(0.02) probably_damaging(1) TCGA-21-5782-01 1 186280799 186280799 G C TPR 3'UTR 0.18 TCGA-21-5782-01 1 186880434 186880434 C T PLA2G4A Silent p.F157F 0.18 TCGA-21-5782-01 1 196952141 196952141 C A CFHR5 Missense_Mutation p.P62H 0.23 deleterious(0) probably_damaging(0.995) TCGA-21-5782-01 1 200635670 200635670 C A DDX59 Missense_Mutation p.G67C 0.18 tolerated_low_confidence(0.12) benign(0.005) TCGA-21-5782-01 1 20141492 20141492 C A RNF186 Nonsense_Mutation p.E35* 0.24 TCGA-21-5782-01 1 209785331 209785331 G A CAMK1G Silent p.L370L 0.14 TCGA-21-5782-01 1 218607479 218607483 TTGTG C TGFB2 Frame_Shift_Del p.V217Afs*14 0.21 TCGA-21-5782-01 1 22332296 22332296 G A CELA3A Intron 0.12 TCGA-21-5782-01 1 224377500 224377500 G A DEGS1 Missense_Mutation p.A102T 0.24 tolerated(0.06) benign(0.014) TCGA-21-5782-01 1 226253396 226253396 G T H3F3A Missense_Mutation p.Q56H 0.27 deleterious_low_confidence(0.01) benign(0.024) TCGA-21-5782-01 1 22816893 22816893 C G ZBTB40 Missense_Mutation p.S151C 0.20 deleterious(0.01) possibly_damaging(0.511) TCGA-21-5782-01 1 229588372 229588372 C A NUP133 Missense_Mutation p.R1000L 0.21 tolerated(0.09) probably_damaging(0.982) TCGA-21-5782-01 1 236306222 236306222 C G GPR137B Missense_Mutation p.F100L 0.21 tolerated(0.1) probably_damaging(0.999) TCGA-21-5782-01 1 241031964 241031964 C A RGS7 Missense_Mutation p.D178Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-21-5782-01 1 241031965 241031965 C A RGS7 Silent p.V177V 0.29 TCGA-21-5782-01 1 247464220 247464220 C T ZNF496 Silent p.E455E 0.19 TCGA-21-5782-01 1 247875527 247875527 G C OR6F1 Missense_Mutation p.F177L 0.24 deleterious(0) probably_damaging(0.974) TCGA-21-5782-01 1 248084542 248084542 A T OR2T8 Missense_Mutation p.T75S 0.17 deleterious(0.01) benign(0.334) TCGA-21-5782-01 1 248402872 248402872 C A OR2M4 Silent p.I214I 0.27 TCGA-21-5782-01 1 248512452 248512452 C A OR14C36 Missense_Mutation p.Q126K 0.21 tolerated(0.46) benign(0.02) TCGA-21-5782-01 1 248790376 248790376 A T OR2T11 Missense_Mutation p.S18R 0.09 deleterious(0.04) benign(0.028) TCGA-21-5782-01 1 2523025 2523025 C G MMEL1 Missense_Mutation p.K737N 0.20 deleterious(0.05) probably_damaging(0.991) TCGA-21-5782-01 1 27190313 27190313 G A SFN Missense_Mutation p.D204N 0.16 deleterious_low_confidence(0) benign(0.005) TCGA-21-5782-01 1 27876980 27876980 G C AHDC1 Silent p.R549R 0.16 TCGA-21-5782-01 1 34258116 34258132 GAGCTTGATCACCTAGG - CSMD2 Splice_Site p.X443_splice 0.23 TCGA-21-5782-01 1 35909835 35909835 C A KIAA0319L Silent p.A861A 0.38 TCGA-21-5782-01 1 36203671 36203671 C A CLSPN Nonsense_Mutation p.E1196* 0.39 TCGA-21-5782-01 1 38174116 38174116 G T CDCA8 3'UTR 0.26 TCGA-21-5782-01 1 38227557 38227557 C T EPHA10 Missense_Mutation p.E124K 0.18 deleterious(0) probably_damaging(0.994) TCGA-21-5782-01 1 43787098 43787098 C T TIE1 Silent p.A1060A 0.24 TCGA-21-5782-01 1 43818205 43818205 C G MPL Nonsense_Mutation p.S557* 0.19 TCGA-21-5782-01 1 43891796 43891796 A G SZT2 Missense_Mutation p.Q1006R 0.53 deleterious(0) possibly_damaging(0.888) TCGA-21-5782-01 1 46211819 46211819 G A IPP Nonsense_Mutation p.Q89* 0.16 TCGA-21-5782-01 1 55279497 55279497 C G C1orf177 Missense_Mutation p.P258R 0.12 tolerated(0.05) possibly_damaging(0.724) TCGA-21-5782-01 1 75038884 75038884 C T C1orf173 Missense_Mutation p.R837K 0.27 tolerated(0.37) benign(0.001) TCGA-21-5782-01 1 7826535 7826535 A G CAMTA1 Missense_Mutation p.K1669R 0.20 deleterious_low_confidence(0.01) benign(0.026) TCGA-21-5782-01 1 90179638 90179638 G A LRRC8C Missense_Mutation p.M503I 0.29 tolerated(0.84) benign(0) TCGA-21-5782-01 1 95448643 95448643 G T ALG14 Silent p.R214R 0.15 TCGA-21-5782-01 1 9661475 9661475 A T TMEM201 Missense_Mutation p.T307S 0.28 deleterious(0.01) possibly_damaging(0.676) TCGA-21-5782-01 20 1532540 1532540 T A SIRPD Missense_Mutation p.K73I 0.18 deleterious(0) probably_damaging(0.957) TCGA-21-5782-01 20 1629992 1629992 C T SIRPG Missense_Mutation p.G46R 0.19 deleterious(0.01) probably_damaging(0.985) TCGA-21-5782-01 20 20392785 20392785 C T RALGAPA2 Missense_Mutation p.E1835K 0.24 deleterious(0) probably_damaging(0.977) TCGA-21-5782-01 20 36625155 36625155 G A TTI1 Silent p.D998D 0.22 TCGA-21-5782-01 20 3675336 3675336 G A SIGLEC1 Missense_Mutation p.A973V 0.21 deleterious(0) probably_damaging(0.992) TCGA-21-5782-01 20 37203678 37203678 G C RALGAPB 3'UTR 0.40 TCGA-21-5782-01 20 4713082 4713082 C G PRNT Missense_Mutation p.D81H 0.33 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-21-5782-01 20 47249125 47249125 G A PREX1 Silent p.I1440I 0.29 TCGA-21-5782-01 20 52570017 52570017 C A BCAS1 Missense_Mutation p.R545I 0.23 deleterious(0) probably_damaging(0.973) TCGA-21-5782-01 20 54573783 54573783 C T CBLN4 Missense_Mutation p.V146I 0.13 tolerated(0.11) benign(0.26) TCGA-21-5782-01 20 60856156 60856156 C A OSBPL2 Silent p.V239V 0.24 TCGA-21-5782-01 20 62724187 62724187 C G OPRL1 Silent p.L38L 0.18 TCGA-21-5782-01 21 31654736 31654736 G C KRTAP24-1 Missense_Mutation p.T172S 0.18 tolerated(1) benign(0.059) TCGA-21-5782-01 21 40670440 40670440 C A BRWD1 Missense_Mutation p.L89F 0.17 deleterious(0) probably_damaging(0.986) TCGA-21-5782-01 21 45825915 45825915 C T TRPM2 Missense_Mutation p.R929W 0.18 deleterious(0) probably_damaging(0.999) TCGA-21-5782-01 21 47531447 47531447 G C COL6A2 Missense_Mutation p.Q19H 0.19 tolerated_low_confidence(1) benign(0) TCGA-21-5782-01 21 47531448 47531448 G T COL6A2 Missense_Mutation p.A20S 0.19 tolerated(0.11) benign(0.007) TCGA-21-5782-01 22 17072241 17072241 G C CCT8L2 Missense_Mutation p.F400L 0.12 tolerated(0.29) benign(0.119) TCGA-21-5782-01 22 22322090 22322090 T C TOP3B Splice_Site p.X247_splice 0.20 TCGA-21-5782-01 22 24836814 24836814 G T ADORA2A Missense_Mutation p.R199L 0.24 deleterious(0.02) benign(0.05) TCGA-21-5782-01 22 30572094 30572094 T C HORMAD2 Missense_Mutation p.C288R 0.24 tolerated(0.54) benign(0) TCGA-21-5782-01 22 31042935 31042935 C G SLC35E4 Missense_Mutation p.L324V 0.23 tolerated(0.06) benign(0.083) TCGA-21-5782-01 22 38165342 38165342 G T TRIOBP Missense_Mutation p.G2270V 0.29 tolerated(0.07) probably_damaging(0.937) TCGA-21-5782-01 22 40657837 40657837 G A TNRC6B Silent p.V39V 0.20 TCGA-21-5782-01 22 50728004 50728004 G A PLXNB2 Missense_Mutation p.A337V 0.32 tolerated(0.13) benign(0.006) TCGA-21-5782-01 2 1168792 1168792 T A SNTG2 Missense_Mutation p.S172T 0.04 tolerated(0.17) benign(0.285) TCGA-21-5782-01 2 130877988 130877988 C A POTEF Missense_Mutation p.C34F 0.35 deleterious_low_confidence(0) benign(0.446) TCGA-21-5782-01 2 132021760 132021760 A G POTEE Missense_Mutation p.D911G 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-21-5782-01 2 135712275 135712275 G T CCNT2 3'UTR 0.30 TCGA-21-5782-01 2 153575011 153575011 C T ARL6IP6 5'UTR 0.24 TCGA-21-5782-01 2 164466745 164466745 T A FIGN Missense_Mutation p.T533S 0.28 tolerated(0.12) benign(0.007) TCGA-21-5782-01 2 166188042 166188042 G A SCN2A Silent p.T784T 0.13 TCGA-21-5782-01 2 166188044 166188044 A C SCN2A Missense_Mutation p.E785A 0.14 tolerated(0.2) benign(0.039) TCGA-21-5782-01 2 167141191 167141191 C G SCN9A Missense_Mutation p.E582D 0.22 tolerated(0.29) benign(0.113) TCGA-21-5782-01 2 168105274 168105274 A C XIRP2 Missense_Mutation p.T2458P 0.23 benign(0.056) TCGA-21-5782-01 2 179414381 179414381 A T TTN Missense_Mutation p.Y30690N 0.20 TCGA-21-5782-01 2 179590301 179590301 A G TTN Missense_Mutation p.I6877T 0.25 TCGA-21-5782-01 2 179613430 179613430 G T TTN Intron 0.21 TCGA-21-5782-01 2 182766615 182766615 G T SSFA2 Nonsense_Mutation p.E279* 0.26 TCGA-21-5782-01 2 198949409 198949409 G C PLCL1 Missense_Mutation p.D390H 0.22 deleterious(0) probably_damaging(1) TCGA-21-5782-01 2 207146627 207146627 G T ZDBF2 Silent p.L18L 0.33 TCGA-21-5782-01 2 217329374 217329374 A G SMARCAL1 Missense_Mutation p.K709E 0.04 deleterious(0) probably_damaging(0.999) TCGA-21-5782-01 2 219346935 219346935 G A USP37 Nonsense_Mutation p.R565* 0.22 TCGA-21-5782-01 2 220103844 220103844 C T GLB1L Silent p.K344K 0.20 TCGA-21-5782-01 2 220346038 220346038 C T SPEG Silent p.I1794I 0.22 TCGA-21-5782-01 2 227662074 227662074 C A IRS1 Nonsense_Mutation p.E461* 0.21 TCGA-21-5782-01 2 228243943 228243943 G A TM4SF20 Silent p.S14S 0.23 TCGA-21-5782-01 2 228882946 228882946 G T SPHKAP Missense_Mutation p.A875D 0.20 tolerated(0.08) possibly_damaging(0.564) TCGA-21-5782-01 2 228883251 228883261 TGGAGAGCTGC - SPHKAP Frame_Shift_Del p.S770Tfs*2 0.24 TCGA-21-5782-01 2 228884531 228884531 A T SPHKAP Missense_Mutation p.S347T 0.24 tolerated(0.7) benign(0.004) TCGA-21-5782-01 2 230659957 230659957 G C TRIP12 Missense_Mutation p.S1227R 0.23 deleterious(0) possibly_damaging(0.702) TCGA-21-5782-01 2 232660884 232660884 C G COPS7B Missense_Mutation p.I132M 0.23 deleterious(0) possibly_damaging(0.642) TCGA-21-5782-01 2 240982175 240982175 G T PRR21 Silent p.P75P 0.30 TCGA-21-5782-01 2 241826474 241826474 C G C2orf54 3'UTR 0.21 TCGA-21-5782-01 2 242741313 242741313 C A GAL3ST2 Missense_Mutation p.N79K 0.11 deleterious(0.01) benign(0.39) TCGA-21-5782-01 2 3727473 3727473 G T ALLC Missense_Mutation p.V63F 0.15 deleterious(0) possibly_damaging(0.756) TCGA-21-5782-01 2 39224462 39224462 C G SOS1 Missense_Mutation p.E966Q 0.17 deleterious(0) probably_damaging(0.995) TCGA-21-5782-01 2 44513255 44513255 G T SLC3A1 Missense_Mutation p.D284Y 0.22 deleterious(0) probably_damaging(0.994) TCGA-21-5782-01 2 70933427 70933427 C A ADD2 Silent p.A38A 0.34 TCGA-21-5782-01 2 79384760 79384760 C A REG3A Missense_Mutation p.W133L 0.17 deleterious(0) probably_damaging(1) TCGA-21-5782-01 2 89339943 89339943 G T IGKV1-12 Silent p.I43I 0.17 TCGA-21-5782-01 2 98206031 98206031 G A ANKRD36B RNA 0.25 TCGA-21-5782-01 3 101375038 101375038 G A ZBTB11 Missense_Mutation p.H701Y 0.22 deleterious(0) probably_damaging(0.988) TCGA-21-5782-01 3 10268100 10268100 C T IRAK2 Nonsense_Mutation p.R419* 0.28 TCGA-21-5782-01 3 10413681 10413681 C A ATP2B2 Missense_Mutation p.G491C 0.40 deleterious(0) possibly_damaging(0.794) TCGA-21-5782-01 3 108107918 108107918 G T MYH15 Missense_Mutation p.R1832S 0.14 deleterious(0.02) benign(0.012) TCGA-21-5782-01 3 111927206 111927206 C T SLC9C1 Missense_Mutation p.R602H 0.22 tolerated(0.49) benign(0.002) TCGA-21-5782-01 3 113184568 113184568 G A SPICE1 Missense_Mutation p.H407Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-21-5782-01 3 113286437 113286437 C T SIDT1 Missense_Mutation p.S132L 0.15 tolerated(0.72) benign(0.019) TCGA-21-5782-01 3 118649069 118649069 G T IGSF11 Silent p.R36R 0.26 TCGA-21-5782-01 3 124165652 124165652 A C KALRN Missense_Mutation p.T1156P 0.18 deleterious(0) possibly_damaging(0.721) TCGA-21-5782-01 3 129020813 129020813 G T HMCES Missense_Mutation p.G219V 0.39 deleterious(0) probably_damaging(0.996) TCGA-21-5782-01 3 138739131 138739131 C A PRR23B Missense_Mutation p.D125Y 0.34 deleterious(0) probably_damaging(0.911) TCGA-21-5782-01 3 150916843 150916843 C T GPR171 Missense_Mutation p.D111N 0.18 deleterious(0.02) probably_damaging(0.996) TCGA-21-5782-01 3 152553988 152553988 C G P2RY1 Missense_Mutation p.I139M 0.16 deleterious(0) probably_damaging(0.998) TCGA-21-5782-01 3 159711632 159711632 G C IL12A Splice_Site p.X202_splice 0.05 TCGA-21-5782-01 3 160219892 160219892 C T KPNA4 Silent p.%3D 0.13 TCGA-21-5782-01 3 164908292 164908292 C T SLITRK3 Silent p.G109G 0.11 TCGA-21-5782-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.51 tolerated(0.11) possibly_damaging(0.529) TCGA-21-5782-01 3 183777983 183777983 G C HTR3C Missense_Mutation p.R396T 0.13 tolerated(0.2) benign(0.082) TCGA-21-5782-01 3 184039394 184039394 C A EIF4G1 Missense_Mutation p.S348Y 0.06 deleterious(0.03) possibly_damaging(0.522) TCGA-21-5782-01 3 184429387 184429387 G - MAGEF1 Frame_Shift_Del p.R75Gfs*2 0.38 TCGA-21-5782-01 3 185169078 185169078 G C MAP3K13 Missense_Mutation p.Q391H 0.14 tolerated(0.19) benign(0.03) TCGA-21-5782-01 3 185641673 185641673 C A TRA2B Missense_Mutation p.A145S 0.14 tolerated(0.53) benign(0.089) TCGA-21-5782-01 3 186038260 186038260 A T DGKG 5'UTR 0.05 TCGA-21-5782-01 3 186503789 186503789 G A EIF4A2 Missense_Mutation p.V156I 0.04 tolerated(0.27) benign(0.003) TCGA-21-5782-01 3 186940936 186940936 C A MASP1 Missense_Mutation p.R596S 0.16 tolerated(0.68) benign(0.003) TCGA-21-5782-01 3 195937563 195937563 G A ZDHHC19 Silent p.I64I 0.16 TCGA-21-5782-01 3 51308303 51308303 G A DOCK3 Missense_Mutation p.V805M 0.07 deleterious(0.03) probably_damaging(0.98) TCGA-21-5782-01 3 51452138 51452138 A G VPRBP Silent p.N830N 0.27 TCGA-21-5782-01 3 93603660 93603660 T C PROS1 Silent p.Q468Q 0.18 TCGA-21-5782-01 4 100534143 100534143 C A MTTP Missense_Mutation p.S688Y 0.25 deleterious(0.05) probably_damaging(0.98) TCGA-21-5782-01 4 106155402 106155403 - TCTCTC TET2 In_Frame_Ins p.L103_S104dup 0.12 TCGA-21-5782-01 4 134073621 134073621 C A PCDH10 Silent p.R776R 0.35 TCGA-21-5782-01 4 15839788 15839788 G A CD38 Missense_Mutation p.S220N 0.22 deleterious(0.03) probably_damaging(1) TCGA-21-5782-01 4 177089850 177089850 G T WDR17 Missense_Mutation p.M1045I 0.12 tolerated(0.19) benign(0.024) TCGA-21-5782-01 4 2274986 2274986 G T ZFYVE28 Missense_Mutation p.A746D 0.30 deleterious(0) possibly_damaging(0.897) TCGA-21-5782-01 4 25419243 25419243 A G ANAPC4 Missense_Mutation p.D694G 0.24 tolerated(0.3) benign(0.114) TCGA-21-5782-01 4 56737265 56737265 A G EXOC1 Splice_Site p.X278_splice 0.18 TCGA-21-5782-01 4 5868476 5868476 C G CRMP1 Missense_Mutation p.R130P 0.36 deleterious(0) possibly_damaging(0.696) TCGA-21-5782-01 4 70462038 70462038 G T UGT2A1 Nonsense_Mutation p.S309* 0.24 TCGA-21-5782-01 4 71201608 71201608 T A CABS1 Silent p.T284T 0.28 TCGA-21-5782-01 4 81124467 81124467 C T PRDM8 Silent p.T617T 0.30 TCGA-21-5782-01 4 82126129 82126129 C A PRKG2 Missense_Mutation p.A25S 0.17 tolerated(0.66) benign(0.001) TCGA-21-5782-01 4 84342756 84342756 C G HELQ Missense_Mutation p.G970A 0.14 tolerated(0.46) benign(0.001) TCGA-21-5782-01 4 85750243 85750243 G A WDFY3 Silent p.L290L 0.23 TCGA-21-5782-01 4 89358063 89358063 G A HERC6 Silent p.L808L 0.19 TCGA-21-5782-01 5 137223106 137223106 A G MYOT 3'UTR 0.26 TCGA-21-5782-01 5 137777071 137777071 C T REEP2 Intron 0.25 TCGA-21-5782-01 5 137802653 137802653 C T EGR1 Missense_Mutation p.S172F 0.33 deleterious(0.02) benign(0.418) TCGA-21-5782-01 5 140242977 140242977 C G AC005609.1 5'UTR 0.50 TCGA-21-5782-01 5 140562948 140562948 G T PCDHB16 Nonsense_Mutation p.G272* 0.38 TCGA-21-5782-01 5 140562949 140562949 G T PCDHB16 Missense_Mutation p.G272V 0.39 deleterious_low_confidence(0) probably_damaging(1) TCGA-21-5782-01 5 169410135 169410135 T A DOCK2 Missense_Mutation p.Y955N 0.25 deleterious(0) probably_damaging(0.963) TCGA-21-5782-01 5 175110160 175110160 G C HRH2 5'UTR 0.21 TCGA-21-5782-01 5 176638561 176638561 G C NSD1 Missense_Mutation p.R1054T 0.26 deleterious_low_confidence(0) benign(0.142) TCGA-21-5782-01 5 176884733 176884733 G A DBN1 Missense_Mutation p.S603L 0.23 deleterious(0) probably_damaging(0.999) TCGA-21-5782-01 5 178410091 178410091 G T GRM6 Silent p.I752I 0.09 TCGA-21-5782-01 5 178559295 178559295 A T ADAMTS2 Missense_Mutation p.F742L 0.12 tolerated(0.38) benign(0.013) TCGA-21-5782-01 5 21854841 21854841 A G CDH12 Silent p.S195S 0.15 TCGA-21-5782-01 5 31526589 31526589 T C DROSHA Missense_Mutation p.M151V 0.50 tolerated_low_confidence(0.97) benign(0) TCGA-21-5782-01 5 33535065 33535065 C G ADAMTS12 Missense_Mutation p.K1493N 0.27 tolerated(0.07) benign(0.134) TCGA-21-5782-01 5 35861032 35861032 C T IL7R Missense_Mutation p.S54L 0.13 tolerated(0.22) benign(0.044) TCGA-21-5782-01 5 5146538 5146538 C G ADAMTS16 Silent p.S157S 0.12 TCGA-21-5782-01 5 5209307 5209307 G T ADAMTS16 Missense_Mutation p.C518F 0.15 deleterious(0) probably_damaging(0.996) TCGA-21-5782-01 5 5239838 5239838 C A ADAMTS16 Missense_Mutation p.R775S 0.14 tolerated(0.11) benign(0.235) TCGA-21-5782-01 5 65349907 65349907 G C ERBB2IP Missense_Mutation p.D921H 0.33 deleterious(0) probably_damaging(0.999) TCGA-21-5782-01 5 67593511 67593511 C G PIK3R1 3'UTR 0.33 TCGA-21-5782-01 5 82837411 82837411 T G VCAN Missense_Mutation p.D2863E 0.29 tolerated(0.55) benign(0.001) TCGA-21-5782-01 5 9122846 9122846 C A SEMA5A Missense_Mutation p.R568L 0.41 deleterious(0.01) possibly_damaging(0.719) TCGA-21-5782-01 5 94278092 94278092 C A MCTP1 Missense_Mutation p.G341C 0.21 deleterious(0) probably_damaging(1) TCGA-21-5782-01 6 127797194 127797194 C A SOGA3 Silent p.L659L 0.35 TCGA-21-5782-01 6 129828633 129828633 G A LAMA2 Splice_Site p.X2902_splice 0.21 TCGA-21-5782-01 6 133783575 133783575 C A EYA4 Silent p.A180A 0.47 TCGA-21-5782-01 6 135518136 135518136 T G MYB Missense_Mutation p.F414C 0.49 deleterious(0) benign(0.005) TCGA-21-5782-01 6 136173114 136173114 C A PDE7B 5'UTR 0.49 TCGA-21-5782-01 6 136582558 136582558 T C BCLAF1 Missense_Mutation p.T868A 0.10 tolerated(0.72) benign(0.388) TCGA-21-5782-01 6 142491526 142491526 G T VTA1 Missense_Mutation p.V127F 0.51 deleterious(0) probably_damaging(0.977) TCGA-21-5782-01 6 150291161 150291161 C G ULBP1 Missense_Mutation p.S212C 0.54 deleterious(0) possibly_damaging(0.76) TCGA-21-5782-01 6 24596652 24596652 G T KIAA0319 Missense_Mutation p.H84N 0.20 tolerated(0.11) benign(0.199) TCGA-21-5782-01 6 25581154 25581154 G A LRRC16A Missense_Mutation p.M915I 0.70 tolerated(0.21) benign(0.126) TCGA-21-5782-01 6 25913422 25913422 G C SLC17A2 3'UTR 0.20 TCGA-21-5782-01 6 29911898 29911898 G A HLA-A Splice_Site p.X207_splice 0.10 TCGA-21-5782-01 6 3127490 3127490 G A BPHL Missense_Mutation p.D76N 0.25 deleterious(0) probably_damaging(0.984) TCGA-21-5782-01 6 31599915 31599915 C T PRRC2A Silent p.A1155A 0.09 TCGA-21-5782-01 6 31828012 31828012 G A NEU1 Silent p.V276V 0.14 TCGA-21-5782-01 6 38941582 38941582 T A DNAH8 Nonsense_Mutation p.L4007* 0.13 TCGA-21-5782-01 6 41903775 41903775 G C CCND3 Missense_Mutation p.T261S 0.22 tolerated(0.75) benign(0.007) TCGA-21-5782-01 6 42858257 42858257 C G C6orf226 Silent p.A90A 0.29 TCGA-21-5782-01 6 45480080 45480080 C A RUNX2 Silent p.T319T 0.21 TCGA-21-5782-01 6 52103543 52103543 G T IL17F Missense_Mutation p.S80Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-21-5782-01 6 87796149 87796149 C T CGA Missense_Mutation p.C31Y 0.27 deleterious(0) probably_damaging(0.99) TCGA-21-5782-01 7 107224331 107224331 C T BCAP29 Nonsense_Mutation p.Q33* 0.26 TCGA-21-5782-01 7 127253085 127253085 G C PAX4 Missense_Mutation p.Q228E 0.35 tolerated(0.19) benign(0.384) TCGA-21-5782-01 7 128480920 128480920 G C FLNC Missense_Mutation p.G570A 0.29 deleterious(0) possibly_damaging(0.816) TCGA-21-5782-01 7 141750562 141750562 G T MGAM Missense_Mutation p.E901D 0.23 tolerated(0.37) benign(0.116) TCGA-21-5782-01 7 142162372 142162372 C T TRBV6-6 5'UTR 0.27 TCGA-21-5782-01 7 142880888 142880888 G T TAS2R39 Missense_Mutation p.W126L 0.23 deleterious(0) probably_damaging(0.998) TCGA-21-5782-01 7 38398295 38398295 C A TRGV3 Nonsense_Mutation p.E58* 0.21 TCGA-21-5782-01 7 44432005 44432005 T A NUDCD3 Missense_Mutation p.N289I 0.23 deleterious(0) possibly_damaging(0.837) TCGA-21-5782-01 7 4839816 4839816 G A RADIL Silent p.L990L 0.28 TCGA-21-5782-01 7 82583224 82583224 C A PCLO Missense_Mutation p.A2349S 0.28 unknown(0) TCGA-21-5782-01 7 91503548 91503548 C G MTERF Missense_Mutation p.G187A 0.28 deleterious(0) probably_damaging(0.994) TCGA-21-5782-01 7 94163055 94163055 C A CASD1 Missense_Mutation p.S190Y 0.06 tolerated(0.06) possibly_damaging(0.663) TCGA-21-5782-01 7 99227070 99227070 G T ZSCAN25 Silent p.G354G 0.18 TCGA-21-5782-01 8 100146912 100146912 C G VPS13B Missense_Mutation p.S420C 0.18 tolerated(0.06) possibly_damaging(0.869) TCGA-21-5782-01 8 103299699 103299699 C G UBR5 Missense_Mutation p.R1640T 0.22 deleterious(0) probably_damaging(0.942) TCGA-21-5782-01 8 126079918 126079918 C G KIAA0196 Missense_Mutation p.Q398H 0.09 tolerated(0.55) probably_damaging(0.975) TCGA-21-5782-01 8 126085518 126085518 G C KIAA0196 Missense_Mutation p.Q343E 0.38 tolerated(0.84) benign(0.338) TCGA-21-5782-01 8 133045387 133045387 C T OC90 Missense_Mutation p.R253K 0.20 tolerated(0.92) benign(0.001) TCGA-21-5782-01 8 134057316 134057316 G - SLA Frame_Shift_Del p.R173Afs*25 0.20 TCGA-21-5782-01 8 139153476 139153476 C A FAM135B Missense_Mutation p.G1252V 0.21 deleterious(0) probably_damaging(0.999) TCGA-21-5782-01 8 146015201 146015201 C T RPL8 Silent p.E254E 0.17 TCGA-21-5782-01 8 19677966 19677966 A G INTS10 Silent p.L126L 0.32 TCGA-21-5782-01 8 21931238 21931238 C T DMTN Intron 0.42 TCGA-21-5782-01 8 24298630 24298630 C T ADAM7 Silent p.P3P 0.21 TCGA-21-5782-01 8 25234921 25234921 C T DOCK5 Missense_Mutation p.S1306L 0.23 tolerated(0.11) benign(0.027) TCGA-21-5782-01 8 2808633 2808633 T C CSMD1 Intron 0.25 TCGA-21-5782-01 8 61764685 61764685 A G CHD7 Missense_Mutation p.K1925E 0.25 possibly_damaging(0.606) TCGA-21-5782-01 8 62479831 62479831 C A ASPH Missense_Mutation p.R399L 0.19 tolerated(0.18) benign(0.018) TCGA-21-5782-01 9 119976666 119976666 C A ASTN2 Missense_Mutation p.G329V 0.43 deleterious_low_confidence(0.01) unknown(0) TCGA-21-5782-01 9 130279138 130279138 C G FAM129B Missense_Mutation p.R324P 0.24 deleterious(0) probably_damaging(0.997) TCGA-21-5782-01 9 139393419 139393419 C A NOTCH1 Missense_Mutation p.V2038L 0.48 deleterious(0.03) probably_damaging(0.998) TCGA-21-5782-01 9 14788993 14788993 G A FREM1 Silent p.F1367F 0.50 TCGA-21-5782-01 9 35616043 35616043 C A CD72 Silent p.T195T 0.33 TCGA-21-5782-01 9 5022154 5022154 C - JAK2 Frame_Shift_Del p.P58Hfs*30 0.15 TCGA-21-5782-01 9 71006545 71006545 C T PGM5 Nonsense_Mutation p.Q265* 0.30 TCGA-21-5782-01 9 8317909 8317909 C G PTPRD Missense_Mutation p.E1902Q 0.39 deleterious(0.01) probably_damaging(0.995) TCGA-21-5782-01 X 100630170 100630170 G T BTK Missense_Mutation p.H35N 0.28 tolerated(0.1) benign(0.001) TCGA-21-5782-01 X 101624776 101624776 G T NXF2B Intron 0.20 TCGA-21-5782-01 X 10450578 10450578 A T MID1 Missense_Mutation p.S319T 0.25 tolerated(0.69) benign(0.001) TCGA-21-5782-01 X 109963158 109963158 T A CHRDL1 Splice_Site p.X150_splice 0.29 TCGA-21-5782-01 X 11162211 11162211 C A ARHGAP6 Missense_Mutation p.A689S 0.19 tolerated(0.77) benign(0.016) TCGA-21-5782-01 X 117540902 117540902 A G WDR44 Silent p.P482P 0.31 TCGA-21-5782-01 X 117718731 117718751 TCTGGATGGGAGATTTTCTCC - DOCK11 In_Frame_Del p.D545_L551del 0.24 TCGA-21-5782-01 X 11783734 11783734 C T MSL3 Missense_Mutation p.R353C 0.11 tolerated(0.07) benign(0.132) TCGA-21-5782-01 X 119760290 119760290 A G C1GALT1C1 Silent p.D244D 0.22 TCGA-21-5782-01 X 120009306 120009306 G T CT47B1 Silent p.A73A 0.17 TCGA-21-5782-01 X 122318339 122318339 C G GRIA3 5'UTR 0.28 TCGA-21-5782-01 X 123224532 123224532 C T STAG2 Missense_Mutation p.P1129S 0.22 tolerated(0.37) benign(0.008) TCGA-21-5782-01 X 123538947 123538947 G C TENM1 Silent p.L1775L 0.23 TCGA-21-5782-01 X 129063396 129063396 C T UTP14A Nonsense_Mutation p.Q710* 0.24 TCGA-21-5782-01 X 131219974 131219974 C G FRMD7 Missense_Mutation p.K157N 0.24 deleterious(0) probably_damaging(0.999) TCGA-21-5782-01 X 135312596 135312596 A T MAP7D3 Silent p.S566S 0.15 TCGA-21-5782-01 X 135427978 135427978 C A GPR112 Missense_Mutation p.L705M 0.18 tolerated(0.21) possibly_damaging(0.459) TCGA-21-5782-01 X 135496412 135496412 C A GPR112 Nonsense_Mutation p.S3044* 0.22 TCGA-21-5782-01 X 13727078 13727078 C T RAB9A Silent p.S71S 0.21 TCGA-21-5782-01 X 137715014 137715014 C G FGF13 Silent p.T255T 0.25 TCGA-21-5782-01 X 142717782 142717782 C A SLITRK4 Missense_Mutation p.K381N 0.20 deleterious(0) probably_damaging(0.991) TCGA-21-5782-01 X 152226044 152226044 G T PNMA3 Missense_Mutation p.G211V 0.20 deleterious(0) probably_damaging(0.999) TCGA-21-5782-01 X 153587658 153587658 C G FLNA Missense_Mutation p.G1420A 0.19 deleterious(0) possibly_damaging(0.723) TCGA-21-5782-01 X 153595790 153595790 C A FLNA Silent p.P281P 0.22 TCGA-21-5782-01 X 15365296 15365296 C G FIGF Missense_Mutation p.D310H 0.24 deleterious(0.01) possibly_damaging(0.671) TCGA-21-5782-01 X 154134724 154134724 T C F8 Missense_Mutation p.I1782V 0.22 deleterious(0.02) benign(0.353) TCGA-21-5782-01 X 154156943 154156943 G - F8 Frame_Shift_Del p.R1708Afs*23 0.20 TCGA-21-5782-01 X 15619037 15619037 T A ACE2 5'UTR 0.27 TCGA-21-5782-01 X 17750265 17750265 C A NHS Missense_Mutation p.P1525H 0.13 deleterious(0.04) probably_damaging(1) TCGA-21-5782-01 X 17750266 17750266 C A NHS Silent p.P1525P 0.13 TCGA-21-5782-01 X 18767943 18767943 A G PPEF1 Missense_Mutation p.D90G 0.24 tolerated(0.09) benign(0.309) TCGA-21-5782-01 X 19025395 19025395 T C GPR64 Silent p.T549T 0.25 TCGA-21-5782-01 X 23018668 23018668 A G DDX53 Missense_Mutation p.K165R 0.23 tolerated(0.25) benign(0.005) TCGA-21-5782-01 X 32305785 32305785 G A DMD Missense_Mutation p.R2051W 0.23 possibly_damaging(0.835) TCGA-21-5782-01 X 3242718 3242718 G C MXRA5 Missense_Mutation p.I336M 0.18 deleterious(0) probably_damaging(0.999) TCGA-21-5782-01 X 32490278 32490278 G C DMD Intron 0.19 TCGA-21-5782-01 X 34150174 34150174 G A FAM47A Silent p.D74D 0.28 TCGA-21-5782-01 X 36083860 36083860 G T CHDC2 Missense_Mutation p.D15Y 0.15 deleterious(0) probably_damaging(0.921) TCGA-21-5782-01 X 45060020 45060020 C A CXorf36 Missense_Mutation p.A18S 0.33 tolerated_low_confidence(0.37) benign(0.04) TCGA-21-5782-01 X 46884231 46884231 G A JADE3 Silent p.E130E 0.16 TCGA-21-5782-01 X 47101575 47101575 G T USP11 Missense_Mutation p.C468F 0.22 deleterious(0) probably_damaging(1) TCGA-21-5782-01 X 48650417 48650417 C A GATA1 Missense_Mutation p.S129R 0.12 tolerated(0.07) benign(0.014) TCGA-21-5782-01 X 48922153 48922153 C A CCDC120 Missense_Mutation p.Q193K 0.33 tolerated_low_confidence(0.33) benign(0.09) TCGA-21-5782-01 X 49032245 49032245 G A PRICKLE3 Missense_Mutation p.S542L 0.21 tolerated_low_confidence(0.61) benign(0.08) TCGA-21-5782-01 X 53105980 53105980 C T GPR173 Silent p.Y59Y 0.14 TCGA-21-5782-01 X 54783783 54783783 G T ITIH6 Silent p.I908I 0.13 TCGA-21-5782-01 X 54957721 54957721 C A TRO 3'UTR 0.20 TCGA-21-5782-01 X 54957722 54957722 C A TRO 3'UTR 0.20 TCGA-21-5782-01 X 57358226 57358226 T A FAAH2 Missense_Mutation p.V203E 0.19 deleterious(0.01) probably_damaging(0.918) TCGA-21-5782-01 X 57618658 57618658 C T ZXDB Silent p.R59R 0.27 TCGA-21-5782-01 X 62570674 62570674 T G SPIN4 Missense_Mutation p.M9L 0.12 tolerated_low_confidence(0.53) unknown(0) TCGA-21-5782-01 X 63445176 63445176 G T ASB12 Missense_Mutation p.L119M 0.22 deleterious(0.01) probably_damaging(0.985) TCGA-21-5782-01 X 64737901 64737901 T A LAS1L Silent p.G631G 0.18 TCGA-21-5782-01 X 65242293 65242293 T G VSIG4 Missense_Mutation p.I338L 0.17 tolerated(0.2) benign(0.07) TCGA-21-5782-01 X 70603821 70603821 C G TAF1 Missense_Mutation p.Q673E 0.17 tolerated(0.18) probably_damaging(0.99) TCGA-21-5782-01 X 70621431 70621431 C G TAF1 Missense_Mutation p.C1300W 0.15 deleterious(0) probably_damaging(0.999) TCGA-21-5782-01 X 73066015 73066015 G T XIST RNA 0.14 TCGA-21-5782-01 X 74641769 74641769 C A ZDHHC15 Missense_Mutation p.G265C 0.31 deleterious(0) probably_damaging(0.997) TCGA-21-5782-01 X 75650228 75650228 G T MAGEE1 Missense_Mutation p.Q635H 0.29 deleterious(0.01) possibly_damaging(0.826) TCGA-21-5782-01 X 77393468 77393468 G T TAF9B Silent p.P87P 0.18 TCGA-21-5782-01 X 84347480 84347480 C T SATL1 3'UTR 0.24 TCGA-21-5782-01 X 84362765 84362765 A T SATL1 Missense_Mutation p.S404T 0.23 tolerated(0.64) possibly_damaging(0.68) TCGA-21-5782-01 X 9864571 9864571 G A SHROOM2 Missense_Mutation p.E875K 0.24 deleterious(0) possibly_damaging(0.811) TCGA-21-5782-01 X 99956580 99956580 T C SYTL4 Missense_Mutation p.Q67R 0.12 deleterious(0.03) probably_damaging(0.985) TCGA-21-5783-01 10 100148233 100148233 A T PYROXD2 Missense_Mutation p.L442Q 0.33 deleterious(0) possibly_damaging(0.512) TCGA-21-5783-01 10 102587310 102587310 T C PAX2 Silent p.Y396Y 0.22 TCGA-21-5783-01 10 106058919 106058919 G A GSTO2 Nonsense_Mutation p.W203* 0.16 TCGA-21-5783-01 10 108589357 108589357 T C SORCS1 Missense_Mutation p.Y234C 0.32 deleterious(0.01) possibly_damaging(0.447) TCGA-21-5783-01 10 117024737 117024737 T G ATRNL1 Silent p.S585S 0.24 TCGA-21-5783-01 10 119307648 119307649 - A EMX2 Frame_Shift_Ins p.Q223Tfs*10 0.38 TCGA-21-5783-01 10 120353586 120353586 G T PRLHR 3'UTR 0.35 TCGA-21-5783-01 10 134219207 134219207 C T PWWP2B Silent p.R401R 0.06 TCGA-21-5783-01 10 20290739 20290739 A G PLXDC2 Missense_Mutation p.T50A 0.55 tolerated_low_confidence(1) benign(0) TCGA-21-5783-01 10 23292203 23292203 G A ARMC3 Missense_Mutation p.V531I 0.14 tolerated(0.22) benign(0.004) TCGA-21-5783-01 10 23297783 23297783 C A ARMC3 Silent p.P656P 0.41 TCGA-21-5783-01 10 23326464 23326464 T A ARMC3 3'UTR 0.55 TCGA-21-5783-01 10 26830577 26830577 A G APBB1IP Missense_Mutation p.K371E 0.30 deleterious(0) possibly_damaging(0.794) TCGA-21-5783-01 10 31750023 31750023 T A ZEB1 Missense_Mutation p.L39Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-21-5783-01 10 35928236 35928236 C T FZD8 3'UTR 0.32 TCGA-21-5783-01 10 37421167 37421167 G T ANKRD30A Splice_Site p.X115_splice 0.55 TCGA-21-5783-01 10 48370728 48370728 G T ZNF488 Missense_Mutation p.G66C 0.25 deleterious(0) possibly_damaging(0.536) TCGA-21-5783-01 10 48371512 48371512 G A ZNF488 Missense_Mutation p.R327Q 0.29 tolerated(0.19) probably_damaging(0.995) TCGA-21-5783-01 10 53667309 53667309 G A PRKG1 Silent p.K247K 0.28 TCGA-21-5783-01 10 64973611 64973611 A G JMJD1C Silent p.T772T 0.24 TCGA-21-5783-01 10 69665979 69665979 C G SIRT1 Intron 0.22 TCGA-21-5783-01 10 73551000 73551000 A T CDH23 5'Flank 0.28 TCGA-21-5783-01 10 88752008 88752008 G C RP11-96C23.5 RNA 0.28 TCGA-21-5783-01 10 89692905 89692905 G A PTEN Missense_Mutation p.R130Q 0.40 deleterious(0.02) probably_damaging(0.989) TCGA-21-5783-01 10 95556744 95556744 C T LGI1 Silent p.C286C 0.31 TCGA-21-5783-01 10 99968619 99968619 A G R3HCC1L Missense_Mutation p.M250V 0.32 tolerated(0.55) benign(0.004) TCGA-21-5783-01 11 102668164 102668164 C A MMP1 Missense_Mutation p.G58V 0.65 tolerated(0.07) benign(0.112) TCGA-21-5783-01 11 10516443 10516443 C G AMPD3 Intron 0.22 TCGA-21-5783-01 11 116631556 116631556 G C BUD13 Missense_Mutation p.H383Q 0.53 tolerated(0.34) benign(0.004) TCGA-21-5783-01 11 116660829 116660829 T A APOA5 3'UTR 0.33 TCGA-21-5783-01 11 125875768 125875768 G C CDON Silent p.A579A 0.30 TCGA-21-5783-01 11 126396508 126396508 C A KIRREL3 Missense_Mutation p.A70S 0.64 tolerated(0.1) benign(0.1) TCGA-21-5783-01 11 128807393 128807393 C A TP53AIP1 Intron 0.48 TCGA-21-5783-01 11 20112465 20112465 G C NAV2 Missense_Mutation p.E1910D 0.74 deleterious(0) probably_damaging(0.989) TCGA-21-5783-01 11 27114731 27114731 C A BBOX1 Silent p.G117G 0.08 TCGA-21-5783-01 11 46726589 46726589 G T ZNF408 Missense_Mutation p.A447S 0.72 deleterious(0.02) probably_damaging(0.999) TCGA-21-5783-01 11 4674714 4674714 G A OR51E1 3'UTR 0.70 TCGA-21-5783-01 11 47381525 47381525 A T SPI1 Missense_Mutation p.F71Y 0.72 deleterious(0) possibly_damaging(0.628) TCGA-21-5783-01 11 48158631 48158631 C T PTPRJ Silent p.D650D 0.19 TCGA-21-5783-01 11 4936647 4936647 G A OR51G2 Missense_Mutation p.L83F 0.55 tolerated(0.17) benign(0.021) TCGA-21-5783-01 11 4968166 4968166 G T OR51A4 Silent p.P55P 0.73 TCGA-21-5783-01 11 51516037 51516037 C G OR4C46 Missense_Mutation p.C252W 0.51 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-21-5783-01 11 534288 534288 C A HRAS Missense_Mutation p.G12V 0.42 deleterious(0) possibly_damaging(0.674) TCGA-21-5783-01 11 55136172 55136172 C A OR4A15 Missense_Mutation p.H271Q 0.59 deleterious_low_confidence(0) probably_damaging(1) TCGA-21-5783-01 11 58604495 58604495 C G GLYATL2 Missense_Mutation p.D157H 0.55 tolerated(0.09) benign(0.376) TCGA-21-5783-01 11 63990923 63990923 G A FERMT3 Missense_Mutation p.D655N 0.52 deleterious(0) benign(0.412) TCGA-21-5783-01 11 788159 788159 G C CEND1 Missense_Mutation p.L140V 0.33 tolerated_low_confidence(0.23) benign(0.341) TCGA-21-5783-01 11 89880560 89880560 T A NAALAD2 Missense_Mutation p.I86N 0.57 deleterious(0) probably_damaging(0.998) TCGA-21-5783-01 11 9161355 9161355 T C DENND5A Missense_Mutation p.I1243V 0.72 tolerated(1) benign(0.004) TCGA-21-5783-01 12 102590450 102590450 G A PMCH Nonsense_Mutation p.R160* 0.24 TCGA-21-5783-01 12 103695914 103695914 C T C12orf42 Missense_Mutation p.R352K 0.51 tolerated(0.27) possibly_damaging(0.824) TCGA-21-5783-01 12 105515905 105515905 A G KIAA1033 Silent p.K225K 0.16 TCGA-21-5783-01 12 108961084 108961084 G - ISCU Intron 0.24 TCGA-21-5783-01 12 109610092 109610093 GG C ACACB Frame_Shift_Del p.G350Pfs*23 0.11 TCGA-21-5783-01 12 110729912 110729912 A G ATP2A2 Missense_Mutation p.I103V 0.17 tolerated(0.68) benign(0.006) TCGA-21-5783-01 12 111744769 111744769 C T CUX2 Silent p.A301A 0.39 TCGA-21-5783-01 12 111779657 111779657 C - CUX2 Frame_Shift_Del p.S1155Afs*9 0.32 TCGA-21-5783-01 12 11214891 11214891 C A TAS2R46 Translation_Start_Site p.M1? 0.38 deleterious(0.03) possibly_damaging(0.702) TCGA-21-5783-01 12 14953706 14953706 G A WBP11 Missense_Mutation p.R26W 0.19 deleterious(0) unknown(0) TCGA-21-5783-01 12 16510556 16510556 A C MGST1 Missense_Mutation p.E48D 0.19 deleterious(0.01) probably_damaging(0.994) TCGA-21-5783-01 12 21926621 21926621 C G KCNJ8 Splice_Site 0.42 TCGA-21-5783-01 12 25398279 25398279 C T KRAS Missense_Mutation p.V14I 0.19 deleterious(0) probably_damaging(0.968) TCGA-21-5783-01 12 29648339 29648339 C T OVCH1 Silent p.Q111Q 0.17 TCGA-21-5783-01 12 32136686 32136686 G C KIAA1551 Missense_Mutation p.G933R 0.08 tolerated(0.05) possibly_damaging(0.461) TCGA-21-5783-01 12 3935380 3935380 G A PARP11 Silent p.L96L 0.21 TCGA-21-5783-01 12 40040691 40040691 G A C12orf40 Splice_Site p.X128_splice 0.09 TCGA-21-5783-01 12 48191244 48191244 G A HDAC7 Missense_Mutation p.S167F 0.21 deleterious(0.02) possibly_damaging(0.575) TCGA-21-5783-01 12 51689660 51689660 C T BIN2 Silent p.L227L 0.21 TCGA-21-5783-01 12 52387863 52387863 A G ACVR1B Missense_Mutation p.Q537R 0.40 tolerated(0.14) possibly_damaging(0.516) TCGA-21-5783-01 12 53038859 53038859 C A KRT2 Missense_Mutation p.V622L 0.44 deleterious_low_confidence(0) unknown(0) TCGA-21-5783-01 12 55715108 55715108 A T OR6C1 Missense_Mutation p.H242L 0.45 deleterious_low_confidence(0) probably_damaging(1) TCGA-21-5783-01 12 57919880 57919880 G C MBD6 Missense_Mutation p.E377Q 0.24 deleterious_low_confidence(0.01) unknown(0) TCGA-21-5783-01 12 70065237 70065237 G T BEST3 Silent p.P357P 0.42 TCGA-21-5783-01 12 7016543 7016543 G C LRRC23 Missense_Mutation p.E185D 0.20 deleterious(0.02) benign(0.101) TCGA-21-5783-01 12 8195258 8195258 C T FOXJ2 Missense_Mutation p.S113L 0.16 deleterious(0) probably_damaging(0.997) TCGA-21-5783-01 13 114128512 114128512 C G DCUN1D2 Missense_Mutation p.K149N 0.28 tolerated(0.05) benign(0.005) TCGA-21-5783-01 13 20010418 20010418 C T TPTE2 Missense_Mutation p.R355Q 0.74 deleterious(0) possibly_damaging(0.862) TCGA-21-5783-01 13 21729290 21729290 C G SKA3 Splice_Site 0.15 TCGA-21-5783-01 13 26792720 26792720 G A RNF6 Nonsense_Mutation p.Q73* 0.30 TCGA-21-5783-01 13 28367754 28367754 C A GSX1 Missense_Mutation p.T155N 0.67 deleterious(0) probably_damaging(1) TCGA-21-5783-01 13 28891647 28891647 G T FLT1 Missense_Mutation p.S1125Y 0.62 deleterious(0) benign(0.028) TCGA-21-5783-01 13 33703923 33703923 G C STARD13 Silent p.S297S 0.24 TCGA-21-5783-01 13 41515184 41515184 G A ELF1 Missense_Mutation p.P377S 0.55 tolerated(0.65) benign(0.04) TCGA-21-5783-01 13 60384942 60384942 C T DIAPH3 Missense_Mutation p.R1048H 0.23 deleterious(0.02) benign(0.433) TCGA-21-5783-01 13 72146977 72146977 T C DACH1 Missense_Mutation p.I434V 0.42 benign(0.108) TCGA-21-5783-01 13 77633748 77633748 C A MYCBP2 Silent p.T4312T 0.46 TCGA-21-5783-01 13 86369332 86369332 C A SLITRK6 Nonsense_Mutation p.E438* 0.20 TCGA-21-5783-01 13 95364109 95364109 G T SOX21 Silent p.R65R 0.38 TCGA-21-5783-01 13 96239820 96239820 C A DZIP1 Missense_Mutation p.D731Y 0.17 deleterious(0) possibly_damaging(0.847) TCGA-21-5783-01 13 99907119 99907119 G C GPR18 3'UTR 0.41 TCGA-21-5783-01 14 102507007 102507007 G A DYNC1H1 Missense_Mutation p.A3980T 0.18 benign(0.007) TCGA-21-5783-01 14 20483199 20483199 C G OR4K14 Missense_Mutation p.D52H 0.47 deleterious(0) benign(0.04) TCGA-21-5783-01 14 21991988 21991988 G C SALL2 Nonsense_Mutation p.S625* 0.12 TCGA-21-5783-01 14 23828678 23828678 G C EFS Missense_Mutation p.L337V 0.34 deleterious(0) probably_damaging(0.997) TCGA-21-5783-01 14 24737134 24737134 C A RABGGTA Missense_Mutation p.R393L 0.18 deleterious(0) probably_damaging(0.998) TCGA-21-5783-01 14 33015521 33015521 T A AKAP6 Silent p.L554L 0.42 TCGA-21-5783-01 14 35742758 35742758 C T KIAA0391 Missense_Mutation p.H580Y 0.27 deleterious(0.03) possibly_damaging(0.888) TCGA-21-5783-01 14 36781206 36781206 G T MBIP Missense_Mutation p.A199E 0.19 deleterious(0.01) possibly_damaging(0.846) TCGA-21-5783-01 14 51095039 51095039 G C ATL1 Missense_Mutation p.L470F 0.19 tolerated(0.05) benign(0.043) TCGA-21-5783-01 14 51111544 51111544 G A SAV1 Nonsense_Mutation p.R242* 0.26 TCGA-21-5783-01 14 57747020 57747020 C T AP5M1 Silent p.D276D 0.24 TCGA-21-5783-01 14 58030970 58030970 G A SLC35F4 Silent p.F483F 0.46 TCGA-21-5783-01 14 65453766 65453766 G T FNTB Missense_Mutation p.R32L 0.40 tolerated(0.09) benign(0.021) TCGA-21-5783-01 14 73181164 73181164 G A DPF3 Nonsense_Mutation p.Q191* 0.42 TCGA-21-5783-01 14 73420908 73420909 - C DCAF4 Frame_Shift_Ins p.G284Wfs*15 0.30 TCGA-21-5783-01 14 88792834 88792834 C G KCNK10 5'Flank 0.36 TCGA-21-5783-01 14 93412807 93412807 G A ITPK1 Missense_Mutation p.P257L 0.23 deleterious(0) probably_damaging(0.937) TCGA-21-5783-01 15 25963436 25963436 C T ATP10A Missense_Mutation p.V492M 0.36 tolerated(0.31) benign(0.043) TCGA-21-5783-01 15 28361926 28361926 C A HERC2 Silent p.T4498T 0.17 TCGA-21-5783-01 15 28525314 28525314 C A HERC2 Nonsense_Mutation p.E148* 0.38 TCGA-21-5783-01 15 33876679 33876679 G T RYR3 Nonsense_Mutation p.E553* 0.20 TCGA-21-5783-01 15 33945067 33945067 C A RYR3 Missense_Mutation p.L1431M 0.13 benign(0.091) TCGA-21-5783-01 15 34820013 34820013 G A GOLGA8B Silent p.T544T 0.17 TCGA-21-5783-01 15 41688886 41688886 G A NDUFAF1 Silent p.V124V 0.26 TCGA-21-5783-01 15 42436781 42436781 T A PLA2G4F Silent p.P614P 0.55 TCGA-21-5783-01 15 43577038 43577038 C A TGM7 Silent p.L326L 0.15 TCGA-21-5783-01 15 44211990 44211990 T C FRMD5 Silent p.T75T 0.19 TCGA-21-5783-01 15 45398005 45398005 C T DUOX2 Missense_Mutation p.E724K 0.28 tolerated(0.36) benign(0.118) TCGA-21-5783-01 15 49868981 49868981 G A FAM227B Missense_Mutation p.A168V 0.38 tolerated(0.06) probably_damaging(1) TCGA-21-5783-01 15 51018568 51018568 C G SPPL2A Missense_Mutation p.E366Q 0.36 tolerated(0.09) benign(0.285) TCGA-21-5783-01 15 51503112 51503112 C A CYP19A1 Nonsense_Mutation p.E469* 0.18 TCGA-21-5783-01 15 55710254 55710254 G A C15orf65 Intron 0.33 TCGA-21-5783-01 15 55972263 55972263 A G PRTG Missense_Mutation p.L321S 0.50 deleterious(0.02) probably_damaging(0.949) TCGA-21-5783-01 15 58254281 58254281 G A ALDH1A2 Nonsense_Mutation p.R394* 0.26 TCGA-21-5783-01 15 59911373 59911373 C T GCNT3 Silent p.N312N 0.44 TCGA-21-5783-01 15 65982903 65982903 T G DENND4A Missense_Mutation p.L1342F 0.32 tolerated(0.21) benign(0.019) TCGA-21-5783-01 15 66795205 66795205 T C RPL4 Intron 0.26 TCGA-21-5783-01 15 74659825 74659825 A T CYP11A1 Silent p.T34T 0.28 TCGA-21-5783-01 15 82335645 82335645 G A MEX3B Silent p.F522F 0.21 TCGA-21-5783-01 16 27761089 27761089 C T KIAA0556 Silent p.S936S 0.19 TCGA-21-5783-01 16 2987262 2987262 G A FLYWCH1 Missense_Mutation p.A551T 0.36 tolerated(0.08) probably_damaging(0.999) TCGA-21-5783-01 16 31144067 31144067 G T PRSS8 Silent p.A158A 0.44 TCGA-21-5783-01 16 32077463 32077463 A G IGHV3OR16-9 Silent p.G26G 0.21 TCGA-21-5783-01 16 4432169 4432169 T G VASN Missense_Mutation p.L431V 0.64 tolerated(0.31) benign(0.02) TCGA-21-5783-01 16 5064936 5064936 G T SEC14L5 Missense_Mutation p.G686C 0.29 deleterious(0) unknown(0) TCGA-21-5783-01 16 55806334 55806334 C A CES1P1 RNA 0.26 TCGA-21-5783-01 16 58585667 58585667 G A CNOT1 Silent p.I1009I 0.33 TCGA-21-5783-01 16 65026881 65026881 T G CDH11 Missense_Mutation p.S194R 0.28 deleterious(0) possibly_damaging(0.844) TCGA-21-5783-01 16 65032563 65032563 G T CDH11 Missense_Mutation p.P142Q 0.41 deleterious(0.05) probably_damaging(1) TCGA-21-5783-01 16 67579394 67579394 C A FAM65A Missense_Mutation p.D1069E 0.13 tolerated(0.05) benign(0.417) TCGA-21-5783-01 16 70508115 70508115 C T FUK Missense_Mutation p.R621C 0.33 tolerated(0.15) benign(0.014) TCGA-21-5783-01 16 72830536 72830536 G A ZFHX3 Silent p.L2015L 0.13 TCGA-21-5783-01 16 86544331 86544331 C G FOXF1 Silent p.S52S 0.43 TCGA-21-5783-01 16 8998323 8998323 C A USP7 Missense_Mutation p.R558L 0.46 deleterious(0) possibly_damaging(0.834) TCGA-21-5783-01 16 9009312 9009312 C A USP7 Missense_Mutation p.G326V 0.15 deleterious(0) probably_damaging(1) TCGA-21-5783-01 17 11672548 11672548 C A DNAH9 Nonsense_Mutation p.S2485* 0.53 TCGA-21-5783-01 17 1563235 1563235 G A PRPF8 Missense_Mutation p.P1616S 0.11 deleterious(0) probably_damaging(0.995) TCGA-21-5783-01 17 21319585 21319585 C A KCNJ12 Missense_Mutation p.Q311K 0.08 deleterious(0) probably_damaging(0.999) TCGA-21-5783-01 17 21825411 21825411 G T FAM27L RNA 0.64 TCGA-21-5783-01 17 26685959 26685959 G A TMEM199 Missense_Mutation p.E78K 0.27 tolerated(0.08) probably_damaging(0.924) TCGA-21-5783-01 17 33806709 33806709 C T SLFN12L Missense_Mutation p.A174T 0.22 tolerated(0.42) benign(0.089) TCGA-21-5783-01 17 37374123 37374123 C A STAC2 Missense_Mutation p.V132L 0.25 deleterious(0.01) probably_damaging(0.966) TCGA-21-5783-01 17 42455750 42455750 G T ITGA2B Silent p.R692R 0.24 TCGA-21-5783-01 17 43344020 43344020 C T SPATA32 5'Flank 0.27 TCGA-21-5783-01 17 44249117 44249117 C T KANSL1 Silent p.L131L 0.12 TCGA-21-5783-01 17 45376894 45376894 G C ITGB3 Missense_Mutation p.K637N 0.23 deleterious(0) probably_damaging(0.948) TCGA-21-5783-01 17 45384987 45384987 G A ITGB3 Missense_Mutation p.R762K 0.33 tolerated(0.92) benign(0.02) TCGA-21-5783-01 17 46655255 46655255 G A HOXB4 Missense_Mutation p.P143S 0.14 deleterious(0) probably_damaging(0.992) TCGA-21-5783-01 17 46669806 46669806 G A HOXB5 Missense_Mutation p.P192L 0.20 tolerated(0.08) benign(0.402) TCGA-21-5783-01 17 46804358 46804358 G T HOXB13 Missense_Mutation p.R217S 0.15 deleterious(0) probably_damaging(0.999) TCGA-21-5783-01 17 47797767 47797767 G C FAM117A Missense_Mutation p.T165R 0.58 tolerated(0.08) probably_damaging(0.994) TCGA-21-5783-01 17 48559702 48559702 G T RSAD1 Missense_Mutation p.R242L 0.21 tolerated(0.28) benign(0.051) TCGA-21-5783-01 17 49248945 49248945 C T NME1-NME2 Missense_Mutation p.H262Y 0.16 tolerated(0.52) benign(0.002) TCGA-21-5783-01 17 5086078 5086078 C T ZNF594 Missense_Mutation p.E492K 0.24 deleterious(0.03) probably_damaging(0.987) TCGA-21-5783-01 17 53046062 53046062 G A COX11 5'UTR 0.23 TCGA-21-5783-01 17 58511594 58511594 G C C17orf64 3'Flank 0.19 TCGA-21-5783-01 17 60765881 60765881 G A MRC2 Silent p.L1027L 0.47 TCGA-21-5783-01 17 65156447 65156447 C T HELZ Missense_Mutation p.A703T 0.23 deleterious(0) probably_damaging(0.999) TCGA-21-5783-01 17 7155820 7155820 T A ELP5 5'UTR 0.14 TCGA-21-5783-01 17 7161984 7161984 C T ELP5 Silent p.S239S 0.39 TCGA-21-5783-01 17 72340928 72340928 G T KIF19 Missense_Mutation p.R204L 0.33 deleterious(0) benign(0.169) TCGA-21-5783-01 17 7579351 7579359 GCCCAGACG - TP53 In_Frame_Del p.R110_G112del 0.36 TCGA-21-5783-01 17 7748938 7748938 G A KDM6B Silent p.L22L 0.32 TCGA-21-5783-01 17 78321574 78321574 C T RNF213 Missense_Mutation p.R3147C 0.28 probably_damaging(0.989) TCGA-21-5783-01 17 78403629 78403629 C T ENDOV Missense_Mutation p.S279L 0.23 deleterious_low_confidence(0.02) benign(0.024) TCGA-21-5783-01 17 79164472 79164472 C T AZI1 Missense_Mutation p.R1025H 0.36 deleterious(0.01) possibly_damaging(0.548) TCGA-21-5783-01 17 79974865 79974865 C T ASPSCR1 Silent p.D602D 0.28 TCGA-21-5783-01 17 79985295 79985295 C T LRRC45 Nonsense_Mutation p.R270* 0.36 TCGA-21-5783-01 17 8007452 8007452 G A ALOXE3 Missense_Mutation p.A721V 0.56 deleterious(0.02) probably_damaging(0.919) TCGA-21-5783-01 18 21419840 21419840 C T LAMA3 Nonsense_Mutation p.Q1095* 0.14 TCGA-21-5783-01 18 29045362 29045362 C A DSG3 Missense_Mutation p.N451K 0.44 deleterious(0.01) benign(0.013) TCGA-21-5783-01 18 32428344 32428344 G A DTNA Silent p.S390S 0.20 TCGA-21-5783-01 18 346515 346515 G A COLEC12 Silent p.T369T 0.45 TCGA-21-5783-01 18 50592479 50592479 G C DCC Missense_Mutation p.A402P 0.57 deleterious(0) probably_damaging(0.999) TCGA-21-5783-01 18 5478323 5478323 G A EPB41L3 Missense_Mutation p.P100S 0.66 deleterious(0) benign(0.417) TCGA-21-5783-01 18 56963958 56963958 G C CPLX4 Missense_Mutation p.T152R 0.31 tolerated(0.13) benign(0.013) TCGA-21-5783-01 18 70205584 70205584 G T CBLN2 Missense_Mutation p.P168T 0.14 tolerated(0.09) probably_damaging(0.93) TCGA-21-5783-01 18 76754204 76754204 A G SALL3 Missense_Mutation p.Q738R 0.23 deleterious(0) probably_damaging(0.968) TCGA-21-5783-01 19 14232479 14232479 G A ASF1B Silent p.A89A 0.38 TCGA-21-5783-01 19 15770214 15770214 C G CYP4F3 3'UTR 0.50 TCGA-21-5783-01 19 21607394 21607394 G A ZNF493 Missense_Mutation p.A645T 0.55 tolerated(1) benign(0.005) TCGA-21-5783-01 19 23159512 23159512 G T ZNF728 Silent p.A209A 0.67 TCGA-21-5783-01 19 23938323 23938323 C A ZNF681 Nonsense_Mutation p.E12* 0.48 TCGA-21-5783-01 19 40336938 40336938 C A FBL Translation_Start_Site p.M1? 0.21 tolerated_low_confidence(1) unknown(0) TCGA-21-5783-01 19 42223893 42223893 G T CEACAM5 Missense_Mutation p.V513L 0.52 tolerated(0.1) possibly_damaging(0.561) TCGA-21-5783-01 19 44514839 44514839 A G ZNF230 Silent p.R216R 0.57 TCGA-21-5783-01 19 46002588 46002588 G A PPM1N Silent p.A286A 0.11 TCGA-21-5783-01 19 4816913 4816913 C T TICAM1 Missense_Mutation p.E493K 0.62 deleterious(0) probably_damaging(0.982) TCGA-21-5783-01 19 49357021 49357021 G A PLEKHA4 Missense_Mutation p.A415V 0.47 tolerated(0.08) benign(0.023) TCGA-21-5783-01 19 49573272 49573272 C T KCNA7 3'UTR 0.26 TCGA-21-5783-01 19 49686092 49686092 G C TRPM4 Silent p.L507L 0.38 TCGA-21-5783-01 19 50735262 50735262 G A MYH14 Missense_Mutation p.R350Q 0.15 tolerated(0.28) benign(0.028) TCGA-21-5783-01 19 52091695 52091695 C T ZNF175 Missense_Mutation p.S704F 0.56 deleterious(0) benign(0.367) TCGA-21-5783-01 19 53770538 53770538 A T VN1R4 Silent p.V127V 0.15 TCGA-21-5783-01 19 53994631 53994631 C A ZNF813 Missense_Mutation p.P382H 0.17 deleterious(0) probably_damaging(0.997) TCGA-21-5783-01 19 54215605 54215605 G C MIR517A RNA 0.23 TCGA-21-5783-01 19 54403953 54403953 G T PRKCG Missense_Mutation p.G509W 0.19 deleterious(0) probably_damaging(0.999) TCGA-21-5783-01 19 54445548 54445548 G T CACNG7 3'UTR 0.39 TCGA-21-5783-01 19 54502916 54502916 A T CACNG6 Silent p.A145A 0.18 TCGA-21-5783-01 19 54848247 54848247 G T LILRA4 Missense_Mutation p.H374N 0.29 tolerated(0.36) benign(0.155) TCGA-21-5783-01 19 54849837 54849837 T A LILRA4 Missense_Mutation p.K62I 0.22 deleterious(0.01) benign(0.435) TCGA-21-5783-01 19 55703028 55703028 C G PTPRH Intron 0.23 TCGA-21-5783-01 19 56204320 56204320 C T EPN1 Missense_Mutation p.A480V 0.11 tolerated(0.28) benign(0.012) TCGA-21-5783-01 19 57175929 57175929 C T ZNF835 Missense_Mutation p.R213Q 0.60 tolerated(1) benign(0.015) TCGA-21-5783-01 19 57325073 57325073 G A PEG3 Silent p.L1579L 0.32 TCGA-21-5783-01 19 57642822 57642822 T A USP29 3'UTR 0.30 TCGA-21-5783-01 19 58806014 58806014 G T ZNF8 Silent p.T280T 0.47 TCGA-21-5783-01 19 58806015 58806015 G C ZNF8 Missense_Mutation p.G281R 0.50 deleterious(0) probably_damaging(1) TCGA-21-5783-01 19 7166416 7166416 C T INSR Splice_Site p.X537_splice 0.18 TCGA-21-5783-01 19 9061145 9061145 C G MUC16 Silent p.T8767T 0.50 TCGA-21-5783-01 1 102290666 102290666 C A OLFM3 Nonsense_Mutation p.E170* 0.69 TCGA-21-5783-01 1 109394297 109394297 G T AKNAD1 Silent p.I330I 0.59 TCGA-21-5783-01 1 114380880 114380880 A G PTPN22 Missense_Mutation p.L381P 0.58 deleterious(0.03) possibly_damaging(0.867) TCGA-21-5783-01 1 1178504 1178504 C T FAM132A Silent p.R223R 0.36 TCGA-21-5783-01 1 12364582 12364582 C T VPS13D Missense_Mutation p.S2079F 0.19 probably_damaging(0.948) TCGA-21-5783-01 1 1425712 1425712 C G ATAD3B Silent p.V471V 0.43 TCGA-21-5783-01 1 152636650 152636650 A G LCE2D Silent p.K23K 0.18 TCGA-21-5783-01 1 155165540 155165540 G A THBS3 3'UTR 0.23 TCGA-21-5783-01 1 156640151 156640151 C A NES Nonsense_Mutation p.E1277* 0.75 TCGA-21-5783-01 1 156882047 156882047 C T PEAR1 Missense_Mutation p.P654S 0.71 tolerated(0.74) benign(0.021) TCGA-21-5783-01 1 156882048 156882048 C T PEAR1 Missense_Mutation p.P654L 0.74 tolerated(0.64) benign(0.006) TCGA-21-5783-01 1 157489561 157489561 C G FCRL5 Splice_Site p.X878_splice 0.20 TCGA-21-5783-01 1 157665260 157665260 G T FCRL3 Missense_Mutation p.L424M 0.61 tolerated(0.05) probably_damaging(0.997) TCGA-21-5783-01 1 158262497 158262497 G A CD1C Missense_Mutation p.R241Q 0.21 tolerated(0.11) benign(0.276) TCGA-21-5783-01 1 158746517 158746517 C A OR6N2 Missense_Mutation p.R303S 0.19 deleterious(0) benign(0.354) TCGA-21-5783-01 1 160309760 160309760 C T COPA Missense_Mutation p.G56D 0.17 deleterious(0) probably_damaging(0.949) TCGA-21-5783-01 1 161830006 161830006 G C ATF6 Missense_Mutation p.E515Q 0.34 tolerated(0.33) benign(0.01) TCGA-21-5783-01 1 168066380 168066380 C T GPR161 Silent p.S175S 0.23 TCGA-21-5783-01 1 16912114 16912114 C T NBPF1 Missense_Mutation p.M286I 0.09 deleterious(0.05) possibly_damaging(0.899) TCGA-21-5783-01 1 169565229 169565229 T C SELP Missense_Mutation p.I679V 0.67 tolerated(0.84) benign(0.001) TCGA-21-5783-01 1 176760506 176760506 G C PAPPA2 Missense_Mutation p.E1636D 0.73 tolerated(1) benign(0.024) TCGA-21-5783-01 1 196577427 196577427 C - KCNT2 Frame_Shift_Del p.E5Rfs*18 0.33 TCGA-21-5783-01 1 197030045 197030045 G T F13B Silent p.L204L 0.33 TCGA-21-5783-01 1 197684165 197684165 T C DENND1B Missense_Mutation p.D41G 0.13 deleterious(0) benign(0.009) TCGA-21-5783-01 1 216138803 216138803 C T USH2A Missense_Mutation p.E2326K 0.59 probably_damaging(0.967) TCGA-21-5783-01 1 226411765 226411765 C G MIXL1 Missense_Mutation p.S128C 0.43 deleterious(0) probably_damaging(0.992) TCGA-21-5783-01 1 227069649 227069649 G T PSEN2 Missense_Mutation p.C14F 0.52 tolerated(0.26) benign(0.215) TCGA-21-5783-01 1 227216776 227216776 G C CDC42BPA Silent p.T1303T 0.32 TCGA-21-5783-01 1 237837475 237837475 G T RYR2 Missense_Mutation p.Q2890H 0.63 possibly_damaging(0.469) TCGA-21-5783-01 1 248202221 248202222 GG T OR2L2 Frame_Shift_Del p.G218Sfs*29 0.32 TCGA-21-5783-01 1 248616356 248616356 C G OR2T2 Silent p.L86L 0.29 TCGA-21-5783-01 1 32505117 32505117 G A KHDRBS1 Missense_Mutation p.D393N 0.19 tolerated(0.08) benign(0.006) TCGA-21-5783-01 1 32843614 32843614 C T BSDC1 Silent p.A228A 0.09 TCGA-21-5783-01 1 40980551 40980551 C T EXO5 Missense_Mutation p.A112V 0.22 tolerated(0.24) benign(0.051) TCGA-21-5783-01 1 45480096 45480096 C A UROD Intron 0.67 TCGA-21-5783-01 1 46878853 46878853 G T FAAH Missense_Mutation p.R524S 0.74 tolerated(0.07) benign(0.016) TCGA-21-5783-01 1 48869491 48869491 T C SPATA6 Missense_Mutation p.R157G 0.20 tolerated(0.57) benign(0.116) TCGA-21-5783-01 1 52499220 52499220 G A KTI12 Missense_Mutation p.R72C 0.21 deleterious(0) probably_damaging(0.959) TCGA-21-5783-01 1 6188923 6188923 C T CHD5 Silent p.E1198E 0.73 TCGA-21-5783-01 1 6272450 6272450 G A RNF207 Missense_Mutation p.E486K 0.41 deleterious(0) possibly_damaging(0.721) TCGA-21-5783-01 1 6680020 6680020 G A PHF13 Missense_Mutation p.R100Q 0.23 deleterious(0.02) possibly_damaging(0.777) TCGA-21-5783-01 1 67724572 67724572 C T IL23R Missense_Mutation p.L551F 0.64 deleterious(0) probably_damaging(0.934) TCGA-21-5783-01 1 70505072 70505072 G T LRRC7 Missense_Mutation p.G1151W 0.56 deleterious(0.01) possibly_damaging(0.702) TCGA-21-5783-01 1 9416205 9416205 C T SPSB1 Silent p.D85D 0.40 TCGA-21-5783-01 20 17639335 17639335 C T RRBP1 Splice_Site p.X177_splice 0.36 TCGA-21-5783-01 20 18440834 18440834 C T DZANK1 Missense_Mutation p.D76N 0.14 tolerated(0.26) benign(0.139) TCGA-21-5783-01 20 30915384 30915384 G T KIF3B Missense_Mutation p.V630F 0.27 tolerated(0.07) benign(0.097) TCGA-21-5783-01 20 31654650 31654650 G C BPIFB3 Silent p.L315L 0.18 TCGA-21-5783-01 20 32232499 32232499 C T CBFA2T2 3'UTR 0.36 TCGA-21-5783-01 20 37356874 37356874 G A SLC32A1 Silent p.A390A 0.25 TCGA-21-5783-01 20 377240 377240 A G TRIB3 Missense_Mutation p.H328R 0.35 tolerated(0.53) benign(0.003) TCGA-21-5783-01 20 39832640 39832640 A G ZHX3 Missense_Mutation p.I306T 0.21 deleterious(0) probably_damaging(0.999) TCGA-21-5783-01 20 43837081 43837081 A T SEMG1 Silent p.L381L 0.38 TCGA-21-5783-01 20 5167351 5167351 G A CDS2 Missense_Mutation p.G283R 0.36 tolerated(0.56) benign(0.004) TCGA-21-5783-01 20 55059244 55059244 C T RTFDC1 Missense_Mutation p.T159M 0.15 tolerated(0.08) probably_damaging(0.909) TCGA-21-5783-01 20 5556518 5556518 A G GPCPD1 Missense_Mutation p.I271T 0.20 tolerated(0.19) benign(0.046) TCGA-21-5783-01 20 60904109 60904109 G A LAMA5 Missense_Mutation p.P1413L 0.25 benign(0.004) TCGA-21-5783-01 20 7894879 7894879 C G HAO1 Silent p.V159V 0.24 TCGA-21-5783-01 21 31538707 31538707 G T CLDN17 Missense_Mutation p.L77M 0.24 deleterious(0) probably_damaging(0.983) TCGA-21-5783-01 21 31692074 31692074 C T KRTAP26-1 Missense_Mutation p.G94R 0.18 deleterious(0) probably_damaging(0.994) TCGA-21-5783-01 22 22749548 22749548 T A IGLV7-43 Silent p.T24T 0.73 TCGA-21-5783-01 22 24225011 24225011 G A SLC2A11 Silent p.A320A 0.73 TCGA-21-5783-01 22 32880053 32880053 A G FBXO7 Missense_Mutation p.N196S 0.54 tolerated(1) benign(0.002) TCGA-21-5783-01 22 36680157 36680157 G A MYH9 Missense_Mutation p.S1916F 0.62 possibly_damaging(0.451) TCGA-21-5783-01 22 40658054 40658054 C G TNRC6B Missense_Mutation p.P112A 0.60 deleterious(0) probably_damaging(0.998) TCGA-21-5783-01 22 42983530 42983530 G C POLDIP3 Nonsense_Mutation p.S357* 0.65 TCGA-21-5783-01 22 50878420 50878420 G C PPP6R2 Silent p.P746P 0.46 TCGA-21-5783-01 2 103324767 103324767 G T SLC9A2 Missense_Mutation p.R753I 0.33 tolerated(0.05) benign(0.005) TCGA-21-5783-01 2 109384801 109384801 G A RANBP2 Silent p.T2602T 0.22 TCGA-21-5783-01 2 109389458 109389458 G T RANBP2 Missense_Mutation p.G2750W 0.13 deleterious(0.02) probably_damaging(0.995) TCGA-21-5783-01 2 112686798 112686798 C T MERTK Missense_Mutation p.H55Y 0.13 tolerated_low_confidence(0.07) benign(0.248) TCGA-21-5783-01 2 131103191 131103191 G A IMP4 Missense_Mutation p.E120K 0.10 tolerated(0.3) benign(0.038) TCGA-21-5783-01 2 153482050 153482050 G A FMNL2 Missense_Mutation p.E646K 0.15 possibly_damaging(0.486) TCGA-21-5783-01 2 160243080 160243080 G T BAZ2B Silent p.L1085L 0.25 TCGA-21-5783-01 2 163302538 163302538 C A KCNH7 Missense_Mutation p.G515V 0.46 deleterious(0) probably_damaging(0.989) TCGA-21-5783-01 2 167133603 167133603 G C SCN9A Missense_Mutation p.R911G 0.38 deleterious(0) probably_damaging(1) TCGA-21-5783-01 2 170470984 170470984 C G PPIG Missense_Mutation p.P130A 0.08 deleterious(0.05) benign(0.243) TCGA-21-5783-01 2 172600617 172600617 G T DYNC1I2 Missense_Mutation p.W532L 0.07 deleterious(0) possibly_damaging(0.889) TCGA-21-5783-01 2 179426442 179426442 G C TTN Silent p.S28139S 0.29 TCGA-21-5783-01 2 179429641 179429641 G T TTN Missense_Mutation p.P27073H 0.30 TCGA-21-5783-01 2 179587012 179587012 G T TTN Missense_Mutation p.S7501Y 0.24 TCGA-21-5783-01 2 179650763 179650763 C G TTN Missense_Mutation p.A728P 0.20 TCGA-21-5783-01 2 18745096 18745096 G T NT5C1B Missense_Mutation p.A600E 0.49 deleterious(0.01) possibly_damaging(0.864) TCGA-21-5783-01 2 18768816 18768816 C G NT5C1B Missense_Mutation p.E25Q 0.11 deleterious_low_confidence(0.01) benign(0.316) TCGA-21-5783-01 2 190728535 190728535 G A PMS1 Silent p.Q641Q 0.20 TCGA-21-5783-01 2 198363428 198363428 C T HSPD1 Missense_Mutation p.D49N 0.09 tolerated(0.37) benign(0.113) TCGA-21-5783-01 2 204066387 204066387 G C NBEAL1 Missense_Mutation p.V2425L 0.14 deleterious(0) benign(0.309) TCGA-21-5783-01 2 205990430 205990430 G T PARD3B Missense_Mutation p.R468L 0.18 deleterious(0) probably_damaging(0.999) TCGA-21-5783-01 2 206628522 206628522 G A NRP2 Silent p.T723T 0.22 TCGA-21-5783-01 2 207172919 207172919 C A ZDBF2 Missense_Mutation p.L1223I 0.21 tolerated(0.17) benign(0.364) TCGA-21-5783-01 2 216203570 216203570 G A ATIC Silent p.K389K 0.21 TCGA-21-5783-01 2 219346804 219346804 T C USP37 Silent p.A608A 0.45 TCGA-21-5783-01 2 219677814 219677814 G C CYP27A1 Missense_Mutation p.D338H 0.16 deleterious(0) probably_damaging(1) TCGA-21-5783-01 2 228881280 228881280 C T SPHKAP Silent p.Q1430Q 0.21 TCGA-21-5783-01 2 230638896 230638896 G C TRIP12 Missense_Mutation p.L1796V 0.12 tolerated(0.13) probably_damaging(0.992) TCGA-21-5783-01 2 233431936 233431936 G T EIF4E2 Intron 0.21 TCGA-21-5783-01 2 238726238 238726238 G T RBM44 Missense_Mutation p.V227F 0.17 tolerated(0.18) benign(0.023) TCGA-21-5783-01 2 242065689 242065689 C A PASK Missense_Mutation p.G881W 0.68 deleterious(0.01) probably_damaging(0.998) TCGA-21-5783-01 2 242157251 242157251 T G ANO7 Missense_Mutation p.I762S 0.35 deleterious(0) possibly_damaging(0.884) TCGA-21-5783-01 2 27446876 27446876 G T CAD Missense_Mutation p.G363W 0.10 deleterious(0) possibly_damaging(0.547) TCGA-21-5783-01 2 27888028 27888028 G A SLC4A1AP Missense_Mutation p.R296H 0.17 deleterious(0) benign(0.177) TCGA-21-5783-01 2 32656058 32656058 C T BIRC6 Nonsense_Mutation p.Q1050* 0.11 TCGA-21-5783-01 2 32656071 32656071 A C BIRC6 Missense_Mutation p.Q1054P 0.09 probably_damaging(0.979) TCGA-21-5783-01 2 32756558 32756558 G C BIRC6 Missense_Mutation p.M4077I 0.11 benign(0.297) TCGA-21-5783-01 2 40656318 40656318 G C SLC8A1 Missense_Mutation p.A368G 0.61 deleterious(0) probably_damaging(0.999) TCGA-21-5783-01 2 44028016 44028016 C T DYNC2LI1 Missense_Mutation p.R231C 0.10 deleterious(0) probably_damaging(0.959) TCGA-21-5783-01 2 48872227 48872227 C A STON1-GTF2A1L Missense_Mutation p.P824Q 0.60 deleterious(0) probably_damaging(1) TCGA-21-5783-01 2 55563885 55563885 C T CCDC88A Missense_Mutation p.D530N 0.46 deleterious(0.02) probably_damaging(0.994) TCGA-21-5783-01 2 70396770 70396770 C A C2orf42 Missense_Mutation p.A355S 0.59 tolerated(1) benign(0) TCGA-21-5783-01 2 70402818 70402818 C T C2orf42 Silent p.S342S 0.12 TCGA-21-5783-01 2 74043764 74043764 C T C2orf78 Missense_Mutation p.P805L 0.43 tolerated(0.07) benign(0.117) TCGA-21-5783-01 2 74086458 74086458 G T STAMBP Missense_Mutation p.E361D 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-21-5783-01 2 74688581 74688581 G A MOGS Missense_Mutation p.R779W 0.42 deleterious(0.01) possibly_damaging(0.773) TCGA-21-5783-01 2 99995539 99995539 A G EIF5B Missense_Mutation p.I634V 0.40 benign(0.124) TCGA-21-5783-01 3 100962842 100962842 G C IMPG2 Missense_Mutation p.P778R 0.13 deleterious(0) possibly_damaging(0.839) TCGA-21-5783-01 3 108572517 108572517 G A TRAT1 Silent p.K118K 0.35 TCGA-21-5783-01 3 113135369 113135369 C G WDR52 Intron 0.12 TCGA-21-5783-01 3 113380228 113380228 T C KIAA2018 Missense_Mutation p.K101E 0.38 possibly_damaging(0.459) TCGA-21-5783-01 3 113442273 113442273 T C NAA50 Silent p.G87G 0.36 TCGA-21-5783-01 3 123444844 123444844 A G MYLK Missense_Mutation p.L533P 0.13 deleterious(0) probably_damaging(0.959) TCGA-21-5783-01 3 124103707 124103707 G A KALRN Missense_Mutation p.A594T 0.30 deleterious(0.02) unknown(0) TCGA-21-5783-01 3 128696943 128696943 C A KIAA1257 Missense_Mutation p.Q251H 0.20 deleterious(0.01) probably_damaging(0.935) TCGA-21-5783-01 3 130354540 130354540 T C COL6A6 Intron 0.34 TCGA-21-5783-01 3 130405103 130405103 G A PIK3R4 Missense_Mutation p.L1143F 0.26 tolerated(0.06) probably_damaging(0.974) TCGA-21-5783-01 3 132202344 132202344 G T DNAJC13 Missense_Mutation p.Q1035H 0.28 deleterious(0.05) possibly_damaging(0.634) TCGA-21-5783-01 3 136261013 136261013 C T STAG1 Missense_Mutation p.R140Q 0.27 tolerated(0.76) benign(0.017) TCGA-21-5783-01 3 136574528 136574528 C G SLC35G2 Missense_Mutation p.S409C 0.14 deleterious(0) probably_damaging(0.937) TCGA-21-5783-01 3 138762810 138762810 T A PRR23C Missense_Mutation p.E218V 0.25 deleterious(0) probably_damaging(0.977) TCGA-21-5783-01 3 142103424 142103424 G A XRN1 Missense_Mutation p.R815C 0.14 tolerated(0.2) benign(0.011) TCGA-21-5783-01 3 147128052 147128052 C A ZIC1 Silent p.P51P 0.25 TCGA-21-5783-01 3 147128610 147128610 C T ZIC1 Silent p.N237N 0.14 TCGA-21-5783-01 3 147130315 147130315 C A ZIC1 Silent p.P331P 0.31 TCGA-21-5783-01 3 153202321 153202321 G T C3orf79 5'UTR 0.33 TCGA-21-5783-01 3 153912479 153912479 G T ARHGEF26 Missense_Mutation p.C606F 0.22 deleterious(0) probably_damaging(0.916) TCGA-21-5783-01 3 194118789 194118789 C T GP5 Missense_Mutation p.V75I 0.18 tolerated(0.13) benign(0.275) TCGA-21-5783-01 3 30842400 30842400 G T GADL1 Missense_Mutation p.R411S 0.26 deleterious(0.03) benign(0.273) TCGA-21-5783-01 3 33161899 33161899 G T CRTAP Nonsense_Mutation p.E179* 0.70 TCGA-21-5783-01 3 44943336 44943336 C T TGM4 Missense_Mutation p.A295V 0.62 deleterious(0) probably_damaging(0.999) TCGA-21-5783-01 3 45046805 45046805 G C EXOSC7 Missense_Mutation p.E172Q 0.29 tolerated(0.54) benign(0.004) TCGA-21-5783-01 3 4853065 4853065 C G ITPR1 Missense_Mutation p.F2448L 0.12 deleterious(0) probably_damaging(0.997) TCGA-21-5783-01 3 52535229 52535229 A G STAB1 Silent p.V42V 0.58 TCGA-21-5783-01 3 54958803 54958803 A T LRTM1 Silent p.T149T 0.64 TCGA-21-5783-01 3 57882686 57882686 G A SLMAP Intron 0.27 TCGA-21-5783-01 3 73432905 73432905 C A PDZRN3 Missense_Mutation p.V938L 0.47 deleterious(0) possibly_damaging(0.621) TCGA-21-5783-01 3 74385713 74385713 T - CNTN3 Frame_Shift_Del p.A488Qfs*15 0.17 TCGA-21-5783-01 3 95374435 95374438 TCTC - MTHFD2P1 RNA 0.10 TCGA-21-5783-01 3 97868617 97868617 T A OR5H14 Missense_Mutation p.L130I 0.08 deleterious(0) probably_damaging(0.999) TCGA-21-5783-01 4 100237062 100237062 A G ADH1B Missense_Mutation p.V187A 0.21 deleterious(0.04) possibly_damaging(0.746) TCGA-21-5783-01 4 1018769 1018769 C T FGFRL1 Silent p.I383I 0.18 TCGA-21-5783-01 4 101947021 101947021 G A PPP3CA 3'UTR 0.23 TCGA-21-5783-01 4 111482602 111482602 G A ENPEP Missense_Mutation p.G921E 0.51 deleterious(0) probably_damaging(1) TCGA-21-5783-01 4 115767006 115767006 G A NDST4 Silent p.P696P 0.37 TCGA-21-5783-01 4 1165654 1165654 C G SPON2 Missense_Mutation p.W69S 0.15 deleterious(0) probably_damaging(1) TCGA-21-5783-01 4 121958522 121958522 C T NDNF Missense_Mutation p.A202T 0.38 tolerated(0.19) benign(0.01) TCGA-21-5783-01 4 123663257 123663257 C G BBS12 Silent p.L70L 0.22 TCGA-21-5783-01 4 138449704 138449704 C T PCDH18 Missense_Mutation p.D890N 0.24 tolerated(0.38) benign(0.131) TCGA-21-5783-01 4 144920570 144920570 C A GYPB Missense_Mutation p.V57L 0.25 tolerated(0.2) benign(0.007) TCGA-21-5783-01 4 151153909 151153909 T A DCLK2 Missense_Mutation p.L516I 0.46 deleterious(0) probably_damaging(0.953) TCGA-21-5783-01 4 151837891 151837891 C A LRBA Splice_Site p.X216_splice 0.12 TCGA-21-5783-01 4 178231165 178231165 C A NEIL3 Missense_Mutation p.P20T 0.22 tolerated(0.24) benign(0.01) TCGA-21-5783-01 4 178896977 178896977 A - LINC01098 Frame_Shift_Del p.A61Lfs*3 0.09 TCGA-21-5783-01 4 186329110 186329110 C T UFSP2 Silent p.T367T 0.21 TCGA-21-5783-01 4 187584535 187584535 T G FAT1 Silent p.P1166P 0.30 TCGA-21-5783-01 4 26675427 26675427 C G TBC1D19 Missense_Mutation p.Q245E 0.30 deleterious(0.01) benign(0.101) TCGA-21-5783-01 4 46263896 46263896 C T GABRA2 Intron 0.20 TCGA-21-5783-01 4 55140712 55140712 C A PDGFRA Missense_Mutation p.L525I 0.44 deleterious(0.05) probably_damaging(0.997) TCGA-21-5783-01 4 5862750 5862750 C T CRMP1 Intron 0.26 TCGA-21-5783-01 4 69095073 69095073 G A TMPRSS11B Missense_Mutation p.T283I 0.29 deleterious(0.02) possibly_damaging(0.826) TCGA-21-5783-01 4 69796467 69796467 T A UGT2A3 Missense_Mutation p.K367N 0.20 deleterious(0) probably_damaging(0.984) TCGA-21-5783-01 4 69816850 69816850 T A UGT2A3 Missense_Mutation p.K210I 0.24 deleterious(0) probably_damaging(0.961) TCGA-21-5783-01 4 70810645 70810645 T G CSN1S1 Silent p.P160P 0.43 TCGA-21-5783-01 4 88903650 88903650 G C SPP1 Missense_Mutation p.D183H 0.27 deleterious(0.02) probably_damaging(0.992) TCGA-21-5783-01 4 90756761 90756761 C A SNCA Nonsense_Mutation p.E20* 0.18 TCGA-21-5783-01 4 960539 960539 G T DGKQ Missense_Mutation p.H455N 0.33 tolerated(0.45) benign(0.098) TCGA-21-5783-01 4 96762306 96762306 A T PDHA2 Missense_Mutation p.E335D 0.20 tolerated(0.2) benign(0.008) TCGA-21-5783-01 5 10403574 10403574 G T MARCH6 Missense_Mutation p.G418V 0.64 deleterious(0) probably_damaging(0.927) TCGA-21-5783-01 5 1318475 1318475 G - CLPTM1L 3'UTR 0.39 TCGA-21-5783-01 5 1335251 1335251 C T CLPTM1L Silent p.V239V 0.04 TCGA-21-5783-01 5 140181551 140181551 A T PCDHA3 Missense_Mutation p.N257Y 0.70 deleterious_low_confidence(0.01) possibly_damaging(0.554) TCGA-21-5783-01 5 140208337 140208337 G A PCDHA6 Missense_Mutation p.E221K 0.27 deleterious_low_confidence(0.04) possibly_damaging(0.63) TCGA-21-5783-01 5 140222358 140222358 G T PCDHA8 Silent p.A484A 0.62 TCGA-21-5783-01 5 140517100 140517100 C T PCDHB5 Missense_Mutation p.S695L 0.49 deleterious_low_confidence(0.01) benign(0.055) TCGA-21-5783-01 5 140788532 140788532 C A PCDHGB6 Missense_Mutation p.L255M 0.57 tolerated(0.15) possibly_damaging(0.491) TCGA-21-5783-01 5 145890195 145890195 C G TCERG1 Nonsense_Mutation p.S1096* 0.35 TCGA-21-5783-01 5 146804519 146804519 C T DPYSL3 Missense_Mutation p.R130H 0.20 deleterious(0.01) probably_damaging(0.98) TCGA-21-5783-01 5 149277948 149277948 T C PDE6A Missense_Mutation p.N462S 0.57 tolerated(0.43) benign(0.058) TCGA-21-5783-01 5 173531230 173531230 G C NSG2 Splice_Site p.X72_splice 0.62 TCGA-21-5783-01 5 17354081 17354081 G A CTD-2139B15.2 RNA 0.22 TCGA-21-5783-01 5 179043935 179043937 AAG - HNRNPH1 In_Frame_Del p.F380del 0.16 TCGA-21-5783-01 5 179707572 179707572 C T MAPK9 5'UTR 0.51 TCGA-21-5783-01 5 21854788 21854788 G T CDH12 Missense_Mutation p.P213H 0.10 deleterious(0) probably_damaging(0.992) TCGA-21-5783-01 5 36226634 36226634 T A NADK2 Missense_Mutation p.R141W 0.25 deleterious(0) probably_damaging(0.999) TCGA-21-5783-01 5 39342266 39342266 G C C9 Missense_Mutation p.S37C 0.09 deleterious(0.01) benign(0.379) TCGA-21-5783-01 5 41049517 41049517 T A MROH2B Missense_Mutation p.T456S 0.67 tolerated(0.53) benign(0.026) TCGA-21-5783-01 5 41143012 41143012 T C C6 Missense_Mutation p.K907R 0.08 tolerated(1) benign(0.01) TCGA-21-5783-01 5 45645622 45645622 T A HCN1 Missense_Mutation p.T172S 0.18 tolerated(0.31) benign(0.187) TCGA-21-5783-01 5 5303800 5303800 C A ADAMTS16 Missense_Mutation p.P1036H 0.60 deleterious(0) probably_damaging(1) TCGA-21-5783-01 5 55407590 55407590 G T ANKRD55 Missense_Mutation p.P329T 0.67 tolerated_low_confidence(0.29) benign(0.001) TCGA-21-5783-01 5 64748683 64748683 G T ADAMTS6 Missense_Mutation p.P232T 0.22 tolerated(0.13) benign(0.004) TCGA-21-5783-01 5 90025496 90025496 G T GPR98 Missense_Mutation p.M3488I 0.70 benign(0.001) TCGA-21-5783-01 5 9202347 9202347 T C SEMA5A Missense_Mutation p.N218D 0.04 deleterious(0.04) benign(0.032) TCGA-21-5783-01 5 96101757 96101757 G C CAST Missense_Mutation p.E639Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-21-5783-01 6 100911444 100911444 A G SIM1 5'UTR 0.44 TCGA-21-5783-01 6 114379048 114379048 C T HS3ST5 Nonsense_Mutation p.W138* 0.19 TCGA-21-5783-01 6 118635415 118635415 G C SLC35F1 Nonstop_Mutation p.*409Yext*8 0.40 TCGA-21-5783-01 6 129635854 129635854 G A LAMA2 Missense_Mutation p.D1156N 0.12 tolerated(0.18) benign(0.005) TCGA-21-5783-01 6 132824602 132824602 T C STX7 Missense_Mutation p.Q23R 0.17 deleterious(0.02) possibly_damaging(0.546) TCGA-21-5783-01 6 132909971 132909971 C A TAAR5 Silent p.L285L 0.08 TCGA-21-5783-01 6 13365697 13365697 G T GFOD1 Missense_Mutation p.H151N 0.51 deleterious(0.02) possibly_damaging(0.83) TCGA-21-5783-01 6 138655800 138655800 C G KIAA1244 Missense_Mutation p.I1939M 0.41 tolerated(0.15) benign(0.128) TCGA-21-5783-01 6 143090913 143090913 T A HIVEP2 Missense_Mutation p.T1655S 0.10 deleterious(0.02) probably_damaging(0.942) TCGA-21-5783-01 6 151687224 151687224 G A ZBTB2 Missense_Mutation p.S326F 0.25 tolerated(0.53) probably_damaging(0.986) TCGA-21-5783-01 6 151687371 151687371 G A ZBTB2 Missense_Mutation p.T277I 0.22 deleterious(0.01) benign(0.261) TCGA-21-5783-01 6 151687555 151687555 G A ZBTB2 Missense_Mutation p.P216S 0.15 tolerated(1) benign(0) TCGA-21-5783-01 6 151687747 151687747 G C ZBTB2 Missense_Mutation p.P152A 0.17 tolerated(0.31) benign(0) TCGA-21-5783-01 6 151687842 151687842 G C ZBTB2 Missense_Mutation p.S120C 0.19 tolerated(0.06) benign(0.343) TCGA-21-5783-01 6 152768641 152768641 C G SYNE1 Silent p.L1207L 0.10 TCGA-21-5783-01 6 163991868 163991868 C T QKI 3'UTR 0.16 TCGA-21-5783-01 6 25600607 25600607 G C LRRC16A Missense_Mutation p.R1062P 0.42 deleterious(0) probably_damaging(0.923) TCGA-21-5783-01 6 26056666 26056666 C G HIST1H1C 5'UTR 0.50 TCGA-21-5783-01 6 26465504 26465504 G T BTN2A1 Missense_Mutation p.W268C 0.30 tolerated(0.18) benign(0.001) TCGA-21-5783-01 6 27840937 27840937 G C HIST1H4L 3'UTR 0.13 TCGA-21-5783-01 6 28872408 28872408 G A TRIM27 Silent p.P327P 0.25 TCGA-21-5783-01 6 29523983 29523983 T C UBD Missense_Mutation p.K58E 0.26 tolerated(1) benign(0.032) TCGA-21-5783-01 6 31545120 31545120 C T TNF Missense_Mutation p.L170F 0.37 deleterious(0) probably_damaging(0.984) TCGA-21-5783-01 6 31735427 31735427 G A VWA7 Silent p.I536I 0.25 TCGA-21-5783-01 6 33148090 33148090 C T COL11A2 Missense_Mutation p.G349E 0.18 probably_damaging(0.969) TCGA-21-5783-01 6 34506077 34506077 C T SPDEF Missense_Mutation p.V328I 0.27 deleterious(0) probably_damaging(0.997) TCGA-21-5783-01 6 43401039 43401039 G A ABCC10 Missense_Mutation p.A441T 0.31 deleterious(0) probably_damaging(1) TCGA-21-5783-01 6 50016267 50016267 G C DEFB112 Missense_Mutation p.T33R 0.16 deleterious(0.01) possibly_damaging(0.507) TCGA-21-5783-01 6 51747942 51747942 A G PKHD1 Silent p.D2433D 0.32 TCGA-21-5783-01 6 52906045 52906057 CTCAGGCCGGACA - ICK 5'UTR 0.20 TCGA-21-5783-01 6 56918252 56918252 G A KIAA1586 Missense_Mutation p.D319N 0.33 deleterious(0.01) probably_damaging(0.964) TCGA-21-5783-01 6 70092768 70092768 C T BAI3 Silent p.L1441L 0.36 TCGA-21-5783-01 6 83848697 83848697 C G DOPEY1 Missense_Mutation p.R1646G 0.15 deleterious(0) probably_damaging(0.951) TCGA-21-5783-01 6 89322347 89322347 G A RNGTT 3'UTR 0.21 TCGA-21-5783-01 6 97063532 97063532 A - FHL5 Frame_Shift_Del p.S247Afs*19 0.23 TCGA-21-5783-01 7 100033486 100033486 C T PPP1R35 Missense_Mutation p.E146K 0.22 tolerated(0.26) benign(0.164) TCGA-21-5783-01 7 100454514 100454514 G A SLC12A9 Missense_Mutation p.R158Q 0.13 tolerated(0.99) benign(0.003) TCGA-21-5783-01 7 102669066 102669066 G T FBXL13 Missense_Mutation p.D66E 0.36 tolerated(0.61) benign(0.007) TCGA-21-5783-01 7 117431709 117431709 G A CTTNBP2 Missense_Mutation p.P514L 0.35 tolerated(0.68) benign(0.097) TCGA-21-5783-01 7 120780922 120780922 C A CPED1 Missense_Mutation p.P581T 0.32 deleterious(0) probably_damaging(0.999) TCGA-21-5783-01 7 122342514 122342514 C A RNF148 Missense_Mutation p.Q97H 0.30 tolerated(0.19) possibly_damaging(0.601) TCGA-21-5783-01 7 127014286 127014286 A C ZNF800 Nonsense_Mutation p.Y368* 0.19 TCGA-21-5783-01 7 127222211 127222211 G A GCC1 Missense_Mutation p.R729C 0.16 deleterious(0) probably_damaging(0.995) TCGA-21-5783-01 7 127229646 127229646 C T ARF5 Nonsense_Mutation p.Q86* 0.12 TCGA-21-5783-01 7 130418165 130418165 G A KLF14 Silent p.C232C 0.40 TCGA-21-5783-01 7 131866855 131866855 C A PLXNA4 Splice_Site p.X1084_splice 0.34 TCGA-21-5783-01 7 142028553 142028553 G T TRBV6-1 Missense_Mutation p.R96M 0.29 deleterious(0.05) benign(0.027) TCGA-21-5783-01 7 142032385 142032385 C A TRBV7-1 Missense_Mutation p.Q69K 0.42 tolerated(0.12) benign(0.283) TCGA-21-5783-01 7 142045619 142045619 C A TRBV4-2 Missense_Mutation p.N49K 0.13 deleterious(0) possibly_damaging(0.849) TCGA-21-5783-01 7 142460863 142460863 A G PRSS1 Missense_Mutation p.N246D 0.36 deleterious(0.01) possibly_damaging(0.453) TCGA-21-5783-01 7 142583297 142583297 G T TRPV6 5'UTR 0.17 TCGA-21-5783-01 7 146471461 146471461 A T CNTNAP2 Missense_Mutation p.N66Y 0.49 deleterious(0) probably_damaging(0.989) TCGA-21-5783-01 7 147259334 147259334 T C CNTNAP2 Missense_Mutation p.Y628H 0.34 tolerated(0.07) benign(0.03) TCGA-21-5783-01 7 149519277 149519277 C - SSPO RNA 0.18 TCGA-21-5783-01 7 152549321 152549321 C T ACTR3B Silent p.S354S 0.29 TCGA-21-5783-01 7 20795255 20795255 G C ABCB5 3'UTR 0.13 TCGA-21-5783-01 7 21901535 21901535 G T DNAH11 Missense_Mutation p.R3763L 0.31 possibly_damaging(0.71) TCGA-21-5783-01 7 27672059 27672059 T C HIBADH Silent p.V86V 0.32 TCGA-21-5783-01 7 28220098 28220098 G T JAZF1 Silent p.I33I 0.23 TCGA-21-5783-01 7 36455438 36455438 A T ANLN Silent p.T489T 0.43 TCGA-21-5783-01 7 45930259 45930259 C A IGFBP1 Silent p.A154A 0.40 TCGA-21-5783-01 7 47944138 47944138 T A PKD1L1 Nonsense_Mutation p.K590* 0.33 TCGA-21-5783-01 7 57188200 57188200 C A ZNF479 Missense_Mutation p.V308L 0.30 tolerated(0.7) benign(0.003) TCGA-21-5783-01 7 7646679 7646679 G T MIOS Missense_Mutation p.D862Y 0.20 deleterious(0) probably_damaging(1) TCGA-21-5783-01 7 79082536 79082536 C A MAGI2 Missense_Mutation p.G34V 0.33 deleterious(0) probably_damaging(1) TCGA-21-5783-01 7 794352 794352 C T HEATR2 Missense_Mutation p.P384L 0.13 tolerated(0.64) benign(0.003) TCGA-21-5783-01 7 92905500 92905500 G A CCDC132 Missense_Mutation p.M275I 0.32 deleterious(0.01) possibly_damaging(0.603) TCGA-21-5783-01 7 92905599 92905599 A G CCDC132 Silent p.Q308Q 0.32 TCGA-21-5783-01 7 98257830 98257830 C T NPTX2 Silent p.S395S 0.22 TCGA-21-5783-01 7 99227403 99227403 G C ZSCAN25 Missense_Mutation p.K465N 0.18 deleterious(0) probably_damaging(0.998) TCGA-21-5783-01 7 99998700 99998700 G A ZCWPW1 Silent p.S628S 0.39 TCGA-21-5783-01 8 103662404 103662404 G C KLF10 Missense_Mutation p.L467V 0.15 deleterious(0) probably_damaging(0.936) TCGA-21-5783-01 8 105261745 105261745 A G RIMS2 Missense_Mutation p.K1207R 0.33 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-21-5783-01 8 105263371 105263371 C A RIMS2 Missense_Mutation p.P1271T 0.48 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-21-5783-01 8 105263372 105263372 C A RIMS2 Missense_Mutation p.P1271Q 0.45 deleterious_low_confidence(0) probably_damaging(1) TCGA-21-5783-01 8 110986331 110986331 G A KCNV1 Missense_Mutation p.P96L 0.11 tolerated(1) benign(0.001) TCGA-21-5783-01 8 113237018 113237018 C A CSMD3 Silent p.T3702T 0.25 TCGA-21-5783-01 8 113332129 113332129 C T CSMD3 Splice_Site p.X2416_splice 0.19 TCGA-21-5783-01 8 120756534 120756534 T C TAF2 Missense_Mutation p.T1070A 0.08 tolerated_low_confidence(0.18) benign(0.197) TCGA-21-5783-01 8 120814211 120814217 TTCTAAT - TAF2 Frame_Shift_Del p.K203Nfs*4 0.14 TCGA-21-5783-01 8 132996389 132996389 G A EFR3A Missense_Mutation p.G527R 0.20 deleterious(0) probably_damaging(0.984) TCGA-21-5783-01 8 145755984 145755984 G C ARHGAP39 Missense_Mutation p.A1056G 0.24 tolerated(0.06) benign(0.01) TCGA-21-5783-01 8 145947533 145947533 G C ZNF251 Silent p.L504L 0.14 TCGA-21-5783-01 8 146033195 146033195 C G ZNF517 Missense_Mutation p.F298L 0.08 deleterious(0) possibly_damaging(0.453) TCGA-21-5783-01 8 25364662 25364662 G C CDCA2 Missense_Mutation p.R827T 0.36 deleterious(0.01) possibly_damaging(0.888) TCGA-21-5783-01 8 25902253 25902253 G - EBF2 Frame_Shift_Del p.A42Rfs*20 0.20 TCGA-21-5783-01 8 30704526 30704526 G T TEX15 Missense_Mutation p.Q670K 0.24 tolerated(0.07) benign(0.173) TCGA-21-5783-01 8 37689000 37689000 C A GPR124 Missense_Mutation p.S331Y 0.75 deleterious(0) possibly_damaging(0.873) TCGA-21-5783-01 8 37691532 37691532 C A GPR124 Missense_Mutation p.D498E 0.76 tolerated(0.19) possibly_damaging(0.747) TCGA-21-5783-01 8 48710876 48710876 T A PRKDC Missense_Mutation p.E3459D 0.14 benign(0.073) TCGA-21-5783-01 8 62212448 62212448 C T CLVS1 Missense_Mutation p.A21V 0.14 tolerated_low_confidence(0.11) benign(0.007) TCGA-21-5783-01 8 62212449 62212449 C G CLVS1 Silent p.A21A 0.14 TCGA-21-5783-01 8 68140212 68140212 C G ARFGEF1 Missense_Mutation p.D1193H 0.07 deleterious(0) possibly_damaging(0.903) TCGA-21-5783-01 8 68208800 68208800 C T ARFGEF1 Missense_Mutation p.G169R 0.56 tolerated(0.11) probably_damaging(0.927) TCGA-21-5783-01 8 73849171 73849171 G A KCNB2 Silent p.T527T 0.11 TCGA-21-5783-01 8 74650530 74650530 G A STAU2 5'UTR 0.13 TCGA-21-5783-01 8 77618908 77618908 G T ZFHX4 Missense_Mutation p.G862V 0.16 probably_damaging(0.979) TCGA-21-5783-01 8 77765908 77765908 C A ZFHX4 Missense_Mutation p.P2251T 0.15 probably_damaging(0.999) TCGA-21-5783-01 8 86048078 86048078 C T LRRCC1 Nonsense_Mutation p.Q737* 0.35 TCGA-21-5783-01 8 87645013 87645013 A G CNGB3 Silent p.S429S 0.26 TCGA-21-5783-01 9 130489588 130489588 G C TTC16 Missense_Mutation p.L536F 0.70 deleterious(0.02) benign(0.071) TCGA-21-5783-01 9 133901932 133901932 G T LAMC3 Missense_Mutation p.G212C 0.46 deleterious(0) probably_damaging(1) TCGA-21-5783-01 9 139835860 139835860 T C FBXW5 Missense_Mutation p.M434V 0.25 deleterious(0.01) benign(0.265) TCGA-21-5783-01 9 140051487 140051487 G C GRIN1 Missense_Mutation p.K343N 0.31 tolerated(0.33) possibly_damaging(0.493) TCGA-21-5783-01 9 140508107 140508107 C T ARRDC1 Silent p.I107I 0.47 TCGA-21-5783-01 9 19372065 19372065 A G DENND4C Missense_Mutation p.Y1875C 0.58 deleterious(0.01) probably_damaging(0.978) TCGA-21-5783-01 9 21971029 21971029 C T CDKN2A Nonsense_Mutation p.W110* 0.42 TCGA-21-5783-01 9 34646638 34646638 G A GALT 5'Flank 0.54 TCGA-21-5783-01 9 36353301 36353301 C G RNF38 Missense_Mutation p.E313Q 0.26 tolerated(0.09) possibly_damaging(0.856) TCGA-21-5783-01 9 43815972 43815972 C A CNTNAP3B Silent p.V242V 0.11 TCGA-21-5783-01 9 73477953 73477953 A G TRPM3 Silent p.N111N 0.57 TCGA-21-5783-01 9 7799525 7799525 C T TMEM261 Silent p.R70R 0.34 TCGA-21-5783-01 9 82335075 82335075 A C TLE4 Missense_Mutation p.I569L 0.54 deleterious(0.03) probably_damaging(0.986) TCGA-21-5783-01 X 100515570 100515570 G A DRP2 Missense_Mutation p.R945Q 0.38 tolerated_low_confidence(0.23) benign(0.002) TCGA-21-5783-01 X 100609675 100609675 C T BTK Missense_Mutation p.R525Q 0.31 deleterious(0) benign(0.106) TCGA-21-5783-01 X 119246814 119246815 - A RHOXF1 Frame_Shift_Ins p.A137Cfs*8 0.40 TCGA-21-5783-01 X 140996040 140996040 C T MAGEC1 Silent p.F950F 0.69 TCGA-21-5783-01 X 150912436 150912436 C - CNGA2 Frame_Shift_Del p.I487Mfs*21 0.40 TCGA-21-5783-01 X 152981079 152981079 C A BCAP31 Missense_Mutation p.G154W 0.75 deleterious(0) probably_damaging(0.997) TCGA-21-5783-01 X 37981469 37981469 G C SYTL5 Splice_Site p.X636_splice 0.61 TCGA-21-5783-01 X 41084160 41084160 G A USP9X Missense_Mutation p.C2306Y 0.63 deleterious(0) benign(0.259) TCGA-21-5783-01 X 50350986 50350986 T A SHROOM4 Silent p.P1052P 0.70 TCGA-21-5783-01 X 53600862 53600862 C A HUWE1 Nonsense_Mutation p.E2054* 0.33 TCGA-21-5783-01 X 64722001 64722001 C A ZC3H12B Missense_Mutation p.P475T 0.73 tolerated(0.33) benign(0.057) TCGA-21-5783-01 X 71401593 71401593 A G PIN4 Silent p.V11V 0.30 TCGA-21-5783-01 X 75004040 75004040 C A MAGEE2 Nonsense_Mutation p.E283* 0.74 TCGA-21-5783-01 X 75649540 75649540 C T MAGEE1 Missense_Mutation p.P406L 0.57 tolerated(0.12) benign(0.002) TCGA-21-5784-01 10 108431020 108431020 C A SORCS1 Missense_Mutation p.V722F 0.14 deleterious(0.05) benign(0.381) TCGA-21-5784-01 10 114187011 114187011 C T ACSL5 Silent p.S705S 0.13 TCGA-21-5784-01 10 118231330 118231330 G C PNLIPRP3 Missense_Mutation p.G371R 0.14 deleterious(0) possibly_damaging(0.903) TCGA-21-5784-01 10 118728205 118728205 C T KIAA1598 Missense_Mutation p.E44K 0.23 deleterious(0) probably_damaging(0.927) TCGA-21-5784-01 10 26506596 26506596 G T GAD2 Missense_Mutation p.C45F 0.25 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-21-5784-01 10 50870714 50870714 C T CHAT Silent p.D621D 0.19 TCGA-21-5784-01 11 105845170 105845170 A T GRIA4 Missense_Mutation p.K848M 0.08 deleterious(0) probably_damaging(0.993) TCGA-21-5784-01 11 124189347 124189347 G T OR8D2 Silent p.G249G 0.07 TCGA-21-5784-01 11 124743726 124743726 T A ROBO3 Silent p.A584A 0.14 TCGA-21-5784-01 11 128710050 128710050 C T KCNJ1 Missense_Mutation p.C49Y 0.11 deleterious(0) probably_damaging(0.997) TCGA-21-5784-01 11 3724058 3724058 T C NUP98 Silent p.Q1049Q 0.12 TCGA-21-5784-01 11 55587763 55587763 G T OR5D18 Missense_Mutation p.A220S 0.14 deleterious(0.04) benign(0.009) TCGA-21-5784-01 11 58170189 58170189 A G OR5B3 Missense_Mutation p.Y232H 0.07 tolerated_low_confidence(0.48) benign(0.042) TCGA-21-5784-01 11 5878401 5878401 G C OR52E8 Missense_Mutation p.R178G 0.05 tolerated(0.07) benign(0.006) TCGA-21-5784-01 11 6499300 6499300 G T ARFIP2 Silent p.L222L 0.07 TCGA-21-5784-01 11 85396970 85396970 G A CCDC89 Silent p.S68S 0.08 TCGA-21-5784-01 12 104187249 104187249 C T NT5DC3 Missense_Mutation p.A286T 0.07 tolerated(0.5) benign(0.026) TCGA-21-5784-01 12 129558378 129558378 G T TMEM132D 3'UTR 0.07 TCGA-21-5784-01 12 129566354 129566354 G T TMEM132D Missense_Mutation p.Q625K 0.10 deleterious(0.04) benign(0.06) TCGA-21-5784-01 12 14019082 14019082 C A GRIN2B Missense_Mutation p.V21L 0.16 tolerated(0.7) benign(0.002) TCGA-21-5784-01 12 14809478 14809478 C G GUCY2C Missense_Mutation p.E480Q 0.07 tolerated(0.06) probably_damaging(0.917) TCGA-21-5784-01 12 39734052 39734052 T A KIF21A Missense_Mutation p.H742L 0.10 deleterious(0) probably_damaging(0.971) TCGA-21-5784-01 12 99166848 99166848 T A ANKS1B Missense_Mutation p.Y1159F 0.14 tolerated(0.1) possibly_damaging(0.656) TCGA-21-5784-01 13 106142326 106142326 A T DAOA Nonsense_Mutation p.K120* 0.18 TCGA-21-5784-01 13 25887081 25887081 C T NUPL1 Missense_Mutation p.A116V 0.09 deleterious(0.01) benign(0.197) TCGA-21-5784-01 13 37524105 37524105 G A ALG5 Missense_Mutation p.L317F 0.12 deleterious(0.02) benign(0.031) TCGA-21-5784-01 13 37678416 37678416 T A CSNK1A1L Missense_Mutation p.Q326H 0.23 tolerated_low_confidence(0.08) probably_damaging(0.983) TCGA-21-5784-01 13 39603489 39603489 T C PROSER1 Silent p.T68T 0.08 TCGA-21-5784-01 14 20248835 20248835 G A OR4M1 Missense_Mutation p.M118I 0.08 deleterious(0) probably_damaging(0.995) TCGA-21-5784-01 14 20248836 20248836 G T OR4M1 Missense_Mutation p.A119S 0.09 deleterious(0) probably_damaging(0.999) TCGA-21-5784-01 14 30066794 30066794 G A PRKD1 Silent p.G779G 0.09 TCGA-21-5784-01 14 35231082 35231082 G A BAZ1A Missense_Mutation p.P1375L 0.08 tolerated_low_confidence(0.38) benign(0.407) TCGA-21-5784-01 14 79111646 79111646 C A NRXN3 5'UTR 0.17 TCGA-21-5784-01 14 95035794 95035794 C A SERPINA4 Missense_Mutation p.S382R 0.12 tolerated(0.52) possibly_damaging(0.908) TCGA-21-5784-01 15 25477614 25477614 C T SNORD115-34 RNA 0.04 TCGA-21-5784-01 15 25959128 25959128 C A ATP10A Silent p.S679S 0.12 TCGA-21-5784-01 15 28441375 28441375 C G HERC2 Missense_Mutation p.R2749T 0.08 possibly_damaging(0.549) TCGA-21-5784-01 15 41827820 41827820 G T RPAP1 Missense_Mutation p.A144E 0.05 tolerated(0.56) benign(0.052) TCGA-21-5784-01 15 48434509 48434509 A T SLC24A5 Silent p.G488G 0.12 TCGA-21-5784-01 15 53908393 53908393 C T WDR72 Silent p.V670V 0.09 TCGA-21-5784-01 15 56961049 56961049 T A ZNF280D Missense_Mutation p.Q506L 0.06 deleterious(0) benign(0.066) TCGA-21-5784-01 15 68118713 68118713 G A SKOR1 Missense_Mutation p.V369M 0.09 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-21-5784-01 15 79339108 79339108 G A RASGRF1 Silent p.V286V 0.10 TCGA-21-5784-01 15 85383868 85383868 G A ALPK3 Missense_Mutation p.R655K 0.06 tolerated_low_confidence(0.65) benign(0.001) TCGA-21-5784-01 16 61747770 61747770 C T CDH8 Silent p.P543P 0.12 TCGA-21-5784-01 16 85840455 85840455 A T COX4I1 Missense_Mutation p.Y162F 0.15 deleterious(0.04) benign(0.226) TCGA-21-5784-01 16 89973675 89973675 G T TCF25 Missense_Mutation p.G582W 0.16 deleterious(0.03) benign(0.432) TCGA-21-5784-01 16 89973676 89973676 G T TCF25 Missense_Mutation p.G582V 0.17 deleterious(0.01) benign(0.403) TCGA-21-5784-01 17 11572717 11572717 A G DNAH9 Missense_Mutation p.N987D 0.11 benign(0) TCGA-21-5784-01 17 18136004 18136004 C A LLGL1 Missense_Mutation p.L94I 0.10 deleterious(0.02) probably_damaging(0.984) TCGA-21-5784-01 17 2203562 2203562 C A SMG6 Missense_Mutation p.R162L 0.17 tolerated_low_confidence(0.14) benign(0.082) TCGA-21-5784-01 17 26851655 26851655 C T FOXN1 Silent p.P86P 0.25 TCGA-21-5784-01 17 30815095 30815095 C G CDK5R1 Missense_Mutation p.R153G 0.06 deleterious(0.02) possibly_damaging(0.793) TCGA-21-5784-01 17 3663533 3663533 G A ITGAE Missense_Mutation p.P216L 0.22 deleterious(0.03) possibly_damaging(0.843) TCGA-21-5784-01 17 42426621 42426621 G A GRN Missense_Mutation p.C30Y 0.06 deleterious(0) probably_damaging(0.993) TCGA-21-5784-01 17 5084833 5084833 C A ZNF594 3'UTR 0.16 TCGA-21-5784-01 17 62036723 62036723 C A SCN4A Missense_Mutation p.G641C 0.15 deleterious(0) probably_damaging(1) TCGA-21-5784-01 17 73775177 73775177 T C H3F3B Missense_Mutation p.R27G 0.21 deleterious_low_confidence(0.03) benign(0.08) TCGA-21-5784-01 17 7579414 7579414 C T TP53 Nonsense_Mutation p.W91* 0.23 TCGA-21-5784-01 18 22669518 22669518 G T ZNF521 Missense_Mutation p.Q1273K 0.15 tolerated(0.1) benign(0) TCGA-21-5784-01 18 28993227 28993227 C A DSG4 Missense_Mutation p.P950H 0.18 deleterious(0.05) probably_damaging(0.952) TCGA-21-5784-01 18 28993228 28993228 C G DSG4 Silent p.P950P 0.18 TCGA-21-5784-01 18 29126518 29126518 C T DSG2 Silent p.L1057L 0.09 TCGA-21-5784-01 18 50705330 50705330 A T DCC Splice_Site p.X473_splice 0.12 TCGA-21-5784-01 18 51887006 51887006 G C C18orf54 Missense_Mutation p.A22P 0.18 deleterious(0.01) probably_damaging(0.991) TCGA-21-5784-01 18 61022457 61022457 G T KDSR Missense_Mutation p.L133I 0.22 tolerated(1) benign(0.02) TCGA-21-5784-01 18 77794645 77794645 G C RBFA Silent p.S50S 0.06 TCGA-21-5784-01 19 12089452 12089452 G T ZNF763 Missense_Mutation p.S241I 0.10 tolerated(0.25) probably_damaging(0.914) TCGA-21-5784-01 19 23405187 23405187 T C ZNF724P Silent p.%3D 0.15 TCGA-21-5784-01 19 372678 372678 T A THEG Missense_Mutation p.E196D 0.09 deleterious(0.01) probably_damaging(0.991) TCGA-21-5784-01 19 4529157 4529157 C A PLIN5 Missense_Mutation p.A150S 0.06 tolerated(0.24) possibly_damaging(0.575) TCGA-21-5784-01 19 57328547 57328547 C T PEG3 Silent p.E421E 0.15 TCGA-21-5784-01 19 6707815 6707815 C G C3 Missense_Mutation p.R657S 0.06 deleterious(0) possibly_damaging(0.744) TCGA-21-5784-01 1 110754586 110754586 G A KCNC4 Silent p.E155E 0.16 TCGA-21-5784-01 1 111777527 111777527 A G CHI3L2 Splice_Site p.X110_splice 0.08 TCGA-21-5784-01 1 120465271 120465271 C A NOTCH2 Missense_Mutation p.V1664L 0.08 tolerated(0.62) possibly_damaging(0.826) TCGA-21-5784-01 1 12726115 12726115 C A AADACL4 Missense_Mutation p.A198E 0.12 tolerated(0.27) possibly_damaging(0.737) TCGA-21-5784-01 1 148932902 148932902 C A RP11-14N7.2 RNA 0.05 TCGA-21-5784-01 1 149783657 149783657 G A HIST2H2BF Silent p.I74I 0.06 TCGA-21-5784-01 1 152327943 152327943 G T FLG2 Missense_Mutation p.H773Q 0.23 unknown(0) TCGA-21-5784-01 1 156105054 156105054 G A LMNA Missense_Mutation p.R296H 0.10 tolerated(0.07) benign(0.052) TCGA-21-5784-01 1 156779583 156779583 C T SH2D2A Missense_Mutation p.G205E 0.09 deleterious(0) probably_damaging(1) TCGA-21-5784-01 1 157508921 157508921 C A FCRL5 Missense_Mutation p.G453C 0.09 deleterious(0) probably_damaging(1) TCGA-21-5784-01 1 157737267 157737267 A T FCRL2 Missense_Mutation p.S306T 0.18 tolerated(0.28) benign(0.009) TCGA-21-5784-01 1 158300799 158300799 T C CD1B Missense_Mutation p.S39G 0.25 tolerated(0.11) benign(0.003) TCGA-21-5784-01 1 158627340 158627340 G C SPTA1 Missense_Mutation p.A911G 0.16 deleterious(0) probably_damaging(0.999) TCGA-21-5784-01 1 158651428 158651429 - A SPTA1 Frame_Shift_Ins p.W140Cfs*13 0.26 TCGA-21-5784-01 1 158908926 158908926 A T PYHIN1 Missense_Mutation p.K156N 0.20 deleterious(0.04) benign(0.321) TCGA-21-5784-01 1 158908927 158908927 G T PYHIN1 Nonsense_Mutation p.E157* 0.19 TCGA-21-5784-01 1 160137139 160137139 G A ATP1A4 Silent p.A476A 0.05 TCGA-21-5784-01 1 160262293 160262293 C A COPA Missense_Mutation p.G990C 0.06 tolerated(0.18) benign(0.037) TCGA-21-5784-01 1 160314557 160314557 T A NCSTN Nonsense_Mutation p.L44* 0.07 TCGA-21-5784-01 1 169138704 169138704 G A NME7 Missense_Mutation p.P360L 0.22 deleterious(0) probably_damaging(0.909) TCGA-21-5784-01 1 175046900 175046900 G A TNN Missense_Mutation p.E116K 0.14 deleterious(0) probably_damaging(0.999) TCGA-21-5784-01 1 177250530 177250530 C A BRINP2 Missense_Mutation p.L740I 0.09 tolerated(0.11) probably_damaging(0.991) TCGA-21-5784-01 1 186304493 186304493 C T TPR Missense_Mutation p.E1630K 0.08 benign(0.292) TCGA-21-5784-01 1 190067166 190067166 C G BRINP3 Silent p.T761T 0.16 TCGA-21-5784-01 1 19062345 19062345 G T PAX7 Missense_Mutation p.G459C 0.10 deleterious_low_confidence(0) possibly_damaging(0.896) TCGA-21-5784-01 1 19062346 19062346 G C PAX7 Missense_Mutation p.G459A 0.11 tolerated_low_confidence(0.09) benign(0.011) TCGA-21-5784-01 1 192998516 192998516 A T UCHL5 Splice_Site p.X145_splice 0.21 TCGA-21-5784-01 1 197390837 197390837 C A CRB1 Missense_Mutation p.L627M 0.05 deleterious(0.04) possibly_damaging(0.908) TCGA-21-5784-01 1 198677286 198677287 - T PTPRC Frame_Shift_Ins p.C311Lfs*5 0.21 TCGA-21-5784-01 1 201021734 201021734 G T CACNA1S Silent p.R1302R 0.16 TCGA-21-5784-01 1 203678504 203678504 G A ATP2B4 Missense_Mutation p.D545N 0.12 tolerated(0.11) benign(0.018) TCGA-21-5784-01 1 248343741 248343741 G A OR2M2 Missense_Mutation p.G152S 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-21-5784-01 1 26349716 26349716 C A EXTL1 Silent p.G193G 0.12 TCGA-21-5784-01 1 34003047 34003047 G T CSMD2 Missense_Mutation p.P3121H 0.08 deleterious(0) probably_damaging(0.983) TCGA-21-5784-01 1 41461729 41461729 G C CTPS1 Missense_Mutation p.E287D 0.10 tolerated(0.62) benign(0.003) TCGA-21-5784-01 1 68697929 68697929 A G WLS Silent p.G18G 0.13 TCGA-21-5784-01 1 90179820 90179820 C T LRRC8C Missense_Mutation p.S564F 0.07 deleterious(0.05) benign(0.305) TCGA-21-5784-01 20 10389284 10389284 C T MKKS Missense_Mutation p.E385K 0.08 deleterious(0) probably_damaging(0.981) TCGA-21-5784-01 20 13856732 13856732 C T SEL1L2 Silent p.P352P 0.07 TCGA-21-5784-01 20 3677499 3677499 T C SIGLEC1 Missense_Mutation p.D806G 0.08 deleterious(0) probably_damaging(0.976) TCGA-21-5784-01 20 43850411 43850411 G A SEMG2 Silent p.Q46Q 0.07 TCGA-21-5784-01 20 50769200 50769200 T A ZFP64 Missense_Mutation p.I511F 0.09 tolerated(0.22) benign(0.212) TCGA-21-5784-01 20 52199112 52199112 A G ZNF217 Missense_Mutation p.L85S 0.15 deleterious(0) probably_damaging(0.993) TCGA-21-5784-01 22 17956717 17956717 G T CECR2 Missense_Mutation p.D31Y 0.08 deleterious(0) probably_damaging(1) TCGA-21-5784-01 22 38824079 38824079 C A KCNJ4 Missense_Mutation p.R20L 0.17 deleterious(0) probably_damaging(0.99) TCGA-21-5784-01 2 11323555 11323555 G C ROCK2 3'UTR 0.17 TCGA-21-5784-01 2 11911570 11911570 A T LPIN1 Nonsense_Mutation p.K170* 0.11 TCGA-21-5784-01 2 136409402 136409402 C T R3HDM1 Missense_Mutation p.L575F 0.11 tolerated(0.32) possibly_damaging(0.791) TCGA-21-5784-01 2 141232732 141232732 G T LRP1B Missense_Mutation p.N3200K 0.09 benign(0.403) TCGA-21-5784-01 2 149226272 149226272 A T MBD5 Missense_Mutation p.N254Y 0.07 tolerated(0.08) possibly_damaging(0.844) TCGA-21-5784-01 2 152501057 152501057 C A NEB Missense_Mutation p.K2523N 0.08 probably_damaging(0.934) TCGA-21-5784-01 2 165984203 165984203 C A SCN3A Missense_Mutation p.D1111Y 0.04 deleterious(0) probably_damaging(0.924) TCGA-21-5784-01 2 166892650 166892650 C T SCN1A Missense_Mutation p.V1113M 0.07 tolerated(0.06) probably_damaging(0.991) TCGA-21-5784-01 2 173349564 173349564 C G ITGA6 Nonsense_Mutation p.S535* 0.06 TCGA-21-5784-01 2 179574506 179574506 C T TTN Missense_Mutation p.E9514K 0.12 TCGA-21-5784-01 2 179590615 179590615 T A TTN Nonsense_Mutation p.K6812* 0.07 TCGA-21-5784-01 2 179632624 179632624 G C TTN Silent p.V3111V 0.05 TCGA-21-5784-01 2 180011185 180011185 C A SESTD1 Splice_Site p.X194_splice 0.08 TCGA-21-5784-01 2 210560608 210560608 G A MAP2 Silent p.E1238E 0.10 TCGA-21-5784-01 2 211469853 211469853 G C CPS1 Missense_Mutation p.V628L 0.10 tolerated(0.11) benign(0.409) TCGA-21-5784-01 2 220101721 220101721 C G GLB1L 3'UTR 0.10 TCGA-21-5784-01 2 228884364 228884364 A T SPHKAP Missense_Mutation p.D402E 0.09 tolerated(0.05) benign(0.32) TCGA-21-5784-01 2 238249779 238249779 C T COL6A3 Missense_Mutation p.D2594N 0.06 unknown(0) TCGA-21-5784-01 2 28117415 28117415 C T BRE 5'UTR 0.08 TCGA-21-5784-01 2 37241016 37241016 C G HEATR5B Missense_Mutation p.E1418Q 0.06 deleterious(0) probably_damaging(0.974) TCGA-21-5784-01 2 40656383 40656383 T C SLC8A1 Missense_Mutation p.I346M 0.08 tolerated(0.1) benign(0.016) TCGA-21-5784-01 2 79364031 79364031 G T REG1P RNA 0.07 TCGA-21-5784-01 2 84518389 84518389 G T FUNDC2P2 RNA 0.09 TCGA-21-5784-01 2 84518390 84518390 G T FUNDC2P2 RNA 0.10 TCGA-21-5784-01 2 87042686 87042686 G T CD8B 3'UTR 0.09 TCGA-21-5784-01 2 89292023 89292023 C G IGKV1-8 Missense_Mutation p.G84R 0.12 deleterious(0) probably_damaging(0.993) TCGA-21-5784-01 2 90078197 90078197 C A IGKV3D-20 Silent p.G78G 0.21 TCGA-21-5784-01 2 95715323 95715323 T C MAL Intron 0.08 TCGA-21-5784-01 3 142259785 142259785 C A ATR Missense_Mutation p.G1181V 0.12 deleterious(0) probably_damaging(0.969) TCGA-21-5784-01 3 142259786 142259786 C A ATR Missense_Mutation p.G1181C 0.12 deleterious(0.03) possibly_damaging(0.777) TCGA-21-5784-01 3 149678729 149678729 A T RNF13 Missense_Mutation p.E328D 0.07 tolerated(0.52) benign(0.031) TCGA-21-5784-01 3 164733819 164733819 G T SI Missense_Mutation p.T1270K 0.15 deleterious(0.02) possibly_damaging(0.659) TCGA-21-5784-01 3 167016091 167016091 A T ZBBX Splice_Site p.X627_splice 0.15 TCGA-21-5784-01 3 193343920 193343920 C G OPA1 Missense_Mutation p.Q222E 0.10 tolerated(1) benign(0.017) TCGA-21-5784-01 3 36872686 36872686 C T TRANK1 Silent p.E2752E 0.28 TCGA-21-5784-01 3 52526102 52526102 C G NISCH Silent p.L1373L 0.15 TCGA-21-5784-01 3 58381473 58381473 G T PXK Missense_Mutation p.R270L 0.17 deleterious(0.01) possibly_damaging(0.832) TCGA-21-5784-01 3 73114104 73114104 G C PPP4R2 Missense_Mutation p.R247T 0.13 deleterious(0) probably_damaging(0.999) TCGA-21-5784-01 3 73433601 73433601 G C PDZRN3 Missense_Mutation p.H706D 0.10 deleterious(0) probably_damaging(0.998) TCGA-21-5784-01 3 93619761 93619761 C A PROS1 Missense_Mutation p.C205F 0.27 deleterious(0) benign(0.443) TCGA-21-5784-01 3 98518445 98518445 G T DCBLD2 Missense_Mutation p.T700N 0.17 deleterious(0.03) benign(0.048) TCGA-21-5784-01 4 111482632 111482632 C T ENPEP Missense_Mutation p.T931I 0.17 deleterious(0.01) probably_damaging(0.974) TCGA-21-5784-01 4 115856388 115856388 G C NDST4 Missense_Mutation p.L504V 0.12 deleterious(0) probably_damaging(0.992) TCGA-21-5784-01 4 134075494 134075494 A T PCDH10 Silent p.L888L 0.15 TCGA-21-5784-01 4 162841620 162841620 G T FSTL5 Missense_Mutation p.H115Q 0.15 deleterious(0) probably_damaging(0.989) TCGA-21-5784-01 4 1730122 1730122 G C TACC3 Silent p.S331S 0.10 TCGA-21-5784-01 4 22389256 22389256 T C GPR125 3'UTR 0.22 TCGA-21-5784-01 4 46252293 46252293 C T GABRA2 3'UTR 0.11 TCGA-21-5784-01 4 49040076 49040076 A G CWH43 Missense_Mutation p.Q561R 0.16 deleterious(0) probably_damaging(0.998) TCGA-21-5784-01 4 6107434 6107434 C G JAKMIP1 Silent p.T130T 0.17 TCGA-21-5784-01 4 71467241 71467241 C T AMBN Missense_Mutation p.T134I 0.13 deleterious(0.05) benign(0.053) TCGA-21-5784-01 4 73941987 73941987 T C ANKRD17 Silent p.A2591A 0.21 TCGA-21-5784-01 4 74005579 74005579 T G ANKRD17 Silent p.G918G 0.13 TCGA-21-5784-01 4 9783788 9783788 C T DRD5 Silent p.C45C 0.18 TCGA-21-5784-01 5 123982838 123982838 T C ZNF608 Missense_Mutation p.Y1080C 0.17 deleterious(0) probably_damaging(0.999) TCGA-21-5784-01 5 140564188 140564188 C T PCDHB16 Missense_Mutation p.S685L 0.05 tolerated_low_confidence(0.22) benign(0.001) TCGA-21-5784-01 5 154395721 154395721 C T KIF4B Missense_Mutation p.L768F 0.20 deleterious(0.01) possibly_damaging(0.882) TCGA-21-5784-01 5 22078623 22078623 C A CDH12 Missense_Mutation p.G55C 0.41 deleterious(0) probably_damaging(0.982) TCGA-21-5784-01 5 33624455 33624455 A C ADAMTS12 Missense_Mutation p.M675R 0.13 tolerated(0.54) benign(0.002) TCGA-21-5784-01 5 33649789 33649789 G T ADAMTS12 Missense_Mutation p.H402N 0.35 deleterious(0) probably_damaging(0.952) TCGA-21-5784-01 5 35857040 35857040 C A IL7R 5'UTR 0.33 TCGA-21-5784-01 5 41181587 41181587 T C C6 Silent p.Q267Q 0.41 TCGA-21-5784-01 5 5237108 5237108 A G ADAMTS16 Missense_Mutation p.I684V 0.06 tolerated(0.1) benign(0.23) TCGA-21-5784-01 5 82816206 82816206 T C VCAN Missense_Mutation p.M694T 0.15 tolerated(0.1) benign(0.093) TCGA-21-5784-01 6 117710738 117710738 T A ROS1 Missense_Mutation p.T512S 0.11 deleterious(0) probably_damaging(0.997) TCGA-21-5784-01 6 129722441 129722441 G A LAMA2 Missense_Mutation p.D1840N 0.22 tolerated(0.33) benign(0.009) TCGA-21-5784-01 6 24556934 24556934 G T KIAA0319 Missense_Mutation p.H920N 0.16 deleterious(0) probably_damaging(0.999) TCGA-21-5784-01 6 27114908 27114908 A G HIST1H2AH Translation_Start_Site p.M1? 0.20 tolerated_low_confidence(0.05) unknown(0) TCGA-21-5784-01 6 51752042 51752042 C A PKHD1 Missense_Mutation p.G2333V 0.14 deleterious(0.03) probably_damaging(0.99) TCGA-21-5784-01 6 74521937 74521937 G A CD109 Missense_Mutation p.V1238I 0.14 tolerated(0.19) benign(0.006) TCGA-21-5784-01 6 75847265 75847265 A T COL12A1 Missense_Mutation p.V1761E 0.27 probably_damaging(0.999) TCGA-21-5784-01 7 100855937 100855937 C G PLOD3 Splice_Site p.X294_splice 0.17 TCGA-21-5784-01 7 11464372 11464372 C A THSD7A Missense_Mutation p.V1112L 0.14 tolerated(0.2) possibly_damaging(0.679) TCGA-21-5784-01 7 128486411 128486411 C T FLNC Nonsense_Mutation p.R1341* 0.18 TCGA-21-5784-01 7 25266386 25266386 C T NPVF Missense_Mutation p.R133K 0.15 deleterious(0) probably_damaging(0.99) TCGA-21-5784-01 7 25266428 25266428 C T NPVF Missense_Mutation p.S119N 0.14 tolerated(0.4) probably_damaging(0.935) TCGA-21-5784-01 7 38389199 38389199 A G TRGV5 Silent p.A37A 0.11 TCGA-21-5784-01 7 50097591 50097591 T A ZPBP Missense_Mutation p.I161L 0.08 tolerated(0.08) benign(0.125) TCGA-21-5784-01 7 81588591 81588591 C A CACNA2D1 Missense_Mutation p.L1053F 0.17 tolerated(0.07) benign(0.043) TCGA-21-5784-01 7 88956788 88956788 G C ZNF804B Missense_Mutation p.C127S 0.17 deleterious(0) possibly_damaging(0.798) TCGA-21-5784-01 7 95499246 95499246 G T DYNC1I1 Silent p.L159L 0.16 TCGA-21-5784-01 8 113326784 113326784 G C CSMD3 Missense_Mutation p.P2475A 0.16 deleterious(0.02) probably_damaging(0.955) TCGA-21-5784-01 8 121509646 121509646 G A MTBP Silent p.L487L 0.20 TCGA-21-5784-01 8 124664148 124664148 A T KLHL38 Missense_Mutation p.M340K 0.25 tolerated(0.21) benign(0.011) TCGA-21-5784-01 8 130762676 130762676 C - GSDMC Splice_Site p.X361_splice 0.19 TCGA-21-5784-01 8 13959919 13959919 C A SGCZ Missense_Mutation p.R237M 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-21-5784-01 8 139601533 139601533 C A COL22A1 Missense_Mutation p.S1615I 0.22 unknown(0) TCGA-21-5784-01 8 139733018 139733018 T A COL22A1 Missense_Mutation p.R773S 0.10 unknown(0) TCGA-21-5784-01 8 30702473 30702473 A T TEX15 Nonsense_Mutation p.L1354* 0.20 TCGA-21-5784-01 8 41397202 41397202 G A GINS4 Silent p.E101E 0.08 TCGA-21-5784-01 8 42015516 42015516 G C AP3M2 Missense_Mutation p.E111Q 0.08 tolerated(0.48) possibly_damaging(0.449) TCGA-21-5784-01 8 67577946 67577946 A G VCPIP1 Silent p.A416A 0.13 TCGA-21-5784-01 8 77620155 77620155 A G ZFHX4 Missense_Mutation p.K989E 0.12 possibly_damaging(0.486) TCGA-21-5784-01 8 81412556 81412556 A G ZBTB10 Silent p.S600S 0.33 TCGA-21-5784-01 8 87680270 87680270 G T CNGB3 Missense_Mutation p.P207Q 0.12 deleterious(0.01) benign(0.178) TCGA-21-5784-01 8 93003993 93003993 G T RUNX1T1 Missense_Mutation p.L300M 0.09 tolerated(0.08) benign(0.062) TCGA-21-5784-01 9 115805640 115805640 G C ZFP37 Missense_Mutation p.L420V 0.07 tolerated(0.1) possibly_damaging(0.788) TCGA-21-5784-01 9 120475061 120475061 C A TLR4 Missense_Mutation p.Q219K 0.07 deleterious(0.01) benign(0.223) TCGA-21-5784-01 9 123675906 123675906 C A TRAF1 Missense_Mutation p.E135D 0.20 tolerated(0.39) benign(0) TCGA-21-5784-01 9 123874791 123874791 G A CNTRL Missense_Mutation p.E353K 0.11 probably_damaging(0.999) TCGA-21-5784-01 9 125423912 125423912 A G OR1L1 5'Flank 0.15 TCGA-21-5784-01 9 129455563 129455563 C T LMX1B Silent p.F234F 0.18 TCGA-21-5784-01 9 138379288 138379288 G T PPP1R26 Missense_Mutation p.G978C 0.17 deleterious(0) probably_damaging(0.991) TCGA-21-5784-01 9 139100587 139100587 T G QSOX2 Missense_Mutation p.H695P 0.10 tolerated(0.17) benign(0.004) TCGA-21-5784-01 9 27949789 27949789 G T LINGO2 Missense_Mutation p.S294Y 0.16 tolerated(1) benign(0.183) TCGA-21-5784-01 9 32635006 32635006 G C TAF1L Missense_Mutation p.A191G 0.10 tolerated_low_confidence(0.14) probably_damaging(0.989) TCGA-21-5784-01 9 78965771 78965771 G C PCSK5 Missense_Mutation p.C1638S 0.04 deleterious(0.01) benign(0.423) TCGA-21-5784-01 9 84608660 84608660 C T SPATA31D1 Missense_Mutation p.P1092L 0.08 tolerated(0.57) benign(0.069) TCGA-21-5784-01 9 90502826 90502826 G T SPATA31E1 Missense_Mutation p.D1142Y 0.08 tolerated(0.05) possibly_damaging(0.688) TCGA-21-5784-01 X 107454957 107454957 T C COL4A6 Missense_Mutation p.Q153R 0.09 unknown(0) TCGA-21-5784-01 X 107454958 107454958 G T COL4A6 Missense_Mutation p.Q153K 0.09 unknown(0) TCGA-21-5784-01 X 117576644 117576644 G T WDR44 Splice_Site p.X795_splice 0.17 TCGA-21-5784-01 X 120182743 120182743 C A GLUD2 Missense_Mutation p.A402D 0.08 deleterious(0) probably_damaging(0.967) TCGA-21-5784-01 X 122831592 122831592 G T THOC2 Missense_Mutation p.T95K 0.27 deleterious(0) possibly_damaging(0.677) TCGA-21-5784-01 X 123514829 123514829 C G TENM1 Missense_Mutation p.G2586R 0.07 tolerated(0.1) possibly_damaging(0.616) TCGA-21-5784-01 X 123540170 123540170 G T TENM1 Missense_Mutation p.Q1718K 0.06 deleterious(0.04) benign(0.002) TCGA-21-5784-01 X 128645952 128645952 C A SMARCA1 Silent p.G213G 0.08 TCGA-21-5784-01 X 128940418 128940418 G T ZDHHC9 Missense_Mutation p.S341R 0.16 tolerated(0.24) benign(0) TCGA-21-5784-01 X 130409717 130409717 C G IGSF1 Missense_Mutation p.L978F 0.05 deleterious(0.01) probably_damaging(1) TCGA-21-5784-01 X 135475695 135475695 A T GPR112 Missense_Mutation p.N2679I 0.08 deleterious(0.01) benign(0.335) TCGA-21-5784-01 X 138886687 138886687 G T ATP11C Silent p.T169T 0.04 TCGA-21-5784-01 X 138886688 138886688 G T ATP11C Missense_Mutation p.T169N 0.05 tolerated(0.19) benign(0.006) TCGA-21-5784-01 X 140995782 140995782 G T MAGEC1 Missense_Mutation p.L864F 0.08 tolerated_low_confidence(0.07) unknown(0) TCGA-21-5784-01 X 1424412 1424412 G C CSF2RA Missense_Mutation p.E407Q 0.09 deleterious(0.04) benign(0.347) TCGA-21-5784-01 X 150770012 150770012 T C PASD1 5'UTR 0.10 TCGA-21-5784-01 X 151870130 151870130 G A MAGEA6 Missense_Mutation p.G274S 0.06 deleterious(0.02) probably_damaging(1) TCGA-21-5784-01 X 153580937 153580937 G T FLNA Silent p.L2162L 0.06 TCGA-21-5784-01 X 153698898 153698898 G T PLXNA3 Missense_Mutation p.Q1700H 0.08 deleterious(0) probably_damaging(0.999) TCGA-21-5784-01 X 155235072 155235072 G T IL9R Nonsense_Mutation p.E237* 0.11 TCGA-21-5784-01 X 18822080 18822080 G T PPEF1 Missense_Mutation p.G379V 0.06 deleterious(0) probably_damaging(1) TCGA-21-5784-01 X 21875391 21875391 G A YY2 Silent p.K263K 0.05 TCGA-21-5784-01 X 24760118 24760118 G C POLA1 Splice_Site p.X777_splice 0.19 TCGA-21-5784-01 X 26212947 26212947 T A MAGEB6 Silent p.A328A 0.09 TCGA-21-5784-01 X 30578234 30578234 C A CXorf21 Missense_Mutation p.R80I 0.11 tolerated(0.08) benign(0.109) TCGA-21-5784-01 X 34149282 34149282 C A FAM47A Missense_Mutation p.G372W 0.14 deleterious(0.04) possibly_damaging(0.82) TCGA-21-5784-01 X 37026659 37026659 G T FAM47C Missense_Mutation p.R59L 0.06 deleterious(0.03) benign(0.225) TCGA-21-5784-01 X 37029127 37029127 T G FAM47C Missense_Mutation p.Y882D 0.06 tolerated(0.09) benign(0.054) TCGA-21-5784-01 X 39933450 39933450 G A BCOR Silent p.F383F 0.13 TCGA-21-5784-01 X 46918459 46918459 C A JADE3 Missense_Mutation p.H818N 0.09 deleterious_low_confidence(0.01) benign(0.002) TCGA-21-5784-01 X 48542349 48542349 T A WAS Missense_Mutation p.F36Y 0.09 deleterious(0.01) possibly_damaging(0.881) TCGA-21-5784-01 X 49032071 49032071 C A PRICKLE3 Missense_Mutation p.R600L 0.07 tolerated_low_confidence(0.07) benign(0.029) TCGA-21-5784-01 X 49957892 49957892 G T AKAP4 Missense_Mutation p.T491N 0.09 deleterious(0) possibly_damaging(0.876) TCGA-21-5784-01 X 64738141 64738141 C A LAS1L Missense_Mutation p.K551N 0.11 tolerated(0.32) benign(0.004) TCGA-21-5784-01 X 73507007 73507007 T C MIR545 RNA 0.12 TCGA-21-5784-01 X 76937558 76937558 C T ATRX Missense_Mutation p.A1064T 0.09 benign(0.001) TCGA-21-5786-01 10 101090567 101090567 A G CNNM1 Missense_Mutation p.I475V 0.46 deleterious(0.02) probably_damaging(0.992) TCGA-21-5786-01 10 101371025 101371025 G A SLC25A28 Missense_Mutation p.R226C 0.33 deleterious(0.02) probably_damaging(1) TCGA-21-5786-01 10 101514391 101514391 G A CUTC Missense_Mutation p.R236Q 0.27 deleterious(0) benign(0.248) TCGA-21-5786-01 10 106737162 106737162 C A SORCS3 Missense_Mutation p.Q289K 0.36 deleterious(0) possibly_damaging(0.844) TCGA-21-5786-01 10 108339127 108339127 C A SORCS1 Missense_Mutation p.R1124M 0.22 deleterious(0) probably_damaging(0.999) TCGA-21-5786-01 10 112357972 112357972 C G SMC3 Missense_Mutation p.S731C 0.34 tolerated(0.07) probably_damaging(0.962) TCGA-21-5786-01 10 119013857 119013857 G T SLC18A2 Intron 0.30 TCGA-21-5786-01 10 120801831 120801831 C A EIF3A Silent p.R1067R 0.31 TCGA-21-5786-01 10 124175428 124175428 G T PLEKHA1 Silent p.R174R 0.38 TCGA-21-5786-01 10 134671215 134671215 G T TTC40 Missense_Mutation p.A1818D 0.43 deleterious(0) probably_damaging(0.988) TCGA-21-5786-01 10 35500642 35500642 C T CREM Nonsense_Mutation p.R272* 0.54 TCGA-21-5786-01 10 35500644 35500644 A C CREM Silent p.R272R 0.54 TCGA-21-5786-01 10 38343433 38343433 T A ZNF33A Missense_Mutation p.N127K 0.51 deleterious(0.04) benign(0.006) TCGA-21-5786-01 10 52103495 52103495 T A SGMS1 Missense_Mutation p.Q127L 0.40 tolerated(0.29) benign(0.003) TCGA-21-5786-01 10 54529030 54529030 G A MBL2 Missense_Mutation p.T117I 0.30 deleterious(0.01) benign(0.004) TCGA-21-5786-01 10 55582004 55582004 G T PCDH15 Missense_Mutation p.P1830T 0.33 deleterious_low_confidence(0.01) unknown(0) TCGA-21-5786-01 10 55582375 55582375 C A PCDH15 Missense_Mutation p.R1706M 0.34 tolerated_low_confidence(0.45) benign(0.007) TCGA-21-5786-01 10 63212657 63212657 G A TMEM26 Silent p.G61G 0.45 TCGA-21-5786-01 10 7239578 7239578 T C SFMBT2 Missense_Mutation p.N544D 0.52 deleterious(0) probably_damaging(0.998) TCGA-21-5786-01 10 75231333 75231333 T C PPP3CB Missense_Mutation p.M188V 0.20 deleterious(0.02) possibly_damaging(0.847) TCGA-21-5786-01 10 88451677 88451677 C A LDB3 Silent p.A306A 0.32 TCGA-21-5786-01 10 88985864 88985864 G A NUTM2A Missense_Mutation p.G93S 0.65 tolerated_low_confidence(0.37) benign(0) TCGA-21-5786-01 11 10785972 10785972 G T CTR9 Missense_Mutation p.G468W 0.49 deleterious(0.01) probably_damaging(0.946) TCGA-21-5786-01 11 116717266 116717266 C A SIK3 Missense_Mutation p.C1213F 0.37 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-21-5786-01 11 118981774 118981783 CAAGTGGAGC - C2CD2L Frame_Shift_Del p.Q232Sfs*7 0.30 TCGA-21-5786-01 11 119103223 119103223 G A CBL Silent p.L87L 0.17 TCGA-21-5786-01 11 119149393 119149393 C A CBL Silent p.L467L 0.07 TCGA-21-5786-01 11 123810823 123810823 C A OR4D5 Missense_Mutation p.P167Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-21-5786-01 11 130079677 130079677 C G ST14 Missense_Mutation p.P843A 0.43 tolerated(0.1) benign(0.015) TCGA-21-5786-01 11 132812855 132812855 C A OPCML Missense_Mutation p.V45L 0.21 tolerated(0.18) benign(0.426) TCGA-21-5786-01 11 133790758 133790758 C - IGSF9B Frame_Shift_Del p.P956Lfs*37 0.45 TCGA-21-5786-01 11 20699477 20699477 G A NELL1 Splice_Site p.X19_splice 0.60 TCGA-21-5786-01 11 2985954 2985954 G A NAP1L4 Silent p.L188L 0.41 TCGA-21-5786-01 11 31312327 31312327 C A DCDC1 Missense_Mutation p.R276L 0.56 tolerated(0.07) benign(0.362) TCGA-21-5786-01 11 43344985 43344985 A T API5 Silent p.L183L 0.52 TCGA-21-5786-01 11 46407307 46407307 C G CHRM4 Silent p.L267L 0.22 TCGA-21-5786-01 11 49805436 49805436 C A RP11-707M1.1 RNA 0.41 TCGA-21-5786-01 11 50003963 50003963 C A OR4C12 Silent p.T25T 0.17 TCGA-21-5786-01 11 5529644 5529644 G - UBQLN3 Frame_Shift_Del p.P382Hfs*20 0.42 TCGA-21-5786-01 11 55606555 55606555 G C OR5D16 Missense_Mutation p.V110L 0.22 deleterious(0.02) possibly_damaging(0.844) TCGA-21-5786-01 11 55703463 55703463 C T OR5I1 Missense_Mutation p.M138I 0.29 deleterious(0.02) probably_damaging(0.914) TCGA-21-5786-01 11 55761731 55761731 G T OR5F1 Missense_Mutation p.A124E 0.13 deleterious(0) benign(0.079) TCGA-21-5786-01 11 56043272 56043272 G T OR5T1 Missense_Mutation p.G53V 0.17 deleterious(0) probably_damaging(0.948) TCGA-21-5786-01 11 56043836 56043836 A C OR5T1 Missense_Mutation p.Q241P 0.38 tolerated(0.21) benign(0.001) TCGA-21-5786-01 11 56043837 56043837 G T OR5T1 Missense_Mutation p.Q241H 0.38 tolerated(1) benign(0.001) TCGA-21-5786-01 11 56143666 56143666 C T OR8U1 Silent p.C189C 0.12 TCGA-21-5786-01 11 56230024 56230024 G T OR5M9 Missense_Mutation p.P285H 0.19 deleterious(0) probably_damaging(0.986) TCGA-21-5786-01 11 56230412 56230412 T C OR5M9 Missense_Mutation p.I156V 0.43 tolerated(0.62) benign(0.008) TCGA-21-5786-01 11 56380693 56380693 C A OR5M1 Nonsense_Mutation p.G96* 0.23 TCGA-21-5786-01 11 57268684 57268684 G C SLC43A1 Silent p.T91T 0.41 TCGA-21-5786-01 11 57886380 57886380 A C OR9I1 Missense_Mutation p.C179W 0.36 deleterious(0) probably_damaging(1) TCGA-21-5786-01 11 5842195 5842195 G T OR52N2 Silent p.V210V 0.53 TCGA-21-5786-01 11 60068526 60068526 G C MS4A4A Missense_Mutation p.G128A 0.15 tolerated(0.08) benign(0.104) TCGA-21-5786-01 11 62620459 62620459 T G SLC3A2 5'Flank 0.42 TCGA-21-5786-01 11 62749475 62749475 C A SLC22A6 Missense_Mutation p.E212D 0.33 deleterious(0) probably_damaging(0.988) TCGA-21-5786-01 11 66617769 66617769 G A PC Silent p.S880S 0.35 TCGA-21-5786-01 11 94963997 94963997 C T SESN3 Missense_Mutation p.A10T 0.57 tolerated_low_confidence(0.1) benign(0) TCGA-21-5786-01 12 100043274 100043274 C T FAM71C 3'UTR 0.40 TCGA-21-5786-01 12 104390537 104390537 G A GLT8D2 Silent p.D192D 0.16 TCGA-21-5786-01 12 110780213 110780213 A C ATP2A2 Missense_Mutation p.I760L 0.11 deleterious(0) probably_damaging(0.998) TCGA-21-5786-01 12 110780229 110780229 C T ATP2A2 Missense_Mutation p.S765L 0.15 deleterious(0) probably_damaging(1) TCGA-21-5786-01 12 113444232 113444232 G A OAS2 Missense_Mutation p.G495S 0.40 tolerated(0.06) benign(0.302) TCGA-21-5786-01 12 12483101 12483101 G C MANSC1 Missense_Mutation p.L386V 0.39 deleterious(0) probably_damaging(0.994) TCGA-21-5786-01 12 125626810 125626810 G T AACS 3'UTR 0.25 TCGA-21-5786-01 12 126138840 126138840 C T TMEM132B Missense_Mutation p.H941Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-21-5786-01 12 13768106 13768106 T A GRIN2B Silent p.T532T 0.44 TCGA-21-5786-01 12 1749057 1749057 G T WNT5B Missense_Mutation p.R179L 0.43 deleterious(0.01) possibly_damaging(0.578) TCGA-21-5786-01 12 18234228 18234228 A G RERGL Missense_Mutation p.I172T 0.35 tolerated(0.18) benign(0.002) TCGA-21-5786-01 12 18241849 18241849 A T RERGL Missense_Mutation p.Y33N 0.36 deleterious(0) probably_damaging(0.989) TCGA-21-5786-01 12 21243002 21243002 G A SLCO1B7 Missense_Mutation p.D629N 0.29 tolerated(1) benign(0) TCGA-21-5786-01 12 21349910 21349910 G C SLCO1B1 Missense_Mutation p.R253P 0.40 deleterious(0) probably_damaging(0.997) TCGA-21-5786-01 12 27950953 27950953 G T KLHL42 Missense_Mutation p.V458F 0.44 tolerated(0.06) possibly_damaging(0.675) TCGA-21-5786-01 12 2933282 2933282 G T ITFG2 Missense_Mutation p.A423S 0.46 tolerated(0.72) benign(0.044) TCGA-21-5786-01 12 40714870 40714870 C G LRRK2 Missense_Mutation p.H1684D 0.35 tolerated(0.05) possibly_damaging(0.677) TCGA-21-5786-01 12 41463898 41463898 G T CNTN1 3'UTR 0.34 TCGA-21-5786-01 12 43822445 43822445 C A ADAMTS20 Missense_Mutation p.W1216L 0.20 deleterious(0.01) probably_damaging(0.959) TCGA-21-5786-01 12 43860456 43860456 C A ADAMTS20 Missense_Mutation p.D456Y 0.18 deleterious(0) probably_damaging(0.986) TCGA-21-5786-01 12 4736244 4736244 C A AKAP3 Missense_Mutation p.K608N 0.06 tolerated(0.4) probably_damaging(0.917) TCGA-21-5786-01 12 48107147 48107147 A G ENDOU Missense_Mutation p.F259S 0.22 deleterious(0) probably_damaging(0.991) TCGA-21-5786-01 12 51488962 51488962 T A TFCP2 3'UTR 0.15 TCGA-21-5786-01 12 52408988 52408988 G T GRASP 3'UTR 0.17 TCGA-21-5786-01 12 52408989 52408989 G T GRASP 3'UTR 0.17 TCGA-21-5786-01 12 53823386 53823386 C T AMHR2 Nonsense_Mutation p.Q373* 0.17 TCGA-21-5786-01 12 54920461 54920461 C T NCKAP1L Missense_Mutation p.A769V 0.16 tolerated(1) benign(0.004) TCGA-21-5786-01 12 5708742 5708742 G C ANO2 Missense_Mutation p.T714S 0.16 tolerated(0.56) benign(0.002) TCGA-21-5786-01 12 57587745 57587745 G T LRP1 Missense_Mutation p.R2623L 0.11 possibly_damaging(0.812) TCGA-21-5786-01 12 6085427 6085427 C T VWF Splice_Site p.X2430_splice 0.39 TCGA-21-5786-01 12 62946856 62946856 C A MON2 Missense_Mutation p.P1038T 0.15 deleterious(0) probably_damaging(0.99) TCGA-21-5786-01 12 72056843 72056843 C A ZFC3H1 Missense_Mutation p.G183V 0.42 tolerated(0.13) probably_damaging(0.953) TCGA-21-5786-01 12 72956818 72956818 C - TRHDE Frame_Shift_Del p.N635Kfs*9 0.29 TCGA-21-5786-01 12 7342810 7342810 G T PEX5 Intron 0.59 TCGA-21-5786-01 12 79611379 79611379 C G SYT1 Missense_Mutation p.T27R 0.18 tolerated(0.05) benign(0.269) TCGA-21-5786-01 12 80750251 80750254 ATTG - OTOGL Frame_Shift_Del p.I1947Lfs*19 0.15 TCGA-21-5786-01 12 81101699 81101699 C A MYF6 Silent p.G67G 0.27 TCGA-21-5786-01 12 88376963 88376963 G A C12orf50 Missense_Mutation p.T379M 0.38 tolerated(0.47) benign(0.005) TCGA-21-5786-01 12 9016433 9016433 C A A2ML1 Missense_Mutation p.N1182K 0.40 tolerated(0.23) benign(0.258) TCGA-21-5786-01 12 91347960 91347960 G T CCER1 Missense_Mutation p.P187H 0.18 deleterious(0.01) possibly_damaging(0.746) TCGA-21-5786-01 13 101936327 101936327 A T NALCN Missense_Mutation p.V364E 0.76 deleterious(0) possibly_damaging(0.791) TCGA-21-5786-01 13 109496795 109496795 G T MYO16 Missense_Mutation p.S379I 0.76 deleterious(0.02) benign(0.288) TCGA-21-5786-01 13 20038618 20038618 G C TPTE2 Missense_Mutation p.S240C 0.49 deleterious(0) probably_damaging(0.971) TCGA-21-5786-01 13 32729647 32729647 G A FRY Missense_Mutation p.R500Q 0.63 deleterious(0) probably_damaging(1) TCGA-21-5786-01 13 49794875 49794875 C A MLNR Silent p.V134V 0.70 TCGA-21-5786-01 13 49794876 49794876 G T MLNR Nonsense_Mutation p.E135* 0.70 TCGA-21-5786-01 13 51963478 51963478 C A INTS6 Missense_Mutation p.G239V 0.53 deleterious(0) probably_damaging(0.999) TCGA-21-5786-01 13 52693542 52693542 G T NEK5 Missense_Mutation p.Q43K 0.58 tolerated(1) benign(0.038) TCGA-21-5786-01 14 101423527 101423527 C T SNORD114-6 RNA 0.11 TCGA-21-5786-01 14 101530870 101530870 A T MIR541 RNA 0.13 TCGA-21-5786-01 14 105406363 105406363 G - AHNAK2 Frame_Shift_Del p.P5142Qfs*2 0.22 TCGA-21-5786-01 14 106757888 106757888 G T IGHV2-26 Missense_Mutation p.T40N 0.61 deleterious(0) probably_damaging(1) TCGA-21-5786-01 14 20248696 20248696 G - OR4M1 Frame_Shift_Del p.W72Cfs*12 0.44 TCGA-21-5786-01 14 20444238 20444238 T C OR4K15 Silent p.T187T 0.69 TCGA-21-5786-01 14 47504487 47504487 G T MDGA2 Missense_Mutation p.P516T 0.24 deleterious(0.04) probably_damaging(0.999) TCGA-21-5786-01 14 51446186 51446186 G T TRIM9 Missense_Mutation p.N663K 0.36 deleterious(0) probably_damaging(0.998) TCGA-21-5786-01 14 59113158 59113158 G T DACT1 Missense_Mutation p.R606L 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-21-5786-01 14 60749954 60749954 C T PPM1A Missense_Mutation p.A251V 0.57 deleterious(0) probably_damaging(1) TCGA-21-5786-01 14 71455316 71455316 C T PCNX Missense_Mutation p.R782C 0.41 deleterious(0.01) possibly_damaging(0.77) TCGA-21-5786-01 14 73238547 73238547 T G DPF3 Silent p.S29S 0.36 TCGA-21-5786-01 14 75302033 75302033 C T YLPM1 Silent p.V2120V 0.26 TCGA-21-5786-01 14 79432646 79432646 T A NRXN3 Missense_Mutation p.S519T 0.05 tolerated(0.1) possibly_damaging(0.688) TCGA-21-5786-01 14 79434533 79434533 G T NRXN3 Missense_Mutation p.G623C 0.45 deleterious(0.03) probably_damaging(0.999) TCGA-21-5786-01 14 88454828 88454828 G A GALC Missense_Mutation p.R79C 0.33 deleterious(0) probably_damaging(0.958) TCGA-21-5786-01 14 88892720 88892720 G T SPATA7 Nonsense_Mutation p.E173* 0.20 TCGA-21-5786-01 14 91386632 91386632 C A RPS6KA5 Missense_Mutation p.G242C 0.16 deleterious(0) probably_damaging(1) TCGA-21-5786-01 14 93677055 93677055 G C RP11-371E8.4 Splice_Site p.X134_splice 0.57 TCGA-21-5786-01 14 94953751 94953751 C T SERPINA12 Missense_Mutation p.M378I 0.46 tolerated(0.1) probably_damaging(0.995) TCGA-21-5786-01 14 99961950 99961950 T A CCNK Missense_Mutation p.F132Y 0.14 tolerated(0.17) probably_damaging(0.923) TCGA-21-5786-01 15 102345983 102345983 C T OR4F6 Missense_Mutation p.R21W 0.35 tolerated_low_confidence(1) benign(0) TCGA-21-5786-01 15 20651270 20651270 T C HERC2P3 RNA 0.18 TCGA-21-5786-01 15 20658901 20658901 T A HERC2P3 RNA 0.15 TCGA-21-5786-01 15 23890379 23890379 G A MAGEL2 Silent p.V234V 0.29 TCGA-21-5786-01 15 24921562 24921562 G T NPAP1 Missense_Mutation p.G183V 0.29 tolerated(0.06) probably_damaging(0.987) TCGA-21-5786-01 15 25315636 25315636 G A SNORD116-8 RNA 0.29 TCGA-21-5786-01 15 25448260 25448260 C A SNORD115-20 5'Flank 0.40 TCGA-21-5786-01 15 28096622 28096622 C A OCA2 Splice_Site p.X749_splice 0.31 TCGA-21-5786-01 15 33872198 33872198 C A RYR3 Silent p.A430A 0.57 TCGA-21-5786-01 15 43571926 43571926 G A TGM7 Silent p.I525I 0.42 TCGA-21-5786-01 15 50897096 50897096 C A TRPM7 Missense_Mutation p.Q985H 0.50 tolerated(1) benign(0.008) TCGA-21-5786-01 15 54305590 54305590 G T UNC13C Nonsense_Mutation p.E164* 0.40 TCGA-21-5786-01 15 66223228 66223228 C A MEGF11 Silent p.S447S 0.36 TCGA-21-5786-01 15 73408948 73408948 A T NEO1 Missense_Mutation p.R66S 0.31 deleterious(0) probably_damaging(0.999) TCGA-21-5786-01 15 73414925 73414925 A G NEO1 Missense_Mutation p.I170V 0.06 tolerated(1) benign(0.003) TCGA-21-5786-01 15 82575389 82575389 G T FAM154B Missense_Mutation p.V395L 0.37 tolerated(0.27) benign(0.01) TCGA-21-5786-01 15 99796311 99796311 G T LRRC28 Missense_Mutation p.R50M 0.36 deleterious(0) probably_damaging(0.974) TCGA-21-5786-01 16 25232839 25232839 G C AQP8 Missense_Mutation p.V108L 0.48 tolerated(1) benign(0.002) TCGA-21-5786-01 16 30123732 30123732 G A GDPD3 Silent p.H126H 0.39 TCGA-21-5786-01 16 32894038 32894038 G A RP11-989E6.3 5'Flank 0.43 TCGA-21-5786-01 16 48117870 48117870 G T ABCC12 Missense_Mutation p.L1315I 0.39 tolerated(0.87) benign(0.37) TCGA-21-5786-01 16 48117871 48117871 G T ABCC12 Silent p.R1314R 0.39 TCGA-21-5786-01 16 51174581 51174581 C T SALL1 Missense_Mutation p.D518N 0.32 deleterious(0) probably_damaging(0.979) TCGA-21-5786-01 16 55855365 55855365 T C CES1 Missense_Mutation p.Q203R 0.47 deleterious(0.01) possibly_damaging(0.745) TCGA-21-5786-01 16 56936405 56936405 G A SLC12A3 Silent p.T956T 0.38 TCGA-21-5786-01 16 57550347 57550347 C T CCDC102A Missense_Mutation p.G426D 0.52 tolerated(0.27) benign(0.1) TCGA-21-5786-01 16 58585531 58585531 T A CNOT1 Missense_Mutation p.T1055S 0.37 tolerated(0.39) benign(0.001) TCGA-21-5786-01 16 61859083 61859083 G T CDH8 Missense_Mutation p.A223D 0.35 deleterious(0) probably_damaging(0.942) TCGA-21-5786-01 16 67221658 67221658 C A EXOC3L1 Missense_Mutation p.E170D 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-21-5786-01 16 67322470 67322470 G C PLEKHG4 Missense_Mutation p.G1178A 0.39 deleterious(0.02) benign(0.09) TCGA-21-5786-01 16 77331223 77331223 C G ADAMTS18 Missense_Mutation p.E922Q 0.43 tolerated(0.13) benign(0.029) TCGA-21-5786-01 16 84050257 84050257 C A SLC38A8 Silent p.G343G 0.05 TCGA-21-5786-01 16 84270958 84270958 C T KCNG4 Missense_Mutation p.R45Q 0.35 tolerated(0.37) benign(0.03) TCGA-21-5786-01 16 89816153 89816153 A G FANCA Missense_Mutation p.L1075P 0.26 deleterious(0) possibly_damaging(0.766) TCGA-21-5786-01 17 10555834 10555834 T A MYH3 Missense_Mutation p.K84M 0.61 deleterious(0) benign(0.119) TCGA-21-5786-01 17 10728806 10728806 G T PIRT Missense_Mutation p.R53S 0.47 tolerated(0.12) benign(0.441) TCGA-21-5786-01 17 21730967 21730967 C A UBBP4 Missense_Mutation p.T90N 0.44 deleterious(0.03) possibly_damaging(0.805) TCGA-21-5786-01 17 32483084 32483084 G A ASIC2 Silent p.F156F 0.58 TCGA-21-5786-01 17 36708191 36708191 C A SRCIN1 Missense_Mutation p.K886N 0.27 tolerated(0.33) benign(0.114) TCGA-21-5786-01 17 44060623 44060623 C A MAPT Silent p.S151S 0.21 TCGA-21-5786-01 17 62859304 62859304 C T LRRC37A3 Intron 0.32 TCGA-21-5786-01 17 66303806 66303806 A C ARSG Missense_Mutation p.T58P 0.24 tolerated(0.06) benign(0.049) TCGA-21-5786-01 17 75471523 75471523 G A SEPT9 Intron 0.56 TCGA-21-5786-01 17 7578461 7578461 C A TP53 Missense_Mutation p.V157F 0.49 deleterious(0) probably_damaging(0.997) TCGA-21-5786-01 17 79612085 79612085 C A TSPAN10 Missense_Mutation p.P35H 0.78 deleterious(0) probably_damaging(0.95) TCGA-21-5786-01 17 79634874 79634874 A G CCDC137 Missense_Mutation p.K84E 0.42 deleterious(0.02) probably_damaging(0.928) TCGA-21-5786-01 17 9808247 9808247 T C RCVRN Missense_Mutation p.K84R 0.71 tolerated(0.89) benign(0.155) TCGA-21-5786-01 18 14105711 14105711 C A ZNF519 Missense_Mutation p.R276S 0.26 tolerated(0.37) benign(0.01) TCGA-21-5786-01 18 14124370 14124371 AG - ZNF519 Frame_Shift_Del p.N36Kfs*41 0.28 TCGA-21-5786-01 18 28923500 28923500 G T DSG1 Missense_Mutation p.G592V 0.49 deleterious(0) possibly_damaging(0.884) TCGA-21-5786-01 18 3534287 3534287 C G DLGAP1 Missense_Mutation p.W795S 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-21-5786-01 18 51013254 51013254 C A DCC Missense_Mutation p.P1275Q 0.45 tolerated(0.6) probably_damaging(0.981) TCGA-21-5786-01 18 56148967 56148967 G T ALPK2 3'UTR 0.48 TCGA-21-5786-01 18 60021677 60021677 G T TNFRSF11A Missense_Mutation p.A113S 0.45 deleterious(0.02) possibly_damaging(0.825) TCGA-21-5786-01 18 61305235 61305235 G A SERPINB4 Silent p.D297D 0.07 TCGA-21-5786-01 18 706489 706489 C A ENOSF1 Silent p.L79L 0.32 TCGA-21-5786-01 18 76753214 76753214 A T SALL3 Missense_Mutation p.E408V 0.69 deleterious(0) possibly_damaging(0.893) TCGA-21-5786-01 18 77477959 77477959 G T CTDP1 Missense_Mutation p.R787L 0.57 tolerated_low_confidence(0.06) benign(0.048) TCGA-21-5786-01 18 905402 905402 C A ADCYAP1 Missense_Mutation p.S5R 0.26 deleterious(0.03) benign(0.149) TCGA-21-5786-01 19 11326504 11326504 G A DOCK6 Nonsense_Mutation p.R1332* 0.20 TCGA-21-5786-01 19 11657765 11657765 T A CNN1 Missense_Mutation p.L124H 0.58 deleterious(0) probably_damaging(0.997) TCGA-21-5786-01 19 11759237 11759237 C T ZNF833P RNA 0.11 TCGA-21-5786-01 19 14805852 14805852 G T ZNF333 Nonsense_Mutation p.E12* 0.54 TCGA-21-5786-01 19 22364051 22364051 T A ZNF676 Silent p.L156L 0.52 TCGA-21-5786-01 19 22817179 22817179 C A ZNF492 5'UTR 0.40 TCGA-21-5786-01 19 22847119 22847119 G C ZNF492 Missense_Mutation p.K216N 0.36 deleterious(0.01) probably_damaging(0.991) TCGA-21-5786-01 19 2413858 2413858 C A TMPRSS9 Missense_Mutation p.A438D 0.56 tolerated(0.12) benign(0.439) TCGA-21-5786-01 19 2853168 2853168 G T ZNF555 Nonsense_Mutation p.E369* 0.25 TCGA-21-5786-01 19 36549728 36549728 G T WDR62 Missense_Mutation p.G75V 0.21 deleterious(0) probably_damaging(0.998) TCGA-21-5786-01 19 40901961 40901972 CACGTCGGGAAC - PRX In_Frame_Del p.V763_V766del 0.39 TCGA-21-5786-01 19 42351680 42351680 C T DMRTC2 Missense_Mutation p.L62F 0.32 tolerated(0.08) probably_damaging(1) TCGA-21-5786-01 19 44008084 44008084 T C PHLDB3 Missense_Mutation p.S63G 0.35 deleterious(0.04) probably_damaging(0.99) TCGA-21-5786-01 19 45822920 45822920 C A CKM Nonsense_Mutation p.E18* 0.35 TCGA-21-5786-01 19 50333387 50333387 C T MED25 Missense_Mutation p.P244L 0.40 tolerated(0.14) benign(0.067) TCGA-21-5786-01 19 51175289 51175289 C T SHANK1 Missense_Mutation p.R887Q 0.23 benign(0.134) TCGA-21-5786-01 19 51329080 51329080 C T KLK15 Nonsense_Mutation p.W248* 0.36 TCGA-21-5786-01 19 55144657 55144657 C A LILRB1 Silent p.P383P 0.32 TCGA-21-5786-01 19 55805501 55805501 G C BRSK1 Missense_Mutation p.G192A 0.34 deleterious(0.03) possibly_damaging(0.865) TCGA-21-5786-01 19 56443683 56443683 C T NLRP13 5'Flank 0.44 TCGA-21-5786-01 19 58849997 58849997 A G ZSCAN22 Missense_Mutation p.T261A 0.38 tolerated(0.19) benign(0.022) TCGA-21-5786-01 19 58906108 58906108 C G RPS5 Silent p.S202S 0.27 TCGA-21-5786-01 19 8130877 8130877 C G FBN3 Missense_Mutation p.G2786R 0.67 tolerated(0.71) benign(0.003) TCGA-21-5786-01 1 100350190 100350190 G T AGL Missense_Mutation p.S871I 0.08 tolerated(0.11) benign(0.197) TCGA-21-5786-01 1 103488510 103488510 C A COL11A1 Nonsense_Mutation p.G345* 0.46 TCGA-21-5786-01 1 14108874 14108874 G T PRDM2 Missense_Mutation p.Q1528H 0.54 unknown(0) TCGA-21-5786-01 1 156828411 156828411 C T INSRR Translation_Start_Site p.M1? 0.19 deleterious_low_confidence(0.02) benign(0.019) TCGA-21-5786-01 1 158576496 158576496 C A OR10Z1 Missense_Mutation p.Q90K 0.19 tolerated(0.71) benign(0.002) TCGA-21-5786-01 1 158736077 158736077 G T OR6N1 Nonsense_Mutation p.Y132* 0.25 TCGA-21-5786-01 1 160151781 160151781 A T ATP1A4 Missense_Mutation p.T977S 0.30 deleterious(0.05) benign(0.24) TCGA-21-5786-01 1 161697367 161697367 G A FCRLB Missense_Mutation p.R399Q 0.15 tolerated_low_confidence(0.15) benign(0.032) TCGA-21-5786-01 1 169586577 169586577 C A SELP Missense_Mutation p.R57L 0.47 deleterious(0) probably_damaging(0.954) TCGA-21-5786-01 1 175335252 175335252 G T TNR Silent p.L692L 0.42 TCGA-21-5786-01 1 176668393 176668393 G A PAPPA2 Silent p.L968L 0.40 TCGA-21-5786-01 1 177906551 177906551 C G SEC16B Silent p.L767L 0.45 TCGA-21-5786-01 1 180061849 180061849 G T CEP350 Missense_Mutation p.Q2203H 0.33 benign(0.003) TCGA-21-5786-01 1 181620509 181620509 G A CACNA1E Silent p.L329L 0.29 TCGA-21-5786-01 1 190067323 190067323 C T BRINP3 Missense_Mutation p.R709H 0.45 deleterious(0) probably_damaging(0.996) TCGA-21-5786-01 1 200017815 200017815 C A NR5A2 Missense_Mutation p.Q327K 0.35 deleterious(0.02) possibly_damaging(0.879) TCGA-21-5786-01 1 201825050 201825050 C G IPO9 Missense_Mutation p.I370M 0.39 tolerated(0.16) possibly_damaging(0.688) TCGA-21-5786-01 1 203466142 203466142 G T OPTC Missense_Mutation p.S90I 0.24 tolerated(0.22) benign(0.194) TCGA-21-5786-01 1 20827763 20827763 T G MUL1 Missense_Mutation p.H160P 0.09 deleterious(0) probably_damaging(0.992) TCGA-21-5786-01 1 208390374 208390374 G A PLXNA2 Silent p.F298F 0.38 TCGA-21-5786-01 1 211447576 211447576 A T RCOR3 Missense_Mutation p.K109M 0.48 deleterious(0) possibly_damaging(0.859) TCGA-21-5786-01 1 216824386 216824386 G T ESRRG Missense_Mutation p.T178K 0.19 deleterious(0) probably_damaging(0.997) TCGA-21-5786-01 1 226173095 226173095 G A SDE2 Missense_Mutation p.R422W 0.43 deleterious(0) probably_damaging(1) TCGA-21-5786-01 1 228433333 228433333 G C OBSCN Missense_Mutation p.G1326A 0.22 probably_damaging(1) TCGA-21-5786-01 1 229771178 229771178 A T URB2 Missense_Mutation p.N273I 0.38 tolerated(0.22) benign(0.125) TCGA-21-5786-01 1 232600782 232600782 C A SIPA1L2 Missense_Mutation p.G875V 0.30 deleterious(0) probably_damaging(1) TCGA-21-5786-01 1 236925901 236925901 C A ACTN2 Nonsense_Mutation p.Y889* 0.32 TCGA-21-5786-01 1 237619948 237619948 A T RYR2 Missense_Mutation p.S509C 0.18 probably_damaging(0.968) TCGA-21-5786-01 1 240370304 240370304 A G FMN2 Missense_Mutation p.K731R 0.34 unknown(0) TCGA-21-5786-01 1 242042374 242042374 G T EXO1 Missense_Mutation p.G613V 0.38 deleterious(0.01) possibly_damaging(0.887) TCGA-21-5786-01 1 243449593 243449593 A T SDCCAG8 Missense_Mutation p.K147I 0.36 deleterious(0) probably_damaging(0.999) TCGA-21-5786-01 1 244217443 244217443 A G ZBTB18 Missense_Mutation p.K123E 0.52 deleterious(0) probably_damaging(0.99) TCGA-21-5786-01 1 248129356 248129356 C A OR2AK2 Missense_Mutation p.F241L 0.13 tolerated(0.81) benign(0.029) TCGA-21-5786-01 1 248458694 248458694 G A OR2T12 Nonsense_Mutation p.Q63* 0.61 TCGA-21-5786-01 1 248551010 248551010 T C OR2T6 Missense_Mutation p.V34A 0.24 deleterious(0.01) benign(0.06) TCGA-21-5786-01 1 248636960 248636960 G T OR2T3 Silent p.G103G 0.14 TCGA-21-5786-01 1 248652100 248652100 T A OR2T5 Missense_Mutation p.S71T 0.09 deleterious(0) probably_damaging(0.999) TCGA-21-5786-01 1 248722582 248722582 A T OR2T29 Missense_Mutation p.S71T 0.19 deleterious(0) probably_damaging(0.999) TCGA-21-5786-01 1 248756338 248756338 G T OR2T10 Missense_Mutation p.H244Q 0.29 deleterious(0) probably_damaging(0.996) TCGA-21-5786-01 1 3544178 3544178 G T TPRG1L Silent p.P195P 0.23 TCGA-21-5786-01 1 41979252 41979252 C A HIVEP3 Missense_Mutation p.E1880D 0.61 benign(0.003) TCGA-21-5786-01 1 43738664 43738664 G A TMEM125 Missense_Mutation p.V91M 0.38 deleterious(0.03) benign(0.041) TCGA-21-5786-01 1 53108615 53108615 T A FAM159A Missense_Mutation p.L88Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-21-5786-01 1 67861305 67861305 A G IL12RB2 Missense_Mutation p.S708G 0.32 tolerated(0.11) benign(0.071) TCGA-21-5786-01 1 75078365 75078371 CAAGCCT - C1orf173 Frame_Shift_Del p.R375Efs*48 0.67 TCGA-21-5786-01 1 76387906 76387906 G T ASB17 Missense_Mutation p.N180K 0.46 tolerated(0.29) possibly_damaging(0.727) TCGA-21-5786-01 1 85124070 85124070 G C SSX2IP Missense_Mutation p.Q337E 0.36 deleterious(0.01) possibly_damaging(0.684) TCGA-21-5786-01 1 89322963 89322963 C A GTF2B Missense_Mutation p.R248M 0.45 deleterious(0) probably_damaging(0.993) TCGA-21-5786-01 20 21689284 21689284 C A PAX1 Silent p.P335P 0.18 TCGA-21-5786-01 20 23016271 23016271 C G SSTR4 Missense_Mutation p.Q51E 0.60 deleterious(0.01) benign(0.366) TCGA-21-5786-01 20 23065047 23065047 G T CD93 Missense_Mutation p.L595I 0.16 deleterious(0.02) possibly_damaging(0.871) TCGA-21-5786-01 20 24524213 24524213 G A SYNDIG1 Silent p.E160E 0.18 TCGA-21-5786-01 20 25259697 25259697 C A PYGB Missense_Mutation p.A335D 0.55 deleterious(0) probably_damaging(1) TCGA-21-5786-01 20 29614288 29614288 G C FRG1B 5'UTR 0.34 TCGA-21-5786-01 20 36850858 36850858 C T KIAA1755 Missense_Mutation p.D804N 0.32 tolerated(0.06) probably_damaging(0.929) TCGA-21-5786-01 20 43607148 43607148 G T STK4 Missense_Mutation p.V61F 0.42 deleterious(0) probably_damaging(0.981) TCGA-21-5786-01 20 44236610 44236610 C G WFDC9 3'UTR 0.52 TCGA-21-5786-01 20 4713279 4713279 A T PRNT Missense_Mutation p.L15H 0.23 deleterious_low_confidence(0) probably_damaging(0.941) TCGA-21-5786-01 20 50049180 50049180 C T NFATC2 Missense_Mutation p.E716K 0.44 tolerated(0.45) benign(0.18) TCGA-21-5786-01 20 5554612 5554612 C T GPCPD1 Silent p.L335L 0.53 TCGA-21-5786-01 20 61340679 61340679 C G NTSR1 Silent p.G40G 0.43 TCGA-21-5786-01 21 10863046 10863046 C A IGHV1OR21-1 Nonsense_Mutation p.Y114* 0.51 TCGA-21-5786-01 21 11038800 11038800 G T BAGE2 RNA 0.18 TCGA-21-5786-01 21 31744283 31744283 G T KRTAP13-2 Silent p.P83P 0.74 TCGA-21-5786-01 21 32513449 32513449 C A TIAM1 Missense_Mutation p.G1254V 0.60 deleterious(0.04) benign(0.029) TCGA-21-5786-01 21 45494322 45494322 G T TRAPPC10 Missense_Mutation p.V386L 0.41 deleterious(0.04) possibly_damaging(0.459) TCGA-21-5786-01 22 17073187 17073187 G T CCT8L2 Missense_Mutation p.P85Q 0.30 deleterious(0) probably_damaging(1) TCGA-21-5786-01 22 20780198 20780198 C T SCARF2 Missense_Mutation p.E694K 0.22 tolerated(0.33) benign(0.009) TCGA-21-5786-01 22 26272168 26272168 G A MYO18B Missense_Mutation p.A1365T 0.24 deleterious(0) probably_damaging(1) TCGA-21-5786-01 22 29092887 29092887 A G CHEK2 Splice_Site p.X408_splice 0.47 TCGA-21-5786-01 22 32586857 32586857 A T RFPL2 Missense_Mutation p.S347T 0.38 tolerated(0.13) possibly_damaging(0.649) TCGA-21-5786-01 22 32937569 32937569 T C SYN3 Missense_Mutation p.Y302C 0.45 deleterious(0) unknown(0) TCGA-21-5786-01 22 35809887 35809887 C A MCM5 Missense_Mutation p.R371S 0.48 deleterious(0.01) probably_damaging(0.996) TCGA-21-5786-01 22 37602607 37602607 C G SSTR3 Silent p.T412T 0.45 TCGA-21-5786-01 22 40080432 40080432 C T CACNA1I Missense_Mutation p.P1986S 0.22 tolerated(0.17) possibly_damaging(0.641) TCGA-21-5786-01 22 40367156 40367156 G T GRAP2 3'UTR 0.35 TCGA-21-5786-01 22 40662558 40662558 G T TNRC6B Missense_Mutation p.G775V 0.50 tolerated(0.23) benign(0.02) TCGA-21-5786-01 22 41565529 41565529 G A EP300 Missense_Mutation p.D1399N 0.33 probably_damaging(1) TCGA-21-5786-01 22 42159237 42159237 A T MEI1 Missense_Mutation p.D727V 0.19 deleterious(0.04) possibly_damaging(0.839) TCGA-21-5786-01 2 10582277 10582277 C A ODC1 Silent p.A258A 0.65 TCGA-21-5786-01 2 114257438 114257438 G T FOXD4L1 Missense_Mutation p.R202L 0.71 deleterious(0) probably_damaging(1) TCGA-21-5786-01 2 120847927 120847927 A T EPB41L5 Missense_Mutation p.K293I 0.79 deleterious(0) probably_damaging(0.942) TCGA-21-5786-01 2 135893434 135893434 C T RAB3GAP1 Missense_Mutation p.R619W 0.51 deleterious(0) probably_damaging(0.999) TCGA-21-5786-01 2 145157072 145157072 G T ZEB2 Missense_Mutation p.T561N 0.05 tolerated(0.17) benign(0.003) TCGA-21-5786-01 2 166514429 166514429 C A CSRNP3 Missense_Mutation p.Q103K 0.37 tolerated(0.11) probably_damaging(0.968) TCGA-21-5786-01 2 168105796 168105796 A T XIRP2 Missense_Mutation p.T2632S 0.45 benign(0.015) TCGA-21-5786-01 2 179631324 179631324 G C TTN Missense_Mutation p.R3163G 0.65 TCGA-21-5786-01 2 179644751 179644751 C A TTN Silent p.V1235V 0.49 TCGA-21-5786-01 2 181927572 181927572 A G UBE2E3 Missense_Mutation p.H194R 0.58 deleterious(0) probably_damaging(1) TCGA-21-5786-01 2 183843592 183843592 T A NCKAP1 Missense_Mutation p.N471Y 0.16 deleterious(0) possibly_damaging(0.891) TCGA-21-5786-01 2 186669956 186669956 T A FSIP2 Missense_Mutation p.I5397N 0.06 possibly_damaging(0.756) TCGA-21-5786-01 2 207171568 207171568 A T ZDBF2 Missense_Mutation p.K772N 0.57 tolerated(0.42) possibly_damaging(0.775) TCGA-21-5786-01 2 207176300 207176300 G T ZDBF2 Missense_Mutation p.G2350C 0.38 tolerated(0.13) probably_damaging(0.965) TCGA-21-5786-01 2 211158470 211158470 G T MYL1 Missense_Mutation p.S178Y 0.06 deleterious(0) probably_damaging(0.978) TCGA-21-5786-01 2 219501078 219501078 T A PLCD4 Silent p.I715I 0.19 TCGA-21-5786-01 2 220472790 220472790 C T STK11IP Missense_Mutation p.P425L 0.58 deleterious(0.01) benign(0.049) TCGA-21-5786-01 2 228882373 228882373 C A SPHKAP Missense_Mutation p.R1066L 0.11 deleterious(0) probably_damaging(0.994) TCGA-21-5786-01 2 237489723 237489723 C G ACKR3 Missense_Mutation p.I205M 0.05 tolerated(0.22) benign(0.016) TCGA-21-5786-01 2 241401910 241401910 C T GPC1 Missense_Mutation p.R210C 0.60 deleterious(0) probably_damaging(0.953) TCGA-21-5786-01 2 3593369 3593369 C G RNASEH1 3'UTR 0.58 TCGA-21-5786-01 2 49189880 49189880 G T FSHR Missense_Mutation p.Q694K 0.23 tolerated_low_confidence(0.54) benign(0.002) TCGA-21-5786-01 2 61412642 61412642 G C AHSA2 Missense_Mutation p.Q27H 0.06 tolerated(0.11) benign(0.003) TCGA-21-5786-01 2 63282959 63282959 G C OTX1 Silent p.V191V 0.32 TCGA-21-5786-01 2 71789016 71789016 C A DYSF Missense_Mutation p.P784H 0.19 deleterious(0.04) benign(0.269) TCGA-21-5786-01 2 71795186 71795186 G A DYSF Missense_Mutation p.G891R 0.21 deleterious(0) probably_damaging(0.997) TCGA-21-5786-01 2 73716954 73716954 G C ALMS1 Missense_Mutation p.R2622T 0.10 possibly_damaging(0.481) TCGA-21-5786-01 2 74136211 74136211 C T ACTG2 Silent p.A132A 0.20 TCGA-21-5786-01 2 74140623 74140623 G T ACTG2 Missense_Mutation p.D155Y 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-21-5786-01 2 74699237 74699237 T C MRPL53 3'UTR 0.53 TCGA-21-5786-01 2 75115034 75115034 G C HK2 Missense_Mutation p.E742Q 0.09 deleterious(0) probably_damaging(1) TCGA-21-5786-01 2 79349232 79349232 G T REG1A Missense_Mutation p.G101V 0.20 deleterious(0) probably_damaging(0.997) TCGA-21-5786-01 2 79384779 79384779 C A REG3A Missense_Mutation p.V127L 0.20 tolerated(0.45) benign(0.011) TCGA-21-5786-01 2 89513182 89513182 A C IGKV1-27 Missense_Mutation p.M26R 0.30 deleterious(0) possibly_damaging(0.784) TCGA-21-5786-01 2 90229292 90229292 G T IGKV1D-42 Nonsense_Mutation p.G38* 0.20 TCGA-21-5786-01 2 90249332 90249332 C A IGKV1D-43 Silent p.T96T 0.25 TCGA-21-5786-01 3 107097078 107097078 C A CCDC54 Missense_Mutation p.P215H 0.33 tolerated(0.06) probably_damaging(0.961) TCGA-21-5786-01 3 111298029 111298029 T A CD96 Silent p.I249I 0.37 TCGA-21-5786-01 3 118621385 118621385 C A IGSF11 Silent p.R426R 0.29 TCGA-21-5786-01 3 120461371 120461371 C A RABL3 5'UTR 0.36 TCGA-21-5786-01 3 121414947 121414947 C A GOLGB1 Nonsense_Mutation p.E1475* 0.34 TCGA-21-5786-01 3 126138990 126138990 C A CCDC37 Silent p.R334R 0.30 TCGA-21-5786-01 3 126220715 126220715 A G UROC1 Missense_Mutation p.C327R 0.33 tolerated(0.34) benign(0.001) TCGA-21-5786-01 3 12791327 12791327 T A TMEM40 Missense_Mutation p.E2V 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-21-5786-01 3 130464034 130464034 G C PIK3R4 Missense_Mutation p.P10R 0.45 deleterious(0) probably_damaging(0.992) TCGA-21-5786-01 3 132182590 132182590 A G DNAJC13 Silent p.E607E 0.25 TCGA-21-5786-01 3 147109008 147109008 G A ZIC4 Silent p.F288F 0.38 TCGA-21-5786-01 3 149087804 149087804 G C TM4SF1 Intron 0.43 TCGA-21-5786-01 3 150398609 150398609 G T FAM194A Missense_Mutation p.H331N 0.23 deleterious(0.01) probably_damaging(0.95) TCGA-21-5786-01 3 155198600 155198600 C G PLCH1 3'UTR 0.56 TCGA-21-5786-01 3 157034940 157034940 C A VEPH1 Missense_Mutation p.G596C 0.32 deleterious(0) probably_damaging(0.999) TCGA-21-5786-01 3 160102367 160102367 A G IFT80 Silent p.L8L 0.23 TCGA-21-5786-01 3 160226054 160226054 C A KPNA4 Missense_Mutation p.A405S 0.30 tolerated(0.26) benign(0.024) TCGA-21-5786-01 3 164906718 164906718 C G SLITRK3 Missense_Mutation p.G634A 0.35 tolerated(0.68) benign(0.006) TCGA-21-5786-01 3 164908356 164908356 G C SLITRK3 Missense_Mutation p.S88C 0.35 deleterious(0.04) possibly_damaging(0.885) TCGA-21-5786-01 3 172835144 172835144 C T SPATA16 Silent p.K126K 0.38 TCGA-21-5786-01 3 39374082 39374082 C A CCR8 Missense_Mutation p.S87Y 0.51 deleterious(0) probably_damaging(0.996) TCGA-21-5786-01 3 46899752 46899752 C A MYL3 Missense_Mutation p.K190N 0.67 deleterious(0.01) probably_damaging(0.944) TCGA-21-5786-01 3 48476522 48476522 G A CCDC51 Missense_Mutation p.P6L 0.33 deleterious_low_confidence(0.04) benign(0.079) TCGA-21-5786-01 3 75481963 75481963 T A RP11-803B1.8 5'Flank 0.42 TCGA-21-5786-01 3 81640303 81640303 G A GBE1 Missense_Mutation p.S374L 0.33 deleterious(0) possibly_damaging(0.904) TCGA-21-5786-01 3 89259464 89259464 C T EPHA3 Missense_Mutation p.P203L 0.36 tolerated(0.14) probably_damaging(0.994) TCGA-21-5786-01 3 9874874 9874874 G A TTLL3 Silent p.R690R 0.44 TCGA-21-5786-01 4 109784501 109784501 C T COL25A1 Missense_Mutation p.G376R 0.52 deleterious(0) probably_damaging(1) TCGA-21-5786-01 4 110441621 110441621 G T SEC24B Missense_Mutation p.L742F 0.60 deleterious(0.02) probably_damaging(0.961) TCGA-21-5786-01 4 114275181 114275181 C A ANK2 Missense_Mutation p.H1803N 0.53 benign(0.062) TCGA-21-5786-01 4 134075502 134075502 G C PCDH10 Missense_Mutation p.R891T 0.44 deleterious(0.05) benign(0.298) TCGA-21-5786-01 4 187535395 187535395 T C FAT1 Missense_Mutation p.Y3060C 0.51 probably_damaging(0.997) TCGA-21-5786-01 4 20598066 20598066 A C SLIT2 Missense_Mutation p.M1117L 0.08 tolerated(0.16) possibly_damaging(0.801) TCGA-21-5786-01 4 22748973 22748973 C A GBA3 Missense_Mutation p.P114H 0.23 deleterious(0) probably_damaging(0.996) TCGA-21-5786-01 4 22749246 22749246 G A GBA3 Nonsense_Mutation p.W205* 0.31 TCGA-21-5786-01 4 22749605 22749605 G C GBA3 Missense_Mutation p.G325R 0.25 deleterious(0.04) probably_damaging(0.968) TCGA-21-5786-01 4 3318114 3318114 A T RGS12 Nonsense_Mutation p.K73* 0.22 TCGA-21-5786-01 4 40439916 40439916 C A RBM47 Missense_Mutation p.R332M 0.26 deleterious(0.01) benign(0.243) TCGA-21-5786-01 4 41984529 41984529 T A DCAF4L1 Missense_Mutation p.F240L 0.27 tolerated(0.17) benign(0.128) TCGA-21-5786-01 4 46305618 46305618 C A GABRA2 Missense_Mutation p.V239L 0.27 tolerated(0.06) benign(0.327) TCGA-21-5786-01 4 55152076 55152076 C G PDGFRA Missense_Mutation p.D836E 0.22 deleterious(0.01) probably_damaging(1) TCGA-21-5786-01 4 55970937 55970937 G T KDR Missense_Mutation p.S620R 0.19 tolerated(0.14) benign(0.278) TCGA-21-5786-01 4 55987285 55987285 G T KDR Missense_Mutation p.T47K 0.30 tolerated(0.05) benign(0.002) TCGA-21-5786-01 4 57164494 57164494 G T KIAA1211 Silent p.L33L 0.19 TCGA-21-5786-01 4 70361033 70361033 G T UGT2B4 Missense_Mutation p.H183N 0.57 tolerated(0.1) benign(0.013) TCGA-21-5786-01 4 77661306 77661306 A G SHROOM3 Silent p.S660S 0.43 TCGA-21-5786-01 5 1208963 1208963 G T SLC6A19 Missense_Mutation p.G102V 0.50 deleterious(0) probably_damaging(0.998) TCGA-21-5786-01 5 140558652 140558652 C A PCDHB8 Missense_Mutation p.P346Q 0.07 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-21-5786-01 5 140558688 140558688 C T PCDHB8 Missense_Mutation p.P358L 0.06 deleterious_low_confidence(0.03) benign(0.068) TCGA-21-5786-01 5 140564015 140564015 C A PCDHB16 Silent p.A627A 0.41 TCGA-21-5786-01 5 140572824 140572824 G T PCDHB10 Missense_Mutation p.L233F 0.54 deleterious_low_confidence(0) possibly_damaging(0.739) TCGA-21-5786-01 5 140712227 140712227 C T PCDHGA1 Missense_Mutation p.T659M 0.70 deleterious_low_confidence(0.01) possibly_damaging(0.805) TCGA-21-5786-01 5 14489014 14489014 G C TRIO Intron 0.54 TCGA-21-5786-01 5 149624820 149624820 C A CAMK2A Intron 0.50 TCGA-21-5786-01 5 156890327 156890327 G C NIPAL4 Missense_Mutation p.G150A 0.62 deleterious(0.01) probably_damaging(1) TCGA-21-5786-01 5 168175347 168175347 G T SLIT3 Missense_Mutation p.R744S 0.56 tolerated(0.16) benign(0.053) TCGA-21-5786-01 5 175815445 175815445 C T NOP16 Silent p.P32P 0.65 TCGA-21-5786-01 5 176936823 176936823 C A DOK3 Missense_Mutation p.A11S 0.43 deleterious_low_confidence(0) benign(0.15) TCGA-21-5786-01 5 19520841 19520841 C A CDH18 Silent p.L479L 0.25 TCGA-21-5786-01 5 21752000 21752000 C T CDH12 Missense_Mutation p.S744N 0.49 tolerated(1) benign(0.007) TCGA-21-5786-01 5 32780908 32780908 G T NPR3 Missense_Mutation p.A426S 0.42 tolerated(0.53) benign(0.015) TCGA-21-5786-01 5 33576326 33576326 G T ADAMTS12 Missense_Mutation p.L1269M 0.21 tolerated(0.35) benign(0.008) TCGA-21-5786-01 5 33576327 33576327 G T ADAMTS12 Missense_Mutation p.H1268Q 0.21 tolerated(0.65) benign(0.001) TCGA-21-5786-01 5 34814735 34814735 G T RAI14 Silent p.S303S 0.26 TCGA-21-5786-01 5 40981700 40981700 G T C7 3'UTR 0.23 TCGA-21-5786-01 5 42718921 42718921 G A GHR Missense_Mutation p.D438N 0.28 tolerated(0.38) benign(0.033) TCGA-21-5786-01 5 44809059 44809059 G T MRPS30 5'UTR 0.31 TCGA-21-5786-01 5 45267203 45267203 G T HCN1 Missense_Mutation p.L591I 0.29 deleterious(0) probably_damaging(0.981) TCGA-21-5786-01 5 50125732 50125732 G T PARP8 Missense_Mutation p.G724C 0.55 deleterious(0.02) probably_damaging(1) TCGA-21-5786-01 5 5303769 5303769 C T ADAMTS16 Missense_Mutation p.P1026S 0.29 tolerated(0.1) possibly_damaging(0.517) TCGA-21-5786-01 5 5489359 5489359 G T KIAA0947 Silent p.R2239R 0.34 TCGA-21-5786-01 5 66255124 66255124 T G MAST4 Intron 0.48 TCGA-21-5786-01 5 66461843 66461843 G A MAST4 Missense_Mutation p.R2279K 0.68 benign(0.001) TCGA-21-5786-01 5 66461844 66461844 G T MAST4 Missense_Mutation p.R2279S 0.67 benign(0.003) TCGA-21-5786-01 5 98235274 98235274 C G CHD1 Missense_Mutation p.W332S 0.45 deleterious(0) probably_damaging(1) TCGA-21-5786-01 6 108227913 108227913 G C SEC63 Missense_Mutation p.P268A 0.53 tolerated(0.14) possibly_damaging(0.771) TCGA-21-5786-01 6 111694287 111694287 T A REV3L Silent p.S1757S 0.05 TCGA-21-5786-01 6 128400010 128400010 T A PTPRK Missense_Mutation p.T611S 0.15 tolerated(0.59) possibly_damaging(0.848) TCGA-21-5786-01 6 129932709 129932709 A C ARHGAP18 Nonsense_Mutation p.L364* 0.17 TCGA-21-5786-01 6 132014758 132014758 C T ENPP3 Missense_Mutation p.A469V 0.51 tolerated(0.32) benign(0.262) TCGA-21-5786-01 6 139610030 139610030 C A TXLNB Missense_Mutation p.A3S 0.62 tolerated_low_confidence(0.29) benign(0.001) TCGA-21-5786-01 6 146248399 146248399 C T SHPRH Missense_Mutation p.A1043T 0.59 deleterious(0) probably_damaging(1) TCGA-21-5786-01 6 152720802 152720802 A G SYNE1 Missense_Mutation p.C2396R 0.08 possibly_damaging(0.643) TCGA-21-5786-01 6 152720890 152720890 C A SYNE1 Missense_Mutation p.L2366F 0.53 probably_damaging(0.997) TCGA-21-5786-01 6 160978499 160978499 C T LPA Missense_Mutation p.C1579Y 0.11 deleterious(0) probably_damaging(0.998) TCGA-21-5786-01 6 24146060 24146060 C T NRSN1 Silent p.I158I 0.24 TCGA-21-5786-01 6 27776237 27776237 C A HIST1H2AI Missense_Mutation p.L84I 0.08 tolerated_low_confidence(0.26) possibly_damaging(0.899) TCGA-21-5786-01 6 27925264 27925264 A T OR2B6 Silent p.L82L 0.22 TCGA-21-5786-01 6 30633402 30633402 C G DHX16 Missense_Mutation p.D259H 0.44 deleterious(0.03) unknown(0) TCGA-21-5786-01 6 30645043 30645043 T C PPP1R18 3'UTR 0.33 TCGA-21-5786-01 6 30892295 30892295 C A VARS2 Silent p.A907A 0.14 TCGA-21-5786-01 6 36260856 36260856 T A PNPLA1 Missense_Mutation p.F153I 0.42 deleterious(0) probably_damaging(0.999) TCGA-21-5786-01 6 38840381 38840381 G T DNAH8 Missense_Mutation p.V2137F 0.25 probably_damaging(0.979) TCGA-21-5786-01 6 42141454 42141454 A C GUCA1A Missense_Mutation p.T35P 0.47 deleterious(0.03) probably_damaging(0.999) TCGA-21-5786-01 6 42141463 42141463 G T GUCA1A Nonsense_Mutation p.E38* 0.45 TCGA-21-5786-01 6 44271932 44271932 C A AARS2 Missense_Mutation p.D665Y 0.44 deleterious(0) probably_damaging(0.99) TCGA-21-5786-01 6 46658453 46658453 A G TDRD6 Missense_Mutation p.K863R 0.34 tolerated(0.1) benign(0.141) TCGA-21-5786-01 6 49660607 49660607 C A CRISP2 Missense_Mutation p.S204I 0.39 deleterious(0.01) possibly_damaging(0.681) TCGA-21-5786-01 6 53517037 53517037 A T KLHL31 Missense_Mutation p.Y422N 0.41 deleterious(0) probably_damaging(0.925) TCGA-21-5786-01 6 54214629 54214629 C G TINAG Missense_Mutation p.P339A 0.54 deleterious(0) probably_damaging(1) TCGA-21-5786-01 6 69949024 69949024 G C BAI3 Missense_Mutation p.R907P 0.47 deleterious(0.04) possibly_damaging(0.722) TCGA-21-5786-01 7 1026301 1026301 G A CYP2W1 Silent p.L229L 0.70 TCGA-21-5786-01 7 103417016 103417016 A T RELN Missense_Mutation p.C178S 0.46 deleterious(0) benign(0.011) TCGA-21-5786-01 7 105621509 105621509 C A CDHR3 Missense_Mutation p.D115E 0.59 deleterious(0.01) probably_damaging(0.996) TCGA-21-5786-01 7 105893566 105893566 G C NAMPT Missense_Mutation p.P421R 0.17 tolerated(0.18) benign(0.031) TCGA-21-5786-01 7 107398612 107398612 T G CBLL1 Missense_Mutation p.I155M 0.52 deleterious(0) probably_damaging(0.996) TCGA-21-5786-01 7 117450849 117450849 C T CTTNBP2 Silent p.Q128Q 0.06 TCGA-21-5786-01 7 122338528 122338528 C T RNF133 Missense_Mutation p.D149N 0.53 tolerated(0.45) possibly_damaging(0.641) TCGA-21-5786-01 7 126883323 126883323 C A GRM8 5'UTR 0.48 TCGA-21-5786-01 7 142989494 142989494 C T CASP2 Silent p.T109T 0.11 TCGA-21-5786-01 7 143141054 143141054 A G TAS2R60 Missense_Mutation p.Y170C 0.04 deleterious(0.01) probably_damaging(0.923) TCGA-21-5786-01 7 150656848 150656848 C T KCNH2 Intron 0.41 TCGA-21-5786-01 7 151860104 151860104 G A KMT2C Missense_Mutation p.P3520S 0.06 benign(0.008) TCGA-21-5786-01 7 155295777 155295777 G T CNPY1 Missense_Mutation p.H89N 0.64 deleterious(0.02) benign(0.054) TCGA-21-5786-01 7 158445095 158445095 C A NCAPG2 Missense_Mutation p.D942Y 0.07 deleterious(0.03) benign(0.015) TCGA-21-5786-01 7 27182915 27182915 G A HOXA5 Silent p.S104S 0.43 TCGA-21-5786-01 7 43483903 43483903 G - HECW1 Frame_Shift_Del p.E379Nfs*32 0.36 TCGA-21-5786-01 7 83034833 83034833 C A SEMA3E Missense_Mutation p.D311Y 0.31 deleterious(0) probably_damaging(1) TCGA-21-5786-01 7 99227148 99227148 T G ZSCAN25 Missense_Mutation p.C380W 0.53 deleterious(0) probably_damaging(0.993) TCGA-21-5786-01 8 106810992 106810992 G T ZFPM2 Silent p.R260R 0.24 TCGA-21-5786-01 8 107691444 107691444 G T OXR1 Missense_Mutation p.G77V 0.31 deleterious(0) probably_damaging(1) TCGA-21-5786-01 8 11301903 11301903 G C FAM167A Missense_Mutation p.I6M 0.48 tolerated(0.18) possibly_damaging(0.713) TCGA-21-5786-01 8 113420551 113420551 G T CSMD3 Nonsense_Mutation p.Y1867* 0.38 TCGA-21-5786-01 8 114111122 114111122 C A CSMD3 Missense_Mutation p.E260D 0.40 tolerated(0.19) benign(0.02) TCGA-21-5786-01 8 117954971 117954971 G A AARD 3'UTR 0.31 TCGA-21-5786-01 8 119122650 119122650 G A EXT1 Silent p.G212G 0.48 TCGA-21-5786-01 8 120940741 120940741 A T DEPTOR Missense_Mutation p.E75V 0.48 tolerated(0.06) benign(0.424) TCGA-21-5786-01 8 124693325 124693326 - A ANXA13 3'UTR 0.39 TCGA-21-5786-01 8 13072243 13072243 G T DLC1 Intron 0.44 TCGA-21-5786-01 8 135614255 135614255 G A ZFAT Silent p.S569S 0.47 TCGA-21-5786-01 8 141583033 141583033 T A AGO2 Splice_Site p.X72_splice 0.31 TCGA-21-5786-01 8 14412337 14412337 C T SGCZ Silent p.K46K 0.05 TCGA-21-5786-01 8 145112765 145112765 G A OPLAH Missense_Mutation p.R384C 0.32 deleterious(0) probably_damaging(0.997) TCGA-21-5786-01 8 22165558 22165558 G T PIWIL2 Missense_Mutation p.G553V 0.36 deleterious(0) possibly_damaging(0.494) TCGA-21-5786-01 8 29927179 29927179 C A TMEM66 Missense_Mutation p.G227C 0.50 deleterious(0) probably_damaging(1) TCGA-21-5786-01 8 3200838 3200838 T A CSMD1 Missense_Mutation p.Q1203H 0.60 possibly_damaging(0.473) TCGA-21-5786-01 8 35579873 35579873 A T UNC5D Silent p.T421T 0.53 TCGA-21-5786-01 8 48706936 48706936 T C PRKDC Missense_Mutation p.I3528V 0.26 benign(0.018) TCGA-21-5786-01 8 56015839 56015839 T A XKR4 Missense_Mutation p.L264H 0.27 deleterious(0) probably_damaging(0.979) TCGA-21-5786-01 8 59059317 59059317 G C FAM110B Missense_Mutation p.E176D 0.25 tolerated(0.58) benign(0) TCGA-21-5786-01 8 61484660 61484660 G T RAB2A Missense_Mutation p.Q58H 0.31 deleterious(0.02) possibly_damaging(0.604) TCGA-21-5786-01 8 67086974 67086974 T C TRIM55 3'UTR 0.62 TCGA-21-5786-01 8 67579091 67579091 C A VCPIP1 Missense_Mutation p.G35W 0.40 deleterious_low_confidence(0.01) probably_damaging(0.965) TCGA-21-5786-01 8 69104662 69104662 T A PREX2 Silent p.A1502A 0.22 TCGA-21-5786-01 8 70744523 70744523 C A SLCO5A1 Missense_Mutation p.C129F 0.23 tolerated(0.09) benign(0.02) TCGA-21-5786-01 8 73849404 73849404 G T KCNB2 Missense_Mutation p.S605I 0.25 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-21-5786-01 8 99961377 99961377 G C OSR2 Missense_Mutation p.R66P 0.41 deleterious_low_confidence(0.02) benign(0.006) TCGA-21-5786-01 9 111899836 111899836 C A FRRS1L Missense_Mutation p.D312Y 0.60 deleterious(0) probably_damaging(0.981) TCGA-21-5786-01 9 121976078 121976078 G T BRINP1 Intron 0.55 TCGA-21-5786-01 9 19096745 19096745 G A HAUS6 Missense_Mutation p.R51C 0.64 deleterious(0) probably_damaging(0.939) TCGA-21-5786-01 9 21974768 21974768 G T CDKN2A Missense_Mutation p.A20E 0.55 deleterious(0) probably_damaging(0.939) TCGA-21-5786-01 9 27949549 27949549 T A LINGO2 Missense_Mutation p.Q374L 0.57 tolerated(0.14) benign(0) TCGA-21-5786-01 9 34647934 34647934 G T GALT Silent p.L161L 0.49 TCGA-21-5786-01 9 98215785 98215785 C T PTCH1 Missense_Mutation p.G1142R 0.57 deleterious(0.01) probably_damaging(0.996) TCGA-21-5786-01 9 98278916 98278916 G T RP11-435O5.4 3'Flank 0.52 TCGA-21-5786-01 X 100509889 100509889 C T DRP2 Missense_Mutation p.S719F 0.70 deleterious(0) possibly_damaging(0.714) TCGA-21-5786-01 X 118221161 118221161 T C KIAA1210 Silent p.P1344P 0.77 TCGA-21-5786-01 X 134993741 134993741 C A SAGE1 Missense_Mutation p.A717D 0.75 deleterious(0) probably_damaging(0.977) TCGA-21-5786-01 X 135428121 135428121 T A GPR112 Silent p.P752P 0.60 TCGA-21-5786-01 X 139038632 139038632 G C CXorf66 Nonsense_Mutation p.S170* 0.72 TCGA-21-5786-01 X 1505504 1505504 C G SLC25A6 Missense_Mutation p.K296N 0.41 tolerated(0.08) benign(0.045) TCGA-21-5786-01 X 153171711 153171711 C A AVPR2 Missense_Mutation p.R251S 0.77 tolerated(0.77) benign(0.018) TCGA-21-5786-01 X 155239643 155239643 C G IL9R Missense_Mutation p.P379A 0.28 tolerated(0.26) benign(0.011) TCGA-21-5786-01 X 19389643 19389643 G T MAP3K15 Silent p.S1038S 0.85 TCGA-21-5786-01 X 21670695 21670695 A T CNKSR2 3'UTR 0.79 TCGA-21-5786-01 X 26157961 26157961 T A MAGEB18 Missense_Mutation p.F287I 0.61 deleterious(0) probably_damaging(0.978) TCGA-21-5786-01 X 26212377 26212377 T A MAGEB6 Silent p.T138T 0.82 TCGA-21-5786-01 X 34148160 34148160 T A FAM47A Nonsense_Mutation p.K746* 0.75 TCGA-21-5786-01 X 70148090 70148090 G A SLC7A3 Missense_Mutation p.S242F 0.70 tolerated(0.11) benign(0.41) TCGA-21-5786-01 X 78619025 78619025 T C ITM2A Silent p.K46K 0.64 TCGA-21-5786-01 X 89177512 89177512 C A TGIF2LX Missense_Mutation p.P143Q 0.70 tolerated(0.66) benign(0.32) TCGA-21-5786-01 X 91134039 91134039 G T PCDH11X Missense_Mutation p.D934Y 0.82 deleterious(0) probably_damaging(1) TCGA-21-5786-01 Y 6938804 6938804 A T TBL1Y Missense_Mutation p.S212C 0.75 deleterious(0.03) possibly_damaging(0.806) TCGA-21-5787-01 10 101148047 101148047 C A CNNM1 Missense_Mutation p.P888H 0.17 tolerated_low_confidence(0.06) benign(0.219) TCGA-21-5787-01 10 102749641 102749641 G T C10orf2 Missense_Mutation p.R495M 0.12 deleterious(0) possibly_damaging(0.583) TCGA-21-5787-01 10 102822321 102822321 C T KAZALD1 5'UTR 0.33 TCGA-21-5787-01 10 106075072 106075072 G A ITPRIP Silent p.V246V 0.47 TCGA-21-5787-01 10 118196264 118196264 G C PNLIPRP3 Missense_Mutation p.G31R 0.14 deleterious(0.03) benign(0.068) TCGA-21-5787-01 10 119014834 119014834 G T SLC18A2 Silent p.T249T 0.07 TCGA-21-5787-01 10 119044594 119044594 G A PDZD8 Silent p.H550H 0.47 TCGA-21-5787-01 10 121692597 121692597 C T SEC23IP Nonsense_Mutation p.R947* 0.51 TCGA-21-5787-01 10 12191907 12191907 T A SEC61A2 Missense_Mutation p.Y137N 0.15 deleterious(0) probably_damaging(1) TCGA-21-5787-01 10 123985957 123985957 C T TACC2 Missense_Mutation p.S2562F 0.15 benign(0.078) TCGA-21-5787-01 10 128193390 128193390 C A C10orf90 Nonsense_Mutation p.E127* 0.43 TCGA-21-5787-01 10 13378352 13378352 T - SEPHS1 Splice_Site p.X100_splice 0.34 TCGA-21-5787-01 10 134598853 134598853 G T NKX6-2 Silent p.T170T 0.31 TCGA-21-5787-01 10 18276476 18276477 CT A SLC39A12 Frame_Shift_Del p.L389Ifs*60 0.32 TCGA-21-5787-01 10 18825123 18825123 C A CACNB2 Missense_Mutation p.P434T 0.45 deleterious(0.01) benign(0.357) TCGA-21-5787-01 10 22880610 22880610 A G PIP4K2A Missense_Mutation p.I147T 0.11 deleterious(0.03) benign(0.248) TCGA-21-5787-01 10 29813479 29813479 C A SVIL Silent p.R836R 0.15 TCGA-21-5787-01 10 33103303 33103303 G A C10ORF68 Missense_Mutation p.D306N 0.42 tolerated(0.09) benign(0.009) TCGA-21-5787-01 10 33103304 33103304 A T C10ORF68 Missense_Mutation p.D306V 0.42 deleterious(0) benign(0.095) TCGA-21-5787-01 10 37442556 37442556 A G ANKRD30A Silent p.Q532Q 0.04 TCGA-21-5787-01 10 43678762 43678762 A T CSGALNACT2 Missense_Mutation p.L467F 0.45 tolerated(0.07) benign(0.211) TCGA-21-5787-01 10 48370751 48370751 G T ZNF488 Missense_Mutation p.E73D 0.14 tolerated(0.09) benign(0.005) TCGA-21-5787-01 10 48390116 48390116 C T RBP3 Silent p.V254V 0.32 TCGA-21-5787-01 10 49618206 49618206 C T MAPK8 Missense_Mutation p.H149Y 0.09 deleterious(0) probably_damaging(0.998) TCGA-21-5787-01 10 50121428 50121428 C A LRRC18 Intron 0.47 TCGA-21-5787-01 10 50854662 50854662 T A CHAT Missense_Mutation p.L408H 0.43 deleterious(0) probably_damaging(1) TCGA-21-5787-01 10 54530518 54530518 G T MBL2 Silent p.P72P 0.13 TCGA-21-5787-01 10 62029914 62029914 C A ANK3 Missense_Mutation p.G163V 0.44 possibly_damaging(0.758) TCGA-21-5787-01 10 68040337 68040337 G T CTNNA3 Missense_Mutation p.A592D 0.08 tolerated(0.05) unknown(0) TCGA-21-5787-01 10 72026002 72026002 C A NPFFR1 Silent p.A51A 0.14 TCGA-21-5787-01 10 75549948 75549948 C G ZSWIM8 Nonsense_Mutation p.S280* 0.14 TCGA-21-5787-01 10 75551984 75551984 C G ZSWIM8 Missense_Mutation p.P563A 0.16 tolerated_low_confidence(0.78) benign(0.051) TCGA-21-5787-01 10 90572892 90572892 G A LIPM Missense_Mutation p.G102R 0.41 deleterious(0.03) probably_damaging(0.962) TCGA-21-5787-01 10 96745850 96745850 C A CYP2C9 Missense_Mutation p.P404T 0.40 deleterious(0) probably_damaging(0.999) TCGA-21-5787-01 10 98761031 98761031 G A SLIT1 Silent p.R1481R 0.16 TCGA-21-5787-01 11 10527417 10527417 G T AMPD3 Missense_Mutation p.A773S 0.46 tolerated(0.5) benign(0.004) TCGA-21-5787-01 11 106558379 106558379 C A GUCY1A2 Missense_Mutation p.V730L 0.43 tolerated(0.53) benign(0.003) TCGA-21-5787-01 11 1097290 1097290 G T MUC2 Missense_Mutation p.V2236F 0.42 unknown(0) TCGA-21-5787-01 11 116691973 116691973 C G APOA4 Silent p.L267L 0.36 TCGA-21-5787-01 11 123597134 123597134 T C ZNF202 Silent p.E506E 0.23 TCGA-21-5787-01 11 1265969 1265969 C A MUC5B Missense_Mutation p.P2620H 0.45 unknown(0) TCGA-21-5787-01 11 128781668 128781668 T C KCNJ5 Missense_Mutation p.L167P 0.24 deleterious(0) probably_damaging(0.931) TCGA-21-5787-01 11 132307179 132307179 C G OPCML Missense_Mutation p.E201Q 0.67 deleterious(0) probably_damaging(0.994) TCGA-21-5787-01 11 22297660 22297660 C T ANO5 Missense_Mutation p.P812L 0.28 deleterious(0) probably_damaging(1) TCGA-21-5787-01 11 26682043 26682043 G T ANO3 3'UTR 0.34 TCGA-21-5787-01 11 31086643 31086643 T C DCDC1 Missense_Mutation p.T786A 0.10 tolerated(0.13) benign(0.133) TCGA-21-5787-01 11 36669697 36669697 A T C11orf74 Missense_Mutation p.T164S 0.48 tolerated(0.6) benign(0.012) TCGA-21-5787-01 11 43333616 43333616 G A API5 5'UTR 0.19 TCGA-21-5787-01 11 46399764 46399764 G T DGKZ Missense_Mutation p.A975S 0.20 tolerated(0.62) benign(0.004) TCGA-21-5787-01 11 48285559 48285559 C A OR4X1 Silent p.A49A 0.13 TCGA-21-5787-01 11 4967860 4967860 C T OR51A4 Silent p.L157L 0.24 TCGA-21-5787-01 11 4976473 4976473 C T OR51A2 Silent p.L157L 0.17 TCGA-21-5787-01 11 5013285 5013285 T A MMP26 Silent p.T229T 0.31 TCGA-21-5787-01 11 55110725 55110726 - A OR4A16 Frame_Shift_Ins p.D18Rfs*3 0.38 TCGA-21-5787-01 11 55340018 55340018 T C OR4C16 Missense_Mutation p.C139R 0.24 deleterious(0) probably_damaging(0.988) TCGA-21-5787-01 11 55872966 55872966 G T OR8H2 Missense_Mutation p.V150L 0.47 tolerated(0.4) benign(0.006) TCGA-21-5787-01 11 57947063 57947063 C A OR9Q1 Silent p.I49I 0.23 TCGA-21-5787-01 11 57958292 57958292 C A OR9Q2 Silent p.I110I 0.41 TCGA-21-5787-01 11 57995641 57995641 G A OR10Q1 Missense_Mutation p.A236V 0.42 deleterious(0.04) benign(0.169) TCGA-21-5787-01 11 57995753 57995753 C A OR10Q1 Missense_Mutation p.V199L 0.41 tolerated(0.27) benign(0.131) TCGA-21-5787-01 11 58170746 58170746 A C OR5B3 Missense_Mutation p.L46W 0.50 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-21-5787-01 11 61488164 61488165 - C DAGLA Frame_Shift_Ins p.V38Rfs*9 0.33 TCGA-21-5787-01 11 6245432 6245432 C G FAM160A2 Missense_Mutation p.G62A 0.33 tolerated(0.62) benign(0.028) TCGA-21-5787-01 11 62622122 62622122 T A SLC3A2 5'Flank 0.49 TCGA-21-5787-01 11 63137701 63137701 C G SLC22A9 Missense_Mutation p.T58S 0.50 deleterious(0.02) possibly_damaging(0.539) TCGA-21-5787-01 11 6898584 6898584 C T OR10A4 Missense_Mutation p.H236Y 0.40 tolerated(0.28) benign(0.261) TCGA-21-5787-01 11 7081200 7081200 G T NLRP14 Silent p.T903T 0.20 TCGA-21-5787-01 11 71259993 71259993 G T KRTAP5-9 Missense_Mutation p.C97F 0.48 deleterious_low_confidence(0) unknown(0) TCGA-21-5787-01 11 7981634 7981634 C A NLRP10 Nonsense_Mutation p.E509* 0.40 TCGA-21-5787-01 11 84027995 84027995 C A DLG2 Intron 0.35 TCGA-21-5787-01 11 85396052 85396052 T A CCDC89 Silent p.P374P 0.34 TCGA-21-5787-01 11 86519020 86519020 G T PRSS23 Missense_Mutation p.G112V 0.53 tolerated(0.33) benign(0.004) TCGA-21-5787-01 11 88780463 88780463 G A GRM5 Missense_Mutation p.P193L 0.47 deleterious(0) probably_damaging(1) TCGA-21-5787-01 11 93471590 93471611 GGGGTTTCTTTTCTCCCCTTTA - TAF1D Frame_Shift_Del p.K42Ffs*27 0.31 TCGA-21-5787-01 12 10223770 10223770 G C CLEC1A 3'UTR 0.36 TCGA-21-5787-01 12 102589749 102589749 G T PARPBP Nonsense_Mutation p.G474* 0.44 TCGA-21-5787-01 12 104327872 104327872 G C HSP90B1 Missense_Mutation p.D184H 0.06 tolerated(0.06) possibly_damaging(0.667) TCGA-21-5787-01 12 109520495 109520495 G T USP30 Nonsense_Mutation p.E299* 0.33 TCGA-21-5787-01 12 113612734 113612734 C A DDX54 Silent p.T294T 0.58 TCGA-21-5787-01 12 132335647 132335647 G T MMP17 Missense_Mutation p.G547V 0.60 tolerated(0.06) benign(0.141) TCGA-21-5787-01 12 21693479 21693479 A T GYS2 Silent p.R558R 0.59 TCGA-21-5787-01 12 21699353 21699353 C G GYS2 Missense_Mutation p.D492H 0.31 deleterious(0.02) benign(0.134) TCGA-21-5787-01 12 31944664 31944664 C A H3F3C 3'UTR 0.62 TCGA-21-5787-01 12 32481359 32481359 G T BICD1 Missense_Mutation p.R657L 0.59 tolerated(0.47) probably_damaging(0.993) TCGA-21-5787-01 12 50642452 50642452 T C LIMA1 Missense_Mutation p.K28R 0.58 tolerated(0.42) benign(0.103) TCGA-21-5787-01 12 51089048 51089048 A C DIP2B Splice_Site p.X574_splice 0.62 TCGA-21-5787-01 12 5154550 5154550 C A KCNA5 Missense_Mutation p.L413I 0.39 deleterious(0) probably_damaging(0.999) TCGA-21-5787-01 12 55688865 55688865 G T OR6C6 Missense_Mutation p.P51H 0.47 tolerated_low_confidence(0.23) benign(0.013) TCGA-21-5787-01 12 57563000 57563000 G T LRP1 Missense_Mutation p.G1025W 0.50 probably_damaging(1) TCGA-21-5787-01 12 57573861 57573861 A T LRP1 Missense_Mutation p.S1725C 0.57 possibly_damaging(0.847) TCGA-21-5787-01 12 6184682 6184682 G A VWF Silent p.T231T 0.65 TCGA-21-5787-01 12 66620557 66620557 G A IRAK3 Silent p.K236K 0.56 TCGA-21-5787-01 12 66788127 66788127 G T GRIP1 Missense_Mutation p.Q612K 0.60 tolerated(0.15) possibly_damaging(0.572) TCGA-21-5787-01 12 70732322 70732322 G T CNOT2 Missense_Mutation p.G334W 0.46 deleterious(0) probably_damaging(1) TCGA-21-5787-01 12 7639250 7639250 G C CD163 Missense_Mutation p.A768G 0.49 deleterious(0) possibly_damaging(0.882) TCGA-21-5787-01 12 7805255 7805255 C G APOBEC1 Missense_Mutation p.R74T 0.37 tolerated(0.06) possibly_damaging(0.593) TCGA-21-5787-01 12 83289921 83289921 G T TMTC2 Missense_Mutation p.G327C 0.55 tolerated(0.14) benign(0.005) TCGA-21-5787-01 12 86272314 86272314 A C NTS Missense_Mutation p.K109N 0.65 tolerated(0.22) benign(0.046) TCGA-21-5787-01 12 90020239 90020239 C A ATP2B1 Missense_Mutation p.G374V 0.52 deleterious(0) probably_damaging(1) TCGA-21-5787-01 12 95397373 95397373 G A NDUFA12 Silent p.F28F 0.13 TCGA-21-5787-01 12 96617398 96617398 G A ELK3 Silent p.Q18Q 0.50 TCGA-21-5787-01 13 100518518 100518518 T A CLYBL Missense_Mutation p.L220Q 0.35 tolerated(0.58) benign(0.004) TCGA-21-5787-01 13 100543577 100543577 C A CLYBL Silent p.A311A 0.06 TCGA-21-5787-01 13 32914784 32914784 T A BRCA2 Missense_Mutation p.S2098T 0.34 tolerated(0.3) possibly_damaging(0.828) TCGA-21-5787-01 13 58208879 58208879 G A PCDH17 Silent p.E733E 0.30 TCGA-21-5787-01 13 70535578 70535578 T C KLHL1 Splice_Site p.X227_splice 0.10 TCGA-21-5787-01 13 70681819 70681819 C A KLHL1 Missense_Mutation p.G5W 0.21 deleterious_low_confidence(0) possibly_damaging(0.51) TCGA-21-5787-01 14 20483023 20483023 C A OR4K14 Silent p.G110G 0.26 TCGA-21-5787-01 14 22038649 22038649 G T OR10G3 Missense_Mutation p.S76Y 0.27 deleterious(0) possibly_damaging(0.738) TCGA-21-5787-01 14 31856449 31856449 A G HEATR5A Missense_Mutation p.C63R 0.10 tolerated(0.14) possibly_damaging(0.642) TCGA-21-5787-01 14 32034246 32034246 A T NUBPL Missense_Mutation p.N95Y 0.32 deleterious(0.01) possibly_damaging(0.707) TCGA-21-5787-01 14 51210134 51210134 C A NIN Missense_Mutation p.K1767N 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-21-5787-01 14 51446134 51446134 G T TRIM9 Missense_Mutation p.P681T 0.34 deleterious(0) probably_damaging(1) TCGA-21-5787-01 14 52907324 52907324 T G TXNDC16 Missense_Mutation p.K654T 0.30 deleterious(0.03) benign(0.145) TCGA-21-5787-01 14 53178142 53178142 A G PSMC6 Missense_Mutation p.E128G 0.23 deleterious(0.01) possibly_damaging(0.905) TCGA-21-5787-01 14 65249149 65249149 G A SPTB Silent p.L1375L 0.22 TCGA-21-5787-01 14 70480177 70480177 A - SMOC1 Frame_Shift_Del p.I339Lfs*25 0.25 TCGA-21-5787-01 14 71514572 71514572 C T PCNX Silent p.S1403S 0.18 TCGA-21-5787-01 14 75019063 75019063 C T LTBP2 Missense_Mutation p.R409H 0.18 deleterious(0.03) benign(0.04) TCGA-21-5787-01 14 77706943 77706943 G T TMEM63C Missense_Mutation p.M352I 0.46 tolerated(0.1) possibly_damaging(0.794) TCGA-21-5787-01 14 77844701 77844701 G A SAMD15 Missense_Mutation p.D314N 0.27 tolerated(0.08) possibly_damaging(0.501) TCGA-21-5787-01 14 90650582 90650582 C A KCNK13 Silent p.A154A 0.39 TCGA-21-5787-01 14 92909799 92909799 C A SLC24A4 Missense_Mutation p.S213Y 0.37 deleterious(0) probably_damaging(0.998) TCGA-21-5787-01 14 94053224 94053224 C A UNC79 Missense_Mutation p.A824D 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-21-5787-01 14 99879360 99879360 G A SETD3 Silent p.P259P 0.13 TCGA-21-5787-01 15 33855210 33855210 A C RYR3 Missense_Mutation p.K382T 0.21 possibly_damaging(0.486) TCGA-21-5787-01 15 33938613 33938613 T A RYR3 Missense_Mutation p.F1276Y 0.29 benign(0.004) TCGA-21-5787-01 15 36989588 36989588 C A C15orf41 Missense_Mutation p.L181I 0.22 tolerated(0.51) benign(0.005) TCGA-21-5787-01 15 40477472 40477472 G A BUB1B Silent p.E286E 0.22 TCGA-21-5787-01 15 42168377 42168377 T C SPTBN5 Missense_Mutation p.K1353E 0.38 benign(0.311) TCGA-21-5787-01 15 43527824 43527824 C A TGM5 Missense_Mutation p.M519I 0.23 tolerated(0.51) benign(0.438) TCGA-21-5787-01 15 48533761 48533761 C A SLC12A1 Missense_Mutation p.T422N 0.21 deleterious(0) possibly_damaging(0.565) TCGA-21-5787-01 15 51975481 51975481 G A SCG3 Missense_Mutation p.E83K 0.28 deleterious_low_confidence(0.03) benign(0.414) TCGA-21-5787-01 15 57731420 57731420 G A CGNL1 Missense_Mutation p.S408N 0.11 tolerated(0.17) benign(0.077) TCGA-21-5787-01 15 65273355 65273355 C A SPG21 Silent p.V24V 0.05 TCGA-21-5787-01 15 68661615 68661615 C A ITGA11 Missense_Mutation p.V58L 0.36 deleterious(0) benign(0.362) TCGA-21-5787-01 15 69320642 69320642 C A NOX5 Missense_Mutation p.L88M 0.49 deleterious(0.04) probably_damaging(0.973) TCGA-21-5787-01 15 80762560 80762560 G T ARNT2 Nonsense_Mutation p.E66* 0.38 TCGA-21-5787-01 15 88799374 88799374 G C NTRK3 Missense_Mutation p.S4C 0.24 tolerated_low_confidence(0.14) possibly_damaging(0.619) TCGA-21-5787-01 15 89744762 89744762 C T ABHD2 3'UTR 0.26 TCGA-21-5787-01 16 20432659 20432659 G T ACSM5 Missense_Mutation p.G235W 0.07 deleterious(0) probably_damaging(1) TCGA-21-5787-01 16 2147352 2147352 G T PKD1 Missense_Mutation p.P3458H 0.19 benign(0.009) TCGA-21-5787-01 16 21968570 21968570 C G UQCRC2 Silent p.L16L 0.15 TCGA-21-5787-01 16 24358077 24358077 G C CACNG3 Missense_Mutation p.K78N 0.37 tolerated(0.31) probably_damaging(0.983) TCGA-21-5787-01 16 2578598 2578598 C T AMDHD2 Silent p.P336P 0.22 TCGA-21-5787-01 16 27078171 27078171 G T C16orf82 RNA 0.18 TCGA-21-5787-01 16 28123164 28123164 G A XPO6 Missense_Mutation p.P772L 0.42 tolerated(0.33) benign(0) TCGA-21-5787-01 16 28511049 28511049 G T IL27 Silent p.R219R 0.20 TCGA-21-5787-01 16 31388586 31388586 G T ITGAX Missense_Mutation p.S930I 0.44 deleterious(0) probably_damaging(0.999) TCGA-21-5787-01 16 31925796 31925796 G T ZNF267 Splice_Site p.X76_splice 0.22 TCGA-21-5787-01 16 32265004 32265004 G A TP53TG3D Nonsense_Mutation p.W110* 0.11 TCGA-21-5787-01 16 32890604 32890604 C A SLC6A10P RNA 0.19 TCGA-21-5787-01 16 47622821 47622821 A T PHKB Silent p.T292T 0.41 TCGA-21-5787-01 16 55523690 55523690 A T MMP2 Silent p.T378T 0.30 TCGA-21-5787-01 16 56926012 56926012 C G SLC12A3 Missense_Mutation p.P796A 0.39 tolerated(0.49) benign(0.003) TCGA-21-5787-01 16 61859003 61859003 C A CDH8 Missense_Mutation p.G250C 0.28 deleterious(0.02) probably_damaging(1) TCGA-21-5787-01 16 66998388 66998388 C A CES3 Missense_Mutation p.A230D 0.17 deleterious(0) probably_damaging(0.961) TCGA-21-5787-01 16 67487556 67487556 G C ATP6V0D1 Missense_Mutation p.L65V 0.22 tolerated(0.08) possibly_damaging(0.654) TCGA-21-5787-01 16 67876852 67876853 - GCAGCA THAP11 In_Frame_Ins p.Q131_Q132dup 0.20 TCGA-21-5787-01 16 68844241 68844241 C T CDH1 Missense_Mutation p.P277S 0.12 deleterious(0.03) probably_damaging(0.994) TCGA-21-5787-01 16 70170101 70170101 T A PDPR Silent p.P334P 0.22 TCGA-21-5787-01 16 75665710 75665710 C G KARS Missense_Mutation p.R348P 0.19 deleterious(0) probably_damaging(0.998) TCGA-21-5787-01 16 77375636 77375636 G C ADAMTS18 Missense_Mutation p.P559A 0.22 deleterious(0) probably_damaging(0.94) TCGA-21-5787-01 16 77850859 77850859 T C VAT1L Missense_Mutation p.I92T 0.33 tolerated(0.11) probably_damaging(0.971) TCGA-21-5787-01 17 10323421 10323421 C A MYH8 Missense_Mutation p.V42L 0.04 deleterious(0.02) benign(0.419) TCGA-21-5787-01 17 18416560 18416560 C T USP32P2 RNA 0.42 TCGA-21-5787-01 17 21204287 21204287 C G MAP2K3 Nonsense_Mutation p.Y127* 0.32 TCGA-21-5787-01 17 26114756 26114756 G T NOS2 Missense_Mutation p.L139I 0.16 tolerated(0.17) benign(0.363) TCGA-21-5787-01 17 26694380 26694380 G T VTN 3'UTR 0.42 TCGA-21-5787-01 17 3030217 3030217 C G OR1G1 Missense_Mutation p.C210S 0.15 tolerated(0.1) benign(0.243) TCGA-21-5787-01 17 30677214 30677214 G T ZNF207 5'UTR 0.43 TCGA-21-5787-01 17 35487034 35487034 G T ACACA Missense_Mutation p.F1930L 0.21 tolerated(0.58) benign(0.002) TCGA-21-5787-01 17 35913322 35913322 G A SYNRG Nonsense_Mutation p.Q835* 0.16 TCGA-21-5787-01 17 46629778 46629778 G T HOXB3 Nonsense_Mutation p.S20* 0.30 TCGA-21-5787-01 17 46805521 46805521 G T HOXB13 Missense_Mutation p.D145E 0.31 deleterious(0.04) probably_damaging(0.997) TCGA-21-5787-01 17 51902243 51902243 A G KIF2B Missense_Mutation p.S617G 0.40 tolerated(0.39) benign(0.003) TCGA-21-5787-01 17 641263 641263 C G FAM57A Silent p.L128L 0.20 TCGA-21-5787-01 17 7100162 7100162 C G DLG4 Missense_Mutation p.G376R 0.46 deleterious(0) probably_damaging(1) TCGA-21-5787-01 17 71389744 71389744 C A SDK2 Missense_Mutation p.G1285C 0.15 deleterious(0) probably_damaging(1) TCGA-21-5787-01 17 7578403 7578403 C T TP53 Missense_Mutation p.C176Y 0.43 deleterious(0) probably_damaging(0.995) TCGA-21-5787-01 17 77757695 77757695 G T CBX2 Silent p.V151V 0.32 TCGA-21-5787-01 17 7802420 7802420 G T CHD3 Missense_Mutation p.R807L 0.52 possibly_damaging(0.569) TCGA-21-5787-01 18 13059268 13059268 G A CEP192 Missense_Mutation p.S1482N 0.22 tolerated(0.07) probably_damaging(0.943) TCGA-21-5787-01 18 33271056 33271056 G A GALNT1 Silent p.T353T 0.44 TCGA-21-5787-01 18 50976950 50976950 G C DCC Missense_Mutation p.V1104L 0.48 tolerated(0.05) benign(0.213) TCGA-21-5787-01 18 61071041 61071041 C A VPS4B Missense_Mutation p.R128L 0.23 deleterious(0) benign(0.103) TCGA-21-5787-01 18 67813010 67813010 C T RTTN Silent p.S773S 0.29 TCGA-21-5787-01 18 6978311 6978311 G A LAMA1 Missense_Mutation p.T2025M 0.31 deleterious(0.01) possibly_damaging(0.87) TCGA-21-5787-01 18 71740710 71740710 C A FBXO15 Missense_Mutation p.G507W 0.37 deleterious(0) probably_damaging(1) TCGA-21-5787-01 18 77211765 77211765 G T NFATC1 Missense_Mutation p.G605C 0.30 deleterious(0) probably_damaging(1) TCGA-21-5787-01 19 1008638 1008638 C A GRIN3B Missense_Mutation p.H830N 0.56 deleterious(0) probably_damaging(0.988) TCGA-21-5787-01 19 1207064 1207065 - C STK11 Frame_Shift_Ins p.M51Ifs*112 0.41 TCGA-21-5787-01 19 13049502 13049502 A G CALR Silent p.L3L 0.30 TCGA-21-5787-01 19 14159970 14159970 C T IL27RA Missense_Mutation p.P416S 0.54 deleterious(0) probably_damaging(1) TCGA-21-5787-01 19 15905094 15905094 C G OR10H5 Missense_Mutation p.P79R 0.55 deleterious(0) possibly_damaging(0.474) TCGA-21-5787-01 19 18507777 18507777 A T LRRC25 5'UTR 0.43 TCGA-21-5787-01 19 18679444 18679444 C A KXD1 3'UTR 0.08 TCGA-21-5787-01 19 19737866 19737867 CG - LPAR2 Frame_Shift_Del p.A76Gfs*2 0.37 TCGA-21-5787-01 19 22364156 22364156 G T ZNF676 Silent p.V121V 0.46 TCGA-21-5787-01 19 2834379 2834379 C T ZNF554 Silent p.C382C 0.33 TCGA-21-5787-01 19 30500150 30500150 G T URI1 Missense_Mutation p.D309Y 0.43 deleterious(0.01) possibly_damaging(0.516) TCGA-21-5787-01 19 30935706 30935706 G T ZNF536 Missense_Mutation p.V413L 0.43 tolerated(0.2) benign(0.111) TCGA-21-5787-01 19 35632052 35632052 G T FXYD1 Missense_Mutation p.Q37H 0.24 deleterious(0) possibly_damaging(0.683) TCGA-21-5787-01 19 37660875 37660875 C A ZNF585A 5'UTR 0.38 TCGA-21-5787-01 19 38103481 38103481 A T ZNF540 Missense_Mutation p.T434S 0.24 tolerated(0.07) probably_damaging(0.992) TCGA-21-5787-01 19 38189147 38189147 C A ZNF607 Missense_Mutation p.A629S 0.31 tolerated(1) benign(0) TCGA-21-5787-01 19 40581570 40581570 C T ZNF780A Missense_Mutation p.R261H 0.27 tolerated(0.39) benign(0.02) TCGA-21-5787-01 19 42343368 42343368 G T LYPD4 5'UTR 0.39 TCGA-21-5787-01 19 42485656 42485656 G A ATP1A3 Nonsense_Mutation p.Q492* 0.27 TCGA-21-5787-01 19 44777881 44777881 T A ZNF233 Nonsense_Mutation p.C356* 0.13 TCGA-21-5787-01 19 45422442 45422442 A T APOC1 Silent p.S69S 0.36 TCGA-21-5787-01 19 45567390 45567390 C T CLASRP Silent p.A342A 0.14 TCGA-21-5787-01 19 49422505 49422505 C T NUCB1 Nonsense_Mutation p.Q322* 0.15 TCGA-21-5787-01 19 49962966 49962966 G A ALDH16A1 Nonsense_Mutation p.W120* 0.14 TCGA-21-5787-01 19 50331706 50331706 G C MED25 Missense_Mutation p.K102N 0.11 deleterious(0.03) benign(0.175) TCGA-21-5787-01 19 51140631 51140631 G T SYT3 Missense_Mutation p.A13E 0.23 deleterious(0) possibly_damaging(0.888) TCGA-21-5787-01 19 51874936 51874936 G - NKG7 3'UTR 0.34 TCGA-21-5787-01 19 53770079 53770079 G T VN1R4 Silent p.L280L 0.13 TCGA-21-5787-01 19 55144088 55144088 C A LILRB1 Missense_Mutation p.Q279K 0.51 tolerated(0.07) benign(0.039) TCGA-21-5787-01 19 56042609 56042609 G A SBK2 Silent p.I119I 0.12 TCGA-21-5787-01 19 58017855 58017855 G A ZNF773 Missense_Mutation p.R131K 0.30 tolerated(0.36) benign(0.113) TCGA-21-5787-01 19 58453295 58453295 G T ZNF256 Missense_Mutation p.P294H 0.31 tolerated(0.13) probably_damaging(0.985) TCGA-21-5787-01 19 58549348 58549348 G T ZSCAN1 Silent p.V48V 0.19 TCGA-21-5787-01 19 7997724 7997724 C G TIMM44 Splice_Site p.X288_splice 0.20 TCGA-21-5787-01 19 9000454 9000454 G T MUC16 Silent p.V13510V 0.39 TCGA-21-5787-01 19 9006411 9006411 G A MUC16 Missense_Mutation p.L13203F 0.32 probably_damaging(0.99) TCGA-21-5787-01 19 9065064 9065064 G T MUC16 Missense_Mutation p.T7461N 0.43 unknown(0) TCGA-21-5787-01 19 9325318 9325318 G T OR7D4 Missense_Mutation p.L66M 0.32 deleterious(0) probably_damaging(1) TCGA-21-5787-01 1 101200237 101200237 G T VCAM1 Missense_Mutation p.A658S 0.51 tolerated(0.07) probably_damaging(0.964) TCGA-21-5787-01 1 103343457 103343457 C A COL11A1 3'UTR 0.26 TCGA-21-5787-01 1 110134722 110134722 A G GNAI3 Missense_Mutation p.N311S 0.20 deleterious(0.01) benign(0.442) TCGA-21-5787-01 1 113058889 113058889 T A WNT2B Missense_Mutation p.H177Q 0.22 tolerated(0.22) benign(0.001) TCGA-21-5787-01 1 116280898 116280898 C A CASQ2 Missense_Mutation p.R160L 0.18 deleterious(0.05) possibly_damaging(0.556) TCGA-21-5787-01 1 12557583 12557583 G T VPS13D Missense_Mutation p.R4231L 0.11 probably_damaging(0.969) TCGA-21-5787-01 1 12979805 12979805 C A PRAMEF7 Missense_Mutation p.H333N 0.15 benign(0.007) TCGA-21-5787-01 1 145538010 145538010 G C ITGA10 Missense_Mutation p.E897Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-21-5787-01 1 155920118 155920118 G T ARHGEF2 Missense_Mutation p.S953R 0.45 tolerated_low_confidence(0.06) benign(0.312) TCGA-21-5787-01 1 156947996 156947996 C T ARHGEF11 Silent p.Q170Q 0.62 TCGA-21-5787-01 1 158985664 158985664 A C IFI16 Missense_Mutation p.K90Q 0.44 tolerated(0.13) possibly_damaging(0.798) TCGA-21-5787-01 1 159505223 159505223 G T OR10J5 Missense_Mutation p.T192N 0.62 tolerated(0.32) benign(0.232) TCGA-21-5787-01 1 162335298 162335298 C T RP11-565P22.6 Silent p.H34H 0.54 TCGA-21-5787-01 1 16259730 16259730 G A SPEN Missense_Mutation p.R2332H 0.08 probably_damaging(0.996) TCGA-21-5787-01 1 16332412 16332412 A T C1orf64 Splice_Site p.X28_splice 0.25 TCGA-21-5787-01 1 168208375 168208375 C T SFT2D2 Silent p.S140S 0.44 TCGA-21-5787-01 1 169391178 169391178 G T CCDC181 Missense_Mutation p.P164H 0.54 deleterious(0) probably_damaging(1) TCGA-21-5787-01 1 171292329 171292329 A T FMO4 Nonsense_Mutation p.K107* 0.50 TCGA-21-5787-01 1 17331277 17331277 C A ATP13A2 Silent p.R129R 0.22 TCGA-21-5787-01 1 17594354 17594354 G T PADI3 Missense_Mutation p.M183I 0.22 deleterious(0.02) possibly_damaging(0.838) TCGA-21-5787-01 1 179437784 179437784 C T AXDND1 Intron 0.13 TCGA-21-5787-01 1 179561940 179561940 G T TDRD5 Missense_Mutation p.V64F 0.33 deleterious(0) possibly_damaging(0.84) TCGA-21-5787-01 1 190067840 190067840 A T BRINP3 Missense_Mutation p.L537M 0.20 deleterious(0) possibly_damaging(0.844) TCGA-21-5787-01 1 203472730 203472730 A C OPTC Missense_Mutation p.H294P 0.25 tolerated(0.22) benign(0.014) TCGA-21-5787-01 1 213046038 213046038 G A FLVCR1 Missense_Mutation p.R301Q 0.74 tolerated(0.17) benign(0.001) TCGA-21-5787-01 1 220971262 220971262 C G MARC1 Missense_Mutation p.S220W 0.18 deleterious(0) probably_damaging(1) TCGA-21-5787-01 1 228582761 228582761 C A TRIM11 Missense_Mutation p.R351L 0.66 deleterious(0.01) benign(0.342) TCGA-21-5787-01 1 229613401 229613401 C G NUP133 Missense_Mutation p.D567H 0.65 deleterious(0) probably_damaging(0.99) TCGA-21-5787-01 1 236645688 236645688 G - EDARADD Frame_Shift_Del p.D130Ifs*7 0.34 TCGA-21-5787-01 1 243858999 243858999 C A AKT3 Missense_Mutation p.W22C 0.62 deleterious(0) probably_damaging(1) TCGA-21-5787-01 1 247615256 247615256 C A OR2B11 Missense_Mutation p.G10V 0.39 deleterious(0.02) benign(0.143) TCGA-21-5787-01 1 248570299 248570299 T C OR2T1 Missense_Mutation p.L335P 0.19 deleterious(0) probably_damaging(0.987) TCGA-21-5787-01 1 26448341 26448341 C T PDIK1L Missense_Mutation p.S100L 0.21 deleterious(0.04) possibly_damaging(0.826) TCGA-21-5787-01 1 32210249 32210249 C A BAI2 Missense_Mutation p.G308C 0.39 deleterious(0) probably_damaging(0.997) TCGA-21-5787-01 1 35580552 35580552 G C ZMYM1 Missense_Mutation p.D1041H 0.07 deleterious(0.01) probably_damaging(0.95) TCGA-21-5787-01 1 39877045 39877045 G T KIAA0754 Missense_Mutation p.A234S 0.30 benign(0.005) TCGA-21-5787-01 1 44446880 44446880 G A B4GALT2 Silent p.V45V 0.13 TCGA-21-5787-01 1 44595240 44595240 C T KLF17 Silent p.S99S 0.17 TCGA-21-5787-01 1 46485316 46485316 G A MAST2 Missense_Mutation p.V413M 0.20 deleterious_low_confidence(0.04) possibly_damaging(0.673) TCGA-21-5787-01 1 57159485 57159485 G C PRKAA2 Missense_Mutation p.G175R 0.17 deleterious(0) possibly_damaging(0.773) TCGA-21-5787-01 1 71437256 71437256 T A PTGER3 Intron 0.29 TCGA-21-5787-01 1 74648457 74648457 T A LRRIQ3 Missense_Mutation p.K113M 0.22 deleterious(0) probably_damaging(0.93) TCGA-21-5787-01 1 75038038 75038038 G A C1orf173 Missense_Mutation p.P1119L 0.46 tolerated(0.38) benign(0.004) TCGA-21-5787-01 1 78422308 78422324 GTGGCTGTGCTTGCTGT - FUBP1 Frame_Shift_Del p.Q546Hfs*15 0.52 TCGA-21-5787-01 1 85412758 85412758 C A MCOLN2 Missense_Mutation p.A269S 0.33 deleterious(0.03) benign(0.196) TCGA-21-5787-01 1 85487781 85487781 C A MCOLN3 Missense_Mutation p.W431L 0.15 deleterious(0) probably_damaging(1) TCGA-21-5787-01 1 86306922 86306922 C A COL24A1 Missense_Mutation p.G1204W 0.18 deleterious(0) probably_damaging(1) TCGA-21-5787-01 1 92178020 92178020 C A TGFBR3 Missense_Mutation p.R649M 0.22 tolerated(0.29) benign(0.011) TCGA-21-5787-01 1 94342030 94342030 T A DNTTIP2 Silent p.A487A 0.41 TCGA-21-5787-01 20 12989918 12989918 G T SPTLC3 Translation_Start_Site p.M1? 0.21 deleterious_low_confidence(0) benign(0.341) TCGA-21-5787-01 20 17417378 17417378 C T PCSK2 Silent p.F245F 0.30 TCGA-21-5787-01 20 1961244 1961244 C G PDYN Missense_Mutation p.A164P 0.22 tolerated(0.1) benign(0.003) TCGA-21-5787-01 20 19677556 19677556 G T SLC24A3 Splice_Site p.X536_splice 0.19 TCGA-21-5787-01 20 25255237 25255237 G T PYGB Missense_Mutation p.A180S 0.20 deleterious(0) probably_damaging(0.981) TCGA-21-5787-01 20 31673958 31673958 A C BPIFB4 Missense_Mutation p.K305T 0.27 deleterious(0.05) benign(0.027) TCGA-21-5787-01 20 34022581 34022581 T A GDF5 Missense_Mutation p.D211V 0.31 deleterious(0.01) possibly_damaging(0.715) TCGA-21-5787-01 20 35569506 35569506 C A SAMHD1 Missense_Mutation p.G95V 0.22 deleterious(0.01) possibly_damaging(0.662) TCGA-21-5787-01 20 40747043 40747043 C T PTPRT Silent p.R994R 0.25 TCGA-21-5787-01 20 4202246 4202246 T A ADRA1D Missense_Mutation p.H548L 0.18 deleterious_low_confidence(0.03) benign(0.002) TCGA-21-5787-01 20 44519371 44519371 G A NEURL2 Missense_Mutation p.A87V 0.44 tolerated(0.12) possibly_damaging(0.775) TCGA-21-5787-01 20 48124434 48124434 C T PTGIS 3'UTR 0.32 TCGA-21-5787-01 20 52782348 52782348 T C CYP24A1 Missense_Mutation p.K222R 0.32 tolerated(0.08) benign(0.017) TCGA-21-5787-01 20 55803413 55803413 G T BMP7 Silent p.S161S 0.36 TCGA-21-5787-01 20 5903358 5903358 G T CHGB Nonsense_Mutation p.E190* 0.18 TCGA-21-5787-01 20 62065176 62065176 G C KCNQ2 Silent p.T368T 0.41 TCGA-21-5787-01 20 62187358 62187358 G - C20orf195 Frame_Shift_Del p.G115Afs*60 0.20 TCGA-21-5787-01 20 62326724 62326724 C T RTEL1 Silent p.I1205I 0.05 TCGA-21-5787-01 21 11039109 11039109 C T BAGE2 RNA 0.04 TCGA-21-5787-01 21 11039361 11039361 C T BAGE2 RNA 0.10 TCGA-21-5787-01 21 31914084 31914084 A G KRTAP19-6 Silent p.Y23Y 0.57 TCGA-21-5787-01 21 32502633 32502633 C A TIAM1 Missense_Mutation p.V1315L 0.59 tolerated(0.46) benign(0) TCGA-21-5787-01 21 33296969 33296969 A G HUNK Missense_Mutation p.K151E 0.46 tolerated(0.15) possibly_damaging(0.593) TCGA-21-5787-01 21 38878446 38878446 C T DYRK1A Missense_Mutation p.P531S 0.31 tolerated(0.05) possibly_damaging(0.521) TCGA-21-5787-01 22 29153172 29153172 A G HSCB 3'UTR 0.59 TCGA-21-5787-01 22 35463099 35463099 C A ISX Missense_Mutation p.P7T 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.563) TCGA-21-5787-01 22 38470389 38470390 GC - PICK1 Frame_Shift_Del p.A306Pfs*108 0.65 TCGA-21-5787-01 22 46751480 46751480 C T TRMU Missense_Mutation p.A338V 0.19 tolerated(0.05) benign(0.062) TCGA-21-5787-01 2 10188590 10188590 A T KLF11 Missense_Mutation p.I376F 0.25 tolerated(0.11) benign(0.02) TCGA-21-5787-01 2 107049452 107049452 C A RGPD3 Missense_Mutation p.R803L 0.19 deleterious(0.02) benign(0.02) TCGA-21-5787-01 2 1079263 1079263 G T SNTG2 Silent p.R44R 0.23 TCGA-21-5787-01 2 11802343 11802343 C A NTSR2 Silent p.V216V 0.20 TCGA-21-5787-01 2 1251115 1251115 G T SNTG2 Missense_Mutation p.W302L 0.29 deleterious(0) probably_damaging(0.999) TCGA-21-5787-01 2 133540314 133540314 C A NCKAP5 Missense_Mutation p.S1357I 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-21-5787-01 2 137814067 137814067 G T THSD7B Missense_Mutation p.G73W 0.45 deleterious(0) probably_damaging(0.992) TCGA-21-5787-01 2 152520222 152520222 G A NEB Missense_Mutation p.S1868F 0.30 benign(0.172) TCGA-21-5787-01 2 15307232 15307232 C - NBAS Frame_Shift_Del p.T2353Lfs*? 0.28 TCGA-21-5787-01 2 155098644 155098644 T A GALNT13 Missense_Mutation p.V138E 0.37 deleterious(0) probably_damaging(0.978) TCGA-21-5787-01 2 164467453 164467453 C A FIGN Missense_Mutation p.G297C 0.42 deleterious(0.01) benign(0.156) TCGA-21-5787-01 2 165947258 165947258 G T SCN3A Missense_Mutation p.P1802H 0.51 deleterious(0) probably_damaging(1) TCGA-21-5787-01 2 166166936 166166936 G T SCN2A Missense_Mutation p.L267F 0.41 deleterious(0) probably_damaging(1) TCGA-21-5787-01 2 167262800 167262800 T G SCN7A Missense_Mutation p.K1447Q 0.45 tolerated(0.3) benign(0.04) TCGA-21-5787-01 2 170488342 170488342 G T PPIG Missense_Mutation p.E276D 0.44 deleterious(0.02) unknown(0) TCGA-21-5787-01 2 17773402 17773402 G T VSNL1 Nonsense_Mutation p.E21* 0.35 TCGA-21-5787-01 2 178762881 178762881 G T PDE11A Missense_Mutation p.D402E 0.34 tolerated(0.07) probably_damaging(0.992) TCGA-21-5787-01 2 179613060 179613060 C T TTN Intron 0.51 TCGA-21-5787-01 2 196723359 196723359 C A DNAH7 Nonsense_Mutation p.E2636* 0.52 TCGA-21-5787-01 2 197631415 197631415 G A GTF3C3 Silent p.L804L 0.49 TCGA-21-5787-01 2 206165406 206165406 A T PARD3B Missense_Mutation p.S718C 0.46 deleterious(0) probably_damaging(1) TCGA-21-5787-01 2 206927738 206927738 C A INO80D Translation_Start_Site p.M1? 0.38 deleterious(0) probably_damaging(0.988) TCGA-21-5787-01 2 21229833 21229833 C A APOB Nonsense_Mutation p.E3303* 0.25 TCGA-21-5787-01 2 215840712 215840712 C T ABCA12 Silent p.L1726L 0.40 TCGA-21-5787-01 2 225642886 225642886 T A DOCK10 Missense_Mutation p.D1924V 0.18 deleterious(0) possibly_damaging(0.732) TCGA-21-5787-01 2 233246046 233246046 C A ALPP Silent p.G426G 0.29 TCGA-21-5787-01 2 241536337 241536337 C T CAPN10 Missense_Mutation p.P574L 0.26 deleterious(0) probably_damaging(0.982) TCGA-21-5787-01 2 26350784 26350784 G A RAB10 Silent p.K161K 0.22 TCGA-21-5787-01 2 28635332 28635332 C A FOSL2 3'UTR 0.17 TCGA-21-5787-01 2 32820204 32820204 A G BIRC6 Silent p.L4535L 0.38 TCGA-21-5787-01 2 47388885 47388885 C G CALM2 Missense_Mutation p.G133A 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.509) TCGA-21-5787-01 2 58312046 58312046 G C VRK2 Missense_Mutation p.E73Q 0.33 deleterious(0) probably_damaging(1) TCGA-21-5787-01 2 63609202 63609202 A G WDPCP Missense_Mutation p.L488P 0.33 tolerated(0.3) benign(0.072) TCGA-21-5787-01 2 63824696 63824696 G T MDH1 Missense_Mutation p.K139N 0.21 tolerated(0.22) probably_damaging(0.962) TCGA-21-5787-01 2 71817372 71817372 G T DYSF Missense_Mutation p.M1176I 0.26 tolerated(1) benign(0) TCGA-21-5787-01 2 74758186 74758187 - C HTRA2 Frame_Shift_Ins p.Q289Pfs*10 0.11 TCGA-21-5787-01 2 77746335 77746335 G C LRRTM4 Missense_Mutation p.I220M 0.17 tolerated(0.07) possibly_damaging(0.779) TCGA-21-5787-01 2 80772182 80772182 G T CTNNA2 Missense_Mutation p.D456Y 0.24 deleterious(0) possibly_damaging(0.601) TCGA-21-5787-01 2 85663660 85663660 C T SH2D6 Silent p.S161S 0.22 TCGA-21-5787-01 2 85823673 85823674 TT - RNF181 Frame_Shift_Del p.L40Gfs*20 0.28 TCGA-21-5787-01 2 89619878 89619878 G T IGKV1-39 5'UTR 0.15 TCGA-21-5787-01 2 90249141 90249141 C A IGKV1D-43 Missense_Mutation p.L33M 0.28 tolerated(0.11) possibly_damaging(0.574) TCGA-21-5787-01 2 96260056 96260056 C A TRIM43 Silent p.T95T 0.18 TCGA-21-5787-01 2 98928923 98928923 C A VWA3B 3'UTR 0.47 TCGA-21-5787-01 3 118948703 118948703 G C B4GALT4 Missense_Mutation p.P82A 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-21-5787-01 3 124437893 124437893 T A RP11-71H17.7 5'Flank 0.18 TCGA-21-5787-01 3 128712011 128712011 G C KIAA1257 Missense_Mutation p.S46C 0.15 deleterious(0.04) benign(0.168) TCGA-21-5787-01 3 134322631 134322631 G T KY Missense_Mutation p.N592K 0.17 tolerated(0.06) probably_damaging(0.977) TCGA-21-5787-01 3 143412110 143412110 A G SLC9A9 Silent p.A191A 0.40 TCGA-21-5787-01 3 151599413 151599413 C G SUCNR1 3'UTR 0.32 TCGA-21-5787-01 3 155200017 155200017 A G PLCH1 Silent p.V1274V 0.17 TCGA-21-5787-01 3 164767661 164767661 G T SI Missense_Mutation p.D505E 0.26 tolerated(0.16) possibly_damaging(0.502) TCGA-21-5787-01 3 164780170 164780170 G T SI Missense_Mutation p.Q337K 0.40 deleterious(0.01) possibly_damaging(0.577) TCGA-21-5787-01 3 164793779 164793779 C A SI Nonsense_Mutation p.G8* 0.27 TCGA-21-5787-01 3 178785487 178785487 C A ZMAT3 Silent p.S18S 0.13 TCGA-21-5787-01 3 184689483 184689483 G T VPS8 Silent p.V1121V 0.27 TCGA-21-5787-01 3 184689484 184689484 G T VPS8 Nonsense_Mutation p.E1122* 0.27 TCGA-21-5787-01 3 197238900 197238900 C T BDH1 Missense_Mutation p.D300N 0.10 tolerated(0.52) benign(0.001) TCGA-21-5787-01 3 25611395 25611395 G T RARB Missense_Mutation p.G199C 0.32 deleterious(0) possibly_damaging(0.89) TCGA-21-5787-01 3 3111753 3111753 G T IL5RA 3'UTR 0.44 TCGA-21-5787-01 3 391221 391221 T A CHL1 Missense_Mutation p.V343E 0.41 deleterious(0) probably_damaging(0.971) TCGA-21-5787-01 3 404903 404903 G T CHL1 Missense_Mutation p.Q474H 0.21 tolerated(0.34) possibly_damaging(0.601) TCGA-21-5787-01 3 40503622 40503622 G A RPL14 Missense_Mutation p.A183T 0.43 deleterious_low_confidence(0) unknown(0) TCGA-21-5787-01 3 432834 432834 C T CHL1 Missense_Mutation p.P928L 0.40 deleterious(0.02) probably_damaging(1) TCGA-21-5787-01 3 47307259 47307259 G A KIF9 Missense_Mutation p.R293W 0.09 deleterious(0) probably_damaging(1) TCGA-21-5787-01 3 49662655 49662655 G T BSN Missense_Mutation p.V158F 0.52 unknown(0) TCGA-21-5787-01 3 51980220 51980220 G T PARP3 Silent p.R386R 0.38 TCGA-21-5787-01 3 55984525 55984525 C G ERC2 Missense_Mutation p.K777N 0.09 tolerated(0.07) benign(0.058) TCGA-21-5787-01 3 62423866 62423866 G T CADPS Silent p.A1230A 0.33 TCGA-21-5787-01 3 67058658 67058658 C A KBTBD8 Missense_Mutation p.T552N 0.33 tolerated(0.36) benign(0.082) TCGA-21-5787-01 3 73433323 73433323 C T PDZRN3 Silent p.T798T 0.39 TCGA-21-5787-01 3 7494373 7494373 G T GRM7 Missense_Mutation p.M418I 0.15 tolerated(0.15) benign(0.173) TCGA-21-5787-01 3 97888265 97888265 G A OR5H15 Missense_Mutation p.C241Y 0.23 deleterious(0) probably_damaging(0.998) TCGA-21-5787-01 3 99552094 99552094 A T FILIP1L Silent p.L1131L 0.17 TCGA-21-5787-01 4 114195682 114195682 G A ANK2 Missense_Mutation p.M520I 0.43 probably_damaging(0.971) TCGA-21-5787-01 4 128651829 128651829 G C SLC25A31 Silent p.R43R 0.41 TCGA-21-5787-01 4 147561554 147561554 C A POU4F2 Missense_Mutation p.T275N 0.26 deleterious(0) probably_damaging(0.987) TCGA-21-5787-01 4 151771880 151771880 T A LRBA Nonsense_Mutation p.R1334* 0.38 TCGA-21-5787-01 4 159076762 159076762 C A FAM198B Splice_Site p.X383_splice 0.35 TCGA-21-5787-01 4 159076763 159076763 C A FAM198B Missense_Mutation p.Q383H 0.36 deleterious(0) probably_damaging(0.977) TCGA-21-5787-01 4 183714418 183714418 G T TENM3 Missense_Mutation p.R2198L 0.40 tolerated(0.44) benign(0.021) TCGA-21-5787-01 4 24556484 24556484 C A DHX15 Missense_Mutation p.R315L 0.10 deleterious(0) probably_damaging(0.92) TCGA-21-5787-01 4 25391798 25391798 G T ANAPC4 Nonsense_Mutation p.E186* 0.15 TCGA-21-5787-01 4 37841787 37841787 G A PGM2 Missense_Mutation p.D209N 0.14 tolerated(0.31) benign(0.018) TCGA-21-5787-01 4 4198985 4198985 T - OTOP1 Frame_Shift_Del p.S526Afs*18 0.33 TCGA-21-5787-01 4 42145769 42145769 C A BEND4 Missense_Mutation p.A244S 0.12 deleterious_low_confidence(0.02) probably_damaging(0.956) TCGA-21-5787-01 4 46043106 46043106 G C GABRG1 Missense_Mutation p.H433D 0.21 tolerated(0.09) probably_damaging(0.983) TCGA-21-5787-01 4 46967068 46967068 G T GABRA4 Silent p.A351A 0.31 TCGA-21-5787-01 4 46973213 46973213 C A GABRA4 Missense_Mutation p.R254L 0.40 deleterious(0) probably_damaging(1) TCGA-21-5787-01 4 47655610 47655610 G A CORIN Silent p.G601G 0.14 TCGA-21-5787-01 4 493149 493149 G A PIGG Missense_Mutation p.A9T 0.32 tolerated(0.13) probably_damaging(1) TCGA-21-5787-01 4 499606 499606 G C PIGG Missense_Mutation p.A154P 0.22 deleterious(0.01) probably_damaging(0.984) TCGA-21-5787-01 4 52890241 52890241 C A SGCB Missense_Mutation p.G280V 0.37 tolerated(0.22) benign(0.015) TCGA-21-5787-01 4 52926996 52926996 G T SPATA18 Missense_Mutation p.W81L 0.29 tolerated(0.1) probably_damaging(0.954) TCGA-21-5787-01 4 54257635 54257635 G C FIP1L1 Missense_Mutation p.E225D 0.32 tolerated_low_confidence(0.12) benign(0.416) TCGA-21-5787-01 4 57182429 57182429 G T KIAA1211 Missense_Mutation p.A921S 0.48 tolerated(0.48) possibly_damaging(0.709) TCGA-21-5787-01 4 86363 86363 G C Z95704.2 RNA 0.52 TCGA-21-5787-01 4 96127913 96127913 G T UNC5C Missense_Mutation p.P590T 0.49 deleterious(0.02) possibly_damaging(0.615) TCGA-21-5787-01 5 11364909 11364909 T C CTNND2 Missense_Mutation p.Y424C 0.21 deleterious(0) probably_damaging(0.971) TCGA-21-5787-01 5 113740484 113740484 G T KCNN2 Missense_Mutation p.G311V 0.46 deleterious(0) probably_damaging(0.946) TCGA-21-5787-01 5 137726770 137726770 G C KDM3B Missense_Mutation p.L483F 0.11 tolerated_low_confidence(0.26) possibly_damaging(0.897) TCGA-21-5787-01 5 140188233 140188233 C T PCDHA4 Silent p.N487N 0.42 TCGA-21-5787-01 5 140242631 140242631 G T AC005609.1 Nonsense_Mutation p.C115* 0.50 TCGA-21-5787-01 5 140482667 140482667 G A PCDHB3 3'UTR 0.40 TCGA-21-5787-01 5 140604611 140604611 C A PCDHB14 Missense_Mutation p.H512N 0.39 tolerated_low_confidence(0.13) benign(0.186) TCGA-21-5787-01 5 147281261 147281261 A G C5orf46 Missense_Mutation p.L49P 0.33 deleterious(0) possibly_damaging(0.883) TCGA-21-5787-01 5 147889347 147889347 G A HTR4 Missense_Mutation p.R250C 0.14 deleterious(0) probably_damaging(0.993) TCGA-21-5787-01 5 149676932 149676932 C A ARSI Missense_Mutation p.A519S 0.28 tolerated(0.07) possibly_damaging(0.871) TCGA-21-5787-01 5 156346549 156346549 T C TIMD4 Silent p.L352L 0.51 TCGA-21-5787-01 5 156378573 156378573 G A TIMD4 Missense_Mutation p.T210I 0.18 deleterious(0.05) probably_damaging(0.973) TCGA-21-5787-01 5 156484938 156484939 - C HAVCR1 Frame_Shift_Ins p.V6Gfs*44 0.30 TCGA-21-5787-01 5 169188602 169188602 G T DOCK2 Missense_Mutation p.V843F 0.19 deleterious(0) probably_damaging(0.942) TCGA-21-5787-01 5 169697761 169697761 G A LCP2 Missense_Mutation p.P162L 0.20 deleterious(0) probably_damaging(0.999) TCGA-21-5787-01 5 176295812 176295812 G T UNC5A Missense_Mutation p.V190L 0.14 tolerated(0.13) benign(0.028) TCGA-21-5787-01 5 176314654 176314654 C A HK3 Silent p.V466V 0.37 TCGA-21-5787-01 5 176334156 176334156 C A UIMC1 Missense_Mutation p.R624L 0.17 deleterious(0.01) possibly_damaging(0.626) TCGA-21-5787-01 5 22078761 22078761 G T CDH12 Missense_Mutation p.L9M 0.12 deleterious(0.05) probably_damaging(0.969) TCGA-21-5787-01 5 23510028 23510028 G C PRDM9 Splice_Site p.X65_splice 0.15 TCGA-21-5787-01 5 24487815 24487815 A G CDH10 Missense_Mutation p.L775P 0.25 deleterious(0) probably_damaging(0.995) TCGA-21-5787-01 5 35965778 35965778 G A UGT3A1 Missense_Mutation p.P185S 0.44 deleterious(0) probably_damaging(1) TCGA-21-5787-01 5 41186173 41186173 T A C6 Missense_Mutation p.E242V 0.19 deleterious(0.02) possibly_damaging(0.478) TCGA-21-5787-01 5 41927343 41927343 A C FBXO4 Missense_Mutation p.M140L 0.13 tolerated(0.11) benign(0.106) TCGA-21-5787-01 5 45262757 45262757 G T HCN1 Missense_Mutation p.L647M 0.08 tolerated(0.19) benign(0.006) TCGA-21-5787-01 5 45645705 45645705 T G HCN1 Missense_Mutation p.Y144S 0.35 deleterious(0) benign(0.084) TCGA-21-5787-01 5 72469058 72469058 C - TMEM174 5'UTR 0.32 TCGA-21-5787-01 5 82837984 82837984 G T VCAN Missense_Mutation p.E3054D 0.39 tolerated(0.1) benign(0.387) TCGA-21-5787-01 6 100896435 100896435 G T SIM1 Silent p.A221A 0.27 TCGA-21-5787-01 6 125233677 125233677 G A RP11-510H23.1 RNA 0.26 TCGA-21-5787-01 6 126080274 126080274 G C HEY2 Missense_Mutation p.A114P 0.37 deleterious(0) benign(0.38) TCGA-21-5787-01 6 151857477 151857477 G T CCDC170 Missense_Mutation p.V28F 0.39 tolerated(0.09) benign(0.047) TCGA-21-5787-01 6 162394435 162394435 T G PARK2 Missense_Mutation p.K211N 0.21 deleterious(0) possibly_damaging(0.451) TCGA-21-5787-01 6 165693501 165693501 G T C6orf118 3'UTR 0.38 TCGA-21-5787-01 6 169637402 169637402 G T THBS2 Missense_Mutation p.S447Y 0.45 deleterious(0) probably_damaging(0.994) TCGA-21-5787-01 6 27806029 27806029 C G HIST1H2AK Missense_Mutation p.R30P 0.11 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-21-5787-01 6 29141346 29141346 C A OR2J2 5'UTR 0.38 TCGA-21-5787-01 6 31084548 31084548 G A CDSN Missense_Mutation p.P282S 0.35 deleterious_low_confidence(0) unknown(0) TCGA-21-5787-01 6 34839685 34839685 G C UHRF1BP1 Missense_Mutation p.E1394Q 0.17 tolerated(0.47) benign(0.002) TCGA-21-5787-01 6 3850460 3850460 G T FAM50B Missense_Mutation p.A139S 0.42 tolerated(0.32) benign(0.016) TCGA-21-5787-01 6 395868 395868 A G IRF4 Missense_Mutation p.E142G 0.32 tolerated(0.08) benign(0.001) TCGA-21-5787-01 6 4070123 4070123 A T FAM217A Missense_Mutation p.F112I 0.25 tolerated(0.09) possibly_damaging(0.474) TCGA-21-5787-01 6 41738623 41738623 G A FRS3 Missense_Mutation p.R405C 0.18 deleterious(0.03) probably_damaging(0.95) TCGA-21-5787-01 6 44218232 44218232 A T HSP90AB1 Missense_Mutation p.T285S 0.25 deleterious(0.01) benign(0.019) TCGA-21-5787-01 6 46661523 46661523 C T TDRD6 Silent p.G1886G 0.40 TCGA-21-5787-01 6 47647862 47647862 C A GPR111 Missense_Mutation p.T176N 0.34 tolerated(0.5) benign(0.001) TCGA-21-5787-01 6 47649302 47649302 C A GPR111 Missense_Mutation p.P336H 0.26 tolerated(0.08) benign(0.023) TCGA-21-5787-01 6 49696558 49696558 T C CRISP3 Missense_Mutation p.K231R 0.24 tolerated(0.17) benign(0.006) TCGA-21-5787-01 6 54173303 54173303 G T TINAG 5'UTR 0.41 TCGA-21-5787-01 6 54735284 54735284 T C FAM83B Silent p.D80D 0.30 TCGA-21-5787-01 6 54805042 54805042 G T FAM83B Missense_Mutation p.V425L 0.40 tolerated(0.06) benign(0.038) TCGA-21-5787-01 6 54805695 54805695 G C FAM83B Missense_Mutation p.L642F 0.30 tolerated(0.06) benign(0.037) TCGA-21-5787-01 6 55198715 55198715 C A GFRAL Missense_Mutation p.L97I 0.23 tolerated(0.11) benign(0.167) TCGA-21-5787-01 6 56350150 56350150 C A DST Missense_Mutation p.G4433V 0.27 probably_damaging(1) TCGA-21-5787-01 6 69758173 69758173 C G BAI3 Nonsense_Mutation p.S735* 0.42 TCGA-21-5787-01 6 75814930 75814930 C A COL12A1 Missense_Mutation p.G2753C 0.33 probably_damaging(1) TCGA-21-5787-01 6 88854435 88854435 T A CNR1 Missense_Mutation p.N187Y 0.50 deleterious(0.02) probably_damaging(0.99) TCGA-21-5787-01 6 90499535 90499535 G C MDN1 Missense_Mutation p.I398M 0.23 probably_damaging(0.99) TCGA-21-5787-01 6 90604410 90604410 A T GJA10 Missense_Mutation p.I75F 0.47 deleterious(0) probably_damaging(0.99) TCGA-21-5787-01 6 96054287 96054287 T G MANEA 3'UTR 0.47 TCGA-21-5787-01 7 1024653 1024653 C A CYP2W1 Missense_Mutation p.S135R 0.27 deleterious(0.03) benign(0.008) TCGA-21-5787-01 7 110763333 110763333 C G LRRN3 Missense_Mutation p.L169V 0.31 deleterious(0) probably_damaging(0.999) TCGA-21-5787-01 7 111430539 111430539 G T DOCK4 Missense_Mutation p.Q1097K 0.22 tolerated(0.06) benign(0.407) TCGA-21-5787-01 7 116415134 116415134 G C MET Silent p.L1094L 0.05 TCGA-21-5787-01 7 117828398 117828398 A T NAA38 Missense_Mutation p.S47C 0.12 deleterious(0) probably_damaging(0.986) TCGA-21-5787-01 7 124493080 124493080 C A POT1 Missense_Mutation p.G272V 0.44 deleterious(0.01) probably_damaging(1) TCGA-21-5787-01 7 128415662 128415662 G T OPN1SW Silent p.R61R 0.15 TCGA-21-5787-01 7 128492756 128492756 C T FLNC Missense_Mutation p.S1985L 0.37 deleterious(0.02) possibly_damaging(0.813) TCGA-21-5787-01 7 129736794 129736794 G T KLHDC10 Missense_Mutation p.R67M 0.59 deleterious_low_confidence(0) benign(0.069) TCGA-21-5787-01 7 136938369 136938369 T G PTN Missense_Mutation p.K44T 0.28 tolerated(0.29) possibly_damaging(0.684) TCGA-21-5787-01 7 137801363 137801363 C A AKR1D1 Intron 0.39 TCGA-21-5787-01 7 138546004 138546004 C T KIAA1549 Missense_Mutation p.V1710I 0.32 tolerated(0.84) benign(0.021) TCGA-21-5787-01 7 140481403 140481403 C T BRAF Missense_Mutation p.G469R 0.14 deleterious(0.01) probably_damaging(0.918) TCGA-21-5787-01 7 141754598 141754598 G C MGAM Silent p.L1068L 0.19 TCGA-21-5787-01 7 142139364 142139364 C G TRBV7-6 Missense_Mutation p.E87D 0.25 deleterious(0.04) benign(0.093) TCGA-21-5787-01 7 150873367 150873367 G A ASB10 Silent p.Y412Y 0.22 TCGA-21-5787-01 7 158590750 158590750 C A ESYT2 Missense_Mutation p.W178C 0.26 deleterious(0) probably_damaging(1) TCGA-21-5787-01 7 56174147 56174147 C A CHCHD2 5'UTR 0.23 TCGA-21-5787-01 7 72865210 72865210 C A BAZ1B Nonsense_Mutation p.E1183* 0.18 TCGA-21-5787-01 7 80387723 80387723 C T SEMA3C Missense_Mutation p.D523N 0.19 deleterious(0) probably_damaging(0.992) TCGA-21-5787-01 7 88965180 88965180 C T ZNF804B Missense_Mutation p.P962S 0.13 tolerated(0.23) benign(0.004) TCGA-21-5787-01 7 92731247 92731247 G A SAMD9 Silent p.F1388F 0.05 TCGA-21-5787-01 7 99704851 99704851 G A TAF6 3'UTR 0.35 TCGA-21-5787-01 8 105025682 105025682 A T RIMS2 Silent p.A1019A 0.25 TCGA-21-5787-01 8 106811149 106811149 C A ZFPM2 Missense_Mutation p.L313I 0.26 tolerated(0.06) probably_damaging(0.999) TCGA-21-5787-01 8 106814663 106814663 C A ZFPM2 Missense_Mutation p.H785N 0.18 deleterious(0.01) possibly_damaging(0.504) TCGA-21-5787-01 8 113697955 113697955 C T CSMD3 Missense_Mutation p.C721Y 0.24 deleterious(0) probably_damaging(1) TCGA-21-5787-01 8 125565595 125565595 C T MTSS1 Missense_Mutation p.G636R 0.19 deleterious(0.03) probably_damaging(1) TCGA-21-5787-01 8 139611078 139611078 C A COL22A1 Nonsense_Mutation p.G1417* 0.27 TCGA-21-5787-01 8 142231724 142231724 C A SLC45A4 Missense_Mutation p.V77F 0.23 deleterious(0.03) benign(0.017) TCGA-21-5787-01 8 143960541 143960541 T G CYP11B1 Missense_Mutation p.Q101P 0.44 tolerated(0.21) possibly_damaging(0.864) TCGA-21-5787-01 8 145135440 145135440 A T EXOSC4 Missense_Mutation p.H225L 0.43 tolerated(0.57) benign(0.002) TCGA-21-5787-01 8 145699739 145699739 A G FOXH1 Missense_Mutation p.L327P 0.19 deleterious(0) probably_damaging(0.999) TCGA-21-5787-01 8 23429382 23429382 A T SLC25A37 3'UTR 0.36 TCGA-21-5787-01 8 32621848 32621848 C A NRG1 Silent p.R622R 0.20 TCGA-21-5787-01 8 42623538 42623538 C A CHRNA6 Silent p.G12G 0.44 TCGA-21-5787-01 8 43155726 43155726 C A RNU6-104P 5'Flank 0.09 TCGA-21-5787-01 8 48955617 48955617 G T UBE2V2 Missense_Mutation p.R14L 0.25 tolerated(0.07) benign(0.122) TCGA-21-5787-01 8 49832788 49832788 C A SNAI2 Missense_Mutation p.D98Y 0.28 tolerated(0.06) possibly_damaging(0.825) TCGA-21-5787-01 8 52322064 52322064 G T PXDNL Missense_Mutation p.S707Y 0.34 deleterious(0) probably_damaging(0.996) TCGA-21-5787-01 8 79650857 79650857 A T IL7 Nonsense_Mutation p.L81* 0.15 TCGA-21-5787-01 8 80577099 80577099 T A STMN2 3'UTR 0.33 TCGA-21-5787-01 8 82441723 82441723 T A FABP12 Nonsense_Mutation p.K66* 0.14 TCGA-21-5787-01 8 99962918 99962918 C A OSR2 Missense_Mutation p.Q231K 0.31 tolerated(0.27) benign(0.059) TCGA-21-5787-01 8 99963890 99963890 G C OSR2 Silent p.R300R 0.28 TCGA-21-5787-01 9 104433081 104433081 G T GRIN3A Missense_Mutation p.P538H 0.24 deleterious(0) probably_damaging(0.996) TCGA-21-5787-01 9 109773256 109773256 G T ZNF462 Missense_Mutation p.C2489F 0.32 benign(0.079) TCGA-21-5787-01 9 121929944 121929944 G C BRINP1 Missense_Mutation p.S568R 0.11 deleterious(0) probably_damaging(0.969) TCGA-21-5787-01 9 131730888 131730888 G C NUP188 Missense_Mutation p.S230T 0.29 tolerated(0.61) benign(0.006) TCGA-21-5787-01 9 134394307 134394307 C T POMT1 Silent p.S505S 0.21 TCGA-21-5787-01 9 138669247 138669247 G A KCNT1 Missense_Mutation p.V805I 0.33 tolerated(0.05) possibly_damaging(0.691) TCGA-21-5787-01 9 139405214 139405214 C A NOTCH1 Silent p.P877P 0.22 TCGA-21-5787-01 9 19089422 19089422 T C HAUS6 Missense_Mutation p.Q191R 0.07 deleterious(0.01) possibly_damaging(0.756) TCGA-21-5787-01 9 21994137 21994137 C G RP11-149I2.4 5'Flank 0.37 TCGA-21-5787-01 9 21994138 21994138 C A RP11-149I2.4 5'Flank 0.39 TCGA-21-5787-01 9 22451417 22451417 G T DMRTA1 Missense_Mutation p.R341M 0.49 deleterious(0) probably_damaging(0.946) TCGA-21-5787-01 9 23692818 23692818 C T ELAVL2 Missense_Mutation p.G273R 0.46 deleterious(0.03) benign(0.288) TCGA-21-5787-01 9 5968861 5968861 C A KIAA2026 Missense_Mutation p.R457M 0.66 deleterious(0) probably_damaging(0.999) TCGA-21-5787-01 9 95872957 95872957 C T C9orf89 Silent p.I86I 0.19 TCGA-21-5787-01 X 107977058 107977058 C A IRS4 Missense_Mutation p.R839S 0.50 tolerated(0.07) unknown(0) TCGA-21-5787-01 X 109694517 109694517 C G RGAG1 Silent p.P224P 0.43 TCGA-21-5787-01 X 109694617 109694617 C A RGAG1 Missense_Mutation p.L258M 0.49 deleterious(0.01) probably_damaging(1) TCGA-21-5787-01 X 11200215 11200215 G - ARHGAP6 Frame_Shift_Del p.R433Efs*9 0.39 TCGA-21-5787-01 X 17746085 17746085 G T NHS Missense_Mutation p.G1266C 0.39 tolerated_low_confidence(0.07) benign(0.029) TCGA-21-5787-01 X 26157249 26157249 C A MAGEB18 Silent p.P49P 0.24 TCGA-21-5787-01 X 84502614 84502614 G T ZNF711 Silent p.T12T 0.45 TCGA-21-A5DI-01 10 108412199 108412199 C T SORCS1 Missense_Mutation p.D806N 0.14 tolerated(0.22) benign(0.099) TCGA-21-A5DI-01 10 28023699 28023699 G T MKX Missense_Mutation p.T175N 0.14 tolerated(1) benign(0) TCGA-21-A5DI-01 10 436226 436226 T A DIP2C Missense_Mutation p.N491I 0.12 tolerated(0.08) possibly_damaging(0.642) TCGA-21-A5DI-01 10 49431269 49431269 T - FRMPD2 Frame_Shift_Del p.I405* 0.24 TCGA-21-A5DI-01 10 50531902 50531902 G T C10orf71 Missense_Mutation p.D438Y 0.11 deleterious(0.03) possibly_damaging(0.493) TCGA-21-A5DI-01 10 52595857 52595857 A G A1CF Missense_Mutation p.M202T 0.16 deleterious(0.01) possibly_damaging(0.651) TCGA-21-A5DI-01 10 5966353 5966353 C T FBXO18 Silent p.T877T 0.22 TCGA-21-A5DI-01 11 118347536 118347536 C T KMT2A Missense_Mutation p.S1058L 0.13 possibly_damaging(0.788) TCGA-21-A5DI-01 11 11955394 11955394 T C USP47 Missense_Mutation p.L526S 0.28 tolerated(0.4) benign(0.01) TCGA-21-A5DI-01 11 124738901 124738901 G T ROBO3 Missense_Mutation p.A122S 0.22 tolerated(1) probably_damaging(0.999) TCGA-21-A5DI-01 11 32663522 32663522 C A CCDC73 Missense_Mutation p.R349I 0.24 deleterious(0.03) possibly_damaging(0.648) TCGA-21-A5DI-01 11 4388834 4388834 G A OR52B4 Missense_Mutation p.P231L 0.24 deleterious(0.01) probably_damaging(0.968) TCGA-21-A5DI-01 11 5068171 5068171 C T OR52J3 Missense_Mutation p.T139I 0.29 deleterious(0.01) benign(0.367) TCGA-21-A5DI-01 11 5173165 5173165 C G OR52A1 Missense_Mutation p.Q145H 0.14 tolerated(0.27) benign(0.005) TCGA-21-A5DI-01 11 55541066 55541066 C A OR5D13 Silent p.I51I 0.16 TCGA-21-A5DI-01 11 56344562 56344562 G C OR5M10 Missense_Mutation p.F212L 0.16 tolerated(1) benign(0.012) TCGA-21-A5DI-01 11 58602233 58602233 T C GLYATL2 Missense_Mutation p.N185S 0.21 deleterious(0) possibly_damaging(0.578) TCGA-21-A5DI-01 11 61161450 61161450 T C TMEM216 Splice_Site p.X77_splice 0.23 TCGA-21-A5DI-01 11 66083589 66083589 C T CD248 Missense_Mutation p.E304K 0.11 deleterious(0.02) possibly_damaging(0.733) TCGA-21-A5DI-01 11 6977669 6977669 G T ZNF215 Missense_Mutation p.E487D 0.06 tolerated(0.08) benign(0.028) TCGA-21-A5DI-01 11 88780659 88780659 G T GRM5 Missense_Mutation p.R128S 0.22 tolerated(0.2) possibly_damaging(0.674) TCGA-21-A5DI-01 12 112630987 112630987 T A HECTD4 Silent p.P2842P 0.12 TCGA-21-A5DI-01 12 117583899 117583899 T G FBXO21 Missense_Mutation p.D627A 0.16 deleterious_low_confidence(0.02) benign(0.002) TCGA-21-A5DI-01 12 15654583 15654583 C T PTPRO Missense_Mutation p.R231C 0.23 deleterious_low_confidence(0) benign(0.386) TCGA-21-A5DI-01 12 21327595 21327595 T A SLCO1B1 Missense_Mutation p.M104K 0.39 deleterious(0) probably_damaging(1) TCGA-21-A5DI-01 12 2760773 2760773 C A CACNA1C Intron 0.51 TCGA-21-A5DI-01 12 40041738 40041738 A T C12orf40 Missense_Mutation p.T177S 0.12 tolerated(1) benign(0.002) TCGA-21-A5DI-01 12 4736202 4736202 A T AKAP3 Silent p.V622V 0.39 TCGA-21-A5DI-01 12 50847445 50847445 A T LARP4 Missense_Mutation p.E336V 0.30 deleterious(0.02) possibly_damaging(0.521) TCGA-21-A5DI-01 12 56818917 56818917 C T TIMELESS Missense_Mutation p.R533K 0.22 tolerated(1) benign(0) TCGA-21-A5DI-01 12 65640141 65640141 A T LEMD3 3'UTR 0.17 TCGA-21-A5DI-01 12 72058285 72058285 G A THAP2 5'UTR 0.22 TCGA-21-A5DI-01 14 101488418 101488418 T C MIR379 RNA 0.10 TCGA-21-A5DI-01 14 30046582 30046582 C G PRKD1 Silent p.L867L 0.24 TCGA-21-A5DI-01 14 91691208 91691208 A G C14orf159 3'UTR 0.32 TCGA-21-A5DI-01 14 94401062 94401062 T C ASB2 Silent p.L616L 0.31 TCGA-21-A5DI-01 15 25219558 25219558 T G SNRPN 5'UTR 0.12 TCGA-21-A5DI-01 15 25327969 25327969 G A SNORD116-16 RNA 0.05 TCGA-21-A5DI-01 15 54007496 54007496 G T WDR72 Silent p.V136V 0.24 TCGA-21-A5DI-01 15 78783066 78783066 A G IREB2 Missense_Mutation p.R763G 0.09 deleterious(0.02) probably_damaging(0.997) TCGA-21-A5DI-01 15 83561550 83561550 C A HOMER2 Missense_Mutation p.D17Y 0.15 deleterious(0) probably_damaging(1) TCGA-21-A5DI-01 16 30680710 30680710 G T FBRS Missense_Mutation p.R896L 0.21 possibly_damaging(0.858) TCGA-21-A5DI-01 16 3451983 3451983 G C ZNF174 5'UTR 0.05 TCGA-21-A5DI-01 16 48595473 48595473 G C N4BP1 Missense_Mutation p.Q361E 0.14 deleterious(0.03) benign(0.053) TCGA-21-A5DI-01 16 49314848 49314848 T - CBLN1 Frame_Shift_Del p.R124Dfs*6 0.10 TCGA-21-A5DI-01 16 51173297 51173297 C T SALL1 Missense_Mutation p.E946K 0.11 tolerated(0.08) benign(0.002) TCGA-21-A5DI-01 16 57095381 57095381 G A NLRC5 Silent p.R1336R 0.09 TCGA-21-A5DI-01 16 67236656 67236656 C T ELMO3 Missense_Mutation p.R562W 0.14 deleterious(0) probably_damaging(1) TCGA-21-A5DI-01 16 70908214 70908214 C T HYDIN Missense_Mutation p.V3648M 0.09 probably_damaging(0.934) TCGA-21-A5DI-01 16 812741 812741 C T MSLN Missense_Mutation p.L21F 0.12 tolerated(0.17) benign(0.09) TCGA-21-A5DI-01 17 10399799 10399799 T C MYH1 Missense_Mutation p.E1575G 0.11 deleterious(0.01) possibly_damaging(0.582) TCGA-21-A5DI-01 17 10432957 10432957 T C MYH2 Missense_Mutation p.D1014G 0.38 deleterious(0.05) probably_damaging(1) TCGA-21-A5DI-01 17 4535538 4535538 G A ALOX15 Missense_Mutation p.H527Y 0.36 tolerated(0.08) benign(0.017) TCGA-21-A5DI-01 17 6616710 6616710 G A SLC13A5 5'UTR 0.46 TCGA-21-A5DI-01 17 7579312 7579312 C A TP53 Silent p.T125T 0.42 TCGA-21-A5DI-01 17 7674144 7674144 G C DNAH2 Missense_Mutation p.V1419L 0.11 probably_damaging(0.919) TCGA-21-A5DI-01 17 8077754 8077754 G T TMEM107 Intron 0.12 TCGA-21-A5DI-01 17 9757889 9757889 C T GLP2R Silent p.F194F 0.40 TCGA-21-A5DI-01 18 12427232 12427232 A G SLMO1 Silent p.T125T 0.17 TCGA-21-A5DI-01 18 43664546 43664546 T C ATP5A1 Missense_Mutation p.S502G 0.16 tolerated_low_confidence(0.18) benign(0.005) TCGA-21-A5DI-01 18 55322598 55322598 A C ATP8B1 Missense_Mutation p.M920R 0.12 deleterious(0) possibly_damaging(0.899) TCGA-21-A5DI-01 18 7050695 7050695 C G LAMA1 Missense_Mutation p.E196Q 0.14 deleterious(0) probably_damaging(0.982) TCGA-21-A5DI-01 19 12984254 12984254 C T MAST1 Missense_Mutation p.S1127L 0.12 deleterious(0) probably_damaging(0.995) TCGA-21-A5DI-01 19 36964301 36964301 C T ZNF566 Silent p.L23L 0.16 TCGA-21-A5DI-01 19 43359740 43359740 T C PSG10P RNA 0.21 TCGA-21-A5DI-01 19 47217163 47217163 G T PRKD2 Silent p.S112S 0.16 TCGA-21-A5DI-01 19 54725867 54725867 G T LILRB3 Missense_Mutation p.P164H 0.17 tolerated(0.08) possibly_damaging(0.767) TCGA-21-A5DI-01 19 5616182 5616182 T C SAFB2 Silent p.A168A 0.28 TCGA-21-A5DI-01 19 57646858 57646858 C T ZIM3 Missense_Mutation p.E283K 0.21 tolerated(0.2) benign(0.009) TCGA-21-A5DI-01 1 110034176 110034177 - T ATXN7L2 Frame_Shift_Ins p.E665* 0.15 TCGA-21-A5DI-01 1 154960758 154960758 G A FLAD1 Missense_Mutation p.D184N 0.08 deleterious(0) probably_damaging(1) TCGA-21-A5DI-01 1 157551435 157551435 C G FCRL4 Splice_Site p.X379_splice 0.26 TCGA-21-A5DI-01 1 167038271 167038271 G A GPA33 Silent p.S101S 0.12 TCGA-21-A5DI-01 1 179077475 179077475 C A ABL2 Missense_Mutation p.R976L 0.18 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-21-A5DI-01 1 204948662 204948662 C T NFASC Silent p.S717S 0.12 TCGA-21-A5DI-01 1 207013284 207013284 C A IL19 Silent p.I138I 0.20 TCGA-21-A5DI-01 1 24078057 24078057 C G TCEB3 Nonsense_Mutation p.S347* 0.12 TCGA-21-A5DI-01 1 244552317 244552317 C G C1orf100 Silent p.L130L 0.09 TCGA-21-A5DI-01 1 247655087 247655087 C T OR2W5 RNA 0.11 TCGA-21-A5DI-01 1 248458776 248458776 G T OR2T12 Silent p.T35T 0.14 TCGA-21-A5DI-01 1 248737486 248737486 C T OR2T34 Silent p.K191K 0.15 TCGA-21-A5DI-01 1 34276428 34276428 G A CSMD2 Silent p.G414G 0.10 TCGA-21-A5DI-01 1 34276429 34276429 C A CSMD2 Missense_Mutation p.G414V 0.10 deleterious(0) probably_damaging(1) TCGA-21-A5DI-01 1 47046253 47046253 G A MKNK1 Silent p.A61A 0.07 TCGA-21-A5DI-01 1 47183648 47183648 C A EFCAB14 Missense_Mutation p.D38Y 0.08 deleterious(0.02) probably_damaging(0.982) TCGA-21-A5DI-01 1 48821356 48821356 G C SPATA6 Missense_Mutation p.Q394E 0.16 tolerated(0.09) benign(0.005) TCGA-21-A5DI-01 1 89479930 89479930 G C GBP3 Nonsense_Mutation p.S154* 0.10 TCGA-21-A5DI-01 1 89655976 89655976 A G GBP4 Silent p.Y314Y 0.14 TCGA-21-A5DI-01 20 1285991 1285991 G T SNPH Missense_Mutation p.A260S 0.19 tolerated(0.51) benign(0.075) TCGA-21-A5DI-01 20 48558232 48558232 A G RNF114 Missense_Mutation p.H92R 0.26 tolerated(1) benign(0.001) TCGA-21-A5DI-01 21 46000339 46000339 C G KRTAP10-5 Silent p.L39L 0.14 TCGA-21-A5DI-01 22 32587287 32587287 G A RFPL2 Silent p.D203D 0.14 TCGA-21-A5DI-01 2 102499131 102499131 T C MAP4K4 Silent p.C1023C 0.09 TCGA-21-A5DI-01 2 132021555 132021555 T C POTEE Missense_Mutation p.Y843H 0.16 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-21-A5DI-01 2 136691532 136691532 C G DARS Missense_Mutation p.R151P 0.14 tolerated(0.1) possibly_damaging(0.822) TCGA-21-A5DI-01 2 176948272 176948272 T A EVX2 Missense_Mutation p.N78I 0.12 deleterious(0.04) benign(0.074) TCGA-21-A5DI-01 2 179472569 179472569 C T TTN Missense_Mutation p.A17649T 0.20 TCGA-21-A5DI-01 2 179475859 179475859 A G TTN Silent p.D16999D 0.11 TCGA-21-A5DI-01 2 207425869 207425869 A G ADAM23 Missense_Mutation p.Y396C 0.21 deleterious(0.05) probably_damaging(0.954) TCGA-21-A5DI-01 2 233028222 233028222 G T DIS3L2 Missense_Mutation p.G335V 0.07 deleterious(0) probably_damaging(0.98) TCGA-21-A5DI-01 2 27165477 27165477 C A DPYSL5 Missense_Mutation p.H433Q 0.13 deleterious(0.03) benign(0.281) TCGA-21-A5DI-01 2 3392283 3392283 G T TRAPPC12 Missense_Mutation p.A297S 0.16 tolerated(0.06) benign(0.339) TCGA-21-A5DI-01 2 33952674 33952674 G A AC009499.1 Intron 0.20 TCGA-21-A5DI-01 2 70188036 70188036 G A ASPRV1 Missense_Mutation p.S262F 0.07 deleterious(0) probably_damaging(0.975) TCGA-21-A5DI-01 2 74153998 74153998 G T DGUOK 5'UTR 0.19 TCGA-21-A5DI-01 2 75929304 75929304 C T GCFC2 Intron 0.10 TCGA-21-A5DI-01 2 85276637 85276637 C T KCMF1 Silent p.T250T 0.24 TCGA-21-A5DI-01 3 105239005 105239005 G A ALCAM Nonsense_Mutation p.W56* 0.15 TCGA-21-A5DI-01 3 108403184 108403184 C T DZIP3 Missense_Mutation p.P1002L 0.32 deleterious(0.03) benign(0.424) TCGA-21-A5DI-01 3 112358528 112358528 C T CCDC80 Silent p.Q75Q 0.43 TCGA-21-A5DI-01 3 115738478 115738478 T A LSAMP Missense_Mutation p.K133M 0.14 deleterious(0) probably_damaging(0.957) TCGA-21-A5DI-01 3 121980586 121980586 T A CASR Missense_Mutation p.I235N 0.08 tolerated(0.06) probably_damaging(0.997) TCGA-21-A5DI-01 3 124538604 124538605 - T ITGB5 Frame_Shift_Ins p.N340Kfs*34 0.12 TCGA-21-A5DI-01 3 169539982 169539982 G C LRRIQ4 Silent p.G91G 0.19 TCGA-21-A5DI-01 3 184298371 184298371 A G EPHB3 Missense_Mutation p.D785G 0.35 tolerated(0.07) benign(0.333) TCGA-21-A5DI-01 3 197665423 197665423 C TAA IQCG Frame_Shift_Ins p.D171Lfs*9 0.09 TCGA-21-A5DI-01 3 26751398 26751398 A C LRRC3B Missense_Mutation p.I79L 0.24 tolerated(0.28) benign(0.007) TCGA-21-A5DI-01 3 27758980 27758980 A T EOMES Missense_Mutation p.Y548N 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-21-A5DI-01 3 44635767 44635767 G C ZNF660 Missense_Mutation p.E28Q 0.12 tolerated(0.45) benign(0.01) TCGA-21-A5DI-01 3 93783344 93783344 G A NSUN3 Missense_Mutation p.E26K 0.22 deleterious(0) benign(0.309) TCGA-21-A5DI-01 3 97454889 97454889 G T EPHA6 Missense_Mutation p.D1019Y 0.14 deleterious(0) probably_damaging(0.975) TCGA-21-A5DI-01 4 120442183 120442183 C G PDE5A Missense_Mutation p.K604N 0.11 deleterious(0) possibly_damaging(0.9) TCGA-21-A5DI-01 4 139157506 139157506 C G SLC7A11 Missense_Mutation p.R126P 0.21 deleterious(0) probably_damaging(1) TCGA-21-A5DI-01 4 147795985 147795985 A G TTC29 Silent p.L228L 0.11 TCGA-21-A5DI-01 4 154214178 154214178 G A TRIM2 Silent p.R166R 0.12 TCGA-21-A5DI-01 4 159569678 159569678 T C RXFP1 Missense_Mutation p.I595T 0.22 deleterious(0.02) possibly_damaging(0.896) TCGA-21-A5DI-01 4 160253651 160253651 C - RAPGEF2 Frame_Shift_Del p.H487Tfs*21 0.18 TCGA-21-A5DI-01 4 185683669 185683669 C A ACSL1 Silent p.V510V 0.11 TCGA-21-A5DI-01 4 24538767 24538767 C G DHX15 Missense_Mutation p.A606P 0.15 tolerated(0.13) possibly_damaging(0.892) TCGA-21-A5DI-01 4 37592338 37592338 C T C4orf19 Nonsense_Mutation p.Q221* 0.15 TCGA-21-A5DI-01 4 94411910 94411910 G C GRID2 Missense_Mutation p.R660P 0.12 deleterious(0.01) probably_damaging(1) TCGA-21-A5DI-01 4 95255648 95255648 T C HPGDS Missense_Mutation p.T45A 0.14 tolerated(0.1) benign(0.001) TCGA-21-A5DI-01 5 1033542 1033542 C G NKD2 Missense_Mutation p.S86R 0.38 tolerated(0.16) possibly_damaging(0.732) TCGA-21-A5DI-01 5 127448595 127448595 C A SLC12A2 Silent p.V282V 0.28 TCGA-21-A5DI-01 5 149314245 149314245 C G PDE6A Missense_Mutation p.E171Q 0.18 tolerated(0.08) probably_damaging(0.991) TCGA-21-A5DI-01 5 173035290 173035290 C T BOD1 3'UTR 0.33 TCGA-21-A5DI-01 5 180057053 180057053 C T FLT4 Missense_Mutation p.R189Q 0.23 tolerated(0.27) benign(0.009) TCGA-21-A5DI-01 5 21459687 21459687 A T GUSBP1 RNA 0.07 TCGA-21-A5DI-01 5 37196022 37196022 G T C5orf42 Missense_Mutation p.A1250E 0.06 deleterious(0.02) benign(0.022) TCGA-21-A5DI-01 5 45645442 45645442 C A HCN1 Missense_Mutation p.V232L 0.44 tolerated(0.21) probably_damaging(0.992) TCGA-21-A5DI-01 5 73072389 73072389 A G ARHGEF28 Silent p.E236E 0.26 TCGA-21-A5DI-01 5 79029638 79029638 G C CMYA5 Missense_Mutation p.E1684Q 0.16 benign(0.032) TCGA-21-A5DI-01 5 86659181 86659181 G A RASA1 Nonsense_Mutation p.W490* 0.21 TCGA-21-A5DI-01 6 107006462 107006462 C G AIM1 Missense_Mutation p.F1531L 0.10 tolerated(0.16) possibly_damaging(0.583) TCGA-21-A5DI-01 6 135726107 135726107 T C AHI1 Missense_Mutation p.I990M 0.10 tolerated(0.31) benign(0.045) TCGA-21-A5DI-01 6 158925206 158925206 G T TULP4 Missense_Mutation p.R1504L 0.33 deleterious(0) probably_damaging(0.999) TCGA-21-A5DI-01 6 26250652 26250652 A C HIST1H3F Missense_Mutation p.L61R 0.05 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-21-A5DI-01 6 26423163 26423163 C T BTN2A3P Intron 0.22 TCGA-21-A5DI-01 6 31750141 31750141 C A VARS Missense_Mutation p.A691S 0.07 tolerated(0.1) benign(0.167) TCGA-21-A5DI-01 6 47976644 47976644 T A PTCHD4 Missense_Mutation p.E211D 0.16 tolerated(1) benign(0) TCGA-21-A5DI-01 6 6006970 6006970 A G NRN1 Silent p.L5L 0.25 TCGA-21-A5DI-01 6 83075026 83075044 GCTGGCGGAGCTGGCCGCG - TPBG Frame_Shift_Del p.L117Sfs*56 0.47 TCGA-21-A5DI-01 7 100682194 100682194 T A MUC17 Silent p.T2499T 0.23 TCGA-21-A5DI-01 7 102212968 102212968 T C POLR2J3 Translation_Start_Site p.M1? 0.05 deleterious(0) possibly_damaging(0.606) TCGA-21-A5DI-01 7 117828373 117828373 G T NAA38 Missense_Mutation p.L38F 0.25 deleterious(0) probably_damaging(0.984) TCGA-21-A5DI-01 7 47941993 47941993 C G PKD1L1 Missense_Mutation p.G683R 0.27 deleterious(0) probably_damaging(1) TCGA-21-A5DI-01 7 75614125 75614125 G A POR Missense_Mutation p.C366Y 0.30 deleterious(0) probably_damaging(0.997) TCGA-21-A5DI-01 7 82579870 82579870 T G PCLO Missense_Mutation p.E3345A 0.10 unknown(0) TCGA-21-A5DI-01 7 89939419 89939419 C T C7orf63 Missense_Mutation p.P898L 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-21-A5DI-01 7 94176480 94176480 A G CASD1 Missense_Mutation p.Y569C 0.09 tolerated(0.05) possibly_damaging(0.716) TCGA-21-A5DI-01 8 102555640 102555640 C T GRHL2 Silent p.L64L 0.11 TCGA-21-A5DI-01 8 109797322 109797322 C A TMEM74 Missense_Mutation p.E2D 0.24 deleterious(0) probably_damaging(0.997) TCGA-21-A5DI-01 8 116631590 116631590 G A TRPS1 Silent p.Y245Y 0.09 TCGA-21-A5DI-01 8 133923698 133923698 A T TG Missense_Mutation p.E1360V 0.19 deleterious(0.01) possibly_damaging(0.776) TCGA-21-A5DI-01 8 139144836 139144836 C A FAM135B Nonstop_Mutation p.*1407Yext*3 0.08 TCGA-21-A5DI-01 8 2800050 2800050 C A CSMD1 Silent p.L3493L 0.15 TCGA-21-A5DI-01 8 61736499 61736499 G T CHD7 Missense_Mutation p.C1101F 0.21 probably_damaging(0.998) TCGA-21-A5DI-01 8 97797223 97797223 T A CPQ Missense_Mutation p.F33Y 0.13 tolerated(0.1) benign(0.141) TCGA-21-A5DI-01 9 114199366 114199366 T C KIAA0368 Missense_Mutation p.S366G 0.35 tolerated(0.09) benign(0.019) TCGA-21-A5DI-01 9 119976865 119976865 G C ASTN2 Missense_Mutation p.Q263E 0.28 deleterious_low_confidence(0.02) unknown(0) TCGA-21-A5DI-01 9 125281924 125281924 T C OR1J4 Missense_Mutation p.C169R 0.26 deleterious_low_confidence(0) benign(0.111) TCGA-21-A5DI-01 9 136251446 136251446 C T C9orf96 Nonsense_Mutation p.Q89* 0.08 TCGA-21-A5DI-01 9 140611444 140611444 C G EHMT1 Missense_Mutation p.A151G 0.04 tolerated_low_confidence(0.09) probably_damaging(0.996) TCGA-21-A5DI-01 9 98231086 98231086 A G PTCH1 Missense_Mutation p.S733P 0.14 deleterious(0.01) possibly_damaging(0.723) TCGA-21-A5DI-01 X 151283517 151283517 C T RP11-1007I13.4 RNA 0.41 TCGA-21-A5DI-01 X 1720387 1720387 G A AKAP17A Missense_Mutation p.R663Q 0.41 tolerated_low_confidence(0.42) unknown(0) TCGA-21-A5DI-01 X 27999511 27999511 G C DCAF8L1 5'UTR 0.56 TCGA-21-A5DI-01 X 37026638 37026638 C T FAM47C Missense_Mutation p.T52M 0.18 deleterious(0) probably_damaging(0.934) TCGA-21-A5DI-01 X 47074261 47074261 A T UBA1 Missense_Mutation p.E1037V 0.29 deleterious(0) probably_damaging(0.951) TCGA-22-0940-01 10 119003554 119003554 C T SLC18A2 Missense_Mutation p.P65L 0.06 deleterious(0.04) possibly_damaging(0.686) TCGA-22-0940-01 10 31809364 31809364 A C ZEB1 Silent p.S368S 0.11 TCGA-22-0940-01 10 37419248 37419248 T C ANKRD30A Missense_Mutation p.I95T 0.11 deleterious(0.04) benign(0.011) TCGA-22-0940-01 10 46321368 46321368 C G AGAP4 Missense_Mutation p.V663L 0.09 deleterious_low_confidence(0.01) benign(0.003) TCGA-22-0940-01 10 51465175 51465175 C T AGAP7 Silent p.E427E 0.22 TCGA-22-0940-01 10 55581967 55581967 C T PCDH15 Missense_Mutation p.C1842Y 0.09 tolerated_low_confidence(0.26) unknown(0) TCGA-22-0940-01 10 55780030 55780030 A T PCDH15 Missense_Mutation p.S891R 0.10 tolerated(0.06) benign(0.071) TCGA-22-0940-01 10 61868713 61868713 G A ANK3 Silent p.A1016A 0.13 TCGA-22-0940-01 10 75559228 75559228 C A ZSWIM8 Missense_Mutation p.P1549T 0.24 tolerated(0.15) benign(0.235) TCGA-22-0940-01 10 7820831 7820831 T A KIN Missense_Mutation p.Q176H 0.15 deleterious(0) probably_damaging(0.994) TCGA-22-0940-01 10 8056660 8056660 T C TAF3 Silent p.C912C 0.23 TCGA-22-0940-01 10 85974251 85974251 C T CDHR1 Silent p.L818L 0.10 TCGA-22-0940-01 11 102195657 102195657 A T BIRC3 Silent p.S139S 0.25 TCGA-22-0940-01 11 117058368 117058368 G T SIDT2 Missense_Mutation p.G371V 0.20 tolerated(0.06) benign(0.345) TCGA-22-0940-01 11 117241922 117241922 G - CEP164 Frame_Shift_Del p.G298Afs*31 0.22 TCGA-22-0940-01 11 123516310 123516310 G C SCN3B Silent p.G68G 0.23 TCGA-22-0940-01 11 123753855 123753855 C A TMEM225 Missense_Mutation p.W223L 0.19 deleterious(0) possibly_damaging(0.641) TCGA-22-0940-01 11 1253924 1253924 C A MUC5B Nonsense_Mutation p.C663* 0.17 TCGA-22-0940-01 11 130131091 130131091 T A ZBTB44 Missense_Mutation p.L226F 0.15 tolerated(0.1) possibly_damaging(0.766) TCGA-22-0940-01 11 133800964 133800964 C T IGSF9B Silent p.L478L 0.16 TCGA-22-0940-01 11 134014252 134014252 G C JAM3 Missense_Mutation p.E125Q 0.27 tolerated(0.36) benign(0.288) TCGA-22-0940-01 11 48346823 48346823 T A OR4C3 Missense_Mutation p.L111M 0.04 deleterious(0.01) possibly_damaging(0.483) TCGA-22-0940-01 11 49831326 49831326 A T RP11-707M1.1 RNA 0.30 TCGA-22-0940-01 11 5443649 5443649 G C OR51Q1 Silent p.L73L 0.16 TCGA-22-0940-01 11 55065464 55065464 C T TRIM51HP RNA 0.20 TCGA-22-0940-01 11 55433619 55433619 C A OR4C6 3'UTR 0.26 TCGA-22-0940-01 11 55761454 55761454 G T OR5F1 Silent p.S216S 0.09 TCGA-22-0940-01 11 56185651 56185651 G C OR5R1 Missense_Mutation p.R20G 0.20 deleterious(0.02) benign(0.31) TCGA-22-0940-01 11 56954964 56954964 C G LRRC55 3'UTR 0.31 TCGA-22-0940-01 11 57996201 57996201 G T OR10Q1 Silent p.I49I 0.12 TCGA-22-0940-01 11 58893346 58893346 G A FAM111B Silent p.V592V 0.20 TCGA-22-0940-01 11 60075679 60075679 C T MS4A4A 3'UTR 0.09 TCGA-22-0940-01 11 63671560 63671560 C - MARK2 Frame_Shift_Del p.N541Tfs*75 0.26 TCGA-22-0940-01 11 6423852 6423852 T A APBB1 Missense_Mutation p.Y403F 0.17 deleterious(0.01) possibly_damaging(0.594) TCGA-22-0940-01 11 85435999 85435999 C T SYTL2 Missense_Mutation p.V501I 0.17 tolerated(0.13) benign(0.05) TCGA-22-0940-01 11 88911587 88911587 T A TYR Missense_Mutation p.Y156N 0.17 deleterious(0.02) possibly_damaging(0.616) TCGA-22-0940-01 11 92623686 92623686 C - FAT3 Frame_Shift_Del p.P4393Qfs*8 0.24 TCGA-22-0940-01 12 101514312 101514312 G C ANO4 Missense_Mutation p.R827P 0.20 deleterious(0) probably_damaging(1) TCGA-22-0940-01 12 113334597 113334597 G T RPH3A 3'UTR 0.20 TCGA-22-0940-01 12 119568524 119568524 G A SRRM4 Missense_Mutation p.R219Q 0.25 tolerated_low_confidence(0.09) benign(0.006) TCGA-22-0940-01 12 122392055 122392055 C T WDR66 Silent p.S450S 0.14 TCGA-22-0940-01 12 124330250 124330250 G A DNAH10 Missense_Mutation p.E1704K 0.12 benign(0.002) TCGA-22-0940-01 12 131276499 131276499 A G STX2 3'UTR 0.17 TCGA-22-0940-01 12 133220069 133220069 T C POLE Silent p.S1456S 0.19 TCGA-22-0940-01 12 21918562 21918562 G A KCNJ8 3'UTR 0.07 TCGA-22-0940-01 12 40441978 40441978 C T SLC2A13 Silent p.A197A 0.16 TCGA-22-0940-01 12 43819349 43819349 C T ADAMTS20 Missense_Mutation p.D1418N 0.15 tolerated(0.13) benign(0.042) TCGA-22-0940-01 12 5153958 5153958 G C KCNA5 Missense_Mutation p.E215D 0.20 deleterious(0.05) benign(0.422) TCGA-22-0940-01 12 52962130 52962130 C G KRT74 Missense_Mutation p.G393A 0.17 deleterious(0) probably_damaging(0.989) TCGA-22-0940-01 12 55714439 55714439 C G OR6C1 Missense_Mutation p.P19R 0.14 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-22-0940-01 12 69742235 69742235 T A LYZ Missense_Mutation p.V16D 0.19 deleterious(0.02) benign(0.288) TCGA-22-0940-01 12 78400217 78400217 A C NAV3 Missense_Mutation p.Q300P 0.20 tolerated(0.98) benign(0) TCGA-22-0940-01 12 81647087 81647087 C G ACSS3 Nonsense_Mutation p.S574* 0.17 TCGA-22-0940-01 12 81688795 81688795 G T PPFIA2 Missense_Mutation p.A915E 0.20 deleterious(0.03) possibly_damaging(0.9) TCGA-22-0940-01 13 52513321 52513321 A T ATP7B Missense_Mutation p.C1189S 0.18 deleterious(0) probably_damaging(1) TCGA-22-0940-01 13 88328014 88328014 C A SLITRK5 Missense_Mutation p.A124D 0.17 deleterious(0) probably_damaging(0.993) TCGA-22-0940-01 14 102891422 102891422 G A TECPR2 Missense_Mutation p.G249R 0.31 deleterious(0) probably_damaging(1) TCGA-22-0940-01 14 23517514 23517514 G - CDH24 Frame_Shift_Del p.P712Rfs*129 0.33 TCGA-22-0940-01 14 39560727 39560727 C T SEC23A Missense_Mutation p.S186N 0.27 deleterious(0.01) possibly_damaging(0.72) TCGA-22-0940-01 14 51379823 51379823 T C PYGL Missense_Mutation p.D515G 0.24 deleterious(0) probably_damaging(0.934) TCGA-22-0940-01 14 65390845 65390845 G A CHURC1-FNTB Splice_Site p.X60_splice 0.21 TCGA-22-0940-01 15 20588443 20588443 A T HERC2P3 RNA 0.07 TCGA-22-0940-01 15 22473142 22473142 G A IGHV4OR15-8 Silent p.V43V 0.08 TCGA-22-0940-01 15 23889813 23889813 G C MAGEL2 Missense_Mutation p.A423G 0.33 deleterious(0.04) probably_damaging(0.997) TCGA-22-0940-01 15 48055275 48055275 G A SEMA6D Missense_Mutation p.A241T 0.11 deleterious(0) probably_damaging(1) TCGA-22-0940-01 15 48429139 48429139 G T SLC24A5 Missense_Mutation p.G284C 0.13 deleterious(0) possibly_damaging(0.447) TCGA-22-0940-01 15 48512946 48512946 G T SLC12A1 Missense_Mutation p.W179L 0.22 deleterious(0) probably_damaging(0.995) TCGA-22-0940-01 15 51830501 51830501 C A DMXL2 Missense_Mutation p.Q418H 0.20 tolerated(0.2) benign(0.004) TCGA-22-0940-01 15 53994345 53994345 G C WDR72 Missense_Mutation p.P519A 0.16 deleterious(0.01) probably_damaging(0.967) TCGA-22-0940-01 15 54307520 54307520 C A UNC13C Missense_Mutation p.A807D 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-22-0940-01 15 55783341 55783341 C G DYX1C1 Missense_Mutation p.A129P 0.15 deleterious(0) probably_damaging(0.921) TCGA-22-0940-01 15 62241707 62241707 G A VPS13C Missense_Mutation p.S1565F 0.19 deleterious(0.03) benign(0.008) TCGA-22-0940-01 15 76248305 76248305 A T NRG4 Missense_Mutation p.L100Q 0.15 tolerated(0.1) probably_damaging(0.943) TCGA-22-0940-01 15 84705637 84705637 G A ADAMTSL3 Missense_Mutation p.D1623N 0.15 tolerated(0.32) benign(0.001) TCGA-22-0940-01 16 12758653 12758653 A G CPPED1 3'UTR 0.19 TCGA-22-0940-01 16 28948958 28948958 G A CD19 Silent p.E462E 0.10 TCGA-22-0940-01 16 48210874 48210874 C G ABCC11 Missense_Mutation p.G1167R 0.16 tolerated(0.07) benign(0.214) TCGA-22-0940-01 16 58621700 58621700 G A CNOT1 Missense_Mutation p.P98L 0.15 tolerated(0.06) benign(0.405) TCGA-22-0940-01 16 68010102 68010102 G A DPEP3 Missense_Mutation p.T400I 0.09 tolerated(0.06) possibly_damaging(0.452) TCGA-22-0940-01 16 69201125 69201125 T C CIRH1A Intron 0.32 TCGA-22-0940-01 16 71606165 71606165 A G TAT Silent p.A210A 0.08 TCGA-22-0940-01 17 10403945 10403945 G A MYH1 Missense_Mutation p.S1288L 0.18 tolerated(0.07) benign(0.089) TCGA-22-0940-01 17 18152145 18152145 G - FLII Frame_Shift_Del p.Q663Rfs*4 0.21 TCGA-22-0940-01 17 30526477 30526477 C T RHOT1 Silent p.F336F 0.15 TCGA-22-0940-01 17 3628073 3628073 G T GSG2 Nonsense_Mutation p.E282* 0.21 TCGA-22-0940-01 17 39658801 39658801 C A KRT13 Missense_Mutation p.A357S 0.21 tolerated(0.34) probably_damaging(0.976) TCGA-22-0940-01 17 40865372 40865372 G A EZH1 Silent p.P353P 0.17 TCGA-22-0940-01 17 45377916 45377916 T C ITGB3 Silent p.R662R 0.21 TCGA-22-0940-01 17 4539145 4539145 A G ALOX15 Missense_Mutation p.L357P 0.23 deleterious(0.01) probably_damaging(1) TCGA-22-0940-01 17 4862977 4862977 C T SPAG7 Intron 0.11 TCGA-22-0940-01 17 61432663 61432669 ATGACTC TT TANC2 Frame_Shift_Del p.M758Lfs*26 0.11 TCGA-22-0940-01 17 61829183 61829183 C A CCDC47 Intron 0.36 TCGA-22-0940-01 17 61987086 61987086 G A CSHL1 Silent p.G218G 0.20 TCGA-22-0940-01 17 66880506 66880506 C A ABCA8 Missense_Mutation p.R1154L 0.13 tolerated(0.34) benign(0) TCGA-22-0940-01 17 73952008 73952008 C A ACOX1 Missense_Mutation p.A187S 0.17 deleterious(0.02) probably_damaging(0.924) TCGA-22-0940-01 17 7577120 7577120 C - TP53 Frame_Shift_Del p.R273Lfs*72 0.16 TCGA-22-0940-01 17 9631594 9631594 C T USP43 Missense_Mutation p.P887S 0.15 tolerated(0.75) benign(0.055) TCGA-22-0940-01 18 5443846 5443847 - T EPB41L3 Frame_Shift_Ins p.Q174Tfs*12 0.21 TCGA-22-0940-01 18 745764 745764 T G YES1 Missense_Mutation p.Y223S 0.15 deleterious(0) probably_damaging(0.999) TCGA-22-0940-01 19 10799267 10799267 G A ILF3 Missense_Mutation p.G826S 0.25 tolerated_low_confidence(0.19) unknown(0) TCGA-22-0940-01 19 18976574 18976574 C T UPF1 Missense_Mutation p.P1075L 0.28 tolerated(0.1) benign(0.006) TCGA-22-0940-01 19 22271862 22271862 G A ZNF257 Missense_Mutation p.G437D 0.13 deleterious(0.03) probably_damaging(0.977) TCGA-22-0940-01 19 43233501 43233501 A T PSG3 Silent p.P339P 0.34 TCGA-22-0940-01 19 44791426 44791426 C A ZNF235 Missense_Mutation p.S721I 0.21 deleterious(0) probably_damaging(0.984) TCGA-22-0940-01 19 46974200 46974200 T A PNMAL1 Silent p.P31P 0.37 TCGA-22-0940-01 19 48259019 48259019 G T GLTSCR2 Missense_Mutation p.Q412H 0.07 deleterious(0.02) possibly_damaging(0.852) TCGA-22-0940-01 19 52660391 52660391 C G ZNF836 Missense_Mutation p.R182T 0.14 tolerated(0.09) benign(0.034) TCGA-22-0940-01 19 53889515 53889515 G T ZNF525 3'Flank 0.46 TCGA-22-0940-01 19 9000517 9000517 G A MUC16 Silent p.N13489N 0.21 TCGA-22-0940-01 1 152280281 152280281 G A FLG Nonsense_Mutation p.R2361* 0.13 TCGA-22-0940-01 1 158815601 158815601 C T MNDA Silent p.V265V 0.30 TCGA-22-0940-01 1 161021112 161021112 C G ARHGAP30 Missense_Mutation p.G471A 0.36 tolerated(0.18) benign(0.101) TCGA-22-0940-01 1 175365842 175365842 G C TNR Missense_Mutation p.Q360E 0.39 tolerated(0.09) benign(0.085) TCGA-22-0940-01 1 197390373 197390373 C T CRB1 Missense_Mutation p.P472L 0.44 tolerated(0.09) benign(0.327) TCGA-22-0940-01 1 205128769 205128769 C G DSTYK Missense_Mutation p.G715A 0.10 deleterious(0) probably_damaging(0.962) TCGA-22-0940-01 1 211751577 211751577 G C SLC30A1 Silent p.V126V 0.18 TCGA-22-0940-01 1 228112018 228112018 T C WNT9A Missense_Mutation p.M146V 0.44 tolerated(0.06) benign(0.13) TCGA-22-0940-01 1 234565239 234565239 C A TARBP1 Missense_Mutation p.A932S 0.43 tolerated(0.19) probably_damaging(0.998) TCGA-22-0940-01 1 247902430 247902430 C A OR14K1 Missense_Mutation p.L172I 0.42 tolerated(0.78) benign(0.001) TCGA-22-0940-01 1 248685115 248685115 C A OR2G6 Missense_Mutation p.H56Q 0.36 tolerated(0.05) benign(0.094) TCGA-22-0940-01 1 54513079 54513079 A C TMEM59 Intron 0.24 TCGA-22-0940-01 1 86960062 86960062 A T CLCA1 Missense_Mutation p.S625C 0.23 deleterious(0) possibly_damaging(0.612) TCGA-22-0940-01 20 23804616 23804616 G - CST2 3'UTR 0.28 TCGA-22-0940-01 20 33999834 33999834 G A UQCC1 5'UTR 0.30 TCGA-22-0940-01 20 37400430 37400430 G A ACTR5 Missense_Mutation p.G599S 0.21 tolerated_low_confidence(1) unknown(0) TCGA-22-0940-01 20 39833352 39833352 G A ZHX3 Missense_Mutation p.R69W 0.21 deleterious(0) possibly_damaging(0.762) TCGA-22-0940-01 20 42198046 42198046 C A SGK2 Missense_Mutation p.R144S 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-22-0940-01 20 44682237 44682237 G A SLC12A5 Missense_Mutation p.M879I 0.21 tolerated(0.1) benign(0.083) TCGA-22-0940-01 20 57244390 57244390 G A STX16 Missense_Mutation p.R146Q 0.13 tolerated(0.53) benign(0.003) TCGA-22-0940-01 21 43166784 43166784 G T RIPK4 Missense_Mutation p.P274H 0.46 deleterious(0) probably_damaging(0.99) TCGA-22-0940-01 22 30780439 30780439 A T RNF215 Silent p.S211S 0.04 TCGA-22-0940-01 22 31536090 31536090 C T PLA2G3 Missense_Mutation p.G84D 0.08 tolerated(0.31) benign(0.034) TCGA-22-0940-01 22 38167700 38167700 A C TRIOBP Missense_Mutation p.K2298T 0.12 deleterious(0) possibly_damaging(0.731) TCGA-22-0940-01 22 45316292 45316292 C T PHF21B Missense_Mutation p.A67T 0.10 tolerated_low_confidence(0.21) probably_damaging(0.998) TCGA-22-0940-01 22 50719036 50719036 G C PLXNB2 Missense_Mutation p.L1353V 0.14 deleterious(0) probably_damaging(0.999) TCGA-22-0940-01 2 112922658 112922658 A G FBLN7 Missense_Mutation p.T106A 0.21 tolerated(0.5) benign(0.019) TCGA-22-0940-01 2 127819725 127819725 C T BIN1 Missense_Mutation p.G275R 0.07 deleterious(0.05) possibly_damaging(0.552) TCGA-22-0940-01 2 131356305 131356305 A G CFC1 Missense_Mutation p.W53R 0.08 tolerated(0.84) benign(0.032) TCGA-22-0940-01 2 132010578 132010578 G A POTEE Missense_Mutation p.A562T 0.09 deleterious_low_confidence(0) possibly_damaging(0.483) TCGA-22-0940-01 2 141116517 141116517 T A LRP1B Splice_Site p.X3711_splice 0.15 TCGA-22-0940-01 2 152315412 152315412 A G RIF1 Silent p.P981P 0.14 TCGA-22-0940-01 2 152315418 152315418 T C RIF1 Silent p.S983S 0.13 TCGA-22-0940-01 2 153591636 153591636 T C ARL6IP6 Missense_Mutation p.F195L 0.12 tolerated(0.06) probably_damaging(0.994) TCGA-22-0940-01 2 158272285 158272285 C GT CYTIP Frame_Shift_Ins p.R330Pfs*40 0.13 TCGA-22-0940-01 2 162881441 162881441 T A DPP4 Missense_Mutation p.Y299F 0.17 deleterious(0.02) probably_damaging(0.984) TCGA-22-0940-01 2 1653433 1653433 C A PXDN Missense_Mutation p.D707Y 0.17 deleterious(0) probably_damaging(0.977) TCGA-22-0940-01 2 165984219 165984219 A T SCN3A Silent p.I1105I 0.17 TCGA-22-0940-01 2 166859211 166859211 A G SCN1A Missense_Mutation p.L1352P 0.24 deleterious(0) probably_damaging(1) TCGA-22-0940-01 2 178969177 178969177 G A CYCTP RNA 0.23 TCGA-22-0940-01 2 179583627 179583627 G A TTN Silent p.V8100V 0.17 TCGA-22-0940-01 2 179616659 179616659 T C TTN Intron 0.19 TCGA-22-0940-01 2 198953622 198953622 C A PLCL1 Missense_Mutation p.P919Q 0.05 tolerated(0.05) benign(0.206) TCGA-22-0940-01 2 27147887 27147887 G T DPYSL5 Missense_Mutation p.V132L 0.14 tolerated(0.07) benign(0.016) TCGA-22-0940-01 2 39213003 39213003 C T SOS1 Missense_Mutation p.D1322N 0.15 tolerated_low_confidence(0.34) possibly_damaging(0.677) TCGA-22-0940-01 2 71043786 71043786 C G CLEC4F Missense_Mutation p.A243P 0.17 tolerated(0.09) possibly_damaging(0.848) TCGA-22-0940-01 2 90078054 90078054 C T IGKV3D-20 Silent p.L31L 0.17 TCGA-22-0940-01 2 98887294 98887294 T C VWA3B Missense_Mutation p.M998T 0.23 tolerated(0.67) benign(0.017) TCGA-22-0940-01 3 101086809 101086809 G A SENP7 Silent p.S281S 0.13 TCGA-22-0940-01 3 105243255 105243255 T C ALCAM Silent p.S99S 0.07 TCGA-22-0940-01 3 108076920 108076920 G C HHLA2 Missense_Mutation p.M305I 0.05 tolerated(0.08) benign(0.001) TCGA-22-0940-01 3 113344972 113344972 G A SIDT1 Silent p.E777E 0.15 TCGA-22-0940-01 3 132222055 132222055 C A DNAJC13 Intron 0.08 TCGA-22-0940-01 3 134369748 134369759 GCACGATCAGCA - KY In_Frame_Del p.L15_V18del 0.25 TCGA-22-0940-01 3 138724465 138724465 A G PRR23A Missense_Mutation p.F216L 0.17 tolerated(0.63) possibly_damaging(0.626) TCGA-22-0940-01 3 148614538 148614538 T A CPA3 3'UTR 0.05 TCGA-22-0940-01 3 157082296 157082296 T A VEPH1 Missense_Mutation p.K378I 0.16 deleterious(0.02) possibly_damaging(0.62) TCGA-22-0940-01 3 157817679 157817679 G A SHOX2 Silent p.N248N 0.19 TCGA-22-0940-01 3 161221471 161221471 A T OTOL1 Missense_Mutation p.Y392F 0.16 tolerated(0.13) possibly_damaging(0.886) TCGA-22-0940-01 3 164748513 164748513 C A SI Missense_Mutation p.C960F 0.13 deleterious(0) probably_damaging(0.977) TCGA-22-0940-01 3 194392995 194392995 G A LSG1 5'UTR 0.29 TCGA-22-0940-01 3 196807983 196807983 T A DLG1 Missense_Mutation p.E648V 0.06 deleterious(0) possibly_damaging(0.682) TCGA-22-0940-01 3 38936346 38936346 C A SCN11A Missense_Mutation p.R838L 0.29 deleterious(0) probably_damaging(1) TCGA-22-0940-01 3 58064475 58064475 G A FLNB Silent p.P191P 0.06 TCGA-22-0940-01 3 62423863 62423863 G C CADPS Missense_Mutation p.D1231E 0.24 tolerated(0.17) benign(0.273) TCGA-22-0940-01 3 8940678 8940678 C - RAD18 Frame_Shift_Del p.D408Tfs*40 0.15 TCGA-22-0940-01 4 104072432 104072432 C G CENPE Missense_Mutation p.E1114Q 0.13 possibly_damaging(0.849) TCGA-22-0940-01 4 113568541 113568541 A G LARP7 Missense_Mutation p.K285R 0.22 tolerated(0.45) benign(0.356) TCGA-22-0940-01 4 114278172 114278172 G A ANK2 Missense_Mutation p.D2800N 0.16 benign(0.007) TCGA-22-0940-01 4 155507579 155507579 C T FGA Nonsense_Mutation p.W334* 0.16 TCGA-22-0940-01 4 156751021 156751021 A T ASIC5 Missense_Mutation p.I502K 0.22 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-22-0940-01 4 17524575 17524575 C A CLRN2 Silent p.V114V 0.26 TCGA-22-0940-01 4 17524576 17524576 A G CLRN2 Missense_Mutation p.S115G 0.26 tolerated(0.6) probably_damaging(0.992) TCGA-22-0940-01 4 177046318 177046318 C T WDR17 Missense_Mutation p.P225L 0.20 deleterious(0) probably_damaging(0.999) TCGA-22-0940-01 4 177071737 177071737 T A WDR17 Missense_Mutation p.F790Y 0.22 tolerated(0.37) probably_damaging(0.983) TCGA-22-0940-01 4 178231006 178231006 T A NEIL3 5'UTR 0.27 TCGA-22-0940-01 4 183522189 183522189 G A TENM3 Silent p.L208L 0.19 TCGA-22-0940-01 4 2272420 2272420 C A ZFYVE28 3'UTR 0.24 TCGA-22-0940-01 4 2930180 2930180 C T ADD1 Missense_Mutation p.P746L 0.18 deleterious_low_confidence(0) unknown(0) TCGA-22-0940-01 4 41984926 41984926 G - DCAF4L1 Frame_Shift_Del p.G374Afs*120 0.29 TCGA-22-0940-01 4 42895554 42895554 G A GRXCR1 Missense_Mutation p.G91S 0.17 tolerated(0.57) benign(0.021) TCGA-22-0940-01 4 47605459 47605459 C A CORIN Missense_Mutation p.D923Y 0.23 deleterious(0) probably_damaging(1) TCGA-22-0940-01 4 47679987 47679987 T C CORIN Missense_Mutation p.K406R 0.22 tolerated(0.17) benign(0.042) TCGA-22-0940-01 4 55976862 55976862 G T KDR Silent p.I350I 0.13 TCGA-22-0940-01 4 62845322 62845322 G A LPHN3 Silent p.T881T 0.14 TCGA-22-0940-01 4 71472188 71472188 C A AMBN Missense_Mutation p.P362H 0.17 deleterious(0) probably_damaging(0.962) TCGA-22-0940-01 4 79204074 79204074 C T FRAS1 Missense_Mutation p.T403I 0.20 possibly_damaging(0.707) TCGA-22-0940-01 4 87735744 87735744 T C PTPN13 3'UTR 0.20 TCGA-22-0940-01 4 88583426 88583426 A G DMP1 Missense_Mutation p.R166G 0.18 deleterious(0.01) possibly_damaging(0.87) TCGA-22-0940-01 4 95201900 95201900 T C SMARCAD1 Missense_Mutation p.L861S 0.18 deleterious(0) probably_damaging(1) TCGA-22-0940-01 5 110428090 110428090 T C WDR36 Missense_Mutation p.L35P 0.10 tolerated_low_confidence(0.08) benign(0.004) TCGA-22-0940-01 5 128864370 128864370 G T ADAMTS19 Missense_Mutation p.R437M 0.15 deleterious(0) probably_damaging(0.994) TCGA-22-0940-01 5 140263407 140263407 C A PCDHA13 Nonsense_Mutation p.Y518* 0.19 TCGA-22-0940-01 5 140764084 140764084 C A PCDHGA7 Missense_Mutation p.P540T 0.07 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-22-0940-01 5 141387386 141387386 G A GNPDA1 Silent p.T68T 0.16 TCGA-22-0940-01 5 152870263 152870263 C A GRIA1 5'Flank 0.25 TCGA-22-0940-01 5 169535651 169535651 G T FOXI1 3'UTR 0.12 TCGA-22-0940-01 5 180046760 180046760 A T FLT4 Missense_Mutation p.L851H 0.17 deleterious(0) probably_damaging(1) TCGA-22-0940-01 5 21461976 21461976 G T GUSBP1 Splice_Site 0.12 TCGA-22-0940-01 5 31267627 31267627 C T CDH6 Missense_Mutation p.P16L 0.10 tolerated(0.65) benign(0.005) TCGA-22-0940-01 5 33984399 33984399 G C SLC45A2 Missense_Mutation p.S97C 0.48 tolerated(0.11) benign(0.032) TCGA-22-0940-01 5 3600194 3600194 G C IRX1 Missense_Mutation p.A378P 0.09 deleterious(0.04) benign(0.006) TCGA-22-0940-01 5 5182346 5182346 C T ADAMTS16 Nonsense_Mutation p.Q231* 0.34 TCGA-22-0940-01 5 54415678 54415678 A T CDC20B Missense_Mutation p.D470E 0.11 tolerated(0.35) benign(0.03) TCGA-22-0940-01 5 74325139 74325139 C G GCNT4 Missense_Mutation p.E242Q 0.16 tolerated(0.15) probably_damaging(0.982) TCGA-22-0940-01 5 78111915 78111915 C A ARSB Intron 0.23 TCGA-22-0940-01 5 79031998 79031998 G A CMYA5 Silent p.K2470K 0.17 TCGA-22-0940-01 5 9063024 9063024 C A SEMA5A Missense_Mutation p.Q831H 0.16 deleterious(0) probably_damaging(0.998) TCGA-22-0940-01 6 105233022 105233022 T C HACE1 Missense_Mutation p.Y416C 0.15 tolerated(0.14) benign(0.054) TCGA-22-0940-01 6 112402363 112402363 C A TUBE1 Missense_Mutation p.Q86H 0.10 tolerated(0.09) benign(0.03) TCGA-22-0940-01 6 116756897 116756897 G - DSE Frame_Shift_Del p.G424Dfs*61 0.16 TCGA-22-0940-01 6 117244318 117244318 C A RFX6 Missense_Mutation p.L496M 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-22-0940-01 6 132041435 132041435 A T ENPP3 Missense_Mutation p.I495F 0.14 deleterious(0.03) benign(0.018) TCGA-22-0940-01 6 46826790 46826790 G A GPR116 Silent p.G950G 0.26 TCGA-22-0940-01 6 72678698 72678698 G T RIMS1 Missense_Mutation p.R59S 0.15 tolerated_low_confidence(0.35) probably_damaging(0.942) TCGA-22-0940-01 7 100730976 100730976 G T TRIM56 Missense_Mutation p.C128F 0.14 deleterious(0) probably_damaging(0.997) TCGA-22-0940-01 7 101200754 101200754 C T COL26A1 Silent p.L423L 0.17 TCGA-22-0940-01 7 103243827 103243827 A G RELN Missense_Mutation p.V1086A 0.19 deleterious(0.01) benign(0.217) TCGA-22-0940-01 7 116166606 116166606 G A CAV1 Missense_Mutation p.E20K 0.14 tolerated_low_confidence(0.51) benign(0.003) TCGA-22-0940-01 7 117243744 117243744 A T CFTR Missense_Mutation p.H939L 0.19 tolerated(0.06) benign(0.018) TCGA-22-0940-01 7 123296054 123296054 T C LMOD2 Missense_Mutation p.Y13H 0.28 deleterious(0) probably_damaging(0.999) TCGA-22-0940-01 7 136699931 136699931 A C CHRM2 Missense_Mutation p.S107R 0.14 deleterious(0) probably_damaging(1) TCGA-22-0940-01 7 137075850 137075850 T A DGKI 3'UTR 0.28 TCGA-22-0940-01 7 149421829 149421829 C G KRBA1 Missense_Mutation p.Q339E 0.27 deleterious(0.05) benign(0.009) TCGA-22-0940-01 7 20685393 20685393 G T ABCB5 Missense_Mutation p.L231F 0.36 tolerated(1) benign(0.212) TCGA-22-0940-01 7 34091484 34091484 G A BMPER Missense_Mutation p.V230M 0.35 deleterious(0) probably_damaging(0.944) TCGA-22-0940-01 7 6196522 6196522 G A USP42 Missense_Mutation p.R1260K 0.49 tolerated(1) benign(0) TCGA-22-0940-01 7 71177047 71177047 G T WBSCR17 Silent p.V571V 0.17 TCGA-22-0940-01 7 92838015 92838015 G A HEPACAM2 Missense_Mutation p.P297L 0.22 deleterious(0.02) probably_damaging(0.991) TCGA-22-0940-01 7 95223026 95223026 T A PDK4 Missense_Mutation p.Q110L 0.15 tolerated(0.26) benign(0.07) TCGA-22-0940-01 8 113988352 113988352 G A CSMD3 Silent p.T352T 0.19 TCGA-22-0940-01 8 126079901 126079901 C T KIAA0196 Missense_Mutation p.R404Q 0.20 tolerated(0.33) benign(0.052) TCGA-22-0940-01 8 133141419 133141419 G A KCNQ3 3'UTR 0.21 TCGA-22-0940-01 8 139833639 139833639 C A COL22A1 Missense_Mutation p.D329Y 0.20 unknown(0) TCGA-22-0940-01 8 145140568 145140568 T C GPAA1 Missense_Mutation p.L515P 0.16 deleterious(0) possibly_damaging(0.903) TCGA-22-0940-01 8 19818514 19818514 C A LPL Nonsense_Mutation p.Y414* 0.15 TCGA-22-0940-01 8 3257004 3257004 G T CSMD1 Missense_Mutation p.P772T 0.14 probably_damaging(1) TCGA-22-0940-01 8 35425698 35425698 G T UNC5D Missense_Mutation p.Q135H 0.19 deleterious(0.01) possibly_damaging(0.784) TCGA-22-0940-01 8 38831728 38831728 G A HTRA4 5'UTR 0.22 TCGA-22-0940-01 8 59851903 59851903 C A TOX Missense_Mutation p.M123I 0.17 deleterious(0.01) benign(0.002) TCGA-22-0940-01 8 62212783 62212783 C T CLVS1 Nonsense_Mutation p.R133* 0.15 TCGA-22-0940-01 8 97263290 97263290 T A MTERFD1 Missense_Mutation p.E174V 0.12 deleterious(0.01) benign(0.087) TCGA-22-0940-01 8 97605801 97605801 G T SDC2 Missense_Mutation p.A52S 0.22 tolerated(1) benign(0.065) TCGA-22-0940-01 9 114090487 114090487 G T OR2K2 Missense_Mutation p.A76D 0.18 deleterious(0) benign(0.339) TCGA-22-0940-01 9 122004403 122004403 G T BRINP1 Silent p.L167L 0.22 TCGA-22-0940-01 9 130073914 130073914 G A GARNL3 Splice_Site p.X74_splice 0.21 TCGA-22-0940-01 9 130915390 130915390 G C LCN2 Missense_Mutation p.D197H 0.20 deleterious(0) possibly_damaging(0.85) TCGA-22-0940-01 9 131390220 131390220 G T SPTAN1 Missense_Mutation p.G2236W 0.25 deleterious(0) benign(0.015) TCGA-22-0940-01 9 21971036 21971036 C A CDKN2A Missense_Mutation p.D108Y 0.45 deleterious(0) probably_damaging(1) TCGA-22-0940-01 9 32436269 32436269 C A ACO1 Missense_Mutation p.N707K 0.04 deleterious(0) probably_damaging(1) TCGA-22-0940-01 9 368212 368212 C T DOCK8 Intron 0.07 TCGA-22-0940-01 9 43625201 43625201 G A SPATA31A6 Silent p.N1162N 0.23 TCGA-22-0940-01 9 43627414 43627414 C T SPATA31A6 Missense_Mutation p.E425K 0.17 deleterious(0) probably_damaging(0.958) TCGA-22-0940-01 9 88842933 88842933 A T C9orf153 Missense_Mutation p.Y27N 0.15 deleterious(0) probably_damaging(0.934) TCGA-22-0940-01 9 93375872 93375872 G A DIRAS2 Missense_Mutation p.H80Y 0.17 deleterious(0) benign(0.223) TCGA-22-0940-01 9 98728983 98728983 A G ERCC6L2 Missense_Mutation p.K707R 0.20 tolerated(1) benign(0.001) TCGA-22-0940-01 X 100349831 100349831 G A TMEM35 Silent p.L130L 0.29 TCGA-22-0940-01 X 100349850 100349850 G A TMEM35 Missense_Mutation p.D137N 0.23 tolerated(0.12) benign(0.024) TCGA-22-0940-01 X 100349862 100349862 G A TMEM35 Missense_Mutation p.E141K 0.22 tolerated(0.17) benign(0.004) TCGA-22-0940-01 X 100349881 100349881 G T TMEM35 Missense_Mutation p.G147V 0.18 tolerated(0.33) benign(0) TCGA-22-0940-01 X 100349998 100350001 AGGA - TMEM35 3'UTR 0.25 TCGA-22-0940-01 X 103219197 103219197 T C TMSB15B Splice_Site p.X34_splice 0.39 TCGA-22-0940-01 X 105153145 105153145 G C NRK Missense_Mutation p.Q505H 0.25 deleterious(0) possibly_damaging(0.874) TCGA-22-0940-01 X 105179168 105179168 C A NRK Missense_Mutation p.A1170D 0.20 deleterious(0.03) benign(0.286) TCGA-22-0940-01 X 105179169 105179169 T A NRK Silent p.A1170A 0.20 TCGA-22-0940-01 X 137749941 137749941 C A FGF13 Intron 0.25 TCGA-22-0940-01 X 140995207 140995207 C A MAGEC1 Missense_Mutation p.Q673K 0.27 deleterious_low_confidence(0.01) benign(0.042) TCGA-22-0940-01 X 140995594 140995594 C A MAGEC1 Missense_Mutation p.P802T 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.641) TCGA-22-0940-01 X 26212886 26212886 G A MAGEB6 Nonsense_Mutation p.W308* 0.39 TCGA-22-0940-01 X 41206603 41206603 G A DDX3X Missense_Mutation p.R603Q 0.46 deleterious(0) unknown(0) TCGA-22-0940-01 X 73062931 73062931 G C XIST RNA 0.26 TCGA-22-0940-01 X 78618487 78618487 G T ITM2A Silent p.P131P 0.33 TCGA-22-0940-01 X 85994867 85994867 C A DACH2 Missense_Mutation p.H408N 0.28 tolerated(0.24) benign(0.001) TCGA-22-0944-01 10 134915812 134915812 A G GPR123 Intron 0.50 TCGA-22-0944-01 10 1569074 1569074 C A ADARB2 Intron 0.09 TCGA-22-0944-01 10 26310568 26310568 A C MYO3A Missense_Mutation p.K241T 0.29 deleterious(0) probably_damaging(0.997) TCGA-22-0944-01 10 35854998 35854998 A G CCNY Missense_Mutation p.N265S 0.23 deleterious(0.03) probably_damaging(0.998) TCGA-22-0944-01 10 5803317 5803317 G C FAM208B Missense_Mutation p.E2353Q 0.03 deleterious(0) probably_damaging(0.941) TCGA-22-0944-01 10 88672053 88672053 A T BMPR1A Missense_Mutation p.D196V 0.38 tolerated(0.07) benign(0.007) TCGA-22-0944-01 10 95718927 95718927 C T PIPSL RNA 0.10 TCGA-22-0944-01 11 121039502 121039502 G A TECTA Missense_Mutation p.R1956Q 0.25 tolerated(0.08) probably_damaging(0.989) TCGA-22-0944-01 11 128680432 128680432 A T FLI1 Missense_Mutation p.E303V 0.32 deleterious(0) probably_damaging(0.999) TCGA-22-0944-01 11 36522776 36522776 G A TRAF6 Missense_Mutation p.S97L 0.27 deleterious(0.02) probably_damaging(0.998) TCGA-22-0944-01 11 47861745 47861745 T G NUP160 Intron 0.40 TCGA-22-0944-01 11 48164469 48164469 A G PTPRJ Splice_Site p.X815_splice 0.33 TCGA-22-0944-01 11 6191414 6191414 A T OR52B2 Missense_Mutation p.I48K 0.31 deleterious(0) benign(0.157) TCGA-22-0944-01 11 6265463 6265463 C A CNGA4 Missense_Mutation p.L518M 0.25 deleterious(0.04) probably_damaging(0.991) TCGA-22-0944-01 11 66472844 66472844 C A SPTBN2 Missense_Mutation p.A635S 0.22 tolerated(0.17) benign(0.06) TCGA-22-0944-01 11 67177085 67177085 G T TBC1D10C Nonsense_Mutation p.E401* 0.64 TCGA-22-0944-01 11 6789694 6789694 G T OR2AG2 Missense_Mutation p.H165Q 0.36 tolerated(0.43) benign(0.034) TCGA-22-0944-01 11 82549495 82549495 C A PRCP Missense_Mutation p.R424M 0.26 deleterious(0) probably_damaging(0.964) TCGA-22-0944-01 11 92534971 92534971 G T FAT3 Missense_Mutation p.G2931V 0.25 probably_damaging(0.961) TCGA-22-0944-01 12 101750711 101750711 C T UTP20 Silent p.L1848L 0.18 TCGA-22-0944-01 12 113531399 113531399 C G DTX1 Silent p.A353A 0.48 TCGA-22-0944-01 12 12247859 12247859 G A BCL2L14 Missense_Mutation p.G314R 0.32 deleterious(0) probably_damaging(1) TCGA-22-0944-01 12 133419614 133419614 C T CHFR Silent p.V645V 0.16 TCGA-22-0944-01 12 14952603 14952603 C G WBP11 Missense_Mutation p.Q52H 0.17 deleterious(0) unknown(0) TCGA-22-0944-01 12 28123041 28123041 G C PTHLH 5'UTR 0.29 TCGA-22-0944-01 12 29617471 29617471 A G OVCH1 Silent p.C698C 0.36 TCGA-22-0944-01 12 32871652 32871652 G A DNM1L Missense_Mutation p.G232E 0.28 deleterious(0) probably_damaging(0.999) TCGA-22-0944-01 12 78400573 78400573 G T NAV3 Nonsense_Mutation p.E419* 0.38 TCGA-22-0944-01 13 70681657 70681657 T G KLHL1 Missense_Mutation p.S59R 0.57 deleterious_low_confidence(0.02) benign(0.186) TCGA-22-0944-01 14 103941438 103941438 G T MARK3 Missense_Mutation p.S458I 0.62 deleterious(0.03) benign(0) TCGA-22-0944-01 14 106967307 106967307 C T IGHV1-46 Silent p.K31K 0.04 TCGA-22-0944-01 14 21502457 21502457 T A RNASE13 Splice_Site 0.51 TCGA-22-0944-01 14 30133053 30133053 T C PRKD1 Missense_Mutation p.N183S 0.61 deleterious(0.02) probably_damaging(0.941) TCGA-22-0944-01 14 42356395 42356395 G A LRFN5 Silent p.G189G 0.52 TCGA-22-0944-01 14 47311017 47311017 T A MDGA2 3'UTR 0.67 TCGA-22-0944-01 14 47311018 47311018 G A MDGA2 3'UTR 0.67 TCGA-22-0944-01 14 72138033 72138033 A T SIPA1L1 Missense_Mutation p.E818V 0.20 deleterious(0) probably_damaging(0.974) TCGA-22-0944-01 14 91366504 91366504 A G RPS6KA5 Missense_Mutation p.C443R 0.03 deleterious(0) probably_damaging(1) TCGA-22-0944-01 15 20488800 20488800 A T CHEK2P2 RNA 0.08 TCGA-22-0944-01 15 22369231 22369231 C A OR4M2 Missense_Mutation p.A219D 0.10 deleterious(0.01) possibly_damaging(0.487) TCGA-22-0944-01 15 25475996 25475996 G A SNORD115-33 RNA 0.10 TCGA-22-0944-01 15 45007661 45007661 G A B2M Silent p.E36E 0.10 TCGA-22-0944-01 15 91492556 91492564 GCTTCGTGC - UNC45A In_Frame_Del p.S630_V632del 0.19 TCGA-22-0944-01 16 3614528 3614528 G T NLRC3 Missense_Mutation p.P184Q 0.21 tolerated(0.25) possibly_damaging(0.642) TCGA-22-0944-01 16 55719106 55719106 G T SLC6A2 Silent p.L232L 0.23 TCGA-22-0944-01 16 66946299 66946299 G T CDH16 Missense_Mutation p.P465H 0.66 deleterious(0.02) probably_damaging(0.972) TCGA-22-0944-01 16 71319357 71319357 T G CMTR2 Missense_Mutation p.H156P 0.61 deleterious(0) probably_damaging(1) TCGA-22-0944-01 16 71795457 71795457 T C AP1G1 Missense_Mutation p.N314S 0.31 deleterious(0) probably_damaging(0.997) TCGA-22-0944-01 16 76501333 76501333 G A CNTNAP4 Missense_Mutation p.G450D 0.07 tolerated(0.72) benign(0.001) TCGA-22-0944-01 16 76532475 76532475 C A CNTNAP4 Missense_Mutation p.T677N 0.40 deleterious(0) possibly_damaging(0.891) TCGA-22-0944-01 16 89789138 89789138 C G ZNF276 Silent p.V135V 0.28 TCGA-22-0944-01 16 89838110 89838110 C A FANCA Silent p.P709P 0.35 TCGA-22-0944-01 17 27208211 27208211 T A FLOT2 Missense_Mutation p.Q366L 0.23 tolerated(0.15) benign(0.002) TCGA-22-0944-01 17 37619089 37619089 C T CDK12 Silent p.T255T 0.92 TCGA-22-0944-01 17 37792130 37792130 G A PPP1R1B 3'UTR 0.96 TCGA-22-0944-01 17 61907223 61907223 C T PSMC5 Missense_Mutation p.R60W 0.27 deleterious(0) possibly_damaging(0.88) TCGA-22-0944-01 17 7577580 7577580 T C TP53 Missense_Mutation p.Y234C 0.47 deleterious(0) probably_damaging(0.992) TCGA-22-0944-01 18 31599521 31599521 G A NOL4 Missense_Mutation p.H273Y 0.27 tolerated(1) benign(0.351) TCGA-22-0944-01 18 42530539 42530539 G T SETBP1 Missense_Mutation p.D412Y 0.27 tolerated(0.14) probably_damaging(0.974) TCGA-22-0944-01 18 44284606 44284606 C A ST8SIA5 Silent p.G51G 0.30 TCGA-22-0944-01 18 59221438 59221438 T A CDH20 Missense_Mutation p.I639N 0.38 deleterious(0.02) possibly_damaging(0.635) TCGA-22-0944-01 18 8113488 8113488 T C PTPRM Missense_Mutation p.Y621H 0.16 deleterious(0.01) benign(0.248) TCGA-22-0944-01 19 17476990 17476990 G A PLVAP Silent p.N128N 0.15 TCGA-22-0944-01 19 18507431 18507431 C T LRRC25 Missense_Mutation p.D115N 0.33 deleterious(0.05) possibly_damaging(0.897) TCGA-22-0944-01 19 3816683 3816683 G - ZFR2 Frame_Shift_Del p.R698Gfs*6 0.34 TCGA-22-0944-01 19 49422520 49422520 G - NUCB1 Frame_Shift_Del p.D328Tfs*20 0.40 TCGA-22-0944-01 19 53668050 53668050 T G ZNF665 Missense_Mutation p.T565P 0.22 deleterious(0.01) probably_damaging(0.996) TCGA-22-0944-01 19 54745537 54745537 C T LILRA6 Silent p.R191R 0.49 TCGA-22-0944-01 1 109394998 109394998 T A AKNAD1 Missense_Mutation p.I97F 0.45 deleterious(0) possibly_damaging(0.723) TCGA-22-0944-01 1 110466216 110466216 C T CSF1 Missense_Mutation p.P325S 0.07 tolerated(0.57) benign(0.054) TCGA-22-0944-01 1 116940528 116940528 A T ATP1A1 Silent p.V664V 0.51 TCGA-22-0944-01 1 145533550 145533551 - G ITGA10 Frame_Shift_Ins p.E480Gfs*10 0.24 TCGA-22-0944-01 1 152129183 152129183 T A RPTN Missense_Mutation p.N131I 0.11 deleterious(0) benign(0.124) TCGA-22-0944-01 1 155184070 155184070 T G MTX1 3'Flank 0.23 TCGA-22-0944-01 1 169366527 169366527 C T CCDC181 Missense_Mutation p.E439K 0.19 deleterious(0) probably_damaging(0.934) TCGA-22-0944-01 1 1961728 1961728 G T GABRD 3'UTR 0.45 TCGA-22-0944-01 1 205814506 205814506 G A PM20D1 Missense_Mutation p.R146C 0.30 tolerated(0.08) possibly_damaging(0.892) TCGA-22-0944-01 1 206619426 206619426 C T SRGAP2 Missense_Mutation p.S541L 0.23 deleterious(0) probably_damaging(0.953) TCGA-22-0944-01 1 211654707 211654707 G A RD3 Silent p.S17S 0.27 TCGA-22-0944-01 1 214454741 214454741 G T SMYD2 Silent p.R48R 0.31 TCGA-22-0944-01 1 223285747 223285747 A C TLR5 Nonsense_Mutation p.Y209* 0.09 TCGA-22-0944-01 1 237947700 237947700 G C RYR2 Missense_Mutation p.G4230R 0.26 benign(0.002) TCGA-22-0944-01 1 240370312 240370312 C A FMN2 Silent p.R734R 0.06 TCGA-22-0944-01 1 42048314 42048314 T A HIVEP3 Nonsense_Mutation p.K719* 0.56 TCGA-22-0944-01 1 44019608 44019608 C G PTPRF Silent p.L125L 0.26 TCGA-22-0944-01 1 45805976 45805976 G C TOE1 Missense_Mutation p.G18R 0.36 tolerated_low_confidence(0.06) benign(0.257) TCGA-22-0944-01 1 84417913 84417913 G T TTLL7 5'UTR 0.40 TCGA-22-0944-01 1 89658722 89658722 C G GBP4 Missense_Mutation p.E179Q 0.03 tolerated(0.14) benign(0.019) TCGA-22-0944-01 20 31024614 31024614 G A ASXL1 Missense_Mutation p.V1367I 0.23 tolerated(1) benign(0) TCGA-22-0944-01 20 58519998 58519998 G A FAM217B Missense_Mutation p.D334N 0.35 tolerated(0.14) benign(0.273) TCGA-22-0944-01 21 11098858 11098858 C A BAGE2 RNA 0.14 TCGA-22-0944-01 21 34793789 34793789 C T IFNGR2 Missense_Mutation p.T70I 0.34 tolerated(0.07) benign(0.232) TCGA-22-0944-01 21 37747568 37747568 C A MORC3 Missense_Mutation p.Q932K 0.42 deleterious(0.02) possibly_damaging(0.887) TCGA-22-0944-01 22 18022266 18022266 C T CECR2 Nonsense_Mutation p.R791* 0.18 TCGA-22-0944-01 22 23263607 23263607 G T IGLJ7 Silent p.%3D 0.33 TCGA-22-0944-01 2 109527268 109527268 G T EDAR Missense_Mutation p.Q232K 0.06 tolerated(0.48) benign(0.013) TCGA-22-0944-01 2 125175047 125175047 A C CNTNAP5 Missense_Mutation p.S137R 0.12 deleterious(0) probably_damaging(0.979) TCGA-22-0944-01 2 132238108 132238108 C T TUBA3D Missense_Mutation p.A281V 0.55 deleterious_low_confidence(0.04) benign(0.36) TCGA-22-0944-01 2 141283440 141283440 C A LRP1B Missense_Mutation p.D2667Y 0.50 probably_damaging(0.961) TCGA-22-0944-01 2 183104928 183104928 G T PDE1A Silent p.R103R 0.36 TCGA-22-0944-01 2 186678704 186678704 A T FSIP2 Missense_Mutation p.M6843L 0.29 benign(0.18) TCGA-22-0944-01 2 206480528 206480528 A G PARD3B Silent p.A1141A 0.48 TCGA-22-0944-01 2 44161358 44161358 T A LRPPRC Missense_Mutation p.N903Y 0.38 deleterious(0) possibly_damaging(0.905) TCGA-22-0944-01 2 50464081 50464081 C G NRXN1 Missense_Mutation p.G1171A 0.06 deleterious(0) benign(0.18) TCGA-22-0944-01 2 63272447 63272447 C T EHBP1 Intron 0.50 TCGA-22-0944-01 2 71886094 71886094 C G DYSF Silent p.P1614P 0.12 TCGA-22-0944-01 2 72786643 72786643 C A EXOC6B Missense_Mutation p.G285V 0.05 deleterious(0.03) probably_damaging(0.911) TCGA-22-0944-01 2 77746266 77746266 G A LRRTM4 Silent p.S243S 0.12 TCGA-22-0944-01 3 119120970 119120970 G C ARHGAP31 Silent p.S457S 0.33 TCGA-22-0944-01 3 147114021 147114021 G T ZIC4 Missense_Mutation p.N152K 0.29 deleterious(0) probably_damaging(0.954) TCGA-22-0944-01 3 170185011 170185011 G T SLC7A14 Missense_Mutation p.S716R 0.09 tolerated(0.46) benign(0.015) TCGA-22-0944-01 3 18436276 18436276 G C SATB1 Missense_Mutation p.S295C 0.43 tolerated(0.07) possibly_damaging(0.598) TCGA-22-0944-01 3 195306346 195306346 G A APOD 5'UTR 0.69 TCGA-22-0944-01 3 38415993 38415993 G T XYLB Silent p.A296A 0.50 TCGA-22-0944-01 3 52562310 52562310 C T NT5DC2 Silent p.Q220Q 0.40 TCGA-22-0944-01 3 54157519 54157519 C T CACNA2D3 Intron 0.07 TCGA-22-0944-01 3 65342499 65342499 C T MAGI1 Missense_Mutation p.A1315T 0.05 tolerated(0.6) benign(0.08) TCGA-22-0944-01 3 65367554 65367554 G A MAGI1 Missense_Mutation p.A900V 0.18 deleterious(0.01) benign(0.396) TCGA-22-0944-01 4 183594205 183594205 G A TENM3 Missense_Mutation p.E387K 0.24 deleterious(0.01) benign(0.292) TCGA-22-0944-01 4 4304558 4304558 G A ZBTB49 Missense_Mutation p.G332D 0.50 tolerated(0.51) benign(0.003) TCGA-22-0944-01 4 436622 436622 T C ZNF721 Missense_Mutation p.Y545C 0.48 tolerated(0.06) possibly_damaging(0.619) TCGA-22-0944-01 5 140710522 140710522 G A PCDHGA1 Missense_Mutation p.D91N 0.03 deleterious_low_confidence(0) possibly_damaging(0.764) TCGA-22-0944-01 5 153078581 153078581 G A GRIA1 Missense_Mutation p.R477Q 0.36 tolerated(0.08) probably_damaging(0.999) TCGA-22-0944-01 5 31305407 31305407 G T CDH6 Missense_Mutation p.D376Y 0.27 deleterious(0) possibly_damaging(0.754) TCGA-22-0944-01 5 33549443 33549443 A T ADAMTS12 Missense_Mutation p.C1391S 0.17 deleterious(0.01) probably_damaging(0.986) TCGA-22-0944-01 5 80548572 80548572 G A CKMT2 Missense_Mutation p.A71T 0.47 tolerated(0.17) benign(0.015) TCGA-22-0944-01 5 80548574 80548574 C A CKMT2 Silent p.A71A 0.45 TCGA-22-0944-01 6 11185599 11185599 C T NEDD9 Silent p.V767V 0.03 TCGA-22-0944-01 6 114181255 114181255 A T MARCKS Missense_Mutation p.S167C 0.34 deleterious(0) possibly_damaging(0.472) TCGA-22-0944-01 6 119500836 119500836 G T MAN1A1 3'UTR 0.16 TCGA-22-0944-01 6 146480556 146480556 C G GRM1 Missense_Mutation p.S258C 0.14 deleterious(0) probably_damaging(0.954) TCGA-22-0944-01 6 155154636 155154636 T G SCAF8 3'UTR 0.57 TCGA-22-0944-01 6 31379003 31379003 C G MICA Silent p.T160T 0.16 TCGA-22-0944-01 7 110763554 110763554 T G LRRN3 Silent p.S242S 0.36 TCGA-22-0944-01 7 117232171 117232171 C T CFTR Silent p.F650F 0.06 TCGA-22-0944-01 7 128452070 128452070 G A CCDC136 Missense_Mutation p.G749S 0.28 deleterious_low_confidence(0.03) benign(0.056) TCGA-22-0944-01 7 128494225 128494225 C T FLNC Missense_Mutation p.R2228W 0.22 deleterious(0.01) benign(0.095) TCGA-22-0944-01 7 129040166 129040166 G A AHCYL2 Missense_Mutation p.D287N 0.33 deleterious(0) benign(0.307) TCGA-22-0944-01 7 143175723 143175723 A G TAS2R41 Missense_Mutation p.D253G 0.28 tolerated(0.18) benign(0.192) TCGA-22-0944-01 7 150174631 150174631 T A GIMAP8 Silent p.L587L 0.31 TCGA-22-0944-01 7 42005902 42005902 G A GLI3 Silent p.P923P 0.28 TCGA-22-0944-01 7 47408322 47408322 C G TNS3 Missense_Mutation p.V641L 0.22 tolerated(0.14) benign(0.024) TCGA-22-0944-01 7 72892464 72892464 T C BAZ1B Missense_Mutation p.M443V 0.25 deleterious(0.02) benign(0.122) TCGA-22-0944-01 8 11189016 11189016 G C SLC35G5 Missense_Mutation p.R134P 0.28 tolerated(0.17) possibly_damaging(0.687) TCGA-22-0944-01 8 11189017 11189017 C T SLC35G5 Silent p.R134R 0.28 TCGA-22-0944-01 8 113299462 113299462 C A CSMD3 Silent p.G3054G 0.30 TCGA-22-0944-01 8 113395831 113395831 C A CSMD3 Missense_Mutation p.G1999V 0.25 tolerated(0.12) benign(0.002) TCGA-22-0944-01 8 142221506 142221506 C T SLC45A4 3'UTR 0.13 TCGA-22-0944-01 8 1728668 1728668 G T CLN8 Missense_Mutation p.A266S 0.30 tolerated(0.86) benign(0.387) TCGA-22-0944-01 8 25126369 25126369 A G DOCK5 Missense_Mutation p.R46G 0.19 tolerated(0.06) benign(0.199) TCGA-22-0944-01 8 55540872 55540872 A T RP1 Missense_Mutation p.D1477V 0.28 tolerated(0.11) benign(0.011) TCGA-22-0944-01 8 62577920 62577920 C A ASPH Intron 0.25 TCGA-22-0944-01 8 72935258 72935258 A T TRPA1 Missense_Mutation p.D1081E 0.29 tolerated(1) benign(0) TCGA-22-0944-01 8 88885659 88885659 G - DCAF4L2 Frame_Shift_Del p.Q181Rfs*12 0.27 TCGA-22-0944-01 9 101778305 101778305 C G COL15A1 Silent p.P517P 0.29 TCGA-22-0944-01 9 125377461 125377461 C A OR1Q1 Missense_Mutation p.H149N 0.18 deleterious(0.01) benign(0.326) TCGA-22-0944-01 9 125487159 125487159 T C OR1L4 Silent p.D297D 0.40 TCGA-22-0944-01 9 17795590 17795590 C A SH3GL2 Missense_Mutation p.P303H 0.53 deleterious(0) probably_damaging(0.989) TCGA-22-0944-01 9 37801401 37801401 G T DCAF10 Missense_Mutation p.G180W 0.32 deleterious(0) probably_damaging(0.926) TCGA-22-0944-01 9 98683538 98683538 C T ERCC6L2 Nonsense_Mutation p.Q425* 0.05 TCGA-22-0944-01 X 101911509 101911509 G T GPRASP1 Nonsense_Mutation p.G890* 0.63 TCGA-22-0944-01 X 106486632 106486632 T C PIH1D3 3'UTR 0.80 TCGA-22-0944-01 X 140995582 140995582 C T MAGEC1 Missense_Mutation p.P798S 0.58 deleterious_low_confidence(0.04) possibly_damaging(0.641) TCGA-22-0944-01 X 140995591 140995591 C A MAGEC1 Missense_Mutation p.P801T 0.58 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-22-0944-01 X 150840052 150840052 C G PASD1 Missense_Mutation p.P413R 0.04 deleterious(0) possibly_damaging(0.864) TCGA-22-0944-01 X 150911761 150911761 G T CNGA2 Silent p.R262R 0.67 TCGA-22-0944-01 X 1522078 1522078 G C ASMTL 3'UTR 0.50 TCGA-22-0944-01 X 153136336 153136336 G A L1CAM Silent p.S201S 0.71 TCGA-22-0944-01 X 48932917 48932917 C T WDR45 Missense_Mutation p.G285E 0.72 deleterious(0.01) possibly_damaging(0.798) TCGA-22-1000-01 10 104629856 104629856 G C AS3MT Missense_Mutation p.V20L 0.05 tolerated(0.36) benign(0.018) TCGA-22-1000-01 10 25314035 25314035 T G THNSL1 Missense_Mutation p.I628S 0.11 deleterious(0) probably_damaging(0.999) TCGA-22-1000-01 10 47086874 47086874 T A NPY4R Missense_Mutation p.S31T 0.04 tolerated(0.52) benign(0.005) TCGA-22-1000-01 10 64573375 64573375 C T EGR2 Silent p.P341P 0.04 TCGA-22-1000-01 11 100933265 100933265 C G PGR Missense_Mutation p.D709H 0.08 deleterious(0) possibly_damaging(0.86) TCGA-22-1000-01 11 105623777 105623777 G A GRIA4 Silent p.L106L 0.09 TCGA-22-1000-01 11 16816188 16816188 T A PLEKHA7 Silent p.P864P 0.09 TCGA-22-1000-01 11 22844616 22844616 C A SVIP 3'UTR 0.07 TCGA-22-1000-01 11 25098927 25098927 C G LUZP2 Missense_Mutation p.T304S 0.08 tolerated_low_confidence(0.15) benign(0.392) TCGA-22-1000-01 11 4945420 4945420 G A OR51G1 Silent p.V50V 0.10 TCGA-22-1000-01 11 55135613 55135613 C A OR4A15 Missense_Mutation p.S85Y 0.06 deleterious_low_confidence(0) benign(0.396) TCGA-22-1000-01 11 55563501 55563501 G T OR5D14 Missense_Mutation p.G157V 0.09 deleterious(0.01) benign(0.014) TCGA-22-1000-01 11 67434417 67434417 A T ALDH3B2 5'UTR 0.05 TCGA-22-1000-01 11 74547498 74547498 C T RNF169 Missense_Mutation p.S617F 0.11 deleterious(0.01) possibly_damaging(0.646) TCGA-22-1000-01 11 89073335 89073335 C G NOX4 Missense_Mutation p.D448H 0.06 deleterious(0.03) possibly_damaging(0.756) TCGA-22-1000-01 11 92916055 92916055 T C SLC36A4 Silent p.G92G 0.06 TCGA-22-1000-01 12 101679527 101679527 G A UTP20 Missense_Mutation p.G65E 0.06 tolerated(0.54) benign(0.356) TCGA-22-1000-01 12 120208621 120208621 G A CIT Nonsense_Mutation p.Q726* 0.11 TCGA-22-1000-01 12 15131001 15131001 C T PDE6H Missense_Mutation p.P19S 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-22-1000-01 12 28458625 28458625 G T CCDC91 Silent p.L51L 0.09 TCGA-22-1000-01 12 50190041 50190041 C G NCKAP5L Missense_Mutation p.Q534H 0.09 tolerated(0.19) possibly_damaging(0.849) TCGA-22-1000-01 12 52946583 52946583 G C KRT71 Missense_Mutation p.C93W 0.10 deleterious(0.02) possibly_damaging(0.687) TCGA-22-1000-01 12 7882223 7882223 G T CLEC4C Nonsense_Mutation p.S204* 0.09 TCGA-22-1000-01 12 81545804 81545804 G T ACSS3 Missense_Mutation p.G343C 0.04 deleterious(0) probably_damaging(0.997) TCGA-22-1000-01 12 81568607 81568607 G A ACSS3 Missense_Mutation p.R380H 0.09 deleterious(0) possibly_damaging(0.693) TCGA-22-1000-01 12 8212141 8212141 G T C3AR1 Missense_Mutation p.S214Y 0.05 tolerated(0.67) benign(0.104) TCGA-22-1000-01 12 8759522 8759522 A G AICDA Missense_Mutation p.V32A 0.05 tolerated(0.36) possibly_damaging(0.575) TCGA-22-1000-01 13 32363308 32363308 C A RXFP2 Missense_Mutation p.P375T 0.04 deleterious(0.01) benign(0.014) TCGA-22-1000-01 13 37427699 37427699 C T SMAD9 Missense_Mutation p.V373I 0.09 deleterious(0.01) probably_damaging(0.992) TCGA-22-1000-01 13 46732704 46732704 C T LCP1 Missense_Mutation p.G104D 0.09 deleterious(0.01) possibly_damaging(0.707) TCGA-22-1000-01 13 48947585 48947585 C G RB1 Nonsense_Mutation p.S391* 0.15 TCGA-22-1000-01 14 72054904 72054904 C G SIPA1L1 Missense_Mutation p.C105W 0.08 tolerated(0.18) possibly_damaging(0.624) TCGA-22-1000-01 15 31362391 31362391 G - TRPM1 Frame_Shift_Del p.P58Lfs*71 0.12 TCGA-22-1000-01 15 58925402 58925402 C A ADAM10 Missense_Mutation p.G390V 0.12 deleterious(0) probably_damaging(1) TCGA-22-1000-01 15 66615853 66615853 G C DIS3L Missense_Mutation p.D533H 0.11 deleterious(0) probably_damaging(0.994) TCGA-22-1000-01 16 1642485 1642485 C A IFT140 Silent p.R158R 0.08 TCGA-22-1000-01 16 1642486 1642486 C A IFT140 Missense_Mutation p.R158L 0.08 deleterious(0.02) benign(0.077) TCGA-22-1000-01 16 1859262 1859262 C T HAGH 3'UTR 0.07 TCGA-22-1000-01 16 46706255 46706255 G C VPS35 Nonsense_Mutation p.Y430* 0.08 TCGA-22-1000-01 16 71065542 71065542 A T HYDIN Intron 0.10 TCGA-22-1000-01 16 75654635 75654635 C G ADAT1 Missense_Mutation p.K21N 0.08 deleterious(0) probably_damaging(0.999) TCGA-22-1000-01 16 77353790 77353790 G T ADAMTS18 Missense_Mutation p.R830S 0.11 tolerated(1) benign(0.003) TCGA-22-1000-01 17 38319849 38319849 G A CASC3 Missense_Mutation p.A301T 0.08 deleterious_low_confidence(0.01) benign(0.015) TCGA-22-1000-01 17 38319850 38319850 C T CASC3 Missense_Mutation p.A301V 0.08 deleterious_low_confidence(0.01) benign(0.231) TCGA-22-1000-01 17 45681280 45681280 G A NPEPPS Splice_Site p.X581_splice 0.09 TCGA-22-1000-01 17 51900791 51900791 G A KIF2B Missense_Mutation p.V133M 0.07 tolerated(0.16) benign(0.043) TCGA-22-1000-01 17 7578469 7578469 C A TP53 Missense_Mutation p.G154V 0.10 deleterious(0) probably_damaging(0.961) TCGA-22-1000-01 17 76087655 76087655 G T TNRC6C Missense_Mutation p.A1310S 0.17 tolerated(0.87) benign(0.102) TCGA-22-1000-01 18 13100490 13100490 A G CEP192 Missense_Mutation p.T2284A 0.08 deleterious(0) probably_damaging(0.922) TCGA-22-1000-01 18 74637510 74637510 G T ZNF236 Missense_Mutation p.A1341S 0.09 tolerated(0.08) benign(0.15) TCGA-22-1000-01 18 77895733 77895733 G A ADNP2 Missense_Mutation p.D813N 0.10 deleterious(0) probably_damaging(1) TCGA-22-1000-01 19 11943875 11943875 G T ZNF440 3'UTR 0.08 TCGA-22-1000-01 19 35449973 35449973 G C ZNF792 Silent p.A262A 0.06 TCGA-22-1000-01 19 42863340 42863340 G A MEGF8 Missense_Mutation p.D1745N 0.21 tolerated(0.23) possibly_damaging(0.8) TCGA-22-1000-01 19 56734020 56734020 C T ZSCAN5A Missense_Mutation p.E227K 0.05 tolerated(0.13) benign(0.263) TCGA-22-1000-01 19 56734033 56734033 C T ZSCAN5A Silent p.E222E 0.04 TCGA-22-1000-01 19 56734052 56734052 C T ZSCAN5A Missense_Mutation p.R216K 0.06 tolerated(0.6) benign(0.002) TCGA-22-1000-01 1 110029686 110029686 C T ATXN7L2 Missense_Mutation p.A119V 0.05 tolerated(0.07) benign(0.094) TCGA-22-1000-01 1 110993908 110993908 G A PROK1 Missense_Mutation p.G24R 0.08 tolerated(0.06) probably_damaging(0.992) TCGA-22-1000-01 1 154541999 154541999 C T CHRNB2 Silent p.Y42Y 0.09 TCGA-22-1000-01 1 169572373 169572373 A C SELP Nonsense_Mutation p.Y532* 0.08 TCGA-22-1000-01 1 197069919 197069920 - T ASPM Frame_Shift_Ins p.I2821Nfs*7 0.10 TCGA-22-1000-01 1 21042093 21042093 C A KIF17 Missense_Mutation p.G91C 0.08 deleterious(0) probably_damaging(1) TCGA-22-1000-01 1 220324682 220324682 T C RAB3GAP2 Missense_Mutation p.I1365V 0.07 tolerated(0.71) benign(0.007) TCGA-22-1000-01 1 248224012 248224012 A T OR2L3 Missense_Mutation p.D10V 0.07 deleterious(0) possibly_damaging(0.495) TCGA-22-1000-01 1 248343766 248343766 C T OR2M2 Missense_Mutation p.A160V 0.10 tolerated(1) benign(0.006) TCGA-22-1000-01 1 44433049 44433049 G A IPO13 Silent p.L892L 0.06 TCGA-22-1000-01 1 74670485 74670485 G C FPGT Missense_Mutation p.D252H 0.07 tolerated(0.21) benign(0.004) TCGA-22-1000-01 1 7723795 7723795 C T CAMTA1 Silent p.S396S 0.07 TCGA-22-1000-01 1 8399649 8399649 C G SLC45A1 Missense_Mutation p.S624C 0.09 tolerated(0.05) probably_damaging(0.95) TCGA-22-1000-01 20 35507522 35507522 C T TLDC2 Silent p.L90L 0.08 TCGA-22-1000-01 20 3652833 3652833 C T ADAM33 Nonsense_Mutation p.W515* 0.12 TCGA-22-1000-01 21 45987705 45987705 G A TSPEAR Silent p.I89I 0.14 TCGA-22-1000-01 22 19026338 19026338 G A DGCR2 3'UTR 0.10 TCGA-22-1000-01 22 19026521 19026521 G C DGCR2 Missense_Mutation p.L504V 0.07 tolerated_low_confidence(0.87) benign(0.257) TCGA-22-1000-01 22 20784796 20784796 G A SCARF2 Silent p.F374F 0.20 TCGA-22-1000-01 22 30038233 30038233 G A NF2 Missense_Mutation p.E136K 0.08 deleterious(0) possibly_damaging(0.596) TCGA-22-1000-01 2 135757567 135757567 G C MAP3K19 Missense_Mutation p.T85S 0.11 deleterious(0.02) benign(0.437) TCGA-22-1000-01 2 179629377 179629377 G T TTN Missense_Mutation p.H3289N 0.10 TCGA-22-1000-01 2 3691040 3691040 C T COLEC11 Missense_Mutation p.P126L 0.07 tolerated(0.33) probably_damaging(0.994) TCGA-22-1000-01 2 48573891 48573891 G T FOXN2 Splice_Site p.X179_splice 0.04 TCGA-22-1000-01 2 62103266 62103266 C T CCT4 Missense_Mutation p.G294E 0.05 deleterious(0) probably_damaging(0.99) TCGA-22-1000-01 2 89952921 89952921 T G IGKV1D-33 Missense_Mutation p.L14R 0.13 deleterious(0) probably_damaging(0.971) TCGA-22-1000-01 3 108822736 108822736 G T MORC1 Missense_Mutation p.F61L 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-22-1000-01 3 129389751 129389751 C G TMCC1 Missense_Mutation p.Q311H 0.07 tolerated(0.47) benign(0.01) TCGA-22-1000-01 3 154866337 154866337 A T MME Splice_Site p.X500_splice 0.08 TCGA-22-1000-01 3 156271477 156271477 G A SSR3 Missense_Mutation p.A76V 0.10 deleterious(0.02) benign(0.29) TCGA-22-1000-01 3 158983137 158983137 T C IQCJ Missense_Mutation p.I142T 0.08 deleterious_low_confidence(0.02) benign(0.154) TCGA-22-1000-01 3 165547779 165547779 C T BCHE Missense_Mutation p.G348D 0.08 deleterious(0) probably_damaging(1) TCGA-22-1000-01 3 169639021 169639021 G T SAMD7 Missense_Mutation p.V36L 0.04 tolerated(0.15) benign(0.106) TCGA-22-1000-01 3 186364086 186364086 C T FETUB Missense_Mutation p.P215L 0.07 deleterious(0) probably_damaging(0.969) TCGA-22-1000-01 3 44948660 44948660 G A TGM4 Missense_Mutation p.R432K 0.09 tolerated(0.05) benign(0.01) TCGA-22-1000-01 4 177142415 177142415 C A ASB5 Silent p.L187L 0.11 TCGA-22-1000-01 4 189012668 189012668 G A TRIML2 Silent p.L341L 0.09 TCGA-22-1000-01 4 62935837 62935837 G A LPHN3 Silent p.L1207L 0.09 TCGA-22-1000-01 4 83970418 83970418 A T COPS4 Missense_Mutation p.Y85F 0.09 tolerated(0.27) benign(0.112) TCGA-22-1000-01 4 985006 985006 G C SLC26A1 Silent p.L162L 0.11 TCGA-22-1000-01 5 140180926 140180926 C T PCDHA3 Silent p.I48I 0.10 TCGA-22-1000-01 5 140605268 140605268 C G PCDHB14 Missense_Mutation p.P731A 0.08 tolerated_low_confidence(0.18) benign(0.11) TCGA-22-1000-01 5 140605269 140605269 C T PCDHB14 Missense_Mutation p.P731L 0.09 tolerated_low_confidence(0.25) benign(0.209) TCGA-22-1000-01 5 140745545 140745545 C T PCDHGA5 Silent p.L550L 0.09 TCGA-22-1000-01 5 14406776 14406776 G T TRIO Missense_Mutation p.D1652Y 0.09 probably_damaging(0.976) TCGA-22-1000-01 5 175110682 175110682 T C HRH2 Missense_Mutation p.L149P 0.08 deleterious(0) probably_damaging(0.989) TCGA-22-1000-01 5 56167859 56167859 G C MAP3K1 Splice_Site p.X475_splice 0.10 TCGA-22-1000-01 5 89814981 89814981 T G LYSMD3 Missense_Mutation p.Q192H 0.07 deleterious(0) probably_damaging(0.962) TCGA-22-1000-01 5 90059149 90059149 G A GPR98 Missense_Mutation p.D4050N 0.06 benign(0.313) TCGA-22-1000-01 6 109766179 109766179 C T MICAL1 Silent p.K967K 0.07 TCGA-22-1000-01 6 168465691 168465691 C T FRMD1 Missense_Mutation p.V170M 0.07 deleterious(0) probably_damaging(0.999) TCGA-22-1000-01 6 3298354 3298354 G A SLC22A23 Missense_Mutation p.P394L 0.10 tolerated(1) benign(0.006) TCGA-22-1000-01 6 70071056 70071056 C G BAI3 Silent p.V1297V 0.06 TCGA-22-1000-01 6 75855910 75855910 T C COL12A1 Missense_Mutation p.M1490V 0.10 probably_damaging(0.981) TCGA-22-1000-01 6 84291965 84291965 T A SNAP91 Missense_Mutation p.S709C 0.04 tolerated(0.07) probably_damaging(0.991) TCGA-22-1000-01 7 128850908 128850908 G T SMO Missense_Mutation p.Q585H 0.08 tolerated(0.1) benign(0.396) TCGA-22-1000-01 7 31890303 31890303 T C PDE1C Missense_Mutation p.H328R 0.06 deleterious(0) probably_damaging(0.999) TCGA-22-1000-01 7 38370228 38370228 C T TRGV8 Missense_Mutation p.G24R 0.06 tolerated(0.28) possibly_damaging(0.547) TCGA-22-1000-01 7 86415888 86415888 C A GRM3 Silent p.I260I 0.09 TCGA-22-1000-01 8 121239513 121239513 A T COL14A1 Missense_Mutation p.T687S 0.08 tolerated(0.15) probably_damaging(0.999) TCGA-22-1000-01 8 18258251 18258251 T C NAT2 Silent p.Y246Y 0.10 TCGA-22-1000-01 9 125552061 125552061 C T OR5C1 Silent p.L284L 0.16 TCGA-22-1000-01 9 90500178 90500178 C T SPATA31E1 Missense_Mutation p.P259L 0.16 tolerated(0.25) possibly_damaging(0.852) TCGA-22-1000-01 X 109764688 109764688 C T TDGF1P3 RNA 0.05 TCGA-22-1000-01 X 3228489 3228489 C G MXRA5 Missense_Mutation p.Q2585H 0.17 tolerated(0.14) benign(0.215) TCGA-22-1000-01 X 57935672 57935672 C G ZXDA Missense_Mutation p.G395R 0.15 deleterious(0) probably_damaging(0.92) TCGA-22-1000-01 X 91138026 91138026 C A PCDH11X Intron 0.21 TCGA-22-1002-01 10 105815545 105815545 T C COL17A1 Missense_Mutation p.E561G 0.18 unknown(0) TCGA-22-1002-01 10 120353576 120353576 G C PRLHR 3'UTR 0.15 TCGA-22-1002-01 10 127737858 127737858 C T ADAM12 Silent p.G630G 0.13 TCGA-22-1002-01 10 135342029 135342029 G T CYP2E1 Silent p.S74S 0.20 TCGA-22-1002-01 10 17156027 17156027 T C CUBN Silent p.T294T 0.27 TCGA-22-1002-01 10 30604932 30604932 C A MTPAP Missense_Mutation p.G449V 0.06 deleterious(0) probably_damaging(0.99) TCGA-22-1002-01 10 33217124 33217124 T C ITGB1 Missense_Mutation p.M149V 0.16 deleterious(0.01) benign(0.158) TCGA-22-1002-01 10 48390601 48390601 G A RBP3 Missense_Mutation p.P93S 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-22-1002-01 10 51225584 51225584 C A AGAP8 Missense_Mutation p.W466C 0.11 deleterious(0) probably_damaging(0.999) TCGA-22-1002-01 10 60573693 60573693 A G BICC1 Missense_Mutation p.H827R 0.17 tolerated(0.58) benign(0.031) TCGA-22-1002-01 10 63999436 63999436 T A RTKN2 Silent p.T153T 0.25 TCGA-22-1002-01 10 68979521 68979521 A G CTNNA3 Silent p.S229S 0.19 TCGA-22-1002-01 10 95518045 95518045 T A LGI1 Nonsense_Mutation p.C48* 0.17 TCGA-22-1002-01 10 96006091 96006091 G T PLCE1 Missense_Mutation p.D937Y 0.18 deleterious(0) probably_damaging(0.986) TCGA-22-1002-01 11 116692448 116692448 A T APOA4 Missense_Mutation p.L109Q 0.19 deleterious(0) possibly_damaging(0.68) TCGA-22-1002-01 11 123624487 123624487 G T OR6X1 Missense_Mutation p.S247Y 0.22 deleterious(0) possibly_damaging(0.863) TCGA-22-1002-01 11 124765025 124765025 C A ROBO4 Missense_Mutation p.W367C 0.05 deleterious(0) probably_damaging(1) TCGA-22-1002-01 11 1276684 1276684 G A MUC5B Missense_Mutation p.R5321K 0.23 unknown(0) TCGA-22-1002-01 11 20404575 20404575 A G HTATIP2 Missense_Mutation p.R219G 0.14 deleterious(0.01) probably_damaging(0.94) TCGA-22-1002-01 11 4388864 4388864 A C OR52B4 Missense_Mutation p.M221R 0.23 deleterious(0.01) benign(0.251) TCGA-22-1002-01 11 48238463 48238463 T C OR4B1 Silent p.L34L 0.11 TCGA-22-1002-01 11 49974694 49974694 C A OR4C13 Silent p.S240S 0.17 TCGA-22-1002-01 11 49974695 49974695 C A OR4C13 Missense_Mutation p.H241N 0.17 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-22-1002-01 11 5068293 5068293 T C OR52J3 Missense_Mutation p.Y180H 0.06 deleterious(0.01) probably_damaging(1) TCGA-22-1002-01 11 55579290 55579290 C A OR5L1 Silent p.A116A 0.14 TCGA-22-1002-01 11 57003922 57003922 G C APLNR Missense_Mutation p.S186C 0.08 deleterious(0) probably_damaging(0.995) TCGA-22-1002-01 11 57235245 57235245 C T RTN4RL2 Silent p.L65L 0.04 TCGA-22-1002-01 11 58170406 58170406 C A OR5B3 Silent p.G159G 0.11 TCGA-22-1002-01 11 59481095 59481095 G T OR10V1 Missense_Mutation p.S75Y 0.19 deleterious(0) possibly_damaging(0.841) TCGA-22-1002-01 11 76371859 76371859 C A LRRC32 Missense_Mutation p.D260Y 0.12 tolerated(0.06) possibly_damaging(0.549) TCGA-22-1002-01 12 101603442 101603442 G T SLC5A8 Missense_Mutation p.T62N 0.16 deleterious(0) possibly_damaging(0.903) TCGA-22-1002-01 12 121001268 121001268 C G RNF10 Missense_Mutation p.P458R 0.14 tolerated(0.15) benign(0.036) TCGA-22-1002-01 12 18891942 18891942 T A CAPZA3 Nonsense_Mutation p.L247* 0.16 TCGA-22-1002-01 12 21028260 21028260 C A SLCO1B3 Silent p.S273S 0.17 TCGA-22-1002-01 12 21028261 21028261 A T SLCO1B3 Missense_Mutation p.I274L 0.17 tolerated(0.07) benign(0.232) TCGA-22-1002-01 12 49420213 49420213 C A KMT2D Missense_Mutation p.R5179L 0.14 unknown(0) TCGA-22-1002-01 12 49441830 49441830 C A KMT2D Missense_Mutation p.S1385I 0.22 probably_damaging(0.999) TCGA-22-1002-01 12 50524355 50524355 C A CERS5 Missense_Mutation p.M384I 0.17 tolerated(0.19) benign(0.017) TCGA-22-1002-01 12 55615657 55615657 T A OR10A7 Silent p.P283P 0.18 TCGA-22-1002-01 12 55615704 55615704 G T OR10A7 Missense_Mutation p.G299V 0.11 tolerated(0.35) benign(0.019) TCGA-22-1002-01 12 56077825 56077825 G T METTL7B Missense_Mutation p.V243F 0.26 deleterious(0) possibly_damaging(0.821) TCGA-22-1002-01 12 56572240 56572240 G A SMARCC2 Nonsense_Mutation p.Q420* 0.18 TCGA-22-1002-01 12 70953163 70953163 C - PTPRB Frame_Shift_Del p.W1558* 0.15 TCGA-22-1002-01 12 81693080 81693080 C A PPFIA2 Missense_Mutation p.E908D 0.13 deleterious(0) possibly_damaging(0.85) TCGA-22-1002-01 12 9020640 9020640 G T A2ML1 Missense_Mutation p.C1307F 0.12 deleterious(0) probably_damaging(1) TCGA-22-1002-01 12 9313081 9313081 T C PZP Missense_Mutation p.I960V 0.12 deleterious(0) possibly_damaging(0.847) TCGA-22-1002-01 12 9317737 9317737 G T PZP Silent p.R829R 0.22 TCGA-22-1002-01 13 103718501 103718501 G T SLC10A2 Silent p.V33V 0.19 TCGA-22-1002-01 13 108862691 108862691 C A LIG4 Missense_Mutation p.G309V 0.07 deleterious(0) probably_damaging(1) TCGA-22-1002-01 13 111138055 111138055 G - COL4A2 Frame_Shift_Del p.R1028Gfs*39 0.11 TCGA-22-1002-01 13 113481199 113481199 G - ATP11A Frame_Shift_Del p.G406Dfs*50 0.25 TCGA-22-1002-01 13 28143222 28143222 C A LNX2 Missense_Mutation p.W200L 0.17 tolerated(0.78) possibly_damaging(0.484) TCGA-22-1002-01 13 36385067 36385067 C A DCLK1 Silent p.L531L 0.15 TCGA-22-1002-01 13 95114263 95114263 C T DCT Splice_Site p.X348_splice 0.11 TCGA-22-1002-01 14 22386462 22386462 C A TRAV13-2 Nonsense_Mutation p.Y10* 0.17 TCGA-22-1002-01 14 22434058 22434058 G T TRAV12-3 Missense_Mutation p.E37D 0.19 deleterious(0.01) probably_damaging(0.991) TCGA-22-1002-01 14 23884662 23884662 G T MYH7 Silent p.L1737L 0.13 TCGA-22-1002-01 14 24886215 24886215 G T NYNRIN Missense_Mutation p.D1754Y 0.11 deleterious_low_confidence(0.02) benign(0.032) TCGA-22-1002-01 14 30066964 30066964 C A PRKD1 Missense_Mutation p.V723L 0.14 tolerated(0.05) possibly_damaging(0.791) TCGA-22-1002-01 14 69522303 69522303 C A DCAF5 Missense_Mutation p.G367V 0.17 deleterious(0.02) possibly_damaging(0.764) TCGA-22-1002-01 15 23810970 23810970 C A MKRN3 Missense_Mutation p.A14D 0.19 tolerated(0.27) unknown(0) TCGA-22-1002-01 15 23890424 23890424 C A MAGEL2 Missense_Mutation p.Q219H 0.22 deleterious(0.05) benign(0.018) TCGA-22-1002-01 15 25451412 25451412 T A SNORD115-20 RNA 0.18 TCGA-22-1002-01 15 25458839 25458839 A T SNORD115-24 RNA 0.08 TCGA-22-1002-01 15 26793204 26793204 G T GABRB3 Silent p.G386G 0.08 TCGA-22-1002-01 15 29346771 29346771 G T APBA2 Missense_Mutation p.Q228H 0.11 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-22-1002-01 15 34628941 34628941 T C SLC12A6 5'UTR 0.24 TCGA-22-1002-01 15 48782195 48782195 C A FBN1 Missense_Mutation p.A979S 0.18 benign(0.247) TCGA-22-1002-01 15 79298689 79298689 G T RASGRF1 Silent p.A651A 0.21 TCGA-22-1002-01 15 79755584 79755584 G T KIAA1024 Missense_Mutation p.R825L 0.10 deleterious(0) possibly_damaging(0.635) TCGA-22-1002-01 15 83349700 83349700 G T AP3B2 Missense_Mutation p.N220K 0.21 deleterious(0) possibly_damaging(0.811) TCGA-22-1002-01 15 83428314 83428314 T C FSD2 Missense_Mutation p.D679G 0.11 deleterious(0) probably_damaging(0.986) TCGA-22-1002-01 16 111619 111619 C A RHBDF1 Silent p.A428A 0.20 TCGA-22-1002-01 16 20380837 20380837 T A PDILT Missense_Mutation p.S365C 0.19 deleterious(0) probably_damaging(0.956) TCGA-22-1002-01 16 20410427 20410427 G A PDILT Missense_Mutation p.L66F 0.05 tolerated(0.57) probably_damaging(0.938) TCGA-22-1002-01 16 23573588 23573588 C - UBFD1 Frame_Shift_Del p.Q210Rfs*20 0.09 TCGA-22-1002-01 16 23768999 23768999 C A CHP2 3'UTR 0.12 TCGA-22-1002-01 16 31422791 31422791 C G ITGAD Missense_Mutation p.L554V 0.16 tolerated(0.32) benign(0.006) TCGA-22-1002-01 16 3367355 3367355 A T ZNF75A Missense_Mutation p.H126L 0.10 tolerated(0.06) benign(0.044) TCGA-22-1002-01 16 57416881 57416881 G C CX3CL1 Silent p.A377A 0.19 TCGA-22-1002-01 16 67209108 67209108 T C NOL3 3'UTR 0.47 TCGA-22-1002-01 16 70902522 70902522 C T HYDIN Nonsense_Mutation p.W3754* 0.19 TCGA-22-1002-01 16 7680645 7680645 C A RBFOX1 Silent p.S259S 0.17 TCGA-22-1002-01 16 78062080 78062080 G T CLEC3A Silent p.L73L 0.31 TCGA-22-1002-01 17 10535885 10535885 C T MYH3 Missense_Mutation p.D1622N 0.20 deleterious(0.02) possibly_damaging(0.854) TCGA-22-1002-01 17 19687111 19687111 C A ULK2 Missense_Mutation p.A787S 0.26 tolerated(0.37) possibly_damaging(0.624) TCGA-22-1002-01 17 21731268 21731268 G A UBBP4 Intron 0.10 TCGA-22-1002-01 17 21731300 21731300 G T UBBP4 Intron 0.13 TCGA-22-1002-01 17 2202345 2202345 C T SMG6 Missense_Mutation p.E568K 0.11 deleterious(0.02) benign(0.26) TCGA-22-1002-01 17 26110067 26110067 G A NOS2 Missense_Mutation p.T178I 0.16 deleterious(0) benign(0.376) TCGA-22-1002-01 17 26370294 26370294 C T NLK Missense_Mutation p.P132L 0.18 tolerated(0.63) benign(0.001) TCGA-22-1002-01 17 26680782 26680782 A G POLDIP2 Missense_Mutation p.V125A 0.03 tolerated(0.08) benign(0.053) TCGA-22-1002-01 17 34431319 34431319 C G CCL4 Silent p.V7V 0.16 TCGA-22-1002-01 17 3524666 3524666 T C SHPK Missense_Mutation p.I230V 0.03 tolerated(1) benign(0.006) TCGA-22-1002-01 17 37107844 37107844 G C FBXO47 Missense_Mutation p.C202W 0.14 tolerated(0.11) benign(0.353) TCGA-22-1002-01 17 38633765 38633765 C T TNS4 3'UTR 0.16 TCGA-22-1002-01 17 39316350 39316350 A G KRTAP4-4 3'UTR 0.24 TCGA-22-1002-01 17 4088199 4088199 G A ANKFY1 Missense_Mutation p.A580V 0.05 tolerated(0.23) benign(0.008) TCGA-22-1002-01 17 42289030 42289030 G A UBTF Nonsense_Mutation p.Q331* 0.19 TCGA-22-1002-01 17 43010134 43010134 G T KIF18B Missense_Mutation p.A382D 0.16 tolerated(0.66) benign(0.299) TCGA-22-1002-01 17 43013655 43013655 G T KIF18B Silent p.R20R 0.18 TCGA-22-1002-01 17 45897348 45897348 C G OSBPL7 Missense_Mutation p.G64R 0.15 deleterious(0) probably_damaging(1) TCGA-22-1002-01 17 59147334 59147334 C A BCAS3 Intron 0.21 TCGA-22-1002-01 17 59557523 59557523 G A TBX4 Silent p.P288P 0.10 TCGA-22-1002-01 17 7578469 7578469 C - TP53 Frame_Shift_Del p.G154Afs*16 0.28 TCGA-22-1002-01 17 76388642 76388642 G A PGS1 Missense_Mutation p.V77M 0.18 deleterious(0.04) benign(0.346) TCGA-22-1002-01 17 80210985 80210985 C A CSNK1D Missense_Mutation p.D158Y 0.22 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-22-1002-01 17 916363 916363 G C ABR Missense_Mutation p.D611E 0.07 tolerated(1) benign(0.341) TCGA-22-1002-01 18 40850570 40850570 G T SYT4 Silent p.I338I 0.14 TCGA-22-1002-01 18 5416197 5416197 T A EPB41L3 Missense_Mutation p.R563W 0.20 deleterious(0.02) possibly_damaging(0.514) TCGA-22-1002-01 18 5416198 5416198 C A EPB41L3 Silent p.G562G 0.20 TCGA-22-1002-01 18 56648807 56648807 T A ZNF532 Missense_Mutation p.D1123E 0.17 tolerated(1) benign(0) TCGA-22-1002-01 18 61649041 61649041 T A SERPINB8 Missense_Mutation p.H131Q 0.18 tolerated(0.19) possibly_damaging(0.483) TCGA-22-1002-01 18 67672496 67672496 G A RTTN Missense_Mutation p.T2178I 0.05 tolerated(0.08) benign(0.016) TCGA-22-1002-01 18 72998468 72998468 G T TSHZ1 Missense_Mutation p.G324V 0.24 tolerated(0.06) benign(0.018) TCGA-22-1002-01 19 11314989 11314989 C A DOCK6 Missense_Mutation p.V1703L 0.12 deleterious(0.03) benign(0.05) TCGA-22-1002-01 19 15234201 15234201 T C ILVBL Missense_Mutation p.M108V 0.23 tolerated(1) benign(0) TCGA-22-1002-01 19 17873543 17873543 T C FCHO1 Intron 0.08 TCGA-22-1002-01 19 18376717 18376717 C A KIAA1683 Missense_Mutation p.G545C 0.08 deleterious(0.04) benign(0.007) TCGA-22-1002-01 19 20216114 20216114 C T ZNF90 Missense_Mutation p.A72V 0.05 tolerated(0.12) benign(0.344) TCGA-22-1002-01 19 22940611 22940611 A G ZNF99 Silent p.T700T 0.10 TCGA-22-1002-01 19 22941338 22941338 C T ZNF99 Missense_Mutation p.C458Y 0.11 deleterious(0) probably_damaging(0.978) TCGA-22-1002-01 19 22952122 22952122 G C ZNF99 Missense_Mutation p.S3W 0.13 tolerated(0.16) possibly_damaging(0.799) TCGA-22-1002-01 19 34712450 34712450 A G LSM14A Missense_Mutation p.N392S 0.14 deleterious(0) probably_damaging(0.996) TCGA-22-1002-01 19 36273406 36273406 A G ARHGAP33 Missense_Mutation p.Y406C 0.22 deleterious_low_confidence(0) possibly_damaging(0.901) TCGA-22-1002-01 19 36276001 36276001 G A ARHGAP33 Missense_Mutation p.A572T 0.31 tolerated_low_confidence(0.54) benign(0) TCGA-22-1002-01 19 3728466 3728466 C T TJP3 Silent p.A21A 0.24 TCGA-22-1002-01 19 37644466 37644466 C T ZNF585A Missense_Mutation p.S57N 0.05 tolerated(0.36) benign(0.003) TCGA-22-1002-01 19 38948696 38948696 G T RYR1 Missense_Mutation p.R644L 0.21 probably_damaging(0.972) TCGA-22-1002-01 19 40886743 40886743 G A HIPK4 Silent p.A385A 0.04 TCGA-22-1002-01 19 40978528 40978528 G A SPTBN4 5'UTR 0.06 TCGA-22-1002-01 19 41744043 41744043 G T AXL Silent p.V326V 0.13 TCGA-22-1002-01 19 42795618 42795618 G C CIC Missense_Mutation p.A900P 0.09 probably_damaging(0.981) TCGA-22-1002-01 19 43348664 43348664 A G PSG10P RNA 0.23 TCGA-22-1002-01 19 47423517 47423517 C T ARHGAP35 Nonsense_Mutation p.R529* 0.14 TCGA-22-1002-01 19 49142814 49142814 G T CA11 Missense_Mutation p.S211Y 0.17 tolerated(0.22) probably_damaging(0.995) TCGA-22-1002-01 19 50823879 50823879 G A KCNC3 Missense_Mutation p.A714V 0.07 tolerated_low_confidence(0.08) benign(0.018) TCGA-22-1002-01 19 51363346 51363346 G A KLK3 Missense_Mutation p.R250Q 0.18 tolerated(0.36) benign(0.021) TCGA-22-1002-01 19 53875641 53875641 G T ZNF525 Intron 0.20 TCGA-22-1002-01 19 54327462 54327462 G A NLRP12 5'UTR 0.37 TCGA-22-1002-01 19 58004733 58004733 C A ZNF419 Missense_Mutation p.R271S 0.12 deleterious(0.02) benign(0.322) TCGA-22-1002-01 19 8206868 8206868 C A FBN3 Missense_Mutation p.C232F 0.16 deleterious(0) probably_damaging(1) TCGA-22-1002-01 19 8550681 8550681 A G HNRNPM Missense_Mutation p.M457V 0.15 deleterious(0.02) benign(0.159) TCGA-22-1002-01 19 9068728 9068728 A T MUC16 Missense_Mutation p.L6240M 0.13 unknown(0) TCGA-22-1002-01 19 9070944 9070944 G T MUC16 Missense_Mutation p.T5501K 0.10 unknown(0) TCGA-22-1002-01 19 9071179 9071179 C T MUC16 Missense_Mutation p.A5423T 0.10 unknown(0) TCGA-22-1002-01 1 101186048 101186048 C G VCAM1 Missense_Mutation p.I27M 0.19 tolerated(0.16) possibly_damaging(0.605) TCGA-22-1002-01 1 102296361 102296361 A T OLFM3 Missense_Mutation p.I80N 0.18 deleterious(0.03) probably_damaging(0.998) TCGA-22-1002-01 1 116244008 116244008 G T CASQ2 Missense_Mutation p.L352I 0.10 tolerated(0.06) probably_damaging(0.997) TCGA-22-1002-01 1 146680376 146680376 T C FMO5 Intron 0.06 TCGA-22-1002-01 1 157772324 157772324 C A FCRL1 Silent p.G150G 0.26 TCGA-22-1002-01 1 161049520 161049520 T A PVRL4 Missense_Mutation p.Q100L 0.28 tolerated(0.44) benign(0.006) TCGA-22-1002-01 1 161676950 161676950 G T FCRLA 5'UTR 0.27 TCGA-22-1002-01 1 190203572 190203572 A T BRINP3 Missense_Mutation p.S218R 0.27 deleterious(0) probably_damaging(0.991) TCGA-22-1002-01 1 209969720 209969720 G A IRF6 Nonsense_Mutation p.Q118* 0.25 TCGA-22-1002-01 1 235617588 235617588 C G B3GALNT2 Missense_Mutation p.W397C 0.06 deleterious(0) probably_damaging(1) TCGA-22-1002-01 1 245865995 245865995 C G KIF26B 3'UTR 0.30 TCGA-22-1002-01 1 247471832 247471832 C A ZNF496 Missense_Mutation p.Q317H 0.28 tolerated(0.1) benign(0.016) TCGA-22-1002-01 1 247752411 247752411 G A OR2G2 Silent p.V250V 0.08 TCGA-22-1002-01 1 248224406 248224406 G T OR2L3 Silent p.V141V 0.23 TCGA-22-1002-01 1 28660972 28660972 C T MED18 Missense_Mutation p.R40C 0.28 deleterious(0) probably_damaging(0.991) TCGA-22-1002-01 1 37346432 37346432 G T GRIK3 Missense_Mutation p.T118N 0.26 deleterious(0) benign(0.032) TCGA-22-1002-01 1 38397681 38397681 G C INPP5B Missense_Mutation p.R146G 0.06 deleterious(0.01) benign(0.001) TCGA-22-1002-01 1 40882625 40882625 G T SMAP2 Missense_Mutation p.G341C 0.18 deleterious(0) probably_damaging(1) TCGA-22-1002-01 1 42896432 42896432 G A ZMYND12 Missense_Mutation p.S358L 0.21 tolerated(0.09) benign(0.004) TCGA-22-1002-01 1 52703393 52703393 A G ZFYVE9 Missense_Mutation p.T102A 0.24 tolerated_low_confidence(0.17) benign(0.265) TCGA-22-1002-01 1 65895721 65895721 G A LEPROT Missense_Mutation p.R90H 0.17 tolerated(0.21) benign(0.42) TCGA-22-1002-01 1 70505002 70505002 G T LRRC7 Missense_Mutation p.M1127I 0.18 tolerated(0.07) benign(0.014) TCGA-22-1002-01 1 71477766 71477766 A G PTGER3 Intron 0.26 TCGA-22-1002-01 1 79387437 79387437 C T ELTD1 Nonsense_Mutation p.W373* 0.16 TCGA-22-1002-01 20 2644400 2644400 T C IDH3B Missense_Mutation p.E41G 0.11 tolerated(0.26) benign(0) TCGA-22-1002-01 20 30556423 30556423 C A XKR7 Silent p.R149R 0.15 TCGA-22-1002-01 20 33706383 33706383 G A EDEM2 Intron 0.08 TCGA-22-1002-01 20 43384759 43384759 C A RIMS4 3'UTR 0.21 TCGA-22-1002-01 20 47244106 47244106 C A PREX1 Missense_Mutation p.Q1639H 0.15 deleterious(0) possibly_damaging(0.806) TCGA-22-1002-01 20 47258756 47258756 C A PREX1 Missense_Mutation p.S1242I 0.25 tolerated(0.05) benign(0.059) TCGA-22-1002-01 20 4843520 4843520 C A SLC23A2 Missense_Mutation p.A464S 0.15 deleterious(0.02) possibly_damaging(0.492) TCGA-22-1002-01 20 744208 744208 A C SLC52A3 Missense_Mutation p.L336R 0.11 deleterious(0.05) probably_damaging(0.92) TCGA-22-1002-01 21 32253716 32253716 G T KRTAP11-1 Missense_Mutation p.P43H 0.11 deleterious(0) probably_damaging(1) TCGA-22-1002-01 21 41516466 41516466 C A DSCAM Missense_Mutation p.G1071C 0.12 deleterious(0) probably_damaging(0.999) TCGA-22-1002-01 21 45858950 45858950 G T TRPM2 Missense_Mutation p.G1390C 0.11 deleterious(0) probably_damaging(0.995) TCGA-22-1002-01 21 45959294 45959294 G T KRTAP10-1 Missense_Mutation p.P247H 0.14 deleterious(0) unknown(0) TCGA-22-1002-01 21 46702334 46702334 C T POFUT2 Missense_Mutation p.V190I 0.25 tolerated(0.16) benign(0.266) TCGA-22-1002-01 21 47549345 47549345 C T COL6A2 Intron 0.18 TCGA-22-1002-01 22 17443620 17443620 G T GAB4 3'UTR 0.06 TCGA-22-1002-01 22 22160146 22160146 T C MAPK1 Missense_Mutation p.D162G 0.13 deleterious(0) probably_damaging(0.988) TCGA-22-1002-01 22 47089397 47089397 G T CERK Nonsense_Mutation p.C351* 0.22 TCGA-22-1002-01 2 100019492 100019492 A G REV1 Missense_Mutation p.S1082P 0.08 tolerated(0.51) benign(0) TCGA-22-1002-01 2 102460737 102460737 T A MAP4K4 Silent p.I399I 0.19 TCGA-22-1002-01 2 102968370 102968370 C G IL1RL1 Missense_Mutation p.Q554E 0.11 tolerated_low_confidence(0.14) benign(0.005) TCGA-22-1002-01 2 11727615 11727615 T G GREB1 Intron 0.13 TCGA-22-1002-01 2 158287463 158287463 G T CYTIP Silent p.P97P 0.12 TCGA-22-1002-01 2 179576701 179576701 C A TTN Missense_Mutation p.V9286F 0.21 TCGA-22-1002-01 2 179640549 179640549 G T TTN Silent p.T2014T 0.22 TCGA-22-1002-01 2 197706014 197706014 G T PGAP1 Missense_Mutation p.L905I 0.14 tolerated(0.33) benign(0.001) TCGA-22-1002-01 2 201724413 201724413 C A CLK1 Missense_Mutation p.D222Y 0.13 deleterious(0) probably_damaging(1) TCGA-22-1002-01 2 212652768 212652768 T C ERBB4 Missense_Mutation p.T180A 0.16 tolerated(0.55) benign(0.009) TCGA-22-1002-01 2 216930136 216930136 C T PECR Missense_Mutation p.G108E 0.12 deleterious(0) probably_damaging(0.997) TCGA-22-1002-01 2 233677120 233677120 A T GIGYF2 Missense_Mutation p.I697F 0.22 possibly_damaging(0.852) TCGA-22-1002-01 2 25061400 25061400 C A ADCY3 Nonsense_Mutation p.E483* 0.17 TCGA-22-1002-01 2 26654794 26654794 G C DRC1 Missense_Mutation p.E270Q 0.23 deleterious(0.02) possibly_damaging(0.828) TCGA-22-1002-01 2 27461407 27461407 A - CAD Frame_Shift_Del p.K1657Rfs*51 0.19 TCGA-22-1002-01 2 44051083 44051083 C A ABCG5 Silent p.P431P 0.11 TCGA-22-1002-01 2 71360216 71360216 A G MPHOSPH10 Missense_Mutation p.N93S 0.12 tolerated(0.57) benign(0.021) TCGA-22-1002-01 2 84650814 84650814 G A SUCLG1 3'UTR 0.26 TCGA-22-1002-01 2 90139527 90139527 C A IGKV1D-16 Missense_Mutation p.L100M 0.18 deleterious(0.05) probably_damaging(0.927) TCGA-22-1002-01 3 108363259 108363259 C T DZIP3 Nonsense_Mutation p.Q464* 0.09 TCGA-22-1002-01 3 11340856 11340856 G T ATG7 Missense_Mutation p.A61S 0.22 tolerated(0.63) benign(0.003) TCGA-22-1002-01 3 119256055 119256055 G C CD80 Missense_Mutation p.T210S 0.17 tolerated(0.64) benign(0.004) TCGA-22-1002-01 3 119434428 119434428 C A MAATS1 Missense_Mutation p.P174T 0.25 tolerated(0.12) benign(0.008) TCGA-22-1002-01 3 137880635 137880635 C A DBR1 3'UTR 0.18 TCGA-22-1002-01 3 183683230 183683230 C G ABCC5 Missense_Mutation p.Q631H 0.17 deleterious(0.01) possibly_damaging(0.711) TCGA-22-1002-01 3 195517500 195517500 G A MUC4 Silent p.D317D 0.17 TCGA-22-1002-01 3 35835355 35835355 C T ARPP21 Missense_Mutation p.P783S 0.23 deleterious_low_confidence(0.01) probably_damaging(0.966) TCGA-22-1002-01 3 49294148 49294148 T C CCDC36 Silent p.N406N 0.23 TCGA-22-1002-01 3 56763415 56763415 T C ARHGEF3 Silent p.Q520Q 0.21 TCGA-22-1002-01 3 72799702 72799702 A C SHQ1 Missense_Mutation p.S489R 0.08 tolerated_low_confidence(0.56) benign(0.001) TCGA-22-1002-01 3 75679975 75679975 C A MIR1324 RNA 0.04 TCGA-22-1002-01 4 100062715 100062715 G T ADH4 Missense_Mutation p.P80Q 0.10 tolerated(0.07) possibly_damaging(0.602) TCGA-22-1002-01 4 111409723 111409723 C T ENPEP Missense_Mutation p.P224L 0.14 deleterious(0) probably_damaging(1) TCGA-22-1002-01 4 113544995 113544995 C A C4orf21 Missense_Mutation p.S47I 0.08 deleterious(0) probably_damaging(0.918) TCGA-22-1002-01 4 114257161 114257161 A C ANK2 Missense_Mutation p.Q1180P 0.11 probably_damaging(0.999) TCGA-22-1002-01 4 128584730 128584730 A G INTU Silent p.S321S 0.10 TCGA-22-1002-01 4 190947597 190947597 A T FRG2 Nonsense_Mutation p.Y91* 0.35 TCGA-22-1002-01 4 20255339 20255339 G T SLIT2 5'UTR 0.24 TCGA-22-1002-01 4 55139838 55139838 G T PDGFRA Missense_Mutation p.R500L 0.11 deleterious(0) probably_damaging(0.986) TCGA-22-1002-01 4 5981919 5981919 C A C4orf50 Missense_Mutation p.Q524H 0.08 deleterious(0.02) probably_damaging(0.951) TCGA-22-1002-01 4 7012487 7012487 T G TBC1D14 Missense_Mutation p.F542L 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-22-1002-01 4 82363480 82363480 C G RASGEF1B Missense_Mutation p.V327L 0.08 deleterious(0.04) benign(0.277) TCGA-22-1002-01 5 126755734 126755734 A G MEGF10 Splice_Site p.X476_splice 0.17 TCGA-22-1002-01 5 137518647 137518647 T C KIF20A Missense_Mutation p.I267T 0.27 tolerated(1) benign(0.001) TCGA-22-1002-01 5 140209904 140209904 G A PCDHA6 Missense_Mutation p.S743N 0.26 deleterious_low_confidence(0.03) benign(0.213) TCGA-22-1002-01 5 140263278 140263278 C G PCDHA13 Missense_Mutation p.F475L 0.19 tolerated_low_confidence(0.05) possibly_damaging(0.837) TCGA-22-1002-01 5 140554682 140554682 G T PCDHB7 Missense_Mutation p.G756C 0.08 deleterious_low_confidence(0) possibly_damaging(0.832) TCGA-22-1002-01 5 140604043 140604043 A G PCDHB14 Silent p.T322T 0.19 TCGA-22-1002-01 5 161128669 161128669 G T GABRA6 Missense_Mutation p.D418Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-22-1002-01 5 23510043 23510043 C T PRDM9 Nonsense_Mutation p.R70* 0.04 TCGA-22-1002-01 5 35793334 35793334 C T SPEF2 Missense_Mutation p.S1543L 0.08 deleterious(0) benign(0.154) TCGA-22-1002-01 5 78533462 78533462 G A JMY Missense_Mutation p.G330D 0.16 deleterious(0) probably_damaging(1) TCGA-22-1002-01 6 112420591 112420591 G T FAM229B Silent p.G35G 0.03 TCGA-22-1002-01 6 123332243 123332243 C A CLVS2 Missense_Mutation p.T168N 0.19 deleterious(0.01) possibly_damaging(0.809) TCGA-22-1002-01 6 143771755 143771755 G A ADAT2 Missense_Mutation p.A14V 0.17 tolerated(0.38) benign(0.037) TCGA-22-1002-01 6 24781805 24781805 A G GMNN Missense_Mutation p.N77S 0.18 tolerated(0.18) benign(0.024) TCGA-22-1002-01 6 26158775 26158775 G C HIST1H2BD Missense_Mutation p.K126N 0.12 deleterious_low_confidence(0) possibly_damaging(0.51) TCGA-22-1002-01 6 27440132 27440132 C A ZNF184 5'UTR 0.20 TCGA-22-1002-01 6 27440133 27440133 C G ZNF184 5'UTR 0.19 TCGA-22-1002-01 6 30104741 30104741 G T TRIM40 5'Flank 0.19 TCGA-22-1002-01 6 45290693 45290693 G C SUPT3H 5'UTR 0.08 TCGA-22-1002-01 6 4952549 4952549 G T CDYL Missense_Mutation p.C461F 0.20 tolerated(0.07) benign(0.116) TCGA-22-1002-01 6 572615 572615 C A EXOC2 Missense_Mutation p.A450S 0.17 tolerated(0.76) probably_damaging(0.935) TCGA-22-1002-01 6 57472407 57472407 A G PRIM2 3'UTR 0.12 TCGA-22-1002-01 6 87725839 87725839 A G HTR1E Missense_Mutation p.I263V 0.09 tolerated(1) benign(0.002) TCGA-22-1002-01 7 116960739 116960739 G A WNT2 Silent p.A64A 0.14 TCGA-22-1002-01 7 128485048 128485048 A T FLNC Missense_Mutation p.T1177S 0.27 tolerated(0.49) benign(0.062) TCGA-22-1002-01 7 137257552 137257552 C A DGKI Missense_Mutation p.Q598H 0.29 deleterious(0.03) probably_damaging(0.917) TCGA-22-1002-01 7 148895526 148895526 C A ZNF282 Silent p.P89P 0.15 TCGA-22-1002-01 7 20795327 20795327 C A ABCB5 3'UTR 0.33 TCGA-22-1002-01 7 21469888 21469888 G T SP4 Nonsense_Mutation p.E369* 0.12 TCGA-22-1002-01 7 21847537 21847537 A G DNAH11 Missense_Mutation p.E3408G 0.16 benign(0.197) TCGA-22-1002-01 7 2834600 2834600 T A GNA12 Missense_Mutation p.I163F 0.24 deleterious(0) probably_damaging(0.984) TCGA-22-1002-01 7 31378481 31378481 C G NEUROD6 Missense_Mutation p.E134D 0.20 deleterious(0) possibly_damaging(0.874) TCGA-22-1002-01 7 42007413 42007413 T C GLI3 Missense_Mutation p.I738V 0.16 tolerated(0.69) benign(0.001) TCGA-22-1002-01 7 4273008 4273008 G T SDK1 Missense_Mutation p.E1983D 0.13 tolerated(1) benign(0.002) TCGA-22-1002-01 7 48317730 48317730 G T ABCA13 Silent p.L2313L 0.40 TCGA-22-1002-01 7 51096398 51096398 G A COBL Nonsense_Mutation p.Q799* 0.05 TCGA-22-1002-01 7 65439351 65439351 G T GUSB Missense_Mutation p.P441H 0.06 deleterious(0) probably_damaging(1) TCGA-22-1002-01 7 66410191 66410192 - C TMEM248 Frame_Shift_Ins p.R131Pfs*40 0.17 TCGA-22-1002-01 7 70597922 70597922 G A WBSCR17 Missense_Mutation p.R45H 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.63) TCGA-22-1002-01 8 10387042 10387042 G A PRSS55 Silent p.E60E 0.11 TCGA-22-1002-01 8 122640991 122640991 G A HAS2 Missense_Mutation p.A197V 0.15 deleterious(0) possibly_damaging(0.873) TCGA-22-1002-01 8 125072483 125072483 C A FER1L6 Nonsense_Mutation p.Y979* 0.18 TCGA-22-1002-01 8 134063103 134063103 G T SLA Missense_Mutation p.P80H 0.14 deleterious(0.03) probably_damaging(0.963) TCGA-22-1002-01 8 17169148 17169148 A G MTMR7 Intron 0.18 TCGA-22-1002-01 8 37704488 37704488 C A BRF2 Silent p.T140T 0.11 TCGA-22-1002-01 8 37794297 37794297 A G GOT1L1 Missense_Mutation p.V235A 0.17 tolerated(0.06) possibly_damaging(0.822) TCGA-22-1002-01 8 37968287 37968287 C T ASH2L Missense_Mutation p.A174V 0.05 deleterious(0) possibly_damaging(0.511) TCGA-22-1002-01 8 38146064 38146064 C T WHSC1L1 Missense_Mutation p.E1148K 0.13 tolerated(0.6) probably_damaging(0.927) TCGA-22-1002-01 8 38146112 38146112 C T WHSC1L1 Missense_Mutation p.D1132N 0.11 deleterious(0.01) possibly_damaging(0.707) TCGA-22-1002-01 8 38146142 38146142 C T WHSC1L1 Missense_Mutation p.E1122K 0.12 deleterious(0) probably_damaging(1) TCGA-22-1002-01 8 38146156 38146156 C T WHSC1L1 Missense_Mutation p.R1117K 0.12 deleterious(0.02) benign(0.158) TCGA-22-1002-01 8 73932953 73932953 C T TERF1 Silent p.P150P 0.16 TCGA-22-1002-01 8 77765924 77765924 T C ZFHX4 Missense_Mutation p.I2256T 0.12 probably_damaging(0.931) TCGA-22-1002-01 9 119158849 119158849 C A PAPPA Missense_Mutation p.A1613D 0.16 deleterious(0) possibly_damaging(0.665) TCGA-22-1002-01 9 138378128 138378128 G T PPP1R26 Missense_Mutation p.G591V 0.20 tolerated(0.07) benign(0.071) TCGA-22-1002-01 9 140705949 140705949 G T EHMT1 Missense_Mutation p.G917C 0.14 deleterious(0) probably_damaging(1) TCGA-22-1002-01 9 16552593 16552593 C A BNC2 Missense_Mutation p.V202L 0.29 deleterious(0) probably_damaging(0.987) TCGA-22-1002-01 9 32633383 32633383 C A TAF1L Missense_Mutation p.G732V 0.25 deleterious(0.05) benign(0.351) TCGA-22-1002-01 9 79270405 79270405 C A PRUNE2 Missense_Mutation p.D2764Y 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-22-1002-01 9 85615900 85615900 C A RASEF Missense_Mutation p.D450Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-22-1002-01 9 968063 968063 A G DMRT1 Missense_Mutation p.K349R 0.17 deleterious(0) probably_damaging(0.939) TCGA-22-1002-01 9 98011585 98011585 C A FANCC 5'UTR 0.22 TCGA-22-1002-01 9 991171 991171 G A DMRT3 3'UTR 0.25 TCGA-22-1002-01 X 123019959 123019959 A G XIAP Missense_Mutation p.I149M 0.30 tolerated(1) benign(0) TCGA-22-1002-01 X 129804102 129804102 C A ENOX2 Missense_Mutation p.Q206H 0.29 deleterious(0.03) probably_damaging(0.997) TCGA-22-1002-01 X 138908947 138908947 T A ATP11C Silent p.T24T 0.34 TCGA-22-1002-01 X 142795061 142795061 C A SPANXN2 3'UTR 0.28 TCGA-22-1002-01 X 1584630 1584630 C A P2RY8 Silent p.V274V 0.14 TCGA-22-1002-01 X 47836919 47836919 T C ZNF182 Silent p.K189K 0.32 TCGA-22-1002-01 X 53279921 53279921 C A IQSEC2 Missense_Mutation p.G613C 0.62 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-22-1002-01 X 62917183 62917183 C T ARHGEF9 Missense_Mutation p.G128D 0.37 deleterious(0.02) probably_damaging(1) TCGA-22-1002-01 X 7177621 7177621 A G STS Missense_Mutation p.H210R 0.30 tolerated(0.59) benign(0) TCGA-22-1002-01 X 73042638 73042638 C A XIST RNA 0.10 TCGA-22-1002-01 X 74516241 74516241 C T UPRT Missense_Mutation p.P165L 0.16 deleterious(0) probably_damaging(0.995) TCGA-22-1002-01 Y 6738083 6738083 A T AMELY Missense_Mutation p.H22Q 0.09 tolerated(0.12) probably_damaging(0.964) TCGA-22-1005-01 10 104240463 104240463 C A ACTR1A 3'UTR 0.17 TCGA-22-1005-01 10 118319978 118319978 C T PNLIP Missense_Mutation p.H371Y 0.08 tolerated(1) benign(0.003) TCGA-22-1005-01 10 12077571 12077571 G A UPF2 5'UTR 0.16 TCGA-22-1005-01 10 15646295 15646295 C G ITGA8 Missense_Mutation p.R677T 0.06 deleterious(0.03) benign(0.375) TCGA-22-1005-01 10 21414808 21414808 C A C10orf113 Missense_Mutation p.G138C 0.05 deleterious_low_confidence(0.02) benign(0.378) TCGA-22-1005-01 10 25701210 25701210 T C GPR158 Silent p.S381S 0.06 TCGA-22-1005-01 10 50121541 50121541 G C LRRC18 Missense_Mutation p.N220K 0.04 tolerated(1) benign(0) TCGA-22-1005-01 10 52103772 52103772 C T SGMS1 Missense_Mutation p.D35N 0.05 tolerated(0.12) possibly_damaging(0.493) TCGA-22-1005-01 10 55566716 55566716 G T PCDH15 Missense_Mutation p.R1557S 0.12 deleterious_low_confidence(0.02) benign(0.043) TCGA-22-1005-01 10 56077201 56077201 C A PCDH15 Missense_Mutation p.D236Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-22-1005-01 10 56089441 56089441 G A PCDH15 Missense_Mutation p.P207L 0.05 deleterious(0.01) probably_damaging(0.969) TCGA-22-1005-01 10 67748542 67748542 G A CTNNA3 Silent p.L725L 0.10 TCGA-22-1005-01 10 68686745 68686745 T A LRRTM3 Missense_Mutation p.L24Q 0.07 deleterious(0.02) possibly_damaging(0.707) TCGA-22-1005-01 10 73406326 73406326 C A CDH23 Silent p.I59I 0.07 TCGA-22-1005-01 10 75523299 75523299 A C SEC24C Missense_Mutation p.T347P 0.11 deleterious(0) probably_damaging(0.951) TCGA-22-1005-01 10 87487626 87487626 C A GRID1 Nonsense_Mutation p.E507* 0.07 TCGA-22-1005-01 10 92509312 92509312 C A HTR7 Missense_Mutation p.R193S 0.07 deleterious(0) probably_damaging(0.992) TCGA-22-1005-01 10 95658463 95658463 G T SLC35G1 Missense_Mutation p.C105F 0.09 tolerated(0.59) probably_damaging(0.969) TCGA-22-1005-01 10 96741127 96741127 G - CYP2C9 Frame_Shift_Del 0.08 TCGA-22-1005-01 10 98770754 98770754 A T SLIT1 Missense_Mutation p.Y1113N 0.11 deleterious(0.01) probably_damaging(0.937) TCGA-22-1005-01 10 98770755 98770755 G A SLIT1 Silent p.G1112G 0.11 TCGA-22-1005-01 11 113650895 113650895 G C CLDN25 Missense_Mutation p.E126D 0.07 tolerated(0.21) possibly_damaging(0.707) TCGA-22-1005-01 11 117302357 117302357 G T DSCAML1 Missense_Mutation p.S1816Y 0.06 deleterious(0.01) possibly_damaging(0.844) TCGA-22-1005-01 11 117984022 117984022 G T TMPRSS4 Missense_Mutation p.G261V 0.05 deleterious(0) probably_damaging(1) TCGA-22-1005-01 11 119535963 119535963 C A PVRL1 Missense_Mutation p.G350W 0.11 tolerated(0.07) possibly_damaging(0.675) TCGA-22-1005-01 11 121000571 121000571 C T TECTA Silent p.N864N 0.09 TCGA-22-1005-01 11 121460825 121460825 A G SORL1 Silent p.R1385R 0.08 TCGA-22-1005-01 11 1220359 1220359 T A MUC5AC RNA 0.15 TCGA-22-1005-01 11 123909196 123909196 G C OR10G7 Missense_Mutation p.N171K 0.07 deleterious(0.02) possibly_damaging(0.555) TCGA-22-1005-01 11 124006865 124006865 G T VWA5A Missense_Mutation p.Q463H 0.04 deleterious(0.03) possibly_damaging(0.755) TCGA-22-1005-01 11 47726218 47726218 C A AGBL2 Nonsense_Mutation p.E155* 0.09 TCGA-22-1005-01 11 55406540 55406540 C - OR4P4 Frame_Shift_Del p.T237Lfs*6 0.09 TCGA-22-1005-01 11 56000021 56000021 C A OR5T2 Missense_Mutation p.R214M 0.05 deleterious(0) probably_damaging(0.976) TCGA-22-1005-01 11 56237542 56237542 A G OR5M3 Silent p.T144T 0.08 TCGA-22-1005-01 11 57886004 57886004 C A OR9I1 Missense_Mutation p.A305S 0.06 tolerated(0.09) benign(0.002) TCGA-22-1005-01 11 62288768 62288768 T A AHNAK Missense_Mutation p.K4374M 0.11 probably_damaging(0.999) TCGA-22-1005-01 11 6235650 6235650 C A FAM160A2 Missense_Mutation p.D864Y 0.05 deleterious(0) possibly_damaging(0.89) TCGA-22-1005-01 11 63137628 63137628 C A SLC22A9 Missense_Mutation p.H34N 0.03 deleterious(0.01) possibly_damaging(0.573) TCGA-22-1005-01 11 63719960 63719960 G T NAA40 Silent p.A111A 0.04 TCGA-22-1005-01 11 66101128 66101128 C A RIN1 Silent p.G531G 0.08 TCGA-22-1005-01 11 70200419 70200419 A G PPFIA1 Missense_Mutation p.R726G 0.06 tolerated(0.05) benign(0) TCGA-22-1005-01 11 73996927 73996927 G T P4HA3 Missense_Mutation p.P346H 0.06 deleterious(0) probably_damaging(0.972) TCGA-22-1005-01 11 89880596 89880596 C A NAALAD2 Missense_Mutation p.A98D 0.09 deleterious(0) probably_damaging(0.983) TCGA-22-1005-01 12 100708294 100708294 G A SCYL2 Missense_Mutation p.V333I 0.06 tolerated(0.07) benign(0.03) TCGA-22-1005-01 12 102056174 102056174 T C MYBPC1 Missense_Mutation p.W666R 0.07 deleterious(0) probably_damaging(1) TCGA-22-1005-01 12 104067805 104067805 G T STAB2 Missense_Mutation p.G831V 0.07 deleterious(0) probably_damaging(0.999) TCGA-22-1005-01 12 104376697 104376697 G T TDG Missense_Mutation p.S200I 0.07 deleterious(0) possibly_damaging(0.879) TCGA-22-1005-01 12 105455500 105455500 C T ALDH1L2 Missense_Mutation p.G318R 0.06 deleterious_low_confidence(0) probably_damaging(1) TCGA-22-1005-01 12 107114650 107114650 C A RFX4 Missense_Mutation p.S458R 0.08 deleterious(0.01) benign(0.067) TCGA-22-1005-01 12 119943043 119943043 G T CCDC60 Missense_Mutation p.S273I 0.06 tolerated(0.14) benign(0.107) TCGA-22-1005-01 12 121442210 121442210 T A C12orf43 Missense_Mutation p.S179C 0.08 tolerated(0.22) possibly_damaging(0.724) TCGA-22-1005-01 12 123950444 123950444 G T SNRNP35 Missense_Mutation p.Q124H 0.07 tolerated(0.17) probably_damaging(0.93) TCGA-22-1005-01 12 1299087 1299087 G C ERC1 Missense_Mutation p.L740F 0.09 deleterious(0) possibly_damaging(0.795) TCGA-22-1005-01 12 13717103 13717103 C T GRIN2B Silent p.L1023L 0.10 TCGA-22-1005-01 12 14924059 14924059 C T HIST4H4 5'UTR 0.06 TCGA-22-1005-01 12 24736617 24736617 C A LINC00477 RNA 0.08 TCGA-22-1005-01 12 2981281 2981281 A T FOXM1 Missense_Mutation p.L212Q 0.09 tolerated(0.23) benign(0.138) TCGA-22-1005-01 12 40345165 40345165 C A SLC2A13 Nonsense_Mutation p.G310* 0.09 TCGA-22-1005-01 12 42711684 42711684 C T ZCRB1 Missense_Mutation p.D44N 0.08 tolerated(0.08) benign(0.438) TCGA-22-1005-01 12 48737172 48737173 AG - ZNF641 Frame_Shift_Del p.F301Wfs*16 0.10 TCGA-22-1005-01 12 53201557 53201557 G C KRT4 Missense_Mutation p.A406G 0.08 tolerated(0.46) benign(0.006) TCGA-22-1005-01 12 56347929 56347929 A T PMEL 3'UTR 0.06 TCGA-22-1005-01 12 56437958 56437958 C T RPS26 3'UTR 0.11 TCGA-22-1005-01 12 57435239 57435239 T A MYO1A Missense_Mutation p.I381F 0.06 deleterious(0) probably_damaging(0.996) TCGA-22-1005-01 12 57972037 57972037 C A KIF5A Missense_Mutation p.P817H 0.08 tolerated(0.11) benign(0.031) TCGA-22-1005-01 12 6711664 6711664 C G CHD4 Splice_Site p.X34_splice 0.03 TCGA-22-1005-01 12 71002956 71002956 A T PTPRB Missense_Mutation p.I291K 0.05 tolerated_low_confidence(1) benign(0.003) TCGA-22-1005-01 12 75444293 75444293 G T KCNC2 Missense_Mutation p.P498T 0.08 deleterious(0) probably_damaging(0.961) TCGA-22-1005-01 12 78515885 78515885 C A NAV3 Missense_Mutation p.S1305R 0.07 deleterious(0.03) probably_damaging(1) TCGA-22-1005-01 12 78593307 78593307 C A NAV3 Silent p.T2215T 0.06 TCGA-22-1005-01 12 88524046 88524046 T A CEP290 Missense_Mutation p.Q223L 0.05 probably_damaging(0.998) TCGA-22-1005-01 12 936500 936500 C T WNK1 Intron 0.10 TCGA-22-1005-01 13 109707804 109707804 C A MYO16 Missense_Mutation p.P1044T 0.09 deleterious(0) probably_damaging(0.994) TCGA-22-1005-01 13 114502364 114502364 G T TMEM255B Missense_Mutation p.G132V 0.11 deleterious(0) possibly_damaging(0.899) TCGA-22-1005-01 14 103932120 103932120 A C MARK3 Missense_Mutation p.Q256P 0.07 deleterious(0) probably_damaging(0.967) TCGA-22-1005-01 14 20389257 20389257 G T OR4K5 Silent p.V164V 0.06 TCGA-22-1005-01 14 20612048 20612048 G C OR4N5 Missense_Mutation p.D52H 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-22-1005-01 14 24654162 24654162 G A IPO4 Missense_Mutation p.P478L 0.06 deleterious(0) probably_damaging(0.909) TCGA-22-1005-01 14 38723904 38723904 C A CLEC14A Missense_Mutation p.G442C 0.08 deleterious(0.01) probably_damaging(0.989) TCGA-22-1005-01 14 64447738 64447738 G T SYNE2 Missense_Mutation p.M561I 0.05 benign(0.03) TCGA-22-1005-01 14 70925962 70925962 C T ADAM21 Silent p.H582H 0.07 TCGA-22-1005-01 14 77950705 77950705 C A ISM2 Missense_Mutation p.L196F 0.06 deleterious(0.04) unknown(0) TCGA-22-1005-01 15 25415950 25415950 C A SNORD115-1 RNA 0.04 TCGA-22-1005-01 15 31295069 31295069 C A TRPM1 Silent p.T1295T 0.07 TCGA-22-1005-01 15 42585039 42585039 G A GANC Missense_Mutation p.E146K 0.04 benign(0.002) TCGA-22-1005-01 15 43552718 43552718 C A TGM5 Nonsense_Mutation p.E24* 0.11 TCGA-22-1005-01 15 45706876 45706876 G T SPATA5L1 Silent p.L514L 0.10 TCGA-22-1005-01 15 64915140 64915140 G C ZNF609 Missense_Mutation p.G288R 0.04 deleterious(0) probably_damaging(0.967) TCGA-22-1005-01 15 74709776 74709776 C T SEMA7A Silent p.V187V 0.08 TCGA-22-1005-01 15 83447603 83447603 T A FSD2 Missense_Mutation p.E342D 0.06 tolerated(0.07) benign(0.02) TCGA-22-1005-01 15 89744733 89744733 G T ABHD2 3'UTR 0.05 TCGA-22-1005-01 16 18840770 18840770 C A SMG1 Missense_Mutation p.Q3147H 0.06 deleterious(0.04) possibly_damaging(0.453) TCGA-22-1005-01 16 20565219 20565219 C A ACSM2B Missense_Mutation p.C207F 0.04 deleterious(0.01) possibly_damaging(0.597) TCGA-22-1005-01 16 23546606 23546606 G C EARS2 Missense_Mutation p.I187M 0.04 deleterious(0) probably_damaging(0.961) TCGA-22-1005-01 16 26147283 26147300 TGGACCCCGCCGGGGAAA - HS3ST4 In_Frame_Del p.D363_M368del 0.24 TCGA-22-1005-01 16 31426222 31426222 C T ITGAD Silent p.L731L 0.04 TCGA-22-1005-01 16 66946446 66946446 T C CDH16 Silent p.T440T 0.08 TCGA-22-1005-01 16 74526899 74526899 C A GLG1 Missense_Mutation p.R397M 0.15 deleterious(0) probably_damaging(0.944) TCGA-22-1005-01 16 89645265 89645265 C T CPNE7 Missense_Mutation p.P120S 0.08 tolerated(0.39) benign(0) TCGA-22-1005-01 17 10253978 10253978 C G MYH13 Missense_Mutation p.E347Q 0.12 deleterious(0) probably_damaging(0.997) TCGA-22-1005-01 17 17698002 17698002 G T RAI1 Silent p.P580P 0.09 TCGA-22-1005-01 17 29325705 29325705 G A RNF135 Silent p.L265L 0.03 TCGA-22-1005-01 17 34072980 34072980 G A GAS2L2 Silent p.P512P 0.11 TCGA-22-1005-01 17 34857031 34857031 G A MYO19 Nonsense_Mutation p.Q709* 0.10 TCGA-22-1005-01 17 38907246 38907246 A G KRT25 Missense_Mutation p.L306P 0.05 deleterious(0) probably_damaging(0.953) TCGA-22-1005-01 17 39594764 39594764 C T KRT38 Silent p.E333E 0.06 TCGA-22-1005-01 17 40317505 40317505 C T KCNH4 Missense_Mutation p.D683N 0.14 tolerated(0.17) benign(0.222) TCGA-22-1005-01 17 46804304 46804304 A G HOXB13 Missense_Mutation p.Y235H 0.10 deleterious(0) probably_damaging(0.995) TCGA-22-1005-01 17 48655878 48655878 G T CACNA1G Missense_Mutation p.A752S 0.10 deleterious(0.01) probably_damaging(0.933) TCGA-22-1005-01 17 53798410 53798410 C A TMEM100 Nonsense_Mutation p.E8* 0.08 TCGA-22-1005-01 17 73495150 73495150 C A KIAA0195 Missense_Mutation p.L1329I 0.06 tolerated(0.05) probably_damaging(0.999) TCGA-22-1005-01 17 74765954 74765954 G A MFSD11 Splice_Site p.X292_splice 0.06 TCGA-22-1005-01 17 7671236 7671236 C A DNAH2 Missense_Mutation p.Q1232K 0.08 benign(0.085) TCGA-22-1005-01 17 78073374 78073374 G T CCDC40 Missense_Mutation p.A1077S 0.05 tolerated(0.07) benign(0.117) TCGA-22-1005-01 17 7909749 7909749 G T GUCY2D Silent p.R365R 0.17 TCGA-22-1005-01 17 8131924 8131924 G A CTC1 Silent p.P1137P 0.09 TCGA-22-1005-01 17 8647921 8647921 G A CCDC42 Silent p.L3L 0.10 TCGA-22-1005-01 18 48190753 48190753 C G MAPK4 Missense_Mutation p.S142C 0.12 deleterious(0.02) probably_damaging(0.997) TCGA-22-1005-01 18 77733840 77733840 T C TXNL4A Missense_Mutation p.I92V 0.10 tolerated(1) benign(0.011) TCGA-22-1005-01 19 22940412 22940412 C A ZNF99 Missense_Mutation p.G767C 0.05 deleterious(0) probably_damaging(0.999) TCGA-22-1005-01 19 24288783 24288783 G T ZNF254 Silent p.L24L 0.05 TCGA-22-1005-01 19 2733327 2733327 C A SLC39A3 Missense_Mutation p.A123S 0.12 tolerated(0.22) possibly_damaging(0.703) TCGA-22-1005-01 19 29698600 29698600 T C UQCRFS1 Missense_Mutation p.N227S 0.04 deleterious(0.01) possibly_damaging(0.881) TCGA-22-1005-01 19 34263197 34263197 G T CHST8 Silent p.R168R 0.20 TCGA-22-1005-01 19 34890183 34890183 G A GPI Silent p.K458K 0.10 TCGA-22-1005-01 19 36033260 36033260 C A GAPDHS Missense_Mutation p.S163R 0.35 deleterious_low_confidence(0) benign(0.382) TCGA-22-1005-01 19 36223367 36223367 C T KMT2B Silent p.L1973L 0.09 TCGA-22-1005-01 19 38055978 38055978 T G ZNF571 Missense_Mutation p.E451A 0.04 deleterious(0.03) probably_damaging(0.953) TCGA-22-1005-01 19 38104057 38104057 C G ZNF540 Missense_Mutation p.Q626E 0.05 deleterious(0.02) benign(0.057) TCGA-22-1005-01 19 38104129 38104129 C A ZNF540 Missense_Mutation p.L650I 0.04 deleterious(0.01) benign(0.363) TCGA-22-1005-01 19 38798071 38798071 G T YIF1B Missense_Mutation p.F262L 0.14 deleterious(0) probably_damaging(0.98) TCGA-22-1005-01 19 38798293 38798293 G C YIF1B Silent p.V213V 0.15 TCGA-22-1005-01 19 38798304 38798304 G C YIF1B Missense_Mutation p.L210V 0.15 tolerated(0.24) benign(0.206) TCGA-22-1005-01 19 38899489 38899489 G A FAM98C Silent p.Q339Q 0.05 TCGA-22-1005-01 19 43698741 43698741 G A PSG4 Missense_Mutation p.P332S 0.12 tolerated(0.14) probably_damaging(0.999) TCGA-22-1005-01 19 44341220 44341220 A T ZNF283 Missense_Mutation p.R76W 0.10 deleterious(0) possibly_damaging(0.868) TCGA-22-1005-01 19 45157184 45157184 C A PVR Missense_Mutation p.S247Y 0.05 deleterious(0) benign(0.348) TCGA-22-1005-01 19 45157188 45157188 C T PVR Silent p.I248I 0.04 TCGA-22-1005-01 19 45157258 45157258 C G PVR Missense_Mutation p.P272A 0.05 deleterious(0) probably_damaging(1) TCGA-22-1005-01 19 45161105 45161105 C T PVR Silent p.I306I 0.16 TCGA-22-1005-01 19 45377270 45377270 C G PVRL2 Silent p.P291P 0.18 TCGA-22-1005-01 19 45397135 45397135 C - TOMM40 Frame_Shift_Del p.Q179Rfs*8 0.35 TCGA-22-1005-01 19 45762300 45762300 C T MARK4 Silent p.S35S 0.08 TCGA-22-1005-01 19 46997603 46997603 G T PNMAL2 Missense_Mutation p.Q374K 0.07 deleterious(0.01) benign(0.235) TCGA-22-1005-01 19 49132583 49132583 C T SPHK2 Silent p.A506A 0.09 TCGA-22-1005-01 19 50302885 50302885 G T AP2A1 Splice_Site p.X379_splice 0.13 TCGA-22-1005-01 19 51329900 51329900 C A KLK15 Missense_Mutation p.G199C 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-22-1005-01 19 51329936 51329936 G A KLK15 Missense_Mutation p.R187C 0.10 tolerated(0.2) benign(0.027) TCGA-22-1005-01 19 56369932 56369932 A T NLRP4 Missense_Mutation p.Q391H 0.10 deleterious(0.01) benign(0.055) TCGA-22-1005-01 19 56416351 56416351 A G NLRP13 Missense_Mutation p.C859R 0.09 tolerated(0.19) possibly_damaging(0.719) TCGA-22-1005-01 19 57326548 57326548 C A PEG3 Missense_Mutation p.V1088F 0.06 tolerated(0.62) benign(0.37) TCGA-22-1005-01 19 58437494 58437494 C A ZNF418 3'UTR 0.09 TCGA-22-1005-01 1 109779976 109779976 G A SARS Silent p.L456L 0.07 TCGA-22-1005-01 1 110085756 110085756 G C GPR61 Missense_Mutation p.D38H 0.07 deleterious(0.01) possibly_damaging(0.758) TCGA-22-1005-01 1 11807574 11807574 A T AGTRAP Missense_Mutation p.Q47L 0.04 deleterious(0) probably_damaging(0.992) TCGA-22-1005-01 1 144879523 144879523 C A PDE4DIP Missense_Mutation p.M1309I 0.04 tolerated(0.19) benign(0.073) TCGA-22-1005-01 1 151681819 151681819 G A CELF3 Missense_Mutation p.R95W 0.12 deleterious(0) possibly_damaging(0.828) TCGA-22-1005-01 1 152276900 152276900 G C FLG Missense_Mutation p.Q3488E 0.11 unknown(0) TCGA-22-1005-01 1 152760258 152760258 T C LCE1E 3'UTR 0.15 TCGA-22-1005-01 1 155698844 155698844 A G DAP3 Silent p.Q205Q 0.10 TCGA-22-1005-01 1 156641118 156641118 C A NES Silent p.T954T 0.09 TCGA-22-1005-01 1 158725027 158725027 G A OR6K6 Missense_Mutation p.C141Y 0.07 tolerated(1) benign(0.009) TCGA-22-1005-01 1 160523937 160523937 C T CD84 Splice_Site p.X130_splice 0.13 TCGA-22-1005-01 1 161200485 161200485 C A NR1I3 Intron 0.20 TCGA-22-1005-01 1 171174690 171174690 C A FMO2 Missense_Mutation p.A367E 0.11 deleterious(0) probably_damaging(0.925) TCGA-22-1005-01 1 182853914 182853914 G A DHX9 Missense_Mutation p.A1143T 0.07 tolerated(0.12) benign(0.026) TCGA-22-1005-01 1 197128962 197128962 C A ZBTB41 Missense_Mutation p.D753Y 0.08 tolerated(0.06) possibly_damaging(0.643) TCGA-22-1005-01 1 201437638 201437638 C A PHLDA3 Missense_Mutation p.G93C 0.04 tolerated(0.56) probably_damaging(0.923) TCGA-22-1005-01 1 20466691 20466691 T C PLA2G2F Missense_Mutation p.V50A 0.09 tolerated(0.18) benign(0.075) TCGA-22-1005-01 1 204942540 204942540 T G NFASC Missense_Mutation p.S424R 0.10 deleterious(0) probably_damaging(0.999) TCGA-22-1005-01 1 216138692 216138692 C A USH2A Missense_Mutation p.V2363F 0.06 possibly_damaging(0.891) TCGA-22-1005-01 1 223971854 223971854 T C TP53BP2 Missense_Mutation p.N1109S 0.06 tolerated(0.22) benign(0) TCGA-22-1005-01 1 237778077 237778077 C T RYR2 Silent p.A1883A 0.06 TCGA-22-1005-01 1 240072245 240072245 T A CHRM3 Silent p.L498L 0.08 TCGA-22-1005-01 1 243349113 243349113 C A CEP170 Nonsense_Mutation p.E512* 0.03 TCGA-22-1005-01 1 247607318 247607318 C A NLRP3 Missense_Mutation p.S905Y 0.10 deleterious(0) possibly_damaging(0.707) TCGA-22-1005-01 1 247769218 247769218 G T OR2G3 Nonsense_Mutation p.E111* 0.03 TCGA-22-1005-01 1 247875427 247875427 A G OR6F1 Missense_Mutation p.C211R 0.05 deleterious(0) probably_damaging(0.926) TCGA-22-1005-01 1 248039216 248039216 G C TRIM58 Missense_Mutation p.D296H 0.06 deleterious(0) probably_damaging(1) TCGA-22-1005-01 1 248129248 248129248 G A OR2AK2 Silent p.Q205Q 0.04 TCGA-22-1005-01 1 248436943 248436943 G A OR2T33 Silent p.Y58Y 0.06 TCGA-22-1005-01 1 248790351 248790351 C T OR2T11 Missense_Mutation p.V27M 0.08 tolerated(0.24) benign(0.276) TCGA-22-1005-01 1 43909434 43909434 T G SZT2 Missense_Mutation p.L2874R 0.07 deleterious(0.03) probably_damaging(0.999) TCGA-22-1005-01 1 46494492 46494492 A G MAST2 Missense_Mutation p.Y702C 0.11 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-22-1005-01 1 52896972 52896972 T C ZCCHC11 Missense_Mutation p.Y1475C 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-22-1005-01 1 53712720 53712720 T G LRP8 Silent p.A954A 0.07 TCGA-22-1005-01 1 8617562 8617562 G A RERE Silent p.L181L 0.05 TCGA-22-1005-01 20 1162009 1162009 G A TMEM74B Missense_Mutation p.P85L 0.09 deleterious(0.01) benign(0.357) TCGA-22-1005-01 20 33805758 33805758 G T AL121753.1 3'Flank 0.07 TCGA-22-1005-01 20 34828375 34828375 A T AAR2 Silent p.L195L 0.07 TCGA-22-1005-01 20 44673700 44673700 G C SLC12A5 Missense_Mutation p.G520A 0.09 deleterious(0.02) probably_damaging(1) TCGA-22-1005-01 20 44674627 44674627 C A SLC12A5 Silent p.I583I 0.07 TCGA-22-1005-01 20 47266657 47266657 G T PREX1 Missense_Mutation p.P969T 0.10 deleterious(0) probably_damaging(0.986) TCGA-22-1005-01 20 50133366 50133366 C T NFATC2 Missense_Mutation p.R430Q 0.06 deleterious(0) probably_damaging(0.986) TCGA-22-1005-01 20 60990641 60990641 G A RBBP8NL Missense_Mutation p.P207L 0.05 tolerated(0.38) benign(0.063) TCGA-22-1005-01 20 61439571 61439571 C T OGFR Intron 0.12 TCGA-22-1005-01 20 62174685 62174685 C T SRMS Silent p.L209L 0.10 TCGA-22-1005-01 21 10933879 10933879 C T TPTE Missense_Mutation p.V334I 0.03 tolerated(1) benign(0.02) TCGA-22-1005-01 21 39671908 39671908 C G KCNJ15 Missense_Mutation p.S242C 0.05 deleterious(0.03) probably_damaging(0.979) TCGA-22-1005-01 22 16449182 16449182 G T OR11H1 Missense_Mutation p.P208Q 0.11 deleterious(0) probably_damaging(0.98) TCGA-22-1005-01 22 30125103 30125103 C A CABP7 Nonsense_Mutation p.C142* 0.19 TCGA-22-1005-01 22 30858111 30858111 G T SEC14L3 Missense_Mutation p.L245M 0.07 tolerated(1) benign(0.001) TCGA-22-1005-01 22 32108185 32108185 C A PRR14L Silent p.S1880S 0.06 TCGA-22-1005-01 22 32587221 32587221 G A RFPL2 Silent p.D225D 0.06 TCGA-22-1005-01 2 108489217 108489217 G T RGPD4 Missense_Mutation p.S1586I 0.06 deleterious(0.03) benign(0.005) TCGA-22-1005-01 2 125555700 125555700 C A CNTNAP5 Missense_Mutation p.T1006K 0.09 deleterious(0.01) possibly_damaging(0.644) TCGA-22-1005-01 2 128018841 128018841 C A ERCC3 Missense_Mutation p.R676L 0.08 deleterious(0) probably_damaging(0.984) TCGA-22-1005-01 2 128238746 128238746 C T IWS1 Silent p.Q778Q 0.10 TCGA-22-1005-01 2 131521011 131521011 C A AMER3 Missense_Mutation p.P456T 0.08 deleterious(0) probably_damaging(0.993) TCGA-22-1005-01 2 15427298 15427298 C A NBAS Missense_Mutation p.E1679D 0.09 tolerated(0.5) benign(0.036) TCGA-22-1005-01 2 158272486 158272486 G A CYTIP Silent p.Y261Y 0.06 TCGA-22-1005-01 2 166898935 166898935 C A SCN1A Splice_Site p.X682_splice 0.06 TCGA-22-1005-01 2 175957791 175957791 G T ATF2 Missense_Mutation p.Q395K 0.06 deleterious(0.03) probably_damaging(0.994) TCGA-22-1005-01 2 189975041 189975041 C G COL5A2 Missense_Mutation p.D78H 0.04 probably_damaging(0.971) TCGA-22-1005-01 2 191301526 191301526 G T MFSD6 Missense_Mutation p.K257N 0.08 tolerated(0.59) benign(0) TCGA-22-1005-01 2 1926587 1926587 G T MYT1L Missense_Mutation p.S318R 0.08 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-22-1005-01 2 211457669 211457669 A G CPS1 Missense_Mutation p.I391V 0.04 tolerated(0.46) benign(0) TCGA-22-1005-01 2 220309447 220309447 C A SPEG Missense_Mutation p.A154D 0.09 benign(0.001) TCGA-22-1005-01 2 224463651 224463651 G A SCG2 Missense_Mutation p.A117V 0.06 deleterious(0.01) probably_damaging(0.995) TCGA-22-1005-01 2 227659713 227659713 A C IRS1 3'UTR 0.07 TCGA-22-1005-01 2 241659332 241659332 G T KIF1A Missense_Mutation p.P1627H 0.11 deleterious(0.03) possibly_damaging(0.804) TCGA-22-1005-01 2 27454412 27454412 G C CAD Silent p.V788V 0.08 TCGA-22-1005-01 2 27500686 27500686 T C DNAJC5G Missense_Mutation p.Y60H 0.05 tolerated(0.14) probably_damaging(1) TCGA-22-1005-01 2 29355067 29355067 T C CLIP4 Missense_Mutation p.M108T 0.08 deleterious(0) possibly_damaging(0.672) TCGA-22-1005-01 2 39944229 39944229 T C TMEM178A Silent p.Y244Y 0.07 TCGA-22-1005-01 2 74753881 74753881 C G AUP1 3'UTR 0.09 TCGA-22-1005-01 2 88407899 88407899 C A SMYD1 Nonsense_Mutation p.Y385* 0.08 TCGA-22-1005-01 2 9595844 9595844 G T CPSF3 Missense_Mutation p.G521C 0.07 tolerated(0.18) benign(0.179) TCGA-22-1005-01 2 9595845 9595845 G T CPSF3 Missense_Mutation p.G521V 0.06 tolerated(0.77) benign(0.098) TCGA-22-1005-01 2 98736077 98736077 G A VWA3B Silent p.R131R 0.07 TCGA-22-1005-01 3 100951768 100951768 C A IMPG2 Missense_Mutation p.W1030C 0.05 deleterious(0) probably_damaging(0.976) TCGA-22-1005-01 3 102157427 102157427 T C ZPLD1 Silent p.S48S 0.09 TCGA-22-1005-01 3 121155113 121155113 G C POLQ Missense_Mutation p.Q2467E 0.07 deleterious(0) probably_damaging(0.999) TCGA-22-1005-01 3 122334523 122334523 C G PARP15 Intron 0.05 TCGA-22-1005-01 3 139071620 139071620 G T MRPS22 Missense_Mutation p.Q288H 0.05 deleterious(0.01) probably_damaging(0.957) TCGA-22-1005-01 3 141164431 141164431 C T ZBTB38 Silent p.V1067V 0.05 TCGA-22-1005-01 3 142408614 142408614 A G PLS1 Missense_Mutation p.H379R 0.06 tolerated(0.45) benign(0.001) TCGA-22-1005-01 3 178921417 178921417 A T PIK3CA Missense_Mutation p.D300V 0.07 tolerated(0.52) benign(0.001) TCGA-22-1005-01 3 179470092 179470092 T G USP13 Missense_Mutation p.F577V 0.06 deleterious(0) probably_damaging(0.916) TCGA-22-1005-01 3 183858277 183858277 G C EIF2B5 Missense_Mutation p.M305I 0.06 deleterious(0.04) benign(0.005) TCGA-22-1005-01 3 184714255 184714255 C G VPS8 Missense_Mutation p.R1268G 0.09 tolerated(0.06) benign(0.002) TCGA-22-1005-01 3 197404400 197404400 G A KIAA0226 Nonsense_Mutation p.Q815* 0.06 TCGA-22-1005-01 3 197503841 197503841 A G FYTTD1 Missense_Mutation p.I234V 0.09 deleterious(0.01) benign(0.277) TCGA-22-1005-01 3 3084097 3084097 A G CNTN4 Silent p.Q834Q 0.09 TCGA-22-1005-01 3 33099717 33099717 G A GLB1 Silent p.Y199Y 0.12 TCGA-22-1005-01 3 35833976 35833976 C G ARPP21 Missense_Mutation p.P713R 0.07 deleterious(0.02) benign(0.1) TCGA-22-1005-01 3 4847845 4847845 G A ITPR1 Missense_Mutation p.R2374K 0.06 tolerated(0.51) possibly_damaging(0.549) TCGA-22-1005-01 3 97499518 97499518 A G ARL6 Missense_Mutation p.H82R 0.11 tolerated(0.21) benign(0.03) TCGA-22-1005-01 4 123329116 123329116 G T ADAD1 Missense_Mutation p.D260Y 0.10 tolerated(1) benign(0.389) TCGA-22-1005-01 4 123843718 123843718 G A NUDT6 Missense_Mutation p.P4S 0.12 tolerated_low_confidence(0.63) benign(0) TCGA-22-1005-01 4 1808342 1808342 G T FGFR3 Silent p.V702V 0.13 TCGA-22-1005-01 4 187004777 187004777 C T TLR3 Missense_Mutation p.P646L 0.10 deleterious(0) probably_damaging(1) TCGA-22-1005-01 4 84026139 84026139 C A PLAC8 Silent p.G51G 0.08 TCGA-22-1005-01 4 85605137 85605137 G A WDFY3 Nonsense_Mutation p.Q3229* 0.06 TCGA-22-1005-01 5 102488374 102488374 G T PPIP5K2 Missense_Mutation p.A351S 0.07 deleterious(0.02) possibly_damaging(0.853) TCGA-22-1005-01 5 138658638 138658638 A G MATR3 Silent p.A710A 0.05 TCGA-22-1005-01 5 140698934 140698934 G A TAF7 Silent p.L226L 0.04 TCGA-22-1005-01 5 140801333 140801333 C G PCDHGA11 Missense_Mutation p.S180C 0.07 deleterious_low_confidence(0) possibly_damaging(0.604) TCGA-22-1005-01 5 147820745 147820745 A G FBXO38 Silent p.L1036L 0.04 TCGA-22-1005-01 5 16067667 16067667 C A MARCH11 Missense_Mutation p.L374F 0.08 deleterious(0.05) benign(0.071) TCGA-22-1005-01 5 161116272 161116272 T A GABRA6 Missense_Mutation p.N153K 0.04 tolerated(0.43) probably_damaging(0.998) TCGA-22-1005-01 5 162939008 162939008 G T MAT2B Nonsense_Mutation p.E22* 0.06 TCGA-22-1005-01 5 177546693 177546693 C T N4BP3 Missense_Mutation p.R37W 0.08 deleterious(0) possibly_damaging(0.704) TCGA-22-1005-01 5 178505923 178505923 G T ZNF354C Nonsense_Mutation p.E164* 0.06 TCGA-22-1005-01 5 180582261 180582261 T G OR2V2 Missense_Mutation p.C107G 0.06 tolerated(0.08) benign(0.027) TCGA-22-1005-01 5 33461790 33461790 A G TARS Missense_Mutation p.N557D 0.12 tolerated(0.73) benign(0.003) TCGA-22-1005-01 5 33614402 33614402 T C ADAMTS12 Missense_Mutation p.Q823R 0.14 tolerated(0.23) benign(0.001) TCGA-22-1005-01 5 33637758 33637758 C A ADAMTS12 Silent p.R604R 0.10 TCGA-22-1005-01 5 52096801 52096801 G A PELO Silent p.Q191Q 0.05 TCGA-22-1005-01 5 58882155 58882155 C A PDE4D Intron 0.06 TCGA-22-1005-01 5 63257406 63257406 G T HTR1A Silent p.I47I 0.11 TCGA-22-1005-01 5 76342243 76342243 A T AGGF1 Silent p.A314A 0.07 TCGA-22-1005-01 5 79616037 79616037 G T SPZ1 Translation_Start_Site p.M1? 0.07 tolerated(0.14) benign(0.002) TCGA-22-1005-01 5 9224880 9224880 G T SEMA5A Silent p.A184A 0.14 TCGA-22-1005-01 6 108192907 108192907 C T SEC63 3'UTR 0.04 TCGA-22-1005-01 6 146720066 146720066 T A GRM1 Missense_Mutation p.C631S 0.04 tolerated(0.33) possibly_damaging(0.68) TCGA-22-1005-01 6 146755257 146755257 G A GRM1 Silent p.P970P 0.07 TCGA-22-1005-01 6 151161944 151161944 T A PLEKHG1 Missense_Mutation p.L1357H 0.08 deleterious(0) probably_damaging(0.969) TCGA-22-1005-01 6 15523168 15523168 T C DTNBP1 3'UTR 0.06 TCGA-22-1005-01 6 27114380 27114380 G A HIST1H2BK Silent p.F66F 0.10 TCGA-22-1005-01 6 28116593 28116593 A T ZKSCAN8 Silent p.L136L 0.08 TCGA-22-1005-01 6 28195519 28195519 C G ZSCAN9 Missense_Mutation p.L158V 0.10 tolerated(0.44) benign(0.004) TCGA-22-1005-01 6 29408490 29408490 G T OR10C1 Missense_Mutation p.R233L 0.08 deleterious(0) probably_damaging(0.984) TCGA-22-1005-01 6 29408493 29408493 G T OR10C1 Missense_Mutation p.R234L 0.07 tolerated(0.34) benign(0.008) TCGA-22-1005-01 6 29624960 29624960 G T MOG 5'Flank 0.11 TCGA-22-1005-01 6 31113051 31113051 C T CCHCR1 Missense_Mutation p.V590M 0.13 tolerated(0.25) benign(0.02) TCGA-22-1005-01 6 31901497 31901497 G T CFB Missense_Mutation p.G123W 0.07 deleterious(0) possibly_damaging(0.472) TCGA-22-1005-01 6 33151977 33151977 C A COL11A2 Intron 0.08 TCGA-22-1005-01 6 35477076 35477076 G A TULP1 Silent p.G244G 0.08 TCGA-22-1005-01 6 38770995 38770995 G C DNAH8 Missense_Mutation p.S764T 0.06 benign(0.115) TCGA-22-1005-01 6 43305308 43305308 G A ZNF318 Missense_Mutation p.S2143F 0.05 benign(0.022) TCGA-22-1005-01 6 49754864 49754864 C A PGK2 Missense_Mutation p.D13Y 0.08 deleterious(0) unknown(0) TCGA-22-1005-01 6 54214526 54214526 C A TINAG Missense_Mutation p.H304Q 0.05 tolerated(0.16) probably_damaging(0.985) TCGA-22-1005-01 6 72945382 72945382 A G RIMS1 Missense_Mutation p.N603S 0.10 tolerated(0.38) possibly_damaging(0.644) TCGA-22-1005-01 6 7883465 7883465 C A TXNDC5 Missense_Mutation p.G404V 0.07 deleterious(0.03) possibly_damaging(0.826) TCGA-22-1005-01 6 84627747 84627747 A G CYB5R4 Missense_Mutation p.T157A 0.05 tolerated(0.87) benign(0.001) TCGA-22-1005-01 6 90468674 90468674 T G MDN1 Silent p.T822T 0.07 TCGA-22-1005-01 7 103281044 103281044 G C RELN Missense_Mutation p.P672R 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-22-1005-01 7 103341367 103341367 C G RELN Missense_Mutation p.E298Q 0.08 tolerated(0.32) benign(0.042) TCGA-22-1005-01 7 107678003 107678003 C A LAMB4 Silent p.A1503A 0.09 TCGA-22-1005-01 7 107807478 107807478 C A NRCAM Silent p.R1118R 0.11 TCGA-22-1005-01 7 108524082 108524082 T A C7orf66 Silent p.P110P 0.11 TCGA-22-1005-01 7 134925332 134925332 C A STRA8 Missense_Mutation p.P41Q 0.05 tolerated(0.5) benign(0.012) TCGA-22-1005-01 7 136699684 136699684 G T CHRM2 Silent p.V24V 0.09 TCGA-22-1005-01 7 137271925 137271925 A G DGKI Missense_Mutation p.L448P 0.05 deleterious(0.01) probably_damaging(1) TCGA-22-1005-01 7 138453574 138453574 A T ATP6V0A4 Missense_Mutation p.L81H 0.05 tolerated(0.59) possibly_damaging(0.617) TCGA-22-1005-01 7 142231788 142231788 G T TRBV10-1 Missense_Mutation p.H43Q 0.07 tolerated(0.24) benign(0.076) TCGA-22-1005-01 7 143657246 143657246 C A OR2F1 Missense_Mutation p.F61L 0.08 deleterious(0) benign(0.076) TCGA-22-1005-01 7 152345822 152345822 T C XRCC2 Missense_Mutation p.S250G 0.08 tolerated(0.23) benign(0.001) TCGA-22-1005-01 7 20698292 20698292 T G ABCB5 Missense_Mutation p.L567R 0.13 deleterious(0) probably_damaging(1) TCGA-22-1005-01 7 38500976 38500976 T A AMPH Missense_Mutation p.K308N 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-22-1005-01 7 45930156 45930156 G T IGFBP1 Missense_Mutation p.S120I 0.04 tolerated(0.18) benign(0.03) TCGA-22-1005-01 7 62752866 62752866 A T ZNF733P RNA 0.09 TCGA-22-1005-01 7 66420584 66420584 G T TMEM248 3'UTR 0.10 TCGA-22-1005-01 7 72398926 72398926 C G POM121 Silent p.R77R 0.07 TCGA-22-1005-01 7 72957941 72957941 G C BCL7B Missense_Mutation p.R68G 0.06 tolerated(0.21) possibly_damaging(0.586) TCGA-22-1005-01 7 84666206 84666206 G T SEMA3D Missense_Mutation p.T397K 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-22-1005-01 7 86800345 86800345 G T DMTF1 Missense_Mutation p.M89I 0.06 deleterious(0) possibly_damaging(0.476) TCGA-22-1005-01 7 87020954 87020954 C T CROT Missense_Mutation p.R479C 0.08 deleterious(0) probably_damaging(1) TCGA-22-1005-01 7 92838019 92838019 C A HEPACAM2 Missense_Mutation p.G296W 0.11 deleterious(0) probably_damaging(1) TCGA-22-1005-01 8 10464647 10464647 C T RP1L1 Missense_Mutation p.G2321R 0.07 unknown(0) TCGA-22-1005-01 8 11412366 11412366 C T BLK Missense_Mutation p.P196L 0.06 deleterious(0.04) benign(0.338) TCGA-22-1005-01 8 128428501 128428501 G A POU5F1B Silent p.E130E 0.16 TCGA-22-1005-01 8 42585842 42585842 G A CHRNB3 Missense_Mutation p.E119K 0.09 deleterious(0.02) benign(0.042) TCGA-22-1005-01 8 42919330 42919330 G T FNTA Nonsense_Mutation p.E125* 0.06 TCGA-22-1005-01 8 55539990 55539990 T C RP1 Missense_Mutation p.V1183A 0.10 deleterious(0) possibly_damaging(0.628) TCGA-22-1005-01 8 59404284 59404284 G A CYP7A1 Missense_Mutation p.T422I 0.04 tolerated(0.1) benign(0.046) TCGA-22-1005-01 8 67061911 67061911 G T TRIM55 Missense_Mutation p.C212F 0.11 deleterious(0) probably_damaging(0.999) TCGA-22-1005-01 8 87241909 87241909 C G SLC7A13 Missense_Mutation p.E200Q 0.17 deleterious(0.01) possibly_damaging(0.588) TCGA-22-1005-01 8 94740445 94740445 C A FAM92A1 Silent p.R264R 0.20 TCGA-22-1005-01 9 117849420 117849420 C G TNC Missense_Mutation p.R197P 0.08 deleterious(0) possibly_damaging(0.448) TCGA-22-1005-01 9 130482407 130482407 C T TTC16 Silent p.F159F 0.06 TCGA-22-1005-01 9 131010887 131010887 C T DNM1 Missense_Mutation p.S644F 0.06 deleterious(0.01) benign(0.108) TCGA-22-1005-01 9 140919528 140919528 G A CACNA1B Missense_Mutation p.V1064I 0.09 tolerated(0.2) benign(0.126) TCGA-22-1005-01 9 2081837 2081837 G C SMARCA2 Missense_Mutation p.Q730H 0.11 benign(0.161) TCGA-22-1005-01 9 34977114 34977114 G A KIAA1045 Missense_Mutation p.R295Q 0.06 tolerated(0.23) probably_damaging(0.998) TCGA-22-1005-01 9 36677355 36677355 G C MELK 3'UTR 0.13 TCGA-22-1005-01 9 72472881 72472881 A C C9orf135 Missense_Mutation p.D146A 0.09 deleterious(0) benign(0.439) TCGA-22-1005-01 9 97087978 97087978 C T NUTM2F Missense_Mutation p.M85I 0.08 tolerated(0.06) benign(0.005) TCGA-22-1005-01 X 110439865 110439865 C T PAK3 Silent p.L504L 0.05 TCGA-22-1005-01 X 111195296 111195296 T G TRPC5 Missense_Mutation p.Y118S 0.16 deleterious(0.03) benign(0.21) TCGA-22-1005-01 X 118602448 118602448 C A SLC25A5 5'UTR 0.33 TCGA-22-1005-01 X 14627248 14627248 C A GLRA2 Missense_Mutation p.P284H 0.06 deleterious(0) benign(0.443) TCGA-22-1005-01 X 155227284 155227284 G A IL9R 5'UTR 0.14 TCGA-22-1005-01 X 3228886 3228886 C A MXRA5 Missense_Mutation p.R2453L 0.06 deleterious(0) possibly_damaging(0.889) TCGA-22-1005-01 X 3240823 3240823 G C MXRA5 Missense_Mutation p.S968C 0.24 tolerated(0.17) possibly_damaging(0.533) TCGA-22-1005-01 X 48386627 48386627 A T EBP Missense_Mutation p.I159F 0.14 tolerated(0.15) benign(0.014) TCGA-22-1005-01 X 53224138 53224138 T G KDM5C Missense_Mutation p.Q1138P 0.18 deleterious(0.04) possibly_damaging(0.866) TCGA-22-1005-01 X 70783081 70783081 T A OGT Missense_Mutation p.D750E 0.15 tolerated(0.83) benign(0.001) TCGA-22-1005-01 X 83126463 83126463 G T CYLC1 Missense_Mutation p.S21I 0.16 tolerated(0.27) benign(0.181) TCGA-22-1005-01 Y 14869191 14869191 G T USP9Y Missense_Mutation p.D498Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-22-1011-01 10 34759074 34759074 G C PARD3 Nonsense_Mutation p.S174* 0.17 TCGA-22-1011-01 10 96039545 96039545 C T PLCE1 Nonsense_Mutation p.Q1558* 0.19 TCGA-22-1011-01 11 10820951 10820951 C G EIF4G2 Missense_Mutation p.S782T 0.10 tolerated(0.62) benign(0.002) TCGA-22-1011-01 11 116730126 116730126 C T SIK3 Missense_Mutation p.A768T 0.14 tolerated_low_confidence(0.07) benign(0.002) TCGA-22-1011-01 11 14793552 14793552 T G PDE3B Intron 0.12 TCGA-22-1011-01 11 5221326 5221326 C G OR51V1 Missense_Mutation p.R202P 0.10 deleterious(0.01) probably_damaging(0.962) TCGA-22-1011-01 11 64940229 64940229 C T SPDYC Silent p.V197V 0.15 TCGA-22-1011-01 11 64940371 64940371 C T SPDYC Missense_Mutation p.H245Y 0.10 tolerated(0.34) benign(0.001) TCGA-22-1011-01 11 65835421 65835421 G C SF3B2 Missense_Mutation p.E779Q 0.19 tolerated(0.08) probably_damaging(0.925) TCGA-22-1011-01 11 6913340 6913340 C T OR2D2 Missense_Mutation p.R131H 0.10 tolerated(1) benign(0.001) TCGA-22-1011-01 11 92534482 92534482 A G FAT3 Missense_Mutation p.D2768G 0.18 benign(0.313) TCGA-22-1011-01 12 108145615 108145615 G A PRDM4 Silent p.L235L 0.14 TCGA-22-1011-01 12 109895804 109895804 G T KCTD10 Nonsense_Mutation p.S156* 0.17 TCGA-22-1011-01 12 40010967 40010967 C G ABCD2 Missense_Mutation p.E315Q 0.08 deleterious(0) probably_damaging(1) TCGA-22-1011-01 12 86199520 86199520 G A RASSF9 Missense_Mutation p.L90F 0.23 deleterious(0) probably_damaging(1) TCGA-22-1011-01 13 33704299 33704299 G A STARD13 Missense_Mutation p.P172L 0.27 tolerated(0.08) benign(0.001) TCGA-22-1011-01 14 100793708 100793708 G A SLC25A47 Splice_Site p.X109_splice 0.12 TCGA-22-1011-01 14 102552590 102552590 C G HSP90AA1 Missense_Mutation p.E164D 0.09 tolerated_low_confidence(0.12) benign(0.377) TCGA-22-1011-01 14 102552599 102552599 C G HSP90AA1 Silent p.S161S 0.10 TCGA-22-1011-01 14 61190296 61190296 T C SIX4 Missense_Mutation p.Y166C 0.08 deleterious(0) probably_damaging(0.995) TCGA-22-1011-01 14 62249063 62249063 G C SNAPC1 Missense_Mutation p.E308D 0.06 deleterious(0.02) benign(0.03) TCGA-22-1011-01 14 62249095 62249095 A C SNAPC1 Missense_Mutation p.K319T 0.08 tolerated(0.11) benign(0.007) TCGA-22-1011-01 14 69792679 69792679 C T GALNT16 Missense_Mutation p.P168L 0.10 deleterious(0.03) benign(0.007) TCGA-22-1011-01 15 35202438 35202438 C T AQR Missense_Mutation p.E521K 0.13 deleterious(0.02) possibly_damaging(0.905) TCGA-22-1011-01 15 55838974 55838974 G A PYGO1 Silent p.V169V 0.15 TCGA-22-1011-01 15 72338533 72338533 C T MYO9A Nonsense_Mutation p.W124* 0.18 TCGA-22-1011-01 15 85664067 85664067 G A PDE8A Missense_Mutation p.A592T 0.25 deleterious(0) probably_damaging(0.967) TCGA-22-1011-01 16 15027039 15027039 C T NPIPA1 5'Flank 0.27 TCGA-22-1011-01 16 21262054 21262054 G A ANKS4B Silent p.L389L 0.18 TCGA-22-1011-01 16 23391849 23391849 C T SCNN1B Silent p.I550I 0.12 TCGA-22-1011-01 16 31150455 31150455 C T PRSS36 3'UTR 0.12 TCGA-22-1011-01 16 4431778 4431778 C T VASN Silent p.F300F 0.13 TCGA-22-1011-01 16 46694409 46694409 G T VPS35 Missense_Mutation p.P789Q 0.12 tolerated(0.21) benign(0.047) TCGA-22-1011-01 16 51175080 51175080 C T SALL1 Silent p.P351P 0.23 TCGA-22-1011-01 16 66785512 66785512 C A DYNC1LI2 5'UTR 0.23 TCGA-22-1011-01 16 70166157 70166157 G C PDPR Missense_Mutation p.K317N 0.07 tolerated(0.4) benign(0.388) TCGA-22-1011-01 16 71803595 71803595 G C AP1G1 Silent p.L191L 0.10 TCGA-22-1011-01 16 777524 777524 C T HAGHL Silent p.V5V 0.23 TCGA-22-1011-01 16 81934360 81934360 A T PLCG2 Missense_Mutation p.Q446L 0.20 deleterious(0) probably_damaging(0.991) TCGA-22-1011-01 17 57093108 57093108 C G TRIM37 Missense_Mutation p.L813F 0.25 deleterious_low_confidence(0.03) probably_damaging(0.945) TCGA-22-1011-01 17 7577127 7577127 C T TP53 Missense_Mutation p.E271K 0.17 deleterious(0) probably_damaging(0.999) TCGA-22-1011-01 17 7678646 7678646 G C DNAH2 Missense_Mutation p.E1603Q 0.24 possibly_damaging(0.704) TCGA-22-1011-01 18 22932013 22932013 T C ZNF521 5'UTR 0.23 TCGA-22-1011-01 18 7080394 7080394 C G LAMA1 Missense_Mutation p.G42R 0.23 deleterious(0) probably_damaging(1) TCGA-22-1011-01 19 18329162 18329162 C T PDE4C Silent p.L404L 0.13 TCGA-22-1011-01 19 35649254 35649254 C G FXYD5 Silent p.V50V 0.11 TCGA-22-1011-01 19 36832035 36832035 C G ZFP14 Missense_Mutation p.K231N 0.16 tolerated(0.1) probably_damaging(0.999) TCGA-22-1011-01 19 37966894 37966894 A T ZNF570 Missense_Mutation p.I49F 0.17 deleterious(0.03) benign(0.255) TCGA-22-1011-01 19 38055940 38055940 G C ZNF571 Missense_Mutation p.Q464E 0.14 tolerated(0.27) possibly_damaging(0.585) TCGA-22-1011-01 19 38056864 38056864 G C ZNF571 Missense_Mutation p.Q156E 0.19 tolerated(0.76) benign(0.001) TCGA-22-1011-01 19 40541731 40541731 C G ZNF780B Silent p.L345L 0.10 TCGA-22-1011-01 19 40928838 40928838 C T SERTAD1 Missense_Mutation p.E206K 0.08 tolerated(0.41) benign(0.024) TCGA-22-1011-01 19 40993680 40993680 C T SPTBN4 Silent p.I82I 0.15 TCGA-22-1011-01 19 43420433 43420433 C G PSG6 Missense_Mutation p.G91R 0.13 deleterious(0) probably_damaging(0.998) TCGA-22-1011-01 19 7676774 7676774 C A CAMSAP3 Silent p.I492I 0.11 TCGA-22-1011-01 1 100346221 100346221 G C AGL Missense_Mutation p.G590A 0.22 deleterious(0.01) probably_damaging(0.986) TCGA-22-1011-01 1 20249215 20249215 C G PLA2G2E Missense_Mutation p.G25A 0.12 tolerated(0.3) benign(0.429) TCGA-22-1011-01 1 214557127 214557127 G C PTPN14 Missense_Mutation p.Q691E 0.19 tolerated(0.69) benign(0.004) TCGA-22-1011-01 1 222923481 222923481 C T FAM177B 3'UTR 0.12 TCGA-22-1011-01 1 229434748 229434748 C T RAB4A Missense_Mutation p.A157V 0.13 deleterious(0) probably_damaging(0.991) TCGA-22-1011-01 1 242451818 242451818 T C PLD5 Missense_Mutation p.E114G 0.09 deleterious(0) probably_damaging(0.999) TCGA-22-1011-01 20 33589814 33589814 G C MYH7B Missense_Mutation p.E1956Q 0.17 benign(0.187) TCGA-22-1011-01 22 22277234 22277234 C G PPM1F 3'UTR 0.19 TCGA-22-1011-01 22 22657664 22657664 T C BMS1P20 Splice_Site 0.11 TCGA-22-1011-01 22 29692264 29692264 C G EWSR1 Missense_Mutation p.I405M 0.19 deleterious(0.04) unknown(0) TCGA-22-1011-01 2 141816564 141816564 A T LRP1B Missense_Mutation p.D432E 0.18 benign(0.417) TCGA-22-1011-01 2 20840770 20840770 G A HS1BP3 Silent p.A123A 0.15 TCGA-22-1011-01 2 210889937 210889937 C G KANSL1L Missense_Mutation p.E819Q 0.16 deleterious(0.04) probably_damaging(0.996) TCGA-22-1011-01 2 25965491 25965491 C G ASXL2 Missense_Mutation p.E1239Q 0.10 tolerated(0.61) benign(0.049) TCGA-22-1011-01 2 33518261 33518261 A T LTBP1 Silent p.A1049A 0.16 TCGA-22-1011-01 2 44031784 44031784 C A DYNC2LI1 Missense_Mutation p.S269Y 0.17 tolerated(0.49) benign(0.083) TCGA-22-1011-01 2 55571645 55571645 T A CCDC88A Missense_Mutation p.L349F 0.19 deleterious(0) probably_damaging(0.991) TCGA-22-1011-01 2 67637061 67637061 G C ETAA1 Missense_Mutation p.R891T 0.12 deleterious(0) probably_damaging(0.928) TCGA-22-1011-01 2 67637099 67637099 G C ETAA1 Missense_Mutation p.E904Q 0.16 deleterious(0.01) probably_damaging(0.96) TCGA-22-1011-01 2 74684855 74684855 C G INO80B Missense_Mutation p.P312R 0.08 tolerated(0.14) probably_damaging(0.998) TCGA-22-1011-01 2 79386542 79386542 A C REG3A 5'UTR 0.09 TCGA-22-1011-01 2 90229383 90229383 T A IGKV1D-42 Missense_Mutation p.L68H 0.17 deleterious(0.02) probably_damaging(0.977) TCGA-22-1011-01 3 11301122 11301122 C T HRH1 Silent p.L133L 0.15 TCGA-22-1011-01 3 150659416 150659416 T C CLRN1 Missense_Mutation p.E129G 0.14 deleterious(0.02) probably_damaging(0.944) TCGA-22-1011-01 3 184801052 184801052 C A C3orf70 Missense_Mutation p.D166Y 0.07 tolerated_low_confidence(0.18) benign(0.09) TCGA-22-1011-01 3 186358473 186358473 G T FETUB Missense_Mutation p.R75L 0.16 deleterious(0) benign(0.176) TCGA-22-1011-01 3 195954570 195954570 C T SLC51A Silent p.I108I 0.12 TCGA-22-1011-01 3 52476317 52476317 C A SEMA3G Nonsense_Mutation p.E115* 0.25 TCGA-22-1011-01 3 7721866 7721866 G A GRM7 Missense_Mutation p.R861Q 0.05 deleterious(0.02) probably_damaging(0.978) TCGA-22-1011-01 4 88534399 88534399 G A DSPP Missense_Mutation p.R354H 0.36 benign(0.049) TCGA-22-1011-01 5 102309957 102309957 G C PAM Missense_Mutation p.D434H 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-22-1011-01 5 139905808 139905808 G A ANKHD1 Missense_Mutation p.D1574N 0.16 probably_damaging(0.989) TCGA-22-1011-01 5 140558690 140558690 G C PCDHB8 Missense_Mutation p.E359Q 0.04 deleterious_low_confidence(0) probably_damaging(1) TCGA-22-1011-01 5 148680751 148680751 A C AFAP1L1 Missense_Mutation p.K95N 0.20 tolerated(0.61) benign(0.008) TCGA-22-1011-01 5 151166237 151166238 - TT G3BP1 Frame_Shift_Ins p.Y20Ffs*5 0.17 TCGA-22-1011-01 5 158750298 158750298 C G IL12B Missense_Mutation p.G43A 0.13 tolerated(0.91) benign(0.012) TCGA-22-1011-01 5 195433 195433 G C LRRC14B Missense_Mutation p.E504Q 0.05 tolerated(0.16) benign(0.297) TCGA-22-1011-01 5 31538616 31538616 G A C5orf22 Silent p.Q209Q 0.12 TCGA-22-1011-01 5 33963987 33963987 G A SLC45A2 Missense_Mutation p.H233Y 0.14 deleterious(0) probably_damaging(0.992) TCGA-22-1011-01 5 35957443 35957443 G C UGT3A1 Missense_Mutation p.Q308E 0.07 tolerated(0.4) benign(0.019) TCGA-22-1011-01 5 39383250 39383250 G A DAB2 Nonsense_Mutation p.Q271* 0.20 TCGA-22-1011-01 5 42807125 42807125 G C SEPP1 Missense_Mutation p.R97G 0.08 deleterious(0.01) benign(0.013) TCGA-22-1011-01 6 12161695 12161695 G C HIVEP1 Missense_Mutation p.E2171Q 0.15 deleterious(0.02) possibly_damaging(0.675) TCGA-22-1011-01 6 130415488 130415488 G C L3MBTL3 Missense_Mutation p.R571T 0.19 deleterious(0.04) benign(0.201) TCGA-22-1011-01 6 17781126 17781126 T A KIF13A Silent p.T1227T 0.13 TCGA-22-1011-01 6 18207729 18207729 C T KDM1B Missense_Mutation p.A355V 0.11 tolerated(0.08) unknown(0) TCGA-22-1011-01 6 24205305 24205305 T A DCDC2 Silent p.A316A 0.14 TCGA-22-1011-01 6 29713417 29713417 C A Y_RNA 5'Flank 0.12 TCGA-22-1011-01 6 31729633 31729633 C G MSH5 Missense_Mutation p.F741L 0.17 deleterious(0.01) probably_damaging(0.954) TCGA-22-1011-01 6 43316086 43316086 C T ZNF318 Silent p.S1016S 0.16 TCGA-22-1011-01 6 51949768 51949768 G A PKHD1 5'UTR 0.13 TCGA-22-1011-01 6 56470378 56470378 C G DST Intron 0.15 TCGA-22-1011-01 7 104747986 104747986 G C KMT2E Missense_Mutation p.D1028H 0.17 deleterious_low_confidence(0) possibly_damaging(0.586) TCGA-22-1011-01 7 122755608 122755608 C A SLC13A1 Silent p.S584S 0.17 TCGA-22-1011-01 7 124387341 124387341 G A GPR37 Silent p.F360F 0.16 TCGA-22-1011-01 7 126882877 126882877 C G GRM8 Missense_Mutation p.A128P 0.18 tolerated(0.27) benign(0.102) TCGA-22-1011-01 7 150767109 150767109 C G SLC4A2 Missense_Mutation p.S408C 0.17 deleterious(0.02) probably_damaging(0.987) TCGA-22-1011-01 7 1525003 1525003 G A INTS1 Nonsense_Mutation p.Q1027* 0.13 TCGA-22-1011-01 7 27872493 27872493 G C JAZF1 Missense_Mutation p.Q220E 0.12 deleterious(0.01) benign(0.197) TCGA-22-1011-01 7 91718793 91718793 G T AKAP9 Missense_Mutation p.G3103V 0.03 benign(0.13) TCGA-22-1011-01 7 92731423 92731423 C G SAMD9 Missense_Mutation p.E1330Q 0.05 tolerated(0.08) benign(0.058) TCGA-22-1011-01 8 11412926 11412926 G A BLK Silent p.E235E 0.16 TCGA-22-1011-01 8 145138051 145138051 C G GPAA1 Missense_Mutation p.I33M 0.16 deleterious(0.01) benign(0.131) TCGA-22-1011-01 8 2092716 2092716 G C MYOM2 Missense_Mutation p.M1403I 0.18 tolerated(0.46) benign(0.027) TCGA-22-1011-01 8 22172591 22172591 C T PIWIL2 Missense_Mutation p.A714V 0.22 tolerated(0.34) benign(0.23) TCGA-22-1011-01 8 52366145 52366145 G C PXDNL Missense_Mutation p.R395G 0.16 tolerated(0.45) benign(0.004) TCGA-22-1011-01 8 95780703 95780703 C T DPY19L4 Missense_Mutation p.S419F 0.13 deleterious(0) benign(0.284) TCGA-22-1011-01 9 120470908 120470908 T G TLR4 Missense_Mutation p.F54C 0.20 tolerated(0.1) benign(0.002) TCGA-22-1011-01 9 128432143 128432143 G C MAPKAP1 Missense_Mutation p.I101M 0.21 tolerated(0.22) probably_damaging(0.969) TCGA-22-1011-01 9 131257047 131257047 C G ODF2 Intron 0.15 TCGA-22-1011-01 9 140086755 140086755 C G TPRN Missense_Mutation p.E677Q 0.12 tolerated(0.07) possibly_damaging(0.696) TCGA-22-1011-01 9 72131759 72131759 C A APBA1 Missense_Mutation p.R123L 0.10 deleterious_low_confidence(0.04) probably_damaging(0.997) TCGA-22-1011-01 9 96407915 96407915 G A PHF2 Missense_Mutation p.E102K 0.12 deleterious(0) unknown(0) TCGA-22-1011-01 9 977163 977179 CTGCGAGAAGTGCATCC TTG DMRT3 Frame_Shift_Del p.E56Hfs*95 0.41 TCGA-22-1011-01 X 134987410 134987410 G T SAGE1 Splice_Site p.X105_splice 0.29 TCGA-22-1011-01 X 151935729 151935729 G C MAGEA3 Missense_Mutation p.F146L 0.31 tolerated(0.11) benign(0.012) TCGA-22-1011-01 X 47070251 47070251 C T UBA1 Missense_Mutation p.S737L 0.39 tolerated(0.09) benign(0.099) TCGA-22-1011-01 X 48378761 48378761 A T PORCN Splice_Site p.X429_splice 0.26 TCGA-22-1011-01 X 73064048 73064048 A G XIST RNA 0.31 TCGA-22-1011-01 Y 14922619 14922619 G C USP9Y Missense_Mutation p.E1369Q 0.11 tolerated(0.29) possibly_damaging(0.672) TCGA-22-1012-01 10 105162882 105162882 G T PDCD11 Missense_Mutation p.C81F 0.21 deleterious(0.04) benign(0.088) TCGA-22-1012-01 10 116056662 116056662 C G AFAP1L2 Intron 0.11 TCGA-22-1012-01 10 134188614 134188614 A C LRRC27 Missense_Mutation p.L487F 0.08 tolerated(0.1) benign(0.348) TCGA-22-1012-01 10 135011179 135011179 G T KNDC1 Missense_Mutation p.V605L 0.14 tolerated(0.11) benign(0.258) TCGA-22-1012-01 10 17742236 17742236 A T STAM Silent p.V290V 0.10 TCGA-22-1012-01 10 27382400 27382400 C T ANKRD26 Missense_Mutation p.A137T 0.10 deleterious(0) probably_damaging(0.983) TCGA-22-1012-01 10 37421200 37421200 G C ANKRD30A Silent p.T125T 0.15 TCGA-22-1012-01 10 43882414 43882414 T A HNRNPF Missense_Mutation p.N307Y 0.11 deleterious(0) probably_damaging(0.941) TCGA-22-1012-01 10 43882837 43882837 C G HNRNPF Missense_Mutation p.E166Q 0.12 deleterious(0.01) probably_damaging(0.991) TCGA-22-1012-01 10 48390698 48390698 C A RBP3 Missense_Mutation p.E60D 0.21 tolerated(0.05) possibly_damaging(0.759) TCGA-22-1012-01 10 51465318 51465318 G T AGAP7 Missense_Mutation p.L380I 0.22 tolerated(0.06) benign(0.334) TCGA-22-1012-01 10 52573658 52573658 G A A1CF Missense_Mutation p.P436S 0.23 tolerated(0.09) benign(0.138) TCGA-22-1012-01 10 67829247 67829247 C A CTNNA3 Missense_Mutation p.A660S 0.11 tolerated(0.4) unknown(0) TCGA-22-1012-01 10 69935179 69935179 G A MYPN Silent p.G888G 0.11 TCGA-22-1012-01 10 74684331 74684331 G A OIT3 Silent p.L432L 0.11 TCGA-22-1012-01 10 75520505 75520505 T A SEC24C Missense_Mutation p.N295K 0.12 tolerated(0.12) benign(0.14) TCGA-22-1012-01 10 7618578 7618578 G T ITIH5 Missense_Mutation p.Q606K 0.26 tolerated(0.96) benign(0.013) TCGA-22-1012-01 10 85984767 85984767 G C LRIT2 Missense_Mutation p.Q72E 0.13 deleterious(0.03) benign(0.026) TCGA-22-1012-01 10 890987 890987 C T LARP4B Missense_Mutation p.E147K 0.28 tolerated(0.49) benign(0.211) TCGA-22-1012-01 10 95518036 95518036 G A LGI1 Silent p.V45V 0.09 TCGA-22-1012-01 10 98762475 98762475 G T SLIT1 Silent p.P1380P 0.19 TCGA-22-1012-01 11 117265653 117265653 T C CEP164 Silent p.D926D 0.15 TCGA-22-1012-01 11 125359634 125359634 C T FEZ1 Missense_Mutation p.D14N 0.09 deleterious(0) possibly_damaging(0.631) TCGA-22-1012-01 11 17132046 17132046 G C PIK3C2A Missense_Mutation p.I1159M 0.09 tolerated(0.13) possibly_damaging(0.791) TCGA-22-1012-01 11 18956325 18956325 G T MRGPRX1 Missense_Mutation p.P3T 0.17 tolerated(0.17) benign(0.126) TCGA-22-1012-01 11 2185535 2185535 G T TH Silent p.A505A 0.30 TCGA-22-1012-01 11 22363311 22363311 C G SLC17A6 Silent p.G108G 0.14 TCGA-22-1012-01 11 33682446 33682446 C A KIAA1549L Silent p.A1718A 0.25 TCGA-22-1012-01 11 45268004 45268004 G A SYT13 Silent p.N302N 0.26 TCGA-22-1012-01 11 45671891 45671891 C T CHST1 Missense_Mutation p.E195K 0.15 tolerated(0.17) benign(0.01) TCGA-22-1012-01 11 51515878 51515878 C G OR4C46 Silent p.A199A 0.16 TCGA-22-1012-01 11 5153746 5153746 C A OR52A5 Nonsense_Mutation p.G43* 0.19 TCGA-22-1012-01 11 55406513 55406513 C T OR4P4 Missense_Mutation p.S227F 0.21 deleterious(0) possibly_damaging(0.907) TCGA-22-1012-01 11 59210840 59210840 A C OR5A1 Missense_Mutation p.S67R 0.10 deleterious(0.04) benign(0.016) TCGA-22-1012-01 11 61672049 61672049 T G RAB3IL1 Missense_Mutation p.K290Q 0.14 deleterious(0.01) benign(0.342) TCGA-22-1012-01 11 64663931 64663931 C G ATG2A Intron 0.21 TCGA-22-1012-01 11 71952160 71952160 C T PHOX2A Missense_Mutation p.E131K 0.15 deleterious(0) benign(0.213) TCGA-22-1012-01 11 726387 726387 C A EPS8L2 Missense_Mutation p.R613S 0.27 tolerated(0.18) benign(0.087) TCGA-22-1012-01 11 78383075 78383075 T A TENM4 Intron 0.26 TCGA-22-1012-01 11 85437341 85437341 G A SYTL2 Silent p.H53H 0.30 TCGA-22-1012-01 11 88583186 88583186 G C GRM5 Missense_Mutation p.H267D 0.36 tolerated(0.2) probably_damaging(0.937) TCGA-22-1012-01 11 89135615 89135615 T A NOX4 Missense_Mutation p.Y242F 0.12 tolerated(0.54) benign(0.025) TCGA-22-1012-01 12 10168373 10168373 C T CLEC12B Intron 0.21 TCGA-22-1012-01 12 103237469 103237469 A G PAH Missense_Mutation p.L385P 0.21 deleterious(0) possibly_damaging(0.817) TCGA-22-1012-01 12 109880040 109880040 C T MYO1H Missense_Mutation p.P868L 0.24 tolerated(0.32) probably_damaging(1) TCGA-22-1012-01 12 113537693 113537693 C T RASAL1 3'UTR 0.20 TCGA-22-1012-01 12 113539713 113539713 G A RASAL1 Silent p.L737L 0.11 TCGA-22-1012-01 12 113758204 113758204 T C SLC8B1 Missense_Mutation p.Y209C 0.05 deleterious(0) probably_damaging(1) TCGA-22-1012-01 12 117718548 117718548 G T NOS1 Silent p.A502A 0.22 TCGA-22-1012-01 12 123214157 123214157 G A HCAR1 Missense_Mutation p.L244F 0.26 tolerated(0.56) probably_damaging(0.941) TCGA-22-1012-01 12 132400609 132400609 G C ULK1 Missense_Mutation p.G595R 0.46 deleterious(0) possibly_damaging(0.847) TCGA-22-1012-01 12 2797827 2797827 C A CACNA1C Missense_Mutation p.P2048H 0.34 deleterious_low_confidence(0.03) benign(0.172) TCGA-22-1012-01 12 40442010 40442010 T C SLC2A13 Missense_Mutation p.I187V 0.29 tolerated(0.35) benign(0.012) TCGA-22-1012-01 12 4778914 4778914 A T NDUFA9 Missense_Mutation p.D244V 0.30 deleterious(0) probably_damaging(0.995) TCGA-22-1012-01 12 52284807 52284807 G A ANKRD33 Silent p.P359P 0.13 TCGA-22-1012-01 12 52844342 52844342 C A KRT6B Missense_Mutation p.Q201H 0.05 tolerated(0.06) probably_damaging(1) TCGA-22-1012-01 12 52866002 52866002 C A KRT6C Missense_Mutation p.Q201H 0.07 tolerated(0.05) probably_damaging(1) TCGA-22-1012-01 12 53646886 53646886 C A MFSD5 Silent p.V196V 0.11 TCGA-22-1012-01 12 53708616 53708616 C A AAAS Missense_Mutation p.R155L 0.22 deleterious(0) probably_damaging(0.994) TCGA-22-1012-01 12 55715175 55715175 T C OR6C1 Silent p.D264D 0.16 TCGA-22-1012-01 12 57866179 57866179 C G ARHGAP9 3'UTR 0.23 TCGA-22-1012-01 12 58217481 58217482 - A CTDSP2 Frame_Shift_Ins p.M240Ifs*5 0.18 TCGA-22-1012-01 12 68715378 68715378 C G MDM1 Missense_Mutation p.E278Q 0.11 tolerated(0.19) possibly_damaging(0.801) TCGA-22-1012-01 12 72057376 72057376 A G ZFC3H1 Silent p.D5D 0.04 TCGA-22-1012-01 12 7475047 7475047 C A ACSM4 Silent p.T345T 0.06 TCGA-22-1012-01 12 7947752 7947752 C A NANOG 3'UTR 0.12 TCGA-22-1012-01 12 80660274 80660274 G A OTOGL Silent p.S747S 0.17 TCGA-22-1012-01 12 977437 977437 G T WNK1 Intron 0.54 TCGA-22-1012-01 12 99139402 99139402 C A ANKS1B Intron 0.40 TCGA-22-1012-01 13 107145564 107145564 T A EFNB2 Nonsense_Mutation p.K276* 0.28 TCGA-22-1012-01 13 19753680 19753680 C A TUBA3C Silent p.V9V 0.26 TCGA-22-1012-01 13 20220920 20220920 G C MPHOSPH8 Missense_Mutation p.R236T 0.11 deleterious_low_confidence(0) possibly_damaging(0.735) TCGA-22-1012-01 13 28539154 28539154 T C CDX2 Splice_Site p.X181_splice 0.13 TCGA-22-1012-01 13 41642710 41642710 A G WBP4 Silent p.P92P 0.10 TCGA-22-1012-01 13 70314629 70314629 G T KLHL1 Missense_Mutation p.L567M 0.17 deleterious(0) probably_damaging(1) TCGA-22-1012-01 13 78474768 78474768 C T EDNRB Missense_Mutation p.V415I 0.29 deleterious(0.01) probably_damaging(0.928) TCGA-22-1012-01 13 95131309 95131309 G C DCT Missense_Mutation p.D67E 0.05 deleterious(0) probably_damaging(0.999) TCGA-22-1012-01 13 95715008 95715008 T C ABCC4 Missense_Mutation p.T1106A 0.20 tolerated(0.16) benign(0.303) TCGA-22-1012-01 14 106967184 106967184 A T IGHV1-46 Silent p.P72P 0.03 TCGA-22-1012-01 14 23854130 23854130 T G MYH6 Missense_Mutation p.T1762P 0.15 deleterious(0.01) probably_damaging(0.976) TCGA-22-1012-01 14 33291373 33291373 G A AKAP6 Missense_Mutation p.D1452N 0.30 tolerated_low_confidence(0.08) probably_damaging(0.998) TCGA-22-1012-01 14 58814583 58814583 T G ARID4A Nonsense_Mutation p.L464* 0.25 TCGA-22-1012-01 14 73726051 73726051 C G PAPLN Missense_Mutation p.P568A 0.12 deleterious(0.03) benign(0.168) TCGA-22-1012-01 15 20170322 20170322 C G IGHV1OR15-9 Silent p.V11V 0.19 TCGA-22-1012-01 15 25299445 25299445 G C SNORD116-2 RNA 0.29 TCGA-22-1012-01 15 28358790 28358790 G A HERC2 Missense_Mutation p.R4650W 0.29 probably_damaging(0.997) TCGA-22-1012-01 15 40241344 40241344 G A EIF2AK4 Missense_Mutation p.V130M 0.05 deleterious(0) probably_damaging(0.985) TCGA-22-1012-01 15 42109934 42109934 G T MAPKBP1 Splice_Site p.X641_splice 0.32 TCGA-22-1012-01 15 50534807 50534807 C G HDC Missense_Mutation p.D547H 0.19 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-22-1012-01 15 56386134 56386134 T C RFX7 Silent p.A1264A 0.32 TCGA-22-1012-01 15 58247325 58247325 G A ALDH1A2 3'UTR 0.35 TCGA-22-1012-01 15 77021063 77021063 G C SCAPER Missense_Mutation p.L680V 0.18 deleterious(0) possibly_damaging(0.872) TCGA-22-1012-01 15 78486325 78486325 C A ACSBG1 Missense_Mutation p.G164V 0.10 deleterious(0.01) benign(0.424) TCGA-22-1012-01 15 92977483 92977483 A T ST8SIA2 Missense_Mutation p.E56D 0.15 benign(0.002) TCGA-22-1012-01 16 27268767 27268767 T C NSMCE1 Missense_Mutation p.K42R 0.11 tolerated(0.26) benign(0.001) TCGA-22-1012-01 16 27751428 27751428 T G KIAA0556 Missense_Mutation p.L604V 0.31 deleterious(0.03) probably_damaging(0.976) TCGA-22-1012-01 16 4836106 4836106 C A SEPT12 Missense_Mutation p.G56V 0.29 deleterious(0) probably_damaging(1) TCGA-22-1012-01 16 4836107 4836107 C A SEPT12 Splice_Site p.X56_splice 0.29 TCGA-22-1012-01 16 58750702 58750702 C A GOT2 Missense_Mutation p.A240S 0.20 deleterious(0.04) benign(0.121) TCGA-22-1012-01 16 597775 597775 G A CAPN15 Missense_Mutation p.G313S 0.45 tolerated_low_confidence(0.74) benign(0.006) TCGA-22-1012-01 16 69375608 69375608 C G NIP7 3'UTR 0.04 TCGA-22-1012-01 16 69965469 69965469 G T WWP2 Missense_Mutation p.D527Y 0.34 deleterious(0) probably_damaging(1) TCGA-22-1012-01 16 75263596 75263596 C T BCAR1 Missense_Mutation p.R855H 0.24 deleterious(0) probably_damaging(0.997) TCGA-22-1012-01 16 81161381 81161381 C T PKD1L2 RNA 0.25 TCGA-22-1012-01 16 8890269 8890269 C T TMEM186 Missense_Mutation p.R61H 0.25 deleterious(0) probably_damaging(1) TCGA-22-1012-01 17 3561418 3561418 C A CTNS Missense_Mutation p.F267L 0.05 deleterious(0.01) benign(0.32) TCGA-22-1012-01 17 38906799 38906799 C A KRT25 Silent p.A336A 0.23 TCGA-22-1012-01 17 38991294 38991294 C G TMEM99 Missense_Mutation p.L176V 0.10 tolerated_low_confidence(0.05) possibly_damaging(0.567) TCGA-22-1012-01 17 39550377 39550377 G T KRT31 Missense_Mutation p.P381H 0.18 deleterious(0.01) benign(0.177) TCGA-22-1012-01 17 39912009 39912009 T C JUP Missense_Mutation p.H742R 0.21 deleterious_low_confidence(0.01) benign(0.225) TCGA-22-1012-01 17 42815778 42815778 C G DBF4B Missense_Mutation p.I233M 0.24 deleterious(0.01) possibly_damaging(0.756) TCGA-22-1012-01 17 43004447 43004447 C T KIF18B Splice_Site p.X759_splice 0.26 TCGA-22-1012-01 17 43012738 43012738 C A KIF18B Silent p.L120L 0.18 TCGA-22-1012-01 17 44096082 44096082 G A MAPT Missense_Mutation p.G701R 0.27 deleterious(0) possibly_damaging(0.888) TCGA-22-1012-01 17 44952487 44952487 C G WNT9B Missense_Mutation p.L119V 0.09 deleterious(0.01) possibly_damaging(0.793) TCGA-22-1012-01 17 45232092 45232092 G A CDC27 Silent p.Y301Y 0.21 TCGA-22-1012-01 17 48745019 48745019 G T ABCC3 Missense_Mutation p.K512N 0.28 tolerated(0.05) benign(0.102) TCGA-22-1012-01 17 49270151 49270157 GCTGGAG - MBTD1 Frame_Shift_Del p.P559Hfs*30 0.15 TCGA-22-1012-01 17 54559849 54559849 G T ANKFN1 Missense_Mutation p.G745W 0.08 deleterious(0) probably_damaging(0.97) TCGA-22-1012-01 17 61560495 61560495 C - ACE Frame_Shift_Del p.P485Lfs*40 0.22 TCGA-22-1012-01 17 61560819 61560819 A G ACE Splice_Site p.X496_splice 0.19 TCGA-22-1012-01 17 66267246 66267246 T A SLC16A6 Missense_Mutation p.N352I 0.16 deleterious(0) probably_damaging(0.933) TCGA-22-1012-01 17 68171404 68171404 C A KCNJ2 Missense_Mutation p.T75K 0.28 deleterious(0) probably_damaging(1) TCGA-22-1012-01 17 7578177 7578177 C G TP53 Missense_Mutation p.E224D 0.31 tolerated(0.06) benign(0.085) TCGA-22-1012-01 18 23731827 23731827 A G PSMA8 Missense_Mutation p.T85A 0.06 deleterious(0.02) probably_damaging(0.981) TCGA-22-1012-01 18 61260205 61260205 G T SERPINB13 Nonsense_Mutation p.E158* 0.23 TCGA-22-1012-01 18 74625717 74625717 A G ZNF236 Missense_Mutation p.N973S 0.19 tolerated(0.49) benign(0.008) TCGA-22-1012-01 18 76753289 76753289 G C SALL3 Missense_Mutation p.S433T 0.30 deleterious(0) probably_damaging(0.995) TCGA-22-1012-01 19 11361676 11361676 T G DOCK6 Silent p.A198A 0.15 TCGA-22-1012-01 19 11447965 11447965 G A RAB3D Silent p.S37S 0.31 TCGA-22-1012-01 19 12807432 12807432 C G FBXW9 5'UTR 0.06 TCGA-22-1012-01 19 13947400 13947400 G C ZSWIM4 3'Flank 0.06 TCGA-22-1012-01 19 2351493 2351493 C T LLfos-48D6.1 3'Flank 0.52 TCGA-22-1012-01 19 23544808 23544808 C A ZNF91 Nonsense_Mutation p.E325* 0.13 TCGA-22-1012-01 19 37870038 37870038 G T ZNF527 Missense_Mutation p.R17I 0.21 deleterious(0.01) possibly_damaging(0.603) TCGA-22-1012-01 19 39123078 39123078 G - EIF3K Frame_Shift_Del p.D122Mfs*10 0.13 TCGA-22-1012-01 19 39516090 39516090 C T FBXO27 Silent p.V271V 0.08 TCGA-22-1012-01 19 39916071 39916071 C T PLEKHG2 3'UTR 0.14 TCGA-22-1012-01 19 41784998 41784998 C T HNRNPUL1 Missense_Mutation p.S268F 0.14 deleterious(0.02) unknown(0) TCGA-22-1012-01 19 54314294 54314294 G T NLRP12 Missense_Mutation p.P207T 0.10 tolerated(0.23) probably_damaging(1) TCGA-22-1012-01 19 56422060 56422060 G T NLRP13 Missense_Mutation p.S717R 0.11 deleterious(0) benign(0.035) TCGA-22-1012-01 19 56953098 56953098 C T ZNF667 Silent p.K422K 0.18 TCGA-22-1012-01 19 9062137 9062137 G T MUC16 Missense_Mutation p.L8437I 0.35 unknown(0) TCGA-22-1012-01 19 9084383 9084383 T C MUC16 Missense_Mutation p.M2478V 0.37 unknown(0) TCGA-22-1012-01 1 109815822 109815822 A T CELSR2 Silent p.P2791P 0.24 TCGA-22-1012-01 1 116243847 116243847 T A CASQ2 3'UTR 0.14 TCGA-22-1012-01 1 142713982 142713982 A G RP11-417J8.6 RNA 0.29 TCGA-22-1012-01 1 152277174 152277174 A T FLG Silent p.S3396S 0.18 TCGA-22-1012-01 1 155718092 155718092 C A GON4L 3'Flank 0.16 TCGA-22-1012-01 1 157104020 157104020 C A ETV3 Splice_Site p.X95_splice 0.21 TCGA-22-1012-01 1 158151509 158151509 C G CD1D Missense_Mutation p.S109C 0.11 deleterious(0) benign(0.113) TCGA-22-1012-01 1 160182942 160182942 G A PEA15 Missense_Mutation p.R72H 0.08 deleterious(0.01) probably_damaging(0.915) TCGA-22-1012-01 1 160319459 160319459 T C NCSTN Silent p.F145F 0.32 TCGA-22-1012-01 1 167343475 167343475 C G POU2F1 Missense_Mutation p.A178G 0.28 deleterious(0) unknown(0) TCGA-22-1012-01 1 169564103 169564103 G T SELP Nonsense_Mutation p.S705* 0.11 TCGA-22-1012-01 1 181767462 181767462 C A CACNA1E Missense_Mutation p.S2145Y 0.30 deleterious(0.03) probably_damaging(0.962) TCGA-22-1012-01 1 201104773 201104773 C A TMEM9 3'UTR 0.34 TCGA-22-1012-01 1 203188958 203188958 C T CHIT1 Nonsense_Mutation p.W250* 0.29 TCGA-22-1012-01 1 204228610 204228610 C A PLEKHA6 Silent p.G261G 0.31 TCGA-22-1012-01 1 220170329 220170329 G A EPRS Missense_Mutation p.P846L 0.21 tolerated(0.09) benign(0.009) TCGA-22-1012-01 1 220179484 220179484 G C EPRS Missense_Mutation p.D638E 0.21 tolerated(0.16) benign(0.38) TCGA-22-1012-01 1 220198593 220198593 G T EPRS Missense_Mutation p.H211N 0.18 deleterious(0) probably_damaging(0.948) TCGA-22-1012-01 1 233482294 233482294 A T MLK4 Silent p.T304T 0.35 TCGA-22-1012-01 1 235955166 235955166 G A LYST Missense_Mutation p.P1459L 0.39 deleterious(0) benign(0.357) TCGA-22-1012-01 1 245018908 245018908 G A HNRNPU Missense_Mutation p.P724S 0.17 tolerated(0.18) unknown(0) TCGA-22-1012-01 1 246027182 246027182 C T SMYD3 Missense_Mutation p.D274N 0.08 tolerated(0.48) benign(0.017) TCGA-22-1012-01 1 248224038 248224038 C A OR2L3 Missense_Mutation p.P19T 0.13 tolerated(0.34) benign(0.183) TCGA-22-1012-01 1 26513718 26513718 T G CNKSR1 Missense_Mutation p.D456E 0.27 tolerated(1) benign(0.065) TCGA-22-1012-01 1 26759433 26759433 A G DHDDS 5'UTR 0.09 TCGA-22-1012-01 1 32196407 32196407 G T BAI2 Silent p.S1458S 0.20 TCGA-22-1012-01 1 3347564 3347564 C G PRDM16 Missense_Mutation p.S1138W 0.20 deleterious(0) probably_damaging(0.967) TCGA-22-1012-01 1 34208955 34208955 C A CSMD2 Missense_Mutation p.S660I 0.15 deleterious(0.01) probably_damaging(0.979) TCGA-22-1012-01 1 3547423 3547423 A G WRAP73 3'UTR 0.17 TCGA-22-1012-01 1 3683924 3683924 T C CCDC27 Missense_Mutation p.L553P 0.16 deleterious(0) probably_damaging(0.914) TCGA-22-1012-01 1 39801075 39801075 C G MACF1 Intron 0.05 TCGA-22-1012-01 1 46650002 46650002 T C TSPAN1 Missense_Mutation p.V66A 0.06 tolerated(0.1) benign(0.113) TCGA-22-1012-01 1 66458712 66458712 A C PDE4B Intron 0.19 TCGA-22-1012-01 1 75055466 75055466 T A C1orf173 Missense_Mutation p.K675N 0.16 tolerated(0.11) benign(0.045) TCGA-22-1012-01 1 78272736 78272736 T C FAM73A Missense_Mutation p.I196T 0.04 tolerated(0.45) benign(0.011) TCGA-22-1012-01 1 79403966 79403966 T G ELTD1 Splice_Site p.X133_splice 0.15 TCGA-22-1012-01 1 9022676 9022676 A G CA6 Missense_Mutation p.S178G 0.14 deleterious(0.01) possibly_damaging(0.731) TCGA-22-1012-01 20 18448065 18448065 A G POLR3F 5'UTR 0.28 TCGA-22-1012-01 20 20033048 20033048 G T CRNKL1 Missense_Mutation p.S141Y 0.11 deleterious_low_confidence(0.04) benign(0.005) TCGA-22-1012-01 20 23433296 23433296 G T CST11 Silent p.I51I 0.12 TCGA-22-1012-01 20 3898152 3898152 G C PANK2 Intron 0.04 TCGA-22-1012-01 20 40739003 40739003 G - PTPRT Frame_Shift_Del p.P1075Rfs*6 0.31 TCGA-22-1012-01 20 42087023 42087023 G A SRSF6 Missense_Mutation p.D44N 0.15 tolerated(0.09) probably_damaging(0.982) TCGA-22-1012-01 20 42893100 42893100 C A GDAP1L1 Missense_Mutation p.H221N 0.31 deleterious(0.03) probably_damaging(0.98) TCGA-22-1012-01 20 47633845 47633845 G A ARFGEF2 Missense_Mutation p.G1459R 0.10 deleterious(0) probably_damaging(0.98) TCGA-22-1012-01 20 47633846 47633846 G T ARFGEF2 Missense_Mutation p.G1459V 0.10 tolerated(0.14) possibly_damaging(0.78) TCGA-22-1012-01 20 49551537 49551537 T C DPM1 3'UTR 0.18 TCGA-22-1012-01 20 50407607 50407610 AAAG - SALL4 Frame_Shift_Del p.S471* 0.15 TCGA-22-1012-01 20 55027721 55027721 G T CASS4 Missense_Mutation p.A497S 0.07 deleterious(0.01) probably_damaging(0.995) TCGA-22-1012-01 21 11038856 11038856 G A BAGE2 RNA 0.08 TCGA-22-1012-01 22 17443699 17443699 T C GAB4 Missense_Mutation p.Q550R 0.21 deleterious(0) benign(0.014) TCGA-22-1012-01 22 19221124 19221124 T C CLTCL1 Missense_Mutation p.T397A 0.24 deleterious(0) probably_damaging(0.999) TCGA-22-1012-01 22 21119398 21119398 G A PI4KA Missense_Mutation p.T855M 0.07 deleterious(0) probably_damaging(0.943) TCGA-22-1012-01 22 32234677 32234677 C T DEPDC5 Silent p.D778D 0.09 TCGA-22-1012-01 22 34000432 34000432 C A LARGE Missense_Mutation p.D202Y 0.19 deleterious(0) probably_damaging(0.983) TCGA-22-1012-01 22 36690217 36690217 T G MYH9 Missense_Mutation p.Q1253P 0.07 probably_damaging(0.945) TCGA-22-1012-01 22 50714336 50714336 C T AL022328.1 Missense_Mutation p.R52C 0.12 deleterious_low_confidence(0) unknown(0) TCGA-22-1012-01 2 102793234 102793234 C T IL1R1 3'UTR 0.14 TCGA-22-1012-01 2 155711809 155711809 C A KCNJ3 Missense_Mutation p.S497Y 0.11 deleterious_low_confidence(0) possibly_damaging(0.726) TCGA-22-1012-01 2 162902048 162902048 G T DPP4 Nonsense_Mutation p.Y120* 0.29 TCGA-22-1012-01 2 164591418 164591418 A G FIGN Missense_Mutation p.V7A 0.26 deleterious(0.03) benign(0.027) TCGA-22-1012-01 2 179399830 179399830 C G TTN Missense_Mutation p.E33838Q 0.13 TCGA-22-1012-01 2 179408666 179408666 A G TTN Silent p.L32069L 0.26 TCGA-22-1012-01 2 179417067 179417067 A G TTN Missense_Mutation p.I30187T 0.25 TCGA-22-1012-01 2 179606163 179606163 C G TTN Missense_Mutation p.G3933R 0.22 TCGA-22-1012-01 2 179610450 179610450 G C TTN Intron 0.21 TCGA-22-1012-01 2 1842948 1842948 A G MYT1L Missense_Mutation p.V1016A 0.17 tolerated(0.68) benign(0.388) TCGA-22-1012-01 2 207527699 207527699 C T DYTN Missense_Mutation p.E521K 0.21 tolerated(0.09) possibly_damaging(0.678) TCGA-22-1012-01 2 209345847 209345847 G T PTH2R Missense_Mutation p.W345L 0.24 tolerated(0.19) possibly_damaging(0.9) TCGA-22-1012-01 2 210545476 210545476 G C MAP2 Missense_Mutation p.A127P 0.19 deleterious_low_confidence(0.02) benign(0.033) TCGA-22-1012-01 2 219892259 219892259 G T CCDC108 Intron 0.35 TCGA-22-1012-01 2 228401617 228401617 C G AGFG1 Missense_Mutation p.A453G 0.09 tolerated(0.07) benign(0.029) TCGA-22-1012-01 2 26536650 26536650 G - GPR113 Frame_Shift_Del p.I419Sfs*42 0.23 TCGA-22-1012-01 2 32927940 32927940 G C TTC27 Missense_Mutation p.E396Q 0.11 deleterious(0) possibly_damaging(0.488) TCGA-22-1012-01 2 33752259 33752259 G T RASGRP3 Missense_Mutation p.R288L 0.09 deleterious(0) probably_damaging(0.998) TCGA-22-1012-01 2 39485574 39485574 T C MAP4K3 Missense_Mutation p.I795M 0.24 deleterious(0.02) possibly_damaging(0.682) TCGA-22-1012-01 2 49217732 49217732 T A FSHR Missense_Mutation p.K140M 0.20 deleterious(0.03) benign(0.067) TCGA-22-1012-01 2 50723176 50723176 T C NRXN1 Silent p.S1019S 0.08 TCGA-22-1012-01 2 74042951 74042951 G T C2orf78 Missense_Mutation p.G534V 0.21 tolerated(0.23) benign(0) TCGA-22-1012-01 2 90212098 90212098 C G IGKV3D-11 Missense_Mutation p.P64A 0.21 deleterious(0.01) probably_damaging(1) TCGA-22-1012-01 2 97171043 97171043 A T NEURL3 RNA 0.22 TCGA-22-1012-01 2 99234637 99234637 C T UNC50 Missense_Mutation p.P217L 0.21 deleterious(0) probably_damaging(0.999) TCGA-22-1012-01 3 126071007 126071007 G A KLF15 Silent p.V253V 0.15 TCGA-22-1012-01 3 129268069 129268069 G T H1FOO Missense_Mutation p.G202C 0.27 deleterious(0.03) benign(0.071) TCGA-22-1012-01 3 134322634 134322634 G C KY Silent p.A591A 0.06 TCGA-22-1012-01 3 138739282 138739282 G A PRR23B Silent p.D74D 0.21 TCGA-22-1012-01 3 147131449 147131449 G T ZIC1 3'UTR 0.32 TCGA-22-1012-01 3 150128694 150128694 T A TSC22D2 Silent p.P519P 0.05 TCGA-22-1012-01 3 159706967 159706967 T C IL12A Intron 0.26 TCGA-22-1012-01 3 166960356 166960356 T A ZBBX Missense_Mutation p.Q777L 0.29 tolerated(0.09) benign(0.033) TCGA-22-1012-01 3 179096197 179096197 C T MFN1 Silent p.N466N 0.07 TCGA-22-1012-01 3 183907499 183907499 A G ABCF3 Missense_Mutation p.Q423R 0.27 tolerated(0.06) probably_damaging(0.913) TCGA-22-1012-01 3 184294844 184294844 G T EPHB3 Silent p.R409R 0.28 TCGA-22-1012-01 3 191093098 191093098 G A CCDC50 Silent p.R232R 0.23 TCGA-22-1012-01 3 194080070 194080070 C A LRRC15 Missense_Mutation p.S574I 0.07 deleterious(0) possibly_damaging(0.72) TCGA-22-1012-01 3 48416948 48416948 T C FBXW12 Missense_Mutation p.W131R 0.21 deleterious(0) probably_damaging(0.969) TCGA-22-1012-01 3 49067898 49067898 C G QRICH1 Missense_Mutation p.S773T 0.05 tolerated_low_confidence(0.26) benign(0.003) TCGA-22-1012-01 3 51265417 51265417 G T DOCK3 Missense_Mutation p.K515N 0.09 deleterious(0) probably_damaging(0.975) TCGA-22-1012-01 3 52651314 52651314 G A PBRM1 Silent p.F594F 0.14 TCGA-22-1012-01 3 93699219 93699219 G T ARL13B 5'UTR 0.23 TCGA-22-1012-01 3 93699220 93699220 G T ARL13B 5'UTR 0.24 TCGA-22-1012-01 4 103720086 103720086 C A UBE2D3 Intron 0.26 TCGA-22-1012-01 4 103822366 103822366 G T SLC9B1 Missense_Mutation p.L486I 0.04 tolerated(0.06) benign(0.401) TCGA-22-1012-01 4 10445664 10445664 C A ZNF518B Missense_Mutation p.K763N 0.32 tolerated(0.51) benign(0.018) TCGA-22-1012-01 4 110745172 110745172 G T GAR1 Missense_Mutation p.R208I 0.39 deleterious_low_confidence(0) unknown(0) TCGA-22-1012-01 4 153244194 153244194 C A FBXW7 Nonsense_Mutation p.E655* 0.35 TCGA-22-1012-01 4 16010597 16010597 T C PROM1 Missense_Mutation p.T426A 0.21 tolerated(0.67) benign(0.021) TCGA-22-1012-01 4 170628195 170628195 G T CLCN3 Missense_Mutation p.D643Y 0.11 deleterious(0) probably_damaging(0.968) TCGA-22-1012-01 4 187541367 187541367 C A FAT1 Nonsense_Mutation p.E2125* 0.33 TCGA-22-1012-01 4 187627768 187627776 AGTATCGGA C FAT1 Frame_Shift_Del p.I1069Sfs*3 0.10 TCGA-22-1012-01 4 1985126 1985126 C T NELFA Missense_Mutation p.D514N 0.18 deleterious(0) possibly_damaging(0.908) TCGA-22-1012-01 4 46043016 46043016 G T GABRG1 Missense_Mutation p.L463I 0.10 tolerated(0.07) probably_damaging(0.984) TCGA-22-1012-01 4 56878146 56878146 C G CEP135 Missense_Mutation p.Q933E 0.11 tolerated(0.52) benign(0.234) TCGA-22-1012-01 4 6925734 6925734 C A TBC1D14 Missense_Mutation p.S206R 0.14 deleterious(0) possibly_damaging(0.467) TCGA-22-1012-01 4 70918792 70918792 C A HTN1 5'UTR 0.05 TCGA-22-1012-01 4 89361102 89361102 G C HERC6 Missense_Mutation p.G878R 0.39 deleterious(0) probably_damaging(1) TCGA-22-1012-01 5 1213604 1213604 C G SLC6A19 Silent p.P230P 0.06 TCGA-22-1012-01 5 140794992 140794992 T G PCDHGA10 Silent p.V750V 0.27 TCGA-22-1012-01 5 140794994 140794994 G A PCDHGA10 Missense_Mutation p.R751Q 0.28 tolerated_low_confidence(0.51) benign(0.024) TCGA-22-1012-01 5 149374569 149374569 G T TIGD6 Missense_Mutation p.A448E 0.27 tolerated(0.78) benign(0.001) TCGA-22-1012-01 5 156593213 156593213 C A FAM71B 5'UTR 0.33 TCGA-22-1012-01 5 156788526 156788526 G C CYFIP2 Missense_Mutation p.E961Q 0.10 deleterious(0.01) probably_damaging(0.93) TCGA-22-1012-01 5 159344738 159344738 A G ADRA1B Missense_Mutation p.R276G 0.30 deleterious(0) probably_damaging(0.999) TCGA-22-1012-01 5 16694657 16694657 C A MYO10 Missense_Mutation p.R1208L 0.55 deleterious(0) probably_damaging(0.987) TCGA-22-1012-01 5 16694658 16694658 G A MYO10 Missense_Mutation p.R1208C 0.55 deleterious(0) probably_damaging(0.993) TCGA-22-1012-01 5 168690660 168690660 G A SLIT3 Intron 0.29 TCGA-22-1012-01 5 17275787 17275787 C T BASP1 Silent p.P154P 0.45 TCGA-22-1012-01 5 176084646 176084646 G T TSPAN17 Missense_Mutation p.V316F 0.21 deleterious_low_confidence(0.01) benign(0.017) TCGA-22-1012-01 5 179740888 179740888 G A GFPT2 Silent p.T450T 0.11 TCGA-22-1012-01 5 24593368 24593368 C A CDH10 Splice_Site p.X77_splice 0.52 TCGA-22-1012-01 5 24593369 24593369 C A CDH10 Missense_Mutation p.K77N 0.52 deleterious(0) benign(0.114) TCGA-22-1012-01 5 31534400 31534400 G T C5orf22 Missense_Mutation p.A35S 0.06 deleterious(0.01) probably_damaging(0.91) TCGA-22-1012-01 5 31553022 31553022 A T C5orf22 3'UTR 0.59 TCGA-22-1012-01 5 32789975 32789975 A G NPR3 3'UTR 0.07 TCGA-22-1012-01 5 33527346 33527346 G T ADAMTS12 Missense_Mutation p.H1578N 0.09 tolerated(0.59) benign(0.101) TCGA-22-1012-01 5 40981752 40981752 G A C7 3'UTR 0.54 TCGA-22-1012-01 5 43644885 43644885 G C NNT Missense_Mutation p.R424T 0.56 deleterious(0) possibly_damaging(0.642) TCGA-22-1012-01 5 6743891 6743891 G A PAPD7 Missense_Mutation p.E145K 0.06 deleterious(0.01) benign(0.42) TCGA-22-1012-01 6 100895250 100895250 G C SIM1 Missense_Mutation p.L298V 0.09 deleterious(0) probably_damaging(0.985) TCGA-22-1012-01 6 12749917 12749917 G T PHACTR1 Missense_Mutation p.A49S 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.567) TCGA-22-1012-01 6 127898557 127898557 C A C6orf58 Missense_Mutation p.A76E 0.06 tolerated(1) benign(0.015) TCGA-22-1012-01 6 132909787 132909787 C G TAAR5 3'UTR 0.07 TCGA-22-1012-01 6 159046773 159046773 G T TMEM181 Missense_Mutation p.V503L 0.15 deleterious(0.01) possibly_damaging(0.562) TCGA-22-1012-01 6 166574401 166574401 A C T Missense_Mutation p.W320G 0.04 deleterious(0.02) probably_damaging(0.999) TCGA-22-1012-01 6 30459090 30459099 CAGAAGTGGG - HLA-E Frame_Shift_Del p.K264Lfs*27 0.16 TCGA-22-1012-01 6 41773584 41773584 C A USP49 Missense_Mutation p.A380S 0.12 deleterious(0.04) probably_damaging(0.999) TCGA-22-1012-01 6 43410728 43410728 C T ABCC10 Silent p.L749L 0.07 TCGA-22-1012-01 6 46657453 46657464 CTGGATGGTGTA - TDRD6 In_Frame_Del p.L530_V533del 0.14 TCGA-22-1012-01 6 49754769 49754769 G A PGK2 Silent p.I44I 0.27 TCGA-22-1012-01 6 56483201 56483201 G A DST Intron 0.39 TCGA-22-1012-01 6 74229735 74229735 C G EEF1A1 Missense_Mutation p.K5N 0.26 deleterious_low_confidence(0.01) probably_damaging(0.933) TCGA-22-1012-01 6 76550324 76550324 T C MYO6 Silent p.F192F 0.21 TCGA-22-1012-01 6 90377791 90377791 C G MDN1 Missense_Mutation p.G4679A 0.08 probably_damaging(0.999) TCGA-22-1012-01 6 99852551 99852551 C G PNISR Missense_Mutation p.E344Q 0.14 deleterious(0) probably_damaging(0.954) TCGA-22-1012-01 7 120965422 120965422 G T WNT16 5'Flank 0.42 TCGA-22-1012-01 7 121653467 121653467 T A PTPRZ1 Missense_Mutation p.M1456K 0.36 tolerated_low_confidence(0.1) benign(0.002) TCGA-22-1012-01 7 121718032 121718032 C T AASS Missense_Mutation p.S841N 0.27 tolerated(0.09) benign(0.005) TCGA-22-1012-01 7 123599691 123599691 C T SPAM1 Missense_Mutation p.L400F 0.27 deleterious(0) probably_damaging(0.998) TCGA-22-1012-01 7 126544719 126544719 T A GRM8 Missense_Mutation p.Q249L 0.22 tolerated(0.22) probably_damaging(0.988) TCGA-22-1012-01 7 136700371 136700371 T A CHRM2 Missense_Mutation p.D253E 0.25 tolerated(1) benign(0.005) TCGA-22-1012-01 7 154379740 154379740 G T DPP6 Intron 0.17 TCGA-22-1012-01 7 19738155 19738155 C G TWISTNB Silent p.A267A 0.18 TCGA-22-1012-01 7 21604007 21604007 A C DNAH11 Missense_Mutation p.I396L 0.28 benign(0.046) TCGA-22-1012-01 7 31792854 31792854 T C PDE1C 3'UTR 0.19 TCGA-22-1012-01 7 32584372 32584372 A G AVL9 Missense_Mutation p.Y94C 0.36 deleterious(0) probably_damaging(0.994) TCGA-22-1012-01 7 43982788 43982788 C G UBE2D4 Intron 0.38 TCGA-22-1012-01 7 48338076 48338076 C A ABCA13 Missense_Mutation p.H3105N 0.22 possibly_damaging(0.467) TCGA-22-1012-01 7 5352353 5352353 C T TNRC18 Silent p.A2723A 0.26 TCGA-22-1012-01 7 72891486 72891486 T G BAZ1B Silent p.R769R 0.08 TCGA-22-1012-01 7 8790697 8790697 C A NXPH1 Missense_Mutation p.S38R 0.21 tolerated(0.37) benign(0.04) TCGA-22-1012-01 7 96747030 96747030 G A ACN9 5'UTR 0.33 TCGA-22-1012-01 8 101534833 101534833 C T ANKRD46 Splice_Site p.X212_splice 0.13 TCGA-22-1012-01 8 125035716 125035716 G T FER1L6 Missense_Mutation p.W722C 0.29 deleterious(0) possibly_damaging(0.861) TCGA-22-1012-01 8 125058096 125058096 A C FER1L6 Missense_Mutation p.E893A 0.25 tolerated(0.1) benign(0.012) TCGA-22-1012-01 8 140630900 140630900 G A KCNK9 Silent p.V242V 0.23 TCGA-22-1012-01 8 144893462 144893462 G T SCRIB Missense_Mutation p.D320E 0.12 probably_damaging(0.999) TCGA-22-1012-01 8 2824228 2824228 C T CSMD1 Missense_Mutation p.M2988I 0.16 benign(0.071) TCGA-22-1012-01 8 59409687 59409687 A T CYP7A1 Silent p.T128T 0.22 TCGA-22-1012-01 8 71044152 71044152 G A NCOA2 Nonsense_Mutation p.Q1082* 0.43 TCGA-22-1012-01 8 77768505 77768505 C A ZFHX4 Silent p.S3116S 0.10 TCGA-22-1012-01 8 98288785 98288785 C T TSPYL5 3'UTR 0.25 TCGA-22-1012-01 9 13110012 13110012 C A MPDZ Missense_Mutation p.A1932S 0.37 tolerated(0.09) benign(0.087) TCGA-22-1012-01 9 21974792 21974792 G T CDKN2A Nonsense_Mutation p.S12* 0.30 TCGA-22-1012-01 9 32541551 32541551 G A TOPORS Missense_Mutation p.S991L 0.03 deleterious_low_confidence(0.01) unknown(0) TCGA-22-1012-01 9 32631934 32631934 C T TAF1L Missense_Mutation p.R1215H 0.09 tolerated(0.08) benign(0.002) TCGA-22-1012-01 9 32632145 32632145 G A TAF1L Missense_Mutation p.R1145W 0.30 deleterious(0) possibly_damaging(0.847) TCGA-22-1012-01 X 100077295 100077295 C G CSTF2 Missense_Mutation p.Q65E 0.12 tolerated(0.08) possibly_damaging(0.623) TCGA-22-1012-01 X 100653447 100653447 T A GLA Missense_Mutation p.S304C 0.10 tolerated(0.08) benign(0.007) TCGA-22-1012-01 X 102193089 102193089 G T RAB40AL 3'UTR 0.33 TCGA-22-1012-01 X 107814652 107814652 G T COL4A5 Nonsense_Mutation p.G132* 0.10 TCGA-22-1012-01 X 107814653 107814653 G T COL4A5 Missense_Mutation p.G132V 0.10 unknown(0) TCGA-22-1012-01 X 108619187 108619187 C A GUCY2F Nonsense_Mutation p.E1090* 0.12 TCGA-22-1012-01 X 118220627 118220627 G T KIAA1210 Silent p.S1522S 0.13 TCGA-22-1012-01 X 118724761 118724761 C A NKRF Silent p.A224A 0.11 TCGA-22-1012-01 X 118724823 118724823 C A NKRF Nonsense_Mutation p.E204* 0.13 TCGA-22-1012-01 X 118979257 118979257 G T UPF3B Missense_Mutation p.Q125K 0.10 tolerated(1) benign(0.224) TCGA-22-1012-01 X 122598733 122598733 G T GRIA3 Silent p.V698V 0.10 TCGA-22-1012-01 X 129498796 129498796 C T SLC25A14 Intron 0.11 TCGA-22-1012-01 X 1407771 1407771 C T CSF2RA Nonsense_Mutation p.R155* 0.22 TCGA-22-1012-01 X 142795238 142795238 G A SPANXN2 Missense_Mutation p.S147F 0.10 tolerated(0.22) unknown(0) TCGA-22-1012-01 X 148037249 148037249 G C AFF2 Silent p.L558L 0.12 TCGA-22-1012-01 X 149905800 149905800 C - MTMR1 Frame_Shift_Del p.R444Efs*11 0.10 TCGA-22-1012-01 X 150573518 150573518 C A VMA21 Silent p.G98G 0.08 TCGA-22-1012-01 X 24751921 24751921 C G POLA1 Silent p.V601V 0.19 TCGA-22-1012-01 X 36103515 36103515 G T CHDC2 Missense_Mutation p.K167N 0.29 deleterious(0) probably_damaging(0.995) TCGA-22-1012-01 X 64734720 64734720 G A LAS1L Silent p.P687P 0.13 TCGA-22-1012-01 X 67432046 67432046 G T OPHN1 Silent p.A202A 0.07 TCGA-22-1012-01 X 68058546 68058546 C A EFNB1 Missense_Mutation p.P72H 0.12 deleterious(0.02) possibly_damaging(0.905) TCGA-22-1012-01 X 68058547 68058547 C T EFNB1 Silent p.P72P 0.12 TCGA-22-1012-01 X 68381405 68381405 T C PJA1 Silent p.A559A 0.12 TCGA-22-1012-01 X 69649804 69649804 C G GDPD2 Missense_Mutation p.R400G 0.08 tolerated(0.07) benign(0.111) TCGA-22-1012-01 X 78618612 78618612 A T ITM2A Missense_Mutation p.C90S 0.13 tolerated(0.4) benign(0.011) TCGA-22-1012-01 X 91138023 91138023 G T PCDH11X Intron 0.25 TCGA-22-1012-01 X 92928264 92928264 C A NAP1L3 Missense_Mutation p.A14S 0.11 tolerated_low_confidence(0.06) benign(0.261) TCGA-22-1012-01 X 9862559 9862559 G C SHROOM2 Missense_Mutation p.S204T 0.08 deleterious(0.02) benign(0.007) TCGA-22-1016-01 10 101370858 101370858 T C SLC25A28 Silent p.P281P 0.33 TCGA-22-1016-01 10 118314941 118314941 C G PNLIP Missense_Mutation p.P245A 0.14 deleterious(0) probably_damaging(1) TCGA-22-1016-01 10 118353900 118353900 C A PNLIPRP1 Intron 0.14 TCGA-22-1016-01 10 121677443 121677443 A T SEC23IP Missense_Mutation p.Y547F 0.15 deleterious(0) probably_damaging(0.998) TCGA-22-1016-01 10 124672393 124672393 T A FAM24A Missense_Mutation p.C81S 0.14 tolerated(0.27) probably_damaging(0.978) TCGA-22-1016-01 10 127806717 127806717 G T ADAM12 Missense_Mutation p.P168T 0.17 tolerated(0.08) benign(0.011) TCGA-22-1016-01 10 128974520 128974520 A T FAM196A Missense_Mutation p.V47E 0.14 deleterious(0) probably_damaging(0.999) TCGA-22-1016-01 10 135106147 135106147 C G TUBGCP2 Missense_Mutation p.S385T 0.11 tolerated(0.17) benign(0.327) TCGA-22-1016-01 10 27323831 27323831 T C ANKRD26 Missense_Mutation p.E1183G 0.20 deleterious(0) probably_damaging(0.97) TCGA-22-1016-01 10 43871752 43871752 T A FXYD4 3'UTR 0.19 TCGA-22-1016-01 10 45602095 45602095 C A RSU1P2 RNA 0.11 TCGA-22-1016-01 10 53893597 53893597 T A PRKG1 Intron 0.22 TCGA-22-1016-01 10 63170096 63170096 G A TMEM26 Missense_Mutation p.S364F 0.16 deleterious_low_confidence(0.01) benign(0.001) TCGA-22-1016-01 10 95719056 95719056 C G PIPSL RNA 0.28 TCGA-22-1016-01 10 96602727 96602727 C A CYP2C19 Missense_Mutation p.S365R 0.25 deleterious(0) probably_damaging(0.92) TCGA-22-1016-01 10 96602728 96602728 C A CYP2C19 Missense_Mutation p.L366M 0.25 deleterious(0.03) benign(0.257) TCGA-22-1016-01 10 97778957 97778957 C A CC2D2B Intron 0.12 TCGA-22-1016-01 11 102449824 102449824 C T MMP20 Missense_Mutation p.E433K 0.03 tolerated(0.19) benign(0.117) TCGA-22-1016-01 11 113650528 113650528 G A CLDN25 Missense_Mutation p.S4N 0.35 tolerated(0.47) benign(0.317) TCGA-22-1016-01 11 117303185 117303185 C A DSCAML1 Nonsense_Mutation p.E1748* 0.26 TCGA-22-1016-01 11 19901506 19901506 C G NAV2 Missense_Mutation p.H201Q 0.31 tolerated(0.26) benign(0.001) TCGA-22-1016-01 11 26353733 26353733 C A ANO3 5'UTR 0.43 TCGA-22-1016-01 11 27016314 27016314 C A FIBIN Silent p.R81R 0.28 TCGA-22-1016-01 11 32605423 32605423 G A EIF3M 5'UTR 0.30 TCGA-22-1016-01 11 3714580 3714580 T G NUP98 Missense_Mutation p.Q1398P 0.16 tolerated(0.3) benign(0.444) TCGA-22-1016-01 11 40135910 40135910 T A LRRC4C 3'UTR 0.30 TCGA-22-1016-01 11 44102757 44102757 G T ACCS Missense_Mutation p.G333V 0.10 deleterious(0.02) probably_damaging(0.977) TCGA-22-1016-01 11 4566615 4566615 G T OR52M1 Missense_Mutation p.L65F 0.32 deleterious(0) probably_damaging(0.999) TCGA-22-1016-01 11 47305939 47305939 G C MADD Silent p.L660L 0.12 TCGA-22-1016-01 11 49175785 49175785 G T FOLH1 Nonsense_Mutation p.S628* 0.03 TCGA-22-1016-01 11 49830158 49830158 G T RP11-707M1.1 RNA 0.16 TCGA-22-1016-01 11 5345100 5345100 C A OR51B2 Missense_Mutation p.G143V 0.25 deleterious(0.01) possibly_damaging(0.529) TCGA-22-1016-01 11 5345101 5345101 C A OR51B2 Nonsense_Mutation p.G143* 0.24 TCGA-22-1016-01 11 55063046 55063046 G T TRIM51HP RNA 0.17 TCGA-22-1016-01 11 55563077 55563077 C T OR5D14 Missense_Mutation p.L16F 0.32 deleterious(0.02) possibly_damaging(0.452) TCGA-22-1016-01 11 55587837 55587837 C T OR5D18 Silent p.S244S 0.16 TCGA-22-1016-01 11 55655637 55655637 A G TRIM51 Missense_Mutation p.N213D 0.21 tolerated(0.1) benign(0.083) TCGA-22-1016-01 11 55944867 55944867 C T OR5J2 Silent p.S258S 0.26 TCGA-22-1016-01 11 57583454 57583454 A T CTNND1 Missense_Mutation p.Q959L 0.20 tolerated_low_confidence(0.31) benign(0.001) TCGA-22-1016-01 11 6048063 6048063 G T OR56A1 Missense_Mutation p.P291H 0.30 deleterious(0) probably_damaging(0.924) TCGA-22-1016-01 11 63143203 63143203 G C SLC22A9 Missense_Mutation p.S306T 0.13 deleterious(0) benign(0.001) TCGA-22-1016-01 11 65124390 65124390 C A TIGD3 Missense_Mutation p.P371T 0.28 tolerated(0.11) benign(0.079) TCGA-22-1016-01 11 66287220 66287220 G A BBS1 Splice_Site p.X241_splice 0.16 TCGA-22-1016-01 11 7079636 7079636 T C NLRP14 Missense_Mutation p.M863T 0.31 deleterious(0) benign(0.122) TCGA-22-1016-01 11 71942192 71942192 C T INPPL1 Missense_Mutation p.R486C 0.03 deleterious(0.04) possibly_damaging(0.726) TCGA-22-1016-01 11 72539536 72539536 C G ATG16L2 Missense_Mutation p.N535K 0.14 deleterious(0) possibly_damaging(0.735) TCGA-22-1016-01 11 82644184 82644184 G A C11orf82 Missense_Mutation p.D602N 0.25 tolerated(0.22) benign(0.059) TCGA-22-1016-01 11 89532918 89532918 G T TRIM49 Silent p.I275I 0.18 TCGA-22-1016-01 11 93806196 93806196 C G HEPHL1 Missense_Mutation p.S413C 0.36 deleterious(0) probably_damaging(0.977) TCGA-22-1016-01 12 100043063 100043063 T A FAM71C Intron 0.25 TCGA-22-1016-01 12 100453798 100453798 G A UHRF1BP1L Nonsense_Mutation p.Q525* 0.26 TCGA-22-1016-01 12 108589469 108589469 G T WSCD2 5'UTR 0.27 TCGA-22-1016-01 12 112191650 112191650 C T ACAD10 Silent p.R995R 0.29 TCGA-22-1016-01 12 11546702 11546702 G - PRB2 Frame_Shift_Del p.Q104Kfs*327 0.09 TCGA-22-1016-01 12 122481907 122481907 G T BCL7A Missense_Mutation p.E129D 0.15 tolerated(0.35) benign(0.009) TCGA-22-1016-01 12 123089137 123089137 T C KNTC1 Missense_Mutation p.F1710L 0.22 tolerated(0.17) probably_damaging(0.982) TCGA-22-1016-01 12 129285415 129285415 G C SLC15A4 Missense_Mutation p.I466M 0.25 deleterious(0.01) possibly_damaging(0.9) TCGA-22-1016-01 12 130827641 130827641 C A PIWIL1 Nonsense_Mutation p.S62* 0.31 TCGA-22-1016-01 12 26868762 26868762 C G ITPR2 Missense_Mutation p.A211P 0.19 tolerated(0.09) possibly_damaging(0.864) TCGA-22-1016-01 12 44913981 44913981 C A NELL2 Missense_Mutation p.C786F 0.12 deleterious(0) probably_damaging(0.998) TCGA-22-1016-01 12 45097609 45097609 G A NELL2 Silent p.N456N 0.35 TCGA-22-1016-01 12 48238763 48238763 C T VDR Silent p.A400A 0.13 TCGA-22-1016-01 12 48371186 48371186 C A COL2A1 Missense_Mutation p.V1064L 0.28 unknown(0) TCGA-22-1016-01 12 49230390 49230390 G A DDX23 Missense_Mutation p.P400S 0.15 tolerated(0.51) benign(0.005) TCGA-22-1016-01 12 49431142 49431142 G A KMT2D Nonsense_Mutation p.Q3333* 0.41 TCGA-22-1016-01 12 49579509 49579509 G A TUBA1A Missense_Mutation p.R214C 0.28 tolerated_low_confidence(0.09) benign(0.06) TCGA-22-1016-01 12 49918540 49918540 G C SPATS2 Missense_Mutation p.S396T 0.13 tolerated(0.29) benign(0.103) TCGA-22-1016-01 12 49958314 49958314 C A MCRS1 Silent p.R182R 0.24 TCGA-22-1016-01 12 56648716 56648716 G T ANKRD52 Missense_Mutation p.N161K 0.11 tolerated(0.48) benign(0.032) TCGA-22-1016-01 12 57881814 57881814 C A MARS 5'UTR 0.32 TCGA-22-1016-01 12 6776898 6776898 C T ZNF384 Silent p.E572E 0.10 TCGA-22-1016-01 12 71050497 71050497 G T PTPRR Missense_Mutation p.L623I 0.17 deleterious(0.01) probably_damaging(0.943) TCGA-22-1016-01 12 72176356 72176356 A T RAB21 Silent p.A151A 0.26 TCGA-22-1016-01 12 72332809 72332809 C T TPH2 Missense_Mutation p.R15W 0.12 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-22-1016-01 12 7457012 7457012 C A ACSM4 Missense_Mutation p.L29I 0.47 tolerated(0.27) benign(0.002) TCGA-22-1016-01 12 7805100 7805100 G - APOBEC1 Frame_Shift_Del p.Q126Kfs*14 0.37 TCGA-22-1016-01 12 80699411 80699411 C G OTOGL Missense_Mutation p.T1081S 0.19 tolerated(0.42) probably_damaging(0.998) TCGA-22-1016-01 12 89745570 89745570 G A DUSP6 Missense_Mutation p.R83W 0.36 deleterious(0) probably_damaging(0.989) TCGA-22-1016-01 12 9010650 9010650 C G A2ML1 Silent p.P1072P 0.56 TCGA-22-1016-01 12 91449570 91449570 G A KERA Silent p.S163S 0.15 TCGA-22-1016-01 13 25280467 25280467 G T ATP12A Missense_Mutation p.V685L 0.17 deleterious(0.02) probably_damaging(0.995) TCGA-22-1016-01 13 35672485 35672485 G T NBEA Missense_Mutation p.M541I 0.38 tolerated(0.07) probably_damaging(0.989) TCGA-22-1016-01 13 39541076 39541076 G T STOML3 Missense_Mutation p.S254R 0.31 deleterious(0.02) benign(0.018) TCGA-22-1016-01 13 39596551 39596551 T A PROSER1 Splice_Site p.X215_splice 0.27 TCGA-22-1016-01 13 41507475 41507475 T C ELF1 3'UTR 0.36 TCGA-22-1016-01 13 92380805 92380805 G T GPC5 Missense_Mutation p.R347L 0.31 tolerated(0.19) benign(0.016) TCGA-22-1016-01 13 96555254 96555254 C A UGGT2 Nonsense_Mutation p.E786* 0.29 TCGA-22-1016-01 14 102504837 102504837 A T DYNC1H1 Missense_Mutation p.N3650I 0.13 probably_damaging(0.999) TCGA-22-1016-01 14 106453066 106453066 G T IGHV1-2 Missense_Mutation p.A14D 0.37 deleterious(0.02) probably_damaging(0.961) TCGA-22-1016-01 14 19378119 19378119 G T OR11H12 Missense_Mutation p.V176F 0.06 tolerated(0.37) possibly_damaging(0.774) TCGA-22-1016-01 14 20711839 20711839 C G OR11H4 Missense_Mutation p.P297A 0.18 deleterious(0) probably_damaging(0.945) TCGA-22-1016-01 14 23873957 23873957 C T MYH6 Missense_Mutation p.G202D 0.22 deleterious(0.01) possibly_damaging(0.651) TCGA-22-1016-01 14 45373614 45373614 G T C14orf28 Nonsense_Mutation p.E211* 0.15 TCGA-22-1016-01 14 50623787 50623787 T A SOS2 Nonsense_Mutation p.K663* 0.21 TCGA-22-1016-01 14 57052579 57052579 G T TMEM260 Missense_Mutation p.C98F 0.12 deleterious(0.01) probably_damaging(0.924) TCGA-22-1016-01 14 69813862 69813862 C A GALNT16 Silent p.I459I 0.19 TCGA-22-1016-01 14 75017795 75017795 C A LTBP2 Missense_Mutation p.R553L 0.15 deleterious(0) benign(0.343) TCGA-22-1016-01 14 77944917 77944917 C G ISM2 Splice_Site p.X372_splice 0.25 TCGA-22-1016-01 14 81574807 81574807 C A TSHR Intron 0.12 TCGA-22-1016-01 14 88789090 88789090 C A KCNK10 Splice_Site p.X18_splice 0.38 TCGA-22-1016-01 14 90744565 90744565 A G NRDE2 3'UTR 0.50 TCGA-22-1016-01 15 100871232 100871232 G C ADAMTS17 Missense_Mutation p.Q160E 0.26 tolerated(1) benign(0.13) TCGA-22-1016-01 15 102294662 102294662 C T DNM1P47 RNA 0.16 TCGA-22-1016-01 15 23108795 23108795 C A RP11-566K19.6 RNA 0.13 TCGA-22-1016-01 15 25222129 25222129 G T SNRPN Missense_Mutation p.A125S 0.18 tolerated(0.1) benign(0.282) TCGA-22-1016-01 15 25458697 25458697 C A SNORD115-22 3'Flank 0.27 TCGA-22-1016-01 15 28116342 28116342 C A OCA2 Silent p.L734L 0.07 TCGA-22-1016-01 15 33925293 33925293 C A RYR3 Missense_Mutation p.T1004N 0.14 probably_damaging(1) TCGA-22-1016-01 15 41796998 41796998 C T LTK Missense_Mutation p.G698D 0.12 deleterious_low_confidence(0) benign(0.113) TCGA-22-1016-01 15 41865899 41865899 G T TYRO3 Missense_Mutation p.W723L 0.08 deleterious(0) probably_damaging(0.994) TCGA-22-1016-01 15 41865900 41865900 G T TYRO3 Missense_Mutation p.W723C 0.08 deleterious(0) probably_damaging(1) TCGA-22-1016-01 15 42439472 42439472 C A PLA2G4F Missense_Mutation p.Q423H 0.16 deleterious(0.01) possibly_damaging(0.852) TCGA-22-1016-01 15 50822029 50822029 G A USP50 Missense_Mutation p.R301W 0.12 deleterious(0.02) probably_damaging(0.932) TCGA-22-1016-01 15 59344503 59344503 G A RNF111 Splice_Site p.X294_splice 0.16 TCGA-22-1016-01 15 74425284 74425284 C T ISLR2 Silent p.I63I 0.19 TCGA-22-1016-01 15 74425431 74425431 C T ISLR2 Silent p.S112S 0.10 TCGA-22-1016-01 15 74425535 74425535 C T ISLR2 Missense_Mutation p.P147L 0.11 tolerated(0.06) probably_damaging(0.999) TCGA-22-1016-01 15 74425602 74425602 G T ISLR2 Silent p.A169A 0.27 TCGA-22-1016-01 15 74425682 74425682 C T ISLR2 Missense_Mutation p.A196V 0.08 tolerated(0.27) probably_damaging(0.985) TCGA-22-1016-01 15 74425689 74425689 C T ISLR2 Silent p.S198S 0.08 TCGA-22-1016-01 15 74425918 74425918 C T ISLR2 Nonsense_Mutation p.Q275* 0.06 TCGA-22-1016-01 15 75013047 75013047 T A CYP1A1 Missense_Mutation p.K441M 0.13 deleterious(0) probably_damaging(0.966) TCGA-22-1016-01 15 85164479 85164479 G A ZSCAN2 Silent p.T351T 0.18 TCGA-22-1016-01 15 90771643 90771643 G T SEMA4B Missense_Mutation p.C761F 0.16 tolerated(0.17) benign(0.137) TCGA-22-1016-01 15 91312729 91312729 C T BLM Missense_Mutation p.S823F 0.07 deleterious(0) possibly_damaging(0.707) TCGA-22-1016-01 16 10996530 10996530 C G CIITA Missense_Mutation p.S215C 0.29 tolerated(0.11) possibly_damaging(0.827) TCGA-22-1016-01 16 11650373 11650373 T A LITAF Missense_Mutation p.N72Y 0.13 deleterious(0.02) possibly_damaging(0.736) TCGA-22-1016-01 16 1394641 1394641 G T BAIAP3 Missense_Mutation p.D602Y 0.27 deleterious(0) probably_damaging(0.926) TCGA-22-1016-01 16 19475265 19475265 C T TMC5 Silent p.F468F 0.05 TCGA-22-1016-01 16 20471532 20471532 C A ACSM2A Silent p.S32S 0.36 TCGA-22-1016-01 16 21847881 21847881 T A NPIPB4 Silent p.S609S 0.16 TCGA-22-1016-01 16 22385551 22385551 C A CDR2 Splice_Site p.X27_splice 0.13 TCGA-22-1016-01 16 23208724 23208724 G C SCNN1G Missense_Mutation p.M351I 0.20 deleterious(0.03) benign(0.213) TCGA-22-1016-01 16 2549416 2549416 A C TBC1D24 Missense_Mutation p.K401Q 0.23 tolerated(0.41) benign(0.081) TCGA-22-1016-01 16 26147398 26147398 A T HS3ST4 Silent p.P400P 0.24 TCGA-22-1016-01 16 29675508 29675508 G - SPN Frame_Shift_Del p.A154Qfs*54 0.28 TCGA-22-1016-01 16 58077461 58077461 C T MMP15 Silent p.Y500Y 0.12 TCGA-22-1016-01 16 67765377 67765377 T G RANBP10 Missense_Mutation p.Q296P 0.20 deleterious(0) probably_damaging(0.962) TCGA-22-1016-01 16 68012234 68012234 G A DPEP3 Silent p.L233L 0.10 TCGA-22-1016-01 16 68835620 68835620 C T CDH1 Missense_Mutation p.L71F 0.17 deleterious(0) benign(0.128) TCGA-22-1016-01 16 81314536 81314536 A G BCMO1 Silent p.Q392Q 0.06 TCGA-22-1016-01 16 919971 919971 C T LMF1 Missense_Mutation p.C443Y 0.38 deleterious(0) probably_damaging(0.996) TCGA-22-1016-01 17 10399327 10399327 C T MYH1 Silent p.R1703R 0.30 TCGA-22-1016-01 17 1438521 1438521 G C PITPNA Missense_Mutation p.F200L 0.16 deleterious(0) probably_damaging(0.996) TCGA-22-1016-01 17 15532053 15532053 C T TRIM16 Missense_Mutation p.C524Y 0.04 deleterious(0.01) probably_damaging(0.979) TCGA-22-1016-01 17 34182401 34182401 A T C17orf66 Nonsense_Mutation p.L460* 0.34 TCGA-22-1016-01 17 38451705 38451705 G A CDC6 Missense_Mutation p.C394Y 0.35 deleterious(0) probably_damaging(1) TCGA-22-1016-01 17 39190672 39190672 G T KRTAP1-3 Nonsense_Mutation p.C134* 0.38 TCGA-22-1016-01 17 39975846 39975846 C A FKBP10 Missense_Mutation p.Q328K 0.25 tolerated(0.51) benign(0.141) TCGA-22-1016-01 17 44770427 44770427 A C NSF Silent p.L368L 0.11 TCGA-22-1016-01 17 48777095 48777095 G A ANKRD40 Missense_Mutation p.P148L 0.31 tolerated(0.35) benign(0.027) TCGA-22-1016-01 17 73230817 73230817 G A NUP85 Silent p.R567R 0.04 TCGA-22-1016-01 17 73230872 73230872 G A NUP85 Missense_Mutation p.E586K 0.04 deleterious(0.01) possibly_damaging(0.728) TCGA-22-1016-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.31 deleterious(0) probably_damaging(1) TCGA-22-1016-01 19 10157507 10157507 A T C3P1 RNA 0.30 TCGA-22-1016-01 19 19349112 19349112 C T NCAN Missense_Mutation p.R1101C 0.36 deleterious(0) probably_damaging(0.993) TCGA-22-1016-01 19 22171626 22171626 C G ZNF208 Missense_Mutation p.R30T 0.31 deleterious(0.01) possibly_damaging(0.594) TCGA-22-1016-01 19 22941436 22941436 G C ZNF99 Missense_Mutation p.C425W 0.41 deleterious(0) possibly_damaging(0.881) TCGA-22-1016-01 19 23405543 23405543 C A ZNF724P Nonsense_Mutation p.G502* 0.31 TCGA-22-1016-01 19 31768009 31768009 T A TSHZ3 Missense_Mutation p.N897I 0.35 deleterious(0) probably_damaging(0.991) TCGA-22-1016-01 19 34263302 34263302 C A CHST8 Silent p.S203S 0.46 TCGA-22-1016-01 19 35250252 35250252 G C ZNF599 Missense_Mutation p.A485G 0.10 tolerated(1) benign(0.014) TCGA-22-1016-01 19 35850518 35850518 C A FFAR3 Missense_Mutation p.N242K 0.24 deleterious(0) probably_damaging(0.999) TCGA-22-1016-01 19 3623935 3623935 C A CACTIN Silent p.A131A 0.16 TCGA-22-1016-01 19 37005989 37005989 C A ZNF260 Missense_Mutation p.G51V 0.44 deleterious(0) benign(0.218) TCGA-22-1016-01 19 37870113 37870113 T C ZNF527 Missense_Mutation p.V42A 0.29 deleterious(0) benign(0.028) TCGA-22-1016-01 19 40433896 40433896 G T FCGBP Missense_Mutation p.P125T 0.36 possibly_damaging(0.452) TCGA-22-1016-01 19 42863288 42863288 G T MEGF8 Silent p.G1727G 0.22 TCGA-22-1016-01 19 43979544 43979544 C A PHLDB3 3'UTR 0.27 TCGA-22-1016-01 19 44740736 44740736 G T ZNF227 Missense_Mutation p.C718F 0.16 deleterious(0) probably_damaging(1) TCGA-22-1016-01 19 52497156 52497156 C A ZNF615 Missense_Mutation p.Q402H 0.26 deleterious(0.04) probably_damaging(0.942) TCGA-22-1016-01 19 52714673 52714673 G A PPP2R1A Missense_Mutation p.R144H 0.48 deleterious(0) probably_damaging(0.983) TCGA-22-1016-01 19 52909268 52909268 A T ZNF528 Missense_Mutation p.R42W 0.24 deleterious(0.03) possibly_damaging(0.804) TCGA-22-1016-01 19 54081100 54081100 A G ZNF331 Missense_Mutation p.H429R 0.27 deleterious(0) probably_damaging(0.985) TCGA-22-1016-01 19 54656311 54656311 G T CNOT3 Nonsense_Mutation p.E618* 0.20 TCGA-22-1016-01 19 55087569 55087569 G T LILRA2 Silent p.V416V 0.32 TCGA-22-1016-01 19 55222008 55222008 G T AC098784.2 3'Flank 0.23 TCGA-22-1016-01 19 55450872 55450872 C A NLRP7 Missense_Mutation p.G439W 0.17 deleterious(0) probably_damaging(0.998) TCGA-22-1016-01 19 56113998 56113998 C T ZNF524 Silent p.L174L 0.27 TCGA-22-1016-01 19 58385131 58385131 T A ZNF814 Missense_Mutation p.T543S 0.43 tolerated(0.2) benign(0.393) TCGA-22-1016-01 19 8953366 8953366 T A MBD3L1 Missense_Mutation p.S4R 0.30 deleterious(0) benign(0.067) TCGA-22-1016-01 19 9578580 9578580 T A ZNF560 Missense_Mutation p.Y348F 0.20 tolerated(0.13) possibly_damaging(0.874) TCGA-22-1016-01 1 110607409 110607409 G T ALX3 Missense_Mutation p.L132M 0.17 deleterious(0) probably_damaging(0.998) TCGA-22-1016-01 1 110607410 110607410 G T ALX3 Missense_Mutation p.S131R 0.17 tolerated(0.1) benign(0.004) TCGA-22-1016-01 1 110709739 110709739 G A SLC6A17 Nonsense_Mutation p.W63* 0.12 TCGA-22-1016-01 1 114969855 114969855 C G TRIM33 Missense_Mutation p.G455A 0.11 deleterious(0.04) probably_damaging(0.996) TCGA-22-1016-01 1 115229390 115229390 C A AMPD1 Missense_Mutation p.Q152H 0.19 deleterious(0.04) benign(0.005) TCGA-22-1016-01 1 115399274 115399274 T C SYCP1 Silent p.D63D 0.23 TCGA-22-1016-01 1 117559882 117559882 G T CD101 Missense_Mutation p.G467C 0.16 deleterious(0) probably_damaging(1) TCGA-22-1016-01 1 12309329 12309329 C T VPS13D Missense_Mutation p.P166L 0.23 probably_damaging(0.991) TCGA-22-1016-01 1 142713105 142713105 C A RP11-417J8.6 RNA 0.18 TCGA-22-1016-01 1 143767531 143767531 G T PPIAL4G Missense_Mutation p.N106K 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.512) TCGA-22-1016-01 1 147380457 147380457 C A GJA8 Missense_Mutation p.D125E 0.30 tolerated(0.3) benign(0.005) TCGA-22-1016-01 1 147380458 147380458 C A GJA8 Missense_Mutation p.Q126K 0.31 tolerated(0.5) benign(0.017) TCGA-22-1016-01 1 147955230 147955230 G C PPIAL4A Missense_Mutation p.L39V 0.20 deleterious_low_confidence(0.01) benign(0.234) TCGA-22-1016-01 1 150048324 150048324 G C VPS45 Silent p.V101V 0.18 TCGA-22-1016-01 1 152128744 152128744 T A RPTN Silent p.L277L 0.21 TCGA-22-1016-01 1 152538465 152538465 C T LCE3E Missense_Mutation p.G74S 0.21 deleterious_low_confidence(0.02) unknown(0) TCGA-22-1016-01 1 154316369 154316369 G T ATP8B2 Nonsense_Mutation p.E620* 0.31 TCGA-22-1016-01 1 155240753 155240753 T A CLK2 Missense_Mutation p.R6W 0.24 deleterious(0) unknown(0) TCGA-22-1016-01 1 156877949 156877949 T A PEAR1 Missense_Mutation p.F311Y 0.13 tolerated(1) benign(0.02) TCGA-22-1016-01 1 157667071 157667071 G T FCRL3 Missense_Mutation p.L235I 0.18 tolerated(0.07) probably_damaging(0.998) TCGA-22-1016-01 1 157773749 157773749 G T FCRL1 Missense_Mutation p.P69T 0.20 deleterious(0.01) probably_damaging(0.964) TCGA-22-1016-01 1 157804345 157804345 G A CD5L Silent p.R190R 0.22 TCGA-22-1016-01 1 158647593 158647593 C A SPTA1 Nonsense_Mutation p.E282* 0.16 TCGA-22-1016-01 1 158647594 158647594 C A SPTA1 Missense_Mutation p.K281N 0.16 tolerated(0.42) possibly_damaging(0.744) TCGA-22-1016-01 1 159277747 159277747 A T FCER1A 3'UTR 0.21 TCGA-22-1016-01 1 16257530 16257530 G C SPEN Missense_Mutation p.E1599Q 0.05 probably_damaging(0.993) TCGA-22-1016-01 1 169541508 169541508 C A F5 Missense_Mutation p.K108N 0.23 deleterious(0.01) probably_damaging(0.984) TCGA-22-1016-01 1 169581473 169581473 G T SELP Missense_Mutation p.P315T 0.21 tolerated(0.21) possibly_damaging(0.462) TCGA-22-1016-01 1 175097181 175097181 G C TNN Missense_Mutation p.G1020A 0.16 tolerated(0.1) benign(0.262) TCGA-22-1016-01 1 175328799 175328799 C T TNR Missense_Mutation p.A975T 0.23 deleterious(0) benign(0.142) TCGA-22-1016-01 1 175331844 175331844 G A TNR Missense_Mutation p.R937W 0.30 deleterious(0.02) probably_damaging(0.994) TCGA-22-1016-01 1 183543663 183543663 G T NCF2 Missense_Mutation p.P154T 0.27 deleterious(0.04) benign(0.041) TCGA-22-1016-01 1 186276748 186276748 G A PRG4 Missense_Mutation p.A633T 0.22 unknown(0) TCGA-22-1016-01 1 196670561 196670561 C A CFH Intron 0.30 TCGA-22-1016-01 1 210273672 210273672 C T SYT14 Missense_Mutation p.R389W 0.21 deleterious(0) probably_damaging(1) TCGA-22-1016-01 1 210948737 210948737 G T KCNH1 Missense_Mutation p.H689N 0.24 tolerated(1) benign(0.001) TCGA-22-1016-01 1 215853703 215853703 C A USH2A Missense_Mutation p.A4028S 0.23 possibly_damaging(0.483) TCGA-22-1016-01 1 216017726 216017726 A C USH2A Nonsense_Mutation p.Y3056* 0.27 TCGA-22-1016-01 1 220792066 220792066 T C MARK1 Missense_Mutation p.V293A 0.27 deleterious(0) probably_damaging(0.985) TCGA-22-1016-01 1 226496871 226496871 C G LIN9 Missense_Mutation p.Q6H 0.26 deleterious_low_confidence(0) possibly_damaging(0.585) TCGA-22-1016-01 1 23689210 23689210 T A ZNF436 Missense_Mutation p.H222L 0.24 deleterious(0) possibly_damaging(0.498) TCGA-22-1016-01 1 236894586 236894586 G T ACTN2 Silent p.L223L 0.21 TCGA-22-1016-01 1 240497454 240497454 G T FMN2 Missense_Mutation p.D1564Y 0.23 probably_damaging(0.998) TCGA-22-1016-01 1 248039387 248039387 G A TRIM58 Missense_Mutation p.G353R 0.22 deleterious(0) probably_damaging(0.985) TCGA-22-1016-01 1 32841956 32841956 C T BSDC1 Missense_Mutation p.E372K 0.29 tolerated(0.06) possibly_damaging(0.687) TCGA-22-1016-01 1 36941154 36941154 A T CSF3R Missense_Mutation p.L62Q 0.14 deleterious(0.05) benign(0.034) TCGA-22-1016-01 1 53073986 53073986 A T GPX7 Silent p.P151P 0.29 TCGA-22-1016-01 1 57349309 57349309 A T C8A Silent p.S270S 0.24 TCGA-22-1016-01 1 6169932 6169932 C T CHD5 Missense_Mutation p.C1834Y 0.08 deleterious(0) possibly_damaging(0.756) TCGA-22-1016-01 1 65858250 65858250 C G DNAJC6 Silent p.V535V 0.18 TCGA-22-1016-01 1 79102885 79102885 T A IFI44L Missense_Mutation p.C349S 0.24 deleterious(0.02) possibly_damaging(0.747) TCGA-22-1016-01 1 79120789 79120789 T C IFI44 Silent p.I195I 0.11 TCGA-22-1016-01 1 79392575 79392575 C G ELTD1 Missense_Mutation p.R360P 0.31 tolerated(0.15) benign(0.058) TCGA-22-1016-01 1 84874070 84874070 G C DNASE2B Intron 0.22 TCGA-22-1016-01 1 85624609 85624609 C T SYDE2 Missense_Mutation p.E1137K 0.28 tolerated(0.16) benign(0.003) TCGA-22-1016-01 1 94047862 94047862 C T BCAR3 Missense_Mutation p.C561Y 0.14 deleterious(0) probably_damaging(0.996) TCGA-22-1016-01 20 13765713 13765713 A T NDUFAF5 5'UTR 0.27 TCGA-22-1016-01 20 2398084 2398084 C T TGM6 Silent p.L515L 0.36 TCGA-22-1016-01 20 39990768 39990768 G A EMILIN3 Silent p.L481L 0.23 TCGA-22-1016-01 20 42694707 42694707 A T TOX2 Missense_Mutation p.Q439L 0.37 deleterious(0) probably_damaging(0.961) TCGA-22-1016-01 20 42788378 42788378 G T JPH2 Missense_Mutation p.T350N 0.21 deleterious(0.03) benign(0.112) TCGA-22-1016-01 20 48522404 48522404 C G SPATA2 Missense_Mutation p.G439R 0.21 tolerated(0.28) possibly_damaging(0.696) TCGA-22-1016-01 20 57768092 57768092 C - ZNF831 Frame_Shift_Del p.Q674Kfs*31 0.33 TCGA-22-1016-01 20 57829194 57829194 C A ZNF831 Missense_Mutation p.S1477Y 0.38 deleterious(0.03) benign(0.364) TCGA-22-1016-01 20 61942764 61942764 G T COL20A1 Missense_Mutation p.R471L 0.36 tolerated(0.26) benign(0.015) TCGA-22-1016-01 21 31798006 31798006 G A KRTAP13-3 Silent p.P75P 0.25 TCGA-22-1016-01 22 36705391 36705391 A C MYH9 Missense_Mutation p.N593K 0.22 probably_damaging(0.963) TCGA-22-1016-01 22 50654264 50654264 G A SELO Silent p.L490L 0.06 TCGA-22-1016-01 22 50705455 50705455 C A MAPK11 Missense_Mutation p.R173L 0.28 deleterious(0) possibly_damaging(0.819) TCGA-22-1016-01 2 102636172 102636172 G T IL1R2 Missense_Mutation p.D196Y 0.16 deleterious(0.01) possibly_damaging(0.849) TCGA-22-1016-01 2 125261909 125261909 C A CNTNAP5 Missense_Mutation p.P367H 0.10 deleterious(0) probably_damaging(0.999) TCGA-22-1016-01 2 128030506 128030506 C A ERCC3 Nonsense_Mutation p.E588* 0.17 TCGA-22-1016-01 2 136566200 136566200 C A LCT Silent p.S1239S 0.14 TCGA-22-1016-01 2 136617013 136617013 C A MCM6 Splice_Site p.X407_splice 0.15 TCGA-22-1016-01 2 136873423 136873423 C T CXCR4 Silent p.K29K 0.19 TCGA-22-1016-01 2 141643896 141643896 C A LRP1B Nonsense_Mutation p.E1259* 0.10 TCGA-22-1016-01 2 145158831 145158831 C A ZEB2 Missense_Mutation p.C284F 0.30 deleterious(0) probably_damaging(0.997) TCGA-22-1016-01 2 162834234 162834234 C T SLC4A10 Missense_Mutation p.S1116F 0.10 deleterious(0.04) unknown(0) TCGA-22-1016-01 2 170465179 170465179 A G PPIG Splice_Site p.X97_splice 0.32 TCGA-22-1016-01 2 173891408 173891408 T C RAPGEF4 Missense_Mutation p.F788L 0.13 deleterious(0.03) probably_damaging(0.975) TCGA-22-1016-01 2 177033895 177033895 A G HOXD3 Missense_Mutation p.Q18R 0.13 deleterious(0.01) possibly_damaging(0.775) TCGA-22-1016-01 2 179414904 179414904 G A TTN Missense_Mutation p.P30554L 0.30 TCGA-22-1016-01 2 179479155 179479155 A C TTN Intron 0.35 TCGA-22-1016-01 2 179641375 179641375 A T TTN Missense_Mutation p.L1739H 0.07 TCGA-22-1016-01 2 185800578 185800578 C A ZNF804A Missense_Mutation p.S152Y 0.19 tolerated(0.85) probably_damaging(0.986) TCGA-22-1016-01 2 185801937 185801937 A T ZNF804A Missense_Mutation p.H605L 0.33 tolerated(0.25) benign(0.01) TCGA-22-1016-01 2 196759835 196759835 G C DNAH7 Missense_Mutation p.F1587L 0.19 tolerated(0.19) benign(0.036) TCGA-22-1016-01 2 196765006 196765006 C A DNAH7 Missense_Mutation p.K1516N 0.20 deleterious(0) probably_damaging(1) TCGA-22-1016-01 2 202488918 202488918 C A TMEM237 3'UTR 0.11 TCGA-22-1016-01 2 204571391 204571391 T C CD28 5'UTR 0.13 TCGA-22-1016-01 2 209358071 209358071 G T PTH2R Missense_Mutation p.R447I 0.20 tolerated(0.06) probably_damaging(0.94) TCGA-22-1016-01 2 220286269 220286269 G C DES Missense_Mutation p.G411R 0.10 deleterious(0) possibly_damaging(0.833) TCGA-22-1016-01 2 227662673 227662673 C A IRS1 Missense_Mutation p.S261I 0.18 deleterious(0.01) probably_damaging(0.992) TCGA-22-1016-01 2 228846552 228846552 G A SPHKAP Missense_Mutation p.H1662Y 0.15 deleterious(0.01) possibly_damaging(0.904) TCGA-22-1016-01 2 238978060 238978060 G T SCLY Silent p.S150S 0.22 TCGA-22-1016-01 2 25013199 25013199 A T PTRHD1 3'UTR 0.28 TCGA-22-1016-01 2 27346767 27346767 G T ABHD1 5'UTR 0.24 TCGA-22-1016-01 2 27426649 27426649 G C SLC5A6 Silent p.L364L 0.04 TCGA-22-1016-01 2 29084171 29084171 C G TRMT61B Missense_Mutation p.G269A 0.20 deleterious(0.01) probably_damaging(0.954) TCGA-22-1016-01 2 31598422 31598422 T A XDH Splice_Site p.X476_splice 0.30 TCGA-22-1016-01 2 31605990 31605990 C T XDH Silent p.L305L 0.04 TCGA-22-1016-01 2 44078926 44078926 C T ABCG8 Missense_Mutation p.P176S 0.18 deleterious(0.01) possibly_damaging(0.764) TCGA-22-1016-01 2 50779808 50779808 C T NRXN1 Missense_Mutation p.G599D 0.25 deleterious(0) probably_damaging(0.999) TCGA-22-1016-01 2 55825555 55825555 C A SMEK2 Missense_Mutation p.L306F 0.22 deleterious(0) benign(0.394) TCGA-22-1016-01 2 68385526 68385526 A G PNO1 Silent p.E74E 0.12 TCGA-22-1016-01 2 68962223 68962223 A T ARHGAP25 5'UTR 0.22 TCGA-22-1016-01 2 7164553 7164553 G T RNF144A Missense_Mutation p.C188F 0.21 deleterious(0) probably_damaging(0.986) TCGA-22-1016-01 2 80136857 80136857 G T CTNNA2 Missense_Mutation p.R330S 0.23 deleterious(0) benign(0.426) TCGA-22-1016-01 2 89091955 89091955 A T ANKRD36BP2 RNA 0.29 TCGA-22-1016-01 2 89111047 89111047 T A MIR4436A 5'Flank 0.25 TCGA-22-1016-01 2 95480951 95480951 C A ANKRD20A8P RNA 0.22 TCGA-22-1016-01 2 96040934 96040934 G T KCNIP3 Missense_Mutation p.G142V 0.19 tolerated(0.11) benign(0.147) TCGA-22-1016-01 3 108072579 108072579 G T HHLA2 Nonsense_Mutation p.G124* 0.09 TCGA-22-1016-01 3 108072580 108072580 G T HHLA2 Missense_Mutation p.G124V 0.09 deleterious(0.01) benign(0.237) TCGA-22-1016-01 3 108074178 108074178 T A HHLA2 Missense_Mutation p.I212N 0.16 deleterious(0) probably_damaging(0.998) TCGA-22-1016-01 3 111632592 111632592 G T PHLDB2 Intron 0.22 TCGA-22-1016-01 3 121217424 121217424 C T POLQ Missense_Mutation p.E685K 0.20 deleterious(0) probably_damaging(0.999) TCGA-22-1016-01 3 121350949 121350949 T A HCLS1 Silent p.G441G 0.15 TCGA-22-1016-01 3 122247311 122247311 G A PARP9 Missense_Mutation p.T822I 0.18 tolerated(0.22) benign(0.013) TCGA-22-1016-01 3 123634001 123634001 T A CCDC14 Silent p.V788V 0.22 TCGA-22-1016-01 3 125872101 125872101 G T ALDH1L1 Intron 0.29 TCGA-22-1016-01 3 125874343 125874343 G T ALDH1L1 Missense_Mutation p.Q188K 0.20 deleterious_low_confidence(0.02) benign(0.133) TCGA-22-1016-01 3 129389565 129389565 G A TMCC1 Silent p.A373A 0.16 TCGA-22-1016-01 3 130311431 130311431 G A COL6A6 Missense_Mutation p.G1440E 0.16 deleterious(0) probably_damaging(0.996) TCGA-22-1016-01 3 133661470 133661470 G T SLCO2A1 Missense_Mutation p.P535H 0.09 deleterious(0) probably_damaging(1) TCGA-22-1016-01 3 137717748 137717748 T G CLDN18 Missense_Mutation p.V13G 0.25 deleterious(0) benign(0.283) TCGA-22-1016-01 3 148601448 148601448 C A CPA3 Missense_Mutation p.A276E 0.18 tolerated(0.22) benign(0.077) TCGA-22-1016-01 3 154145492 154145492 G T GPR149 Missense_Mutation p.H329Q 0.07 tolerated(1) benign(0.214) TCGA-22-1016-01 3 164908235 164908235 C A SLITRK3 Missense_Mutation p.K128N 0.20 deleterious(0) probably_damaging(0.962) TCGA-22-1016-01 3 165491250 165491250 G A BCHE Missense_Mutation p.R577C 0.11 deleterious(0) probably_damaging(0.956) TCGA-22-1016-01 3 182947497 182947497 A C MCF2L2 Missense_Mutation p.F668V 0.06 tolerated(1) benign(0.012) TCGA-22-1016-01 3 193232568 193232568 G C ATP13A4 Nonsense_Mutation p.Y51* 0.42 TCGA-22-1016-01 3 194118758 194118758 T A GP5 Missense_Mutation p.H85L 0.11 deleterious(0.02) benign(0.04) TCGA-22-1016-01 3 196387449 196387449 A G NRROS Missense_Mutation p.N312S 0.13 tolerated(0.13) benign(0.295) TCGA-22-1016-01 3 196387891 196387891 G T NRROS Missense_Mutation p.R459S 0.13 tolerated(0.09) benign(0.104) TCGA-22-1016-01 3 19975021 19975022 CG A EFHB Frame_Shift_Del p.V164Lfs*16 0.18 TCGA-22-1016-01 3 38674754 38674754 C G SCN5A Missense_Mutation p.R15S 0.23 tolerated(0.12) probably_damaging(0.996) TCGA-22-1016-01 3 38835283 38835283 T C SCN10A Silent p.E73E 0.36 TCGA-22-1016-01 3 39153986 39153986 A T TTC21A Missense_Mutation p.D158V 0.28 deleterious(0.03) possibly_damaging(0.544) TCGA-22-1016-01 3 47037075 47037075 C T NBEAL2 Missense_Mutation p.A617V 0.33 tolerated(0.3) benign(0.005) TCGA-22-1016-01 3 58090918 58090918 C A FLNB Silent p.S574S 0.06 TCGA-22-1016-01 3 68587941 68587941 G T FAM19A1 Missense_Mutation p.M98I 0.22 deleterious(0) probably_damaging(0.954) TCGA-22-1016-01 3 69072406 69072406 T C TMF1 Silent p.E1068E 0.17 TCGA-22-1016-01 3 97983348 97983348 C T OR5H6 Missense_Mutation p.P74S 0.16 deleterious(0.01) possibly_damaging(0.75) TCGA-22-1016-01 4 107156479 107156479 C G TBCK Missense_Mutation p.D466H 0.24 deleterious(0) probably_damaging(0.997) TCGA-22-1016-01 4 114199653 114199653 A G ANK2 Missense_Mutation p.D607G 0.21 probably_damaging(1) TCGA-22-1016-01 4 114239775 114239775 G T ANK2 Missense_Mutation p.G967C 0.38 probably_damaging(0.999) TCGA-22-1016-01 4 146479017 146479017 C T SMAD1 Silent p.P443P 0.32 TCGA-22-1016-01 4 151153969 151153969 G T DCLK2 Nonsense_Mutation p.E536* 0.29 TCGA-22-1016-01 4 169108623 169108623 T A ANXA10 3'UTR 0.42 TCGA-22-1016-01 4 186379985 186379985 C A CCDC110 Nonsense_Mutation p.E586* 0.47 TCGA-22-1016-01 4 1920071 1920071 A T WHSC1 Silent p.S377S 0.23 TCGA-22-1016-01 4 2130962 2130962 G T POLN Missense_Mutation p.T604K 0.15 deleterious(0.04) benign(0.325) TCGA-22-1016-01 4 23803878 23803878 C G PPARGC1A Missense_Mutation p.E704Q 0.11 deleterious(0.04) unknown(0) TCGA-22-1016-01 4 36179599 36179599 T C ARAP2 Silent p.L569L 0.27 TCGA-22-1016-01 4 39219646 39219646 G C WDR19 Missense_Mutation p.R467P 0.13 deleterious(0.01) possibly_damaging(0.736) TCGA-22-1016-01 4 48147470 48147470 C A TEC Missense_Mutation p.G403V 0.22 deleterious(0) probably_damaging(1) TCGA-22-1016-01 4 5141673 5141673 G C STK32B Missense_Mutation p.G32R 0.20 deleterious(0) probably_damaging(0.975) TCGA-22-1016-01 4 5141674 5141674 G T STK32B Missense_Mutation p.G32V 0.19 deleterious(0) probably_damaging(0.967) TCGA-22-1016-01 4 5620295 5620295 C A EVC2 Silent p.R872R 0.29 TCGA-22-1016-01 4 6925386 6925386 G T TBC1D14 Missense_Mutation p.Q90H 0.27 tolerated_low_confidence(0.41) benign(0.229) TCGA-22-1016-01 4 69337231 69337231 C G TMPRSS11E Missense_Mutation p.S127C 0.11 deleterious(0) probably_damaging(0.977) TCGA-22-1016-01 4 69513034 69513034 C A UGT2B15 Missense_Mutation p.A461S 0.27 deleterious(0.02) probably_damaging(0.973) TCGA-22-1016-01 4 69681721 69681721 T A UGT2B10 5'UTR 0.27 TCGA-22-1016-01 4 71508515 71508517 TGG CCGA ENAM Frame_Shift_Ins p.W458Pfs*8 0.24 TCGA-22-1016-01 4 71509842 71509842 C G ENAM Missense_Mutation p.P900R 0.27 deleterious(0.01) probably_damaging(0.962) TCGA-22-1016-01 4 73179413 73179413 G C ADAMTS3 Missense_Mutation p.R576G 0.10 deleterious(0) probably_damaging(1) TCGA-22-1016-01 4 853487 853487 G A GAK Nonsense_Mutation p.Q1064* 0.15 TCGA-22-1016-01 4 88356355 88356355 G T NUDT9 Missense_Mutation p.W110C 0.34 deleterious(0) probably_damaging(1) TCGA-22-1016-01 4 88732843 88732843 A C IBSP Missense_Mutation p.R245S 0.27 tolerated(0.31) benign(0.113) TCGA-22-1016-01 5 101572647 101572647 G T SLCO4C1 Missense_Mutation p.T697K 0.30 tolerated(0.27) benign(0.004) TCGA-22-1016-01 5 128301899 128301899 G C SLC27A6 Silent p.L23L 0.29 TCGA-22-1016-01 5 133295551 133295551 T A C5orf15 Silent p.A100A 0.40 TCGA-22-1016-01 5 13885213 13885213 G A DNAH5 Silent p.R956R 0.17 TCGA-22-1016-01 5 140222998 140222998 G C PCDHA8 Missense_Mutation p.V698L 0.29 tolerated_low_confidence(0.14) benign(0.235) TCGA-22-1016-01 5 140529776 140529776 G C PCDHB6 5'Flank 0.34 TCGA-22-1016-01 5 140537733 140537733 A T PCDHB17 3'UTR 0.27 TCGA-22-1016-01 5 140573390 140573390 C T PCDHB10 Missense_Mutation p.T422I 0.33 deleterious_low_confidence(0.01) benign(0.3) TCGA-22-1016-01 5 140711597 140711597 C - PCDHGA1 Frame_Shift_Del p.P450Qfs*25 0.25 TCGA-22-1016-01 5 140736415 140736415 C A PCDHGA4 Missense_Mutation p.L550I 0.30 tolerated_low_confidence(0.25) benign(0.162) TCGA-22-1016-01 5 140797688 140797688 G A PCDHGB7 Missense_Mutation p.D88N 0.26 tolerated(0.13) benign(0.168) TCGA-22-1016-01 5 143301 143301 C T PLEKHG4B Silent p.P183P 0.21 TCGA-22-1016-01 5 148627364 148627364 G T ABLIM3 Missense_Mutation p.R524L 0.22 deleterious(0.01) probably_damaging(0.937) TCGA-22-1016-01 5 153190660 153190660 G T GRIA1 Nonsense_Mutation p.G876* 0.42 TCGA-22-1016-01 5 156593221 156593221 G T FAM71B 5'UTR 0.30 TCGA-22-1016-01 5 161524751 161524751 C A GABRG2 Silent p.I145I 0.04 TCGA-22-1016-01 5 167655043 167655043 C A TENM2 Missense_Mutation p.L1810M 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-22-1016-01 5 169494609 169494609 C A DOCK2 Silent p.T1521T 0.21 TCGA-22-1016-01 5 169533463 169533463 C T FOXI1 Nonsense_Mutation p.Q168* 0.19 TCGA-22-1016-01 5 170610348 170610348 G A RANBP17 Missense_Mutation p.G651D 0.31 tolerated(0.07) probably_damaging(0.999) TCGA-22-1016-01 5 32074332 32074332 C A PDZD2 Missense_Mutation p.D1040E 0.17 tolerated(0.75) benign(0.293) TCGA-22-1016-01 5 41058234 41058234 G T MROH2B Nonsense_Mutation p.Y229* 0.48 TCGA-22-1016-01 5 79054627 79054627 C A CMYA5 Missense_Mutation p.T3721K 0.27 probably_damaging(0.999) TCGA-22-1016-01 5 79854552 79854552 C A ANKRD34B Missense_Mutation p.R429S 0.34 deleterious(0) possibly_damaging(0.878) TCGA-22-1016-01 5 9630156 9630156 A G TAS2R1 5'UTR 0.32 TCGA-22-1016-01 6 116600879 116600879 G T TSPYL1 Missense_Mutation p.Q39K 0.13 tolerated(0.18) benign(0.001) TCGA-22-1016-01 6 117241515 117241515 A T RFX6 Missense_Mutation p.M409L 0.22 tolerated(0.08) possibly_damaging(0.882) TCGA-22-1016-01 6 132204869 132204869 G T ENPP1 Missense_Mutation p.A756S 0.17 tolerated(0.15) benign(0.17) TCGA-22-1016-01 6 135363228 135363228 G A HBS1L Missense_Mutation p.S49F 0.26 deleterious(0.01) benign(0.001) TCGA-22-1016-01 6 152638029 152638029 T C SYNE1 Silent p.A5555A 0.24 TCGA-22-1016-01 6 152734582 152734582 A - SYNE1 Frame_Shift_Del p.I2045Mfs*6 0.15 TCGA-22-1016-01 6 160328057 160328057 T A MAS1 Missense_Mutation p.S24T 0.15 tolerated(0.24) benign(0.031) TCGA-22-1016-01 6 161966407 161966407 G T PARK2 Intron 0.12 TCGA-22-1016-01 6 167571221 167571221 C A GPR31 Silent p.A33A 0.13 TCGA-22-1016-01 6 168430290 168430290 C T KIF25 Nonsense_Mutation p.Q9* 0.10 TCGA-22-1016-01 6 169648707 169648707 G A THBS2 Silent p.S138S 0.22 TCGA-22-1016-01 6 27861637 27861637 A G HIST1H2BO 3'UTR 0.07 TCGA-22-1016-01 6 29342388 29342388 T C OR12D3 Missense_Mutation p.K226R 0.29 tolerated(0.28) benign(0.246) TCGA-22-1016-01 6 34101084 34101084 C T GRM4 Missense_Mutation p.G64S 0.08 tolerated(0.06) probably_damaging(0.999) TCGA-22-1016-01 6 34957033 34957033 G T ANKS1A Silent p.P414P 0.22 TCGA-22-1016-01 6 39847238 39847238 G T DAAM2 Missense_Mutation p.W610C 0.14 deleterious(0) probably_damaging(0.998) TCGA-22-1016-01 6 42641542 42641542 G T UBR2 Missense_Mutation p.R1367M 0.16 deleterious(0.01) benign(0.345) TCGA-22-1016-01 6 80837262 80837262 A T BCKDHB Splice_Site p.X66_splice 0.13 TCGA-22-1016-01 6 97053784 97053784 G T FHL5 Missense_Mutation p.R114L 0.16 deleterious(0.02) probably_damaging(1) TCGA-22-1016-01 6 97561755 97561755 C A KLHL32 Missense_Mutation p.H242N 0.14 tolerated(0.31) probably_damaging(0.996) TCGA-22-1016-01 7 117864766 117864766 C T ANKRD7 5'UTR 0.54 TCGA-22-1016-01 7 119915061 119915061 C A KCND2 Silent p.I125I 0.30 TCGA-22-1016-01 7 119915062 119915062 C A KCND2 Missense_Mutation p.P126T 0.29 deleterious(0.03) possibly_damaging(0.795) TCGA-22-1016-01 7 129760629 129760629 G T KLHDC10 Silent p.T172T 0.36 TCGA-22-1016-01 7 149422441 149422441 G A KRBA1 Missense_Mutation p.E388K 0.41 deleterious(0) probably_damaging(0.953) TCGA-22-1016-01 7 149497030 149497030 C A SSPO RNA 0.36 TCGA-22-1016-01 7 150171294 150171294 T C GIMAP8 Missense_Mutation p.W293R 0.31 deleterious(0) probably_damaging(0.999) TCGA-22-1016-01 7 150217926 150217926 G C GIMAP7 Missense_Mutation p.W288C 0.24 deleterious(0.02) benign(0.071) TCGA-22-1016-01 7 157926630 157926645 TCAGGGTGCTCGGACT - PTPRN2 Frame_Shift_Del p.K427Sfs*84 0.24 TCGA-22-1016-01 7 158438254 158438254 C A NCAPG2 Silent p.V1079V 0.28 TCGA-22-1016-01 7 20782677 20782677 G T ABCB5 Missense_Mutation p.D1068Y 0.33 deleterious(0) probably_damaging(0.997) TCGA-22-1016-01 7 50680468 50680468 C A GRB10 Silent p.T388T 0.48 TCGA-22-1016-01 7 64467048 64467048 C A ERV3-1 5'Flank 0.32 TCGA-22-1016-01 7 76134751 76134751 A G DTX2 Missense_Mutation p.S568G 0.21 deleterious(0.02) benign(0.217) TCGA-22-1016-01 7 88963897 88963897 C A ZNF804B Missense_Mutation p.P534Q 0.35 deleterious(0.02) benign(0.003) TCGA-22-1016-01 7 99796200 99796200 C T STAG3 Silent p.Y449Y 0.40 TCGA-22-1016-01 8 110451248 110451248 C A PKHD1L1 Missense_Mutation p.L1295I 0.46 tolerated(0.13) benign(0.006) TCGA-22-1016-01 8 113293416 113293416 T A CSMD3 Missense_Mutation p.L3165F 0.20 tolerated(0.06) possibly_damaging(0.56) TCGA-22-1016-01 8 116426604 116426604 C G TRPS1 Missense_Mutation p.D1178H 0.50 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-22-1016-01 8 118175695 118175695 C A SLC30A8 Missense_Mutation p.T252K 0.38 deleterious(0) probably_damaging(0.987) TCGA-22-1016-01 8 11831460 11831460 G T DEFB136 Missense_Mutation p.P75T 0.19 tolerated_low_confidence(0.24) probably_damaging(0.958) TCGA-22-1016-01 8 141449292 141449292 A G TRAPPC9 Missense_Mutation p.Y295H 0.19 tolerated(0.5) probably_damaging(0.992) TCGA-22-1016-01 8 143958177 143958177 C A CYP11B1 Missense_Mutation p.M240I 0.14 tolerated(0.19) benign(0.012) TCGA-22-1016-01 8 2026941 2026941 G T MYOM2 Silent p.A463A 0.17 TCGA-22-1016-01 8 3565943 3565943 G T CSMD1 Missense_Mutation p.N334K 0.24 benign(0.303) TCGA-22-1016-01 8 41530291 41530291 G C ANK1 Silent p.T1600T 0.23 TCGA-22-1016-01 8 42608376 42608376 A G CHRNA6 Silent p.F477F 0.03 TCGA-22-1016-01 8 61765996 61765996 G T CHD7 Nonsense_Mutation p.E2238* 0.56 TCGA-22-1016-01 8 67971496 67971496 G C COPS5 Missense_Mutation p.Q110E 0.04 deleterious(0.01) possibly_damaging(0.855) TCGA-22-1016-01 8 88885963 88885963 C A DCAF4L2 Silent p.A79A 0.24 TCGA-22-1016-01 9 107379751 107379751 C A OR13C9 Silent p.L245L 0.37 TCGA-22-1016-01 9 112898997 112898997 G A PALM2-AKAP2 Silent p.R391R 0.21 TCGA-22-1016-01 9 135277305 135277305 C G TTF1 Missense_Mutation p.E302Q 0.04 tolerated_low_confidence(0.43) benign(0.012) TCGA-22-1016-01 9 136029595 136029595 C A GBGT1 Missense_Mutation p.R138L 0.37 tolerated(0.47) benign(0.077) TCGA-22-1016-01 9 139412363 139412363 T A NOTCH1 Nonsense_Mutation p.K428* 0.31 TCGA-22-1016-01 9 139916869 139916869 C A ABCA2 Silent p.T167T 0.32 TCGA-22-1016-01 9 17761492 17761492 C A SH3GL2 Missense_Mutation p.L58I 0.21 deleterious(0.03) probably_damaging(0.999) TCGA-22-1016-01 9 21333639 21333639 C A KLHL9 Missense_Mutation p.R407L 0.16 deleterious(0.01) probably_damaging(0.958) TCGA-22-1016-01 9 6849619 6849619 G - KDM4C Frame_Shift_Del p.W183* 0.20 TCGA-22-1016-01 9 80038770 80038770 G T GNA14 3'UTR 0.30 TCGA-22-1016-01 9 86585085 86585085 C G HNRNPK Silent p.L451L 0.34 TCGA-22-1016-01 9 99114388 99114388 T A SLC35D2 Silent p.L117L 0.24 TCGA-22-1016-01 X 104464163 104464163 G C TEX13A Missense_Mutation p.T238R 0.47 tolerated(0.14) benign(0.041) TCGA-22-1016-01 X 110497519 110497519 T C CAPN6 Missense_Mutation p.Q93R 0.38 tolerated(1) benign(0.006) TCGA-22-1016-01 X 114541191 114541191 C A LUZP4 Missense_Mutation p.T255N 0.06 tolerated(0.66) probably_damaging(0.991) TCGA-22-1016-01 X 118151659 118151659 G T LONRF3 3'UTR 0.39 TCGA-22-1016-01 X 118151664 118151664 G T LONRF3 3'UTR 0.38 TCGA-22-1016-01 X 119077307 119077307 G A NKAP Missense_Mutation p.R88W 0.43 tolerated(0.17) benign(0.046) TCGA-22-1016-01 X 123504098 123504098 C A SH2D1A Missense_Mutation p.Q92K 0.45 deleterious(0) probably_damaging(0.982) TCGA-22-1016-01 X 142967583 142967583 G A UBE2NL Silent p.V127V 0.35 TCGA-22-1016-01 X 155127868 155127868 A G VAMP7 Silent p.P99P 0.28 TCGA-22-1016-01 X 15591560 15591560 C A ACE2 Missense_Mutation p.V491L 0.44 tolerated(0.27) benign(0.008) TCGA-22-1016-01 X 21508631 21508631 C G CNKSR2 Missense_Mutation p.L206V 0.15 tolerated(0.1) benign(0.326) TCGA-22-1016-01 X 27997796 27997796 C A DCAF8L1 Silent p.V552V 0.40 TCGA-22-1016-01 X 49065032 49065032 C T CACNA1F Missense_Mutation p.R1700K 0.50 tolerated(0.99) benign(0.002) TCGA-22-1016-01 X 53563496 53563496 G A HUWE1 Silent p.T4090T 0.48 TCGA-22-1016-01 X 54836517 54836517 A C MAGED2 Silent p.T136T 0.45 TCGA-22-1016-01 X 69646855 69646855 C A GDPD2 Silent p.A232A 0.51 TCGA-22-1016-01 X 72433581 72433581 T A NAP1L2 Missense_Mutation p.N250Y 0.13 deleterious(0) probably_damaging(0.964) TCGA-22-1016-01 X 86869436 86869436 G T KLHL4 Splice_Site p.X197_splice 0.39 TCGA-22-1016-01 X 89177593 89177593 A G TGIF2LX Missense_Mutation p.E170G 0.30 tolerated(0.1) benign(0.305) TCGA-22-1016-01 X 89177791 89177791 A C TGIF2LX Missense_Mutation p.K236T 0.32 deleterious(0.01) benign(0.041) TCGA-22-4591-01 10 100143526 100143526 C T PYROXD2 3'UTR 0.49 TCGA-22-4591-01 10 102893992 102893992 G T TLX1 Missense_Mutation p.R210L 0.46 deleterious(0.03) probably_damaging(0.916) TCGA-22-4591-01 10 113924309 113924309 C T GPAM Silent p.A427A 0.30 TCGA-22-4591-01 10 116606016 116606016 A G FAM160B1 Missense_Mutation p.M430V 0.42 tolerated(0.19) benign(0.002) TCGA-22-4591-01 10 135025267 135025267 G T KNDC1 Missense_Mutation p.G1381C 0.34 tolerated(0.33) benign(0.048) TCGA-22-4591-01 10 31139078 31139078 C A ZNF438 Missense_Mutation p.A86S 0.37 deleterious(0.04) benign(0.189) TCGA-22-4591-01 10 48429112 48429112 G T GDF10 Missense_Mutation p.S258R 0.90 deleterious(0) probably_damaging(0.999) TCGA-22-4591-01 10 50902689 50902689 G T C10orf53 Intron 0.73 TCGA-22-4591-01 10 52103273 52103273 T A SGMS1 Missense_Mutation p.Q201L 0.58 tolerated(0.31) possibly_damaging(0.824) TCGA-22-4591-01 10 61832077 61832077 T C ANK3 Silent p.T2854T 0.40 TCGA-22-4591-01 10 73558235 73558235 G A CDH23 Silent p.V78V 0.53 TCGA-22-4591-01 10 83635374 83635374 C A NRG3 Missense_Mutation p.S93Y 0.27 deleterious(0) probably_damaging(0.994) TCGA-22-4591-01 10 88260207 88260207 C G WAPAL Missense_Mutation p.D265H 0.50 tolerated_low_confidence(0.12) benign(0.132) TCGA-22-4591-01 11 10014013 10014013 A G SBF2 Silent p.G415G 0.21 TCGA-22-4591-01 11 111915876 111915876 T A DLAT Silent p.V404V 0.66 TCGA-22-4591-01 11 112042610 112042610 A G TEX12 Missense_Mutation p.T115A 0.52 tolerated(0.5) benign(0.005) TCGA-22-4591-01 11 1272392 1272392 C T MUC5B Missense_Mutation p.T4761M 0.60 unknown(0) TCGA-22-4591-01 11 128807525 128807525 G T TP53AIP1 Intron 0.14 TCGA-22-4591-01 11 1466647 1466647 C T BRSK2 Silent p.F358F 0.16 TCGA-22-4591-01 11 212652 212652 A T RIC8A Missense_Mutation p.E374V 0.18 deleterious(0) probably_damaging(0.992) TCGA-22-4591-01 11 40136214 40136214 C T LRRC4C Missense_Mutation p.M543I 0.26 tolerated(0.09) benign(0.096) TCGA-22-4591-01 11 4406512 4406512 C A TRIM21 3'UTR 0.14 TCGA-22-4591-01 11 4608932 4608932 A G OR52I2 Missense_Mutation p.D297G 0.14 tolerated(0.24) benign(0.02) TCGA-22-4591-01 11 4929356 4929356 C - OR51A7 Frame_Shift_Del p.I254Sfs*19 0.13 TCGA-22-4591-01 11 5530822 5530822 C A UBQLN3 Intron 0.24 TCGA-22-4591-01 11 55579641 55579641 C A OR5L1 Silent p.G233G 0.16 TCGA-22-4591-01 11 55653288 55653288 C A TRIM51 Silent p.P128P 0.65 TCGA-22-4591-01 11 58170531 58170531 A T OR5B3 Missense_Mutation p.Y118N 0.67 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-22-4591-01 11 58190570 58190570 G T OR5B2 Silent p.T55T 0.16 TCGA-22-4591-01 11 5905563 5905563 T C OR52E4 Missense_Mutation p.F14S 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-22-4591-01 11 70049646 70049646 C A FADD Nonsense_Mutation p.C27* 0.21 TCGA-22-4591-01 11 76207484 76207484 A C C11orf30 Missense_Mutation p.K445T 0.20 tolerated(0.17) possibly_damaging(0.775) TCGA-22-4591-01 12 104181237 104181237 A G NT5DC3 Silent p.H390H 0.17 TCGA-22-4591-01 12 123889485 123889485 C T SETD8 Missense_Mutation p.R238W 0.21 deleterious(0) probably_damaging(0.998) TCGA-22-4591-01 12 132551417 132551417 C T EP400 Silent p.S2884S 0.27 TCGA-22-4591-01 12 48375868 48375868 C T COL2A1 Intron 0.24 TCGA-22-4591-01 12 53468891 53468891 G C SPRYD3 Missense_Mutation p.A120G 0.22 deleterious(0.03) probably_damaging(0.915) TCGA-22-4591-01 12 57588854 57588854 G T LRP1 Missense_Mutation p.G2760W 0.04 probably_damaging(1) TCGA-22-4591-01 12 59274487 59274487 C A LRIG3 Silent p.V559V 0.82 TCGA-22-4591-01 12 662639 662639 A T B4GALNT3 Missense_Mutation p.K517I 0.18 deleterious(0.04) benign(0.11) TCGA-22-4591-01 12 8212693 8212693 A T C3AR1 Missense_Mutation p.L30H 0.62 deleterious(0) probably_damaging(0.931) TCGA-22-4591-01 12 98849147 98849147 T C SLC9A7P1 RNA 0.78 TCGA-22-4591-01 13 101714326 101714326 G T NALCN Silent p.I1583I 0.79 TCGA-22-4591-01 13 112721993 112721993 G C SOX1 Missense_Mutation p.E7D 0.28 deleterious(0.03) benign(0.438) TCGA-22-4591-01 13 21063632 21063632 C A CRYL1 Missense_Mutation p.K51N 0.07 deleterious_low_confidence(0.04) possibly_damaging(0.837) TCGA-22-4591-01 13 23912373 23912373 C G SACS Missense_Mutation p.G1881A 0.29 probably_damaging(0.998) TCGA-22-4591-01 13 25416262 25416262 C A RNF17 Missense_Mutation p.Q856K 0.11 tolerated(0.17) possibly_damaging(0.678) TCGA-22-4591-01 13 32332513 32332513 T C RXFP2 Silent p.C71C 0.05 TCGA-22-4591-01 13 35864535 35864535 G T NBEA Missense_Mutation p.C1929F 0.39 deleterious(0.05) benign(0.286) TCGA-22-4591-01 13 37625665 37625665 T C SUPT20H 5'UTR 0.75 TCGA-22-4591-01 13 39454823 39454823 G C FREM2 Missense_Mutation p.G3137R 0.90 tolerated_low_confidence(0.67) benign(0) TCGA-22-4591-01 13 46935598 46935598 G T KIAA0226L Missense_Mutation p.S366Y 0.75 deleterious(0.03) probably_damaging(0.91) TCGA-22-4591-01 13 51963577 51963577 C T INTS6 Missense_Mutation p.R206H 0.27 deleterious(0.01) benign(0.015) TCGA-22-4591-01 13 95131312 95131312 G A DCT Silent p.A66A 0.28 TCGA-22-4591-01 13 96675911 96675911 T A UGGT2 Missense_Mutation p.Y115F 0.59 tolerated(0.1) possibly_damaging(0.697) TCGA-22-4591-01 14 100803472 100803472 C T WARS Missense_Mutation p.C394Y 0.21 deleterious(0.02) probably_damaging(0.948) TCGA-22-4591-01 14 106357052 106357052 G C IGHD1-20 Missense_Mutation p.T5R 0.35 probably_damaging(0.995) TCGA-22-4591-01 14 19377713 19377713 C A OR11H12 Silent p.I40I 0.39 TCGA-22-4591-01 14 21991967 21991967 T A SALL2 Missense_Mutation p.Q632L 0.19 deleterious(0) probably_damaging(0.978) TCGA-22-4591-01 14 21992791 21992791 C T SALL2 Silent p.L357L 0.35 TCGA-22-4591-01 14 45667984 45667984 G A FANCM Missense_Mutation p.E1952K 0.26 deleterious(0) probably_damaging(0.999) TCGA-22-4591-01 14 52526917 52526917 T C NID2 Missense_Mutation p.E231G 0.24 deleterious(0.01) probably_damaging(0.981) TCGA-22-4591-01 14 64194007 64194007 A G SGPP1 Missense_Mutation p.M219T 0.47 deleterious(0.02) benign(0.266) TCGA-22-4591-01 14 74711940 74711940 T C VSX2 Silent p.Y176Y 0.47 TCGA-22-4591-01 14 81670326 81670326 G A GTF2A1 Silent p.H85H 0.14 TCGA-22-4591-01 15 20643926 20643926 G C HERC2P3 RNA 0.09 TCGA-22-4591-01 15 22369213 22369213 C T OR4M2 Missense_Mutation p.A213V 0.05 tolerated(0.79) possibly_damaging(0.447) TCGA-22-4591-01 15 42057172 42057172 A G MGA Silent p.L2611L 0.30 TCGA-22-4591-01 15 48707881 48707881 C A FBN1 Missense_Mutation p.A2635S 0.72 benign(0.008) TCGA-22-4591-01 15 49036454 49036454 G A CEP152 Missense_Mutation p.A1273V 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-22-4591-01 15 51973962 51973962 C T SCG3 Missense_Mutation p.L4F 0.63 tolerated_low_confidence(0.17) benign(0.021) TCGA-22-4591-01 15 60298008 60298008 C A FOXB1 Silent p.T282T 0.72 TCGA-22-4591-01 15 89392689 89392689 C T ACAN Missense_Mutation p.R585C 0.73 deleterious(0) unknown(0) TCGA-22-4591-01 15 99670662 99670662 C T SYNM Silent p.S698S 0.07 TCGA-22-4591-01 16 2258880 2258880 C T MLST8 3'UTR 0.84 TCGA-22-4591-01 16 4924934 4924934 C A UBN1 Silent p.L841L 0.80 TCGA-22-4591-01 16 4926941 4926941 C T UBN1 Missense_Mutation p.P1032S 0.05 tolerated(0.18) benign(0.027) TCGA-22-4591-01 16 49315323 49315323 C A CBLN1 Silent p.P18P 0.25 TCGA-22-4591-01 16 5009369 5009369 G A SEC14L5 Silent p.P15P 0.77 TCGA-22-4591-01 16 50745778 50745778 G A NOD2 Silent p.S652S 0.27 TCGA-22-4591-01 16 84218553 84218553 G A TAF1C Silent p.T14T 0.25 TCGA-22-4591-01 16 86600933 86600933 G T FOXC2 5'UTR 0.78 TCGA-22-4591-01 17 10419544 10419544 T C MYH1 Missense_Mutation p.K107R 0.81 tolerated(0.3) possibly_damaging(0.588) TCGA-22-4591-01 17 17942271 17942271 C T ATPAF2 Silent p.P19P 0.83 TCGA-22-4591-01 17 30310095 30310095 C T SUZ12 Missense_Mutation p.A332V 0.43 deleterious(0.01) probably_damaging(0.998) TCGA-22-4591-01 17 31323996 31323996 A T SPACA3 Missense_Mutation p.N160I 0.40 deleterious(0) probably_damaging(1) TCGA-22-4591-01 17 45291180 45291180 G T MYL4 Missense_Mutation p.D51Y 0.12 deleterious(0) possibly_damaging(0.897) TCGA-22-4591-01 17 45820467 45820467 C G TBX21 Missense_Mutation p.P226R 0.07 deleterious(0) possibly_damaging(0.467) TCGA-22-4591-01 17 48632997 48632997 G A SPATA20 Missense_Mutation p.E795K 0.09 deleterious(0.05) benign(0.116) TCGA-22-4591-01 17 56051910 56051934 GGGGCGGCTAATGTCATAGGTGTGG - VEZF1 Frame_Shift_Del p.P489Lfs*4 0.64 TCGA-22-4591-01 17 56270816 56270816 A G EPX Silent p.T85T 0.71 TCGA-22-4591-01 17 56389406 56389406 T C BZRAP1 Missense_Mutation p.S926G 0.73 tolerated(1) benign(0.004) TCGA-22-4591-01 17 57760366 57760366 C G CLTC Missense_Mutation p.N1288K 0.61 tolerated(1) benign(0.051) TCGA-22-4591-01 17 58040566 58040566 G T RNFT1 Missense_Mutation p.H46N 0.16 tolerated(0.22) benign(0.159) TCGA-22-4591-01 17 58040567 58040567 C T RNFT1 Silent p.L45L 0.16 TCGA-22-4591-01 17 59481839 59481839 A T TBX2 Missense_Mutation p.N290Y 0.16 deleterious(0) probably_damaging(0.96) TCGA-22-4591-01 17 64210707 64210707 A T APOH Silent p.I282I 0.10 TCGA-22-4591-01 17 65346408 65346408 T A PSMD12 Missense_Mutation p.E114D 0.22 tolerated(0.46) benign(0.001) TCGA-22-4591-01 17 67045446 67045446 C A ABCA9 Silent p.V94V 0.19 TCGA-22-4591-01 17 74475254 74475254 C T RHBDF2 Silent p.K155K 0.20 TCGA-22-4591-01 17 7579480 7579480 A G TP53 Silent p.A69A 0.74 TCGA-22-4591-01 17 76046155 76046155 G A TNRC6C Missense_Mutation p.G338S 0.16 tolerated(0.47) benign(0.092) TCGA-22-4591-01 17 7643087 7643087 G T DNAH2 Missense_Mutation p.D403Y 0.71 benign(0.314) TCGA-22-4591-01 17 7697572 7697572 G A DNAH2 Missense_Mutation p.E2524K 0.70 benign(0.063) TCGA-22-4591-01 17 77039918 77039918 C A C1QTNF1 Intron 0.39 TCGA-22-4591-01 17 80274690 80274690 A G CD7 Missense_Mutation p.F84L 0.20 deleterious(0) possibly_damaging(0.896) TCGA-22-4591-01 18 21723346 21723346 A G CABYR Silent p.K56K 0.67 TCGA-22-4591-01 18 22806790 22806790 T A ZNF521 Silent p.S364S 0.10 TCGA-22-4591-01 18 31523135 31523135 G T NOL4 Missense_Mutation p.P479H 0.24 deleterious(0) probably_damaging(0.997) TCGA-22-4591-01 18 31523136 31523136 G T NOL4 Missense_Mutation p.P479T 0.24 deleterious(0.01) probably_damaging(0.973) TCGA-22-4591-01 18 76752543 76752543 C T SALL3 Silent p.G184G 0.67 TCGA-22-4591-01 19 13084213 13084213 G T DAND5 Missense_Mutation p.R112L 0.69 deleterious(0.03) probably_damaging(0.96) TCGA-22-4591-01 19 17476431 17476431 G A PLVAP Silent p.S281S 0.25 TCGA-22-4591-01 19 17476432 17476432 G A PLVAP Missense_Mutation p.S281F 0.24 deleterious(0.01) possibly_damaging(0.571) TCGA-22-4591-01 19 21476337 21476337 C G ZNF708 Missense_Mutation p.K477N 0.09 deleterious(0.01) probably_damaging(0.981) TCGA-22-4591-01 19 22154747 22154747 T A ZNF208 Missense_Mutation p.K1030I 0.12 tolerated(0.08) benign(0.311) TCGA-22-4591-01 19 22256289 22256289 C A ZNF257 Missense_Mutation p.P50Q 0.11 deleterious(0.04) benign(0.08) TCGA-22-4591-01 19 29698409 29698409 G C UQCRFS1 3'UTR 0.29 TCGA-22-4591-01 19 41726703 41726703 A G AXL Missense_Mutation p.Q83R 0.12 tolerated(0.33) probably_damaging(1) TCGA-22-4591-01 19 46313932 46313932 C A RSPH6A Nonsense_Mutation p.E273* 0.28 TCGA-22-4591-01 19 4676589 4676589 T A DPP9 Missense_Mutation p.Q889L 0.84 deleterious(0) probably_damaging(0.999) TCGA-22-4591-01 19 49464238 49464238 C T BAX Silent p.L181L 0.23 TCGA-22-4591-01 19 50548547 50548547 C T ZNF473 Nonsense_Mutation p.Q283* 0.22 TCGA-22-4591-01 19 52272372 52272372 T C FPR2 Missense_Mutation p.L154P 0.15 deleterious(0) probably_damaging(0.981) TCGA-22-4591-01 19 53086017 53086017 A C ZNF701 Silent p.I301I 0.26 TCGA-22-4591-01 19 56614508 56614508 C A ZNF787 Missense_Mutation p.V27L 0.46 tolerated(0.17) possibly_damaging(0.893) TCGA-22-4591-01 19 57654025 57654025 C T ZIM3 5'UTR 0.22 TCGA-22-4591-01 19 58427749 58427749 G - ZNF417 Frame_Shift_Del p.Q11Sfs*5 0.18 TCGA-22-4591-01 19 8670179 8670179 C A ADAMTS10 Silent p.G51G 0.86 TCGA-22-4591-01 19 9578088 9578088 C A ZNF560 Missense_Mutation p.G512V 0.65 deleterious(0) probably_damaging(0.989) TCGA-22-4591-01 1 110257798 110257798 G A GSTM5 Missense_Mutation p.R168H 0.03 deleterious(0.03) benign(0.096) TCGA-22-4591-01 1 14105332 14105332 G C PRDM2 Missense_Mutation p.E348Q 0.05 possibly_damaging(0.899) TCGA-22-4591-01 1 152777557 152777557 T G LCE1C 3'UTR 0.81 TCGA-22-4591-01 1 157062600 157062600 C A ETV3L Silent p.G309G 0.83 TCGA-22-4591-01 1 159683677 159683677 G A CRP Missense_Mutation p.P105S 0.79 tolerated(0.17) benign(0.008) TCGA-22-4591-01 1 169101997 169101997 C T NME7 3'UTR 0.26 TCGA-22-4591-01 1 169698481 169698481 A T SELE Missense_Mutation p.N312K 0.82 tolerated(0.05) probably_damaging(0.93) TCGA-22-4591-01 1 181479612 181479612 C T CACNA1E Splice_Site p.X89_splice 0.78 TCGA-22-4591-01 1 18703338 18703338 G T IGSF21 Silent p.G382G 0.49 TCGA-22-4591-01 1 190234022 190234022 G A BRINP3 Silent p.H197H 0.74 TCGA-22-4591-01 1 197072612 197072612 T C ASPM Silent p.A1923A 0.74 TCGA-22-4591-01 1 197112527 197112527 A T ASPM Missense_Mutation p.N285K 0.15 tolerated(0.09) benign(0.035) TCGA-22-4591-01 1 21804673 21804673 G A NBPF3 Silent p.Q343Q 0.26 TCGA-22-4591-01 1 220777445 220777445 T G MARK1 Missense_Mutation p.M154R 0.83 deleterious(0.01) probably_damaging(1) TCGA-22-4591-01 1 233508041 233508041 A G MLK4 Intron 0.38 TCGA-22-4591-01 1 236992548 236992548 A T MTR Missense_Mutation p.E352V 0.78 deleterious(0.02) benign(0.004) TCGA-22-4591-01 1 237774248 237774248 C A RYR2 Missense_Mutation p.P1624T 0.80 probably_damaging(0.987) TCGA-22-4591-01 1 237774249 237774249 C A RYR2 Missense_Mutation p.P1624H 0.80 probably_damaging(0.99) TCGA-22-4591-01 1 248262792 248262792 G A OR2L13 Missense_Mutation p.V39M 0.80 tolerated(0.21) benign(0.013) TCGA-22-4591-01 1 34049276 34049276 G C CSMD2 Missense_Mutation p.S2404R 0.53 deleterious(0.01) probably_damaging(0.981) TCGA-22-4591-01 1 40563015 40563015 G T PPT1 5'UTR 0.17 TCGA-22-4591-01 1 41283880 41283880 G A KCNQ4 Silent p.R150R 0.22 TCGA-22-4591-01 1 45271337 45271337 G A PLK3 Missense_Mutation p.R643H 0.03 tolerated(0.2) unknown(0) TCGA-22-4591-01 1 5940192 5940192 T A NPHP4 Missense_Mutation p.T865S 0.58 tolerated(1) benign(0.006) TCGA-22-4591-01 1 62734103 62734103 T A KANK4 Missense_Mutation p.E696V 0.31 tolerated(0.06) possibly_damaging(0.788) TCGA-22-4591-01 1 75072462 75072462 C A C1orf173 Missense_Mutation p.V438L 0.39 tolerated(1) benign(0.001) TCGA-22-4591-01 1 90493297 90493297 C T ZNF326 3'UTR 0.30 TCGA-22-4591-01 20 30064411 30064411 C T REM1 Missense_Mutation p.P55S 0.24 tolerated(0.47) benign(0.029) TCGA-22-4591-01 20 33370010 33370010 A G NCOA6 Missense_Mutation p.V50A 0.64 benign(0.257) TCGA-22-4591-01 20 3543854 3543854 A G ATRN Splice_Site p.X544_splice 0.21 TCGA-22-4591-01 20 36845813 36845813 C G KIAA1755 Missense_Mutation p.G915R 0.33 tolerated_low_confidence(0.1) benign(0.055) TCGA-22-4591-01 20 50407509 50407509 C T SALL4 Missense_Mutation p.G505S 0.12 tolerated(0.68) benign(0.002) TCGA-22-4591-01 20 54578952 54578952 G A CBLN4 Silent p.I92I 0.14 TCGA-22-4591-01 20 55027547 55027547 G A CASS4 Missense_Mutation p.V439M 0.28 tolerated(0.12) benign(0.091) TCGA-22-4591-01 20 55033790 55033790 G C CASS4 Missense_Mutation p.G783A 0.26 tolerated(0.94) benign(0.029) TCGA-22-4591-01 20 62591049 62591049 T C ZNF512B 3'UTR 0.16 TCGA-22-4591-01 21 30403061 30403061 T C USP16 Silent p.P69P 0.79 TCGA-22-4591-01 21 47986572 47986572 G A DIP2A Missense_Mutation p.R1480Q 0.39 deleterious(0) probably_damaging(0.968) TCGA-22-4591-01 22 19864577 19864577 C T TXNRD2 3'UTR 0.44 TCGA-22-4591-01 22 37769395 37769395 C T ELFN2 Missense_Mutation p.R727H 0.13 deleterious(0) probably_damaging(0.932) TCGA-22-4591-01 22 37770239 37770239 C T ELFN2 Missense_Mutation p.D446N 0.15 deleterious(0) benign(0.199) TCGA-22-4591-01 22 46611134 46611134 C T PPARA Silent p.D91D 0.11 TCGA-22-4591-01 2 100906865 100906865 C T LONRF2 Missense_Mutation p.C592Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-22-4591-01 2 116525900 116525900 G A DPP10 Missense_Mutation p.G385S 0.30 tolerated(0.06) benign(0.01) TCGA-22-4591-01 2 153573931 153573931 C A PRPF40A Missense_Mutation p.R8L 0.38 tolerated_low_confidence(0.4) benign(0.25) TCGA-22-4591-01 2 158443728 158443728 C T ACVR1C Missense_Mutation p.C92Y 0.16 deleterious(0) probably_damaging(0.913) TCGA-22-4591-01 2 166892736 166892736 C G SCN1A Missense_Mutation p.S1084T 0.55 tolerated(0.31) benign(0.05) TCGA-22-4591-01 2 166900488 166900488 T A SCN1A Missense_Mutation p.R578S 0.25 deleterious(0.01) possibly_damaging(0.769) TCGA-22-4591-01 2 170022562 170022562 C G LRP2 Missense_Mutation p.D3880H 0.32 benign(0.299) TCGA-22-4591-01 2 191899283 191899283 C G STAT4 Missense_Mutation p.K537N 0.07 deleterious(0) possibly_damaging(0.495) TCGA-22-4591-01 2 197878319 197878319 C T HNRNPA3P15 5'Flank 0.06 TCGA-22-4591-01 2 202598015 202598015 G A ALS2 Missense_Mutation p.A855V 0.23 deleterious(0.02) benign(0.158) TCGA-22-4591-01 2 207572142 207572142 C G DYTN Missense_Mutation p.Q60H 0.24 tolerated(0.07) benign(0.109) TCGA-22-4591-01 2 211476995 211476995 C A CPS1 Missense_Mutation p.T855K 0.11 tolerated(1) benign(0.171) TCGA-22-4591-01 2 234652362 234652362 G A UGT1A10 Intron 0.25 TCGA-22-4591-01 2 239975206 239975206 C T HDAC4 Silent p.T1055T 0.26 TCGA-22-4591-01 2 32339808 32339808 G A SPAST Missense_Mutation p.G262S 0.47 tolerated(0.36) benign(0.098) TCGA-22-4591-01 2 72359597 72359597 G A CYP26B1 Missense_Mutation p.P433L 0.46 deleterious(0) probably_damaging(1) TCGA-22-4591-01 2 89246933 89246933 C A IGKV1-5 Silent p.G79G 0.41 TCGA-22-4591-01 2 99013414 99013414 C A CNGA3 Missense_Mutation p.A594D 0.50 deleterious(0) probably_damaging(0.987) TCGA-22-4591-01 3 100354555 100354555 C T GPR128 Missense_Mutation p.S161F 0.47 deleterious(0) probably_damaging(0.936) TCGA-22-4591-01 3 100962542 100962542 A T IMPG2 Missense_Mutation p.V878D 0.50 deleterious(0) benign(0.011) TCGA-22-4591-01 3 108723688 108723688 A G MORC1 Silent p.T687T 0.30 TCGA-22-4591-01 3 122942416 122942416 T C SEC22A Missense_Mutation p.S65P 0.26 deleterious(0.01) probably_damaging(0.972) TCGA-22-4591-01 3 137483637 137483637 C A SOX14 Missense_Mutation p.P4H 0.12 deleterious(0) probably_damaging(0.96) TCGA-22-4591-01 3 151598819 151598819 C T SUCNR1 Missense_Mutation p.P163L 0.30 tolerated(0.05) possibly_damaging(0.507) TCGA-22-4591-01 3 185337233 185337233 C G SENP2 Silent p.L463L 0.60 TCGA-22-4591-01 3 187449662 187449662 T C BCL6 Missense_Mutation p.N73S 0.12 tolerated(1) benign(0.092) TCGA-22-4591-01 3 47045732 47045732 A G NBEAL2 Missense_Mutation p.Q2016R 0.64 tolerated(0.29) benign(0.028) TCGA-22-4591-01 3 49720046 49720046 C T APEH Missense_Mutation p.S587F 0.36 deleterious(0) probably_damaging(0.995) TCGA-22-4591-01 3 50679721 50679721 C T MAPKAPK3 Silent p.I154I 0.78 TCGA-22-4591-01 3 77607299 77607299 G A ROBO2 Missense_Mutation p.R495Q 0.36 tolerated(0.73) possibly_damaging(0.553) TCGA-22-4591-01 3 89521680 89521680 G A EPHA3 Nonsense_Mutation p.W919* 0.76 TCGA-22-4591-01 3 97251353 97251353 A G EPHA6 Silent p.P784P 0.23 TCGA-22-4591-01 4 105412321 105412321 G A CXXC4 Silent p.C213C 0.04 TCGA-22-4591-01 4 111542336 111542336 G A PITX2 Missense_Mutation p.T132M 0.21 deleterious(0) probably_damaging(0.999) TCGA-22-4591-01 4 114294293 114294293 A C ANK2 Missense_Mutation p.E3886D 0.23 benign(0.423) TCGA-22-4591-01 4 125599886 125599886 T C ANKRD50 Silent p.L229L 0.27 TCGA-22-4591-01 4 146067571 146067571 G C OTUD4 Missense_Mutation p.R359G 0.54 deleterious(0) benign(0.016) TCGA-22-4591-01 4 164393664 164393664 G T TKTL2 Missense_Mutation p.A408D 0.53 deleterious(0) probably_damaging(0.989) TCGA-22-4591-01 4 169341462 169341462 G A DDX60L Silent p.L822L 0.25 TCGA-22-4591-01 4 183245202 183245202 G T TENM3 Missense_Mutation p.C10F 0.38 deleterious_low_confidence(0.04) possibly_damaging(0.639) TCGA-22-4591-01 4 44680639 44680639 C T GUF1 5'UTR 0.29 TCGA-22-4591-01 4 53237 53237 G T ZNF595 5'UTR 0.09 TCGA-22-4591-01 4 69179845 69179845 C T YTHDC1 Missense_Mutation p.R719Q 0.12 tolerated_low_confidence(0.32) unknown(0) TCGA-22-4591-01 4 85717868 85717868 A C WDFY3 Missense_Mutation p.D991E 0.25 tolerated_low_confidence(0.06) benign(0.011) TCGA-22-4591-01 4 898519 898519 G A GAK Missense_Mutation p.S144L 0.71 deleterious(0.01) possibly_damaging(0.566) TCGA-22-4591-01 5 124036808 124036822 GTATTGACACCCACA - ZNF608 In_Frame_Del p.V350_T354del 0.27 TCGA-22-4591-01 5 13719115 13719115 C T DNAH5 Silent p.A4125A 0.06 TCGA-22-4591-01 5 140537480 140537480 C T PCDHB17 3'UTR 0.25 TCGA-22-4591-01 5 150924660 150924660 C T FAT2 Missense_Mutation p.D2010N 0.32 benign(0.304) TCGA-22-4591-01 5 150948429 150948429 G A FAT2 Silent p.L22L 0.70 TCGA-22-4591-01 5 158588402 158588402 G C RNF145 Missense_Mutation p.L530V 0.36 deleterious(0.05) probably_damaging(0.975) TCGA-22-4591-01 5 23527770 23527770 A T PRDM9 Missense_Mutation p.K858M 0.07 deleterious(0) probably_damaging(0.999) TCGA-22-4591-01 5 32088003 32088003 G C PDZD2 Silent p.P1483P 0.11 TCGA-22-4591-01 5 40835284 40835284 C T RPL37 Splice_Site p.X1_splice 0.10 TCGA-22-4591-01 5 41004481 41004481 T G MROH2B Missense_Mutation p.E1387D 0.09 tolerated(0.25) benign(0.158) TCGA-22-4591-01 5 54403983 54403983 G T GZMA Missense_Mutation p.V130L 0.80 deleterious(0.02) possibly_damaging(0.82) TCGA-22-4591-01 5 57752858 57752858 G C PLK2 Nonsense_Mutation p.S357* 0.68 TCGA-22-4591-01 5 79855219 79855219 G A ANKRD34B Missense_Mutation p.T207M 0.80 tolerated(0.11) benign(0.006) TCGA-22-4591-01 6 10876187 10876187 G A GCM2 Silent p.S173S 0.21 TCGA-22-4591-01 6 110943359 110943359 C A CDK19 Missense_Mutation p.G348C 0.75 deleterious(0) probably_damaging(0.95) TCGA-22-4591-01 6 152646304 152646304 C T SYNE1 Missense_Mutation p.R5191H 0.26 probably_damaging(0.999) TCGA-22-4591-01 6 161507496 161507496 A G MAP3K4 Missense_Mutation p.K820E 0.53 deleterious(0) probably_damaging(0.97) TCGA-22-4591-01 6 26108213 26108213 G A HIST1H1T Missense_Mutation p.R37C 0.09 deleterious(0.03) benign(0.333) TCGA-22-4591-01 6 29761758 29761758 C T HLA-V Intron 0.85 TCGA-22-4591-01 6 97587257 97587257 T C KLHL32 3'UTR 0.78 TCGA-22-4591-01 7 100799995 100799995 C T AP1S1 Nonsense_Mutation p.R42* 0.09 TCGA-22-4591-01 7 102098135 102098135 C T ALKBH4 Silent p.S205S 0.12 TCGA-22-4591-01 7 105108864 105108872 TAGCTTTGG - PUS7 In_Frame_Del p.Q480_Y482del 0.41 TCGA-22-4591-01 7 148288129 148288129 C T C7orf33 Missense_Mutation p.L38F 0.23 deleterious_low_confidence(0.05) possibly_damaging(0.765) TCGA-22-4591-01 7 21765480 21765480 G T DNAH11 Missense_Mutation p.A2447S 0.26 benign(0.012) TCGA-22-4591-01 7 2265104 2265104 G T MAD1L1 Missense_Mutation p.H78N 0.18 tolerated(0.13) probably_damaging(0.997) TCGA-22-4591-01 7 38398270 38398270 A T TRGV3 Missense_Mutation p.L66Q 0.36 deleterious(0.02) probably_damaging(0.985) TCGA-22-4591-01 7 43827557 43827557 C T BLVRA Missense_Mutation p.R23W 0.32 deleterious(0) probably_damaging(1) TCGA-22-4591-01 7 47971571 47971571 T A PKD1L1 Missense_Mutation p.T161S 0.40 tolerated(0.1) benign(0) TCGA-22-4591-01 7 54617564 54617564 T C VSTM2A Missense_Mutation p.L112P 0.29 deleterious(0) probably_damaging(1) TCGA-22-4591-01 7 82996772 82996772 C A SEMA3E 3'UTR 0.38 TCGA-22-4591-01 7 87765310 87765310 A T ADAM22 Missense_Mutation p.E395V 0.32 tolerated(0.22) benign(0.005) TCGA-22-4591-01 7 89791267 89791267 G A STEAP1 Missense_Mutation p.V213I 0.09 deleterious(0) probably_damaging(0.997) TCGA-22-4591-01 7 93106878 93106878 T A CALCR Missense_Mutation p.D121V 0.14 deleterious(0) probably_damaging(1) TCGA-22-4591-01 7 96653605 96653605 C G DLX5 Missense_Mutation p.V111L 0.18 tolerated(0.56) benign(0.004) TCGA-22-4591-01 8 100712132 100712132 T C VPS13B Silent p.L2167L 0.40 TCGA-22-4591-01 8 101154288 101154288 C A FBXO43 Missense_Mutation p.R65I 0.28 deleterious(0.03) benign(0.017) TCGA-22-4591-01 8 10584038 10584038 C G SOX7 Missense_Mutation p.C178S 0.52 tolerated(0.23) probably_damaging(0.983) TCGA-22-4591-01 8 110287659 110287659 T C NUDCD1 Silent p.K365K 0.26 TCGA-22-4591-01 8 142366919 142366919 C A GPR20 3'UTR 0.29 TCGA-22-4591-01 8 144874434 144874434 G T SCRIB Silent p.L1490L 0.27 TCGA-22-4591-01 8 145773151 145773151 C A ARHGAP39 Missense_Mutation p.R440L 0.22 deleterious(0.02) possibly_damaging(0.655) TCGA-22-4591-01 8 2813175 2813175 C G CSMD1 Silent p.G3310G 0.32 TCGA-22-4591-01 8 8559823 8559823 C A CLDN23 5'UTR 0.22 TCGA-22-4591-01 8 95792623 95792623 G A DPY19L4 Missense_Mutation p.G538S 0.22 tolerated(0.12) possibly_damaging(0.641) TCGA-22-4591-01 9 131597803 131597803 G T CCBL1 Silent p.I333I 0.34 TCGA-22-4591-01 9 131859550 131859550 G A CRAT Silent p.A502A 0.56 TCGA-22-4591-01 9 13205963 13205963 C T MPDZ Missense_Mutation p.V476I 0.44 tolerated(0.23) benign(0.005) TCGA-22-4591-01 9 133506963 133506963 C T FUBP3 Missense_Mutation p.P433L 0.69 tolerated(0.2) benign(0.017) TCGA-22-4591-01 9 137801634 137801634 C T FCN1 3'UTR 0.36 TCGA-22-4591-01 9 41963905 41963905 C T RP11-204M4.2 RNA 0.14 TCGA-22-4591-01 X 102471403 102471403 C A BEX4 Missense_Mutation p.P108T 0.85 tolerated(0.34) probably_damaging(0.928) TCGA-22-4591-01 X 138714570 138714570 G C MCF2 Missense_Mutation p.P92R 0.38 deleterious(0) probably_damaging(1) TCGA-22-4591-01 X 140994860 140994860 A G MAGEC1 Missense_Mutation p.D557G 0.31 deleterious_low_confidence(0) possibly_damaging(0.539) TCGA-22-4591-01 X 19431583 19431583 C T MAP3K15 Splice_Site p.X531_splice 0.81 TCGA-22-4591-01 X 54783731 54783731 G T ITIH6 Missense_Mutation p.P926T 0.10 deleterious(0.03) benign(0.307) TCGA-22-4591-01 X 70612494 70612494 G A TAF1 Missense_Mutation p.G973R 0.33 deleterious(0) probably_damaging(0.999) TCGA-22-4593-01 10 22021984 22021984 C T MLLT10 Missense_Mutation p.S792F 0.31 deleterious(0.02) possibly_damaging(0.633) TCGA-22-4593-01 10 46961781 46961781 G T SYT15 3'Flank 0.62 TCGA-22-4593-01 10 95422928 95422928 C T PDE6C Silent p.A837A 0.26 TCGA-22-4593-01 11 14501234 14501234 G A COPB1 Silent p.N413N 0.40 TCGA-22-4593-01 11 31327799 31327799 T C DCDC1 Missense_Mutation p.T191A 0.33 tolerated(0.47) benign(0.006) TCGA-22-4593-01 11 4407427 4407427 G A TRIM21 Silent p.C273C 0.32 TCGA-22-4593-01 11 56230130 56230130 A G OR5M9 Missense_Mutation p.Y250H 0.45 deleterious(0.02) probably_damaging(0.996) TCGA-22-4593-01 11 58206696 58206696 A G OR5B12 Missense_Mutation p.I310T 0.32 deleterious_low_confidence(0.01) benign(0.006) TCGA-22-4593-01 11 60540959 60540959 T C MS4A15 Splice_Site p.X166_splice 0.33 TCGA-22-4593-01 11 65271306 65271306 G A MALAT1 RNA 0.28 TCGA-22-4593-01 11 66620276 66620276 C A PC Silent p.P515P 0.42 TCGA-22-4593-01 11 68848948 68848948 G A TPCN2 Missense_Mutation p.R557H 0.09 deleterious(0) probably_damaging(1) TCGA-22-4593-01 11 8707381 8707381 G A RPL27A 3'UTR 0.35 TCGA-22-4593-01 11 89133542 89133542 C A NOX4 Missense_Mutation p.W284C 0.08 deleterious(0) probably_damaging(0.933) TCGA-22-4593-01 12 102155097 102155097 T C GNPTAB Silent p.S981S 0.49 TCGA-22-4593-01 12 103984757 103984757 C T STAB2 Missense_Mutation p.P55L 0.58 deleterious(0.04) possibly_damaging(0.777) TCGA-22-4593-01 12 11420269 11420269 G C PRB3 Missense_Mutation p.P263A 0.52 tolerated_low_confidence(0.14) unknown(0) TCGA-22-4593-01 12 18691219 18691219 C G PIK3C2G Missense_Mutation p.S1110R 0.56 deleterious(0) probably_damaging(0.978) TCGA-22-4593-01 12 3039413 3039413 G C TULP3 Splice_Site p.X132_splice 0.25 TCGA-22-4593-01 12 48535522 48535522 G C PFKM Splice_Site p.X542_splice 0.17 TCGA-22-4593-01 12 48535523 48535523 G C PFKM Missense_Mutation p.R542S 0.17 deleterious(0.03) benign(0.191) TCGA-22-4593-01 12 49938088 49938088 C T KCNH3 Missense_Mutation p.A371V 0.26 deleterious(0) probably_damaging(0.999) TCGA-22-4593-01 12 53647205 53647205 A G MFSD5 Missense_Mutation p.I303V 0.22 deleterious(0.02) benign(0.02) TCGA-22-4593-01 12 54903646 54903646 C T NCKAP1L Silent p.A204A 0.29 TCGA-22-4593-01 12 56384546 56384546 G A RAB5B Silent p.G132G 0.24 TCGA-22-4593-01 12 57570994 57570994 C T LRP1 Missense_Mutation p.H1388Y 0.11 probably_damaging(0.992) TCGA-22-4593-01 12 57619107 57619107 G T NXPH4 Silent p.L168L 0.17 TCGA-22-4593-01 12 66849249 66849249 T A GRIP1 Missense_Mutation p.T380S 0.22 tolerated(0.33) benign(0.037) TCGA-22-4593-01 12 95228385 95228385 G A MIR492 3'Flank 0.28 TCGA-22-4593-01 12 99640175 99640175 G A ANKS1B Missense_Mutation p.L742F 0.27 deleterious(0) probably_damaging(0.999) TCGA-22-4593-01 13 25341415 25341415 C T RNF17 Missense_Mutation p.H46Y 0.29 tolerated_low_confidence(0.15) benign(0) TCGA-22-4593-01 13 32313690 32313690 C A RXFP2 5'UTR 0.78 TCGA-22-4593-01 13 40261703 40261703 G A COG6 Silent p.A284A 0.42 TCGA-22-4593-01 13 99371545 99371545 C - SLC15A1 Frame_Shift_Del p.A196Lfs*16 0.45 TCGA-22-4593-01 14 100835456 100835456 C T WARS Missense_Mutation p.V23I 0.23 deleterious_low_confidence(0.01) benign(0.208) TCGA-22-4593-01 14 103599089 103599089 A C TNFAIP2 Silent p.P475P 0.32 TCGA-22-4593-01 14 106066508 106066508 C A IGHE Missense_Mutation p.R394S 0.34 deleterious(0.02) possibly_damaging(0.651) TCGA-22-4593-01 14 106174701 106174701 C A IGHA1 Missense_Mutation p.C101F 0.10 tolerated(0.21) possibly_damaging(0.471) TCGA-22-4593-01 14 20249180 20249180 G T OR4M1 Missense_Mutation p.E233D 0.16 deleterious(0.04) benign(0.046) TCGA-22-4593-01 14 33014787 33014787 G A AKAP6 Missense_Mutation p.D310N 0.32 tolerated(0.76) benign(0.001) TCGA-22-4593-01 14 55903639 55903639 G A TBPL2 Missense_Mutation p.S83L 0.32 tolerated_low_confidence(0.11) benign(0.023) TCGA-22-4593-01 14 73437657 73437657 G A ZFYVE1 Missense_Mutation p.P756L 0.32 deleterious(0) probably_damaging(0.967) TCGA-22-4593-01 14 91444752 91444752 T C RPS6KA5 Missense_Mutation p.T98A 0.50 deleterious(0.03) benign(0.153) TCGA-22-4593-01 14 93673386 93673386 G A C14orf142 5'UTR 0.27 TCGA-22-4593-01 15 28357016 28357016 C T HERC2 Missense_Mutation p.A4800T 0.24 probably_damaging(0.987) TCGA-22-4593-01 15 41029852 41029852 C - RMDN3 Frame_Shift_Del p.E400Kfs*8 0.36 TCGA-22-4593-01 15 65885801 65885801 T C VWA9 Silent p.L260L 0.45 TCGA-22-4593-01 15 77472963 77472963 C A PEAK1 Nonsense_Mutation p.E436* 0.30 TCGA-22-4593-01 15 79749217 79749217 C G KIAA1024 Missense_Mutation p.S243C 0.36 tolerated(0.05) benign(0.285) TCGA-22-4593-01 15 86087101 86087101 C T AKAP13 Missense_Mutation p.L193F 0.49 deleterious(0) probably_damaging(0.999) TCGA-22-4593-01 16 1034928 1034928 G A SOX8 Missense_Mutation p.A295T 0.32 tolerated(0.17) benign(0.005) TCGA-22-4593-01 16 17202563 17202563 G T XYLT1 Silent p.R957R 0.33 TCGA-22-4593-01 16 19883337 19883337 C G GPRC5B Silent p.A277A 0.53 TCGA-22-4593-01 16 24921729 24921729 C A SLC5A11 Missense_Mutation p.P585T 0.49 tolerated(0.22) benign(0.001) TCGA-22-4593-01 16 2522769 2522769 C T NTN3 Silent p.R332R 0.24 TCGA-22-4593-01 16 29891243 29891243 G T SEZ6L2 Silent p.A505A 0.49 TCGA-22-4593-01 16 30785481 30785481 G A RNF40 3'UTR 0.37 TCGA-22-4593-01 16 49430384 49430384 C A C16orf78 Missense_Mutation p.P149T 0.56 tolerated(0.67) benign(0.015) TCGA-22-4593-01 16 75149143 75149143 G T LDHD Missense_Mutation p.P94T 0.25 deleterious(0) probably_damaging(0.999) TCGA-22-4593-01 16 84214991 84214991 C A TAF1C Silent p.A395A 0.64 TCGA-22-4593-01 16 84529384 84529384 G A TLDC1 Missense_Mutation p.H97Y 0.31 tolerated(0.34) benign(0.002) TCGA-22-4593-01 16 90075214 90075214 G C DBNDD1 Missense_Mutation p.N119K 0.39 deleterious(0) possibly_damaging(0.625) TCGA-22-4593-01 17 12656496 12656496 C A MYOCD Missense_Mutation p.P631T 0.22 deleterious(0) probably_damaging(0.999) TCGA-22-4593-01 17 17158245 17158245 T C COPS3 Silent p.L317L 0.26 TCGA-22-4593-01 17 18682266 18682266 T C FBXW10 Silent p.S938S 0.30 TCGA-22-4593-01 17 25639435 25639435 C T WSB1 3'UTR 0.25 TCGA-22-4593-01 17 28296243 28296243 G C EFCAB5 Missense_Mutation p.D209H 0.43 deleterious(0) probably_damaging(0.984) TCGA-22-4593-01 17 33690031 33690031 C T SLFN11 Missense_Mutation p.D266N 0.43 tolerated(0.55) benign(0.272) TCGA-22-4593-01 17 40937356 40937356 G T WNK4 Missense_Mutation p.E444D 0.29 deleterious(0) unknown(0) TCGA-22-4593-01 17 42248258 42248258 A T ASB16 Missense_Mutation p.Q34L 0.24 tolerated(0.27) benign(0.001) TCGA-22-4593-01 17 43893891 43893891 C A CRHR1 Missense_Mutation p.Q62K 0.69 tolerated(0.78) benign(0.098) TCGA-22-4593-01 17 60768056 60768056 G A MRC2 Missense_Mutation p.E1316K 0.26 deleterious(0.03) probably_damaging(0.951) TCGA-22-4593-01 17 61554676 61554676 A C ACE Missense_Mutation p.N74T 0.42 deleterious(0) benign(0.001) TCGA-22-4593-01 17 61895543 61895543 G A DDX42 Missense_Mutation p.A868T 0.20 tolerated_low_confidence(0.59) benign(0.001) TCGA-22-4593-01 17 62892954 62892954 T C LRRC37A3 Missense_Mutation p.E141G 0.28 deleterious(0.03) benign(0.071) TCGA-22-4593-01 17 63133599 63133599 G A RGS9 5'UTR 0.52 TCGA-22-4593-01 17 74625591 74625591 G T ST6GALNAC1 Missense_Mutation p.Q112K 0.60 benign(0.038) TCGA-22-4593-01 17 7579527 7579542 ACCATTGTTCAATATC - TP53 Frame_Shift_Del p.D49Sfs*69 0.62 TCGA-22-4593-01 17 76989736 76989736 C T CANT1 Missense_Mutation p.G368S 0.23 deleterious(0.01) probably_damaging(0.969) TCGA-22-4593-01 17 77708963 77708963 C T ENPP7 Missense_Mutation p.A174V 0.21 tolerated(0.16) possibly_damaging(0.523) TCGA-22-4593-01 17 910480 910480 C A ABR Silent p.L805L 0.05 TCGA-22-4593-01 18 3879841 3879841 G T DLGAP1 Silent p.T76T 0.55 TCGA-22-4593-01 18 580495 580495 G C CETN1 Missense_Mutation p.Q29H 0.55 deleterious(0.01) benign(0.167) TCGA-22-4593-01 18 59483071 59483071 C - RNF152 3'UTR 0.31 TCGA-22-4593-01 18 76753467 76753467 C T SALL3 Silent p.P492P 0.30 TCGA-22-4593-01 19 10791697 10791697 C T ILF3 Silent p.H320H 0.19 TCGA-22-4593-01 19 15529795 15529800 GCGATA - AKAP8L 5'UTR 0.61 TCGA-22-4593-01 19 16630913 16630913 C A C19orf44 3'UTR 0.27 TCGA-22-4593-01 19 22363521 22363521 C A ZNF676 Missense_Mutation p.G333V 0.11 deleterious(0) possibly_damaging(0.485) TCGA-22-4593-01 19 22847660 22847660 G C ZNF492 Missense_Mutation p.E397Q 0.20 deleterious(0.01) possibly_damaging(0.73) TCGA-22-4593-01 19 22847933 22847933 A T ZNF492 Missense_Mutation p.N488Y 0.56 tolerated(1) benign(0.383) TCGA-22-4593-01 19 22940298 22940298 T C ZNF99 Missense_Mutation p.R805G 0.25 tolerated(0.13) benign(0.072) TCGA-22-4593-01 19 39062862 39062862 G A RYR1 Silent p.L4650L 0.23 TCGA-22-4593-01 19 3959564 3959564 C T DAPK3 Silent p.T300T 0.68 TCGA-22-4593-01 19 40947390 40947390 C A SERTAD3 3'UTR 0.30 TCGA-22-4593-01 19 47844573 47844573 C A C5AR2 Missense_Mutation p.R173S 0.18 deleterious(0) probably_damaging(0.95) TCGA-22-4593-01 19 49225237 49225237 T A RASIP1 Missense_Mutation p.T856S 0.24 tolerated(0.39) benign(0.093) TCGA-22-4593-01 19 51628378 51628378 C A SIGLEC9 Silent p.G49G 0.25 TCGA-22-4593-01 19 52941348 52941348 A C ZNF534 Missense_Mutation p.K225T 0.23 deleterious(0) benign(0.057) TCGA-22-4593-01 19 53057259 53057259 C T ZNF808 Missense_Mutation p.L364F 0.22 deleterious(0.03) possibly_damaging(0.849) TCGA-22-4593-01 19 54818681 54818681 A G LILRA5 3'UTR 0.18 TCGA-22-4593-01 19 58385007 58385007 G C ZNF814 Missense_Mutation p.S584C 0.31 tolerated(0.09) benign(0.001) TCGA-22-4593-01 19 7125332 7125332 C A INSR Nonsense_Mutation p.E1074* 0.41 TCGA-22-4593-01 19 8174625 8174625 C G FBN3 Missense_Mutation p.C1449S 0.48 deleterious(0) probably_damaging(1) TCGA-22-4593-01 19 8657685 8657685 C T ADAMTS10 Missense_Mutation p.E517K 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-22-4593-01 19 9204359 9204359 G A OR1M1 Missense_Mutation p.A147T 0.25 tolerated(0.4) benign(0.001) TCGA-22-4593-01 1 10689653 10689653 C A PEX14 Missense_Mutation p.P248Q 0.35 deleterious(0.01) benign(0.401) TCGA-22-4593-01 1 112999476 112999476 G A CTTNBP2NL Silent p.G454G 0.38 TCGA-22-4593-01 1 120302554 120302554 A G HMGCS2 Silent p.R206R 0.37 TCGA-22-4593-01 1 12169625 12169625 A C TNFRSF8 Missense_Mutation p.T142P 0.24 deleterious(0) probably_damaging(0.997) TCGA-22-4593-01 1 144873951 144873951 G T PDE4DIP Missense_Mutation p.A1669D 0.21 deleterious(0.04) possibly_damaging(0.826) TCGA-22-4593-01 1 149763061 149763061 G A FCGR1A Silent p.Q371Q 0.15 TCGA-22-4593-01 1 151787643 151787643 T A RORC Missense_Mutation p.Y186F 0.42 tolerated(0.32) benign(0.001) TCGA-22-4593-01 1 155899625 155899625 C A KIAA0907 Missense_Mutation p.A88S 0.32 tolerated(0.6) benign(0.055) TCGA-22-4593-01 1 159901605 159901605 G C IGSF9 Silent p.T453T 0.33 TCGA-22-4593-01 1 165723478 165723478 C A TMCO1 Missense_Mutation p.R132I 0.38 deleterious(0) probably_damaging(0.983) TCGA-22-4593-01 1 171236736 171236736 T A FMO1 Missense_Mutation p.C63S 0.35 tolerated(1) benign(0.007) TCGA-22-4593-01 1 178848052 178848052 C G RALGPS2 Missense_Mutation p.P254R 0.30 deleterious(0) benign(0.34) TCGA-22-4593-01 1 183204743 183204743 G A LAMC2 Silent p.L778L 0.39 TCGA-22-4593-01 1 197704823 197704823 C A DENND1B Intron 0.35 TCGA-22-4593-01 1 202911228 202911228 C A ADIPOR1 Silent p.V308V 0.22 TCGA-22-4593-01 1 207646198 207646198 C T CR2 Missense_Mutation p.T551M 0.55 tolerated(0.06) benign(0.273) TCGA-22-4593-01 1 21031088 21031088 C T KIF17 Silent p.T325T 0.27 TCGA-22-4593-01 1 216062176 216062176 T C USH2A Silent p.S2605S 0.55 TCGA-22-4593-01 1 222801365 222801365 A G MIA3 Missense_Mutation p.K268R 0.23 tolerated(0.06) benign(0.307) TCGA-22-4593-01 1 222835656 222835656 G A MIA3 Silent p.R1748R 0.25 TCGA-22-4593-01 1 226048639 226048639 G - TMEM63A Frame_Shift_Del p.Q382Sfs*55 0.41 TCGA-22-4593-01 1 233497881 233497881 A T MLK4 Missense_Mutation p.Q465L 0.55 deleterious(0.01) possibly_damaging(0.721) TCGA-22-4593-01 1 234534202 234534202 G A TARBP1 Missense_Mutation p.A1390V 0.35 tolerated(0.51) benign(0.029) TCGA-22-4593-01 1 248059182 248059182 C T OR2W3 Silent p.A98A 0.29 TCGA-22-4593-01 1 36358709 36358709 G T AGO1 Missense_Mutation p.E114D 0.37 tolerated(0.3) probably_damaging(0.989) TCGA-22-4593-01 1 38034731 38034731 C A GNL2 Missense_Mutation p.R530L 0.31 tolerated(0.07) benign(0.124) TCGA-22-4593-01 1 39797158 39797158 C T MACF1 Intron 0.42 TCGA-22-4593-01 1 9075206 9075206 G A SLC2A7 Nonsense_Mutation p.Q229* 0.42 TCGA-22-4593-01 20 21142527 21142527 G C RP4-777D9.2 Intron 0.39 TCGA-22-4593-01 20 31672750 31672750 G T BPIFB4 Missense_Mutation p.G244C 0.34 deleterious(0) probably_damaging(0.999) TCGA-22-4593-01 20 35444582 35444582 C T SOGA1 Silent p.S421S 0.14 TCGA-22-4593-01 20 47880003 47880003 C T ZNFX1 Silent p.K723K 0.36 TCGA-22-4593-01 20 52645146 52645146 G A BCAS1 Missense_Mutation p.P170S 0.14 tolerated(0.23) benign(0.228) TCGA-22-4593-01 20 58440891 58440891 G A SYCP2 Silent p.F1450F 0.12 TCGA-22-4593-01 20 62196906 62196906 C T HELZ2 Missense_Mutation p.G1090E 0.22 tolerated(0.07) possibly_damaging(0.521) TCGA-22-4593-01 21 41725408 41725408 G A DSCAM Silent p.G306G 0.16 TCGA-22-4593-01 22 39417433 39417433 T A APOBEC3D 5'UTR 0.13 TCGA-22-4593-01 2 105894086 105894097 ATCTTGGTTATT - TGFBRAP1 In_Frame_Del p.N499_D502del 0.27 TCGA-22-4593-01 2 136519470 136519470 C T UBXN4 Silent p.I197I 0.27 TCGA-22-4593-01 2 136873097 136873097 C A CXCR4 Missense_Mutation p.R138L 0.18 deleterious(0) probably_damaging(1) TCGA-22-4593-01 2 141202195 141202195 G T LRP1B Missense_Mutation p.L3371I 0.24 possibly_damaging(0.694) TCGA-22-4593-01 2 141253313 141253313 T C LRP1B Missense_Mutation p.K2952R 0.26 possibly_damaging(0.621) TCGA-22-4593-01 2 141299461 141299461 C T LRP1B Missense_Mutation p.R2425K 0.14 benign(0.067) TCGA-22-4593-01 2 153575168 153575168 G A ARL6IP6 Silent p.S10S 0.52 TCGA-22-4593-01 2 155158018 155158018 G T GALNT13 Missense_Mutation p.G358C 0.42 deleterious(0) benign(0.15) TCGA-22-4593-01 2 163291882 163291882 G T KCNH7 Missense_Mutation p.Q594K 0.15 deleterious(0.01) possibly_damaging(0.791) TCGA-22-4593-01 2 200173623 200173623 G T SATB2 Missense_Mutation p.L534I 0.23 deleterious(0) probably_damaging(1) TCGA-22-4593-01 2 216259272 216259272 T C FN1 Missense_Mutation p.I1259V 0.33 tolerated(0.55) benign(0.013) TCGA-22-4593-01 2 224809975 224809975 C T WDFY1 Silent p.P9P 0.33 TCGA-22-4593-01 2 239237421 239237423 ATA - TRAF3IP1 In_Frame_Del p.N151del 0.51 TCGA-22-4593-01 2 38978464 38978464 G A SRSF7 5'UTR 0.28 TCGA-22-4593-01 2 43968158 43968158 A C PLEKHH2 Missense_Mutation p.H1066P 0.51 deleterious(0) probably_damaging(0.976) TCGA-22-4593-01 2 48808979 48808979 G T STON1-GTF2A1L Missense_Mutation p.V403F 0.34 tolerated(0.55) benign(0.009) TCGA-22-4593-01 3 108182048 108182048 G T MYH15 Missense_Mutation p.L612I 0.18 tolerated(0.07) benign(0.032) TCGA-22-4593-01 3 113329993 113329993 T C SIDT1 Splice_Site p.X619_splice 0.28 TCGA-22-4593-01 3 145828223 145828223 T C PLOD2 Missense_Mutation p.I117M 0.15 deleterious(0) possibly_damaging(0.839) TCGA-22-4593-01 3 185823674 185823674 C T ETV5 5'UTR 0.19 TCGA-22-4593-01 3 186362564 186362564 C T FETUB Missense_Mutation p.T150M 0.14 tolerated(1) benign(0.003) TCGA-22-4593-01 3 190936651 190936651 A G OSTN Missense_Mutation p.N73S 0.68 deleterious(0) probably_damaging(0.998) TCGA-22-4593-01 3 196229779 196229779 T C RNF168 Missense_Mutation p.K89R 0.17 deleterious(0.02) benign(0.007) TCGA-22-4593-01 3 196754761 196754761 G A MFI2 Missense_Mutation p.R24W 0.27 deleterious(0) probably_damaging(0.996) TCGA-22-4593-01 3 197505234 197505234 A G FYTTD1 Missense_Mutation p.T253A 0.17 tolerated(0.14) benign(0.012) TCGA-22-4593-01 3 39433022 39433022 G T SLC25A38 Missense_Mutation p.A123S 0.49 tolerated(0.23) possibly_damaging(0.813) TCGA-22-4593-01 3 65342127 65342127 C A MAGI1 Missense_Mutation p.G1439C 0.76 deleterious_low_confidence(0.01) unknown(0) TCGA-22-4593-01 3 88205461 88205461 G A C3orf38 Silent p.L222L 0.10 TCGA-22-4593-01 4 118975203 118975203 G A NDST3 Silent p.T46T 0.37 TCGA-22-4593-01 4 122254006 122254006 A G QRFPR Missense_Mutation p.I256T 0.38 tolerated(0.06) benign(0.014) TCGA-22-4593-01 4 126411435 126411435 G T FAT4 Silent p.G4486G 0.45 TCGA-22-4593-01 4 153244155 153244156 - C FBXW7 Frame_Shift_Ins p.S668Efs*26 0.39 TCGA-22-4593-01 4 156651265 156651265 G A GUCY1A3 Missense_Mutation p.G652E 0.14 deleterious(0.03) probably_damaging(0.998) TCGA-22-4593-01 4 178882052 178882052 T C LINC01098 Missense_Mutation p.W17R 0.50 tolerated_low_confidence(0.17) possibly_damaging(0.788) TCGA-22-4593-01 4 39436232 39436232 C T KLB Missense_Mutation p.P410S 0.72 deleterious(0.01) probably_damaging(0.952) TCGA-22-4593-01 4 66189898 66189898 C T EPHA5 Silent p.Q1016Q 0.17 TCGA-22-4593-01 4 66197617 66197617 C A EPHA5 Intron 0.26 TCGA-22-4593-01 4 66231713 66231713 C A EPHA5 Missense_Mutation p.V663F 0.49 deleterious(0) probably_damaging(0.986) TCGA-22-4593-01 4 80929677 80929677 C A ANTXR2 Missense_Mutation p.V347L 0.54 tolerated(0.05) possibly_damaging(0.62) TCGA-22-4593-01 4 87706382 87706382 A T PTPN13 Splice_Site p.X2045_splice 0.48 TCGA-22-4593-01 5 140554820 140554820 G A PCDHB7 3'UTR 0.14 TCGA-22-4593-01 5 1422092 1422092 C T SLC6A3 Missense_Mutation p.D231N 0.13 tolerated(0.27) benign(0.008) TCGA-22-4593-01 5 14330959 14330959 C G TRIO Missense_Mutation p.R602G 0.14 benign(0.037) TCGA-22-4593-01 5 41382419 41382419 G T PLCXD3 Missense_Mutation p.D107E 0.30 tolerated(0.18) benign(0.17) TCGA-22-4593-01 5 45645701 45645701 C T HCN1 Nonsense_Mutation p.W145* 0.26 TCGA-22-4593-01 5 56177955 56177955 C T MAP3K1 Silent p.S976S 0.04 TCGA-22-4593-01 5 71491801 71491801 C A MAP1B Silent p.V873V 0.73 TCGA-22-4593-01 5 72359685 72359685 C G FCHO2 Missense_Mutation p.L455V 0.26 tolerated(0.2) possibly_damaging(0.695) TCGA-22-4593-01 5 7709413 7709416 CTTG - ADCY2 Frame_Shift_Del p.Y497* 0.59 TCGA-22-4593-01 5 80639988 80639988 C T ACOT12 Missense_Mutation p.R324H 0.43 deleterious(0.01) probably_damaging(0.957) TCGA-22-4593-01 6 100062541 100062541 G T PRDM13 Missense_Mutation p.G677V 0.29 tolerated_low_confidence(0.07) benign(0.411) TCGA-22-4593-01 6 100062564 100062564 G T PRDM13 Missense_Mutation p.D685Y 0.30 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-22-4593-01 6 114379015 114379015 C T HS3ST5 Silent p.Q149Q 0.50 TCGA-22-4593-01 6 161969933 161969933 C T PARK2 Missense_Mutation p.D346N 0.04 tolerated(0.2) benign(0.079) TCGA-22-4593-01 6 163985753 163985753 G A QKI Intron 0.31 TCGA-22-4593-01 6 170592599 170592599 T A DLL1 Missense_Mutation p.M590L 0.25 tolerated(0.07) benign(0.08) TCGA-22-4593-01 6 28327373 28327373 G C ZKSCAN3 Missense_Mutation p.E4Q 0.45 deleterious(0.02) possibly_damaging(0.848) TCGA-22-4593-01 6 311944 311944 T G DUSP22 Missense_Mutation p.S40R 0.35 deleterious(0.03) possibly_damaging(0.447) TCGA-22-4593-01 6 32163314 32163314 C A NOTCH4 Missense_Mutation p.C1971F 0.73 deleterious_low_confidence(0.01) benign(0.314) TCGA-22-4593-01 6 43172777 43172777 G C CUL9 Missense_Mutation p.R1519P 0.21 deleterious(0) probably_damaging(0.994) TCGA-22-4593-01 6 43970796 43970796 G T C6orf223 Missense_Mutation p.R221L 0.74 tolerated_low_confidence(0.12) benign(0.302) TCGA-22-4593-01 6 45514801 45514801 C G RUNX2 Missense_Mutation p.T442S 0.17 tolerated(1) probably_damaging(0.963) TCGA-22-4593-01 6 66063410 66063410 C A EYS Missense_Mutation p.G467V 0.27 deleterious(0) benign(0.231) TCGA-22-4593-01 6 70637829 70637829 G T COL19A1 Nonsense_Mutation p.E99* 0.40 TCGA-22-4593-01 6 86159901 86159901 C A NT5E Missense_Mutation p.A15D 0.65 tolerated(0.2) possibly_damaging(0.665) TCGA-22-4593-01 7 139661962 139661962 A G TBXAS1 Missense_Mutation p.Y402C 0.23 deleterious(0) probably_damaging(1) TCGA-22-4593-01 7 1542595 1542595 C T INTS1 Silent p.V97V 0.52 TCGA-22-4593-01 7 39612040 39612040 A T YAE1D1 Missense_Mutation p.D139V 0.26 deleterious(0) possibly_damaging(0.851) TCGA-22-4593-01 7 47886476 47886476 C A PKD1L1 Splice_Site p.X1718_splice 0.17 TCGA-22-4593-01 7 47886477 47886477 C A PKD1L1 Missense_Mutation p.S1718I 0.16 deleterious(0) probably_damaging(0.996) TCGA-22-4593-01 7 5540481 5540481 G A FBXL18 Silent p.S473S 0.52 TCGA-22-4593-01 7 72040533 72040533 C T TYW1B Missense_Mutation p.D279N 0.40 tolerated(0.07) possibly_damaging(0.905) TCGA-22-4593-01 7 91851289 91851289 A T KRIT1 Missense_Mutation p.L497Q 0.41 deleterious(0.04) possibly_damaging(0.794) TCGA-22-4593-01 7 97800938 97800938 A T LMTK2 Missense_Mutation p.E248V 0.39 deleterious(0) probably_damaging(0.999) TCGA-22-4593-01 8 105263842 105263842 G T RIMS2 Nonsense_Mutation p.G1282* 0.19 TCGA-22-4593-01 8 105503379 105503379 C A LRP12 Missense_Mutation p.R701L 0.51 tolerated(0.29) benign(0.044) TCGA-22-4593-01 8 107718644 107718644 C T OXR1 Missense_Mutation p.H300Y 0.32 tolerated(0.23) benign(0.02) TCGA-22-4593-01 8 113236905 113236905 T G CSMD3 3'UTR 0.23 TCGA-22-4593-01 8 113364684 113364684 A T CSMD3 Missense_Mutation p.D2072E 0.22 tolerated(0.11) probably_damaging(0.983) TCGA-22-4593-01 8 113364700 113364700 C T CSMD3 Missense_Mutation p.R2067K 0.23 deleterious(0.02) possibly_damaging(0.792) TCGA-22-4593-01 8 132996394 132996394 A T EFR3A Missense_Mutation p.Q528H 0.32 deleterious(0.05) benign(0.112) TCGA-22-4593-01 8 144331915 144331915 G T ZFP41 5'UTR 0.25 TCGA-22-4593-01 8 144331916 144331916 G T ZFP41 5'UTR 0.25 TCGA-22-4593-01 8 2033485 2033485 C T MYOM2 Missense_Mutation p.P536L 0.21 tolerated(0.08) probably_damaging(0.991) TCGA-22-4593-01 8 25280850 25280850 A C GNRH1 5'UTR 0.18 TCGA-22-4593-01 8 89180014 89180014 G T MMP16 Missense_Mutation p.P198H 0.49 deleterious(0) probably_damaging(1) TCGA-22-4593-01 9 120475753 120475753 C T TLR4 Silent p.L449L 0.30 TCGA-22-4593-01 9 135139608 135139608 C G SETX 3'UTR 0.38 TCGA-22-4593-01 9 140057129 140057129 C A GRIN1 Missense_Mutation p.L672M 0.56 deleterious(0) probably_damaging(1) TCGA-22-4593-01 9 21971017 21971017 G A CDKN2A Missense_Mutation p.P114L 0.75 deleterious(0) probably_damaging(1) TCGA-22-4593-01 9 26984516 26984516 G A IFT74 Missense_Mutation p.E142K 0.34 deleterious(0) possibly_damaging(0.698) TCGA-22-4593-01 9 34098402 34098402 C A DCAF12 Missense_Mutation p.A239S 0.73 tolerated(0.67) benign(0.197) TCGA-22-4593-01 X 110928309 110928309 C T ALG13 Missense_Mutation p.H121Y 0.47 tolerated_low_confidence(0.08) possibly_damaging(0.826) TCGA-22-4593-01 X 115574932 115574932 G T SLC6A14 Silent p.G210G 0.37 TCGA-22-4593-01 X 17746389 17746389 C T NHS Missense_Mutation p.A1367V 0.72 tolerated(0.06) probably_damaging(0.999) TCGA-22-4593-01 X 47086599 47086599 G A CDK16 Missense_Mutation p.D495N 0.63 tolerated(0.14) benign(0.007) TCGA-22-4593-01 X 54814966 54814966 C G ITIH6 Missense_Mutation p.D245H 0.63 tolerated(0.13) benign(0.142) TCGA-22-4593-01 X 78427575 78427575 A G GPR174 3'UTR 1.00 TCGA-22-4594-01 10 105420774 105420774 C T SH3PXD2A Missense_Mutation p.E191K 0.05 deleterious(0.02) probably_damaging(0.968) TCGA-22-4594-01 10 127459118 127459118 C T MMP21 Missense_Mutation p.R341H 0.09 tolerated(0.21) benign(0.041) TCGA-22-4594-01 10 13151003 13151003 G T OPTN 5'UTR 0.31 TCGA-22-4594-01 10 15697387 15697387 A G ITGA8 Missense_Mutation p.Y323H 0.05 tolerated(0.11) probably_damaging(1) TCGA-22-4594-01 10 24908489 24908489 G C ARHGAP21 Missense_Mutation p.R779G 0.05 tolerated(0.16) probably_damaging(0.995) TCGA-22-4594-01 10 27328936 27328936 T G ANKRD26 Missense_Mutation p.E778A 0.08 tolerated(0.08) probably_damaging(0.998) TCGA-22-4594-01 10 28032196 28032196 G C MKX Missense_Mutation p.P50R 0.11 tolerated_low_confidence(0.08) benign(0.136) TCGA-22-4594-01 10 31138918 31138918 A T ZNF438 Missense_Mutation p.L139Q 0.16 tolerated(0.5) benign(0.047) TCGA-22-4594-01 10 35321424 35321424 T A CUL2 Splice_Site p.X390_splice 0.36 TCGA-22-4594-01 10 50530877 50530877 C G C10orf71 Missense_Mutation p.A96G 0.09 deleterious(0) probably_damaging(1) TCGA-22-4594-01 10 61005515 61005515 G T PHYHIPL 3'UTR 0.31 TCGA-22-4594-01 10 858816 858816 T A LARP4B 3'UTR 0.15 TCGA-22-4594-01 10 94110857 94110857 G T MARCH5 Missense_Mutation p.A244S 0.17 tolerated(0.08) benign(0.175) TCGA-22-4594-01 11 11470432 11470432 G - GALNT18 Frame_Shift_Del p.S96Ffs*19 0.26 TCGA-22-4594-01 11 117774380 117774380 C T TMPRSS13 Missense_Mutation p.S556N 0.08 deleterious(0) possibly_damaging(0.735) TCGA-22-4594-01 11 124189972 124189972 C G OR8D2 Missense_Mutation p.G41A 0.15 deleterious(0.04) benign(0.012) TCGA-22-4594-01 11 126145308 126145308 C T FOXRED1 Nonsense_Mutation p.Q240* 0.21 TCGA-22-4594-01 11 1265653 1265653 A T MUC5B Missense_Mutation p.S2515C 0.17 unknown(0) TCGA-22-4594-01 11 15262026 15262026 C G INSC Missense_Mutation p.P523R 0.17 deleterious(0.01) probably_damaging(0.95) TCGA-22-4594-01 11 17428190 17428190 C T ABCC8 Missense_Mutation p.R1103Q 0.28 tolerated(0.11) benign(0.005) TCGA-22-4594-01 11 18750407 18750407 C A PTPN5 3'UTR 0.11 TCGA-22-4594-01 11 20959344 20959344 A G NELL1 Missense_Mutation p.Y337C 0.14 deleterious(0.02) probably_damaging(0.947) TCGA-22-4594-01 11 27016481 27016481 C A FIBIN Silent p.S136S 0.18 TCGA-22-4594-01 11 27147227 27147227 G C BBOX1 Missense_Mutation p.R288P 0.22 deleterious(0.01) probably_damaging(0.994) TCGA-22-4594-01 11 31616364 31616364 T C ELP4 Silent p.D143D 0.06 TCGA-22-4594-01 11 3661332 3661332 C A ART5 Missense_Mutation p.E109D 0.22 tolerated(0.16) benign(0.14) TCGA-22-4594-01 11 45672245 45672245 C T CHST1 Missense_Mutation p.G77S 0.27 deleterious(0) probably_damaging(1) TCGA-22-4594-01 11 46916245 46916245 G A LRP4 Missense_Mutation p.R479C 0.18 deleterious(0.01) possibly_damaging(0.462) TCGA-22-4594-01 11 5153244 5153244 A G OR52A5 Missense_Mutation p.L210P 0.27 tolerated(0.06) probably_damaging(0.936) TCGA-22-4594-01 11 5255587 5255587 C A HBD Missense_Mutation p.G26V 0.08 tolerated(0.11) possibly_damaging(0.613) TCGA-22-4594-01 11 55606972 55606972 G T OR5D16 Missense_Mutation p.A249S 0.24 deleterious(0.02) possibly_damaging(0.461) TCGA-22-4594-01 11 557090 557090 G A C11orf35 Missense_Mutation p.R241W 0.29 tolerated(0.16) benign(0.001) TCGA-22-4594-01 11 56380337 56380337 A T OR5M1 Silent p.I214I 0.06 TCGA-22-4594-01 11 57373890 57373890 A T SERPING1 Missense_Mutation p.K300M 0.24 deleterious(0) probably_damaging(0.993) TCGA-22-4594-01 11 57581838 57581838 A G CTNND1 Silent p.K898K 0.17 TCGA-22-4594-01 11 58391878 58391878 G A CNTF Silent p.L162L 0.08 TCGA-22-4594-01 11 59631531 59631531 T C TCN1 Silent p.L36L 0.07 TCGA-22-4594-01 11 62487655 62487655 C G HNRNPUL2 Silent p.V540V 0.06 TCGA-22-4594-01 11 6265313 6265313 G A CNGA4 Missense_Mutation p.G468R 0.05 deleterious(0) probably_damaging(1) TCGA-22-4594-01 11 63971056 63971056 C G STIP1 Missense_Mutation p.I507M 0.10 deleterious(0) probably_damaging(0.953) TCGA-22-4594-01 11 64418948 64418948 A T NRXN2 Silent p.G899G 0.23 TCGA-22-4594-01 11 64575552 64575552 G A MEN1 Silent p.S160S 0.09 TCGA-22-4594-01 11 7063941 7063941 C A NLRP14 Missense_Mutation p.S228R 0.05 deleterious(0) probably_damaging(0.971) TCGA-22-4594-01 11 8159978 8159978 G T RIC3 Intron 0.04 TCGA-22-4594-01 11 88300635 88300635 C T GRM5 Missense_Mutation p.G739E 0.26 deleterious(0) probably_damaging(0.987) TCGA-22-4594-01 11 92616332 92616332 A G FAT3 Missense_Mutation p.Y4237C 0.07 possibly_damaging(0.806) TCGA-22-4594-01 11 92714854 92714854 G A MTNR1B Nonsense_Mutation p.W155* 0.28 TCGA-22-4594-01 11 95504617 95504617 C A FAM76B 3'UTR 0.39 TCGA-22-4594-01 12 100660749 100660749 C A DEPDC4 Missense_Mutation p.G36W 0.33 deleterious(0.04) benign(0.021) TCGA-22-4594-01 12 112171823 112171823 C T ACAD10 Silent p.A528A 0.25 TCGA-22-4594-01 12 121757502 121757502 A G ANAPC5 Silent p.Y545Y 0.33 TCGA-22-4594-01 12 13716178 13716178 C T GRIN2B Missense_Mutation p.D1332N 0.17 deleterious(0) benign(0.158) TCGA-22-4594-01 12 2937146 2937146 G T NRIP2 Missense_Mutation p.Q216K 0.15 tolerated(0.2) possibly_damaging(0.507) TCGA-22-4594-01 12 305331 305331 C G SLC6A12 Missense_Mutation p.A429P 0.36 deleterious(0) probably_damaging(0.941) TCGA-22-4594-01 12 31945059 31945059 C - H3F3C Frame_Shift_Del p.A16Pfs*21 0.23 TCGA-22-4594-01 12 32369326 32369326 G T BICD1 Missense_Mutation p.R120L 0.20 deleterious(0) possibly_damaging(0.81) TCGA-22-4594-01 12 394684 394684 G T KDM5A Missense_Mutation p.P1671T 0.15 deleterious_low_confidence(0.03) benign(0.026) TCGA-22-4594-01 12 43822063 43822063 C G ADAMTS20 Missense_Mutation p.R1309T 0.25 deleterious(0.03) probably_damaging(0.994) TCGA-22-4594-01 12 43944781 43944781 G T ADAMTS20 Missense_Mutation p.H128Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-22-4594-01 12 46244313 46244313 G - ARID2 Frame_Shift_Del p.G803Afs*19 0.16 TCGA-22-4594-01 12 51133354 51133354 A T DIP2B Missense_Mutation p.T1447S 0.08 tolerated(0.24) benign(0.124) TCGA-22-4594-01 12 52841185 52841185 C A KRT6B Missense_Mutation p.S495I 0.33 tolerated(0.12) unknown(0) TCGA-22-4594-01 12 53682107 53682107 G - ESPL1 Frame_Shift_Del p.E1511Kfs*24 0.30 TCGA-22-4594-01 12 54757093 54757093 G T GPR84 Silent p.I181I 0.23 TCGA-22-4594-01 12 54930738 54930738 C T NCKAP1L Silent p.N1028N 0.13 TCGA-22-4594-01 12 58005702 58005702 C A ARHGEF25 Intron 0.23 TCGA-22-4594-01 12 58006988 58006988 C A ARHGEF25 Intron 0.25 TCGA-22-4594-01 12 58019446 58019446 C A SLC26A10 Missense_Mutation p.A537E 0.13 deleterious(0) probably_damaging(0.975) TCGA-22-4594-01 12 6219659 6219659 G T VWF Missense_Mutation p.A138D 0.30 deleterious(0) probably_damaging(0.993) TCGA-22-4594-01 12 66152402 66152402 G T RPSAP52 RNA 0.22 TCGA-22-4594-01 12 6955005 6955005 G A CDCA3 3'Flank 0.18 TCGA-22-4594-01 12 81851646 81851646 C A PPFIA2 Splice_Site p.X102_splice 0.12 TCGA-22-4594-01 13 100425077 100425077 G T CLYBL Splice_Site p.X21_splice 0.20 TCGA-22-4594-01 13 101881773 101881773 C G NALCN Missense_Mutation p.E533Q 0.08 deleterious(0.04) benign(0.18) TCGA-22-4594-01 13 20796879 20796879 C A GJB6 Silent p.L247L 0.16 TCGA-22-4594-01 13 26788900 26788900 C A RNF6 Silent p.V373V 0.19 TCGA-22-4594-01 13 27847257 27847257 G T RASL11A Missense_Mutation p.D119Y 0.19 deleterious(0.03) benign(0.252) TCGA-22-4594-01 13 28494567 28494567 G T PDX1 Missense_Mutation p.G98W 0.42 tolerated(0.06) possibly_damaging(0.465) TCGA-22-4594-01 13 29600350 29600350 T C MTUS2 Silent p.S515S 0.20 TCGA-22-4594-01 13 50590134 50590134 C G KCNRG Missense_Mutation p.Q169E 0.17 tolerated(0.51) benign(0.036) TCGA-22-4594-01 13 53422568 53422568 T A PCDH8 Missense_Mutation p.S2C 0.20 deleterious_low_confidence(0.01) benign(0.039) TCGA-22-4594-01 13 70275857 70275857 C A KLHL1 Missense_Mutation p.V742L 0.08 deleterious(0.05) benign(0.177) TCGA-22-4594-01 13 77589591 77589591 G T FBXL3 Missense_Mutation p.T199K 0.21 tolerated(0.11) probably_damaging(0.94) TCGA-22-4594-01 13 95686946 95686947 - AA ABCC4 Frame_Shift_Ins p.L1261Ffs*59 0.28 TCGA-22-4594-01 13 98017421 98017421 T A MBNL2 Missense_Mutation p.S330R 0.05 deleterious(0.03) benign(0.138) TCGA-22-4594-01 14 101396317 101396317 C A SNORD113-3 RNA 0.17 TCGA-22-4594-01 14 19553743 19553743 C A POTEG Nonsense_Mutation p.C109* 0.03 TCGA-22-4594-01 14 20296390 20296390 C A OR4N2 Silent p.P261P 0.04 TCGA-22-4594-01 14 23344774 23344774 C G LRP10 Missense_Mutation p.P206R 0.20 deleterious(0) probably_damaging(0.962) TCGA-22-4594-01 14 24543343 24543343 G C CPNE6 Intron 0.18 TCGA-22-4594-01 14 24543346 24543346 C A CPNE6 Intron 0.18 TCGA-22-4594-01 14 51710599 51710599 C T TMX1 Nonsense_Mutation p.Q60* 0.07 TCGA-22-4594-01 14 55169102 55169102 G A SAMD4A Silent p.Q173Q 0.07 TCGA-22-4594-01 14 72137937 72137937 C T SIPA1L1 Missense_Mutation p.A786V 0.07 deleterious(0) probably_damaging(0.996) TCGA-22-4594-01 14 72985173 72985173 G - RGS6 Frame_Shift_Del p.D403Ifs*7 0.20 TCGA-22-4594-01 14 92347750 92347750 C T FBLN5 Missense_Mutation p.C292Y 0.11 deleterious(0) probably_damaging(0.997) TCGA-22-4594-01 15 101555562 101555562 G T LRRK1 Missense_Mutation p.A522S 0.22 tolerated(1) benign(0.001) TCGA-22-4594-01 15 23890371 23890371 G T MAGEL2 Missense_Mutation p.P237H 0.27 deleterious(0) possibly_damaging(0.816) TCGA-22-4594-01 15 24922476 24922476 G A NPAP1 Missense_Mutation p.V488I 0.25 tolerated(0.54) benign(0.049) TCGA-22-4594-01 15 42598795 42598795 G T GANC Missense_Mutation p.D204Y 0.20 probably_damaging(1) TCGA-22-4594-01 15 62254084 62254084 C A VPS13C Silent p.L1204L 0.05 TCGA-22-4594-01 15 74623069 74623069 C A CCDC33 Missense_Mutation p.H508N 0.17 deleterious(0.02) possibly_damaging(0.888) TCGA-22-4594-01 15 78837250 78837250 G A PSMA4 Silent p.Q109Q 0.08 TCGA-22-4594-01 15 83332324 83332324 C G AP3B2 Missense_Mutation p.D810H 0.06 deleterious(0.01) possibly_damaging(0.861) TCGA-22-4594-01 15 84659927 84659927 G C ADAMTSL3 Missense_Mutation p.A1312P 0.12 tolerated(0.29) benign(0.02) TCGA-22-4594-01 15 85327895 85327895 G T ZNF592 Silent p.V663V 0.08 TCGA-22-4594-01 15 89401848 89401848 C A ACAN Missense_Mutation p.T2011N 0.18 tolerated(0.37) probably_damaging(0.917) TCGA-22-4594-01 16 1291313 1291313 A T TPSAB1 Missense_Mutation p.H74L 0.18 deleterious(0) possibly_damaging(0.767) TCGA-22-4594-01 16 20348776 20348776 C A UMOD Splice_Site p.X526_splice 0.19 TCGA-22-4594-01 16 31102649 31102649 G A VKORC1 Missense_Mutation p.R100C 0.46 tolerated(0.18) benign(0.067) TCGA-22-4594-01 16 4414384 4414384 G A CORO7 Missense_Mutation p.R390W 0.18 deleterious(0.01) benign(0.004) TCGA-22-4594-01 16 4732914 4732914 A C MGRN1 Silent p.A483A 0.15 TCGA-22-4594-01 16 48244907 48244907 C A ABCC11 Silent p.G520G 0.21 TCGA-22-4594-01 16 57449107 57449107 T C CCL17 Missense_Mutation p.I62T 0.22 deleterious(0) probably_damaging(0.988) TCGA-22-4594-01 16 67855045 67855045 T A TSNAXIP1 Missense_Mutation p.L48M 0.26 deleterious(0) probably_damaging(1) TCGA-22-4594-01 16 70975621 70975621 G T HYDIN Missense_Mutation p.S2257R 0.04 benign(0.056) TCGA-22-4594-01 16 89952292 89952292 A T TCF25 Missense_Mutation p.R156W 0.22 deleterious(0) possibly_damaging(0.812) TCGA-22-4594-01 17 10297585 10297585 A T MYH8 Missense_Mutation p.V1716D 0.17 deleterious(0) probably_damaging(0.949) TCGA-22-4594-01 17 10316035 10316035 C A MYH8 Missense_Mutation p.K386N 0.07 deleterious(0) probably_damaging(1) TCGA-22-4594-01 17 11671878 11671878 A T DNAH9 Nonsense_Mutation p.K2427* 0.11 TCGA-22-4594-01 17 18036608 18036608 G T MYO15A Missense_Mutation p.V1464L 0.26 unknown(0) TCGA-22-4594-01 17 21911591 21911591 A T RP11-744K17.9 RNA 0.36 TCGA-22-4594-01 17 29490288 29490288 C T NF1 Missense_Mutation p.R125C 0.12 tolerated(0.17) probably_damaging(0.988) TCGA-22-4594-01 17 30361941 30361941 C T LRRC37B Silent p.R663R 0.16 TCGA-22-4594-01 17 37187725 37187725 G T CTD-2206N4.2 5'Flank 0.14 TCGA-22-4594-01 17 42636099 42636099 T C FZD2 Missense_Mutation p.L348P 0.22 deleterious(0) probably_damaging(1) TCGA-22-4594-01 17 59763149 59763149 T C BRIP1 Intron 0.06 TCGA-22-4594-01 17 61684745 61684745 G A TACO1 Missense_Mutation p.R205H 0.06 deleterious(0.03) benign(0.052) TCGA-22-4594-01 17 64728864 64728864 A C PRKCA Missense_Mutation p.Q326P 0.08 tolerated(0.32) benign(0) TCGA-22-4594-01 17 67016700 67016700 G T ABCA9 Missense_Mutation p.T810N 0.20 tolerated(0.12) benign(0.002) TCGA-22-4594-01 17 7218278 7218278 C A GPS2 Nonsense_Mutation p.E32* 0.33 TCGA-22-4594-01 17 7577138 7577174 CGTCCCAGTAGATTACCACTACTCAGGATAGGAAAAG - TP53 Splice_Site p.X261_splice 0.41 TCGA-22-4594-01 17 76557846 76557846 G A DNAH17 Nonsense_Mutation p.Q596* 0.24 TCGA-22-4594-01 17 7918681 7918681 G A GUCY2D Silent p.S935S 0.48 TCGA-22-4594-01 17 79571638 79571638 G T NPLOC4 Missense_Mutation p.T257K 0.12 tolerated(0.07) possibly_damaging(0.591) TCGA-22-4594-01 17 80332605 80332605 C A UTS2R Missense_Mutation p.H135Q 0.36 deleterious(0) probably_damaging(1) TCGA-22-4594-01 18 13438381 13438381 A G LDLRAD4 Missense_Mutation p.N60S 0.10 tolerated(0.81) benign(0.001) TCGA-22-4594-01 18 13885451 13885451 G T MC2R Missense_Mutation p.R23S 0.14 tolerated(0.09) benign(0.001) TCGA-22-4594-01 18 28728595 28728595 T G DSC1 Missense_Mutation p.Y213S 0.08 deleterious(0.01) probably_damaging(1) TCGA-22-4594-01 18 29027871 29027871 G C DSG3 Missense_Mutation p.A11P 0.19 tolerated(0.28) benign(0.005) TCGA-22-4594-01 18 31320307 31320307 C A ASXL3 Missense_Mutation p.A980D 0.25 possibly_damaging(0.701) TCGA-22-4594-01 18 48442553 48442553 G A ME2 Silent p.S136S 0.03 TCGA-22-4594-01 18 59757713 59757713 T G PIGN Missense_Mutation p.Q760P 0.12 tolerated(0.31) benign(0.005) TCGA-22-4594-01 18 74563801 74563801 A T ZNF236 Missense_Mutation p.H88L 0.11 deleterious(0) probably_damaging(0.999) TCGA-22-4594-01 18 9221905 9221905 G T ANKRD12 Missense_Mutation p.G284V 0.24 deleterious(0) probably_damaging(1) TCGA-22-4594-01 19 10602624 10602625 GG C KEAP1 Frame_Shift_Del p.P318Rfs*10 0.37 TCGA-22-4594-01 19 17743624 17743624 G T UNC13A Missense_Mutation p.P1132H 0.36 deleterious(0) possibly_damaging(0.711) TCGA-22-4594-01 19 21607501 21607501 T G ZNF493 Silent p.T680T 0.16 TCGA-22-4594-01 19 38983262 38983262 A G RYR1 Missense_Mutation p.E2087G 0.40 benign(0.03) TCGA-22-4594-01 19 40718998 40718998 G T MAP3K10 Silent p.G580G 0.17 TCGA-22-4594-01 19 42222121 42222121 C A CEACAM5 Missense_Mutation p.H438N 0.33 tolerated(0.12) possibly_damaging(0.848) TCGA-22-4594-01 19 42819529 42819529 C T TMEM145 Silent p.L195L 0.09 TCGA-22-4594-01 19 49468699 49468699 G C FTL 5'UTR 0.07 TCGA-22-4594-01 19 49938431 49938431 G A SLC17A7 Missense_Mutation p.A143V 0.35 deleterious(0) benign(0.403) TCGA-22-4594-01 19 57286848 57286848 T A ZIM2 Missense_Mutation p.K264N 0.10 tolerated(0.15) benign(0.366) TCGA-22-4594-01 19 57641442 57641442 T A USP29 Missense_Mutation p.L467M 0.17 tolerated(0.15) benign(0.025) TCGA-22-4594-01 19 58118227 58118227 G A ZNF530 Missense_Mutation p.S445N 0.04 tolerated(0.06) benign(0.003) TCGA-22-4594-01 19 619711 619711 G A POLRMT Silent p.L981L 0.08 TCGA-22-4594-01 19 6312222 6312222 C A ACER1 Silent p.L96L 0.42 TCGA-22-4594-01 19 7913908 7913908 G C EVI5L Silent p.L143L 0.12 TCGA-22-4594-01 19 9297210 9297210 T A OR7D2 Missense_Mutation p.F251L 0.10 deleterious_low_confidence(0.01) benign(0.443) TCGA-22-4594-01 1 103412510 103412510 G T COL11A1 Silent p.G1057G 0.11 TCGA-22-4594-01 1 110740967 110740967 G - SLC6A17 Frame_Shift_Del p.G698Afs*83 0.28 TCGA-22-4594-01 1 11297996 11297996 C A MTOR Silent p.V704V 0.22 TCGA-22-4594-01 1 143767696 143767696 G T PPIAL4G Silent p.S51S 0.18 TCGA-22-4594-01 1 146661763 146661763 C A FMO5 Missense_Mutation p.D417Y 0.06 tolerated(0.07) benign(0.279) TCGA-22-4594-01 1 152080749 152080749 C T TCHH Silent p.E1648E 0.27 TCGA-22-4594-01 1 152326781 152326781 T C FLG2 Missense_Mutation p.S1161G 0.29 unknown(0) TCGA-22-4594-01 1 154033028 154033028 T C NUP210L Silent p.E946E 0.08 TCGA-22-4594-01 1 155264146 155264146 G T PKLR Silent p.G332G 0.24 TCGA-22-4594-01 1 156500029 156500029 T G IQGAP3 Silent p.S1424S 0.25 TCGA-22-4594-01 1 157771707 157771707 G T FCRL1 Missense_Mutation p.T295K 0.28 tolerated(0.05) benign(0.168) TCGA-22-4594-01 1 158590162 158590162 C A SPTA1 Missense_Mutation p.C2072F 0.27 deleterious(0) probably_damaging(1) TCGA-22-4594-01 1 158670014 158670014 C A OR6K2 Silent p.L143L 0.19 TCGA-22-4594-01 1 159032387 159032387 A T AIM2 3'UTR 0.20 TCGA-22-4594-01 1 159032388 159032388 G T AIM2 3'UTR 0.20 TCGA-22-4594-01 1 159284221 159284221 C T OR10J3 Missense_Mutation p.A77T 0.09 tolerated(0.1) benign(0.033) TCGA-22-4594-01 1 161201155 161201155 C A NR1I3 Missense_Mutation p.G220W 0.31 deleterious(0) probably_damaging(1) TCGA-22-4594-01 1 162725483 162725483 G C DDR2 Missense_Mutation p.G199R 0.16 deleterious(0) probably_damaging(1) TCGA-22-4594-01 1 167096546 167096546 G T DUSP27 Missense_Mutation p.W726C 0.33 deleterious(0) probably_damaging(0.999) TCGA-22-4594-01 1 16901003 16901003 C A NBPF1 Missense_Mutation p.D793Y 0.12 deleterious(0) probably_damaging(0.996) TCGA-22-4594-01 1 169676503 169676503 T C SELL Missense_Mutation p.Y200C 0.21 deleterious(0) probably_damaging(0.916) TCGA-22-4594-01 1 172538191 172538191 C A SUCO Missense_Mutation p.D255E 0.06 deleterious(0.01) benign(0.021) TCGA-22-4594-01 1 176679127 176679127 A T PAPPA2 Missense_Mutation p.S1156C 0.30 deleterious(0) probably_damaging(0.999) TCGA-22-4594-01 1 178834175 178834175 G T ANGPTL1 Missense_Mutation p.P246H 0.20 deleterious(0.03) possibly_damaging(0.634) TCGA-22-4594-01 1 179348592 179348592 G A AXDND1 Missense_Mutation p.V186I 0.20 deleterious(0) benign(0.417) TCGA-22-4594-01 1 182551216 182551216 C A RNASEL Missense_Mutation p.G582C 0.18 deleterious(0.01) possibly_damaging(0.838) TCGA-22-4594-01 1 185958639 185958639 C A HMCN1 Missense_Mutation p.T1023N 0.19 possibly_damaging(0.663) TCGA-22-4594-01 1 186024536 186024536 A G HMCN1 Missense_Mutation p.I2292V 0.25 benign(0.055) TCGA-22-4594-01 1 197112277 197112277 C A ASPM Missense_Mutation p.D369Y 0.29 deleterious(0) probably_damaging(0.969) TCGA-22-4594-01 1 197411184 197411184 G T CRB1 Intron 0.23 TCGA-22-4594-01 1 197447000 197447000 A T CRB1 Missense_Mutation p.R1404S 0.06 deleterious(0) possibly_damaging(0.728) TCGA-22-4594-01 1 198509729 198509729 C A ATP6V1G3 Missense_Mutation p.A18S 0.19 deleterious(0) probably_damaging(0.989) TCGA-22-4594-01 1 198509730 198509730 C G ATP6V1G3 Silent p.R17R 0.19 TCGA-22-4594-01 1 205039098 205039098 C A CNTN2 Silent p.P780P 0.19 TCGA-22-4594-01 1 207095315 207095315 C G FAIM3 5'UTR 0.11 TCGA-22-4594-01 1 210857398 210857398 G C KCNH1 Missense_Mutation p.P732R 0.14 deleterious(0.03) possibly_damaging(0.465) TCGA-22-4594-01 1 216219894 216219894 G T USH2A Silent p.P2068P 0.16 TCGA-22-4594-01 1 216246286 216246286 C A USH2A Silent p.S1934S 0.23 TCGA-22-4594-01 1 217604627 217604627 C A GPATCH2 Missense_Mutation p.G483W 0.05 deleterious(0) probably_damaging(1) TCGA-22-4594-01 1 220369676 220369676 T A RAB3GAP2 Silent p.A292A 0.04 TCGA-22-4594-01 1 222695822 222695822 G A HHIPL2 3'UTR 0.07 TCGA-22-4594-01 1 223178882 223178882 A T DISP1 Silent p.I1381I 0.03 TCGA-22-4594-01 1 226127456 226127456 C A LEFTY2 Missense_Mutation p.R166M 0.19 deleterious(0.01) probably_damaging(0.989) TCGA-22-4594-01 1 227076547 227076547 A G PSEN2 Missense_Mutation p.Y195C 0.21 deleterious(0) probably_damaging(0.999) TCGA-22-4594-01 1 228596090 228596090 T A TRIM17 Missense_Mutation p.S416C 0.19 deleterious(0.01) probably_damaging(0.93) TCGA-22-4594-01 1 230841781 230841781 C A AGT Missense_Mutation p.C341F 0.03 tolerated(0.62) benign(0.047) TCGA-22-4594-01 1 232577082 232577082 C A SIPA1L2 Silent p.L1199L 0.21 TCGA-22-4594-01 1 23419683 23419683 C T LUZP1 Missense_Mutation p.V358I 0.08 tolerated(0.13) benign(0.024) TCGA-22-4594-01 1 236341808 236341808 A T GPR137B Missense_Mutation p.R187W 0.04 deleterious(0.02) possibly_damaging(0.908) TCGA-22-4594-01 1 236766583 236766583 C T HEATR1 Missense_Mutation p.R79Q 0.06 deleterious(0) probably_damaging(0.999) TCGA-22-4594-01 1 237540714 237540714 C T RYR2 Silent p.S185S 0.10 TCGA-22-4594-01 1 237780593 237780593 T A RYR2 Missense_Mutation p.L1908Q 0.46 benign(0.024) TCGA-22-4594-01 1 240072343 240072343 G T CHRM3 Missense_Mutation p.W531L 0.09 deleterious(0) probably_damaging(0.998) TCGA-22-4594-01 1 24175141 24175141 T G FUCA1 Silent p.V386V 0.09 TCGA-22-4594-01 1 24419454 24419454 G A MYOM3 Missense_Mutation p.T358I 0.15 deleterious(0.01) possibly_damaging(0.493) TCGA-22-4594-01 1 247588728 247588728 G T NLRP3 Missense_Mutation p.M661I 0.39 deleterious(0.05) probably_damaging(0.989) TCGA-22-4594-01 1 248128999 248128999 T C OR2AK2 Silent p.L122L 0.06 TCGA-22-4594-01 1 248525764 248525764 C A OR2T4 Silent p.P294P 0.06 TCGA-22-4594-01 1 248637216 248637216 C A OR2T3 Missense_Mutation p.L189M 0.09 tolerated(0.14) probably_damaging(0.913) TCGA-22-4594-01 1 248814159 248814159 A T OR2T27 Nonsense_Mutation p.Y9* 0.10 TCGA-22-4594-01 1 29602184 29602184 C T PTPRU Missense_Mutation p.R457W 0.26 deleterious(0.01) possibly_damaging(0.884) TCGA-22-4594-01 1 32860013 32860013 C T BSDC1 Translation_Start_Site p.M1? 0.05 deleterious_low_confidence(0) benign(0.149) TCGA-22-4594-01 1 34180314 34180314 C T CSMD2 Silent p.L1053L 0.24 TCGA-22-4594-01 1 34190947 34190947 C G CSMD2 Intron 0.10 TCGA-22-4594-01 1 35476554 35476554 G A ZMYM6 Silent p.S382S 0.05 TCGA-22-4594-01 1 36186496 36186496 C A C1orf216 5'Flank 0.12 TCGA-22-4594-01 1 36186497 36186497 C A C1orf216 5'Flank 0.12 TCGA-22-4594-01 1 3764154 3764154 T C CEP104 Missense_Mutation p.E104G 0.28 deleterious(0) possibly_damaging(0.856) TCGA-22-4594-01 1 39775986 39775986 C - MACF1 Frame_Shift_Del p.L1001Cfs*32 0.11 TCGA-22-4594-01 1 40769236 40769236 C A COL9A2 Missense_Mutation p.G505V 0.36 deleterious(0) probably_damaging(0.999) TCGA-22-4594-01 1 40928857 40928857 T C ZFP69B Missense_Mutation p.F401L 0.03 tolerated(0.13) probably_damaging(0.982) TCGA-22-4594-01 1 43021841 43021841 A G CCDC30 Missense_Mutation p.E147G 0.05 tolerated(0.07) benign(0.394) TCGA-22-4594-01 1 44160503 44160503 C T KDM4A Missense_Mutation p.P870S 0.09 deleterious(0.01) probably_damaging(0.992) TCGA-22-4594-01 1 46597546 46597546 T A PIK3R3 Missense_Mutation p.I27L 0.07 tolerated_low_confidence(0.74) benign(0.073) TCGA-22-4594-01 1 53544086 53544086 C T PODN Missense_Mutation p.R350W 0.06 deleterious(0.01) probably_damaging(0.92) TCGA-22-4594-01 1 55521731 55521731 C T PCSK9 Silent p.L289L 0.20 TCGA-22-4594-01 1 57347154 57347154 G T C8A Silent p.V167V 0.18 TCGA-22-4594-01 1 60103903 60103903 C T FGGY Silent p.C359C 0.20 TCGA-22-4594-01 1 6046228 6046228 G C NPHP4 Missense_Mutation p.P41R 0.14 deleterious(0.03) possibly_damaging(0.77) TCGA-22-4594-01 1 62579927 62579927 G A INADL Intron 0.08 TCGA-22-4594-01 1 64698283 64698283 A G UBE2U Silent p.T182T 0.26 TCGA-22-4594-01 1 66081782 66081782 G A LEPR Missense_Mutation p.G696E 0.20 tolerated(0.18) benign(0.411) TCGA-22-4594-01 1 72163769 72163769 G T NEGR1 Missense_Mutation p.Q197K 0.23 deleterious(0.05) possibly_damaging(0.642) TCGA-22-4594-01 1 79356789 79356789 C T ELTD1 3'UTR 0.14 TCGA-22-4594-01 1 8390757 8390757 G A SLC45A1 Missense_Mutation p.V402I 0.10 tolerated(0.25) benign(0.002) TCGA-22-4594-01 20 13830130 13830130 C A SEL1L2 3'UTR 0.08 TCGA-22-4594-01 20 13846094 13846094 T C SEL1L2 Intron 0.14 TCGA-22-4594-01 20 1918000 1918000 T A SIRPA Missense_Mutation p.L434Q 0.14 deleterious(0) probably_damaging(0.979) TCGA-22-4594-01 20 2816010 2816010 A T PCED1A 3'UTR 0.14 TCGA-22-4594-01 20 31022939 31022939 T A ASXL1 Silent p.P808P 0.17 TCGA-22-4594-01 20 33590903 33590903 C T TRPC4AP 3'UTR 0.05 TCGA-22-4594-01 20 34262468 34262468 C G NFS1 Silent p.V340V 0.26 TCGA-22-4594-01 20 36640355 36640355 T C TTI1 Missense_Mutation p.S622G 0.18 deleterious(0.05) benign(0.037) TCGA-22-4594-01 20 422388 422388 G C TBC1D20 Intron 0.14 TCGA-22-4594-01 20 44520281 44520281 G A CTSA Missense_Mutation p.R43Q 0.33 tolerated(0.29) benign(0.005) TCGA-22-4594-01 20 44571869 44571869 C T PCIF1 Silent p.N269N 0.07 TCGA-22-4594-01 20 57768674 57768674 G T ZNF831 Missense_Mutation p.G867V 0.15 tolerated(0.06) possibly_damaging(0.865) TCGA-22-4594-01 20 58349385 58349385 G C PHACTR3 Missense_Mutation p.E338D 0.14 tolerated(0.25) benign(0.004) TCGA-22-4594-01 20 9496710 9496710 C A LAMP5 Missense_Mutation p.H101N 0.28 tolerated(0.97) benign(0.001) TCGA-22-4594-01 21 31744502 31744502 G A KRTAP13-2 Silent p.F10F 0.06 TCGA-22-4594-01 21 38878443 38878443 G C DYRK1A Missense_Mutation p.D530H 0.11 deleterious(0) possibly_damaging(0.753) TCGA-22-4594-01 21 43339009 43339009 C A C2CD2 Missense_Mutation p.V185L 0.09 tolerated(1) benign(0.006) TCGA-22-4594-01 21 46323305 46323305 G T ITGB2 Missense_Mutation p.N158K 0.18 tolerated(0.38) possibly_damaging(0.562) TCGA-22-4594-01 21 47532733 47532733 G C COL6A2 Missense_Mutation p.G244R 0.13 tolerated(0.42) possibly_damaging(0.58) TCGA-22-4594-01 22 17473038 17473038 C T GAB4 Missense_Mutation p.R68Q 0.20 deleterious(0.04) benign(0.002) TCGA-22-4594-01 22 18300514 18300514 G A MICAL3 Missense_Mutation p.A1638V 0.12 benign(0) TCGA-22-4594-01 22 36863953 36863953 C A TXN2 Silent p.V133V 0.20 TCGA-22-4594-01 22 46318941 46318941 G T WNT7B Missense_Mutation p.A282E 0.21 tolerated(1) benign(0.009) TCGA-22-4594-01 2 103281661 103281661 G T SLC9A2 Missense_Mutation p.V286L 0.21 tolerated(0.11) benign(0.111) TCGA-22-4594-01 2 109545757 109545757 G T EDAR Missense_Mutation p.Q85K 0.21 tolerated(0.43) probably_damaging(0.953) TCGA-22-4594-01 2 115200344 115200344 G T DPP10 5'UTR 0.16 TCGA-22-4594-01 2 125405440 125405440 G A CNTNAP5 Missense_Mutation p.S660N 0.15 tolerated(0.05) benign(0.012) TCGA-22-4594-01 2 136548250 136548250 A C LCT Silent p.T1771T 0.20 TCGA-22-4594-01 2 141283555 141283555 T C LRP1B Silent p.T2628T 0.12 TCGA-22-4594-01 2 153476121 153476121 G T FMNL2 Missense_Mutation p.G576C 0.25 probably_damaging(0.984) TCGA-22-4594-01 2 163134747 163134747 T C IFIH1 Missense_Mutation p.Y578C 0.28 deleterious(0) probably_damaging(1) TCGA-22-4594-01 2 167301376 167301376 C A SCN7A Missense_Mutation p.D508Y 0.09 deleterious(0) probably_damaging(1) TCGA-22-4594-01 2 168106901 168106901 C A XIRP2 Missense_Mutation p.A3000D 0.33 probably_damaging(0.964) TCGA-22-4594-01 2 175213139 175213139 C A CIR1 3'UTR 0.27 TCGA-22-4594-01 2 176959326 176959326 C A HOXD13 Missense_Mutation p.F300L 0.05 deleterious(0) probably_damaging(0.995) TCGA-22-4594-01 2 178096223 178096223 G C NFE2L2 Missense_Mutation p.L370V 0.22 tolerated(0.39) benign(0.004) TCGA-22-4594-01 2 178307201 178307201 A T AGPS Missense_Mutation p.D259V 0.29 deleterious(0) probably_damaging(1) TCGA-22-4594-01 2 179599183 179599183 A T TTN Nonsense_Mutation p.L5123* 0.32 TCGA-22-4594-01 2 186696592 186696592 C T FSIP2 Missense_Mutation p.S6946L 0.24 benign(0.197) TCGA-22-4594-01 2 197673966 197673966 G T C2orf66 Missense_Mutation p.P49Q 0.21 deleterious(0) probably_damaging(0.998) TCGA-22-4594-01 2 198950747 198950747 A T PLCL1 Missense_Mutation p.M836L 0.30 tolerated(1) benign(0) TCGA-22-4594-01 2 202027779 202027779 A G CFLAR Intron 0.12 TCGA-22-4594-01 2 202342852 202342852 G T STRADB Missense_Mutation p.G255W 0.24 deleterious(0) probably_damaging(1) TCGA-22-4594-01 2 215928787 215928787 A T ABCA12 Splice_Site p.X106_splice 0.20 TCGA-22-4594-01 2 228881955 228881955 G C SPHKAP Missense_Mutation p.D1205E 0.28 tolerated(1) benign(0.001) TCGA-22-4594-01 2 230668881 230668881 G A TRIP12 Silent p.L830L 0.27 TCGA-22-4594-01 2 231174651 231174651 G T SP140 Missense_Mutation p.D691Y 0.10 deleterious(0) probably_damaging(0.99) TCGA-22-4594-01 2 231176217 231176217 C G SP140 Missense_Mutation p.I804M 0.17 deleterious(0) probably_damaging(1) TCGA-22-4594-01 2 238258844 238258844 G T COL6A3 Silent p.P2275P 0.22 TCGA-22-4594-01 2 238283362 238283362 C G COL6A3 Silent p.A1124A 0.27 TCGA-22-4594-01 2 24413506 24413506 C T FAM228A 3'UTR 0.13 TCGA-22-4594-01 2 28812337 28812337 T A PLB1 Silent p.I612I 0.15 TCGA-22-4594-01 2 39065089 39065089 C T DHX57 Missense_Mutation p.G809E 0.12 tolerated(0.38) benign(0.299) TCGA-22-4594-01 2 40342754 40342754 T A SLC8A1 Missense_Mutation p.K854I 0.18 deleterious(0.03) probably_damaging(1) TCGA-22-4594-01 2 55539625 55539625 A T CCDC88A Missense_Mutation p.L1341M 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-22-4594-01 2 72360334 72360334 G T CYP26B1 Missense_Mutation p.L322M 0.20 tolerated(0.11) possibly_damaging(0.542) TCGA-22-4594-01 2 80530570 80530570 G T LRRTM1 Silent p.I125I 0.18 TCGA-22-4594-01 2 97217442 97217442 G T ARID5A Missense_Mutation p.A393S 0.19 tolerated(0.52) benign(0.262) TCGA-22-4594-01 3 113345011 113345011 C T SIDT1 Silent p.D790D 0.07 TCGA-22-4594-01 3 129130101 129130101 G A EFCAB12 Missense_Mutation p.T312M 0.42 tolerated(0.06) probably_damaging(0.939) TCGA-22-4594-01 3 141535803 141535803 G T GRK7 Nonsense_Mutation p.G525* 0.38 TCGA-22-4594-01 3 164906459 164906459 C A SLITRK3 Silent p.G720G 0.22 TCGA-22-4594-01 3 165503998 165503998 G A BCHE Missense_Mutation p.T540M 0.16 tolerated(0.13) probably_damaging(0.909) TCGA-22-4594-01 3 180372593 180372593 G T CCDC39 Missense_Mutation p.A296E 0.43 tolerated(1) benign(0) TCGA-22-4594-01 3 190936667 190936667 A G OSTN Silent p.T78T 0.11 TCGA-22-4594-01 3 196865101 196865101 C A DLG1 Missense_Mutation p.G325V 0.40 deleterious(0) probably_damaging(1) TCGA-22-4594-01 3 36897349 36897349 C A TRANK1 Missense_Mutation p.W1244C 0.24 tolerated(0.06) probably_damaging(0.928) TCGA-22-4594-01 3 4856158 4856158 C T ITPR1 Missense_Mutation p.T2523M 0.12 deleterious(0) probably_damaging(0.946) TCGA-22-4594-01 3 89480465 89480465 T C EPHA3 Missense_Mutation p.S768P 0.23 deleterious(0) probably_damaging(0.999) TCGA-22-4594-01 3 9032458 9032458 G A SRGAP3 Missense_Mutation p.P875L 0.46 tolerated(0.12) probably_damaging(0.998) TCGA-22-4594-01 4 113508616 113508616 A T C4orf21 Silent p.S1199S 0.32 TCGA-22-4594-01 4 159174731 159174731 G T TMEM144 3'UTR 0.23 TCGA-22-4594-01 4 162697065 162697065 T A FSTL5 Missense_Mutation p.S191C 0.35 deleterious(0.02) benign(0.293) TCGA-22-4594-01 4 187155168 187155168 C T KLKB1 Missense_Mutation p.A95V 0.26 tolerated(0.11) probably_damaging(0.913) TCGA-22-4594-01 4 62598837 62598837 C A LPHN3 Missense_Mutation p.P254T 0.32 deleterious(0) probably_damaging(1) TCGA-22-4594-01 4 69202896 69202896 C A YTHDC1 Missense_Mutation p.E244D 0.12 tolerated_low_confidence(0.43) unknown(0) TCGA-22-4594-01 4 69202897 69202897 T A YTHDC1 Missense_Mutation p.E244V 0.13 tolerated_low_confidence(0.09) unknown(0) TCGA-22-4594-01 4 88293963 88293963 G T HSD17B11 Missense_Mutation p.T152K 0.17 tolerated(0.17) possibly_damaging(0.751) TCGA-22-4594-01 4 90816402 90816402 G T MMRN1 Missense_Mutation p.G94C 0.39 tolerated_low_confidence(0.07) benign(0.376) TCGA-22-4594-01 5 118970359 118970359 G T FAM170A Nonsense_Mutation p.E306* 0.07 TCGA-22-4594-01 5 128863490 128863490 G A ADAMTS19 Missense_Mutation p.R373H 0.10 deleterious(0.04) probably_damaging(0.98) TCGA-22-4594-01 5 140516777 140516777 G T PCDHB5 Missense_Mutation p.K587N 0.20 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-22-4594-01 5 140516778 140516778 G T PCDHB5 Missense_Mutation p.V588L 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.651) TCGA-22-4594-01 5 140559063 140559063 C A PCDHB8 Missense_Mutation p.T483N 0.14 deleterious_low_confidence(0.01) benign(0.038) TCGA-22-4594-01 5 149449860 149449860 G T CSF1R Missense_Mutation p.P402T 0.29 deleterious(0) probably_damaging(1) TCGA-22-4594-01 5 168100188 168100188 G C SLIT3 Missense_Mutation p.L1279V 0.14 tolerated(1) benign(0.071) TCGA-22-4594-01 5 169412915 169412915 G A DOCK2 Missense_Mutation p.M994I 0.05 deleterious(0.01) possibly_damaging(0.573) TCGA-22-4594-01 5 170720944 170720944 G C RANBP17 Missense_Mutation p.V1001L 0.06 tolerated(0.46) benign(0.235) TCGA-22-4594-01 5 178408712 178408712 G A GRM6 Silent p.A860A 0.19 TCGA-22-4594-01 5 179227241 179227241 G T MGAT4B Missense_Mutation p.N261K 0.07 deleterious(0) probably_damaging(0.934) TCGA-22-4594-01 5 39201961 39201961 G C FYB Missense_Mutation p.L378V 0.08 deleterious(0) probably_damaging(0.996) TCGA-22-4594-01 5 52370221 52370221 G T ITGA2 Missense_Mutation p.G860W 0.17 deleterious(0) probably_damaging(0.999) TCGA-22-4594-01 5 665269 665269 G A TPPP Missense_Mutation p.S203F 0.12 deleterious(0.04) possibly_damaging(0.84) TCGA-22-4594-01 5 77335099 77335099 C A AP3B1 Splice_Site p.X860_splice 0.10 TCGA-22-4594-01 5 82937228 82937228 G T HAPLN1 3'UTR 0.25 TCGA-22-4594-01 5 89979910 89979910 A G GPR98 Missense_Mutation p.I2058V 0.15 possibly_damaging(0.768) TCGA-22-4594-01 5 9380101 9380101 C A SEMA5A 5'UTR 0.08 TCGA-22-4594-01 6 105781204 105781204 C A PREP Nonsense_Mutation p.E334* 0.12 TCGA-22-4594-01 6 112015703 112015703 C A FYN Missense_Mutation p.R383L 0.25 tolerated(0.08) probably_damaging(0.996) TCGA-22-4594-01 6 123377162 123377162 C G CLVS2 Missense_Mutation p.S296C 0.31 tolerated(0.1) benign(0.001) TCGA-22-4594-01 6 127469871 127469871 C A RSPO3 Missense_Mutation p.P59H 0.13 deleterious(0) probably_damaging(1) TCGA-22-4594-01 6 158923464 158923464 C T TULP4 Silent p.A923A 0.10 TCGA-22-4594-01 6 160240056 160240056 G C PNLDC1 Missense_Mutation p.E435Q 0.06 deleterious(0.03) possibly_damaging(0.857) TCGA-22-4594-01 6 161087345 161087345 C A LPA 5'UTR 0.17 TCGA-22-4594-01 6 170594203 170594203 G T DLL1 Silent p.S351S 0.22 TCGA-22-4594-01 6 170594204 170594204 G T DLL1 Missense_Mutation p.S351Y 0.22 deleterious(0.05) possibly_damaging(0.707) TCGA-22-4594-01 6 17800308 17800308 T C KIF13A Missense_Mutation p.T831A 0.05 tolerated(0.33) benign(0.311) TCGA-22-4594-01 6 24462988 24462988 G T GPLD1 Missense_Mutation p.A286E 0.11 tolerated(1) benign(0.393) TCGA-22-4594-01 6 25972149 25972149 A G TRIM38 Missense_Mutation p.Q187R 0.08 tolerated(0.27) benign(0.008) TCGA-22-4594-01 6 29408357 29408357 G T OR10C1 Nonsense_Mutation p.G189* 0.30 TCGA-22-4594-01 6 30303632 30303632 G T TRIM39 Missense_Mutation p.Q220H 0.21 deleterious(0.02) possibly_damaging(0.781) TCGA-22-4594-01 6 32096728 32096728 C A FKBPL Missense_Mutation p.R277L 0.17 deleterious(0.01) probably_damaging(0.991) TCGA-22-4594-01 6 33639904 33639904 G T ITPR3 Missense_Mutation p.A943S 0.10 tolerated(0.53) benign(0.002) TCGA-22-4594-01 6 39869208 39869208 G A DAAM2 Missense_Mutation p.R981K 0.07 tolerated(0.39) benign(0.001) TCGA-22-4594-01 6 40399582 40399582 C A LRFN2 Missense_Mutation p.R424L 0.29 deleterious(0) possibly_damaging(0.657) TCGA-22-4594-01 6 40400871 40400871 C G LRFN2 Splice_Site 0.28 TCGA-22-4594-01 6 47682861 47682861 A T GPR115 Missense_Mutation p.E627V 0.06 deleterious(0.01) possibly_damaging(0.832) TCGA-22-4594-01 6 56846630 56846630 G C BEND6 Missense_Mutation p.D8H 0.33 deleterious_low_confidence(0) benign(0.125) TCGA-22-4594-01 6 7378889 7378889 A G CAGE1 Silent p.S216S 0.07 TCGA-22-4594-01 6 90340208 90340208 C A ANKRD6 Missense_Mutation p.P557T 0.15 tolerated(0.58) benign(0.004) TCGA-22-4594-01 6 97711290 97711290 C G MMS22L Missense_Mutation p.C288S 0.04 tolerated(0.28) benign(0.173) TCGA-22-4594-01 7 101063275 101063275 C T COL26A1 Missense_Mutation p.T59I 0.33 deleterious(0) probably_damaging(0.949) TCGA-22-4594-01 7 103050909 103050909 G T SLC26A5 Missense_Mutation p.H220N 0.10 deleterious(0) benign(0.003) TCGA-22-4594-01 7 120595643 120595643 G T ING3 Nonsense_Mutation p.E78* 0.16 TCGA-22-4594-01 7 139229098 139229098 G T CLEC2L 3'UTR 0.30 TCGA-22-4594-01 7 142561968 142561968 A G EPHB6 Missense_Mutation p.E137G 0.35 tolerated(0.35) benign(0.006) TCGA-22-4594-01 7 142723545 142723545 C A OR9A2 Silent p.P225P 0.37 TCGA-22-4594-01 7 143000894 143000894 G T CASP2 Missense_Mutation p.V329F 0.13 deleterious(0) probably_damaging(0.999) TCGA-22-4594-01 7 147675027 147675027 C A CNTNAP2 Missense_Mutation p.R777S 0.20 deleterious(0) probably_damaging(0.937) TCGA-22-4594-01 7 150937525 150937525 G C SMARCD3 Missense_Mutation p.I341M 0.07 deleterious(0) probably_damaging(0.989) TCGA-22-4594-01 7 38534093 38534093 C A AMPH Silent p.S80S 0.26 TCGA-22-4594-01 7 44080729 44080729 C A DBNL 5'Flank 0.36 TCGA-22-4594-01 7 44571357 44571357 G T NPC1L1 Silent p.P878P 0.26 TCGA-22-4594-01 7 49842372 49842372 T A VWC2 Nonsense_Mutation p.C254* 0.23 TCGA-22-4594-01 7 57187723 57187723 A T ZNF479 Missense_Mutation p.C467S 0.12 deleterious(0) possibly_damaging(0.67) TCGA-22-4594-01 7 6026846 6026846 C G PMS2 Missense_Mutation p.S517T 0.28 tolerated(0.19) benign(0.02) TCGA-22-4594-01 7 76828930 76828930 G A FGL2 Silent p.L61L 0.15 TCGA-22-4594-01 7 82785710 82785710 T C PCLO Splice_Site p.X83_splice 0.21 TCGA-22-4594-01 7 88965427 88965427 G T ZNF804B Missense_Mutation p.R1044M 0.38 tolerated(0.08) benign(0.001) TCGA-22-4594-01 7 95157662 95157662 C A ASB4 Intron 0.33 TCGA-22-4594-01 8 10467135 10467135 C A RP1L1 Silent p.T1491T 0.13 TCGA-22-4594-01 8 113299437 113299437 C A CSMD3 Missense_Mutation p.G3063C 0.20 deleterious(0.01) benign(0.163) TCGA-22-4594-01 8 120429032 120429032 G A NOV Missense_Mutation p.A45T 0.15 tolerated(0.42) benign(0.003) TCGA-22-4594-01 8 133153458 133153458 T C KCNQ3 Silent p.P461P 0.41 TCGA-22-4594-01 8 141461050 141461050 G T TRAPPC9 Nonsense_Mutation p.C239* 0.05 TCGA-22-4594-01 8 143960546 143960546 C G CYP11B1 Missense_Mutation p.K99N 0.19 deleterious(0.02) benign(0.297) TCGA-22-4594-01 8 2020550 2020550 C A MYOM2 Missense_Mutation p.L307M 0.19 deleterious(0) probably_damaging(0.918) TCGA-22-4594-01 8 23301432 23301432 C G ENTPD4 Missense_Mutation p.D200H 0.05 deleterious(0.01) probably_damaging(1) TCGA-22-4594-01 8 24774590 24774590 G A NEFM Missense_Mutation p.E408K 0.17 deleterious(0) unknown(0) TCGA-22-4594-01 8 27887924 27887924 G T NUGGC Silent p.I640I 0.33 TCGA-22-4594-01 8 30703743 30703743 G C TEX15 Missense_Mutation p.P931A 0.20 tolerated(0.19) benign(0.002) TCGA-22-4594-01 8 35541188 35541188 A T UNC5D Missense_Mutation p.M232L 0.31 tolerated(0.27) benign(0.002) TCGA-22-4594-01 8 36664939 36664939 C G KCNU1 Missense_Mutation p.I209M 0.16 deleterious(0) probably_damaging(1) TCGA-22-4594-01 8 37967949 37967949 C T ASH2L Missense_Mutation p.H152Y 0.16 tolerated(1) possibly_damaging(0.521) TCGA-22-4594-01 8 41798581 41798581 G A KAT6A Missense_Mutation p.L940F 0.07 benign(0.005) TCGA-22-4594-01 8 61655358 61655358 A T CHD7 Missense_Mutation p.Q456L 0.20 benign(0) TCGA-22-4594-01 8 68150967 68150967 T A ARFGEF1 Intron 0.22 TCGA-22-4594-01 8 72946051 72946051 C A TRPA1 Missense_Mutation p.S899I 0.21 deleterious(0.01) possibly_damaging(0.702) TCGA-22-4594-01 8 74722792 74722792 G T UBE2W Missense_Mutation p.L135I 0.06 deleterious(0) probably_damaging(0.994) TCGA-22-4594-01 8 81577315 81577315 C T ZNF704 Missense_Mutation p.R221H 0.05 tolerated(0.08) benign(0.116) TCGA-22-4594-01 8 92407365 92407365 G T SLC26A7 3'Flank 0.20 TCGA-22-4594-01 9 118162697 118162697 G T DEC1 Missense_Mutation p.V25L 0.34 tolerated_low_confidence(0.15) benign(0.004) TCGA-22-4594-01 9 130476284 130476284 T C PTRH1 3'UTR 0.16 TCGA-22-4594-01 9 131083968 131083968 G A TRUB2 Missense_Mutation p.R51C 0.09 deleterious(0.04) benign(0.082) TCGA-22-4594-01 9 137591878 137591878 G A COL5A1 Missense_Mutation p.R134H 0.07 probably_damaging(0.998) TCGA-22-4594-01 9 137809708 137809708 T A FCN1 Missense_Mutation p.S4C 0.07 deleterious_low_confidence(0.03) possibly_damaging(0.512) TCGA-22-4594-01 9 2110347 2110347 G T SMARCA2 Missense_Mutation p.G1129V 0.37 probably_damaging(0.988) TCGA-22-4594-01 9 77300395 77300395 C A RORB Missense_Mutation p.P414Q 0.05 deleterious(0) possibly_damaging(0.489) TCGA-22-4594-01 9 77455123 77455123 C A TRPM6 Missense_Mutation p.D121Y 0.30 deleterious(0) probably_damaging(0.954) TCGA-22-4594-01 9 77632204 77632204 T A C9orf41 Missense_Mutation p.I131L 0.31 tolerated(0.46) benign(0.001) TCGA-22-4594-01 X 100505997 100505997 G C DRP2 Missense_Mutation p.R597P 0.22 deleterious(0) probably_damaging(1) TCGA-22-4594-01 X 109695831 109695831 C A RGAG1 Silent p.A662A 0.20 TCGA-22-4594-01 X 110574147 110574147 C A DCX Missense_Mutation p.A392S 0.23 tolerated(0.2) benign(0.101) TCGA-22-4594-01 X 110653416 110653416 C - DCX Frame_Shift_Del p.A152Lfs*17 0.16 TCGA-22-4594-01 X 114242498 114242498 C T IL13RA2 Missense_Mutation p.E332K 0.09 tolerated(0.89) benign(0.001) TCGA-22-4594-01 X 117900829 117900829 C T IL13RA1 Missense_Mutation p.P300L 0.10 deleterious(0.05) benign(0.182) TCGA-22-4594-01 X 118370384 118370384 G T PGRMC1 Missense_Mutation p.G20W 0.31 deleterious(0) probably_damaging(0.999) TCGA-22-4594-01 X 12906633 12906633 G C TLR7 Missense_Mutation p.Q1002H 0.20 deleterious(0) possibly_damaging(0.905) TCGA-22-4594-01 X 135630984 135630984 C T VGLL1 Missense_Mutation p.P151S 0.26 tolerated(0.56) benign(0.064) TCGA-22-4594-01 X 135958671 135958671 C A RBMX Nonsense_Mutation p.G178* 0.10 TCGA-22-4594-01 X 144906099 144906099 G T SLITRK2 Missense_Mutation p.S719I 0.20 deleterious(0.02) possibly_damaging(0.703) TCGA-22-4594-01 X 147063080 147063080 C A FMR1NB Missense_Mutation p.P53H 0.24 deleterious(0) probably_damaging(0.95) TCGA-22-4594-01 X 148049159 148049159 G T AFF2 Silent p.S1068S 0.22 TCGA-22-4594-01 X 152991214 152991214 C T ABCD1 Missense_Mutation p.R165C 0.24 deleterious(0) probably_damaging(0.999) TCGA-22-4594-01 X 153033007 153033007 G T PLXNB3 Missense_Mutation p.R265L 0.14 tolerated(0.32) benign(0.165) TCGA-22-4594-01 X 153184442 153184442 G T ARHGAP4 Missense_Mutation p.S332R 0.08 tolerated(0.36) benign(0.027) TCGA-22-4594-01 X 153282085 153282085 G T IRAK1 Missense_Mutation p.L347I 0.06 deleterious(0) probably_damaging(0.999) TCGA-22-4594-01 X 153714259 153714259 T A UBL4A Nonsense_Mutation p.K72* 0.20 TCGA-22-4594-01 X 153881644 153881644 C A CTAG2 Missense_Mutation p.G49V 0.24 deleterious_low_confidence(0.01) unknown(0) TCGA-22-4594-01 X 155004514 155004514 C G SPRY3 3'UTR 0.10 TCGA-22-4594-01 X 3228498 3228498 G A MXRA5 Silent p.T2582T 0.30 TCGA-22-4594-01 X 32563331 32563331 G T DMD Missense_Mutation p.P705T 0.15 probably_damaging(0.954) TCGA-22-4594-01 X 34148633 34148633 G T FAM47A Missense_Mutation p.T588K 0.17 tolerated(0.24) possibly_damaging(0.634) TCGA-22-4594-01 X 54777693 54777693 G T ITIH6 Missense_Mutation p.T1158N 0.08 tolerated(0.21) benign(0.032) TCGA-22-4594-01 X 5811242 5811242 G A NLGN4X Silent p.N689N 0.20 TCGA-22-4594-01 X 68749674 68749674 C A FAM155B Silent p.R432R 0.08 TCGA-22-4594-01 X 70389769 70389769 C T NLGN3 Missense_Mutation p.P790L 0.09 deleterious_low_confidence(0) benign(0.008) TCGA-22-4594-01 X 70781679 70781679 C A OGT Missense_Mutation p.L636I 0.15 deleterious(0) probably_damaging(0.968) TCGA-22-4594-01 X 73524646 73524646 G A ZCCHC13 3'UTR 0.36 TCGA-22-4594-01 X 76709698 76709698 G C FGF16 Missense_Mutation p.V18L 0.16 benign(0.111) TCGA-22-4594-01 X 77913237 77913237 G T ZCCHC5 Silent p.A227A 0.27 TCGA-22-4594-01 X 79943578 79943578 G C BRWD3 Missense_Mutation p.S1285C 0.06 deleterious(0.01) probably_damaging(0.94) TCGA-22-4594-01 X 83357149 83357149 C A RPS6KA6 Missense_Mutation p.A558S 0.08 tolerated(0.17) benign(0.176) TCGA-22-4594-01 X 84362977 84362977 G T SATL1 Missense_Mutation p.P333Q 0.28 tolerated(1) benign(0.09) TCGA-22-4595-01 10 11963195 11963195 C A UPF2 3'UTR 0.35 TCGA-22-4595-01 10 1245948 1245948 G A ADARB2 Nonsense_Mutation p.Q608* 0.53 TCGA-22-4595-01 10 135370274 135370274 A T SYCE1 Missense_Mutation p.W173R 0.32 deleterious(0) probably_damaging(0.951) TCGA-22-4595-01 10 28970226 28970226 C A BAMBI Missense_Mutation p.A39D 0.28 deleterious(0.01) probably_damaging(0.957) TCGA-22-4595-01 10 29769381 29769381 G C SVIL Intron 0.34 TCGA-22-4595-01 10 30918610 30918610 G C LYZL2 Missense_Mutation p.L9V 0.23 deleterious_low_confidence(0) benign(0) TCGA-22-4595-01 10 30918611 30918611 G A LYZL2 Silent p.C8C 0.24 TCGA-22-4595-01 10 35437385 35437385 A T CREM Missense_Mutation p.Q45L 0.29 deleterious(0.02) benign(0.197) TCGA-22-4595-01 10 38241502 38241502 G C ZNF25 Missense_Mutation p.H308Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-22-4595-01 10 44871476 44871476 G T CXCL12 3'Flank 0.24 TCGA-22-4595-01 10 49440322 49440322 C A FRMPD2 Missense_Mutation p.G335V 0.29 deleterious(0) benign(0.263) TCGA-22-4595-01 10 70446445 70446445 T G TET1 Silent p.P1795P 0.30 TCGA-22-4595-01 10 72462179 72462179 G A ADAMTS14 Missense_Mutation p.V212I 0.35 tolerated(0.58) benign(0.002) TCGA-22-4595-01 10 75854156 75854156 G C VCL Missense_Mutation p.E494Q 0.33 tolerated(0.32) probably_damaging(0.982) TCGA-22-4595-01 10 8115758 8115758 G A GATA3 Missense_Mutation p.M369I 0.38 tolerated(0.07) benign(0.034) TCGA-22-4595-01 10 85997240 85997240 G T LRIT1 Missense_Mutation p.L109M 0.29 deleterious(0) probably_damaging(0.997) TCGA-22-4595-01 11 101362427 101362427 C A TRPC6 Missense_Mutation p.V330F 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-22-4595-01 11 104819395 104819395 C A CASP4 Missense_Mutation p.G264W 0.11 deleterious(0) probably_damaging(1) TCGA-22-4595-01 11 108382569 108382569 C A EXPH5 Missense_Mutation p.R1222L 0.18 deleterious(0.01) benign(0.072) TCGA-22-4595-01 11 1088727 1088727 G T MUC2 Missense_Mutation p.R1171M 0.30 probably_damaging(0.922) TCGA-22-4595-01 11 113661278 113661278 C A ATF4P4 RNA 0.22 TCGA-22-4595-01 11 114453140 114453140 C A NXPE4 Missense_Mutation p.D234Y 0.25 tolerated(0.12) probably_damaging(0.989) TCGA-22-4595-01 11 117860271 117860271 G T IL10RA Silent p.R101R 0.29 TCGA-22-4595-01 11 119004999 119004999 G C HINFP Missense_Mutation p.E449Q 0.25 tolerated(0.51) benign(0.009) TCGA-22-4595-01 11 119060970 119060970 C G CCDC153 3'UTR 0.19 TCGA-22-4595-01 11 20657899 20657899 G T SLC6A5 Silent p.L557L 0.21 TCGA-22-4595-01 11 2444157 2444157 C G TRPM5 Missense_Mutation p.R37P 0.27 tolerated(0.37) probably_damaging(0.922) TCGA-22-4595-01 11 44074600 44074600 G C ACCSL Silent p.L310L 0.21 TCGA-22-4595-01 11 46394213 46394213 G A DGKZ Missense_Mutation p.G541R 0.19 deleterious(0) probably_damaging(1) TCGA-22-4595-01 11 5068057 5068057 C A OR52J3 Missense_Mutation p.A101D 0.31 deleterious(0) possibly_damaging(0.675) TCGA-22-4595-01 11 5068180 5068180 T A OR52J3 Missense_Mutation p.V142E 0.34 deleterious(0) possibly_damaging(0.9) TCGA-22-4595-01 11 55595086 55595086 T C OR5L2 Missense_Mutation p.L131P 0.26 deleterious(0) probably_damaging(0.999) TCGA-22-4595-01 11 56143295 56143295 C A OR8U1 Missense_Mutation p.L66I 0.15 deleterious(0) possibly_damaging(0.895) TCGA-22-4595-01 11 56309989 56309989 G - OR5M11 Frame_Shift_Del p.L249Cfs*11 0.24 TCGA-22-4595-01 11 57995960 57995960 T C OR10Q1 Missense_Mutation p.I130V 0.18 deleterious(0.01) benign(0.071) TCGA-22-4595-01 11 58207164 58207164 G T OR5B12 Missense_Mutation p.A154E 0.19 deleterious_low_confidence(0) possibly_damaging(0.798) TCGA-22-4595-01 11 60165446 60165446 C A MS4A14 Missense_Mutation p.A87E 0.23 deleterious(0) probably_damaging(0.993) TCGA-22-4595-01 11 60665318 60665318 C T PRPF19 Missense_Mutation p.E473K 0.19 deleterious(0.02) benign(0.009) TCGA-22-4595-01 11 63230995 63230995 G T HRASLS5 Missense_Mutation p.P274T 0.22 deleterious(0.01) probably_damaging(0.952) TCGA-22-4595-01 11 63996966 63996966 G C NUDT22 Missense_Mutation p.E232Q 0.23 deleterious(0.02) possibly_damaging(0.729) TCGA-22-4595-01 11 64875684 64875684 C T VPS51 Silent p.G247G 0.44 TCGA-22-4595-01 11 66082942 66082942 G A CD248 Silent p.T519T 0.28 TCGA-22-4595-01 11 71146456 71146456 C A DHCR7 Missense_Mutation p.A465S 0.24 tolerated(0.5) benign(0.44) TCGA-22-4595-01 11 8707051 8707051 C G RPL27A Intron 0.30 TCGA-22-4595-01 11 92590384 92590384 A T FAT3 Silent p.G3790G 0.23 TCGA-22-4595-01 11 92600220 92600220 T C FAT3 Missense_Mutation p.L3991P 0.33 probably_damaging(0.997) TCGA-22-4595-01 11 92881520 92881520 C A SLC36A4 3'UTR 0.26 TCGA-22-4595-01 12 11174603 11174603 G C TAS2R19 Missense_Mutation p.L190V 0.16 tolerated(0.33) benign(0.05) TCGA-22-4595-01 12 119419808 119419808 C A SRRM4 Missense_Mutation p.P41T 0.31 tolerated_low_confidence(0.11) unknown(0) TCGA-22-4595-01 12 14613884 14613884 G C ATF7IP Missense_Mutation p.V872L 0.27 tolerated_low_confidence(0.07) unknown(0) TCGA-22-4595-01 12 21446895 21446895 C T SLCO1A2 Missense_Mutation p.G474E 0.14 deleterious(0) probably_damaging(1) TCGA-22-4595-01 12 21968726 21968726 C A ABCC9 Missense_Mutation p.V1332F 0.16 deleterious(0) probably_damaging(0.94) TCGA-22-4595-01 12 34175630 34175630 A T ALG10 Silent p.R32R 0.19 TCGA-22-4595-01 12 40037702 40037702 G - C12orf40 Frame_Shift_Del p.C62Sfs*9 0.23 TCGA-22-4595-01 12 51847358 51847358 G A SLC4A8 Missense_Mutation p.G150E 0.30 deleterious(0) probably_damaging(1) TCGA-22-4595-01 12 52156414 52156414 G C SCN8A Missense_Mutation p.S833T 0.27 deleterious(0.02) benign(0.063) TCGA-22-4595-01 12 57485758 57485758 G T NAB2 Missense_Mutation p.G312C 0.30 deleterious(0) probably_damaging(1) TCGA-22-4595-01 12 6788168 6788168 G T ZNF384 Missense_Mutation p.S83Y 0.13 tolerated(0.39) possibly_damaging(0.845) TCGA-22-4595-01 12 6788212 6788212 G T ZNF384 Missense_Mutation p.D68E 0.13 tolerated(0.44) benign(0.085) TCGA-22-4595-01 12 7882298 7882298 C A CLEC4C Missense_Mutation p.R179L 0.15 deleterious(0.03) possibly_damaging(0.885) TCGA-22-4595-01 12 8082408 8082408 C T SLC2A3 Missense_Mutation p.E245K 0.20 deleterious(0.02) possibly_damaging(0.558) TCGA-22-4595-01 12 8629921 8629922 GG C CLEC6A Frame_Shift_Del p.W164Sfs*3 0.23 TCGA-22-4595-01 12 8692491 8692491 G A CLEC4E Silent p.P30P 0.32 TCGA-22-4595-01 12 9304822 9304822 T C PZP Silent p.V1402V 0.20 TCGA-22-4595-01 12 994800 994800 G T WNK1 Silent p.V1610V 0.37 TCGA-22-4595-01 13 25363490 25363490 T A RNF17 Missense_Mutation p.I263N 0.30 deleterious(0) probably_damaging(0.948) TCGA-22-4595-01 13 32907110 32907110 C T BRCA2 Nonsense_Mutation p.Q499* 0.31 TCGA-22-4595-01 13 37269404 37269404 C T SERTM1 Silent p.L63L 0.29 TCGA-22-4595-01 13 47262104 47262104 G T LRCH1 Missense_Mutation p.V314L 0.37 tolerated(1) benign(0.267) TCGA-22-4595-01 13 58207715 58207715 C A PCDH17 Missense_Mutation p.N345K 0.36 deleterious(0) probably_damaging(0.999) TCGA-22-4595-01 14 103802424 103802424 G A EIF5 Missense_Mutation p.V42I 0.13 tolerated(0.55) benign(0.056) TCGA-22-4595-01 14 105406083 105406083 G A AHNAK2 Silent p.F5235F 0.18 TCGA-22-4595-01 14 106691831 106691831 C T IGHV3-21 Missense_Mutation p.E65K 0.19 deleterious_low_confidence(0.01) benign(0.414) TCGA-22-4595-01 14 106691978 106691978 C G IGHV3-21 Splice_Site p.X16_splice 0.18 TCGA-22-4595-01 14 107078546 107078546 G T IGHV1-58 Missense_Mutation p.R60S 0.17 benign(0.004) TCGA-22-4595-01 14 19563559 19563559 A T POTEG Intron 0.08 TCGA-22-4595-01 14 20345323 20345323 G T OR4K2 Missense_Mutation p.R299S 0.09 tolerated(0.17) benign(0.06) TCGA-22-4595-01 14 20389653 20389653 T A OR4K5 Silent p.A296A 0.10 TCGA-22-4595-01 14 21424410 21424410 C G RNASE2 Missense_Mutation p.I160M 0.24 deleterious(0) possibly_damaging(0.559) TCGA-22-4595-01 14 21623614 21623614 C A OR5AU1 Missense_Mutation p.V191F 0.21 deleterious(0.04) possibly_damaging(0.647) TCGA-22-4595-01 14 21623615 21623615 C A OR5AU1 Missense_Mutation p.E190D 0.19 tolerated(0.07) benign(0.096) TCGA-22-4595-01 14 22102181 22102181 A G OR10G2 Missense_Mutation p.L273P 0.19 deleterious(0.02) probably_damaging(0.98) TCGA-22-4595-01 14 45403624 45403624 C G KLHL28 Missense_Mutation p.G346A 0.22 tolerated(0.06) possibly_damaging(0.856) TCGA-22-4595-01 14 50295371 50295371 C T NEMF Missense_Mutation p.V463I 0.13 tolerated(0.63) possibly_damaging(0.557) TCGA-22-4595-01 14 63174853 63174853 A G KCNH5 Silent p.D780D 0.32 TCGA-22-4595-01 14 77746415 77746415 G A POMT2 Silent p.R578R 0.41 TCGA-22-4595-01 14 77894748 77894748 C G VIPAS39 Missense_Mutation p.E476Q 0.51 tolerated(0.13) possibly_damaging(0.491) TCGA-22-4595-01 14 77915633 77915633 C T VIPAS39 Intron 0.43 TCGA-22-4595-01 15 40861942 40861942 G C RPUSD2 Missense_Mutation p.E136Q 0.48 tolerated(0.08) probably_damaging(0.992) TCGA-22-4595-01 15 41279304 41279304 C T INO80 Missense_Mutation p.E1273K 0.32 deleterious(0) probably_damaging(0.98) TCGA-22-4595-01 15 42742495 42742495 T A ZNF106 Nonsense_Mutation p.R636* 0.30 TCGA-22-4595-01 15 43314927 43314927 T C UBR1 Missense_Mutation p.T938A 0.28 tolerated(0.06) benign(0.003) TCGA-22-4595-01 15 45003747 45003747 G A B2M Translation_Start_Site p.M1? 0.32 deleterious(0) possibly_damaging(0.775) TCGA-22-4595-01 15 56385892 56385912 TCTAATTGTTGCTCTCCAATT - RFX7 In_Frame_Del p.E1338_L1344del 0.36 TCGA-22-4595-01 15 71211506 71211506 T C LRRC49 Silent p.L234L 0.26 TCGA-22-4595-01 15 71952965 71952965 G C THSD4 Missense_Mutation p.V417L 0.24 tolerated(0.33) benign(0.446) TCGA-22-4595-01 15 99672069 99672069 C T SYNM Silent p.S1167S 0.04 TCGA-22-4595-01 16 20471458 20471458 C G ACSM2A Missense_Mutation p.Q8E 0.23 tolerated(0.09) benign(0.004) TCGA-22-4595-01 16 21108759 21108759 G T DNAH3 Missense_Mutation p.A861D 0.29 tolerated(0.33) benign(0.009) TCGA-22-4595-01 16 240027 240027 C T LUC7L Missense_Mutation p.R305H 0.38 deleterious_low_confidence(0.01) unknown(0) TCGA-22-4595-01 16 3807795 3807814 AACTTAAAACTGTACCTTGC - CREBBP Splice_Site p.X1202_splice 0.44 TCGA-22-4595-01 16 53504378 53504378 A T RBL2 Missense_Mutation p.I777F 0.34 tolerated(0.73) benign(0.007) TCGA-22-4595-01 16 71482504 71482587 GGTTTCTCCCCAGTGTGAATTCTCTGATGCCGCATTAGTTTCCCATTAACGCTGAAGGCCTTTCCACACTCATTACACTCATAG - ZNF23 In_Frame_Del p.Y448_P475del 0.17 TCGA-22-4595-01 16 71482585 71482585 T A ZNF23 Missense_Mutation p.Y448F 0.11 tolerated(0.26) benign(0.203) TCGA-22-4595-01 16 71482587 71482587 G A ZNF23 Silent p.P447P 0.11 TCGA-22-4595-01 16 74712798 74712798 T C MLKL Missense_Mutation p.K346R 0.28 deleterious(0.01) probably_damaging(0.992) TCGA-22-4595-01 16 75512582 75512582 C T CHST6 Missense_Mutation p.G382D 0.36 tolerated(0.34) benign(0.013) TCGA-22-4595-01 17 11784586 11784586 C A DNAH9 Missense_Mutation p.H3554Q 0.21 benign(0.032) TCGA-22-4595-01 17 15234796 15234796 C A TEKT3 Missense_Mutation p.R36L 0.32 tolerated(0.62) benign(0.049) TCGA-22-4595-01 17 16068452 16068452 A G NCOR1 Silent p.H153H 0.07 TCGA-22-4595-01 17 27944542 27944542 C G CORO6 Missense_Mutation p.Q243H 0.31 deleterious(0.03) benign(0.286) TCGA-22-4595-01 17 2966397 2966397 A G OR1D5 Missense_Mutation p.C169R 0.14 deleterious(0) probably_damaging(1) TCGA-22-4595-01 17 32955625 32955625 C G TMEM132E Missense_Mutation p.R258G 0.33 tolerated(0.16) possibly_damaging(0.813) TCGA-22-4595-01 17 39411729 39411729 C A KRTAP9-9 Missense_Mutation p.P31H 0.27 deleterious(0.02) unknown(0) TCGA-22-4595-01 17 40861923 40861923 G T EZH1 Silent p.I478I 0.28 TCGA-22-4595-01 17 48551024 48551024 A T ACSF2 Splice_Site p.X492_splice 0.47 TCGA-22-4595-01 17 51902235 51902236 - G KIF2B Frame_Shift_Ins p.S616Ifs*2 0.44 TCGA-22-4595-01 17 54921412 54921412 A T DGKE Missense_Mutation p.E166V 0.19 tolerated(0.08) benign(0.289) TCGA-22-4595-01 17 57232389 57232389 C T SKA2 Intron 0.48 TCGA-22-4595-01 17 57232574 57232574 C G SKA2 5'UTR 0.29 TCGA-22-4595-01 17 58945988 58945988 G C BCAS3 Missense_Mutation p.E176D 0.51 tolerated(0.45) benign(0.055) TCGA-22-4595-01 17 62042025 62042025 C T SCN4A Missense_Mutation p.A419T 0.17 deleterious(0.04) possibly_damaging(0.899) TCGA-22-4595-01 17 74475058 74475058 G A RHBDF2 Missense_Mutation p.R197C 0.35 deleterious(0) probably_damaging(1) TCGA-22-4595-01 17 7577532 7577532 G A TP53 Missense_Mutation p.P250L 0.31 deleterious(0) probably_damaging(1) TCGA-22-4595-01 17 77040025 77040025 C A C1QTNF1 Intron 0.54 TCGA-22-4595-01 17 78293372 78293372 G T RNF213 Intron 0.66 TCGA-22-4595-01 17 79082295 79082295 G A BAIAP2 Silent p.A507A 0.13 TCGA-22-4595-01 17 8076700 8076700 C T TMEM107 3'Flank 0.21 TCGA-22-4595-01 17 915092 915092 C T ABR Missense_Mutation p.D699N 0.25 tolerated(0.27) benign(0.106) TCGA-22-4595-01 18 14478433 14478433 T A CXADRP3 RNA 0.20 TCGA-22-4595-01 18 2585114 2585114 A T NDC80 Silent p.I194I 0.29 TCGA-22-4595-01 18 28913574 28913574 C A DSG1 Missense_Mutation p.A236D 0.17 deleterious(0) possibly_damaging(0.491) TCGA-22-4595-01 18 30517923 30517923 T C CCDC178 3'UTR 0.18 TCGA-22-4595-01 18 9255745 9255749 AAATT - ANKRD12 Frame_Shift_Del p.I828Rfs*5 0.29 TCGA-22-4595-01 19 11223989 11223989 G A LDLR Missense_Mutation p.E408K 0.26 deleterious(0.02) possibly_damaging(0.531) TCGA-22-4595-01 19 13325317 13325317 T A CACNA1A Missense_Mutation p.K1946M 0.28 possibly_damaging(0.891) TCGA-22-4595-01 19 13325326 13325326 G A CACNA1A Missense_Mutation p.T1943I 0.29 possibly_damaging(0.702) TCGA-22-4595-01 19 14043364 14043364 C G PODNL1 3'UTR 0.24 TCGA-22-4595-01 19 16008362 16008362 C A CYP4F2 Silent p.L20L 0.25 TCGA-22-4595-01 19 17420439 17420439 G A DDA1 5'UTR 0.31 TCGA-22-4595-01 19 17436171 17436171 G A ANO8 Missense_Mutation p.R896C 0.30 tolerated(0.05) unknown(0) TCGA-22-4595-01 19 17838969 17838969 C G MAP1S Missense_Mutation p.R926G 0.23 tolerated(0.27) benign(0.012) TCGA-22-4595-01 19 19368619 19368619 T A HAPLN4 3'UTR 0.24 TCGA-22-4595-01 19 19762502 19762502 C G ATP13A1 Missense_Mutation p.E777D 0.16 tolerated(0.68) benign(0.003) TCGA-22-4595-01 19 22780086 22780086 T G RN7SL860P 5'Flank 0.15 TCGA-22-4595-01 19 36352134 36352134 G T KIRREL2 Silent p.A389A 0.27 TCGA-22-4595-01 19 36352135 36352135 G A KIRREL2 Missense_Mutation p.E390K 0.28 deleterious(0.04) possibly_damaging(0.589) TCGA-22-4595-01 19 3778537 3778537 G C MATK Missense_Mutation p.F419L 0.23 deleterious(0) probably_damaging(0.93) TCGA-22-4595-01 19 38610161 38610161 C A SIPA1L3 Missense_Mutation p.T836N 0.20 deleterious(0) probably_damaging(0.998) TCGA-22-4595-01 19 42738600 42738600 A C GSK3A Missense_Mutation p.L270W 0.29 deleterious(0) probably_damaging(1) TCGA-22-4595-01 19 43690529 43690529 G T PSG5 Missense_Mutation p.T10K 0.26 tolerated(0.39) probably_damaging(0.974) TCGA-22-4595-01 19 45667444 45667444 T A TRAPPC6A Missense_Mutation p.Q125L 0.31 deleterious(0) possibly_damaging(0.82) TCGA-22-4595-01 19 45797675 45797675 G T MARK4 Missense_Mutation p.E521D 0.18 tolerated(1) benign(0.013) TCGA-22-4595-01 19 4793666 4793666 G C FEM1A Silent p.L600L 0.24 TCGA-22-4595-01 19 50865269 50865269 G C NAPSA Silent p.L102L 0.25 TCGA-22-4595-01 19 54191795 54191795 T A MIR1283-1 RNA 0.28 TCGA-22-4595-01 19 55450741 55450741 C T NLRP7 Silent p.L482L 0.23 TCGA-22-4595-01 19 55602817 55602817 G - PPP1R12C 3'UTR 0.27 TCGA-22-4595-01 19 55708542 55708542 C T PTPRH Missense_Mutation p.V645M 0.25 probably_damaging(0.982) TCGA-22-4595-01 19 55889435 55889435 G C TMEM190 Missense_Mutation p.R133P 0.27 deleterious_low_confidence(0.01) probably_damaging(0.933) TCGA-22-4595-01 19 56407341 56407341 C T NLRP13 Silent p.K1034K 0.21 TCGA-22-4595-01 19 56539869 56539869 C A NLRP5 Missense_Mutation p.P757H 0.22 deleterious(0.01) probably_damaging(0.979) TCGA-22-4595-01 19 58018583 58018583 C G ZNF773 Missense_Mutation p.L374V 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-22-4595-01 19 58578091 58578091 A T ZNF135 Missense_Mutation p.Q104L 0.24 tolerated(0.3) benign(0) TCGA-22-4595-01 19 58991801 58991801 A T ZNF446 Missense_Mutation p.H354L 0.21 deleterious(0) benign(0.098) TCGA-22-4595-01 19 59011000 59011000 C T SLC27A5 Missense_Mutation p.R509H 0.20 deleterious(0.05) benign(0.064) TCGA-22-4595-01 19 622714 622714 G A POLRMT Silent p.T498T 0.33 TCGA-22-4595-01 19 6495267 6495267 T A TUBB4A Missense_Mutation p.M415L 0.21 tolerated_low_confidence(0.15) benign(0.01) TCGA-22-4595-01 19 855689 855689 G A ELANE Silent p.G164G 0.21 TCGA-22-4595-01 1 10328223 10328223 A G KIF1B Missense_Mutation p.T208A 0.10 deleterious(0) probably_damaging(0.981) TCGA-22-4595-01 1 111892811 111892811 T A PIFO Missense_Mutation p.V158D 0.22 deleterious(0) probably_damaging(0.99) TCGA-22-4595-01 1 1372497 1372497 C T VWA1 Silent p.F88F 0.20 TCGA-22-4595-01 1 154164509 154164509 G T TPM3 5'UTR 0.25 TCGA-22-4595-01 1 156618367 156618367 G T BCAN Silent p.L259L 0.22 TCGA-22-4595-01 1 157668205 157668205 G C FCRL3 Silent p.L89L 0.14 TCGA-22-4595-01 1 15788132 15788132 T A CELA2A Missense_Mutation p.L69Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-22-4595-01 1 159683350 159683350 C A CRP Missense_Mutation p.G214C 0.24 deleterious(0.01) probably_damaging(0.927) TCGA-22-4595-01 1 160111234 160111234 T A ATP1A2 3'UTR 0.10 TCGA-22-4595-01 1 160209783 160209783 C A DCAF8 Nonsense_Mutation p.E143* 0.24 TCGA-22-4595-01 1 161090708 161090708 G C NIT1 3'UTR 0.36 TCGA-22-4595-01 1 161162001 161162001 G C ADAMTS4 Missense_Mutation p.D647E 0.17 tolerated(0.2) benign(0.003) TCGA-22-4595-01 1 162824578 162824578 G T C1orf110 Missense_Mutation p.P296T 0.35 tolerated(0.44) probably_damaging(0.958) TCGA-22-4595-01 1 16342218 16342218 G C HSPB7 Missense_Mutation p.H124D 0.19 deleterious(0) probably_damaging(0.965) TCGA-22-4595-01 1 168698286 168698286 G T DPT Silent p.R43R 0.19 TCGA-22-4595-01 1 169952476 169952476 G A KIFAP3 Missense_Mutation p.P481S 0.50 tolerated(0.26) possibly_damaging(0.696) TCGA-22-4595-01 1 176905257 176905257 T C ASTN1 Intron 0.50 TCGA-22-4595-01 1 179380308 179380308 T A AXDND1 Nonsense_Mutation p.Y379* 0.27 TCGA-22-4595-01 1 179520317 179520317 G T NPHS2 Silent p.P381P 0.20 TCGA-22-4595-01 1 185878584 185878584 A T HMCN1 Missense_Mutation p.E246V 0.19 probably_damaging(0.95) TCGA-22-4595-01 1 193028518 193028518 C T UCHL5 5'UTR 0.16 TCGA-22-4595-01 1 197021954 197021954 A G F13B Silent p.T455T 0.21 TCGA-22-4595-01 1 213147329 213147329 C A VASH2 Silent p.T260T 0.23 TCGA-22-4595-01 1 216011388 216011388 C A USH2A Missense_Mutation p.V3106L 0.25 benign(0.036) TCGA-22-4595-01 1 22142441 22142441 T G LDLRAD2 Missense_Mutation p.C173G 0.21 deleterious(0.04) probably_damaging(0.995) TCGA-22-4595-01 1 223567978 223567978 G C C1orf65 Silent p.R387R 0.25 TCGA-22-4595-01 1 237919660 237919660 G A RYR2 Missense_Mutation p.V3740M 0.30 probably_damaging(0.968) TCGA-22-4595-01 1 240371821 240371821 C T FMN2 Silent p.L1237L 0.28 TCGA-22-4595-01 1 241146382 241146382 G C RGS7 Missense_Mutation p.P75A 0.33 tolerated(0.7) benign(0.115) TCGA-22-4595-01 1 24434627 24434627 G C MYOM3 Intron 0.28 TCGA-22-4595-01 1 28293671 28293671 C T XKR8 Missense_Mutation p.P383L 0.16 tolerated(0.07) benign(0.015) TCGA-22-4595-01 1 41303990 41303990 C A KCNQ4 Missense_Mutation p.S628Y 0.24 deleterious(0) probably_damaging(0.997) TCGA-22-4595-01 1 41303991 41303991 C T KCNQ4 Silent p.S628S 0.23 TCGA-22-4595-01 1 43748952 43748952 G C C1orf210 5'UTR 0.20 TCGA-22-4595-01 1 46489553 46489553 C T MAST2 Missense_Mutation p.R561C 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-22-4595-01 1 52704579 52704579 C G ZFYVE9 Missense_Mutation p.S497C 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-22-4595-01 1 65897503 65897503 C A LEPROT Nonsense_Mutation p.C99* 0.31 TCGA-22-4595-01 1 75037713 75037713 C G C1orf173 Silent p.V1227V 0.27 TCGA-22-4595-01 1 7863934 7863934 C G PER3 Intron 0.29 TCGA-22-4595-01 1 8525994 8525994 C T RERE Silent p.E398E 0.20 TCGA-22-4595-01 1 89735346 89735346 T C GBP5 Intron 0.36 TCGA-22-4595-01 1 94354486 94354486 C A GCLM 3'UTR 0.30 TCGA-22-4595-01 20 20278922 20278922 G T C20orf26 Missense_Mutation p.R1105M 0.23 deleterious(0.03) benign(0.383) TCGA-22-4595-01 20 30584385 30584385 G A XKR7 Missense_Mutation p.D289N 0.29 deleterious(0.02) possibly_damaging(0.744) TCGA-22-4595-01 20 33623037 33623037 C A TRPC4AP Missense_Mutation p.G314C 0.24 deleterious(0.03) probably_damaging(0.944) TCGA-22-4595-01 20 48330202 48330202 C A B4GALT5 Missense_Mutation p.R9L 0.50 tolerated_low_confidence(0.14) unknown(0) TCGA-22-4595-01 21 19635169 19635169 G A CHODL Silent p.L232L 0.20 TCGA-22-4595-01 21 22782637 22782637 G T NCAM2 Missense_Mutation p.W413C 0.17 deleterious(0) probably_damaging(1) TCGA-22-4595-01 22 22658344 22658344 T G BMS1P20 RNA 0.23 TCGA-22-4595-01 22 31524495 31524495 T C INPP5J Missense_Mutation p.L315P 0.26 deleterious(0) probably_damaging(1) TCGA-22-4595-01 22 31524595 31524595 C T INPP5J Silent p.Y348Y 0.19 TCGA-22-4595-01 22 32545743 32545743 G T C22orf42 Missense_Mutation p.L227I 0.17 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-22-4595-01 22 35463085 35463085 G T ISX Missense_Mutation p.C2F 0.23 deleterious_low_confidence(0) benign(0.068) TCGA-22-4595-01 22 36737470 36737470 C G MYH9 Missense_Mutation p.E145D 0.28 possibly_damaging(0.464) TCGA-22-4595-01 22 37769098 37769098 G A ELFN2 3'UTR 0.28 TCGA-22-4595-01 22 41574090 41574090 C A EP300 Missense_Mutation p.H2125Q 0.21 possibly_damaging(0.88) TCGA-22-4595-01 22 43308058 43308058 C T PACSIN2 Missense_Mutation p.G10E 0.17 tolerated(0.08) possibly_damaging(0.883) TCGA-22-4595-01 22 44004396 44004396 G A EFCAB6 Missense_Mutation p.L883F 0.21 deleterious(0) probably_damaging(0.988) TCGA-22-4595-01 22 47189457 47189457 C G TBC1D22A Missense_Mutation p.T60S 0.21 tolerated(1) probably_damaging(0.995) TCGA-22-4595-01 2 100906846 100906846 G A LONRF2 Silent p.D598D 0.09 TCGA-22-4595-01 2 118693071 118693071 C A CCDC93 Missense_Mutation p.K576N 0.31 deleterious(0) probably_damaging(0.992) TCGA-22-4595-01 2 118860889 118860889 G T INSIG2 Missense_Mutation p.A121S 0.16 deleterious(0.01) benign(0.26) TCGA-22-4595-01 2 120069255 120069255 C A C2orf76 Nonsense_Mutation p.E83* 0.23 TCGA-22-4595-01 2 127956949 127956949 C A CYP27C1 Intron 0.13 TCGA-22-4595-01 2 130877689 130877689 G C POTEF Missense_Mutation p.H134D 0.29 deleterious_low_confidence(0) benign(0.08) TCGA-22-4595-01 2 135926423 135926423 G C RAB3GAP1 3'UTR 0.35 TCGA-22-4595-01 2 152300042 152300042 G T RIF1 Splice_Site p.X602_splice 0.29 TCGA-22-4595-01 2 15770167 15770167 G T DDX1 Silent p.P675P 0.28 TCGA-22-4595-01 2 160698800 160698800 G A LY75-CD302 Missense_Mutation p.S1079F 0.27 deleterious(0) possibly_damaging(0.663) TCGA-22-4595-01 2 162224035 162224035 A G PSMD14 Missense_Mutation p.Y32C 0.37 deleterious(0.01) probably_damaging(0.98) TCGA-22-4595-01 2 166915199 166915199 C A SCN1A Splice_Site p.X89_splice 0.26 TCGA-22-4595-01 2 16740833 16740833 C T FAM49A Silent p.T244T 0.18 TCGA-22-4595-01 2 179633453 179633453 T C TTN Missense_Mutation p.D3037G 0.17 TCGA-22-4595-01 2 18113820 18113820 A T KCNS3 3'UTR 0.34 TCGA-22-4595-01 2 190426507 190426507 G C SLC40A1 3'UTR 0.19 TCGA-22-4595-01 2 198950210 198950210 C A PLCL1 Missense_Mutation p.Q657K 0.26 deleterious(0) probably_damaging(0.995) TCGA-22-4595-01 2 201846554 201846561 CAGGTTTA - FAM126B Frame_Shift_Del p.V342Efs*2 0.27 TCGA-22-4595-01 2 214727276 214727276 G T SPAG16 Missense_Mutation p.G380C 0.21 deleterious(0.01) possibly_damaging(0.598) TCGA-22-4595-01 2 215279254 215279254 A G VWC2L Missense_Mutation p.K113E 0.19 deleterious(0.04) probably_damaging(0.969) TCGA-22-4595-01 2 219679732 219679732 G A CYP27A1 Silent p.Q525Q 0.39 TCGA-22-4595-01 2 242192429 242192429 C T HDLBP Missense_Mutation p.E439K 0.23 deleterious(0.01) benign(0.394) TCGA-22-4595-01 2 24261359 24261359 T C C2orf44 Missense_Mutation p.I336V 0.34 deleterious(0.04) benign(0.128) TCGA-22-4595-01 2 25965964 25965964 G A ASXL2 Missense_Mutation p.S1081L 0.21 tolerated(0.07) possibly_damaging(0.613) TCGA-22-4595-01 2 26537502 26537502 G T GPR113 Intron 0.35 TCGA-22-4595-01 2 39431710 39431711 - T CDKL4 Frame_Shift_Ins p.G138Rfs*7 0.28 TCGA-22-4595-01 2 47748348 47748348 G T KCNK12 Silent p.R331R 0.48 TCGA-22-4595-01 2 50847250 50847250 A T NRXN1 Silent p.S450S 0.16 TCGA-22-4595-01 2 55746822 55746822 G C CCDC104 5'UTR 0.11 TCGA-22-4595-01 2 71170778 71170787 CCTCCCCCAG - ATP6V1B1 Splice_Site p.X40_splice 0.38 TCGA-22-4595-01 2 75899136 75899136 T C GCFC2 Silent p.V632V 0.26 TCGA-22-4595-01 2 80530588 80530588 C A LRRTM1 Silent p.T119T 0.21 TCGA-22-4595-01 2 85273227 85273227 G C KCMF1 Missense_Mutation p.D143H 0.19 deleterious(0) probably_damaging(0.997) TCGA-22-4595-01 2 85890958 85890958 C G SFTPB Missense_Mutation p.V241L 0.17 tolerated(0.63) benign(0.005) TCGA-22-4595-01 2 89265834 89265834 G T IGKV1-6 Missense_Mutation p.L100M 0.19 tolerated(0.07) possibly_damaging(0.885) TCGA-22-4595-01 2 89265835 89265835 G T IGKV1-6 Missense_Mutation p.S99R 0.19 deleterious(0.03) benign(0.157) TCGA-22-4595-01 2 89326822 89326822 G T IGKV3-11 Missense_Mutation p.P64H 0.28 deleterious(0) probably_damaging(1) TCGA-22-4595-01 2 89544498 89544498 G T IGKV2-30 Silent p.S42S 0.16 TCGA-22-4595-01 2 89544572 89544572 A T IGKV2-30 Missense_Mutation p.S18T 0.21 tolerated(0.2) benign(0.048) TCGA-22-4595-01 2 96657542 96657542 G T ANKRD36C 5'Flank 0.36 TCGA-22-4595-01 3 108270104 108270104 C A KIAA1524 Missense_Mutation p.L870F 0.18 deleterious(0.01) possibly_damaging(0.459) TCGA-22-4595-01 3 113955261 113955261 C A ZNF80 Nonsense_Mutation p.E221* 0.19 TCGA-22-4595-01 3 121518141 121518141 C T IQCB1 Missense_Mutation p.S223N 0.15 tolerated(1) benign(0.007) TCGA-22-4595-01 3 122003471 122003471 C T CASR Silent p.R900R 0.32 TCGA-22-4595-01 3 122003473 122003473 G C CASR Missense_Mutation p.R901P 0.33 deleterious_low_confidence(0) possibly_damaging(0.637) TCGA-22-4595-01 3 122437277 122437287 GCAACTTTTCG - PARP14 Frame_Shift_Del p.A1427Gfs*4 0.21 TCGA-22-4595-01 3 124732636 124732636 G A HEG1 Missense_Mutation p.S596L 0.20 tolerated(0.52) benign(0.007) TCGA-22-4595-01 3 127317264 127317264 G T MCM2 5'UTR 0.20 TCGA-22-4595-01 3 128971157 128971157 C T COPG1 Missense_Mutation p.R42W 0.26 deleterious(0) probably_damaging(0.999) TCGA-22-4595-01 3 134920518 134920518 A T EPHB1 Missense_Mutation p.Y778F 0.20 deleterious(0.04) probably_damaging(0.955) TCGA-22-4595-01 3 169546579 169546579 G T LRRIQ4 Silent p.L351L 0.45 TCGA-22-4595-01 3 175042061 175042061 T G NAALADL2 Missense_Mutation p.M346R 0.15 tolerated(0.13) benign(0.031) TCGA-22-4595-01 3 180366086 180366086 T C CCDC39 Missense_Mutation p.Q410R 0.15 tolerated(0.07) benign(0.209) TCGA-22-4595-01 3 183368731 183368731 A T KLHL24 Missense_Mutation p.E196V 0.47 tolerated(0.49) benign(0.007) TCGA-22-4595-01 3 183551362 183551362 T G PARL Missense_Mutation p.I316L 0.19 tolerated(0.18) benign(0.057) TCGA-22-4595-01 3 183645225 183645225 G T ABCC5 Missense_Mutation p.Q1314K 0.08 tolerated(1) benign(0.055) TCGA-22-4595-01 3 183756643 183756643 G T HTR3D Missense_Mutation p.K415N 0.23 deleterious(0.05) probably_damaging(0.969) TCGA-22-4595-01 3 184580696 184580696 A T VPS8 Silent p.S412S 0.14 TCGA-22-4595-01 3 186508180 186508180 T C RFC4 Missense_Mutation p.K273E 0.16 tolerated(0.27) benign(0.034) TCGA-22-4595-01 3 195475876 195475876 C G MUC4 Missense_Mutation p.V5311L 0.15 benign(0.04) TCGA-22-4595-01 3 361468 361468 G T CHL1 Silent p.P3P 0.35 TCGA-22-4595-01 3 431056 431056 C G CHL1 Missense_Mutation p.T790R 0.49 deleterious(0.04) possibly_damaging(0.905) TCGA-22-4595-01 3 47286396 47286396 C T KIF9 Missense_Mutation p.D467N 0.30 tolerated(0.06) benign(0.016) TCGA-22-4595-01 3 52829632 52829632 C G ITIH3 Missense_Mutation p.P36R 0.13 tolerated(0.46) benign(0.118) TCGA-22-4595-01 3 7620396 7620396 G A GRM7 Silent p.G601G 0.41 TCGA-22-4595-01 3 89498436 89498436 C T EPHA3 Missense_Mutation p.S803L 0.23 deleterious(0) possibly_damaging(0.891) TCGA-22-4595-01 3 9908701 9908701 G C CIDEC 3'Flank 0.33 TCGA-22-4595-01 4 100460363 100460363 G A C4orf17 Silent p.E224E 0.32 TCGA-22-4595-01 4 114267166 114267166 G C ANK2 Silent p.P1453P 0.31 TCGA-22-4595-01 4 122722986 122722986 T G EXOSC9 Missense_Mutation p.L24R 0.29 deleterious(0) probably_damaging(0.975) TCGA-22-4595-01 4 145640048 145640048 G C HHIP Missense_Mutation p.S567T 0.27 tolerated(1) benign(0.009) TCGA-22-4595-01 4 155527888 155527888 G T FGG Missense_Mutation p.H366Q 0.32 deleterious(0) probably_damaging(1) TCGA-22-4595-01 4 156721094 156721094 C - GUCY1B3 Frame_Shift_Del p.T349Rfs*32 0.36 TCGA-22-4595-01 4 156757953 156757953 C A ASIC5 Missense_Mutation p.V375F 0.22 deleterious(0.01) possibly_damaging(0.904) TCGA-22-4595-01 4 159782811 159782811 C G FNIP2 Missense_Mutation p.P450A 0.24 deleterious(0.04) possibly_damaging(0.493) TCGA-22-4595-01 4 186380094 186380094 C A CCDC110 Missense_Mutation p.K549N 0.18 tolerated(0.1) possibly_damaging(0.783) TCGA-22-4595-01 4 47033717 47033717 G T GABRB1 Missense_Mutation p.V17L 0.21 tolerated(0.69) benign(0.001) TCGA-22-4595-01 4 49052819 49052819 G C CWH43 Silent p.V658V 0.19 TCGA-22-4595-01 4 55127335 55127335 G C PDGFRA Silent p.L41L 0.29 TCGA-22-4595-01 4 5823413 5823413 C T CRMP1 3'UTR 0.56 TCGA-22-4595-01 4 68456651 68456658 ACTATTGA - STAP1 Frame_Shift_Del p.I238Gfs*14 0.25 TCGA-22-4595-01 4 77290599 77290599 G A CCDC158 Nonsense_Mutation p.Q443* 0.21 TCGA-22-4595-01 4 81967617 81967617 A T BMP3 Missense_Mutation p.T348S 0.21 deleterious(0.01) possibly_damaging(0.715) TCGA-22-4595-01 5 132939579 132939579 C A FSTL4 Silent p.P32P 0.31 TCGA-22-4595-01 5 149324107 149324107 C T PDE6A Missense_Mutation p.V44M 0.47 deleterious(0.04) benign(0.046) TCGA-22-4595-01 5 149901021 149901021 C T NDST1 Missense_Mutation p.P69S 0.46 tolerated(0.2) benign(0.05) TCGA-22-4595-01 5 150276413 150276413 C A ZNF300 Missense_Mutation p.G146C 0.44 tolerated(0.07) possibly_damaging(0.614) TCGA-22-4595-01 5 156819909 156819909 G A CYFIP2 Silent p.L1195L 0.20 TCGA-22-4595-01 5 164028215 164028215 C G CTC-340A15.2 RNA 0.52 TCGA-22-4595-01 5 169122822 169122822 G T DOCK2 Missense_Mutation p.D287Y 0.51 deleterious(0) probably_damaging(0.997) TCGA-22-4595-01 5 176638319 176638319 G C NSD1 Missense_Mutation p.Q973H 0.52 deleterious_low_confidence(0) possibly_damaging(0.778) TCGA-22-4595-01 5 23524526 23524526 G T PRDM9 Missense_Mutation p.R345L 0.29 deleterious(0) benign(0.084) TCGA-22-4595-01 5 26988403 26988403 G A CDH9 Missense_Mutation p.T13I 0.17 tolerated(1) benign(0.027) TCGA-22-4595-01 5 36958243 36958243 G T NIPBL Missense_Mutation p.G90C 0.21 deleterious(0) probably_damaging(1) TCGA-22-4595-01 5 44809368 44809368 G C MRPS30 Missense_Mutation p.A102P 0.36 tolerated(0.1) probably_damaging(0.981) TCGA-22-4595-01 5 75008707 75008707 C T POC5 Missense_Mutation p.R19Q 0.23 tolerated(0.51) benign(0) TCGA-22-4595-01 5 79028281 79028281 A T CMYA5 Silent p.P1231P 0.40 TCGA-22-4595-01 5 89913642 89913642 G T GPR98 Missense_Mutation p.D77Y 0.20 probably_damaging(0.953) TCGA-22-4595-01 5 9052140 9052140 T G SEMA5A Missense_Mutation p.E897A 0.19 tolerated(0.29) benign(0.263) TCGA-22-4595-01 5 96514781 96514781 G C RIOK2 Silent p.L61L 0.20 TCGA-22-4595-01 6 13365013 13365013 C T GFOD1 Missense_Mutation p.E379K 0.34 tolerated(0.21) benign(0.282) TCGA-22-4595-01 6 143755110 143755110 T A ADAT2 Silent p.R70R 0.36 TCGA-22-4595-01 6 152651065 152651065 C A SYNE1 Missense_Mutation p.D4919Y 0.29 benign(0.429) TCGA-22-4595-01 6 26423164 26423164 A T BTN2A3P RNA 0.60 TCGA-22-4595-01 6 2895721 2895721 G T SERPINB9 Missense_Mutation p.Q110K 0.21 tolerated(1) benign(0.005) TCGA-22-4595-01 6 2948583 2948583 C A SERPINB6 Missense_Mutation p.Q360H 0.20 deleterious(0.01) benign(0.25) TCGA-22-4595-01 6 31686934 31686934 G A LY6G6C Missense_Mutation p.P106L 0.57 deleterious_low_confidence(0) possibly_damaging(0.656) TCGA-22-4595-01 6 31936519 31936519 C T SKIV2L Silent p.F1042F 0.23 TCGA-22-4595-01 6 33157234 33157234 A G COL11A2 Missense_Mutation p.V32A 0.24 benign(0.167) TCGA-22-4595-01 6 33260956 33260956 C T RGL2 Missense_Mutation p.R615H 0.47 deleterious(0.02) probably_damaging(0.976) TCGA-22-4595-01 6 33665322 33665322 G C UQCC2 3'UTR 0.40 TCGA-22-4595-01 6 35840405 35840405 C T SRPK1 Missense_Mutation p.R229Q 0.40 deleterious(0) possibly_damaging(0.55) TCGA-22-4595-01 6 38819450 38819450 G T DNAH8 Missense_Mutation p.Q1605H 0.32 probably_damaging(1) TCGA-22-4595-01 6 39159142 39159143 CC A KCNK5 Frame_Shift_Del p.V342Cfs*4 0.37 TCGA-22-4595-01 6 39159251 39159251 G C KCNK5 Missense_Mutation p.I305M 0.25 deleterious(0) probably_damaging(0.999) TCGA-22-4595-01 6 39846265 39846265 G C DAAM2 Silent p.T482T 0.35 TCGA-22-4595-01 6 50718971 50718971 C A TFAP2D Missense_Mutation p.P358Q 0.20 deleterious(0) probably_damaging(0.982) TCGA-22-4595-01 6 73100434 73100434 G T RIMS1 Missense_Mutation p.G1501C 0.25 deleterious(0.02) possibly_damaging(0.831) TCGA-22-4595-01 6 73100435 73100435 G T RIMS1 Missense_Mutation p.G1501V 0.25 deleterious(0) probably_damaging(0.98) TCGA-22-4595-01 6 7569526 7569526 G T DSP Silent p.G509G 0.50 TCGA-22-4595-01 6 76022288 76022294 CTGACTC - FILIP1 Frame_Shift_Del p.G1085Vfs*9 0.38 TCGA-22-4595-01 6 88128111 88128111 G C C6ORF165 Missense_Mutation p.E273Q 0.21 deleterious(0.01) possibly_damaging(0.78) TCGA-22-4595-01 7 100280005 100280005 C T GIGYF1 Missense_Mutation p.G901S 0.27 tolerated(0.15) probably_damaging(0.999) TCGA-22-4595-01 7 137255959 137255959 C A DGKI Missense_Mutation p.G637C 0.29 deleterious(0) probably_damaging(1) TCGA-22-4595-01 7 141464388 141464388 A T TAS2R3 Missense_Mutation p.S144C 0.32 tolerated(0.14) benign(0.272) TCGA-22-4595-01 7 150905061 150905061 G A ABCF2 3'UTR 0.40 TCGA-22-4595-01 7 157049687 157049687 A T UBE3C Missense_Mutation p.K1010N 0.28 deleterious(0.02) probably_damaging(0.937) TCGA-22-4595-01 7 2297030 2297030 G C SNX8 Silent p.S368S 0.18 TCGA-22-4595-01 7 2751971 2751971 A C AMZ1 Missense_Mutation p.Y319S 0.29 tolerated(0.06) benign(0.155) TCGA-22-4595-01 7 42977163 42977163 C T MRPL32 Silent p.F185F 0.23 TCGA-22-4595-01 7 43351502 43351502 C A HECW1 Silent p.G56G 0.32 TCGA-22-4595-01 7 45701765 45701765 G C ADCY1 Missense_Mutation p.K519N 0.32 tolerated(0.28) benign(0.382) TCGA-22-4595-01 7 4917591 4917591 C A RADIL Silent p.S60S 0.32 TCGA-22-4595-01 7 64167413 64167413 A G ZNF107 Missense_Mutation p.Y244C 0.25 deleterious(0.02) probably_damaging(0.997) TCGA-22-4595-01 7 66490007 66490007 A T TYW1 Nonsense_Mutation p.K328* 0.25 TCGA-22-4595-01 7 70880885 70880885 G T WBSCR17 Missense_Mutation p.K200N 0.15 deleterious(0) possibly_damaging(0.711) TCGA-22-4595-01 7 88965447 88965447 C G ZNF804B Missense_Mutation p.Q1051E 0.27 deleterious(0.05) benign(0.035) TCGA-22-4595-01 7 92147523 92147523 C A PEX1 Missense_Mutation p.R135L 0.34 deleterious(0) probably_damaging(1) TCGA-22-4595-01 7 95167000 95167000 A T ASB4 Missense_Mutation p.I404F 0.24 deleterious(0) possibly_damaging(0.691) TCGA-22-4595-01 8 104075191 104075191 C T ATP6V1C1 Missense_Mutation p.S217L 0.24 tolerated(0.64) benign(0.023) TCGA-22-4595-01 8 104076965 104076974 AGTGAATTTT - ATP6V1C1 Frame_Shift_Del p.N286Kfs*9 0.31 TCGA-22-4595-01 8 11689122 11689122 G A FDFT1 Missense_Mutation p.M325I 0.23 tolerated(0.53) possibly_damaging(0.601) TCGA-22-4595-01 8 11995788 11995788 G T USP17L2 Missense_Mutation p.A161D 0.21 deleterious(0) probably_damaging(1) TCGA-22-4595-01 8 131792811 131792811 G C ADCY8 Missense_Mutation p.A1194G 0.29 tolerated(0.1) benign(0) TCGA-22-4595-01 8 133141622 133141622 C A KCNQ3 Missense_Mutation p.G836C 0.28 deleterious(0) probably_damaging(1) TCGA-22-4595-01 8 139838949 139838949 C T COL22A1 Silent p.K307K 0.35 TCGA-22-4595-01 8 145737345 145737345 C T RECQL4 Silent p.Q1114Q 0.30 TCGA-22-4595-01 8 2024291 2024291 C T MYOM2 Silent p.D397D 0.13 TCGA-22-4595-01 8 49641664 49641664 T C EFCAB1 Silent p.E171E 0.21 TCGA-22-4595-01 8 55541884 55541884 A T RP1 Silent p.L1814L 0.24 TCGA-22-4595-01 8 59739410 59739410 C G TOX Missense_Mutation p.A326P 0.28 deleterious(0) probably_damaging(0.999) TCGA-22-4595-01 8 62366772 62366772 C G CLVS1 Missense_Mutation p.L235V 0.21 tolerated(1) benign(0.006) TCGA-22-4595-01 8 71050559 71050559 C G NCOA2 Missense_Mutation p.E1013Q 0.28 deleterious(0.01) possibly_damaging(0.563) TCGA-22-4595-01 8 7308359 7308359 A T SPAG11B Missense_Mutation p.F93Y 0.09 tolerated(0.24) probably_damaging(0.989) TCGA-22-4595-01 8 89053690 89053690 C T MMP16 Silent p.%3D 0.30 TCGA-22-4595-01 8 89339430 89339430 G T MMP16 Silent p.I2I 0.23 TCGA-22-4595-01 8 8998305 8998307 TAG - PPP1R3B In_Frame_Del p.Y285del 0.32 TCGA-22-4595-01 8 95500827 95500827 T G KIAA1429 3'UTR 0.19 TCGA-22-4595-01 8 95686605 95686605 T C ESRP1 Missense_Mutation p.C508R 0.26 tolerated(0.87) possibly_damaging(0.588) TCGA-22-4595-01 9 116045413 116045413 A G PRPF4 Missense_Mutation p.Y162C 0.30 tolerated(0.2) benign(0.002) TCGA-22-4595-01 9 117846753 117846753 T C TNC Splice_Site p.X623_splice 0.36 TCGA-22-4595-01 9 121971016 121971016 G T BRINP1 Missense_Mutation p.H376N 0.20 tolerated(0.12) possibly_damaging(0.775) TCGA-22-4595-01 9 123330665 123330665 C T CDK5RAP2 Silent p.L43L 0.22 TCGA-22-4595-01 9 125582217 125582217 G C PDCL 3'UTR 0.50 TCGA-22-4595-01 9 130478381 130478381 G A PTRH1 5'UTR 0.28 TCGA-22-4595-01 9 139311367 139311367 C G PMPCA Intron 0.17 TCGA-22-4595-01 9 34372105 34372105 C G KIAA1161 Silent p.L245L 0.19 TCGA-22-4595-01 9 34514434 34514434 G A DNAI1 Missense_Mutation p.A538T 0.21 deleterious(0) probably_damaging(0.991) TCGA-22-4595-01 9 35616540 35616540 G A CD72 Intron 0.26 TCGA-22-4595-01 9 37541752 37541752 C A FBXO10 Missense_Mutation p.G5V 0.20 deleterious(0) possibly_damaging(0.607) TCGA-22-4595-01 9 40705426 40705426 G T SPATA31A3 Missense_Mutation p.C1028F 0.61 tolerated(0.32) benign(0.056) TCGA-22-4595-01 9 73296450 73296450 A G TRPM3 Silent p.D439D 0.20 TCGA-22-4595-01 9 84531810 84531810 A T SPATA31D5P RNA 0.30 TCGA-22-4595-01 X 100871326 100871326 G T ARMCX6 Missense_Mutation p.N95K 0.41 tolerated(0.23) benign(0.018) TCGA-22-4595-01 X 102318111 102318111 C G BEX1 Missense_Mutation p.G31A 0.46 tolerated(0.06) benign(0.086) TCGA-22-4595-01 X 118215378 118215378 G T KIAA1210 Missense_Mutation p.P1682T 0.50 tolerated(0.11) probably_damaging(0.998) TCGA-22-4595-01 X 122319751 122319751 C G GRIA3 Missense_Mutation p.N59K 0.45 deleterious(0.01) probably_damaging(1) TCGA-22-4595-01 X 122757717 122757717 G C THOC2 Missense_Mutation p.Q1142E 0.47 deleterious(0.01) benign(0.089) TCGA-22-4595-01 X 138664544 138664544 G C MCF2 3'UTR 0.50 TCGA-22-4595-01 X 18195717 18195717 G T BEND2 Silent p.L534L 0.45 TCGA-22-4595-01 X 29973457 29973457 T C IL1RAPL1 Silent p.I537I 0.37 TCGA-22-4595-01 X 41201857 41201857 G A DDX3X Missense_Mutation p.D132N 0.50 tolerated(0.25) benign(0.006) TCGA-22-4595-01 X 41307054 41307054 T C NYX 5'UTR 0.33 TCGA-22-4595-01 X 54776340 54776340 G A ITIH6 Silent p.S1310S 0.39 TCGA-22-4595-01 X 64748148 64748148 G A LAS1L Silent p.C316C 0.32 TCGA-22-4595-01 X 78010794 78010794 C A LPAR4 Missense_Mutation p.P143H 0.46 deleterious(0) probably_damaging(1) TCGA-22-4595-01 X 78426664 78426664 G T GPR174 Missense_Mutation p.A54S 0.25 deleterious(0) probably_damaging(1) TCGA-22-4595-01 X 78427455 78427455 A T GPR174 Missense_Mutation p.K317N 0.48 deleterious(0.02) benign(0.218) TCGA-22-4595-01 X 78427576 78427576 C A GPR174 3'UTR 0.52 TCGA-22-4595-01 X 78622693 78622693 T C ITM2A Missense_Mutation p.N7S 0.65 tolerated(0.08) benign(0.008) TCGA-22-4595-01 X 83128574 83128574 G A CYLC1 Silent p.K286K 0.53 TCGA-22-4595-01 Y 15023843 15023843 G C DDX3Y Missense_Mutation p.G82R 0.46 tolerated(0.09) benign(0.001) TCGA-22-4595-01 Y 21894629 21894629 C A KDM5D Splice_Site p.X312_splice 0.30 TCGA-22-4596-01 10 108923975 108923975 G A SORCS1 Missense_Mutation p.R104C 0.15 tolerated_low_confidence(0.05) possibly_damaging(0.798) TCGA-22-4596-01 10 118386440 118386440 G T PNLIPRP2 Missense_Mutation p.M132I 0.09 tolerated(0.19) benign(0) TCGA-22-4596-01 10 135032378 135032378 C T KNDC1 Missense_Mutation p.S1574F 0.10 tolerated(0.25) probably_damaging(0.969) TCGA-22-4596-01 10 44868764 44868764 C T CXCL12 3'Flank 0.14 TCGA-22-4596-01 10 5014492 5014492 G A AKR1C1 Missense_Mutation p.E224K 0.05 tolerated(0.08) benign(0.005) TCGA-22-4596-01 10 64973591 64973591 G C JMJD1C Missense_Mutation p.T779S 0.12 tolerated_low_confidence(0.28) benign(0.002) TCGA-22-4596-01 11 117059457 117059457 G T SIDT2 Missense_Mutation p.R398L 0.14 tolerated(0.11) probably_damaging(0.999) TCGA-22-4596-01 11 119185260 119185260 C A MCAM Silent p.G166G 0.17 TCGA-22-4596-01 11 123754000 123754000 G T TMEM225 Missense_Mutation p.H175N 0.08 tolerated(0.42) benign(0.403) TCGA-22-4596-01 11 123814372 123814372 C G OR6T1 Missense_Mutation p.Q58H 0.07 deleterious(0.02) possibly_damaging(0.885) TCGA-22-4596-01 11 128709480 128709480 C T KCNJ1 Missense_Mutation p.G239E 0.10 deleterious(0.02) probably_damaging(0.993) TCGA-22-4596-01 11 132082001 132082001 A T NTM Missense_Mutation p.R162S 0.09 deleterious(0) possibly_damaging(0.772) TCGA-22-4596-01 11 33604953 33604953 C T KIAA1549L Missense_Mutation p.T1194M 0.17 tolerated(0.17) probably_damaging(0.992) TCGA-22-4596-01 11 55578959 55578959 G C OR5L1 Missense_Mutation p.C6S 0.09 tolerated(0.46) probably_damaging(0.995) TCGA-22-4596-01 11 56114182 56114182 C T OR8K1 Missense_Mutation p.S223F 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.691) TCGA-22-4596-01 11 65826308 65826308 G C SF3B2 Missense_Mutation p.R325P 0.06 deleterious(0.01) possibly_damaging(0.896) TCGA-22-4596-01 11 94351167 94351167 A T PIWIL4 Missense_Mutation p.I688L 0.18 deleterious(0.03) possibly_damaging(0.702) TCGA-22-4596-01 12 124218536 124218536 G C ATP6V0A2 Missense_Mutation p.V238L 0.05 deleterious(0) possibly_damaging(0.658) TCGA-22-4596-01 12 126137017 126137017 G T TMEM132B Missense_Mutation p.A644S 0.16 deleterious(0) probably_damaging(0.961) TCGA-22-4596-01 12 48379593 48379593 C T COL2A1 Missense_Mutation p.R533Q 0.11 benign(0.288) TCGA-22-4596-01 12 49667102 49667102 A G TUBA1C 3'UTR 0.16 TCGA-22-4596-01 12 71016260 71016260 C A PTPRB Missense_Mutation p.E206D 0.08 tolerated_low_confidence(0.26) benign(0.047) TCGA-22-4596-01 13 45563399 45563399 C G NUFIP1 Missense_Mutation p.G58A 0.14 tolerated_low_confidence(0.21) benign(0.354) TCGA-22-4596-01 13 86369812 86369812 C T SLITRK6 Missense_Mutation p.D278N 0.14 tolerated(0.42) benign(0.01) TCGA-22-4596-01 14 102349870 102349870 C T PPP2R5C Silent p.I231I 0.07 TCGA-22-4596-01 14 105417053 105417053 C G AHNAK2 Missense_Mutation p.V1579L 0.06 probably_damaging(0.967) TCGA-22-4596-01 14 23600701 23600701 C A SLC7A8 Missense_Mutation p.R361L 0.12 tolerated(0.17) probably_damaging(0.999) TCGA-22-4596-01 14 24538367 24538367 G T LRRC16B Missense_Mutation p.R1335L 0.08 deleterious_low_confidence(0.01) unknown(0) TCGA-22-4596-01 14 60581581 60581581 A T PCNXL4 Missense_Mutation p.M51L 0.09 deleterious(0.02) benign(0.035) TCGA-22-4596-01 14 64692176 64692176 C G SYNE2 Missense_Mutation p.Q6886E 0.08 probably_damaging(0.995) TCGA-22-4596-01 14 74203855 74203855 G A ELMSAN1 Missense_Mutation p.P532L 0.06 deleterious(0) probably_damaging(0.999) TCGA-22-4596-01 14 81209525 81209525 T C CEP128 Silent p.Q900Q 0.06 TCGA-22-4596-01 14 90770444 90770444 T G NRDE2 Silent p.T280T 0.09 TCGA-22-4596-01 14 90770705 90770705 G T NRDE2 Silent p.S193S 0.09 TCGA-22-4596-01 15 35086898 35086898 C A ACTC1 Missense_Mutation p.G38C 0.06 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-22-4596-01 15 68582553 68582553 A G FEM1B Missense_Mutation p.D286G 0.05 deleterious(0.01) probably_damaging(0.913) TCGA-22-4596-01 15 87099474 87099474 G T AGBL1 Missense_Mutation p.E959D 0.18 tolerated_low_confidence(0.34) benign(0.018) TCGA-22-4596-01 16 12059216 12059216 A C TNFRSF17 Missense_Mutation p.E12A 0.22 deleterious(0) probably_damaging(0.945) TCGA-22-4596-01 16 19725446 19725446 C T KNOP1 Nonsense_Mutation p.W304* 0.08 TCGA-22-4596-01 16 20792084 20792084 C A ACSM3 Silent p.I229I 0.08 TCGA-22-4596-01 16 32077397 32077397 G T IGHV3OR16-9 Silent p.L4L 0.04 TCGA-22-4596-01 16 3611757 3611757 A T NLRC3 Missense_Mutation p.M701K 0.17 deleterious(0) benign(0.027) TCGA-22-4596-01 16 49764775 49764775 C T ZNF423 Missense_Mutation p.E62K 0.16 tolerated_low_confidence(0.09) benign(0.427) TCGA-22-4596-01 17 34264790 34264790 C T LYZL6 Silent p.S90S 0.08 TCGA-22-4596-01 17 36047353 36047353 C T HNF1B 3'UTR 0.09 TCGA-22-4596-01 17 43246869 43246869 A T HEXIM2 Missense_Mutation p.H185L 0.14 tolerated(0.24) benign(0.116) TCGA-22-4596-01 17 46670842 46670842 G T HOXB5 Missense_Mutation p.A68E 0.10 tolerated(0.1) benign(0.01) TCGA-22-4596-01 17 5984014 5984014 C T WSCD1 Silent p.L12L 0.09 TCGA-22-4596-01 17 61895597 61895597 A G DDX42 Missense_Mutation p.R886G 0.08 tolerated_low_confidence(0.17) benign(0.039) TCGA-22-4596-01 17 62551103 62551103 T C SMURF2 Missense_Mutation p.D540G 0.08 deleterious(0) possibly_damaging(0.688) TCGA-22-4596-01 18 13069847 13069847 C T CEP192 Silent p.C1722C 0.09 TCGA-22-4596-01 18 14105388 14105388 G T ZNF519 Missense_Mutation p.A384D 0.07 deleterious(0.01) possibly_damaging(0.535) TCGA-22-4596-01 18 51818389 51818389 G T POLI Missense_Mutation p.R462L 0.09 tolerated(0.5) benign(0.008) TCGA-22-4596-01 18 59221513 59221513 G A CDH20 Missense_Mutation p.R664H 0.04 tolerated(0.22) probably_damaging(0.975) TCGA-22-4596-01 19 19788791 19788791 C T ZNF101 Missense_Mutation p.A41V 0.06 tolerated(0.06) possibly_damaging(0.893) TCGA-22-4596-01 19 36135639 36135639 G A ETV2 Missense_Mutation p.R305H 0.11 deleterious(0) probably_damaging(1) TCGA-22-4596-01 19 36231312 36231312 C T IGFLR1 Missense_Mutation p.G104D 0.15 tolerated(0.16) benign(0.055) TCGA-22-4596-01 19 43698732 43698732 G T PSG4 Missense_Mutation p.P335T 0.08 deleterious(0.03) probably_damaging(1) TCGA-22-4596-01 19 56156023 56156023 G A ZNF581 Missense_Mutation p.R29H 0.11 deleterious(0.03) benign(0.432) TCGA-22-4596-01 19 5783160 5783160 C T PRR22 Silent p.P366P 0.22 TCGA-22-4596-01 19 7986367 7986367 G A SNAPC2 Silent p.V81V 0.17 TCGA-22-4596-01 19 9270847 9270847 G T ZNF317 Missense_Mutation p.G176C 0.08 tolerated(0.07) benign(0.198) TCGA-22-4596-01 1 12835707 12835707 G A PRAMEF12 Silent p.L103L 0.09 TCGA-22-4596-01 1 146747086 146747086 A C CHD1L Missense_Mutation p.N447T 0.03 deleterious(0.01) probably_damaging(0.934) TCGA-22-4596-01 1 152277213 152277213 T G FLG Silent p.S3383S 0.04 TCGA-22-4596-01 1 157804322 157804322 C T CD5L Missense_Mutation p.R198Q 0.03 tolerated(1) benign(0.001) TCGA-22-4596-01 1 157804326 157804326 C A CD5L Missense_Mutation p.G197C 0.04 deleterious(0) probably_damaging(0.999) TCGA-22-4596-01 1 16055228 16055228 G C PLEKHM2 Silent p.S662S 0.09 TCGA-22-4596-01 1 175372553 175372553 G T TNR Silent p.L233L 0.04 TCGA-22-4596-01 1 177249848 177249848 G T BRINP2 Silent p.L512L 0.09 TCGA-22-4596-01 1 183539973 183539973 A G NCF2 Missense_Mutation p.V204A 0.06 deleterious(0) benign(0.424) TCGA-22-4596-01 1 214557241 214557241 T C PTPN14 Missense_Mutation p.M653V 0.04 tolerated(0.28) benign(0.001) TCGA-22-4596-01 1 214815679 214815679 G A CENPF Missense_Mutation p.R1333K 0.04 benign(0.015) TCGA-22-4596-01 1 220970105 220970105 A G MARC1 Silent p.R190R 0.05 TCGA-22-4596-01 1 229460969 229460969 C A CCSAP 3'UTR 0.05 TCGA-22-4596-01 1 247835428 247835428 T A OR13G1 Nonsense_Mutation p.K306* 0.09 TCGA-22-4596-01 1 248309217 248309217 G T OR2M5 Missense_Mutation p.L256F 0.04 tolerated(0.17) possibly_damaging(0.71) TCGA-22-4596-01 1 248756620 248756620 A C OR2T10 Missense_Mutation p.F150L 0.03 tolerated(0.56) benign(0.03) TCGA-22-4596-01 1 40717141 40717141 A G TMCO2 Missense_Mutation p.N142D 0.05 tolerated_low_confidence(1) benign(0) TCGA-22-4596-01 1 66458703 66458703 C G PDE4B Intron 0.13 TCGA-22-4596-01 1 66458706 66458706 A C PDE4B Intron 0.13 TCGA-22-4596-01 1 67147695 67147695 C G SGIP1 Missense_Mutation p.P320A 0.11 tolerated_low_confidence(0.15) benign(0.04) TCGA-22-4596-01 1 93698151 93698151 G C CCDC18 Splice_Site p.X873_splice 0.11 TCGA-22-4596-01 20 47838004 47838004 G T DDX27 Missense_Mutation p.G68C 0.14 tolerated(0.05) possibly_damaging(0.606) TCGA-22-4596-01 20 62737604 62737604 A T NPBWR2 Missense_Mutation p.V194D 0.11 tolerated(0.25) probably_damaging(0.93) TCGA-22-4596-01 21 11038808 11038808 G T BAGE2 RNA 0.03 TCGA-22-4596-01 21 27484444 27484444 G A APP Missense_Mutation p.A26V 0.08 tolerated(0.32) unknown(0) TCGA-22-4596-01 22 17584454 17584454 G T IL17RA Missense_Mutation p.R278L 0.07 tolerated(0.08) benign(0.023) TCGA-22-4596-01 22 19119646 19119646 G C TSSK2 Missense_Mutation p.C245S 0.05 deleterious(0.02) possibly_damaging(0.542) TCGA-22-4596-01 2 125281935 125281935 C A CNTNAP5 Missense_Mutation p.N460K 0.06 tolerated(0.09) benign(0.012) TCGA-22-4596-01 2 141641396 141641396 G T LRP1B Missense_Mutation p.P1387T 0.05 possibly_damaging(0.876) TCGA-22-4596-01 2 166848252 166848252 T G SCN1A Missense_Mutation p.N1845H 0.04 deleterious(0) probably_damaging(1) TCGA-22-4596-01 2 218925019 218925019 G T CXCR2P1 RNA 0.17 TCGA-22-4596-01 2 220497089 220497089 G A SLC4A3 Missense_Mutation p.E383K 0.22 tolerated(0.14) benign(0.027) TCGA-22-4596-01 2 241569862 241569862 A G GPR35 Missense_Mutation p.S196G 0.08 tolerated(0.1) benign(0.007) TCGA-22-4596-01 2 50850481 50850481 C A NRXN1 Missense_Mutation p.D402Y 0.06 deleterious(0) probably_damaging(0.994) TCGA-22-4596-01 3 10979981 10979981 G A SLC6A11 Missense_Mutation p.G598S 0.18 tolerated(0.73) possibly_damaging(0.629) TCGA-22-4596-01 3 113659093 113659093 C G GRAMD1C Silent p.A603A 0.13 TCGA-22-4596-01 3 122145959 122145959 A G KPNA1 Missense_Mutation p.F497S 0.04 tolerated(0.05) probably_damaging(0.999) TCGA-22-4596-01 3 155652795 155652795 C T GMPS Silent p.R589R 0.11 TCGA-22-4596-01 3 164907868 164907868 G A SLITRK3 Missense_Mutation p.P251S 0.04 tolerated(0.57) probably_damaging(0.998) TCGA-22-4596-01 3 184800921 184800921 T C C3orf70 Silent p.E209E 0.09 TCGA-22-4596-01 3 44948557 44948557 G A TGM4 Missense_Mutation p.V398M 0.19 deleterious(0.03) probably_damaging(0.992) TCGA-22-4596-01 3 73432936 73432936 G A PDZRN3 Silent p.S927S 0.05 TCGA-22-4596-01 3 9477411 9477411 G T SETD5 Splice_Site p.X130_splice 0.20 TCGA-22-4596-01 4 114276503 114276503 C A ANK2 Missense_Mutation p.S2243R 0.06 probably_damaging(0.999) TCGA-22-4596-01 4 138452436 138452436 A T PCDH18 Missense_Mutation p.N269K 0.08 tolerated(0.05) probably_damaging(1) TCGA-22-4596-01 4 152681956 152681956 T A PET112 Intron 0.12 TCGA-22-4596-01 4 40245486 40245486 G T RHOH Missense_Mutation p.Q160H 0.21 deleterious(0) probably_damaging(0.995) TCGA-22-4596-01 4 70707826 70707826 T G SULT1E1 Splice_Site p.X258_splice 0.09 TCGA-22-4596-01 4 94376996 94376996 G C GRID2 Missense_Mutation p.V577L 0.10 tolerated(0.27) benign(0.17) TCGA-22-4596-01 5 112257870 112257870 C A REEP5 Missense_Mutation p.R6S 0.07 tolerated(0.09) benign(0.11) TCGA-22-4596-01 5 140236619 140236619 T C PCDHA10 Missense_Mutation p.M329T 0.23 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-22-4596-01 5 141018916 141018916 G A FCHSD1 3'UTR 0.12 TCGA-22-4596-01 5 149274815 149274815 G T PDE6A Nonsense_Mutation p.Y553* 0.07 TCGA-22-4596-01 5 150666813 150666813 G A SLC36A3 Silent p.I275I 0.08 TCGA-22-4596-01 5 155756566 155756566 G A SGCD 5'UTR 0.07 TCGA-22-4596-01 5 160018116 160018116 T A ATP10B Missense_Mutation p.M1199L 0.10 tolerated(0.37) benign(0.04) TCGA-22-4596-01 5 160061438 160061438 G T ATP10B Missense_Mutation p.T435K 0.16 deleterious(0) probably_damaging(1) TCGA-22-4596-01 5 161495041 161495041 A T GABRG2 Silent p.S12S 0.05 TCGA-22-4596-01 5 169098097 169098097 C A DOCK2 Silent p.I80I 0.07 TCGA-22-4596-01 5 35040696 35040696 A G AGXT2 Missense_Mutation p.M54T 0.09 tolerated(1) benign(0) TCGA-22-4596-01 5 40931223 40931223 T C C7 Silent p.N40N 0.08 TCGA-22-4596-01 5 65077132 65077132 G A NLN Missense_Mutation p.D236N 0.13 tolerated(0.07) benign(0.003) TCGA-22-4596-01 6 116757958 116757958 G A DSE Missense_Mutation p.R776H 0.05 deleterious_low_confidence(0.02) benign(0.406) TCGA-22-4596-01 6 123127472 123127472 T C SMPDL3A Silent p.F338F 0.15 TCGA-22-4596-01 6 133065323 133065323 G T VNN2 3'UTR 0.22 TCGA-22-4596-01 6 136599811 136599811 G T BCLAF1 Missense_Mutation p.P70T 0.03 deleterious_low_confidence(0) unknown(0) TCGA-22-4596-01 6 29365179 29365179 A T OR12D2 Nonsense_Mutation p.K235* 0.05 TCGA-22-4596-01 6 31896514 31896514 C T CFB Intron 0.13 TCGA-22-4596-01 7 100685655 100685655 G T MUC17 Missense_Mutation p.G3653V 0.16 benign(0.002) TCGA-22-4596-01 7 103130328 103130328 C A RELN Missense_Mutation p.W3208C 0.04 deleterious(0.02) possibly_damaging(0.682) TCGA-22-4596-01 7 108137043 108137043 C A PNPLA8 Missense_Mutation p.W537L 0.06 deleterious(0) possibly_damaging(0.759) TCGA-22-4596-01 7 116165136 116165136 T C CAV1 Missense_Mutation p.V7A 0.18 tolerated_low_confidence(0.29) benign(0.004) TCGA-22-4596-01 7 143701338 143701338 T C OR6B1 Silent p.F83F 0.07 TCGA-22-4596-01 7 150649663 150649663 G T KCNH2 Silent p.I469I 0.06 TCGA-22-4596-01 7 31867921 31867922 CA G PDE1C Frame_Shift_Del p.A484Lfs*5 0.09 TCGA-22-4596-01 7 40228100 40228100 G T SUGCT Missense_Mutation p.G85V 0.16 deleterious(0) probably_damaging(1) TCGA-22-4596-01 7 57194366 57194366 C A ZNF479 Silent p.L33L 0.14 TCGA-22-4596-01 7 70880977 70880977 T A WBSCR17 Missense_Mutation p.I231N 0.06 tolerated(0.38) possibly_damaging(0.785) TCGA-22-4596-01 7 88964602 88964602 T C ZNF804B Missense_Mutation p.I769T 0.09 tolerated(1) benign(0.003) TCGA-22-4596-01 7 92763240 92763240 G T SAMD9L Nonsense_Mutation p.S682* 0.16 TCGA-22-4596-01 7 94166973 94166973 A G CASD1 Missense_Mutation p.T345A 0.13 tolerated(0.61) benign(0.007) TCGA-22-4596-01 7 94539473 94539473 C T PPP1R9A Silent p.A16A 0.04 TCGA-22-4596-01 8 113364647 113364647 G C CSMD3 Missense_Mutation p.Q2085E 0.11 deleterious(0.04) possibly_damaging(0.758) TCGA-22-4596-01 8 116427215 116427215 T C TRPS1 Missense_Mutation p.E974G 0.13 deleterious(0) probably_damaging(0.997) TCGA-22-4596-01 8 131896879 131896879 G A ADCY8 Silent p.G680G 0.07 TCGA-22-4596-01 8 139606337 139606337 C A COL22A1 Missense_Mutation p.R1513L 0.18 unknown(0) TCGA-22-4596-01 8 14181671 14181671 G T SGCZ Missense_Mutation p.L93I 0.05 deleterious(0) possibly_damaging(0.572) TCGA-22-4596-01 8 144776740 144776740 A T ZNF707 3'UTR 0.18 TCGA-22-4596-01 8 3265550 3265550 T C CSMD1 Missense_Mutation p.I648V 0.06 benign(0.001) TCGA-22-4596-01 8 52287206 52287206 G A PXDNL Missense_Mutation p.L1215F 0.08 tolerated(0.54) possibly_damaging(0.791) TCGA-22-4596-01 8 67976627 67976627 G A CSPP1 5'UTR 0.12 TCGA-22-4596-01 8 93088255 93088255 C T RUNX1T1 Intron 0.03 TCGA-22-4596-01 8 99441227 99441227 T A KCNS2 Silent p.I340I 0.07 TCGA-22-4596-01 9 113170115 113170115 C T SVEP1 Missense_Mutation p.A2589T 0.04 benign(0.007) TCGA-22-4596-01 9 132632038 132632038 C G USP20 Missense_Mutation p.Q494E 0.04 tolerated(0.13) possibly_damaging(0.723) TCGA-22-4596-01 9 27561638 27561638 T C C9orf72 Missense_Mutation p.T204A 0.19 deleterious(0.01) benign(0.373) TCGA-22-4596-01 9 35074153 35074153 G A FANCG Silent p.A607A 0.04 TCGA-22-4596-01 9 77752481 77752481 G T OSTF1 Missense_Mutation p.A146S 0.10 tolerated(0.24) possibly_damaging(0.868) TCGA-22-4596-01 X 101972082 101972082 C T GPRASP2 Missense_Mutation p.S762L 0.05 deleterious(0) probably_damaging(0.987) TCGA-22-4596-01 X 106198168 106198168 C A MORC4 Missense_Mutation p.D554Y 0.03 deleterious(0) possibly_damaging(0.832) TCGA-22-4596-01 X 107381141 107381141 G T ATG4A Missense_Mutation p.A219S 0.03 tolerated(0.79) benign(0.026) TCGA-22-4596-01 X 107976805 107976805 T A IRS4 Missense_Mutation p.M924L 0.05 tolerated(0.1) unknown(0) TCGA-22-4596-01 X 108638609 108638609 A G GUCY2F Silent p.A795A 0.05 TCGA-22-4596-01 X 123787615 123787615 G T TENM1 Missense_Mutation p.A396E 0.05 tolerated_low_confidence(0.24) benign(0.157) TCGA-22-4596-01 X 129205023 129205023 C T ELF4 Silent p.R267R 0.04 TCGA-22-4596-01 X 142717380 142717380 C G SLITRK4 Silent p.G515G 0.04 TCGA-22-4596-01 X 16685818 16685818 T C CTPS2 Missense_Mutation p.I407V 0.09 tolerated(0.32) benign(0.003) TCGA-22-4596-01 X 36122799 36122799 T A CHDC2 Missense_Mutation p.C346S 0.07 tolerated(0.15) benign(0.194) TCGA-22-4596-01 X 47837081 47837081 A T ZNF182 Silent p.R135R 0.08 TCGA-22-4596-01 X 51637426 51637426 C T MAGED1 Missense_Mutation p.A9V 0.12 deleterious_low_confidence(0) unknown(0) TCGA-22-4596-01 X 64140031 64140031 C T ZC4H2 Missense_Mutation p.A110T 0.06 tolerated(0.62) benign(0.096) TCGA-22-4596-01 X 69828955 69828955 C A TEX11 Missense_Mutation p.W637L 0.04 deleterious(0) probably_damaging(0.999) TCGA-22-4596-01 X 86877322 86877322 T A KLHL4 Missense_Mutation p.F346I 0.06 deleterious(0) benign(0.364) TCGA-22-4599-01 10 102052796 102052796 G T PKD2L1 Missense_Mutation p.L597M 0.50 deleterious(0.05) possibly_damaging(0.542) TCGA-22-4599-01 10 104678750 104678750 C T CNNM2 Silent p.G171G 0.41 TCGA-22-4599-01 10 134886386 134886386 A G GPR123 Silent p.A140A 0.41 TCGA-22-4599-01 10 15573047 15573047 A T ITGA8 Splice_Site p.X994_splice 0.37 TCGA-22-4599-01 10 15702878 15702878 A G ITGA8 Silent p.Y297Y 0.35 TCGA-22-4599-01 10 17636217 17636217 T C PTPLA Silent p.A257A 0.17 TCGA-22-4599-01 10 27537699 27537699 T C RP11-85G18.6 Intron 0.43 TCGA-22-4599-01 10 46147483 46147483 T C ZFAND4 Splice_Site p.X87_splice 0.59 TCGA-22-4599-01 10 48388747 48388747 C T RBP3 Missense_Mutation p.E711K 0.50 tolerated(0.6) benign(0.292) TCGA-22-4599-01 10 50227712 50227712 C A VSTM4 Nonsense_Mutation p.E316* 0.45 TCGA-22-4599-01 10 52751280 52751280 C G PRKG1 Missense_Mutation p.P48A 0.50 tolerated(0.25) benign(0.001) TCGA-22-4599-01 10 76818229 76818229 G T DUPD1 Nonsense_Mutation p.S15* 0.48 TCGA-22-4599-01 10 87484343 87484343 C T GRID1 Missense_Mutation p.G542R 0.42 deleterious(0) probably_damaging(1) TCGA-22-4599-01 10 88197313 88197313 A C WAPAL Missense_Mutation p.L1187W 0.40 deleterious(0) probably_damaging(0.999) TCGA-22-4599-01 10 89720828 89720828 A - PTEN Frame_Shift_Del p.A328Qfs*16 0.31 TCGA-22-4599-01 11 100126584 100126584 C A CNTN5 Missense_Mutation p.P700T 0.21 deleterious(0) probably_damaging(1) TCGA-22-4599-01 11 101359755 101359755 T A TRPC6 Silent p.T402T 0.11 TCGA-22-4599-01 11 102595563 102595563 T C MMP8 Silent p.P8P 0.48 TCGA-22-4599-01 11 105923774 105923774 C A KBTBD3 Nonsense_Mutation p.G548* 0.27 TCGA-22-4599-01 11 116661456 116661457 - A APOA5 Frame_Shift_Ins p.V166Rfs*102 0.37 TCGA-22-4599-01 11 118110946 118110946 T C MPZL3 Missense_Mutation p.S74G 0.09 tolerated(0.07) benign(0.005) TCGA-22-4599-01 11 120998901 120998901 C A TECTA Missense_Mutation p.L739I 0.15 deleterious(0.01) possibly_damaging(0.497) TCGA-22-4599-01 11 12315632 12315632 T A MICALCL Silent p.G218G 0.31 TCGA-22-4599-01 11 124135456 124135456 C A OR8G5 Missense_Mutation p.P245H 0.25 deleterious(0) probably_damaging(0.997) TCGA-22-4599-01 11 124135457 124135457 C G OR8G5 Silent p.P245P 0.25 TCGA-22-4599-01 11 124252601 124252601 G T OR8B2 Silent p.T213T 0.24 TCGA-22-4599-01 11 124252884 124252884 G T OR8B2 Missense_Mutation p.A119E 0.43 deleterious_low_confidence(0) possibly_damaging(0.655) TCGA-22-4599-01 11 16010543 16010543 C A SOX6 Nonsense_Mutation p.G636* 0.22 TCGA-22-4599-01 11 17331130 17331130 G A NUCB2 Missense_Mutation p.D131N 0.19 tolerated(0.14) benign(0.008) TCGA-22-4599-01 11 22215035 22215035 G A ANO5 5'UTR 0.33 TCGA-22-4599-01 11 22646492 22646492 G T FANCF Missense_Mutation p.L289I 0.13 tolerated(0.25) probably_damaging(0.983) TCGA-22-4599-01 11 30033959 30033959 C A KCNA4 Silent p.R89R 0.37 TCGA-22-4599-01 11 36614556 36614556 G C RAG2 Missense_Mutation p.A388G 0.37 tolerated(0.3) possibly_damaging(0.559) TCGA-22-4599-01 11 44069984 44069984 G C ACCSL Missense_Mutation p.R133P 0.14 tolerated(0.25) benign(0.004) TCGA-22-4599-01 11 48239284 48239284 G A OR4B1 Missense_Mutation p.R308K 0.38 tolerated(0.96) benign(0) TCGA-22-4599-01 11 4903906 4903906 C T OR51T1 Silent p.S286S 0.21 TCGA-22-4599-01 11 4945280 4945280 G T OR51G1 Missense_Mutation p.P97H 0.32 tolerated(0.06) benign(0.001) TCGA-22-4599-01 11 4945281 4945281 G T OR51G1 Missense_Mutation p.P97T 0.31 deleterious(0.05) benign(0.001) TCGA-22-4599-01 11 5012677 5012677 T A MMP26 Silent p.P182P 0.40 TCGA-22-4599-01 11 5344956 5344956 G C OR51B2 Missense_Mutation p.T191S 0.29 tolerated(0.16) benign(0.219) TCGA-22-4599-01 11 55371530 55371530 C A OR4C11 Missense_Mutation p.C107F 0.39 deleterious(0.04) benign(0.019) TCGA-22-4599-01 11 55419153 55419153 C A OR4S2 Silent p.R258R 0.46 TCGA-22-4599-01 11 55419154 55419154 C A OR4S2 Missense_Mutation p.P259T 0.45 deleterious(0) probably_damaging(0.957) TCGA-22-4599-01 11 55433452 55433452 T A OR4C6 Silent p.A270A 0.16 TCGA-22-4599-01 11 55861250 55861250 C A OR8I2 Nonsense_Mutation p.S156* 0.21 TCGA-22-4599-01 11 56020637 56020637 G C OR5T3 Missense_Mutation p.S321T 0.09 deleterious(0.03) possibly_damaging(0.589) TCGA-22-4599-01 11 59211269 59211269 G A OR5A1 Missense_Mutation p.G210R 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-22-4599-01 11 6023408 6023408 G C OR56A4 Missense_Mutation p.P324R 0.20 deleterious(0) possibly_damaging(0.894) TCGA-22-4599-01 11 67160217 67160217 T G RAD9A Silent p.P66P 0.20 TCGA-22-4599-01 11 69950238 69950238 C A ANO1 Missense_Mutation p.S225Y 0.39 deleterious(0) probably_damaging(0.998) TCGA-22-4599-01 11 77404559 77404559 C A RSF1 Missense_Mutation p.C938F 0.42 deleterious(0) probably_damaging(1) TCGA-22-4599-01 11 78380569 78380569 G A TENM4 Missense_Mutation p.A2274V 0.18 deleterious(0.02) possibly_damaging(0.734) TCGA-22-4599-01 11 8494723 8494723 C A STK33 Missense_Mutation p.G109V 0.34 deleterious(0.01) benign(0.288) TCGA-22-4599-01 11 85425553 85425553 A G SYTL2 Intron 0.20 TCGA-22-4599-01 11 92087084 92087084 G A FAT3 Silent p.A602A 0.17 TCGA-22-4599-01 12 113599121 113599121 G T DDX54 Missense_Mutation p.D789E 0.61 tolerated(0.6) benign(0.001) TCGA-22-4599-01 12 113831701 113831701 G A SDS Silent p.F258F 0.57 TCGA-22-4599-01 12 121098054 121098054 C T CABP1 Silent p.C247C 0.12 TCGA-22-4599-01 12 123687280 123687280 C A MPHOSPH9 Missense_Mutation p.V406F 0.14 deleterious(0.02) possibly_damaging(0.68) TCGA-22-4599-01 12 133324531 133324531 C T ANKLE2 Missense_Mutation p.V373I 0.18 tolerated(0.1) benign(0.004) TCGA-22-4599-01 12 21196331 21196331 T A SLCO1B7 Missense_Mutation p.V217E 0.39 deleterious(0) possibly_damaging(0.894) TCGA-22-4599-01 12 21453281 21453281 C A SLCO1A2 Splice_Site p.X304_splice 0.27 TCGA-22-4599-01 12 2929370 2929370 G A ITFG2 Silent p.K175K 0.16 TCGA-22-4599-01 12 31241998 31241998 A G DDX11 Silent p.T235T 0.05 TCGA-22-4599-01 12 5021420 5021420 G T KCNA1 Missense_Mutation p.R292S 0.34 deleterious(0.01) possibly_damaging(0.765) TCGA-22-4599-01 12 53457811 53457811 C G TENC1 3'UTR 0.78 TCGA-22-4599-01 12 63964606 63964606 C G DPY19L2 Missense_Mutation p.M644I 0.44 deleterious(0) possibly_damaging(0.812) TCGA-22-4599-01 12 69265737 69265737 C G CPM Splice_Site p.X87_splice 0.59 TCGA-22-4599-01 12 7649411 7649411 G T CD163 Missense_Mutation p.S366Y 0.28 deleterious(0) probably_damaging(0.994) TCGA-22-4599-01 12 80730221 80730221 C G OTOGL Missense_Mutation p.S1534R 0.57 tolerated(0.24) possibly_damaging(0.708) TCGA-22-4599-01 12 9316787 9316787 A G PZP Silent p.Y852Y 0.35 TCGA-22-4599-01 12 93793177 93793177 C A NUDT4 3'UTR 0.17 TCGA-22-4599-01 12 96312661 96312661 T G CCDC38 Missense_Mutation p.K44T 0.54 deleterious(0) possibly_damaging(0.848) TCGA-22-4599-01 13 108862550 108862550 T A LIG4 Missense_Mutation p.E356V 0.17 deleterious(0.01) benign(0.219) TCGA-22-4599-01 13 19997065 19997065 A G TPTE2 3'UTR 0.28 TCGA-22-4599-01 13 25479961 25479961 C A CENPJ Missense_Mutation p.G739W 0.33 deleterious(0) probably_damaging(0.982) TCGA-22-4599-01 13 36049898 36049898 G A MAB21L1 Silent p.R126R 0.22 TCGA-22-4599-01 13 46358134 46358134 G A SIAH3 Missense_Mutation p.P65L 0.14 tolerated_low_confidence(0.23) benign(0.024) TCGA-22-4599-01 13 75915705 75915705 G T TBC1D4 Missense_Mutation p.A476D 0.34 deleterious(0) probably_damaging(0.999) TCGA-22-4599-01 13 76407256 76407256 A G LMO7 Missense_Mutation p.I774V 0.41 tolerated(1) benign(0.009) TCGA-22-4599-01 14 101201173 101201173 C A DLK1 Silent p.I364I 0.23 TCGA-22-4599-01 14 101201174 101201174 T G DLK1 Missense_Mutation p.F365V 0.23 deleterious(0.01) benign(0.26) TCGA-22-4599-01 14 104027168 104027168 A C BAG5 Missense_Mutation p.F153V 0.19 tolerated_low_confidence(0.22) benign(0.009) TCGA-22-4599-01 14 105411766 105411766 T A AHNAK2 Missense_Mutation p.D3341V 0.21 benign(0.042) TCGA-22-4599-01 14 20692761 20692762 - A OR11H6 Frame_Shift_Ins p.M299Nfs*11 0.16 TCGA-22-4599-01 14 22356168 22356168 G T TRAV12-2 Silent p.V9V 0.13 TCGA-22-4599-01 14 23884917 23884917 T C MYH7 Missense_Mutation p.E1693G 0.19 deleterious(0) possibly_damaging(0.861) TCGA-22-4599-01 14 24884692 24884693 - G NYNRIN Frame_Shift_Ins p.R1248Pfs*56 0.43 TCGA-22-4599-01 14 42360908 42360908 C A LRFN5 Nonsense_Mutation p.S614* 0.25 TCGA-22-4599-01 14 47426643 47426643 A C MDGA2 Missense_Mutation p.Y675D 0.16 tolerated(0.13) possibly_damaging(0.565) TCGA-22-4599-01 14 50559321 50559321 C T C14orf183 Missense_Mutation p.R14K 0.27 tolerated_low_confidence(0.58) benign(0.14) TCGA-22-4599-01 14 50799106 50799106 C T CDKL1 Silent p.Q281Q 0.23 TCGA-22-4599-01 14 55309786 55309786 G A GCH1 3'UTR 0.50 TCGA-22-4599-01 14 58605813 58605813 T A C14orf37 Missense_Mutation p.K88N 0.25 tolerated(0.15) possibly_damaging(0.607) TCGA-22-4599-01 14 65266561 65266561 G T SPTB Missense_Mutation p.T323N 0.21 tolerated(0.46) benign(0.003) TCGA-22-4599-01 14 92959967 92959967 G C SLC24A4 Missense_Mutation p.D622H 0.33 deleterious_low_confidence(0) possibly_damaging(0.631) TCGA-22-4599-01 14 95234802 95234802 T C GSC 3'UTR 0.23 TCGA-22-4599-01 15 27222257 27222257 G C GABRG3 Missense_Mutation p.L54F 0.48 deleterious(0) probably_damaging(0.998) TCGA-22-4599-01 15 28391416 28391416 C T HERC2 Missense_Mutation p.D3659N 0.51 probably_damaging(1) TCGA-22-4599-01 15 89400853 89400853 A T ACAN Missense_Mutation p.E1679D 0.03 tolerated(0.22) probably_damaging(0.997) TCGA-22-4599-01 15 91578496 91578496 C A AC068831.10 RNA 0.38 TCGA-22-4599-01 16 20494469 20494469 A G ACSM2A Silent p.S533S 0.49 TCGA-22-4599-01 16 2503520 2503520 C T CCNF Missense_Mutation p.S566L 0.26 deleterious(0) benign(0.246) TCGA-22-4599-01 16 25228740 25228740 C A AQP8 Silent p.L78L 0.57 TCGA-22-4599-01 16 3063428 3063428 T C CLDN9 Missense_Mutation p.L22P 0.47 deleterious(0) probably_damaging(0.994) TCGA-22-4599-01 16 68025838 68025838 C T DPEP2 Missense_Mutation p.G189S 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-22-4599-01 16 75263572 75263572 T A BCAR1 Missense_Mutation p.N863I 0.33 deleterious(0) probably_damaging(0.999) TCGA-22-4599-01 16 83998786 83998786 G T OSGIN1 Missense_Mutation p.W203L 0.49 tolerated(0.64) benign(0.11) TCGA-22-4599-01 16 8988925 8988925 C T USP7 Missense_Mutation p.G1001E 0.33 tolerated(0.36) benign(0.04) TCGA-22-4599-01 17 10364342 10364342 A G MYH4 Silent p.A346A 0.47 TCGA-22-4599-01 17 14673539 14673539 C G AC005863.1 RNA 0.30 TCGA-22-4599-01 17 3844354 3844354 G C ATP2A3 Missense_Mutation p.R671G 0.50 tolerated(0.13) benign(0.087) TCGA-22-4599-01 17 39023052 39023052 C T KRT12 Missense_Mutation p.M129I 0.29 deleterious(0) probably_damaging(0.996) TCGA-22-4599-01 17 39580822 39580822 C A KRT37 5'Flank 0.26 TCGA-22-4599-01 17 41610575 41610575 A G ETV4 Silent p.H175H 0.32 TCGA-22-4599-01 17 44851265 44851265 G C WNT3 Missense_Mutation p.L31V 0.15 tolerated(0.65) benign(0.004) TCGA-22-4599-01 17 56833427 56833427 C A PPM1E Silent p.R23R 0.44 TCGA-22-4599-01 17 61987119 61987119 G C CSHL1 Missense_Mutation p.F207L 0.29 deleterious(0) probably_damaging(0.953) TCGA-22-4599-01 17 72888777 72888777 G A FADS6 Missense_Mutation p.A77V 0.38 tolerated(0.6) benign(0.01) TCGA-22-4599-01 17 7577548 7577548 C A TP53 Missense_Mutation p.G245C 0.36 deleterious(0) probably_damaging(1) TCGA-22-4599-01 17 910418 910418 T A ABR Missense_Mutation p.D826V 0.54 deleterious(0) probably_damaging(0.973) TCGA-22-4599-01 18 14851805 14851805 G T ANKRD30B Nonsense_Mutation p.E1169* 0.25 TCGA-22-4599-01 18 22806795 22806795 G A ZNF521 Missense_Mutation p.L363F 0.21 tolerated_low_confidence(0.21) probably_damaging(0.925) TCGA-22-4599-01 18 31226214 31226214 G T ASXL3 Missense_Mutation p.E84D 0.35 probably_damaging(0.991) TCGA-22-4599-01 18 56203118 56203118 C - ALPK2 Frame_Shift_Del p.G1434Vfs*29 0.35 TCGA-22-4599-01 18 5891767 5891767 G T TMEM200C Missense_Mutation p.P99Q 0.29 tolerated(0.34) benign(0.161) TCGA-22-4599-01 18 59212338 59212338 G A CDH20 Missense_Mutation p.A537T 0.53 tolerated(0.15) probably_damaging(0.924) TCGA-22-4599-01 18 67614156 67614156 T A CD226 Missense_Mutation p.T66S 0.40 tolerated(0.7) benign(0.068) TCGA-22-4599-01 18 6961626 6961626 C T LAMA1 Missense_Mutation p.G2529R 0.18 tolerated(0.25) benign(0.004) TCGA-22-4599-01 19 1004634 1004634 G A GRIN3B Silent p.R378R 0.42 TCGA-22-4599-01 19 10610247 10610247 C A KEAP1 Missense_Mutation p.V155F 0.31 deleterious(0.01) probably_damaging(0.993) TCGA-22-4599-01 19 1255693 1255693 G T MIDN Missense_Mutation p.G377W 0.43 deleterious(0) probably_damaging(0.965) TCGA-22-4599-01 19 13335510 13335510 C T CACNA1A Missense_Mutation p.R1901H 0.17 benign(0.106) TCGA-22-4599-01 19 15839471 15839471 G T OR10H2 Missense_Mutation p.M206I 0.17 tolerated(0.26) benign(0.005) TCGA-22-4599-01 19 17311601 17311601 A G MYO9B Missense_Mutation p.N1509S 0.15 tolerated(0.29) probably_damaging(0.97) TCGA-22-4599-01 19 19337859 19337859 A G NCAN Missense_Mutation p.N546S 0.14 tolerated(0.07) probably_damaging(0.985) TCGA-22-4599-01 19 20728733 20728733 T A ZNF737 Missense_Mutation p.K92N 0.18 deleterious(0.04) possibly_damaging(0.848) TCGA-22-4599-01 19 21934627 21934627 T C ZNF100 Intron 0.35 TCGA-22-4599-01 19 22155187 22155187 A T ZNF208 Missense_Mutation p.H883Q 0.28 deleterious(0) unknown(0) TCGA-22-4599-01 19 22155416 22155416 C G ZNF208 Missense_Mutation p.C807S 0.18 deleterious(0) unknown(0) TCGA-22-4599-01 19 22235430 22235430 T A ZNF257 5'UTR 0.33 TCGA-22-4599-01 19 22574340 22574340 C A ZNF98 Missense_Mutation p.R566I 0.46 tolerated(0.37) benign(0) TCGA-22-4599-01 19 33695549 33695549 G T LRP3 Missense_Mutation p.R89L 0.20 deleterious(0.04) possibly_damaging(0.665) TCGA-22-4599-01 19 3382208 3382208 G A NFIC Missense_Mutation p.D177N 0.39 deleterious(0) possibly_damaging(0.521) TCGA-22-4599-01 19 3980012 3980013 CA - EEF2 Frame_Shift_Del p.C466Wfs*50 0.32 TCGA-22-4599-01 19 39964981 39964981 G A SUPT5H Missense_Mutation p.G920D 0.47 deleterious(0.01) benign(0.273) TCGA-22-4599-01 19 45899466 45899466 C T PPP1R13L Nonsense_Mutation p.W288* 0.55 TCGA-22-4599-01 19 50167826 50167826 C A IRF3 Intron 0.25 TCGA-22-4599-01 19 52023268 52023268 C A SIGLEC6 3'UTR 0.40 TCGA-22-4599-01 19 52521331 52521331 T C ZNF614 Silent p.V56V 0.43 TCGA-22-4599-01 19 55853361 55853361 C A SUV420H2 Silent p.T19T 0.46 TCGA-22-4599-01 19 56320536 56320536 C T NLRP11 Silent p.E480E 0.40 TCGA-22-4599-01 19 56465914 56465914 A G NLRP8 Missense_Mutation p.I164V 0.41 tolerated(0.75) benign(0.001) TCGA-22-4599-01 19 57089467 57089467 G T ZNF470 Missense_Mutation p.R557I 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-22-4599-01 19 57967343 57967343 C A VN1R1 Missense_Mutation p.C171F 0.39 tolerated(0.08) benign(0.306) TCGA-22-4599-01 19 815711 815711 C T LPPR3 Silent p.P72P 0.12 TCGA-22-4599-01 19 8436149 8436154 AGGTGC - ANGPTL4 In_Frame_Del p.K261_H263delinsN 0.17 TCGA-22-4599-01 1 100185123 100185123 C A FRRS1 Nonsense_Mutation p.G363* 0.49 TCGA-22-4599-01 1 10425653 10425653 G A KIF1B Missense_Mutation p.D1521N 0.46 tolerated(0.23) probably_damaging(0.991) TCGA-22-4599-01 1 111854968 111854968 G T CHIA Missense_Mutation p.W71L 0.50 deleterious(0) benign(0.325) TCGA-22-4599-01 1 120054257 120054257 C A HSD3B1 Missense_Mutation p.H93N 0.40 tolerated(0.29) benign(0.004) TCGA-22-4599-01 1 142700248 142700248 A C RP11-417J8.6 RNA 0.44 TCGA-22-4599-01 1 144856920 144856920 C T PDE4DIP Missense_Mutation p.A2189T 0.24 tolerated(0.15) benign(0.163) TCGA-22-4599-01 1 151105867 151105867 C G SEMA6C Missense_Mutation p.C661S 0.63 deleterious(0) benign(0.291) TCGA-22-4599-01 1 153177230 153177230 C G LELP1 Missense_Mutation p.P16R 0.50 deleterious_low_confidence(0.01) benign(0.154) TCGA-22-4599-01 1 153520929 153520929 G A S100A3 Silent p.A11A 0.50 TCGA-22-4599-01 1 158517052 158517052 G T OR6Y1 Missense_Mutation p.L282I 0.08 tolerated(0.62) benign(0.424) TCGA-22-4599-01 1 158590027 158590027 C A SPTA1 Missense_Mutation p.S2117I 0.26 deleterious(0) probably_damaging(0.999) TCGA-22-4599-01 1 158609675 158609675 C A SPTA1 Missense_Mutation p.E1620D 0.22 tolerated(0.9) benign(0.032) TCGA-22-4599-01 1 158612629 158612629 G T SPTA1 Missense_Mutation p.S1527Y 0.24 deleterious(0) probably_damaging(1) TCGA-22-4599-01 1 158906870 158906870 C T PYHIN1 Missense_Mutation p.P57L 0.48 tolerated(0.06) benign(0.143) TCGA-22-4599-01 1 161495719 161495719 C - HSPA6 Frame_Shift_Del p.K425Sfs*27 0.21 TCGA-22-4599-01 1 161642908 161642908 C A FCGR2B Missense_Mutation p.P179T 0.22 tolerated(0.37) benign(0.001) TCGA-22-4599-01 1 163122360 163122360 G T RGS5 Missense_Mutation p.Q122K 0.13 tolerated(0.91) benign(0.007) TCGA-22-4599-01 1 16332706 16332706 C T C1orf64 Silent p.S125S 0.48 TCGA-22-4599-01 1 172007553 172007553 A G DNM3 Missense_Mutation p.K315R 0.52 tolerated(0.2) benign(0.126) TCGA-22-4599-01 1 173839336 173839336 A C ZBTB37 Splice_Site 0.42 TCGA-22-4599-01 1 176659333 176659333 A G PAPPA2 Missense_Mutation p.H733R 0.51 deleterious(0.01) probably_damaging(1) TCGA-22-4599-01 1 176671778 176671778 T A PAPPA2 Missense_Mutation p.V1091D 0.55 deleterious(0) probably_damaging(0.982) TCGA-22-4599-01 1 183942789 183942789 C G COLGALT2 Silent p.R196R 0.12 TCGA-22-4599-01 1 184859326 184859326 G T FAM129A Silent p.R117R 0.25 TCGA-22-4599-01 1 196448338 196448338 T A KCNT2 Missense_Mutation p.T119S 0.08 tolerated(0.1) probably_damaging(0.965) TCGA-22-4599-01 1 197030958 197030958 A T F13B Missense_Mutation p.L136H 0.20 tolerated(0.15) probably_damaging(0.998) TCGA-22-4599-01 1 197030959 197030959 G A F13B Missense_Mutation p.L136F 0.20 tolerated(0.13) probably_damaging(0.998) TCGA-22-4599-01 1 197390734 197390734 C G CRB1 Missense_Mutation p.I592M 0.22 tolerated(0.19) possibly_damaging(0.897) TCGA-22-4599-01 1 197407761 197407761 G T CRB1 Missense_Mutation p.Q1278H 0.45 tolerated(0.13) benign(0.004) TCGA-22-4599-01 1 202698030 202698030 C G KDM5B 3'UTR 0.07 TCGA-22-4599-01 1 202843323 202843323 C T RABIF 3'Flank 0.36 TCGA-22-4599-01 1 21031124 21031124 C T KIF17 Silent p.S313S 0.27 TCGA-22-4599-01 1 216219889 216219889 G T USH2A Missense_Mutation p.S2070Y 0.43 benign(0.146) TCGA-22-4599-01 1 227079483 227079483 C T PSEN2 Missense_Mutation p.P337L 0.31 tolerated(0.22) benign(0.1) TCGA-22-4599-01 1 237550610 237550610 C T RYR2 Silent p.H202H 0.23 TCGA-22-4599-01 1 237604660 237604660 G C RYR2 Missense_Mutation p.M349I 0.27 possibly_damaging(0.828) TCGA-22-4599-01 1 237804280 237804280 G T RYR2 Missense_Mutation p.G2400V 0.36 probably_damaging(0.999) TCGA-22-4599-01 1 237872795 237872795 G C RYR2 Missense_Mutation p.K3386N 0.30 possibly_damaging(0.71) TCGA-22-4599-01 1 240966240 240966240 G T RGS7 Silent p.S441S 0.27 TCGA-22-4599-01 1 24144041 24144041 C A HMGCL Silent p.L59L 0.50 TCGA-22-4599-01 1 241929537 241929537 A G WDR64 Silent p.L645L 0.39 TCGA-22-4599-01 1 248004961 248004961 G A OR11L1 Missense_Mutation p.L80F 0.42 deleterious(0.03) benign(0.226) TCGA-22-4599-01 1 248005047 248005047 T G OR11L1 Missense_Mutation p.Q51P 0.22 tolerated(0.22) benign(0.175) TCGA-22-4599-01 1 248023976 248023976 C A TRIM58 Missense_Mutation p.Q160K 0.43 tolerated(1) benign(0.097) TCGA-22-4599-01 1 248039849 248039849 G C TRIM58 3'UTR 0.26 TCGA-22-4599-01 1 248085122 248085122 A T OR2T8 Missense_Mutation p.H268L 0.41 tolerated(0.06) benign(0.03) TCGA-22-4599-01 1 248685795 248685795 C A OR2G6 Missense_Mutation p.P283Q 0.32 deleterious(0) probably_damaging(0.998) TCGA-22-4599-01 1 27277975 27277975 G A C1orf172 Silent p.R299R 0.40 TCGA-22-4599-01 1 33292386 33292386 C T S100PBP Missense_Mutation p.P229L 0.45 tolerated(0.42) benign(0.005) TCGA-22-4599-01 1 34158654 34158654 C T CSMD2 Missense_Mutation p.E1270K 0.46 deleterious(0) possibly_damaging(0.812) TCGA-22-4599-01 1 34190206 34190206 C T CSMD2 Missense_Mutation p.S892N 0.47 deleterious(0.03) benign(0.103) TCGA-22-4599-01 1 34190229 34190229 G C CSMD2 Nonsense_Mutation p.Y884* 0.48 TCGA-22-4599-01 1 36564304 36564304 G C COL8A2 Missense_Mutation p.D326E 0.46 tolerated(0.51) unknown(0) TCGA-22-4599-01 1 44069850 44069850 G T PTPRF Silent p.P1009P 0.55 TCGA-22-4599-01 1 46812705 46812705 C T NSUN4 Missense_Mutation p.P184S 0.48 deleterious(0) probably_damaging(1) TCGA-22-4599-01 1 60359502 60359502 C T CYP2J2 Splice_Site p.X444_splice 0.04 TCGA-22-4599-01 1 68895341 68895341 C A RPE65 3'UTR 0.76 TCGA-22-4599-01 1 74492470 74492470 G T LRRIQ3 3'UTR 0.47 TCGA-22-4599-01 1 74832987 74832987 G T FPGT-TNNI3K Missense_Mutation p.D523Y 0.44 deleterious(0) possibly_damaging(0.906) TCGA-22-4599-01 1 84791382 84791382 A G SAMD13 Missense_Mutation p.Y53C 0.48 deleterious(0) probably_damaging(0.997) TCGA-22-4599-01 1 90493299 90493299 G T ZNF326 3'UTR 0.46 TCGA-22-4599-01 1 91844640 91844640 G T HFM1 Missense_Mutation p.H380N 0.50 tolerated(0.31) benign(0.009) TCGA-22-4599-01 1 99771997 99771997 C T LPPR4 Nonsense_Mutation p.R575* 0.45 TCGA-22-4599-01 20 13415742 13415742 A T TASP1 Missense_Mutation p.C349S 0.24 tolerated(0.22) benign(0.007) TCGA-22-4599-01 20 17594630 17594630 G C RRBP1 3'UTR 0.50 TCGA-22-4599-01 20 18296593 18296593 G A ZNF133 Silent p.R365R 0.20 TCGA-22-4599-01 20 1895862 1895862 T C SIRPA Missense_Mutation p.I66T 0.18 tolerated(0.08) possibly_damaging(0.862) TCGA-22-4599-01 20 25193991 25193991 A T ENTPD6 Silent p.T182T 0.25 TCGA-22-4599-01 20 30432260 30432260 G C FOXS1 3'UTR 0.21 TCGA-22-4599-01 20 368728 368728 T C TRIB3 Missense_Mutation p.L25S 0.27 tolerated(0.21) benign(0.011) TCGA-22-4599-01 20 44640932 44640932 G T MMP9 Missense_Mutation p.W385L 0.21 deleterious(0) probably_damaging(0.932) TCGA-22-4599-01 20 50221365 50221365 C A ATP9A Nonsense_Mutation p.E1000* 0.21 TCGA-22-4599-01 20 55027180 55027180 A T CASS4 Silent p.V316V 0.16 TCGA-22-4599-01 20 55027972 55027972 C T CASS4 Silent p.V580V 0.27 TCGA-22-4599-01 20 56136456 56136456 C T PCK1 5'UTR 0.40 TCGA-22-4599-01 20 57767486 57767486 G T ZNF831 Missense_Mutation p.R471L 0.15 tolerated(0.1) benign(0.386) TCGA-22-4599-01 20 5965480 5965480 C A MCM8 Missense_Mutation p.T596N 0.27 tolerated(0.24) benign(0.119) TCGA-22-4599-01 20 61525489 61525489 G A DIDO1 Missense_Mutation p.S877F 0.28 possibly_damaging(0.701) TCGA-22-4599-01 20 7866512 7866512 C A HAO1 Splice_Site p.X272_splice 0.20 TCGA-22-4599-01 21 10862994 10862994 C T IGHV1OR21-1 Missense_Mutation p.T97I 0.14 deleterious(0.03) possibly_damaging(0.888) TCGA-22-4599-01 21 10920131 10920131 C G TPTE Missense_Mutation p.D375H 0.10 deleterious(0) probably_damaging(0.976) TCGA-22-4599-01 21 10943022 10943022 T C TPTE Splice_Site p.X189_splice 0.08 TCGA-22-4599-01 21 11012973 11012973 G C TPTE RNA 0.04 TCGA-22-4599-01 21 31802740 31802740 G A KRTAP13-4 Silent p.R49R 0.20 TCGA-22-4599-01 21 31986073 31986073 A T KRTAP6-1 Missense_Mutation p.Y51N 0.19 unknown(0) TCGA-22-4599-01 21 45181245 45181245 C G PDXK 3'UTR 0.25 TCGA-22-4599-01 21 47841961 47841961 C T PCNT Missense_Mutation p.P2368S 0.21 possibly_damaging(0.857) TCGA-22-4599-01 21 48068369 48068369 G T PRMT2 Splice_Site p.X110_splice 0.24 TCGA-22-4599-01 22 20132768 20132768 A T ZDHHC8 Intron 0.17 TCGA-22-4599-01 22 24224728 24224728 C T SLC2A11 Silent p.C263C 0.17 TCGA-22-4599-01 22 24579183 24579183 G T SUSD2 Missense_Mutation p.V79L 0.12 tolerated(0.23) benign(0.008) TCGA-22-4599-01 22 25331384 25331384 G A TMEM211 Silent p.P102P 0.13 TCGA-22-4599-01 22 32546983 32546983 G T C22orf42 Missense_Mutation p.D163E 0.38 tolerated_low_confidence(0.56) benign(0.013) TCGA-22-4599-01 22 38122339 38122339 G C TRIOBP Missense_Mutation p.G1259A 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.851) TCGA-22-4599-01 2 105883761 105883761 C A TGFBRAP1 3'UTR 0.43 TCGA-22-4599-01 2 109411052 109411052 G T CCDC138 Missense_Mutation p.A151S 0.38 tolerated(0.78) possibly_damaging(0.567) TCGA-22-4599-01 2 111425421 111425421 T A BUB1 Silent p.S191S 0.31 TCGA-22-4599-01 2 120720314 120720314 C T PTPN4 Silent p.N801N 0.12 TCGA-22-4599-01 2 121746735 121746735 C G GLI2 Missense_Mutation p.T1082S 0.25 tolerated(0.81) benign(0.001) TCGA-22-4599-01 2 125261888 125261888 G T CNTNAP5 Missense_Mutation p.C360F 0.07 deleterious(0) probably_damaging(0.999) TCGA-22-4599-01 2 135711685 135711685 A G CCNT2 Missense_Mutation p.R554G 0.31 deleterious(0) benign(0.05) TCGA-22-4599-01 2 135893449 135893449 G C RAB3GAP1 Missense_Mutation p.G624R 0.17 deleterious(0.01) possibly_damaging(0.883) TCGA-22-4599-01 2 141128387 141128387 C A LRP1B Nonsense_Mutation p.E3634* 0.23 TCGA-22-4599-01 2 141128806 141128806 C G LRP1B Missense_Mutation p.C3606S 0.17 benign(0.415) TCGA-22-4599-01 2 141680640 141680640 C G LRP1B Missense_Mutation p.W1071C 0.23 probably_damaging(0.99) TCGA-22-4599-01 2 155555413 155555413 G C KCNJ3 Missense_Mutation p.K42N 0.22 tolerated(0.21) possibly_damaging(0.488) TCGA-22-4599-01 2 159499163 159499163 C T PKP4 Nonsense_Mutation p.R621* 0.06 TCGA-22-4599-01 2 163174644 163174644 T C IFIH1 Silent p.A58A 0.20 TCGA-22-4599-01 2 166870371 166870371 C A SCN1A Silent p.V1196V 0.13 TCGA-22-4599-01 2 179495637 179495637 C G TTN Missense_Mutation p.S14683T 0.20 TCGA-22-4599-01 2 179615578 179615578 T G TTN Intron 0.23 TCGA-22-4599-01 2 18112791 18112791 G T KCNS3 Missense_Mutation p.W172C 0.37 deleterious(0) probably_damaging(0.959) TCGA-22-4599-01 2 196689162 196689162 T A DNAH7 Silent p.L3036L 0.38 TCGA-22-4599-01 2 197183868 197183868 T A HECW2 Silent p.T582T 0.19 TCGA-22-4599-01 2 21230128 21230128 A T APOB Missense_Mutation p.F3204L 0.17 benign(0.002) TCGA-22-4599-01 2 219000421 219000421 C A CXCR2 Silent p.T299T 0.13 TCGA-22-4599-01 2 219877985 219877985 C T CCDC108 Missense_Mutation p.R1318Q 0.19 tolerated(0.09) benign(0.143) TCGA-22-4599-01 2 219903118 219903118 G T CCDC108 Silent p.A112A 0.22 TCGA-22-4599-01 2 224810030 224810030 C A WDFY1 5'UTR 0.44 TCGA-22-4599-01 2 225729367 225729367 T A DOCK10 Missense_Mutation p.H502L 0.11 deleterious(0.02) possibly_damaging(0.809) TCGA-22-4599-01 2 225729368 225729368 G T DOCK10 Missense_Mutation p.H502N 0.11 deleterious(0.01) benign(0.02) TCGA-22-4599-01 2 233322011 233322011 C A ALPI Silent p.L209L 0.25 TCGA-22-4599-01 2 242142807 242142807 C T ANO7 Silent p.V315V 0.40 TCGA-22-4599-01 2 24930139 24930139 C G NCOA1 Missense_Mutation p.N600K 0.31 tolerated(0.55) benign(0.114) TCGA-22-4599-01 2 24974895 24974895 C A NCOA1 Missense_Mutation p.P1251T 0.32 deleterious(0) probably_damaging(0.999) TCGA-22-4599-01 2 29222153 29222153 G C FAM179A Missense_Mutation p.K82N 0.30 tolerated(0.05) benign(0.398) TCGA-22-4599-01 2 29754882 29754882 C A ALK Silent p.V351V 0.37 TCGA-22-4599-01 2 31805985 31805985 G T SRD5A2 RNA 0.26 TCGA-22-4599-01 2 40656957 40656957 T C SLC8A1 Missense_Mutation p.E155G 0.04 deleterious(0) probably_damaging(1) TCGA-22-4599-01 2 43871901 43871901 A G PLEKHH2 Missense_Mutation p.Q30R 0.24 deleterious(0) probably_damaging(0.974) TCGA-22-4599-01 2 71740931 71740931 G T DYSF Silent p.G213G 0.33 TCGA-22-4599-01 2 71795349 71795349 G C DYSF Silent p.T915T 0.30 TCGA-22-4599-01 2 77745694 77745694 A T LRRTM4 Missense_Mutation p.L434H 0.30 deleterious(0) probably_damaging(0.987) TCGA-22-4599-01 2 77746911 77746911 C A LRRTM4 Silent p.T28T 0.26 TCGA-22-4599-01 2 79971682 79971682 C A CTNNA2 Missense_Mutation p.A91D 0.28 tolerated(0.45) benign(0.005) TCGA-22-4599-01 2 80136740 80136740 C G CTNNA2 Silent p.P291P 0.30 TCGA-22-4599-01 2 8870822 8870822 T A KIDINS220 3'UTR 0.42 TCGA-22-4599-01 2 98177143 98177143 G T ANKRD36B RNA 0.24 TCGA-22-4599-01 3 105586391 105586391 C G CBLB Missense_Mutation p.G11R 0.39 tolerated_low_confidence(0.06) probably_damaging(0.996) TCGA-22-4599-01 3 108070650 108070650 C A HHLA2 5'UTR 0.38 TCGA-22-4599-01 3 108572578 108572578 C A TRAT1 Missense_Mutation p.Q139K 0.10 tolerated(0.33) benign(0.034) TCGA-22-4599-01 3 108723703 108723703 C T MORC1 Nonsense_Mutation p.W682* 0.40 TCGA-22-4599-01 3 119134230 119134230 G T ARHGAP31 Missense_Mutation p.A1152S 0.06 tolerated(0.14) benign(0.146) TCGA-22-4599-01 3 120357315 120357315 A C HGD Silent p.P331P 0.39 TCGA-22-4599-01 3 125216675 125216675 T C SNX4 Intron 0.15 TCGA-22-4599-01 3 1269545 1269545 C A CNTN6 Missense_Mutation p.H76N 0.44 tolerated(0.2) benign(0.409) TCGA-22-4599-01 3 134644715 134644715 C A EPHB1 Missense_Mutation p.A39E 0.25 tolerated(0.74) benign(0.003) TCGA-22-4599-01 3 137893470 137893470 G A DBR1 Silent p.P56P 0.21 TCGA-22-4599-01 3 142178192 142178192 C G ATR Missense_Mutation p.C2409S 0.17 tolerated(0.38) benign(0.428) TCGA-22-4599-01 3 142257406 142257406 C A ATR Missense_Mutation p.V1215L 0.40 tolerated(0.08) possibly_damaging(0.658) TCGA-22-4599-01 3 147106642 147106642 G T ZIC4 3'UTR 0.33 TCGA-22-4599-01 3 147120521 147120521 C T ZIC4 Missense_Mutation p.E72K 0.36 tolerated_low_confidence(0.1) benign(0.056) TCGA-22-4599-01 3 147128383 147128383 C A ZIC1 Missense_Mutation p.Q162K 0.37 deleterious(0) possibly_damaging(0.905) TCGA-22-4599-01 3 147128470 147128470 G T ZIC1 Missense_Mutation p.A191S 0.36 tolerated(0.37) benign(0.002) TCGA-22-4599-01 3 179426630 179426630 G T USP13 Silent p.L230L 0.37 TCGA-22-4599-01 3 183885468 183885468 G T DVL3 Missense_Mutation p.W433C 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-22-4599-01 3 185979515 185979515 G T DGKG Missense_Mutation p.P441H 0.44 deleterious(0) probably_damaging(0.997) TCGA-22-4599-01 3 36893661 36893661 C A TRANK1 Missense_Mutation p.Q1531H 0.43 deleterious(0) probably_damaging(0.995) TCGA-22-4599-01 3 46542189 46542189 C A RTP3 Missense_Mutation p.Q167K 0.48 tolerated(0.21) benign(0.004) TCGA-22-4599-01 3 48671117 48671117 C A SLC26A6 Intron 0.51 TCGA-22-4599-01 3 49050270 49050270 C T WDR6 Missense_Mutation p.P465S 0.39 tolerated(0.72) benign(0.002) TCGA-22-4599-01 3 96706460 96706460 C A EPHA6 Missense_Mutation p.A246D 0.13 deleterious(0) probably_damaging(0.999) TCGA-22-4599-01 3 96706479 96706479 C A EPHA6 Silent p.T252T 0.14 TCGA-22-4599-01 3 98073466 98073466 A T OR5K4 Missense_Mutation p.M257L 0.16 deleterious(0.02) benign(0.049) TCGA-22-4599-01 4 110864470 110864470 G A EGF Missense_Mutation p.V130I 0.44 tolerated(1) benign(0.002) TCGA-22-4599-01 4 123150382 123150382 C T KIAA1109 Missense_Mutation p.A1010V 0.47 benign(0.022) TCGA-22-4599-01 4 123329103 123329103 C T ADAD1 Silent p.Y255Y 0.40 TCGA-22-4599-01 4 146435752 146435752 C A SMAD1 5'UTR 0.24 TCGA-22-4599-01 4 146823589 146823589 C A ZNF827 Silent p.P274P 0.49 TCGA-22-4599-01 4 149357300 149357300 G A NR3C2 Missense_Mutation p.S238F 0.42 tolerated_low_confidence(0.07) possibly_damaging(0.831) TCGA-22-4599-01 4 164394289 164394289 C T TKTL2 Missense_Mutation p.A200T 0.25 tolerated(0.84) benign(0.001) TCGA-22-4599-01 4 4303783 4303783 G T ZBTB49 Missense_Mutation p.G74C 0.47 deleterious(0) probably_damaging(1) TCGA-22-4599-01 4 46060535 46060535 G T GABRG1 Silent p.R244R 0.40 TCGA-22-4599-01 4 56471492 56471492 G A NMU Nonsense_Mutation p.Q129* 0.40 TCGA-22-4599-01 4 65145803 65145803 G A TECRL Missense_Mutation p.P360L 0.44 deleterious(0) probably_damaging(1) TCGA-22-4599-01 4 89526980 89526980 A G HERC3 Silent p.L2L 0.41 TCGA-22-4599-01 4 91389384 91389384 G T CCSER1 Splice_Site p.X535_splice 0.38 TCGA-22-4599-01 5 115339035 115339035 A T AQPEP Missense_Mutation p.L665F 0.43 tolerated(0.06) benign(0.119) TCGA-22-4599-01 5 134121181 134121181 C G DDX46 Missense_Mutation p.L457V 0.04 deleterious(0) probably_damaging(0.999) TCGA-22-4599-01 5 140515253 140515253 A G PCDHB5 Missense_Mutation p.I79M 0.42 tolerated_low_confidence(0.22) benign(0.021) TCGA-22-4599-01 5 140711782 140711782 A C PCDHGA1 Missense_Mutation p.T511P 0.49 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-22-4599-01 5 140731777 140731777 C G PCDHGB1 Silent p.L650L 0.42 TCGA-22-4599-01 5 156531691 156531691 C A HAVCR2 Missense_Mutation p.R155M 0.47 deleterious(0.02) benign(0.312) TCGA-22-4599-01 5 160059348 160059348 G A ATP10B Silent p.L470L 0.42 TCGA-22-4599-01 5 169018201 169018201 A T SPDL1 Silent p.G103G 0.44 TCGA-22-4599-01 5 172744980 172744980 C T STC2 Missense_Mutation p.G260D 0.25 deleterious_low_confidence(0.03) possibly_damaging(0.802) TCGA-22-4599-01 5 173317599 173317599 A G CPEB4 Missense_Mutation p.Y288C 0.41 deleterious_low_confidence(0.04) probably_damaging(0.94) TCGA-22-4599-01 5 178310363 178310363 G A ZNF354B Missense_Mutation p.G304S 0.49 deleterious(0.02) possibly_damaging(0.64) TCGA-22-4599-01 5 21751761 21751761 G T CDH12 3'UTR 0.27 TCGA-22-4599-01 5 24487930 24487930 C T CDH10 Missense_Mutation p.A737T 0.27 deleterious(0) probably_damaging(0.989) TCGA-22-4599-01 5 31508727 31508727 C A DROSHA Splice_Site p.X529_splice 0.33 TCGA-22-4599-01 5 33576935 33576935 G T ADAMTS12 Missense_Mutation p.Q1066K 0.38 tolerated(0.88) benign(0.001) TCGA-22-4599-01 5 35875689 35875689 A T IL7R Missense_Mutation p.K292N 0.22 tolerated(0.41) possibly_damaging(0.888) TCGA-22-4599-01 5 38489285 38489285 A T LIFR Missense_Mutation p.W744R 0.13 deleterious(0) probably_damaging(0.999) TCGA-22-4599-01 5 50683495 50683495 A T ISL1 Silent p.R130R 0.45 TCGA-22-4599-01 5 5473764 5473764 G C KIAA0947 Missense_Mutation p.G2106R 0.49 deleterious(0) probably_damaging(1) TCGA-22-4599-01 5 76249897 76249897 C T CRHBP Silent p.T73T 0.48 TCGA-22-4599-01 5 82815811 82815811 T C VCAN Silent p.L562L 0.05 TCGA-22-4599-01 5 90136422 90136422 C T GPR98 Missense_Mutation p.R5547C 0.25 possibly_damaging(0.876) TCGA-22-4599-01 6 101095237 101095237 C G ASCC3 Missense_Mutation p.V1115L 0.48 tolerated(0.13) benign(0.012) TCGA-22-4599-01 6 105177640 105177640 C T HACE1 Splice_Site p.X876_splice 0.07 TCGA-22-4599-01 6 108395464 108395464 C A OSTM1 Missense_Mutation p.R131L 0.39 deleterious(0.02) benign(0.079) TCGA-22-4599-01 6 121625726 121625726 G C TBC1D32 Missense_Mutation p.P272R 0.44 deleterious(0) probably_damaging(0.998) TCGA-22-4599-01 6 125231797 125231797 A G RP11-510H23.1 RNA 0.33 TCGA-22-4599-01 6 13182901 13182901 A T PHACTR1 Missense_Mutation p.D216V 0.39 deleterious(0.03) benign(0.184) TCGA-22-4599-01 6 13632623 13632623 A T RANBP9 Silent p.T642T 0.48 TCGA-22-4599-01 6 26033762 26033762 C A HIST1H2AB Missense_Mutation p.R12L 0.42 deleterious_low_confidence(0.02) unknown(0) TCGA-22-4599-01 6 26033764 26033764 A C HIST1H2AB Silent p.A11A 0.42 TCGA-22-4599-01 6 26392893 26392893 G A BTN2A2 Missense_Mutation p.G424R 0.51 deleterious(0) possibly_damaging(0.847) TCGA-22-4599-01 6 28294603 28294603 C G ZSCAN31 Missense_Mutation p.E187D 0.47 tolerated(0.45) benign(0) TCGA-22-4599-01 6 29588941 29588941 C A GABBR1 Missense_Mutation p.E420D 0.48 deleterious(0) probably_damaging(0.975) TCGA-22-4599-01 6 40359564 40359564 G T LRFN2 3'UTR 0.40 TCGA-22-4599-01 6 84233821 84233821 G T PRSS35 Nonsense_Mutation p.E221* 0.31 TCGA-22-4599-01 6 94066583 94066583 C A EPHA7 Missense_Mutation p.Q392H 0.49 tolerated(0.09) probably_damaging(0.999) TCGA-22-4599-01 7 107430025 107430025 T A SLC26A3 Nonsense_Mutation p.K227* 0.22 TCGA-22-4599-01 7 113519605 113519605 A G PPP1R3A Silent p.G514G 0.24 TCGA-22-4599-01 7 119915681 119915681 C T KCND2 Missense_Mutation p.T332I 0.44 tolerated(0.07) probably_damaging(0.98) TCGA-22-4599-01 7 120990455 120990455 A G FAM3C 3'UTR 0.13 TCGA-22-4599-01 7 123517197 123517197 C T HYAL4 Silent p.S478S 0.34 TCGA-22-4599-01 7 140051150 140051150 T C SLC37A3 Missense_Mutation p.I269V 0.46 tolerated(0.84) benign(0.002) TCGA-22-4599-01 7 150873210 150873210 C A ASB10 Missense_Mutation p.V465L 0.43 tolerated(0.12) benign(0.012) TCGA-22-4599-01 7 1513289 1513289 T G INTS1 Missense_Mutation p.N1957T 0.52 tolerated(0.39) benign(0.002) TCGA-22-4599-01 7 154561232 154561232 C A DPP6 Missense_Mutation p.T330N 0.59 tolerated(0.29) benign(0.327) TCGA-22-4599-01 7 154672604 154672604 G T DPP6 Missense_Mutation p.M695I 0.11 tolerated(0.23) benign(0.023) TCGA-22-4599-01 7 1589575 1589575 G C TMEM184A Missense_Mutation p.L187V 0.46 deleterious(0.01) probably_damaging(0.964) TCGA-22-4599-01 7 19748537 19748537 C A TWISTNB Missense_Mutation p.A35S 0.15 tolerated(0.18) benign(0.027) TCGA-22-4599-01 7 30496374 30496374 G A NOD1 Missense_Mutation p.A55V 0.52 tolerated(1) benign(0.099) TCGA-22-4599-01 7 31123762 31123762 G A ADCYAP1R1 Missense_Mutation p.G112E 0.20 deleterious(0.03) possibly_damaging(0.657) TCGA-22-4599-01 7 38475876 38475876 G C AMPH Missense_Mutation p.S377C 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-22-4599-01 7 38908827 38908827 C A VPS41 Missense_Mutation p.K29N 0.36 deleterious(0) probably_damaging(0.962) TCGA-22-4599-01 7 41740012 41740012 C A INHBA 5'UTR 0.45 TCGA-22-4599-01 7 44875239 44875239 T C H2AFV Missense_Mutation p.N72D 0.12 deleterious(0.02) benign(0.107) TCGA-22-4599-01 7 47454736 47454736 T C TNS3 Missense_Mutation p.H181R 0.22 deleterious(0) probably_damaging(1) TCGA-22-4599-01 7 51111274 51111274 G A COBL Silent p.T404T 0.07 TCGA-22-4599-01 7 57194380 57194380 C A ZNF479 Nonsense_Mutation p.E29* 0.25 TCGA-22-4599-01 7 8198194 8198194 C G ICA1 Missense_Mutation p.R223T 0.24 deleterious(0) probably_damaging(0.996) TCGA-22-4599-01 7 82784768 82784768 C A PCLO Missense_Mutation p.V397F 0.48 possibly_damaging(0.607) TCGA-22-4599-01 7 88424072 88424072 C A C7orf62 Missense_Mutation p.R62I 0.39 deleterious(0) benign(0.031) TCGA-22-4599-01 8 101078415 101078415 G - RGS22 Frame_Shift_Del p.P235Qfs*30 0.30 TCGA-22-4599-01 8 10470776 10470776 G T RP1L1 Missense_Mutation p.P278T 0.46 benign(0.445) TCGA-22-4599-01 8 105080743 105080743 C A RIMS2 Intron 0.33 TCGA-22-4599-01 8 105367345 105367345 C T DCSTAMP Silent p.L424L 0.13 TCGA-22-4599-01 8 109241385 109241385 C T EIF3E Missense_Mutation p.G171R 0.18 deleterious(0) probably_damaging(0.995) TCGA-22-4599-01 8 110439245 110439245 G C PKHD1L1 Missense_Mutation p.V954L 0.40 deleterious(0.04) benign(0.019) TCGA-22-4599-01 8 113275908 113275908 T C CSMD3 Silent p.V3274V 0.19 TCGA-22-4599-01 8 113293450 113293450 T A CSMD3 Missense_Mutation p.Q3154L 0.23 tolerated(0.17) benign(0.013) TCGA-22-4599-01 8 125072623 125072623 G A FER1L6 Intron 0.14 TCGA-22-4599-01 8 131226848 131226848 T G ASAP1 Missense_Mutation p.K120T 0.35 tolerated(0.33) probably_damaging(0.932) TCGA-22-4599-01 8 133764104 133764104 G C TMEM71 Missense_Mutation p.L81V 0.22 deleterious(0.04) possibly_damaging(0.883) TCGA-22-4599-01 8 139614365 139614365 C G COL22A1 Missense_Mutation p.G1393A 0.17 unknown(0) TCGA-22-4599-01 8 144803248 144803248 G A MAPK15 Silent p.V332V 0.25 TCGA-22-4599-01 8 146157623 146157623 C T ZNF16 Missense_Mutation p.D184N 0.35 tolerated(1) benign(0.001) TCGA-22-4599-01 8 20004839 20004839 C A SLC18A1 Missense_Mutation p.G465V 0.43 deleterious(0) probably_damaging(0.994) TCGA-22-4599-01 8 28196728 28196728 C G PNOC Missense_Mutation p.R100G 0.49 tolerated(0.05) probably_damaging(0.998) TCGA-22-4599-01 8 28196729 28196729 G A PNOC Missense_Mutation p.R100Q 0.50 tolerated(0.06) probably_damaging(0.996) TCGA-22-4599-01 8 42612075 42612075 T C CHRNA6 Missense_Mutation p.N124D 0.08 tolerated(0.11) probably_damaging(0.999) TCGA-22-4599-01 8 42924730 42924730 A T FNTA Missense_Mutation p.Q145L 0.06 tolerated(0.1) benign(0.091) TCGA-22-4599-01 8 51465633 51465633 C A SNTG1 Missense_Mutation p.A235D 0.13 deleterious(0) probably_damaging(0.992) TCGA-22-4599-01 8 67040638 67040638 C T TRIM55 Missense_Mutation p.H90Y 0.20 deleterious(0) possibly_damaging(0.756) TCGA-22-4599-01 8 68956792 68956792 G T PREX2 Missense_Mutation p.V304L 0.27 tolerated(0.17) probably_damaging(0.978) TCGA-22-4599-01 8 77767351 77767351 T A ZFHX4 Missense_Mutation p.Y2732N 0.20 probably_damaging(0.994) TCGA-22-4599-01 8 77767883 77767883 C - ZFHX4 Frame_Shift_Del p.P2910Qfs*27 0.29 TCGA-22-4599-01 8 77768456 77768456 G T ZFHX4 Missense_Mutation p.G3100V 0.39 probably_damaging(0.999) TCGA-22-4599-01 8 82606863 82606863 A T SLC10A5 Silent p.I115I 0.38 TCGA-22-4599-01 8 85686874 85686874 T C RALYL Missense_Mutation p.L119P 0.25 deleterious(0.01) benign(0.119) TCGA-22-4599-01 8 87738769 87738769 C G CNGB3 Missense_Mutation p.G110R 0.22 tolerated(0.54) benign(0.004) TCGA-22-4599-01 8 92406543 92406543 T A SLC26A7 3'UTR 0.15 TCGA-22-4599-01 8 92406544 92406544 A C SLC26A7 3'UTR 0.16 TCGA-22-4599-01 8 9605566 9605566 C T TNKS Silent p.Y892Y 0.40 TCGA-22-4599-01 9 100227254 100227256 GAG - TDRD7 In_Frame_Del p.E526del 0.18 TCGA-22-4599-01 9 105765446 105765446 A G CYLC2 Silent p.S27S 0.25 TCGA-22-4599-01 9 115652553 115652553 A G SLC46A2 Missense_Mutation p.Y137H 0.17 deleterious(0.03) benign(0.202) TCGA-22-4599-01 9 119976961 119976961 G A ASTN2 Nonsense_Mutation p.R231* 0.28 TCGA-22-4599-01 9 125047469 125047469 T C MRRF Missense_Mutation p.V121A 0.33 deleterious(0) possibly_damaging(0.816) TCGA-22-4599-01 9 127177690 127177690 C A PSMB7 Silent p.S5S 0.28 TCGA-22-4599-01 9 136270036 136270036 T C C9orf96 Missense_Mutation p.V619A 0.12 tolerated(1) benign(0.001) TCGA-22-4599-01 9 140351966 140351966 G A NSMF Missense_Mutation p.A174V 0.59 tolerated_low_confidence(0.05) benign(0.031) TCGA-22-4599-01 9 21239831 21239831 C T IFNA14 Missense_Mutation p.R35K 0.42 tolerated(0.43) benign(0.176) TCGA-22-4599-01 9 21971036 21971036 C A CDKN2A Missense_Mutation p.D108Y 0.74 deleterious(0) probably_damaging(1) TCGA-22-4599-01 9 37740469 37740469 C T FRMPD1 Silent p.S648S 0.47 TCGA-22-4599-01 9 95279975 95279975 C A ECM2 Missense_Mutation p.A159S 0.25 deleterious(0.03) benign(0.039) TCGA-22-4599-01 X 101858781 101858781 T A ARMCX5 3'UTR 0.42 TCGA-22-4599-01 X 105153423 105153423 A G NRK Missense_Mutation p.H598R 0.14 deleterious_low_confidence(0) possibly_damaging(0.698) TCGA-22-4599-01 X 122387382 122387382 A G GRIA3 Missense_Mutation p.D166G 0.51 deleterious(0.01) possibly_damaging(0.908) TCGA-22-4599-01 X 123525965 123525965 A G TENM1 Silent p.S1875S 0.45 TCGA-22-4599-01 X 130408582 130408582 C A IGSF1 Missense_Mutation p.G1253W 0.46 deleterious(0.01) probably_damaging(1) TCGA-22-4599-01 X 136649618 136649618 C A ZIC3 Silent p.I256I 0.40 TCGA-22-4599-01 X 138630563 138630563 T A F9 Missense_Mutation p.C145S 0.40 deleterious(0) probably_damaging(1) TCGA-22-4599-01 X 138711968 138711968 C A MCF2 Missense_Mutation p.M168I 0.50 tolerated(0.41) benign(0.027) TCGA-22-4599-01 X 17746069 17746069 C T NHS Silent p.R1260R 0.50 TCGA-22-4599-01 X 21990682 21990682 G A SMS Missense_Mutation p.V108M 0.38 tolerated(0.06) benign(0.061) TCGA-22-4599-01 X 22012471 22012471 G T SMS 3'UTR 0.49 TCGA-22-4599-01 X 27766293 27766293 C G DCAF8L2 Missense_Mutation p.C427W 0.46 deleterious(0) probably_damaging(0.998) TCGA-22-4599-01 X 30254770 30254771 - C MAGEB3 Frame_Shift_Ins p.R245Qfs*12 0.42 TCGA-22-4599-01 X 34962363 34962363 T G FAM47B Missense_Mutation p.L472R 0.45 deleterious(0.03) benign(0.015) TCGA-22-4599-01 X 65242376 65242376 G A VSIG4 Intron 0.45 TCGA-22-4599-01 X 67932797 67932797 G A STARD8 Missense_Mutation p.G41R 0.31 deleterious(0) probably_damaging(1) TCGA-22-4599-01 X 73962784 73962784 G C KIAA2022 Silent p.P536P 0.53 TCGA-22-4599-01 X 73962785 73962785 G T KIAA2022 Missense_Mutation p.P536H 0.54 deleterious(0) probably_damaging(1) TCGA-22-4599-01 X 73963889 73963889 C A KIAA2022 Missense_Mutation p.G168V 0.38 deleterious(0) possibly_damaging(0.603) TCGA-22-4599-01 X 78010584 78010584 A T LPAR4 Missense_Mutation p.E73V 0.47 tolerated(0.46) probably_damaging(0.999) TCGA-22-4599-01 X 83371242 83371242 A C RPS6KA6 Missense_Mutation p.W335G 0.35 deleterious(0) probably_damaging(0.966) TCGA-22-4599-01 X 91132998 91132998 G A PCDH11X Missense_Mutation p.G587S 0.52 tolerated(0.99) possibly_damaging(0.826) TCGA-22-4599-01 X 91873532 91873532 C A PCDH11X Missense_Mutation p.P1213T 0.48 deleterious_low_confidence(0.01) benign(0.002) TCGA-22-4601-01 10 118220511 118220511 C A PNLIPRP3 Missense_Mutation p.T200N 0.24 deleterious(0.01) possibly_damaging(0.87) TCGA-22-4601-01 10 124596492 124596492 C T CUZD1 Silent p.L224L 0.05 TCGA-22-4601-01 10 135345141 135345141 G T CYP2E1 Silent p.L130L 0.44 TCGA-22-4601-01 10 17130187 17130187 A T CUBN Missense_Mutation p.D641E 0.27 tolerated(0.82) benign(0.02) TCGA-22-4601-01 10 21112199 21112199 T C NEBL Missense_Mutation p.T634A 0.37 deleterious(0.02) benign(0.118) TCGA-22-4601-01 10 25878045 25878045 C A GPR158 Silent p.L621L 0.39 TCGA-22-4601-01 10 29581497 29581497 G C LYZL1 Silent p.T109T 0.15 TCGA-22-4601-01 10 46968622 46968622 G - SYT15 Frame_Shift_Del p.P105Rfs*64 0.18 TCGA-22-4601-01 10 50374829 50374829 A G C10orf128 Intron 0.38 TCGA-22-4601-01 10 50725112 50725112 C A ERCC6-PGBD3 Missense_Mutation p.D485Y 0.33 deleterious(0) unknown(0) TCGA-22-4601-01 10 5435992 5435992 T C TUBAL3 Missense_Mutation p.T277A 0.46 tolerated_low_confidence(1) benign(0.021) TCGA-22-4601-01 10 61932103 61932103 G A ANK3 Missense_Mutation p.T814I 0.41 probably_damaging(0.999) TCGA-22-4601-01 10 62553719 62553719 A G CDK1 Missense_Mutation p.I294V 0.07 tolerated(0.39) benign(0.008) TCGA-22-4601-01 10 92675931 92675931 A G ANKRD1 Silent p.D216D 0.37 TCGA-22-4601-01 10 95987096 95987096 G A PLCE1 Missense_Mutation p.A615T 0.05 deleterious(0.04) probably_damaging(0.943) TCGA-22-4601-01 11 105732909 105732909 A C GRIA4 Missense_Mutation p.E216A 0.39 deleterious(0.01) possibly_damaging(0.539) TCGA-22-4601-01 11 117329603 117329603 G C DSCAML1 Missense_Mutation p.I1205M 0.27 tolerated(0.07) possibly_damaging(0.511) TCGA-22-4601-01 11 124121094 124121094 C A OR8G1 Missense_Mutation p.S224R 0.31 deleterious_low_confidence(0.03) benign(0.093) TCGA-22-4601-01 11 128680961 128680961 T C FLI1 3'UTR 0.37 TCGA-22-4601-01 11 15994598 15994598 A C SOX6 Silent p.T728T 0.30 TCGA-22-4601-01 11 3078590 3078590 T C CARS Missense_Mutation p.D3G 0.60 tolerated_low_confidence(1) benign(0) TCGA-22-4601-01 11 3249739 3249739 G C MRGPRE Silent p.T96T 0.17 TCGA-22-4601-01 11 5411481 5411481 C G OR51M1 Missense_Mutation p.H285D 0.45 deleterious(0) probably_damaging(0.948) TCGA-22-4601-01 11 55579262 55579262 G A OR5L1 Missense_Mutation p.C107Y 0.32 tolerated(0.24) benign(0.005) TCGA-22-4601-01 11 5602719 5602719 C A OR52B6 Missense_Mutation p.H205N 0.28 deleterious(0) benign(0.085) TCGA-22-4601-01 11 5809819 5809819 G T OR52N1 Nonsense_Mutation p.C76* 0.34 TCGA-22-4601-01 11 58189942 58189942 A T OR5B2 Missense_Mutation p.S265T 0.38 deleterious_low_confidence(0.02) possibly_damaging(0.654) TCGA-22-4601-01 11 64825641 64825641 G T NAALADL1 Missense_Mutation p.D89E 0.45 deleterious(0) benign(0.265) TCGA-22-4601-01 11 65325130 65325130 C A LTBP3 Missense_Mutation p.D101Y 0.37 deleterious(0) possibly_damaging(0.879) TCGA-22-4601-01 11 71238460 71238460 C A KRTAP5-7 Silent p.P38P 0.37 TCGA-22-4601-01 11 73811639 73811639 C T C2CD3 Missense_Mutation p.R888Q 0.06 tolerated(0.3) benign(0.02) TCGA-22-4601-01 11 73825470 73825470 G C C2CD3 Missense_Mutation p.S563R 0.38 tolerated(0.11) benign(0.087) TCGA-22-4601-01 11 7509427 7509427 A G OLFML1 Missense_Mutation p.I67V 0.44 tolerated(0.65) benign(0.001) TCGA-22-4601-01 11 7817568 7817568 G A OR5P2 Missense_Mutation p.H308Y 0.44 tolerated_low_confidence(1) benign(0) TCGA-22-4601-01 11 85429964 85429964 C A SYTL2 Intron 0.44 TCGA-22-4601-01 11 94731717 94731717 G A KDM4D Missense_Mutation p.G394E 0.19 tolerated(0.3) benign(0.008) TCGA-22-4601-01 12 100166842 100166842 G A ANKS1B Missense_Mutation p.S329L 0.05 deleterious(0) possibly_damaging(0.835) TCGA-22-4601-01 12 110342594 110342594 G T TCHP Missense_Mutation p.R151L 0.32 deleterious(0) probably_damaging(0.99) TCGA-22-4601-01 12 20876025 20876025 T C SLCO1C1 Silent p.D341D 0.33 TCGA-22-4601-01 12 21457502 21457502 T C SLCO1A2 Missense_Mutation p.T150A 0.37 tolerated(0.31) benign(0.004) TCGA-22-4601-01 12 2968732 2968732 G A FOXM1 Missense_Mutation p.P493L 0.10 deleterious(0) possibly_damaging(0.885) TCGA-22-4601-01 12 40422284 40422284 C G SLC2A13 Silent p.P248P 0.04 TCGA-22-4601-01 12 53170493 53170493 C A KRT76 Missense_Mutation p.A195S 0.28 deleterious(0) probably_damaging(0.999) TCGA-22-4601-01 12 53693498 53693498 C T C12orf10 5'UTR 0.33 TCGA-22-4601-01 12 57573260 57573260 G A LRP1 Silent p.V1629V 0.32 TCGA-22-4601-01 12 6182863 6182863 G A VWF Missense_Mutation p.P307S 0.37 tolerated(0.19) probably_damaging(0.991) TCGA-22-4601-01 12 62960174 62960174 A G MON2 Missense_Mutation p.K1423E 0.42 tolerated(0.68) benign(0.026) TCGA-22-4601-01 12 7635988 7635988 C T CD163 Silent p.K1021K 0.43 TCGA-22-4601-01 13 44433997 44433997 C A CCDC122 Missense_Mutation p.M122I 0.71 tolerated(0.09) benign(0.009) TCGA-22-4601-01 13 48934227 48934227 A - RB1 Frame_Shift_Del p.K228Nfs*36 0.40 TCGA-22-4601-01 13 58208864 58208864 C G PCDH17 Silent p.V728V 0.61 TCGA-22-4601-01 14 19553594 19553594 A - POTEG Frame_Shift_Del p.K60Rfs*32 0.14 TCGA-22-4601-01 14 42357009 42357009 C T LRFN5 Missense_Mutation p.S394F 0.62 deleterious(0.03) possibly_damaging(0.851) TCGA-22-4601-01 14 69787482 69787482 C G GALNT16 Missense_Mutation p.Q78E 0.64 tolerated(0.69) benign(0.003) TCGA-22-4601-01 14 71444635 71444635 C T PCNX Silent p.S527S 0.06 TCGA-22-4601-01 14 74824463 74824463 G - VRTN Frame_Shift_Del p.G328Afs*47 0.51 TCGA-22-4601-01 14 77948969 77948969 C T ISM2 Silent p.S223S 0.25 TCGA-22-4601-01 15 31329971 31329971 G T TRPM1 Silent p.I855I 0.38 TCGA-22-4601-01 15 43991168 43991168 C T CKMT1A Intron 0.19 TCGA-22-4601-01 15 45848168 45848168 G C RP11-96O20.2 5'Flank 0.29 TCGA-22-4601-01 15 50212548 50212548 C A ATP8B4 Missense_Mutation p.K606N 0.33 tolerated(0.24) benign(0.112) TCGA-22-4601-01 15 50549709 50549709 G A HDC Silent p.N118N 0.34 TCGA-22-4601-01 15 52718104 52718104 T A MYO5A Silent p.A126A 0.32 TCGA-22-4601-01 15 70351006 70351006 C G TLE3 Missense_Mutation p.G305A 0.30 tolerated(0.78) benign(0.001) TCGA-22-4601-01 15 90996157 90996157 G A IQGAP1 Missense_Mutation p.R438Q 0.05 tolerated(0.65) benign(0) TCGA-22-4601-01 16 19236095 19236095 A G SYT17 Missense_Mutation p.Y388C 0.42 deleterious(0) probably_damaging(0.979) TCGA-22-4601-01 16 2289938 2289938 C TA ECI1 3'UTR 0.42 TCGA-22-4601-01 16 3274470 3274470 G A ZNF200 Nonsense_Mutation p.R204* 0.40 TCGA-22-4601-01 16 53636053 53636053 T C RPGRIP1L Missense_Mutation p.T1295A 0.36 deleterious(0) possibly_damaging(0.77) TCGA-22-4601-01 16 66620911 66620911 C T CMTM2 Silent p.N152N 0.40 TCGA-22-4601-01 16 66918558 66918558 G C PDP2 Missense_Mutation p.R124P 0.25 deleterious(0) possibly_damaging(0.88) TCGA-22-4601-01 16 84271000 84271000 A G KCNG4 Missense_Mutation p.M31T 0.36 tolerated(0.45) benign(0.001) TCGA-22-4601-01 17 10441034 10441034 G T MYH2 Missense_Mutation p.T512K 0.33 tolerated(0.06) benign(0.005) TCGA-22-4601-01 17 21319631 21319631 G T KCNJ12 Missense_Mutation p.R326L 0.10 deleterious(0.01) probably_damaging(1) TCGA-22-4601-01 17 27447713 27447713 T C MYO18A Missense_Mutation p.N550S 0.06 tolerated(0.62) probably_damaging(0.999) TCGA-22-4601-01 17 27958425 27958425 T C SSH2 Missense_Mutation p.K1236E 0.35 deleterious(0.04) benign(0.021) TCGA-22-4601-01 17 33679610 33679610 T A SLFN11 Missense_Mutation p.Y824F 0.32 tolerated(0.1) benign(0.135) TCGA-22-4601-01 17 34079872 34079872 C T GAS2L2 5'UTR 0.05 TCGA-22-4601-01 17 42478442 42478442 C A GPATCH8 Missense_Mutation p.D335Y 0.39 deleterious(0.01) probably_damaging(0.943) TCGA-22-4601-01 17 42635963 42635963 C T FZD2 Missense_Mutation p.R303C 0.33 deleterious(0.01) possibly_damaging(0.697) TCGA-22-4601-01 17 5433898 5433898 T C NLRP1 Silent p.P1141P 0.31 TCGA-22-4601-01 17 59668102 59668102 C G NACA2 Missense_Mutation p.G147A 0.39 tolerated(0.28) possibly_damaging(0.47) TCGA-22-4601-01 17 7367112 7367112 T A ZBTB4 Missense_Mutation p.S397C 0.71 benign(0.184) TCGA-22-4601-01 17 7367123 7367123 C A ZBTB4 Missense_Mutation p.G393V 0.72 probably_damaging(0.972) TCGA-22-4601-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.74 deleterious(0) probably_damaging(0.998) TCGA-22-4601-01 17 76497814 76497814 G A DNAH17-AS1 3'UTR 0.37 TCGA-22-4601-01 17 7667312 7667312 C T DNAH2 Silent p.L1048L 0.37 TCGA-22-4601-01 17 77758942 77758942 C T CBX2 3'UTR 0.30 TCGA-22-4601-01 17 80059581 80059581 G C FASN 5'Flank 0.33 TCGA-22-4601-01 17 9923208 9923208 C T GAS7 Missense_Mutation p.G64R 0.40 tolerated_low_confidence(0.65) benign(0.001) TCGA-22-4601-01 19 12691342 12691342 G A ZNF490 Missense_Mutation p.S516F 0.68 tolerated(0.12) benign(0.152) TCGA-22-4601-01 19 15061013 15061013 A T SLC1A6 Silent p.A563A 0.69 TCGA-22-4601-01 19 37835540 37835540 A G HKR1 5'UTR 0.41 TCGA-22-4601-01 19 39114783 39114783 C T EIF3K Silent p.T75T 0.46 TCGA-22-4601-01 19 51471320 51471320 C A KLK6 Splice_Site p.X14_splice 0.31 TCGA-22-4601-01 19 52919741 52919741 G T ZNF528 Nonsense_Mutation p.E546* 0.35 TCGA-22-4601-01 19 53959562 53959562 A G ZNF761 RNA 0.46 TCGA-22-4601-01 19 54496091 54496091 G A CACNG6 5'UTR 0.32 TCGA-22-4601-01 19 56160217 56160217 G C CCDC106 5'UTR 0.65 TCGA-22-4601-01 19 56701255 56701255 G T ZSCAN5B Missense_Mutation p.R477S 0.37 tolerated(0.7) benign(0.015) TCGA-22-4601-01 19 8601932 8601932 G T MYO1F Missense_Mutation p.A567D 0.68 deleterious(0) probably_damaging(0.974) TCGA-22-4601-01 19 9968059 9968059 T A OLFM2 Missense_Mutation p.R154W 0.72 deleterious(0) possibly_damaging(0.827) TCGA-22-4601-01 1 114184638 114184638 C T MAGI3 Missense_Mutation p.T489I 0.05 tolerated(0.13) possibly_damaging(0.709) TCGA-22-4601-01 1 145473733 145473733 G C ANKRD34A Missense_Mutation p.K135N 0.62 deleterious(0) probably_damaging(0.979) TCGA-22-4601-01 1 150970185 150970185 A T FAM63A Missense_Mutation p.L463Q 0.51 deleterious(0) probably_damaging(1) TCGA-22-4601-01 1 154947193 154947193 G A CKS1B 5'UTR 0.38 TCGA-22-4601-01 1 155206051 155206051 G C GBA Missense_Mutation p.S403R 0.43 deleterious(0) probably_damaging(0.988) TCGA-22-4601-01 1 156845973 156845973 G T NTRK1 Nonsense_Mutation p.E535* 0.37 TCGA-22-4601-01 1 157555965 157555965 A C FCRL4 Silent p.T376T 0.37 TCGA-22-4601-01 1 159175595 159175595 C A DARC Missense_Mutation p.S124R 0.40 tolerated(0.44) benign(0.203) TCGA-22-4601-01 1 161201164 161201164 A G NR1I3 Missense_Mutation p.F217L 0.34 deleterious(0.01) possibly_damaging(0.628) TCGA-22-4601-01 1 175956108 175956108 C G RFWD2 Missense_Mutation p.A702P 0.06 deleterious(0) probably_damaging(0.996) TCGA-22-4601-01 1 180832869 180832869 G T XPR1 Silent p.V509V 0.33 TCGA-22-4601-01 1 203148478 203148478 G T CHI3L1 3'UTR 0.77 TCGA-22-4601-01 1 238050087 238050087 G C ZP4 Missense_Mutation p.R275G 0.67 deleterious(0) probably_damaging(0.996) TCGA-22-4601-01 1 247836257 247836257 G T OR13G1 Silent p.L29L 0.75 TCGA-22-4601-01 1 64669744 64669744 G A UBE2U Missense_Mutation p.R4K 0.39 tolerated(0.09) benign(0.186) TCGA-22-4601-01 1 70385455 70385455 C T LRRC7 Intron 0.33 TCGA-22-4601-01 1 70587550 70587550 C G LRRC7 Missense_Mutation p.Q1532E 0.12 tolerated(0.4) probably_damaging(0.926) TCGA-22-4601-01 1 82452690 82452709 CAGCTCCTGTATTTAACTCA - LPHN2 Intron 0.16 TCGA-22-4601-01 1 9790422 9790422 C A CLSTN1 3'UTR 0.40 TCGA-22-4601-01 20 21689252 21689252 G A PAX1 Missense_Mutation p.G325S 0.41 tolerated_low_confidence(1) benign(0.006) TCGA-22-4601-01 20 2291706 2291706 G - TGM3 Frame_Shift_Del p.E158Kfs*16 0.37 TCGA-22-4601-01 20 35684596 35684596 C T RBL1 Missense_Mutation p.C439Y 0.18 tolerated(0.12) probably_damaging(0.981) TCGA-22-4601-01 20 37620141 37620141 G T DHX35 Silent p.P165P 0.29 TCGA-22-4601-01 20 3778334 3778334 C A CDC25B Missense_Mutation p.S89Y 0.18 deleterious(0.05) possibly_damaging(0.713) TCGA-22-4601-01 20 43386757 43386757 G T RIMS4 Missense_Mutation p.P103Q 0.31 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-22-4601-01 20 45801445 45801445 G T EYA2 Missense_Mutation p.W376C 0.42 deleterious(0) probably_damaging(0.998) TCGA-22-4601-01 21 11026763 11026763 G T BAGE2 RNA 0.11 TCGA-22-4601-01 21 31802908 31802908 G T KRTAP13-4 Silent p.L105L 0.42 TCGA-22-4601-01 21 31971168 31971177 TAGTTTCCGT C KRTAP6-2 In_Frame_Del p.Y6_Y9delinsC 0.29 TCGA-22-4601-01 21 34025600 34025600 C G SYNJ1 Missense_Mutation p.E997Q 0.32 tolerated(0.24) benign(0.031) TCGA-22-4601-01 21 45706975 45706975 C - AIRE Frame_Shift_Del p.A142Rfs*5 0.29 TCGA-22-4601-01 21 47627403 47627403 T A LSS Missense_Mutation p.E469V 0.38 deleterious(0.01) benign(0.051) TCGA-22-4601-01 22 24573530 24573530 G A CABIN1 Silent p.E2088E 0.15 TCGA-22-4601-01 22 24574123 24574123 G A CABIN1 Missense_Mutation p.E2208K 0.09 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-22-4601-01 22 24574135 24574135 G C CABIN1 Missense_Mutation p.D2212H 0.09 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-22-4601-01 22 24580888 24580888 C A SUSD2 Missense_Mutation p.S254R 0.19 deleterious(0.03) probably_damaging(0.917) TCGA-22-4601-01 22 44585083 44585083 G A PARVG Missense_Mutation p.V113M 0.31 deleterious(0.04) benign(0.378) TCGA-22-4601-01 2 113737695 113737695 G A IL36G Silent p.K90K 0.41 TCGA-22-4601-01 2 168102982 168102982 C T XIRP2 Missense_Mutation p.L1694F 0.29 probably_damaging(1) TCGA-22-4601-01 2 170055374 170055374 T C LRP2 Missense_Mutation p.I2834V 0.32 benign(0.162) TCGA-22-4601-01 2 179184992 179184992 G C OSBPL6 Intron 0.06 TCGA-22-4601-01 2 179611917 179611917 T C TTN Intron 0.26 TCGA-22-4601-01 2 210880974 210880974 C A RPE Intron 0.54 TCGA-22-4601-01 2 220473376 220473376 C G STK11IP Missense_Mutation p.L570V 0.57 deleterious(0) probably_damaging(0.99) TCGA-22-4601-01 2 226273595 226273595 A T NYAP2 5'UTR 0.65 TCGA-22-4601-01 2 231106201 231106201 A C SP140 Missense_Mutation p.Q163H 0.65 tolerated(0.1) probably_damaging(0.922) TCGA-22-4601-01 2 25095475 25095475 C T ADCY3 Silent p.E263E 0.42 TCGA-22-4601-01 2 27855502 27855502 G A GPN1 Silent p.V119V 0.03 TCGA-22-4601-01 2 7027089 7027089 A G RSAD2 Missense_Mutation p.I178V 0.63 tolerated(0.59) benign(0.075) TCGA-22-4601-01 2 80646650 80646650 C A CTNNA2 Missense_Mutation p.A405D 0.65 deleterious(0) probably_damaging(0.962) TCGA-22-4601-01 2 96958793 96958793 T G SNRNP200 Missense_Mutation p.T693P 0.42 deleterious(0) probably_damaging(0.986) TCGA-22-4601-01 3 113169255 113169255 G A SPICE1 Nonsense_Mutation p.Q751* 0.76 TCGA-22-4601-01 3 183056620 183056620 A T MCF2L2 Missense_Mutation p.Y152N 0.03 deleterious(0) possibly_damaging(0.492) TCGA-22-4601-01 3 186510376 186510376 C A RFC4 Missense_Mutation p.R193I 0.30 deleterious(0) probably_damaging(0.996) TCGA-22-4601-01 3 19961433 19961433 G T EFHB Missense_Mutation p.N296K 0.57 deleterious(0.03) benign(0.109) TCGA-22-4601-01 3 36570437 36570437 G T STAC Missense_Mutation p.G357V 0.58 deleterious(0) probably_damaging(1) TCGA-22-4601-01 3 50340387 50340387 T C HYAL1 Translation_Start_Site p.M1? 0.86 deleterious_low_confidence(0.04) benign(0.031) TCGA-22-4601-01 3 62451077 62451077 C T CADPS Missense_Mutation p.E1201K 0.03 deleterious(0.01) benign(0.305) TCGA-22-4601-01 3 89391048 89391048 C T EPHA3 Nonsense_Mutation p.Q372* 0.72 TCGA-22-4601-01 4 126411376 126411376 G T FAT4 Missense_Mutation p.A4467S 0.43 probably_damaging(0.993) TCGA-22-4601-01 4 169195106 169195106 G A DDX60 Silent p.V811V 0.08 TCGA-22-4601-01 4 183676285 183676285 A G TENM3 Missense_Mutation p.I1589V 0.38 tolerated(0.28) benign(0.001) TCGA-22-4601-01 4 54876181 54876181 A G CHIC2 3'UTR 0.40 TCGA-22-4601-01 4 5853143 5853143 C T CRMP1 Missense_Mutation p.D292N 0.04 tolerated(0.11) probably_damaging(0.982) TCGA-22-4601-01 5 140572692 140572692 G A PCDHB10 Missense_Mutation p.M189I 0.08 tolerated_low_confidence(0.1) benign(0) TCGA-22-4601-01 5 140710767 140710767 C A PCDHGA1 Silent p.L172L 0.62 TCGA-22-4601-01 5 145383666 145383666 G A SH3RF2 Missense_Mutation p.E232K 0.05 deleterious(0.02) probably_damaging(0.988) TCGA-22-4601-01 5 159996670 159996670 C T ATP10B Silent p.V1257V 0.58 TCGA-22-4601-01 5 160721318 160721318 A G GABRB2 Missense_Mutation p.S437P 0.09 tolerated(0.1) benign(0.007) TCGA-22-4601-01 5 2749025 2749025 T A IRX2 Missense_Mutation p.D266V 0.25 deleterious(0.01) benign(0.283) TCGA-22-4601-01 5 35955751 35955751 T C UGT3A1 Missense_Mutation p.K431E 0.32 tolerated(0.17) benign(0.38) TCGA-22-4601-01 5 35966003 35966003 G A UGT3A1 Missense_Mutation p.L110F 0.36 tolerated(1) benign(0.012) TCGA-22-4601-01 5 41941379 41941379 G A FBXO4 Missense_Mutation p.R387K 0.05 tolerated_low_confidence(0.3) benign(0.001) TCGA-22-4601-01 5 59284455 59284455 G A PDE4D Silent p.R44R 0.70 TCGA-22-4601-01 5 95087983 95087983 G A RHOBTB3 Missense_Mutation p.S204N 0.69 deleterious(0.05) benign(0.138) TCGA-22-4601-01 6 102247544 102247544 G A GRIK2 Missense_Mutation p.D325N 0.58 deleterious(0) probably_damaging(0.987) TCGA-22-4601-01 6 109225492 109225492 G A ARMC2 Missense_Mutation p.G303R 0.66 tolerated(0.09) benign(0.063) TCGA-22-4601-01 6 131222122 131222122 T A EPB41L2 Silent p.A376A 0.69 TCGA-22-4601-01 6 138607837 138607837 G C KIAA1244 Splice_Site p.X857_splice 0.04 TCGA-22-4601-01 6 26271155 26271155 C G HIST1H3G 3'UTR 0.33 TCGA-22-4601-01 6 28219789 28219789 C G ZKSCAN4 5'UTR 0.49 TCGA-22-4601-01 6 29080597 29080597 G T OR2J3 Missense_Mutation p.W310C 0.24 tolerated(0.18) benign(0.004) TCGA-22-4601-01 6 47754339 47754339 C T OPN5 Silent p.I73I 0.07 TCGA-22-4601-01 6 6002585 6002585 C G NRN1 Splice_Site p.X67_splice 0.28 TCGA-22-4601-01 6 70049312 70049312 C T BAI3 Silent p.S1125S 0.40 TCGA-22-4601-01 6 87968709 87968709 C G ZNF292 Missense_Mutation p.Q1788E 0.10 tolerated_low_confidence(0.19) benign(0.008) TCGA-22-4601-01 6 88854114 88854123 ACGCATACAC - CNR1 Frame_Shift_Del p.V291Tfs*15 0.42 TCGA-22-4601-01 7 103124226 103124226 G A RELN Missense_Mutation p.P3352L 0.41 deleterious(0) benign(0.103) TCGA-22-4601-01 7 142111515 142111515 C G TRBV5-7 Missense_Mutation p.R74T 0.06 tolerated(0.45) benign(0.051) TCGA-22-4601-01 7 143771467 143771467 C T OR2A25 Missense_Mutation p.S52F 0.34 tolerated(0.49) benign(0.021) TCGA-22-4601-01 7 143771729 143771729 C T OR2A25 Silent p.V139V 0.35 TCGA-22-4601-01 7 143771835 143771835 C T OR2A25 Missense_Mutation p.H175Y 0.28 deleterious(0.01) probably_damaging(1) TCGA-22-4601-01 7 154595609 154595609 C T DPP6 Silent p.T481T 0.55 TCGA-22-4601-01 7 19765275 19765275 G T TMEM196 Silent p.S107S 0.54 TCGA-22-4601-01 7 28857735 28857735 G A CREB5 Silent p.L434L 0.22 TCGA-22-4601-01 7 55268990 55268990 C T EGFR Missense_Mutation p.P1019L 0.61 deleterious(0) probably_damaging(0.998) TCGA-22-4601-01 7 81340811 81340811 A - HGF Frame_Shift_Del p.I477Kfs*4 0.30 TCGA-22-4601-01 8 104054576 104054576 G T ATP6V1C1 Silent p.T47T 0.26 TCGA-22-4601-01 8 139658927 139658927 T G COL22A1 Splice_Site p.X1150_splice 0.31 TCGA-22-4601-01 8 61707586 61707586 A C CHD7 Missense_Mutation p.K713T 0.34 probably_damaging(0.968) TCGA-22-4601-01 8 93017188 93017188 C A RUNX1T1 Intron 0.52 TCGA-22-4601-01 9 104356829 104356829 C G PPP3R2 Silent p.T128T 0.64 TCGA-22-4601-01 9 120475813 120475813 C A TLR4 Silent p.G469G 0.30 TCGA-22-4601-01 9 18826299 18826299 G T ADAMTSL1 Missense_Mutation p.V1318F 0.68 deleterious(0) possibly_damaging(0.851) TCGA-22-4601-01 9 18826395 18826395 C A ADAMTSL1 Missense_Mutation p.L1350M 0.09 tolerated(0.27) benign(0.141) TCGA-22-4601-01 9 33676397 33676398 CT - PTENP1 RNA 0.46 TCGA-22-4601-01 X 105153117 105153117 C G NRK Missense_Mutation p.S496C 0.37 tolerated(0.14) benign(0.163) TCGA-22-4601-01 X 105855305 105855305 C A CXorf57 5'UTR 0.31 TCGA-22-4601-01 X 107402738 107402738 C A COL4A6 Missense_Mutation p.C1590F 0.32 benign(0.026) TCGA-22-4601-01 X 107431174 107431174 T C COL4A6 Silent p.G558G 0.30 TCGA-22-4601-01 X 108921307 108921307 C A ACSL4 Missense_Mutation p.L321F 0.30 deleterious(0) probably_damaging(1) TCGA-22-4601-01 X 123787591 123787591 A T TENM1 Missense_Mutation p.I404N 0.31 deleterious(0) benign(0.411) TCGA-22-4601-01 X 123839017 123839017 C A TENM1 Silent p.V287V 0.30 TCGA-22-4601-01 X 132888123 132888123 G T GPC3 Missense_Mutation p.Q140K 0.34 deleterious(0.02) benign(0.098) TCGA-22-4601-01 X 135474460 135474460 C T GPR112 Nonsense_Mutation p.Q2661* 0.31 TCGA-22-4601-01 X 138630608 138630608 G A F9 Missense_Mutation p.G160R 0.12 deleterious(0) probably_damaging(1) TCGA-22-4601-01 X 142716937 142716937 G T SLITRK4 Missense_Mutation p.S663Y 0.28 deleterious(0) benign(0.424) TCGA-22-4601-01 X 152861517 152861517 C T FAM58A Missense_Mutation p.G79S 0.27 tolerated(0.13) benign(0.285) TCGA-22-4601-01 X 17739652 17739652 A G NHS Missense_Mutation p.Q315R 0.30 deleterious(0) possibly_damaging(0.562) TCGA-22-4601-01 X 23886727 23886727 C A APOO Missense_Mutation p.G124V 0.35 deleterious(0) probably_damaging(0.993) TCGA-22-4601-01 X 23886748 23886748 A C APOO Missense_Mutation p.I117S 0.34 deleterious(0) probably_damaging(0.938) TCGA-22-4601-01 X 24006149 24006149 G T KLHL15 Missense_Mutation p.N568K 0.44 deleterious(0.01) probably_damaging(0.954) TCGA-22-4601-01 X 30849528 30849528 G C TAB3 3'UTR 0.35 TCGA-22-4601-01 X 35820287 35820287 T C MAGEB16 5'UTR 0.28 TCGA-22-4601-01 X 37699873 37699873 G T DYNLT3 Silent p.T102T 0.46 TCGA-22-4601-01 X 48549500 48549500 G A WAS Missense_Mutation p.E486K 0.23 deleterious_low_confidence(0) unknown(0) TCGA-22-4601-01 X 48837632 48837632 C T GRIPAP1 Missense_Mutation p.R642H 0.29 benign(0.045) TCGA-22-4601-01 X 48891648 48891648 C A TFE3 Splice_Site p.X335_splice 0.30 TCGA-22-4601-01 X 48891649 48891649 C T TFE3 Missense_Mutation p.E335K 0.30 deleterious(0.02) benign(0) TCGA-22-4601-01 X 49029810 49029810 C A PLP2 Missense_Mutation p.H109N 0.37 tolerated(0.27) benign(0.001) TCGA-22-4601-01 X 49068355 49068355 C T CACNA1F Intron 0.09 TCGA-22-4601-01 X 54956998 54956998 G T TRO Missense_Mutation p.G1281C 0.36 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-22-4601-01 X 55172681 55172681 G T FAM104B Missense_Mutation p.P63T 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-22-4601-01 X 62917068 62917068 C A ARHGEF9 Silent p.L166L 0.41 TCGA-22-4601-01 X 64723017 64723017 G A ZC3H12B Silent p.E813E 0.28 TCGA-22-4601-01 X 65259879 65259879 T A VSIG4 5'UTR 0.39 TCGA-22-4601-01 X 65417678 65417678 G A HEPH Missense_Mutation p.G606D 0.38 deleterious(0) probably_damaging(1) TCGA-22-4601-01 X 70145715 70145715 C G SLC7A3 Missense_Mutation p.R603T 0.33 tolerated(0.68) benign(0.002) TCGA-22-4601-01 X 74742797 74742797 G T ZDHHC15 Silent p.S21S 0.31 TCGA-22-4601-01 X 74742798 74742798 G T ZDHHC15 Missense_Mutation p.S21Y 0.31 tolerated(0.37) benign(0.004) TCGA-22-4601-01 X 89177357 89177357 T A TGIF2LX Missense_Mutation p.N91K 0.06 deleterious(0.01) probably_damaging(0.992) TCGA-22-4601-01 X 89177358 89177358 T A TGIF2LX Missense_Mutation p.L92M 0.06 deleterious(0) probably_damaging(0.998) TCGA-22-4601-01 X 89177376 89177376 T A TGIF2LX Missense_Mutation p.S98T 0.35 tolerated(0.2) probably_damaging(0.973) TCGA-22-4601-01 X 9864198 9864198 C A SHROOM2 Silent p.G750G 0.34 TCGA-22-4604-01 10 107022249 107022249 G A SORCS3 Missense_Mutation p.G1202R 0.25 tolerated(0.17) benign(0.325) TCGA-22-4604-01 10 113913245 113913245 G A GPAM 3'UTR 0.19 TCGA-22-4604-01 10 114063031 114063031 C G TECTB Missense_Mutation p.H317Q 0.05 tolerated_low_confidence(0.24) benign(0) TCGA-22-4604-01 10 125804267 125804267 G T CHST15 Missense_Mutation p.H239N 0.07 deleterious(0.03) benign(0.056) TCGA-22-4604-01 10 18828262 18828262 G A CACNB2 Missense_Mutation p.R531H 0.28 tolerated_low_confidence(0.09) probably_damaging(0.932) TCGA-22-4604-01 10 25886855 25886855 G T GPR158 Missense_Mutation p.R767L 0.25 deleterious(0) probably_damaging(0.989) TCGA-22-4604-01 10 26581459 26581459 C T GAD2 Silent p.I484I 0.33 TCGA-22-4604-01 10 65225203 65225203 G A JMJD1C Intron 0.23 TCGA-22-4604-01 10 67680123 67680123 C A CTNNA3 Missense_Mutation p.V885F 0.20 deleterious(0) unknown(0) TCGA-22-4604-01 10 72518000 72518000 C T ADAMTS14 Missense_Mutation p.P1049L 0.20 tolerated(0.43) benign(0.15) TCGA-22-4604-01 10 76854389 76854389 T C DUSP13 3'Flank 0.26 TCGA-22-4604-01 10 97779134 97779134 T A CC2D2B Intron 0.23 TCGA-22-4604-01 11 111249997 111249997 G C POU2AF1 5'UTR 0.10 TCGA-22-4604-01 11 120983873 120983873 G T TECTA Silent p.A193A 0.29 TCGA-22-4604-01 11 123847930 123847930 C A OR10S1 Nonsense_Mutation p.E157* 0.26 TCGA-22-4604-01 11 130297558 130297558 C T ADAMTS8 Silent p.T208T 0.21 TCGA-22-4604-01 11 18467792 18467792 C T LDHC Missense_Mutation p.S249F 0.25 deleterious(0) probably_damaging(0.999) TCGA-22-4604-01 11 46703649 46703651 TTG - ARHGAP1 In_Frame_Del p.N133del 0.50 TCGA-22-4604-01 11 4842752 4842752 G C OR51F2 Missense_Mutation p.C46S 0.26 tolerated(0.06) probably_damaging(0.989) TCGA-22-4604-01 11 49831897 49831897 A T RP11-707M1.1 RNA 0.24 TCGA-22-4604-01 11 5462437 5462437 A T OR51I1 Missense_Mutation p.M103K 0.29 deleterious(0) probably_damaging(0.972) TCGA-22-4604-01 11 5462447 5462447 G A OR51I1 Silent p.L100L 0.35 TCGA-22-4604-01 11 55541396 55541396 C A OR5D13 Silent p.L161L 0.27 TCGA-22-4604-01 11 55594807 55594807 C T OR5L2 Missense_Mutation p.T38M 0.27 deleterious(0.01) benign(0.066) TCGA-22-4604-01 11 55659263 55659263 T C TRIM51 3'UTR 0.22 TCGA-22-4604-01 11 56185240 56185240 G A OR5R1 Missense_Mutation p.L157F 0.24 deleterious(0.02) probably_damaging(1) TCGA-22-4604-01 11 58035120 58035120 G T OR10W1 Missense_Mutation p.H71N 0.26 tolerated(0.13) benign(0.011) TCGA-22-4604-01 11 58274929 58274929 A T OR5B21 Missense_Mutation p.F217Y 0.26 deleterious_low_confidence(0) possibly_damaging(0.793) TCGA-22-4604-01 11 59480685 59480685 G A OR10V1 Missense_Mutation p.L212F 0.26 tolerated(1) benign(0.013) TCGA-22-4604-01 11 59631502 59631502 G T TCN1 Nonsense_Mutation p.S46* 0.09 TCGA-22-4604-01 11 60164080 60164080 C A MS4A14 Missense_Mutation p.A10E 0.25 tolerated(0.47) benign(0.001) TCGA-22-4604-01 11 60164081 60164081 A T MS4A14 Silent p.A10A 0.25 TCGA-22-4604-01 11 62656110 62656110 G C SLC3A2 Missense_Mutation p.R614P 0.27 tolerated(0.12) benign(0.101) TCGA-22-4604-01 11 65482308 65482308 G T KAT5 Missense_Mutation p.R319L 0.27 tolerated(0.09) benign(0.371) TCGA-22-4604-01 11 66333633 66333633 C T CTSF Missense_Mutation p.E243K 0.04 deleterious(0) probably_damaging(0.998) TCGA-22-4604-01 11 6891727 6891727 C A OR10A2 Silent p.R248R 0.27 TCGA-22-4604-01 11 70281197 70281197 G C CTTN Missense_Mutation p.G491R 0.24 deleterious(0) probably_damaging(1) TCGA-22-4604-01 11 73716885 73716885 A C UCP3 Missense_Mutation p.F144C 0.22 deleterious(0) probably_damaging(0.994) TCGA-22-4604-01 11 76062405 76062405 G T PRKRIR Missense_Mutation p.Q597K 0.27 tolerated(0.33) benign(0.017) TCGA-22-4604-01 11 86157526 86157526 G C ME3 Missense_Mutation p.R462G 0.12 deleterious(0) probably_damaging(0.916) TCGA-22-4604-01 11 89896830 89896830 G T NAALAD2 Intron 0.26 TCGA-22-4604-01 11 89896831 89896831 G T NAALAD2 Intron 0.26 TCGA-22-4604-01 12 102179837 102179838 TT A GNPTAB Frame_Shift_Del p.N175Sfs*38 0.14 TCGA-22-4604-01 12 105464489 105464489 C A ALDH1L2 Missense_Mutation p.R96I 0.12 deleterious_low_confidence(0.05) benign(0.003) TCGA-22-4604-01 12 113710465 113710465 T G TPCN1 Missense_Mutation p.F323V 0.19 deleterious(0) probably_damaging(0.964) TCGA-22-4604-01 12 123481956 123481956 T C PITPNM2 Missense_Mutation p.H463R 0.16 deleterious(0.01) probably_damaging(0.989) TCGA-22-4604-01 12 133733022 133733022 G A ZNF10 Missense_Mutation p.R397K 0.39 tolerated(0.06) probably_damaging(0.974) TCGA-22-4604-01 12 13769390 13769390 C T GRIN2B Missense_Mutation p.E443K 0.24 tolerated(0.38) benign(0.007) TCGA-22-4604-01 12 26775339 26775339 C T ITPR2 Splice_Site p.X1041_splice 0.30 TCGA-22-4604-01 12 40499149 40499149 G - SLC2A13 Frame_Shift_Del p.S155Vfs*36 0.28 TCGA-22-4604-01 12 49690694 49690694 G C PRPH Missense_Mutation p.S242T 0.16 tolerated(0.09) benign(0.014) TCGA-22-4604-01 12 52775270 52775270 C G KRT84 Missense_Mutation p.V318L 0.25 deleterious(0.01) probably_damaging(0.994) TCGA-22-4604-01 12 65456338 65456338 C G WIF1 Missense_Mutation p.C250S 0.29 deleterious(0) probably_damaging(0.973) TCGA-22-4604-01 12 66152407 66152407 A C RPSAP52 RNA 0.06 TCGA-22-4604-01 12 6637954 6637954 C T NCAPD2 Silent p.L1137L 0.33 TCGA-22-4604-01 12 78598727 78598727 C T NAV3 Missense_Mutation p.R2261C 0.30 deleterious(0) probably_damaging(0.999) TCGA-22-4604-01 12 81647378 81647378 C T ACSS3 Silent p.L642L 0.29 TCGA-22-4604-01 12 9984949 9984949 G T KLRF1 Silent p.L41L 0.37 TCGA-22-4604-01 13 24466031 24466031 A G C1QTNF9B Silent p.T133T 0.23 TCGA-22-4604-01 13 28009633 28009633 A G GTF3A Missense_Mutation p.R333G 0.46 tolerated(0.19) benign(0.001) TCGA-22-4604-01 13 58207462 58207462 T A PCDH17 Missense_Mutation p.V261E 0.34 deleterious(0.02) benign(0.284) TCGA-22-4604-01 14 105170413 105170413 G T INF2 Intron 0.40 TCGA-22-4604-01 14 106207942 106207942 G T IGHG1 Missense_Mutation p.F287L 0.31 deleterious(0.03) benign(0.005) TCGA-22-4604-01 14 106926231 106926231 C A IGHV3-43 Missense_Mutation p.S104I 0.18 deleterious_low_confidence(0) benign(0.348) TCGA-22-4604-01 14 24621157 24621157 G T RNF31 Missense_Mutation p.A696S 0.54 tolerated(0.88) benign(0.041) TCGA-22-4604-01 14 24780888 24780888 C T LTB4R2 Missense_Mutation p.R340C 0.57 tolerated(0.2) benign(0.332) TCGA-22-4604-01 14 52471216 52471216 G A C14orf166 Silent p.L239L 0.31 TCGA-22-4604-01 14 54997721 54997721 G T CGRRF1 Missense_Mutation p.A175S 0.39 deleterious(0.02) possibly_damaging(0.552) TCGA-22-4604-01 14 58471869 58471887 ACAGGCACCAGCATCCCAG - C14orf37 Frame_Shift_Del p.S712* 0.38 TCGA-22-4604-01 14 72943476 72943476 C T RGS6 Silent p.S240S 0.09 TCGA-22-4604-01 14 75330330 75330330 T C PROX2 Missense_Mutation p.T70A 0.20 deleterious(0.01) possibly_damaging(0.599) TCGA-22-4604-01 14 78399617 78399617 C T ADCK1 Silent p.S485S 0.17 TCGA-22-4604-01 14 79933711 79933711 C G NRXN3 Missense_Mutation p.A764G 0.37 tolerated(0.16) unknown(0) TCGA-22-4604-01 14 86089404 86089404 G A FLRT2 Missense_Mutation p.A516T 0.31 tolerated(0.58) benign(0.065) TCGA-22-4604-01 14 91700654 91700654 C T GPR68 Silent p.L247L 0.22 TCGA-22-4604-01 14 92105440 92105440 C T CATSPERB Silent p.Q529Q 0.17 TCGA-22-4604-01 14 92482168 92482168 T C TRIP11 Missense_Mutation p.H232R 0.14 tolerated(0.06) probably_damaging(0.998) TCGA-22-4604-01 14 95080939 95080939 T G SERPINA3 Missense_Mutation p.V54G 0.29 deleterious(0.01) benign(0.029) TCGA-22-4604-01 14 96706583 96706583 G A BDKRB2 Intron 0.33 TCGA-22-4604-01 15 102261359 102261359 G A TARSL2 Missense_Mutation p.T179I 0.42 deleterious(0) possibly_damaging(0.692) TCGA-22-4604-01 15 102292751 102292751 A C DNM1P47 RNA 0.07 TCGA-22-4604-01 15 20643996 20643996 C A HERC2P3 RNA 0.24 TCGA-22-4604-01 15 24921807 24921807 C A NPAP1 Missense_Mutation p.P265T 0.10 deleterious(0.02) probably_damaging(0.97) TCGA-22-4604-01 15 36946308 36946308 T C C15orf41 Silent p.N74N 0.14 TCGA-22-4604-01 15 45556870 45556870 G A SLC28A2 Silent p.V202V 0.34 TCGA-22-4604-01 15 49425984 49425984 C G COPS2 Missense_Mutation p.E314Q 0.09 tolerated(0.38) benign(0.059) TCGA-22-4604-01 15 50366359 50366359 T A ATP8B4 Missense_Mutation p.N18Y 0.39 deleterious(0) probably_damaging(0.996) TCGA-22-4604-01 15 59519708 59519708 T C MYO1E Missense_Mutation p.R198G 0.42 deleterious(0) possibly_damaging(0.5) TCGA-22-4604-01 15 72582591 72582591 G A CELF6 Nonsense_Mutation p.R134* 0.13 TCGA-22-4604-01 16 21995838 21995838 A G PDZD9 Missense_Mutation p.I122T 0.03 tolerated(0.09) benign(0.303) TCGA-22-4604-01 16 23619309 23619309 G C PALB2 Missense_Mutation p.H1076D 0.15 deleterious(0) possibly_damaging(0.61) TCGA-22-4604-01 16 30128291 30128291 T A MAPK3 Missense_Mutation p.N314I 0.15 deleterious(0) probably_damaging(0.937) TCGA-22-4604-01 16 31073463 31073463 C T ZNF668 Silent p.T285T 0.13 TCGA-22-4604-01 16 46712999 46712999 C A VPS35 Missense_Mutation p.K192N 0.18 deleterious(0) probably_damaging(1) TCGA-22-4604-01 16 4925412 4925414 GTG - UBN1 In_Frame_Del p.V1001del 0.40 TCGA-22-4604-01 16 49671045 49671045 G A ZNF423 Missense_Mutation p.S673F 0.14 deleterious(0) possibly_damaging(0.905) TCGA-22-4604-01 16 66947036 66947036 G A CDH16 Missense_Mutation p.P351L 0.04 tolerated(0.08) benign(0.021) TCGA-22-4604-01 16 67188649 67188649 G A TRADD Missense_Mutation p.T281M 0.12 deleterious(0) probably_damaging(0.999) TCGA-22-4604-01 16 70508827 70508827 G T FUK Missense_Mutation p.V764L 0.37 tolerated(0.49) benign(0.001) TCGA-22-4604-01 16 71913854 71913854 C A ZNF821 5'UTR 0.13 TCGA-22-4604-01 16 84132744 84132744 G A MBTPS1 Missense_Mutation p.A112V 0.06 tolerated(0.29) benign(0.001) TCGA-22-4604-01 17 16068475 16068475 C A NCOR1 Missense_Mutation p.D146Y 0.15 possibly_damaging(0.466) TCGA-22-4604-01 17 16526936 16526936 C A ZNF624 Missense_Mutation p.G422W 0.38 deleterious(0) probably_damaging(1) TCGA-22-4604-01 17 20224677 20224677 G A AC004702.2 Intron 0.10 TCGA-22-4604-01 17 29661984 29661984 A G NF1 Missense_Mutation p.M1981V 0.29 deleterious(0) possibly_damaging(0.448) TCGA-22-4604-01 17 42987519 42987519 C G GFAP 3'Flank 0.28 TCGA-22-4604-01 17 46690838 46690838 T C HOXB8 Missense_Mutation p.Y153C 0.29 deleterious(0) probably_damaging(0.992) TCGA-22-4604-01 17 63010730 63010730 C T GNA13 Missense_Mutation p.R260Q 0.06 tolerated(0.06) probably_damaging(0.998) TCGA-22-4604-01 17 67145042 67145042 G T ABCA10 Missense_Mutation p.Q1520K 0.29 deleterious(0) possibly_damaging(0.873) TCGA-22-4604-01 17 67145043 67145043 C A ABCA10 Missense_Mutation p.E1519D 0.29 tolerated(0.1) benign(0.224) TCGA-22-4604-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.43 TCGA-22-4604-01 17 78796099 78796099 G A RPTOR Missense_Mutation p.R330Q 0.35 tolerated(0.06) possibly_damaging(0.865) TCGA-22-4604-01 17 80828207 80828207 C T TBCD Missense_Mutation p.R476C 0.32 deleterious(0) probably_damaging(0.999) TCGA-22-4604-01 18 909616 909616 C A ADCYAP1 Missense_Mutation p.R171S 0.46 deleterious(0) probably_damaging(0.999) TCGA-22-4604-01 19 12188251 12188251 G A ZNF844 3'UTR 0.20 TCGA-22-4604-01 19 14104451 14104451 C T RFX1 Missense_Mutation p.G69S 0.42 deleterious_low_confidence(0.04) probably_damaging(0.994) TCGA-22-4604-01 19 17662641 17662641 G A FAM129C Intron 0.48 TCGA-22-4604-01 19 17758177 17758177 C A UNC13A Missense_Mutation p.E647D 0.36 tolerated(0.49) benign(0.012) TCGA-22-4604-01 19 18278092 18278092 G T PIK3R2 Missense_Mutation p.R571L 0.26 deleterious(0) benign(0.023) TCGA-22-4604-01 19 19749075 19749075 G A GMIP Missense_Mutation p.R228W 0.11 tolerated(0.15) benign(0.003) TCGA-22-4604-01 19 22363757 22363757 T C ZNF676 Silent p.K254K 0.05 TCGA-22-4604-01 19 2269646 2269646 A T OAZ1 Nonsense_Mutation p.R17* 0.37 TCGA-22-4604-01 19 34945384 34945384 A T UBA2 Missense_Mutation p.T390S 0.25 tolerated(0.06) probably_damaging(0.971) TCGA-22-4604-01 19 37904971 37904971 G T ZNF569 Missense_Mutation p.Q197K 0.04 tolerated(0.48) benign(0.4) TCGA-22-4604-01 19 41268920 41268920 C T SNRPA Missense_Mutation p.P181S 0.08 tolerated(0.06) benign(0.068) TCGA-22-4604-01 19 4294666 4294666 C A TMIGD2 Missense_Mutation p.V154L 0.04 tolerated(0.32) benign(0.001) TCGA-22-4604-01 19 43680143 43680143 G A PSG5 Silent p.P196P 0.29 TCGA-22-4604-01 19 44537128 44537128 A G ZNF222 Missense_Mutation p.Y474C 0.32 deleterious(0) probably_damaging(0.959) TCGA-22-4604-01 19 44661176 44661176 G A ZNF234 Missense_Mutation p.R336K 0.05 tolerated(0.08) benign(0.34) TCGA-22-4604-01 19 46280647 46280647 T A DMPK Missense_Mutation p.T372S 0.34 tolerated(0.12) probably_damaging(0.998) TCGA-22-4604-01 19 4792611 4792611 G T FEM1A Missense_Mutation p.A249S 0.34 tolerated(0.42) benign(0.005) TCGA-22-4604-01 19 50385600 50385600 C T TBC1D17 Silent p.S247S 0.25 TCGA-22-4604-01 19 51020877 51020877 A G LRRC4B Missense_Mutation p.L698P 0.19 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-22-4604-01 19 52447996 52447996 C G ZNF613 Nonsense_Mutation p.S287* 0.11 TCGA-22-4604-01 19 53343937 53343937 G A ZNF468 3'UTR 0.27 TCGA-22-4604-01 19 54567035 54567035 G A VSTM1 5'UTR 0.03 TCGA-22-4604-01 19 56544122 56544122 C A NLRP5 Missense_Mutation p.P808T 0.20 deleterious(0.01) possibly_damaging(0.717) TCGA-22-4604-01 19 56736422 56736422 T A ZSCAN5A Intron 0.27 TCGA-22-4604-01 19 57328467 57328467 C G PEG3 Missense_Mutation p.G448A 0.26 tolerated(0.39) benign(0.079) TCGA-22-4604-01 19 58301715 58301715 G C ZNF586 Missense_Mutation p.G37A 0.25 deleterious(0) benign(0.01) TCGA-22-4604-01 19 5831575 5831575 G T FUT6 Missense_Mutation p.A335D 0.20 tolerated(0.37) benign(0.012) TCGA-22-4604-01 19 58639176 58639176 C A ZNF329 3'UTR 0.31 TCGA-22-4604-01 19 7168106 7168106 C A INSR Splice_Site p.X495_splice 0.25 TCGA-22-4604-01 19 9089452 9089452 G T MUC16 Missense_Mutation p.A788E 0.34 unknown(0) TCGA-22-4604-01 1 109912202 109912202 C G SORT1 Missense_Mutation p.D106H 0.07 tolerated(0.32) benign(0.002) TCGA-22-4604-01 1 155927613 155927613 T C ARHGEF2 Missense_Mutation p.K536E 0.17 deleterious(0) probably_damaging(0.969) TCGA-22-4604-01 1 156818779 156818779 C A INSRR Missense_Mutation p.R502L 0.39 deleterious(0.03) possibly_damaging(0.657) TCGA-22-4604-01 1 158646059 158646059 C T SPTA1 Silent p.E328E 0.18 TCGA-22-4604-01 1 167487756 167487756 C G CD247 5'UTR 0.16 TCGA-22-4604-01 1 171958143 171958143 G T DNM3 Missense_Mutation p.Q148H 0.50 deleterious(0.01) probably_damaging(0.99) TCGA-22-4604-01 1 172357850 172357850 G A DNM3 Missense_Mutation p.R808H 0.37 deleterious_low_confidence(0) benign(0.01) TCGA-22-4604-01 1 176709266 176709266 G A PAPPA2 Missense_Mutation p.R1362H 0.14 tolerated(1) benign(0) TCGA-22-4604-01 1 1849255 1849255 G C TMEM52 3'UTR 0.47 TCGA-22-4604-01 1 190423861 190423861 A G BRINP3 Missense_Mutation p.F54L 0.13 tolerated(0.18) probably_damaging(0.973) TCGA-22-4604-01 1 192548477 192548477 A G RGS1 3'UTR 0.11 TCGA-22-4604-01 1 215298007 215298007 T C KCNK2 Missense_Mutation p.I130T 0.41 tolerated(0.07) benign(0.003) TCGA-22-4604-01 1 215847696 215847696 C A USH2A Missense_Mutation p.L4519F 0.31 possibly_damaging(0.673) TCGA-22-4604-01 1 27877769 27877769 C A AHDC1 Missense_Mutation p.Q286H 0.33 deleterious_low_confidence(0.01) benign(0.387) TCGA-22-4604-01 1 37270471 37270471 G A GRIK3 Intron 0.37 TCGA-22-4604-01 1 53555552 53555552 G T SLC1A7 Silent p.L427L 0.51 TCGA-22-4604-01 1 67199524 67199524 C A SGIP1 Silent p.P664P 0.45 TCGA-22-4604-01 1 75055689 75055689 C T C1orf173 Missense_Mutation p.G601E 0.57 tolerated(1) benign(0.023) TCGA-22-4604-01 1 9099965 9099965 G A SLC2A5 Missense_Mutation p.A260V 0.35 tolerated(0.31) benign(0.048) TCGA-22-4604-01 20 40065951 40065951 T A CHD6 Missense_Mutation p.N1344I 0.44 deleterious(0.02) benign(0.014) TCGA-22-4604-01 20 60903446 60903446 C T LAMA5 Silent p.P1501P 0.38 TCGA-22-4604-01 21 11097628 11097628 C A BAGE2 RNA 0.05 TCGA-22-4604-01 22 17072644 17072644 T G CCT8L2 Missense_Mutation p.D266A 0.25 deleterious(0.05) benign(0.229) TCGA-22-4604-01 22 18769235 18769235 C G GGT3P RNA 0.07 TCGA-22-4604-01 22 50552829 50552829 C T MOV10L1 Nonsense_Mutation p.Q302* 0.29 TCGA-22-4604-01 22 50609369 50609369 C T PANX2 Silent p.F70F 0.31 TCGA-22-4604-01 2 108487788 108487788 G A RGPD4 Missense_Mutation p.A1110T 0.35 deleterious(0) probably_damaging(0.988) TCGA-22-4604-01 2 128408404 128408404 T C GPR17 Missense_Mutation p.M60T 0.36 tolerated(0.61) benign(0.001) TCGA-22-4604-01 2 128622633 128622633 C T AMMECR1L 3'UTR 0.06 TCGA-22-4604-01 2 136555660 136555660 T C LCT Missense_Mutation p.N1639D 0.39 tolerated(0.1) benign(0.41) TCGA-22-4604-01 2 141526894 141526894 C A LRP1B Missense_Mutation p.M1882I 0.40 benign(0.019) TCGA-22-4604-01 2 141625227 141625227 C G LRP1B Missense_Mutation p.S1504T 0.10 benign(0.003) TCGA-22-4604-01 2 141751623 141751623 C A LRP1B Missense_Mutation p.W862L 0.27 possibly_damaging(0.899) TCGA-22-4604-01 2 152500339 152500339 T A NEB Missense_Mutation p.Q2650L 0.35 probably_damaging(0.998) TCGA-22-4604-01 2 152727093 152727093 C T CACNB4 Silent p.P217P 0.23 TCGA-22-4604-01 2 154996876 154996876 C A GALNT13 Missense_Mutation p.P57T 0.06 deleterious(0.01) possibly_damaging(0.824) TCGA-22-4604-01 2 155711609 155711609 G - KCNJ3 Frame_Shift_Del p.G431Efs*5 0.32 TCGA-22-4604-01 2 162661006 162661006 A G SLC4A10 Missense_Mutation p.K60E 0.16 tolerated(0.23) benign(0.156) TCGA-22-4604-01 2 170062966 170062966 T G LRP2 Missense_Mutation p.M2422L 0.36 benign(0) TCGA-22-4604-01 2 179474028 179474028 G A TTN Nonsense_Mutation p.R17337* 0.38 TCGA-22-4604-01 2 179736925 179736925 G T CCDC141 Missense_Mutation p.L672I 0.13 tolerated(0.16) possibly_damaging(0.596) TCGA-22-4604-01 2 183608387 183608387 G A DNAJC10 Silent p.P418P 0.04 TCGA-22-4604-01 2 196681528 196681528 C A DNAH7 Missense_Mutation p.K3195N 0.10 deleterious(0.01) benign(0.13) TCGA-22-4604-01 2 207603138 207603138 C A MDH1B 3'UTR 0.38 TCGA-22-4604-01 2 21230881 21230881 G A APOB Silent p.P2953P 0.12 TCGA-22-4604-01 2 21231883 21231883 G A APOB Silent p.V2619V 0.24 TCGA-22-4604-01 2 216981498 216981498 G T XRCC5 Missense_Mutation p.M84I 0.35 tolerated(0.06) benign(0.359) TCGA-22-4604-01 2 234368837 234368837 T C DGKD Intron 0.39 TCGA-22-4604-01 2 241737186 241737186 G T KIF1A 5'UTR 0.38 TCGA-22-4604-01 2 242149889 242149889 C T ANO7 Missense_Mutation p.R543C 0.33 tolerated(0.18) probably_damaging(0.935) TCGA-22-4604-01 2 27886562 27886562 C A SLC4A1AP 5'UTR 0.20 TCGA-22-4604-01 2 29145784 29145784 G A WDR43 Splice_Site p.X284_splice 0.24 TCGA-22-4604-01 2 29152477 29152477 T C WDR43 Silent p.D446D 0.53 TCGA-22-4604-01 2 47596651 47596651 C T EPCAM Missense_Mutation p.P3S 0.24 tolerated(0.07) benign(0.002) TCGA-22-4604-01 2 50463966 50463966 G C NRXN1 Missense_Mutation p.D1209E 0.45 tolerated(0.39) benign(0.028) TCGA-22-4604-01 2 54856622 54856622 A T SPTBN1 Missense_Mutation p.K784M 0.24 deleterious(0) probably_damaging(0.943) TCGA-22-4604-01 2 74437170 74437170 C T MTHFD2 Missense_Mutation p.P222S 0.27 tolerated(0.13) possibly_damaging(0.859) TCGA-22-4604-01 2 80101302 80101302 G A CTNNA2 Missense_Mutation p.R229H 0.10 deleterious(0.03) possibly_damaging(0.742) TCGA-22-4604-01 2 86260864 86260864 C - POLR1A Frame_Shift_Del p.A1361Hfs*7 0.24 TCGA-22-4604-01 2 87085229 87085229 G A CD8B Silent p.I118I 0.05 TCGA-22-4604-01 2 99977788 99977788 G A EIF5B Missense_Mutation p.D142N 0.04 unknown(0) TCGA-22-4604-01 3 101390001 101390001 T A ZBTB11 Missense_Mutation p.S251C 0.15 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-22-4604-01 3 108124257 108124257 A T MYH15 Missense_Mutation p.L1575H 0.29 deleterious(0) probably_damaging(0.964) TCGA-22-4604-01 3 108572759 108572759 A G TRAT1 3'UTR 0.15 TCGA-22-4604-01 3 113374483 113374483 G A KIAA2018 Missense_Mutation p.L2016F 0.22 probably_damaging(0.999) TCGA-22-4604-01 3 172642018 172642018 T C SPATA16 Missense_Mutation p.I440V 0.02 tolerated(0.06) benign(0.068) TCGA-22-4604-01 3 180366114 180366114 C A CCDC39 Missense_Mutation p.V401L 0.05 tolerated(0.92) benign(0.011) TCGA-22-4604-01 3 182605445 182605445 T A ATP11B Missense_Mutation p.S929R 0.05 deleterious(0) probably_damaging(0.989) TCGA-22-4604-01 3 184039421 184039421 C T EIF4G1 Missense_Mutation p.P357L 0.08 tolerated(0.07) benign(0.074) TCGA-22-4604-01 3 186954193 186954193 G T MASP1 Missense_Mutation p.A489E 0.04 tolerated(0.75) benign(0) TCGA-22-4604-01 3 193185167 193185167 G T ATP13A4 Missense_Mutation p.T351K 0.08 deleterious(0) probably_damaging(0.973) TCGA-22-4604-01 3 38740051 38740051 G A SCN10A Silent p.L1554L 0.23 TCGA-22-4604-01 3 41439615 41439615 C A ULK4 Missense_Mutation p.E1211D 0.54 tolerated(0.26) benign(0.004) TCGA-22-4604-01 3 46542119 46542119 C G RTP3 Missense_Mutation p.I143M 0.26 deleterious(0.01) possibly_damaging(0.873) TCGA-22-4604-01 3 53787697 53787697 A T CACNA1D Silent p.A1278A 0.34 TCGA-22-4604-01 3 9831550 9831550 T G TADA3 Missense_Mutation p.K102T 0.42 tolerated(0.51) benign(0.018) TCGA-22-4604-01 4 10509582 10509582 C T CLNK Splice_Site p.X328_splice 0.33 TCGA-22-4604-01 4 118005478 118005478 C A TRAM1L1 Missense_Mutation p.V358L 0.36 tolerated(0.32) benign(0.002) TCGA-22-4604-01 4 118005532 118005532 T A TRAM1L1 Nonsense_Mutation p.R340* 0.41 TCGA-22-4604-01 4 13603126 13603126 C A BOD1L1 Nonsense_Mutation p.G1800* 0.38 TCGA-22-4604-01 4 153247252 153247252 C T FBXW7 Missense_Mutation p.G517E 0.40 deleterious(0) probably_damaging(1) TCGA-22-4604-01 4 187120238 187120239 - T CYP4V2 Splice_Site p.X267_splice 0.37 TCGA-22-4604-01 4 42403074 42403074 C A SHISA3 Missense_Mutation p.A108E 0.41 deleterious(0) probably_damaging(1) TCGA-22-4604-01 4 47527587 47527587 A C ATP10D Missense_Mutation p.D235A 0.43 deleterious(0.03) possibly_damaging(0.472) TCGA-22-4604-01 4 56301641 56301641 G T CLOCK Missense_Mutation p.Q828K 0.06 tolerated_low_confidence(0.2) benign(0.006) TCGA-22-4604-01 4 57889495 57889495 G A POLR2B Splice_Site p.X839_splice 0.28 TCGA-22-4604-01 4 70346238 70346238 G C UGT2B4 3'UTR 0.19 TCGA-22-4604-01 4 84391519 84391519 G A FAM175A Missense_Mutation p.H105Y 0.28 deleterious(0) possibly_damaging(0.844) TCGA-22-4604-01 5 101834369 101834369 C A SLCO6A1 Missense_Mutation p.R60S 0.24 deleterious(0.02) benign(0.121) TCGA-22-4604-01 5 11411724 11411724 G T CTNND2 Silent p.L121L 0.15 TCGA-22-4604-01 5 134345105 134345105 G A CATSPER3 Silent p.Q287Q 0.22 TCGA-22-4604-01 5 140744389 140744389 G T PCDHGA5 Silent p.V164V 0.23 TCGA-22-4604-01 5 140751506 140751506 C T PCDHGB3 Silent p.F515F 0.27 TCGA-22-4604-01 5 140865131 140865131 C T PCDHGC4 Missense_Mutation p.P131S 0.16 deleterious(0) probably_damaging(1) TCGA-22-4604-01 5 141019991 141019991 C A RELL2 Missense_Mutation p.Q298K 0.17 tolerated_low_confidence(0.32) benign(0.004) TCGA-22-4604-01 5 1441537 1441537 C A SLC6A3 Missense_Mutation p.A119S 0.12 deleterious(0.03) benign(0.052) TCGA-22-4604-01 5 156592781 156592781 G C FAM71B Missense_Mutation p.H133Q 0.19 deleterious(0.02) probably_damaging(0.985) TCGA-22-4604-01 5 158250303 158250303 T C EBF1 Missense_Mutation p.N220S 0.17 tolerated(0.62) benign(0) TCGA-22-4604-01 5 178634657 178634658 - GTG ADAMTS2 In_Frame_Ins p.H249dup 0.18 TCGA-22-4604-01 5 179297373 179297373 G A TBC1D9B Silent p.A869A 0.22 TCGA-22-4604-01 5 21783478 21783478 G A CDH12 Missense_Mutation p.A461V 0.10 deleterious(0) probably_damaging(0.969) TCGA-22-4604-01 5 45262532 45262532 G A HCN1 Missense_Mutation p.P722S 0.39 tolerated_low_confidence(0.23) benign(0.108) TCGA-22-4604-01 5 61802098 61802098 C T IPO11 Nonsense_Mutation p.Q606* 0.21 TCGA-22-4604-01 5 77771402 77771402 A T SCAMP1 Missense_Mutation p.N310Y 0.16 deleterious(0) probably_damaging(1) TCGA-22-4604-01 5 89968522 89968522 C A GPR98 Missense_Mutation p.P1638T 0.30 probably_damaging(0.995) TCGA-22-4604-01 5 89989705 89989705 A T GPR98 Splice_Site p.X2378_splice 0.32 TCGA-22-4604-01 5 96358154 96358154 T C LNPEP Missense_Mutation p.F843L 0.05 deleterious(0.01) probably_damaging(0.983) TCGA-22-4604-01 6 108066209 108066209 C T SCML4 Missense_Mutation p.R209K 0.34 tolerated(0.29) benign(0.001) TCGA-22-4604-01 6 114378471 114378471 A G HS3ST5 Missense_Mutation p.F331L 0.15 tolerated(0.79) possibly_damaging(0.478) TCGA-22-4604-01 6 128291285 128291285 T G PTPRK 3'UTR 0.27 TCGA-22-4604-01 6 150001043 150001043 C T LATS1 Missense_Mutation p.R854K 0.17 tolerated(0.11) probably_damaging(0.999) TCGA-22-4604-01 6 27925954 27925954 G A OR2B6 Silent p.K312K 0.13 TCGA-22-4604-01 6 32713132 32713133 AC - HLA-DQA2 Frame_Shift_Del p.T95Lfs*16 0.15 TCGA-22-4604-01 6 33041352 33041352 T G HLA-DPA1 5'UTR 0.03 TCGA-22-4604-01 6 34789719 34789719 A T UHRF1BP1 Missense_Mutation p.H78L 0.14 deleterious(0) probably_damaging(0.995) TCGA-22-4604-01 6 35277562 35277562 A G DEF6 Missense_Mutation p.Y71C 0.36 deleterious(0) probably_damaging(0.999) TCGA-22-4604-01 6 35393786 35393786 G A PPARD Missense_Mutation p.R419Q 0.08 tolerated(0.57) benign(0.129) TCGA-22-4604-01 6 39073367 39073367 G C SAYSD1 Missense_Mutation p.F131L 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-22-4604-01 6 46800830 46800830 G C MEP1A Missense_Mutation p.W388C 0.12 deleterious(0) probably_damaging(1) TCGA-22-4604-01 6 56469410 56469410 T C DST Intron 0.03 TCGA-22-4604-01 6 63990933 63990933 C T LGSN Missense_Mutation p.V175M 0.31 deleterious(0.01) possibly_damaging(0.873) TCGA-22-4604-01 6 73000538 73000538 G A RIMS1 Silent p.S1237S 0.25 TCGA-22-4604-01 6 9900633 9900633 T A OFCC1 Intron 0.45 TCGA-22-4604-01 7 100491082 100491082 G T ACHE Missense_Mutation p.L258M 0.23 tolerated(0.65) possibly_damaging(0.488) TCGA-22-4604-01 7 106781375 106781375 T G PRKAR2B Silent p.G188G 0.29 TCGA-22-4604-01 7 111638559 111638559 C T DOCK4 Splice_Site p.X55_splice 0.46 TCGA-22-4604-01 7 129962681 129962681 C T CPA4 3'UTR 0.25 TCGA-22-4604-01 7 14661004 14661004 T C DGKB Missense_Mutation p.Q429R 0.38 tolerated(0.21) benign(0.019) TCGA-22-4604-01 7 148702263 148702263 G C PDIA4 Missense_Mutation p.L498V 0.25 tolerated(0.09) benign(0.391) TCGA-22-4604-01 7 150815341 150815341 G T AGAP3 Missense_Mutation p.A251S 0.27 deleterious(0) probably_damaging(0.999) TCGA-22-4604-01 7 19184715 19184716 GG T FERD3L Frame_Shift_Del p.R91Afs*7 0.29 TCGA-22-4604-01 7 21775362 21775362 A - DNAH11 Frame_Shift_Del p.T2524Qfs*4 0.26 TCGA-22-4604-01 7 29152388 29152388 A T CPVL Missense_Mutation p.Y74N 0.24 deleterious(0) probably_damaging(1) TCGA-22-4604-01 7 30868295 30868295 G A FAM188B Silent p.R358R 0.24 TCGA-22-4604-01 7 48522715 48522715 T A ABCA13 Silent p.A4379A 0.30 TCGA-22-4604-01 7 5331402 5331402 C T SLC29A4 Missense_Mutation p.A165V 0.23 deleterious(0) benign(0.158) TCGA-22-4604-01 7 87477196 87477196 T A SLC25A40 Silent p.I143I 0.27 TCGA-22-4604-01 7 93519463 93519463 C T TFPI2 Missense_Mutation p.C86Y 0.23 deleterious(0) probably_damaging(0.951) TCGA-22-4604-01 8 105361645 105361645 G C DCSTAMP Missense_Mutation p.E289Q 0.04 deleterious(0.01) possibly_damaging(0.8) TCGA-22-4604-01 8 113318395 113318395 G T CSMD3 Missense_Mutation p.P2638T 0.32 deleterious(0) probably_damaging(0.992) TCGA-22-4604-01 8 113649179 113649179 G C CSMD3 Missense_Mutation p.I1194M 0.30 tolerated(0.22) possibly_damaging(0.676) TCGA-22-4604-01 8 124157029 124157029 A G TBC1D31 Missense_Mutation p.R970G 0.34 deleterious(0) possibly_damaging(0.881) TCGA-22-4604-01 8 124369834 124369834 A T ATAD2 Missense_Mutation p.S509T 0.34 deleterious(0) probably_damaging(0.999) TCGA-22-4604-01 8 139263206 139263206 C A FAM135B Silent p.L140L 0.29 TCGA-22-4604-01 8 144946303 144946303 G T EPPK1 Silent p.S373S 0.18 TCGA-22-4604-01 8 1624759 1624759 G - DLGAP2 Frame_Shift_Del p.V676Cfs*63 0.43 TCGA-22-4604-01 8 19218777 19218777 A C SH2D4A Missense_Mutation p.K220Q 0.38 tolerated(0.21) benign(0.081) TCGA-22-4604-01 8 32616829 32616829 C T NRG1 Silent p.Y317Y 0.22 TCGA-22-4604-01 8 38257893 38257893 A T LETM2 Missense_Mutation p.D203V 0.23 deleterious(0.02) benign(0.044) TCGA-22-4604-01 8 40389606 40389606 G C ZMAT4 3'UTR 0.08 TCGA-22-4604-01 8 48883428 48883428 A T MCM4 Missense_Mutation p.I598F 0.30 deleterious(0) probably_damaging(0.99) TCGA-22-4604-01 8 53084631 53084631 C G ST18 Missense_Mutation p.A264P 0.24 tolerated(0.3) benign(0.001) TCGA-22-4604-01 8 56270299 56270299 A G XKR4 Missense_Mutation p.R290G 0.26 deleterious(0) benign(0.266) TCGA-22-4604-01 8 67086977 67086977 G C TRIM55 3'UTR 0.13 TCGA-22-4604-01 8 68934349 68934349 A G PREX2 Missense_Mutation p.I139V 0.22 tolerated(0.15) probably_damaging(0.97) TCGA-22-4604-01 8 86354334 86354334 C T CA3 Nonsense_Mutation p.R89* 0.31 TCGA-22-4604-01 9 111656244 111656244 T C IKBKAP Missense_Mutation p.I947V 0.59 deleterious(0.05) benign(0.012) TCGA-22-4604-01 9 117853217 117853217 T A TNC Missense_Mutation p.K27N 0.55 deleterious(0) possibly_damaging(0.48) TCGA-22-4604-01 9 3330505 3330505 C A RFX3 Silent p.T76T 0.61 TCGA-22-4604-01 9 35609289 35609289 G A TESK1 Silent p.P477P 0.09 TCGA-22-4604-01 9 35802240 35802240 G A NPR2 Missense_Mutation p.R557H 0.24 deleterious(0.03) probably_damaging(0.973) TCGA-22-4604-01 9 79634612 79634612 G T FOXB2 Silent p.P14P 0.20 TCGA-22-4604-01 X 101572212 101572212 G A NXF2 Intron 0.35 TCGA-22-4604-01 X 110491097 110491097 A G CAPN6 Splice_Site p.X536_splice 0.05 TCGA-22-4604-01 X 120181839 120181839 C T GLUD2 Missense_Mutation p.R101W 0.07 tolerated(0.09) benign(0.053) TCGA-22-4604-01 X 145082638 145082638 C A MIR891B RNA 0.56 TCGA-22-4604-01 X 151821068 151821068 T A GABRQ Missense_Mutation p.L408Q 0.58 deleterious(0) probably_damaging(0.991) TCGA-22-4604-01 X 151870031 151870031 G T MAGEA6 Missense_Mutation p.D241Y 0.55 deleterious(0.01) benign(0.285) TCGA-22-4604-01 X 154157066 154157066 G A F8 Missense_Mutation p.R1667W 0.19 deleterious(0) possibly_damaging(0.855) TCGA-22-4604-01 X 215978 215978 C G PLCXD1 Silent p.L316L 0.24 TCGA-22-4604-01 X 22291349 22291350 TG A ZNF645 Frame_Shift_Del p.C81Mfs*21 0.33 TCGA-22-4604-01 X 22292376 22292376 G C ZNF645 Missense_Mutation p.R423T 0.56 deleterious(0.01) unknown(0) TCGA-22-4604-01 X 67943851 67943851 C A STARD8 Missense_Mutation p.Q1028K 0.62 tolerated(0.49) benign(0.032) TCGA-22-4604-01 X 82763266 82763266 C G POU3F4 5'Flank 0.29 TCGA-22-4604-01 X 91133484 91133484 G T PCDH11X Missense_Mutation p.V749L 0.61 tolerated(1) benign(0.002) TCGA-22-4604-01 X 9728766 9728766 C A GPR143 Silent p.V117V 0.47 TCGA-22-4605-01 10 102058338 102058338 C A PKD2L1 Missense_Mutation p.G238W 0.24 deleterious(0) probably_damaging(1) TCGA-22-4605-01 10 102716283 102716283 T A FAM178A Missense_Mutation p.Y1136N 0.11 deleterious(0) probably_damaging(0.992) TCGA-22-4605-01 10 106974291 106974291 G T SORCS3 Missense_Mutation p.G823C 0.19 deleterious(0) probably_damaging(1) TCGA-22-4605-01 10 121657971 121657971 T C SEC23IP Missense_Mutation p.F66L 0.09 deleterious(0) probably_damaging(0.998) TCGA-22-4605-01 10 97098923 97098923 G A SORBS1 Silent p.S944S 0.15 TCGA-22-4605-01 11 113651130 113651130 C A CLDN25 Missense_Mutation p.P205T 0.05 tolerated(0.08) possibly_damaging(0.829) TCGA-22-4605-01 11 123909297 123909297 G C OR10G7 Missense_Mutation p.R138G 0.08 deleterious(0.02) benign(0.319) TCGA-22-4605-01 11 22398111 22398111 G C SLC17A6 Missense_Mutation p.D436H 0.07 deleterious(0) probably_damaging(0.995) TCGA-22-4605-01 11 4928722 4928722 C A OR51A7 Silent p.G41G 0.07 TCGA-22-4605-01 11 5410859 5410859 G T OR51M1 Missense_Mutation p.L77F 0.09 tolerated(0.08) benign(0.008) TCGA-22-4605-01 11 57982249 57982249 C A OR1S1 Silent p.G11G 0.21 TCGA-22-4605-01 11 62300789 62300789 T C AHNAK Missense_Mutation p.E367G 0.05 benign(0.03) TCGA-22-4605-01 11 70333179 70333179 G A SHANK2 Silent p.T1074T 0.07 TCGA-22-4605-01 11 89914852 89914852 A G NAALAD2 Missense_Mutation p.I641M 0.12 tolerated(0.1) benign(0.001) TCGA-22-4605-01 11 9990051 9990051 C G SBF2 Silent p.R479R 0.10 TCGA-22-4605-01 12 21015417 21015417 G A SLCO1B3 Missense_Mutation p.E185K 0.07 deleterious(0) probably_damaging(1) TCGA-22-4605-01 12 66718877 66718877 G T HELB Missense_Mutation p.A881S 0.21 deleterious(0.03) possibly_damaging(0.573) TCGA-22-4605-01 12 89985003 89985003 T A ATP2B1 Missense_Mutation p.I1141F 0.08 deleterious_low_confidence(0.03) possibly_damaging(0.624) TCGA-22-4605-01 14 45716149 45716150 - T MIS18BP1 Frame_Shift_Ins p.I114Nfs*12 0.13 TCGA-22-4605-01 14 81382841 81382841 C T CEP128 Silent p.L17L 0.18 TCGA-22-4605-01 15 25451326 25451326 C A SNORD115-22 5'Flank 0.16 TCGA-22-4605-01 15 51696717 51696717 C T GLDN Silent p.N474N 0.15 TCGA-22-4605-01 15 55919298 55919298 T C PRTG Silent p.Q945Q 0.11 TCGA-22-4605-01 16 15818696 15818696 G T NDE1 3'UTR 0.15 TCGA-22-4605-01 16 21979950 21979951 - A UQCRC2 Frame_Shift_Ins p.H206Tfs*30 0.10 TCGA-22-4605-01 16 27226323 27226323 G A KDM8 Silent p.V302V 0.18 TCGA-22-4605-01 16 57272840 57272840 C T RSPRY1 Missense_Mutation p.R562C 0.17 deleterious(0) probably_damaging(0.999) TCGA-22-4605-01 17 10429986 10429986 C G MYH2 Missense_Mutation p.E1373Q 0.04 deleterious(0.03) possibly_damaging(0.81) TCGA-22-4605-01 17 31082553 31082553 A C MYO1D Missense_Mutation p.L475R 0.18 deleterious(0) probably_damaging(0.988) TCGA-22-4605-01 17 39274382 39274382 G T KRTAP4-11 Silent p.P62P 0.09 TCGA-22-4605-01 17 39777887 39777887 T C KRT17 Silent p.A264A 0.04 TCGA-22-4605-01 17 48703880 48703880 G A CACNA1G Missense_Mutation p.R2301Q 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.783) TCGA-22-4605-01 17 7577018 7577018 C A TP53 Splice_Site p.X307_splice 0.25 TCGA-22-4605-01 17 78078576 78078576 G A GAA Missense_Mutation p.G64E 0.18 tolerated_low_confidence(0.74) benign(0.004) TCGA-22-4605-01 19 15052678 15052678 C G OR7C2 Missense_Mutation p.I126M 0.09 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-22-4605-01 19 17692189 17692189 G T COLGALT1 Missense_Mutation p.R602L 0.31 tolerated(0.36) benign(0.012) TCGA-22-4605-01 19 43441215 43441215 G A PSG7 Missense_Mutation p.S5L 0.04 deleterious(0.02) possibly_damaging(0.877) TCGA-22-4605-01 19 6364651 6364651 G A CLPP Splice_Site p.X185_splice 0.21 TCGA-22-4605-01 19 8194213 8194213 G A FBN3 Missense_Mutation p.A694V 0.18 tolerated(0.15) benign(0.314) TCGA-22-4605-01 19 9452851 9452851 G A ZNF559 Missense_Mutation p.E242K 0.10 tolerated(0.48) benign(0.003) TCGA-22-4605-01 1 110086204 110086204 G A GPR61 Missense_Mutation p.G187E 0.06 tolerated(0.64) benign(0.005) TCGA-22-4605-01 1 149783915 149783915 T G HIST2H2BF 5'UTR 0.31 TCGA-22-4605-01 1 149898633 149898633 T C SF3B4 Missense_Mutation p.K114R 0.27 tolerated(0.13) benign(0.348) TCGA-22-4605-01 1 162567619 162567619 A G UAP1 Missense_Mutation p.I466V 0.26 tolerated(0.15) benign(0.025) TCGA-22-4605-01 1 169698398 169698398 A G SELE Missense_Mutation p.M340T 0.30 tolerated(0.77) benign(0) TCGA-22-4605-01 1 18023820 18023820 C T ARHGEF10L Missense_Mutation p.P1262L 0.17 tolerated(0.31) benign(0.002) TCGA-22-4605-01 1 217804749 217804749 G A SPATA17 Missense_Mutation p.R10K 0.05 tolerated(0.08) benign(0.025) TCGA-22-4605-01 1 247836305 247836305 G T OR13G1 Silent p.G13G 0.08 TCGA-22-4605-01 1 27333082 27333082 G T FAM46B Missense_Mutation p.Q211K 0.27 deleterious(0.04) benign(0.004) TCGA-22-4605-01 1 32560465 32560465 G A TMEM39B Silent p.Q336Q 0.11 TCGA-22-4605-01 1 5923357 5923357 C T NPHP4 Missense_Mutation p.E1417K 0.19 deleterious(0) probably_damaging(1) TCGA-22-4605-01 21 45846929 45846929 G A TRPM2 Silent p.V1303V 0.50 TCGA-22-4605-01 22 17308543 17308543 G T HSFY1P1 RNA 0.30 TCGA-22-4605-01 22 22868898 22868898 T C ZNF280A Missense_Mutation p.I353V 0.32 tolerated(0.06) benign(0.032) TCGA-22-4605-01 2 120848074 120848074 G T EPB41L5 Missense_Mutation p.G342V 0.07 deleterious(0) probably_damaging(1) TCGA-22-4605-01 2 165755093 165755093 T C SLC38A11 Missense_Mutation p.M359V 0.05 tolerated(0.25) benign(0.088) TCGA-22-4605-01 2 176948339 176948339 C A EVX2 Missense_Mutation p.A56S 0.22 tolerated(0.09) benign(0.075) TCGA-22-4605-01 2 178098960 178098960 C G NFE2L2 Missense_Mutation p.D29H 0.20 deleterious(0) probably_damaging(1) TCGA-22-4605-01 2 191922757 191922757 T A STAT4 Missense_Mutation p.E398V 0.21 deleterious(0) probably_damaging(0.995) TCGA-22-4605-01 2 63175960 63175960 T C EHBP1 Missense_Mutation p.L695S 0.23 tolerated_low_confidence(0.06) benign(0.035) TCGA-22-4605-01 2 71046561 71046561 C A CLEC4F Missense_Mutation p.R65I 0.14 tolerated(0.08) benign(0.162) TCGA-22-4605-01 3 115395425 115395425 C A GAP43 Missense_Mutation p.T235N 0.24 deleterious(0.01) possibly_damaging(0.679) TCGA-22-4605-01 3 124114112 124114112 A G KALRN Missense_Mutation p.N696S 0.21 tolerated(0.59) unknown(0) TCGA-22-4605-01 3 142747213 142747213 G A U2SURP Missense_Mutation p.V471I 0.14 tolerated(0.65) benign(0.173) TCGA-22-4605-01 3 196666198 196666198 T G NCBP2 Missense_Mutation p.K62Q 0.14 tolerated(0.05) benign(0.122) TCGA-22-4605-01 3 42610405 42610405 G A SEC22C Missense_Mutation p.A45V 0.06 tolerated(0.05) possibly_damaging(0.582) TCGA-22-4605-01 4 155242003 155242003 C A DCHS2 Silent p.V1061V 0.17 TCGA-22-4605-01 4 155508746 155508746 C A FGA Missense_Mutation p.R143L 0.10 tolerated(0.24) benign(0.253) TCGA-22-4605-01 4 187518143 187518143 C A FAT1 Missense_Mutation p.G4184V 0.13 probably_damaging(0.984) TCGA-22-4605-01 4 40122219 40122219 A G N4BP2 Missense_Mutation p.S830G 0.11 tolerated(0.05) benign(0.001) TCGA-22-4605-01 4 55161292 55161300 CTCGCAGAC - PDGFRA In_Frame_Del p.Q1043_S1045del 0.14 TCGA-22-4605-01 4 77987400 77987400 A G CCNI Splice_Site p.X38_splice 0.09 TCGA-22-4605-01 4 83349448 83349448 C T HNRNPDL Missense_Mutation p.A199T 0.11 tolerated(0.07) benign(0.288) TCGA-22-4605-01 4 95129593 95129593 G A SMARCAD1 Silent p.K16K 0.08 TCGA-22-4605-01 5 140870009 140870009 A G PCDHGC5 Missense_Mutation p.E401G 0.25 tolerated(0.26) possibly_damaging(0.672) TCGA-22-4605-01 5 160758118 160758118 G T GABRB2 Silent p.L283L 0.06 TCGA-22-4605-01 5 23527596 23527596 G T PRDM9 Missense_Mutation p.G800V 0.10 deleterious(0.01) unknown(0) TCGA-22-4605-01 5 24593472 24593472 C T CDH10 Missense_Mutation p.R43K 0.16 tolerated(0.96) benign(0.002) TCGA-22-4605-01 5 39202557 39202557 G A FYB Missense_Mutation p.A179V 0.08 tolerated(0.87) benign(0.002) TCGA-22-4605-01 5 74721188 74721188 T C COL4A3BP Missense_Mutation p.K326R 0.13 tolerated(0.35) benign(0.011) TCGA-22-4605-01 6 109980566 109980566 A G AK9 Silent p.N165N 0.10 TCGA-22-4605-01 6 132061418 132061418 C A ENPP3 Silent p.T785T 0.09 TCGA-22-4605-01 6 132636840 132636840 G T MOXD1 Missense_Mutation p.A481E 0.07 tolerated(1) benign(0.034) TCGA-22-4605-01 6 139563812 139563812 C A TXLNB Missense_Mutation p.A636S 0.13 tolerated_low_confidence(0.57) benign(0.001) TCGA-22-4605-01 6 29797604 29797604 C G HLA-G Missense_Mutation p.L303V 0.11 deleterious_low_confidence(0) benign(0.12) TCGA-22-4605-01 6 30954997 30954997 G A MUC21 Missense_Mutation p.E349K 0.21 tolerated(0.85) unknown(0) TCGA-22-4605-01 6 31540723 31540723 C T LTA Missense_Mutation p.L40F 0.12 tolerated(0.2) benign(0.39) TCGA-22-4605-01 6 31729298 31729298 G A MSH5 Missense_Mutation p.R697H 0.11 tolerated(0.09) benign(0.408) TCGA-22-4605-01 6 32023924 32023924 G A TNXB Missense_Mutation p.T2724M 0.27 probably_damaging(0.997) TCGA-22-4605-01 6 38561994 38561994 G A BTBD9 Missense_Mutation p.R99W 0.13 deleterious(0.02) unknown(0) TCGA-22-4605-01 6 41121659 41121659 A T TREML1 Silent p.A71A 0.10 TCGA-22-4605-01 6 54214660 54214660 A G TINAG Missense_Mutation p.Y349C 0.20 deleterious(0) probably_damaging(1) TCGA-22-4605-01 6 656843 656843 C T HUS1B Silent p.V34V 0.36 TCGA-22-4605-01 6 74079360 74079360 G T OOEP Missense_Mutation p.F52L 0.15 tolerated(0.19) benign(0.444) TCGA-22-4605-01 6 74079361 74079361 A T OOEP Missense_Mutation p.F52Y 0.15 deleterious(0.04) possibly_damaging(0.828) TCGA-22-4605-01 6 75818805 75818805 C G COL12A1 Missense_Mutation p.A2677P 0.21 possibly_damaging(0.762) TCGA-22-4605-01 6 84865016 84865016 C A KIAA1009 Splice_Site p.X998_splice 0.14 TCGA-22-4605-01 7 100176364 100176364 C G LRCH4 Missense_Mutation p.R215P 0.14 deleterious(0.01) probably_damaging(0.987) TCGA-22-4605-01 7 100350454 100350454 C A ZAN Missense_Mutation p.S909Y 0.08 unknown(0) TCGA-22-4605-01 7 100676680 100676680 C A MUC17 Silent p.T661T 0.10 TCGA-22-4605-01 7 137270061 137270061 A C DGKI Missense_Mutation p.L486R 0.17 deleterious(0) probably_damaging(1) TCGA-22-4605-01 7 155599150 155599150 G A SHH Silent p.H134H 0.12 TCGA-22-4605-01 7 48545959 48545959 G T ABCA13 Missense_Mutation p.G4440V 0.09 probably_damaging(0.999) TCGA-22-4605-01 7 75186983 75186983 C T HIP1 Missense_Mutation p.R519H 0.18 deleterious(0.02) benign(0.002) TCGA-22-4605-01 7 92818498 92818498 A G HEPACAM2 3'UTR 0.22 TCGA-22-4605-01 8 105010414 105010414 C A RIMS2 Intron 0.17 TCGA-22-4605-01 8 143960773 143960773 T A CYP11B1 Intron 0.17 TCGA-22-4605-01 8 18393463 18393463 G A PSD3 Silent p.T978T 0.07 TCGA-22-4605-01 8 24209552 24209552 C G ADAM28 Missense_Mutation p.P744R 0.06 deleterious(0.01) possibly_damaging(0.58) TCGA-22-4605-01 9 107380010 107380010 T G OR13C9 Missense_Mutation p.Q159P 0.05 deleterious(0.01) probably_damaging(0.998) TCGA-22-4605-01 9 120477001 120477001 A T TLR4 3'UTR 0.29 TCGA-22-4605-01 X 101395834 101395834 T G TCEAL6 Missense_Mutation p.Q157P 0.08 deleterious(0) probably_damaging(1) TCGA-22-4605-01 X 109696226 109696226 C G RGAG1 Missense_Mutation p.S794C 0.12 deleterious(0.01) probably_damaging(0.946) TCGA-22-4605-01 X 30260286 30260286 C A MAGEB4 Missense_Mutation p.R12S 0.16 deleterious(0.01) probably_damaging(0.993) TCGA-22-4605-01 X 57162426 57162426 G C SPIN2A Missense_Mutation p.P202R 0.16 deleterious(0.03) benign(0.406) TCGA-22-4605-01 X 77264719 77264719 C T ATP7A Missense_Mutation p.P610S 0.10 tolerated(0.1) benign(0.082) TCGA-22-4607-01 10 103339194 103339194 C T POLL 3'UTR 0.14 TCGA-22-4607-01 10 113928283 113928283 C A GPAM Splice_Site p.X299_splice 0.27 TCGA-22-4607-01 10 116732013 116732013 A G TRUB1 Missense_Mutation p.Q239R 0.05 tolerated(0.14) benign(0.115) TCGA-22-4607-01 10 18823121 18823121 C T CACNB2 Missense_Mutation p.P391S 0.21 deleterious(0.01) probably_damaging(1) TCGA-22-4607-01 10 35299152 35299152 T C CUL2 3'Flank 0.33 TCGA-22-4607-01 10 5242169 5242169 T A AKR1C4 Missense_Mutation p.V37D 0.05 deleterious(0.02) benign(0.009) TCGA-22-4607-01 11 108043367 108043367 T C NPAT Missense_Mutation p.K782E 0.33 tolerated(0.05) possibly_damaging(0.547) TCGA-22-4607-01 11 113608372 113608372 C T ZW10 Silent p.V646V 0.13 TCGA-22-4607-01 11 17409221 17409221 C T KCNJ11 Missense_Mutation p.E140K 0.12 deleterious(0) probably_damaging(0.993) TCGA-22-4607-01 11 45924235 45924235 G T MAPK8IP1 Missense_Mutation p.R306L 0.23 deleterious(0) possibly_damaging(0.619) TCGA-22-4607-01 11 55579660 55579660 A T OR5L1 Missense_Mutation p.T240S 0.28 deleterious(0) probably_damaging(0.973) TCGA-22-4607-01 11 63278578 63278578 G C LGALS12 Splice_Site p.X209_splice 0.09 TCGA-22-4607-01 11 64572634 64572634 C G MEN1 Missense_Mutation p.E413Q 0.14 tolerated(0.05) possibly_damaging(0.625) TCGA-22-4607-01 11 67201893 67201893 C T RPS6KB2 Nonsense_Mutation p.Q365* 0.30 TCGA-22-4607-01 12 101295487 101295487 C T ANO4 5'UTR 0.14 TCGA-22-4607-01 12 1192740 1192740 G A ERC1 Silent p.L360L 0.05 TCGA-22-4607-01 12 29669355 29669355 G A TMTC1 Missense_Mutation p.S745L 0.05 deleterious(0.03) benign(0.013) TCGA-22-4607-01 13 48881488 48881489 - AG RB1 Frame_Shift_Ins p.A74Efs*4 0.34 TCGA-22-4607-01 13 84454188 84454188 G A SLITRK1 Silent p.S485S 0.33 TCGA-22-4607-01 14 106110410 106110410 C T IGHG2 Missense_Mutation p.C109Y 0.04 tolerated(0.06) probably_damaging(0.955) TCGA-22-4607-01 14 20403949 20403949 A T OR4K1 Missense_Mutation p.N42Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-22-4607-01 15 34548481 34548481 T C SLC12A6 Missense_Mutation p.M232V 0.29 deleterious(0) benign(0.092) TCGA-22-4607-01 15 74703219 74703219 C T SEMA7A Missense_Mutation p.V583M 0.29 tolerated(0.1) possibly_damaging(0.861) TCGA-22-4607-01 16 68398801 68398801 C A SMPD3 Missense_Mutation p.A470S 0.30 tolerated(0.59) benign(0.047) TCGA-22-4607-01 16 72831382 72831382 T C ZFHX3 Silent p.Q1733Q 0.21 TCGA-22-4607-01 16 75149555 75149555 C G LDHD Missense_Mutation p.E26Q 0.13 tolerated(0.45) benign(0.004) TCGA-22-4607-01 16 75563756 75563756 G A CHST5 Missense_Mutation p.T176M 0.17 deleterious(0.03) possibly_damaging(0.806) TCGA-22-4607-01 16 89623473 89623473 G A SPG7 Missense_Mutation p.G787E 0.07 tolerated_low_confidence(1) benign(0) TCGA-22-4607-01 17 1650617 1650617 G C SERPINF2 Missense_Mutation p.E176Q 0.46 tolerated(0.3) benign(0.1) TCGA-22-4607-01 17 56386399 56386399 G C BZRAP1 Missense_Mutation p.P1412A 0.16 tolerated(0.09) benign(0.196) TCGA-22-4607-01 17 73492407 73492407 C T KIAA0195 Missense_Mutation p.T1033I 0.13 deleterious(0.02) possibly_damaging(0.792) TCGA-22-4607-01 17 7578403 7578403 C A TP53 Missense_Mutation p.C176F 0.42 deleterious(0) probably_damaging(0.993) TCGA-22-4607-01 18 44627473 44627473 G C KATNAL2 3'UTR 0.25 TCGA-22-4607-01 19 10222322 10222322 C G P2RY11 5'UTR 0.08 TCGA-22-4607-01 19 10449393 10449393 G C ICAM3 Missense_Mutation p.S103C 0.06 deleterious(0.03) probably_damaging(0.935) TCGA-22-4607-01 19 10690514 10690516 CTA - AP1M2 In_Frame_Del p.V231del 0.10 TCGA-22-4607-01 19 53793567 53793567 C G BIRC8 Missense_Mutation p.E21Q 0.34 deleterious(0.01) probably_damaging(0.978) TCGA-22-4607-01 19 57329195 57329195 C T PEG3 Missense_Mutation p.A261T 0.24 deleterious(0) probably_damaging(0.989) TCGA-22-4607-01 19 6913673 6913673 G A EMR1 Missense_Mutation p.E378K 0.05 tolerated(0.26) benign(0.013) TCGA-22-4607-01 19 6919644 6919644 G C EMR1 Missense_Mutation p.L502F 0.05 tolerated(0.33) benign(0.035) TCGA-22-4607-01 19 6919665 6919665 G T EMR1 Silent p.L509L 0.05 TCGA-22-4607-01 19 9019622 9019622 C T MUC16 Silent p.R12508R 0.88 TCGA-22-4607-01 1 100327202 100327202 G A AGL Missense_Mutation p.D76N 0.07 tolerated(0.1) benign(0.274) TCGA-22-4607-01 1 109439595 109439595 G A GPSM2 Missense_Mutation p.E56K 0.05 deleterious(0.01) possibly_damaging(0.814) TCGA-22-4607-01 1 145537822 145537822 G C ITGA10 Missense_Mutation p.G887A 0.13 tolerated(0.42) benign(0.217) TCGA-22-4607-01 1 156255757 156255757 C G TMEM79 Missense_Mutation p.T247S 0.02 deleterious(0.05) probably_damaging(0.997) TCGA-22-4607-01 1 157738319 157738319 C G FCRL2 Silent p.L256L 0.40 TCGA-22-4607-01 1 183520990 183520990 C T SMG7 Intron 0.08 TCGA-22-4607-01 1 210010489 210010489 G T DIEXF Missense_Mutation p.R332L 0.20 tolerated(0.81) benign(0.002) TCGA-22-4607-01 1 248004586 248004586 C A OR11L1 Missense_Mutation p.A205S 0.42 tolerated(0.16) possibly_damaging(0.862) TCGA-22-4607-01 1 37948064 37948064 G A ZC3H12A Missense_Mutation p.R283Q 0.05 deleterious(0) probably_damaging(0.997) TCGA-22-4607-01 1 48771547 48771547 C A SPATA6 Nonsense_Mutation p.E400* 0.07 TCGA-22-4607-01 1 55464936 55464936 T A BSND Missense_Mutation p.M26K 0.26 deleterious(0) probably_damaging(0.917) TCGA-22-4607-01 1 91818104 91818104 T A HFM1 Missense_Mutation p.T646S 0.13 tolerated(0.2) benign(0.052) TCGA-22-4607-01 20 25656577 25656577 T A ZNF337 Missense_Mutation p.K449N 0.04 tolerated(0.53) possibly_damaging(0.728) TCGA-22-4607-01 20 9546970 9546970 G A PAK7 Missense_Mutation p.P351L 0.29 deleterious(0) probably_damaging(0.997) TCGA-22-4607-01 22 43280505 43280505 C T PACSIN2 Silent p.E224E 0.06 TCGA-22-4607-01 2 220047043 220047043 C G FAM134A Missense_Mutation p.L442V 0.34 tolerated(0.14) benign(0.081) TCGA-22-4607-01 2 220164096 220164096 G T PTPRN Missense_Mutation p.P512T 0.04 deleterious(0) possibly_damaging(0.791) TCGA-22-4607-01 2 227985759 227985759 G A COL4A4 Missense_Mutation p.P100S 0.13 probably_damaging(1) TCGA-22-4607-01 2 238443205 238443205 A C MLPH Splice_Site p.X341_splice 0.25 TCGA-22-4607-01 2 25048948 25048948 A G ADCY3 Missense_Mutation p.L848P 0.38 deleterious(0) benign(0.023) TCGA-22-4607-01 2 42990448 42990448 T C OXER1 Missense_Mutation p.Q291R 0.16 tolerated(1) benign(0.005) TCGA-22-4607-01 2 99013095 99013095 G A CNGA3 Missense_Mutation p.A488T 0.10 deleterious(0.01) benign(0.358) TCGA-22-4607-01 3 123699445 123699445 G A ROPN1 5'UTR 0.20 TCGA-22-4607-01 3 134278014 134278014 C T CEP63 Missense_Mutation p.H566Y 0.05 tolerated(0.08) benign(0.134) TCGA-22-4607-01 3 95374425 95374425 T G MTHFD2P1 RNA 0.18 TCGA-22-4607-01 4 148582038 148582038 C G PRMT10 Missense_Mutation p.E369Q 0.06 tolerated(0.21) benign(0.014) TCGA-22-4607-01 4 155125 155125 A G ZNF718 RNA 0.73 TCGA-22-4607-01 4 17829940 17829940 T C NCAPG Missense_Mutation p.Y565H 0.05 tolerated(0.47) benign(0.012) TCGA-22-4607-01 5 132228778 132228778 C G AFF4 Missense_Mutation p.K780N 0.06 deleterious(0) possibly_damaging(0.881) TCGA-22-4607-01 5 159854787 159854787 C T PTTG1 Missense_Mutation p.L146F 0.06 deleterious(0) probably_damaging(0.967) TCGA-22-4607-01 5 67569222 67569222 G C PIK3R1 Missense_Mutation p.L113F 0.05 tolerated(0.51) benign(0.001) TCGA-22-4607-01 5 72183038 72183038 C T TNPO1 Missense_Mutation p.A431V 0.39 deleterious(0) possibly_damaging(0.684) TCGA-22-4607-01 5 80074605 80074605 C G MSH3 Silent p.L795L 0.11 TCGA-22-4607-01 5 89921057 89921057 C T GPR98 Silent p.D223D 0.22 TCGA-22-4607-01 6 128540114 128540114 G C PTPRK Nonsense_Mutation p.S274* 0.43 TCGA-22-4607-01 6 132029778 132029778 C T CTAGE9 3'UTR 0.05 TCGA-22-4607-01 7 26225048 26225048 C T NFE2L3 Missense_Mutation p.S577L 0.26 deleterious(0.04) possibly_damaging(0.863) TCGA-22-4607-01 7 63538457 63538457 G A ZNF727 Missense_Mutation p.E344K 0.36 deleterious(0.03) probably_damaging(0.977) TCGA-22-4607-01 8 103572984 103572992 TGCAGCCCC - ODF1 In_Frame_Del p.S216_C218del 0.27 TCGA-22-4607-01 8 145150845 145150845 C A CYC1 Nonsense_Mutation p.S80* 0.23 TCGA-22-4607-01 9 140130450 140130450 G T SLC34A3 Missense_Mutation p.W461L 0.07 deleterious(0) probably_damaging(0.996) TCGA-22-4607-01 X 123775819 123775819 A G TENM1 Silent p.C633C 0.58 TCGA-22-4607-01 X 128940231 128940231 A C ZDHHC9 3'UTR 0.57 TCGA-22-4607-01 X 53106311 53106311 G A GPR173 Missense_Mutation p.E170K 0.08 tolerated(0.07) benign(0.215) TCGA-22-4607-01 X 77150833 77150833 G C MAGT1 Silent p.P57P 0.48 TCGA-22-4609-01 10 108338949 108338949 G C SORCS1 Missense_Mutation p.I1144M 0.26 deleterious(0.03) benign(0.126) TCGA-22-4609-01 10 113920616 113920616 A T GPAM Missense_Mutation p.L502H 0.26 deleterious(0) possibly_damaging(0.885) TCGA-22-4609-01 10 74096446 74096446 C T DNAJB12 Missense_Mutation p.G315D 0.16 deleterious(0) probably_damaging(1) TCGA-22-4609-01 11 105880543 105880543 C G MSANTD4 Missense_Mutation p.E253Q 0.23 tolerated(0.07) benign(0.389) TCGA-22-4609-01 11 108464190 108464190 A C EXPH5 Missense_Mutation p.L25R 0.25 deleterious(0) probably_damaging(0.999) TCGA-22-4609-01 11 123814286 123814286 G T OR6T1 Missense_Mutation p.T87K 0.18 tolerated(0.29) benign(0.045) TCGA-22-4609-01 11 1629276 1629276 G A KRTAP5-3 Missense_Mutation p.R114C 0.20 deleterious(0.05) unknown(0) TCGA-22-4609-01 11 18750489 18750489 G A PTPN5 Missense_Mutation p.P564S 0.15 tolerated(0.34) benign(0.004) TCGA-22-4609-01 11 30032877 30032877 C G KCNA4 Missense_Mutation p.R450P 0.16 deleterious(0) probably_damaging(0.999) TCGA-22-4609-01 11 46747431 46747431 G T F2 Silent p.A194A 0.18 TCGA-22-4609-01 11 48286286 48286286 G T OR4X1 Missense_Mutation p.V292L 0.19 deleterious(0) benign(0.033) TCGA-22-4609-01 11 4903180 4903180 T C OR51T1 Silent p.T44T 0.24 TCGA-22-4609-01 11 5153269 5153269 C T OR52A5 Missense_Mutation p.G202S 0.15 tolerated(0.12) probably_damaging(0.998) TCGA-22-4609-01 11 5444192 5444192 C T OR51Q1 Silent p.Y254Y 0.06 TCGA-22-4609-01 11 55606862 55606862 C A OR5D16 Missense_Mutation p.T212K 0.13 deleterious(0) probably_damaging(0.952) TCGA-22-4609-01 11 55681185 55681185 G T OR5W2 Missense_Mutation p.L292M 0.18 deleterious(0.01) probably_damaging(0.983) TCGA-22-4609-01 11 55761772 55761772 G C OR5F1 Silent p.T110T 0.20 TCGA-22-4609-01 11 55873424 55873424 C A OR8H2 Silent p.I302I 0.23 TCGA-22-4609-01 11 56143464 56143464 G T OR8U1 Missense_Mutation p.R122L 0.17 deleterious(0) possibly_damaging(0.828) TCGA-22-4609-01 11 61018726 61018726 C A PGA5 Missense_Mutation p.N380K 0.17 deleterious(0.01) probably_damaging(0.974) TCGA-22-4609-01 11 61503245 61503245 G T DAGLA Missense_Mutation p.R416L 0.33 tolerated(0.14) probably_damaging(0.998) TCGA-22-4609-01 11 61544787 61544787 G C MYRF Missense_Mutation p.A548P 0.15 deleterious(0) probably_damaging(0.99) TCGA-22-4609-01 11 61583838 61583838 C A FADS1 Intron 0.19 TCGA-22-4609-01 11 72290336 72290336 A G PDE2A Missense_Mutation p.M783T 0.12 deleterious(0) probably_damaging(0.999) TCGA-22-4609-01 11 74638504 74638504 C G XRRA1 Missense_Mutation p.E144Q 0.17 deleterious(0.04) possibly_damaging(0.884) TCGA-22-4609-01 11 76726159 76726159 G A ACER3 Silent p.L199L 0.16 TCGA-22-4609-01 11 8483455 8483455 G T STK33 Missense_Mutation p.A152D 0.24 deleterious(0) probably_damaging(0.995) TCGA-22-4609-01 11 88337888 88337888 T G GRM5 Silent p.G464G 0.20 TCGA-22-4609-01 11 89768538 89768538 T C TRIM49C Silent p.S53S 0.37 TCGA-22-4609-01 12 101705960 101705960 T G UTP20 Missense_Mutation p.F820V 0.20 deleterious(0) possibly_damaging(0.844) TCGA-22-4609-01 12 105150750 105150750 C G CHST11 Silent p.V76V 0.11 TCGA-22-4609-01 12 111160477 111160477 T C PPP1CC Missense_Mutation p.M183V 0.24 tolerated_low_confidence(0.05) benign(0.392) TCGA-22-4609-01 12 112650386 112650386 C A HECTD4 Missense_Mutation p.G2366C 0.17 probably_damaging(0.997) TCGA-22-4609-01 12 113306407 113306408 - A RPH3A Intron 0.21 TCGA-22-4609-01 12 117768677 117768677 C G NOS1 Silent p.A66A 0.15 TCGA-22-4609-01 12 124228831 124228831 G T ATP6V0A2 Missense_Mutation p.A425S 0.15 deleterious(0.03) possibly_damaging(0.467) TCGA-22-4609-01 12 133226444 133226444 G A POLE Missense_Mutation p.P1205L 0.13 tolerated(0.37) benign(0) TCGA-22-4609-01 12 14832649 14832649 G A GUCY2C Silent p.L258L 0.19 TCGA-22-4609-01 12 25679754 25679754 A T IFLTD1 Silent p.S209S 0.19 TCGA-22-4609-01 12 40699627 40699627 T A LRRK2 Missense_Mutation p.L1273Q 0.21 deleterious(0) probably_damaging(0.98) TCGA-22-4609-01 12 50188955 50188978 CAGCACGTTCTCCTCAATGCCCTT - NCKAP5L In_Frame_Del p.K889_L896del 0.22 TCGA-22-4609-01 12 51852359 51852359 T A SLC4A8 Silent p.P260P 0.14 TCGA-22-4609-01 12 62996705 62996705 C T C12orf61 3'UTR 0.10 TCGA-22-4609-01 12 7301634 7301634 T A CLSTN3 Silent p.P638P 0.33 TCGA-22-4609-01 12 7301635 7301635 G T CLSTN3 Missense_Mutation p.D639Y 0.35 deleterious(0) possibly_damaging(0.76) TCGA-22-4609-01 13 114780756 114780756 C T RASA3 Missense_Mutation p.G445E 0.08 deleterious(0.02) probably_damaging(1) TCGA-22-4609-01 13 22070199 22070199 A G MICU2 Missense_Mutation p.V345A 0.17 deleterious(0) possibly_damaging(0.849) TCGA-22-4609-01 13 32785029 32785029 C A FRY Nonsense_Mutation p.C1483* 0.25 TCGA-22-4609-01 13 37012858 37012858 C T CCNA1 Silent p.D249D 0.15 TCGA-22-4609-01 13 37559829 37559829 C A ALG5 Nonsense_Mutation p.G166* 0.10 TCGA-22-4609-01 13 39424302 39424302 G T FREM2 Silent p.G2169G 0.23 TCGA-22-4609-01 13 46584631 46584631 C A ZC3H13 Nonsense_Mutation p.E200* 0.18 TCGA-22-4609-01 13 75887013 75887013 C A TBC1D4 Missense_Mutation p.R748S 0.32 tolerated(0.08) probably_damaging(0.998) TCGA-22-4609-01 13 86369313 86369313 T A SLITRK6 Missense_Mutation p.Y444F 0.15 deleterious(0.04) benign(0.09) TCGA-22-4609-01 14 20345371 20345371 G C OR4K2 Nonstop_Mutation p.*315Yext*3 0.12 TCGA-22-4609-01 14 22466185 22466185 G A TRAV17 Missense_Mutation p.A39T 0.29 tolerated(0.53) possibly_damaging(0.564) TCGA-22-4609-01 14 22749493 22749493 C A TRAV38-2DV8 Missense_Mutation p.Q71K 0.16 deleterious(0.01) probably_damaging(0.99) TCGA-22-4609-01 14 23871670 23871670 C A MYH6 Intron 0.17 TCGA-22-4609-01 14 32624054 32624054 G C ARHGAP5 Missense_Mutation p.G1470A 0.19 tolerated_low_confidence(1) benign(0.004) TCGA-22-4609-01 14 55529512 55529512 A T MAPK1IP1L Silent p.G65G 0.24 TCGA-22-4609-01 14 77844152 77844152 A G SAMD15 Missense_Mutation p.K131E 0.17 tolerated(1) benign(0) TCGA-22-4609-01 15 22332576 22332576 C A RP11-69H14.6 RNA 0.09 TCGA-22-4609-01 15 22369212 22369212 G C OR4M2 Missense_Mutation p.A213P 0.11 deleterious(0.01) probably_damaging(0.966) TCGA-22-4609-01 15 23890410 23890410 C A MAGEL2 Missense_Mutation p.C224F 0.15 deleterious(0) benign(0.357) TCGA-22-4609-01 15 23932283 23932283 C T NDN Missense_Mutation p.V28I 0.24 tolerated_low_confidence(0.81) benign(0.001) TCGA-22-4609-01 15 35155082 35155082 G A AQR Missense_Mutation p.P1339S 0.17 tolerated(0.13) benign(0.022) TCGA-22-4609-01 15 65916537 65916537 A G SLC24A1 Missense_Mutation p.H40R 0.18 possibly_damaging(0.507) TCGA-22-4609-01 15 72699000 72699000 G T TMEM202 Missense_Mutation p.G132V 0.19 tolerated(0.53) benign(0.012) TCGA-22-4609-01 15 75586321 75586321 G T GOLGA6D Missense_Mutation p.D588Y 0.13 tolerated(0.11) benign(0.153) TCGA-22-4609-01 15 78463811 78463811 G T ACSBG1 Missense_Mutation p.S717Y 0.12 deleterious(0.01) possibly_damaging(0.691) TCGA-22-4609-01 15 78463812 78463812 A T ACSBG1 Missense_Mutation p.S717T 0.12 tolerated(0.14) benign(0.14) TCGA-22-4609-01 15 79750146 79750146 A T KIAA1024 Nonsense_Mutation p.K553* 0.25 TCGA-22-4609-01 16 17232282 17232282 T C XYLT1 Missense_Mutation p.Y565C 0.16 deleterious(0) probably_damaging(0.994) TCGA-22-4609-01 16 20439190 20439190 G T ACSM5 Splice_Site p.X334_splice 0.20 TCGA-22-4609-01 16 20451707 20451707 G T ACSM5 Missense_Mutation p.K566N 0.14 deleterious(0) possibly_damaging(0.875) TCGA-22-4609-01 16 20635438 20635438 G A ACSM1 Missense_Mutation p.P543S 0.16 deleterious(0) probably_damaging(0.999) TCGA-22-4609-01 16 21045352 21045352 C T DNAH3 Missense_Mutation p.G1714D 0.17 deleterious(0) probably_damaging(0.95) TCGA-22-4609-01 16 23676993 23676993 C T DCTN5 Missense_Mutation p.T132I 0.21 deleterious(0) probably_damaging(0.917) TCGA-22-4609-01 16 67315477 67315477 C T PLEKHG4 Missense_Mutation p.A274V 0.14 tolerated(0.9) benign(0.005) TCGA-22-4609-01 16 70514904 70514904 T A COG4 3'UTR 0.32 TCGA-22-4609-01 16 74927578 74927578 T A WDR59 Missense_Mutation p.I667L 0.20 tolerated(0.09) benign(0.001) TCGA-22-4609-01 17 10227543 10227543 T A MYH13 Missense_Mutation p.E910D 0.25 tolerated(0.77) benign(0.007) TCGA-22-4609-01 17 10442538 10442538 C A MYH2 Missense_Mutation p.G467V 0.26 deleterious(0) probably_damaging(0.995) TCGA-22-4609-01 17 19317792 19317792 A T RNF112 Nonsense_Mutation p.K303* 0.16 TCGA-22-4609-01 17 20796728 20796728 C A CCDC144NL Missense_Mutation p.S131I 0.26 deleterious_low_confidence(0.02) benign(0.047) TCGA-22-4609-01 17 39661450 39661450 T C KRT13 Missense_Mutation p.Y118C 0.33 deleterious(0) probably_damaging(1) TCGA-22-4609-01 17 51901010 51901010 C T KIF2B Silent p.L206L 0.42 TCGA-22-4609-01 17 59560621 59560621 A T TBX4 Missense_Mutation p.Q461L 0.32 deleterious_low_confidence(0.02) benign(0.05) TCGA-22-4609-01 17 67285407 67285407 G A ABCA5 Nonsense_Mutation p.Q605* 0.50 TCGA-22-4609-01 17 73998217 73998217 C A CDK3 Silent p.L103L 0.43 TCGA-22-4609-01 17 7579495 7579495 G - TP53 Frame_Shift_Del p.R65Efs*58 0.19 TCGA-22-4609-01 18 40857320 40857320 C A SYT4 5'UTR 0.24 TCGA-22-4609-01 19 15547788 15547788 T C WIZ Missense_Mutation p.I120V 0.22 tolerated(0.51) benign(0.003) TCGA-22-4609-01 19 35850557 35850557 G T FFAR3 Silent p.P255P 0.11 TCGA-22-4609-01 19 36050936 36050936 G A ATP4A Missense_Mutation p.T276I 0.20 deleterious(0) probably_damaging(0.998) TCGA-22-4609-01 19 36321825 36321825 G T NPHS1 Missense_Mutation p.P1172H 0.15 tolerated(0.05) possibly_damaging(0.546) TCGA-22-4609-01 19 37976092 37976092 A C ZNF570 Missense_Mutation p.E523A 0.19 deleterious(0) benign(0.029) TCGA-22-4609-01 19 49557794 49557794 G A CGB7 Silent p.F84F 0.35 TCGA-22-4609-01 19 49714833 49714833 C G TRPM4 3'UTR 0.16 TCGA-22-4609-01 19 50188190 50188190 G A PRMT1 Missense_Mutation p.V219M 0.18 deleterious(0.04) probably_damaging(0.963) TCGA-22-4609-01 19 51329904 51329904 C A KLK15 Silent p.A197A 0.20 TCGA-22-4609-01 19 51768834 51768834 G A SIGLECL1 Missense_Mutation p.G79S 0.20 tolerated(0.15) benign(0.337) TCGA-22-4609-01 19 54257354 54257354 A T MIR527 RNA 0.20 TCGA-22-4609-01 19 9526372 9526372 C A ZNF266 Missense_Mutation p.Q54H 0.19 tolerated(0.06) benign(0.002) TCGA-22-4609-01 1 155174708 155174708 A G THBS3 Missense_Mutation p.M195T 0.17 deleterious(0.01) benign(0.039) TCGA-22-4609-01 1 159558561 159558561 A G APCS 3'UTR 0.29 TCGA-22-4609-01 1 160105237 160105237 C A ATP1A2 Missense_Mutation p.A710D 0.24 deleterious(0) probably_damaging(1) TCGA-22-4609-01 1 171481304 171481304 A C PRRC2C Missense_Mutation p.Y26S 0.22 unknown(0) TCGA-22-4609-01 1 176845693 176845693 A G ASTN1 Missense_Mutation p.V1148A 0.14 deleterious(0.01) probably_damaging(0.914) TCGA-22-4609-01 1 176934321 176934321 G A ASTN1 Nonsense_Mutation p.Q526* 0.25 TCGA-22-4609-01 1 186008864 186008864 C A HMCN1 Silent p.A2011A 0.17 TCGA-22-4609-01 1 19018401 19018401 G T PAX7 Missense_Mutation p.R247L 0.41 deleterious(0) possibly_damaging(0.737) TCGA-22-4609-01 1 196871578 196871578 A T CFHR4 Missense_Mutation p.Q29L 0.16 deleterious(0.04) possibly_damaging(0.796) TCGA-22-4609-01 1 197890592 197890592 G T LHX9 Missense_Mutation p.S179I 0.24 tolerated(0.1) benign(0.102) TCGA-22-4609-01 1 198677319 198677319 T A PTPRC Missense_Mutation p.I321N 0.15 deleterious(0) possibly_damaging(0.883) TCGA-22-4609-01 1 201751645 201751645 C A NAV1 Missense_Mutation p.Q669K 0.18 deleterious(0) probably_damaging(0.997) TCGA-22-4609-01 1 201777565 201777565 C T NAV1 Missense_Mutation p.P1289S 0.16 tolerated(0.48) benign(0.002) TCGA-22-4609-01 1 207870875 207870875 A T CR1L Missense_Mutation p.H297L 0.23 deleterious(0) probably_damaging(0.97) TCGA-22-4609-01 1 210577853 210577853 A G HHAT Missense_Mutation p.T173A 0.23 deleterious(0.03) possibly_damaging(0.646) TCGA-22-4609-01 1 222798163 222798163 A G MIA3 Silent p.E107E 0.18 TCGA-22-4609-01 1 237993870 237993870 A T RYR2 Missense_Mutation p.D4899V 0.16 probably_damaging(0.937) TCGA-22-4609-01 1 240497523 240497523 T C FMN2 Silent p.L1587L 0.15 TCGA-22-4609-01 1 248084331 248084331 G T OR2T8 Silent p.G4G 0.11 TCGA-22-4609-01 1 248202178 248202178 C T OR2L2 Silent p.T203T 0.20 TCGA-22-4609-01 1 29647307 29647307 C T PTPRU Silent p.L1276L 0.20 TCGA-22-4609-01 1 37499717 37499717 C G GRIK3 5'UTR 0.21 TCGA-22-4609-01 1 3786168 3786168 G A DFFB Splice_Site p.X171_splice 0.36 TCGA-22-4609-01 1 43316931 43316931 C A ZNF691 Missense_Mutation p.T132K 0.40 tolerated(1) possibly_damaging(0.876) TCGA-22-4609-01 1 53995491 53995491 G A GLIS1 Silent p.A310A 0.13 TCGA-22-4609-01 1 79115932 79115932 C T IFI44 Missense_Mutation p.H18Y 0.23 tolerated(0.87) benign(0.001) TCGA-22-4609-01 21 22790886 22790886 G T NCAM2 Missense_Mutation p.A493S 0.28 deleterious(0.04) probably_damaging(0.999) TCGA-22-4609-01 21 45846546 45846546 G T TRPM2 Nonsense_Mutation p.E1267* 0.39 TCGA-22-4609-01 22 24916379 24916379 C T UPB1 Silent p.A272A 0.09 TCGA-22-4609-01 22 32625264 32625264 G T SLC5A4 Missense_Mutation p.N399K 0.23 deleterious(0) probably_damaging(0.936) TCGA-22-4609-01 22 46125468 46125468 G A ATXN10 Missense_Mutation p.E298K 0.17 deleterious(0.04) benign(0.049) TCGA-22-4609-01 2 116101476 116101476 C G DPP10 Missense_Mutation p.R91G 0.23 deleterious(0.01) benign(0.203) TCGA-22-4609-01 2 128622681 128622681 T C AMMECR1L Missense_Mutation p.N307S 0.19 deleterious_low_confidence(0.02) benign(0.311) TCGA-22-4609-01 2 131520366 131520366 C A AMER3 Missense_Mutation p.L241I 0.17 deleterious(0) probably_damaging(1) TCGA-22-4609-01 2 136598373 136598373 T C MCM6 3'UTR 0.16 TCGA-22-4609-01 2 136603901 136603901 T C MCM6 Silent p.Q705Q 0.19 TCGA-22-4609-01 2 141777672 141777672 C A LRP1B Splice_Site p.X597_splice 0.23 TCGA-22-4609-01 2 150071242 150071242 G A LYPD6B 3'UTR 0.22 TCGA-22-4609-01 2 172725255 172725255 C G SLC25A12 Missense_Mutation p.D49H 0.18 tolerated(0.08) benign(0.322) TCGA-22-4609-01 2 179414389 179414389 C G TTN Missense_Mutation p.G30687A 0.25 TCGA-22-4609-01 2 179455249 179455249 G A TTN Silent p.S20401S 0.16 TCGA-22-4609-01 2 179469610 179469610 G T TTN Missense_Mutation p.P18069Q 0.22 TCGA-22-4609-01 2 1805545 1805545 G C MYT1L Missense_Mutation p.Q1065E 0.21 deleterious(0) benign(0.373) TCGA-22-4609-01 2 190531849 190531849 G T ASNSD1 Missense_Mutation p.D331Y 0.17 deleterious(0) probably_damaging(1) TCGA-22-4609-01 2 197986165 197986165 T A ANKRD44 Missense_Mutation p.N266I 0.14 deleterious(0) probably_damaging(0.978) TCGA-22-4609-01 2 198436945 198436945 G T RFTN2 Silent p.I431I 0.18 TCGA-22-4609-01 2 200137051 200137051 C A SATB2 Silent p.L695L 0.27 TCGA-22-4609-01 2 207169451 207169451 G T ZDBF2 Missense_Mutation p.D67Y 0.16 deleterious(0.01) benign(0.102) TCGA-22-4609-01 2 228497776 228497776 C A C2orf83 Missense_Mutation p.G9V 0.23 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-22-4609-01 2 240036836 240036836 A G HDAC4 Silent p.I563I 0.14 TCGA-22-4609-01 2 46611713 46611713 G T EPAS1 Missense_Mutation p.D843Y 0.12 deleterious(0) probably_damaging(0.992) TCGA-22-4609-01 2 74177832 74177832 C T DGUOK Silent p.G188G 0.17 TCGA-22-4609-01 2 79364020 79364020 C A REG1P RNA 0.16 TCGA-22-4609-01 2 79364022 79364022 A T REG1P RNA 0.16 TCGA-22-4609-01 2 80874810 80874810 A T CTNNA2 Missense_Mutation p.K844M 0.15 deleterious(0) possibly_damaging(0.511) TCGA-22-4609-01 3 108403077 108403077 A G DZIP3 Silent p.L966L 0.13 TCGA-22-4609-01 3 109046623 109046623 T C DPPA4 3'UTR 0.17 TCGA-22-4609-01 3 112650011 112650011 G A CD200R1 Silent p.S48S 0.31 TCGA-22-4609-01 3 120500104 120500104 G T GTF2E1 Silent p.P369P 0.17 TCGA-22-4609-01 3 121396149 121396149 C A GOLGB1 Missense_Mutation p.V3008L 0.36 benign(0.021) TCGA-22-4609-01 3 122420179 122420179 T C PARP14 Silent p.F926F 0.13 TCGA-22-4609-01 3 148552403 148552403 A C CPB1 Missense_Mutation p.Q89P 0.18 tolerated(0.48) benign(0.003) TCGA-22-4609-01 3 155615746 155615746 T C GMPS Silent p.S80S 0.18 TCGA-22-4609-01 3 156866095 156866095 C G CCNL1 Missense_Mutation p.E506Q 0.15 tolerated(0.1) unknown(0) TCGA-22-4609-01 3 18390872 18390872 C G SATB1 Missense_Mutation p.Q726H 0.27 deleterious(0.02) probably_damaging(0.959) TCGA-22-4609-01 3 3189169 3189169 A G TRNT1 Missense_Mutation p.K280E 0.26 tolerated(0.48) benign(0.009) TCGA-22-4609-01 3 32188204 32188204 T C GPD1L Missense_Mutation p.V199A 0.24 deleterious(0.04) benign(0.393) TCGA-22-4609-01 3 40529126 40529126 A T ZNF619 Missense_Mutation p.K415N 0.15 tolerated(0.42) possibly_damaging(0.453) TCGA-22-4609-01 3 65342234 65342234 C T MAGI1 Missense_Mutation p.R1403H 0.17 deleterious_low_confidence(0) unknown(0) TCGA-22-4609-01 3 9908781 9908794 GTCCTTCACTGGGG - CIDEC 3'UTR 0.13 TCGA-22-4609-01 4 107229978 107229978 G A TBCK Missense_Mutation p.T47I 0.22 deleterious(0.01) possibly_damaging(0.76) TCGA-22-4609-01 4 122853862 122853862 C A TRPC3 Missense_Mutation p.S184I 0.14 deleterious(0) probably_damaging(0.997) TCGA-22-4609-01 4 159092471 159092471 G C FAM198B Missense_Mutation p.C19W 0.12 deleterious(0.02) benign(0.08) TCGA-22-4609-01 4 164246518 164246519 - A NPY1R Frame_Shift_Ins p.L364Ffs*10 0.20 TCGA-22-4609-01 4 164450122 164450122 G C MARCH1 Nonsense_Mutation p.Y216* 0.25 TCGA-22-4609-01 4 174225177 174225177 G T GALNT7 Missense_Mutation p.V433F 0.14 deleterious(0) probably_damaging(0.992) TCGA-22-4609-01 4 49030735 49030735 C A CWH43 Missense_Mutation p.H452Q 0.19 tolerated(1) benign(0) TCGA-22-4609-01 4 52938099 52938099 G T SPATA18 Missense_Mutation p.A179S 0.24 tolerated(0.23) probably_damaging(0.971) TCGA-22-4609-01 4 70156329 70156329 T C UGT2B28 Silent p.A370A 0.28 TCGA-22-4609-01 4 76439564 76439564 C A RCHY1 5'UTR 0.35 TCGA-22-4609-01 4 90034273 90034273 G A TIGD2 Missense_Mutation p.E50K 0.17 tolerated(0.36) possibly_damaging(0.861) TCGA-22-4609-01 5 110409305 110409305 G A TSLP Missense_Mutation p.A105T 0.22 tolerated(1) benign(0.002) TCGA-22-4609-01 5 135692352 135692352 C A TRPC7 Missense_Mutation p.A242S 0.18 deleterious(0) probably_damaging(0.998) TCGA-22-4609-01 5 13735319 13735319 C A DNAH5 Silent p.L3894L 0.08 TCGA-22-4609-01 5 169533459 169533459 C T FOXI1 Silent p.G166G 0.34 TCGA-22-4609-01 5 178548666 178548666 C A ADAMTS2 Silent p.S1058S 0.22 TCGA-22-4609-01 5 23510098 23510098 C A PRDM9 Missense_Mutation p.T88K 0.39 deleterious_low_confidence(0) benign(0.013) TCGA-22-4609-01 5 23510099 23510099 A T PRDM9 Silent p.T88T 0.39 TCGA-22-4609-01 5 35954267 35954267 A G UGT3A1 3'UTR 0.42 TCGA-22-4609-01 5 45353333 45353333 G C HCN1 Missense_Mutation p.Q416E 0.42 tolerated(0.34) benign(0.003) TCGA-22-4609-01 5 52358679 52358679 G T ITGA2 Missense_Mutation p.V508L 0.27 tolerated(0.64) probably_damaging(0.999) TCGA-22-4609-01 5 55081574 55081574 A G DDX4 Missense_Mutation p.I247V 0.32 tolerated(1) benign(0.001) TCGA-22-4609-01 5 94208858 94208858 A C MCTP1 Missense_Mutation p.N674K 0.30 deleterious(0.03) probably_damaging(1) TCGA-22-4609-01 5 94208885 94208885 G T MCTP1 Silent p.V665V 0.28 TCGA-22-4609-01 6 100062080 100062080 C T PRDM13 Silent p.A523A 0.15 TCGA-22-4609-01 6 110429848 110429848 C T WASF1 Missense_Mutation p.R102Q 0.20 deleterious(0) unknown(0) TCGA-22-4609-01 6 118596622 118596622 G T SLC35F1 Missense_Mutation p.G213V 0.19 deleterious(0.02) probably_damaging(0.958) TCGA-22-4609-01 6 123539816 123539816 G A TRDN Missense_Mutation p.T707I 0.19 deleterious_low_confidence(0) probably_damaging(0.915) TCGA-22-4609-01 6 127836012 127836012 C G SOGA3 Missense_Mutation p.E428Q 0.26 tolerated(0.79) benign(0.023) TCGA-22-4609-01 6 130399715 130399715 A T L3MBTL3 Silent p.S419S 0.16 TCGA-22-4609-01 6 131222103 131222103 T A EPB41L2 Missense_Mutation p.R383W 0.16 deleterious(0) probably_damaging(0.996) TCGA-22-4609-01 6 133052603 133052603 G T VNN3 Intron 0.21 TCGA-22-4609-01 6 133097476 133097476 A G SLC18B1 Silent p.D296D 0.11 TCGA-22-4609-01 6 144167245 144167245 G T LTV1 Missense_Mutation p.D65Y 0.14 deleterious(0) probably_damaging(0.989) TCGA-22-4609-01 6 150322799 150322799 G A RAET1K RNA 0.11 TCGA-22-4609-01 6 155635598 155635598 C T TFB1M 5'UTR 0.21 TCGA-22-4609-01 6 165723068 165723068 T A C6orf118 Missense_Mutation p.E3V 0.14 deleterious_low_confidence(0.04) benign(0.067) TCGA-22-4609-01 6 168430301 168430301 G A KIF25 Silent p.K12K 0.09 TCGA-22-4609-01 6 32189048 32189048 C A NOTCH4 Missense_Mutation p.G169V 0.22 deleterious(0) probably_damaging(1) TCGA-22-4609-01 6 64423433 64423433 A G PHF3 Silent p.G1983G 0.24 TCGA-22-4609-01 6 89913156 89913156 G A GABRR1 Silent p.V57V 0.15 TCGA-22-4609-01 7 11500362 11500362 T A THSD7A Missense_Mutation p.Q844H 0.36 tolerated(0.55) benign(0.086) TCGA-22-4609-01 7 123593945 123593945 A T SPAM1 Silent p.G107G 0.20 TCGA-22-4609-01 7 130561504 130561504 T C MIR29A 3'Flank 0.39 TCGA-22-4609-01 7 131815313 131815313 G A PLXNA4 Silent p.H1870H 0.13 TCGA-22-4609-01 7 137151677 137151677 C A DGKI Intron 0.34 TCGA-22-4609-01 7 146536995 146536995 G T CNTNAP2 Missense_Mutation p.W134L 0.41 tolerated(0.05) possibly_damaging(0.652) TCGA-22-4609-01 7 158557513 158557513 T A ESYT2 Missense_Mutation p.Q367L 0.39 deleterious(0.03) benign(0.007) TCGA-22-4609-01 7 55220295 55220295 A T EGFR Missense_Mutation p.S229C 0.38 deleterious(0) probably_damaging(0.911) TCGA-22-4609-01 7 63809234 63809234 T G ZNF736 Missense_Mutation p.H331Q 0.36 deleterious(0) probably_damaging(1) TCGA-22-4609-01 7 64169056 64169056 A G ZNF107 3'UTR 0.45 TCGA-22-4609-01 8 10159111 10159111 G T MSRA Silent p.L133L 0.19 TCGA-22-4609-01 8 110530521 110530521 T C PKHD1L1 Missense_Mutation p.F3939L 0.36 tolerated(0.17) benign(0.05) TCGA-22-4609-01 8 117955015 117955015 G C AARD 3'UTR 0.08 TCGA-22-4609-01 8 124359429 124359429 C T ATAD2 Silent p.V705V 0.33 TCGA-22-4609-01 8 130861576 130861576 T C FAM49B Silent p.S251S 0.25 TCGA-22-4609-01 8 139638443 139638443 G T COL22A1 Missense_Mutation p.P1236H 0.35 unknown(0) TCGA-22-4609-01 8 139895400 139895400 C A COL22A1 Missense_Mutation p.G6W 0.46 benign(0.058) TCGA-22-4609-01 8 145698020 145698021 - C KIFC2 Frame_Shift_Ins p.R599Pfs*221 0.21 TCGA-22-4609-01 8 21995907 21995907 T G REEP4 3'UTR 0.33 TCGA-22-4609-01 8 3000112 3000112 G T CSMD1 Missense_Mutation p.P2039H 0.27 possibly_damaging(0.754) TCGA-22-4609-01 8 59488462 59488462 T C SDCBP Silent p.L82L 0.09 TCGA-22-4609-01 8 70978584 70978584 G C PRDM14 Missense_Mutation p.H357D 0.16 tolerated(0.2) benign(0.085) TCGA-22-4609-01 8 77618533 77618533 A C ZFHX4 Missense_Mutation p.Q737P 0.18 benign(0.293) TCGA-22-4609-01 9 103055282 103055282 A G INVS Missense_Mutation p.K915E 0.20 tolerated_low_confidence(0.06) benign(0.008) TCGA-22-4609-01 9 112642901 112642901 G T PALM2-AKAP2 Missense_Mutation p.R66M 0.17 deleterious(0) possibly_damaging(0.634) TCGA-22-4609-01 9 127115864 127115864 C G PSMB7 3'UTR 0.37 TCGA-22-4609-01 9 130511860 130511860 G A SH2D3C Missense_Mutation p.R257C 0.53 deleterious(0) probably_damaging(1) TCGA-22-4609-01 9 131088119 131088119 G A COQ4 Missense_Mutation p.G121S 0.07 tolerated(0.06) possibly_damaging(0.702) TCGA-22-4609-01 9 136319625 136319625 G A ADAMTS13 Missense_Mutation p.G1045S 0.13 deleterious(0.03) possibly_damaging(0.863) TCGA-22-4609-01 9 20948369 20948369 T A FOCAD Missense_Mutation p.W1259R 0.19 deleterious(0) probably_damaging(1) TCGA-22-4609-01 9 5570178 5570178 C T PDCD1LG2 3'UTR 0.20 TCGA-22-4609-01 9 69420374 69420374 G T ANKRD20A4 Missense_Mutation p.G422W 0.07 deleterious(0.01) possibly_damaging(0.675) TCGA-22-4609-01 9 70993171 70993171 C T PGM5 Silent p.C106C 0.09 TCGA-22-4609-01 9 96024132 96024132 G A WNK2 Missense_Mutation p.V1035I 0.26 unknown(0) TCGA-22-4609-01 X 101623756 101623756 G T NXF2B Silent p.P202P 0.15 TCGA-22-4609-01 X 152031180 152031180 G T NSDHL Missense_Mutation p.G152V 0.46 deleterious(0) probably_damaging(0.999) TCGA-22-4609-01 X 34150131 34150131 C A FAM47A Missense_Mutation p.D89Y 0.27 deleterious(0.04) probably_damaging(0.977) TCGA-22-4609-01 X 55046773 55046773 G A ALAS2 Missense_Mutation p.T268I 0.57 deleterious(0.01) probably_damaging(0.999) TCGA-22-4609-01 X 66863241 66863241 C G AR Missense_Mutation p.A587G 0.29 deleterious(0) probably_damaging(0.974) TCGA-22-4609-01 X 73047235 73047235 G T XIST RNA 0.65 TCGA-22-4609-01 X 88008580 88008580 A T CPXCR1 Silent p.T55T 0.52 TCGA-22-4609-01 X 91132696 91132696 C T PCDH11X Missense_Mutation p.T486M 0.20 tolerated(0.12) probably_damaging(0.994) TCGA-22-4613-01 10 102568959 102568959 C A PAX2 Missense_Mutation p.N318K 0.34 deleterious(0.01) benign(0.326) TCGA-22-4613-01 10 102986948 102986948 C A LBX1 3'UTR 0.42 TCGA-22-4613-01 10 1043070 1043070 G T GTPBP4 Intron 0.36 TCGA-22-4613-01 10 108337163 108337163 C A SORCS1 Intron 0.43 TCGA-22-4613-01 10 112360876 112360876 G T SMC3 Missense_Mutation p.A878S 0.41 tolerated(0.7) benign(0.055) TCGA-22-4613-01 10 115991305 115991305 G A TDRD1 3'UTR 0.46 TCGA-22-4613-01 10 122659586 122659586 C A WDR11 Missense_Mutation p.A854D 0.04 tolerated(0.45) benign(0.288) TCGA-22-4613-01 10 128114630 128114630 T A C10orf90 Missense_Mutation p.K664M 0.54 deleterious(0) probably_damaging(0.999) TCGA-22-4613-01 10 13222487 13222487 C A MCM10 Silent p.G271G 0.45 TCGA-22-4613-01 10 15686082 15686082 C A ITGA8 Missense_Mutation p.G449V 0.37 tolerated(0.1) probably_damaging(1) TCGA-22-4613-01 10 16967596 16967596 C A CUBN Missense_Mutation p.G2150V 0.32 deleterious(0) probably_damaging(1) TCGA-22-4613-01 10 17277176 17277176 C A VIM Silent p.S339S 0.31 TCGA-22-4613-01 10 17277177 17277177 C A VIM Missense_Mutation p.L340M 0.33 deleterious(0.01) possibly_damaging(0.544) TCGA-22-4613-01 10 22830743 22830743 C A PIP4K2A Missense_Mutation p.K342N 0.34 tolerated(0.18) benign(0.048) TCGA-22-4613-01 10 23248058 23248058 G C ARMC3 Missense_Mutation p.A118P 0.12 deleterious(0.01) possibly_damaging(0.822) TCGA-22-4613-01 10 37421233 37421233 G A ANKRD30A Silent p.L136L 0.07 TCGA-22-4613-01 10 45429098 45429098 T A TMEM72 Missense_Mutation p.S75T 0.14 tolerated(0.07) probably_damaging(0.986) TCGA-22-4613-01 10 45602582 45602582 T A RSU1P2 RNA 0.33 TCGA-22-4613-01 10 50369581 50369581 A T C10orf128 Intron 0.35 TCGA-22-4613-01 10 50574253 50574253 G A DRGX Missense_Mutation p.P239S 0.35 deleterious_low_confidence(0.05) benign(0.01) TCGA-22-4613-01 10 50732541 50732541 T - ERCC6-PGBD3 Frame_Shift_Del p.N312Tfs*17 0.34 TCGA-22-4613-01 10 55582895 55582895 C A PCDH15 Nonsense_Mutation p.E1533* 0.31 TCGA-22-4613-01 10 55582896 55582896 C A PCDH15 Missense_Mutation p.K1532N 0.29 tolerated_low_confidence(0.31) benign(0.002) TCGA-22-4613-01 10 55782699 55782699 G T PCDH15 Missense_Mutation p.L827I 0.11 tolerated(0.4) benign(0.008) TCGA-22-4613-01 10 61022354 61022354 G C FAM13C Missense_Mutation p.P359R 0.29 tolerated(0.28) benign(0.007) TCGA-22-4613-01 10 61830138 61830138 G A ANK3 Nonsense_Mutation p.Q3501* 0.35 TCGA-22-4613-01 10 63195965 63195965 G A TMEM26 Missense_Mutation p.P78L 0.24 deleterious(0) probably_damaging(1) TCGA-22-4613-01 10 67726488 67726488 C A CTNNA3 Missense_Mutation p.C761F 0.21 deleterious(0.01) unknown(0) TCGA-22-4613-01 10 69881321 69881321 C T MYPN Silent p.C42C 0.50 TCGA-22-4613-01 10 69961674 69961674 C T MYPN Silent p.R1194R 0.19 TCGA-22-4613-01 10 70775952 70775952 G T KIAA1279 Missense_Mutation p.R549L 0.20 tolerated(0.19) benign(0.192) TCGA-22-4613-01 10 71332486 71332486 G C NEUROG3 Missense_Mutation p.A105G 0.23 deleterious(0) benign(0.344) TCGA-22-4613-01 10 98109555 98109555 G T OPALIN Missense_Mutation p.A34E 0.59 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-22-4613-01 11 102272392 102272392 T C TMEM123 Silent p.K160K 0.15 TCGA-22-4613-01 11 1085941 1085941 G A MUC2 Silent p.T927T 0.31 TCGA-22-4613-01 11 113283559 113283559 C T DRD2 Missense_Mutation p.S286N 0.39 tolerated(0.35) benign(0.02) TCGA-22-4613-01 11 11373616 11373616 C T CSNK2A3 Missense_Mutation p.V351M 0.30 tolerated_low_confidence(1) benign(0.001) TCGA-22-4613-01 11 11373713 11373713 G T CSNK2A3 Silent p.A318A 0.23 TCGA-22-4613-01 11 11373900 11373900 C T CSNK2A3 Missense_Mutation p.G256D 0.24 tolerated(0.72) benign(0) TCGA-22-4613-01 11 114401156 114401156 G T NXPE1 Missense_Mutation p.L50I 0.39 deleterious(0.03) probably_damaging(0.967) TCGA-22-4613-01 11 123676935 123676935 G T OR6M1 Silent p.I41I 0.15 TCGA-22-4613-01 11 123810615 123810615 C A OR4D5 Missense_Mutation p.L98M 0.13 tolerated(1) probably_damaging(0.996) TCGA-22-4613-01 11 123813951 123813951 C A OR6T1 Missense_Mutation p.A199S 0.32 tolerated(0.7) benign(0.012) TCGA-22-4613-01 11 123813952 123813952 C A OR6T1 Silent p.V198V 0.33 TCGA-22-4613-01 11 123893777 123893777 G T OR10G9 Missense_Mutation p.G20W 0.08 deleterious(0) benign(0.325) TCGA-22-4613-01 11 123909651 123909651 C A OR10G7 Missense_Mutation p.G20W 0.23 deleterious(0) benign(0.325) TCGA-22-4613-01 11 124440904 124440904 A G OR8A1 Missense_Mutation p.K314E 0.33 deleterious(0) benign(0.41) TCGA-22-4613-01 11 124748011 124748011 G A ROBO3 Nonsense_Mutation p.W1055* 0.32 TCGA-22-4613-01 11 124908348 124908348 A T CCDC15 Missense_Mutation p.Q811H 0.17 deleterious(0.03) possibly_damaging(0.752) TCGA-22-4613-01 11 125548074 125548074 C G ACRV1 Missense_Mutation p.E57D 0.40 tolerated(0.2) benign(0.163) TCGA-22-4613-01 11 1264913 1264913 C A MUC5B Missense_Mutation p.P2268Q 0.19 benign(0.334) TCGA-22-4613-01 11 17427074 17427074 G T ABCC8 Missense_Mutation p.N1122K 0.33 deleterious(0) probably_damaging(0.955) TCGA-22-4613-01 11 26663521 26663521 T C ANO3 Silent p.D740D 0.28 TCGA-22-4613-01 11 30032759 30032759 G T KCNA4 Silent p.V489V 0.22 TCGA-22-4613-01 11 32126043 32126043 A T RCN1 3'UTR 0.33 TCGA-22-4613-01 11 40137001 40137001 A T LRRC4C Nonsense_Mutation p.L281* 0.27 TCGA-22-4613-01 11 47436551 47436551 C T SLC39A13 Intron 0.32 TCGA-22-4613-01 11 49974693 49974693 C - OR4C13 Frame_Shift_Del p.H241Tfs*17 0.27 TCGA-22-4613-01 11 51411688 51411688 G - OR4A5 Frame_Shift_Del p.C237Afs*32 0.27 TCGA-22-4613-01 11 5274433 5274433 C A HBG2 3'UTR 0.29 TCGA-22-4613-01 11 5274532 5274532 C G HBG2 Missense_Mutation p.S140T 0.33 tolerated(0.49) benign(0) TCGA-22-4613-01 11 5289722 5289722 C A HBE1 Missense_Mutation p.A141S 0.33 tolerated(0.08) benign(0.303) TCGA-22-4613-01 11 5322367 5322367 G - OR51B4 Frame_Shift_Del p.I271Lfs*3 0.21 TCGA-22-4613-01 11 5475566 5475566 T A OR51I2 Missense_Mutation p.V283E 0.29 deleterious(0) probably_damaging(0.999) TCGA-22-4613-01 11 55340461 55340461 G T OR4C16 Silent p.T286T 0.16 TCGA-22-4613-01 11 55904850 55904850 C A OR8J3 Silent p.L115L 0.30 TCGA-22-4613-01 11 56127763 56127763 T A OR8J1 Missense_Mutation p.L14H 0.27 deleterious(0) probably_damaging(0.98) TCGA-22-4613-01 11 56230176 56230176 C G OR5M9 Missense_Mutation p.K234N 0.40 deleterious(0) probably_damaging(0.967) TCGA-22-4613-01 11 56510333 56510333 C A OR9G4 Missense_Mutation p.A319S 0.27 tolerated(0.27) benign(0.169) TCGA-22-4613-01 11 57106060 57106060 C A P2RX3 Silent p.T12T 0.29 TCGA-22-4613-01 11 58126131 58126131 C A OR5B17 Missense_Mutation p.V138L 0.23 deleterious_low_confidence(0.04) possibly_damaging(0.517) TCGA-22-4613-01 11 58190356 58190356 G T OR5B2 Missense_Mutation p.P127T 0.18 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-22-4613-01 11 58206901 58206901 G T OR5B12 Missense_Mutation p.H242N 0.28 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-22-4613-01 11 60183926 60183926 G T MS4A14 Missense_Mutation p.L528F 0.31 tolerated(0.7) benign(0.083) TCGA-22-4613-01 11 61071505 61071505 C T DDB1 Silent p.V888V 0.25 TCGA-22-4613-01 11 64939436 64939436 C T SPDYC Silent p.F74F 0.31 TCGA-22-4613-01 11 64940209 64940209 C G SPDYC Missense_Mutation p.H191D 0.29 deleterious(0) probably_damaging(0.998) TCGA-22-4613-01 11 65267822 65267822 A C MALAT1 RNA 0.33 TCGA-22-4613-01 11 65375242 65375242 A G MAP3K11 Missense_Mutation p.I372T 0.36 deleterious(0.01) probably_damaging(0.987) TCGA-22-4613-01 11 6648620 6648620 C G DCHS1 Missense_Mutation p.A1884P 0.37 deleterious(0.04) benign(0.167) TCGA-22-4613-01 11 68216404 68216404 C A LRP5 Missense_Mutation p.P1572T 0.42 deleterious(0.01) probably_damaging(0.986) TCGA-22-4613-01 11 6891618 6891618 C A OR10A2 Silent p.A211A 0.26 TCGA-22-4613-01 11 7064725 7064725 A G NLRP14 Missense_Mutation p.M490V 0.27 deleterious(0.05) benign(0.015) TCGA-22-4613-01 11 71146795 71146795 G T DHCR7 Silent p.R352R 0.41 TCGA-22-4613-01 11 71293713 71293713 A T KRTAP5-11 Nonsense_Mutation p.C57* 0.26 TCGA-22-4613-01 11 73022174 73022174 C T ARHGEF17 Missense_Mutation p.P831S 0.21 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-22-4613-01 11 76869394 76869394 G T MYO7A Silent p.V307V 0.31 TCGA-22-4613-01 11 77937952 77937952 G T GAB2 Silent p.R256R 0.35 TCGA-22-4613-01 11 84028054 84028054 C - DLG2 Intron 0.23 TCGA-22-4613-01 11 88386499 88386499 C T GRM5 Silent p.K328K 0.19 TCGA-22-4613-01 11 88911881 88911881 G A TYR Missense_Mutation p.G254S 0.12 tolerated(0.32) probably_damaging(0.954) TCGA-22-4613-01 11 92085270 92085270 T C FAT3 5'UTR 0.44 TCGA-22-4613-01 11 92532543 92532543 G C FAT3 Missense_Mutation p.V2122L 0.10 benign(0.002) TCGA-22-4613-01 11 93065417 93065417 T A CCDC67 5'UTR 0.41 TCGA-22-4613-01 11 94231407 94231407 G C ANKRD49 Silent p.T143T 0.09 TCGA-22-4613-01 11 94231411 94231411 C T ANKRD49 Silent p.L145L 0.08 TCGA-22-4613-01 12 100377981 100377981 C A ANKS1B Missense_Mutation p.R12L 0.30 deleterious(0) benign(0.122) TCGA-22-4613-01 12 100774486 100774486 G T SLC17A8 Missense_Mutation p.D37Y 0.24 deleterious(0.01) probably_damaging(1) TCGA-22-4613-01 12 100797919 100797919 C T SLC17A8 Missense_Mutation p.T386I 0.22 deleterious(0) probably_damaging(1) TCGA-22-4613-01 12 104476606 104476606 G T HCFC2 Missense_Mutation p.W330C 0.32 deleterious(0) probably_damaging(0.999) TCGA-22-4613-01 12 108169133 108169133 C A ASCL4 Nonsense_Mutation p.C47* 0.29 TCGA-22-4613-01 12 113546027 113546027 C G RASAL1 Missense_Mutation p.D460H 0.13 deleterious(0) probably_damaging(0.934) TCGA-22-4613-01 12 113557020 113557020 C A RASAL1 Missense_Mutation p.E185D 0.28 deleterious(0.04) benign(0.337) TCGA-22-4613-01 12 114839642 114839642 G - TBX5 Frame_Shift_Del p.K78Rfs*12 0.23 TCGA-22-4613-01 12 129563197 129563197 G A TMEM132D Missense_Mutation p.T666I 0.26 deleterious(0) benign(0.095) TCGA-22-4613-01 12 13716820 13716820 C A GRIN2B Missense_Mutation p.D1118Y 0.31 deleterious(0.04) benign(0.412) TCGA-22-4613-01 12 13906657 13906657 C G GRIN2B Missense_Mutation p.V202L 0.35 deleterious(0) possibly_damaging(0.594) TCGA-22-4613-01 12 1702723 1702723 G T FBXL14 Silent p.R170R 0.29 TCGA-22-4613-01 12 1992086 1992086 C G CACNA2D4 Missense_Mutation p.V478L 0.31 deleterious(0) benign(0.387) TCGA-22-4613-01 12 21229443 21229443 G A SLCO1B7 Nonsense_Mutation p.W555* 0.32 TCGA-22-4613-01 12 21450348 21450348 G T SLCO1A2 Silent p.I355I 0.32 TCGA-22-4613-01 12 21526284 21526284 C A IAPP 5'UTR 0.17 TCGA-22-4613-01 12 21526285 21526285 A C IAPP 5'UTR 0.17 TCGA-22-4613-01 12 2788654 2788654 C A CACNA1C Missense_Mutation p.S1760R 0.44 tolerated(0.42) benign(0.25) TCGA-22-4613-01 12 33538175 33538175 C A SYT10 Missense_Mutation p.A377S 0.23 deleterious(0.02) probably_damaging(0.98) TCGA-22-4613-01 12 41966841 41966841 C G PDZRN4 Missense_Mutation p.R754G 0.32 tolerated(0.33) possibly_damaging(0.796) TCGA-22-4613-01 12 42554479 42554479 C A YAF2 Missense_Mutation p.G176V 0.22 deleterious(0) possibly_damaging(0.73) TCGA-22-4613-01 12 4479738 4479738 C T FGF23 Missense_Mutation p.R176Q 0.12 tolerated(0.06) probably_damaging(0.998) TCGA-22-4613-01 12 45567135 45567135 C A PLEKHA8P1 RNA 0.28 TCGA-22-4613-01 12 45771835 45771835 G C ANO6 Splice_Site p.X390_splice 0.30 TCGA-22-4613-01 12 49937247 49937247 G T KCNH3 Missense_Mutation p.A257S 0.34 tolerated(0.33) benign(0.018) TCGA-22-4613-01 12 51748185 51748185 T G GALNT6 Missense_Mutation p.H616P 0.26 deleterious(0.04) possibly_damaging(0.567) TCGA-22-4613-01 12 52761150 52761150 C T KRT85 Missense_Mutation p.V14I 0.31 tolerated(0.15) benign(0.003) TCGA-22-4613-01 12 55420434 55420434 G T NEUROD4 Missense_Mutation p.G71C 0.35 deleterious(0) probably_damaging(1) TCGA-22-4613-01 12 56716415 56716415 T A PAN2 Missense_Mutation p.Y878F 0.29 deleterious(0) probably_damaging(0.999) TCGA-22-4613-01 12 64491063 64491063 A G SRGAP1 Missense_Mutation p.N574S 0.41 deleterious(0) possibly_damaging(0.794) TCGA-22-4613-01 12 7032053 7032053 C G ENO2 3'UTR 0.13 TCGA-22-4613-01 12 70925933 70925933 G T PTPRB Missense_Mutation p.T2129N 0.35 deleterious(0) probably_damaging(0.997) TCGA-22-4613-01 12 7355220 7355220 G A PEX5 Missense_Mutation p.A271T 0.34 tolerated(0.22) possibly_damaging(0.715) TCGA-22-4613-01 12 7548873 7548873 T C CD163L1 Missense_Mutation p.Q623R 0.25 deleterious(0) probably_damaging(0.988) TCGA-22-4613-01 12 7843099 7843099 C A GDF3 Missense_Mutation p.G157V 0.28 deleterious(0.01) benign(0.107) TCGA-22-4613-01 12 78569142 78569142 A T NAV3 Missense_Mutation p.T1680S 0.27 deleterious(0.05) possibly_damaging(0.644) TCGA-22-4613-01 12 85459184 85459184 G A LRRIQ1 Missense_Mutation p.D846N 0.29 tolerated(0.31) probably_damaging(1) TCGA-22-4613-01 12 85515541 85515541 A T LRRIQ1 Silent p.S1148S 0.28 TCGA-22-4613-01 12 85674243 85674243 C A ALX1 Silent p.T68T 0.45 TCGA-22-4613-01 12 99042501 99042501 G T APAF1 Missense_Mutation p.G79V 0.23 deleterious(0.04) possibly_damaging(0.837) TCGA-22-4613-01 13 100637597 100637597 G A ZIC2 Silent p.Q420Q 0.24 TCGA-22-4613-01 13 101833559 101833559 G T NALCN Intron 0.16 TCGA-22-4613-01 13 108518074 108518074 G T FAM155A Missense_Mutation p.Q291K 0.15 deleterious(0.01) possibly_damaging(0.725) TCGA-22-4613-01 13 110815819 110815819 C A COL4A1 Missense_Mutation p.G1414W 0.12 unknown(0) TCGA-22-4613-01 13 111117775 111117775 A G COL4A2 Silent p.P600P 0.38 TCGA-22-4613-01 13 114287509 114287509 A C TFDP1 Missense_Mutation p.Q128P 0.14 deleterious(0) probably_damaging(0.962) TCGA-22-4613-01 13 19751540 19751540 G T TUBA3C Missense_Mutation p.L195M 0.40 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-22-4613-01 13 23929996 23929996 C A SACS Missense_Mutation p.G252V 0.30 probably_damaging(1) TCGA-22-4613-01 13 24304513 24304513 C T MIPEP Missense_Mutation p.E706K 0.33 deleterious(0.01) possibly_damaging(0.651) TCGA-22-4613-01 13 25264605 25264605 T G ATP12A Missense_Mutation p.C226G 0.45 deleterious(0) probably_damaging(0.989) TCGA-22-4613-01 13 25284659 25284659 T C ATP12A Missense_Mutation p.L948P 0.39 deleterious(0) benign(0.377) TCGA-22-4613-01 13 32365979 32365979 C A RXFP2 Silent p.P394P 0.21 TCGA-22-4613-01 13 32752551 32752551 G T FRY Missense_Mutation p.V887L 0.23 tolerated(1) benign(0) TCGA-22-4613-01 13 32798403 32798403 G C FRY Missense_Mutation p.L1599F 0.43 tolerated(0.53) benign(0.14) TCGA-22-4613-01 13 32813445 32813445 C A FRY Missense_Mutation p.P2159T 0.21 deleterious(0) probably_damaging(1) TCGA-22-4613-01 13 32912926 32912926 A G BRCA2 Silent p.L1478L 0.47 TCGA-22-4613-01 13 35770090 35770090 A G NBEA Missense_Mutation p.T1673A 0.32 tolerated_low_confidence(0.47) benign(0.016) TCGA-22-4613-01 13 39603500 39603500 C G PROSER1 Missense_Mutation p.V65L 0.12 deleterious(0.05) possibly_damaging(0.493) TCGA-22-4613-01 13 52657401 52657401 C A NEK5 Missense_Mutation p.V523L 0.12 tolerated(0.33) benign(0.047) TCGA-22-4613-01 13 53603017 53603017 G T OLFM4 Missense_Mutation p.G16C 0.33 deleterious_low_confidence(0.01) unknown(0) TCGA-22-4613-01 13 67477735 67477735 A G PCDH9 Silent p.C1013C 0.53 TCGA-22-4613-01 14 100828124 100828124 T C WARS Silent p.T78T 0.24 TCGA-22-4613-01 14 101521021 101521021 G A MIR134 RNA 0.33 TCGA-22-4613-01 14 102606455 102606455 C A WDR20 Silent p.L65L 0.22 TCGA-22-4613-01 14 105201411 105201411 C T ADSSL1 Missense_Mutation p.H126Y 0.32 deleterious(0) probably_damaging(0.992) TCGA-22-4613-01 14 106610580 106610580 C A IGHV3-15 Missense_Mutation p.L30F 0.30 deleterious_low_confidence(0.01) probably_damaging(0.914) TCGA-22-4613-01 14 106692152 106692152 C A IGHV3-21 5'UTR 0.34 TCGA-22-4613-01 14 107083245 107083245 C A IGHV4-59 Missense_Mutation p.R120M 0.20 deleterious_low_confidence(0.04) benign(0.05) TCGA-22-4613-01 14 20444091 20444091 C T OR4K15 Silent p.L138L 0.25 TCGA-22-4613-01 14 20770004 20770004 C G TTC5 Missense_Mutation p.E58Q 0.19 tolerated(0.22) benign(0.003) TCGA-22-4613-01 14 22038500 22038500 C T OR10G3 Missense_Mutation p.A126T 0.17 deleterious(0) probably_damaging(0.999) TCGA-22-4613-01 14 24108548 24108548 G A DHRS2 Missense_Mutation p.E101K 0.43 tolerated(0.56) benign(0.021) TCGA-22-4613-01 14 24113371 24113371 G T DHRS2 Silent p.V180V 0.31 TCGA-22-4613-01 14 24886547 24886547 G T NYNRIN Missense_Mutation p.W1864C 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-22-4613-01 14 26917820 26917820 C A NOVA1 Missense_Mutation p.G290V 0.16 deleterious(0.04) unknown(0) TCGA-22-4613-01 14 38724223 38724223 T G CLEC14A Missense_Mutation p.E335D 0.17 tolerated(0.26) benign(0.142) TCGA-22-4613-01 14 39650827 39650827 G T PNN Silent p.R638R 0.25 TCGA-22-4613-01 14 56146364 56146364 C A KTN1 Missense_Mutation p.Q1344K 0.31 tolerated(0.16) possibly_damaging(0.66) TCGA-22-4613-01 14 58701178 58701178 G A ACTR10 Missense_Mutation p.C388Y 0.19 deleterious(0) probably_damaging(0.995) TCGA-22-4613-01 14 61113136 61113136 G A SIX1 Silent p.H240H 0.34 TCGA-22-4613-01 14 63779814 63779814 G C GPHB5 RNA 0.46 TCGA-22-4613-01 14 65008114 65008114 G T HSPA2 Missense_Mutation p.A183S 0.31 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-22-4613-01 14 65246617 65246617 C T SPTB Silent p.E1433E 0.21 TCGA-22-4613-01 14 65253222 65253222 C T SPTB Missense_Mutation p.G1154D 0.16 tolerated(0.22) benign(0.159) TCGA-22-4613-01 14 68191292 68191292 A C RDH12 Missense_Mutation p.R57S 0.20 tolerated(0.27) possibly_damaging(0.527) TCGA-22-4613-01 14 68241800 68241800 G C ZFYVE26 Missense_Mutation p.H1751Q 0.19 tolerated(0.29) benign(0.037) TCGA-22-4613-01 14 70522529 70522529 C A SLC8A3 Silent p.A630A 0.26 TCGA-22-4613-01 14 71493521 71493521 A T PCNX Missense_Mutation p.I1130F 0.26 tolerated(0.28) benign(0.017) TCGA-22-4613-01 14 73491086 73491086 C A ZFYVE1 Missense_Mutation p.R44L 0.26 deleterious(0.04) benign(0.198) TCGA-22-4613-01 14 91691191 91691191 G T C14orf159 3'UTR 0.20 TCGA-22-4613-01 14 93684957 93684957 G T UBR7 Missense_Mutation p.G229V 0.32 tolerated(0.05) possibly_damaging(0.548) TCGA-22-4613-01 14 95030431 95030431 C T SERPINA4 Silent p.D204D 0.29 TCGA-22-4613-01 14 96706660 96706660 C T BDKRB2 Intron 0.27 TCGA-22-4613-01 14 99642498 99642498 T C BCL11B Silent p.T225T 0.32 TCGA-22-4613-01 15 102346675 102346675 T A OR4F6 Missense_Mutation p.F251L 0.20 deleterious_low_confidence(0.01) probably_damaging(0.954) TCGA-22-4613-01 15 22383085 22383085 C A OR4N4 Missense_Mutation p.L205M 0.06 tolerated(0.24) probably_damaging(1) TCGA-22-4613-01 15 22709213 22709213 C T AC116165.1 5'Flank 0.45 TCGA-22-4613-01 15 23261331 23261331 C A GOLGA8I Missense_Mutation p.Q271K 0.61 tolerated(1) benign(0.001) TCGA-22-4613-01 15 24921812 24921812 C T NPAP1 Silent p.A266A 0.23 TCGA-22-4613-01 15 25322271 25322271 C A SNORD116-12 RNA 0.27 TCGA-22-4613-01 15 25486950 25486950 G T SNORD115-39 RNA 0.29 TCGA-22-4613-01 15 33180426 33180426 A C FMN1 Missense_Mutation p.V1038G 0.41 deleterious(0) probably_damaging(1) TCGA-22-4613-01 15 34047380 34047380 A T RYR3 Missense_Mutation p.L2838F 0.43 benign(0.411) TCGA-22-4613-01 15 38235579 38235579 C G TMCO5A Missense_Mutation p.H203D 0.29 tolerated(0.32) benign(0.069) TCGA-22-4613-01 15 41821753 41821753 C A RPAP1 Missense_Mutation p.R358L 0.34 deleterious(0) probably_damaging(1) TCGA-22-4613-01 15 42379558 42379558 G A PLA2G4D Silent p.T65T 0.29 TCGA-22-4613-01 15 49048574 49048574 C G CEP152 Silent p.R957R 0.23 TCGA-22-4613-01 15 51514634 51514634 A T CYP19A1 Missense_Mutation p.N180K 0.26 tolerated(0.07) possibly_damaging(0.479) TCGA-22-4613-01 15 51755631 51755631 A G DMXL2 Missense_Mutation p.V2624A 0.29 tolerated(0.78) benign(0.253) TCGA-22-4613-01 15 52720734 52720734 C T MYO5A Silent p.K57K 0.29 TCGA-22-4613-01 15 53907719 53907719 A - WDR72 Frame_Shift_Del p.L895Cfs*7 0.28 TCGA-22-4613-01 15 62221838 62221838 C A VPS13C Missense_Mutation p.V2050L 0.28 tolerated(1) benign(0.003) TCGA-22-4613-01 15 65678235 65678235 G T IGDCC4 Missense_Mutation p.D1038E 0.17 tolerated(0.81) benign(0.003) TCGA-22-4613-01 15 66844498 66844498 C T LCTL Missense_Mutation p.G403S 0.26 deleterious(0.04) probably_damaging(0.987) TCGA-22-4613-01 15 68122622 68122622 C A SKOR1 Missense_Mutation p.A737E 0.36 tolerated_low_confidence(0.11) benign(0.163) TCGA-22-4613-01 15 75014673 75014673 C A CYP1A1 Nonsense_Mutation p.E256* 0.35 TCGA-22-4613-01 15 76696902 76696902 G T SCAPER Missense_Mutation p.H1144N 0.20 tolerated(0.48) benign(0.007) TCGA-22-4613-01 15 81212548 81212548 C A KIAA1199 Silent p.T637T 0.22 TCGA-22-4613-01 15 84592672 84592672 A T ADAMTSL3 Silent p.I668I 0.29 TCGA-22-4613-01 15 94899250 94899250 G T MCTP2 Intron 0.56 TCGA-22-4613-01 16 1262139 1262139 G A CACNA1H Splice_Site p.X1587_splice 0.40 TCGA-22-4613-01 16 20331649 20331649 C G GP2 Missense_Mutation p.E268Q 0.10 tolerated(0.39) benign(0.014) TCGA-22-4613-01 16 20441012 20441012 G C ACSM5 Missense_Mutation p.Q338H 0.35 deleterious(0.03) benign(0.005) TCGA-22-4613-01 16 20494478 20494478 C G ACSM2A Silent p.A536A 0.05 TCGA-22-4613-01 16 23079310 23079310 C A USP31 3'UTR 0.16 TCGA-22-4613-01 16 2369699 2369699 T C ABCA3 Silent p.A252A 0.12 TCGA-22-4613-01 16 31332938 31332938 G T ITGAM Silent p.R665R 0.31 TCGA-22-4613-01 16 31429860 31429860 T C ITGAD Missense_Mutation p.Y919H 0.32 deleterious(0) probably_damaging(0.942) TCGA-22-4613-01 16 46952628 46952628 G C GPT2 Missense_Mutation p.E332D 0.16 deleterious(0) probably_damaging(0.988) TCGA-22-4613-01 16 49671670 49671670 T C ZNF423 Missense_Mutation p.K465E 0.35 tolerated(0.88) benign(0.001) TCGA-22-4613-01 16 50759418 50759418 C A NOD2 Silent p.L967L 0.22 TCGA-22-4613-01 16 50759419 50759419 C T NOD2 Nonsense_Mutation p.Q968* 0.23 TCGA-22-4613-01 16 51175285 51175285 G T SALL1 Missense_Mutation p.S283Y 0.36 deleterious(0.05) possibly_damaging(0.534) TCGA-22-4613-01 16 55880745 55880745 G A CES5A Silent p.A506A 0.25 TCGA-22-4613-01 16 56913034 56913034 C T SLC12A3 Silent p.T410T 0.43 TCGA-22-4613-01 16 70404234 70404234 C T DDX19A Missense_Mutation p.R377C 0.23 deleterious(0.01) probably_damaging(0.992) TCGA-22-4613-01 16 76486590 76486590 C G CNTNAP4 Missense_Mutation p.I346M 0.30 deleterious(0.01) benign(0.094) TCGA-22-4613-01 16 76587757 76587757 G T RP11-58C22.1 Missense_Mutation p.R37I 0.23 deleterious(0.05) benign(0.005) TCGA-22-4613-01 16 84270616 84270616 C T KCNG4 Missense_Mutation p.R159K 0.23 tolerated(0.97) benign(0.003) TCGA-22-4613-01 16 8870208 8870208 G T ABAT Missense_Mutation p.R377L 0.27 deleterious(0) probably_damaging(0.997) TCGA-22-4613-01 16 9862871 9862871 T A GRIN2A Missense_Mutation p.Q811L 0.33 deleterious(0) probably_damaging(0.999) TCGA-22-4613-01 17 10356534 10356534 T C MYH4 Missense_Mutation p.M1016V 0.21 tolerated(0.08) benign(0) TCGA-22-4613-01 17 12044607 12044607 A T MAP2K4 3'UTR 0.45 TCGA-22-4613-01 17 16593972 16593972 A G CCDC144A Silent p.R86R 0.19 TCGA-22-4613-01 17 26883210 26883210 C T PIGS Silent p.V385V 0.57 TCGA-22-4613-01 17 29556345 29556345 T A NF1 Nonsense_Mutation p.C904* 0.60 TCGA-22-4613-01 17 3119289 3119289 C A OR1A1 Silent p.A125A 0.44 TCGA-22-4613-01 17 32955603 32955603 G C TMEM132E Silent p.V250V 0.39 TCGA-22-4613-01 17 34106035 34106035 T A MMP28 Missense_Mutation p.D79V 0.21 deleterious(0) probably_damaging(1) TCGA-22-4613-01 17 34233800 34233800 T C AC015849.16 RNA 0.42 TCGA-22-4613-01 17 34499221 34499221 C A TBC1D3B Nonsense_Mutation p.G164* 0.11 TCGA-22-4613-01 17 34641583 34641583 G C CCL4L2 3'UTR 0.49 TCGA-22-4613-01 17 35311101 35311101 C T AATF Silent p.I242I 0.10 TCGA-22-4613-01 17 38347644 38347644 G A RAPGEFL1 Missense_Mutation p.R265H 0.16 deleterious(0) possibly_damaging(0.781) TCGA-22-4613-01 17 39316871 39316871 A T KRTAP4-4 Missense_Mutation p.Y25N 0.19 unknown(0) TCGA-22-4613-01 17 40447725 40447725 C T STAT5A Missense_Mutation p.T155M 0.14 deleterious(0) probably_damaging(0.999) TCGA-22-4613-01 17 41004870 41004870 A T AOC3 Missense_Mutation p.T504S 0.67 tolerated(0.21) benign(0.001) TCGA-22-4613-01 17 41219706 41219706 C A BRCA1 Missense_Mutation p.V1686L 0.57 deleterious(0) benign(0) TCGA-22-4613-01 17 41891578 41891578 C A MPP3 Silent p.L387L 0.62 TCGA-22-4613-01 17 42855529 42855529 G C ADAM11 Missense_Mutation p.G732A 0.21 tolerated(0.44) possibly_damaging(0.562) TCGA-22-4613-01 17 48917193 48917193 C A WFIKKN2 Missense_Mutation p.P182T 0.46 tolerated(0.07) possibly_damaging(0.874) TCGA-22-4613-01 17 56276546 56276546 G T EPX Missense_Mutation p.M422I 0.15 tolerated(0.31) benign(0) TCGA-22-4613-01 17 62533868 62533868 T G CEP95 Missense_Mutation p.F813V 0.19 deleterious(0) possibly_damaging(0.86) TCGA-22-4613-01 17 65889725 65889725 G T BPTF Missense_Mutation p.W765C 0.24 probably_damaging(1) TCGA-22-4613-01 17 65925453 65925453 C T BPTF Silent p.G2000G 0.50 TCGA-22-4613-01 17 67081191 67081191 C G ABCA6 Missense_Mutation p.D1388H 0.48 deleterious(0.03) probably_damaging(0.954) TCGA-22-4613-01 17 7365586 7365586 G T ZBTB4 Missense_Mutation p.D905E 0.22 benign(0.145) TCGA-22-4613-01 17 73702537 73702537 C T SAP30BP Missense_Mutation p.A288V 0.44 tolerated(0.24) probably_damaging(0.997) TCGA-22-4613-01 17 73747075 73747075 C T ITGB4 Silent p.L1226L 0.20 TCGA-22-4613-01 17 74944914 74944914 T C MGAT5B Silent p.C800C 0.18 TCGA-22-4613-01 17 7577574 7577574 T C TP53 Missense_Mutation p.Y236C 0.43 deleterious(0) probably_damaging(0.996) TCGA-22-4613-01 17 76100563 76100563 C A TNRC6C Intron 0.57 TCGA-22-4613-01 17 9763275 9763275 G C GLP2R Missense_Mutation p.R261P 0.34 deleterious(0) probably_damaging(0.999) TCGA-22-4613-01 18 13759960 13759960 C G RNMT Silent p.A471A 0.44 TCGA-22-4613-01 18 14534910 14534910 T C POTEC Missense_Mutation p.R303G 0.12 tolerated(0.09) probably_damaging(0.966) TCGA-22-4613-01 18 18571141 18571141 C T ROCK1 Missense_Mutation p.M713I 0.58 tolerated(0.15) benign(0.022) TCGA-22-4613-01 18 19424132 19424132 A T MIB1 Missense_Mutation p.H710L 0.16 tolerated(0.13) benign(0.026) TCGA-22-4613-01 18 19780824 19780824 G T GATA6 3'UTR 0.20 TCGA-22-4613-01 18 20606289 20606289 T G RBBP8 3'UTR 0.16 TCGA-22-4613-01 18 28966736 28966736 C A DSG4 Missense_Mutation p.A57D 0.13 tolerated(0.24) possibly_damaging(0.894) TCGA-22-4613-01 18 30926304 30926304 G C CCDC178 Missense_Mutation p.L177V 0.06 deleterious(0) probably_damaging(1) TCGA-22-4613-01 18 74592249 74592249 G T ZNF236 Missense_Mutation p.G387C 0.39 deleterious(0) probably_damaging(0.99) TCGA-22-4613-01 18 9208692 9208692 A T ANKRD12 Missense_Mutation p.E114D 0.52 tolerated(0.18) benign(0.02) TCGA-22-4613-01 19 1004702 1004702 C - GRIN3B Frame_Shift_Del p.S402Lfs*19 0.41 TCGA-22-4613-01 19 1269900 1269900 G A CIRBP Intron 0.41 TCGA-22-4613-01 19 12800594 12800594 C A FBXW9 Missense_Mutation p.G376V 0.26 deleterious(0) probably_damaging(0.915) TCGA-22-4613-01 19 12800595 12800595 C A FBXW9 Missense_Mutation p.G376C 0.26 deleterious(0) probably_damaging(0.991) TCGA-22-4613-01 19 14023230 14023230 G C CC2D1A Missense_Mutation p.L97F 0.31 tolerated(0.2) benign(0.342) TCGA-22-4613-01 19 15726522 15726522 C T AD000091.2 5'Flank 0.35 TCGA-22-4613-01 19 1612236 1612236 C A TCF3 Intron 0.36 TCGA-22-4613-01 19 17355849 17355849 C G NR2F6 Missense_Mutation p.D61H 0.20 deleterious(0) probably_damaging(1) TCGA-22-4613-01 19 17396327 17396327 C A ANKLE1 Silent p.G488G 0.18 TCGA-22-4613-01 19 17756582 17756582 C A UNC13A Missense_Mutation p.V753L 0.33 tolerated(0.3) possibly_damaging(0.611) TCGA-22-4613-01 19 18545674 18545674 C G ISYNA1 3'UTR 0.20 TCGA-22-4613-01 19 18989838 18989838 G T CERS1 Missense_Mutation p.A304E 0.48 tolerated(0.28) benign(0.258) TCGA-22-4613-01 19 19369365 19369365 A G HAPLN4 Missense_Mutation p.Y262H 0.32 deleterious(0) probably_damaging(0.94) TCGA-22-4613-01 19 30935560 30935560 T A ZNF536 Missense_Mutation p.M364K 0.29 deleterious(0) probably_damaging(0.99) TCGA-22-4613-01 19 35530610 35530610 G T HPN 5'Flank 0.19 TCGA-22-4613-01 19 37879573 37879573 G T ZNF527 Nonsense_Mutation p.E208* 0.12 TCGA-22-4613-01 19 3823291 3823291 C G ZFR2 Missense_Mutation p.A442P 0.04 tolerated(0.09) benign(0.017) TCGA-22-4613-01 19 40729394 40729394 G C CNTD2 Silent p.A191A 0.18 TCGA-22-4613-01 19 41231345 41231345 G T ITPKC Splice_Site p.X419_splice 0.41 TCGA-22-4613-01 19 44832207 44832207 G T ZNF112 Nonsense_Mutation p.Y707* 0.13 TCGA-22-4613-01 19 45422573 45422573 C T APOC1 3'UTR 0.18 TCGA-22-4613-01 19 45593723 45593723 G T GEMIN7 Silent p.A117A 0.29 TCGA-22-4613-01 19 46307718 46307718 C G RSPH6A Missense_Mutation p.R482P 0.31 deleterious(0) probably_damaging(1) TCGA-22-4613-01 19 47285696 47285696 G T SLC1A5 Silent p.I256I 0.34 TCGA-22-4613-01 19 51381943 51381943 T A KLK2 3'UTR 0.47 TCGA-22-4613-01 19 53058070 53058070 G T ZNF808 Missense_Mutation p.W634L 0.29 tolerated(0.67) possibly_damaging(0.637) TCGA-22-4613-01 19 53058071 53058071 G T ZNF808 Missense_Mutation p.W634C 0.31 tolerated(0.18) probably_damaging(0.926) TCGA-22-4613-01 19 53612393 53612393 C A ZNF415 Missense_Mutation p.C302F 0.10 deleterious(0) probably_damaging(0.996) TCGA-22-4613-01 19 53995112 53995112 T G ZNF813 Missense_Mutation p.H542Q 0.09 tolerated(1) benign(0.021) TCGA-22-4613-01 19 54080374 54080374 A G ZNF331 Missense_Mutation p.Y187C 0.34 deleterious(0) probably_damaging(0.998) TCGA-22-4613-01 19 54720984 54720984 T C LILRB3 Missense_Mutation p.Y626C 0.13 deleterious(0) probably_damaging(0.964) TCGA-22-4613-01 19 54760404 54760404 C A LILRB5 Missense_Mutation p.E101D 0.38 tolerated(0.15) benign(0.042) TCGA-22-4613-01 19 55085768 55085768 G T LILRA2 Missense_Mutation p.G24V 0.12 deleterious(0) probably_damaging(0.946) TCGA-22-4613-01 19 55086322 55086322 A G LILRA2 Silent p.E159E 0.33 TCGA-22-4613-01 19 55220501 55220501 G C AC098784.2 3'Flank 0.43 TCGA-22-4613-01 19 57089731 57089731 G C ZNF470 Missense_Mutation p.G645A 0.47 deleterious(0) probably_damaging(0.998) TCGA-22-4613-01 19 58967702 58967702 A G ZNF324B Missense_Mutation p.K464R 0.14 tolerated(0.24) probably_damaging(1) TCGA-22-4613-01 19 8550724 8550724 G C HNRNPM Missense_Mutation p.R471P 0.22 deleterious(0.01) possibly_damaging(0.525) TCGA-22-4613-01 19 9058345 9058345 C A MUC16 Nonsense_Mutation p.E9701* 0.17 TCGA-22-4613-01 19 9362505 9362505 C A OR7E24 Missense_Mutation p.H262Q 0.28 deleterious(0.01) possibly_damaging(0.777) TCGA-22-4613-01 1 101196814 101196814 C A VCAM1 Missense_Mutation p.T422N 0.30 deleterious(0.02) benign(0.22) TCGA-22-4613-01 1 104112971 104112971 G T AMY2B Intron 0.17 TCGA-22-4613-01 1 108679227 108679227 G A SLC25A24 3'UTR 0.31 TCGA-22-4613-01 1 109814989 109814989 G - CELSR2 Frame_Shift_Del p.G2673Afs*12 0.26 TCGA-22-4613-01 1 110594511 110594511 T A STRIP1 Splice_Site p.X756_splice 0.32 TCGA-22-4613-01 1 118548128 118548128 T C SPAG17 Missense_Mutation p.K1562R 0.21 tolerated(0.11) probably_damaging(0.921) TCGA-22-4613-01 1 118554860 118554860 G A SPAG17 Nonsense_Mutation p.Q1475* 0.27 TCGA-22-4613-01 1 13001287 13001287 T A PRAMEF6 Missense_Mutation p.K132N 0.03 tolerated(0.48) benign(0.286) TCGA-22-4613-01 1 144879133 144879133 C G PDE4DIP Missense_Mutation p.E1439D 0.18 tolerated(0.1) benign(0.045) TCGA-22-4613-01 1 145535884 145535884 G A ITGA10 Missense_Mutation p.R691H 0.26 tolerated(0.55) benign(0.005) TCGA-22-4613-01 1 147380454 147380454 G T GJA8 Silent p.P124P 0.33 TCGA-22-4613-01 1 149754251 149754251 A G FCGR1A 5'UTR 0.32 TCGA-22-4613-01 1 153659831 153659831 C A NPR1 Silent p.A697A 0.35 TCGA-22-4613-01 1 156047322 156047322 C A MEX3A Missense_Mutation p.M202I 0.18 tolerated(0.06) benign(0.432) TCGA-22-4613-01 1 157667699 157667699 G T FCRL3 Silent p.I103I 0.42 TCGA-22-4613-01 1 158576965 158576965 C G OR10Z1 Missense_Mutation p.T246R 0.29 deleterious(0) possibly_damaging(0.762) TCGA-22-4613-01 1 158670043 158670043 T C OR6K2 Missense_Mutation p.I134V 0.34 tolerated(0.17) benign(0.057) TCGA-22-4613-01 1 159284278 159284278 T A OR10J3 Missense_Mutation p.T58S 0.30 deleterious(0) possibly_damaging(0.792) TCGA-22-4613-01 1 161560953 161560953 C G FCGR2C 5'Flank 0.21 TCGA-22-4613-01 1 162824606 162824606 C A C1orf110 Missense_Mutation p.R286S 0.35 tolerated(0.05) benign(0) TCGA-22-4613-01 1 166839015 166839015 G A TADA1 Missense_Mutation p.L51F 0.28 deleterious(0.01) probably_damaging(0.956) TCGA-22-4613-01 1 166987183 166987183 C A MAEL Missense_Mutation p.A343E 0.25 deleterious(0.01) probably_damaging(0.962) TCGA-22-4613-01 1 169510187 169510187 G T F5 Missense_Mutation p.Q1381K 0.39 tolerated_low_confidence(0.06) benign(0.01) TCGA-22-4613-01 1 175092777 175092777 G T TNN Missense_Mutation p.K964N 0.30 deleterious(0.02) possibly_damaging(0.881) TCGA-22-4613-01 1 175355202 175355202 G T TNR Missense_Mutation p.N581K 0.26 tolerated(0.94) possibly_damaging(0.837) TCGA-22-4613-01 1 177250056 177250056 C T BRINP2 Silent p.L582L 0.26 TCGA-22-4613-01 1 177913756 177913756 C A SEC16B Silent p.T607T 0.26 TCGA-22-4613-01 1 178745918 178745918 C A RALGPS2 Missense_Mutation p.Q7K 0.26 tolerated_low_confidence(1) benign(0.206) TCGA-22-4613-01 1 179989082 179989082 A G CEP350 Splice_Site p.X725_splice 0.27 TCGA-22-4613-01 1 183253106 183253106 C G NMNAT2 Intron 0.24 TCGA-22-4613-01 1 186331476 186331476 T A TPR Missense_Mutation p.T245S 0.36 benign(0.292) TCGA-22-4613-01 1 190250791 190250791 C T BRINP3 Missense_Mutation p.R109H 0.30 tolerated(0.18) probably_damaging(0.998) TCGA-22-4613-01 1 196887531 196887531 G T CFHR4 Nonsense_Mutation p.E577* 0.23 TCGA-22-4613-01 1 196946815 196946815 A T CFHR5 Silent p.V7V 0.31 TCGA-22-4613-01 1 197072093 197072093 T A ASPM Silent p.T2096T 0.28 TCGA-22-4613-01 1 197390630 197390630 A T CRB1 Missense_Mutation p.I558F 0.28 deleterious(0.01) benign(0.169) TCGA-22-4613-01 1 200613312 200613312 C T DDX59 3'UTR 0.33 TCGA-22-4613-01 1 205031444 205031444 C T CNTN2 Intron 0.30 TCGA-22-4613-01 1 211836894 211836894 G C NEK2 Silent p.L404L 0.28 TCGA-22-4613-01 1 213173694 213173694 T C ANGEL2 Silent p.Q431Q 0.28 TCGA-22-4613-01 1 216166490 216166490 C A USH2A Missense_Mutation p.C2226F 0.22 probably_damaging(1) TCGA-22-4613-01 1 220253147 220253147 G A BPNT1 Silent p.S14S 0.32 TCGA-22-4613-01 1 220310241 220310241 T C IARS2 Silent p.V679V 0.29 TCGA-22-4613-01 1 220440659 220440659 G A RAB3GAP2 Intron 0.29 TCGA-22-4613-01 1 223179195 223179195 A T DISP1 Missense_Mutation p.I1486F 0.36 tolerated_low_confidence(0.09) benign(0.044) TCGA-22-4613-01 1 225599054 225599054 G A LBR Silent p.P391P 0.34 TCGA-22-4613-01 1 22973781 22973781 C A C1QC Silent p.P81P 0.24 TCGA-22-4613-01 1 231406507 231406507 A C GNPAT Missense_Mutation p.N428T 0.30 tolerated(0.1) benign(0.24) TCGA-22-4613-01 1 233394065 233394065 C A PCNXL2 Missense_Mutation p.D515Y 0.24 deleterious(0) probably_damaging(0.971) TCGA-22-4613-01 1 236306297 236306297 G T GPR137B Missense_Mutation p.Q125H 0.29 deleterious(0) benign(0.206) TCGA-22-4613-01 1 237016389 237016389 G A MTR Splice_Site p.X651_splice 0.30 TCGA-22-4613-01 1 237754047 237754047 C A RYR2 Missense_Mutation p.S1305R 0.34 benign(0.244) TCGA-22-4613-01 1 237951425 237951425 A T RYR2 Missense_Mutation p.Q4489L 0.31 benign(0.02) TCGA-22-4613-01 1 240370980 240370980 G T FMN2 Silent p.P956P 0.35 TCGA-22-4613-01 1 240656540 240656540 C G GREM2 Missense_Mutation p.R79P 0.20 deleterious(0.04) probably_damaging(0.974) TCGA-22-4613-01 1 242383325 242383325 C A PLD5 Missense_Mutation p.G234C 0.21 deleterious(0) probably_damaging(0.998) TCGA-22-4613-01 1 242383334 242383334 C A PLD5 Missense_Mutation p.V231L 0.29 tolerated(0.26) benign(0.004) TCGA-22-4613-01 1 247920944 247920944 G T OR1C1 Silent p.A255A 0.35 TCGA-22-4613-01 1 248525483 248525483 C A OR2T4 Missense_Mutation p.R201S 0.25 deleterious(0) benign(0.001) TCGA-22-4613-01 1 248551514 248551514 G A OR2T6 Missense_Mutation p.C202Y 0.24 deleterious(0.01) probably_damaging(1) TCGA-22-4613-01 1 26104631 26104631 G A MAN1C1 Silent p.G431G 0.37 TCGA-22-4613-01 1 32542890 32542890 C T TMEM39B Silent p.S187S 0.24 TCGA-22-4613-01 1 43775130 43775130 C G TIE1 Missense_Mutation p.D420E 0.38 deleterious(0.03) probably_damaging(0.997) TCGA-22-4613-01 1 44685876 44685876 C G DMAP1 Silent p.G413G 0.25 TCGA-22-4613-01 1 46088752 46088752 C A CCDC17 Silent p.R177R 0.37 TCGA-22-4613-01 1 67236120 67236120 T C TCTEX1D1 Missense_Mutation p.I57T 0.21 tolerated(0.4) benign(0.001) TCGA-22-4613-01 1 75684328 75684328 T C SLC44A5 Missense_Mutation p.Y459C 0.30 tolerated(0.15) benign(0.02) TCGA-22-4613-01 1 78163019 78163019 C T USP33 Missense_Mutation p.E938K 0.23 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-22-4613-01 1 86306919 86306919 G C COL24A1 Missense_Mutation p.P1205A 0.21 deleterious(0.04) probably_damaging(0.992) TCGA-22-4613-01 1 99771562 99771562 A G LPPR4 Missense_Mutation p.R430G 0.31 deleterious(0) probably_damaging(0.926) TCGA-22-4613-01 20 13695501 13695501 C T ESF1 3'UTR 0.26 TCGA-22-4613-01 20 19665875 19665875 A T SLC24A3 Silent p.T398T 0.23 TCGA-22-4613-01 20 2446372 2446372 C G SNRPB Missense_Mutation p.E83D 0.29 tolerated(0.09) benign(0.147) TCGA-22-4613-01 20 25002053 25002053 A G ACSS1 Silent p.F360F 0.30 TCGA-22-4613-01 20 2776343 2776343 A T CPXM1 Missense_Mutation p.L541Q 0.19 tolerated(0.31) benign(0.052) TCGA-22-4613-01 20 29956507 29956507 C T DEFB118 Silent p.I18I 0.25 TCGA-22-4613-01 20 33517381 33517381 T C GSS Missense_Mutation p.Y375C 0.24 deleterious(0) probably_damaging(0.989) TCGA-22-4613-01 20 35467803 35467803 C A SOGA1 Silent p.R243R 0.36 TCGA-22-4613-01 20 37169808 37169808 A T RALGAPB Missense_Mutation p.K896M 0.37 deleterious(0) probably_damaging(0.999) TCGA-22-4613-01 20 37524217 37524217 G T PPP1R16B Missense_Mutation p.D111Y 0.23 deleterious(0) probably_damaging(0.933) TCGA-22-4613-01 20 377279 377279 G T TRIB3 Missense_Mutation p.G341V 0.32 tolerated(0.17) possibly_damaging(0.617) TCGA-22-4613-01 20 44506234 44506234 G T ZSWIM3 Missense_Mutation p.S346I 0.37 deleterious(0) benign(0.312) TCGA-22-4613-01 20 61525784 61525784 G A DIDO1 Silent p.L851L 0.27 TCGA-22-4613-01 21 10934070 10934070 T A TPTE Missense_Mutation p.M303L 0.03 tolerated(0.23) benign(0.034) TCGA-22-4613-01 21 11038936 11038936 G A BAGE2 RNA 0.04 TCGA-22-4613-01 21 27253850 27253850 C T APP 3'UTR 0.22 TCGA-22-4613-01 21 32617976 32617976 C A TIAM1 Missense_Mutation p.G471V 0.44 deleterious(0.01) possibly_damaging(0.792) TCGA-22-4613-01 21 37431134 37431134 C G SETD4 Missense_Mutation p.G18A 0.12 tolerated(0.1) benign(0.003) TCGA-22-4613-01 21 38309018 38309018 C G HLCS Missense_Mutation p.V243L 0.10 tolerated(0.17) benign(0.027) TCGA-22-4613-01 21 44296822 44296822 C T WDR4 Missense_Mutation p.E49K 0.26 tolerated(0.1) benign(0.04) TCGA-22-4613-01 21 46320303 46320303 C A ITGB2 Missense_Mutation p.A277S 0.14 tolerated(0.09) benign(0.428) TCGA-22-4613-01 21 47350716 47350716 A T PCBP3 Missense_Mutation p.L271F 0.08 tolerated(0.41) benign(0.015) TCGA-22-4613-01 21 47699911 47699911 T C MCM3AP Missense_Mutation p.K555E 0.10 deleterious(0.01) benign(0.045) TCGA-22-4613-01 22 16287677 16287677 G T POTEH Missense_Mutation p.P70H 0.12 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-22-4613-01 22 17309844 17309844 G A HSFY1P1 RNA 0.23 TCGA-22-4613-01 22 18301868 18301868 C A MICAL3 Missense_Mutation p.A1187S 0.27 benign(0.003) TCGA-22-4613-01 22 18769712 18769712 T C GGT3P RNA 0.10 TCGA-22-4613-01 22 19467448 19467448 C T CDC45 5'UTR 0.27 TCGA-22-4613-01 22 20080404 20080404 G T DGCR8 Missense_Mutation p.S560I 0.31 deleterious(0) probably_damaging(0.999) TCGA-22-4613-01 22 22749622 22749622 C T IGLV7-43 Missense_Mutation p.T49I 0.20 tolerated(0.22) benign(0.097) TCGA-22-4613-01 22 26164471 26164471 T C MYO18B Silent p.S196S 0.22 TCGA-22-4613-01 22 29885966 29885966 C A NEFH Missense_Mutation p.D779E 0.56 tolerated_low_confidence(0.4) probably_damaging(0.987) TCGA-22-4613-01 22 36684416 36684416 C A MYH9 Missense_Mutation p.R1605L 0.18 probably_damaging(0.971) TCGA-22-4613-01 22 40367029 40367029 C A GRAP2 Missense_Mutation p.R312S 0.30 deleterious(0.03) benign(0.26) TCGA-22-4613-01 22 42300914 42300914 C T SREBF2 Silent p.P1047P 0.18 TCGA-22-4613-01 22 50943701 50943701 C T LMF2 Missense_Mutation p.G372S 0.04 deleterious(0.05) possibly_damaging(0.874) TCGA-22-4613-01 2 109378557 109378557 T G RANBP2 Missense_Mutation p.V868G 0.33 deleterious(0) benign(0.017) TCGA-22-4613-01 2 112754908 112754908 G T MERTK Missense_Mutation p.D487Y 0.25 deleterious(0.03) possibly_damaging(0.526) TCGA-22-4613-01 2 116538458 116538458 C A DPP10 Missense_Mutation p.T461N 0.24 deleterious(0) possibly_damaging(0.635) TCGA-22-4613-01 2 120677773 120677773 T - PTPN4 Frame_Shift_Del p.F321Lfs*7 0.24 TCGA-22-4613-01 2 128477651 128477651 G T WDR33 Missense_Mutation p.Q650K 0.20 deleterious_low_confidence(0.01) unknown(0) TCGA-22-4613-01 2 130899969 130899969 G A CCDC74B Intron 0.22 TCGA-22-4613-01 2 132241747 132241747 C A MZT2A Missense_Mutation p.A122S 0.46 tolerated(0.29) benign(0.175) TCGA-22-4613-01 2 132263960 132263960 G T AC093838.4 RNA 0.39 TCGA-22-4613-01 2 133489393 133489393 A G NCKAP5 Missense_Mutation p.I1787T 0.18 deleterious(0.02) benign(0.028) TCGA-22-4613-01 2 135470778 135470778 G A TMEM163 Missense_Mutation p.A105V 0.32 tolerated(0.28) benign(0.391) TCGA-22-4613-01 2 136399333 136399333 G T R3HDM1 Missense_Mutation p.G483C 0.29 deleterious(0) probably_damaging(1) TCGA-22-4613-01 2 141202224 141202225 - A LRP1B Frame_Shift_Ins p.R3361Lfs*17 0.23 TCGA-22-4613-01 2 141771157 141771157 C A LRP1B Missense_Mutation p.G783V 0.23 probably_damaging(0.953) TCGA-22-4613-01 2 145156420 145156420 G A ZEB2 Silent p.S778S 0.31 TCGA-22-4613-01 2 162661104 162661104 T C SLC4A10 Silent p.F92F 0.22 TCGA-22-4613-01 2 162851843 162851843 C A DPP4 Missense_Mutation p.V698F 0.41 deleterious(0) probably_damaging(1) TCGA-22-4613-01 2 177016524 177016524 C A HOXD4 Missense_Mutation p.P55T 0.31 tolerated(0.4) benign(0.033) TCGA-22-4613-01 2 179550314 179550314 G A TTN Missense_Mutation p.P10775S 0.09 TCGA-22-4613-01 2 179587057 179587057 G C TTN Missense_Mutation p.S7486C 0.19 TCGA-22-4613-01 2 179590306 179590306 T C TTN Silent p.A6875A 0.22 TCGA-22-4613-01 2 179610664 179610664 C T TTN Intron 0.22 TCGA-22-4613-01 2 179734015 179734015 A T CCDC141 Silent p.V741V 0.22 TCGA-22-4613-01 2 182543262 182543262 C A NEUROD1 Missense_Mutation p.R109L 0.42 deleterious(0) probably_damaging(1) TCGA-22-4613-01 2 183731163 183731163 T A FRZB Missense_Mutation p.I40F 0.63 deleterious(0) possibly_damaging(0.781) TCGA-22-4613-01 2 1893036 1893036 C T MYT1L Missense_Mutation p.E831K 0.25 deleterious(0.05) benign(0.3) TCGA-22-4613-01 2 189953453 189953453 C T COL5A2 Missense_Mutation p.G205R 0.35 probably_damaging(0.975) TCGA-22-4613-01 2 191848427 191848427 G C STAT1 Missense_Mutation p.Q463E 0.06 deleterious(0) probably_damaging(0.999) TCGA-22-4613-01 2 219920115 219920115 G A IHH Silent p.A350A 0.54 TCGA-22-4613-01 2 228881146 228881146 G A SPHKAP Missense_Mutation p.A1475V 0.41 tolerated(0.38) benign(0.033) TCGA-22-4613-01 2 228881548 228881548 G C SPHKAP Missense_Mutation p.P1341R 0.45 tolerated(0.06) benign(0.146) TCGA-22-4613-01 2 238672186 238672186 G A LRRFIP1 Silent p.Q610Q 0.70 TCGA-22-4613-01 2 239261531 239261531 G A TRAF3IP1 Silent p.E505E 0.30 TCGA-22-4613-01 2 241066112 241066112 C A MYEOV2 Missense_Mutation p.E209D 0.64 tolerated_low_confidence(1) unknown(0) TCGA-22-4613-01 2 27305106 27305106 C T EMILIN1 Nonsense_Mutation p.Q223* 0.26 TCGA-22-4613-01 2 27360428 27360428 C A C2orf53 Missense_Mutation p.R257L 0.29 deleterious(0.01) possibly_damaging(0.736) TCGA-22-4613-01 2 27375610 27375610 G A TCF23 Missense_Mutation p.D174N 0.33 tolerated(0.06) benign(0.025) TCGA-22-4613-01 2 27429763 27429763 C G SLC5A6 Silent p.V147V 0.30 TCGA-22-4613-01 2 27721620 27721620 G A GCKR Silent p.L128L 0.39 TCGA-22-4613-01 2 29446232 29446232 G T ALK Missense_Mutation p.P1112Q 0.18 deleterious(0) probably_damaging(0.95) TCGA-22-4613-01 2 40366621 40366621 G A SLC8A1 Missense_Mutation p.A822V 0.28 deleterious(0) probably_damaging(1) TCGA-22-4613-01 2 48872250 48872250 G T STON1-GTF2A1L Missense_Mutation p.V832L 0.43 deleterious(0) benign(0.006) TCGA-22-4613-01 2 60687767 60687767 G A BCL11A Silent p.H760H 0.09 TCGA-22-4613-01 2 60688956 60688956 T A BCL11A Missense_Mutation p.Q364L 0.07 tolerated(0.34) possibly_damaging(0.525) TCGA-22-4613-01 2 62733316 62733316 G T TMEM17 5'UTR 0.53 TCGA-22-4613-01 2 7137077 7137077 G T RNF144A Missense_Mutation p.R7L 0.26 tolerated_low_confidence(0.06) possibly_damaging(0.505) TCGA-22-4613-01 2 71576311 71576311 A T ZNF638 Missense_Mutation p.H76L 0.28 deleterious(0.01) probably_damaging(0.958) TCGA-22-4613-01 2 74089375 74089375 G A STAMBP Missense_Mutation p.D422N 0.26 deleterious(0) probably_damaging(0.993) TCGA-22-4613-01 2 74460582 74460582 T C SLC4A5 Missense_Mutation p.M848V 0.32 deleterious(0) probably_damaging(0.997) TCGA-22-4613-01 2 79255402 79255402 G A REG3G Silent p.%3D 0.23 TCGA-22-4613-01 2 79350055 79350055 G T REG1A Missense_Mutation p.C137F 0.26 deleterious(0) probably_damaging(0.981) TCGA-22-4613-01 2 80085257 80085257 C G CTNNA2 Missense_Mutation p.I139M 0.49 deleterious(0) possibly_damaging(0.801) TCGA-22-4613-01 2 89156861 89156861 G C IGKC 3'UTR 0.30 TCGA-22-4613-01 3 112267449 112267449 C T ATG3 Missense_Mutation p.D92N 0.36 tolerated(0.1) benign(0.033) TCGA-22-4613-01 3 118753386 118753386 G A IGSF11 Missense_Mutation p.S15F 0.31 tolerated(0.28) possibly_damaging(0.485) TCGA-22-4613-01 3 118870083 118870083 A T C3orf30 Missense_Mutation p.N519Y 0.14 deleterious(0) benign(0.4) TCGA-22-4613-01 3 119900054 119900054 C T GPR156 Nonsense_Mutation p.W284* 0.31 TCGA-22-4613-01 3 121200428 121200428 T C POLQ Missense_Mutation p.N2068D 0.34 tolerated(0.09) possibly_damaging(0.834) TCGA-22-4613-01 3 121980393 121980393 A G CASR Missense_Mutation p.S171G 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-22-4613-01 3 122545685 122545685 G T DIRC2 Missense_Mutation p.G159V 0.09 deleterious(0) probably_damaging(0.913) TCGA-22-4613-01 3 124802767 124802767 G A SLC12A8 Silent p.L704L 0.16 TCGA-22-4613-01 3 124952367 124952367 C A ZNF148 Silent p.L401L 0.28 TCGA-22-4613-01 3 125822661 125822661 C A ALDH1L1 Silent p.R904R 0.21 TCGA-22-4613-01 3 130159169 130159169 C T COL6A5 Missense_Mutation p.A1996V 0.26 deleterious(0.01) possibly_damaging(0.589) TCGA-22-4613-01 3 130290100 130290100 G T COL6A6 Missense_Mutation p.G947V 0.40 deleterious(0) probably_damaging(1) TCGA-22-4613-01 3 131300447 131300447 G T CPNE4 Silent p.G281G 0.28 TCGA-22-4613-01 3 142185204 142185204 G T ATR Missense_Mutation p.P2287T 0.27 deleterious(0) probably_damaging(1) TCGA-22-4613-01 3 142681874 142681874 C T PAQR9 Missense_Mutation p.C102Y 0.38 tolerated(1) benign(0.002) TCGA-22-4613-01 3 143412060 143412060 C G SLC9A9 Missense_Mutation p.G208A 0.10 deleterious(0.02) probably_damaging(1) TCGA-22-4613-01 3 14581778 14581778 G T GRIP2 Intron 0.52 TCGA-22-4613-01 3 146173210 146173210 A G PLSCR2 Missense_Mutation p.I119T 0.10 deleterious(0) probably_damaging(0.993) TCGA-22-4613-01 3 148583320 148583320 G T CPA3 Missense_Mutation p.L43F 0.54 deleterious(0.02) probably_damaging(0.996) TCGA-22-4613-01 3 149260288 149260288 C A WWTR1 Missense_Mutation p.S202I 0.10 tolerated(0.09) benign(0.02) TCGA-22-4613-01 3 150321150 150321150 A T SELT Translation_Start_Site p.M1? 0.32 tolerated_low_confidence(0.36) benign(0.067) TCGA-22-4613-01 3 150883274 150883274 G T MED12L Missense_Mutation p.W442L 0.43 deleterious(0) probably_damaging(0.998) TCGA-22-4613-01 3 151166180 151166180 A G IGSF10 Missense_Mutation p.I530T 0.44 deleterious(0) probably_damaging(1) TCGA-22-4613-01 3 151538218 151538218 G A AADAC Missense_Mutation p.D137N 0.26 tolerated(0.45) benign(0.317) TCGA-22-4613-01 3 156763648 156763648 G T LEKR1 3'UTR 0.35 TCGA-22-4613-01 3 164906771 164906771 G T SLITRK3 Missense_Mutation p.H616Q 0.53 tolerated(0.37) benign(0.001) TCGA-22-4613-01 3 167031866 167031866 T A ZBBX Missense_Mutation p.Y438F 0.54 tolerated(0.54) benign(0.076) TCGA-22-4613-01 3 167245807 167245807 T C WDR49 Splice_Site p.X451_splice 0.27 TCGA-22-4613-01 3 167401960 167401960 C A PDCD10 3'UTR 0.86 TCGA-22-4613-01 3 169525219 169525220 GC A LRRC34 Frame_Shift_Del p.L147Ffs*10 0.16 TCGA-22-4613-01 3 169998110 169998110 A T PRKCI Missense_Mutation p.K267N 0.58 deleterious(0) probably_damaging(0.988) TCGA-22-4613-01 3 172482145 172482145 T G ECT2 Silent p.R382R 0.07 TCGA-22-4613-01 3 173998540 173998540 G C NLGN1 Missense_Mutation p.R640T 0.11 tolerated(0.63) benign(0.08) TCGA-22-4613-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.34 deleterious(0.02) probably_damaging(0.959) TCGA-22-4613-01 3 181430281 181430281 A T SOX2 Missense_Mutation p.M45L 0.30 deleterious(0.02) probably_damaging(0.997) TCGA-22-4613-01 3 182947453 182947453 C A MCF2L2 Splice_Site p.X682_splice 0.53 TCGA-22-4613-01 3 185184731 185184731 A G MAP3K13 Silent p.K541K 0.08 TCGA-22-4613-01 3 186370500 186370500 C A FETUB 3'UTR 0.22 TCGA-22-4613-01 3 193174803 193174803 C A ATP13A4 Missense_Mutation p.C634F 0.63 deleterious(0) probably_damaging(0.971) TCGA-22-4613-01 3 194309209 194309209 C A TMEM44 3'UTR 0.33 TCGA-22-4613-01 3 30045356 30045356 A C RBMS3 3'UTR 0.28 TCGA-22-4613-01 3 36779824 36779824 G - DCLK3 Frame_Shift_Del p.R110Gfs*69 0.43 TCGA-22-4613-01 3 38889189 38889189 G A SCN11A Missense_Mutation p.P1458S 0.44 tolerated(1) probably_damaging(1) TCGA-22-4613-01 3 46480790 46480790 T C LTF Silent p.Q635Q 0.41 TCGA-22-4613-01 3 47910733 47910733 C - MAP4 Frame_Shift_Del p.A982Qfs*13 0.51 TCGA-22-4613-01 3 52417486 52417486 G T DNAH1 Missense_Mutation p.D2676Y 0.50 probably_damaging(0.98) TCGA-22-4613-01 3 56667894 56667894 C G FAM208A Missense_Mutation p.Q975H 0.59 tolerated(0.2) possibly_damaging(0.819) TCGA-22-4613-01 3 58156459 58156459 T C FLNB Silent p.P2624P 0.43 TCGA-22-4613-01 3 9482323 9482323 G A SETD5 Missense_Mutation p.D251N 0.54 tolerated(0.08) benign(0.268) TCGA-22-4613-01 4 105393508 105393508 T A CXXC4 Missense_Mutation p.S359C 0.40 deleterious(0.01) possibly_damaging(0.699) TCGA-22-4613-01 4 113540355 113540355 T C C4orf21 Silent p.K281K 0.44 TCGA-22-4613-01 4 115997817 115997818 - T NDST4 Frame_Shift_Ins p.G126Rfs*9 0.30 TCGA-22-4613-01 4 122749310 122749310 T G BBS7 Silent p.R669R 0.38 TCGA-22-4613-01 4 146461124 146461124 G C SMAD1 Missense_Mutation p.S190T 0.35 tolerated(0.3) benign(0.002) TCGA-22-4613-01 4 159547986 159547986 A G RXFP1 Missense_Mutation p.N257S 0.42 deleterious(0.01) probably_damaging(0.99) TCGA-22-4613-01 4 162421275 162421275 C A FSTL5 Missense_Mutation p.G451W 0.35 deleterious(0) probably_damaging(0.998) TCGA-22-4613-01 4 169173723 169173723 T C DDX60 Silent p.L1214L 0.46 TCGA-22-4613-01 4 173269755 173269755 C A GALNTL6 Silent p.L156L 0.46 TCGA-22-4613-01 4 177138028 177138028 C A ASB5 Missense_Mutation p.R268L 0.36 deleterious(0.02) possibly_damaging(0.744) TCGA-22-4613-01 4 178881979 178881979 G C LINC01098 5'UTR 0.47 TCGA-22-4613-01 4 20525428 20525428 T C SLIT2 Silent p.F392F 0.30 TCGA-22-4613-01 4 30724425 30724425 A C PCDH7 Missense_Mutation p.T461P 0.29 tolerated(0.07) possibly_damaging(0.537) TCGA-22-4613-01 4 42119660 42119660 C G BEND4 Missense_Mutation p.A494P 0.30 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-22-4613-01 4 42446601 42446601 C T ATP8A1 Nonsense_Mutation p.W1003* 0.22 TCGA-22-4613-01 4 42895516 42895516 A G GRXCR1 Missense_Mutation p.D78G 0.31 tolerated(0.24) possibly_damaging(0.556) TCGA-22-4613-01 4 435662 435662 T C ZNF721 Missense_Mutation p.Y865C 0.32 deleterious(0.02) probably_damaging(1) TCGA-22-4613-01 4 55979624 55979624 G A KDR Nonsense_Mutation p.R275* 0.24 TCGA-22-4613-01 4 62800567 62800567 G C LPHN3 Missense_Mutation p.E640Q 0.22 tolerated(0.29) probably_damaging(0.924) TCGA-22-4613-01 4 66217280 66217280 C A EPHA5 Missense_Mutation p.G779C 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-22-4613-01 4 71389637 71389637 C A AMTN Missense_Mutation p.P64Q 0.25 deleterious(0.03) benign(0.002) TCGA-22-4613-01 4 73012893 73012893 C A NPFFR2 Missense_Mutation p.D311E 0.49 tolerated(0.53) benign(0.123) TCGA-22-4613-01 4 76447157 76447157 G T THAP6 Intron 0.56 TCGA-22-4613-01 4 76523342 76523342 T C CDKL2 Silent p.L313L 0.41 TCGA-22-4613-01 4 77003484 77003484 G A ART3 Missense_Mutation p.A193T 0.26 tolerated(0.29) benign(0.074) TCGA-22-4613-01 4 79166399 79166399 C G FRAS1 Missense_Mutation p.Q77E 0.29 benign(0.066) TCGA-22-4613-01 4 81188121 81188121 A C FGF5 Missense_Mutation p.Q48P 0.36 tolerated(0.32) benign(0) TCGA-22-4613-01 4 84216553 84216553 C T HPSE Missense_Mutation p.A526T 0.45 tolerated(0.05) possibly_damaging(0.756) TCGA-22-4613-01 5 10239306 10239306 G C FAM173B Missense_Mutation p.T60R 0.13 deleterious(0) possibly_damaging(0.872) TCGA-22-4613-01 5 125816199 125816199 T G GRAMD3 Missense_Mutation p.S227A 0.44 deleterious(0.02) probably_damaging(0.929) TCGA-22-4613-01 5 140432759 140432759 C A PCDHB1 Missense_Mutation p.N568K 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-22-4613-01 5 140625340 140625340 G T PCDHB15 Missense_Mutation p.R65L 0.52 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-22-4613-01 5 140626979 140626979 G T PCDHB15 Missense_Mutation p.E611D 0.47 tolerated_low_confidence(0.16) benign(0.193) TCGA-22-4613-01 5 140741405 140741405 G T PCDHGB2 Missense_Mutation p.G568V 0.40 tolerated(0.05) possibly_damaging(0.707) TCGA-22-4613-01 5 140751962 140751963 - T PCDHGB3 Frame_Shift_Ins p.L668Ffs*7 0.34 TCGA-22-4613-01 5 151772031 151772031 G T NMUR2 Missense_Mutation p.N323K 0.40 deleterious(0.02) possibly_damaging(0.529) TCGA-22-4613-01 5 153056653 153056653 G C GRIA1 Missense_Mutation p.G331R 0.42 deleterious(0.04) probably_damaging(1) TCGA-22-4613-01 5 154393632 154393632 G T KIF4B Silent p.P71P 0.43 TCGA-22-4613-01 5 162987 162987 G C PLEKHG4B Missense_Mutation p.G578R 0.43 tolerated(0.21) benign(0.001) TCGA-22-4613-01 5 23521285 23521285 C A PRDM9 Missense_Mutation p.L169M 0.52 tolerated_low_confidence(0.08) benign(0.348) TCGA-22-4613-01 5 24488079 24488079 C A CDH10 Missense_Mutation p.R687L 0.22 deleterious(0.01) probably_damaging(0.982) TCGA-22-4613-01 5 26881478 26881478 G A CDH9 Nonsense_Mutation p.Q713* 0.50 TCGA-22-4613-01 5 26906096 26906096 G TC CDH9 Frame_Shift_Ins p.N262Kfs*15 0.14 TCGA-22-4613-01 5 32380216 32380216 C A ZFR Missense_Mutation p.A902S 0.40 tolerated(0.87) unknown(0) TCGA-22-4613-01 5 33576688 33576688 G T ADAMTS12 Missense_Mutation p.T1148N 0.24 deleterious(0.02) possibly_damaging(0.448) TCGA-22-4613-01 5 33951616 33951616 C G SLC45A2 Intron 0.16 TCGA-22-4613-01 5 34811911 34811911 C T RAI14 Silent p.N202N 0.06 TCGA-22-4613-01 5 36049139 36049139 C T UGT3A2 Missense_Mutation p.G232D 0.16 tolerated(0.07) benign(0.314) TCGA-22-4613-01 5 41181661 41181661 C A C6 Missense_Mutation p.V243L 0.31 deleterious(0.05) benign(0.098) TCGA-22-4613-01 5 43659445 43659446 TG - NNT Frame_Shift_Del p.V878Gfs*8 0.24 TCGA-22-4613-01 5 63256745 63256745 C A HTR1A Nonsense_Mutation p.E268* 0.36 TCGA-22-4613-01 5 68470110 68470110 G C CCNB1 Silent p.L193L 0.41 TCGA-22-4613-01 5 96235862 96235862 G T ERAP2 Missense_Mutation p.C514F 0.38 deleterious(0.02) possibly_damaging(0.825) TCGA-22-4613-01 5 9629767 9629767 G A TAS2R1 Silent p.V126V 0.30 TCGA-22-4613-01 6 100061970 100061970 G - PRDM13 Frame_Shift_Del p.G487Afs*4 0.29 TCGA-22-4613-01 6 100868805 100868805 G A SIM1 Missense_Mutation p.S343F 0.29 deleterious(0) possibly_damaging(0.597) TCGA-22-4613-01 6 101311979 101311979 C T ASCC3 Missense_Mutation p.E68K 0.31 tolerated(0.69) benign(0.003) TCGA-22-4613-01 6 109766434 109766434 G A MICAL1 Silent p.G949G 0.33 TCGA-22-4613-01 6 112451160 112451160 T A LAMA4 Nonsense_Mutation p.K1351* 0.31 TCGA-22-4613-01 6 121768134 121768134 T C GJA1 Silent p.D47D 0.30 TCGA-22-4613-01 6 124676411 124676411 A T NKAIN2 Splice_Site p.X65_splice 0.31 TCGA-22-4613-01 6 127767951 127767951 T A KIAA0408 Missense_Mutation p.M505L 0.26 tolerated(0.2) benign(0.005) TCGA-22-4613-01 6 127767952 127767952 G T KIAA0408 Silent p.P504P 0.26 TCGA-22-4613-01 6 127796469 127796469 C T SOGA3 Missense_Mutation p.R901H 0.36 deleterious(0.04) benign(0.445) TCGA-22-4613-01 6 13306671 13306671 C G TBC1D7 Missense_Mutation p.A252P 0.26 tolerated(0.23) benign(0.064) TCGA-22-4613-01 6 13306672 13306672 C A TBC1D7 Missense_Mutation p.M251I 0.26 tolerated(0.13) benign(0.003) TCGA-22-4613-01 6 136599046 136599046 C A BCLAF1 Missense_Mutation p.G325C 0.10 deleterious(0.02) probably_damaging(0.984) TCGA-22-4613-01 6 137524818 137524818 T C IFNGR1 Missense_Mutation p.Q184R 0.19 tolerated(0.59) benign(0.009) TCGA-22-4613-01 6 146480689 146480689 C T GRM1 Silent p.A302A 0.17 TCGA-22-4613-01 6 146755690 146755690 C G GRM1 Missense_Mutation p.R1115G 0.27 tolerated_low_confidence(0.44) benign(0.032) TCGA-22-4613-01 6 147123959 147123959 A T ADGB Intron 0.22 TCGA-22-4613-01 6 150023190 150023190 C A LATS1 Missense_Mutation p.V25F 0.22 deleterious_low_confidence(0) benign(0.001) TCGA-22-4613-01 6 155116180 155116180 C G SCAF8 Silent p.V171V 0.06 TCGA-22-4613-01 6 160978440 160978440 C T LPA Missense_Mutation p.E1599K 0.29 tolerated_low_confidence(0.06) probably_damaging(0.983) TCGA-22-4613-01 6 165693545 165693545 G A C6orf118 3'UTR 0.34 TCGA-22-4613-01 6 166780282 166780282 C T MPC1 Splice_Site p.X58_splice 0.29 TCGA-22-4613-01 6 167591894 167591894 G T TCP10L2 Missense_Mutation p.R174I 0.13 deleterious(0) possibly_damaging(0.735) TCGA-22-4613-01 6 168440882 168440882 G A KIF25 Missense_Mutation p.C211Y 0.26 tolerated(1) benign(0.425) TCGA-22-4613-01 6 169632797 169632797 C A THBS2 Missense_Mutation p.V632F 0.29 tolerated(0.95) benign(0) TCGA-22-4613-01 6 170627660 170627695 CCCTGAATCCAGGCGAGAAGTTCCCATGTGTTCAGA - FAM120B In_Frame_Del p.S397_E408del 0.24 TCGA-22-4613-01 6 26369015 26369015 G T BTN3A2 Missense_Mutation p.G103V 0.13 tolerated(0.1) possibly_damaging(0.832) TCGA-22-4613-01 6 28268912 28268912 T C PGBD1 Silent p.F427F 0.33 TCGA-22-4613-01 6 28297141 28297141 C A ZSCAN31 Missense_Mutation p.G107V 0.31 deleterious(0) probably_damaging(0.999) TCGA-22-4613-01 6 29053994 29053994 C A OR2B3 3'UTR 0.29 TCGA-22-4613-01 6 29054731 29054731 C - OR2B3 Frame_Shift_Del p.A99Pfs*9 0.25 TCGA-22-4613-01 6 29342776 29342776 T C OR12D3 Missense_Mutation p.T97A 0.34 tolerated(1) benign(0.002) TCGA-22-4613-01 6 30557481 30557481 G T ABCF1 Missense_Mutation p.R683I 0.27 deleterious(0.04) benign(0.444) TCGA-22-4613-01 6 31997032 31997032 A G C4B Missense_Mutation p.Y1198C 0.22 deleterious(0) probably_damaging(1) TCGA-22-4613-01 6 32549334 32549334 T A HLA-DRB1 Nonsense_Mutation p.R218* 0.04 TCGA-22-4613-01 6 32803537 32803537 C T TAP2 Missense_Mutation p.G208S 0.30 deleterious(0.04) probably_damaging(0.956) TCGA-22-4613-01 6 32945252 32945253 - A BRD2 Frame_Shift_Ins p.E413Gfs*5 0.24 TCGA-22-4613-01 6 35209601 35209601 C A SCUBE3 Missense_Mutation p.T444K 0.38 deleterious(0.02) benign(0.142) TCGA-22-4613-01 6 36172574 36172574 C T BRPF3 Nonsense_Mutation p.Q530* 0.23 TCGA-22-4613-01 6 36929703 36929703 C A PI16 Missense_Mutation p.P182Q 0.25 tolerated(0.07) possibly_damaging(0.756) TCGA-22-4613-01 6 38690853 38690853 C A DNAH8 5'Flank 0.27 TCGA-22-4613-01 6 38831802 38831802 A T DNAH8 Missense_Mutation p.D1938V 0.23 possibly_damaging(0.906) TCGA-22-4613-01 6 42797882 42797882 C G GLTSCR1L Missense_Mutation p.T604R 0.21 tolerated(0.26) benign(0.081) TCGA-22-4613-01 6 49754834 49754834 C G PGK2 Missense_Mutation p.V23L 0.23 deleterious(0) benign(0.162) TCGA-22-4613-01 6 50682845 50682845 C G TFAP2D Nonsense_Mutation p.S19* 0.26 TCGA-22-4613-01 6 50740364 50740364 C A TFAP2D Silent p.I382I 0.35 TCGA-22-4613-01 6 56044420 56044420 G T COL21A1 Missense_Mutation p.A199E 0.28 deleterious(0.01) probably_damaging(0.919) TCGA-22-4613-01 6 56458768 56458768 T A DST Missense_Mutation p.D1517V 0.20 benign(0.139) TCGA-22-4613-01 6 56919312 56919312 G T KIAA1586 Missense_Mutation p.R672L 0.35 deleterious(0.04) benign(0.067) TCGA-22-4613-01 6 63990387 63990387 A T LGSN Missense_Mutation p.C357S 0.27 deleterious(0) possibly_damaging(0.898) TCGA-22-4613-01 6 7355339 7355339 T C CAGE1 Silent p.T768T 0.23 TCGA-22-4613-01 6 81053554 81053554 A G BCKDHB 3'UTR 0.26 TCGA-22-4613-01 6 82459917 82459917 A T FAM46A Missense_Mutation p.L275H 0.26 deleterious(0) probably_damaging(1) TCGA-22-4613-01 6 82881130 82881130 C A IBTK 3'UTR 0.21 TCGA-22-4613-01 6 84884584 84884584 C G KIAA1009 Silent p.A629A 0.15 TCGA-22-4613-01 6 88136346 88136346 C A C6ORF165 Missense_Mutation p.P315T 0.30 tolerated(0.09) probably_damaging(0.953) TCGA-22-4613-01 6 96651254 96651255 CA - FUT9 Frame_Shift_Del p.Q75Dfs*3 0.24 TCGA-22-4613-01 7 100677255 100677255 C A MUC17 Missense_Mutation p.T853N 0.24 unknown(0) TCGA-22-4613-01 7 100684625 100684625 A T MUC17 Missense_Mutation p.T3310S 0.26 benign(0.318) TCGA-22-4613-01 7 100842049 100842049 C T MOGAT3 Silent p.G117G 0.31 TCGA-22-4613-01 7 105099694 105099694 T C PUS7 Silent p.A590A 0.25 TCGA-22-4613-01 7 107398830 107398830 A G CBLL1 Missense_Mutation p.H228R 0.30 tolerated(0.27) possibly_damaging(0.844) TCGA-22-4613-01 7 110603570 110603570 T C IMMP2L Silent p.E97E 0.29 TCGA-22-4613-01 7 121653494 121653494 G A PTPRZ1 Missense_Mutation p.S1465N 0.13 tolerated_low_confidence(0.6) benign(0.004) TCGA-22-4613-01 7 123119903 123119903 T C IQUB Silent p.R452R 0.31 TCGA-22-4613-01 7 126173774 126173774 T A GRM8 Missense_Mutation p.E554D 0.28 tolerated(0.3) benign(0.058) TCGA-22-4613-01 7 136587972 136587972 C G CHRM2 Intron 0.28 TCGA-22-4613-01 7 142423439 142423439 C G TRBV27 Missense_Mutation p.T32R 0.34 TCGA-22-4613-01 7 142749667 142749667 C A OR6V1 Missense_Mutation p.P77H 0.29 deleterious(0.01) probably_damaging(0.994) TCGA-22-4613-01 7 143175414 143175414 G - TAS2R41 Frame_Shift_Del p.V151* 0.22 TCGA-22-4613-01 7 143632563 143632563 C T OR2F2 Nonsense_Mutation p.Q80* 0.29 TCGA-22-4613-01 7 143632667 143632667 C - OR2F2 Frame_Shift_Del p.L115Wfs*3 0.29 TCGA-22-4613-01 7 148851301 148851301 G C ZNF398 Missense_Mutation p.A97P 0.25 deleterious(0.01) possibly_damaging(0.884) TCGA-22-4613-01 7 148851390 148851390 G T ZNF398 Missense_Mutation p.W126C 0.37 deleterious(0.02) probably_damaging(0.997) TCGA-22-4613-01 7 149514991 149514991 C G SSPO Intron 0.18 TCGA-22-4613-01 7 153584721 153584721 T C DPP6 5'UTR 0.29 TCGA-22-4613-01 7 15651968 15651968 C G MEOX2 3'UTR 0.34 TCGA-22-4613-01 7 15725582 15725582 T C MEOX2 Missense_Mutation p.Y149C 0.38 deleterious(0.02) possibly_damaging(0.536) TCGA-22-4613-01 7 21778329 21778329 G C DNAH11 Missense_Mutation p.E2559D 0.56 probably_damaging(1) TCGA-22-4613-01 7 26224510 26224520 GCCACAGAAGA - NFE2L3 Frame_Shift_Del p.A398Qfs*3 0.19 TCGA-22-4613-01 7 29915547 29915547 G T WIPF3 Missense_Mutation p.Q64H 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-22-4613-01 7 31123863 31123863 C G ADCYAP1R1 Missense_Mutation p.Q146E 0.18 tolerated(0.28) probably_damaging(0.928) TCGA-22-4613-01 7 31124950 31124950 A G ADCYAP1R1 Missense_Mutation p.I188V 0.35 deleterious(0) probably_damaging(0.998) TCGA-22-4613-01 7 32209413 32209413 C A PDE1C Missense_Mutation p.V98L 0.23 tolerated(0.67) benign(0.002) TCGA-22-4613-01 7 35244188 35244188 A G TBX20 Silent p.S299S 0.37 TCGA-22-4613-01 7 42959222 42959222 T A PSMA2 Intron 0.17 TCGA-22-4613-01 7 44104982 44104982 C T PGAM2 Silent p.K49K 0.26 TCGA-22-4613-01 7 4901270 4901270 C T PAPOLB Missense_Mutation p.E57K 0.18 deleterious(0.01) probably_damaging(0.921) TCGA-22-4613-01 7 7472140 7472140 C T COL28A1 Silent p.P654P 0.24 TCGA-22-4613-01 7 77579098 77579098 G T PHTF2 Missense_Mutation p.G654V 0.25 deleterious(0) probably_damaging(0.998) TCGA-22-4613-01 7 84644417 84644417 C T SEMA3D Nonsense_Mutation p.W554* 0.28 TCGA-22-4613-01 7 84702362 84702362 G A SEMA3D Silent p.P137P 0.24 TCGA-22-4613-01 7 87774742 87774742 G A ADAM22 Missense_Mutation p.E469K 0.24 tolerated(0.14) benign(0.123) TCGA-22-4613-01 7 908998 908998 C T SUN1 Missense_Mutation p.P665S 0.25 deleterious(0) probably_damaging(0.996) TCGA-22-4613-01 7 92134131 92134131 A G PEX1 Silent p.D662D 0.27 TCGA-22-4613-01 7 925710 925710 A T GET4 Missense_Mutation p.K58M 0.18 deleterious(0) probably_damaging(0.988) TCGA-22-4613-01 7 93065476 93065476 A C CALCR Missense_Mutation p.F347V 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-22-4613-01 8 101252883 101252883 C G SPAG1 Missense_Mutation p.L845V 0.47 deleterious(0) probably_damaging(1) TCGA-22-4613-01 8 108970453 108970453 G T RSPO2 Missense_Mutation p.S157R 0.46 deleterious(0) benign(0.446) TCGA-22-4613-01 8 108972938 108972938 C A RSPO2 Missense_Mutation p.G131C 0.19 deleterious(0) probably_damaging(0.996) TCGA-22-4613-01 8 109001408 109001408 G C RSPO2 Missense_Mutation p.S53R 0.48 deleterious(0) benign(0.17) TCGA-22-4613-01 8 113331147 113331147 A T CSMD3 Missense_Mutation p.F2427I 0.25 deleterious(0) benign(0.316) TCGA-22-4613-01 8 117668153 117668154 CC G EIF3H Frame_Shift_Del p.W216Cfs*31 0.19 TCGA-22-4613-01 8 118159291 118159291 C A SLC30A8 Missense_Mutation p.S57Y 0.33 deleterious(0.03) benign(0.316) TCGA-22-4613-01 8 124140744 124140744 T C TBC1D31 Missense_Mutation p.L703S 0.13 deleterious(0) possibly_damaging(0.857) TCGA-22-4613-01 8 12943812 12943812 T G DLC1 Silent p.R1485R 0.40 TCGA-22-4613-01 8 131797656 131797656 G C ADCY8 Silent p.A1042A 0.11 TCGA-22-4613-01 8 133144504 133144504 G T KCNQ3 Missense_Mutation p.P603T 0.40 tolerated(0.12) possibly_damaging(0.661) TCGA-22-4613-01 8 143846081 143846081 C A LYNX1 Missense_Mutation p.G113V 0.23 deleterious(0) probably_damaging(0.989) TCGA-22-4613-01 8 145138899 145138899 G T GPAA1 Missense_Mutation p.G191V 0.10 deleterious(0) probably_damaging(1) TCGA-22-4613-01 8 15967535 15967535 A - MSR1 3'UTR 0.34 TCGA-22-4613-01 8 23708998 23708998 A T STC1 Missense_Mutation p.V103D 0.19 deleterious(0) possibly_damaging(0.529) TCGA-22-4613-01 8 3165281 3165281 C A CSMD1 Missense_Mutation p.A1296S 0.42 possibly_damaging(0.579) TCGA-22-4613-01 8 35583956 35583956 C A UNC5D Silent p.I530I 0.40 TCGA-22-4613-01 8 39537603 39537603 C A ADAM18 Missense_Mutation p.A560D 0.18 tolerated(0.2) benign(0.325) TCGA-22-4613-01 8 39624421 39624421 T A ADAM2 Missense_Mutation p.I485L 0.31 tolerated(0.96) benign(0.006) TCGA-22-4613-01 8 40438772 40438772 G T ZMAT4 Missense_Mutation p.R196S 0.20 tolerated(0.6) possibly_damaging(0.604) TCGA-22-4613-01 8 43197461 43197461 G C POTEA RNA 0.30 TCGA-22-4613-01 8 55533890 55533890 C T RP1 Missense_Mutation p.R122W 0.45 deleterious(0) probably_damaging(0.915) TCGA-22-4613-01 8 62460751 62460751 T A ASPH Missense_Mutation p.E548V 0.23 deleterious(0.02) possibly_damaging(0.536) TCGA-22-4613-01 8 6874235 6874235 G T DEFA3 Silent p.S46S 0.08 TCGA-22-4613-01 8 70585235 70585235 C A SLCO5A1 Nonsense_Mutation p.E806* 0.45 TCGA-22-4613-01 8 74650571 74650571 C A STAU2 5'UTR 0.25 TCGA-22-4613-01 8 77616444 77616444 G T ZFHX4 Missense_Mutation p.D41Y 0.09 probably_damaging(0.934) TCGA-22-4613-01 8 77766009 77766009 T A ZFHX4 Missense_Mutation p.S2284R 0.47 possibly_damaging(0.674) TCGA-22-4613-01 8 87424104 87424104 G T WWP1 Splice_Site p.X354_splice 0.21 TCGA-22-4613-01 8 87549866 87549866 C T CPNE3 Missense_Mutation p.R179W 0.37 deleterious(0) probably_damaging(0.952) TCGA-22-4613-01 8 93017285 93017285 C T RUNX1T1 Intron 0.50 TCGA-22-4613-01 9 104152739 104152739 C A MRPL50 3'UTR 0.06 TCGA-22-4613-01 9 104170972 104170972 A G ZNF189 Missense_Mutation p.R308G 0.29 deleterious(0) possibly_damaging(0.844) TCGA-22-4613-01 9 108123571 108123571 G - SLC44A1 Frame_Shift_Del p.A288Pfs*14 0.27 TCGA-22-4613-01 9 108128711 108128711 G T SLC44A1 Splice_Site p.X498_splice 0.28 TCGA-22-4613-01 9 114825260 114825260 G T SUSD1 Missense_Mutation p.R603S 0.30 tolerated(0.45) benign(0.023) TCGA-22-4613-01 9 127619793 127619793 G A WDR38 Missense_Mutation p.V277M 0.30 tolerated(0.06) possibly_damaging(0.759) TCGA-22-4613-01 9 130947996 130947996 G T CIZ1 Missense_Mutation p.P140T 0.20 deleterious_low_confidence(0.05) benign(0.406) TCGA-22-4613-01 9 131038466 131038466 A T SWI5 Missense_Mutation p.K14N 0.31 tolerated_low_confidence(0.07) benign(0.021) TCGA-22-4613-01 9 137809789 137809789 C G FCN1 5'UTR 0.22 TCGA-22-4613-01 9 139369100 139369100 T C SEC16A Missense_Mutation p.T990A 0.45 tolerated(1) benign(0.002) TCGA-22-4613-01 9 21971186 21971186 G A CDKN2A Nonsense_Mutation p.R58* 0.31 TCGA-22-4613-01 9 26995496 26995496 T A LRRC19 3'UTR 0.58 TCGA-22-4613-01 9 35616508 35616508 T G CD72 Intron 0.08 TCGA-22-4613-01 9 35685691 35685691 G C TPM2 Silent p.A109A 0.68 TCGA-22-4613-01 9 37746351 37746351 G A FRMPD1 Missense_Mutation p.G1441E 0.33 tolerated(0.08) benign(0.172) TCGA-22-4613-01 9 5763761 5763761 C T KIAA1432 Silent p.L912L 0.46 TCGA-22-4613-01 9 712600 712600 G T KANK1 Missense_Mutation p.D612Y 0.50 tolerated(0.16) possibly_damaging(0.869) TCGA-22-4613-01 9 75407166 75407166 G A TMC1 Silent p.K488K 0.32 TCGA-22-4613-01 9 77418743 77418743 C A TRPM6 Missense_Mutation p.Q566H 0.34 tolerated(0.4) probably_damaging(0.999) TCGA-22-4613-01 9 84199166 84199166 T C TLE1 Missense_Mutation p.I754V 0.28 deleterious(0.03) probably_damaging(0.998) TCGA-22-4613-01 9 85615852 85615852 C T RASEF Missense_Mutation p.G466R 0.30 tolerated(0.62) benign(0.002) TCGA-22-4613-01 9 90501370 90501370 T A SPATA31E1 Silent p.P656P 0.30 TCGA-22-4613-01 9 91150497 91150497 G C NXNL2 Missense_Mutation p.D50H 0.14 deleterious(0.01) benign(0.222) TCGA-22-4613-01 9 91940430 91940430 G T SECISBP2 Missense_Mutation p.A91S 0.30 tolerated(0.94) benign(0.019) TCGA-22-4613-01 X 100273996 100273996 C T TRMT2B Missense_Mutation p.C451Y 0.34 deleterious(0.02) possibly_damaging(0.698) TCGA-22-4613-01 X 101153010 101153010 A G ZMAT1 Silent p.H112H 0.17 TCGA-22-4613-01 X 102931462 102931462 C T MORF4L2 Missense_Mutation p.C165Y 0.39 tolerated(1) benign(0) TCGA-22-4613-01 X 102962291 102962291 C G GLRA4 Missense_Mutation p.R412P 0.15 deleterious_low_confidence(0) benign(0.175) TCGA-22-4613-01 X 102962376 102962376 C T GLRA4 Missense_Mutation p.A384T 0.21 tolerated_low_confidence(0.47) benign(0) TCGA-22-4613-01 X 104464885 104464885 G T TEX13A Missense_Mutation p.A66D 0.39 deleterious(0) benign(0.342) TCGA-22-4613-01 X 105153578 105153578 C A NRK Silent p.R650R 0.21 TCGA-22-4613-01 X 106411002 106411002 G T NUP62CL Missense_Mutation p.T24K 0.13 tolerated(0.13) benign(0.209) TCGA-22-4613-01 X 107018452 107018452 G T TSC22D3 Missense_Mutation p.N66K 0.11 deleterious(0.01) benign(0.055) TCGA-22-4613-01 X 109697270 109697270 G T RGAG1 Missense_Mutation p.G1142V 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-22-4613-01 X 111195429 111195429 G C TRPC5 Missense_Mutation p.L74V 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-22-4613-01 X 111698772 111698772 C A ZCCHC16 Silent p.A272A 0.46 TCGA-22-4613-01 X 114357364 114357364 G T LRCH2 Missense_Mutation p.P687T 0.11 deleterious(0) probably_damaging(1) TCGA-22-4613-01 X 118242299 118242299 C A KIAA1210 Splice_Site p.X304_splice 0.35 TCGA-22-4613-01 X 119575625 119575625 C T LAMP2 Silent p.R351R 0.11 TCGA-22-4613-01 X 125685490 125685490 C A DCAF12L1 Missense_Mutation p.G368C 0.50 deleterious(0.02) probably_damaging(0.993) TCGA-22-4613-01 X 125685718 125685718 C A DCAF12L1 Missense_Mutation p.G292W 0.41 deleterious(0) possibly_damaging(0.6) TCGA-22-4613-01 X 128692840 128692840 C A OCRL Missense_Mutation p.S195Y 0.08 deleterious(0.03) benign(0.109) TCGA-22-4613-01 X 128886218 128886218 A G XPNPEP2 Missense_Mutation p.Y305C 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-22-4613-01 X 129201404 129201404 C A ELF4 Silent p.L428L 0.08 TCGA-22-4613-01 X 129203533 129203533 G C ELF4 Missense_Mutation p.T310R 0.09 tolerated(0.5) benign(0.012) TCGA-22-4613-01 X 12938413 12938413 C T TLR8 Silent p.S418S 0.22 TCGA-22-4613-01 X 130409704 130409704 T A IGSF1 Missense_Mutation p.S983C 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-22-4613-01 X 134990767 134990767 A G SAGE1 Missense_Mutation p.R478G 0.30 tolerated(0.09) possibly_damaging(0.465) TCGA-22-4613-01 X 135302935 135302935 T A MAP7D3 Missense_Mutation p.E825D 0.11 tolerated(0.07) benign(0.152) TCGA-22-4613-01 X 139038432 139038432 C A CXorf66 Missense_Mutation p.A237S 0.40 tolerated(0.13) possibly_damaging(0.866) TCGA-22-4613-01 X 150348607 150348607 C A GPR50 Missense_Mutation p.N184K 0.11 tolerated(0.08) benign(0.244) TCGA-22-4613-01 X 151091965 151091965 G T MAGEA4 5'UTR 0.11 TCGA-22-4613-01 X 151870148 151870148 G T MAGEA6 Nonsense_Mutation p.E280* 0.07 TCGA-22-4613-01 X 152159311 152159311 G T PNMA5 Missense_Mutation p.P278T 0.08 deleterious(0.05) probably_damaging(0.939) TCGA-22-4613-01 X 153040421 153040421 G T PLXNB3 Missense_Mutation p.A1363S 0.12 deleterious(0) benign(0.23) TCGA-22-4613-01 X 153284161 153284161 G T IRAK1 Silent p.S206S 0.12 TCGA-22-4613-01 X 15333585 15333585 G A ASB11 Missense_Mutation p.A48V 0.06 deleterious(0.02) probably_damaging(0.998) TCGA-22-4613-01 X 153880866 153880866 C A CTAG2 Missense_Mutation p.E103D 0.10 tolerated_low_confidence(0.08) possibly_damaging(0.874) TCGA-22-4613-01 X 154157610 154157610 G T F8 Silent p.A1485A 0.08 TCGA-22-4613-01 X 154261828 154261828 G T FUNDC2 Missense_Mutation p.W95L 0.10 tolerated(0.05) probably_damaging(0.968) TCGA-22-4613-01 X 18183311 18183311 G T BEND2 Missense_Mutation p.L740I 0.21 deleterious(0.01) probably_damaging(1) TCGA-22-4613-01 X 18264872 18264872 T A SCML2 Silent p.L549L 0.22 TCGA-22-4613-01 X 23398156 23398156 T A PTCHD1 Missense_Mutation p.V267E 0.23 deleterious(0.01) possibly_damaging(0.767) TCGA-22-4613-01 X 24625900 24625900 G A PCYT1B Missense_Mutation p.A99V 0.29 deleterious(0.03) possibly_damaging(0.766) TCGA-22-4613-01 X 30872797 30872797 G T TAB3 Missense_Mutation p.P329T 0.16 tolerated(0.06) benign(0.001) TCGA-22-4613-01 X 31525435 31525435 T A DMD Nonsense_Mutation p.K2785* 0.29 TCGA-22-4613-01 X 35937903 35937903 C G CXorf22 5'UTR 0.29 TCGA-22-4613-01 X 37312654 37312654 C G PRRG1 Missense_Mutation p.P146R 0.17 deleterious(0.02) probably_damaging(0.974) TCGA-22-4613-01 X 40506428 40506428 G T CXorf38 Intron 0.34 TCGA-22-4613-01 X 46510819 46510819 A G SLC9A7 Missense_Mutation p.C389R 0.08 deleterious(0) probably_damaging(0.997) TCGA-22-4613-01 X 46917713 46917713 G T JADE3 Missense_Mutation p.S569I 0.12 deleterious_low_confidence(0) benign(0.229) TCGA-22-4613-01 X 47100995 47100995 A T USP11 Missense_Mutation p.Q402L 0.06 deleterious(0) probably_damaging(0.983) TCGA-22-4613-01 X 49029582 49029582 T G PLP2 Missense_Mutation p.M68R 0.09 deleterious(0) possibly_damaging(0.702) TCGA-22-4613-01 X 50089751 50089751 T A CCNB3 Missense_Mutation p.L1252H 0.11 deleterious(0) probably_damaging(1) TCGA-22-4613-01 X 51487832 51487832 G T GSPT2 Silent p.L370L 0.33 TCGA-22-4613-01 X 52825621 52825621 C A SPANXN5 Missense_Mutation p.K42N 0.19 tolerated(0.06) benign(0.05) TCGA-22-4613-01 X 52895512 52895512 G A XAGE3 Missense_Mutation p.P46L 0.24 tolerated(0.62) benign(0.258) TCGA-22-4613-01 X 53105956 53105956 T C GPR173 Silent p.R51R 0.13 TCGA-22-4613-01 X 55028746 55028746 C A APEX2 Missense_Mutation p.L102M 0.20 tolerated(0.05) possibly_damaging(0.595) TCGA-22-4613-01 X 6069541 6069541 C A NLGN4X 5'UTR 0.21 TCGA-22-4613-01 X 6069542 6069542 A G NLGN4X 5'UTR 0.21 TCGA-22-4613-01 X 64137744 64137744 C A ZC4H2 Silent p.R198R 0.34 TCGA-22-4613-01 X 64738216 64738216 C A LAS1L Silent p.G526G 0.19 TCGA-22-4613-01 X 65259847 65259847 C T VSIG4 5'UTR 0.28 TCGA-22-4613-01 X 65412096 65412096 G T HEPH Missense_Mutation p.M450I 0.18 tolerated(0.06) benign(0.001) TCGA-22-4613-01 X 69502122 69502122 G A RAB41 Missense_Mutation p.E19K 0.35 tolerated(0.96) benign(0.005) TCGA-22-4613-01 X 69942543 69942543 A T TEX11 Missense_Mutation p.V325D 0.16 deleterious(0) possibly_damaging(0.828) TCGA-22-4613-01 X 70323874 70323874 C A CXorf65 Missense_Mutation p.G172V 0.16 tolerated_low_confidence(0.29) benign(0.059) TCGA-22-4613-01 X 70511814 70511814 A C NONO Missense_Mutation p.I114L 0.17 tolerated(0.12) benign(0.116) TCGA-22-4613-01 X 70597477 70597477 G T TAF1 Nonsense_Mutation p.G267* 0.17 TCGA-22-4613-01 X 71426086 71426086 T C ERCC6L Missense_Mutation p.Q844R 0.39 tolerated(0.12) benign(0.118) TCGA-22-4613-01 X 7223186 7223186 A G STS Missense_Mutation p.K353R 0.25 tolerated(0.44) benign(0.005) TCGA-22-4613-01 X 76919046 76919046 T C ATRX Silent p.E1315E 0.24 TCGA-22-4613-01 X 77224359 77224359 C G PGAM4 3'UTR 0.24 TCGA-22-4613-01 X 79974986 79974986 A T BRWD3 Splice_Site p.X682_splice 0.18 TCGA-22-4613-01 X 84510642 84510642 G A ZNF711 Missense_Mutation p.D153N 0.12 tolerated(0.14) possibly_damaging(0.65) TCGA-22-4613-01 X 85302529 85302529 T G CHM Missense_Mutation p.D3A 0.26 deleterious(0) benign(0.025) TCGA-22-4613-01 X 85906066 85906066 C A DACH2 Missense_Mutation p.A223E 0.34 deleterious(0) probably_damaging(0.988) TCGA-22-4613-01 X 86888805 86888805 T A KLHL4 Missense_Mutation p.Y536N 0.36 tolerated(0.07) probably_damaging(0.991) TCGA-22-4613-01 X 89177752 89177752 C A TGIF2LX Missense_Mutation p.A223E 0.38 deleterious(0.02) benign(0.245) TCGA-22-4613-01 X 91090873 91090873 A G PCDH11X Missense_Mutation p.K124E 0.22 tolerated(0.63) probably_damaging(0.965) TCGA-22-4613-01 X 91873434 91873434 C A PCDH11X Missense_Mutation p.A1180D 0.37 tolerated_low_confidence(0.37) benign(0.037) TCGA-22-4613-01 X 91873655 91873655 G C PCDH11X Missense_Mutation p.A1254P 0.11 deleterious_low_confidence(0.02) benign(0.002) TCGA-22-4613-01 X 92926883 92926884 - A NAP1L3 Frame_Shift_Ins p.D474Vfs*2 0.27 TCGA-22-5471-01 10 106209899 106209899 C A CCDC147 Missense_Mutation p.T816N 0.16 tolerated(0.29) benign(0.002) TCGA-22-5471-01 10 106918650 106918650 C A SORCS3 Missense_Mutation p.P544T 0.24 deleterious(0) probably_damaging(0.999) TCGA-22-5471-01 10 120514170 120514170 G A CACUL1 Silent p.P35P 0.35 TCGA-22-5471-01 10 121347733 121347733 C A TIAL1 Silent p.V20V 0.38 TCGA-22-5471-01 10 124390692 124390692 G A DMBT1 Missense_Mutation p.D1952N 0.31 tolerated(0.42) benign(0.279) TCGA-22-5471-01 10 28229604 28229604 T A ARMC4 Missense_Mutation p.K625I 0.48 deleterious(0) probably_damaging(0.997) TCGA-22-5471-01 10 30625753 30625753 G T MTPAP Silent p.T253T 0.14 TCGA-22-5471-01 10 38120707 38120707 C A ZNF248 Missense_Mutation p.G526W 0.30 deleterious(0) probably_damaging(0.997) TCGA-22-5471-01 10 46914632 46914632 G A RP11-38L15.8 RNA 0.07 TCGA-22-5471-01 10 50227650 50227650 A C VSTM4 3'UTR 0.08 TCGA-22-5471-01 10 68687494 68687494 T A LRRTM3 Missense_Mutation p.F274I 0.44 deleterious(0) probably_damaging(0.995) TCGA-22-5471-01 10 71899765 71899765 C T TYSND1 Missense_Mutation p.R539H 0.07 tolerated(0.11) benign(0.011) TCGA-22-5471-01 10 75279616 75279616 G A USP54 Nonsense_Mutation p.Q873* 0.53 TCGA-22-5471-01 10 81058301 81058301 A G ZMIZ1 Missense_Mutation p.I544V 0.40 benign(0.031) TCGA-22-5471-01 10 8115917 8115917 G T GATA3 Silent p.P422P 0.35 TCGA-22-5471-01 10 91099423 91099423 G A IFIT3 Silent p.E337E 0.37 TCGA-22-5471-01 10 98819234 98819234 G A SLIT1 Silent p.L356L 0.19 TCGA-22-5471-01 11 113266902 113266902 C T ANKK1 Missense_Mutation p.R266C 0.14 tolerated(0.06) benign(0.02) TCGA-22-5471-01 11 121986551 121986551 C T BLID Missense_Mutation p.G27E 0.39 tolerated_low_confidence(0.62) probably_damaging(0.988) TCGA-22-5471-01 11 124626148 124626148 C A ESAM Missense_Mutation p.D188Y 0.33 deleterious(0.01) benign(0.433) TCGA-22-5471-01 11 309189 309189 G A IFITM2 3'UTR 0.50 TCGA-22-5471-01 11 3794901 3794901 A G NUP98 Silent p.C188C 0.24 TCGA-22-5471-01 11 44286627 44286627 G A ALX4 Missense_Mutation p.P338L 0.48 deleterious(0.02) probably_damaging(0.994) TCGA-22-5471-01 11 48328546 48328546 C T OR4S1 Missense_Mutation p.R258C 0.44 deleterious(0) probably_damaging(0.999) TCGA-22-5471-01 11 55861449 55861449 A T OR8I2 Silent p.S222S 0.45 TCGA-22-5471-01 11 56057959 56057959 T A OR8H1 Missense_Mutation p.I194F 0.14 tolerated(0.54) benign(0.03) TCGA-22-5471-01 11 5799050 5799050 C T OR52N5 Missense_Mutation p.R272H 0.50 deleterious(0.05) benign(0.127) TCGA-22-5471-01 11 59814493 59814493 C G OOSP2 Missense_Mutation p.Q142E 0.05 tolerated(1) benign(0) TCGA-22-5471-01 11 61081072 61081072 G T DDB1 Silent p.P656P 0.18 TCGA-22-5471-01 11 66330314 66330314 A T CTSF 3'Flank 0.12 TCGA-22-5471-01 11 68696686 68696686 G T IGHMBP2 Nonsense_Mutation p.E366* 0.35 TCGA-22-5471-01 11 6942355 6942355 C A OR2D3 Silent p.I41I 0.36 TCGA-22-5471-01 11 78381535 78381535 C A TENM4 Missense_Mutation p.R1952L 0.25 deleterious(0.03) benign(0.167) TCGA-22-5471-01 11 7847314 7847314 A G OR5P3 Missense_Mutation p.V69A 0.06 tolerated(0.41) benign(0.12) TCGA-22-5471-01 11 92714750 92714750 G T MTNR1B Missense_Mutation p.G121C 0.24 deleterious(0) probably_damaging(0.998) TCGA-22-5471-01 12 100378031 100378031 C - ANKS1B 5'Flank 0.39 TCGA-22-5471-01 12 108917128 108917128 G A SART3 3'UTR 0.24 TCGA-22-5471-01 12 10962127 10962127 A T TAS2R9 Missense_Mutation p.L183Q 0.65 deleterious(0) possibly_damaging(0.874) TCGA-22-5471-01 12 124335548 124335548 T A DNAH10 Silent p.P1954P 0.05 TCGA-22-5471-01 12 12940477 12940477 T C APOLD1 Missense_Mutation p.L244P 0.65 deleterious(0) probably_damaging(0.997) TCGA-22-5471-01 12 54383205 54383205 T C HOXC10 Missense_Mutation p.L335P 0.33 deleterious(0) benign(0.361) TCGA-22-5471-01 12 57115156 57115156 G A NACA Missense_Mutation p.P53L 0.30 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-22-5471-01 12 57663634 57663634 C T R3HDM2 Silent p.T482T 0.37 TCGA-22-5471-01 12 57864776 57864776 G T GLI1 Silent p.L751L 0.44 TCGA-22-5471-01 12 65461562 65461562 G T WIF1 Missense_Mutation p.P183T 0.44 tolerated(0.47) benign(0.012) TCGA-22-5471-01 12 65461563 65461563 G T WIF1 Nonsense_Mutation p.C182* 0.45 TCGA-22-5471-01 12 78400650 78400650 T A NAV3 Silent p.P444P 0.23 TCGA-22-5471-01 12 85255392 85255392 C A SLC6A15 3'UTR 0.28 TCGA-22-5471-01 12 85450481 85450481 C A LRRIQ1 Nonsense_Mutation p.S637* 0.34 TCGA-22-5471-01 12 91498030 91498030 C A LUM Missense_Mutation p.R310L 0.18 deleterious(0) probably_damaging(1) TCGA-22-5471-01 12 94618035 94618035 C T PLXNC1 Silent p.F578F 0.10 TCGA-22-5471-01 12 9885563 9885563 A C CLECL1 Missense_Mutation p.F100V 0.15 tolerated(0.3) benign(0.003) TCGA-22-5471-01 13 113530243 113530244 AG - ATP11A Frame_Shift_Del p.R1107Sfs*4 0.19 TCGA-22-5471-01 13 20012252 20012252 C T TPTE2 Missense_Mutation p.E339K 0.50 tolerated(0.17) benign(0.059) TCGA-22-5471-01 13 36909772 36909772 G C SPG20 Missense_Mutation p.H66D 0.48 tolerated(0.53) benign(0.282) TCGA-22-5471-01 13 88329160 88329160 A T SLITRK5 Missense_Mutation p.N506I 0.35 deleterious(0) probably_damaging(0.998) TCGA-22-5471-01 13 95273375 95273375 G C GPR180 Missense_Mutation p.L260F 0.09 deleterious(0) probably_damaging(0.999) TCGA-22-5471-01 14 23342530 23342530 C T LRP10 Silent p.D30D 0.21 TCGA-22-5471-01 14 26917512 26917512 C A NOVA1 Missense_Mutation p.A393S 0.14 tolerated(0.56) benign(0.092) TCGA-22-5471-01 14 44975233 44975233 G A FSCB Missense_Mutation p.P320S 0.22 tolerated(0.3) benign(0.05) TCGA-22-5471-01 14 50044313 50044313 T C RPS29 3'UTR 0.31 TCGA-22-5471-01 14 50044494 50044494 G A RPS29 3'UTR 0.35 TCGA-22-5471-01 14 56139935 56139935 T C KTN1 Missense_Mutation p.Y1245H 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-22-5471-01 14 95081224 95081224 T A SERPINA3 Missense_Mutation p.L149Q 0.23 deleterious(0.01) probably_damaging(0.982) TCGA-22-5471-01 15 25223391 25223391 G T SNRPN Missense_Mutation p.G204V 0.18 deleterious(0) unknown(0) TCGA-22-5471-01 15 34643014 34643015 TT - NUTM1 Frame_Shift_Del p.F279Lfs*2 0.28 TCGA-22-5471-01 15 42644329 42644329 A T GANC Missense_Mutation p.I913F 0.17 possibly_damaging(0.739) TCGA-22-5471-01 15 51839432 51839432 C A DMXL2 Missense_Mutation p.M247I 0.13 deleterious(0) probably_damaging(0.986) TCGA-22-5471-01 15 54025310 54025310 G C WDR72 Missense_Mutation p.Q13E 0.20 deleterious(0.03) benign(0.007) TCGA-22-5471-01 15 55669237 55669237 C T CCPG1 Missense_Mutation p.V122I 0.18 tolerated(0.47) benign(0.062) TCGA-22-5471-01 15 86123578 86123578 C T AKAP13 Missense_Mutation p.S760L 0.11 tolerated_low_confidence(0.27) benign(0.006) TCGA-22-5471-01 16 19501870 19501870 C T TMC5 Silent p.F909F 0.04 TCGA-22-5471-01 16 20693760 20693760 G A ACSM1 Silent p.I143I 0.30 TCGA-22-5471-01 16 21011702 21011702 G T DNAH3 Missense_Mutation p.L2089I 0.29 tolerated(0.13) benign(0.012) TCGA-22-5471-01 16 2129556 2129556 A T TSC2 Splice_Site p.X1095_splice 0.50 TCGA-22-5471-01 16 457540 457540 G A DECR2 Missense_Mutation p.R106K 0.20 tolerated(0.68) benign(0.005) TCGA-22-5471-01 16 48149466 48149466 C T ABCC12 Missense_Mutation p.V617I 0.15 tolerated(0.1) benign(0.043) TCGA-22-5471-01 16 56670825 56670825 G C MT1M 3'Flank 0.29 TCGA-22-5471-01 16 61823381 61823381 G T CDH8 Missense_Mutation p.S428Y 0.29 tolerated(0.07) benign(0.435) TCGA-22-5471-01 16 68404963 68404963 C T SMPD3 Silent p.L374L 0.23 TCGA-22-5471-01 16 71220757 71220757 C G HYDIN Missense_Mutation p.Q14H 0.12 benign(0.028) TCGA-22-5471-01 16 71713410 71713410 A T PHLPP2 Missense_Mutation p.S307T 0.10 deleterious(0.03) benign(0.113) TCGA-22-5471-01 17 15516031 15516031 C T RP11-385D13.1 Nonsense_Mutation p.W679* 0.14 TCGA-22-5471-01 17 21826125 21826125 T G FAM27L RNA 0.41 TCGA-22-5471-01 17 29486068 29486068 C G NF1 Missense_Mutation p.S82C 0.07 deleterious(0) probably_damaging(0.974) TCGA-22-5471-01 17 30519306 30519306 C A RHOT1 Silent p.L209L 0.12 TCGA-22-5471-01 17 3195412 3195412 A G OR3A1 Silent p.A155A 0.18 TCGA-22-5471-01 17 37947744 37947744 G A IKZF3 Missense_Mutation p.P173S 0.15 deleterious(0) probably_damaging(1) TCGA-22-5471-01 17 39190888 39190888 C A KRTAP1-3 Missense_Mutation p.Q62H 0.22 deleterious(0.02) unknown(0) TCGA-22-5471-01 17 40318470 40318470 C A KCNH4 Missense_Mutation p.R562M 0.17 deleterious(0) benign(0.162) TCGA-22-5471-01 17 46804097 46804097 T A HOXB13 3'UTR 0.25 TCGA-22-5471-01 17 48631635 48631635 G A SPATA20 Missense_Mutation p.A661T 0.09 deleterious(0.01) benign(0.287) TCGA-22-5471-01 17 5035697 5035697 G A USP6 Silent p.T54T 0.19 TCGA-22-5471-01 17 56435050 56435050 G A RNF43 Missense_Mutation p.A696V 0.26 tolerated_low_confidence(0.86) benign(0.005) TCGA-22-5471-01 17 59112076 59112076 G T BCAS3 Nonsense_Mutation p.E578* 0.33 TCGA-22-5471-01 17 61607532 61607532 G A KCNH6 Missense_Mutation p.E130K 0.39 tolerated(0.3) benign(0.317) TCGA-22-5471-01 17 61838333 61838333 T A CCDC47 Nonsense_Mutation p.K226* 0.18 TCGA-22-5471-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.67 deleterious(0) probably_damaging(1) TCGA-22-5471-01 17 7696114 7696114 G C DNAH2 Missense_Mutation p.V2429L 0.26 benign(0.397) TCGA-22-5471-01 17 80044224 80044224 G A FASN Missense_Mutation p.P1213L 0.36 tolerated(0.21) benign(0.004) TCGA-22-5471-01 18 24035721 24035721 C T KCTD1 Missense_Mutation p.E254K 0.61 deleterious_low_confidence(0) possibly_damaging(0.805) TCGA-22-5471-01 18 31803282 31803282 C T NOL4 5'UTR 0.07 TCGA-22-5471-01 18 32844391 32844391 C T ZSCAN30 5'UTR 0.11 TCGA-22-5471-01 18 55020255 55020255 C A ST8SIA3 Silent p.R60R 0.15 TCGA-22-5471-01 18 70417720 70417720 A T NETO1 Missense_Mutation p.V373D 0.16 deleterious(0) possibly_damaging(0.835) TCGA-22-5471-01 19 10476261 10476261 C T TYK2 Missense_Mutation p.E315K 0.09 deleterious(0) probably_damaging(0.91) TCGA-22-5471-01 19 10822892 10822892 G A QTRT1 Silent p.E234E 0.25 TCGA-22-5471-01 19 11172518 11172518 G A SMARCA4 3'UTR 0.13 TCGA-22-5471-01 19 12813658 12813658 T C TNPO2 Missense_Mutation p.K762E 0.26 deleterious(0) possibly_damaging(0.848) TCGA-22-5471-01 19 13136140 13136140 G A NFIX Silent p.K111K 0.44 TCGA-22-5471-01 19 14263176 14263176 G A LPHN1 Silent p.L1203L 0.11 TCGA-22-5471-01 19 15303038 15303038 G T NOTCH3 Missense_Mutation p.P138T 0.30 tolerated(0.46) benign(0.002) TCGA-22-5471-01 19 15806997 15806997 G - CYP4F12 Frame_Shift_Del p.V427Sfs*52 0.27 TCGA-22-5471-01 19 17691562 17691562 C T COLGALT1 Silent p.R483R 0.42 TCGA-22-5471-01 19 17692173 17692173 C T COLGALT1 Nonsense_Mutation p.Q597* 0.29 TCGA-22-5471-01 19 33592443 33592443 G A GPATCH1 Missense_Mutation p.G348E 0.11 deleterious(0) probably_damaging(0.948) TCGA-22-5471-01 19 36333109 36333109 G A NPHS1 Silent p.T860T 0.38 TCGA-22-5471-01 19 37644505 37644505 T A ZNF585A Missense_Mutation p.E44V 0.10 deleterious(0) possibly_damaging(0.776) TCGA-22-5471-01 19 41597756 41597756 G T CYP2A13 Silent p.T258T 0.59 TCGA-22-5471-01 19 4292563 4292563 G - TMIGD2 3'UTR 0.24 TCGA-22-5471-01 19 44981071 44981071 G C ZNF180 Missense_Mutation p.H543D 0.06 deleterious(0) probably_damaging(0.999) TCGA-22-5471-01 19 58189579 58189579 C A ZSCAN4 Missense_Mutation p.T203N 0.08 tolerated(0.35) benign(0.02) TCGA-22-5471-01 19 814740 814740 G T LPPR3 Missense_Mutation p.F203L 0.60 deleterious(0) probably_damaging(0.943) TCGA-22-5471-01 1 103444262 103444262 A G COL11A1 Splice_Site p.X918_splice 0.19 TCGA-22-5471-01 1 110280086 110280086 C A GSTM3 Missense_Mutation p.R191L 0.25 deleterious(0) probably_damaging(0.965) TCGA-22-5471-01 1 111964252 111964252 T G OVGP1 Missense_Mutation p.S218R 0.11 deleterious(0) probably_damaging(0.998) TCGA-22-5471-01 1 116670900 116670900 C T MAB21L3 Silent p.H265H 0.44 TCGA-22-5471-01 1 118640417 118640417 C T SPAG17 Nonsense_Mutation p.W296* 0.15 TCGA-22-5471-01 1 146465947 146465947 G A NBPF12 Silent p.S3274S 0.22 TCGA-22-5471-01 1 148004707 148004707 G A NBPF14 Silent p.Y875Y 0.33 TCGA-22-5471-01 1 155180357 155180357 G A MTX1 Missense_Mutation p.R206Q 0.10 tolerated(0.05) benign(0.192) TCGA-22-5471-01 1 156513993 156513993 C T IQGAP3 Nonsense_Mutation p.W804* 0.07 TCGA-22-5471-01 1 158614075 158614075 G T SPTA1 Silent p.R1436R 0.28 TCGA-22-5471-01 1 158725206 158725206 C A OR6K6 Missense_Mutation p.Q201K 0.42 tolerated(0.18) benign(0.013) TCGA-22-5471-01 1 169580755 169580755 C T SELP Nonsense_Mutation p.W374* 0.07 TCGA-22-5471-01 1 17298869 17298869 G T CROCC Missense_Mutation p.K1994N 0.28 unknown(0) TCGA-22-5471-01 1 198668783 198668783 C A PTPRC Missense_Mutation p.S130Y 0.04 deleterious(0.02) benign(0.17) TCGA-22-5471-01 1 248486943 248486943 A G OR2M7 Missense_Mutation p.S310P 0.12 deleterious(0.05) benign(0.008) TCGA-22-5471-01 1 248569754 248569754 C G OR2T1 Silent p.L153L 0.35 TCGA-22-5471-01 1 2938330 2938330 G T ACTRT2 Missense_Mutation p.G27V 0.13 deleterious(0) probably_damaging(0.993) TCGA-22-5471-01 1 3527813 3527813 G T MEGF6 Missense_Mutation p.A7E 0.50 tolerated_low_confidence(0.05) possibly_damaging(0.726) TCGA-22-5471-01 1 35334339 35334339 G T DLGAP3 Missense_Mutation p.D784E 0.15 tolerated(0.64) possibly_damaging(0.815) TCGA-22-5471-01 1 38227319 38227319 G T EPHA10 Nonsense_Mutation p.S203* 0.32 TCGA-22-5471-01 1 57422559 57422559 G A C8B Missense_Mutation p.P92S 0.24 deleterious(0) probably_damaging(0.99) TCGA-22-5471-01 1 62190775 62190775 C A TM2D1 Silent p.P68P 0.16 TCGA-22-5471-01 1 62228831 62228831 A G INADL Missense_Mutation p.I57V 0.22 tolerated(0.17) possibly_damaging(0.812) TCGA-22-5471-01 1 94497571 94497571 G A ABCA4 Silent p.V1297V 0.06 TCGA-22-5471-01 20 35177629 35177629 G T MYL9 Missense_Mutation p.G166C 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-22-5471-01 20 42355044 42355044 G T GTSF1L Nonsense_Mutation p.C97* 0.25 TCGA-22-5471-01 20 58381249 58381249 A C PHACTR3 Missense_Mutation p.K443T 0.33 deleterious(0) probably_damaging(0.968) TCGA-22-5471-01 21 31986059 31986059 G A KRTAP6-1 Silent p.S55S 0.43 TCGA-22-5471-01 22 17662232 17662232 A T CECR1 3'UTR 0.30 TCGA-22-5471-01 22 21363259 21363259 C T AC002472.1 5'Flank 0.06 TCGA-22-5471-01 22 22735461 22735461 C T IGLV1-44 Missense_Mutation p.P33L 0.46 deleterious_low_confidence(0) benign(0.005) TCGA-22-5471-01 22 31289716 31289716 G A OSBP2 Missense_Mutation p.R729Q 0.44 deleterious(0) probably_damaging(0.995) TCGA-22-5471-01 2 103090333 103090333 C A SLC9A4 Missense_Mutation p.Q39K 0.52 tolerated(0.47) benign(0.024) TCGA-22-5471-01 2 105896848 105896848 T G TGFBRAP1 Missense_Mutation p.K485T 0.32 deleterious(0) probably_damaging(0.985) TCGA-22-5471-01 2 112945056 112945056 C A FBLN7 Silent p.T431T 0.39 TCGA-22-5471-01 2 12864803 12864803 G C TRIB2 Intron 0.10 TCGA-22-5471-01 2 137852605 137852605 G T THSD7B Missense_Mutation p.M371I 0.38 tolerated(0.7) benign(0.013) TCGA-22-5471-01 2 141260630 141260630 C A LRP1B Missense_Mutation p.G2855V 0.08 probably_damaging(0.988) TCGA-22-5471-01 2 141819680 141819680 G T LRP1B Missense_Mutation p.D392E 0.06 possibly_damaging(0.739) TCGA-22-5471-01 2 178936383 178936383 T C PDE11A Missense_Mutation p.H261R 0.44 tolerated(0.09) probably_damaging(0.954) TCGA-22-5471-01 2 179585310 179585310 C A TTN Nonsense_Mutation p.G7727* 0.12 TCGA-22-5471-01 2 179590103 179590103 A G TTN Missense_Mutation p.M6943T 0.44 TCGA-22-5471-01 2 183960325 183960325 G A DUSP19 Missense_Mutation p.R198H 0.06 tolerated(0.24) benign(0.022) TCGA-22-5471-01 2 185802120 185802120 C A ZNF804A Missense_Mutation p.S666Y 0.10 tolerated(1) benign(0) TCGA-22-5471-01 2 189348175 189348175 A G GULP1 Missense_Mutation p.T16A 0.49 tolerated(0.31) benign(0.008) TCGA-22-5471-01 2 190922267 190922267 C T MSTN Missense_Mutation p.C282Y 0.41 deleterious(0) probably_damaging(1) TCGA-22-5471-01 2 196581432 196581432 G C SLC39A10 Missense_Mutation p.E590Q 0.11 tolerated(0.3) benign(0.077) TCGA-22-5471-01 2 196741285 196741285 G A DNAH7 Missense_Mutation p.P2034S 0.05 deleterious(0.03) probably_damaging(0.982) TCGA-22-5471-01 2 200137131 200137131 G A SATB2 Missense_Mutation p.H669Y 0.08 tolerated(1) benign(0.017) TCGA-22-5471-01 2 200137256 200137256 C G SATB2 Missense_Mutation p.G627A 0.15 tolerated(0.06) possibly_damaging(0.597) TCGA-22-5471-01 2 201499549 201499549 A G AOX1 Missense_Mutation p.M753V 0.38 deleterious(0.01) possibly_damaging(0.824) TCGA-22-5471-01 2 219000268 219000268 G A CXCR2 Silent p.R248R 0.25 TCGA-22-5471-01 2 29294605 29294605 T C C2orf71 Silent p.K841K 0.05 TCGA-22-5471-01 2 31637489 31637489 A T XDH Splice_Site p.X14_splice 0.53 TCGA-22-5471-01 2 48808585 48808585 G T STON1-GTF2A1L Missense_Mutation p.Q271H 0.20 deleterious(0) probably_damaging(0.997) TCGA-22-5471-01 2 48915599 48915599 G T LHCGR Missense_Mutation p.T446N 0.06 deleterious(0) probably_damaging(0.989) TCGA-22-5471-01 2 49195948 49195948 G T FSHR Nonsense_Mutation p.S248* 0.45 TCGA-22-5471-01 2 74597857 74597857 C T DCTN1 Missense_Mutation p.M313I 0.09 deleterious(0) probably_damaging(0.989) TCGA-22-5471-01 2 79254172 79254172 A T REG3G Nonsense_Mutation p.K70* 0.45 TCGA-22-5471-01 3 111325605 111325605 C T CD96 Silent p.T398T 0.29 TCGA-22-5471-01 3 115395178 115395178 G A GAP43 Missense_Mutation p.D153N 0.26 tolerated(0.19) benign(0.239) TCGA-22-5471-01 3 123367818 123367818 G T MYLK Missense_Mutation p.S1472Y 0.14 deleterious(0) possibly_damaging(0.628) TCGA-22-5471-01 3 148558658 148558658 T C CPB1 Intron 0.14 TCGA-22-5471-01 3 155838411 155838411 C G KCNAB1 Missense_Mutation p.A4G 0.09 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-22-5471-01 3 157081471 157081471 T C VEPH1 Missense_Mutation p.I473V 0.10 tolerated(1) benign(0) TCGA-22-5471-01 3 158261214 158261214 G A RSRC1 Missense_Mutation p.D284N 0.10 tolerated_low_confidence(0.32) possibly_damaging(0.846) TCGA-22-5471-01 3 158261220 158261220 A C RSRC1 Missense_Mutation p.T286P 0.10 tolerated_low_confidence(0.11) possibly_damaging(0.61) TCGA-22-5471-01 3 160248717 160248717 T A KPNA4 Missense_Mutation p.Q132L 0.11 deleterious(0) probably_damaging(0.995) TCGA-22-5471-01 3 164907779 164907779 G A SLITRK3 Silent p.L280L 0.23 TCGA-22-5471-01 3 169820624 169820624 G A PHC3 Missense_Mutation p.P856L 0.14 tolerated(0.25) benign(0.046) TCGA-22-5471-01 3 175165048 175165048 C T NAALADL2 Silent p.L374L 0.09 TCGA-22-5471-01 3 21706457 21706457 G T ZNF385D Missense_Mutation p.P29Q 0.43 deleterious(0) possibly_damaging(0.502) TCGA-22-5471-01 3 36898726 36898726 G A TRANK1 Silent p.F785F 0.18 TCGA-22-5471-01 3 39230454 39230454 C G XIRP1 Missense_Mutation p.E161D 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-22-5471-01 3 40353520 40353520 C T EIF1B 3'UTR 0.39 TCGA-22-5471-01 3 51897420 51897420 C T IQCF2 3'UTR 0.62 TCGA-22-5471-01 3 97983260 97983260 C T OR5H6 Silent p.F44F 0.17 TCGA-22-5471-01 4 100235165 100235165 G T ADH1B Missense_Mutation p.A214E 0.16 tolerated(0.05) benign(0.135) TCGA-22-5471-01 4 107230062 107230062 A C TBCK Missense_Mutation p.L19R 0.12 tolerated(0.23) benign(0.373) TCGA-22-5471-01 4 123305122 123305122 G C ADAD1 Splice_Site p.X177_splice 0.27 TCGA-22-5471-01 4 156629398 156629398 G A GUCY1A3 Missense_Mutation p.E110K 0.11 tolerated(0.13) benign(0.013) TCGA-22-5471-01 4 17585116 17585116 G T LAP3 Missense_Mutation p.R130S 0.26 tolerated(0.07) benign(0.341) TCGA-22-5471-01 4 177071097 177071097 T A WDR17 Silent p.I703I 0.30 TCGA-22-5471-01 4 177098642 177098642 A C WDR17 Missense_Mutation p.Y1229S 0.11 tolerated(0.38) benign(0.001) TCGA-22-5471-01 4 186544316 186544316 G T SORBS2 Missense_Mutation p.P852Q 0.15 deleterious(0) probably_damaging(1) TCGA-22-5471-01 4 187192828 187192828 C T F11 Missense_Mutation p.P41S 0.41 deleterious(0) probably_damaging(1) TCGA-22-5471-01 4 188924097 188924097 G T ZFP42 Missense_Mutation p.V46L 0.31 tolerated(0.13) benign(0.002) TCGA-22-5471-01 4 23803907 23803907 C A PPARGC1A Missense_Mutation p.R694M 0.27 tolerated(0.08) unknown(0) TCGA-22-5471-01 4 46053442 46053442 G T GABRG1 Nonsense_Mutation p.S377* 0.28 TCGA-22-5471-01 4 56734579 56734579 G T EXOC1 Missense_Mutation p.A165S 0.33 tolerated(0.64) benign(0.018) TCGA-22-5471-01 4 71555719 71555719 G A UTP3 Missense_Mutation p.R442K 0.23 tolerated(0.41) benign(0.012) TCGA-22-5471-01 4 72263358 72263358 G C SLC4A4 Silent p.P265P 0.17 TCGA-22-5471-01 5 11117570 11117570 C G CTNND2 Missense_Mutation p.D757H 0.37 deleterious(0) probably_damaging(0.986) TCGA-22-5471-01 5 113831627 113831627 A G KCNN2 Silent p.L496L 0.20 TCGA-22-5471-01 5 140475273 140475273 C A PCDHB2 Nonsense_Mutation p.S300* 0.08 TCGA-22-5471-01 5 140502076 140502076 C G PCDHB4 Missense_Mutation p.L166V 0.24 tolerated_low_confidence(0.71) benign(0.037) TCGA-22-5471-01 5 14389424 14389424 C A TRIO Silent p.G1325G 0.19 TCGA-22-5471-01 5 156021964 156021964 T C SGCD Silent p.Y135Y 0.19 TCGA-22-5471-01 5 161322698 161322698 A T GABRA1 Missense_Mutation p.T295S 0.17 deleterious(0.03) probably_damaging(0.983) TCGA-22-5471-01 5 23527031 23527031 G A PRDM9 Missense_Mutation p.E612K 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-22-5471-01 5 40937697 40937697 A T C7 Missense_Mutation p.T158S 0.23 deleterious(0.03) benign(0.356) TCGA-22-5471-01 5 5186183 5186183 A G ADAMTS16 Missense_Mutation p.K261R 0.17 tolerated(0.48) benign(0.001) TCGA-22-5471-01 5 64447610 64447610 T C ADAMTS6 3'UTR 0.33 TCGA-22-5471-01 5 82816665 82816665 C A VCAN Missense_Mutation p.T847N 0.24 deleterious(0.01) probably_damaging(0.968) TCGA-22-5471-01 5 96075820 96075820 G T CAST Missense_Mutation p.A252S 0.23 tolerated(0.73) benign(0.358) TCGA-22-5471-01 6 100838775 100838775 G A SIM1 Missense_Mutation p.P588L 0.16 tolerated_low_confidence(0.31) benign(0.003) TCGA-22-5471-01 6 102124644 102124644 T G GRIK2 Missense_Mutation p.C230G 0.30 deleterious(0) probably_damaging(1) TCGA-22-5471-01 6 117662333 117662333 C A ROS1 Missense_Mutation p.V1682F 0.08 tolerated(0.07) possibly_damaging(0.908) TCGA-22-5471-01 6 117896684 117896684 G A GOPC Intron 0.22 TCGA-22-5471-01 6 123545265 123545265 C G TRDN Missense_Mutation p.D663H 0.28 deleterious_low_confidence(0) possibly_damaging(0.667) TCGA-22-5471-01 6 132004193 132004193 G C ENPP3 Splice_Site p.X338_splice 0.24 TCGA-22-5471-01 6 133703559 133703559 T A EYA4 Silent p.V21V 0.25 TCGA-22-5471-01 6 134495154 134495154 G A SGK1 Missense_Mutation p.P168S 0.22 tolerated(0.57) benign(0.006) TCGA-22-5471-01 6 144768371 144768371 G T UTRN Nonsense_Mutation p.E547* 0.18 TCGA-22-5471-01 6 152673328 152673328 C A SYNE1 Missense_Mutation p.R3805L 0.22 probably_damaging(0.998) TCGA-22-5471-01 6 155485735 155485735 G T TIAM2 Splice_Site p.X738_splice 0.21 TCGA-22-5471-01 6 26273498 26273498 G C HIST1H2BI Missense_Mutation p.V99L 0.19 tolerated_low_confidence(0.05) benign(0.041) TCGA-22-5471-01 6 27861243 27861243 G T HIST1H2BO Translation_Start_Site p.M1? 0.11 deleterious_low_confidence(0.03) unknown(0) TCGA-22-5471-01 6 27861400 27861400 G T HIST1H2BO Missense_Mutation p.G54C 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-22-5471-01 6 28214766 28214766 A T ZKSCAN4 Missense_Mutation p.H253Q 0.39 tolerated(0.27) benign(0.295) TCGA-22-5471-01 6 29054686 29054686 G A OR2B3 Missense_Mutation p.L114F 0.17 deleterious(0.02) possibly_damaging(0.847) TCGA-22-5471-01 6 29364805 29364805 C G OR12D2 Missense_Mutation p.S110C 0.39 tolerated(0.58) benign(0.001) TCGA-22-5471-01 6 30553957 30553957 G T ABCF1 Missense_Mutation p.R587L 0.11 deleterious(0.02) possibly_damaging(0.474) TCGA-22-5471-01 6 31691568 31691568 C T C6orf25 Missense_Mutation p.P72S 0.21 deleterious_low_confidence(0.04) probably_damaging(1) TCGA-22-5471-01 6 42930890 42930890 C T GNMT Missense_Mutation p.R178C 0.15 deleterious(0) probably_damaging(1) TCGA-22-5471-01 6 62604627 62604627 A G KHDRBS2 Silent p.G241G 0.15 TCGA-22-5471-01 6 75865550 75865550 T C COL12A1 Missense_Mutation p.R1091G 0.40 probably_damaging(0.933) TCGA-22-5471-01 6 85472425 85472425 C T TBX18 Missense_Mutation p.A112T 0.33 tolerated(0.35) benign(0.003) TCGA-22-5471-01 6 97613216 97613216 C A MMS22L Missense_Mutation p.D1043Y 0.17 deleterious(0.02) benign(0.444) TCGA-22-5471-01 7 105098242 105098242 G A PUS7 Missense_Mutation p.R661C 0.05 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-22-5471-01 7 120590908 120590908 T G ING3 5'UTR 0.29 TCGA-22-5471-01 7 120737851 120737851 G A CPED1 Missense_Mutation p.V239M 0.11 tolerated(0.78) benign(0.001) TCGA-22-5471-01 7 122769455 122769455 T C SLC13A1 Missense_Mutation p.Q338R 0.23 tolerated(0.61) benign(0.008) TCGA-22-5471-01 7 127014786 127014786 C A ZNF800 Nonsense_Mutation p.E202* 0.11 TCGA-22-5471-01 7 136849041 136849041 T C hsa-mir-490 Intron 0.33 TCGA-22-5471-01 7 142013428 142013428 C A TRBV4-1 Missense_Mutation p.L95I 0.11 deleterious(0) probably_damaging(0.998) TCGA-22-5471-01 7 142326998 142326998 C T TRBV19 Missense_Mutation p.S99L 0.37 tolerated(0.06) benign(0.009) TCGA-22-5471-01 7 142723348 142723348 T A OR9A2 Missense_Mutation p.D291V 0.28 deleterious(0) possibly_damaging(0.883) TCGA-22-5471-01 7 31378224 31378224 G A NEUROD6 Missense_Mutation p.P220L 0.26 deleterious(0.01) probably_damaging(0.975) TCGA-22-5471-01 7 42007296 42007296 G C GLI3 Missense_Mutation p.H777D 0.25 deleterious(0.03) benign(0.15) TCGA-22-5471-01 7 42018290 42018290 C A GLI3 Missense_Mutation p.D519Y 0.22 deleterious(0.01) probably_damaging(0.927) TCGA-22-5471-01 7 48315588 48315588 G T ABCA13 Missense_Mutation p.D2109Y 0.15 benign(0.298) TCGA-22-5471-01 7 4917519 4917519 G A RADIL Silent p.T84T 0.06 TCGA-22-5471-01 7 82538240 82538240 G A PCLO Missense_Mutation p.P4464S 0.41 unknown(0) TCGA-22-5471-01 7 92983068 92983068 A G CCDC132 Silent p.V860V 0.14 TCGA-22-5471-01 7 94047860 94047860 C A COL1A2 Missense_Mutation p.A674D 0.19 unknown(0) TCGA-22-5471-01 7 99159994 99159994 T G ZNF655 Intron 0.19 TCGA-22-5471-01 7 99669489 99669489 G C ZNF3 Missense_Mutation p.S206R 0.06 deleterious(0) benign(0.401) TCGA-22-5471-01 7 99669784 99669784 G T ZNF3 Nonsense_Mutation p.S108* 0.05 TCGA-22-5471-01 8 105263969 105263969 C T RIMS2 Missense_Mutation p.P1324L 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-22-5471-01 8 110100167 110100167 C A TRHR Silent p.A142A 0.20 TCGA-22-5471-01 8 113418827 113418827 C A CSMD3 Missense_Mutation p.G1912V 0.41 deleterious(0) probably_damaging(1) TCGA-22-5471-01 8 113418828 113418828 C A CSMD3 Nonsense_Mutation p.G1912* 0.41 TCGA-22-5471-01 8 118170057 118170057 C A SLC30A8 Silent p.S182S 0.19 TCGA-22-5471-01 8 119122430 119122430 C G EXT1 Missense_Mutation p.V286L 0.18 tolerated(0.93) benign(0.028) TCGA-22-5471-01 8 120116039 120116039 G A COLEC10 Missense_Mutation p.G116D 0.05 deleterious(0) probably_damaging(1) TCGA-22-5471-01 8 130760561 130760561 A T GSDMC 3'UTR 0.29 TCGA-22-5471-01 8 131797705 131797705 C A ADCY8 Missense_Mutation p.R1026L 0.11 tolerated(0.12) benign(0.001) TCGA-22-5471-01 8 14095170 14095170 G T SGCZ Missense_Mutation p.Q119K 0.27 tolerated(0.12) benign(0.107) TCGA-22-5471-01 8 48309125 48309125 C G SPIDR Missense_Mutation p.Q239E 0.04 tolerated(0.14) benign(0.023) TCGA-22-5471-01 8 52258417 52258417 A G PXDNL Missense_Mutation p.M1331T 0.36 tolerated(0.41) benign(0) TCGA-22-5471-01 8 54142277 54142277 G A OPRK1 Silent p.I241I 0.18 TCGA-22-5471-01 8 72958748 72958748 G A TRPA1 Silent p.N687N 0.19 TCGA-22-5471-01 8 72977745 72977745 C G TRPA1 Missense_Mutation p.G165R 0.19 deleterious(0.03) possibly_damaging(0.712) TCGA-22-5471-01 8 89053787 89053787 A G MMP16 Missense_Mutation p.C576R 0.18 deleterious(0) probably_damaging(0.999) TCGA-22-5471-01 9 115652604 115652604 G T SLC46A2 Missense_Mutation p.R120S 0.19 deleterious(0.02) probably_damaging(1) TCGA-22-5471-01 9 118140 118140 C T FOXD4 5'UTR 0.33 TCGA-22-5471-01 9 133942459 133942459 C T LAMC3 Silent p.A820A 0.07 TCGA-22-5471-01 9 134074366 134074366 G A NUP214 Missense_Mutation p.A1829T 0.16 possibly_damaging(0.646) TCGA-22-5471-01 9 36211679 36211679 G A CLTA Missense_Mutation p.D219N 0.08 deleterious(0) probably_damaging(0.998) TCGA-22-5471-01 9 79996916 79996916 G A VPS13A Silent p.E3034E 0.16 TCGA-22-5471-01 9 84531657 84531657 A T SPATA31D5P RNA 0.11 TCGA-22-5471-01 9 91943756 91943760 TTCTC - SECISBP2 Frame_Shift_Del p.L254Kfs*14 0.43 TCGA-22-5471-01 X 105279133 105279133 A T SERPINA7 Missense_Mutation p.L289Q 0.05 deleterious(0) probably_damaging(1) TCGA-22-5471-01 X 114082653 114082653 G C HTR2C Missense_Mutation p.C146S 0.61 deleterious(0) probably_damaging(0.98) TCGA-22-5471-01 X 135570433 135570433 T A BRS3 Missense_Mutation p.Y54N 0.12 deleterious(0) probably_damaging(0.999) TCGA-22-5471-01 X 139866289 139866289 A G CDR1 Silent p.F81F 0.05 TCGA-22-5471-01 X 69595965 69595965 C A KIF4A Silent p.R647R 0.77 TCGA-22-5471-01 X 82763715 82763715 G T POU3F4 Missense_Mutation p.G128V 0.19 deleterious(0.03) benign(0.005) TCGA-22-5471-01 X 86773098 86773098 C A KLHL4 Missense_Mutation p.P68T 0.56 tolerated_low_confidence(0.07) possibly_damaging(0.506) TCGA-22-5471-01 X 89177805 89177805 C A TGIF2LX Missense_Mutation p.P241T 0.67 deleterious(0) probably_damaging(0.981) TCGA-22-5472-01 10 104170857 104170857 C A PSD Silent p.L653L 0.20 TCGA-22-5472-01 10 104687261 104687261 A C CNNM2 Intron 0.50 TCGA-22-5472-01 10 106927081 106927081 C A SORCS3 Missense_Mutation p.H625Q 0.27 tolerated(0.32) benign(0.003) TCGA-22-5472-01 10 121436371 121436371 G T BAG3 Silent p.L435L 0.14 TCGA-22-5472-01 10 124358338 124358338 G T DMBT1 Missense_Mutation p.C1002F 0.05 deleterious(0.01) probably_damaging(0.972) TCGA-22-5472-01 10 135020657 135020657 G C KNDC1 Missense_Mutation p.R1199P 0.29 deleterious(0.01) possibly_damaging(0.663) TCGA-22-5472-01 10 15647751 15647751 C A ITGA8 Missense_Mutation p.V648F 0.22 deleterious(0.03) possibly_damaging(0.47) TCGA-22-5472-01 10 24790396 24790396 C A KIAA1217 Silent p.A641A 0.18 TCGA-22-5472-01 10 26558081 26558081 G T GAD2 Missense_Mutation p.R318S 0.36 tolerated(0.17) probably_damaging(0.974) TCGA-22-5472-01 10 38121037 38121037 C A ZNF248 Missense_Mutation p.A416S 0.30 tolerated(1) benign(0.065) TCGA-22-5472-01 10 48370495 48370495 C A ZNF488 5'UTR 0.24 TCGA-22-5472-01 10 48371573 48371573 A C ZNF488 3'UTR 0.07 TCGA-22-5472-01 10 49395304 49395304 C A FRMPD2 Missense_Mutation p.A733S 0.38 tolerated(0.53) benign(0.055) TCGA-22-5472-01 10 50531636 50531636 G T C10orf71 Missense_Mutation p.W349L 0.35 deleterious(0.03) probably_damaging(0.969) TCGA-22-5472-01 10 71697401 71697401 G T COL13A1 Missense_Mutation p.G592V 0.26 deleterious(0) probably_damaging(1) TCGA-22-5472-01 10 72434586 72434586 G T ADAMTS14 Missense_Mutation p.L119F 0.26 deleterious(0.04) probably_damaging(0.986) TCGA-22-5472-01 10 73560461 73560461 C A CDH23 Silent p.A237A 0.29 TCGA-22-5472-01 10 73970533 73970533 G T ASCC1 Missense_Mutation p.Q57K 0.36 tolerated(1) benign(0.001) TCGA-22-5472-01 10 75855548 75855548 G T VCL Missense_Mutation p.A560S 0.29 tolerated(0.72) benign(0.016) TCGA-22-5472-01 10 88912598 88912598 C A FAM35A Missense_Mutation p.A496E 0.24 deleterious(0) probably_damaging(0.964) TCGA-22-5472-01 10 90770326 90770326 A T FAS Silent p.T158T 0.40 TCGA-22-5472-01 11 1017439 1017439 C A MUC6 Missense_Mutation p.A1788S 0.08 benign(0.364) TCGA-22-5472-01 11 113630951 113630951 C A ZW10 Missense_Mutation p.W187L 0.30 deleterious(0.01) probably_damaging(0.994) TCGA-22-5472-01 11 124006897 124006897 A T VWA5A Missense_Mutation p.H474L 0.35 deleterious(0.05) benign(0.001) TCGA-22-5472-01 11 124950581 124950581 G A SLC37A2 Missense_Mutation p.G200D 0.06 deleterious(0) probably_damaging(0.965) TCGA-22-5472-01 11 128710080 128710080 C T KCNJ1 Missense_Mutation p.R39K 0.23 tolerated(0.28) benign(0.005) TCGA-22-5472-01 11 134212652 134212652 G T GLB1L2 Missense_Mutation p.D31Y 0.25 deleterious(0.01) possibly_damaging(0.594) TCGA-22-5472-01 11 18729456 18729456 G T IGSF22 Missense_Mutation p.Q1059K 0.38 deleterious(0.01) probably_damaging(0.992) TCGA-22-5472-01 11 20668449 20668449 G T SLC6A5 Missense_Mutation p.C680F 0.35 deleterious(0) possibly_damaging(0.752) TCGA-22-5472-01 11 2154297 2154297 G C IGF2 Missense_Mutation p.H211D 0.36 deleterious(0.01) possibly_damaging(0.491) TCGA-22-5472-01 11 22399257 22399257 A T SLC17A6 Missense_Mutation p.S574C 0.46 tolerated(0.09) benign(0.195) TCGA-22-5472-01 11 237013 237013 C G PSMD13 5'UTR 0.36 TCGA-22-5472-01 11 2424345 2424345 G A TSSC4 Missense_Mutation p.R161H 0.38 deleterious(0) probably_damaging(0.999) TCGA-22-5472-01 11 308295 308295 C A IFITM2 Missense_Mutation p.H35N 0.27 tolerated(0.11) benign(0.339) TCGA-22-5472-01 11 31531418 31531418 C - ELP4 Frame_Shift_Del p.Q30Rfs*9 0.18 TCGA-22-5472-01 11 34145879 34145879 C A NAT10 Missense_Mutation p.L347I 0.22 deleterious(0.01) benign(0.1) TCGA-22-5472-01 11 4104115 4104115 G T STIM1 Nonsense_Mutation p.E381* 0.34 TCGA-22-5472-01 11 4510283 4510283 C A OR52K1 Silent p.I51I 0.33 TCGA-22-5472-01 11 4510851 4510851 G T OR52K1 Missense_Mutation p.G241W 0.31 deleterious(0) probably_damaging(1) TCGA-22-5472-01 11 47594781 47594781 C A KBTBD4 Missense_Mutation p.A436S 0.27 tolerated(0.26) possibly_damaging(0.85) TCGA-22-5472-01 11 49168251 49168251 G T FOLH1 3'UTR 0.27 TCGA-22-5472-01 11 5364168 5364168 T A OR51B5 Missense_Mutation p.Y196F 0.33 deleterious(0.01) probably_damaging(1) TCGA-22-5472-01 11 57268290 57268290 C A SLC43A1 Missense_Mutation p.G143C 0.29 deleterious(0) probably_damaging(1) TCGA-22-5472-01 11 5969290 5969290 G T OR56A3 Silent p.V238V 0.26 TCGA-22-5472-01 11 605684 605684 C A PHRF1 Missense_Mutation p.H471N 0.16 deleterious(0) probably_damaging(0.998) TCGA-22-5472-01 11 6191304 6191304 C A OR52B2 Missense_Mutation p.A85S 0.26 tolerated(0.45) benign(0.242) TCGA-22-5472-01 11 62591738 62591738 C G STX5 Missense_Mutation p.A270P 0.21 deleterious(0) probably_damaging(0.984) TCGA-22-5472-01 11 63517542 63517542 G T RTN3 Silent p.L870L 0.48 TCGA-22-5472-01 11 64056684 64056684 C A GPR137 Silent p.P425P 0.13 TCGA-22-5472-01 11 64695367 64695367 C A PPP2R5B Missense_Mutation p.H164N 0.34 deleterious(0) probably_damaging(0.984) TCGA-22-5472-01 11 64813812 64813812 C A NAALADL1 Silent p.V568V 0.33 TCGA-22-5472-01 11 65633352 65633352 G T MUS81 Missense_Mutation p.G526W 0.27 deleterious(0) probably_damaging(0.999) TCGA-22-5472-01 11 66321527 66321527 G T CTD-3074O7.2 3'Flank 0.15 TCGA-22-5472-01 11 67864490 67864490 T A CHKA Missense_Mutation p.Q153L 0.29 deleterious(0) benign(0.297) TCGA-22-5472-01 11 67925195 67925195 G T SUV420H1 Nonsense_Mutation p.S873* 0.22 TCGA-22-5472-01 11 6867383 6867383 C A OR10A5 Missense_Mutation p.A157D 0.22 tolerated(0.11) probably_damaging(0.937) TCGA-22-5472-01 11 73688003 73688003 C A UCP2 Missense_Mutation p.V133L 0.29 tolerated(0.37) benign(0.002) TCGA-22-5472-01 11 76234316 76234316 C A C11orf30 Missense_Mutation p.T601K 0.09 deleterious(0) probably_damaging(0.95) TCGA-22-5472-01 11 8751621 8751621 G T ST5 Missense_Mutation p.P406T 0.29 tolerated(0.09) probably_damaging(0.928) TCGA-22-5472-01 11 87908499 87908499 C A RAB38 Silent p.L18L 0.30 TCGA-22-5472-01 12 100551470 100551470 T A AC010203.1 5'Flank 0.24 TCGA-22-5472-01 12 105150891 105150891 G T CHST11 Silent p.V123V 0.36 TCGA-22-5472-01 12 111336788 111336788 G C CCDC63 Missense_Mutation p.G401R 0.18 tolerated(0.26) benign(0.001) TCGA-22-5472-01 12 111342571 111342571 C A CCDC63 Missense_Mutation p.P508T 0.28 tolerated(0.17) benign(0.057) TCGA-22-5472-01 12 11506888 11506888 G T PRB1 Missense_Mutation p.P50H 0.27 tolerated_low_confidence(0.13) unknown(0) TCGA-22-5472-01 12 115114251 115114251 C A TBX3 Missense_Mutation p.M322I 0.27 tolerated(0.06) benign(0.009) TCGA-22-5472-01 12 118199236 118199236 G A KSR2 Missense_Mutation p.P189L 0.26 deleterious(0.03) benign(0.001) TCGA-22-5472-01 12 120741815 120741815 A G SIRT4 Missense_Mutation p.K151E 0.29 deleterious(0) probably_damaging(0.967) TCGA-22-5472-01 12 12315200 12315200 C A LRP6 Missense_Mutation p.G736W 0.29 deleterious(0) probably_damaging(1) TCGA-22-5472-01 12 126138253 126138253 G T TMEM132B Missense_Mutation p.W745L 0.26 deleterious(0.02) benign(0.125) TCGA-22-5472-01 12 132625014 132625014 G T DDX51 Missense_Mutation p.Q543K 0.31 tolerated(0.25) benign(0.088) TCGA-22-5472-01 12 13715977 13715977 G T GRIN2B Missense_Mutation p.H1399N 0.23 deleterious(0.02) probably_damaging(0.995) TCGA-22-5472-01 12 247966 247966 G C IQSEC3 Silent p.G479G 0.27 TCGA-22-5472-01 12 28458699 28458699 C G CCDC91 Missense_Mutation p.A76G 0.32 tolerated(0.16) benign(0.068) TCGA-22-5472-01 12 40761490 40761490 G T LRRK2 Nonsense_Mutation p.E2503* 0.24 TCGA-22-5472-01 12 48393728 48393728 C A COL2A1 Missense_Mutation p.C89F 0.24 unknown(0) TCGA-22-5472-01 12 49691238 49691238 G T PRPH Silent p.L365L 0.40 TCGA-22-5472-01 12 49743486 49743486 G T DNAJC22 Silent p.L277L 0.08 TCGA-22-5472-01 12 51281183 51281183 T G TMPRSS12 Missense_Mutation p.W312G 0.39 deleterious(0.03) probably_damaging(0.928) TCGA-22-5472-01 12 52788838 52788838 C A KRT82 Missense_Mutation p.G488V 0.40 tolerated(0.26) possibly_damaging(0.454) TCGA-22-5472-01 12 52967271 52967271 C A KRT74 Silent p.V97V 0.18 TCGA-22-5472-01 12 53045530 53045530 C A KRT2 Nonsense_Mutation p.G133* 0.19 TCGA-22-5472-01 12 53585733 53585733 C A ITGB7 Silent p.L742L 0.15 TCGA-22-5472-01 12 56848109 56848109 C A MIP Missense_Mutation p.A97S 0.06 deleterious(0.04) possibly_damaging(0.84) TCGA-22-5472-01 12 57562984 57562984 G T LRP1 Missense_Mutation p.Q1019H 0.16 probably_damaging(0.995) TCGA-22-5472-01 12 9009811 9009811 C G A2ML1 Missense_Mutation p.P967R 0.35 deleterious(0) probably_damaging(0.995) TCGA-22-5472-01 12 94975615 94975615 C A TMCC3 Missense_Mutation p.G260C 0.25 deleterious(0.01) probably_damaging(0.982) TCGA-22-5472-01 13 32930590 32930590 C A BRCA2 Silent p.A2487A 0.27 TCGA-22-5472-01 13 49085987 49085987 G A RCBTB2 Silent p.N234N 0.09 TCGA-22-5472-01 13 53422390 53422390 G T PCDH8 Missense_Mutation p.T61K 0.47 deleterious(0.02) benign(0.096) TCGA-22-5472-01 14 102484926 102484926 C A DYNC1H1 Silent p.A2772A 0.12 TCGA-22-5472-01 14 102606387 102606387 C A WDR20 Missense_Mutation p.Q43K 0.25 tolerated(0.13) benign(0.254) TCGA-22-5472-01 14 102675626 102675626 C A WDR20 Silent p.G404G 0.31 TCGA-22-5472-01 14 103805111 103805111 G T EIF5 Nonsense_Mutation p.E209* 0.34 TCGA-22-5472-01 14 106866535 106866535 A G IGHV3-38 Silent p.G73G 0.28 TCGA-22-5472-01 14 35761786 35761786 C A PSMA6 Intron 0.10 TCGA-22-5472-01 14 50246968 50246968 C A KLHDC2 Missense_Mutation p.H271N 0.19 deleterious(0) probably_damaging(0.963) TCGA-22-5472-01 14 50789330 50789330 G T ATP5S Missense_Mutation p.W85L 0.35 tolerated(0.08) probably_damaging(0.971) TCGA-22-5472-01 14 55203796 55203796 C A SAMD4A Missense_Mutation p.P257Q 0.04 deleterious(0) probably_damaging(0.965) TCGA-22-5472-01 14 61190688 61190688 C A SIX4 Silent p.V35V 0.20 TCGA-22-5472-01 14 61747089 61747089 C A TMEM30B Silent p.L259L 0.18 TCGA-22-5472-01 14 71199923 71199923 G T MAP3K9 Silent p.P735P 0.25 TCGA-22-5472-01 14 73718255 73718255 T C PAPLN Intron 0.38 TCGA-22-5472-01 14 73727902 73727902 G T PAPLN Missense_Mutation p.E688D 0.22 tolerated(0.24) possibly_damaging(0.615) TCGA-22-5472-01 14 93686640 93686640 G T UBR7 Missense_Mutation p.D336Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-22-5472-01 14 94173264 94173264 C A UNC79 3'UTR 0.34 TCGA-22-5472-01 15 101597159 101597159 C A LRRK1 Silent p.S1477S 0.33 TCGA-22-5472-01 15 102255120 102255120 G A TARSL2 Silent p.L205L 0.32 TCGA-22-5472-01 15 25470407 25470407 G T SNORD115-30 RNA 0.28 TCGA-22-5472-01 15 40094103 40094103 G T GPR176 Silent p.R260R 0.30 TCGA-22-5472-01 15 42621565 42621565 C A GANC Missense_Mutation p.P521Q 0.37 probably_damaging(0.981) TCGA-22-5472-01 15 43527059 43527059 G A TGM5 Missense_Mutation p.R595C 0.22 tolerated(0.05) probably_damaging(0.976) TCGA-22-5472-01 15 55912220 55912220 G T PRTG Missense_Mutation p.P1148H 0.36 deleterious_low_confidence(0) possibly_damaging(0.87) TCGA-22-5472-01 15 58855731 58855731 G T LIPC Silent p.T399T 0.35 TCGA-22-5472-01 15 60298080 60298080 C A FOXB1 Silent p.A306A 0.31 TCGA-22-5472-01 15 66048743 66048743 C A DENND4A Missense_Mutation p.A16S 0.22 deleterious(0) possibly_damaging(0.899) TCGA-22-5472-01 15 66615210 66615210 C A DIS3L Missense_Mutation p.H504Q 0.34 deleterious(0) probably_damaging(1) TCGA-22-5472-01 15 67835570 67835570 T G MAP2K5 5'UTR 0.41 TCGA-22-5472-01 15 73023961 73023961 G T BBS4 Missense_Mutation p.L310F 0.37 deleterious(0) probably_damaging(1) TCGA-22-5472-01 15 75702220 75702220 C A SIN3A Missense_Mutation p.C425F 0.05 tolerated(0.7) benign(0.162) TCGA-22-5472-01 15 75982089 75982089 C A CSPG4 Silent p.V439V 0.22 TCGA-22-5472-01 15 85486718 85486718 G T SLC28A1 Missense_Mutation p.A542S 0.13 tolerated(0.17) benign(0.372) TCGA-22-5472-01 15 88678528 88678528 C T NTRK3 Silent p.L336L 0.22 TCGA-22-5472-01 15 89074248 89074248 G A DET1 Missense_Mutation p.A241V 0.32 tolerated(0.06) probably_damaging(0.989) TCGA-22-5472-01 15 89401694 89401694 G T ACAN Missense_Mutation p.G1960C 0.09 deleterious(0.01) probably_damaging(0.99) TCGA-22-5472-01 15 90631588 90631588 C A IDH2 Intron 0.38 TCGA-22-5472-01 15 91524153 91524153 G T PRC1 Silent p.A261A 0.24 TCGA-22-5472-01 16 1034912 1034912 G T SOX8 Silent p.L289L 0.29 TCGA-22-5472-01 16 11066808 11066808 C A CLEC16A Silent p.A206A 0.26 TCGA-22-5472-01 16 12146003 12146003 G T SNX29 Missense_Mutation p.V350L 0.19 tolerated_low_confidence(0.21) benign(0.006) TCGA-22-5472-01 16 1250467 1250467 A C CACNA1H Missense_Mutation p.N339H 0.16 deleterious(0) probably_damaging(0.999) TCGA-22-5472-01 16 1545603 1545603 G A TELO2 Missense_Mutation p.A198T 0.33 tolerated(0.55) benign(0.005) TCGA-22-5472-01 16 21728314 21728314 G T OTOA Missense_Mutation p.R525S 0.31 deleterious(0.03) benign(0.06) TCGA-22-5472-01 16 2331439 2331439 C A ABCA3 Silent p.L1369L 0.11 TCGA-22-5472-01 16 23716314 23716314 C A ERN2 Silent p.L296L 0.34 TCGA-22-5472-01 16 2580743 2580743 G T CEMP1 Missense_Mutation p.P111Q 0.40 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-22-5472-01 16 28604827 28604827 C A SULT1A2 Missense_Mutation p.M145I 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-22-5472-01 16 28965898 28965898 C A NFATC2IP Missense_Mutation p.A158E 0.28 tolerated(0.2) benign(0.025) TCGA-22-5472-01 16 2905791 2905791 C A PRSS22 Missense_Mutation p.G115C 0.18 deleterious(0) probably_damaging(1) TCGA-22-5472-01 16 30038080 30038080 G T FAM57B Missense_Mutation p.H98Q 0.18 deleterious(0.01) possibly_damaging(0.676) TCGA-22-5472-01 16 30123997 30123997 C A GDPD3 Silent p.V100V 0.39 TCGA-22-5472-01 16 30364605 30364605 G T CD2BP2 Missense_Mutation p.A271E 0.20 tolerated(1) benign(0.008) TCGA-22-5472-01 16 30389812 30389812 C T SEPT1 Silent p.K354K 0.20 TCGA-22-5472-01 16 31105680 31105680 G A VKORC1 Intron 0.30 TCGA-22-5472-01 16 33647476 33647476 G T RP11-812E19.9 Missense_Mutation p.P42T 0.31 deleterious_low_confidence(0.04) benign(0) TCGA-22-5472-01 16 3640826 3640826 G T SLX4 Missense_Mutation p.A938E 0.25 tolerated(1) benign(0.004) TCGA-22-5472-01 16 66918303 66918303 G T PDP2 Missense_Mutation p.W39L 0.30 tolerated_low_confidence(0.13) benign(0.004) TCGA-22-5472-01 16 67241850 67241850 G T LRRC29 Silent p.G143G 0.50 TCGA-22-5472-01 16 67709359 67709359 G T GFOD2 Missense_Mutation p.A286E 0.20 tolerated(0.31) benign(0.004) TCGA-22-5472-01 16 67760357 67760357 C A RANBP10 Missense_Mutation p.A613S 0.27 deleterious(0.02) probably_damaging(0.985) TCGA-22-5472-01 16 67917564 67917564 C T EDC4 Nonsense_Mutation p.Q1315* 0.30 TCGA-22-5472-01 16 703577 703577 C A WDR90 Missense_Mutation p.A429E 0.32 deleterious(0.03) benign(0.419) TCGA-22-5472-01 16 72832356 72832356 C A ZFHX3 Missense_Mutation p.A1409S 0.23 probably_damaging(0.985) TCGA-22-5472-01 16 745747 745747 C A FBXL16 Silent p.L270L 0.30 TCGA-22-5472-01 16 747007 747007 G T FBXL16 Missense_Mutation p.F133L 0.39 tolerated(0.06) benign(0.1) TCGA-22-5472-01 16 74937894 74937894 C A WDR59 Missense_Mutation p.R606L 0.25 deleterious(0.02) possibly_damaging(0.621) TCGA-22-5472-01 16 775523 775523 G T CCDC78 Missense_Mutation p.Q109K 0.34 tolerated(1) benign(0.083) TCGA-22-5472-01 16 81045548 81045548 G A CENPN Missense_Mutation p.D2N 0.37 deleterious(0) probably_damaging(0.91) TCGA-22-5472-01 16 82033639 82033639 G T SDR42E1 Silent p.R87R 0.32 TCGA-22-5472-01 16 89804097 89804097 A T FANCA 3'UTR 0.50 TCGA-22-5472-01 17 1303366 1303366 C A YWHAE Silent p.L13L 0.50 TCGA-22-5472-01 17 1577070 1577070 C A PRPF8 Missense_Mutation p.R1139L 0.18 deleterious(0) possibly_damaging(0.868) TCGA-22-5472-01 17 18148710 18148710 C G FLII Missense_Mutation p.Q1211H 0.09 tolerated(0.08) probably_damaging(0.942) TCGA-22-5472-01 17 19286527 19286527 G T MAPK7 Missense_Mutation p.D812Y 0.23 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-22-5472-01 17 28758837 28758837 G T CPD Missense_Mutation p.A689S 0.50 tolerated(0.93) benign(0.021) TCGA-22-5472-01 17 29670025 29670025 A G NF1 Splice_Site p.X2355_splice 0.55 TCGA-22-5472-01 17 34935839 34935839 A T GGNBP2 Missense_Mutation p.K337M 0.48 deleterious(0) probably_damaging(0.987) TCGA-22-5472-01 17 37563746 37563746 C A MED1 Silent p.V1576V 0.51 TCGA-22-5472-01 17 39768836 39768836 C A KRT16 Silent p.L35L 0.62 TCGA-22-5472-01 17 41063047 41063047 G T G6PC Silent p.L226L 0.50 TCGA-22-5472-01 17 42330535 42330535 C A SLC4A1 Missense_Mutation p.Q754H 0.50 deleterious(0.05) probably_damaging(0.986) TCGA-22-5472-01 17 42475217 42475217 G T GPATCH8 Missense_Mutation p.Q1410K 0.47 deleterious(0) unknown(0) TCGA-22-5472-01 17 61902031 61902031 G C FTSJ3 Missense_Mutation p.Q295E 0.52 tolerated(0.08) benign(0.089) TCGA-22-5472-01 17 62272361 62272361 C A TEX2 Missense_Mutation p.R580I 0.43 deleterious(0) probably_damaging(0.988) TCGA-22-5472-01 17 66267059 66267059 G T SLC16A6 Silent p.G414G 0.11 TCGA-22-5472-01 17 72368028 72368028 G T GPR142 Silent p.V226V 0.63 TCGA-22-5472-01 17 7579581 7579598 GCAAGGGGGACTGTAGAT - TP53 Splice_Site p.X33_splice 0.52 TCGA-22-5472-01 17 7727540 7727540 G T DNAH2 Missense_Mutation p.M3860I 0.64 possibly_damaging(0.595) TCGA-22-5472-01 17 79846200 79846200 T C ALYREF Missense_Mutation p.R233G 0.39 tolerated(0.25) possibly_damaging(0.817) TCGA-22-5472-01 17 80445995 80445995 C A NARF Missense_Mutation p.Q445K 0.07 tolerated(0.11) benign(0.016) TCGA-22-5472-01 18 11851718 11851718 G T CHMP1B Missense_Mutation p.A70S 0.16 tolerated(1) benign(0.122) TCGA-22-5472-01 18 21534555 21534555 C A LAMA3 Silent p.V3315V 0.25 TCGA-22-5472-01 18 21743109 21743109 G T OSBPL1A 3'UTR 0.23 TCGA-22-5472-01 18 23866021 23866021 C A TAF4B Missense_Mutation p.S383Y 0.23 deleterious(0) possibly_damaging(0.907) TCGA-22-5472-01 18 25570062 25570062 T C CDH2 Missense_Mutation p.R533G 0.27 deleterious(0.01) benign(0.01) TCGA-22-5472-01 18 28918392 28918392 C A DSG1 Nonsense_Mutation p.Y460* 0.19 TCGA-22-5472-01 18 28972210 28972210 G T DSG4 Missense_Mutation p.L304F 0.28 tolerated(0.09) possibly_damaging(0.73) TCGA-22-5472-01 18 29055916 29055916 G T DSG3 Missense_Mutation p.C898F 0.16 tolerated(0.7) benign(0.049) TCGA-22-5472-01 18 29056145 29056145 C A DSG3 Silent p.G974G 0.21 TCGA-22-5472-01 18 33263508 33263508 G T GALNT1 Missense_Mutation p.C212F 0.15 deleterious(0) probably_damaging(0.979) TCGA-22-5472-01 18 34839189 34839189 G A CELF4 Nonsense_Mutation p.Q430* 0.25 TCGA-22-5472-01 18 50741921 50741921 C A DCC Missense_Mutation p.P622Q 0.25 deleterious(0.04) probably_damaging(0.999) TCGA-22-5472-01 18 5291962 5291962 C T ZBTB14 Missense_Mutation p.R82H 0.07 tolerated(0.14) probably_damaging(0.997) TCGA-22-5472-01 18 6961946 6961946 C T LAMA1 Missense_Mutation p.E2484K 0.27 tolerated(0.07) benign(0.096) TCGA-22-5472-01 18 77171011 77171011 G A NFATC1 Missense_Mutation p.V233I 0.39 tolerated(0.75) benign(0.012) TCGA-22-5472-01 19 1055129 1055129 C A ABCA7 Silent p.A1328A 0.30 TCGA-22-5472-01 19 10792704 10792704 C T ILF3 Silent p.L406L 0.28 TCGA-22-5472-01 19 15227233 15227235 CTT - ILVBL In_Frame_Del p.K429del 0.24 TCGA-22-5472-01 19 17212975 17212975 G T MYO9B Missense_Mutation p.D150Y 0.31 deleterious(0) probably_damaging(1) TCGA-22-5472-01 19 3282474 3282474 C A CELF5 Silent p.A339A 0.22 TCGA-22-5472-01 19 36133394 36133394 C A ETV2 Missense_Mutation p.P11Q 0.24 deleterious(0) possibly_damaging(0.844) TCGA-22-5472-01 19 3623767 3623767 C A CACTIN Missense_Mutation p.W187C 0.20 deleterious(0) probably_damaging(0.997) TCGA-22-5472-01 19 38895709 38895709 C A FAM98C Missense_Mutation p.P171T 0.07 tolerated(0.37) possibly_damaging(0.685) TCGA-22-5472-01 19 38911820 38911820 G T RASGRP4 Missense_Mutation p.H77N 0.30 tolerated(0.19) benign(0.024) TCGA-22-5472-01 19 39798893 39798893 C T LRFN1 Missense_Mutation p.D566N 0.48 tolerated(0.18) benign(0.191) TCGA-22-5472-01 19 41040149 41040149 G T SPTBN4 Missense_Mutation p.A1420S 0.40 tolerated(0.57) benign(0.289) TCGA-22-5472-01 19 41115449 41115449 C A LTBP4 Silent p.G547G 0.14 TCGA-22-5472-01 19 4298276 4298276 C G TMIGD2 Missense_Mutation p.S38T 0.16 tolerated(0.1) benign(0.011) TCGA-22-5472-01 19 44039768 44039768 G T ZNF575 Missense_Mutation p.G223C 0.42 deleterious(0.02) probably_damaging(1) TCGA-22-5472-01 19 4446553 4446553 C A UBXN6 Silent p.L288L 0.17 TCGA-22-5472-01 19 4512634 4512634 C A PLIN4 Missense_Mutation p.L432F 0.04 deleterious(0.01) benign(0.187) TCGA-22-5472-01 19 45575836 45575836 G C ZNF296 Missense_Mutation p.R151G 0.22 tolerated(0.38) benign(0.033) TCGA-22-5472-01 19 48248819 48248819 G T GLTSCR2 Translation_Start_Site p.M1? 0.04 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-22-5472-01 19 48806033 48806033 G T CCDC114 Silent p.R349R 0.30 TCGA-22-5472-01 19 48836478 48836478 A G TMEM143 Nonstop_Mutation p.*460Rext*14 0.23 TCGA-22-5472-01 19 48908114 48908114 C A GRIN2D Missense_Mutation p.H197N 0.26 tolerated(0.06) possibly_damaging(0.557) TCGA-22-5472-01 19 49797732 49797732 G T SLC6A16 Nonsense_Mutation p.Y436* 0.26 TCGA-22-5472-01 19 54183251 54183251 C T MIR519E RNA 0.26 TCGA-22-5472-01 19 54754789 54754789 G C LILRB5 Missense_Mutation p.A546G 0.27 deleterious(0.05) benign(0.083) TCGA-22-5472-01 19 54780734 54780734 G T LILRB2 Silent p.V470V 0.17 TCGA-22-5472-01 19 55175367 55175367 G T LILRB4 Nonsense_Mutation p.E76* 0.26 TCGA-22-5472-01 19 55329906 55329906 C A KIR3DL1 Silent p.P69P 0.64 TCGA-22-5472-01 19 55439056 55439056 C A NLRP7 Silent p.L966L 0.22 TCGA-22-5472-01 19 56952734 56952734 G A ZNF667 Silent p.L544L 0.38 TCGA-22-5472-01 19 57328879 57328879 G T PEG3 Missense_Mutation p.H311N 0.36 deleterious(0.01) probably_damaging(0.959) TCGA-22-5472-01 19 57665712 57665712 C A DUXA 3'UTR 0.33 TCGA-22-5472-01 19 57910055 57910055 G C ZNF548 Missense_Mutation p.D146H 0.26 deleterious(0) possibly_damaging(0.875) TCGA-22-5472-01 19 6829837 6829837 C A VAV1 Missense_Mutation p.R436S 0.06 deleterious(0.03) probably_damaging(0.967) TCGA-22-5472-01 19 8183899 8183899 G T FBN3 Missense_Mutation p.D1073E 0.21 deleterious(0) possibly_damaging(0.656) TCGA-22-5472-01 19 828280 828280 C A AZU1 Missense_Mutation p.Q37K 0.27 deleterious(0.04) benign(0.022) TCGA-22-5472-01 19 9525231 9525231 T A ZNF266 Missense_Mutation p.T124S 0.44 tolerated(0.46) benign(0.02) TCGA-22-5472-01 1 109265066 109265066 G C FNDC7 Missense_Mutation p.L236F 0.18 tolerated(0.7) benign(0.002) TCGA-22-5472-01 1 109745651 109745651 C A KIAA1324 3'UTR 0.22 TCGA-22-5472-01 1 110884310 110884310 C A RBM15 Silent p.S761S 0.14 TCGA-22-5472-01 1 113666601 113666601 G T LRIG2 Nonsense_Mutation p.E1026* 0.41 TCGA-22-5472-01 1 116676002 116676002 G T MAB21L3 3'UTR 0.14 TCGA-22-5472-01 1 11766571 11766571 C A DRAXIN Missense_Mutation p.Q86K 0.39 tolerated(0.6) benign(0.364) TCGA-22-5472-01 1 118628604 118628604 G T SPAG17 Missense_Mutation p.P568Q 0.19 deleterious(0) probably_damaging(1) TCGA-22-5472-01 1 12405431 12405432 AC - VPS13D Frame_Shift_Del p.T2964Pfs*2 0.35 TCGA-22-5472-01 1 145558874 145558874 C A ANKRD35 Missense_Mutation p.H165N 0.21 deleterious(0) possibly_damaging(0.728) TCGA-22-5472-01 1 150530973 150530973 C A ADAMTSL4 Missense_Mutation p.Q803K 0.36 tolerated(0.36) benign(0.4) TCGA-22-5472-01 1 150939874 150939874 C A CERS2 Missense_Mutation p.K202N 0.33 deleterious(0) probably_damaging(0.997) TCGA-22-5472-01 1 152127910 152127910 C A RPTN Missense_Mutation p.Q555H 0.32 deleterious(0.01) benign(0.058) TCGA-22-5472-01 1 152187517 152187517 G T HRNR Silent p.S2196S 0.05 TCGA-22-5472-01 1 153658631 153658631 T C NPR1 Silent p.R571R 0.29 TCGA-22-5472-01 1 154923709 154923709 T C PBXIP1 Silent p.A136A 0.32 TCGA-22-5472-01 1 155931687 155931687 C A ARHGEF2 Missense_Mutation p.E411D 0.39 tolerated(0.45) benign(0.039) TCGA-22-5472-01 1 157804231 157804231 G C CD5L Missense_Mutation p.C228W 0.28 deleterious(0) probably_damaging(1) TCGA-22-5472-01 1 161697326 161697326 G T FCRLB Silent p.L385L 0.29 TCGA-22-5472-01 1 16332538 16332538 C A C1orf64 Silent p.P69P 0.05 TCGA-22-5472-01 1 16456843 16456843 G T EPHA2 Silent p.L849L 0.26 TCGA-22-5472-01 1 17281810 17281810 G T CROCC Nonsense_Mutation p.E1157* 0.24 TCGA-22-5472-01 1 178427449 178427449 C T RASAL2 Nonsense_Mutation p.Q1008* 0.27 TCGA-22-5472-01 1 17961049 17961049 C A ARHGEF10L Silent p.A579A 0.31 TCGA-22-5472-01 1 179989506 179989506 C A CEP350 Missense_Mutation p.A866E 0.32 benign(0.002) TCGA-22-5472-01 1 180166305 180166305 G T QSOX1 3'UTR 0.21 TCGA-22-5472-01 1 182369170 182369170 G T TEDDM1 Missense_Mutation p.P151T 0.18 deleterious(0) probably_damaging(0.966) TCGA-22-5472-01 1 183191274 183191274 C A LAMC2 Missense_Mutation p.Q231K 0.24 tolerated(0.07) benign(0.017) TCGA-22-5472-01 1 183255900 183255900 G T NMNAT2 Silent p.S115S 0.28 TCGA-22-5472-01 1 183255901 183255901 G T NMNAT2 Missense_Mutation p.S115Y 0.27 tolerated(0.08) probably_damaging(0.989) TCGA-22-5472-01 1 185151152 185151152 G T SWT1 Missense_Mutation p.M367I 0.19 deleterious(0) probably_damaging(0.993) TCGA-22-5472-01 1 201195181 201195181 G T IGFN1 Silent p.V3572V 0.35 TCGA-22-5472-01 1 205902078 205902078 G T SLC26A9 Missense_Mutation p.P87Q 0.19 deleterious(0) probably_damaging(0.998) TCGA-22-5472-01 1 206821606 206821606 G T DYRK3 Missense_Mutation p.D355Y 0.34 deleterious(0) probably_damaging(1) TCGA-22-5472-01 1 206856345 206856345 C A MAPKAPK2 5'Flank 0.32 TCGA-22-5472-01 1 207222725 207222725 G T YOD1 Silent p.S229S 0.33 TCGA-22-5472-01 1 209956842 209956842 C A C1orf74 Silent p.V46V 0.08 TCGA-22-5472-01 1 211527758 211527758 A T TRAF5 Missense_Mutation p.L75F 0.27 tolerated(0.48) benign(0.144) TCGA-22-5472-01 1 211923141 211923141 T - LPGAT1 3'UTR 0.20 TCGA-22-5472-01 1 212220693 212220693 C A DTL Missense_Mutation p.L132M 0.32 deleterious(0.02) benign(0.316) TCGA-22-5472-01 1 214542984 214542985 - T PTPN14 Frame_Shift_Ins p.H1030Afs*47 0.19 TCGA-22-5472-01 1 216251535 216251535 G C USH2A Missense_Mutation p.A1823G 0.35 benign(0.01) TCGA-22-5472-01 1 220275535 220275535 G T IARS2 Missense_Mutation p.M205I 0.11 tolerated(0.07) probably_damaging(0.968) TCGA-22-5472-01 1 231337116 231337116 C T TRIM67 Silent p.L463L 0.31 TCGA-22-5472-01 1 237948048 237948048 G T RYR2 Missense_Mutation p.G4346W 0.27 possibly_damaging(0.628) TCGA-22-5472-01 1 248569619 248569619 C A OR2T1 Silent p.P108P 0.28 TCGA-22-5472-01 1 29609253 29609253 A T PTPRU Missense_Mutation p.D645V 0.14 deleterious(0.04) possibly_damaging(0.623) TCGA-22-5472-01 1 38006033 38006033 C A SNIP1 Missense_Mutation p.E217D 0.33 tolerated(0.25) benign(0.002) TCGA-22-5472-01 1 38078272 38078272 G - RSPO1 3'UTR 0.43 TCGA-22-5472-01 1 43232245 43232245 C A LEPRE1 Missense_Mutation p.S133I 0.29 deleterious(0.01) possibly_damaging(0.859) TCGA-22-5472-01 1 52954643 52954643 C A ZCCHC11 Missense_Mutation p.A485S 0.29 deleterious(0.02) probably_damaging(0.98) TCGA-22-5472-01 1 6196587 6196587 C A CHD5 Nonsense_Mutation p.E896* 0.24 TCGA-22-5472-01 1 6592774 6592774 G T NOL9 Silent p.P428P 0.35 TCGA-22-5472-01 1 6648820 6648820 G T ZBTB48 Silent p.V562V 0.32 TCGA-22-5472-01 1 809513 809513 C A FAM41C 5'Flank 0.18 TCGA-22-5472-01 1 8390781 8390781 G A SLC45A1 Missense_Mutation p.G410S 0.33 tolerated(0.23) benign(0.002) TCGA-22-5472-01 1 93621951 93621951 A T TMED5 Missense_Mutation p.L126Q 0.38 deleterious(0) probably_damaging(0.99) TCGA-22-5472-01 1 9791886 9791886 C A CLSTN1 Silent p.V832V 0.17 TCGA-22-5472-01 20 17489584 17489584 G A BFSP1 Missense_Mutation p.R229W 0.21 deleterious(0.02) benign(0.015) TCGA-22-5472-01 20 25194014 25194014 G T ENTPD6 Missense_Mutation p.G190V 0.29 tolerated(0.06) probably_damaging(0.993) TCGA-22-5472-01 20 279139 279139 G T ZCCHC3 Silent p.L304L 0.28 TCGA-22-5472-01 20 31671639 31671639 C A BPIFB4 Silent p.L212L 0.18 TCGA-22-5472-01 20 32660040 32660040 C A RALY Missense_Mutation p.H54N 0.31 deleterious(0) probably_damaging(1) TCGA-22-5472-01 20 33338098 33338098 G T NCOA6 Missense_Mutation p.Q634K 0.26 possibly_damaging(0.883) TCGA-22-5472-01 20 34053864 34053864 G T CEP250 Missense_Mutation p.R109S 0.19 probably_damaging(0.999) TCGA-22-5472-01 20 39991632 39991632 G T EMILIN3 Missense_Mutation p.L193M 0.19 deleterious(0) probably_damaging(0.999) TCGA-22-5472-01 20 40944489 40944489 G T PTPRT Silent p.A671A 0.27 TCGA-22-5472-01 20 43030116 43030116 C A HNF4A Missense_Mutation p.T35K 0.34 tolerated(0.2) benign(0.056) TCGA-22-5472-01 20 43247069 43247069 G T PKIG 3'UTR 0.07 TCGA-22-5472-01 20 44594330 44594330 G A ZNF335 Missense_Mutation p.P347S 0.32 deleterious(0.01) benign(0.26) TCGA-22-5472-01 20 47248919 47248919 G A PREX1 Silent p.N1474N 0.14 TCGA-22-5472-01 20 47692046 47692046 C A CSE1L Missense_Mutation p.Q442K 0.20 tolerated(0.75) benign(0.006) TCGA-22-5472-01 20 47863852 47863852 G T ZNFX1 Missense_Mutation p.D1903E 0.39 tolerated(0.97) benign(0.009) TCGA-22-5472-01 20 60885757 60885757 G T LAMA5 Silent p.G3470G 0.17 TCGA-22-5472-01 20 61461872 61461872 C A COL9A3 Missense_Mutation p.Q407K 0.31 tolerated(0.71) benign(0.295) TCGA-22-5472-01 20 62120333 62120333 A G EEF1A2 Missense_Mutation p.I401T 0.28 tolerated_low_confidence(0.07) possibly_damaging(0.807) TCGA-22-5472-01 20 62273640 62273640 G T STMN3 Missense_Mutation p.Q102K 0.36 deleterious(0.04) benign(0.138) TCGA-22-5472-01 20 853492 853492 C A ANGPT4 3'UTR 0.23 TCGA-22-5472-01 20 8609072 8609072 G T PLCB1 Silent p.V126V 0.17 TCGA-22-5472-01 21 31744167 31744167 C A KRTAP13-2 Missense_Mutation p.C122F 0.25 tolerated(0.17) benign(0.232) TCGA-22-5472-01 21 31864270 31864270 G T KRTAP19-3 Missense_Mutation p.S2R 0.32 deleterious_low_confidence(0) unknown(0) TCGA-22-5472-01 22 18301125 18301125 G A MICAL3 Silent p.S1434S 0.26 TCGA-22-5472-01 22 21107265 21107265 C A PI4KA Silent p.L971L 0.15 TCGA-22-5472-01 22 26164321 26164321 G C MYO18B Missense_Mutation p.R146S 0.32 deleterious_low_confidence(0) possibly_damaging(0.818) TCGA-22-5472-01 22 29938946 29938946 C A THOC5 Splice_Site p.X119_splice 0.28 TCGA-22-5472-01 22 30772728 30772728 C A CCDC157 Silent p.P751P 0.29 TCGA-22-5472-01 22 31008891 31008891 C A TCN2 Missense_Mutation p.Q97K 0.18 tolerated(0.06) benign(0.001) TCGA-22-5472-01 22 31688413 31688413 C A PIK3IP1 5'UTR 0.29 TCGA-22-5472-01 22 32587046 32587046 C A RFPL2 Nonsense_Mutation p.G284* 0.26 TCGA-22-5472-01 22 36649994 36649994 G T APOL1 5'UTR 0.19 TCGA-22-5472-01 22 36876629 36876629 G T TXN2 Missense_Mutation p.H86N 0.21 deleterious(0.01) probably_damaging(0.987) TCGA-22-5472-01 22 39824059 39824059 C A TAB1 Missense_Mutation p.P393Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-22-5472-01 22 42084862 42084862 G T NHP2L1 5'UTR 0.44 TCGA-22-5472-01 22 42912112 42912112 C A RRP7A Missense_Mutation p.G83C 0.35 deleterious(0.02) probably_damaging(0.968) TCGA-22-5472-01 2 114256968 114256968 G T FOXD4L1 Missense_Mutation p.E45D 0.36 tolerated(0.15) benign(0.139) TCGA-22-5472-01 2 119604348 119604348 G T EN1 Silent p.A132A 0.42 TCGA-22-5472-01 2 122125228 122125228 G T CLASP1 Missense_Mutation p.N1274K 0.06 tolerated(0.11) benign(0.06) TCGA-22-5472-01 2 128378018 128378018 C A MYO7B Missense_Mutation p.P1142T 0.31 deleterious(0.02) probably_damaging(0.969) TCGA-22-5472-01 2 128378019 128378019 C A MYO7B Missense_Mutation p.P1142Q 0.32 deleterious(0.01) possibly_damaging(0.492) TCGA-22-5472-01 2 130878131 130878131 C A POTEF 5'UTR 0.29 TCGA-22-5472-01 2 138169226 138169226 C A THSD7B Missense_Mutation p.L915I 0.22 deleterious(0.02) possibly_damaging(0.567) TCGA-22-5472-01 2 152470912 152470912 C A NEB Missense_Mutation p.A3827S 0.25 probably_damaging(0.999) TCGA-22-5472-01 2 152470913 152470913 C A NEB Silent p.L3826L 0.25 TCGA-22-5472-01 2 159481410 159481410 C A PKP4 Silent p.A208A 0.16 TCGA-22-5472-01 2 162890069 162890069 G A DPP4 Missense_Mutation p.P290L 0.27 deleterious(0) probably_damaging(1) TCGA-22-5472-01 2 162890071 162890071 A G DPP4 Silent p.A289A 0.25 TCGA-22-5472-01 2 166535295 166535295 G T CSRNP3 Missense_Mutation p.V264F 0.28 deleterious(0) possibly_damaging(0.814) TCGA-22-5472-01 2 168114364 168114364 C T XIRP2 Intron 0.24 TCGA-22-5472-01 2 176856991 176856991 G T KIAA1715 Silent p.A75A 0.47 TCGA-22-5472-01 2 178481602 178481602 G T TTC30A Missense_Mutation p.Q610K 0.06 tolerated(0.4) benign(0.001) TCGA-22-5472-01 2 179451273 179451273 G T TTN Missense_Mutation p.P21452Q 0.25 TCGA-22-5472-01 2 179530162 179530162 G A TTN Silent p.V11995V 0.06 TCGA-22-5472-01 2 179604342 179604342 C A TTN Missense_Mutation p.V4540L 0.37 TCGA-22-5472-01 2 183066250 183066250 G A PDE1A Silent p.H363H 0.33 TCGA-22-5472-01 2 185800724 185800724 G T ZNF804A Missense_Mutation p.G201W 0.37 deleterious(0) probably_damaging(0.974) TCGA-22-5472-01 2 185802367 185802367 G T ZNF804A Missense_Mutation p.M748I 0.30 tolerated(0.4) benign(0.001) TCGA-22-5472-01 2 186670857 186670858 - A FSIP2 Frame_Shift_Ins p.K5700Efs*3 0.19 TCGA-22-5472-01 2 189901518 189901518 T C COL5A2 Missense_Mutation p.I1313V 0.48 unknown(0) TCGA-22-5472-01 2 190728610 190728610 C A PMS1 Missense_Mutation p.H666Q 0.30 tolerated(0.63) benign(0.003) TCGA-22-5472-01 2 202900498 202900498 C A FZD7 Silent p.A376A 0.08 TCGA-22-5472-01 2 204732710 204732710 G T CTLA4 Silent p.L15L 0.30 TCGA-22-5472-01 2 207615680 207615680 C G MDH1B Missense_Mutation p.V344L 0.22 tolerated(0.63) benign(0.012) TCGA-22-5472-01 2 219360482 219360482 C T USP37 Splice_Site p.X491_splice 0.30 TCGA-22-5472-01 2 220285264 220285264 G A DES Silent p.V261V 0.28 TCGA-22-5472-01 2 26462001 26462001 G T HADHA Nonsense_Mutation p.C26* 0.25 TCGA-22-5472-01 2 29375559 29375559 G - CLIP4 Frame_Shift_Del p.A344Hfs*6 0.26 TCGA-22-5472-01 2 33413798 33413798 T A LTBP1 Silent p.P527P 0.29 TCGA-22-5472-01 2 39025306 39025306 G T DHX57 3'UTR 0.31 TCGA-22-5472-01 2 54876329 54876329 C T SPTBN1 Splice_Site p.X1734_splice 0.18 TCGA-22-5472-01 2 55920888 55920888 G T PNPT1 Missense_Mutation p.P24Q 0.30 tolerated_low_confidence(0.24) benign(0.126) TCGA-22-5472-01 2 70502272 70502272 G T PCYOX1 Missense_Mutation p.G226C 0.25 deleterious(0) probably_damaging(0.999) TCGA-22-5472-01 2 85598601 85598601 C T ELMOD3 Missense_Mutation p.L175F 0.32 deleterious(0) probably_damaging(0.999) TCGA-22-5472-01 2 85628387 85628387 G C CAPG Silent p.L139L 0.28 TCGA-22-5472-01 2 90199101 90199101 G C IGKV1D-12 Missense_Mutation p.G88R 0.28 tolerated(0.05) possibly_damaging(0.48) TCGA-22-5472-01 2 90199102 90199102 G T IGKV1D-12 Missense_Mutation p.G88V 0.29 deleterious(0.02) possibly_damaging(0.584) TCGA-22-5472-01 2 95944749 95944749 G T PROM2 Silent p.V377V 0.39 TCGA-22-5472-01 2 96950236 96950236 G A SNRNP200 Silent p.L1418L 0.38 TCGA-22-5472-01 2 99767229 99767229 G T C2ORF15 Missense_Mutation p.G104W 0.26 deleterious_low_confidence(0) benign(0.048) TCGA-22-5472-01 3 108133140 108133140 G T MYH15 Missense_Mutation p.Q1382K 0.14 tolerated(0.06) benign(0.058) TCGA-22-5472-01 3 109026974 109026974 G T DPPA2 Nonsense_Mutation p.S188* 0.23 TCGA-22-5472-01 3 109052821 109052821 G T DPPA4 Nonsense_Mutation p.S25* 0.17 TCGA-22-5472-01 3 110852644 110852644 G T PVRL3 Missense_Mutation p.G411V 0.24 deleterious(0) probably_damaging(0.998) TCGA-22-5472-01 3 120461343 120461343 C A RABL3 Silent p.L4L 0.21 TCGA-22-5472-01 3 123166580 123166580 C A ADCY5 Silent p.L271L 0.22 TCGA-22-5472-01 3 124397053 124397053 C A KALRN Missense_Mutation p.H707N 0.23 tolerated(0.37) benign(0.003) TCGA-22-5472-01 3 127703158 127703158 A T KBTBD12 3'UTR 0.26 TCGA-22-5472-01 3 128780703 128780703 C A GP9 Missense_Mutation p.H41N 0.15 deleterious(0.01) benign(0.076) TCGA-22-5472-01 3 132215438 132215438 G T DNAJC13 Missense_Mutation p.G1363W 0.22 deleterious(0) probably_damaging(0.997) TCGA-22-5472-01 3 134277097 134277097 G T CEP63 Silent p.L527L 0.18 TCGA-22-5472-01 3 136664723 136664723 G T NCK1 Silent p.L175L 0.21 TCGA-22-5472-01 3 137843495 137843495 C A A4GNT Missense_Mutation p.V212F 0.24 deleterious(0) probably_damaging(0.976) TCGA-22-5472-01 3 142741433 142741434 GA T U2SURP Frame_Shift_Del p.R316Mfs*11 0.19 TCGA-22-5472-01 3 149095211 149095211 G T TM4SF1 Missense_Mutation p.H42N 0.40 tolerated(0.16) benign(0.02) TCGA-22-5472-01 3 157188205 157188205 C A VEPH1 Silent p.G84G 0.05 TCGA-22-5472-01 3 179592165 179592165 C T PEX5L Missense_Mutation p.A226T 0.14 tolerated_low_confidence(0.31) benign(0.003) TCGA-22-5472-01 3 183226026 183226026 G T KLHL6 Silent p.R244R 0.21 TCGA-22-5472-01 3 195295819 195295819 G T APOD Silent p.V174V 0.04 TCGA-22-5472-01 3 38620970 38620970 A C SCN5A Missense_Mutation p.V1082G 0.83 tolerated(0.39) benign(0.068) TCGA-22-5472-01 3 49449953 49449953 C A TCTA Missense_Mutation p.Q32K 0.38 tolerated(0.07) probably_damaging(0.932) TCGA-22-5472-01 4 119948592 119948592 A G SYNPO2 Silent p.A356A 0.58 TCGA-22-5472-01 4 123797552 123797552 G C FGF2 Missense_Mutation p.M218I 0.47 deleterious(0.02) probably_damaging(0.961) TCGA-22-5472-01 4 123838817 123838817 C A NUDT6 Missense_Mutation p.W94L 0.38 deleterious(0) probably_damaging(0.986) TCGA-22-5472-01 4 155508748 155508748 C T FGA Silent p.K142K 0.42 TCGA-22-5472-01 4 16258011 16258011 G T TAPT1-AS1 RNA 0.52 TCGA-22-5472-01 4 164087748 164087748 T C NAF1 Silent p.L44L 0.67 TCGA-22-5472-01 4 176594915 176594915 C A GPM6A Silent p.V101V 0.56 TCGA-22-5472-01 4 187517903 187517903 G T FAT1 Nonsense_Mutation p.S4264* 0.45 TCGA-22-5472-01 4 187538166 187538166 C A FAT1 Missense_Mutation p.C3023F 0.55 probably_damaging(0.997) TCGA-22-5472-01 4 3951192 3951192 G T FAM86EP Intron 0.40 TCGA-22-5472-01 4 47163480 47163480 G T GABRB1 Missense_Mutation p.G152V 0.56 deleterious(0) probably_damaging(1) TCGA-22-5472-01 4 47584003 47584003 C G ATP10D Missense_Mutation p.I1225M 0.08 tolerated(0.12) benign(0.439) TCGA-22-5472-01 4 57204811 57204811 T G AASDH Silent p.S1018S 0.30 TCGA-22-5472-01 5 11082905 11082905 G T CTNND2 Silent p.L897L 0.34 TCGA-22-5472-01 5 137514307 137514307 G T BRD8 5'UTR 0.41 TCGA-22-5472-01 5 140056393 140056393 G T HARS Missense_Mutation p.A347E 0.49 tolerated(0.63) benign(0.001) TCGA-22-5472-01 5 140580574 140580574 G T PCDHB11 Silent p.L409L 0.21 TCGA-22-5472-01 5 14331006 14331006 A G TRIO Silent p.A617A 0.30 TCGA-22-5472-01 5 147498010 147498010 C T SPINK5 Missense_Mutation p.A708V 0.06 deleterious(0.03) probably_damaging(0.944) TCGA-22-5472-01 5 150946862 150946862 C T FAT2 Missense_Mutation p.R544Q 0.57 benign(0.01) TCGA-22-5472-01 5 180166564 180166564 G T OR2Y1 Silent p.A165A 0.17 TCGA-22-5472-01 5 180419856 180419856 G T BTNL3 Missense_Mutation p.L31F 0.09 tolerated(0.17) possibly_damaging(0.884) TCGA-22-5472-01 5 19483489 19483489 A G CDH18 Silent p.H601H 0.38 TCGA-22-5472-01 5 37443371 37443371 G T WDR70 Missense_Mutation p.A195S 0.25 tolerated(0.15) possibly_damaging(0.679) TCGA-22-5472-01 5 38486041 38486041 G T LIFR Missense_Mutation p.Q793K 0.24 tolerated(0.86) benign(0.048) TCGA-22-5472-01 5 38919142 38919142 C A OSMR Silent p.V521V 0.17 TCGA-22-5472-01 5 52355737 52355737 G T ITGA2 Missense_Mutation p.G403C 0.19 deleterious(0) possibly_damaging(0.605) TCGA-22-5472-01 5 5464632 5464632 G T KIAA0947 Missense_Mutation p.G1729C 0.24 deleterious(0) probably_damaging(1) TCGA-22-5472-01 5 75427817 75427817 G T SV2C Missense_Mutation p.G81V 0.43 deleterious(0) probably_damaging(1) TCGA-22-5472-01 5 86672323 86672323 C T RASA1 Nonsense_Mutation p.R709* 0.62 TCGA-22-5472-01 6 111995730 111995730 C A FYN Silent p.L459L 0.26 TCGA-22-5472-01 6 111995731 111995731 A G FYN Missense_Mutation p.L459P 0.25 deleterious(0) probably_damaging(1) TCGA-22-5472-01 6 117622242 117622242 T A ROS1 Nonsense_Mutation p.R2210* 0.28 TCGA-22-5472-01 6 132967003 132967003 G C TAAR1 Missense_Mutation p.S47C 0.24 deleterious(0) possibly_damaging(0.829) TCGA-22-5472-01 6 139694334 139694334 G T CITED2 Missense_Mutation p.Q250K 0.29 deleterious(0) benign(0.184) TCGA-22-5472-01 6 145119013 145119013 G T UTRN Missense_Mutation p.L3044F 0.30 deleterious(0) probably_damaging(1) TCGA-22-5472-01 6 159653965 159653965 G T FNDC1 Silent p.T807T 0.25 TCGA-22-5472-01 6 2679591 2679591 G T MYLK4 Silent p.L270L 0.28 TCGA-22-5472-01 6 28094583 28094583 G T ZSCAN16 Missense_Mutation p.R137L 0.17 deleterious(0.04) benign(0) TCGA-22-5472-01 6 29640440 29640440 A T ZFP57 Missense_Mutation p.L483H 0.41 deleterious(0) probably_damaging(0.992) TCGA-22-5472-01 6 30899573 30899573 C A SFTA2 Splice_Site p.X21_splice 0.24 TCGA-22-5472-01 6 31079659 31079659 G T C6orf15 Silent p.A159A 0.42 TCGA-22-5472-01 6 32805735 32805735 G T TAP2 Silent p.A92A 0.24 TCGA-22-5472-01 6 33146095 33146095 G C COL11A2 Missense_Mutation p.P517R 0.32 probably_damaging(0.98) TCGA-22-5472-01 6 33281789 33281789 C A TAPBP Silent p.V10V 0.34 TCGA-22-5472-01 6 33639022 33639022 G T ITPR3 Silent p.L889L 0.10 TCGA-22-5472-01 6 37138631 37138631 C A PIM1 Silent p.G55G 0.19 TCGA-22-5472-01 6 37611679 37611679 C A MDGA1 Silent p.L814L 0.41 TCGA-22-5472-01 6 39285661 39285661 G T KCNK16 Silent p.G132G 0.35 TCGA-22-5472-01 6 43126659 43126659 A G PTK7 Silent p.R950R 0.23 TCGA-22-5472-01 6 55924040 55924040 C A COL21A1 Missense_Mutation p.G870V 0.15 deleterious(0) benign(0.346) TCGA-22-5472-01 6 57012772 57012772 G C ZNF451 Missense_Mutation p.S630T 0.33 deleterious(0.03) probably_damaging(0.993) TCGA-22-5472-01 6 90435040 90435040 C A MDN1 Nonsense_Mutation p.E1850* 0.24 TCGA-22-5472-01 6 90504480 90504480 G C MDN1 Missense_Mutation p.Q124E 0.11 benign(0.235) TCGA-22-5472-01 6 90660400 90660400 G T BACH2 Silent p.P475P 0.28 TCGA-22-5472-01 6 97681743 97681743 C T MMS22L Silent p.K432K 0.29 TCGA-22-5472-01 7 100552385 100552385 C T MUC3A Missense_Mutation p.T379I 0.21 deleterious(0) benign(0.327) TCGA-22-5472-01 7 100817922 100817922 A G NAT16 Missense_Mutation p.V56A 0.16 tolerated(0.17) benign(0.225) TCGA-22-5472-01 7 105177043 105177043 T C RINT1 Silent p.S40S 0.03 TCGA-22-5472-01 7 107002556 107002556 C A COG5 Splice_Site p.X348_splice 0.26 TCGA-22-5472-01 7 107746981 107746981 C T LAMB4 Missense_Mutation p.E210K 0.32 tolerated(0.06) probably_damaging(0.942) TCGA-22-5472-01 7 120780971 120780971 A T CPED1 Missense_Mutation p.Y597F 0.31 deleterious(0.01) probably_damaging(0.977) TCGA-22-5472-01 7 130021492 130021492 G T CPA1 Missense_Mutation p.A57S 0.11 tolerated(1) benign(0.02) TCGA-22-5472-01 7 131853253 131853253 G T PLXNA4 Missense_Mutation p.L1366M 0.49 deleterious(0) probably_damaging(1) TCGA-22-5472-01 7 132470384 132470384 C A CHCHD3 3'UTR 0.42 TCGA-22-5472-01 7 137270076 137270076 G T DGKI Missense_Mutation p.P481H 0.32 deleterious(0) probably_damaging(1) TCGA-22-5472-01 7 137304674 137304674 C A DGKI Missense_Mutation p.V297L 0.38 tolerated(0.08) probably_damaging(0.997) TCGA-22-5472-01 7 146829579 146829579 G T CNTNAP2 Missense_Mutation p.M442I 0.30 tolerated(0.15) benign(0.008) TCGA-22-5472-01 7 150069192 150069192 G T REPIN1 Missense_Mutation p.G345C 0.33 deleterious(0) probably_damaging(1) TCGA-22-5472-01 7 150493603 150493603 G T TMEM176B Missense_Mutation p.Q19K 0.19 tolerated(0.09) possibly_damaging(0.504) TCGA-22-5472-01 7 18788634 18788634 C T HDAC9 Missense_Mutation p.A639V 0.44 tolerated(1) benign(0.002) TCGA-22-5472-01 7 23300105 23300107 AGA - GPNMB In_Frame_Del p.K245del 0.38 TCGA-22-5472-01 7 30066010 30066010 G T FKBP14 Missense_Mutation p.H39N 0.26 tolerated(0.43) benign(0.112) TCGA-22-5472-01 7 44560416 44560416 G T NPC1L1 Silent p.G1028G 0.39 TCGA-22-5472-01 7 48319311 48319311 C A ABCA13 Silent p.S2840S 0.38 TCGA-22-5472-01 7 48338050 48338050 A G ABCA13 Missense_Mutation p.H3096R 0.31 benign(0.002) TCGA-22-5472-01 7 5352366 5352366 T A TNRC18 Missense_Mutation p.K2719M 0.47 unknown(0) TCGA-22-5472-01 7 65705968 65705968 G T TPST1 Missense_Mutation p.G186C 0.32 deleterious(0) probably_damaging(1) TCGA-22-5472-01 7 72657466 72657466 C A GTF2IRD2P1 RNA 0.21 TCGA-22-5472-01 7 72657467 72657467 C A GTF2IRD2P1 RNA 0.19 TCGA-22-5472-01 7 75051285 75051285 G T POM121C Silent p.S750S 0.26 TCGA-22-5472-01 7 75171269 75171269 G T HIP1 Missense_Mutation p.T974K 0.06 deleterious(0.04) probably_damaging(0.926) TCGA-22-5472-01 7 75621561 75621561 G T STYXL1 3'Flank 0.22 TCGA-22-5472-01 7 82764257 82764257 G T PCLO Missense_Mutation p.P870Q 0.30 unknown(0) TCGA-22-5472-01 7 86468253 86468253 G A GRM3 Missense_Mutation p.G475S 0.52 tolerated(0.31) benign(0.001) TCGA-22-5472-01 7 92099215 92099215 G T ERVW-1 Missense_Mutation p.H161N 0.50 tolerated(0.31) benign(0.146) TCGA-22-5472-01 7 99526808 99526808 C A GJC3 Missense_Mutation p.V146F 0.30 deleterious(0.02) possibly_damaging(0.836) TCGA-22-5472-01 7 99786584 99786584 C A STAG3 Silent p.L220L 0.22 TCGA-22-5472-01 8 113988090 113988090 C A CSMD3 Nonsense_Mutation p.E440* 0.26 TCGA-22-5472-01 8 120628554 120628554 T C ENPP2 Missense_Mutation p.H243R 0.26 deleterious(0.03) benign(0.003) TCGA-22-5472-01 8 139674273 139674273 G T COL22A1 Missense_Mutation p.D1080E 0.26 unknown(0) TCGA-22-5472-01 8 141675018 141675018 C T PTK2 Missense_Mutation p.E995K 0.43 deleterious(0) possibly_damaging(0.702) TCGA-22-5472-01 8 145739739 145739739 G A RECQL4 Missense_Mutation p.A571V 0.25 deleterious(0.01) possibly_damaging(0.578) TCGA-22-5472-01 8 22056554 22056554 C T BMP1 Intron 0.18 TCGA-22-5472-01 8 22458472 22458472 G T C8orf58 Missense_Mutation p.A40S 0.65 tolerated(0.23) benign(0.176) TCGA-22-5472-01 8 27358525 27358525 C A EPHX2 Missense_Mutation p.Q62K 0.32 deleterious(0.03) benign(0.178) TCGA-22-5472-01 8 28385175 28385175 G T FZD3 Missense_Mutation p.G300C 0.15 deleterious(0) probably_damaging(0.961) TCGA-22-5472-01 8 30623785 30623785 C A UBXN8 RNA 0.33 TCGA-22-5472-01 8 30889972 30889972 C A PURG Silent p.L109L 0.19 TCGA-22-5472-01 8 38005748 38005748 G C STAR Missense_Mutation p.N92K 0.35 deleterious(0.03) benign(0.026) TCGA-22-5472-01 8 38175466 38175466 C T WHSC1L1 Intron 0.24 TCGA-22-5472-01 8 39613342 39613342 T A ADAM2 Missense_Mutation p.S568C 0.46 deleterious(0.01) possibly_damaging(0.886) TCGA-22-5472-01 8 41166484 41166484 C A SFRP1 Silent p.L65L 0.50 TCGA-22-5472-01 8 41519387 41519387 C A ANK1 Intron 0.27 TCGA-22-5472-01 8 52321195 52321195 C A PXDNL Missense_Mutation p.V997F 0.50 deleterious(0) possibly_damaging(0.493) TCGA-22-5472-01 8 65527693 65527693 G T CYP7B1 Missense_Mutation p.A316E 0.33 tolerated(0.23) benign(0.034) TCGA-22-5472-01 8 72984099 72984099 C A TRPA1 Missense_Mutation p.V39F 0.20 tolerated(0.06) benign(0.006) TCGA-22-5472-01 8 74464340 74464340 G T STAU2 Silent p.A479A 0.25 TCGA-22-5472-01 9 123945598 123945598 C A RAB14 Nonsense_Mutation p.E144* 0.28 TCGA-22-5472-01 9 125281491 125281491 G T OR1J4 Missense_Mutation p.Q24H 0.30 deleterious_low_confidence(0.01) benign(0.043) TCGA-22-5472-01 9 130885221 130885221 G C PTGES2 Silent p.L293L 0.16 TCGA-22-5472-01 9 135073791 135073791 C A NTNG2 Missense_Mutation p.R218S 0.39 deleterious(0) probably_damaging(1) TCGA-22-5472-01 9 137772699 137772699 G T FCN2 Missense_Mutation p.G11V 0.20 tolerated(0.18) benign(0.005) TCGA-22-5472-01 9 3263017 3263017 G T RFX3 Missense_Mutation p.A508E 0.34 deleterious(0) probably_damaging(0.947) TCGA-22-5472-01 9 4685026 4685026 C A CDC37L1 Silent p.A94A 0.45 TCGA-22-5472-01 9 69117823 69117823 A T PGM5P2 RNA 0.24 TCGA-22-5472-01 9 75526976 75526976 G T ALDH1A1 Silent p.A366A 0.06 TCGA-22-5472-01 9 80049351 80049351 G T GNA14 Missense_Mutation p.Q133K 0.27 tolerated(0.98) benign(0) TCGA-22-5472-01 9 96859732 96859732 C A PTPDC1 Missense_Mutation p.T293N 0.10 deleterious(0.01) benign(0.257) TCGA-22-5472-01 X 123654528 123654528 G T TENM1 Nonsense_Mutation p.S1047* 0.76 TCGA-22-5472-01 X 129139248 129139248 G T BCORL1 Missense_Mutation p.W14L 0.57 unknown(0) TCGA-22-5472-01 X 141291533 141291533 C T MAGEC2 Missense_Mutation p.E81K 0.17 tolerated(0.08) benign(0.033) TCGA-22-5472-01 X 14861742 14861742 C A FANCB Missense_Mutation p.A843S 0.69 deleterious(0.02) benign(0.273) TCGA-22-5472-01 X 153627841 153627841 C A RPL10 Silent p.R32R 0.07 TCGA-22-5472-01 X 153940624 153940624 G T GAB3 Missense_Mutation p.H317N 0.58 deleterious(0) possibly_damaging(0.811) TCGA-22-5472-01 X 28807481 28807481 C A IL1RAPL1 Missense_Mutation p.H7Q 0.63 deleterious_low_confidence(0.01) benign(0.007) TCGA-22-5472-01 X 65247899 65247899 G T VSIG4 Silent p.P250P 0.56 TCGA-22-5472-01 X 7177396 7177396 G T STS Missense_Mutation p.W135L 0.62 deleterious(0) probably_damaging(1) TCGA-22-5473-01 10 100503730 100503730 G A HPSE2 Missense_Mutation p.P232S 0.23 tolerated(0.26) benign(0.11) TCGA-22-5473-01 10 101578643 101578643 G T ABCC2 Missense_Mutation p.A790S 0.36 deleterious(0) possibly_damaging(0.718) TCGA-22-5473-01 10 101835789 101835789 G A CPN1 Missense_Mutation p.S100L 0.26 deleterious(0.03) possibly_damaging(0.711) TCGA-22-5473-01 10 101964284 101964284 C A CHUK Nonsense_Mutation p.E496* 0.28 TCGA-22-5473-01 10 103531278 103531278 C T FGF8 Missense_Mutation p.R129Q 0.27 tolerated(0.16) benign(0.005) TCGA-22-5473-01 10 103550821 103550821 G A MGEA5 Silent p.L762L 0.30 TCGA-22-5473-01 10 105218594 105218594 C T CALHM1 5'UTR 0.21 TCGA-22-5473-01 10 107005329 107005329 C A SORCS3 Silent p.S966S 0.26 TCGA-22-5473-01 10 107006977 107006977 A G SORCS3 Missense_Mutation p.E998G 0.22 deleterious(0.03) benign(0.056) TCGA-22-5473-01 10 114136047 114136047 C T ACSL5 5'UTR 0.26 TCGA-22-5473-01 10 115348625 115348625 G C NRAP 3'UTR 0.17 TCGA-22-5473-01 10 115374675 115374675 G A NRAP Nonsense_Mutation p.R1037* 0.25 TCGA-22-5473-01 10 116195907 116195907 G A ABLIM1 3'UTR 0.20 TCGA-22-5473-01 10 117075194 117075194 C A ATRNL1 Silent p.T995T 0.26 TCGA-22-5473-01 10 118202596 118202596 C - PNLIPRP3 Frame_Shift_Del p.Q79Kfs*15 0.31 TCGA-22-5473-01 10 118318783 118318783 A T PNLIP Missense_Mutation p.S350C 0.29 deleterious(0.02) possibly_damaging(0.685) TCGA-22-5473-01 10 118891636 118891636 C A VAX1 3'Flank 0.41 TCGA-22-5473-01 10 120353838 120353838 C G PRLHR Missense_Mutation p.A307P 0.25 deleterious(0.01) probably_damaging(0.983) TCGA-22-5473-01 10 122618251 122618251 G C WDR11 Missense_Mutation p.D99H 0.21 deleterious(0) probably_damaging(1) TCGA-22-5473-01 10 122664830 122664830 G A WDR11 Splice_Site p.X1065_splice 0.32 TCGA-22-5473-01 10 126660603 126660603 G A ZRANB1 Missense_Mutation p.E358K 0.29 tolerated(0.06) benign(0.096) TCGA-22-5473-01 10 129911827 129911827 G A MKI67 Missense_Mutation p.S507F 0.28 deleterious(0) probably_damaging(0.998) TCGA-22-5473-01 10 131762049 131762049 G T EBF3 5'UTR 0.29 TCGA-22-5473-01 10 134006222 134006222 G T DPYSL4 Silent p.L63L 0.42 TCGA-22-5473-01 10 134996995 134996995 G A KNDC1 Splice_Site p.X169_splice 0.42 TCGA-22-5473-01 10 135053206 135053207 - G VENTX Frame_Shift_Ins p.A91Gfs*174 0.24 TCGA-22-5473-01 10 15089255 15089255 G C OLAH 5'UTR 0.15 TCGA-22-5473-01 10 24813693 24813693 G A KIAA1217 Silent p.E966E 0.68 TCGA-22-5473-01 10 26505666 26505666 G A GAD2 5'UTR 0.74 TCGA-22-5473-01 10 28527580 28527580 T C MPP7 5'UTR 0.80 TCGA-22-5473-01 10 30615386 30615386 G A MTPAP Missense_Mutation p.S320F 0.14 deleterious(0) probably_damaging(0.928) TCGA-22-5473-01 10 30918578 30918578 G A LYZL2 Silent p.S19S 0.69 TCGA-22-5473-01 10 33103371 33103371 G C C10ORF68 Missense_Mutation p.K328N 0.12 deleterious(0.02) benign(0.075) TCGA-22-5473-01 10 37520509 37520509 A T ANKRD30A 3'UTR 0.59 TCGA-22-5473-01 10 38654469 38654469 G A HSD17B7P2 RNA 0.85 TCGA-22-5473-01 10 43650712 43650712 G C CSGALNACT2 Missense_Mutation p.D39H 0.11 tolerated(0.05) possibly_damaging(0.868) TCGA-22-5473-01 10 43694588 43694588 G A RASGEF1A Missense_Mutation p.R302W 0.81 deleterious(0) possibly_damaging(0.893) TCGA-22-5473-01 10 60566341 60566341 C T BICC1 Intron 0.27 TCGA-22-5473-01 10 61112201 61112201 T A FAM13C Silent p.A51A 0.13 TCGA-22-5473-01 10 62023652 62023652 C T ANK3 Missense_Mutation p.D214N 0.28 probably_damaging(0.999) TCGA-22-5473-01 10 63212905 63212905 G T TMEM26 5'UTR 0.29 TCGA-22-5473-01 10 63759929 63759929 C G ARID5B Missense_Mutation p.I194M 0.28 deleterious(0.05) possibly_damaging(0.888) TCGA-22-5473-01 10 68040264 68040264 T C CTNNA3 Silent p.T616T 0.27 TCGA-22-5473-01 10 68686899 68686899 A C LRRTM3 Missense_Mutation p.K75N 0.25 tolerated(0.26) benign(0.021) TCGA-22-5473-01 10 72614558 72614558 C T SGPL1 Nonsense_Mutation p.Q119* 0.29 TCGA-22-5473-01 10 73053268 73053268 G A UNC5B Missense_Mutation p.E627K 0.28 deleterious(0.02) benign(0.005) TCGA-22-5473-01 10 73544071 73544071 G A CDH23 Missense_Mutation p.G1804E 0.34 deleterious(0) probably_damaging(0.988) TCGA-22-5473-01 10 78880778 78880778 C T KCNMA1 Silent p.L279L 0.18 TCGA-22-5473-01 10 8100519 8100519 C A GATA3 Missense_Mutation p.P165T 0.73 deleterious(0.03) possibly_damaging(0.735) TCGA-22-5473-01 10 86004820 86004820 G T RGR 5'UTR 0.36 TCGA-22-5473-01 10 930416 930416 G A LARP4B Nonsense_Mutation p.Q38* 0.11 TCGA-22-5473-01 10 93252127 93252127 G T HECTD2 Missense_Mutation p.D440Y 0.36 deleterious(0) probably_damaging(0.996) TCGA-22-5473-01 10 98744488 98744488 A T C10orf12 Missense_Mutation p.H1114L 0.25 deleterious(0.03) possibly_damaging(0.733) TCGA-22-5473-01 11 10052684 10052684 T C SBF2 Missense_Mutation p.K105E 0.61 tolerated(1) benign(0) TCGA-22-5473-01 11 101833366 101833366 A G KIAA1377 Missense_Mutation p.K534E 0.59 tolerated(0.29) benign(0.081) TCGA-22-5473-01 11 102464193 102464193 G C MMP20 Missense_Mutation p.F408L 0.27 deleterious(0.01) probably_damaging(0.981) TCGA-22-5473-01 11 102991224 102991224 G T DYNC2H1 Missense_Mutation p.A350S 0.61 benign(0.001) TCGA-22-5473-01 11 104874003 104874003 C T CASP5 Missense_Mutation p.E194K 0.27 tolerated(0.09) possibly_damaging(0.686) TCGA-22-5473-01 11 104912298 104912298 A G CARD16 Silent p.S141S 0.27 TCGA-22-5473-01 11 108098502 108098502 G A ATM Splice_Site p.X25_splice 0.17 TCGA-22-5473-01 11 113608312 113608312 G C ZW10 Silent p.G666G 0.27 TCGA-22-5473-01 11 113857404 113857404 C T HTR3A Silent p.I296I 0.30 TCGA-22-5473-01 11 116729308 116729308 G A SIK3 Missense_Mutation p.T852I 0.34 deleterious_low_confidence(0.02) benign(0.1) TCGA-22-5473-01 11 118376003 118376003 C G KMT2A Silent p.L3132L 0.03 TCGA-22-5473-01 11 119045386 119045386 G T NLRX1 Silent p.L358L 0.57 TCGA-22-5473-01 11 119045387 119045387 G T NLRX1 Nonsense_Mutation p.E359* 0.56 TCGA-22-5473-01 11 120096498 120096498 C T OAF Silent p.L120L 0.26 TCGA-22-5473-01 11 121028649 121028649 G C TECTA Missense_Mutation p.E1469Q 0.04 tolerated(0.33) possibly_damaging(0.565) TCGA-22-5473-01 11 123900989 123900989 C G OR10G8 Missense_Mutation p.I220M 0.26 deleterious(0) probably_damaging(0.96) TCGA-22-5473-01 11 124294594 124294594 G T OR8B4 Silent p.P58P 0.31 TCGA-22-5473-01 11 124294596 124294596 G C OR8B4 Missense_Mutation p.P58A 0.29 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-22-5473-01 11 129321282 129321282 C A BARX2 Silent p.P275P 0.57 TCGA-22-5473-01 11 130064581 130064581 C T ST14 Silent p.P354P 0.60 TCGA-22-5473-01 11 14541906 14541906 G A PSMA1 Intron 0.63 TCGA-22-5473-01 11 1862105 1862105 C G TNNI2 Missense_Mutation p.D81E 0.12 deleterious(0) possibly_damaging(0.713) TCGA-22-5473-01 11 1959780 1959780 G T TNNT3 3'UTR 0.40 TCGA-22-5473-01 11 20388874 20388874 C G HTATIP2 Intron 0.74 TCGA-22-5473-01 11 20676280 20676280 C T SLC6A5 Missense_Mutation p.P754S 0.53 deleterious(0.03) probably_damaging(0.968) TCGA-22-5473-01 11 21556041 21556041 G C NELL1 Silent p.L589L 0.51 TCGA-22-5473-01 11 22399344 22399344 C A SLC17A6 3'UTR 0.33 TCGA-22-5473-01 11 26663549 26663549 G T ANO3 Nonsense_Mutation p.G750* 0.69 TCGA-22-5473-01 11 26743234 26743234 C T SLC5A12 Missense_Mutation p.D10N 0.18 deleterious(0) probably_damaging(0.998) TCGA-22-5473-01 11 32674691 32674691 T A CCDC73 Missense_Mutation p.K306M 0.57 deleterious(0) probably_damaging(0.997) TCGA-22-5473-01 11 33566887 33566887 G T KIAA1549L Silent p.L819L 0.55 TCGA-22-5473-01 11 35747495 35747495 G A TRIM44 Missense_Mutation p.M257I 0.53 tolerated(0.18) unknown(0) TCGA-22-5473-01 11 40136617 40136617 C T LRRC4C Missense_Mutation p.G409D 0.25 deleterious(0) probably_damaging(1) TCGA-22-5473-01 11 40136954 40136954 G T LRRC4C Missense_Mutation p.H297N 0.50 tolerated(0.15) benign(0.072) TCGA-22-5473-01 11 428392 428392 G A ANO9 Silent p.I396I 0.26 TCGA-22-5473-01 11 46700550 46700550 G C ARHGAP1 3'UTR 0.35 TCGA-22-5473-01 11 55432923 55432923 G T OR4C6 Missense_Mutation p.G94V 0.53 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-22-5473-01 11 55433293 55433293 G T OR4C6 Silent p.T217T 0.26 TCGA-22-5473-01 11 55433470 55433471 CA - OR4C6 Frame_Shift_Del p.P278Hfs*? 0.31 TCGA-22-5473-01 11 55606570 55606570 A T OR5D16 Missense_Mutation p.I115F 0.29 tolerated(1) benign(0) TCGA-22-5473-01 11 55735665 55735665 A G OR10AG1 Missense_Mutation p.M92T 0.54 tolerated(0.06) benign(0.064) TCGA-22-5473-01 11 55999618 55999618 C A OR5T2 Missense_Mutation p.Q348H 0.64 tolerated(0.55) benign(0.002) TCGA-22-5473-01 11 56468028 56468028 C A OR9G1 Missense_Mutation p.H55Q 0.21 deleterious(0.05) benign(0.034) TCGA-22-5473-01 11 57117248 57117248 A T P2RX3 Missense_Mutation p.N194I 0.55 deleterious(0.02) benign(0.353) TCGA-22-5473-01 11 5842405 5842405 C A OR52N2 Silent p.A280A 0.65 TCGA-22-5473-01 11 5862858 5862858 A G OR52E6 Silent p.N90N 0.52 TCGA-22-5473-01 11 58979633 58979633 C T MPEG1 Missense_Mutation p.V236M 0.20 deleterious(0.04) benign(0.143) TCGA-22-5473-01 11 58980144 58980144 C G MPEG1 Missense_Mutation p.L65F 0.62 deleterious(0.04) possibly_damaging(0.764) TCGA-22-5473-01 11 60620835 60620835 G A PTGDR2 Silent p.L121L 0.17 TCGA-22-5473-01 11 62910852 62910852 C A SLC22A24 Nonsense_Mutation p.E134* 0.54 TCGA-22-5473-01 11 64434752 64434752 G A NRXN2 Missense_Mutation p.H590Y 0.26 deleterious(0) benign(0.03) TCGA-22-5473-01 11 64677516 64677516 A C ATG2A Missense_Mutation p.L620R 0.57 deleterious(0.02) probably_damaging(0.989) TCGA-22-5473-01 11 65107889 65107889 G A DPF2 Silent p.E22E 0.28 TCGA-22-5473-01 11 65147353 65147353 A G SLC25A45 Silent p.I46I 0.25 TCGA-22-5473-01 11 66192395 66192395 C - NPAS4 Frame_Shift_Del p.P680Lfs*7 0.27 TCGA-22-5473-01 11 66457282 66457282 G A SPTBN2 Silent p.A1981A 0.20 TCGA-22-5473-01 11 67177104 67177104 G A TBC1D10C Missense_Mutation p.R407Q 0.36 tolerated(0.07) benign(0.285) TCGA-22-5473-01 11 67202553 67202553 G T RPS6KB2 Silent p.P454P 0.44 TCGA-22-5473-01 11 68747787 68747787 G A MRGPRD Silent p.V223V 0.16 TCGA-22-5473-01 11 6942481 6942482 - T OR2D3 Frame_Shift_Ins p.A85Cfs*8 0.28 TCGA-22-5473-01 11 7067933 7067933 C A NLRP14 Missense_Mutation p.L665I 0.26 deleterious(0.02) probably_damaging(0.931) TCGA-22-5473-01 11 7111393 7111393 C A RBMXL2 Missense_Mutation p.R348S 0.34 deleterious(0.03) benign(0) TCGA-22-5473-01 11 72492119 72492120 CT - STARD10 Frame_Shift_Del p.E36Vfs*2 0.30 TCGA-22-5473-01 11 82443575 82443575 G T FAM181B Nonsense_Mutation p.Y399* 0.69 TCGA-22-5473-01 11 89424640 89424640 T A FOLH1B RNA 0.46 TCGA-22-5473-01 11 9167307 9167307 G A DENND5A Silent p.F971F 0.09 TCGA-22-5473-01 11 94180480 94180480 G A MRE11A Missense_Mutation p.S563L 0.07 tolerated(0.19) benign(0.001) TCGA-22-5473-01 11 95826149 95826149 T G MAML2 Missense_Mutation p.Q349P 0.51 probably_damaging(0.986) TCGA-22-5473-01 12 100796216 100796216 G T SLC17A8 Nonsense_Mutation p.E288* 0.31 TCGA-22-5473-01 12 101493391 101493391 G A ANO4 Missense_Mutation p.R646Q 0.26 tolerated(0.06) benign(0.064) TCGA-22-5473-01 12 101603693 101603693 G T SLC5A8 5'UTR 0.36 TCGA-22-5473-01 12 108589638 108589638 G T WSCD2 Missense_Mutation p.R10L 0.35 deleterious(0) probably_damaging(0.999) TCGA-22-5473-01 12 112374620 112374620 T G TMEM116 Missense_Mutation p.H155P 0.29 deleterious(0) possibly_damaging(0.528) TCGA-22-5473-01 12 112666057 112666057 C T HECTD4 Silent p.L2084L 0.24 TCGA-22-5473-01 12 112670832 112670832 C T HECTD4 Silent p.V1845V 0.56 TCGA-22-5473-01 12 115117424 115117424 G C TBX3 Silent p.P250P 0.21 TCGA-22-5473-01 12 117724063 117724063 G C NOS1 Missense_Mutation p.S379C 0.07 deleterious(0.02) probably_damaging(0.955) TCGA-22-5473-01 12 118298109 118298109 T C KSR2 Missense_Mutation p.K103R 0.29 tolerated(0.39) benign(0.055) TCGA-22-5473-01 12 124156113 124156113 G C TCTN2 Missense_Mutation p.D48H 0.28 deleterious(0.05) benign(0.17) TCGA-22-5473-01 12 124303765 124303765 G T DNAH10 Missense_Mutation p.G1205V 0.10 probably_damaging(1) TCGA-22-5473-01 12 124846713 124846713 C T NCOR2 Missense_Mutation p.R1020Q 0.60 benign(0.095) TCGA-22-5473-01 12 129442087 129442087 C A GLT1D1 Intron 0.40 TCGA-22-5473-01 12 15103648 15103648 C G ARHGDIB 5'UTR 0.15 TCGA-22-5473-01 12 15654883 15654883 G C PTPRO Missense_Mutation p.E331Q 0.08 tolerated_low_confidence(0.49) benign(0.013) TCGA-22-5473-01 12 1949924 1949924 C G CACNA2D4 Missense_Mutation p.K844N 0.10 tolerated(0.51) benign(0.002) TCGA-22-5473-01 12 20801636 20801636 C T PDE3A Silent p.N860N 0.46 TCGA-22-5473-01 12 20854340 20854340 G T SLCO1C1 Missense_Mutation p.R73M 0.48 deleterious(0) probably_damaging(0.999) TCGA-22-5473-01 12 20890118 20890118 G - SLCO1C1 Frame_Shift_Del p.E488Nfs*50 0.40 TCGA-22-5473-01 12 22826547 22826547 G A ETNK1 Missense_Mutation p.E389K 0.12 tolerated(0.14) benign(0.114) TCGA-22-5473-01 12 30884403 30884403 C A CAPRIN2 Missense_Mutation p.G312C 0.22 deleterious(0) probably_damaging(0.967) TCGA-22-5473-01 12 332341 332341 C A SLC6A13 Silent p.L457L 0.51 TCGA-22-5473-01 12 40153744 40153744 T C SLC2A13 3'UTR 0.33 TCGA-22-5473-01 12 41967593 41967593 G - PDZRN4 Frame_Shift_Del p.D1005Tfs*4 0.31 TCGA-22-5473-01 12 45173518 45173518 C A NELL2 Missense_Mutation p.K228N 0.34 tolerated(0.16) possibly_damaging(0.614) TCGA-22-5473-01 12 45567332 45567332 C T PLEKHA8P1 RNA 0.18 TCGA-22-5473-01 12 46123697 46123697 C G ARID2 Missense_Mutation p.F26L 0.13 deleterious(0) probably_damaging(0.982) TCGA-22-5473-01 12 46244950 46244950 A C ARID2 Missense_Mutation p.Q1015P 0.19 deleterious_low_confidence(0.05) benign(0.342) TCGA-22-5473-01 12 48251014 48251014 C T VDR Missense_Mutation p.D211N 0.14 tolerated(0.46) benign(0.098) TCGA-22-5473-01 12 48251018 48251018 C G VDR Silent p.V209V 0.16 TCGA-22-5473-01 12 49439860 49439860 C G KMT2D Missense_Mutation p.V1561L 0.15 possibly_damaging(0.471) TCGA-22-5473-01 12 49441824 49441824 C A KMT2D Missense_Mutation p.G1387V 0.20 probably_damaging(1) TCGA-22-5473-01 12 52115631 52115631 A C SCN8A Missense_Mutation p.N646T 0.04 deleterious(0.02) probably_damaging(0.971) TCGA-22-5473-01 12 52306283 52306283 G C ACVRL1 Missense_Mutation p.G9R 0.12 tolerated_low_confidence(0.07) benign(0.02) TCGA-22-5473-01 12 52761001 52761001 C - KRT85 Frame_Shift_Del p.R65Gfs*2 0.44 TCGA-22-5473-01 12 52793928 52793928 G A KRT82 Silent p.I261I 0.15 TCGA-22-5473-01 12 54905629 54905629 A G NCKAP1L Missense_Mutation p.I260V 0.21 tolerated(0.06) possibly_damaging(0.823) TCGA-22-5473-01 12 55945428 55945428 A T OR6C4 Missense_Mutation p.I140L 0.18 tolerated_low_confidence(0.46) benign(0.001) TCGA-22-5473-01 12 57863408 57863408 C T GLI1 Silent p.L501L 0.20 TCGA-22-5473-01 12 70918263 70918263 C G PTPRB Missense_Mutation p.E2205Q 0.20 deleterious(0.04) possibly_damaging(0.835) TCGA-22-5473-01 12 70931979 70931979 C A PTPRB Missense_Mutation p.D1968Y 0.16 deleterious(0) probably_damaging(0.981) TCGA-22-5473-01 12 70953211 70953211 T C PTPRB Silent p.P1542P 0.14 TCGA-22-5473-01 12 71898442 71898442 C A LGR5 Silent p.P87P 0.16 TCGA-22-5473-01 12 72680712 72680712 C A TRHDE Missense_Mutation p.T344N 0.28 tolerated(0.3) possibly_damaging(0.751) TCGA-22-5473-01 12 7640016 7640016 A G CD163 Silent p.P663P 0.56 TCGA-22-5473-01 12 78388627 78388627 C A NAV3 Missense_Mutation p.A239E 0.26 tolerated(0.06) benign(0.406) TCGA-22-5473-01 12 7882195 7882195 T C CLEC4C Missense_Mutation p.I213M 0.66 deleterious(0.01) possibly_damaging(0.573) TCGA-22-5473-01 13 101833626 101833626 G C NALCN Intron 0.51 TCGA-22-5473-01 13 102231757 102231757 G T ITGBL1 Missense_Mutation p.G236C 0.43 deleterious(0) probably_damaging(0.993) TCGA-22-5473-01 13 21396422 21396422 G A XPO4 Nonsense_Mutation p.R283* 0.32 TCGA-22-5473-01 13 25285772 25285772 A T ATP12A 3'UTR 0.47 TCGA-22-5473-01 13 25367445 25367445 G A RNF17 Missense_Mutation p.D401N 0.03 deleterious(0) probably_damaging(0.956) TCGA-22-5473-01 13 25457211 25457211 C G CENPJ 3'UTR 0.25 TCGA-22-5473-01 13 26145831 26145831 G A ATP8A2 Splice_Site p.X554_splice 0.39 TCGA-22-5473-01 13 26974588 26974588 A C CDK8 Splice_Site p.X312_splice 0.28 TCGA-22-5473-01 13 38923997 38923997 G C UFM1 5'Flank 0.23 TCGA-22-5473-01 13 52951735 52951735 C G THSD1 Silent p.L790L 0.05 TCGA-22-5473-01 13 53254242 53254242 C G SUGT1 Missense_Mutation p.I316M 0.24 deleterious(0) probably_damaging(0.997) TCGA-22-5473-01 13 58207128 58207128 C T PCDH17 Missense_Mutation p.R150C 0.35 deleterious(0) probably_damaging(0.999) TCGA-22-5473-01 13 67799867 67799867 C T PCDH9 Silent p.G902G 0.27 TCGA-22-5473-01 13 73428246 73428246 G C PIBF1 Silent p.V425V 0.20 TCGA-22-5473-01 13 74289590 74289590 C G KLF12 Silent p.R314R 0.64 TCGA-22-5473-01 13 76415914 76415914 G T LMO7 Nonsense_Mutation p.E1043* 0.34 TCGA-22-5473-01 13 78137971 78137971 T C SCEL Missense_Mutation p.V76A 0.62 tolerated(0.34) benign(0.001) TCGA-22-5473-01 13 84454902 84454902 C A SLITRK1 Silent p.L247L 0.18 TCGA-22-5473-01 13 88330197 88330197 G T SLITRK5 Missense_Mutation p.D852Y 0.53 deleterious(0) possibly_damaging(0.643) TCGA-22-5473-01 14 100615443 100615443 G A DEGS2 Silent p.F229F 0.23 TCGA-22-5473-01 14 106091400 106091400 T C IGHG4 Missense_Mutation p.H165R 0.24 tolerated(0.4) benign(0.003) TCGA-22-5473-01 14 106235584 106235584 G A IGHG3 Missense_Mutation p.P375L 0.09 tolerated(0.05) benign(0.051) TCGA-22-5473-01 14 106622046 106622046 C G IGHV3-16 Missense_Mutation p.V67L 0.38 tolerated_low_confidence(0.15) benign(0.164) TCGA-22-5473-01 14 106962949 106962949 G A IGHV1-45 Silent p.A111A 0.29 TCGA-22-5473-01 14 106963124 106963124 A G IGHV1-45 Missense_Mutation p.L53P 0.16 deleterious(0) possibly_damaging(0.679) TCGA-22-5473-01 14 106967343 106967343 G C IGHV1-46 Silent p.S19S 0.18 TCGA-22-5473-01 14 20389723 20389723 A T OR4K5 Missense_Mutation p.T320S 0.14 tolerated_low_confidence(0.82) benign(0) TCGA-22-5473-01 14 21502089 21502089 G C RNASE13 Missense_Mutation p.P120R 0.29 deleterious(0) probably_damaging(0.997) TCGA-22-5473-01 14 21831420 21831420 C A SUPT16H Missense_Mutation p.R456L 0.28 deleterious(0) probably_damaging(0.992) TCGA-22-5473-01 14 22363160 22363160 A G TRAV8-4 Silent p.K97K 0.20 TCGA-22-5473-01 14 24838738 24838738 G A NFATC4 Missense_Mutation p.R108H 0.26 tolerated(0.6) benign(0.003) TCGA-22-5473-01 14 33292897 33292897 C T AKAP6 Missense_Mutation p.L1960F 0.06 tolerated(0.2) benign(0.265) TCGA-22-5473-01 14 42360792 42360792 G T LRFN5 Silent p.G575G 0.31 TCGA-22-5473-01 14 55168860 55168860 G A SAMD4A Missense_Mutation p.G93R 0.32 tolerated(0.14) probably_damaging(1) TCGA-22-5473-01 14 58056099 58056099 G A SLC35F4 Missense_Mutation p.S177F 0.10 deleterious(0) probably_damaging(0.999) TCGA-22-5473-01 14 64467388 64467388 G T SYNE2 Missense_Mutation p.D1197Y 0.29 possibly_damaging(0.9) TCGA-22-5473-01 14 64519522 64519522 G A SYNE2 Missense_Mutation p.R2964H 0.25 benign(0) TCGA-22-5473-01 14 68215067 68215067 C A ZFYVE26 3'UTR 0.30 TCGA-22-5473-01 14 70713051 70713051 C A ADAM21P1 RNA 0.26 TCGA-22-5473-01 14 72961887 72961887 G - RGS6 Frame_Shift_Del p.E295Nfs*5 0.23 TCGA-22-5473-01 14 73614706 73614706 G C PSEN1 5'UTR 0.21 TCGA-22-5473-01 14 73987628 73987628 G T HEATR4 Missense_Mutation p.R333S 0.35 tolerated(0.14) possibly_damaging(0.762) TCGA-22-5473-01 14 76429597 76429597 G C TGFB3 Intron 0.22 TCGA-22-5473-01 14 86087829 86087829 C A FLRT2 5'UTR 0.34 TCGA-22-5473-01 14 89039028 89039028 G A ZC3H14 Missense_Mutation p.D180N 0.34 deleterious(0) probably_damaging(0.959) TCGA-22-5473-01 14 93118174 93118174 C T RIN3 Silent p.R260R 0.09 TCGA-22-5473-01 14 93142918 93142918 G A RIN3 Missense_Mutation p.E812K 0.18 deleterious(0) probably_damaging(0.997) TCGA-22-5473-01 14 94245620 94245620 A G PRIMA1 Missense_Mutation p.V44A 0.32 tolerated(0.07) benign(0.108) TCGA-22-5473-01 14 96178694 96178694 C G TCL1A Missense_Mutation p.E54Q 0.26 tolerated(0.29) benign(0.14) TCGA-22-5473-01 15 20170107 20170107 C A IGHV1OR15-9 Missense_Mutation p.W55C 0.21 deleterious(0) probably_damaging(1) TCGA-22-5473-01 15 23811259 23811259 G A MKRN3 Silent p.K110K 0.22 TCGA-22-5473-01 15 23890784 23890784 T A MAGEL2 Silent p.A99A 0.32 TCGA-22-5473-01 15 25417840 25417840 C A SNORD115-2 RNA 0.27 TCGA-22-5473-01 15 25446530 25446530 C G SNORD115-17 RNA 0.30 TCGA-22-5473-01 15 25467536 25467536 T C SNORD115-28 RNA 0.22 TCGA-22-5473-01 15 25932875 25932875 A G ATP10A Missense_Mutation p.V1089A 0.25 deleterious(0) benign(0.062) TCGA-22-5473-01 15 25958918 25958918 C T ATP10A Missense_Mutation p.M749I 0.25 deleterious(0) probably_damaging(0.99) TCGA-22-5473-01 15 28235790 28235790 C A OCA2 Missense_Mutation p.V350L 0.41 deleterious(0) possibly_damaging(0.866) TCGA-22-5473-01 15 28902470 28902470 A T HERC2P9 Intron 0.20 TCGA-22-5473-01 15 29393881 29393881 G C APBA2 Missense_Mutation p.R473P 0.24 deleterious(0) possibly_damaging(0.894) TCGA-22-5473-01 15 31352744 31352744 C T TRPM1 Intron 0.34 TCGA-22-5473-01 15 32926224 32926224 G T ARHGAP11A Silent p.G442G 0.27 TCGA-22-5473-01 15 35834710 35834710 T A DPH6 Splice_Site p.X8_splice 0.25 TCGA-22-5473-01 15 40628788 40628788 C A C15orf52 Missense_Mutation p.G336C 0.26 deleterious(0) probably_damaging(1) TCGA-22-5473-01 15 42695083 42695083 T G CAPN3 Missense_Mutation p.V543G 0.30 deleterious(0.01) probably_damaging(0.97) TCGA-22-5473-01 15 43819299 43819299 C G MAP1A Missense_Mutation p.F1876L 0.40 probably_damaging(0.991) TCGA-22-5473-01 15 48719794 48719794 G A FBN1 Missense_Mutation p.H2392Y 0.34 benign(0.004) TCGA-22-5473-01 15 48788313 48788313 A G FBN1 Silent p.D801D 0.25 TCGA-22-5473-01 15 49048734 49048734 G A CEP152 Missense_Mutation p.S904F 0.37 deleterious(0) possibly_damaging(0.824) TCGA-22-5473-01 15 51696579 51696579 T C GLDN Silent p.A428A 0.39 TCGA-22-5473-01 15 51792045 51792045 C T DMXL2 Missense_Mutation p.D1126N 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-22-5473-01 15 53908224 53908224 G T WDR72 Missense_Mutation p.L727M 0.26 tolerated(0.05) benign(0.213) TCGA-22-5473-01 15 59323142 59323142 G C RNF111 Missense_Mutation p.E41Q 0.30 tolerated_low_confidence(0.06) benign(0.012) TCGA-22-5473-01 15 65153733 65153733 G A AC069368.3 Missense_Mutation p.G148S 0.33 tolerated(0.36) benign(0.129) TCGA-22-5473-01 15 66044854 66044854 T G DENND4A Missense_Mutation p.I142L 0.22 tolerated(0.24) benign(0.014) TCGA-22-5473-01 15 68119422 68119422 C T SKOR1 Missense_Mutation p.P526L 0.15 deleterious_low_confidence(0.01) benign(0.188) TCGA-22-5473-01 15 74738472 74738472 G A UBL7 Nonsense_Mutation p.Q368* 0.38 TCGA-22-5473-01 15 75586127 75586127 C A GOLGA6D Silent p.R551R 0.34 TCGA-22-5473-01 15 75650580 75650580 T A MAN2C1 Missense_Mutation p.T854S 0.18 deleterious(0.01) probably_damaging(0.933) TCGA-22-5473-01 15 78393758 78393758 C T SH2D7 Missense_Mutation p.P388L 0.26 tolerated(0.06) benign(0.009) TCGA-22-5473-01 15 78757687 78757687 G C IREB2 Missense_Mutation p.D123H 0.16 deleterious(0.01) probably_damaging(1) TCGA-22-5473-01 15 79341890 79341890 G A RASGRF1 Missense_Mutation p.T191I 0.33 tolerated(0.43) benign(0.001) TCGA-22-5473-01 15 80260024 80260024 T A BCL2A1 Intron 0.39 TCGA-22-5473-01 15 89753509 89753509 G C RLBP1 3'UTR 0.35 TCGA-22-5473-01 15 91037999 91037999 G T IQGAP1 Silent p.L1561L 0.34 TCGA-22-5473-01 16 10032171 10032171 G T GRIN2A Missense_Mutation p.Q218K 0.15 tolerated(0.22) possibly_damaging(0.476) TCGA-22-5473-01 16 17211612 17211612 C G XYLT1 Silent p.L816L 0.21 TCGA-22-5473-01 16 20482472 20482472 G T ACSM2A Missense_Mutation p.S225I 0.36 deleterious(0) possibly_damaging(0.871) TCGA-22-5473-01 16 20749105 20749105 C T THUMPD1 Missense_Mutation p.G194R 0.21 deleterious(0) probably_damaging(0.924) TCGA-22-5473-01 16 20976398 20976398 G C DNAH3 Silent p.L2936L 0.23 TCGA-22-5473-01 16 22269837 22269837 G A EEF2K Missense_Mutation p.R351K 0.37 tolerated(0.07) probably_damaging(0.917) TCGA-22-5473-01 16 2326794 2326794 G A ABCA3 Silent p.L1666L 0.17 TCGA-22-5473-01 16 2349432 2349432 C T ABCA3 Silent p.G571G 0.17 TCGA-22-5473-01 16 25123230 25123230 C G LCMT1 Missense_Mutation p.S9C 0.13 deleterious_low_confidence(0.01) benign(0.423) TCGA-22-5473-01 16 27786317 27786317 A C KIAA0556 Missense_Mutation p.D1454A 0.24 deleterious(0) probably_damaging(1) TCGA-22-5473-01 16 2815055 2815055 G A SRRM2 Missense_Mutation p.C1509Y 0.20 unknown(0) TCGA-22-5473-01 16 28603088 28603088 G C CCDC101 3'UTR 0.26 TCGA-22-5473-01 16 28913589 28913589 C G ATP2A1 Silent p.L802L 0.26 TCGA-22-5473-01 16 28914425 28914425 C T ATP2A1 Missense_Mutation p.S940F 0.26 deleterious(0) probably_damaging(1) TCGA-22-5473-01 16 3140292 3140292 G A ZSCAN10 Silent p.C326C 0.20 TCGA-22-5473-01 16 31500570 31500570 T G SLC5A2 Missense_Mutation p.Y526D 0.05 deleterious(0) probably_damaging(0.999) TCGA-22-5473-01 16 32077428 32077428 G - IGHV3OR16-9 Frame_Shift_Del p.S17Pfs*2 0.13 TCGA-22-5473-01 16 3641118 3641118 C G SLX4 Missense_Mutation p.E841Q 0.05 deleterious(0) probably_damaging(0.997) TCGA-22-5473-01 16 47675523 47675523 C G PHKB Missense_Mutation p.L510V 0.34 deleterious(0) probably_damaging(0.99) TCGA-22-5473-01 16 4810574 4810574 C A ZNF500 Nonsense_Mutation p.E227* 0.16 TCGA-22-5473-01 16 4810575 4810575 C A ZNF500 Missense_Mutation p.L226F 0.17 tolerated(0.15) benign(0.031) TCGA-22-5473-01 16 4852667 4852667 C A ROGDI 5'UTR 0.20 TCGA-22-5473-01 16 50783821 50783821 G T CYLD Missense_Mutation p.G71V 0.58 tolerated_low_confidence(0.2) benign(0.08) TCGA-22-5473-01 16 52497888 52497888 G - TOX3 Frame_Shift_Del p.V123Wfs*30 0.30 TCGA-22-5473-01 16 53358337 53358337 A T CHD9 Nonsense_Mutation p.K2726* 0.37 TCGA-22-5473-01 16 67233628 67233628 C A ELMO3 Missense_Mutation p.A107E 0.65 deleterious(0.01) probably_damaging(0.962) TCGA-22-5473-01 16 67316211 67316211 G A PLEKHG4 Silent p.L404L 0.36 TCGA-22-5473-01 16 69152223 69152223 G A CHTF8 3'UTR 0.25 TCGA-22-5473-01 16 69154502 69154502 G A CHTF8 Silent p.I64I 0.23 TCGA-22-5473-01 16 72821903 72821903 C T ZFHX3 Silent p.Q3424Q 0.21 TCGA-22-5473-01 16 74339345 74339345 T A PSMD7 Missense_Mutation p.L230Q 0.69 deleterious(0) probably_damaging(0.988) TCGA-22-5473-01 16 74949878 74949878 G A WDR59 Missense_Mutation p.P372S 0.22 tolerated(0.85) benign(0) TCGA-22-5473-01 16 79632723 79632723 G C MAF Missense_Mutation p.N359K 0.41 tolerated(0.19) probably_damaging(0.957) TCGA-22-5473-01 16 84212912 84212912 G A TAF1C Missense_Mutation p.R749W 0.48 deleterious(0) probably_damaging(0.919) TCGA-22-5473-01 16 9934639 9934639 C A GRIN2A Missense_Mutation p.V506F 0.55 tolerated(0.68) probably_damaging(0.994) TCGA-22-5473-01 17 10355635 10355635 C A MYH4 Nonsense_Mutation p.E1121* 0.64 TCGA-22-5473-01 17 10411242 10411242 C A MYH1 Missense_Mutation p.K643N 0.60 deleterious(0) possibly_damaging(0.903) TCGA-22-5473-01 17 17046940 17046940 G C MPRIP Missense_Mutation p.R369T 0.20 deleterious(0) probably_damaging(0.979) TCGA-22-5473-01 17 18647983 18647983 G C FBXW10 Missense_Mutation p.Q142H 0.38 deleterious(0) probably_damaging(0.999) TCGA-22-5473-01 17 2279103 2279103 G A SGSM2 Silent p.E806E 0.64 TCGA-22-5473-01 17 26708607 26708607 G A SARM1 Missense_Mutation p.E252K 0.50 tolerated(0.53) possibly_damaging(0.504) TCGA-22-5473-01 17 27778620 27778620 C G TAOK1 Silent p.L18L 0.27 TCGA-22-5473-01 17 29645355 29645355 C T EVI2A Missense_Mutation p.G249E 0.10 tolerated(0.08) possibly_damaging(0.868) TCGA-22-5473-01 17 32956200 32956200 C T TMEM132E Nonsense_Mutation p.Q349* 0.15 TCGA-22-5473-01 17 36918668 36918668 C T PSMB3 Missense_Mutation p.P160L 0.32 deleterious(0.02) benign(0.095) TCGA-22-5473-01 17 38499115 38499116 - CA RARA Intron 0.35 TCGA-22-5473-01 17 38974732 38974732 T C KRT10 Missense_Mutation p.Y584C 0.57 deleterious_low_confidence(0) unknown(0) TCGA-22-5473-01 17 39020084 39020084 G C KRT12 Silent p.G280G 0.57 TCGA-22-5473-01 17 39661684 39661684 C A KRT13 Missense_Mutation p.G40V 0.42 tolerated(0.22) unknown(0) TCGA-22-5473-01 17 40371734 40371734 C A STAT5B Missense_Mutation p.R226L 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-22-5473-01 17 40725086 40725086 G C MLX 3'UTR 0.17 TCGA-22-5473-01 17 41895442 41895442 C T MPP3 Silent p.P306P 0.21 TCGA-22-5473-01 17 44060961 44060961 C - MAPT Frame_Shift_Del p.I265Sfs*25 0.30 TCGA-22-5473-01 17 45730120 45730120 A G KPNB1 Missense_Mutation p.R54G 0.20 deleterious(0) probably_damaging(1) TCGA-22-5473-01 17 46691796 46691796 G T HOXB8 Missense_Mutation p.L91M 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-22-5473-01 17 48172882 48172882 C A PDK2 Missense_Mutation p.P28Q 0.32 deleterious(0.04) probably_damaging(0.983) TCGA-22-5473-01 17 48594754 48594754 G T MYCBPAP Missense_Mutation p.C145F 0.23 tolerated(0.7) possibly_damaging(0.509) TCGA-22-5473-01 17 53345449 53345449 T A HLF Splice_Site p.X151_splice 0.18 TCGA-22-5473-01 17 5418228 5418228 G T NLRP1 Missense_Mutation p.P1423H 0.58 tolerated(0.05) probably_damaging(0.992) TCGA-22-5473-01 17 56565108 56565108 C G HSF5 Silent p.A176A 0.29 TCGA-22-5473-01 17 56581118 56581118 G T MTMR4 Missense_Mutation p.R600S 0.21 tolerated(0.26) possibly_damaging(0.519) TCGA-22-5473-01 17 57937646 57937646 G C TUBD1 3'UTR 0.15 TCGA-22-5473-01 17 57937725 57937725 G A TUBD1 Silent p.F440F 0.10 TCGA-22-5473-01 17 60464772 60464772 T A EFCAB3 Missense_Mutation p.M101K 0.39 tolerated(0.06) benign(0.297) TCGA-22-5473-01 17 60813357 60813357 G A MARCH10 Silent p.F624F 0.18 TCGA-22-5473-01 17 61600728 61600728 G A KCNH6 5'Flank 0.62 TCGA-22-5473-01 17 63193283 63193283 C A RGS9 Silent p.A300A 0.33 TCGA-22-5473-01 17 65918992 65918992 G T BPTF Missense_Mutation p.S1865I 0.35 probably_damaging(0.999) TCGA-22-5473-01 17 67181617 67181617 C T ABCA10 Splice_Site p.X833_splice 0.33 TCGA-22-5473-01 17 67300870 67300870 T A ABCA5 Missense_Mutation p.L290F 0.40 tolerated(0.36) probably_damaging(0.997) TCGA-22-5473-01 17 7124370 7124370 A T ACADVL Missense_Mutation p.N180I 0.58 deleterious(0) probably_damaging(0.999) TCGA-22-5473-01 17 729316 729316 G C NXN Silent p.L121L 0.25 TCGA-22-5473-01 17 73492462 73492462 C T KIAA0195 Silent p.P1051P 0.40 TCGA-22-5473-01 17 7577046 7577046 C A TP53 Nonsense_Mutation p.E298* 0.50 TCGA-22-5473-01 17 78268622 78268622 G A RNF213 Silent p.G525G 0.22 TCGA-22-5473-01 17 78269537 78269537 C T RNF213 Missense_Mutation p.H646Y 0.24 benign(0) TCGA-22-5473-01 17 78272202 78272202 G T RNF213 Silent p.L698L 0.27 TCGA-22-5473-01 17 79220444 79220444 C - SLC38A10 Frame_Shift_Del p.V758Cfs*76 0.35 TCGA-22-5473-01 17 79503906 79503906 G T FSCN2 Missense_Mutation p.D451Y 0.48 deleterious(0.03) possibly_damaging(0.725) TCGA-22-5473-01 17 8166571 8166571 G C PFAS Missense_Mutation p.A519P 0.48 deleterious(0) probably_damaging(1) TCGA-22-5473-01 17 8753098 8753098 C T PIK3R6 Splice_Site p.X5_splice 0.57 TCGA-22-5473-01 18 12325637 12325637 C A TUBB6 Silent p.A283A 0.21 TCGA-22-5473-01 18 14478986 14478986 T C CXADRP3 RNA 0.22 TCGA-22-5473-01 18 14850265 14850265 G A ANKRD30B Missense_Mutation p.E1031K 0.35 tolerated(0.09) benign(0.133) TCGA-22-5473-01 18 20564878 20564878 C T RBBP8 Missense_Mutation p.H212Y 0.15 tolerated(0.24) benign(0.013) TCGA-22-5473-01 18 34854387 34854387 C G CELF4 Missense_Mutation p.A230P 0.26 deleterious(0) probably_damaging(0.978) TCGA-22-5473-01 18 40853715 40853715 C A SYT4 Missense_Mutation p.G227W 0.32 deleterious(0) probably_damaging(1) TCGA-22-5473-01 18 5398105 5398105 G T EPB41L3 Missense_Mutation p.S796Y 0.16 deleterious(0.05) probably_damaging(0.927) TCGA-22-5473-01 18 5438111 5438111 T A EPB41L3 Splice_Site p.X177_splice 0.49 TCGA-22-5473-01 18 674280 674280 G C ENOSF1 3'UTR 0.18 TCGA-22-5473-01 18 7231415 7231415 G C LRRC30 Silent p.L93L 0.13 TCGA-22-5473-01 18 72999460 72999460 G T TSHZ1 Missense_Mutation p.G655W 0.29 deleterious(0) possibly_damaging(0.447) TCGA-22-5473-01 18 76756976 76756976 G T SALL3 Missense_Mutation p.G1186V 0.59 deleterious(0) probably_damaging(0.994) TCGA-22-5473-01 18 8609899 8609899 G C RAB12 Silent p.L58L 0.27 TCGA-22-5473-01 18 9255357 9255357 G C ANKRD12 Missense_Mutation p.E698Q 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-22-5473-01 19 10578192 10578192 C T PDE4A Silent p.H852H 0.25 TCGA-22-5473-01 19 10908188 10908188 C T DNM2 Silent p.A443A 0.17 TCGA-22-5473-01 19 11417458 11417458 T C TSPAN16 Intron 0.48 TCGA-22-5473-01 19 11447869 11447869 C T RAB3D Silent p.K69K 0.04 TCGA-22-5473-01 19 11833647 11833647 G C ZNF823 Silent p.S234S 0.19 TCGA-22-5473-01 19 11943034 11943034 A G ZNF440 Missense_Mutation p.D348G 0.26 tolerated(0.19) benign(0) TCGA-22-5473-01 19 12540888 12540888 C A ZNF443 3'UTR 0.39 TCGA-22-5473-01 19 14029608 14029608 C A CC2D1A Silent p.P332P 0.24 TCGA-22-5473-01 19 1468499 1468499 C G APC2 Silent p.P1733P 0.23 TCGA-22-5473-01 19 15535160 15535160 C A WIZ Missense_Mutation p.D687Y 0.28 deleterious(0) possibly_damaging(0.908) TCGA-22-5473-01 19 17001363 17001363 C G F2RL3 Silent p.T363T 0.21 TCGA-22-5473-01 19 17012067 17012067 C A CPAMD8 Missense_Mutation p.V1623L 0.19 tolerated(0.12) benign(0.17) TCGA-22-5473-01 19 17678315 17678315 C T COLGALT1 Missense_Mutation p.A197V 0.22 tolerated(0.48) benign(0.115) TCGA-22-5473-01 19 18897348 18897348 C T COMP Silent p.P416P 0.14 TCGA-22-5473-01 19 19230903 19230903 C T TMEM161A Missense_Mutation p.E426K 0.28 tolerated(0.41) possibly_damaging(0.61) TCGA-22-5473-01 19 20044144 20044144 C A ZNF93 Missense_Mutation p.T127K 0.29 tolerated(1) benign(0.001) TCGA-22-5473-01 19 21365741 21365741 C T ZNF431 Missense_Mutation p.S212L 0.18 tolerated(0.07) probably_damaging(0.997) TCGA-22-5473-01 19 21720081 21720081 C T ZNF429 Missense_Mutation p.S409F 0.25 tolerated(0.62) benign(0.253) TCGA-22-5473-01 19 22255656 22255656 G T ZNF257 Nonsense_Mutation p.E17* 0.37 TCGA-22-5473-01 19 22271356 22271356 G T ZNF257 Silent p.R268R 0.14 TCGA-22-5473-01 19 22272245 22272245 T A ZNF257 3'UTR 0.16 TCGA-22-5473-01 19 22272246 22272246 G C ZNF257 3'UTR 0.16 TCGA-22-5473-01 19 22363597 22363597 G T ZNF676 Missense_Mutation p.P308T 0.15 deleterious(0) benign(0.27) TCGA-22-5473-01 19 22779120 22779120 G C CTC-457E21.3 RNA 0.33 TCGA-22-5473-01 19 29698958 29698958 C T UQCRFS1 Missense_Mutation p.E108K 0.07 tolerated(0.12) possibly_damaging(0.496) TCGA-22-5473-01 19 32968458 32968458 G C DPY19L3 Silent p.A576A 0.74 TCGA-22-5473-01 19 33119701 33119701 G A ANKRD27 Missense_Mutation p.H422Y 0.15 tolerated(0.09) benign(0.415) TCGA-22-5473-01 19 33183180 33183180 C A NUDT19 Missense_Mutation p.P105H 0.69 tolerated(0.55) possibly_damaging(0.814) TCGA-22-5473-01 19 35250052 35250052 G A ZNF599 Nonsense_Mutation p.Q552* 0.35 TCGA-22-5473-01 19 35758764 35758764 C A LSR 3'UTR 0.17 TCGA-22-5473-01 19 35849879 35849879 C A FFAR3 Silent p.L29L 0.16 TCGA-22-5473-01 19 36243290 36243290 C T LIN37 Intron 0.12 TCGA-22-5473-01 19 36273344 36273344 G T ARHGAP33 Silent p.V385V 0.76 TCGA-22-5473-01 19 36279116 36279116 C T ARHGAP33 Missense_Mutation p.R1056C 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.59) TCGA-22-5473-01 19 37368786 37368786 A C ZNF345 Missense_Mutation p.S352R 0.17 tolerated(0.25) benign(0.046) TCGA-22-5473-01 19 38912755 38912755 C T RASGRP4 Missense_Mutation p.R21Q 0.48 tolerated(0.11) benign(0.033) TCGA-22-5473-01 19 39412889 39412889 C A SARS2 Nonsense_Mutation p.E128* 0.17 TCGA-22-5473-01 19 41626291 41626291 G C CYP2F1 Missense_Mutation p.R125T 0.24 deleterious(0) probably_damaging(0.971) TCGA-22-5473-01 19 43859724 43859724 G C CD177 Nonstop_Mutation p.*146Sext*29 0.21 TCGA-22-5473-01 19 44571244 44571244 C G ZNF223 Silent p.L421L 0.19 TCGA-22-5473-01 19 47492887 47492887 C T ARHGAP35 Missense_Mutation p.P1331S 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-22-5473-01 19 47879256 47879256 G A DHX34 Missense_Mutation p.E795K 0.38 tolerated(0.91) benign(0.108) TCGA-22-5473-01 19 48387013 48387013 G A SULT2A1 Silent p.L56L 0.52 TCGA-22-5473-01 19 49496410 49496410 G A GYS1 5'UTR 0.45 TCGA-22-5473-01 19 50885782 50885782 G T NR1H2 Nonsense_Mutation p.E436* 0.82 TCGA-22-5473-01 19 51015807 51015807 C T ASPDH Missense_Mutation p.D155N 0.25 tolerated(0.25) benign(0.027) TCGA-22-5473-01 19 53611991 53611991 C A ZNF415 Missense_Mutation p.G436V 0.22 deleterious(0.01) probably_damaging(0.996) TCGA-22-5473-01 19 55752352 55752352 G A PPP6R1 Silent p.S419S 0.31 TCGA-22-5473-01 19 56243511 56243511 C T NLRP9 Missense_Mutation p.M562I 0.25 tolerated(0.1) benign(0.008) TCGA-22-5473-01 19 57059206 57059206 C T ZFP28 Missense_Mutation p.S153F 0.40 deleterious(0) possibly_damaging(0.59) TCGA-22-5473-01 19 58420562 58420562 G A ZNF417 Missense_Mutation p.R362C 0.16 tolerated(0.07) possibly_damaging(0.627) TCGA-22-5473-01 19 6306644 6306644 G C ACER1 3'UTR 0.23 TCGA-22-5473-01 19 6984771 6984771 C G EMR4P RNA 0.17 TCGA-22-5473-01 19 9056897 9056897 T A MUC16 Silent p.P10183P 0.49 TCGA-22-5473-01 1 10425165 10425165 G A KIF1B Silent p.Q1412Q 0.30 TCGA-22-5473-01 1 11008317 11008317 T C C1orf127 Silent p.P625P 0.29 TCGA-22-5473-01 1 111495334 111495334 G C LRIF1 Missense_Mutation p.L58V 0.25 tolerated(0.57) possibly_damaging(0.801) TCGA-22-5473-01 1 11298641 11298641 G A MTOR Missense_Mutation p.A607V 0.32 tolerated(0.13) probably_damaging(0.994) TCGA-22-5473-01 1 114970454 114970454 G A TRIM33 Silent p.S406S 0.29 TCGA-22-5473-01 1 118506562 118506562 G A SPAG17 Splice_Site p.X2178_splice 0.24 TCGA-22-5473-01 1 12317132 12317132 C T VPS13D Missense_Mutation p.A310V 0.22 benign(0.228) TCGA-22-5473-01 1 1250995 1250995 C G CPSF3L Missense_Mutation p.D151H 0.31 deleterious(0.01) probably_damaging(0.986) TCGA-22-5473-01 1 1267268 1267268 G C TAS1R3 Missense_Mutation p.E148Q 0.30 deleterious(0.01) probably_damaging(0.993) TCGA-22-5473-01 1 1267812 1267812 G A TAS1R3 Missense_Mutation p.E301K 0.44 deleterious(0.01) probably_damaging(0.976) TCGA-22-5473-01 1 145109637 145109637 G A SEC22B RNA 0.04 TCGA-22-5473-01 1 145748527 145748527 C A PDZK1 Silent p.R134R 0.26 TCGA-22-5473-01 1 148004660 148004660 G A NBPF14 Missense_Mutation p.S891L 0.35 deleterious(0.01) benign(0.143) TCGA-22-5473-01 1 149369373 149369373 G C RP5-998N21.4 3'Flank 0.59 TCGA-22-5473-01 1 151108492 151108492 A T SEMA6C Silent p.T418T 0.65 TCGA-22-5473-01 1 151204164 151204164 G C PIP5K1A Missense_Mutation p.L85F 0.20 deleterious(0) probably_damaging(0.992) TCGA-22-5473-01 1 152193338 152193338 C T HRNR Missense_Mutation p.G256D 0.23 unknown(0) TCGA-22-5473-01 1 154091182 154091182 G A NUP210L Missense_Mutation p.H477Y 0.17 tolerated(0.07) benign(0.008) TCGA-22-5473-01 1 155207244 155207244 C T GBA Missense_Mutation p.R296Q 0.25 deleterious(0) probably_damaging(0.995) TCGA-22-5473-01 1 156902656 156902656 C T LRRC71 Silent p.F525F 0.25 TCGA-22-5473-01 1 157804447 157804447 C A CD5L Missense_Mutation p.Q156H 0.18 tolerated(0.05) benign(0.086) TCGA-22-5473-01 1 158262125 158262125 G T CD1C Missense_Mutation p.D194Y 0.68 deleterious(0) possibly_damaging(0.848) TCGA-22-5473-01 1 158605732 158605732 C A SPTA1 Missense_Mutation p.W1801C 0.65 deleterious(0) probably_damaging(1) TCGA-22-5473-01 1 158655035 158655035 C T SPTA1 Missense_Mutation p.A43T 0.20 tolerated(0.45) benign(0.044) TCGA-22-5473-01 1 160851012 160851012 G T ITLN1 Missense_Mutation p.L166M 0.70 deleterious(0.01) probably_damaging(1) TCGA-22-5473-01 1 169390622 169390622 C T CCDC181 Silent p.K349K 0.16 TCGA-22-5473-01 1 170931074 170931074 C T MROH9 Missense_Mutation p.T111M 0.45 tolerated(0.09) benign(0.003) TCGA-22-5473-01 1 175331872 175331872 G T TNR Silent p.T927T 0.25 TCGA-22-5473-01 1 176564279 176564279 C A PAPPA2 Nonsense_Mutation p.Y513* 0.23 TCGA-22-5473-01 1 178490304 178490304 C T TEX35 Intron 0.27 TCGA-22-5473-01 1 180053187 180053187 G T CEP350 Missense_Mutation p.R2053S 0.24 probably_damaging(0.999) TCGA-22-5473-01 1 18152640 18152640 G A ACTL8 Missense_Mutation p.G243S 0.28 deleterious(0) probably_damaging(1) TCGA-22-5473-01 1 182615810 182615810 A G RGS8 3'UTR 0.21 TCGA-22-5473-01 1 183200120 183200120 C G LAMC2 Nonsense_Mutation p.S580* 0.63 TCGA-22-5473-01 1 186031077 186031077 C T HMCN1 Silent p.I2469I 0.19 TCGA-22-5473-01 1 186106956 186106956 G C HMCN1 Missense_Mutation p.W4592C 0.13 probably_damaging(0.997) TCGA-22-5473-01 1 186313082 186313083 GA - TPR Frame_Shift_Del p.L1186Qfs*2 0.28 TCGA-22-5473-01 1 190067721 190067721 G A BRINP3 Silent p.F576F 0.73 TCGA-22-5473-01 1 192547471 192547471 G C RGS1 Missense_Mutation p.E134Q 0.21 tolerated(0.21) possibly_damaging(0.502) TCGA-22-5473-01 1 192547555 192547555 G C RGS1 Intron 0.19 TCGA-22-5473-01 1 193074708 193074708 C A GLRX2 Missense_Mutation p.V21L 0.20 tolerated_low_confidence(0.61) benign(0.001) TCGA-22-5473-01 1 196227412 196227412 C T KCNT2 Silent p.L1041L 0.72 TCGA-22-5473-01 1 197060090 197060090 C G ASPM Missense_Mutation p.E3176Q 0.28 tolerated(0.19) benign(0.186) TCGA-22-5473-01 1 201751848 201751848 G T NAV1 Silent p.R736R 0.36 TCGA-22-5473-01 1 207297617 207297617 C T C4BPA Silent p.D204D 0.21 TCGA-22-5473-01 1 210001471 210001471 G A DIEXF Silent p.K21K 0.20 TCGA-22-5473-01 1 216246460 216246460 C T USH2A Missense_Mutation p.G1919S 0.66 benign(0) TCGA-22-5473-01 1 216850616 216850616 C T ESRRG Missense_Mutation p.G97R 0.30 deleterious(0.01) benign(0.099) TCGA-22-5473-01 1 216850617 216850617 C A ESRRG Silent p.L96L 0.32 TCGA-22-5473-01 1 218520187 218520187 G A TGFB2 Silent p.L48L 0.30 TCGA-22-5473-01 1 227400839 227400839 C T CDC42BPA Missense_Mutation p.E118K 0.06 deleterious(0) benign(0.196) TCGA-22-5473-01 1 228345504 228345504 G C GJC2 Missense_Mutation p.E15D 0.31 deleterious(0) probably_damaging(0.947) TCGA-22-5473-01 1 22924692 22924692 A G EPHA8 Missense_Mutation p.D722G 0.27 deleterious(0) probably_damaging(1) TCGA-22-5473-01 1 229422230 229422230 C G RAB4A Intron 0.22 TCGA-22-5473-01 1 23240345 23240345 C T EPHB2 3'UTR 0.20 TCGA-22-5473-01 1 236746418 236746418 C G HEATR1 Missense_Mutation p.E774Q 0.15 tolerated(0.89) benign(0.001) TCGA-22-5473-01 1 237693748 237693748 T C RYR2 Silent p.C948C 0.14 TCGA-22-5473-01 1 237758839 237758839 G A RYR2 Missense_Mutation p.S1493N 0.65 benign(0.051) TCGA-22-5473-01 1 241964596 241964596 G T WDR64 3'UTR 0.18 TCGA-22-5473-01 1 242024771 242024771 A G EXO1 Silent p.E336E 0.65 TCGA-22-5473-01 1 242383356 242383356 G T PLD5 Missense_Mutation p.F223L 0.66 tolerated(0.07) probably_damaging(0.997) TCGA-22-5473-01 1 243480085 243480085 G C SDCCAG8 Missense_Mutation p.V320L 0.61 tolerated(0.14) benign(0.045) TCGA-22-5473-01 1 24484323 24484323 A T IFNLR1 Missense_Mutation p.V287E 0.27 deleterious(0.02) benign(0.001) TCGA-22-5473-01 1 245027496 245027496 G C HNRNPU Silent p.L38L 0.38 TCGA-22-5473-01 1 247013588 247013588 C G AHCTF1 Missense_Mutation p.R1916T 0.27 deleterious(0.01) possibly_damaging(0.798) TCGA-22-5473-01 1 248004562 248004562 G A OR11L1 Silent p.L213L 0.15 TCGA-22-5473-01 1 248201788 248201788 C A OR2L2 Silent p.I73I 0.23 TCGA-22-5473-01 1 248262725 248262725 G T OR2L13 Silent p.L16L 0.59 TCGA-22-5473-01 1 248458198 248458198 G A OR2T12 Missense_Mutation p.S228F 0.23 deleterious(0) benign(0.248) TCGA-22-5473-01 1 248487683 248487683 A T OR2M7 Missense_Mutation p.L63H 0.71 deleterious(0) probably_damaging(0.986) TCGA-22-5473-01 1 248685325 248685325 C T OR2G6 Silent p.V126V 0.28 TCGA-22-5473-01 1 249106516 249106516 C A SH3BP5L Silent p.T255T 0.54 TCGA-22-5473-01 1 25824875 25824875 C T TMEM57 Missense_Mutation p.P638L 0.26 tolerated(0.1) probably_damaging(0.979) TCGA-22-5473-01 1 26603162 26603162 G C CEP85 Missense_Mutation p.C680S 0.36 deleterious(0) probably_damaging(1) TCGA-22-5473-01 1 32800483 32800483 G T MARCKSL1 Missense_Mutation p.S101R 0.29 deleterious(0) probably_damaging(0.96) TCGA-22-5473-01 1 34003178 34003178 G T CSMD2 Silent p.S3077S 0.27 TCGA-22-5473-01 1 3410404 3410404 C G MEGF6 Missense_Mutation p.A1440P 0.16 deleterious(0.01) possibly_damaging(0.602) TCGA-22-5473-01 1 36474339 36474339 G T AGO3 Missense_Mutation p.R281L 0.35 deleterious(0) possibly_damaging(0.715) TCGA-22-5473-01 1 36558756 36558756 C T ADPRHL2 Silent p.C287C 0.20 TCGA-22-5473-01 1 38411480 38411480 G A INPP5B Missense_Mutation p.R34C 0.22 tolerated(0.1) probably_damaging(0.994) TCGA-22-5473-01 1 41007298 41007298 A G ZNF684 Missense_Mutation p.T52A 0.25 tolerated(0.08) benign(0.004) TCGA-22-5473-01 1 44424465 44424465 C T IPO13 Silent p.L644L 0.25 TCGA-22-5473-01 1 52926837 52926837 T C ZCCHC11 Missense_Mutation p.Y1097C 0.27 deleterious(0) probably_damaging(0.998) TCGA-22-5473-01 1 55224731 55224731 C T PARS2 Missense_Mutation p.R35K 0.31 tolerated_low_confidence(0.72) benign(0.008) TCGA-22-5473-01 1 68564209 68564209 T C WLS 3'UTR 0.24 TCGA-22-5473-01 1 70504217 70504217 C A LRRC7 Missense_Mutation p.P866T 0.22 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-22-5473-01 1 70504751 70504751 G C LRRC7 Missense_Mutation p.A1044P 0.25 tolerated(0.28) benign(0.008) TCGA-22-5473-01 1 74507041 74507041 C A LRRIQ3 Missense_Mutation p.R525L 0.19 tolerated(0.16) benign(0.037) TCGA-22-5473-01 1 74670223 74670223 T A FPGT Silent p.V164V 0.28 TCGA-22-5473-01 1 79385867 79385867 C A ELTD1 Splice_Site p.X487_splice 0.27 TCGA-22-5473-01 1 82434990 82434990 T A LPHN2 Missense_Mutation p.N867K 0.24 deleterious(0) probably_damaging(0.999) TCGA-22-5473-01 1 85412764 85412764 T A MCOLN2 Missense_Mutation p.S267C 0.21 deleterious(0.04) possibly_damaging(0.765) TCGA-22-5473-01 1 89299084 89299084 G A PKN2 Missense_Mutation p.E970K 0.31 deleterious(0) possibly_damaging(0.861) TCGA-22-5473-01 1 91816355 91816355 C G HFM1 Missense_Mutation p.V716L 0.26 tolerated(1) benign(0) TCGA-22-5473-01 1 92185495 92185495 A T TGFBR3 Nonsense_Mutation p.C456* 0.23 TCGA-22-5473-01 1 92728459 92728459 C G GLMN Missense_Mutation p.L478F 0.08 deleterious(0) probably_damaging(1) TCGA-22-5473-01 1 94568695 94568695 C T ABCA4 Missense_Mutation p.R149K 0.23 tolerated(0.28) benign(0.003) TCGA-22-5473-01 1 97771800 97771800 A C DPYD Missense_Mutation p.I704M 0.33 tolerated(0.06) benign(0.146) TCGA-22-5473-01 1 98039315 98039315 C G DPYD Splice_Site p.X447_splice 0.27 TCGA-22-5473-01 1 98058935 98058935 C G DPYD Missense_Mutation p.A323P 0.23 deleterious(0.03) benign(0.005) TCGA-22-5473-01 20 13839949 13839949 T A SEL1L2 Intron 0.45 TCGA-22-5473-01 20 14307545 14307545 C T FLRT3 Missense_Mutation p.R203H 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-22-5473-01 20 168638 168638 T C DEFB128 Silent p.E57E 0.20 TCGA-22-5473-01 20 17581499 17581499 C T DSTN Silent p.L40L 0.16 TCGA-22-5473-01 20 18022311 18022314 CTTG TTT OVOL2 Frame_Shift_Del p.G127Afs*8 0.36 TCGA-22-5473-01 20 1918206 1918206 A T SIRPA Missense_Mutation p.R503W 0.63 deleterious(0) probably_damaging(0.971) TCGA-22-5473-01 20 23345385 23345385 C G GZF1 Nonsense_Mutation p.S122* 0.15 TCGA-22-5473-01 20 31606524 31606524 G A BPIFB2 Missense_Mutation p.E251K 0.04 tolerated(1) benign(0.003) TCGA-22-5473-01 20 32251450 32251450 T G C20orf144 Missense_Mutation p.L80W 0.08 deleterious(0) probably_damaging(0.966) TCGA-22-5473-01 20 32267691 32267691 C T E2F1 Missense_Mutation p.D148N 0.16 deleterious(0) probably_damaging(0.966) TCGA-22-5473-01 20 33872350 33874421 20:33872350-33874421 - EIF6 large deletion 0.35 TCGA-22-5473-01 20 36869797 36869797 G C KIAA1755 Missense_Mutation p.P246A 0.07 deleterious(0) probably_damaging(0.975) TCGA-22-5473-01 20 37555035 37555035 C A FAM83D Silent p.R14R 0.62 TCGA-22-5473-01 20 42694504 42694504 C T TOX2 Silent p.A371A 0.64 TCGA-22-5473-01 20 43804653 43804653 C T PI3 Silent p.P77P 0.62 TCGA-22-5473-01 20 44402954 44402954 G A WFDC3 3'UTR 0.09 TCGA-22-5473-01 20 44664529 44664529 G A SLC12A5 Silent p.E154E 0.18 TCGA-22-5473-01 20 6031567 6031567 G A LRRN4 Missense_Mutation p.R240W 0.20 deleterious(0) probably_damaging(0.964) TCGA-22-5473-01 21 10934063 10934063 T A TPTE Missense_Mutation p.D305V 0.11 deleterious(0) probably_damaging(0.999) TCGA-22-5473-01 21 10970025 10970025 C G TPTE Missense_Mutation p.A35P 0.06 tolerated(0.21) benign(0.184) TCGA-22-5473-01 21 19725358 19725358 T C TMPRSS15 Missense_Mutation p.I345V 0.29 tolerated(0.25) benign(0.05) TCGA-22-5473-01 21 32582453 32582453 G C TIAM1 Missense_Mutation p.P766A 0.23 tolerated(0.06) benign(0.348) TCGA-22-5473-01 21 44845334 44845334 G C SIK1 Missense_Mutation p.Q76E 0.35 tolerated(0.09) probably_damaging(0.981) TCGA-22-5473-01 21 46326964 46326964 C T ITGB2 Missense_Mutation p.R65Q 0.28 tolerated(0.47) benign(0.209) TCGA-22-5473-01 21 47532249 47532249 G C COL6A2 Missense_Mutation p.V158L 0.19 tolerated(0.05) possibly_damaging(0.735) TCGA-22-5473-01 22 19747140 19747140 C T TBX1 5'UTR 0.21 TCGA-22-5473-01 22 24095215 24095215 C T VPREB3 Missense_Mutation p.E74K 0.23 tolerated(0.06) benign(0.248) TCGA-22-5473-01 22 29706515 29706515 G C GAS2L1 Silent p.S240S 0.16 TCGA-22-5473-01 22 29745309 29745309 C A AP1B1 Silent p.R445R 0.20 TCGA-22-5473-01 22 30189459 30189459 C G ASCC2 Missense_Mutation p.E603D 0.23 tolerated(0.3) benign(0.003) TCGA-22-5473-01 22 32756259 32756259 G T RFPL3 Missense_Mutation p.D132Y 0.17 deleterious(0) benign(0.225) TCGA-22-5473-01 22 37696994 37696994 G C CYTH4 Missense_Mutation p.D161H 0.23 deleterious(0.01) probably_damaging(0.995) TCGA-22-5473-01 22 38609673 38609673 A C MAFF Intron 0.56 TCGA-22-5473-01 22 38894559 38894559 C T DDX17 Silent p.L186L 0.09 TCGA-22-5473-01 22 45127638 45127638 G T PRR5 Missense_Mutation p.E140D 0.65 tolerated(0.21) probably_damaging(0.992) TCGA-22-5473-01 22 45779481 45779481 C T SMC1B Missense_Mutation p.D642N 0.38 deleterious(0) probably_damaging(0.988) TCGA-22-5473-01 22 50703320 50703320 T A MAPK11 3'UTR 0.69 TCGA-22-5473-01 22 50900000 50900000 G A SBF1 Missense_Mutation p.L931F 0.26 deleterious(0) probably_damaging(0.999) TCGA-22-5473-01 2 102456381 102456381 C T MAP4K4 Nonsense_Mutation p.Q292* 0.17 TCGA-22-5473-01 2 109100635 109100635 G T GCC2 Nonsense_Mutation p.E1161* 0.17 TCGA-22-5473-01 2 1161261 1161261 G A SNTG2 Missense_Mutation p.E147K 0.12 tolerated(0.23) benign(0.153) TCGA-22-5473-01 2 125530508 125530508 T A CNTNAP5 Missense_Mutation p.L888Q 0.21 deleterious(0) probably_damaging(0.991) TCGA-22-5473-01 2 131486964 131486964 G A GPR148 Silent p.L80L 0.38 TCGA-22-5473-01 2 131521481 131521481 G T AMER3 Missense_Mutation p.L612F 0.20 tolerated(0.71) benign(0.01) TCGA-22-5473-01 2 132021447 132021447 G T POTEE Nonsense_Mutation p.E807* 0.48 TCGA-22-5473-01 2 132290239 132290239 C T CCDC74A Missense_Mutation p.A254V 0.20 tolerated(1) benign(0.002) TCGA-22-5473-01 2 135744573 135744573 T C MAP3K19 Silent p.T623T 0.28 TCGA-22-5473-01 2 135744883 135744883 A G MAP3K19 Missense_Mutation p.I520T 0.24 tolerated(0.06) benign(0.066) TCGA-22-5473-01 2 135965199 135965199 C A ZRANB3 Silent p.L938L 0.22 TCGA-22-5473-01 2 136566025 136566025 C G LCT Missense_Mutation p.E1298Q 0.20 deleterious(0.01) probably_damaging(0.991) TCGA-22-5473-01 2 141130580 141130580 G T LRP1B Missense_Mutation p.P3589T 0.34 possibly_damaging(0.641) TCGA-22-5473-01 2 145157151 145157151 C T ZEB2 Missense_Mutation p.E535K 0.21 tolerated(0.08) probably_damaging(0.995) TCGA-22-5473-01 2 151343232 151343232 C A RND3 Nonsense_Mutation p.E72* 0.16 TCGA-22-5473-01 2 153528972 153528972 C G PRPF40A Splice_Site p.X457_splice 0.29 TCGA-22-5473-01 2 15415804 15415804 G A NBAS Missense_Mutation p.P1843L 0.20 deleterious(0) possibly_damaging(0.747) TCGA-22-5473-01 2 155265537 155265537 C T GALNT13 Silent p.G446G 0.19 TCGA-22-5473-01 2 158152278 158152278 A G GALNT5 Silent p.P615P 0.39 TCGA-22-5473-01 2 163076375 163076375 A C FAP Silent p.V158V 0.17 TCGA-22-5473-01 2 163228560 163228560 C T KCNH7 Missense_Mutation p.E1124K 0.24 deleterious(0.01) benign(0.007) TCGA-22-5473-01 2 164467083 164467083 C A FIGN Missense_Mutation p.G420V 0.33 tolerated(0.12) benign(0.009) TCGA-22-5473-01 2 164467084 164467084 C A FIGN Missense_Mutation p.G420W 0.33 deleterious(0) possibly_damaging(0.787) TCGA-22-5473-01 2 1652885 1652885 C T PXDN Missense_Mutation p.M889I 0.14 deleterious(0.03) benign(0.042) TCGA-22-5473-01 2 166900541 166900541 C A SCN1A Missense_Mutation p.G561C 0.21 deleterious(0) probably_damaging(1) TCGA-22-5473-01 2 168103509 168103509 A T XIRP2 Silent p.L1869L 0.15 TCGA-22-5473-01 2 169836446 169836446 G C ABCB11 Missense_Mutation p.A376G 0.15 deleterious(0.03) benign(0.371) TCGA-22-5473-01 2 170062105 170062105 C G LRP2 Missense_Mutation p.E2533D 0.18 probably_damaging(0.995) TCGA-22-5473-01 2 170806565 170806565 A G UBR3 Missense_Mutation p.K1179E 0.22 deleterious(0) probably_damaging(0.986) TCGA-22-5473-01 2 173349611 173349611 G C ITGA6 Missense_Mutation p.E551Q 0.26 tolerated(0.14) benign(0.005) TCGA-22-5473-01 2 175427246 175427246 G C WIPF1 3'UTR 0.24 TCGA-22-5473-01 2 178098968 178098968 T G NFE2L2 Missense_Mutation p.Q26P 0.17 deleterious(0) probably_damaging(0.999) TCGA-22-5473-01 2 179238668 179238668 G A OSBPL6 Missense_Mutation p.E508K 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-22-5473-01 2 179400936 179400936 G A TTN Missense_Mutation p.A33513V 0.18 TCGA-22-5473-01 2 179402377 179402377 C T TTN Missense_Mutation p.S33186N 0.18 TCGA-22-5473-01 2 179403447 179403447 A G TTN Missense_Mutation p.Y33037H 0.40 TCGA-22-5473-01 2 179431323 179431323 G A TTN Silent p.I26512I 0.23 TCGA-22-5473-01 2 179443940 179443940 G T TTN Missense_Mutation p.T22606K 0.41 TCGA-22-5473-01 2 179444806 179444806 G T TTN Missense_Mutation p.T22403K 0.27 TCGA-22-5473-01 2 179479049 179479049 C G TTN Missense_Mutation p.D16359H 0.21 TCGA-22-5473-01 2 179532008 179532008 G C TTN Missense_Mutation p.P11918A 0.12 TCGA-22-5473-01 2 179605624 179605624 C T TTN Silent p.Q4112Q 0.23 TCGA-22-5473-01 2 180310440 180310440 G T ZNF385B Missense_Mutation p.T311N 0.25 tolerated(0.16) probably_damaging(0.999) TCGA-22-5473-01 2 180810308 180810308 C T CWC22 Missense_Mutation p.E759K 0.15 deleterious_low_confidence(0.01) benign(0.242) TCGA-22-5473-01 2 182363449 182363449 G A ITGA4 Missense_Mutation p.S547N 0.40 tolerated(0.42) benign(0.014) TCGA-22-5473-01 2 182543437 182543437 C A NEUROD1 Missense_Mutation p.D51Y 0.23 deleterious(0.03) possibly_damaging(0.543) TCGA-22-5473-01 2 183902800 183902800 G A NCKAP1 Nonsense_Mutation p.Q10* 0.17 TCGA-22-5473-01 2 185802654 185802654 C T ZNF804A Missense_Mutation p.P844L 0.40 tolerated(0.66) benign(0.023) TCGA-22-5473-01 2 188250347 188250347 G A CALCRL 5'UTR 0.21 TCGA-22-5473-01 2 1893045 1893045 T C MYT1L Missense_Mutation p.R828G 0.17 deleterious(0.05) benign(0.003) TCGA-22-5473-01 2 189899670 189899670 C G COL5A2 Missense_Mutation p.R1442P 0.13 unknown(0) TCGA-22-5473-01 2 190532308 190532308 C T ASNSD1 Nonsense_Mutation p.Q484* 0.21 TCGA-22-5473-01 2 191862686 191862686 G T STAT1 Silent p.T227T 0.19 TCGA-22-5473-01 2 196664154 196664154 G T DNAH7 Missense_Mutation p.R3407S 0.39 tolerated(0.06) benign(0.231) TCGA-22-5473-01 2 197092865 197092865 A G HECW2 Missense_Mutation p.I1293T 0.47 deleterious(0) probably_damaging(0.997) TCGA-22-5473-01 2 198288681 198288681 G A SF3B1 Nonsense_Mutation p.R16* 0.21 TCGA-22-5473-01 2 201477417 201477417 G A AOX1 Missense_Mutation p.G450E 0.42 tolerated(1) benign(0.009) TCGA-22-5473-01 2 20205673 20205673 C A MATN3 Missense_Mutation p.A208S 0.40 deleterious(0.01) benign(0.303) TCGA-22-5473-01 2 202569893 202569893 C T ALS2 Missense_Mutation p.A1553T 0.23 tolerated(0.28) benign(0.043) TCGA-22-5473-01 2 207017163 207017163 G C NDUFS1 Missense_Mutation p.P59A 0.17 tolerated(0.69) benign(0.068) TCGA-22-5473-01 2 208866341 208866341 T A PLEKHM3 Missense_Mutation p.D8V 0.44 deleterious(0) probably_damaging(0.999) TCGA-22-5473-01 2 210888807 210888807 C A KANSL1L Missense_Mutation p.D895Y 0.23 deleterious(0.02) benign(0.272) TCGA-22-5473-01 2 21242603 21242603 C T APOB Silent p.G997G 0.13 TCGA-22-5473-01 2 21250864 21250864 G A APOB Missense_Mutation p.R635W 0.21 probably_damaging(0.966) TCGA-22-5473-01 2 212566848 212566848 G A ERBB4 Silent p.L445L 0.25 TCGA-22-5473-01 2 216247016 216247016 G T FN1 Missense_Mutation p.P1695T 0.45 deleterious(0.01) probably_damaging(1) TCGA-22-5473-01 2 216285475 216285475 G C FN1 Missense_Mutation p.H532Q 0.20 tolerated(0.5) probably_damaging(0.955) TCGA-22-5473-01 2 219544402 219544402 C T STK36 Missense_Mutation p.R300C 0.25 deleterious(0.02) benign(0.014) TCGA-22-5473-01 2 224642556 224642556 C T AP1S3 Missense_Mutation p.G12R 0.19 deleterious(0) probably_damaging(1) TCGA-22-5473-01 2 225710006 225710006 G C DOCK10 Missense_Mutation p.Q799E 0.16 deleterious(0) benign(0.079) TCGA-22-5473-01 2 226516161 226516161 C A NYAP2 Missense_Mutation p.S614R 0.42 tolerated_low_confidence(0.06) possibly_damaging(0.782) TCGA-22-5473-01 2 228882159 228882159 C T SPHKAP Missense_Mutation p.M1137I 0.51 deleterious(0) probably_damaging(0.998) TCGA-22-5473-01 2 228884681 228884681 G T SPHKAP Missense_Mutation p.Q297K 0.20 tolerated(0.23) benign(0.002) TCGA-22-5473-01 2 230312225 230312225 C A DNER Silent p.V431V 0.31 TCGA-22-5473-01 2 232653351 232653351 G C COPS7B Missense_Mutation p.G24A 0.26 deleterious(0) probably_damaging(0.996) TCGA-22-5473-01 2 233349770 233349770 C T ECEL1 Missense_Mutation p.R296Q 0.18 tolerated(0.2) possibly_damaging(0.45) TCGA-22-5473-01 2 234545255 234545255 G C UGT1A10 Silent p.L29L 0.21 TCGA-22-5473-01 2 235951264 235951264 C G SH3BP4 Missense_Mutation p.I617M 0.25 tolerated(0.11) benign(0.004) TCGA-22-5473-01 2 237489155 237489155 A T ACKR3 Missense_Mutation p.D16V 0.10 deleterious(0.01) possibly_damaging(0.545) TCGA-22-5473-01 2 239988490 239988490 G A HDAC4 Silent p.L972L 0.28 TCGA-22-5473-01 2 241685277 241685277 C A KIF1A Silent p.L1084L 0.23 TCGA-22-5473-01 2 242078087 242078087 C A PASK Missense_Mutation p.W241C 0.17 tolerated(0.26) benign(0.258) TCGA-22-5473-01 2 242402762 242402762 G T FARP2 Missense_Mutation p.A564S 0.21 deleterious(0.04) probably_damaging(0.933) TCGA-22-5473-01 2 242402840 242402841 - A FARP2 Frame_Shift_Ins p.H590Qfs*52 0.13 TCGA-22-5473-01 2 242407695 242407695 G T FARP2 Silent p.L678L 0.51 TCGA-22-5473-01 2 242758331 242758331 C A NEU4 Missense_Mutation p.P484H 0.27 deleterious(0.03) benign(0.034) TCGA-22-5473-01 2 26496613 26496613 A G HADHB Missense_Mutation p.R117G 0.35 deleterious(0) possibly_damaging(0.895) TCGA-22-5473-01 2 27372107 27372107 C T TCF23 Missense_Mutation p.R36C 0.18 tolerated(0.06) benign(0.023) TCGA-22-5473-01 2 27446828 27446828 G C CAD Missense_Mutation p.E347Q 0.17 deleterious(0.01) probably_damaging(0.983) TCGA-22-5473-01 2 27746377 27746377 G T GCKR 3'UTR 0.39 TCGA-22-5473-01 2 32517379 32517379 C G YIPF4 Missense_Mutation p.L123V 0.13 tolerated(0.08) benign(0.11) TCGA-22-5473-01 2 33411937 33411937 C G LTBP1 Missense_Mutation p.P406A 0.13 deleterious(0) probably_damaging(0.994) TCGA-22-5473-01 2 33783912 33783912 G T RASGRP3 Missense_Mutation p.D627Y 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.718) TCGA-22-5473-01 2 33952197 33952197 G T AC009499.1 Intron 0.38 TCGA-22-5473-01 2 37475350 37475350 C A NDUFAF7 Missense_Mutation p.P395T 0.15 deleterious(0.03) benign(0.076) TCGA-22-5473-01 2 43937375 43937375 C T PLEKHH2 Missense_Mutation p.S707F 0.20 deleterious(0) benign(0.2) TCGA-22-5473-01 2 44065709 44065709 C A ABCG5 Missense_Mutation p.S37I 0.23 deleterious(0.01) possibly_damaging(0.729) TCGA-22-5473-01 2 44502654 44502654 G A SLC3A1 5'UTR 0.23 TCGA-22-5473-01 2 48925888 48925888 G T LHCGR Silent p.S244S 0.33 TCGA-22-5473-01 2 51254958 51254958 C T NRXN1 Missense_Mutation p.G152S 0.21 deleterious(0.02) benign(0.002) TCGA-22-5473-01 2 54127089 54127089 C G PSME4 Missense_Mutation p.Q1117H 0.14 tolerated(0.56) benign(0.042) TCGA-22-5473-01 2 55804451 55804451 C A SMEK2 Missense_Mutation p.D536Y 0.17 deleterious(0) possibly_damaging(0.619) TCGA-22-5473-01 2 61753653 61753653 T C XPO1 Missense_Mutation p.R44G 0.17 deleterious(0.01) benign(0.329) TCGA-22-5473-01 2 669511 669511 G A TMEM18 3'UTR 0.23 TCGA-22-5473-01 2 71060876 71060876 C A CD207 Nonsense_Mutation p.E156* 0.16 TCGA-22-5473-01 2 71753408 71753408 C A DYSF Missense_Mutation p.P403H 0.10 deleterious(0) probably_damaging(1) TCGA-22-5473-01 2 73635786 73635786 G A ALMS1 Missense_Mutation p.V121I 0.40 benign(0.009) TCGA-22-5473-01 2 74087236 74087236 G A STAMBP Silent p.Q392Q 0.21 TCGA-22-5473-01 2 74128523 74128523 C T ACTG2 Missense_Mutation p.R29W 0.18 deleterious_low_confidence(0.02) benign(0.015) TCGA-22-5473-01 2 74425790 74425790 T C MTHFD2 Missense_Mutation p.S8P 0.32 tolerated_low_confidence(0.07) unknown(0) TCGA-22-5473-01 2 74682983 74682983 C T INO80B Missense_Mutation p.S97L 0.17 deleterious(0.05) probably_damaging(0.977) TCGA-22-5473-01 2 76975781 76975781 C - LRRTM4 3'UTR 0.40 TCGA-22-5473-01 2 77746506 77746506 G C LRRTM4 Missense_Mutation p.H163Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-22-5473-01 2 79314036 79314036 G T REG1B Missense_Mutation p.L29M 0.32 tolerated(0.12) benign(0.221) TCGA-22-5473-01 2 79350321 79350321 G C REG1A Missense_Mutation p.V161L 0.18 deleterious(0) possibly_damaging(0.504) TCGA-22-5473-01 2 79365096 79365096 G T REG1P RNA 0.29 TCGA-22-5473-01 2 79385884 79385884 G C REG3A Missense_Mutation p.Q30E 0.26 tolerated(0.16) benign(0.006) TCGA-22-5473-01 2 85051322 85051322 C T TRABD2A Silent p.K314K 0.20 TCGA-22-5473-01 2 88484972 88484972 C A THNSL2 Nonsense_Mutation p.Y401* 0.19 TCGA-22-5473-01 2 88874576 88874576 C T EIF2AK3 Missense_Mutation p.E809K 0.15 tolerated(0.05) possibly_damaging(0.517) TCGA-22-5473-01 2 88890072 88890072 G C EIF2AK3 Missense_Mutation p.P352A 0.20 deleterious(0.02) possibly_damaging(0.616) TCGA-22-5473-01 2 89976268 89976268 C G IGKV2D-30 Missense_Mutation p.Q47E 0.24 tolerated(0.11) benign(0.021) TCGA-22-5473-01 2 90193250 90193250 G T IGKV1D-13 Missense_Mutation p.Q59H 0.18 deleterious(0.02) benign(0.292) TCGA-22-5473-01 2 95515006 95515006 T A RNU6-1320P 5'Flank 0.13 TCGA-22-5473-01 2 97019078 97019078 C G NCAPH Missense_Mutation p.I315M 0.16 deleterious(0) possibly_damaging(0.861) TCGA-22-5473-01 2 98744705 98744705 G A VWA3B Missense_Mutation p.E236K 0.33 deleterious(0) probably_damaging(0.995) TCGA-22-5473-01 2 98744741 98744741 G T VWA3B Nonsense_Mutation p.E248* 0.18 TCGA-22-5473-01 2 98797605 98797605 C T VWA3B Missense_Mutation p.S414F 0.19 deleterious(0) possibly_damaging(0.786) TCGA-22-5473-01 2 99443447 99443447 C T KIAA1211L Silent p.R242R 0.37 TCGA-22-5473-01 3 100065092 100065092 A C NIT2 Silent p.A166A 0.45 TCGA-22-5473-01 3 10283900 10283900 C G IRAK2 Silent p.L622L 0.25 TCGA-22-5473-01 3 105264115 105264115 G T ALCAM Missense_Mutation p.G347V 0.33 deleterious(0) probably_damaging(1) TCGA-22-5473-01 3 108406926 108406926 G A DZIP3 Missense_Mutation p.D1085N 0.19 tolerated(0.16) benign(0.04) TCGA-22-5473-01 3 108725873 108725873 C T MORC1 Intron 0.11 TCGA-22-5473-01 3 108788596 108788596 G T MORC1 Missense_Mutation p.A233E 0.25 tolerated(1) benign(0) TCGA-22-5473-01 3 109023453 109023453 C A DPPA2 Silent p.L241L 0.36 TCGA-22-5473-01 3 11072947 11072947 T A SLC6A1 Missense_Mutation p.S470T 0.55 tolerated(0.14) probably_damaging(0.947) TCGA-22-5473-01 3 119133799 119133799 G C ARHGAP31 Missense_Mutation p.R1008T 0.26 deleterious(0.04) benign(0.046) TCGA-22-5473-01 3 119211167 119211167 A T POGLUT1 Missense_Mutation p.D354V 0.41 deleterious(0) probably_damaging(0.993) TCGA-22-5473-01 3 119466000 119466000 A G MAATS1 Silent p.L647L 0.24 TCGA-22-5473-01 3 123046520 123046520 T A ADCY5 Missense_Mutation p.Y631F 0.18 tolerated(0.05) possibly_damaging(0.761) TCGA-22-5473-01 3 123419609 123419609 C - MYLK Frame_Shift_Del p.K903Rfs*3 0.30 TCGA-22-5473-01 3 127379811 127379811 G T PODXL2 Missense_Mutation p.A314S 0.24 tolerated(0.49) benign(0.015) TCGA-22-5473-01 3 133494302 133494302 G A TF Silent p.K571K 0.22 TCGA-22-5473-01 3 134197492 134197492 C T ANAPC13 Missense_Mutation p.M55I 0.22 tolerated(0.14) benign(0.004) TCGA-22-5473-01 3 134873025 134873025 C G EPHB1 Silent p.V443V 0.14 TCGA-22-5473-01 3 137483679 137483679 G T SOX14 Missense_Mutation p.W18L 0.29 deleterious(0) probably_damaging(1) TCGA-22-5473-01 3 140277540 140277540 C A CLSTN2 Missense_Mutation p.L628I 0.22 deleterious(0) benign(0.267) TCGA-22-5473-01 3 1424694 1424694 G - CNTN6 Frame_Shift_Del p.T746Qfs*44 0.46 TCGA-22-5473-01 3 142681231 142681231 G C PAQR9 Missense_Mutation p.I316M 0.21 deleterious(0.02) possibly_damaging(0.801) TCGA-22-5473-01 3 146173175 146173175 C A PLSCR2 Missense_Mutation p.A131S 0.22 tolerated(0.07) possibly_damaging(0.476) TCGA-22-5473-01 3 147127995 147127995 C A ZIC1 Missense_Mutation p.D32E 0.27 tolerated(0.77) benign(0.003) TCGA-22-5473-01 3 149089334 149089334 A T TM4SF1 Intron 0.20 TCGA-22-5473-01 3 150690483 150690483 G C CLRN1 Missense_Mutation p.Q5E 0.12 deleterious(0.04) possibly_damaging(0.792) TCGA-22-5473-01 3 152132854 152132854 T C MBNL1 Missense_Mutation p.M100T 0.43 deleterious(0) benign(0.209) TCGA-22-5473-01 3 15686066 15686066 C T BTD Missense_Mutation p.P235S 0.39 tolerated(0.19) probably_damaging(1) TCGA-22-5473-01 3 157820615 157820615 G A SHOX2 Missense_Mutation p.T160I 0.43 deleterious(0) possibly_damaging(0.877) TCGA-22-5473-01 3 164714433 164714433 C A SI Missense_Mutation p.A1528S 0.52 tolerated(0.06) probably_damaging(0.968) TCGA-22-5473-01 3 164764675 164764675 C G SI Missense_Mutation p.W614S 0.08 deleterious(0.02) benign(0.142) TCGA-22-5473-01 3 164786965 164786965 C A SI Missense_Mutation p.G92C 0.07 deleterious(0) possibly_damaging(0.772) TCGA-22-5473-01 3 164905964 164905964 T C SLITRK3 Silent p.L885L 0.08 TCGA-22-5473-01 3 164906343 164906343 C A SLITRK3 Missense_Mutation p.R759L 0.11 deleterious(0.01) benign(0.35) TCGA-22-5473-01 3 167045853 167045853 G C ZBBX Missense_Mutation p.L247V 0.11 tolerated(0.14) possibly_damaging(0.709) TCGA-22-5473-01 3 170079108 170079108 A T SKIL Missense_Mutation p.H330L 0.14 tolerated(1) probably_damaging(0.994) TCGA-22-5473-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.38 deleterious(0.04) probably_damaging(0.96) TCGA-22-5473-01 3 183907053 183907053 C - ABCF3 Frame_Shift_Del p.L349Cfs*3 0.09 TCGA-22-5473-01 3 184870595 184870595 G A C3orf70 Missense_Mutation p.S6L 0.07 deleterious_low_confidence(0.02) benign(0.001) TCGA-22-5473-01 3 185169181 185169181 C G MAP3K13 Missense_Mutation p.Q426E 0.42 deleterious(0) probably_damaging(0.997) TCGA-22-5473-01 3 185347593 185347593 G C SENP2 Missense_Mutation p.K577N 0.13 deleterious(0) probably_damaging(0.999) TCGA-22-5473-01 3 186333536 186333536 G T AHSG Silent p.L92L 0.69 TCGA-22-5473-01 3 191075833 191075833 G A CCDC50 Silent p.Q53Q 0.10 TCGA-22-5473-01 3 194147892 194147892 G C ATP13A3 Missense_Mutation p.Q1013E 0.07 deleterious(0.02) possibly_damaging(0.566) TCGA-22-5473-01 3 195611843 195611843 C A TNK2 Missense_Mutation p.R162L 0.11 tolerated(0.07) possibly_damaging(0.573) TCGA-22-5473-01 3 197566206 197566206 G A LRCH3 Silent p.K422K 0.54 TCGA-22-5473-01 3 24188169 24188169 C T THRB Missense_Mutation p.D177N 0.31 deleterious(0) probably_damaging(0.963) TCGA-22-5473-01 3 27329226 27329226 A C NEK10 Missense_Mutation p.H584Q 0.23 deleterious(0) probably_damaging(0.929) TCGA-22-5473-01 3 38770276 38770276 A T SCN10A Missense_Mutation p.F799L 0.67 deleterious(0.01) possibly_damaging(0.841) TCGA-22-5473-01 3 44776538 44776538 G A ZNF501 Missense_Mutation p.E209K 0.24 deleterious_low_confidence(0.02) benign(0.285) TCGA-22-5473-01 3 46245770 46245770 G T CCR1 Missense_Mutation p.T12K 0.68 tolerated(0.87) unknown(0) TCGA-22-5473-01 3 4808361 4808361 G C ITPR1 Missense_Mutation p.E1883Q 0.40 tolerated(0.13) benign(0.014) TCGA-22-5473-01 3 48607181 48607181 T C COL7A1 Missense_Mutation p.S2512G 0.26 benign(0.127) TCGA-22-5473-01 3 49055175 49055175 C G DALRD3 Missense_Mutation p.E197Q 0.36 tolerated(0.27) benign(0.032) TCGA-22-5473-01 3 49928829 49928829 G A MST1R Intron 0.22 TCGA-22-5473-01 3 50330709 50330709 C G HYAL3 Missense_Mutation p.E408Q 0.23 tolerated(0.17) benign(0.012) TCGA-22-5473-01 3 52356682 52356682 G T DNAH1 Missense_Mutation p.G75V 0.61 benign(0.25) TCGA-22-5473-01 3 57488140 57488140 G A DNAH12 Missense_Mutation p.P385S 0.59 tolerated(0.06) possibly_damaging(0.511) TCGA-22-5473-01 3 58377548 58377548 C G PXK Missense_Mutation p.L197V 0.15 tolerated(1) benign(0.003) TCGA-22-5473-01 3 58849464 58849464 C T C3orf67 Silent p.Q346Q 0.16 TCGA-22-5473-01 3 73453457 73453457 C G PDZRN3 Missense_Mutation p.L336F 0.30 deleterious(0.01) probably_damaging(0.993) TCGA-22-5473-01 3 89390085 89390085 C T EPHA3 Silent p.Y278Y 0.40 TCGA-22-5473-01 3 93615477 93615477 G A PROS1 Missense_Mutation p.A303V 0.19 deleterious(0) possibly_damaging(0.716) TCGA-22-5473-01 3 96533423 96533423 C A EPHA6 5'Flank 0.30 TCGA-22-5473-01 3 97194254 97194254 C A EPHA6 Silent p.G651G 0.28 TCGA-22-5473-01 4 101950344 101950344 C G PPP3CA Missense_Mutation p.E450Q 0.17 tolerated(0.17) possibly_damaging(0.597) TCGA-22-5473-01 4 106155127 106155127 G C TET2 Missense_Mutation p.E10Q 0.48 deleterious(0) possibly_damaging(0.556) TCGA-22-5473-01 4 118975437 118975437 G A NDST3 Missense_Mutation p.M124I 0.07 deleterious(0.04) benign(0) TCGA-22-5473-01 4 119252905 119252905 C G PRSS12 Missense_Mutation p.D313H 0.06 deleterious(0) probably_damaging(0.999) TCGA-22-5473-01 4 119653922 119653922 G C SEC24D Missense_Mutation p.S881C 0.06 deleterious(0) probably_damaging(0.994) TCGA-22-5473-01 4 122846259 122846259 G C TRPC3 Missense_Mutation p.L364V 0.57 tolerated(0.48) benign(0) TCGA-22-5473-01 4 126371354 126371354 A G FAT4 Silent p.A3061A 0.50 TCGA-22-5473-01 4 145038082 145038082 G C GYPA Silent p.L94L 0.25 TCGA-22-5473-01 4 147431098 147431098 G A SLC10A7 Missense_Mutation p.S96L 0.05 tolerated(0.1) benign(0.015) TCGA-22-5473-01 4 158257696 158257696 G A GRIA2 Nonsense_Mutation p.W547* 0.53 TCGA-22-5473-01 4 164450146 164450146 G C MARCH1 Missense_Mutation p.F208L 0.23 tolerated(0.13) benign(0.011) TCGA-22-5473-01 4 169342981 169342981 G T DDX60L Missense_Mutation p.S775Y 0.08 deleterious(0) probably_damaging(0.998) TCGA-22-5473-01 4 170989782 170989782 T A AADAT Missense_Mutation p.H287L 0.48 deleterious(0) probably_damaging(1) TCGA-22-5473-01 4 17581491 17581491 G T LAP3 Silent p.V49V 0.53 TCGA-22-5473-01 4 178260984 178260984 A T NEIL3 Silent p.I225I 0.40 TCGA-22-5473-01 4 26641807 26641807 G C TBC1D19 Missense_Mutation p.E160Q 0.27 deleterious(0.01) possibly_damaging(0.878) TCGA-22-5473-01 4 366586 366586 G A ZNF141 Silent p.L120L 0.29 TCGA-22-5473-01 4 46043100 46043100 G A GABRG1 Missense_Mutation p.R435C 0.59 deleterious(0.03) possibly_damaging(0.84) TCGA-22-5473-01 4 52894207 52894207 C A SGCB Missense_Mutation p.R227L 0.60 tolerated(0.1) benign(0.443) TCGA-22-5473-01 4 55593588 55593588 A T KIT Missense_Mutation p.M552L 0.51 deleterious(0.04) benign(0.05) TCGA-22-5473-01 4 55961110 55961110 G T KDR Silent p.R944R 0.65 TCGA-22-5473-01 4 62758438 62758438 A G LPHN3 Silent p.T447T 0.56 TCGA-22-5473-01 4 70160366 70160366 C T UGT2B28 Nonsense_Mutation p.R477* 0.55 TCGA-22-5473-01 4 74441923 74441924 AA - RASSF6 3'UTR 0.38 TCGA-22-5473-01 4 7726979 7726979 A G SORCS2 Missense_Mutation p.T904A 0.44 tolerated(0.54) possibly_damaging(0.688) TCGA-22-5473-01 4 89618712 89618712 G T NAP1L5 Missense_Mutation p.P65Q 0.51 tolerated(0.14) possibly_damaging(0.896) TCGA-22-5473-01 4 96140340 96140340 G - UNC5C Frame_Shift_Del p.N476Tfs*2 0.41 TCGA-22-5473-01 5 101597671 101597671 C G SLCO4C1 Missense_Mutation p.W322C 0.20 tolerated(0.24) benign(0.022) TCGA-22-5473-01 5 11384826 11384826 C A CTNND2 Silent p.S376S 0.25 TCGA-22-5473-01 5 131607158 131607158 C T PDLIM4 Silent p.G223G 0.57 TCGA-22-5473-01 5 13735261 13735261 C T DNAH5 Missense_Mutation p.E3914K 0.21 benign(0.292) TCGA-22-5473-01 5 138717664 138717664 G T SLC23A1 Missense_Mutation p.D75E 0.67 tolerated(0.06) benign(0.044) TCGA-22-5473-01 5 139722236 139722236 G A HBEGF Missense_Mutation p.R128W 0.58 deleterious(0) probably_damaging(0.991) TCGA-22-5473-01 5 140056274 140056274 C G HARS Missense_Mutation p.E387Q 0.05 deleterious(0) probably_damaging(1) TCGA-22-5473-01 5 140516142 140516142 G A PCDHB5 Missense_Mutation p.D376N 0.61 tolerated_low_confidence(0.21) benign(0.01) TCGA-22-5473-01 5 140537838 140537838 G T PCDHB17 3'UTR 0.58 TCGA-22-5473-01 5 140588428 140588428 G T PCDHB12 5'UTR 0.47 TCGA-22-5473-01 5 140590159 140590159 C T PCDHB12 Silent p.F560F 0.30 TCGA-22-5473-01 5 140590553 140590553 G C PCDHB12 Missense_Mutation p.V692L 0.56 deleterious_low_confidence(0) benign(0.126) TCGA-22-5473-01 5 140720617 140720617 G T PCDHGA2 Silent p.L693L 0.49 TCGA-22-5473-01 5 140724255 140724255 G C PCDHGA3 Missense_Mutation p.D219H 0.60 deleterious_low_confidence(0.02) benign(0.155) TCGA-22-5473-01 5 140735547 140735547 G T PCDHGA4 Silent p.R260R 0.56 TCGA-22-5473-01 5 150928976 150928976 G C FAT2 Missense_Mutation p.Q1557E 0.56 benign(0.071) TCGA-22-5473-01 5 154311721 154311721 G C GEMIN5 Missense_Mutation p.S200C 0.25 tolerated(0.21) benign(0.075) TCGA-22-5473-01 5 156021941 156021941 G T SGCD Splice_Site p.X128_splice 0.70 TCGA-22-5473-01 5 159680314 159680314 G A CCNJL 3'UTR 0.21 TCGA-22-5473-01 5 167991022 167991022 A G PANK3 Silent p.C228C 0.29 TCGA-22-5473-01 5 176911113 176911113 T G PDLIM7 Silent p.R377R 0.58 TCGA-22-5473-01 5 176931332 176931332 G A DOK3 Silent p.Y381Y 0.62 TCGA-22-5473-01 5 19544068 19544068 C T CDH18 Missense_Mutation p.D434N 0.59 tolerated(0.41) probably_damaging(0.975) TCGA-22-5473-01 5 26915837 26915837 C A CDH9 Nonsense_Mutation p.E142* 0.52 TCGA-22-5473-01 5 2748758 2748758 G A IRX2 Missense_Mutation p.P355L 0.67 tolerated(0.24) benign(0.043) TCGA-22-5473-01 5 33624408 33624408 A T ADAMTS12 Missense_Mutation p.C691S 0.50 deleterious(0) probably_damaging(0.999) TCGA-22-5473-01 5 33938175 33938175 G T RXFP3 Missense_Mutation p.D444Y 0.49 deleterious(0) possibly_damaging(0.653) TCGA-22-5473-01 5 35966004 35966004 G A UGT3A1 Silent p.A109A 0.46 TCGA-22-5473-01 5 38407204 38407204 G A EGFLAM Missense_Mutation p.R368Q 0.12 tolerated(0.06) benign(0.426) TCGA-22-5473-01 5 38458495 38458495 A C EGFLAM Silent p.R932R 0.35 TCGA-22-5473-01 5 39110483 39110483 C A FYB Missense_Mutation p.V814F 0.38 deleterious(0) possibly_damaging(0.864) TCGA-22-5473-01 5 40681542 40681542 C T PTGER4 Silent p.L149L 0.31 TCGA-22-5473-01 5 40947703 40947703 G T C7 Splice_Site p.X247_splice 0.40 TCGA-22-5473-01 5 41181509 41181509 G T C6 Silent p.I293I 0.30 TCGA-22-5473-01 5 44388623 44388623 G T FGF10 Silent p.S54S 0.49 TCGA-22-5473-01 5 54528254 54528254 T A CCNO Missense_Mutation p.T168S 0.54 tolerated(0.07) possibly_damaging(0.511) TCGA-22-5473-01 5 60195503 60195503 C G ERCC8 Missense_Mutation p.L223F 0.18 deleterious(0.02) possibly_damaging(0.721) TCGA-22-5473-01 5 63257310 63257310 C T HTR1A Silent p.A79A 0.10 TCGA-22-5473-01 5 72850214 72850214 C T ANKRA2 Splice_Site p.X247_splice 0.08 TCGA-22-5473-01 5 7717318 7717318 G C ADCY2 Missense_Mutation p.M557I 0.07 tolerated(0.07) benign(0.029) TCGA-22-5473-01 5 77334916 77334916 C T AP3B1 Silent p.G920G 0.49 TCGA-22-5473-01 5 90459686 90459686 G T GPR98 Missense_Mutation p.R6297M 0.41 possibly_damaging(0.831) TCGA-22-5473-01 5 9227044 9227044 C A SEMA5A Silent p.V123V 0.20 TCGA-22-5473-01 5 9629785 9629785 C A TAS2R1 Missense_Mutation p.M120I 0.29 tolerated(0.14) benign(0.133) TCGA-22-5473-01 6 106536322 106536322 G A PRDM1 Missense_Mutation p.E97K 0.19 deleterious(0.01) benign(0.213) TCGA-22-5473-01 6 10874708 10874708 G A GCM2 Silent p.N347N 0.65 TCGA-22-5473-01 6 10924825 10924825 A T SYCP2L Missense_Mutation p.Q390L 0.59 deleterious(0) probably_damaging(0.933) TCGA-22-5473-01 6 114378987 114378987 A G HS3ST5 Missense_Mutation p.Y159H 0.45 deleterious(0) probably_damaging(1) TCGA-22-5473-01 6 117700271 117700271 G C ROS1 Missense_Mutation p.Q850E 0.38 deleterious(0.01) benign(0.282) TCGA-22-5473-01 6 119281342 119281342 G C FAM184A Missense_Mutation p.Q1117E 0.10 tolerated(0.67) probably_damaging(0.92) TCGA-22-5473-01 6 123318974 123318974 C A CLVS2 Missense_Mutation p.L18M 0.41 tolerated(0.23) benign(0.141) TCGA-22-5473-01 6 123319225 123319225 G T CLVS2 Missense_Mutation p.K101N 0.45 tolerated(0.62) benign(0.21) TCGA-22-5473-01 6 123319300 123319300 G T CLVS2 Missense_Mutation p.W126C 0.47 deleterious(0) probably_damaging(0.999) TCGA-22-5473-01 6 123600200 123600200 C G TRDN Splice_Site p.X513_splice 0.35 TCGA-22-5473-01 6 129588326 129588326 C A LAMA2 Missense_Mutation p.H762N 0.44 deleterious(0) probably_damaging(1) TCGA-22-5473-01 6 132171234 132171234 T A ENPP1 Missense_Mutation p.C140S 0.24 deleterious(0) probably_damaging(1) TCGA-22-5473-01 6 132966703 132966703 C A TAAR1 Missense_Mutation p.S147I 0.37 deleterious(0.02) probably_damaging(0.984) TCGA-22-5473-01 6 132966855 132966855 A G TAAR1 Silent p.C96C 0.15 TCGA-22-5473-01 6 132967144 132967144 C G TAAR1 5'Flank 0.44 TCGA-22-5473-01 6 135239933 135239933 T A ALDH8A1 Missense_Mutation p.S362C 0.23 tolerated(0.09) possibly_damaging(0.563) TCGA-22-5473-01 6 137525569 137525569 G A IFNGR1 Missense_Mutation p.S149L 0.07 tolerated(1) benign(0) TCGA-22-5473-01 6 143091585 143091585 T A HIVEP2 Missense_Mutation p.S1431C 0.25 deleterious(0.01) benign(0.376) TCGA-22-5473-01 6 146243814 146243814 C T SHPRH Missense_Mutation p.R1235K 0.42 tolerated(0.24) benign(0.034) TCGA-22-5473-01 6 150343258 150343258 C G RAET1L Missense_Mutation p.K69N 0.23 tolerated(0.92) benign(0.085) TCGA-22-5473-01 6 152466622 152466622 C A SYNE1 Intron 0.15 TCGA-22-5473-01 6 152565699 152565699 C A SYNE1 Silent p.P6555P 0.19 TCGA-22-5473-01 6 152615100 152615100 T G SYNE1 Missense_Mutation p.N5949H 0.20 probably_damaging(0.994) TCGA-22-5473-01 6 152779985 152779985 C T SYNE1 Silent p.T825T 0.19 TCGA-22-5473-01 6 159655071 159655071 C G FNDC1 Nonsense_Mutation p.S1176* 0.15 TCGA-22-5473-01 6 161574442 161574442 G C AGPAT4 Silent p.L200L 0.12 TCGA-22-5473-01 6 168227156 168227156 C A MLLT4 5'Flank 0.20 TCGA-22-5473-01 6 169632819 169632819 G T THBS2 Silent p.P624P 0.53 TCGA-22-5473-01 6 24145857 24145857 G A NRSN1 Missense_Mutation p.E91K 0.22 deleterious(0) probably_damaging(0.999) TCGA-22-5473-01 6 26197488 26197488 C T HIST1H3D 5'UTR 0.53 TCGA-22-5473-01 6 27368701 27368701 G C ZNF391 Missense_Mutation p.Q184H 0.27 tolerated(0.26) benign(0.236) TCGA-22-5473-01 6 30131694 30131694 T C TRIM15 Missense_Mutation p.L78P 0.49 tolerated(0.26) benign(0.022) TCGA-22-5473-01 6 30131695 30131695 G T TRIM15 Silent p.L78L 0.49 TCGA-22-5473-01 6 30671759 30671759 G A MDC1 Missense_Mutation p.A1734V 0.19 deleterious(0.02) benign(0.014) TCGA-22-5473-01 6 35782501 35782501 C T LHFPL5 Silent p.F197F 0.68 TCGA-22-5473-01 6 37259053 37259053 G T TBC1D22B Missense_Mutation p.R301L 0.60 deleterious(0) probably_damaging(0.996) TCGA-22-5473-01 6 39851708 39851708 A G DAAM2 Intron 0.63 TCGA-22-5473-01 6 43155792 43155792 G T CUL9 Silent p.L641L 0.65 TCGA-22-5473-01 6 44337825 44337825 C G SPATS1 Missense_Mutation p.L245V 0.58 deleterious(0) probably_damaging(0.999) TCGA-22-5473-01 6 49582403 49582403 G A RHAG Silent p.N268N 0.52 TCGA-22-5473-01 6 49582408 49582408 G A RHAG Missense_Mutation p.L267F 0.52 tolerated(0.24) benign(0.374) TCGA-22-5473-01 6 51484067 51484067 C G PKHD1 Missense_Mutation p.G4013R 0.56 tolerated_low_confidence(0.09) benign(0.141) TCGA-22-5473-01 6 57398140 57398140 C A PRIM2 Silent p.T281T 0.23 TCGA-22-5473-01 6 66044902 66044902 A T EYS Silent p.A579A 0.17 TCGA-22-5473-01 6 66204874 66204874 C A EYS Missense_Mutation p.G144W 0.47 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-22-5473-01 6 66205409 66205409 G T EYS 5'UTR 0.31 TCGA-22-5473-01 6 70610181 70610181 G A COL19A1 Missense_Mutation p.D73N 0.51 deleterious(0.01) unknown(0) TCGA-22-5473-01 6 70983776 70983776 C T COL9A1 Missense_Mutation p.G347S 0.39 probably_damaging(1) TCGA-22-5473-01 6 72806703 72806703 G A RIMS1 Silent p.G99G 0.17 TCGA-22-5473-01 6 73102502 73102502 C A RIMS1 Silent p.T1536T 0.40 TCGA-22-5473-01 6 74079480 74079480 C A OOEP Silent p.R12R 0.15 TCGA-22-5473-01 6 75796183 75796183 T C COL12A1 3'UTR 0.13 TCGA-22-5473-01 6 76022205 76022205 G A FILIP1 Missense_Mutation p.H1115Y 0.20 tolerated(0.07) benign(0.034) TCGA-22-5473-01 6 83906070 83906070 G - RWDD2A 3'UTR 0.14 TCGA-22-5473-01 6 84366499 84366499 T A SNAP91 Missense_Mutation p.Y211F 0.20 deleterious(0) unknown(0) TCGA-22-5473-01 6 90362722 90362722 T C MDN1 Missense_Mutation p.T5272A 0.16 unknown(0) TCGA-22-5473-01 6 96973248 96973248 G A UFL1 Missense_Mutation p.V110M 0.42 deleterious(0) probably_damaging(0.926) TCGA-22-5473-01 7 100029210 100029210 C T MEPCE Silent p.F523F 0.23 TCGA-22-5473-01 7 100473227 100473227 G A SRRT Missense_Mutation p.D6N 0.13 deleterious(0.01) unknown(0) TCGA-22-5473-01 7 100681213 100681213 G - MUC17 Frame_Shift_Del p.V2173Wfs*20 0.16 TCGA-22-5473-01 7 102584869 102584869 C G LRRC17 Missense_Mutation p.P381A 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-22-5473-01 7 102665558 102665558 C T FBXL13 Silent p.E149E 0.53 TCGA-22-5473-01 7 106513008 106513008 T G PIK3CG Missense_Mutation p.D674E 0.12 deleterious(0) probably_damaging(0.999) TCGA-22-5473-01 7 108524212 108524212 G T C7orf66 Nonsense_Mutation p.S67* 0.37 TCGA-22-5473-01 7 11209150 11209150 A T PHF14 3'Flank 0.81 TCGA-22-5473-01 7 117149087 117149087 G T CFTR Splice_Site p.X55_splice 0.37 TCGA-22-5473-01 7 127223192 127223192 C T GCC1 Missense_Mutation p.D402N 0.13 deleterious(0) probably_damaging(0.983) TCGA-22-5473-01 7 129125498 129125498 G A STRIP2 Missense_Mutation p.R778H 0.34 deleterious(0) probably_damaging(0.947) TCGA-22-5473-01 7 133580390 133580390 G A EXOC4 Silent p.L591L 0.04 TCGA-22-5473-01 7 134873261 134873261 G C WDR91 Missense_Mutation p.A602G 0.19 deleterious(0.01) probably_damaging(0.994) TCGA-22-5473-01 7 138591781 138591781 G A KIAA1549 Missense_Mutation p.A1115V 0.07 deleterious(0.02) probably_damaging(0.97) TCGA-22-5473-01 7 141952369 141952369 C G PRSS58 Missense_Mutation p.D167H 0.11 tolerated(0.06) possibly_damaging(0.653) TCGA-22-5473-01 7 141955036 141955036 T A PRSS58 Missense_Mutation p.H92L 0.21 tolerated(0.14) benign(0.032) TCGA-22-5473-01 7 142457345 142457345 C T PRSS1 Missense_Mutation p.L4F 0.17 tolerated(0.42) benign(0.008) TCGA-22-5473-01 7 143080171 143080171 C T ZYX Missense_Mutation p.P260L 0.29 tolerated(0.08) benign(0.228) TCGA-22-5473-01 7 143096484 143096484 C T EPHA1 Silent p.R286R 0.25 TCGA-22-5473-01 7 143453990 143453990 G A CTAGE6 Silent p.H254H 0.15 TCGA-22-5473-01 7 146829458 146829458 G T CNTNAP2 Missense_Mutation p.R402M 0.24 deleterious(0) probably_damaging(0.999) TCGA-22-5473-01 7 148312503 148312503 A T C7orf33 3'UTR 0.40 TCGA-22-5473-01 7 150325337 150325337 C A GIMAP6 Missense_Mutation p.V117F 0.23 tolerated(0.06) possibly_damaging(0.48) TCGA-22-5473-01 7 151093209 151093209 C A WDR86 Missense_Mutation p.G127W 0.25 deleterious(0) probably_damaging(0.988) TCGA-22-5473-01 7 151093210 151093210 C A WDR86 Missense_Mutation p.K126N 0.26 tolerated(0.17) benign(0.046) TCGA-22-5473-01 7 151880070 151880070 T A KMT2C Nonsense_Mutation p.K1752* 0.64 TCGA-22-5473-01 7 156476712 156476712 G A LMBR1 3'UTR 0.22 TCGA-22-5473-01 7 158464254 158464254 T G NCAPG2 Silent p.V477V 0.23 TCGA-22-5473-01 7 158672642 158672642 A G WDR60 Missense_Mutation p.K281E 0.33 tolerated(0.14) benign(0.001) TCGA-22-5473-01 7 20698188 20698188 G A ABCB5 Silent p.R532R 0.13 TCGA-22-5473-01 7 21779186 21779186 C T DNAH11 Intron 0.44 TCGA-22-5473-01 7 21882171 21882171 G C DNAH11 Missense_Mutation p.R3574S 0.06 benign(0.087) TCGA-22-5473-01 7 2281800 2281800 G A FTSJ2 Missense_Mutation p.A2V 0.83 deleterious_low_confidence(0.01) benign(0.267) TCGA-22-5473-01 7 26236961 26236961 C G HNRNPA2B1 Missense_Mutation p.E92Q 0.12 deleterious(0.03) possibly_damaging(0.876) TCGA-22-5473-01 7 33135041 33135041 T C RP9 Missense_Mutation p.I157M 0.78 deleterious_low_confidence(0) possibly_damaging(0.844) TCGA-22-5473-01 7 36580015 36580015 G - AOAH Frame_Shift_Del p.H406Tfs*33 0.47 TCGA-22-5473-01 7 47873943 47873943 T C PKD1L1 Silent p.P2056P 0.51 TCGA-22-5473-01 7 48312039 48312039 G A ABCA13 Missense_Mutation p.A926T 0.75 benign(0.01) TCGA-22-5473-01 7 5105001 5105001 C T RBAK Silent p.L638L 0.13 TCGA-22-5473-01 7 55910746 55910746 G T SEPT14 Silent p.S149S 0.39 TCGA-22-5473-01 7 63720644 63720644 G T ZNF679 Nonsense_Mutation p.E29* 0.14 TCGA-22-5473-01 7 64167545 64167545 A T ZNF107 Missense_Mutation p.N288I 0.15 tolerated(0.28) benign(0.004) TCGA-22-5473-01 7 65751683 65751683 A C TPST1 Missense_Mutation p.E344A 0.47 tolerated(0.11) benign(0.007) TCGA-22-5473-01 7 69364300 69364300 G T AUTS2 Missense_Mutation p.R113L 0.16 deleterious(0) benign(0.103) TCGA-22-5473-01 7 72732870 72732870 T A TRIM50 Missense_Mutation p.E226V 0.17 deleterious(0) benign(0.008) TCGA-22-5473-01 7 76139950 76139950 C - UPK3B 5'UTR 0.26 TCGA-22-5473-01 7 76825589 76825589 G A FGL2 3'UTR 0.24 TCGA-22-5473-01 7 81594957 81594957 C T CACNA2D1 Missense_Mutation p.D843N 0.10 deleterious(0) probably_damaging(0.973) TCGA-22-5473-01 7 82430892 82430892 C T PCLO Silent p.Q4983Q 0.25 TCGA-22-5473-01 7 82585951 82585951 C T PCLO Missense_Mutation p.E1440K 0.25 unknown(0) TCGA-22-5473-01 7 87027960 87027960 G C CROT Nonstop_Mutation p.*641Yext*2 0.15 TCGA-22-5473-01 7 87465676 87465676 C G SLC25A40 Missense_Mutation p.G302A 0.15 deleterious(0.02) probably_damaging(0.964) TCGA-22-5473-01 7 92027143 92027143 C T ANKIB1 Silent p.A834A 0.37 TCGA-22-5473-01 7 94038908 94038908 C T COL1A2 Silent p.A308A 0.11 TCGA-22-5473-01 7 94173843 94173843 G T CASD1 Splice_Site p.X492_splice 0.39 TCGA-22-5473-01 7 94539390 94539390 C G PPP1R9A 5'UTR 0.11 TCGA-22-5473-01 7 98519471 98519471 G A TRRAP Silent p.L906L 0.27 TCGA-22-5473-01 7 99221705 99221705 C A ZSCAN25 Missense_Mutation p.A236D 0.40 deleterious(0) benign(0.327) TCGA-22-5473-01 7 99802726 99802726 C A STAG3 Missense_Mutation p.P1017H 0.30 deleterious(0.02) benign(0.227) TCGA-22-5473-01 7 99914722 99914722 C T SPDYE3 Silent p.F430F 0.10 TCGA-22-5473-01 7 99964979 99964979 G T PILRB Missense_Mutation p.R221S 0.14 tolerated(0.11) benign(0.001) TCGA-22-5473-01 8 105456623 105456623 C A DPYS Missense_Mutation p.G216C 0.37 deleterious(0) probably_damaging(1) TCGA-22-5473-01 8 106815657 106815657 C A ZFPM2 Missense_Mutation p.T1116N 0.20 tolerated(0.35) benign(0.001) TCGA-22-5473-01 8 110457611 110457611 C A PKHD1L1 Missense_Mutation p.P1838Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-22-5473-01 8 11189354 11189354 C T SLC35G5 Missense_Mutation p.P247S 0.49 deleterious(0.01) probably_damaging(1) TCGA-22-5473-01 8 113519002 113519002 G C CSMD3 Missense_Mutation p.P1605A 0.17 deleterious(0) probably_damaging(0.969) TCGA-22-5473-01 8 113519003 113519003 G T CSMD3 Missense_Mutation p.F1604L 0.17 deleterious(0) possibly_damaging(0.824) TCGA-22-5473-01 8 113564938 113564938 C A CSMD3 Missense_Mutation p.G1416C 0.40 deleterious(0) probably_damaging(0.997) TCGA-22-5473-01 8 113871398 113871398 G A CSMD3 Silent p.V577V 0.20 TCGA-22-5473-01 8 118159212 118159212 C A SLC30A8 Missense_Mutation p.P31T 0.36 tolerated(0.14) benign(0.005) TCGA-22-5473-01 8 118159213 118159213 C A SLC30A8 Missense_Mutation p.P31Q 0.37 tolerated(0.08) benign(0.245) TCGA-22-5473-01 8 124232363 124232363 C A C8orf76 Nonsense_Mutation p.E375* 0.21 TCGA-22-5473-01 8 124547001 124547001 T C FBXO32 Missense_Mutation p.Y57C 0.53 tolerated(0.22) benign(0.019) TCGA-22-5473-01 8 124748114 124748114 G A ANXA13 Nonsense_Mutation p.Q7* 0.14 TCGA-22-5473-01 8 139190802 139190802 G A FAM135B Silent p.L335L 0.16 TCGA-22-5473-01 8 140630639 140630639 G T KCNK9 Silent p.S329S 0.26 TCGA-22-5473-01 8 141415750 141415750 C T TRAPPC9 Missense_Mutation p.G410R 0.19 tolerated(0.1) probably_damaging(0.996) TCGA-22-5473-01 8 141559241 141559241 G C AGO2 Silent p.V520V 0.18 TCGA-22-5473-01 8 144332175 144332175 T G ZFP41 Silent p.P54P 0.19 TCGA-22-5473-01 8 144413411 144413411 A G TOP1MT Missense_Mutation p.V74A 0.19 deleterious(0.02) probably_damaging(0.966) TCGA-22-5473-01 8 144641548 144641548 G A GSDMD Missense_Mutation p.E15K 0.39 deleterious(0) probably_damaging(0.997) TCGA-22-5473-01 8 146106968 146106968 C A ZNF250 Nonsense_Mutation p.E539* 0.15 TCGA-22-5473-01 8 15615338 15615338 T A TUSC3 3'UTR 0.44 TCGA-22-5473-01 8 15615339 15615339 G T TUSC3 3'UTR 0.46 TCGA-22-5473-01 8 23049437 23049437 C T TNFRSF10A Missense_Mutation p.E393K 0.66 deleterious(0) probably_damaging(0.989) TCGA-22-5473-01 8 3000184 3000184 T A CSMD1 Missense_Mutation p.Q2015L 0.55 possibly_damaging(0.901) TCGA-22-5473-01 8 36703341 36703341 C T KCNU1 Silent p.V605V 0.29 TCGA-22-5473-01 8 38173512 38173512 C T WHSC1L1 Missense_Mutation p.R635H 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-22-5473-01 8 39646253 39646253 G A ADAM2 Missense_Mutation p.H193Y 0.07 tolerated(0.78) benign(0.005) TCGA-22-5473-01 8 41542170 41542171 - A ANK1 Frame_Shift_Ins p.G1518Wfs*67 0.35 TCGA-22-5473-01 8 42232309 42232309 G T DKK4 Missense_Mutation p.P129T 0.15 tolerated(0.09) benign(0.023) TCGA-22-5473-01 8 48885504 48885504 G C MCM4 Missense_Mutation p.Q672H 0.14 tolerated(0.05) benign(0.021) TCGA-22-5473-01 8 54669176 54669176 C G ATP6V1H Missense_Mutation p.V406L 0.44 deleterious(0.01) benign(0.328) TCGA-22-5473-01 8 59510037 59510037 T C NSMAF Silent p.L598L 0.52 TCGA-22-5473-01 8 62415800 62415800 C T ASPH 3'UTR 0.29 TCGA-22-5473-01 8 69030878 69030878 A T PREX2 Silent p.S1140S 0.11 TCGA-22-5473-01 8 72969217 72969217 T A TRPA1 Missense_Mutation p.N377Y 0.15 deleterious(0) possibly_damaging(0.794) TCGA-22-5473-01 8 72970052 72970052 C A TRPA1 Splice_Site p.X332_splice 0.33 TCGA-22-5473-01 8 73993433 73993433 A T SBSPON Missense_Mutation p.V77E 0.29 deleterious(0) probably_damaging(0.994) TCGA-22-5473-01 8 75227697 75227697 C A JPH1 Missense_Mutation p.A180S 0.51 tolerated(0.72) benign(0.201) TCGA-22-5473-01 8 77616803 77616803 C A ZFHX4 Silent p.L160L 0.17 TCGA-22-5473-01 8 77768487 77768487 C A ZFHX4 Silent p.P3110P 0.17 TCGA-22-5473-01 8 77775711 77775711 C A ZFHX4 Missense_Mutation p.P3254Q 0.49 probably_damaging(0.997) TCGA-22-5473-01 8 8239031 8239031 C T SGK223 Missense_Mutation p.S76N 0.36 benign(0.003) TCGA-22-5473-01 8 86354385 86354385 G C CA3 Missense_Mutation p.E106Q 0.14 deleterious(0.02) benign(0.268) TCGA-22-5473-01 8 89180131 89180131 C G MMP16 Missense_Mutation p.W159S 0.15 deleterious(0) probably_damaging(0.987) TCGA-22-5473-01 8 92092907 92092907 G T OTUD6B Missense_Mutation p.Q243H 0.19 tolerated(0.13) benign(0.162) TCGA-22-5473-01 9 107457019 107457019 C G OR13D1 Missense_Mutation p.T106R 0.41 deleterious(0) probably_damaging(0.955) TCGA-22-5473-01 9 109689124 109689124 G T ZNF462 Silent p.L977L 0.09 TCGA-22-5473-01 9 114182345 114182345 G C KIAA0368 Nonsense_Mutation p.S682* 0.22 TCGA-22-5473-01 9 115337146 115337146 G T KIAA1958 Silent p.T262T 0.48 TCGA-22-5473-01 9 116345834 116345834 G C RGS3 Missense_Mutation p.Q714H 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.62) TCGA-22-5473-01 9 119028236 119028236 G T PAPPA Missense_Mutation p.G945W 0.28 deleterious(0) probably_damaging(0.965) TCGA-22-5473-01 9 122075479 122075479 C A BRINP1 Missense_Mutation p.R52M 0.14 tolerated(0.06) benign(0.27) TCGA-22-5473-01 9 125437982 125437982 A T OR1L3 Missense_Mutation p.T192S 0.47 deleterious(0.01) possibly_damaging(0.85) TCGA-22-5473-01 9 125589053 125589053 T C PDCL Missense_Mutation p.D5G 0.21 deleterious(0) probably_damaging(0.998) TCGA-22-5473-01 9 125655289 125655289 G A RC3H2 Missense_Mutation p.S83L 0.23 tolerated(0.06) benign(0.01) TCGA-22-5473-01 9 126794808 126794808 G T LHX2 Missense_Mutation p.G348V 0.19 tolerated(0.09) probably_damaging(0.999) TCGA-22-5473-01 9 127912174 127912174 G A PPP6C Silent p.L269L 0.27 TCGA-22-5473-01 9 128117939 128117939 C T GAPVD1 Silent p.T1285T 0.21 TCGA-22-5473-01 9 131597858 131597858 C T CCBL1 Missense_Mutation p.R315H 0.25 tolerated(0.2) benign(0.004) TCGA-22-5473-01 9 135161823 135161823 G C SETX Missense_Mutation p.S2128C 0.10 deleterious(0) probably_damaging(0.999) TCGA-22-5473-01 9 135202559 135202559 C T SETX Missense_Mutation p.E1476K 0.22 tolerated(0.13) benign(0.027) TCGA-22-5473-01 9 135554533 135554533 G C GTF3C4 Missense_Mutation p.Q509H 0.17 tolerated(0.07) benign(0.002) TCGA-22-5473-01 9 136577802 136577802 C G SARDH Missense_Mutation p.E423Q 0.17 tolerated(0.65) benign(0.189) TCGA-22-5473-01 9 139100962 139100962 G A QSOX2 Missense_Mutation p.T570M 0.15 tolerated(0.09) benign(0.015) TCGA-22-5473-01 9 139616741 139616741 C T FAM69B Silent p.L157L 0.09 TCGA-22-5473-01 9 139717980 139717980 A T RABL6 Missense_Mutation p.K45M 0.15 deleterious(0) probably_damaging(0.998) TCGA-22-5473-01 9 139733427 139733427 C T RABL6 Silent p.D450D 0.17 TCGA-22-5473-01 9 140361888 140361888 C T PNPLA7 Missense_Mutation p.E974K 0.17 deleterious(0) probably_damaging(0.933) TCGA-22-5473-01 9 14801851 14801851 C G FREM1 Missense_Mutation p.E1165Q 0.13 tolerated(0.12) benign(0.081) TCGA-22-5473-01 9 15177792 15177792 C A TTC39B Missense_Mutation p.D582Y 0.86 deleterious(0) probably_damaging(0.987) TCGA-22-5473-01 9 32632175 32632175 G C TAF1L Missense_Mutation p.Q1135E 0.19 tolerated(0.14) benign(0.015) TCGA-22-5473-01 9 33462594 33462594 C T NOL6 3'UTR 0.66 TCGA-22-5473-01 9 33675496 33675496 G C PTENP1 RNA 0.58 TCGA-22-5473-01 9 5720617 5720617 G A KIAA1432 Missense_Mutation p.G196D 0.83 tolerated(0.12) probably_damaging(0.991) TCGA-22-5473-01 9 73478022 73478022 G A TRPM3 Silent p.C88C 0.25 TCGA-22-5473-01 9 74810478 74810478 G C GDA Silent p.P62P 0.24 TCGA-22-5473-01 9 77567353 77567353 C T C9orf40 Missense_Mutation p.D59N 0.18 deleterious(0.02) probably_damaging(0.913) TCGA-22-5473-01 9 79319808 79319808 C G PRUNE2 Missense_Mutation p.R2461P 0.17 tolerated(0.08) benign(0.015) TCGA-22-5473-01 9 79465456 79465456 C A PRUNE2 Silent p.R89R 0.20 TCGA-22-5473-01 9 84606478 84606478 G T SPATA31D1 Missense_Mutation p.D365Y 0.25 deleterious(0.01) possibly_damaging(0.739) TCGA-22-5473-01 9 84607883 84607883 G C SPATA31D1 Missense_Mutation p.R833P 0.17 deleterious(0) benign(0.013) TCGA-22-5473-01 9 90499964 90499964 A T SPATA31E1 Missense_Mutation p.S188C 0.19 tolerated(0.05) possibly_damaging(0.892) TCGA-22-5473-01 9 91262462 91262462 C G RP13-60M5.2 RNA 0.17 TCGA-22-5473-01 9 96082687 96082687 G T WNK2 3'Flank 0.27 TCGA-22-5473-01 X 10047794 10047794 G T WWC3 Missense_Mutation p.Q109H 0.52 tolerated(0.24) benign(0.162) TCGA-22-5473-01 X 102471255 102471255 T C BEX4 Silent p.L58L 0.68 TCGA-22-5473-01 X 105189947 105189947 A T NRK Silent p.A1382A 0.47 TCGA-22-5473-01 X 110490677 110490677 G T CAPN6 Silent p.V554V 0.55 TCGA-22-5473-01 X 118986805 118986805 G C UPF3B Silent p.T29T 0.33 TCGA-22-5473-01 X 119394785 119394785 C A TMEM255A Silent p.P330P 0.34 TCGA-22-5473-01 X 123196827 123196827 C T STAG2 Missense_Mutation p.P572S 0.75 deleterious(0) probably_damaging(1) TCGA-22-5473-01 X 128657245 128657245 G C SMARCA1 Missense_Mutation p.Q35E 0.33 tolerated(1) benign(0) TCGA-22-5473-01 X 152159171 152159171 G C PNMA5 Silent p.L324L 0.73 TCGA-22-5473-01 X 153072813 153072813 C A PDZD4 Missense_Mutation p.S103I 0.75 tolerated(0.05) benign(0.105) TCGA-22-5473-01 X 18213564 18213564 T A BEND2 Splice_Site p.X345_splice 0.50 TCGA-22-5473-01 X 18230740 18230740 C G BEND2 Missense_Mutation p.S146T 0.42 tolerated(0.08) benign(0.34) TCGA-22-5473-01 X 22186486 22186486 G A PHEX Missense_Mutation p.V488I 0.42 tolerated(0.19) benign(0) TCGA-22-5473-01 X 23723173 23723173 T C ACOT9 Silent p.A348A 0.57 TCGA-22-5473-01 X 2406656 2406656 T A ZBED1 3'UTR 0.24 TCGA-22-5473-01 X 24721417 24721417 C T POLA1 Missense_Mutation p.S67L 0.53 deleterious(0) probably_damaging(0.99) TCGA-22-5473-01 X 26157751 26157751 G T MAGEB18 Nonsense_Mutation p.E217* 0.62 TCGA-22-5473-01 X 30326502 30326502 C A NR0B1 Nonsense_Mutation p.E327* 0.39 TCGA-22-5473-01 X 31089771 31089771 G T FTHL17 Silent p.A100A 0.39 TCGA-22-5473-01 X 34148342 34148342 G C FAM47A Missense_Mutation p.S685C 0.41 tolerated(0.1) probably_damaging(0.923) TCGA-22-5473-01 X 48755053 48755053 C T TIMM17B 5'UTR 0.52 TCGA-22-5473-01 X 53117071 53117071 C T TSPYL2 Nonsense_Mutation p.Q678* 0.55 TCGA-22-5473-01 X 67940891 67940891 G A STARD8 Silent p.K725K 0.62 TCGA-22-5473-01 X 69495998 69495998 T A ARR3 Missense_Mutation p.F71Y 0.50 deleterious(0.03) benign(0.424) TCGA-22-5473-01 X 75004088 75004088 G C MAGEE2 Missense_Mutation p.L267V 0.56 deleterious(0) probably_damaging(0.978) TCGA-22-5473-01 X 79975093 79975093 G C BRWD3 Missense_Mutation p.L647V 0.13 deleterious(0.03) probably_damaging(0.984) TCGA-22-5473-01 X 85158697 85158697 G A CHM Intron 0.09 TCGA-22-5473-01 Y 2843674 2843674 C T ZFY Nonsense_Mutation p.Q303* 0.32 TCGA-22-5473-01 Y 4966757 4966757 G T PCDH11Y Missense_Mutation p.V380F 0.80 tolerated(0.05) possibly_damaging(0.878) TCGA-22-5473-01 Y 4967431 4967431 C A PCDH11Y Missense_Mutation p.H604Q 0.74 tolerated(0.58) possibly_damaging(0.646) TCGA-22-5473-01 Y 6115402 6115402 A G TSPY2 Silent p.A164A 0.22 TCGA-22-5474-01 10 22607579 22607579 C T COMMD3 Intron 0.24 TCGA-22-5474-01 10 61432635 61432635 G T SLC16A9 Missense_Mutation p.A78E 0.35 deleterious(0.02) probably_damaging(0.982) TCGA-22-5474-01 10 88703038 88703038 C A MMRN2 Silent p.L501L 0.21 TCGA-22-5474-01 11 105880459 105880459 C T MSANTD4 Missense_Mutation p.G281S 0.24 tolerated(0.7) benign(0.002) TCGA-22-5474-01 11 10794075 10794075 C T CTR9 Missense_Mutation p.S818F 0.31 tolerated(0.05) possibly_damaging(0.737) TCGA-22-5474-01 11 108382977 108382977 G A EXPH5 Missense_Mutation p.S1086L 0.25 tolerated(0.07) probably_damaging(0.998) TCGA-22-5474-01 11 122930469 122930469 T G HSPA8 Missense_Mutation p.T278P 0.07 deleterious_low_confidence(0.03) possibly_damaging(0.878) TCGA-22-5474-01 11 125864259 125864259 G A CDON Missense_Mutation p.T857I 0.18 deleterious(0) probably_damaging(1) TCGA-22-5474-01 11 55371600 55371600 G A OR4C11 Missense_Mutation p.L84F 0.50 deleterious(0.03) benign(0.03) TCGA-22-5474-01 11 55761723 55761723 A G OR5F1 Missense_Mutation p.C127R 0.17 deleterious(0) probably_damaging(0.999) TCGA-22-5474-01 11 57564320 57564321 - T CTNND1 Frame_Shift_Ins p.L272Sfs*14 0.21 TCGA-22-5474-01 11 57576856 57576856 G C CTNND1 Missense_Mutation p.V785L 0.32 deleterious(0.02) benign(0.138) TCGA-22-5474-01 11 5969026 5969026 G A OR56A3 Missense_Mutation p.M150I 0.08 tolerated(0.72) benign(0.001) TCGA-22-5474-01 11 75727967 75727967 G T UVRAG Missense_Mutation p.G390V 0.20 deleterious(0) probably_damaging(0.997) TCGA-22-5474-01 12 10149796 10149796 T - CLEC1B Frame_Shift_Del p.Q82Hfs*4 0.20 TCGA-22-5474-01 12 117768176 117768176 C T NOS1 Missense_Mutation p.M233I 0.15 tolerated_low_confidence(0.17) benign(0) TCGA-22-5474-01 12 119916931 119916931 G A CCDC60 Missense_Mutation p.G125E 0.27 tolerated(0.28) benign(0.009) TCGA-22-5474-01 12 129558387 129558387 G T TMEM132D 3'UTR 0.16 TCGA-22-5474-01 12 14578137 14578137 A G ATF7IP Missense_Mutation p.M430V 0.25 deleterious_low_confidence(0) benign(0.043) TCGA-22-5474-01 12 23696276 23696276 C T SOX5 Missense_Mutation p.R547Q 0.28 deleterious(0) probably_damaging(0.992) TCGA-22-5474-01 12 42840437 42840437 A T PPHLN1 3'UTR 0.38 TCGA-22-5474-01 12 50571710 50571710 C G LIMA1 Missense_Mutation p.E474Q 0.05 deleterious(0) benign(0.211) TCGA-22-5474-01 12 52885385 52885385 C T KRT6A Missense_Mutation p.D226N 0.23 tolerated(0.12) possibly_damaging(0.652) TCGA-22-5474-01 12 53201458 53201458 T C KRT4 Missense_Mutation p.Y439C 0.18 deleterious(0) probably_damaging(0.999) TCGA-22-5474-01 12 5722118 5722118 C A ANO2 Silent p.V645V 0.20 TCGA-22-5474-01 12 57588840 57588840 G A LRP1 Missense_Mutation p.G2755D 0.30 probably_damaging(1) TCGA-22-5474-01 12 62785097 62785098 - A USP15 Frame_Shift_Ins p.R710Tfs*14 0.22 TCGA-22-5474-01 12 9002262 9002262 C G A2ML1 Intron 0.15 TCGA-22-5474-01 13 21965981 21965981 C T ZDHHC20 Missense_Mutation p.D203N 0.19 tolerated(0.37) benign(0.011) TCGA-22-5474-01 15 22369131 22369131 C A OR4M2 Silent p.R186R 0.21 TCGA-22-5474-01 15 41862508 41862508 C A TYRO3 Silent p.R485R 0.18 TCGA-22-5474-01 15 45814460 45814460 G A SLC30A4 Silent p.F31F 0.06 TCGA-22-5474-01 15 49429425 49429425 C T COPS2 Splice_Site p.X162_splice 0.19 TCGA-22-5474-01 15 68661578 68661578 G A ITGA11 Missense_Mutation p.T70M 0.31 deleterious(0.04) probably_damaging(0.999) TCGA-22-5474-01 15 84652054 84652054 A G ADAMTSL3 Missense_Mutation p.Y1225C 0.26 deleterious(0.01) probably_damaging(0.98) TCGA-22-5474-01 16 2000847 2000847 G A RPL3L Nonsense_Mutation p.Q167* 0.46 TCGA-22-5474-01 16 89351186 89351186 C T ANKRD11 Silent p.S588S 0.16 TCGA-22-5474-01 17 10359842 10359842 T - MYH4 Frame_Shift_Del p.K643Rfs*17 0.35 TCGA-22-5474-01 17 37564166 37564166 G C MED1 Missense_Mutation p.I1436M 0.22 deleterious_low_confidence(0.01) unknown(0) TCGA-22-5474-01 17 37564269 37564269 G C MED1 Missense_Mutation p.P1402R 0.33 deleterious_low_confidence(0) unknown(0) TCGA-22-5474-01 17 37564891 37564891 G A MED1 Missense_Mutation p.H1195Y 0.17 deleterious_low_confidence(0) unknown(0) TCGA-22-5474-01 17 54969227 54969227 C G TRIM25 Missense_Mutation p.R576P 0.45 deleterious(0) probably_damaging(0.995) TCGA-22-5474-01 17 56247784 56247784 C T OR4D2 Silent p.Y256Y 0.50 TCGA-22-5474-01 17 67039850 67039850 T C ABCA9 Missense_Mutation p.T194A 0.52 tolerated(0.16) benign(0.311) TCGA-22-5474-01 17 74527629 74527629 C A CYGB Silent p.L96L 0.23 TCGA-22-5474-01 17 7577580 7577580 T G TP53 Missense_Mutation p.Y234S 0.61 deleterious(0.01) probably_damaging(0.938) TCGA-22-5474-01 19 20027425 20027425 T G ZNF93 Missense_Mutation p.L63V 0.04 deleterious(0.02) benign(0.101) TCGA-22-5474-01 19 37904954 37904954 G A ZNF569 Silent p.I202I 0.30 TCGA-22-5474-01 19 38948934 38948934 T C RYR1 Splice_Site p.X723_splice 0.41 TCGA-22-5474-01 19 44536873 44536873 G T ZNF222 Missense_Mutation p.G389V 0.16 deleterious(0) probably_damaging(0.927) TCGA-22-5474-01 19 52705205 52705205 C T PPP2R1A Silent p.L29L 0.17 TCGA-22-5474-01 1 145282031 145282031 G C NOTCH2NL Nonstop_Mutation p.*237Yext*17 0.08 TCGA-22-5474-01 1 151779882 151779882 G A RORC 3'UTR 0.28 TCGA-22-5474-01 1 153735786 153735786 G C INTS3 Missense_Mutation p.D572H 0.45 deleterious(0.04) benign(0.003) TCGA-22-5474-01 1 160136391 160136391 C T ATP1A4 Missense_Mutation p.T374M 0.25 deleterious(0) probably_damaging(1) TCGA-22-5474-01 1 164781371 164781371 A G PBX1 Missense_Mutation p.T328A 0.10 tolerated(0.1) benign(0.02) TCGA-22-5474-01 1 244218145 244218145 G T ZBTB18 Nonsense_Mutation p.E357* 0.49 TCGA-22-5474-01 1 27878009 27878009 G A AHDC1 Silent p.D206D 0.21 TCGA-22-5474-01 1 45232580 45232580 C G KIF2C Missense_Mutation p.S685C 0.33 tolerated(0.22) benign(0.001) TCGA-22-5474-01 1 45232776 45232776 C G KIF2C Missense_Mutation p.I701M 0.35 tolerated(0.09) benign(0.05) TCGA-22-5474-01 20 26084076 26084076 T C NCOR1P1 RNA 0.18 TCGA-22-5474-01 20 9317805 9317805 C T PLCB4 Silent p.F39F 0.22 TCGA-22-5474-01 22 32097716 32097716 T C PRR14L Silent p.S2011S 0.21 TCGA-22-5474-01 2 105990063 105990063 T C FHL2 Missense_Mutation p.N95S 0.18 tolerated(0.31) benign(0.009) TCGA-22-5474-01 2 131520797 131520797 C T AMER3 Silent p.D384D 0.25 TCGA-22-5474-01 2 178098810 178098810 C G NFE2L2 Missense_Mutation p.E79Q 0.26 deleterious(0) probably_damaging(1) TCGA-22-5474-01 2 178402887 178402887 C T AGPS Silent p.D647D 0.04 TCGA-22-5474-01 2 208611876 208611876 G A CCNYL1 Missense_Mutation p.D198N 0.22 tolerated(0.13) possibly_damaging(0.791) TCGA-22-5474-01 2 220103867 220103867 C G GLB1L Missense_Mutation p.E337Q 0.25 deleterious(0) probably_damaging(1) TCGA-22-5474-01 2 27303628 27303628 C T EMILIN1 Missense_Mutation p.R107C 0.31 probably_damaging(0.987) TCGA-22-5474-01 2 3392130 3392130 G A TRAPPC12 Missense_Mutation p.A246T 0.36 tolerated_low_confidence(0.4) benign(0.15) TCGA-22-5474-01 2 49381444 49381444 G C FSHR Missense_Mutation p.T38R 0.31 tolerated(0.34) benign(0.027) TCGA-22-5474-01 2 54014505 54014505 C G ERLEC1 Missense_Mutation p.S53C 0.27 deleterious(0.01) possibly_damaging(0.571) TCGA-22-5474-01 2 70933547 70933547 G T ADD2 5'UTR 0.39 TCGA-22-5474-01 2 74757203 74757203 C T HTRA2 Missense_Mutation p.R24C 0.32 tolerated_low_confidence(0.16) benign(0.001) TCGA-22-5474-01 2 88427470 88427470 C T FABP1 Missense_Mutation p.G23S 0.29 deleterious(0) probably_damaging(0.977) TCGA-22-5474-01 3 13417073 13417073 G A NUP210 Silent p.I454I 0.17 TCGA-22-5474-01 3 167322220 167322220 C A WDR49 5'UTR 0.58 TCGA-22-5474-01 3 33617711 33617711 G A CLASP2 Nonsense_Mutation p.R803* 0.09 TCGA-22-5474-01 3 38888776 38888776 A - SCN11A Frame_Shift_Del p.V1596Sfs*7 0.28 TCGA-22-5474-01 4 123178555 123178555 T A KIAA1109 Missense_Mutation p.M2175K 0.24 benign(0.004) TCGA-22-5474-01 4 167022040 167022040 C T TLL1 3'UTR 0.21 TCGA-22-5474-01 4 73013431 73013431 C G NPFFR2 Missense_Mutation p.H491D 0.33 tolerated_low_confidence(0.22) benign(0.041) TCGA-22-5474-01 4 73943167 73943167 G C ANKRD17 Missense_Mutation p.Q2498E 0.35 benign(0.001) TCGA-22-5474-01 4 94145893 94145893 G T GRID2 Missense_Mutation p.Q364H 0.32 tolerated(0.15) benign(0.105) TCGA-22-5474-01 5 13841159 13841159 G C DNAH5 Missense_Mutation p.I1855M 0.16 benign(0.308) TCGA-22-5474-01 5 13920702 13920702 G A DNAH5 Missense_Mutation p.L229F 0.14 benign(0) TCGA-22-5474-01 5 140221900 140221900 G C PCDHA8 Missense_Mutation p.G332R 0.31 deleterious_low_confidence(0) possibly_damaging(0.898) TCGA-22-5474-01 5 35740042 35740042 C T SPEF2 Missense_Mutation p.P1029S 0.15 tolerated(0.11) benign(0.03) TCGA-22-5474-01 5 60189024 60189024 C G ERCC8 Intron 0.36 TCGA-22-5474-01 6 30856735 30856735 G A DDR1 Missense_Mutation p.D46N 0.30 deleterious(0.01) probably_damaging(0.962) TCGA-22-5474-01 6 4130954 4130957 TTCT - C6orf201 3'UTR 0.54 TCGA-22-5474-01 6 42016369 42016369 C T TAF8 5'Flank 0.25 TCGA-22-5474-01 7 102257163 102257163 A T RASA4 5'UTR 0.10 TCGA-22-5474-01 7 117254679 117254679 G C CFTR Missense_Mutation p.G1127A 0.21 deleterious(0.02) possibly_damaging(0.596) TCGA-22-5474-01 7 117307086 117307086 G T CFTR Missense_Mutation p.S1456I 0.21 deleterious_low_confidence(0) benign(0.128) TCGA-22-5474-01 7 143091367 143091367 C T EPHA1 Missense_Mutation p.D808N 0.21 deleterious(0) probably_damaging(1) TCGA-22-5474-01 7 41739883 41739883 G T INHBA Missense_Mutation p.S30R 0.22 tolerated(0.14) possibly_damaging(0.605) TCGA-22-5474-01 7 44714139 44714139 C A OGDH Silent p.I306I 0.17 TCGA-22-5474-01 7 47319763 47319763 T C TNS3 Missense_Mutation p.K1398E 0.35 deleterious(0) possibly_damaging(0.776) TCGA-22-5474-01 7 71571274 71571274 G A CALN1 Nonsense_Mutation p.R84* 0.34 TCGA-22-5474-01 7 82764926 82764926 C A PCLO Missense_Mutation p.G647V 0.31 unknown(0) TCGA-22-5474-01 8 125463096 125463096 C T TRMT12 5'UTR 0.20 TCGA-22-5474-01 8 131916111 131916111 C T ADCY8 Silent p.V606V 0.25 TCGA-22-5474-01 8 42176881 42176881 C G IKBKB Missense_Mutation p.F486L 0.28 deleterious(0) probably_damaging(0.997) TCGA-22-5474-01 8 71075035 71075035 C T NCOA2 Nonsense_Mutation p.W296* 0.29 TCGA-22-5474-01 8 80942390 80942390 C A MRPS28 Nonsense_Mutation p.E32* 0.30 TCGA-22-5474-01 9 120475644 120475644 C G TLR4 Missense_Mutation p.T413S 0.08 tolerated(1) benign(0.014) TCGA-22-5474-01 9 124922027 124922027 C T NDUFA8 5'UTR 0.16 TCGA-22-5474-01 9 135211885 135211885 G C SETX Missense_Mutation p.I172M 0.13 deleterious(0) probably_damaging(0.999) TCGA-22-5474-01 9 21227905 21227905 G C IFNA17 Missense_Mutation p.L90V 0.28 deleterious(0.01) probably_damaging(0.974) TCGA-22-5474-01 9 27296647 27296647 C G EQTN Missense_Mutation p.E56Q 0.10 deleterious(0.01) possibly_damaging(0.608) TCGA-22-5474-01 9 34290194 34290194 C A KIF24 Missense_Mutation p.D369Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-22-5474-01 9 35675547 35675547 G A CA9 Missense_Mutation p.S139N 0.67 tolerated(0.06) benign(0.003) TCGA-22-5474-01 X 50037927 50037927 C A CCNB3 Missense_Mutation p.S90Y 0.64 tolerated(0.09) benign(0.36) TCGA-22-5477-01 10 108448054 108448054 C A SORCS1 Missense_Mutation p.D486Y 0.79 deleterious(0) probably_damaging(0.967) TCGA-22-5477-01 10 11504812 11504812 A T USP6NL Silent p.T722T 0.53 TCGA-22-5477-01 10 1405757 1405757 C A ADARB2 Silent p.A181A 0.87 TCGA-22-5477-01 10 27040691 27040691 G A ABI1 Missense_Mutation p.P396L 0.44 tolerated(0.12) benign(0.087) TCGA-22-5477-01 10 38403713 38403713 G T ZNF37A Missense_Mutation p.G16C 0.50 deleterious(0.02) probably_damaging(0.999) TCGA-22-5477-01 10 43088334 43088334 C G ZNF33B Silent p.T688T 0.20 TCGA-22-5477-01 10 61011214 61011214 C G FAM13C Intron 0.41 TCGA-22-5477-01 10 6157554 6157554 T C RBM17 3'UTR 0.84 TCGA-22-5477-01 10 98823308 98823308 G C SLIT1 Missense_Mutation p.R233G 0.92 tolerated(0.13) probably_damaging(0.998) TCGA-22-5477-01 11 10546918 10546918 A C RNF141 Missense_Mutation p.I85M 0.17 deleterious(0) possibly_damaging(0.549) TCGA-22-5477-01 11 45891638 45891638 G T CRY2 Missense_Mutation p.S431I 0.06 deleterious(0) probably_damaging(0.996) TCGA-22-5477-01 11 55418397 55418397 C A OR4S2 Missense_Mutation p.N6K 0.17 deleterious(0) possibly_damaging(0.762) TCGA-22-5477-01 11 55761490 55761490 A T OR5F1 Silent p.G204G 0.44 TCGA-22-5477-01 11 62294836 62294836 G T AHNAK Silent p.P2351P 0.28 TCGA-22-5477-01 11 62623777 62623777 C T SLC3A2 Silent p.V12V 0.19 TCGA-22-5477-01 11 63233629 63233629 C T HRASLS5 Missense_Mutation p.E234K 0.52 deleterious(0.02) benign(0.127) TCGA-22-5477-01 11 65167257 65167257 A G FRMD8 Missense_Mutation p.H285R 0.30 tolerated(0.15) benign(0.018) TCGA-22-5477-01 11 66130871 66130871 C G RP11-867G23.8 Silent p.V40V 0.44 TCGA-22-5477-01 11 904721 904721 C A CHID1 Missense_Mutation p.K32N 0.79 deleterious_low_confidence(0) possibly_damaging(0.733) TCGA-22-5477-01 12 104156178 104156178 G A STAB2 Missense_Mutation p.E2496K 0.28 tolerated(1) benign(0.011) TCGA-22-5477-01 12 10569292 10569292 T A KLRC3 Silent p.T187T 0.26 TCGA-22-5477-01 12 106461045 106461045 C A NUAK1 Silent p.P507P 0.64 TCGA-22-5477-01 12 109949053 109949053 G A UBE3B Missense_Mutation p.R634K 0.31 tolerated(1) benign(0.001) TCGA-22-5477-01 12 11992157 11992157 G A ETV6 Missense_Mutation p.D83N 0.55 tolerated(0.19) possibly_damaging(0.456) TCGA-22-5477-01 12 123741366 123741366 C G C12orf65 Missense_Mutation p.Q97E 0.47 tolerated(0.16) benign(0.326) TCGA-22-5477-01 12 126128684 126128684 G C TMEM132B Silent p.T495T 0.34 TCGA-22-5477-01 12 14927810 14927810 C G H2AFJ 3'UTR 0.38 TCGA-22-5477-01 12 20807117 20807117 C A PDE3A Silent p.T1054T 0.05 TCGA-22-5477-01 12 302493 302493 A G SLC6A12 Missense_Mutation p.W494R 0.65 tolerated(0.35) probably_damaging(0.973) TCGA-22-5477-01 12 344277 344277 G C SLC6A13 Silent p.L270L 0.09 TCGA-22-5477-01 12 40728879 40728879 T C LRRK2 Silent p.D1956D 0.10 TCGA-22-5477-01 12 42858569 42858569 C G PRICKLE1 Missense_Mutation p.G423R 0.19 deleterious(0) probably_damaging(1) TCGA-22-5477-01 12 49434376 49434376 C A KMT2D Nonsense_Mutation p.E2393* 0.76 TCGA-22-5477-01 12 57600359 57600359 G C LRP1 Missense_Mutation p.E3898D 0.13 benign(0.164) TCGA-22-5477-01 12 72179529 72179529 C T RAB21 3'UTR 0.21 TCGA-22-5477-01 12 8374448 8374448 G C FAM90A1 Silent p.S455S 0.05 TCGA-22-5477-01 12 85695041 85695041 C G ALX1 Missense_Mutation p.R257G 0.47 tolerated(0.74) possibly_damaging(0.874) TCGA-22-5477-01 12 8994045 8994045 C T A2ML1 Silent p.F387F 0.61 TCGA-22-5477-01 13 25466857 25466857 C G CENPJ Missense_Mutation p.R1047T 0.35 deleterious(0) probably_damaging(0.917) TCGA-22-5477-01 13 25466876 25466876 C G CENPJ Missense_Mutation p.E1041Q 0.39 deleterious(0) possibly_damaging(0.841) TCGA-22-5477-01 13 41704624 41704624 C T KBTBD6 Silent p.%3D 0.32 TCGA-22-5477-01 13 52854817 52854817 C T RP11-248G5.8 RNA 0.15 TCGA-22-5477-01 13 53422512 53422512 G T PCDH8 Silent p.L20L 0.37 TCGA-22-5477-01 13 61084796 61084796 G C TDRD3 Missense_Mutation p.E350Q 0.43 tolerated(0.06) probably_damaging(0.919) TCGA-22-5477-01 14 56096779 56096779 T C KTN1 Silent p.H395H 0.38 TCGA-22-5477-01 15 31862290 31862290 C G OTUD7A Missense_Mutation p.E88Q 0.65 tolerated(0.06) benign(0.017) TCGA-22-5477-01 15 59224582 59224582 G C SLTM Missense_Mutation p.P75A 0.40 tolerated(0.09) unknown(0) TCGA-22-5477-01 15 62261510 62261510 G A VPS13C Missense_Mutation p.H967Y 0.50 tolerated(1) benign(0.001) TCGA-22-5477-01 15 74751086 74751086 T A UBL7 Silent p.S41S 0.32 TCGA-22-5477-01 16 15198516 15198516 G T RP11-1186N24.5 3'Flank 0.38 TCGA-22-5477-01 16 18549903 18549903 C A NOMO2 Missense_Mutation p.V389F 0.36 tolerated(0.28) benign(0.032) TCGA-22-5477-01 16 18549904 18549904 C A NOMO2 Silent p.T388T 0.36 TCGA-22-5477-01 16 20807807 20807807 G A ACSM3 Missense_Mutation p.R557K 0.33 deleterious(0.02) probably_damaging(0.99) TCGA-22-5477-01 16 2282359 2282359 C G E4F1 Missense_Mutation p.F201L 0.20 deleterious(0) probably_damaging(0.995) TCGA-22-5477-01 16 2577777 2577777 T C AMDHD2 Missense_Mutation p.L140P 0.38 tolerated(0.2) probably_damaging(0.935) TCGA-22-5477-01 16 2577778 2577778 G T AMDHD2 Silent p.L140L 0.44 TCGA-22-5477-01 16 30777492 30777492 G A RNF40 Missense_Mutation p.M334I 0.36 deleterious(0.03) benign(0.07) TCGA-22-5477-01 16 312511 312511 G A ITFG3 Silent p.E310E 0.24 TCGA-22-5477-01 16 5143501 5143501 G A FAM86A Missense_Mutation p.S75L 0.13 tolerated(0.06) benign(0.02) TCGA-22-5477-01 16 5143509 5143509 G T FAM86A Nonsense_Mutation p.C72* 0.19 TCGA-22-5477-01 16 56377672 56377672 C T GNAO1 Intron 0.33 TCGA-22-5477-01 16 56548503 56548503 G C BBS2 Silent p.L69L 0.26 TCGA-22-5477-01 16 81078461 81078461 G A ATMIN Silent p.Q786Q 0.33 TCGA-22-5477-01 16 85699825 85699825 C T GSE1 Missense_Mutation p.P1001L 0.33 deleterious(0.04) possibly_damaging(0.642) TCGA-22-5477-01 16 89348930 89348930 G C ANKRD11 Silent p.L1340L 0.13 TCGA-22-5477-01 16 89813023 89813023 G A FANCA Missense_Mutation p.T1161M 0.50 deleterious(0.01) benign(0) TCGA-22-5477-01 17 10357999 10357999 T A MYH4 Missense_Mutation p.N855I 0.08 deleterious(0.04) possibly_damaging(0.466) TCGA-22-5477-01 17 1582619 1582619 G C PRPF8 Missense_Mutation p.L459V 0.43 tolerated(0.06) probably_damaging(0.995) TCGA-22-5477-01 17 26861727 26861727 G A FOXN1 Missense_Mutation p.E380K 0.20 deleterious(0) possibly_damaging(0.771) TCGA-22-5477-01 17 33749256 33749256 G A SLFN12 Silent p.I264I 0.22 TCGA-22-5477-01 17 37187671 37187671 G A CTD-2206N4.2 5'Flank 0.43 TCGA-22-5477-01 17 37627431 37627431 G C CDK12 Missense_Mutation p.R449T 0.29 benign(0.05) TCGA-22-5477-01 17 37627496 37627496 G C CDK12 Missense_Mutation p.E471Q 0.27 possibly_damaging(0.775) TCGA-22-5477-01 17 37884326 37884326 G A ERBB2 3'UTR 0.46 TCGA-22-5477-01 17 48456522 48456522 G A EME1 Silent p.K402K 0.41 TCGA-22-5477-01 17 48674006 48674006 C T CACNA1G Silent p.A1021A 0.41 TCGA-22-5477-01 17 526854 526854 A C VPS53 Silent p.L345L 0.09 TCGA-22-5477-01 17 59668329 59668329 C G NACA2 Silent p.R71R 0.37 TCGA-22-5477-01 17 61781440 61781440 C T STRADA Intron 0.43 TCGA-22-5477-01 17 64876810 64876810 C A CACNG5 Silent p.L140L 0.33 TCGA-22-5477-01 17 67160274 67160274 C A ABCA10 Missense_Mutation p.D1102Y 0.10 tolerated(0.2) benign(0.006) TCGA-22-5477-01 17 73934312 73934312 C T FBF1 Intron 0.47 TCGA-22-5477-01 17 7578461 7578461 C A TP53 Missense_Mutation p.V157F 0.74 deleterious(0) probably_damaging(0.997) TCGA-22-5477-01 17 904461 904461 C T TIMM22 3'UTR 0.73 TCGA-22-5477-01 18 23759082 23759082 T C PSMA8 Silent p.N222N 0.84 TCGA-22-5477-01 18 28914040 28914040 G C DSG1 Missense_Mutation p.D294H 0.10 deleterious(0) probably_damaging(1) TCGA-22-5477-01 18 3116506 3116506 C T MYOM1 Silent p.P1042P 0.25 TCGA-22-5477-01 18 67684885 67684885 G C RTTN Missense_Mutation p.S2060C 0.79 deleterious(0.02) possibly_damaging(0.81) TCGA-22-5477-01 18 76936877 76936877 G C ATP9B Silent p.V281V 0.83 TCGA-22-5477-01 18 77170999 77170999 C T NFATC1 Missense_Mutation p.P229S 0.21 deleterious(0) probably_damaging(1) TCGA-22-5477-01 19 11238705 11238705 G A LDLR Missense_Mutation p.R778K 0.43 tolerated(0.48) benign(0.003) TCGA-22-5477-01 19 1271175 1271175 G T CIRBP Missense_Mutation p.R47L 0.36 deleterious(0.01) possibly_damaging(0.758) TCGA-22-5477-01 19 15852340 15852340 C T OR10H3 Silent p.I46I 0.40 TCGA-22-5477-01 19 18965427 18965427 G A UPF1 Missense_Mutation p.A392T 0.41 tolerated(0.69) benign(0.007) TCGA-22-5477-01 19 2917970 2917970 G C ZNF57 Missense_Mutation p.E451Q 0.35 tolerated(0.07) probably_damaging(0.921) TCGA-22-5477-01 19 33200258 33200258 C G NUDT19 Missense_Mutation p.I294M 0.23 deleterious(0) possibly_damaging(0.896) TCGA-22-5477-01 19 34263812 34263812 C G CHST8 Missense_Mutation p.F373L 0.61 deleterious(0) possibly_damaging(0.809) TCGA-22-5477-01 19 4499548 4499548 C T HDGFRP2 Missense_Mutation p.L546F 0.50 tolerated(0.18) unknown(0) TCGA-22-5477-01 19 51013560 51013560 G A JOSD2 Silent p.A43A 0.47 TCGA-22-5477-01 19 52034597 52034597 C G SIGLEC6 Missense_Mutation p.D82H 0.33 tolerated(0.22) benign(0.017) TCGA-22-5477-01 19 52448967 52448967 G A ZNF613 Missense_Mutation p.D611N 0.39 tolerated(0.25) benign(0.004) TCGA-22-5477-01 19 54377415 54377415 C T MYADM Missense_Mutation p.A211V 0.22 tolerated(0.1) benign(0.239) TCGA-22-5477-01 19 57988763 57988763 C G ZNF772 5'UTR 0.38 TCGA-22-5477-01 19 58489707 58489707 G A ZNF606 Nonsense_Mutation p.Q781* 0.43 TCGA-22-5477-01 19 9067241 9067241 G A MUC16 Silent p.I6735I 0.45 TCGA-22-5477-01 1 101339555 101339555 G A EXTL2 Silent p.S312S 0.71 TCGA-22-5477-01 1 117663389 117663389 C G TRIM45 Missense_Mutation p.K145N 0.70 tolerated(0.08) benign(0.035) TCGA-22-5477-01 1 11766340 11766340 G A DRAXIN Missense_Mutation p.A9T 0.75 deleterious_low_confidence(0.04) benign(0.135) TCGA-22-5477-01 1 119584928 119584928 G A WARS2 Silent p.L158L 0.62 TCGA-22-5477-01 1 153658607 153658607 C T NPR1 Silent p.L563L 0.35 TCGA-22-5477-01 1 155006209 155006209 A T DCST2 5'UTR 0.20 TCGA-22-5477-01 1 155290668 155290668 G A RUSC1 5'Flank 0.55 TCGA-22-5477-01 1 158735720 158735720 G A OR6N1 Silent p.F251F 0.56 TCGA-22-5477-01 1 181701980 181701980 C A CACNA1E Missense_Mutation p.R920S 0.48 tolerated(0.1) benign(0.353) TCGA-22-5477-01 1 181765941 181765941 C T CACNA1E Missense_Mutation p.R2116C 0.14 deleterious(0.02) probably_damaging(0.919) TCGA-22-5477-01 1 182026213 182026213 G C ZNF648 Missense_Mutation p.F311L 0.56 tolerated(0.06) probably_damaging(0.965) TCGA-22-5477-01 1 202107154 202107154 C A ARL8A Missense_Mutation p.G73W 0.08 deleterious(0) probably_damaging(1) TCGA-22-5477-01 1 20412680 20412680 G A PLA2G5 Missense_Mutation p.G49S 0.62 deleterious(0.04) probably_damaging(0.999) TCGA-22-5477-01 1 229667455 229667455 G T ABCB10 Missense_Mutation p.L455M 0.10 tolerated(0.05) possibly_damaging(0.507) TCGA-22-5477-01 1 230401027 230401027 C T GALNT2 Nonsense_Mutation p.Q452* 0.42 TCGA-22-5477-01 1 230810750 230810750 A T COG2 Missense_Mutation p.K302N 0.46 tolerated(0.1) benign(0.003) TCGA-22-5477-01 1 240255883 240255883 G A FMN2 Silent p.P158P 0.38 TCGA-22-5477-01 1 248343731 248343731 C T OR2M2 Silent p.S148S 0.04 TCGA-22-5477-01 1 43161906 43161906 C T YBX1 Missense_Mutation p.R101C 0.68 deleterious(0.04) benign(0.001) TCGA-22-5477-01 1 45232773 45232773 C T KIF2C Silent p.V700V 0.84 TCGA-22-5477-01 1 45981401 45981401 C G PRDX1 Missense_Mutation p.R62T 0.35 deleterious(0) possibly_damaging(0.642) TCGA-22-5477-01 1 6592578 6592578 G A NOL9 Missense_Mutation p.H494Y 0.64 tolerated(0.19) benign(0.107) TCGA-22-5477-01 1 92200510 92200510 C G TGFBR3 Missense_Mutation p.E131Q 0.72 tolerated(0.38) benign(0.005) TCGA-22-5477-01 20 1961091 1961091 G A PDYN Missense_Mutation p.R215C 0.56 deleterious(0) probably_damaging(1) TCGA-22-5477-01 20 50342415 50342415 G A ATP9A Silent p.C90C 0.30 TCGA-22-5477-01 20 56140109 56140109 C A PCK1 Silent p.V444V 0.33 TCGA-22-5477-01 20 60963410 60963410 A T RPS21 Missense_Mutation p.I78F 0.41 tolerated(0.09) benign(0.419) TCGA-22-5477-01 20 60969315 60969315 C T CABLES2 Silent p.L204L 0.32 TCGA-22-5477-01 21 37445228 37445228 G C CBR1 3'UTR 0.60 TCGA-22-5477-01 21 41648044 41648044 G A DSCAM Missense_Mutation p.S779F 0.83 deleterious(0.01) possibly_damaging(0.595) TCGA-22-5477-01 22 23223438 23223438 A T IGLV3-1 Missense_Mutation p.S70C 0.30 deleterious(0) possibly_damaging(0.738) TCGA-22-5477-01 22 26083535 26083535 C T ADRBK2 Silent p.H286H 0.32 TCGA-22-5477-01 22 26100154 26100154 C T ADRBK2 Missense_Mutation p.R436W 0.24 deleterious(0) probably_damaging(0.997) TCGA-22-5477-01 22 26902880 26902880 G A TFIP11 Missense_Mutation p.S75F 0.23 deleterious(0) possibly_damaging(0.794) TCGA-22-5477-01 22 37628865 37628865 G C RAC2 Silent p.L67L 0.15 TCGA-22-5477-01 22 44028021 44028021 C T EFCAB6 Silent p.L732L 0.30 TCGA-22-5477-01 22 51160628 51160628 C G SHANK3 Missense_Mutation p.S1472C 0.35 possibly_damaging(0.592) TCGA-22-5477-01 2 109086935 109086935 G C GCC2 Missense_Mutation p.E384Q 0.27 deleterious(0.03) probably_damaging(0.994) TCGA-22-5477-01 2 113504023 113504023 C A CKAP2L Nonsense_Mutation p.E578* 0.45 TCGA-22-5477-01 2 162865769 162865769 T C DPP4 Silent p.R623R 0.88 TCGA-22-5477-01 2 178098944 178098944 C T NFE2L2 Missense_Mutation p.R34Q 0.81 deleterious(0) probably_damaging(0.999) TCGA-22-5477-01 2 178417117 178417117 G T TTC30B Missense_Mutation p.S125R 0.79 tolerated(0.5) benign(0.011) TCGA-22-5477-01 2 179395596 179395596 G C TTN Missense_Mutation p.S35249C 0.09 TCGA-22-5477-01 2 179605171 179605171 C T TTN Silent p.L4263L 0.73 TCGA-22-5477-01 2 186678693 186678693 C G FSIP2 Missense_Mutation p.A6839G 0.15 benign(0.029) TCGA-22-5477-01 2 1926282 1926282 G C MYT1L Missense_Mutation p.S420C 0.36 deleterious(0) probably_damaging(1) TCGA-22-5477-01 2 20511297 20511297 C G PUM2 Missense_Mutation p.R159T 0.37 tolerated_low_confidence(0.1) benign(0.431) TCGA-22-5477-01 2 27456574 27456574 T C CAD Silent p.N1099N 0.44 TCGA-22-5477-01 2 29295660 29295660 C T C2orf71 Missense_Mutation p.E490K 0.42 tolerated(0.53) benign(0.14) TCGA-22-5477-01 2 32475940 32475940 C G NLRC4 Missense_Mutation p.L331F 0.46 deleterious(0.01) probably_damaging(0.951) TCGA-22-5477-01 3 136019916 136019916 C T PCCB Missense_Mutation p.S330L 0.21 deleterious_low_confidence(0) possibly_damaging(0.597) TCGA-22-5477-01 3 157839907 157839907 C A RSRC1 Nonsense_Mutation p.S5* 0.51 TCGA-22-5477-01 3 170824507 170824507 G C TNIK Intron 0.52 TCGA-22-5477-01 3 176769461 176769461 G A TBL1XR1 Silent p.A86A 0.52 TCGA-22-5477-01 3 179537757 179537757 G A PEX5L Missense_Mutation p.T277I 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-22-5477-01 3 48627135 48627135 C T COL7A1 Silent p.V689V 0.84 TCGA-22-5477-01 3 9101963 9101963 G C SRGAP3 Missense_Mutation p.N251K 0.69 deleterious(0) possibly_damaging(0.904) TCGA-22-5477-01 4 126355451 126355451 T A FAT4 Missense_Mutation p.V2357D 0.32 possibly_damaging(0.724) TCGA-22-5477-01 4 151765298 151765298 T C LRBA Missense_Mutation p.Q1508R 0.45 deleterious(0.01) benign(0.005) TCGA-22-5477-01 4 177650746 177650746 G C VEGFC Nonsense_Mutation p.S101* 0.26 TCGA-22-5477-01 4 46043256 46043256 G T GABRG1 Missense_Mutation p.H383N 0.51 tolerated(0.3) benign(0.032) TCGA-22-5477-01 4 52890291 52890291 G C SGCB Silent p.V263V 0.43 TCGA-22-5477-01 4 55974034 55974034 G C KDR Missense_Mutation p.L428V 0.35 tolerated(0.68) benign(0.012) TCGA-22-5477-01 4 57335839 57335839 G C SRP72 Missense_Mutation p.D44H 0.09 deleterious(0) probably_damaging(0.981) TCGA-22-5477-01 4 72620739 72620739 C T GC Missense_Mutation p.E393K 0.43 deleterious(0.04) benign(0.084) TCGA-22-5477-01 4 80328221 80328221 C G GK2 Silent p.G378G 0.27 TCGA-22-5477-01 5 10748327 10748327 C G DAP Missense_Mutation p.E38Q 0.29 tolerated(0.24) benign(0.44) TCGA-22-5477-01 5 139938091 139938091 G A APBB3 3'UTR 0.69 TCGA-22-5477-01 5 140580260 140580260 G A PCDHB11 Missense_Mutation p.A305T 0.63 tolerated_low_confidence(0.1) benign(0.142) TCGA-22-5477-01 5 175933902 175933902 G C FAF2 Missense_Mutation p.G430A 0.06 deleterious(0) probably_damaging(1) TCGA-22-5477-01 5 179249985 179249985 C T SQSTM1 Missense_Mutation p.S78F 0.88 deleterious(0) probably_damaging(0.999) TCGA-22-5477-01 5 38950055 38950055 T C RICTOR Missense_Mutation p.R1299G 0.09 tolerated(0.1) possibly_damaging(0.743) TCGA-22-5477-01 6 129714246 129714246 A G LAMA2 Missense_Mutation p.E1764G 0.46 tolerated(0.14) benign(0.001) TCGA-22-5477-01 6 136589359 136589359 G A BCLAF1 Missense_Mutation p.H780Y 0.23 tolerated(0.21) benign(0.291) TCGA-22-5477-01 6 151670166 151670166 G A AKAP12 Missense_Mutation p.D214N 0.48 tolerated(0.07) probably_damaging(0.999) TCGA-22-5477-01 6 167592022 167592022 G C TCP10L2 Missense_Mutation p.D217H 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-22-5477-01 6 26217184 26217184 C G HIST1H2AE 5'UTR 0.82 TCGA-22-5477-01 6 26638316 26638316 G C ZNF322 Missense_Mutation p.L156V 0.85 tolerated(0.11) benign(0.194) TCGA-22-5477-01 6 3225089 3225089 C T TUBB2B Missense_Mutation p.E412K 0.56 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-22-5477-01 6 56341132 56341132 G C DST Missense_Mutation p.L4604V 0.45 possibly_damaging(0.842) TCGA-22-5477-01 6 75892986 75892986 G A COL12A1 Silent p.F557F 0.41 TCGA-22-5477-01 6 94120288 94120288 C T EPHA7 Missense_Mutation p.E255K 0.38 deleterious(0) possibly_damaging(0.651) TCGA-22-5477-01 7 100348836 100348836 C T ZAN Missense_Mutation p.T518M 0.34 possibly_damaging(0.902) TCGA-22-5477-01 7 107204283 107204283 G T COG5 Missense_Mutation p.A51E 0.39 tolerated_low_confidence(0.08) benign(0.099) TCGA-22-5477-01 7 120911387 120911388 - A CPED1 Frame_Shift_Ins p.H927Tfs*4 0.30 TCGA-22-5477-01 7 122635238 122635238 G C TAS2R16 Missense_Mutation p.Q151E 0.24 tolerated(0.3) benign(0.058) TCGA-22-5477-01 7 129856090 129856090 C T SSMEM1 Missense_Mutation p.S172L 0.44 deleterious(0.04) possibly_damaging(0.504) TCGA-22-5477-01 7 138265404 138265404 G A TRIM24 Missense_Mutation p.E895K 0.41 tolerated(0.34) benign(0.001) TCGA-22-5477-01 7 140301990 140301990 C T DENND2A Missense_Mutation p.G70R 0.51 tolerated(0.12) benign(0.232) TCGA-22-5477-01 7 143175246 143175246 C T TAS2R41 Missense_Mutation p.S94L 0.40 deleterious(0.01) benign(0.098) TCGA-22-5477-01 7 39745995 39745995 C G RALA 3'UTR 0.52 TCGA-22-5477-01 7 40134111 40134111 C T CDK13 Silent p.S1357S 0.34 TCGA-22-5477-01 7 87329807 87329807 A T RUNDC3B Missense_Mutation p.K120N 0.25 tolerated(0.1) possibly_damaging(0.838) TCGA-22-5477-01 8 141716272 141716272 G A PTK2 Silent p.S725S 0.47 TCGA-22-5477-01 8 143623493 143623493 C T BAI1 Missense_Mutation p.P1300S 0.34 tolerated(0.38) possibly_damaging(0.641) TCGA-22-5477-01 8 145009237 145009237 G A PLEC Missense_Mutation p.S393L 0.38 unknown(0) TCGA-22-5477-01 8 41834781 41834781 G A KAT6A Missense_Mutation p.L370F 0.45 possibly_damaging(0.791) TCGA-22-5477-01 8 48711773 48711773 G C PRKDC Nonsense_Mutation p.S3431* 0.38 TCGA-22-5477-01 8 52233370 52233370 C T PXDNL Missense_Mutation p.E1412K 0.45 deleterious(0.01) benign(0.388) TCGA-22-5477-01 8 55538285 55538285 T A RP1 Missense_Mutation p.F615I 0.08 tolerated(0.4) benign(0.05) TCGA-22-5477-01 8 61655054 61655054 T C CHD7 Missense_Mutation p.S355P 0.27 benign(0) TCGA-22-5477-01 8 77745601 77745601 G C ZFHX4 Missense_Mutation p.C1118S 0.67 benign(0.001) TCGA-22-5477-01 8 99961477 99961477 G - OSR2 Frame_Shift_Del p.A101Pfs*36 0.10 TCGA-22-5477-01 9 107379799 107379799 G C OR13C9 Missense_Mutation p.H229Q 0.42 deleterious(0.01) benign(0.049) TCGA-22-5477-01 9 109688263 109688263 G A ZNF462 Silent p.V690V 0.39 TCGA-22-5477-01 9 117400911 117400911 G A C9orf91 Missense_Mutation p.E252K 0.44 deleterious(0.01) possibly_damaging(0.833) TCGA-22-5477-01 9 117827085 117827085 C T TNC Missense_Mutation p.E1110K 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-22-5477-01 9 127995969 127995969 G C RABEPK Missense_Mutation p.E277Q 0.38 tolerated(0.06) benign(0.054) TCGA-22-5477-01 9 133927932 133927932 T C LAMC3 Missense_Mutation p.F562S 0.08 deleterious(0) probably_damaging(0.984) TCGA-22-5477-01 9 139311436 139311436 C T PMPCA Missense_Mutation p.R223C 0.45 deleterious(0) probably_damaging(0.987) TCGA-22-5477-01 9 139946697 139946697 G C ENTPD2 Missense_Mutation p.S74C 0.53 tolerated(0.07) possibly_damaging(0.57) TCGA-22-5477-01 9 140437924 140437924 G A PNPLA7 Missense_Mutation p.H156Y 0.44 deleterious(0) possibly_damaging(0.713) TCGA-22-5477-01 9 140611570 140611570 C A EHMT1 Missense_Mutation p.A193D 0.24 deleterious_low_confidence(0.01) benign(0.103) TCGA-22-5477-01 9 21971036 21971036 C A CDKN2A Missense_Mutation p.D108Y 0.91 deleterious(0) probably_damaging(1) TCGA-22-5477-01 9 97207434 97207434 G A HIATL1 Silent p.Q233Q 0.36 TCGA-22-5477-01 X 150911982 150911982 C T CNGA2 Missense_Mutation p.T336I 0.92 deleterious(0) probably_damaging(1) TCGA-22-5477-01 X 21670577 21670577 G A CNKSR2 Missense_Mutation p.E1015K 0.83 tolerated(0.1) possibly_damaging(0.504) TCGA-22-5477-01 X 83723533 83723533 G C HDX Missense_Mutation p.H400D 0.92 tolerated(0.64) benign(0.073) TCGA-22-5477-01 X 91132573 91132573 C A PCDH11X Missense_Mutation p.P445H 0.91 tolerated(0.06) probably_damaging(0.987) TCGA-22-5478-01 10 124335935 124335935 C T DMBT1 Silent p.L102L 0.34 TCGA-22-5478-01 10 33197297 33197297 G A ITGB1 Missense_Mutation p.T777M 0.29 deleterious(0.03) benign(0.411) TCGA-22-5478-01 10 55566720 55566720 G T PCDH15 Silent p.T1555T 0.16 TCGA-22-5478-01 10 7205784 7205784 C G SFMBT2 Missense_Mutation p.C878S 0.15 deleterious(0) probably_damaging(0.999) TCGA-22-5478-01 10 91162119 91162119 C T IFIT1 Silent p.D29D 0.19 TCGA-22-5478-01 10 96493185 96493185 T A CYP2C18 Silent p.P427P 0.37 TCGA-22-5478-01 11 114441738 114441738 T C NXPE4 Silent p.A519A 0.38 TCGA-22-5478-01 11 118037569 118037569 C T SCN2B 3'UTR 0.27 TCGA-22-5478-01 11 123599838 123599838 G C ZNF202 Nonsense_Mutation p.S233* 0.44 TCGA-22-5478-01 11 124440091 124440091 C A OR8A1 Missense_Mutation p.P43T 0.35 deleterious(0) possibly_damaging(0.78) TCGA-22-5478-01 11 49175797 49175797 G T FOLH1 Missense_Mutation p.T624K 0.12 tolerated(1) benign(0) TCGA-22-5478-01 11 5068517 5068517 C A OR52J3 Silent p.I254I 0.26 TCGA-22-5478-01 11 5068518 5068518 C A OR52J3 Missense_Mutation p.P255T 0.26 deleterious(0.01) probably_damaging(1) TCGA-22-5478-01 11 55419293 55419293 T A OR4S2 Missense_Mutation p.F305Y 0.22 tolerated(0.71) benign(0.003) TCGA-22-5478-01 11 55432917 55432917 T C OR4C6 Missense_Mutation p.L92P 0.31 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-22-5478-01 11 55432918 55432918 C A OR4C6 Silent p.L92L 0.33 TCGA-22-5478-01 11 55681789 55681789 C G OR5W2 Missense_Mutation p.K90N 0.32 tolerated(0.05) benign(0.038) TCGA-22-5478-01 11 5602557 5602557 T A OR52B6 Missense_Mutation p.Y151N 0.18 deleterious(0) probably_damaging(0.999) TCGA-22-5478-01 11 56086487 56086487 G T OR8K3 Missense_Mutation p.K235N 0.30 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-22-5478-01 11 5719584 5719584 T A TRIM22 Missense_Mutation p.F187I 0.10 deleterious(0) probably_damaging(0.988) TCGA-22-5478-01 11 5968711 5968711 C G OR56A3 Silent p.A45A 0.27 TCGA-22-5478-01 11 60696322 60696322 G T TMEM132A Silent p.L252L 0.28 TCGA-22-5478-01 11 62298384 62298384 C A AHNAK Missense_Mutation p.V1169L 0.17 benign(0.016) TCGA-22-5478-01 11 65623490 65623490 G A CFL1 Missense_Mutation p.P76L 0.11 deleterious(0.05) possibly_damaging(0.844) TCGA-22-5478-01 11 73997283 73997286 AGGG - P4HA3 Frame_Shift_Del p.T307Rfs*88 0.22 TCGA-22-5478-01 11 77412453 77412453 T C RSF1 Silent p.P607P 0.39 TCGA-22-5478-01 12 113388514 113388514 G A OAS3 Missense_Mutation p.R464Q 0.07 deleterious(0.01) probably_damaging(0.965) TCGA-22-5478-01 12 123419863 123419863 T C ABCB9 Missense_Mutation p.N620S 0.19 deleterious(0) probably_damaging(0.936) TCGA-22-5478-01 12 130922965 130922965 C A RIMBP2 Missense_Mutation p.G517V 0.24 deleterious(0) probably_damaging(1) TCGA-22-5478-01 12 45823018 45823018 T C ANO6 Missense_Mutation p.M907T 0.36 deleterious(0) benign(0.028) TCGA-22-5478-01 12 46320550 46320550 T C SCAF11 Silent p.P978P 0.28 TCGA-22-5478-01 12 48249545 48249545 C A VDR Missense_Mutation p.S258I 0.26 tolerated(0.12) benign(0.142) TCGA-22-5478-01 12 52281924 52281924 C G ANKRD33 5'UTR 0.12 TCGA-22-5478-01 12 53428431 53428431 G T EIF4B Missense_Mutation p.R415L 0.13 deleterious(0.03) possibly_damaging(0.83) TCGA-22-5478-01 12 7848323 7848323 A G GDF3 Translation_Start_Site p.M1? 0.20 deleterious_low_confidence(0) possibly_damaging(0.775) TCGA-22-5478-01 12 97137324 97137324 T C C12orf55 Missense_Mutation p.M2455T 0.18 tolerated(0.22) benign(0) TCGA-22-5478-01 12 990939 990939 G A WNK1 Missense_Mutation p.A1065T 0.22 tolerated(0.18) possibly_damaging(0.469) TCGA-22-5478-01 13 109707450 109707450 A G MYO16 Silent p.P1013P 0.41 TCGA-22-5478-01 13 25841966 25841966 T A MTMR6 Missense_Mutation p.E85D 0.15 tolerated(0.17) benign(0.056) TCGA-22-5478-01 13 84453702 84453702 C A SLITRK1 Missense_Mutation p.K647N 0.35 deleterious(0) probably_damaging(0.954) TCGA-22-5478-01 14 101351132 101351132 G A RTL1 5'UTR 0.11 TCGA-22-5478-01 14 23465159 23465159 A G C14orf93 Missense_Mutation p.S306P 0.06 deleterious_low_confidence(0.01) probably_damaging(0.959) TCGA-22-5478-01 14 23588252 23588252 G A CEBPE Missense_Mutation p.P17S 0.09 tolerated(0.32) benign(0.002) TCGA-22-5478-01 14 42356142 42356142 A G LRFN5 Missense_Mutation p.H105R 0.23 deleterious(0) probably_damaging(1) TCGA-22-5478-01 14 60582115 60582115 A G PCNXL4 Silent p.V197V 0.24 TCGA-22-5478-01 14 74083780 74083780 G T ACOT6 5'UTR 0.26 TCGA-22-5478-01 14 74538983 74538983 G T ALDH6A1 Missense_Mutation p.P91T 0.31 tolerated(0.17) benign(0.124) TCGA-22-5478-01 14 95081268 95081268 G C SERPINA3 Missense_Mutation p.E164Q 0.17 deleterious(0.05) possibly_damaging(0.623) TCGA-22-5478-01 14 95562709 95562709 T A DICER1 Missense_Mutation p.K1516N 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-22-5478-01 15 25342885 25342886 TC - SNORD116-25 RNA 0.16 TCGA-22-5478-01 15 31330029 31330029 G T TRPM1 Missense_Mutation p.A836D 0.32 tolerated(0.41) benign(0.347) TCGA-22-5478-01 15 50474989 50474990 - G SLC27A2 Frame_Shift_Ins p.L124Afs*50 0.27 TCGA-22-5478-01 15 70960257 70960257 G A UACA Silent p.Y922Y 0.25 TCGA-22-5478-01 15 75562314 75562314 G A GOLGA6C Missense_Mutation p.G648S 0.35 tolerated(0.19) benign(0.005) TCGA-22-5478-01 15 79356805 79356805 C A RASGRF1 Missense_Mutation p.A114S 0.18 deleterious(0.03) benign(0.015) TCGA-22-5478-01 15 91513658 91513658 A T PRC1 Silent p.S516S 0.21 TCGA-22-5478-01 16 12758835 12758835 C T CPPED1 Missense_Mutation p.A285T 0.13 tolerated(0.37) benign(0.006) TCGA-22-5478-01 16 20348632 20348633 - T UMOD Frame_Shift_Ins p.M574Nfs*3 0.35 TCGA-22-5478-01 16 21082070 21082070 A G DNAH3 Silent p.C1054C 0.16 TCGA-22-5478-01 16 24788444 24788444 G T TNRC6A Missense_Mutation p.Q118H 0.26 tolerated_low_confidence(0.13) benign(0.092) TCGA-22-5478-01 16 30667432 30667434 GCT A PRR14 Frame_Shift_Del p.A520Sfs*35 0.35 TCGA-22-5478-01 16 69782934 69782934 C A NOB1 Missense_Mutation p.G205W 0.34 deleterious(0) probably_damaging(0.925) TCGA-22-5478-01 16 75263738 75263738 C A BCAR1 Missense_Mutation p.V808L 0.25 deleterious(0.01) probably_damaging(0.996) TCGA-22-5478-01 16 78064380 78064380 A T CLEC3A Missense_Mutation p.Y88F 0.11 tolerated(1) probably_damaging(0.998) TCGA-22-5478-01 16 89950999 89950999 A G TCF25 Missense_Mutation p.S122G 0.36 tolerated(0.06) benign(0.005) TCGA-22-5478-01 17 5086085 5086085 C A ZNF594 Missense_Mutation p.Q489H 0.41 deleterious(0.02) probably_damaging(0.961) TCGA-22-5478-01 17 61776255 61776255 C T LIMD2 Missense_Mutation p.C43Y 0.23 deleterious(0) probably_damaging(1) TCGA-22-5478-01 17 62018275 62018275 C A SCN4A Silent p.S1789S 0.32 TCGA-22-5478-01 17 62856410 62856410 G A LRRC37A3 Missense_Mutation p.A1285V 0.06 deleterious(0) probably_damaging(0.985) TCGA-22-5478-01 17 66267094 66267094 G T SLC16A6 Missense_Mutation p.H403N 0.40 deleterious(0) probably_damaging(0.999) TCGA-22-5478-01 17 72305467 72305467 C T DNAI2 Silent p.D429D 0.10 TCGA-22-5478-01 17 7253320 7253320 G C ACAP1 Silent p.A636A 0.11 TCGA-22-5478-01 17 73569291 73569291 G A LLGL2 Missense_Mutation p.R886H 0.29 tolerated(0.63) benign(0.028) TCGA-22-5478-01 17 7577099 7577099 C A TP53 Missense_Mutation p.R280I 0.43 deleterious(0) probably_damaging(0.977) TCGA-22-5478-01 17 77808067 77808067 C G CBX4 Silent p.P458P 0.17 TCGA-22-5478-01 18 29848010 29848010 A C GAREM Missense_Mutation p.S819A 0.54 tolerated(0.27) benign(0.217) TCGA-22-5478-01 18 44560338 44560338 A T TCEB3B Missense_Mutation p.V433D 0.68 tolerated(0.08) benign(0.421) TCGA-22-5478-01 18 47801500 47801500 G A MBD1 Missense_Mutation p.P303L 0.24 tolerated(0.93) benign(0.001) TCGA-22-5478-01 18 55027340 55027340 A G ST8SIA3 Silent p.G325G 0.24 TCGA-22-5478-01 18 74091723 74091723 G A ZNF516 Missense_Mutation p.H783Y 0.33 deleterious(0) probably_damaging(0.995) TCGA-22-5478-01 19 17835910 17835910 G T MAP1S Missense_Mutation p.G119V 0.35 deleterious(0) probably_damaging(1) TCGA-22-5478-01 19 18876308 18876308 C G CRTC1 Silent p.P343P 0.06 TCGA-22-5478-01 19 22155467 22155467 G T ZNF208 Missense_Mutation p.A790E 0.28 deleterious(0.03) benign(0.006) TCGA-22-5478-01 19 22271749 22271749 C T ZNF257 Silent p.A399A 0.17 TCGA-22-5478-01 19 24309770 24309770 A T ZNF254 Missense_Mutation p.K323M 0.39 deleterious(0) possibly_damaging(0.769) TCGA-22-5478-01 19 36213498 36213498 G A KMT2B Missense_Mutation p.R867H 0.25 probably_damaging(0.964) TCGA-22-5478-01 19 37427735 37427735 G A ZNF568 Missense_Mutation p.D75N 0.06 tolerated(0.19) probably_damaging(0.997) TCGA-22-5478-01 19 44791606 44791606 C A ZNF235 Missense_Mutation p.G661V 0.25 deleterious(0) probably_damaging(1) TCGA-22-5478-01 19 45895260 45895260 C G PPP1R13L Missense_Mutation p.E565Q 0.32 deleterious(0.04) benign(0.403) TCGA-22-5478-01 19 46190942 46190942 C T SNRPD2 Missense_Mutation p.E76K 0.08 deleterious(0.04) possibly_damaging(0.499) TCGA-22-5478-01 19 47912500 47912500 G A MEIS3 Silent p.D238D 0.38 TCGA-22-5478-01 19 48254807 48254807 A C GLTSCR2 Missense_Mutation p.D210A 0.27 deleterious(0) probably_damaging(0.992) TCGA-22-5478-01 19 51499268 51499268 C G KLK8 3'UTR 0.12 TCGA-22-5478-01 19 52536966 52536966 T A ZNF432 3'UTR 0.05 TCGA-22-5478-01 19 55451047 55451047 C T NLRP7 Silent p.G380G 0.44 TCGA-22-5478-01 19 9073731 9073731 G T MUC16 Missense_Mutation p.S4572Y 0.36 unknown(0) TCGA-22-5478-01 19 9083825 9083825 A C MUC16 Missense_Mutation p.S2664A 0.40 unknown(0) TCGA-22-5478-01 1 110255794 110255794 G T GSTM5 Missense_Mutation p.D56Y 0.22 deleterious(0) probably_damaging(0.932) TCGA-22-5478-01 1 1267896 1267896 G A TAS1R3 Missense_Mutation p.A329T 0.20 tolerated(0.25) possibly_damaging(0.543) TCGA-22-5478-01 1 144520878 144520878 A G AL592284.1 3'UTR 0.40 TCGA-22-5478-01 1 150680853 150680853 C G HORMAD1 Missense_Mutation p.L142F 0.30 deleterious(0.04) benign(0.016) TCGA-22-5478-01 1 153963257 153963257 C T RPS27 5'UTR 0.12 TCGA-22-5478-01 1 155785975 155785975 G C GON4L Intron 0.25 TCGA-22-5478-01 1 158516935 158516935 C G OR6Y1 Missense_Mutation p.G321R 0.29 tolerated(0.43) benign(0) TCGA-22-5478-01 1 158517161 158517161 G T OR6Y1 Silent p.T245T 0.13 TCGA-22-5478-01 1 158517162 158517162 G T OR6Y1 Missense_Mutation p.T245N 0.13 deleterious(0) probably_damaging(0.995) TCGA-22-5478-01 1 158615049 158615049 G A SPTA1 Silent p.L1375L 0.22 TCGA-22-5478-01 1 159283536 159283536 C T OR10J3 Missense_Mutation p.R305H 0.25 tolerated(0.54) benign(0.011) TCGA-22-5478-01 1 174188304 174188304 C T RABGAP1L Silent p.V3V 0.11 TCGA-22-5478-01 1 17674483 17674483 C A PADI4 Silent p.P365P 0.21 TCGA-22-5478-01 1 179631350 179631350 G A TDRD5 Missense_Mutation p.A812T 0.22 tolerated(0.05) benign(0.301) TCGA-22-5478-01 1 186934540 186934540 G T PLA2G4A Splice_Site p.X527_splice 0.28 TCGA-22-5478-01 1 197021801 197021801 G T F13B Missense_Mutation p.N506K 0.29 deleterious(0.02) benign(0.15) TCGA-22-5478-01 1 202724408 202724408 T C KDM5B Missense_Mutation p.Y510C 0.27 deleterious(0) probably_damaging(0.995) TCGA-22-5478-01 1 20474719 20474719 G A PLA2G2F Missense_Mutation p.C154Y 0.28 deleterious(0) probably_damaging(1) TCGA-22-5478-01 1 207646933 207646933 T C CR2 Silent p.G674G 0.34 TCGA-22-5478-01 1 237813240 237813240 C - RYR2 Frame_Shift_Del p.P2526Hfs*3 0.26 TCGA-22-5478-01 1 240255953 240255953 G T FMN2 Missense_Mutation p.D182Y 0.33 unknown(0) TCGA-22-5478-01 1 248059542 248059542 C G OR2W3 Nonsense_Mutation p.Y218* 0.23 TCGA-22-5478-01 1 248616506 248616506 C A OR2T2 Silent p.L136L 0.11 TCGA-22-5478-01 1 24995804 24995804 A G SRRM1 Missense_Mutation p.R644G 0.27 unknown(0) TCGA-22-5478-01 1 67243030 67243030 G T TCTEX1D1 Nonsense_Mutation p.G145* 0.31 TCGA-22-5478-01 1 77752625 77752625 G T AK5 Splice_Site p.X21_splice 0.22 TCGA-22-5478-01 20 20278858 20278858 G A C20orf26 Missense_Mutation p.G1084R 0.10 deleterious(0) possibly_damaging(0.824) TCGA-22-5478-01 20 23346140 23346140 G A GZF1 Missense_Mutation p.E374K 0.04 deleterious(0.04) possibly_damaging(0.471) TCGA-22-5478-01 20 30661123 30661123 G A HCK Missense_Mutation p.G62E 0.78 tolerated(0.8) benign(0.06) TCGA-22-5478-01 20 31393144 31393144 G T DNMT3B Missense_Mutation p.R744S 0.40 deleterious(0.02) probably_damaging(0.982) TCGA-22-5478-01 20 61300296 61300296 C A SLCO4A1 Missense_Mutation p.P631T 0.13 deleterious(0) probably_damaging(1) TCGA-22-5478-01 21 46086662 46086662 C T KRTAP12-2 Missense_Mutation p.V48M 0.38 tolerated(0.08) benign(0.055) TCGA-22-5478-01 22 17117949 17117949 G T TPTEP1 RNA 0.57 TCGA-22-5478-01 22 38882080 38882080 G C DDX17 Missense_Mutation p.R686G 0.19 tolerated_low_confidence(0.08) possibly_damaging(0.796) TCGA-22-5478-01 22 39771977 39771977 C T SYNGR1 Intron 0.24 TCGA-22-5478-01 2 108487432 108487432 C A RGPD4 Missense_Mutation p.P991H 0.22 deleterious(0.01) probably_damaging(0.984) TCGA-22-5478-01 2 11054092 11054092 G T KCNF1 3'UTR 0.54 TCGA-22-5478-01 2 11054093 11054093 G A KCNF1 3'UTR 0.54 TCGA-22-5478-01 2 113785627 113785627 A G IL36B Intron 0.07 TCGA-22-5478-01 2 120129848 120129848 C G DBI Missense_Mutation p.A134G 0.23 deleterious(0.01) possibly_damaging(0.826) TCGA-22-5478-01 2 128394440 128394440 G A MYO7B Silent p.A2067A 0.15 TCGA-22-5478-01 2 133531428 133531428 C A NCKAP5 Missense_Mutation p.D1697Y 0.19 deleterious(0) probably_damaging(0.947) TCGA-22-5478-01 2 162276709 162276709 T G TBR1 Missense_Mutation p.I377M 0.05 deleterious(0) probably_damaging(0.981) TCGA-22-5478-01 2 165802148 165802148 C A SLC38A11 Missense_Mutation p.G51W 0.16 deleterious(0) probably_damaging(1) TCGA-22-5478-01 2 167328866 167328866 T A SCN7A Missense_Mutation p.D178V 0.27 deleterious(0) probably_damaging(0.993) TCGA-22-5478-01 2 179422805 179422805 A G TTN Silent p.N29092N 0.31 TCGA-22-5478-01 2 179455978 179455978 A T TTN Silent p.G20158G 0.04 TCGA-22-5478-01 2 179611166 179611166 C A TTN Intron 0.22 TCGA-22-5478-01 2 20113879 20113879 T C WDR35 Missense_Mutation p.Y1105C 0.39 deleterious(0) possibly_damaging(0.855) TCGA-22-5478-01 2 206631516 206631516 C A NRP2 Nonsense_Mutation p.S805* 0.04 TCGA-22-5478-01 2 219614020 219614020 G T TTLL4 Missense_Mutation p.R882L 0.21 deleterious(0.01) benign(0.258) TCGA-22-5478-01 2 220089411 220089411 G A ATG9A Silent p.L228L 0.21 TCGA-22-5478-01 2 24413499 24413499 G T FAM228A Nonstop_Mutation p.*207Lext*42 0.20 TCGA-22-5478-01 2 27884318 27884318 T C SUPT7L Intron 0.29 TCGA-22-5478-01 2 31133804 31133804 G A GALNT14 Missense_Mutation p.S546L 0.26 deleterious(0.04) possibly_damaging(0.905) TCGA-22-5478-01 2 32117201 32117201 T C MEMO1 Missense_Mutation p.H147R 0.35 tolerated(0.76) benign(0.002) TCGA-22-5478-01 2 55435829 55435829 C A CLHC1 Nonsense_Mutation p.E278* 0.43 TCGA-22-5478-01 2 71376518 71376518 A T MPHOSPH10 Missense_Mutation p.S611C 0.53 deleterious(0) probably_damaging(0.918) TCGA-22-5478-01 2 71743340 71743340 G T DYSF Missense_Mutation p.G307W 0.42 deleterious(0.02) benign(0.081) TCGA-22-5478-01 2 75113668 75113668 T A HK2 Missense_Mutation p.V696E 0.12 deleterious(0) probably_damaging(0.999) TCGA-22-5478-01 2 79349183 79349183 G C REG1A Missense_Mutation p.A85P 0.36 deleterious(0) probably_damaging(0.988) TCGA-22-5478-01 2 80530771 80530771 G C LRRTM1 Silent p.T58T 0.16 TCGA-22-5478-01 3 108474568 108474568 G T RETNLB 3'UTR 0.33 TCGA-22-5478-01 3 109049395 109049395 C A DPPA4 Missense_Mutation p.V219L 0.28 tolerated(0.11) benign(0.133) TCGA-22-5478-01 3 123663744 123663744 A T CCDC14 Missense_Mutation p.I439K 0.36 deleterious(0) benign(0.049) TCGA-22-5478-01 3 124438217 124438217 G A RP11-71H17.7 5'Flank 0.29 TCGA-22-5478-01 3 124746240 124746240 C T HEG1 Missense_Mutation p.G241E 0.20 tolerated_low_confidence(0.19) benign(0.006) TCGA-22-5478-01 3 126180940 126180940 G C ZXDC Missense_Mutation p.A522G 0.37 tolerated(0.84) benign(0) TCGA-22-5478-01 3 169540634 169540634 G T LRRIQ4 Missense_Mutation p.D309Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-22-5478-01 3 180328311 180328311 G T TTC14 Missense_Mutation p.G765V 0.29 deleterious_low_confidence(0) unknown(0) TCGA-22-5478-01 3 183994295 183994295 T A ECE2 Intron 0.47 TCGA-22-5478-01 3 32994962 32994962 C A CCR4 Nonsense_Mutation p.Y16* 0.38 TCGA-22-5478-01 3 38791575 38791575 G T SCN10A Missense_Mutation p.S619Y 0.32 deleterious(0) probably_damaging(0.971) TCGA-22-5478-01 3 45879503 45879503 A T LZTFL1 Missense_Mutation p.I15N 0.17 deleterious(0.01) benign(0.252) TCGA-22-5478-01 4 100235125 100235126 - T ADH1B Frame_Shift_Ins p.D228Gfs*13 0.26 TCGA-22-5478-01 4 102992450 102992450 A G BANK1 Missense_Mutation p.H744R 0.33 deleterious(0) probably_damaging(0.994) TCGA-22-5478-01 4 114274838 114274838 G C ANK2 Missense_Mutation p.Q1688H 0.20 benign(0.007) TCGA-22-5478-01 4 128851838 128851838 T A MFSD8 Missense_Mutation p.K333M 0.14 tolerated(0.06) benign(0.213) TCGA-22-5478-01 4 187201392 187201392 C A F11 Nonsense_Mutation p.S294* 0.27 TCGA-22-5478-01 4 2200252 2200252 G A POLN Missense_Mutation p.R303W 0.14 tolerated(0.2) benign(0.117) TCGA-22-5478-01 4 25146715 25146715 A T SEPSECS Nonsense_Mutation p.L282* 0.46 TCGA-22-5478-01 4 38047524 38047524 A G TBC1D1 Silent p.K543K 0.08 TCGA-22-5478-01 4 57873010 57873010 C T POLR2B Missense_Mutation p.R416W 0.12 tolerated(0.1) probably_damaging(0.984) TCGA-22-5478-01 4 74306466 74306466 C G AFP Missense_Mutation p.Q140E 0.31 tolerated(0.48) possibly_damaging(0.525) TCGA-22-5478-01 4 76551200 76551200 T C CDKL2 Intron 0.30 TCGA-22-5478-01 4 77661990 77661990 C G SHROOM3 Missense_Mutation p.S888R 0.35 deleterious(0) probably_damaging(0.99) TCGA-22-5478-01 4 84028998 84028998 C A PLAC8 Missense_Mutation p.W26L 0.23 deleterious(0) probably_damaging(0.973) TCGA-22-5478-01 4 96761853 96761853 C T PDHA2 Silent p.N184N 0.10 TCGA-22-5478-01 5 10410360 10410360 G T MARCH6 Missense_Mutation p.A555S 0.34 tolerated(0.39) benign(0.044) TCGA-22-5478-01 5 110835780 110835780 T - STARD4 Frame_Shift_Del p.K141Rfs*29 0.33 TCGA-22-5478-01 5 140531822 140531822 G T PCDHB6 Missense_Mutation p.D662Y 0.43 deleterious_low_confidence(0) possibly_damaging(0.743) TCGA-22-5478-01 5 140536898 140536898 G T PCDHB17 Missense_Mutation p.R441L 0.41 tolerated_low_confidence(1) benign(0.008) TCGA-22-5478-01 5 140572941 140572941 A - PCDHB10 Frame_Shift_Del p.V273Sfs*39 0.12 TCGA-22-5478-01 5 169483700 169483700 C A DOCK2 Silent p.S1436S 0.50 TCGA-22-5478-01 5 376726 376726 C A AHRR Silent p.V86V 0.45 TCGA-22-5478-01 5 82849313 82849313 G A VCAN Silent p.L3208L 0.39 TCGA-22-5478-01 6 117246809 117246809 C A RFX6 Missense_Mutation p.N624K 0.47 tolerated_low_confidence(0.18) benign(0.04) TCGA-22-5478-01 6 28334087 28334087 G A ZKSCAN3 3'UTR 0.09 TCGA-22-5478-01 6 29407984 29407984 C A OR10C1 Silent p.T64T 0.30 TCGA-22-5478-01 6 55739738 55739738 G A BMP5 5'UTR 0.35 TCGA-22-5478-01 6 87969574 87969574 A T ZNF292 Missense_Mutation p.Q2076L 0.32 deleterious(0.03) benign(0.131) TCGA-22-5478-01 6 90354761 90354761 A G MDN1 Silent p.F5525F 0.35 TCGA-22-5478-01 6 96651407 96651407 C A FUT9 Missense_Mutation p.P126T 0.23 deleterious(0) probably_damaging(0.986) TCGA-22-5478-01 7 100389747 100389747 G T ZAN Silent p.T2562T 0.18 TCGA-22-5478-01 7 100841914 100841914 C G MOGAT3 Missense_Mutation p.M162I 0.08 deleterious(0) possibly_damaging(0.457) TCGA-22-5478-01 7 110762784 110762784 T C LRRN3 5'UTR 0.19 TCGA-22-5478-01 7 113519831 113519831 T C PPP1R3A Missense_Mutation p.D439G 0.17 deleterious(0.02) probably_damaging(1) TCGA-22-5478-01 7 119915140 119915140 G T KCND2 Missense_Mutation p.A152S 0.35 tolerated(0.62) benign(0.124) TCGA-22-5478-01 7 123508842 123508842 C - HYAL4 Frame_Shift_Del p.D173Ifs*14 0.23 TCGA-22-5478-01 7 131815122 131815122 G A PLXNA4 3'UTR 0.21 TCGA-22-5478-01 7 143657604 143657604 C A OR2F1 Missense_Mutation p.L181I 0.41 tolerated(0.48) benign(0.002) TCGA-22-5478-01 7 158536435 158536435 T C ESYT2 Intron 0.54 TCGA-22-5478-01 7 18788681 18788681 A T HDAC9 Missense_Mutation p.T655S 0.32 tolerated(1) benign(0.004) TCGA-22-5478-01 7 64838833 64838833 C G ZNF92 5'UTR 0.08 TCGA-22-5478-01 7 82763820 82763820 G A PCLO Missense_Mutation p.P1016S 0.14 unknown(0) TCGA-22-5478-01 7 93516731 93516731 C T TFPI2 Missense_Mutation p.C158Y 0.20 deleterious(0) probably_damaging(0.951) TCGA-22-5478-01 8 11420487 11420487 G A BLK Splice_Site p.X394_splice 0.25 TCGA-22-5478-01 8 12878990 12878990 G A KIAA1456 Missense_Mutation p.V268I 0.22 tolerated(0.19) benign(0.126) TCGA-22-5478-01 8 139165236 139165236 C T FAM135B Missense_Mutation p.M494I 0.45 tolerated(0.4) benign(0) TCGA-22-5478-01 8 144463805 144463805 C A RHPN1 Silent p.R518R 0.09 TCGA-22-5478-01 8 39111935 39111935 G T ADAM32 Silent p.V635V 0.20 TCGA-22-5478-01 8 41530104 41530104 C T ANK1 Missense_Mutation p.E1663K 0.13 deleterious_low_confidence(0) possibly_damaging(0.792) TCGA-22-5478-01 8 56699527 56699527 G T TGS1 Missense_Mutation p.C357F 0.38 deleterious(0) possibly_damaging(0.72) TCGA-22-5478-01 8 71553256 71553256 C G LACTB2 Missense_Mutation p.A208P 0.24 tolerated(0.36) benign(0.005) TCGA-22-5478-01 8 77766728 77766728 T G ZFHX4 Missense_Mutation p.L2524R 0.08 probably_damaging(0.974) TCGA-22-5478-01 9 100700435 100700435 C A HEMGN 5'UTR 0.39 TCGA-22-5478-01 9 135073744 135073744 G - NTNG2 Frame_Shift_Del p.A203Qfs*166 0.26 TCGA-22-5478-01 9 135785964 135785964 G - TSC1 Frame_Shift_Del p.R420Gfs*20 0.30 TCGA-22-5478-01 9 137808229 137808229 C T FCN1 Missense_Mutation p.G61E 0.36 deleterious(0) probably_damaging(1) TCGA-22-5478-01 9 74305159 74305159 T C TMEM2 Missense_Mutation p.N1234D 0.47 tolerated(0.4) benign(0.056) TCGA-22-5478-01 X 100077360 100077360 A T CSTF2 Silent p.A86A 0.72 TCGA-22-5478-01 X 110491961 110491961 G A CAPN6 Silent p.Y440Y 0.53 TCGA-22-5478-01 X 115304285 115304285 G A AGTR2 Missense_Mutation p.R251H 0.42 deleterious(0.02) probably_damaging(0.939) TCGA-22-5478-01 X 19387265 19387265 C T MAP3K15 Missense_Mutation p.G1158D 0.65 tolerated(1) benign(0.001) TCGA-22-5478-01 X 30260617 30260617 A G MAGEB4 Missense_Mutation p.Y122C 0.62 tolerated(0.11) benign(0.056) TCGA-22-5478-01 X 31089535 31089535 C G FTHL17 Missense_Mutation p.R179P 0.62 deleterious(0.01) benign(0.346) TCGA-22-5478-01 X 34148741 34148779 CGACGACTCTTGGGAAGCTCCGGGCGGAGACTGGACACT - FAM47A In_Frame_Del p.R544_L556del 0.45 TCGA-22-5478-01 X 34961384 34961384 C T FAM47B Silent p.L146L 0.55 TCGA-22-5478-01 X 73045978 73045978 G C XIST RNA 0.56 TCGA-22-5478-01 X 84363957 84363957 C A SATL1 Silent p.T6T 0.60 TCGA-22-5479-01 10 101816861 101816861 A T CPN1 Missense_Mutation p.L307Q 0.33 deleterious(0) probably_damaging(0.996) TCGA-22-5479-01 10 101816871 101816871 C G CPN1 Missense_Mutation p.E304Q 0.35 deleterious(0) probably_damaging(0.92) TCGA-22-5479-01 10 106849583 106849583 G A SORCS3 Missense_Mutation p.R360Q 0.13 tolerated(0.93) benign(0.087) TCGA-22-5479-01 10 108431020 108431020 C T SORCS1 Missense_Mutation p.V722I 0.34 tolerated(0.3) benign(0.008) TCGA-22-5479-01 10 112839074 112839074 C G ADRA2A Missense_Mutation p.I440M 0.22 deleterious(0) probably_damaging(0.965) TCGA-22-5479-01 10 13167431 13167431 G A OPTN Missense_Mutation p.E338K 0.13 deleterious(0) possibly_damaging(0.834) TCGA-22-5479-01 10 134021600 134021600 C G STK32C Missense_Mutation p.D459H 0.13 deleterious(0.01) benign(0.372) TCGA-22-5479-01 10 24889596 24889596 C G ARHGAP21 Missense_Mutation p.E1037D 0.20 tolerated(0.12) benign(0.019) TCGA-22-5479-01 10 33018292 33018292 T A C10ORF68 Missense_Mutation p.S245T 0.19 tolerated(0.63) benign(0.075) TCGA-22-5479-01 10 38260732 38260732 T - ZNF25 5'UTR 0.20 TCGA-22-5479-01 10 38654429 38654429 G T HSD17B7P2 RNA 0.27 TCGA-22-5479-01 10 68688078 68688078 C A LRRTM3 Silent p.S468S 0.26 TCGA-22-5479-01 10 7786128 7786128 T A ITIH2 Missense_Mutation p.Y765N 0.28 tolerated(0.13) possibly_damaging(0.708) TCGA-22-5479-01 10 98144423 98144423 C T TLL2 Silent p.S705S 0.13 TCGA-22-5479-01 11 103908576 103908576 C T DDI1 Silent p.I342I 0.08 TCGA-22-5479-01 11 10508912 10508912 G A AMPD3 Splice_Site p.X322_splice 0.41 TCGA-22-5479-01 11 107424630 107424630 C G ALKBH8 Missense_Mutation p.E148Q 0.07 tolerated(0.14) benign(0.303) TCGA-22-5479-01 11 117242144 117242144 G A CEP164 Missense_Mutation p.A372T 0.33 tolerated(0.09) benign(0.034) TCGA-22-5479-01 11 118917354 118917354 T G HYOU1 Missense_Mutation p.K919T 0.10 tolerated(0.19) benign(0.112) TCGA-22-5479-01 11 122929119 122929119 C A HSPA8 Missense_Mutation p.Q532H 0.16 tolerated_low_confidence(0.12) probably_damaging(0.994) TCGA-22-5479-01 11 123481011 123481011 G T GRAMD1B Silent p.T485T 0.30 TCGA-22-5479-01 11 123597372 123597372 C A ZNF202 Missense_Mutation p.C427F 0.08 deleterious(0) probably_damaging(1) TCGA-22-5479-01 11 124740611 124740611 C A ROBO3 Silent p.S340S 0.15 TCGA-22-5479-01 11 132180047 132180047 G C NTM Missense_Mutation p.V235L 0.14 tolerated(0.83) benign(0.022) TCGA-22-5479-01 11 134028280 134028280 T A NCAPD3 Silent p.A1326A 0.20 TCGA-22-5479-01 11 134188798 134188798 G A GLB1L3 Missense_Mutation p.G642S 0.13 deleterious(0.03) benign(0.411) TCGA-22-5479-01 11 36595138 36595138 A T RAG1 Missense_Mutation p.E95V 0.45 tolerated_low_confidence(0.3) benign(0.019) TCGA-22-5479-01 11 46914615 46914615 C G LRP4 Missense_Mutation p.E536Q 0.14 deleterious(0) probably_damaging(0.974) TCGA-22-5479-01 11 49598240 49598240 G T RP11-707M1.1 RNA 0.27 TCGA-22-5479-01 11 5290721 5290721 T C HBE1 Missense_Mutation p.H93R 0.18 deleterious(0.02) probably_damaging(0.995) TCGA-22-5479-01 11 5475656 5475656 G C OR51I2 Nonstop_Mutation p.*313Sext*? 0.25 TCGA-22-5479-01 11 55595173 55595173 C G OR5L2 Missense_Mutation p.S160W 0.19 deleterious(0.01) benign(0.085) TCGA-22-5479-01 11 55944796 55944796 C A OR5J2 Missense_Mutation p.Q235K 0.12 tolerated(0.13) benign(0.004) TCGA-22-5479-01 11 56230496 56230496 G C OR5M9 Missense_Mutation p.L128V 0.11 deleterious(0) probably_damaging(0.999) TCGA-22-5479-01 11 56467907 56467907 G A OR9G1 Missense_Mutation p.G15D 0.08 deleterious(0) probably_damaging(0.996) TCGA-22-5479-01 11 60075754 60075754 G C MS4A4A 3'UTR 0.62 TCGA-22-5479-01 11 62397383 62397383 G T GANAB Missense_Mutation p.S569Y 0.26 deleterious(0) probably_damaging(1) TCGA-22-5479-01 11 63071684 63071684 C T SLC22A10 Missense_Mutation p.L464F 0.10 tolerated(0.21) benign(0.05) TCGA-22-5479-01 11 6341320 6341320 G A PRKCDBP Intron 0.33 TCGA-22-5479-01 11 66329570 66329570 C T CTSF 3'Flank 0.31 TCGA-22-5479-01 11 67200123 67200123 G T RPS6KB2 Silent p.T170T 0.10 TCGA-22-5479-01 11 71804651 71804651 G C LRTOMT 5'UTR 0.15 TCGA-22-5479-01 11 76833727 76833727 G A CAPN5 Missense_Mutation p.R570H 0.29 deleterious(0) benign(0.172) TCGA-22-5479-01 11 77389176 77389176 T C RSF1 Missense_Mutation p.I1030V 0.13 deleterious(0) benign(0.238) TCGA-22-5479-01 11 82991187 82991187 G A CCDC90B Missense_Mutation p.H73Y 0.14 deleterious(0.02) possibly_damaging(0.891) TCGA-22-5479-01 11 92085984 92085984 C A FAT3 Silent p.R236R 0.32 TCGA-22-5479-01 11 92498255 92498255 G T FAT3 Missense_Mutation p.G1399W 0.30 probably_damaging(0.995) TCGA-22-5479-01 11 92534954 92534954 G C FAT3 Silent p.A2925A 0.11 TCGA-22-5479-01 11 92538347 92538347 G A FAT3 Silent p.L2975L 0.10 TCGA-22-5479-01 11 92538374 92538374 C G FAT3 Silent p.V2984V 0.13 TCGA-22-5479-01 11 93808435 93808435 C A HEPHL1 Missense_Mutation p.P534T 0.39 tolerated(0.31) possibly_damaging(0.864) TCGA-22-5479-01 12 104063329 104063329 G T STAB2 Missense_Mutation p.C728F 0.13 deleterious(0) probably_damaging(0.998) TCGA-22-5479-01 12 10532424 10532424 G C KLRK1 Intron 0.14 TCGA-22-5479-01 12 105424160 105424160 A G ALDH1L2 Missense_Mutation p.Y820H 0.13 tolerated(0.16) benign(0.017) TCGA-22-5479-01 12 109536388 109536388 G C UNG Missense_Mutation p.G95A 0.22 deleterious(0.04) benign(0.398) TCGA-22-5479-01 12 110874436 110874436 T C ARPC3 Missense_Mutation p.N102S 0.15 tolerated(0.4) benign(0) TCGA-22-5479-01 12 111772400 111772400 T G CUX2 Missense_Mutation p.Y1028D 0.18 tolerated(0.16) benign(0.004) TCGA-22-5479-01 12 113534588 113534588 G T DTX1 Silent p.T569T 0.19 TCGA-22-5479-01 12 114358452 114358452 C A RBM19 Missense_Mutation p.K783N 0.15 tolerated(0.11) benign(0.3) TCGA-22-5479-01 12 114832551 114832551 G T TBX5 Missense_Mutation p.H220N 0.19 deleterious(0.02) possibly_damaging(0.516) TCGA-22-5479-01 12 114832552 114832552 G T TBX5 Missense_Mutation p.N219K 0.19 deleterious(0.01) possibly_damaging(0.631) TCGA-22-5479-01 12 115117380 115117380 T C TBX3 Missense_Mutation p.Y265C 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-22-5479-01 12 20803446 20803446 T C PDE3A Missense_Mutation p.I946T 0.13 deleterious(0) probably_damaging(0.99) TCGA-22-5479-01 12 20833126 20833126 T C PDE3A Missense_Mutation p.I1116T 0.36 deleterious(0) benign(0.152) TCGA-22-5479-01 12 21391933 21391933 C A SLCO1B1 Missense_Mutation p.S629Y 0.34 tolerated(1) benign(0.013) TCGA-22-5479-01 12 21997794 21997794 A T ABCC9 Missense_Mutation p.L1051H 0.21 deleterious(0) probably_damaging(0.987) TCGA-22-5479-01 12 2566852 2566852 G A CACNA1C Missense_Mutation p.R246Q 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-22-5479-01 12 26835592 26835592 C G ITPR2 Missense_Mutation p.R388P 0.09 deleterious(0) probably_damaging(0.999) TCGA-22-5479-01 12 2706452 2706452 G A CACNA1C Silent p.L950L 0.07 TCGA-22-5479-01 12 280464 280464 G A IQSEC3 Intron 0.05 TCGA-22-5479-01 12 29449951 29449952 TA - FAR2 Splice_Site p.X122_splice 0.14 TCGA-22-5479-01 12 29524590 29524590 T A ERGIC2 5'UTR 0.10 TCGA-22-5479-01 12 48183696 48183696 G C HDAC7 Missense_Mutation p.T664S 0.15 tolerated(1) probably_damaging(0.951) TCGA-22-5479-01 12 48578199 48578199 C A C12orf68 Silent p.R98R 0.21 TCGA-22-5479-01 12 49360073 49360073 G T WNT10B Silent p.G325G 0.21 TCGA-22-5479-01 12 49428036 49428036 C A KMT2D Missense_Mutation p.Q3518H 0.15 probably_damaging(0.976) TCGA-22-5479-01 12 56121001 56121001 G A CD63 Silent p.F63F 0.17 TCGA-22-5479-01 12 57638720 57638720 C T STAC3 Silent p.E233E 0.10 TCGA-22-5479-01 12 57920994 57920994 C T MBD6 Missense_Mutation p.S689L 0.12 deleterious_low_confidence(0.01) unknown(0) TCGA-22-5479-01 12 58197339 58197339 C A AVIL Silent p.L595L 0.60 TCGA-22-5479-01 12 63994101 63994101 T A DPY19L2 Missense_Mutation p.L448F 0.11 tolerated(0.48) benign(0.107) TCGA-22-5479-01 12 6636200 6636200 G C NCAPD2 Missense_Mutation p.E960Q 0.08 tolerated(0.18) benign(0.04) TCGA-22-5479-01 12 70723247 70723247 C T CNOT2 Nonsense_Mutation p.Q95* 0.08 TCGA-22-5479-01 12 71960181 71960181 T C LGR5 Intron 0.26 TCGA-22-5479-01 12 7470778 7470778 C T ACSM4 Silent p.D307D 0.18 TCGA-22-5479-01 12 75893602 75893602 T G KRR1 Missense_Mutation p.K378T 0.09 deleterious_low_confidence(0.01) unknown(0) TCGA-22-5479-01 12 81762536 81762536 A T PPFIA2 Missense_Mutation p.L484I 0.13 deleterious(0) possibly_damaging(0.615) TCGA-22-5479-01 12 86373301 86373301 C T MGAT4C Silent p.R401R 0.30 TCGA-22-5479-01 12 95442847 95442847 G A NR2C1 Silent p.F376F 0.11 TCGA-22-5479-01 12 95442978 95442978 G A NR2C1 Missense_Mutation p.P333S 0.19 tolerated(0.19) possibly_damaging(0.521) TCGA-22-5479-01 12 96350520 96350520 G T AMDHD1 Missense_Mutation p.V123L 0.17 deleterious(0.01) possibly_damaging(0.648) TCGA-22-5479-01 13 101264680 101264680 T A TMTC4 Missense_Mutation p.N679I 0.41 deleterious(0) possibly_damaging(0.73) TCGA-22-5479-01 13 103698560 103698560 C G SLC10A2 Missense_Mutation p.E324Q 0.11 deleterious(0.05) benign(0.091) TCGA-22-5479-01 13 114079393 114079393 T G ADPRHL1 Missense_Mutation p.N250H 0.35 tolerated(0.17) benign(0.013) TCGA-22-5479-01 13 114765081 114765081 C T RASA3 Missense_Mutation p.E638K 0.11 tolerated(0.52) benign(0.209) TCGA-22-5479-01 13 20025342 20025342 C T TPTE2 Silent p.K255K 0.15 TCGA-22-5479-01 13 20048079 20048079 C A TPTE2 Missense_Mutation p.V123F 0.15 deleterious(0) probably_damaging(0.931) TCGA-22-5479-01 13 23929978 23929978 T C SACS Missense_Mutation p.K258R 0.27 benign(0.081) TCGA-22-5479-01 13 27333514 27333514 C T GPR12 Missense_Mutation p.E151K 0.19 tolerated(0.15) probably_damaging(0.93) TCGA-22-5479-01 13 39265327 39265327 A G FREM2 Silent p.T1282T 0.13 TCGA-22-5479-01 13 50050786 50050786 C A SETDB2 Missense_Mutation p.H172Q 0.11 deleterious(0.03) probably_damaging(0.952) TCGA-22-5479-01 13 58208867 58208867 G T PCDH17 Missense_Mutation p.K729N 0.07 deleterious(0) probably_damaging(0.985) TCGA-22-5479-01 13 67800628 67800628 C G PCDH9 Missense_Mutation p.D649H 0.10 deleterious(0) probably_damaging(1) TCGA-22-5479-01 13 67801976 67801976 C T PCDH9 Silent p.E199E 0.10 TCGA-22-5479-01 13 72063139 72063139 G A DACH1 Missense_Mutation p.T573I 0.15 possibly_damaging(0.773) TCGA-22-5479-01 13 79216303 79216303 T A RNF219 Missense_Mutation p.K85M 0.30 deleterious(0) probably_damaging(0.935) TCGA-22-5479-01 13 86370465 86370465 C A SLITRK6 Missense_Mutation p.S60I 0.10 deleterious(0.03) benign(0.001) TCGA-22-5479-01 13 99337147 99337147 G A SLC15A1 Missense_Mutation p.A653V 0.28 deleterious(0) possibly_damaging(0.906) TCGA-22-5479-01 14 100847571 100847571 C G WDR25 Missense_Mutation p.Q104E 0.27 tolerated(1) benign(0) TCGA-22-5479-01 14 105615275 105615275 C G JAG2 Missense_Mutation p.E635D 0.25 deleterious(0.01) probably_damaging(0.996) TCGA-22-5479-01 14 105615570 105615570 C T JAG2 Missense_Mutation p.D564N 0.30 tolerated(0.05) benign(0.388) TCGA-22-5479-01 14 106066320 106066320 T A IGHE 3'UTR 0.11 TCGA-22-5479-01 14 106757757 106757757 G T IGHV2-26 Missense_Mutation p.L84M 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-22-5479-01 14 107083675 107083675 A G IGHV4-59 Missense_Mutation p.L4P 0.15 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-22-5479-01 14 20502707 20502707 T C OR4K13 Missense_Mutation p.M71V 0.22 tolerated(0.25) benign(0.024) TCGA-22-5479-01 14 22111136 22111136 A G TRAV1-2 5'UTR 0.18 TCGA-22-5479-01 14 22133517 22133517 C G OR4E2 Nonsense_Mutation p.S74* 0.14 TCGA-22-5479-01 14 22573928 22573928 A G TRAV24 Missense_Mutation p.S50G 0.43 deleterious(0.01) benign(0.395) TCGA-22-5479-01 14 23862995 23862995 C T MYH6 Silent p.A936A 0.14 TCGA-22-5479-01 14 24800288 24800288 C T ADCY4 Missense_Mutation p.C289Y 0.15 deleterious(0) probably_damaging(1) TCGA-22-5479-01 14 31849688 31849688 C T HEATR5A Missense_Mutation p.A272T 0.33 deleterious(0) benign(0.015) TCGA-22-5479-01 14 33684435 33684435 G A NPAS3 Missense_Mutation p.R63H 0.12 deleterious(0) possibly_damaging(0.522) TCGA-22-5479-01 14 44975763 44975763 A G FSCB Missense_Mutation p.M143T 0.26 deleterious(0.04) possibly_damaging(0.896) TCGA-22-5479-01 14 45475260 45475260 G A FAM179B Silent p.V898V 0.17 TCGA-22-5479-01 14 45521649 45521649 C T FAM179B Nonsense_Mutation p.R1389* 0.09 TCGA-22-5479-01 14 47120453 47120453 G C RPL10L Missense_Mutation p.Q163E 0.12 deleterious(0) probably_damaging(0.975) TCGA-22-5479-01 14 50100181 50100181 C A DNAAF2 Missense_Mutation p.A563S 0.20 tolerated(0.15) benign(0.004) TCGA-22-5479-01 14 50802855 50802855 T C CDKL1 Intron 0.31 TCGA-22-5479-01 14 51561090 51561090 A G TRIM9 Missense_Mutation p.C190R 0.16 deleterious(0) probably_damaging(0.992) TCGA-22-5479-01 14 58915104 58915104 T A KIAA0586 Missense_Mutation p.V338D 0.27 tolerated(0.07) possibly_damaging(0.848) TCGA-22-5479-01 14 60212914 60212914 G T RTN1 Missense_Mutation p.T176K 0.13 tolerated(0.06) benign(0.131) TCGA-22-5479-01 14 68050814 68050814 C T PLEKHH1 Silent p.F1224F 0.23 TCGA-22-5479-01 14 70635002 70635002 C A SLC8A3 Missense_Mutation p.E46D 0.12 tolerated(0.57) benign(0.001) TCGA-22-5479-01 14 72936738 72936738 G A RGS6 Silent p.R161R 0.14 TCGA-22-5479-01 14 77332342 77332342 T C C14orf166B Missense_Mutation p.V428A 0.14 tolerated(0.11) benign(0.017) TCGA-22-5479-01 14 93760549 93760549 C G BTBD7 Missense_Mutation p.E273Q 0.16 tolerated(0.07) benign(0.235) TCGA-22-5479-01 14 93813656 93813656 C T COX8C Silent p.Y14Y 0.16 TCGA-22-5479-01 14 95234964 95234964 G C GSC Missense_Mutation p.A213G 0.23 deleterious(0.01) probably_damaging(0.991) TCGA-22-5479-01 15 22369084 22369084 G T OR4M2 Missense_Mutation p.G170V 0.25 deleterious(0) probably_damaging(0.97) TCGA-22-5479-01 15 25490566 25490566 G A SNORD115-40 3'Flank 0.12 TCGA-22-5479-01 15 25961963 25961963 C A ATP10A Nonsense_Mutation p.E564* 0.13 TCGA-22-5479-01 15 33936605 33936605 G C RYR3 Missense_Mutation p.G1217A 0.09 probably_damaging(0.999) TCGA-22-5479-01 15 41483693 41483693 G A EXD1 Nonsense_Mutation p.Q213* 0.13 TCGA-22-5479-01 15 43067433 43067433 T C TTBK2 Missense_Mutation p.Y633C 0.18 tolerated_low_confidence(0.16) benign(0.001) TCGA-22-5479-01 15 43622549 43622549 G T LCMT2 Missense_Mutation p.R47S 0.29 deleterious(0) probably_damaging(0.999) TCGA-22-5479-01 15 48539199 48539199 C A SLC12A1 Missense_Mutation p.P516T 0.28 deleterious(0) probably_damaging(1) TCGA-22-5479-01 15 48539200 48539200 C T SLC12A1 Missense_Mutation p.P516L 0.28 deleterious(0) probably_damaging(1) TCGA-22-5479-01 15 50544932 50544932 T C HDC Missense_Mutation p.Y276C 0.18 deleterious(0) probably_damaging(1) TCGA-22-5479-01 15 55497751 55497751 G A RAB27A Missense_Mutation p.T207M 0.11 tolerated(0.11) benign(0.097) TCGA-22-5479-01 15 55783446 55783446 C G DYX1C1 Missense_Mutation p.E94Q 0.22 deleterious(0.04) benign(0.252) TCGA-22-5479-01 15 63966876 63966876 C G HERC1 Missense_Mutation p.R2504T 0.15 benign(0.035) TCGA-22-5479-01 15 65890678 65890678 G A VWA9 Silent p.I186I 0.18 TCGA-22-5479-01 15 66607414 66607414 A - DIS3L Frame_Shift_Del p.N286Tfs*9 0.16 TCGA-22-5479-01 15 74336566 74336566 G T PML Missense_Mutation p.Q622H 0.22 deleterious(0.05) probably_damaging(0.987) TCGA-22-5479-01 15 77763338 77763338 C G HMG20A Missense_Mutation p.F179L 0.17 tolerated(0.14) possibly_damaging(0.546) TCGA-22-5479-01 15 89865023 89865023 C T POLG Missense_Mutation p.G848S 0.17 deleterious(0) probably_damaging(1) TCGA-22-5479-01 16 20435294 20435294 G T ACSM5 Missense_Mutation p.W275L 0.11 deleterious(0) probably_damaging(0.996) TCGA-22-5479-01 16 2259473 2259473 C T BRICD5 Intron 0.18 TCGA-22-5479-01 16 30018562 30018562 C T DOC2A Missense_Mutation p.V196M 0.17 deleterious(0.03) benign(0.288) TCGA-22-5479-01 16 31212907 31212907 C T PYCARD Silent p.%3D 0.10 TCGA-22-5479-01 16 319612 319612 C T ITFG3 3'UTR 0.26 TCGA-22-5479-01 16 46766523 46766523 C T MYLK3 Silent p.R353R 0.20 TCGA-22-5479-01 16 47162318 47162318 T C NETO2 Silent p.T133T 0.14 TCGA-22-5479-01 16 4797524 4797524 C A C16orf71 Missense_Mutation p.S487R 0.18 tolerated(0.05) benign(0.331) TCGA-22-5479-01 16 49433251 49433251 C T C16orf78 3'UTR 0.24 TCGA-22-5479-01 16 56403227 56403227 G C AMFR Missense_Mutation p.Q465E 0.12 deleterious(0.02) benign(0.285) TCGA-22-5479-01 16 57290771 57290771 G T PLLP 3'UTR 0.19 TCGA-22-5479-01 16 67576637 67576637 C T FAM65A Silent p.L670L 0.29 TCGA-22-5479-01 16 67709667 67709667 C A GFOD2 Silent p.V183V 0.14 TCGA-22-5479-01 16 74950061 74950061 C A WDR59 Missense_Mutation p.D355Y 0.15 deleterious(0.01) benign(0.11) TCGA-22-5479-01 16 75269530 75269530 C G BCAR1 Missense_Mutation p.E469Q 0.16 deleterious(0.04) benign(0.171) TCGA-22-5479-01 16 84691032 84691032 G C KLHL36 Missense_Mutation p.E207Q 0.22 deleterious(0) probably_damaging(0.993) TCGA-22-5479-01 16 9934574 9934574 G T GRIN2A Silent p.P527P 0.14 TCGA-22-5479-01 17 10359847 10359847 G T MYH4 Silent p.G641G 0.22 TCGA-22-5479-01 17 16455978 16455978 G A ZNF287 Missense_Mutation p.S493L 0.22 deleterious(0.01) benign(0.185) TCGA-22-5479-01 17 18814428 18814428 T G PRPSAP2 Missense_Mutation p.F199L 0.28 tolerated(0.32) benign(0) TCGA-22-5479-01 17 26939299 26939299 G A SGK494 Silent p.A211A 0.12 TCGA-22-5479-01 17 27051894 27051894 G A TLCD1 Silent p.F126F 0.20 TCGA-22-5479-01 17 30200475 30200475 G A UTP6 Missense_Mutation p.S473L 0.30 deleterious(0) possibly_damaging(0.855) TCGA-22-5479-01 17 3119777 3119777 A G OR1A1 Missense_Mutation p.Y288C 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-22-5479-01 17 32904585 32904585 C T C17orf102 Silent p.R155R 0.12 TCGA-22-5479-01 17 35798051 35798051 G A TADA2A Intron 0.25 TCGA-22-5479-01 17 39596999 39596999 A T KRT38 Missense_Mutation p.S59T 0.17 tolerated(0.49) benign(0.003) TCGA-22-5479-01 17 39766252 39766252 G A KRT16 Missense_Mutation p.R453C 0.21 deleterious(0.02) possibly_damaging(0.483) TCGA-22-5479-01 17 40255783 40255783 G T DHX58 Silent p.R533R 0.29 TCGA-22-5479-01 17 42393807 42393807 C G RUNDC3A Silent p.L336L 0.11 TCGA-22-5479-01 17 42635541 42635541 C T FZD2 Missense_Mutation p.A162V 0.36 tolerated(0.26) benign(0.002) TCGA-22-5479-01 17 64179321 64179321 G C CEP112 Missense_Mutation p.H33D 0.10 deleterious(0.04) probably_damaging(0.997) TCGA-22-5479-01 17 66917594 66917594 A G ABCA8 Missense_Mutation p.I514T 0.32 deleterious(0) possibly_damaging(0.603) TCGA-22-5479-01 17 68171775 68171775 G T KCNJ2 Missense_Mutation p.A199S 0.11 deleterious(0.02) probably_damaging(1) TCGA-22-5479-01 17 72356295 72356295 G T BTBD17 Missense_Mutation p.Q59K 0.28 tolerated(0.67) benign(0.005) TCGA-22-5479-01 17 7578474 7578475 - A TP53 Frame_Shift_Ins p.P153Afs*28 0.31 TCGA-22-5479-01 17 76210395 76210395 G T BIRC5 5'UTR 0.36 TCGA-22-5479-01 17 79430675 79430675 C T RP11-1055B8.7 Silent p.D2553D 0.23 TCGA-22-5479-01 18 28986311 28986311 G A DSG4 Missense_Mutation p.M636I 0.31 tolerated(1) benign(0.003) TCGA-22-5479-01 18 32409083 32409083 G C DTNA Intron 0.14 TCGA-22-5479-01 18 50866178 50866178 G A DCC Missense_Mutation p.V754M 0.29 tolerated(0.39) possibly_damaging(0.654) TCGA-22-5479-01 18 50912459 50912459 C T DCC Silent p.A802A 0.10 TCGA-22-5479-01 18 5416163 5416163 C T EPB41L3 Missense_Mutation p.S574N 0.12 tolerated(0.11) benign(0.005) TCGA-22-5479-01 18 57567413 57567413 C T PMAIP1 Missense_Mutation p.P2S 0.31 deleterious(0.01) benign(0.003) TCGA-22-5479-01 18 61305107 61305107 C A SERPINB4 Missense_Mutation p.G340V 0.23 deleterious(0) probably_damaging(1) TCGA-22-5479-01 18 64239356 64239356 T A CDH19 Missense_Mutation p.K29M 0.14 deleterious(0.02) benign(0.26) TCGA-22-5479-01 18 70461463 70461463 C A NETO1 Missense_Mutation p.M176I 0.18 tolerated(0.37) benign(0.388) TCGA-22-5479-01 18 7050881 7050881 T A LAMA1 Missense_Mutation p.N134Y 0.25 deleterious(0) probably_damaging(1) TCGA-22-5479-01 18 74091201 74091201 G C ZNF516 Missense_Mutation p.P957A 0.06 tolerated(1) benign(0.001) TCGA-22-5479-01 18 9204543 9204543 G A ANKRD12 Splice_Site p.X102_splice 0.10 TCGA-22-5479-01 18 9257126 9257126 G A ANKRD12 Silent p.R1287R 0.22 TCGA-22-5479-01 19 12817035 12817035 G A TNPO2 Missense_Mutation p.S548F 0.18 deleterious(0) possibly_damaging(0.907) TCGA-22-5479-01 19 16870117 16870117 C T NWD1 Silent p.T617T 0.22 TCGA-22-5479-01 19 17918840 17918840 C T B3GNT3 Missense_Mutation p.T75M 0.18 tolerated(0.06) benign(0.136) TCGA-22-5479-01 19 18272844 18272844 A T PIK3R2 Missense_Mutation p.Q295L 0.17 tolerated(0.34) benign(0.034) TCGA-22-5479-01 19 20736522 20736522 G A ZNF737 Silent p.V41V 0.13 TCGA-22-5479-01 19 21366725 21366725 A G ZNF431 Missense_Mutation p.Y540C 0.41 deleterious(0.03) benign(0.015) TCGA-22-5479-01 19 22155857 22155857 G T ZNF208 Missense_Mutation p.A660D 0.20 deleterious(0) benign(0.011) TCGA-22-5479-01 19 22155928 22155928 G T ZNF208 Silent p.P636P 0.19 TCGA-22-5479-01 19 22272045 22272045 G A ZNF257 Missense_Mutation p.R498Q 0.30 tolerated(0.83) benign(0.009) TCGA-22-5479-01 19 22574358 22574358 T C ZNF98 Missense_Mutation p.K560R 0.32 tolerated(0.26) benign(0) TCGA-22-5479-01 19 22574445 22574445 G A ZNF98 Missense_Mutation p.S531F 0.42 deleterious(0) benign(0.169) TCGA-22-5479-01 19 2278616 2278616 C A C19orf35 Silent p.A193A 0.31 TCGA-22-5479-01 19 24310811 24310811 C T ZNF254 3'UTR 0.16 TCGA-22-5479-01 19 30935807 30935807 G C ZNF536 Silent p.L446L 0.12 TCGA-22-5479-01 19 36051336 36051336 G A ATP4A Missense_Mutation p.S239L 0.15 deleterious(0.01) benign(0.228) TCGA-22-5479-01 19 37368492 37368492 G T ZNF345 Missense_Mutation p.G254C 0.29 deleterious(0) probably_damaging(1) TCGA-22-5479-01 19 38817496 38817496 G A KCNK6 Missense_Mutation p.E196K 0.20 deleterious(0) probably_damaging(1) TCGA-22-5479-01 19 39369677 39369677 G C SIRT2 3'UTR 0.38 TCGA-22-5479-01 19 39914927 39914927 A G PLEKHG2 Missense_Mutation p.N1052D 0.34 tolerated_low_confidence(0.09) benign(0.003) TCGA-22-5479-01 19 39924214 39924214 G A RPS16 Intron 0.21 TCGA-22-5479-01 19 40895564 40895564 G A HIPK4 Silent p.A82A 0.16 TCGA-22-5479-01 19 41599549 41599549 C T CYP2A13 Silent p.P282P 0.15 TCGA-22-5479-01 19 41928643 41928643 C T BCKDHA Silent p.N321N 0.09 TCGA-22-5479-01 19 43243207 43243207 A T PSG3 Silent p.T33T 0.19 TCGA-22-5479-01 19 43439662 43439662 C T PSG7 Silent p.L108L 0.13 TCGA-22-5479-01 19 46173910 46173910 G C GIPR Missense_Mutation p.Q30H 0.10 deleterious(0) benign(0.011) TCGA-22-5479-01 19 47918045 47918045 C T MEIS3 Missense_Mutation p.E176K 0.17 deleterious(0.01) benign(0.256) TCGA-22-5479-01 19 50017734 50017734 G C FCGRT Missense_Mutation p.E198Q 0.23 tolerated(1) possibly_damaging(0.551) TCGA-22-5479-01 19 50093654 50093654 C G PRRG2 3'UTR 0.16 TCGA-22-5479-01 19 50360988 50360988 G C PTOV1 Missense_Mutation p.Q251H 0.14 deleterious(0.01) possibly_damaging(0.477) TCGA-22-5479-01 19 51503680 51503680 G C KLK8 Missense_Mutation p.P122R 0.19 tolerated(0.42) benign(0.01) TCGA-22-5479-01 19 52149605 52149605 C G SIGLEC14 Missense_Mutation p.R109T 0.27 deleterious(0) possibly_damaging(0.84) TCGA-22-5479-01 19 52568420 52568420 T A ZNF841 Silent p.T905T 0.29 TCGA-22-5479-01 19 54203351 54203351 T C MIR518F RNA 0.21 TCGA-22-5479-01 19 54544316 54544316 C G VSTM1 Missense_Mutation p.V204L 0.42 tolerated(0.07) benign(0.064) TCGA-22-5479-01 19 54657565 54657565 C G CNOT3 Missense_Mutation p.D717E 0.06 tolerated(0.07) possibly_damaging(0.841) TCGA-22-5479-01 19 55644230 55644230 G T TNNT1 3'UTR 0.44 TCGA-22-5479-01 19 57723420 57723420 G A ZNF264 Missense_Mutation p.E319K 0.08 deleterious(0) probably_damaging(0.995) TCGA-22-5479-01 19 58049353 58049353 T C ZNF549 Silent p.N327N 0.16 TCGA-22-5479-01 19 9063911 9063911 G T MUC16 Silent p.G7845G 0.25 TCGA-22-5479-01 19 9325344 9325344 G T OR7D4 Missense_Mutation p.T57N 0.09 deleterious(0.03) benign(0.029) TCGA-22-5479-01 19 9524212 9524212 T G ZNF266 Silent p.P463P 0.16 TCGA-22-5479-01 19 9578352 9578352 C T ZNF560 Missense_Mutation p.R424K 0.15 tolerated(0.25) benign(0.019) TCGA-22-5479-01 1 101194849 101194849 C T VCAM1 Missense_Mutation p.P372L 0.22 deleterious(0.01) possibly_damaging(0.893) TCGA-22-5479-01 1 102290629 102290629 C G OLFM3 Missense_Mutation p.R182T 0.13 deleterious(0) benign(0.205) TCGA-22-5479-01 1 104112867 104112867 C T AMY2B Intron 0.21 TCGA-22-5479-01 1 104117929 104117929 G T AMY2B Silent p.G321G 0.17 TCGA-22-5479-01 1 104297217 104297217 C G AMY1C Silent p.A325A 0.11 TCGA-22-5479-01 1 109893577 109893577 G A SORT1 Silent p.I252I 0.15 TCGA-22-5479-01 1 110255335 110255335 C T GSTM5 Intron 0.20 TCGA-22-5479-01 1 117146592 117146592 C T IGSF3 Silent p.E446E 0.15 TCGA-22-5479-01 1 11867228 11867228 T C CLCN6 Missense_Mutation p.L43P 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-22-5479-01 1 11898680 11898680 G A CLCN6 Missense_Mutation p.G831D 0.15 deleterious(0) probably_damaging(1) TCGA-22-5479-01 1 12017040 12017040 C T PLOD1 Missense_Mutation p.P237L 0.15 deleterious(0.01) possibly_damaging(0.621) TCGA-22-5479-01 1 12202481 12202481 C T TNFRSF8 Missense_Mutation p.P561S 0.14 deleterious(0) probably_damaging(0.999) TCGA-22-5479-01 1 12371955 12371955 G C VPS13D Missense_Mutation p.R2303T 0.23 benign(0) TCGA-22-5479-01 1 12567101 12567101 C T VPS13D Missense_Mutation p.T4330M 0.14 possibly_damaging(0.537) TCGA-22-5479-01 1 12919545 12919545 C T PRAMEF2 Intron 0.14 TCGA-22-5479-01 1 13036638 13036638 G A PRAMEF22 Missense_Mutation p.R237H 0.06 tolerated(0.2) benign(0.008) TCGA-22-5479-01 1 144921858 144921858 C T PDE4DIP Missense_Mutation p.E391K 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-22-5479-01 1 145112447 145112447 G A SEC22B RNA 0.04 TCGA-22-5479-01 1 150337369 150337369 A G RPRD2 Missense_Mutation p.Y60C 0.20 tolerated_low_confidence(0.16) benign(0.001) TCGA-22-5479-01 1 150689669 150689669 G A HORMAD1 Silent p.I41I 0.05 TCGA-22-5479-01 1 152188096 152188096 G A HRNR Silent p.Y2003Y 0.14 TCGA-22-5479-01 1 153004890 153004890 G A SPRR1B Silent p.Q23Q 0.08 TCGA-22-5479-01 1 153520821 153520821 C T S100A3 Silent p.P47P 0.03 TCGA-22-5479-01 1 154142904 154142904 C G TPM3 Missense_Mutation p.K249N 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-22-5479-01 1 158227575 158227575 G A CD1A 3'UTR 0.13 TCGA-22-5479-01 1 158389895 158389895 A C OR10K2 Missense_Mutation p.C254W 0.42 deleterious(0) probably_damaging(1) TCGA-22-5479-01 1 158817635 158817635 C A MNDA Missense_Mutation p.L369I 0.45 deleterious(0.01) probably_damaging(0.994) TCGA-22-5479-01 1 159922143 159922143 C A SLAMF9 Silent p.P191P 0.40 TCGA-22-5479-01 1 160320014 160320014 G A NCSTN Missense_Mutation p.E186K 0.06 tolerated(0.5) benign(0.027) TCGA-22-5479-01 1 160466142 160466142 T C SLAMF6 Missense_Mutation p.N31D 0.16 tolerated(0.12) possibly_damaging(0.651) TCGA-22-5479-01 1 161029445 161029445 G T ARHGAP30 Silent p.I53I 0.08 TCGA-22-5479-01 1 166891875 166891875 G C ILDR2 Nonsense_Mutation p.S389* 0.12 TCGA-22-5479-01 1 167096251 167096251 A T DUSP27 Missense_Mutation p.E628V 0.33 deleterious(0) probably_damaging(0.999) TCGA-22-5479-01 1 171605497 171605497 A G MYOC Silent p.P361P 0.42 TCGA-22-5479-01 1 176992636 176992636 G C ASTN1 Missense_Mutation p.L448V 0.06 deleterious(0.01) probably_damaging(0.957) TCGA-22-5479-01 1 186321231 186321231 T C TPR Silent p.E782E 0.23 TCGA-22-5479-01 1 198668729 198668729 A T PTPRC Missense_Mutation p.H112L 0.16 deleterious(0.02) benign(0.33) TCGA-22-5479-01 1 205034312 205034312 C T CNTN2 Silent p.D539D 0.04 TCGA-22-5479-01 1 21050165 21050165 C T SH2D5 Missense_Mutation p.E288K 0.28 deleterious(0) benign(0.152) TCGA-22-5479-01 1 222696957 222696957 C T HHIPL2 Missense_Mutation p.A629T 0.12 tolerated(0.23) benign(0.037) TCGA-22-5479-01 1 223438139 223438139 G A SUSD4 Missense_Mutation p.S186F 0.11 tolerated(0.32) probably_damaging(0.973) TCGA-22-5479-01 1 232607186 232607186 C T SIPA1L2 Missense_Mutation p.R725Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-22-5479-01 1 233386541 233386541 C T PCNXL2 Silent p.Q722Q 0.22 TCGA-22-5479-01 1 23408716 23408716 A G KDM1A Missense_Mutation p.K768E 0.20 tolerated(0.06) possibly_damaging(0.512) TCGA-22-5479-01 1 235922815 235922815 G A LYST Missense_Mutation p.S2113L 0.05 tolerated_low_confidence(0.18) benign(0.34) TCGA-22-5479-01 1 237024544 237024544 T C MTR Silent p.D721D 0.06 TCGA-22-5479-01 1 237886491 237886491 G A RYR2 Missense_Mutation p.D3540N 0.12 benign(0.12) TCGA-22-5479-01 1 240370862 240370862 G A FMN2 Missense_Mutation p.G917E 0.12 unknown(0) TCGA-22-5479-01 1 247614961 247614961 G T OR2B11 Missense_Mutation p.F108L 0.11 deleterious(0.03) probably_damaging(0.952) TCGA-22-5479-01 1 247694821 247694821 G T OR2C3 3'UTR 0.26 TCGA-22-5479-01 1 247978312 247978312 A T OR14A16 Silent p.L240L 0.45 TCGA-22-5479-01 1 247978778 247978778 A G OR14A16 Missense_Mutation p.I85T 0.15 tolerated(1) benign(0.001) TCGA-22-5479-01 1 248039760 248039760 C T TRIM58 Missense_Mutation p.P477L 0.41 tolerated_low_confidence(0.18) benign(0.001) TCGA-22-5479-01 1 248113050 248113050 G A OR2L8 Missense_Mutation p.M297I 0.22 tolerated(0.12) benign(0.004) TCGA-22-5479-01 1 248551254 248551254 G T OR2T6 Silent p.L115L 0.45 TCGA-22-5479-01 1 248636900 248636900 G T OR2T3 Silent p.V83V 0.32 TCGA-22-5479-01 1 248756948 248756948 C A OR2T10 Missense_Mutation p.W41L 0.42 deleterious(0.01) benign(0.001) TCGA-22-5479-01 1 248790203 248790203 G A OR2T11 Missense_Mutation p.P76L 0.38 deleterious(0) probably_damaging(0.998) TCGA-22-5479-01 1 249211308 249211308 G T PGBD2 Silent p.T175T 0.16 TCGA-22-5479-01 1 27226918 27226918 C T GPATCH3 Missense_Mutation p.E6K 0.10 tolerated_low_confidence(0.11) benign(0.078) TCGA-22-5479-01 1 45809219 45809219 C A TOE1 Missense_Mutation p.P460T 0.10 tolerated(0.52) benign(0.001) TCGA-22-5479-01 1 45810610 45810610 C T TESK2 Missense_Mutation p.E540K 0.26 tolerated_low_confidence(0.09) benign(0.011) TCGA-22-5479-01 1 46660613 46660613 G T POMGNT1 Silent p.L185L 0.18 TCGA-22-5479-01 1 68897191 68897191 C A RPE65 Missense_Mutation p.W402C 0.22 deleterious(0) probably_damaging(0.981) TCGA-22-5479-01 1 77094303 77094303 A T ST6GALNAC3 Splice_Site p.X244_splice 0.15 TCGA-22-5479-01 1 86341009 86341009 G C COL24A1 Missense_Mutation p.P1012R 0.24 deleterious(0.01) possibly_damaging(0.534) TCGA-22-5479-01 1 86515845 86515845 G T COL24A1 Missense_Mutation p.P623T 0.20 deleterious(0) probably_damaging(0.981) TCGA-22-5479-01 20 259963 259963 G A C20orf96 Silent p.L105L 0.44 TCGA-22-5479-01 20 30432396 30432396 G A FOXS1 Missense_Mutation p.T317I 0.16 deleterious(0) benign(0.446) TCGA-22-5479-01 20 3102115 3102115 C G UBOX5 Missense_Mutation p.L390F 0.13 tolerated(0.33) benign(0.005) TCGA-22-5479-01 20 34022448 34022448 G A GDF5 Silent p.P255P 0.17 TCGA-22-5479-01 20 35444625 35444625 T A SOGA1 Missense_Mutation p.K407M 0.35 deleterious(0) probably_damaging(0.998) TCGA-22-5479-01 20 467060 467060 T A CSNK2A1 Silent p.P340P 0.08 TCGA-22-5479-01 20 53092545 53092545 C T DOK5 Silent p.R20R 0.14 TCGA-22-5479-01 20 60737898 60737898 G A SS18L1 Missense_Mutation p.G156E 0.17 tolerated_low_confidence(0.27) possibly_damaging(0.71) TCGA-22-5479-01 20 62595177 62595177 C T ZNF512B Missense_Mutation p.V524M 0.14 tolerated(0.21) benign(0.029) TCGA-22-5479-01 21 11039387 11039387 C G BAGE2 RNA 0.04 TCGA-22-5479-01 21 32410572 32410572 C T KRTAP19-8 Silent p.%3D 0.13 TCGA-22-5479-01 21 37650532 37650532 G A DOPEY2 Missense_Mutation p.A1950T 0.16 deleterious(0) probably_damaging(1) TCGA-22-5479-01 21 40717188 40717188 C G HMGN1 Missense_Mutation p.D47H 0.20 deleterious(0.01) possibly_damaging(0.88) TCGA-22-5479-01 21 43277377 43277377 C T PRDM15 Missense_Mutation p.A431T 0.19 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-22-5479-01 22 32614692 32614692 C T SLC5A4 Missense_Mutation p.G597R 0.13 deleterious(0.04) probably_damaging(0.966) TCGA-22-5479-01 22 33265055 33265055 C A SYN3 Silent p.L173L 0.16 TCGA-22-5479-01 22 38122399 38122399 C G TRIOBP Missense_Mutation p.P1279R 0.30 deleterious_low_confidence(0.04) benign(0.01) TCGA-22-5479-01 22 38323469 38323469 C T MICALL1 Missense_Mutation p.S506L 0.23 deleterious(0.04) probably_damaging(0.997) TCGA-22-5479-01 22 39708938 39708938 C T RPL3 3'UTR 0.05 TCGA-22-5479-01 2 10567042 10567042 C G HPCAL1 3'UTR 0.33 TCGA-22-5479-01 2 105924453 105924453 G A TGFBRAP1 Silent p.V102V 0.16 TCGA-22-5479-01 2 108627026 108627026 G A SLC5A7 Missense_Mutation p.M484I 0.14 deleterious(0.01) probably_damaging(0.945) TCGA-22-5479-01 2 109102104 109102104 C T GCC2 Missense_Mutation p.S1209F 0.08 deleterious(0) benign(0.241) TCGA-22-5479-01 2 116257123 116257123 C T DPP10 Silent p.V107V 0.17 TCGA-22-5479-01 2 120643405 120643405 C G PTPN4 Missense_Mutation p.L208V 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-22-5479-01 2 128366282 128366282 G - MYO7B Splice_Site p.X882_splice 0.22 TCGA-22-5479-01 2 139429010 139429010 G T NXPH2 Missense_Mutation p.P93T 0.40 tolerated(0.12) benign(0.023) TCGA-22-5479-01 2 141259436 141259436 T C LRP1B Silent p.S2890S 0.14 TCGA-22-5479-01 2 150325211 150325211 C T LYPD6 Silent p.I90I 0.14 TCGA-22-5479-01 2 155555387 155555387 C T KCNJ3 Nonsense_Mutation p.Q34* 0.16 TCGA-22-5479-01 2 158958616 158958616 C G UPP2 Missense_Mutation p.S71C 0.10 deleterious_low_confidence(0.03) possibly_damaging(0.788) TCGA-22-5479-01 2 163133355 163133355 C A IFIH1 Nonsense_Mutation p.E716* 0.09 TCGA-22-5479-01 2 163302867 163302867 A C KCNH7 Silent p.P405P 0.17 TCGA-22-5479-01 2 167760394 167760394 T A XIRP2 Silent p.G134G 0.44 TCGA-22-5479-01 2 168108123 168108123 G T XIRP2 Missense_Mutation p.R3407S 0.13 benign(0.006) TCGA-22-5479-01 2 168726091 168726091 T C B3GALT1 Missense_Mutation p.F181S 0.25 deleterious(0) probably_damaging(0.989) TCGA-22-5479-01 2 169989134 169989134 C G LRP2 Missense_Mutation p.E4560Q 0.18 benign(0.022) TCGA-22-5479-01 2 170097776 170097776 C A LRP2 Missense_Mutation p.C1256F 0.09 probably_damaging(1) TCGA-22-5479-01 2 178098944 178098944 C G NFE2L2 Missense_Mutation p.R34P 0.34 deleterious(0) probably_damaging(1) TCGA-22-5479-01 2 179320801 179320801 G A DFNB59 Missense_Mutation p.V158M 0.40 deleterious(0.03) probably_damaging(0.916) TCGA-22-5479-01 2 179396989 179396989 C T TTN Missense_Mutation p.E34785K 0.16 TCGA-22-5479-01 2 179427537 179427537 G A TTN Silent p.T27774T 0.24 TCGA-22-5479-01 2 179427538 179427538 G T TTN Missense_Mutation p.T27774N 0.24 TCGA-22-5479-01 2 179479512 179479512 C G TTN Intron 0.26 TCGA-22-5479-01 2 179577929 179577929 C T TTN Missense_Mutation p.D8978N 0.11 TCGA-22-5479-01 2 179612780 179612780 C G TTN Intron 0.08 TCGA-22-5479-01 2 179666956 179666956 G C TTN Silent p.P68P 0.41 TCGA-22-5479-01 2 197122629 197122629 C G HECW2 Missense_Mutation p.E1113Q 0.12 deleterious(0.01) probably_damaging(0.948) TCGA-22-5479-01 2 201407315 201407315 C T SGOL2 Missense_Mutation p.S134F 0.28 deleterious(0.02) probably_damaging(0.957) TCGA-22-5479-01 2 204031991 204031991 G C NBEAL1 Missense_Mutation p.E1940Q 0.15 deleterious(0) probably_damaging(0.985) TCGA-22-5479-01 2 206037072 206037072 G C PARD3B Missense_Mutation p.L524F 0.11 deleterious(0) probably_damaging(0.998) TCGA-22-5479-01 2 206587245 206587245 C T NRP2 Silent p.T159T 0.19 TCGA-22-5479-01 2 211163182 211163182 G T MYL1 Missense_Mutation p.A89E 0.20 tolerated(0.06) possibly_damaging(0.538) TCGA-22-5479-01 2 212248283 212248283 G A ERBB4 3'UTR 0.16 TCGA-22-5479-01 2 216992397 216992397 G A XRCC5 Missense_Mutation p.G313R 0.18 deleterious(0) probably_damaging(1) TCGA-22-5479-01 2 227920753 227920753 G A COL4A4 Missense_Mutation p.P875L 0.22 unknown(0) TCGA-22-5479-01 2 228881923 228881923 C T SPHKAP Missense_Mutation p.S1216N 0.22 deleterious(0) probably_damaging(0.978) TCGA-22-5479-01 2 230875492 230875492 G A FBXO36 Silent p.A153A 0.23 TCGA-22-5479-01 2 234240284 234240284 A G SAG Splice_Site p.X245_splice 0.25 TCGA-22-5479-01 2 239975226 239975226 C A HDAC4 Nonsense_Mutation p.E1049* 0.15 TCGA-22-5479-01 2 242077502 242077502 C G PASK Missense_Mutation p.G248R 0.30 deleterious(0) probably_damaging(1) TCGA-22-5479-01 2 26864198 26864198 C G CIB4 5'UTR 0.12 TCGA-22-5479-01 2 38975764 38975783 CTCTGGATCGAGAATGTGAT - SRSF7 Frame_Shift_Del p.S134Kfs*30 0.34 TCGA-22-5479-01 2 40655896 40655896 T A SLC8A1 Missense_Mutation p.I509L 0.34 tolerated(0.57) benign(0) TCGA-22-5479-01 2 51254851 51254851 C T NRXN1 Silent p.V187V 0.47 TCGA-22-5479-01 2 73677943 73677943 C G ALMS1 Nonsense_Mutation p.S1429* 0.35 TCGA-22-5479-01 2 79253841 79253841 G A REG3G Missense_Mutation p.E27K 0.25 tolerated(0.06) benign(0.259) TCGA-22-5479-01 2 84811141 84811141 G T DNAH6 Nonsense_Mutation p.E750* 0.15 TCGA-22-5479-01 2 85662606 85662606 T A SH2D6 Missense_Mutation p.L80H 0.23 tolerated(0.13) probably_damaging(0.995) TCGA-22-5479-01 2 85662607 85662607 C A SH2D6 Silent p.L80L 0.24 TCGA-22-5479-01 2 85781378 85781378 C T GGCX Silent p.G259G 0.11 TCGA-22-5479-01 2 90199102 90199102 G C IGKV1D-12 Missense_Mutation p.G88A 0.12 deleterious(0) probably_damaging(0.946) TCGA-22-5479-01 2 96040112 96040112 G A KCNIP3 Missense_Mutation p.A84T 0.13 tolerated(0.13) benign(0.016) TCGA-22-5479-01 2 96078425 96078425 G A FAHD2A Silent p.Q265Q 0.18 TCGA-22-5479-01 2 98341608 98341608 C G ZAP70 Silent p.L152L 0.10 TCGA-22-5479-01 2 98737873 98737873 C G VWA3B Missense_Mutation p.S218R 0.36 tolerated(0.1) benign(0.188) TCGA-22-5479-01 3 101484156 101484156 G A CEP97 Missense_Mutation p.E787K 0.12 deleterious(0.01) possibly_damaging(0.881) TCGA-22-5479-01 3 101484327 101484327 G C CEP97 Missense_Mutation p.E844Q 0.13 tolerated_low_confidence(0.15) benign(0.432) TCGA-22-5479-01 3 10861272 10861272 C A SLC6A11 Missense_Mutation p.P127T 0.31 deleterious(0) possibly_damaging(0.811) TCGA-22-5479-01 3 108677759 108677759 G T MORC1 3'UTR 0.16 TCGA-22-5479-01 3 109023440 109023440 C T DPPA2 Missense_Mutation p.G246S 0.33 deleterious(0.04) benign(0.057) TCGA-22-5479-01 3 112299946 112299946 G A SLC35A5 Missense_Mutation p.D328N 0.15 deleterious(0.02) probably_damaging(1) TCGA-22-5479-01 3 113374945 113374945 G A KIAA2018 Missense_Mutation p.H1862Y 0.09 possibly_damaging(0.493) TCGA-22-5479-01 3 119132823 119132823 C T ARHGAP31 Nonsense_Mutation p.Q683* 0.12 TCGA-22-5479-01 3 119134927 119134927 C T ARHGAP31 Missense_Mutation p.S1384F 0.11 deleterious(0) probably_damaging(0.999) TCGA-22-5479-01 3 120315246 120315246 C T NDUFB4 Silent p.L14L 0.08 TCGA-22-5479-01 3 121409992 121409992 G C GOLGB1 Missense_Mutation p.S2740C 0.07 probably_damaging(0.979) TCGA-22-5479-01 3 121414772 121414772 G C GOLGB1 Missense_Mutation p.S1533C 0.07 benign(0.011) TCGA-22-5479-01 3 121659815 121659815 G C SLC15A2 Silent p.G717G 0.06 TCGA-22-5479-01 3 121659853 121659853 G C SLC15A2 Nonstop_Mutation p.*730Sext*1 0.11 TCGA-22-5479-01 3 124438131 124438131 G T RP11-71H17.7 5'Flank 0.31 TCGA-22-5479-01 3 125282545 125282545 C T OSBPL11 Silent p.A337A 0.12 TCGA-22-5479-01 3 129284310 129284310 T A PLXND1 Missense_Mutation p.E1465V 0.11 tolerated(0.07) benign(0.1) TCGA-22-5479-01 3 132440815 132440815 C T NPHP3 Missense_Mutation p.E129K 0.09 deleterious(0) probably_damaging(0.998) TCGA-22-5479-01 3 133647067 133647067 G T C3orf36 3'UTR 0.18 TCGA-22-5479-01 3 133667749 133667749 C T SLCO2A1 Missense_Mutation p.D310N 0.26 tolerated(0.09) benign(0.236) TCGA-22-5479-01 3 142177806 142177806 G A ATR Silent p.F2499F 0.12 TCGA-22-5479-01 3 142720442 142720442 C A U2SURP 5'UTR 0.31 TCGA-22-5479-01 3 147127976 147127976 G A ZIC1 Missense_Mutation p.G26D 0.33 deleterious_low_confidence(0.02) benign(0.19) TCGA-22-5479-01 3 151474948 151474948 G A AADACL2 Missense_Mutation p.E258K 0.11 tolerated(0.84) benign(0.009) TCGA-22-5479-01 3 158541911 158541911 A G MFSD1 Splice_Site p.X441_splice 0.25 TCGA-22-5479-01 3 160474037 160474037 G T PPM1L 5'UTR 0.27 TCGA-22-5479-01 3 169700648 169700669 AAAAAAAGAAAAAGAGAAAAAA - SEC62 Frame_Shift_Del p.K137Mfs*58 0.38 TCGA-22-5479-01 3 169700671 169700671 A C SEC62 Missense_Mutation p.K143T 0.48 tolerated(0.4) possibly_damaging(0.728) TCGA-22-5479-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.38 deleterious(0.04) probably_damaging(0.96) TCGA-22-5479-01 3 179051119 179051119 C G ZNF639 Missense_Mutation p.Q123E 0.13 tolerated(0.21) benign(0.014) TCGA-22-5479-01 3 183911358 183911358 C T ABCF3 Missense_Mutation p.R668C 0.07 deleterious(0.03) benign(0.12) TCGA-22-5479-01 3 33643967 33643967 A G CLASP2 Intron 0.17 TCGA-22-5479-01 3 36527669 36527669 C T STAC Silent p.F205F 0.32 TCGA-22-5479-01 3 47604067 47604067 G A CSPG5 3'UTR 0.14 TCGA-22-5479-01 3 48562998 48562998 C G PFKFB4 Missense_Mutation p.E364D 0.23 probably_damaging(0.968) TCGA-22-5479-01 3 49064417 49064417 C T IMPDH2 Missense_Mutation p.E199K 0.20 tolerated(0.46) benign(0.008) TCGA-22-5479-01 3 49897067 49897067 G T CAMKV Missense_Mutation p.A397D 0.39 tolerated(0.12) probably_damaging(0.994) TCGA-22-5479-01 3 93779814 93779814 T A DHFRL1 Missense_Mutation p.E181V 0.06 deleterious(0) probably_damaging(0.978) TCGA-22-5479-01 3 97720521 97720521 A T GABRR3 RNA 0.29 TCGA-22-5479-01 3 98189173 98189173 C G OR5K1 Missense_Mutation p.F251L 0.06 deleterious(0.01) possibly_damaging(0.492) TCGA-22-5479-01 4 101953424 101953424 C A PPP3CA Missense_Mutation p.A447S 0.14 tolerated(0.06) benign(0.401) TCGA-22-5479-01 4 103870544 103870544 G A SLC9B1 Silent p.I84I 0.18 TCGA-22-5479-01 4 10444823 10444823 G C ZNF518B Missense_Mutation p.L1044V 0.09 tolerated(0.41) probably_damaging(0.991) TCGA-22-5479-01 4 110908930 110908930 G T EGF Missense_Mutation p.S841I 0.28 deleterious(0.01) benign(0.067) TCGA-22-5479-01 4 113352357 113352357 G A ALPK1 Missense_Mutation p.D552N 0.17 tolerated(0.13) benign(0.139) TCGA-22-5479-01 4 113436391 113436391 C G NEUROG2 Missense_Mutation p.G81R 0.29 tolerated_low_confidence(0.26) possibly_damaging(0.755) TCGA-22-5479-01 4 114254248 114254248 G A ANK2 Missense_Mutation p.R1088Q 0.26 probably_damaging(1) TCGA-22-5479-01 4 122078282 122078282 G T TNIP3 Silent p.R187R 0.23 TCGA-22-5479-01 4 126242091 126242091 C G FAT4 Missense_Mutation p.R1509G 0.34 possibly_damaging(0.805) TCGA-22-5479-01 4 140262164 140262164 C G NAA15 Missense_Mutation p.Q115E 0.13 deleterious(0) possibly_damaging(0.529) TCGA-22-5479-01 4 146824170 146824170 A C ZNF827 Missense_Mutation p.L81V 0.19 deleterious(0) benign(0.214) TCGA-22-5479-01 4 159572920 159572920 T C RXFP1 Missense_Mutation p.S663P 0.07 deleterious(0) probably_damaging(0.968) TCGA-22-5479-01 4 185045355 185045355 G A ENPP6 Silent p.I164I 0.11 TCGA-22-5479-01 4 42580298 42580298 G C ATP8A1 Silent p.T369T 0.11 TCGA-22-5479-01 4 57843186 57843186 C A NOA1 Missense_Mutation p.R189L 0.33 deleterious(0.01) possibly_damaging(0.716) TCGA-22-5479-01 4 62775314 62775314 G A LPHN3 Missense_Mutation p.E574K 0.24 tolerated(0.07) probably_damaging(0.983) TCGA-22-5479-01 4 678391 678391 G T MFSD7 Intron 0.08 TCGA-22-5479-01 4 69343101 69343101 C T TMPRSS11E Missense_Mutation p.A241V 0.30 tolerated(0.08) benign(0.144) TCGA-22-5479-01 4 70079882 70079882 G C UGT2B11 Missense_Mutation p.L187V 0.09 tolerated(0.07) benign(0.297) TCGA-22-5479-01 4 7026794 7026794 C G TBC1D14 Missense_Mutation p.F607L 0.15 deleterious(0.04) probably_damaging(0.983) TCGA-22-5479-01 4 70592751 70592751 G A SULT1B1 3'UTR 0.14 TCGA-22-5479-01 4 74007991 74007991 G C ANKRD17 Missense_Mutation p.Q733E 0.15 benign(0.341) TCGA-22-5479-01 4 77053819 77053819 C G NUP54 Missense_Mutation p.R255T 0.18 deleterious(0) possibly_damaging(0.821) TCGA-22-5479-01 4 81967575 81967575 A T BMP3 Missense_Mutation p.N334Y 0.26 deleterious(0.01) possibly_damaging(0.519) TCGA-22-5479-01 4 85771105 85771105 G T WDFY3 Nonsense_Mutation p.S85* 0.12 TCGA-22-5479-01 4 94006303 94006303 C G GRID2 Silent p.T134T 0.17 TCGA-22-5479-01 4 9446270 9446270 T C DEFB131 Missense_Mutation p.L4S 0.38 tolerated(0.16) possibly_damaging(0.587) TCGA-22-5479-01 4 96762390 96762390 C A PDHA2 Silent p.G363G 0.27 TCGA-22-5479-01 5 122725707 122725707 T A CEP120 Missense_Mutation p.H389L 0.12 tolerated(0.65) benign(0.004) TCGA-22-5479-01 5 122725710 122725710 G T CEP120 Missense_Mutation p.S388Y 0.10 tolerated(0.07) benign(0.065) TCGA-22-5479-01 5 132736597 132736597 T G FSTL4 Missense_Mutation p.K81T 0.16 deleterious(0.04) benign(0.001) TCGA-22-5479-01 5 137680988 137680988 G A FAM53C Missense_Mutation p.R204Q 0.16 tolerated(0.7) benign(0) TCGA-22-5479-01 5 13788847 13788847 C G DNAH5 Missense_Mutation p.L2875F 0.05 possibly_damaging(0.587) TCGA-22-5479-01 5 13865880 13865880 G C DNAH5 Missense_Mutation p.L1418V 0.04 possibly_damaging(0.694) TCGA-22-5479-01 5 13900437 13900437 G C DNAH5 Missense_Mutation p.Q713E 0.06 benign(0.149) TCGA-22-5479-01 5 139260476 139260476 T A NRG2 Missense_Mutation p.K319M 0.10 deleterious(0) probably_damaging(0.984) TCGA-22-5479-01 5 140182913 140182913 T C PCDHA3 Silent p.L711L 0.18 TCGA-22-5479-01 5 140209539 140209539 G A PCDHA6 Silent p.P621P 0.12 TCGA-22-5479-01 5 140480367 140480367 T C PCDHB3 Missense_Mutation p.I45T 0.15 deleterious_low_confidence(0) possibly_damaging(0.581) TCGA-22-5479-01 5 140553576 140553576 A G PCDHB7 Missense_Mutation p.D387G 0.18 deleterious_low_confidence(0.04) benign(0.017) TCGA-22-5479-01 5 140711696 140711696 A G PCDHGA1 Missense_Mutation p.N482S 0.17 tolerated_low_confidence(0.33) benign(0.021) TCGA-22-5479-01 5 140741811 140741811 C T PCDHGB2 Silent p.F703F 0.22 TCGA-22-5479-01 5 140741812 140741812 T C PCDHGB2 Missense_Mutation p.F704L 0.24 tolerated(1) benign(0) TCGA-22-5479-01 5 140764750 140764750 G C PCDHGA7 Missense_Mutation p.D762H 0.17 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-22-5479-01 5 141016349 141016349 C G HDAC3 Missense_Mutation p.K3N 0.23 deleterious(0.03) benign(0.002) TCGA-22-5479-01 5 154179491 154179491 C T LARP1 Silent p.V458V 0.31 TCGA-22-5479-01 5 156590265 156590265 G C FAM71B Silent p.S337S 0.13 TCGA-22-5479-01 5 156786064 156786064 G C CYFIP2 Missense_Mutation p.G883R 0.17 deleterious(0) probably_damaging(0.983) TCGA-22-5479-01 5 162943657 162943657 C T MAT2B Silent p.F220F 0.13 TCGA-22-5479-01 5 16453247 16453247 C T ZNF622 Missense_Mutation p.R394H 0.05 deleterious(0) possibly_damaging(0.902) TCGA-22-5479-01 5 169126384 169126384 A C DOCK2 Splice_Site p.X352_splice 0.20 TCGA-22-5479-01 5 176721531 176721531 C T NSD1 Missense_Mutation p.P2388S 0.11 tolerated_low_confidence(0.07) benign(0.004) TCGA-22-5479-01 5 2752850 2752850 G T C5orf38 Silent p.P105P 0.09 TCGA-22-5479-01 5 33649746 33649746 G T ADAMTS12 Missense_Mutation p.P416Q 0.13 deleterious(0) possibly_damaging(0.861) TCGA-22-5479-01 5 33649747 33649747 G T ADAMTS12 Missense_Mutation p.P416T 0.12 deleterious(0) probably_damaging(0.986) TCGA-22-5479-01 5 33684155 33684155 C A ADAMTS12 Missense_Mutation p.V214F 0.24 tolerated(0.71) benign(0.001) TCGA-22-5479-01 5 41009408 41009408 C T MROH2B Missense_Mutation p.D1132N 0.08 tolerated(0.13) benign(0.064) TCGA-22-5479-01 5 54404065 54404065 A G GZMA Missense_Mutation p.H157R 0.16 tolerated(0.66) benign(0.001) TCGA-22-5479-01 5 54424361 54424361 T C CDC20B Missense_Mutation p.H261R 0.14 tolerated(0.36) benign(0.001) TCGA-22-5479-01 5 64084776 64084776 A T CWC27 Splice_Site p.X200_splice 0.08 TCGA-22-5479-01 5 67592069 67592069 A G PIK3R1 Missense_Mutation p.S629G 0.20 tolerated(0.08) benign(0.272) TCGA-22-5479-01 5 73930963 73930963 C T ENC1 Missense_Mutation p.G450R 0.22 deleterious(0.03) probably_damaging(0.972) TCGA-22-5479-01 5 76331468 76331468 C G AGGF1 Missense_Mutation p.S139C 0.21 deleterious(0.05) benign(0.01) TCGA-22-5479-01 5 79086888 79086888 A T CMYA5 Missense_Mutation p.T3929S 0.18 benign(0.28) TCGA-22-5479-01 5 83356161 83356161 A T EDIL3 Missense_Mutation p.N365K 0.16 deleterious(0) probably_damaging(0.998) TCGA-22-5479-01 5 85578656 85578656 C A NBPF22P RNA 0.13 TCGA-22-5479-01 5 9066551 9066551 T A SEMA5A Missense_Mutation p.S761C 0.38 tolerated(0.29) possibly_damaging(0.907) TCGA-22-5479-01 5 9629640 9629640 C G TAS2R1 Missense_Mutation p.E169Q 0.21 tolerated(0.46) benign(0.229) TCGA-22-5479-01 6 112670883 112670883 C T RFPL4B 5'UTR 0.09 TCGA-22-5479-01 6 112670921 112670921 G T RFPL4B Missense_Mutation p.R4L 0.14 tolerated(0.18) benign(0.062) TCGA-22-5479-01 6 127836007 127836007 G T SOGA3 Silent p.I429I 0.31 TCGA-22-5479-01 6 131919475 131919475 C A MED23 Missense_Mutation p.M853I 0.19 tolerated(0.13) benign(0.101) TCGA-22-5479-01 6 135239801 135239801 C G ALDH8A1 Missense_Mutation p.E406Q 0.24 tolerated(0.06) benign(0.093) TCGA-22-5479-01 6 143094664 143094664 T C HIVEP2 Silent p.S404S 0.20 TCGA-22-5479-01 6 152631018 152631018 C T SYNE1 Silent p.E5718E 0.12 TCGA-22-5479-01 6 152683335 152683335 C G SYNE1 Silent p.R3423R 0.21 TCGA-22-5479-01 6 160241618 160241618 G T PNLDC1 3'UTR 0.17 TCGA-22-5479-01 6 169625276 169625276 G A THBS2 Missense_Mutation p.R913W 0.19 deleterious(0) probably_damaging(1) TCGA-22-5479-01 6 27218995 27218995 G A PRSS16 Splice_Site p.X224_splice 0.18 TCGA-22-5479-01 6 27806569 27806569 A T HIST1H2BN Nonsense_Mutation p.K44* 0.18 TCGA-22-5479-01 6 28478633 28478633 G T GPX6 Missense_Mutation p.L46I 0.20 tolerated(0.33) benign(0.026) TCGA-22-5479-01 6 28541467 28541467 G A SCAND3 Silent p.F733F 0.13 TCGA-22-5479-01 6 32904934 32904934 C T HLA-DMB Intron 0.16 TCGA-22-5479-01 6 33156219 33156219 G A COL11A2 Missense_Mutation p.P176S 0.19 probably_damaging(0.918) TCGA-22-5479-01 6 33766902 33766902 C G MLN Missense_Mutation p.E72Q 0.18 tolerated(0.07) probably_damaging(0.996) TCGA-22-5479-01 6 35053560 35053560 C T ANKS1A Silent p.I1050I 0.23 TCGA-22-5479-01 6 39272365 39272365 C T KCNK17 Missense_Mutation p.G140E 0.19 deleterious(0) probably_damaging(0.997) TCGA-22-5479-01 6 42985588 42985588 C T KLHDC3 Intron 0.15 TCGA-22-5479-01 6 50681796 50681796 C A TFAP2D Missense_Mutation p.H10N 0.20 deleterious_low_confidence(0.01) benign(0.403) TCGA-22-5479-01 6 70812116 70812116 T C COL19A1 Splice_Site p.X426_splice 0.18 TCGA-22-5479-01 6 70851813 70851813 G A COL19A1 Missense_Mutation p.G504E 0.23 deleterious(0) probably_damaging(1) TCGA-22-5479-01 6 70926596 70926596 C A COL9A1 3'UTR 0.23 TCGA-22-5479-01 6 72967956 72967956 T A RIMS1 Missense_Mutation p.S967T 0.15 deleterious(0) probably_damaging(0.983) TCGA-22-5479-01 6 7410637 7410637 C G RIOK1 Missense_Mutation p.Q408E 0.27 tolerated(0.65) benign(0.001) TCGA-22-5479-01 6 82935239 82935239 T C IBTK Silent p.Q260Q 0.16 TCGA-22-5479-01 6 97246572 97246572 G A GPR63 Nonsense_Mutation p.Q346* 0.18 TCGA-22-5479-01 6 99956530 99956530 C A USP45 Missense_Mutation p.V77L 0.18 tolerated(0.37) benign(0.05) TCGA-22-5479-01 7 100319586 100319586 C A EPO Missense_Mutation p.T54K 0.23 tolerated(0.94) benign(0.026) TCGA-22-5479-01 7 100386933 100386933 G A ZAN Missense_Mutation p.E2440K 0.12 unknown(0) TCGA-22-5479-01 7 100679195 100679195 G A MUC17 Missense_Mutation p.E1500K 0.14 unknown(0) TCGA-22-5479-01 7 100681598 100681598 A G MUC17 Missense_Mutation p.T2301A 0.21 unknown(0) TCGA-22-5479-01 7 101192481 101192481 C - COL26A1 Frame_Shift_Del p.P325Qfs*24 0.14 TCGA-22-5479-01 7 103179530 103179530 C G RELN Missense_Mutation p.C2392S 0.21 tolerated(0.12) possibly_damaging(0.788) TCGA-22-5479-01 7 103368572 103368572 C A RELN Missense_Mutation p.G247C 0.24 deleterious(0) possibly_damaging(0.62) TCGA-22-5479-01 7 107643381 107643381 C G LAMB1 5'UTR 0.35 TCGA-22-5479-01 7 11446551 11446551 G A THSD7A Missense_Mutation p.P1350S 0.12 tolerated(0.21) benign(0.009) TCGA-22-5479-01 7 11630197 11630197 C A THSD7A Missense_Mutation p.R448L 0.17 tolerated(0.16) possibly_damaging(0.686) TCGA-22-5479-01 7 120591197 120591197 G A ING3 Intron 0.26 TCGA-22-5479-01 7 122337838 122337838 G A RNF133 3'UTR 0.17 TCGA-22-5479-01 7 122763180 122763180 C T SLC13A1 Silent p.E450E 0.12 TCGA-22-5479-01 7 124467303 124467303 C T POT1 Missense_Mutation p.G551R 0.15 deleterious(0.02) probably_damaging(0.965) TCGA-22-5479-01 7 134936549 134936549 T C STRA8 Missense_Mutation p.I245T 0.26 deleterious(0.02) possibly_damaging(0.642) TCGA-22-5479-01 7 136699955 136699955 C T CHRM2 Missense_Mutation p.L115F 0.32 deleterious(0) probably_damaging(1) TCGA-22-5479-01 7 137341234 137341234 G T DGKI Missense_Mutation p.A220D 0.31 tolerated(0.52) possibly_damaging(0.761) TCGA-22-5479-01 7 142326973 142326973 G A TRBV19 Missense_Mutation p.E91K 0.09 tolerated(0.13) benign(0.058) TCGA-22-5479-01 7 143047717 143047717 G T CLCN1 Silent p.G855G 0.18 TCGA-22-5479-01 7 143701285 143701285 C A OR6B1 Missense_Mutation p.L66M 0.22 tolerated(0.22) possibly_damaging(0.666) TCGA-22-5479-01 7 143792936 143792936 G A OR2A12 Missense_Mutation p.V246M 0.14 deleterious(0.04) possibly_damaging(0.868) TCGA-22-5479-01 7 146741062 146741062 G T CNTNAP2 Missense_Mutation p.A156S 0.23 deleterious(0.04) possibly_damaging(0.855) TCGA-22-5479-01 7 14758312 14758312 T A DGKB Splice_Site p.X108_splice 0.25 TCGA-22-5479-01 7 148875812 148875812 C G ZNF398 Missense_Mutation p.S283C 0.11 deleterious(0.01) possibly_damaging(0.479) TCGA-22-5479-01 7 150171186 150171186 G C GIMAP8 Missense_Mutation p.G257R 0.08 deleterious(0.04) probably_damaging(1) TCGA-22-5479-01 7 150554740 150554740 C T AOC1 Silent p.T394T 0.25 TCGA-22-5479-01 7 150715509 150715509 G T ATG9B Missense_Mutation p.Q582K 0.23 tolerated(0.11) benign(0.073) TCGA-22-5479-01 7 151856005 151856005 G A KMT2C Silent p.D3871D 0.13 TCGA-22-5479-01 7 151878287 151878287 G A KMT2C Nonsense_Mutation p.Q2220* 0.31 TCGA-22-5479-01 7 21698584 21698584 G A DNAH11 Missense_Mutation p.G1760R 0.22 benign(0.168) TCGA-22-5479-01 7 25176374 25176374 C T C7orf31 Silent p.P330P 0.08 TCGA-22-5479-01 7 27222366 27222366 A G HOXA11 3'UTR 0.35 TCGA-22-5479-01 7 35293163 35293163 G T TBX20 Silent p.L23L 0.26 TCGA-22-5479-01 7 37907424 37907424 C A NME8 Missense_Mutation p.P248T 0.32 tolerated(0.17) benign(0.022) TCGA-22-5479-01 7 37924011 37924011 T C NME8 Silent p.N367N 0.23 TCGA-22-5479-01 7 37988591 37988591 G T EPDR1 Missense_Mutation p.G140V 0.09 deleterious(0) probably_damaging(0.999) TCGA-22-5479-01 7 44747265 44747265 A T OGDH Nonsense_Mutation p.K961* 0.24 TCGA-22-5479-01 7 48018335 48018335 C T HUS1 Missense_Mutation p.C44Y 0.16 tolerated(0.12) benign(0.015) TCGA-22-5479-01 7 48312586 48312586 C G ABCA13 Missense_Mutation p.S1108C 0.26 probably_damaging(0.935) TCGA-22-5479-01 7 5352313 5352313 G A TNRC18 Silent p.L2737L 0.11 TCGA-22-5479-01 7 6456306 6456306 T A DAGLB Missense_Mutation p.Y460F 0.11 tolerated(0.45) benign(0.024) TCGA-22-5479-01 7 7613189 7613189 C T MIOS Silent p.S361S 0.25 TCGA-22-5479-01 7 87908741 87908741 T A STEAP4 Missense_Mutation p.Q451L 0.27 deleterious(0) possibly_damaging(0.611) TCGA-22-5479-01 7 92404147 92404147 T A CDK6 Splice_Site p.X78_splice 0.23 TCGA-22-5479-01 7 94049548 94049548 G A COL1A2 Missense_Mutation p.E695K 0.11 unknown(0) TCGA-22-5479-01 7 94229968 94229968 G A SGCE Missense_Mutation p.R343W 0.20 deleterious(0) probably_damaging(0.999) TCGA-22-5479-01 7 94855388 94855388 C T PPP1R9A Missense_Mutation p.S691L 0.34 tolerated(0.46) benign(0.253) TCGA-22-5479-01 7 94897931 94897931 C A PPP1R9A Missense_Mutation p.S912Y 0.14 deleterious(0.01) probably_damaging(0.968) TCGA-22-5479-01 7 98530881 98530881 C T TRRAP Silent p.V1290V 0.25 TCGA-22-5479-01 7 99097637 99097637 T C ZNF394 Missense_Mutation p.D27G 0.37 tolerated(0.41) benign(0) TCGA-22-5479-01 7 99425806 99425806 A G CYP3A43 Missense_Mutation p.Y23C 0.28 deleterious(0.01) possibly_damaging(0.764) TCGA-22-5479-01 8 106814452 106814452 C T ZFPM2 Silent p.H714H 0.11 TCGA-22-5479-01 8 113569113 113569113 G C CSMD3 Missense_Mutation p.H1371Q 0.25 deleterious(0.02) probably_damaging(1) TCGA-22-5479-01 8 125464451 125464451 A G TRMT12 Missense_Mutation p.Y428C 0.22 deleterious(0) probably_damaging(0.997) TCGA-22-5479-01 8 134107416 134107416 G A TG Silent p.Q2456Q 0.10 TCGA-22-5479-01 8 139263173 139263173 C A FAM135B Missense_Mutation p.Q151H 0.22 tolerated(1) benign(0.015) TCGA-22-5479-01 8 139380230 139380230 C G FAM135B 5'UTR 0.22 TCGA-22-5479-01 8 144808423 144808423 C T FAM83H Missense_Mutation p.E1070K 0.17 deleterious(0.01) benign(0.254) TCGA-22-5479-01 8 145667669 145667669 C T TONSL Missense_Mutation p.M235I 0.09 tolerated(0.18) benign(0.214) TCGA-22-5479-01 8 23112846 23112846 C T CHMP7 Silent p.L186L 0.13 TCGA-22-5479-01 8 24171019 24171019 A G ADAM28 Missense_Mutation p.T168A 0.22 deleterious(0.02) benign(0.08) TCGA-22-5479-01 8 25327482 25327482 C T CDCA2 Missense_Mutation p.T269I 0.25 deleterious(0.03) possibly_damaging(0.89) TCGA-22-5479-01 8 3165835 3165835 T A CSMD1 Silent p.I1274I 0.13 TCGA-22-5479-01 8 3565968 3565968 G A CSMD1 Missense_Mutation p.P326L 0.17 probably_damaging(0.939) TCGA-22-5479-01 8 37794322 37794322 C T GOT1L1 Missense_Mutation p.D227N 0.36 deleterious(0) probably_damaging(0.963) TCGA-22-5479-01 8 4494972 4494972 C A CSMD1 Missense_Mutation p.G65V 0.19 probably_damaging(1) TCGA-22-5479-01 8 48650556 48650556 C A CEBPD Missense_Mutation p.G43C 0.20 deleterious(0.03) benign(0.064) TCGA-22-5479-01 8 52320698 52320698 C G PXDNL Missense_Mutation p.L1162F 0.15 deleterious(0) probably_damaging(0.98) TCGA-22-5479-01 8 53044591 53044591 C T ST18 Missense_Mutation p.E865K 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-22-5479-01 8 53126764 53126764 C T ST18 Silent p.E18E 0.18 TCGA-22-5479-01 8 59058765 59058765 G A FAM110B 5'UTR 0.26 TCGA-22-5479-01 8 67578502 67578502 C G VCPIP1 Missense_Mutation p.R231P 0.12 deleterious(0) probably_damaging(0.997) TCGA-22-5479-01 8 69143583 69143583 C G PREX2 Missense_Mutation p.C1597W 0.21 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-22-5479-01 8 69730588 69730588 A G C8orf34 3'UTR 0.27 TCGA-22-5479-01 8 77618225 77618225 G T ZFHX4 Missense_Mutation p.M634I 0.27 benign(0.043) TCGA-22-5479-01 8 77776167 77776167 G C ZFHX4 Missense_Mutation p.R3406T 0.15 possibly_damaging(0.52) TCGA-22-5479-01 8 86171656 86171656 G A CA13 Missense_Mutation p.R81H 0.15 deleterious(0.04) benign(0.003) TCGA-22-5479-01 8 88885729 88885729 C T DCAF4L2 Silent p.V157V 0.27 TCGA-22-5479-01 8 9413341 9413341 C T TNKS 5'Flank 0.21 TCGA-22-5479-01 9 100090382 100090382 G A CCDC180 Missense_Mutation p.S625N 0.27 deleterious(0) probably_damaging(0.999) TCGA-22-5479-01 9 102607028 102607028 G T NR4A3 Missense_Mutation p.W462L 0.18 deleterious(0) possibly_damaging(0.904) TCGA-22-5479-01 9 111947885 111947885 C A EPB41L4B Missense_Mutation p.A768S 0.33 deleterious_low_confidence(0.03) benign(0.22) TCGA-22-5479-01 9 113205979 113205979 G A SVEP1 Silent p.G1495G 0.11 TCGA-22-5479-01 9 114449086 114449086 A G C9orf84 Silent p.G1433G 0.23 TCGA-22-5479-01 9 115422211 115422211 G C KIAA1958 Missense_Mutation p.Q671H 0.18 deleterious(0.01) benign(0.224) TCGA-22-5479-01 9 117838827 117838827 C A TNC Missense_Mutation p.R901L 0.16 deleterious(0.04) probably_damaging(0.986) TCGA-22-5479-01 9 119976742 119976742 G A ASTN2 Missense_Mutation p.R304W 0.15 deleterious_low_confidence(0.03) unknown(0) TCGA-22-5479-01 9 119976939 119976939 C A ASTN2 Missense_Mutation p.R238L 0.21 deleterious_low_confidence(0) unknown(0) TCGA-22-5479-01 9 121930240 121930240 G T BRINP1 Silent p.R470R 0.24 TCGA-22-5479-01 9 131477714 131477714 G A PKN3 Missense_Mutation p.V595M 0.24 deleterious(0) possibly_damaging(0.815) TCGA-22-5479-01 9 135139555 135139555 G C SETX 3'UTR 0.12 TCGA-22-5479-01 9 136641197 136641197 G A VAV2 Silent p.P657P 0.14 TCGA-22-5479-01 9 139757444 139757444 T A EDF1 Missense_Mutation p.N100I 0.07 deleterious(0) probably_damaging(0.983) TCGA-22-5479-01 9 140510226 140510226 C T C9orf37 Silent p.G142G 0.16 TCGA-22-5479-01 9 14307089 14307089 G A NFIB Missense_Mutation p.S154F 0.11 deleterious(0) probably_damaging(0.996) TCGA-22-5479-01 9 17786515 17786515 C A SH3GL2 Nonsense_Mutation p.C108* 0.40 TCGA-22-5479-01 9 21201924 21201924 G T IFNA7 Missense_Mutation p.H81N 0.28 deleterious(0.01) possibly_damaging(0.878) TCGA-22-5479-01 9 35045710 35045710 C A C9orf131 Silent p.I1028I 0.15 TCGA-22-5479-01 9 35382383 35382383 T G UNC13B Missense_Mutation p.M813R 0.14 deleterious(0) probably_damaging(0.946) TCGA-22-5479-01 9 36369729 36369729 T C RNF38 Missense_Mutation p.D186G 0.17 deleterious(0.02) probably_damaging(0.976) TCGA-22-5479-01 9 36369730 36369730 C A RNF38 Missense_Mutation p.D186Y 0.16 deleterious(0) probably_damaging(0.996) TCGA-22-5479-01 9 40702807 40702807 C T SPATA31A3 Missense_Mutation p.P155L 0.28 tolerated(0.11) probably_damaging(0.96) TCGA-22-5479-01 9 5923289 5923289 T A KIAA2026 Missense_Mutation p.I903L 0.38 tolerated(0.06) benign(0.01) TCGA-22-5479-01 9 79986011 79986011 G A VPS13A Missense_Mutation p.R3008K 0.17 deleterious(0) probably_damaging(0.999) TCGA-22-5479-01 9 92001336 92001336 G C SEMA4D Silent p.T464T 0.11 TCGA-22-5479-01 9 98683504 98683504 A G ERCC6L2 Silent p.T413T 0.33 TCGA-22-5479-01 9 99154699 99154699 C T ZNF367 Missense_Mutation p.A271T 0.12 tolerated(0.08) benign(0.007) TCGA-22-5479-01 X 105190453 105190453 G C NRK Missense_Mutation p.K1451N 0.27 tolerated(1) benign(0) TCGA-22-5479-01 X 107420071 107420071 C A COL4A6 Nonsense_Mutation p.G897* 0.55 TCGA-22-5479-01 X 129518422 129518422 C G GPR119 Missense_Mutation p.D334H 0.15 tolerated_low_confidence(0.08) benign(0.003) TCGA-22-5479-01 X 13607720 13607720 C A EGFL6 Silent p.V40V 0.40 TCGA-22-5479-01 X 18926139 18926139 T C PHKA2 Missense_Mutation p.H799R 0.50 tolerated(0.54) benign(0.001) TCGA-22-5479-01 X 26212078 26212078 C T MAGEB6 Missense_Mutation p.H39Y 0.21 tolerated(1) benign(0.224) TCGA-22-5479-01 X 46713024 46713024 C T RP2 Silent p.I72I 0.55 TCGA-22-5479-01 X 68382750 68382750 C T PJA1 Missense_Mutation p.R111K 0.24 deleterious(0.03) possibly_damaging(0.519) TCGA-22-5479-01 X 70342154 70342154 C T MED12 Silent p.S402S 0.51 TCGA-22-5479-01 X 70468993 70468993 G C ZMYM3 Silent p.V499V 0.29 TCGA-22-5479-01 X 75003760 75003760 T C MAGEE2 Missense_Mutation p.H376R 0.44 deleterious(0) probably_damaging(0.991) TCGA-22-5479-01 X 84310911 84310911 G C APOOL Missense_Mutation p.G125A 0.52 deleterious(0) probably_damaging(1) TCGA-22-5479-01 X 84634451 84634451 C A POF1B Silent p.S3S 0.56 TCGA-22-5479-01 X 91133115 91133115 C G PCDH11X Missense_Mutation p.R626G 0.42 tolerated(0.09) possibly_damaging(0.527) TCGA-22-5480-01 10 1058523 1058523 G A GTPBP4 Missense_Mutation p.R488Q 0.28 deleterious(0.04) probably_damaging(0.999) TCGA-22-5480-01 10 118385516 118385516 G A PNLIPRP2 Silent p.K88K 0.33 TCGA-22-5480-01 10 135233567 135233567 A T MTG1 Silent p.A301A 0.32 TCGA-22-5480-01 10 17365142 17365142 G - ST8SIA6 Frame_Shift_Del p.P217Qfs*17 0.30 TCGA-22-5480-01 10 28348580 28348580 T C MPP7 Missense_Mutation p.K433E 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-22-5480-01 10 29759370 29759370 T C SVIL Missense_Mutation p.E1893G 0.26 deleterious(0) probably_damaging(0.963) TCGA-22-5480-01 10 323266 323266 T A DIP2C Nonstop_Mutation p.*1557Lext*21 0.15 TCGA-22-5480-01 10 7791344 7791344 C A ITIH2 3'UTR 0.32 TCGA-22-5480-01 10 97131754 97131754 C G SORBS1 Missense_Mutation p.R597T 0.33 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-22-5480-01 11 114465482 114465482 G A NXPE4 5'UTR 0.41 TCGA-22-5480-01 11 1157826 1157826 G T MUC5AC Missense_Mutation p.C298F 0.31 deleterious(0) probably_damaging(0.996) TCGA-22-5480-01 11 119206134 119206134 G A RNF26 Missense_Mutation p.G101E 0.25 deleterious(0) probably_damaging(0.991) TCGA-22-5480-01 11 124740172 124740172 A T ROBO3 Missense_Mutation p.K293M 0.32 deleterious(0) probably_damaging(1) TCGA-22-5480-01 11 125499319 125499319 G T CHEK1 Missense_Mutation p.D130Y 0.44 deleterious(0) probably_damaging(1) TCGA-22-5480-01 11 18955514 18955514 A G MRGPRX1 Missense_Mutation p.F273S 0.27 deleterious(0) probably_damaging(0.994) TCGA-22-5480-01 11 18956484 18956484 A G MRGPRX1 5'UTR 0.40 TCGA-22-5480-01 11 4903507 4903507 G A OR51T1 Silent p.V153V 0.34 TCGA-22-5480-01 11 55038239 55038239 C A TRIM48 3'UTR 0.29 TCGA-22-5480-01 11 55339938 55339938 T A OR4C16 Missense_Mutation p.I112N 0.26 deleterious(0) possibly_damaging(0.675) TCGA-22-5480-01 11 55339939 55339939 C A OR4C16 Silent p.I112I 0.26 TCGA-22-5480-01 11 55406540 55406540 C G OR4P4 Missense_Mutation p.A236G 0.73 deleterious(0) benign(0.142) TCGA-22-5480-01 11 55587418 55587418 T A OR5D18 Missense_Mutation p.F105I 0.30 tolerated(0.28) benign(0.182) TCGA-22-5480-01 11 56431579 56431579 G C OR5AR1 Missense_Mutation p.V140L 0.34 tolerated(0.27) benign(0.101) TCGA-22-5480-01 11 56431588 56431588 G C OR5AR1 Missense_Mutation p.A143P 0.34 tolerated(0.24) benign(0.376) TCGA-22-5480-01 11 56511195 56511195 A T OR9G4 Silent p.G31G 0.20 TCGA-22-5480-01 11 59245829 59245829 T G OR4D10 Missense_Mutation p.D309E 0.53 tolerated(1) benign(0.001) TCGA-22-5480-01 11 62286513 62286513 A C AHNAK Missense_Mutation p.L5126V 0.36 benign(0.122) TCGA-22-5480-01 11 66807557 66807557 G T SYT12 Silent p.T168T 0.09 TCGA-22-5480-01 12 104496843 104496843 A T HCFC2 Missense_Mutation p.N724I 0.32 tolerated(0.1) probably_damaging(0.989) TCGA-22-5480-01 12 122395069 122395069 G C WDR66 Missense_Mutation p.G542A 0.32 deleterious(0.02) benign(0.141) TCGA-22-5480-01 12 122966142 122966142 C G ZCCHC8 Missense_Mutation p.Q315H 0.37 deleterious(0.01) possibly_damaging(0.907) TCGA-22-5480-01 12 124110982 124110982 C T EIF2B1 Missense_Mutation p.A181T 0.32 tolerated(0.08) benign(0.346) TCGA-22-5480-01 12 129559299 129559299 A C TMEM132D Missense_Mutation p.S807R 0.27 tolerated(0.35) benign(0.099) TCGA-22-5480-01 12 133732712 133732712 G A ZNF10 Missense_Mutation p.E294K 0.29 tolerated(0.13) benign(0.122) TCGA-22-5480-01 12 3788200 3788200 G C EFCAB4B Silent p.R135R 0.21 TCGA-22-5480-01 12 40076850 40076850 A G C12orf40 Missense_Mutation p.K375R 0.11 tolerated(0.19) benign(0.05) TCGA-22-5480-01 12 43822570 43822570 G T ADAMTS20 Silent p.A1174A 0.43 TCGA-22-5480-01 12 52992868 52992868 A G KRT72 Missense_Mutation p.V152A 0.33 deleterious(0) possibly_damaging(0.669) TCGA-22-5480-01 12 54115397 54115397 C G CALCOCO1 Silent p.G204G 0.33 TCGA-22-5480-01 12 659049 659049 G A B4GALNT3 Missense_Mutation p.R323Q 0.29 tolerated(0.07) benign(0.016) TCGA-22-5480-01 12 7527189 7527189 C T CD163L1 Silent p.T1086T 0.21 TCGA-22-5480-01 12 83526007 83526007 A T TMTC2 Missense_Mutation p.N784Y 0.40 deleterious(0) probably_damaging(1) TCGA-22-5480-01 13 32813884 32813884 C G FRY Missense_Mutation p.L2185V 0.46 deleterious(0) probably_damaging(0.999) TCGA-22-5480-01 13 33110057 33110057 C A N4BP2L2 Intron 0.28 TCGA-22-5480-01 13 46946524 46946524 C A KIAA0226L Silent p.S29S 0.25 TCGA-22-5480-01 13 52026179 52026179 C T INTS6 Missense_Mutation p.D42N 0.22 deleterious(0.02) benign(0.149) TCGA-22-5480-01 13 72053374 72053374 C G DACH1 Missense_Mutation p.K601N 0.45 probably_damaging(0.969) TCGA-22-5480-01 14 19553590 19553590 G T POTEG Missense_Mutation p.R58S 0.12 deleterious_low_confidence(0) possibly_damaging(0.889) TCGA-22-5480-01 14 20979274 20979274 G T RNASE10 Missense_Mutation p.G215V 0.57 tolerated_low_confidence(0.08) possibly_damaging(0.638) TCGA-22-5480-01 14 39722083 39722083 G A MIA2 Missense_Mutation p.D567N 0.47 tolerated(0.11) benign(0.091) TCGA-22-5480-01 14 51190336 51190336 C T NIN 3'Flank 0.57 TCGA-22-5480-01 15 23006622 23006622 A G NIPA2 Missense_Mutation p.C228R 0.57 deleterious(0) probably_damaging(0.985) TCGA-22-5480-01 15 33835852 33835852 C G RYR3 Missense_Mutation p.L226V 0.61 benign(0.287) TCGA-22-5480-01 15 34396179 34396179 A G PGBD4 Missense_Mutation p.I483V 0.79 tolerated(0.14) benign(0.003) TCGA-22-5480-01 15 35703036 35703036 C G DPH6 Missense_Mutation p.E189D 0.48 tolerated(0.21) benign(0.02) TCGA-22-5480-01 15 45007653 45007675 CCAGCAGAGAATGGAAAGTCAAA - B2M Frame_Shift_Del p.P34Ffs*15 0.46 TCGA-22-5480-01 15 86213042 86213042 C G AKAP13 Missense_Mutation p.I1698M 0.53 deleterious(0) probably_damaging(0.971) TCGA-22-5480-01 16 50826618 50826618 T A CYLD Splice_Site p.X784_splice 0.31 TCGA-22-5480-01 17 28545947 28545947 C - SLC6A4 Frame_Shift_Del p.A116Hfs*146 0.32 TCGA-22-5480-01 17 42635359 42635359 C A FZD2 Silent p.T101T 0.33 TCGA-22-5480-01 17 42809611 42809611 A G DBF4B Silent p.G178G 0.31 TCGA-22-5480-01 17 56349033 56349033 C A MPO Missense_Mutation p.K671N 0.48 tolerated(0.58) benign(0.024) TCGA-22-5480-01 17 65924580 65924580 T G BPTF Missense_Mutation p.I1954R 0.12 probably_damaging(0.956) TCGA-22-5480-01 17 73727361 73727361 A G ITGB4 Missense_Mutation p.D376G 0.36 tolerated(0.17) benign(0.392) TCGA-22-5480-01 17 7579358 7579358 C A TP53 Missense_Mutation p.R110L 0.45 deleterious(0.04) possibly_damaging(0.898) TCGA-22-5480-01 17 80588802 80588802 T A WDR45B Missense_Mutation p.N80I 0.36 deleterious(0) possibly_damaging(0.827) TCGA-22-5480-01 17 8638528 8638528 G T CCDC42 Silent p.T253T 0.48 TCGA-22-5480-01 18 21399941 21399941 G A LAMA3 Missense_Mutation p.A762T 0.24 benign(0.04) TCGA-22-5480-01 18 40323598 40323598 C A RIT2 Missense_Mutation p.D172Y 0.22 deleterious(0) probably_damaging(1) TCGA-22-5480-01 18 5397068 5397069 - T EPB41L3 Frame_Shift_Ins p.P944Tfs*4 0.25 TCGA-22-5480-01 18 64172254 64172254 T C CDH19 Missense_Mutation p.E705G 0.42 deleterious(0) probably_damaging(0.999) TCGA-22-5480-01 18 67992174 67992174 G T SOCS6 Missense_Mutation p.K90N 0.33 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-22-5480-01 18 6971894 6971894 A G LAMA1 Silent p.Y2287Y 0.46 TCGA-22-5480-01 18 6971974 6971974 G C LAMA1 Missense_Mutation p.P2261A 0.17 tolerated(0.28) benign(0.052) TCGA-22-5480-01 18 6997882 6997882 G T LAMA1 Silent p.S1555S 0.31 TCGA-22-5480-01 18 77119463 77119463 G T ATP9B Splice_Site p.X1004_splice 0.26 TCGA-22-5480-01 19 11559430 11559430 G A PRKCSH Silent p.E417E 0.35 TCGA-22-5480-01 19 23578143 23578143 G T ZNF91 Missense_Mutation p.P5H 0.20 tolerated(0.05) benign(0.243) TCGA-22-5480-01 19 36727458 36727458 C G ZNF146 Missense_Mutation p.T39R 0.21 deleterious(0) possibly_damaging(0.673) TCGA-22-5480-01 19 43382112 43382112 T A PSG1 Missense_Mutation p.D128V 0.27 deleterious(0) benign(0.018) TCGA-22-5480-01 19 44469153 44469153 G T ZNF221 Missense_Mutation p.G45W 0.33 deleterious(0) probably_damaging(0.976) TCGA-22-5480-01 19 4792420 4792420 C A FEM1A Missense_Mutation p.T185K 0.17 deleterious(0) probably_damaging(0.991) TCGA-22-5480-01 19 49621848 49621848 C G C19orf73 3'UTR 0.49 TCGA-22-5480-01 19 55046829 55046829 C A KIR3DX1 Nonsense_Mutation p.S125* 0.40 TCGA-22-5480-01 19 56369053 56369053 C A NLRP4 Silent p.T98T 0.27 TCGA-22-5480-01 19 6665114 6665114 G T TNFSF14 Missense_Mutation p.S182R 0.39 tolerated(0.11) possibly_damaging(0.875) TCGA-22-5480-01 19 9074571 9074571 C T MUC16 Missense_Mutation p.G4292D 0.29 unknown(0) TCGA-22-5480-01 1 101705192 101705192 G T S1PR1 Missense_Mutation p.V218F 0.32 deleterious(0) possibly_damaging(0.888) TCGA-22-5480-01 1 12921409 12921409 C T PRAMEF2 Silent p.H400H 0.26 TCGA-22-5480-01 1 150601605 150601605 C A ENSA Intron 0.23 TCGA-22-5480-01 1 152127903 152127903 G C RPTN Missense_Mutation p.H558D 0.19 deleterious(0.01) possibly_damaging(0.641) TCGA-22-5480-01 1 156713222 156713222 C A HDGF 3'UTR 0.62 TCGA-22-5480-01 1 158632635 158632635 C A SPTA1 Missense_Mutation p.R774L 0.12 deleterious(0.03) possibly_damaging(0.557) TCGA-22-5480-01 1 159275988 159275988 G T FCER1A Missense_Mutation p.W181L 0.54 tolerated(0.86) benign(0.114) TCGA-22-5480-01 1 159275989 159275989 G T FCER1A Missense_Mutation p.W181C 0.56 tolerated(0.2) possibly_damaging(0.814) TCGA-22-5480-01 1 159277608 159277608 A G FCER1A Silent p.T220T 0.19 TCGA-22-5480-01 1 160064847 160064847 T A IGSF8 Missense_Mutation p.Q85L 0.62 tolerated(0.3) benign(0.09) TCGA-22-5480-01 1 197411333 197411333 T C CRB1 Missense_Mutation p.C1306R 0.50 deleterious(0) probably_damaging(0.991) TCGA-22-5480-01 1 201008840 201008840 C A CACNA1S 3'UTR 0.45 TCGA-22-5480-01 1 202128422 202128422 G A PTPN7 Nonsense_Mutation p.R142* 0.16 TCGA-22-5480-01 1 235345290 235345290 C A ARID4B Missense_Mutation p.V982L 0.19 tolerated_low_confidence(0.31) benign(0.002) TCGA-22-5480-01 1 70703197 70703197 G C SRSF11 Missense_Mutation p.R227P 0.26 deleterious(0) unknown(0) TCGA-22-5480-01 1 86961341 86961341 C A CLCA1 Missense_Mutation p.P699H 0.35 deleterious(0) possibly_damaging(0.717) TCGA-22-5480-01 20 1960819 1960819 G A PDYN 3'UTR 0.44 TCGA-22-5480-01 20 23065078 23065078 G T CD93 Missense_Mutation p.F584L 0.24 deleterious(0.01) possibly_damaging(0.808) TCGA-22-5480-01 20 33508829 33508829 T C ACSS2 Silent p.Y401Y 0.34 TCGA-22-5480-01 20 33657206 33657206 G A TRPC4AP Missense_Mutation p.P103S 0.32 tolerated(0.87) benign(0.004) TCGA-22-5480-01 20 42694617 42694617 C A TOX2 Missense_Mutation p.P409H 0.23 tolerated(0.16) possibly_damaging(0.906) TCGA-22-5480-01 20 58514346 58514346 C T PPP1R3D Missense_Mutation p.R214H 0.07 tolerated(0.12) benign(0.15) TCGA-22-5480-01 2 159481743 159481743 G C PKP4 Silent p.T319T 0.25 TCGA-22-5480-01 2 163099881 163099881 C A FAP 5'UTR 0.29 TCGA-22-5480-01 2 172337642 172337642 T C DCAF17 3'UTR 0.39 TCGA-22-5480-01 2 179446758 179446758 C G TTN Missense_Mutation p.R22113T 0.29 TCGA-22-5480-01 2 179569457 179569457 A G TTN Silent p.D9914D 0.42 TCGA-22-5480-01 2 179718286 179718286 G T CCDC141 Nonsense_Mutation p.C1042* 0.28 TCGA-22-5480-01 2 187693346 187693346 C A ZSWIM2 Missense_Mutation p.D423Y 0.43 deleterious(0) benign(0.115) TCGA-22-5480-01 2 198262836 198262836 C A SF3B1 Missense_Mutation p.A1047S 0.27 tolerated(0.27) benign(0.019) TCGA-22-5480-01 2 198361921 198361921 C G HSPD1 Missense_Mutation p.A124P 0.33 tolerated(0.21) probably_damaging(0.984) TCGA-22-5480-01 2 206023531 206023531 C T PARD3B Intron 0.34 TCGA-22-5480-01 2 230272008 230272008 C G DNER Missense_Mutation p.G555R 0.17 tolerated(0.09) possibly_damaging(0.534) TCGA-22-5480-01 2 39944267 39944267 C T TMEM178A Missense_Mutation p.S257F 0.50 deleterious(0) probably_damaging(0.999) TCGA-22-5480-01 2 40656327 40656327 C A SLC8A1 Missense_Mutation p.R365L 0.14 deleterious(0) probably_damaging(0.988) TCGA-22-5480-01 2 65541258 65541258 C G SPRED2 Missense_Mutation p.E212Q 0.36 deleterious(0.03) possibly_damaging(0.906) TCGA-22-5480-01 2 7027158 7027158 G A RSAD2 Missense_Mutation p.V201M 0.25 deleterious(0) possibly_damaging(0.489) TCGA-22-5480-01 2 85553695 85553695 G A TGOLN2 Missense_Mutation p.A387V 0.54 deleterious(0) possibly_damaging(0.866) TCGA-22-5480-01 3 100373989 100373989 C T GPR128 Missense_Mutation p.R564W 0.17 deleterious(0.02) possibly_damaging(0.806) TCGA-22-5480-01 3 108300348 108300348 C G KIAA1524 Missense_Mutation p.E155Q 0.12 tolerated(0.05) probably_damaging(0.986) TCGA-22-5480-01 3 112357186 112357186 C A CCDC80 Nonsense_Mutation p.E523* 0.28 TCGA-22-5480-01 3 124807181 124807181 A T SLC12A8 Missense_Mutation p.M652K 0.31 deleterious(0) benign(0.16) TCGA-22-5480-01 3 127379397 127379397 G C PODXL2 Missense_Mutation p.E176Q 0.21 tolerated(0.26) benign(0.025) TCGA-22-5480-01 3 138025270 138025270 G T NME9 Silent p.A110A 0.32 TCGA-22-5480-01 3 155545890 155545890 A G SLC33A1 3'UTR 0.29 TCGA-22-5480-01 3 160952598 160952598 A G NMD3 Silent p.V147V 0.20 TCGA-22-5480-01 3 165547449 165547449 C A BCHE Missense_Mutation p.W458L 0.14 deleterious(0) probably_damaging(0.997) TCGA-22-5480-01 3 170797378 170797378 T G TNIK Missense_Mutation p.D1126A 0.17 deleterious(0) probably_damaging(0.999) TCGA-22-5480-01 3 183910653 183910653 T A ABCF3 Missense_Mutation p.S573R 0.27 deleterious(0.02) possibly_damaging(0.77) TCGA-22-5480-01 3 184870445 184870445 T A C3orf70 Missense_Mutation p.H56L 0.50 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-22-5480-01 3 186971078 186971078 C T MASP1 Missense_Mutation p.G257E 0.28 deleterious(0) probably_damaging(0.996) TCGA-22-5480-01 3 188592312 188592312 A G LPP 3'UTR 0.11 TCGA-22-5480-01 3 196674943 196674943 C T PIGZ Silent p.T275T 0.24 TCGA-22-5480-01 3 46712441 46712441 C T ALS2CL 3'UTR 0.54 TCGA-22-5480-01 3 58279428 58279428 C T ABHD6 Missense_Mutation p.A317V 0.64 tolerated(0.06) possibly_damaging(0.896) TCGA-22-5480-01 3 96533582 96533582 G A EPHA6 Missense_Mutation p.G39R 0.20 deleterious_low_confidence(0) benign(0.013) TCGA-22-5480-01 4 102751013 102751013 G T BANK1 Missense_Mutation p.W40L 0.24 deleterious(0) probably_damaging(0.997) TCGA-22-5480-01 4 123107280 123107280 G T KIAA1109 Nonsense_Mutation p.E150* 0.35 TCGA-22-5480-01 4 125591992 125591992 C T ANKRD50 Missense_Mutation p.G814S 0.40 deleterious(0) probably_damaging(1) TCGA-22-5480-01 4 162307058 162307058 C G FSTL5 Silent p.R795R 0.24 TCGA-22-5480-01 4 170618424 170618424 C G CLCN3 Missense_Mutation p.P368A 0.41 deleterious(0) probably_damaging(0.994) TCGA-22-5480-01 4 44177020 44177020 T G KCTD8 Silent p.P403P 0.27 TCGA-22-5480-01 4 47428023 47428023 C T GABRB1 Silent p.Y471Y 0.35 TCGA-22-5480-01 4 52917863 52917863 A C SPATA18 5'UTR 0.22 TCGA-22-5480-01 4 67142637 67142637 G C MIR1269A RNA 0.35 TCGA-22-5480-01 4 79387483 79387483 G T FRAS1 Missense_Mutation p.R2384L 0.43 benign(0.055) TCGA-22-5480-01 4 87968236 87968236 A T AFF1 Missense_Mutation p.K183N 0.33 deleterious(0.03) possibly_damaging(0.547) TCGA-22-5480-01 5 100222203 100222203 C T ST8SIA4 Missense_Mutation p.R116Q 0.60 probably_damaging(0.968) TCGA-22-5480-01 5 128448670 128448670 G T ISOC1 Missense_Mutation p.E291D 0.66 tolerated(0.89) benign(0.001) TCGA-22-5480-01 5 135383035 135383035 G A TGFBI Missense_Mutation p.D233N 0.33 deleterious(0) probably_damaging(0.998) TCGA-22-5480-01 5 140175375 140175375 G T PCDHA2 Nonsense_Mutation p.E276* 0.71 TCGA-22-5480-01 5 140559232 140559232 C G PCDHB8 Silent p.S539S 0.32 TCGA-22-5480-01 5 140740790 140740790 G A PCDHGB2 Missense_Mutation p.G363E 0.68 deleterious(0.02) possibly_damaging(0.739) TCGA-22-5480-01 5 140793345 140793345 G A PCDHGA10 Silent p.E201E 0.46 TCGA-22-5480-01 5 35988549 35988549 T C UGT3A1 Intron 0.80 TCGA-22-5480-01 5 36301603 36301603 C G RANBP3L 5'UTR 0.26 TCGA-22-5480-01 5 58571197 58571197 G T PDE4D Intron 0.66 TCGA-22-5480-01 5 82948380 82948380 C T HAPLN1 Missense_Mutation p.A122T 0.14 deleterious(0) probably_damaging(0.927) TCGA-22-5480-01 5 89989783 89989783 G A GPR98 Missense_Mutation p.G2404S 0.19 probably_damaging(0.934) TCGA-22-5480-01 6 105233141 105233141 T A HACE1 Silent p.T376T 0.36 TCGA-22-5480-01 6 105609387 105609387 G A POPDC3 Missense_Mutation p.S133F 0.32 tolerated(0.08) probably_damaging(0.912) TCGA-22-5480-01 6 109802864 109802864 T A ZBTB24 Silent p.V122V 0.19 TCGA-22-5480-01 6 109996906 109996906 T C AK9 Missense_Mutation p.I15V 0.24 tolerated(0.28) benign(0.35) TCGA-22-5480-01 6 161015040 161015040 G C LPA Silent p.S1193S 0.39 TCGA-22-5480-01 6 28327755 28327755 C T ZKSCAN3 Missense_Mutation p.P131L 0.24 tolerated(0.46) possibly_damaging(0.871) TCGA-22-5480-01 6 29364842 29364842 G T OR12D2 Silent p.V122V 0.28 TCGA-22-5480-01 6 31854777 31854777 G A EHMT2 Silent p.L705L 0.06 TCGA-22-5480-01 6 32037465 32037465 G T TNXB Missense_Mutation p.Q1818K 0.56 benign(0.042) TCGA-22-5480-01 6 50683050 50683050 C G TFAP2D Silent p.P87P 0.31 TCGA-22-5480-01 6 57472357 57472357 A T PRIM2 Splice_Site 0.18 TCGA-22-5480-01 6 73904327 73904327 C A KCNQ5 Missense_Mutation p.S682R 0.30 tolerated(0.12) possibly_damaging(0.493) TCGA-22-5480-01 6 97247581 97247581 C A GPR63 Silent p.A9A 0.38 TCGA-22-5480-01 7 117828443 117828443 G T NAA38 Missense_Mutation p.V62L 0.18 tolerated(0.15) possibly_damaging(0.517) TCGA-22-5480-01 7 121011442 121011442 T C FAM3C Missense_Mutation p.K62E 0.46 deleterious(0.01) benign(0.171) TCGA-22-5480-01 7 134130009 134130009 T C AKR1B1 Missense_Mutation p.R297G 0.22 deleterious(0) possibly_damaging(0.898) TCGA-22-5480-01 7 134346768 134346768 A G BPGM Missense_Mutation p.N170S 0.38 tolerated(0.06) benign(0.023) TCGA-22-5480-01 7 138604053 138604053 G A KIAA1549 Missense_Mutation p.L107F 0.27 tolerated(0.11) possibly_damaging(0.736) TCGA-22-5480-01 7 143701563 143701563 G A OR6B1 Silent p.A158A 0.42 TCGA-22-5480-01 7 27183283 27183283 C A HOXA5 5'UTR 0.19 TCGA-22-5480-01 7 4901276 4901276 C T PAPOLB Missense_Mutation p.E55K 0.33 deleterious(0.05) probably_damaging(0.995) TCGA-22-5480-01 7 88963179 88963179 A G ZNF804B Missense_Mutation p.T295A 0.29 tolerated(0.55) benign(0.063) TCGA-22-5480-01 8 145763190 145763190 C T ARHGAP39 Silent p.Q843Q 0.19 TCGA-22-5480-01 8 22488075 22488075 G A BIN3 Silent p.A59A 0.31 TCGA-22-5480-01 8 25715978 25715978 G C EBF2 Missense_Mutation p.S462C 0.09 deleterious(0.04) benign(0.436) TCGA-22-5480-01 8 38162894 38162894 C A WHSC1L1 Missense_Mutation p.G771V 0.06 deleterious(0) probably_damaging(0.979) TCGA-22-5480-01 8 89128831 89128831 T C MMP16 Missense_Mutation p.T330A 0.33 tolerated(0.85) benign(0.031) TCGA-22-5480-01 9 100890886 100890886 T C CORO2A Intron 0.24 TCGA-22-5480-01 9 104432474 104432474 C A GRIN3A Missense_Mutation p.W740C 0.28 tolerated(0.19) benign(0.427) TCGA-22-5480-01 9 108483984 108483984 G A TMEM38B Missense_Mutation p.A146T 0.70 tolerated(0.09) benign(0.439) TCGA-22-5480-01 9 131019402 131019402 T C GOLGA2 Missense_Mutation p.I985V 0.65 tolerated(0.2) benign(0.101) TCGA-22-5480-01 9 43627249 43627249 A T SPATA31A6 Missense_Mutation p.S480T 0.29 tolerated(0.22) probably_damaging(0.925) TCGA-22-5480-01 9 84530564 84530564 C T SPATA31D5P RNA 0.29 TCGA-22-5480-01 9 90321440 90321440 C T DAPK1 Silent p.L1152L 0.58 TCGA-22-5480-01 X 101624598 101624598 C T NXF2B Missense_Mutation p.R98H 0.26 tolerated(1) benign(0) TCGA-22-5480-01 X 101818350 101818350 G T NXF4 RNA 0.32 TCGA-22-5480-01 X 104464700 104464700 G T TEX13A Silent p.R128R 0.58 TCGA-22-5480-01 X 119059053 119059053 A C NKAP 3'UTR 0.33 TCGA-22-5480-01 X 30873661 30873661 C T TAB3 Missense_Mutation p.A41T 0.29 deleterious(0.04) probably_damaging(0.998) TCGA-22-5480-01 X 70466473 70466473 G C ZMYM3 Missense_Mutation p.T795S 0.63 tolerated(0.98) benign(0) TCGA-22-5480-01 X 89177283 89177283 G - TGIF2LX Frame_Shift_Del p.D67Tfs*120 0.42 TCGA-22-5481-01 10 127422711 127422711 C A EDRF1 Missense_Mutation p.L486I 0.33 deleterious(0.03) probably_damaging(0.961) TCGA-22-5481-01 10 21940681 21940681 C A MLLT10 Missense_Mutation p.T260N 0.23 tolerated(0.09) probably_damaging(0.972) TCGA-22-5481-01 10 29820197 29820197 G C SVIL Missense_Mutation p.T677R 0.13 tolerated(0.39) benign(0.094) TCGA-22-5481-01 10 38241143 38241143 C A ZNF25 Missense_Mutation p.C428F 0.47 deleterious(0) probably_damaging(1) TCGA-22-5481-01 10 46998904 46998904 G T GPRIN2 Silent p.P8P 0.10 TCGA-22-5481-01 10 55626416 55626416 T A PCDH15 Nonsense_Mutation p.K1235* 0.51 TCGA-22-5481-01 10 55955619 55955619 C T PCDH15 Missense_Mutation p.A377T 0.25 tolerated(0.24) probably_damaging(0.96) TCGA-22-5481-01 10 72517980 72517980 G C ADAMTS14 Silent p.T1042T 0.50 TCGA-22-5481-01 10 87362142 87362142 C A GRID1 Missense_Mutation p.G973V 0.43 deleterious_low_confidence(0) probably_damaging(1) TCGA-22-5481-01 10 94836444 94836444 T C CYP26A1 Silent p.F381F 0.59 TCGA-22-5481-01 10 95791941 95791941 G T PLCE1 Nonsense_Mutation p.E380* 0.26 TCGA-22-5481-01 10 96073060 96073060 T G PLCE1 Missense_Mutation p.V2018G 0.24 deleterious(0) probably_damaging(0.982) TCGA-22-5481-01 11 119228523 119228523 C G USP2 Missense_Mutation p.R482T 0.32 deleterious(0) probably_damaging(0.963) TCGA-22-5481-01 11 123908933 123908933 A T OR10G7 Missense_Mutation p.L259Q 0.65 deleterious(0) probably_damaging(1) TCGA-22-5481-01 11 123909421 123909421 G T OR10G7 Nonsense_Mutation p.C96* 0.18 TCGA-22-5481-01 11 20676339 20676339 G T SLC6A5 Missense_Mutation p.M773I 0.37 deleterious(0.01) benign(0.118) TCGA-22-5481-01 11 27389745 27389745 T A LGR4 Missense_Mutation p.Y842F 0.65 tolerated(0.62) benign(0.315) TCGA-22-5481-01 11 47735886 47735886 G A AGBL2 Missense_Mutation p.P16L 0.24 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-22-5481-01 11 55890048 55890048 T A OR8H3 Missense_Mutation p.L67Q 0.25 deleterious(0) probably_damaging(0.994) TCGA-22-5481-01 11 56380486 56380486 G A OR5M1 Missense_Mutation p.H165Y 0.24 tolerated(0.08) possibly_damaging(0.723) TCGA-22-5481-01 11 56756501 56756501 C G OR5AK2 Missense_Mutation p.S38C 0.21 deleterious(0) possibly_damaging(0.896) TCGA-22-5481-01 11 57003529 57003529 C T APLNR Missense_Mutation p.R317H 0.32 deleterious(0) probably_damaging(0.999) TCGA-22-5481-01 11 58125825 58125825 C A OR5B17 Missense_Mutation p.G240C 0.70 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-22-5481-01 11 60201387 60201387 C A MS4A5 Missense_Mutation p.F163L 0.33 tolerated(0.32) benign(0.012) TCGA-22-5481-01 11 63072273 63072273 T C SLC22A10 Missense_Mutation p.F504L 0.51 tolerated(0.44) benign(0.02) TCGA-22-5481-01 11 76885812 76885812 G A MYO7A Missense_Mutation p.R649Q 0.38 deleterious(0) probably_damaging(0.998) TCGA-22-5481-01 11 96117918 96117918 T C CCDC82 5'UTR 0.36 TCGA-22-5481-01 12 102291658 102291658 C A DRAM1 Missense_Mutation p.P50H 0.20 deleterious(0) probably_damaging(0.999) TCGA-22-5481-01 12 120172156 120172156 C A CIT Nonsense_Mutation p.E1055* 0.21 TCGA-22-5481-01 12 120653455 120653455 G A PXN Intron 0.33 TCGA-22-5481-01 12 12630803 12630803 T G DUSP16 Missense_Mutation p.E321A 0.22 tolerated(0.25) benign(0.004) TCGA-22-5481-01 12 13065431 13065431 G T GPRC5A Silent p.P344P 0.23 TCGA-22-5481-01 12 15822710 15822710 T A EPS8 Missense_Mutation p.D85V 0.09 deleterious(0) probably_damaging(0.961) TCGA-22-5481-01 12 30843452 30843452 C A IPO8 Silent p.V48V 0.43 TCGA-22-5481-01 12 58010607 58010607 C T ARHGEF25 Missense_Mutation p.P597L 0.30 tolerated_low_confidence(0.06) benign(0.008) TCGA-22-5481-01 12 6094283 6094283 G C VWF Missense_Mutation p.P2302A 0.12 tolerated(0.15) probably_damaging(0.945) TCGA-22-5481-01 12 63541409 63541409 G A AVPR1A Silent p.T329T 0.70 TCGA-22-5481-01 12 81102793 81102794 - C MYF6 3'UTR 0.50 TCGA-22-5481-01 12 91449774 91449774 G T KERA Silent p.T95T 0.24 TCGA-22-5481-01 13 101726921 101726921 G T NALCN Nonsense_Mutation p.Y1349* 0.26 TCGA-22-5481-01 13 109318423 109318423 C G MYO16 Missense_Mutation p.A51G 0.25 tolerated(1) benign(0.002) TCGA-22-5481-01 13 113761185 113761185 G C F7 Missense_Mutation p.E31Q 0.18 tolerated_low_confidence(0.67) benign(0.001) TCGA-22-5481-01 13 25073509 25073509 C T PARP4 Missense_Mutation p.G136D 0.36 tolerated(0.2) benign(0.028) TCGA-22-5481-01 13 39262924 39262924 A G FREM2 Silent p.L481L 0.38 TCGA-22-5481-01 13 39262980 39262980 G T FREM2 Missense_Mutation p.G500V 0.36 deleterious(0.01) benign(0.186) TCGA-22-5481-01 13 45725931 45725931 G A GTF2F2 Missense_Mutation p.G90E 0.65 tolerated(0.07) probably_damaging(0.986) TCGA-22-5481-01 13 48919290 48919290 T A RB1 Nonsense_Mutation p.L152* 0.60 TCGA-22-5481-01 13 92051426 92051426 G T GPC5 Silent p.L42L 0.46 TCGA-22-5481-01 14 19571420 19571420 C A POTEG Splice_Site p.X399_splice 0.08 TCGA-22-5481-01 14 20296109 20296109 T A OR4N2 Missense_Mutation p.F168I 0.08 deleterious(0) probably_damaging(1) TCGA-22-5481-01 14 20768892 20768892 C A TTC5 Missense_Mutation p.E90D 0.15 tolerated(0.34) benign(0.012) TCGA-22-5481-01 14 22447187 22447187 G T TRAV8-6 Silent p.V56V 0.71 TCGA-22-5481-01 14 23884220 23884220 T A MYH7 Missense_Mutation p.K1848M 0.75 deleterious(0) probably_damaging(0.998) TCGA-22-5481-01 14 35227951 35227951 C T BAZ1A Missense_Mutation p.D1449N 0.43 deleterious(0.01) probably_damaging(0.989) TCGA-22-5481-01 14 38296572 38296572 G T TTC6 Splice_Site p.X1766_splice 0.37 TCGA-22-5481-01 14 38724396 38724396 C G CLEC14A Missense_Mutation p.E278Q 0.40 tolerated(0.6) benign(0.022) TCGA-22-5481-01 14 54417065 54417065 C A BMP4 Missense_Mutation p.K304N 0.61 tolerated(0.39) benign(0.011) TCGA-22-5481-01 14 67779283 67779283 G A MPP5 Missense_Mutation p.D361N 0.33 deleterious(0) probably_damaging(0.963) TCGA-22-5481-01 14 67826398 67826401 TCGG - ATP6V1D Frame_Shift_Del p.D5Efs*14 0.34 TCGA-22-5481-01 14 72055402 72055402 C G SIPA1L1 Missense_Mutation p.N271K 0.26 tolerated(0.85) benign(0.018) TCGA-22-5481-01 15 35167043 35167043 C A AQR Missense_Mutation p.R1087L 0.42 deleterious(0.04) possibly_damaging(0.839) TCGA-22-5481-01 15 48730109 48730109 G A FBN1 Nonsense_Mutation p.R2057* 0.06 TCGA-22-5481-01 15 49148229 49148229 A C SHC4 Missense_Mutation p.V388G 0.19 deleterious(0) benign(0.372) TCGA-22-5481-01 15 59752239 59752239 C G FAM81A Missense_Mutation p.T43S 0.45 deleterious(0.02) probably_damaging(0.998) TCGA-22-5481-01 15 71300896 71300896 G A LRRC49 Missense_Mutation p.E455K 0.23 deleterious(0.04) benign(0.287) TCGA-22-5481-01 15 75651466 75651466 C T MAN2C1 Missense_Mutation p.G709D 0.32 tolerated(0.06) benign(0.02) TCGA-22-5481-01 15 78640338 78640338 T C CRABP1 3'UTR 0.76 TCGA-22-5481-01 15 80263405 80263405 G T BCL2A1 Nonsense_Mutation p.C19* 0.69 TCGA-22-5481-01 15 85383953 85383953 G A ALPK3 Silent p.K683K 0.26 TCGA-22-5481-01 15 89401162 89401162 A T ACAN Silent p.I1782I 0.48 TCGA-22-5481-01 15 92459362 92459362 G A SLCO3A1 Missense_Mutation p.R107H 0.61 tolerated(0.1) probably_damaging(1) TCGA-22-5481-01 15 98984361 98984361 C T FAM169B Missense_Mutation p.R133H 0.12 tolerated(0.19) benign(0.002) TCGA-22-5481-01 16 14334446 14334446 A G MKL2 Intron 0.36 TCGA-22-5481-01 16 28618103 28618103 G C SULT1A1 Silent p.L191L 0.23 TCGA-22-5481-01 16 3306528 3306528 G C MEFV Missense_Mutation p.D20E 0.31 tolerated(0.12) probably_damaging(0.951) TCGA-22-5481-01 16 4815774 4815774 C A ZNF500 Missense_Mutation p.S69I 0.21 tolerated(0.25) possibly_damaging(0.761) TCGA-22-5481-01 16 57449110 57449110 T G CCL17 Missense_Mutation p.V63G 0.34 deleterious(0) probably_damaging(0.999) TCGA-22-5481-01 16 71606473 71606473 G T TAT Missense_Mutation p.A176D 0.79 deleterious(0) probably_damaging(0.979) TCGA-22-5481-01 17 10415190 10415190 C A MYH1 Missense_Mutation p.G461V 0.41 deleterious(0) probably_damaging(0.955) TCGA-22-5481-01 17 10427821 10427821 G A MYH2 Silent p.L1713L 0.30 TCGA-22-5481-01 17 27011926 27011926 C - SUPT6H Frame_Shift_Del p.H813Ifs*24 0.33 TCGA-22-5481-01 17 3144418 3144418 G T OR1D4 RNA 0.60 TCGA-22-5481-01 17 32905964 32905964 T A C17orf102 Silent p.A112A 0.33 TCGA-22-5481-01 17 34499234 34499234 G T TBC1D3B Missense_Mutation p.F159L 0.12 deleterious(0.04) benign(0.308) TCGA-22-5481-01 17 66873706 66873706 C T ABCA8 Missense_Mutation p.A1345T 0.25 tolerated(0.06) benign(0.379) TCGA-22-5481-01 17 72368180 72368180 G - GPR142 Frame_Shift_Del p.A278Pfs*6 0.18 TCGA-22-5481-01 17 73564852 73564852 G A LLGL2 Splice_Site p.X419_splice 0.54 TCGA-22-5481-01 17 74732315 74732322 CCTCTTGG - SRSF2 Frame_Shift_Del p.S196* 0.32 TCGA-22-5481-01 17 7577580 7577580 T C TP53 Missense_Mutation p.Y234C 0.77 deleterious(0) probably_damaging(0.992) TCGA-22-5481-01 17 79650809 79650809 C G ARL16 Missense_Mutation p.R16P 0.18 deleterious_low_confidence(0.03) possibly_damaging(0.532) TCGA-22-5481-01 17 9694449 9694449 C A DHRS7C Missense_Mutation p.K51N 0.60 tolerated(0.05) benign(0.019) TCGA-22-5481-01 18 11897068 11897069 - T MPPE1 Frame_Shift_Ins p.R66Tfs*2 0.24 TCGA-22-5481-01 18 14478724 14478724 G A CXADRP3 RNA 0.29 TCGA-22-5481-01 18 34359513 34359513 G A FHOD3 3'UTR 0.34 TCGA-22-5481-01 18 43668198 43668198 T C ATP5A1 Missense_Mutation p.I226V 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.507) TCGA-22-5481-01 18 56586234 56586234 G A ZNF532 Missense_Mutation p.V239I 0.20 tolerated(0.24) benign(0.009) TCGA-22-5481-01 18 56819825 56819825 G T SEC11C Silent p.R85R 0.22 TCGA-22-5481-01 18 59932002 59932007 ACTTCA - KIAA1468 In_Frame_Del p.S851_T852del 0.16 TCGA-22-5481-01 18 66504355 66504355 G T CCDC102B Nonsense_Mutation p.E119* 0.42 TCGA-22-5481-01 18 76753157 76753157 C T SALL3 Missense_Mutation p.P389L 0.47 deleterious(0) probably_damaging(0.999) TCGA-22-5481-01 18 77171088 77171088 C T NFATC1 Silent p.N258N 0.24 TCGA-22-5481-01 19 12491334 12491334 T A CTD-3105H18.14 3'UTR 0.28 TCGA-22-5481-01 19 13988139 13988139 C G NANOS3 Missense_Mutation p.P26R 0.15 tolerated(0.2) benign(0.112) TCGA-22-5481-01 19 15484716 15484716 T C AKAP8 Silent p.P84P 0.12 TCGA-22-5481-01 19 17339765 17339765 G A OCEL1 3'UTR 0.16 TCGA-22-5481-01 19 18499608 18499608 C G GDF15 Missense_Mutation p.L264V 0.14 tolerated(0.05) probably_damaging(0.996) TCGA-22-5481-01 19 19738025 19738025 C A LPAR2 Missense_Mutation p.E23D 0.43 tolerated(0.54) benign(0.009) TCGA-22-5481-01 19 21133034 21133034 G A ZNF85 Missense_Mutation p.D572N 0.28 deleterious(0.01) benign(0.008) TCGA-22-5481-01 19 22364255 22364255 C G ZNF676 Silent p.V88V 0.14 TCGA-22-5481-01 19 22941554 22941554 T A ZNF99 Missense_Mutation p.K386I 0.18 tolerated(0.21) probably_damaging(0.926) TCGA-22-5481-01 19 23542458 23542458 C T ZNF91 Missense_Mutation p.C1108Y 0.17 deleterious(0.01) probably_damaging(1) TCGA-22-5481-01 19 33130151 33130151 C A ANKRD27 Intron 0.19 TCGA-22-5481-01 19 33696371 33696371 G C LRP3 Missense_Mutation p.R232P 0.60 tolerated(0.21) probably_damaging(0.977) TCGA-22-5481-01 19 35850356 35850356 G T FFAR3 Missense_Mutation p.M188I 0.15 tolerated(0.15) benign(0.001) TCGA-22-5481-01 19 36109535 36109535 T G HAUS5 Missense_Mutation p.V317G 0.07 tolerated(0.32) benign(0.234) TCGA-22-5481-01 19 37676701 37676701 A T ZNF585B Missense_Mutation p.C580S 0.42 deleterious(0) probably_damaging(0.999) TCGA-22-5481-01 19 38572479 38572479 G T SIPA1L3 Missense_Mutation p.A92S 0.09 tolerated(0.58) benign(0.017) TCGA-22-5481-01 19 38572882 38572882 G C SIPA1L3 Missense_Mutation p.R226P 0.07 deleterious(0) possibly_damaging(0.839) TCGA-22-5481-01 19 38865572 38865572 A G PSMD8 Missense_Mutation p.K111E 0.73 tolerated(0.11) benign(0.119) TCGA-22-5481-01 19 38974118 38974118 G C RYR1 Silent p.P1632P 0.10 TCGA-22-5481-01 19 39760561 39760561 C T IFNL2 Missense_Mutation p.P171S 0.26 tolerated(0.18) benign(0.399) TCGA-22-5481-01 19 39964103 39964103 A T SUPT5H Missense_Mutation p.S812C 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-22-5481-01 19 39964104 39964104 G A SUPT5H Missense_Mutation p.S812N 0.18 tolerated(0.05) possibly_damaging(0.631) TCGA-22-5481-01 19 40521259 40521259 A G ZNF546 Missense_Mutation p.I694M 0.04 deleterious(0.01) benign(0.308) TCGA-22-5481-01 19 41512925 41512925 C - CYP2B6 Frame_Shift_Del p.L201Cfs*24 0.17 TCGA-22-5481-01 19 42125582 42125582 C T CEACAM4 3'UTR 0.71 TCGA-22-5481-01 19 42301751 42301751 G C CEACAM3 Missense_Mutation p.E99Q 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-22-5481-01 19 43920369 43920369 G C TEX101 Missense_Mutation p.Q79H 0.43 deleterious(0) possibly_damaging(0.861) TCGA-22-5481-01 19 46387577 46387577 C G IRF2BP1 Missense_Mutation p.V486L 0.11 tolerated(0.32) benign(0) TCGA-22-5481-01 19 46393721 46393721 C - MYPOP 3'UTR 0.31 TCGA-22-5481-01 19 49993906 49993906 C G RPL13A Intron 0.09 TCGA-22-5481-01 19 50735290 50735290 G T MYH14 Silent p.S359S 0.24 TCGA-22-5481-01 19 51875538 51875538 A T NKG7 Missense_Mutation p.F61I 0.21 deleterious(0) probably_damaging(0.987) TCGA-22-5481-01 19 53884884 53884884 G T ZNF525 Missense_Mutation p.G351V 0.63 deleterious(0) probably_damaging(0.942) TCGA-22-5481-01 19 55449432 55449432 G T NLRP7 Silent p.T703T 0.51 TCGA-22-5481-01 19 55831500 55831500 G C TMEM150B Silent p.L77L 0.15 TCGA-22-5481-01 19 57089313 57089313 G A ZNF470 Missense_Mutation p.E506K 0.17 deleterious(0) probably_damaging(0.996) TCGA-22-5481-01 19 57743476 57743476 T A AURKC Silent p.A60A 0.15 TCGA-22-5481-01 19 57839444 57839444 G T ZNF543 Missense_Mutation p.G205V 0.26 deleterious(0) probably_damaging(0.958) TCGA-22-5481-01 19 57839445 57839445 G T ZNF543 Silent p.G205G 0.26 TCGA-22-5481-01 19 57984646 57984646 G A ZNF772 Missense_Mutation p.P489L 0.17 deleterious(0) probably_damaging(0.999) TCGA-22-5481-01 19 58059186 58059186 C T ZNF550 Silent p.P101P 0.46 TCGA-22-5481-01 19 58695355 58695355 C G ZNF274 Missense_Mutation p.A8G 0.50 tolerated(0.09) benign(0.016) TCGA-22-5481-01 1 101361840 101361840 G C SLC30A7 Missense_Mutation p.D8H 0.31 deleterious(0.01) probably_damaging(0.982) TCGA-22-5481-01 1 10179648 10179648 A G UBE4B Silent p.L472L 0.45 TCGA-22-5481-01 1 104234117 104234117 C T AMY1B Missense_Mutation p.D332N 0.09 tolerated(0.34) benign(0.102) TCGA-22-5481-01 1 109742723 109742723 G T KIAA1324 Missense_Mutation p.G891C 0.54 deleterious(0) probably_damaging(1) TCGA-22-5481-01 1 11595683 11595684 - C PTCHD2 Frame_Shift_Ins p.H1269Pfs*115 0.30 TCGA-22-5481-01 1 118533514 118533514 C T SPAG17 Missense_Mutation p.E1831K 0.14 deleterious(0.03) probably_damaging(0.981) TCGA-22-5481-01 1 144930922 144930922 T C PDE4DIP Intron 0.22 TCGA-22-5481-01 1 146658532 146658532 C G FMO5 Missense_Mutation p.G517R 0.31 tolerated(0.39) benign(0.006) TCGA-22-5481-01 1 152188962 152188962 G T HRNR Missense_Mutation p.R1715S 0.22 unknown(0) TCGA-22-5481-01 1 153066191 153066191 G T SPRR2E Missense_Mutation p.Q13K 0.30 tolerated_low_confidence(0.61) unknown(0) TCGA-22-5481-01 1 153719806 153719806 G T INTS3 Missense_Mutation p.G162C 0.25 tolerated(0.07) probably_damaging(0.964) TCGA-22-5481-01 1 155207366 155207366 G C GBA Missense_Mutation p.F255L 0.40 deleterious(0) probably_damaging(0.998) TCGA-22-5481-01 1 155629519 155629519 G T YY1AP1 Missense_Mutation p.P866T 0.16 deleterious_low_confidence(0.01) benign(0.287) TCGA-22-5481-01 1 156051391 156051391 C G MEX3A Silent p.T133T 0.33 TCGA-22-5481-01 1 162740302 162740302 G A DDR2 Missense_Mutation p.G502S 0.40 tolerated(0.23) benign(0.006) TCGA-22-5481-01 1 172437652 172437652 C G C1orf105 Missense_Mutation p.T157R 0.17 deleterious(0) benign(0.024) TCGA-22-5481-01 1 173516842 173516842 C G SLC9C2 Missense_Mutation p.A515P 0.31 tolerated(0.12) probably_damaging(0.983) TCGA-22-5481-01 1 175355405 175355405 C A TNR Missense_Mutation p.D514Y 0.35 deleterious(0) probably_damaging(1) TCGA-22-5481-01 1 178863059 178863064 CAGAAT - RALGPS2 In_Frame_Del p.S446_E447del 0.19 TCGA-22-5481-01 1 182847246 182847246 G T DHX9 Silent p.G763G 0.17 TCGA-22-5481-01 1 183105530 183105530 G T LAMC1 Missense_Mutation p.R1375M 0.21 deleterious(0.01) benign(0.429) TCGA-22-5481-01 1 19490919 19490919 C T UBR4 Missense_Mutation p.V1510M 0.22 probably_damaging(0.983) TCGA-22-5481-01 1 197390519 197390519 G T CRB1 Missense_Mutation p.A521S 0.37 deleterious(0.03) benign(0.262) TCGA-22-5481-01 1 201844292 201844292 A T IPO9 Missense_Mutation p.Y984F 0.16 tolerated(0.7) benign(0.004) TCGA-22-5481-01 1 203029424 203029424 C T PPFIA4 Missense_Mutation p.S382L 0.38 deleterious(0) probably_damaging(0.991) TCGA-22-5481-01 1 203029425 203029425 G C PPFIA4 Silent p.S382S 0.38 TCGA-22-5481-01 1 203148532 203148532 C T CHI3L1 3'UTR 0.46 TCGA-22-5481-01 1 206658563 206658563 T C IKBKE Silent p.N512N 0.12 TCGA-22-5481-01 1 206760218 206760218 C T RASSF5 Nonsense_Mutation p.Q389* 0.49 TCGA-22-5481-01 1 216251630 216251630 C G USH2A Silent p.L1791L 0.15 TCGA-22-5481-01 1 216373351 216373351 T C USH2A Silent p.T1143T 0.14 TCGA-22-5481-01 1 216496922 216496922 C A USH2A Missense_Mutation p.A482S 0.18 probably_damaging(1) TCGA-22-5481-01 1 22188500 22188500 G C HSPG2 Missense_Mutation p.L1617V 0.37 probably_damaging(0.987) TCGA-22-5481-01 1 222826624 222826624 G C MIA3 Missense_Mutation p.E1422Q 0.50 deleterious(0) benign(0.338) TCGA-22-5481-01 1 240071533 240071533 G A CHRM3 Missense_Mutation p.R261H 0.15 deleterious(0) probably_damaging(0.965) TCGA-22-5481-01 1 247835934 247835934 A T OR13G1 Missense_Mutation p.M137K 0.34 deleterious(0) benign(0.055) TCGA-22-5481-01 1 32150139 32150139 C T COL16A1 Silent p.G715G 0.39 TCGA-22-5481-01 1 36564526 36564526 A G COL8A2 Silent p.G252G 0.40 TCGA-22-5481-01 1 3673343 3673343 G A CCDC27 Silent p.L200L 0.45 TCGA-22-5481-01 1 44442840 44442840 C A ATP6V0B Silent p.I181I 0.63 TCGA-22-5481-01 1 44595688 44595688 C T KLF17 Missense_Mutation p.P249S 0.42 tolerated(0.33) benign(0.104) TCGA-22-5481-01 1 46976908 46976908 G T DMBX1 Missense_Mutation p.G212V 0.50 tolerated(0.11) benign(0.132) TCGA-22-5481-01 1 51735666 51735666 C G RNF11 Missense_Mutation p.S54R 0.19 tolerated(0.12) benign(0.284) TCGA-22-5481-01 1 67592893 67592893 C T C1orf141 Missense_Mutation p.V11I 0.22 tolerated(1) possibly_damaging(0.893) TCGA-22-5481-01 1 70225864 70225864 G A LRRC7 5'UTR 0.15 TCGA-22-5481-01 1 7724465 7724465 G A CAMTA1 Missense_Mutation p.D620N 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.772) TCGA-22-5481-01 20 10277593 10277593 A T SNAP25 Missense_Mutation p.Y101F 0.40 tolerated(0.13) probably_damaging(0.945) TCGA-22-5481-01 20 20037266 20037267 - T C20orf26 5'UTR 0.20 TCGA-22-5481-01 20 239915 239915 G C DEFB132 Missense_Mutation p.D86H 0.17 tolerated(0.07) benign(0.055) TCGA-22-5481-01 20 2844645 2844645 G A VPS16 Silent p.Q509Q 0.19 TCGA-22-5481-01 20 2845106 2845106 C A VPS16 Missense_Mutation p.Q606K 0.40 tolerated(0.62) possibly_damaging(0.487) TCGA-22-5481-01 20 33575964 33575964 A C MYH7B Missense_Mutation p.M538L 0.35 possibly_damaging(0.551) TCGA-22-5481-01 20 44598107 44598107 C A ZNF335 Missense_Mutation p.G142V 0.46 deleterious(0) probably_damaging(0.999) TCGA-22-5481-01 20 47324864 47324864 C A PREX1 Missense_Mutation p.E239D 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-22-5481-01 20 47628533 47628533 T A ARFGEF2 Missense_Mutation p.F1277Y 0.23 deleterious(0.04) benign(0.41) TCGA-22-5481-01 20 55941926 55941926 G A RAE1 Missense_Mutation p.G147R 0.13 deleterious(0) possibly_damaging(0.763) TCGA-22-5481-01 20 60886105 60886105 G T LAMA5 Silent p.L3378L 0.32 TCGA-22-5481-01 20 61834294 61834294 T A YTHDF1 Missense_Mutation p.N333I 0.27 deleterious(0.02) possibly_damaging(0.786) TCGA-22-5481-01 20 62073817 62073817 G T KCNQ2 Missense_Mutation p.A253E 0.49 deleterious(0.01) possibly_damaging(0.474) TCGA-22-5481-01 21 14983023 14983023 C T POTED Silent p.I158I 0.64 TCGA-22-5481-01 21 39755307 39755307 A T ERG 3'UTR 0.67 TCGA-22-5481-01 22 17447059 17447066 GGTGCATA - GAB4 Frame_Shift_Del p.M405Rfs*7 0.18 TCGA-22-5481-01 22 30660278 30660278 G A OSM Missense_Mutation p.P118L 0.21 tolerated(0.54) benign(0.287) TCGA-22-5481-01 22 37469672 37469672 T A TMPRSS6 Silent p.T494T 0.17 TCGA-22-5481-01 22 37696975 37696975 G C CYTH4 Silent p.P154P 0.12 TCGA-22-5481-01 22 41660676 41660676 C T RANGAP1 Missense_Mutation p.G158S 0.29 deleterious(0.03) possibly_damaging(0.568) TCGA-22-5481-01 22 44696821 44696821 G A KIAA1644 Missense_Mutation p.T2I 0.19 deleterious_low_confidence(0.04) probably_damaging(0.991) TCGA-22-5481-01 2 110901134 110901134 G A NPHP1 Missense_Mutation p.S561L 0.51 tolerated(0.11) possibly_damaging(0.687) TCGA-22-5481-01 2 112767595 112767595 G C MERTK Silent p.G677G 0.22 TCGA-22-5481-01 2 116101430 116101430 G C DPP10 Missense_Mutation p.L75F 0.16 deleterious(0.01) benign(0.052) TCGA-22-5481-01 2 116101431 116101431 G T DPP10 Nonsense_Mutation p.E76* 0.16 TCGA-22-5481-01 2 119739233 119739233 G T MARCO Splice_Site p.X301_splice 0.25 TCGA-22-5481-01 2 127451467 127451467 C A GYPC Missense_Mutation p.P45Q 0.27 deleterious(0) benign(0.338) TCGA-22-5481-01 2 130869657 130869657 C A POTEF Silent p.L276L 0.38 TCGA-22-5481-01 2 132240475 132240475 T C TUBA3D 3'UTR 0.20 TCGA-22-5481-01 2 153514465 153514465 T C PRPF40A Missense_Mutation p.R880G 0.53 deleterious(0) unknown(0) TCGA-22-5481-01 2 168100416 168100416 C A XIRP2 Silent p.V838V 0.57 TCGA-22-5481-01 2 17697163 17697163 T C RAD51AP2 Silent p.T840T 0.43 TCGA-22-5481-01 2 179664355 179664355 G A TTN Missense_Mutation p.P258L 0.24 TCGA-22-5481-01 2 183601002 183601002 G A DNAJC10 Missense_Mutation p.M292I 0.24 tolerated(0.43) benign(0.001) TCGA-22-5481-01 2 207174674 207174674 A T ZDBF2 Missense_Mutation p.I1808L 0.19 tolerated(0.19) benign(0.031) TCGA-22-5481-01 2 209180071 209180071 A G PIKFYVE Missense_Mutation p.I661V 0.41 tolerated(0.08) benign(0.045) TCGA-22-5481-01 2 211464177 211464177 A T CPS1 Missense_Mutation p.T487S 0.45 tolerated(0.1) benign(0.001) TCGA-22-5481-01 2 219114186 219114186 A T ARPC2 Missense_Mutation p.K259M 0.33 deleterious(0) probably_damaging(0.999) TCGA-22-5481-01 2 219884263 219884263 G - CCDC108 Frame_Shift_Del p.C1147Vfs*13 0.23 TCGA-22-5481-01 2 225666699 225666699 T C DOCK10 Missense_Mutation p.I1443V 0.58 tolerated(0.59) possibly_damaging(0.854) TCGA-22-5481-01 2 228882920 228882920 G T SPHKAP Missense_Mutation p.Q884K 0.26 deleterious(0.04) benign(0.245) TCGA-22-5481-01 2 231405651 231405651 C A SP100 Missense_Mutation p.S757R 0.27 deleterious(0.03) possibly_damaging(0.504) TCGA-22-5481-01 2 234457833 234457833 C A USP40 Missense_Mutation p.V306F 0.38 deleterious(0) probably_damaging(0.993) TCGA-22-5481-01 2 28464226 28464226 G A BRE Missense_Mutation p.E273K 0.38 deleterious(0.01) benign(0.311) TCGA-22-5481-01 2 37230812 37230812 C G HEATR5B Missense_Mutation p.L1641F 0.25 deleterious(0) probably_damaging(0.997) TCGA-22-5481-01 2 38301513 38301513 T G CYP1B1 Missense_Mutation p.Q340P 0.17 deleterious(0.05) probably_damaging(0.994) TCGA-22-5481-01 2 50280683 50280683 C A NRXN1 Missense_Mutation p.G1325V 0.30 deleterious(0) probably_damaging(0.999) TCGA-22-5481-01 2 64117313 64117313 A C UGP2 Silent p.S471S 0.32 TCGA-22-5481-01 2 71649994 71649994 C T ZNF638 Missense_Mutation p.T1117I 0.57 deleterious(0) benign(0.103) TCGA-22-5481-01 2 74699522 74699522 C G MRPL53 Missense_Mutation p.R56S 0.25 deleterious(0.01) possibly_damaging(0.876) TCGA-22-5481-01 2 79363863 79363863 A G REG1P RNA 0.50 TCGA-22-5481-01 2 89161532 89161532 C G IGKC 5'Flank 0.32 TCGA-22-5481-01 2 90198998 90198998 C A IGKV1D-12 Missense_Mutation p.S53R 0.26 tolerated(0.06) benign(0.015) TCGA-22-5481-01 2 9572691 9572691 C T CPSF3 Silent p.S131S 0.23 TCGA-22-5481-01 3 108270132 108270132 T C KIAA1524 Missense_Mutation p.E861G 0.64 deleterious(0) benign(0.273) TCGA-22-5481-01 3 108682389 108682389 C A MORC1 Missense_Mutation p.D891Y 0.15 deleterious(0) possibly_damaging(0.907) TCGA-22-5481-01 3 121208303 121208303 T C POLQ Missense_Mutation p.R1159G 0.30 tolerated_low_confidence(0.12) benign(0.004) TCGA-22-5481-01 3 122003780 122003780 G A CASR Silent p.T1003T 0.14 TCGA-22-5481-01 3 126733386 126733386 C T PLXNA1 Silent p.G890G 0.23 TCGA-22-5481-01 3 134825293 134825293 G A EPHB1 Missense_Mutation p.C270Y 0.32 deleterious(0) probably_damaging(0.968) TCGA-22-5481-01 3 154147454 154147454 C - GPR149 5'UTR 0.17 TCGA-22-5481-01 3 160155799 160155799 A T TRIM59 Nonsense_Mutation p.Y391* 0.40 TCGA-22-5481-01 3 180325641 180325641 A G TTC14 Intron 0.25 TCGA-22-5481-01 3 183859765 183859765 G A EIF2B5 Silent p.A403A 0.45 TCGA-22-5481-01 3 50325694 50325694 G T IFRD2 Nonsense_Mutation p.Y483* 0.70 TCGA-22-5481-01 3 58519271 58519271 G T ACOX2 Missense_Mutation p.L162I 0.71 tolerated(0.22) probably_damaging(1) TCGA-22-5481-01 3 73432565 73432565 G C PDZRN3 Missense_Mutation p.P1051R 0.27 deleterious(0) probably_damaging(0.994) TCGA-22-5481-01 3 77089798 77089798 G A ROBO2 Intron 0.45 TCGA-22-5481-01 3 9798558 9798558 A T OGG1 Intron 0.32 TCGA-22-5481-01 3 98109632 98109632 G T OR5K3 Silent p.G41G 0.22 TCGA-22-5481-01 4 100434348 100434348 G A C4orf17 Missense_Mutation p.R37K 0.34 deleterious(0.02) probably_damaging(0.982) TCGA-22-5481-01 4 100784957 100784957 A G DAPP1 Missense_Mutation p.T211A 0.23 tolerated(0.32) benign(0.062) TCGA-22-5481-01 4 1017431 1017431 G A FGFRL1 Missense_Mutation p.D119N 0.42 tolerated(0.13) benign(0.038) TCGA-22-5481-01 4 108817000 108817000 C T SGMS2 Silent p.I97I 0.29 TCGA-22-5481-01 4 110737430 110737430 G T GAR1 Missense_Mutation p.G37V 0.56 tolerated_low_confidence(0.19) unknown(0) TCGA-22-5481-01 4 119256644 119256644 C A PRSS12 Silent p.T268T 0.51 TCGA-22-5481-01 4 122599650 122599650 C T ANXA5 Splice_Site p.X132_splice 0.10 TCGA-22-5481-01 4 126370644 126370644 G T FAT4 Missense_Mutation p.G2825W 0.29 probably_damaging(1) TCGA-22-5481-01 4 146080568 146080568 T C OTUD4 Intron 0.23 TCGA-22-5481-01 4 164272598 164272598 T A NPY5R Silent p.T391T 0.14 TCGA-22-5481-01 4 16504405 16504405 T G LDB2 Missense_Mutation p.Y328S 0.24 tolerated(0.07) benign(0.311) TCGA-22-5481-01 4 17493922 17493922 G A QDPR Missense_Mutation p.L160F 0.38 deleterious(0) probably_damaging(1) TCGA-22-5481-01 4 38798893 38798893 T A TLR1 Missense_Mutation p.K520N 0.24 tolerated(0.64) benign(0.001) TCGA-22-5481-01 4 38800444 38800444 G A TLR1 Silent p.S3S 0.32 TCGA-22-5481-01 4 47886384 47886384 G A NFXL1 Missense_Mutation p.P632L 0.31 deleterious(0.05) benign(0.32) TCGA-22-5481-01 4 517414 517414 A G PIGG Missense_Mutation p.Y594C 0.51 tolerated(1) benign(0.002) TCGA-22-5481-01 4 6596433 6596433 A G MAN2B2 Missense_Mutation p.H344R 0.67 deleterious(0.02) possibly_damaging(0.493) TCGA-22-5481-01 4 7056134 7056134 G T TADA2B Missense_Mutation p.V206L 0.45 deleterious(0.01) benign(0.092) TCGA-22-5481-01 4 71275410 71275410 C A PROL1 Missense_Mutation p.P122H 0.32 tolerated_low_confidence(0.47) possibly_damaging(0.629) TCGA-22-5481-01 4 71275672 71275672 C T PROL1 Silent p.A209A 0.39 TCGA-22-5481-01 4 71507832 71507832 A G ENAM Missense_Mutation p.E230G 0.13 deleterious(0) possibly_damaging(0.885) TCGA-22-5481-01 4 76956489 76956489 G C CXCL11 Missense_Mutation p.P23R 0.31 tolerated(0.07) possibly_damaging(0.787) TCGA-22-5481-01 4 89702371 89702371 C T FAM13A Missense_Mutation p.R468H 0.10 tolerated(0.08) benign(0.049) TCGA-22-5481-01 5 11159746 11159746 C T CTNND2 Missense_Mutation p.D701N 0.44 deleterious(0.03) benign(0.041) TCGA-22-5481-01 5 115320390 115320390 C T AQPEP Missense_Mutation p.T321I 0.48 tolerated(0.05) benign(0.35) TCGA-22-5481-01 5 128326122 128326124 GGA AGGG SLC27A6 Frame_Shift_Ins p.G312Rfs*12 0.13 TCGA-22-5481-01 5 131310483 131310483 G A ACSL6 Intron 0.22 TCGA-22-5481-01 5 13708415 13708415 T C DNAH5 Silent p.P4385P 0.35 TCGA-22-5481-01 5 140027490 140027490 C G IK 5'UTR 0.58 TCGA-22-5481-01 5 140230458 140230458 C G PCDHA9 Nonsense_Mutation p.S793* 0.48 TCGA-22-5481-01 5 140251063 140251063 C A PCDHA11 Nonsense_Mutation p.S792* 0.38 TCGA-22-5481-01 5 140562237 140562237 G A PCDHB16 Missense_Mutation p.V35I 0.49 tolerated_low_confidence(0.15) benign(0.011) TCGA-22-5481-01 5 145610342 145610342 A T RBM27 Missense_Mutation p.S238C 0.21 deleterious(0) possibly_damaging(0.701) TCGA-22-5481-01 5 156908866 156908866 G C ADAM19 Missense_Mutation p.A879G 0.60 tolerated(0.39) benign(0.004) TCGA-22-5481-01 5 167517591 167517591 G T TENM2 Nonsense_Mutation p.E510* 0.23 TCGA-22-5481-01 5 170149773 170149773 G T KCNIP1 Missense_Mutation p.R139S 0.34 tolerated(0.34) benign(0.349) TCGA-22-5481-01 5 173316946 173316946 T A CPEB4 Silent p.I70I 0.21 TCGA-22-5481-01 5 176823775 176823775 A T SLC34A1 Missense_Mutation p.M406L 0.22 tolerated(0.2) benign(0.01) TCGA-22-5481-01 5 179546356 179546356 C T RASGEF1C Missense_Mutation p.M299I 0.47 deleterious(0.02) benign(0.25) TCGA-22-5481-01 5 23527257 23527257 C A PRDM9 Missense_Mutation p.T687K 0.28 deleterious(0) possibly_damaging(0.78) TCGA-22-5481-01 5 23527768 23527768 G A PRDM9 Silent p.E857E 0.21 TCGA-22-5481-01 5 32037385 32037385 A T PDZD2 Nonsense_Mutation p.K486* 0.21 TCGA-22-5481-01 5 41382359 41382359 C A PLCXD3 Missense_Mutation p.E127D 0.28 tolerated(0.18) benign(0.181) TCGA-22-5481-01 5 422892 422892 C T AHRR Missense_Mutation p.R168C 0.45 deleterious(0) probably_damaging(1) TCGA-22-5481-01 5 43294241 43294241 C A HMGCS1 Missense_Mutation p.G367V 0.40 deleterious(0) probably_damaging(1) TCGA-22-5481-01 5 5239839 5239839 G T ADAMTS16 Missense_Mutation p.R775L 0.29 tolerated(0.1) benign(0.235) TCGA-22-5481-01 5 55056104 55056104 A G DDX4 Silent p.R68R 0.26 TCGA-22-5481-01 5 61822051 61822051 A G IPO11 Missense_Mutation p.H700R 0.42 deleterious(0.01) possibly_damaging(0.615) TCGA-22-5481-01 5 63510297 63510297 A G RNF180 Missense_Mutation p.N382D 0.34 deleterious(0.02) benign(0.089) TCGA-22-5481-01 5 80600813 80600813 A C ZCCHC9 Silent p.L79L 0.19 TCGA-22-5481-01 5 95728670 95728670 C T PCSK1 3'UTR 0.25 TCGA-22-5481-01 6 133783539 133783539 G T EYA4 Missense_Mutation p.Q168H 0.65 deleterious(0) probably_damaging(0.993) TCGA-22-5481-01 6 138655182 138655182 A T KIAA1244 Missense_Mutation p.L1733F 0.12 deleterious(0) probably_damaging(0.912) TCGA-22-5481-01 6 151914325 151914325 C A CCDC170 Missense_Mutation p.D459E 0.34 tolerated(0.21) possibly_damaging(0.454) TCGA-22-5481-01 6 165715709 165715709 T A C6orf118 Silent p.G34G 0.30 TCGA-22-5481-01 6 26392785 26392785 G T BTN2A2 Missense_Mutation p.V388L 0.29 deleterious(0.02) possibly_damaging(0.785) TCGA-22-5481-01 6 31556423 31556423 T C LST1 Silent p.Y95Y 0.22 TCGA-22-5481-01 6 39874511 39874511 C G MOCS1 3'UTR 0.15 TCGA-22-5481-01 6 40360111 40360111 C T LRFN2 Silent p.P647P 0.27 TCGA-22-5481-01 6 43422195 43422195 G A DLK2 Missense_Mutation p.H32Y 0.46 tolerated(0.2) benign(0.104) TCGA-22-5481-01 6 73110427 73110427 C A RIMS1 3'Flank 0.39 TCGA-22-5481-01 6 79577217 79577217 A C IRAK1BP1 5'UTR 0.33 TCGA-22-5481-01 6 79577218 79577218 G T IRAK1BP1 5'UTR 0.33 TCGA-22-5481-01 6 85446918 85446918 T C TBX18 Missense_Mutation p.T437A 0.35 tolerated(0.16) probably_damaging(0.956) TCGA-22-5481-01 6 94120676 94120676 C A EPHA7 Missense_Mutation p.L125F 0.31 deleterious(0.02) probably_damaging(1) TCGA-22-5481-01 7 122757619 122757619 G C SLC13A1 Missense_Mutation p.S519C 0.32 tolerated(1) benign(0.033) TCGA-22-5481-01 7 132169712 132169712 G T PLXNA4 Intron 0.33 TCGA-22-5481-01 7 133933813 133933816 CATA - LRGUK Frame_Shift_Del p.P728Lfs*13 0.35 TCGA-22-5481-01 7 147675033 147675033 G C CNTNAP2 Missense_Mutation p.G779R 0.33 tolerated(0.07) benign(0.039) TCGA-22-5481-01 7 149983555 149983555 G C ACTR3C Missense_Mutation p.I124M 0.54 tolerated(0.07) benign(0.033) TCGA-22-5481-01 7 151877049 151877049 G A KMT2C Missense_Mutation p.P2438S 0.55 probably_damaging(0.999) TCGA-22-5481-01 7 19184698 19184698 C A FERD3L Missense_Mutation p.R96S 0.27 deleterious(0) possibly_damaging(0.844) TCGA-22-5481-01 7 31682953 31682953 G T CCDC129 Missense_Mutation p.A683S 0.39 tolerated(0.1) benign(0.01) TCGA-22-5481-01 7 36466549 36466549 G C ANLN Missense_Mutation p.S932T 0.31 deleterious(0.01) benign(0.027) TCGA-22-5481-01 7 42187905 42187905 T C GLI3 Missense_Mutation p.H96R 0.39 tolerated_low_confidence(0.07) probably_damaging(0.996) TCGA-22-5481-01 7 48314031 48314031 G A ABCA13 Missense_Mutation p.V1590I 0.27 benign(0.001) TCGA-22-5481-01 7 50534936 50534936 C T DDC Silent p.L406L 0.39 TCGA-22-5481-01 7 57188839 57188839 G A ZNF479 Nonsense_Mutation p.Q95* 0.14 TCGA-22-5481-01 7 62752558 62752558 C G ZNF733P RNA 0.18 TCGA-22-5481-01 8 105361776 105361776 A G DCSTAMP Silent p.P332P 0.72 TCGA-22-5481-01 8 110420366 110420366 G T PKHD1L1 Missense_Mutation p.L634F 0.68 tolerated(0.14) benign(0.019) TCGA-22-5481-01 8 113323228 113323228 C A CSMD3 Missense_Mutation p.A2622S 0.70 tolerated(0.74) benign(0.023) TCGA-22-5481-01 8 113960025 113960025 T G CSMD3 Missense_Mutation p.D501A 0.28 deleterious(0.03) benign(0.224) TCGA-22-5481-01 8 128429087 128429087 A T POU5F1B Missense_Mutation p.S326C 0.20 deleterious(0.02) possibly_damaging(0.471) TCGA-22-5481-01 8 144463997 144463997 C T RHPN1 Silent p.G552G 0.13 TCGA-22-5481-01 8 1998916 1998916 A G MYOM2 Silent p.R12R 0.47 TCGA-22-5481-01 8 27779133 27779133 C A SCARA5 Missense_Mutation p.D291Y 0.31 deleterious(0) probably_damaging(0.982) TCGA-22-5481-01 8 28209166 28209166 G C ZNF395 Missense_Mutation p.T360S 0.35 tolerated(0.67) benign(0.015) TCGA-22-5481-01 8 37686459 37686459 T G GPR124 Missense_Mutation p.L131R 0.43 deleterious(0) possibly_damaging(0.859) TCGA-22-5481-01 8 37686465 37686465 A G GPR124 Missense_Mutation p.E133G 0.44 deleterious(0.04) possibly_damaging(0.842) TCGA-22-5481-01 8 38677752 38677752 C A TACC1 Missense_Mutation p.N330K 0.44 tolerated(0.39) benign(0.009) TCGA-22-5481-01 8 39506029 39506029 G T ADAM18 Missense_Mutation p.D405Y 0.53 deleterious(0) probably_damaging(1) TCGA-22-5481-01 8 48839832 48839832 C G PRKDC Missense_Mutation p.D781H 0.42 benign(0.001) TCGA-22-5481-01 8 61137121 61137121 G A CA8 Silent p.C200C 0.50 TCGA-22-5481-01 8 62289212 62289212 C G CLVS1 Silent p.V168V 0.30 TCGA-22-5481-01 8 6377434 6377434 G C ANGPT2 Missense_Mutation p.T294R 0.07 tolerated(0.35) benign(0.23) TCGA-22-5481-01 8 70978652 70978652 G T PRDM14 Missense_Mutation p.P334H 0.20 deleterious(0) probably_damaging(1) TCGA-22-5481-01 8 77766145 77766145 C A ZFHX4 Missense_Mutation p.H2330N 0.14 probably_damaging(0.98) TCGA-22-5481-01 8 89128744 89128744 C G MMP16 Missense_Mutation p.V359L 0.14 deleterious(0) probably_damaging(0.996) TCGA-22-5481-01 9 125796810 125796810 G A GPR21 5'UTR 0.23 TCGA-22-5481-01 9 137703363 137703363 G T COL5A1 Missense_Mutation p.R1203L 0.76 unknown(0) TCGA-22-5481-01 9 20874684 20874684 G T FOCAD Missense_Mutation p.R732I 0.38 deleterious(0) possibly_damaging(0.901) TCGA-22-5481-01 9 21187532 21187532 G A IFNA4 5'UTR 0.38 TCGA-22-5481-01 9 27229255 27229255 T C TEK 3'UTR 0.23 TCGA-22-5481-01 9 32633429 32633429 T C TAF1L Missense_Mutation p.T717A 0.25 deleterious(0.02) benign(0.07) TCGA-22-5481-01 9 43627151 43627151 G T SPATA31A6 Silent p.S512S 0.78 TCGA-22-5481-01 9 79318945 79318945 T A PRUNE2 Missense_Mutation p.K2528N 0.38 tolerated(0.12) benign(0.147) TCGA-22-5481-01 X 117744240 117744240 C A DOCK11 Silent p.P985P 0.25 TCGA-22-5481-01 X 119037330 119037330 C A AKAP14 Silent p.I48I 0.18 TCGA-22-5481-01 X 119513325 119513325 C A ATP1B4 Intron 0.19 TCGA-22-5481-01 X 122799630 122799630 C G THOC2 Missense_Mutation p.A417P 0.38 deleterious(0.04) benign(0.001) TCGA-22-5481-01 X 123517732 123517733 CC TGTGTATATGATAG TENM1 In_Frame_Ins p.G2350delinsLSYTH 0.40 TCGA-22-5481-01 X 127185331 127185331 C G ACTRT1 Missense_Mutation p.K285N 0.45 deleterious(0.03) benign(0) TCGA-22-5481-01 X 129761964 129761964 T C ENOX2 Missense_Mutation p.I557V 0.26 tolerated(0.18) benign(0.015) TCGA-22-5481-01 X 139866397 139866397 C A CDR1 Missense_Mutation p.L45F 0.30 tolerated(1) possibly_damaging(0.765) TCGA-22-5481-01 X 146341192 146341192 G A MIR509-3 RNA 0.29 TCGA-22-5481-01 X 150891304 150891304 C A FATE1 3'UTR 0.42 TCGA-22-5481-01 X 151283815 151283815 C A RP11-1007I13.4 RNA 0.26 TCGA-22-5481-01 X 151562932 151562932 C A GABRA3 Intron 0.25 TCGA-22-5481-01 X 152710730 152710730 C A TREX2 Missense_Mutation p.L53F 0.11 tolerated(0.16) possibly_damaging(0.7) TCGA-22-5481-01 X 153533740 153533740 G T TKTL1 Missense_Mutation p.E73D 0.42 tolerated(0.45) benign(0.033) TCGA-22-5481-01 X 153579357 153579357 C A FLNA Missense_Mutation p.G2359V 0.44 deleterious(0.02) possibly_damaging(0.747) TCGA-22-5481-01 X 153587459 153587459 G A FLNA Missense_Mutation p.P1456L 0.47 deleterious(0.01) benign(0.067) TCGA-22-5481-01 X 154493552 154493552 G A RAB39B Nonsense_Mutation p.Q8* 0.50 TCGA-22-5481-01 X 1546874 1546874 G A ASMTL Missense_Mutation p.P217L 0.38 tolerated(0.09) benign(0.005) TCGA-22-5481-01 X 30849638 30849638 T C TAB3 Missense_Mutation p.Y682C 0.45 tolerated(0.06) possibly_damaging(0.599) TCGA-22-5481-01 X 72667179 72667179 C A CDX4 Silent p.G30G 0.50 TCGA-22-5481-01 X 73069096 73069096 T A XIST RNA 0.75 TCGA-22-5481-01 X 79698445 79698445 A G FAM46D Missense_Mutation p.K136R 0.62 deleterious(0.04) probably_damaging(1) TCGA-22-5482-01 10 102896674 102896674 T G TLX1 3'UTR 0.30 TCGA-22-5482-01 10 105138194 105138194 C G TAF5 Missense_Mutation p.Q334E 0.45 tolerated(0.13) benign(0.099) TCGA-22-5482-01 10 115380405 115380405 T G NRAP Missense_Mutation p.L944F 0.32 deleterious(0) probably_damaging(0.999) TCGA-22-5482-01 10 123263335 123263335 C G FGFR2 Missense_Mutation p.E471Q 0.07 tolerated(0.51) probably_damaging(0.985) TCGA-22-5482-01 10 131665464 131665464 G C EBF3 Missense_Mutation p.T318S 0.08 deleterious(0.03) possibly_damaging(0.77) TCGA-22-5482-01 10 54527877 54527877 G T MBL2 3'UTR 0.25 TCGA-22-5482-01 10 85982265 85982265 G T LRIT2 Missense_Mutation p.S355Y 0.34 tolerated(0.69) benign(0.169) TCGA-22-5482-01 10 86133468 86133468 C T CCSER2 Missense_Mutation p.S504F 0.08 deleterious(0) probably_damaging(0.999) TCGA-22-5482-01 10 98744528 98744528 A G C10orf12 Silent p.P1127P 0.18 TCGA-22-5482-01 11 124481559 124481559 G A PANX3 Missense_Mutation p.R36Q 0.69 deleterious(0.03) benign(0.01) TCGA-22-5482-01 11 5344882 5344882 A - OR51B2 Frame_Shift_Del p.Y216Ifs*3 0.40 TCGA-22-5482-01 11 55735795 55735795 G T OR10AG1 Missense_Mutation p.P49T 0.53 deleterious(0.01) probably_damaging(0.964) TCGA-22-5482-01 11 56757107 56757107 C T OR5AK2 Missense_Mutation p.T240I 0.65 deleterious(0) probably_damaging(0.981) TCGA-22-5482-01 11 64678310 64678310 G C ATG2A Missense_Mutation p.P528R 0.67 deleterious(0) possibly_damaging(0.694) TCGA-22-5482-01 11 64693371 64693371 C G PPP2R5B Missense_Mutation p.N55K 0.53 tolerated(0.44) benign(0) TCGA-22-5482-01 11 67017759 67017759 G A KDM2A Missense_Mutation p.R753H 0.47 deleterious(0.04) benign(0.374) TCGA-22-5482-01 11 9516304 9516304 C T ZNF143 Missense_Mutation p.H253Y 0.16 deleterious(0.04) possibly_damaging(0.655) TCGA-22-5482-01 12 104097022 104097022 A C STAB2 Silent p.R1271R 0.30 TCGA-22-5482-01 12 106740365 106740365 C A TCP11L2 3'UTR 0.21 TCGA-22-5482-01 12 14610203 14610203 C A ATF7IP Missense_Mutation p.P711Q 0.30 deleterious_low_confidence(0) unknown(0) TCGA-22-5482-01 12 49412616 49412616 C T PRKAG1 5'Flank 0.30 TCGA-22-5482-01 12 49434608 49434608 G C KMT2D Missense_Mutation p.H2315Q 0.15 probably_damaging(0.93) TCGA-22-5482-01 12 6979288 6979288 A G TPI1 Missense_Mutation p.I244V 0.36 deleterious(0.03) possibly_damaging(0.849) TCGA-22-5482-01 12 76791654 76791654 C A OSBPL8 Missense_Mutation p.W164C 0.37 deleterious(0) probably_damaging(1) TCGA-22-5482-01 12 78513708 78513708 C T NAV3 Silent p.A1244A 0.30 TCGA-22-5482-01 12 81545666 81545666 G T ACSS3 Missense_Mutation p.W322L 0.25 deleterious(0.03) possibly_damaging(0.556) TCGA-22-5482-01 13 113803804 113803804 G A F10 Silent p.E480E 0.18 TCGA-22-5482-01 13 20763463 20763463 C A GJB2 Silent p.T86T 0.11 TCGA-22-5482-01 13 74269769 74269769 C T KLF12 Nonsense_Mutation p.W356* 0.21 TCGA-22-5482-01 14 102507987 102507987 C T DYNC1H1 Silent p.H4006H 0.18 TCGA-22-5482-01 14 106791065 106791065 C A IGHV3-30 Silent p.T97T 0.28 TCGA-22-5482-01 14 107219081 107219081 C T IGHV3-74 Intron 0.12 TCGA-22-5482-01 14 24787592 24787592 T C ADCY4 3'UTR 0.56 TCGA-22-5482-01 14 58681996 58681996 G A ACTR10 Missense_Mutation p.V198M 0.07 tolerated(0.09) benign(0.257) TCGA-22-5482-01 14 60072158 60072158 C A RTN1 Missense_Mutation p.Q680H 0.63 deleterious(0.01) probably_damaging(0.999) TCGA-22-5482-01 14 89202760 89202760 C A EML5 Missense_Mutation p.V333F 0.12 deleterious(0.01) benign(0.361) TCGA-22-5482-01 15 25455122 25455122 G A SNORD115-22 RNA 0.09 TCGA-22-5482-01 15 26793167 26793167 C A GABRB3 Nonsense_Mutation p.G399* 0.07 TCGA-22-5482-01 15 26866572 26866572 C A GABRB3 Missense_Mutation p.W117L 0.48 deleterious(0) probably_damaging(1) TCGA-22-5482-01 15 50833434 50833434 C T USP50 Missense_Mutation p.E158K 0.65 tolerated(0.25) benign(0.11) TCGA-22-5482-01 15 59752218 59752218 G A FAM81A Missense_Mutation p.R36K 0.17 deleterious(0.02) probably_damaging(0.994) TCGA-22-5482-01 15 72643654 72643654 C T HEXA Intron 0.29 TCGA-22-5482-01 15 81181912 81181912 C T KIAA1199 Silent p.C355C 0.58 TCGA-22-5482-01 15 90144552 90144552 G T TICRR Missense_Mutation p.R726L 0.20 deleterious(0) probably_damaging(0.925) TCGA-22-5482-01 16 21061293 21061293 C T DNAH3 Missense_Mutation p.G1429S 0.57 deleterious(0) probably_damaging(0.999) TCGA-22-5482-01 16 2168068 2168068 C T PKD1 Missense_Mutation p.D309N 0.44 probably_damaging(0.999) TCGA-22-5482-01 16 23417525 23417525 C A COG7 Missense_Mutation p.G512C 0.10 deleterious(0.02) probably_damaging(0.941) TCGA-22-5482-01 16 3658448 3658448 G C SLX4 Missense_Mutation p.S173C 0.50 tolerated(0.11) benign(0.068) TCGA-22-5482-01 16 48239387 48239387 G A ABCC11 Missense_Mutation p.A581V 0.55 deleterious(0) probably_damaging(0.954) TCGA-22-5482-01 16 57546761 57546761 G A CCDC102A Silent p.N515N 0.43 TCGA-22-5482-01 16 85952247 85952247 C A IRF8 Missense_Mutation p.R276S 0.53 deleterious(0) probably_damaging(0.999) TCGA-22-5482-01 17 42466708 42466708 G T ITGA2B Missense_Mutation p.P45H 0.62 deleterious(0) probably_damaging(0.953) TCGA-22-5482-01 17 5417962 5417962 T A NLRP1 3'Flank 0.56 TCGA-22-5482-01 17 65907828 65907828 A T BPTF Missense_Mutation p.E1276D 0.65 benign(0.003) TCGA-22-5482-01 17 7578556 7578556 T C TP53 Splice_Site p.X126_splice 0.76 TCGA-22-5482-01 17 78341763 78341763 T G RNF213 Missense_Mutation p.F3992C 0.61 benign(0.048) TCGA-22-5482-01 18 28586895 28586895 C A DSC3 Silent p.L622L 0.38 TCGA-22-5482-01 18 59221671 59221671 G C CDH20 Missense_Mutation p.A717P 0.27 tolerated(1) benign(0.308) TCGA-22-5482-01 18 65179576 65179576 T G DSEL Missense_Mutation p.K767T 0.21 tolerated(0.06) benign(0.116) TCGA-22-5482-01 18 74637290 74637290 G C ZNF236 Missense_Mutation p.K1267N 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-22-5482-01 19 10335434 10335434 C T S1PR2 Missense_Mutation p.E50K 0.29 deleterious(0) probably_damaging(0.984) TCGA-22-5482-01 19 10478977 10478977 C A TYK2 Missense_Mutation p.R104L 0.32 deleterious(0.01) probably_damaging(0.97) TCGA-22-5482-01 19 14589276 14589276 G A GIPC1 Silent p.V318V 0.42 TCGA-22-5482-01 19 16024572 16024572 C A CYP4F11 Silent p.R515R 0.44 TCGA-22-5482-01 19 17660297 17660297 G A FAM129C Missense_Mutation p.D602N 0.28 deleterious(0.05) possibly_damaging(0.603) TCGA-22-5482-01 19 18120427 18120427 G C ARRDC2 Missense_Mutation p.K172N 0.25 deleterious(0) probably_damaging(0.999) TCGA-22-5482-01 19 19243311 19243311 C A TMEM161A Missense_Mutation p.R98L 0.20 deleterious(0.01) possibly_damaging(0.624) TCGA-22-5482-01 19 30936105 30936105 C G ZNF536 Missense_Mutation p.R546G 0.24 tolerated(0.35) probably_damaging(0.994) TCGA-22-5482-01 19 35791178 35791178 C T MAG Missense_Mutation p.R281W 0.33 tolerated(0.11) possibly_damaging(0.87) TCGA-22-5482-01 19 38682891 38682891 G T SIPA1L3 Missense_Mutation p.D1513Y 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-22-5482-01 19 41007885 41007885 A G SPTBN4 Missense_Mutation p.Y281C 0.33 deleterious(0) probably_damaging(0.926) TCGA-22-5482-01 19 44793161 44793161 C T ZNF235 Missense_Mutation p.V143M 0.29 tolerated(0.12) benign(0.005) TCGA-22-5482-01 19 45368682 45368682 T C PVRL2 Silent p.N81N 0.27 TCGA-22-5482-01 19 45477734 45477734 A G CLPTM1 Silent p.T116T 0.23 TCGA-22-5482-01 19 47151653 47151653 T A DACT3 3'UTR 0.32 TCGA-22-5482-01 19 47425108 47425108 T C ARHGAP35 Missense_Mutation p.L1059S 0.36 tolerated(0.21) benign(0.124) TCGA-22-5482-01 19 53057901 53057901 C G ZNF808 Missense_Mutation p.Q578E 0.31 tolerated(0.37) probably_damaging(0.969) TCGA-22-5482-01 19 55401172 55401172 C A FCAR Missense_Mutation p.S269R 0.28 tolerated(0.07) possibly_damaging(0.494) TCGA-22-5482-01 19 57678802 57678802 C A DUXA Missense_Mutation p.D4Y 0.29 deleterious_low_confidence(0) possibly_damaging(0.867) TCGA-22-5482-01 19 746310 746310 C T PALM Silent p.A220A 0.13 TCGA-22-5482-01 19 9060155 9060155 G T MUC16 Missense_Mutation p.D9097E 0.39 unknown(0) TCGA-22-5482-01 19 9076678 9076678 C A MUC16 Missense_Mutation p.D3590Y 0.25 unknown(0) TCGA-22-5482-01 1 145075933 145075933 T A PDE4DIP 5'UTR 0.24 TCGA-22-5482-01 1 15956822 15956822 T G DDI2 Missense_Mutation p.L91V 0.18 tolerated(0.21) benign(0.434) TCGA-22-5482-01 1 162335234 162335234 C G RP11-565P22.6 Missense_Mutation p.A13G 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-22-5482-01 1 182353685 182353685 G C GLUL Missense_Mutation p.P326R 0.19 deleterious(0) probably_damaging(1) TCGA-22-5482-01 1 182909662 182909662 T C SHCBP1L Missense_Mutation p.Y191C 0.51 tolerated(0.18) benign(0.413) TCGA-22-5482-01 1 183559542 183559542 G T NCF2 5'UTR 0.41 TCGA-22-5482-01 1 185114649 185114649 T C TRMT1L Missense_Mutation p.I193V 0.30 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-22-5482-01 1 197030140 197030140 T G F13B Missense_Mutation p.K173Q 0.17 tolerated(0.13) benign(0.082) TCGA-22-5482-01 1 200784772 200784772 G A CAMSAP2 Silent p.K215K 0.38 TCGA-22-5482-01 1 207930442 207930442 G C CD46 Missense_Mutation p.D61H 0.61 tolerated(0.19) benign(0.039) TCGA-22-5482-01 1 215759994 215759994 G T KCTD3 Missense_Mutation p.W261C 0.56 deleterious(0.02) probably_damaging(0.999) TCGA-22-5482-01 1 235896901 235896901 C A LYST Missense_Mutation p.E2901D 0.15 deleterious(0) probably_damaging(0.978) TCGA-22-5482-01 1 247719715 247719715 G T GCSAML Silent p.L12L 0.21 TCGA-22-5482-01 1 247921596 247921596 G T OR1C1 Missense_Mutation p.T38N 0.25 deleterious(0.03) benign(0.035) TCGA-22-5482-01 1 39797858 39797858 A G MACF1 Intron 0.59 TCGA-22-5482-01 1 40420981 40420981 G T MFSD2A Missense_Mutation p.G6V 0.58 deleterious(0) unknown(0) TCGA-22-5482-01 1 43774787 43774787 C T TIE1 Silent p.D391D 0.64 TCGA-22-5482-01 1 53580395 53580395 G T SLC1A7 Intron 0.55 TCGA-22-5482-01 1 66098902 66098902 A G LEPR Intron 0.65 TCGA-22-5482-01 1 67558643 67558643 G T C1orf141 3'UTR 0.52 TCGA-22-5482-01 1 85115650 85115650 G A SSX2IP Intron 0.67 TCGA-22-5482-01 1 93091411 93091411 T G EVI5 Missense_Mutation p.E520D 0.23 tolerated(0.06) probably_damaging(0.971) TCGA-22-5482-01 20 21492936 21492936 C A NKX2-2 Missense_Mutation p.Q149H 0.22 deleterious(0) probably_damaging(1) TCGA-22-5482-01 20 30784376 30784376 G T PLAGL2 Missense_Mutation p.P457H 0.22 tolerated(0.09) probably_damaging(0.99) TCGA-22-5482-01 20 36974885 36974885 G T LBP 5'UTR 0.31 TCGA-22-5482-01 20 36974886 36974886 G T LBP 5'UTR 0.32 TCGA-22-5482-01 20 39991677 39991677 G A EMILIN3 Silent p.L178L 0.50 TCGA-22-5482-01 20 57273764 57273764 G A NPEPL1 Missense_Mutation p.V178M 0.20 deleterious(0) possibly_damaging(0.713) TCGA-22-5482-01 21 10942991 10942991 A T TPTE Missense_Mutation p.L199H 0.11 deleterious(0) probably_damaging(0.996) TCGA-22-5482-01 21 22849615 22849615 G A NCAM2 Missense_Mutation p.D634N 0.32 tolerated(0.25) probably_damaging(0.999) TCGA-22-5482-01 21 30302818 30302818 T C LTN1 Silent p.T1797T 0.22 TCGA-22-5482-01 22 20760468 20760468 A G ZNF74 Missense_Mutation p.H382R 0.23 deleterious(0) probably_damaging(0.996) TCGA-22-5482-01 22 31835938 31835938 A G EIF4ENIF1 Silent p.D962D 0.15 TCGA-22-5482-01 2 107049642 107049642 A G RGPD3 Silent p.L769L 0.11 TCGA-22-5482-01 2 130832484 130832484 T A POTEF Missense_Mutation p.D854V 0.47 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-22-5482-01 2 131520751 131520751 C A AMER3 Missense_Mutation p.T369K 0.23 deleterious(0) probably_damaging(0.999) TCGA-22-5482-01 2 136566581 136566581 G T LCT Nonsense_Mutation p.Y1112* 0.36 TCGA-22-5482-01 2 152525607 152525607 C T NEB Silent p.K1515K 0.27 TCGA-22-5482-01 2 167108342 167108342 A T SCN9A Silent p.P1124P 0.45 TCGA-22-5482-01 2 171709291 171709291 G A GAD1 Missense_Mutation p.V418I 0.23 tolerated(0.36) benign(0.008) TCGA-22-5482-01 2 178098935 178098937 AAT - NFE2L2 In_Frame_Del p.F37del 0.43 TCGA-22-5482-01 2 189916169 189916169 C A COL5A2 Silent p.G936G 0.36 TCGA-22-5482-01 2 202149561 202149561 A G CASP8 Silent p.E334E 0.28 TCGA-22-5482-01 2 210650903 210650903 C G UNC80 Missense_Mutation p.N238K 0.13 possibly_damaging(0.448) TCGA-22-5482-01 2 211481167 211481167 C A CPS1 Silent p.S869S 0.35 TCGA-22-5482-01 2 211481168 211481168 C A CPS1 Missense_Mutation p.L870I 0.35 tolerated(0.29) benign(0.003) TCGA-22-5482-01 2 227895291 227895291 G T COL4A4 Missense_Mutation p.P1281T 0.22 unknown(0) TCGA-22-5482-01 2 232458019 232458019 G A C2orf57 Silent p.Q119Q 0.30 TCGA-22-5482-01 2 234681017 234681017 C T UGT1A4 Missense_Mutation p.P473S 0.23 tolerated(0.11) benign(0.052) TCGA-22-5482-01 2 54045148 54045148 A T ERLEC1 3'UTR 0.14 TCGA-22-5482-01 2 63176080 63176080 A T EHBP1 Missense_Mutation p.E735V 0.31 deleterious_low_confidence(0) benign(0.027) TCGA-22-5482-01 2 80816562 80816562 T C CTNNA2 Missense_Mutation p.L714P 0.38 deleterious(0) probably_damaging(0.986) TCGA-22-5482-01 2 87085418 87085418 C T CD8B Silent p.L55L 0.32 TCGA-22-5482-01 3 129281766 129281766 C A PLXND1 Missense_Mutation p.Q1563H 0.11 tolerated(0.06) probably_damaging(0.971) TCGA-22-5482-01 3 129284822 129284822 A T PLXND1 Silent p.I1410I 0.16 TCGA-22-5482-01 3 129290106 129290106 G A PLXND1 Missense_Mutation p.S1126F 0.37 deleterious(0) probably_damaging(0.971) TCGA-22-5482-01 3 130189746 130189746 G A COL6A5 Missense_Mutation p.M2503I 0.19 tolerated(0.08) benign(0.003) TCGA-22-5482-01 3 14763184 14763205 GTACTGGGACAGGACTCCATCA - C3orf20 Frame_Shift_Del p.V487Qfs*7 0.47 TCGA-22-5482-01 3 169644912 169644912 G T SAMD7 Missense_Mutation p.A288S 0.09 tolerated(0.45) benign(0.007) TCGA-22-5482-01 3 172634157 172634157 G T SPATA16 Missense_Mutation p.L485I 0.14 deleterious(0) possibly_damaging(0.567) TCGA-22-5482-01 3 183490318 183490318 G T YEATS2 Missense_Mutation p.A725S 0.62 tolerated_low_confidence(0.29) benign(0.001) TCGA-22-5482-01 3 195027282 195027282 G T ACAP2 Silent p.T358T 0.07 TCGA-22-5482-01 3 37034359 37034359 C A EPM2AIP1 Silent p.A70A 0.34 TCGA-22-5482-01 3 42299725 42299725 T C CCK Splice_Site p.X72_splice 0.45 TCGA-22-5482-01 3 97887798 97887798 C A OR5H15 Missense_Mutation p.F85L 0.09 tolerated(0.17) benign(0.005) TCGA-22-5482-01 3 98487337 98487337 T A ST3GAL6 Missense_Mutation p.V18E 0.14 deleterious(0) possibly_damaging(0.877) TCGA-22-5482-01 4 110915996 110915996 G T EGF Missense_Mutation p.V989L 0.39 tolerated(0.08) benign(0.168) TCGA-22-5482-01 4 25160666 25160666 T A SEPSECS Missense_Mutation p.I60F 0.66 tolerated(0.23) benign(0.011) TCGA-22-5482-01 4 3432376 3432376 A C RGS12 Missense_Mutation p.S1270R 0.80 tolerated_low_confidence(0.19) benign(0.372) TCGA-22-5482-01 4 7727000 7727000 G A SORCS2 Missense_Mutation p.G911S 0.69 tolerated(0.08) probably_damaging(1) TCGA-22-5482-01 4 96222807 96222807 C T UNC5C Nonsense_Mutation p.W147* 0.60 TCGA-22-5482-01 5 113831669 113831669 G T KCNN2 Silent p.L510L 0.34 TCGA-22-5482-01 5 113831670 113831670 G T KCNN2 Nonsense_Mutation p.E511* 0.35 TCGA-22-5482-01 5 140572876 140572876 G A PCDHB10 Missense_Mutation p.A251T 0.50 deleterious_low_confidence(0.02) benign(0.002) TCGA-22-5482-01 5 35910625 35910625 T C CAPSL Missense_Mutation p.D53G 0.21 deleterious(0.03) benign(0.424) TCGA-22-5482-01 5 35910626 35910626 C A CAPSL Missense_Mutation p.D53Y 0.20 deleterious(0) probably_damaging(0.991) TCGA-22-5482-01 5 64850711 64850711 C A CENPK Silent p.P8P 0.41 TCGA-22-5482-01 5 75427860 75427860 C T SV2C Silent p.G95G 0.40 TCGA-22-5482-01 5 80363979 80363979 T C RASGRF2 Missense_Mutation p.I175T 0.54 deleterious(0.02) probably_damaging(0.998) TCGA-22-5482-01 5 86679553 86679553 T A RASA1 Missense_Mutation p.I905N 0.57 deleterious(0) probably_damaging(0.996) TCGA-22-5482-01 6 101095150 101095150 T A ASCC3 Nonsense_Mutation p.K1144* 0.28 TCGA-22-5482-01 6 106992566 106992566 A G AIM1 Missense_Mutation p.I1312M 0.30 deleterious(0.02) benign(0.301) TCGA-22-5482-01 6 117704610 117704610 A G ROS1 Missense_Mutation p.V789A 0.29 tolerated(0.13) probably_damaging(0.997) TCGA-22-5482-01 6 130762050 130762050 G C TMEM200A Missense_Mutation p.R161S 0.23 deleterious(0) probably_damaging(0.998) TCGA-22-5482-01 6 153073419 153073419 G T VIP Missense_Mutation p.R36M 0.28 deleterious(0) possibly_damaging(0.838) TCGA-22-5482-01 6 169623439 169623439 G A THBS2 Missense_Mutation p.P969S 0.26 deleterious(0) probably_damaging(0.999) TCGA-22-5482-01 6 26252236 26252236 A - HIST1H2BH Frame_Shift_Del p.T120Pfs*? 0.39 TCGA-22-5482-01 6 32085724 32085724 C A ATF6B Nonsense_Mutation p.E446* 0.52 TCGA-22-5482-01 6 38830132 38830132 A G DNAH8 Missense_Mutation p.T1853A 0.49 probably_damaging(1) TCGA-22-5482-01 6 40360526 40360526 C A LRFN2 Missense_Mutation p.G509V 0.42 deleterious(0) probably_damaging(0.997) TCGA-22-5482-01 6 43415504 43415507 TGGA - ABCC10 Frame_Shift_Del p.D1264Efs*2 0.43 TCGA-22-5482-01 7 108119674 108119674 C T PNPLA8 Silent p.L676L 0.41 TCGA-22-5482-01 7 116955272 116955272 G A WNT2 Silent p.D147D 0.40 TCGA-22-5482-01 7 154585838 154585838 G T DPP6 Missense_Mutation p.V396L 0.38 deleterious(0) benign(0.178) TCGA-22-5482-01 7 156798434 156798434 C T MNX1 Missense_Mutation p.G329E 0.35 tolerated(0.26) benign(0.019) TCGA-22-5482-01 7 20180519 20180519 C T MACC1 3'UTR 0.15 TCGA-22-5482-01 7 36656025 36656025 G T AOAH Missense_Mutation p.H269Q 0.39 deleterious(0.01) possibly_damaging(0.905) TCGA-22-5482-01 7 77975258 77975258 C T MAGI2 Silent p.L402L 0.30 TCGA-22-5482-01 7 88423638 88423638 G A C7orf62 Silent p.L207L 0.48 TCGA-22-5482-01 7 88423646 88423646 G A C7orf62 Missense_Mutation p.A204V 0.47 tolerated(0.66) benign(0.005) TCGA-22-5482-01 7 94827677 94827677 G T PPP1R9A Nonsense_Mutation p.E591* 0.40 TCGA-22-5482-01 7 99818380 99818380 C A PVRIG Intron 0.20 TCGA-22-5482-01 8 105367395 105367395 G C DCSTAMP Silent p.L440L 0.19 TCGA-22-5482-01 8 10756095 10756095 A G XKR6 Silent p.F431F 0.54 TCGA-22-5482-01 8 110455259 110455259 A C PKHD1L1 Missense_Mutation p.Q1493P 0.05 deleterious(0) benign(0.064) TCGA-22-5482-01 8 113308094 113308094 T C CSMD3 Missense_Mutation p.H2861R 0.38 tolerated(0.07) possibly_damaging(0.881) TCGA-22-5482-01 8 113326230 113326230 G A CSMD3 Missense_Mutation p.S2534F 0.20 deleterious(0.02) benign(0.361) TCGA-22-5482-01 8 142228546 142228546 T A SLC45A4 Missense_Mutation p.Y347F 0.29 tolerated(0.29) benign(0.007) TCGA-22-5482-01 8 145151539 145151539 C G CYC1 Missense_Mutation p.P222A 0.37 deleterious(0) probably_damaging(1) TCGA-22-5482-01 8 35541202 35541202 C T UNC5D Silent p.I236I 0.39 TCGA-22-5482-01 8 63659621 63659621 T A NKAIN3 Missense_Mutation p.V135D 0.29 deleterious(0.04) probably_damaging(0.992) TCGA-22-5482-01 8 71060681 71060681 T A NCOA2 Missense_Mutation p.D811V 0.45 deleterious(0) probably_damaging(0.925) TCGA-22-5482-01 8 77618090 77618090 C A ZFHX4 Missense_Mutation p.H589Q 0.20 benign(0.402) TCGA-22-5482-01 8 77618091 77618091 C A ZFHX4 Missense_Mutation p.Q590K 0.21 benign(0.092) TCGA-22-5482-01 8 88886097 88886097 C A DCAF4L2 Missense_Mutation p.G35C 0.25 deleterious(0) probably_damaging(1) TCGA-22-5482-01 9 104356945 104356945 C T PPP3R2 Missense_Mutation p.D90N 0.50 tolerated(0.42) benign(0.008) TCGA-22-5482-01 9 115805839 115805839 C A ZFP37 Missense_Mutation p.Q353H 0.50 deleterious(0) possibly_damaging(0.863) TCGA-22-5482-01 9 122004337 122004337 A T BRINP1 Silent p.T189T 0.53 TCGA-22-5482-01 9 125760918 125760918 C T RABGAP1 Missense_Mutation p.T416I 0.23 tolerated(0.12) probably_damaging(0.998) TCGA-22-5482-01 9 32630711 32630711 T C TAF1L Missense_Mutation p.I1623V 0.55 tolerated(0.08) benign(0) TCGA-22-5482-01 9 79971682 79971682 A G VPS13A Missense_Mutation p.M2569V 0.49 deleterious(0.03) benign(0.097) TCGA-22-5482-01 9 88880991 88880991 C A ISCA1 Silent p.G119G 0.22 TCGA-22-5482-01 9 88880992 88880992 C T ISCA1 Missense_Mutation p.G119E 0.22 tolerated(0.22) probably_damaging(0.967) TCGA-22-5482-01 X 113865290 113865290 C A HTR2C Intron 0.63 TCGA-22-5482-01 X 128957694 128957694 G A ZDHHC9 Missense_Mutation p.P150S 0.53 deleterious(0) possibly_damaging(0.898) TCGA-22-5482-01 X 12937337 12937337 A G TLR8 Missense_Mutation p.T60A 0.07 tolerated(0.34) benign(0.009) TCGA-22-5482-01 X 151336921 151336921 C T GABRA3 Missense_Mutation p.A420T 0.68 tolerated(0.25) benign(0.395) TCGA-22-5482-01 X 3030249 3030249 G C ARSF Silent p.P475P 0.62 TCGA-22-5482-01 X 31462724 31462724 C T DMD Silent p.A2986A 0.59 TCGA-22-5482-01 X 43702931 43702931 C T MAOB Silent p.R42R 0.68 TCGA-22-5482-01 X 77224608 77224608 C T PGAM4 Silent p.K176K 0.69 TCGA-22-5482-01 X 77301842 77301842 A G ATP7A Missense_Mutation p.I1426M 0.69 tolerated(1) benign(0.001) TCGA-22-5482-01 X 90691561 90691561 A T PABPC5 Missense_Mutation p.S329C 0.64 deleterious(0.01) benign(0.118) TCGA-22-5483-01 10 26409631 26409631 C A MYO3A Silent p.L601L 0.65 TCGA-22-5483-01 11 100922276 100922276 C A PGR Missense_Mutation p.D746Y 0.19 deleterious(0) probably_damaging(1) TCGA-22-5483-01 11 1019361 1019361 G T MUC6 Missense_Mutation p.P1315Q 0.29 unknown(0) TCGA-22-5483-01 11 120996445 120996445 T A TECTA Missense_Mutation p.F546L 0.23 deleterious(0) probably_damaging(0.949) TCGA-22-5483-01 11 124949008 124949008 T A SLC37A2 Missense_Mutation p.S105R 0.27 deleterious(0.01) probably_damaging(0.995) TCGA-22-5483-01 11 20907051 20907051 C T NELL1 Missense_Mutation p.L190F 0.47 deleterious(0.01) probably_damaging(0.991) TCGA-22-5483-01 11 34113549 34113549 A T CAPRIN1 Missense_Mutation p.S551C 0.32 deleterious(0) probably_damaging(0.954) TCGA-22-5483-01 11 50003443 50003443 C A OR4C12 Missense_Mutation p.V199L 0.46 tolerated_low_confidence(0.08) benign(0.006) TCGA-22-5483-01 11 5344622 5344622 G T OR51B2 Silent p.I302I 0.20 TCGA-22-5483-01 11 5443976 5443976 C A OR51Q1 Silent p.L182L 0.31 TCGA-22-5483-01 11 56113598 56113598 G T OR8K1 Silent p.G28G 0.45 TCGA-22-5483-01 11 58035338 58035338 G A OR10W1 5'UTR 0.33 TCGA-22-5483-01 11 58392027 58392027 C G CNTF 3'UTR 0.20 TCGA-22-5483-01 11 59943065 59943065 C G MS4A6A Missense_Mutation p.G148A 0.54 tolerated(0.88) benign(0.01) TCGA-22-5483-01 11 60468476 60468476 G C MS4A8 Missense_Mutation p.G48A 0.31 tolerated(0.17) possibly_damaging(0.447) TCGA-22-5483-01 11 62760802 62760802 C A SLC22A8 Silent p.L512L 0.38 TCGA-22-5483-01 11 66610994 66610994 C G RCE1 Missense_Mutation p.S23W 0.44 deleterious(0.01) possibly_damaging(0.892) TCGA-22-5483-01 11 68822251 68822251 G A TPCN2 Silent p.S79S 0.29 TCGA-22-5483-01 11 76891441 76891441 G A MYO7A Missense_Mutation p.E870K 0.20 tolerated(0.52) benign(0.439) TCGA-22-5483-01 11 82917141 82917141 C T ANKRD42 Silent p.H60H 0.03 TCGA-22-5483-01 11 84634277 84634277 G A DLG2 Intron 0.35 TCGA-22-5483-01 12 102061514 102061514 G A MYBPC1 Silent p.E780E 0.49 TCGA-22-5483-01 12 103352604 103352604 C A ASCL1 Silent p.S194S 0.45 TCGA-22-5483-01 12 121416816 121416816 C A HNF1A Missense_Mutation p.T82K 0.42 deleterious(0.01) probably_damaging(0.995) TCGA-22-5483-01 12 128899827 128899827 C A TMEM132C Silent p.A212A 0.71 TCGA-22-5483-01 12 20874982 20874982 A T SLCO1C1 Missense_Mutation p.R340S 0.52 tolerated(0.11) benign(0.009) TCGA-22-5483-01 12 21229385 21229385 G T SLCO1B7 Splice_Site p.X536_splice 0.23 TCGA-22-5483-01 12 40110624 40110624 G T C12orf40 Missense_Mutation p.S493I 0.36 deleterious(0.03) probably_damaging(0.98) TCGA-22-5483-01 12 40499312 40499312 C T SLC2A13 Missense_Mutation p.G100E 0.40 deleterious(0) probably_damaging(0.994) TCGA-22-5483-01 12 44130214 44130214 G T PUS7L Missense_Mutation p.D565E 0.43 tolerated(0.6) benign(0.026) TCGA-22-5483-01 12 69140492 69140492 C G SLC35E3 Missense_Mutation p.P112R 0.44 deleterious(0) probably_damaging(0.998) TCGA-22-5483-01 12 7805168 7805168 A C APOBEC1 Missense_Mutation p.F103C 0.19 deleterious(0) probably_damaging(1) TCGA-22-5483-01 12 7805175 7805175 T A APOBEC1 Nonsense_Mutation p.R101* 0.20 TCGA-22-5483-01 12 81851635 81851635 G T PPFIA2 Missense_Mutation p.A105E 0.38 deleterious(0) possibly_damaging(0.848) TCGA-22-5483-01 12 8278238 8278238 T A CLEC4A Missense_Mutation p.L55Q 0.52 deleterious(0) probably_damaging(0.988) TCGA-22-5483-01 12 85694949 85694949 G T ALX1 Missense_Mutation p.W226L 0.21 deleterious(0) benign(0.051) TCGA-22-5483-01 12 91502733 91502733 G C LUM Silent p.L8L 0.46 TCGA-22-5483-01 13 103506655 103506655 G T BIVM-ERCC5 Missense_Mutation p.S559I 0.73 deleterious(0) probably_damaging(0.975) TCGA-22-5483-01 13 20220859 20220859 C - MPHOSPH8 Frame_Shift_Del p.D219Mfs*3 0.28 TCGA-22-5483-01 13 32527069 32527069 C T EEF1DP3 RNA 0.82 TCGA-22-5483-01 13 35630203 35630203 G T NBEA Silent p.R343R 0.60 TCGA-22-5483-01 13 35770158 35770158 A T NBEA Silent p.T1695T 0.63 TCGA-22-5483-01 13 46917610 46917610 T C KIAA0226L Silent p.K633K 0.57 TCGA-22-5483-01 14 103336770 103336770 G T TRAF3 Missense_Mutation p.A78S 0.88 tolerated(0.54) benign(0.002) TCGA-22-5483-01 14 20692422 20692422 C T OR11H6 Missense_Mutation p.P185L 0.76 deleterious(0.01) probably_damaging(0.955) TCGA-22-5483-01 14 86089239 86089239 T A FLRT2 Missense_Mutation p.L461I 0.04 tolerated(0.26) possibly_damaging(0.762) TCGA-22-5483-01 14 90446919 90446919 G C TDP1 Missense_Mutation p.R276P 0.68 deleterious(0) probably_damaging(1) TCGA-22-5483-01 15 23890406 23890406 T A MAGEL2 Silent p.V225V 0.42 TCGA-22-5483-01 15 23890666 23890666 G T MAGEL2 Missense_Mutation p.R139S 0.40 deleterious_low_confidence(0) benign(0.264) TCGA-22-5483-01 15 23931941 23931941 G T NDN Missense_Mutation p.R142S 0.49 deleterious(0.02) probably_damaging(0.951) TCGA-22-5483-01 15 27182432 27182432 G A GABRA5 Silent p.L227L 0.40 TCGA-22-5483-01 15 28202839 28202839 C A OCA2 Missense_Mutation p.R560L 0.31 deleterious(0.04) possibly_damaging(0.665) TCGA-22-5483-01 15 28517360 28517360 C T HERC2 Splice_Site p.X361_splice 0.19 TCGA-22-5483-01 15 40241454 40241454 G A EIF2AK4 Silent p.R166R 0.47 TCGA-22-5483-01 15 45427746 45427746 G T DUOX1 Silent p.R190R 0.60 TCGA-22-5483-01 15 48062797 48062797 A G SEMA6D Silent p.A679A 0.35 TCGA-22-5483-01 15 48500275 48500275 G A SLC12A1 Missense_Mutation p.S120N 0.32 tolerated(0.08) probably_damaging(0.983) TCGA-22-5483-01 15 54025232 54025232 C G WDR72 Missense_Mutation p.G39R 0.31 deleterious(0) probably_damaging(1) TCGA-22-5483-01 15 75705112 75705112 C T SIN3A Missense_Mutation p.V250I 0.09 tolerated(1) benign(0) TCGA-22-5483-01 15 77067291 77067291 C A SCAPER Missense_Mutation p.G314C 0.38 deleterious(0.04) possibly_damaging(0.547) TCGA-22-5483-01 15 77907939 77907939 C T LINGO1 Missense_Mutation p.E104K 0.30 tolerated(0.07) possibly_damaging(0.618) TCGA-22-5483-01 15 89860188 89860188 T C FANCI 3'UTR 0.42 TCGA-22-5483-01 16 10032292 10032292 G A GRIN2A Silent p.F177F 0.06 TCGA-22-5483-01 16 15225011 15225011 C G RP11-1186N24.5 RNA 0.52 TCGA-22-5483-01 16 1570622 1570622 T G IFT140 Missense_Mutation p.Q1214P 0.38 deleterious(0) probably_damaging(0.997) TCGA-22-5483-01 16 21139095 21139095 A T DNAH3 Missense_Mutation p.L374Q 0.25 tolerated(0.34) benign(0.062) TCGA-22-5483-01 16 2160677 2160677 G T PKD1 Missense_Mutation p.S1497R 0.32 benign(0.013) TCGA-22-5483-01 16 21689876 21689876 T C OTOA Missense_Mutation p.L14P 0.26 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-22-5483-01 16 24942560 24942562 CCT AA ARHGAP17 Frame_Shift_Del p.G687Sfs*39 0.43 TCGA-22-5483-01 16 30081499 30081499 G C ALDOA Missense_Mutation p.S408T 0.40 tolerated(0.17) benign(0.003) TCGA-22-5483-01 16 3100506 3100506 C T MMP25 Missense_Mutation p.T207I 0.28 deleterious(0) probably_damaging(0.987) TCGA-22-5483-01 16 31341849 31341849 G T ITGAM Missense_Mutation p.V1068L 0.33 tolerated(0.13) possibly_damaging(0.767) TCGA-22-5483-01 16 3139868 3139868 C G ZSCAN10 Missense_Mutation p.V468L 0.50 tolerated(0.29) benign(0.149) TCGA-22-5483-01 16 31471185 31471185 G C ARMC5 Missense_Mutation p.V114L 0.64 tolerated_low_confidence(0.2) unknown(0) TCGA-22-5483-01 16 4027522 4027522 C T ADCY9 Missense_Mutation p.G930E 0.29 tolerated(0.07) benign(0.078) TCGA-22-5483-01 16 4409601 4409601 G A CORO7 Silent p.L710L 0.41 TCGA-22-5483-01 16 67916529 67916529 G T EDC4 Intron 0.54 TCGA-22-5483-01 16 76523605 76523605 G T CNTNAP4 Missense_Mutation p.Q562H 0.48 tolerated(0.11) benign(0.027) TCGA-22-5483-01 16 84027937 84027937 G T NECAB2 Silent p.A209A 0.20 TCGA-22-5483-01 16 8851629 8851629 C T ABAT Missense_Mutation p.A111V 0.23 tolerated(0.17) benign(0.103) TCGA-22-5483-01 17 13399934 13399934 C T HS3ST3A1 Silent p.E267E 0.52 TCGA-22-5483-01 17 18178147 18178147 T C TOP3A Missense_Mutation p.H992R 0.70 deleterious(0) probably_damaging(0.999) TCGA-22-5483-01 17 21206524 21206524 C A MAP2K3 Missense_Mutation p.S182R 0.13 tolerated(0.12) benign(0.076) TCGA-22-5483-01 17 25631886 25631886 G C WSB1 Missense_Mutation p.V187L 0.06 tolerated(0.06) benign(0.021) TCGA-22-5483-01 17 31266554 31266554 G A TMEM98 Missense_Mutation p.R158Q 0.39 deleterious(0.01) possibly_damaging(0.553) TCGA-22-5483-01 17 40704885 40704885 G A HSD17B1 5'UTR 0.36 TCGA-22-5483-01 17 43515152 43515152 G A PLEKHM1 3'UTR 0.41 TCGA-22-5483-01 17 55957038 55957038 G C CUEDC1 Missense_Mutation p.P133R 0.60 deleterious(0) probably_damaging(1) TCGA-22-5483-01 17 72851216 72851216 C T GRIN2C Missense_Mutation p.G6R 0.61 tolerated_low_confidence(0.15) benign(0.011) TCGA-22-5483-01 17 74735059 74735059 G C MFSD11 Missense_Mutation p.G46R 0.20 deleterious(0) probably_damaging(0.998) TCGA-22-5483-01 17 7576852 7576852 C G TP53 Splice_Site p.X331_splice 0.73 TCGA-22-5483-01 17 7657954 7657954 A G DNAH2 Intron 0.62 TCGA-22-5483-01 17 80202581 80202581 T A CSNK1D 3'UTR 0.67 TCGA-22-5483-01 17 8218862 8218862 A G ARHGEF15 Missense_Mutation p.N464S 0.75 tolerated(0.11) possibly_damaging(0.759) TCGA-22-5483-01 17 9765407 9765407 A T GLP2R Silent p.T352T 0.71 TCGA-22-5483-01 18 13826099 13826099 G C MC5R Missense_Mutation p.R112P 0.43 deleterious(0.04) probably_damaging(0.999) TCGA-22-5483-01 18 19153579 19153579 G A ESCO1 Missense_Mutation p.S409F 0.40 tolerated(0.05) possibly_damaging(0.681) TCGA-22-5483-01 18 32621631 32621631 G A MAPRE2 Intron 0.29 TCGA-22-5483-01 18 44560088 44560088 C T TCEB3B Silent p.S516S 0.32 TCGA-22-5483-01 18 5419919 5419919 C A EPB41L3 Intron 0.48 TCGA-22-5483-01 18 56247199 56247199 A T ALPK2 Missense_Mutation p.I270N 0.43 deleterious(0) possibly_damaging(0.854) TCGA-22-5483-01 18 66541955 66541955 G T CCDC102B Missense_Mutation p.G329V 0.32 tolerated(0.24) benign(0.042) TCGA-22-5483-01 18 7034656 7034656 C A LAMA1 Missense_Mutation p.G625C 0.34 deleterious(0.01) probably_damaging(0.992) TCGA-22-5483-01 18 74680433 74680433 A G ZNF236 3'UTR 0.54 TCGA-22-5483-01 19 1269976 1269976 A T CIRBP Intron 0.79 TCGA-22-5483-01 19 12937682 12937682 G A RTBDN Silent p.F155F 0.67 TCGA-22-5483-01 19 22836234 22836234 G T ZNF492 Silent p.V11V 0.21 TCGA-22-5483-01 19 24270032 24270032 C A ZNF254 5'UTR 0.43 TCGA-22-5483-01 19 31039574 31039574 G T ZNF536 Missense_Mutation p.M1016I 0.45 deleterious(0) probably_damaging(0.943) TCGA-22-5483-01 19 3765260 3765260 C T MRPL54 Missense_Mutation p.A72V 0.07 tolerated(0.17) possibly_damaging(0.816) TCGA-22-5483-01 19 39964648 39964648 G T SUPT5H Silent p.P846P 0.37 TCGA-22-5483-01 19 40541862 40541862 C A ZNF780B Nonsense_Mutation p.E302* 0.42 TCGA-22-5483-01 19 44514613 44514613 A G ZNF230 Missense_Mutation p.Q141R 0.34 tolerated(0.17) benign(0.003) TCGA-22-5483-01 19 49316981 49316981 C A HSD17B14 Missense_Mutation p.V161L 0.48 tolerated(0.13) benign(0.048) TCGA-22-5483-01 19 50193120 50193120 T C ADM5 Missense_Mutation p.L9P 0.19 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-22-5483-01 19 50549244 50549247 ATGA - ZNF473 Frame_Shift_Del p.E516Vfs*14 0.40 TCGA-22-5483-01 19 51165463 51165463 A G SHANK1 Missense_Mutation p.L2082P 0.49 unknown(0) TCGA-22-5483-01 19 52400115 52400115 A C ZNF649 Silent p.L44L 0.29 TCGA-22-5483-01 19 54230242 54230242 C A MIR518A1 5'Flank 0.41 TCGA-22-5483-01 19 54466472 54466472 G A CACNG8 Missense_Mutation p.V26M 0.58 tolerated(0.17) possibly_damaging(0.561) TCGA-22-5483-01 19 55316367 55316367 G C KIR2DL4 Missense_Mutation p.D66H 0.50 tolerated(0.1) benign(0.016) TCGA-22-5483-01 19 56952767 56952767 C T ZNF667 Missense_Mutation p.G533S 0.58 deleterious(0.03) probably_damaging(1) TCGA-22-5483-01 19 757600 757600 G A MISP Silent p.G218G 0.87 TCGA-22-5483-01 19 7806779 7806779 C G CD209 3'UTR 0.40 TCGA-22-5483-01 19 8176935 8176935 G C FBN3 Missense_Mutation p.S1296C 0.36 deleterious(0.02) probably_damaging(0.981) TCGA-22-5483-01 19 9578490 9578490 C A ZNF560 Missense_Mutation p.C378F 0.39 deleterious(0.04) probably_damaging(0.951) TCGA-22-5483-01 1 113253170 113253170 C T PPM1J Missense_Mutation p.D428N 0.08 deleterious(0) probably_damaging(1) TCGA-22-5483-01 1 149785210 149785210 G C HIST2H3D Silent p.R9R 0.37 TCGA-22-5483-01 1 152275786 152275786 T A FLG Missense_Mutation p.Q3859L 0.38 unknown(0) TCGA-22-5483-01 1 156146224 156146224 C T SEMA4A Silent p.S574S 0.48 TCGA-22-5483-01 1 167666459 167666459 G C RCSD1 Missense_Mutation p.E200Q 0.39 deleterious(0.02) possibly_damaging(0.591) TCGA-22-5483-01 1 171763539 171763539 G A METTL13 Missense_Mutation p.R566Q 0.40 tolerated(0.64) benign(0.006) TCGA-22-5483-01 1 177937048 177937048 T C SEC16B Silent p.P23P 0.36 TCGA-22-5483-01 1 182872173 182872173 C - SHCBP1L Splice_Site p.X570_splice 0.27 TCGA-22-5483-01 1 185964129 185964129 C A HMCN1 Missense_Mutation p.Q1230K 0.05 benign(0.078) TCGA-22-5483-01 1 186008036 186008036 T C HMCN1 Missense_Mutation p.I1976T 0.45 benign(0.345) TCGA-22-5483-01 1 196881946 196881946 A G CFHR4 Silent p.K357K 0.55 TCGA-22-5483-01 1 197160887 197160887 C T ZBTB41 Silent p.E421E 0.30 TCGA-22-5483-01 1 205417514 205417514 C T MIR135B RNA 0.41 TCGA-22-5483-01 1 206652294 206652294 T A IKBKE Missense_Mutation p.I334N 0.46 tolerated(0.17) benign(0.032) TCGA-22-5483-01 1 207642185 207642185 G C CR2 Missense_Mutation p.K225N 0.36 deleterious(0.01) benign(0.185) TCGA-22-5483-01 1 212799769 212799769 C A FAM71A Missense_Mutation p.S517Y 0.45 deleterious(0.01) possibly_damaging(0.867) TCGA-22-5483-01 1 212800061 212800061 G T FAM71A 3'UTR 0.39 TCGA-22-5483-01 1 214170002 214170002 T C PROX1 Missense_Mutation p.F42L 0.40 tolerated_low_confidence(0.43) benign(0.004) TCGA-22-5483-01 1 214787121 214787121 G A CENPF Nonsense_Mutation p.W8* 0.42 TCGA-22-5483-01 1 214814448 214814448 G A CENPF Missense_Mutation p.E923K 0.49 benign(0.046) TCGA-22-5483-01 1 226420282 226420282 G T LIN9 Missense_Mutation p.H533N 0.36 deleterious(0.01) possibly_damaging(0.889) TCGA-22-5483-01 1 227348245 227348245 G T CDC42BPA Missense_Mutation p.T231K 0.46 deleterious(0.02) possibly_damaging(0.676) TCGA-22-5483-01 1 236920893 236920893 G T ACTN2 Missense_Mutation p.Q754H 0.44 deleterious(0) probably_damaging(0.995) TCGA-22-5483-01 1 247695322 247695322 G T OR2C3 Silent p.T164T 0.40 TCGA-22-5483-01 1 248512769 248512769 C G OR14C36 Missense_Mutation p.D231E 0.39 tolerated(0.61) benign(0.013) TCGA-22-5483-01 1 31762223 31762223 C G SNRNP40 Missense_Mutation p.D137H 0.08 deleterious(0) probably_damaging(1) TCGA-22-5483-01 1 32138331 32138331 G A COL16A1 Silent p.C990C 0.06 TCGA-22-5483-01 1 3347555 3347555 C T PRDM16 Missense_Mutation p.A1135V 0.83 tolerated(0.06) benign(0.211) TCGA-22-5483-01 1 34191011 34191011 G T CSMD2 Silent p.L838L 0.79 TCGA-22-5483-01 1 38444439 38444439 A T SF3A3 Silent p.L296L 0.46 TCGA-22-5483-01 1 64669691 64669691 C A UBE2U 5'UTR 0.85 TCGA-22-5483-01 1 89449072 89449072 T A RBMXL1 Silent p.P146P 0.38 TCGA-22-5483-01 20 22563495 22563495 C A FOXA2 Missense_Mutation p.G129C 0.46 deleterious(0.01) possibly_damaging(0.879) TCGA-22-5483-01 20 2411586 2411586 C G TGM6 Missense_Mutation p.T627R 0.36 tolerated(0.2) benign(0.024) TCGA-22-5483-01 20 30388919 30388919 G T TPX2 3'UTR 0.38 TCGA-22-5483-01 20 4771232 4771232 C T RASSF2 Silent p.Q134Q 0.48 TCGA-22-5483-01 20 57766502 57766502 A C ZNF831 Missense_Mutation p.K143T 0.10 deleterious(0) possibly_damaging(0.863) TCGA-22-5483-01 21 10944757 10944757 G C TPTE Missense_Mutation p.N159K 0.11 deleterious(0.04) probably_damaging(0.919) TCGA-22-5483-01 21 11029674 11029674 G A BAGE2 RNA 0.14 TCGA-22-5483-01 21 35743033 35743033 C T KCNE2 Nonsense_Mutation p.Q86* 0.68 TCGA-22-5483-01 22 19132125 19132125 G T DGCR14 Missense_Mutation p.S10Y 0.21 deleterious_low_confidence(0.03) benign(0.039) TCGA-22-5483-01 22 23055613 23055613 C G IGLV3-21 Silent p.T92T 0.48 TCGA-22-5483-01 22 26423351 26423351 T G MYO18B Missense_Mutation p.S2471A 0.66 tolerated(1) benign(0.009) TCGA-22-5483-01 2 113513614 113513614 G A CKAP2L Missense_Mutation p.T445I 0.38 deleterious(0.03) possibly_damaging(0.613) TCGA-22-5483-01 2 137872694 137872694 G T THSD7B Missense_Mutation p.R400S 0.32 tolerated(0.24) possibly_damaging(0.774) TCGA-22-5483-01 2 141607832 141607832 T C LRP1B Missense_Mutation p.Y1593C 0.47 possibly_damaging(0.759) TCGA-22-5483-01 2 155295226 155295230 ATATG - GALNT13 Frame_Shift_Del p.Y507Cfs*2 0.32 TCGA-22-5483-01 2 177053613 177053613 C G HOXD1 Missense_Mutation p.C28W 0.39 deleterious(0) possibly_damaging(0.591) TCGA-22-5483-01 2 178098953 178098953 C G NFE2L2 Missense_Mutation p.G31A 0.35 deleterious(0.02) benign(0.318) TCGA-22-5483-01 2 179446443 179446443 G C TTN Silent p.G22184G 0.30 TCGA-22-5483-01 2 179594836 179594836 G A TTN Silent p.A6097A 0.26 TCGA-22-5483-01 2 185798433 185798433 T A ZNF804A Missense_Mutation p.L120Q 0.29 deleterious(0) probably_damaging(0.969) TCGA-22-5483-01 2 190532135 190532135 A T ASNSD1 Missense_Mutation p.N426I 0.06 deleterious(0) probably_damaging(0.999) TCGA-22-5483-01 2 192228568 192228568 G T MYO1B Missense_Mutation p.G294C 0.44 deleterious(0) probably_damaging(0.997) TCGA-22-5483-01 2 198949630 198949630 A G PLCL1 Silent p.T463T 0.37 TCGA-22-5483-01 2 210881321 210881321 C T RPE Missense_Mutation p.P145S 0.46 deleterious(0) probably_damaging(1) TCGA-22-5483-01 2 219289006 219289006 C A VIL1 Missense_Mutation p.Q28K 0.35 tolerated(0.71) benign(0.002) TCGA-22-5483-01 2 225658136 225658136 T G DOCK10 Silent p.A1731A 0.40 TCGA-22-5483-01 2 240056134 240056134 C A HDAC4 Silent p.T367T 0.42 TCGA-22-5483-01 2 241705178 241705178 C T KIF1A Missense_Mutation p.D573N 0.35 tolerated(0.15) benign(0.274) TCGA-22-5483-01 2 242435842 242435842 C T STK25 Silent p.L404L 0.34 TCGA-22-5483-01 2 36669815 36669815 C A CRIM1 Missense_Mutation p.P269H 0.05 deleterious(0) probably_damaging(0.996) TCGA-22-5483-01 2 54342810 54342810 T C ACYP2 5'UTR 0.35 TCGA-22-5483-01 2 56420514 56420514 C G CCDC85A Silent p.L393L 0.55 TCGA-22-5483-01 2 70508709 70508709 T C SNRPG 3'UTR 0.45 TCGA-22-5483-01 2 72968596 72968596 G C EXOC6B Missense_Mutation p.S39C 0.15 deleterious(0) possibly_damaging(0.832) TCGA-22-5483-01 2 89037586 89037586 G C RPIA Missense_Mutation p.M277I 0.44 deleterious(0.01) possibly_damaging(0.824) TCGA-22-5483-01 2 90212106 90212106 C G IGKV3D-11 Silent p.L66L 0.33 TCGA-22-5483-01 3 12983241 12983241 C A IQSEC1 Nonsense_Mutation p.G64* 0.64 TCGA-22-5483-01 3 134322562 134322562 C A KY Missense_Mutation p.W615C 0.07 tolerated(0.34) benign(0.016) TCGA-22-5483-01 3 142083958 142083958 C A XRN1 Missense_Mutation p.V1109F 0.35 deleterious(0) probably_damaging(0.994) TCGA-22-5483-01 3 148596471 148596471 C G CPA3 Missense_Mutation p.P137R 0.31 deleterious(0) probably_damaging(0.995) TCGA-22-5483-01 3 150377892 150377892 G T FAM194A Missense_Mutation p.D593E 0.41 tolerated(0.27) probably_damaging(0.955) TCGA-22-5483-01 3 151545425 151545425 T C AADAC Missense_Mutation p.L222P 0.77 deleterious(0) probably_damaging(0.996) TCGA-22-5483-01 3 164906334 164906334 T C SLITRK3 Missense_Mutation p.E762G 0.39 tolerated(0.1) benign(0.06) TCGA-22-5483-01 3 165548591 165548591 C T BCHE Silent p.L77L 0.39 TCGA-22-5483-01 3 165548814 165548814 C A BCHE Missense_Mutation p.S3I 0.32 tolerated_low_confidence(0.05) benign(0.05) TCGA-22-5483-01 3 173322611 173322611 G C NLGN1 Missense_Mutation p.G75R 0.39 tolerated(0.49) probably_damaging(0.999) TCGA-22-5483-01 3 179525617 179525617 G T PEX5L Missense_Mutation p.D507E 0.35 tolerated(0.05) possibly_damaging(0.476) TCGA-22-5483-01 3 182871657 182871657 G T LAMP3 Missense_Mutation p.A191D 0.37 deleterious(0.03) possibly_damaging(0.776) TCGA-22-5483-01 3 185635432 185635432 A G TRA2B 3'UTR 0.05 TCGA-22-5483-01 3 192517198 192517198 C G MB21D2 Silent p.R151R 0.31 TCGA-22-5483-01 3 193039485 193039485 A T ATP13A5 Missense_Mutation p.C634S 0.38 deleterious(0) probably_damaging(1) TCGA-22-5483-01 3 195701291 195701291 C T SDHAP1 RNA 0.40 TCGA-22-5483-01 3 73016720 73016720 C G GXYLT2 Missense_Mutation p.C333W 0.44 deleterious(0) probably_damaging(0.999) TCGA-22-5483-01 3 73453406 73453406 C T PDZRN3 Silent p.L353L 0.72 TCGA-22-5483-01 4 114277137 114277137 C T ANK2 Silent p.L2455L 0.30 TCGA-22-5483-01 4 123900510 123900510 C T SPATA5 Missense_Mutation p.A613V 0.31 deleterious(0.03) probably_damaging(0.994) TCGA-22-5483-01 4 158242611 158242611 T C GRIA2 Silent p.L248L 0.37 TCGA-22-5483-01 4 165891204 165891204 G A TRIM61 5'UTR 0.21 TCGA-22-5483-01 4 166385732 166385732 G C CPE Silent p.A166A 0.43 TCGA-22-5483-01 4 184205497 184205497 G A WWC2 Missense_Mutation p.R1001H 0.27 deleterious(0) probably_damaging(0.999) TCGA-22-5483-01 4 26484838 26484838 T A CCKAR Missense_Mutation p.I232F 0.32 deleterious(0) probably_damaging(0.998) TCGA-22-5483-01 4 30724994 30724994 A C PCDH7 Missense_Mutation p.E650D 0.31 deleterious(0) probably_damaging(0.999) TCGA-22-5483-01 4 46736931 46736931 T A COX7B2 3'UTR 0.17 TCGA-22-5483-01 4 5851147 5851147 T C CRMP1 Missense_Mutation p.H312R 0.49 deleterious(0) probably_damaging(0.934) TCGA-22-5483-01 4 66467954 66467954 C A EPHA5 Missense_Mutation p.M105I 0.32 deleterious(0.02) possibly_damaging(0.844) TCGA-22-5483-01 4 79808319 79808319 T - BMP2K Intron 0.39 TCGA-22-5483-01 4 81866085 81866085 G T C4orf22 Missense_Mutation p.D217Y 0.22 deleterious(0) probably_damaging(0.991) TCGA-22-5483-01 4 85742705 85742705 C A WDFY3 Splice_Site p.X375_splice 0.34 TCGA-22-5483-01 4 88903834 88903834 G A SPP1 Missense_Mutation p.R244K 0.37 tolerated(1) possibly_damaging(0.59) TCGA-22-5483-01 5 1064266 1064266 C A SLC12A7 Missense_Mutation p.D847Y 0.28 deleterious(0) probably_damaging(1) TCGA-22-5483-01 5 13807766 13807766 A G DNAH5 Silent p.Y2607Y 0.38 TCGA-22-5483-01 5 140203296 140203296 C A PCDHA5 Missense_Mutation p.L646I 0.83 deleterious_low_confidence(0.02) possibly_damaging(0.809) TCGA-22-5483-01 5 140731399 140731399 C G PCDHGB1 Missense_Mutation p.F524L 0.73 tolerated(0.44) benign(0.107) TCGA-22-5483-01 5 140856242 140856242 C T PCDHGC3 Missense_Mutation p.R187W 0.67 deleterious(0.02) probably_damaging(0.996) TCGA-22-5483-01 5 170736404 170736404 C T TLX3 Missense_Mutation p.P12L 0.67 tolerated(0.18) benign(0.007) TCGA-22-5483-01 5 35954503 35954503 C T UGT3A1 Nonsense_Mutation p.W458* 0.38 TCGA-22-5483-01 5 85578523 85578523 C A NBPF22P RNA 0.61 TCGA-22-5483-01 5 94859015 94859015 T C TTC37 Missense_Mutation p.I550V 0.71 tolerated(0.41) benign(0.004) TCGA-22-5483-01 6 10557027 10557027 T C GCNT2 Intron 0.53 TCGA-22-5483-01 6 132859565 132859565 C T TAAR9 Missense_Mutation p.A46V 0.33 tolerated(0.07) benign(0.037) TCGA-22-5483-01 6 142724992 142724992 C T GPR126 Missense_Mutation p.S670L 0.39 deleterious(0.01) benign(0.087) TCGA-22-5483-01 6 148840954 148840954 A T SASH1 Missense_Mutation p.E378D 0.42 tolerated_low_confidence(0.35) benign(0.036) TCGA-22-5483-01 6 158504558 158504558 T G SYNJ2 Missense_Mutation p.V988G 0.35 deleterious(0) possibly_damaging(0.474) TCGA-22-5483-01 6 159653390 159653390 G T FNDC1 Missense_Mutation p.A616S 0.47 tolerated_low_confidence(0.26) unknown(0) TCGA-22-5483-01 6 165715366 165715366 C A C6orf118 Missense_Mutation p.V149L 0.37 tolerated(0.31) benign(0.028) TCGA-22-5483-01 6 167549855 167549855 G C CCR6 Missense_Mutation p.R46T 0.33 tolerated(0.31) benign(0.009) TCGA-22-5483-01 6 25665243 25665243 A C SCGN Missense_Mutation p.S107R 0.77 deleterious(0) probably_damaging(0.997) TCGA-22-5483-01 6 32041426 32041426 G T RNA5SP206 3'Flank 0.30 TCGA-22-5483-01 6 34101253 34101253 C G GRM4 Missense_Mutation p.L7F 0.05 tolerated_low_confidence(0.71) benign(0.007) TCGA-22-5483-01 6 35436183 35436183 C T RPL10A 5'Flank 0.49 TCGA-22-5483-01 6 39313519 39313519 G T KIF6 Missense_Mutation p.H760N 0.50 tolerated(0.52) benign(0.001) TCGA-22-5483-01 6 39881061 39881061 C A MOCS1 Missense_Mutation p.G253C 0.41 deleterious(0) probably_damaging(1) TCGA-22-5483-01 6 4032674 4032674 G A PRPF4B Missense_Mutation p.R308Q 0.61 tolerated_low_confidence(0.07) possibly_damaging(0.651) TCGA-22-5483-01 6 46766349 46766349 G C MEP1A Missense_Mutation p.G51A 0.39 deleterious(0) possibly_damaging(0.826) TCGA-22-5483-01 6 56515817 56515817 G C DST Silent p.S236S 0.43 TCGA-22-5483-01 6 70610227 70610227 C A COL19A1 Missense_Mutation p.T88N 0.21 deleterious(0.03) unknown(0) TCGA-22-5483-01 6 70637871 70637871 A G COL19A1 Missense_Mutation p.K113E 0.36 deleterious(0.01) unknown(0) TCGA-22-5483-01 6 96054001 96054001 C T MANEA Missense_Mutation p.T370M 0.31 tolerated(0.12) benign(0.03) TCGA-22-5483-01 6 97246404 97246404 G C GPR63 Missense_Mutation p.R402G 0.37 deleterious(0) probably_damaging(0.994) TCGA-22-5483-01 7 100880734 100880734 G A CLDN15 Silent p.T43T 0.35 TCGA-22-5483-01 7 136699713 136699713 G C CHRM2 Missense_Mutation p.S34T 0.41 deleterious(0) probably_damaging(0.999) TCGA-22-5483-01 7 158494574 158494574 G T NCAPG2 Missense_Mutation p.T6K 0.27 tolerated(0.07) benign(0.131) TCGA-22-5483-01 7 29983652 29983652 C T SCRN1 Missense_Mutation p.R182H 0.06 deleterious(0) possibly_damaging(0.867) TCGA-22-5483-01 7 37780106 37780106 C T GPR141 Silent p.S37S 0.32 TCGA-22-5483-01 7 38299719 38299719 C A TRGC1 Silent p.T164T 0.27 TCGA-22-5483-01 7 43484756 43484756 C A HECW1 Missense_Mutation p.P662H 0.56 tolerated_low_confidence(0.36) benign(0.009) TCGA-22-5483-01 7 4900789 4900789 A G PAPOLB Missense_Mutation p.I217T 0.51 tolerated(0.14) possibly_damaging(0.896) TCGA-22-5483-01 7 6731720 6731720 T A ZNF12 Missense_Mutation p.I285F 0.27 tolerated(0.07) possibly_damaging(0.742) TCGA-22-5483-01 7 73466278 73466278 C T ELN Missense_Mutation p.A305V 0.27 unknown(0) TCGA-22-5483-01 7 74125429 74125429 A G GTF2I Missense_Mutation p.Y251C 0.58 tolerated(0.13) benign(0.02) TCGA-22-5483-01 7 84751143 84751143 A G SEMA3D Missense_Mutation p.L22S 0.36 tolerated(0.17) benign(0.008) TCGA-22-5483-01 7 88424102 88424102 A G C7orf62 Missense_Mutation p.L52P 0.32 deleterious(0) probably_damaging(0.955) TCGA-22-5483-01 7 92146819 92146819 T A PEX1 Missense_Mutation p.K337M 0.40 deleterious(0) benign(0.297) TCGA-22-5483-01 8 10285783 10285783 G C MSRA Silent p.G223G 0.20 TCGA-22-5483-01 8 103238259 103238259 C A RRM2B Missense_Mutation p.D70Y 0.15 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-22-5483-01 8 120977538 120977538 C A DEPTOR Silent p.T164T 0.50 TCGA-22-5483-01 8 12594259 12594260 - A LONRF1 Frame_Shift_Ins p.P468Sfs*21 0.29 TCGA-22-5483-01 8 133036774 133036774 C G OC90 Missense_Mutation p.R463P 0.21 tolerated(0.23) benign(0.274) TCGA-22-5483-01 8 139163513 139163513 G C FAM135B Missense_Mutation p.Q1069E 0.25 deleterious(0) probably_damaging(0.99) TCGA-22-5483-01 8 144621239 144621239 C A ZC3H3 Missense_Mutation p.G100W 0.59 deleterious(0) probably_damaging(0.924) TCGA-22-5483-01 8 144682105 144682105 G C TIGD5 3'UTR 0.50 TCGA-22-5483-01 8 145535876 145535876 C - HSF1 Frame_Shift_Del p.P365Rfs*12 0.41 TCGA-22-5483-01 8 1842581 1842581 A T ARHGEF10 Missense_Mutation p.E428V 0.40 deleterious(0) probably_damaging(0.936) TCGA-22-5483-01 8 24257766 24257766 C G ADAMDEC1 Missense_Mutation p.F365L 0.30 tolerated(0.22) benign(0.01) TCGA-22-5483-01 8 30361803 30361803 G C RBPMS Missense_Mutation p.G83R 0.33 deleterious(0) probably_damaging(0.999) TCGA-22-5483-01 8 55539636 55539636 T C RP1 Missense_Mutation p.V1065A 0.47 tolerated(0.21) benign(0.116) TCGA-22-5483-01 8 55542577 55542577 T C RP1 Silent p.G2045G 0.25 TCGA-22-5483-01 8 61764777 61764777 G T CHD7 Missense_Mutation p.R1955S 0.21 benign(0.009) TCGA-22-5483-01 8 67062607 67062607 G T TRIM55 Missense_Mutation p.M297I 0.25 tolerated(0.11) benign(0.074) TCGA-22-5483-01 8 67062608 67062608 G T TRIM55 Nonsense_Mutation p.E298* 0.23 TCGA-22-5483-01 8 94731011 94731011 T G FAM92A1 Missense_Mutation p.L218V 0.40 deleterious(0) possibly_damaging(0.718) TCGA-22-5483-01 9 133760024 133760024 C - ABL1 Frame_Shift_Del p.R804Gfs*3 0.46 TCGA-22-5483-01 9 14720363 14720363 C T CER1 Missense_Mutation p.E177K 0.73 deleterious(0) probably_damaging(0.948) TCGA-22-5483-01 9 26990193 26990193 C T IFT74 Missense_Mutation p.A196V 0.65 tolerated(0.23) benign(0.08) TCGA-22-5483-01 9 35751726 35751726 G A RGP1 Missense_Mutation p.G246E 0.69 tolerated(0.09) benign(0.005) TCGA-22-5483-01 9 5339659 5339659 C T RLN1 Missense_Mutation p.D30N 0.69 deleterious(0.04) benign(0.003) TCGA-22-5483-01 9 73218257 73218257 C T TRPM3 Splice_Site p.X920_splice 0.37 TCGA-22-5483-01 9 91262560 91262560 C A RP13-60M5.2 RNA 0.47 TCGA-22-5483-01 9 91686138 91686138 G C SHC3 Missense_Mutation p.I253M 0.42 deleterious(0) probably_damaging(0.987) TCGA-22-5483-01 9 91930206 91930206 G T CKS2 Nonsense_Mutation p.E61* 0.11 TCGA-22-5483-01 X 134494524 134494524 C A ZNF449 Missense_Mutation p.F360L 0.06 deleterious(0.02) possibly_damaging(0.563) TCGA-22-5483-01 X 134494645 134494645 C A ZNF449 Missense_Mutation p.H401N 0.08 deleterious(0.01) probably_damaging(0.913) TCGA-22-5483-01 X 144906247 144906247 C T SLITRK2 Silent p.S768S 0.07 TCGA-22-5483-01 X 2408703 2408703 G A ZBED1 Missense_Mutation p.R20C 0.27 deleterious(0) probably_damaging(1) TCGA-22-5483-01 X 30260297 30260297 C G MAGEB4 Silent p.R15R 0.76 TCGA-22-5483-01 X 30269226 30269226 G T MAGEB1 Missense_Mutation p.G206C 0.73 tolerated(0.12) probably_damaging(0.999) TCGA-22-5483-01 X 44879932 44879932 G T KDM6A Missense_Mutation p.G174V 0.75 deleterious(0) possibly_damaging(0.883) TCGA-22-5483-01 X 54982613 54982613 T C PFKFB1 Missense_Mutation p.Y204C 0.67 probably_damaging(0.994) TCGA-22-5483-01 X 62944570 62944570 C G ARHGEF9 Missense_Mutation p.V11L 0.63 deleterious(0.05) benign(0.346) TCGA-22-5483-01 X 86887341 86887341 G T KLHL4 Missense_Mutation p.G486C 0.84 deleterious(0) probably_damaging(1) TCGA-22-5483-01 Y 5369104 5369104 C G PCDH11Y Missense_Mutation p.R1046G 0.72 deleterious(0) possibly_damaging(0.628) TCGA-22-5485-01 10 104242820 104242820 G T ACTR1A Missense_Mutation p.T233K 0.42 tolerated(0.74) benign(0.169) TCGA-22-5485-01 10 118231351 118231351 G T PNLIPRP3 Missense_Mutation p.G378C 0.47 deleterious(0.03) benign(0.032) TCGA-22-5485-01 10 13736020 13736020 C T FRMD4A Missense_Mutation p.R332H 0.05 deleterious(0) probably_damaging(0.998) TCGA-22-5485-01 10 32856664 32856664 G A CCDC7 Missense_Mutation p.G422R 0.41 tolerated(0.08) possibly_damaging(0.803) TCGA-22-5485-01 10 38241972 38241972 C A ZNF25 Missense_Mutation p.G152W 0.28 deleterious(0) probably_damaging(0.963) TCGA-22-5485-01 10 50724411 50724411 T A ERCC6-PGBD3 Silent p.I718I 0.33 TCGA-22-5485-01 10 54529053 54529053 G - MBL2 Frame_Shift_Del p.S110Qfs*31 0.27 TCGA-22-5485-01 10 61836114 61836114 C A ANK3 Missense_Mutation p.A1509S 0.24 benign(0.042) TCGA-22-5485-01 10 67680245 67680245 G T CTNNA3 Missense_Mutation p.P844Q 0.38 deleterious(0.01) unknown(0) TCGA-22-5485-01 10 71974268 71974268 T C PPA1 Silent p.E124E 0.30 TCGA-22-5485-01 10 81319118 81319118 A T SFTPA2 Missense_Mutation p.L41Q 0.45 tolerated(0.08) possibly_damaging(0.511) TCGA-22-5485-01 10 87362103 87362103 G T GRID1 Missense_Mutation p.P986H 0.54 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-22-5485-01 10 89693002 89693003 - A PTEN Frame_Shift_Ins p.V166Sfs*14 0.47 TCGA-22-5485-01 11 106681023 106681023 T A GUCY1A2 Missense_Mutation p.D463V 0.33 deleterious(0) probably_damaging(0.999) TCGA-22-5485-01 11 117301686 117301686 C A DSCAML1 Missense_Mutation p.R1873L 0.39 deleterious(0) probably_damaging(1) TCGA-22-5485-01 11 120317760 120317760 G A ARHGEF12 Missense_Mutation p.A519T 0.24 deleterious(0) probably_damaging(0.998) TCGA-22-5485-01 11 121485765 121485765 G T SORL1 Splice_Site p.X1868_splice 0.11 TCGA-22-5485-01 11 122945410 122945410 C T CLMP Missense_Mutation p.R274Q 0.26 deleterious(0.03) probably_damaging(0.997) TCGA-22-5485-01 11 123901029 123901029 C A OR10G8 Missense_Mutation p.H234N 0.25 deleterious(0.01) benign(0.128) TCGA-22-5485-01 11 124252446 124252447 CC G OR8B2 Frame_Shift_Del p.G265Hfs*27 0.21 TCGA-22-5485-01 11 1254275 1254275 C G MUC5B Missense_Mutation p.R700G 0.33 unknown(0) TCGA-22-5485-01 11 14889073 14889073 G A PDE3B Missense_Mutation p.G970S 0.42 deleterious(0.01) probably_damaging(1) TCGA-22-5485-01 11 30358242 30358242 C A ARL14EP Missense_Mutation p.S228Y 0.29 deleterious(0) probably_damaging(0.996) TCGA-22-5485-01 11 36440842 36440842 G A PRR5L Missense_Mutation p.D95N 0.38 deleterious(0.01) probably_damaging(0.991) TCGA-22-5485-01 11 56019884 56019884 T A OR5T3 Missense_Mutation p.I70K 0.29 deleterious(0.04) benign(0.062) TCGA-22-5485-01 11 56020603 56020603 A G OR5T3 Missense_Mutation p.I310V 0.28 tolerated(0.63) benign(0.1) TCGA-22-5485-01 11 57087987 57087988 GG - TNKS1BP1 Frame_Shift_Del p.P98Lfs*8 0.32 TCGA-22-5485-01 11 6023346 6023346 T C OR56A4 Missense_Mutation p.I345V 0.27 tolerated(0.2) benign(0.159) TCGA-22-5485-01 11 6245157 6245159 CCT - FAM160A2 In_Frame_Del p.E153del 0.41 TCGA-22-5485-01 11 6281297 6281297 G T CCKBR Missense_Mutation p.A47S 0.23 tolerated(0.63) benign(0.001) TCGA-22-5485-01 11 65810520 65810520 G A GAL3ST3 Missense_Mutation p.R252W 0.50 deleterious(0) probably_damaging(0.995) TCGA-22-5485-01 11 65820501 65820501 G T SF3B2 Missense_Mutation p.G62C 0.25 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-22-5485-01 11 6661831 6661831 C A DCHS1 Silent p.G338G 0.23 TCGA-22-5485-01 11 76893183 76893183 G A MYO7A Missense_Mutation p.D1031N 0.39 tolerated(0.19) benign(0.394) TCGA-22-5485-01 11 93454925 93454925 G A KIAA1731 Intron 0.11 TCGA-22-5485-01 12 102569288 102569288 G T PARPBP Silent p.V283V 0.37 TCGA-22-5485-01 12 113357379 113357392 AAAGGGCTCCAGTG TT OAS1 In_Frame_Del p.K376_C380delinsF 0.35 TCGA-22-5485-01 12 22065959 22065959 C A ABCC9 Missense_Mutation p.W286C 0.28 deleterious(0) probably_damaging(0.919) TCGA-22-5485-01 12 2927299 2927299 G T ITFG2 Missense_Mutation p.G88C 0.39 deleterious(0) probably_damaging(0.995) TCGA-22-5485-01 12 57112430 57112430 C A NACA Intron 0.29 TCGA-22-5485-01 12 62954653 62954653 A T MON2 Silent p.L1264L 0.40 TCGA-22-5485-01 12 71519129 71519129 C A TSPAN8 Missense_Mutation p.Q233H 0.38 deleterious(0) probably_damaging(0.999) TCGA-22-5485-01 12 7295832 7295832 A G CLSTN3 Missense_Mutation p.Q591R 0.36 tolerated(0.36) benign(0.006) TCGA-22-5485-01 12 78400211 78400211 G T NAV3 Missense_Mutation p.G298V 0.29 deleterious(0.01) benign(0.041) TCGA-22-5485-01 12 81110943 81110943 C A MYF5 Missense_Mutation p.P34Q 0.46 tolerated(0.05) benign(0.317) TCGA-22-5485-01 13 21742230 21742230 C T SKA3 Missense_Mutation p.E214K 0.51 deleterious(0.01) probably_damaging(0.96) TCGA-22-5485-01 13 33233343 33233343 A G PDS5B Missense_Mutation p.I184V 0.52 deleterious(0.05) benign(0.015) TCGA-22-5485-01 13 36049443 36049443 A G MAB21L1 Missense_Mutation p.V278A 0.57 deleterious(0.01) benign(0.142) TCGA-22-5485-01 14 107083459 107083459 T A IGHV4-59 Missense_Mutation p.S49C 0.35 deleterious_low_confidence(0) possibly_damaging(0.859) TCGA-22-5485-01 14 22600958 22600958 T A TRAV8-7 Missense_Mutation p.S101R 0.38 tolerated(0.05) benign(0.341) TCGA-22-5485-01 14 23862179 23862179 G C MYH6 Missense_Mutation p.Q1065E 0.23 deleterious(0.01) possibly_damaging(0.55) TCGA-22-5485-01 14 24897140 24897140 G C CBLN3 Missense_Mutation p.P158R 0.38 tolerated(0.38) possibly_damaging(0.474) TCGA-22-5485-01 14 33015113 33015113 G T AKAP6 Missense_Mutation p.K418N 0.38 tolerated(0.06) benign(0.016) TCGA-22-5485-01 14 42357212 42357212 A G LRFN5 Missense_Mutation p.R462G 0.18 deleterious(0) probably_damaging(0.96) TCGA-22-5485-01 14 44975317 44975317 G T FSCB Missense_Mutation p.Q292K 0.29 tolerated(0.28) benign(0.02) TCGA-22-5485-01 14 52493960 52493960 G T NID2 Missense_Mutation p.A878D 0.26 tolerated(0.15) benign(0.15) TCGA-22-5485-01 14 52534714 52534714 C T NID2 Silent p.V132V 0.41 TCGA-22-5485-01 14 76549569 76549569 G A IFT43 Splice_Site p.X154_splice 0.39 TCGA-22-5485-01 14 92471524 92471524 A T TRIP11 Silent p.S932S 0.33 TCGA-22-5485-01 15 31776570 31776570 C A OTUD7A Missense_Mutation p.G570C 0.25 deleterious(0) probably_damaging(1) TCGA-22-5485-01 15 33941357 33941357 T A RYR3 Missense_Mutation p.Y1355N 0.35 probably_damaging(0.993) TCGA-22-5485-01 15 54586235 54586235 G T UNC13C Nonsense_Mutation p.G1321* 0.34 TCGA-22-5485-01 16 29845346 29845346 G A MVP Missense_Mutation p.R179H 0.46 deleterious(0.02) probably_damaging(0.998) TCGA-22-5485-01 16 30409275 30409275 G A ZNF48 Missense_Mutation p.R235H 0.09 deleterious(0.02) probably_damaging(0.997) TCGA-22-5485-01 16 30780504 30780504 C T RNF40 Intron 0.36 TCGA-22-5485-01 16 30939884 30939884 A T FBXL19 Missense_Mutation p.R262W 0.31 deleterious(0.03) benign(0.081) TCGA-22-5485-01 16 31228292 31228292 G A PYDC1 Missense_Mutation p.L20F 0.43 tolerated(0.4) benign(0.253) TCGA-22-5485-01 16 53907755 53907755 G T FTO Missense_Mutation p.S318I 0.24 deleterious(0) probably_damaging(0.959) TCGA-22-5485-01 16 57713122 57713122 G T GPR97 Missense_Mutation p.V176L 0.32 deleterious(0.02) benign(0.415) TCGA-22-5485-01 16 58287931 58287931 G T CCDC113 Silent p.R86R 0.24 TCGA-22-5485-01 16 81214831 81214831 C A PKD1L2 5'UTR 0.22 TCGA-22-5485-01 17 10415213 10415213 C A MYH1 Missense_Mutation p.K453N 0.75 deleterious(0) probably_damaging(1) TCGA-22-5485-01 17 17131272 17131272 C A FLCN Silent p.A60A 0.67 TCGA-22-5485-01 17 37883558 37883558 G T ERBB2 Missense_Mutation p.G1057V 0.06 tolerated(0.1) benign(0.027) TCGA-22-5485-01 17 4575276 4575276 C A PELP1 Missense_Mutation p.G1004W 0.80 unknown(0) TCGA-22-5485-01 17 57272786 57272786 G T PRR11 Missense_Mutation p.R280L 0.62 deleterious(0.01) possibly_damaging(0.703) TCGA-22-5485-01 17 58126990 58126990 G T HEATR6 Missense_Mutation p.A833E 0.06 tolerated(0.08) benign(0.309) TCGA-22-5485-01 17 64210612 64210612 T A APOH Missense_Mutation p.Q314L 0.67 deleterious(0.02) benign(0.376) TCGA-22-5485-01 17 7578443 7578444 - GAT TP53 In_Frame_Ins p.I162dup 0.75 TCGA-22-5485-01 18 21736470 21736470 A T CABYR Intron 0.34 TCGA-22-5485-01 18 335123 335123 C T COLEC12 Missense_Mutation p.G479S 0.42 deleterious(0) unknown(0) TCGA-22-5485-01 18 40850469 40850469 A C SYT4 Missense_Mutation p.V372G 0.39 deleterious(0) probably_damaging(0.965) TCGA-22-5485-01 18 7049209 7049209 T A LAMA1 Silent p.S212S 0.32 TCGA-22-5485-01 18 9570624 9570624 T C PPP4R1 Silent p.S368S 0.41 TCGA-22-5485-01 19 14951778 14951778 G - OR7A10 Frame_Shift_Del p.F305Sfs*? 0.46 TCGA-22-5485-01 19 16687644 16687644 G A MED26 Missense_Mutation p.P333S 0.94 tolerated(0.36) benign(0.001) TCGA-22-5485-01 19 1800301 1800301 G C ATP8B3 Missense_Mutation p.L434V 0.21 tolerated(0.66) benign(0.074) TCGA-22-5485-01 19 2213690 2213690 G T DOT1L Intron 0.46 TCGA-22-5485-01 19 22363549 22363549 G A ZNF676 Missense_Mutation p.L324F 0.13 deleterious(0.03) probably_damaging(0.996) TCGA-22-5485-01 19 23542727 23542727 T C ZNF91 Silent p.G1018G 0.56 TCGA-22-5485-01 19 34699941 34699941 A G LSM14A Missense_Mutation p.T175A 0.20 tolerated(0.48) benign(0.002) TCGA-22-5485-01 19 36259086 36259086 C T C19orf55 Missense_Mutation p.S417F 0.14 unknown(0) TCGA-22-5485-01 19 37117851 37117851 C A ZNF382 Missense_Mutation p.P351H 0.15 deleterious(0) probably_damaging(0.996) TCGA-22-5485-01 19 38959614 38959614 C A RYR1 Silent p.R1130R 0.61 TCGA-22-5485-01 19 39207810 39207810 G T ACTN4 Nonsense_Mutation p.E333* 0.42 TCGA-22-5485-01 19 42399546 42399546 A T ARHGEF1 Silent p.P349P 0.19 TCGA-22-5485-01 19 43372240 43372240 G - PSG1 Frame_Shift_Del p.P419Qfs*6 0.19 TCGA-22-5485-01 19 43762370 43762370 C A PSG9 Missense_Mutation p.M409I 0.19 tolerated(0.81) benign(0.004) TCGA-22-5485-01 19 45322052 45322052 G T BCAM Missense_Mutation p.D417Y 0.08 deleterious(0.01) probably_damaging(0.933) TCGA-22-5485-01 19 47844851 47844851 C A C5AR2 Silent p.L265L 0.19 TCGA-22-5485-01 19 49207243 49207244 - A FUT2 Frame_Shift_Ins 0.31 TCGA-22-5485-01 19 49840422 49840422 C T CD37 Missense_Mutation p.L96F 0.58 tolerated(0.06) probably_damaging(1) TCGA-22-5485-01 19 52857617 52857617 A G ZNF610 Missense_Mutation p.R102G 0.23 tolerated(0.13) benign(0.037) TCGA-22-5485-01 19 56538872 56538872 C A NLRP5 Missense_Mutation p.R425S 0.20 tolerated(0.08) probably_damaging(0.96) TCGA-22-5485-01 19 7810680 7810680 C G CD209 Missense_Mutation p.G158R 0.45 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-22-5485-01 19 8319436 8319436 G T CERS4 Missense_Mutation p.R76M 0.31 tolerated(0.28) benign(0.102) TCGA-22-5485-01 19 9578620 9578620 G A ZNF560 Missense_Mutation p.H335Y 0.74 tolerated(1) benign(0.087) TCGA-22-5485-01 1 110754721 110754721 C A KCNC4 Silent p.A200A 0.50 TCGA-22-5485-01 1 150477408 150477408 T C TARS2 Missense_Mutation p.V616A 0.22 tolerated(0.21) benign(0.06) TCGA-22-5485-01 1 152129048 152129048 T A RPTN Missense_Mutation p.Q176L 0.49 tolerated(0.06) possibly_damaging(0.885) TCGA-22-5485-01 1 155252407 155252407 C T HCN3 Missense_Mutation p.R162W 0.40 deleterious(0) possibly_damaging(0.67) TCGA-22-5485-01 1 173703000 173703000 A T KLHL20 Missense_Mutation p.I58F 0.20 deleterious(0.03) benign(0.025) TCGA-22-5485-01 1 173907969 173907969 T A RC3H1 Missense_Mutation p.S1098C 0.53 deleterious_low_confidence(0.03) possibly_damaging(0.695) TCGA-22-5485-01 1 186072723 186072723 G T HMCN1 Missense_Mutation p.D3565Y 0.52 probably_damaging(0.999) TCGA-22-5485-01 1 186072724 186072724 A T HMCN1 Missense_Mutation p.D3565V 0.53 probably_damaging(0.999) TCGA-22-5485-01 1 196461394 196461394 G C KCNT2 Nonsense_Mutation p.S58* 0.45 TCGA-22-5485-01 1 197404496 197404496 G A CRB1 Missense_Mutation p.G1168E 0.19 deleterious(0) probably_damaging(1) TCGA-22-5485-01 1 201687855 201687855 A T NAV1 Missense_Mutation p.M400L 0.54 tolerated(1) benign(0.001) TCGA-22-5485-01 1 207871122 207871122 C A CR1L Missense_Mutation p.S349Y 0.18 tolerated(0.05) possibly_damaging(0.853) TCGA-22-5485-01 1 21031280 21031280 G C KIF17 Silent p.T261T 0.40 TCGA-22-5485-01 1 210948775 210948775 G A KCNH1 Missense_Mutation p.A676V 0.07 tolerated(0.2) possibly_damaging(0.785) TCGA-22-5485-01 1 21139701 21139701 G C EIF4G3 Missense_Mutation p.P1466R 0.35 tolerated(0.08) possibly_damaging(0.52) TCGA-22-5485-01 1 216256872 216256872 A G USH2A Missense_Mutation p.F1742L 0.28 benign(0.007) TCGA-22-5485-01 1 216595381 216595381 G A USH2A Missense_Mutation p.L100F 0.25 probably_damaging(0.979) TCGA-22-5485-01 1 228873446 228873446 G A RHOU Missense_Mutation p.V97M 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-22-5485-01 1 229738436 229738436 C A TAF5L Missense_Mutation p.D160Y 0.49 deleterious(0.01) possibly_damaging(0.878) TCGA-22-5485-01 1 230937412 230937412 C G CAPN9 3'UTR 0.52 TCGA-22-5485-01 1 23189667 23189667 C A EPHB2 Missense_Mutation p.L317M 0.36 deleterious(0.01) benign(0.286) TCGA-22-5485-01 1 237778080 237778080 G T RYR2 Missense_Mutation p.K1884N 0.41 benign(0.021) TCGA-22-5485-01 1 240256012 240256012 G A FMN2 Silent p.Q201Q 0.20 TCGA-22-5485-01 1 240519117 240519117 C A FMN2 Silent p.A1589A 0.39 TCGA-22-5485-01 1 241146395 241146395 T C RGS7 Silent p.L70L 0.36 TCGA-22-5485-01 1 243581361 243581361 A G SDCCAG8 Silent p.Q612Q 0.23 TCGA-22-5485-01 1 248343811 248343811 C A OR2M2 Missense_Mutation p.A175D 0.48 tolerated(0.97) benign(0.029) TCGA-22-5485-01 1 25599144 25599144 G A RHD Missense_Mutation p.A36T 0.13 tolerated(0.78) benign(0.016) TCGA-22-5485-01 1 38082241 38082241 G T RSPO1 Missense_Mutation p.N67K 0.22 tolerated(0.14) benign(0.166) TCGA-22-5485-01 1 43775104 43775104 G C TIE1 Missense_Mutation p.E412Q 0.25 tolerated(0.7) benign(0.071) TCGA-22-5485-01 1 45501360 45501360 C T ZSWIM5 Missense_Mutation p.R764K 0.45 deleterious(0) unknown(0) TCGA-22-5485-01 1 45980646 45980646 T C PRDX1 Silent p.Q94Q 0.34 TCGA-22-5485-01 1 7724962 7724962 G A CAMTA1 Silent p.G785G 0.32 TCGA-22-5485-01 1 9323588 9323588 A G H6PD Missense_Mutation p.N346D 0.40 tolerated(0.09) benign(0.061) TCGA-22-5485-01 1 99422237 99422237 G T LPPR5 Missense_Mutation p.Q100K 0.29 tolerated(0.18) benign(0.079) TCGA-22-5485-01 20 17489538 17489538 G T BFSP1 Missense_Mutation p.A244E 0.44 deleterious(0.03) probably_damaging(0.953) TCGA-22-5485-01 20 2796209 2796209 C A C20orf141 Missense_Mutation p.R96S 0.30 deleterious(0.01) benign(0.004) TCGA-22-5485-01 20 45865220 45865220 G T ZMYND8 Silent p.S856S 0.31 TCGA-22-5485-01 20 45905064 45905064 T C ZMYND8 Missense_Mutation p.S492G 0.61 deleterious_low_confidence(0.05) benign(0.001) TCGA-22-5485-01 20 50049292 50049292 G A NFATC2 Silent p.V678V 0.15 TCGA-22-5485-01 20 56093727 56093727 G T CTCFL Intron 0.28 TCGA-22-5485-01 20 61288044 61288044 G A SLCO4A1 Missense_Mutation p.A80T 0.33 tolerated(0.37) benign(0.02) TCGA-22-5485-01 20 62200693 62200693 C A HELZ2 Missense_Mutation p.R299L 0.29 deleterious(0) probably_damaging(0.998) TCGA-22-5485-01 21 31654347 31654347 C G KRTAP24-1 3'UTR 0.36 TCGA-22-5485-01 21 32496948 32496948 T C TIAM1 Missense_Mutation p.R1400G 0.23 deleterious(0) probably_damaging(0.989) TCGA-22-5485-01 21 44323435 44323435 G A NDUFV3 Missense_Mutation p.V105M 0.33 tolerated(0.33) benign(0.009) TCGA-22-5485-01 21 47418320 47418320 G T COL6A1 Silent p.P528P 0.28 TCGA-22-5485-01 22 16279297 16279297 C A POTEH Missense_Mutation p.G309V 0.08 deleterious(0) probably_damaging(0.999) TCGA-22-5485-01 22 24837043 24837043 C A ADORA2A Silent p.V275V 0.30 TCGA-22-5485-01 22 43926757 43926757 G T EFCAB6 Missense_Mutation p.R1441S 0.38 deleterious(0) probably_damaging(1) TCGA-22-5485-01 22 46932037 46932037 T G CELSR1 Missense_Mutation p.K344T 0.25 tolerated(0.27) benign(0.215) TCGA-22-5485-01 2 109087168 109087168 T C GCC2 Silent p.G461G 0.39 TCGA-22-5485-01 2 141232773 141232773 T C LRP1B Missense_Mutation p.R3187G 0.49 benign(0.152) TCGA-22-5485-01 2 141473550 141473550 T A LRP1B Silent p.P2005P 0.37 TCGA-22-5485-01 2 170013975 170013975 G A LRP2 Silent p.C3975C 0.38 TCGA-22-5485-01 2 197777635 197777635 G A PGAP1 Missense_Mutation p.P207L 0.32 deleterious(0) probably_damaging(0.994) TCGA-22-5485-01 2 220167078 220167078 G A PTPRN Missense_Mutation p.H259Y 0.36 tolerated(0.2) benign(0.209) TCGA-22-5485-01 2 231775189 231775189 C A GPR55 Silent p.V163V 0.29 TCGA-22-5485-01 2 241631698 241631698 C A AQP12A Missense_Mutation p.Q111K 0.35 tolerated(0.55) benign(0.021) TCGA-22-5485-01 2 31572970 31572970 C A XDH Silent p.G917G 0.30 TCGA-22-5485-01 2 33590512 33590514 CTG TT LTBP1 Frame_Shift_Del p.C1552Ffs*16 0.26 TCGA-22-5485-01 2 49190309 49190309 G A FSHR Missense_Mutation p.H551Y 0.28 deleterious(0.03) benign(0.389) TCGA-22-5485-01 2 72360206 72360206 C A CYP26B1 Silent p.L364L 0.21 TCGA-22-5485-01 2 89309502 89309502 A T IGKV1-9 Missense_Mutation p.C110S 0.35 deleterious(0.01) possibly_damaging(0.693) TCGA-22-5485-01 2 96260035 96260035 T G TRIM43 Silent p.S88S 0.27 TCGA-22-5485-01 3 121215658 121215662 CATAA - POLQ Frame_Shift_Del p.Y758Rfs*36 0.32 TCGA-22-5485-01 3 122525799 122525799 T C DIRC2 Splice_Site p.X146_splice 0.48 TCGA-22-5485-01 3 134251738 134251738 T C CEP63 Missense_Mutation p.I146T 0.41 deleterious(0) probably_damaging(0.915) TCGA-22-5485-01 3 139085517 139085533 CCAGGACTGAAACCAGC - COPB2 Frame_Shift_Del p.L588Ifs*11 0.23 TCGA-22-5485-01 3 165504057 165504057 G A BCHE Silent p.V520V 0.20 TCGA-22-5485-01 3 172534584 172534584 A C ECT2 Missense_Mutation p.D871A 0.22 tolerated(0.75) benign(0.04) TCGA-22-5485-01 3 179754368 179754368 T A PEX5L Missense_Mutation p.Q7L 0.19 deleterious_low_confidence(0) benign(0) TCGA-22-5485-01 3 183975455 183975455 G T ECE2 Missense_Mutation p.G131C 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-22-5485-01 3 194061904 194061904 G A CPN2 Nonsense_Mutation p.Q510* 0.22 TCGA-22-5485-01 3 46414528 46414528 T C CCR5 Silent p.F45F 0.56 TCGA-22-5485-01 3 97868652 97868652 C T OR5H14 Silent p.C141C 0.23 TCGA-22-5485-01 4 108940716 108940716 A G HADH Missense_Mutation p.N147S 0.04 deleterious(0) probably_damaging(1) TCGA-22-5485-01 4 134073843 134073843 C T PCDH10 Missense_Mutation p.H850Y 0.64 deleterious(0.04) benign(0.191) TCGA-22-5485-01 4 155487721 155487721 G C FGB Missense_Mutation p.E129D 0.61 tolerated(0.47) benign(0) TCGA-22-5485-01 4 164393493 164393493 G C TKTL2 Missense_Mutation p.A465G 0.49 tolerated(0.06) probably_damaging(0.932) TCGA-22-5485-01 4 178274865 178274865 C G NEIL3 Missense_Mutation p.N481K 0.37 tolerated(0.16) benign(0.006) TCGA-22-5485-01 4 183714330 183714330 C T TENM3 Missense_Mutation p.R2169C 0.41 deleterious(0) possibly_damaging(0.876) TCGA-22-5485-01 4 187455106 187455106 C A MTNR1A Missense_Mutation p.D264Y 0.37 deleterious(0.03) benign(0.035) TCGA-22-5485-01 4 2306729 2306729 C A ZFYVE28 Silent p.G446G 0.33 TCGA-22-5485-01 4 57181591 57181591 C - KIAA1211 Frame_Shift_Del p.G643Afs*34 0.65 TCGA-22-5485-01 5 102433118 102433118 T C GIN1 Missense_Mutation p.H303R 0.61 tolerated(0.39) benign(0.001) TCGA-22-5485-01 5 11346508 11346508 A G CTNND2 Missense_Mutation p.I535T 0.26 deleterious(0) possibly_damaging(0.905) TCGA-22-5485-01 5 135692755 135692755 C A TRPC7 Silent p.G107G 0.58 TCGA-22-5485-01 5 140242302 140242302 T A AC005609.1 3'UTR 0.33 TCGA-22-5485-01 5 140530850 140530850 G T PCDHB6 Missense_Mutation p.V338L 0.46 tolerated(0.19) benign(0.014) TCGA-22-5485-01 5 149502632 149502632 G A PDGFRB Missense_Mutation p.A719V 0.53 tolerated(0.09) benign(0.102) TCGA-22-5485-01 5 156533809 156533809 C A HAVCR2 Missense_Mutation p.V75L 0.55 tolerated(0.19) benign(0.047) TCGA-22-5485-01 5 172560798 172560798 T C CREBRF 3'UTR 0.58 TCGA-22-5485-01 5 178410074 178410074 C T GRM6 Missense_Mutation p.S758N 0.18 tolerated(0.86) benign(0.074) TCGA-22-5485-01 5 178410091 178410091 G A GRM6 Silent p.I752I 0.43 TCGA-22-5485-01 5 24492942 24492942 T A CDH10 Silent p.T536T 0.47 TCGA-22-5485-01 5 33944840 33944840 C - SLC45A2 Frame_Shift_Del p.T503Pfs*6 0.12 TCGA-22-5485-01 5 40852400 40852400 A T CARD6 Silent p.P322P 0.45 TCGA-22-5485-01 5 5146247 5146247 T C ADAMTS16 Silent p.Y60Y 0.30 TCGA-22-5485-01 5 56526994 56526994 A G GPBP1 Missense_Mutation p.H93R 0.15 tolerated(0.08) benign(0.234) TCGA-22-5485-01 6 117240437 117240437 C A RFX6 Missense_Mutation p.T387K 0.36 deleterious(0) probably_damaging(0.917) TCGA-22-5485-01 6 137325764 137325764 T C IL20RA Silent p.A286A 0.31 TCGA-22-5485-01 6 155451258 155451258 G C TIAM2 Missense_Mutation p.E301Q 0.44 deleterious(0.01) benign(0.224) TCGA-22-5485-01 6 159677649 159677649 A G FNDC1 Silent p.L1720L 0.40 TCGA-22-5485-01 6 167550795 167550795 G A CCR6 Silent p.Q359Q 0.29 TCGA-22-5485-01 6 170626966 170626966 T A FAM120B Missense_Mutation p.V163E 0.46 deleterious(0) probably_damaging(0.998) TCGA-22-5485-01 6 17764629 17764629 G A KIF13A Silent p.S1710S 0.40 TCGA-22-5485-01 6 22297225 22297225 G A PRL 5'UTR 0.27 TCGA-22-5485-01 6 28962782 28962782 G A ZNF311 Missense_Mutation p.A666V 0.20 tolerated_low_confidence(0.05) benign(0.01) TCGA-22-5485-01 6 32084310 32084310 T C ATF6B Missense_Mutation p.N610S 0.43 deleterious(0) probably_damaging(0.997) TCGA-22-5485-01 6 36922606 36922606 C A PI16 Missense_Mutation p.P24T 0.33 deleterious(0.04) probably_damaging(0.973) TCGA-22-5485-01 6 38754673 38754673 C T DNAH8 Missense_Mutation p.A626V 0.18 benign(0.371) TCGA-22-5485-01 6 38998258 38998258 G T DNAH8 3'UTR 0.54 TCGA-22-5485-01 6 43230656 43230656 G A TTBK1 Silent p.V518V 0.38 TCGA-22-5485-01 6 43304927 43304927 T C ZNF318 Missense_Mutation p.Q2270R 0.25 benign(0.006) TCGA-22-5485-01 6 49676880 49676880 A T CRISP2 Silent p.V10V 0.24 TCGA-22-5485-01 6 53519311 53519311 G T KLHL31 Missense_Mutation p.L254I 0.31 tolerated(0.06) probably_damaging(0.957) TCGA-22-5485-01 6 62407151 62407151 C A KHDRBS2 Nonsense_Mutation p.E301* 0.28 TCGA-22-5485-01 6 70064159 70064159 G T BAI3 Missense_Mutation p.C1165F 0.30 deleterious(0.03) benign(0.05) TCGA-22-5485-01 6 89974321 89974321 G T GABRR2 Missense_Mutation p.T299K 0.41 deleterious(0) possibly_damaging(0.687) TCGA-22-5485-01 6 90472061 90472061 T A MDN1 Missense_Mutation p.K778M 0.43 probably_damaging(0.999) TCGA-22-5485-01 6 90660143 90660143 T C BACH2 Missense_Mutation p.H561R 0.50 tolerated(0.08) benign(0.344) TCGA-22-5485-01 7 112424133 112424133 C T TMEM168 Missense_Mutation p.E250K 0.29 deleterious(0) probably_damaging(0.996) TCGA-22-5485-01 7 11514078 11514078 G A THSD7A Missense_Mutation p.S712L 0.26 tolerated(1) benign(0.206) TCGA-22-5485-01 7 11632885 11632885 C T THSD7A Missense_Mutation p.A423T 0.30 tolerated(0.27) benign(0.044) TCGA-22-5485-01 7 126173740 126173740 G T GRM8 Missense_Mutation p.R566S 0.30 deleterious(0.05) probably_damaging(0.998) TCGA-22-5485-01 7 136700521 136700521 G A CHRM2 Silent p.Q303Q 0.36 TCGA-22-5485-01 7 137569658 137569658 G A CREB3L2 Intron 0.27 TCGA-22-5485-01 7 36194244 36194244 G T EEPD1 Missense_Mutation p.G104V 0.32 tolerated(0.4) benign(0.006) TCGA-22-5485-01 7 75401237 75401237 G C CCL26 Missense_Mutation p.T53S 0.31 deleterious(0.05) possibly_damaging(0.745) TCGA-22-5485-01 7 87564408 87564408 G T ADAM22 Silent p.V51V 0.35 TCGA-22-5485-01 7 88847538 88847538 T G ZNF804B Missense_Mutation p.C60G 0.23 deleterious(0) probably_damaging(0.999) TCGA-22-5485-01 7 99802847 99802847 T C STAG3 Intron 0.32 TCGA-22-5485-01 8 144808385 144808385 T C FAM83H Silent p.P1082P 0.55 TCGA-22-5485-01 8 23423622 23423622 C T SLC25A37 Missense_Mutation p.T71I 0.53 deleterious(0) probably_damaging(1) TCGA-22-5485-01 8 59058840 59058840 C A FAM110B Silent p.P17P 0.43 TCGA-22-5485-01 8 86573759 86573759 C T REXO1L1P Silent p.Q656Q 0.10 TCGA-22-5485-01 9 112199224 112199224 G T PTPN3 Missense_Mutation p.S205Y 0.70 tolerated(0.48) probably_damaging(0.974) TCGA-22-5485-01 9 139410454 139410454 A T NOTCH1 Missense_Mutation p.Y550N 0.67 deleterious(0) probably_damaging(1) TCGA-22-5485-01 9 90584108 90584108 C A CDK20 Splice_Site p.X281_splice 0.66 TCGA-22-5485-01 X 105865895 105865895 T A CXorf57 Missense_Mutation p.S220T 0.30 tolerated(0.14) probably_damaging(0.986) TCGA-22-5485-01 X 106205335 106205335 G T MORC4 Missense_Mutation p.T388K 0.31 deleterious(0) probably_damaging(0.912) TCGA-22-5485-01 X 109414655 109414655 C A TMEM164 Nonsense_Mutation p.Y198* 0.27 TCGA-22-5485-01 X 109696915 109696915 T A RGAG1 Missense_Mutation p.S1024T 0.34 deleterious(0.05) benign(0.27) TCGA-22-5485-01 X 122759797 122759797 G A THOC2 Missense_Mutation p.T1008I 0.44 deleterious(0) probably_damaging(0.967) TCGA-22-5485-01 X 130218915 130218915 G T ARHGAP36 Missense_Mutation p.D278Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-22-5485-01 X 135309466 135309466 C A MAP7D3 Nonsense_Mutation p.E671* 0.32 TCGA-22-5485-01 X 135958790 135958790 A G RBMX Missense_Mutation p.F138S 0.32 deleterious(0.02) benign(0.034) TCGA-22-5485-01 X 149887119 149887120 - GGCA MTMR1 Frame_Shift_Ins p.Q94Gfs*15 0.30 TCGA-22-5485-01 X 153137710 153137710 G T L1CAM Silent p.G99G 0.42 TCGA-22-5485-01 X 17750482 17750482 C G NHS Silent p.R1597R 0.36 TCGA-22-5485-01 X 37961665 37961665 G A SYTL5 Missense_Mutation p.R378H 0.32 tolerated(0.44) benign(0.001) TCGA-22-5485-01 X 38226644 38226644 T A OTC Missense_Mutation p.S60T 0.33 deleterious(0.04) benign(0.033) TCGA-22-5485-01 X 38268031 38268031 G A OTC Missense_Mutation p.E234K 0.33 tolerated(0.44) benign(0.005) TCGA-22-5485-01 X 47104082 47104082 A G USP11 Silent p.E658E 0.33 TCGA-22-5485-01 X 48776157 48776157 G A PIM2 5'UTR 0.12 TCGA-22-5485-01 X 54952922 54952922 G C TRO Missense_Mutation p.A553P 0.34 deleterious(0.02) unknown(0) TCGA-22-5485-01 X 5811526 5811526 G A NLGN4X Missense_Mutation p.P595S 0.38 deleterious(0) probably_damaging(0.946) TCGA-22-5485-01 X 64749617 64749617 A C LAS1L Missense_Mutation p.V219G 0.27 deleterious(0.01) benign(0.272) TCGA-22-5485-01 X 69255516 69255516 C T EDA 3'UTR 0.38 TCGA-22-5485-01 X 70347886 70347886 G T MED12 Missense_Mutation p.S1042I 0.26 benign(0.002) TCGA-22-5485-01 X 83128311 83128311 G C CYLC1 Missense_Mutation p.D199H 0.41 tolerated(0.06) probably_damaging(0.934) TCGA-22-5485-01 X 96203955 96203955 C A DIAPH2 Silent p.R511R 0.21 TCGA-22-5485-01 X 99854654 99854654 C G TNMD Silent p.V298V 0.44 TCGA-22-5489-01 10 100018931 100018931 C A LOXL4 Silent p.L252L 0.17 TCGA-22-5489-01 10 101448486 101448486 G C ENTPD7 Missense_Mutation p.G230R 0.28 deleterious(0) probably_damaging(0.992) TCGA-22-5489-01 10 108367015 108367015 A G SORCS1 Missense_Mutation p.L1025P 0.27 tolerated(0.17) probably_damaging(0.976) TCGA-22-5489-01 10 112270038 112270038 T G DUSP5 Missense_Mutation p.S337A 0.17 tolerated(0.26) benign(0.003) TCGA-22-5489-01 10 16979726 16979726 T C CUBN Missense_Mutation p.T1931A 0.15 tolerated(0.72) benign(0.034) TCGA-22-5489-01 10 17087013 17087013 T C CUBN Missense_Mutation p.Y1222C 0.22 deleterious(0) probably_damaging(0.998) TCGA-22-5489-01 10 21169795 21169795 G A NEBL Silent p.F136F 0.15 TCGA-22-5489-01 10 23319669 23319669 G T ARMC3 Silent p.V730V 0.24 TCGA-22-5489-01 10 47942065 47942065 G T FAM21B Missense_Mutation p.W843L 0.22 tolerated(0.78) probably_damaging(0.954) TCGA-22-5489-01 10 5009331 5009331 A G AKR1C1 Intron 0.17 TCGA-22-5489-01 10 871190 871190 T C LARP4B Silent p.E433E 0.26 TCGA-22-5489-01 10 89720808 89720808 T A PTEN Nonsense_Mutation p.L320* 0.23 TCGA-22-5489-01 10 96121573 96121573 G A NOC3L Silent p.V22V 0.27 TCGA-22-5489-01 11 105483132 105483132 C A GRIA4 Missense_Mutation p.T73K 0.07 tolerated(0.06) benign(0.355) TCGA-22-5489-01 11 113111520 113111520 G T NCAM1 Intron 0.16 TCGA-22-5489-01 11 118971749 118971749 A G DPAGT1 Silent p.C87C 0.27 TCGA-22-5489-01 11 124440849 124440849 C A OR8A1 Silent p.T295T 0.20 TCGA-22-5489-01 11 134181039 134181039 G A GLB1L3 Nonsense_Mutation p.W421* 0.26 TCGA-22-5489-01 11 3028114 3028114 T C CARS Missense_Mutation p.H715R 0.04 tolerated(0.73) benign(0.001) TCGA-22-5489-01 11 47330152 47330152 A G MADD Missense_Mutation p.H1257R 0.27 tolerated(0.15) benign(0.272) TCGA-22-5489-01 11 5510741 5510741 C G OR52D1 Missense_Mutation p.H269D 0.22 tolerated(0.06) benign(0.122) TCGA-22-5489-01 11 56020461 56020461 G T OR5T3 Missense_Mutation p.K262N 0.17 deleterious(0.01) benign(0.014) TCGA-22-5489-01 11 56128131 56128131 T A OR8J1 Missense_Mutation p.S137T 0.21 deleterious(0.01) probably_damaging(0.91) TCGA-22-5489-01 11 56185408 56185408 G T OR5R1 Missense_Mutation p.L101M 0.15 tolerated(0.09) probably_damaging(0.921) TCGA-22-5489-01 11 56409733 56409733 G A OR5AP2 Silent p.L61L 0.15 TCGA-22-5489-01 11 5809149 5809149 T A OR52N1 Missense_Mutation p.R300W 0.19 deleterious(0) possibly_damaging(0.447) TCGA-22-5489-01 11 58275212 58275212 C G OR5B21 Missense_Mutation p.A123P 0.10 deleterious_low_confidence(0) possibly_damaging(0.58) TCGA-22-5489-01 11 6048454 6048454 G A OR56A1 Missense_Mutation p.L161F 0.14 tolerated(0.16) benign(0.017) TCGA-22-5489-01 11 6048757 6048757 C G OR56A1 Missense_Mutation p.A60P 0.14 tolerated(0.53) benign(0.091) TCGA-22-5489-01 11 60774086 60774086 C A CD6 Missense_Mutation p.S30R 0.25 tolerated(0.08) benign(0.01) TCGA-22-5489-01 11 63279225 63279225 A T LGALS12 Missense_Mutation p.E210V 0.18 tolerated(0.24) benign(0.287) TCGA-22-5489-01 11 65089037 65089037 G T CDC42EP2 3'UTR 0.30 TCGA-22-5489-01 11 66488695 66488695 G A SPTBN2 Missense_Mutation p.S6L 0.15 deleterious(0.01) probably_damaging(0.95) TCGA-22-5489-01 11 6650773 6650773 T A DCHS1 Missense_Mutation p.S1691C 0.14 tolerated(0.15) benign(0) TCGA-22-5489-01 11 6661603 6661603 T A DCHS1 Silent p.L414L 0.29 TCGA-22-5489-01 11 72424248 72424248 C A ARAP1 Silent p.G240G 0.16 TCGA-22-5489-01 11 85445045 85445045 C A SYTL2 Nonsense_Mutation p.E442* 0.13 TCGA-22-5489-01 11 88337890 88337890 C A GRM5 Nonsense_Mutation p.G464* 0.17 TCGA-22-5489-01 11 92714753 92714753 C A MTNR1B Missense_Mutation p.L122M 0.21 deleterious(0.04) probably_damaging(0.938) TCGA-22-5489-01 11 93097451 93097451 G C CCDC67 Missense_Mutation p.Q141H 0.11 deleterious(0.01) possibly_damaging(0.776) TCGA-22-5489-01 12 102161813 102161813 A G GNPTAB Splice_Site p.X470_splice 0.26 TCGA-22-5489-01 12 120575346 120575346 C T GCN1L1 Intron 0.21 TCGA-22-5489-01 12 132561125 132561125 C G EP400 Missense_Mutation p.S3029C 0.22 probably_damaging(0.997) TCGA-22-5489-01 12 14659942 14659942 G T PLBD1 Silent p.R433R 0.52 TCGA-22-5489-01 12 15068528 15068528 T C ERP27 Silent p.A223A 0.09 TCGA-22-5489-01 12 41330707 41330707 G T CNTN1 Silent p.A370A 0.20 TCGA-22-5489-01 12 45810620 45810620 A G ANO6 Missense_Mutation p.K738R 0.21 tolerated(0.47) probably_damaging(1) TCGA-22-5489-01 12 46320223 46320223 A G SCAF11 Silent p.F1087F 0.11 TCGA-22-5489-01 12 48368475 48368475 T C COL2A1 Missense_Mutation p.I1353V 0.25 unknown(0) TCGA-22-5489-01 12 5154154 5154154 C A KCNA5 Missense_Mutation p.L281M 0.56 tolerated(0.1) possibly_damaging(0.448) TCGA-22-5489-01 12 54925597 54925597 G - NCKAP1L Frame_Shift_Del p.G924Dfs*20 0.22 TCGA-22-5489-01 12 55042031 55042031 G A DCD Silent p.A19A 0.09 TCGA-22-5489-01 12 6679760 6679760 C G CHD4 3'UTR 0.23 TCGA-22-5489-01 12 69666975 69666975 A C CPSF6 3'UTR 0.20 TCGA-22-5489-01 12 81741394 81741394 G C PPFIA2 Missense_Mutation p.S717C 0.20 deleterious(0) possibly_damaging(0.843) TCGA-22-5489-01 12 94603390 94603390 A G PLXNC1 Silent p.V488V 0.20 TCGA-22-5489-01 12 9997097 9997097 G T KLRF1 Missense_Mutation p.S224I 0.48 deleterious(0.02) benign(0.396) TCGA-22-5489-01 13 103289502 103289502 C A TPP2 Silent p.P583P 0.05 TCGA-22-5489-01 13 25009391 25009391 T G PARP4 Silent p.T1296T 0.30 TCGA-22-5489-01 13 33225993 33225993 A T PDS5B Missense_Mutation p.E54V 0.30 deleterious(0.02) possibly_damaging(0.725) TCGA-22-5489-01 14 102446810 102446810 C A DYNC1H1 Missense_Mutation p.P295Q 0.07 benign(0.275) TCGA-22-5489-01 14 107034795 107034795 G A IGHV5-51 Silent p.I95I 0.22 TCGA-22-5489-01 14 20444720 20444720 A T OR4K15 Missense_Mutation p.K348M 0.16 deleterious_low_confidence(0) benign(0.387) TCGA-22-5489-01 14 24626559 24626559 G T RNF31 Missense_Mutation p.D852Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-22-5489-01 14 42361008 42361008 T A LRFN5 Silent p.T647T 0.19 TCGA-22-5489-01 14 55458047 55458047 G C WDHD1 Missense_Mutation p.H409D 0.21 tolerated(0.22) benign(0.004) TCGA-22-5489-01 14 64990087 64990087 G A ZBTB1 Missense_Mutation p.R622Q 0.06 deleterious(0.01) probably_damaging(0.921) TCGA-22-5489-01 14 72085580 72085580 C T SIPA1L1 Silent p.Y535Y 0.15 TCGA-22-5489-01 14 73653560 73653560 G C PSEN1 Splice_Site p.X161_splice 0.20 TCGA-22-5489-01 14 94420705 94420705 C A ASB2 Missense_Mutation p.A146S 0.19 deleterious(0.02) possibly_damaging(0.885) TCGA-22-5489-01 14 96707244 96707244 G T BDKRB2 Silent p.L193L 0.18 TCGA-22-5489-01 14 96707245 96707245 G T BDKRB2 Missense_Mutation p.V194L 0.18 tolerated(0.72) benign(0.015) TCGA-22-5489-01 15 22861915 22861915 G C TUBGCP5 Silent p.L645L 0.25 TCGA-22-5489-01 15 25425585 25425585 G T SNORD115-6 5'Flank 0.27 TCGA-22-5489-01 15 34130138 34130138 C A RYR3 Missense_Mutation p.P3986Q 0.18 probably_damaging(1) TCGA-22-5489-01 15 34396022 34396022 A T PGBD4 Silent p.A430A 0.14 TCGA-22-5489-01 15 35275459 35275459 C T ZNF770 Silent p.V59V 0.10 TCGA-22-5489-01 15 44673094 44673094 A G CASC4 Missense_Mutation p.D331G 0.27 deleterious(0.04) benign(0.004) TCGA-22-5489-01 15 50904864 50904864 C A TRPM7 Missense_Mutation p.G645C 0.21 deleterious(0) probably_damaging(0.995) TCGA-22-5489-01 15 52005588 52005588 T C SCG3 Silent p.H422H 0.16 TCGA-22-5489-01 15 62315669 62315669 G C VPS13C Missense_Mutation p.Q189E 0.18 deleterious(0) probably_damaging(0.955) TCGA-22-5489-01 15 67786640 67786640 G A IQCH Missense_Mutation p.R969H 0.16 tolerated(0.14) benign(0.023) TCGA-22-5489-01 15 73581536 73581536 G A NEO1 Missense_Mutation p.M1233I 0.14 tolerated(0.11) possibly_damaging(0.516) TCGA-22-5489-01 15 75942733 75942733 G T SNX33 Missense_Mutation p.M430I 0.29 deleterious(0.03) benign(0.005) TCGA-22-5489-01 15 78921980 78921980 T A CHRNB4 Missense_Mutation p.T223S 0.18 deleterious(0.01) benign(0.303) TCGA-22-5489-01 15 79298629 79298629 G C RASGRF1 Silent p.L671L 0.15 TCGA-22-5489-01 16 11933713 11933713 T C RSL1D1 Missense_Mutation p.T329A 0.16 tolerated(0.46) benign(0.002) TCGA-22-5489-01 16 15841519 15841519 G C MYH11 Silent p.G780G 0.20 TCGA-22-5489-01 16 24582460 24582460 A G RBBP6 Missense_Mutation p.N1358S 0.33 tolerated_low_confidence(0.31) unknown(0) TCGA-22-5489-01 16 27238086 27238086 G A NSMCE1 Silent p.P185P 0.17 TCGA-22-5489-01 16 2813737 2813737 G C SRRM2 Missense_Mutation p.D1070H 0.18 unknown(0) TCGA-22-5489-01 16 29998067 29998067 G T TAOK2 Missense_Mutation p.S825I 0.16 deleterious_low_confidence(0.01) benign(0.085) TCGA-22-5489-01 16 30006746 30006746 G C HIRIP3 Missense_Mutation p.A35G 0.25 deleterious(0) possibly_damaging(0.791) TCGA-22-5489-01 16 30970167 30970167 G A SETD1A Missense_Mutation p.V39M 0.08 probably_damaging(0.962) TCGA-22-5489-01 16 32890608 32890608 T G SLC6A10P RNA 0.20 TCGA-22-5489-01 16 56716416 56716416 C T MT1X 5'UTR 0.25 TCGA-22-5489-01 16 56902279 56902279 G T SLC12A3 Missense_Mutation p.G167V 0.50 deleterious(0) probably_damaging(0.999) TCGA-22-5489-01 16 57787007 57787007 C A KATNB1 Missense_Mutation p.Q292K 0.08 tolerated(0.94) benign(0.139) TCGA-22-5489-01 16 85100812 85100812 T G KIAA0513 Missense_Mutation p.S45R 0.38 deleterious(0) probably_damaging(0.987) TCGA-22-5489-01 17 10318686 10318686 G T MYH8 Missense_Mutation p.Q222K 0.20 deleterious(0) probably_damaging(1) TCGA-22-5489-01 17 1265201 1265201 A G YWHAE Silent p.Y122Y 0.29 TCGA-22-5489-01 17 2201171 2201171 C T SMG6 Missense_Mutation p.E676K 0.19 tolerated(0.63) benign(0.098) TCGA-22-5489-01 17 27934886 27934886 G A ANKRD13B Missense_Mutation p.G81S 0.18 deleterious(0.01) probably_damaging(0.937) TCGA-22-5489-01 17 43592221 43592221 G C LRRC37A4P RNA 0.31 TCGA-22-5489-01 17 45368430 45368430 T C ITGB3 Silent p.C412C 0.12 TCGA-22-5489-01 17 51901477 51901477 G A KIF2B Silent p.G361G 0.11 TCGA-22-5489-01 17 5357289 5357289 C G DHX33 Missense_Mutation p.E387Q 0.19 deleterious(0.01) probably_damaging(0.984) TCGA-22-5489-01 17 58121051 58121051 C - HEATR6 Frame_Shift_Del p.G1140Afs*19 0.18 TCGA-22-5489-01 17 58262956 58262956 G C USP32 Missense_Mutation p.I1233M 0.23 deleterious(0) probably_damaging(0.991) TCGA-22-5489-01 17 72218788 72218788 C T TTYH2 Silent p.L98L 0.23 TCGA-22-5489-01 17 7577022 7577022 G A TP53 Nonsense_Mutation p.R306* 0.20 TCGA-22-5489-01 18 49867237 49867237 T G DCC Missense_Mutation p.L27R 0.21 tolerated(0.27) benign(0.058) TCGA-22-5489-01 18 50985708 50985708 A G DCC Missense_Mutation p.K1167E 0.26 deleterious(0) probably_damaging(0.954) TCGA-22-5489-01 18 56247322 56247322 C A ALPK2 Missense_Mutation p.R229I 0.23 tolerated(0.22) benign(0) TCGA-22-5489-01 18 64178906 64178906 C G CDH19 Missense_Mutation p.S492T 0.12 tolerated(0.12) possibly_damaging(0.906) TCGA-22-5489-01 18 74980688 74980688 A T GALR1 Missense_Mutation p.S294C 0.21 deleterious(0) possibly_damaging(0.665) TCGA-22-5489-01 19 1356350 1356350 C T MUM1 5'UTR 0.14 TCGA-22-5489-01 19 17476301 17476301 C T PLVAP Missense_Mutation p.V325M 0.19 tolerated(0.11) benign(0.17) TCGA-22-5489-01 19 17918984 17918984 G A B3GNT3 Missense_Mutation p.R123H 0.23 deleterious(0) probably_damaging(1) TCGA-22-5489-01 19 19746283 19746283 C A GMIP Missense_Mutation p.G501C 0.19 deleterious(0) probably_damaging(0.996) TCGA-22-5489-01 19 22363818 22363818 A T ZNF676 Missense_Mutation p.F234Y 0.14 deleterious(0.01) probably_damaging(0.991) TCGA-22-5489-01 19 44792469 44792469 C G ZNF235 Missense_Mutation p.K373N 0.21 deleterious(0) probably_damaging(0.999) TCGA-22-5489-01 19 47422517 47422517 A G ARHGAP35 Missense_Mutation p.I195M 0.24 deleterious(0) benign(0.055) TCGA-22-5489-01 19 49813646 49813646 G A SLC6A16 Silent p.A179A 0.15 TCGA-22-5489-01 19 51379830 51379830 G C KLK2 Missense_Mutation p.M103I 0.29 tolerated(0.42) benign(0.022) TCGA-22-5489-01 19 51920564 51920564 T A SIGLEC10 Missense_Mutation p.T65S 0.25 tolerated(0.1) benign(0.042) TCGA-22-5489-01 19 51958760 51958760 C T SIGLEC8 Silent p.R321R 0.16 TCGA-22-5489-01 19 52941413 52941413 C G ZNF534 Missense_Mutation p.R247G 0.20 deleterious(0.03) benign(0.001) TCGA-22-5489-01 19 53612105 53612105 C A ZNF415 Missense_Mutation p.S398I 0.23 tolerated(0.28) benign(0.106) TCGA-22-5489-01 19 55086951 55086951 G T LILRA2 Missense_Mutation p.C295F 0.33 deleterious(0.01) probably_damaging(1) TCGA-22-5489-01 19 55899328 55899328 G T RPL28 Missense_Mutation p.R79L 0.38 deleterious(0.01) possibly_damaging(0.689) TCGA-22-5489-01 19 5778655 5778655 C A CATSPERD Missense_Mutation p.R789S 0.30 tolerated_low_confidence(0.16) benign(0.14) TCGA-22-5489-01 19 8130934 8130934 G A FBN3 Missense_Mutation p.R2767W 0.05 deleterious(0.01) possibly_damaging(0.776) TCGA-22-5489-01 19 8203327 8203327 C T FBN3 Silent p.P329P 0.13 TCGA-22-5489-01 1 103548491 103548491 G T COL11A1 Missense_Mutation p.H48Q 0.30 probably_damaging(0.986) TCGA-22-5489-01 1 12955444 12955444 G T PRAMEF10 Missense_Mutation p.Q79K 0.33 tolerated(0.28) benign(0.001) TCGA-22-5489-01 1 148933349 148933349 A G RP11-14N7.2 RNA 0.17 TCGA-22-5489-01 1 151143436 151143436 C A TMOD4 Missense_Mutation p.R277L 0.06 tolerated(0.28) benign(0.089) TCGA-22-5489-01 1 155288667 155288667 A T FDPS Missense_Mutation p.Y265F 0.27 tolerated(0.11) benign(0.096) TCGA-22-5489-01 1 157514128 157514128 C A FCRL5 Silent p.G256G 0.31 TCGA-22-5489-01 1 158325720 158325720 G A CD1E Missense_Mutation p.M243I 0.45 deleterious(0.01) benign(0.392) TCGA-22-5489-01 1 159902338 159902338 G A IGSF9 Silent p.T403T 0.32 TCGA-22-5489-01 1 160786504 160786504 C A LY9 Missense_Mutation p.P398Q 0.36 tolerated(0.08) probably_damaging(0.995) TCGA-22-5489-01 1 171509443 171509443 A G PRRC2C Silent p.A944A 0.17 TCGA-22-5489-01 1 174340115 174340115 A G RABGAP1L Splice_Site p.X489_splice 0.27 TCGA-22-5489-01 1 176769233 176769233 G T PAPPA2 Missense_Mutation p.D1723Y 0.21 deleterious(0) probably_damaging(0.988) TCGA-22-5489-01 1 176915118 176915118 A T ASTN1 Silent p.G731G 0.20 TCGA-22-5489-01 1 183101650 183101650 G A LAMC1 Missense_Mutation p.E1228K 0.37 tolerated(0.31) benign(0.427) TCGA-22-5489-01 1 185970840 185970840 A T HMCN1 Missense_Mutation p.T1439S 0.35 benign(0.014) TCGA-22-5489-01 1 200143433 200143433 T A NR5A2 3'UTR 0.16 TCGA-22-5489-01 1 201193908 201193908 T A IGFN1 Silent p.P3464P 0.06 TCGA-22-5489-01 1 203054889 203054889 C T MYOG Silent p.P67P 0.44 TCGA-22-5489-01 1 203134990 203134990 A G ADORA1 Missense_Mutation p.I315V 0.29 tolerated(0.63) benign(0) TCGA-22-5489-01 1 203452423 203452423 G T PRELP Missense_Mutation p.R37S 0.38 tolerated_low_confidence(0.75) benign(0.001) TCGA-22-5489-01 1 22206613 22206613 T C HSPG2 Missense_Mutation p.Y777C 0.40 probably_damaging(0.984) TCGA-22-5489-01 1 235972254 235972254 G A LYST Nonsense_Mutation p.Q622* 0.25 TCGA-22-5489-01 1 235972330 235972330 G C LYST Silent p.L596L 0.26 TCGA-22-5489-01 1 236189398 236189398 G A NID1 Silent p.P594P 0.24 TCGA-22-5489-01 1 240976970 240976970 G T RGS7 Missense_Mutation p.P302T 0.23 tolerated(0.06) probably_damaging(0.997) TCGA-22-5489-01 1 28209122 28209122 T C THEMIS2 Silent p.S429S 0.51 TCGA-22-5489-01 1 34191058 34191058 G T CSMD2 Missense_Mutation p.H823N 0.43 tolerated(0.75) possibly_damaging(0.597) TCGA-22-5489-01 1 39783071 39783071 C T MACF1 Silent p.L1263L 0.14 TCGA-22-5489-01 1 44437888 44437888 C T DPH2 Silent p.D409D 0.12 TCGA-22-5489-01 1 52705178 52705178 G A ZFYVE9 Missense_Mutation p.V697I 0.48 tolerated(0.09) probably_damaging(0.999) TCGA-22-5489-01 1 68512774 68512774 G A DIRAS3 Silent p.T69T 0.18 TCGA-22-5489-01 1 70587560 70587560 T C LRRC7 Missense_Mutation p.L1535P 0.39 deleterious(0) probably_damaging(0.991) TCGA-22-5489-01 1 75038743 75038743 G A C1orf173 Missense_Mutation p.T884I 0.37 deleterious(0) possibly_damaging(0.522) TCGA-22-5489-01 1 89578310 89578310 C G GBP2 Missense_Mutation p.D403H 0.37 deleterious(0.01) benign(0.14) TCGA-22-5489-01 20 1161626 1161626 C T TMEM74B Missense_Mutation p.G213S 0.17 tolerated(1) benign(0.026) TCGA-22-5489-01 20 20232288 20232288 G A C20orf26 Missense_Mutation p.V737I 0.18 tolerated(0.19) possibly_damaging(0.603) TCGA-22-5489-01 20 23966372 23966372 C T GGTLC1 Missense_Mutation p.V155M 0.14 deleterious(0) possibly_damaging(0.7) TCGA-22-5489-01 20 2552900 2552900 G - TMC2 Frame_Shift_Del p.M211Cfs*2 0.29 TCGA-22-5489-01 20 3515969 3515969 G T ATRN Missense_Mutation p.W160C 0.20 deleterious(0) probably_damaging(1) TCGA-22-5489-01 20 43623803 43623803 G T STK4 Nonsense_Mutation p.G200* 0.16 TCGA-22-5489-01 20 4680300 4680300 A G PRNP Missense_Mutation p.Y145C 0.21 tolerated(0.17) benign(0.138) TCGA-22-5489-01 20 57042222 57042222 G T APCDD1L Missense_Mutation p.D227E 0.11 tolerated(0.35) benign(0.023) TCGA-22-5489-01 20 57828032 57828032 G T ZNF831 Splice_Site p.X1343_splice 0.32 TCGA-22-5489-01 20 58342370 58342370 C T PHACTR3 Missense_Mutation p.S224F 0.24 tolerated(0.07) benign(0.429) TCGA-22-5489-01 20 61340778 61340778 C T NTSR1 Silent p.L73L 0.16 TCGA-22-5489-01 20 62851172 62851172 C G MYT1 Missense_Mutation p.P693R 0.15 probably_damaging(1) TCGA-22-5489-01 20 7963097 7963097 T A TMX4 Missense_Mutation p.N284I 0.20 deleterious(0.04) benign(0.003) TCGA-22-5489-01 21 22652925 22652925 G C NCAM2 Missense_Mutation p.S28T 0.27 tolerated(0.35) benign(0.236) TCGA-22-5489-01 21 31964914 31964914 C G KRTAP6-3 Silent p.G43G 0.23 TCGA-22-5489-01 21 34165977 34165977 G T C21orf62 3'UTR 0.15 TCGA-22-5489-01 21 40824044 40824044 G T SH3BGR Missense_Mutation p.A71S 0.22 tolerated(0.17) benign(0.16) TCGA-22-5489-01 21 46032517 46032517 T C KRTAP10-8 Missense_Mutation p.V167A 0.19 deleterious(0.03) unknown(0) TCGA-22-5489-01 21 46032668 46032668 C G KRTAP10-8 Missense_Mutation p.C217W 0.19 deleterious(0.01) unknown(0) TCGA-22-5489-01 22 17468980 17468980 G T GAB4 Missense_Mutation p.L186I 0.28 deleterious(0.02) possibly_damaging(0.636) TCGA-22-5489-01 22 17619472 17619472 C A CECR5 Missense_Mutation p.W301C 0.18 deleterious(0) possibly_damaging(0.894) TCGA-22-5489-01 22 18304872 18304872 C A MICAL3 Missense_Mutation p.E1124D 0.17 benign(0.001) TCGA-22-5489-01 22 19865642 19865642 T G TXNRD2 Missense_Mutation p.E472D 0.28 deleterious(0) probably_damaging(0.999) TCGA-22-5489-01 22 22869016 22869016 C A ZNF280A Missense_Mutation p.M313I 0.19 deleterious(0.03) possibly_damaging(0.677) TCGA-22-5489-01 22 26860679 26860679 C A HPS4 Missense_Mutation p.W306L 0.06 tolerated(0.42) benign(0.006) TCGA-22-5489-01 22 28196401 28196401 G C MN1 Missense_Mutation p.P44R 0.10 benign(0.267) TCGA-22-5489-01 22 32625228 32625228 G A SLC5A4 Silent p.T411T 0.26 TCGA-22-5489-01 22 42262852 42262852 A G SREBF2 Missense_Mutation p.S36G 0.18 deleterious(0.03) probably_damaging(0.952) TCGA-22-5489-01 2 113950133 113950133 G T PSD4 Missense_Mutation p.R602L 0.27 deleterious(0.01) benign(0.149) TCGA-22-5489-01 2 121744085 121744085 G A GLI2 Missense_Mutation p.E730K 0.48 deleterious(0) probably_damaging(0.991) TCGA-22-5489-01 2 132237844 132237844 C A TUBA3D Missense_Mutation p.T193K 0.22 deleterious_low_confidence(0) possibly_damaging(0.684) TCGA-22-5489-01 2 135745182 135745182 A T MAP3K19 Silent p.V420V 0.21 TCGA-22-5489-01 2 145157445 145157445 G T ZEB2 Missense_Mutation p.Q437K 0.38 deleterious(0) possibly_damaging(0.7) TCGA-22-5489-01 2 179529454 179529454 A C TTN Silent p.A12043A 0.14 TCGA-22-5489-01 2 179576820 179576820 C T TTN Missense_Mutation p.R9246K 0.32 TCGA-22-5489-01 2 179628932 179628932 G T TTN Silent p.A3362A 0.14 TCGA-22-5489-01 2 179635941 179635941 C A TTN Nonsense_Mutation p.E2705* 0.24 TCGA-22-5489-01 2 196681439 196681439 G T DNAH7 Missense_Mutation p.P3225H 0.29 deleterious(0) probably_damaging(0.998) TCGA-22-5489-01 2 202582799 202582799 C A ALS2 Splice_Site p.X1279_splice 0.14 TCGA-22-5489-01 2 210896248 210896249 - CA KANSL1L Frame_Shift_Ins p.W684Cfs*14 0.18 TCGA-22-5489-01 2 220342649 220342649 C A SPEG Missense_Mutation p.R1617S 0.20 probably_damaging(0.991) TCGA-22-5489-01 2 231951878 231951878 T C PSMD1 Silent p.L622L 0.15 TCGA-22-5489-01 2 234854669 234854669 T A TRPM8 Missense_Mutation p.I290N 0.12 tolerated(0.39) benign(0.1) TCGA-22-5489-01 2 25387637 25387637 G T POMC Missense_Mutation p.P2Q 0.32 deleterious_low_confidence(0.03) possibly_damaging(0.702) TCGA-22-5489-01 2 27823603 27823603 G T ZNF512 Missense_Mutation p.S168I 0.30 deleterious(0.01) probably_damaging(0.991) TCGA-22-5489-01 2 44428810 44428810 A G PPM1B Missense_Mutation p.R158G 0.27 deleterious(0.01) possibly_damaging(0.878) TCGA-22-5489-01 2 48602067 48602067 C T FOXN2 Missense_Mutation p.P261S 0.28 tolerated(0.1) benign(0.424) TCGA-22-5489-01 2 63631438 63631438 C A WDPCP Missense_Mutation p.V394F 0.26 deleterious(0) possibly_damaging(0.892) TCGA-22-5489-01 2 85628714 85628714 C A CAPG Nonsense_Mutation p.E97* 0.05 TCGA-22-5489-01 2 89544262 89544262 G T IGKV2-30 3'Flank 0.26 TCGA-22-5489-01 2 95539830 95539830 G A TEKT4 Silent p.P230P 0.28 TCGA-22-5489-01 2 96949340 96949340 G A SNRNP200 Missense_Mutation p.R1566C 0.08 deleterious(0) probably_damaging(0.987) TCGA-22-5489-01 3 101474392 101474392 C G CEP97 Missense_Mutation p.Q283E 0.21 tolerated(0.38) benign(0.109) TCGA-22-5489-01 3 101535662 101535662 C T NXPE3 Nonsense_Mutation p.Q316* 0.18 TCGA-22-5489-01 3 114070156 114070156 C T ZBTB20 Missense_Mutation p.G257S 0.12 tolerated(0.17) probably_damaging(0.987) TCGA-22-5489-01 3 127541190 127541190 A T MGLL 5'UTR 0.21 TCGA-22-5489-01 3 141678557 141678557 G A TFDP2 Missense_Mutation p.A337V 0.16 tolerated(0.08) possibly_damaging(0.879) TCGA-22-5489-01 3 167223158 167223158 T C WDR49 Missense_Mutation p.R589G 0.07 tolerated(0.41) benign(0.118) TCGA-22-5489-01 3 178916806 178916806 G A PIK3CA Missense_Mutation p.E65K 0.10 tolerated(0.74) possibly_damaging(0.472) TCGA-22-5489-01 3 179576902 179576902 G T PEX5L Missense_Mutation p.S257Y 0.14 deleterious(0) probably_damaging(0.921) TCGA-22-5489-01 3 182988594 182988594 T C B3GNT5 Silent p.A336A 0.51 TCGA-22-5489-01 3 184010029 184010029 C A ECE2 3'UTR 0.15 TCGA-22-5489-01 3 49689524 49689524 G T BSN Silent p.R845R 0.23 TCGA-22-5489-01 3 52521868 52521868 G T NISCH Missense_Mutation p.S787I 0.27 deleterious(0.02) benign(0.147) TCGA-22-5489-01 3 52538511 52538511 C G STAB1 Silent p.G395G 0.17 TCGA-22-5489-01 3 98188464 98188464 C A OR5K1 Missense_Mutation p.T15K 0.11 tolerated(0.07) benign(0.08) TCGA-22-5489-01 4 100065382 100065382 G - ADH4 5'UTR 0.22 TCGA-22-5489-01 4 110865192 110865192 G A EGF Missense_Mutation p.G235E 0.28 deleterious(0) probably_damaging(0.994) TCGA-22-5489-01 4 129867242 129867242 G A SCLT1 Silent p.F453F 0.18 TCGA-22-5489-01 4 159567972 159567987 TTCGTGATCGGAGGCT - RXFP1 Frame_Shift_Del p.F459Lfs*3 0.29 TCGA-22-5489-01 4 173734859 173734859 C A GALNTL6 Missense_Mutation p.P303H 0.20 deleterious(0.02) probably_damaging(0.965) TCGA-22-5489-01 4 175565117 175565117 G A GLRA3 Silent p.H405H 0.33 TCGA-22-5489-01 4 39322122 39322122 C G RFC1 Missense_Mutation p.E326Q 0.31 tolerated(0.15) benign(0.009) TCGA-22-5489-01 4 71201337 71201337 C T CABS1 Missense_Mutation p.S194F 0.22 deleterious(0) benign(0.158) TCGA-22-5489-01 4 7820899 7820899 C T AFAP1 Splice_Site p.X243_splice 0.38 TCGA-22-5489-01 4 80329328 80329328 C A GK2 Silent p.V9V 0.29 TCGA-22-5489-01 4 951970 951970 C G TMEM175 Missense_Mutation p.Q401E 0.35 tolerated(1) benign(0.002) TCGA-22-5489-01 5 128301714 128301714 C T SLC27A6 5'UTR 0.31 TCGA-22-5489-01 5 137257368 137257368 G A PKD2L2 Missense_Mutation p.G458S 0.17 tolerated(0.34) benign(0.055) TCGA-22-5489-01 5 140202400 140202400 C A PCDHA5 Missense_Mutation p.P347Q 0.05 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-22-5489-01 5 140554381 140554381 C T PCDHB7 Silent p.T655T 0.17 TCGA-22-5489-01 5 140572222 140572222 T A PCDHB10 Missense_Mutation p.Y33N 0.28 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-22-5489-01 5 140615830 140615830 C A PCDHB18 RNA 0.06 TCGA-22-5489-01 5 147693698 147693698 G A SPINK7 Silent p.V41V 0.14 TCGA-22-5489-01 5 150072543 150072543 T A RBM22 Missense_Mutation p.Y349F 0.23 tolerated(0.41) benign(0.001) TCGA-22-5489-01 5 160886795 160886795 T C GABRB2 Missense_Mutation p.Y98C 0.25 deleterious(0) probably_damaging(0.996) TCGA-22-5489-01 5 23523422 23523422 A - PRDM9 Frame_Shift_Del p.Y302Lfs*15 0.22 TCGA-22-5489-01 5 31299680 31299680 C A CDH6 Silent p.T251T 0.25 TCGA-22-5489-01 5 41049468 41049468 C A MROH2B Missense_Mutation p.S472I 0.28 deleterious(0.01) benign(0.15) TCGA-22-5489-01 5 43245994 43245994 G - NIM1K Frame_Shift_Del p.G40Dfs*6 0.20 TCGA-22-5489-01 5 45695818 45695818 C A HCN1 Missense_Mutation p.R126S 0.31 deleterious(0) probably_damaging(0.966) TCGA-22-5489-01 5 45695819 45695819 C A HCN1 Missense_Mutation p.R126M 0.31 deleterious(0) probably_damaging(0.99) TCGA-22-5489-01 5 56161203 56161203 C T MAP3K1 Silent p.L358L 0.20 TCGA-22-5489-01 5 76129000 76129000 A G F2RL1 Missense_Mutation p.I190V 0.21 tolerated(0.55) benign(0.008) TCGA-22-5489-01 5 79854374 79854374 T A ANKRD34B Nonsense_Mutation p.K489* 0.18 TCGA-22-5489-01 5 81608539 81608539 G T ATP6AP1L Missense_Mutation p.V81L 0.22 deleterious(0.01) benign(0.063) TCGA-22-5489-01 6 108508817 108508817 C A NR2E1 3'UTR 0.46 TCGA-22-5489-01 6 125404080 125404080 G T RNF217 3'UTR 0.57 TCGA-22-5489-01 6 130460904 130460904 G T L3MBTL3 3'UTR 0.48 TCGA-22-5489-01 6 26250687 26250687 G A HIST1H3F Silent p.L49L 0.12 TCGA-22-5489-01 6 29430068 29430068 C G OR2H1 Missense_Mutation p.D174E 0.42 deleterious(0.02) possibly_damaging(0.644) TCGA-22-5489-01 6 34985396 34985396 G C ANKS1A Missense_Mutation p.G524R 0.44 tolerated(0.14) benign(0.004) TCGA-22-5489-01 6 34985397 34985397 G T ANKS1A Missense_Mutation p.G524V 0.48 deleterious(0.03) benign(0.042) TCGA-22-5489-01 6 66204709 66204709 T C EYS Missense_Mutation p.S199G 0.30 tolerated(0.24) benign(0.058) TCGA-22-5489-01 6 76657184 76657184 C A IMPG1 Missense_Mutation p.G631W 0.07 deleterious(0) probably_damaging(1) TCGA-22-5489-01 6 76744486 76744486 C A IMPG1 Missense_Mutation p.W107L 0.29 deleterious(0) probably_damaging(0.999) TCGA-22-5489-01 6 86194989 86194989 A T NT5E Missense_Mutation p.Y263F 0.17 deleterious(0.02) probably_damaging(1) TCGA-22-5489-01 7 100551257 100551257 C A MUC3A Missense_Mutation p.S3Y 0.17 deleterious_low_confidence(0) unknown(0) TCGA-22-5489-01 7 100861414 100861414 C G ZNHIT1 5'UTR 0.14 TCGA-22-5489-01 7 107434225 107434225 A G SLC26A3 Missense_Mutation p.V78A 0.28 deleterious(0) probably_damaging(0.927) TCGA-22-5489-01 7 120876765 120876765 C A CPED1 Intron 0.16 TCGA-22-5489-01 7 122047603 122047603 G A CADPS2 Nonsense_Mutation p.R913* 0.14 TCGA-22-5489-01 7 133812382 133812382 G C LRGUK Missense_Mutation p.E88Q 0.23 tolerated_low_confidence(0.09) possibly_damaging(0.812) TCGA-22-5489-01 7 149467540 149467540 C A ZNF467 Missense_Mutation p.G47V 0.23 deleterious(0.01) benign(0.411) TCGA-22-5489-01 7 20198665 20198665 C A MACC1 Missense_Mutation p.C440F 0.12 tolerated(0.07) possibly_damaging(0.736) TCGA-22-5489-01 7 44880514 44880514 T C H2AFV Missense_Mutation p.E60G 0.16 deleterious(0) probably_damaging(0.975) TCGA-22-5489-01 7 48086089 48086089 T A C7orf57 Missense_Mutation p.V128D 0.36 deleterious(0) probably_damaging(0.986) TCGA-22-5489-01 7 90042534 90042534 G T CLDN12 Missense_Mutation p.A182S 0.25 tolerated(0.38) benign(0.003) TCGA-22-5489-01 7 97361961 97361961 G C TAC1 Missense_Mutation p.V13L 0.14 tolerated(0.08) benign(0.004) TCGA-22-5489-01 8 139207519 139207519 C A FAM135B Missense_Mutation p.Q285H 0.42 deleterious(0.01) possibly_damaging(0.764) TCGA-22-5489-01 8 21844713 21844713 G A XPO7 Missense_Mutation p.E547K 0.50 deleterious(0) possibly_damaging(0.687) TCGA-22-5489-01 8 42044968 42044968 C T PLAT Missense_Mutation p.G163R 0.12 deleterious(0) probably_damaging(0.969) TCGA-22-5489-01 8 57026417 57026417 C A MOS Missense_Mutation p.R42L 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-22-5489-01 8 57354094 57354094 C T PENK Missense_Mutation p.E181K 0.47 deleterious(0.05) benign(0.24) TCGA-22-5489-01 8 67547539 67547539 C G VCPIP1 Missense_Mutation p.E956Q 0.55 deleterious(0.02) possibly_damaging(0.818) TCGA-22-5489-01 8 74203803 74203803 C G RPL7 Missense_Mutation p.L174F 0.47 deleterious(0.02) benign(0.172) TCGA-22-5489-01 8 77767532 77767532 G T ZFHX4 Missense_Mutation p.G2792V 0.43 probably_damaging(0.951) TCGA-22-5489-01 8 87076589 87076589 C A PSKH2 Nonsense_Mutation p.G153* 0.05 TCGA-22-5489-01 8 95850755 95850755 G A INTS8 Missense_Mutation p.C309Y 0.05 deleterious(0) probably_damaging(0.999) TCGA-22-5489-01 9 103947746 103947746 G A LPPR1 5'UTR 0.48 TCGA-22-5489-01 9 111945036 111945036 A G EPB41L4B Silent p.D820D 0.39 TCGA-22-5489-01 9 13110740 13110740 C A MPDZ Splice_Site p.X1880_splice 0.21 TCGA-22-5489-01 9 131670130 131670130 G T LRRC8A Silent p.T229T 0.38 TCGA-22-5489-01 9 14640001 14640006 CAAAGA AAAGG ZDHHC21 Frame_Shift_Del p.L170Pfs*10 0.16 TCGA-22-5489-01 9 15777713 15777713 G C CCDC171 Missense_Mutation p.R929S 0.10 tolerated(0.1) benign(0.246) TCGA-22-5489-01 9 15777729 15777729 G T CCDC171 Nonsense_Mutation p.E935* 0.11 TCGA-22-5489-01 9 16419556 16419556 C A BNC2 Missense_Mutation p.D911Y 0.13 deleterious(0) probably_damaging(0.936) TCGA-22-5489-01 9 32633549 32633549 C G TAF1L Missense_Mutation p.G677R 0.48 deleterious(0) probably_damaging(0.973) TCGA-22-5489-01 9 34659843 34659843 G C IL11RA Missense_Mutation p.D300H 0.09 deleterious(0) probably_damaging(1) TCGA-22-5489-01 9 69423744 69423744 G T ANKRD20A4 Missense_Mutation p.K680N 0.47 deleterious(0.02) probably_damaging(0.918) TCGA-22-5489-01 9 90534218 90534218 C T SPATA31C1 RNA 0.36 TCGA-22-5489-01 X 110653548 110653548 G T DCX Missense_Mutation p.P108T 0.42 deleterious(0.02) possibly_damaging(0.465) TCGA-22-5489-01 X 111155954 111155954 G T TRPC5 Nonsense_Mutation p.Y155* 0.35 TCGA-22-5489-01 X 12905134 12905134 A T TLR7 Missense_Mutation p.N503Y 0.34 deleterious(0) probably_damaging(1) TCGA-22-5489-01 X 150844595 150844595 G T PASD1 Missense_Mutation p.D768Y 0.42 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-22-5489-01 X 34148709 34148709 C T FAM47A Missense_Mutation p.A563T 0.09 tolerated(0.58) benign(0.019) TCGA-22-5489-01 X 78011260 78011260 C A LPAR4 Nonsense_Mutation p.C298* 0.39 TCGA-22-5489-01 X 99662244 99662244 G T PCDH19 Missense_Mutation p.P451Q 0.42 deleterious(0) probably_damaging(1) TCGA-22-5491-01 10 103344610 103344610 G A POLL Missense_Mutation p.L214F 0.50 tolerated(0.06) benign(0.076) TCGA-22-5491-01 10 103919289 103919289 G C NOLC1 Missense_Mutation p.E275Q 0.37 tolerated_low_confidence(0.07) benign(0.403) TCGA-22-5491-01 10 107022168 107022168 G A SORCS3 Missense_Mutation p.E1175K 0.23 deleterious(0.03) benign(0.099) TCGA-22-5491-01 10 112344088 112344088 T C SMC3 Silent p.I413I 0.05 TCGA-22-5491-01 10 135106044 135106044 C G TUBGCP2 Silent p.L419L 0.18 TCGA-22-5491-01 10 26508134 26508134 C A GAD2 Missense_Mutation p.A150E 0.29 tolerated(0.84) benign(0.216) TCGA-22-5491-01 10 46999535 46999535 G A GPRIN2 Missense_Mutation p.E219K 0.09 tolerated(0.08) benign(0.002) TCGA-22-5491-01 10 64967446 64967446 C T JMJD1C Missense_Mutation p.R1328H 0.26 tolerated_low_confidence(0.09) possibly_damaging(0.84) TCGA-22-5491-01 10 70426800 70426800 A C TET1 Splice_Site p.X1488_splice 0.39 TCGA-22-5491-01 10 71168822 71168822 G A TACR2 Silent p.L199L 0.16 TCGA-22-5491-01 10 78844400 78844400 G C KCNMA1 Missense_Mutation p.I506M 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-22-5491-01 11 103908395 103908395 T G DDI1 Missense_Mutation p.V282G 0.46 deleterious(0) probably_damaging(0.999) TCGA-22-5491-01 11 108043724 108043724 A - NPAT Frame_Shift_Del p.S663Hfs*4 0.30 TCGA-22-5491-01 11 118352801 118352801 G T KMT2A Nonsense_Mutation p.E1336* 0.41 TCGA-22-5491-01 11 1213233 1213233 A G MUC5AC RNA 0.21 TCGA-22-5491-01 11 128840352 128840352 C T ARHGAP32 Missense_Mutation p.E1572K 0.18 deleterious(0.01) probably_damaging(0.991) TCGA-22-5491-01 11 26353798 26353798 G A ANO3 5'UTR 0.36 TCGA-22-5491-01 11 34180853 34180853 T C ABTB2 Missense_Mutation p.H896R 0.17 tolerated(0.16) benign(0.079) TCGA-22-5491-01 11 34226167 34226167 A C ABTB2 Missense_Mutation p.D318E 0.46 tolerated(0.24) benign(0.11) TCGA-22-5491-01 11 36680752 36680753 TG - C11orf74 3'UTR 0.24 TCGA-22-5491-01 11 40136744 40136744 C T LRRC4C Missense_Mutation p.E367K 0.16 deleterious(0.02) probably_damaging(0.929) TCGA-22-5491-01 11 5080688 5080688 A G OR52E2 Missense_Mutation p.L57P 0.33 deleterious(0) probably_damaging(0.998) TCGA-22-5491-01 11 55944867 55944867 C A OR5J2 Missense_Mutation p.S258R 0.13 deleterious(0.04) possibly_damaging(0.601) TCGA-22-5491-01 11 60785236 60785236 G C CD6 Missense_Mutation p.E530Q 0.14 tolerated(0.06) possibly_damaging(0.642) TCGA-22-5491-01 11 61135572 61135572 G A TMEM138 Intron 0.44 TCGA-22-5491-01 11 6265537 6265537 C T CNGA4 Silent p.P542P 0.28 TCGA-22-5491-01 11 63129968 63129968 C A SLC22A10 3'UTR 0.23 TCGA-22-5491-01 11 63978285 63978285 C G FERMT3 Missense_Mutation p.F121L 0.21 deleterious(0.03) possibly_damaging(0.464) TCGA-22-5491-01 11 64851098 64851098 C T CDCA5 Intron 0.48 TCGA-22-5491-01 11 65360824 65360824 C T KCNK7 Intron 0.36 TCGA-22-5491-01 11 7689735 7689735 T A CYB5R2 Missense_Mutation p.H149L 0.38 tolerated(0.07) possibly_damaging(0.478) TCGA-22-5491-01 11 7689738 7689738 T A CYB5R2 Missense_Mutation p.D148V 0.37 deleterious(0) benign(0.013) TCGA-22-5491-01 11 82959065 82959065 G A ANKRD42 3'UTR 0.16 TCGA-22-5491-01 12 100813710 100813710 C G SLC17A8 Missense_Mutation p.L515V 0.15 tolerated(0.85) benign(0.314) TCGA-22-5491-01 12 110783838 110783838 C G ATP2A2 Missense_Mutation p.P925R 0.38 deleterious(0) probably_damaging(0.995) TCGA-22-5491-01 12 11174550 11174550 C A TAS2R19 Missense_Mutation p.K207N 0.04 deleterious(0.01) benign(0.429) TCGA-22-5491-01 12 132537712 132537712 G A EP400 Silent p.P2472P 0.08 TCGA-22-5491-01 12 133256810 133256810 T A POLE Splice_Site p.X96_splice 0.39 TCGA-22-5491-01 12 22061137 22061137 C A ABCC9 Missense_Mutation p.M443I 0.36 deleterious(0.04) benign(0.01) TCGA-22-5491-01 12 23699316 23699316 T A SOX5 Nonsense_Mutation p.K511* 0.42 TCGA-22-5491-01 12 32135892 32135892 G T KIAA1551 Missense_Mutation p.C668F 0.45 tolerated(0.69) benign(0.013) TCGA-22-5491-01 12 40657693 40657693 C A LRRK2 Missense_Mutation p.A549D 0.32 deleterious(0) benign(0.367) TCGA-22-5491-01 12 42853583 42853583 T A PRICKLE1 3'UTR 0.05 TCGA-22-5491-01 12 48183101 48183101 G A HDAC7 Silent p.I726I 0.16 TCGA-22-5491-01 12 48723172 48723172 G A H1FNT Missense_Mutation p.R33Q 0.15 tolerated(1) benign(0.005) TCGA-22-5491-01 12 4920213 4920213 A C KCNA6 Missense_Mutation p.M336L 0.27 deleterious(0.01) probably_damaging(0.941) TCGA-22-5491-01 12 54767862 54767862 C G ZNF385A Missense_Mutation p.E106Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-22-5491-01 12 55714515 55714515 C A OR6C1 Silent p.I44I 0.40 TCGA-22-5491-01 12 58090100 58090101 TA - OS9 Frame_Shift_Del p.Y175Wfs*9 0.30 TCGA-22-5491-01 12 69085841 69085841 G C NUP107 Missense_Mutation p.D133H 0.16 deleterious(0) possibly_damaging(0.77) TCGA-22-5491-01 12 72036236 72036236 T A ZFC3H1 Missense_Mutation p.D536V 0.16 deleterious(0) probably_damaging(0.929) TCGA-22-5491-01 12 72036237 72036237 C A ZFC3H1 Missense_Mutation p.D536Y 0.16 deleterious(0) probably_damaging(0.963) TCGA-22-5491-01 12 72149021 72149021 C T RAB21 Missense_Mutation p.R38C 0.38 deleterious(0) probably_damaging(1) TCGA-22-5491-01 12 72338186 72338186 T C TPH2 Missense_Mutation p.I123T 0.37 tolerated(0.17) possibly_damaging(0.465) TCGA-22-5491-01 12 79685839 79685839 G C SYT1 Missense_Mutation p.E135Q 0.19 tolerated(0.13) benign(0.239) TCGA-22-5491-01 12 85546834 85546834 A T LRRIQ1 Silent p.S1484S 0.37 TCGA-22-5491-01 12 88588962 88588962 G C TMTC3 Missense_Mutation p.E761Q 0.24 tolerated(0.4) benign(0.036) TCGA-22-5491-01 12 9724122 9724122 A G RP11-726G1.1 RNA 0.74 TCGA-22-5491-01 13 109445971 109445971 G A MYO16 Missense_Mutation p.D220N 0.16 tolerated(0.05) benign(0.127) TCGA-22-5491-01 13 114321992 114321992 G - GRK1 Frame_Shift_Del p.A98Qfs*33 0.46 TCGA-22-5491-01 13 99948238 99948238 G A GPR183 Silent p.V54V 0.26 TCGA-22-5491-01 14 102483504 102483504 G T DYNC1H1 Missense_Mutation p.R2643L 0.14 possibly_damaging(0.887) TCGA-22-5491-01 14 105405346 105405346 C T AHNAK2 Missense_Mutation p.S5481N 0.10 possibly_damaging(0.877) TCGA-22-5491-01 14 107283028 107283028 C A IGHV7-81 Missense_Mutation p.V39F 0.33 deleterious(0) probably_damaging(0.938) TCGA-22-5491-01 14 21955802 21955802 C T TOX4 Missense_Mutation p.H90Y 0.17 tolerated(0.52) benign(0.057) TCGA-22-5491-01 14 23746292 23746292 C T HOMEZ Missense_Mutation p.E49K 0.20 deleterious(0.02) probably_damaging(0.989) TCGA-22-5491-01 14 24885022 24885022 C A NYNRIN Missense_Mutation p.A1356E 0.09 deleterious_low_confidence(0.04) probably_damaging(0.998) TCGA-22-5491-01 14 52781483 52781483 G A PTGER2 Missense_Mutation p.E73K 0.08 tolerated(0.84) possibly_damaging(0.617) TCGA-22-5491-01 14 54989297 54989297 C G CGRRF1 Nonsense_Mutation p.S77* 0.29 TCGA-22-5491-01 14 64727439 64727439 C A ESR2 Missense_Mutation p.R227L 0.22 deleterious(0.02) benign(0.006) TCGA-22-5491-01 14 90650863 90650863 A G KCNK13 Missense_Mutation p.N248S 0.13 tolerated(0.49) benign(0.014) TCGA-22-5491-01 14 90650864 90650864 C T KCNK13 Silent p.N248N 0.13 TCGA-22-5491-01 14 92413584 92413584 C G FBLN5 5'UTR 0.11 TCGA-22-5491-01 15 24921369 24921369 C A NPAP1 Missense_Mutation p.P119T 0.40 tolerated(0.1) probably_damaging(0.949) TCGA-22-5491-01 15 25479407 25479407 G C SNORD115-35 RNA 0.03 TCGA-22-5491-01 15 26806098 26806098 G C GABRB3 Nonsense_Mutation p.S354* 0.06 TCGA-22-5491-01 15 27185157 27185157 G A GABRA5 Missense_Mutation p.M270I 0.37 deleterious(0) benign(0.438) TCGA-22-5491-01 15 33922206 33922206 G C RYR3 Missense_Mutation p.E915D 0.17 probably_damaging(0.999) TCGA-22-5491-01 15 43822282 43822282 A T MAP1A Missense_Mutation p.T2758S 0.35 probably_damaging(0.996) TCGA-22-5491-01 15 43940214 43940214 C T CATSPER2 Missense_Mutation p.D16N 0.18 deleterious(0) probably_damaging(0.928) TCGA-22-5491-01 15 44066423 44066427 CCCAG - ELL3 Frame_Shift_Del p.L331Sfs*4 0.42 TCGA-22-5491-01 15 44143381 44143382 CT - WDR76 Frame_Shift_Del p.L377Vfs*5 0.13 TCGA-22-5491-01 15 59506474 59506474 C T MYO1E Missense_Mutation p.E410K 0.21 deleterious(0.02) benign(0.21) TCGA-22-5491-01 15 64701915 64701915 G A TRIP4 Missense_Mutation p.E311K 0.17 tolerated(0.13) benign(0.035) TCGA-22-5491-01 15 85643423 85643423 C A PDE8A Missense_Mutation p.H344N 0.39 tolerated(0.38) benign(0.001) TCGA-22-5491-01 16 11004059 11004059 C G CIITA Missense_Mutation p.S944W 0.23 deleterious(0.02) possibly_damaging(0.899) TCGA-22-5491-01 16 31072343 31072343 G A ZNF668 3'UTR 0.26 TCGA-22-5491-01 16 31494562 31494562 G A SLC5A2 Silent p.L35L 0.35 TCGA-22-5491-01 16 3458795 3458795 C T ZNF174 Missense_Mutation p.S367L 0.12 deleterious(0) probably_damaging(0.991) TCGA-22-5491-01 16 46998598 46998598 G A DNAJA2 Silent p.F233F 0.21 TCGA-22-5491-01 16 4924782 4924782 C T UBN1 Missense_Mutation p.H791Y 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.542) TCGA-22-5491-01 16 67199689 67199689 G A HSF4 Silent p.E100E 0.79 TCGA-22-5491-01 16 72821373 72821373 G C ZFHX3 Missense_Mutation p.S3601W 0.21 unknown(0) TCGA-22-5491-01 16 88747995 88747995 G A SNAI3 Silent p.I68I 0.18 TCGA-22-5491-01 17 10432354 10432354 C - MYH2 Frame_Shift_Del p.A1133Pfs*37 0.41 TCGA-22-5491-01 17 12666802 12666802 C A MYOCD Silent p.P934P 0.35 TCGA-22-5491-01 17 1543260 1543260 G A SCARF1 Missense_Mutation p.S362F 0.23 deleterious(0.02) benign(0.304) TCGA-22-5491-01 17 18647967 18647967 C T FBXW10 Missense_Mutation p.T137I 0.64 tolerated(0.06) benign(0.266) TCGA-22-5491-01 17 27041699 27041699 G C RAB34 Missense_Mutation p.L305V 0.39 tolerated(0.31) benign(0.03) TCGA-22-5491-01 17 27963527 27963527 T C SSH2 Missense_Mutation p.N547S 0.38 deleterious_low_confidence(0) possibly_damaging(0.881) TCGA-22-5491-01 17 29119460 29119460 G C CRLF3 Missense_Mutation p.F319L 0.18 deleterious(0) benign(0.266) TCGA-22-5491-01 17 32906212 32906212 G A C17orf102 Nonsense_Mutation p.Q30* 0.26 TCGA-22-5491-01 17 3324272 3324272 G T OR3A3 Missense_Mutation p.Q137H 0.13 tolerated(1) benign(0.001) TCGA-22-5491-01 17 36940500 36940500 T A PIP4K2B Missense_Mutation p.Y117F 0.27 tolerated(0.28) benign(0.047) TCGA-22-5491-01 17 4084552 4084552 C A ANKFY1 Missense_Mutation p.R788L 0.69 deleterious(0) probably_damaging(0.985) TCGA-22-5491-01 17 43045094 43045094 G T C1QL1 Missense_Mutation p.P108Q 0.30 tolerated(0.07) benign(0.002) TCGA-22-5491-01 17 45473328 45473328 C A EFCAB13 Missense_Mutation p.L644I 0.34 tolerated(0.1) benign(0.377) TCGA-22-5491-01 17 48266307 48266307 C T COL1A1 Missense_Mutation p.G1001D 0.19 unknown(0) TCGA-22-5491-01 17 5009402 5009402 C G ZNF232 Missense_Mutation p.R351T 0.41 deleterious(0) benign(0.057) TCGA-22-5491-01 17 54428207 54428207 C A ANKFN1 Missense_Mutation p.P93H 0.40 deleterious(0) probably_damaging(0.997) TCGA-22-5491-01 17 58030315 58030315 G T RNFT1 3'UTR 0.22 TCGA-22-5491-01 17 61661022 61661022 G C DCAF7 Intron 0.24 TCGA-22-5491-01 17 62018997 62018997 C T SCN4A Missense_Mutation p.G1549R 0.10 tolerated(0.11) benign(0.146) TCGA-22-5491-01 17 66040122 66040122 C T KPNA2 Nonsense_Mutation p.Q367* 0.22 TCGA-22-5491-01 17 7232368 7232368 G A NEURL4 Silent p.T88T 0.68 TCGA-22-5491-01 17 73486809 73486809 C T KIAA0195 Silent p.L366L 0.12 TCGA-22-5491-01 17 73702548 73702548 A G SAP30BP Missense_Mutation p.K292E 0.28 deleterious(0) probably_damaging(0.993) TCGA-22-5491-01 17 74476009 74476009 C T RHBDF2 Silent p.R55R 0.31 TCGA-22-5491-01 17 7578478 7578478 G C TP53 Missense_Mutation p.P151R 0.67 deleterious(0) probably_damaging(0.997) TCGA-22-5491-01 17 80012801 80012801 C A GPS1 Missense_Mutation p.H253N 0.07 deleterious(0.02) possibly_damaging(0.477) TCGA-22-5491-01 17 80724167 80724167 C A TBCD Missense_Mutation p.R120S 0.23 deleterious(0.03) benign(0.007) TCGA-22-5491-01 18 29027811 29027811 T G DSG3 5'UTR 0.33 TCGA-22-5491-01 18 30092671 30092671 G A WBP11P1 RNA 0.33 TCGA-22-5491-01 18 43456279 43456279 C A EPG5 Nonsense_Mutation p.E1991* 0.43 TCGA-22-5491-01 18 46284376 46284376 A G CTIF Missense_Mutation p.Q224R 0.48 tolerated_low_confidence(0.15) benign(0.142) TCGA-22-5491-01 18 59899640 59899640 G C KIAA1468 Missense_Mutation p.V534L 0.26 deleterious(0) probably_damaging(0.992) TCGA-22-5491-01 18 77659303 77659303 C G KCNG2 Silent p.L296L 0.25 TCGA-22-5491-01 19 11474413 11474413 C T DKFZP761J1410 Nonsense_Mutation p.Q264* 0.22 TCGA-22-5491-01 19 12575430 12575430 G C ZNF709 Missense_Mutation p.R436G 0.06 deleterious(0.01) possibly_damaging(0.794) TCGA-22-5491-01 19 12577613 12577613 C T ZNF709 Missense_Mutation p.A19T 0.06 tolerated(0.13) possibly_damaging(0.475) TCGA-22-5491-01 19 15349587 15349587 C A BRD4 Silent p.R1329R 0.13 TCGA-22-5491-01 19 19120951 19120951 C G SUGP2 Missense_Mutation p.R684P 0.34 tolerated(0.09) possibly_damaging(0.604) TCGA-22-5491-01 19 2114168 2114168 C G AP3D1 Missense_Mutation p.E853Q 0.29 tolerated(0.08) benign(0.242) TCGA-22-5491-01 19 21541838 21541838 C T ZNF738 5'UTR 0.17 TCGA-22-5491-01 19 21910548 21910548 A T ZNF100 Missense_Mutation p.F189Y 0.12 tolerated(0.11) benign(0.017) TCGA-22-5491-01 19 22156018 22156018 C T ZNF208 Silent p.E606E 0.20 TCGA-22-5491-01 19 22157258 22157258 C G ZNF208 Missense_Mutation p.R193T 0.39 tolerated(0.12) benign(0.086) TCGA-22-5491-01 19 22375890 22375890 G T ZNF676 Missense_Mutation p.L20M 0.32 deleterious(0.02) possibly_damaging(0.638) TCGA-22-5491-01 19 22783086 22783086 C G AC011467.1 5'Flank 0.31 TCGA-22-5491-01 19 34833290 34833290 C A KIAA0355 Silent p.T817T 0.34 TCGA-22-5491-01 19 37677991 37677991 T G ZNF585B Missense_Mutation p.K150Q 0.40 tolerated(0.05) benign(0.027) TCGA-22-5491-01 19 38055520 38055520 G A ZNF571 Missense_Mutation p.H604Y 0.40 deleterious(0) possibly_damaging(0.75) TCGA-22-5491-01 19 38056780 38056780 G A ZNF571 Nonsense_Mutation p.Q184* 0.19 TCGA-22-5491-01 19 3831804 3831804 G T ZFR2 Missense_Mutation p.P151H 0.17 deleterious(0.02) benign(0.399) TCGA-22-5491-01 19 38573263 38573263 A G SIPA1L3 Missense_Mutation p.N353S 0.44 tolerated(0.17) benign(0.136) TCGA-22-5491-01 19 38956903 38956903 C A RYR1 Missense_Mutation p.R1015S 0.29 possibly_damaging(0.804) TCGA-22-5491-01 19 43979526 43979526 C T PHLDB3 3'UTR 0.36 TCGA-22-5491-01 19 45375120 45375120 G A PVRL2 Silent p.K163K 0.30 TCGA-22-5491-01 19 45868093 45868093 C T ERCC2 Intron 0.20 TCGA-22-5491-01 19 46915713 46915713 G A CCDC8 Nonsense_Mutation p.Q119* 0.37 TCGA-22-5491-01 19 48945182 48945182 C T GRIN2D Silent p.I803I 0.05 TCGA-22-5491-01 19 52220298 52220298 C G HAS1 Missense_Mutation p.R284P 0.26 deleterious(0) probably_damaging(0.945) TCGA-22-5491-01 19 53270592 53270592 A T ZNF600 Nonsense_Mutation p.Y139* 0.37 TCGA-22-5491-01 19 54310894 54310894 C T NLRP12 Missense_Mutation p.A700T 0.15 tolerated(0.19) benign(0.021) TCGA-22-5491-01 19 54667405 54667405 C T TMC4 Intron 0.14 TCGA-22-5491-01 19 55607648 55607648 G T PPP1R12C Missense_Mutation p.S336Y 0.29 tolerated(1) possibly_damaging(0.801) TCGA-22-5491-01 19 5664121 5664121 G A SAFB Missense_Mutation p.D748N 0.05 deleterious(0.04) unknown(0) TCGA-22-5491-01 19 58265931 58265931 A C ZNF776 Missense_Mutation p.H478P 0.46 deleterious(0) probably_damaging(1) TCGA-22-5491-01 19 58438048 58438048 G C ZNF418 Missense_Mutation p.Q501E 0.18 deleterious(0.03) benign(0.076) TCGA-22-5491-01 19 58490952 58490952 C A ZNF606 Missense_Mutation p.G366C 0.35 deleterious(0.02) possibly_damaging(0.654) TCGA-22-5491-01 19 58773197 58773197 G T ZNF544 Nonsense_Mutation p.E409* 0.13 TCGA-22-5491-01 19 6904052 6904052 G C EMR1 Missense_Mutation p.D270H 0.35 deleterious(0) probably_damaging(0.991) TCGA-22-5491-01 19 7620527 7620527 G C PNPLA6 Missense_Mutation p.E1001Q 0.12 tolerated(0.59) benign(0.015) TCGA-22-5491-01 19 9003290 9003290 C A MUC16 Intron 0.13 TCGA-22-5491-01 19 9583891 9583891 C G ZNF560 Missense_Mutation p.E68Q 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.727) TCGA-22-5491-01 19 9586019 9586019 G C ZNF560 5'UTR 0.31 TCGA-22-5491-01 1 103364270 103364270 A C COL11A1 Silent p.P1400P 0.32 TCGA-22-5491-01 1 103379198 103379198 G T COL11A1 Missense_Mutation p.Q1343K 0.41 unknown(0) TCGA-22-5491-01 1 112524921 112524921 T C KCND3 Missense_Mutation p.N143S 0.43 tolerated(0.06) benign(0) TCGA-22-5491-01 1 120296009 120296009 G T HMGCS2 Missense_Mutation p.H396Q 0.33 tolerated(0.95) benign(0.002) TCGA-22-5491-01 1 1226035 1226035 C G SCNN1D Silent p.L626L 0.32 TCGA-22-5491-01 1 144886274 144886274 G C PDE4DIP Missense_Mutation p.S987C 0.08 tolerated(0.26) benign(0.012) TCGA-22-5491-01 1 149904192 149904192 G A MTMR11 Missense_Mutation p.S339L 0.19 deleterious(0) possibly_damaging(0.583) TCGA-22-5491-01 1 151787699 151787699 A T RORC Silent p.P167P 0.05 TCGA-22-5491-01 1 152285056 152285056 C T FLG Missense_Mutation p.G769D 0.42 probably_damaging(0.993) TCGA-22-5491-01 1 152323772 152323772 G C FLG2 Missense_Mutation p.Q2164E 0.40 benign(0.087) TCGA-22-5491-01 1 153935025 153935025 C T SLC39A1 Missense_Mutation p.G56E 0.28 deleterious(0.05) benign(0.345) TCGA-22-5491-01 1 155730294 155730294 G A GON4L Nonsense_Mutation p.Q1684* 0.18 TCGA-22-5491-01 1 158301220 158301220 G T CD1B 5'UTR 0.37 TCGA-22-5491-01 1 159175317 159175317 T C DARC Missense_Mutation p.Y32H 0.26 tolerated(0.08) possibly_damaging(0.858) TCGA-22-5491-01 1 160109762 160109762 C T ATP1A2 Missense_Mutation p.R1008W 0.39 deleterious(0.01) possibly_damaging(0.82) TCGA-22-5491-01 1 168260473 168260473 T C TBX19 Silent p.F93F 0.41 TCGA-22-5491-01 1 175097272 175097272 C A TNN Missense_Mutation p.S1050R 0.30 deleterious(0) probably_damaging(1) TCGA-22-5491-01 1 203026006 203026006 A G PPFIA4 Missense_Mutation p.I273V 0.32 deleterious(0.01) possibly_damaging(0.502) TCGA-22-5491-01 1 204379802 204379802 C A PPP1R15B Missense_Mutation p.E246D 0.12 tolerated(0.09) benign(0.014) TCGA-22-5491-01 1 20517982 20517982 A T UBXN10 3'UTR 0.60 TCGA-22-5491-01 1 212538573 212538573 G A TMEM206 Missense_Mutation p.T407M 0.05 tolerated_low_confidence(0.13) benign(0.07) TCGA-22-5491-01 1 214567092 214567092 G T PTPN14 Missense_Mutation p.S292Y 0.23 tolerated(0.14) probably_damaging(0.942) TCGA-22-5491-01 1 227239654 227239654 G A CDC42BPA Intron 0.29 TCGA-22-5491-01 1 228559483 228559483 C T OBSCN Nonsense_Mutation p.Q7959* 0.21 TCGA-22-5491-01 1 231664425 231664425 C G TSNAX 5'UTR 1.00 TCGA-22-5491-01 1 232942054 232942054 G C MAP10 Missense_Mutation p.E429Q 0.05 tolerated(1) benign(0.006) TCGA-22-5491-01 1 237732556 237732556 G T RYR2 Missense_Mutation p.G1179C 0.29 probably_damaging(1) TCGA-22-5491-01 1 237732557 237732557 G T RYR2 Missense_Mutation p.G1179V 0.29 probably_damaging(1) TCGA-22-5491-01 1 237935345 237935345 A G RYR2 Missense_Mutation p.N3864S 0.25 benign(0.401) TCGA-22-5491-01 1 240637518 240637518 G T FMN2 3'UTR 0.30 TCGA-22-5491-01 1 242042219 242042219 T C EXO1 Silent p.D561D 0.45 TCGA-22-5491-01 1 247752529 247752529 C G OR2G2 Missense_Mutation p.P290A 0.28 deleterious(0) probably_damaging(0.999) TCGA-22-5491-01 1 26371487 26371487 C G SLC30A2 Splice_Site p.X91_splice 0.72 TCGA-22-5491-01 1 26611997 26611997 G C UBXN11 Silent p.P270P 0.27 TCGA-22-5491-01 1 32688037 32688037 G A EIF3I 5'UTR 0.10 TCGA-22-5491-01 1 40723960 40723960 C T ZMPSTE24 Missense_Mutation p.S6L 0.23 tolerated_low_confidence(0.13) benign(0.001) TCGA-22-5491-01 1 44070639 44070639 C G PTPRF Missense_Mutation p.P1035A 0.13 deleterious(0) probably_damaging(0.952) TCGA-22-5491-01 1 45671861 45671861 G T ZSWIM5 Silent p.L54L 0.30 TCGA-22-5491-01 1 52266334 52266334 C T NRD1 Missense_Mutation p.D847N 0.32 tolerated(0.15) benign(0.084) TCGA-22-5491-01 1 65339169 65339169 C A JAK1 Nonsense_Mutation p.E123* 0.32 TCGA-22-5491-01 1 68171223 68171223 C A GNG12 Nonsense_Mutation p.E44* 0.34 TCGA-22-5491-01 20 11903866 11903866 G A BTBD3 Missense_Mutation p.R374H 0.09 deleterious(0.03) possibly_damaging(0.587) TCGA-22-5491-01 20 30436696 30436696 C T FOXS1 5'Flank 0.34 TCGA-22-5491-01 20 30720816 30720816 G A TM9SF4 Missense_Mutation p.D6N 0.13 tolerated_low_confidence(0.48) benign(0.009) TCGA-22-5491-01 20 30804866 30804866 C T POFUT1 Intron 0.05 TCGA-22-5491-01 20 34761748 34761748 G A EPB41L1 Missense_Mutation p.E17K 0.12 tolerated(0.22) benign(0.034) TCGA-22-5491-01 20 36662301 36662301 C G RPRD1B 5'UTR 0.10 TCGA-22-5491-01 20 4163303 4163303 G C SMOX Missense_Mutation p.E393Q 0.14 tolerated(0.35) benign(0.057) TCGA-22-5491-01 20 45839287 45839287 G A ZMYND8 3'Flank 0.13 TCGA-22-5491-01 20 53205259 53205259 A C DOK5 Missense_Mutation p.Q108P 0.39 tolerated(0.21) benign(0.005) TCGA-22-5491-01 22 22324733 22324733 C T TOP3B Missense_Mutation p.E144K 0.21 tolerated(0.54) benign(0.015) TCGA-22-5491-01 22 25145673 25145673 C G PIWIL3 Silent p.L401L 0.37 TCGA-22-5491-01 22 29445639 29445639 C T ZNRF3 Silent p.L490L 0.20 TCGA-22-5491-01 22 29446217 29446217 C T ZNRF3 Missense_Mutation p.S683L 0.14 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-22-5491-01 22 29490392 29490392 G A KREMEN1 Missense_Mutation p.E82K 0.39 tolerated(0.17) benign(0.041) TCGA-22-5491-01 22 31345808 31345808 G A MORC2 Nonsense_Mutation p.Q21* 0.26 TCGA-22-5491-01 22 37578732 37578732 C A C1QTNF6 Missense_Mutation p.M111I 0.13 tolerated(0.39) benign(0.033) TCGA-22-5491-01 22 38323472 38323472 C T MICALL1 Missense_Mutation p.P507L 0.22 deleterious(0) probably_damaging(0.999) TCGA-22-5491-01 22 50170800 50170800 C A BRD1 Silent p.A870A 0.31 TCGA-22-5491-01 2 100628012 100628012 C G AFF3 Missense_Mutation p.Q25H 0.24 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-22-5491-01 2 109086545 109086545 G A GCC2 Missense_Mutation p.E254K 0.05 tolerated(0.06) benign(0.004) TCGA-22-5491-01 2 11922351 11922351 G C LPIN1 Missense_Mutation p.E377Q 0.14 tolerated(0.1) benign(0.124) TCGA-22-5491-01 2 131487737 131487737 G T GPR148 Missense_Mutation p.R338M 0.44 deleterious(0.01) possibly_damaging(0.819) TCGA-22-5491-01 2 132021608 132021608 C A POTEE Silent p.T860T 0.03 TCGA-22-5491-01 2 141232707 141232707 C A LRP1B Missense_Mutation p.V3209F 0.17 benign(0.403) TCGA-22-5491-01 2 152276711 152276711 G C RIF1 Missense_Mutation p.E171Q 0.26 deleterious(0) probably_damaging(1) TCGA-22-5491-01 2 152473910 152473910 A C NEB Missense_Mutation p.L3717V 0.22 probably_damaging(0.936) TCGA-22-5491-01 2 160284489 160284489 C G BAZ2B Missense_Mutation p.R810T 0.31 possibly_damaging(0.721) TCGA-22-5491-01 2 168115271 168115271 G A XIRP2 3'UTR 0.35 TCGA-22-5491-01 2 170044630 170044630 C T LRP2 Missense_Mutation p.G3060R 0.32 possibly_damaging(0.722) TCGA-22-5491-01 2 170090097 170090097 A G LRP2 Missense_Mutation p.I1641T 0.46 benign(0.005) TCGA-22-5491-01 2 170537574 170537574 C G CCDC173 Missense_Mutation p.K79N 0.22 deleterious(0.01) possibly_damaging(0.545) TCGA-22-5491-01 2 172309682 172309682 C G DCAF17 Missense_Mutation p.L196V 0.20 tolerated(0.06) benign(0.132) TCGA-22-5491-01 2 176794784 176794784 C - KIAA1715 Frame_Shift_Del p.A400Pfs*3 0.29 TCGA-22-5491-01 2 179605892 179605892 G A TTN Missense_Mutation p.A4023V 0.06 TCGA-22-5491-01 2 188223976 188223976 T C CALCRL Missense_Mutation p.I269V 0.47 tolerated(0.09) benign(0.1) TCGA-22-5491-01 2 20137623 20137623 G A WDR35 Silent p.G727G 0.37 TCGA-22-5491-01 2 201853065 201853065 T G FAM126B Missense_Mutation p.E304A 0.43 tolerated(0.17) probably_damaging(0.951) TCGA-22-5491-01 2 207460864 207460864 C A ADAM23 Silent p.P779P 0.34 TCGA-22-5491-01 2 218713626 218713626 G T TNS1 Silent p.T413T 0.17 TCGA-22-5491-01 2 220156190 220156190 A T PTPRN Splice_Site p.X910_splice 0.43 TCGA-22-5491-01 2 220357321 220357321 G A SPEG Missense_Mutation p.R3206Q 0.05 probably_damaging(0.997) TCGA-22-5491-01 2 230724207 230724207 C T TRIP12 Missense_Mutation p.G61E 0.04 deleterious_low_confidence(0.03) probably_damaging(0.994) TCGA-22-5491-01 2 233243440 233243440 G A ALPP 5'UTR 0.24 TCGA-22-5491-01 2 233408046 233408046 C A CHRNG Missense_Mutation p.F289L 0.18 tolerated(0.66) benign(0.342) TCGA-22-5491-01 2 233409214 233409214 C G CHRNG Silent p.L391L 0.19 TCGA-22-5491-01 2 233785170 233785170 C A NGEF Nonsense_Mutation p.E218* 0.28 TCGA-22-5491-01 2 27439399 27439399 C T ATRAID Missense_Mutation p.P221S 0.19 deleterious(0) probably_damaging(0.999) TCGA-22-5491-01 2 28002352 28002352 G T MRPL33 3'UTR 0.07 TCGA-22-5491-01 2 7023640 7023640 G A RSAD2 Missense_Mutation p.R162Q 0.44 tolerated(0.34) benign(0.044) TCGA-22-5491-01 2 71708055 71708055 C T DYSF Missense_Mutation p.P45L 0.35 deleterious(0) probably_damaging(1) TCGA-22-5491-01 2 96686956 96686956 G C GPAT2 3'Flank 0.20 TCGA-22-5491-01 2 9770387 9770387 G C YWHAQ Missense_Mutation p.I65M 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.873) TCGA-22-5491-01 3 101540528 101540528 C G NXPE3 Silent p.L470L 0.09 TCGA-22-5491-01 3 108269963 108269963 C A KIAA1524 3'UTR 0.17 TCGA-22-5491-01 3 115395016 115395016 G A GAP43 Missense_Mutation p.E99K 0.06 tolerated(0.06) possibly_damaging(0.453) TCGA-22-5491-01 3 121649733 121649733 G C SLC15A2 Missense_Mutation p.D534H 0.09 tolerated(0.05) benign(0.027) TCGA-22-5491-01 3 125702294 125702294 G C ROPN1B 3'UTR 0.19 TCGA-22-5491-01 3 125855651 125855651 C G ALDH1L1 Missense_Mutation p.E444Q 0.15 tolerated(0.13) probably_damaging(0.989) TCGA-22-5491-01 3 126218239 126218239 C T UROC1 Silent p.E479E 0.11 TCGA-22-5491-01 3 126218994 126218994 C G UROC1 Silent p.L443L 0.10 TCGA-22-5491-01 3 126382175 126382175 C T NUP210P1 Intron 0.16 TCGA-22-5491-01 3 129282078 129282078 C T PLXND1 Silent p.T1509T 0.09 TCGA-22-5491-01 3 130318603 130318603 C A COL6A6 Silent p.G1534G 0.12 TCGA-22-5491-01 3 148744819 148744819 G C GYG1 3'UTR 0.19 TCGA-22-5491-01 3 154001039 154001039 G A DHX36 Missense_Mutation p.R772C 0.63 deleterious(0.04) benign(0.049) TCGA-22-5491-01 3 154055653 154055653 G T GPR149 Silent p.P677P 0.17 TCGA-22-5491-01 3 155232559 155232559 C A PLCH1 Missense_Mutation p.A517S 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-22-5491-01 3 155861003 155861003 G A KCNAB1 Intron 0.25 TCGA-22-5491-01 3 167507060 167507060 C G SERPINI1 Missense_Mutation p.F48L 0.07 deleterious(0.01) probably_damaging(0.91) TCGA-22-5491-01 3 169540078 169540078 C T LRRIQ4 Silent p.L123L 0.11 TCGA-22-5491-01 3 170016837 170016837 G T PRKCI Missense_Mutation p.G548C 0.05 deleterious(0.03) possibly_damaging(0.885) TCGA-22-5491-01 3 184062659 184062659 A G FAM131A Silent p.P334P 0.08 TCGA-22-5491-01 3 18436276 18436276 G A SATB1 Missense_Mutation p.S295F 0.16 tolerated(0.17) benign(0.424) TCGA-22-5491-01 3 186362640 186362640 T C FETUB Silent p.L175L 0.07 TCGA-22-5491-01 3 193028476 193028476 T C ATP13A5 Missense_Mutation p.M826V 0.10 deleterious(0) probably_damaging(0.911) TCGA-22-5491-01 3 195487765 195487765 G A MUC4 Silent p.N4946N 0.06 TCGA-22-5491-01 3 195515857 195515857 G A MUC4 Missense_Mutation p.S865F 0.09 unknown(0) TCGA-22-5491-01 3 195515959 195515959 G A MUC4 Missense_Mutation p.S831L 0.10 unknown(0) TCGA-22-5491-01 3 195517057 195517057 G A MUC4 Missense_Mutation p.P465L 0.10 unknown(0) TCGA-22-5491-01 3 196792249 196792249 C T DLG1 Silent p.Q790Q 0.10 TCGA-22-5491-01 3 197665535 197665535 G C IQCG Missense_Mutation p.I133M 0.74 tolerated(0.13) benign(0.04) TCGA-22-5491-01 3 52257047 52257047 C T TLR9 Missense_Mutation p.G583R 0.05 tolerated(0.26) probably_damaging(1) TCGA-22-5491-01 3 56600985 56600985 G C CCDC66 Missense_Mutation p.E240Q 0.37 tolerated(0.47) benign(0.377) TCGA-22-5491-01 3 64527226 64527226 C T ADAMTS9 Silent p.L1756L 0.30 TCGA-22-5491-01 3 73433635 73433635 G A PDZRN3 Silent p.S694S 0.64 TCGA-22-5491-01 3 89480480 89480480 G A EPHA3 Missense_Mutation p.D773N 0.33 tolerated(0.06) probably_damaging(0.988) TCGA-22-5491-01 4 100870459 100870459 C G H2AFZ Missense_Mutation p.A56P 0.25 deleterious(0.01) benign(0.329) TCGA-22-5491-01 4 134084129 134084129 C G PCDH10 Intron 0.35 TCGA-22-5491-01 4 138452960 138452960 C G PCDH18 Missense_Mutation p.E95Q 0.26 deleterious(0) probably_damaging(1) TCGA-22-5491-01 4 155670262 155670262 C A LRAT Missense_Mutation p.P223T 0.28 tolerated(0.08) benign(0.196) TCGA-22-5491-01 4 169157421 169157421 G A DDX60 Silent p.F1505F 0.07 TCGA-22-5491-01 4 169362543 169362543 A C DDX60L Missense_Mutation p.F413L 0.23 tolerated(0.25) benign(0.012) TCGA-22-5491-01 4 175897229 175897229 C G ADAM29 Missense_Mutation p.Q185E 0.31 deleterious(0.03) benign(0.001) TCGA-22-5491-01 4 177608578 177608578 C A VEGFC Missense_Mutation p.S303I 0.27 deleterious(0) possibly_damaging(0.805) TCGA-22-5491-01 4 186380457 186380457 A C CCDC110 Missense_Mutation p.I428M 0.34 tolerated(0.1) probably_damaging(0.962) TCGA-22-5491-01 4 3768879 3768879 C G ADRA2C Missense_Mutation p.I182M 0.17 deleterious(0) probably_damaging(0.99) TCGA-22-5491-01 4 39449075 39449075 A T KLB Missense_Mutation p.Y910F 0.25 deleterious(0) probably_damaging(0.979) TCGA-22-5491-01 4 44709814 44709814 C G GNPDA2 Missense_Mutation p.D242H 0.62 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-22-5491-01 4 55602720 55602720 G T KIT Silent p.T847T 0.53 TCGA-22-5491-01 4 6050631 6050631 G C JAKMIP1 Missense_Mutation p.Q661E 0.21 deleterious(0) probably_damaging(0.99) TCGA-22-5491-01 4 8603071 8603071 C T CPZ Missense_Mutation p.R115C 0.52 tolerated(0.05) possibly_damaging(0.717) TCGA-22-5491-01 4 88766127 88766127 A T MEPE Splice_Site p.X37_splice 0.30 TCGA-22-5491-01 5 110820063 110820063 C A CAMK4 Missense_Mutation p.L441M 0.76 deleterious_low_confidence(0.04) possibly_damaging(0.824) TCGA-22-5491-01 5 1219621 1219621 C T SLC6A19 Silent p.G460G 0.17 TCGA-22-5491-01 5 1264568 1264568 C T TERT Missense_Mutation p.G932S 0.42 deleterious(0) probably_damaging(0.99) TCGA-22-5491-01 5 127670448 127670448 C G FBN2 Silent p.L1354L 0.78 TCGA-22-5491-01 5 128957936 128957936 C T ADAMTS19 Silent p.V549V 0.30 TCGA-22-5491-01 5 133496743 133496743 C T SKP1 Missense_Mutation p.D84N 0.37 tolerated(0.08) benign(0.001) TCGA-22-5491-01 5 134086614 134086614 G C CAMLG Missense_Mutation p.D289H 0.71 tolerated(0.18) benign(0.364) TCGA-22-5491-01 5 13721263 13721263 C G DNAH5 Missense_Mutation p.R4042P 0.34 possibly_damaging(0.767) TCGA-22-5491-01 5 13894861 13894861 G A DNAH5 Missense_Mutation p.H777Y 0.18 benign(0.415) TCGA-22-5491-01 5 139060756 139060756 C T CXXC5 Silent p.I216I 0.26 TCGA-22-5491-01 5 13923469 13923469 C T DNAH5 Missense_Mutation p.D120N 0.29 possibly_damaging(0.555) TCGA-22-5491-01 5 139905841 139905841 G T ANKHD1 Missense_Mutation p.G1585C 0.28 probably_damaging(1) TCGA-22-5491-01 5 140242431 140242431 C G AC005609.1 Missense_Mutation p.R182T 0.30 benign(0.402) TCGA-22-5491-01 5 140719400 140719400 A T PCDHGA2 Missense_Mutation p.T288S 0.07 tolerated_low_confidence(0.31) benign(0.072) TCGA-22-5491-01 5 159855639 159855639 C T PTTG1 Missense_Mutation p.S187L 0.66 tolerated(0.06) benign(0.038) TCGA-22-5491-01 5 161981 161981 G C PLEKHG4B Silent p.L501L 0.19 TCGA-22-5491-01 5 178634588 178634588 C A ADAMTS2 Missense_Mutation p.G273C 0.69 deleterious(0) probably_damaging(0.999) TCGA-22-5491-01 5 178634589 178634589 C A ADAMTS2 Silent p.L272L 0.69 TCGA-22-5491-01 5 180001041 180001041 C A CNOT6 Silent p.I505I 0.14 TCGA-22-5491-01 5 21752083 21752083 G A CDH12 Silent p.F716F 0.16 TCGA-22-5491-01 5 32048766 32048766 G A PDZD2 Silent p.L547L 0.09 TCGA-22-5491-01 5 37305197 37305197 C T NUP155 Missense_Mutation p.D1007N 0.22 tolerated(0.27) possibly_damaging(0.53) TCGA-22-5491-01 5 38338836 38338836 C T EGFLAM Nonsense_Mutation p.Q82* 0.30 TCGA-22-5491-01 5 41004926 41004926 G T MROH2B Missense_Mutation p.Q1321K 0.51 tolerated(0.25) benign(0.078) TCGA-22-5491-01 5 41069802 41069802 A G MROH2B Silent p.I27I 0.38 TCGA-22-5491-01 5 78411716 78411716 G A BHMT Missense_Mutation p.E54K 0.33 deleterious(0) possibly_damaging(0.664) TCGA-22-5491-01 5 93388891 93388891 C T FAM172A Missense_Mutation p.D50N 0.57 deleterious(0.01) probably_damaging(0.96) TCGA-22-5491-01 5 93410402 93410402 G C FAM172A Missense_Mutation p.Q19E 0.15 deleterious_low_confidence(0.01) benign(0.023) TCGA-22-5491-01 6 123319198 123319198 C A CLVS2 Silent p.T92T 0.41 TCGA-22-5491-01 6 128411138 128411138 C T PTPRK Splice_Site p.X388_splice 0.16 TCGA-22-5491-01 6 135516964 135516964 G T MYB Missense_Mutation p.A343S 0.37 tolerated(0.9) probably_damaging(0.96) TCGA-22-5491-01 6 1390512 1390512 C T FOXF2 Silent p.V110V 0.36 TCGA-22-5491-01 6 146625764 146625764 G A GRM1 Missense_Mutation p.R323K 0.28 deleterious(0) possibly_damaging(0.893) TCGA-22-5491-01 6 146720267 146720267 C A GRM1 Missense_Mutation p.P698T 0.29 deleterious(0) probably_damaging(0.997) TCGA-22-5491-01 6 147680256 147680256 C T STXBP5 Missense_Mutation p.S781L 0.26 deleterious(0.01) possibly_damaging(0.87) TCGA-22-5491-01 6 152763307 152763307 C T SYNE1 Missense_Mutation p.G1304E 0.30 benign(0.042) TCGA-22-5491-01 6 15501270 15501270 G A JARID2 Missense_Mutation p.R693Q 0.26 deleterious(0) probably_damaging(1) TCGA-22-5491-01 6 155728279 155728279 G T NOX3 Missense_Mutation p.A522D 0.40 deleterious(0) probably_damaging(1) TCGA-22-5491-01 6 158014099 158014099 G T ZDHHC14 Silent p.V162V 0.43 TCGA-22-5491-01 6 160328118 160328118 C A MAS1 Missense_Mutation p.P44Q 0.41 tolerated(0.07) possibly_damaging(0.629) TCGA-22-5491-01 6 26393175 26393175 G T BTN2A2 Missense_Mutation p.G518W 0.11 tolerated(0.08) benign(0.112) TCGA-22-5491-01 6 28333415 28333415 G A ZKSCAN3 Missense_Mutation p.A324T 0.54 tolerated(0.15) possibly_damaging(0.54) TCGA-22-5491-01 6 31868521 31868521 C T ZBTB12 Missense_Mutation p.E188K 0.21 tolerated(0.81) benign(0.292) TCGA-22-5491-01 6 31868998 31868998 C T ZBTB12 Missense_Mutation p.E29K 0.24 tolerated(0.14) possibly_damaging(0.621) TCGA-22-5491-01 6 33132203 33132203 G A COL11A2 Silent p.L1551L 0.23 TCGA-22-5491-01 6 34826439 34826439 C T UHRF1BP1 Missense_Mutation p.S769F 0.06 deleterious(0.03) benign(0.035) TCGA-22-5491-01 6 36929668 36929668 C A PI16 Missense_Mutation p.N170K 0.45 deleterious(0.02) probably_damaging(0.999) TCGA-22-5491-01 6 43163986 43163986 G A CUL9 Silent p.L856L 0.09 TCGA-22-5491-01 6 56438586 56438586 C T DST Missense_Mutation p.G1753D 0.32 probably_damaging(0.988) TCGA-22-5491-01 6 76580394 76580394 C T MYO6 Nonsense_Mutation p.R659* 0.22 TCGA-22-5491-01 6 76782212 76782212 T C IMPG1 5'UTR 0.11 TCGA-22-5491-01 6 80732133 80732133 G TT TTK Frame_Shift_Ins p.A401Ffs*17 0.12 TCGA-22-5491-01 6 84371269 84371269 G T SNAP91 Missense_Mutation p.A135D 0.27 deleterious(0) unknown(0) TCGA-22-5491-01 6 90581069 90581069 G C CASP8AP2 RNA 0.47 TCGA-22-5491-01 7 100275765 100275765 C T GNB2 Missense_Mutation p.A181V 0.43 tolerated(0.4) benign(0.002) TCGA-22-5491-01 7 101840185 101840185 G T CUX1 Missense_Mutation p.Q509H 0.47 tolerated(0.08) unknown(0) TCGA-22-5491-01 7 103050851 103050851 C A SLC26A5 Missense_Mutation p.G239V 0.27 deleterious(0) possibly_damaging(0.542) TCGA-22-5491-01 7 107820820 107820820 C T NRCAM Missense_Mutation p.E900K 0.34 tolerated(0.48) probably_damaging(0.966) TCGA-22-5491-01 7 11445965 11445965 T C THSD7A Missense_Mutation p.N1400S 0.18 tolerated(0.43) benign(0.017) TCGA-22-5491-01 7 11501683 11501683 T C THSD7A Missense_Mutation p.Y819C 0.36 deleterious(0.01) possibly_damaging(0.762) TCGA-22-5491-01 7 119914873 119914873 C A KCND2 Missense_Mutation p.P63T 0.38 deleterious(0) probably_damaging(1) TCGA-22-5491-01 7 128807733 128807733 C G TSPAN33 3'UTR 0.14 TCGA-22-5491-01 7 142008789 142008789 C A TRBV3-1 Missense_Mutation p.P88T 0.26 tolerated(0.05) benign(0.445) TCGA-22-5491-01 7 142481256 142481256 G A PRSS3P2 RNA 0.41 TCGA-22-5491-01 7 149476004 149476004 G T SSPO RNA 0.11 TCGA-22-5491-01 7 15240918 15240918 A T AGMO Missense_Mutation p.W444R 0.33 tolerated_low_confidence(0.33) benign(0.136) TCGA-22-5491-01 7 23226676 23226676 G A NUPL2 Missense_Mutation p.G119E 0.41 tolerated(0.58) benign(0.258) TCGA-22-5491-01 7 27195942 27195942 C T HOXA7 Missense_Mutation p.D75N 0.43 tolerated(0.1) possibly_damaging(0.715) TCGA-22-5491-01 7 27203131 27203131 G T HOXA9 3'UTR 0.33 TCGA-22-5491-01 7 2962953 2962953 G A CARD11 Missense_Mutation p.S652L 0.14 tolerated(0.11) probably_damaging(0.972) TCGA-22-5491-01 7 31792947 31792947 G A PDE1C 3'UTR 0.13 TCGA-22-5491-01 7 31793022 31793022 G A PDE1C Silent p.I762I 0.11 TCGA-22-5491-01 7 33573664 33573664 G A BBS9 Silent p.L799L 0.21 TCGA-22-5491-01 7 44192988 44192988 C T GCK Silent p.E41E 0.04 TCGA-22-5491-01 7 44193044 44193044 C G GCK Missense_Mutation p.E23Q 0.03 tolerated(0.29) possibly_damaging(0.506) TCGA-22-5491-01 7 4900561 4900561 C T PAPOLB Missense_Mutation p.R293Q 0.06 tolerated(0.6) benign(0.015) TCGA-22-5491-01 7 76797022 76797022 G C CCDC146 Missense_Mutation p.E13Q 0.20 deleterious(0.03) unknown(0) TCGA-22-5491-01 7 87049377 87049377 C T ABCB4 Silent p.G777G 0.17 TCGA-22-5491-01 7 89753428 89753428 T G RP5-1121E10.2 5'Flank 0.45 TCGA-22-5491-01 7 90042641 90042641 G T CLDN12 Missense_Mutation p.M217I 0.05 tolerated(0.37) benign(0.002) TCGA-22-5491-01 7 94174881 94174881 G T CASD1 Missense_Mutation p.V501L 0.33 deleterious(0.01) possibly_damaging(0.892) TCGA-22-5491-01 8 108913390 108913390 C G RSPO2 Missense_Mutation p.K215N 0.26 tolerated(0.19) benign(0.234) TCGA-22-5491-01 8 110100362 110100362 T A TRHR Silent p.A207A 0.38 TCGA-22-5491-01 8 110406702 110406702 C T PKHD1L1 Nonsense_Mutation p.Q267* 0.33 TCGA-22-5491-01 8 113694723 113694723 A T CSMD3 Nonsense_Mutation p.C875* 0.36 TCGA-22-5491-01 8 121301921 121301921 C T COL14A1 Silent p.N1384N 0.12 TCGA-22-5491-01 8 131795975 131795975 A G ADCY8 Missense_Mutation p.I1077T 0.38 deleterious(0.03) benign(0.001) TCGA-22-5491-01 8 13251104 13251104 A C DLC1 Silent p.S424S 0.65 TCGA-22-5491-01 8 143955898 143955898 A T CYP11B1 Missense_Mutation p.L468Q 0.29 deleterious(0) probably_damaging(1) TCGA-22-5491-01 8 145541059 145541059 G T DGAT1 Missense_Mutation p.S344Y 0.17 deleterious(0) probably_damaging(0.998) TCGA-22-5491-01 8 30700215 30700215 C - TEX15 Frame_Shift_Del p.E2107Kfs*21 0.46 TCGA-22-5491-01 8 32505506 32505506 C G NRG1 Intron 0.34 TCGA-22-5491-01 8 59720307 59720307 C T TOX Silent p.%3D 0.12 TCGA-22-5491-01 8 69020434 69020434 A G PREX2 Missense_Mutation p.T936A 0.41 deleterious(0) probably_damaging(0.978) TCGA-22-5491-01 8 80992640 80992640 C T TPD52 Missense_Mutation p.D17N 0.37 tolerated(0.18) benign(0.224) TCGA-22-5491-01 9 105767978 105767978 G A CYLC2 3'UTR 0.15 TCGA-22-5491-01 9 107289089 107289089 G A OR13C4 Silent p.I134I 0.18 TCGA-22-5491-01 9 108145413 108145413 G T SLC44A1 Missense_Mutation p.V548F 0.22 deleterious(0) probably_damaging(0.971) TCGA-22-5491-01 9 137300036 137300036 C T RXRA Silent p.I107I 0.33 TCGA-22-5491-01 9 139390779 139390779 G T NOTCH1 Nonsense_Mutation p.S2471* 0.33 TCGA-22-5491-01 9 139390786 139390786 G A NOTCH1 Missense_Mutation p.P2469S 0.30 tolerated(0.15) probably_damaging(0.998) TCGA-22-5491-01 9 140196134 140196134 C T NRARP Missense_Mutation p.D83N 0.37 tolerated(0.11) benign(0.285) TCGA-22-5491-01 9 140196233 140196233 C A NRARP Nonsense_Mutation p.E50* 0.30 TCGA-22-5491-01 9 21409512 21409512 G C IFNA8 Missense_Mutation p.D113H 0.33 tolerated(1) benign(0.005) TCGA-22-5491-01 9 5765672 5765672 C G KIAA1432 Nonsense_Mutation p.S1004* 0.66 TCGA-22-5491-01 9 69127057 69127057 G C PGM5P2 RNA 0.20 TCGA-22-5491-01 9 95491487 95491487 T A BICD2 Missense_Mutation p.K91M 0.20 deleterious(0) probably_damaging(0.987) TCGA-22-5491-01 X 109694327 109694327 C T RGAG1 Missense_Mutation p.S161F 0.29 deleterious(0) probably_damaging(0.986) TCGA-22-5491-01 X 118370591 118370591 A G PGRMC1 Missense_Mutation p.I89V 0.62 tolerated(0.45) benign(0.305) TCGA-22-5491-01 X 130215674 130215674 G A ARHGAP36 Missense_Mutation p.R12K 0.80 tolerated_low_confidence(0.15) probably_damaging(0.952) TCGA-22-5491-01 X 1325354 1325354 G A CRLF2 Silent p.F107F 0.08 TCGA-22-5491-01 X 13771542 13771542 G A OFD1 Missense_Mutation p.D371N 0.90 tolerated(0.23) benign(0.177) TCGA-22-5491-01 X 144906425 144906425 T A SLITRK2 Missense_Mutation p.S828T 0.16 tolerated(1) benign(0) TCGA-22-5491-01 X 144906426 144906426 C T SLITRK2 Missense_Mutation p.S828L 0.16 tolerated(0.16) benign(0.001) TCGA-22-5491-01 X 15540664 15540664 C G BMX Missense_Mutation p.P236A 0.16 tolerated(0.74) benign(0.02) TCGA-22-5491-01 X 15646095 15646095 C T TMEM27 Silent p.%3D 0.16 TCGA-22-5491-01 X 27766547 27766547 G C DCAF8L2 Missense_Mutation p.R512T 0.24 tolerated(0.06) benign(0.122) TCGA-22-5491-01 X 64753613 64753613 G A LAS1L Missense_Mutation p.S80L 0.39 tolerated(1) benign(0.002) TCGA-22-5491-01 X 72433467 72433467 C G NAP1L2 Missense_Mutation p.E288Q 0.05 deleterious(0) probably_damaging(0.998) TCGA-22-5491-01 X 72434097 72434097 C T NAP1L2 Missense_Mutation p.D78N 0.06 tolerated(0.37) benign(0.001) TCGA-22-5492-01 10 102052704 102052704 C G PKD2L1 Splice_Site p.X627_splice 0.20 TCGA-22-5492-01 10 112258016 112258016 A T DUSP5 Missense_Mutation p.N46I 0.20 deleterious(0) possibly_damaging(0.824) TCGA-22-5492-01 10 134218192 134218192 A G PWWP2B Missense_Mutation p.N63S 0.23 tolerated(0.84) benign(0.008) TCGA-22-5492-01 10 134912164 134912164 A G GPR123 Missense_Mutation p.K51R 0.34 deleterious(0.03) benign(0.078) TCGA-22-5492-01 10 135193889 135193889 C G PAOX Missense_Mutation p.L190V 0.19 tolerated(1) benign(0.045) TCGA-22-5492-01 10 135369308 135369308 C T SYCE1 Missense_Mutation p.R232H 0.40 tolerated(0.09) probably_damaging(1) TCGA-22-5492-01 10 53227593 53227593 A G PRKG1 Missense_Mutation p.K197E 0.17 deleterious(0.02) benign(0.012) TCGA-22-5492-01 10 60147948 60147948 A G TFAM Splice_Site p.X74_splice 0.35 TCGA-22-5492-01 10 8007226 8007226 G T TAF3 Missense_Mutation p.A585S 0.23 tolerated_low_confidence(0.95) benign(0.001) TCGA-22-5492-01 10 81373017 81373017 G A SFTPA1 Missense_Mutation p.R137K 0.19 tolerated(0.63) benign(0.002) TCGA-22-5492-01 11 124743597 124743597 C A ROBO3 Missense_Mutation p.D541E 0.14 tolerated(0.38) benign(0.055) TCGA-22-5492-01 11 124794863 124794863 T A HEPACAM Missense_Mutation p.D63V 0.26 deleterious(0) probably_damaging(0.995) TCGA-22-5492-01 11 126136409 126136409 C G SRPR Missense_Mutation p.G268R 0.29 deleterious(0.05) probably_damaging(0.913) TCGA-22-5492-01 11 1267408 1267408 C A MUC5B Missense_Mutation p.P3100T 0.25 unknown(0) TCGA-22-5492-01 11 1432649 1432649 C A BRSK2 Silent p.G5G 0.15 TCGA-22-5492-01 11 45203858 45203858 G T PRDM11 Missense_Mutation p.D61Y 0.12 tolerated(0.06) probably_damaging(0.93) TCGA-22-5492-01 11 48267363 48267363 C T OR4X2 Silent p.F236F 0.44 TCGA-22-5492-01 11 49805446 49805446 T A RP11-707M1.1 RNA 0.29 TCGA-22-5492-01 11 5443646 5443646 C A OR51Q1 Missense_Mutation p.D72E 0.32 tolerated(0.05) probably_damaging(0.999) TCGA-22-5492-01 11 5443647 5443647 C A OR51Q1 Missense_Mutation p.L73M 0.31 tolerated(0.18) probably_damaging(0.999) TCGA-22-5492-01 11 55587447 55587447 T C OR5D18 Silent p.F114F 0.29 TCGA-22-5492-01 11 55944433 55944433 T C OR5J2 Silent p.L114L 0.26 TCGA-22-5492-01 11 5632516 5632516 T C TRIM6 Missense_Mutation p.Y499H 0.30 deleterious(0) probably_damaging(0.955) TCGA-22-5492-01 11 60889118 60889118 G A CD5 Missense_Mutation p.G281S 0.15 deleterious(0.04) possibly_damaging(0.859) TCGA-22-5492-01 11 6262857 6262857 G C CNGA4 Missense_Mutation p.G372R 0.29 deleterious(0) probably_damaging(1) TCGA-22-5492-01 11 65721086 65721086 G T TSGA10IP RNA 0.30 TCGA-22-5492-01 11 6898394 6898394 C A OR10A4 Silent p.P172P 0.29 TCGA-22-5492-01 11 75442316 75442316 C G MOGAT2 Missense_Mutation p.H330Q 0.17 tolerated(0.09) probably_damaging(0.997) TCGA-22-5492-01 11 7982313 7982313 T A NLRP10 Silent p.T282T 0.33 TCGA-22-5492-01 11 85418532 85418532 G T SYTL2 Silent p.G1019G 0.17 TCGA-22-5492-01 12 104376576 104376576 G A TDG Splice_Site p.X160_splice 0.22 TCGA-22-5492-01 12 106460732 106460732 C A NUAK1 Missense_Mutation p.D612Y 0.14 deleterious(0.01) probably_damaging(0.935) TCGA-22-5492-01 12 110655915 110655915 T C IFT81 Missense_Mutation p.W639R 0.29 deleterious(0) probably_damaging(0.998) TCGA-22-5492-01 12 121157870 121157870 G T UNC119B 3'UTR 0.35 TCGA-22-5492-01 12 122622070 122622070 C T MLXIP Missense_Mutation p.P696L 0.33 tolerated(0.05) probably_damaging(0.999) TCGA-22-5492-01 12 12336941 12336941 G A LRP6 Silent p.L317L 0.22 TCGA-22-5492-01 12 56743181 56743181 C T STAT2 Intron 0.16 TCGA-22-5492-01 12 57881775 57881775 C T MARS 5'UTR 0.31 TCGA-22-5492-01 12 57957917 57957917 G A KIF5A Missense_Mutation p.M106I 0.26 deleterious(0.01) possibly_damaging(0.732) TCGA-22-5492-01 12 69218345 69218345 A C MDM2 Missense_Mutation p.Q146P 0.23 tolerated(0.17) benign(0.244) TCGA-22-5492-01 12 78571406 78571406 C A NAV3 Intron 0.37 TCGA-22-5492-01 12 92821903 92821903 T C CLLU1OS Missense_Mutation p.N7S 0.28 tolerated_low_confidence(0.78) possibly_damaging(0.486) TCGA-22-5492-01 12 95535241 95535241 C G FGD6 Missense_Mutation p.Q920H 0.32 deleterious(0.01) benign(0.403) TCGA-22-5492-01 13 113459361 113459361 G T ATP11A Splice_Site p.X84_splice 0.39 TCGA-22-5492-01 13 49580320 49580320 A G FNDC3A 5'UTR 0.30 TCGA-22-5492-01 14 102483190 102483190 G A DYNC1H1 Missense_Mutation p.V2568I 0.32 possibly_damaging(0.787) TCGA-22-5492-01 14 106667768 106667768 C A IGHV3-20 Missense_Mutation p.W55L 0.22 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-22-5492-01 14 107131102 107131102 G T IGHV3-66 Silent p.S93S 0.18 TCGA-22-5492-01 14 22217816 22217816 A G TRAV5 Missense_Mutation p.Y56C 0.39 deleterious(0) probably_damaging(0.999) TCGA-22-5492-01 14 22409734 22409734 A G TRAV9-2 Missense_Mutation p.K75R 0.24 tolerated(0.22) benign(0.132) TCGA-22-5492-01 14 23390249 23390249 C A PRMT5 Missense_Mutation p.R593L 0.16 tolerated(0.17) benign(0.176) TCGA-22-5492-01 14 23518860 23518860 T C CDH24 Missense_Mutation p.N563D 0.30 deleterious(0.01) probably_damaging(0.993) TCGA-22-5492-01 14 28733965 28733965 G C BNIP3P1 RNA 0.15 TCGA-22-5492-01 14 47351272 47351272 T C MDGA2 Silent p.S797S 0.26 TCGA-22-5492-01 14 57857808 57857808 G T NAA30 Missense_Mutation p.D45Y 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-22-5492-01 14 58471337 58471337 C G C14orf37 3'UTR 0.26 TCGA-22-5492-01 14 75514257 75514257 C G MLH3 Missense_Mutation p.S701T 0.28 tolerated(0.39) benign(0.006) TCGA-22-5492-01 14 93814406 93814406 G A COX8C Silent p.T53T 0.18 TCGA-22-5492-01 14 95030027 95030027 A T SERPINA4 Missense_Mutation p.T70S 0.30 tolerated(0.77) benign(0.01) TCGA-22-5492-01 15 23812324 23812324 T G MKRN3 Silent p.L465L 0.27 TCGA-22-5492-01 15 23889139 23889139 A G MAGEL2 3'UTR 0.33 TCGA-22-5492-01 15 30092866 30092866 T C TJP1 Missense_Mutation p.T23A 0.23 deleterious(0) benign(0.171) TCGA-22-5492-01 15 33955095 33955095 G T RYR3 Missense_Mutation p.E1788D 0.23 benign(0) TCGA-22-5492-01 15 35084669 35084669 C A ACTC1 Missense_Mutation p.D186Y 0.35 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-22-5492-01 15 41308393 41308393 C T INO80 Missense_Mutation p.D1099N 0.22 deleterious(0) benign(0.42) TCGA-22-5492-01 15 68434669 68434669 A C PIAS1 Missense_Mutation p.Q199P 0.29 deleterious(0) probably_damaging(0.995) TCGA-22-5492-01 15 72534978 72534978 T C PARP6 Missense_Mutation p.M542V 0.38 tolerated(0.49) benign(0.004) TCGA-22-5492-01 15 75647319 75647319 C T NEIL1 Missense_Mutation p.R373W 0.35 deleterious_low_confidence(0) benign(0.004) TCGA-22-5492-01 16 27375219 27375222 CCTC - IL4R 3'UTR 0.23 TCGA-22-5492-01 16 27375231 27375231 C T IL4R 3'UTR 0.24 TCGA-22-5492-01 16 3119385 3119385 G A IL32 3'UTR 0.26 TCGA-22-5492-01 16 67694091 67694091 G A ACD Silent p.P97P 0.29 TCGA-22-5492-01 16 76556015 76556015 C A CNTNAP4 Missense_Mutation p.N799K 0.33 deleterious(0.01) possibly_damaging(0.878) TCGA-22-5492-01 16 77369771 77369771 C A ADAMTS18 Missense_Mutation p.G581W 0.22 deleterious(0) probably_damaging(1) TCGA-22-5492-01 16 88902186 88902186 C A GALNS Silent p.T235T 0.18 TCGA-22-5492-01 17 12044544 12044544 A T MAP2K4 Silent p.P389P 0.24 TCGA-22-5492-01 17 18039093 18039093 G C MYO15A Missense_Mutation p.Q1517H 0.31 unknown(0) TCGA-22-5492-01 17 45361811 45361811 G T ITGB3 Missense_Mutation p.D122Y 0.26 deleterious(0) probably_damaging(0.998) TCGA-22-5492-01 17 4536516 4536516 G A ALOX15 Missense_Mutation p.A448V 0.15 deleterious(0.02) benign(0.193) TCGA-22-5492-01 17 56348155 56348155 G T MPO Silent p.P700P 0.28 TCGA-22-5492-01 17 7004863 7004863 G A ASGR2 3'UTR 0.37 TCGA-22-5492-01 17 73871553 73871553 C T TRIM47 Missense_Mutation p.D402N 0.19 tolerated(0.47) benign(0.103) TCGA-22-5492-01 17 7578188 7578188 C A TP53 Nonsense_Mutation p.E221* 0.31 TCGA-22-5492-01 17 79686879 79686879 G C SLC25A10 Missense_Mutation p.V251L 0.23 tolerated(1) benign(0.004) TCGA-22-5492-01 18 29125885 29125885 G C DSG2 Missense_Mutation p.D846H 0.22 tolerated(0.06) possibly_damaging(0.717) TCGA-22-5492-01 18 48604789 48604789 C A SMAD4 Missense_Mutation p.D537E 0.16 deleterious(0) probably_damaging(1) TCGA-22-5492-01 18 5419875 5419875 C T EPB41L3 Silent p.E447E 0.14 TCGA-22-5492-01 18 55270082 55270082 T C NARS Missense_Mutation p.M449V 0.33 deleterious(0) probably_damaging(0.993) TCGA-22-5492-01 18 56203604 56203604 A G ALPK2 Missense_Mutation p.V1272A 0.40 tolerated(1) benign(0.004) TCGA-22-5492-01 18 63477081 63477081 T C CDH7 Missense_Mutation p.Y118H 0.44 deleterious(0) probably_damaging(1) TCGA-22-5492-01 19 16791277 16791277 C T TMEM38A Silent p.I117I 0.38 TCGA-22-5492-01 19 17918639 17918639 G C B3GNT3 Missense_Mutation p.R8P 0.19 tolerated(0.19) benign(0.418) TCGA-22-5492-01 19 39912892 39912892 G T PLEKHG2 Silent p.L547L 0.28 TCGA-22-5492-01 19 43348748 43348748 T C PSG10P RNA 0.29 TCGA-22-5492-01 19 44844689 44844689 C A ZNF112 Missense_Mutation p.M7I 0.32 tolerated(0.1) benign(0.016) TCGA-22-5492-01 19 52618360 52618360 T A ZNF616 Missense_Mutation p.K686M 0.24 deleterious(0) possibly_damaging(0.848) TCGA-22-5492-01 19 52942496 52942496 C A ZNF534 Silent p.R608R 0.44 TCGA-22-5492-01 19 55048148 55048148 A T KIR3DX1 Nonsense_Mutation p.K239* 0.21 TCGA-22-5492-01 1 109524461 109524461 C A WDR47 Missense_Mutation p.W772C 0.30 deleterious(0) probably_damaging(1) TCGA-22-5492-01 1 144881450 144881450 T C PDE4DIP Missense_Mutation p.E1249G 0.15 deleterious(0) probably_damaging(0.999) TCGA-22-5492-01 1 151786031 151786031 C T RORC Silent p.E333E 0.26 TCGA-22-5492-01 1 157485497 157485497 G A FCRL5 Silent p.L968L 0.21 TCGA-22-5492-01 1 159166195 159166195 C T CADM3 Missense_Mutation p.R279C 0.33 deleterious(0) possibly_damaging(0.886) TCGA-22-5492-01 1 160784493 160784493 C T LY9 Silent p.Y338Y 0.24 TCGA-22-5492-01 1 167742573 167742573 T C MPZL1 Silent p.Y191Y 0.36 TCGA-22-5492-01 1 175092743 175092743 T C TNN Missense_Mutation p.V953A 0.34 deleterious(0) possibly_damaging(0.88) TCGA-22-5492-01 1 175334287 175334287 C G TNR Missense_Mutation p.E816Q 0.18 tolerated(0.08) benign(0.207) TCGA-22-5492-01 1 176738821 176738821 G T PAPPA2 Missense_Mutation p.D1468Y 0.29 deleterious(0) possibly_damaging(0.881) TCGA-22-5492-01 1 184588734 184588734 A G C1orf21 3'UTR 0.26 TCGA-22-5492-01 1 207647145 207647145 G C CR2 Splice_Site p.X719_splice 0.32 TCGA-22-5492-01 1 207696963 207696963 T C CR1 Silent p.P165P 0.17 TCGA-22-5492-01 1 212180086 212180086 C T INTS7 Silent p.Q258Q 0.24 TCGA-22-5492-01 1 215847809 215847809 C T USH2A Missense_Mutation p.D4482N 0.29 possibly_damaging(0.572) TCGA-22-5492-01 1 216019303 216019303 A G USH2A Missense_Mutation p.L2973P 0.21 probably_damaging(0.988) TCGA-22-5492-01 1 22846715 22846715 A C ZBTB40 Missense_Mutation p.T999P 0.16 deleterious(0.01) benign(0.129) TCGA-22-5492-01 1 228879123 228879123 A T RHOU Missense_Mutation p.N138I 0.14 deleterious(0) probably_damaging(0.994) TCGA-22-5492-01 1 229596517 229596517 C G NUP133 Splice_Site p.X896_splice 0.11 TCGA-22-5492-01 1 234367239 234367239 G A SLC35F3 Silent p.A120A 0.24 TCGA-22-5492-01 1 247587806 247587806 C A NLRP3 Missense_Mutation p.A354D 0.30 deleterious(0) probably_damaging(1) TCGA-22-5492-01 1 247978807 247978807 C A OR14A16 Silent p.T75T 0.20 TCGA-22-5492-01 1 29651779 29651779 G T PTPRU Missense_Mutation p.D1407Y 0.33 deleterious(0) probably_damaging(0.988) TCGA-22-5492-01 1 33060763 33060763 C T ZBTB8A Missense_Mutation p.P311L 0.25 probably_damaging(0.943) TCGA-22-5492-01 1 33099247 33099247 C A ZBTB8OS Missense_Mutation p.R121L 0.19 deleterious(0.02) probably_damaging(0.968) TCGA-22-5492-01 1 39800752 39800752 C T MACF1 Intron 0.16 TCGA-22-5492-01 1 39800780 39800780 G T MACF1 Intron 0.21 TCGA-22-5492-01 1 43804366 43804366 G A MPL Silent p.Q122Q 0.23 TCGA-22-5492-01 1 43898249 43898249 T G SZT2 Missense_Mutation p.I1778S 0.26 tolerated(0.53) benign(0) TCGA-22-5492-01 1 67208762 67208762 A G SGIP1 Missense_Mutation p.Y824C 0.20 deleterious(0.01) benign(0.078) TCGA-22-5492-01 1 71440049 71440049 T C PTGER3 Intron 0.24 TCGA-22-5492-01 1 71440051 71440051 G T PTGER3 Intron 0.24 TCGA-22-5492-01 1 7805028 7805028 G T CAMTA1 Missense_Mutation p.W1439L 0.26 tolerated(0.22) probably_damaging(0.993) TCGA-22-5492-01 1 7805029 7805029 G C CAMTA1 Missense_Mutation p.W1439C 0.23 deleterious(0) probably_damaging(0.998) TCGA-22-5492-01 1 78560770 78560770 G T GIPC2 Missense_Mutation p.K187N 0.23 deleterious(0.01) probably_damaging(0.948) TCGA-22-5492-01 1 78560771 78560771 G T GIPC2 Nonsense_Mutation p.E188* 0.22 TCGA-22-5492-01 20 33470660 33470660 G - ACSS2 Frame_Shift_Del p.Y82Tfs*5 0.21 TCGA-22-5492-01 20 419177 419177 C T TBC1D20 3'UTR 0.29 TCGA-22-5492-01 20 47887968 47887968 C A ZNFX1 Missense_Mutation p.W127C 0.24 tolerated_low_confidence(0.18) benign(0.379) TCGA-22-5492-01 20 47887969 47887969 C A ZNFX1 Missense_Mutation p.W127L 0.25 tolerated_low_confidence(0.66) benign(0.021) TCGA-22-5492-01 20 57569747 57569747 A G NELFCD 3'UTR 0.25 TCGA-22-5492-01 20 853651 853651 G A ANGPT4 Silent p.S488S 0.18 TCGA-22-5492-01 20 9434026 9434026 G A PLCB4 Silent p.T959T 0.37 TCGA-22-5492-01 21 10914394 10914394 A G TPTE Missense_Mutation p.V442A 0.08 tolerated(0.05) benign(0.443) TCGA-22-5492-01 21 11039090 11039090 T A BAGE2 RNA 0.04 TCGA-22-5492-01 21 32598070 32598070 G C TIAM1 Nonsense_Mutation p.S594* 0.27 TCGA-22-5492-01 21 46271493 46271493 G A PTTG1IP 3'UTR 0.34 TCGA-22-5492-01 22 18650677 18650677 G T USP18 Silent p.L167L 0.23 TCGA-22-5492-01 22 20929434 20929434 A G MED15 Missense_Mutation p.H396R 0.22 tolerated_low_confidence(1) unknown(0) TCGA-22-5492-01 22 21355637 21355637 G A THAP7 Silent p.P48P 0.25 TCGA-22-5492-01 2 116534843 116534843 G C DPP10 Missense_Mutation p.K431N 0.24 deleterious(0.03) benign(0.019) TCGA-22-5492-01 2 120714483 120714483 A G PTPN4 Missense_Mutation p.K682E 0.24 deleterious(0) possibly_damaging(0.764) TCGA-22-5492-01 2 125660468 125660468 G T CNTNAP5 Missense_Mutation p.G1148V 0.19 tolerated(0.1) benign(0.012) TCGA-22-5492-01 2 130738542 130738542 T C RAB6C 3'UTR 0.29 TCGA-22-5492-01 2 133539728 133539728 T C NCKAP5 Silent p.K1552K 0.20 TCGA-22-5492-01 2 160255379 160255379 C T BAZ2B Silent p.A975A 0.27 TCGA-22-5492-01 2 162735785 162735785 C A SLC4A10 Missense_Mutation p.P365T 0.17 deleterious(0) probably_damaging(1) TCGA-22-5492-01 2 166201106 166201106 T C SCN2A Silent p.N868N 0.33 TCGA-22-5492-01 2 171939356 171939356 T C TLK1 Missense_Mutation p.T89A 0.26 tolerated(0.94) benign(0.002) TCGA-22-5492-01 2 179402307 179402307 A G TTN Silent p.A33209A 0.17 TCGA-22-5492-01 2 196709795 196709795 G C DNAH7 Missense_Mutation p.T2959R 0.21 tolerated(0.06) benign(0.158) TCGA-22-5492-01 2 202725543 202725543 T C CDK15 Intron 0.29 TCGA-22-5492-01 2 207170724 207170724 G C ZDBF2 Missense_Mutation p.S491T 0.20 tolerated(0.07) benign(0.009) TCGA-22-5492-01 2 215440509 215440509 T C VWC2L Missense_Mutation p.S212P 0.27 tolerated(0.07) benign(0.143) TCGA-22-5492-01 2 220167470 220167470 C T PTPRN Missense_Mutation p.R156Q 0.33 tolerated(0.67) benign(0.168) TCGA-22-5492-01 2 227886820 227886820 A G COL4A4 Missense_Mutation p.M1387T 0.28 unknown(0) TCGA-22-5492-01 2 231405712 231405712 G T SP100 Splice_Site p.X777_splice 0.23 TCGA-22-5492-01 2 240929490 240929490 C T NDUFA10 Splice_Site p.X333_splice 0.29 TCGA-22-5492-01 2 241817438 241817438 G T AGXT Splice_Site p.X315_splice 0.17 TCGA-22-5492-01 2 25464474 25464474 T C DNMT3A Missense_Mutation p.K680R 0.25 tolerated(0.31) benign(0.04) TCGA-22-5492-01 2 60687659 60687659 C T BCL11A Silent p.G796G 0.08 TCGA-22-5492-01 2 88874755 88874756 TC AGA EIF2AK3 Frame_Shift_Ins p.E749Sfs*5 0.20 TCGA-22-5492-01 2 97875427 97875427 G A ANKRD36 Missense_Mutation p.R1092Q 0.04 tolerated_low_confidence(1) benign(0) TCGA-22-5492-01 3 108076898 108076898 G C HHLA2 Missense_Mutation p.S298T 0.20 tolerated(0.19) benign(0.288) TCGA-22-5492-01 3 108572698 108572698 C A TRAT1 Missense_Mutation p.R179S 0.18 deleterious(0.01) probably_damaging(0.915) TCGA-22-5492-01 3 113299545 113299545 C G SIDT1 Missense_Mutation p.Q218E 0.22 deleterious(0) probably_damaging(0.999) TCGA-22-5492-01 3 121206279 121206279 G C POLQ Missense_Mutation p.D1833E 0.20 deleterious(0) possibly_damaging(0.682) TCGA-22-5492-01 3 145924389 145924389 T A PLSCR4 Missense_Mutation p.Q93L 0.15 tolerated(0.19) benign(0.02) TCGA-22-5492-01 3 154857994 154857994 T C MME Silent p.P290P 0.07 TCGA-22-5492-01 3 167035342 167035342 G T ZBBX Missense_Mutation p.P343T 0.18 tolerated(0.4) benign(0.003) TCGA-22-5492-01 3 172080476 172080476 T C FNDC3B Missense_Mutation p.I950T 0.42 tolerated(0.06) benign(0.146) TCGA-22-5492-01 3 184043326 184043326 A G EIF4G1 Missense_Mutation p.K1014R 0.22 deleterious(0.04) benign(0.033) TCGA-22-5492-01 3 38739960 38739960 A C SCN10A Missense_Mutation p.L1584R 0.48 deleterious(0) probably_damaging(0.993) TCGA-22-5492-01 3 44803148 44803148 C A KIAA1143 5'UTR 0.21 TCGA-22-5492-01 3 52233237 52233237 G C ALAS1 Intron 0.14 TCGA-22-5492-01 3 88189354 88189354 G T ZNF654 Missense_Mutation p.Q298H 0.35 deleterious(0) probably_damaging(0.987) TCGA-22-5492-01 4 107252864 107252864 G C AIMP1 Missense_Mutation p.G167R 0.43 tolerated(0.16) possibly_damaging(0.642) TCGA-22-5492-01 4 13602759 13602759 G A BOD1L1 Missense_Mutation p.A1922V 0.29 possibly_damaging(0.521) TCGA-22-5492-01 4 166300542 166300542 C A CPE Missense_Mutation p.P57T 0.43 tolerated(0.43) benign(0.018) TCGA-22-5492-01 4 175896968 175896968 A T ADAM29 Missense_Mutation p.N98Y 0.27 deleterious(0) possibly_damaging(0.889) TCGA-22-5492-01 4 183714971 183714971 T A TENM3 Missense_Mutation p.F2382L 0.36 tolerated(0.07) possibly_damaging(0.483) TCGA-22-5492-01 4 186366608 186366608 A T CCDC110 3'UTR 0.24 TCGA-22-5492-01 4 187542483 187542483 C A FAT1 Missense_Mutation p.V1753F 0.22 probably_damaging(0.918) TCGA-22-5492-01 4 57897088 57897088 C G POLR2B Nonsense_Mutation p.Y1153* 0.15 TCGA-22-5492-01 4 68930480 68930480 C A TMPRSS11F Missense_Mutation p.C313F 0.06 deleterious(0) probably_damaging(0.999) TCGA-22-5492-01 4 74270121 74270121 C G ALB Missense_Mutation p.A26G 0.16 tolerated(0.06) benign(0.092) TCGA-22-5492-01 4 76817474 76817474 C - PPEF2 Frame_Shift_Del p.G2Efs*24 0.25 TCGA-22-5492-01 4 76943015 76943015 G A CXCL10 3'UTR 0.21 TCGA-22-5492-01 4 84227463 84227463 C G HPSE Missense_Mutation p.D367H 0.19 deleterious(0.02) probably_damaging(0.983) TCGA-22-5492-01 4 85638087 85638087 C A WDFY3 Missense_Mutation p.D2613Y 0.27 deleterious(0.02) possibly_damaging(0.735) TCGA-22-5492-01 4 87770377 87770377 C A SLC10A6 5'UTR 0.32 TCGA-22-5492-01 4 88904081 88904081 T G SPP1 3'UTR 0.27 TCGA-22-5492-01 4 89679910 89679910 C A FAM13A Missense_Mutation p.W574L 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-22-5492-01 4 94436380 94436380 C A GRID2 Missense_Mutation p.L671I 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-22-5492-01 4 99342542 99342542 A T RAP1GDS1 Silent p.S480S 0.11 TCGA-22-5492-01 5 112154688 112154688 C G APC Nonsense_Mutation p.S320* 0.42 TCGA-22-5492-01 5 1254487 1254487 C A TERT Missense_Mutation p.R1097S 0.13 deleterious(0) benign(0.206) TCGA-22-5492-01 5 13870880 13870880 A G DNAH5 Missense_Mutation p.I1277T 0.25 benign(0.152) TCGA-22-5492-01 5 141329130 141329130 T G PCDH12 Silent p.T999T 0.58 TCGA-22-5492-01 5 14693114 14693114 A T FAM105B Missense_Mutation p.H339L 0.17 deleterious(0) probably_damaging(1) TCGA-22-5492-01 5 178413911 178413911 C A GRM6 Missense_Mutation p.Q476H 0.56 tolerated(0.12) benign(0.236) TCGA-22-5492-01 5 19544051 19544051 G T CDH18 Silent p.T439T 0.15 TCGA-22-5492-01 5 38406999 38406999 T A EGFLAM Missense_Mutation p.S300T 0.13 tolerated_low_confidence(0.09) benign(0.014) TCGA-22-5492-01 5 41510524 41510524 A T PLCXD3 Splice_Site p.X35_splice 0.18 TCGA-22-5492-01 5 43543192 43543192 A G PAIP1 Silent p.Y216Y 0.19 TCGA-22-5492-01 5 45267348 45267348 G T HCN1 Nonsense_Mutation p.C542* 0.13 TCGA-22-5492-01 5 5235235 5235235 C T ADAMTS16 Silent p.A653A 0.16 TCGA-22-5492-01 5 61923060 61923060 T C IPO11 Missense_Mutation p.L988P 0.46 deleterious(0.04) possibly_damaging(0.736) TCGA-22-5492-01 5 912047 912047 T A TRIP13 Missense_Mutation p.I319N 0.15 deleterious(0) probably_damaging(0.926) TCGA-22-5492-01 6 129621881 129621881 C G LAMA2 Missense_Mutation p.A1013G 0.26 deleterious(0.01) benign(0.271) TCGA-22-5492-01 6 131225639 131225639 G T EPB41L2 Missense_Mutation p.P299T 0.57 deleterious(0) probably_damaging(0.988) TCGA-22-5492-01 6 138640890 138640890 T C KIAA1244 Missense_Mutation p.S1509P 0.38 tolerated(0.07) benign(0.425) TCGA-22-5492-01 6 139135688 139135688 C G ECT2L Missense_Mutation p.R43G 0.30 deleterious(0) probably_damaging(0.912) TCGA-22-5492-01 6 167587422 167587422 C T TCP10L2 Missense_Mutation p.A109V 0.23 tolerated(0.09) probably_damaging(0.997) TCGA-22-5492-01 6 26157147 26157147 A T HIST1H1E Nonsense_Mutation p.K177* 0.28 TCGA-22-5492-01 6 26507025 26507025 G T BTN1A1 Missense_Mutation p.R275I 0.25 tolerated(0.08) possibly_damaging(0.83) TCGA-22-5492-01 6 27879591 27879591 A G OR2B2 Silent p.C169C 0.28 TCGA-22-5492-01 6 28195519 28195519 C T ZSCAN9 Silent p.L158L 0.27 TCGA-22-5492-01 6 30672865 30672865 T C MDC1 Silent p.S1365S 0.31 TCGA-22-5492-01 6 37605156 37605156 C T MDGA1 Silent p.A952A 0.24 TCGA-22-5492-01 6 54216195 54216195 G T TINAG Missense_Mutation p.A376S 0.36 deleterious(0) possibly_damaging(0.796) TCGA-22-5492-01 7 100218425 100218425 C A TFR2 3'UTR 0.12 TCGA-22-5492-01 7 136848917 136848917 C A hsa-mir-490 Intron 0.31 TCGA-22-5492-01 7 139305195 139305195 G A HIPK2 Silent p.T578T 0.24 TCGA-22-5492-01 7 143657235 143657235 C A OR2F1 Missense_Mutation p.P58T 0.19 deleterious(0) probably_damaging(1) TCGA-22-5492-01 7 150905092 150905092 G A ABCF2 3'UTR 0.18 TCGA-22-5492-01 7 151135212 151135212 C A CRYGN Missense_Mutation p.G47V 0.34 deleterious(0) probably_damaging(0.978) TCGA-22-5492-01 7 31682869 31682869 A G CCDC129 Missense_Mutation p.T655A 0.44 tolerated(0.21) benign(0.384) TCGA-22-5492-01 7 35050131 35050131 A G DPY19L1 Missense_Mutation p.I165T 0.29 deleterious(0.02) benign(0.101) TCGA-22-5492-01 7 56066761 56066761 A T GBAS Missense_Mutation p.Q286L 0.32 deleterious(0) possibly_damaging(0.694) TCGA-22-5492-01 7 63538585 63538585 T C ZNF727 Silent p.H386H 0.27 TCGA-22-5492-01 7 73021342 73021342 T A MLXIPL Nonsense_Mutation p.K194* 0.35 TCGA-22-5492-01 7 81386580 81386580 T C HGF Missense_Mutation p.Y136C 0.19 deleterious(0) probably_damaging(1) TCGA-22-5492-01 7 86468464 86468464 C G GRM3 Missense_Mutation p.T545S 0.18 tolerated(0.11) probably_damaging(0.958) TCGA-22-5492-01 7 94052351 94052351 G T COL1A2 Missense_Mutation p.G829V 0.30 unknown(0) TCGA-22-5492-01 8 101146070 101146070 G A FBXO43 Missense_Mutation p.P696L 0.17 deleterious(0) probably_damaging(0.99) TCGA-22-5492-01 8 104898414 104898414 T C RIMS2 Silent p.D529D 0.24 TCGA-22-5492-01 8 118533160 118533160 C G MED30 Silent p.P15P 0.56 TCGA-22-5492-01 8 139160838 139160838 A T FAM135B Missense_Mutation p.Y1125N 0.57 deleterious(0) probably_damaging(0.999) TCGA-22-5492-01 8 1719295 1719295 C T CLN8 Silent p.S25S 0.42 TCGA-22-5492-01 8 52320767 52320767 G C PXDNL Silent p.A1139A 0.17 TCGA-22-5492-01 8 68179410 68179410 G T ARFGEF1 Silent p.A576A 0.24 TCGA-22-5492-01 8 69552748 69552748 T A C8orf34 Splice_Site p.X414_splice 0.57 TCGA-22-5492-01 8 75927109 75927109 G A CRISPLD1 Missense_Mutation p.S230N 0.46 tolerated(0.06) benign(0.027) TCGA-22-5492-01 8 76456059 76456060 AG - HNF4G Frame_Shift_Del p.E35Dfs*32 0.26 TCGA-22-5492-01 8 98943591 98943591 C T MATN2 Missense_Mutation p.R185W 0.39 deleterious(0) probably_damaging(1) TCGA-22-5492-01 9 107456872 107456872 T G OR13D1 Missense_Mutation p.L57R 0.28 tolerated(0.28) benign(0.009) TCGA-22-5492-01 9 113547908 113547908 C A MUSK Missense_Mutation p.P563H 0.20 deleterious(0.05) benign(0.111) TCGA-22-5492-01 9 113547909 113547909 C A MUSK Silent p.P563P 0.21 TCGA-22-5492-01 9 113547910 113547910 A T MUSK Nonsense_Mutation p.K564* 0.21 TCGA-22-5492-01 9 115805911 115805911 G T ZFP37 Silent p.A329A 0.29 TCGA-22-5492-01 9 139396757 139396757 C A NOTCH1 Missense_Mutation p.R1784L 0.43 deleterious(0) probably_damaging(0.91) TCGA-22-5492-01 9 21974695 21974696 - T CDKN2A Nonsense_Mutation p.Y44* 0.40 TCGA-22-5492-01 9 37495219 37495219 C T POLR1E Missense_Mutation p.P201S 0.34 deleterious(0) probably_damaging(1) TCGA-22-5492-01 9 8527348 8527348 T G PTPRD Missense_Mutation p.I183L 0.30 tolerated(0.78) benign(0.119) TCGA-22-5492-01 X 100530214 100530214 T C TAF7L Missense_Mutation p.E447G 0.25 deleterious(0) probably_damaging(0.98) TCGA-22-5492-01 X 100530223 100530223 T G TAF7L Missense_Mutation p.Q444P 0.25 deleterious(0.03) benign(0.247) TCGA-22-5492-01 X 102931102 102931102 C T MORF4L2 Missense_Mutation p.R285H 0.21 tolerated(0.07) benign(0.006) TCGA-22-5492-01 X 106083280 106083280 G A TBC1D8B Silent p.L452L 0.23 TCGA-22-5492-01 X 118604397 118604397 C - SLC25A5 Frame_Shift_Del p.T221Lfs*6 0.26 TCGA-22-5492-01 X 118986836 118986836 G A UPF3B Missense_Mutation p.P19L 0.24 deleterious(0.01) probably_damaging(0.991) TCGA-22-5492-01 X 129394398 129394398 G T ZNF280C Missense_Mutation p.P9Q 0.21 tolerated(0.07) benign(0.035) TCGA-22-5492-01 X 131526209 131526209 C A MBNL3 Missense_Mutation p.A166S 0.09 tolerated(0.72) benign(0.023) TCGA-22-5492-01 X 135958741 135958741 T A RBMX Silent p.P154P 0.22 TCGA-22-5492-01 X 146312250 146312250 G T MIR506 RNA 0.21 TCGA-22-5492-01 X 151092423 151092423 C A MAGEA4 Missense_Mutation p.P96Q 0.21 tolerated(0.08) possibly_damaging(0.734) TCGA-22-5492-01 X 151820229 151820229 T C GABRQ Missense_Mutation p.V381A 0.38 tolerated(0.36) benign(0.016) TCGA-22-5492-01 X 15270382 15270382 T A ASB9 Missense_Mutation p.R143W 0.24 deleterious(0) possibly_damaging(0.897) TCGA-22-5492-01 X 152845732 152845732 C A ATP2B3 Silent p.L1213L 0.33 TCGA-22-5492-01 X 153418503 153418503 A C OPN1LW Missense_Mutation p.K167T 0.19 tolerated(0.17) probably_damaging(0.976) TCGA-22-5492-01 X 154182312 154182312 C A F8 Missense_Mutation p.M586I 0.27 deleterious(0.02) probably_damaging(0.955) TCGA-22-5492-01 X 21627564 21627564 A T CNKSR2 Nonsense_Mutation p.K841* 0.25 TCGA-22-5492-01 X 23019932 23019932 G T DDX53 Silent p.L586L 0.19 TCGA-22-5492-01 X 23397917 23397917 C A PTCHD1 Nonsense_Mutation p.Y187* 0.28 TCGA-22-5492-01 X 2732514 2732514 C G XG 3'UTR 0.19 TCGA-22-5492-01 X 27766584 27766584 C A DCAF8L2 Nonsense_Mutation p.Y524* 0.27 TCGA-22-5492-01 X 37028238 37028238 G A FAM47C Silent p.E585E 0.27 TCGA-22-5492-01 X 37028815 37028815 C A FAM47C Missense_Mutation p.L778I 0.15 tolerated(0.12) benign(0.205) TCGA-22-5492-01 X 47271926 47271926 C A ZNF157 Missense_Mutation p.R152S 0.31 deleterious(0.03) benign(0.009) TCGA-22-5492-01 X 47478795 47478795 G T SYN1 Silent p.A111A 0.27 TCGA-22-5492-01 X 49855383 49855383 G T CLCN5 Nonsense_Mutation p.E734* 0.32 TCGA-22-5492-01 X 49958335 49958335 G T AKAP4 Missense_Mutation p.D343E 0.27 deleterious(0.02) possibly_damaging(0.625) TCGA-22-5492-01 X 50094328 50094328 C A CCNB3 Missense_Mutation p.S1350Y 0.28 tolerated(1) benign(0.063) TCGA-22-5492-01 X 53589800 53589800 T - HUWE1 Frame_Shift_Del p.N2399Tfs*6 0.25 TCGA-22-5492-01 X 64139902 64139902 A C ZC4H2 Intron 0.38 TCGA-22-5492-01 X 70469503 70469503 G A ZMYM3 Silent p.S426S 0.15 TCGA-22-5492-01 X 71708787 71708787 C A HDAC8 Nonsense_Mutation p.E245* 0.38 TCGA-22-5492-01 X 72433074 72433074 C A NAP1L2 Missense_Mutation p.G419W 0.15 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-22-5492-01 X 79999651 79999651 G C BRWD3 Missense_Mutation p.N231K 0.22 deleterious(0) possibly_damaging(0.904) TCGA-22-5492-01 X 91134108 91134108 A C PCDH11X Missense_Mutation p.N957H 0.28 tolerated(0.11) benign(0.082) TCGA-22-A5C4-01 10 102747029 102747029 C - MRPL43 Intron 0.11 TCGA-22-A5C4-01 10 108412206 108412206 G T SORCS1 Silent p.V803V 0.26 TCGA-22-A5C4-01 10 11531161 11531161 C G USP6NL Missense_Mutation p.E219Q 0.30 deleterious(0) probably_damaging(1) TCGA-22-A5C4-01 10 118117427 118117427 T A CCDC172 Silent p.P210P 0.60 TCGA-22-A5C4-01 10 12123540 12123540 C A DHTKD1 Missense_Mutation p.P75H 0.20 deleterious(0) probably_damaging(0.999) TCGA-22-A5C4-01 10 127698053 127698053 C T FANK1 3'UTR 0.52 TCGA-22-A5C4-01 10 127787008 127787008 C A ADAM12 Missense_Mutation p.D328Y 0.44 tolerated(0.43) possibly_damaging(0.718) TCGA-22-A5C4-01 10 16932394 16932394 C A CUBN Missense_Mutation p.G2911C 0.34 deleterious(0) probably_damaging(1) TCGA-22-A5C4-01 10 16981040 16981040 A T CUBN Missense_Mutation p.N1885K 0.24 deleterious(0.02) possibly_damaging(0.864) TCGA-22-A5C4-01 10 17840669 17840669 G T TMEM236 3'UTR 0.74 TCGA-22-A5C4-01 10 23287256 23287256 A G ARMC3 Missense_Mutation p.N452S 0.26 tolerated(0.17) benign(0.035) TCGA-22-A5C4-01 10 25465187 25465187 G - GPR158 Frame_Shift_Del p.W281Gfs*24 0.30 TCGA-22-A5C4-01 10 35818900 35818900 G T CCNY Splice_Site p.X134_splice 0.20 TCGA-22-A5C4-01 10 429999 429999 C A DIP2C Missense_Mutation p.R615L 0.40 deleterious(0) probably_damaging(0.998) TCGA-22-A5C4-01 10 54076477 54076477 T A DKK1 Nonsense_Mutation p.C237* 0.41 TCGA-22-A5C4-01 10 68526033 68526033 T A CTNNA3 Missense_Mutation p.R424W 0.46 deleterious(0) possibly_damaging(0.892) TCGA-22-A5C4-01 10 68686292 68686292 C A LRRTM3 5'UTR 0.38 TCGA-22-A5C4-01 10 69902745 69902745 C A MYPN Silent p.I317I 0.44 TCGA-22-A5C4-01 10 76789746 76789746 A G KAT6B Missense_Mutation p.T1722A 0.20 probably_damaging(0.986) TCGA-22-A5C4-01 10 84711266 84711266 T C NRG3 Missense_Mutation p.C366R 0.40 deleterious(0.05) probably_damaging(0.973) TCGA-22-A5C4-01 10 91404982 91404982 T A PANK1 Missense_Mutation p.E26D 0.24 tolerated_low_confidence(0.08) benign(0.029) TCGA-22-A5C4-01 10 98469526 98469526 C A PIK3AP1 Silent p.V76V 0.34 TCGA-22-A5C4-01 10 98762503 98762503 A C SLIT1 Missense_Mutation p.L1371R 0.37 tolerated(0.31) benign(0.043) TCGA-22-A5C4-01 10 99625489 99625489 G T GOLGA7B 3'UTR 0.40 TCGA-22-A5C4-01 11 103780380 103780380 T A PDGFD 3'UTR 0.44 TCGA-22-A5C4-01 11 105009765 105009765 T C CARD18 Silent p.S16S 0.44 TCGA-22-A5C4-01 11 10580650 10580650 T C LYVE1 3'UTR 0.23 TCGA-22-A5C4-01 11 113816743 113816743 G T HTR3B Nonsense_Mutation p.E404* 0.21 TCGA-22-A5C4-01 11 120186088 120186088 C G POU2F3 Missense_Mutation p.L365V 0.22 tolerated(0.08) probably_damaging(0.998) TCGA-22-A5C4-01 11 123847500 123847500 A T OR10S1 Missense_Mutation p.F300Y 0.38 deleterious(0) probably_damaging(0.992) TCGA-22-A5C4-01 11 13743361 13743361 G C FAR1 Missense_Mutation p.E404D 0.17 tolerated(1) benign(0.001) TCGA-22-A5C4-01 11 16068171 16068171 C T SOX6 Silent p.R504R 0.56 TCGA-22-A5C4-01 11 17531359 17531359 C T USH1C Silent p.P519P 0.62 TCGA-22-A5C4-01 11 33564732 33564732 G T KIAA1549L Missense_Mutation p.L244F 0.61 tolerated_low_confidence(0.86) benign(0.008) TCGA-22-A5C4-01 11 47753059 47753059 C T FNBP4 Silent p.E625E 0.29 TCGA-22-A5C4-01 11 48239242 48239242 T C OR4B1 Missense_Mutation p.I294T 0.10 tolerated(0.06) benign(0.002) TCGA-22-A5C4-01 11 48347323 48347323 G C OR4C3 Silent p.V277V 0.23 TCGA-22-A5C4-01 11 55135625 55135625 T A OR4A15 Missense_Mutation p.F89Y 0.48 deleterious_low_confidence(0.03) benign(0.298) TCGA-22-A5C4-01 11 55322412 55322412 G A OR4C15 Missense_Mutation p.M210I 0.36 tolerated_low_confidence(1) benign(0.011) TCGA-22-A5C4-01 11 57156781 57156781 G T PRG2 Missense_Mutation p.T23N 0.20 tolerated(0.08) probably_damaging(0.963) TCGA-22-A5C4-01 11 5841620 5841620 G A OR52N2 Missense_Mutation p.V19I 0.53 tolerated(1) benign(0.002) TCGA-22-A5C4-01 11 61511396 61511396 C T DAGLA Missense_Mutation p.P855L 0.16 deleterious_low_confidence(0.01) benign(0.054) TCGA-22-A5C4-01 11 65810948 65810948 C A GAL3ST3 Missense_Mutation p.R109L 0.35 tolerated(0.47) probably_damaging(0.926) TCGA-22-A5C4-01 11 66113670 66113670 C G B3GNT1 Silent p.L366L 0.36 TCGA-22-A5C4-01 11 73630040 73630040 C G PAAF1 Silent p.S327S 0.11 TCGA-22-A5C4-01 11 88323790 88323790 A G GRM5 Missense_Mutation p.W557R 0.29 deleterious(0) probably_damaging(0.954) TCGA-22-A5C4-01 11 88780564 88780564 C A GRM5 Missense_Mutation p.Q159H 0.28 deleterious(0) probably_damaging(0.999) TCGA-22-A5C4-01 11 94225911 94225911 C A MRE11A Intron 0.32 TCGA-22-A5C4-01 12 102558374 102558374 G T PARPBP Missense_Mutation p.M218I 0.21 deleterious(0.03) benign(0.276) TCGA-22-A5C4-01 12 107144548 107144548 C A RFX4 Missense_Mutation p.P647T 0.23 deleterious_low_confidence(0.01) benign(0.003) TCGA-22-A5C4-01 12 108641948 108641948 G T WSCD2 Missense_Mutation p.C509F 0.29 deleterious(0) probably_damaging(0.999) TCGA-22-A5C4-01 12 109577409 109577409 C G ACACB Missense_Mutation p.L67V 0.23 tolerated_low_confidence(0.67) benign(0.093) TCGA-22-A5C4-01 12 11061328 11061328 T C TAS2R13 Silent p.P190P 0.40 TCGA-22-A5C4-01 12 113722526 113722526 G T TPCN1 Missense_Mutation p.G540V 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-22-A5C4-01 12 123342707 123342707 G C HIP1R Missense_Mutation p.R625P 0.15 tolerated(0.09) benign(0.33) TCGA-22-A5C4-01 12 124413070 124413070 G A DNAH10 Missense_Mutation p.R3963H 0.17 probably_damaging(1) TCGA-22-A5C4-01 12 129559425 129559425 G C TMEM132D Silent p.T765T 0.21 TCGA-22-A5C4-01 12 130184487 130184487 G T TMEM132D Missense_Mutation p.P279H 0.36 tolerated(0.11) possibly_damaging(0.842) TCGA-22-A5C4-01 12 132426296 132426296 T C PUS1 Missense_Mutation p.L335P 0.11 deleterious(0) probably_damaging(1) TCGA-22-A5C4-01 12 33031966 33031966 C A PKP2 Missense_Mutation p.G75V 0.15 deleterious(0) probably_damaging(0.989) TCGA-22-A5C4-01 12 346396 346396 C T SLC6A13 Silent p.L208L 0.34 TCGA-22-A5C4-01 12 49427297 49427297 C A KMT2D Missense_Mutation p.A3731S 0.29 benign(0.048) TCGA-22-A5C4-01 12 49435257 49435257 C A KMT2D Missense_Mutation p.R2099L 0.34 probably_damaging(0.994) TCGA-22-A5C4-01 12 53453124 53453124 G A TENC1 Missense_Mutation p.E577K 0.20 tolerated(0.41) possibly_damaging(0.508) TCGA-22-A5C4-01 12 53512682 53512682 A G SOAT2 Missense_Mutation p.Y291C 0.26 tolerated(0.19) possibly_damaging(0.549) TCGA-22-A5C4-01 12 54801476 54801476 T A ITGA5 Missense_Mutation p.D288V 0.28 deleterious(0) probably_damaging(0.999) TCGA-22-A5C4-01 12 55758952 55758952 C T OR6C75 Nonsense_Mutation p.Q20* 0.40 TCGA-22-A5C4-01 12 56234960 56234960 G T MMP19 Silent p.A78A 0.36 TCGA-22-A5C4-01 12 57629233 57629233 G A NDUFA4L2 3'UTR 0.18 TCGA-22-A5C4-01 12 57629234 57629234 C T NDUFA4L2 3'UTR 0.18 TCGA-22-A5C4-01 12 66724973 66724974 - C HELB Frame_Shift_Ins p.R906Pfs*38 0.20 TCGA-22-A5C4-01 12 70824452 70824452 G C KCNMB4 3'UTR 0.53 TCGA-22-A5C4-01 12 70938418 70938418 G A PTPRB Missense_Mutation p.L1805F 0.03 deleterious(0.01) probably_damaging(1) TCGA-22-A5C4-01 12 72366363 72366363 C T TPH2 Missense_Mutation p.R225W 0.21 deleterious(0) probably_damaging(0.959) TCGA-22-A5C4-01 12 72866879 72866879 G A TRHDE Nonsense_Mutation p.W456* 0.34 TCGA-22-A5C4-01 12 72962380 72962380 T A TRHDE Missense_Mutation p.V647E 0.09 tolerated(0.65) benign(0.022) TCGA-22-A5C4-01 12 7653749 7653749 C G CD163 Missense_Mutation p.G148A 0.16 deleterious(0.04) benign(0.439) TCGA-22-A5C4-01 12 81102694 81102694 G T MYF6 Silent p.S228S 0.40 TCGA-22-A5C4-01 12 85449870 85449870 G T LRRIQ1 Missense_Mutation p.K433N 0.36 tolerated(0.08) benign(0.035) TCGA-22-A5C4-01 12 9070377 9070377 A T PHC1 Missense_Mutation p.Q35L 0.38 deleterious(0) probably_damaging(0.983) TCGA-22-A5C4-01 12 9354935 9354935 A C PZP Missense_Mutation p.F154V 0.46 deleterious(0) probably_damaging(0.928) TCGA-22-A5C4-01 13 108518789 108518789 G C FAM155A Silent p.L52L 0.37 TCGA-22-A5C4-01 13 95715057 95715057 A G ABCC4 Silent p.F1089F 0.41 TCGA-22-A5C4-01 14 100380996 100380996 G T EML1 Missense_Mutation p.A591S 0.40 tolerated(1) benign(0.047) TCGA-22-A5C4-01 14 107283218 107283218 C G IGHV7-81 Missense_Mutation p.W3C 0.08 tolerated(0.05) benign(0.018) TCGA-22-A5C4-01 14 20403904 20403904 T G OR4K1 Missense_Mutation p.F27V 0.10 deleterious(0.01) benign(0.06) TCGA-22-A5C4-01 14 20483212 20483212 G T OR4K14 Silent p.V47V 0.50 TCGA-22-A5C4-01 14 23887429 23887429 C A MYH7 Nonsense_Mutation p.E1387* 0.37 TCGA-22-A5C4-01 14 24520129 24520129 C A LRRC16B 5'Flank 0.25 TCGA-22-A5C4-01 14 25326291 25326291 C T STXBP6 Missense_Mutation p.R76Q 0.49 tolerated(0.1) benign(0.04) TCGA-22-A5C4-01 14 29237776 29237776 A - FOXG1 Frame_Shift_Del p.S431Afs*4 0.33 TCGA-22-A5C4-01 14 42373486 42373486 C T LRFN5 3'UTR 0.36 TCGA-22-A5C4-01 14 44974480 44974480 C G FSCB Missense_Mutation p.E571Q 0.50 deleterious(0.01) possibly_damaging(0.661) TCGA-22-A5C4-01 14 45481254 45481254 A G FAM179B Missense_Mutation p.I1072V 0.33 tolerated(1) benign(0.001) TCGA-22-A5C4-01 14 50845054 50845054 C T CDKL1 Intron 0.09 TCGA-22-A5C4-01 14 52527045 52527045 A T NID2 Silent p.S188S 0.31 TCGA-22-A5C4-01 14 61263021 61263021 G T MNAT1 Missense_Mutation p.R59M 0.42 deleterious(0) probably_damaging(0.954) TCGA-22-A5C4-01 14 73181174 73181174 G T DPF3 Missense_Mutation p.D187E 0.35 tolerated(0.28) benign(0.014) TCGA-22-A5C4-01 14 77901724 77901724 G - VIPAS39 Frame_Shift_Del p.H309Ifs*2 0.29 TCGA-22-A5C4-01 14 88652277 88652277 G T KCNK10 Missense_Mutation p.R412S 0.19 tolerated_low_confidence(0.1) benign(0.14) TCGA-22-A5C4-01 14 88652378 88652378 C T KCNK10 Missense_Mutation p.R378H 0.31 deleterious(0) probably_damaging(0.939) TCGA-22-A5C4-01 15 33925242 33925242 C A RYR3 Missense_Mutation p.A987E 0.34 probably_damaging(1) TCGA-22-A5C4-01 15 50544674 50544674 G T HDC Missense_Mutation p.P332T 0.18 deleterious(0) probably_damaging(1) TCGA-22-A5C4-01 15 50733578 50733578 C A USP8 Missense_Mutation p.T46K 0.48 tolerated(0.24) benign(0.002) TCGA-22-A5C4-01 15 51795013 51795013 C A DMXL2 Silent p.T994T 0.45 TCGA-22-A5C4-01 15 52353541 52353541 G A MAPK6 Missense_Mutation p.R304Q 0.45 deleterious(0.04) benign(0.039) TCGA-22-A5C4-01 15 68504069 68504069 G - CLN6 Frame_Shift_Del p.H144Tfs*19 0.17 TCGA-22-A5C4-01 15 69740162 69740162 A G KIF23 3'UTR 0.56 TCGA-22-A5C4-01 15 73843462 73843462 T A C15orf60 Missense_Mutation p.S173T 0.35 tolerated(0.54) benign(0.012) TCGA-22-A5C4-01 15 91489907 91489908 CC - UNC45A Frame_Shift_Del p.L422Afs*5 0.26 TCGA-22-A5C4-01 16 20435283 20435283 T A ACSM5 Silent p.T271T 0.13 TCGA-22-A5C4-01 16 2156264 2156264 C A PKD1 Missense_Mutation p.A2511S 0.30 benign(0.062) TCGA-22-A5C4-01 16 24573144 24573144 G T RBBP6 Splice_Site p.X318_splice 0.24 TCGA-22-A5C4-01 16 24573145 24573145 G T RBBP6 Missense_Mutation p.A318S 0.24 deleterious_low_confidence(0.03) possibly_damaging(0.739) TCGA-22-A5C4-01 16 28507475 28507475 G A APOBR Silent p.E371E 0.45 TCGA-22-A5C4-01 16 28841994 28841994 C G ATXN2L Missense_Mutation p.R365G 0.20 deleterious(0.04) possibly_damaging(0.875) TCGA-22-A5C4-01 16 29825686 29825686 C A PRRT2 Missense_Mutation p.D304E 0.25 tolerated(0.11) probably_damaging(1) TCGA-22-A5C4-01 16 29872486 29872486 C T CDIPT Silent p.T91T 0.28 TCGA-22-A5C4-01 16 51173372 51173372 C A SALL1 Nonsense_Mutation p.E921* 0.17 TCGA-22-A5C4-01 16 56928450 56928450 C G SLC12A3 Silent p.T852T 0.35 TCGA-22-A5C4-01 16 61687601 61687601 G C CDH8 Missense_Mutation p.Q771E 0.46 tolerated(0.16) probably_damaging(0.973) TCGA-22-A5C4-01 16 68405871 68405871 C - SMPD3 Frame_Shift_Del p.V72Wfs*232 0.29 TCGA-22-A5C4-01 16 69905795 69905795 G A WWP2 Missense_Mutation p.V222I 0.29 tolerated(0.47) benign(0) TCGA-22-A5C4-01 16 76587177 76587177 T A CNTNAP4 Intron 0.62 TCGA-22-A5C4-01 16 81973601 81973601 G A PLCG2 Missense_Mutation p.D1140N 0.19 deleterious(0) probably_damaging(1) TCGA-22-A5C4-01 16 84695437 84695437 G A KLHL36 Missense_Mutation p.E517K 0.11 deleterious(0) probably_damaging(0.957) TCGA-22-A5C4-01 16 88765396 88765396 T A RNF166 Missense_Mutation p.S175C 0.27 deleterious(0.04) possibly_damaging(0.907) TCGA-22-A5C4-01 17 10426949 10426949 T A MYH2 Missense_Mutation p.Q1779L 0.48 deleterious(0) probably_damaging(0.998) TCGA-22-A5C4-01 17 18088110 18088110 G T ALKBH5 Missense_Mutation p.G185C 0.53 deleterious(0) probably_damaging(0.994) TCGA-22-A5C4-01 17 25758342 25758342 C A TBC1D3P5 RNA 0.19 TCGA-22-A5C4-01 17 26688284 26688284 C T TMEM199 3'UTR 0.46 TCGA-22-A5C4-01 17 26941879 26941879 C T KIAA0100 3'UTR 0.50 TCGA-22-A5C4-01 17 33288785 33288785 A C ZNF830 Missense_Mutation p.Q67P 0.23 tolerated(0.53) benign(0.006) TCGA-22-A5C4-01 17 37840941 37840941 T C PGAP3 Missense_Mutation p.N114S 0.20 deleterious(0) probably_damaging(1) TCGA-22-A5C4-01 17 38244665 38244665 C T THRA Silent p.A298A 0.52 TCGA-22-A5C4-01 17 48650047 48650047 C T CACNA1G Silent p.G293G 0.19 TCGA-22-A5C4-01 17 51901055 51901055 C A KIF2B Silent p.R221R 0.12 TCGA-22-A5C4-01 17 61987780 61987780 G A CSHL1 Silent p.S102S 0.41 TCGA-22-A5C4-01 17 64800208 64800208 G T PRKCA 3'UTR 0.21 TCGA-22-A5C4-01 17 74472943 74472943 G A RHBDF2 Nonsense_Mutation p.Q391* 0.17 TCGA-22-A5C4-01 17 74472944 74472944 C A RHBDF2 Silent p.V390V 0.19 TCGA-22-A5C4-01 17 7578416 7578416 C - TP53 Frame_Shift_Del p.V172Lfs*2 0.36 TCGA-22-A5C4-01 17 80038093 80038093 G A FASN Missense_Mutation p.P2357S 0.42 tolerated(0.4) benign(0.01) TCGA-22-A5C4-01 17 80042508 80042508 G A FASN Missense_Mutation p.S1550L 0.52 deleterious(0) benign(0.11) TCGA-22-A5C4-01 17 8161463 8161463 G A PFAS Missense_Mutation p.G428R 0.39 deleterious(0) probably_damaging(0.988) TCGA-22-A5C4-01 18 59158027 59158027 G T CDH20 Missense_Mutation p.G81C 0.34 deleterious(0) probably_damaging(0.997) TCGA-22-A5C4-01 18 72345622 72345622 G T ZNF407 Missense_Mutation p.V883L 0.25 tolerated(0.2) possibly_damaging(0.85) TCGA-22-A5C4-01 18 908276 908276 C A ADCYAP1 Missense_Mutation p.H85N 0.62 tolerated(0.09) benign(0.006) TCGA-22-A5C4-01 19 10071457 10071457 G A COL5A3 Missense_Mutation p.A1654V 0.26 unknown(0) TCGA-22-A5C4-01 19 14044694 14044694 A G PODNL1 Missense_Mutation p.F262S 0.46 deleterious(0) probably_damaging(0.991) TCGA-22-A5C4-01 19 18888200 18888200 C T CRTC1 3'UTR 0.19 TCGA-22-A5C4-01 19 21476839 21476839 C T ZNF708 Missense_Mutation p.C310Y 0.17 deleterious(0.01) possibly_damaging(0.905) TCGA-22-A5C4-01 19 2151243 2151243 C T AP3D1 Missense_Mutation p.D31N 0.30 tolerated(1) benign(0.016) TCGA-22-A5C4-01 19 22942303 22942303 A T ZNF99 Nonsense_Mutation p.C136* 0.32 TCGA-22-A5C4-01 19 23544047 23544047 T G ZNF91 Missense_Mutation p.E578D 0.19 tolerated(0.07) possibly_damaging(0.868) TCGA-22-A5C4-01 19 30477257 30477257 G - URI1 Frame_Shift_Del p.D102Tfs*13 0.24 TCGA-22-A5C4-01 19 35550793 35550793 C T HPN Silent p.S102S 0.27 TCGA-22-A5C4-01 19 36004405 36004405 G A DMKN 5'UTR 0.33 TCGA-22-A5C4-01 19 37118234 37118234 C A ZNF382 Missense_Mutation p.L479I 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-22-A5C4-01 19 37678131 37678131 T A ZNF585B Missense_Mutation p.D103V 0.27 tolerated(0.07) benign(0.005) TCGA-22-A5C4-01 19 38990299 38990299 A G RYR1 Missense_Mutation p.N2351S 0.27 benign(0.063) TCGA-22-A5C4-01 19 42873759 42873759 T C MEGF8 Missense_Mutation p.C2173R 0.34 deleterious(0) probably_damaging(1) TCGA-22-A5C4-01 19 46133306 46133306 T C EML2 Splice_Site p.X372_splice 0.39 TCGA-22-A5C4-01 19 49548305 49548305 C G CGB5 Missense_Mutation p.F84L 0.27 deleterious(0.02) probably_damaging(0.997) TCGA-22-A5C4-01 19 50385571 50385571 C T TBC1D17 Silent p.L238L 0.32 TCGA-22-A5C4-01 19 51728409 51728409 C T CD33 Missense_Mutation p.A12V 0.22 tolerated(0.07) benign(0.41) TCGA-22-A5C4-01 19 52400148 52400148 G A ZNF649 Silent p.Y33Y 0.32 TCGA-22-A5C4-01 19 52868949 52868949 A G ZNF610 Splice_Site p.X107_splice 0.31 TCGA-22-A5C4-01 19 53056978 53056978 A C ZNF808 Missense_Mutation p.H270P 0.29 deleterious(0.05) possibly_damaging(0.659) TCGA-22-A5C4-01 19 53770384 53770384 G T VN1R4 Missense_Mutation p.L179M 0.25 deleterious(0.03) possibly_damaging(0.891) TCGA-22-A5C4-01 19 55316263 55316263 C A KIR2DL4 Missense_Mutation p.P31H 0.27 deleterious(0) probably_damaging(0.999) TCGA-22-A5C4-01 19 55605748 55605748 A - PPP1R12C Frame_Shift_Del p.S550Pfs*14 0.10 TCGA-22-A5C4-01 19 56220089 56220089 C T NLRP9 3'UTR 0.55 TCGA-22-A5C4-01 19 57723919 57723920 - CGTA ZNF264 Frame_Shift_Ins p.E487Rfs*21 0.39 TCGA-22-A5C4-01 19 58238766 58238766 G T ZNF671 Missense_Mutation p.S44Y 0.37 tolerated(0.1) benign(0.264) TCGA-22-A5C4-01 19 6418731 6418731 C G KHSRP Missense_Mutation p.E254D 0.20 tolerated(0.12) possibly_damaging(0.642) TCGA-22-A5C4-01 19 7122934 7122934 C A INSR Nonsense_Mutation p.G1109* 0.18 TCGA-22-A5C4-01 19 9077655 9077655 G T MUC16 Missense_Mutation p.T3264K 0.25 unknown(0) TCGA-22-A5C4-01 19 9086024 9086024 C - MUC16 Frame_Shift_Del p.A1931Pfs*2 0.17 TCGA-22-A5C4-01 19 9324722 9324722 C A OR7D4 Silent p.V264V 0.20 TCGA-22-A5C4-01 1 10356724 10356724 G T KIF1B Splice_Site p.X575_splice 0.53 TCGA-22-A5C4-01 1 107691382 107691382 A T NTNG1 Missense_Mutation p.D56V 0.14 deleterious(0.02) probably_damaging(1) TCGA-22-A5C4-01 1 108507487 108507487 T C VAV3 Missense_Mutation p.E2G 0.63 deleterious(0) probably_damaging(0.999) TCGA-22-A5C4-01 1 109268465 109268465 T C FNDC7 Missense_Mutation p.V317A 0.67 tolerated(0.06) probably_damaging(0.913) TCGA-22-A5C4-01 1 109377580 109377580 G T AKNAD1 Missense_Mutation p.N545K 0.69 tolerated(0.38) benign(0) TCGA-22-A5C4-01 1 11313973 11313973 T C MTOR Missense_Mutation p.M255V 0.60 tolerated(0.79) benign(0.002) TCGA-22-A5C4-01 1 1249263 1249263 G A CPSF3L Missense_Mutation p.T275M 0.05 tolerated(0.09) benign(0.027) TCGA-22-A5C4-01 1 12569100 12569100 G T VPS13D 3'UTR 0.14 TCGA-22-A5C4-01 1 12952870 12952870 C A PRAMEF10 Silent p.R434R 0.47 TCGA-22-A5C4-01 1 142713154 142713154 C A RP11-417J8.6 RNA 0.19 TCGA-22-A5C4-01 1 158580997 158580997 C A SPTA1 3'UTR 0.16 TCGA-22-A5C4-01 1 159166750 159166750 G T CADM3 Silent p.L318L 0.21 TCGA-22-A5C4-01 1 159842868 159842868 C T CCDC19 Silent p.Q481Q 0.15 TCGA-22-A5C4-01 1 161643255 161643255 C T FCGR2B Intron 0.15 TCGA-22-A5C4-01 1 16558419 16558419 A T RSG1 3'UTR 0.12 TCGA-22-A5C4-01 1 167023438 167023438 C A GPA33 3'UTR 0.22 TCGA-22-A5C4-01 1 173552642 173552642 T C SLC9C2 Intron 0.13 TCGA-22-A5C4-01 1 175113590 175113590 C G TNN Silent p.L1221L 0.42 TCGA-22-A5C4-01 1 17634709 17634709 A G PADI4 5'UTR 0.60 TCGA-22-A5C4-01 1 183604846 183604846 G A ARPC5 5'UTR 0.54 TCGA-22-A5C4-01 1 190068015 190068015 G A BRINP3 Silent p.V478V 0.09 TCGA-22-A5C4-01 1 19062146 19062146 C A PAX7 Missense_Mutation p.N392K 0.52 deleterious_low_confidence(0) benign(0.271) TCGA-22-A5C4-01 1 19062147 19062147 C A PAX7 Missense_Mutation p.P393T 0.52 deleterious_low_confidence(0.02) possibly_damaging(0.589) TCGA-22-A5C4-01 1 197411377 197411377 G T CRB1 Missense_Mutation p.Q1320H 0.12 tolerated(0.5) benign(0.022) TCGA-22-A5C4-01 1 198288679 198288679 C T NEK7 3'UTR 0.46 TCGA-22-A5C4-01 1 198703517 198703517 T G PTPRC Missense_Mutation p.V747G 0.16 deleterious(0) probably_damaging(0.998) TCGA-22-A5C4-01 1 203138443 203138443 C A MYBPH Missense_Mutation p.D390Y 0.46 deleterious(0) probably_damaging(0.99) TCGA-22-A5C4-01 1 203143636 203143636 G T MYBPH Missense_Mutation p.R144S 0.64 deleterious(0) probably_damaging(0.999) TCGA-22-A5C4-01 1 205290780 205290780 C A NUAK2 5'UTR 0.45 TCGA-22-A5C4-01 1 207111079 207111079 C T PIGR Missense_Mutation p.D136N 0.61 tolerated(0.68) benign(0.023) TCGA-22-A5C4-01 1 207741205 207741205 G T CR1 Missense_Mutation p.G1330V 0.09 deleterious(0.03) probably_damaging(0.991) TCGA-22-A5C4-01 1 215987239 215987239 C G USH2A Missense_Mutation p.C3193S 0.08 probably_damaging(1) TCGA-22-A5C4-01 1 216017819 216017819 A T USH2A Silent p.P3025P 0.17 TCGA-22-A5C4-01 1 220089210 220089210 C A SLC30A10 Missense_Mutation p.A347S 0.49 deleterious(0) probably_damaging(0.966) TCGA-22-A5C4-01 1 22304895 22304895 C A CELA3B Missense_Mutation p.S26Y 0.26 tolerated(0.06) benign(0.049) TCGA-22-A5C4-01 1 224581670 224581670 G A WDR26 Missense_Mutation p.A607V 0.20 tolerated(0.06) benign(0.26) TCGA-22-A5C4-01 1 228346821 228346821 G C GJC2 3'UTR 0.12 TCGA-22-A5C4-01 1 228362638 228362638 G T IBA57 Missense_Mutation p.W196L 0.56 deleterious(0.01) benign(0.173) TCGA-22-A5C4-01 1 228596278 228596278 C T TRIM17 Nonsense_Mutation p.W353* 0.14 TCGA-22-A5C4-01 1 236757412 236757412 C T HEATR1 Missense_Mutation p.E365K 0.47 tolerated(0.06) benign(0.021) TCGA-22-A5C4-01 1 240256746 240256746 G C FMN2 Missense_Mutation p.R446P 0.13 unknown(0) TCGA-22-A5C4-01 1 247200650 247200650 T C ZNF670 3'UTR 0.55 TCGA-22-A5C4-01 1 247694861 247694861 G A OR2C3 Missense_Mutation p.A318V 0.58 tolerated_low_confidence(0.19) benign(0.092) TCGA-22-A5C4-01 1 248129121 248129121 C - OR2AK2 Frame_Shift_Del p.A163Dfs*54 0.32 TCGA-22-A5C4-01 1 248202213 248202213 G T OR2L2 Missense_Mutation p.C215F 0.52 tolerated(0.11) benign(0.008) TCGA-22-A5C4-01 1 26517205 26517205 G - CATSPER4 Frame_Shift_Del p.F31Lfs*5 0.40 TCGA-22-A5C4-01 1 31840271 31840271 A C FABP3 Missense_Mutation p.V106G 0.28 tolerated(0.3) possibly_damaging(0.869) TCGA-22-A5C4-01 1 3334558 3334558 G - PRDM16 Frame_Shift_Del p.C953Sfs*18 0.08 TCGA-22-A5C4-01 1 36886110 36886110 C A OSCP1 Missense_Mutation p.R309L 0.27 deleterious(0) probably_damaging(0.989) TCGA-22-A5C4-01 1 53736953 53736953 A G LRP8 Missense_Mutation p.F358L 0.63 deleterious(0.03) possibly_damaging(0.758) TCGA-22-A5C4-01 1 54476012 54476012 C A LDLRAD1 Missense_Mutation p.D138Y 0.72 deleterious(0) probably_damaging(0.994) TCGA-22-A5C4-01 1 55078170 55078170 G C FAM151A Missense_Mutation p.S263R 0.65 tolerated(0.27) benign(0.038) TCGA-22-A5C4-01 1 55548965 55548965 C A USP24 Missense_Mutation p.A2319S 0.72 tolerated(0.45) benign(0.001) TCGA-22-A5C4-01 1 76342678 76342678 G T MSH4 Missense_Mutation p.D455Y 0.56 deleterious(0) probably_damaging(0.972) TCGA-22-A5C4-01 1 76878020 76878020 C A ST6GALNAC3 Missense_Mutation p.P181T 0.62 probably_damaging(0.932) TCGA-22-A5C4-01 1 89473527 89473527 G T GBP3 Silent p.A556A 0.63 TCGA-22-A5C4-01 1 9164620 9164620 C A GPR157 Missense_Mutation p.R289L 0.16 deleterious(0) probably_damaging(0.948) TCGA-22-A5C4-01 20 210274 210274 C A DEFB129 Silent p.I138I 0.58 TCGA-22-A5C4-01 20 2776269 2776269 C A CPXM1 Missense_Mutation p.A566S 0.54 deleterious(0) probably_damaging(0.976) TCGA-22-A5C4-01 20 29632701 29632701 G T FRG1B Missense_Mutation p.L172F 0.04 tolerated(0.32) benign(0.232) TCGA-22-A5C4-01 20 31572922 31572922 G A SUN5 Nonsense_Mutation p.Q323* 0.14 TCGA-22-A5C4-01 20 31583438 31583438 G A SUN5 Missense_Mutation p.A174V 0.09 tolerated(0.08) possibly_damaging(0.571) TCGA-22-A5C4-01 20 33578063 33578063 G C MYH7B Missense_Mutation p.E685Q 0.15 benign(0.029) TCGA-22-A5C4-01 20 33578615 33578615 G C MYH7B Missense_Mutation p.E726D 0.14 benign(0.017) TCGA-22-A5C4-01 20 33578871 33578871 G A MYH7B Silent p.R752R 0.12 TCGA-22-A5C4-01 20 33603931 33603931 C G TRPC4AP Missense_Mutation p.M410I 0.44 tolerated(0.56) benign(0.194) TCGA-22-A5C4-01 20 34025226 34025226 C T GDF5 Silent p.P161P 0.09 TCGA-22-A5C4-01 20 34065768 34065768 G A CEP250 Missense_Mutation p.D646N 0.56 possibly_damaging(0.577) TCGA-22-A5C4-01 20 3673414 3673414 G A SIGLEC1 Missense_Mutation p.R1262W 0.07 tolerated(0.11) probably_damaging(0.993) TCGA-22-A5C4-01 20 44006195 44006195 C T TP53TG5 Missense_Mutation p.R36Q 0.34 tolerated(0.17) benign(0.427) TCGA-22-A5C4-01 20 50776748 50776751 GAGT - ZFP64 Frame_Shift_Del p.H225Rfs*49 0.12 TCGA-22-A5C4-01 20 51870105 51870105 C T TSHZ2 Silent p.S36S 0.44 TCGA-22-A5C4-01 20 56179733 56179733 G T ZBP1 Missense_Mutation p.L396M 0.35 tolerated(0.07) possibly_damaging(0.86) TCGA-22-A5C4-01 20 62046361 62046361 C A KCNQ2 Nonsense_Mutation p.E474* 0.41 TCGA-22-A5C4-01 21 31914130 31914130 T C KRTAP19-6 Missense_Mutation p.Y8C 0.21 deleterious_low_confidence(0) unknown(0) TCGA-22-A5C4-01 21 32410494 32410494 G A KRTAP19-8 3'UTR 0.50 TCGA-22-A5C4-01 21 32624381 32624381 C A TIAM1 Missense_Mutation p.R363L 0.40 tolerated(0.34) benign(0.147) TCGA-22-A5C4-01 21 40883702 40883702 G T SH3BGR Nonstop_Mutation p.*240Yext*49 0.61 TCGA-22-A5C4-01 21 40883703 40883703 G T SH3BGR 3'UTR 0.61 TCGA-22-A5C4-01 21 41385213 41385213 C T DSCAM Silent p.L1929L 0.21 TCGA-22-A5C4-01 21 43805594 43805594 G A TMPRSS3 Missense_Mutation p.R166W 0.46 deleterious(0.01) possibly_damaging(0.883) TCGA-22-A5C4-01 21 47581436 47581436 T G SPATC1L Missense_Mutation p.N294H 0.22 tolerated(0.08) benign(0.015) TCGA-22-A5C4-01 22 29881827 29881827 C G NEFH Missense_Mutation p.A400G 0.40 deleterious(0.01) unknown(0) TCGA-22-A5C4-01 22 32616984 32616984 C T SLC5A4 Missense_Mutation p.R564Q 0.23 deleterious(0.01) possibly_damaging(0.783) TCGA-22-A5C4-01 22 38511538 38511538 C A PLA2G6 Missense_Mutation p.R677L 0.45 tolerated(0.49) benign(0.016) TCGA-22-A5C4-01 22 42606230 42606230 C A TCF20 Silent p.V1694V 0.36 TCGA-22-A5C4-01 22 50728038 50728038 T A PLXNB2 Missense_Mutation p.N326Y 0.31 tolerated(0.21) benign(0.023) TCGA-22-A5C4-01 2 113943707 113943707 T C PSD4 Silent p.S501S 0.20 TCGA-22-A5C4-01 2 11802161 11802161 T C NTSR2 Missense_Mutation p.Q277R 0.12 tolerated(0.21) benign(0.015) TCGA-22-A5C4-01 2 120125461 120125461 G C DBI Intron 0.16 TCGA-22-A5C4-01 2 121050874 121050874 A G RALB 3'UTR 0.59 TCGA-22-A5C4-01 2 128380803 128380803 C A MYO7B Silent p.P1198P 0.11 TCGA-22-A5C4-01 2 128389208 128389208 G T MYO7B Missense_Mutation p.R1684L 0.49 deleterious(0) probably_damaging(0.946) TCGA-22-A5C4-01 2 128480548 128480548 C T WDR33 Missense_Mutation p.M454I 0.58 tolerated(0.05) unknown(0) TCGA-22-A5C4-01 2 138414675 138414675 G A THSD7B Nonsense_Mutation p.W1443* 0.23 TCGA-22-A5C4-01 2 152236105 152236105 C T TNFAIP6 3'UTR 0.22 TCGA-22-A5C4-01 2 152507210 152507210 C T NEB Missense_Mutation p.A2369T 0.21 probably_damaging(1) TCGA-22-A5C4-01 2 162849893 162849893 C A DPP4 Missense_Mutation p.W734L 0.22 tolerated(0.08) possibly_damaging(0.907) TCGA-22-A5C4-01 2 163029667 163029667 G A FAP Missense_Mutation p.T700I 0.12 deleterious(0) probably_damaging(1) TCGA-22-A5C4-01 2 166245943 166245943 G A SCN2A Missense_Mutation p.R1876Q 0.10 deleterious(0) probably_damaging(0.998) TCGA-22-A5C4-01 2 170361365 170361365 G T BBS5 3'UTR 0.48 TCGA-22-A5C4-01 2 171902860 171902860 C A TLK1 Missense_Mutation p.W331C 0.22 deleterious(0.03) benign(0.004) TCGA-22-A5C4-01 2 179196314 179196320 TTCAAAG - OSBPL6 Frame_Shift_Del p.Y118* 0.16 TCGA-22-A5C4-01 2 179486437 179486437 G A TTN Silent p.A15038A 0.30 TCGA-22-A5C4-01 2 179577118 179577118 C T TTN Silent p.E9177E 0.20 TCGA-22-A5C4-01 2 179605495 179605495 T C TTN Silent p.V4155V 0.31 TCGA-22-A5C4-01 2 179612945 179612945 T C TTN Intron 0.23 TCGA-22-A5C4-01 2 185800739 185800739 G A ZNF804A Missense_Mutation p.G206R 0.45 deleterious(0.02) probably_damaging(0.999) TCGA-22-A5C4-01 2 198950106 198950106 G A PLCL1 Missense_Mutation p.R622H 0.18 deleterious(0) probably_damaging(0.993) TCGA-22-A5C4-01 2 202611357 202611357 T C ALS2 Missense_Mutation p.T644A 0.38 tolerated(0.82) benign(0) TCGA-22-A5C4-01 2 209104673 209104673 G C IDH1 Missense_Mutation p.T302R 0.22 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-22-A5C4-01 2 211515135 211515135 C G CPS1 Missense_Mutation p.F1157L 0.22 deleterious(0.05) probably_damaging(0.962) TCGA-22-A5C4-01 2 220089452 220089452 C T ATG9A Missense_Mutation p.R214H 0.27 deleterious(0) probably_damaging(0.991) TCGA-22-A5C4-01 2 238243426 238243426 G T COL6A3 Silent p.V3024V 0.40 TCGA-22-A5C4-01 2 27479380 27479380 G - SLC30A3 Frame_Shift_Del p.R298Afs*167 0.36 TCGA-22-A5C4-01 2 27665739 27665739 G A KRTCAP3 Missense_Mutation p.A82T 0.10 tolerated(0.28) benign(0.063) TCGA-22-A5C4-01 2 30974117 30974117 C A CAPN13 Missense_Mutation p.G363V 0.15 tolerated(0.09) possibly_damaging(0.732) TCGA-22-A5C4-01 2 36739445 36739445 G A CRIM1 Missense_Mutation p.R563H 0.19 deleterious(0) probably_damaging(0.996) TCGA-22-A5C4-01 2 39075532 39075532 C A DHX57 Silent p.L681L 0.14 TCGA-22-A5C4-01 2 44102320 44102320 C A ABCG8 Silent p.I508I 0.16 TCGA-22-A5C4-01 2 49191025 49191025 G A FSHR Missense_Mutation p.S312F 0.50 tolerated(0.57) benign(0.077) TCGA-22-A5C4-01 2 74757892 74757892 G T HTRA2 Missense_Mutation p.V219L 0.50 tolerated(0.13) benign(0.057) TCGA-22-A5C4-01 2 89417261 89417261 C G IGKV1-17 Missense_Mutation p.W16C 0.43 tolerated(0.08) benign(0.007) TCGA-22-A5C4-01 2 89975745 89975745 G T IGKV2D-30 Missense_Mutation p.W14C 0.26 tolerated(0.05) benign(0.007) TCGA-22-A5C4-01 2 89976414 89976414 T A IGKV2D-30 Missense_Mutation p.D95E 0.13 deleterious(0.03) benign(0.033) TCGA-22-A5C4-01 3 100364805 100364805 C A GPR128 Nonsense_Mutation p.C321* 0.42 TCGA-22-A5C4-01 3 119155734 119155734 G A TMEM39A Missense_Mutation p.P339L 0.39 deleterious(0) probably_damaging(0.999) TCGA-22-A5C4-01 3 119528984 119528984 C G NR1I2 Missense_Mutation p.R131G 0.47 deleterious(0.01) probably_damaging(1) TCGA-22-A5C4-01 3 120424847 120424847 C A RABL3 Missense_Mutation p.G128V 0.40 tolerated(0.11) probably_damaging(0.991) TCGA-22-A5C4-01 3 121342058 121342058 C A FBXO40 Silent p.A594A 0.50 TCGA-22-A5C4-01 3 123005576 123005576 C T ADCY5 Missense_Mutation p.V1205M 0.28 deleterious(0) probably_damaging(1) TCGA-22-A5C4-01 3 132226120 132226120 A T DNAJC13 Missense_Mutation p.S1680C 0.36 deleterious(0) possibly_damaging(0.713) TCGA-22-A5C4-01 3 138433505 138433505 T A PIK3CB Silent p.V369V 0.22 TCGA-22-A5C4-01 3 146309610 146309610 G C PLSCR5 Missense_Mutation p.P171R 0.41 deleterious(0.03) probably_damaging(0.998) TCGA-22-A5C4-01 3 155861006 155861006 C A KCNAB1 Intron 0.31 TCGA-22-A5C4-01 3 161214677 161214677 C T OTOL1 Missense_Mutation p.H28Y 0.30 tolerated(1) unknown(0) TCGA-22-A5C4-01 3 164741555 164741555 G C SI Missense_Mutation p.L968V 0.17 tolerated(0.56) benign(0.124) TCGA-22-A5C4-01 3 169574189 169574189 G A LRRC31 Missense_Mutation p.T253I 0.33 deleterious(0.02) benign(0.341) TCGA-22-A5C4-01 3 172165433 172165433 G T GHSR Missense_Mutation p.N257K 0.24 tolerated(0.06) benign(0.201) TCGA-22-A5C4-01 3 179470162 179470162 G A USP13 Splice_Site p.X600_splice 0.46 TCGA-22-A5C4-01 3 179519560 179519561 - T PEX5L 3'UTR 0.20 TCGA-22-A5C4-01 3 180381693 180381693 G T CCDC39 Missense_Mutation p.H58N 0.47 deleterious(0) possibly_damaging(0.82) TCGA-22-A5C4-01 3 186272101 186272101 G A TBCCD1 Nonsense_Mutation p.Q496* 0.07 TCGA-22-A5C4-01 3 186953595 186953596 - CC MASP1 Frame_Shift_Ins p.P689Dfs*53 0.31 TCGA-22-A5C4-01 3 195453367 195453367 A T MUC20 Silent p.S631S 0.11 TCGA-22-A5C4-01 3 196674405 196674405 G A PIGZ Missense_Mutation p.P455S 0.17 tolerated(0.1) benign(0.064) TCGA-22-A5C4-01 3 38050644 38050644 C T PLCD1 Missense_Mutation p.G559S 0.19 tolerated(0.73) benign(0.001) TCGA-22-A5C4-01 3 38135153 38135153 C T DLEC1 Missense_Mutation p.P605L 0.30 deleterious(0.04) possibly_damaging(0.723) TCGA-22-A5C4-01 3 38645512 38645512 C A SCN5A Silent p.G527G 0.54 TCGA-22-A5C4-01 3 58084593 58084593 G A FLNB Missense_Mutation p.D435N 0.57 tolerated(0.48) benign(0.139) TCGA-22-A5C4-01 3 60522599 60522599 G A FHIT Missense_Mutation p.P33S 0.38 deleterious(0.03) possibly_damaging(0.572) TCGA-22-A5C4-01 3 98189243 98189243 G A OR5K1 Missense_Mutation p.A275T 0.16 deleterious(0.01) possibly_damaging(0.866) TCGA-22-A5C4-01 4 10509637 10509637 G A CLNK Silent p.Y310Y 0.36 TCGA-22-A5C4-01 4 122301608 122301608 C A QRFPR Silent p.L65L 0.30 TCGA-22-A5C4-01 4 122301646 122301646 C T QRFPR Missense_Mutation p.V53M 0.11 tolerated(0.09) benign(0.042) TCGA-22-A5C4-01 4 122828458 122828458 G T TRPC3 Missense_Mutation p.T686N 0.20 deleterious(0.03) probably_damaging(0.939) TCGA-22-A5C4-01 4 126411871 126411871 G T FAT4 Missense_Mutation p.D4632Y 0.57 probably_damaging(0.998) TCGA-22-A5C4-01 4 143094920 143094920 G - INPP4B Frame_Shift_Del p.A410Qfs*15 0.22 TCGA-22-A5C4-01 4 151520217 151520217 C A LRBA Silent p.V1996V 0.23 TCGA-22-A5C4-01 4 153897220 153897220 G T FHDC1 Missense_Mutation p.G926V 0.27 tolerated(0.37) benign(0.003) TCGA-22-A5C4-01 4 155533694 155533694 G T FGG Missense_Mutation p.T23K 0.34 deleterious(0.01) possibly_damaging(0.548) TCGA-22-A5C4-01 4 176622800 176622800 A T GPM6A Silent p.S52S 0.22 TCGA-22-A5C4-01 4 20731629 20731629 A G KCNIP4 3'UTR 0.24 TCGA-22-A5C4-01 4 25370682 25370682 A T ZCCHC4 Missense_Mutation p.N480Y 0.20 deleterious(0.01) possibly_damaging(0.902) TCGA-22-A5C4-01 4 47628493 47628493 C T CORIN Silent p.P748P 0.24 TCGA-22-A5C4-01 4 70596330 70596330 T A SULT1B1 Missense_Mutation p.R223W 0.51 deleterious(0) possibly_damaging(0.806) TCGA-22-A5C4-01 4 72338797 72338798 - T SLC4A4 Intron 0.50 TCGA-22-A5C4-01 4 81967282 81967282 C G BMP3 Missense_Mutation p.P236R 0.26 tolerated(0.43) benign(0.023) TCGA-22-A5C4-01 5 118970720 118970720 C A FAM170A Intron 0.45 TCGA-22-A5C4-01 5 121188267 121188267 G T FTMT Missense_Mutation p.K203N 0.56 deleterious(0.01) possibly_damaging(0.724) TCGA-22-A5C4-01 5 1294239 1294239 C G TERT Silent p.G254G 0.17 TCGA-22-A5C4-01 5 140209649 140209649 C T PCDHA6 Missense_Mutation p.A658V 0.30 tolerated_low_confidence(0.1) benign(0.099) TCGA-22-A5C4-01 5 140741408 140741408 C T PCDHGB2 Missense_Mutation p.P569L 0.41 tolerated(0.05) possibly_damaging(0.806) TCGA-22-A5C4-01 5 160033793 160033793 G A ATP10B Missense_Mutation p.R1047C 0.25 deleterious(0) possibly_damaging(0.697) TCGA-22-A5C4-01 5 178359146 178359146 G A ZFP2 Missense_Mutation p.A278T 0.31 tolerated(0.24) possibly_damaging(0.825) TCGA-22-A5C4-01 5 21752249 21752249 T C CDH12 Missense_Mutation p.D661G 0.09 deleterious(0) probably_damaging(0.988) TCGA-22-A5C4-01 5 24535290 24535290 A T CDH10 Missense_Mutation p.L249I 0.45 deleterious(0) probably_damaging(0.952) TCGA-22-A5C4-01 5 24535291 24535291 G T CDH10 Silent p.G248G 0.45 TCGA-22-A5C4-01 5 34823306 34823306 A G RAI14 Silent p.K456K 0.12 TCGA-22-A5C4-01 5 43547930 43547930 C A PAIP1 Missense_Mutation p.G174V 0.26 deleterious(0) probably_damaging(0.997) TCGA-22-A5C4-01 5 74721246 74721246 G A COL4A3BP Nonsense_Mutation p.Q307* 0.62 TCGA-22-A5C4-01 5 78294019 78294019 C G DMGDH Silent p.V829V 0.56 TCGA-22-A5C4-01 6 117674228 117674228 C - ROS1 Frame_Shift_Del p.A1416Pfs*6 0.28 TCGA-22-A5C4-01 6 12165226 12165226 G A HIVEP1 3'UTR 0.18 TCGA-22-A5C4-01 6 128294899 128294899 G A PTPRK Missense_Mutation p.S1354F 0.15 deleterious(0) probably_damaging(0.992) TCGA-22-A5C4-01 6 133013397 133013397 C A VNN1 Nonsense_Mutation p.G385* 0.16 TCGA-22-A5C4-01 6 146242445 146242446 - A SHPRH Frame_Shift_Ins p.R1289Lfs*8 0.09 TCGA-22-A5C4-01 6 157522515 157522515 C G ARID1B Missense_Mutation p.P1596R 0.14 possibly_damaging(0.792) TCGA-22-A5C4-01 6 160491063 160491063 C G IGF2R Missense_Mutation p.I1472M 0.44 deleterious(0) probably_damaging(0.961) TCGA-22-A5C4-01 6 160679468 160679468 C A SLC22A2 Missense_Mutation p.A108S 0.35 tolerated(0.32) benign(0.052) TCGA-22-A5C4-01 6 165826979 165826990 TAGTACTTACAT - PDE10A Splice_Site p.X426_splice 0.18 TCGA-22-A5C4-01 6 169641997 169641997 T A THBS2 Missense_Mutation p.T251S 0.19 tolerated_low_confidence(0.84) benign(0.001) TCGA-22-A5C4-01 6 170628120 170628120 A T FAM120B Missense_Mutation p.T548S 0.40 tolerated_low_confidence(0.45) benign(0.053) TCGA-22-A5C4-01 6 24658857 24658857 C A TDP2 Missense_Mutation p.W119C 0.16 deleterious(0) probably_damaging(1) TCGA-22-A5C4-01 6 26157327 26157327 C A HIST1H1E 3'UTR 0.46 TCGA-22-A5C4-01 6 29395019 29395019 G T OR11A1 Missense_Mutation p.P134T 0.09 tolerated(0.4) benign(0.009) TCGA-22-A5C4-01 6 29430515 29430515 G T OR2H1 3'UTR 0.41 TCGA-22-A5C4-01 6 29571404 29571404 G A GABBR1 Silent p.P934P 0.18 TCGA-22-A5C4-01 6 32362760 32362760 T A BTNL2 Missense_Mutation p.D374V 0.18 deleterious(0) possibly_damaging(0.791) TCGA-22-A5C4-01 6 37344702 37344702 G C RNF8 Missense_Mutation p.E377Q 0.09 deleterious(0) probably_damaging(0.998) TCGA-22-A5C4-01 6 40400593 40400593 G C LRFN2 Missense_Mutation p.T87S 0.39 deleterious(0.02) probably_damaging(0.953) TCGA-22-A5C4-01 6 41318585 41318585 G A NCR2 Missense_Mutation p.D272N 0.42 tolerated_low_confidence(0.16) possibly_damaging(0.539) TCGA-22-A5C4-01 6 42932549 42932549 T A PEX6 Missense_Mutation p.R929W 0.23 deleterious(0) possibly_damaging(0.721) TCGA-22-A5C4-01 6 43152118 43152118 G T CUL9 Nonsense_Mutation p.E24* 0.14 TCGA-22-A5C4-01 6 44121919 44121919 C G TMEM63B Missense_Mutation p.N740K 0.20 tolerated(0.07) possibly_damaging(0.501) TCGA-22-A5C4-01 6 51882256 51882256 T A PKHD1 Missense_Mutation p.D1851V 0.42 deleterious(0.04) benign(0.104) TCGA-22-A5C4-01 6 52052553 52052553 C T IL17A Silent p.P60P 0.21 TCGA-22-A5C4-01 6 87725603 87725603 T C HTR1E Missense_Mutation p.I184T 0.38 deleterious(0) probably_damaging(0.983) TCGA-22-A5C4-01 7 100680362 100680362 A G MUC17 Missense_Mutation p.T1889A 0.38 benign(0.217) TCGA-22-A5C4-01 7 107824861 107824861 C T NRCAM Missense_Mutation p.E745K 0.12 tolerated(0.38) benign(0.008) TCGA-22-A5C4-01 7 117232516 117232516 G T CFTR Missense_Mutation p.R765S 0.31 deleterious(0) probably_damaging(0.94) TCGA-22-A5C4-01 7 123349236 123349236 C A WASL Silent p.R53R 0.22 TCGA-22-A5C4-01 7 127225131 127225131 T G GCC1 Missense_Mutation p.K36Q 0.38 deleterious(0.01) possibly_damaging(0.827) TCGA-22-A5C4-01 7 127235515 127235515 A C FSCN3 Missense_Mutation p.H100P 0.27 deleterious(0.01) probably_damaging(0.966) TCGA-22-A5C4-01 7 132193207 132193207 C - PLXNA4 Frame_Shift_Del p.T83Rfs*26 0.18 TCGA-22-A5C4-01 7 144071912 144071912 A G ARHGEF5 Missense_Mutation p.R1410G 0.22 deleterious(0.03) possibly_damaging(0.767) TCGA-22-A5C4-01 7 148112621 148112621 G T CNTNAP2 Silent p.S1303S 0.29 TCGA-22-A5C4-01 7 148700882 148700882 G A PDIA4 3'UTR 0.12 TCGA-22-A5C4-01 7 154564647 154564647 G C DPP6 Silent p.R377R 0.19 TCGA-22-A5C4-01 7 154751603 154751603 C T PAXIP1 Silent p.L825L 0.12 TCGA-22-A5C4-01 7 16341079 16341079 G C ISPD Missense_Mutation p.R268G 0.24 deleterious(0) possibly_damaging(0.887) TCGA-22-A5C4-01 7 16650199 16650199 T A ANKMY2 Missense_Mutation p.N241Y 0.36 deleterious(0) benign(0.092) TCGA-22-A5C4-01 7 20824133 20824133 C T SP8 Missense_Mutation p.A435T 0.44 deleterious(0.02) benign(0.057) TCGA-22-A5C4-01 7 22165239 22165239 C T RAPGEF5 Missense_Mutation p.C687Y 0.34 tolerated(0.07) benign(0.33) TCGA-22-A5C4-01 7 31378422 31378422 T C NEUROD6 Missense_Mutation p.K154R 0.23 deleterious(0.01) possibly_damaging(0.874) TCGA-22-A5C4-01 7 53103531 53103531 G T POM121L12 Missense_Mutation p.R56M 0.30 tolerated(0.06) probably_damaging(0.919) TCGA-22-A5C4-01 7 57193814 57193814 G T ZNF479 Missense_Mutation p.A58D 0.36 tolerated(0.06) possibly_damaging(0.593) TCGA-22-A5C4-01 7 73010043 73010043 T A MLXIPL Missense_Mutation p.Q745L 0.46 deleterious(0) probably_damaging(0.992) TCGA-22-A5C4-01 7 82785093 82785093 T C PCLO Missense_Mutation p.I288M 0.43 unknown(0) TCGA-22-A5C4-01 7 87081095 87081095 G T ABCB4 Silent p.I184I 0.33 TCGA-22-A5C4-01 7 91690594 91690597 ACAG - AKAP9 Frame_Shift_Del p.T1876Sfs*2 0.25 TCGA-22-A5C4-01 7 92244397 92244397 C A CDK6 3'UTR 0.33 TCGA-22-A5C4-01 8 100148962 100148962 G A VPS13B Missense_Mutation p.E545K 0.34 deleterious(0.01) possibly_damaging(0.636) TCGA-22-A5C4-01 8 100160077 100160077 G A VPS13B Missense_Mutation p.D618N 0.38 tolerated(0.05) benign(0.007) TCGA-22-A5C4-01 8 101936226 101936226 T G YWHAZ Missense_Mutation p.K212T 0.39 deleterious_low_confidence(0) probably_damaging(1) TCGA-22-A5C4-01 8 105436602 105436602 C A DPYS Missense_Mutation p.D370Y 0.24 deleterious(0) probably_damaging(0.988) TCGA-22-A5C4-01 8 105463593 105463593 C G DPYS Missense_Mutation p.A102P 0.08 deleterious(0.01) probably_damaging(0.989) TCGA-22-A5C4-01 8 110530491 110530491 C A PKHD1L1 Missense_Mutation p.P3929T 0.42 deleterious(0.02) possibly_damaging(0.447) TCGA-22-A5C4-01 8 113484843 113484843 G C CSMD3 Missense_Mutation p.S1791C 0.22 tolerated(0.17) probably_damaging(0.971) TCGA-22-A5C4-01 8 11606565 11606565 C A GATA4 Silent p.R252R 0.56 TCGA-22-A5C4-01 8 125035806 125035806 C A FER1L6 Missense_Mutation p.H752Q 0.26 deleterious(0.05) possibly_damaging(0.529) TCGA-22-A5C4-01 8 133053338 133053338 G T OC90 Missense_Mutation p.A137D 0.18 deleterious(0.01) benign(0.394) TCGA-22-A5C4-01 8 139610979 139610979 C A COL22A1 Nonsense_Mutation p.G1450* 0.24 TCGA-22-A5C4-01 8 140630824 140630824 G - KCNK9 Frame_Shift_Del p.R268Afs*75 0.18 TCGA-22-A5C4-01 8 140631239 140631239 G A KCNK9 Silent p.G129G 0.21 TCGA-22-A5C4-01 8 140631241 140631241 C A KCNK9 Missense_Mutation p.G129C 0.21 deleterious(0) probably_damaging(1) TCGA-22-A5C4-01 8 143856577 143856577 C T LYNX1 Intron 0.15 TCGA-22-A5C4-01 8 143996141 143996141 C A CYP11B2 Missense_Mutation p.W260L 0.45 deleterious(0) probably_damaging(1) TCGA-22-A5C4-01 8 145692597 145692597 C G KIFC2 Silent p.V114V 0.29 TCGA-22-A5C4-01 8 38831738 38831738 G A HTRA4 5'UTR 0.09 TCGA-22-A5C4-01 8 38880757 38880757 G T ADAM9 Missense_Mutation p.G276V 0.13 tolerated(0.07) possibly_damaging(0.673) TCGA-22-A5C4-01 8 41566404 41566404 G A ANK1 Silent p.A663A 0.11 TCGA-22-A5C4-01 8 53570563 53570563 G T RB1CC1 Missense_Mutation p.Q639K 0.07 tolerated_low_confidence(0.11) benign(0.314) TCGA-22-A5C4-01 8 62289162 62289162 A G CLVS1 Splice_Site p.X152_splice 0.26 TCGA-22-A5C4-01 8 623987 623987 T A ERICH1 Missense_Mutation p.K122I 0.52 deleterious(0.04) benign(0.111) TCGA-22-A5C4-01 8 68340290 68340290 G A CPA6 Missense_Mutation p.T373I 0.41 deleterious(0) benign(0.427) TCGA-22-A5C4-01 8 75272371 75272371 G T GDAP1 Splice_Site p.X104_splice 0.36 TCGA-22-A5C4-01 8 99205187 99205187 C T NIPAL2 3'UTR 0.29 TCGA-22-A5C4-01 9 101594160 101594160 G A GALNT12 Missense_Mutation p.D280N 0.24 deleterious(0.01) benign(0.325) TCGA-22-A5C4-01 9 117087101 117087101 G T ORM1 Silent p.L120L 0.55 TCGA-22-A5C4-01 9 118949701 118949701 C A PAPPA Missense_Mutation p.F228L 0.58 tolerated(0.09) possibly_damaging(0.786) TCGA-22-A5C4-01 9 130162254 130162254 C T SLC2A8 Silent p.V165V 0.33 TCGA-22-A5C4-01 9 132662756 132662756 T A FNBP1 Missense_Mutation p.Y500F 0.33 tolerated(0.47) benign(0.001) TCGA-22-A5C4-01 9 135357779 135357779 G T C9orf171 Missense_Mutation p.G93V 0.56 tolerated_low_confidence(0.24) benign(0.344) TCGA-22-A5C4-01 9 135777012 135777013 AC - TSC1 Frame_Shift_Del p.C822Sfs*3 0.37 TCGA-22-A5C4-01 9 16435566 16435566 G A BNC2 Nonsense_Mutation p.R876* 0.28 TCGA-22-A5C4-01 9 21971186 21971186 G A CDKN2A Nonsense_Mutation p.R58* 0.67 TCGA-22-A5C4-01 9 27047271 27047271 G C IFT74 Splice_Site p.X370_splice 0.41 TCGA-22-A5C4-01 9 5919720 5919720 C A KIAA2026 Silent p.S2092S 0.67 TCGA-22-A5C4-01 X 101408823 101408823 C G BEX5 3'UTR 0.21 TCGA-22-A5C4-01 X 106486459 106486459 C A PIH1D3 Silent p.I192I 0.72 TCGA-22-A5C4-01 X 106845111 106845111 G A FRMPD3 Missense_Mutation p.R1314H 0.35 deleterious(0) probably_damaging(0.952) TCGA-22-A5C4-01 X 107169966 107169966 C T MID2 Missense_Mutation p.S624L 0.29 deleterious(0) probably_damaging(0.999) TCGA-22-A5C4-01 X 107408190 107408190 G C COL4A6 Missense_Mutation p.P1297R 0.65 probably_damaging(0.993) TCGA-22-A5C4-01 X 110654188 110654188 G T DCX Silent p.P5P 0.76 TCGA-22-A5C4-01 X 132351177 132351177 C T TFDP3 Missense_Mutation p.G371S 0.73 tolerated(0.72) benign(0) TCGA-22-A5C4-01 X 151896692 151896692 G A MAGEA12 3'Flank 0.67 TCGA-22-A5C4-01 X 17070521 17070523 CTT - REPS2 In_Frame_Del p.F310del 0.24 TCGA-22-A5C4-01 X 208321 208321 G T PLCXD1 Silent p.G183G 0.22 TCGA-22-A5C4-01 X 34150007 34150007 G A FAM47A Missense_Mutation p.P130L 0.87 deleterious(0) probably_damaging(0.991) TCGA-22-A5C4-01 X 35959465 35959465 G T CXorf22 Missense_Mutation p.S156I 0.60 deleterious(0.01) probably_damaging(0.997) TCGA-22-A5C4-01 X 47030480 47030480 G T RBM10 Silent p.R85R 0.88 TCGA-22-A5C4-01 X 57473388 57473388 G T FAAH2 Missense_Mutation p.G382C 0.53 deleterious(0) probably_damaging(0.93) TCGA-22-A5C4-01 X 68059567 68059567 G C EFNB1 Missense_Mutation p.R156P 0.63 deleterious(0.01) probably_damaging(0.958) TCGA-22-A5C4-01 X 73044336 73044336 C T XIST RNA 0.50 TCGA-22-A5C4-01 X 77913440 77913440 C A ZCCHC5 Missense_Mutation p.D160Y 0.66 deleterious(0.04) benign(0.017) TCGA-22-A5C4-01 X 77913441 77913441 C A ZCCHC5 Missense_Mutation p.Q159H 0.66 tolerated(0.37) benign(0.005) TCGA-22-A5C4-01 Y 4925215 4925215 C G PCDH11Y Missense_Mutation p.F117L 0.45 deleterious(0.05) benign(0.045) TCGA-33-4532-01 10 117093820 117093820 C T ATRNL1 Silent p.C1022C 0.24 TCGA-33-4532-01 10 118084897 118084897 T C CCDC172 Silent p.S54S 0.42 TCGA-33-4532-01 10 118084900 118084900 G A CCDC172 Silent p.K55K 0.43 TCGA-33-4532-01 10 119017365 119017365 G T SLC18A2 Missense_Mutation p.W318L 0.46 deleterious(0) benign(0.102) TCGA-33-4532-01 10 120867505 120867505 G T FAM45A Silent p.L27L 0.27 TCGA-33-4532-01 10 1284216 1284216 T C ADARB2 Missense_Mutation p.T447A 0.35 tolerated(0.94) benign(0) TCGA-33-4532-01 10 13375904 13375904 G T SEPHS1 Missense_Mutation p.S158Y 0.12 deleterious(0.04) benign(0.258) TCGA-33-4532-01 10 135440183 135440183 G T FRG2B Missense_Mutation p.P22T 0.05 tolerated(0.17) possibly_damaging(0.907) TCGA-33-4532-01 10 17147511 17147511 C A CUBN Missense_Mutation p.C392F 0.25 deleterious(0) probably_damaging(0.999) TCGA-33-4532-01 10 17363299 17363299 C A ST8SIA6 Missense_Mutation p.A259S 0.23 tolerated(0.31) benign(0.023) TCGA-33-4532-01 10 22171304 22171304 A G DNAJC1 Silent p.Y295Y 0.18 TCGA-33-4532-01 10 26534906 26534906 G A GAD2 Silent p.V299V 0.08 TCGA-33-4532-01 10 34573111 34573111 G A PARD3 Missense_Mutation p.S1046F 0.11 tolerated(0.06) benign(0.282) TCGA-33-4532-01 10 43292046 43292046 G T BMS1 Nonsense_Mutation p.E452* 0.40 TCGA-33-4532-01 10 50835813 50835813 A T CHAT Missense_Mutation p.R365W 0.27 deleterious(0.02) probably_damaging(0.974) TCGA-33-4532-01 10 64913362 64913362 G T NRBF2 Missense_Mutation p.R83I 0.24 deleterious(0.02) probably_damaging(0.945) TCGA-33-4532-01 10 71266827 71266827 G T TSPAN15 3'UTR 0.25 TCGA-33-4532-01 10 81373751 81373751 A G SFTPA1 Missense_Mutation p.N225S 0.42 tolerated(0.06) benign(0.055) TCGA-33-4532-01 10 85970803 85970803 C G CDHR1 Missense_Mutation p.A456G 0.46 deleterious(0) probably_damaging(0.999) TCGA-33-4532-01 10 95276824 95276824 A G CEP55 Missense_Mutation p.E271G 0.45 tolerated(0.06) benign(0.086) TCGA-33-4532-01 10 97919144 97919144 G T ZNF518A RNA 0.30 TCGA-33-4532-01 11 101785985 101785985 G T KIAA1377 5'UTR 0.28 TCGA-33-4532-01 11 101833343 101833343 A G KIAA1377 Missense_Mutation p.Y526C 0.27 tolerated(0.3) benign(0.006) TCGA-33-4532-01 11 102586136 102586136 C G MMP8 Missense_Mutation p.R312T 0.12 tolerated(0.2) benign(0.002) TCGA-33-4532-01 11 113146071 113146071 G A NCAM1 Missense_Mutation p.D896N 0.15 tolerated(0.52) benign(0) TCGA-33-4532-01 11 117314643 117314643 C T DSCAML1 Missense_Mutation p.G1334D 0.14 deleterious(0) probably_damaging(0.999) TCGA-33-4532-01 11 118007727 118007727 A T SCN4B 3'UTR 0.39 TCGA-33-4532-01 11 118947642 118947642 G T VPS11 Missense_Mutation p.R424L 0.49 deleterious(0) probably_damaging(1) TCGA-33-4532-01 11 119206720 119206720 G C RNF26 Missense_Mutation p.Q296H 0.45 deleterious(0.02) benign(0.049) TCGA-33-4532-01 11 132398972 132398972 C T OPCML Missense_Mutation p.R170K 0.21 tolerated(0.35) benign(0.006) TCGA-33-4532-01 11 133715280 133715280 A T SPATA19 Missense_Mutation p.L21Q 0.38 deleterious(0.02) benign(0.102) TCGA-33-4532-01 11 133790529 133790529 G T IGSF9B Missense_Mutation p.P1031T 0.15 deleterious_low_confidence(0) possibly_damaging(0.535) TCGA-33-4532-01 11 18195697 18195697 G A MRGPRX4 Silent p.K298K 0.21 TCGA-33-4532-01 11 18955915 18955915 T C MRGPRX1 Silent p.S139S 0.23 TCGA-33-4532-01 11 26730881 26730881 A G SLC5A12 Missense_Mutation p.V168A 0.30 deleterious(0) possibly_damaging(0.737) TCGA-33-4532-01 11 32954413 32954413 G C QSER1 Missense_Mutation p.E408Q 0.12 tolerated(0.13) possibly_damaging(0.894) TCGA-33-4532-01 11 5345319 5345319 A C OR51B2 Missense_Mutation p.M70R 0.24 deleterious(0.01) benign(0.048) TCGA-33-4532-01 11 55652964 55652964 C G TRIM51 Missense_Mutation p.N20K 0.38 tolerated(0.18) benign(0.168) TCGA-33-4532-01 11 55658796 55658796 C A TRIM51 Missense_Mutation p.D349E 0.33 deleterious(0.03) benign(0.028) TCGA-33-4532-01 11 57102589 57102589 C A SSRP1 Nonsense_Mutation p.E3* 0.45 TCGA-33-4532-01 11 5862213 5862213 C T OR52E6 Silent p.L305L 0.10 TCGA-33-4532-01 11 60635139 60635139 A T ZP1 Silent p.P35P 0.23 TCGA-33-4532-01 11 62038457 62038457 G A SCGB2A2 Missense_Mutation p.A54T 0.44 tolerated(0.64) benign(0.011) TCGA-33-4532-01 11 62038458 62038458 C T SCGB2A2 Missense_Mutation p.A54V 0.43 tolerated(0.41) benign(0.006) TCGA-33-4532-01 11 64074792 64074792 C G ESRRA Silent p.L47L 0.17 TCGA-33-4532-01 11 65480110 65480110 A T KAT5 Intron 0.32 TCGA-33-4532-01 11 70221220 70221220 G C PPFIA1 Intron 0.16 TCGA-33-4532-01 11 76372428 76372428 C T LRRC32 Missense_Mutation p.G70D 0.14 tolerated(0.55) benign(0.033) TCGA-33-4532-01 11 8947122 8947122 T C C11orf16 Silent p.A364A 0.18 TCGA-33-4532-01 12 10132050 10132050 G T CLEC12A Missense_Mutation p.K112N 0.29 tolerated(0.32) benign(0.039) TCGA-33-4532-01 12 10374510 10374510 G T GABARAPL1 3'UTR 0.53 TCGA-33-4532-01 12 105451930 105451930 G T ALDH1L2 Missense_Mutation p.T403N 0.36 tolerated_low_confidence(0.05) possibly_damaging(0.47) TCGA-33-4532-01 12 108954989 108954989 A G SART3 5'UTR 0.54 TCGA-33-4532-01 12 119617078 119617078 C T HSPB8 5'UTR 0.14 TCGA-33-4532-01 12 119617098 119617098 C T HSPB8 5'UTR 0.12 TCGA-33-4532-01 12 119617130 119617130 C T HSPB8 Nonsense_Mutation p.Q5* 0.14 TCGA-33-4532-01 12 119617144 119617144 C T HSPB8 Silent p.S9S 0.14 TCGA-33-4532-01 12 119617239 119617239 C T HSPB8 Missense_Mutation p.P41L 0.15 tolerated(0.28) benign(0.162) TCGA-33-4532-01 12 119617283 119617283 C T HSPB8 Missense_Mutation p.L56F 0.17 tolerated(0.07) benign(0.085) TCGA-33-4532-01 12 119617290 119617290 C T HSPB8 Missense_Mutation p.S58F 0.16 deleterious(0) possibly_damaging(0.791) TCGA-33-4532-01 12 122958565 122958565 C T ZCCHC8 Missense_Mutation p.E535K 0.36 deleterious(0.01) probably_damaging(0.994) TCGA-33-4532-01 12 123800192 123800192 G C SBNO1 Nonsense_Mutation p.S984* 0.17 TCGA-33-4532-01 12 130015694 130015694 A G TMEM132D Missense_Mutation p.I342T 0.31 tolerated(0.45) benign(0.004) TCGA-33-4532-01 12 130929768 130929768 G T RIMBP2 Missense_Mutation p.P193T 0.40 deleterious(0.01) probably_damaging(1) TCGA-33-4532-01 12 13717454 13717454 C G GRIN2B Missense_Mutation p.K906N 0.36 deleterious(0) probably_damaging(0.999) TCGA-33-4532-01 12 13717533 13717533 C G GRIN2B Missense_Mutation p.R880P 0.33 deleterious(0.04) possibly_damaging(0.698) TCGA-33-4532-01 12 248014 248014 G C IQSEC3 Missense_Mutation p.Q495H 0.09 tolerated(0.18) benign(0.176) TCGA-33-4532-01 12 25149149 25149149 G T C12orf77 Missense_Mutation p.T43K 0.38 deleterious_low_confidence(0.03) benign(0.008) TCGA-33-4532-01 12 2721167 2721167 C G CACNA1C Silent p.A1292A 0.31 TCGA-33-4532-01 12 2760764 2760765 - T CACNA1C Intron 0.27 TCGA-33-4532-01 12 4553375 4553375 C T FGF6 Missense_Mutation p.R125Q 0.07 tolerated(0.26) benign(0.003) TCGA-33-4532-01 12 461444 461444 C A KDM5A Missense_Mutation p.R359L 0.35 deleterious(0) benign(0.423) TCGA-33-4532-01 12 49072821 49072821 T A KANSL2 Silent p.L181L 0.69 TCGA-33-4532-01 12 50388061 50388061 C G RACGAP1 Missense_Mutation p.E398Q 0.43 tolerated(0.09) probably_damaging(0.999) TCGA-33-4532-01 12 53004486 53004486 C A KRT73 Missense_Mutation p.R415L 0.41 deleterious(0.02) benign(0.11) TCGA-33-4532-01 12 53045515 53045515 G T KRT2 Missense_Mutation p.P138T 0.38 tolerated(0.29) unknown(0) TCGA-33-4532-01 12 54422463 54422463 C A HOXC6 Missense_Mutation p.P53H 0.13 deleterious(0) probably_damaging(0.999) TCGA-33-4532-01 12 56647572 56647572 T C ANKRD52 Missense_Mutation p.K307E 0.17 deleterious(0) possibly_damaging(0.614) TCGA-33-4532-01 12 63954358 63954358 T C DPY19L2 Silent p.E737E 0.44 TCGA-33-4532-01 12 64879294 64879294 G C TBK1 Splice_Site p.X416_splice 0.17 TCGA-33-4532-01 12 66605326 66605326 A T IRAK3 Silent p.V179V 0.33 TCGA-33-4532-01 12 78530995 78530995 C G NAV3 Missense_Mutation p.P1494A 0.41 deleterious(0.01) possibly_damaging(0.511) TCGA-33-4532-01 12 81777926 81777926 A G PPFIA2 Missense_Mutation p.M287T 0.19 tolerated(0.38) benign(0.033) TCGA-33-4532-01 12 95416028 95416028 G C NR2C1 Missense_Mutation p.Q597E 0.14 tolerated(0.08) probably_damaging(0.966) TCGA-33-4532-01 13 109772789 109772789 G T MYO16 Missense_Mutation p.Q1148H 0.19 tolerated(0.23) benign(0.117) TCGA-33-4532-01 13 113826141 113826141 G A PROZ Missense_Mutation p.D331N 0.09 tolerated(0.35) benign(0.002) TCGA-33-4532-01 13 23929364 23929364 G A SACS Missense_Mutation p.H463Y 0.69 probably_damaging(0.989) TCGA-33-4532-01 13 23929365 23929365 A T SACS Silent p.V462V 0.69 TCGA-33-4532-01 13 24876771 24876771 G T SPATA13 Missense_Mutation p.G1232C 0.52 deleterious(0.03) benign(0.037) TCGA-33-4532-01 13 28011400 28011400 C G MTIF3 Silent p.L157L 0.12 TCGA-33-4532-01 13 28014382 28014383 TG - MTIF3 Frame_Shift_Del p.T68Kfs*4 0.12 TCGA-33-4532-01 13 28623591 28623591 T C FLT3 Silent p.R322R 0.09 TCGA-33-4532-01 13 37574861 37574861 C T EXOSC8 5'UTR 0.50 TCGA-33-4532-01 13 41767463 41767463 G C KBTBD7 Missense_Mutation p.L311V 0.10 tolerated(0.36) benign(0.002) TCGA-33-4532-01 13 42876298 42876298 C G AKAP11 Missense_Mutation p.S1139C 0.12 deleterious(0) probably_damaging(1) TCGA-33-4532-01 13 46632487 46632487 C T CPB2 Missense_Mutation p.E276K 0.64 deleterious(0.01) possibly_damaging(0.897) TCGA-33-4532-01 13 77589613 77589613 G A FBXL3 Silent p.L192L 0.15 TCGA-33-4532-01 13 86369028 86369028 G T SLITRK6 Missense_Mutation p.T539K 0.72 deleterious(0.01) benign(0.294) TCGA-33-4532-01 13 92345699 92345699 G T GPC5 Missense_Mutation p.R195L 0.15 deleterious(0) probably_damaging(0.961) TCGA-33-4532-01 13 92797143 92797143 G A GPC5 Missense_Mutation p.G488R 0.13 tolerated(0.05) benign(0.119) TCGA-33-4532-01 14 101335467 101335467 G T MIR493 RNA 0.11 TCGA-33-4532-01 14 104206296 104206296 G A PPP1R13B Silent p.D819D 0.06 TCGA-33-4532-01 14 23826697 23826697 T C EFS Missense_Mutation p.K475R 0.41 deleterious(0.04) possibly_damaging(0.62) TCGA-33-4532-01 14 35234367 35234367 C G BAZ1A Missense_Mutation p.D1137H 0.34 deleterious(0) probably_damaging(0.99) TCGA-33-4532-01 14 44973932 44973932 T A FSCB Silent p.V753V 0.51 TCGA-33-4532-01 14 47343269 47343269 C A MDGA2 Missense_Mutation p.D858Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-33-4532-01 14 57675449 57675449 C A EXOC5 Missense_Mutation p.D669Y 0.50 deleterious(0) probably_damaging(0.984) TCGA-33-4532-01 14 59112477 59112477 G T DACT1 Missense_Mutation p.R379I 0.45 deleterious(0) probably_damaging(0.999) TCGA-33-4532-01 14 59822020 59822020 A G DAAM1 Missense_Mutation p.K842E 0.13 deleterious(0) probably_damaging(0.997) TCGA-33-4532-01 14 69558590 69558590 T C DCAF5 Missense_Mutation p.Y227C 0.53 deleterious(0.01) probably_damaging(0.991) TCGA-33-4532-01 14 71197040 71197040 G A MAP3K9 3'UTR 0.09 TCGA-33-4532-01 14 76964656 76964656 C T ESRRB Missense_Mutation p.P386L 0.49 tolerated(0.13) probably_damaging(0.957) TCGA-33-4532-01 14 76965079 76965079 G T ESRRB Intron 0.27 TCGA-33-4532-01 14 76965080 76965080 G T ESRRB Intron 0.26 TCGA-33-4532-01 14 77919736 77919736 C T VIPAS39 Silent p.E34E 0.13 TCGA-33-4532-01 14 80164196 80164196 A G NRXN3 Silent p.P907P 0.34 TCGA-33-4532-01 14 81259310 81259310 C A CEP128 Nonsense_Mutation p.E452* 0.44 TCGA-33-4532-01 14 81743488 81743488 C A STON2 Missense_Mutation p.V723F 0.07 tolerated(0.12) probably_damaging(0.986) TCGA-33-4532-01 14 86088740 86088740 G T FLRT2 Silent p.G294G 0.10 TCGA-33-4532-01 14 92471638 92471638 T C TRIP11 Silent p.L894L 0.60 TCGA-33-4532-01 14 94731758 94731758 C G PPP4R4 Silent p.P744P 0.11 TCGA-33-4532-01 14 95786073 95786073 G T CLMN Missense_Mutation p.S19R 0.08 deleterious(0.02) possibly_damaging(0.839) TCGA-33-4532-01 15 101597168 101597168 C G LRRK1 Missense_Mutation p.I1480M 0.05 deleterious(0.04) probably_damaging(0.979) TCGA-33-4532-01 15 102191910 102191910 G A TM2D3 Missense_Mutation p.P53L 0.06 tolerated(0.06) benign(0.03) TCGA-33-4532-01 15 102191952 102191952 G C TM2D3 Nonsense_Mutation p.S39* 0.05 TCGA-33-4532-01 15 102191970 102191970 G A TM2D3 Missense_Mutation p.S33L 0.05 deleterious(0.01) benign(0.003) TCGA-33-4532-01 15 20193123 20193123 T A IGHV3OR15-7 Missense_Mutation p.S49C 0.12 deleterious_low_confidence(0) possibly_damaging(0.9) TCGA-33-4532-01 15 25456944 25456944 G C SNORD115-23 RNA 0.22 TCGA-33-4532-01 15 44062447 44062447 G T PDIA3 Splice_Site p.X423_splice 0.11 TCGA-33-4532-01 15 44066938 44066938 C A ELL3 Nonsense_Mutation p.E227* 0.18 TCGA-33-4532-01 15 45059595 45059595 A T TRIM69 Silent p.G376G 0.31 TCGA-33-4532-01 15 45387146 45387146 C A DUOX2 Missense_Mutation p.R1461S 0.21 deleterious(0) possibly_damaging(0.887) TCGA-33-4532-01 15 48435118 48435118 T C MYEF2 Missense_Mutation p.D597G 0.26 deleterious(0) probably_damaging(0.995) TCGA-33-4532-01 15 48577447 48577447 G A SLC12A1 Splice_Site p.X877_splice 0.14 TCGA-33-4532-01 15 55724695 55724695 C A DYX1C1 Missense_Mutation p.G385C 0.08 deleterious(0) probably_damaging(0.995) TCGA-33-4532-01 15 83350255 83350255 C T AP3B2 Missense_Mutation p.M146I 0.11 deleterious(0.01) benign(0.089) TCGA-33-4532-01 15 83395459 83395459 G A AC105339.2 5'Flank 0.20 TCGA-33-4532-01 15 86076900 86076900 T A AKAP13 Missense_Mutation p.F89L 0.08 deleterious(0.05) probably_damaging(0.987) TCGA-33-4532-01 15 86076901 86076901 C T AKAP13 Missense_Mutation p.H90Y 0.08 deleterious(0.01) benign(0.434) TCGA-33-4532-01 15 90319886 90319886 G T MESP2 Missense_Mutation p.A100S 0.69 deleterious(0) probably_damaging(0.999) TCGA-33-4532-01 15 99023833 99023833 C G FAM169B Missense_Mutation p.M60I 0.03 tolerated(0.4) benign(0.017) TCGA-33-4532-01 16 11785816 11785816 T C TXNDC11 Silent p.A410A 0.15 TCGA-33-4532-01 16 18804382 18804382 G A ARL6IP1 3'UTR 0.36 TCGA-33-4532-01 16 27802663 27802663 A T GSG1L 3'UTR 0.24 TCGA-33-4532-01 16 2819118 2819118 T C SRRM2 Silent p.S2618S 0.33 TCGA-33-4532-01 16 28922461 28922461 C A RABEP2 Nonsense_Mutation p.E312* 0.25 TCGA-33-4532-01 16 30681050 30681050 G T FBRS 3'UTR 0.26 TCGA-33-4532-01 16 31382415 31382415 G A ITGAX Missense_Mutation p.G574D 0.16 deleterious(0) probably_damaging(0.975) TCGA-33-4532-01 16 31405562 31405562 G C ITGAD Missense_Mutation p.A13P 0.23 tolerated(0.1) benign(0.142) TCGA-33-4532-01 16 31502156 31502156 T A C16orf58 Nonstop_Mutation p.*469Cext*101 0.30 TCGA-33-4532-01 16 3788606 3788606 A C CREBBP Missense_Mutation p.Y1450D 0.38 unknown(0) TCGA-33-4532-01 16 51175596 51175596 G - SALL1 Frame_Shift_Del p.D181Tfs*2 0.26 TCGA-33-4532-01 16 55361550 55361550 G T IRX6 Nonsense_Mutation p.E156* 0.34 TCGA-33-4532-01 16 57601428 57601428 C A GPR114 Missense_Mutation p.T249K 0.45 deleterious(0.03) possibly_damaging(0.849) TCGA-33-4532-01 16 65022192 65022192 T C CDH11 Silent p.R289R 0.14 TCGA-33-4532-01 16 67572954 67572954 A T FAM65A Nonsense_Mutation p.K127* 0.22 TCGA-33-4532-01 16 75146141 75146141 T C LDHD 3'UTR 0.42 TCGA-33-4532-01 16 76592434 76592434 G C CNTNAP4 Missense_Mutation p.A1188P 0.39 deleterious(0.03) probably_damaging(0.955) TCGA-33-4532-01 17 10233743 10233743 T G MYH13 Missense_Mutation p.Y799S 0.78 tolerated(0.24) benign(0.206) TCGA-33-4532-01 17 10408812 10408812 C T MYH1 Missense_Mutation p.A731T 0.10 deleterious(0.04) benign(0.445) TCGA-33-4532-01 17 11827186 11827186 G C DNAH9 Silent p.G3935G 0.73 TCGA-33-4532-01 17 1638985 1638985 G A WDR81 Missense_Mutation p.V1767M 0.85 deleterious(0.01) benign(0.168) TCGA-33-4532-01 17 38788534 38788534 C T SMARCE1 Silent p.E209E 0.84 TCGA-33-4532-01 17 39197320 39197320 T C KRTAP1-1 Silent p.G110G 0.75 TCGA-33-4532-01 17 39334352 39334352 C T KRTAP4-2 Missense_Mutation p.R22H 0.12 tolerated(0.12) unknown(0) TCGA-33-4532-01 17 39535405 39535405 C T KRT34 Silent p.L342L 0.84 TCGA-33-4532-01 17 40826032 40826032 C T PLEKHH3 Splice_Site p.X73_splice 0.54 TCGA-33-4532-01 17 40880863 40880863 G T EZH1 Missense_Mutation p.Q33K 0.77 tolerated(1) possibly_damaging(0.824) TCGA-33-4532-01 17 42477692 42477692 T C GPATCH8 Missense_Mutation p.R585G 0.08 deleterious(0.01) possibly_damaging(0.835) TCGA-33-4532-01 17 49708861 49708861 G T CA10 3'UTR 0.87 TCGA-33-4532-01 17 51900535 51900535 G T KIF2B Silent p.T47T 0.71 TCGA-33-4532-01 17 51902274 51902274 C G KIF2B Missense_Mutation p.A627G 0.82 deleterious(0) benign(0.113) TCGA-33-4532-01 17 57430779 57430779 G C YPEL2 Missense_Mutation p.K3N 0.12 deleterious_low_confidence(0) benign(0.253) TCGA-33-4532-01 17 6328914 6328914 C A AIPL1 Nonsense_Mutation p.E341* 0.75 TCGA-33-4532-01 17 64179375 64179375 C A CEP112 Missense_Mutation p.A15S 0.72 tolerated(0.44) benign(0.095) TCGA-33-4532-01 17 66979855 66979855 C A ABCA9 Missense_Mutation p.Q1545H 0.82 deleterious(0) probably_damaging(0.987) TCGA-33-4532-01 17 72436967 72436967 G T GPRC5C Splice_Site p.X396_splice 0.06 TCGA-33-4532-01 17 72741339 72741339 T A RAB37 Intron 0.07 TCGA-33-4532-01 17 7577570 7577570 C A TP53 Missense_Mutation p.M237I 0.69 deleterious(0) probably_damaging(0.997) TCGA-33-4532-01 17 9846539 9846539 G T GAS7 Missense_Mutation p.D210E 0.03 tolerated(0.18) possibly_damaging(0.794) TCGA-33-4532-01 18 13048935 13048935 C T CEP192 Silent p.I715I 0.29 TCGA-33-4532-01 18 13884475 13884475 G T MC2R 3'UTR 0.50 TCGA-33-4532-01 18 21125076 21125076 G C NPC1 Missense_Mutation p.L599V 0.05 tolerated(0.07) benign(0.443) TCGA-33-4532-01 18 29703512 29703512 A G RNF138 Missense_Mutation p.T142A 0.11 tolerated(0.73) benign(0.002) TCGA-33-4532-01 18 32621640 32621640 A G MAPRE2 Intron 0.38 TCGA-33-4532-01 18 348087 348087 C G COLEC12 Silent p.V86V 0.27 TCGA-33-4532-01 18 47801364 47801364 C T MBD1 Missense_Mutation p.V321I 0.15 tolerated(0.05) benign(0.113) TCGA-33-4532-01 18 55020017 55020017 G A ST8SIA3 5'UTR 0.39 TCGA-33-4532-01 18 55319349 55319349 C T ATP8B1 Missense_Mutation p.S1106N 0.35 deleterious(0) probably_damaging(0.997) TCGA-33-4532-01 18 6999568 6999568 C A LAMA1 Silent p.P1513P 0.34 TCGA-33-4532-01 18 76753205 76753205 C T SALL3 Missense_Mutation p.S405L 0.16 deleterious(0) probably_damaging(0.97) TCGA-33-4532-01 19 10600448 10600449 - T KEAP1 Frame_Shift_Ins p.N469Kfs*11 0.51 TCGA-33-4532-01 19 15918646 15918646 C T OR10H1 Missense_Mutation p.V68I 0.76 tolerated(1) benign(0) TCGA-33-4532-01 19 16437684 16437684 T C KLF2 Missense_Mutation p.C304R 0.61 deleterious(0) unknown(0) TCGA-33-4532-01 19 17186296 17186296 T C HAUS8 5'UTR 0.73 TCGA-33-4532-01 19 22154271 22154271 C A ZNF208 Missense_Mutation p.V1189L 0.49 deleterious(0.05) benign(0.028) TCGA-33-4532-01 19 30934951 30934951 C G ZNF536 Missense_Mutation p.P161R 0.32 deleterious(0) probably_damaging(1) TCGA-33-4532-01 19 37975309 37975309 T C ZNF570 Missense_Mutation p.V262A 0.08 tolerated(1) probably_damaging(0.994) TCGA-33-4532-01 19 38964024 38964024 G T RYR1 Missense_Mutation p.R1258L 0.17 probably_damaging(0.995) TCGA-33-4532-01 19 39409109 39409109 C T SARS2 Missense_Mutation p.R292H 0.04 tolerated(0.09) benign(0.034) TCGA-33-4532-01 19 41450658 41450658 C T AC092071.1 5'Flank 0.44 TCGA-33-4532-01 19 4179132 4179132 C T SIRT6 Missense_Mutation p.D116N 0.59 deleterious(0) probably_damaging(0.993) TCGA-33-4532-01 19 44223450 44223450 C T IRGC Missense_Mutation p.S247L 0.42 deleterious(0.01) probably_damaging(0.993) TCGA-33-4532-01 19 44301711 44301711 G A LYPD5 3'UTR 0.26 TCGA-33-4532-01 19 44351978 44351978 G T ZNF283 Missense_Mutation p.G409W 0.26 deleterious(0) probably_damaging(1) TCGA-33-4532-01 19 45262824 45262824 A T BCL3 Silent p.R439R 0.24 TCGA-33-4532-01 19 45445492 45445492 G C APOC2 5'Flank 0.18 TCGA-33-4532-01 19 46878998 46878998 C T PPP5C Silent p.I167I 0.22 TCGA-33-4532-01 19 5131396 5131396 A T KDM4B Missense_Mutation p.Q542L 0.69 benign(0.001) TCGA-33-4532-01 19 5131397 5131397 G T KDM4B Missense_Mutation p.Q542H 0.70 benign(0.014) TCGA-33-4532-01 19 51602334 51602334 G A CTU1 Missense_Mutation p.R191W 0.50 deleterious(0) probably_damaging(0.999) TCGA-33-4532-01 19 51920156 51920156 C T SIGLEC10 Missense_Mutation p.G157E 0.30 deleterious(0.02) probably_damaging(0.99) TCGA-33-4532-01 19 53453974 53453974 G T ZNF816 Silent p.R352R 0.15 TCGA-33-4532-01 19 54545450 54545450 C A VSTM1 Missense_Mutation p.S163I 0.42 deleterious(0) benign(0.003) TCGA-33-4532-01 19 54759149 54759149 C T LILRB5 Missense_Mutation p.G318R 0.38 deleterious(0.02) benign(0.383) TCGA-33-4532-01 19 55452951 55452951 C T NLRP7 Nonsense_Mutation p.W43* 0.15 TCGA-33-4532-01 19 55494236 55494236 C A NLRP2 Silent p.A390A 0.36 TCGA-33-4532-01 19 56481925 56481925 G T NLRP8 Missense_Mutation p.L799F 0.25 tolerated(0.06) benign(0.226) TCGA-33-4532-01 19 56539467 56539467 A T NLRP5 Missense_Mutation p.Q623L 0.24 deleterious(0.01) possibly_damaging(0.764) TCGA-33-4532-01 19 57286820 57286820 G T ZIM2 Missense_Mutation p.P274T 0.25 tolerated(0.3) benign(0.027) TCGA-33-4532-01 19 57335870 57335870 G T PEG3 Missense_Mutation p.L52I 0.21 deleterious(0.02) benign(0.038) TCGA-33-4532-01 19 57335871 57335871 G T PEG3 Missense_Mutation p.N51K 0.22 deleterious(0) possibly_damaging(0.754) TCGA-33-4532-01 19 8136935 8136935 G A FBN3 Silent p.H2695H 0.69 TCGA-33-4532-01 19 9213755 9213755 G T OR7G2 Silent p.L76L 0.55 TCGA-33-4532-01 1 100155158 100155158 G C PALMD Missense_Mutation p.D448H 0.05 deleterious(0.03) probably_damaging(0.99) TCGA-33-4532-01 1 110998902 110998902 A T PROK1 Missense_Mutation p.N83Y 0.49 deleterious(0.01) benign(0.384) TCGA-33-4532-01 1 111146539 111146539 G A KCNA2 Missense_Mutation p.S289L 0.27 deleterious(0) probably_damaging(0.991) TCGA-33-4532-01 1 113134205 113134205 C - ST7L Frame_Shift_Del p.E215Kfs*15 0.21 TCGA-33-4532-01 1 114682361 114682361 C A SYT6 Missense_Mutation p.A45S 0.30 tolerated(0.6) benign(0.038) TCGA-33-4532-01 1 115537729 115537729 T C SYCP1 3'UTR 0.60 TCGA-33-4532-01 1 145696563 145696563 C T CD160 3'UTR 0.43 TCGA-33-4532-01 1 153604243 153604243 G A S100A1 Missense_Mutation p.D71N 0.16 deleterious(0.05) probably_damaging(1) TCGA-33-4532-01 1 156622664 156622664 T A BCAN Missense_Mutation p.V641E 0.28 tolerated(0.21) possibly_damaging(0.701) TCGA-33-4532-01 1 15821807 15821807 T C CASP9 Missense_Mutation p.T337A 0.40 deleterious(0) probably_damaging(0.993) TCGA-33-4532-01 1 159169596 159169596 C T CADM3 Silent p.I370I 0.24 TCGA-33-4532-01 1 160281763 160281763 G T COPA Missense_Mutation p.P324Q 0.38 deleterious(0) probably_damaging(0.988) TCGA-33-4532-01 1 167088577 167088577 G A DUSP27 Missense_Mutation p.E177K 0.41 tolerated(0.25) benign(0.105) TCGA-33-4532-01 1 16902816 16902816 G A NBPF1 Nonsense_Mutation p.Q689* 0.04 TCGA-33-4532-01 1 171168503 171168503 G A FMO2 Missense_Mutation p.G168D 0.08 deleterious(0) probably_damaging(0.997) TCGA-33-4532-01 1 173526509 173526509 G T SLC9C2 Silent p.L395L 0.36 TCGA-33-4532-01 1 173916691 173916691 C A RC3H1 Missense_Mutation p.Q851H 0.22 tolerated(0.52) benign(0.002) TCGA-33-4532-01 1 179562999 179562999 G C TDRD5 Missense_Mutation p.A213P 0.43 tolerated(0.05) benign(0.019) TCGA-33-4532-01 1 181764045 181764045 C A CACNA1E Silent p.R2025R 0.31 TCGA-33-4532-01 1 186275939 186275939 C A PRG4 Missense_Mutation p.P363H 0.24 unknown(0) TCGA-33-4532-01 1 190423824 190423824 C T BRINP3 Missense_Mutation p.R66K 0.08 tolerated(0.07) benign(0.01) TCGA-33-4532-01 1 1920058 1920058 C A C1orf222 Missense_Mutation p.L54F 0.46 tolerated(0.23) benign(0.256) TCGA-33-4532-01 1 203696535 203696535 A G ATP2B4 Missense_Mutation p.I1049V 0.48 tolerated(0.38) benign(0.045) TCGA-33-4532-01 1 20517189 20517189 G T UBXN10 Silent p.R45R 0.49 TCGA-33-4532-01 1 216040426 216040426 C G USH2A Missense_Mutation p.G2923A 0.25 probably_damaging(1) TCGA-33-4532-01 1 225147866 225147866 G A DNAH14 Missense_Mutation p.E77K 0.13 tolerated(0.1) benign(0.007) TCGA-33-4532-01 1 228210498 228210498 G A WNT3A Missense_Mutation p.E68K 0.14 tolerated(0.08) probably_damaging(0.954) TCGA-33-4532-01 1 22915561 22915561 G T EPHA8 Missense_Mutation p.V393L 0.28 tolerated(0.07) benign(0.03) TCGA-33-4532-01 1 229462485 229462485 C A CCSAP Missense_Mutation p.E212D 0.08 deleterious(0.01) probably_damaging(0.94) TCGA-33-4532-01 1 230846075 230846075 C A AGT Silent p.R174R 0.28 TCGA-33-4532-01 1 234509501 234509501 G T COA6 Missense_Mutation p.G13W 0.44 deleterious_low_confidence(0.02) unknown(0) TCGA-33-4532-01 1 243471409 243471409 G A SDCCAG8 Missense_Mutation p.A287T 0.11 deleterious(0) possibly_damaging(0.856) TCGA-33-4532-01 1 247654487 247654487 C A OR2W5 RNA 0.26 TCGA-33-4532-01 1 248487077 248487077 T A OR2M7 Missense_Mutation p.H265L 0.45 tolerated(0.17) benign(0) TCGA-33-4532-01 1 28907460 28907460 C G TRNAU1AP 3'Flank 0.14 TCGA-33-4532-01 1 34238179 34238179 C G CSMD2 Missense_Mutation p.G573R 0.24 tolerated(0.54) benign(0.033) TCGA-33-4532-01 1 36563119 36563119 G A COL8A2 3'UTR 0.06 TCGA-33-4532-01 1 36941098 36941098 C T CSF3R Missense_Mutation p.G81R 0.55 deleterious(0) probably_damaging(0.992) TCGA-33-4532-01 1 38274864 38274864 C T C1orf122 3'UTR 0.15 TCGA-33-4532-01 1 39696876 39696876 G C MACF1 Missense_Mutation p.K81N 0.15 possibly_damaging(0.907) TCGA-33-4532-01 1 40131788 40131788 G T NT5C1A Missense_Mutation p.H86N 0.35 tolerated(0.67) benign(0.029) TCGA-33-4532-01 1 40954798 40954798 C G ZFP69 Silent p.T86T 0.12 TCGA-33-4532-01 1 43778111 43778111 G T TIE1 Missense_Mutation p.R589L 0.34 tolerated(0.14) benign(0.351) TCGA-33-4532-01 1 53569154 53569154 G C SLC1A7 Silent p.V187V 0.30 TCGA-33-4532-01 1 57351626 57351626 A T C8A Silent p.T294T 0.44 TCGA-33-4532-01 1 67337155 67337155 T A WDR78 Nonsense_Mutation p.R280* 0.37 TCGA-33-4532-01 1 75038644 75038644 T C C1orf173 Missense_Mutation p.H917R 0.05 tolerated(0.08) benign(0.006) TCGA-33-4532-01 20 13830204 13830204 G T SEL1L2 Missense_Mutation p.P552Q 0.23 deleterious_low_confidence(0.04) benign(0.035) TCGA-33-4532-01 20 13830205 13830205 G T SEL1L2 Missense_Mutation p.P552T 0.22 deleterious_low_confidence(0.01) benign(0.08) TCGA-33-4532-01 20 1546845 1546846 CC A SIRPB1 Frame_Shift_Del p.V385Lfs*16 0.20 TCGA-33-4532-01 20 18370448 18370448 C G DZANK1 Missense_Mutation p.E639Q 0.32 tolerated(0.45) benign(0.122) TCGA-33-4532-01 20 23966534 23966534 C T GGTLC1 Missense_Mutation p.A128T 0.30 deleterious(0.04) benign(0.278) TCGA-33-4532-01 20 3734772 3734772 C A C20orf27 Missense_Mutation p.G178V 0.49 deleterious(0) probably_damaging(0.999) TCGA-33-4532-01 20 4229009 4229009 C T ADRA1D Missense_Mutation p.R199H 0.60 deleterious(0.01) benign(0.283) TCGA-33-4532-01 20 47364384 47364384 C T PREX1 Missense_Mutation p.D85N 0.40 tolerated(0.06) benign(0.415) TCGA-33-4532-01 20 62076081 62076081 C T KCNQ2 Silent p.R207R 0.57 TCGA-33-4532-01 20 62737384 62737384 G A NPBWR2 Silent p.A267A 0.16 TCGA-33-4532-01 21 28338580 28338580 C T ADAMTS5 Missense_Mutation p.R44H 0.69 tolerated_low_confidence(0.38) possibly_damaging(0.467) TCGA-33-4532-01 21 31913917 31913917 G A KRTAP19-6 3'UTR 0.64 TCGA-33-4532-01 21 34051029 34051029 A C SYNJ1 Missense_Mutation p.L518W 0.71 deleterious(0) probably_damaging(1) TCGA-33-4532-01 21 44949625 44949625 C T HSF2BP 3'UTR 0.29 TCGA-33-4532-01 22 19222104 19222104 C G CLTCL1 Silent p.V365V 0.09 TCGA-33-4532-01 22 23101436 23101436 T A IGLV2-14 Silent p.S30S 0.33 TCGA-33-4532-01 22 24036988 24036988 G A RGL4 Intron 0.40 TCGA-33-4532-01 22 26830243 26830243 A T ASPHD2 Missense_Mutation p.N221I 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-33-4532-01 22 28194126 28194126 C A MN1 Missense_Mutation p.L802F 0.31 probably_damaging(0.997) TCGA-33-4532-01 22 29639453 29639453 G A EMID1 Missense_Mutation p.G365E 0.07 deleterious(0) probably_damaging(1) TCGA-33-4532-01 22 35799327 35799327 G T MCM5 Splice_Site p.X98_splice 0.31 TCGA-33-4532-01 22 50926092 50926092 C T MIOX Missense_Mutation p.S33L 0.26 tolerated(0.08) benign(0.038) TCGA-33-4532-01 2 100210027 100210027 G A AFF3 Missense_Mutation p.S724F 0.11 tolerated(0.11) benign(0.004) TCGA-33-4532-01 2 101582167 101582167 C T NPAS2 Silent p.T282T 0.11 TCGA-33-4532-01 2 116599900 116599900 G T DPP10 Missense_Mutation p.Q794H 0.28 deleterious(0.04) possibly_damaging(0.69) TCGA-33-4532-01 2 116599901 116599901 G T DPP10 Nonsense_Mutation p.E795* 0.27 TCGA-33-4532-01 2 120005403 120005403 T C STEAP3 Missense_Mutation p.V224A 0.11 tolerated(0.3) possibly_damaging(0.716) TCGA-33-4532-01 2 122120801 122120801 C T CLASP1 Missense_Mutation p.A1385T 0.08 tolerated(0.24) probably_damaging(1) TCGA-33-4532-01 2 128388470 128388470 T A MYO7B Missense_Mutation p.Y1616N 0.27 tolerated(0.07) possibly_damaging(0.58) TCGA-33-4532-01 2 139310159 139310159 G T SPOPL Missense_Mutation p.D130Y 0.42 tolerated(0.12) probably_damaging(1) TCGA-33-4532-01 2 140990769 140990769 C T LRP1B Missense_Mutation p.E4596K 0.15 benign(0.292) TCGA-33-4532-01 2 1497666 1497666 A G TPO Missense_Mutation p.K621E 0.76 deleterious(0) possibly_damaging(0.522) TCGA-33-4532-01 2 15746377 15746377 C T DDX1 Missense_Mutation p.S269L 0.17 tolerated(0.15) possibly_damaging(0.809) TCGA-33-4532-01 2 166848831 166848831 C T SCN1A Missense_Mutation p.G1652R 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-33-4532-01 2 166892640 166892640 G T SCN1A Missense_Mutation p.P1116Q 0.29 deleterious(0) probably_damaging(1) TCGA-33-4532-01 2 166892641 166892641 G T SCN1A Missense_Mutation p.P1116T 0.29 deleterious(0) probably_damaging(1) TCGA-33-4532-01 2 167141025 167141025 T A SCN9A Missense_Mutation p.M638L 0.31 tolerated(0.97) benign(0.011) TCGA-33-4532-01 2 171509699 171509699 C T MYO3B 3'UTR 0.12 TCGA-33-4532-01 2 171822681 171822681 A G GORASP2 3'UTR 0.51 TCGA-33-4532-01 2 179393015 179393015 G A TTN Missense_Mutation p.S35788F 0.12 TCGA-33-4532-01 2 179544138 179544138 C A TTN Nonsense_Mutation p.E11224* 0.39 TCGA-33-4532-01 2 179621147 179621147 C A TTN Missense_Mutation p.D3686Y 0.25 TCGA-33-4532-01 2 196825142 196825142 C A DNAH7 Missense_Mutation p.E911D 0.37 tolerated(0.37) possibly_damaging(0.464) TCGA-33-4532-01 2 196825143 196825143 T C DNAH7 Missense_Mutation p.E911G 0.37 deleterious(0.01) possibly_damaging(0.78) TCGA-33-4532-01 2 198285797 198285797 C T SF3B1 Missense_Mutation p.A86T 0.34 deleterious(0.02) possibly_damaging(0.698) TCGA-33-4532-01 2 198950232 198950232 G C PLCL1 Missense_Mutation p.C664S 0.42 deleterious(0) probably_damaging(0.992) TCGA-33-4532-01 2 21224540 21224540 T C APOB 3'UTR 0.05 TCGA-33-4532-01 2 21235356 21235356 C T APOB Missense_Mutation p.G1462R 0.10 probably_damaging(0.999) TCGA-33-4532-01 2 215617174 215617174 T A BARD1 Silent p.S558S 0.60 TCGA-33-4532-01 2 24435597 24435597 C A ITSN2 Silent p.R1337R 0.23 TCGA-33-4532-01 2 24435600 24435600 C A ITSN2 Silent p.P1336P 0.24 TCGA-33-4532-01 2 25523041 25523041 C A DNMT3A Silent p.V48V 0.26 TCGA-33-4532-01 2 26684724 26684724 C T OTOF Nonsense_Mutation p.W1791* 0.03 TCGA-33-4532-01 2 33952907 33952907 C A AC009499.1 Intron 0.35 TCGA-33-4532-01 2 48873862 48873862 C A STON1-GTF2A1L Missense_Mutation p.S924Y 0.09 tolerated(0.09) benign(0.116) TCGA-33-4532-01 2 61417463 61417463 T A USP34 Silent p.L3272L 0.67 TCGA-33-4532-01 2 64685607 64685607 C T LGALSL 3'UTR 0.08 TCGA-33-4532-01 2 69350194 69350194 C T ANTXR1 Missense_Mutation p.A283V 0.06 deleterious(0.04) probably_damaging(0.998) TCGA-33-4532-01 2 70441526 70441526 G A TIA1 Missense_Mutation p.P330L 0.27 deleterious(0) probably_damaging(0.996) TCGA-33-4532-01 2 73717751 73717751 G C ALMS1 Missense_Mutation p.E2888Q 0.59 probably_damaging(0.983) TCGA-33-4532-01 2 79363074 79363074 G A REG1P RNA 0.25 TCGA-33-4532-01 2 80529502 80529502 A G LRRTM1 Silent p.A481A 0.24 TCGA-33-4532-01 2 89278130 89278130 T A IGKV3-7 Missense_Mutation p.I69F 0.06 deleterious(0) possibly_damaging(0.574) TCGA-33-4532-01 2 96811163 96811163 C T DUSP2 5'UTR 0.36 TCGA-33-4532-01 3 108211997 108211997 C T MYH15 Missense_Mutation p.A267T 0.07 tolerated(0.97) benign(0.024) TCGA-33-4532-01 3 108229345 108229345 G C MYH15 Silent p.A31A 0.32 TCGA-33-4532-01 3 108229346 108229346 G T MYH15 Missense_Mutation p.A31D 0.32 deleterious(0.03) benign(0.303) TCGA-33-4532-01 3 110840989 110840989 C T PVRL3 Missense_Mutation p.T274I 0.07 tolerated(0.12) possibly_damaging(0.905) TCGA-33-4532-01 3 115560723 115560723 C A LSAMP Silent p.L296L 0.59 TCGA-33-4532-01 3 133098894 133098894 G T TMEM108 Silent p.L113L 0.14 TCGA-33-4532-01 3 134898766 134898766 G T EPHB1 Silent p.R608R 0.19 TCGA-33-4532-01 3 135768131 135768131 T A PPP2R3A Silent p.S799S 0.71 TCGA-33-4532-01 3 142031585 142031585 G A XRN1 Missense_Mutation p.S1558L 0.04 tolerated_low_confidence(0.14) benign(0.043) TCGA-33-4532-01 3 143082377 143082377 G A SLC9A9 Missense_Mutation p.T518M 0.09 deleterious(0.04) probably_damaging(0.91) TCGA-33-4532-01 3 160239695 160239695 G C KPNA4 Missense_Mutation p.L259V 0.13 tolerated(0.1) possibly_damaging(0.897) TCGA-33-4532-01 3 167750493 167750493 C T GOLIM4 Missense_Mutation p.E331K 0.06 deleterious(0.02) possibly_damaging(0.516) TCGA-33-4532-01 3 173996992 173996992 G A NLGN1 Missense_Mutation p.D401N 0.13 tolerated(0.08) probably_damaging(0.941) TCGA-33-4532-01 3 179399767 179399767 G A USP13 Missense_Mutation p.M90I 0.19 deleterious(0.01) benign(0.027) TCGA-33-4532-01 3 179501877 179501877 G T USP13 Missense_Mutation p.R847M 0.06 tolerated(0.06) probably_damaging(0.986) TCGA-33-4532-01 3 193132516 193132516 T A ATP13A4 Nonsense_Mutation p.K956* 0.85 TCGA-33-4532-01 3 193272586 193272586 C T ATP13A4 Translation_Start_Site p.M1? 0.07 deleterious_low_confidence(0) benign(0.001) TCGA-33-4532-01 3 20202407 20202407 C T SGOL1 3'UTR 0.31 TCGA-33-4532-01 3 33617681 33617681 C A CLASP2 Nonsense_Mutation p.E813* 0.84 TCGA-33-4532-01 3 33617682 33617682 C G CLASP2 Missense_Mutation p.E812D 0.84 deleterious(0) probably_damaging(0.989) TCGA-33-4532-01 3 37034586 37034586 G A EPM2AIP1 5'UTR 0.27 TCGA-33-4532-01 3 44611936 44611936 G C ZKSCAN7 Missense_Mutation p.G445A 0.70 deleterious(0.01) possibly_damaging(0.85) TCGA-33-4532-01 3 51263153 51263153 G T DOCK3 Missense_Mutation p.K442N 0.77 deleterious(0) probably_damaging(0.999) TCGA-33-4532-01 3 52485422 52485422 G A TNNC1 Missense_Mutation p.R147C 0.22 deleterious(0) benign(0.398) TCGA-33-4532-01 3 74313618 74313618 C T CNTN3 Silent p.S1007S 0.57 TCGA-33-4532-01 3 77671537 77671537 C A ROBO2 Missense_Mutation p.D1254E 0.15 tolerated(1) benign(0) TCGA-33-4532-01 3 89391229 89391229 C T EPHA3 Missense_Mutation p.T432I 0.66 tolerated(0.06) probably_damaging(0.994) TCGA-33-4532-01 3 93845224 93845224 G T NSUN3 Missense_Mutation p.A305S 0.07 tolerated(0.36) possibly_damaging(0.488) TCGA-33-4532-01 3 97454806 97454806 C T EPHA6 Missense_Mutation p.A991V 0.71 deleterious(0.01) probably_damaging(0.999) TCGA-33-4532-01 4 123333884 123333884 C G ADAD1 Missense_Mutation p.T390S 0.22 deleterious(0.04) probably_damaging(0.966) TCGA-33-4532-01 4 158065105 158065105 C A GLRB Missense_Mutation p.P300T 0.54 deleterious(0.02) probably_damaging(0.977) TCGA-33-4532-01 4 17827057 17827057 G T NCAPG Missense_Mutation p.C509F 0.14 deleterious(0.03) benign(0.15) TCGA-33-4532-01 4 25026481 25026481 G C LGI2 Nonsense_Mutation p.S125* 0.18 TCGA-33-4532-01 4 3189570 3189570 G A HTT Missense_Mutation p.E1728K 0.11 benign(0.027) TCGA-33-4532-01 4 38776273 38776273 G A TLR10 Silent p.Y313Y 0.13 TCGA-33-4532-01 4 52928491 52928491 C G SPATA18 Missense_Mutation p.Q139E 0.55 tolerated(0.06) possibly_damaging(0.764) TCGA-33-4532-01 4 56738082 56738082 C T EXOC1 Silent p.A344A 0.27 TCGA-33-4532-01 4 680322 680322 G A MFSD7 Missense_Mutation p.A98V 0.26 tolerated(0.1) benign(0.039) TCGA-33-4532-01 4 7056107 7056107 G T TADA2B Missense_Mutation p.V197L 0.39 tolerated(0.89) benign(0.001) TCGA-33-4532-01 4 727706 727706 G C PCGF3 Intron 0.21 TCGA-33-4532-01 4 8621244 8621244 G T CPZ Missense_Mutation p.R620L 0.47 tolerated(0.27) benign(0.073) TCGA-33-4532-01 4 90856839 90856839 G A MMRN1 Missense_Mutation p.E670K 0.73 deleterious(0.04) probably_damaging(0.998) TCGA-33-4532-01 4 96762275 96762275 G T PDHA2 Missense_Mutation p.S325I 0.20 tolerated(0.39) probably_damaging(0.919) TCGA-33-4532-01 5 11236820 11236820 T G CTNND2 Missense_Mutation p.N582H 0.46 deleterious(0.03) possibly_damaging(0.819) TCGA-33-4532-01 5 140208933 140208933 G C PCDHA6 Silent p.S419S 0.13 TCGA-33-4532-01 5 140730487 140730487 C T PCDHGB1 Silent p.S220S 0.15 TCGA-33-4532-01 5 140768219 140768219 C T PCDHGB4 Silent p.Y256Y 0.73 TCGA-33-4532-01 5 150278081 150278081 G A ZNF300 Silent p.F33F 0.15 TCGA-33-4532-01 5 168201350 168201350 C A SLIT3 Silent p.R395R 0.70 TCGA-33-4532-01 5 168201351 168201351 C A SLIT3 Missense_Mutation p.R395L 0.70 deleterious(0) probably_damaging(0.999) TCGA-33-4532-01 5 176931128 176931128 C T DOK3 Silent p.L449L 0.75 TCGA-33-4532-01 5 19747337 19747337 G T CDH18 Silent p.S79S 0.08 TCGA-33-4532-01 5 23524582 23524582 G T PRDM9 Nonsense_Mutation p.E364* 0.48 TCGA-33-4532-01 5 34687014 34687014 A G RAI14 5'UTR 0.22 TCGA-33-4532-01 5 40959652 40959652 G C C7 Missense_Mutation p.G531R 0.32 deleterious(0) probably_damaging(0.993) TCGA-33-4532-01 5 41805702 41805702 T C OXCT1 Missense_Mutation p.R308G 0.51 deleterious(0.01) probably_damaging(0.999) TCGA-33-4532-01 5 45262720 45262720 C A HCN1 Missense_Mutation p.R659L 0.39 tolerated_low_confidence(0.42) benign(0) TCGA-33-4532-01 5 60188661 60188661 T A ERCC8 Intron 0.65 TCGA-33-4532-01 5 7897251 7897251 G T MTRR Missense_Mutation p.V642F 0.30 tolerated(0.05) benign(0.025) TCGA-33-4532-01 6 133050112 133050112 G T VNN3 Intron 0.31 TCGA-33-4532-01 6 133052588 133052588 T A VNN3 Intron 0.15 TCGA-33-4532-01 6 138196127 138196127 C G TNFAIP3 Silent p.L147L 0.15 TCGA-33-4532-01 6 138428527 138428527 G A PERP 5'UTR 0.24 TCGA-33-4532-01 6 144768801 144768801 G A UTRN Missense_Mutation p.D596N 0.17 deleterious(0.03) probably_damaging(0.971) TCGA-33-4532-01 6 147636666 147636666 T G STXBP5 Nonsense_Mutation p.L473* 0.43 TCGA-33-4532-01 6 152536168 152536168 C A SYNE1 Missense_Mutation p.A7407S 0.36 benign(0.014) TCGA-33-4532-01 6 152536169 152536169 C A SYNE1 Missense_Mutation p.M7406I 0.36 benign(0.063) TCGA-33-4532-01 6 170627660 170627695 CCCTGAATCCAGGCGAGAAGTTCCCATGTGTTCAGA - FAM120B In_Frame_Del p.S397_E408del 0.15 TCGA-33-4532-01 6 31778147 31778147 T A HSPA1L Missense_Mutation p.R535W 0.44 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-33-4532-01 6 31827543 31827543 T A NEU1 Missense_Mutation p.T401S 0.34 tolerated(0.39) benign(0.062) TCGA-33-4532-01 6 3324141 3324141 C T SLC22A23 Missense_Mutation p.A337T 0.26 deleterious(0.05) possibly_damaging(0.509) TCGA-33-4532-01 6 33405906 33405906 A G SYNGAP1 Silent p.T408T 0.32 TCGA-33-4532-01 6 38754631 38754631 C G DNAH8 Missense_Mutation p.T612S 0.33 benign(0.129) TCGA-33-4532-01 6 38879313 38879313 T A DNAH8 Nonsense_Mutation p.Y3053* 0.29 TCGA-33-4532-01 6 42789780 42789780 C T GLTSCR1L Missense_Mutation p.S7L 0.05 deleterious(0.05) unknown(0) TCGA-33-4532-01 6 70669889 70669889 G A COL19A1 Missense_Mutation p.G313D 0.28 deleterious(0) unknown(0) TCGA-33-4532-01 6 7862565 7862565 G T BMP6 Silent p.L346L 0.26 TCGA-33-4532-01 6 87971382 87971382 G T ZNF292 Nonsense_Mutation p.E2679* 0.31 TCGA-33-4532-01 6 91263282 91263282 C A MAP3K7 Missense_Mutation p.D211Y 0.38 deleterious(0) probably_damaging(0.995) TCGA-33-4532-01 7 100452291 100452291 G T SLC12A9 Silent p.L77L 0.41 TCGA-33-4532-01 7 100682800 100682800 C G MUC17 Silent p.T2701T 0.13 TCGA-33-4532-01 7 100841537 100841537 G A MOGAT3 Silent p.V201V 0.13 TCGA-33-4532-01 7 101006372 101006372 C T COL26A1 Missense_Mutation p.A20V 0.27 tolerated(0.22) possibly_damaging(0.878) TCGA-33-4532-01 7 103838219 103838219 T C ORC5 Missense_Mutation p.D132G 0.57 deleterious(0.01) possibly_damaging(0.805) TCGA-33-4532-01 7 106508006 106508006 C A PIK3CG 5'UTR 0.43 TCGA-33-4532-01 7 107418637 107418637 G C SLC26A3 Missense_Mutation p.I499M 0.43 deleterious(0) possibly_damaging(0.834) TCGA-33-4532-01 7 11078436 11078436 G A PHF14 Missense_Mutation p.S677N 0.17 tolerated(0.78) benign(0.001) TCGA-33-4532-01 7 111405235 111405235 C A DOCK4 Missense_Mutation p.R1311L 0.50 deleterious(0) probably_damaging(0.999) TCGA-33-4532-01 7 117876971 117876971 G A ANKRD7 Missense_Mutation p.V235I 0.43 tolerated(0.16) benign(0.007) TCGA-33-4532-01 7 120478828 120478828 T C TSPAN12 Intron 0.31 TCGA-33-4532-01 7 140287512 140287512 T G DENND2A Missense_Mutation p.Q355P 0.27 tolerated(0.06) benign(0.421) TCGA-33-4532-01 7 142626552 142626552 C T TRPV5 Missense_Mutation p.R153H 0.41 tolerated(0.31) benign(0.021) TCGA-33-4532-01 7 142724138 142724138 C T OR9A2 Missense_Mutation p.A28T 0.19 tolerated(0.33) benign(0.033) TCGA-33-4532-01 7 149475964 149475964 T C SSPO RNA 0.29 TCGA-33-4532-01 7 149489487 149489487 G C SSPO RNA 0.31 TCGA-33-4532-01 7 150741298 150741298 G A ABCB8 Missense_Mutation p.R669H 0.27 tolerated(0.06) benign(0.005) TCGA-33-4532-01 7 150748977 150748977 C T ASIC3 Missense_Mutation p.S432L 0.12 deleterious(0) possibly_damaging(0.574) TCGA-33-4532-01 7 150864346 150864346 G C GBX1 Missense_Mutation p.S97W 0.21 deleterious(0.01) probably_damaging(0.945) TCGA-33-4532-01 7 21723437 21723437 A T DNAH11 Missense_Mutation p.Q1839H 0.46 probably_damaging(1) TCGA-33-4532-01 7 2255539 2255539 C A MAD1L1 Missense_Mutation p.G302V 0.35 tolerated(0.25) benign(0.005) TCGA-33-4532-01 7 2255540 2255540 C A MAD1L1 Missense_Mutation p.G302C 0.36 deleterious(0.04) possibly_damaging(0.684) TCGA-33-4532-01 7 35050089 35050089 G T DPY19L1 Missense_Mutation p.T179K 0.26 deleterious(0.03) possibly_damaging(0.821) TCGA-33-4532-01 7 39247091 39247091 C A POU6F2 Missense_Mutation p.A128E 0.15 deleterious(0) probably_damaging(0.992) TCGA-33-4532-01 7 42005725 42005725 C A GLI3 Silent p.G982G 0.45 TCGA-33-4532-01 7 48431646 48431646 A G ABCA13 Missense_Mutation p.D3928G 0.12 probably_damaging(0.986) TCGA-33-4532-01 7 71252808 71252808 A G CALN1 Silent p.S246S 0.08 TCGA-33-4532-01 7 76916837 76916837 C A CCDC146 Missense_Mutation p.D786E 0.43 tolerated(0.2) benign(0.053) TCGA-33-4532-01 7 99779815 99779815 G A STAG3 Silent p.P73P 0.06 TCGA-33-4532-01 8 104987664 104987664 G T RIMS2 Missense_Mutation p.G953W 0.34 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-33-4532-01 8 109455858 109455858 C G EMC2 5'UTR 0.20 TCGA-33-4532-01 8 109796386 109796386 C A TMEM74 3'UTR 0.46 TCGA-33-4532-01 8 118184946 118184946 A C SLC30A8 3'UTR 0.11 TCGA-33-4532-01 8 139833462 139833462 G T COL22A1 Missense_Mutation p.L388I 0.42 unknown(0) TCGA-33-4532-01 8 139890388 139890388 G A COL22A1 Missense_Mutation p.T88M 0.07 unknown(0) TCGA-33-4532-01 8 140631068 140631068 G A KCNK9 Silent p.F186F 0.07 TCGA-33-4532-01 8 16884802 16884802 G C MICU3 Missense_Mutation p.R5P 0.17 deleterious_low_confidence(0) benign(0.055) TCGA-33-4532-01 8 17512165 17512165 A C MTUS1 Nonsense_Mutation p.L1040* 0.72 TCGA-33-4532-01 8 19177078 19177078 C T SH2D4A Missense_Mutation p.S7L 0.15 deleterious(0.01) benign(0.158) TCGA-33-4532-01 8 25203000 25203000 A T DOCK5 Missense_Mutation p.E876V 0.19 tolerated(0.1) possibly_damaging(0.453) TCGA-33-4532-01 8 30210598 30210598 C T TUBBP1 RNA 0.20 TCGA-33-4532-01 8 39564308 39564308 G T ADAM18 Splice_Site p.X635_splice 0.65 TCGA-33-4532-01 8 41522352 41522352 T C ANK1 Intron 0.39 TCGA-33-4532-01 8 42868200 42868200 C T HOOK3 Missense_Mutation p.R616C 0.45 deleterious(0) probably_damaging(0.998) TCGA-33-4532-01 8 43173651 43173651 A T POTEA RNA 0.08 TCGA-33-4532-01 8 55540455 55540455 T C RP1 Missense_Mutation p.V1338A 0.39 tolerated(0.46) benign(0.004) TCGA-33-4532-01 8 59506795 59506795 G A NSMAF Silent p.S680S 0.36 TCGA-33-4532-01 8 61655205 61655205 C T CHD7 Missense_Mutation p.P405L 0.10 benign(0) TCGA-33-4532-01 8 61769073 61769073 G C CHD7 Missense_Mutation p.E2412Q 0.06 possibly_damaging(0.823) TCGA-33-4532-01 8 70514019 70514019 G A SULF1 Missense_Mutation p.R339H 0.10 deleterious(0) probably_damaging(0.994) TCGA-33-4532-01 8 70540420 70540420 A T SULF1 Missense_Mutation p.E686V 0.45 tolerated(0.2) benign(0.085) TCGA-33-4532-01 8 86240763 86240763 G A CA1 3'UTR 0.10 TCGA-33-4532-01 8 8748528 8748528 G T MFHAS1 Missense_Mutation p.L681I 0.64 tolerated(0.1) probably_damaging(0.991) TCGA-33-4532-01 8 87588256 87588256 C G CNGB3 Missense_Mutation p.E736Q 0.26 tolerated(0.39) benign(0.032) TCGA-33-4532-01 8 89053599 89053599 C A MMP16 3'UTR 0.52 TCGA-33-4532-01 8 89339553 89339553 G T MMP16 5'UTR 0.43 TCGA-33-4532-01 9 125486622 125486622 T C OR1L4 Silent p.S118S 0.20 TCGA-33-4532-01 9 125941312 125941312 T C STRBP Silent p.K66K 0.15 TCGA-33-4532-01 9 126414402 126414402 T A DENND1A Nonsense_Mutation p.R170* 0.38 TCGA-33-4532-01 9 128122903 128122903 A G GAPVD1 Missense_Mutation p.R1408G 0.77 deleterious(0) probably_damaging(0.958) TCGA-33-4532-01 9 135202917 135202917 G C SETX Silent p.P1356P 0.16 TCGA-33-4532-01 9 139902942 139902942 G A ABCA2 Missense_Mutation p.R2401W 0.75 deleterious_low_confidence(0) unknown(0) TCGA-33-4532-01 9 139911420 139911420 C A ABCA2 Missense_Mutation p.A904S 0.71 tolerated(0.17) benign(0.168) TCGA-33-4532-01 9 21350654 21350654 G A IFNA6 Missense_Mutation p.S78F 0.37 tolerated(0.08) benign(0.033) TCGA-33-4532-01 9 27229209 27229209 T C TEK Silent p.C1118C 0.03 TCGA-33-4532-01 9 37516034 37516034 G A FBXO10 Missense_Mutation p.R855W 0.11 tolerated(0.15) possibly_damaging(0.553) TCGA-33-4532-01 9 37731012 37731012 G T FRMPD1 Missense_Mutation p.R257L 0.36 deleterious(0) probably_damaging(0.999) TCGA-33-4532-01 9 43140749 43140749 C G RP11-327I22.6 RNA 0.14 TCGA-33-4532-01 9 5078317 5078317 C T JAK2 Silent p.T668T 0.31 TCGA-33-4532-01 9 6984351 6984351 C T KDM4C Missense_Mutation p.S434F 0.56 deleterious(0.04) benign(0.002) TCGA-33-4532-01 9 72962528 72962528 G C SMC5 Splice_Site p.X889_splice 0.74 TCGA-33-4532-01 9 77257578 77257578 C T RORB Nonsense_Mutation p.Q162* 0.16 TCGA-33-4532-01 9 77286791 77286791 C T RORB Missense_Mutation p.H400Y 0.38 deleterious(0) possibly_damaging(0.893) TCGA-33-4532-01 X 102192907 102192907 C A RAB40AL Missense_Mutation p.H221N 0.55 tolerated_low_confidence(0.09) possibly_damaging(0.781) TCGA-33-4532-01 X 110435802 110435802 C T PAK3 Silent p.V352V 0.19 TCGA-33-4532-01 X 118230556 118230556 G T KIAA1210 Missense_Mutation p.F389L 0.90 deleterious(0) benign(0.38) TCGA-33-4532-01 X 138857060 138857060 T A ATP11C Nonsense_Mutation p.K672* 0.16 TCGA-33-4532-01 X 139038093 139038093 A T CXorf66 Missense_Mutation p.Y350N 0.78 tolerated(0.31) possibly_damaging(0.683) TCGA-33-4532-01 X 144329181 144329181 G T SPANXN1 Missense_Mutation p.E25D 0.78 tolerated(0.24) benign(0.423) TCGA-33-4532-01 X 151092185 151092185 G C MAGEA4 Missense_Mutation p.E17Q 0.10 tolerated(1) benign(0.173) TCGA-33-4532-01 X 151870230 151870230 G C MAGEA6 Missense_Mutation p.W307S 0.84 deleterious(0.01) benign(0.011) TCGA-33-4532-01 X 152818709 152818709 G A ATP2B3 Silent p.E680E 0.10 TCGA-33-4532-01 X 2864051 2864051 C T ARSE Missense_Mutation p.D327N 0.33 deleterious(0) probably_damaging(1) TCGA-33-4532-01 X 48780398 48780398 C A OTUD5 3'UTR 0.72 TCGA-33-4532-01 X 53574823 53574823 T C HUWE1 Missense_Mutation p.T3483A 0.93 unknown(0) TCGA-33-4532-01 X 65480022 65480022 T C HEPH Silent p.P1093P 0.77 TCGA-33-4532-01 X 73062730 73062730 A G XIST RNA 0.88 TCGA-33-4532-01 X 73064108 73064108 A G XIST RNA 0.85 TCGA-33-4532-01 X 78216990 78216990 C A P2RY10 Missense_Mutation p.R325S 0.88 deleterious(0.04) benign(0.048) TCGA-33-4532-01 Y 4967120 4967120 T A PCDH11Y Missense_Mutation p.S501T 0.60 tolerated(0.25) benign(0.253) TCGA-33-4533-01 10 103826716 103826716 G T HPS6 Missense_Mutation p.R495S 0.71 tolerated(0.09) benign(0.294) TCGA-33-4533-01 10 105932195 105932195 A T WDR96 Missense_Mutation p.H853Q 0.74 tolerated(1) benign(0.002) TCGA-33-4533-01 10 128019004 128019004 G T ADAM12 Missense_Mutation p.P55T 0.79 tolerated(0.42) possibly_damaging(0.756) TCGA-33-4533-01 10 131958274 131958274 G T GLRX3 Missense_Mutation p.V73F 0.72 tolerated(0.21) benign(0.422) TCGA-33-4533-01 10 134648195 134648195 G T TTC40 Missense_Mutation p.Q2277K 0.62 tolerated(1) benign(0.001) TCGA-33-4533-01 10 16563058 16563058 G T C1QL3 Missense_Mutation p.L3M 0.86 deleterious_low_confidence(0) benign(0.027) TCGA-33-4533-01 10 17369080 17369080 C T ST8SIA6 Missense_Mutation p.G190R 0.70 deleterious(0) probably_damaging(1) TCGA-33-4533-01 10 25701176 25701176 C G GPR158 Intron 0.66 TCGA-33-4533-01 10 30317316 30317316 C T KIAA1462 Silent p.V587V 0.48 TCGA-33-4533-01 10 50818900 50818900 C G SLC18A3 Missense_Mutation p.I38M 0.33 deleterious(0) probably_damaging(0.978) TCGA-33-4533-01 10 60124635 60124635 A T UBE2D1 Missense_Mutation p.K101N 0.25 deleterious_low_confidence(0.03) possibly_damaging(0.457) TCGA-33-4533-01 10 70960234 70960234 G A SUPV3L1 Silent p.K499K 0.08 TCGA-33-4533-01 10 73767080 73767080 C A CHST3 Silent p.L97L 0.15 TCGA-33-4533-01 10 7659226 7659226 T A ITIH5 Silent p.P224P 0.83 TCGA-33-4533-01 10 87966225 87966225 T C GRID1 Missense_Mutation p.Y139C 0.73 deleterious(0) probably_damaging(0.999) TCGA-33-4533-01 10 96612635 96612635 C - CYP2C19 Frame_Shift_Del p.P480Rfs*54 0.47 TCGA-33-4533-01 10 98412549 98412549 C T PIK3AP1 Silent p.V206V 0.65 TCGA-33-4533-01 10 99359443 99359443 G C HOGA1 Missense_Mutation p.D159H 0.24 deleterious(0) probably_damaging(0.97) TCGA-33-4533-01 11 123886786 123886786 G T OR10G4 Nonsense_Mutation p.G169* 0.61 TCGA-33-4533-01 11 124253171 124253171 G T OR8B2 Missense_Mutation p.F23L 0.23 tolerated_low_confidence(1) benign(0) TCGA-33-4533-01 11 124267179 124267179 G T OR8B3 Missense_Mutation p.F23L 0.75 tolerated_low_confidence(1) benign(0) TCGA-33-4533-01 11 4936530 4936530 A G OR51G2 Missense_Mutation p.S122P 0.73 deleterious(0.04) probably_damaging(0.998) TCGA-33-4533-01 11 56143250 56143250 G T OR8U1 Missense_Mutation p.A51S 0.63 tolerated(0.09) benign(0.002) TCGA-33-4533-01 11 57004147 57004148 AC T APLNR Frame_Shift_Del p.V111Tfs*22 0.57 TCGA-33-4533-01 11 57947664 57947664 T C OR9Q1 Missense_Mutation p.F250L 0.69 tolerated(0.06) probably_damaging(0.999) TCGA-33-4533-01 11 6048462 6048462 C T OR56A1 Missense_Mutation p.R158Q 0.69 deleterious(0.04) benign(0.007) TCGA-33-4533-01 11 60739203 60739203 G C CD6 5'UTR 0.80 TCGA-33-4533-01 11 66483365 66483365 T C SPTBN2 Missense_Mutation p.Y82C 0.74 deleterious(0) probably_damaging(1) TCGA-33-4533-01 11 73717342 73717342 C T UCP3 Missense_Mutation p.R70Q 0.74 deleterious(0) benign(0.304) TCGA-33-4533-01 11 89531247 89531247 G - TRIM49 3'UTR 0.32 TCGA-33-4533-01 12 101520783 101520783 C A ANO4 Missense_Mutation p.R900S 0.62 tolerated(0.19) possibly_damaging(0.584) TCGA-33-4533-01 12 11183530 11183530 C A TAS2R31 Silent p.G135G 0.40 TCGA-33-4533-01 12 114793441 114793441 G A TBX5 Missense_Mutation p.P485S 0.65 tolerated(0.2) benign(0) TCGA-33-4533-01 12 20876065 20876065 T G SLCO1C1 Missense_Mutation p.Y355D 0.73 deleterious(0) probably_damaging(0.998) TCGA-33-4533-01 12 30783889 30783889 C T IPO8 Missense_Mutation p.A1007T 0.70 tolerated(0.07) benign(0.039) TCGA-33-4533-01 12 40745484 40745484 C A LRRK2 Missense_Mutation p.D2175E 0.71 tolerated(0.63) benign(0.002) TCGA-33-4533-01 12 41337799 41337799 C T CNTN1 Missense_Mutation p.P504S 0.75 tolerated(0.2) benign(0.003) TCGA-33-4533-01 12 54905761 54905761 C T NCKAP1L Silent p.L271L 0.36 TCGA-33-4533-01 12 62785030 62785030 G A USP15 Missense_Mutation p.G685E 0.46 tolerated(0.39) benign(0.017) TCGA-33-4533-01 12 86374004 86374004 C T MGAT4C Missense_Mutation p.G167E 0.36 deleterious(0) probably_damaging(0.999) TCGA-33-4533-01 12 9268360 9268360 G T A2M Missense_Mutation p.P29Q 0.65 deleterious(0) possibly_damaging(0.695) TCGA-33-4533-01 12 96104392 96104392 C G NTN4 Missense_Mutation p.G336A 0.78 deleterious(0) probably_damaging(0.909) TCGA-33-4533-01 13 36050299 36050299 A T MAB21L1 5'UTR 0.47 TCGA-33-4533-01 13 48916733 48916733 A G RB1 Splice_Site p.X89_splice 0.80 TCGA-33-4533-01 13 67800906 67800906 G T PCDH9 Missense_Mutation p.A556E 0.73 deleterious(0) probably_damaging(0.993) TCGA-33-4533-01 14 19378237 19378237 A G OR11H12 Missense_Mutation p.Y215C 0.16 tolerated(0.14) probably_damaging(0.95) TCGA-33-4533-01 14 20248790 20248790 C T OR4M1 Silent p.F103F 0.32 TCGA-33-4533-01 14 20295820 20295820 A G OR4N2 Silent p.A71A 0.12 TCGA-33-4533-01 14 20666364 20666364 C A OR11G2 Nonsense_Mutation p.Y290* 0.27 TCGA-33-4533-01 14 20854783 20854783 C G TEP1 Splice_Site p.X895_splice 0.30 TCGA-33-4533-01 14 21623814 21623814 T A OR5AU1 Missense_Mutation p.Y124F 0.50 deleterious(0.03) possibly_damaging(0.763) TCGA-33-4533-01 14 21624025 21624025 C A OR5AU1 Missense_Mutation p.G54W 0.27 deleterious(0.02) possibly_damaging(0.624) TCGA-33-4533-01 14 23521275 23521275 C T CDH24 Missense_Mutation p.E461K 0.33 tolerated(0.56) benign(0.003) TCGA-33-4533-01 14 26949180 26949180 C A NOVA1 Intron 0.23 TCGA-33-4533-01 14 31858164 31858164 C A HEATR5A Nonsense_Mutation p.E274* 0.35 TCGA-33-4533-01 14 34395080 34395080 C T EGLN3 3'UTR 0.22 TCGA-33-4533-01 14 42356796 42356796 C G LRFN5 Missense_Mutation p.P323R 0.32 deleterious(0.01) probably_damaging(0.942) TCGA-33-4533-01 14 44975893 44975893 C T FSCB Missense_Mutation p.D100N 0.48 tolerated(1) benign(0.054) TCGA-33-4533-01 14 52735279 52735279 C A PTGDR Missense_Mutation p.D249E 0.28 tolerated(1) benign(0.004) TCGA-33-4533-01 14 53619162 53619162 T A DDHD1 Missense_Mutation p.T219S 0.29 tolerated(0.64) benign(0.001) TCGA-33-4533-01 14 65263341 65263341 C A SPTB Silent p.R425R 0.24 TCGA-33-4533-01 14 70713934 70713934 G A ADAM21P1 RNA 0.11 TCGA-33-4533-01 14 76906013 76906013 G A ESRRB Missense_Mutation p.C106Y 0.27 deleterious(0) probably_damaging(1) TCGA-33-4533-01 14 96777896 96777896 C T ATG2B Missense_Mutation p.D1325N 0.10 tolerated(0.46) benign(0.037) TCGA-33-4533-01 15 22369109 22369109 C T OR4M2 Silent p.F178F 0.20 TCGA-33-4533-01 15 22369110 22369110 T G OR4M2 Missense_Mutation p.C179G 0.19 deleterious(0) probably_damaging(0.999) TCGA-33-4533-01 15 22369111 22369111 G T OR4M2 Missense_Mutation p.C179F 0.19 deleterious(0) probably_damaging(1) TCGA-33-4533-01 15 28356897 28356897 C T HERC2 3'UTR 0.70 TCGA-33-4533-01 15 28544607 28544607 C A HERC2 Missense_Mutation p.G43V 0.73 possibly_damaging(0.522) TCGA-33-4533-01 15 28544608 28544608 C T HERC2 Missense_Mutation p.G43R 0.72 possibly_damaging(0.459) TCGA-33-4533-01 15 31196869 31196869 G A FAN1 Translation_Start_Site p.M1? 0.74 tolerated_low_confidence(0.22) benign(0.003) TCGA-33-4533-01 15 40954333 40954333 G T CASC5 Missense_Mutation p.V2326L 0.77 tolerated(0.08) benign(0.393) TCGA-33-4533-01 15 48414135 48414135 G T SLC24A5 Missense_Mutation p.G68V 0.73 deleterious(0) benign(0.348) TCGA-33-4533-01 15 74467980 74467980 G T ISLR Missense_Mutation p.G261W 0.60 deleterious(0) probably_damaging(1) TCGA-33-4533-01 15 75684663 75684663 C G SIN3A Missense_Mutation p.R924T 0.29 deleterious(0.03) possibly_damaging(0.701) TCGA-33-4533-01 15 89010913 89010913 G T MRPS11 5'UTR 0.74 TCGA-33-4533-01 16 107122 107122 C T SNRNP25 Silent p.I126I 0.14 TCGA-33-4533-01 16 2153488 2153488 G T PKD1 Missense_Mutation p.A2857D 0.14 benign(0.101) TCGA-33-4533-01 16 23546569 23546569 C T EARS2 Missense_Mutation p.D200N 0.12 deleterious(0) probably_damaging(1) TCGA-33-4533-01 16 31087665 31087665 C T ZNF646 Missense_Mutation p.S7L 0.13 tolerated_low_confidence(0.22) benign(0.088) TCGA-33-4533-01 16 31090223 31090223 C T ZNF646 Silent p.L860L 0.18 TCGA-33-4533-01 16 31090538 31090538 C T ZNF646 Nonsense_Mutation p.Q965* 0.08 TCGA-33-4533-01 16 31091162 31091162 G A ZNF646 Missense_Mutation p.E1173K 0.17 tolerated(0.07) benign(0.002) TCGA-33-4533-01 16 31091640 31091640 C A ZNF646 Missense_Mutation p.P1332H 0.09 deleterious(0.02) probably_damaging(0.998) TCGA-33-4533-01 16 3119009 3119009 G C IL32 Missense_Mutation p.E74Q 0.35 tolerated(0.4) possibly_damaging(0.719) TCGA-33-4533-01 16 4790471 4790471 C T C16orf71 Silent p.A198A 0.68 TCGA-33-4533-01 16 48117381 48117381 G T ABCC12 3'UTR 0.44 TCGA-33-4533-01 16 4882911 4882911 G A GLYR1 Missense_Mutation p.A53V 0.72 deleterious(0) probably_damaging(0.984) TCGA-33-4533-01 16 52472835 52472835 C T TOX3 3'UTR 0.68 TCGA-33-4533-01 16 66949990 66949990 C T CDH16 Silent p.R134R 0.71 TCGA-33-4533-01 16 70913645 70913645 G A HYDIN Silent p.I3410I 0.35 TCGA-33-4533-01 17 10348590 10348590 G A MYH4 Silent p.R1753R 0.77 TCGA-33-4533-01 17 10427947 10427947 C A MYH2 Nonsense_Mutation p.E1671* 0.66 TCGA-33-4533-01 17 10427948 10427948 C A MYH2 Missense_Mutation p.Q1670H 0.67 tolerated(0.16) benign(0.012) TCGA-33-4533-01 17 20907656 20907657 AG - USP22 Frame_Shift_Del p.L465Vfs*5 0.58 TCGA-33-4533-01 17 21319284 21319284 C T KCNJ12 Silent p.C210C 0.31 TCGA-33-4533-01 17 29253826 29253826 G T ADAP2 Intron 0.78 TCGA-33-4533-01 17 29664885 29664885 G T NF1 Nonsense_Mutation p.E2231* 0.69 TCGA-33-4533-01 17 30315405 30315405 G T SUZ12 Nonsense_Mutation p.E364* 0.77 TCGA-33-4533-01 17 3324813 3324813 C A OR3A3 Silent p.R318R 0.77 TCGA-33-4533-01 17 33680554 33680554 T A SLFN11 Missense_Mutation p.N575Y 0.54 deleterious(0) probably_damaging(0.951) TCGA-33-4533-01 17 46620385 46620385 G A HOXB2 3'UTR 0.68 TCGA-33-4533-01 17 67022584 67022585 - A ABCA9 Frame_Shift_Ins p.G692Vfs*13 0.58 TCGA-33-4533-01 17 72860310 72860310 C A FDXR Missense_Mutation p.R364L 0.68 tolerated(0.15) benign(0.042) TCGA-33-4533-01 17 73623274 73623274 C A RECQL5 3'UTR 0.78 TCGA-33-4533-01 17 7577046 7577046 C A TP53 Nonsense_Mutation p.E298* 0.72 TCGA-33-4533-01 17 76993183 76993183 A G CANT1 Silent p.N174N 0.74 TCGA-33-4533-01 18 12274250 12274250 C T CIDEA Silent p.C163C 0.42 TCGA-33-4533-01 18 14791414 14791414 G T ANKRD30B Silent p.T583T 0.31 TCGA-33-4533-01 18 32409029 32409029 C A DTNA Intron 0.28 TCGA-33-4533-01 18 33779713 33779713 G T MOCOS Missense_Mutation p.A123S 0.42 tolerated(0.18) probably_damaging(0.968) TCGA-33-4533-01 18 44586020 44586020 C T KATNAL2 Nonsense_Mutation p.R110* 0.33 TCGA-33-4533-01 18 47799999 47799999 C - MBD1 Frame_Shift_Del p.E461Kfs*29 0.28 TCGA-33-4533-01 18 47800013 47800013 A C MBD1 Missense_Mutation p.L456R 0.39 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-33-4533-01 18 48703429 48703429 C A MEX3C Silent p.A424A 0.22 TCGA-33-4533-01 18 5395670 5395670 T A EPB41L3 Missense_Mutation p.M1004L 0.32 tolerated(0.51) possibly_damaging(0.5) TCGA-33-4533-01 18 5434020 5434020 C A EPB41L3 Nonsense_Mutation p.E236* 0.42 TCGA-33-4533-01 18 580811 580811 G A CETN1 Missense_Mutation p.E135K 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-33-4533-01 18 67855446 67855446 C T RTTN Silent p.V401V 0.38 TCGA-33-4533-01 18 74980742 74980742 A - GALR1 Frame_Shift_Del p.K312Rfs*17 0.26 TCGA-33-4533-01 18 76752199 76752199 C T SALL3 Nonsense_Mutation p.Q70* 0.33 TCGA-33-4533-01 19 15349185 15349185 C G BRD4 3'UTR 0.26 TCGA-33-4533-01 19 15538134 15538134 C A WIZ Missense_Mutation p.G247V 0.41 tolerated(0.08) benign(0.007) TCGA-33-4533-01 19 21133024 21133024 T C ZNF85 Silent p.C568C 0.41 TCGA-33-4533-01 19 21240490 21240490 G T ZNF430 Missense_Mutation p.C459F 0.24 deleterious(0) probably_damaging(0.999) TCGA-33-4533-01 19 22939415 22939415 T A ZNF99 3'Flank 0.85 TCGA-33-4533-01 19 22939499 22939499 T A ZNF99 3'Flank 0.58 TCGA-33-4533-01 19 22939797 22939797 A T ZNF99 3'Flank 0.44 TCGA-33-4533-01 19 23328898 23328898 G C ZNF730 Missense_Mutation p.R351P 0.36 tolerated(0.16) benign(0.335) TCGA-33-4533-01 19 23836845 23836845 G A ZNF675 Missense_Mutation p.S297L 0.24 deleterious(0.01) possibly_damaging(0.528) TCGA-33-4533-01 19 2807757 2807757 G A THOP1 Missense_Mutation p.A402T 0.12 tolerated(0.68) benign(0.005) TCGA-33-4533-01 19 35837637 35837637 G A CD22 3'UTR 0.41 TCGA-33-4533-01 19 36042008 36042008 T G ATP4A Missense_Mutation p.K964T 0.42 tolerated(0.19) benign(0.126) TCGA-33-4533-01 19 3641803 3641803 G A PIP5K1C Nonsense_Mutation p.Q563* 0.41 TCGA-33-4533-01 19 36940084 36940084 C A ZNF566 Missense_Mutation p.G352V 0.39 tolerated(0.14) benign(0.043) TCGA-33-4533-01 19 38924402 38924402 C T RYR1 5'Flank 0.47 TCGA-33-4533-01 19 39913469 39913469 C T PLEKHG2 Missense_Mutation p.S592L 0.32 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-33-4533-01 19 42813770 42813770 C G PRR19 Missense_Mutation p.Q12E 0.16 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-33-4533-01 19 46974186 46974186 T A PNMAL1 Missense_Mutation p.Q36L 0.32 deleterious(0.01) benign(0.145) TCGA-33-4533-01 19 47879705 47879705 C - DHX34 Frame_Shift_Del p.H830Tfs*43 0.27 TCGA-33-4533-01 19 48517489 48517489 C A ELSPBP1 Silent p.T44T 0.42 TCGA-33-4533-01 19 48967528 48967528 G A KCNJ14 Missense_Mutation p.V269M 0.41 deleterious(0) probably_damaging(0.999) TCGA-33-4533-01 19 50099158 50099158 G A PRR12 Silent p.Q522Q 0.44 TCGA-33-4533-01 19 50248526 50248526 G C TSKS Missense_Mutation p.R374G 0.35 tolerated(0.19) possibly_damaging(0.813) TCGA-33-4533-01 19 50373310 50373310 G A AKT1S1 Missense_Mutation p.S232L 0.29 deleterious(0.04) possibly_damaging(0.878) TCGA-33-4533-01 19 50831691 50831691 C A KCNC3 Missense_Mutation p.A217S 0.31 tolerated(0.68) benign(0.241) TCGA-33-4533-01 19 51826948 51826948 C A IGLON5 Missense_Mutation p.A64D 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-33-4533-01 19 51918657 51918657 C G SIGLEC10 Missense_Mutation p.V370L 0.27 deleterious(0) possibly_damaging(0.859) TCGA-33-4533-01 19 53117505 53117505 C T ZNF83 Missense_Mutation p.G105S 0.19 tolerated(1) benign(0.033) TCGA-33-4533-01 19 54818597 54818597 C T LILRA5 3'UTR 0.42 TCGA-33-4533-01 19 54818599 54818599 A G LILRA5 3'UTR 0.41 TCGA-33-4533-01 19 54932556 54932556 C A TTYH1 Missense_Mutation p.D137E 0.25 tolerated(0.06) possibly_damaging(0.908) TCGA-33-4533-01 19 54932557 54932557 C T TTYH1 Missense_Mutation p.H138Y 0.26 tolerated(0.18) benign(0.007) TCGA-33-4533-01 19 56539873 56539873 A G NLRP5 Silent p.L758L 0.37 TCGA-33-4533-01 19 5831374 5831374 C G FUT6 3'UTR 0.35 TCGA-33-4533-01 1 108918854 108918854 C A NBPF6 Intron 0.60 TCGA-33-4533-01 1 110564385 110564385 A T AHCYL1 3'UTR 0.51 TCGA-33-4533-01 1 119467405 119467405 C A TBX15 Missense_Mutation p.G80V 0.51 deleterious(0) probably_damaging(1) TCGA-33-4533-01 1 1226037 1226037 C A SCNN1D Missense_Mutation p.S627Y 0.28 deleterious(0) probably_damaging(0.986) TCGA-33-4533-01 1 149369369 149369369 T C RP5-998N21.4 3'Flank 0.20 TCGA-33-4533-01 1 151497266 151497266 G C CGN Missense_Mutation p.E506D 0.61 tolerated(0.21) benign(0.074) TCGA-33-4533-01 1 152636633 152636633 C A LCE2D Missense_Mutation p.P18T 0.60 deleterious_low_confidence(0.03) unknown(0) TCGA-33-4533-01 1 152636634 152636634 C A LCE2D Missense_Mutation p.P18H 0.60 deleterious_low_confidence(0) unknown(0) TCGA-33-4533-01 1 152882692 152882692 A G IVL Missense_Mutation p.K140R 0.23 deleterious_low_confidence(0.02) unknown(0) TCGA-33-4533-01 1 154932143 154932143 C T PYGO2 Silent p.A111A 0.29 TCGA-33-4533-01 1 155911494 155911494 C T RXFP4 5'UTR 0.54 TCGA-33-4533-01 1 156514248 156514248 T C IQGAP3 Missense_Mutation p.Y774C 0.61 tolerated(0.11) benign(0.049) TCGA-33-4533-01 1 157494125 157494125 T A FCRL5 Missense_Mutation p.E728V 0.21 deleterious(0) probably_damaging(0.991) TCGA-33-4533-01 1 17046571 17046571 G A ESPNP RNA 0.10 TCGA-33-4533-01 1 18703336 18703336 G A IGSF21 Missense_Mutation p.G382R 0.28 deleterious(0.01) probably_damaging(1) TCGA-33-4533-01 1 204006307 204006307 C A LINC00303 Intron 0.55 TCGA-33-4533-01 1 21133912 21133912 T C EIF4G3 Missense_Mutation p.K1559R 0.38 deleterious(0.03) possibly_damaging(0.479) TCGA-33-4533-01 1 214813603 214813603 A G CENPF Missense_Mutation p.Q641R 0.29 possibly_damaging(0.623) TCGA-33-4533-01 1 228873420 228873420 C A RHOU Missense_Mutation p.A88E 0.13 deleterious(0.01) benign(0.398) TCGA-33-4533-01 1 231361067 231361067 T C C1orf131 Intron 0.21 TCGA-33-4533-01 1 232619559 232619559 G A SIPA1L2 Nonsense_Mutation p.R654* 0.61 TCGA-33-4533-01 1 235506071 235506071 A T GGPS1 Missense_Mutation p.K296I 0.61 tolerated(0.1) benign(0.01) TCGA-33-4533-01 1 241798732 241798732 C A CHML Missense_Mutation p.V113F 0.24 deleterious(0.01) benign(0.291) TCGA-33-4533-01 1 244218085 244218085 C T ZBTB18 Missense_Mutation p.R337W 0.27 deleterious(0.01) possibly_damaging(0.534) TCGA-33-4533-01 1 248343633 248343633 G C OR2M2 Missense_Mutation p.A116P 0.57 deleterious(0.02) benign(0.32) TCGA-33-4533-01 1 248551081 248551081 C A OR2T6 Missense_Mutation p.P58T 0.14 deleterious(0) probably_damaging(1) TCGA-33-4533-01 1 248685250 248685250 C G OR2G6 Silent p.L101L 0.53 TCGA-33-4533-01 1 248722772 248722772 C A OR2T29 Missense_Mutation p.M7I 0.15 tolerated(0.1) benign(0.002) TCGA-33-4533-01 1 249210959 249210959 C T PGBD2 Missense_Mutation p.S59L 0.19 deleterious(0.02) probably_damaging(0.94) TCGA-33-4533-01 1 25783156 25783156 T A TMEM57 Silent p.P162P 0.35 TCGA-33-4533-01 1 29587268 29587268 G A PTPRU Missense_Mutation p.E333K 0.41 deleterious(0) possibly_damaging(0.881) TCGA-33-4533-01 1 31214487 31214487 C G LAPTM5 Missense_Mutation p.K86N 0.29 deleterious(0.01) possibly_damaging(0.901) TCGA-33-4533-01 1 36552339 36552339 G A TEKT2 Missense_Mutation p.D175N 0.36 deleterious(0) probably_damaging(1) TCGA-33-4533-01 1 37346264 37346264 G T GRIK3 Nonsense_Mutation p.S174* 0.47 TCGA-33-4533-01 1 38005899 38005899 T C SNIP1 Missense_Mutation p.Y262C 0.44 deleterious(0) probably_damaging(0.991) TCGA-33-4533-01 1 40207597 40207597 T C PPIE Intron 0.44 TCGA-33-4533-01 1 43898205 43898205 C T SZT2 Silent p.P1763P 0.27 TCGA-33-4533-01 1 46763301 46763301 G A LRRC41 Silent p.L97L 0.28 TCGA-33-4533-01 1 50661265 50661265 G A ELAVL4 Missense_Mutation p.D198N 0.37 tolerated(0.06) possibly_damaging(0.571) TCGA-33-4533-01 1 53676551 53676551 A C CPT2 Missense_Mutation p.Q402P 0.41 tolerated(0.29) benign(0.002) TCGA-33-4533-01 1 59248539 59248539 C A JUN Silent p.L68L 0.31 TCGA-33-4533-01 1 62330263 62330263 T G INADL Nonsense_Mutation p.Y931* 0.40 TCGA-33-4533-01 1 65878799 65878799 C T DNAJC6 3'UTR 0.50 TCGA-33-4533-01 1 74507031 74507031 C A LRRIQ3 Missense_Mutation p.L528F 0.33 tolerated(0.14) benign(0.172) TCGA-33-4533-01 1 86939149 86939149 G C CLCA1 Missense_Mutation p.R71P 0.23 deleterious(0) probably_damaging(1) TCGA-33-4533-01 1 9324831 9324831 G T H6PD Missense_Mutation p.R760L 0.49 deleterious(0.01) probably_damaging(0.958) TCGA-33-4533-01 20 13698128 13698128 C T ESF1 Missense_Mutation p.E717K 0.40 deleterious(0.01) probably_damaging(0.986) TCGA-33-4533-01 20 51870229 51870229 G A TSHZ2 Missense_Mutation p.D78N 0.31 deleterious(0) probably_damaging(0.998) TCGA-33-4533-01 20 51870575 51870575 G A TSHZ2 Missense_Mutation p.S193N 0.36 deleterious(0) probably_damaging(0.998) TCGA-33-4533-01 21 10863033 10863033 C A IGHV1OR21-1 Missense_Mutation p.T110K 0.34 deleterious(0) possibly_damaging(0.469) TCGA-33-4533-01 21 11098796 11098796 C A BAGE2 RNA 0.09 TCGA-33-4533-01 21 38858871 38858871 C G DYRK1A Missense_Mutation p.L207V 0.22 deleterious(0) probably_damaging(0.994) TCGA-33-4533-01 21 46935569 46935569 G A SLC19A1 3'UTR 0.27 TCGA-33-4533-01 22 23264871 23264871 G A IGLC7 Missense_Mutation p.G36E 0.33 deleterious_low_confidence(0) benign(0.008) TCGA-33-4533-01 22 23974143 23974143 C A C22orf43 Missense_Mutation p.C23F 0.39 deleterious_low_confidence(0.04) benign(0.282) TCGA-33-4533-01 22 31533955 31533955 G T PLA2G3 Silent p.P269P 0.38 TCGA-33-4533-01 22 31859726 31859726 C A EIF4ENIF1 Missense_Mutation p.D176Y 0.41 deleterious(0.01) probably_damaging(0.934) TCGA-33-4533-01 22 37325795 37325795 C A CSF2RB Missense_Mutation p.L222I 0.37 tolerated(0.12) benign(0.044) TCGA-33-4533-01 22 37603375 37603375 T A SSTR3 Silent p.T156T 0.42 TCGA-33-4533-01 22 43600112 43600112 G A SCUBE1 Missense_Mutation p.P953L 0.34 deleterious(0) probably_damaging(0.999) TCGA-33-4533-01 2 112755045 112755045 A C MERTK Silent p.T532T 0.20 TCGA-33-4533-01 2 115200385 115200385 C T DPP10 Silent p.H10H 0.09 TCGA-33-4533-01 2 136590717 136590717 C A LCT Missense_Mutation p.E228D 0.12 tolerated(0.42) benign(0.003) TCGA-33-4533-01 2 141004694 141004694 G T LRP1B Missense_Mutation p.P4429T 0.21 benign(0.005) TCGA-33-4533-01 2 141115593 141115593 G C LRP1B Missense_Mutation p.L3784V 0.16 possibly_damaging(0.694) TCGA-33-4533-01 2 141259330 141259330 G T LRP1B Missense_Mutation p.H2926N 0.66 benign(0.107) TCGA-33-4533-01 2 155295176 155295176 C T GALNT13 Missense_Mutation p.P490S 0.21 tolerated(0.07) benign(0.078) TCGA-33-4533-01 2 163144789 163144789 C G IFIH1 Missense_Mutation p.Q317H 0.51 deleterious(0.01) possibly_damaging(0.575) TCGA-33-4533-01 2 168106960 168106960 G A XIRP2 Missense_Mutation p.E3020K 0.20 probably_damaging(0.992) TCGA-33-4533-01 2 177017773 177017773 G T HOXD3 Intron 0.53 TCGA-33-4533-01 2 178936293 178936293 C A PDE11A Missense_Mutation p.G291V 0.48 deleterious(0) benign(0.303) TCGA-33-4533-01 2 179395577 179395577 A C TTN Silent p.S35255S 0.23 TCGA-33-4533-01 2 179538385 179538385 T A TTN Missense_Mutation p.K11587N 0.23 TCGA-33-4533-01 2 179602984 179602984 C T TTN Silent p.Q4732Q 0.48 TCGA-33-4533-01 2 179666959 179666959 G C TTN Missense_Mutation p.I67M 0.47 TCGA-33-4533-01 2 182542874 182542874 A G NEUROD1 Silent p.H238H 0.49 TCGA-33-4533-01 2 185803508 185803508 C A ZNF804A Missense_Mutation p.Q1129K 0.20 deleterious(0.01) possibly_damaging(0.857) TCGA-33-4533-01 2 185803623 185803623 C T ZNF804A Missense_Mutation p.P1167L 0.51 deleterious(0) probably_damaging(0.994) TCGA-33-4533-01 2 189868763 189868763 G T COL3A1 Missense_Mutation p.G906V 0.17 unknown(0) TCGA-33-4533-01 2 190430288 190430288 G A SLC40A1 Silent p.T184T 0.17 TCGA-33-4533-01 2 197781209 197781209 C A PGAP1 Missense_Mutation p.G137V 0.16 deleterious(0) probably_damaging(1) TCGA-33-4533-01 2 197781210 197781210 C A PGAP1 Missense_Mutation p.G137C 0.16 deleterious(0) probably_damaging(1) TCGA-33-4533-01 2 203748393 203748393 G A WDR12 Missense_Mutation p.H354Y 0.19 deleterious(0.02) possibly_damaging(0.663) TCGA-33-4533-01 2 204078285 204078285 A G NBEAL1 Missense_Mutation p.H2631R 0.51 tolerated(0.95) benign(0.002) TCGA-33-4533-01 2 209108188 209108188 C A IDH1 Missense_Mutation p.G221W 0.11 deleterious_low_confidence(0) probably_damaging(1) TCGA-33-4533-01 2 225702549 225702549 C A DOCK10 Splice_Site p.X927_splice 0.53 TCGA-33-4533-01 2 225721669 225721669 C T DOCK10 Silent p.V572V 0.31 TCGA-33-4533-01 2 231937100 231937100 G T PSMD1 Silent p.T284T 0.48 TCGA-33-4533-01 2 234178666 234178666 G T ATG16L1 Silent p.L220L 0.10 TCGA-33-4533-01 2 234652404 234652404 G A UGT1A10 Intron 0.20 TCGA-33-4533-01 2 234835254 234835254 G T TRPM8 Silent p.L24L 0.45 TCGA-33-4533-01 2 27670407 27670407 G A IFT172 Missense_Mutation p.S1545F 0.14 deleterious(0.01) possibly_damaging(0.789) TCGA-33-4533-01 2 28002475 28002475 G A MRPL33 3'UTR 0.31 TCGA-33-4533-01 2 33752408 33752408 A T RASGRP3 Missense_Mutation p.S338C 0.15 deleterious(0.01) possibly_damaging(0.595) TCGA-33-4533-01 2 55870350 55870350 T A PNPT1 Splice_Site p.X672_splice 0.51 TCGA-33-4533-01 2 56420530 56420530 G A CCDC85A Missense_Mutation p.E399K 0.53 tolerated(0.08) benign(0.159) TCGA-33-4533-01 2 71190703 71190703 T A ATP6V1B1 Missense_Mutation p.D354E 0.56 deleterious(0) benign(0.194) TCGA-33-4533-01 2 98351161 98351161 G C ZAP70 Silent p.V356V 0.53 TCGA-33-4533-01 3 122287797 122287797 G A DTX3L Silent p.L287L 0.66 TCGA-33-4533-01 3 122399772 122399772 C T PARP14 Silent p.S14S 0.49 TCGA-33-4533-01 3 138739139 138739139 A T PRR23B Missense_Mutation p.L122Q 0.16 deleterious(0) probably_damaging(0.985) TCGA-33-4533-01 3 169540309 169540309 A T LRRIQ4 Silent p.I200I 0.14 TCGA-33-4533-01 3 169644948 169644948 G T SAMD7 Missense_Mutation p.V300F 0.74 tolerated(0.74) benign(0.045) TCGA-33-4533-01 3 179052178 179052178 A T ZNF639 Missense_Mutation p.I476L 0.70 tolerated(0.93) benign(0) TCGA-33-4533-01 3 27243972 27243972 C T NEK10 Missense_Mutation p.A723T 0.37 tolerated(0.08) benign(0.352) TCGA-33-4533-01 3 31871615 31871615 C A OSBPL10 Missense_Mutation p.V216F 0.40 tolerated(0.64) probably_damaging(0.924) TCGA-33-4533-01 3 47467063 47467063 G C SCAP Missense_Mutation p.L317V 0.59 tolerated(0.13) possibly_damaging(0.705) TCGA-33-4533-01 3 48697982 48697982 C G CELSR3 Missense_Mutation p.D696H 0.67 deleterious(0.01) probably_damaging(0.958) TCGA-33-4533-01 3 48698817 48698817 C T CELSR3 Silent p.T417T 0.53 TCGA-33-4533-01 3 51749765 51749765 G A GRM2 Missense_Mutation p.R659H 0.59 deleterious(0) probably_damaging(1) TCGA-33-4533-01 3 71102787 71102787 C A FOXP1 Missense_Mutation p.Q142H 0.60 deleterious(0.04) benign(0.216) TCGA-33-4533-01 3 85961556 85961556 G T CADM2 Missense_Mutation p.R181L 0.35 deleterious(0) benign(0.443) TCGA-33-4533-01 3 97851707 97851707 C T OR5H1 Missense_Mutation p.H56Y 0.44 deleterious(0) probably_damaging(0.982) TCGA-33-4533-01 3 97983724 97983724 C A OR5H6 Missense_Mutation p.P199Q 0.13 tolerated(0.21) probably_damaging(0.927) TCGA-33-4533-01 3 98531173 98531173 T C DCBLD2 Intron 0.60 TCGA-33-4533-01 4 177138064 177138064 C A ASB5 Missense_Mutation p.G256V 0.64 deleterious(0) probably_damaging(1) TCGA-33-4533-01 4 185606641 185606641 G T PRIMPOL Missense_Mutation p.G392V 0.57 possibly_damaging(0.646) TCGA-33-4533-01 4 69796922 69796922 T C UGT2A3 Silent p.L345L 0.74 TCGA-33-4533-01 4 69798458 69798458 T C UGT2A3 Missense_Mutation p.Q295R 0.64 deleterious(0.01) benign(0.392) TCGA-33-4533-01 4 90169135 90169135 G T GPRIN3 Silent p.I709I 0.73 TCGA-33-4533-01 5 118485124 118485124 G T DMXL1 Missense_Mutation p.R1201L 0.69 deleterious(0) probably_damaging(0.998) TCGA-33-4533-01 5 127674728 127674728 A T FBN2 Silent p.P1123P 0.73 TCGA-33-4533-01 5 128326129 128326129 T G SLC27A6 Missense_Mutation p.L314R 0.78 deleterious(0) probably_damaging(0.995) TCGA-33-4533-01 5 140175437 140175437 T A PCDHA2 Missense_Mutation p.D296E 0.77 tolerated_low_confidence(0.09) benign(0.023) TCGA-33-4533-01 5 167957133 167957133 C T FBLL1 Silent p.A208A 0.07 TCGA-33-4533-01 5 176005554 176005554 G C CDHR2 Missense_Mutation p.G588A 0.66 deleterious(0) possibly_damaging(0.685) TCGA-33-4533-01 5 180377501 180377501 C A BTNL8 Missense_Mutation p.S487Y 0.77 tolerated(0.35) benign(0.228) TCGA-33-4533-01 5 33461126 33461126 G A TARS Missense_Mutation p.R490K 0.65 deleterious(0.04) probably_damaging(0.951) TCGA-33-4533-01 5 45461983 45461983 G A HCN1 Missense_Mutation p.P326S 0.58 deleterious(0.01) benign(0.077) TCGA-33-4533-01 5 72192363 72192363 G A TNPO1 Missense_Mutation p.G741E 0.72 deleterious(0) probably_damaging(1) TCGA-33-4533-01 5 80503102 80503102 C T RASGRF2 Missense_Mutation p.S1002L 0.69 deleterious(0.01) probably_damaging(0.955) TCGA-33-4533-01 5 85578647 85578647 C A NBPF22P RNA 0.65 TCGA-33-4533-01 5 90074835 90074835 G T GPR98 Missense_Mutation p.V4335F 0.67 benign(0.397) TCGA-33-4533-01 5 90101179 90101179 A T GPR98 Missense_Mutation p.T4914S 0.70 possibly_damaging(0.636) TCGA-33-4533-01 6 109484221 109484221 G C CEP57L1 3'UTR 0.22 TCGA-33-4533-01 6 118887133 118887133 T C CEP85L Silent p.T196T 0.42 TCGA-33-4533-01 6 127608771 127608771 G A RNF146 Missense_Mutation p.G338D 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.476) TCGA-33-4533-01 6 132910270 132910270 T A TAAR5 Missense_Mutation p.M186L 0.41 tolerated(1) benign(0.003) TCGA-33-4533-01 6 139247564 139247564 C A REPS1 Missense_Mutation p.D438Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-33-4533-01 6 145124203 145124203 G A UTRN Missense_Mutation p.V3093I 0.37 tolerated(0.5) benign(0.206) TCGA-33-4533-01 6 150141797 150141797 A G LRP11 Missense_Mutation p.L464P 0.59 deleterious(0) probably_damaging(0.972) TCGA-33-4533-01 6 151914353 151914353 G T CCDC170 Missense_Mutation p.V469F 0.36 deleterious(0) possibly_damaging(0.879) TCGA-33-4533-01 6 163510373 163510373 G T PACRG Silent p.V182V 0.43 TCGA-33-4533-01 6 167728850 167728850 G T UNC93A Silent p.V428V 0.26 TCGA-33-4533-01 6 167753874 167753874 C A TTLL2 Missense_Mutation p.H162Q 0.41 tolerated(0.12) benign(0.091) TCGA-33-4533-01 6 25862035 25862035 C T SLC17A3 Missense_Mutation p.G176S 0.37 deleterious(0.02) probably_damaging(0.922) TCGA-33-4533-01 6 29054278 29054278 G T OR2B3 Missense_Mutation p.L250I 0.31 tolerated(0.28) possibly_damaging(0.841) TCGA-33-4533-01 6 30881678 30881678 C A GTF2H4 Nonsense_Mutation p.S436* 0.28 TCGA-33-4533-01 6 34951166 34951166 A G ANKS1A Missense_Mutation p.I326V 0.41 tolerated(0.48) benign(0) TCGA-33-4533-01 6 38704871 38704871 C A DNAH8 Nonsense_Mutation p.S47* 0.34 TCGA-33-4533-01 6 48036181 48036181 C T PTCHD4 Missense_Mutation p.E71K 0.43 deleterious(0) probably_damaging(0.952) TCGA-33-4533-01 6 55142175 55142175 C T HCRTR2 Intron 0.33 TCGA-33-4533-01 6 57512867 57512867 A C PRIM2 3'UTR 0.25 TCGA-33-4533-01 6 69666693 69666693 G A BAI3 Missense_Mutation p.R506Q 0.46 deleterious(0.03) probably_damaging(0.994) TCGA-33-4533-01 6 7602899 7602899 A G SNRNP48 Silent p.A213A 0.21 TCGA-33-4533-01 6 97512545 97512545 G - KLHL32 Frame_Shift_Del p.G119Afs*21 0.31 TCGA-33-4533-01 7 100350489 100350489 A G ZAN Missense_Mutation p.T921A 0.27 unknown(0) TCGA-33-4533-01 7 100676630 100676630 G - MUC17 Frame_Shift_Del p.E645Rfs*16 0.23 TCGA-33-4533-01 7 102614210 102614210 C A FBXL13 Intron 0.60 TCGA-33-4533-01 7 11486857 11486857 C A THSD7A Nonsense_Mutation p.G934* 0.51 TCGA-33-4533-01 7 11509548 11509548 G A THSD7A Missense_Mutation p.P776S 0.38 deleterious(0.03) benign(0.035) TCGA-33-4533-01 7 126173378 126173378 C G GRM8 Silent p.A686A 0.54 TCGA-33-4533-01 7 142013440 142013440 G T TRBV4-1 Missense_Mutation p.A99S 0.56 tolerated(0.6) benign(0.253) TCGA-33-4533-01 7 143701539 143701539 C A OR6B1 Silent p.A150A 0.68 TCGA-33-4533-01 7 150489160 150489160 T C TMEM176B Missense_Mutation p.Q235R 0.51 tolerated(0.44) benign(0.012) TCGA-33-4533-01 7 154379476 154379476 C T DPP6 Intron 0.22 TCGA-33-4533-01 7 157041102 157041102 G T UBE3C Missense_Mutation p.G841V 0.28 tolerated(0.09) benign(0.039) TCGA-33-4533-01 7 18705957 18705957 C T HDAC9 Missense_Mutation p.T530I 0.56 tolerated(0.19) benign(0.001) TCGA-33-4533-01 7 2692645 2692645 G T TTYH3 Splice_Site p.X340_splice 0.35 TCGA-33-4533-01 7 31132311 31132311 G T ADCYAP1R1 Missense_Mutation p.Q336H 0.54 tolerated(0.25) probably_damaging(0.992) TCGA-33-4533-01 7 5036429 5036429 A T RNF216P1 RNA 0.24 TCGA-33-4533-01 7 92760803 92760803 C A SAMD9L Missense_Mutation p.E1494D 0.05 tolerated(1) benign(0.014) TCGA-33-4533-01 7 94937448 94937448 T A PON1 Missense_Mutation p.L191F 0.57 tolerated(0.07) benign(0.075) TCGA-33-4533-01 7 98955993 98955993 G T ARPC1A Silent p.P248P 0.48 TCGA-33-4533-01 7 99795708 99795708 A G STAG3 Splice_Site p.X389_splice 0.20 TCGA-33-4533-01 8 103226340 103226340 T C RRM2B Missense_Mutation p.N244S 0.82 tolerated_low_confidence(0.1) benign(0.01) TCGA-33-4533-01 8 110476887 110476887 G A PKHD1L1 Missense_Mutation p.G2609D 0.77 deleterious(0) probably_damaging(0.996) TCGA-33-4533-01 8 110477141 110477141 G A PKHD1L1 Missense_Mutation p.G2694R 0.71 deleterious(0.02) probably_damaging(0.926) TCGA-33-4533-01 8 113308161 113308161 C A CSMD3 Missense_Mutation p.V2839F 0.81 deleterious(0) probably_damaging(0.995) TCGA-33-4533-01 8 119938863 119938863 G T TNFRSF11B Silent p.G229G 0.77 TCGA-33-4533-01 8 143866620 143866620 C A LY6D 3'UTR 0.76 TCGA-33-4533-01 8 26365632 26365634 CAG AA PNMA2 Frame_Shift_Del p.P213Lfs*8 0.31 TCGA-33-4533-01 8 43147734 43147734 G T POTEA RNA 0.70 TCGA-33-4533-01 8 52323825 52323825 C A PXDNL Missense_Mutation p.D683Y 0.76 deleterious(0) probably_damaging(0.947) TCGA-33-4533-01 8 70980718 70980718 T C PRDM14 Silent p.P250P 0.79 TCGA-33-4533-01 8 82572769 82572769 C T IMPA1 Missense_Mutation p.V293M 0.73 deleterious(0.01) probably_damaging(0.946) TCGA-33-4533-01 8 90996768 90996768 C T NBN Missense_Mutation p.A8T 0.26 tolerated(0.27) benign(0.014) TCGA-33-4533-01 9 101552494 101552494 C T ANKS6 Missense_Mutation p.D252N 0.32 tolerated(0.63) benign(0.04) TCGA-33-4533-01 9 117186785 117186785 C G DFNB31 Silent p.L415L 0.41 TCGA-33-4533-01 9 135772642 135772642 C A TSC1 Missense_Mutation p.R968S 0.39 deleterious(0.01) benign(0.184) TCGA-33-4533-01 9 139137450 139137450 T G QSOX2 Missense_Mutation p.D67A 0.22 tolerated(0.17) benign(0.031) TCGA-33-4533-01 9 19550241 19550241 G A SLC24A2 Missense_Mutation p.P458L 0.34 deleterious(0) probably_damaging(0.922) TCGA-33-4533-01 9 26997838 26997838 A T LRRC19 Missense_Mutation p.D161E 0.35 tolerated(0.37) benign(0.008) TCGA-33-4533-01 9 27183474 27183474 C A TEK Missense_Mutation p.P350T 0.23 deleterious(0) probably_damaging(0.961) TCGA-33-4533-01 9 27183475 27183475 C A TEK Missense_Mutation p.P350Q 0.23 deleterious(0) probably_damaging(0.967) TCGA-33-4533-01 9 34506780 34506780 A C DNAI1 Missense_Mutation p.N407H 0.30 tolerated(0.09) benign(0.087) TCGA-33-4533-01 9 35313984 35313984 G A UNC13B Missense_Mutation p.E389K 0.38 deleterious_low_confidence(0.02) benign(0.407) TCGA-33-4533-01 9 35385807 35385807 G A UNC13B Missense_Mutation p.M905I 0.29 deleterious(0) probably_damaging(0.968) TCGA-33-4533-01 9 35397239 35397239 G C UNC13B Missense_Mutation p.E1121Q 0.38 deleterious(0) probably_damaging(0.998) TCGA-33-4533-01 9 73442860 73442860 G T TRPM3 Missense_Mutation p.F292L 0.31 deleterious(0) benign(0.161) TCGA-33-4533-01 9 84563776 84563776 C - RP11-383M4.6 Intron 0.19 TCGA-33-4533-01 9 8465650 8465650 C A PTPRD Missense_Mutation p.R1177L 0.28 deleterious(0.05) possibly_damaging(0.809) TCGA-33-4533-01 9 86900906 86900906 G C SLC28A3 Silent p.A467A 0.38 TCGA-33-4533-01 9 95078179 95078179 A G NOL8 Missense_Mutation p.I243T 0.35 tolerated(1) benign(0.002) TCGA-33-4533-01 9 97522859 97522859 G T C9orf3 Missense_Mutation p.G265V 0.29 deleterious(0) possibly_damaging(0.87) TCGA-33-4533-01 9 98735335 98735335 A T ERCC6L2 3'Flank 0.40 TCGA-33-4533-01 X 100505427 100505427 T C DRP2 Missense_Mutation p.V519A 0.69 deleterious(0) probably_damaging(0.999) TCGA-33-4533-01 X 101857704 101857704 A T ARMCX5 Missense_Mutation p.K212I 0.04 deleterious(0.03) benign(0.007) TCGA-33-4533-01 X 102974010 102974010 G T GLRA4 Missense_Mutation p.S303Y 0.06 deleterious(0.01) probably_damaging(0.953) TCGA-33-4533-01 X 103043405 103043405 G T PLP1 Missense_Mutation p.G221V 0.64 deleterious(0) probably_damaging(1) TCGA-33-4533-01 X 106185171 106185171 T A MORC4 Missense_Mutation p.E886V 0.07 deleterious(0.02) benign(0.021) TCGA-33-4533-01 X 113961348 113961348 G T HTR2C Translation_Start_Site p.M1? 0.67 deleterious_low_confidence(0) benign(0.38) TCGA-33-4533-01 X 117773511 117773511 G T DOCK11 Missense_Mutation p.S1372I 0.69 tolerated(0.14) benign(0.291) TCGA-33-4533-01 X 14026983 14026983 C A GEMIN8 3'UTR 0.78 TCGA-33-4533-01 X 151870167 151870167 T A MAGEA6 Missense_Mutation p.V286D 0.68 deleterious(0) probably_damaging(1) TCGA-33-4533-01 X 29973391 29973391 G T IL1RAPL1 Silent p.L515L 0.04 TCGA-33-4533-01 X 30739016 30739016 G A GK Missense_Mutation p.A463T 0.05 deleterious(0) probably_damaging(1) TCGA-33-4533-01 X 38020265 38020265 T A SRPX Missense_Mutation p.E232D 0.04 deleterious(0.01) probably_damaging(0.997) TCGA-33-4533-01 X 52681327 52681327 A G SSX7 Silent p.D85D 0.64 TCGA-33-4533-01 X 52841664 52841664 T C XAGE5 Splice_Site p.X24_splice 0.05 TCGA-33-4533-01 X 53439033 53439033 G A SMC1A Missense_Mutation p.S342L 0.18 deleterious(0.01) benign(0.04) TCGA-33-4533-01 X 55513249 55513249 T C USP51 Silent p.L708L 0.69 TCGA-33-4533-01 X 70389333 70389333 A G NLGN3 Missense_Mutation p.T645A 0.54 tolerated(0.06) probably_damaging(0.995) TCGA-33-4533-01 X 72433380 72433380 G C NAP1L2 Missense_Mutation p.P317A 0.04 deleterious(0.01) probably_damaging(0.968) TCGA-33-4533-01 X 73042994 73042994 A T XIST RNA 0.85 TCGA-33-4533-01 X 73043403 73043403 T C XIST RNA 0.69 TCGA-33-4533-01 X 76854945 76854945 C G ATRX Missense_Mutation p.G1964A 0.05 possibly_damaging(0.607) TCGA-33-4533-01 X 78427277 78427277 C A GPR174 Missense_Mutation p.S258Y 0.05 deleterious(0.02) probably_damaging(0.917) TCGA-33-4533-01 X 78427278 78427278 C A GPR174 Silent p.S258S 0.06 TCGA-33-4533-01 X 8501094 8501094 C A KAL1 Missense_Mutation p.R662I 0.25 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-33-4533-01 X 91066265 91066265 G C PCDH11X 5'UTR 0.62 TCGA-33-4538-01 10 118969311 118969311 C T KCNK18 Missense_Mutation p.S219L 0.06 tolerated(0.29) benign(0.039) TCGA-33-4538-01 10 15120603 15120603 C T ACBD7 Splice_Site p.X65_splice 0.47 TCGA-33-4538-01 10 35896661 35896661 C T GJD4 Missense_Mutation p.H74Y 0.16 deleterious(0) possibly_damaging(0.864) TCGA-33-4538-01 10 49448520 49448520 C A FRMPD2 Missense_Mutation p.V195L 0.16 tolerated(0.28) benign(0.141) TCGA-33-4538-01 10 50902574 50902574 G A C10orf53 Intron 0.41 TCGA-33-4538-01 10 64136627 64136627 C A ZNF365 Silent p.A225A 0.40 TCGA-33-4538-01 10 68687044 68687044 T A LRRTM3 Missense_Mutation p.F124I 0.45 deleterious(0.02) benign(0.001) TCGA-33-4538-01 10 7759670 7759670 C T ITIH2 Silent p.Y183Y 0.17 TCGA-33-4538-01 10 96802818 96802818 C A CYP2C8 Missense_Mutation p.E326D 0.66 deleterious(0) probably_damaging(0.998) TCGA-33-4538-01 11 103907373 103907373 G A DDI1 5'UTR 0.38 TCGA-33-4538-01 11 105845102 105845102 G T GRIA4 Missense_Mutation p.L825F 0.17 deleterious(0) probably_damaging(0.998) TCGA-33-4538-01 11 108382901 108382901 T C EXPH5 Silent p.R1111R 0.18 TCGA-33-4538-01 11 124180028 124180028 A G OR8D1 Missense_Mutation p.L212P 0.61 deleterious(0.01) probably_damaging(0.95) TCGA-33-4538-01 11 125867207 125867207 C T CDON Missense_Mutation p.A753T 0.24 deleterious(0) probably_damaging(0.984) TCGA-33-4538-01 11 55419124 55419124 T A OR4S2 Missense_Mutation p.F249I 0.14 deleterious(0) probably_damaging(0.999) TCGA-33-4538-01 11 55419125 55419125 T A OR4S2 Missense_Mutation p.F249Y 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-33-4538-01 11 56258190 56258190 G T OR5M8 Nonsense_Mutation p.Y219* 0.31 TCGA-33-4538-01 11 58190445 58190445 A G OR5B2 Missense_Mutation p.V97A 0.28 tolerated_low_confidence(1) benign(0) TCGA-33-4538-01 11 59190177 59190177 A G OR5A2 Missense_Mutation p.S84P 0.38 deleterious(0.05) benign(0.418) TCGA-33-4538-01 11 64032799 64032799 C T PLCB3 Silent p.L954L 0.20 TCGA-33-4538-01 11 64427952 64427952 G A NRXN2 Silent p.N747N 0.23 TCGA-33-4538-01 11 67203563 67203563 C T PTPRCAP Missense_Mutation p.G88S 0.33 deleterious(0.03) probably_damaging(0.97) TCGA-33-4538-01 11 68030121 68030121 C T C11orf24 Silent p.T114T 0.22 TCGA-33-4538-01 11 74555221 74555221 C G XRRA1 Missense_Mutation p.E671Q 0.17 deleterious(0.05) benign(0.191) TCGA-33-4538-01 12 10601878 10601878 C G KLRC1 Silent p.S149S 0.11 TCGA-33-4538-01 12 109717646 109717646 C A FOXN4 Missense_Mutation p.A462S 0.55 tolerated(0.33) benign(0.017) TCGA-33-4538-01 12 113866227 113866227 G A SDSL Missense_Mutation p.M59I 0.32 tolerated(0.4) benign(0.043) TCGA-33-4538-01 12 122724483 122724483 T A VPS33A Missense_Mutation p.D369V 0.35 tolerated(0.11) benign(0.013) TCGA-33-4538-01 12 12311984 12311984 C T LRP6 Missense_Mutation p.R857H 0.40 deleterious(0) probably_damaging(1) TCGA-33-4538-01 12 21960410 21960410 G C ABCC9 Missense_Mutation p.A1440G 0.26 deleterious(0.03) benign(0.12) TCGA-33-4538-01 12 24736276 24736276 C T LINC00477 RNA 0.52 TCGA-33-4538-01 12 45105132 45105132 C A NELL2 Missense_Mutation p.D428Y 0.33 deleterious(0.01) possibly_damaging(0.646) TCGA-33-4538-01 12 45567236 45567236 C T PLEKHA8P1 RNA 0.14 TCGA-33-4538-01 12 49443464 49443464 C A KMT2D Splice_Site p.X1302_splice 0.37 TCGA-33-4538-01 12 56975191 56975191 G T RBMS2 Missense_Mutation p.D211Y 0.35 deleterious(0) possibly_damaging(0.834) TCGA-33-4538-01 12 71029760 71029760 G A PTPRB Nonsense_Mutation p.Q48* 0.28 TCGA-33-4538-01 12 90028892 90028892 A T ATP2B1 Missense_Mutation p.F181L 0.35 deleterious(0) probably_damaging(0.986) TCGA-33-4538-01 12 97052002 97052002 G A C12orf55 Missense_Mutation p.E1780K 0.11 deleterious(0) probably_damaging(0.917) TCGA-33-4538-01 13 108862405 108862405 C T LIG4 Silent p.Q404Q 0.12 TCGA-33-4538-01 13 111125434 111125434 G T COL4A2 Missense_Mutation p.G788C 0.50 probably_damaging(0.989) TCGA-33-4538-01 13 52440012 52440012 G A CCDC70 Silent p.E166E 0.60 TCGA-33-4538-01 13 77900796 77900796 T A MYCBP2 Translation_Start_Site p.M1? 0.86 unknown(0) TCGA-33-4538-01 13 99908124 99908124 C G GPR18 Translation_Start_Site p.M1? 0.20 tolerated_low_confidence(0.45) benign(0.13) TCGA-33-4538-01 14 105167956 105167956 C T INF2 Missense_Mutation p.S85L 0.37 deleterious(0) probably_damaging(1) TCGA-33-4538-01 14 20443879 20443879 C G OR4K15 Missense_Mutation p.L68V 0.26 deleterious(0.01) possibly_damaging(0.468) TCGA-33-4538-01 14 24633866 24633866 G A IRF9 Silent p.V231V 0.22 TCGA-33-4538-01 14 24662104 24662104 G C TM9SF1 Missense_Mutation p.I239M 0.25 deleterious(0) probably_damaging(0.993) TCGA-33-4538-01 14 65203596 65203596 A T PLEKHG3 Missense_Mutation p.Q401H 0.19 tolerated(0.05) possibly_damaging(0.655) TCGA-33-4538-01 14 68042598 68042598 G T PLEKHH1 Missense_Mutation p.C743F 0.28 deleterious(0) possibly_damaging(0.492) TCGA-33-4538-01 14 73739301 73739301 G A PAPLN Missense_Mutation p.E1229K 0.46 deleterious(0.01) probably_damaging(0.986) TCGA-33-4538-01 14 86088141 86088141 C T FLRT2 Silent p.L95L 0.20 TCGA-33-4538-01 14 96772007 96772007 T G ATG2B Missense_Mutation p.K1551T 0.25 deleterious(0) probably_damaging(0.991) TCGA-33-4538-01 15 101717972 101717972 T C CHSY1 Missense_Mutation p.N677S 0.31 tolerated(0.3) benign(0.145) TCGA-33-4538-01 15 25427388 25427388 G C SNORD115-6 3'Flank 0.33 TCGA-33-4538-01 15 25959015 25959015 C T ATP10A Missense_Mutation p.R717Q 0.30 deleterious(0) probably_damaging(0.978) TCGA-33-4538-01 15 30024643 30024643 T G TJP1 Missense_Mutation p.I671L 0.11 tolerated(0.51) benign(0.001) TCGA-33-4538-01 15 35703062 35703062 C T DPH6 Missense_Mutation p.D181N 0.25 tolerated(0.21) benign(0.003) TCGA-33-4538-01 15 35703063 35703063 C A DPH6 Silent p.L180L 0.26 TCGA-33-4538-01 15 41029865 41029865 G A RMDN3 Silent p.L395L 0.31 TCGA-33-4538-01 15 42693986 42693986 C G CAPN3 Missense_Mutation p.T501S 0.40 tolerated(0.12) benign(0.258) TCGA-33-4538-01 15 49081179 49081179 G C CEP152 Missense_Mutation p.T331R 0.28 deleterious(0.01) probably_damaging(0.986) TCGA-33-4538-01 15 65790284 65790284 C A DPP8 Missense_Mutation p.W227C 0.46 deleterious(0) probably_damaging(0.999) TCGA-33-4538-01 15 66621404 66621404 G T DIS3L Missense_Mutation p.M766I 0.33 deleterious(0) probably_damaging(0.994) TCGA-33-4538-01 15 75188595 75188595 A G MPI Missense_Mutation p.N258S 0.28 deleterious(0) probably_damaging(0.989) TCGA-33-4538-01 15 78894275 78894275 T C CHRNA3 Missense_Mutation p.I237V 0.29 deleterious(0.01) benign(0.173) TCGA-33-4538-01 16 27374479 27374479 T A IL4R Silent p.G602G 0.22 TCGA-33-4538-01 16 55608595 55608595 T C LPCAT2 Missense_Mutation p.L423S 0.23 deleterious(0) probably_damaging(0.999) TCGA-33-4538-01 16 57760055 57760055 G A CCDC135 Missense_Mutation p.A612T 0.22 tolerated(0.8) benign(0.001) TCGA-33-4538-01 16 70302213 70302213 G C AARS Silent p.G344G 0.23 TCGA-33-4538-01 16 75512961 75512961 C T CHST6 Missense_Mutation p.A256T 0.47 deleterious(0.02) probably_damaging(0.966) TCGA-33-4538-01 16 779219 779219 G A HAGHL Intron 0.21 TCGA-33-4538-01 17 17722421 17722421 C A SREBF1 Missense_Mutation p.R355L 0.14 deleterious(0) probably_damaging(0.999) TCGA-33-4538-01 17 37565861 37565861 G A MED1 Silent p.N871N 0.23 TCGA-33-4538-01 17 38151228 38151228 G A PSMD3 Missense_Mutation p.V335M 0.22 deleterious(0) probably_damaging(0.973) TCGA-33-4538-01 17 42761315 42761315 G A CCDC43 Missense_Mutation p.L73F 0.31 deleterious(0) probably_damaging(0.977) TCGA-33-4538-01 17 47075099 47075099 A G IGF2BP1 5'UTR 0.33 TCGA-33-4538-01 17 49197943 49197943 G A SPAG9 Silent p.S25S 0.35 TCGA-33-4538-01 17 61619602 61619602 G A KCNH6 Missense_Mutation p.G652E 0.28 deleterious(0.05) possibly_damaging(0.724) TCGA-33-4538-01 17 66914254 66914254 C A ABCA8 Nonsense_Mutation p.E621* 0.20 TCGA-33-4538-01 17 7578208 7578208 T C TP53 Missense_Mutation p.H214R 0.73 deleterious(0.02) probably_damaging(0.922) TCGA-33-4538-01 17 7751014 7751014 C G KDM6B Missense_Mutation p.P470A 0.43 unknown(0) TCGA-33-4538-01 17 79801949 79801949 T G P4HB Missense_Mutation p.E489A 0.22 tolerated(0.09) possibly_damaging(0.902) TCGA-33-4538-01 17 79801950 79801950 C A P4HB Nonsense_Mutation p.E489* 0.22 TCGA-33-4538-01 17 79803533 79803533 G C P4HB Silent p.V421V 0.20 TCGA-33-4538-01 18 10487807 10487807 C T APCDD1 Silent p.N439N 0.10 TCGA-33-4538-01 18 24496806 24496806 T A CHST9 Missense_Mutation p.H250L 0.49 deleterious(0) probably_damaging(1) TCGA-33-4538-01 19 10602649 10602649 A G KEAP1 Missense_Mutation p.L310P 0.36 deleterious(0.01) probably_damaging(0.943) TCGA-33-4538-01 19 12780514 12780516 AAT - WDR83OS 5'UTR 0.27 TCGA-33-4538-01 19 14627679 14627679 A C DNAJB1 Missense_Mutation p.F131V 0.42 tolerated(0.05) probably_damaging(0.912) TCGA-33-4538-01 19 18119344 18119344 C T ARRDC2 Silent p.Y75Y 0.32 TCGA-33-4538-01 19 23556594 23556594 C T ZNF91 Missense_Mutation p.G68E 0.21 tolerated(0.25) benign(0.003) TCGA-33-4538-01 19 41040049 41040049 C T SPTBN4 Silent p.G1386G 0.40 TCGA-33-4538-01 19 41512931 41512931 C G CYP2B6 Missense_Mutation p.F202L 0.30 tolerated(0.81) benign(0.044) TCGA-33-4538-01 19 4219654 4219654 G A ANKRD24 Missense_Mutation p.E1024K 0.33 deleterious(0.03) possibly_damaging(0.637) TCGA-33-4538-01 19 47207510 47207510 T C PRKD2 Missense_Mutation p.I269V 0.29 tolerated(1) benign(0.003) TCGA-33-4538-01 19 49378889 49378889 G A PPP1R15A Missense_Mutation p.V562I 0.50 deleterious(0.04) probably_damaging(0.935) TCGA-33-4538-01 19 51165736 51165736 C T SHANK1 Missense_Mutation p.R1991Q 0.62 unknown(0) TCGA-33-4538-01 19 52633754 52633754 C T ZNF616 Silent p.Q4Q 0.60 TCGA-33-4538-01 19 55512397 55512397 G A NLRP2 3'UTR 0.59 TCGA-33-4538-01 19 7163054 7163054 T C INSR Missense_Mutation p.Y673C 0.16 deleterious(0) probably_damaging(0.998) TCGA-33-4538-01 19 960131 960131 C G ARID3A Missense_Mutation p.L245V 0.38 deleterious(0) possibly_damaging(0.903) TCGA-33-4538-01 1 103453203 103453203 G A COL11A1 Nonsense_Mutation p.Q830* 0.27 TCGA-33-4538-01 1 111147297 111147297 C G KCNA2 Silent p.V36V 0.18 TCGA-33-4538-01 1 120468395 120468395 T A NOTCH2 Missense_Mutation p.Q1348H 0.50 tolerated(0.09) benign(0.001) TCGA-33-4538-01 1 156647063 156647063 C G NES 5'UTR 0.19 TCGA-33-4538-01 1 158623135 158623135 G A SPTA1 Silent p.F1039F 0.23 TCGA-33-4538-01 1 159035952 159035952 G A AIM2 Silent p.F188F 0.20 TCGA-33-4538-01 1 160062180 160062180 C T IGSF8 Missense_Mutation p.G540S 0.29 deleterious(0) probably_damaging(0.999) TCGA-33-4538-01 1 174190149 174190149 G T RABGAP1L Nonsense_Mutation p.E60* 0.16 TCGA-33-4538-01 1 175046710 175046710 G T TNN Missense_Mutation p.K52N 0.19 deleterious(0.03) possibly_damaging(0.677) TCGA-33-4538-01 1 190067750 190067750 G A BRINP3 Missense_Mutation p.P567S 0.40 deleterious(0) probably_damaging(0.996) TCGA-33-4538-01 1 196311207 196311207 A C KCNT2 Splice_Site p.X518_splice 0.24 TCGA-33-4538-01 1 196342287 196342287 A G KCNT2 Silent p.V462V 0.15 TCGA-33-4538-01 1 196884133 196884133 A G CFHR4 Missense_Mutation p.T468A 0.23 deleterious(0.04) benign(0.217) TCGA-33-4538-01 1 207646438 207646438 A T CR2 Missense_Mutation p.Y631F 0.46 tolerated(0.62) benign(0.002) TCGA-33-4538-01 1 207646439 207646439 T A CR2 Nonsense_Mutation p.Y631* 0.48 TCGA-33-4538-01 1 21051069 21051069 G A SH2D5 Silent p.H150H 0.50 TCGA-33-4538-01 1 218458671 218458671 G T RRP15 Missense_Mutation p.A5S 0.17 deleterious_low_confidence(0.01) benign(0.082) TCGA-33-4538-01 1 222717002 222717002 C T HHIPL2 Missense_Mutation p.R284H 0.32 tolerated(0.3) benign(0.025) TCGA-33-4538-01 1 247607404 247607404 G T NLRP3 Nonsense_Mutation p.E934* 0.26 TCGA-33-4538-01 1 248085113 248085113 C A OR2T8 Missense_Mutation p.S265Y 0.29 deleterious(0) probably_damaging(0.988) TCGA-33-4538-01 1 248737429 248737429 G T OR2T34 Silent p.L210L 0.19 TCGA-33-4538-01 1 42880318 42880318 T A RIMKLA Missense_Mutation p.F283L 0.07 tolerated(0.34) benign(0.401) TCGA-33-4538-01 1 47395763 47395763 A T CYP4A11 3'UTR 0.18 TCGA-33-4538-01 1 51946954 51946954 G C EPS15 Nonsense_Mutation p.Y22* 0.65 TCGA-33-4538-01 1 67145430 67145430 G A SGIP1 Missense_Mutation p.G270E 0.51 tolerated_low_confidence(0.16) benign(0.145) TCGA-33-4538-01 1 7723762 7723762 G A CAMTA1 Silent p.A385A 0.26 TCGA-33-4538-01 1 90400336 90400336 A G LRRC8D Missense_Mutation p.N570S 0.72 tolerated(0.56) probably_damaging(0.942) TCGA-33-4538-01 20 259859 259859 G A C20orf96 Missense_Mutation p.T140M 0.35 tolerated(0.08) possibly_damaging(0.503) TCGA-33-4538-01 20 39990911 39990911 T C EMILIN3 Missense_Mutation p.D433G 0.31 tolerated(0.07) benign(0.008) TCGA-33-4538-01 20 5157335 5157335 T A CDS2 Silent p.T111T 0.05 TCGA-33-4538-01 20 57428683 57428683 T G GNAS Silent p.P121P 0.38 TCGA-33-4538-01 21 14982968 14982968 T A POTED Missense_Mutation p.L140Q 0.70 deleterious(0) possibly_damaging(0.905) TCGA-33-4538-01 21 15481272 15481272 C T LIPI 3'UTR 0.32 TCGA-33-4538-01 21 31864238 31864238 T C KRTAP19-3 Missense_Mutation p.Y13C 0.61 deleterious_low_confidence(0) unknown(0) TCGA-33-4538-01 21 43706024 43706024 G T ABCG1 Missense_Mutation p.R298L 0.45 tolerated(0.05) benign(0.004) TCGA-33-4538-01 21 47541030 47541030 G C COL6A2 Missense_Mutation p.G484A 0.29 deleterious(0.01) probably_damaging(0.994) TCGA-33-4538-01 22 23165714 23165714 C A IGLV2-8 Silent p.T95T 0.23 TCGA-33-4538-01 22 32506172 32506172 C A SLC5A1 Missense_Mutation p.A656D 0.13 tolerated(0.07) possibly_damaging(0.756) TCGA-33-4538-01 22 50555692 50555692 G T MOV10L1 Missense_Mutation p.A456S 0.42 tolerated(0.12) benign(0.017) TCGA-33-4538-01 2 179644760 179644760 A G TTN Silent p.D1232D 0.53 TCGA-33-4538-01 2 198948702 198948702 A G PLCL1 Missense_Mutation p.E154G 0.51 tolerated(0.15) possibly_damaging(0.616) TCGA-33-4538-01 2 198948753 198948753 A T PLCL1 Missense_Mutation p.N171I 0.21 deleterious(0) possibly_damaging(0.714) TCGA-33-4538-01 2 21233009 21233009 C A APOB Missense_Mutation p.S2244I 0.33 probably_damaging(0.994) TCGA-33-4538-01 2 220406350 220406366 AGTGCAGCCCACCCCGG GC CHPF In_Frame_Del p.T287_T292delinsS 0.44 TCGA-33-4538-01 2 220462644 220462644 C T STK11IP Silent p.F2F 0.19 TCGA-33-4538-01 2 242662424 242662424 G A ING5 Missense_Mutation p.E185K 0.29 deleterious(0) possibly_damaging(0.54) TCGA-33-4538-01 2 27327225 27327225 A G CGREF1 Silent p.L4L 0.38 TCGA-33-4538-01 2 32773076 32773076 C T BIRC6 Silent p.L4324L 0.24 TCGA-33-4538-01 2 32855589 32855589 G T TTC27 Splice_Site p.X30_splice 0.22 TCGA-33-4538-01 2 63283220 63283220 C T OTX1 Silent p.H278H 0.17 TCGA-33-4538-01 2 68882195 68882195 G T PROKR1 Silent p.V223V 0.20 TCGA-33-4538-01 2 7001388 7001388 A G CMPK2 Missense_Mutation p.Y307H 0.27 deleterious(0.02) probably_damaging(1) TCGA-33-4538-01 3 100039691 100039691 A T TBC1D23 Missense_Mutation p.I632L 0.40 tolerated(0.06) possibly_damaging(0.786) TCGA-33-4538-01 3 10191556 10191556 G A VHL Silent p.S183S 0.62 TCGA-33-4538-01 3 119367437 119367437 G A POPDC2 Nonsense_Mutation p.R227* 0.18 TCGA-33-4538-01 3 184020241 184020241 C T PSMD2 Missense_Mutation p.P263L 0.61 deleterious(0.04) benign(0.342) TCGA-33-4538-01 3 186272063 186272063 C T TBCCD1 Silent p.V508V 0.57 TCGA-33-4538-01 3 195017976 195017976 C T ACAP2 Missense_Mutation p.R477Q 0.12 tolerated(1) benign(0.011) TCGA-33-4538-01 3 36899190 36899190 G C TRANK1 Missense_Mutation p.H631D 0.06 tolerated(0.2) benign(0.001) TCGA-33-4538-01 3 42906283 42906283 G T ACKR2 Missense_Mutation p.V97L 0.64 tolerated(0.71) benign(0.014) TCGA-33-4538-01 3 42956129 42956129 G T ZNF662 Missense_Mutation p.E214D 0.45 tolerated(0.28) benign(0.124) TCGA-33-4538-01 3 48420927 48420927 T C FBXW12 Missense_Mutation p.L218P 0.57 deleterious(0) probably_damaging(0.915) TCGA-33-4538-01 3 49318254 49318254 C T USP4 Missense_Mutation p.C856Y 0.38 deleterious(0.04) benign(0.045) TCGA-33-4538-01 3 65415667 65415667 G - MAGI1 Frame_Shift_Del p.N566Ifs*4 0.28 TCGA-33-4538-01 3 93611872 93611872 G C PROS1 Missense_Mutation p.L354V 0.31 tolerated(0.06) benign(0.319) TCGA-33-4538-01 4 113505305 113505305 C G C4orf21 Missense_Mutation p.G1376A 0.30 tolerated(1) benign(0.022) TCGA-33-4538-01 4 128819593 128819593 G C PLK4 Splice_Site p.X937_splice 0.32 TCGA-33-4538-01 4 17528554 17528554 A G CLRN2 Missense_Mutation p.E183G 0.31 deleterious(0) probably_damaging(0.998) TCGA-33-4538-01 4 177142317 177142317 A G ASB5 Missense_Mutation p.L220P 0.50 deleterious(0) probably_damaging(0.995) TCGA-33-4538-01 4 5577977 5577977 G T EVC2 Missense_Mutation p.H1088N 0.58 deleterious(0.02) benign(0.218) TCGA-33-4538-01 4 59997 59997 A T ZNF595 Silent p.I59I 0.06 TCGA-33-4538-01 4 76573882 76573882 C T G3BP2 Missense_Mutation p.R290H 0.67 deleterious(0.04) probably_damaging(0.997) TCGA-33-4538-01 5 1443164 1443164 G A SLC6A3 Missense_Mutation p.P50L 0.32 deleterious(0.01) benign(0.029) TCGA-33-4538-01 5 167882517 167882517 G T WWC1 Missense_Mutation p.V939L 0.47 deleterious(0.01) benign(0.05) TCGA-33-4538-01 5 180424385 180424385 T A BTNL3 Missense_Mutation p.D190E 0.74 tolerated(0.05) possibly_damaging(0.578) TCGA-33-4538-01 5 21842269 21842269 C T CDH12 Splice_Site p.X272_splice 0.13 TCGA-33-4538-01 5 23509677 23509677 G T PRDM9 Missense_Mutation p.R56S 0.30 deleterious_low_confidence(0) benign(0.13) TCGA-33-4538-01 5 33643489 33643489 C T ADAMTS12 Silent p.E522E 0.31 TCGA-33-4538-01 5 66478990 66478990 G A CD180 Missense_Mutation p.R561C 0.47 deleterious(0.04) benign(0.134) TCGA-33-4538-01 5 82499434 82499434 G C XRCC4 Silent p.L182L 0.28 TCGA-33-4538-01 5 93077080 93077080 G T POU5F2 Missense_Mutation p.P64T 0.54 deleterious(0) benign(0.003) TCGA-33-4538-01 6 105219851 105219851 T A HACE1 Missense_Mutation p.R655W 0.35 deleterious(0.02) probably_damaging(0.985) TCGA-33-4538-01 6 132967052 132967052 C G TAAR1 Missense_Mutation p.V31L 0.26 tolerated(0.35) benign(0.002) TCGA-33-4538-01 6 144074909 144074909 A T PHACTR2 Missense_Mutation p.N105I 0.14 deleterious(0) probably_damaging(0.999) TCGA-33-4538-01 6 27806045 27806045 G T HIST1H2AK Missense_Mutation p.Q25K 0.19 deleterious_low_confidence(0.02) benign(0.159) TCGA-33-4538-01 6 28829537 28829537 G A XXbac-BPG308K3.6 RNA 0.42 TCGA-33-4538-01 6 29012353 29012353 G A OR2W1 Silent p.F200F 0.19 TCGA-33-4538-01 6 29323508 29323508 G A OR5V1 Silent p.N155N 0.39 TCGA-33-4538-01 6 33423675 33423675 G T ZBTB9 Missense_Mutation p.E266D 0.18 tolerated(0.46) benign(0.005) TCGA-33-4538-01 6 44971458 44971458 G A SUPT3H Nonsense_Mutation p.Q157* 0.11 TCGA-33-4538-01 6 52053995 52053995 G T IL17A Nonsense_Mutation p.E125* 0.40 TCGA-33-4538-01 6 90604623 90604623 A G GJA10 Missense_Mutation p.K146E 0.47 deleterious(0) probably_damaging(0.957) TCGA-33-4538-01 7 103004738 103004738 A C PSMC2 Missense_Mutation p.Q247P 0.37 deleterious(0) probably_damaging(0.998) TCGA-33-4538-01 7 116166568 116166568 G T CAV1 Intron 0.39 TCGA-33-4538-01 7 123150084 123150084 C A IQUB Missense_Mutation p.V135F 0.18 tolerated(0.23) benign(0.101) TCGA-33-4538-01 7 141491164 141491164 A C TAS2R5 3'UTR 0.31 TCGA-33-4538-01 7 143556250 143556250 C T FAM115A Nonsense_Mutation p.W724* 0.13 TCGA-33-4538-01 7 158723180 158723180 T C WDR60 Silent p.H840H 0.33 TCGA-33-4538-01 7 21584692 21584692 T C DNAH11 Silent p.N140N 0.60 TCGA-33-4538-01 7 37927962 37927962 T A NME8 Missense_Mutation p.I444K 0.31 deleterious(0) probably_damaging(0.965) TCGA-33-4538-01 7 51097005 51097005 T A COBL Missense_Mutation p.E596D 0.20 tolerated(0.53) benign(0.006) TCGA-33-4538-01 7 92940500 92940500 A G CCDC132 Missense_Mutation p.S591G 0.35 tolerated(0.1) benign(0.076) TCGA-33-4538-01 7 95665060 95665060 G A DYNC1I1 Missense_Mutation p.G471R 0.36 deleterious(0) probably_damaging(1) TCGA-33-4538-01 7 99909456 99909456 C A SPDYE3 Missense_Mutation p.P210T 0.23 tolerated(0.64) benign(0.014) TCGA-33-4538-01 8 120569722 120569722 C A ENPP2 3'UTR 0.29 TCGA-33-4538-01 8 132996486 132996486 C G EFR3A Missense_Mutation p.T559S 0.42 tolerated(0.78) benign(0.042) TCGA-33-4538-01 8 139629158 139629158 C T COL22A1 Missense_Mutation p.R1290Q 0.10 unknown(0) TCGA-33-4538-01 8 144658690 144658690 A T NAPRT1 Missense_Mutation p.Y312N 0.24 deleterious(0) probably_damaging(0.999) TCGA-33-4538-01 8 19192231 19192231 A C SH2D4A Missense_Mutation p.K126Q 0.44 tolerated(0.28) benign(0.028) TCGA-33-4538-01 8 22548882 22548882 C A EGR3 Missense_Mutation p.A90S 0.23 tolerated(1) possibly_damaging(0.773) TCGA-33-4538-01 8 38186925 38186925 A G WHSC1L1 Missense_Mutation p.F518L 0.26 tolerated(0.66) benign(0.001) TCGA-33-4538-01 8 41574571 41574571 T C ANK1 Splice_Site p.X469_splice 0.24 TCGA-33-4538-01 8 64099962 64099962 T C YTHDF3 Missense_Mutation p.F464L 0.26 deleterious(0) benign(0.294) TCGA-33-4538-01 8 77690550 77690550 G T ZFHX4 Missense_Mutation p.R1067L 0.29 benign(0.433) TCGA-33-4538-01 8 77763734 77763734 G A ZFHX4 Missense_Mutation p.G1526E 0.41 probably_damaging(0.969) TCGA-33-4538-01 8 77763735 77763735 G T ZFHX4 Silent p.G1526G 0.38 TCGA-33-4538-01 9 114521017 114521017 A G C9orf84 Missense_Mutation p.L121S 0.36 tolerated(0.11) benign(0.066) TCGA-33-4538-01 9 21971114 21971115 CG A CDKN2A Frame_Shift_Del p.V82Cfs*64 0.37 TCGA-33-4538-01 9 34976568 34976568 G A KIAA1045 Missense_Mutation p.R227H 0.59 deleterious(0) benign(0.006) TCGA-33-4538-01 9 37740403 37740403 C G FRMPD1 Silent p.T626T 0.57 TCGA-33-4538-01 9 39149829 39149829 C G CNTNAP3 Missense_Mutation p.Q541H 0.16 tolerated(0.32) benign(0.311) TCGA-33-4538-01 9 96061478 96061478 G T WNK2 Missense_Mutation p.R2054L 0.35 unknown(0) TCGA-33-4538-01 X 128926392 128926392 G T SASH3 Silent p.R177R 0.66 TCGA-33-4538-01 X 135795454 135795454 G T ARHGEF6 Missense_Mutation p.P270T 0.76 deleterious(0) probably_damaging(0.954) TCGA-33-4538-01 X 139586835 139586835 C A SOX3 Missense_Mutation p.G131C 0.66 deleterious(0.01) probably_damaging(0.996) TCGA-33-4538-01 X 26157221 26157221 C T MAGEB18 Missense_Mutation p.P40L 0.30 tolerated(0.11) benign(0.008) TCGA-33-4538-01 X 30237487 30237487 C G MAGEB2 Missense_Mutation p.P264A 0.79 tolerated(0.14) benign(0.163) TCGA-33-4538-01 X 44896929 44896929 A G KDM6A Missense_Mutation p.T217A 0.45 deleterious(0.05) benign(0.101) TCGA-33-4538-01 X 49083500 49083500 C - CACNA1F Frame_Shift_Del p.G403Afs*41 0.35 TCGA-33-4538-01 X 50052359 50052359 G C CCNB3 Missense_Mutation p.R397P 0.19 tolerated(0.22) benign(0.138) TCGA-33-4547-01 10 101980409 101980409 T C CHUK Missense_Mutation p.E137G 0.17 tolerated(0.15) benign(0.075) TCGA-33-4547-01 10 102505910 102505910 C T PAX2 5'UTR 0.10 TCGA-33-4547-01 10 105184879 105184879 G C PDCD11 Missense_Mutation p.E968Q 0.26 tolerated(0.11) possibly_damaging(0.685) TCGA-33-4547-01 10 121616948 121616948 G C MCMBP Missense_Mutation p.Q111E 0.19 tolerated(0.69) benign(0.079) TCGA-33-4547-01 10 124708165 124708165 C G C10orf88 Silent p.R216R 0.17 TCGA-33-4547-01 10 135083439 135083448 TGTAAACGTG - ADAM8 Frame_Shift_Del p.H606Dfs*36 0.09 TCGA-33-4547-01 10 15639281 15639281 G T ITGA8 Missense_Mutation p.S712R 0.24 deleterious(0) possibly_damaging(0.821) TCGA-33-4547-01 10 3202450 3202450 G A PITRM1 Silent p.F288F 0.22 TCGA-33-4547-01 10 32581966 32581966 C T EPC1 Missense_Mutation p.D206N 0.17 tolerated(0.38) probably_damaging(0.998) TCGA-33-4547-01 10 436246 436246 G A DIP2C Silent p.F484F 0.24 TCGA-33-4547-01 10 50819868 50819868 C T SLC18A3 Missense_Mutation p.A361V 0.16 deleterious(0.03) possibly_damaging(0.899) TCGA-33-4547-01 10 99221792 99221792 G A MMS19 Silent p.S699S 0.27 TCGA-33-4547-01 11 111618706 111618706 A G PPP2R1B Silent p.S457S 0.20 TCGA-33-4547-01 11 118509911 118509911 G A PHLDB1 Missense_Mutation p.R893K 0.16 tolerated(0.19) benign(0.358) TCGA-33-4547-01 11 118851317 118851317 C T FOXR1 Silent p.S243S 0.20 TCGA-33-4547-01 11 118916131 118916131 G A HYOU1 3'UTR 0.19 TCGA-33-4547-01 11 57971290 57971290 C T OR1S2 Missense_Mutation p.V122I 0.18 tolerated(0.47) benign(0.005) TCGA-33-4547-01 11 58035329 58035329 A T OR10W1 Translation_Start_Site p.M1? 0.27 deleterious(0) benign(0.077) TCGA-33-4547-01 11 64694350 64694350 C T PPP2R5B Silent p.I122I 0.19 TCGA-33-4547-01 11 73066920 73066920 G A ARHGEF17 Silent p.E1195E 0.17 TCGA-33-4547-01 11 94134045 94134045 G C GPR83 Silent p.L123L 0.27 TCGA-33-4547-01 11 94300723 94300723 C T PIWIL4 Silent p.A13A 0.22 TCGA-33-4547-01 12 100452907 100452907 T C UHRF1BP1L Missense_Mutation p.I716M 0.26 tolerated(0.06) benign(0.181) TCGA-33-4547-01 12 102158641 102158641 G C GNPTAB Nonsense_Mutation p.S685* 0.10 TCGA-33-4547-01 12 112087808 112087808 C G BRAP Missense_Mutation p.E450D 0.20 tolerated(0.22) benign(0.015) TCGA-33-4547-01 12 120903553 120903553 C G SRSF9 Missense_Mutation p.D76H 0.15 deleterious(0.03) benign(0.159) TCGA-33-4547-01 12 120995234 120995234 C G RNF10 Missense_Mutation p.I265M 0.34 deleterious(0) probably_damaging(0.996) TCGA-33-4547-01 12 132445647 132445647 C G EP400 Silent p.L161L 0.18 TCGA-33-4547-01 12 133372731 133372731 G C GOLGA3 Missense_Mutation p.L726V 0.19 tolerated(0.07) benign(0.023) TCGA-33-4547-01 12 133733132 133733132 G C ZNF10 Missense_Mutation p.E434Q 0.23 deleterious(0.05) benign(0.077) TCGA-33-4547-01 12 16757859 16757859 C G LMO3 Intron 0.08 TCGA-33-4547-01 12 26277070 26277074 TTCTT - BHLHE41 Frame_Shift_Del p.R57Pfs*3 0.22 TCGA-33-4547-01 12 50037728 50037728 G C PRPF40B Missense_Mutation p.E843Q 0.21 tolerated_low_confidence(0.23) probably_damaging(0.923) TCGA-33-4547-01 12 52992774 52992774 C A KRT72 Silent p.L183L 0.07 TCGA-33-4547-01 12 56553920 56553920 C G MYL6 Missense_Mutation p.L113V 0.28 deleterious(0) possibly_damaging(0.904) TCGA-33-4547-01 12 57008797 57008797 C A BAZ2A Splice_Site p.X246_splice 0.20 TCGA-33-4547-01 12 62996892 62996892 G C C12orf61 Missense_Mutation p.S76W 0.35 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-33-4547-01 12 6601379 6601379 C A MRPL51 3'UTR 0.06 TCGA-33-4547-01 12 81762563 81762563 C G PPFIA2 Missense_Mutation p.E475Q 0.24 deleterious(0) possibly_damaging(0.607) TCGA-33-4547-01 14 103372057 103372063 ATATTAA - TRAF3 Frame_Shift_Del p.Y548* 0.54 TCGA-33-4547-01 14 105419662 105419662 A T AHNAK2 Missense_Mutation p.V709E 0.47 probably_damaging(0.986) TCGA-33-4547-01 14 45587322 45587322 C T FKBP3 Missense_Mutation p.E177K 0.14 tolerated(0.11) benign(0.304) TCGA-33-4547-01 14 52182111 52182111 C A FRMD6 Nonsense_Mutation p.C306* 0.32 TCGA-33-4547-01 14 64988550 64988550 C G ZBTB1 Missense_Mutation p.P110A 0.39 deleterious(0) probably_damaging(0.998) TCGA-33-4547-01 14 64988812 64988812 C T ZBTB1 Missense_Mutation p.S197F 0.33 deleterious(0.01) possibly_damaging(0.467) TCGA-33-4547-01 14 88904590 88904590 G A SPATA7 Missense_Mutation p.E542K 0.10 deleterious(0.04) possibly_damaging(0.773) TCGA-33-4547-01 15 37391693 37391693 G C MEIS2 5'UTR 0.13 TCGA-33-4547-01 15 40544699 40544699 C G C15orf56 Silent p.A91A 0.16 TCGA-33-4547-01 15 44085983 44085983 C T SERF2 Missense_Mutation p.S109L 0.04 tolerated_low_confidence(0.84) benign(0.32) TCGA-33-4547-01 15 58834752 58834752 G A LIPC Missense_Mutation p.R159Q 0.14 tolerated(0.47) possibly_damaging(0.768) TCGA-33-4547-01 15 62223364 62223364 G C VPS13C Nonsense_Mutation p.S1988* 0.52 TCGA-33-4547-01 15 75762273 75762273 G A PTPN9 Missense_Mutation p.S476L 0.62 deleterious(0.03) benign(0.028) TCGA-33-4547-01 15 89424863 89424863 C T HAPLN3 Missense_Mutation p.R73H 0.40 tolerated(1) benign(0.01) TCGA-33-4547-01 16 1499072 1499072 C T CLCN7 Silent p.L564L 0.53 TCGA-33-4547-01 16 15831356 15831356 G C MYH11 Silent p.L1088L 0.22 TCGA-33-4547-01 16 15841585 15841585 G C MYH11 Missense_Mutation p.I758M 0.17 benign(0.159) TCGA-33-4547-01 16 16110447 16110447 C T ABCC1 Missense_Mutation p.S195L 0.24 tolerated(0.09) benign(0.002) TCGA-33-4547-01 16 28497729 28497729 C T CLN3 Missense_Mutation p.G206S 0.57 deleterious(0.01) probably_damaging(1) TCGA-33-4547-01 16 28856350 28856350 G A TUFM Silent p.L147L 0.32 TCGA-33-4547-01 16 51185160 51185160 C G SALL1 5'UTR 0.44 TCGA-33-4547-01 16 58030723 58030723 C T ZNF319 Missense_Mutation p.E483K 0.29 deleterious(0) possibly_damaging(0.84) TCGA-33-4547-01 16 67184165 67184165 G A B3GNT9 Missense_Mutation p.P75L 0.28 deleterious(0.01) possibly_damaging(0.459) TCGA-33-4547-01 16 68598214 68598214 G C ZFP90 Missense_Mutation p.R508S 0.15 tolerated(0.46) benign(0.121) TCGA-33-4547-01 16 89704569 89704569 G A DPEP1 Missense_Mutation p.R392H 0.33 tolerated(0.67) benign(0.302) TCGA-33-4547-01 16 9857426 9857426 G A GRIN2A Silent p.Y1325Y 0.44 TCGA-33-4547-01 17 11711192 11711192 A C DNAH9 Missense_Mutation p.Y2855S 0.07 probably_damaging(0.991) TCGA-33-4547-01 17 40818455 40818455 C A TUBG2 Missense_Mutation p.H371N 0.06 tolerated(0.43) benign(0.029) TCGA-33-4547-01 17 42086113 42086113 C G NAGS 3'UTR 0.27 TCGA-33-4547-01 17 6916010 6916010 C A RNASEK Nonsense_Mutation p.S42* 0.28 TCGA-33-4547-01 17 7484226 7484226 C G CD68 Missense_Mutation p.S258W 0.28 deleterious(0) probably_damaging(0.983) TCGA-33-4547-01 17 7577127 7577127 C T TP53 Missense_Mutation p.E271K 0.38 deleterious(0) probably_damaging(0.999) TCGA-33-4547-01 18 48604754 48604754 G T SMAD4 Nonsense_Mutation p.E526* 0.33 TCGA-33-4547-01 18 61390669 61390669 G C SERPINB11 3'UTR 0.26 TCGA-33-4547-01 18 72632478 72632478 G T ZNF407 Missense_Mutation p.C1753F 0.20 deleterious(0) probably_damaging(0.999) TCGA-33-4547-01 19 10624743 10624743 G A S1PR5 Silent p.H315H 0.14 TCGA-33-4547-01 19 13930269 13930269 C G ZSWIM4 Missense_Mutation p.P558A 0.16 tolerated(0.86) unknown(0) TCGA-33-4547-01 19 17581502 17581502 G C SLC27A1 Silent p.A51A 0.60 TCGA-33-4547-01 19 18864380 18864380 A G CRTC1 Silent p.A219A 0.21 TCGA-33-4547-01 19 3179147 3179147 C T S1PR4 Silent p.F119F 0.14 TCGA-33-4547-01 19 36673603 36673603 T A ZNF565 Missense_Mutation p.K422M 0.14 deleterious(0.02) probably_damaging(0.992) TCGA-33-4547-01 19 41248484 41248484 G A C19orf54 Nonsense_Mutation p.Q304* 0.14 TCGA-33-4547-01 19 42824544 42824554 TGGCATCCAGC - TMEM145 Frame_Shift_Del p.I385Dfs*46 0.10 TCGA-33-4547-01 19 42872647 42872647 G T MEGF8 Missense_Mutation p.G2038V 0.22 deleterious(0) probably_damaging(1) TCGA-33-4547-01 19 44236979 44236979 C G SMG9 Intron 0.27 TCGA-33-4547-01 19 46215941 46215941 G T FBXO46 Silent p.P271P 0.18 TCGA-33-4547-01 19 49564524 49564524 G A NTF4 3'UTR 0.22 TCGA-33-4547-01 19 49601727 49601727 G C SNRNP70 Missense_Mutation p.K103N 0.11 deleterious(0.04) possibly_damaging(0.863) TCGA-33-4547-01 19 49631272 49631272 G A PPFIA3 Missense_Mutation p.E48K 0.12 deleterious(0) benign(0.359) TCGA-33-4547-01 19 50017655 50017655 C T FCGRT Silent p.A171A 0.29 TCGA-33-4547-01 19 51957955 51957955 G C SIGLEC8 Missense_Mutation p.F377L 0.18 tolerated(0.67) benign(0.078) TCGA-33-4547-01 19 56220262 56220262 T C NLRP9 3'UTR 0.27 TCGA-33-4547-01 19 58452800 58452800 C G ZNF256 Missense_Mutation p.G459A 0.23 deleterious(0.01) probably_damaging(0.94) TCGA-33-4547-01 19 6433624 6433624 G C SLC25A41 Missense_Mutation p.I27M 0.13 tolerated_low_confidence(0.25) benign(0.001) TCGA-33-4547-01 1 100661809 100661809 C G DBT 3'UTR 0.26 TCGA-33-4547-01 1 10342554 10342554 C G KIF1B Missense_Mutation p.S420C 0.25 tolerated(0.16) probably_damaging(0.996) TCGA-33-4547-01 1 10380147 10380147 G A KIF1B Missense_Mutation p.R675Q 0.21 tolerated(0.56) benign(0.116) TCGA-33-4547-01 1 109756748 109756748 G A SARS Missense_Mutation p.R45Q 0.07 tolerated(0.54) benign(0.003) TCGA-33-4547-01 1 110148995 110148995 G C GNAT2 Silent p.L175L 0.27 TCGA-33-4547-01 1 110921905 110921905 G C SLC16A4 Missense_Mutation p.I200M 0.15 tolerated(0.08) benign(0.213) TCGA-33-4547-01 1 150551448 150551448 G A MCL1 Missense_Mutation p.R187W 0.10 deleterious(0.02) benign(0.049) TCGA-33-4547-01 1 152382343 152382343 C T CRNN Silent p.Q405Q 0.23 TCGA-33-4547-01 1 155263135 155263135 C T PKLR Splice_Site p.X424_splice 0.24 TCGA-33-4547-01 1 155264083 155264083 C G PKLR Missense_Mutation p.Q353H 0.26 deleterious(0) probably_damaging(0.986) TCGA-33-4547-01 1 155874207 155874207 G T RIT1 Missense_Mutation p.F125L 0.23 deleterious(0.04) possibly_damaging(0.575) TCGA-33-4547-01 1 1666131 1666131 G A SLC35E2 Nonsense_Mutation p.Q244* 0.16 TCGA-33-4547-01 1 172011204 172011204 C T DNM3 Nonsense_Mutation p.Q350* 0.19 TCGA-33-4547-01 1 173826783 173826783 G C DARS2 Silent p.L626L 0.16 TCGA-33-4547-01 1 184023991 184023991 A G TSEN15 Missense_Mutation p.H116R 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-33-4547-01 1 19494528 19494528 G C UBR4 Missense_Mutation p.L1298V 0.27 probably_damaging(0.939) TCGA-33-4547-01 1 200635181 200635181 G C DDX59 Missense_Mutation p.Q230E 0.23 deleterious(0) probably_damaging(0.999) TCGA-33-4547-01 1 200635425 200635425 G A DDX59 Silent p.L148L 0.22 TCGA-33-4547-01 1 200635460 200635460 G T DDX59 Missense_Mutation p.L137I 0.27 tolerated(0.21) benign(0.291) TCGA-33-4547-01 1 214531328 214531328 G A PTPN14 Silent p.I1167I 0.23 TCGA-33-4547-01 1 22202777 22202777 C G HSPG2 Missense_Mutation p.R983T 0.38 benign(0.001) TCGA-33-4547-01 1 234569206 234569206 G C TARBP1 Missense_Mutation p.L782V 0.17 tolerated(0.21) benign(0.003) TCGA-33-4547-01 1 234569302 234569302 G T TARBP1 Missense_Mutation p.R750S 0.21 deleterious(0) probably_damaging(0.979) TCGA-33-4547-01 1 235922354 235922360 CAACAAG - LYST Frame_Shift_Del p.L2265Ifs*29 0.33 TCGA-33-4547-01 1 235945292 235945292 G T LYST Nonsense_Mutation p.S1653* 0.32 TCGA-33-4547-01 1 236208960 236208960 T C NID1 Silent p.L183L 0.26 TCGA-33-4547-01 1 237659980 237659980 G A RYR2 Missense_Mutation p.E711K 0.37 possibly_damaging(0.539) TCGA-33-4547-01 1 240370862 240370862 G A FMN2 Missense_Mutation p.G917E 0.31 unknown(0) TCGA-33-4547-01 1 246923314 246923314 T A SCCPDH Missense_Mutation p.M290K 0.15 deleterious(0.03) benign(0.255) TCGA-33-4547-01 1 25617255 25617255 G A RHD Silent p.L153L 0.45 TCGA-33-4547-01 1 66036310 66036310 G C LEPR Missense_Mutation p.E65D 0.17 tolerated(0.26) benign(0.015) TCGA-33-4547-01 1 6700080 6700080 G A DNAJC11 Missense_Mutation p.H379Y 0.19 tolerated(0.08) benign(0.052) TCGA-33-4547-01 1 67558694 67558694 G A C1orf141 Silent p.A399A 0.18 TCGA-33-4547-01 1 89615179 89615179 T A GBP7 Silent p.A316A 0.21 TCGA-33-4547-01 1 99418658 99418658 C A LPPR5 Missense_Mutation p.A197S 0.19 tolerated(0.18) probably_damaging(0.978) TCGA-33-4547-01 20 13782282 13782282 G C NDUFAF5 Missense_Mutation p.D224H 0.12 deleterious(0) probably_damaging(1) TCGA-33-4547-01 20 34204067 34204067 G T SPAG4 Nonsense_Mutation p.E48* 0.18 TCGA-33-4547-01 20 34204119 34204119 G C SPAG4 Missense_Mutation p.G65A 0.43 tolerated_low_confidence(0.1) possibly_damaging(0.806) TCGA-33-4547-01 20 35312861 35312861 A G NDRG3 Missense_Mutation p.M113T 0.11 deleterious(0) benign(0.05) TCGA-33-4547-01 20 44538310 44538310 G A PLTP Silent p.F110F 0.20 TCGA-33-4547-01 20 51872765 51872765 A G TSHZ2 Missense_Mutation p.H923R 0.24 deleterious(0) benign(0.046) TCGA-33-4547-01 20 56227337 56227337 C T PMEPA1 Silent p.S212S 0.19 TCGA-33-4547-01 20 57009745 57009745 C G VAPB Nonsense_Mutation p.S100* 0.16 TCGA-33-4547-01 20 57769737 57769737 C T ZNF831 Silent p.P1221P 0.20 TCGA-33-4547-01 21 35127600 35127600 A T ITSN1 Splice_Site p.X208_splice 0.29 TCGA-33-4547-01 22 19197964 19197964 T A CLTCL1 Missense_Mutation p.M1041L 0.22 deleterious(0.05) probably_damaging(0.994) TCGA-33-4547-01 22 32011205 32011205 G A SFI1 Silent p.P1080P 0.32 TCGA-33-4547-01 22 38119983 38119983 C G TRIOBP Missense_Mutation p.R474G 0.18 deleterious_low_confidence(0.02) benign(0) TCGA-33-4547-01 22 38245426 38245426 C G EIF3L 5'UTR 0.25 TCGA-33-4547-01 22 38469093 38469093 G A PICK1 Silent p.E259E 0.31 TCGA-33-4547-01 22 39777839 39777839 G A SYNGR1 Missense_Mutation p.A208T 0.23 tolerated(0.68) benign(0.001) TCGA-33-4547-01 22 39908484 39908484 C G MIEF1 Silent p.L190L 0.18 TCGA-33-4547-01 22 40061891 40061891 C G CACNA1I Missense_Mutation p.F1328L 0.21 deleterious(0.01) benign(0.418) TCGA-33-4547-01 22 45789624 45789624 G C SMC1B Missense_Mutation p.L479V 0.23 tolerated(0.27) benign(0.003) TCGA-33-4547-01 22 46859695 46859695 G A CELSR1 Silent p.I1364I 0.28 TCGA-33-4547-01 2 102959613 102959613 A T IL1RL1 Missense_Mutation p.Q267L 0.28 tolerated(0.07) benign(0.41) TCGA-33-4547-01 2 109383853 109383853 G A RANBP2 Silent p.Q2286Q 0.19 TCGA-33-4547-01 2 111428129 111428129 G A BUB1 Missense_Mutation p.L147F 0.18 tolerated(0.7) benign(0.438) TCGA-33-4547-01 2 137917884 137917884 T G THSD7B Missense_Mutation p.S491A 0.21 deleterious(0.04) benign(0.198) TCGA-33-4547-01 2 137917917 137917917 C G THSD7B Missense_Mutation p.H502D 0.09 tolerated(0.73) benign(0.402) TCGA-33-4547-01 2 141457836 141457836 C G LRP1B Missense_Mutation p.R2261T 0.25 benign(0.227) TCGA-33-4547-01 2 165987921 165987921 T G SCN3A Missense_Mutation p.T800P 0.05 deleterious(0) probably_damaging(0.953) TCGA-33-4547-01 2 179576712 179576712 C A TTN Missense_Mutation p.S9282I 0.11 TCGA-33-4547-01 2 1796159 1796159 G A MYT1L Silent p.L1116L 0.42 TCGA-33-4547-01 2 185800831 185800831 C A ZNF804A Nonsense_Mutation p.Y236* 0.26 TCGA-33-4547-01 2 197521510 197521510 C G CCDC150 Silent p.L110L 0.24 TCGA-33-4547-01 2 201437262 201437262 T G SGOL2 Missense_Mutation p.N731K 0.25 tolerated(0.07) benign(0.105) TCGA-33-4547-01 2 201477490 201477490 G C AOX1 Missense_Mutation p.K474N 0.16 tolerated(0.27) benign(0.098) TCGA-33-4547-01 2 209190867 209190867 C G PIKFYVE Missense_Mutation p.S1111C 0.21 deleterious(0.01) benign(0.345) TCGA-33-4547-01 2 209192962 209192962 C G PIKFYVE Missense_Mutation p.S1226C 0.30 deleterious(0) probably_damaging(0.998) TCGA-33-4547-01 2 239184406 239184406 G A PER2 Silent p.L142L 0.04 TCGA-33-4547-01 2 27147901 27147901 G T DPYSL5 Missense_Mutation p.W136C 0.17 tolerated(0.12) probably_damaging(1) TCGA-33-4547-01 2 27479355 27479355 C T SLC30A3 Missense_Mutation p.R306Q 0.21 tolerated(0.06) benign(0.121) TCGA-33-4547-01 2 47135052 47135052 G A MCFD2 Missense_Mutation p.P69L 0.24 deleterious(0) possibly_damaging(0.877) TCGA-33-4547-01 2 48741994 48741994 T G PPP1R21 3'UTR 0.62 TCGA-33-4547-01 2 49381409 49381409 C T FSHR Missense_Mutation p.E50K 0.15 tolerated(0.77) possibly_damaging(0.766) TCGA-33-4547-01 2 73682351 73682351 G A ALMS1 Missense_Mutation p.D2534N 0.21 probably_damaging(0.997) TCGA-33-4547-01 2 74653636 74653636 G A RTKN Silent p.L476L 0.19 TCGA-33-4547-01 3 101044705 101044705 C G SENP7 3'UTR 0.23 TCGA-33-4547-01 3 121137260 121137260 G A STXBP5L Missense_Mutation p.M1125I 0.15 tolerated(0.1) benign(0.005) TCGA-33-4547-01 3 121350620 121350620 G A HCLS1 3'UTR 0.19 TCGA-33-4547-01 3 125216804 125216804 G C SNX4 Silent p.L141L 0.16 TCGA-33-4547-01 3 128580691 128580691 G A RP11-723O4.9 5'Flank 0.14 TCGA-33-4547-01 3 141304930 141304930 C G RASA2 Missense_Mutation p.L606V 0.31 deleterious(0) possibly_damaging(0.745) TCGA-33-4547-01 3 168838844 168838844 A C MECOM Missense_Mutation p.C255G 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-33-4547-01 3 170800083 170800083 C G TNIK Missense_Mutation p.Q1090H 0.21 deleterious(0) probably_damaging(0.998) TCGA-33-4547-01 3 178938934 178938934 G A PIK3CA Missense_Mutation p.E726K 0.14 tolerated(0.36) benign(0.4) TCGA-33-4547-01 3 183655727 183655727 G C ABCC5 Missense_Mutation p.I1272M 0.08 tolerated(0.06) possibly_damaging(0.883) TCGA-33-4547-01 3 186502264 186502264 G C EIF4A2 Missense_Mutation p.E25Q 0.07 tolerated_low_confidence(0.1) benign(0.025) TCGA-33-4547-01 3 187416707 187416707 G A RTP2 Missense_Mutation p.S86L 0.11 tolerated(0.11) benign(0.418) TCGA-33-4547-01 3 193151649 193151649 G A ATP13A4 Missense_Mutation p.L943F 0.16 tolerated(0.07) benign(0.282) TCGA-33-4547-01 3 196434643 196434643 C A CEP19 Nonsense_Mutation p.E95* 0.08 TCGA-33-4547-01 3 196434703 196434703 C G CEP19 Missense_Mutation p.E75Q 0.11 tolerated(0.22) benign(0.02) TCGA-33-4547-01 3 38627355 38627355 C T SCN5A Missense_Mutation p.D872N 0.04 tolerated(0.47) benign(0.005) TCGA-33-4547-01 3 48964987 48964987 C T ARIH2 5'UTR 0.17 TCGA-33-4547-01 3 49699829 49699829 C T BSN Silent p.A3517A 0.35 TCGA-33-4547-01 3 56787587 56787587 A G ARHGEF3 Missense_Mutation p.F160S 0.33 deleterious(0) possibly_damaging(0.893) TCGA-33-4547-01 4 106155466 106155466 C A TET2 Missense_Mutation p.R123S 0.07 tolerated(0.89) benign(0) TCGA-33-4547-01 4 106157923 106157923 C T TET2 Missense_Mutation p.P942S 0.33 deleterious(0.04) possibly_damaging(0.715) TCGA-33-4547-01 4 122775966 122775966 C G BBS7 Missense_Mutation p.G204A 0.11 deleterious(0.03) possibly_damaging(0.481) TCGA-33-4547-01 4 128724970 128724970 C T HSPA4L Missense_Mutation p.L284F 0.31 deleterious(0.01) possibly_damaging(0.628) TCGA-33-4547-01 4 134073688 134073688 A C PCDH10 Missense_Mutation p.N798T 0.14 tolerated(0.11) benign(0.155) TCGA-33-4547-01 4 169835086 169835086 C T PALLD Silent p.I877I 0.23 TCGA-33-4547-01 4 6064080 6064080 C T JAKMIP1 Missense_Mutation p.E507K 0.28 deleterious(0.01) benign(0.125) TCGA-33-4547-01 4 77276503 77276503 C A CCDC158 Nonsense_Mutation p.E754* 0.25 TCGA-33-4547-01 4 77662003 77662003 C T SHROOM3 Nonsense_Mutation p.Q893* 0.17 TCGA-33-4547-01 5 100222116 100222116 A T ST8SIA4 Missense_Mutation p.V145D 0.29 probably_damaging(0.998) TCGA-33-4547-01 5 113698641 113698641 G T KCNN2 Missense_Mutation p.A57S 0.38 tolerated_low_confidence(0.7) unknown(0) TCGA-33-4547-01 5 140209689 140209689 G C PCDHA6 Missense_Mutation p.E671D 0.36 tolerated_low_confidence(0.53) benign(0.062) TCGA-33-4547-01 5 140725244 140725244 G A PCDHGA3 Silent p.L548L 0.43 TCGA-33-4547-01 5 14693101 14693101 G C FAM105B Missense_Mutation p.E335Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-33-4547-01 5 168093540 168093540 G A SLIT3 Silent p.Y1497Y 0.09 TCGA-33-4547-01 5 56778146 56778146 G T ACTBL2 Missense_Mutation p.T130K 0.09 deleterious_low_confidence(0.01) probably_damaging(0.964) TCGA-33-4547-01 5 77072069 77072069 G T TBCA Missense_Mutation p.R5S 0.20 deleterious(0.03) benign(0.039) TCGA-33-4547-01 5 7727361 7727361 C T ADCY2 Missense_Mutation p.L620F 0.12 tolerated(0.15) benign(0.177) TCGA-33-4547-01 5 89986823 89986823 G C GPR98 Missense_Mutation p.E2306Q 0.31 possibly_damaging(0.727) TCGA-33-4547-01 6 109700790 109700790 T C CD164 Missense_Mutation p.E84G 0.17 deleterious(0.03) probably_damaging(0.982) TCGA-33-4547-01 6 110300475 110300475 C G GPR6 Missense_Mutation p.L54V 0.12 tolerated(0.33) benign(0.364) TCGA-33-4547-01 6 112389443 112389443 T A WISP3 Missense_Mutation p.C227S 0.41 deleterious(0) probably_damaging(0.973) TCGA-33-4547-01 6 142726910 142726910 C G GPR126 Missense_Mutation p.S738C 0.20 tolerated(0.18) possibly_damaging(0.646) TCGA-33-4547-01 6 144086763 144086763 G A PHACTR2 Missense_Mutation p.E354K 0.14 tolerated_low_confidence(0.14) benign(0.008) TCGA-33-4547-01 6 152690680 152690680 C T SYNE1 Missense_Mutation p.E3193K 0.22 benign(0.143) TCGA-33-4547-01 6 160183177 160183177 G A ACAT2 Intron 0.38 TCGA-33-4547-01 6 160183190 160183190 G A ACAT2 Intron 0.31 TCGA-33-4547-01 6 165809938 165809938 C T PDE10A Missense_Mutation p.R430K 0.10 tolerated(0.71) possibly_damaging(0.784) TCGA-33-4547-01 6 26123911 26123911 G A HIST1H2BC Silent p.I74I 0.25 TCGA-33-4547-01 6 32163533 32163533 C G NOTCH4 Missense_Mutation p.R1898P 0.36 tolerated_low_confidence(0.16) benign(0.003) TCGA-33-4547-01 6 85446684 85446684 G C TBX18 Missense_Mutation p.Q515E 0.17 deleterious(0.01) possibly_damaging(0.9) TCGA-33-4547-01 6 96651713 96651713 G A FUT9 Missense_Mutation p.D228N 0.17 tolerated(0.65) benign(0.102) TCGA-33-4547-01 7 102574360 102574360 G C LRRC17 5'UTR 0.13 TCGA-33-4547-01 7 103124174 103124174 G A RELN Silent p.I3369I 0.33 TCGA-33-4547-01 7 127528043 127528043 G C SND1 Missense_Mutation p.E478Q 0.08 tolerated(0.24) benign(0.068) TCGA-33-4547-01 7 38502604 38502604 C T AMPH Missense_Mutation p.A287T 0.12 tolerated(0.07) possibly_damaging(0.79) TCGA-33-4547-01 7 71175772 71175772 C A WBSCR17 Missense_Mutation p.F509L 0.17 tolerated(0.86) benign(0.003) TCGA-33-4547-01 7 88423766 88423766 G A C7orf62 Missense_Mutation p.S164L 0.16 deleterious(0.04) possibly_damaging(0.81) TCGA-33-4547-01 7 90338909 90338909 C T CDK14 Silent p.F18F 0.13 TCGA-33-4547-01 7 91631106 91631106 G C AKAP9 Silent p.L625L 0.09 TCGA-33-4547-01 7 98951667 98951667 C G ARPC1A Missense_Mutation p.F212L 0.20 deleterious(0) probably_damaging(0.948) TCGA-33-4547-01 7 99971947 99971947 G T PILRA Silent p.L115L 0.04 TCGA-33-4547-01 8 113697958 113697958 G A CSMD3 Missense_Mutation p.P720L 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-33-4547-01 8 143740389 143740389 G C JRK RNA 0.14 TCGA-33-4547-01 8 144459598 144459598 G C RHPN1 Missense_Mutation p.K118N 0.17 deleterious(0) possibly_damaging(0.795) TCGA-33-4547-01 8 145748825 145748825 G C LRRC14 3'UTR 0.25 TCGA-33-4547-01 8 25293004 25293004 G C KCTD9 Missense_Mutation p.L230V 0.23 deleterious(0) probably_damaging(0.994) TCGA-33-4547-01 8 42821647 42821647 C T HOOK3 Missense_Mutation p.R271C 0.40 deleterious(0) probably_damaging(0.997) TCGA-33-4547-01 8 48877253 48877253 G A MCM4 Missense_Mutation p.M271I 0.22 deleterious(0) benign(0.285) TCGA-33-4547-01 8 89180185 89180185 G C MMP16 Missense_Mutation p.P141R 0.23 deleterious(0.01) probably_damaging(1) TCGA-33-4547-01 9 101611252 101611252 G A GALNT12 Missense_Mutation p.E542K 0.37 tolerated(0.82) benign(0.003) TCGA-33-4547-01 9 128419946 128419946 G C MAPKAP1 Missense_Mutation p.S161C 0.17 tolerated(0.11) possibly_damaging(0.519) TCGA-33-4547-01 9 133556880 133556880 C T PRDM12 Nonsense_Mutation p.Q310* 0.27 TCGA-33-4547-01 9 135042122 135042122 G C NTNG2 5'UTR 0.36 TCGA-33-4547-01 9 136671274 136671274 C T VAV2 Silent p.L255L 0.22 TCGA-33-4547-01 9 137677895 137677895 G C COL5A1 Splice_Site p.X882_splice 0.22 TCGA-33-4547-01 9 138679993 138679993 C T KCNT1 Intron 0.32 TCGA-33-4547-01 9 21974704 21974733 CGGTGCGTTGGGCAGCGCCCCCGCCTCCAG - CDKN2A In_Frame_Del p.L32_P41del 0.15 TCGA-33-4547-01 9 5921511 5921511 C T KIAA2026 Silent p.A1495A 0.30 TCGA-33-4547-01 9 72897444 72897444 G A SMC5 Missense_Mutation p.R309Q 0.32 tolerated(0.1) benign(0.064) TCGA-33-4547-01 9 95264875 95264875 G C ECM2 Silent p.T508T 0.17 TCGA-33-4547-01 X 152037559 152037559 G A NSDHL Missense_Mutation p.E341K 0.40 tolerated(0.16) benign(0.035) TCGA-33-4547-01 X 152915069 152915069 C A DUSP9 Nonsense_Mutation p.Y252* 0.04 TCGA-33-4547-01 X 16881153 16881153 G A RBBP7 Silent p.L122L 0.37 TCGA-33-4547-01 X 52825601 52825601 G A SPANXN5 Missense_Mutation p.S49L 0.10 tolerated(0.51) benign(0.001) TCGA-33-4566-01 10 102256950 102256950 T C SEC31B Missense_Mutation p.E693G 0.47 deleterious(0.01) possibly_damaging(0.609) TCGA-33-4566-01 10 102586823 102586824 CT A PAX2 Frame_Shift_Del p.A383Dfs*10 0.22 TCGA-33-4566-01 10 105036977 105036977 C G INA Missense_Mutation p.F3L 0.29 tolerated(0.08) benign(0.002) TCGA-33-4566-01 10 105178383 105178383 G T PDCD11 Missense_Mutation p.G700W 0.30 deleterious(0.01) possibly_damaging(0.664) TCGA-33-4566-01 10 105178384 105178384 G T PDCD11 Missense_Mutation p.G700V 0.30 tolerated(0.16) benign(0.323) TCGA-33-4566-01 10 105648830 105648830 G A OBFC1 Missense_Mutation p.H317Y 0.26 tolerated(0.35) benign(0.152) TCGA-33-4566-01 10 105971806 105971806 C A WDR96 Missense_Mutation p.A232S 0.17 tolerated(0.07) possibly_damaging(0.833) TCGA-33-4566-01 10 106121841 106121841 G T CCDC147 Nonsense_Mutation p.E118* 0.20 TCGA-33-4566-01 10 106159223 106159223 G T CCDC147 Missense_Mutation p.G594W 0.15 deleterious(0) possibly_damaging(0.672) TCGA-33-4566-01 10 108337107 108337107 G T SORCS1 Intron 0.21 TCGA-33-4566-01 10 108439016 108439016 G T SORCS1 Missense_Mutation p.Q580K 0.42 deleterious(0.03) benign(0.083) TCGA-33-4566-01 10 108589406 108589406 C T SORCS1 Missense_Mutation p.E218K 0.36 tolerated(0.2) possibly_damaging(0.688) TCGA-33-4566-01 10 115350405 115350405 G T NRAP Missense_Mutation p.Q1630K 0.22 tolerated(0.15) benign(0.094) TCGA-33-4566-01 10 116361718 116361718 C A ABLIM1 Missense_Mutation p.A83S 0.21 tolerated(0.69) benign(0.003) TCGA-33-4566-01 10 116734977 116734978 - T TRUB1 Frame_Shift_Ins p.D298* 0.31 TCGA-33-4566-01 10 117154178 117154178 G C ATRNL1 Missense_Mutation p.C1062S 0.42 deleterious(0) probably_damaging(0.996) TCGA-33-4566-01 10 118236770 118236770 C G PNLIPRP3 3'UTR 0.27 TCGA-33-4566-01 10 119044377 119044377 C T PDZD8 Missense_Mutation p.V623M 0.42 tolerated_low_confidence(0.13) benign(0.044) TCGA-33-4566-01 10 120514286 120514286 C T CACUL1 5'UTR 0.15 TCGA-33-4566-01 10 121286930 121286930 T A RGS10 Missense_Mutation p.H19L 0.42 deleterious(0.01) benign(0.266) TCGA-33-4566-01 10 122348813 122348813 A G PPAPDC1A Splice_Site p.X206_splice 0.20 TCGA-33-4566-01 10 127426970 127426970 G T EDRF1 Missense_Mutation p.G646V 0.35 deleterious(0.02) benign(0.283) TCGA-33-4566-01 10 128830580 128830580 G T DOCK1 Missense_Mutation p.Q615H 0.44 deleterious(0) benign(0.106) TCGA-33-4566-01 10 131967730 131967730 G T GLRX3 Missense_Mutation p.M249I 0.46 deleterious(0.01) possibly_damaging(0.57) TCGA-33-4566-01 10 134016258 134016258 G A DPYSL4 Missense_Mutation p.G464R 0.17 deleterious(0) probably_damaging(0.966) TCGA-33-4566-01 10 134660783 134660783 C T TTC40 Missense_Mutation p.V1999I 0.45 tolerated(0.22) benign(0.035) TCGA-33-4566-01 10 135102436 135102436 C G TUBGCP2 Silent p.A511A 0.17 TCGA-33-4566-01 10 1405856 1405856 C A ADARB2 Silent p.T148T 0.46 TCGA-33-4566-01 10 1421339 1421339 C A ADARB2 Missense_Mutation p.L39F 0.17 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-33-4566-01 10 14867509 14867509 C A CDNF Missense_Mutation p.K118N 0.42 deleterious(0) probably_damaging(0.978) TCGA-33-4566-01 10 16893320 16893320 C A CUBN Missense_Mutation p.V3193L 0.22 tolerated(0.33) benign(0.213) TCGA-33-4566-01 10 16930512 16930512 G T CUBN Missense_Mutation p.P2937T 0.16 deleterious(0) probably_damaging(1) TCGA-33-4566-01 10 17362871 17362871 C A ST8SIA6 3'UTR 0.19 TCGA-33-4566-01 10 26446322 26446322 G T MYO3A Missense_Mutation p.Q959H 0.36 tolerated(0.07) benign(0.05) TCGA-33-4566-01 10 26790169 26790169 C A APBB1IP Intron 0.14 TCGA-33-4566-01 10 26830589 26830589 A T APBB1IP Nonsense_Mutation p.K375* 0.19 TCGA-33-4566-01 10 27475597 27475597 G A MASTL 3'UTR 0.46 TCGA-33-4566-01 10 27702954 27702954 G A PTCHD3 Missense_Mutation p.P76S 0.17 tolerated(0.62) benign(0.032) TCGA-33-4566-01 10 38345566 38345566 G T ZNF33A 3'UTR 0.50 TCGA-33-4566-01 10 45473174 45473174 A G C10orf10 Missense_Mutation p.V102A 0.35 tolerated(1) possibly_damaging(0.728) TCGA-33-4566-01 10 48429028 48429028 G T GDF10 Silent p.P286P 0.46 TCGA-33-4566-01 10 49633232 49633232 G T MAPK8 Intron 0.27 TCGA-33-4566-01 10 50530616 50530616 C A C10orf71 Missense_Mutation p.T9K 0.33 deleterious(0) possibly_damaging(0.888) TCGA-33-4566-01 10 55780053 55780053 C G PCDH15 Missense_Mutation p.A884P 0.17 deleterious(0.02) benign(0.435) TCGA-33-4566-01 10 56287599 56287599 C T PCDH15 Missense_Mutation p.V44I 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.685) TCGA-33-4566-01 10 60556226 60556226 G T BICC1 Missense_Mutation p.G436C 0.35 deleterious(0.04) probably_damaging(0.948) TCGA-33-4566-01 10 64159503 64159503 C T ZNF365 Intron 0.37 TCGA-33-4566-01 10 6506291 6506291 C A PRKCQ Missense_Mutation p.D477Y 0.41 deleterious(0) benign(0.053) TCGA-33-4566-01 10 69908183 69908183 C A MYPN Missense_Mutation p.Q402K 0.20 tolerated(0.89) benign(0) TCGA-33-4566-01 10 70412277 70412277 G T TET1 Missense_Mutation p.A1463S 0.39 deleterious(0.02) probably_damaging(0.917) TCGA-33-4566-01 10 72358511 72358511 G T PRF1 Silent p.P322P 0.44 TCGA-33-4566-01 10 73464784 73464784 C A CDH23 Silent p.T542T 0.27 TCGA-33-4566-01 10 7608323 7608323 C A ITIH5 Missense_Mutation p.G733C 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-33-4566-01 10 76603051 76603051 C A KAT6B Missense_Mutation p.P146T 0.51 benign(0.257) TCGA-33-4566-01 10 78943265 78943265 C T KCNMA1 Nonsense_Mutation p.W241* 0.30 TCGA-33-4566-01 10 8006076 8006077 - G TAF3 Frame_Shift_Ins p.D203Gfs*69 0.33 TCGA-33-4566-01 10 8116083 8116083 A T GATA3 3'UTR 0.50 TCGA-33-4566-01 10 82185667 82185667 G T FAM213A Missense_Mutation p.G106C 0.20 deleterious(0) probably_damaging(0.995) TCGA-33-4566-01 10 82369182 82369182 G T SH2D4B Splice_Site p.X287_splice 0.23 TCGA-33-4566-01 10 82369183 82369183 G T SH2D4B Missense_Mutation p.R287S 0.23 tolerated(0.08) benign(0.037) TCGA-33-4566-01 10 88123739 88123739 T A GRID1 Missense_Mutation p.K65M 0.20 deleterious(0.02) possibly_damaging(0.905) TCGA-33-4566-01 10 88423458 88423458 C T OPN4 Nonsense_Mutation p.Q444* 0.37 TCGA-33-4566-01 10 91486107 91486107 G A KIF20B Intron 0.42 TCGA-33-4566-01 10 94381142 94381142 G C KIF11 Missense_Mutation p.E377Q 0.42 deleterious(0) possibly_damaging(0.844) TCGA-33-4566-01 10 95892039 95892039 G T PLCE1 Missense_Mutation p.G439C 0.42 deleterious_low_confidence(0) benign(0.013) TCGA-33-4566-01 10 97135751 97135751 C T SORBS1 Silent p.S572S 0.14 TCGA-33-4566-01 10 97607164 97607164 C G ENTPD1 Intron 0.50 TCGA-33-4566-01 10 99025697 99025697 C A ARHGAP19 Missense_Mutation p.G81V 0.21 deleterious(0) probably_damaging(0.999) TCGA-33-4566-01 10 99025847 99025847 G A ARHGAP19 Missense_Mutation p.S31F 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.498) TCGA-33-4566-01 11 100933286 100933286 C A PGR Nonsense_Mutation p.G702* 0.21 TCGA-33-4566-01 11 100933287 100933287 T A PGR Silent p.A701A 0.22 TCGA-33-4566-01 11 100999141 100999141 C A PGR Missense_Mutation p.V221F 0.17 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-33-4566-01 11 102477371 102477371 G T MMP20 Missense_Mutation p.P283H 0.22 deleterious(0) probably_damaging(0.99) TCGA-33-4566-01 11 103908673 103908673 G A DDI1 Missense_Mutation p.G375R 0.29 deleterious(0.02) benign(0.031) TCGA-33-4566-01 11 104034758 104034758 C A PDGFD 5'UTR 0.27 TCGA-33-4566-01 11 104776272 104776272 C A RP11-693N9.2 RNA 0.16 TCGA-33-4566-01 11 107966404 107966404 A T CUL5 Missense_Mutation p.R631W 0.19 deleterious(0) probably_damaging(1) TCGA-33-4566-01 11 108047022 108047022 T A NPAT Silent p.A361A 0.22 TCGA-33-4566-01 11 108168091 108168091 G T ATM Missense_Mutation p.G1663C 0.21 deleterious(0) probably_damaging(0.971) TCGA-33-4566-01 11 113857310 113857310 T C HTR3A Missense_Mutation p.M265T 0.23 deleterious(0.04) benign(0.105) TCGA-33-4566-01 11 113857737 113857737 C T HTR3A Silent p.T407T 0.22 TCGA-33-4566-01 11 113860256 113860256 G T HTR3A Missense_Mutation p.S441I 0.26 tolerated(0.19) benign(0.185) TCGA-33-4566-01 11 114121265 114121265 G T ZBTB16 Silent p.L670L 0.38 TCGA-33-4566-01 11 116701610 116701610 C T APOC3 Silent p.A59A 0.14 TCGA-33-4566-01 11 117031909 117031909 G T PAFAH1B2 Missense_Mutation p.G74W 0.26 deleterious(0.04) probably_damaging(0.994) TCGA-33-4566-01 11 117647604 117647604 C A DSCAML1 Missense_Mutation p.R198L 0.22 tolerated(0.07) probably_damaging(0.999) TCGA-33-4566-01 11 118403633 118403633 C G TMEM25 Missense_Mutation p.F128L 0.29 tolerated(0.07) possibly_damaging(0.54) TCGA-33-4566-01 11 118939923 118939939 CTGGTTCTTGCCACGTT TCTTGCCACGTTC VPS11 Frame_Shift_Del p.W69Lfs*17 0.19 TCGA-33-4566-01 11 118983091 118983091 G A C2CD2L Missense_Mutation p.S358N 0.31 tolerated(0.5) benign(0.003) TCGA-33-4566-01 11 119148970 119148970 G T CBL Missense_Mutation p.G397V 0.26 deleterious(0) probably_damaging(0.992) TCGA-33-4566-01 11 119243748 119243748 C A USP2 Missense_Mutation p.R148L 0.23 deleterious_low_confidence(0) benign(0.187) TCGA-33-4566-01 11 119535975 119535975 C A PVRL1 Missense_Mutation p.G346W 0.21 deleterious(0.01) benign(0.43) TCGA-33-4566-01 11 11985863 11985863 G T DKK3 3'UTR 0.57 TCGA-33-4566-01 11 120352171 120352171 G A ARHGEF12 Nonsense_Mutation p.W1480* 0.30 TCGA-33-4566-01 11 121430366 121430366 G A SORL1 Missense_Mutation p.G1017R 0.25 deleterious(0) probably_damaging(1) TCGA-33-4566-01 11 123900904 123900904 C A OR10G8 Nonsense_Mutation p.S192* 0.20 TCGA-33-4566-01 11 124189528 124189528 C A OR8D2 Missense_Mutation p.C189F 0.26 deleterious(0) probably_damaging(0.999) TCGA-33-4566-01 11 124757010 124757010 G A ROBO4 Silent p.S766S 0.18 TCGA-33-4566-01 11 124766560 124766560 C A ROBO4 Missense_Mutation p.R136L 0.30 tolerated(0.1) benign(0.35) TCGA-33-4566-01 11 130058447 130058447 G T ST14 Missense_Mutation p.K88N 0.26 deleterious(0) probably_damaging(0.97) TCGA-33-4566-01 11 132527091 132527091 C G OPCML Missense_Mutation p.Q97H 0.25 deleterious(0.01) benign(0.071) TCGA-33-4566-01 11 17450148 17450148 G T ABCC8 Silent p.P629P 0.43 TCGA-33-4566-01 11 17741293 17741293 G T MYOD1 5'UTR 0.42 TCGA-33-4566-01 11 19209755 19209755 C T CSRP3 Missense_Mutation p.G70E 0.46 deleterious(0) probably_damaging(0.918) TCGA-33-4566-01 11 20177907 20177907 G A DBX1 Silent p.S334S 0.34 TCGA-33-4566-01 11 20515791 20515791 G C PRMT3 Missense_Mutation p.V493L 0.55 benign(0.007) TCGA-33-4566-01 11 20940811 20940811 C A NELL1 Nonsense_Mutation p.C230* 0.57 TCGA-33-4566-01 11 22301327 22301327 A C ANO5 3'UTR 0.34 TCGA-33-4566-01 11 27148882 27148882 G A BBOX1 Missense_Mutation p.R349Q 0.37 deleterious(0) probably_damaging(1) TCGA-33-4566-01 11 30033380 30033380 C T KCNA4 Silent p.R282R 0.21 TCGA-33-4566-01 11 30516883 30516883 C A MPPED2 Nonsense_Mutation p.E166* 0.35 TCGA-33-4566-01 11 30953472 30953472 G C DCDC1 Missense_Mutation p.L915V 0.44 deleterious(0.01) possibly_damaging(0.567) TCGA-33-4566-01 11 32119896 32119896 G T RCN1 Missense_Mutation p.G150V 0.30 tolerated(0.13) benign(0.04) TCGA-33-4566-01 11 32460663 32460663 C T WT1 5'Flank 0.41 TCGA-33-4566-01 11 33612940 33612940 C A KIAA1549L Missense_Mutation p.T1278N 0.36 deleterious(0.01) probably_damaging(0.989) TCGA-33-4566-01 11 35496275 35496275 G - PAMR1 Frame_Shift_Del p.R133Efs*14 0.13 TCGA-33-4566-01 11 36597797 36597797 G T RAG1 Missense_Mutation p.Q981H 0.44 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-33-4566-01 11 3661139 3661139 C A ART5 Missense_Mutation p.D174Y 0.51 deleterious(0) possibly_damaging(0.905) TCGA-33-4566-01 11 40137179 40137179 C A LRRC4C Missense_Mutation p.D222Y 0.11 deleterious(0) possibly_damaging(0.82) TCGA-33-4566-01 11 4510584 4510584 G T OR52K1 Missense_Mutation p.A152S 0.43 tolerated(0.05) benign(0.099) TCGA-33-4566-01 11 4567167 4567167 T A OR52M1 Nonsense_Mutation p.C249* 0.50 TCGA-33-4566-01 11 4674143 4674143 C G OR51E1 Missense_Mutation p.I129M 0.65 deleterious(0) probably_damaging(1) TCGA-33-4566-01 11 46911596 46911596 T C LRP4 Missense_Mutation p.N664S 0.17 tolerated(0.7) benign(0.034) TCGA-33-4566-01 11 47357557 47357557 G T MYBPC3 Missense_Mutation p.P870T 0.42 tolerated(1) benign(0.13) TCGA-33-4566-01 11 47469657 47469657 C G RAPSN Missense_Mutation p.D80H 0.14 deleterious(0.02) probably_damaging(0.937) TCGA-33-4566-01 11 47711888 47711888 C A AGBL2 Missense_Mutation p.L457F 0.41 tolerated(0.06) possibly_damaging(0.451) TCGA-33-4566-01 11 47744565 47744565 G A FNBP4 Missense_Mutation p.P923L 0.40 tolerated(0.27) benign(0.009) TCGA-33-4566-01 11 47800632 47800632 T A NUP160 3'UTR 0.49 TCGA-33-4566-01 11 5152960 5152960 G T OR52A5 Missense_Mutation p.H305N 0.51 deleterious(0.04) benign(0.002) TCGA-33-4566-01 11 5290708 5290708 C A HBE1 Silent p.L97L 0.44 TCGA-33-4566-01 11 55036793 55036794 - T TRIM48 Frame_Shift_Ins p.D219* 0.18 TCGA-33-4566-01 11 55038309 55038309 C G TRIM48 3'UTR 0.22 TCGA-33-4566-01 11 55405873 55405873 G T OR4P4 Missense_Mutation p.G14W 0.63 deleterious(0) probably_damaging(0.999) TCGA-33-4566-01 11 55541387 55541387 C A OR5D13 Silent p.S158S 0.40 TCGA-33-4566-01 11 55607085 55607085 G T OR5D16 Missense_Mutation p.L286F 0.47 deleterious(0) benign(0.028) TCGA-33-4566-01 11 55761264 55761264 C A OR5F1 Missense_Mutation p.V280L 0.38 tolerated(0.23) benign(0.068) TCGA-33-4566-01 11 55761943 55761943 G C OR5F1 Silent p.S53S 0.47 TCGA-33-4566-01 11 55798057 55798057 C A OR5AS1 Missense_Mutation p.L55I 0.15 deleterious(0) probably_damaging(0.994) TCGA-33-4566-01 11 55904716 55904716 G A OR8J3 Missense_Mutation p.S160L 0.20 deleterious(0) possibly_damaging(0.515) TCGA-33-4566-01 11 55944330 55944330 C A OR5J2 Silent p.P79P 0.20 TCGA-33-4566-01 11 56043850 56043850 A T OR5T1 Missense_Mutation p.R246W 0.21 deleterious(0.01) possibly_damaging(0.654) TCGA-33-4566-01 11 56057656 56057656 C A OR8H1 Nonsense_Mutation p.E295* 0.39 TCGA-33-4566-01 11 56230508 56230508 C A OR5M9 Missense_Mutation p.G124C 0.16 deleterious(0) benign(0.012) TCGA-33-4566-01 11 56409760 56409760 A T OR5AP2 Silent p.I52I 0.14 TCGA-33-4566-01 11 56468339 56468339 C A OR9G1 Missense_Mutation p.T159N 0.12 deleterious(0.01) probably_damaging(0.982) TCGA-33-4566-01 11 57003959 57003959 C A APLNR Nonsense_Mutation p.E174* 0.32 TCGA-33-4566-01 11 57069957 57069957 G - TNKS1BP1 Frame_Shift_Del p.S1554Vfs*72 0.21 TCGA-33-4566-01 11 57099251 57099251 C A SSRP1 Missense_Mutation p.D372Y 0.46 deleterious(0) probably_damaging(0.91) TCGA-33-4566-01 11 57995616 57995616 G T OR10Q1 Silent p.S244S 0.51 TCGA-33-4566-01 11 5862226 5862226 C A OR52E6 Missense_Mutation p.R301M 0.52 deleterious(0) possibly_damaging(0.606) TCGA-33-4566-01 11 58979250 58979250 G T MPEG1 Missense_Mutation p.N363K 0.45 deleterious(0) probably_damaging(1) TCGA-33-4566-01 11 59828757 59828757 G T MS4A3 Missense_Mutation p.D42Y 0.19 deleterious(0.01) benign(0.298) TCGA-33-4566-01 11 6007816 6007816 G T OR52L1 Nonsense_Mutation p.C115* 0.53 TCGA-33-4566-01 11 60296844 60296845 GG T MS4A13 Frame_Shift_Del p.G105* 0.17 TCGA-33-4566-01 11 61645001 61645001 C A FADS3 Silent p.L289L 0.21 TCGA-33-4566-01 11 62290294 62290294 C T AHNAK Silent p.E3865E 0.28 TCGA-33-4566-01 11 62591750 62591750 T C STX5 Missense_Mutation p.I266V 0.24 tolerated(0.25) benign(0.074) TCGA-33-4566-01 11 64453121 64453121 G T NRXN2 Silent p.R383R 0.29 TCGA-33-4566-01 11 6500011 6500011 C A ARFIP2 Missense_Mutation p.G165V 0.53 deleterious(0) probably_damaging(0.954) TCGA-33-4566-01 11 65113402 65113402 C G DPF2 Silent p.S259S 0.19 TCGA-33-4566-01 11 65338992 65338992 A T SSSCA1 Silent p.A129A 0.21 TCGA-33-4566-01 11 65397058 65397058 G T PCNXL3 Silent p.L1356L 0.21 TCGA-33-4566-01 11 65714655 65714655 G T TSGA10IP RNA 0.33 TCGA-33-4566-01 11 66083426 66083426 G T CD248 Missense_Mutation p.A358D 0.24 deleterious_low_confidence(0.01) benign(0.295) TCGA-33-4566-01 11 66083757 66083757 C A CD248 Nonsense_Mutation p.E248* 0.27 TCGA-33-4566-01 11 66444332 66444332 C G RBM4B Missense_Mutation p.K73N 0.27 deleterious(0) benign(0.334) TCGA-33-4566-01 11 67223588 67223588 C T CABP4 Intron 0.31 TCGA-33-4566-01 11 6898600 6898600 C A OR10A4 Missense_Mutation p.T241N 0.58 deleterious(0) probably_damaging(0.989) TCGA-33-4566-01 11 6913008 6913008 C A OR2D2 Missense_Mutation p.G242C 0.41 deleterious(0) probably_damaging(0.972) TCGA-33-4566-01 11 69514229 69514229 C A FGF19 Missense_Mutation p.R151L 0.32 deleterious(0) probably_damaging(0.928) TCGA-33-4566-01 11 70332401 70332401 C T SHANK2 Missense_Mutation p.E1334K 0.16 tolerated(0.15) benign(0.305) TCGA-33-4566-01 11 70332942 70332942 C T SHANK2 Silent p.E1153E 0.27 TCGA-33-4566-01 11 71184686 71184686 G C NADSYN1 Missense_Mutation p.R207P 0.21 deleterious(0) probably_damaging(0.987) TCGA-33-4566-01 11 71277026 71277026 G T KRTAP5-10 Missense_Mutation p.K131N 0.23 unknown(0) TCGA-33-4566-01 11 74047787 74047787 T C PGM2L1 Silent p.L593L 0.32 TCGA-33-4566-01 11 77091007 77091007 T A PAK1 Missense_Mutation p.I75F 0.23 deleterious(0) possibly_damaging(0.743) TCGA-33-4566-01 11 78467872 78467872 C A TENM4 Missense_Mutation p.G912W 0.12 tolerated(0.05) benign(0.021) TCGA-33-4566-01 11 7960899 7960899 C A OR10A3 Missense_Mutation p.V57F 0.43 deleterious(0) benign(0.385) TCGA-33-4566-01 11 82536103 82536103 C G PRCP Missense_Mutation p.V467L 0.30 tolerated(0.14) benign(0.033) TCGA-33-4566-01 11 83585492 83585492 C T DLG2 Missense_Mutation p.M512I 0.29 tolerated(0.29) benign(0.002) TCGA-33-4566-01 11 85630407 85630407 G T CCDC83 Missense_Mutation p.G397C 0.30 deleterious(0) probably_damaging(1) TCGA-33-4566-01 11 89028510 89028510 C A TYR Missense_Mutation p.H522Q 0.14 tolerated(0.52) benign(0.002) TCGA-33-4566-01 11 89028511 89028511 A G TYR Missense_Mutation p.S523G 0.17 tolerated(0.23) benign(0.002) TCGA-33-4566-01 11 89424086 89424086 A G FOLH1B RNA 0.26 TCGA-33-4566-01 11 89896533 89896533 C A NAALAD2 Missense_Mutation p.D377E 0.24 deleterious(0) probably_damaging(1) TCGA-33-4566-01 11 92088254 92088254 C A FAT3 Silent p.I992I 0.27 TCGA-33-4566-01 11 92534453 92534453 A T FAT3 Silent p.I2758I 0.25 TCGA-33-4566-01 11 92564924 92564924 G T FAT3 Silent p.R3206R 0.23 TCGA-33-4566-01 11 92577660 92577660 C G FAT3 Missense_Mutation p.S3709R 0.17 benign(0.017) TCGA-33-4566-01 11 95595495 95595495 C A MTMR2 Missense_Mutation p.A100S 0.23 tolerated(0.29) benign(0.012) TCGA-33-4566-01 12 10137593 10137593 C - CLEC12A Frame_Shift_Del p.Q266Sfs*18 0.32 TCGA-33-4566-01 12 102046932 102046932 A T MYBPC1 Missense_Mutation p.N533I 0.50 deleterious(0) probably_damaging(1) TCGA-33-4566-01 12 103310894 103310894 G T PAH Silent p.V5V 0.53 TCGA-33-4566-01 12 104089513 104089513 A T STAB2 Splice_Site p.X1159_splice 0.60 TCGA-33-4566-01 12 104712786 104712789 GTCT - TXNRD1 Frame_Shift_Del p.V276Mfs*88 0.52 TCGA-33-4566-01 12 105583577 105583577 C G APPL2 Missense_Mutation p.E484Q 0.62 tolerated(0.25) possibly_damaging(0.743) TCGA-33-4566-01 12 106477667 106477667 A T NUAK1 Missense_Mutation p.L185Q 0.49 deleterious(0) probably_damaging(1) TCGA-33-4566-01 12 108169386 108169386 C T ASCL4 Nonsense_Mutation p.Q132* 0.70 TCGA-33-4566-01 12 10978682 10978682 T C TAS2R10 Missense_Mutation p.T63A 0.46 tolerated(0.19) benign(0.02) TCGA-33-4566-01 12 110450962 110450962 G T ANKRD13A Nonsense_Mutation p.E88* 0.56 TCGA-33-4566-01 12 111099059 111099059 A T HVCN1 Silent p.P72P 0.60 TCGA-33-4566-01 12 111350900 111350900 C G MYL2 Missense_Mutation p.E134D 0.47 tolerated(0.06) possibly_damaging(0.459) TCGA-33-4566-01 12 111744741 111744741 C G CUX2 Missense_Mutation p.T292S 0.55 tolerated(0.9) benign(0) TCGA-33-4566-01 12 112743916 112743916 C A HECTD4 Missense_Mutation p.E285D 0.44 benign(0.262) TCGA-33-4566-01 12 120586073 120586073 T G GCN1L1 Missense_Mutation p.K1542Q 0.37 probably_damaging(0.972) TCGA-33-4566-01 12 124311314 124311314 C T DNAH10 Silent p.L1302L 0.52 TCGA-33-4566-01 12 124352552 124352552 G T DNAH10 Nonsense_Mutation p.G2351* 0.61 TCGA-33-4566-01 12 125900111 125900111 G T TMEM132B Missense_Mutation p.V327L 0.49 deleterious(0.02) benign(0.316) TCGA-33-4566-01 12 13526185 13526185 C A C12orf36 Nonsense_Mutation p.E124* 0.25 TCGA-33-4566-01 12 14840956 14840956 C A GUCY2C Missense_Mutation p.G87C 0.34 deleterious(0.04) possibly_damaging(0.778) TCGA-33-4566-01 12 14949838 14949838 T A WBP11 Missense_Mutation p.E97V 0.32 tolerated(0.05) unknown(0) TCGA-33-4566-01 12 15823797 15823797 C A EPS8 Missense_Mutation p.R66L 0.39 deleterious(0) benign(0.255) TCGA-33-4566-01 12 16516939 16516939 G T MGST1 Missense_Mutation p.M144I 0.44 deleterious(0) probably_damaging(1) TCGA-33-4566-01 12 18892099 18892099 A G CAPZA3 Missense_Mutation p.I299M 0.62 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-33-4566-01 12 1995152 1995152 C A CACNA2D4 Missense_Mutation p.Q349H 0.51 deleterious(0) probably_damaging(0.995) TCGA-33-4566-01 12 20522893 20522893 C A PDE3A Silent p.S225S 0.21 TCGA-33-4566-01 12 21331906 21331906 G T SLCO1B1 Nonsense_Mutation p.G227* 0.58 TCGA-33-4566-01 12 21643203 21643203 C G RECQL Missense_Mutation p.E108D 0.19 tolerated(1) benign(0.001) TCGA-33-4566-01 12 22487129 22487129 C A ST8SIA1 Missense_Mutation p.R13I 0.20 tolerated_low_confidence(0.09) benign(0.022) TCGA-33-4566-01 12 250438 250438 C A IQSEC3 Missense_Mutation p.R714S 0.18 deleterious(0.04) probably_damaging(0.982) TCGA-33-4566-01 12 26750058 26750058 C A ITPR2 Missense_Mutation p.G1338W 0.55 deleterious(0) probably_damaging(0.977) TCGA-33-4566-01 12 26807026 26807026 C A ITPR2 Nonsense_Mutation p.G875* 0.17 TCGA-33-4566-01 12 27829480 27829480 G T PPFIBP1 Silent p.R527R 0.61 TCGA-33-4566-01 12 29423493 29423493 G A FAR2 Silent p.L37L 0.64 TCGA-33-4566-01 12 29628067 29628067 C A OVCH1 Silent p.T509T 0.28 TCGA-33-4566-01 12 29648348 29648348 G C OVCH1 Missense_Mutation p.S108R 0.19 deleterious(0.01) possibly_damaging(0.579) TCGA-33-4566-01 12 31236942 31236942 G A DDX11 Missense_Mutation p.V114I 0.23 tolerated(0.72) benign(0.007) TCGA-33-4566-01 12 40740726 40740726 G T LRRK2 Splice_Site p.X2094_splice 0.42 TCGA-33-4566-01 12 41327336 41327336 G C CNTN1 Silent p.V259V 0.45 TCGA-33-4566-01 12 47178371 47178371 C A SLC38A4 Silent p.P149P 0.47 TCGA-33-4566-01 12 49431527 49431527 T A KMT2D Silent p.P3204P 0.35 TCGA-33-4566-01 12 5154071 5154071 C G KCNA5 Missense_Mutation p.A253G 0.39 deleterious(0.01) probably_damaging(0.996) TCGA-33-4566-01 12 52828050 52828050 G T KRT75 Missense_Mutation p.S13R 0.59 tolerated(0.08) benign(0.021) TCGA-33-4566-01 12 55795096 55795096 G C OR6C65 Missense_Mutation p.A262P 0.53 deleterious_low_confidence(0.01) benign(0.4) TCGA-33-4566-01 12 56030896 56030896 C A OR10P1 Missense_Mutation p.T74N 0.62 tolerated(0.13) probably_damaging(1) TCGA-33-4566-01 12 5603961 5603961 G C NTF3 Missense_Mutation p.R207P 0.41 deleterious(0.01) probably_damaging(0.986) TCGA-33-4566-01 12 57346753 57346753 C A RDH16 Silent p.G198G 0.47 TCGA-33-4566-01 12 58126641 58126641 C A AGAP2 Silent p.R557R 0.55 TCGA-33-4566-01 12 59268065 59268065 T A LRIG3 Missense_Mutation p.S963C 0.57 deleterious_low_confidence(0.02) benign(0.013) TCGA-33-4566-01 12 6125732 6125732 A T VWF Nonsense_Mutation p.L1754* 0.36 TCGA-33-4566-01 12 62261207 62261207 C A FAM19A2 Intron 0.58 TCGA-33-4566-01 12 6438776 6438776 G A TNFRSF1A Missense_Mutation p.A357V 0.12 tolerated(0.15) benign(0.313) TCGA-33-4566-01 12 6645907 6645907 G A GAPDH Missense_Mutation p.E63K 0.41 tolerated_low_confidence(0.27) benign(0.017) TCGA-33-4566-01 12 69962853 69962853 G T FRS2 Missense_Mutation p.D15Y 0.56 deleterious(0) probably_damaging(0.999) TCGA-33-4566-01 12 7023263 7023263 G C LRRC23 3'UTR 0.41 TCGA-33-4566-01 12 72372758 72372758 G C TPH2 Missense_Mutation p.V278L 0.57 deleterious(0) probably_damaging(0.998) TCGA-33-4566-01 12 78225094 78225095 - T NAV3 5'UTR 0.34 TCGA-33-4566-01 12 78400815 78400815 C G NAV3 Silent p.T499T 0.47 TCGA-33-4566-01 12 85255331 85255331 G A SLC6A15 3'UTR 0.44 TCGA-33-4566-01 12 85677442 85677442 G T ALX1 Missense_Mutation p.V107L 0.50 tolerated(0.13) benign(0.018) TCGA-33-4566-01 12 85677506 85677506 C G ALX1 Missense_Mutation p.S128C 0.46 deleterious(0.01) probably_damaging(0.956) TCGA-33-4566-01 12 8629926 8629926 C T CLEC6A Silent p.L166L 0.23 TCGA-33-4566-01 12 92814818 92814818 C T CLLU1OS Missense_Mutation p.D92N 0.51 tolerated_low_confidence(1) benign(0) TCGA-33-4566-01 12 9356370 9356370 G C PZP Silent p.S87S 0.25 TCGA-33-4566-01 12 9845509 9845509 G T CLEC2D Missense_Mutation p.G148V 0.27 deleterious(0) probably_damaging(0.964) TCGA-33-4566-01 12 9875205 9875205 G T CLECL1 3'UTR 0.41 TCGA-33-4566-01 12 99225845 99225845 C T ANKS1B Missense_Mutation p.D950N 0.82 deleterious(0) benign(0.309) TCGA-33-4566-01 13 101735197 101735197 G T NALCN Missense_Mutation p.T1243K 0.47 tolerated(0.25) possibly_damaging(0.727) TCGA-33-4566-01 13 110815855 110815855 C A COL4A1 Missense_Mutation p.G1402C 0.37 probably_damaging(1) TCGA-33-4566-01 13 20025324 20025324 A G TPTE2 Silent p.Y261Y 0.49 TCGA-33-4566-01 13 23915357 23915357 C G SACS Missense_Mutation p.Q886H 0.29 possibly_damaging(0.744) TCGA-33-4566-01 13 25275055 25275055 A T ATP12A Missense_Mutation p.I632F 0.54 deleterious(0) probably_damaging(1) TCGA-33-4566-01 13 26153025 26153025 T G ATP8A2 Missense_Mutation p.F619V 0.22 deleterious(0) probably_damaging(0.959) TCGA-33-4566-01 13 29608120 29608120 C A MTUS2 Silent p.P778P 0.50 TCGA-33-4566-01 13 32367141 32367141 G T RXFP2 Missense_Mutation p.G568W 0.51 deleterious(0) probably_damaging(1) TCGA-33-4566-01 13 36429699 36429699 C A DCLK1 Intron 0.90 TCGA-33-4566-01 13 42161739 42161739 C A VWA8 Missense_Mutation p.R1727L 0.54 deleterious(0) probably_damaging(1) TCGA-33-4566-01 13 46563198 46563198 T C ZC3H13 Missense_Mutation p.I327V 0.43 unknown(0) TCGA-33-4566-01 13 52439998 52439998 G T CCDC70 Missense_Mutation p.A162S 0.54 deleterious(0.05) probably_damaging(0.998) TCGA-33-4566-01 13 52439999 52439999 C A CCDC70 Missense_Mutation p.A162D 0.54 deleterious(0.04) probably_damaging(0.999) TCGA-33-4566-01 13 52952431 52952431 G T THSD1 Silent p.P558P 0.50 TCGA-33-4566-01 13 61102614 61102614 A G TDRD3 Missense_Mutation p.R419G 0.57 deleterious(0) probably_damaging(0.991) TCGA-33-4566-01 13 67205431 67205431 A G PCDH9 Missense_Mutation p.L1084P 0.53 deleterious(0.02) possibly_damaging(0.701) TCGA-33-4566-01 13 76432084 76432084 A T LMO7 Missense_Mutation p.S1365C 0.42 deleterious_low_confidence(0.02) benign(0.339) TCGA-33-4566-01 13 77835401 77835401 G C MYCBP2 Nonsense_Mutation p.S548* 0.50 TCGA-33-4566-01 13 86369386 86369386 C A SLITRK6 Missense_Mutation p.G420C 0.55 deleterious(0) probably_damaging(1) TCGA-33-4566-01 13 88329802 88329802 G A SLITRK5 Missense_Mutation p.G720D 0.50 tolerated(0.58) benign(0.234) TCGA-33-4566-01 13 99116047 99116047 C G STK24 Missense_Mutation p.R288P 0.37 deleterious(0) possibly_damaging(0.841) TCGA-33-4566-01 14 101350989 101350989 C A RTL1 Missense_Mutation p.G46V 0.51 deleterious_low_confidence(0.02) benign(0.307) TCGA-33-4566-01 14 102510221 102510221 G T DYNC1H1 Nonsense_Mutation p.E4175* 0.41 TCGA-33-4566-01 14 104472878 104472878 A G TDRD9 Silent p.E622E 0.38 TCGA-33-4566-01 14 105409082 105409082 C A AHNAK2 Missense_Mutation p.V4236L 0.43 possibly_damaging(0.62) TCGA-33-4566-01 14 105414415 105414415 G A AHNAK2 Missense_Mutation p.A2458V 0.44 benign(0.001) TCGA-33-4566-01 14 106174975 106174975 G T IGHA1 Missense_Mutation p.P10T 0.12 deleterious(0.01) probably_damaging(1) TCGA-33-4566-01 14 106725472 106725472 C A IGHV3-23 Missense_Mutation p.G27V 0.11 deleterious_low_confidence(0.02) benign(0.414) TCGA-33-4566-01 14 106815966 106815966 G C IGHV3-33 Missense_Mutation p.S36C 0.21 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-33-4566-01 14 106829886 106829886 G T IGHV4-34 Missense_Mutation p.S26Y 0.22 deleterious(0) probably_damaging(0.985) TCGA-33-4566-01 14 20692744 20692744 C A OR11H6 Silent p.I292I 0.20 TCGA-33-4566-01 14 20768879 20768879 C G TTC5 Missense_Mutation p.A95P 0.33 deleterious(0) probably_damaging(0.999) TCGA-33-4566-01 14 20845477 20845477 C T TEP1 Missense_Mutation p.G2017E 0.19 deleterious(0) possibly_damaging(0.907) TCGA-33-4566-01 14 21469569 21469569 G T SLC39A2 Missense_Mutation p.R254L 0.28 tolerated(0.5) benign(0.087) TCGA-33-4566-01 14 21831008 21831008 G C SUPT16H Missense_Mutation p.T537S 0.35 tolerated(0.34) benign(0.402) TCGA-33-4566-01 14 22102631 22102631 A T OR10G2 Missense_Mutation p.M123K 0.27 deleterious(0) probably_damaging(0.995) TCGA-33-4566-01 14 22217467 22217467 G A TRAV5 5'UTR 0.20 TCGA-33-4566-01 14 23871779 23871779 C T MYH6 Silent p.E345E 0.20 TCGA-33-4566-01 14 24112405 24112405 G T DHRS2 Missense_Mutation p.Q155H 0.15 deleterious(0.05) probably_damaging(0.967) TCGA-33-4566-01 14 24656300 24656300 G A IPO4 Silent p.P215P 0.22 TCGA-33-4566-01 14 24731488 24731488 G C TGM1 Missense_Mutation p.S24C 0.29 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-33-4566-01 14 24772360 24772360 G T NOP9 Silent p.L408L 0.26 TCGA-33-4566-01 14 24836417 24836417 C A NFATC4 Missense_Mutation p.P53T 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.803) TCGA-33-4566-01 14 24898088 24898088 C A CBLN3 Missense_Mutation p.G58V 0.25 deleterious(0.02) probably_damaging(0.986) TCGA-33-4566-01 14 28734244 28734244 G T BNIP3P1 RNA 0.47 TCGA-33-4566-01 14 32560672 32560672 G T ARHGAP5 Missense_Mutation p.R266I 0.23 deleterious(0.04) probably_damaging(0.947) TCGA-33-4566-01 14 33290637 33290637 G A AKAP6 Silent p.L1206L 0.20 TCGA-33-4566-01 14 36987175 36987175 C G NKX2-1 Missense_Mutation p.G172R 0.27 deleterious(0.01) possibly_damaging(0.726) TCGA-33-4566-01 14 38724579 38724579 G - CLEC14A Frame_Shift_Del p.R217Gfs*47 0.32 TCGA-33-4566-01 14 42355819 42355819 C A LRFN5 5'UTR 0.14 TCGA-33-4566-01 14 42356171 42356171 A T LRFN5 Missense_Mutation p.T115S 0.35 tolerated(0.3) benign(0.012) TCGA-33-4566-01 14 44974026 44974026 T A FSCB Missense_Mutation p.D722V 0.44 deleterious(0.01) unknown(0) TCGA-33-4566-01 14 45645258 45645258 C G FANCM Missense_Mutation p.Q1101E 0.41 tolerated(0.19) benign(0.006) TCGA-33-4566-01 14 47120699 47120699 C A RPL10L Missense_Mutation p.G81C 0.16 deleterious(0.02) probably_damaging(0.998) TCGA-33-4566-01 14 50909507 50909507 C T MAP4K5 Missense_Mutation p.D503N 0.30 tolerated(1) benign(0.012) TCGA-33-4566-01 14 51378992 51378992 C A PYGL Silent p.L550L 0.37 TCGA-33-4566-01 14 55004942 55004942 G T CGRRF1 Silent p.G280G 0.33 TCGA-33-4566-01 14 60193658 60193658 G T RTN1 Missense_Mutation p.L582M 0.19 tolerated(0.3) benign(0.235) TCGA-33-4566-01 14 62462806 62462806 G T SYT16 Silent p.R23R 0.30 TCGA-33-4566-01 14 63749907 63749907 C A RHOJ Nonsense_Mutation p.Y157* 0.41 TCGA-33-4566-01 14 68290268 68290268 G T RAD51B Missense_Mutation p.S3I 0.29 deleterious(0.01) benign(0.125) TCGA-33-4566-01 14 70634430 70634430 G A SLC8A3 Missense_Mutation p.T237I 0.41 deleterious(0) probably_damaging(1) TCGA-33-4566-01 14 70634971 70634971 C A SLC8A3 Missense_Mutation p.G57C 0.33 deleterious(0) probably_damaging(0.999) TCGA-33-4566-01 14 70713178 70713178 C A ADAM21P1 RNA 0.31 TCGA-33-4566-01 14 70925091 70925091 A T ADAM21 Missense_Mutation p.H292L 0.36 deleterious(0) possibly_damaging(0.905) TCGA-33-4566-01 14 71215569 71215569 C A MAP3K9 Missense_Mutation p.D435Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-33-4566-01 14 71479701 71479701 G T PCNX Splice_Site p.X927_splice 0.41 TCGA-33-4566-01 14 72138213 72138213 T C SIPA1L1 Missense_Mutation p.L878S 0.27 deleterious(0) probably_damaging(0.994) TCGA-33-4566-01 14 72205015 72205015 G A SIPA1L1 Silent p.L1748L 0.43 TCGA-33-4566-01 14 74180434 74180434 A T PNMA1 5'UTR 0.42 TCGA-33-4566-01 14 74443726 74443726 C G ENTPD5 Splice_Site p.X185_splice 0.35 TCGA-33-4566-01 14 75330491 75330491 G C PROX2 Missense_Mutation p.S16C 0.13 deleterious_low_confidence(0) benign(0.321) TCGA-33-4566-01 14 77732943 77732943 G T NGB Missense_Mutation p.A131D 0.15 tolerated(0.36) benign(0.016) TCGA-33-4566-01 14 79434664 79434664 C T NRXN3 Silent p.S666S 0.11 TCGA-33-4566-01 14 81956810 81956810 C G SEL1L Splice_Site p.X419_splice 0.20 TCGA-33-4566-01 14 88478168 88478168 C A GPR65 Missense_Mutation p.S326Y 0.22 deleterious(0) probably_damaging(0.969) TCGA-33-4566-01 14 88652436 88652436 T A KCNK10 Missense_Mutation p.T359S 0.18 tolerated(0.05) benign(0.035) TCGA-33-4566-01 14 88654339 88654339 C G KCNK10 Missense_Mutation p.R328P 0.31 deleterious(0) benign(0.215) TCGA-33-4566-01 14 92953010 92953010 G A SLC24A4 Missense_Mutation p.V475M 0.19 deleterious(0) probably_damaging(0.999) TCGA-33-4566-01 14 93686750 93686750 C G UBR7 Silent p.L372L 0.24 TCGA-33-4566-01 14 95033367 95033367 A G SERPINA4 Missense_Mutation p.E237G 0.39 tolerated(0.09) possibly_damaging(0.821) TCGA-33-4566-01 14 96777530 96777530 T C ATG2B Missense_Mutation p.Y1362C 0.41 deleterious(0) probably_damaging(0.995) TCGA-33-4566-01 15 100332063 100332063 G A AC090825.1 5'Flank 0.17 TCGA-33-4566-01 15 101554532 101554532 C T LRRK1 Silent p.F477F 0.40 TCGA-33-4566-01 15 102462434 102462434 G T OR4F4 Missense_Mutation p.P277T 0.31 deleterious(0) probably_damaging(0.998) TCGA-33-4566-01 15 20488860 20488860 G T CHEK2P2 RNA 0.21 TCGA-33-4566-01 15 22867508 22867508 G T TUBGCP5 Nonsense_Mutation p.E862* 0.50 TCGA-33-4566-01 15 23889233 23889233 C G MAGEL2 Silent p.A616A 0.12 TCGA-33-4566-01 15 25334980 25334980 G T SNORD116-23 5'Flank 0.29 TCGA-33-4566-01 15 25453293 25453293 A G SNORD115-21 RNA 0.16 TCGA-33-4566-01 15 25457009 25457009 G T SNORD115-23 RNA 0.45 TCGA-33-4566-01 15 25467533 25467533 T A SNORD115-28 RNA 0.16 TCGA-33-4566-01 15 26806217 26806217 G T GABRB3 Missense_Mutation p.F314L 0.41 deleterious(0.04) probably_damaging(0.999) TCGA-33-4566-01 15 27271968 27271968 G T GABRG3 Missense_Mutation p.M90I 0.11 deleterious(0.01) benign(0.002) TCGA-33-4566-01 15 28234752 28234752 C A OCA2 Missense_Mutation p.G393C 0.22 deleterious(0.04) probably_damaging(1) TCGA-33-4566-01 15 29092244 29092244 G T GOLGA6L7P RNA 0.41 TCGA-33-4566-01 15 31355396 31355396 G T TRPM1 Missense_Mutation p.P314H 0.21 deleterious(0) probably_damaging(0.999) TCGA-33-4566-01 15 33927967 33927967 C A RYR3 Missense_Mutation p.P1110T 0.29 probably_damaging(1) TCGA-33-4566-01 15 33927968 33927968 C A RYR3 Missense_Mutation p.P1110H 0.27 probably_damaging(1) TCGA-33-4566-01 15 33928020 33928020 G T RYR3 Missense_Mutation p.R1127S 0.25 benign(0.111) TCGA-33-4566-01 15 33952004 33952004 G A RYR3 Silent p.L1464L 0.29 TCGA-33-4566-01 15 34023743 34023743 C A RYR3 Silent p.L2424L 0.42 TCGA-33-4566-01 15 34080547 34080547 G T RYR3 Missense_Mutation p.G3240C 0.39 benign(0.005) TCGA-33-4566-01 15 34109111 34109111 A G RYR3 Missense_Mutation p.I3517M 0.50 benign(0.439) TCGA-33-4566-01 15 35082705 35082705 G T ACTC1 Missense_Mutation p.L348M 0.18 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-33-4566-01 15 38765759 38765759 G T FAM98B Silent p.L195L 0.40 TCGA-33-4566-01 15 40751488 40751488 G A BAHD1 Nonsense_Mutation p.W275* 0.09 TCGA-33-4566-01 15 43237376 43237376 C G UBR1 3'UTR 0.44 TCGA-33-4566-01 15 43568620 43568620 G T TGM7 3'UTR 0.17 TCGA-33-4566-01 15 44890865 44890865 C A SPG11 Nonsense_Mutation p.E1286* 0.41 TCGA-33-4566-01 15 45398789 45398789 T A DUOX2 Nonsense_Mutation p.K628* 0.23 TCGA-33-4566-01 15 45401780 45401780 C A DUOX2 Silent p.L392L 0.41 TCGA-33-4566-01 15 48056929 48056929 C A SEMA6D Missense_Mutation p.L398M 0.15 deleterious(0) probably_damaging(1) TCGA-33-4566-01 15 50581845 50581845 C A GABPB1 Missense_Mutation p.V252F 0.21 deleterious(0.01) probably_damaging(0.994) TCGA-33-4566-01 15 51503227 51503227 A C CYP19A1 Missense_Mutation p.F430L 0.28 deleterious(0) probably_damaging(1) TCGA-33-4566-01 15 51757049 51757049 C A DMXL2 Missense_Mutation p.G2544V 0.44 tolerated(0.48) possibly_damaging(0.844) TCGA-33-4566-01 15 54527271 54527271 C G UNC13C Missense_Mutation p.R1039G 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-33-4566-01 15 55970146 55970146 C T PRTG Silent p.L410L 0.46 TCGA-33-4566-01 15 63922665 63922665 C T HERC1 Silent p.Q4322Q 0.22 TCGA-33-4566-01 15 69011060 69011060 G T CORO2B Missense_Mutation p.D331Y 0.17 deleterious(0) probably_damaging(0.98) TCGA-33-4566-01 15 69018240 69018240 C G CORO2B Missense_Mutation p.A457G 0.29 tolerated(0.31) benign(0.002) TCGA-33-4566-01 15 71256238 71256238 G T LRRC49 Missense_Mutation p.M301I 0.35 tolerated(0.36) benign(0.014) TCGA-33-4566-01 15 72324912 72324912 C A MYO9A Missense_Mutation p.K286N 0.23 deleterious(0) probably_damaging(0.918) TCGA-33-4566-01 15 73585763 73585763 G - NEO1 Frame_Shift_Del p.D1259Ifs*101 0.34 TCGA-33-4566-01 15 74425228 74425228 G T ISLR2 Missense_Mutation p.V45L 0.20 deleterious(0.01) probably_damaging(0.97) TCGA-33-4566-01 15 74912388 74912388 G T CLK3 Missense_Mutation p.R212L 0.16 deleterious(0.04) benign(0.165) TCGA-33-4566-01 15 75499670 75499670 A T C15orf39 Silent p.S427S 0.25 TCGA-33-4566-01 15 75968836 75968836 G T CSPG4 Silent p.G2008G 0.45 TCGA-33-4566-01 15 75979665 75979665 G T CSPG4 Silent p.I1247I 0.19 TCGA-33-4566-01 15 75982632 75982632 G T CSPG4 Silent p.G258G 0.15 TCGA-33-4566-01 15 76566836 76566836 C T ETFA Splice_Site p.X245_splice 0.29 TCGA-33-4566-01 15 77907420 77907420 C G LINGO1 Missense_Mutation p.A277P 0.22 deleterious(0.01) benign(0.217) TCGA-33-4566-01 15 79277507 79277507 C A RASGRF1 Missense_Mutation p.D1102Y 0.44 deleterious(0) possibly_damaging(0.492) TCGA-33-4566-01 15 88476298 88476298 G C NTRK3 Missense_Mutation p.P612A 0.36 deleterious(0.02) probably_damaging(0.996) TCGA-33-4566-01 15 88669594 88669594 G T NTRK3 Missense_Mutation p.A435E 0.45 deleterious(0.01) probably_damaging(0.933) TCGA-33-4566-01 15 88679775 88679775 T A NTRK3 Missense_Mutation p.T230S 0.31 tolerated(0.57) benign(0.015) TCGA-33-4566-01 15 89198880 89198880 C T ISG20 3'UTR 0.24 TCGA-33-4566-01 15 90258209 90258209 A T WDR93 Splice_Site p.X214_splice 0.12 TCGA-33-4566-01 15 91185216 91185216 G A CRTC3 Silent p.L568L 0.36 TCGA-33-4566-01 15 92663793 92663793 G T SLCO3A1 Missense_Mutation p.A370S 0.18 deleterious(0.02) probably_damaging(0.992) TCGA-33-4566-01 15 93480847 93480847 C A CHD2 Silent p.V181V 0.15 TCGA-33-4566-01 15 94913349 94913349 G T MCTP2 Missense_Mutation p.V508F 0.41 deleterious(0) possibly_damaging(0.741) TCGA-33-4566-01 15 99926293 99926293 G C LRRC28 Missense_Mutation p.D364H 0.39 deleterious_low_confidence(0.05) benign(0.02) TCGA-33-4566-01 16 1400989 1400989 C T TSR3 Silent p.A115A 0.61 TCGA-33-4566-01 16 1537889 1537889 C A PTX4 Missense_Mutation p.R70L 0.12 deleterious(0.02) benign(0.187) TCGA-33-4566-01 16 24902286 24902286 G T SLC5A11 Missense_Mutation p.R254L 0.53 deleterious(0.01) probably_damaging(0.99) TCGA-33-4566-01 16 28507281 28507281 G A APOBR Missense_Mutation p.G307R 0.33 tolerated(0.61) benign(0.018) TCGA-33-4566-01 16 28507282 28507282 G T APOBR Missense_Mutation p.G307V 0.36 tolerated(0.33) benign(0.024) TCGA-33-4566-01 16 31405625 31405625 G T ITGAD Missense_Mutation p.G34C 0.18 deleterious(0) probably_damaging(0.962) TCGA-33-4566-01 16 4414342 4414342 C - CORO7 Frame_Shift_Del p.E404Sfs*11 0.59 TCGA-33-4566-01 16 4415025 4415025 G A CORO7 Nonsense_Mutation p.Q293* 0.43 TCGA-33-4566-01 16 4815616 4815616 C A ZNF500 Missense_Mutation p.V122L 0.62 deleterious(0.01) probably_damaging(0.991) TCGA-33-4566-01 16 49670164 49670164 G T ZNF423 Missense_Mutation p.R967S 0.55 tolerated(0.06) probably_damaging(0.961) TCGA-33-4566-01 16 50745311 50745311 C A NOD2 Missense_Mutation p.Q497K 0.48 tolerated(0.42) benign(0.004) TCGA-33-4566-01 16 51175911 51175911 T A SALL1 Silent p.V74V 0.63 TCGA-33-4566-01 16 54966530 54966530 G A IRX5 Missense_Mutation p.A124T 0.60 deleterious(0) possibly_damaging(0.891) TCGA-33-4566-01 16 55728016 55728017 - C SLC6A2 Frame_Shift_Ins p.C339Lfs*33 0.31 TCGA-33-4566-01 16 57608958 57608958 C A GPR114 Missense_Mutation p.F480L 0.49 tolerated(0.22) benign(0.107) TCGA-33-4566-01 16 58001179 58001179 C T CNGB1 Nonsense_Mutation p.W4* 0.38 TCGA-33-4566-01 16 58031855 58031855 C A ZNF319 Missense_Mutation p.Q105H 0.49 deleterious(0) probably_damaging(0.979) TCGA-33-4566-01 16 64982541 64982541 C A CDH11 Intron 0.37 TCGA-33-4566-01 16 66432414 66432414 T A CDH5 Missense_Mutation p.F514Y 0.45 deleterious(0) probably_damaging(0.99) TCGA-33-4566-01 16 67322176 67322176 G T PLEKHG4 Silent p.L1109L 0.56 TCGA-33-4566-01 16 70501323 70501323 A T FUK Silent p.P177P 0.56 TCGA-33-4566-01 16 705883 705883 G A WDR90 Missense_Mutation p.E654K 0.27 deleterious(0) probably_damaging(0.98) TCGA-33-4566-01 16 72188115 72188115 C T PMFBP1 Missense_Mutation p.D137N 0.57 deleterious(0.05) benign(0.125) TCGA-33-4566-01 16 74386055 74386055 C A RP11-252A24.2 RNA 0.38 TCGA-33-4566-01 16 76569445 76569445 G T CNTNAP4 Missense_Mutation p.G847V 0.51 deleterious(0) probably_damaging(0.987) TCGA-33-4566-01 16 77331277 77331277 G T ADAMTS18 Missense_Mutation p.Q904K 0.50 tolerated(0.29) benign(0.004) TCGA-33-4566-01 16 81078197 81078197 G A ATMIN Silent p.E698E 0.55 TCGA-33-4566-01 16 83999007 83999007 A G OSGIN1 Missense_Mutation p.R277G 0.64 tolerated(0.2) benign(0.42) TCGA-33-4566-01 16 84014711 84014711 G T NECAB2 Missense_Mutation p.K146N 0.56 deleterious(0) probably_damaging(0.959) TCGA-33-4566-01 16 84027924 84027924 C A NECAB2 Missense_Mutation p.P205H 0.38 deleterious(0) possibly_damaging(0.784) TCGA-33-4566-01 16 84228669 84228669 G C ADAD2 Intron 0.45 TCGA-33-4566-01 16 86602427 86602427 T C FOXC2 Missense_Mutation p.Y496H 0.46 deleterious(0) probably_damaging(0.998) TCGA-33-4566-01 17 10405209 10405209 T A MYH1 Missense_Mutation p.Q1044L 0.49 deleterious(0.04) probably_damaging(0.997) TCGA-33-4566-01 17 10417424 10417424 C T MYH1 Missense_Mutation p.G184E 0.49 deleterious(0) probably_damaging(0.995) TCGA-33-4566-01 17 10541398 10541398 C A MYH3 Missense_Mutation p.D1231Y 0.51 deleterious(0) possibly_damaging(0.889) TCGA-33-4566-01 17 11556254 11556254 G T DNAH9 Missense_Mutation p.D844Y 0.48 benign(0.01) TCGA-33-4566-01 17 11572399 11572399 C A DNAH9 Missense_Mutation p.T917N 0.56 benign(0.001) TCGA-33-4566-01 17 1382019 1382019 G A MYO1C Missense_Mutation p.P368L 0.55 deleterious(0) probably_damaging(0.962) TCGA-33-4566-01 17 16842928 16842928 G T TNFRSF13B Missense_Mutation p.P272Q 0.51 tolerated(0.05) benign(0.123) TCGA-33-4566-01 17 17697397 17697397 A T RAI1 Missense_Mutation p.T379S 0.58 tolerated(0.23) benign(0.075) TCGA-33-4566-01 17 17698714 17698714 G T RAI1 Missense_Mutation p.V818L 0.58 tolerated(0.14) benign(0.041) TCGA-33-4566-01 17 18541193 18541193 G T TBC1D28 Missense_Mutation p.Q161K 0.39 deleterious(0.02) benign(0.038) TCGA-33-4566-01 17 19091449 19091449 T A SNORD3A RNA 0.13 TCGA-33-4566-01 17 25967675 25967675 G T LGALS9 Missense_Mutation p.G70V 0.22 deleterious(0) probably_damaging(1) TCGA-33-4566-01 17 26695591 26695591 C T VTN Silent p.R310R 0.22 TCGA-33-4566-01 17 26920005 26920005 G A SPAG5 Missense_Mutation p.S86F 0.25 deleterious_low_confidence(0) possibly_damaging(0.555) TCGA-33-4566-01 17 26960074 26960074 C A KIAA0100 Missense_Mutation p.A1231S 0.22 tolerated(0.54) benign(0.057) TCGA-33-4566-01 17 27251019 27251019 C A PHF12 Missense_Mutation p.R208L 0.17 deleterious(0.01) possibly_damaging(0.762) TCGA-33-4566-01 17 27425375 27425375 C G MYO18A Missense_Mutation p.R1290P 0.31 deleterious(0) probably_damaging(0.986) TCGA-33-4566-01 17 28543169 28543169 G T SLC6A4 Silent p.T301T 0.31 TCGA-33-4566-01 17 28614917 28614917 T A BLMH Nonsense_Mutation p.R124* 0.42 TCGA-33-4566-01 17 28889927 28889927 C T TBC1D29 Silent p.A73A 0.18 TCGA-33-4566-01 17 29281555 29281555 C G ADAP2 Silent p.L288L 0.36 TCGA-33-4566-01 17 29685528 29685528 C A NF1 Silent p.T2667T 0.19 TCGA-33-4566-01 17 29685530 29685530 T A NF1 Missense_Mutation p.L2668Q 0.21 deleterious(0) possibly_damaging(0.642) TCGA-33-4566-01 17 30348860 30348860 T C LRRC37B Missense_Mutation p.L232P 0.25 tolerated(0.32) benign(0.012) TCGA-33-4566-01 17 30632392 30632392 G T RHBDL3 Missense_Mutation p.A272S 0.19 deleterious(0) possibly_damaging(0.834) TCGA-33-4566-01 17 30815061 30815061 G T CDK5R1 Silent p.R141R 0.24 TCGA-33-4566-01 17 3119405 3119405 C A OR1A1 Missense_Mutation p.A164D 0.61 deleterious(0) possibly_damaging(0.864) TCGA-33-4566-01 17 32953342 32953342 G T TMEM132E Silent p.P88P 0.28 TCGA-33-4566-01 17 33679275 33679275 C G SLFN11 3'UTR 0.19 TCGA-33-4566-01 17 34311434 34311434 G C CCL14 Missense_Mutation p.P61R 0.26 tolerated(0.09) benign(0.433) TCGA-33-4566-01 17 34858937 34858937 C T MYO19 Missense_Mutation p.E694K 0.29 tolerated(0.21) benign(0.004) TCGA-33-4566-01 17 34951410 34951410 G T DHRS11 Missense_Mutation p.A53S 0.24 tolerated(0.57) benign(0.048) TCGA-33-4566-01 17 34964213 34964213 G T MRM1 Missense_Mutation p.W248C 0.29 deleterious(0.01) benign(0.225) TCGA-33-4566-01 17 36453216 36453216 G T MRPL45 Splice_Site p.X22_splice 0.24 TCGA-33-4566-01 17 37187556 37187556 C G CTD-2206N4.2 5'Flank 0.19 TCGA-33-4566-01 17 37369250 37369250 G T STAC2 Missense_Mutation p.Q377K 0.28 deleterious(0) probably_damaging(0.993) TCGA-33-4566-01 17 37687206 37687206 G T CDK12 Silent p.L1370L 0.25 TCGA-33-4566-01 17 37762558 37762558 C A NEUROD2 Nonsense_Mutation p.E99* 0.25 TCGA-33-4566-01 17 38975445 38975445 C G TMEM99 5'UTR 0.24 TCGA-33-4566-01 17 39296319 39296319 G T KRTAP4-6 Missense_Mutation p.R141S 0.18 deleterious(0.02) unknown(0) TCGA-33-4566-01 17 39394593 39394593 C A KRTAP9-8 Missense_Mutation p.A97E 0.31 tolerated(1) probably_damaging(0.963) TCGA-33-4566-01 17 39643257 39643257 G T KRT36 Silent p.R385R 0.21 TCGA-33-4566-01 17 39888337 39888337 C T HAP1 Missense_Mutation p.D250N 0.32 deleterious(0.02) possibly_damaging(0.728) TCGA-33-4566-01 17 40997010 40997010 A G AOC2 Missense_Mutation p.I123V 0.14 tolerated(1) benign(0.01) TCGA-33-4566-01 17 41006721 41006721 C A AOC3 Missense_Mutation p.S619R 0.12 deleterious(0.01) probably_damaging(0.994) TCGA-33-4566-01 17 41931263 41931263 C A CD300LG Nonsense_Mutation p.Y190* 0.21 TCGA-33-4566-01 17 42328875 42328875 G A SLC4A1 Missense_Mutation p.T798M 0.21 tolerated(0.1) probably_damaging(0.999) TCGA-33-4566-01 17 43138679 43138679 C A NMT1 5'UTR 0.12 TCGA-33-4566-01 17 45369703 45369703 C T ITGB3 Missense_Mutation p.R487C 0.28 deleterious(0.05) benign(0.21) TCGA-33-4566-01 17 4644069 4644069 G T ZMYND15 Nonsense_Mutation p.E76* 0.58 TCGA-33-4566-01 17 47484217 47484217 C G PHB Splice_Site p.X171_splice 0.33 TCGA-33-4566-01 17 51900394 51900394 C G KIF2B 5'UTR 0.18 TCGA-33-4566-01 17 56270165 56270165 T C EPX 5'UTR 0.43 TCGA-33-4566-01 17 56276470 56276470 G T EPX Missense_Mutation p.R397L 0.20 deleterious(0) possibly_damaging(0.647) TCGA-33-4566-01 17 57094780 57094780 T C TRIM37 Missense_Mutation p.N755D 0.21 tolerated_low_confidence(0.16) benign(0.046) TCGA-33-4566-01 17 58556611 58556611 C G APPBP2 Missense_Mutation p.G134A 0.24 tolerated(0.06) probably_damaging(0.998) TCGA-33-4566-01 17 58711239 58711239 C T PPM1D Missense_Mutation p.R243C 0.21 deleterious(0) probably_damaging(1) TCGA-33-4566-01 17 6021442 6021442 G T WSCD1 Missense_Mutation p.A437S 0.58 deleterious(0.02) probably_damaging(0.995) TCGA-33-4566-01 17 60483852 60483852 G A EFCAB3 Missense_Mutation p.R219K 0.24 tolerated(0.46) benign(0.012) TCGA-33-4566-01 17 60778954 60778954 C A MARCH10 3'UTR 0.34 TCGA-33-4566-01 17 61611394 61611394 C A KCNH6 Missense_Mutation p.P275T 0.29 deleterious(0.01) benign(0.228) TCGA-33-4566-01 17 61611395 61611395 C A KCNH6 Missense_Mutation p.P275H 0.30 deleterious(0) probably_damaging(0.987) TCGA-33-4566-01 17 61950631 61950631 C A CSH2 Missense_Mutation p.V27F 0.15 tolerated(1) benign(0.012) TCGA-33-4566-01 17 61958388 61958388 C A GH2 Splice_Site p.X97_splice 0.23 TCGA-33-4566-01 17 62050198 62050198 C G SCN4A Missense_Mutation p.A2P 0.29 deleterious_low_confidence(0.04) benign(0.007) TCGA-33-4566-01 17 62050199 62050199 C A SCN4A Translation_Start_Site p.M1? 0.29 deleterious_low_confidence(0) possibly_damaging(0.577) TCGA-33-4566-01 17 6373627 6373627 C G PITPNM3 Missense_Mutation p.A576P 0.60 deleterious(0) probably_damaging(0.999) TCGA-33-4566-01 17 66913532 66913532 T A ABCA8 Missense_Mutation p.K663M 0.25 deleterious(0) possibly_damaging(0.882) TCGA-33-4566-01 17 66982353 66982353 G T ABCA9 Missense_Mutation p.A1387D 0.29 deleterious(0) probably_damaging(0.989) TCGA-33-4566-01 17 66982354 66982354 C T ABCA9 Missense_Mutation p.A1387T 0.30 tolerated(0.06) possibly_damaging(0.811) TCGA-33-4566-01 17 67012471 67012471 C G ABCA9 Missense_Mutation p.D988H 0.23 deleterious(0.01) benign(0.224) TCGA-33-4566-01 17 67013838 67013838 G T ABCA9 Missense_Mutation p.P954T 0.26 tolerated(0.51) benign(0.057) TCGA-33-4566-01 17 68171898 68171898 G A KCNJ2 Missense_Mutation p.G240R 0.28 deleterious(0) probably_damaging(0.998) TCGA-33-4566-01 17 73949611 73949611 C A ACOX1 Missense_Mutation p.A289S 0.17 tolerated(0.51) benign(0.004) TCGA-33-4566-01 17 7578440 7578440 T C TP53 Missense_Mutation p.K164E 0.50 deleterious(0) probably_damaging(0.999) TCGA-33-4566-01 17 7640532 7640532 C - DNAH2 Frame_Shift_Del p.H377Tfs*8 0.41 TCGA-33-4566-01 17 77043891 77043891 G T C1QTNF1 Silent p.V189V 0.24 TCGA-33-4566-01 17 78318559 78318559 G C RNF213 Missense_Mutation p.E2142Q 0.31 possibly_damaging(0.776) TCGA-33-4566-01 17 78321522 78321522 G A RNF213 Silent p.V3129V 0.30 TCGA-33-4566-01 17 7909797 7909797 C G GUCY2D Missense_Mutation p.H381Q 0.45 tolerated(0.06) benign(0.024) TCGA-33-4566-01 17 79250894 79250894 T A SLC38A10 Silent p.S222S 0.29 TCGA-33-4566-01 17 79671382 79671382 C T SLC25A10 Silent p.P61P 0.15 TCGA-33-4566-01 17 7979605 7979605 G T ALOX12B Missense_Mutation p.L474I 0.44 tolerated(0.12) benign(0.006) TCGA-33-4566-01 17 79911102 79911102 C T NOTUM Missense_Mutation p.R409Q 0.19 tolerated(0.37) probably_damaging(0.984) TCGA-33-4566-01 17 80040803 80040803 G A FASN Silent p.S1918S 0.20 TCGA-33-4566-01 17 80136436 80136436 C A CCDC57 Nonsense_Mutation p.E474* 0.31 TCGA-33-4566-01 17 80136437 80136437 C A CCDC57 Missense_Mutation p.Q473H 0.28 deleterious(0.04) probably_damaging(0.919) TCGA-33-4566-01 17 80963008 80963008 C A B3GNTL1 Nonsense_Mutation p.E163* 0.26 TCGA-33-4566-01 18 10696074 10696074 C T PIEZO2 Silent p.E2283E 0.41 TCGA-33-4566-01 18 12358935 12358935 G A AFG3L2 Silent p.L254L 0.16 TCGA-33-4566-01 18 14524910 14524910 G T POTEC Splice_Site p.X399_splice 0.42 TCGA-33-4566-01 18 14542973 14542973 C G POTEC Missense_Mutation p.R58T 0.34 deleterious_low_confidence(0) benign(0.227) TCGA-33-4566-01 18 14752917 14752917 G A ANKRD30B Missense_Mutation p.G139D 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-33-4566-01 18 14763841 14763841 G T ANKRD30B Missense_Mutation p.G326V 0.22 tolerated(0.23) benign(0.429) TCGA-33-4566-01 18 14782614 14782614 G A ANKRD30B Splice_Site p.X524_splice 0.43 TCGA-33-4566-01 18 14808578 14808578 G T ANKRD30B Missense_Mutation p.K771N 0.16 deleterious(0) probably_damaging(0.978) TCGA-33-4566-01 18 19116018 19116018 C T ESCO1 Silent p.A724A 0.26 TCGA-33-4566-01 18 21437827 21437827 G T LAMA3 Missense_Mutation p.G1386W 0.10 probably_damaging(1) TCGA-33-4566-01 18 21892062 21892062 C A OSBPL1A Silent p.L326L 0.49 TCGA-33-4566-01 18 22057556 22057556 G C HRH4 3'UTR 0.59 TCGA-33-4566-01 18 25589781 25589781 C A CDH2 Missense_Mutation p.G201V 0.26 deleterious(0) probably_damaging(1) TCGA-33-4566-01 18 31314344 31314344 G T ASXL3 Missense_Mutation p.W349C 0.39 probably_damaging(1) TCGA-33-4566-01 18 334952 334952 C A COLEC12 Nonsense_Mutation p.G536* 0.40 TCGA-33-4566-01 18 42533143 42533143 G T SETBP1 Missense_Mutation p.V1280L 0.24 tolerated(1) benign(0.043) TCGA-33-4566-01 18 58039646 58039646 C A MC4R 5'UTR 0.42 TCGA-33-4566-01 18 60527717 60527717 A T PHLPP1 Missense_Mutation p.E650V 0.33 deleterious(0.03) probably_damaging(0.937) TCGA-33-4566-01 18 61231353 61231353 G T SERPINB12 Silent p.A215A 0.26 TCGA-33-4566-01 18 63489423 63489423 A T CDH7 Silent p.G244G 0.29 TCGA-33-4566-01 18 70209051 70209051 G A CBLN2 Silent p.I115I 0.20 TCGA-33-4566-01 18 70532460 70532460 G T NETO1 Silent p.I15I 0.26 TCGA-33-4566-01 18 77170980 77170980 G T NFATC1 Silent p.R222R 0.17 TCGA-33-4566-01 18 9517070 9517070 G C RALBP1 Missense_Mutation p.D158H 0.69 tolerated(0.11) possibly_damaging(0.761) TCGA-33-4566-01 19 10335161 10335161 C A S1PR2 Missense_Mutation p.G141C 0.57 deleterious(0.03) probably_damaging(0.957) TCGA-33-4566-01 19 10445845 10445845 G T ICAM3 Silent p.A278A 0.52 TCGA-33-4566-01 19 11280498 11280498 C A KANK2 Intron 0.57 TCGA-33-4566-01 19 11978459 11978459 G A ZNF439 Missense_Mutation p.G192E 0.52 deleterious(0.03) probably_damaging(0.913) TCGA-33-4566-01 19 12061333 12061333 G T ZNF700 3'UTR 0.59 TCGA-33-4566-01 19 12848436 12848436 G T ASNA1 Missense_Mutation p.W39C 0.43 deleterious(0) probably_damaging(1) TCGA-33-4566-01 19 14574703 14574703 G T PKN1 Missense_Mutation p.R526L 0.44 tolerated(0.05) possibly_damaging(0.56) TCGA-33-4566-01 19 14876506 14876506 C A EMR2 Nonsense_Mutation p.G249* 0.22 TCGA-33-4566-01 19 15997053 15997053 C T CYP4F2 Silent p.E328E 0.50 TCGA-33-4566-01 19 16060490 16060490 G C OR10H4 Missense_Mutation p.A225P 0.52 deleterious(0) benign(0.169) TCGA-33-4566-01 19 17370465 17370465 G C USHBP1 Missense_Mutation p.P282R 0.61 tolerated(0.35) benign(0.01) TCGA-33-4566-01 19 17438608 17438608 G T ANO8 Missense_Mutation p.L770M 0.51 tolerated(0.72) possibly_damaging(0.472) TCGA-33-4566-01 19 1783259 1783259 A T ATP8B3 Missense_Mutation p.V1224E 0.60 tolerated(0.32) benign(0.001) TCGA-33-4566-01 19 18474268 18474268 G T PGPEP1 Missense_Mutation p.V169L 0.47 deleterious(0) probably_damaging(0.973) TCGA-33-4566-01 19 19613322 19613322 G T GATAD2A Silent p.T586T 0.48 TCGA-33-4566-01 19 19758456 19758456 C A ATP13A1 Missense_Mutation p.K915N 0.47 tolerated(0.33) benign(0.002) TCGA-33-4566-01 19 20236179 20236179 A T CTC-260E6.2 RNA 0.33 TCGA-33-4566-01 19 22154164 22154164 G T ZNF208 Silent p.P1224P 0.40 TCGA-33-4566-01 19 22363556 22363556 G T ZNF676 Silent p.S321S 0.26 TCGA-33-4566-01 19 22375821 22375821 G T ZNF676 Missense_Mutation p.P43T 0.47 deleterious(0.05) probably_damaging(0.981) TCGA-33-4566-01 19 23159425 23159425 A T ZNF728 Missense_Mutation p.S238R 0.50 tolerated(0.09) benign(0.139) TCGA-33-4566-01 19 2413830 2413830 G A TMPRSS9 Missense_Mutation p.D429N 0.49 tolerated(0.29) benign(0.029) TCGA-33-4566-01 19 2834576 2834576 G T ZNF554 Missense_Mutation p.R448L 0.62 tolerated(0.09) possibly_damaging(0.821) TCGA-33-4566-01 19 2877357 2877357 G A ZNF556 Missense_Mutation p.R134H 0.58 tolerated(0.13) possibly_damaging(0.608) TCGA-33-4566-01 19 30505793 30505793 G T URI1 Splice_Site p.X476_splice 0.30 TCGA-33-4566-01 19 30936088 30936088 A T ZNF536 Missense_Mutation p.K540I 0.33 deleterious(0) probably_damaging(0.997) TCGA-33-4566-01 19 32955672 32955672 G T DPY19L3 Silent p.L532L 0.34 TCGA-33-4566-01 19 33167781 33167781 G T RGS9BP Silent p.G204G 0.54 TCGA-33-4566-01 19 33623155 33623155 A T WDR88 Missense_Mutation p.E27V 0.25 tolerated_low_confidence(0.18) benign(0.001) TCGA-33-4566-01 19 35617781 35617781 A T LGI4 Missense_Mutation p.F257I 0.29 deleterious(0.01) probably_damaging(0.91) TCGA-33-4566-01 19 35832486 35832487 AG T CD22 Frame_Shift_Del p.K583Mfs*18 0.25 TCGA-33-4566-01 19 35835768 35835768 G A CD22 Missense_Mutation p.G691E 0.20 deleterious(0) probably_damaging(0.973) TCGA-33-4566-01 19 36113796 36113796 G T HAUS5 Missense_Mutation p.Q601H 0.42 deleterious(0) possibly_damaging(0.86) TCGA-33-4566-01 19 36214714 36214714 G A KMT2B Missense_Mutation p.R1047Q 0.24 possibly_damaging(0.885) TCGA-33-4566-01 19 36352130 36352130 C A KIRREL2 Missense_Mutation p.A388D 0.60 tolerated(0.09) benign(0.049) TCGA-33-4566-01 19 36505092 36505092 C T ALKBH6 Missense_Mutation p.G15E 0.26 deleterious_low_confidence(0.03) possibly_damaging(0.463) TCGA-33-4566-01 19 37488271 37488271 G C ZNF568 Missense_Mutation p.E496Q 0.27 deleterious(0.01) possibly_damaging(0.775) TCGA-33-4566-01 19 37579991 37579991 G T ZNF420 5'UTR 0.34 TCGA-33-4566-01 19 37676857 37676857 C A ZNF585B Nonsense_Mutation p.G528* 0.24 TCGA-33-4566-01 19 38160624 38160624 T C ZNF781 Silent p.R142R 0.58 TCGA-33-4566-01 19 38161015 38161015 G T ZNF781 Missense_Mutation p.A12E 0.57 deleterious_low_confidence(0) possibly_damaging(0.587) TCGA-33-4566-01 19 38991614 38991614 C A RYR1 Missense_Mutation p.A2533D 0.51 benign(0.001) TCGA-33-4566-01 19 39362466 39362466 G A RINL Missense_Mutation p.H120Y 0.57 deleterious(0.02) possibly_damaging(0.826) TCGA-33-4566-01 19 41930389 41930389 C A BCKDHA Missense_Mutation p.P405H 0.24 deleterious(0.01) possibly_damaging(0.462) TCGA-33-4566-01 19 42396400 42396400 A C ARHGEF1 Splice_Site p.X124_splice 0.15 TCGA-33-4566-01 19 425194 425194 C A SHC2 Silent p.R404R 0.66 TCGA-33-4566-01 19 42600276 42600276 G T POU2F2 Silent p.A207A 0.41 TCGA-33-4566-01 19 4298101 4298101 G T TMIGD2 Silent p.T96T 0.49 TCGA-33-4566-01 19 43414914 43414914 G T PSG6 Missense_Mutation p.A175E 0.22 deleterious(0.01) possibly_damaging(0.678) TCGA-33-4566-01 19 43433662 43433662 G T PSG7 Missense_Mutation p.P214H 0.19 deleterious(0.04) probably_damaging(0.987) TCGA-33-4566-01 19 43575854 43575854 G A PSG2 Missense_Mutation p.S321F 0.18 tolerated(0.05) benign(0.192) TCGA-33-4566-01 19 43757755 43757755 T C PSG9 3'UTR 0.65 TCGA-33-4566-01 19 44065074 44065074 C G XRCC1 Missense_Mutation p.E81D 0.39 tolerated(0.52) benign(0.003) TCGA-33-4566-01 19 44352080 44352080 G T ZNF283 Missense_Mutation p.G443C 0.15 deleterious(0.03) probably_damaging(1) TCGA-33-4566-01 19 44732500 44732500 A T ZNF227 Intron 0.41 TCGA-33-4566-01 19 45822880 45822880 G A CKM Missense_Mutation p.A31V 0.20 deleterious(0) probably_damaging(0.962) TCGA-33-4566-01 19 46094288 46094288 A G GPR4 Silent p.C279C 0.38 TCGA-33-4566-01 19 46328429 46328429 C A SYMPK Silent p.P830P 0.49 TCGA-33-4566-01 19 46332347 46332347 C A SYMPK Missense_Mutation p.W622C 0.43 deleterious(0.02) benign(0.289) TCGA-33-4566-01 19 46663911 46663911 C A IGFL2 Silent p.P49P 0.16 TCGA-33-4566-01 19 46914865 46914865 T C CCDC8 Silent p.S401S 0.20 TCGA-33-4566-01 19 47858496 47858496 G T DHX34 Silent p.R302R 0.44 TCGA-33-4566-01 19 48547117 48547117 C A CABP5 Silent p.R21R 0.46 TCGA-33-4566-01 19 49622256 49622256 T A C19orf73 Missense_Mutation p.Q8H 0.35 tolerated_low_confidence(0.46) benign(0.387) TCGA-33-4566-01 19 50209485 50209485 C T CPT1C Intron 0.22 TCGA-33-4566-01 19 50266502 50266502 C A TSKS Translation_Start_Site p.M1? 0.24 deleterious(0) probably_damaging(0.974) TCGA-33-4566-01 19 50964956 50964956 C A MYBPC2 Missense_Mutation p.T1030K 0.08 tolerated(0.68) benign(0.008) TCGA-33-4566-01 19 51361523 51361523 G T KLK3 Missense_Mutation p.G149W 0.39 deleterious(0) probably_damaging(0.963) TCGA-33-4566-01 19 51770668 51770668 C T SIGLECL1 Missense_Mutation p.A151V 0.15 tolerated(0.35) benign(0.011) TCGA-33-4566-01 19 51883415 51883415 C T LIM2 3'UTR 0.54 TCGA-33-4566-01 19 52003232 52003232 C A SIGLEC12 Silent p.V250V 0.25 TCGA-33-4566-01 19 52004701 52004701 A G SIGLEC12 Missense_Mutation p.L96P 0.29 deleterious(0.02) probably_damaging(0.938) TCGA-33-4566-01 19 52132608 52132608 C G SIGLEC5 Intron 0.33 TCGA-33-4566-01 19 52148737 52148737 T A SIGLEC14 Silent p.T249T 0.13 TCGA-33-4566-01 19 52272532 52272532 C A FPR2 Silent p.V207V 0.16 TCGA-33-4566-01 19 52570198 52570198 T C ZNF841 Missense_Mutation p.R313G 0.28 tolerated(1) benign(0) TCGA-33-4566-01 19 52938435 52938435 A T ZNF534 Missense_Mutation p.R95W 0.37 tolerated(0.25) possibly_damaging(0.619) TCGA-33-4566-01 19 53086575 53086575 C A ZNF701 Missense_Mutation p.H487Q 0.16 tolerated(1) benign(0.001) TCGA-33-4566-01 19 53269553 53269553 C A ZNF600 Missense_Mutation p.A486S 0.36 tolerated(0.23) benign(0.085) TCGA-33-4566-01 19 53385191 53385191 T G ZNF320 Missense_Mutation p.Q63P 0.39 tolerated(0.05) benign(0.36) TCGA-33-4566-01 19 53572005 53572005 C A ZNF160 Missense_Mutation p.K594N 0.37 deleterious(0) benign(0.158) TCGA-33-4566-01 19 53643511 53643511 T C ZNF347 3'UTR 0.24 TCGA-33-4566-01 19 53792943 53792943 A T BIRC8 Missense_Mutation p.F229I 0.43 tolerated(0.41) benign(0.096) TCGA-33-4566-01 19 53793364 53793364 C T BIRC8 Silent p.E88E 0.40 TCGA-33-4566-01 19 53912734 53912734 G T ZNF765 3'UTR 0.36 TCGA-33-4566-01 19 53958872 53958872 T A ZNF761 RNA 0.16 TCGA-33-4566-01 19 53995065 53995065 G T ZNF813 Nonsense_Mutation p.E527* 0.32 TCGA-33-4566-01 19 53995209 53995209 G T ZNF813 Nonsense_Mutation p.G575* 0.32 TCGA-33-4566-01 19 54301541 54301541 C G NLRP12 Silent p.L961L 0.44 TCGA-33-4566-01 19 54307228 54307228 C T NLRP12 Missense_Mutation p.V855I 0.33 tolerated(0.2) benign(0.008) TCGA-33-4566-01 19 54313686 54313686 C A NLRP12 Silent p.V409V 0.20 TCGA-33-4566-01 19 54377184 54377184 G A MYADM Missense_Mutation p.R134Q 0.23 tolerated(0.23) possibly_damaging(0.49) TCGA-33-4566-01 19 54418756 54418756 T A CACNG7 Missense_Mutation p.S141T 0.31 deleterious(0) possibly_damaging(0.62) TCGA-33-4566-01 19 54695431 54695431 G A TSEN34 Silent p.P72P 0.25 TCGA-33-4566-01 19 54744935 54744935 G T LILRA6 Missense_Mutation p.L243I 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-33-4566-01 19 54823819 54823819 G T LILRA5 Missense_Mutation p.L26M 0.37 deleterious(0) probably_damaging(0.994) TCGA-33-4566-01 19 54848414 54848414 C A LILRA4 Missense_Mutation p.G318V 0.33 deleterious(0.01) probably_damaging(0.918) TCGA-33-4566-01 19 55179429 55179429 C A LILRB4 Missense_Mutation p.P436T 0.32 tolerated(0.05) benign(0.007) TCGA-33-4566-01 19 55281271 55281271 G T KIR2DL1 5'UTR 0.17 TCGA-33-4566-01 19 55315366 55315366 G T KIR2DL4 Missense_Mutation p.V21L 0.41 tolerated(0.25) benign(0.043) TCGA-33-4566-01 19 56047494 56047494 G T SBK2 Silent p.A56A 0.16 TCGA-33-4566-01 19 56443408 56443408 C A NLRP13 Missense_Mutation p.Q90H 0.17 tolerated(0.15) benign(0.002) TCGA-33-4566-01 19 56466446 56466446 C A NLRP8 Missense_Mutation p.T341K 0.46 tolerated(1) benign(0.021) TCGA-33-4566-01 19 56487655 56487655 A G NLRP8 Silent p.T954T 0.46 TCGA-33-4566-01 19 57086048 57086048 C A ZNF470 Missense_Mutation p.Q77K 0.22 deleterious(0.03) probably_damaging(0.93) TCGA-33-4566-01 19 57175464 57175464 C G ZNF835 Missense_Mutation p.G368A 0.16 deleterious(0.02) probably_damaging(0.996) TCGA-33-4566-01 19 57642468 57642468 G T USP29 Nonsense_Mutation p.E809* 0.41 TCGA-33-4566-01 19 57646928 57646928 G T ZIM3 Silent p.A259A 0.30 TCGA-33-4566-01 19 57868780 57868780 A T ZNF304 Missense_Mutation p.S515C 0.23 deleterious(0.04) probably_damaging(0.994) TCGA-33-4566-01 19 58003603 58003603 G T ZNF419 Intron 0.42 TCGA-33-4566-01 19 58420355 58420355 T C ZNF417 Missense_Mutation p.T431A 0.42 deleterious(0.01) possibly_damaging(0.804) TCGA-33-4566-01 19 58549597 58549597 C A ZSCAN1 Intron 0.50 TCGA-33-4566-01 19 58565188 58565188 C G ZSCAN1 Missense_Mutation p.N332K 0.39 deleterious(0.02) benign(0) TCGA-33-4566-01 19 58578318 58578318 G C ZNF135 Missense_Mutation p.V180L 0.35 tolerated(0.25) benign(0.008) TCGA-33-4566-01 19 58639119 58639119 C T ZNF329 3'UTR 0.29 TCGA-33-4566-01 19 58639368 58639368 A C ZNF329 Missense_Mutation p.H501Q 0.21 deleterious(0) probably_damaging(0.996) TCGA-33-4566-01 19 6853990 6853990 G A VAV1 Missense_Mutation p.A789T 0.52 deleterious(0) possibly_damaging(0.835) TCGA-33-4566-01 19 746411 746411 C A PALM Missense_Mutation p.A254E 0.14 tolerated(0.21) benign(0.072) TCGA-33-4566-01 19 7762180 7762180 C A FCER2 Silent p.T86T 0.56 TCGA-33-4566-01 19 9012814 9012814 G T MUC16 Missense_Mutation p.S12877Y 0.55 probably_damaging(0.999) TCGA-33-4566-01 19 9045689 9045689 G T MUC16 Missense_Mutation p.T11981K 0.49 benign(0.402) TCGA-33-4566-01 19 9046271 9046271 G T MUC16 Missense_Mutation p.P11787H 0.53 possibly_damaging(0.843) TCGA-33-4566-01 19 9046272 9046272 G T MUC16 Missense_Mutation p.P11787T 0.55 benign(0.048) TCGA-33-4566-01 19 9072189 9072189 C A MUC16 Missense_Mutation p.R5086L 0.48 unknown(0) TCGA-33-4566-01 19 9072904 9072904 C G MUC16 Missense_Mutation p.V4848L 0.48 unknown(0) TCGA-33-4566-01 19 9076689 9076689 G T MUC16 Missense_Mutation p.T3586K 0.59 unknown(0) TCGA-33-4566-01 19 9087693 9087693 G T MUC16 Silent p.P1374P 0.44 TCGA-33-4566-01 19 9088753 9088756 ATGG TTT MUC16 Frame_Shift_Del p.T1020Kfs*94 0.42 TCGA-33-4566-01 19 9324727 9324727 C A OR7D4 Missense_Mutation p.A263S 0.62 tolerated(0.1) benign(0.07) TCGA-33-4566-01 19 9873983 9873983 C G ZNF846 Missense_Mutation p.E39D 0.61 deleterious(0.01) probably_damaging(0.999) TCGA-33-4566-01 1 100950120 100950120 G T CDC14A Intron 0.23 TCGA-33-4566-01 1 101190441 101190441 T C VCAM1 Missense_Mutation p.V308A 0.30 deleterious(0) probably_damaging(0.979) TCGA-33-4566-01 1 103347304 103347304 C G COL11A1 Missense_Mutation p.W1663C 0.18 unknown(0) TCGA-33-4566-01 1 103381204 103381204 C A COL11A1 Missense_Mutation p.G1267W 0.25 unknown(0) TCGA-33-4566-01 1 103428316 103428316 C A COL11A1 Nonsense_Mutation p.G973* 0.24 TCGA-33-4566-01 1 103444657 103444657 C A COL11A1 Missense_Mutation p.V872L 0.21 unknown(0) TCGA-33-4566-01 1 103444981 103444981 C A COL11A1 Missense_Mutation p.G856V 0.21 unknown(0) TCGA-33-4566-01 1 109824326 109824326 G A PSRC1 Missense_Mutation p.T145M 0.04 deleterious(0.02) benign(0.282) TCGA-33-4566-01 1 109856652 109856652 C G SORT1 3'UTR 0.11 TCGA-33-4566-01 1 110087015 110087015 C A GPR61 3'UTR 0.24 TCGA-33-4566-01 1 110255680 110255680 G T GSTM5 Intron 0.24 TCGA-33-4566-01 1 111147092 111147092 G T KCNA2 Missense_Mutation p.P105T 0.30 deleterious(0.02) benign(0.001) TCGA-33-4566-01 1 111441877 111441877 T C CD53 3'UTR 0.14 TCGA-33-4566-01 1 113197267 113197267 G A CAPZA1 Missense_Mutation p.D134N 0.24 tolerated(0.45) benign(0.004) TCGA-33-4566-01 1 115220052 115220052 C A AMPD1 Missense_Mutation p.W469C 0.22 deleterious(0) probably_damaging(1) TCGA-33-4566-01 1 11721303 11721303 C T FBXO44 Silent p.S247S 0.29 TCGA-33-4566-01 1 118623765 118623765 T A SPAG17 Missense_Mutation p.Q723L 0.26 tolerated(0.2) benign(0.302) TCGA-33-4566-01 1 119427626 119427626 T C TBX15 Missense_Mutation p.N407S 0.26 tolerated(0.94) probably_damaging(0.97) TCGA-33-4566-01 1 11983154 11983154 C A KIAA2013 Missense_Mutation p.V476L 0.23 tolerated(0.17) probably_damaging(0.996) TCGA-33-4566-01 1 119965138 119965138 G T HSD3B2 Silent p.A338A 0.25 TCGA-33-4566-01 1 1273368 1273368 T A DVL1 Missense_Mutation p.Q543L 0.30 tolerated(0.08) unknown(0) TCGA-33-4566-01 1 12854133 12854133 C A PRAMEF1 Silent p.A119A 0.18 TCGA-33-4566-01 1 12979866 12979866 T C PRAMEF7 Missense_Mutation p.L353P 0.12 probably_damaging(1) TCGA-33-4566-01 1 1391224 1391224 G T ATAD3C Missense_Mutation p.K164N 0.26 deleterious(0) possibly_damaging(0.873) TCGA-33-4566-01 1 143767487 143767487 C T PPIAL4G Nonsense_Mutation p.W121* 0.12 TCGA-33-4566-01 1 144871797 144871797 C A PDE4DIP Missense_Mutation p.S1722I 0.33 tolerated(0.44) possibly_damaging(0.713) TCGA-33-4566-01 1 145281564 145281564 C T NOTCH2NL Missense_Mutation p.S165F 0.09 deleterious(0) probably_damaging(0.999) TCGA-33-4566-01 1 149871789 149871789 G C BOLA1 Silent p.A59A 0.26 TCGA-33-4566-01 1 149915643 149915643 C A OTUD7B 3'UTR 0.39 TCGA-33-4566-01 1 149943093 149943093 C G OTUD7B Missense_Mutation p.E58Q 0.41 deleterious(0.02) possibly_damaging(0.541) TCGA-33-4566-01 1 150325549 150325549 G T PRPF3 3'UTR 0.39 TCGA-33-4566-01 1 150958880 150958880 G T ANXA9 Missense_Mutation p.A181S 0.34 tolerated(0.11) benign(0.442) TCGA-33-4566-01 1 151070370 151070370 A T GABPB2 Missense_Mutation p.N172Y 0.33 deleterious(0.01) benign(0.27) TCGA-33-4566-01 1 152057894 152057894 G T TCHHL1 Missense_Mutation p.A755E 0.31 tolerated(0.08) benign(0.224) TCGA-33-4566-01 1 152058212 152058212 G T TCHHL1 Missense_Mutation p.P649H 0.35 deleterious(0.01) probably_damaging(0.947) TCGA-33-4566-01 1 152083673 152083673 G C TCHH Missense_Mutation p.R674G 0.37 unknown(0) TCGA-33-4566-01 1 152193146 152193146 G T HRNR Missense_Mutation p.S320Y 0.39 unknown(0) TCGA-33-4566-01 1 152286978 152286978 C T FLG Silent p.L128L 0.24 TCGA-33-4566-01 1 152382453 152382453 C A CRNN Nonsense_Mutation p.G369* 0.32 TCGA-33-4566-01 1 152732350 152732350 G T KPRP Missense_Mutation p.G96C 0.36 tolerated(0.27) benign(0.011) TCGA-33-4566-01 1 153303198 153303198 C A PGLYRP4 3'UTR 0.31 TCGA-33-4566-01 1 153391800 153391800 G T S100A7A 3'UTR 0.42 TCGA-33-4566-01 1 153791379 153791379 C A GATAD2B Missense_Mutation p.R162L 0.37 deleterious(0) probably_damaging(0.999) TCGA-33-4566-01 1 154574229 154574229 C A ADAR Missense_Mutation p.A297S 0.27 tolerated(0.08) probably_damaging(0.934) TCGA-33-4566-01 1 154904862 154904862 C A PMVK Missense_Mutation p.R42L 0.35 deleterious(0) possibly_damaging(0.88) TCGA-33-4566-01 1 155642415 155642415 C T YY1AP1 Silent p.L311L 0.37 TCGA-33-4566-01 1 156288776 156288776 G A CCT3 Silent p.V214V 0.30 TCGA-33-4566-01 1 156553228 156553228 C A TTC24 Missense_Mutation p.L380M 0.29 deleterious(0) probably_damaging(0.999) TCGA-33-4566-01 1 156642011 156642011 C A NES Missense_Mutation p.V657L 0.31 tolerated(0.06) benign(0.138) TCGA-33-4566-01 1 156823971 156823971 G T INSRR Silent p.G70G 0.31 TCGA-33-4566-01 1 156907135 156907135 C T ARHGEF11 Missense_Mutation p.R1449H 0.34 tolerated_low_confidence(0.23) benign(0.002) TCGA-33-4566-01 1 156928544 156928544 C A ARHGEF11 Nonsense_Mutation p.G498* 0.38 TCGA-33-4566-01 1 157485307 157485307 C - FCRL5 3'UTR 0.36 TCGA-33-4566-01 1 158262530 158262530 G T CD1C Missense_Mutation p.G252V 0.29 deleterious(0) probably_damaging(0.983) TCGA-33-4566-01 1 158725183 158725183 C G OR6K6 Missense_Mutation p.T193S 0.27 tolerated(0.23) benign(0.088) TCGA-33-4566-01 1 158817656 158817656 A T MNDA Missense_Mutation p.T376S 0.33 deleterious(0.05) possibly_damaging(0.636) TCGA-33-4566-01 1 159176115 159176115 C A DARC Missense_Mutation p.H298N 0.31 deleterious(0) probably_damaging(0.998) TCGA-33-4566-01 1 159684305 159684305 G C CRP 5'UTR 0.33 TCGA-33-4566-01 1 160519720 160519720 T A CD84 Missense_Mutation p.Q320L 0.28 deleterious(0) probably_damaging(0.974) TCGA-33-4566-01 1 161130856 161130856 G T USP21 Missense_Mutation p.L142F 0.45 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-33-4566-01 1 161143466 161143466 C A B4GALT3 Missense_Mutation p.Q244H 0.28 tolerated(0.24) benign(0.248) TCGA-33-4566-01 1 161161322 161161322 G A ADAMTS4 Missense_Mutation p.A707V 0.15 tolerated(0.26) benign(0.036) TCGA-33-4566-01 1 161561180 161561180 C T FCGR2C 5'Flank 0.22 TCGA-33-4566-01 1 161561181 161561181 T A FCGR2C 5'Flank 0.23 TCGA-33-4566-01 1 161680596 161680596 G T FCRLA Missense_Mutation p.E65D 0.28 tolerated(0.25) benign(0.003) TCGA-33-4566-01 1 16353885 16353885 G A CLCNKA Missense_Mutation p.G246R 0.31 deleterious(0.02) possibly_damaging(0.873) TCGA-33-4566-01 1 167793991 167793991 G T ADCY10 Missense_Mutation p.L1285I 0.28 tolerated(0.07) probably_damaging(0.947) TCGA-33-4566-01 1 168012380 168012380 T A DCAF6 Splice_Site p.X615_splice 0.38 TCGA-33-4566-01 1 169511512 169511512 G T F5 Nonsense_Mutation p.S939* 0.33 TCGA-33-4566-01 1 170695457 170695457 G T PRRX1 Missense_Mutation p.V172L 0.35 tolerated(0.11) probably_damaging(0.911) TCGA-33-4566-01 1 171086461 171086461 C A FMO3 Nonsense_Mutation p.S493* 0.44 TCGA-33-4566-01 1 171810835 171810835 G T DNM3 Silent p.V13V 0.46 TCGA-33-4566-01 1 17266410 17266410 G T CROCC Missense_Mutation p.A544S 0.10 possibly_damaging(0.646) TCGA-33-4566-01 1 17296397 17296397 G C CROCC Missense_Mutation p.E1807Q 0.23 possibly_damaging(0.607) TCGA-33-4566-01 1 173010461 173010461 G C TNFSF18 3'UTR 0.32 TCGA-33-4566-01 1 173545879 173545879 C A SLC9C2 Missense_Mutation p.G275C 0.24 deleterious(0) probably_damaging(1) TCGA-33-4566-01 1 175355325 175355325 C A TNR Silent p.L540L 0.38 TCGA-33-4566-01 1 17739593 17739593 C A RCC2 Missense_Mutation p.W430L 0.29 deleterious(0) possibly_damaging(0.7) TCGA-33-4566-01 1 178414797 178414797 G T RASAL2 Missense_Mutation p.G543W 0.32 deleterious(0) probably_damaging(1) TCGA-33-4566-01 1 179599950 179599950 G C TDRD5 Missense_Mutation p.V341L 0.33 tolerated(0.14) possibly_damaging(0.747) TCGA-33-4566-01 1 179983075 179983075 G T CEP350 Missense_Mutation p.R496L 0.41 benign(0.314) TCGA-33-4566-01 1 180047715 180047715 G T CEP350 Missense_Mutation p.G1962V 0.24 benign(0.001) TCGA-33-4566-01 1 180886163 180886163 C A KIAA1614 Silent p.L308L 0.34 TCGA-33-4566-01 1 186157125 186157125 C A HMCN1 Silent p.R5509R 0.23 TCGA-33-4566-01 1 186276374 186276374 C A PRG4 Missense_Mutation p.P508H 0.29 unknown(0) TCGA-33-4566-01 1 186312594 186312594 C T TPR Missense_Mutation p.R1205Q 0.36 benign(0.238) TCGA-33-4566-01 1 186925314 186925314 G T PLA2G4A Missense_Mutation p.V473L 0.43 tolerated(0.78) benign(0.004) TCGA-33-4566-01 1 190129813 190129813 C A BRINP3 Missense_Mutation p.S390I 0.33 tolerated(0.48) benign(0.001) TCGA-33-4566-01 1 19199189 19199189 C A ALDH4A1 3'UTR 0.50 TCGA-33-4566-01 1 196577354 196577354 T - KCNT2 Frame_Shift_Del p.N29Tfs*11 0.27 TCGA-33-4566-01 1 197160934 197160934 C A ZBTB41 Missense_Mutation p.V406F 0.35 tolerated(0.11) benign(0.039) TCGA-33-4566-01 1 197403947 197403947 C A CRB1 Missense_Mutation p.A985E 0.29 tolerated(0.39) possibly_damaging(0.608) TCGA-33-4566-01 1 200842988 200842988 C A GPR25 Missense_Mutation p.L275M 0.50 tolerated(0.1) possibly_damaging(0.878) TCGA-33-4566-01 1 200946404 200946404 T A KIF21B Missense_Mutation p.S1421C 0.33 deleterious(0) possibly_damaging(0.792) TCGA-33-4566-01 1 201061168 201061170 CCG AA CACNA1S Frame_Shift_Del p.G158Sfs*29 0.42 TCGA-33-4566-01 1 202573743 202573743 G T SYT2 Missense_Mutation p.P62H 0.30 deleterious(0.03) possibly_damaging(0.893) TCGA-33-4566-01 1 203037726 203037726 G T PPFIA4 Silent p.L592L 0.47 TCGA-33-4566-01 1 203186086 203186086 C G CHIT1 Silent p.R444R 0.29 TCGA-33-4566-01 1 204943341 204943341 G C NFASC Missense_Mutation p.Q438H 0.29 deleterious(0.05) probably_damaging(0.991) TCGA-33-4566-01 1 205033820 205033820 C G CNTN2 Silent p.T487T 0.14 TCGA-33-4566-01 1 207753697 207753697 A T CR1 Missense_Mutation p.R1683S 0.34 deleterious(0.03) possibly_damaging(0.642) TCGA-33-4566-01 1 209799241 209799241 C A LAMB3 Silent p.P576P 0.46 TCGA-33-4566-01 1 209933636 209933636 C A TRAF3IP3 Silent p.A84A 0.33 TCGA-33-4566-01 1 209965773 209965773 C A IRF6 Splice_Site p.X170_splice 0.31 TCGA-33-4566-01 1 210334354 210334354 A G SYT14 Silent p.Q609Q 0.32 TCGA-33-4566-01 1 21042056 21042056 C A KIF17 Missense_Mutation p.G103V 0.27 deleterious(0) probably_damaging(0.999) TCGA-33-4566-01 1 210948806 210948806 A T KCNH1 Missense_Mutation p.Y666N 0.32 deleterious(0) probably_damaging(1) TCGA-33-4566-01 1 21144032 21144032 C G EIF4G3 Splice_Site p.X1407_splice 0.24 TCGA-33-4566-01 1 211840304 211840304 T A NEK2 Intron 0.44 TCGA-33-4566-01 1 212799154 212799154 T C FAM71A Missense_Mutation p.I312T 0.32 tolerated(0.26) benign(0.005) TCGA-33-4566-01 1 214556843 214556843 T A PTPN14 Silent p.P785P 0.39 TCGA-33-4566-01 1 215844504 215844504 C A USH2A Missense_Mutation p.G4648V 0.30 benign(0.285) TCGA-33-4566-01 1 215844505 215844505 C G USH2A Missense_Mutation p.G4648R 0.31 benign(0.159) TCGA-33-4566-01 1 215847647 215847647 C T USH2A Missense_Mutation p.E4536K 0.30 benign(0.012) TCGA-33-4566-01 1 215847895 215847895 T A USH2A Missense_Mutation p.Q4453L 0.27 benign(0.009) TCGA-33-4566-01 1 215848719 215848719 A T USH2A Silent p.P4178P 0.32 TCGA-33-4566-01 1 215953204 215953204 C A USH2A Missense_Mutation p.R3640S 0.35 benign(0.082) TCGA-33-4566-01 1 216144085 216144085 C G USH2A Missense_Mutation p.G2280A 0.24 possibly_damaging(0.896) TCGA-33-4566-01 1 216737693 216737693 C G ESRRG Missense_Mutation p.A256P 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-33-4566-01 1 220440882 220440882 C A RAB3GAP2 Intron 0.25 TCGA-33-4566-01 1 221053252 221053252 C A HLX Nonsense_Mutation p.S18* 0.32 TCGA-33-4566-01 1 22307651 22307651 G C CELA3B Silent p.S116S 0.24 TCGA-33-4566-01 1 223168310 223168310 G T DISP1 Missense_Mutation p.V325L 0.30 tolerated(0.51) benign(0.001) TCGA-33-4566-01 1 223176710 223176710 G A DISP1 Silent p.V657V 0.39 TCGA-33-4566-01 1 223285332 223285332 G A TLR5 Silent p.L348L 0.32 TCGA-33-4566-01 1 226173192 226173192 C G SDE2 Silent p.A389A 0.28 TCGA-33-4566-01 1 226175617 226175617 C A SDE2 Nonsense_Mutation p.E372* 0.34 TCGA-33-4566-01 1 226555963 226555963 G A PARP1 Silent p.T738T 0.40 TCGA-33-4566-01 1 22921766 22921766 G T EPHA8 Silent p.T549T 0.15 TCGA-33-4566-01 1 229568343 229568343 G A ACTA1 Silent p.I138I 0.41 TCGA-33-4566-01 1 229770871 229770871 G T URB2 Nonsense_Mutation p.E171* 0.38 TCGA-33-4566-01 1 231829612 231829612 G T DISC1 Missense_Mutation p.R36S 0.32 deleterious(0) possibly_damaging(0.895) TCGA-33-4566-01 1 23420350 23420350 G A LUZP1 Silent p.T135T 0.25 TCGA-33-4566-01 1 23637164 23637164 C T HNRNPR Missense_Mutation p.R565Q 0.19 tolerated(0.22) unknown(0) TCGA-33-4566-01 1 236590723 236590723 C A EDARADD Nonsense_Mutation p.C64* 0.19 TCGA-33-4566-01 1 236767425 236767425 G A HEATR1 Intron 0.39 TCGA-33-4566-01 1 237580371 237580371 G T RYR2 Missense_Mutation p.A266S 0.25 benign(0.124) TCGA-33-4566-01 1 237729917 237729917 C A RYR2 Missense_Mutation p.R1089S 0.35 probably_damaging(0.997) TCGA-33-4566-01 1 237758948 237758948 A G RYR2 Silent p.T1529T 0.33 TCGA-33-4566-01 1 237813349 237813349 C A RYR2 Missense_Mutation p.T2562N 0.32 probably_damaging(0.999) TCGA-33-4566-01 1 237837496 237837496 G C RYR2 Missense_Mutation p.Q2897H 0.38 probably_damaging(0.989) TCGA-33-4566-01 1 237947642 237947642 C A RYR2 Missense_Mutation p.D4210E 0.32 benign(0.074) TCGA-33-4566-01 1 237972324 237972324 G T RYR2 Missense_Mutation p.D4808Y 0.34 probably_damaging(0.993) TCGA-33-4566-01 1 238053840 238053840 G T ZP4 Silent p.L32L 0.27 TCGA-33-4566-01 1 238053887 238053887 C A ZP4 Missense_Mutation p.V17L 0.22 tolerated(1) benign(0) TCGA-33-4566-01 1 240070879 240070879 C A CHRM3 Missense_Mutation p.S43Y 0.26 deleterious(0.04) benign(0.068) TCGA-33-4566-01 1 242052766 242052766 G T EXO1 Splice_Site p.X802_splice 0.16 TCGA-33-4566-01 1 242052767 242052767 A T EXO1 Missense_Mutation p.K802N 0.17 deleterious(0.04) probably_damaging(0.979) TCGA-33-4566-01 1 242052787 242052787 C T EXO1 Missense_Mutation p.P809L 0.19 deleterious(0.04) benign(0.013) TCGA-33-4566-01 1 244579333 244579333 T A ADSS Missense_Mutation p.K373I 0.28 deleterious(0) probably_damaging(0.977) TCGA-33-4566-01 1 246810488 246810488 A G CNST Missense_Mutation p.T329A 0.28 tolerated(0.56) benign(0.007) TCGA-33-4566-01 1 246929399 246929399 C A SCCPDH Missense_Mutation p.A381E 0.28 deleterious(0) probably_damaging(0.913) TCGA-33-4566-01 1 247615153 247615153 C A OR2B11 Missense_Mutation p.L44F 0.35 tolerated(0.47) probably_damaging(0.994) TCGA-33-4566-01 1 247694937 247694937 G A OR2C3 Silent p.L293L 0.29 TCGA-33-4566-01 1 247902391 247902391 G C OR14K1 Missense_Mutation p.A159P 0.27 deleterious(0.01) probably_damaging(0.975) TCGA-33-4566-01 1 247978123 247978123 C A OR14A16 Missense_Mutation p.K303N 0.30 tolerated(0.44) benign(0.07) TCGA-33-4566-01 1 248004856 248004856 G T OR11L1 Missense_Mutation p.L115M 0.39 deleterious(0) probably_damaging(0.999) TCGA-33-4566-01 1 248028214 248028214 C G TRIM58 Missense_Mutation p.R242G 0.25 deleterious(0.04) benign(0.124) TCGA-33-4566-01 1 248039289 248039289 G T TRIM58 Missense_Mutation p.R320M 0.24 deleterious(0.01) possibly_damaging(0.866) TCGA-33-4566-01 1 248129078 248129078 A T OR2AK2 Missense_Mutation p.M149L 0.34 tolerated(0.12) benign(0) TCGA-33-4566-01 1 248224876 248224876 G T OR2L3 Missense_Mutation p.G298V 0.20 deleterious(0.01) possibly_damaging(0.588) TCGA-33-4566-01 1 248436847 248436847 G T OR2T33 Silent p.I90I 0.22 TCGA-33-4566-01 1 248616772 248616772 C G OR2T2 Missense_Mutation p.T225S 0.58 deleterious(0.01) possibly_damaging(0.45) TCGA-33-4566-01 1 248637345 248637345 A T OR2T3 Missense_Mutation p.R232W 0.21 deleterious(0.02) probably_damaging(0.954) TCGA-33-4566-01 1 248737365 248737365 T A OR2T34 Missense_Mutation p.R232W 0.13 deleterious(0.02) probably_damaging(0.954) TCGA-33-4566-01 1 248738021 248738021 G T OR2T34 Missense_Mutation p.A13E 0.20 tolerated(0.79) benign(0.016) TCGA-33-4566-01 1 26142208 26142208 A G SEPN1 Nonstop_Mutation p.*591Wext*? 0.29 TCGA-33-4566-01 1 26189347 26189347 G A PAQR7 Silent p.L328L 0.34 TCGA-33-4566-01 1 26349777 26349777 C A EXTL1 Missense_Mutation p.Q214K 0.25 tolerated(0.29) benign(0.034) TCGA-33-4566-01 1 27434310 27434310 T A SLC9A1 Missense_Mutation p.I371F 0.44 deleterious(0) probably_damaging(0.959) TCGA-33-4566-01 1 27700903 27700903 G T FCN3 Missense_Mutation p.P44H 0.19 tolerated(0.07) probably_damaging(0.951) TCGA-33-4566-01 1 32196882 32196882 C A BAI2 Missense_Mutation p.G1300V 0.30 deleterious(0) probably_damaging(1) TCGA-33-4566-01 1 32259485 32259485 C T SPOCD1 Silent p.S799S 0.20 TCGA-33-4566-01 1 34006158 34006158 C T CSMD2 Missense_Mutation p.G3056R 0.24 deleterious(0.03) possibly_damaging(0.873) TCGA-33-4566-01 1 36298081 36298081 G T AGO4 Missense_Mutation p.R430L 0.29 deleterious(0) possibly_damaging(0.828) TCGA-33-4566-01 1 36939205 36939205 C A CSF3R Missense_Mutation p.Q168H 0.36 deleterious(0.01) benign(0.091) TCGA-33-4566-01 1 36941175 36941175 A T CSF3R Missense_Mutation p.L55Q 0.26 deleterious(0.03) benign(0.071) TCGA-33-4566-01 1 38005790 38005790 A T SNIP1 Silent p.S298S 0.28 TCGA-33-4566-01 1 39916832 39916832 G T MACF1 Missense_Mutation p.Q4730H 0.22 probably_damaging(0.997) TCGA-33-4566-01 1 40432551 40432551 G T MFSD2A Missense_Mutation p.G305C 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-33-4566-01 1 40701552 40701552 C G RLF Nonsense_Mutation p.S393* 0.31 TCGA-33-4566-01 1 40981204 40981204 C T EXO5 Nonsense_Mutation p.R330* 0.20 TCGA-33-4566-01 1 40981278 40981278 G T EXO5 Missense_Mutation p.W354C 0.17 deleterious(0) probably_damaging(1) TCGA-33-4566-01 1 43632543 43632543 C A EBNA1BP2 Missense_Mutation p.A276S 0.27 tolerated(0.67) benign(0.004) TCGA-33-4566-01 1 43805701 43805701 T C MPL Missense_Mutation p.W253R 0.24 tolerated(0.81) benign(0.01) TCGA-33-4566-01 1 44085828 44085828 G T PTPRF Missense_Mutation p.R1725L 0.31 deleterious(0) probably_damaging(1) TCGA-33-4566-01 1 45232789 45232789 C A KIF2C Missense_Mutation p.L706M 0.20 tolerated(0.11) benign(0.395) TCGA-33-4566-01 1 52956403 52956403 C A ZCCHC11 Splice_Site p.X463_splice 0.24 TCGA-33-4566-01 1 54395743 54395743 C A HSPB11 Missense_Mutation p.R58S 0.32 tolerated(0.14) benign(0.198) TCGA-33-4566-01 1 54605533 54605533 C - CDCP2 Frame_Shift_Del p.G337Dfs*8 0.32 TCGA-33-4566-01 1 57340725 57340725 G A C8A Missense_Mutation p.R92K 0.47 tolerated(0.94) benign(0.002) TCGA-33-4566-01 1 57602255 57602255 G A DAB1 Silent p.I89I 0.19 TCGA-33-4566-01 1 60073511 60073511 G T FGGY Missense_Mutation p.G314W 0.22 deleterious(0) probably_damaging(0.998) TCGA-33-4566-01 1 6133813 6133813 G A KCNAB2 Missense_Mutation p.G95S 0.20 tolerated(0.31) benign(0.015) TCGA-33-4566-01 1 6155592 6155592 G T KCNAB2 Missense_Mutation p.V286L 0.27 tolerated(0.17) benign(0.003) TCGA-33-4566-01 1 62593659 62593659 C G INADL Missense_Mutation p.L1687V 0.25 deleterious(0) probably_damaging(0.98) TCGA-33-4566-01 1 62718789 62718789 C T KANK4 Missense_Mutation p.V878I 0.23 deleterious(0.03) benign(0.002) TCGA-33-4566-01 1 62734158 62734158 C T KANK4 Missense_Mutation p.E678K 0.23 deleterious(0) possibly_damaging(0.636) TCGA-33-4566-01 1 64606046 64606046 G C ROR1 Missense_Mutation p.E289Q 0.19 tolerated(0.21) possibly_damaging(0.533) TCGA-33-4566-01 1 65243601 65243601 G T RAVER2 Missense_Mutation p.L204F 0.23 deleterious(0) possibly_damaging(0.901) TCGA-33-4566-01 1 6526178 6526178 C A TNFRSF25 5'UTR 0.33 TCGA-33-4566-01 1 65849883 65849883 G T DNAJC6 Missense_Mutation p.R225L 0.21 deleterious(0) possibly_damaging(0.6) TCGA-33-4566-01 1 6586794 6586794 C T NOL9 Missense_Mutation p.G641R 0.29 deleterious(0) probably_damaging(1) TCGA-33-4566-01 1 68947132 68947132 C A DEPDC1 Silent p.T642T 0.20 TCGA-33-4566-01 1 70385429 70385429 C A LRRC7 Intron 0.35 TCGA-33-4566-01 1 70541817 70541817 G T LRRC7 Nonsense_Mutation p.E1392* 0.23 TCGA-33-4566-01 1 75036790 75036790 C T C1orf173 3'UTR 0.24 TCGA-33-4566-01 1 75036891 75036891 A C C1orf173 Silent p.P1501P 0.26 TCGA-33-4566-01 1 75672193 75672193 C G SLC44A5 3'UTR 0.26 TCGA-33-4566-01 1 75684269 75684269 G C SLC44A5 Missense_Mutation p.L479V 0.27 deleterious(0) possibly_damaging(0.85) TCGA-33-4566-01 1 75702728 75702729 - T SLC44A5 Frame_Shift_Ins p.S229Vfs*8 0.21 TCGA-33-4566-01 1 77759493 77759493 C A AK5 Nonsense_Mutation p.S88* 0.24 TCGA-33-4566-01 1 7887206 7887206 G T PER3 Silent p.S731S 0.19 TCGA-33-4566-01 1 79383371 79383371 G T ELTD1 Missense_Mutation p.T566N 0.17 deleterious(0.01) probably_damaging(1) TCGA-33-4566-01 1 8073377 8073377 C A ERRFI1 Missense_Mutation p.A428S 0.23 tolerated_low_confidence(0.14) benign(0.004) TCGA-33-4566-01 1 8384421 8384421 G T SLC45A1 Missense_Mutation p.G11V 0.27 deleterious_low_confidence(0.01) benign(0.221) TCGA-33-4566-01 1 84867636 84867636 G T DNASE2B Missense_Mutation p.G60W 0.29 deleterious(0) probably_damaging(1) TCGA-33-4566-01 1 86919105 86919105 C A CLCA2 Silent p.R737R 0.16 TCGA-33-4566-01 1 89279243 89279243 G T PKN2 Silent p.L702L 0.23 TCGA-33-4566-01 1 90049959 90049959 A G LRRC8B Missense_Mutation p.M584V 0.27 tolerated(0.05) benign(0.01) TCGA-33-4566-01 1 91818174 91818175 - A HFM1 Frame_Shift_Ins p.L622Ffs*20 0.19 TCGA-33-4566-01 1 92441951 92441951 G C BRDT Missense_Mutation p.V192L 0.22 tolerated(0.08) benign(0.001) TCGA-33-4566-01 1 94018055 94018055 G T FNBP1L 3'UTR 0.29 TCGA-33-4566-01 1 94502905 94502905 C A ABCA4 Silent p.G1203G 0.28 TCGA-33-4566-01 1 95709926 95709926 C G RWDD3 Missense_Mutation p.T82S 0.21 tolerated(0.77) benign(0.072) TCGA-33-4566-01 20 170231 170231 A T DEFB128 Missense_Mutation p.F12I 0.46 tolerated(0.1) unknown(0) TCGA-33-4566-01 20 23424651 23424651 C A CSTL1 Silent p.S100S 0.45 TCGA-33-4566-01 20 23433221 23433221 C A CST11 Missense_Mutation p.Q76H 0.56 deleterious(0.02) possibly_damaging(0.739) TCGA-33-4566-01 20 2375200 2375200 C A TGM6 Nonsense_Mutation p.S37* 0.56 TCGA-33-4566-01 20 2398085 2398085 T A TGM6 Missense_Mutation p.L515Q 0.68 deleterious(0) probably_damaging(0.991) TCGA-33-4566-01 20 2641176 2641176 C A IDH3B Missense_Mutation p.A198S 0.59 tolerated(0.06) probably_damaging(0.988) TCGA-33-4566-01 20 2774982 2774982 C A CPXM1 Missense_Mutation p.V687F 0.51 deleterious(0) probably_damaging(0.999) TCGA-33-4566-01 20 2775967 2775967 C A CPXM1 Nonsense_Mutation p.E606* 0.60 TCGA-33-4566-01 20 30070204 30070204 C A REM1 Silent p.R180R 0.62 TCGA-33-4566-01 20 31368124 31368124 G T DNMT3B Intron 0.52 TCGA-33-4566-01 20 31828181 31828181 C A BPIFA1 Missense_Mutation p.L191M 0.47 deleterious(0) probably_damaging(0.988) TCGA-33-4566-01 20 3233244 3233244 G C C20orf194 Missense_Mutation p.H1170D 0.51 tolerated(0.21) benign(0.281) TCGA-33-4566-01 20 33585348 33585348 C A MYH7B Missense_Mutation p.Q1260K 0.62 probably_damaging(0.99) TCGA-33-4566-01 20 35635932 35635932 C G RBL1 Missense_Mutation p.C918S 0.45 tolerated(0.82) benign(0.001) TCGA-33-4566-01 20 3660146 3660146 T G ADAM33 Missense_Mutation p.E57A 0.46 tolerated(0.42) possibly_damaging(0.902) TCGA-33-4566-01 20 3759136 3759136 C A SPEF1 Missense_Mutation p.D179Y 0.62 deleterious(0) possibly_damaging(0.88) TCGA-33-4566-01 20 377002 377002 G T TRIB3 Missense_Mutation p.V249L 0.56 deleterious(0) probably_damaging(0.999) TCGA-33-4566-01 20 3802836 3802836 G C AP5S1 Silent p.L24L 0.53 TCGA-33-4566-01 20 42242569 42242569 G C IFT52 Missense_Mutation p.V189L 0.52 deleterious(0.04) benign(0.067) TCGA-33-4566-01 20 42885970 42885970 C A GDAP1L1 Missense_Mutation p.R120S 0.50 tolerated(0.22) benign(0.115) TCGA-33-4566-01 20 44506325 44506325 G T ZSWIM3 Silent p.L376L 0.54 TCGA-33-4566-01 20 44645004 44645004 C A MMP9 Missense_Mutation p.D707E 0.44 tolerated_low_confidence(0.43) benign(0) TCGA-33-4566-01 20 44671797 44671797 C A SLC12A5 Missense_Mutation p.L381I 0.55 tolerated(0.19) possibly_damaging(0.76) TCGA-33-4566-01 20 44685005 44685005 T A SLC12A5 Missense_Mutation p.V994E 0.60 tolerated(0.23) benign(0.013) TCGA-33-4566-01 20 45702822 45702822 C A EYA2 Missense_Mutation p.P170H 0.58 deleterious(0) possibly_damaging(0.754) TCGA-33-4566-01 20 46294641 46294641 A G SULF2 Missense_Mutation p.L621P 0.48 tolerated(0.32) possibly_damaging(0.888) TCGA-33-4566-01 20 47444245 47444245 G A PREX1 Silent p.L51L 0.70 TCGA-33-4566-01 20 49221208 49221208 G T FAM65C Missense_Mutation p.P350T 0.48 deleterious(0) probably_damaging(1) TCGA-33-4566-01 20 50401059 50401059 C A SALL4 Missense_Mutation p.W969C 0.47 tolerated(0.07) probably_damaging(0.999) TCGA-33-4566-01 20 50769287 50769287 C G ZFP64 Missense_Mutation p.V482L 0.37 tolerated(0.11) probably_damaging(0.978) TCGA-33-4566-01 20 51872902 51872902 C G TSHZ2 Missense_Mutation p.Q969E 0.38 tolerated(0.17) benign(0.077) TCGA-33-4566-01 20 5283322 5283322 C A PROKR2 Silent p.L173L 0.48 TCGA-33-4566-01 20 55943782 55943782 G C RAE1 Missense_Mutation p.A186P 0.18 deleterious(0) possibly_damaging(0.843) TCGA-33-4566-01 20 57035882 57035882 G T APCDD1L Silent p.P490P 0.48 TCGA-33-4566-01 20 57599252 57599252 T C TUBB1 Missense_Mutation p.M257T 0.25 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-33-4566-01 20 57611616 57611616 T A SLMO2 Silent p.T125T 0.20 TCGA-33-4566-01 20 57767530 57767530 C A ZNF831 Missense_Mutation p.H486N 0.19 deleterious(0) probably_damaging(0.996) TCGA-33-4566-01 20 57768676 57768676 G T ZNF831 Missense_Mutation p.G868C 0.18 tolerated(0.12) possibly_damaging(0.808) TCGA-33-4566-01 20 58330353 58330353 G A PHACTR3 Missense_Mutation p.A159T 0.21 tolerated(0.09) possibly_damaging(0.836) TCGA-33-4566-01 20 58342374 58342374 G T PHACTR3 Silent p.V225V 0.27 TCGA-33-4566-01 20 60318840 60318840 C A CDH4 Missense_Mutation p.H131N 0.24 tolerated(0.33) benign(0.103) TCGA-33-4566-01 20 60427941 60427941 G A CDH4 Silent p.E288E 0.21 TCGA-33-4566-01 20 61522319 61522319 C A DIDO1 Missense_Mutation p.E1178D 0.24 probably_damaging(0.996) TCGA-33-4566-01 20 62192805 62192805 T A HELZ2 Missense_Mutation p.H2284L 0.35 deleterious(0) probably_damaging(0.999) TCGA-33-4566-01 20 62196727 62196727 C T HELZ2 Missense_Mutation p.A1150T 0.28 tolerated(0.77) benign(0.01) TCGA-33-4566-01 21 17191131 17191131 T C USP25 Missense_Mutation p.L349S 0.16 deleterious(0.04) possibly_damaging(0.849) TCGA-33-4566-01 21 28305220 28305220 G T ADAMTS5 Silent p.A611A 0.62 TCGA-33-4566-01 21 31768661 31768661 C A KRTAP13-1 Missense_Mutation p.S86Y 0.57 tolerated(0.05) possibly_damaging(0.548) TCGA-33-4566-01 21 31986182 31986182 G T KRTAP6-1 Silent p.G14G 0.60 TCGA-33-4566-01 21 32639255 32639255 C G TIAM1 Missense_Mutation p.E12Q 0.50 tolerated_low_confidence(0.2) benign(0.003) TCGA-33-4566-01 21 33331214 33331214 G T HUNK Missense_Mutation p.S269I 0.64 deleterious(0) probably_damaging(0.998) TCGA-33-4566-01 21 33840109 33840109 A T EVA1C Missense_Mutation p.Q196L 0.59 deleterious(0.05) benign(0.155) TCGA-33-4566-01 21 35468733 35468733 G T SLC5A3 Missense_Mutation p.R412S 0.51 deleterious(0) probably_damaging(0.997) TCGA-33-4566-01 21 41385199 41385199 C A DSCAM Missense_Mutation p.S1934I 0.57 tolerated_low_confidence(0.07) benign(0.128) TCGA-33-4566-01 21 41684139 41684139 G A DSCAM Missense_Mutation p.T644I 0.49 deleterious(0.01) probably_damaging(0.953) TCGA-33-4566-01 21 41711138 41711138 G T DSCAM Missense_Mutation p.S472Y 0.57 deleterious(0) possibly_damaging(0.892) TCGA-33-4566-01 21 41741060 41741060 C G DSCAM Silent p.T207T 0.61 TCGA-33-4566-01 21 43528457 43528457 A T C21orf128 Silent p.A12A 0.55 TCGA-33-4566-01 21 45679433 45679433 C A DNMT3L Splice_Site p.X78_splice 0.63 TCGA-33-4566-01 22 16287481 16287481 C A POTEH Missense_Mutation p.M135I 0.19 deleterious_low_confidence(0.01) benign(0.064) TCGA-33-4566-01 22 17071693 17071693 C A CCT8L2 3'UTR 0.33 TCGA-33-4566-01 22 17446085 17446085 C A GAB4 Missense_Mutation p.E454D 0.55 deleterious(0.01) benign(0.019) TCGA-33-4566-01 22 17619154 17619154 C A CECR5 Silent p.G343G 0.47 TCGA-33-4566-01 22 23406114 23406114 G T RTDR1 Missense_Mutation p.R207S 0.60 deleterious(0) probably_damaging(0.988) TCGA-33-4566-01 22 25308718 25308718 A C SGSM1 Missense_Mutation p.Q1031P 0.33 deleterious(0) probably_damaging(0.999) TCGA-33-4566-01 22 26706681 26706681 C A SEZ6L Nonsense_Mutation p.Y520* 0.55 TCGA-33-4566-01 22 30070892 30070892 C T NF2 Nonsense_Mutation p.Q470* 0.36 TCGA-33-4566-01 22 30659938 30659938 C A OSM Silent p.G231G 0.60 TCGA-33-4566-01 22 31724897 31724897 G C PATZ1 Silent p.A507A 0.31 TCGA-33-4566-01 22 32555175 32555175 C A C22orf42 Missense_Mutation p.G10C 0.45 tolerated_low_confidence(0.07) probably_damaging(0.984) TCGA-33-4566-01 22 37966599 37966599 G T LGALS2 Missense_Mutation p.P78Q 0.52 tolerated(0.46) benign(0.073) TCGA-33-4566-01 22 42486953 42486953 A G NDUFA6 5'UTR 0.37 TCGA-33-4566-01 22 43599942 43599942 G A SCUBE1 3'UTR 0.50 TCGA-33-4566-01 22 44564566 44564566 G T PARVB 3'UTR 0.47 TCGA-33-4566-01 22 46085626 46085626 C A ATXN10 Missense_Mutation p.L51M 0.57 tolerated(0.07) possibly_damaging(0.472) TCGA-33-4566-01 22 46704301 46704301 G A GTSE1 Missense_Mutation p.V75I 0.54 tolerated(1) benign(0.002) TCGA-33-4566-01 22 47507500 47507500 G T TBC1D22A Splice_Site p.X475_splice 0.49 TCGA-33-4566-01 22 50216964 50216964 G C BRD1 Silent p.G334G 0.52 TCGA-33-4566-01 22 50470358 50470358 G T TTLL8 Silent p.A504A 0.50 TCGA-33-4566-01 22 50547090 50547090 G C MOV10L1 Missense_Mutation p.C187S 0.51 tolerated(0.47) benign(0.022) TCGA-33-4566-01 2 100343538 100343538 C T AFF3 Splice_Site p.X389_splice 0.22 TCGA-33-4566-01 2 100910719 100910719 C A LONRF2 Missense_Mutation p.G577C 0.40 deleterious(0) probably_damaging(1) TCGA-33-4566-01 2 101604630 101604630 A T NPAS2 Silent p.A573A 0.21 TCGA-33-4566-01 2 103040825 103040825 G A IL18RAP Missense_Mutation p.S177N 0.18 deleterious(0.01) possibly_damaging(0.735) TCGA-33-4566-01 2 108608580 108608580 G T SLC5A7 Missense_Mutation p.G66V 0.18 deleterious(0.02) probably_damaging(0.98) TCGA-33-4566-01 2 109400452 109400452 G C RANBP2 3'UTR 0.17 TCGA-33-4566-01 2 110015230 110015230 A T SH3RF3 Missense_Mutation p.K377M 0.27 deleterious(0) probably_damaging(0.989) TCGA-33-4566-01 2 114257000 114257000 A T FOXD4L1 Missense_Mutation p.Q56L 0.21 tolerated(0.07) benign(0.006) TCGA-33-4566-01 2 114512771 114512771 T C SLC35F5 Missense_Mutation p.I82V 0.16 deleterious(0.05) possibly_damaging(0.695) TCGA-33-4566-01 2 11735431 11735431 A G GREB1 Missense_Mutation p.Q584R 0.38 deleterious(0.01) probably_damaging(0.99) TCGA-33-4566-01 2 120369312 120369312 A G PCDP1 Silent p.Q435Q 0.34 TCGA-33-4566-01 2 125261959 125261959 C A CNTNAP5 Missense_Mutation p.P384T 0.32 tolerated(0.17) possibly_damaging(0.78) TCGA-33-4566-01 2 125504814 125504814 C A CNTNAP5 Missense_Mutation p.P695T 0.45 deleterious(0) probably_damaging(0.971) TCGA-33-4566-01 2 128380938 128380938 C A MYO7B Silent p.A1243A 0.19 TCGA-33-4566-01 2 128389280 128389280 A T MYO7B Missense_Mutation p.D1708V 0.18 deleterious(0) probably_damaging(1) TCGA-33-4566-01 2 128477377 128477377 T A WDR33 Missense_Mutation p.Q741L 0.23 deleterious_low_confidence(0) unknown(0) TCGA-33-4566-01 2 130832735 130832735 G T POTEF Silent p.P770P 0.22 TCGA-33-4566-01 2 130897166 130897166 C G CCDC74B Missense_Mutation p.A369P 0.35 tolerated(0.06) probably_damaging(0.966) TCGA-33-4566-01 2 131520578 131520578 C A AMER3 Missense_Mutation p.D311E 0.41 tolerated(0.07) benign(0.252) TCGA-33-4566-01 2 132233725 132233725 C A TUBA3D 5'UTR 0.56 TCGA-33-4566-01 2 132258077 132258077 A T AC093838.4 Splice_Site 0.44 TCGA-33-4566-01 2 133540837 133540837 C A NCKAP5 Missense_Mutation p.V1183L 0.20 deleterious(0) probably_damaging(0.962) TCGA-33-4566-01 2 133547683 133547683 G T NCKAP5 Missense_Mutation p.S335R 0.33 deleterious(0) probably_damaging(0.986) TCGA-33-4566-01 2 135308166 135308166 C A TMEM163 Missense_Mutation p.V145L 0.36 tolerated(0.14) possibly_damaging(0.876) TCGA-33-4566-01 2 135741288 135741288 T C MAP3K19 Silent p.L1060L 0.42 TCGA-33-4566-01 2 139428622 139428622 C A NXPH2 Missense_Mutation p.W222L 0.15 deleterious(0) probably_damaging(1) TCGA-33-4566-01 2 139428799 139428799 G T NXPH2 Missense_Mutation p.P163H 0.20 deleterious(0) probably_damaging(1) TCGA-33-4566-01 2 141253291 141253291 C A LRP1B Silent p.L2959L 0.12 TCGA-33-4566-01 2 141571229 141571229 T C LRP1B Missense_Mutation p.M1786V 0.28 benign(0.019) TCGA-33-4566-01 2 144899607 144899607 C G GTDC1 Silent p.V121V 0.34 TCGA-33-4566-01 2 14774610 14774610 G T FAM84A Silent p.A169A 0.19 TCGA-33-4566-01 2 152404000 152404000 A C NEB Silent p.S6770S 0.15 TCGA-33-4566-01 2 155115539 155115539 C G GALNT13 Missense_Mutation p.P288R 0.15 deleterious(0) probably_damaging(0.997) TCGA-33-4566-01 2 155711481 155711481 T A KCNJ3 Missense_Mutation p.C388S 0.19 tolerated(0.3) benign(0.08) TCGA-33-4566-01 2 15613423 15613423 C A NBAS Missense_Mutation p.G550C 0.25 deleterious(0.01) benign(0.099) TCGA-33-4566-01 2 15757435 15757435 C G DDX1 Missense_Mutation p.S362C 0.41 deleterious(0) probably_damaging(0.95) TCGA-33-4566-01 2 158142595 158142595 G T GALNT5 Nonsense_Mutation p.E564* 0.34 TCGA-33-4566-01 2 159028705 159028705 A G CCDC148 Missense_Mutation p.Y566H 0.17 deleterious(0) probably_damaging(0.934) TCGA-33-4566-01 2 160304783 160304783 C A BAZ2B Nonsense_Mutation p.G158* 0.15 TCGA-33-4566-01 2 160741801 160741801 C A LY75-CD302 Missense_Mutation p.R306M 0.34 tolerated(1) benign(0.002) TCGA-33-4566-01 2 165349409 165349409 C A GRB14 3'UTR 0.31 TCGA-33-4566-01 2 166027021 166027021 C A SCN3A Missense_Mutation p.R101L 0.49 deleterious(0) probably_damaging(0.998) TCGA-33-4566-01 2 166245798 166245798 C G SCN2A Missense_Mutation p.P1828A 0.17 deleterious(0) probably_damaging(0.998) TCGA-33-4566-01 2 166848855 166848855 C T SCN1A Missense_Mutation p.G1644S 0.17 deleterious(0) probably_damaging(0.999) TCGA-33-4566-01 2 167301326 167301326 C A SCN7A Missense_Mutation p.L524F 0.42 deleterious(0) benign(0.393) TCGA-33-4566-01 2 168100283 168100283 G T XIRP2 Missense_Mutation p.G794V 0.21 probably_damaging(1) TCGA-33-4566-01 2 168104217 168104217 G T XIRP2 Silent p.L2105L 0.39 TCGA-33-4566-01 2 168105195 168105195 G T XIRP2 Missense_Mutation p.K2431N 0.39 possibly_damaging(0.888) TCGA-33-4566-01 2 168726221 168726221 G A B3GALT1 Silent p.R224R 0.16 TCGA-33-4566-01 2 170103263 170103263 C G LRP2 Missense_Mutation p.V1048L 0.20 benign(0.101) TCGA-33-4566-01 2 175437023 175437023 C A WIPF1 Silent p.P170P 0.26 TCGA-33-4566-01 2 176965022 176965022 G T HOXD12 Missense_Mutation p.D165Y 0.30 deleterious(0.04) possibly_damaging(0.84) TCGA-33-4566-01 2 17698070 17698070 C A RAD51AP2 Missense_Mutation p.C538F 0.07 tolerated(0.56) benign(0.162) TCGA-33-4566-01 2 17699345 17699345 C A RAD51AP2 Missense_Mutation p.S113I 0.34 deleterious(0.01) possibly_damaging(0.838) TCGA-33-4566-01 2 178494019 178494019 G T PDE11A 3'UTR 0.56 TCGA-33-4566-01 2 179431400 179431400 T C TTN Missense_Mutation p.K26487E 0.41 TCGA-33-4566-01 2 179434750 179434750 A G TTN Missense_Mutation p.I25370T 0.22 TCGA-33-4566-01 2 179437167 179437167 T C TTN Silent p.K24564K 0.27 TCGA-33-4566-01 2 179439252 179439252 A T TTN Missense_Mutation p.N23869K 0.18 TCGA-33-4566-01 2 179486603 179486603 T C TTN Missense_Mutation p.R15016G 0.19 TCGA-33-4566-01 2 17954485 17954485 G T GEN1 Splice_Site p.X331_splice 0.47 TCGA-33-4566-01 2 179585181 179585181 C T TTN Missense_Mutation p.G7770R 0.20 TCGA-33-4566-01 2 179605898 179605898 G T TTN Missense_Mutation p.T4021N 0.17 TCGA-33-4566-01 2 179611228 179611228 G T TTN Intron 0.20 TCGA-33-4566-01 2 179640772 179640772 C G TTN Missense_Mutation p.R1940T 0.20 TCGA-33-4566-01 2 179644907 179644907 G C TTN Silent p.S1183S 0.20 TCGA-33-4566-01 2 179658139 179658139 G C TTN Missense_Mutation p.H510D 0.40 TCGA-33-4566-01 2 182409456 182409456 G T CERKL Missense_Mutation p.L472M 0.47 deleterious(0) probably_damaging(1) TCGA-33-4566-01 2 185802585 185802585 C G ZNF804A Missense_Mutation p.P821R 0.30 tolerated(0.54) benign(0.022) TCGA-33-4566-01 2 186678561 186678561 C G FSIP2 Missense_Mutation p.T6795R 0.43 possibly_damaging(0.727) TCGA-33-4566-01 2 18745242 18745242 G T NT5C1B Silent p.T551T 0.35 TCGA-33-4566-01 2 187521118 187521118 C T ITGAV Missense_Mutation p.A570V 0.41 tolerated(0.8) benign(0.144) TCGA-33-4566-01 2 1893231 1893231 C A MYT1L Missense_Mutation p.D766Y 0.15 deleterious(0) probably_damaging(0.996) TCGA-33-4566-01 2 198650719 198650719 G T BOLL Silent p.T3T 0.20 TCGA-33-4566-01 2 201438624 201438624 A T SGOL2 Missense_Mutation p.Q1185H 0.40 tolerated(0.16) benign(0.048) TCGA-33-4566-01 2 201515773 201515773 A T AOX1 Missense_Mutation p.Q975L 0.21 deleterious(0.01) benign(0.152) TCGA-33-4566-01 2 202074132 202074132 A T CASP10 Missense_Mutation p.Q421L 0.38 tolerated(0.81) benign(0) TCGA-33-4566-01 2 20508288 20508288 G A PUM2 Silent p.P192P 0.25 TCGA-33-4566-01 2 207172542 207172542 G T ZDBF2 Missense_Mutation p.W1097L 0.26 tolerated(0.05) benign(0.307) TCGA-33-4566-01 2 207625738 207625738 C A MDH1B Splice_Site p.X8_splice 0.44 TCGA-33-4566-01 2 212248595 212248595 G T ERBB4 Missense_Mutation p.N1224K 0.18 tolerated(0.76) benign(0.001) TCGA-33-4566-01 2 21229324 21229324 G T APOB Silent p.T3472T 0.28 TCGA-33-4566-01 2 212295689 212295689 T A ERBB4 Missense_Mutation p.Y875F 0.19 deleterious(0) possibly_damaging(0.583) TCGA-33-4566-01 2 21233860 21233860 G T APOB Silent p.I1960I 0.43 TCGA-33-4566-01 2 215884167 215884167 A T ABCA12 Missense_Mutation p.L517Q 0.18 tolerated(0.47) benign(0.061) TCGA-33-4566-01 2 218925643 218925643 C A CXCR2P1 RNA 0.42 TCGA-33-4566-01 2 219694976 219694976 C A PRKAG3 Missense_Mutation p.D120Y 0.27 deleterious_low_confidence(0) benign(0.219) TCGA-33-4566-01 2 219870807 219870807 C A CCDC108 Missense_Mutation p.A1620S 0.11 tolerated(1) benign(0.037) TCGA-33-4566-01 2 220161834 220161834 C A PTPRN Silent p.L703L 0.44 TCGA-33-4566-01 2 220285300 220285300 C A DES Silent p.A273A 0.52 TCGA-33-4566-01 2 220357413 220357413 C A SPEG Silent p.R3237R 0.25 TCGA-33-4566-01 2 220422698 220422698 C A OBSL1 Missense_Mutation p.V1213L 0.24 tolerated(1) benign(0.131) TCGA-33-4566-01 2 220494051 220494051 G C SLC4A3 Missense_Mutation p.D135H 0.50 tolerated_low_confidence(0.08) benign(0.001) TCGA-33-4566-01 2 220500081 220500081 C T SLC4A3 Missense_Mutation p.P639L 0.30 deleterious(0) probably_damaging(0.999) TCGA-33-4566-01 2 228860331 228860331 G T SPHKAP Missense_Mutation p.P1510T 0.21 tolerated(0.59) benign(0.284) TCGA-33-4566-01 2 228882714 228882714 G T SPHKAP Silent p.S952S 0.23 TCGA-33-4566-01 2 228883481 228883481 G A SPHKAP Missense_Mutation p.H697Y 0.19 tolerated(0.4) benign(0.284) TCGA-33-4566-01 2 230223351 230223351 G A DNER Missense_Mutation p.R707W 0.19 deleterious(0) probably_damaging(0.995) TCGA-33-4566-01 2 233323623 233323623 G T ALPI Nonsense_Mutation p.G452* 0.36 TCGA-33-4566-01 2 233396137 233396137 T A CHRND Missense_Mutation p.L299Q 0.34 deleterious(0) probably_damaging(0.996) TCGA-33-4566-01 2 237272468 237272468 G T IQCA1 Nonsense_Mutation p.Y608* 0.51 TCGA-33-4566-01 2 238233378 238233378 C A COL6A3 3'UTR 0.22 TCGA-33-4566-01 2 238243328 238243328 G A COL6A3 Missense_Mutation p.A3057V 0.30 unknown(0) TCGA-33-4566-01 2 239990258 239990258 C A HDAC4 Silent p.V927V 0.35 TCGA-33-4566-01 2 241468696 241468696 C A ANKMY1 Missense_Mutation p.Q148H 0.24 deleterious(0.02) benign(0.03) TCGA-33-4566-01 2 241528825 241528825 G C CAPN10 Silent p.L69L 0.41 TCGA-33-4566-01 2 242066238 242066238 C G PASK Missense_Mutation p.D698H 0.38 tolerated(0.15) probably_damaging(0.959) TCGA-33-4566-01 2 26699040 26699040 C A OTOF Missense_Mutation p.G941V 0.22 tolerated(0.18) probably_damaging(0.963) TCGA-33-4566-01 2 26712555 26712555 G C OTOF Missense_Mutation p.I317M 0.44 deleterious(0) possibly_damaging(0.885) TCGA-33-4566-01 2 27424659 27424659 C A SLC5A6 Silent p.G473G 0.46 TCGA-33-4566-01 2 27556624 27556624 C A GTF3C2 Missense_Mutation p.G544W 0.21 deleterious(0) probably_damaging(0.998) TCGA-33-4566-01 2 27700124 27700124 C A IFT172 Missense_Mutation p.G429C 0.19 deleterious(0.04) probably_damaging(0.925) TCGA-33-4566-01 2 27800909 27800909 G C C2orf16 Missense_Mutation p.R490S 0.31 tolerated(0.1) benign(0.002) TCGA-33-4566-01 2 31483649 31483649 C A EHD3 Missense_Mutation p.S259Y 0.21 deleterious(0) possibly_damaging(0.615) TCGA-33-4566-01 2 33498804 33498804 G T LTBP1 Missense_Mutation p.C900F 0.11 deleterious(0) probably_damaging(0.986) TCGA-33-4566-01 2 37215788 37215788 C A HEATR5B Splice_Site p.X1971_splice 0.48 TCGA-33-4566-01 2 38537548 38537549 CT A ATL2 Frame_Shift_Del p.K282Ifs*32 0.25 TCGA-33-4566-01 2 39251238 39251238 C A SOS1 Missense_Mutation p.C372F 0.15 tolerated(0.06) possibly_damaging(0.557) TCGA-33-4566-01 2 40401970 40401970 A G SLC8A1 Missense_Mutation p.I650T 0.17 tolerated(0.44) benign(0.001) TCGA-33-4566-01 2 43804212 43804212 C A THADA Missense_Mutation p.G329V 0.41 deleterious(0.04) benign(0.053) TCGA-33-4566-01 2 43937155 43937155 G A PLEKHH2 Missense_Mutation p.E665K 0.15 deleterious(0) benign(0.394) TCGA-33-4566-01 2 47389653 47389672 CTTACCATCAGCATCTACTT - CALM2 Splice_Site p.X55_splice 0.11 TCGA-33-4566-01 2 50724472 50724472 C G NRXN1 Missense_Mutation p.G1000R 0.41 deleterious(0) probably_damaging(0.973) TCGA-33-4566-01 2 64083466 64083466 G T UGP2 Missense_Mutation p.G16C 0.26 deleterious(0.01) benign(0.401) TCGA-33-4566-01 2 69771660 69771660 T A AAK1 Missense_Mutation p.H100L 0.33 deleterious(0) unknown(0) TCGA-33-4566-01 2 70187792 70187792 G T ASPRV1 Missense_Mutation p.H343Q 0.25 deleterious_low_confidence(0.03) benign(0.05) TCGA-33-4566-01 2 74372362 74372362 T - BOLA3 Frame_Shift_Del p.E42Kfs*9 0.35 TCGA-33-4566-01 2 79363125 79363126 - T REG1P RNA 0.21 TCGA-33-4566-01 2 79878772 79878772 A T CTNNA2 Silent p.P30P 0.39 TCGA-33-4566-01 2 85875944 85875944 G T USP39 3'UTR 0.19 TCGA-33-4566-01 2 86297336 86297336 G A POLR1A Silent p.H557H 0.47 TCGA-33-4566-01 2 88879056 88879056 C A EIF2AK3 Missense_Mutation p.K622N 0.15 deleterious(0) probably_damaging(0.992) TCGA-33-4566-01 2 90198920 90198920 C A IGKV1D-12 Silent p.T27T 0.41 TCGA-33-4566-01 2 90248953 90248953 C A IGKV1D-43 Missense_Mutation p.L12I 0.40 tolerated(0.07) benign(0.397) TCGA-33-4566-01 2 96780674 96780674 G C ADRA2B Missense_Mutation p.F405L 0.17 deleterious(0) probably_damaging(0.98) TCGA-33-4566-01 2 96781401 96781401 T A ADRA2B Missense_Mutation p.Q163L 0.21 tolerated(0.07) benign(0.086) TCGA-33-4566-01 2 98377352 98377352 C A TMEM131 Nonsense_Mutation p.G1639* 0.17 TCGA-33-4566-01 2 98409345 98409345 T A TMEM131 Silent p.P1216P 0.33 TCGA-33-4566-01 3 107097325 107097325 T G CCDC54 Silent p.T297T 0.61 TCGA-33-4566-01 3 107524370 107524370 G T BBX 3'UTR 0.61 TCGA-33-4566-01 3 111426998 111426998 T C PLCXD2 Missense_Mutation p.F130S 0.69 deleterious(0) probably_damaging(0.999) TCGA-33-4566-01 3 112546014 112546014 C A CD200R1L Missense_Mutation p.A169S 0.63 deleterious(0) probably_damaging(0.998) TCGA-33-4566-01 3 112738520 112738520 C T C3orf17 5'UTR 0.53 TCGA-33-4566-01 3 113673034 113673034 G T ZDHHC23 Missense_Mutation p.G217W 0.57 deleterious(0.01) possibly_damaging(0.895) TCGA-33-4566-01 3 116163925 116163925 C A LSAMP 5'UTR 0.46 TCGA-33-4566-01 3 120941900 120941900 G T STXBP5L Missense_Mutation p.R336I 0.56 deleterious(0.02) benign(0.168) TCGA-33-4566-01 3 123452850 123452850 C A MYLK Silent p.T331T 0.66 TCGA-33-4566-01 3 124201667 124201667 C A KALRN Silent p.R1400R 0.57 TCGA-33-4566-01 3 125266342 125266342 C A OSBPL11 Silent p.L583L 0.64 TCGA-33-4566-01 3 126916273 126916273 C A C3orf56 3'UTR 0.62 TCGA-33-4566-01 3 12867024 12867024 G A CAND2 Silent p.L1032L 0.69 TCGA-33-4566-01 3 140282882 140282882 G T CLSTN2 Silent p.R854R 0.63 TCGA-33-4566-01 3 146323087 146323087 C A PLSCR5 5'UTR 0.37 TCGA-33-4566-01 3 147128169 147128169 C T ZIC1 Silent p.S90S 0.14 TCGA-33-4566-01 3 148459207 148459207 G T AGTR1 Missense_Mutation p.A129S 0.48 deleterious(0.01) probably_damaging(0.996) TCGA-33-4566-01 3 148552407 148552407 C G CPB1 Nonsense_Mutation p.Y90* 0.13 TCGA-33-4566-01 3 14964614 14964614 C A FGD5 Missense_Mutation p.A1290D 0.50 deleterious(0.01) probably_damaging(0.998) TCGA-33-4566-01 3 150931184 150931184 A T P2RY14 Nonsense_Mutation p.C307* 0.47 TCGA-33-4566-01 3 151463429 151463429 C G AADACL2 Missense_Mutation p.D188E 0.11 deleterious(0.03) possibly_damaging(0.776) TCGA-33-4566-01 3 155199359 155199359 T C PLCH1 Missense_Mutation p.S1494G 0.13 deleterious(0) probably_damaging(0.998) TCGA-33-4566-01 3 158519984 158519984 G C MFSD1 Missense_Mutation p.G64R 0.61 tolerated(0.26) probably_damaging(0.995) TCGA-33-4566-01 3 158980335 158980335 A T IQCJ-SCHIP1 Splice_Site p.X52_splice 0.45 TCGA-33-4566-01 3 161147365 161147365 C G RP11-3P17.5 RNA 0.62 TCGA-33-4566-01 3 164777795 164777795 C A SI Missense_Mutation p.M347I 0.57 tolerated(0.14) probably_damaging(0.983) TCGA-33-4566-01 3 167750452 167750452 C A GOLIM4 Missense_Mutation p.E344D 0.57 tolerated(0.08) possibly_damaging(0.833) TCGA-33-4566-01 3 170802911 170802911 G A TNIK Silent p.A998A 0.16 TCGA-33-4566-01 3 172835288 172835288 C A SPATA16 Missense_Mutation p.E78D 0.63 tolerated(1) benign(0.388) TCGA-33-4566-01 3 180702357 180702357 C T DNAJC19 3'UTR 0.67 TCGA-33-4566-01 3 184295691 184295691 G - EPHB3 Frame_Shift_Del p.A550Pfs*56 0.50 TCGA-33-4566-01 3 186954175 186954175 G T MASP1 Missense_Mutation p.A495E 0.60 deleterious(0) probably_damaging(0.997) TCGA-33-4566-01 3 190366198 190366198 G C IL1RAP Intron 0.66 TCGA-33-4566-01 3 28454649 28454649 G T ZCWPW2 Missense_Mutation p.W30C 0.48 deleterious(0) probably_damaging(1) TCGA-33-4566-01 3 2908472 2908472 C A CNTN4 Missense_Mutation p.S164Y 0.52 tolerated(0.63) possibly_damaging(0.796) TCGA-33-4566-01 3 30032588 30032588 A T RBMS3 Missense_Mutation p.T399S 0.58 tolerated(0.41) benign(0.024) TCGA-33-4566-01 3 33877570 33877570 G T PDCD6IP Missense_Mutation p.R295L 0.50 deleterious(0) benign(0.294) TCGA-33-4566-01 3 38271889 38271889 A T OXSR1 Nonsense_Mutation p.R307* 0.61 TCGA-33-4566-01 3 38603979 38603979 C A SCN5A Missense_Mutation p.G1297V 0.58 deleterious(0) probably_damaging(1) TCGA-33-4566-01 3 38616872 38616872 C T SCN5A Silent p.L1194L 0.69 TCGA-33-4566-01 3 38639229 38639229 G A SCN5A Silent p.V751V 0.53 TCGA-33-4566-01 3 38888717 38888717 T A SCN11A Missense_Mutation p.E1615V 0.51 deleterious(0.01) benign(0.309) TCGA-33-4566-01 3 39167842 39167842 G C TTC21A Missense_Mutation p.D503H 0.54 tolerated(0.06) possibly_damaging(0.752) TCGA-33-4566-01 3 45458977 45458977 A G LARS2 Missense_Mutation p.I123V 0.61 deleterious(0) benign(0.052) TCGA-33-4566-01 3 47742767 47742767 C A SMARCC1 Splice_Site p.X389_splice 0.53 TCGA-33-4566-01 3 51978871 51978871 C T PARP3 Silent p.I200I 0.53 TCGA-33-4566-01 3 52356484 52356484 A G DNAH1 Missense_Mutation p.Y9C 0.45 benign(0) TCGA-33-4566-01 3 52544007 52544007 G A STAB1 Silent p.G823G 0.55 TCGA-33-4566-01 3 52855104 52855104 C T ITIH4 Missense_Mutation p.E528K 0.58 tolerated(0.06) benign(0.045) TCGA-33-4566-01 3 58131689 58131689 A T FLNB Missense_Mutation p.S1854C 0.53 deleterious(0.02) possibly_damaging(0.828) TCGA-33-4566-01 3 64138884 64138884 T A PRICKLE2 Missense_Mutation p.Y254F 0.50 deleterious(0.02) benign(0.009) TCGA-33-4566-01 3 7456800 7456800 A T GRM7 Missense_Mutation p.K375M 0.56 deleterious(0.01) probably_damaging(0.946) TCGA-33-4566-01 3 87027808 87027808 A G VGLL3 Missense_Mutation p.F91L 0.56 deleterious(0.05) probably_damaging(0.999) TCGA-33-4566-01 3 87027868 87027868 C T VGLL3 Missense_Mutation p.E71K 0.56 tolerated(0.71) benign(0.194) TCGA-33-4566-01 3 97677934 97677934 C T MINA Silent p.E214E 0.62 TCGA-33-4566-01 3 98109766 98109766 T A OR5K3 Missense_Mutation p.F86Y 0.60 deleterious(0.02) benign(0.031) TCGA-33-4566-01 4 100205627 100205627 G T ADH1A Missense_Mutation p.P166T 0.09 deleterious(0.01) possibly_damaging(0.757) TCGA-33-4566-01 4 100443678 100443678 G T C4orf17 Missense_Mutation p.C50F 0.37 deleterious(0) probably_damaging(1) TCGA-33-4566-01 4 100518257 100518257 C T MTTP Silent p.L315L 0.30 TCGA-33-4566-01 4 100738012 100738012 G C DAPP1 5'UTR 0.45 TCGA-33-4566-01 4 10076976 10076976 C A WDR1 3'UTR 0.11 TCGA-33-4566-01 4 1018329 1018329 G T FGFRL1 Missense_Mutation p.G317C 0.06 deleterious(0) probably_damaging(1) TCGA-33-4566-01 4 1018425 1018425 C T FGFRL1 Missense_Mutation p.R349C 0.13 deleterious(0) probably_damaging(0.999) TCGA-33-4566-01 4 104064497 104064497 C G CENPE Missense_Mutation p.D1738H 0.36 possibly_damaging(0.687) TCGA-33-4566-01 4 109670424 109670424 G C ETNPPL Missense_Mutation p.F299L 0.12 tolerated(0.05) probably_damaging(1) TCGA-33-4566-01 4 110221759 110221759 G T COL25A1 Nonsense_Mutation p.S116* 0.32 TCGA-33-4566-01 4 110402874 110402874 G T SEC24B Missense_Mutation p.A368S 0.11 tolerated_low_confidence(0.22) possibly_damaging(0.495) TCGA-33-4566-01 4 111397698 111397698 G T ENPEP Missense_Mutation p.C43F 0.12 tolerated(0.08) possibly_damaging(0.45) TCGA-33-4566-01 4 119609096 119609096 G T METTL14 Missense_Mutation p.D29Y 0.21 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-33-4566-01 4 125592529 125592529 C G ANKRD50 Missense_Mutation p.V635L 0.11 deleterious(0.01) benign(0.115) TCGA-33-4566-01 4 129127647 129127647 A G LARP1B Missense_Mutation p.I792V 0.12 tolerated(0.09) possibly_damaging(0.474) TCGA-33-4566-01 4 13338343 13338343 C A HSP90AB2P RNA 0.55 TCGA-33-4566-01 4 141832266 141832266 G T RNF150 Intron 0.19 TCGA-33-4566-01 4 143029265 143029265 C A INPP4B Missense_Mutation p.M785I 0.11 tolerated(0.13) benign(0.002) TCGA-33-4566-01 4 155158210 155158210 G T DCHS2 Missense_Mutation p.L2077I 0.32 tolerated(0.31) benign(0.057) TCGA-33-4566-01 4 15995679 15995679 A G PROM1 Silent p.N566N 0.33 TCGA-33-4566-01 4 17528607 17528607 G T CLRN2 Missense_Mutation p.A201S 0.32 deleterious(0.02) benign(0.109) TCGA-33-4566-01 4 177650717 177650717 C T VEGFC Missense_Mutation p.A111T 0.29 deleterious(0) probably_damaging(0.999) TCGA-33-4566-01 4 20618799 20618799 A T SLIT2 Missense_Mutation p.N1372Y 0.26 tolerated(0.26) possibly_damaging(0.878) TCGA-33-4566-01 4 20620619 20620619 G C SLIT2 Missense_Mutation p.R1526T 0.29 tolerated(0.29) benign(0.015) TCGA-33-4566-01 4 23814395 23814395 C A PPARGC1A Missense_Mutation p.R665M 0.20 tolerated(0.18) unknown(0) TCGA-33-4566-01 4 39868592 39868592 C A PDS5A Missense_Mutation p.R844M 0.23 deleterious(0) probably_damaging(0.993) TCGA-33-4566-01 4 40121773 40121773 C A N4BP2 Missense_Mutation p.P681Q 0.29 tolerated(0.47) possibly_damaging(0.577) TCGA-33-4566-01 4 40245257 40245257 C A RHOH Missense_Mutation p.S84Y 0.22 deleterious(0) probably_damaging(0.996) TCGA-33-4566-01 4 437772 437772 C A ZNF721 Nonsense_Mutation p.E162* 0.29 TCGA-33-4566-01 4 4419021 4419021 C A NSG1 Silent p.A139A 0.08 TCGA-33-4566-01 4 44450284 44450284 C A KCTD8 Missense_Mutation p.R86L 0.31 tolerated_low_confidence(0.3) benign(0.082) TCGA-33-4566-01 4 44626800 44626800 C A YIPF7 Splice_Site p.X167_splice 0.24 TCGA-33-4566-01 4 54248489 54248489 G T FIP1L1 Missense_Mutation p.G72V 0.33 deleterious(0.01) probably_damaging(1) TCGA-33-4566-01 4 5564592 5564592 C T EVC2 Missense_Mutation p.A1304T 0.32 deleterious(0.01) possibly_damaging(0.804) TCGA-33-4566-01 4 55974023 55974023 A T KDR Silent p.P431P 0.05 TCGA-33-4566-01 4 57181465 57181465 G T KIAA1211 Silent p.T599T 0.13 TCGA-33-4566-01 4 5800437 5800437 A C EVC Missense_Mutation p.E741A 0.21 tolerated(0.08) possibly_damaging(0.835) TCGA-33-4566-01 4 62845285 62845285 G T LPHN3 Missense_Mutation p.S869I 0.06 tolerated(0.15) benign(0.067) TCGA-33-4566-01 4 66213856 66213856 G T EPHA5 Silent p.A858A 0.33 TCGA-33-4566-01 4 69403350 69403350 C T UGT2B17 Missense_Mutation p.R529K 0.23 tolerated(0.46) benign(0.068) TCGA-33-4566-01 4 70079792 70079792 C G UGT2B11 Missense_Mutation p.V217L 0.18 tolerated(0.42) benign(0.019) TCGA-33-4566-01 4 72897664 72897664 G A NPFFR2 Missense_Mutation p.E16K 0.33 deleterious_low_confidence(0) benign(0) TCGA-33-4566-01 4 74010501 74010501 C G ANKRD17 Missense_Mutation p.A640P 0.12 probably_damaging(1) TCGA-33-4566-01 4 74310718 74310718 C A AFP Missense_Mutation p.T241N 0.08 deleterious(0.01) possibly_damaging(0.649) TCGA-33-4566-01 4 74447946 74447946 C T RASSF6 Missense_Mutation p.R242K 0.07 tolerated(0.29) benign(0.02) TCGA-33-4566-01 4 76794303 76794303 A T PPEF2 Missense_Mutation p.Y495N 0.34 deleterious(0) probably_damaging(0.982) TCGA-33-4566-01 4 79393426 79393426 G T FRAS1 Missense_Mutation p.K2488N 0.21 benign(0.04) TCGA-33-4566-01 4 81207575 81207575 C A FGF5 Silent p.R186R 0.28 TCGA-33-4566-01 4 81967120 81967120 A G BMP3 Missense_Mutation p.H182R 0.06 tolerated(0.42) benign(0.02) TCGA-33-4566-01 4 8229084 8229084 C T SH3TC1 Missense_Mutation p.L555F 0.21 tolerated(0.07) possibly_damaging(0.449) TCGA-33-4566-01 4 83375922 83375922 G T ENOPH1 Missense_Mutation p.G146V 0.29 deleterious(0) possibly_damaging(0.86) TCGA-33-4566-01 4 94006212 94006212 C A GRID2 Missense_Mutation p.S104Y 0.22 deleterious(0.01) probably_damaging(0.968) TCGA-33-4566-01 4 9452106 9452106 G A DEFB131 Missense_Mutation p.D27N 0.08 tolerated(0.31) possibly_damaging(0.539) TCGA-33-4566-01 4 94693642 94693642 C A GRID2 Missense_Mutation p.S1006Y 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-33-4566-01 4 94693643 94693643 C A GRID2 Silent p.S1006S 0.25 TCGA-33-4566-01 5 101748803 101748803 C G SLCO6A1 Missense_Mutation p.C506S 0.48 deleterious(0) probably_damaging(0.997) TCGA-33-4566-01 5 101755672 101755672 C A SLCO6A1 Missense_Mutation p.V444F 0.39 deleterious(0.01) probably_damaging(0.933) TCGA-33-4566-01 5 102423699 102423699 G A GIN1 Missense_Mutation p.T491M 0.25 tolerated_low_confidence(0.06) benign(0.086) TCGA-33-4566-01 5 10405729 10405729 A T MARCH6 Silent p.P464P 0.32 TCGA-33-4566-01 5 10464985 10464985 G T ROPN1L Missense_Mutation p.G207C 0.23 deleterious(0.04) probably_damaging(0.91) TCGA-33-4566-01 5 10464986 10464986 G T ROPN1L Missense_Mutation p.G207V 0.22 tolerated(0.2) possibly_damaging(0.65) TCGA-33-4566-01 5 110835665 110835665 C T STARD4 Silent p.G179G 0.32 TCGA-33-4566-01 5 118729115 118729115 G C TNFAIP8 3'UTR 0.62 TCGA-33-4566-01 5 1201812 1201812 C T SLC6A19 Missense_Mutation p.P16L 0.16 tolerated(0.21) benign(0.019) TCGA-33-4566-01 5 122726941 122726941 G A CEP120 Missense_Mutation p.H301Y 0.58 deleterious(0.04) benign(0.279) TCGA-33-4566-01 5 127671679 127671679 C A FBN2 Splice_Site p.X1242_splice 0.47 TCGA-33-4566-01 5 128302173 128302173 G T SLC27A6 Nonsense_Mutation p.E115* 0.44 TCGA-33-4566-01 5 134364975 134364975 G T PITX1 Missense_Mutation p.R147S 0.47 deleterious(0) possibly_damaging(0.735) TCGA-33-4566-01 5 137542257 137542257 C A CDC23 Silent p.L117L 0.58 TCGA-33-4566-01 5 13770872 13770872 C A DNAH5 Silent p.R3197R 0.45 TCGA-33-4566-01 5 139908801 139908802 - G ANKHD1 Frame_Shift_Ins p.P2091Afs*9 0.39 TCGA-33-4566-01 5 140166549 140166549 C T PCDHA1 Missense_Mutation p.T225I 0.53 deleterious_low_confidence(0.01) benign(0.239) TCGA-33-4566-01 5 140166551 140166551 G A PCDHA1 Missense_Mutation p.V226I 0.55 tolerated_low_confidence(0.05) benign(0.158) TCGA-33-4566-01 5 140167336 140167336 C A PCDHA1 Missense_Mutation p.N487K 0.47 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-33-4566-01 5 140175926 140175926 G T PCDHA2 Missense_Mutation p.E459D 0.53 deleterious_low_confidence(0.02) benign(0.041) TCGA-33-4566-01 5 140188024 140188024 G T PCDHA4 Missense_Mutation p.V418L 0.46 tolerated_low_confidence(0.09) benign(0.047) TCGA-33-4566-01 5 140202727 140202727 A G PCDHA5 Missense_Mutation p.Q456R 0.48 deleterious_low_confidence(0) benign(0.199) TCGA-33-4566-01 5 140214357 140214357 C A PCDHA7 Missense_Mutation p.P130H 0.49 deleterious_low_confidence(0) benign(0.106) TCGA-33-4566-01 5 140358567 140358567 G T PCDHAC1 Missense_Mutation p.A823S 0.51 tolerated(0.13) benign(0.265) TCGA-33-4566-01 5 140474267 140474267 G T PCDHB2 5'UTR 0.72 TCGA-33-4566-01 5 140594417 140594417 C T PCDHB13 Missense_Mutation p.P241L 0.45 deleterious_low_confidence(0) probably_damaging(0.944) TCGA-33-4566-01 5 140720414 140720414 G T PCDHGA2 Missense_Mutation p.V626L 0.53 deleterious_low_confidence(0.01) benign(0.327) TCGA-33-4566-01 5 140731432 140731432 C G PCDHGB1 Silent p.S535S 0.45 TCGA-33-4566-01 5 140774289 140774289 G C PCDHGA8 Missense_Mutation p.A637P 0.49 deleterious_low_confidence(0.01) possibly_damaging(0.638) TCGA-33-4566-01 5 140799700 140799700 G T PCDHGB7 Silent p.G758G 0.40 TCGA-33-4566-01 5 143853639 143853639 C T KCTD16 Missense_Mutation p.P417S 0.46 tolerated(0.78) benign(0.002) TCGA-33-4566-01 5 149245768 149245768 C A PDE6A Missense_Mutation p.G775C 0.48 deleterious(0) probably_damaging(1) TCGA-33-4566-01 5 149502665 149502665 C A PDGFRB Missense_Mutation p.R708L 0.49 tolerated(0.38) benign(0.014) TCGA-33-4566-01 5 149677244 149677244 C G ARSI Missense_Mutation p.V415L 0.35 deleterious(0.02) possibly_damaging(0.746) TCGA-33-4566-01 5 15500645 15500645 C G FBXL7 5'UTR 0.37 TCGA-33-4566-01 5 15500690 15500690 C A FBXL7 5'UTR 0.21 TCGA-33-4566-01 5 156589937 156589937 G C FAM71B Missense_Mutation p.R447G 0.55 deleterious(0.02) benign(0.247) TCGA-33-4566-01 5 158621832 158621832 C G RNF145 Missense_Mutation p.G92A 0.58 tolerated(0.22) possibly_damaging(0.858) TCGA-33-4566-01 5 15928149 15928149 C A FBXL7 Missense_Mutation p.P93Q 0.25 tolerated(0.52) benign(0.132) TCGA-33-4566-01 5 16067764 16067764 C G MARCH11 Missense_Mutation p.R342T 0.17 deleterious(0.03) probably_damaging(0.968) TCGA-33-4566-01 5 161119134 161119134 G - GABRA6 Frame_Shift_Del p.A339Hfs*9 0.35 TCGA-33-4566-01 5 16465451 16465451 C A ZNF622 Missense_Mutation p.M108I 0.35 tolerated(0.39) benign(0) TCGA-33-4566-01 5 170222299 170222299 C A GABRP Missense_Mutation p.R110S 0.55 deleterious(0.03) benign(0.135) TCGA-33-4566-01 5 171533644 171533644 C - STK10 Frame_Shift_Del p.L257Cfs*9 0.54 TCGA-33-4566-01 5 175111071 175111071 G C HRH2 Missense_Mutation p.A279P 0.59 deleterious(0.02) probably_damaging(0.994) TCGA-33-4566-01 5 175111388 175111388 C A HRH2 Intron 0.42 TCGA-33-4566-01 5 175533576 175533576 C A FAM153B Missense_Mutation p.P205Q 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.904) TCGA-33-4566-01 5 176893795 176893795 C A DBN1 Missense_Mutation p.R252L 0.49 deleterious(0.05) probably_damaging(0.995) TCGA-33-4566-01 5 177419911 177419911 T A PROP1 Silent p.P160P 0.45 TCGA-33-4566-01 5 178554976 178554976 G C ADAMTS2 Silent p.S867S 0.47 TCGA-33-4566-01 5 180661814 180661814 G - TRIM41 3'UTR 0.46 TCGA-33-4566-01 5 19571932 19571932 A T CDH18 Missense_Mutation p.Y337N 0.21 deleterious(0) probably_damaging(0.953) TCGA-33-4566-01 5 19721511 19721511 C A CDH18 Silent p.R196R 0.24 TCGA-33-4566-01 5 23509607 23509607 T A PRDM9 Missense_Mutation p.I33K 0.29 tolerated_low_confidence(0.09) benign(0.082) TCGA-33-4566-01 5 23522877 23522877 G T PRDM9 Missense_Mutation p.Q255H 0.14 deleterious(0.01) benign(0.08) TCGA-33-4566-01 5 23526523 23526523 A T PRDM9 Silent p.P442P 0.30 TCGA-33-4566-01 5 32010568 32010568 A T PDZD2 Missense_Mutation p.S463C 0.29 deleterious(0.04) possibly_damaging(0.471) TCGA-33-4566-01 5 32010569 32010569 G A PDZD2 Missense_Mutation p.S463N 0.29 tolerated(0.28) benign(0.043) TCGA-33-4566-01 5 32088501 32088501 C T PDZD2 Silent p.A1649A 0.03 TCGA-33-4566-01 5 32774923 32774923 A G NPR3 Missense_Mutation p.Q390R 0.33 tolerated(0.52) benign(0.145) TCGA-33-4566-01 5 33596054 33596054 T - ADAMTS12 Frame_Shift_Del p.K880Rfs*51 0.30 TCGA-33-4566-01 5 33624406 33624406 G A ADAMTS12 Silent p.C691C 0.29 TCGA-33-4566-01 5 33649685 33649685 G A ADAMTS12 Silent p.S436S 0.36 TCGA-33-4566-01 5 33881520 33881520 G T ADAMTS12 Missense_Mutation p.H65N 0.32 tolerated(0.29) benign(0.077) TCGA-33-4566-01 5 344045 344045 G T AHRR Missense_Mutation p.A14S 0.39 deleterious(0.01) probably_damaging(1) TCGA-33-4566-01 5 35692818 35692818 G A SPEF2 Missense_Mutation p.E631K 0.13 tolerated(0.38) benign(0.023) TCGA-33-4566-01 5 35871231 35871231 T A IL7R Missense_Mutation p.N151K 0.32 tolerated(0.09) possibly_damaging(0.594) TCGA-33-4566-01 5 37815898 37815898 G A GDNF Missense_Mutation p.S181F 0.31 deleterious(0) possibly_damaging(0.847) TCGA-33-4566-01 5 41019108 41019108 A T MROH2B Silent p.P818P 0.08 TCGA-33-4566-01 5 41160347 41160347 A G C6 Silent p.P527P 0.31 TCGA-33-4566-01 5 41160349 41160349 G T C6 Missense_Mutation p.P527T 0.31 deleterious(0) possibly_damaging(0.842) TCGA-33-4566-01 5 41186221 41186221 G T C6 Missense_Mutation p.T226K 0.40 deleterious(0.04) benign(0.118) TCGA-33-4566-01 5 42808330 42808330 C A SEPP1 Missense_Mutation p.M42I 0.12 deleterious(0.03) benign(0.075) TCGA-33-4566-01 5 43675646 43675646 G T NNT Nonsense_Mutation p.G890* 0.20 TCGA-33-4566-01 5 45262788 45262788 G T HCN1 Silent p.I636I 0.26 TCGA-33-4566-01 5 52235523 52235523 T C ITGA1 Splice_Site p.X1060_splice 0.53 TCGA-33-4566-01 5 5242188 5242188 C A ADAMTS16 Missense_Mutation p.P849Q 0.25 tolerated(0.08) possibly_damaging(0.87) TCGA-33-4566-01 5 54456978 54456978 G C GPX8 Missense_Mutation p.E121Q 0.49 deleterious(0.05) possibly_damaging(0.851) TCGA-33-4566-01 5 56777566 56777566 G T ACTBL2 Silent p.P323P 0.52 TCGA-33-4566-01 5 56778020 56778020 A T ACTBL2 Missense_Mutation p.L172Q 0.48 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-33-4566-01 5 63256357 63256357 G T HTR1A Missense_Mutation p.P397H 0.45 deleterious(0) probably_damaging(1) TCGA-33-4566-01 5 63256358 63256358 G T HTR1A Missense_Mutation p.P397T 0.44 deleterious(0) probably_damaging(1) TCGA-33-4566-01 5 70308644 70308644 C A NAIP Missense_Mutation p.Q33H 0.31 deleterious(0.04) benign(0.008) TCGA-33-4566-01 5 71752345 71752345 G T ZNF366 Silent p.I470I 0.50 TCGA-33-4566-01 5 73136487 73136487 G T ARHGEF28 Missense_Mutation p.Q443H 0.50 tolerated(0.39) benign(0.281) TCGA-33-4566-01 5 74706902 74706902 C A COL4A3BP Missense_Mutation p.E416D 0.48 tolerated(0.08) possibly_damaging(0.901) TCGA-33-4566-01 5 76707522 76707522 G A PDE8B Missense_Mutation p.G518R 0.57 deleterious(0.04) probably_damaging(0.95) TCGA-33-4566-01 5 7707951 7707951 G T ADCY2 Missense_Mutation p.K467N 0.35 tolerated(0.08) benign(0.007) TCGA-33-4566-01 5 7709399 7709399 C A ADCY2 Missense_Mutation p.R493S 0.25 deleterious(0.01) benign(0.072) TCGA-33-4566-01 5 7766797 7766797 C T ADCY2 Intron 0.23 TCGA-33-4566-01 5 7773087 7773087 G T ADCY2 Missense_Mutation p.V753L 0.37 tolerated(0.17) benign(0.025) TCGA-33-4566-01 5 78379182 78379182 C A BHMT2 Missense_Mutation p.P256T 0.49 tolerated(0.08) probably_damaging(0.962) TCGA-33-4566-01 5 7870910 7870910 G T MTRR Missense_Mutation p.M28I 0.27 tolerated(0.08) benign(0.445) TCGA-33-4566-01 5 80388701 80388701 G T RASGRF2 Missense_Mutation p.G491V 0.53 tolerated(0.06) possibly_damaging(0.493) TCGA-33-4566-01 5 81608492 81608492 A G ATP6AP1L Missense_Mutation p.E65G 0.49 deleterious(0) possibly_damaging(0.888) TCGA-33-4566-01 5 90025522 90025522 A T GPR98 Missense_Mutation p.Q3497L 0.38 benign(0.403) TCGA-33-4566-01 5 9052120 9052120 C A SEMA5A Missense_Mutation p.D904Y 0.28 tolerated(0.06) benign(0.398) TCGA-33-4566-01 5 9063065 9063065 A G SEMA5A Missense_Mutation p.Y818H 0.25 tolerated(0.53) benign(0.034) TCGA-33-4566-01 5 9237981 9237981 C A SEMA5A Nonsense_Mutation p.E98* 0.19 TCGA-33-4566-01 5 94022349 94022349 G C ANKRD32 Missense_Mutation p.E683Q 0.51 deleterious(0) probably_damaging(0.998) TCGA-33-4566-01 5 96064905 96064905 C T CAST Intron 0.39 TCGA-33-4566-01 6 106553194 106553194 G T PRDM1 Missense_Mutation p.G387C 0.50 tolerated(0.17) possibly_damaging(0.897) TCGA-33-4566-01 6 10749441 10749441 G T TMEM14B 5'UTR 0.60 TCGA-33-4566-01 6 111587213 111587213 G T KIAA1919 Missense_Mutation p.A150S 0.43 tolerated(0.31) benign(0.034) TCGA-33-4566-01 6 112041170 112041170 G C FYN Missense_Mutation p.R29G 0.49 tolerated_low_confidence(0.18) benign(0.144) TCGA-33-4566-01 6 112382385 112382385 G T WISP3 Missense_Mutation p.K98N 0.53 deleterious(0) possibly_damaging(0.897) TCGA-33-4566-01 6 112462013 112462013 C T LAMA4 Silent p.L975L 0.45 TCGA-33-4566-01 6 112486416 112486416 C G LAMA4 Silent p.A538A 0.50 TCGA-33-4566-01 6 117858346 117858346 A T DCBLD1 Splice_Site p.X240_splice 0.57 TCGA-33-4566-01 6 121769158 121769158 C A GJA1 3'UTR 0.53 TCGA-33-4566-01 6 129674447 129674447 A G LAMA2 Silent p.G1554G 0.51 TCGA-33-4566-01 6 132014756 132014756 G T ENPP3 Silent p.L468L 0.48 TCGA-33-4566-01 6 132021917 132021917 G T OR2A4 Missense_Mutation p.P209T 0.47 deleterious(0) probably_damaging(0.994) TCGA-33-4566-01 6 134583250 134583250 C - SGK1 Frame_Shift_Del p.D36Tfs*8 0.37 TCGA-33-4566-01 6 136599464 136599464 C G BCLAF1 Missense_Mutation p.E185D 0.17 tolerated_low_confidence(0.42) benign(0.388) TCGA-33-4566-01 6 136600970 136600970 C T BCLAF1 Missense_Mutation p.R12K 0.07 deleterious_low_confidence(0) unknown(0) TCGA-33-4566-01 6 1391171 1391171 A T FOXF2 Missense_Mutation p.H330L 0.62 deleterious(0.01) benign(0.011) TCGA-33-4566-01 6 142723805 142723805 G T GPR126 Missense_Mutation p.G598V 0.34 tolerated(0.05) possibly_damaging(0.453) TCGA-33-4566-01 6 143082622 143082622 C A HIVEP2 Missense_Mutation p.D1867Y 0.54 deleterious(0) possibly_damaging(0.905) TCGA-33-4566-01 6 146875734 146875734 G A RAB32 Missense_Mutation p.C224Y 0.26 deleterious(0) probably_damaging(0.948) TCGA-33-4566-01 6 147124676 147124676 G T ADGB Intron 0.48 TCGA-33-4566-01 6 151939118 151939118 G T CCDC170 Missense_Mutation p.G662C 0.36 deleterious(0) probably_damaging(0.998) TCGA-33-4566-01 6 158093997 158093997 A T ZDHHC14 Missense_Mutation p.Q437L 0.62 deleterious_low_confidence(0.02) benign(0.101) TCGA-33-4566-01 6 160494403 160494403 G T IGF2R Nonsense_Mutation p.E1617* 0.48 TCGA-33-4566-01 6 167184401 167184401 C A RPS6KA2 Intron 0.53 TCGA-33-4566-01 6 169648981 169648981 C A THBS2 Missense_Mutation p.G47V 0.55 deleterious(0) probably_damaging(1) TCGA-33-4566-01 6 17688803 17688803 C A NUP153 Missense_Mutation p.G53V 0.66 deleterious(0) possibly_damaging(0.703) TCGA-33-4566-01 6 25769301 25769301 C G SLC17A4 Silent p.A60A 0.61 TCGA-33-4566-01 6 26020907 26020907 C A HIST1H3A Missense_Mutation p.R64S 0.67 deleterious_low_confidence(0.02) benign(0.155) TCGA-33-4566-01 6 26225524 26225524 G T HIST1H3E Missense_Mutation p.A48S 0.73 deleterious_low_confidence(0.03) benign(0.075) TCGA-33-4566-01 6 26501971 26501971 G A BTN1A1 Missense_Mutation p.R78K 0.67 tolerated(1) benign(0.163) TCGA-33-4566-01 6 28056811 28056811 G A ZNF165 Missense_Mutation p.D341N 0.67 deleterious(0) benign(0.014) TCGA-33-4566-01 6 29054515 29054515 G T OR2B3 Missense_Mutation p.H171N 0.67 tolerated(0.36) benign(0.297) TCGA-33-4566-01 6 29080438 29080439 GG T OR2J3 Frame_Shift_Del p.A258Pfs*34 0.50 TCGA-33-4566-01 6 29574167 29574167 C A GABBR1 Splice_Site p.X771_splice 0.60 TCGA-33-4566-01 6 29627378 29627378 G C MOG Missense_Mutation p.G124A 0.80 tolerated(0.16) probably_damaging(0.936) TCGA-33-4566-01 6 29633931 29633931 C A MOG Missense_Mutation p.P147T 0.67 deleterious(0.03) possibly_damaging(0.846) TCGA-33-4566-01 6 30859793 30859793 G T DDR1 Missense_Mutation p.G227V 0.71 deleterious(0) probably_damaging(0.999) TCGA-33-4566-01 6 31749688 31749688 C A VARS Silent p.A761A 0.67 TCGA-33-4566-01 6 31760824 31760824 C A VARS Missense_Mutation p.G154V 0.64 deleterious_low_confidence(0) probably_damaging(1) TCGA-33-4566-01 6 32944196 32944196 G T BRD2 Silent p.P260P 0.64 TCGA-33-4566-01 6 35108619 35108619 G A TCP11 Missense_Mutation p.P23L 0.89 tolerated(0.32) benign(0.001) TCGA-33-4566-01 6 35923176 35923176 G T SLC26A8 Missense_Mutation p.P662Q 0.66 tolerated(0.09) possibly_damaging(0.596) TCGA-33-4566-01 6 36884283 36884283 C T C6orf89 Missense_Mutation p.P260L 0.63 tolerated(0.15) possibly_damaging(0.798) TCGA-33-4566-01 6 41177360 41177360 C A TREML3P RNA 0.69 TCGA-33-4566-01 6 41774093 41774093 C A USP49 Missense_Mutation p.R210L 0.70 deleterious(0.04) probably_damaging(0.999) TCGA-33-4566-01 6 49814308 49814308 G C CRISP1 Nonsense_Mutation p.Y120* 0.50 TCGA-33-4566-01 6 51771113 51771113 C A PKHD1 Silent p.V2236V 0.50 TCGA-33-4566-01 6 54806171 54806171 G T FAM83B Missense_Mutation p.C801F 0.42 deleterious(0.01) probably_damaging(0.986) TCGA-33-4566-01 6 70071070 70071070 G T BAI3 Missense_Mutation p.R1302I 0.52 tolerated(0.07) benign(0.133) TCGA-33-4566-01 6 70082331 70082331 G T BAI3 Nonsense_Mutation p.E1425* 0.44 TCGA-33-4566-01 6 76712652 76712652 G T IMPG1 Missense_Mutation p.A425E 0.49 tolerated(0.98) benign(0.004) TCGA-33-4566-01 6 80881107 80881107 G T BCKDHB Missense_Mutation p.A248S 0.42 deleterious(0.01) benign(0.002) TCGA-33-4566-01 6 84290221 84290221 G T SNAP91 Silent p.A749A 0.52 TCGA-33-4566-01 6 87795427 87795427 C - CGA 3'UTR 0.37 TCGA-33-4566-01 6 89967387 89967387 C T GABRR2 3'UTR 0.32 TCGA-33-4566-01 7 100033915 100033915 G T PPP1R35 Missense_Mutation p.P28H 0.35 deleterious(0) probably_damaging(0.998) TCGA-33-4566-01 7 100358100 100358100 G T ZAN Silent p.T1261T 0.26 TCGA-33-4566-01 7 100676657 100676657 G C MUC17 Missense_Mutation p.V654L 0.29 benign(0.235) TCGA-33-4566-01 7 100677014 100677014 G A MUC17 Missense_Mutation p.D773N 0.29 unknown(0) TCGA-33-4566-01 7 100815508 100815508 G T NAT16 Missense_Mutation p.A321D 0.24 deleterious(0.02) possibly_damaging(0.663) TCGA-33-4566-01 7 101801838 101801838 A G CUX1 Splice_Site p.X236_splice 0.29 TCGA-33-4566-01 7 103207056 103207056 G A RELN Missense_Mutation p.P1580L 0.34 deleterious(0) probably_damaging(1) TCGA-33-4566-01 7 106509447 106509447 G T PIK3CG Missense_Mutation p.V481F 0.17 deleterious(0.02) possibly_damaging(0.904) TCGA-33-4566-01 7 107418651 107418651 G T SLC26A3 Missense_Mutation p.Q495K 0.28 tolerated(0.16) benign(0.034) TCGA-33-4566-01 7 108142935 108142935 C A PNPLA8 Missense_Mutation p.R453M 0.23 deleterious(0) probably_damaging(1) TCGA-33-4566-01 7 111508203 111508203 T G DOCK4 Missense_Mutation p.E706A 0.14 deleterious(0) probably_damaging(0.945) TCGA-33-4566-01 7 111509627 111509627 C A DOCK4 Intron 0.16 TCGA-33-4566-01 7 11209131 11209131 G A PHF14 3'Flank 0.36 TCGA-33-4566-01 7 117431274 117431274 G - CTTNBP2 Frame_Shift_Del p.P659Lfs*10 0.24 TCGA-33-4566-01 7 117432359 117432359 T G CTTNBP2 Silent p.T297T 0.18 TCGA-33-4566-01 7 119915167 119915167 G C KCND2 Missense_Mutation p.A161P 0.26 tolerated(0.34) benign(0.001) TCGA-33-4566-01 7 121716431 121716431 C G AASS 3'UTR 0.33 TCGA-33-4566-01 7 121738556 121738556 T A AASS Nonsense_Mutation p.K535* 0.16 TCGA-33-4566-01 7 121738574 121738574 C A AASS Missense_Mutation p.V529F 0.27 deleterious(0.01) possibly_damaging(0.853) TCGA-33-4566-01 7 121773664 121773664 C A AASS Missense_Mutation p.R39S 0.30 deleterious(0) probably_damaging(1) TCGA-33-4566-01 7 122342063 122342063 C T RNF148 Missense_Mutation p.D248N 0.17 deleterious(0) benign(0.265) TCGA-33-4566-01 7 126173635 126173635 C G GRM8 Missense_Mutation p.V601L 0.33 deleterious(0.02) possibly_damaging(0.566) TCGA-33-4566-01 7 127253566 127253566 G T PAX4 Missense_Mutation p.P187T 0.20 deleterious(0) probably_damaging(0.999) TCGA-33-4566-01 7 129091497 129091497 G T STRIP2 Missense_Mutation p.K106N 0.39 tolerated(0.19) possibly_damaging(0.491) TCGA-33-4566-01 7 129093116 129093116 G T STRIP2 Missense_Mutation p.R153M 0.24 deleterious(0) probably_damaging(0.98) TCGA-33-4566-01 7 131866260 131866261 - T PLXNA4 Frame_Shift_Ins p.N1124Kfs*22 0.20 TCGA-33-4566-01 7 135261844 135261844 A G NUP205 Missense_Mutation p.R206G 0.26 deleterious(0) probably_damaging(0.992) TCGA-33-4566-01 7 135312824 135312824 T C NUP205 Missense_Mutation p.S1633P 0.29 deleterious(0) probably_damaging(0.998) TCGA-33-4566-01 7 136700561 136700561 G T CHRM2 Missense_Mutation p.D317Y 0.18 tolerated(0.07) benign(0.255) TCGA-33-4566-01 7 137075965 137075965 G C DGKI 3'UTR 0.19 TCGA-33-4566-01 7 137206685 137206685 C G DGKI Missense_Mutation p.R725S 0.20 tolerated(0.06) probably_damaging(0.996) TCGA-33-4566-01 7 139826556 139826556 C G KDM7A Missense_Mutation p.D257H 0.27 deleterious(0) probably_damaging(0.987) TCGA-33-4566-01 7 141420746 141420746 T A WEE2 Nonsense_Mutation p.L257* 0.26 TCGA-33-4566-01 7 141736022 141736022 G A MGAM Silent p.R671R 0.54 TCGA-33-4566-01 7 142032258 142032258 C A TRBV7-1 Silent p.S26S 0.39 TCGA-33-4566-01 7 142168565 142168565 C A TRBV5-4 Missense_Mutation p.W53L 0.23 deleterious(0) probably_damaging(0.986) TCGA-33-4566-01 7 142510429 142510429 C A TRBV30 Missense_Mutation p.R59S 0.32 tolerated(0.17) benign(0.037) TCGA-33-4566-01 7 143053572 143053572 G C FAM131B 3'UTR 0.23 TCGA-33-4566-01 7 143632509 143632509 T C OR2F2 Missense_Mutation p.F62L 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-33-4566-01 7 143701517 143701517 G T OR6B1 Missense_Mutation p.R143L 0.29 tolerated(0.51) benign(0.003) TCGA-33-4566-01 7 14622750 14622750 G T DGKB Missense_Mutation p.F483L 0.33 deleterious(0) possibly_damaging(0.803) TCGA-33-4566-01 7 147600693 147600693 A T CNTNAP2 Missense_Mutation p.N712I 0.29 deleterious(0) probably_damaging(0.957) TCGA-33-4566-01 7 147600694 147600694 C A CNTNAP2 Missense_Mutation p.N712K 0.29 tolerated(0.07) benign(0.414) TCGA-33-4566-01 7 148801268 148801268 C A ZNF425 Missense_Mutation p.W565C 0.35 tolerated(0.1) probably_damaging(0.95) TCGA-33-4566-01 7 148801269 148801269 C A ZNF425 Missense_Mutation p.W565L 0.36 tolerated(0.95) benign(0.03) TCGA-33-4566-01 7 148921516 148921516 G C ZNF282 Missense_Mutation p.G598A 0.18 deleterious(0.01) benign(0.267) TCGA-33-4566-01 7 150174527 150174527 G C GIMAP8 Missense_Mutation p.G553R 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-33-4566-01 7 150217668 150217668 T A GIMAP7 Silent p.S202S 0.26 TCGA-33-4566-01 7 150417247 150417247 G T GIMAP1 Missense_Mutation p.R52L 0.20 tolerated(0.65) benign(0.102) TCGA-33-4566-01 7 1532691 1532691 T C INTS1 Missense_Mutation p.N707S 0.24 tolerated(0.07) benign(0.011) TCGA-33-4566-01 7 1539521 1539521 T A INTS1 Missense_Mutation p.K228M 0.17 deleterious(0) possibly_damaging(0.832) TCGA-33-4566-01 7 1539889 1539889 T G INTS1 Missense_Mutation p.K155Q 0.46 deleterious(0) probably_damaging(0.979) TCGA-33-4566-01 7 15458244 15458244 G T AGMO Missense_Mutation p.P183H 0.25 deleterious(0) probably_damaging(0.998) TCGA-33-4566-01 7 15458245 15458245 G T AGMO Missense_Mutation p.P183T 0.25 deleterious(0) probably_damaging(0.998) TCGA-33-4566-01 7 16705107 16705107 G T BZW2 Silent p.R13R 0.36 TCGA-33-4566-01 7 18914114 18914114 C A HDAC9 Missense_Mutation p.P900T 0.22 deleterious(0) probably_damaging(0.999) TCGA-33-4566-01 7 21639426 21639426 G C DNAH11 Missense_Mutation p.A897P 0.45 probably_damaging(0.98) TCGA-33-4566-01 7 23309634 23309634 C G GPNMB Missense_Mutation p.I435M 0.34 tolerated(0.2) benign(0.007) TCGA-33-4566-01 7 23309696 23309696 G T GPNMB Missense_Mutation p.R456L 0.37 deleterious(0) probably_damaging(1) TCGA-33-4566-01 7 23792389 23792389 G T STK31 Missense_Mutation p.K357N 0.19 tolerated(0.2) benign(0.356) TCGA-33-4566-01 7 23802424 23802424 A T STK31 Missense_Mutation p.E433V 0.39 deleterious(0) probably_damaging(0.99) TCGA-33-4566-01 7 23808706 23808706 T G STK31 Missense_Mutation p.C503W 0.24 deleterious(0.02) possibly_damaging(0.76) TCGA-33-4566-01 7 26235514 26235514 C A HNRNPA2B1 Missense_Mutation p.G237V 0.38 deleterious(0.03) unknown(0) TCGA-33-4566-01 7 27135534 27135534 G T HOXA1 5'UTR 0.46 TCGA-33-4566-01 7 27196050 27196050 C A HOXA7 Missense_Mutation p.G39C 0.12 deleterious(0) probably_damaging(0.952) TCGA-33-4566-01 7 29126100 29126100 C A CPVL Missense_Mutation p.E203D 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-33-4566-01 7 30544212 30544212 C G GGCT Silent p.A38A 0.33 TCGA-33-4566-01 7 31011577 31011577 G T GHRHR Splice_Site p.X155_splice 0.11 TCGA-33-4566-01 7 34014336 34014336 G C BMPER Missense_Mutation p.Q172H 0.37 tolerated(0.19) benign(0.021) TCGA-33-4566-01 7 34091578 34091578 G A BMPER Missense_Mutation p.C261Y 0.39 deleterious(0) probably_damaging(0.999) TCGA-33-4566-01 7 34118635 34118635 C T BMPER Silent p.F415F 0.40 TCGA-33-4566-01 7 34698023 34698023 C A NPSR1 5'UTR 0.20 TCGA-33-4566-01 7 38424479 38424479 G T AMPH Nonsense_Mutation p.Y676* 0.28 TCGA-33-4566-01 7 41729316 41729316 C T INHBA Missense_Mutation p.D405N 0.38 tolerated(0.59) probably_damaging(0.973) TCGA-33-4566-01 7 42005297 42005297 C A GLI3 Missense_Mutation p.G1125V 0.22 tolerated(0.23) benign(0.021) TCGA-33-4566-01 7 44804560 44804560 G T ZMIZ2 Missense_Mutation p.G650V 0.30 deleterious(0) probably_damaging(0.993) TCGA-33-4566-01 7 44874045 44874045 C A H2AFV 3'UTR 0.41 TCGA-33-4566-01 7 45223153 45223153 G T RAMP3 3'UTR 0.55 TCGA-33-4566-01 7 48318020 48318020 G T ABCA13 Missense_Mutation p.G2410V 0.38 benign(0.001) TCGA-33-4566-01 7 48451964 48451964 G T ABCA13 Missense_Mutation p.E4081D 0.36 possibly_damaging(0.892) TCGA-33-4566-01 7 5103661 5103661 G A RBAK Missense_Mutation p.E192K 0.52 tolerated(0.18) possibly_damaging(0.81) TCGA-33-4566-01 7 53103778 53103778 C A POM121L12 Silent p.T138T 0.44 TCGA-33-4566-01 7 54610415 54610416 CT A VSTM2A 5'UTR 0.31 TCGA-33-4566-01 7 55269425 55269425 C T EGFR Intron 0.20 TCGA-33-4566-01 7 57529414 57529414 C G ZNF716 Missense_Mutation p.A416G 0.33 deleterious(0.03) benign(0.109) TCGA-33-4566-01 7 5754762 5754762 C A RNF216 Silent p.T585T 0.39 TCGA-33-4566-01 7 64378077 64378079 TCT AC ZNF273 Frame_Shift_Del p.V74Dfs*12 0.10 TCGA-33-4566-01 7 6624666 6624666 G T ZDHHC4 Silent p.V172V 0.15 TCGA-33-4566-01 7 73279936 73279936 G T WBSCR28 Missense_Mutation p.K177N 0.42 tolerated(0.06) benign(0.011) TCGA-33-4566-01 7 73818244 73818244 C T CLIP2 3'UTR 0.40 TCGA-33-4566-01 7 74211637 74211637 C T GTF2IRD2 Silent p.G738G 0.21 TCGA-33-4566-01 7 7571510 7571510 G A COL28A1 Silent p.V50V 0.15 TCGA-33-4566-01 7 77210755 77210755 C T PTPN12 Nonsense_Mutation p.R74* 0.17 TCGA-33-4566-01 7 77814960 77814960 C A MAGI2 Missense_Mutation p.R766L 0.21 tolerated(0.56) benign(0.115) TCGA-33-4566-01 7 80374286 80374286 C G SEMA3C Missense_Mutation p.G727A 0.44 tolerated(0.31) probably_damaging(0.997) TCGA-33-4566-01 7 82538238 82538238 C G PCLO Silent p.P4464P 0.33 TCGA-33-4566-01 7 82544515 82544515 C T PCLO Missense_Mutation p.G4263R 0.09 unknown(0) TCGA-33-4566-01 7 82595101 82595101 C A PCLO Missense_Mutation p.G1335W 0.19 unknown(0) TCGA-33-4566-01 7 83590949 83590949 C A SEMA3A Missense_Mutation p.G685V 0.32 tolerated(0.3) benign(0.01) TCGA-33-4566-01 7 86416245 86416245 C G GRM3 Missense_Mutation p.I379M 0.25 tolerated(0.12) benign(0.056) TCGA-33-4566-01 7 87370833 87370833 G T RUNDC3B Missense_Mutation p.E206D 0.38 deleterious(0.03) benign(0.062) TCGA-33-4566-01 7 883097 883097 G T SUN1 Missense_Mutation p.A200S 0.20 tolerated(0.16) probably_damaging(0.924) TCGA-33-4566-01 7 88964054 88964054 A G ZNF804B Silent p.T586T 0.32 TCGA-33-4566-01 7 90613556 90613556 G T CDK14 Silent p.L329L 0.24 TCGA-33-4566-01 7 91867069 91867069 T C KRIT1 Silent p.K89K 0.16 TCGA-33-4566-01 7 92848547 92848547 G T HEPACAM2 Silent p.T99T 0.46 TCGA-33-4566-01 7 95775920 95775920 C A SLC25A13 Missense_Mutation p.R468L 0.33 deleterious(0.01) benign(0.157) TCGA-33-4566-01 7 96650126 96650126 G T DLX5 Silent p.A264A 0.39 TCGA-33-4566-01 7 99459374 99459374 C A CYP3A43 Missense_Mutation p.P389T 0.40 deleterious(0) probably_damaging(0.955) TCGA-33-4566-01 7 99668855 99668855 G T ZNF3 Missense_Mutation p.H418N 0.45 deleterious(0) probably_damaging(0.984) TCGA-33-4566-01 7 99701305 99701305 G C AP4M1 Missense_Mutation p.R178P 0.24 deleterious(0.01) probably_damaging(0.982) TCGA-33-4566-01 7 99757738 99757738 C T GAL3ST4 Missense_Mutation p.R425H 0.20 deleterious(0) probably_damaging(0.995) TCGA-33-4566-01 7 99971923 99971923 C A PILRA Missense_Mutation p.S107R 0.36 tolerated(0.07) benign(0.082) TCGA-33-4566-01 8 103324640 103324640 C A UBR5 Missense_Mutation p.S694I 0.43 tolerated(0.1) benign(0.016) TCGA-33-4566-01 8 10466885 10466885 C T RP1L1 Missense_Mutation p.E1575K 0.29 unknown(0) TCGA-33-4566-01 8 105264107 105264107 A T RIMS2 3'Flank 0.48 TCGA-33-4566-01 8 110569170 110569170 A T EBAG9 Missense_Mutation p.I110F 0.29 deleterious(0.01) benign(0.206) TCGA-33-4566-01 8 113332171 113332171 G T CSMD3 Missense_Mutation p.P2402H 0.16 deleterious(0) possibly_damaging(0.811) TCGA-33-4566-01 8 113353715 113353715 C A CSMD3 Missense_Mutation p.V2215L 0.21 tolerated(0.33) benign(0.013) TCGA-33-4566-01 8 119936778 119936778 G A TNFRSF11B Silent p.H347H 0.09 TCGA-33-4566-01 8 120744199 120744199 C A TAF2 Missense_Mutation p.G1189C 0.44 deleterious_low_confidence(0) possibly_damaging(0.547) TCGA-33-4566-01 8 124408531 124408531 C A ATAD2 Missense_Mutation p.D23Y 0.31 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-33-4566-01 8 124659171 124659171 C A KLHL38 Silent p.G478G 0.41 TCGA-33-4566-01 8 131955658 131955658 G T ADCY8 Missense_Mutation p.S431Y 0.09 deleterious(0) probably_damaging(0.987) TCGA-33-4566-01 8 132002665 132002665 G T ADCY8 Missense_Mutation p.R362S 0.19 deleterious(0.03) benign(0.163) TCGA-33-4566-01 8 133182664 133182664 C A KCNQ3 Missense_Mutation p.R384S 0.20 deleterious(0) benign(0.159) TCGA-33-4566-01 8 133196528 133196528 C A KCNQ3 Silent p.R188R 0.17 TCGA-33-4566-01 8 133961037 133961037 G T TG Silent p.G1750G 0.18 TCGA-33-4566-01 8 139144863 139144863 C T FAM135B Silent p.L1398L 0.06 TCGA-33-4566-01 8 14022118 14022118 G T SGCZ Missense_Mutation p.T173N 0.37 deleterious(0) benign(0.091) TCGA-33-4566-01 8 141034035 141034035 T A TRAPPC9 Missense_Mutation p.S998C 0.19 deleterious(0.04) probably_damaging(0.992) TCGA-33-4566-01 8 141582932 141582932 G A AGO2 Silent p.P105P 0.42 TCGA-33-4566-01 8 143559664 143559664 G A BAI1 Missense_Mutation p.A502T 0.48 tolerated(0.09) possibly_damaging(0.787) TCGA-33-4566-01 8 143695373 143695373 C A ARC Missense_Mutation p.W87L 0.19 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-33-4566-01 8 143960516 143960516 G T CYP11B1 Missense_Mutation p.H109Q 0.17 tolerated(0.43) benign(0.002) TCGA-33-4566-01 8 144240339 144240339 G T LY6H Missense_Mutation p.A44D 0.33 deleterious(0) unknown(0) TCGA-33-4566-01 8 144511677 144511678 - A MAFA Frame_Shift_Ins p.R302Afs*135 0.41 TCGA-33-4566-01 8 144644650 144644650 G T GSDMD Nonsense_Mutation p.E391* 0.20 TCGA-33-4566-01 8 144657373 144657373 G C NAPRT1 Silent p.L478L 0.23 TCGA-33-4566-01 8 1514000 1514000 C A DLGAP2 Missense_Mutation p.A381E 0.29 deleterious(0.02) benign(0.13) TCGA-33-4566-01 8 17541903 17541903 C A MTUS1 Missense_Mutation p.Q924H 0.32 deleterious(0.04) benign(0.099) TCGA-33-4566-01 8 22049654 22049654 G T BMP1 Silent p.A390A 0.30 TCGA-33-4566-01 8 24324400 24324400 C T ADAM7 Silent p.L160L 0.33 TCGA-33-4566-01 8 25364168 25364168 T C CDCA2 Silent p.Y662Y 0.41 TCGA-33-4566-01 8 26627827 26627827 T C ADRA1A Missense_Mutation p.K414E 0.36 tolerated_low_confidence(0.25) benign(0.08) TCGA-33-4566-01 8 30700887 30700887 C A TEX15 Missense_Mutation p.G1883C 0.33 deleterious(0) probably_damaging(1) TCGA-33-4566-01 8 30703577 30703577 G C TEX15 Missense_Mutation p.S986C 0.33 deleterious(0) probably_damaging(0.999) TCGA-33-4566-01 8 3087562 3087562 C A CSMD1 Missense_Mutation p.A1449S 0.26 possibly_damaging(0.452) TCGA-33-4566-01 8 36788571 36788571 G T KCNU1 Missense_Mutation p.V947L 0.41 tolerated(0.92) benign(0.001) TCGA-33-4566-01 8 39602352 39602352 G T ADAM2 3'UTR 0.38 TCGA-33-4566-01 8 48649848 48649848 G A CEBPD 3'UTR 0.39 TCGA-33-4566-01 8 52322096 52322096 G A PXDNL Silent p.S696S 0.19 TCGA-33-4566-01 8 53076624 53076624 G T ST18 Missense_Mutation p.A441D 0.44 deleterious(0) probably_damaging(1) TCGA-33-4566-01 8 53092721 53092721 C T ST18 Missense_Mutation p.D80N 0.39 tolerated(0.14) benign(0.002) TCGA-33-4566-01 8 67064773 67064773 G T TRIM55 Nonsense_Mutation p.E383* 0.29 TCGA-33-4566-01 8 67064781 67064781 G T TRIM55 Missense_Mutation p.Q385H 0.25 tolerated_low_confidence(0.07) benign(0.002) TCGA-33-4566-01 8 72755880 72755880 C T RP11-383H13.1 Nonsense_Mutation p.Q82* 0.17 TCGA-33-4566-01 8 73479991 73479991 G T KCNB2 Missense_Mutation p.G8C 0.18 deleterious_low_confidence(0) possibly_damaging(0.521) TCGA-33-4566-01 8 77764403 77764403 G T ZFHX4 Missense_Mutation p.S1749I 0.14 possibly_damaging(0.607) TCGA-33-4566-01 8 77895457 77895457 C A PEX2 3'UTR 0.46 TCGA-33-4566-01 8 77895459 77895459 C A PEX2 3'UTR 0.45 TCGA-33-4566-01 8 82606632 82606632 C T SLC10A5 Silent p.G192G 0.17 TCGA-33-4566-01 8 87153719 87153719 T G ATP6V0D2 Missense_Mutation p.D174E 0.28 tolerated(0.09) benign(0.367) TCGA-33-4566-01 8 87226572 87226572 T A SLC7A13 3'UTR 0.52 TCGA-33-4566-01 8 87229835 87229835 G T SLC7A13 Missense_Mutation p.S348Y 0.22 deleterious(0) probably_damaging(0.988) TCGA-33-4566-01 8 87235208 87235208 G T SLC7A13 Silent p.L270L 0.40 TCGA-33-4566-01 8 87755878 87755878 A G CNGB3 5'UTR 0.36 TCGA-33-4566-01 8 89053926 89053926 A C MMP16 Missense_Mutation p.F529L 0.43 tolerated(0.05) benign(0.133) TCGA-33-4566-01 8 89128775 89128775 G A MMP16 Silent p.N348N 0.14 TCGA-33-4566-01 8 89128850 89128850 T A MMP16 Silent p.P323P 0.20 TCGA-33-4566-01 8 92007857 92007857 C A TMEM55A 3'UTR 0.19 TCGA-33-4566-01 8 92406201 92406201 A G SLC26A7 Silent p.L623L 0.35 TCGA-33-4566-01 8 99961435 99961435 C G OSR2 Missense_Mutation p.F85L 0.39 tolerated_low_confidence(0.71) benign(0.002) TCGA-33-4566-01 8 99963899 99963899 C A OSR2 Missense_Mutation p.S303R 0.16 tolerated(1) possibly_damaging(0.89) TCGA-33-4566-01 9 100692380 100692380 G T HEMGN Missense_Mutation p.P433T 0.20 tolerated(0.1) probably_damaging(0.991) TCGA-33-4566-01 9 101747923 101747923 A T COL15A1 Silent p.T59T 0.44 TCGA-33-4566-01 9 101777769 101777769 A T COL15A1 Missense_Mutation p.D475V 0.48 deleterious_low_confidence(0.04) benign(0.368) TCGA-33-4566-01 9 101829241 101829241 T A COL15A1 Silent p.A1243A 0.46 TCGA-33-4566-01 9 102609735 102609735 G C NR4A3 Missense_Mutation p.D502H 0.34 tolerated(0.06) probably_damaging(0.96) TCGA-33-4566-01 9 104432717 104432717 G A GRIN3A Silent p.T659T 0.44 TCGA-33-4566-01 9 1056414 1056414 C A DMRT2 Missense_Mutation p.P276H 0.60 tolerated(1) benign(0.002) TCGA-33-4566-01 9 105767109 105767109 G T CYLC2 Missense_Mutation p.V105F 0.40 tolerated(0.72) benign(0.002) TCGA-33-4566-01 9 107266977 107266977 C A OR13F1 Missense_Mutation p.A145E 0.46 deleterious(0) probably_damaging(0.957) TCGA-33-4566-01 9 107576438 107576438 C A ABCA1 Missense_Mutation p.D1288Y 0.17 deleterious(0.01) probably_damaging(0.977) TCGA-33-4566-01 9 107618158 107618158 G C ABCA1 Intron 0.40 TCGA-33-4566-01 9 111899755 111899755 G T FRRS1L Missense_Mutation p.L339I 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.899) TCGA-33-4566-01 9 113170526 113170526 C T SVEP1 Missense_Mutation p.D2452N 0.32 probably_damaging(0.933) TCGA-33-4566-01 9 113192679 113192679 C A SVEP1 Missense_Mutation p.G1802V 0.30 probably_damaging(0.955) TCGA-33-4566-01 9 113194802 113194802 C A SVEP1 Missense_Mutation p.D1725Y 0.38 probably_damaging(1) TCGA-33-4566-01 9 114289897 114289897 G A ZNF483 Nonsense_Mutation p.W74* 0.28 TCGA-33-4566-01 9 115652195 115652195 A G SLC46A2 Missense_Mutation p.L256P 0.21 tolerated(0.13) benign(0.269) TCGA-33-4566-01 9 115806140 115806140 C A ZFP37 Missense_Mutation p.C253F 0.32 tolerated(0.78) benign(0.022) TCGA-33-4566-01 9 117228590 117228590 G A DFNB31 Missense_Mutation p.T307I 0.43 deleterious(0) probably_damaging(0.991) TCGA-33-4566-01 9 120053605 120053605 C A ASTN2 Missense_Mutation p.M210I 0.20 deleterious_low_confidence(0) benign(0) TCGA-33-4566-01 9 125148949 125148949 A T PTGS1 Missense_Mutation p.M412L 0.20 tolerated(0.62) benign(0.004) TCGA-33-4566-01 9 125273890 125273890 G T OR1J2 Missense_Mutation p.K270N 0.19 tolerated_low_confidence(0.08) benign(0.327) TCGA-33-4566-01 9 125330086 125330086 G T OR1L8 Missense_Mutation p.T224N 0.20 tolerated(0.31) benign(0.005) TCGA-33-4566-01 9 126125141 126125141 C A CRB2 Intron 0.19 TCGA-33-4566-01 9 130213652 130213652 C A RPL12 5'UTR 0.47 TCGA-33-4566-01 9 13107037 13107037 C - MPDZ Frame_Shift_Del p.G2018Efs*20 0.39 TCGA-33-4566-01 9 131087483 131087483 G A COQ4 Silent p.Q88Q 0.17 TCGA-33-4566-01 9 131094561 131094561 G T COQ4 Missense_Mutation p.G178W 0.33 deleterious(0) probably_damaging(1) TCGA-33-4566-01 9 133577673 133577674 - G EXOSC2 Frame_Shift_Ins p.F219Lfs*12 0.33 TCGA-33-4566-01 9 134106048 134106048 G T NUP214 Missense_Mutation p.G2036C 0.36 probably_damaging(0.995) TCGA-33-4566-01 9 134165440 134165440 G T PPAPDC3 Missense_Mutation p.R19L 0.36 deleterious(0) probably_damaging(0.997) TCGA-33-4566-01 9 134183627 134183627 G T PPAPDC3 Missense_Mutation p.V257F 0.15 tolerated(0.32) benign(0.238) TCGA-33-4566-01 9 134396836 134396836 G A POMT1 Missense_Mutation p.R623K 0.14 deleterious(0.03) probably_damaging(0.992) TCGA-33-4566-01 9 135862794 135862794 G T GFI1B Missense_Mutation p.A76S 0.34 tolerated(0.94) benign(0.001) TCGA-33-4566-01 9 135906463 135906463 G A GTF3C5 Missense_Mutation p.R22Q 0.26 tolerated(0.07) benign(0.121) TCGA-33-4566-01 9 136304491 136304491 T A ADAMTS13 Nonsense_Mutation p.Y570* 0.18 TCGA-33-4566-01 9 137593147 137593147 G A COL5A1 Missense_Mutation p.G208S 0.13 probably_damaging(1) TCGA-33-4566-01 9 139741707 139741707 C G C9orf172 Silent p.G947G 0.41 TCGA-33-4566-01 9 139909925 139909925 T C ABCA2 Missense_Mutation p.Y1213C 0.50 deleterious(0) probably_damaging(0.967) TCGA-33-4566-01 9 140100357 140100357 A G NDOR1 Missense_Mutation p.Y43C 0.12 deleterious(0.02) benign(0.287) TCGA-33-4566-01 9 140846807 140846807 C A CACNA1B Missense_Mutation p.L350M 0.39 deleterious(0) possibly_damaging(0.486) TCGA-33-4566-01 9 140991014 140991014 C A CACNA1B Missense_Mutation p.H1725N 0.15 deleterious(0) possibly_damaging(0.776) TCGA-33-4566-01 9 14307058 14307058 G T NFIB Silent p.V164V 0.64 TCGA-33-4566-01 9 15848936 15848936 G T CCDC171 Silent p.T1153T 0.53 TCGA-33-4566-01 9 17487026 17487026 G T CNTLN Nonsense_Mutation p.E1361* 0.54 TCGA-33-4566-01 9 18950896 18950896 A G FAM154A Silent p.D26D 0.62 TCGA-33-4566-01 9 27950283 27950283 G - LINGO2 Frame_Shift_Del p.N130Ifs*16 0.40 TCGA-33-4566-01 9 32631522 32631522 C A TAF1L Silent p.V1352V 0.63 TCGA-33-4566-01 9 3277416 3277416 T G RFX3 Silent p.T299T 0.65 TCGA-33-4566-01 9 34493299 34493299 G T DNAI1 Missense_Mutation p.M263I 0.64 tolerated(0.36) benign(0.002) TCGA-33-4566-01 9 35091903 35091903 C A PIGO Missense_Mutation p.V661L 0.62 tolerated(0.17) benign(0.101) TCGA-33-4566-01 9 37512501 37512501 C T FBXO10 3'UTR 0.62 TCGA-33-4566-01 9 43624970 43624970 G C SPATA31A6 Silent p.V1239V 0.56 TCGA-33-4566-01 9 43885067 43885067 G T CNTNAP3B Missense_Mutation p.G787V 0.52 deleterious(0) probably_damaging(0.996) TCGA-33-4566-01 9 7011847 7011847 G T KDM4C Missense_Mutation p.A646S 0.48 tolerated(0.16) probably_damaging(0.914) TCGA-33-4566-01 9 70177163 70177163 G T FOXD4L5 Nonsense_Mutation p.S274* 0.11 TCGA-33-4566-01 9 73235224 73235224 C G TRPM3 Missense_Mutation p.D621H 0.21 deleterious(0.03) probably_damaging(0.991) TCGA-33-4566-01 9 73240205 73240205 C A TRPM3 Missense_Mutation p.G559C 0.19 deleterious(0.02) probably_damaging(0.993) TCGA-33-4566-01 9 73426110 73426110 C A TRPM3 Intron 0.34 TCGA-33-4566-01 9 74828854 74828854 C A GDA Missense_Mutation p.D175E 0.22 tolerated(0.53) benign(0) TCGA-33-4566-01 9 74970881 74970881 A T ZFAND5 Silent p.I210I 0.21 TCGA-33-4566-01 9 77442862 77442862 C A TRPM6 Missense_Mutation p.V225L 0.20 tolerated(0.05) benign(0.057) TCGA-33-4566-01 9 77563085 77563085 T A C9orf40 Missense_Mutation p.Y155F 0.23 tolerated(0.09) possibly_damaging(0.801) TCGA-33-4566-01 9 79320494 79320494 T G PRUNE2 Silent p.A2232A 0.25 TCGA-33-4566-01 9 82187680 82187680 G A TLE4 5'UTR 0.27 TCGA-33-4566-01 9 82323695 82323695 A T TLE4 Silent p.S419S 0.21 TCGA-33-4566-01 9 84608354 84608354 C A SPATA31D1 Missense_Mutation p.S990Y 0.26 deleterious(0.02) benign(0.102) TCGA-33-4566-01 9 8497241 8497241 C A PTPRD Splice_Site p.X783_splice 0.50 TCGA-33-4566-01 9 86503502 86503502 C A KIF27 Missense_Mutation p.R662I 0.27 tolerated(0.34) benign(0.001) TCGA-33-4566-01 9 86893173 86893173 G A SLC28A3 Missense_Mutation p.P679L 0.26 tolerated(0.11) benign(0.013) TCGA-33-4566-01 9 91150625 91150625 G C NXNL2 Silent p.A92A 0.15 TCGA-33-4566-01 9 94495406 94495406 C A ROR2 Missense_Mutation p.R312L 0.36 tolerated(0.15) benign(0.081) TCGA-33-4566-01 9 95099822 95099822 G T CENPP Splice_Site p.X97_splice 0.25 TCGA-33-4566-01 9 99285911 99285911 C T CDC14B Missense_Mutation p.R348K 0.20 deleterious(0) probably_damaging(1) TCGA-33-4566-01 X 100611135 100611135 G C BTK Missense_Mutation p.H491D 0.63 tolerated(0.06) benign(0.042) TCGA-33-4566-01 X 100881116 100881116 G C ARMCX3 3'UTR 0.72 TCGA-33-4566-01 X 101096237 101096237 G T NXF5 Missense_Mutation p.D129E 0.44 tolerated(0.06) possibly_damaging(0.623) TCGA-33-4566-01 X 101857624 101857624 G T ARMCX5 Missense_Mutation p.W185C 0.62 deleterious(0) probably_damaging(0.998) TCGA-33-4566-01 X 101909360 101909360 G C GPRASP1 Silent p.G173G 0.71 TCGA-33-4566-01 X 103268110 103268110 C A H2BFWT Missense_Mutation p.Q41H 0.40 tolerated(0.11) benign(0.187) TCGA-33-4566-01 X 107975735 107975735 C A IRS4 3'UTR 0.74 TCGA-33-4566-01 X 110491797 110491797 C A CAPN6 Missense_Mutation p.R495M 0.78 deleterious(0) probably_damaging(0.951) TCGA-33-4566-01 X 111698734 111698734 C G ZCCHC16 Missense_Mutation p.R260G 0.56 deleterious(0.04) probably_damaging(0.923) TCGA-33-4566-01 X 118223502 118223502 T A KIAA1210 Missense_Mutation p.Y564F 0.66 tolerated(0.7) benign(0.001) TCGA-33-4566-01 X 120182757 120182757 G - GLUD2 Frame_Shift_Del p.P408Qfs*23 0.44 TCGA-33-4566-01 X 123518504 123518504 C A TENM1 Missense_Mutation p.D2093Y 0.65 deleterious(0) possibly_damaging(0.897) TCGA-33-4566-01 X 123554331 123554331 C A TENM1 Silent p.P1604P 0.77 TCGA-33-4566-01 X 123870989 123870989 C A TENM1 Silent p.P198P 0.69 TCGA-33-4566-01 X 125685195 125685195 C A DCAF12L1 3'UTR 0.35 TCGA-33-4566-01 X 125686130 125686130 G A DCAF12L1 Silent p.A154A 0.69 TCGA-33-4566-01 X 125686131 125686131 G C DCAF12L1 Missense_Mutation p.A154G 0.70 deleterious(0) possibly_damaging(0.844) TCGA-33-4566-01 X 128630823 128630823 C A SMARCA1 Missense_Mutation p.Q510H 0.69 deleterious(0) probably_damaging(0.954) TCGA-33-4566-01 X 135431464 135431464 G T GPR112 Nonsense_Mutation p.G1867* 0.69 TCGA-33-4566-01 X 139866314 139866314 A G CDR1 Missense_Mutation p.M73T 0.60 tolerated(0.36) benign(0.092) TCGA-33-4566-01 X 1404669 1404669 A T CSF2RA Splice_Site p.X26_splice 0.27 TCGA-33-4566-01 X 141291506 141291506 C A MAGEC2 Missense_Mutation p.G90C 0.63 tolerated(0.07) benign(0.393) TCGA-33-4566-01 X 144906278 144906278 T - SLITRK2 Frame_Shift_Del p.L779Yfs*108 0.40 TCGA-33-4566-01 X 146295104 146295104 C A MIR513A1 RNA 0.45 TCGA-33-4566-01 X 14861980 14861980 C A FANCB Missense_Mutation p.L763F 0.52 deleterious(0) probably_damaging(1) TCGA-33-4566-01 X 151092212 151092212 G T MAGEA4 Missense_Mutation p.V26L 0.77 tolerated(0.22) benign(0.05) TCGA-33-4566-01 X 151900867 151900867 C A MAGEA12 5'UTR 0.68 TCGA-33-4566-01 X 152937126 152937126 G T PNCK Missense_Mutation p.P222H 0.61 deleterious(0) probably_damaging(0.991) TCGA-33-4566-01 X 153130878 153130878 G T L1CAM Silent p.A875A 0.66 TCGA-33-4566-01 X 153130879 153130879 G T L1CAM Missense_Mutation p.A875D 0.67 deleterious(0.02) possibly_damaging(0.72) TCGA-33-4566-01 X 23685870 23685870 G T PRDX4 Silent p.P61P 0.52 TCGA-33-4566-01 X 24544341 24544341 G C PDK3 Missense_Mutation p.V234L 0.36 deleterious(0.01) benign(0.003) TCGA-33-4566-01 X 31947805 31947805 C A DMD Nonsense_Mutation p.G2274* 0.40 TCGA-33-4566-01 X 3236019 3236019 C A MXRA5 Missense_Mutation p.R1901S 0.50 deleterious(0) possibly_damaging(0.904) TCGA-33-4566-01 X 3240743 3240743 C A MXRA5 Nonsense_Mutation p.E995* 0.51 TCGA-33-4566-01 X 41204663 41204663 G A DDX3X Missense_Mutation p.A393T 0.51 deleterious(0.02) possibly_damaging(0.609) TCGA-33-4566-01 X 41333780 41333780 C A NYX Silent p.T358T 0.50 TCGA-33-4566-01 X 48317372 48317372 C A SLC38A5 Missense_Mutation p.G456C 0.50 tolerated(0.09) probably_damaging(0.976) TCGA-33-4566-01 X 48687893 48687893 C A ERAS Missense_Mutation p.F120L 0.72 deleterious(0) probably_damaging(0.945) TCGA-33-4566-01 X 49958854 49958854 G A AKAP4 Silent p.N170N 0.53 TCGA-33-4566-01 X 5810954 5810954 T G NLGN4X Silent p.T785T 0.53 TCGA-33-4566-01 X 5827147 5827147 C A NLGN4X Silent p.S253S 0.31 TCGA-33-4566-01 X 64951020 64951020 G T MSN Missense_Mutation p.Q173H 0.43 deleterious(0.04) benign(0.042) TCGA-33-4566-01 X 68749658 68749658 C G FAM155B Silent p.L426L 0.73 TCGA-33-4566-01 X 71350437 71350437 C A RGAG4 Silent p.P318P 0.62 TCGA-33-4566-01 X 73045196 73045196 T C XIST RNA 0.70 TCGA-33-4566-01 X 73046296 73046296 T C XIST RNA 0.52 TCGA-33-4566-01 X 73047135 73047135 C A XIST RNA 0.76 TCGA-33-4566-01 X 73071059 73071059 G T XIST RNA 0.72 TCGA-33-4566-01 X 77284912 77284912 G T ATP7A Missense_Mutation p.G1028C 0.68 deleterious(0) probably_damaging(1) TCGA-33-4566-01 X 77913754 77913754 G T ZCCHC5 Missense_Mutation p.S55Y 0.58 tolerated_low_confidence(0.05) benign(0.006) TCGA-33-4566-01 X 92927476 92927476 T A NAP1L3 Silent p.A276A 0.68 TCGA-33-4566-01 X 92964359 92964359 G T FAM133A 5'UTR 0.67 TCGA-33-4582-01 10 118396324 118396324 G C PNLIPRP2 Missense_Mutation p.G322A 0.62 deleterious(0.02) benign(0.446) TCGA-33-4582-01 10 27459686 27459686 G A MASTL Missense_Mutation p.E600K 0.31 deleterious(0.01) probably_damaging(0.926) TCGA-33-4582-01 10 43285800 43285800 G T BMS1 Silent p.G159G 0.21 TCGA-33-4582-01 10 4889809 4889809 G A AKR1E2 3'UTR 0.29 TCGA-33-4582-01 10 55582958 55582958 C A PCDH15 Missense_Mutation p.A1512S 0.68 tolerated_low_confidence(0.36) benign(0.006) TCGA-33-4582-01 10 55663006 55663006 C A PCDH15 Silent p.V1166V 0.55 TCGA-33-4582-01 10 74034084 74034084 C T DDIT4 Missense_Mutation p.A37V 0.62 tolerated(0.32) benign(0.057) TCGA-33-4582-01 10 76790711 76790711 C T KAT6B Silent p.H2043H 0.24 TCGA-33-4582-01 10 90362337 90362337 G C LIPJ Missense_Mutation p.R243P 0.33 deleterious(0) probably_damaging(0.977) TCGA-33-4582-01 10 98411397 98411397 C T PIK3AP1 Missense_Mutation p.G242R 0.33 deleterious(0) probably_damaging(1) TCGA-33-4582-01 11 102742661 102742661 G T MMP12 RNA 0.12 TCGA-33-4582-01 11 108382994 108382994 T C EXPH5 Silent p.E1080E 0.16 TCGA-33-4582-01 11 113651059 113651059 T A CLDN25 Missense_Mutation p.L181Q 0.33 tolerated(0.11) probably_damaging(0.925) TCGA-33-4582-01 11 14808182 14808182 G T PDE3B Missense_Mutation p.C410F 0.52 deleterious(0.02) probably_damaging(0.985) TCGA-33-4582-01 11 28058072 28058072 A G KIF18A Silent p.L696L 0.19 TCGA-33-4582-01 11 47830025 47830025 T C NUP160 Silent p.T766T 0.64 TCGA-33-4582-01 11 56143177 56143177 C A OR8U1 Silent p.P26P 0.22 TCGA-33-4582-01 11 60707042 60707042 C A SLC15A3 Missense_Mutation p.V449F 0.17 deleterious(0.04) benign(0.342) TCGA-33-4582-01 11 62296073 62296074 - C AHNAK Frame_Shift_Ins p.D1939Gfs*24 0.17 TCGA-33-4582-01 11 73389000 73389000 G A RAB6A Silent p.D190D 0.43 TCGA-33-4582-01 11 76814207 76814207 C T OMP Missense_Mutation p.R108C 0.19 deleterious_low_confidence(0) possibly_damaging(0.836) TCGA-33-4582-01 11 86662462 86662462 C G FZD4 Missense_Mutation p.V446L 0.07 deleterious(0) possibly_damaging(0.601) TCGA-33-4582-01 12 100043183 100043183 C A FAM71C 3'UTR 0.64 TCGA-33-4582-01 12 124130034 124130034 G C GTF2H3 Missense_Mutation p.M42I 0.68 tolerated(0.75) benign(0.007) TCGA-33-4582-01 12 57867924 57867924 C T ARHGAP9 Missense_Mutation p.D607N 0.19 deleterious(0) probably_damaging(0.999) TCGA-33-4582-01 12 69233474 69233474 T A MDM2 Missense_Mutation p.C447S 0.12 deleterious(0) probably_damaging(0.974) TCGA-33-4582-01 12 6947151 6947151 A G LEPREL2 Missense_Mutation p.Q619R 0.30 tolerated(0.1) benign(0.005) TCGA-33-4582-01 12 7593778 7593778 C T CD163L1 Silent p.L32L 0.39 TCGA-33-4582-01 12 9020847 9020847 C G A2ML1 Missense_Mutation p.L1319V 0.33 tolerated(0.26) benign(0.043) TCGA-33-4582-01 12 94690982 94690982 G A PLXNC1 Missense_Mutation p.D1318N 0.13 deleterious(0.04) benign(0.297) TCGA-33-4582-01 13 19751624 19751624 G T TUBA3C Missense_Mutation p.L167I 0.16 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-33-4582-01 13 50589841 50589841 T C KCNRG Missense_Mutation p.L71S 0.11 tolerated(0.31) benign(0.006) TCGA-33-4582-01 13 77581289 77581289 G C FBXL3 Silent p.P426P 0.15 TCGA-33-4582-01 13 77714292 77714292 T G MYCBP2 Missense_Mutation p.K2432Q 0.33 benign(0.018) TCGA-33-4582-01 14 101493134 101493134 G T MIR329-1 RNA 0.19 TCGA-33-4582-01 14 102552662 102552662 C G HSP90AA1 Missense_Mutation p.E140D 0.12 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-33-4582-01 14 103804221 103804221 G C EIF5 Intron 0.25 TCGA-33-4582-01 14 20612106 20612106 C G OR4N5 Missense_Mutation p.A71G 0.15 deleterious(0) benign(0.405) TCGA-33-4582-01 14 36946257 36946257 G A SFTA3 Silent p.C60C 0.15 TCGA-33-4582-01 14 51446263 51446263 C A TRIM9 Nonsense_Mutation p.E638* 0.32 TCGA-33-4582-01 14 68248188 68248188 C T ZFYVE26 Silent p.L1477L 0.07 TCGA-33-4582-01 14 73444717 73444717 T C ZFYVE1 Missense_Mutation p.Y518C 0.21 deleterious(0) probably_damaging(0.998) TCGA-33-4582-01 14 88654343 88654343 G A KCNK10 Silent p.L327L 0.20 TCGA-33-4582-01 15 28000605 28000605 T A OCA2 Missense_Mutation p.M816L 0.18 tolerated(0.2) benign(0.02) TCGA-33-4582-01 15 48748893 48748893 C A FBN1 Missense_Mutation p.S1788I 0.19 probably_damaging(0.999) TCGA-33-4582-01 15 53907987 53907987 C A WDR72 Nonsense_Mutation p.G806* 0.32 TCGA-33-4582-01 15 71341747 71341747 G A LRRC49 Splice_Site p.X625_splice 0.20 TCGA-33-4582-01 16 29376325 29376325 G A SNX29P2 RNA 0.15 TCGA-33-4582-01 16 31926937 31926937 C G ZNF267 Missense_Mutation p.T456R 0.11 tolerated(1) benign(0.005) TCGA-33-4582-01 16 52473846 52473846 C A TOX3 Missense_Mutation p.R341L 0.15 deleterious_low_confidence(0.01) probably_damaging(0.968) TCGA-33-4582-01 16 53338368 53338368 C T CHD9 Silent p.S2150S 0.27 TCGA-33-4582-01 16 56716392 56716392 T A MT1X 5'UTR 0.18 TCGA-33-4582-01 16 75148012 75148012 C G LDHD Silent p.G250G 0.57 TCGA-33-4582-01 16 75563556 75563556 C T CHST5 Missense_Mutation p.D243N 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-33-4582-01 16 780537 780537 C T NARFL Silent p.G437G 0.15 TCGA-33-4582-01 16 80638367 80638367 A G CDYL2 Missense_Mutation p.L480P 0.27 deleterious(0.02) possibly_damaging(0.541) TCGA-33-4582-01 16 84691194 84691194 G A KLHL36 Missense_Mutation p.A261T 0.10 tolerated(1) benign(0.006) TCGA-33-4582-01 16 9934909 9934909 T A GRIN2A Missense_Mutation p.I461F 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-33-4582-01 17 10359839 10359839 T C MYH4 Missense_Mutation p.K644R 0.57 deleterious(0.04) benign(0.378) TCGA-33-4582-01 17 10543358 10543358 C T MYH3 Silent p.V879V 0.28 TCGA-33-4582-01 17 3664340 3664340 C T ITGAE Missense_Mutation p.E189K 0.27 tolerated(0.31) benign(0.002) TCGA-33-4582-01 17 37370535 37370535 C G STAC2 Missense_Mutation p.V298L 0.40 deleterious(0) probably_damaging(0.913) TCGA-33-4582-01 17 37886012 37886012 C A MIEN1 Missense_Mutation p.A64S 0.18 tolerated(0.94) benign(0.081) TCGA-33-4582-01 17 39845247 39845247 G A EIF1 5'UTR 0.19 TCGA-33-4582-01 17 39913763 39913763 G A JUP Silent p.F650F 0.13 TCGA-33-4582-01 17 45821586 45821586 A G TBX21 Missense_Mutation p.K265R 0.10 deleterious(0.02) probably_damaging(0.99) TCGA-33-4582-01 17 46105865 46105865 G A COPZ2 Silent p.G184G 0.29 TCGA-33-4582-01 17 48819091 48819091 A T LUC7L3 Missense_Mutation p.Q142L 0.13 deleterious(0.01) unknown(0) TCGA-33-4582-01 17 72308155 72308155 A T DNAI2 Missense_Mutation p.E503V 0.38 deleterious(0) probably_damaging(0.925) TCGA-33-4582-01 17 74163102 74163102 C A RNF157 Missense_Mutation p.W183C 0.10 deleterious(0) probably_damaging(0.972) TCGA-33-4582-01 17 7577106 7577106 G A TP53 Missense_Mutation p.P278S 0.66 deleterious(0.03) probably_damaging(1) TCGA-33-4582-01 17 78196504 78196504 C T SLC26A11 Silent p.G95G 0.41 TCGA-33-4582-01 17 79095253 79095253 G A AATK Missense_Mutation p.T828M 0.40 tolerated(0.15) benign(0.066) TCGA-33-4582-01 18 12785772 12785772 C G PTPN2 3'UTR 0.56 TCGA-33-4582-01 18 13671861 13671861 C T FAM210A Silent p.K195K 0.18 TCGA-33-4582-01 18 33706701 33706701 G T SLC39A6 Silent p.I90I 0.21 TCGA-33-4582-01 18 63430272 63430272 C G CDH7 Missense_Mutation p.P65R 0.10 deleterious(0.01) probably_damaging(0.975) TCGA-33-4582-01 18 74962661 74962661 C A GALR1 Missense_Mutation p.L53I 0.46 deleterious(0.03) possibly_damaging(0.856) TCGA-33-4582-01 19 11456320 11456320 C G TMEM205 5'UTR 0.44 TCGA-33-4582-01 19 1270929 1270929 C T CIRBP Intron 0.26 TCGA-33-4582-01 19 15989680 15989680 G A CYP4F2 Silent p.R488R 0.51 TCGA-33-4582-01 19 16317171 16317171 G A AP1M1 Silent p.K73K 0.24 TCGA-33-4582-01 19 19905475 19905475 G C ZNF506 Missense_Mutation p.N407K 0.13 tolerated(0.51) benign(0.007) TCGA-33-4582-01 19 23406280 23406280 C A ZNF724P Missense_Mutation p.R256L 0.30 deleterious(0) benign(0.005) TCGA-33-4582-01 19 30498384 30498384 C G URI1 Missense_Mutation p.H175Q 0.13 tolerated(0.42) benign(0.009) TCGA-33-4582-01 19 3964897 3964897 C A DAPK3 Missense_Mutation p.S52I 0.21 deleterious(0) probably_damaging(0.999) TCGA-33-4582-01 19 463979 463979 T A ODF3L2 Silent p.P245P 0.62 TCGA-33-4582-01 19 49143530 49143530 C T CA11 Missense_Mutation p.G98E 0.32 deleterious(0) probably_damaging(0.997) TCGA-33-4582-01 19 49422337 49422337 G T NUCB1 Missense_Mutation p.M289I 0.17 deleterious(0) possibly_damaging(0.755) TCGA-33-4582-01 19 50358105 50358105 C T PTOV1 Missense_Mutation p.P137L 0.24 deleterious(0) probably_damaging(0.986) TCGA-33-4582-01 19 51329905 51329905 G A KLK15 Missense_Mutation p.A197V 0.29 tolerated(1) benign(0.005) TCGA-33-4582-01 19 51961567 51961567 A T SIGLEC8 Missense_Mutation p.D25E 0.20 tolerated(1) benign(0.003) TCGA-33-4582-01 19 58152335 58152335 G A ZNF211 Missense_Mutation p.A226T 0.22 tolerated(0.09) benign(0.164) TCGA-33-4582-01 19 5831879 5831879 T A FUT6 Missense_Mutation p.M234L 0.27 tolerated(1) benign(0.139) TCGA-33-4582-01 19 9869345 9869345 G A ZNF846 Silent p.H136H 0.30 TCGA-33-4582-01 1 153507098 153507098 T C S100A6 3'UTR 0.19 TCGA-33-4582-01 1 153941878 153941878 G T CREB3L4 Missense_Mutation p.A164S 0.29 tolerated(0.39) benign(0.066) TCGA-33-4582-01 1 157771861 157771861 G T FCRL1 Missense_Mutation p.H244N 0.13 deleterious(0) probably_damaging(0.969) TCGA-33-4582-01 1 16255242 16255242 C T SPEN Missense_Mutation p.S836L 0.27 probably_damaging(0.989) TCGA-33-4582-01 1 16890432 16890432 G A NBPF1 3'UTR 0.07 TCGA-33-4582-01 1 171756950 171756950 G A METTL13 Missense_Mutation p.D397N 0.22 deleterious(0.01) benign(0.008) TCGA-33-4582-01 1 17345379 17345379 A C SDHB Silent p.V280V 0.29 TCGA-33-4582-01 1 17668535 17668535 C T PADI4 Silent p.Y250Y 0.22 TCGA-33-4582-01 1 182775341 182775341 G T NPL Missense_Mutation p.E68D 0.16 deleterious(0.03) benign(0.33) TCGA-33-4582-01 1 202572184 202572184 C T SYT2 Silent p.E136E 0.19 TCGA-33-4582-01 1 202574736 202574736 T G SYT2 Silent p.I55I 0.21 TCGA-33-4582-01 1 205033505 205033505 C A CNTN2 Silent p.R432R 0.40 TCGA-33-4582-01 1 205813990 205813990 C A PM20D1 Missense_Mutation p.R175S 0.25 deleterious(0.04) possibly_damaging(0.673) TCGA-33-4582-01 1 208257880 208257880 C T PLXNA2 Missense_Mutation p.G715R 0.12 deleterious(0.01) benign(0.014) TCGA-33-4582-01 1 211093061 211093061 G A KCNH1 Silent p.L461L 0.22 TCGA-33-4582-01 1 215848418 215848418 G A USH2A Nonsense_Mutation p.Q4279* 0.15 TCGA-33-4582-01 1 226567635 226567635 C T PARP1 Missense_Mutation p.V511I 0.14 tolerated(0.35) benign(0.001) TCGA-33-4582-01 1 233807193 233807193 G A KCNK1 Missense_Mutation p.G310S 0.18 tolerated(1) benign(0) TCGA-33-4582-01 1 241669322 241669322 T C FH Silent p.A295A 0.36 TCGA-33-4582-01 1 248722769 248722769 G A OR2T29 Silent p.A8A 0.17 TCGA-33-4582-01 1 28233712 28233712 C A RPA2 Missense_Mutation p.G67W 0.21 deleterious(0.01) probably_damaging(0.966) TCGA-33-4582-01 1 32154546 32154546 C A COL16A1 Silent p.S561S 0.25 TCGA-33-4582-01 1 32193848 32193848 G C BAI2 Missense_Mutation p.L1484V 0.18 deleterious(0.02) probably_damaging(0.996) TCGA-33-4582-01 1 43200882 43200882 G A CLDN19 Intron 0.38 TCGA-33-4582-01 1 63836588 63836588 G A ALG6 5'UTR 0.21 TCGA-33-4582-01 1 70484480 70484480 C A LRRC7 Missense_Mutation p.Q429K 0.14 deleterious(0) probably_damaging(0.93) TCGA-33-4582-01 20 23016254 23016254 C T SSTR4 Missense_Mutation p.A45V 0.21 tolerated(0.22) benign(0.001) TCGA-33-4582-01 20 31876669 31876669 G A BPIFB1 Missense_Mutation p.V80I 0.24 tolerated(1) benign(0.007) TCGA-33-4582-01 20 31894731 31894731 G T BPIFB1 Missense_Mutation p.G445W 0.14 deleterious(0) probably_damaging(1) TCGA-33-4582-01 20 35381248 35381248 C A DSN1 Missense_Mutation p.K338N 0.19 tolerated(0.06) benign(0.212) TCGA-33-4582-01 20 37634944 37634944 G A DHX35 Silent p.Q389Q 0.63 TCGA-33-4582-01 20 47682981 47682981 G A CSE1L Missense_Mutation p.R137H 0.66 tolerated(0.16) benign(0.003) TCGA-33-4582-01 20 60969244 60969244 A G CABLES2 Missense_Mutation p.L228P 0.10 deleterious(0) probably_damaging(0.996) TCGA-33-4582-01 22 32174082 32174082 C G DEPDC5 Intron 0.18 TCGA-33-4582-01 22 36710337 36710337 G C MYH9 Missense_Mutation p.I469M 0.31 possibly_damaging(0.872) TCGA-33-4582-01 22 38121714 38121714 C T TRIOBP Missense_Mutation p.P1051S 0.12 tolerated_low_confidence(1) benign(0) TCGA-33-4582-01 22 45802340 45802340 C A SMC1B Splice_Site p.X205_splice 0.10 TCGA-33-4582-01 2 103040576 103040576 T A IL18RAP Missense_Mutation p.C126S 0.10 deleterious(0) probably_damaging(0.989) TCGA-33-4582-01 2 112636448 112636448 C A ANAPC1 Missense_Mutation p.G105V 0.18 deleterious(0.01) probably_damaging(1) TCGA-33-4582-01 2 138030207 138030207 G A THSD7B Missense_Mutation p.D791N 0.39 tolerated(0.4) possibly_damaging(0.728) TCGA-33-4582-01 2 141819824 141819824 G A LRP1B Silent p.D344D 0.08 TCGA-33-4582-01 2 15760450 15760450 A T DDX1 Missense_Mutation p.H442L 0.18 deleterious(0) probably_damaging(1) TCGA-33-4582-01 2 166019318 166019318 C - SCN3A Frame_Shift_Del p.A239Pfs*2 0.28 TCGA-33-4582-01 2 166758329 166758329 C G TTC21B Missense_Mutation p.C887S 0.46 deleterious(0.03) probably_damaging(1) TCGA-33-4582-01 2 167141004 167141004 G A SCN9A Silent p.L645L 0.22 TCGA-33-4582-01 2 169792886 169792886 T G ABCB11 Missense_Mutation p.M890L 0.12 tolerated(0.41) benign(0.001) TCGA-33-4582-01 2 170493661 170493661 A T PPIG Silent p.S631S 0.10 TCGA-33-4582-01 2 172216968 172216968 C G METTL8 Missense_Mutation p.E67Q 0.19 deleterious(0.03) possibly_damaging(0.786) TCGA-33-4582-01 2 177036830 177036830 T A HOXD3 Missense_Mutation p.L376Q 0.09 deleterious(0) probably_damaging(0.973) TCGA-33-4582-01 2 179413936 179413936 G A TTN Missense_Mutation p.A30806V 0.40 TCGA-33-4582-01 2 179471837 179471837 T C TTN Missense_Mutation p.Q17831R 0.08 TCGA-33-4582-01 2 1906962 1906962 T G MYT1L Missense_Mutation p.Y639S 0.13 deleterious(0) probably_damaging(0.98) TCGA-33-4582-01 2 1926988 1926988 C G MYT1L Missense_Mutation p.E185Q 0.14 tolerated(0.1) probably_damaging(0.999) TCGA-33-4582-01 2 196765213 196765213 G T DNAH7 Silent p.L1447L 0.16 TCGA-33-4582-01 2 25966231 25966231 G A ASXL2 Missense_Mutation p.A992V 0.54 tolerated(0.19) benign(0.008) TCGA-33-4582-01 2 27799449 27799449 A C C2orf16 Missense_Mutation p.T4P 0.13 deleterious(0.04) benign(0.058) TCGA-33-4582-01 2 29093054 29093054 C T TRMT61B Silent p.E30E 0.10 TCGA-33-4582-01 2 32836642 32836642 C G BIRC6 Missense_Mutation p.A4796G 0.58 probably_damaging(0.972) TCGA-33-4582-01 2 50573836 50573836 G T NRXN1 Intron 0.21 TCGA-33-4582-01 2 51253554 51253554 G A NRXN1 Nonsense_Mutation p.Q276* 0.11 TCGA-33-4582-01 2 58366957 58366957 A C VRK2 Missense_Mutation p.N338T 0.17 tolerated(0.55) benign(0.004) TCGA-33-4582-01 2 64331869 64331869 G C PELI1 Missense_Mutation p.T56S 0.15 tolerated(0.61) benign(0.082) TCGA-33-4582-01 2 74474421 74474421 C T SLC4A5 Missense_Mutation p.D601N 0.11 tolerated(0.07) probably_damaging(1) TCGA-33-4582-01 2 89545004 89545004 G A IGKV2-30 Missense_Mutation p.P16S 0.19 tolerated(0.37) benign(0.044) TCGA-33-4582-01 2 96799269 96799269 C T ASTL Missense_Mutation p.R117H 0.18 deleterious(0.01) probably_damaging(0.973) TCGA-33-4582-01 2 99136497 99136497 A G INPP4A 5'UTR 0.25 TCGA-33-4582-01 3 101044876 101044876 G T SENP7 Missense_Mutation p.P1022T 0.12 deleterious(0) probably_damaging(0.985) TCGA-33-4582-01 3 101369869 101369869 T C ZBTB11 3'UTR 0.43 TCGA-33-4582-01 3 107492179 107492179 A C BBX Missense_Mutation p.K537N 0.10 deleterious(0.02) probably_damaging(0.996) TCGA-33-4582-01 3 108278663 108278663 C T KIAA1524 Missense_Mutation p.A652T 0.11 tolerated(0.05) possibly_damaging(0.486) TCGA-33-4582-01 3 115395071 115395072 - G GAP43 Frame_Shift_Ins p.E119Rfs*17 0.19 TCGA-33-4582-01 3 121151797 121151797 G A POLQ Silent p.L2543L 0.09 TCGA-33-4582-01 3 129207101 129207101 C T IFT122 Missense_Mutation p.S669F 0.24 deleterious(0) probably_damaging(0.998) TCGA-33-4582-01 3 130287388 130287388 T A COL6A6 Missense_Mutation p.F781I 0.18 deleterious(0) probably_damaging(0.999) TCGA-33-4582-01 3 148925286 148925286 G A CP Silent p.H300H 0.19 TCGA-33-4582-01 3 15118588 15118588 G C ZFYVE20 Nonsense_Mutation p.S361* 0.26 TCGA-33-4582-01 3 155211982 155211982 G A PLCH1 Silent p.F698F 0.21 TCGA-33-4582-01 3 170732477 170732477 T C SLC2A2 Missense_Mutation p.D51G 0.18 tolerated(0.08) benign(0.297) TCGA-33-4582-01 3 171330190 171330190 C A PLD1 Nonsense_Mutation p.G921* 0.13 TCGA-33-4582-01 3 180334415 180334415 G C CCDC39 Missense_Mutation p.D825E 0.08 deleterious(0) probably_damaging(0.998) TCGA-33-4582-01 3 192517160 192517160 C T MB21D2 Missense_Mutation p.C164Y 0.10 deleterious(0) probably_damaging(0.989) TCGA-33-4582-01 3 40286056 40286056 G A MYRIP Silent p.Q740Q 0.24 TCGA-33-4582-01 3 42680326 42680326 G C NKTR Missense_Mutation p.V1044L 0.09 tolerated_low_confidence(0.21) benign(0.026) TCGA-33-4582-01 3 44952824 44952824 G A TGM4 Silent p.L613L 0.31 TCGA-33-4582-01 3 51517747 51517747 G C VPRBP Missense_Mutation p.P33R 0.26 deleterious(0.01) possibly_damaging(0.487) TCGA-33-4582-01 3 52259585 52259585 G A TLR9 5'UTR 0.65 TCGA-33-4582-01 3 58486964 58486964 G A KCTD6 Missense_Mutation p.D107N 0.23 tolerated(0.14) benign(0.004) TCGA-33-4582-01 3 62477987 62477987 C T CADPS Silent p.L954L 0.53 TCGA-33-4582-01 3 97806143 97806143 G C OR5AC2 Missense_Mutation p.G43R 0.12 deleterious(0) probably_damaging(1) TCGA-33-4582-01 3 97806144 97806144 G T OR5AC2 Missense_Mutation p.G43V 0.13 deleterious(0) probably_damaging(1) TCGA-33-4582-01 3 98002381 98002381 T C OR5H2 Missense_Mutation p.V217A 0.32 tolerated(0.17) benign(0.013) TCGA-33-4582-01 3 99513493 99513509 GCGCCAGGTGTAAAGGG - COL8A1 Frame_Shift_Del p.P251Sfs*105 0.12 TCGA-33-4582-01 4 106534556 106534556 G T ARHGEF38 Missense_Mutation p.V134L 0.23 tolerated(0.09) benign(0.211) TCGA-33-4582-01 4 109543360 109543360 G T RPL34 Silent p.G55G 0.25 TCGA-33-4582-01 4 114279464 114279464 G C ANK2 Silent p.T3230T 0.24 TCGA-33-4582-01 4 121698419 121698419 C A PRDM5 Missense_Mutation p.K487N 0.31 deleterious(0) probably_damaging(0.926) TCGA-33-4582-01 4 187539071 187539071 G A FAT1 Missense_Mutation p.S2890L 0.37 benign(0.41) TCGA-33-4582-01 4 42581886 42581886 C G ATP8A1 Missense_Mutation p.G315A 0.19 tolerated(0.36) probably_damaging(0.999) TCGA-33-4582-01 4 71670132 71670132 A C RUFY3 Missense_Mutation p.K573T 0.22 deleterious(0) benign(0.067) TCGA-33-4582-01 5 13841798 13841798 G C DNAH5 Intron 0.11 TCGA-33-4582-01 5 13841814 13841814 G A DNAH5 Missense_Mutation p.S1824F 0.11 benign(0) TCGA-33-4582-01 5 140215054 140215054 C T PCDHA7 Silent p.D362D 0.24 TCGA-33-4582-01 5 1406353 1406353 T A SLC6A3 Missense_Mutation p.S517C 0.48 deleterious(0) possibly_damaging(0.759) TCGA-33-4582-01 5 151784573 151784573 G A NMUR2 Silent p.A34A 0.26 TCGA-33-4582-01 5 154275876 154275876 C - GEMIN5 Frame_Shift_Del p.E1125Sfs*36 0.23 TCGA-33-4582-01 5 180660676 180660676 C T TRIM41 Missense_Mutation p.P402S 0.06 tolerated(0.9) benign(0.1) TCGA-33-4582-01 5 33455798 33455798 G T TARS Missense_Mutation p.A261S 0.36 deleterious(0) benign(0) TCGA-33-4582-01 5 33630995 33630995 G A ADAMTS12 Nonsense_Mutation p.R638* 0.07 TCGA-33-4582-01 5 35694425 35694425 A T SPEF2 Silent p.S645S 0.12 TCGA-33-4582-01 5 71490073 71490073 C G MAP1B Silent p.L297L 0.51 TCGA-33-4582-01 5 9066614 9066614 G C SEMA5A Missense_Mutation p.P740A 0.10 deleterious(0.03) benign(0.04) TCGA-33-4582-01 5 9629815 9629815 G A TAS2R1 Silent p.V110V 0.21 TCGA-33-4582-01 6 101847225 101847225 G A GRIK2 Silent p.L24L 0.22 TCGA-33-4582-01 6 128150678 128150678 C T THEMIS Missense_Mutation p.D218N 0.18 tolerated(1) benign(0.032) TCGA-33-4582-01 6 144086522 144086522 G T PHACTR2 Silent p.G273G 0.21 TCGA-33-4582-01 6 147637480 147637480 A T STXBP5 Missense_Mutation p.Q580L 0.19 tolerated(0.36) benign(0.011) TCGA-33-4582-01 6 152777154 152777154 C T SYNE1 Missense_Mutation p.C865Y 0.28 possibly_damaging(0.724) TCGA-33-4582-01 6 160237602 160237602 C T PNLDC1 Missense_Mutation p.A352V 0.21 deleterious(0) possibly_damaging(0.888) TCGA-33-4582-01 6 28327435 28327435 C T ZKSCAN3 Silent p.V24V 0.62 TCGA-33-4582-01 6 30035099 30035099 G C PPP1R11 5'UTR 0.21 TCGA-33-4582-01 6 51640615 51640615 C A PKHD1 Nonsense_Mutation p.G2849* 0.36 TCGA-33-4582-01 6 88125496 88125496 G T C6ORF165 Nonsense_Mutation p.E126* 0.25 TCGA-33-4582-01 6 90390407 90390407 G A MDN1 Missense_Mutation p.R4056C 0.19 probably_damaging(0.971) TCGA-33-4582-01 7 117825716 117825716 G C NAA38 Missense_Mutation p.A14P 0.09 tolerated(0.2) benign(0.262) TCGA-33-4582-01 7 122111574 122111574 A G CADPS2 Missense_Mutation p.C681R 0.09 deleterious(0) possibly_damaging(0.881) TCGA-33-4582-01 7 128413738 128413738 A C OPN1SW Missense_Mutation p.Y298D 0.20 deleterious(0) probably_damaging(0.994) TCGA-33-4582-01 7 141727446 141727446 C T MGAM Missense_Mutation p.L378F 0.13 deleterious(0) probably_damaging(0.998) TCGA-33-4582-01 7 150493564 150493564 C T TMEM176B Missense_Mutation p.A32T 0.28 deleterious(0.04) benign(0.049) TCGA-33-4582-01 7 1516229 1516229 C A INTS1 Missense_Mutation p.G1710W 0.36 deleterious(0) probably_damaging(0.987) TCGA-33-4582-01 7 20197949 20197949 C A MACC1 Nonsense_Mutation p.E679* 0.13 TCGA-33-4582-01 7 30921895 30921895 G T FAM188B Missense_Mutation p.D691Y 0.27 deleterious(0) possibly_damaging(0.595) TCGA-33-4582-01 7 31611726 31611726 C T CCDC129 Nonsense_Mutation p.Q133* 0.13 TCGA-33-4582-01 7 6189570 6189570 G A USP42 Silent p.P581P 0.06 TCGA-33-4582-01 7 72717572 72717572 C G NSUN5 Intron 0.11 TCGA-33-4582-01 7 76026960 76026960 G A SRCRB4D Missense_Mutation p.T248I 0.43 deleterious(0) possibly_damaging(0.903) TCGA-33-4582-01 7 934986 934986 G C GET4 Missense_Mutation p.S304T 0.27 tolerated(0.14) benign(0.222) TCGA-33-4582-01 7 97822522 97822522 G T LMTK2 Silent p.G915G 0.12 TCGA-33-4582-01 7 99023070 99023070 C A ATP5J2-PTCD1 Missense_Mutation p.R411L 0.27 tolerated(0.16) benign(0.009) TCGA-33-4582-01 7 99091835 99091835 C A ZNF394 Missense_Mutation p.D335Y 0.29 deleterious(0.01) benign(0.082) TCGA-33-4582-01 8 104898313 104898313 C A RIMS2 Missense_Mutation p.P496T 0.22 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-33-4582-01 8 113314135 113314135 G T CSMD3 Nonsense_Mutation p.S2776* 0.30 TCGA-33-4582-01 8 118184797 118184797 G A SLC30A8 Silent p.V329V 0.17 TCGA-33-4582-01 8 35606179 35606179 A T UNC5D Missense_Mutation p.H634L 0.08 tolerated(0.08) benign(0.003) TCGA-33-4582-01 8 37556171 37556171 C A ZNF703 Silent p.A584A 0.08 TCGA-33-4582-01 8 41834699 41834699 T C KAT6A Missense_Mutation p.N397S 0.04 benign(0.008) TCGA-33-4582-01 8 52366245 52366245 G T PXDNL Silent p.I361I 0.22 TCGA-33-4582-01 8 53573547 53573547 T C RB1CC1 Silent p.K522K 0.17 TCGA-33-4582-01 8 54967634 54967634 C G LYPLA1 Missense_Mutation p.G116R 0.05 deleterious(0.01) probably_damaging(0.997) TCGA-33-4582-01 8 68087623 68087623 G C CSPP1 Missense_Mutation p.E1016Q 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-33-4582-01 8 96259840 96259840 C T C8orf37 3'UTR 0.14 TCGA-33-4582-01 9 101801014 101801014 C T COL15A1 Missense_Mutation p.P825L 0.19 deleterious(0.01) benign(0.419) TCGA-33-4582-01 9 119858349 119858349 T A ASTN2 Missense_Mutation p.Q366L 0.14 deleterious_low_confidence(0.02) unknown(0) TCGA-33-4582-01 9 22451172 22451172 G T DMRTA1 Silent p.G259G 0.27 TCGA-33-4582-01 9 35100009 35100009 C A STOML2 3'UTR 0.19 TCGA-33-4582-01 X 125685917 125685917 G T DCAF12L1 Missense_Mutation p.D225E 0.58 tolerated(0.19) benign(0.125) TCGA-33-4582-01 X 17819468 17819468 C A RAI2 Missense_Mutation p.L221F 0.27 tolerated(0.07) unknown(0) TCGA-33-4582-01 X 30695509 30695509 C T GK Nonsense_Mutation p.Q93* 0.73 TCGA-33-4582-01 X 50052552 50052552 A T CCNB3 Silent p.P461P 0.22 TCGA-33-4582-01 X 5821715 5821715 G A NLGN4X Missense_Mutation p.T335I 0.24 deleterious(0.01) benign(0.117) TCGA-33-4582-01 X 73812015 73812015 C A RLIM Missense_Mutation p.V379F 0.36 deleterious(0) unknown(0) TCGA-33-4583-01 10 105893440 105893440 C G WDR96 Missense_Mutation p.E1512Q 0.19 tolerated(0.08) probably_damaging(0.99) TCGA-33-4583-01 10 127438068 127438068 G A EDRF1 Missense_Mutation p.D1071N 0.55 deleterious(0.01) possibly_damaging(0.877) TCGA-33-4583-01 10 129905843 129905843 C G MKI67 Missense_Mutation p.D1421H 0.61 tolerated(0.19) benign(0.015) TCGA-33-4583-01 10 17275867 17275867 T A VIM Silent p.R273R 0.71 TCGA-33-4583-01 10 18690925 18690925 C - CACNB2 Frame_Shift_Del p.R96Afs*65 0.36 TCGA-33-4583-01 10 23290985 23290985 G T ARMC3 Splice_Site p.X521_splice 0.58 TCGA-33-4583-01 10 45467291 45467291 C A RASSF4 Missense_Mutation p.R45S 0.68 tolerated(0.07) benign(0.241) TCGA-33-4583-01 10 62652608 62652608 C A RHOBTB1 Missense_Mutation p.D148Y 0.67 tolerated(0.23) probably_damaging(1) TCGA-33-4583-01 10 7409832 7409832 C A SFMBT2 Missense_Mutation p.S72I 0.39 deleterious(0) probably_damaging(0.994) TCGA-33-4583-01 10 84745017 84745017 G T NRG3 Nonsense_Mutation p.E583* 0.60 TCGA-33-4583-01 10 89725055 89725055 C G PTEN Nonsense_Mutation p.Y346* 0.69 TCGA-33-4583-01 11 101834490 101834490 C T KIAA1377 Silent p.T908T 0.33 TCGA-33-4583-01 11 105924568 105924568 C A KBTBD3 Missense_Mutation p.G283V 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-33-4583-01 11 10827516 10827516 G A EIF4G2 Silent p.S62S 0.31 TCGA-33-4583-01 11 113283468 113283468 G T DRD2 Missense_Mutation p.H316Q 0.32 tolerated(0.58) benign(0.003) TCGA-33-4583-01 11 114271399 114271399 G T RBM7 Silent p.G2G 0.23 TCGA-33-4583-01 11 117784529 117784529 A G TMPRSS13 Missense_Mutation p.Y258H 0.32 tolerated(0.1) benign(0.031) TCGA-33-4583-01 11 118471514 118471514 A T ARCN1 3'UTR 0.33 TCGA-33-4583-01 11 123516382 123516382 G A SCN3B Silent p.R44R 0.40 TCGA-33-4583-01 11 123900798 123900798 G T OR10G8 Missense_Mutation p.V157F 0.37 tolerated(0.32) benign(0.151) TCGA-33-4583-01 11 124189919 124189919 C G OR8D2 Missense_Mutation p.V59L 0.27 deleterious(0.02) benign(0.001) TCGA-33-4583-01 11 124440378 124440378 C A OR8A1 Missense_Mutation p.D138E 0.24 deleterious(0) probably_damaging(0.999) TCGA-33-4583-01 11 124748513 124748513 T C ROBO3 Silent p.P1118P 0.29 TCGA-33-4583-01 11 1265143 1265143 C G MUC5B Missense_Mutation p.R2345G 0.29 unknown(0) TCGA-33-4583-01 11 128426297 128426297 G C ETS1 Missense_Mutation p.R35G 0.48 tolerated_low_confidence(0.32) benign(0.012) TCGA-33-4583-01 11 1651512 1651512 G T KRTAP5-5 Missense_Mutation p.G148C 0.36 tolerated_low_confidence(0.25) unknown(0) TCGA-33-4583-01 11 17530997 17530997 G T USH1C Missense_Mutation p.T640K 0.31 tolerated_low_confidence(0.59) benign(0.004) TCGA-33-4583-01 11 17793277 17793277 C A KCNC1 Missense_Mutation p.H212Q 0.31 deleterious(0.03) probably_damaging(0.991) TCGA-33-4583-01 11 22844597 22844597 G C SVIP 3'UTR 0.37 TCGA-33-4583-01 11 30926552 30926552 C A DCDC1 Missense_Mutation p.G1422W 0.32 deleterious(0) probably_damaging(0.984) TCGA-33-4583-01 11 31827968 31827968 T C PAX6 5'UTR 0.28 TCGA-33-4583-01 11 32460662 32460662 C G WT1 5'Flank 0.34 TCGA-33-4583-01 11 35313909 35313909 A C SLC1A2 Missense_Mutation p.V339G 0.30 deleterious(0.02) possibly_damaging(0.456) TCGA-33-4583-01 11 36615433 36615433 C A RAG2 Missense_Mutation p.G96W 0.26 deleterious(0) probably_damaging(0.999) TCGA-33-4583-01 11 4154832 4154832 G T RRM1 Missense_Mutation p.G649C 0.30 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-33-4583-01 11 43411371 43411371 G T TTC17 Missense_Mutation p.S140I 0.37 tolerated(0.12) benign(0.027) TCGA-33-4583-01 11 47660338 47660338 G A MTCH2 Silent p.I64I 0.21 TCGA-33-4583-01 11 4790700 4790700 T A OR51F1 Missense_Mutation p.M150L 0.40 tolerated(0.09) benign(0.012) TCGA-33-4583-01 11 48267239 48267239 G T OR4X2 Missense_Mutation p.G195V 0.32 deleterious(0) probably_damaging(0.939) TCGA-33-4583-01 11 48510770 48510770 G C OR4A47 Silent p.L142L 0.37 TCGA-33-4583-01 11 4936228 4936228 A T OR51G2 Silent p.S222S 0.26 TCGA-33-4583-01 11 49598044 49598044 C A RP11-707M1.1 RNA 0.41 TCGA-33-4583-01 11 49974765 49974765 C A OR4C13 Missense_Mutation p.P264H 0.31 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-33-4583-01 11 5221333 5221333 C A OR51V1 Missense_Mutation p.D200Y 0.35 deleterious(0) probably_damaging(0.994) TCGA-33-4583-01 11 5270650 5270650 T C HBG1 Missense_Mutation p.Q88R 0.09 deleterious(0.05) benign(0.026) TCGA-33-4583-01 11 5270651 5270651 G T HBG1 Missense_Mutation p.Q88K 0.07 tolerated(1) benign(0.001) TCGA-33-4583-01 11 5275574 5275574 T C HBG2 Missense_Mutation p.Q88R 0.15 tolerated(0.06) benign(0.052) TCGA-33-4583-01 11 5275575 5275575 G T HBG2 Missense_Mutation p.Q88K 0.15 tolerated(1) benign(0.001) TCGA-33-4583-01 11 55135439 55135439 C T OR4A15 Missense_Mutation p.S27L 0.39 tolerated_low_confidence(0.07) benign(0.002) TCGA-33-4583-01 11 55135835 55135835 A G OR4A15 Missense_Mutation p.H159R 0.06 deleterious_low_confidence(0.01) benign(0.286) TCGA-33-4583-01 11 55321947 55321947 G T OR4C15 Missense_Mutation p.M55I 0.29 deleterious_low_confidence(0.01) probably_damaging(0.971) TCGA-33-4583-01 11 557899 557899 C G C11orf35 Missense_Mutation p.Q180H 0.24 deleterious(0.01) probably_damaging(0.956) TCGA-33-4583-01 11 55927225 55927225 G C OR8K5 Nonsense_Mutation p.S190* 0.39 TCGA-33-4583-01 11 56468503 56468504 - T OR9G1 Frame_Shift_Ins p.A215Gfs*50 0.21 TCGA-33-4583-01 11 56510514 56510514 G T OR9G4 Silent p.S258S 0.31 TCGA-33-4583-01 11 57886368 57886368 G T OR9I1 Silent p.P183P 0.34 TCGA-33-4583-01 11 58189970 58189970 G A OR5B2 Silent p.F255F 0.25 TCGA-33-4583-01 11 5969255 5969255 C T OR56A3 Nonsense_Mutation p.R227* 0.30 TCGA-33-4583-01 11 5969377 5969377 G T OR56A3 Silent p.V267V 0.27 TCGA-33-4583-01 11 6007834 6007834 C A OR52L1 Missense_Mutation p.E109D 0.38 deleterious(0.03) benign(0.006) TCGA-33-4583-01 11 60886821 60886821 C A CD5 Silent p.T193T 0.30 TCGA-33-4583-01 11 60893276 60893276 A G CD5 Missense_Mutation p.S485G 0.35 deleterious(0.01) probably_damaging(0.977) TCGA-33-4583-01 11 62293633 62293633 T A AHNAK Silent p.A2752A 0.38 TCGA-33-4583-01 11 62653041 62653041 G A SLC3A2 Silent p.G470G 0.27 TCGA-33-4583-01 11 65315613 65315613 C T LTBP3 Intron 0.33 TCGA-33-4583-01 11 65384478 65384478 C A PCNXL3 Missense_Mutation p.P113T 0.38 tolerated(0.38) benign(0.008) TCGA-33-4583-01 11 6651098 6651098 C A DCHS1 Nonsense_Mutation p.E1614* 0.30 TCGA-33-4583-01 11 67799650 67799650 G A NDUFS8 Missense_Mutation p.R11Q 0.09 tolerated_low_confidence(0.13) benign(0) TCGA-33-4583-01 11 70172916 70172916 G A PPFIA1 Missense_Mutation p.V308I 0.34 tolerated(0.2) benign(0.004) TCGA-33-4583-01 11 727013 727013 G T EPS8L2 3'UTR 0.38 TCGA-33-4583-01 11 73584487 73584487 C T COA4 Intron 0.45 TCGA-33-4583-01 11 73670544 73670544 A T DNAJB13 Nonsense_Mutation p.K60* 0.35 TCGA-33-4583-01 11 74053659 74053659 C G PGM2L1 Missense_Mutation p.L493F 0.31 tolerated(0.25) possibly_damaging(0.544) TCGA-33-4583-01 11 74914123 74914123 C A SLCO2B1 Intron 0.39 TCGA-33-4583-01 11 76063707 76063707 T C PRKRIR Missense_Mutation p.K163E 0.29 deleterious(0.01) possibly_damaging(0.84) TCGA-33-4583-01 11 76063827 76063827 A C PRKRIR Missense_Mutation p.S123A 0.23 tolerated(0.84) benign(0.001) TCGA-33-4583-01 11 7960523 7960523 G A OR10A3 Missense_Mutation p.P182L 0.37 deleterious(0.02) probably_damaging(0.928) TCGA-33-4583-01 11 82893032 82893032 G C PCF11 Missense_Mutation p.G1435A 0.24 tolerated(0.52) probably_damaging(0.999) TCGA-33-4583-01 11 83173090 83173090 C T DLG2 Missense_Mutation p.D926N 0.24 deleterious(0) benign(0.305) TCGA-33-4583-01 11 84028040 84028040 G T DLG2 Intron 0.30 TCGA-33-4583-01 11 95712854 95712854 C A MAML2 Missense_Mutation p.R910L 0.37 unknown(0) TCGA-33-4583-01 12 100660851 100660851 C A DEPDC4 Missense_Mutation p.V2L 0.23 deleterious_low_confidence(0) benign(0.097) TCGA-33-4583-01 12 104077060 104077060 C A STAB2 Silent p.T961T 0.27 TCGA-33-4583-01 12 109644571 109644571 G A ACACB Silent p.E990E 0.07 TCGA-33-4583-01 12 112182553 112182553 G C ACAD10 Missense_Mutation p.E638D 0.32 tolerated(0.22) probably_damaging(0.98) TCGA-33-4583-01 12 11546386 11546389 CCTC - PRB2 Frame_Shift_Del p.G208Afs*222 0.23 TCGA-33-4583-01 12 118639252 118639252 C A TAOK3 Missense_Mutation p.R279L 0.36 deleterious(0) benign(0.005) TCGA-33-4583-01 12 121789999 121789999 C A ANAPC5 Nonsense_Mutation p.E49* 0.35 TCGA-33-4583-01 12 121958890 121958890 G A KDM2B Silent p.A315A 0.23 TCGA-33-4583-01 12 124812033 124812033 T C NCOR2 Missense_Mutation p.N2369D 0.34 possibly_damaging(0.889) TCGA-33-4583-01 12 132549312 132549312 C T EP400 Nonsense_Mutation p.Q2812* 0.36 TCGA-33-4583-01 12 14628839 14628839 G A ATF7IP Missense_Mutation p.G960S 0.32 tolerated_low_confidence(0.16) unknown(0) TCGA-33-4583-01 12 16111227 16111227 A G DERA Missense_Mutation p.I79V 0.19 tolerated(0.66) benign(0.046) TCGA-33-4583-01 12 1943621 1943621 G T LRTM2 Missense_Mutation p.A283S 0.15 tolerated(0.5) benign(0.002) TCGA-33-4583-01 12 2058434 2058434 C A DCP1B Missense_Mutation p.A531S 0.36 tolerated(0.23) benign(0.008) TCGA-33-4583-01 12 330114 330114 C T SLC6A13 Silent p.%3D 0.20 TCGA-33-4583-01 12 40703009 40703009 A G LRRK2 Missense_Mutation p.M1431V 0.29 tolerated(0.07) benign(0.329) TCGA-33-4583-01 12 43793012 43793012 T C ADAMTS20 Missense_Mutation p.R1437G 0.17 tolerated(0.32) benign(0.026) TCGA-33-4583-01 12 43826171 43826171 C A ADAMTS20 Missense_Mutation p.R1011L 0.33 tolerated(0.08) benign(0.111) TCGA-33-4583-01 12 43847811 43847811 A G ADAMTS20 Silent p.R553R 0.37 TCGA-33-4583-01 12 4736573 4736573 C T AKAP3 Missense_Mutation p.D499N 0.53 tolerated(0.39) possibly_damaging(0.688) TCGA-33-4583-01 12 48378344 48378344 A T COL2A1 Silent p.G624G 0.15 TCGA-33-4583-01 12 4920559 4920559 C T KCNA6 Missense_Mutation p.A451V 0.14 deleterious(0) probably_damaging(0.998) TCGA-33-4583-01 12 53700773 53700773 G T C12orf10 Missense_Mutation p.R324L 0.33 deleterious(0) possibly_damaging(0.5) TCGA-33-4583-01 12 54911595 54911595 T C NCKAP1L Missense_Mutation p.I404T 0.36 deleterious(0) possibly_damaging(0.756) TCGA-33-4583-01 12 64202735 64202735 G C TMEM5 Missense_Mutation p.E399Q 0.37 deleterious(0) probably_damaging(1) TCGA-33-4583-01 12 64860815 64860815 G C TBK1 Missense_Mutation p.E165Q 0.33 deleterious(0.01) possibly_damaging(0.903) TCGA-33-4583-01 12 7046110 7046110 A G ATN1 Silent p.Q560Q 0.18 TCGA-33-4583-01 12 70990077 70990077 C T PTPRB Missense_Mutation p.S337N 0.32 tolerated(1) benign(0.001) TCGA-33-4583-01 12 72287057 72287057 C G TBC1D15 Missense_Mutation p.Q204E 0.17 deleterious(0.03) probably_damaging(0.996) TCGA-33-4583-01 12 75804329 75804329 G T GLIPR1L2 Missense_Mutation p.G117V 0.35 deleterious(0) probably_damaging(1) TCGA-33-4583-01 12 7639362 7639362 T C CD163 Missense_Mutation p.R731G 0.20 deleterious(0) probably_damaging(0.989) TCGA-33-4583-01 12 81331545 81331545 G C LIN7A 5'UTR 0.80 TCGA-33-4583-01 12 8689780 8689780 C A CLEC4E Missense_Mutation p.W101C 0.38 deleterious(0) probably_damaging(0.998) TCGA-33-4583-01 12 94769671 94769671 C A CCDC41 Missense_Mutation p.L308F 0.28 deleterious(0) possibly_damaging(0.869) TCGA-33-4583-01 12 98850256 98850256 C A SLC9A7P1 RNA 0.07 TCGA-33-4583-01 13 101294518 101294518 T C TMTC4 Missense_Mutation p.I230V 0.11 tolerated(0.68) benign(0.002) TCGA-33-4583-01 13 103519152 103519152 G T BIVM-ERCC5 Missense_Mutation p.K1256N 0.33 deleterious(0) probably_damaging(0.978) TCGA-33-4583-01 13 111098175 111098175 G T COL4A2 Splice_Site p.X320_splice 0.49 TCGA-33-4583-01 13 113699173 113699173 G - MCF2L Intron 0.31 TCGA-33-4583-01 13 19997175 19997175 C A TPTE2 3'UTR 0.54 TCGA-33-4583-01 13 28240154 28240154 G C POLR1D 3'UTR 0.17 TCGA-33-4583-01 13 29608252 29608252 C A MTUS2 Silent p.S822S 0.39 TCGA-33-4583-01 13 30097544 30097544 C A SLC7A1 Missense_Mutation p.G303V 0.20 deleterious(0.03) probably_damaging(0.998) TCGA-33-4583-01 13 32920973 32920973 A G BRCA2 Missense_Mutation p.K2316R 0.17 deleterious(0.01) probably_damaging(0.946) TCGA-33-4583-01 13 32944672 32944672 T C BRCA2 Missense_Mutation p.I2822T 0.40 deleterious(0) possibly_damaging(0.853) TCGA-33-4583-01 13 43934079 43934079 C T ENOX1 Missense_Mutation p.G166D 0.16 deleterious(0) probably_damaging(0.997) TCGA-33-4583-01 13 70413282 70413282 G T KLHL1 Missense_Mutation p.L414I 0.34 tolerated(0.26) benign(0.145) TCGA-33-4583-01 13 70413283 70413283 G T KLHL1 Missense_Mutation p.D413E 0.35 deleterious(0.04) possibly_damaging(0.758) TCGA-33-4583-01 13 70514186 70514186 G T KLHL1 Missense_Mutation p.H334N 0.15 tolerated(0.18) benign(0.147) TCGA-33-4583-01 13 70514187 70514187 G T KLHL1 Silent p.A333A 0.16 TCGA-33-4583-01 13 77570191 77570191 G T CLN5 Missense_Mutation p.C214F 0.13 deleterious(0) probably_damaging(0.999) TCGA-33-4583-01 13 78173468 78173468 C A SCEL Missense_Mutation p.Q268K 0.35 tolerated(0.1) benign(0.108) TCGA-33-4583-01 13 78334967 78334967 A T SLAIN1 Silent p.P309P 0.44 TCGA-33-4583-01 13 79176554 79176554 T C POU4F1 Missense_Mutation p.N86D 0.33 deleterious_low_confidence(0) benign(0.341) TCGA-33-4583-01 13 88327907 88327907 G T SLITRK5 Missense_Mutation p.L88F 0.14 deleterious(0.02) possibly_damaging(0.751) TCGA-33-4583-01 13 92101100 92101100 G C GPC5 Missense_Mutation p.Q83H 0.10 tolerated(0.11) benign(0.046) TCGA-33-4583-01 13 95226965 95226965 T G TGDS 3'UTR 0.32 TCGA-33-4583-01 14 100789722 100789722 G T SLC25A47 5'UTR 0.14 TCGA-33-4583-01 14 101515907 101515907 G A MIR655 RNA 0.35 TCGA-33-4583-01 14 103915265 103915265 G T MARK3 Nonsense_Mutation p.E103* 0.16 TCGA-33-4583-01 14 104624146 104624146 C A KIF26A Missense_Mutation p.P264T 0.21 tolerated(0.12) benign(0.255) TCGA-33-4583-01 14 105070804 105070804 G T TMEM179 Missense_Mutation p.T92K 0.33 tolerated(0.33) possibly_damaging(0.457) TCGA-33-4583-01 14 106780969 106780969 C T IGHV4-28 5'UTR 0.29 TCGA-33-4583-01 14 20404190 20404190 G C OR4K1 Missense_Mutation p.R122T 0.32 deleterious(0) probably_damaging(0.998) TCGA-33-4583-01 14 20444145 20444145 C A OR4K15 Nonsense_Mutation p.Y156* 0.34 TCGA-33-4583-01 14 20482683 20482683 G T OR4K14 Missense_Mutation p.L224I 0.17 tolerated(0.46) benign(0.012) TCGA-33-4583-01 14 22192539 22192539 C A TRAV3 Missense_Mutation p.S105Y 0.31 deleterious(0) probably_damaging(0.994) TCGA-33-4583-01 14 22265876 22265876 C G TRAV8-1 Missense_Mutation p.F53L 0.17 deleterious(0.01) possibly_damaging(0.477) TCGA-33-4583-01 14 22363119 22363119 G C TRAV8-4 Missense_Mutation p.A84P 0.20 deleterious(0.01) probably_damaging(0.985) TCGA-33-4583-01 14 22539448 22539448 G T TRAV22 Missense_Mutation p.G103V 0.17 deleterious(0.03) benign(0.098) TCGA-33-4583-01 14 22749433 22749433 G C TRAV38-2DV8 Missense_Mutation p.D51H 0.33 tolerated(0.16) benign(0.361) TCGA-33-4583-01 14 24649345 24649359 TAGTAAACCACGTCG - REC8 3'UTR 0.52 TCGA-33-4583-01 14 28733812 28733812 G C BNIP3P1 RNA 0.19 TCGA-33-4583-01 14 31774224 31774224 C T RP11-596D21.1 3'Flank 0.34 TCGA-33-4583-01 14 36096989 36096989 G A RALGAPA1 Missense_Mutation p.P1549L 0.34 tolerated(0.06) probably_damaging(0.999) TCGA-33-4583-01 14 42356450 42356450 C G LRFN5 Missense_Mutation p.Q208E 0.32 deleterious(0.03) possibly_damaging(0.542) TCGA-33-4583-01 14 45658089 45658089 G T FANCM Nonsense_Mutation p.E1622* 0.39 TCGA-33-4583-01 14 50088626 50088626 G T MGAT2 Nonsense_Mutation p.E214* 0.41 TCGA-33-4583-01 14 51259444 51259444 C G NIN Missense_Mutation p.G141R 0.35 tolerated(0.39) possibly_damaging(0.681) TCGA-33-4583-01 14 51398409 51398409 C A PYGL Missense_Mutation p.K170N 0.11 tolerated(0.14) probably_damaging(0.999) TCGA-33-4583-01 14 58048010 58048010 G T SLC35F4 Silent p.S279S 0.17 TCGA-33-4583-01 14 58471896 58471896 C A C14orf37 Missense_Mutation p.G709V 0.37 deleterious(0) probably_damaging(0.979) TCGA-33-4583-01 14 60193708 60193708 G T RTN1 Missense_Mutation p.A565E 0.29 tolerated(0.8) benign(0.002) TCGA-33-4583-01 14 61115903 61115903 G T SIX1 Nonsense_Mutation p.S2* 0.16 TCGA-33-4583-01 14 68038551 68038551 G T PLEKHH1 Missense_Mutation p.R506L 0.22 deleterious(0.04) benign(0.049) TCGA-33-4583-01 14 69529207 69529207 T C DCAF5 Missense_Mutation p.N323S 0.49 tolerated(0.08) possibly_damaging(0.526) TCGA-33-4583-01 14 70989980 70989980 C A ADAM20 Missense_Mutation p.V549L 0.20 tolerated(0.1) benign(0.138) TCGA-33-4583-01 14 73957825 73957825 A T HEATR4 Intron 0.35 TCGA-33-4583-01 14 94469690 94469690 G T LINC00521 RNA 0.58 TCGA-33-4583-01 15 22709222 22709222 C A AC116165.1 5'Flank 0.28 TCGA-33-4583-01 15 23692321 23692321 G A GOLGA6L2 Missense_Mutation p.P3L 0.33 possibly_damaging(0.833) TCGA-33-4583-01 15 25307495 25307495 C A SNORD116-5 RNA 0.34 TCGA-33-4583-01 15 25417659 25417659 G T SNORD115-3 5'Flank 0.15 TCGA-33-4583-01 15 25494364 25494364 T C SNORD115-43 RNA 0.11 TCGA-33-4583-01 15 25616127 25616127 G A UBE3A Silent p.I401I 0.30 TCGA-33-4583-01 15 25924723 25924723 C A ATP10A Missense_Mutation p.R1422M 0.37 deleterious_low_confidence(0.01) benign(0.336) TCGA-33-4583-01 15 28196993 28196993 A C OCA2 Missense_Mutation p.L630V 0.20 deleterious(0.02) probably_damaging(0.986) TCGA-33-4583-01 15 28389936 28389936 C G HERC2 Missense_Mutation p.D3675H 0.22 possibly_damaging(0.803) TCGA-33-4583-01 15 30000937 30000937 T - TJP1 Frame_Shift_Del p.H1559Lfs*17 0.27 TCGA-33-4583-01 15 31234047 31234047 T C MTMR10 Missense_Mutation p.I654V 0.32 tolerated(0.32) benign(0.005) TCGA-33-4583-01 15 31294039 31294039 C T TRPM1 Missense_Mutation p.E1639K 0.25 deleterious_low_confidence(0.05) unknown(0) TCGA-33-4583-01 15 34049697 34049697 C A RYR3 Missense_Mutation p.Q2869K 0.31 possibly_damaging(0.844) TCGA-33-4583-01 15 34102748 34102748 C T RYR3 Silent p.S3365S 0.31 TCGA-33-4583-01 15 41192320 41192320 G T VPS18 Missense_Mutation p.R435L 0.36 tolerated(0.12) benign(0.239) TCGA-33-4583-01 15 43621185 43621185 T A LCMT2 Silent p.R501R 0.41 TCGA-33-4583-01 15 44876661 44876661 C G SPG11 Missense_Mutation p.K1739N 0.05 tolerated(0.09) benign(0.003) TCGA-33-4583-01 15 45409295 45409295 G A DUOXA2 Silent p.A187A 0.18 TCGA-33-4583-01 15 48543965 48543965 C A SLC12A1 Missense_Mutation p.P647Q 0.25 deleterious(0) probably_damaging(1) TCGA-33-4583-01 15 48780307 48780307 T A FBN1 Intron 0.29 TCGA-33-4583-01 15 49254801 49254801 T C SHC4 Missense_Mutation p.S138G 0.38 tolerated(0.38) benign(0.001) TCGA-33-4583-01 15 50271996 50271996 C A ATP8B4 Silent p.L284L 0.37 TCGA-33-4583-01 15 50549686 50549686 A C HDC Missense_Mutation p.M126R 0.33 deleterious(0) probably_damaging(0.951) TCGA-33-4583-01 15 51830482 51830482 C A DMXL2 Missense_Mutation p.D425Y 0.35 tolerated(0.16) benign(0.005) TCGA-33-4583-01 15 51830483 51830483 A C DMXL2 Missense_Mutation p.D424E 0.36 tolerated(0.8) benign(0.007) TCGA-33-4583-01 15 63125643 63125643 G T TLN2 Intron 0.43 TCGA-33-4583-01 15 63598027 63598027 G A APH1B 3'UTR 0.42 TCGA-33-4583-01 15 70976770 70976770 T A UACA Silent p.L206L 0.33 TCGA-33-4583-01 15 74627568 74627568 C A CCDC33 Intron 0.36 TCGA-33-4583-01 15 77450849 77450849 G A PEAK1 Silent p.N1109N 0.35 TCGA-33-4583-01 15 78466839 78466839 T C ACSBG1 Missense_Mutation p.N577S 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-33-4583-01 15 81271542 81271542 C T MESDC2 3'UTR 0.23 TCGA-33-4583-01 15 81627216 81627216 G - TMC3 Frame_Shift_Del p.N768Kfs*17 0.29 TCGA-33-4583-01 15 84558881 84558881 G T ADAMTSL3 Nonsense_Mutation p.E365* 0.33 TCGA-33-4583-01 15 85360218 85360218 G C ALPK3 Silent p.A47A 0.30 TCGA-33-4583-01 15 85619149 85619149 G T PDE8A Missense_Mutation p.R164M 0.28 deleterious(0) probably_damaging(0.969) TCGA-33-4583-01 15 90176085 90176085 G A KIF7 Missense_Mutation p.T954M 0.40 deleterious(0.02) possibly_damaging(0.762) TCGA-33-4583-01 15 91578522 91578522 G T AC068831.10 RNA 0.45 TCGA-33-4583-01 16 11369743 11369743 G - PRM2 3'UTR 0.18 TCGA-33-4583-01 16 1144031 1144031 C T C1QTNF8 Missense_Mutation p.V77I 0.39 tolerated(0.15) benign(0.146) TCGA-33-4583-01 16 1291668 1291668 G T TPSAB1 Missense_Mutation p.W156L 0.17 deleterious(0) probably_damaging(1) TCGA-33-4583-01 16 21210929 21210929 C A ZP2 Missense_Mutation p.C630F 0.27 deleterious(0) probably_damaging(0.998) TCGA-33-4583-01 16 28109799 28109799 G C XPO6 3'UTR 0.35 TCGA-33-4583-01 16 28970373 28970373 G T NFATC2IP Silent p.R351R 0.18 TCGA-33-4583-01 16 29675586 29675587 - A SPN Frame_Shift_Ins p.G181Rfs*12 0.25 TCGA-33-4583-01 16 30910773 30910773 C A CTF1 Silent p.P21P 0.39 TCGA-33-4583-01 16 30990907 30990907 G A SETD1A Missense_Mutation p.G1267E 0.42 unknown(0) TCGA-33-4583-01 16 31151700 31151700 C T PRSS36 Missense_Mutation p.R735Q 0.10 tolerated(0.25) benign(0.069) TCGA-33-4583-01 16 31154774 31154774 C A PRSS36 Missense_Mutation p.R330L 0.26 deleterious(0.05) possibly_damaging(0.664) TCGA-33-4583-01 16 32077421 32077421 A G IGHV3OR16-9 Silent p.V12V 0.20 TCGA-33-4583-01 16 3434703 3434703 G C ZSCAN32 Missense_Mutation p.I118M 0.32 tolerated(0.09) benign(0.056) TCGA-33-4583-01 16 4415002 4415002 A T CORO7 Splice_Site p.X300_splice 0.29 TCGA-33-4583-01 16 46695755 46695755 C A VPS35 Missense_Mutation p.V696L 0.15 deleterious(0) possibly_damaging(0.734) TCGA-33-4583-01 16 4752157 4752157 T C ANKS3 Missense_Mutation p.T319A 0.37 deleterious(0.01) probably_damaging(0.996) TCGA-33-4583-01 16 47622893 47622893 A G PHKB Silent p.T316T 0.20 TCGA-33-4583-01 16 48180385 48180385 T A ABCC12 5'UTR 0.51 TCGA-33-4583-01 16 50744941 50744941 T A NOD2 Silent p.R373R 0.17 TCGA-33-4583-01 16 57059882 57059882 A G NLRC5 Missense_Mutation p.M343V 0.26 tolerated(0.14) benign(0.021) TCGA-33-4583-01 16 66764024 66764024 G T DYNC1LI2 Silent p.P344P 0.20 TCGA-33-4583-01 16 75563610 75563610 C A CHST5 Missense_Mutation p.D225Y 0.22 deleterious(0) probably_damaging(1) TCGA-33-4583-01 16 77225393 77225393 G A MON1B Missense_Mutation p.G4E 0.10 tolerated_low_confidence(0.08) unknown(0) TCGA-33-4583-01 16 81199487 81199487 G A PKD1L2 3'Flank 0.50 TCGA-33-4583-01 16 814992 814992 G T MSLN Missense_Mutation p.A156S 0.40 tolerated(1) benign(0.08) TCGA-33-4583-01 16 87367544 87367544 G A FBXO31 Missense_Mutation p.P449S 0.19 deleterious(0.01) probably_damaging(0.965) TCGA-33-4583-01 16 88908314 88908314 C A GALNS Missense_Mutation p.A104S 0.16 tolerated(0.06) probably_damaging(0.934) TCGA-33-4583-01 16 89927144 89927144 G A SPIRE2 Missense_Mutation p.G506S 0.37 tolerated(0.84) benign(0.009) TCGA-33-4583-01 17 10356533 10356533 A G MYH4 Missense_Mutation p.M1016T 0.41 tolerated(0.08) benign(0) TCGA-33-4583-01 17 12656550 12656550 A G MYOCD Missense_Mutation p.I649V 0.20 tolerated(0.28) probably_damaging(0.995) TCGA-33-4583-01 17 15641352 15641352 G T TBC1D26 Missense_Mutation p.K80N 0.14 deleterious(0) possibly_damaging(0.755) TCGA-33-4583-01 17 18039048 18039048 A C MYO15A Silent p.S1502S 0.25 TCGA-33-4583-01 17 18070961 18070961 G A MYO15A Missense_Mutation p.E3336K 0.46 unknown(0) TCGA-33-4583-01 17 18178286 18178286 C G TOP3A Missense_Mutation p.G946R 0.41 tolerated(0.27) benign(0.008) TCGA-33-4583-01 17 21730737 21730737 C A UBBP4 Silent p.I13I 0.45 TCGA-33-4583-01 17 21731479 21731479 A T UBBP4 Missense_Mutation p.E185V 0.34 deleterious(0) benign(0.239) TCGA-33-4583-01 17 21825403 21825403 A T FAM27L RNA 0.30 TCGA-33-4583-01 17 2601427 2601427 T C CLUH Missense_Mutation p.N537S 0.40 tolerated(0.19) benign(0.402) TCGA-33-4583-01 17 3181248 3181248 G - OR3A2 3'UTR 0.11 TCGA-33-4583-01 17 33456482 33456482 C T FNDC8 Silent p.F209F 0.40 TCGA-33-4583-01 17 34171708 34171708 G C TAF15 Missense_Mutation p.G469R 0.27 deleterious_low_confidence(0) unknown(0) TCGA-33-4583-01 17 36714569 36714569 C A SRCIN1 Nonsense_Mutation p.E699* 0.47 TCGA-33-4583-01 17 3807227 3807227 G T P2RX1 Silent p.I173I 0.12 TCGA-33-4583-01 17 42030291 42030291 G A PYY 3'UTR 0.47 TCGA-33-4583-01 17 45235617 45235617 A C CDC27 Missense_Mutation p.L144V 0.24 deleterious(0.04) possibly_damaging(0.818) TCGA-33-4583-01 17 45668243 45668243 T C NPEPPS Missense_Mutation p.I419T 0.08 deleterious(0) probably_damaging(0.986) TCGA-33-4583-01 17 48069069 48069069 G T DLX3 Missense_Mutation p.P226T 0.37 tolerated(0.21) unknown(0) TCGA-33-4583-01 17 48649240 48649240 C A CACNA1G Missense_Mutation p.S196R 0.23 deleterious(0.03) probably_damaging(0.93) TCGA-33-4583-01 17 48917537 48917537 G A WFIKKN2 Silent p.L296L 0.15 TCGA-33-4583-01 17 5015123 5015123 C A ZNF232 5'UTR 0.19 TCGA-33-4583-01 17 56247867 56247867 C T OR4D2 Missense_Mutation p.P284L 0.16 deleterious(0.01) benign(0.32) TCGA-33-4583-01 17 56343621 56343621 C G LPO Missense_Mutation p.H543D 0.20 tolerated(0.26) possibly_damaging(0.898) TCGA-33-4583-01 17 57733350 57733350 G T CLTC Missense_Mutation p.A311S 0.21 tolerated(0.91) benign(0.005) TCGA-33-4583-01 17 62746127 62746127 C A hsa-mir-6080 Splice_Site 0.07 TCGA-33-4583-01 17 63010558 63010558 G A GNA13 Silent p.H317H 0.39 TCGA-33-4583-01 17 6374626 6374626 C A PITPNM3 Silent p.R493R 0.40 TCGA-33-4583-01 17 66251840 66251840 G T AMZ2 Splice_Site p.X251_splice 0.38 TCGA-33-4583-01 17 66928541 66928541 A T ABCA8 Missense_Mutation p.C229S 0.15 deleterious(0.04) benign(0.417) TCGA-33-4583-01 17 6733599 6733599 G C TEKT1 Missense_Mutation p.R33G 0.29 tolerated(0.17) possibly_damaging(0.564) TCGA-33-4583-01 17 7577536 7577536 T A TP53 Missense_Mutation p.R249W 0.18 deleterious(0.02) possibly_damaging(0.698) TCGA-33-4583-01 17 7578457 7578457 C A TP53 Missense_Mutation p.R158L 0.32 deleterious(0) probably_damaging(0.986) TCGA-33-4583-01 17 8161517 8161517 G T PFAS Missense_Mutation p.G446C 0.42 deleterious(0) probably_damaging(1) TCGA-33-4583-01 17 8351896 8351896 G T NDEL1 Nonsense_Mutation p.E140* 0.23 TCGA-33-4583-01 17 9480081 9480081 T G WDR16 Missense_Mutation p.N23K 0.36 tolerated(0.12) benign(0.13) TCGA-33-4583-01 17 9830031 9830031 T A GAS7 Missense_Mutation p.D314V 0.37 deleterious(0) probably_damaging(0.913) TCGA-33-4583-01 18 14848928 14848928 G T ANKRD30B Missense_Mutation p.R1013I 0.18 deleterious(0) possibly_damaging(0.864) TCGA-33-4583-01 18 21478918 21478918 G T LAMA3 Missense_Mutation p.A1909S 0.20 possibly_damaging(0.882) TCGA-33-4583-01 18 2762099 2762106 TAAGGTTA - SMCHD1 Splice_Site p.X1479_splice 0.32 TCGA-33-4583-01 18 31802995 31802995 C A NOL4 Missense_Mutation p.G75C 0.49 tolerated(0.1) possibly_damaging(0.735) TCGA-33-4583-01 18 54398666 54398666 T C WDR7 Silent p.A609A 0.12 TCGA-33-4583-01 18 580553 580553 G T CETN1 Missense_Mutation p.D49Y 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-33-4583-01 18 61304959 61304959 G T SERPINB4 Silent p.S389S 0.48 TCGA-33-4583-01 18 63530159 63530159 T C CDH7 Intron 0.45 TCGA-33-4583-01 18 67231765 67231765 A C DOK6 Missense_Mutation p.K37Q 0.49 deleterious(0) possibly_damaging(0.635) TCGA-33-4583-01 18 67231767 67231767 A T DOK6 Missense_Mutation p.K37N 0.49 tolerated(0.08) benign(0.176) TCGA-33-4583-01 18 724498 724498 C T YES1 Missense_Mutation p.E520K 0.14 deleterious(0) probably_damaging(0.993) TCGA-33-4583-01 19 10251546 10251546 T C DNMT1 Missense_Mutation p.E1145G 0.33 tolerated(0.06) benign(0.005) TCGA-33-4583-01 19 1068536 1068536 G A HMHA1 Missense_Mutation p.A88T 0.47 deleterious(0.01) benign(0.104) TCGA-33-4583-01 19 11598248 11598248 C A ZNF653 Missense_Mutation p.G344C 0.34 tolerated(0.1) possibly_damaging(0.902) TCGA-33-4583-01 19 12768923 12768923 C G MAN2B1 Silent p.L421L 0.39 TCGA-33-4583-01 19 12963199 12963199 A T MAST1 Missense_Mutation p.D356V 0.22 deleterious(0.02) benign(0.064) TCGA-33-4583-01 19 15536511 15536511 C A WIZ Missense_Mutation p.G384C 0.43 deleterious(0) probably_damaging(0.999) TCGA-33-4583-01 19 17720813 17720813 G T UNC13A Missense_Mutation p.R1583S 0.35 deleterious(0) probably_damaging(0.999) TCGA-33-4583-01 19 18679273 18679273 G T KXD1 Silent p.T121T 0.30 TCGA-33-4583-01 19 20807398 20807398 C T ZNF626 Missense_Mutation p.E429K 0.11 tolerated(0.06) probably_damaging(0.994) TCGA-33-4583-01 19 21607137 21607137 A T ZNF493 Missense_Mutation p.H559L 0.15 tolerated(0.36) benign(0.02) TCGA-33-4583-01 19 22154701 22154701 A C ZNF208 Silent p.T1045T 0.29 TCGA-33-4583-01 19 22271571 22271571 G C ZNF257 Missense_Mutation p.G340A 0.30 deleterious(0.04) possibly_damaging(0.7) TCGA-33-4583-01 19 2344643 2344643 G - SPPL2B RNA 0.24 TCGA-33-4583-01 19 2810340 2810340 G T THOP1 Silent p.R498R 0.17 TCGA-33-4583-01 19 30164860 30164860 C T PLEKHF1 Silent p.G38G 0.38 TCGA-33-4583-01 19 35169642 35169642 G T ZNF302 Intron 0.29 TCGA-33-4583-01 19 36017690 36017690 G T SBSN Silent p.V498V 0.31 TCGA-33-4583-01 19 38993304 38993304 G T RYR1 Missense_Mutation p.R2591L 0.23 benign(0.054) TCGA-33-4583-01 19 39096258 39096258 C T MAP4K1 Missense_Mutation p.R438H 0.53 tolerated(0.29) benign(0.002) TCGA-33-4583-01 19 46526126 46526126 G A PGLYRP1 Silent p.L52L 0.30 TCGA-33-4583-01 19 46974357 46974357 C T PNMAL1 5'UTR 0.31 TCGA-33-4583-01 19 49812653 49812653 C A SLC6A16 Missense_Mutation p.V298L 0.35 tolerated(0.16) benign(0.364) TCGA-33-4583-01 19 51917030 51917030 G A SIGLEC10 Missense_Mutation p.P586L 0.29 deleterious(0.02) possibly_damaging(0.461) TCGA-33-4583-01 19 52034754 52034754 C G SIGLEC6 Silent p.R29R 0.29 TCGA-33-4583-01 19 52249292 52249292 C T FPR1 Missense_Mutation p.S319N 0.34 deleterious(0.04) benign(0.206) TCGA-33-4583-01 19 53345361 53345361 C - ZNF468 Frame_Shift_Del p.Q63Kfs*6 0.22 TCGA-33-4583-01 19 53678739 53678739 C A ZNF665 Missense_Mutation p.R34M 0.28 deleterious(0) possibly_damaging(0.866) TCGA-33-4583-01 19 54140174 54140174 C A DPRX Missense_Mutation p.Q170K 0.25 tolerated(0.23) benign(0.373) TCGA-33-4583-01 19 54401275 54401275 C A PRKCG Silent p.P334P 0.26 TCGA-33-4583-01 19 55146609 55146609 C A LILRB1 Missense_Mutation p.T514K 0.19 tolerated(1) benign(0.002) TCGA-33-4583-01 19 55670582 55670582 C A DNAAF3 Missense_Mutation p.G559C 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.849) TCGA-33-4583-01 19 56321514 56321514 C G NLRP11 Missense_Mutation p.E154D 0.26 tolerated(0.77) benign(0.001) TCGA-33-4583-01 19 56370413 56370413 G C NLRP4 Missense_Mutation p.A552P 0.32 tolerated(0.17) benign(0.015) TCGA-33-4583-01 19 56538652 56538652 G A NLRP5 Missense_Mutation p.M351I 0.27 deleterious(0.02) possibly_damaging(0.543) TCGA-33-4583-01 19 57328278 57328278 C A PEG3 Missense_Mutation p.G511V 0.30 deleterious(0) probably_damaging(0.999) TCGA-33-4583-01 19 57328279 57328279 C A PEG3 Nonsense_Mutation p.G511* 0.29 TCGA-33-4583-01 19 57867773 57867773 G C ZNF304 Missense_Mutation p.S179T 0.27 tolerated(0.47) benign(0.176) TCGA-33-4583-01 19 58100030 58100030 C T ZIK1 Silent p.L66L 0.27 TCGA-33-4583-01 19 59021301 59021301 C A SLC27A5 Missense_Mutation p.A324S 0.37 deleterious(0.02) benign(0.345) TCGA-33-4583-01 19 694935 694935 C G PRSS57 Missense_Mutation p.E39Q 0.53 tolerated(0.05) possibly_damaging(0.782) TCGA-33-4583-01 19 7810768 7810768 G C CD209 Silent p.T128T 0.31 TCGA-33-4583-01 19 8563166 8563166 C A PRAM1 Silent p.R480R 0.44 TCGA-33-4583-01 19 8841616 8841616 G T OR2Z1 Missense_Mutation p.V76F 0.34 deleterious(0.01) possibly_damaging(0.807) TCGA-33-4583-01 19 9005596 9005596 T C MUC16 Silent p.G13270G 0.31 TCGA-33-4583-01 19 9056214 9056214 G C MUC16 Missense_Mutation p.T10411R 0.32 benign(0.027) TCGA-33-4583-01 19 9056609 9056609 C A MUC16 Missense_Mutation p.M10279I 0.39 benign(0.003) TCGA-33-4583-01 19 9213749 9213749 G T OR7G2 Silent p.T78T 0.34 TCGA-33-4583-01 19 9584931 9584931 T A ZNF560 Missense_Mutation p.Q34L 0.32 deleterious(0.01) possibly_damaging(0.728) TCGA-33-4583-01 1 103412503 103412503 C A COL11A1 Nonsense_Mutation p.G1060* 0.47 TCGA-33-4583-01 1 109795276 109795276 G C CELSR2 Missense_Mutation p.D859H 0.45 deleterious(0) probably_damaging(0.999) TCGA-33-4583-01 1 111784000 111784000 G T CHI3L2 Missense_Mutation p.V324F 0.52 deleterious(0) probably_damaging(0.999) TCGA-33-4583-01 1 13001318 13001318 C A PRAMEF6 Missense_Mutation p.R122L 0.19 tolerated(0.41) benign(0.002) TCGA-33-4583-01 1 145415810 145415810 T C HFE2 Missense_Mutation p.L210S 0.46 tolerated(0.25) benign(0.005) TCGA-33-4583-01 1 150769207 150769207 A G CTSK 3'UTR 0.28 TCGA-33-4583-01 1 154187017 154187017 T A C1orf43 Missense_Mutation p.R68W 0.54 deleterious(0.04) probably_damaging(0.987) TCGA-33-4583-01 1 155265282 155265282 C A PKLR Silent p.V151V 0.59 TCGA-33-4583-01 1 156027821 156027821 C A LAMTOR2 Missense_Mutation p.A95D 0.51 deleterious(0) probably_damaging(0.989) TCGA-33-4583-01 1 156843688 156843688 G T NTRK1 Missense_Mutation p.A372S 0.53 tolerated(0.44) benign(0.051) TCGA-33-4583-01 1 156845871 156845871 G T NTRK1 Splice_Site p.X501_splice 0.20 TCGA-33-4583-01 1 158549355 158549355 C T OR10X1 Missense_Mutation p.G112D 0.22 deleterious(0.02) benign(0.124) TCGA-33-4583-01 1 158687440 158687440 G C OR6K3 Missense_Mutation p.L156V 0.23 tolerated(0.5) benign(0.1) TCGA-33-4583-01 1 158988388 158988388 C G IFI16 Missense_Mutation p.L307V 0.23 deleterious(0) possibly_damaging(0.832) TCGA-33-4583-01 1 160313019 160313019 C T COPA 5'UTR 0.23 TCGA-33-4583-01 1 160607207 160607207 G T SLAMF1 Silent p.V63V 0.21 TCGA-33-4583-01 1 161953613 161953613 G T OLFML2B Missense_Mutation p.T702N 0.18 deleterious(0) probably_damaging(1) TCGA-33-4583-01 1 162351745 162351745 C T RP11-565P22.6 Silent p.S127S 0.24 TCGA-33-4583-01 1 163297351 163297351 T A NUF2 Missense_Mutation p.M66K 0.16 deleterious(0.03) benign(0.078) TCGA-33-4583-01 1 167654655 167654655 C T RCSD1 Intron 0.56 TCGA-33-4583-01 1 173493188 173493188 T C SLC9C2 Missense_Mutation p.I854V 0.50 tolerated(0.08) benign(0.11) TCGA-33-4583-01 1 175066586 175066586 G T TNN Missense_Mutation p.R541L 0.42 tolerated(0.12) benign(0.025) TCGA-33-4583-01 1 175335165 175335165 G T TNR Silent p.T721T 0.16 TCGA-33-4583-01 1 177933402 177933402 C T SEC16B Silent p.R182R 0.40 TCGA-33-4583-01 1 181726098 181726098 C T CACNA1E Nonsense_Mutation p.R1389* 0.04 TCGA-33-4583-01 1 181767480 181767480 C A CACNA1E Missense_Mutation p.T2151N 0.45 deleterious(0) probably_damaging(0.95) TCGA-33-4583-01 1 185144061 185144061 A T SWT1 Missense_Mutation p.K261M 0.53 deleterious(0.01) possibly_damaging(0.907) TCGA-33-4583-01 1 18808058 18808058 G A KLHDC7A Missense_Mutation p.E195K 0.41 tolerated(0.38) benign(0.01) TCGA-33-4583-01 1 196876516 196876516 G T CFHR4 Silent p.V228V 0.23 TCGA-33-4583-01 1 197070783 197070783 G A ASPM Missense_Mutation p.S2533F 0.22 deleterious(0) probably_damaging(0.982) TCGA-33-4583-01 1 197072005 197072005 T A ASPM Missense_Mutation p.M2126L 0.19 tolerated(0.22) benign(0.003) TCGA-33-4583-01 1 198671556 198671556 A G PTPRC Silent p.T160T 0.24 TCGA-33-4583-01 1 198704280 198704280 T A PTPRC Missense_Mutation p.S768T 0.29 tolerated(0.14) benign(0.381) TCGA-33-4583-01 1 204985583 204985583 G T NFASC Silent p.T1213T 0.19 TCGA-33-4583-01 1 205687341 205687341 C T NUCKS1 3'UTR 0.17 TCGA-33-4583-01 1 207658901 207658901 C G CR2 3'UTR 0.59 TCGA-33-4583-01 1 208084408 208084408 G A CD34 Silent p.G6G 0.42 TCGA-33-4583-01 1 211192446 211192446 A T KCNH1 Nonsense_Mutation p.Y237* 0.23 TCGA-33-4583-01 1 211276913 211276913 T A KCNH1 Missense_Mutation p.T79S 0.45 tolerated(0.18) benign(0.052) TCGA-33-4583-01 1 213068683 213068683 C T FLVCR1 3'UTR 0.23 TCGA-33-4583-01 1 214817978 214817978 G T CENPF Missense_Mutation p.D1689Y 0.25 possibly_damaging(0.748) TCGA-33-4583-01 1 22211643 22211643 G A HSPG2 Silent p.P406P 0.40 TCGA-33-4583-01 1 227954784 227954784 G T SNAP47 Missense_Mutation p.Q416H 0.18 deleterious(0) possibly_damaging(0.906) TCGA-33-4583-01 1 228431117 228431117 G A OBSCN Missense_Mutation p.E1147K 0.56 possibly_damaging(0.826) TCGA-33-4583-01 1 232600813 232600813 C A SIPA1L2 Missense_Mutation p.G865C 0.52 tolerated(0.05) probably_damaging(0.998) TCGA-33-4583-01 1 235324549 235324549 C A RBM34 5'UTR 0.49 TCGA-33-4583-01 1 235331886 235331886 G C ARID4B Nonsense_Mutation p.S1298* 0.45 TCGA-33-4583-01 1 235973326 235973326 T G LYST Missense_Mutation p.L264F 0.50 deleterious(0) probably_damaging(0.996) TCGA-33-4583-01 1 237617769 237617769 G T RYR2 Missense_Mutation p.Q457H 0.45 benign(0.183) TCGA-33-4583-01 1 242035551 242035551 T C EXO1 Silent p.G495G 0.53 TCGA-33-4583-01 1 242161836 242161836 G T MAP1LC3C Silent p.T67T 0.53 TCGA-33-4583-01 1 247150705 247150705 C A ZNF695 Missense_Mutation p.R371M 0.09 deleterious(0.03) probably_damaging(0.958) TCGA-33-4583-01 1 247587425 247587425 C A NLRP3 Missense_Mutation p.A227E 0.52 deleterious(0) possibly_damaging(0.863) TCGA-33-4583-01 1 247875890 247875890 A G OR6F1 Silent p.H56H 0.51 TCGA-33-4583-01 1 247921036 247921036 C G OR1C1 Missense_Mutation p.V225L 0.48 deleterious(0.01) benign(0.036) TCGA-33-4583-01 1 248524899 248524899 G A OR2T4 Nonsense_Mutation p.W6* 0.23 TCGA-33-4583-01 1 248685150 248685150 G T OR2G6 Missense_Mutation p.C68F 0.55 tolerated(1) benign(0) TCGA-33-4583-01 1 248801859 248801859 C T OR2T35 Missense_Mutation p.R234Q 0.11 tolerated(0.09) benign(0.038) TCGA-33-4583-01 1 248813815 248813815 A T OR2T27 Missense_Mutation p.V124E 0.11 deleterious(0.01) possibly_damaging(0.628) TCGA-33-4583-01 1 27874402 27874402 T G AHDC1 Missense_Mutation p.K1409Q 0.57 deleterious_low_confidence(0.01) possibly_damaging(0.607) TCGA-33-4583-01 1 36181836 36181836 T A C1orf216 Silent p.P29P 0.56 TCGA-33-4583-01 1 39910348 39910348 G A MACF1 Silent p.Q4423Q 0.06 TCGA-33-4583-01 1 40029580 40029580 C A PABPC4 Missense_Mutation p.D490Y 0.39 tolerated(0.42) benign(0) TCGA-33-4583-01 1 40029581 40029581 C G PABPC4 Silent p.P489P 0.40 TCGA-33-4583-01 1 40029582 40029582 G A PABPC4 Missense_Mutation p.P489L 0.40 deleterious(0.04) benign(0) TCGA-33-4583-01 1 53122665 53122665 G T FAM159A Nonsense_Mutation p.E176* 0.47 TCGA-33-4583-01 1 54606960 54606960 C A CDCP2 Missense_Mutation p.V192L 0.46 tolerated(1) benign(0.013) TCGA-33-4583-01 1 66384311 66384311 G T PDE4B Missense_Mutation p.S25I 0.52 tolerated_low_confidence(0.2) benign(0.074) TCGA-33-4583-01 1 74507364 74507364 G T LRRIQ3 Silent p.L417L 0.49 TCGA-33-4583-01 1 75606778 75606778 C A LHX8 Missense_Mutation p.L126I 0.46 tolerated(0.08) possibly_damaging(0.885) TCGA-33-4583-01 1 75606780 75606780 T A LHX8 Silent p.L126L 0.45 TCGA-33-4583-01 1 99772006 99772006 C A LPPR4 Missense_Mutation p.Q578K 0.52 deleterious(0) probably_damaging(0.991) TCGA-33-4583-01 20 10032359 10032359 T C ANKEF1 Silent p.F564F 0.16 TCGA-33-4583-01 20 13055143 13055143 T C SPTLC3 Missense_Mutation p.M202T 0.05 tolerated(0.14) possibly_damaging(0.677) TCGA-33-4583-01 20 13830172 13830172 C A SEL1L2 Missense_Mutation p.V563F 0.13 deleterious_low_confidence(0) benign(0.241) TCGA-33-4583-01 20 14066307 14066307 G T MACROD2 Missense_Mutation p.L68F 0.39 tolerated(0.09) benign(0.373) TCGA-33-4583-01 20 18505080 18505080 G T SEC23B Missense_Mutation p.G124C 0.18 deleterious(0.02) possibly_damaging(0.76) TCGA-33-4583-01 20 2464715 2464715 C A ZNF343 Missense_Mutation p.V298L 0.37 tolerated(0.1) benign(0.151) TCGA-33-4583-01 20 25003611 25003611 C T ACSS1 Missense_Mutation p.A309T 0.21 deleterious(0.02) probably_damaging(0.993) TCGA-33-4583-01 20 31673913 31673913 T A BPIFB4 Missense_Mutation p.L290Q 0.48 deleterious(0) probably_damaging(0.91) TCGA-33-4583-01 20 32078086 32078086 C T CBFA2T2 Missense_Mutation p.P5S 0.50 tolerated_low_confidence(0.25) possibly_damaging(0.803) TCGA-33-4583-01 20 3274874 3274874 T A C20orf194 Missense_Mutation p.I717F 0.16 deleterious(0) benign(0.203) TCGA-33-4583-01 20 3673596 3673596 G T SIGLEC1 Missense_Mutation p.P1231T 0.49 tolerated(0.25) probably_damaging(0.964) TCGA-33-4583-01 20 44171468 44171468 C G EPPIN Missense_Mutation p.A88P 0.47 tolerated(0.07) possibly_damaging(0.808) TCGA-33-4583-01 20 44515306 44515306 G T SPATA25 Silent p.I178I 0.49 TCGA-33-4583-01 20 4850594 4850594 C A SLC23A2 Missense_Mutation p.R403L 0.46 deleterious(0) probably_damaging(0.997) TCGA-33-4583-01 20 57415389 57415389 C T RP4-806M20.3 5'Flank 0.48 TCGA-33-4583-01 20 58318262 58318262 G T PHACTR3 Missense_Mutation p.R73S 0.55 deleterious(0) probably_damaging(0.996) TCGA-33-4583-01 21 10862976 10862976 G T IGHV1OR21-1 Missense_Mutation p.R91M 0.06 tolerated(0.13) possibly_damaging(0.713) TCGA-33-4583-01 21 10998336 10998336 C A TPTE Splice_Site 0.06 TCGA-33-4583-01 21 11039227 11039227 G - BAGE2 RNA 0.09 TCGA-33-4583-01 21 31062053 31062053 C A GRIK1 Missense_Mutation p.S180I 0.30 deleterious(0) possibly_damaging(0.576) TCGA-33-4583-01 21 31744209 31744209 C G KRTAP13-2 Missense_Mutation p.R108P 0.45 tolerated(0.2) benign(0.009) TCGA-33-4583-01 21 46117425 46117425 C A KRTAP10-12 Silent p.A103A 0.38 TCGA-33-4583-01 22 16256543 16256543 C T POTEH 3'UTR 0.11 TCGA-33-4583-01 22 16266989 16266989 C G POTEH Missense_Mutation p.R487T 0.11 deleterious(0.01) benign(0.08) TCGA-33-4583-01 22 17619552 17619552 C A CECR5 Missense_Mutation p.G275C 0.43 deleterious(0) possibly_damaging(0.827) TCGA-33-4583-01 22 21075678 21075678 C A PI4KA Missense_Mutation p.W1675L 0.42 tolerated(0.61) benign(0.215) TCGA-33-4583-01 22 21096529 21096529 C A PI4KA Missense_Mutation p.G1243V 0.53 deleterious(0) benign(0.096) TCGA-33-4583-01 22 24487755 24487755 C A CABIN1 Silent p.I1248I 0.39 TCGA-33-4583-01 22 26423607 26423607 A T MYO18B Missense_Mutation p.D2556V 0.62 deleterious(0) probably_damaging(0.909) TCGA-33-4583-01 22 30398972 30398972 G T MTMR3 Missense_Mutation p.V221F 0.45 deleterious(0) probably_damaging(0.991) TCGA-33-4583-01 22 34046499 34046499 C A LARGE Missense_Mutation p.G88C 0.10 deleterious_low_confidence(0.02) benign(0.376) TCGA-33-4583-01 22 36155936 36155936 C A RBFOX2 Missense_Mutation p.G370C 0.39 probably_damaging(0.998) TCGA-33-4583-01 22 36702581 36702581 C T MYH9 Missense_Mutation p.R639Q 0.37 possibly_damaging(0.783) TCGA-33-4583-01 22 45731235 45731235 T A FAM118A Silent p.A314A 0.29 TCGA-33-4583-01 22 46088935 46088935 T C ATXN10 Missense_Mutation p.V123A 0.06 tolerated(0.18) benign(0.002) TCGA-33-4583-01 22 50191604 50191604 A G BRD1 Silent p.Y649Y 0.60 TCGA-33-4583-01 2 100170906 100170906 C A AFF3 Silent p.L1167L 0.64 TCGA-33-4583-01 2 112604762 112604762 C T ANAPC1 Missense_Mutation p.G602D 0.69 tolerated(0.12) possibly_damaging(0.543) TCGA-33-4583-01 2 113591131 113591131 G T IL1B Missense_Mutation p.L41I 0.28 tolerated(0.18) possibly_damaging(0.642) TCGA-33-4583-01 2 120194773 120194773 G T TMEM37 Missense_Mutation p.M110I 0.70 tolerated(0.13) benign(0.011) TCGA-33-4583-01 2 127818201 127818201 C T BIN1 Intron 0.66 TCGA-33-4583-01 2 128324316 128324316 C T MYO7B Silent p.G128G 0.67 TCGA-33-4583-01 2 12863631 12863631 G T TRIB2 Silent p.V172V 0.43 TCGA-33-4583-01 2 128775365 128775365 C A SAP130 Missense_Mutation p.Q105H 0.72 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-33-4583-01 2 141202228 141202228 C A LRP1B Missense_Mutation p.G3360C 0.68 probably_damaging(0.991) TCGA-33-4583-01 2 141986915 141986915 T A LRP1B Silent p.S229S 0.49 TCGA-33-4583-01 2 143787241 143787241 G A KYNU Missense_Mutation p.M316I 0.31 deleterious(0) probably_damaging(0.971) TCGA-33-4583-01 2 145157325 145157325 C A ZEB2 Missense_Mutation p.D477Y 0.53 deleterious(0) probably_damaging(0.926) TCGA-33-4583-01 2 165349451 165349451 T C GRB14 3'UTR 0.61 TCGA-33-4583-01 2 165997167 165997167 G T SCN3A Silent p.P671P 0.57 TCGA-33-4583-01 2 166532979 166532980 - T CSRNP3 Frame_Shift_Ins p.G190Wfs*6 0.58 TCGA-33-4583-01 2 166740350 166740350 T A TTC21B Missense_Mutation p.Y1213F 0.66 tolerated(0.61) benign(0.165) TCGA-33-4583-01 2 167279930 167279930 T C SCN7A Missense_Mutation p.I956V 0.61 tolerated(0.15) benign(0.358) TCGA-33-4583-01 2 168107333 168107333 C A XIRP2 Missense_Mutation p.S3144Y 0.65 possibly_damaging(0.805) TCGA-33-4583-01 2 169707637 169707637 A G NOSTRIN Missense_Mutation p.N282S 0.59 tolerated(0.11) benign(0.027) TCGA-33-4583-01 2 179325139 179325139 G C DFNB59 Silent p.L244L 0.69 TCGA-33-4583-01 2 179411946 179411946 C T TTN Missense_Mutation p.G31436S 0.67 TCGA-33-4583-01 2 179413505 179413505 G T TTN Missense_Mutation p.Q30950K 0.66 TCGA-33-4583-01 2 179429564 179429564 C T TTN Missense_Mutation p.D27099N 0.32 TCGA-33-4583-01 2 179442567 179442567 C G TTN Missense_Mutation p.W22862C 0.59 TCGA-33-4583-01 2 179466840 179466840 G T TTN Missense_Mutation p.D18386E 0.70 TCGA-33-4583-01 2 186673790 186673790 T A FSIP2 Nonsense_Mutation p.L6675* 0.64 TCGA-33-4583-01 2 198327404 198327404 G T COQ10B Silent p.V132V 0.69 TCGA-33-4583-01 2 202337718 202337718 G A STRADB Silent p.R78R 0.64 TCGA-33-4583-01 2 206023449 206023449 G A PARD3B Intron 0.55 TCGA-33-4583-01 2 207583001 207583001 C T DYTN Translation_Start_Site p.M1? 0.57 deleterious(0.01) benign(0.081) TCGA-33-4583-01 2 21256232 21256232 G A APOB Silent p.L355L 0.50 TCGA-33-4583-01 2 219029167 219029167 C A CXCR1 Silent p.L256L 0.06 TCGA-33-4583-01 2 224822335 224822335 G T MRPL44 Missense_Mutation p.R49L 0.58 tolerated(0.2) possibly_damaging(0.538) TCGA-33-4583-01 2 225422373 225422373 T A CUL3 Intron 0.66 TCGA-33-4583-01 2 225653789 225653789 A G DOCK10 Missense_Mutation p.Y1804H 0.39 deleterious(0) probably_damaging(0.993) TCGA-33-4583-01 2 228882814 228882814 T A SPHKAP Missense_Mutation p.K919M 0.68 deleterious(0.03) probably_damaging(0.977) TCGA-33-4583-01 2 228884816 228884816 C G SPHKAP Missense_Mutation p.A252P 0.67 tolerated(0.28) benign(0.019) TCGA-33-4583-01 2 24046409 24046409 C T ATAD2B Missense_Mutation p.C617Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-33-4583-01 2 241494375 241494375 C G ANKMY1 5'UTR 0.71 TCGA-33-4583-01 2 27373020 27373020 G T TCF23 Silent p.R84R 0.40 TCGA-33-4583-01 2 27460931 27460931 A T CAD Missense_Mutation p.E1579V 0.49 deleterious(0.04) possibly_damaging(0.589) TCGA-33-4583-01 2 27801261 27801261 C A C2orf16 Missense_Mutation p.P608T 0.13 tolerated(0.07) benign(0.001) TCGA-33-4583-01 2 32961770 32961770 G A TTC27 Missense_Mutation p.A447T 0.41 deleterious(0) probably_damaging(0.994) TCGA-33-4583-01 2 37247018 37247018 C A HEATR5B Silent p.V1346V 0.47 TCGA-33-4583-01 2 3730597 3730597 C A ALLC Silent p.S148S 0.48 TCGA-33-4583-01 2 48872229 48872229 G A STON1-GTF2A1L Missense_Mutation p.A825T 0.10 deleterious(0.05) possibly_damaging(0.582) TCGA-33-4583-01 2 51255264 51255264 A T NRXN1 Missense_Mutation p.C50S 0.42 tolerated(0.72) benign(0.099) TCGA-33-4583-01 2 56599485 56599485 C A CCDC85A Missense_Mutation p.Q442K 0.56 tolerated_low_confidence(0.31) benign(0.013) TCGA-33-4583-01 2 74761091 74761091 T A LOXL3 Silent p.A702A 0.19 TCGA-33-4583-01 2 75874310 75874310 C T MRPL19 Silent p.I62I 0.50 TCGA-33-4583-01 2 89156785 89156785 G T IGKC 3'UTR 0.44 TCGA-33-4583-01 2 89619855 89619855 C A IGKV1-39 Translation_Start_Site p.M1? 0.15 tolerated_low_confidence(0.06) possibly_damaging(0.455) TCGA-33-4583-01 2 96781414 96781414 G A ADRA2B Missense_Mutation p.R159C 0.43 deleterious(0.04) benign(0.017) TCGA-33-4583-01 3 108690217 108690217 T A MORC1 Missense_Mutation p.Q837L 0.56 tolerated(0.13) benign(0.002) TCGA-33-4583-01 3 113890804 113890804 G A DRD3 Silent p.N12N 0.62 TCGA-33-4583-01 3 119276533 119276533 G A CD80 Missense_Mutation p.P15S 0.26 tolerated(0.21) benign(0.032) TCGA-33-4583-01 3 124720847 124720847 G A HEG1 Silent p.N1122N 0.19 TCGA-33-4583-01 3 126726697 126726697 G A PLXNA1 Missense_Mutation p.V685M 0.36 tolerated(0.23) benign(0.031) TCGA-33-4583-01 3 130682848 130682848 C G ATP2C1 Silent p.P345P 0.36 TCGA-33-4583-01 3 133099697 133099697 C T TMEM108 Missense_Mutation p.T381I 0.34 tolerated_low_confidence(0.06) possibly_damaging(0.453) TCGA-33-4583-01 3 138338595 138338595 C A FAIM Intron 0.42 TCGA-33-4583-01 3 138739091 138739091 T A PRR23B Missense_Mutation p.E138V 0.40 deleterious(0) possibly_damaging(0.773) TCGA-33-4583-01 3 140281055 140281055 T A CLSTN2 Nonsense_Mutation p.L706* 0.33 TCGA-33-4583-01 3 140397113 140397113 G A TRIM42 Nonsense_Mutation p.W14* 0.40 TCGA-33-4583-01 3 143297493 143297493 C A SLC9A9 Silent p.G276G 0.31 TCGA-33-4583-01 3 151094642 151094642 A G MED12L Missense_Mutation p.K1335E 0.25 deleterious(0.03) possibly_damaging(0.728) TCGA-33-4583-01 3 155203429 155203429 G T PLCH1 Missense_Mutation p.S905Y 0.26 deleterious(0.01) possibly_damaging(0.594) TCGA-33-4583-01 3 155311743 155311743 T A PLCH1 Missense_Mutation p.R141W 0.52 deleterious(0) probably_damaging(1) TCGA-33-4583-01 3 169540420 169540420 G C LRRIQ4 Silent p.S237S 0.36 TCGA-33-4583-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.26 deleterious(0.02) probably_damaging(0.959) TCGA-33-4583-01 3 179458136 179458136 C G USP13 Missense_Mutation p.F452L 0.32 tolerated(0.45) benign(0.028) TCGA-33-4583-01 3 182733115 182733115 C A MCCC1 3'UTR 0.29 TCGA-33-4583-01 3 194392915 194392915 C A LSG1 5'UTR 0.42 TCGA-33-4583-01 3 194392917 194392917 T C LSG1 5'UTR 0.43 TCGA-33-4583-01 3 39230709 39230709 A T XIRP1 Missense_Mutation p.D76E 0.34 tolerated(0.29) possibly_damaging(0.778) TCGA-33-4583-01 3 44932107 44932107 G T TGM4 Missense_Mutation p.V105F 0.55 deleterious(0) probably_damaging(0.957) TCGA-33-4583-01 3 49160961 49160961 C A LAMB2 Nonsense_Mutation p.E1301* 0.57 TCGA-33-4583-01 3 51937094 51937094 C A IQCF1 Missense_Mutation p.Q5H 0.53 deleterious_low_confidence(0.01) benign(0.215) TCGA-33-4583-01 3 52263188 52263188 C A TWF2 Silent p.T304T 0.50 TCGA-33-4583-01 3 52847313 52847313 C G ITIH4 3'UTR 0.70 TCGA-33-4583-01 3 62253411 62253411 A G PTPRG Missense_Mutation p.T931A 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-33-4583-01 4 100784938 100784938 A G DAPP1 Silent p.P204P 0.60 TCGA-33-4583-01 4 153244198 153244198 C G FBXW7 Silent p.T653T 0.44 TCGA-33-4583-01 4 155530895 155530895 T A FGG Nonsense_Mutation p.K185* 0.47 TCGA-33-4583-01 4 162376272 162376272 G T FSTL5 Silent p.T575T 0.51 TCGA-33-4583-01 4 167833857 167833857 C A SPOCK3 Missense_Mutation p.G133C 0.35 deleterious(0) possibly_damaging(0.592) TCGA-33-4583-01 4 189012776 189012776 G C TRIML2 Missense_Mutation p.F305L 0.46 tolerated(0.08) probably_damaging(0.913) TCGA-33-4583-01 4 189012862 189012862 C T TRIML2 Missense_Mutation p.A277T 0.42 tolerated(0.06) benign(0) TCGA-33-4583-01 4 20598065 20598065 C G SLIT2 Silent p.P1116P 0.45 TCGA-33-4583-01 4 42403061 42403061 T A SHISA3 Missense_Mutation p.S104T 0.51 tolerated(0.07) probably_damaging(0.996) TCGA-33-4583-01 4 49040053 49040053 A T CWH43 Missense_Mutation p.E553D 0.56 deleterious(0.01) possibly_damaging(0.779) TCGA-33-4583-01 4 69093608 69093608 C G TMPRSS11B 3'UTR 0.48 TCGA-33-4583-01 4 72338609 72338609 G C SLC4A4 Missense_Mutation p.D609H 0.49 tolerated(0.41) benign(0.004) TCGA-33-4583-01 4 83778278 83778278 C T SEC31A Missense_Mutation p.D570N 0.50 deleterious(0) possibly_damaging(0.677) TCGA-33-4583-01 4 8613819 8613819 T C CPZ Silent p.N431N 0.58 TCGA-33-4583-01 4 88973290 88973290 G T PKD2 Missense_Mutation p.V566L 0.52 tolerated(0.41) possibly_damaging(0.677) TCGA-33-4583-01 4 96761453 96761453 C A PDHA2 Missense_Mutation p.T51N 0.42 tolerated(0.29) benign(0.027) TCGA-33-4583-01 5 101572495 101572495 G T SLCO4C1 3'UTR 0.20 TCGA-33-4583-01 5 10405769 10405769 C T MARCH6 Nonsense_Mutation p.R478* 0.35 TCGA-33-4583-01 5 1084028 1084028 C G SLC12A7 Missense_Mutation p.D321H 0.25 deleterious(0.04) benign(0.029) TCGA-33-4583-01 5 109103254 109103254 G T MAN2A1 Missense_Mutation p.G285V 0.34 deleterious(0) probably_damaging(0.991) TCGA-33-4583-01 5 11411671 11411671 G T CTNND2 Missense_Mutation p.P139Q 0.31 deleterious(0.01) benign(0.171) TCGA-33-4583-01 5 125894941 125894941 C T ALDH7A1 Silent p.A333A 0.26 TCGA-33-4583-01 5 128442721 128442721 C G ISOC1 Nonsense_Mutation p.S239* 0.25 TCGA-33-4583-01 5 128844853 128844853 T A ADAMTS19 Silent p.R271R 0.42 TCGA-33-4583-01 5 129243813 129243813 G T CHSY3 Missense_Mutation p.K282N 0.29 deleterious(0.01) possibly_damaging(0.468) TCGA-33-4583-01 5 131915105 131915105 C T RAD50 Silent p.V154V 0.30 TCGA-33-4583-01 5 134232099 134232099 A T TXNDC15 Missense_Mutation p.I291F 0.32 deleterious(0) possibly_damaging(0.879) TCGA-33-4583-01 5 135583364 135583364 C A TRPC7 Missense_Mutation p.A547S 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-33-4583-01 5 135651309 135651309 G T TRPC7 Silent p.L313L 0.21 TCGA-33-4583-01 5 137506041 137506041 T C BRD8 Silent p.A166A 0.38 TCGA-33-4583-01 5 140207706 140207706 A T PCDHA6 Silent p.G10G 0.32 TCGA-33-4583-01 5 140248759 140248759 G T PCDHA11 Missense_Mutation p.W24L 0.38 deleterious_low_confidence(0) benign(0.271) TCGA-33-4583-01 5 140263703 140263704 GC - PCDHA13 Frame_Shift_Del p.R619Hfs*37 0.31 TCGA-33-4583-01 5 140308655 140308655 G T PCDHAC1 Missense_Mutation p.R726S 0.31 tolerated(0.24) benign(0.01) TCGA-33-4583-01 5 140432759 140432759 C G PCDHB1 Missense_Mutation p.N568K 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-33-4583-01 5 140474456 140474456 G T PCDHB2 Missense_Mutation p.A28S 0.18 tolerated_low_confidence(0.07) benign(0.303) TCGA-33-4583-01 5 140482412 140482412 G T PCDHB3 Missense_Mutation p.V727L 0.31 deleterious_low_confidence(0.05) benign(0.01) TCGA-33-4583-01 5 140501785 140501785 G T PCDHB4 Missense_Mutation p.D69Y 0.26 deleterious_low_confidence(0.04) probably_damaging(0.94) TCGA-33-4583-01 5 140532060 140532060 G T PCDHB6 Missense_Mutation p.G741V 0.33 deleterious(0) probably_damaging(0.994) TCGA-33-4583-01 5 140554197 140554197 G T PCDHB7 Missense_Mutation p.G594V 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.45) TCGA-33-4583-01 5 140559816 140559816 C T PCDHB8 Missense_Mutation p.P734L 0.32 deleterious_low_confidence(0.01) benign(0.378) TCGA-33-4583-01 5 140573661 140573661 C T PCDHB10 Silent p.H512H 0.20 TCGA-33-4583-01 5 140603986 140603986 G C PCDHB14 Missense_Mutation p.L303F 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-33-4583-01 5 140767870 140767870 T A PCDHGB4 Missense_Mutation p.L140Q 0.42 deleterious(0) probably_damaging(0.997) TCGA-33-4583-01 5 140768532 140768532 G A PCDHGB4 Missense_Mutation p.G361R 0.30 deleterious(0.01) possibly_damaging(0.831) TCGA-33-4583-01 5 150578600 150578600 G A CCDC69 Nonsense_Mutation p.Q93* 0.33 TCGA-33-4583-01 5 156186418 156186418 G T SGCD 3'UTR 0.39 TCGA-33-4583-01 5 156479625 156479625 G C HAVCR1 Silent p.T140T 0.28 TCGA-33-4583-01 5 159776619 159776619 T C C1QTNF2 Silent p.P183P 0.27 TCGA-33-4583-01 5 161324506 161324506 G A GABRA1 3'UTR 0.14 TCGA-33-4583-01 5 170148890 170148890 G A KCNIP1 Missense_Mutation p.G115S 0.31 deleterious(0) probably_damaging(1) TCGA-33-4583-01 5 172507732 172507733 - A CREBRF 5'UTR 0.31 TCGA-33-4583-01 5 176931438 176931438 C A DOK3 Missense_Mutation p.G346V 0.41 tolerated(0.09) benign(0.158) TCGA-33-4583-01 5 178413315 178413315 G T GRM6 Missense_Mutation p.A647D 0.30 deleterious(0.02) benign(0.195) TCGA-33-4583-01 5 24492935 24492935 C A CDH10 Missense_Mutation p.D539Y 0.27 deleterious(0) probably_damaging(0.998) TCGA-33-4583-01 5 24593447 24593447 A G CDH10 Silent p.R51R 0.30 TCGA-33-4583-01 5 31317884 31317884 A T CDH6 Missense_Mutation p.S579C 0.28 deleterious(0) probably_damaging(0.997) TCGA-33-4583-01 5 32390512 32390512 T C ZFR Missense_Mutation p.M671V 0.35 tolerated(0.45) unknown(0) TCGA-33-4583-01 5 33624345 33624345 C G ADAMTS12 Missense_Mutation p.E712Q 0.30 deleterious(0.02) possibly_damaging(0.612) TCGA-33-4583-01 5 33637810 33637810 C A ADAMTS12 Missense_Mutation p.R587L 0.30 deleterious(0) probably_damaging(1) TCGA-33-4583-01 5 34005954 34005954 G T AMACR Missense_Mutation p.P100T 0.14 deleterious(0.02) possibly_damaging(0.749) TCGA-33-4583-01 5 36249727 36249727 G T RANBP3L 3'UTR 0.31 TCGA-33-4583-01 5 37605225 37605225 G T WDR70 Missense_Mutation p.R326L 0.38 deleterious(0) probably_damaging(0.989) TCGA-33-4583-01 5 41004890 41004890 C G MROH2B Missense_Mutation p.G1333R 0.27 deleterious(0) probably_damaging(0.949) TCGA-33-4583-01 5 41019089 41019089 G - MROH2B Frame_Shift_Del p.H825Tfs*21 0.18 TCGA-33-4583-01 5 453949 453949 C T EXOC3 Missense_Mutation p.R277C 0.10 tolerated(0.24) probably_damaging(0.993) TCGA-33-4583-01 5 54398497 54398497 G T GZMA 5'UTR 0.34 TCGA-33-4583-01 5 5462757 5462757 G T KIAA0947 Nonsense_Mutation p.G1104* 0.26 TCGA-33-4583-01 5 55185892 55185892 G T IL31RA Missense_Mutation p.R234L 0.30 deleterious(0) probably_damaging(0.971) TCGA-33-4583-01 5 75594629 75594629 G T SV2C Missense_Mutation p.V505F 0.26 deleterious(0.01) benign(0.211) TCGA-33-4583-01 5 90087132 90087132 A G GPR98 Missense_Mutation p.Y4829C 0.37 probably_damaging(0.926) TCGA-33-4583-01 5 94024292 94024292 C T ANKRD32 Missense_Mutation p.R735W 0.33 tolerated(0.12) benign(0.002) TCGA-33-4583-01 6 105526684 105526684 T A LIN28B 3'UTR 0.19 TCGA-33-4583-01 6 106553407 106553407 C A PRDM1 Missense_Mutation p.H458N 0.11 tolerated(0.07) benign(0.001) TCGA-33-4583-01 6 10961551 10961551 G C SYCP2L Missense_Mutation p.E757Q 0.33 tolerated(0.14) benign(0.357) TCGA-33-4583-01 6 109871492 109871492 A G AK9 Missense_Mutation p.M922T 0.19 tolerated(0.57) benign(0.001) TCGA-33-4583-01 6 117241612 117241612 C T RFX6 Missense_Mutation p.T441I 0.36 tolerated(0.19) benign(0.006) TCGA-33-4583-01 6 12124109 12124109 C T HIVEP1 Missense_Mutation p.R1361W 0.21 deleterious(0) probably_damaging(0.995) TCGA-33-4583-01 6 123600211 123600211 A T TRDN Silent p.P509P 0.53 TCGA-33-4583-01 6 127768025 127768025 G T KIAA0408 Missense_Mutation p.T480N 0.41 tolerated(0.36) benign(0.115) TCGA-33-4583-01 6 129571315 129571316 AA - LAMA2 Frame_Shift_Del p.E614Gfs*16 0.24 TCGA-33-4583-01 6 131481208 131481208 A T AKAP7 Missense_Mutation p.E54V 0.29 tolerated(0.79) benign(0.001) TCGA-33-4583-01 6 144898392 144898392 A G UTRN Missense_Mutation p.I2483V 0.44 tolerated(0.46) benign(0.001) TCGA-33-4583-01 6 146275940 146275940 C A SHPRH Missense_Mutation p.K173N 0.38 tolerated_low_confidence(0.08) benign(0.066) TCGA-33-4583-01 6 155606408 155606408 G A TFB1M Missense_Mutation p.L184F 0.17 deleterious(0.04) probably_damaging(0.995) TCGA-33-4583-01 6 161022046 161022046 C T LPA Silent p.E1010E 0.39 TCGA-33-4583-01 6 161071443 161071443 C A LPA Nonsense_Mutation p.G46* 0.39 TCGA-33-4583-01 6 163991875 163991875 C T QKI 3'UTR 0.04 TCGA-33-4583-01 6 167595375 167595375 G C TCP10L2 Missense_Mutation p.A345P 0.41 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-33-4583-01 6 27215751 27215751 C A PRSS16 Missense_Mutation p.A54E 0.44 tolerated(1) benign(0.013) TCGA-33-4583-01 6 27805777 27805777 G A HIST1H2AK Missense_Mutation p.A114V 0.52 deleterious_low_confidence(0.01) benign(0.117) TCGA-33-4583-01 6 27841217 27841217 G A HIST1H4L Silent p.R24R 0.34 TCGA-33-4583-01 6 2948471 2948471 C G SERPINB6 3'UTR 0.42 TCGA-33-4583-01 6 30121868 30121868 C A TRIM10 Missense_Mutation p.V442L 0.28 deleterious(0) possibly_damaging(0.558) TCGA-33-4583-01 6 30166844 30166844 C T TRIM26 Missense_Mutation p.E13K 0.37 deleterious(0.02) probably_damaging(0.936) TCGA-33-4583-01 6 30955115 30955115 G T MUC21 Missense_Mutation p.S388I 0.31 tolerated(0.12) unknown(0) TCGA-33-4583-01 6 31498659 31498659 T A DDX39B Silent p.T389T 0.36 TCGA-33-4583-01 6 31695071 31695071 C T DDAH2 Silent p.K267K 0.41 TCGA-33-4583-01 6 32007589 32007589 G C CYP21A2 Missense_Mutation p.E239Q 0.26 tolerated(0.57) benign(0.021) TCGA-33-4583-01 6 35392307 35392307 G C PPARD Missense_Mutation p.D277H 0.16 deleterious(0) probably_damaging(0.999) TCGA-33-4583-01 6 43414987 43414987 G T ABCC10 Silent p.G1182G 0.20 TCGA-33-4583-01 6 43582332 43582332 T C POLH 3'UTR 0.47 TCGA-33-4583-01 6 44273518 44273518 C T AARS2 Missense_Mutation p.V436M 0.35 deleterious(0) probably_damaging(0.973) TCGA-33-4583-01 6 49701449 49701449 C A CRISP3 Missense_Mutation p.K153N 0.17 tolerated(0.24) benign(0.048) TCGA-33-4583-01 6 51524709 51524709 G T PKHD1 Nonsense_Mutation p.C3405* 0.35 TCGA-33-4583-01 6 52054093 52054093 G A IL17A 3'UTR 0.36 TCGA-33-4583-01 6 56484784 56484784 T A DST Intron 0.25 TCGA-33-4583-01 6 70877932 70877932 G C COL19A1 Missense_Mutation p.E821Q 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-33-4583-01 6 96053844 96053844 G T MANEA Missense_Mutation p.D318Y 0.10 deleterious(0) probably_damaging(0.98) TCGA-33-4583-01 6 97629824 97629824 G A MMS22L Silent p.C780C 0.39 TCGA-33-4583-01 6 99283327 99283327 C A POU3F2 Missense_Mutation p.P193H 0.45 deleterious(0) possibly_damaging(0.747) TCGA-33-4583-01 7 100084641 100084641 G T NYAP1 Missense_Mutation p.G89V 0.30 deleterious(0) probably_damaging(1) TCGA-33-4583-01 7 100211278 100211278 C T MOSPD3 Missense_Mutation p.P154S 0.29 tolerated(0.41) benign(0.11) TCGA-33-4583-01 7 100608729 100608729 C A MUC3A Missense_Mutation p.A703D 0.20 deleterious(0.02) benign(0.357) TCGA-33-4583-01 7 100677337 100677337 T G MUC17 Silent p.S880S 0.41 TCGA-33-4583-01 7 102517978 102517978 C T FBXL13 Missense_Mutation p.G524E 0.38 tolerated(1) benign(0) TCGA-33-4583-01 7 103137095 103137095 G A RELN Missense_Mutation p.P3024L 0.25 deleterious(0) benign(0.175) TCGA-33-4583-01 7 103143641 103143641 G T RELN Missense_Mutation p.Q2771K 0.31 tolerated(0.86) benign(0.414) TCGA-33-4583-01 7 103194108 103194108 G C RELN Missense_Mutation p.P1990A 0.27 tolerated(0.45) benign(0.149) TCGA-33-4583-01 7 103205999 103205999 C A RELN Splice_Site p.X1646_splice 0.44 TCGA-33-4583-01 7 103322621 103322621 G A RELN Missense_Mutation p.L411F 0.04 deleterious(0.01) probably_damaging(0.994) TCGA-33-4583-01 7 104809643 104809643 C A SRPK2 Missense_Mutation p.W100L 0.36 deleterious(0) probably_damaging(0.993) TCGA-33-4583-01 7 106523475 106523475 T C PIK3CG Intron 0.35 TCGA-33-4583-01 7 106786783 106786783 T C PRKAR2B Silent p.D206D 0.20 TCGA-33-4583-01 7 107545940 107545940 T A DLD Silent p.P191P 0.21 TCGA-33-4583-01 7 111430512 111430512 C T DOCK4 Splice_Site p.X1105_splice 0.34 TCGA-33-4583-01 7 117432076 117432076 G C CTTNBP2 Missense_Mutation p.P392A 0.27 tolerated(0.25) benign(0.012) TCGA-33-4583-01 7 128494159 128494159 C A FLNC Silent p.R2206R 0.56 TCGA-33-4583-01 7 128802338 128802338 C A TSPAN33 Silent p.R88R 0.35 TCGA-33-4583-01 7 134890724 134890724 C A WDR91 Missense_Mutation p.L227F 0.27 deleterious(0) benign(0.254) TCGA-33-4583-01 7 138258362 138258362 A G TRIM24 Silent p.S663S 0.28 TCGA-33-4583-01 7 138487700 138487700 C T TMEM213 Silent p.Y70Y 0.38 TCGA-33-4583-01 7 13950876 13950876 T A ETV1 Missense_Mutation p.S287C 0.26 deleterious(0.01) possibly_damaging(0.7) TCGA-33-4583-01 7 13971314 13971314 C T ETV1 Silent p.R205R 0.41 TCGA-33-4583-01 7 143175842 143175842 G C TAS2R41 Missense_Mutation p.V293L 0.33 tolerated(0.13) benign(0.114) TCGA-33-4583-01 7 144098414 144098414 C - NOBOX Frame_Shift_Del p.G190Efs*3 0.24 TCGA-33-4583-01 7 144098981 144098981 C - NOBOX Frame_Shift_Del p.R93Gfs*81 0.19 TCGA-33-4583-01 7 149420915 149420915 G T KRBA1 Missense_Mutation p.S288I 0.46 deleterious(0) possibly_damaging(0.884) TCGA-33-4583-01 7 150324891 150324891 C A GIMAP6 Missense_Mutation p.E265D 0.28 tolerated(0.57) benign(0.005) TCGA-33-4583-01 7 155530995 155530995 G T RBM33 Missense_Mutation p.Q545H 0.27 deleterious(0) benign(0.387) TCGA-33-4583-01 7 156798509 156798509 T C MNX1 Missense_Mutation p.E304G 0.28 deleterious(0) probably_damaging(0.932) TCGA-33-4583-01 7 158851172 158851172 C A VIPR2 Missense_Mutation p.R152M 0.31 deleterious(0) probably_damaging(0.983) TCGA-33-4583-01 7 23391040 23391040 G T IGF2BP3 Silent p.S189S 0.31 TCGA-33-4583-01 7 27150363 27150363 G T HOXA3 5'UTR 0.50 TCGA-33-4583-01 7 28527826 28527826 G C CREB5 Missense_Mutation p.E13Q 0.29 deleterious(0) probably_damaging(0.964) TCGA-33-4583-01 7 30469038 30469038 G T NOD1 Missense_Mutation p.A914D 0.25 tolerated(0.35) possibly_damaging(0.701) TCGA-33-4583-01 7 31124405 31124405 C G ADCYAP1R1 Silent p.S164S 0.32 TCGA-33-4583-01 7 38370157 38370157 A C TRGV8 Missense_Mutation p.N47K 0.24 tolerated(0.29) benign(0.037) TCGA-33-4583-01 7 38794492 38794492 C A VPS41 Intron 0.35 TCGA-33-4583-01 7 4188935 4188935 G T SDK1 Nonsense_Mutation p.E1489* 0.24 TCGA-33-4583-01 7 43400557 43400557 C A HECW1 Missense_Mutation p.T178K 0.29 deleterious(0.03) possibly_damaging(0.644) TCGA-33-4583-01 7 43918822 43918822 C A URGCP Missense_Mutation p.L80F 0.22 deleterious(0) probably_damaging(0.989) TCGA-33-4583-01 7 44576449 44576449 C A NPC1L1 Missense_Mutation p.G558V 0.26 deleterious(0) probably_damaging(0.996) TCGA-33-4583-01 7 56127249 56127249 T A CCT6A Silent p.A327A 0.35 TCGA-33-4583-01 7 75442680 75442680 G A CCL24 Silent p.N45N 0.23 TCGA-33-4583-01 7 75651307 75651307 T C STYXL1 Missense_Mutation p.N57D 0.40 tolerated(0.64) benign(0.004) TCGA-33-4583-01 7 80141170 80141170 C T GNAT3 Missense_Mutation p.E25K 0.25 tolerated(0.38) possibly_damaging(0.471) TCGA-33-4583-01 7 86415633 86415633 C T GRM3 Silent p.S175S 0.33 TCGA-33-4583-01 7 95499272 95499272 A G DYNC1I1 Missense_Mutation p.K168R 0.40 deleterious(0) possibly_damaging(0.887) TCGA-33-4583-01 8 100831673 100831673 C A VPS13B Silent p.P2910P 0.22 TCGA-33-4583-01 8 100871568 100871568 C G VPS13B Missense_Mutation p.P3660R 0.34 deleterious(0) possibly_damaging(0.804) TCGA-33-4583-01 8 101074868 101074868 G T RGS22 Missense_Mutation p.H489N 0.29 tolerated(0.07) benign(0.18) TCGA-33-4583-01 8 101083755 101083756 - T RGS22 Frame_Shift_Ins p.L146Ifs*37 0.31 TCGA-33-4583-01 8 10466396 10466396 G A RP1L1 Missense_Mutation p.P1738S 0.28 unknown(0) TCGA-33-4583-01 8 105361464 105361464 C A DCSTAMP Silent p.G228G 0.36 TCGA-33-4583-01 8 108264188 108264188 C A ANGPT1 Silent p.A464A 0.28 TCGA-33-4583-01 8 11180283 11180283 C - MTMR9 Frame_Shift_Del p.Q546Rfs*38 0.23 TCGA-33-4583-01 8 113318247 113318247 G T CSMD3 Missense_Mutation p.P2687H 0.27 deleterious(0) probably_damaging(0.996) TCGA-33-4583-01 8 11607694 11607694 G A GATA4 Silent p.A286A 0.39 TCGA-33-4583-01 8 120592360 120592360 T C ENPP2 Silent p.T644T 0.30 TCGA-33-4583-01 8 124553144 124553144 G A FBXO32 Silent p.L37L 0.38 TCGA-33-4583-01 8 125531058 125531058 C A TATDN1 Splice_Site p.X68_splice 0.25 TCGA-33-4583-01 8 125531107 125531107 C A TATDN1 Nonsense_Mutation p.G52* 0.29 TCGA-33-4583-01 8 131859754 131859754 C T ADCY8 Nonsense_Mutation p.W806* 0.24 TCGA-33-4583-01 8 139323161 139323161 T C FAM135B Missense_Mutation p.Y27C 0.35 deleterious(0) probably_damaging(0.962) TCGA-33-4583-01 8 139614404 139614404 T A COL22A1 Splice_Site p.X1381_splice 0.28 TCGA-33-4583-01 8 143922606 143922606 C A GML Missense_Mutation p.P49Q 0.22 tolerated(0.28) probably_damaging(0.929) TCGA-33-4583-01 8 144463991 144463991 G C RHPN1 Missense_Mutation p.K550N 0.28 deleterious(0) possibly_damaging(0.559) TCGA-33-4583-01 8 145623947 145623947 A T CPSF1 Missense_Mutation p.F574I 0.04 deleterious(0.04) possibly_damaging(0.838) TCGA-33-4583-01 8 19811777 19811777 G T LPL Missense_Mutation p.V230F 0.29 tolerated(0.06) probably_damaging(0.97) TCGA-33-4583-01 8 23423751 23423751 C T SLC25A37 Missense_Mutation p.A114V 0.33 deleterious(0) probably_damaging(0.995) TCGA-33-4583-01 8 25222158 25222158 A G DOCK5 Missense_Mutation p.I1021V 0.14 tolerated(0.1) benign(0.004) TCGA-33-4583-01 8 27729306 27729306 C A SCARA5 3'UTR 0.34 TCGA-33-4583-01 8 30407060 30407060 C A RBPMS 3'Flank 0.27 TCGA-33-4583-01 8 32505483 32505483 G T NRG1 Intron 0.33 TCGA-33-4583-01 8 35401985 35401985 A T UNC5D Intron 0.34 TCGA-33-4583-01 8 37730039 37730039 C A RAB11FIP1 Nonsense_Mutation p.E761* 0.31 TCGA-33-4583-01 8 43147760 43147760 G T POTEA RNA 0.32 TCGA-33-4583-01 8 57025797 57025797 C - MOS Frame_Shift_Del p.E249Sfs*3 0.30 TCGA-33-4583-01 8 67509581 67509581 T C MYBL1 Missense_Mutation p.K166E 0.59 deleterious(0) probably_damaging(0.998) TCGA-33-4583-01 8 68007903 68007903 G T CSPP1 Missense_Mutation p.D296Y 0.32 deleterious(0.04) probably_damaging(0.945) TCGA-33-4583-01 8 77895397 77895397 C A PEX2 3'UTR 0.39 TCGA-33-4583-01 8 77895398 77895398 A T PEX2 3'UTR 0.38 TCGA-33-4583-01 8 8175875 8175875 C - SGK223 Frame_Shift_Del p.G1337Afs*17 0.42 TCGA-33-4583-01 8 87242189 87242189 C A SLC7A13 Silent p.G106G 0.29 TCGA-33-4583-01 9 100849622 100849622 G A TRIM14 3'UTR 0.12 TCGA-33-4583-01 9 104499756 104499756 G T GRIN3A Missense_Mutation p.P169H 0.65 deleterious(0) possibly_damaging(0.599) TCGA-33-4583-01 9 113149732 113149732 C G SVEP1 Missense_Mutation p.R3298T 0.42 benign(0.007) TCGA-33-4583-01 9 115200823 115200823 T - HSDL2 Frame_Shift_Del p.F238Lfs*12 0.40 TCGA-33-4583-01 9 117069976 117069976 G T COL27A1 Missense_Mutation p.G1712V 0.57 unknown(0) TCGA-33-4583-01 9 120475243 120475243 C A TLR4 Silent p.G279G 0.69 TCGA-33-4583-01 9 127563756 127563756 G C OLFML2A Missense_Mutation p.D245H 0.07 deleterious(0.02) possibly_damaging(0.731) TCGA-33-4583-01 9 130207074 130207074 G T ZNF79 Silent p.A365A 0.49 TCGA-33-4583-01 9 130536708 130536708 G T SH2D3C Missense_Mutation p.L26I 0.10 tolerated(0.43) benign(0.011) TCGA-33-4583-01 9 130656962 130656962 C A ST6GALNAC6 Silent p.R42R 0.64 TCGA-33-4583-01 9 135114558 135114558 C T NTNG2 Silent p.V374V 0.64 TCGA-33-4583-01 9 135862758 135862758 C A GFI1B Missense_Mutation p.P64T 0.14 tolerated(0.12) benign(0.001) TCGA-33-4583-01 9 138387325 138387325 C T C9orf116 Missense_Mutation p.R120Q 0.05 deleterious(0.03) possibly_damaging(0.677) TCGA-33-4583-01 9 139401756 139401756 C A NOTCH1 Splice_Site p.X1215_splice 0.59 TCGA-33-4583-01 9 139401757 139401757 C A NOTCH1 Missense_Mutation p.G1215C 0.59 deleterious(0) probably_damaging(0.999) TCGA-33-4583-01 9 139726193 139726193 G T RABL6 Missense_Mutation p.R160L 0.04 deleterious(0) probably_damaging(0.955) TCGA-33-4583-01 9 140509484 140509484 G T ARRDC1 Intron 0.63 TCGA-33-4583-01 9 19316473 19316473 C T DENND4C Silent p.L516L 0.13 TCGA-33-4583-01 9 35076575 35076575 C G FANCG Missense_Mutation p.L310F 0.11 deleterious(0) probably_damaging(0.999) TCGA-33-4583-01 9 36087893 36087893 T C RECK Silent p.P280P 0.55 TCGA-33-4583-01 9 36665428 36665428 T C MELK Silent p.L420L 0.24 TCGA-33-4583-01 9 396932 396932 A G DOCK8 Missense_Mutation p.K1040E 0.74 deleterious(0.02) benign(0.26) TCGA-33-4583-01 9 4844532 4844532 G T RCL1 Missense_Mutation p.G240C 0.77 deleterious(0) probably_damaging(1) TCGA-33-4583-01 9 67951985 67951985 A G ANKRD20A1 Silent p.K316K 0.34 TCGA-33-4583-01 9 74477424 74477424 C A ABHD17B 3'UTR 0.60 TCGA-33-4583-01 9 74477425 74477425 C A ABHD17B 3'UTR 0.59 TCGA-33-4583-01 9 79917921 79917921 G T VPS13A Missense_Mutation p.W1301C 0.08 tolerated(0.06) possibly_damaging(0.76) TCGA-33-4583-01 9 80919698 80919698 G A PSAT1 Missense_Mutation p.C80Y 0.07 deleterious(0.02) benign(0.263) TCGA-33-4583-01 9 85616037 85616037 C A RASEF Missense_Mutation p.R404L 0.62 tolerated(0.19) possibly_damaging(0.676) TCGA-33-4583-01 9 86451834 86451834 T A KIF27 3'UTR 0.59 TCGA-33-4583-01 X 101909538 101909538 G T GPRASP1 Missense_Mutation p.A233S 0.64 tolerated(0.23) benign(0.18) TCGA-33-4583-01 X 105279351 105279351 T C SERPINA7 Silent p.P216P 0.58 TCGA-33-4583-01 X 109764981 109764981 C A TDGF1P3 RNA 0.75 TCGA-33-4583-01 X 117700047 117700047 A T DOCK11 Missense_Mutation p.Q258L 0.67 tolerated(0.32) benign(0.183) TCGA-33-4583-01 X 128709967 128709967 C T OCRL Missense_Mutation p.P603S 0.66 tolerated(0.28) benign(0.048) TCGA-33-4583-01 X 1317479 1317479 G T CRLF2 Missense_Mutation p.P196T 0.48 tolerated(0.07) possibly_damaging(0.7) TCGA-33-4583-01 X 135429395 135429395 T C GPR112 Missense_Mutation p.V1177A 0.74 tolerated(0.24) benign(0.012) TCGA-33-4583-01 X 140994995 140994995 G T MAGEC1 Missense_Mutation p.G602V 0.62 deleterious_low_confidence(0.03) probably_damaging(0.953) TCGA-33-4583-01 X 146360842 146360842 G A MIR514A1 RNA 0.71 TCGA-33-4583-01 X 152936760 152936760 C A PNCK Silent p.L281L 0.78 TCGA-33-4583-01 X 153279680 153279680 C A IRAK1 Missense_Mutation p.S451I 0.65 deleterious(0.02) possibly_damaging(0.866) TCGA-33-4583-01 X 18845392 18845392 A T PPEF1 Splice_Site p.X584_splice 0.66 TCGA-33-4583-01 X 29301304 29301304 A C IL1RAPL1 Missense_Mutation p.Q111P 0.51 deleterious(0.02) benign(0.092) TCGA-33-4583-01 X 30261141 30261142 CC A MAGEB4 Frame_Shift_Del p.P297Tfs*12 0.55 TCGA-33-4583-01 X 3544547 3544547 G A PRKX Missense_Mutation p.P243L 0.79 deleterious(0) probably_damaging(0.997) TCGA-33-4583-01 X 48542368 48542368 A G WAS Silent p.K42K 0.61 TCGA-33-4583-01 X 49161385 49161385 A T GAGE10 Missense_Mutation p.Y16F 0.69 tolerated(0.63) benign(0.038) TCGA-33-4583-01 X 52847274 52847274 C A XAGE5 3'UTR 0.59 TCGA-33-4583-01 X 57313335 57313335 G T FAAH2 Missense_Mutation p.R26L 0.40 tolerated(0.47) benign(0) TCGA-33-4583-01 X 5811062 5811062 G A NLGN4X Silent p.H749H 0.25 TCGA-33-4583-01 X 64137693 64137693 G T ZC4H2 Silent p.P215P 0.64 TCGA-33-4583-01 X 71359733 71359733 C T NHSL2 Missense_Mutation p.P779S 0.58 tolerated(0.06) benign(0.016) TCGA-33-4583-01 X 84563147 84563147 G A POF1B Missense_Mutation p.L345F 0.68 deleterious(0) probably_damaging(0.999) TCGA-33-4583-01 X 99661673 99661673 G A PCDH19 Silent p.I641I 0.62 TCGA-33-4586-01 10 11505306 11505306 C A USP6NL Missense_Mutation p.D558Y 0.32 deleterious_low_confidence(0) possibly_damaging(0.771) TCGA-33-4586-01 10 118434309 118434309 C T HSPA12A Missense_Mutation p.D671N 0.38 deleterious(0) probably_damaging(0.923) TCGA-33-4586-01 10 124358454 124358454 T A DMBT1 Missense_Mutation p.S1041T 0.40 deleterious(0.01) unknown(0) TCGA-33-4586-01 10 124754084 124754084 T C IKZF5 Missense_Mutation p.R158G 0.46 deleterious(0) probably_damaging(0.95) TCGA-33-4586-01 10 126370538 126370538 C A FAM53B Missense_Mutation p.D182Y 0.41 tolerated(1) benign(0.344) TCGA-33-4586-01 10 18629858 18629858 G T CACNB2 Intron 0.41 TCGA-33-4586-01 10 44053146 44053146 C A ZNF239 Missense_Mutation p.A128S 0.38 tolerated(0.24) benign(0.039) TCGA-33-4586-01 10 46999982 46999982 C G GPRIN2 Missense_Mutation p.L368V 0.32 tolerated(0.14) benign(0.033) TCGA-33-4586-01 10 53893617 53893617 C - PRKG1 Frame_Shift_Del p.A318Efs*3 0.30 TCGA-33-4586-01 10 76797658 76797658 A T DUPD1 Missense_Mutation p.L200Q 0.44 deleterious(0) probably_damaging(1) TCGA-33-4586-01 10 7762836 7762836 C G ITIH2 Missense_Mutation p.I216M 0.34 deleterious(0.01) benign(0.03) TCGA-33-4586-01 10 87489309 87489309 G A GRID1 Silent p.S432S 0.05 TCGA-33-4586-01 10 88446827 88446827 G C LDB3 Missense_Mutation p.A231P 0.31 tolerated(0.09) probably_damaging(0.943) TCGA-33-4586-01 11 100211382 100211382 G A CNTN5 Splice_Site p.X973_splice 0.35 TCGA-33-4586-01 11 100909920 100909920 G A PGR Missense_Mutation p.S910F 0.11 deleterious(0) probably_damaging(0.982) TCGA-33-4586-01 11 117050006 117050006 G C SIDT2 Missense_Mutation p.L9F 0.06 tolerated_low_confidence(0.06) benign(0.021) TCGA-33-4586-01 11 118074380 118074380 C A AMICA1 Nonsense_Mutation p.E179* 0.28 TCGA-33-4586-01 11 118272382 118272382 T C ATP5L Translation_Start_Site p.M1? 0.19 deleterious(0) possibly_damaging(0.588) TCGA-33-4586-01 11 122720898 122720898 A G CRTAM Missense_Mutation p.T57A 0.19 tolerated(0.27) probably_damaging(1) TCGA-33-4586-01 11 15197542 15197542 C T INSC Silent p.H151H 0.67 TCGA-33-4586-01 11 17742502 17742502 C T MYOD1 Silent p.G228G 0.37 TCGA-33-4586-01 11 20070399 20070399 G C NAV2 Missense_Mutation p.G1366A 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-33-4586-01 11 22283735 22283735 A G ANO5 Missense_Mutation p.Q564R 0.19 deleterious(0) possibly_damaging(0.859) TCGA-33-4586-01 11 22770670 22770670 G C GAS2 Missense_Mutation p.G160R 0.29 deleterious(0.03) probably_damaging(0.978) TCGA-33-4586-01 11 30925176 30925176 A G DCDC1 Missense_Mutation p.Y1455H 0.28 deleterious(0) possibly_damaging(0.607) TCGA-33-4586-01 11 43283754 43283754 C T HNRNPKP3 RNA 0.19 TCGA-33-4586-01 11 45923535 45923535 C A MAPK8IP1 Missense_Mutation p.T176K 0.16 deleterious(0) probably_damaging(0.998) TCGA-33-4586-01 11 46564660 46564660 G A AMBRA1 Intron 0.36 TCGA-33-4586-01 11 47496998 47496998 G C CELF1 Missense_Mutation p.T386S 0.20 tolerated(0.74) benign(0.12) TCGA-33-4586-01 11 55595083 55595083 T C OR5L2 Missense_Mutation p.L130P 0.32 deleterious(0) probably_damaging(0.999) TCGA-33-4586-01 11 55606825 55606825 C T OR5D16 Missense_Mutation p.L200F 0.36 deleterious(0.03) benign(0.35) TCGA-33-4586-01 11 55681359 55681359 T C OR5W2 Missense_Mutation p.R234G 0.30 deleterious(0.02) benign(0.288) TCGA-33-4586-01 11 55890198 55890198 C T OR8H3 Missense_Mutation p.S117L 0.34 tolerated(0.16) benign(0.077) TCGA-33-4586-01 11 56020497 56020497 C A OR5T3 Missense_Mutation p.H274Q 0.17 deleterious(0.01) probably_damaging(0.968) TCGA-33-4586-01 11 56058198 56058198 A T OR8H1 Missense_Mutation p.L114H 0.17 deleterious(0) probably_damaging(1) TCGA-33-4586-01 11 56258324 56258324 G C OR5M8 Missense_Mutation p.H175D 0.34 deleterious(0) probably_damaging(0.997) TCGA-33-4586-01 11 58170159 58170159 G T OR5B3 Missense_Mutation p.H242N 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-33-4586-01 11 6190584 6190584 T C OR52B2 3'UTR 0.27 TCGA-33-4586-01 11 64453274 64453274 C G NRXN2 Missense_Mutation p.K332N 0.28 tolerated(0.07) benign(0.015) TCGA-33-4586-01 11 6655498 6655498 G T DCHS1 Missense_Mutation p.L613I 0.18 tolerated(0.49) benign(0.326) TCGA-33-4586-01 11 6898035 6898035 G T OR10A4 Missense_Mutation p.D53Y 0.30 deleterious(0) probably_damaging(0.926) TCGA-33-4586-01 11 71820959 71820965 TGCCTTC - ANAPC15 Frame_Shift_Del p.E110Tfs*9 0.15 TCGA-33-4586-01 11 72290644 72290644 G A PDE2A Silent p.H730H 0.38 TCGA-33-4586-01 11 73789655 73789655 T C C2CD3 Missense_Mutation p.T1370A 0.21 tolerated(1) benign(0.012) TCGA-33-4586-01 11 85436701 85436701 G T SYTL2 Missense_Mutation p.P267T 0.18 tolerated(0.15) benign(0.03) TCGA-33-4586-01 11 88780906 88780906 G T GRM5 Missense_Mutation p.H45Q 0.17 tolerated(0.06) probably_damaging(0.981) TCGA-33-4586-01 12 104056738 104056738 C T STAB2 Missense_Mutation p.P662S 0.24 deleterious(0) possibly_damaging(0.729) TCGA-33-4586-01 12 109292474 109292474 G T DAO Nonsense_Mutation p.G239* 0.24 TCGA-33-4586-01 12 109650737 109650737 C T ACACB Nonsense_Mutation p.Q1116* 0.23 TCGA-33-4586-01 12 125509875 125509875 A T BRI3BP Missense_Mutation p.S219C 0.30 deleterious_low_confidence(0) probably_damaging(0.911) TCGA-33-4586-01 12 130184571 130184571 C A TMEM132D Missense_Mutation p.R251L 0.24 deleterious(0.04) benign(0.083) TCGA-33-4586-01 12 132562020 132562020 C T EP400 Silent p.T3058T 0.32 TCGA-33-4586-01 12 133201511 133201511 C A POLE Missense_Mutation p.A2243S 0.24 tolerated(0.71) benign(0.001) TCGA-33-4586-01 12 21196447 21196447 G A SLCO1B7 Missense_Mutation p.D256N 0.09 deleterious(0.04) benign(0.022) TCGA-33-4586-01 12 21531441 21531441 T A IAPP 3'UTR 0.40 TCGA-33-4586-01 12 30868013 30868013 G A CAPRIN2 Nonsense_Mutation p.Q794* 0.32 TCGA-33-4586-01 12 32134684 32134684 A G KIAA1551 Silent p.P265P 0.35 TCGA-33-4586-01 12 41419027 41419027 A G CNTN1 Missense_Mutation p.R867G 0.30 deleterious(0.01) probably_damaging(0.928) TCGA-33-4586-01 12 41966513 41966513 C T PDZRN4 Silent p.D644D 0.33 TCGA-33-4586-01 12 43822469 43822469 C G ADAMTS20 Missense_Mutation p.C1208S 0.28 deleterious(0) probably_damaging(0.959) TCGA-33-4586-01 12 43944852 43944852 T A ADAMTS20 Missense_Mutation p.T105S 0.33 tolerated(0.13) benign(0.139) TCGA-33-4586-01 12 54427303 54427303 C A HOXC5 Missense_Mutation p.Q133K 0.56 tolerated(0.71) benign(0.064) TCGA-33-4586-01 12 58017644 58017644 T A SLC26A10 Missense_Mutation p.V360E 0.24 deleterious(0) probably_damaging(0.979) TCGA-33-4586-01 12 65632464 65632464 C T LEMD3 Silent p.G597G 0.25 TCGA-33-4586-01 12 68716991 68716991 T A MDM1 Silent p.P221P 0.25 TCGA-33-4586-01 12 6954923 6954923 C T GNB3 Silent p.D291D 0.32 TCGA-33-4586-01 12 70206564 70206564 T C RAB3IP Silent p.C395C 0.31 TCGA-33-4586-01 12 72372760 72372760 G A TPH2 Silent p.V278V 0.29 TCGA-33-4586-01 12 72969167 72969167 A T TRHDE Missense_Mutation p.E710V 0.25 deleterious(0.04) benign(0.147) TCGA-33-4586-01 12 8281903 8281903 A G CLEC4A Silent p.T81T 0.24 TCGA-33-4586-01 12 88505121 88505121 T C CEP290 Missense_Mutation p.H742R 0.26 benign(0.009) TCGA-33-4586-01 12 9313702 9313702 C G PZP Silent p.V933V 0.20 TCGA-33-4586-01 12 9313712 9313712 C A PZP Missense_Mutation p.G930V 0.20 deleterious(0.03) possibly_damaging(0.726) TCGA-33-4586-01 12 97112245 97112245 G T C12orf55 Missense_Mutation p.S2250I 0.20 tolerated(0.18) benign(0.001) TCGA-33-4586-01 12 97133762 97133762 C T C12orf55 Missense_Mutation p.L2332F 0.26 deleterious(0.01) benign(0.168) TCGA-33-4586-01 13 102367951 102367951 G T ITGBL1 Missense_Mutation p.D478Y 0.41 deleterious(0.02) possibly_damaging(0.786) TCGA-33-4586-01 13 32835816 32835816 T A FRY Missense_Mutation p.C2494S 0.58 tolerated(0.52) benign(0.002) TCGA-33-4586-01 13 33096393 33096393 C A N4BP2L2 Missense_Mutation p.D38Y 0.38 deleterious(0.01) probably_damaging(0.91) TCGA-33-4586-01 13 43180990 43180990 C T TNFSF11 Missense_Mutation p.S297F 0.43 deleterious(0.02) benign(0.326) TCGA-33-4586-01 13 70681734 70681734 G T KLHL1 Missense_Mutation p.A33E 0.40 tolerated_low_confidence(0.5) benign(0.053) TCGA-33-4586-01 14 101452443 101452443 G A SNORD114-25 RNA 0.47 TCGA-33-4586-01 14 103931944 103931944 C T MARK3 Silent p.F197F 0.14 TCGA-33-4586-01 14 20483236 20483236 C A OR4K14 Missense_Mutation p.M39I 0.27 tolerated(0.19) benign(0) TCGA-33-4586-01 14 20665548 20665548 T C OR11G2 Silent p.C18C 0.37 TCGA-33-4586-01 14 20692683 20692683 C A OR11H6 Missense_Mutation p.T272N 0.37 deleterious(0) possibly_damaging(0.772) TCGA-33-4586-01 14 24524987 24524987 C T LRRC16B Silent p.A253A 0.39 TCGA-33-4586-01 14 31381003 31381003 G C STRN3 Missense_Mutation p.I526M 0.19 deleterious(0) probably_damaging(0.925) TCGA-33-4586-01 14 51290052 51290052 T C NIN Intron 0.30 TCGA-33-4586-01 14 80677661 80677661 C A DIO2 Missense_Mutation p.R52L 0.55 deleterious(0.01) probably_damaging(0.943) TCGA-33-4586-01 14 89163203 89163203 C A EML5 Missense_Mutation p.V778F 0.35 deleterious(0.02) benign(0.122) TCGA-33-4586-01 14 92139233 92139233 C A CATSPERB Missense_Mutation p.G369V 0.43 deleterious(0.04) probably_damaging(1) TCGA-33-4586-01 14 92185772 92185772 T A CATSPERB Silent p.T120T 0.40 TCGA-33-4586-01 14 93107667 93107667 G T RIN3 Silent p.L175L 0.50 TCGA-33-4586-01 15 22841050 22841050 G T TUBGCP5 Missense_Mutation p.D140Y 0.31 deleterious(0.01) benign(0.396) TCGA-33-4586-01 15 23412184 23412184 C G RP11-467N20.5 Missense_Mutation p.E91D 0.15 possibly_damaging(0.86) TCGA-33-4586-01 15 24922681 24922681 C A NPAP1 Missense_Mutation p.T556N 0.40 deleterious(0.04) probably_damaging(0.983) TCGA-33-4586-01 15 25444451 25444451 C A SNORD115-14 3'Flank 0.69 TCGA-33-4586-01 15 25449585 25449585 C A SNORD115-19 RNA 0.41 TCGA-33-4586-01 15 25490629 25490629 C A SNORD115-41 RNA 0.39 TCGA-33-4586-01 15 25924963 25924963 C A ATP10A Missense_Mutation p.R1342M 0.35 tolerated(0.06) benign(0.027) TCGA-33-4586-01 15 29346393 29346393 C T APBA2 Silent p.R102R 0.50 TCGA-33-4586-01 15 32935913 32935913 C G SCG5 Missense_Mutation p.I40M 0.42 deleterious_low_confidence(0.02) probably_damaging(0.978) TCGA-33-4586-01 15 35044940 35044940 G T GJD2 Silent p.P235P 0.35 TCGA-33-4586-01 15 48782176 48782176 C A FBN1 Missense_Mutation p.G985V 0.17 probably_damaging(1) TCGA-33-4586-01 15 68618991 68618991 C A ITGA11 Splice_Site p.X737_splice 0.29 TCGA-33-4586-01 15 69011811 69011811 G T CORO2B Missense_Mutation p.A411S 0.34 tolerated(0.33) benign(0.007) TCGA-33-4586-01 15 75047333 75047333 G A CYP1A2 Silent p.P485P 0.44 TCGA-33-4586-01 15 78398097 78398097 C A CIB2 Missense_Mutation p.A176S 0.10 tolerated(0.56) benign(0.256) TCGA-33-4586-01 15 79603747 79603747 C G TMED3 Silent p.S52S 0.35 TCGA-33-4586-01 15 81625008 81625008 A T TMC3 Missense_Mutation p.F1019I 0.12 tolerated_low_confidence(0.57) benign(0.001) TCGA-33-4586-01 16 1842028 1842028 G T IGFALS Silent p.R169R 0.43 TCGA-33-4586-01 16 20471499 20471499 C A ACSM2A Silent p.R21R 0.30 TCGA-33-4586-01 16 20559758 20559758 G T ACSM2B Missense_Mutation p.A311D 0.24 deleterious(0) probably_damaging(0.982) TCGA-33-4586-01 16 24373310 24373310 A T CACNG3 3'UTR 0.56 TCGA-33-4586-01 16 25255346 25255346 C A ZKSCAN2 Missense_Mutation p.A581S 0.28 tolerated(0.53) probably_damaging(0.991) TCGA-33-4586-01 16 30119569 30119569 T C GDPD3 Missense_Mutation p.S262G 0.32 tolerated(0.06) benign(0.333) TCGA-33-4586-01 16 30369819 30369819 G A TBC1D10B Missense_Mutation p.R625W 0.55 deleterious(0) probably_damaging(0.943) TCGA-33-4586-01 16 30435500 30435500 C A DCTPP1 3'UTR 0.21 TCGA-33-4586-01 16 3063914 3063914 C T CLDN9 Missense_Mutation p.T184M 0.27 deleterious(0) probably_damaging(0.961) TCGA-33-4586-01 16 3119200 3119200 G T IL32 Silent p.L137L 0.18 TCGA-33-4586-01 16 33020703 33020703 G T IGHV3OR16-8 Silent p.L37L 0.24 TCGA-33-4586-01 16 56624791 56624791 C G MT3 Missense_Mutation p.A46G 0.43 deleterious(0.02) unknown(0) TCGA-33-4586-01 16 7721577 7721577 T C RBFOX1 Silent p.P323P 0.25 TCGA-33-4586-01 16 825589 825589 C A MSLNL Missense_Mutation p.W391L 0.17 benign(0) TCGA-33-4586-01 16 90128620 90128620 G T PRDM7 Intron 0.56 TCGA-33-4586-01 17 10304656 10304656 G T MYH8 Missense_Mutation p.A1015E 0.42 deleterious(0.02) benign(0.424) TCGA-33-4586-01 17 11687649 11687649 G T DNAH9 Silent p.P2618P 0.44 TCGA-33-4586-01 17 18638308 18638308 C T TRIM16L Silent p.S194S 0.36 TCGA-33-4586-01 17 33520841 33520841 C A SLC35G3 Silent p.L162L 0.26 TCGA-33-4586-01 17 3417929 3417929 C T TRPV3 Missense_Mutation p.V746I 0.41 tolerated(0.1) probably_damaging(0.997) TCGA-33-4586-01 17 34493456 34493456 G T TBC1D3B Missense_Mutation p.D523E 0.47 tolerated_low_confidence(0.25) benign(0.033) TCGA-33-4586-01 17 36093605 36093605 G T HNF1B Silent p.R252R 0.31 TCGA-33-4586-01 17 39087664 39087664 A T KRT23 Missense_Mutation p.I147N 0.31 deleterious(0) probably_damaging(0.966) TCGA-33-4586-01 17 45822456 45822456 G A TBX21 Silent p.P444P 0.33 TCGA-33-4586-01 17 51901693 51901693 G T KIF2B Silent p.L433L 0.18 TCGA-33-4586-01 17 55183423 55183423 G T AKAP1 Missense_Mutation p.G200C 0.31 deleterious(0) possibly_damaging(0.789) TCGA-33-4586-01 17 58256732 58256732 G A USP32 Nonsense_Mutation p.Q1567* 0.36 TCGA-33-4586-01 17 65850849 65850849 A T BPTF Missense_Mutation p.K469N 0.27 probably_damaging(0.979) TCGA-33-4586-01 17 72436491 72436491 C T GPRC5C Silent p.S237S 0.42 TCGA-33-4586-01 17 73870527 73870527 G A TRIM47 3'UTR 0.35 TCGA-33-4586-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.46 deleterious(0) probably_damaging(1) TCGA-33-4586-01 17 76497289 76497289 C A DNAH17 Silent p.L1806L 0.26 TCGA-33-4586-01 17 78320176 78320176 G T RNF213 Missense_Mutation p.V2681F 0.07 probably_damaging(0.966) TCGA-33-4586-01 18 10487919 10487919 G T APCDD1 Missense_Mutation p.A477S 0.29 tolerated(0.91) benign(0.003) TCGA-33-4586-01 18 32374114 32374114 A G DTNA Missense_Mutation p.I88V 0.26 tolerated(0.2) benign(0.045) TCGA-33-4586-01 18 34839211 34839211 G T CELF4 Missense_Mutation p.N422K 0.26 deleterious(0) benign(0.16) TCGA-33-4586-01 18 43316432 43316432 C A SLC14A1 Nonsense_Mutation p.S217* 0.25 TCGA-33-4586-01 18 65181475 65181475 T G DSEL Missense_Mutation p.N134T 0.29 deleterious(0) probably_damaging(0.999) TCGA-33-4586-01 18 77470345 77470345 G T CTDP1 Splice_Site p.X258_splice 0.28 TCGA-33-4586-01 19 14065389 14065389 C G DCAF15 Silent p.T94T 0.44 TCGA-33-4586-01 19 14080949 14080949 G A RFX1 Silent p.G451G 0.18 TCGA-33-4586-01 19 15281167 15281167 C A NOTCH3 Missense_Mutation p.V1697L 0.13 tolerated(0.39) benign(0.046) TCGA-33-4586-01 19 17132869 17132869 G T CPAMD8 Missense_Mutation p.P119Q 0.16 tolerated(0.58) benign(0.021) TCGA-33-4586-01 19 30934517 30934517 A T ZNF536 Missense_Mutation p.E16D 0.26 tolerated_low_confidence(0.74) probably_damaging(0.986) TCGA-33-4586-01 19 31770074 31770074 T A TSHZ3 Missense_Mutation p.T209S 0.19 deleterious(0.02) benign(0.089) TCGA-33-4586-01 19 33703209 33703209 A T SLC7A10 Silent p.V259V 0.52 TCGA-33-4586-01 19 34869911 34869911 G A GPI Splice_Site p.X246_splice 0.46 TCGA-33-4586-01 19 36353460 36353460 A T KIRREL2 Missense_Mutation p.I526F 0.47 tolerated(0.23) benign(0.04) TCGA-33-4586-01 19 41903744 41903744 G T BCKDHA Silent p.A4A 0.38 TCGA-33-4586-01 19 42092216 42092216 A G CEACAM21 Missense_Mutation p.I292V 0.67 tolerated_low_confidence(1) benign(0.001) TCGA-33-4586-01 19 43343915 43343915 A G PSG10P 3'Flank 0.09 TCGA-33-4586-01 19 45262878 45262879 - T BCL3 3'UTR 0.44 TCGA-33-4586-01 19 46216747 46216747 G A FBXO46 Missense_Mutation p.R3C 0.29 deleterious_low_confidence(0) benign(0.266) TCGA-33-4586-01 19 51021727 51021727 C T LRRC4B Missense_Mutation p.V415I 0.21 tolerated(0.07) possibly_damaging(0.859) TCGA-33-4586-01 19 52468196 52468196 C A ZNF350 Missense_Mutation p.A504S 0.22 tolerated(0.23) benign(0.016) TCGA-33-4586-01 19 54403943 54403943 C A PRKCG Missense_Mutation p.N505K 0.24 deleterious(0.02) probably_damaging(0.931) TCGA-33-4586-01 19 54744980 54744980 G T LILRA6 Missense_Mutation p.L228M 0.24 deleterious(0.02) probably_damaging(0.996) TCGA-33-4586-01 19 54969376 54969376 G A LENG8 Missense_Mutation p.R666Q 0.45 deleterious(0) probably_damaging(0.993) TCGA-33-4586-01 19 55295349 55295349 C A KIR2DL1 3'UTR 0.88 TCGA-33-4586-01 19 58050032 58050032 G T ZNF549 Nonsense_Mutation p.E554* 0.25 TCGA-33-4586-01 19 8491529 8491529 G T MARCH2 Silent p.A71A 0.16 TCGA-33-4586-01 19 8993514 8993514 C A MUC16 Missense_Mutation p.D13859Y 0.24 probably_damaging(1) TCGA-33-4586-01 19 9020773 9020773 G A MUC16 Silent p.T12443T 0.40 TCGA-33-4586-01 19 9058508 9058508 G C MUC16 Silent p.T9646T 0.16 TCGA-33-4586-01 19 9085067 9085067 C G MUC16 Missense_Mutation p.V2250L 0.15 unknown(0) TCGA-33-4586-01 1 103364528 103364528 G T COL11A1 Missense_Mutation p.A1370E 0.35 unknown(0) TCGA-33-4586-01 1 109380322 109380322 C A AKNAD1 Silent p.V462V 0.42 TCGA-33-4586-01 1 145522773 145522773 G C PEX11B Missense_Mutation p.V212L 0.24 tolerated(0.42) benign(0.01) TCGA-33-4586-01 1 148004764 148004764 T C NBPF14 Silent p.E856E 0.50 TCGA-33-4586-01 1 152284056 152284056 G A FLG Silent p.S1102S 0.41 TCGA-33-4586-01 1 154090312 154090312 T A NUP210L Missense_Mutation p.E503D 0.26 tolerated(0.27) benign(0.016) TCGA-33-4586-01 1 154295502 154295502 G T AQP10 Nonsense_Mutation p.G93* 0.42 TCGA-33-4586-01 1 154999173 154999173 A T DCST2 Missense_Mutation p.L454Q 0.41 deleterious(0) benign(0.236) TCGA-33-4586-01 1 158450135 158450135 G A OR10R2 Missense_Mutation p.M156I 0.03 deleterious(0.02) benign(0.047) TCGA-33-4586-01 1 159785346 159785346 G A FCRL6 Silent p.A400A 0.44 TCGA-33-4586-01 1 160093036 160093036 G T ATP1A2 Missense_Mutation p.A71S 0.47 tolerated(0.46) benign(0.151) TCGA-33-4586-01 1 162344289 162344289 T G C1orf111 Missense_Mutation p.E112A 0.45 deleterious(0.01) possibly_damaging(0.886) TCGA-33-4586-01 1 169511813 169511813 G T F5 Missense_Mutation p.P839T 0.40 tolerated(0.13) benign(0.108) TCGA-33-4586-01 1 175066602 175066602 C A TNN Silent p.T546T 0.22 TCGA-33-4586-01 1 175348687 175348687 C A TNR Splice_Site p.X655_splice 0.45 TCGA-33-4586-01 1 176640161 176640161 T A PAPPA2 Missense_Mutation p.F683I 0.40 tolerated(0.06) probably_damaging(0.997) TCGA-33-4586-01 1 176927505 176927505 A T ASTN1 Missense_Mutation p.V571E 0.43 deleterious(0.01) possibly_damaging(0.729) TCGA-33-4586-01 1 177001749 177001749 T G ASTN1 Silent p.T236T 0.23 TCGA-33-4586-01 1 177225213 177225213 G T BRINP2 Missense_Mutation p.G143V 0.46 deleterious(0) probably_damaging(0.98) TCGA-33-4586-01 1 182615850 182615850 C A RGS8 3'UTR 0.25 TCGA-33-4586-01 1 196434448 196434448 T C KCNT2 Missense_Mutation p.T205A 0.22 deleterious(0) possibly_damaging(0.669) TCGA-33-4586-01 1 197403908 197403908 A G CRB1 Missense_Mutation p.E972G 0.35 tolerated(0.19) possibly_damaging(0.848) TCGA-33-4586-01 1 197898178 197898178 G T LHX9 Missense_Mutation p.R328L 0.48 deleterious(0) probably_damaging(0.937) TCGA-33-4586-01 1 20474835 20474835 C G PLA2G2F Missense_Mutation p.P193A 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.851) TCGA-33-4586-01 1 216465515 216465515 A T USH2A Splice_Site p.X614_splice 0.22 TCGA-33-4586-01 1 216850647 216850647 C A ESRRG Silent p.S86S 0.39 TCGA-33-4586-01 1 228492083 228492084 - A OBSCN Frame_Shift_Ins p.S4695Kfs*13 0.32 TCGA-33-4586-01 1 229441110 229441110 A C RAB4A 3'UTR 0.42 TCGA-33-4586-01 1 234563324 234563324 T C TARBP1 Silent p.Q1083Q 0.19 TCGA-33-4586-01 1 237617780 237617780 G T RYR2 Missense_Mutation p.G461V 0.24 benign(0.037) TCGA-33-4586-01 1 237632428 237632428 A C RYR2 Missense_Mutation p.Q550P 0.27 possibly_damaging(0.756) TCGA-33-4586-01 1 237753131 237753131 G T RYR2 Missense_Mutation p.G1213C 0.18 probably_damaging(0.993) TCGA-33-4586-01 1 240071955 240071955 G T CHRM3 Nonsense_Mutation p.E402* 0.33 TCGA-33-4586-01 1 240256749 240256749 C A FMN2 Missense_Mutation p.P447Q 0.39 unknown(0) TCGA-33-4586-01 1 241099906 241099906 C G RGS7 Silent p.R109R 0.14 TCGA-33-4586-01 1 247582221 247582221 C A NLRP3 Missense_Mutation p.P42Q 0.50 deleterious(0) probably_damaging(1) TCGA-33-4586-01 1 247655125 247655125 C A OR2W5 RNA 0.39 TCGA-33-4586-01 1 247875325 247875325 G T OR6F1 Missense_Mutation p.L245I 0.45 tolerated(0.07) benign(0.434) TCGA-33-4586-01 1 247902377 247902377 G T OR14K1 Missense_Mutation p.G154V 0.24 deleterious(0) probably_damaging(0.982) TCGA-33-4586-01 1 248129572 248129572 G T OR2AK2 Silent p.T313T 0.36 TCGA-33-4586-01 1 248202388 248202388 G T OR2L2 Silent p.L273L 0.45 TCGA-33-4586-01 1 248525408 248525408 C A OR2T4 Missense_Mutation p.L176M 0.21 tolerated(0.65) probably_damaging(0.939) TCGA-33-4586-01 1 248525824 248525824 T A OR2T4 Silent p.T314T 0.25 TCGA-33-4586-01 1 248737519 248737519 C A OR2T34 Silent p.L180L 0.15 TCGA-33-4586-01 1 32201435 32201435 A G BAI2 Missense_Mutation p.I1087T 0.50 deleterious(0) probably_damaging(0.953) TCGA-33-4586-01 1 45501739 45501739 C T ZSWIM5 Silent p.L709L 0.41 TCGA-33-4586-01 1 66102055 66102055 C G LEPR Missense_Mutation p.S952C 0.42 deleterious(0) probably_damaging(0.986) TCGA-33-4586-01 1 70339299 70339299 C A LRRC7 Intron 0.30 TCGA-33-4586-01 1 76198744 76198744 G T ACADM Intron 0.46 TCGA-33-4586-01 1 85510898 85510898 G T MCOLN3 Missense_Mutation p.P49H 0.37 deleterious(0) probably_damaging(1) TCGA-33-4586-01 20 17594839 17594839 G A RRBP1 Silent p.G974G 0.22 TCGA-33-4586-01 20 34203979 34203979 C A SPAG4 Silent p.P18P 0.41 TCGA-33-4586-01 20 35242818 35242818 G T SLA2 Nonsense_Mutation p.C185* 0.41 TCGA-33-4586-01 20 4705465 4705465 C G PRND Missense_Mutation p.H90D 0.55 deleterious_low_confidence(0.01) benign(0.034) TCGA-33-4586-01 20 61513191 61513191 C A DIDO1 Missense_Mutation p.D1373Y 0.49 possibly_damaging(0.906) TCGA-33-4586-01 21 28338313 28338313 C T ADAMTS5 Missense_Mutation p.R133Q 0.23 deleterious(0.01) probably_damaging(0.993) TCGA-33-4586-01 21 31692350 31692350 A C KRTAP26-1 Missense_Mutation p.S2A 0.30 tolerated(0.18) benign(0.172) TCGA-33-4586-01 21 37618123 37618123 T G DOPEY2 Missense_Mutation p.L1282R 0.55 deleterious(0) probably_damaging(0.999) TCGA-33-4586-01 21 38862669 38862669 G A DYRK1A Missense_Mutation p.C286Y 0.49 deleterious(0) probably_damaging(1) TCGA-33-4586-01 21 43161625 43161625 G T RIPK4 Nonsense_Mutation p.Y576* 0.43 TCGA-33-4586-01 22 23165557 23165557 G T IGLV2-8 Missense_Mutation p.G43V 0.31 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-33-4586-01 22 36124888 36124888 A T APOL5 Silent p.P415P 0.27 TCGA-33-4586-01 22 37769709 37769709 C A ELFN2 Silent p.A622A 0.33 TCGA-33-4586-01 22 39262445 39262445 G A CBX6 Silent p.A336A 0.38 TCGA-33-4586-01 2 103142801 103142801 C A SLC9A4 Missense_Mutation p.F678L 0.08 tolerated(0.65) benign(0.002) TCGA-33-4586-01 2 11767094 11767094 G A GREB1 Missense_Mutation p.G1438E 0.28 tolerated(0.14) benign(0.008) TCGA-33-4586-01 2 11927241 11927241 G A LPIN1 Missense_Mutation p.D580N 0.30 deleterious(0.05) benign(0.087) TCGA-33-4586-01 2 132020969 132020969 A T POTEE Missense_Mutation p.E647D 0.31 deleterious_low_confidence(0) possibly_damaging(0.585) TCGA-33-4586-01 2 135988481 135988481 T C ZRANB3 Missense_Mutation p.Q519R 0.45 deleterious(0.01) probably_damaging(0.971) TCGA-33-4586-01 2 138169316 138169316 G A THSD7B Missense_Mutation p.E945K 0.14 tolerated(0.05) possibly_damaging(0.486) TCGA-33-4586-01 2 152314451 152314451 G A RIF1 Missense_Mutation p.M943I 0.22 tolerated(0.05) benign(0) TCGA-33-4586-01 2 160294931 160294934 TTGA - BAZ2B Frame_Shift_Del p.N391Kfs*8 0.14 TCGA-33-4586-01 2 161223842 161223842 T C RBMS1 Missense_Mutation p.N46D 0.38 deleterious(0.05) benign(0.197) TCGA-33-4586-01 2 163695033 163695033 G T KCNH7 5'UTR 0.41 TCGA-33-4586-01 2 166183402 166183402 G T SCN2A Missense_Mutation p.S686I 0.13 tolerated(0.08) probably_damaging(0.983) TCGA-33-4586-01 2 170011089 170011089 G A LRP2 Missense_Mutation p.P4059L 0.45 possibly_damaging(0.616) TCGA-33-4586-01 2 170022552 170022552 C T LRP2 Missense_Mutation p.C3883Y 0.44 probably_damaging(1) TCGA-33-4586-01 2 171509592 171509592 T C MYO3B Silent p.F1329F 0.09 TCGA-33-4586-01 2 178098960 178098960 C A NFE2L2 Missense_Mutation p.D29Y 0.32 deleterious(0) probably_damaging(1) TCGA-33-4586-01 2 179402140 179402140 G T TTN Missense_Mutation p.A33265D 0.35 TCGA-33-4586-01 2 179614327 179614327 C A TTN Intron 0.18 TCGA-33-4586-01 2 179644883 179644883 T C TTN Silent p.T1191T 0.16 TCGA-33-4586-01 2 179720202 179720202 C A CCDC141 Missense_Mutation p.D978Y 0.35 deleterious(0.01) benign(0.142) TCGA-33-4586-01 2 180815461 180815461 T C CWC22 Splice_Site p.X640_splice 0.17 TCGA-33-4586-01 2 196851843 196851843 A G DNAH7 Silent p.I567I 0.41 TCGA-33-4586-01 2 198950673 198950673 A T PLCL1 Missense_Mutation p.Q811L 0.45 deleterious(0.03) possibly_damaging(0.651) TCGA-33-4586-01 2 200137396 200137396 C A SATB2 Splice_Site p.X581_splice 0.38 TCGA-33-4586-01 2 215440652 215440652 G A VWC2L 3'UTR 0.21 TCGA-33-4586-01 2 216272842 216272842 G T FN1 Missense_Mutation p.A836D 0.11 deleterious(0.03) probably_damaging(1) TCGA-33-4586-01 2 216293051 216293051 G A FN1 Silent p.N232N 0.47 TCGA-33-4586-01 2 220437219 220437219 G T INHA Missense_Mutation p.L41F 0.17 deleterious(0) probably_damaging(1) TCGA-33-4586-01 2 225266253 225266253 C T FAM124B Missense_Mutation p.G78E 0.40 deleterious(0) probably_damaging(1) TCGA-33-4586-01 2 225346711 225346711 C - CUL3 Frame_Shift_Del p.V643Ffs*11 0.15 TCGA-33-4586-01 2 227895295 227895295 G T COL4A4 Silent p.G1279G 0.10 TCGA-33-4586-01 2 234581152 234581152 C T UGT1A9 Missense_Mutation p.P191L 0.12 deleterious(0) probably_damaging(0.999) TCGA-33-4586-01 2 27169891 27169891 A G DPYSL5 3'UTR 0.46 TCGA-33-4586-01 2 27355472 27355472 T G PREB Silent p.R251R 0.13 TCGA-33-4586-01 2 27530406 27530406 C A UCN Missense_Mutation p.D120Y 0.21 deleterious(0) probably_damaging(0.957) TCGA-33-4586-01 2 37121150 37121150 G C STRN Missense_Mutation p.D274E 0.17 tolerated(0.27) benign(0.005) TCGA-33-4586-01 2 45169617 45169617 T C SIX3 Missense_Mutation p.I125T 0.35 deleterious(0.01) benign(0.028) TCGA-33-4586-01 2 48873622 48873622 T C STON1-GTF2A1L Missense_Mutation p.M844T 0.22 deleterious(0) benign(0.186) TCGA-33-4586-01 2 63631375 63631375 G A WDPCP Silent p.L415L 0.15 TCGA-33-4586-01 2 75276594 75276594 C A TACR1 Nonsense_Mutation p.E397* 0.10 TCGA-33-4586-01 2 79385494 79385494 G C REG3A Missense_Mutation p.N97K 0.17 tolerated(0.09) possibly_damaging(0.709) TCGA-33-4586-01 2 79385570 79385570 G T REG3A Missense_Mutation p.P72H 0.15 tolerated(0.14) benign(0.232) TCGA-33-4586-01 2 89266205 89266205 G A IGKV1-6 Missense_Mutation p.P18L 0.17 deleterious(0.03) benign(0.157) TCGA-33-4586-01 2 90060930 90060930 A G IGKV6D-21 Missense_Mutation p.T93A 0.22 deleterious(0.01) possibly_damaging(0.773) TCGA-33-4586-01 2 95815218 95815218 G A ZNF514 Missense_Mutation p.H338Y 0.37 deleterious(0) probably_damaging(0.96) TCGA-33-4586-01 2 96961333 96961333 C T SNRNP200 Missense_Mutation p.E579K 0.40 deleterious(0.01) benign(0.403) TCGA-33-4586-01 2 98351892 98351892 C A ZAP70 Missense_Mutation p.P421Q 0.32 deleterious(0) probably_damaging(0.974) TCGA-33-4586-01 3 10342823 10342823 T C SEC13 3'UTR 0.35 TCGA-33-4586-01 3 108391468 108391468 C A DZIP3 Missense_Mutation p.L852M 0.22 deleterious(0.01) possibly_damaging(0.461) TCGA-33-4586-01 3 108474592 108474592 G T RETNLB 3'UTR 0.41 TCGA-33-4586-01 3 111319669 111319669 C G CD96 Nonsense_Mutation p.S348* 0.14 TCGA-33-4586-01 3 122632465 122632465 G T SEMA5B Missense_Mutation p.S786R 0.21 deleterious(0.04) benign(0.224) TCGA-33-4586-01 3 123452795 123452795 C G MYLK Missense_Mutation p.A350P 0.21 tolerated(0.14) probably_damaging(0.995) TCGA-33-4586-01 3 124802650 124802650 T C SLC12A8 3'UTR 0.35 TCGA-33-4586-01 3 133692604 133692604 C A SLCO2A1 Silent p.L100L 0.15 TCGA-33-4586-01 3 13401854 13401854 G A NUP210 Silent p.I690I 0.23 TCGA-33-4586-01 3 138724736 138724736 G T PRR23A Missense_Mutation p.D125E 0.28 deleterious(0.04) possibly_damaging(0.523) TCGA-33-4586-01 3 140401468 140401468 G A TRIM42 Missense_Mutation p.C169Y 0.18 tolerated(0.09) probably_damaging(0.999) TCGA-33-4586-01 3 142188344 142188344 A T ATR Missense_Mutation p.H2129Q 0.45 tolerated(0.08) probably_damaging(0.972) TCGA-33-4586-01 3 148562331 148562331 C A CPB1 Missense_Mutation p.L215M 0.24 tolerated(0.61) probably_damaging(0.983) TCGA-33-4586-01 3 154145305 154145305 T - GPR149 Frame_Shift_Del p.I392Sfs*21 0.35 TCGA-33-4586-01 3 161220152 161220152 C A OTOL1 Missense_Mutation p.A171E 0.45 tolerated(1) unknown(0) TCGA-33-4586-01 3 164712177 164712177 G T SI Missense_Mutation p.S1570Y 0.42 tolerated(0.09) probably_damaging(0.991) TCGA-33-4586-01 3 167016230 167016230 G T ZBBX Missense_Mutation p.A581D 0.15 deleterious(0) probably_damaging(0.964) TCGA-33-4586-01 3 169482446 169482446 G T ACTRT3 3'Flank 0.18 TCGA-33-4586-01 3 169485281 169485281 C T ACTRT3 Nonsense_Mutation p.W353* 0.05 TCGA-33-4586-01 3 171965446 171965446 C T FNDC3B Missense_Mutation p.H130Y 0.58 tolerated(1) possibly_damaging(0.701) TCGA-33-4586-01 3 179096548 179096548 G A MFN1 Silent p.L536L 0.06 TCGA-33-4586-01 3 186370293 186370293 T A FETUB Missense_Mutation p.I341N 0.15 deleterious(0) possibly_damaging(0.568) TCGA-33-4586-01 3 186383826 186383826 G T HRG Missense_Mutation p.K2N 0.12 deleterious(0.04) benign(0.403) TCGA-33-4586-01 3 190995924 190995924 G T UTS2B Missense_Mutation p.R47S 0.13 tolerated(0.24) benign(0.001) TCGA-33-4586-01 3 195453110 195453110 G A MUC20 Missense_Mutation p.V546I 0.11 tolerated(0.09) unknown(0) TCGA-33-4586-01 3 38962654 38962654 G - SCN11A Frame_Shift_Del p.L269Wfs*2 0.37 TCGA-33-4586-01 3 46010092 46010092 C A FYCO1 Missense_Mutation p.R245L 0.41 deleterious(0.02) probably_damaging(0.996) TCGA-33-4586-01 3 62357341 62357341 A T FEZF2 Missense_Mutation p.V285E 0.27 deleterious(0.01) benign(0.012) TCGA-33-4586-01 3 62522216 62522216 G C CADPS Missense_Mutation p.I669M 0.39 deleterious(0.02) benign(0.308) TCGA-33-4586-01 3 88189750 88189750 C T ZNF654 Silent p.V430V 0.08 TCGA-33-4586-01 3 88189791 88189791 C G ZNF654 Nonsense_Mutation p.S444* 0.08 TCGA-33-4586-01 3 88189815 88189815 C G ZNF654 Missense_Mutation p.T452R 0.09 deleterious(0.01) benign(0.042) TCGA-33-4586-01 3 93803157 93803157 T A NSUN3 Missense_Mutation p.L110Q 0.14 deleterious(0) probably_damaging(0.995) TCGA-33-4586-01 3 93803158 93803158 G A NSUN3 Silent p.L110L 0.14 TCGA-33-4586-01 3 97887807 97887807 G T OR5H15 Missense_Mutation p.K88N 0.22 tolerated(0.05) benign(0.021) TCGA-33-4586-01 4 103790340 103790340 C G CISD2 Silent p.L33L 0.45 TCGA-33-4586-01 4 121738064 121738064 T A PRDM5 Silent p.T222T 0.44 TCGA-33-4586-01 4 123268745 123268745 A G KIAA1109 Missense_Mutation p.K4314E 0.09 benign(0.362) TCGA-33-4586-01 4 123374898 123374898 G T IL2 Silent p.I106I 0.32 TCGA-33-4586-01 4 134076121 134076121 G C PCDH10 Missense_Mutation p.G914R 0.38 tolerated(0.38) probably_damaging(1) TCGA-33-4586-01 4 149356359 149356359 G C NR3C2 Missense_Mutation p.P552A 0.08 deleterious(0.05) possibly_damaging(0.811) TCGA-33-4586-01 4 151000125 151000125 C A DCLK2 5'Flank 0.56 TCGA-33-4586-01 4 155670218 155670218 G T LRAT Missense_Mutation p.C208F 0.40 tolerated(0.36) benign(0.008) TCGA-33-4586-01 4 174090001 174090001 T A GALNT7 Silent p.I5I 0.30 TCGA-33-4586-01 4 20541128 20541128 C T SLIT2 Missense_Mutation p.R633C 0.20 deleterious(0) probably_damaging(0.999) TCGA-33-4586-01 4 21305467 21305467 T G KCNIP4 Intron 0.44 TCGA-33-4586-01 4 265365 265365 A G ZNF732 Silent p.F427F 0.43 TCGA-33-4586-01 4 46099312 46099312 C A GABRG1 Missense_Mutation p.W53C 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-33-4586-01 4 517400 517400 G T PIGG Silent p.L589L 0.49 TCGA-33-4586-01 4 55141131 55141131 C A PDGFRA Missense_Mutation p.L593I 0.45 deleterious(0) probably_damaging(0.999) TCGA-33-4586-01 4 56820422 56820422 T A CEP135 Silent p.A115A 0.41 TCGA-33-4586-01 4 72611885 72611885 C G GC 3'UTR 0.34 TCGA-33-4586-01 4 77660963 77660963 C T SHROOM3 Missense_Mutation p.P546L 0.34 tolerated(0.2) benign(0.01) TCGA-33-4586-01 4 96166286 96166286 C A UNC5C Missense_Mutation p.G262V 0.44 deleterious(0) probably_damaging(1) TCGA-33-4586-01 5 101724397 101724397 C G SLCO6A1 Missense_Mutation p.G671A 0.32 tolerated(0.06) possibly_damaging(0.83) TCGA-33-4586-01 5 118970249 118970249 G T FAM170A Missense_Mutation p.G269V 0.47 deleterious(0) possibly_damaging(0.891) TCGA-33-4586-01 5 121759012 121759012 A G SNCAIP Missense_Mutation p.T194A 0.19 tolerated(0.98) benign(0.001) TCGA-33-4586-01 5 137206399 137206399 G T MYOT Missense_Mutation p.R20I 0.39 tolerated(0.09) benign(0.193) TCGA-33-4586-01 5 13759076 13759076 T A DNAH5 Missense_Mutation p.Q3433L 0.13 benign(0.227) TCGA-33-4586-01 5 140783125 140783125 G T PCDHGA9 Missense_Mutation p.R202S 0.44 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-33-4586-01 5 141005610 141005610 C A HDAC3 Nonsense_Mutation p.E317* 0.09 TCGA-33-4586-01 5 147902862 147902862 G T HTR4 Missense_Mutation p.T134N 0.38 deleterious(0.03) possibly_damaging(0.893) TCGA-33-4586-01 5 156607999 156607999 T C ITK Missense_Mutation p.F4S 0.40 tolerated(0.67) benign(0) TCGA-33-4586-01 5 26881271 26881271 C G CDH9 Missense_Mutation p.G782R 0.16 deleterious(0) possibly_damaging(0.897) TCGA-33-4586-01 5 33937196 33937196 C A RXFP3 Silent p.I117I 0.14 TCGA-33-4586-01 5 36035776 36035777 - C UGT3A2 3'UTR 0.14 TCGA-33-4586-01 5 38407059 38407059 A C EGFLAM Missense_Mutation p.T320P 0.06 tolerated(0.15) benign(0.003) TCGA-33-4586-01 5 43040196 43040196 T C ANXA2R 5'UTR 0.47 TCGA-33-4586-01 5 43139363 43139363 C T ZNF131 Missense_Mutation p.A108V 0.16 deleterious(0.03) probably_damaging(0.997) TCGA-33-4586-01 5 45262584 45262584 G T HCN1 Nonsense_Mutation p.C704* 0.26 TCGA-33-4586-01 5 56168787 56168787 G T MAP3K1 Missense_Mutation p.Q547H 0.39 deleterious(0) benign(0.428) TCGA-33-4586-01 5 75991391 75991393 AGA - IQGAP2 In_Frame_Del p.K1371del 0.13 TCGA-33-4586-01 6 112508764 112508764 C T LAMA4 Missense_Mutation p.R285Q 0.19 tolerated(0.21) benign(0.206) TCGA-33-4586-01 6 117237460 117237460 G T RFX6 Missense_Mutation p.D319Y 0.34 deleterious(0) probably_damaging(1) TCGA-33-4586-01 6 117710802 117710802 G A ROS1 Silent p.I490I 0.08 TCGA-33-4586-01 6 119669750 119669750 G T MAN1A1 Missense_Mutation p.Q161K 0.29 tolerated(0.61) benign(0.002) TCGA-33-4586-01 6 128176332 128176332 G C THEMIS Silent p.G31G 0.38 TCGA-33-4586-01 6 129777610 129777610 T C LAMA2 Missense_Mutation p.F2280L 0.37 deleterious(0) probably_damaging(0.999) TCGA-33-4586-01 6 132859838 132859838 C T TAAR9 Missense_Mutation p.P137L 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-33-4586-01 6 138655785 138655785 C T KIAA1244 Silent p.G1934G 0.08 TCGA-33-4586-01 6 147124638 147124638 G T ADGB Intron 0.14 TCGA-33-4586-01 6 155504519 155504519 A C TIAM2 Silent p.T983T 0.34 TCGA-33-4586-01 6 165715433 165715433 G T C6orf118 Silent p.T126T 0.12 TCGA-33-4586-01 6 169641892 169641892 G A THBS2 Missense_Mutation p.L286F 0.27 tolerated(0.06) benign(0.089) TCGA-33-4586-01 6 25669792 25669792 C A SCGN Silent p.L130L 0.18 TCGA-33-4586-01 6 25778227 25778227 G A SLC17A4 Missense_Mutation p.G448R 0.17 deleterious(0) probably_damaging(1) TCGA-33-4586-01 6 25778228 25778228 G T SLC17A4 Missense_Mutation p.G448V 0.17 deleterious(0) probably_damaging(1) TCGA-33-4586-01 6 25983845 25983845 C G TRIM38 Missense_Mutation p.S443C 0.34 deleterious(0.04) probably_damaging(0.992) TCGA-33-4586-01 6 26093020 26093020 G T HFE Missense_Mutation p.D242Y 0.29 deleterious(0.01) probably_damaging(1) TCGA-33-4586-01 6 28542454 28542454 C A SCAND3 Silent p.G676G 0.31 TCGA-33-4586-01 6 29640952 29640952 C T ZFP57 Silent p.Q312Q 0.13 TCGA-33-4586-01 6 29976419 29976419 T G ZNRD1-AS1 RNA 0.12 TCGA-33-4586-01 6 30309598 30309598 A T TRIM39 Silent p.P373P 0.36 TCGA-33-4586-01 6 32975108 32975108 G T HLA-DOA Missense_Mutation p.A198E 0.36 tolerated(1) benign(0.003) TCGA-33-4586-01 6 33135240 33135240 G T COL11A2 Missense_Mutation p.P1276H 0.22 unknown(0) TCGA-33-4586-01 6 38818172 38818172 G A DNAH8 Missense_Mutation p.C1565Y 0.14 probably_damaging(1) TCGA-33-4586-01 6 39267142 39267142 G C KCNK17 3'UTR 0.38 TCGA-33-4586-01 6 43400087 43400087 A G ABCC10 Silent p.A123A 0.19 TCGA-33-4586-01 6 49403260 49403260 T C MUT Missense_Mutation p.H678R 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-33-4586-01 6 49806193 49806193 G A CRISP1 Silent p.V193V 0.35 TCGA-33-4586-01 6 52701091 52701091 A G GSTA5 Missense_Mutation p.L72P 0.39 deleterious(0.01) probably_damaging(0.997) TCGA-33-4586-01 6 55216328 55216328 A G GFRAL Silent p.P216P 0.14 TCGA-33-4586-01 6 56470057 56470057 T C DST Intron 0.15 TCGA-33-4586-01 6 76712684 76712684 A G IMPG1 Silent p.P414P 0.22 TCGA-33-4586-01 6 96651583 96651583 C AAA FUT9 Frame_Shift_Ins p.S184Rfs*11 0.12 TCGA-33-4586-01 7 100682917 100682917 C T MUC17 Silent p.S2740S 0.26 TCGA-33-4586-01 7 1195151 1195151 C G ZFAND2A Missense_Mutation p.V74L 0.34 tolerated(0.19) benign(0.004) TCGA-33-4586-01 7 127231092 127231092 G T ARF5 Missense_Mutation p.V136L 0.21 deleterious_low_confidence(0.04) benign(0.003) TCGA-33-4586-01 7 142144060 142144060 C T TRBV6-7 Missense_Mutation p.V9M 0.14 deleterious(0.02) possibly_damaging(0.787) TCGA-33-4586-01 7 142481246 142481246 A C PRSS3P2 RNA 0.35 TCGA-33-4586-01 7 143053859 143053859 C A FAM131B Silent p.P289P 0.53 TCGA-33-4586-01 7 144098589 144098589 G T NOBOX Missense_Mutation p.P132T 0.17 tolerated(0.05) possibly_damaging(0.758) TCGA-33-4586-01 7 146818117 146818117 A G CNTNAP2 Silent p.T267T 0.49 TCGA-33-4586-01 7 147844663 147844663 G A CNTNAP2 Missense_Mutation p.D879N 0.47 deleterious(0.02) probably_damaging(0.957) TCGA-33-4586-01 7 150417936 150417936 C T GIMAP1 Silent p.L282L 0.16 TCGA-33-4586-01 7 150499388 150499388 G T TMEM176A Missense_Mutation p.G87V 0.46 deleterious(0.03) possibly_damaging(0.888) TCGA-33-4586-01 7 158325457 158325457 T C PTPRN2 Intron 0.24 TCGA-33-4586-01 7 30706895 30706895 C G CRHR2 Silent p.T115T 0.30 TCGA-33-4586-01 7 31618018 31618018 C A CCDC129 Silent p.G406G 0.25 TCGA-33-4586-01 7 31682532 31682532 G T CCDC129 Missense_Mutation p.E542D 0.04 deleterious(0.02) probably_damaging(0.963) TCGA-33-4586-01 7 31683037 31683037 G A CCDC129 Missense_Mutation p.G711S 0.34 tolerated(0.09) possibly_damaging(0.548) TCGA-33-4586-01 7 32909082 32909082 C A KBTBD2 Missense_Mutation p.V583L 0.19 deleterious(0.03) benign(0.032) TCGA-33-4586-01 7 35009140 35009140 T C DPY19L1 Missense_Mutation p.T234A 0.52 tolerated(0.44) benign(0.005) TCGA-33-4586-01 7 44104495 44104495 G A PGAM2 Silent p.A177A 0.31 TCGA-33-4586-01 7 45004657 45004657 G A MYO1G Missense_Mutation p.P805S 0.23 tolerated(0.07) probably_damaging(0.998) TCGA-33-4586-01 7 45113071 45113071 A G CCM2 Silent p.E293E 0.12 TCGA-33-4586-01 7 4815277 4815277 G T AP5Z1 5'UTR 0.39 TCGA-33-4586-01 7 50467916 50467916 C A IKZF1 Nonsense_Mutation p.S342* 0.55 TCGA-33-4586-01 7 66703398 66703398 A G TYW1 Missense_Mutation p.K694R 0.24 tolerated(0.52) benign(0.001) TCGA-33-4586-01 7 82996847 82996848 - T SEMA3E 3'UTR 0.11 TCGA-33-4586-01 7 86394893 86394893 G T GRM3 Silent p.G144G 0.11 TCGA-33-4586-01 7 87069537 87069537 T A ABCB4 Missense_Mutation p.E513V 0.28 deleterious(0) benign(0.094) TCGA-33-4586-01 7 92120632 92120632 C - PEX1 Frame_Shift_Del p.G1131Efs*16 0.23 TCGA-33-4586-01 8 104330981 104330981 G T FZD6 Missense_Mutation p.G114V 0.04 deleterious(0) probably_damaging(0.937) TCGA-33-4586-01 8 110457003 110457003 G T PKHD1L1 Missense_Mutation p.L1635F 0.35 deleterious(0.01) possibly_damaging(0.685) TCGA-33-4586-01 8 118533154 118533154 C T MED30 Silent p.P13P 0.39 TCGA-33-4586-01 8 128429034 128429034 C A POU5F1B Missense_Mutation p.P308Q 0.43 deleterious(0.02) possibly_damaging(0.888) TCGA-33-4586-01 8 12879025 12879025 T C KIAA1456 Silent p.S279S 0.36 TCGA-33-4586-01 8 133142111 133142111 C A KCNQ3 Nonsense_Mutation p.E673* 0.28 TCGA-33-4586-01 8 139189639 139189639 A T FAM135B Missense_Mutation p.F352I 0.27 deleterious(0) probably_damaging(0.934) TCGA-33-4586-01 8 139674290 139674290 C A COL22A1 Missense_Mutation p.G1075C 0.26 unknown(0) TCGA-33-4586-01 8 144945978 144945978 A G EPPK1 Missense_Mutation p.F482L 0.25 benign(0.009) TCGA-33-4586-01 8 23709836 23709836 C A STC1 Silent p.L60L 0.43 TCGA-33-4586-01 8 24342837 24342837 G C ADAM7 Missense_Mutation p.G308A 0.34 tolerated(0.12) possibly_damaging(0.585) TCGA-33-4586-01 8 30705226 30705226 G A TEX15 Silent p.N436N 0.31 TCGA-33-4586-01 8 31024623 31024623 A G WRN Silent p.K1356K 0.39 TCGA-33-4586-01 8 36698064 36698064 T C KCNU1 Silent p.F534F 0.38 TCGA-33-4586-01 8 39606831 39606833 CAG AA ADAM2 Frame_Shift_Del p.P671Lfs*15 0.57 TCGA-33-4586-01 8 41834527 41834527 T A KAT6A Silent p.T454T 0.28 TCGA-33-4586-01 8 42977586 42977586 G - POMK Frame_Shift_Del p.D207Tfs*11 0.26 TCGA-33-4586-01 8 53030927 53030927 C T ST18 Missense_Mutation p.E944K 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-33-4586-01 8 77765162 77765162 C G ZFHX4 Missense_Mutation p.T2002R 0.36 possibly_damaging(0.814) TCGA-33-4586-01 8 88885555 88885555 C G DCAF4L2 Silent p.T215T 0.28 TCGA-33-4586-01 8 93017503 93017503 C A RUNX1T1 Missense_Mutation p.R205L 0.33 deleterious(0.01) benign(0.421) TCGA-33-4586-01 9 101787174 101787174 G T COL15A1 Missense_Mutation p.G625W 0.23 deleterious(0) probably_damaging(1) TCGA-33-4586-01 9 106887320 106887321 - A SMC2 Frame_Shift_Ins p.L798Tfs*12 0.11 TCGA-33-4586-01 9 116357881 116357881 G T RGS3 Missense_Mutation p.G1083W 0.54 deleterious(0) probably_damaging(1) TCGA-33-4586-01 9 117051248 117051248 G A COL27A1 Splice_Site p.X1384_splice 0.29 TCGA-33-4586-01 9 117094113 117094113 G T ORM2 Missense_Mutation p.K148N 0.25 deleterious(0.02) benign(0.031) TCGA-33-4586-01 9 117793909 117793909 G T TNC Missense_Mutation p.S1948Y 0.58 deleterious(0.01) probably_damaging(1) TCGA-33-4586-01 9 122004458 122004458 C A BRINP1 Missense_Mutation p.R149L 0.45 deleterious(0) benign(0.028) TCGA-33-4586-01 9 140446840 140446840 G T MRPL41 Missense_Mutation p.D103Y 0.61 deleterious(0) probably_damaging(1) TCGA-33-4586-01 9 20414001 20414001 A C MLLT3 Silent p.P281P 0.52 TCGA-33-4586-01 9 23762131 23762131 T C ELAVL2 Silent p.T34T 0.59 TCGA-33-4586-01 9 23762132 23762132 G T ELAVL2 Missense_Mutation p.T34K 0.59 tolerated(0.53) benign(0.017) TCGA-33-4586-01 9 745225 745225 C T KANK1 Missense_Mutation p.S1350L 0.63 tolerated(0.5) benign(0.04) TCGA-33-4586-01 9 8527344 8527344 C A PTPRD Splice_Site p.X184_splice 0.09 TCGA-33-4586-01 9 90502802 90502802 C A SPATA31E1 Missense_Mutation p.H1134N 0.23 tolerated(0.81) possibly_damaging(0.828) TCGA-33-4586-01 X 101139358 101139358 G T ZMAT1 Silent p.P347P 0.56 TCGA-33-4586-01 X 109695278 109695278 C T RGAG1 Missense_Mutation p.T478I 0.59 tolerated(0.13) benign(0.039) TCGA-33-4586-01 X 125685379 125685379 C A DCAF12L1 Missense_Mutation p.A405S 0.40 tolerated(0.15) benign(0.003) TCGA-33-4586-01 X 130678730 130678730 G A OR13H1 Missense_Mutation p.R228H 0.59 tolerated(0.4) benign(0.013) TCGA-33-4586-01 X 134994064 134994064 G A SAGE1 Missense_Mutation p.D825N 0.54 tolerated(0.13) probably_damaging(0.91) TCGA-33-4586-01 X 135431138 135431138 G T GPR112 Missense_Mutation p.S1758I 0.53 deleterious(0) benign(0.08) TCGA-33-4586-01 X 142967473 142967473 A T UBE2NL Missense_Mutation p.I91F 0.55 deleterious(0) probably_damaging(0.975) TCGA-33-4586-01 X 14883637 14883637 C A FANCB 5'UTR 0.53 TCGA-33-4586-01 X 150891115 150891115 C T FATE1 Missense_Mutation p.R146W 0.42 tolerated(0.14) benign(0.005) TCGA-33-4586-01 X 1742166 1742166 G T ASMT Silent p.V68V 0.31 TCGA-33-4586-01 X 44970626 44970626 G A KDM6A Splice_Site p.X1393_splice 0.59 TCGA-33-4586-01 X 49355839 49355839 G T GAGE2A Nonsense_Mutation p.E41* 0.12 TCGA-33-4586-01 X 52677351 52677351 T G SSX7 Silent p.P142P 0.57 TCGA-33-4586-01 X 54337675 54337675 T C WNK3 Missense_Mutation p.E196G 0.48 deleterious(0) probably_damaging(0.922) TCGA-33-4586-01 X 601563 601563 T A SHOX Missense_Mutation p.F165Y 0.37 deleterious(0) probably_damaging(0.999) TCGA-33-4586-01 X 62570236 62570236 T A SPIN4 Missense_Mutation p.T155S 0.57 deleterious(0.05) probably_damaging(0.999) TCGA-33-4586-01 X 64959616 64959616 C A MSN Missense_Mutation p.A532D 0.51 deleterious(0.03) probably_damaging(0.978) TCGA-33-4586-01 X 71401534 71401534 T C PIN4 5'UTR 0.69 TCGA-33-4586-01 X 73063443 73063443 T C XIST RNA 0.47 TCGA-33-4586-01 X 86068252 86068252 A C DACH2 Missense_Mutation p.R503S 0.56 deleterious(0) possibly_damaging(0.616) TCGA-33-4586-01 X 96173512 96173512 G T DIAPH2 Missense_Mutation p.D292Y 0.61 deleterious(0) unknown(0) TCGA-33-4587-01 10 15590466 15590466 G T ITGA8 Missense_Mutation p.H956Q 0.40 tolerated(0.54) benign(0.001) TCGA-33-4587-01 10 17275626 17275626 G T VIM Missense_Mutation p.R222L 0.54 deleterious(0) possibly_damaging(0.874) TCGA-33-4587-01 10 32323728 32323729 - C KIF5B Frame_Shift_Ins p.E334Gfs*12 0.28 TCGA-33-4587-01 10 45652289 45652289 C A RP11-445N18.7 RNA 0.35 TCGA-33-4587-01 10 48414135 48414135 G T GDF2 Missense_Mutation p.P245T 0.47 tolerated(0.32) benign(0.114) TCGA-33-4587-01 10 75436522 75436522 T C AGAP5 Silent p.A180A 0.93 TCGA-33-4587-01 10 89692827 89692833 TTTGTGA - PTEN Frame_Shift_Del p.F104* 0.63 TCGA-33-4587-01 10 89692840 89692840 T G PTEN Silent p.L108L 0.65 TCGA-33-4587-01 10 96748911 96748911 A T CYP2C9 3'UTR 0.78 TCGA-33-4587-01 11 106681169 106681169 T C GUCY1A2 Silent p.P414P 0.49 TCGA-33-4587-01 11 1261436 1261436 C A MUC5B Silent p.T1267T 0.33 TCGA-33-4587-01 11 26353696 26353696 A G ANO3 5'UTR 0.44 TCGA-33-4587-01 11 404115 404115 C A PKP3 Missense_Mutation p.F750L 0.26 tolerated(0.6) benign(0.214) TCGA-33-4587-01 11 46894742 46894742 G A LRP4 Missense_Mutation p.R1498W 0.43 deleterious(0) probably_damaging(1) TCGA-33-4587-01 11 47355250 47355250 G A MYBPC3 Silent p.G1016G 0.39 TCGA-33-4587-01 11 49830111 49830111 C A RP11-707M1.1 RNA 0.45 TCGA-33-4587-01 11 51515774 51515774 C T OR4C46 Missense_Mutation p.P165S 0.48 deleterious_low_confidence(0.02) possibly_damaging(0.687) TCGA-33-4587-01 11 55062938 55062938 A - TRIM51HP Intron 0.12 TCGA-33-4587-01 11 55322489 55322489 C T OR4C15 Missense_Mutation p.P236L 0.54 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-33-4587-01 11 55541084 55541084 C A OR5D13 Silent p.L57L 0.42 TCGA-33-4587-01 11 55595431 55595431 C G OR5L2 Missense_Mutation p.T246R 0.30 deleterious(0.01) possibly_damaging(0.882) TCGA-33-4587-01 11 55872916 55872916 C G OR8H2 Missense_Mutation p.T133R 0.26 deleterious(0.05) benign(0.001) TCGA-33-4587-01 11 56058038 56058038 G A OR8H1 Silent p.F167F 0.47 TCGA-33-4587-01 11 64893210 64893210 G C MRPL49 Missense_Mutation p.D123H 0.23 deleterious(0) probably_damaging(0.993) TCGA-33-4587-01 11 65988144 65988144 G C PACS1 Missense_Mutation p.E361Q 0.29 deleterious(0.04) probably_damaging(0.947) TCGA-33-4587-01 11 67187016 67187016 C A CARNS1 Missense_Mutation p.P304Q 0.56 tolerated(0.24) benign(0.026) TCGA-33-4587-01 11 68540830 68540830 G A CPT1A Missense_Mutation p.S548F 0.61 tolerated(0.12) benign(0.355) TCGA-33-4587-01 11 76257130 76257130 C T C11orf30 Missense_Mutation p.P1188L 0.19 deleterious_low_confidence(0.02) probably_damaging(0.927) TCGA-33-4587-01 11 89537365 89537365 T A TRIM49 Missense_Mutation p.Q91H 0.16 tolerated(0.25) benign(0.021) TCGA-33-4587-01 11 94340718 94340718 A G PIWIL4 Silent p.K584K 0.53 TCGA-33-4587-01 12 100042108 100042108 G C FAM71C Missense_Mutation p.Q52H 0.55 deleterious(0) probably_damaging(1) TCGA-33-4587-01 12 101017691 101017691 C A GAS2L3 Missense_Mutation p.R370S 0.44 deleterious(0.02) benign(0.035) TCGA-33-4587-01 12 104064497 104064497 C A STAB2 Missense_Mutation p.N761K 0.50 deleterious(0.01) benign(0.014) TCGA-33-4587-01 12 113543660 113543660 C A RASAL1 Silent p.P564P 0.46 TCGA-33-4587-01 12 113865859 113865859 G T SDSL Missense_Mutation p.W24C 0.43 tolerated(0.11) benign(0.424) TCGA-33-4587-01 12 120750869 120750869 A C SIRT4 3'UTR 0.50 TCGA-33-4587-01 12 123485674 123485674 G A PITPNM2 Silent p.P360P 0.33 TCGA-33-4587-01 12 14849299 14849299 C T GUCY2C Silent p.Q28Q 0.44 TCGA-33-4587-01 12 20774277 20774277 G C PDE3A Missense_Mutation p.R491T 0.29 deleterious(0) benign(0.065) TCGA-33-4587-01 12 26383676 26383676 G C SSPN Silent p.L133L 0.21 TCGA-33-4587-01 12 27540159 27540159 A G ARNTL2 Splice_Site p.X189_splice 0.58 TCGA-33-4587-01 12 5153901 5153901 C - KCNA5 Frame_Shift_Del p.F196Lfs*162 0.25 TCGA-33-4587-01 12 52799988 52799988 G T KRT82 Missense_Mutation p.P25H 0.59 deleterious(0) probably_damaging(0.998) TCGA-33-4587-01 12 54423659 54423659 G C HOXC6 Silent p.S207S 0.10 TCGA-33-4587-01 12 6669913 6669913 C T NOP2 Missense_Mutation p.C496Y 0.21 deleterious(0) probably_damaging(1) TCGA-33-4587-01 12 70731258 70731258 A G CNOT2 Missense_Mutation p.K289E 0.60 tolerated(0.06) benign(0.387) TCGA-33-4587-01 12 70824378 70824378 G T KCNMB4 Missense_Mutation p.C193F 0.47 deleterious(0.03) probably_damaging(0.998) TCGA-33-4587-01 12 7649407 7649407 A C CD163 Splice_Site p.X367_splice 0.39 TCGA-33-4587-01 12 78511892 78511892 A G NAV3 Missense_Mutation p.D952G 0.04 tolerated(0.05) benign(0.007) TCGA-33-4587-01 12 88514872 88514872 T C CEP290 Missense_Mutation p.K421E 0.39 benign(0.003) TCGA-33-4587-01 12 92816414 92816414 T A CLLU1OS Splice_Site p.X18_splice 0.53 TCGA-33-4587-01 12 95602777 95602777 C T FGD6 Silent p.E761E 0.21 TCGA-33-4587-01 13 114312382 114312382 C T ATP4B Silent p.T26T 0.37 TCGA-33-4587-01 13 48951117 48951117 A T RB1 Nonsense_Mutation p.K427* 0.88 TCGA-33-4587-01 13 58208868 58208868 T A PCDH17 Missense_Mutation p.C730S 0.60 tolerated(0.11) benign(0.145) TCGA-33-4587-01 13 77460128 77460128 C G KCTD12 Silent p.V52V 0.33 TCGA-33-4587-01 14 102906840 102906840 G T TECPR2 Missense_Mutation p.K882N 0.25 deleterious(0) benign(0.302) TCGA-33-4587-01 14 105843178 105843178 C T PACS2 Missense_Mutation p.T292I 0.19 deleterious(0.04) possibly_damaging(0.568) TCGA-33-4587-01 14 106667831 106667831 C A IGHV3-20 Missense_Mutation p.G34V 0.24 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-33-4587-01 14 20943189 20943189 G A PNP Intron 0.35 TCGA-33-4587-01 14 23886799 23886799 C G MYH7 Missense_Mutation p.Q1422H 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-33-4587-01 14 39703304 39703304 G C MIA2 5'UTR 0.31 TCGA-33-4587-01 14 45414302 45414302 C T KLHL28 Missense_Mutation p.R277Q 0.18 tolerated(0.11) benign(0.004) TCGA-33-4587-01 14 50266390 50266390 G C NEMF Missense_Mutation p.I793M 0.26 tolerated(0.11) benign(0.013) TCGA-33-4587-01 14 64473846 64473846 C T SYNE2 Missense_Mutation p.P1495S 0.37 probably_damaging(0.923) TCGA-33-4587-01 14 72138391 72138391 G T SIPA1L1 Missense_Mutation p.E937D 0.27 deleterious(0.03) benign(0.007) TCGA-33-4587-01 14 74665721 74665721 G A LIN52 3'UTR 0.33 TCGA-33-4587-01 14 95657931 95657931 G A CLMN Silent p.L993L 0.48 TCGA-33-4587-01 15 29409327 29409327 G A APBA2 Silent p.L747L 0.59 TCGA-33-4587-01 15 42373774 42373774 C A PLA2G4D Missense_Mutation p.C287F 0.55 deleterious(0) probably_damaging(0.985) TCGA-33-4587-01 15 45983184 45983184 G T SQRDL Nonsense_Mutation p.G437* 0.35 TCGA-33-4587-01 15 52192396 52192396 A G TMOD3 Silent p.L260L 0.57 TCGA-33-4587-01 15 55974597 55974597 C T PRTG Missense_Mutation p.R214H 0.26 deleterious(0.05) benign(0.103) TCGA-33-4587-01 15 65054689 65054689 C T RBPMS2 Intron 0.21 TCGA-33-4587-01 15 65108809 65108809 G A PIF1 Silent p.F610F 0.16 TCGA-33-4587-01 15 65960402 65960402 G C DENND4A Nonsense_Mutation p.S1615* 0.30 TCGA-33-4587-01 15 74622551 74622551 G C CCDC33 Missense_Mutation p.A438P 0.18 deleterious(0) probably_damaging(0.991) TCGA-33-4587-01 15 76071776 76071776 G T RP11-24M17.5 RNA 0.29 TCGA-33-4587-01 15 76633482 76633482 A G ISL2 Missense_Mutation p.Q268R 0.40 tolerated(0.09) benign(0.03) TCGA-33-4587-01 15 83932157 83932157 C T BNC1 Missense_Mutation p.E616K 0.25 tolerated(0.12) benign(0.01) TCGA-33-4587-01 16 14989571 14989571 G A NOMO1 3'UTR 0.07 TCGA-33-4587-01 16 20322599 20322599 G T GP2 Missense_Mutation p.F520L 0.27 tolerated(0.23) benign(0.003) TCGA-33-4587-01 16 20386199 20386199 C A PDILT Missense_Mutation p.G209V 0.51 tolerated(0.1) benign(0.34) TCGA-33-4587-01 16 23641503 23641503 C A PALB2 Nonsense_Mutation p.E658* 0.36 TCGA-33-4587-01 16 2578661 2578661 G A AMDHD2 Silent p.T357T 0.38 TCGA-33-4587-01 16 29706004 29706004 G A QPRT Silent p.P11P 0.44 TCGA-33-4587-01 16 31091772 31091772 G - ZNF646 Frame_Shift_Del p.G1377Dfs*34 0.18 TCGA-33-4587-01 16 31477607 31477607 C T ARMC5 Silent p.L735L 0.39 TCGA-33-4587-01 16 3254314 3254314 A G OR1F1 Missense_Mutation p.Q23R 0.82 deleterious(0.03) benign(0.043) TCGA-33-4587-01 16 33965544 33965544 G C RNA5-8SP2 RNA 0.35 TCGA-33-4587-01 16 76556015 76556015 C T CNTNAP4 Silent p.N799N 0.28 TCGA-33-4587-01 16 77327017 77327017 G C ADAMTS18 Missense_Mutation p.P1049A 0.41 tolerated(0.11) benign(0.23) TCGA-33-4587-01 16 87871547 87871547 C A SLC7A5 Missense_Mutation p.R348S 0.27 deleterious(0.01) possibly_damaging(0.458) TCGA-33-4587-01 17 1413093 1413093 C T INPP5K Missense_Mutation p.V88I 0.32 tolerated(0.14) benign(0.128) TCGA-33-4587-01 17 34415880 34415880 C A CCL3 3'UTR 0.53 TCGA-33-4587-01 17 3514196 3514196 G C SHPK Missense_Mutation p.H365Q 0.76 tolerated(0.58) benign(0.028) TCGA-33-4587-01 17 36070664 36070664 G T HNF1B Silent p.R351R 0.12 TCGA-33-4587-01 17 36971281 36971281 C A CWC25 Silent p.L87L 0.30 TCGA-33-4587-01 17 37627253 37627253 C T CDK12 Missense_Mutation p.P390S 0.15 possibly_damaging(0.901) TCGA-33-4587-01 17 37866359 37866359 G T ERBB2 Missense_Mutation p.G222C 0.47 deleterious(0.01) possibly_damaging(0.66) TCGA-33-4587-01 17 39994313 39994313 C G KLHL10 Missense_Mutation p.I43M 0.15 deleterious(0) probably_damaging(0.995) TCGA-33-4587-01 17 48462653 48462653 C A LRRC59 Splice_Site p.X168_splice 0.41 TCGA-33-4587-01 17 48619334 48619334 C T EPN3 Missense_Mutation p.S572F 0.64 deleterious(0) probably_damaging(0.914) TCGA-33-4587-01 17 53471634 53471634 C T MMD 3'UTR 0.19 TCGA-33-4587-01 17 56357220 56357220 C T MPO Missense_Mutation p.R135Q 0.40 tolerated(0.09) benign(0.001) TCGA-33-4587-01 17 7366087 7366087 C G ZBTB4 Silent p.L738L 0.34 TCGA-33-4587-01 17 74035904 74035904 C A SRP68 Missense_Mutation p.L589F 0.41 deleterious(0.03) possibly_damaging(0.86) TCGA-33-4587-01 17 7577557 7577557 A C TP53 Missense_Mutation p.C242G 0.77 deleterious(0) probably_damaging(1) TCGA-33-4587-01 18 117128 117128 A T ROCK1P1 RNA 0.23 TCGA-33-4587-01 18 3879510 3879510 G T DLGAP1 Silent p.R187R 0.47 TCGA-33-4587-01 18 47428997 47428997 C G MYO5B Missense_Mutation p.K926N 0.40 deleterious(0) probably_damaging(0.993) TCGA-33-4587-01 18 56409221 56409221 G C MALT1 Silent p.R576R 0.24 TCGA-33-4587-01 18 56939838 56939838 G A RAX Missense_Mutation p.P100S 0.09 tolerated(0.49) benign(0.004) TCGA-33-4587-01 19 14854427 14854427 C G EMR2 Splice_Site p.X784_splice 0.70 TCGA-33-4587-01 19 19351456 19351456 G T NCAN Missense_Mutation p.V1152L 0.84 deleterious(0.01) probably_damaging(0.997) TCGA-33-4587-01 19 2249377 2249377 C T AMH Silent p.L16L 0.75 TCGA-33-4587-01 19 2733059 2733059 G C SLC39A3 Missense_Mutation p.A212G 0.80 tolerated(0.05) probably_damaging(0.984) TCGA-33-4587-01 19 30303920 30303920 G T CCNE1 Silent p.T52T 0.84 TCGA-33-4587-01 19 36607017 36607017 C G TBCB Missense_Mutation p.F63L 0.38 tolerated(1) benign(0.001) TCGA-33-4587-01 19 40411788 40411788 C T FCGBP Silent p.Q1280Q 0.25 TCGA-33-4587-01 19 44681738 44681738 A G ZNF226 Missense_Mutation p.R775G 0.89 deleterious(0.02) benign(0.075) TCGA-33-4587-01 19 4523605 4523605 C T PLIN5 Missense_Mutation p.E443K 0.32 tolerated_low_confidence(0.28) benign(0.003) TCGA-33-4587-01 19 51227206 51227206 G A CLEC11A Silent p.E64E 0.39 TCGA-33-4587-01 19 52394630 52394630 C G ZNF649 Missense_Mutation p.E253D 0.15 deleterious(0) benign(0.154) TCGA-33-4587-01 19 56090072 56090072 A C ZNF579 Missense_Mutation p.Y312D 0.33 tolerated(0.14) possibly_damaging(0.897) TCGA-33-4587-01 19 57328150 57328150 G A PEG3 Nonsense_Mutation p.Q554* 0.17 TCGA-33-4587-01 19 58005390 58005390 G T ZNF419 Missense_Mutation p.G490W 0.86 deleterious(0) probably_damaging(1) TCGA-33-4587-01 19 9069447 9069447 G C MUC16 Missense_Mutation p.T6000R 0.82 unknown(0) TCGA-33-4587-01 19 9074995 9074995 G T MUC16 Missense_Mutation p.P4151T 0.96 unknown(0) TCGA-33-4587-01 19 9077867 9077867 T A MUC16 Splice_Site p.X3194_splice 0.67 TCGA-33-4587-01 1 104297121 104297121 G A AMY1C Silent p.K293K 0.09 TCGA-33-4587-01 1 13001329 13001329 T G PRAMEF6 Missense_Mutation p.E118D 0.06 deleterious(0.03) possibly_damaging(0.547) TCGA-33-4587-01 1 143767289 143767289 G T PPIAL4G 3'UTR 0.12 TCGA-33-4587-01 1 150131409 150131409 G A PLEKHO1 Silent p.R307R 0.25 TCGA-33-4587-01 1 154233414 154233414 G T UBAP2L Silent p.P875P 0.27 TCGA-33-4587-01 1 158815666 158815666 C T MNDA Missense_Mutation p.S287F 0.08 tolerated(0.4) benign(0.157) TCGA-33-4587-01 1 180240395 180240395 C T LHX4 Intron 0.14 TCGA-33-4587-01 1 197396958 197396958 C A CRB1 Missense_Mutation p.L835I 0.25 deleterious(0.01) possibly_damaging(0.452) TCGA-33-4587-01 1 204438206 204438206 G A PIK3C2B Missense_Mutation p.S242L 0.05 tolerated_low_confidence(0.05) benign(0.436) TCGA-33-4587-01 1 22974151 22974151 G T C1QC Missense_Mutation p.G205C 0.33 deleterious(0) probably_damaging(1) TCGA-33-4587-01 1 232942757 232942757 G - MAP10 Frame_Shift_Del p.R663Kfs*26 0.16 TCGA-33-4587-01 1 240371390 240371390 G A FMN2 Missense_Mutation p.G1093E 0.21 unknown(0) TCGA-33-4587-01 1 247006034 247006034 C T AHCTF1 Silent p.A2199A 0.17 TCGA-33-4587-01 1 247016430 247016430 G C AHCTF1 Missense_Mutation p.P1518R 0.50 tolerated(0.09) benign(0.033) TCGA-33-4587-01 1 247655215 247655215 C T OR2W5 RNA 0.24 TCGA-33-4587-01 1 247769617 247769617 C A OR2G3 Missense_Mutation p.H244N 0.67 deleterious(0) probably_damaging(0.986) TCGA-33-4587-01 1 248059384 248059384 T A OR2W3 Missense_Mutation p.L166I 0.61 deleterious(0.01) possibly_damaging(0.706) TCGA-33-4587-01 1 33248013 33248013 G C YARS Nonsense_Mutation p.S345* 0.18 TCGA-33-4587-01 1 33248134 33248134 G T YARS Missense_Mutation p.H305N 0.29 deleterious(0.03) possibly_damaging(0.483) TCGA-33-4587-01 1 40434403 40434403 C A MFSD2A Silent p.A518A 0.21 TCGA-33-4587-01 1 40562791 40562791 C T PPT1 Silent p.G40G 0.24 TCGA-33-4587-01 1 40562911 40562911 C T PPT1 5'UTR 0.27 TCGA-33-4587-01 1 45479691 45479691 C T UROD Silent p.L195L 0.10 TCGA-33-4587-01 1 55547090 55547090 C A USP24 Missense_Mutation p.R2328L 0.18 deleterious(0.02) benign(0.027) TCGA-33-4587-01 1 85725271 85725271 C T C1orf52 Missense_Mutation p.G16R 0.33 deleterious(0) benign(0.062) TCGA-33-4587-01 1 8601331 8601331 C T RERE Missense_Mutation p.E258K 0.06 probably_damaging(0.977) TCGA-33-4587-01 20 13756746 13756746 C T ESF1 Missense_Mutation p.D270N 0.14 tolerated_low_confidence(0.41) benign(0.001) TCGA-33-4587-01 20 17614162 17614162 C T RRBP1 Silent p.Q418Q 0.22 TCGA-33-4587-01 20 25597028 25597028 C T NANP Missense_Mutation p.E94K 0.31 tolerated(0.8) benign(0.006) TCGA-33-4587-01 20 44512618 44512618 G C ZSWIM1 Missense_Mutation p.E463Q 0.18 tolerated(0.22) benign(0.056) TCGA-33-4587-01 20 57766269 57766269 G T ZNF831 Silent p.T65T 0.50 TCGA-33-4587-01 20 60892541 60892541 G A LAMA5 Silent p.L2457L 0.09 TCGA-33-4587-01 20 61834321 61834321 G A YTHDF1 Missense_Mutation p.P324L 0.53 tolerated(0.25) benign(0.003) TCGA-33-4587-01 20 62616377 62616377 C T PRPF6 Missense_Mutation p.R120W 0.12 deleterious(0) probably_damaging(0.997) TCGA-33-4587-01 20 62729406 62729406 G T OPRL1 Missense_Mutation p.R162L 0.63 deleterious(0) probably_damaging(1) TCGA-33-4587-01 21 10944676 10944676 A G TPTE Silent p.N186N 0.20 TCGA-33-4587-01 21 34399341 34399341 C G OLIG2 Silent p.G57G 0.50 TCGA-33-4587-01 21 46011501 46011501 G T KRTAP10-6 Missense_Mutation p.Q289K 0.35 tolerated(0.19) unknown(0) TCGA-33-4587-01 22 37603139 37603139 G A SSTR3 Missense_Mutation p.S235L 0.93 deleterious(0) probably_damaging(0.996) TCGA-33-4587-01 2 116447458 116447458 C T DPP10 Silent p.V183V 0.15 TCGA-33-4587-01 2 132021395 132021395 C A POTEE Silent p.T789T 0.43 TCGA-33-4587-01 2 141264399 141264399 G C LRP1B Missense_Mutation p.D2829E 0.47 possibly_damaging(0.739) TCGA-33-4587-01 2 162738892 162738892 C A SLC4A10 Missense_Mutation p.L378M 0.47 tolerated(0.28) benign(0.16) TCGA-33-4587-01 2 179579173 179579173 G C TTN Missense_Mutation p.I8776M 0.46 TCGA-33-4587-01 2 179579793 179579793 G A TTN Missense_Mutation p.A8707V 0.36 TCGA-33-4587-01 2 182360518 182360518 C T ITGA4 Missense_Mutation p.P465L 0.62 deleterious(0) probably_damaging(0.986) TCGA-33-4587-01 2 185801880 185801880 A T ZNF804A Missense_Mutation p.H586L 0.48 deleterious(0) benign(0.193) TCGA-33-4587-01 2 185802154 185802154 G A ZNF804A Nonsense_Mutation p.W677* 0.48 TCGA-33-4587-01 2 187366044 187366044 C T ZC3H15 Nonsense_Mutation p.Q112* 0.52 TCGA-33-4587-01 2 189898679 189898679 G A COL5A2 3'UTR 0.43 TCGA-33-4587-01 2 201800586 201800586 C A ORC2 Nonsense_Mutation p.E182* 0.37 TCGA-33-4587-01 2 201846441 201846441 C T FAM126B Missense_Mutation p.R382H 0.51 deleterious(0.03) benign(0.006) TCGA-33-4587-01 2 21232750 21232750 T G APOB Silent p.V2330V 0.41 TCGA-33-4587-01 2 234107008 234107008 G T INPP5D Missense_Mutation p.R975S 0.43 deleterious_low_confidence(0.03) possibly_damaging(0.761) TCGA-33-4587-01 2 241569288 241569288 G T GPR35 Intron 0.54 TCGA-33-4587-01 2 26667780 26667780 G A DRC1 Missense_Mutation p.A454T 0.08 deleterious(0.04) benign(0.168) TCGA-33-4587-01 2 27360436 27360436 C G C2orf53 Silent p.V254V 0.42 TCGA-33-4587-01 2 69092855 69092855 C G BMP10 Missense_Mutation p.E395Q 0.38 deleterious(0.01) possibly_damaging(0.742) TCGA-33-4587-01 3 108160055 108160055 G A MYH15 Missense_Mutation p.S923F 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-33-4587-01 3 112709915 112709915 G C GTPBP8 Silent p.L23L 0.23 TCGA-33-4587-01 3 11340842 11340842 C T ATG7 Missense_Mutation p.S56F 0.75 tolerated(0.09) benign(0.027) TCGA-33-4587-01 3 113517090 113517090 G T ATP6V1A Missense_Mutation p.V431L 0.42 tolerated(0.06) possibly_damaging(0.823) TCGA-33-4587-01 3 124454030 124454030 A G UMPS Missense_Mutation p.T83A 0.31 deleterious(0.03) benign(0.434) TCGA-33-4587-01 3 124811000 124811000 C G SLC12A8 Missense_Mutation p.R583T 0.42 tolerated(0.1) benign(0.044) TCGA-33-4587-01 3 130095157 130095157 G A COL6A5 Missense_Mutation p.V49M 0.14 tolerated(0.14) possibly_damaging(0.484) TCGA-33-4587-01 3 14513715 14513715 C A SLC6A6 Missense_Mutation p.P367T 0.83 deleterious(0) probably_damaging(1) TCGA-33-4587-01 3 155208647 155208647 G - PLCH1 Frame_Shift_Del p.P761Lfs*12 0.27 TCGA-33-4587-01 3 179576885 179576885 C T PEX5L Missense_Mutation p.E263K 0.12 deleterious(0) probably_damaging(0.968) TCGA-33-4587-01 3 183388834 183388834 G A KLHL24 Missense_Mutation p.G413S 0.30 deleterious(0) probably_damaging(1) TCGA-33-4587-01 3 197346714 197346714 C G AC024560.3 RNA 0.10 TCGA-33-4587-01 3 39307363 39307363 C A CX3CR1 Missense_Mutation p.R245I 0.73 deleterious(0.04) possibly_damaging(0.751) TCGA-33-4587-01 4 113348753 113348753 G T ALPK1 Missense_Mutation p.A243S 0.41 deleterious(0) probably_damaging(0.986) TCGA-33-4587-01 4 113351799 113351799 A G ALPK1 Missense_Mutation p.R366G 0.23 deleterious(0.02) benign(0.013) TCGA-33-4587-01 4 119948510 119948510 C T SYNPO2 Missense_Mutation p.S329L 0.15 deleterious(0.01) probably_damaging(0.976) TCGA-33-4587-01 4 173150879 173150879 G A GALNTL6 Missense_Mutation p.D71N 0.22 tolerated(0.26) benign(0.004) TCGA-33-4587-01 4 3024165 3024165 C T GRK4 Silent p.L319L 0.27 TCGA-33-4587-01 4 39839727 39839727 T A PDS5A Silent p.T1253T 0.73 TCGA-33-4587-01 4 48384777 48384777 C T SLAIN2 Missense_Mutation p.P352L 0.18 tolerated(0.09) probably_damaging(0.999) TCGA-33-4587-01 4 79297034 79297034 G C FRAS1 Splice_Site p.X1098_splice 0.67 TCGA-33-4587-01 4 79308792 79308792 C T FRAS1 Silent p.V1304V 0.64 TCGA-33-4587-01 4 89625366 89625366 C T HERC3 Silent p.F925F 0.22 TCGA-33-4587-01 5 102488374 102488374 G C PPIP5K2 Missense_Mutation p.A351P 0.87 deleterious(0) probably_damaging(0.996) TCGA-33-4587-01 5 11346728 11346728 G T CTNND2 Missense_Mutation p.P462T 0.56 tolerated(0.07) probably_damaging(0.959) TCGA-33-4587-01 5 137680961 137680961 G T FAM53C Missense_Mutation p.S195I 0.86 deleterious(0.01) possibly_damaging(0.883) TCGA-33-4587-01 5 140595352 140595352 G C PCDHB13 Missense_Mutation p.D553H 0.86 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-33-4587-01 5 16091081 16091081 C A MARCH11 Missense_Mutation p.S268I 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-33-4587-01 5 171765464 171765464 T C SH3PXD2B Missense_Mutation p.N882S 0.77 tolerated(0.06) benign(0.122) TCGA-33-4587-01 5 175823482 175823482 G A CLTB Silent p.Y172Y 0.77 TCGA-33-4587-01 5 176893795 176893795 C G DBN1 Missense_Mutation p.R252P 0.76 deleterious(0.01) probably_damaging(0.997) TCGA-33-4587-01 5 37169351 37169351 C T C5orf42 Missense_Mutation p.E2259K 0.29 tolerated(0.07) benign(0.442) TCGA-33-4587-01 5 41181623 41181623 G T C6 Nonsense_Mutation p.Y255* 0.26 TCGA-33-4587-01 5 72311495 72311495 G T FCHO2 Nonsense_Mutation p.E215* 0.90 TCGA-33-4587-01 6 129499012 129499012 G T LAMA2 Splice_Site p.X489_splice 0.35 TCGA-33-4587-01 6 143825264 143825264 A G FUCA2 Missense_Mutation p.Y180H 0.38 deleterious(0) probably_damaging(1) TCGA-33-4587-01 6 148761336 148761336 G T SASH1 Missense_Mutation p.S101I 0.48 deleterious_low_confidence(0.04) probably_damaging(0.938) TCGA-33-4587-01 6 150016238 150016238 G A LATS1 Silent p.A156A 0.41 TCGA-33-4587-01 6 152668294 152668294 T A SYNE1 Missense_Mutation p.Q3993L 0.54 benign(0.008) TCGA-33-4587-01 6 152730758 152730758 C G SYNE1 Missense_Mutation p.S2106T 0.46 benign(0.003) TCGA-33-4587-01 6 24843421 24843421 T G FAM65B Missense_Mutation p.H530P 0.62 tolerated(0.29) benign(0.002) TCGA-33-4587-01 6 31431753 31431753 C T HCP5 RNA 0.25 TCGA-33-4587-01 6 31597533 31597533 G T PRRC2A Missense_Mutation p.R722L 0.52 benign(0.25) TCGA-33-4587-01 6 33164315 33164315 C A RXRB Nonsense_Mutation p.E297* 0.29 TCGA-33-4587-01 6 35544862 35544862 G T FKBP5 Missense_Mutation p.S392Y 0.13 tolerated(1) benign(0.057) TCGA-33-4587-01 6 38759382 38759382 A T DNAH8 Nonsense_Mutation p.K728* 0.32 TCGA-33-4587-01 6 94120851 94120851 G - EPHA7 Frame_Shift_Del p.P67Rfs*34 0.22 TCGA-33-4587-01 6 96034379 96034379 C G MANEA Missense_Mutation p.L22V 0.19 tolerated(0.83) benign(0.007) TCGA-33-4587-01 7 126409931 126409931 C A GRM8 Missense_Mutation p.V449L 0.44 deleterious(0.02) possibly_damaging(0.572) TCGA-33-4587-01 7 128371299 128371299 G C FAM71F1 3'UTR 0.44 TCGA-33-4587-01 7 138604100 138604100 T A KIAA1549 Missense_Mutation p.Q91L 0.46 deleterious(0.01) benign(0.035) TCGA-33-4587-01 7 148480885 148480885 T C CUL1 Missense_Mutation p.M365T 0.49 tolerated(0.3) benign(0.004) TCGA-33-4587-01 7 149508782 149508782 G A SSPO RNA 0.39 TCGA-33-4587-01 7 150558161 150558161 C - AOC1 Frame_Shift_Del p.L708Wfs*7 0.30 TCGA-33-4587-01 7 150776710 150776710 G A FASTK Missense_Mutation p.R128W 0.48 deleterious_low_confidence(0) possibly_damaging(0.513) TCGA-33-4587-01 7 152346281 152346281 C G XRCC2 Missense_Mutation p.E97Q 0.45 deleterious(0) probably_damaging(0.985) TCGA-33-4587-01 7 38305255 38305255 G A TRGC1 Missense_Mutation p.S9F 0.03 tolerated(0.12) probably_damaging(0.911) TCGA-33-4587-01 7 41729388 41729388 G T INHBA Missense_Mutation p.H381N 0.28 tolerated(0.1) benign(0.004) TCGA-33-4587-01 7 4820815 4820815 G A AP5Z1 Silent p.Q17Q 0.38 TCGA-33-4587-01 7 49842394 49842394 C A VWC2 Missense_Mutation p.P262T 0.37 deleterious(0) probably_damaging(0.999) TCGA-33-4587-01 7 57522868 57522868 C A ZNF716 Missense_Mutation p.H86N 0.38 deleterious(0.04) possibly_damaging(0.709) TCGA-33-4587-01 7 82585506 82585506 C G PCLO Missense_Mutation p.S1588T 0.43 unknown(0) TCGA-33-4587-01 7 83591143 83591143 C G SEMA3A Splice_Site p.X621_splice 0.50 TCGA-33-4587-01 7 92734330 92734330 C A SAMD9 Missense_Mutation p.A361S 0.40 tolerated(0.52) benign(0.004) TCGA-33-4587-01 7 99045755 99045782 CCGTTTCGCCACATCAGTGGTGAGAAGA - CPSF4 Frame_Shift_Del p.P56Qfs*26 0.29 TCGA-33-4587-01 8 113988159 113988159 G T CSMD3 Missense_Mutation p.P417T 0.73 tolerated(1) benign(0) TCGA-33-4587-01 8 125072876 125072876 G T FER1L6 Missense_Mutation p.G1025C 0.21 tolerated(0.09) probably_damaging(0.992) TCGA-33-4587-01 8 133764221 133764221 C A TMEM71 Missense_Mutation p.G42C 0.70 deleterious(0) probably_damaging(0.992) TCGA-33-4587-01 8 139703119 139703119 T A COL22A1 Splice_Site p.X919_splice 0.67 TCGA-33-4587-01 8 144733754 144733754 G T ZNF623 3'UTR 0.88 TCGA-33-4587-01 8 144733755 144733755 G T ZNF623 3'UTR 0.88 TCGA-33-4587-01 8 145541081 145541081 A T DGAT1 Missense_Mutation p.F337I 0.18 deleterious(0.01) probably_damaging(0.978) TCGA-33-4587-01 8 27312094 27312094 T C PTK2B Missense_Mutation p.L927P 0.16 deleterious(0.03) possibly_damaging(0.776) TCGA-33-4587-01 8 27312095 27312095 C T PTK2B Silent p.L927L 0.15 TCGA-33-4587-01 8 3059246 3059246 C A CSMD1 Silent p.V1662V 0.50 TCGA-33-4587-01 8 39089562 39089562 A G ADAM32 Silent p.P514P 0.16 TCGA-33-4587-01 8 63492235 63492235 G T NKAIN3 Silent p.V64V 0.62 TCGA-33-4587-01 8 63492236 63492236 G T NKAIN3 Splice_Site p.X64_splice 0.61 TCGA-33-4587-01 8 69020477 69020477 C T PREX2 Missense_Mutation p.T950I 0.14 deleterious_low_confidence(0.03) benign(0.272) TCGA-33-4587-01 9 107288756 107288756 C A OR13C4 Silent p.L245L 0.87 TCGA-33-4587-01 9 115642012 115642012 G A SLC46A2 3'UTR 0.90 TCGA-33-4587-01 9 139392011 139392011 C A NOTCH1 Splice_Site p.X2061_splice 0.69 TCGA-33-4587-01 9 139726795 139726795 C T RABL6 Silent p.F227F 0.17 TCGA-33-4587-01 9 15187003 15187003 A G TTC39B Silent p.L476L 0.33 TCGA-33-4587-01 9 34098345 34098345 G A DCAF12 Silent p.L258L 0.16 TCGA-33-4587-01 9 88574749 88574749 G A NAA35 Silent p.L105L 0.50 TCGA-33-4587-01 9 96305736 96305736 G A FAM120A Silent p.V714V 0.81 TCGA-33-4587-01 X 123504033 123504033 C T SH2D1A Missense_Mutation p.P70L 0.91 deleterious(0) probably_damaging(1) TCGA-33-4587-01 X 123538999 123538999 G A TENM1 Missense_Mutation p.P1758L 0.88 deleterious(0) possibly_damaging(0.885) TCGA-33-4587-01 X 1331512 1331512 G A CRLF2 Silent p.L6L 0.14 TCGA-33-4587-01 X 153593288 153593288 G A FLNA Nonsense_Mutation p.Q577* 0.81 TCGA-33-4587-01 X 15585948 15585949 - A ACE2 Frame_Shift_Ins p.Y633Lfs*2 0.14 TCGA-33-4587-01 X 24744148 24744148 T A POLA1 Silent p.S450S 0.39 TCGA-33-4587-01 X 24861723 24861723 C A POLA1 Missense_Mutation p.L1320M 0.22 tolerated(0.23) benign(0.098) TCGA-33-4587-01 X 2853098 2853098 G T ARSE Missense_Mutation p.D515E 0.29 tolerated(0.19) benign(0.017) TCGA-33-4587-01 X 30254555 30254555 G C MAGEB3 Missense_Mutation p.D172H 0.55 deleterious(0) possibly_damaging(0.58) TCGA-33-4587-01 X 30326378 30326378 C A NR0B1 Missense_Mutation p.C368F 0.40 tolerated(0.45) probably_damaging(0.983) TCGA-33-4587-01 X 31893353 31893353 C A DMD Missense_Mutation p.Q2350H 0.48 benign(0.044) TCGA-33-4587-01 X 32486743 32486743 A T DMD Missense_Mutation p.S1012T 0.33 probably_damaging(0.961) TCGA-33-4587-01 X 37027799 37027799 G A FAM47C Missense_Mutation p.R439H 0.39 tolerated(0.55) benign(0.014) TCGA-33-4587-01 X 37664274 37664274 G T CYBB Silent p.G389G 0.52 TCGA-33-4587-01 X 38009126 38009126 G A SRPX Silent p.L411L 0.31 TCGA-33-4587-01 X 48209476 48209476 G C SSX3 Missense_Mutation p.Q138E 0.16 tolerated(0.22) benign(0.003) TCGA-33-4587-01 X 48320167 48320167 G A SLC38A5 Missense_Mutation p.P263L 0.27 deleterious(0) probably_damaging(1) TCGA-33-4587-01 X 48972576 48972576 G T GPKOW Silent p.R339R 0.46 TCGA-33-4587-01 X 50376975 50376975 T A SHROOM4 Missense_Mutation p.T700S 0.16 tolerated(0.39) benign(0.006) TCGA-33-4587-01 X 53634574 53634574 C A HUWE1 Missense_Mutation p.L802F 0.40 probably_damaging(1) TCGA-33-4587-01 X 53658408 53658408 C G HUWE1 Missense_Mutation p.M240I 0.32 possibly_damaging(0.718) TCGA-33-4587-01 X 54784574 54784574 C A ITIH6 Missense_Mutation p.V645L 0.50 tolerated(0.18) benign(0.001) TCGA-33-4587-01 X 54964053 54964054 - A PFKFB1 Frame_Shift_Ins p.A402Gfs*6 0.28 TCGA-33-4587-01 X 7811165 7811165 G A VCX 5'UTR 0.42 TCGA-33-4589-01 10 129905058 129905058 C T MKI67 Silent p.Q1682Q 0.30 TCGA-33-4589-01 10 38407555 38407555 G C ZNF37A Missense_Mutation p.Q492H 0.13 deleterious(0.02) benign(0.007) TCGA-33-4589-01 10 68688084 68688084 G A LRRTM3 Silent p.K470K 0.14 TCGA-33-4589-01 10 76797726 76797726 C A DUPD1 Silent p.V177V 0.16 TCGA-33-4589-01 11 124006946 124006946 C T VWA5A Silent p.V490V 0.38 TCGA-33-4589-01 11 35243214 35243214 C T CD44 Silent p.I653I 0.23 TCGA-33-4589-01 11 68777348 68777348 C T MRGPRF Missense_Mutation p.E8K 0.11 deleterious_low_confidence(0.02) benign(0.156) TCGA-33-4589-01 12 101773217 101773220 TTAC - UTP20 Frame_Shift_Del p.L2489Sfs*27 0.18 TCGA-33-4589-01 12 10955016 10955016 C G TAS2R7 Missense_Mutation p.A52P 0.04 deleterious(0) probably_damaging(1) TCGA-33-4589-01 12 112147393 112147393 G C ACAD10 Missense_Mutation p.E199Q 0.16 tolerated(0.21) benign(0.366) TCGA-33-4589-01 12 121854173 121854173 G A RNF34 Missense_Mutation p.R74K 0.16 tolerated(0.11) possibly_damaging(0.843) TCGA-33-4589-01 12 2939730 2939730 G T NRIP2 Intron 0.15 TCGA-33-4589-01 12 46756864 46756864 G C SLC38A2 Silent p.L373L 0.11 TCGA-33-4589-01 12 6125326 6125326 G A VWF Missense_Mutation p.A1795V 0.25 tolerated(1) probably_damaging(0.923) TCGA-33-4589-01 12 70760724 70760724 C T KCNMB4 Silent p.F70F 0.15 TCGA-33-4589-01 12 7248950 7248950 C G C1RL 3'UTR 0.20 TCGA-33-4589-01 12 9875204 9875204 T C CLECL1 3'UTR 0.22 TCGA-33-4589-01 13 108518905 108518905 C T FAM155A Missense_Mutation p.G14S 0.07 deleterious(0.04) probably_damaging(0.999) TCGA-33-4589-01 13 111367717 111367717 C G ING1 5'UTR 0.26 TCGA-33-4589-01 13 42788647 42788647 T G DGKH Missense_Mutation p.C1007G 0.08 tolerated(0.28) benign(0.313) TCGA-33-4589-01 13 96536839 96536839 G A UGGT2 Missense_Mutation p.S1045L 0.08 deleterious(0) possibly_damaging(0.794) TCGA-33-4589-01 14 106174805 106174805 C T IGHA1 Silent p.T66T 0.15 TCGA-33-4589-01 14 64935581 64935581 G A AKAP5 Missense_Mutation p.E157K 0.20 tolerated(0.57) benign(0.018) TCGA-33-4589-01 14 69522118 69522118 C T DCAF5 Missense_Mutation p.G429S 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-33-4589-01 14 74036147 74036147 T C ACOT2 Missense_Mutation p.I68T 0.34 tolerated(0.67) benign(0.001) TCGA-33-4589-01 14 74823526 74823526 G A VRTN Missense_Mutation p.E14K 0.32 tolerated(0.1) benign(0.185) TCGA-33-4589-01 15 22868959 22868959 G A TUBGCP5 Missense_Mutation p.R944K 0.22 tolerated(0.08) benign(0.157) TCGA-33-4589-01 15 40594507 40594507 G A PLCB2 Missense_Mutation p.T139M 0.25 tolerated(0.07) benign(0.026) TCGA-33-4589-01 15 48458211 48458211 G C MYEF2 Missense_Mutation p.F148L 0.08 deleterious(0) probably_damaging(0.991) TCGA-33-4589-01 15 51014329 51014329 G C SPPL2A Missense_Mutation p.S440C 0.25 tolerated(1) benign(0.02) TCGA-33-4589-01 15 56209060 56209060 G A NEDD4 5'UTR 0.15 TCGA-33-4589-01 15 60720858 60720858 G C NARG2 Missense_Mutation p.H864D 0.16 deleterious(0) probably_damaging(0.999) TCGA-33-4589-01 16 3779746 3779746 G A CREBBP Missense_Mutation p.R1768C 0.26 unknown(0) TCGA-33-4589-01 16 67575627 67575627 T A FAM65A Missense_Mutation p.F361Y 0.22 deleterious(0) possibly_damaging(0.908) TCGA-33-4589-01 16 69725988 69725988 G A NFAT5 Missense_Mutation p.E754K 0.16 benign(0.427) TCGA-33-4589-01 16 71710473 71710473 G A PHLPP2 Nonsense_Mutation p.R450* 0.30 TCGA-33-4589-01 17 4873333 4873333 G A CAMTA2 Missense_Mutation p.S1041F 0.04 deleterious(0.01) possibly_damaging(0.864) TCGA-33-4589-01 17 7252446 7252446 G A ACAP1 Missense_Mutation p.G604D 0.28 tolerated(0.25) benign(0.193) TCGA-33-4589-01 17 80007675 80007675 C T RFNG Missense_Mutation p.D236N 0.08 deleterious(0.01) probably_damaging(1) TCGA-33-4589-01 19 11472092 11472092 C T DKFZP761J1410 Silent p.L172L 0.09 TCGA-33-4589-01 19 12978565 12978565 G C MAST1 Missense_Mutation p.E780D 0.39 tolerated_low_confidence(0.06) possibly_damaging(0.868) TCGA-33-4589-01 19 15733988 15733988 C T CYP4F8 RNA 0.15 TCGA-33-4589-01 19 18685909 18685909 G A UBA52 Silent p.K112K 0.12 TCGA-33-4589-01 19 19039006 19039006 G A DDX49 Missense_Mutation p.E445K 0.21 tolerated(0.26) benign(0.013) TCGA-33-4589-01 19 22154287 22154287 G C ZNF208 Missense_Mutation p.I1183M 0.06 tolerated(0.27) benign(0.211) TCGA-33-4589-01 19 41931543 41931543 G A B3GNT8 Nonsense_Mutation p.Q381* 0.22 TCGA-33-4589-01 19 5914581 5914581 C T CAPS Missense_Mutation p.R31C 0.07 deleterious(0.02) benign(0.041) TCGA-33-4589-01 19 7623788 7623788 G A PNPLA6 Silent p.G1160G 0.24 TCGA-33-4589-01 19 8321594 8321594 G A CERS4 Silent p.K204K 0.14 TCGA-33-4589-01 1 10166277 10166277 C G UBE4B Missense_Mutation p.P278A 0.18 tolerated_low_confidence(0.06) possibly_damaging(0.539) TCGA-33-4589-01 1 108728455 108728455 T A SLC25A24 Missense_Mutation p.N102I 0.14 deleterious(0.02) possibly_damaging(0.835) TCGA-33-4589-01 1 11141268 11141268 G A EXOSC10 Silent p.Y436Y 0.23 TCGA-33-4589-01 1 149783771 149783771 C G HIST2H2BF Missense_Mutation p.E36D 0.17 deleterious_low_confidence(0.02) benign(0.039) TCGA-33-4589-01 1 150483602 150483602 C T ECM1 Silent p.F239F 0.27 TCGA-33-4589-01 1 151318422 151318422 G T RFX5 Missense_Mutation p.N44K 0.14 tolerated(0.12) possibly_damaging(0.52) TCGA-33-4589-01 1 152083772 152083772 C T TCHH Missense_Mutation p.E641K 0.15 unknown(0) TCGA-33-4589-01 1 156779201 156779201 G A SH2D2A Nonsense_Mutation p.R276* 0.13 TCGA-33-4589-01 1 220310189 220310189 G C IARS2 Missense_Mutation p.G662A 0.17 tolerated(0.05) possibly_damaging(0.856) TCGA-33-4589-01 1 2418715 2418715 C T PLCH2 Silent p.T311T 0.15 TCGA-33-4589-01 1 248569592 248569592 C T OR2T1 Silent p.I99I 0.11 TCGA-33-4589-01 1 249149991 249149991 C T ZNF692 Missense_Mutation p.E277K 0.19 deleterious(0.05) possibly_damaging(0.606) TCGA-33-4589-01 1 45266803 45266803 C T PLK3 Silent p.F138F 0.19 TCGA-33-4589-01 1 52303253 52303253 C G NRD1 Missense_Mutation p.D224H 0.25 tolerated_low_confidence(0.13) benign(0) TCGA-33-4589-01 1 93575920 93575920 G A MTF2 Missense_Mutation p.E47K 0.12 tolerated(0.59) benign(0.045) TCGA-33-4589-01 1 93594941 93594941 G T MTF2 Nonsense_Mutation p.E366* 0.10 TCGA-33-4589-01 20 24523909 24523909 C T SYNDIG1 Missense_Mutation p.P59L 0.17 tolerated(0.43) benign(0.079) TCGA-33-4589-01 20 36640890 36640890 G C TTI1 Missense_Mutation p.I443M 0.11 deleterious(0) possibly_damaging(0.622) TCGA-33-4589-01 21 45681066 45681066 G C DNMT3L Nonsense_Mutation p.S26* 0.16 TCGA-33-4589-01 22 19036097 19036097 T A DGCR2 Nonsense_Mutation p.K288* 0.23 TCGA-33-4589-01 2 102314980 102314980 A C MAP4K4 Missense_Mutation p.T35P 0.06 deleterious_low_confidence(0) unknown(0) TCGA-33-4589-01 2 163133400 163133400 G C IFIH1 Missense_Mutation p.L701V 0.08 deleterious(0) probably_damaging(0.999) TCGA-33-4589-01 2 170090031 170090031 C T LRP2 Missense_Mutation p.R1663H 0.08 benign(0.001) TCGA-33-4589-01 2 178098960 178098960 C T NFE2L2 Missense_Mutation p.D29N 0.30 deleterious(0) probably_damaging(1) TCGA-33-4589-01 2 178482404 178482404 G A TTC30A Silent p.V342V 0.08 TCGA-33-4589-01 2 180041264 180041264 C G SESTD1 Missense_Mutation p.E56Q 0.25 tolerated(0.16) benign(0.071) TCGA-33-4589-01 2 182403943 182403943 G A CERKL Missense_Mutation p.H498Y 0.28 tolerated(1) benign(0.002) TCGA-33-4589-01 2 209200027 209200027 C G PIKFYVE Intron 0.26 TCGA-33-4589-01 2 211513196 211513196 G T CPS1 Splice_Site p.X1119_splice 0.08 TCGA-33-4589-01 2 44502977 44502977 C T SLC3A1 Silent p.I101I 0.11 TCGA-33-4589-01 2 46228632 46228632 G A PRKCE Missense_Mutation p.D305N 0.12 tolerated(0.15) benign(0.031) TCGA-33-4589-01 2 70504567 70504567 C - PCYOX1 3'UTR 0.16 TCGA-33-4589-01 2 79348026 79348026 C T REG1A Silent p.C13C 0.05 TCGA-33-4589-01 3 114069872 114069872 G A ZBTB20 Silent p.N351N 0.12 TCGA-33-4589-01 3 149374822 149374822 G A WWTR1 Missense_Mutation p.P91L 0.33 deleterious(0) probably_damaging(0.997) TCGA-33-4589-01 3 167422642 167422642 G A PDCD10 Silent p.A46A 0.15 TCGA-33-4589-01 3 31789508 31789508 C T OSBPL10 Silent p.L278L 0.24 TCGA-33-4589-01 3 40573572 40573572 C G ZNF621 Missense_Mutation p.S104C 0.39 tolerated(0.08) benign(0.319) TCGA-33-4589-01 3 64085066 64085066 G C PRICKLE2 Missense_Mutation p.F732L 0.30 tolerated(0.65) benign(0) TCGA-33-4589-01 4 10502935 10502935 C T CLNK Missense_Mutation p.R362H 0.27 deleterious(0) probably_damaging(0.996) TCGA-33-4589-01 4 1165258 1165258 G A SPON2 Silent p.S79S 0.09 TCGA-33-4589-01 4 175898913 175898913 C T ADAM29 Missense_Mutation p.T746M 0.33 tolerated(0.15) benign(0.003) TCGA-33-4589-01 4 187540200 187540200 C - FAT1 Frame_Shift_Del p.V2514* 0.19 TCGA-33-4589-01 4 39839793 39839793 G A PDS5A Silent p.I1231I 0.28 TCGA-33-4589-01 4 42403275 42403275 T C SHISA3 Missense_Mutation p.I175T 0.07 tolerated(0.16) benign(0.129) TCGA-33-4589-01 4 71891636 71891636 A T DCK Missense_Mutation p.H218L 0.09 deleterious(0.01) benign(0.156) TCGA-33-4589-01 4 83788383 83788383 C T SEC31A Silent p.S323S 0.06 TCGA-33-4589-01 4 83849298 83849298 G A LIN54 Missense_Mutation p.S736F 0.23 tolerated(0.1) benign(0.081) TCGA-33-4589-01 4 84358247 84358247 T C HELQ Silent p.E604E 0.08 TCGA-33-4589-01 5 140346846 140346846 G A PCDHAC2 Silent p.A165A 0.12 TCGA-33-4589-01 5 181742 181742 T G PLEKHG4B Missense_Mutation p.C1150G 0.15 tolerated_low_confidence(0.37) benign(0.227) TCGA-33-4589-01 5 33624432 33624432 C T ADAMTS12 Missense_Mutation p.D683N 0.25 tolerated(0.22) benign(0.025) TCGA-33-4589-01 5 34922649 34922649 C G BRIX1 Nonsense_Mutation p.S131* 0.13 TCGA-33-4589-01 5 94288978 94288978 C A MCTP1 Missense_Mutation p.W309L 0.18 deleterious(0) probably_damaging(1) TCGA-33-4589-01 6 100062509 100062509 G T PRDM13 Silent p.P666P 0.26 TCGA-33-4589-01 6 158565393 158565393 G A SERAC1 Nonsense_Mutation p.R183* 0.22 TCGA-33-4589-01 6 33162502 33162502 G C RXRB Missense_Mutation p.T524S 0.07 tolerated(0.18) probably_damaging(0.967) TCGA-33-4589-01 6 33282951 33282951 G C ZBTB22 Silent p.P581P 0.25 TCGA-33-4589-01 6 33283480 33283480 G A ZBTB22 Missense_Mutation p.S405F 0.15 deleterious(0.01) possibly_damaging(0.647) TCGA-33-4589-01 6 33283563 33283563 G T ZBTB22 Missense_Mutation p.F377L 0.15 deleterious(0.01) possibly_damaging(0.708) TCGA-33-4589-01 6 45870842 45870842 G A CLIC5 Missense_Mutation p.R406C 0.12 deleterious(0) probably_damaging(0.996) TCGA-33-4589-01 6 56471490 56471490 C T DST Intron 0.09 TCGA-33-4589-01 6 63990380 63990380 A G LGSN Missense_Mutation p.M359T 0.14 deleterious(0.04) benign(0.309) TCGA-33-4589-01 6 90465993 90465993 T G MDN1 Intron 0.17 TCGA-33-4589-01 7 103185729 103185729 G A RELN Missense_Mutation p.A2122V 0.10 deleterious(0) benign(0.109) TCGA-33-4589-01 7 127224653 127224653 T G GCC1 Missense_Mutation p.Q195P 0.29 deleterious(0.01) probably_damaging(0.921) TCGA-33-4589-01 7 131887433 131887433 C A PLXNA4 Missense_Mutation p.S853I 0.31 tolerated(0.19) benign(0.069) TCGA-33-4589-01 7 138764355 138764359 GGATC - ZC3HAV1 Frame_Shift_Del p.R443Ifs*7 0.30 TCGA-33-4589-01 7 21659685 21659685 G C DNAH11 Missense_Mutation p.E1502Q 0.25 probably_damaging(0.97) TCGA-33-4589-01 7 57528645 57528645 C A ZNF716 Missense_Mutation p.H160N 0.29 tolerated(0.68) possibly_damaging(0.674) TCGA-33-4589-01 7 80435020 80435020 A C SEMA3C Missense_Mutation p.I198S 0.31 deleterious(0) probably_damaging(0.979) TCGA-33-4589-01 8 143960567 143960567 C T CYP11B1 Missense_Mutation p.M92I 0.05 tolerated(0.13) possibly_damaging(0.791) TCGA-33-4589-01 8 145007512 145007512 C T PLEC Missense_Mutation p.R561Q 0.11 unknown(0) TCGA-33-4589-01 8 145649326 145649326 A C VPS28 Missense_Mutation p.C216G 0.11 tolerated_low_confidence(0.17) benign(0.003) TCGA-33-4589-01 8 21767409 21767409 C T DOK2 Missense_Mutation p.V218I 0.38 tolerated(0.53) benign(0.001) TCGA-33-4589-01 8 67590045 67590045 G C C8orf44 Missense_Mutation p.W34C 0.13 tolerated_low_confidence(0.12) possibly_damaging(0.788) TCGA-33-4589-01 8 69445354 69445354 G A C8orf34 Missense_Mutation p.D359N 0.08 deleterious(0.02) probably_damaging(0.991) TCGA-33-4589-01 8 72973934 72973934 C T TRPA1 Silent p.L290L 0.41 TCGA-33-4589-01 8 9473143 9473143 C T TNKS Missense_Mutation p.S317L 0.18 deleterious(0) benign(0.114) TCGA-33-4589-01 9 105767064 105767064 G A CYLC2 Missense_Mutation p.V90I 0.17 tolerated(0.29) possibly_damaging(0.896) TCGA-33-4589-01 9 112686103 112686103 G A PALM2-AKAP2 Missense_Mutation p.E116K 0.20 deleterious(0) benign(0.019) TCGA-33-4589-01 9 117826198 117826198 C G TNC Missense_Mutation p.V1213L 0.07 tolerated(0.26) possibly_damaging(0.762) TCGA-33-4589-01 9 130829216 130829216 G A NAIF1 Silent p.V55V 0.15 TCGA-33-4589-01 9 139616767 139616767 C T FAM69B Intron 0.22 TCGA-33-4589-01 9 21971108 21971108 C A CDKN2A Missense_Mutation p.D84Y 0.34 deleterious(0) probably_damaging(1) TCGA-33-4589-01 9 21971208 21971208 C T CDKN2A Splice_Site p.X51_splice 0.14 TCGA-33-4589-01 9 27229402 27229402 C T TEK 3'UTR 0.58 TCGA-33-4589-01 9 35699404 35699404 G A TLN1 Missense_Mutation p.R2275C 0.14 deleterious(0.04) benign(0.41) TCGA-33-4589-01 9 5054575 5054575 C G JAK2 Missense_Mutation p.F209L 0.11 tolerated(0.19) benign(0.04) TCGA-33-4589-01 X 129499580 129499580 G T SLC25A14 Missense_Mutation p.R262L 0.31 deleterious(0.02) benign(0.293) TCGA-33-4589-01 X 47836064 47836064 C T ZNF182 Missense_Mutation p.M474I 0.29 tolerated(1) benign(0.066) TCGA-33-4589-01 X 50659039 50659039 G A BMP15 Missense_Mutation p.R204Q 0.09 tolerated(0.31) benign(0.009) TCGA-33-4589-01 X 91090594 91090594 C T PCDH11X Nonsense_Mutation p.R31* 0.25 TCGA-33-6737-01 10 102054753 102054753 C A PKD2L1 Missense_Mutation p.G495V 0.19 deleterious(0) probably_damaging(0.994) TCGA-33-6737-01 10 104172152 104172152 C T PSD Silent p.R578R 0.31 TCGA-33-6737-01 10 1065705 1065705 C G IDI2 Missense_Mutation p.E146Q 0.28 deleterious(0) probably_damaging(0.967) TCGA-33-6737-01 10 108923810 108923810 T A SORCS1 Nonsense_Mutation p.R159* 0.17 TCGA-33-6737-01 10 108923811 108923811 C A SORCS1 Silent p.L158L 0.17 TCGA-33-6737-01 10 112361435 112361435 G A SMC3 Silent p.K895K 0.12 TCGA-33-6737-01 10 112361436 112361436 G A SMC3 Missense_Mutation p.E896K 0.12 tolerated(0.83) benign(0.016) TCGA-33-6737-01 10 117093882 117093882 G T ATRNL1 Missense_Mutation p.C1043F 0.16 deleterious(0) probably_damaging(0.997) TCGA-33-6737-01 10 118231286 118231286 G A PNLIPRP3 Missense_Mutation p.R356K 0.16 deleterious(0) benign(0.266) TCGA-33-6737-01 10 124013639 124013639 C T TACC2 3'UTR 0.12 TCGA-33-6737-01 10 135367790 135367790 C G SYCE1 3'Flank 0.44 TCGA-33-6737-01 10 15255181 15255181 C A FAM171A1 Silent p.G802G 0.35 TCGA-33-6737-01 10 17024625 17024625 C A CUBN Missense_Mutation p.S1518I 0.31 deleterious(0.01) possibly_damaging(0.774) TCGA-33-6737-01 10 26939628 26939628 C - LINC00202-2 RNA 0.28 TCGA-33-6737-01 10 282786 282786 G C ZMYND11 Missense_Mutation p.K149N 0.14 deleterious(0) probably_damaging(0.997) TCGA-33-6737-01 10 37508275 37508275 T A ANKRD30A Missense_Mutation p.I1156N 0.19 tolerated(0.15) benign(0) TCGA-33-6737-01 10 38407496 38407496 G T ZNF37A Missense_Mutation p.G473W 0.26 deleterious(0) probably_damaging(1) TCGA-33-6737-01 10 55591249 55591249 G T PCDH15 Missense_Mutation p.P1343Q 0.14 deleterious(0) probably_damaging(0.997) TCGA-33-6737-01 10 55600180 55600180 C A PCDH15 Nonsense_Mutation p.G1295* 0.29 TCGA-33-6737-01 10 68526066 68526066 C G CTNNA3 Missense_Mutation p.E413Q 0.28 tolerated(0.15) benign(0.406) TCGA-33-6737-01 10 75276616 75276616 G A USP54 Silent p.L1190L 0.30 TCGA-33-6737-01 10 91497625 91497625 C G KIF20B Silent p.L969L 0.15 TCGA-33-6737-01 10 93608302 93608302 C G TNKS2 Missense_Mutation p.L841V 0.17 tolerated(0.56) benign(0.145) TCGA-33-6737-01 10 93683782 93683782 C G BTAF1 5'UTR 0.16 TCGA-33-6737-01 10 93743 93743 C G TUBB8 Missense_Mutation p.D197H 0.30 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-33-6737-01 11 102825188 102825188 C A MMP13 Missense_Mutation p.K170N 0.49 tolerated(0.1) benign(0.358) TCGA-33-6737-01 11 108043625 108043625 C T NPAT Missense_Mutation p.E696K 0.55 tolerated(0.18) benign(0.023) TCGA-33-6737-01 11 108381581 108381581 C G EXPH5 Missense_Mutation p.E1551D 0.19 tolerated(0.2) benign(0.054) TCGA-33-6737-01 11 1087495 1087495 T A MUC2 Nonsense_Mutation p.C1082* 0.13 TCGA-33-6737-01 11 116719898 116719898 C A SIK3 Nonsense_Mutation p.E1147* 0.26 TCGA-33-6737-01 11 123886831 123886831 C G OR10G4 Missense_Mutation p.L184V 0.59 tolerated(0.07) probably_damaging(0.936) TCGA-33-6737-01 11 123909463 123909463 G A OR10G7 Silent p.T82T 0.55 TCGA-33-6737-01 11 126073239 126073239 C A RPUSD4 3'UTR 0.18 TCGA-33-6737-01 11 18029510 18029510 C T SERGEF Silent p.G58G 0.25 TCGA-33-6737-01 11 19077955 19077955 G T MRGPRX2 5'UTR 0.16 TCGA-33-6737-01 11 20124928 20124928 G T NAV2 Missense_Mutation p.G2241V 0.15 deleterious(0) probably_damaging(0.999) TCGA-33-6737-01 11 22294421 22294421 G T ANO5 Silent p.V707V 0.20 TCGA-33-6737-01 11 3062032 3062032 C G CARS Intron 0.20 TCGA-33-6737-01 11 30902710 30902710 G - DCDC1 Frame_Shift_Del p.P1740Qfs*4 0.15 TCGA-33-6737-01 11 320858 320858 C G IFITM3 5'UTR 0.23 TCGA-33-6737-01 11 32635290 32635290 G A CCDC73 Silent p.F858F 0.17 TCGA-33-6737-01 11 35226076 35226076 A G CD44 Missense_Mutation p.S391G 0.40 deleterious(0.01) benign(0.103) TCGA-33-6737-01 11 36595984 36595984 C G RAG1 Nonsense_Mutation p.S377* 0.22 TCGA-33-6737-01 11 43357478 43357478 G C API5 Missense_Mutation p.D476H 0.20 deleterious(0.03) possibly_damaging(0.903) TCGA-33-6737-01 11 4389100 4389100 C A OR52B4 Silent p.L142L 0.24 TCGA-33-6737-01 11 45265766 45265766 C G SYT13 Missense_Mutation p.S373T 0.38 tolerated(0.08) possibly_damaging(0.896) TCGA-33-6737-01 11 46772716 46772716 C G CKAP5 Missense_Mutation p.Q1804H 0.21 tolerated(0.13) benign(0.401) TCGA-33-6737-01 11 46898789 46898789 T C LRP4 Missense_Mutation p.M1080V 0.14 deleterious(0.03) benign(0.066) TCGA-33-6737-01 11 47809787 47809787 G C NUP160 Silent p.L1231L 0.19 TCGA-33-6737-01 11 55110996 55110996 G T OR4A16 Missense_Mutation p.G107V 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.555) TCGA-33-6737-01 11 55135617 55135617 C A OR4A15 Silent p.P86P 0.36 TCGA-33-6737-01 11 55579266 55579266 G T OR5L1 Silent p.V108V 0.16 TCGA-33-6737-01 11 55761313 55761313 A T OR5F1 Missense_Mutation p.S263R 0.16 tolerated(0.07) benign(0.114) TCGA-33-6737-01 11 56468503 56468503 C A OR9G1 Missense_Mutation p.L214M 0.05 deleterious(0.01) possibly_damaging(0.861) TCGA-33-6737-01 11 6635806 6635806 C A TPP1 Missense_Mutation p.A555S 0.19 tolerated(0.42) benign(0.01) TCGA-33-6737-01 11 66407139 66407139 C T RBM4 5'UTR 0.47 TCGA-33-6737-01 11 68029630 68029630 G C C11orf24 Nonsense_Mutation p.S278* 0.54 TCGA-33-6737-01 11 68851475 68851475 G A TPCN2 Silent p.G584G 0.37 TCGA-33-6737-01 11 77320423 77320423 C G AQP11 3'UTR 0.52 TCGA-33-6737-01 11 803520 803520 C T PIDD Silent p.L121L 0.22 TCGA-33-6737-01 11 884148 884148 G A CHID1 Silent p.F266F 0.21 TCGA-33-6737-01 11 89165992 89165992 C A NOX4 Missense_Mutation p.V170L 0.58 tolerated(0.1) benign(0.02) TCGA-33-6737-01 11 92533301 92533301 G A FAT3 Silent p.L2374L 0.11 TCGA-33-6737-01 11 99690344 99690344 C G CNTN5 Missense_Mutation p.S42C 0.06 deleterious_low_confidence(0.01) benign(0.319) TCGA-33-6737-01 11 99944898 99944898 G T CNTN5 Silent p.L484L 0.58 TCGA-33-6737-01 12 101436227 101436227 C G ANO4 Missense_Mutation p.L344V 0.23 tolerated(0.15) benign(0.373) TCGA-33-6737-01 12 105543464 105543464 C G KIAA1033 Missense_Mutation p.I862M 0.28 deleterious(0) probably_damaging(0.971) TCGA-33-6737-01 12 107279770 107279770 G C RIC8B Missense_Mutation p.E514Q 0.18 tolerated(1) benign(0.002) TCGA-33-6737-01 12 10786662 10786662 G A STYK1 Silent p.L38L 0.30 TCGA-33-6737-01 12 109724503 109724503 G A FOXN4 Missense_Mutation p.P215S 0.20 deleterious(0) probably_damaging(0.983) TCGA-33-6737-01 12 111066671 111066671 C T TCTN1 Missense_Mutation p.S191L 0.34 tolerated(0.07) benign(0.03) TCGA-33-6737-01 12 112617177 112617177 C G HECTD4 Missense_Mutation p.R3525T 0.22 benign(0.01) TCGA-33-6737-01 12 113325651 113325651 G A RPH3A Missense_Mutation p.E496K 0.12 deleterious(0.03) probably_damaging(0.998) TCGA-33-6737-01 12 113617062 113617062 G T DDX54 Missense_Mutation p.F150L 0.25 deleterious(0) probably_damaging(1) TCGA-33-6737-01 12 113770684 113770684 C G SLC8B1 5'UTR 0.26 TCGA-33-6737-01 12 115110029 115110029 C T TBX3 Missense_Mutation p.A617T 0.36 tolerated(0.09) benign(0.002) TCGA-33-6737-01 12 120660757 120660757 C T PXN Missense_Mutation p.M134I 0.23 tolerated(0.06) benign(0.034) TCGA-33-6737-01 12 122958049 122958049 C G ZCCHC8 Missense_Mutation p.E707Q 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.598) TCGA-33-6737-01 12 123687559 123687559 G A MPHOSPH9 Missense_Mutation p.P313S 0.31 tolerated(0.4) benign(0.076) TCGA-33-6737-01 12 21919488 21919488 C T KCNJ8 Missense_Mutation p.M148I 0.37 tolerated(0.76) benign(0.001) TCGA-33-6737-01 12 25259900 25259900 C T LRMP Missense_Mutation p.S391F 0.29 deleterious(0.01) benign(0.097) TCGA-33-6737-01 12 29670466 29670466 G T TMTC1 Missense_Mutation p.P688H 0.20 tolerated(0.1) possibly_damaging(0.893) TCGA-33-6737-01 12 2970476 2970476 G C FOXM1 Missense_Mutation p.L457V 0.33 tolerated(0.11) benign(0) TCGA-33-6737-01 12 29904607 29904607 G T TMTC1 Silent p.S310S 0.26 TCGA-33-6737-01 12 29904660 29904660 G T TMTC1 Missense_Mutation p.P293T 0.30 tolerated(0.09) possibly_damaging(0.743) TCGA-33-6737-01 12 31604942 31604942 C A DENND5B Missense_Mutation p.V521F 0.37 deleterious(0) probably_damaging(0.991) TCGA-33-6737-01 12 39752079 39752079 C G KIF21A Missense_Mutation p.K372N 0.28 deleterious(0) probably_damaging(0.998) TCGA-33-6737-01 12 40618961 40618961 G A LRRK2 Missense_Mutation p.E10K 0.24 deleterious_low_confidence(0.01) benign(0.154) TCGA-33-6737-01 12 49087619 49087619 G C CCNT1 Missense_Mutation p.L460V 0.27 deleterious(0.02) benign(0.103) TCGA-33-6737-01 12 49360170 49360170 C A WNT10B Missense_Mutation p.G293V 0.27 deleterious(0.02) probably_damaging(1) TCGA-33-6737-01 12 52863615 52863615 C A KRT6C Missense_Mutation p.K421N 0.20 deleterious(0.02) probably_damaging(0.988) TCGA-33-6737-01 12 53170983 53170983 G T KRT76 Missense_Mutation p.S31R 0.35 deleterious(0.02) unknown(0) TCGA-33-6737-01 12 53589169 53589169 C T ITGB7 Missense_Mutation p.D384N 0.20 tolerated(0.27) benign(0.048) TCGA-33-6737-01 12 53818661 53818661 C G AMHR2 Missense_Mutation p.S134C 0.23 tolerated(0.18) benign(0.009) TCGA-33-6737-01 12 54676268 54676268 G C HNRNPA1 Missense_Mutation p.R194T 0.16 deleterious(0.01) benign(0.035) TCGA-33-6737-01 12 55794865 55794865 A G OR6C65 Missense_Mutation p.I185V 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.728) TCGA-33-6737-01 12 57857555 57857555 C A GLI1 Silent p.A27A 0.33 TCGA-33-6737-01 12 58350738 58350738 A G XRCC6BP1 3'UTR 0.31 TCGA-33-6737-01 12 6103190 6103190 G C VWF Missense_Mutation p.L2146V 0.15 tolerated(0.85) benign(0.02) TCGA-33-6737-01 12 6965209 6965209 G A USP5 Silent p.E111E 0.27 TCGA-33-6737-01 12 70981033 70981033 G T PTPRB Missense_Mutation p.L689I 0.16 tolerated(0.25) benign(0.018) TCGA-33-6737-01 12 72425478 72425478 C A TPH2 3'UTR 0.32 TCGA-33-6737-01 12 7585036 7585036 C T CD163L1 Missense_Mutation p.E248K 0.16 tolerated(0.61) benign(0.303) TCGA-33-6737-01 12 78225363 78225364 - T NAV3 Frame_Shift_Ins p.L42Ffs*5 0.23 TCGA-33-6737-01 12 78362332 78362332 G A NAV3 Missense_Mutation p.G174E 0.24 deleterious(0) probably_damaging(0.931) TCGA-33-6737-01 12 7982360 7982360 A T SLC2A14 Splice_Site p.X194_splice 0.27 TCGA-33-6737-01 12 80658975 80658975 C G OTOGL Missense_Mutation p.Q728E 0.07 tolerated(0.11) benign(0.113) TCGA-33-6737-01 12 81101810 81101810 G A MYF6 Silent p.R104R 0.32 TCGA-33-6737-01 12 86199572 86199572 C T RASSF9 Silent p.G72G 0.13 TCGA-33-6737-01 12 9242563 9242563 T C A2M Missense_Mutation p.T885A 0.12 deleterious(0.04) benign(0.002) TCGA-33-6737-01 12 94965215 94965215 C G TMCC3 Missense_Mutation p.R477T 0.24 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-33-6737-01 12 95611648 95611648 G C VEZT Missense_Mutation p.E8Q 0.28 deleterious(0.02) benign(0.157) TCGA-33-6737-01 12 96259141 96259141 G A SNRPF Missense_Mutation p.G57R 0.28 deleterious(0.01) benign(0.25) TCGA-33-6737-01 13 33002142 33002142 G A N4BP2L1 Silent p.P26P 0.54 TCGA-33-6737-01 13 36049686 36049686 G T MAB21L1 Missense_Mutation p.P197H 0.37 deleterious(0.01) probably_damaging(0.928) TCGA-33-6737-01 13 47127780 47127780 G C LRCH1 Missense_Mutation p.L83F 0.33 deleterious(0) probably_damaging(0.96) TCGA-33-6737-01 14 101416223 101416223 C G SNORD114-1 RNA 0.15 TCGA-33-6737-01 14 102478379 102478379 C T DYNC1H1 Silent p.D2262D 0.19 TCGA-33-6737-01 14 103804282 103804282 G A EIF5 Intron 0.20 TCGA-33-6737-01 14 104208264 104208264 G C PPP1R13B Nonsense_Mutation p.S562* 0.35 TCGA-33-6737-01 14 107035121 107035121 G C IGHV5-51 Silent p.L14L 0.11 TCGA-33-6737-01 14 20482684 20482684 G T OR4K14 Silent p.L223L 0.22 TCGA-33-6737-01 14 24040504 24040504 G A JPH4 Missense_Mutation p.P479L 0.27 deleterious(0.01) benign(0.18) TCGA-33-6737-01 14 24724586 24724586 G C TGM1 Silent p.L543L 0.35 TCGA-33-6737-01 14 33293734 33293734 G T AKAP6 Missense_Mutation p.A2239S 0.20 tolerated_low_confidence(0.65) benign(0.003) TCGA-33-6737-01 14 37132112 37132112 C T PAX9 Silent p.F5F 0.28 TCGA-33-6737-01 14 37717107 37717107 C G MIPOL1 Nonsense_Mutation p.S5* 0.28 TCGA-33-6737-01 14 45414864 45414864 C A KLHL28 Missense_Mutation p.V90L 0.30 tolerated(0.09) benign(0.21) TCGA-33-6737-01 14 56138564 56138564 A C KTN1 Missense_Mutation p.K1167T 0.26 deleterious(0) possibly_damaging(0.836) TCGA-33-6737-01 14 58915116 58915116 C T KIAA0586 Missense_Mutation p.S342F 0.31 tolerated(0.07) possibly_damaging(0.6) TCGA-33-6737-01 14 60749451 60749451 G A PPM1A Missense_Mutation p.M83I 0.30 deleterious(0.04) benign(0.006) TCGA-33-6737-01 14 64444689 64444689 C T SYNE2 Missense_Mutation p.H454Y 0.26 possibly_damaging(0.544) TCGA-33-6737-01 14 64676674 64676674 G C SYNE2 Missense_Mutation p.Q6185H 0.33 probably_damaging(0.924) TCGA-33-6737-01 14 71413810 71413810 C A PCNX Nonsense_Mutation p.S111* 0.33 TCGA-33-6737-01 14 75936092 75936092 C T JDP2 Missense_Mutation p.R147C 0.21 deleterious(0.03) benign(0.007) TCGA-33-6737-01 14 79117519 79117519 T C NRXN3 5'UTR 0.45 TCGA-33-6737-01 14 89291028 89291028 C T TTC8 5'UTR 0.27 TCGA-33-6737-01 15 23811409 23811409 C A MKRN3 Silent p.P160P 0.35 TCGA-33-6737-01 15 26825604 26825604 C T GABRB3 Splice_Site p.X182_splice 0.43 TCGA-33-6737-01 15 27772743 27772743 A T GABRG3 Nonsense_Mutation p.R344* 0.38 TCGA-33-6737-01 15 42681211 42681211 G A CAPN3 Missense_Mutation p.E240K 0.46 deleterious(0.03) benign(0.115) TCGA-33-6737-01 15 43262764 43262764 G A UBR1 Missense_Mutation p.H1471Y 0.22 tolerated(0.1) benign(0.001) TCGA-33-6737-01 15 43262791 43262791 G C UBR1 Missense_Mutation p.Q1462E 0.22 tolerated(0.55) benign(0) TCGA-33-6737-01 15 43313514 43313514 G A UBR1 Nonsense_Mutation p.Q967* 0.48 TCGA-33-6737-01 15 52901085 52901085 C G FAM214A Missense_Mutation p.D676H 0.17 deleterious(0.04) benign(0.049) TCGA-33-6737-01 15 56748594 56748594 G T MNS1 Missense_Mutation p.N117K 0.19 deleterious(0) probably_damaging(0.914) TCGA-33-6737-01 15 64010802 64010802 G A HERC1 Nonsense_Mutation p.Q1317* 0.28 TCGA-33-6737-01 15 65273231 65273231 G C SPG21 Missense_Mutation p.L66V 0.23 deleterious(0) probably_damaging(0.942) TCGA-33-6737-01 15 76633489 76633489 G A ISL2 Silent p.L270L 0.50 TCGA-33-6737-01 15 81585375 81585375 C T IL16 Silent p.G633G 0.14 TCGA-33-6737-01 15 83679055 83679055 C T C15orf40 Missense_Mutation p.D58N 0.14 tolerated(0.06) possibly_damaging(0.749) TCGA-33-6737-01 15 84558983 84558983 G C ADAMTSL3 Missense_Mutation p.D399H 0.20 deleterious(0) possibly_damaging(0.907) TCGA-33-6737-01 15 84611357 84611357 G A ADAMTSL3 Silent p.V709V 0.11 TCGA-33-6737-01 15 90334279 90334279 G T ANPEP Missense_Mutation p.D858E 0.19 deleterious(0) possibly_damaging(0.874) TCGA-33-6737-01 16 22143039 22143039 G T VWA3A Missense_Mutation p.D621Y 0.47 deleterious(0) probably_damaging(1) TCGA-33-6737-01 16 2233646 2233646 C A CASKIN1 Splice_Site p.X543_splice 0.43 TCGA-33-6737-01 16 28844802 28844802 C G ATXN2L Missense_Mutation p.F666L 0.50 deleterious(0) probably_damaging(0.969) TCGA-33-6737-01 16 2979631 2979631 C G FLYWCH1 5'UTR 0.46 TCGA-33-6737-01 16 50326585 50326585 A T ADCY7 Splice_Site p.X180_splice 0.43 TCGA-33-6737-01 16 70524265 70524265 C T COG4 Missense_Mutation p.E560K 0.38 deleterious(0) possibly_damaging(0.555) TCGA-33-6737-01 16 71218892 71218893 AG T HYDIN Frame_Shift_Del p.L46Ifs*7 0.35 TCGA-33-6737-01 16 79633671 79633671 G A MAF Silent p.I43I 0.43 TCGA-33-6737-01 16 90161934 90161934 G T TUBB8P7 RNA 0.65 TCGA-33-6737-01 17 10356989 10356989 C G MYH4 Missense_Mutation p.E969Q 0.17 deleterious(0.03) probably_damaging(0.998) TCGA-33-6737-01 17 10399469 10399469 T A MYH1 Missense_Mutation p.D1656V 0.40 deleterious(0) possibly_damaging(0.697) TCGA-33-6737-01 17 12656532 12656532 G A MYOCD Missense_Mutation p.V643M 0.20 tolerated(0.05) benign(0.132) TCGA-33-6737-01 17 18148479 18148479 C G FLII Missense_Mutation p.W1261C 0.19 deleterious(0) probably_damaging(0.999) TCGA-33-6737-01 17 18148904 18148904 C T FLII Missense_Mutation p.D1192N 0.18 tolerated(0.06) probably_damaging(0.997) TCGA-33-6737-01 17 19288704 19288704 C A MFAP4 Missense_Mutation p.G126C 0.35 deleterious(0) probably_damaging(1) TCGA-33-6737-01 17 19288705 19288705 C A MFAP4 Silent p.L125L 0.35 TCGA-33-6737-01 17 27002030 27002030 G T SUPT6H Missense_Mutation p.D130Y 0.04 deleterious(0) unknown(0) TCGA-33-6737-01 17 3195848 3195848 G T OR3A1 Missense_Mutation p.T10K 0.28 deleterious(0) possibly_damaging(0.486) TCGA-33-6737-01 17 37922313 37922313 C A IKZF3 Missense_Mutation p.E420D 0.30 tolerated(0.12) benign(0.029) TCGA-33-6737-01 17 38449707 38449707 G A CDC6 Splice_Site p.X221_splice 0.25 TCGA-33-6737-01 17 38449807 38449807 G A CDC6 Missense_Mutation p.E254K 0.34 tolerated(0.9) benign(0.001) TCGA-33-6737-01 17 38453016 38453016 G A CDC6 Missense_Mutation p.E416K 0.40 tolerated(0.38) benign(0.211) TCGA-33-6737-01 17 40021343 40021343 C T KLHL11 Missense_Mutation p.C94Y 0.33 deleterious(0) probably_damaging(1) TCGA-33-6737-01 17 41143266 41143266 T G RUNDC1 Missense_Mutation p.L459V 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-33-6737-01 17 46214549 46214549 C G SKAP1 Intron 0.26 TCGA-33-6737-01 17 48266583 48266583 G A COL1A1 Silent p.V961V 0.23 TCGA-33-6737-01 17 51901867 51901867 C T KIF2B Silent p.H491H 0.40 TCGA-33-6737-01 17 5421084 5421084 C T NLRP1 Missense_Mutation p.E1347K 0.10 tolerated(0.24) benign(0.381) TCGA-33-6737-01 17 57350206 57350206 C T GDPD1 Intron 0.16 TCGA-33-6737-01 17 61432487 61432487 C T TANC2 Missense_Mutation p.S699F 0.13 deleterious(0) probably_damaging(0.921) TCGA-33-6737-01 17 62022729 62022729 G C SCN4A Silent p.L1237L 0.20 TCGA-33-6737-01 17 62758053 62758053 C T hsa-mir-6080 RNA 0.23 TCGA-33-6737-01 17 685696 685696 G T RNMTL1 Silent p.A26A 0.39 TCGA-33-6737-01 17 71394258 71394258 C A SDK2 Missense_Mutation p.Q1090H 0.21 deleterious(0) possibly_damaging(0.782) TCGA-33-6737-01 17 73658595 73658595 G T RECQL5 Missense_Mutation p.F245L 0.15 deleterious(0) probably_damaging(0.95) TCGA-33-6737-01 17 7577088 7577088 T G TP53 Missense_Mutation p.T284P 0.16 deleterious(0) probably_damaging(0.97) TCGA-33-6737-01 17 7579355 7579355 A T TP53 Missense_Mutation p.L111Q 0.32 deleterious(0) probably_damaging(0.998) TCGA-33-6737-01 17 7612580 7612580 C T EFNB3 Silent p.L237L 0.29 TCGA-33-6737-01 17 7643162 7643162 G T DNAH2 Nonsense_Mutation p.E428* 0.13 TCGA-33-6737-01 17 76967757 76967757 C A LGALS3BP Silent p.S553S 0.28 TCGA-33-6737-01 17 77984329 77984330 - A TBC1D16 Frame_Shift_Ins p.K137* 0.27 TCGA-33-6737-01 17 79089888 79089888 G A BAIAP2 Intron 0.38 TCGA-33-6737-01 17 9066153 9066153 C T NTN1 Missense_Mutation p.R348W 0.38 deleterious(0) probably_damaging(0.971) TCGA-33-6737-01 18 14105322 14105322 C A ZNF519 Missense_Mutation p.C406F 0.26 deleterious(0) probably_damaging(0.995) TCGA-33-6737-01 18 14780016 14780016 C A ANKRD30B Missense_Mutation p.S493Y 0.14 tolerated_low_confidence(0.15) possibly_damaging(0.862) TCGA-33-6737-01 18 42643668 42643668 G T SETBP1 3'UTR 0.35 TCGA-33-6737-01 18 48584787 48584787 C T SMAD4 Nonsense_Mutation p.Q289* 0.40 TCGA-33-6737-01 18 54423878 54423878 A T WDR7 Missense_Mutation p.D685V 0.49 deleterious(0) probably_damaging(0.983) TCGA-33-6737-01 18 59925844 59925844 G C KIAA1468 Missense_Mutation p.E713Q 0.47 deleterious(0.01) probably_damaging(0.988) TCGA-33-6737-01 19 11130342 11130342 G A SMARCA4 Missense_Mutation p.E861K 0.19 probably_damaging(0.999) TCGA-33-6737-01 19 14518791 14518791 C A CD97 Silent p.T816T 0.21 TCGA-33-6737-01 19 18271322 18271322 G T PIK3R2 Missense_Mutation p.D122Y 0.12 deleterious(0) possibly_damaging(0.594) TCGA-33-6737-01 19 22362697 22362697 C A ZNF676 3'UTR 0.47 TCGA-33-6737-01 19 2413846 2413846 C T TMPRSS9 Missense_Mutation p.A434V 0.45 tolerated(0.39) benign(0.003) TCGA-33-6737-01 19 38713015 38713015 G T DPF1 Missense_Mutation p.P121T 0.56 tolerated(0.52) benign(0.333) TCGA-33-6737-01 19 40730462 40730462 C A CNTD2 Missense_Mutation p.R149L 0.65 tolerated(0.09) benign(0.328) TCGA-33-6737-01 19 43430769 43430769 G T PSG7 Missense_Mutation p.T270N 0.62 tolerated(0.19) possibly_damaging(0.66) TCGA-33-6737-01 19 43859925 43859925 G T CD177 3'UTR 0.23 TCGA-33-6737-01 19 44169569 44169569 G C PLAUR Nonsense_Mutation p.S70* 0.64 TCGA-33-6737-01 19 48386955 48386955 G T SULT2A1 Nonsense_Mutation p.S75* 0.69 TCGA-33-6737-01 19 48654549 48654549 C G LIG1 Missense_Mutation p.E172Q 0.15 tolerated(0.23) benign(0.002) TCGA-33-6737-01 19 49392767 49392767 C G TULP2 Missense_Mutation p.K212N 0.59 tolerated(0.11) benign(0.01) TCGA-33-6737-01 19 49814440 49814440 C T SLC6A16 Silent p.R55R 0.61 TCGA-33-6737-01 19 50905612 50905612 A T POLD1 Missense_Mutation p.N247I 0.56 deleterious(0) probably_damaging(0.982) TCGA-33-6737-01 19 51471362 51471362 G T KLK6 5'UTR 0.51 TCGA-33-6737-01 19 53678738 53678738 C A ZNF665 Missense_Mutation p.R34S 0.67 deleterious(0) benign(0.109) TCGA-33-6737-01 19 53855459 53855459 G C ZNF845 Missense_Mutation p.E511Q 0.64 tolerated(0.55) possibly_damaging(0.824) TCGA-33-6737-01 19 54418653 54418653 C G CACNG7 Silent p.V106V 0.61 TCGA-33-6737-01 19 56089972 56089972 G C ZNF579 Nonsense_Mutation p.S345* 0.74 TCGA-33-6737-01 19 56090271 56090271 G C ZNF579 Silent p.L245L 0.71 TCGA-33-6737-01 19 58190226 58190226 G A ZSCAN4 Missense_Mutation p.E419K 0.63 tolerated(0.15) benign(0.001) TCGA-33-6737-01 19 58565154 58565154 C A ZSCAN1 Missense_Mutation p.P321Q 0.62 tolerated(0.26) probably_damaging(0.912) TCGA-33-6737-01 19 58967450 58967450 G A ZNF324B Missense_Mutation p.R380H 0.04 tolerated(0.56) probably_damaging(0.991) TCGA-33-6737-01 19 59068153 59068153 C - UBE2M Frame_Shift_Del p.G83Afs*11 0.37 TCGA-33-6737-01 19 59073609 59073609 G A MZF1 Missense_Mutation p.R679W 0.09 deleterious(0) probably_damaging(0.998) TCGA-33-6737-01 19 7585886 7585886 C T ZNF358 3'UTR 0.48 TCGA-33-6737-01 19 7620514 7620514 A G PNPLA6 Silent p.V996V 0.29 TCGA-33-6737-01 19 8186173 8186173 C G FBN3 Missense_Mutation p.E1060D 0.39 deleterious(0.03) benign(0.021) TCGA-33-6737-01 19 8976368 8976368 C A MUC16 Missense_Mutation p.G14154C 0.37 probably_damaging(0.996) TCGA-33-6737-01 19 8976594 8976594 G A MUC16 Silent p.L14128L 0.30 TCGA-33-6737-01 19 9067184 9067184 G T MUC16 Missense_Mutation p.D6754E 0.45 unknown(0) TCGA-33-6737-01 1 103463882 103463882 C G COL11A1 Missense_Mutation p.G727A 0.34 unknown(0) TCGA-33-6737-01 1 107937858 107937858 C G NTNG1 Missense_Mutation p.P324A 0.39 tolerated(0.16) benign(0.026) TCGA-33-6737-01 1 117561160 117561160 G A CD101 Silent p.L665L 0.33 TCGA-33-6737-01 1 117944986 117944986 A G MAN1A2 Missense_Mutation p.I161V 0.39 tolerated(0.72) benign(0) TCGA-33-6737-01 1 12919947 12919947 G A PRAMEF2 Silent p.K229K 0.11 TCGA-33-6737-01 1 12952944 12952944 C G PRAMEF10 Missense_Mutation p.E410Q 0.25 tolerated(0.06) possibly_damaging(0.46) TCGA-33-6737-01 1 144931531 144931531 G C PDE4DIP Intron 0.09 TCGA-33-6737-01 1 146465922 146465922 A G NBPF12 Missense_Mutation p.Q3266R 0.17 benign(0.361) TCGA-33-6737-01 1 150131509 150131509 C T PLEKHO1 Missense_Mutation p.R341W 0.30 deleterious(0.03) benign(0.001) TCGA-33-6737-01 1 150239862 150239862 G A APH1A Silent p.F125F 0.23 TCGA-33-6737-01 1 152081138 152081138 C G TCHH Missense_Mutation p.E1519Q 0.29 unknown(0) TCGA-33-6737-01 1 152282605 152282605 G T FLG Missense_Mutation p.T1586K 0.29 possibly_damaging(0.728) TCGA-33-6737-01 1 152882380 152882380 A T IVL Missense_Mutation p.Q36L 0.31 deleterious_low_confidence(0) unknown(0) TCGA-33-6737-01 1 153431478 153431478 A T S100A7 Silent p.T4T 0.26 TCGA-33-6737-01 1 153935192 153935192 G A SLC39A1 5'UTR 0.19 TCGA-33-6737-01 1 153994764 153994764 C G NUP210L Missense_Mutation p.A1452P 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-33-6737-01 1 155003036 155003036 G A DCST2 Silent p.A297A 0.17 TCGA-33-6737-01 1 155003037 155003037 G A DCST2 Missense_Mutation p.A297V 0.17 deleterious(0) possibly_damaging(0.821) TCGA-33-6737-01 1 155385650 155385650 C G ASH1L Missense_Mutation p.E1965Q 0.19 tolerated_low_confidence(0.17) benign(0.19) TCGA-33-6737-01 1 155657867 155657867 C T YY1AP1 Missense_Mutation p.R130Q 0.37 deleterious_low_confidence(0.02) benign(0.007) TCGA-33-6737-01 1 156347189 156347189 C T RHBG Silent p.L95L 0.35 TCGA-33-6737-01 1 156552193 156552193 C T TTC24 Missense_Mutation p.R293W 0.51 deleterious(0.02) possibly_damaging(0.863) TCGA-33-6737-01 1 158064983 158064983 G T KIRREL 3'UTR 0.29 TCGA-33-6737-01 1 159273818 159273818 C T FCER1A Silent p.V59V 0.16 TCGA-33-6737-01 1 161954800 161954800 G T OLFML2B Intron 0.42 TCGA-33-6737-01 1 167844384 167844384 C T ADCY10 Missense_Mutation p.D483N 0.17 tolerated(0.97) benign(0.002) TCGA-33-6737-01 1 169505854 169505854 G C F5 Missense_Mutation p.R1621G 0.14 deleterious(0) probably_damaging(0.99) TCGA-33-6737-01 1 169699685 169699685 G T SELE Missense_Mutation p.S201R 0.34 deleterious(0.02) possibly_damaging(0.9) TCGA-33-6737-01 1 175293559 175293559 G T TNR Missense_Mutation p.A1297E 0.25 deleterious(0) probably_damaging(1) TCGA-33-6737-01 1 17567205 17567205 C A PADI1 Missense_Mutation p.Q570K 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-33-6737-01 1 183192282 183192282 G T LAMC2 Missense_Mutation p.G259V 0.27 deleterious(0) probably_damaging(1) TCGA-33-6737-01 1 198687416 198687416 A G PTPRC Silent p.T548T 0.36 TCGA-33-6737-01 1 201027567 201027567 C T CACNA1S Missense_Mutation p.S1193N 0.26 deleterious(0) probably_damaging(0.976) TCGA-33-6737-01 1 20976998 20976998 G A PINK1 Silent p.K520K 0.44 TCGA-33-6737-01 1 212515550 212515550 G C PPP2R5A Missense_Mutation p.L167F 0.32 deleterious(0) probably_damaging(0.97) TCGA-33-6737-01 1 215821941 215821941 G A USH2A Silent p.I4837I 0.36 TCGA-33-6737-01 1 215916599 215916599 A G USH2A Missense_Mutation p.V3823A 0.21 benign(0.008) TCGA-33-6737-01 1 218480911 218480911 G T RRP15 Missense_Mutation p.L214F 0.15 deleterious(0) probably_damaging(0.993) TCGA-33-6737-01 1 220091807 220091807 G A SLC30A10 Silent p.L250L 0.18 TCGA-33-6737-01 1 232650395 232650395 G T SIPA1L2 Missense_Mutation p.P231T 0.34 tolerated(0.47) benign(0.362) TCGA-33-6737-01 1 23693646 23693646 C G ZNF436 Missense_Mutation p.E17Q 0.13 deleterious(0.04) benign(0.213) TCGA-33-6737-01 1 237777478 237777478 C A RYR2 Missense_Mutation p.Q1684K 0.17 probably_damaging(0.995) TCGA-33-6737-01 1 240072470 240072470 C G CHRM3 Nonsense_Mutation p.Y573* 0.20 TCGA-33-6737-01 1 247655152 247655152 G C OR2W5 RNA 0.36 TCGA-33-6737-01 1 24766703 24766703 C T NIPAL3 Silent p.L45L 0.31 TCGA-33-6737-01 1 247769620 247769620 C A OR2G3 Missense_Mutation p.L245I 0.49 deleterious(0.04) possibly_damaging(0.497) TCGA-33-6737-01 1 247978591 247978591 C A OR14A16 Missense_Mutation p.W147C 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-33-6737-01 1 248551196 248551196 C A OR2T6 Missense_Mutation p.A96D 0.33 deleterious(0.01) benign(0.272) TCGA-33-6737-01 1 248551197 248551197 C A OR2T6 Silent p.A96A 0.33 TCGA-33-6737-01 1 28081796 28081796 G C FAM76A Missense_Mutation p.K264N 0.26 deleterious(0) probably_damaging(0.999) TCGA-33-6737-01 1 32165448 32165448 G A COL16A1 Missense_Mutation p.R78C 0.14 unknown(0) TCGA-33-6737-01 1 39878590 39878590 G A KIAA0754 Missense_Mutation p.V749I 0.31 unknown(0) TCGA-33-6737-01 1 40723960 40723960 C G ZMPSTE24 Missense_Mutation p.S6W 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.461) TCGA-33-6737-01 1 43228017 43228017 C G LEPRE1 Missense_Mutation p.D199H 0.15 deleterious(0) probably_damaging(0.998) TCGA-33-6737-01 1 45292238 45292238 C A PTCH2 Silent p.L966L 0.13 TCGA-33-6737-01 1 52962837 52962837 C T ZCCHC11 Missense_Mutation p.E340K 0.27 tolerated(0.41) probably_damaging(0.98) TCGA-33-6737-01 1 55544314 55544314 G C USP24 Missense_Mutation p.A2404G 0.15 deleterious(0.01) possibly_damaging(0.584) TCGA-33-6737-01 1 60373569 60373569 C T CYP2J2 Missense_Mutation p.E298K 0.28 deleterious(0.04) benign(0.443) TCGA-33-6737-01 1 6202587 6202587 G A CHD5 Missense_Mutation p.L708F 0.28 deleterious(0) probably_damaging(0.995) TCGA-33-6737-01 1 65120429 65120429 A C CACHD1 Silent p.I524I 0.18 TCGA-33-6737-01 1 65270690 65270690 G C RAVER2 Missense_Mutation p.G425A 0.39 deleterious(0.01) probably_damaging(0.995) TCGA-33-6737-01 1 79107177 79107177 A T IFI44L Missense_Mutation p.N403Y 0.28 deleterious(0) probably_damaging(1) TCGA-33-6737-01 1 91405187 91405187 G C ZNF644 Missense_Mutation p.S575C 0.25 deleterious(0.03) possibly_damaging(0.548) TCGA-33-6737-01 1 99771996 99771996 C A LPPR4 Silent p.P574P 0.30 TCGA-33-6737-01 20 1617104 1617104 G T SIRPG Missense_Mutation p.P160T 0.29 deleterious(0.05) benign(0.373) TCGA-33-6737-01 20 19956105 19956105 C T RIN2 Missense_Mutation p.S528F 0.13 deleterious(0.01) possibly_damaging(0.807) TCGA-33-6737-01 20 21493106 21493106 C A NKX2-2 Missense_Mutation p.G93W 0.20 deleterious(0.02) possibly_damaging(0.739) TCGA-33-6737-01 20 26084307 26084307 C T NCOR1P1 Intron 0.31 TCGA-33-6737-01 20 33593507 33593507 C G TRPC4AP Missense_Mutation p.D643H 0.34 deleterious(0.03) probably_damaging(0.99) TCGA-33-6737-01 20 33969754 33969754 C A UQCC1 Missense_Mutation p.M100I 0.29 tolerated(0.12) benign(0.082) TCGA-33-6737-01 20 36766704 36766704 G A TGM2 Missense_Mutation p.R476W 0.15 deleterious(0) probably_damaging(0.946) TCGA-33-6737-01 20 37126041 37126041 G A RALGAPB Silent p.L145L 0.15 TCGA-33-6737-01 20 3732708 3732708 G C HSPA12B Missense_Mutation p.E652D 0.18 deleterious(0.01) benign(0.395) TCGA-33-6737-01 20 39802170 39802170 T C PLCG1 Silent p.F1130F 0.23 TCGA-33-6737-01 20 40713430 40713430 T C PTPRT Missense_Mutation p.Y1343C 0.21 deleterious(0.05) possibly_damaging(0.552) TCGA-33-6737-01 20 46295089 46295089 G T SULF2 Missense_Mutation p.Q574K 0.31 tolerated(0.87) benign(0.027) TCGA-33-6737-01 20 48259098 48259098 C T B4GALT5 Silent p.R171R 0.26 TCGA-33-6737-01 20 49552786 49552786 C G DPM1 Missense_Mutation p.E193Q 0.41 tolerated(0.15) benign(0.099) TCGA-33-6737-01 20 52570115 52570115 C T BCAS1 Silent p.Q512Q 0.17 TCGA-33-6737-01 20 58318184 58318184 G T PHACTR3 Silent p.P47P 0.15 TCGA-33-6737-01 20 61939981 61939981 C T COL20A1 Missense_Mutation p.T288M 0.25 deleterious(0) probably_damaging(0.999) TCGA-33-6737-01 21 18977217 18977217 T A BTG3 Missense_Mutation p.E91V 0.47 deleterious(0) probably_damaging(0.997) TCGA-33-6737-01 21 18977219 18977219 C A BTG3 Missense_Mutation p.K90N 0.48 deleterious(0.01) possibly_damaging(0.681) TCGA-33-6737-01 21 31015280 31015280 C G GRIK1 Missense_Mutation p.A322P 0.48 deleterious(0) probably_damaging(0.991) TCGA-33-6737-01 21 35514721 35514721 G T MRPS6 Missense_Mutation p.D67Y 0.52 deleterious(0) probably_damaging(0.988) TCGA-33-6737-01 21 41414427 41414427 C A DSCAM Nonsense_Mutation p.E1853* 0.53 TCGA-33-6737-01 21 43256623 43256623 C A PRDM15 Missense_Mutation p.K745N 0.51 deleterious(0) probably_damaging(1) TCGA-33-6737-01 21 45547881 45547881 G A PWP2 Missense_Mutation p.D737N 0.45 deleterious(0.03) possibly_damaging(0.751) TCGA-33-6737-01 21 46012054 46012054 G T KRTAP10-6 Silent p.P104P 0.33 TCGA-33-6737-01 21 46074512 46074512 G C KRTAP12-4 Missense_Mutation p.S7C 0.58 deleterious(0) probably_damaging(0.938) TCGA-33-6737-01 21 47952109 47952109 G C DIP2A Missense_Mutation p.E422Q 0.41 tolerated(0.16) probably_damaging(0.91) TCGA-33-6737-01 22 20079140 20079140 G A DGCR8 Missense_Mutation p.A497T 0.53 tolerated(0.05) benign(0.445) TCGA-33-6737-01 22 20100675 20100675 G A TRMT2A Silent p.L505L 0.42 TCGA-33-6737-01 22 22890745 22890745 C G PRAME Missense_Mutation p.S425T 0.12 deleterious(0.02) benign(0.217) TCGA-33-6737-01 22 26769434 26769434 G A SEZ6L Missense_Mutation p.E938K 0.39 tolerated(0.11) benign(0.034) TCGA-33-6737-01 22 32756478 32756478 G T RFPL3 Missense_Mutation p.G205W 0.40 deleterious(0) probably_damaging(1) TCGA-33-6737-01 22 46932349 46932349 C G CELSR1 Missense_Mutation p.R240T 0.38 tolerated(0.2) benign(0.004) TCGA-33-6737-01 2 102625010 102625010 C A IL1R2 5'UTR 0.13 TCGA-33-6737-01 2 108924925 108924925 G C SULT1C2 3'UTR 0.16 TCGA-33-6737-01 2 109109244 109109244 G T GCC2 Missense_Mutation p.R1482I 0.30 deleterious(0.04) possibly_damaging(0.694) TCGA-33-6737-01 2 11798693 11798693 G T NTSR2 Missense_Mutation p.P382H 0.10 tolerated(0.06) benign(0.004) TCGA-33-6737-01 2 130872872 130872872 C T POTEF Missense_Mutation p.G184E 0.13 tolerated_low_confidence(0.06) possibly_damaging(0.866) TCGA-33-6737-01 2 131520908 131520908 C G AMER3 Silent p.A421A 0.18 TCGA-33-6737-01 2 136548373 136548373 C G LCT Missense_Mutation p.R1730S 0.18 deleterious(0) probably_damaging(1) TCGA-33-6737-01 2 141598560 141598560 C T LRP1B Missense_Mutation p.D1681N 0.07 possibly_damaging(0.539) TCGA-33-6737-01 2 159522953 159522953 G A PKP4 Missense_Mutation p.R869Q 0.15 deleterious(0) probably_damaging(0.982) TCGA-33-6737-01 2 163695066 163695066 T A KCNH7 5'UTR 0.22 TCGA-33-6737-01 2 166908383 166908383 C T SCN1A Missense_Mutation p.M270I 0.14 deleterious(0) probably_damaging(0.985) TCGA-33-6737-01 2 168106459 168106459 G C XIRP2 Missense_Mutation p.V2853L 0.17 benign(0.217) TCGA-33-6737-01 2 172582502 172582502 C G DYNC1I2 Missense_Mutation p.D227E 0.15 tolerated(0.17) benign(0.005) TCGA-33-6737-01 2 172669850 172669850 C A SLC25A12 Missense_Mutation p.R390S 0.16 tolerated(0.05) benign(0.393) TCGA-33-6737-01 2 172965551 172965551 G T DLX2 Nonsense_Mutation p.S236* 0.39 TCGA-33-6737-01 2 173338886 173338886 G C ITGA6 Missense_Mutation p.K293N 0.29 deleterious(0) possibly_damaging(0.691) TCGA-33-6737-01 2 17998202 17998202 C A MSGN1 Silent p.T139T 0.17 TCGA-33-6737-01 2 189867042 189867042 G T COL3A1 Missense_Mutation p.G804C 0.39 unknown(0) TCGA-33-6737-01 2 196788444 196788444 C A DNAH7 Missense_Mutation p.V1234L 0.17 tolerated(0.5) benign(0.021) TCGA-33-6737-01 2 21250815 21250815 G A APOB Missense_Mutation p.A651V 0.15 benign(0.007) TCGA-33-6737-01 2 215851337 215851337 G C ABCA12 Silent p.L1364L 0.17 TCGA-33-6737-01 2 219532650 219532650 C T RNF25 Silent p.L114L 0.44 TCGA-33-6737-01 2 220047133 220047133 C T FAM134A Nonsense_Mutation p.Q472* 0.43 TCGA-33-6737-01 2 225449700 225449700 G A CUL3 Silent p.G9G 0.22 TCGA-33-6737-01 2 241988480 241988480 G A SNED1 Missense_Mutation p.D516N 0.19 tolerated(0.39) possibly_damaging(0.638) TCGA-33-6737-01 2 242075391 242075391 G T PASK Missense_Mutation p.Q401K 0.36 tolerated(0.19) benign(0.164) TCGA-33-6737-01 2 25463181 25463181 C T DNMT3A Missense_Mutation p.R771Q 0.05 deleterious(0.02) probably_damaging(0.993) TCGA-33-6737-01 2 25965964 25965964 G A ASXL2 Missense_Mutation p.S1081L 0.16 tolerated(0.07) possibly_damaging(0.613) TCGA-33-6737-01 2 26534385 26534385 C T GPR113 Silent p.Q737Q 0.14 TCGA-33-6737-01 2 26706386 26706386 C T OTOF Missense_Mutation p.G446S 0.17 deleterious(0.04) probably_damaging(1) TCGA-33-6737-01 2 28754978 28754978 C A PLB1 Missense_Mutation p.L158I 0.12 tolerated(0.59) benign(0.298) TCGA-33-6737-01 2 33623585 33623585 T C LTBP1 Silent p.N1713N 0.33 TCGA-33-6737-01 2 54014354 54014354 G A ERLEC1 Missense_Mutation p.E3K 0.13 tolerated_low_confidence(0.16) unknown(0) TCGA-33-6737-01 2 63631244 63631244 G C WDPCP Missense_Mutation p.I458M 0.20 tolerated(0.06) probably_damaging(0.962) TCGA-33-6737-01 2 64112851 64112851 T A UGP2 Nonsense_Mutation p.L235* 0.22 TCGA-33-6737-01 2 7018277 7018277 G A RSAD2 Missense_Mutation p.G116S 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-33-6737-01 2 70486688 70486688 C G PCYOX1 Silent p.V103V 0.22 TCGA-33-6737-01 2 71780187 71780187 C G DYSF Nonsense_Mutation p.S618* 0.28 TCGA-33-6737-01 2 89976327 89976327 C G IGKV2D-30 Silent p.G66G 0.34 TCGA-33-6737-01 3 100000667 100000667 C T TBC1D23 Missense_Mutation p.H83Y 0.17 deleterious(0) probably_damaging(0.939) TCGA-33-6737-01 3 101574241 101574241 G A NFKBIZ Silent p.A531A 0.35 TCGA-33-6737-01 3 108409675 108409675 G A DZIP3 Silent p.T1186T 0.24 TCGA-33-6737-01 3 108723703 108723703 C G MORC1 Missense_Mutation p.W682C 0.16 tolerated_low_confidence(0.21) benign(0.124) TCGA-33-6737-01 3 121414880 121414880 C A GOLGB1 Missense_Mutation p.R1497L 0.16 probably_damaging(1) TCGA-33-6737-01 3 125725817 125725817 G A SLC41A3 Intron 0.38 TCGA-33-6737-01 3 126747835 126747835 G C PLXNA1 Splice_Site p.X1557_splice 0.23 TCGA-33-6737-01 3 130159395 130159395 A C COL6A5 Silent p.P2071P 0.19 TCGA-33-6737-01 3 13896073 13896073 C A WNT7A Missense_Mutation p.A176S 0.18 tolerated(0.12) benign(0.113) TCGA-33-6737-01 3 140998308 140998308 A T ACPL2 Silent p.T109T 0.35 TCGA-33-6737-01 3 157815774 157815774 G C SHOX2 3'UTR 0.37 TCGA-33-6737-01 3 164907140 164907140 C T SLITRK3 Silent p.R493R 0.09 TCGA-33-6737-01 3 169487114 169487114 G T ACTRT3 Missense_Mutation p.F65L 0.32 tolerated(0.08) benign(0) TCGA-33-6737-01 3 179448430 179448430 C T USP13 Missense_Mutation p.S396L 0.34 deleterious(0) possibly_damaging(0.506) TCGA-33-6737-01 3 182871557 182871557 C G LAMP3 Missense_Mutation p.K224N 0.20 deleterious(0.01) possibly_damaging(0.889) TCGA-33-6737-01 3 196236461 196236461 C T SMCO1 Missense_Mutation p.E44K 0.30 tolerated(0.05) possibly_damaging(0.491) TCGA-33-6737-01 3 31677540 31677540 C T STT3B Missense_Mutation p.S822F 0.20 deleterious_low_confidence(0.01) benign(0.075) TCGA-33-6737-01 3 38888109 38888109 C T SCN11A 3'UTR 0.61 TCGA-33-6737-01 3 46874683 46874683 T G PRSS42 Missense_Mutation p.S129R 0.11 deleterious(0.03) benign(0.179) TCGA-33-6737-01 3 48605026 48605026 T A COL7A1 Missense_Mutation p.E2676V 0.27 probably_damaging(0.997) TCGA-33-6737-01 3 50255117 50255117 A - SLC38A3 RNA 0.18 TCGA-33-6737-01 3 53914030 53914030 C T ACTR8 Missense_Mutation p.R77Q 0.27 deleterious(0.01) probably_damaging(0.987) TCGA-33-6737-01 3 56651142 56651142 G A CCDC66 Missense_Mutation p.D616N 0.28 tolerated(0.13) benign(0.222) TCGA-33-6737-01 3 62388831 62388831 G A CADPS Silent p.I1269I 0.24 TCGA-33-6737-01 3 63601157 63601157 A G SYNPR Silent p.%3D 0.15 TCGA-33-6737-01 3 64184592 64184592 C A PRICKLE2 Silent p.V4V 0.16 TCGA-33-6737-01 3 98073316 98073316 C G OR5K4 Missense_Mutation p.Q207E 0.12 deleterious(0.04) benign(0.02) TCGA-33-6737-01 3 98251486 98251486 C A GPR15 Silent p.T203T 0.32 TCGA-33-6737-01 3 98251494 98251494 T G GPR15 Missense_Mutation p.V206G 0.32 deleterious(0.01) benign(0.243) TCGA-33-6737-01 4 110915914 110915914 G A EGF Silent p.R961R 0.19 TCGA-33-6737-01 4 123113471 123113471 G T KIAA1109 Missense_Mutation p.G330V 0.24 probably_damaging(1) TCGA-33-6737-01 4 146567233 146567233 G C MMAA Missense_Mutation p.V220L 0.21 deleterious(0) probably_damaging(0.957) TCGA-33-6737-01 4 151752973 151752973 G C LRBA Silent p.L1575L 0.22 TCGA-33-6737-01 4 153896268 153896268 G A FHDC1 Missense_Mutation p.E609K 0.23 tolerated(0.27) benign(0.002) TCGA-33-6737-01 4 160235907 160235907 A T RAPGEF2 Silent p.T119T 0.24 TCGA-33-6737-01 4 166978409 166978409 G T TLL1 Missense_Mutation p.Q598H 0.16 tolerated(0.07) benign(0.01) TCGA-33-6737-01 4 169190038 169190038 G A DDX60 Missense_Mutation p.S918L 0.11 deleterious(0) probably_damaging(1) TCGA-33-6737-01 4 17517048 17517048 G T CLRN2 Missense_Mutation p.E53D 0.19 deleterious(0.01) possibly_damaging(0.571) TCGA-33-6737-01 4 177190264 177190264 G C ASB5 5'UTR 0.16 TCGA-33-6737-01 4 184931924 184931924 C A STOX2 Missense_Mutation p.H645N 0.15 deleterious_low_confidence(0.01) benign(0.135) TCGA-33-6737-01 4 185045395 185045395 G T ENPP6 Missense_Mutation p.P151H 0.20 deleterious(0) probably_damaging(0.984) TCGA-33-6737-01 4 187005962 187005962 G C TLR3 Missense_Mutation p.E884Q 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-33-6737-01 4 187629005 187629005 G C FAT1 Missense_Mutation p.I659M 0.21 benign(0.025) TCGA-33-6737-01 4 23815388 23815388 G A PPARGC1A Missense_Mutation p.S573F 0.27 tolerated_low_confidence(0.65) unknown(0) TCGA-33-6737-01 4 57182826 57182826 C A KIAA1211 Missense_Mutation p.P1053H 0.32 deleterious(0.03) probably_damaging(0.95) TCGA-33-6737-01 4 65188436 65188436 C G TECRL Missense_Mutation p.D136H 0.21 deleterious(0) probably_damaging(1) TCGA-33-6737-01 4 66213899 66213899 C A EPHA5 Missense_Mutation p.W844L 0.14 deleterious(0.02) probably_damaging(0.997) TCGA-33-6737-01 4 69199062 69199062 C G YTHDC1 Missense_Mutation p.D313H 0.27 tolerated(0.15) benign(0.15) TCGA-33-6737-01 4 6995917 6995917 G A TBC1D14 Missense_Mutation p.E284K 0.23 tolerated(0.11) benign(0.033) TCGA-33-6737-01 4 71201956 71201956 G T CABS1 3'UTR 0.10 TCGA-33-6737-01 4 71227819 71227819 A T SMR3A Intron 0.17 TCGA-33-6737-01 4 72897585 72897585 C G NPFFR2 5'UTR 0.29 TCGA-33-6737-01 5 11098820 11098820 G T CTNND2 Missense_Mutation p.P835Q 0.25 deleterious(0) probably_damaging(0.984) TCGA-33-6737-01 5 113822800 113822800 T A KCNN2 Missense_Mutation p.N436K 0.19 deleterious(0.01) possibly_damaging(0.826) TCGA-33-6737-01 5 125930765 125930765 C T ALDH7A1 Silent p.L42L 0.27 TCGA-33-6737-01 5 127638692 127638692 C G FBN2 Missense_Mutation p.E1964Q 0.18 tolerated(0.49) possibly_damaging(0.77) TCGA-33-6737-01 5 131822653 131822653 C G IRF1 Missense_Mutation p.Q119H 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-33-6737-01 5 133534875 133534875 G A PPP2CA Silent p.D253D 0.30 TCGA-33-6737-01 5 135388806 135388806 C G TGFBI Nonsense_Mutation p.S375* 0.17 TCGA-33-6737-01 5 136328224 136328224 C T SPOCK1 Missense_Mutation p.E219K 0.25 tolerated(0.13) possibly_damaging(0.752) TCGA-33-6737-01 5 138994186 138994186 C T UBE2D2 Missense_Mutation p.A35V 0.18 deleterious_low_confidence(0.03) benign(0.321) TCGA-33-6737-01 5 140788511 140788511 A T PCDHGB6 Nonsense_Mutation p.R248* 0.17 TCGA-33-6737-01 5 140958124 140958124 G A DIAPH1 Silent p.I334I 0.23 TCGA-33-6737-01 5 147051264 147051264 C G JAKMIP2 Missense_Mutation p.E36Q 0.30 deleterious(0.04) probably_damaging(0.979) TCGA-33-6737-01 5 150726878 150726878 C T SLC36A2 Silent p.L48L 0.21 TCGA-33-6737-01 5 150907667 150907667 G T FAT2 Missense_Mutation p.L3352I 0.16 benign(0.008) TCGA-33-6737-01 5 158747368 158747368 C A IL12B Missense_Mutation p.V215F 0.19 tolerated(0.15) benign(0.266) TCGA-33-6737-01 5 172513617 172513617 C T CREBRF Silent p.F41F 0.19 TCGA-33-6737-01 5 176943821 176943821 C A DDX41 Nonsense_Mutation p.E15* 0.26 TCGA-33-6737-01 5 180219415 180219415 G A MGAT1 Missense_Mutation p.A186V 0.31 probably_damaging(0.985) TCGA-33-6737-01 5 71739897 71739897 G C ZNF366 Missense_Mutation p.Q641E 0.18 tolerated_low_confidence(0.33) benign(0.01) TCGA-33-6737-01 5 72873704 72873704 A G UTP15 Silent p.V306V 0.17 TCGA-33-6737-01 5 80604814 80604814 G A ZCCHC9 Silent p.L195L 0.19 TCGA-33-6737-01 5 89781457 89781457 G A POLR3G Missense_Mutation p.E25K 0.25 tolerated(0.06) probably_damaging(0.936) TCGA-33-6737-01 6 11105243 11105243 G T ERVFRD-1 Missense_Mutation p.P101T 0.15 tolerated(0.3) benign(0.255) TCGA-33-6737-01 6 111634624 111634624 C T REV3L Silent p.Q2845Q 0.24 TCGA-33-6737-01 6 11185539 11185539 G C NEDD9 Silent p.L787L 0.33 TCGA-33-6737-01 6 112452258 112452258 C A LAMA4 Missense_Mutation p.D1294Y 0.33 deleterious(0) possibly_damaging(0.853) TCGA-33-6737-01 6 112452259 112452259 C A LAMA4 Missense_Mutation p.M1293I 0.33 deleterious(0.01) benign(0.062) TCGA-33-6737-01 6 12124483 12124483 G A HIVEP1 Silent p.Q1485Q 0.12 TCGA-33-6737-01 6 123046281 123046281 G C PKIB Missense_Mutation p.E67Q 0.24 tolerated(0.51) benign(0.006) TCGA-33-6737-01 6 126080736 126080736 G T HEY2 Missense_Mutation p.A268S 0.75 tolerated(0.59) possibly_damaging(0.827) TCGA-33-6737-01 6 130762297 130762297 C A TMEM200A Missense_Mutation p.P244T 0.36 deleterious(0.03) benign(0.162) TCGA-33-6737-01 6 151121854 151121854 G A PLEKHG1 Splice_Site p.X210_splice 0.26 TCGA-33-6737-01 6 153311084 153311084 C T MTRF1L Silent p.L363L 0.19 TCGA-33-6737-01 6 160328255 160328255 G T MAS1 Missense_Mutation p.D90Y 0.22 tolerated(0.14) benign(0.27) TCGA-33-6737-01 6 163899889 163899889 C T QKI Silent p.I121I 0.20 TCGA-33-6737-01 6 165715275 165715275 A T C6orf118 Missense_Mutation p.L179Q 0.12 deleterious(0.01) probably_damaging(0.989) TCGA-33-6737-01 6 167753644 167753644 C A TTLL2 Missense_Mutation p.P86T 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-33-6737-01 6 170594017 170594017 G T DLL1 Silent p.P413P 0.22 TCGA-33-6737-01 6 26199929 26199929 A T HIST1H2BF Missense_Mutation p.Q48L 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.653) TCGA-33-6737-01 6 32138256 32138256 C T AGPAT1 Silent p.T152T 0.34 TCGA-33-6737-01 6 32847094 32847094 C A PPP1R2P1 RNA 0.12 TCGA-33-6737-01 6 34835144 34835144 C T UHRF1BP1 Silent p.L1185L 0.15 TCGA-33-6737-01 6 36260877 36260877 C T PNPLA1 Missense_Mutation p.L160F 0.41 tolerated(0.34) benign(0.059) TCGA-33-6737-01 6 36455032 36455032 C T KCTD20 3'UTR 0.20 TCGA-33-6737-01 6 37138329 37138329 G A PIM1 5'UTR 0.49 TCGA-33-6737-01 6 38813505 38813505 G C DNAH8 Missense_Mutation p.L1450F 0.36 benign(0.02) TCGA-33-6737-01 6 401436 401436 A C IRF4 Missense_Mutation p.H253P 0.33 deleterious(0) probably_damaging(1) TCGA-33-6737-01 6 41545800 41545800 A T FOXP4 Missense_Mutation p.Q94L 0.38 tolerated(0.07) probably_damaging(0.978) TCGA-33-6737-01 6 43114398 43114398 G A PTK7 Missense_Mutation p.E903K 0.15 tolerated(0.15) benign(0.297) TCGA-33-6737-01 6 44150853 44150853 C G CAPN11 Intron 0.31 TCGA-33-6737-01 6 51889423 51889423 C A PKHD1 Missense_Mutation p.A1729S 0.32 tolerated(0.88) benign(0.004) TCGA-33-6737-01 6 54025350 54025350 G T MLIP Nonsense_Mutation p.E263* 0.18 TCGA-33-6737-01 6 56374593 56374593 C A DST Missense_Mutation p.A3664S 0.37 possibly_damaging(0.61) TCGA-33-6737-01 6 56382353 56382353 C A DST Silent p.L3442L 0.11 TCGA-33-6737-01 6 56470023 56470023 C G DST Intron 0.18 TCGA-33-6737-01 6 70589438 70589438 G T COL19A1 5'UTR 0.13 TCGA-33-6737-01 6 79650830 79650830 G C PHIP Missense_Mutation p.I1682M 0.14 tolerated_low_confidence(0.13) benign(0.039) TCGA-33-6737-01 6 83732255 83732255 C T UBE3D Missense_Mutation p.A255T 0.15 deleterious(0.04) benign(0.148) TCGA-33-6737-01 7 113519333 113519333 C A PPP1R3A Missense_Mutation p.S605I 0.13 tolerated(0.16) benign(0.1) TCGA-33-6737-01 7 121738539 121738539 C A AASS Silent p.L540L 0.35 TCGA-33-6737-01 7 133812110 133812110 C A LRGUK 5'UTR 0.25 TCGA-33-6737-01 7 138579246 138579246 G A KIAA1549 Missense_Mutation p.P1292S 0.19 tolerated(1) possibly_damaging(0.876) TCGA-33-6737-01 7 139529251 139529251 C T TBXAS1 Missense_Mutation p.S22L 0.20 tolerated(0.93) benign(0.001) TCGA-33-6737-01 7 140481411 140481411 C A BRAF Missense_Mutation p.G466V 0.26 deleterious(0) probably_damaging(0.936) TCGA-33-6737-01 7 141618739 141618739 C A OR9A4 Missense_Mutation p.L22I 0.30 tolerated(0.1) benign(0.027) TCGA-33-6737-01 7 142482373 142482373 G T PRSS3P2 RNA 0.22 TCGA-33-6737-01 7 143039210 143039210 C G CLCN1 Missense_Mutation p.P591A 0.13 deleterious(0) possibly_damaging(0.878) TCGA-33-6737-01 7 144060783 144060783 C G ARHGEF5 Missense_Mutation p.Q341E 0.39 tolerated(0.06) benign(0.211) TCGA-33-6737-01 7 149502658 149502658 C T SSPO RNA 0.16 TCGA-33-6737-01 7 150417443 150417443 G T GIMAP1 Silent p.L117L 0.24 TCGA-33-6737-01 7 150937237 150937237 G - SMARCD3 Frame_Shift_Del p.T379Rfs*21 0.18 TCGA-33-6737-01 7 151932935 151932935 C T KMT2C Silent p.L912L 0.15 TCGA-33-6737-01 7 154684591 154684591 G T DPP6 3'UTR 0.16 TCGA-33-6737-01 7 154862998 154862998 G A HTR5A-AS1 Nonsense_Mutation p.Q6* 0.19 TCGA-33-6737-01 7 18869172 18869172 G T HDAC9 Splice_Site p.X822_splice 0.31 TCGA-33-6737-01 7 20441706 20441706 G T ITGB8 Missense_Mutation p.K548N 0.31 deleterious(0.02) benign(0.282) TCGA-33-6737-01 7 20441707 20441707 G T ITGB8 Missense_Mutation p.D549Y 0.31 deleterious(0) probably_damaging(1) TCGA-33-6737-01 7 21765525 21765525 G A DNAH11 Missense_Mutation p.D2462N 0.22 probably_damaging(1) TCGA-33-6737-01 7 27142065 27142065 C A HOXA2 Missense_Mutation p.A19S 0.10 deleterious(0) probably_damaging(0.999) TCGA-33-6737-01 7 2946460 2946460 G T CARD11 Missense_Mutation p.P1093T 0.25 tolerated(0.08) benign(0.015) TCGA-33-6737-01 7 32598723 32598723 G C AVL9 Missense_Mutation p.D288H 0.38 tolerated(0.09) possibly_damaging(0.868) TCGA-33-6737-01 7 32909154 32909154 C G KBTBD2 Missense_Mutation p.D559H 0.32 deleterious(0) possibly_damaging(0.687) TCGA-33-6737-01 7 36396527 36396527 T A KIAA0895 Missense_Mutation p.D284V 0.18 deleterious(0) probably_damaging(0.962) TCGA-33-6737-01 7 42005006 42005006 G C GLI3 Missense_Mutation p.P1222R 0.12 tolerated_low_confidence(0.06) benign(0.021) TCGA-33-6737-01 7 48411966 48411966 A T ABCA13 Missense_Mutation p.S3669C 0.18 probably_damaging(0.994) TCGA-33-6737-01 7 55755509 55755509 G T RNU6-389P 3'Flank 0.35 TCGA-33-6737-01 7 86823350 86823350 G A DMTF1 Missense_Mutation p.E654K 0.16 tolerated_low_confidence(0.14) benign(0.099) TCGA-33-6737-01 7 89794038 89794038 C - STEAP1 Frame_Shift_Del p.Q338Sfs*30 0.26 TCGA-33-6737-01 7 90895882 90895882 G T FZD1 Missense_Mutation p.D563Y 0.21 deleterious(0.03) benign(0.039) TCGA-33-6737-01 7 93065311 93065311 G A CALCR Missense_Mutation p.L402F 0.18 tolerated(0.71) probably_damaging(0.999) TCGA-33-6737-01 8 100568799 100568799 A T VPS13B Nonsense_Mutation p.K1648* 0.09 TCGA-33-6737-01 8 10383125 10383125 G A PRSS55 Silent p.L10L 0.21 TCGA-33-6737-01 8 10468421 10468421 C A RP1L1 Nonsense_Mutation p.E1063* 0.47 TCGA-33-6737-01 8 105502956 105502956 A T LRP12 Nonsense_Mutation p.L842* 0.23 TCGA-33-6737-01 8 110497275 110497275 G T PKHD1L1 Missense_Mutation p.E3193D 0.13 tolerated(0.44) benign(0.178) TCGA-33-6737-01 8 113518987 113518987 G A CSMD3 Missense_Mutation p.H1610Y 0.24 tolerated(0.34) probably_damaging(0.985) TCGA-33-6737-01 8 114448937 114448937 G C CSMD3 Silent p.L49L 0.24 TCGA-33-6737-01 8 123964740 123964740 G A ZHX2 Silent p.R330R 0.26 TCGA-33-6737-01 8 124219473 124219473 G A FAM83A Missense_Mutation p.E284K 0.07 tolerated(0.06) possibly_damaging(0.461) TCGA-33-6737-01 8 124408548 124408548 G T ATAD2 Nonsense_Mutation p.S17* 0.14 TCGA-33-6737-01 8 125987858 125987858 C G ZNF572 5'UTR 0.19 TCGA-33-6737-01 8 131130450 131130450 C A ASAP1 Missense_Mutation p.D613Y 0.24 deleterious(0) probably_damaging(0.981) TCGA-33-6737-01 8 143996481 143996481 G C CYP11B2 Missense_Mutation p.I192M 0.15 tolerated(0.17) benign(0.292) TCGA-33-6737-01 8 144681126 144681126 G T TIGD5 Missense_Mutation p.Q351H 0.29 deleterious(0.01) probably_damaging(0.986) TCGA-33-6737-01 8 144681439 144681439 G C TIGD5 Missense_Mutation p.D456H 0.17 deleterious(0.02) possibly_damaging(0.908) TCGA-33-6737-01 8 144681815 144681815 G T TIGD5 Missense_Mutation p.G581V 0.12 tolerated(0.06) possibly_damaging(0.522) TCGA-33-6737-01 8 144682044 144682044 G A TIGD5 3'UTR 0.29 TCGA-33-6737-01 8 145049349 145049349 G A PARP10 3'Flank 0.22 TCGA-33-6737-01 8 145693754 145693754 G T KIFC2 Nonsense_Mutation p.E285* 0.15 TCGA-33-6737-01 8 145736103 145736103 G A MFSD3 Missense_Mutation p.R318K 0.12 tolerated(0.69) benign(0.015) TCGA-33-6737-01 8 25303650 25303650 C G KCTD9 Missense_Mutation p.L55F 0.19 tolerated(0.06) probably_damaging(1) TCGA-33-6737-01 8 25303661 25303661 C T KCTD9 Missense_Mutation p.D52N 0.17 deleterious(0.01) probably_damaging(1) TCGA-33-6737-01 8 2815331 2815331 T A CSMD1 Splice_Site p.X3235_splice 0.56 TCGA-33-6737-01 8 28827693 28827693 C G HMBOX1 Missense_Mutation p.L53V 0.25 deleterious(0) possibly_damaging(0.686) TCGA-33-6737-01 8 30921849 30921849 G T WRN Missense_Mutation p.W85L 0.31 deleterious(0) probably_damaging(1) TCGA-33-6737-01 8 39806779 39806779 C G IDO2 Missense_Mutation p.S45C 0.38 deleterious(0) possibly_damaging(0.605) TCGA-33-6737-01 8 43212080 43212080 G C POTEA RNA 0.33 TCGA-33-6737-01 8 52384806 52384806 G A PXDNL Silent p.V251V 0.23 TCGA-33-6737-01 8 59410849 59410849 T A CYP7A1 Missense_Mutation p.K87M 0.50 tolerated(0.07) possibly_damaging(0.764) TCGA-33-6737-01 8 69021791 69021791 C G PREX2 Missense_Mutation p.Q1027E 0.24 deleterious(0.03) benign(0.02) TCGA-33-6737-01 8 77763549 77763549 C T ZFHX4 Silent p.P1464P 0.25 TCGA-33-6737-01 8 77765673 77765673 T G ZFHX4 Silent p.V2172V 0.45 TCGA-33-6737-01 8 86121488 86121488 G A E2F5 Missense_Mutation p.V243I 0.11 deleterious(0.04) benign(0.078) TCGA-33-6737-01 8 86126952 86126952 C T C8orf59 Intron 0.16 TCGA-33-6737-01 8 94746677 94746677 G A RBM12B Silent p.P654P 0.20 TCGA-33-6737-01 9 104357169 104357169 C G PPP3R2 Missense_Mutation p.C15S 0.40 tolerated(0.37) benign(0.002) TCGA-33-6737-01 9 115421863 115421863 C G KIAA1958 Silent p.L555L 0.33 TCGA-33-6737-01 9 115940912 115940912 G C FKBP15 Nonsense_Mutation p.S695* 0.36 TCGA-33-6737-01 9 116812494 116812494 G C ZNF618 3'UTR 0.39 TCGA-33-6737-01 9 133768899 133768899 G T QRFP Missense_Mutation p.S109R 0.44 deleterious(0.02) possibly_damaging(0.765) TCGA-33-6737-01 9 135866411 135866411 C T GFI1B Missense_Mutation p.R323C 0.44 deleterious(0) possibly_damaging(0.531) TCGA-33-6737-01 9 139909531 139909531 C A ABCA2 Missense_Mutation p.S1239I 0.15 deleterious(0.01) possibly_damaging(0.454) TCGA-33-6737-01 9 35102089 35102089 C A STOML2 Intron 0.41 TCGA-33-6737-01 9 5833008 5833008 G A ERMP1 Missense_Mutation p.S7L 0.53 deleterious_low_confidence(0) benign(0.005) TCGA-33-6737-01 9 72659028 72659028 C G MAMDC2 5'UTR 0.74 TCGA-33-6737-01 9 86004554 86004554 A G FRMD3 Missense_Mutation p.F73L 0.21 tolerated(0.08) benign(0.028) TCGA-33-6737-01 9 86616459 86616459 C T RMI1 Silent p.N186N 0.33 TCGA-33-6737-01 X 101970929 101970929 G C GPRASP2 Missense_Mutation p.E378Q 0.63 deleterious(0.04) benign(0.143) TCGA-33-6737-01 X 107225187 107225187 G A TEX13B Silent p.S57S 0.58 TCGA-33-6737-01 X 123870953 123870953 G T TENM1 Silent p.P210P 0.51 TCGA-33-6737-01 X 12734574 12734574 C A FRMPD4 Missense_Mutation p.P666T 0.54 deleterious_low_confidence(0.03) benign(0.016) TCGA-33-6737-01 X 129147552 129147552 C T BCORL1 Silent p.L268L 0.57 TCGA-33-6737-01 X 144337368 144337368 G T SPANXN1 3'UTR 0.52 TCGA-33-6737-01 X 3235316 3235316 G T MXRA5 Missense_Mutation p.Q2136K 0.71 tolerated(0.14) benign(0.098) TCGA-33-6737-01 X 32591903 32591903 G T DMD Missense_Mutation p.Q555K 0.41 benign(0.34) TCGA-33-6737-01 X 34149269 34149269 T C FAM47A Missense_Mutation p.H376R 0.32 tolerated(0.94) benign(0.001) TCGA-33-6737-01 X 34149330 34149330 C T FAM47A Missense_Mutation p.E356K 0.28 tolerated(0.48) probably_damaging(0.956) TCGA-33-6737-01 X 37587032 37587032 G A XK Missense_Mutation p.E218K 0.60 deleterious(0) probably_damaging(1) TCGA-33-6737-01 X 53172514 53172514 G T LINC01155 RNA 0.75 TCGA-33-6738-01 10 124096144 124096144 A C BTBD16 Missense_Mutation p.T467P 0.42 deleterious(0) probably_damaging(1) TCGA-33-6738-01 10 16528529 16528529 G C PTER Missense_Mutation p.R204P 0.19 deleterious(0) probably_damaging(0.971) TCGA-33-6738-01 10 17891717 17891717 A T MRC1L1 Missense_Mutation p.S400C 0.39 probably_damaging(0.994) TCGA-33-6738-01 10 37508244 37508244 C A ANKRD30A Missense_Mutation p.L1146M 0.29 deleterious(0) possibly_damaging(0.86) TCGA-33-6738-01 10 38343794 38343794 G C ZNF33A Missense_Mutation p.D248H 0.13 tolerated(0.05) benign(0.329) TCGA-33-6738-01 11 103043957 103043957 A T DYNC2H1 Missense_Mutation p.E1827D 0.21 probably_damaging(0.972) TCGA-33-6738-01 11 1090824 1090824 G T MUC2 Missense_Mutation p.W1240L 0.29 benign(0.07) TCGA-33-6738-01 11 111709119 111709119 T C ALG9 Missense_Mutation p.S222G 0.33 deleterious(0) unknown(0) TCGA-33-6738-01 11 119216505 119216505 G A MFRP Silent p.G135G 0.21 TCGA-33-6738-01 11 122680525 122680525 A T UBASH3B Silent p.P627P 0.37 TCGA-33-6738-01 11 124135507 124135507 G T OR8G5 Missense_Mutation p.R262L 0.34 deleterious(0.01) benign(0.269) TCGA-33-6738-01 11 17336939 17336939 A G NUCB2 Missense_Mutation p.T307A 0.21 tolerated(0.25) benign(0.005) TCGA-33-6738-01 11 17419235 17419235 A T ABCC8 Missense_Mutation p.L1288Q 0.29 deleterious(0) probably_damaging(0.995) TCGA-33-6738-01 11 30915797 30915797 C G DCDC1 Missense_Mutation p.E1631Q 0.06 tolerated(0.08) possibly_damaging(0.607) TCGA-33-6738-01 11 31128423 31128423 C T DCDC1 Missense_Mutation p.E558K 0.11 tolerated(0.18) probably_damaging(0.916) TCGA-33-6738-01 11 3114774 3114774 C G OSBPL5 Silent p.T643T 0.44 TCGA-33-6738-01 11 47360155 47360155 C T MYBPC3 Missense_Mutation p.E742K 0.24 tolerated(0.06) probably_damaging(0.962) TCGA-33-6738-01 11 47494707 47494707 C A CELF1 Missense_Mutation p.M448I 0.29 tolerated(0.06) benign(0.146) TCGA-33-6738-01 11 48346912 48346912 C G OR4C3 Silent p.L140L 0.09 TCGA-33-6738-01 11 5153282 5153282 G T OR52A5 Silent p.V197V 0.36 TCGA-33-6738-01 11 555098 555098 C G C11orf35 Missense_Mutation p.S596T 0.30 tolerated(0.62) benign(0.019) TCGA-33-6738-01 11 55735237 55735237 G A OR10AG1 Missense_Mutation p.H235Y 0.27 deleterious(0) probably_damaging(1) TCGA-33-6738-01 11 55860932 55860932 G C OR8I2 Missense_Mutation p.R50T 0.04 deleterious(0.02) benign(0.003) TCGA-33-6738-01 11 57188798 57188798 C T SLC43A3 Missense_Mutation p.G137E 0.24 deleterious(0) probably_damaging(1) TCGA-33-6738-01 11 5799101 5799101 G A OR52N5 Missense_Mutation p.S255F 0.36 deleterious(0.03) benign(0.022) TCGA-33-6738-01 11 67399873 67399873 G C TBX10 Missense_Mutation p.P262A 0.13 tolerated(0.22) benign(0.014) TCGA-33-6738-01 11 7817678 7817678 G A OR5P2 Missense_Mutation p.S271F 0.38 deleterious(0) probably_damaging(0.995) TCGA-33-6738-01 11 7982739 7982739 G T NLRP10 Nonsense_Mutation p.C140* 0.53 TCGA-33-6738-01 11 88911641 88911641 G T TYR Missense_Mutation p.D174Y 0.13 deleterious(0) probably_damaging(0.991) TCGA-33-6738-01 11 92715343 92715343 A G MTNR1B Silent p.E318E 0.25 TCGA-33-6738-01 11 99690358 99690358 G A CNTN5 Missense_Mutation p.G47S 0.13 tolerated_low_confidence(0.53) benign(0.001) TCGA-33-6738-01 12 100774635 100774635 C G SLC17A8 Missense_Mutation p.F86L 0.07 deleterious(0) probably_damaging(0.997) TCGA-33-6738-01 12 100813968 100813968 C A SLC17A8 3'UTR 0.36 TCGA-33-6738-01 12 101702042 101702042 A G UTP20 Missense_Mutation p.Y692C 0.30 deleterious(0.02) possibly_damaging(0.701) TCGA-33-6738-01 12 108600065 108600065 G C WSCD2 Splice_Site p.X128_splice 0.19 TCGA-33-6738-01 12 109292555 109292555 C A DAO Missense_Mutation p.L266M 0.23 deleterious(0.02) possibly_damaging(0.682) TCGA-33-6738-01 12 118199248 118199248 G A KSR2 Missense_Mutation p.P185L 0.33 tolerated(0.1) benign(0) TCGA-33-6738-01 12 124265742 124265742 G T DNAH10 Missense_Mutation p.G185V 0.17 benign(0.035) TCGA-33-6738-01 12 133306304 133306304 T A ANKLE2 Missense_Mutation p.E815V 0.29 tolerated(0.26) benign(0.05) TCGA-33-6738-01 12 21721798 21721798 C A GYS2 Splice_Site p.X275_splice 0.16 TCGA-33-6738-01 12 22354711 22354711 T A ST8SIA1 Silent p.A282A 0.30 TCGA-33-6738-01 12 28544239 28544239 A G CCDC91 Silent p.A219A 0.28 TCGA-33-6738-01 12 29446176 29446176 A T FAR2 Intron 0.42 TCGA-33-6738-01 12 49176862 49176862 C A ADCY6 Missense_Mutation p.W119L 0.16 tolerated(0.34) benign(0.004) TCGA-33-6738-01 12 49217530 49217530 C A CACNB3 Missense_Mutation p.P79T 0.28 deleterious(0) probably_damaging(0.998) TCGA-33-6738-01 12 50188793 50188793 G A NCKAP5L Silent p.L950L 0.20 TCGA-33-6738-01 12 51449996 51449996 C G LETMD1 Missense_Mutation p.L257V 0.23 deleterious(0) possibly_damaging(0.908) TCGA-33-6738-01 12 51457705 51457705 G C CSRNP2 Missense_Mutation p.P486A 0.25 deleterious_low_confidence(0.03) benign(0.197) TCGA-33-6738-01 12 53074034 53074034 G T KRT1 Missense_Mutation p.S33R 0.14 deleterious_low_confidence(0.04) unknown(0) TCGA-33-6738-01 12 53345968 53345968 C T KRT18 Silent p.L338L 0.50 TCGA-33-6738-01 12 72090348 72090348 A C TMEM19 Missense_Mutation p.K126T 0.13 deleterious(0) probably_damaging(0.913) TCGA-33-6738-01 12 78400287 78400287 C A NAV3 Silent p.I323I 0.21 TCGA-33-6738-01 12 8991012 8991012 C T A2ML1 Silent p.I312I 0.21 TCGA-33-6738-01 12 9147810 9147810 G C KLRG1 Missense_Mutation p.D95H 0.24 deleterious(0) probably_damaging(0.948) TCGA-33-6738-01 13 101833331 101833331 C G NALCN Intron 0.68 TCGA-33-6738-01 13 20006651 20006651 A T TPTE2 Missense_Mutation p.I395K 0.17 tolerated(1) benign(0.021) TCGA-33-6738-01 13 23913980 23913980 T C SACS Silent p.Q1345Q 0.38 TCGA-33-6738-01 13 25068783 25068783 C G PARP4 Missense_Mutation p.K223N 0.23 tolerated(0.06) possibly_damaging(0.791) TCGA-33-6738-01 13 39425231 39425231 G T FREM2 Missense_Mutation p.R2243L 0.46 tolerated(0.08) benign(0.003) TCGA-33-6738-01 13 53608575 53608575 G A OLFM4 Silent p.V99V 0.56 TCGA-33-6738-01 13 77459365 77459365 C A KCTD12 Missense_Mutation p.D307Y 0.40 deleterious(0) possibly_damaging(0.468) TCGA-33-6738-01 14 100317287 100317287 C G EML1 Silent p.L55L 0.21 TCGA-33-6738-01 14 101005247 101005247 C A BEGAIN Missense_Mutation p.G281C 0.25 deleterious(0.01) possibly_damaging(0.745) TCGA-33-6738-01 14 106053593 106053593 A T IGHA2 Missense_Mutation p.L235Q 0.16 deleterious(0) probably_damaging(0.995) TCGA-33-6738-01 14 106173824 106173824 A T IGHA1 Missense_Mutation p.L248Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-33-6738-01 14 20915278 20915278 C A OSGEP 3'UTR 0.27 TCGA-33-6738-01 14 29237960 29237960 C A FOXG1 3'UTR 0.23 TCGA-33-6738-01 14 70925465 70925465 G C ADAM21 Missense_Mutation p.E417Q 0.20 tolerated(0.15) possibly_damaging(0.905) TCGA-33-6738-01 14 73577665 73577665 C T RBM25 Missense_Mutation p.P607S 0.34 possibly_damaging(0.641) TCGA-33-6738-01 14 74416709 74416709 C T FAM161B Silent p.E70E 0.22 TCGA-33-6738-01 14 75247270 75247270 C - YLPM1 Frame_Shift_Del p.P426Hfs*9 0.18 TCGA-33-6738-01 14 91247161 91247161 C A TTC7B Silent p.R122R 0.24 TCGA-33-6738-01 14 93172914 93172914 C A LGMN Nonsense_Mutation p.E369* 0.27 TCGA-33-6738-01 14 94038330 94038330 A T UNC79 Missense_Mutation p.I439F 0.17 deleterious(0) probably_damaging(0.981) TCGA-33-6738-01 14 94121592 94121592 A T UNC79 Nonsense_Mutation p.K1961* 0.24 TCGA-33-6738-01 14 94395208 94395208 G A FAM181A Missense_Mutation p.E255K 0.17 tolerated(0.05) possibly_damaging(0.574) TCGA-33-6738-01 14 94395225 94395225 G A FAM181A Silent p.K260K 0.19 TCGA-33-6738-01 14 94545875 94545875 C A DDX24 Nonsense_Mutation p.E72* 0.33 TCGA-33-6738-01 14 94964404 94964404 C - SERPINA12 Frame_Shift_Del p.D111Ifs*13 0.17 TCGA-33-6738-01 15 20651295 20651295 G A HERC2P3 RNA 0.26 TCGA-33-6738-01 15 22332504 22332505 - A RP11-69H14.6 RNA 0.23 TCGA-33-6738-01 15 23812170 23812170 A T MKRN3 Missense_Mutation p.D414V 0.31 tolerated(0.1) benign(0.255) TCGA-33-6738-01 15 25222056 25222056 T A SNRPN Silent p.A100A 0.25 TCGA-33-6738-01 15 26793000 26793000 G T GABRB3 Silent p.I454I 0.20 TCGA-33-6738-01 15 28235741 28235741 G T OCA2 Missense_Mutation p.A366E 0.27 deleterious(0.03) probably_damaging(0.962) TCGA-33-6738-01 15 28235742 28235742 C T OCA2 Missense_Mutation p.A366T 0.27 tolerated(0.22) possibly_damaging(0.639) TCGA-33-6738-01 15 34382650 34382650 T C EMC7 Silent p.R121R 0.17 TCGA-33-6738-01 15 37329105 37329105 C T MEIS2 Silent p.P270P 0.18 TCGA-33-6738-01 15 38792313 38792313 G A RASGRP1 Nonsense_Mutation p.R571* 0.23 TCGA-33-6738-01 15 39874056 39874056 A C THBS1 5'UTR 0.11 TCGA-33-6738-01 15 43335585 43335585 G C UBR1 Silent p.L559L 0.22 TCGA-33-6738-01 15 45561706 45561706 G C SLC28A2 Missense_Mutation p.W513C 0.36 deleterious(0.01) probably_damaging(1) TCGA-33-6738-01 15 50264940 50264940 C T ATP8B4 Missense_Mutation p.R361Q 0.13 tolerated(0.35) benign(0.011) TCGA-33-6738-01 15 52194199 52194199 A G TMOD3 Silent p.R330R 0.23 TCGA-33-6738-01 15 59499280 59499280 G A LDHAL6B Silent p.V47V 0.18 TCGA-33-6738-01 15 64967901 64967901 G A ZNF609 Missense_Mutation p.E950K 0.25 deleterious(0.03) possibly_damaging(0.892) TCGA-33-6738-01 15 65808074 65808074 C T DPP8 5'UTR 0.43 TCGA-33-6738-01 15 74536473 74536473 T A CCDC33 Missense_Mutation p.W57R 0.28 tolerated(0.19) probably_damaging(0.934) TCGA-33-6738-01 15 77473870 77473870 A G PEAK1 Silent p.Y133Y 0.26 TCGA-33-6738-01 15 84237394 84237394 G A SH3GL3 Missense_Mutation p.G101R 0.14 deleterious(0) probably_damaging(1) TCGA-33-6738-01 15 90346736 90346736 G A ANPEP Silent p.G480G 0.35 TCGA-33-6738-01 15 97327388 97327388 C T SPATA8 Missense_Mutation p.S32L 0.20 tolerated_low_confidence(0.12) possibly_damaging(0.519) TCGA-33-6738-01 16 16267181 16267181 G T ABCC6 Missense_Mutation p.A916E 0.12 tolerated(0.45) benign(0.007) TCGA-33-6738-01 16 18830856 18830856 G T SMG1 Missense_Mutation p.L3288I 0.20 tolerated(0.11) benign(0.022) TCGA-33-6738-01 16 2093576 2093576 G A NTHL1 Missense_Mutation p.S234L 0.37 deleterious(0) benign(0.065) TCGA-33-6738-01 16 27561120 27561120 C G GTF3C1 Missense_Mutation p.R31P 0.28 deleterious(0) probably_damaging(0.936) TCGA-33-6738-01 16 27751515 27751515 A G KIAA0556 Missense_Mutation p.M633V 0.14 tolerated(0.63) benign(0) TCGA-33-6738-01 16 28913405 28913405 G T ATP2A1 Splice_Site p.X774_splice 0.43 TCGA-33-6738-01 16 4938213 4938213 C G PPL Missense_Mutation p.E802Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-33-6738-01 16 49669608 49669608 C T ZNF423 Missense_Mutation p.G1152E 0.18 tolerated(0.08) benign(0.027) TCGA-33-6738-01 16 50707321 50707321 T A SNX20 Missense_Mutation p.H316L 0.29 deleterious_low_confidence(0.04) benign(0.027) TCGA-33-6738-01 16 65345415 65345415 T A LINC00922 RNA 0.21 TCGA-33-6738-01 16 67314187 67314187 G A PLEKHG4 Silent p.G80G 0.29 TCGA-33-6738-01 16 75646193 75646193 T A ADAT1 Missense_Mutation p.I331F 0.20 deleterious(0) probably_damaging(0.999) TCGA-33-6738-01 17 10348564 10348564 G C MYH4 Missense_Mutation p.A1762G 0.29 deleterious(0.01) benign(0.347) TCGA-33-6738-01 17 16068329 16068329 T C NCOR1 Silent p.K194K 0.18 TCGA-33-6738-01 17 16068431 16068431 A C NCOR1 Missense_Mutation p.I160M 0.09 benign(0.089) TCGA-33-6738-01 17 28384813 28384813 G C EFCAB5 Missense_Mutation p.E829Q 0.28 deleterious(0.02) probably_damaging(0.995) TCGA-33-6738-01 17 35562783 35562783 G C ACACA Missense_Mutation p.P1318A 0.37 tolerated(0.84) benign(0) TCGA-33-6738-01 17 38320314 38320314 G C CASC3 Missense_Mutation p.D456H 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.547) TCGA-33-6738-01 17 38911238 38911238 T C KRT25 Missense_Mutation p.S96G 0.21 deleterious(0) benign(0.101) TCGA-33-6738-01 17 39959629 39959629 C A LEPREL4 Missense_Mutation p.A401S 0.24 tolerated(0.38) benign(0.032) TCGA-33-6738-01 17 4080529 4080529 G C ANKFY1 Missense_Mutation p.F931L 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-33-6738-01 17 43923993 43923993 G A SPPL2C Missense_Mutation p.S574N 0.21 tolerated(0.08) benign(0.213) TCGA-33-6738-01 17 48450558 48450558 G C MRPL27 5'UTR 0.25 TCGA-33-6738-01 17 48918302 48918302 C T WFIKKN2 Silent p.A551A 0.25 TCGA-33-6738-01 17 56499785 56499785 T A HSF5 Missense_Mutation p.H576L 0.37 deleterious_low_confidence(0.02) benign(0.013) TCGA-33-6738-01 17 59557248 59557248 C T TBX4 Nonsense_Mutation p.Q237* 0.19 TCGA-33-6738-01 17 6920283 6920283 T C C17orf49 Missense_Mutation p.I155T 0.36 deleterious(0.04) benign(0.416) TCGA-33-6738-01 17 6927497 6927497 T C BCL6B Missense_Mutation p.L92P 0.40 deleterious(0) probably_damaging(1) TCGA-33-6738-01 17 71389696 71389696 C A SDK2 Intron 0.17 TCGA-33-6738-01 17 72352803 72352803 G A BTBD17 Missense_Mutation p.P477L 0.36 deleterious(0.04) benign(0.118) TCGA-33-6738-01 17 7579312 7579312 C A TP53 Silent p.T125T 0.32 TCGA-33-6738-01 17 76045495 76045495 G A TNRC6C Missense_Mutation p.V118M 0.09 deleterious(0.03) probably_damaging(1) TCGA-33-6738-01 18 33607270 33607270 G C RPRD1A Missense_Mutation p.L164V 0.15 tolerated(0.17) benign(0.004) TCGA-33-6738-01 18 44660887 44660887 C A HDHD2 Missense_Mutation p.R97L 0.38 tolerated(0.28) benign(0.106) TCGA-33-6738-01 18 50832030 50832030 C T DCC Missense_Mutation p.T665M 0.39 tolerated(0.11) probably_damaging(0.917) TCGA-33-6738-01 18 71796782 71796782 C A FBXO15 Missense_Mutation p.V215F 0.26 deleterious(0.02) benign(0.391) TCGA-33-6738-01 19 10602493 10602493 C T KEAP1 Missense_Mutation p.R362Q 0.30 deleterious(0.02) probably_damaging(0.996) TCGA-33-6738-01 19 11129660 11129660 T C SMARCA4 Silent p.F822F 0.32 TCGA-33-6738-01 19 15566933 15566933 G A RASAL3 Missense_Mutation p.T568I 0.39 deleterious(0.04) benign(0.234) TCGA-33-6738-01 19 23159277 23159277 C - ZNF728 Frame_Shift_Del p.E288Nfs*73 0.08 TCGA-33-6738-01 19 33093015 33093015 T C ANKRD27 Silent p.E891E 0.24 TCGA-33-6738-01 19 37647247 37647247 G T CTC-454I21.3 Missense_Mutation p.S16Y 0.25 deleterious(0) probably_damaging(0.981) TCGA-33-6738-01 19 37974962 37974962 C G ZNF570 Missense_Mutation p.F146L 0.06 tolerated(0.41) benign(0) TCGA-33-6738-01 19 39108241 39108241 G A MAP4K1 Silent p.L42L 0.29 TCGA-33-6738-01 19 39971356 39971356 G A TIMM50 Missense_Mutation p.G58S 0.19 deleterious_low_confidence(0) benign(0.012) TCGA-33-6738-01 19 40542216 40542216 G A ZNF780B Nonsense_Mutation p.Q184* 0.26 TCGA-33-6738-01 19 45781812 45781812 G A MARK4 Silent p.E315E 0.24 TCGA-33-6738-01 19 46056832 46056832 G A OPA3 Intron 0.30 TCGA-33-6738-01 19 49965992 49965992 G T ALDH16A1 Missense_Mutation p.A360S 0.21 deleterious(0.02) probably_damaging(1) TCGA-33-6738-01 19 50905511 50905528 CGTGGCGCTGCCGCGCCT - POLD1 In_Frame_Del p.L216_A221del 0.20 TCGA-33-6738-01 19 51298214 51298214 C A ACPT Silent p.I386I 0.23 TCGA-33-6738-01 19 51914401 51914401 C T SIGLEC10 Silent p.R682R 0.29 TCGA-33-6738-01 19 52131222 52131222 G T SIGLEC5 Missense_Mutation p.L288M 0.26 deleterious(0.01) probably_damaging(0.938) TCGA-33-6738-01 19 52222509 52222509 C A HAS1 Missense_Mutation p.V218F 0.11 deleterious(0) probably_damaging(0.996) TCGA-33-6738-01 19 53848849 53848849 G T ZNF845 Missense_Mutation p.V36L 0.22 deleterious(0) probably_damaging(0.976) TCGA-33-6738-01 19 55286709 55286709 T A KIR2DL1 Missense_Mutation p.Y155N 0.50 deleterious(0) probably_damaging(0.999) TCGA-33-6738-01 19 55286711 55286711 T A KIR2DL1 Nonsense_Mutation p.Y155* 0.50 TCGA-33-6738-01 19 56935369 56935369 A T ZNF583 Missense_Mutation p.S448C 0.22 tolerated(0.15) probably_damaging(0.998) TCGA-33-6738-01 19 57132771 57132771 G C ZNF71 Missense_Mutation p.W39S 0.27 tolerated(0.12) benign(0.001) TCGA-33-6738-01 19 58290278 58290278 G C ZNF586 Missense_Mutation p.R108T 0.20 tolerated(0.18) benign(0.097) TCGA-33-6738-01 19 8993395 8993395 G T MUC16 Missense_Mutation p.D13898E 0.32 probably_damaging(0.998) TCGA-33-6738-01 19 9073196 9073196 A T MUC16 Silent p.P4750P 0.29 TCGA-33-6738-01 1 100185123 100185123 C A FRRS1 Nonsense_Mutation p.G363* 0.11 TCGA-33-6738-01 1 103440440 103440440 C A COL11A1 Splice_Site p.X919_splice 0.31 TCGA-33-6738-01 1 10364286 10364286 G T KIF1B Intron 0.26 TCGA-33-6738-01 1 109607112 109607112 C A TAF13 3'UTR 0.23 TCGA-33-6738-01 1 110709615 110709615 G T SLC6A17 Missense_Mutation p.A22S 0.21 tolerated(0.08) benign(0.338) TCGA-33-6738-01 1 111145873 111145873 C A KCNA2 3'UTR 0.38 TCGA-33-6738-01 1 113057612 113057612 C A WNT2B Missense_Mutation p.A100D 0.34 deleterious(0) probably_damaging(0.914) TCGA-33-6738-01 1 115113346 115113346 C T BCAS2 Missense_Mutation p.A149T 0.20 tolerated(0.25) benign(0.002) TCGA-33-6738-01 1 152856967 152856967 G T SMCP Missense_Mutation p.Q23H 0.21 tolerated(0.1) benign(0) TCGA-33-6738-01 1 156212918 156212923 CAGGAG - BGLAP In_Frame_Del p.Q90_E91del 0.18 TCGA-33-6738-01 1 157736686 157736686 C A FCRL2 Missense_Mutation p.G413V 0.16 tolerated(0.29) benign(0.004) TCGA-33-6738-01 1 158368373 158368373 T A OR10T2 Missense_Mutation p.K295I 0.21 deleterious(0) possibly_damaging(0.562) TCGA-33-6738-01 1 158517306 158517306 G T OR6Y1 Missense_Mutation p.A197D 0.19 tolerated(0.1) benign(0.016) TCGA-33-6738-01 1 158645960 158645960 G C SPTA1 Missense_Mutation p.S361R 0.22 tolerated(0.26) benign(0.008) TCGA-33-6738-01 1 158655079 158655079 C A SPTA1 Missense_Mutation p.R28L 0.26 deleterious(0.02) probably_damaging(0.997) TCGA-33-6738-01 1 159169543 159169543 C A CADM3 Missense_Mutation p.P353T 0.14 tolerated(0.05) benign(0.098) TCGA-33-6738-01 1 169206906 169206906 C T NME7 Silent p.L258L 0.31 TCGA-33-6738-01 1 169513610 169513610 A G F5 Silent p.Y633Y 0.25 TCGA-33-6738-01 1 171501586 171501586 A G PRRC2C Silent p.Q451Q 0.28 TCGA-33-6738-01 1 17682587 17682587 G T PADI4 Nonsense_Mutation p.E474* 0.33 TCGA-33-6738-01 1 177001786 177001786 C T ASTN1 Missense_Mutation p.G224D 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.761) TCGA-33-6738-01 1 19430602 19430602 C A UBR4 Nonsense_Mutation p.E4293* 0.19 TCGA-33-6738-01 1 200377439 200377439 C A ZNF281 Missense_Mutation p.L465F 0.20 deleterious(0.01) benign(0.399) TCGA-33-6738-01 1 203185959 203185959 G T CHIT1 3'UTR 0.33 TCGA-33-6738-01 1 207958998 207958998 C T CD46 Silent p.Y366Y 0.25 TCGA-33-6738-01 1 209963985 209963985 C A IRF6 Missense_Mutation p.E305D 0.21 tolerated(0.12) probably_damaging(0.996) TCGA-33-6738-01 1 210971098 210971098 A T KCNH1 Missense_Mutation p.L556Q 0.20 deleterious(0) probably_damaging(0.937) TCGA-33-6738-01 1 22169287 22169287 C A HSPG2 Silent p.G2962G 0.22 TCGA-33-6738-01 1 236647275 236647275 A C EDARADD 3'Flank 0.27 TCGA-33-6738-01 1 247614570 247614570 G T OR2B11 Missense_Mutation p.H239N 0.31 deleterious(0.02) benign(0.096) TCGA-33-6738-01 1 248224740 248224740 C A OR2L3 Missense_Mutation p.P253T 0.23 tolerated(0.22) benign(0.25) TCGA-33-6738-01 1 248343560 248343560 C A OR2M2 Silent p.S91S 0.29 TCGA-33-6738-01 1 248637399 248637399 A G OR2T3 Missense_Mutation p.M250V 0.11 tolerated(0.06) benign(0.018) TCGA-33-6738-01 1 25824772 25824772 G C TMEM57 Missense_Mutation p.D604H 0.33 deleterious(0) possibly_damaging(0.89) TCGA-33-6738-01 1 40323078 40323078 G A TRIT1 Silent p.G62G 0.28 TCGA-33-6738-01 1 6269993 6269993 G T RNF207 Missense_Mutation p.A255S 0.26 tolerated(0.37) benign(0.006) TCGA-33-6738-01 1 63299717 63299717 A T ATG4C Missense_Mutation p.L314F 0.14 deleterious(0.05) probably_damaging(1) TCGA-33-6738-01 1 66064452 66064452 G T LEPR Missense_Mutation p.S320I 0.19 deleterious(0) probably_damaging(0.95) TCGA-33-6738-01 1 6885230 6885230 C A CAMTA1 Nonsense_Mutation p.S65* 0.25 TCGA-33-6738-01 1 68904934 68904934 A G RPE65 Silent p.S266S 0.17 TCGA-33-6738-01 1 70703169 70703169 G C SRSF11 Missense_Mutation p.E218Q 0.14 deleterious(0.01) unknown(0) TCGA-33-6738-01 1 75716908 75716908 C A SLC44A5 Missense_Mutation p.C111F 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-33-6738-01 1 85817232 85817232 C T DDAH1 Missense_Mutation p.R145K 0.09 tolerated(0.82) probably_damaging(0.998) TCGA-33-6738-01 1 894382 894382 G T NOC2L Missense_Mutation p.P36T 0.29 tolerated(0.15) benign(0.044) TCGA-33-6738-01 1 97547986 97547986 C G DPYD Missense_Mutation p.G936A 0.19 tolerated(0.24) benign(0.008) TCGA-33-6738-01 20 1902360 1902360 T C SIRPA Splice_Site p.X252_splice 0.21 TCGA-33-6738-01 20 19662522 19662522 A C SLC24A3 Missense_Mutation p.Q263P 0.47 tolerated(0.28) benign(0.112) TCGA-33-6738-01 20 21494109 21494109 C T NKX2-2 Missense_Mutation p.D67N 0.08 tolerated(0.08) benign(0.038) TCGA-33-6738-01 20 3644035 3644035 G C GFRA4 Missense_Mutation p.C4W 0.37 deleterious(0.02) probably_damaging(0.926) TCGA-33-6738-01 20 36687795 36687795 G T RPRD1B Splice_Site p.X177_splice 0.33 TCGA-33-6738-01 20 40709449 40709449 T A PTPRT 3'UTR 0.45 TCGA-33-6738-01 20 44684794 44684794 G C SLC12A5 Missense_Mutation p.Q954H 0.25 deleterious(0.01) possibly_damaging(0.764) TCGA-33-6738-01 20 44806819 44806819 G A CDH22 Missense_Mutation p.H561Y 0.28 tolerated(0.29) probably_damaging(0.996) TCGA-33-6738-01 20 51873052 51873052 A T TSHZ2 Nonsense_Mutation p.K1019* 0.20 TCGA-33-6738-01 20 56140476 56140476 C G PCK1 Silent p.A495A 0.21 TCGA-33-6738-01 20 60922030 60922030 G A LAMA5 Silent p.C337C 0.20 TCGA-33-6738-01 20 61834281 61834281 C A YTHDF1 Silent p.A337A 0.44 TCGA-33-6738-01 20 61957462 61957462 G A COL20A1 Silent p.L1139L 0.26 TCGA-33-6738-01 20 61978217 61978217 T A CHRNA4 Splice_Site p.X587_splice 0.39 TCGA-33-6738-01 20 62595513 62595513 G A ZNF512B Missense_Mutation p.P464L 0.26 tolerated(0.15) benign(0.002) TCGA-33-6738-01 20 62630441 62630441 G C PRPF6 Missense_Mutation p.G272A 0.20 deleterious(0) possibly_damaging(0.84) TCGA-33-6738-01 21 31538736 31538736 T C CLDN17 Missense_Mutation p.Y67C 0.33 deleterious(0) probably_damaging(1) TCGA-33-6738-01 21 31768523 31768523 T A KRTAP13-1 Missense_Mutation p.L40H 0.23 deleterious(0.01) probably_damaging(0.971) TCGA-33-6738-01 21 33032038 33032038 C T SOD1 5'UTR 0.31 TCGA-33-6738-01 21 33039573 33039573 A G SOD1 Missense_Mutation p.H81R 0.18 deleterious(0) probably_damaging(1) TCGA-33-6738-01 21 33954675 33954676 - G AP000275.65 Frame_Shift_Ins p.K239Nfs*6 0.16 TCGA-33-6738-01 21 37602834 37602834 G T DOPEY2 Silent p.L584L 0.34 TCGA-33-6738-01 21 37732266 37732266 C G MORC3 Missense_Mutation p.Q408E 0.04 deleterious(0) probably_damaging(0.946) TCGA-33-6738-01 21 38139583 38139583 C T HLCS Silent p.L485L 0.13 TCGA-33-6738-01 21 38997524 38997524 G A KCNJ6 Silent p.N403N 0.18 TCGA-33-6738-01 21 40765106 40765106 C G WRB Missense_Mutation p.I117M 0.47 tolerated(0.22) benign(0.056) TCGA-33-6738-01 22 17308731 17308731 G C HSFY1P1 RNA 0.33 TCGA-33-6738-01 22 19137325 19137325 A C GSC2 Missense_Mutation p.S122A 0.29 tolerated(0.55) benign(0) TCGA-33-6738-01 22 19754132 19754132 G A TBX1 Silent p.P410P 0.50 TCGA-33-6738-01 22 20132925 20132925 G A ZDHHC8 Intron 0.55 TCGA-33-6738-01 22 20229345 20229345 C T RTN4R Silent p.G437G 0.30 TCGA-33-6738-01 22 20760628 20760628 G T ZNF74 Missense_Mutation p.Q435H 0.17 deleterious(0) probably_damaging(0.997) TCGA-33-6738-01 22 23241825 23241825 G T IGLL5 3'Flank 0.25 TCGA-33-6738-01 22 32894395 32894395 G T FBXO7 Missense_Mutation p.D483Y 0.59 deleterious(0.01) probably_damaging(0.996) TCGA-33-6738-01 22 38370053 38370053 C T SOX10 Missense_Mutation p.E284K 0.10 deleterious(0) benign(0.269) TCGA-33-6738-01 22 38823853 38823853 C T KCNJ4 Silent p.A95A 0.68 TCGA-33-6738-01 22 45278957 45278957 C - PHF21B 3'UTR 0.40 TCGA-33-6738-01 2 101654121 101654121 C A TBC1D8 Missense_Mutation p.G427V 0.20 tolerated(0.15) benign(0.006) TCGA-33-6738-01 2 105858489 105858489 C A GPR45 Silent p.I58I 0.25 TCGA-33-6738-01 2 120620221 120620221 T G PTPN4 Splice_Site p.X82_splice 0.19 TCGA-33-6738-01 2 131460002 131460002 G C FAR2P3 3'Flank 0.25 TCGA-33-6738-01 2 135738854 135738854 T A MAP3K19 Missense_Mutation p.N1153Y 0.29 deleterious(0) possibly_damaging(0.77) TCGA-33-6738-01 2 136481610 136481610 G C R3HDM1 Silent p.R1016R 0.27 TCGA-33-6738-01 2 152512919 152512919 G A NEB Silent p.L2081L 0.28 TCGA-33-6738-01 2 167129053 167129053 G A SCN9A Silent p.H1058H 0.19 TCGA-33-6738-01 2 168099868 168099868 T A XIRP2 Missense_Mutation p.W656R 0.21 benign(0.315) TCGA-33-6738-01 2 175213299 175213299 C G CIR1 Missense_Mutation p.D427H 0.20 deleterious_low_confidence(0.03) possibly_damaging(0.623) TCGA-33-6738-01 2 17699587 17699587 A G RAD51AP2 Silent p.S32S 0.48 TCGA-33-6738-01 2 179415845 179415845 G A TTN Silent p.C30471C 0.24 TCGA-33-6738-01 2 179451444 179451444 C T TTN Missense_Mutation p.G21395D 0.26 TCGA-33-6738-01 2 179499309 179499309 C G TTN Missense_Mutation p.E14067Q 0.09 TCGA-33-6738-01 2 179577647 179577647 A T TTN Missense_Mutation p.N9035K 0.09 TCGA-33-6738-01 2 207630121 207630121 G T FASTKD2 5'UTR 0.36 TCGA-33-6738-01 2 210557707 210557707 G T MAP2 Silent p.T271T 0.35 TCGA-33-6738-01 2 220370084 220370084 G T GMPPA Missense_Mutation p.G252V 0.22 deleterious(0) probably_damaging(0.972) TCGA-33-6738-01 2 225698889 225698889 G T DOCK10 Missense_Mutation p.T981K 0.15 deleterious(0.03) benign(0.016) TCGA-33-6738-01 2 228767826 228767826 G T DAW1 Splice_Site p.X216_splice 0.30 TCGA-33-6738-01 2 241078713 241078713 C A OTOS Missense_Mutation p.W48C 0.19 deleterious(0) probably_damaging(0.999) TCGA-33-6738-01 2 242011234 242011234 G C SNED1 Missense_Mutation p.R1253T 0.42 deleterious(0) probably_damaging(0.999) TCGA-33-6738-01 2 242814959 242814959 A T CXXC11 Nonsense_Mutation p.K418* 0.23 TCGA-33-6738-01 2 24433732 24433732 C T ITSN2 Missense_Mutation p.V1392M 0.09 deleterious(0) unknown(0) TCGA-33-6738-01 2 25965598 25965598 T C ASXL2 Missense_Mutation p.Q1203R 0.51 tolerated(0.06) benign(0.012) TCGA-33-6738-01 2 27656927 27656927 T C NRBP1 Silent p.Y135Y 0.10 TCGA-33-6738-01 2 29294809 29294809 C G C2orf71 Silent p.G773G 0.55 TCGA-33-6738-01 2 39053171 39053171 C G DHX57 Silent p.G944G 0.42 TCGA-33-6738-01 2 42510063 42510063 G T EML4 Nonsense_Mutation p.E298* 0.10 TCGA-33-6738-01 2 64779913 64779913 T G AFTPH Missense_Mutation p.F435L 0.03 tolerated(0.09) benign(0.071) TCGA-33-6738-01 2 74659725 74659725 T A RTKN Silent p.A60A 0.13 TCGA-33-6738-01 2 75278526 75278526 G T TACR1 Missense_Mutation p.L262M 0.45 deleterious(0.01) possibly_damaging(0.892) TCGA-33-6738-01 2 84785018 84785018 G A DNAH6 Missense_Mutation p.E588K 0.20 tolerated(0.73) benign(0.001) TCGA-33-6738-01 2 97405634 97405634 G A LMAN2L Silent p.F48F 0.25 TCGA-33-6738-01 3 100972568 100972568 C G IMPG2 Missense_Mutation p.S404T 0.31 tolerated(0.47) benign(0.029) TCGA-33-6738-01 3 113379817 113379817 C G KIAA2018 Missense_Mutation p.E238Q 0.26 possibly_damaging(0.752) TCGA-33-6738-01 3 116163752 116163752 C G LSAMP Missense_Mutation p.V43L 0.28 deleterious(0.01) possibly_damaging(0.733) TCGA-33-6738-01 3 119343968 119343968 T C PLA1A Intron 0.32 TCGA-33-6738-01 3 121151871 121151871 C A POLQ Missense_Mutation p.R2518L 0.32 tolerated(0.77) benign(0.007) TCGA-33-6738-01 3 123699209 123699209 G T ROPN1 Intron 0.42 TCGA-33-6738-01 3 141917694 141917694 T A GK5 Missense_Mutation p.T165S 0.63 tolerated(0.19) benign(0.07) TCGA-33-6738-01 3 169854248 169854248 G A PHC3 Missense_Mutation p.A293V 0.26 tolerated(0.13) possibly_damaging(0.648) TCGA-33-6738-01 3 183700634 183700634 C A ABCC5 Silent p.R251R 0.37 TCGA-33-6738-01 3 189607176 189607176 C G TP63 Missense_Mutation p.L519V 0.57 tolerated(0.51) probably_damaging(0.978) TCGA-33-6738-01 3 195518309 195518309 C A MUC4 Missense_Mutation p.G48C 0.53 unknown(0) TCGA-33-6738-01 3 43759340 43759340 G A ABHD5 Silent p.V317V 0.33 TCGA-33-6738-01 3 50387235 50387235 C G NPRL2 Missense_Mutation p.C67S 0.47 deleterious(0.03) probably_damaging(0.99) TCGA-33-6738-01 3 50387236 50387236 A G NPRL2 Missense_Mutation p.C67R 0.47 deleterious(0) probably_damaging(0.995) TCGA-33-6738-01 3 56683050 56683050 A C FAM208A Silent p.L468L 0.24 TCGA-33-6738-01 3 98072707 98072707 G C OR5K4 Missense_Mutation p.E4Q 0.26 tolerated(0.06) benign(0.211) TCGA-33-6738-01 4 100235191 100235191 G T ADH1B Silent p.G205G 0.32 TCGA-33-6738-01 4 110788862 110788862 G T LRIT3 Missense_Mutation p.V219F 0.28 tolerated(0.17) possibly_damaging(0.534) TCGA-33-6738-01 4 123192753 123192753 G T KIAA1109 Missense_Mutation p.V2692L 0.33 probably_damaging(0.986) TCGA-33-6738-01 4 128651885 128651885 G A SLC25A31 Missense_Mutation p.R62Q 0.23 tolerated(1) benign(0.001) TCGA-33-6738-01 4 147431196 147431196 C A SLC10A7 Silent p.L63L 0.26 TCGA-33-6738-01 4 149075964 149075964 C A NR3C2 Silent p.P701P 0.27 TCGA-33-6738-01 4 153864269 153864269 A T FHDC1 Silent p.T20T 0.33 TCGA-33-6738-01 4 155156230 155156230 C A DCHS2 Missense_Mutation p.A2737S 0.36 tolerated(0.46) benign(0.012) TCGA-33-6738-01 4 155254330 155254330 C A DCHS2 Silent p.R511R 0.13 TCGA-33-6738-01 4 177608508 177608508 G T VEGFC Missense_Mutation p.S326R 0.35 tolerated(0.19) benign(0.299) TCGA-33-6738-01 4 186382312 186382312 A T CCDC110 Missense_Mutation p.V80E 0.35 deleterious(0.01) benign(0.065) TCGA-33-6738-01 4 186548130 186548130 C A SORBS2 Nonsense_Mutation p.E360* 0.26 TCGA-33-6738-01 4 187554978 187554978 C A FAT1 Splice_Site p.X1395_splice 0.32 TCGA-33-6738-01 4 36069852 36069852 T C ARAP2 Missense_Mutation p.K1598E 0.16 tolerated(0.73) benign(0.017) TCGA-33-6738-01 4 41615573 41615573 C A LIMCH1 Missense_Mutation p.P193T 0.22 deleterious(0) probably_damaging(0.999) TCGA-33-6738-01 4 46737218 46737218 G A COX7B2 5'UTR 0.23 TCGA-33-6738-01 4 47625640 47625640 A T CORIN Missense_Mutation p.C830S 0.11 tolerated(0.08) probably_damaging(0.995) TCGA-33-6738-01 4 53279 53279 G T ZNF595 5'UTR 0.07 TCGA-33-6738-01 4 55955082 55955082 C G KDR Missense_Mutation p.E1155Q 0.15 deleterious(0.04) possibly_damaging(0.612) TCGA-33-6738-01 4 62862076 62862076 G T LPHN3 Splice_Site p.X1033_splice 0.29 TCGA-33-6738-01 4 6863244 6863244 G T KIAA0232 Missense_Mutation p.G379W 0.19 deleterious_low_confidence(0) possibly_damaging(0.9) TCGA-33-6738-01 4 88989079 88989079 A G PKD2 Silent p.L796L 0.32 TCGA-33-6738-01 4 89618165 89618165 A G NAP1L5 3'UTR 0.27 TCGA-33-6738-01 5 114860098 114860098 C A FEM1C Missense_Mutation p.Q587H 0.39 deleterious(0.02) probably_damaging(0.947) TCGA-33-6738-01 5 137342716 137342716 C T FAM13B Missense_Mutation p.E271K 0.36 tolerated(0.39) benign(0.056) TCGA-33-6738-01 5 140750065 140750065 A T PCDHGB3 Missense_Mutation p.Y35F 0.35 deleterious(0) probably_damaging(1) TCGA-33-6738-01 5 140769609 140769609 G T PCDHGB4 Missense_Mutation p.A720S 0.39 tolerated(0.39) benign(0.011) TCGA-33-6738-01 5 140801500 140801500 G A PCDHGA11 Missense_Mutation p.V236I 0.44 tolerated_low_confidence(0.08) benign(0.043) TCGA-33-6738-01 5 149011578 149011578 A T ARHGEF37 Missense_Mutation p.S618C 0.40 tolerated(0.05) probably_damaging(0.928) TCGA-33-6738-01 5 149589127 149589127 G C SLC6A7 Silent p.T620T 0.37 TCGA-33-6738-01 5 149630287 149630287 G T CAMK2A Silent p.I260I 0.38 TCGA-33-6738-01 5 150310411 150310411 C A ZNF300P1 RNA 0.54 TCGA-33-6738-01 5 156484958 156484958 G T HAVCR1 5'UTR 0.55 TCGA-33-6738-01 5 156522406 156522406 C A HAVCR2 Missense_Mutation p.G196V 0.30 tolerated(0.06) benign(0.323) TCGA-33-6738-01 5 170216170 170216170 G C GABRP Missense_Mutation p.G31R 0.07 tolerated(0.53) benign(0.001) TCGA-33-6738-01 5 37479940 37479940 C G WDR70 Missense_Mutation p.Q231E 0.04 tolerated(0.37) possibly_damaging(0.621) TCGA-33-6738-01 5 37701163 37701163 A G WDR70 Missense_Mutation p.D399G 0.17 deleterious(0) probably_damaging(0.999) TCGA-33-6738-01 5 40853853 40853853 C G CARD6 Missense_Mutation p.R807G 0.04 tolerated(0.13) benign(0.007) TCGA-33-6738-01 5 45462054 45462054 A G HCN1 Missense_Mutation p.I302T 0.21 deleterious(0.01) probably_damaging(0.991) TCGA-33-6738-01 5 63256840 63256840 G A HTR1A Missense_Mutation p.T236I 0.32 tolerated(0.14) benign(0) TCGA-33-6738-01 5 68470081 68470081 G T CCNB1 Nonsense_Mutation p.E184* 0.32 TCGA-33-6738-01 5 76707942 76707942 A G PDE8B Missense_Mutation p.S532G 0.35 tolerated(0.21) benign(0.001) TCGA-33-6738-01 5 76707994 76707994 A C PDE8B Missense_Mutation p.Q549P 0.10 deleterious(0.02) benign(0.397) TCGA-33-6738-01 5 78325819 78325819 C T DMGDH Silent p.K574K 0.33 TCGA-33-6738-01 5 92923917 92923917 G T NR2F1 Missense_Mutation p.R253L 0.44 deleterious(0) probably_damaging(0.961) TCGA-33-6738-01 6 108042157 108042157 C A SCML4 Silent p.V241V 0.14 TCGA-33-6738-01 6 111737540 111737540 C A REV3L Missense_Mutation p.G92V 0.18 deleterious(0) probably_damaging(0.972) TCGA-33-6738-01 6 12125965 12125965 T C HIVEP1 Silent p.G1979G 0.20 TCGA-33-6738-01 6 133050042 133050042 G C VNN3 Silent p.L125L 0.43 TCGA-33-6738-01 6 142399941 142399941 C A NMBR Silent p.L174L 0.44 TCGA-33-6738-01 6 146351032 146351032 C G GRM1 Missense_Mutation p.L127V 0.05 deleterious(0.04) possibly_damaging(0.557) TCGA-33-6738-01 6 158294176 158294176 G C SNX9 Missense_Mutation p.E48Q 0.28 tolerated(0.1) possibly_damaging(0.59) TCGA-33-6738-01 6 168467467 168467467 C A FRMD1 Silent p.V143V 0.29 TCGA-33-6738-01 6 22290438 22290438 G T PRL Silent p.R153R 0.16 TCGA-33-6738-01 6 26123904 26123904 C T HIST1H2BC Missense_Mutation p.E77K 0.19 deleterious_low_confidence(0.04) possibly_damaging(0.849) TCGA-33-6738-01 6 30459024 30459024 G A HLA-E Missense_Mutation p.D241N 0.26 deleterious_low_confidence(0.04) probably_damaging(0.995) TCGA-33-6738-01 6 30587570 30587570 G T MRPS18B Missense_Mutation p.R91L 0.22 deleterious(0) possibly_damaging(0.769) TCGA-33-6738-01 6 31669103 31669103 C G ABHD16A Missense_Mutation p.W68C 0.17 deleterious(0) probably_damaging(0.95) TCGA-33-6738-01 6 32156510 32156510 C G PBX2 Missense_Mutation p.K95N 0.12 deleterious(0) possibly_damaging(0.461) TCGA-33-6738-01 6 47541892 47541892 C A CD2AP Silent p.R212R 0.27 TCGA-33-6738-01 6 49701445 49701445 G T CRISP3 Missense_Mutation p.P155T 0.22 deleterious(0.04) benign(0.039) TCGA-33-6738-01 6 49754427 49754427 C A PGK2 Silent p.G158G 0.34 TCGA-33-6738-01 6 84871477 84871477 C T KIAA1009 Silent p.K888K 0.40 TCGA-33-6738-01 6 90440489 90440489 C T MDN1 Missense_Mutation p.G1699E 0.23 benign(0.011) TCGA-33-6738-01 6 90661122 90661122 G C BACH2 Missense_Mutation p.Q235E 0.22 deleterious(0.01) possibly_damaging(0.869) TCGA-33-6738-01 6 97246630 97246630 G C GPR63 Missense_Mutation p.C326W 0.33 deleterious(0) possibly_damaging(0.903) TCGA-33-6738-01 7 100459495 100459495 G T SLC12A9 Missense_Mutation p.G558V 0.19 deleterious(0) probably_damaging(0.993) TCGA-33-6738-01 7 102738791 102738791 G A ARMC10 Missense_Mutation p.E275K 0.12 deleterious(0) probably_damaging(1) TCGA-33-6738-01 7 120387866 120387867 CC - KCND2 Frame_Shift_Del p.P617* 0.13 TCGA-33-6738-01 7 126249474 126249474 G A GRM8 Missense_Mutation p.T479I 0.34 tolerated(0.22) benign(0.003) TCGA-33-6738-01 7 128454720 128454720 A T CCDC136 Missense_Mutation p.E931V 0.21 deleterious(0) probably_damaging(0.972) TCGA-33-6738-01 7 133994209 133994209 T A SLC35B4 Missense_Mutation p.I34F 0.22 deleterious(0.02) benign(0.03) TCGA-33-6738-01 7 135095396 135095396 C A CNOT4 Silent p.A230A 0.27 TCGA-33-6738-01 7 138546037 138546037 C T KIAA1549 Missense_Mutation p.A1699T 0.31 deleterious(0) probably_damaging(1) TCGA-33-6738-01 7 138968214 138968214 G T UBN2 Missense_Mutation p.G855C 0.39 deleterious_low_confidence(0) probably_damaging(1) TCGA-33-6738-01 7 142176377 142176377 C G TRBV7-4 Missense_Mutation p.C100S 0.30 tolerated(0.51) benign(0) TCGA-33-6738-01 7 142625898 142625898 T A TRPV5 Missense_Mutation p.N217I 0.24 deleterious(0) possibly_damaging(0.864) TCGA-33-6738-01 7 142991832 142991832 A G CASP2 Missense_Mutation p.Y238C 0.41 deleterious(0) probably_damaging(0.998) TCGA-33-6738-01 7 143055945 143055945 G A FAM131B Silent p.G147G 0.29 TCGA-33-6738-01 7 143657959 143657959 G A OR2F1 Missense_Mutation p.G299E 0.26 tolerated(0.23) benign(0.013) TCGA-33-6738-01 7 144101709 144101709 G A NOBOX Silent p.G50G 0.26 TCGA-33-6738-01 7 150647350 150647350 T C KCNH2 Silent p.T768T 0.26 TCGA-33-6738-01 7 154875947 154875947 G T HTR5A Missense_Mutation p.W275L 0.32 tolerated(0.24) benign(0.023) TCGA-33-6738-01 7 155100217 155100217 C G INSIG1 3'UTR 0.22 TCGA-33-6738-01 7 157874062 157874062 C A PTPRN2 Nonsense_Mutation p.G551* 0.27 TCGA-33-6738-01 7 16505170 16505183 CTGGAACAGGTTTA - SOSTDC1 Frame_Shift_Del p.K38Tfs*20 0.16 TCGA-33-6738-01 7 23872006 23872006 A T STK31 3'UTR 0.28 TCGA-33-6738-01 7 24905691 24905691 T A OSBPL3 Nonsense_Mutation p.K183* 0.38 TCGA-33-6738-01 7 27150089 27150089 G T HOXA3 Missense_Mutation p.S57R 0.25 tolerated(0.46) possibly_damaging(0.594) TCGA-33-6738-01 7 72657418 72657418 C A GTF2IRD2P1 RNA 0.33 TCGA-33-6738-01 7 72657584 72657584 G A GTF2IRD2P1 RNA 0.22 TCGA-33-6738-01 7 90356064 90356064 T - CDK14 Frame_Shift_Del p.F85Lfs*39 0.21 TCGA-33-6738-01 7 93065308 93065308 C A CALCR Missense_Mutation p.G403W 0.22 deleterious(0) probably_damaging(0.999) TCGA-33-6738-01 7 98643393 98643393 G A SMURF1 Missense_Mutation p.P421L 0.29 deleterious(0) possibly_damaging(0.853) TCGA-33-6738-01 8 10102630 10102630 G T MSRA Missense_Mutation p.W76C 0.24 deleterious(0) probably_damaging(1) TCGA-33-6738-01 8 105441894 105441894 G T DPYS Missense_Mutation p.L277I 0.28 tolerated(0.06) probably_damaging(0.999) TCGA-33-6738-01 8 116631694 116631694 T A TRPS1 Missense_Mutation p.N211Y 0.21 deleterious_low_confidence(0) possibly_damaging(0.61) TCGA-33-6738-01 8 11995766 11995766 A T USP17L2 Silent p.T168T 0.12 TCGA-33-6738-01 8 120793397 120793397 G C TAF2 Missense_Mutation p.P717A 0.26 deleterious(0.01) possibly_damaging(0.883) TCGA-33-6738-01 8 13356815 13356819 CATTT TATCG DLC1 Missense_Mutation p.QNE254HDK 0.22 TCGA-33-6738-01 8 139145039 139145039 G A FAM135B Missense_Mutation p.P1340S 0.24 deleterious(0) possibly_damaging(0.771) TCGA-33-6738-01 8 139706767 139706767 C A COL22A1 Missense_Mutation p.G895V 0.14 probably_damaging(1) TCGA-33-6738-01 8 143823322 143823322 T C SLURP1 Missense_Mutation p.Y26C 0.23 deleterious(0) probably_damaging(0.934) TCGA-33-6738-01 8 144391589 144391589 G C TOP1MT 3'UTR 0.14 TCGA-33-6738-01 8 144461485 144461485 G A RHPN1 Missense_Mutation p.G251E 0.45 deleterious(0) probably_damaging(1) TCGA-33-6738-01 8 37693242 37693242 T A GPR124 Silent p.P668P 0.49 TCGA-33-6738-01 8 42591874 42591874 T A CHRNB3 3'UTR 0.12 TCGA-33-6738-01 8 54141848 54141848 C T OPRK1 3'UTR 0.13 TCGA-33-6738-01 8 82583233 82583233 T C IMPA1 Silent p.P228P 0.18 TCGA-33-6738-01 9 107289083 107289083 C A OR13C4 Missense_Mutation p.M136I 0.40 deleterious(0.03) benign(0.008) TCGA-33-6738-01 9 112899584 112899584 A G PALM2-AKAP2 Missense_Mutation p.Y587C 0.29 tolerated(0.09) probably_damaging(1) TCGA-33-6738-01 9 120475717 120475717 G C TLR4 Missense_Mutation p.M437I 0.48 tolerated(0.44) benign(0.011) TCGA-33-6738-01 9 125023668 125023668 T C RBM18 Missense_Mutation p.K35R 0.39 tolerated(1) benign(0.003) TCGA-33-6738-01 9 125239839 125239839 A G OR1J1 Missense_Mutation p.Y123H 0.34 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-33-6738-01 9 126136903 126136903 C T CRB2 Silent p.L1145L 0.35 TCGA-33-6738-01 9 126783390 126783398 ACGAAAACG - LHX2 In_Frame_Del p.E248_D250del 0.15 TCGA-33-6738-01 9 137660292 137660292 G T COL5A1 Missense_Mutation p.G757C 0.37 unknown(0) TCGA-33-6738-01 9 140347632 140347632 C A NSMF Missense_Mutation p.S308I 0.38 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-33-6738-01 9 18675883 18675883 G A ADAMTSL1 Missense_Mutation p.D372N 0.32 deleterious(0) probably_damaging(1) TCGA-33-6738-01 9 18928630 18928630 G A FAM154A Missense_Mutation p.P282L 0.34 tolerated(0.18) possibly_damaging(0.654) TCGA-33-6738-01 9 34557960 34557960 G A CNTFR Silent p.L114L 0.48 TCGA-33-6738-01 9 86900275 86900275 C A SLC28A3 Silent p.V544V 0.25 TCGA-33-6738-01 9 96238536 96238536 A T FAM120A Splice_Site p.X241_splice 0.36 TCGA-33-6738-01 X 102318069 102318069 A T BEX1 Missense_Mutation p.V45E 0.44 tolerated(0.84) possibly_damaging(0.908) TCGA-33-6738-01 X 119760780 119760780 C T C1GALT1C1 Missense_Mutation p.S81N 0.46 tolerated(0.47) benign(0.066) TCGA-33-6738-01 X 12939521 12939521 G C TLR8 Missense_Mutation p.D788H 0.49 tolerated(0.12) benign(0.019) TCGA-33-6738-01 X 135428437 135428437 G A GPR112 Missense_Mutation p.V858M 0.16 tolerated(0.06) possibly_damaging(0.467) TCGA-33-6738-01 X 13764441 13764441 A T OFD1 Missense_Mutation p.E174V 0.62 deleterious(0) probably_damaging(0.979) TCGA-33-6738-01 X 137717745 137717745 C A FGF13 Missense_Mutation p.M168I 0.57 tolerated(0.16) benign(0.064) TCGA-33-6738-01 X 153278078 153278078 A G IRAK1 Missense_Mutation p.I661T 0.06 deleterious(0) benign(0.14) TCGA-33-6738-01 X 30237627 30237627 T C MAGEB2 Silent p.A310A 0.55 TCGA-33-6738-01 X 43634510 43634510 A T MAOB Missense_Mutation p.Y383N 0.71 deleterious(0) probably_damaging(0.997) TCGA-33-6738-01 X 47774636 47774636 G C ZNF81 Missense_Mutation p.K197N 0.30 tolerated(0.08) benign(0.042) TCGA-33-6738-01 X 48759773 48759773 C T PQBP1 Missense_Mutation p.P186S 0.21 deleterious(0) probably_damaging(0.998) TCGA-33-6738-01 X 48887573 48887573 G A TFE3 3'UTR 0.44 TCGA-33-6738-01 X 50054037 50054037 C T CCNB3 Silent p.T956T 0.62 TCGA-33-6738-01 X 55051258 55051258 G C ALAS2 Missense_Mutation p.A66G 0.45 deleterious(0.04) benign(0.169) TCGA-33-6738-01 X 72433083 72433083 G C NAP1L2 Missense_Mutation p.Q416E 0.09 tolerated_low_confidence(0.35) benign(0.031) TCGA-33-6738-01 X 74494276 74494276 G A UPRT Missense_Mutation p.E63K 0.18 tolerated_low_confidence(0.23) benign(0.077) TCGA-33-6738-01 X 79978217 79978217 C T BRWD3 Missense_Mutation p.D574N 0.20 deleterious(0) probably_damaging(1) TCGA-33-6738-01 X 86919788 86919788 G C KLHL4 Missense_Mutation p.W650C 0.42 deleterious(0) probably_damaging(1) TCGA-33-A4WN-01 10 118360697 118360697 G T PNLIPRP1 Missense_Mutation p.E349D 0.14 tolerated(1) benign(0) TCGA-33-A4WN-01 10 12595228 12595228 G A CAMK1D Missense_Mutation p.A33T 0.17 deleterious(0.05) possibly_damaging(0.681) TCGA-33-A4WN-01 10 18122643 18122643 G A MRC1 Missense_Mutation p.S218N 0.16 tolerated(0.47) benign(0.003) TCGA-33-A4WN-01 10 32306146 32306146 G C KIF5B Missense_Mutation p.Q896E 0.15 tolerated(0.24) benign(0.001) TCGA-33-A4WN-01 10 50944113 50944113 G A OGDHL Silent p.I955I 0.10 TCGA-33-A4WN-01 10 55582339 55582339 T A PCDH15 Missense_Mutation p.E1718V 0.15 deleterious_low_confidence(0) possibly_damaging(0.544) TCGA-33-A4WN-01 10 70546369 70546369 C G CCAR1 Missense_Mutation p.Q934E 0.13 deleterious(0.01) unknown(0) TCGA-33-A4WN-01 10 71835489 71835489 G A H2AFY2 Silent p.V25V 0.11 TCGA-33-A4WN-01 10 72489913 72489913 G A ADAMTS14 Missense_Mutation p.R337H 0.21 deleterious(0.04) possibly_damaging(0.479) TCGA-33-A4WN-01 10 82122791 82122791 G C DYDC2 Missense_Mutation p.E92Q 0.20 deleterious(0.02) possibly_damaging(0.728) TCGA-33-A4WN-01 10 93726452 93726452 A G BTAF1 Missense_Mutation p.I530V 0.14 tolerated(0.16) benign(0.265) TCGA-33-A4WN-01 10 99133372 99133372 G T RRP12 Nonsense_Mutation p.C662* 0.22 TCGA-33-A4WN-01 11 100169958 100169958 G C CNTN5 Missense_Mutation p.G817A 0.16 deleterious(0.02) probably_damaging(0.958) TCGA-33-A4WN-01 11 116660791 116660791 G A APOA5 3'UTR 0.21 TCGA-33-A4WN-01 11 119230321 119230321 C T USP2 Missense_Mutation p.R292K 0.18 tolerated(0.1) benign(0.024) TCGA-33-A4WN-01 11 125791243 125791243 G T DDX25 Silent p.L453L 0.27 TCGA-33-A4WN-01 11 18266858 18266858 T G SAA2 3'UTR 0.26 TCGA-33-A4WN-01 11 20099636 20099636 A T NAV2 Missense_Mutation p.E1778V 0.14 deleterious(0) probably_damaging(0.997) TCGA-33-A4WN-01 11 51411454 51411454 G A OR4A5 Silent p.L314L 0.19 TCGA-33-A4WN-01 11 55432857 55432857 C A OR4C6 Nonsense_Mutation p.S72* 0.19 TCGA-33-A4WN-01 11 57958145 57958145 C G OR9Q2 Missense_Mutation p.F61L 0.21 deleterious(0.01) possibly_damaging(0.76) TCGA-33-A4WN-01 11 62458815 62458815 C T BSCL2 Silent p.V314V 0.12 TCGA-33-A4WN-01 11 66372840 66372840 G C CCS Missense_Mutation p.D174H 0.24 deleterious(0.01) possibly_damaging(0.807) TCGA-33-A4WN-01 11 73021566 73021566 G A ARHGEF17 Missense_Mutation p.R628Q 0.28 tolerated_low_confidence(0.56) benign(0) TCGA-33-A4WN-01 11 77411765 77411765 C A RSF1 Splice_Site p.X836_splice 0.14 TCGA-33-A4WN-01 11 85345230 85345230 G A TMEM126B Missense_Mutation p.D102N 0.13 tolerated(0.31) benign(0.22) TCGA-33-A4WN-01 11 93528103 93528103 G T MED17 Missense_Mutation p.A297S 0.20 tolerated(0.07) benign(0.282) TCGA-33-A4WN-01 12 113447260 113447260 G A OAS2 Intron 0.40 TCGA-33-A4WN-01 12 122064950 122064950 C T ORAI1 Silent p.F101F 0.20 TCGA-33-A4WN-01 12 22402008 22402008 A G ST8SIA1 Silent p.S172S 0.16 TCGA-33-A4WN-01 12 28460680 28460682 CAG - CCDC91 In_Frame_Del p.Q192del 0.10 TCGA-33-A4WN-01 12 4872552 4872552 G A GALNT8 Missense_Mutation p.G498E 0.19 deleterious(0) probably_damaging(0.982) TCGA-33-A4WN-01 12 56525268 56525268 G C ESYT1 Missense_Mutation p.G241A 0.15 deleterious(0) probably_damaging(1) TCGA-33-A4WN-01 12 58131312 58131312 C T AGAP2 Missense_Mutation p.A240T 0.27 tolerated_low_confidence(0.21) benign(0) TCGA-33-A4WN-01 12 64199172 64199172 C T TMEM5 Missense_Mutation p.S301L 0.19 tolerated(0.26) benign(0.003) TCGA-33-A4WN-01 12 83289894 83289894 A G TMTC2 Missense_Mutation p.T318A 0.19 tolerated(1) benign(0.002) TCGA-33-A4WN-01 12 9261952 9261952 G C A2M Missense_Mutation p.I241M 0.12 deleterious(0.01) benign(0.094) TCGA-33-A4WN-01 12 99059512 99059512 C G APAF1 Missense_Mutation p.I379M 0.15 tolerated(0.31) benign(0.083) TCGA-33-A4WN-01 13 101320940 101320940 G A TMTC4 Missense_Mutation p.P38S 0.26 tolerated(0.47) benign(0.002) TCGA-33-A4WN-01 13 101756933 101756933 G A NALCN Missense_Mutation p.S902F 0.33 deleterious(0) probably_damaging(0.99) TCGA-33-A4WN-01 13 102521162 102521162 T A FGF14 Silent p.I112I 0.23 TCGA-33-A4WN-01 13 73649905 73649905 G C KLF5 Missense_Mutation p.E419Q 0.19 deleterious(0) probably_damaging(0.988) TCGA-33-A4WN-01 14 20710969 20710969 G C OR11H4 Missense_Mutation p.D7H 0.11 tolerated_low_confidence(0.09) benign(0.001) TCGA-33-A4WN-01 14 21468002 21468002 G C SLC39A2 Missense_Mutation p.E73Q 0.22 tolerated(0.28) benign(0.15) TCGA-33-A4WN-01 14 22740412 22740412 G T TRAV38-1 Missense_Mutation p.D106Y 0.29 deleterious(0) probably_damaging(1) TCGA-33-A4WN-01 14 36207747 36207747 A G RALGAPA1 Missense_Mutation p.I520T 0.23 deleterious(0) benign(0.003) TCGA-33-A4WN-01 15 53908155 53908155 G T WDR72 Missense_Mutation p.L750M 0.21 tolerated(0.23) possibly_damaging(0.492) TCGA-33-A4WN-01 15 54306345 54306345 A C UNC13C Missense_Mutation p.E415D 0.10 tolerated_low_confidence(0.21) benign(0.008) TCGA-33-A4WN-01 15 62217731 62217731 G C VPS13C Missense_Mutation p.S2178C 0.20 deleterious(0) probably_damaging(0.921) TCGA-33-A4WN-01 15 67496394 67496394 T A AAGAB Nonsense_Mutation p.K270* 0.27 TCGA-33-A4WN-01 15 75503126 75503126 C G C15orf39 Nonsense_Mutation p.S938* 0.19 TCGA-33-A4WN-01 15 81592150 81592150 C A IL16 Nonsense_Mutation p.S828* 0.15 TCGA-33-A4WN-01 15 83805474 83805474 T A TM6SF1 3'UTR 0.12 TCGA-33-A4WN-01 15 86800204 86800204 G T AGBL1 Missense_Mutation p.V240F 0.21 deleterious(0.03) benign(0.223) TCGA-33-A4WN-01 15 89402172 89402172 C G ACAN Missense_Mutation p.A2119G 0.09 tolerated(0.31) benign(0.263) TCGA-33-A4WN-01 15 90616306 90616306 G T ZNF710 Missense_Mutation p.V488L 0.24 tolerated(0.13) benign(0.162) TCGA-33-A4WN-01 16 11063123 11063123 C T CLEC16A Missense_Mutation p.S150L 0.19 deleterious(0) probably_damaging(0.997) TCGA-33-A4WN-01 16 2282778 2282778 C G E4F1 Missense_Mutation p.S251C 0.20 deleterious(0.04) possibly_damaging(0.617) TCGA-33-A4WN-01 16 24820775 24820775 T A TNRC6A Missense_Mutation p.S1549T 0.28 tolerated(0.05) benign(0.2) TCGA-33-A4WN-01 16 2546294 2546294 G A RP11-20I23.1 Missense_Mutation p.A49T 0.12 tolerated(0.9) benign(0.002) TCGA-33-A4WN-01 16 31470928 31470928 G A ARMC5 Missense_Mutation p.G28D 0.17 deleterious(0.04) unknown(0) TCGA-33-A4WN-01 16 77317958 77317958 G A ADAMTS18 Silent p.S1187S 0.20 TCGA-33-A4WN-01 16 84031878 84031878 G A NECAB2 Silent p.L306L 0.17 TCGA-33-A4WN-01 17 10233735 10233735 G T MYH13 Silent p.R802R 0.36 TCGA-33-A4WN-01 17 10297761 10297761 C G MYH8 Missense_Mutation p.Q1657H 0.38 deleterious(0.01) probably_damaging(0.961) TCGA-33-A4WN-01 17 29653027 29653027 C T NF1 Silent p.S1675S 0.18 TCGA-33-A4WN-01 17 37884226 37884226 C T ERBB2 Missense_Mutation p.P1233S 0.22 tolerated(0.18) benign(0.01) TCGA-33-A4WN-01 17 43332807 43332807 G - SPATA32 Frame_Shift_Del p.L248Wfs*17 0.15 TCGA-33-A4WN-01 17 46057956 46057956 C G CDK5RAP3 Intron 0.13 TCGA-33-A4WN-01 17 46621966 46621966 G T HOXB2 Missense_Mutation p.S103Y 0.21 deleterious(0) probably_damaging(0.979) TCGA-33-A4WN-01 17 51901387 51901387 G T KIF2B Silent p.L331L 0.12 TCGA-33-A4WN-01 17 56358189 56358189 T A MPO 5'UTR 0.35 TCGA-33-A4WN-01 17 59958392 59958392 G A INTS2 Missense_Mutation p.H752Y 0.07 tolerated(1) benign(0.001) TCGA-33-A4WN-01 17 61566065 61566065 G T ACE Nonsense_Mutation p.E788* 0.13 TCGA-33-A4WN-01 17 62796152 62796152 C G PLEKHM1P RNA 0.17 TCGA-33-A4WN-01 17 67092899 67092899 G A ABCA6 Missense_Mutation p.S1055F 0.24 deleterious(0) probably_damaging(0.998) TCGA-33-A4WN-01 17 68128629 68128629 A T KCNJ16 Missense_Mutation p.Y134F 0.10 deleterious(0.01) probably_damaging(0.993) TCGA-33-A4WN-01 17 73274282 73274282 G A SLC25A19 Silent p.S198S 0.29 TCGA-33-A4WN-01 17 73658674 73658674 G C RECQL5 Missense_Mutation p.P219R 0.16 deleterious(0) probably_damaging(0.942) TCGA-33-A4WN-01 17 7577548 7577548 C A TP53 Missense_Mutation p.G245C 0.38 deleterious(0) probably_damaging(1) TCGA-33-A4WN-01 17 78061848 78061848 G A CCDC40 Silent p.L886L 0.21 TCGA-33-A4WN-01 18 22804483 22804483 C A ZNF521 Silent p.V1133V 0.15 TCGA-33-A4WN-01 18 34850878 34850878 C A CELF4 Missense_Mutation p.G318C 0.12 tolerated(0.06) possibly_damaging(0.841) TCGA-33-A4WN-01 18 50731678 50731678 G A DCC Missense_Mutation p.G556S 0.12 tolerated(0.07) possibly_damaging(0.878) TCGA-33-A4WN-01 18 55144043 55144043 T C ONECUT2 3'UTR 0.33 TCGA-33-A4WN-01 18 59206280 59206280 G A CDH20 Missense_Mutation p.V478I 0.21 tolerated(0.11) possibly_damaging(0.466) TCGA-33-A4WN-01 18 66564825 66564825 A C CCDC102B Intron 0.15 TCGA-33-A4WN-01 18 6950964 6950964 C T LAMA1 Silent p.S2738S 0.17 TCGA-33-A4WN-01 18 70502481 70502481 C A NETO1 Intron 0.25 TCGA-33-A4WN-01 19 10624587 10624587 C A S1PR5 Silent p.S367S 0.23 TCGA-33-A4WN-01 19 12874058 12874058 G T HOOK2 3'UTR 0.11 TCGA-33-A4WN-01 19 13873738 13873738 G A CCDC130 Silent p.P349P 0.20 TCGA-33-A4WN-01 19 14006222 14006222 G C C19orf57 Missense_Mutation p.Q57E 0.17 tolerated(1) benign(0.388) TCGA-33-A4WN-01 19 22585670 22585670 C G ZNF98 Missense_Mutation p.K58N 0.13 tolerated(0.11) probably_damaging(0.95) TCGA-33-A4WN-01 19 23845955 23845955 C G ZNF675 Silent p.L3L 0.19 TCGA-33-A4WN-01 19 44516570 44516570 G C ZNF230 3'UTR 0.21 TCGA-33-A4WN-01 19 5131287 5131287 C T KDM4B Missense_Mutation p.L506F 0.24 possibly_damaging(0.86) TCGA-33-A4WN-01 19 52084739 52084739 G T ZNF175 Missense_Mutation p.M56I 0.11 deleterious(0.01) benign(0.287) TCGA-33-A4WN-01 19 53058195 53058195 G A ZNF808 Missense_Mutation p.E676K 0.16 tolerated(0.07) benign(0.393) TCGA-33-A4WN-01 19 53303556 53303556 C A ZNF28 Missense_Mutation p.Q514H 0.19 tolerated(0.14) benign(0.364) TCGA-33-A4WN-01 19 53645621 53645621 C T ZNF347 Missense_Mutation p.G155R 0.12 tolerated(0.23) benign(0.302) TCGA-33-A4WN-01 19 54782273 54782273 G A LILRB2 Missense_Mutation p.R367C 0.16 tolerated(0.09) benign(0.077) TCGA-33-A4WN-01 19 5696761 5696761 A G LONP1 Missense_Mutation p.Y565H 0.17 deleterious(0) probably_damaging(0.989) TCGA-33-A4WN-01 19 57133983 57133983 G A ZNF71 Missense_Mutation p.C443Y 0.22 deleterious(0) probably_damaging(0.998) TCGA-33-A4WN-01 19 57985093 57985093 T A ZNF772 Missense_Mutation p.H340L 0.22 deleterious(0) probably_damaging(0.996) TCGA-33-A4WN-01 19 58117863 58117863 G A ZNF530 Missense_Mutation p.E324K 0.23 tolerated(0.41) benign(0.237) TCGA-33-A4WN-01 19 8590360 8590360 C G MYO1F Intron 0.15 TCGA-33-A4WN-01 19 9063428 9063428 C A MUC16 Silent p.T8006T 0.10 TCGA-33-A4WN-01 1 102290596 102290596 C A OLFM3 Missense_Mutation p.C193F 0.09 tolerated(0.05) probably_damaging(0.991) TCGA-33-A4WN-01 1 10523622 10523622 G C DFFA Missense_Mutation p.A166G 0.16 tolerated(0.14) benign(0.022) TCGA-33-A4WN-01 1 117632756 117632756 C A TTF2 Silent p.R808R 0.18 TCGA-33-A4WN-01 1 150444371 150444371 G T RPRD2 Missense_Mutation p.A983S 0.44 tolerated_low_confidence(0.6) benign(0.015) TCGA-33-A4WN-01 1 150936868 150936868 G A CERS2 3'Flank 0.14 TCGA-33-A4WN-01 1 151143997 151143997 A G TMOD4 Missense_Mutation p.L213P 0.45 deleterious(0) probably_damaging(0.998) TCGA-33-A4WN-01 1 151491356 151491356 G A CGN Missense_Mutation p.D121N 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-33-A4WN-01 1 151491357 151491357 A T CGN Missense_Mutation p.D121V 0.16 deleterious(0.01) probably_damaging(1) TCGA-33-A4WN-01 1 158639233 158639233 T C SPTA1 Missense_Mutation p.K600E 0.15 tolerated(1) probably_damaging(0.999) TCGA-33-A4WN-01 1 158670415 158670415 G A OR6K2 Nonsense_Mutation p.Q10* 0.13 TCGA-33-A4WN-01 1 158724932 158724932 G T OR6K6 Missense_Mutation p.M109I 0.54 deleterious(0.03) benign(0.109) TCGA-33-A4WN-01 1 167874240 167874240 C G ADCY10 Missense_Mutation p.D47H 0.17 tolerated(0.25) probably_damaging(1) TCGA-33-A4WN-01 1 173754316 173754316 G C KLHL20 Missense_Mutation p.M587I 0.08 deleterious(0) probably_damaging(0.969) TCGA-33-A4WN-01 1 175097182 175097182 A T TNN Silent p.G1020G 0.36 TCGA-33-A4WN-01 1 201687561 201687561 C T NAV1 Missense_Mutation p.R302C 0.14 deleterious(0) probably_damaging(0.984) TCGA-33-A4WN-01 1 218475812 218475812 G C RRP15 Missense_Mutation p.E106Q 0.14 tolerated(0.32) benign(0.026) TCGA-33-A4WN-01 1 228471382 228471382 C A OBSCN Silent p.L3401L 0.11 TCGA-33-A4WN-01 1 237804254 237804254 C A RYR2 Missense_Mutation p.F2391L 0.34 probably_damaging(0.998) TCGA-33-A4WN-01 1 248487346 248487346 G T OR2M7 Silent p.A175A 0.44 TCGA-33-A4WN-01 1 24981552 24981552 C T SRRM1 Missense_Mutation p.T416I 0.20 unknown(0) TCGA-33-A4WN-01 1 25735242 25735242 C T RHCE Silent p.Q89Q 0.12 TCGA-33-A4WN-01 1 3102887 3102887 C T PRDM16 Missense_Mutation p.P79L 0.10 deleterious(0) possibly_damaging(0.855) TCGA-33-A4WN-01 1 54606943 54606943 C T CDCP2 Silent p.E197E 0.15 TCGA-33-A4WN-01 1 57395012 57395012 G T C8B 3'UTR 0.15 TCGA-33-A4WN-01 1 63286881 63286881 G C ATG4C Splice_Site p.X266_splice 0.11 TCGA-33-A4WN-01 1 86172186 86172186 C G ZNHIT6 Missense_Mutation p.E221Q 0.08 deleterious(0.02) possibly_damaging(0.877) TCGA-33-A4WN-01 20 19665972 19665972 G A SLC24A3 Missense_Mutation p.D431N 0.12 tolerated(0.3) benign(0.001) TCGA-33-A4WN-01 20 30674563 30674563 T G HCK Missense_Mutation p.V323G 0.25 deleterious(0.01) probably_damaging(1) TCGA-33-A4WN-01 20 33589749 33589749 A G MYH7B Splice_Site p.X1935_splice 0.12 TCGA-33-A4WN-01 20 3543021 3543021 G T ATRN Missense_Mutation p.V516F 0.19 deleterious(0.02) probably_damaging(0.931) TCGA-33-A4WN-01 20 43945356 43945356 G A RBPJL Silent p.P437P 0.19 TCGA-33-A4WN-01 20 44519380 44519380 C T NEURL2 Missense_Mutation p.G84D 0.12 deleterious(0) probably_damaging(1) TCGA-33-A4WN-01 22 17072252 17072252 C T CCT8L2 Missense_Mutation p.D397N 0.17 tolerated(0.63) benign(0.064) TCGA-33-A4WN-01 22 17449187 17449187 C A GAB4 Splice_Site p.X341_splice 0.18 TCGA-33-A4WN-01 22 19121958 19121958 C A DGCR14 Missense_Mutation p.M394I 0.23 deleterious(0.01) possibly_damaging(0.469) TCGA-33-A4WN-01 22 38823685 38823685 G A KCNJ4 Silent p.I151I 0.17 TCGA-33-A4WN-01 22 50869761 50869761 G C PPP6R2 Missense_Mutation p.E430Q 0.14 tolerated(0.22) benign(0.06) TCGA-33-A4WN-01 2 11053260 11053260 G T KCNF1 Missense_Mutation p.E236D 0.14 deleterious(0) probably_damaging(0.999) TCGA-33-A4WN-01 2 113404359 113404359 G A SLC20A1 5'UTR 0.13 TCGA-33-A4WN-01 2 122273319 122273319 T C CLASP1 Missense_Mutation p.N189S 0.18 tolerated(0.48) benign(0.052) TCGA-33-A4WN-01 2 138413230 138413230 G A THSD7B Missense_Mutation p.G1372R 0.25 deleterious(0) unknown(0) TCGA-33-A4WN-01 2 162881375 162881375 T G DPP4 Missense_Mutation p.N321T 0.22 deleterious(0) probably_damaging(0.947) TCGA-33-A4WN-01 2 163000595 163000595 C G GCG Missense_Mutation p.D160H 0.10 deleterious(0) probably_damaging(0.999) TCGA-33-A4WN-01 2 163393474 163393474 C T KCNH7 Missense_Mutation p.E142K 0.08 tolerated(0.13) benign(0.015) TCGA-33-A4WN-01 2 165950888 165950888 G T SCN3A Missense_Mutation p.P1511Q 0.19 deleterious(0) possibly_damaging(0.905) TCGA-33-A4WN-01 2 166237235 166237235 A T SCN2A Missense_Mutation p.K1481M 0.13 deleterious(0) benign(0.292) TCGA-33-A4WN-01 2 166848166 166848166 C T SCN1A Silent p.K1873K 0.14 TCGA-33-A4WN-01 2 1670016 1670016 C T PXDN Missense_Mutation p.V421I 0.15 tolerated(1) benign(0.004) TCGA-33-A4WN-01 2 174086198 174086198 T C MLTK Intron 0.14 TCGA-33-A4WN-01 2 178098968 178098968 T C NFE2L2 Missense_Mutation p.Q26R 0.16 deleterious(0) probably_damaging(0.999) TCGA-33-A4WN-01 2 179424218 179424218 G C TTN Missense_Mutation p.H28881D 0.16 TCGA-33-A4WN-01 2 179730534 179730534 C T CCDC141 Missense_Mutation p.R895H 0.19 tolerated(0.36) benign(0.002) TCGA-33-A4WN-01 2 21229295 21229295 C T APOB Missense_Mutation p.S3482N 0.13 benign(0.002) TCGA-33-A4WN-01 2 215013969 215013969 G A SPAG16 Missense_Mutation p.E567K 0.16 tolerated(0.81) benign(0.039) TCGA-33-A4WN-01 2 216298175 216298175 G A FN1 Missense_Mutation p.T96I 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-33-A4WN-01 2 224463686 224463686 C A SCG2 Silent p.L105L 0.20 TCGA-33-A4WN-01 2 32476474 32476474 G A NLRC4 Silent p.T153T 0.15 TCGA-33-A4WN-01 2 64779272 64779272 G C AFTPH Missense_Mutation p.D222H 0.16 deleterious(0.02) benign(0.192) TCGA-33-A4WN-01 2 75879316 75879316 G A MRPL19 Silent p.L90L 0.14 TCGA-33-A4WN-01 2 80085293 80085293 C A CTNNA2 Silent p.S151S 0.11 TCGA-33-A4WN-01 2 80085294 80085294 C A CTNNA2 Missense_Mutation p.H152N 0.11 tolerated(0.3) benign(0.012) TCGA-33-A4WN-01 2 86979087 86979087 C T RMND5A Silent p.L118L 0.24 TCGA-33-A4WN-01 2 88422593 88422593 T C FABP1 Missense_Mutation p.R122G 0.16 deleterious(0) probably_damaging(0.999) TCGA-33-A4WN-01 2 90212001 90212001 G A IGKV3D-11 Silent p.L31L 0.22 TCGA-33-A4WN-01 3 119533889 119533889 G A NR1I2 Silent p.L325L 0.16 TCGA-33-A4WN-01 3 139071513 139071516 ATAG - MRPS22 Frame_Shift_Del p.D254Nfs*22 0.14 TCGA-33-A4WN-01 3 148905969 148905969 G A CP Silent p.F578F 0.09 TCGA-33-A4WN-01 3 150421678 150421678 T C FAM194A Missense_Mutation p.H3R 0.09 deleterious_low_confidence(0) benign(0.402) TCGA-33-A4WN-01 3 154898260 154898260 A T MME 3'UTR 0.49 TCGA-33-A4WN-01 3 167184927 167184927 G A SERPINI2 Nonsense_Mutation p.Q132* 0.11 TCGA-33-A4WN-01 3 170587973 170587973 G C RPL22L1 5'UTR 0.09 TCGA-33-A4WN-01 3 170587980 170587980 G C RPL22L1 5'UTR 0.09 TCGA-33-A4WN-01 3 178936073 178936073 C T PIK3CA Missense_Mutation p.P539S 0.33 tolerated(0.06) possibly_damaging(0.796) TCGA-33-A4WN-01 3 178936078 178936078 C G PIK3CA Silent p.L540L 0.31 TCGA-33-A4WN-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.29 deleterious(0.04) probably_damaging(0.96) TCGA-33-A4WN-01 3 178937826 178937826 C G PIK3CA Missense_Mutation p.F667L 0.29 tolerated(0.3) benign(0.225) TCGA-33-A4WN-01 3 183645190 183645190 C T ABCC5 Silent p.E1325E 0.10 TCGA-33-A4WN-01 3 38739529 38739529 C A SCN10A Missense_Mutation p.A1728S 0.29 deleterious(0) probably_damaging(0.999) TCGA-33-A4WN-01 3 43122705 43122705 C G POMGNT2 Silent p.T73T 0.29 TCGA-33-A4WN-01 3 48414228 48414228 G A FBXW12 5'UTR 0.24 TCGA-33-A4WN-01 3 87309021 87309021 G T POU1F1 3'UTR 0.33 TCGA-33-A4WN-01 3 87309022 87309022 G T POU1F1 3'UTR 0.33 TCGA-33-A4WN-01 4 156831336 156831336 G - TDO2 Frame_Shift_Del p.E198Kfs*7 0.18 TCGA-33-A4WN-01 4 159644356 159644356 C T PPID Missense_Mutation p.V29I 0.43 tolerated(0.38) benign(0.006) TCGA-33-A4WN-01 4 71346914 71346914 A G MUC7 Silent p.V151V 0.31 TCGA-33-A4WN-01 4 87735821 87735821 C G PTPN13 3'UTR 0.44 TCGA-33-A4WN-01 4 94006159 94006159 G A GRID2 Missense_Mutation p.M86I 0.28 deleterious(0.03) possibly_damaging(0.864) TCGA-33-A4WN-01 5 107700659 107700659 C A FBXL17 Missense_Mutation p.S385I 0.14 deleterious(0.02) possibly_damaging(0.899) TCGA-33-A4WN-01 5 113831674 113831674 C A KCNN2 Missense_Mutation p.T512K 0.10 tolerated(0.55) probably_damaging(0.966) TCGA-33-A4WN-01 5 115783319 115783319 G A SEMA6A Missense_Mutation p.R695C 0.19 tolerated(0.09) probably_damaging(0.999) TCGA-33-A4WN-01 5 139682644 139682644 C A PFDN1 Silent p.V5V 0.13 TCGA-33-A4WN-01 5 156590073 156590073 G T FAM71B Silent p.T401T 0.17 TCGA-33-A4WN-01 5 172660191 172660191 G C NKX2-5 Missense_Mutation p.A119G 0.27 tolerated(0.38) benign(0.002) TCGA-33-A4WN-01 5 22078622 22078622 C T CDH12 Missense_Mutation p.G55D 0.51 deleterious(0.02) benign(0.26) TCGA-33-A4WN-01 5 41172339 41172339 C G C6 Missense_Mutation p.E427Q 0.07 tolerated(0.15) possibly_damaging(0.879) TCGA-33-A4WN-01 5 56777617 56777617 C T ACTBL2 Missense_Mutation p.M306I 0.21 deleterious_low_confidence(0.01) benign(0.039) TCGA-33-A4WN-01 5 75427568 75427568 G A SV2C 5'UTR 0.13 TCGA-33-A4WN-01 5 79029108 79029108 G A CMYA5 Missense_Mutation p.R1507H 0.12 benign(0) TCGA-33-A4WN-01 6 105298851 105298851 G C HACE1 Nonsense_Mutation p.S51* 0.16 TCGA-33-A4WN-01 6 112535138 112535138 T A LAMA4 Intron 0.20 TCGA-33-A4WN-01 6 112535152 112535152 G C LAMA4 Intron 0.19 TCGA-33-A4WN-01 6 117113929 117113929 G A GPRC6A Silent p.C719C 0.19 TCGA-33-A4WN-01 6 119295675 119295675 G C FAM184A Missense_Mutation p.L945V 0.16 tolerated(0.32) benign(0.269) TCGA-33-A4WN-01 6 149997299 149997299 T - LATS1 Intron 0.40 TCGA-33-A4WN-01 6 29430487 29430487 G C OR2H1 Missense_Mutation p.R314T 0.18 tolerated(0.17) benign(0) TCGA-33-A4WN-01 6 50011385 50011385 C T DEFB112 Missense_Mutation p.C82Y 0.15 deleterious(0) possibly_damaging(0.712) TCGA-33-A4WN-01 6 51735384 51735384 C T PKHD1 Missense_Mutation p.M2468I 0.14 tolerated(0.67) benign(0.001) TCGA-33-A4WN-01 6 55214922 55214922 C T GFRAL Silent p.L117L 0.13 TCGA-33-A4WN-01 6 74524791 74524791 G A CD109 Missense_Mutation p.A1286T 0.25 tolerated(0.57) benign(0.001) TCGA-33-A4WN-01 6 80717541 80717541 T C TTK Missense_Mutation p.V52A 0.23 tolerated(0.08) benign(0.297) TCGA-33-A4WN-01 6 90572882 90572882 A G CASP8AP2 RNA 0.14 TCGA-33-A4WN-01 7 103163934 103163934 T A RELN Missense_Mutation p.D2465V 0.18 deleterious(0.01) possibly_damaging(0.815) TCGA-33-A4WN-01 7 105401823 105401823 C T ATXN7L1 Intron 0.20 TCGA-33-A4WN-01 7 113518616 113518616 G C PPP1R3A Missense_Mutation p.S844C 0.16 tolerated(0.19) benign(0.03) TCGA-33-A4WN-01 7 11675923 11675923 C T THSD7A Missense_Mutation p.D286N 0.15 tolerated(0.79) benign(0.007) TCGA-33-A4WN-01 7 142566279 142566279 C T EPHB6 Nonsense_Mutation p.Q690* 0.20 TCGA-33-A4WN-01 7 150490398 150490398 A G TMEM176B Silent p.Y126Y 0.19 TCGA-33-A4WN-01 7 158540930 158540930 G A ESYT2 Silent p.F560F 0.20 TCGA-33-A4WN-01 7 17378800 17378800 C T AHR Missense_Mutation p.L451F 0.09 tolerated(0.15) benign(0.005) TCGA-33-A4WN-01 7 20199385 20199385 T A MACC1 Missense_Mutation p.Q200L 0.15 deleterious(0.03) possibly_damaging(0.776) TCGA-33-A4WN-01 7 21599218 21599218 T C DNAH11 Intron 0.18 TCGA-33-A4WN-01 7 25218904 25218904 G T C7orf31 Silent p.P8P 0.07 TCGA-33-A4WN-01 7 37355559 37355559 T A ELMO1 Missense_Mutation p.K28N 0.27 deleterious(0.01) benign(0.439) TCGA-33-A4WN-01 7 48315837 48315837 C G ABCA13 Missense_Mutation p.Q2192E 0.27 benign(0.03) TCGA-33-A4WN-01 7 5105069 5105069 C T RBAK Missense_Mutation p.S661F 0.14 tolerated(0.63) probably_damaging(0.999) TCGA-33-A4WN-01 7 6836438 6836438 C G RSPH10B2 Intron 0.56 TCGA-33-A4WN-01 7 73630314 73630314 G C LAT2 Silent p.S3S 0.13 TCGA-33-A4WN-01 8 101065058 101065058 G C RGS22 Missense_Mutation p.S554C 0.20 deleterious(0) possibly_damaging(0.84) TCGA-33-A4WN-01 8 113277642 113277642 C T CSMD3 Missense_Mutation p.R3229K 0.13 tolerated(1) benign(0) TCGA-33-A4WN-01 8 113960018 113960018 C A CSMD3 Splice_Site p.X503_splice 0.19 TCGA-33-A4WN-01 8 139164459 139164459 T A FAM135B Missense_Mutation p.L753F 0.15 deleterious(0) probably_damaging(0.999) TCGA-33-A4WN-01 8 139255280 139255280 C G FAM135B Missense_Mutation p.G192R 0.10 deleterious(0) possibly_damaging(0.786) TCGA-33-A4WN-01 8 41394699 41394699 G A GINS4 Missense_Mutation p.E62K 0.22 deleterious(0.05) benign(0.347) TCGA-33-A4WN-01 8 41557038 41557038 C G ANK1 Missense_Mutation p.E871D 0.09 tolerated(0.33) benign(0.001) TCGA-33-A4WN-01 8 70550807 70550807 G T SULF1 Silent p.T785T 0.21 TCGA-33-A4WN-01 8 71646041 71646041 C T XKR9 Silent p.I168I 0.18 TCGA-33-A4WN-01 9 108366559 108366559 C T FKTN Missense_Mutation p.P145S 0.22 deleterious(0) probably_damaging(0.992) TCGA-33-A4WN-01 9 119461077 119461077 C A TRIM32 Silent p.I352I 0.15 TCGA-33-A4WN-01 9 122000959 122000959 C T BRINP1 Missense_Mutation p.S220N 0.12 deleterious(0.01) benign(0.441) TCGA-33-A4WN-01 9 132515192 132515194 TGA - PTGES In_Frame_Del p.I33del 0.25 TCGA-33-A4WN-01 9 132719694 132719694 T G FNBP1 Missense_Mutation p.Q153P 0.18 tolerated(0.05) possibly_damaging(0.647) TCGA-33-A4WN-01 9 140057728 140057728 T A GRIN1 Missense_Mutation p.I781K 0.18 deleterious(0) probably_damaging(0.964) TCGA-33-A4WN-01 9 21974695 21974695 G C CDKN2A Nonsense_Mutation p.Y44* 0.21 TCGA-33-A4WN-01 9 33073642 33073642 T C SMU1 Missense_Mutation p.I63M 0.13 deleterious(0.01) benign(0.418) TCGA-33-A4WN-01 9 41963876 41963876 T C RP11-204M4.2 RNA 0.10 TCGA-33-A4WN-01 9 74970811 74970811 G A ZFAND5 3'UTR 0.14 TCGA-33-A4WN-01 9 90581967 90581967 C T CDK20 3'UTR 0.15 TCGA-33-A4WN-01 X 105451074 105451074 A T MUM1L1 Missense_Mutation p.D550V 0.40 deleterious(0.01) benign(0.178) TCGA-33-A4WN-01 X 105451075 105451075 C A MUM1L1 Missense_Mutation p.D550E 0.44 deleterious(0.01) possibly_damaging(0.87) TCGA-33-A4WN-01 X 13337941 13337941 T C ATXN3L Missense_Mutation p.H38R 0.54 tolerated(0.27) benign(0.009) TCGA-33-A4WN-01 X 142795541 142795541 G T SPANXN2 Missense_Mutation p.T46K 0.32 tolerated_low_confidence(0.77) benign(0.127) TCGA-33-A4WN-01 X 31222171 31222171 C T DMD Silent p.L3238L 0.60 TCGA-33-A4WN-01 X 56296692 56296692 C T KLF8 Missense_Mutation p.A279V 0.15 tolerated(0.1) benign(0.007) TCGA-33-A4WN-01 X 73964264 73964264 G T KIAA2022 Missense_Mutation p.A43D 0.50 deleterious_low_confidence(0.04) probably_damaging(0.929) TCGA-33-A4WN-01 X 91132550 91132550 G T PCDH11X Silent p.L437L 0.39 TCGA-33-A5GW-01 10 126097535 126097535 C A OAT Splice_Site p.X67_splice 0.31 TCGA-33-A5GW-01 10 64946074 64946074 C G JMJD1C Missense_Mutation p.D2214H 0.28 deleterious(0) probably_damaging(0.91) TCGA-33-A5GW-01 10 98411352 98411352 C T PIK3AP1 Missense_Mutation p.E257K 0.09 tolerated(0.62) benign(0.091) TCGA-33-A5GW-01 11 108173714 108173714 C A ATM Silent p.G1818G 0.36 TCGA-33-A5GW-01 11 113266799 113266799 G A ANKK1 Missense_Mutation p.M231I 0.36 tolerated(0.14) benign(0.082) TCGA-33-A5GW-01 11 123754010 123754010 G T TMEM225 Nonsense_Mutation p.C171* 0.30 TCGA-33-A5GW-01 11 123909195 123909195 G A OR10G7 Nonsense_Mutation p.Q172* 0.29 TCGA-33-A5GW-01 11 134238581 134238581 C T GLB1L2 Silent p.S311S 0.38 TCGA-33-A5GW-01 11 4471027 4471027 G A OR52K2 Missense_Mutation p.R153Q 0.41 deleterious(0) possibly_damaging(0.88) TCGA-33-A5GW-01 11 5153667 5153667 G C OR52A5 Missense_Mutation p.A69G 0.45 tolerated(0.34) benign(0.006) TCGA-33-A5GW-01 11 5247811 5247811 A G HBB Missense_Mutation p.F104S 0.15 deleterious(0) probably_damaging(1) TCGA-33-A5GW-01 11 5344778 5344778 A G OR51B2 Silent p.Y250Y 0.45 TCGA-33-A5GW-01 11 55681863 55681863 G C OR5W2 Missense_Mutation p.L66V 0.38 deleterious(0) probably_damaging(0.985) TCGA-33-A5GW-01 11 55904503 55904503 G A OR8J3 Missense_Mutation p.P231L 0.33 deleterious(0) benign(0.001) TCGA-33-A5GW-01 11 63994380 63994380 T G NUDT22 Missense_Mutation p.S86A 0.41 tolerated(0.45) benign(0.406) TCGA-33-A5GW-01 11 64884261 64884261 C A ZNHIT2 Nonsense_Mutation p.E289* 0.39 TCGA-33-A5GW-01 11 76253257 76253257 C T C11orf30 Intron 0.03 TCGA-33-A5GW-01 11 76868012 76868012 G C MYO7A Missense_Mutation p.E233Q 0.17 deleterious(0.02) probably_damaging(0.98) TCGA-33-A5GW-01 11 88337959 88337959 G T GRM5 Missense_Mutation p.L441M 0.31 tolerated(0.1) probably_damaging(0.979) TCGA-33-A5GW-01 12 101748876 101748876 C A UTP20 Missense_Mutation p.H1792N 0.09 tolerated(0.11) benign(0.313) TCGA-33-A5GW-01 12 110565247 110565247 A G IFT81 Missense_Mutation p.Y21C 0.69 deleterious(0) probably_damaging(0.927) TCGA-33-A5GW-01 12 117624340 117624340 C G FBXO21 Missense_Mutation p.E138Q 0.37 tolerated(0.27) benign(0.232) TCGA-33-A5GW-01 12 123812357 123812357 C A SBNO1 Missense_Mutation p.A479S 0.62 deleterious(0) probably_damaging(1) TCGA-33-A5GW-01 12 126135365 126135365 A C TMEM132B Missense_Mutation p.M589L 0.05 tolerated(1) benign(0.006) TCGA-33-A5GW-01 12 129293444 129293444 G A SLC15A4 Silent p.L383L 0.55 TCGA-33-A5GW-01 12 1943599 1943599 G A LRTM2 Silent p.E275E 0.45 TCGA-33-A5GW-01 12 48183111 48183111 G T HDAC7 Nonsense_Mutation p.S723* 0.24 TCGA-33-A5GW-01 12 49994127 49994127 C T FAM186B Silent p.P432P 0.15 TCGA-33-A5GW-01 12 56506721 56506721 A T PA2G4 3'UTR 0.43 TCGA-33-A5GW-01 12 7361197 7361197 T A PEX5 Silent p.P457P 0.34 TCGA-33-A5GW-01 12 8074146 8074146 C T SLC2A3 Missense_Mutation p.E452K 0.10 deleterious(0) probably_damaging(1) TCGA-33-A5GW-01 12 97137528 97137528 A T C12orf55 Missense_Mutation p.E2466V 0.36 deleterious(0) benign(0) TCGA-33-A5GW-01 13 113728790 113728790 G C MCF2L Missense_Mutation p.K343N 0.06 deleterious(0.05) benign(0.433) TCGA-33-A5GW-01 13 32911788 32911788 C G BRCA2 Nonsense_Mutation p.S1099* 0.64 TCGA-33-A5GW-01 13 84453915 84453915 C G SLITRK1 Missense_Mutation p.E576D 0.75 tolerated(0.6) benign(0.008) TCGA-33-A5GW-01 14 100172962 100172962 G C CYP46A1 Intron 0.04 TCGA-33-A5GW-01 14 20869165 20869165 C G TEP1 Silent p.A509A 0.76 TCGA-33-A5GW-01 14 45623132 45623132 C A FANCM Missense_Mutation p.Q354K 0.60 deleterious(0) benign(0.138) TCGA-33-A5GW-01 14 50647293 50647293 A G SOS2 Silent p.F322F 0.48 TCGA-33-A5GW-01 14 78205157 78205157 C G SNW1 Missense_Mutation p.R166P 0.40 deleterious(0.02) benign(0.04) TCGA-33-A5GW-01 14 91123581 91123581 C G TTC7B Silent p.L426L 0.22 TCGA-33-A5GW-01 14 93760552 93760552 C T BTBD7 Missense_Mutation p.E272K 0.05 tolerated(0.22) benign(0.129) TCGA-33-A5GW-01 15 100332205 100332205 T A AC090825.1 5'Flank 0.23 TCGA-33-A5GW-01 15 34137196 34137196 T A RYR3 Missense_Mutation p.L4477Q 0.37 probably_damaging(1) TCGA-33-A5GW-01 15 34295238 34295238 G A AVEN Missense_Mutation p.S147F 0.34 deleterious(0.01) benign(0.083) TCGA-33-A5GW-01 15 34295249 34295249 G A AVEN Silent p.V143V 0.30 TCGA-33-A5GW-01 15 35149138 35149138 G T AQR Missense_Mutation p.T1438N 0.41 tolerated_low_confidence(0.38) benign(0.005) TCGA-33-A5GW-01 15 42151111 42151111 C T SPTBN5 Missense_Mutation p.A2686T 0.31 benign(0.007) TCGA-33-A5GW-01 15 43818867 43818867 G C MAP1A Missense_Mutation p.E1732D 0.38 probably_damaging(0.995) TCGA-33-A5GW-01 15 43924397 43924397 C T CATSPER2 Missense_Mutation p.V521M 0.34 deleterious(0) possibly_damaging(0.681) TCGA-33-A5GW-01 15 50884491 50884491 T C TRPM7 Missense_Mutation p.H1314R 0.34 tolerated_low_confidence(0.41) benign(0) TCGA-33-A5GW-01 15 52844132 52844132 C T ARPP19 Silent p.%3D 0.20 TCGA-33-A5GW-01 15 75650902 75650902 C A MAN2C1 Silent p.R785R 0.44 TCGA-33-A5GW-01 15 78921382 78921382 T C CHRNB4 Missense_Mutation p.Q422R 0.33 tolerated(0.21) benign(0.259) TCGA-33-A5GW-01 15 83805481 83805481 G C TM6SF1 3'UTR 0.37 TCGA-33-A5GW-01 15 99672981 99672981 C T SYNM Silent p.I1471I 0.39 TCGA-33-A5GW-01 16 105530 105530 G C SNRNP25 Missense_Mutation p.K47N 0.41 deleterious(0) possibly_damaging(0.843) TCGA-33-A5GW-01 16 11009430 11009430 G T CIITA Silent p.L964L 0.38 TCGA-33-A5GW-01 16 2133709 2133709 C A TSC2 Silent p.V1299V 0.50 TCGA-33-A5GW-01 16 30777754 30777754 A T RNF40 Missense_Mutation p.M390L 0.36 deleterious(0.04) benign(0) TCGA-33-A5GW-01 16 31926463 31926463 A T ZNF267 Missense_Mutation p.N298I 0.40 deleterious(0.05) possibly_damaging(0.557) TCGA-33-A5GW-01 16 46782049 46782049 C G MYLK3 Missense_Mutation p.K19N 0.10 tolerated_low_confidence(0.06) possibly_damaging(0.649) TCGA-33-A5GW-01 16 5112576 5112576 C G C16orf89 Splice_Site p.X70_splice 0.06 TCGA-33-A5GW-01 16 57261336 57261336 A G RSPRY1 Missense_Mutation p.K415R 0.41 tolerated(0.65) benign(0.007) TCGA-33-A5GW-01 16 68289691 68289691 G T PLA2G15 Silent p.L175L 0.33 TCGA-33-A5GW-01 16 88872179 88872179 C T CDT1 Missense_Mutation p.A245V 0.19 tolerated(0.17) benign(0.081) TCGA-33-A5GW-01 17 10322024 10322024 C A MYH8 Missense_Mutation p.R150L 0.62 deleterious(0) possibly_damaging(0.815) TCGA-33-A5GW-01 17 10358049 10358049 G C MYH4 Missense_Mutation p.F838L 0.38 deleterious(0.01) probably_damaging(0.995) TCGA-33-A5GW-01 17 18219170 18219170 G A SMCR8 Missense_Mutation p.E23K 0.06 tolerated(0.35) possibly_damaging(0.725) TCGA-33-A5GW-01 17 26823479 26823479 C G SLC13A2 Missense_Mutation p.I543M 0.22 deleterious(0.01) probably_damaging(0.987) TCGA-33-A5GW-01 17 26823581 26823581 C T SLC13A2 Silent p.F577F 0.23 TCGA-33-A5GW-01 17 26965435 26965435 T A KIAA0100 Splice_Site p.X450_splice 0.49 TCGA-33-A5GW-01 17 30267340 30267340 A T SUZ12 Missense_Mutation p.N104Y 0.38 deleterious(0) possibly_damaging(0.903) TCGA-33-A5GW-01 17 30806374 30806374 G C PSMD11 Missense_Mutation p.E340Q 0.25 deleterious(0) probably_damaging(0.996) TCGA-33-A5GW-01 17 36483337 36483337 C T GPR179 Missense_Mutation p.G2039R 0.32 tolerated(0.21) benign(0.132) TCGA-33-A5GW-01 17 37903169 37903169 C G GRB7 3'UTR 0.08 TCGA-33-A5GW-01 17 38907306 38907306 G C KRT25 Missense_Mutation p.S286C 0.16 deleterious(0.01) benign(0.119) TCGA-33-A5GW-01 17 5462913 5462913 C T NLRP1 Missense_Mutation p.S368N 0.76 tolerated(0.78) benign(0.123) TCGA-33-A5GW-01 17 57297992 57297992 T C GDPD1 Missense_Mutation p.Y8H 0.38 deleterious(0.05) benign(0.181) TCGA-33-A5GW-01 17 6493122 6493122 G C KIAA0753 Missense_Mutation p.F921L 0.33 deleterious(0) probably_damaging(0.971) TCGA-33-A5GW-01 17 74097244 74097244 T C EXOC7 Intron 0.43 TCGA-33-A5GW-01 17 7579522 7579550 AGTGAACCATTGTTCAATATCGTCCGGGG - TP53 Frame_Shift_Del p.S46* 0.44 TCGA-33-A5GW-01 18 29625669 29625669 C G RNF125 Missense_Mutation p.H160D 0.60 deleterious(0.03) benign(0.332) TCGA-33-A5GW-01 19 10084474 10084474 C T COL5A3 Silent p.G1190G 0.06 TCGA-33-A5GW-01 19 1074801 1074801 C T HMHA1 Silent p.L386L 0.17 TCGA-33-A5GW-01 19 12462880 12462896 CATTCCTAAAAGGTGGA - ZNF442 Splice_Site p.X69_splice 0.24 TCGA-33-A5GW-01 19 14247279 14247279 C T ASF1B 5'UTR 0.06 TCGA-33-A5GW-01 19 16989464 16989464 G C SIN3B Missense_Mutation p.E1139Q 0.33 tolerated(0.2) benign(0.097) TCGA-33-A5GW-01 19 17056408 17056408 C G CPAMD8 Missense_Mutation p.R962T 0.38 tolerated(0.12) possibly_damaging(0.466) TCGA-33-A5GW-01 19 17611322 17611333 TGGGTCAGATCA - SLC27A1 In_Frame_Del p.V451_N455delinsD 0.18 TCGA-33-A5GW-01 19 17626995 17626995 C G PGLS Missense_Mutation p.S101C 0.24 tolerated(0.07) benign(0.306) TCGA-33-A5GW-01 19 22156096 22156096 G T ZNF208 Silent p.P580P 0.29 TCGA-33-A5GW-01 19 22939323 22939324 CA T ZNF99 3'Flank 0.19 TCGA-33-A5GW-01 19 22939940 22939940 A T ZNF99 3'Flank 0.42 TCGA-33-A5GW-01 19 30165155 30165155 A T PLEKHF1 Missense_Mutation p.T137S 0.42 tolerated(1) possibly_damaging(0.633) TCGA-33-A5GW-01 19 40354078 40354078 G C FCGBP 3'UTR 0.10 TCGA-33-A5GW-01 19 45975823 45975823 G C FOSB Missense_Mutation p.L190F 0.43 deleterious(0) possibly_damaging(0.849) TCGA-33-A5GW-01 19 48374703 48374703 T G SULT2A1 3'UTR 0.47 TCGA-33-A5GW-01 19 49142645 49142645 G C CA11 Missense_Mutation p.Q238E 0.05 tolerated(1) benign(0.042) TCGA-33-A5GW-01 19 49416319 49416319 C A NUCB1 Missense_Mutation p.R178S 0.39 deleterious(0) possibly_damaging(0.809) TCGA-33-A5GW-01 19 53271011 53271011 G A ZNF600 5'UTR 0.04 TCGA-33-A5GW-01 19 53987083 53987083 C T ZNF813 Missense_Mutation p.L3F 0.22 tolerated(0.06) benign(0.071) TCGA-33-A5GW-01 19 55147059 55147059 G A LILRB1 Missense_Mutation p.R551Q 0.40 tolerated(0.53) benign(0.002) TCGA-33-A5GW-01 19 56133995 56133995 C G ZNF784 Missense_Mutation p.D32H 0.09 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-33-A5GW-01 19 56515180 56515180 G C NLRP5 Missense_Mutation p.G54A 0.30 tolerated(0.34) benign(0.01) TCGA-33-A5GW-01 19 57869184 57869184 T G ZNF304 Silent p.G649G 0.37 TCGA-33-A5GW-01 19 7607668 7607668 G T PNPLA6 Nonsense_Mutation p.E471* 0.08 TCGA-33-A5GW-01 19 7607669 7607669 A T PNPLA6 Missense_Mutation p.E471V 0.09 deleterious(0.03) possibly_damaging(0.706) TCGA-33-A5GW-01 1 162535876 162535876 C G UAP1 Silent p.L6L 0.05 TCGA-33-A5GW-01 1 169582304 169582304 C T SELP Missense_Mutation p.C213Y 0.46 deleterious(0) probably_damaging(1) TCGA-33-A5GW-01 1 181721300 181721300 C G CACNA1E Missense_Mutation p.I1251M 0.04 deleterious(0) possibly_damaging(0.9) TCGA-33-A5GW-01 1 183947645 183947645 A T COLGALT2 Silent p.T91T 0.40 TCGA-33-A5GW-01 1 203017808 203017808 A G PPFIA4 5'Flank 0.30 TCGA-33-A5GW-01 1 205138431 205138431 C T DSTYK Missense_Mutation p.R395Q 0.04 tolerated(0.24) benign(0.391) TCGA-33-A5GW-01 1 212798913 212798913 G A FAM71A Missense_Mutation p.G232R 0.31 tolerated(0.23) benign(0.23) TCGA-33-A5GW-01 1 214811289 214811289 C G CENPF Silent p.L509L 0.19 TCGA-33-A5GW-01 1 242263993 242263993 A G PLD5 Missense_Mutation p.V444A 0.32 deleterious(0) probably_damaging(0.997) TCGA-33-A5GW-01 1 247920929 247920929 G T OR1C1 Missense_Mutation p.F260L 0.27 tolerated(0.49) benign(0.01) TCGA-33-A5GW-01 1 25757653 25757653 G A TMEM57 Missense_Mutation p.E22K 0.15 deleterious(0.01) benign(0.291) TCGA-33-A5GW-01 1 31782891 31782891 G C ZCCHC17 Intron 0.63 TCGA-33-A5GW-01 1 32196512 32196512 G C BAI2 Missense_Mutation p.F1423L 0.13 tolerated(0.58) benign(0.021) TCGA-33-A5GW-01 1 40434042 40434042 G A MFSD2A Silent p.L428L 0.77 TCGA-33-A5GW-01 1 40768311 40768311 C T COL9A2 Missense_Mutation p.G592S 0.86 deleterious(0) probably_damaging(1) TCGA-33-A5GW-01 1 70716076 70716076 G C SRSF11 Missense_Mutation p.D383H 0.28 deleterious(0.01) unknown(0) TCGA-33-A5GW-01 1 94528831 94528831 G C ABCA4 Missense_Mutation p.Q533E 0.62 tolerated(0.33) benign(0.049) TCGA-33-A5GW-01 20 3025077 3025077 G A GNRH2 Missense_Mutation p.R6Q 0.16 tolerated_low_confidence(0.36) benign(0.001) TCGA-33-A5GW-01 20 30419647 30419647 C T MYLK2 Silent p.V522V 0.16 TCGA-33-A5GW-01 20 34208893 34208893 C T SPAG4 Silent p.H421H 0.36 TCGA-33-A5GW-01 20 35060659 35060659 G T DLGAP4 Missense_Mutation p.R180L 0.39 deleterious(0) probably_damaging(0.999) TCGA-33-A5GW-01 20 46264268 46264268 A G NCOA3 Missense_Mutation p.I439V 0.44 tolerated(0.15) benign(0.002) TCGA-33-A5GW-01 20 51871459 51871459 C G TSHZ2 Missense_Mutation p.L488V 0.23 tolerated(0.4) benign(0.01) TCGA-33-A5GW-01 20 61143370 61143370 G A C20orf166 5'Flank 0.34 TCGA-33-A5GW-01 20 62121965 62121965 A T EEF1A2 Missense_Mutation p.L299Q 0.43 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-33-A5GW-01 21 30365163 30365163 C T LTN1 Silent p.R34R 0.32 TCGA-33-A5GW-01 21 37650372 37650372 C T DOPEY2 Missense_Mutation p.R1938C 0.34 deleterious(0) probably_damaging(0.985) TCGA-33-A5GW-01 21 38480713 38480713 G T TTC3 Missense_Mutation p.K289N 0.44 deleterious(0) probably_damaging(0.957) TCGA-33-A5GW-01 21 43231119 43231119 G A PRDM15 Silent p.L1188L 0.04 TCGA-33-A5GW-01 21 43836597 43836597 C A UBASH3A Silent p.A238A 0.14 TCGA-33-A5GW-01 21 43836598 43836598 C A UBASH3A Missense_Mutation p.H239N 0.14 deleterious(0.03) benign(0.066) TCGA-33-A5GW-01 21 47986473 47986473 G A DIP2A Missense_Mutation p.G1447E 0.28 tolerated(1) benign(0.007) TCGA-33-A5GW-01 22 18769676 18769676 A T GGT3P RNA 0.13 TCGA-33-A5GW-01 22 21975835 21975835 C - UBE2L3 Frame_Shift_Del p.Q174Sfs*10 0.26 TCGA-33-A5GW-01 22 24836564 24836564 G T ADORA2A Missense_Mutation p.V116L 0.38 deleterious(0) benign(0.437) TCGA-33-A5GW-01 22 29153083 29153083 A G HSCB Missense_Mutation p.K212E 0.39 deleterious(0.01) possibly_damaging(0.564) TCGA-33-A5GW-01 22 30374444 30374444 G A MTMR3 Missense_Mutation p.R6Q 0.47 tolerated(1) benign(0.001) TCGA-33-A5GW-01 22 38131290 38131290 G C TRIOBP Missense_Mutation p.Q1649H 0.06 deleterious_low_confidence(0) possibly_damaging(0.823) TCGA-33-A5GW-01 22 38155456 38155456 G A TRIOBP Intron 0.04 TCGA-33-A5GW-01 22 38610501 38610501 G C MAFF Silent p.L37L 0.32 TCGA-33-A5GW-01 2 109384684 109384684 A C RANBP2 Silent p.V2563V 0.39 TCGA-33-A5GW-01 2 131812903 131812903 A C FAM168B Silent p.P139P 0.03 TCGA-33-A5GW-01 2 131897832 131897832 C T PLEKHB2 Silent p.Y180Y 0.27 TCGA-33-A5GW-01 2 178098944 178098944 C G NFE2L2 Missense_Mutation p.R34P 0.34 deleterious(0) probably_damaging(1) TCGA-33-A5GW-01 2 179489408 179489408 C T TTN Missense_Mutation p.G14867R 0.40 TCGA-33-A5GW-01 2 185803531 185803531 A T ZNF804A Silent p.P1136P 0.38 TCGA-33-A5GW-01 2 196837074 196837074 C T DNAH7 Missense_Mutation p.M650I 0.13 tolerated(1) benign(0) TCGA-33-A5GW-01 2 208795834 208795834 G C PLEKHM3 Missense_Mutation p.Q568E 0.37 deleterious(0.02) benign(0.174) TCGA-33-A5GW-01 2 21242703 21242703 G T APOB Nonsense_Mutation p.S964* 0.32 TCGA-33-A5GW-01 2 215440608 215440608 T A VWC2L 3'UTR 0.39 TCGA-33-A5GW-01 2 230655855 230655855 C T TRIP12 Missense_Mutation p.D1435N 0.05 deleterious(0.02) possibly_damaging(0.679) TCGA-33-A5GW-01 2 29404792 29404792 A G CLIP4 3'UTR 0.46 TCGA-33-A5GW-01 2 43919680 43919680 G C PLEKHH2 Missense_Mutation p.A72P 0.34 tolerated(0.15) possibly_damaging(0.474) TCGA-33-A5GW-01 2 71780175 71780175 C A DYSF Missense_Mutation p.A614E 0.39 deleterious(0) probably_damaging(0.941) TCGA-33-A5GW-01 2 75280797 75280797 A G TACR1 Missense_Mutation p.W224R 0.52 deleterious(0) probably_damaging(0.999) TCGA-33-A5GW-01 2 99977851 99977851 G T EIF5B Missense_Mutation p.G163W 0.31 unknown(0) TCGA-33-A5GW-01 3 112300139 112300139 A G SLC35A5 Missense_Mutation p.D392G 0.04 tolerated(0.55) benign(0.005) TCGA-33-A5GW-01 3 127820473 127820473 C G RUVBL1 Missense_Mutation p.E178Q 0.04 tolerated(0.08) benign(0.371) TCGA-33-A5GW-01 3 140401604 140401604 C T TRIM42 Silent p.L214L 0.19 TCGA-33-A5GW-01 3 159995182 159995182 T A IFT80 Missense_Mutation p.N671Y 0.15 deleterious(0.01) benign(0.219) TCGA-33-A5GW-01 3 167512470 167512470 G A SERPINI1 Missense_Mutation p.E247K 0.28 tolerated(1) benign(0.221) TCGA-33-A5GW-01 3 176767793 176767793 C G TBL1XR1 Missense_Mutation p.D232H 0.16 deleterious(0.01) probably_damaging(0.94) TCGA-33-A5GW-01 3 180372672 180372672 C A CCDC39 Nonsense_Mutation p.E270* 0.32 TCGA-33-A5GW-01 3 183209688 183209688 G A KLHL6 3'UTR 0.20 TCGA-33-A5GW-01 3 184429128 184429128 C T MAGEF1 Missense_Mutation p.G161E 0.17 tolerated(0.75) possibly_damaging(0.766) TCGA-33-A5GW-01 3 184429144 184429145 - CTG MAGEF1 In_Frame_Ins p.E155_E156insQ 0.15 TCGA-33-A5GW-01 3 44636568 44636568 A G ZNF660 Missense_Mutation p.T295A 0.70 deleterious(0.03) benign(0.341) TCGA-33-A5GW-01 3 48603983 48603983 G C COL7A1 Missense_Mutation p.P2773R 0.63 probably_damaging(0.998) TCGA-33-A5GW-01 3 52156469 52156469 C G POC1A Missense_Mutation p.D303H 0.30 deleterious(0) probably_damaging(0.937) TCGA-33-A5GW-01 3 97852400 97852400 C G OR5H1 Missense_Mutation p.P287A 0.05 deleterious(0.01) probably_damaging(0.957) TCGA-33-A5GW-01 3 98216834 98216834 C A OR5K2 Missense_Mutation p.L104I 0.25 deleterious(0.02) possibly_damaging(0.703) TCGA-33-A5GW-01 4 114277730 114277730 A G ANK2 Silent p.L2652L 0.47 TCGA-33-A5GW-01 4 121957540 121957540 G A NDNF Missense_Mutation p.T529I 0.62 deleterious(0) benign(0.238) TCGA-33-A5GW-01 4 134071718 134071718 C T PCDH10 Silent p.F141F 0.06 TCGA-33-A5GW-01 4 153332673 153332673 G A FBXW7 Nonsense_Mutation p.Q95* 0.67 TCGA-33-A5GW-01 4 156283286 156283286 C A MAP9 Missense_Mutation p.C239F 0.53 tolerated(0.19) benign(0.111) TCGA-33-A5GW-01 4 174253251 174253251 C T HMGB2 Missense_Mutation p.E204K 0.78 tolerated_low_confidence(0.76) unknown(0) TCGA-33-A5GW-01 4 1988139 1988139 G T NELFA Intron 0.34 TCGA-33-A5GW-01 4 22389346 22389346 T A GPR125 Missense_Mutation p.K1316N 0.16 deleterious(0) probably_damaging(0.993) TCGA-33-A5GW-01 4 39114738 39114738 C T KLHL5 Missense_Mutation p.S642L 0.24 tolerated(0.06) possibly_damaging(0.622) TCGA-33-A5GW-01 4 70460194 70460194 C T UGT2A1 Splice_Site p.X601_splice 0.04 TCGA-33-A5GW-01 4 71347335 71347335 C T MUC7 Missense_Mutation p.P292S 0.30 tolerated(0.13) unknown(0) TCGA-33-A5GW-01 4 74320954 74320954 G T AFP Missense_Mutation p.G596V 0.18 tolerated(0.07) possibly_damaging(0.907) TCGA-33-A5GW-01 4 78652678 78652678 T C CNOT6L Missense_Mutation p.Q296R 0.39 tolerated(0.08) possibly_damaging(0.588) TCGA-33-A5GW-01 4 85731124 85731124 G C WDFY3 Nonsense_Mutation p.S754* 0.03 TCGA-33-A5GW-01 5 140563895 140563895 C G PCDHB16 Silent p.T587T 0.08 TCGA-33-A5GW-01 5 140782756 140782756 G T PCDHGA9 Silent p.P79P 0.35 TCGA-33-A5GW-01 5 171638757 171638757 C T UBTD2 3'UTR 0.44 TCGA-33-A5GW-01 5 33937420 33937420 G T RXFP3 Missense_Mutation p.R192L 0.19 tolerated(0.08) benign(0.049) TCGA-33-A5GW-01 5 33937421 33937421 G T RXFP3 Silent p.R192R 0.19 TCGA-33-A5GW-01 5 34830837 34830837 T A RAI14 Silent p.L973L 0.18 TCGA-33-A5GW-01 6 106727561 106727561 C A ATG5 Missense_Mutation p.K151N 0.18 tolerated(0.93) possibly_damaging(0.774) TCGA-33-A5GW-01 6 127797478 127797478 C G SOGA3 Missense_Mutation p.G565R 0.46 deleterious(0.03) probably_damaging(1) TCGA-33-A5GW-01 6 155776960 155776960 G T NOX3 5'UTR 0.41 TCGA-33-A5GW-01 6 155776961 155776961 G T NOX3 5'UTR 0.41 TCGA-33-A5GW-01 6 27783154 27783154 C G HIST1H2BM Silent p.A111A 0.28 TCGA-33-A5GW-01 6 27783160 27783160 C G HIST1H2BM Silent p.S113S 0.29 TCGA-33-A5GW-01 6 28219812 28219812 A G ZKSCAN4 5'UTR 0.44 TCGA-33-A5GW-01 6 31964746 31964746 C T C4A Silent p.L1273L 0.31 TCGA-33-A5GW-01 6 38794075 38794075 C A DNAH8 Missense_Mutation p.R1114S 0.30 benign(0.012) TCGA-33-A5GW-01 6 43023744 43023744 A - MRPL2 Frame_Shift_Del p.A175Lfs*46 0.32 TCGA-33-A5GW-01 6 66094342 66094342 A G EYS Silent p.C412C 0.49 TCGA-33-A5GW-01 6 83863916 83863916 A G DOPEY1 Missense_Mutation p.D2136G 0.06 deleterious(0) probably_damaging(0.999) TCGA-33-A5GW-01 7 107533661 107533661 G T DLD Missense_Mutation p.R19L 0.43 tolerated_low_confidence(0.63) benign(0.031) TCGA-33-A5GW-01 7 124404203 124404203 G C GPR37 Missense_Mutation p.I276M 0.41 deleterious(0.04) probably_damaging(0.959) TCGA-33-A5GW-01 7 124481213 124481213 C A POT1 Missense_Mutation p.G395C 0.68 deleterious(0.01) benign(0.401) TCGA-33-A5GW-01 7 141619530 141619530 C G OR9A4 Silent p.L285L 0.19 TCGA-33-A5GW-01 7 142448119 142448119 G C TRBV29-1 5'UTR 0.55 TCGA-33-A5GW-01 7 149482709 149482709 G T SSPO RNA 0.78 TCGA-33-A5GW-01 7 149575803 149575803 G A ATP6V0E2 Intron 0.71 TCGA-33-A5GW-01 7 158528224 158528224 G A ESYT2 Silent p.F852F 0.06 TCGA-33-A5GW-01 7 36338756 36338756 C T EEPD1 Missense_Mutation p.R551W 0.05 deleterious(0.02) possibly_damaging(0.513) TCGA-33-A5GW-01 7 44104504 44104504 C T PGAM2 Silent p.Q174Q 0.29 TCGA-33-A5GW-01 7 99661990 99661990 A T ZSCAN21 Missense_Mutation p.N391I 0.37 tolerated(0.16) probably_damaging(0.931) TCGA-33-A5GW-01 8 101608942 101608942 G A SNX31 Silent p.I301I 0.40 TCGA-33-A5GW-01 8 110588154 110588154 A G SYBU Silent p.L325L 0.37 TCGA-33-A5GW-01 8 139149499 139149499 C A FAM135B Silent p.L1302L 0.39 TCGA-33-A5GW-01 8 24326285 24326285 C A ADAM7 Silent p.I195I 0.72 TCGA-33-A5GW-01 8 27967948 27967948 T C ELP3 Missense_Mutation p.I152T 0.72 deleterious(0.04) benign(0.096) TCGA-33-A5GW-01 8 55538270 55538270 G A RP1 Missense_Mutation p.A610T 0.46 deleterious(0.05) benign(0.141) TCGA-33-A5GW-01 8 65509158 65509158 G C CYP7B1 3'UTR 0.40 TCGA-33-A5GW-01 8 69358736 69358736 A T C8orf34 Intron 0.35 TCGA-33-A5GW-01 8 89198748 89198748 C A MMP16 Missense_Mutation p.A121S 0.36 deleterious(0) possibly_damaging(0.757) TCGA-33-A5GW-01 9 1056129 1056129 C G DMRT2 Intron 0.21 TCGA-33-A5GW-01 9 123903658 123903658 G T CNTRL Splice_Site p.X828_splice 0.38 TCGA-33-A5GW-01 9 124751896 124751896 C G TTLL11 Missense_Mutation p.E373Q 0.42 tolerated(0.12) possibly_damaging(0.493) TCGA-33-A5GW-01 9 130569535 130569535 C T FPGS Silent p.L183L 0.20 TCGA-33-A5GW-01 9 130575853 130575853 G A FPGS Silent p.L578L 0.24 TCGA-33-A5GW-01 9 130580495 130580495 G A ENG Silent p.F530F 0.19 TCGA-33-A5GW-01 9 130581022 130581022 G A ENG Silent p.I467I 0.19 TCGA-33-A5GW-01 9 133780793 133780793 C G FIBCD1 Missense_Mutation p.K318N 0.08 tolerated(0.1) benign(0.005) TCGA-33-A5GW-01 9 133963119 133963119 G C LAMC3 Silent p.L1464L 0.15 TCGA-33-A5GW-01 9 139369856 139369856 C A SEC16A Missense_Mutation p.V738F 0.27 deleterious(0) probably_damaging(0.999) TCGA-33-A5GW-01 9 140139979 140139979 A T FAM166A Missense_Mutation p.L101Q 0.84 tolerated(0.08) possibly_damaging(0.646) TCGA-33-A5GW-01 9 16419490 16419490 C T BNC2 Missense_Mutation p.E933K 0.05 tolerated(0.92) benign(0.025) TCGA-33-A5GW-01 9 19119648 19119648 C G PLIN2 Silent p.L259L 0.35 TCGA-33-A5GW-01 9 21971209 21971209 T C CDKN2A Splice_Site p.X51_splice 0.80 TCGA-33-A5GW-01 9 6486875 6486875 A G UHRF2 Missense_Mutation p.N483D 0.85 tolerated(0.07) probably_damaging(0.966) TCGA-33-A5GW-01 9 91606788 91606788 G A C9orf47 Missense_Mutation p.G165E 0.39 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-33-A5GW-01 X 12994370 12994370 C T TMSB4X 5'UTR 0.18 TCGA-33-A5GW-01 X 12994992 12994992 C G TMSB4X 3'UTR 0.15 TCGA-33-A5GW-01 X 148037492 148037492 C A AFF2 Missense_Mutation p.S639R 0.79 deleterious(0) benign(0.227) TCGA-33-A5GW-01 X 148627427 148627427 C T CXorf40A Missense_Mutation p.A84V 0.66 tolerated(0.4) benign(0.023) TCGA-33-A5GW-01 X 149101842 149101842 G A CXorf40B Missense_Mutation p.A84V 0.33 tolerated(0.39) benign(0.007) TCGA-33-A5GW-01 X 154157638 154157662 CTTTGATCACCAGTCATCTCCAAGG - F8 Frame_Shift_Del p.T1468Kfs*91 0.85 TCGA-33-A5GW-01 X 35820427 35820427 C G MAGEB16 Silent p.L38L 0.25 TCGA-33-A5GW-01 X 47516984 47516984 C T UXT Missense_Mutation p.V91I 0.12 tolerated(0.05) benign(0.255) TCGA-33-A5GW-01 X 77130979 77130979 G A MAGT1 Missense_Mutation p.S105F 0.77 deleterious(0) probably_damaging(0.992) TCGA-33-A5GW-01 X 84362469 84362469 G C SATL1 Missense_Mutation p.S502R 0.40 deleterious(0.05) possibly_damaging(0.886) TCGA-33-AAS8-01 10 102584736 102584736 C T PAX2 Intron 0.34 TCGA-33-AAS8-01 10 126678053 126678053 G A CTBP2 3'UTR 0.41 TCGA-33-AAS8-01 10 129537266 129537266 G C FOXI2 3'UTR 0.38 TCGA-33-AAS8-01 10 43016390 43016390 C G ZNF37BP RNA 0.39 TCGA-33-AAS8-01 10 61012663 61012663 G C FAM13C Silent p.L476L 0.49 TCGA-33-AAS8-01 10 87489356 87489356 A T GRID1 Missense_Mutation p.S417T 0.56 tolerated(0.11) benign(0.065) TCGA-33-AAS8-01 10 95386454 95386454 G T PDE6C Missense_Mutation p.V333L 0.41 tolerated(0.06) benign(0.168) TCGA-33-AAS8-01 10 95557629 95557629 A T LGI1 3'UTR 0.43 TCGA-33-AAS8-01 11 107463056 107463056 C A AP000889.3 Missense_Mutation p.A85D 0.38 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-33-AAS8-01 11 108225544 108225544 T G ATM Missense_Mutation p.C2931W 0.23 deleterious(0) probably_damaging(1) TCGA-33-AAS8-01 11 120008124 120008124 C T TRIM29 Missense_Mutation p.A206T 0.08 tolerated(0.11) probably_damaging(0.999) TCGA-33-AAS8-01 11 124756969 124756969 G T ROBO4 Missense_Mutation p.S780Y 0.55 deleterious(0) possibly_damaging(0.608) TCGA-33-AAS8-01 11 18740254 18740254 G - IGSF22 Frame_Shift_Del p.L240Wfs*17 0.25 TCGA-33-AAS8-01 11 2186497 2186497 C G TH Silent p.V464V 0.26 TCGA-33-AAS8-01 11 30352564 30352565 - C ARL14EP Frame_Shift_Ins p.R24Pfs*6 0.20 TCGA-33-AAS8-01 11 32697429 32697429 T C CCDC73 Intron 0.19 TCGA-33-AAS8-01 11 44074261 44074261 C T ACCSL Silent p.S274S 0.28 TCGA-33-AAS8-01 11 5080365 5080365 T C OR52E2 Missense_Mutation p.I165V 0.40 tolerated(0.27) benign(0.098) TCGA-33-AAS8-01 11 5246880 5246880 T C HBB Missense_Mutation p.Y131C 0.36 deleterious(0.02) benign(0.044) TCGA-33-AAS8-01 11 55063038 55063038 G T TRIM51HP RNA 0.29 TCGA-33-AAS8-01 11 55065007 55065007 C G TRIM51HP RNA 0.20 TCGA-33-AAS8-01 11 56086262 56086262 C A OR8K3 Silent p.T160T 0.35 TCGA-33-AAS8-01 11 56510510 56510510 G T OR9G4 Missense_Mutation p.L260I 0.26 deleterious(0.01) benign(0.065) TCGA-33-AAS8-01 11 60296842 60296842 T A MS4A13 Missense_Mutation p.L104H 0.28 deleterious(0) probably_damaging(0.992) TCGA-33-AAS8-01 11 62290682 62290682 G - AHNAK Frame_Shift_Del p.P3736Qfs*5 0.24 TCGA-33-AAS8-01 11 62293138 62293138 G A AHNAK Silent p.N2917N 0.31 TCGA-33-AAS8-01 11 64032672 64032672 G C PLCB3 Missense_Mutation p.D939H 0.43 deleterious(0) benign(0.04) TCGA-33-AAS8-01 11 6459635 6459635 C A HPX Silent p.V147V 0.28 TCGA-33-AAS8-01 11 6630779 6630779 T C ILK Silent p.G255G 0.30 TCGA-33-AAS8-01 11 6643165 6643165 C A DCHS1 Missense_Mutation p.A3248S 0.32 tolerated(0.47) benign(0.047) TCGA-33-AAS8-01 11 67074371 67074373 AGA - SSH3 In_Frame_Del p.E135del 0.32 TCGA-33-AAS8-01 11 68191147 68191147 T C LRP5 Missense_Mutation p.V1073A 0.37 tolerated(0.9) benign(0.003) TCGA-33-AAS8-01 11 7335113 7335113 G T SYT9 Missense_Mutation p.D329Y 0.29 deleterious(0) possibly_damaging(0.759) TCGA-33-AAS8-01 11 7437287 7437287 G C SYT9 Silent p.L353L 0.33 TCGA-33-AAS8-01 11 88323875 88323875 G T GRM5 Silent p.V528V 0.29 TCGA-33-AAS8-01 11 89421776 89421776 T C FOLH1B RNA 0.30 TCGA-33-AAS8-01 12 104031861 104031861 G C STAB2 Silent p.R259R 0.31 TCGA-33-AAS8-01 12 118490249 118490249 C G WSB2 Silent p.G16G 0.20 TCGA-33-AAS8-01 12 122018731 122018731 A G KDM2B Missense_Mutation p.V29A 0.29 tolerated_low_confidence(0.28) benign(0.001) TCGA-33-AAS8-01 12 129822279 129822279 G T TMEM132D Missense_Mutation p.T400K 0.32 deleterious(0.01) probably_damaging(0.93) TCGA-33-AAS8-01 12 21391958 21391958 T A SLCO1B1 Silent p.L637L 0.31 TCGA-33-AAS8-01 12 32137981 32137981 G C KIAA1551 Missense_Mutation p.L1364F 0.27 tolerated(0.11) benign(0.026) TCGA-33-AAS8-01 12 46623014 46623014 T A SLC38A1 Missense_Mutation p.N79I 0.43 deleterious(0) probably_damaging(0.999) TCGA-33-AAS8-01 12 49434131 49434131 G A KMT2D Silent p.P2474P 0.26 TCGA-33-AAS8-01 12 52943108 52943108 G C KRT71 Missense_Mutation p.A229G 0.34 deleterious(0.02) possibly_damaging(0.676) TCGA-33-AAS8-01 12 53012009 53012009 C A KRT73 Silent p.P100P 0.38 TCGA-33-AAS8-01 12 55614918 55614918 T C OR10A7 Missense_Mutation p.V37A 0.33 deleterious(0.05) benign(0.004) TCGA-33-AAS8-01 12 55945688 55945688 C G OR6C4 Missense_Mutation p.I226M 0.37 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-33-AAS8-01 12 57861798 57861798 C A GLI1 Missense_Mutation p.P367T 0.24 deleterious(0) probably_damaging(0.996) TCGA-33-AAS8-01 12 68708997 68708997 T C MDM1 Silent p.P410P 0.34 TCGA-33-AAS8-01 12 75698567 75698567 C G CAPS2 Missense_Mutation p.R269P 0.16 deleterious(0) probably_damaging(0.977) TCGA-33-AAS8-01 13 101707736 101707736 C G NALCN Missense_Mutation p.A1710P 0.46 tolerated_low_confidence(0.15) benign(0.006) TCGA-33-AAS8-01 13 108882178 108882178 T A ABHD13 Silent p.S204S 0.54 TCGA-33-AAS8-01 13 60737861 60737861 C T DIAPH3 Missense_Mutation p.G14S 0.38 tolerated_low_confidence(0.27) benign(0.002) TCGA-33-AAS8-01 14 101522567 101522567 G T MIR323B RNA 0.40 TCGA-33-AAS8-01 14 106204098 106204098 C A IGHG1 3'UTR 0.54 TCGA-33-AAS8-01 14 19553440 19553440 G C POTEG Missense_Mutation p.M8I 0.16 tolerated_low_confidence(0.57) benign(0.002) TCGA-33-AAS8-01 14 23896902 23896902 G T MYH7 Missense_Mutation p.L594M 0.47 deleterious(0) probably_damaging(0.996) TCGA-33-AAS8-01 14 50472475 50472475 C T C14orf182 Missense_Mutation p.A15T 0.44 tolerated_low_confidence(0.06) possibly_damaging(0.908) TCGA-33-AAS8-01 14 59112626 59112626 G A DACT1 Missense_Mutation p.E429K 0.50 deleterious(0.03) probably_damaging(0.973) TCGA-33-AAS8-01 15 28525321 28525321 C G HERC2 Silent p.V145V 0.19 TCGA-33-AAS8-01 15 33954927 33954927 G T RYR3 Silent p.L1732L 0.22 TCGA-33-AAS8-01 15 48566823 48566823 G A SLC12A1 Missense_Mutation p.D820N 0.39 tolerated(0.18) possibly_damaging(0.684) TCGA-33-AAS8-01 15 74627438 74627438 C - CCDC33 Intron 0.24 TCGA-33-AAS8-01 15 79224731 79224731 C T CTSH Missense_Mutation p.G159R 0.20 deleterious(0) probably_damaging(0.955) TCGA-33-AAS8-01 16 1394488 1394488 T C BAIAP3 Missense_Mutation p.Y576H 0.24 deleterious(0) possibly_damaging(0.756) TCGA-33-AAS8-01 16 20482947 20482947 G T ACSM2A Missense_Mutation p.W277L 0.30 deleterious(0) probably_damaging(1) TCGA-33-AAS8-01 16 24104150 24104150 G A PRKCB Missense_Mutation p.G190S 0.17 deleterious(0.03) possibly_damaging(0.899) TCGA-33-AAS8-01 16 24104151 24104151 G T PRKCB Missense_Mutation p.G190V 0.17 deleterious(0) probably_damaging(0.988) TCGA-33-AAS8-01 16 31075330 31075330 C T ZNF668 Missense_Mutation p.A174T 0.33 tolerated(1) benign(0.002) TCGA-33-AAS8-01 16 31102434 31102434 A C VKORC1 3'UTR 0.35 TCGA-33-AAS8-01 16 33020541 33020541 G - IGHV3OR16-8 Frame_Shift_Del 0.31 TCGA-33-AAS8-01 16 50746044 50746044 G A NOD2 Nonsense_Mutation p.W741* 0.54 TCGA-33-AAS8-01 16 61687870 61687870 T C CDH8 Missense_Mutation p.D681G 0.30 deleterious(0) probably_damaging(0.996) TCGA-33-AAS8-01 16 71209523 71209523 G T HYDIN Missense_Mutation p.P168Q 0.21 probably_damaging(0.994) TCGA-33-AAS8-01 16 77327097 77327097 G A ADAMTS18 Missense_Mutation p.A1022V 0.34 tolerated(0.29) benign(0.005) TCGA-33-AAS8-01 16 88705461 88705461 C T IL17C Missense_Mutation p.H27Y 0.29 deleterious(0.04) benign(0.015) TCGA-33-AAS8-01 17 10404459 10404459 C G MYH1 Missense_Mutation p.A1236P 0.46 deleterious(0.05) possibly_damaging(0.704) TCGA-33-AAS8-01 17 33269606 33269606 T A CCT6B Missense_Mutation p.K261I 0.35 tolerated(0.1) benign(0.066) TCGA-33-AAS8-01 17 36099469 36099469 T G HNF1B Missense_Mutation p.Y169S 0.26 deleterious(0) probably_damaging(1) TCGA-33-AAS8-01 17 40997747 40997747 C T AOC2 Silent p.A368A 0.20 TCGA-33-AAS8-01 17 42850735 42850735 G A ADAM11 Missense_Mutation p.R311Q 0.29 tolerated(0.09) benign(0.015) TCGA-33-AAS8-01 17 51902290 51902290 T A KIF2B Missense_Mutation p.H632Q 0.35 deleterious(0.02) benign(0.035) TCGA-33-AAS8-01 17 62969603 62969603 T C AMZ2P1 RNA 0.32 TCGA-33-AAS8-01 17 72541057 72541057 C T CD300C Missense_Mutation p.V31M 0.34 tolerated(0.08) probably_damaging(0.986) TCGA-33-AAS8-01 17 72838727 72838727 C T GRIN2C Silent p.G1183G 0.29 TCGA-33-AAS8-01 17 7578280 7578280 G A TP53 Missense_Mutation p.P190L 0.31 deleterious(0.05) possibly_damaging(0.812) TCGA-33-AAS8-01 18 11889448 11889448 T C MPPE1 Silent p.R144R 0.39 TCGA-33-AAS8-01 18 61390705 61390705 A C SERPINB11 3'UTR 0.34 TCGA-33-AAS8-01 18 71803082 71803082 G A FBXO15 Silent p.L83L 0.27 TCGA-33-AAS8-01 18 74980785 74980785 C A GALR1 Nonsense_Mutation p.S326* 0.31 TCGA-33-AAS8-01 19 15063745 15063745 C A SLC1A6 Missense_Mutation p.W498C 0.25 deleterious(0) probably_damaging(0.988) TCGA-33-AAS8-01 19 15079174 15079174 C A SLC1A6 Silent p.L163L 0.20 TCGA-33-AAS8-01 19 15132169 15132169 C T CCDC105 Silent p.C293C 0.27 TCGA-33-AAS8-01 19 18092698 18092698 G T KCNN1 Missense_Mutation p.D227Y 0.29 deleterious(0) probably_damaging(0.984) TCGA-33-AAS8-01 19 18994969 18994969 G A CERS1 Missense_Mutation p.R173C 0.21 deleterious(0) probably_damaging(0.998) TCGA-33-AAS8-01 19 44590878 44590878 C T ZNF284 Missense_Mutation p.S416L 0.32 tolerated(0.2) benign(0.23) TCGA-33-AAS8-01 19 49552140 49552140 G A CGB8 5'UTR 0.62 TCGA-33-AAS8-01 19 50154698 50154698 G T SCAF1 Missense_Mutation p.R351L 0.45 unknown(0) TCGA-33-AAS8-01 19 50209562 50209562 C T CPT1C Missense_Mutation p.A412V 0.50 deleterious(0.04) benign(0.094) TCGA-33-AAS8-01 19 53014401 53014401 A G ZNF578 Missense_Mutation p.E256G 0.33 tolerated(0.08) benign(0.186) TCGA-33-AAS8-01 19 54969561 54969561 G T LENG8 Missense_Mutation p.A701S 0.18 tolerated(0.16) benign(0.102) TCGA-33-AAS8-01 19 6418060 6418060 G A KHSRP Missense_Mutation p.R304W 0.18 deleterious(0) probably_damaging(0.945) TCGA-33-AAS8-01 19 7687416 7687416 C T XAB2 Silent p.Q501Q 0.31 TCGA-33-AAS8-01 19 8973574 8973574 G C MUC16 Missense_Mutation p.R14248G 0.38 probably_damaging(0.976) TCGA-33-AAS8-01 19 9204257 9204257 G A OR1M1 Missense_Mutation p.V113I 0.29 tolerated(0.07) benign(0.003) TCGA-33-AAS8-01 1 158324235 158324235 T A CD1E Missense_Mutation p.S43T 0.34 tolerated(0.08) benign(0.354) TCGA-33-AAS8-01 1 159504913 159504913 C G OR10J5 Missense_Mutation p.E295D 0.22 tolerated(0.23) benign(0.076) TCGA-33-AAS8-01 1 160160582 160160582 G T CASQ1 Missense_Mutation p.G14V 0.25 tolerated_low_confidence(0.5) benign(0.046) TCGA-33-AAS8-01 1 161479757 161479757 C A FCGR2A Missense_Mutation p.T171N 0.26 tolerated(1) benign(0.001) TCGA-33-AAS8-01 1 169578832 169578832 G T SELP Missense_Mutation p.R415S 0.18 tolerated(1) benign(0.013) TCGA-33-AAS8-01 1 175046649 175046649 G A TNN Missense_Mutation p.G32D 0.25 tolerated(0.36) benign(0.093) TCGA-33-AAS8-01 1 17961404 17961404 A G ARHGEF10L Missense_Mutation p.Q607R 0.27 tolerated(0.06) possibly_damaging(0.767) TCGA-33-AAS8-01 1 186086169 186086169 G C HMCN1 Missense_Mutation p.D3869H 0.29 probably_damaging(0.999) TCGA-33-AAS8-01 1 190067165 190067165 T A BRINP3 Missense_Mutation p.T762S 0.31 tolerated(0.56) benign(0.018) TCGA-33-AAS8-01 1 190068002 190068002 C G BRINP3 Missense_Mutation p.D483H 0.30 deleterious(0) possibly_damaging(0.775) TCGA-33-AAS8-01 1 196367694 196367694 A G KCNT2 Silent p.A431A 0.18 TCGA-33-AAS8-01 1 206224515 206224515 C A AVPR1B Silent p.P25P 0.27 TCGA-33-AAS8-01 1 210971089 210971089 C T KCNH1 Missense_Mutation p.C559Y 0.29 deleterious(0) possibly_damaging(0.85) TCGA-33-AAS8-01 1 212799644 212799644 G T FAM71A Missense_Mutation p.E475D 0.42 tolerated(0.23) benign(0.002) TCGA-33-AAS8-01 1 214815258 214815258 C G CENPF Missense_Mutation p.Q1193E 0.35 benign(0.153) TCGA-33-AAS8-01 1 216420380 216420380 C A USH2A Missense_Mutation p.G786W 0.29 probably_damaging(0.999) TCGA-33-AAS8-01 1 221054545 221054545 C T HLX Missense_Mutation p.S201F 0.36 deleterious(0) probably_damaging(0.963) TCGA-33-AAS8-01 1 237802419 237802419 G A RYR2 Missense_Mutation p.A2345T 0.40 possibly_damaging(0.893) TCGA-33-AAS8-01 1 237948181 237948181 A G RYR2 Missense_Mutation p.Q4390R 0.31 benign(0.039) TCGA-33-AAS8-01 1 248058994 248058994 C A OR2W3 Missense_Mutation p.L36I 0.30 tolerated(0.45) benign(0.011) TCGA-33-AAS8-01 1 248790092 248790092 C G OR2T11 Missense_Mutation p.G113A 0.32 tolerated(1) benign(0.316) TCGA-33-AAS8-01 1 29638262 29638262 C G PTPRU Silent p.A1031A 0.40 TCGA-33-AAS8-01 1 38082223 38082223 G C RSPO1 Silent p.G73G 0.49 TCGA-33-AAS8-01 1 41215344 41215344 C T NFYC Missense_Mutation p.R93C 0.40 deleterious(0) benign(0.122) TCGA-33-AAS8-01 1 90470690 90470690 A T ZNF326 Splice_Site p.X33_splice 0.54 TCGA-33-AAS8-01 20 2845862 2845862 C T VPS16 Silent p.F691F 0.28 TCGA-33-AAS8-01 20 31626741 31626741 C T BPIFB6 Silent p.T291T 0.33 TCGA-33-AAS8-01 20 35526852 35526852 A C SAMHD1 Silent p.T533T 0.25 TCGA-33-AAS8-01 20 36024622 36024622 A T SRC Missense_Mutation p.H204L 0.40 deleterious(0) probably_damaging(0.999) TCGA-33-AAS8-01 20 44637636 44637636 G A MMP9 Missense_Mutation p.R24H 0.35 tolerated(0.45) benign(0.002) TCGA-33-AAS8-01 20 44642348 44642348 C T MMP9 Missense_Mutation p.L555F 0.27 tolerated(0.63) benign(0.001) TCGA-33-AAS8-01 20 47991292 47991292 C T KCNB1 Missense_Mutation p.A269T 0.25 deleterious(0) probably_damaging(1) TCGA-33-AAS8-01 20 57428557 57428557 G T GNAS Missense_Mutation p.Q79H 0.56 deleterious_low_confidence(0) unknown(0) TCGA-33-AAS8-01 20 57896143 57896143 C A EDN3 Missense_Mutation p.P146Q 0.33 tolerated(0.09) benign(0.155) TCGA-33-AAS8-01 20 62607157 62607157 C G SAMD10 Missense_Mutation p.E158D 0.42 tolerated(0.16) benign(0.026) TCGA-33-AAS8-01 20 9459610 9459610 G T PLCB4 Missense_Mutation p.G1180V 0.55 deleterious_low_confidence(0) possibly_damaging(0.787) TCGA-33-AAS8-01 21 10910383 10910383 G A TPTE Missense_Mutation p.T458I 0.15 deleterious(0) benign(0.158) TCGA-33-AAS8-01 21 22804495 22804495 C T NCAM2 Silent p.F516F 0.46 TCGA-33-AAS8-01 21 34166169 34166169 G A C21orf62 Silent p.N188N 0.52 TCGA-33-AAS8-01 22 19384374 19384374 C G HIRA Missense_Mutation p.S197T 0.30 tolerated(0.4) possibly_damaging(0.518) TCGA-33-AAS8-01 22 32555035 32555035 C G C22orf42 Missense_Mutation p.K56N 0.25 tolerated_low_confidence(0.45) benign(0.261) TCGA-33-AAS8-01 22 36113943 36113943 T A APOL5 Missense_Mutation p.L9M 0.22 tolerated_low_confidence(0.06) possibly_damaging(0.665) TCGA-33-AAS8-01 22 39427726 39427726 G T APOBEC3D Nonsense_Mutation p.E264* 0.23 TCGA-33-AAS8-01 2 113950126 113950126 G T PSD4 Missense_Mutation p.G600C 0.37 deleterious(0) probably_damaging(1) TCGA-33-AAS8-01 2 133540486 133540486 G C NCKAP5 Missense_Mutation p.Q1300E 0.27 deleterious(0) possibly_damaging(0.803) TCGA-33-AAS8-01 2 136575024 136575024 C A LCT Missense_Mutation p.D532Y 0.35 deleterious(0) probably_damaging(0.995) TCGA-33-AAS8-01 2 136873005 136873005 G T CXCR4 Missense_Mutation p.L169I 0.28 tolerated(0.47) benign(0.011) TCGA-33-AAS8-01 2 141819731 141819731 C A LRP1B Silent p.L375L 0.24 TCGA-33-AAS8-01 2 154996889 154996889 G T GALNT13 Missense_Mutation p.G61V 0.31 deleterious(0) possibly_damaging(0.905) TCGA-33-AAS8-01 2 163279990 163279990 G C KCNH7 Nonsense_Mutation p.Y670* 0.39 TCGA-33-AAS8-01 2 166606293 166606293 T C GALNT3 Missense_Mutation p.K580E 0.27 tolerated(0.96) benign(0.077) TCGA-33-AAS8-01 2 168106211 168106211 A G XIRP2 Missense_Mutation p.H2770R 0.19 benign(0.076) TCGA-33-AAS8-01 2 178098960 178098960 C T NFE2L2 Missense_Mutation p.D29N 0.47 deleterious(0) probably_damaging(1) TCGA-33-AAS8-01 2 179408212 179408212 A T TTN Missense_Mutation p.L32163H 0.34 TCGA-33-AAS8-01 2 179428370 179428370 C G TTN Missense_Mutation p.G27497R 0.31 TCGA-33-AAS8-01 2 179438524 179438524 T A TTN Missense_Mutation p.K24112I 0.20 TCGA-33-AAS8-01 2 179473094 179473094 G T TTN Missense_Mutation p.L17506I 0.28 TCGA-33-AAS8-01 2 179587777 179587777 T A TTN Silent p.T7319T 0.26 TCGA-33-AAS8-01 2 179593630 179593630 G A TTN Missense_Mutation p.L6379F 0.14 TCGA-33-AAS8-01 2 179595775 179595775 C A TTN Missense_Mutation p.V5873F 0.32 TCGA-33-AAS8-01 2 179610310 179610310 T A TTN Intron 0.20 TCGA-33-AAS8-01 2 179634821 179634821 C A TTN Silent p.G2869G 0.31 TCGA-33-AAS8-01 2 179730524 179730524 C T CCDC141 Silent p.E898E 0.32 TCGA-33-AAS8-01 2 185801926 185801926 G T ZNF804A Missense_Mutation p.K601N 0.25 deleterious(0.01) probably_damaging(0.981) TCGA-33-AAS8-01 2 224463941 224463941 G T SCG2 Missense_Mutation p.F20L 0.41 tolerated(0.58) benign(0.002) TCGA-33-AAS8-01 2 86255154 86255154 C T POLR1A Missense_Mutation p.R1639H 0.25 deleterious(0) probably_damaging(1) TCGA-33-AAS8-01 2 95770476 95770476 C A MRPS5 Splice_Site p.X225_splice 0.26 TCGA-33-AAS8-01 2 95770477 95770477 T A MRPS5 Splice_Site p.X225_splice 0.26 TCGA-33-AAS8-01 3 109049644 109049644 C A DPPA4 Missense_Mutation p.A136S 0.33 tolerated(0.14) possibly_damaging(0.808) TCGA-33-AAS8-01 3 124356069 124356069 A T KALRN Silent p.L163L 0.34 TCGA-33-AAS8-01 3 129389921 129389921 G A TMCC1 Missense_Mutation p.R255W 0.29 deleterious(0) probably_damaging(0.999) TCGA-33-AAS8-01 3 173996928 173996928 C G NLGN1 Silent p.L379L 0.72 TCGA-33-AAS8-01 3 173998932 173998932 G A NLGN1 Missense_Mutation p.D771N 0.11 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-33-AAS8-01 3 18393547 18393547 G A SATB1 Silent p.N572N 0.10 TCGA-33-AAS8-01 3 195594292 195594292 T C TNK2 Silent p.P1022P 0.16 TCGA-33-AAS8-01 3 197680935 197680935 C G RPL35A Missense_Mutation p.R76G 0.14 deleterious(0.01) possibly_damaging(0.791) TCGA-33-AAS8-01 3 38647615 38647615 A T SCN5A Missense_Mutation p.Y389N 0.35 deleterious(0) probably_damaging(0.999) TCGA-33-AAS8-01 3 49755594 49755594 T G AMIGO3 Silent p.V435V 0.51 TCGA-33-AAS8-01 4 100129913 100129913 A T ADH6 Nonsense_Mutation p.L247* 0.35 TCGA-33-AAS8-01 4 110788805 110788805 G T LRIT3 Missense_Mutation p.D200Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-33-AAS8-01 4 113539765 113539765 G C C4orf21 Missense_Mutation p.S478C 0.26 tolerated(0.19) benign(0) TCGA-33-AAS8-01 4 134084326 134084326 C G PCDH10 Missense_Mutation p.R998G 0.13 tolerated(0.09) benign(0.441) TCGA-33-AAS8-01 4 141484540 141484540 C G UCP1 Missense_Mutation p.R153P 0.16 deleterious(0) probably_damaging(0.989) TCGA-33-AAS8-01 4 152212547 152212547 T A PRSS48 Missense_Mutation p.V310D 0.34 deleterious_low_confidence(0.02) benign(0.05) TCGA-33-AAS8-01 4 156751120 156751120 G C ASIC5 Missense_Mutation p.T469S 0.24 deleterious(0.02) possibly_damaging(0.447) TCGA-33-AAS8-01 4 22456540 22456540 A T GPR125 Missense_Mutation p.I141K 0.25 deleterious(0) probably_damaging(0.999) TCGA-33-AAS8-01 4 46252330 46252330 G C GABRA2 Missense_Mutation p.P451A 0.11 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-33-AAS8-01 4 53291 53291 A T ZNF595 5'UTR 0.13 TCGA-33-AAS8-01 4 70920144 70920144 C A HTN1 Missense_Mutation p.H27N 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.607) TCGA-33-AAS8-01 4 88732921 88732921 C T IBSP Silent p.Y271Y 0.23 TCGA-33-AAS8-01 5 102285606 102285606 G A PAM Missense_Mutation p.G242D 0.38 deleterious(0) probably_damaging(0.999) TCGA-33-AAS8-01 5 118280282 118280282 T A DTWD2 Missense_Mutation p.H94L 0.47 tolerated(0.74) benign(0.05) TCGA-33-AAS8-01 5 129243860 129243860 G A CHSY3 Missense_Mutation p.G298E 0.47 deleterious(0) probably_damaging(1) TCGA-33-AAS8-01 5 140811184 140811184 C G PCDHGA12 Missense_Mutation p.D286E 0.07 tolerated_low_confidence(0.97) benign(0.012) TCGA-33-AAS8-01 5 143853398 143853398 G T KCTD16 Missense_Mutation p.Q336H 0.37 tolerated(0.07) benign(0.003) TCGA-33-AAS8-01 5 177695748 177695748 C A COL23A1 Missense_Mutation p.G160C 0.52 deleterious(0) unknown(0) TCGA-33-AAS8-01 5 31421486 31421486 T C DROSHA Splice_Site p.X1140_splice 0.29 TCGA-33-AAS8-01 5 41010071 41010071 C T MROH2B Missense_Mutation p.M1082I 0.27 tolerated(0.19) benign(0.039) TCGA-33-AAS8-01 5 73190314 73190314 T G ARHGEF28 Missense_Mutation p.V1252G 0.38 deleterious(0.02) benign(0.341) TCGA-33-AAS8-01 5 7866079 7866079 C T FASTKD3 Missense_Mutation p.D486N 0.24 tolerated(0.12) benign(0.117) TCGA-33-AAS8-01 5 79033146 79033146 C T CMYA5 Missense_Mutation p.T2853I 0.50 benign(0.204) TCGA-33-AAS8-01 6 10709615 10709615 C G PAK1IP1 Missense_Mutation p.T370S 0.29 tolerated_low_confidence(0.54) benign(0.005) TCGA-33-AAS8-01 6 123318845 123318845 T A CLVS2 5'UTR 0.29 TCGA-33-AAS8-01 6 123318955 123318955 G C CLVS2 Missense_Mutation p.E11D 0.29 tolerated(0.08) benign(0.019) TCGA-33-AAS8-01 6 132636912 132636912 C T MOXD1 Missense_Mutation p.G457E 0.28 deleterious(0) probably_damaging(1) TCGA-33-AAS8-01 6 132636915 132636915 C T MOXD1 Missense_Mutation p.G456E 0.25 deleterious(0) probably_damaging(0.999) TCGA-33-AAS8-01 6 152631147 152631147 C T SYNE1 Silent p.L5675L 0.16 TCGA-33-AAS8-01 6 152722349 152722349 G A SYNE1 Missense_Mutation p.T2318I 0.29 benign(0.002) TCGA-33-AAS8-01 6 160237603 160237603 G A PNLDC1 Silent p.A352A 0.29 TCGA-33-AAS8-01 6 166571881 166571881 G T T Silent p.I410I 0.26 TCGA-33-AAS8-01 6 170592432 170592432 C A DLL1 Missense_Mutation p.Q645H 0.27 tolerated(0.46) benign(0.001) TCGA-33-AAS8-01 6 29012445 29012445 C A OR2W1 Nonsense_Mutation p.G170* 0.46 TCGA-33-AAS8-01 6 31795771 31795771 A C HSPA1B Missense_Mutation p.Y15S 0.38 deleterious_low_confidence(0) probably_damaging(1) TCGA-33-AAS8-01 6 31838757 31838757 G - SLC44A4 Frame_Shift_Del p.L257Wfs*5 0.36 TCGA-33-AAS8-01 6 33287978 33287978 C T DAXX Silent p.Q425Q 0.30 TCGA-33-AAS8-01 6 43023858 43023858 C G MRPL2 Missense_Mutation p.D161H 0.24 deleterious(0) probably_damaging(0.986) TCGA-33-AAS8-01 6 44329668 44329668 C A SPATS1 Silent p.L171L 0.32 TCGA-33-AAS8-01 6 50805807 50805807 G A TFAP2B Splice_Site p.X314_splice 0.26 TCGA-33-AAS8-01 6 70990578 70990578 C A COL9A1 Splice_Site p.X305_splice 0.31 TCGA-33-AAS8-01 6 73904305 73904305 A T KCNQ5 Missense_Mutation p.D675V 0.24 deleterious(0.03) probably_damaging(0.991) TCGA-33-AAS8-01 7 100685087 100685087 C A MUC17 Missense_Mutation p.P3464T 0.31 benign(0) TCGA-33-AAS8-01 7 103131260 103131260 G T RELN Missense_Mutation p.L3154I 0.13 deleterious(0.02) benign(0.335) TCGA-33-AAS8-01 7 111409673 111409673 C T DOCK4 Missense_Mutation p.R1238K 0.33 tolerated(0.25) benign(0.011) TCGA-33-AAS8-01 7 128478812 128478812 G A FLNC Missense_Mutation p.G456S 0.24 deleterious(0.01) possibly_damaging(0.85) TCGA-33-AAS8-01 7 151818702 151818702 C T GALNT11 Silent p.G589G 0.27 TCGA-33-AAS8-01 7 24789262 24789262 C A DFNA5 Missense_Mutation p.W44C 0.27 deleterious(0) probably_damaging(1) TCGA-33-AAS8-01 7 83029502 83029502 C A SEMA3E Missense_Mutation p.R403L 0.28 tolerated(0.07) probably_damaging(0.965) TCGA-33-AAS8-01 7 87436748 87436748 C A RUNDC3B Missense_Mutation p.N356K 0.29 deleterious(0.02) benign(0.016) TCGA-33-AAS8-01 7 87912182 87912182 G T STEAP4 Missense_Mutation p.T253K 0.22 deleterious(0) benign(0.281) TCGA-33-AAS8-01 7 99170997 99170997 C A ZNF655 Nonsense_Mutation p.C457* 0.21 TCGA-33-AAS8-01 8 22009368 22009368 G T LGI3 Silent p.R214R 0.37 TCGA-33-AAS8-01 8 30701824 30701824 T A TEX15 Silent p.L1570L 0.37 TCGA-33-AAS8-01 8 6605290 6605290 C - AGPAT5 Frame_Shift_Del p.T229Rfs*19 0.34 TCGA-33-AAS8-01 8 87060794 87060794 C A PSKH2 Missense_Mutation p.G352V 0.36 deleterious(0.05) benign(0.178) TCGA-33-AAS8-01 9 113139573 113139573 C G SVEP1 Missense_Mutation p.W3494C 0.30 probably_damaging(0.999) TCGA-33-AAS8-01 9 116049092 116049092 C G PRPF4 Missense_Mutation p.L307V 0.30 deleterious(0) probably_damaging(1) TCGA-33-AAS8-01 9 123768203 123768203 C A C5 Silent p.G852G 0.21 TCGA-33-AAS8-01 9 125289473 125289473 G C OR1N1 Missense_Mutation p.L34V 0.21 tolerated(0.11) probably_damaging(0.991) TCGA-33-AAS8-01 9 134404928 134404928 G A UCK1 Silent p.I109I 0.10 TCGA-33-AAS8-01 9 140166622 140166622 G C NELFB Missense_Mutation p.E479Q 0.30 deleterious(0.03) possibly_damaging(0.649) TCGA-33-AAS8-01 9 21837937 21837937 T C MTAP Silent p.D126D 0.43 TCGA-33-AAS8-01 9 22451907 22451907 G T DMRTA1 Silent p.P504P 0.38 TCGA-33-AAS8-01 9 36162510 36162510 G A GLIPR2 Silent p.P152P 0.15 TCGA-33-AAS8-01 9 43627891 43627891 C A SPATA31A6 Missense_Mutation p.A266S 0.10 tolerated(0.06) possibly_damaging(0.891) TCGA-33-AAS8-01 9 75435924 75435924 C T TMC1 Missense_Mutation p.L644F 0.34 deleterious(0) probably_damaging(0.999) TCGA-33-AAS8-01 9 79322517 79322517 G T PRUNE2 Missense_Mutation p.S1558Y 0.31 tolerated(0.78) benign(0.309) TCGA-33-AAS8-01 9 88590049 88590049 G T NAA35 Missense_Mutation p.D202Y 0.25 deleterious(0) probably_damaging(0.928) TCGA-33-AAS8-01 X 100515566 100515566 G T DRP2 Missense_Mutation p.V944L 0.26 tolerated(0.12) benign(0.016) TCGA-33-AAS8-01 X 100630232 100630232 G T BTK Missense_Mutation p.S14Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-33-AAS8-01 X 10176579 10176579 C T CLCN4 Silent p.A446A 0.30 TCGA-33-AAS8-01 X 106109067 106109067 A T TBC1D8B Silent p.V822V 0.34 TCGA-33-AAS8-01 X 107827713 107827713 G T COL4A5 Splice_Site p.X331_splice 0.25 TCGA-33-AAS8-01 X 107978497 107978497 G A IRS4 Missense_Mutation p.H360Y 0.28 deleterious(0.01) possibly_damaging(0.908) TCGA-33-AAS8-01 X 111155828 111155828 C A TRPC5 Silent p.L197L 0.38 TCGA-33-AAS8-01 X 114082705 114082705 C A HTR2C Missense_Mutation p.S163R 0.25 tolerated(0.07) benign(0.163) TCGA-33-AAS8-01 X 119243215 119243215 C T RHOXF1 Missense_Mutation p.E164K 0.24 tolerated(0.73) benign(0.092) TCGA-33-AAS8-01 X 125685973 125685973 C T DCAF12L1 Missense_Mutation p.V207I 0.27 tolerated(0.08) possibly_damaging(0.812) TCGA-33-AAS8-01 X 127185799 127185799 G T ACTRT1 Silent p.T129T 0.28 TCGA-33-AAS8-01 X 127185800 127185800 G T ACTRT1 Missense_Mutation p.T129N 0.28 tolerated(0.22) benign(0) TCGA-33-AAS8-01 X 129318611 129318611 C A RAB33A Missense_Mutation p.A204D 0.24 tolerated(0.12) probably_damaging(0.913) TCGA-33-AAS8-01 X 130218327 130218327 G A ARHGAP36 Missense_Mutation p.A232T 0.40 tolerated(0.38) possibly_damaging(0.493) TCGA-33-AAS8-01 X 135314255 135314255 T A MAP7D3 Silent p.V287V 0.28 TCGA-33-AAS8-01 X 135429739 135429739 C - GPR112 Frame_Shift_Del p.P1292Hfs*5 0.28 TCGA-33-AAS8-01 X 138619226 138619226 C A F9 Nonsense_Mutation p.S49* 0.33 TCGA-33-AAS8-01 X 142717507 142717507 G T SLITRK4 Missense_Mutation p.P473Q 0.27 deleterious(0.05) probably_damaging(0.93) TCGA-33-AAS8-01 X 144904825 144904825 C A SLITRK2 Missense_Mutation p.N294K 0.22 tolerated(1) benign(0.01) TCGA-33-AAS8-01 X 144904826 144904826 C T SLITRK2 Missense_Mutation p.P295S 0.23 tolerated(0.19) benign(0.241) TCGA-33-AAS8-01 X 144906432 144906432 C A SLITRK2 Missense_Mutation p.P830Q 0.22 deleterious(0) probably_damaging(1) TCGA-33-AAS8-01 X 146366174 146366174 C A MIR514A3 RNA 0.23 TCGA-33-AAS8-01 X 151900656 151900656 T A MAGEA12 Missense_Mutation p.T49S 0.25 tolerated(0.18) benign(0.304) TCGA-33-AAS8-01 X 15262663 15262663 G A ASB9 Missense_Mutation p.P284S 0.25 deleterious(0) probably_damaging(1) TCGA-33-AAS8-01 X 153046735 153046735 C T SRPK3 Nonsense_Mutation p.Q42* 0.42 TCGA-33-AAS8-01 X 15350109 15350109 T C PIGA 5'UTR 0.33 TCGA-33-AAS8-01 X 21675085 21675085 G C KLHL34 Missense_Mutation p.S274R 0.28 deleterious(0.03) benign(0.065) TCGA-33-AAS8-01 X 2867652 2867652 G A ARSE Missense_Mutation p.R183C 0.34 deleterious(0.01) possibly_damaging(0.809) TCGA-33-AAS8-01 X 41007801 41007801 A G USP9X Missense_Mutation p.I533M 0.29 deleterious(0) probably_damaging(0.964) TCGA-33-AAS8-01 X 41075559 41075559 C G USP9X Missense_Mutation p.D1913E 0.28 tolerated(0.18) benign(0.047) TCGA-33-AAS8-01 X 49851244 49851244 A G CLCN5 Missense_Mutation p.Y425C 0.35 deleterious(0) probably_damaging(0.922) TCGA-33-AAS8-01 X 5811490 5811490 C T NLGN4X Missense_Mutation p.V607I 0.25 tolerated(0.34) possibly_damaging(0.891) TCGA-33-AAS8-01 X 69255219 69255219 C A EDA Silent p.I312I 0.38 TCGA-33-AAS8-01 X 70316396 70316396 G C FOXO4 Missense_Mutation p.E6D 0.36 tolerated_low_confidence(0.06) benign(0.046) TCGA-33-AAS8-01 X 70469148 70469148 T A ZMYM3 Intron 0.20 TCGA-33-AAS8-01 X 70472846 70472846 T G ZMYM3 Missense_Mutation p.Y87S 0.21 tolerated_low_confidence(0.26) probably_damaging(0.979) TCGA-33-AAS8-01 X 72092367 72092367 G C DMRTC1 Silent p.P166P 0.26 TCGA-33-AAS8-01 X 73068252 73068252 C A XIST RNA 0.26 TCGA-33-AAS8-01 X 73811750 73811750 G T RLIM Missense_Mutation p.S467Y 0.15 tolerated(0.41) unknown(0) TCGA-33-AAS8-01 X 73961213 73961213 G T KIAA2022 Missense_Mutation p.P1060H 0.50 deleterious(0) probably_damaging(1) TCGA-33-AAS8-01 X 74644589 74644589 G T ZDHHC15 Missense_Mutation p.H212N 0.50 deleterious(0.01) possibly_damaging(0.733) TCGA-33-AAS8-01 X 75648217 75648217 G C MAGEE1 5'UTR 0.27 TCGA-33-AAS8-01 X 77912590 77912590 C - ZCCHC5 Frame_Shift_Del p.R443Pfs*62 0.29 TCGA-33-AAS8-01 X 85950104 85950104 G A DACH2 Missense_Mutation p.A285T 0.05 tolerated(0.13) benign(0.002) TCGA-33-AAS8-01 X 86890724 86890724 A T KLHL4 Missense_Mutation p.H625L 0.88 deleterious(0.01) possibly_damaging(0.599) TCGA-33-AASB-01 10 108412260 108412260 G T SORCS1 Nonsense_Mutation p.Y785* 0.43 TCGA-33-AASB-01 10 118320022 118320022 G T PNLIP Missense_Mutation p.Q385H 0.36 deleterious(0) probably_damaging(0.935) TCGA-33-AASB-01 10 120934052 120934052 A T PRDX3 Silent p.G74G 0.58 TCGA-33-AASB-01 10 121689174 121689174 G T SEC23IP Missense_Mutation p.G790V 0.38 deleterious(0) probably_damaging(0.998) TCGA-33-AASB-01 10 134648935 134648935 G T TTC40 Missense_Mutation p.S2206Y 0.52 tolerated(0.77) benign(0.023) TCGA-33-AASB-01 10 135038196 135038196 G T KNDC1 Silent p.A1684A 0.33 TCGA-33-AASB-01 10 15838171 15838171 C T FAM188A Missense_Mutation p.D295N 0.28 deleterious(0.01) benign(0.016) TCGA-33-AASB-01 10 18242422 18242422 G T SLC39A12 Missense_Mutation p.G73W 0.33 deleterious(0.01) probably_damaging(0.957) TCGA-33-AASB-01 10 28345435 28345435 C A MPP7 Missense_Mutation p.D509Y 0.29 deleterious(0) possibly_damaging(0.781) TCGA-33-AASB-01 10 46122466 46122466 A C ZFAND4 Missense_Mutation p.L269V 0.23 deleterious(0.01) probably_damaging(0.96) TCGA-33-AASB-01 10 50121422 50121422 C A LRRC18 Intron 0.18 TCGA-33-AASB-01 10 55581697 55581697 G A PCDH15 Missense_Mutation p.S1932F 0.55 deleterious_low_confidence(0) unknown(0) TCGA-33-AASB-01 10 61830517 61830517 G T ANK3 Silent p.G3374G 0.41 TCGA-33-AASB-01 10 68381452 68381452 G T CTNNA3 Missense_Mutation p.Q458K 0.24 deleterious(0.02) benign(0.002) TCGA-33-AASB-01 10 71244942 71244942 G T TSPAN15 Missense_Mutation p.G110C 0.51 tolerated(0.08) probably_damaging(0.972) TCGA-33-AASB-01 10 72531022 72531022 G T TBATA 3'UTR 0.47 TCGA-33-AASB-01 10 87487660 87487660 C A GRID1 Missense_Mutation p.Q495H 0.47 tolerated(0.13) possibly_damaging(0.827) TCGA-33-AASB-01 11 100168361 100168361 G A CNTN5 Silent p.P773P 0.14 TCGA-33-AASB-01 11 118779046 118779046 C A BCL9L Silent p.R115R 0.46 TCGA-33-AASB-01 11 124180165 124180165 C A OR8D1 Silent p.L166L 0.32 TCGA-33-AASB-01 11 126314926 126314926 A T KIRREL3 Silent p.A400A 0.49 TCGA-33-AASB-01 11 4471260 4471260 G A OR52K2 Missense_Mutation p.A231T 0.41 deleterious(0.03) benign(0.167) TCGA-33-AASB-01 11 47726122 47726122 C A AGBL2 Missense_Mutation p.V187F 0.44 deleterious(0) probably_damaging(0.996) TCGA-33-AASB-01 11 4936889 4936889 G A OR51G2 Missense_Mutation p.T2I 0.43 deleterious_low_confidence(0.03) unknown(0) TCGA-33-AASB-01 11 55038490 55038490 C G TRIM48 3'UTR 0.34 TCGA-33-AASB-01 11 55406170 55406170 C A OR4P4 Missense_Mutation p.L113I 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-33-AASB-01 11 55541202 55541202 T G OR5D13 Missense_Mutation p.S97A 0.25 tolerated(0.65) benign(0.002) TCGA-33-AASB-01 11 55944951 55944951 C G OR5J2 Missense_Mutation p.N286K 0.26 deleterious(0) probably_damaging(0.957) TCGA-33-AASB-01 11 57798646 57798646 G T OR6Q1 Missense_Mutation p.W74C 0.30 tolerated(0.1) benign(0.001) TCGA-33-AASB-01 11 58711041 58711041 T A GLYATL1 Missense_Mutation p.V17E 0.29 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-33-AASB-01 11 58722242 58722242 G A GLYATL1 Splice_Site p.X94_splice 0.29 TCGA-33-AASB-01 11 59132088 59132088 G C OR5AN1 Missense_Mutation p.D53H 0.30 deleterious(0) probably_damaging(0.962) TCGA-33-AASB-01 11 59225138 59225138 G T OR4D6 Missense_Mutation p.K235N 0.20 deleterious(0) possibly_damaging(0.87) TCGA-33-AASB-01 11 59271435 59271435 C A OR4D11 Silent p.P129P 0.22 TCGA-33-AASB-01 11 60107437 60107437 G T MS4A6E Intron 0.30 TCGA-33-AASB-01 11 60150679 60150679 C G MS4A7 Missense_Mutation p.P22R 0.37 tolerated(0.1) possibly_damaging(0.467) TCGA-33-AASB-01 11 62342561 62342561 T C TUT1 3'UTR 0.43 TCGA-33-AASB-01 11 62343298 62343298 C A TUT1 Silent p.L669L 0.09 TCGA-33-AASB-01 11 64111616 64111616 C T CCDC88B Missense_Mutation p.P535S 0.18 tolerated_low_confidence(0.47) benign(0.004) TCGA-33-AASB-01 11 64572079 64572079 C A MEN1 Silent p.G525G 0.16 TCGA-33-AASB-01 11 65107978 65107978 A G DPF2 Missense_Mutation p.N52S 0.19 deleterious(0) probably_damaging(0.912) TCGA-33-AASB-01 11 65146921 65146921 G A SLC25A45 Missense_Mutation p.H89Y 0.21 tolerated(0.84) benign(0.013) TCGA-33-AASB-01 11 65651179 65651179 A C CTSW 3'UTR 0.42 TCGA-33-AASB-01 11 6789579 6789579 C A OR2AG2 Missense_Mutation p.V204L 0.42 deleterious(0.01) possibly_damaging(0.469) TCGA-33-AASB-01 11 68201210 68201210 C A LRP5 Missense_Mutation p.Q1302K 0.05 deleterious(0.01) possibly_damaging(0.791) TCGA-33-AASB-01 11 85961385 85961386 - A EED Frame_Shift_Ins p.T55Nfs*33 0.26 TCGA-33-AASB-01 12 105519840 105519840 G C KIAA1033 Missense_Mutation p.S282T 0.32 tolerated(0.4) benign(0.017) TCGA-33-AASB-01 12 109192773 109192773 C A SSH1 Intron 0.17 TCGA-33-AASB-01 12 110956680 110956680 G T RAD9B Missense_Mutation p.G235V 0.21 deleterious(0) probably_damaging(0.983) TCGA-33-AASB-01 12 112707524 112707524 C A HECTD4 Missense_Mutation p.V625F 0.47 probably_damaging(0.983) TCGA-33-AASB-01 12 113306275 113306275 C A RPH3A Missense_Mutation p.P162H 0.11 deleterious(0) probably_damaging(0.997) TCGA-33-AASB-01 12 124156641 124156641 G C TCTN2 Missense_Mutation p.E77Q 0.17 tolerated(0.07) possibly_damaging(0.638) TCGA-33-AASB-01 12 130935836 130935836 C A RIMBP2 Silent p.R119R 0.15 TCGA-33-AASB-01 12 2763028 2763028 G T CACNA1C Missense_Mutation p.V1416L 0.47 tolerated(0.11) benign(0.032) TCGA-33-AASB-01 12 31545256 31545256 A G DENND5B Silent p.H1137H 0.10 TCGA-33-AASB-01 12 3757667 3757667 T C EFCAB4B Intron 0.46 TCGA-33-AASB-01 12 42840092 42840092 G T PPHLN1 Missense_Mutation p.K450N 0.16 deleterious_low_confidence(0) benign(0.403) TCGA-33-AASB-01 12 45417591 45417591 C A DBX2 Missense_Mutation p.D196Y 0.43 deleterious(0.01) benign(0.393) TCGA-33-AASB-01 12 48919943 48919943 T A OR8S1 Missense_Mutation p.Y177N 0.20 deleterious(0.01) possibly_damaging(0.706) TCGA-33-AASB-01 12 51589825 51589825 C A POU6F1 Silent p.L59L 0.16 TCGA-33-AASB-01 12 51752013 51752013 C A GALNT6 Missense_Mutation p.Q467H 0.11 tolerated(0.07) benign(0.17) TCGA-33-AASB-01 12 52156447 52156447 G A SCN8A Missense_Mutation p.R844Q 0.17 deleterious(0) probably_damaging(0.989) TCGA-33-AASB-01 12 52843342 52843342 G A KRT6B Silent p.L330L 0.18 TCGA-33-AASB-01 12 55524556 55524556 T A OR9K2 Missense_Mutation p.L335H 0.32 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-33-AASB-01 12 63976196 63976196 C A DPY19L2 Missense_Mutation p.C572F 0.26 deleterious(0) benign(0.411) TCGA-33-AASB-01 12 67686477 67686477 T G CAND1 Silent p.L96L 0.09 TCGA-33-AASB-01 12 70986211 70986211 T A PTPRB Missense_Mutation p.H544L 0.32 tolerated(0.29) benign(0.096) TCGA-33-AASB-01 12 72366462 72366462 C - TPH2 Frame_Shift_Del p.P258Lfs*10 0.27 TCGA-33-AASB-01 12 80182515 80182515 C A PPP1R12A Silent p.L905L 0.12 TCGA-33-AASB-01 12 91545456 91545456 C G DCN Missense_Mutation p.G287A 0.22 deleterious(0) probably_damaging(0.915) TCGA-33-AASB-01 12 94975553 94975553 T C TMCC3 Silent p.T280T 0.33 TCGA-33-AASB-01 12 99007284 99007284 C T IKBIP 3'UTR 0.23 TCGA-33-AASB-01 13 111213788 111213788 C - RAB20 Frame_Shift_Del p.E27Sfs*17 0.24 TCGA-33-AASB-01 13 28537231 28537231 G A CDX2 3'UTR 0.38 TCGA-33-AASB-01 13 28537232 28537232 C A CDX2 3'UTR 0.35 TCGA-33-AASB-01 13 40261687 40261687 G T COG6 Missense_Mutation p.R279L 0.49 deleterious(0.01) probably_damaging(0.991) TCGA-33-AASB-01 13 48651280 48651280 C G MED4 Missense_Mutation p.D270H 0.28 deleterious_low_confidence(0) unknown(0) TCGA-33-AASB-01 13 95887087 95887087 T C ABCC4 Missense_Mutation p.E103G 0.33 deleterious(0) probably_damaging(0.993) TCGA-33-AASB-01 13 97485183 97485183 C T HS6ST3 Missense_Mutation p.R383W 0.68 deleterious(0) probably_damaging(1) TCGA-33-AASB-01 14 101201290 101201290 C A DLK1 3'UTR 0.13 TCGA-33-AASB-01 14 106321862 106321862 G T IGHM Missense_Mutation p.F124L 0.23 tolerated(0.72) benign(0) TCGA-33-AASB-01 14 106926448 106926448 G T IGHV3-43 Missense_Mutation p.Q32K 0.27 tolerated_low_confidence(0.3) benign(0.029) TCGA-33-AASB-01 14 19378466 19378466 G T OR11H12 Missense_Mutation p.L291F 0.54 deleterious(0) possibly_damaging(0.739) TCGA-33-AASB-01 14 20295857 20295857 G T OR4N2 Missense_Mutation p.D84Y 0.20 deleterious(0) probably_damaging(0.937) TCGA-33-AASB-01 14 28734067 28734067 G T BNIP3P1 RNA 0.21 TCGA-33-AASB-01 14 51376757 51376757 C A PYGL Missense_Mutation p.G678V 0.33 deleterious(0) probably_damaging(1) TCGA-33-AASB-01 14 63468057 63468057 G A KCNH5 Missense_Mutation p.S142L 0.39 tolerated(0.06) benign(0.116) TCGA-33-AASB-01 14 73659479 73659479 C G PSEN1 Missense_Mutation p.L226V 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-33-AASB-01 14 75469765 75469765 G A EIF2B2 Silent p.R24R 0.41 TCGA-33-AASB-01 14 77737277 77737277 C A NGB Nonsense_Mutation p.E2* 0.27 TCGA-33-AASB-01 14 80669126 80669126 C A DIO2 Missense_Mutation p.G279V 0.20 deleterious(0) probably_damaging(0.992) TCGA-33-AASB-01 14 81209527 81209527 G T CEP128 Missense_Mutation p.Q900K 0.38 deleterious(0.04) benign(0.441) TCGA-33-AASB-01 14 81972448 81972448 T C SEL1L Missense_Mutation p.K160E 0.36 tolerated_low_confidence(0.36) benign(0.338) TCGA-33-AASB-01 14 95574277 95574277 C T DICER1 Missense_Mutation p.A864T 0.24 tolerated(0.38) probably_damaging(0.954) TCGA-33-AASB-01 15 22368885 22368885 T G OR4M2 Missense_Mutation p.L104V 0.10 tolerated(0.26) benign(0.069) TCGA-33-AASB-01 15 23812248 23812248 C G MKRN3 Missense_Mutation p.A440G 0.44 tolerated(0.42) benign(0.003) TCGA-33-AASB-01 15 25415737 25415737 C T SNORD115-3 5'Flank 0.77 TCGA-33-AASB-01 15 30008913 30008913 C T TJP1 Silent p.E1368E 0.20 TCGA-33-AASB-01 15 30664349 30664349 C - CHRFAM7A Splice_Site p.X175_splice 0.21 TCGA-33-AASB-01 15 34032155 34032155 T A RYR3 Missense_Mutation p.D2593E 0.50 probably_damaging(0.929) TCGA-33-AASB-01 15 34646718 34646718 C A NUTM1 Missense_Mutation p.P355T 0.51 tolerated(0.13) possibly_damaging(0.589) TCGA-33-AASB-01 15 34646719 34646719 C A NUTM1 Missense_Mutation p.P355H 0.51 tolerated(0.14) probably_damaging(0.928) TCGA-33-AASB-01 15 41797919 41797919 G A LTK Silent p.L563L 0.64 TCGA-33-AASB-01 15 48063112 48063112 C G SEMA6D Silent p.T784T 0.44 TCGA-33-AASB-01 15 50209160 50209160 A G ATP8B4 Silent p.N704N 0.52 TCGA-33-AASB-01 15 76430186 76430186 G T C15orf27 Silent p.T59T 0.52 TCGA-33-AASB-01 15 76430187 76430187 G T C15orf27 Missense_Mutation p.A60S 0.52 deleterious_low_confidence(0.01) benign(0.131) TCGA-33-AASB-01 15 89386676 89386676 C A ACAN Missense_Mutation p.T283K 0.50 deleterious(0) unknown(0) TCGA-33-AASB-01 15 89395156 89395156 G A ACAN Missense_Mutation p.A720T 0.56 tolerated(0.3) unknown(0) TCGA-33-AASB-01 15 90793914 90793914 G A TTLL13 Missense_Mutation p.E18K 0.53 tolerated_low_confidence(0.1) benign(0.385) TCGA-33-AASB-01 16 1270419 1270419 G T CACNA1H Missense_Mutation p.G2163W 0.48 deleterious(0.02) probably_damaging(0.993) TCGA-33-AASB-01 16 24576151 24576151 A C RBBP6 Silent p.P518P 0.17 TCGA-33-AASB-01 16 26147184 26147184 G T HS3ST4 Missense_Mutation p.S329I 0.33 deleterious(0.03) probably_damaging(0.98) TCGA-33-AASB-01 16 28883543 28883543 G T SH2B1 Missense_Mutation p.G516C 0.39 deleterious(0.02) possibly_damaging(0.906) TCGA-33-AASB-01 16 89293426 89293426 G A ZNF778 Missense_Mutation p.A216T 0.57 tolerated(0.6) benign(0.011) TCGA-33-AASB-01 17 10366718 10366718 C A MYH4 Missense_Mutation p.G248C 0.49 deleterious(0) probably_damaging(0.999) TCGA-33-AASB-01 17 11672535 11672535 G A DNAH9 Missense_Mutation p.G2481S 0.31 probably_damaging(1) TCGA-33-AASB-01 17 27446450 27446450 T C MYO18A Missense_Mutation p.M578V 0.46 deleterious(0.02) benign(0.411) TCGA-33-AASB-01 17 3628361 3628361 G C GSG2 Missense_Mutation p.V378L 0.28 deleterious(0.02) benign(0) TCGA-33-AASB-01 17 39553197 39553197 G T KRT31 Missense_Mutation p.N133K 0.19 deleterious(0) probably_damaging(0.99) TCGA-33-AASB-01 17 39580490 39580490 C A KRT37 Missense_Mutation p.G96C 0.17 tolerated(0.64) benign(0.052) TCGA-33-AASB-01 17 40021220 40021220 G A KLHL11 Missense_Mutation p.S135L 0.30 deleterious(0) benign(0.096) TCGA-33-AASB-01 17 44846142 44846142 G C WNT3 Silent p.L204L 0.13 TCGA-33-AASB-01 17 45369720 45369720 G A ITGB3 Nonsense_Mutation p.W492* 0.10 TCGA-33-AASB-01 17 4905867 4905867 G T KIF1C Missense_Mutation p.D180Y 0.46 deleterious(0) possibly_damaging(0.566) TCGA-33-AASB-01 17 56400110 56400110 C A BZRAP1 Missense_Mutation p.G408C 0.15 deleterious(0.01) possibly_damaging(0.873) TCGA-33-AASB-01 17 61278319 61278319 G C TANC2 Splice_Site p.X183_splice 0.42 TCGA-33-AASB-01 17 61566020 61566020 G T ACE Missense_Mutation p.V773L 0.32 tolerated(0.41) benign(0.007) TCGA-33-AASB-01 17 67109378 67109378 C A ABCA6 Missense_Mutation p.A676S 0.28 deleterious(0) probably_damaging(0.999) TCGA-33-AASB-01 17 72345347 72345347 T A KIF19 Missense_Mutation p.S358T 0.24 deleterious(0) benign(0.313) TCGA-33-AASB-01 17 7578461 7578461 C A TP53 Missense_Mutation p.V157F 0.47 deleterious(0) probably_damaging(0.997) TCGA-33-AASB-01 17 8508280 8508280 A T MYH10 Nonsense_Mutation p.C122* 0.48 TCGA-33-AASB-01 18 12859196 12859196 T A PTPN2 Nonsense_Mutation p.R43* 0.41 TCGA-33-AASB-01 18 22806197 22806197 C A ZNF521 Missense_Mutation p.C562F 0.23 deleterious(0) probably_damaging(0.997) TCGA-33-AASB-01 18 29207071 29207071 C A B4GALT6 Nonsense_Mutation p.E264* 0.11 TCGA-33-AASB-01 18 31319187 31319187 T A ASXL3 Missense_Mutation p.C607S 0.14 benign(0.424) TCGA-33-AASB-01 18 335015 335015 C A COLEC12 Missense_Mutation p.G515W 0.19 deleterious(0) unknown(0) TCGA-33-AASB-01 18 43319508 43319508 C A SLC14A1 Missense_Mutation p.A332D 0.16 deleterious(0) possibly_damaging(0.747) TCGA-33-AASB-01 18 5397204 5397204 C A EPB41L3 Silent p.T898T 0.17 TCGA-33-AASB-01 18 54605804 54605804 A T WDR7 Missense_Mutation p.Q1291L 0.17 tolerated(1) possibly_damaging(0.889) TCGA-33-AASB-01 18 55027270 55027270 G T ST8SIA3 Missense_Mutation p.G302V 0.30 probably_damaging(1) TCGA-33-AASB-01 18 57020489 57020489 C T LMAN1 Missense_Mutation p.R195H 0.16 deleterious(0) probably_damaging(0.999) TCGA-33-AASB-01 18 61654375 61654375 G A SERPINB8 Missense_Mutation p.A330T 0.46 deleterious(0) probably_damaging(0.943) TCGA-33-AASB-01 18 66504267 66504267 A T CCDC102B Missense_Mutation p.E89D 0.14 deleterious(0) probably_damaging(1) TCGA-33-AASB-01 18 67671410 67671410 C A RTTN Missense_Mutation p.V2220L 0.16 tolerated(0.15) benign(0.412) TCGA-33-AASB-01 19 1043068 1043068 T A ABCA7 Missense_Mutation p.L203H 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-33-AASB-01 19 10602619 10602619 C A KEAP1 Missense_Mutation p.R320L 0.53 deleterious(0) possibly_damaging(0.593) TCGA-33-AASB-01 19 11348774 11348774 G A DOCK6 Silent p.S593S 0.25 TCGA-33-AASB-01 19 1486927 1486927 C A PCSK4 Silent p.V331V 0.30 TCGA-33-AASB-01 19 16222693 16222693 G T RAB8A 5'UTR 0.46 TCGA-33-AASB-01 19 16594850 16594850 G T CALR3 Nonsense_Mutation p.S190* 0.38 TCGA-33-AASB-01 19 17885887 17885887 G T FCHO1 Missense_Mutation p.G315W 0.33 deleterious(0.02) probably_damaging(0.92) TCGA-33-AASB-01 19 17885888 17885888 G T FCHO1 Missense_Mutation p.G315V 0.33 tolerated(0.36) benign(0.024) TCGA-33-AASB-01 19 18707530 18707530 A G CRLF1 Missense_Mutation p.V309A 0.14 deleterious(0.05) probably_damaging(0.995) TCGA-33-AASB-01 19 18888184 18888184 C T CRTC1 Missense_Mutation p.R649C 0.39 deleterious(0) probably_damaging(0.999) TCGA-33-AASB-01 19 23329661 23329661 C A ZNF730 3'UTR 0.45 TCGA-33-AASB-01 19 3251032 3251032 G A CELF5 Silent p.Q103Q 0.30 TCGA-33-AASB-01 19 41515163 41515163 G T CYP2B6 Missense_Mutation p.G229W 0.33 deleterious(0) probably_damaging(1) TCGA-33-AASB-01 19 45021168 45021168 G T CEACAM20 RNA 0.46 TCGA-33-AASB-01 19 51410054 51410054 C A KLK4 3'UTR 0.56 TCGA-33-AASB-01 19 52618588 52618588 C A ZNF616 Missense_Mutation p.C610F 0.30 deleterious(0.01) probably_damaging(1) TCGA-33-AASB-01 19 54313064 54313064 A T NLRP12 Missense_Mutation p.L617M 0.47 deleterious(0.03) probably_damaging(0.999) TCGA-33-AASB-01 19 56041184 56041184 G T SBK2 Silent p.I321I 0.50 TCGA-33-AASB-01 19 56373477 56373477 C A NLRP4 Missense_Mutation p.S713Y 0.42 tolerated(0.17) benign(0) TCGA-33-AASB-01 19 57335881 57335881 C T PEG3 Missense_Mutation p.R48K 0.45 deleterious(0) possibly_damaging(0.848) TCGA-33-AASB-01 19 5786479 5786479 G A DUS3L Missense_Mutation p.R521C 0.43 deleterious(0) probably_damaging(0.999) TCGA-33-AASB-01 19 58491322 58491322 T A ZNF606 Silent p.T242T 0.50 TCGA-33-AASB-01 19 58639939 58639939 C A ZNF329 Missense_Mutation p.G311V 0.53 deleterious(0) probably_damaging(0.999) TCGA-33-AASB-01 19 58639940 58639940 C A ZNF329 Missense_Mutation p.G311W 0.52 deleterious(0) probably_damaging(1) TCGA-33-AASB-01 19 58850193 58850193 G T ZSCAN22 Missense_Mutation p.C326F 0.15 deleterious(0) probably_damaging(1) TCGA-33-AASB-01 19 6165942 6165942 C A ACSBG2 Missense_Mutation p.S218R 0.46 deleterious(0.03) possibly_damaging(0.769) TCGA-33-AASB-01 19 8651004 8651004 A T ADAMTS10 Splice_Site p.X887_splice 0.47 TCGA-33-AASB-01 19 9324708 9324708 T A OR7D4 Missense_Mutation p.Q269L 0.36 tolerated(0.12) benign(0.049) TCGA-33-AASB-01 1 100358111 100358111 G T AGL Missense_Mutation p.R1069S 0.20 tolerated(0.15) benign(0.431) TCGA-33-AASB-01 1 103491807 103491807 G T COL11A1 Missense_Mutation p.P288T 0.18 possibly_damaging(0.884) TCGA-33-AASB-01 1 145532559 145532559 A T ITGA10 Missense_Mutation p.T338S 0.29 tolerated(0.07) possibly_damaging(0.714) TCGA-33-AASB-01 1 150915155 150915155 C A SETDB1 Missense_Mutation p.Q222K 0.21 tolerated(0.58) benign(0.01) TCGA-33-AASB-01 1 150956456 150956456 G T ANXA9 Missense_Mutation p.D60Y 0.25 deleterious(0) probably_damaging(0.975) TCGA-33-AASB-01 1 152276738 152276738 C A FLG Missense_Mutation p.D3542Y 0.29 unknown(0) TCGA-33-AASB-01 1 152648874 152648874 G T LCE2C 3'UTR 0.19 TCGA-33-AASB-01 1 152975844 152975844 G T SPRR3 Missense_Mutation p.K116N 0.35 tolerated(0.18) probably_damaging(0.912) TCGA-33-AASB-01 1 155744845 155744845 G A GON4L Silent p.F766F 0.28 TCGA-33-AASB-01 1 158324308 158324308 G T CD1E Missense_Mutation p.W67L 0.29 deleterious(0.02) possibly_damaging(0.59) TCGA-33-AASB-01 1 158369081 158369081 G C OR10T2 Missense_Mutation p.P59R 0.42 deleterious(0) probably_damaging(0.953) TCGA-33-AASB-01 1 158576534 158576534 C T OR10Z1 Silent p.F102F 0.48 TCGA-33-AASB-01 1 160011789 160011789 G C KCNJ10 Silent p.T178T 0.42 TCGA-33-AASB-01 1 160260407 160260407 T A COPA Missense_Mutation p.N1173Y 0.40 deleterious(0) probably_damaging(0.966) TCGA-33-AASB-01 1 161487833 161487833 A T FCGR2A Silent p.T283T 0.31 TCGA-33-AASB-01 1 166926067 166926067 C A ILDR2 Missense_Mutation p.K134N 0.28 tolerated(0.07) benign(0.18) TCGA-33-AASB-01 1 171250106 171250106 G C FMO1 Missense_Mutation p.G270A 0.14 deleterious(0.01) probably_damaging(1) TCGA-33-AASB-01 1 171765740 171765740 G C METTL13 Missense_Mutation p.E648D 0.22 deleterious(0.01) possibly_damaging(0.728) TCGA-33-AASB-01 1 176564378 176564378 G T PAPPA2 Missense_Mutation p.Q546H 0.26 deleterious(0) probably_damaging(0.979) TCGA-33-AASB-01 1 184764820 184764820 T A FAM129A Missense_Mutation p.E693V 0.39 tolerated(0.05) benign(0.038) TCGA-33-AASB-01 1 196227514 196227514 A G KCNT2 Silent p.H1007H 0.31 TCGA-33-AASB-01 1 196648805 196648805 G T CFH Missense_Mutation p.K224N 0.35 tolerated(0.1) benign(0.43) TCGA-33-AASB-01 1 202122871 202122871 C A PTPN7 Silent p.V338V 0.35 TCGA-33-AASB-01 1 202278280 202278280 C A LGR6 Missense_Mutation p.S461Y 0.29 deleterious(0.04) possibly_damaging(0.781) TCGA-33-AASB-01 1 202718185 202718185 T A KDM5B Missense_Mutation p.K635M 0.37 deleterious(0) possibly_damaging(0.541) TCGA-33-AASB-01 1 214819071 214819071 A G CENPF Missense_Mutation p.E2053G 0.45 benign(0.024) TCGA-33-AASB-01 1 215824088 215824088 G T USH2A Missense_Mutation p.T4730N 0.50 probably_damaging(0.986) TCGA-33-AASB-01 1 233807100 233807100 A T KCNK1 Missense_Mutation p.M279L 0.42 tolerated(1) benign(0) TCGA-33-AASB-01 1 240975240 240975240 C A RGS7 Nonsense_Mutation p.E354* 0.36 TCGA-33-AASB-01 1 247655278 247655278 C A OR2W5 RNA 0.22 TCGA-33-AASB-01 1 248023988 248023988 G T TRIM58 Missense_Mutation p.V164L 0.43 tolerated(0.31) benign(0.004) TCGA-33-AASB-01 1 248039523 248039523 C A TRIM58 Missense_Mutation p.P398Q 0.44 deleterious(0.02) possibly_damaging(0.857) TCGA-33-AASB-01 1 248201778 248201779 - A OR2L2 Frame_Shift_Ins p.N71Kfs*13 0.32 TCGA-33-AASB-01 1 248202362 248202362 C T OR2L2 Nonsense_Mutation p.R265* 0.33 TCGA-33-AASB-01 1 29068913 29068914 AG - YTHDF2 Splice_Site p.X45_splice 0.34 TCGA-33-AASB-01 1 32620194 32620194 A G KPNA6 Missense_Mutation p.M4V 0.44 deleterious(0.01) benign(0.08) TCGA-33-AASB-01 1 34066480 34066480 C T CSMD2 Missense_Mutation p.A2283T 0.32 tolerated(0.1) benign(0.014) TCGA-33-AASB-01 1 3669119 3669119 C A CCDC27 Missense_Mutation p.S25Y 0.51 tolerated_low_confidence(0.15) possibly_damaging(0.781) TCGA-33-AASB-01 1 64676439 64676439 G T UBE2U Missense_Mutation p.G86C 0.50 deleterious(0) probably_damaging(1) TCGA-33-AASB-01 1 70339162 70339162 C T LRRC7 Intron 0.37 TCGA-33-AASB-01 1 74957846 74957855 GGTGAACCGG - TNNI3K Frame_Shift_Del p.V851Efs*11 0.37 TCGA-33-AASB-01 1 75672307 75672307 C A SLC44A5 Missense_Mutation p.Q715H 0.45 tolerated(0.07) benign(0.195) TCGA-33-AASB-01 1 75683625 75683625 G A SLC44A5 Missense_Mutation p.A517V 0.38 deleterious(0) possibly_damaging(0.85) TCGA-33-AASB-01 20 2293615 2293615 T A TGM3 Silent p.A204A 0.46 TCGA-33-AASB-01 20 30671746 30671746 C A HCK Silent p.T194T 0.46 TCGA-33-AASB-01 20 31607556 31607556 G T BPIFB2 Silent p.V360V 0.44 TCGA-33-AASB-01 20 33891827 33891827 C G UQCC1 Missense_Mutation p.G271R 0.51 deleterious(0.01) probably_damaging(0.993) TCGA-33-AASB-01 20 34208905 34208905 C T SPAG4 Silent p.T425T 0.42 TCGA-33-AASB-01 20 35944844 35944844 G T MANBAL 3'UTR 0.44 TCGA-33-AASB-01 20 54823888 54823888 C G MC3R 5'UTR 0.39 TCGA-33-AASB-01 20 60589723 60589723 C T TAF4 Missense_Mutation p.M467I 0.19 benign(0.011) TCGA-33-AASB-01 20 61473392 61473392 C - TCFL5 Frame_Shift_Del p.D480Tfs*4 0.15 TCGA-33-AASB-01 21 10942965 10942965 G C TPTE Missense_Mutation p.L208V 0.12 deleterious(0) probably_damaging(0.976) TCGA-33-AASB-01 21 31654453 31654453 C A KRTAP24-1 3'UTR 0.11 TCGA-33-AASB-01 21 32526675 32526675 G T TIAM1 Missense_Mutation p.P1021T 0.15 tolerated(0.09) possibly_damaging(0.859) TCGA-33-AASB-01 21 34051036 34051036 C T SYNJ1 Missense_Mutation p.D516N 0.23 deleterious(0) probably_damaging(0.999) TCGA-33-AASB-01 21 45993776 45993776 C A KRTAP10-4 Nonsense_Mutation p.C47* 0.16 TCGA-33-AASB-01 22 16287618 16287618 C A POTEH Missense_Mutation p.A90S 0.34 deleterious_low_confidence(0.05) benign(0.007) TCGA-33-AASB-01 22 22730569 22730569 G A IGLV5-45 Missense_Mutation p.V22M 0.10 tolerated(0.06) benign(0.201) TCGA-33-AASB-01 22 22868801 22868801 T A ZNF280A Missense_Mutation p.D385V 0.27 deleterious(0.01) possibly_damaging(0.686) TCGA-33-AASB-01 22 22869316 22869316 G T ZNF280A Silent p.I213I 0.21 TCGA-33-AASB-01 22 29695287 29695287 T G EWSR1 Silent p.P553P 0.33 TCGA-33-AASB-01 22 39477203 39477203 G T APOBEC3G Missense_Mutation p.R146L 0.54 tolerated(0.13) benign(0.403) TCGA-33-AASB-01 22 41556722 41556722 C T EP300 Nonsense_Mutation p.Q1223* 0.69 TCGA-33-AASB-01 22 46793611 46793611 G T CELSR1 Nonsense_Mutation p.C1887* 0.58 TCGA-33-AASB-01 22 46793612 46793612 C A CELSR1 Missense_Mutation p.C1887F 0.58 deleterious(0) probably_damaging(0.969) TCGA-33-AASB-01 2 102992423 102992423 C T IL18R1 Silent p.A175A 0.15 TCGA-33-AASB-01 2 103090204 103090204 G T SLC9A4 5'UTR 0.25 TCGA-33-AASB-01 2 116548922 116548922 C T DPP10 Silent p.L568L 0.34 TCGA-33-AASB-01 2 125660574 125660574 C A CNTNAP5 Silent p.A1183A 0.27 TCGA-33-AASB-01 2 130899983 130899983 G T CCDC74B Intron 0.09 TCGA-33-AASB-01 2 135712270 135712270 G T CCNT2 3'UTR 0.32 TCGA-33-AASB-01 2 136362484 136362484 G T R3HDM1 Silent p.V23V 0.31 TCGA-33-AASB-01 2 136362485 136362485 A G R3HDM1 Missense_Mutation p.K24E 0.32 tolerated(0.75) benign(0.101) TCGA-33-AASB-01 2 160628487 160628487 G T LY75 Missense_Mutation p.L1833M 0.11 deleterious(0.02) probably_damaging(0.989) TCGA-33-AASB-01 2 167262992 167262992 T G SCN7A Missense_Mutation p.I1383L 0.46 tolerated(0.09) benign(0.036) TCGA-33-AASB-01 2 168101984 168101984 C A XIRP2 Missense_Mutation p.S1361Y 0.16 probably_damaging(0.979) TCGA-33-AASB-01 2 168104181 168104181 A T XIRP2 Silent p.L2093L 0.17 TCGA-33-AASB-01 2 168107981 168107981 C - XIRP2 Frame_Shift_Del p.T3360Kfs*19 0.15 TCGA-33-AASB-01 2 170897490 170897490 G - UBR3 Frame_Shift_Del p.R1552Pfs*9 0.12 TCGA-33-AASB-01 2 179412707 179412707 C T TTN Missense_Mutation p.D31216N 0.40 TCGA-33-AASB-01 2 183703176 183703176 T C FRZB Missense_Mutation p.E253G 0.19 deleterious(0) probably_damaging(0.975) TCGA-33-AASB-01 2 187693279 187693279 G T ZSWIM2 Missense_Mutation p.P445H 0.31 tolerated(0.29) benign(0.021) TCGA-33-AASB-01 2 188247954 188247954 C A CALCRL Missense_Mutation p.A44S 0.11 tolerated(0.13) possibly_damaging(0.85) TCGA-33-AASB-01 2 189866177 189866177 G A COL3A1 Splice_Site p.X779_splice 0.20 TCGA-33-AASB-01 2 189874991 189874991 G A COL3A1 Missense_Mutation p.S1304N 0.25 unknown(0) TCGA-33-AASB-01 2 200173588 200173588 C A SATB2 Silent p.L545L 0.23 TCGA-33-AASB-01 2 203162101 203162101 G T NOP58 Splice_Site p.X358_splice 0.06 TCGA-33-AASB-01 2 207162069 207162069 C G ZDBF2 Missense_Mutation p.H54D 0.31 deleterious(0.01) benign(0.227) TCGA-33-AASB-01 2 21001099 21001099 C A C2orf43 Missense_Mutation p.R42M 0.27 tolerated(0.07) benign(0.326) TCGA-33-AASB-01 2 219483469 219483469 C T PLCD4 Nonsense_Mutation p.R117* 0.43 TCGA-33-AASB-01 2 220421373 220421374 - A OBSL1 Frame_Shift_Ins p.R1380Lfs*3 0.23 TCGA-33-AASB-01 2 220466014 220466014 A T STK11IP Missense_Mutation p.Q51L 0.24 tolerated(0.14) probably_damaging(0.956) TCGA-33-AASB-01 2 228973570 228973570 T C SPHKAP Missense_Mutation p.D75G 0.21 deleterious(0) probably_damaging(0.945) TCGA-33-AASB-01 2 230253042 230253042 G T DNER Missense_Mutation p.D598E 0.18 deleterious(0.01) probably_damaging(0.966) TCGA-33-AASB-01 2 237998579 237998579 A - COPS8 Frame_Shift_Del p.T92Pfs*50 0.24 TCGA-33-AASB-01 2 26203726 26203726 G C KIF3C Missense_Mutation p.S354C 0.15 probably_damaging(0.975) TCGA-33-AASB-01 2 31570389 31570389 T C XDH Missense_Mutation p.Y1092C 0.27 tolerated(0.1) possibly_damaging(0.684) TCGA-33-AASB-01 2 31609296 31609296 C A XDH Silent p.V259V 0.18 TCGA-33-AASB-01 2 37028521 37028521 C T VIT Missense_Mutation p.T379I 0.15 tolerated(0.15) benign(0.061) TCGA-33-AASB-01 2 45169838 45169838 C A SIX3 Missense_Mutation p.L199M 0.14 tolerated(0.06) possibly_damaging(0.574) TCGA-33-AASB-01 2 49381419 49381419 C A FSHR Missense_Mutation p.R46S 0.45 tolerated(0.25) benign(0.009) TCGA-33-AASB-01 2 69633192 69633192 A C NFU1 Silent p.V169V 0.06 TCGA-33-AASB-01 2 70188705 70188705 C A ASPRV1 Missense_Mutation p.C39F 0.20 tolerated_low_confidence(0.2) benign(0.034) TCGA-33-AASB-01 2 73717604 73717604 G T ALMS1 Missense_Mutation p.D2839Y 0.41 probably_damaging(0.991) TCGA-33-AASB-01 2 73828399 73828399 G T ALMS1 Missense_Mutation p.G3983C 0.14 probably_damaging(0.998) TCGA-33-AASB-01 2 73828400 73828400 G T ALMS1 Missense_Mutation p.G3983V 0.14 possibly_damaging(0.895) TCGA-33-AASB-01 2 77746833 77746833 A T LRRTM4 Missense_Mutation p.D54E 0.34 tolerated(0.61) benign(0.423) TCGA-33-AASB-01 2 80874783 80874783 C G CTNNA2 Missense_Mutation p.S835C 0.11 tolerated(0.06) benign(0.315) TCGA-33-AASB-01 2 85097390 85097390 C - TRABD2A Frame_Shift_Del p.E210Kfs*7 0.29 TCGA-33-AASB-01 2 95841942 95841942 C G ZNF2 5'UTR 0.27 TCGA-33-AASB-01 3 100328776 100328776 G A GPR128 Missense_Mutation p.G26R 0.12 deleterious(0) probably_damaging(0.96) TCGA-33-AASB-01 3 101384419 101384419 C A ZBTB11 Nonsense_Mutation p.G338* 0.09 TCGA-33-AASB-01 3 108163556 108163556 C A MYH15 Missense_Mutation p.R882S 0.56 deleterious(0) benign(0.415) TCGA-33-AASB-01 3 116163774 116163774 G T LSAMP Missense_Mutation p.N35K 0.56 tolerated(0.55) benign(0.004) TCGA-33-AASB-01 3 122420316 122420316 A C PARP14 Missense_Mutation p.E972A 0.16 tolerated(0.11) benign(0.009) TCGA-33-AASB-01 3 13371971 13371971 C A NUP210 Missense_Mutation p.V1367F 0.15 deleterious(0.04) benign(0.011) TCGA-33-AASB-01 3 13860637 13860637 C A WNT7A Missense_Mutation p.G285V 0.12 deleterious(0) probably_damaging(0.995) TCGA-33-AASB-01 3 13860638 13860638 C A WNT7A Missense_Mutation p.G285C 0.12 deleterious(0) probably_damaging(0.969) TCGA-33-AASB-01 3 141162660 141162660 G A ZBTB38 Missense_Mutation p.R477K 0.05 tolerated(0.06) probably_damaging(0.996) TCGA-33-AASB-01 3 141464177 141464177 C G RNF7 3'UTR 0.59 TCGA-33-AASB-01 3 143185912 143185912 C A SLC9A9 Missense_Mutation p.G479V 0.17 tolerated(0.09) probably_damaging(0.981) TCGA-33-AASB-01 3 147108843 147108843 C T ZIC4 Silent p.P343P 0.10 TCGA-33-AASB-01 3 164907883 164907883 A T SLITRK3 Missense_Mutation p.W246R 0.19 deleterious(0) probably_damaging(0.999) TCGA-33-AASB-01 3 165547324 165547324 C - BCHE Frame_Shift_Del p.A500Qfs*30 0.24 TCGA-33-AASB-01 3 167086273 167086273 C T ZBBX Missense_Mutation p.R53K 0.18 tolerated(1) benign(0.009) TCGA-33-AASB-01 3 167512493 167512493 G T SERPINI1 Missense_Mutation p.M254I 0.18 tolerated(1) benign(0.005) TCGA-33-AASB-01 3 169485747 169485747 T G ACTRT3 Missense_Mutation p.M198L 0.07 tolerated(0.14) benign(0.001) TCGA-33-AASB-01 3 195597208 195597208 C T TNK2 Intron 0.27 TCGA-33-AASB-01 3 195953863 195953863 C A SLC51A Missense_Mutation p.T54N 0.45 tolerated(0.1) benign(0.006) TCGA-33-AASB-01 3 196199471 196199471 C T RNF168 Missense_Mutation p.G312E 0.48 tolerated(0.23) benign(0.025) TCGA-33-AASB-01 3 3079009 3079009 G T CNTN4 Missense_Mutation p.A697S 0.21 tolerated(0.29) benign(0.074) TCGA-33-AASB-01 3 3136994 3136994 C T IL5RA Missense_Mutation p.G282R 0.17 tolerated(0.07) benign(0.178) TCGA-33-AASB-01 3 361430 361430 C T CHL1 5'UTR 0.20 TCGA-33-AASB-01 3 37038164 37038164 G C MLH1 Missense_Mutation p.K57N 0.10 deleterious(0) probably_damaging(0.999) TCGA-33-AASB-01 3 38639360 38639360 G T SCN5A Missense_Mutation p.Q708K 0.25 tolerated(1) benign(0.007) TCGA-33-AASB-01 3 38651436 38651436 C A SCN5A Silent p.G241G 0.12 TCGA-33-AASB-01 3 48631798 48631798 C T COL7A1 Intron 0.19 TCGA-33-AASB-01 3 48698983 48698983 T C CELSR3 Missense_Mutation p.Y362C 0.40 deleterious(0) probably_damaging(1) TCGA-33-AASB-01 3 52543918 52543918 C A STAB1 Missense_Mutation p.R794S 0.38 deleterious(0) probably_damaging(1) TCGA-33-AASB-01 3 74413710 74413710 G C CNTN3 Nonsense_Mutation p.S374* 0.12 TCGA-33-AASB-01 3 89390185 89390185 C G EPHA3 Missense_Mutation p.R312G 0.24 deleterious(0.01) benign(0.436) TCGA-33-AASB-01 3 97123997 97123997 C A EPHA6 Missense_Mutation p.P537H 0.48 deleterious(0) probably_damaging(0.983) TCGA-33-AASB-01 3 98072695 98072695 G T OR5K4 5'Flank 0.58 TCGA-33-AASB-01 4 129100598 129100598 C T LARP1B Missense_Mutation p.P645L 0.45 deleterious(0) probably_damaging(0.948) TCGA-33-AASB-01 4 13604910 13604910 T A BOD1L1 Missense_Mutation p.K1205M 0.49 probably_damaging(0.969) TCGA-33-AASB-01 4 138449788 138449788 G A PCDH18 Missense_Mutation p.L862F 0.41 tolerated(1) probably_damaging(0.99) TCGA-33-AASB-01 4 155749037 155749037 A G RBM46 Missense_Mutation p.S474G 0.10 tolerated(0.26) benign(0.021) TCGA-33-AASB-01 4 175224945 175224945 G T CEP44 Missense_Mutation p.C110F 0.54 deleterious(0) probably_damaging(0.991) TCGA-33-AASB-01 4 17528507 17528507 A G CLRN2 Silent p.R167R 0.28 TCGA-33-AASB-01 4 184241361 184241361 A G CLDN22 Missense_Mutation p.V4A 0.37 tolerated(0.29) benign(0.001) TCGA-33-AASB-01 4 189013082 189013082 C A TRIML2 Missense_Mutation p.L203F 0.41 deleterious(0.01) possibly_damaging(0.585) TCGA-33-AASB-01 4 42145826 42145826 T A BEND4 Missense_Mutation p.T225S 0.15 tolerated_low_confidence(0.36) benign(0.026) TCGA-33-AASB-01 4 47525187 47525187 A G ATP10D Missense_Mutation p.E215G 0.23 deleterious(0) probably_damaging(0.911) TCGA-33-AASB-01 4 55968152 55968152 T A KDR Missense_Mutation p.R726S 0.48 deleterious(0) probably_damaging(1) TCGA-33-AASB-01 4 66467511 66467511 G T EPHA5 Missense_Mutation p.S253Y 0.30 deleterious(0.01) probably_damaging(0.982) TCGA-33-AASB-01 4 69095214 69095214 C G TMPRSS11B Missense_Mutation p.W236S 0.35 deleterious(0) probably_damaging(1) TCGA-33-AASB-01 4 69972971 69972971 G A UGT2B7 Missense_Mutation p.D361N 0.20 deleterious(0.01) possibly_damaging(0.457) TCGA-33-AASB-01 4 70346580 70346580 T A UGT2B4 Silent p.P453P 0.14 TCGA-33-AASB-01 4 70596316 70596316 G T SULT1B1 Missense_Mutation p.H227Q 0.27 deleterious(0.03) probably_damaging(0.951) TCGA-33-AASB-01 4 73156754 73156754 A T ADAMTS3 Missense_Mutation p.C917S 0.54 deleterious(0.01) probably_damaging(0.982) TCGA-33-AASB-01 4 74309098 74309098 G T AFP Missense_Mutation p.S217I 0.25 deleterious(0.01) possibly_damaging(0.83) TCGA-33-AASB-01 4 88732981 88732981 A C IBSP Silent p.R291R 0.20 TCGA-33-AASB-01 4 90169426 90169426 C A GPRIN3 Missense_Mutation p.M612I 0.25 tolerated(0.13) benign(0.01) TCGA-33-AASB-01 5 13883152 13883152 G T DNAH5 Missense_Mutation p.A1012E 0.14 possibly_damaging(0.587) TCGA-33-AASB-01 5 140222980 140222980 G T PCDHA8 Missense_Mutation p.A692S 0.51 tolerated_low_confidence(0.23) benign(0.018) TCGA-33-AASB-01 5 140711095 140711095 C T PCDHGA1 Missense_Mutation p.H282Y 0.38 tolerated_low_confidence(0.1) possibly_damaging(0.699) TCGA-33-AASB-01 5 14330945 14330945 G C TRIO Missense_Mutation p.G597A 0.16 benign(0.003) TCGA-33-AASB-01 5 151234670 151234670 G T GLRA1 Missense_Mutation p.L210I 0.48 tolerated(0.21) probably_damaging(0.948) TCGA-33-AASB-01 5 15928532 15928532 G - FBXL7 Frame_Shift_Del p.G221Afs*31 0.20 TCGA-33-AASB-01 5 159776682 159776682 G T C1QTNF2 Silent p.P162P 0.43 TCGA-33-AASB-01 5 160886694 160886694 C T GABRB2 Missense_Mutation p.G132R 0.21 tolerated(0.07) probably_damaging(0.997) TCGA-33-AASB-01 5 16572152 16572152 C A FAM134B Missense_Mutation p.R127L 0.24 tolerated(0.37) benign(0.008) TCGA-33-AASB-01 5 173534535 173534535 C A NSG2 3'UTR 0.60 TCGA-33-AASB-01 5 177686739 177686739 C T COL23A1 Missense_Mutation p.G238R 0.37 deleterious(0) probably_damaging(0.969) TCGA-33-AASB-01 5 22078744 22078744 C G CDH12 Silent p.L14L 0.30 TCGA-33-AASB-01 5 24488018 24488018 G T CDH10 Missense_Mutation p.N707K 0.29 tolerated(0.07) benign(0.188) TCGA-33-AASB-01 5 31799543 31799543 C A PDZD2 Missense_Mutation p.P63H 0.17 deleterious(0.01) possibly_damaging(0.907) TCGA-33-AASB-01 5 35795804 35795804 G T SPEF2 Splice_Site p.X1580_splice 0.20 TCGA-33-AASB-01 5 35875644 35875644 C A IL7R Silent p.P277P 0.28 TCGA-33-AASB-01 5 40730399 40730399 G A TTC33 Missense_Mutation p.P90S 0.34 deleterious(0.03) possibly_damaging(0.606) TCGA-33-AASB-01 5 41150056 41150056 A G C6 Missense_Mutation p.S788P 0.17 deleterious(0) probably_damaging(0.986) TCGA-33-AASB-01 5 43547906 43547906 T G PAIP1 Missense_Mutation p.Q182P 0.16 tolerated(0.36) benign(0.013) TCGA-33-AASB-01 5 52344223 52344223 G T ITGA2 Missense_Mutation p.G140W 0.26 deleterious(0) probably_damaging(1) TCGA-33-AASB-01 5 52351929 52351929 C T ITGA2 Missense_Mutation p.A349V 0.23 deleterious(0.05) benign(0.102) TCGA-33-AASB-01 5 61669638 61669638 G T KIF2A Missense_Mutation p.D629Y 0.25 deleterious(0) probably_damaging(0.986) TCGA-33-AASB-01 5 6378638 6378638 C A MED10 5'UTR 0.30 TCGA-33-AASB-01 5 89949262 89949262 G T GPR98 Nonsense_Mutation p.E1291* 0.41 TCGA-33-AASB-01 5 9108334 9108334 C A SEMA5A Missense_Mutation p.R664L 0.26 tolerated(0.11) benign(0.047) TCGA-33-AASB-01 6 110086281 110086281 G A FIG4 Silent p.V500V 0.19 TCGA-33-AASB-01 6 129774163 129774163 T A LAMA2 Missense_Mutation p.C2154S 0.14 deleterious(0) probably_damaging(1) TCGA-33-AASB-01 6 132874354 132874354 G T TAAR8 Missense_Mutation p.G175W 0.11 deleterious(0) probably_damaging(0.999) TCGA-33-AASB-01 6 132874355 132874355 G A TAAR8 Missense_Mutation p.G175E 0.11 deleterious(0.03) possibly_damaging(0.687) TCGA-33-AASB-01 6 135254033 135254033 C A ALDH8A1 Missense_Mutation p.A244S 0.17 tolerated(0.07) possibly_damaging(0.874) TCGA-33-AASB-01 6 1390751 1390751 G T FOXF2 Missense_Mutation p.R190L 0.58 tolerated(0.05) probably_damaging(0.997) TCGA-33-AASB-01 6 139223743 139223743 C A ECT2L Silent p.I898I 0.09 TCGA-33-AASB-01 6 150004346 150004346 T A LATS1 Missense_Mutation p.R627W 0.20 deleterious(0) possibly_damaging(0.894) TCGA-33-AASB-01 6 152651518 152651518 G A SYNE1 Nonsense_Mutation p.Q4768* 0.11 TCGA-33-AASB-01 6 159457424 159457424 C T TAGAP Missense_Mutation p.R544K 0.21 tolerated(1) benign(0.005) TCGA-33-AASB-01 6 159457785 159457785 C G TAGAP Missense_Mutation p.E424Q 0.23 deleterious(0.03) probably_damaging(0.987) TCGA-33-AASB-01 6 166571949 166571949 G T T Missense_Mutation p.H388N 0.22 tolerated(0.21) benign(0.15) TCGA-33-AASB-01 6 17629048 17629048 T C NUP153 Missense_Mutation p.K1128E 0.62 deleterious(0.02) probably_damaging(0.991) TCGA-33-AASB-01 6 26056175 26056175 G A HIST1H1C Missense_Mutation p.P161L 0.13 deleterious(0) unknown(0) TCGA-33-AASB-01 6 26205238 26205238 C T HIST1H4E 3'UTR 0.54 TCGA-33-AASB-01 6 27115271 27115271 G A HIST1H2AH Missense_Mutation p.E122K 0.11 tolerated_low_confidence(0.21) benign(0.014) TCGA-33-AASB-01 6 28253366 28253366 G T PGBD1 Missense_Mutation p.M145I 0.50 tolerated_low_confidence(0.21) benign(0.002) TCGA-33-AASB-01 6 30121827 30121827 G T TRIM10 Silent p.T455T 0.50 TCGA-33-AASB-01 6 30698294 30698294 C T FLOT1 Missense_Mutation p.E334K 0.20 deleterious(0) possibly_damaging(0.79) TCGA-33-AASB-01 6 3738312 3738312 C A PXDC1 Silent p.T109T 0.61 TCGA-33-AASB-01 6 42852448 42852448 C T RPL7L1 Silent p.L128L 0.08 TCGA-33-AASB-01 6 42932124 42932124 C T PEX6 Silent p.E964E 0.14 TCGA-33-AASB-01 6 49419251 49419251 T A MUT Missense_Mutation p.K420N 0.33 tolerated_low_confidence(0.38) benign(0.051) TCGA-33-AASB-01 6 49936432 49936432 C A DEFB113 Missense_Mutation p.K69N 0.38 deleterious_low_confidence(0.04) benign(0.172) TCGA-33-AASB-01 6 69759193 69759193 G T BAI3 Missense_Mutation p.G763V 0.09 deleterious(0) possibly_damaging(0.845) TCGA-33-AASB-01 6 72945405 72945405 G T RIMS1 Missense_Mutation p.D611Y 0.42 deleterious(0) benign(0.04) TCGA-33-AASB-01 6 73751711 73751711 C A KCNQ5 Missense_Mutation p.S181Y 0.14 deleterious(0) probably_damaging(0.997) TCGA-33-AASB-01 6 75812373 75812373 T A COL12A1 Silent p.P2785P 0.33 TCGA-33-AASB-01 6 89859047 89859047 G T PM20D2 Missense_Mutation p.G177W 0.35 deleterious(0) probably_damaging(1) TCGA-33-AASB-01 7 100087052 100087052 G - NYAP1 Frame_Shift_Del p.V572Cfs*2 0.32 TCGA-33-AASB-01 7 100180051 100180051 G C LRCH4 Silent p.P84P 0.19 TCGA-33-AASB-01 7 100467998 100467998 C T TRIP6 Silent p.L248L 0.36 TCGA-33-AASB-01 7 100677171 100677171 C A MUC17 Missense_Mutation p.T825N 0.17 unknown(0) TCGA-33-AASB-01 7 102874270 102874270 A T DPY19L2P2 RNA 0.30 TCGA-33-AASB-01 7 107706961 107706961 C A LAMB4 Missense_Mutation p.G844V 0.33 deleterious(0) probably_damaging(1) TCGA-33-AASB-01 7 111368662 111368662 A G DOCK4 Missense_Mutation p.C1857R 0.11 tolerated_low_confidence(0.1) probably_damaging(0.923) TCGA-33-AASB-01 7 119915517 119915517 G C KCND2 Silent p.L277L 0.50 TCGA-33-AASB-01 7 120911446 120911446 G T CPED1 Nonsense_Mutation p.E944* 0.12 TCGA-33-AASB-01 7 121691544 121691544 G C PTPRZ1 Missense_Mutation p.R2049S 0.29 deleterious(0.04) benign(0.122) TCGA-33-AASB-01 7 128315858 128315858 G C FAM71F2 Missense_Mutation p.G104R 0.17 deleterious(0.03) possibly_damaging(0.86) TCGA-33-AASB-01 7 128492713 128492713 G T FLNC Nonsense_Mutation p.E1971* 0.12 TCGA-33-AASB-01 7 134896216 134896216 C A WDR91 Silent p.R13R 0.20 TCGA-33-AASB-01 7 140045703 140045703 C A SLC37A3 Silent p.L364L 0.18 TCGA-33-AASB-01 7 140301523 140301523 C A DENND2A Missense_Mutation p.R225S 0.39 tolerated(0.42) benign(0.002) TCGA-33-AASB-01 7 141672548 141672548 C A TAS2R38 Missense_Mutation p.W314C 0.31 deleterious(0.03) benign(0.405) TCGA-33-AASB-01 7 142149020 142149020 G T TRBV5-5 Nonsense_Mutation p.S84* 0.18 TCGA-33-AASB-01 7 142983862 142983862 C A TMEM139 Silent p.V197V 0.15 TCGA-33-AASB-01 7 15427123 15427123 G T AGMO Missense_Mutation p.P289T 0.17 deleterious(0.02) benign(0.183) TCGA-33-AASB-01 7 157370796 157370796 G A PTPRN2 Silent p.L845L 0.28 TCGA-33-AASB-01 7 20826437 20826437 C A SP8 5'UTR 0.32 TCGA-33-AASB-01 7 20826438 20826438 C G SP8 5'UTR 0.33 TCGA-33-AASB-01 7 21721301 21721301 T C DNAH11 Missense_Mutation p.V1827A 0.16 benign(0) TCGA-33-AASB-01 7 21760422 21760422 A G DNAH11 Missense_Mutation p.Y2412C 0.25 benign(0.159) TCGA-33-AASB-01 7 24856270 24856270 C A OSBPL3 Missense_Mutation p.M662I 0.14 deleterious(0.05) benign(0.026) TCGA-33-AASB-01 7 25266526 25266526 G T NPVF Silent p.A86A 0.34 TCGA-33-AASB-01 7 31887597 31887597 G C PDE1C Nonsense_Mutation p.S382* 0.18 TCGA-33-AASB-01 7 31890296 31890296 G C PDE1C Nonsense_Mutation p.Y330* 0.04 TCGA-33-AASB-01 7 34867100 34867100 C A NPSR1 Missense_Mutation p.T189K 0.17 tolerated(1) benign(0.002) TCGA-33-AASB-01 7 44189417 44189417 C A GCK Silent p.V208V 0.09 TCGA-33-AASB-01 7 50660739 50660747 AGAGAATTT - GRB10 In_Frame_Del p.K563_S565del 0.19 TCGA-33-AASB-01 7 57187503 57187503 A C ZNF479 3'UTR 0.33 TCGA-33-AASB-01 7 57522221 57522221 G C ZNF716 Missense_Mutation p.C32S 0.18 deleterious(0) possibly_damaging(0.463) TCGA-33-AASB-01 7 5941336 5941336 G A CCZ1 Splice_Site p.X146_splice 0.38 TCGA-33-AASB-01 7 82997160 82997160 C A SEMA3E Missense_Mutation p.R690S 0.27 tolerated(0.7) benign(0) TCGA-33-AASB-01 7 89897653 89897653 A T C7orf63 Missense_Mutation p.I163F 0.17 deleterious(0) probably_damaging(0.96) TCGA-33-AASB-01 7 91667768 91667768 A T AKAP9 Missense_Mutation p.Q1458H 0.47 probably_damaging(0.999) TCGA-33-AASB-01 8 10468023 10468023 G T RP1L1 Silent p.P1195P 0.19 TCGA-33-AASB-01 8 105105709 105105709 G A RIMS2 Intron 0.20 TCGA-33-AASB-01 8 107719208 107719208 C G OXR1 Missense_Mutation p.Q488E 0.10 tolerated(1) benign(0.001) TCGA-33-AASB-01 8 124381335 124381335 C A ATAD2 Missense_Mutation p.A338S 0.26 tolerated(0.55) benign(0.004) TCGA-33-AASB-01 8 12580637 12580637 G C LONRF1 Missense_Mutation p.L764V 0.16 deleterious(0) probably_damaging(0.968) TCGA-33-AASB-01 8 139729111 139729111 C - COL22A1 Frame_Shift_Del p.G786Efs*29 0.31 TCGA-33-AASB-01 8 141436726 141436726 G A TRAPPC9 Missense_Mutation p.L390F 0.10 tolerated(0.11) probably_damaging(0.986) TCGA-33-AASB-01 8 18079591 18079591 A G NAT1 Missense_Mutation p.Y74C 0.29 tolerated(0.06) probably_damaging(0.991) TCGA-33-AASB-01 8 23702534 23702534 G T STC1 Silent p.R165R 0.14 TCGA-33-AASB-01 8 3019736 3019736 C A CSMD1 Missense_Mutation p.R1930L 0.64 probably_damaging(0.977) TCGA-33-AASB-01 8 35579816 35579816 T G UNC5D Silent p.L402L 0.34 TCGA-33-AASB-01 8 35631976 35631976 C T UNC5D Nonsense_Mutation p.Q880* 0.27 TCGA-33-AASB-01 8 39775484 39775484 G C IDO1 Missense_Mutation p.E60Q 0.41 tolerated(0.17) benign(0.25) TCGA-33-AASB-01 8 52323834 52323834 G T PXDNL Missense_Mutation p.L680I 0.32 tolerated(0.16) benign(0.389) TCGA-33-AASB-01 8 95841212 95841212 A G INTS8 Silent p.Q176Q 0.18 TCGA-33-AASB-01 9 104433385 104433385 G T GRIN3A Missense_Mutation p.L437I 0.26 deleterious(0.01) possibly_damaging(0.687) TCGA-33-AASB-01 9 107266831 107266831 G A OR13F1 Silent p.G96G 0.28 TCGA-33-AASB-01 9 108484814 108484814 G T TMEM38B Splice_Site p.X152_splice 0.17 TCGA-33-AASB-01 9 118974005 118974005 A G PAPPA Missense_Mutation p.Y571C 0.07 deleterious(0) probably_damaging(0.926) TCGA-33-AASB-01 9 119903751 119903751 G A ASTN2 Intron 0.36 TCGA-33-AASB-01 9 120474938 120474938 G T TLR4 Nonsense_Mutation p.E178* 0.20 TCGA-33-AASB-01 9 123199653 123199653 T C CDK5RAP2 Missense_Mutation p.Y1292C 0.36 tolerated(0.27) benign(0.001) TCGA-33-AASB-01 9 125143995 125143995 G T PTGS1 Missense_Mutation p.R244L 0.21 deleterious(0.02) benign(0.225) TCGA-33-AASB-01 9 135073526 135073526 G T NTNG2 Missense_Mutation p.K129N 0.23 deleterious(0) probably_damaging(1) TCGA-33-AASB-01 9 27949698 27949698 G T LINGO2 Silent p.R324R 0.11 TCGA-33-AASB-01 9 34976595 34976595 G T KIAA1045 Missense_Mutation p.R236L 0.21 tolerated(0.33) benign(0.01) TCGA-33-AASB-01 9 77377589 77377589 G T TRPM6 Missense_Mutation p.P1333H 0.05 tolerated_low_confidence(0.6) benign(0.001) TCGA-33-AASB-01 9 94486452 94486452 G T ROR2 Missense_Mutation p.T775N 0.11 tolerated(0.07) probably_damaging(0.968) TCGA-33-AASB-01 9 97718195 97718195 C A C9orf3 Nonsense_Mutation p.Y590* 0.16 TCGA-33-AASB-01 X 101823515 101823515 G T NXF4 RNA 0.44 TCGA-33-AASB-01 X 105937357 105937357 A G RNF128 Missense_Mutation p.N15S 0.65 deleterious(0.02) benign(0.032) TCGA-33-AASB-01 X 117044048 117044048 G A KLHL13 Silent p.D197D 0.62 TCGA-33-AASB-01 X 1407661 1407661 G T CSF2RA Missense_Mutation p.G118V 0.14 deleterious(0) possibly_damaging(0.907) TCGA-33-AASB-01 X 140969328 140969328 A C MAGEC3 Missense_Mutation p.T219P 0.57 deleterious(0) possibly_damaging(0.803) TCGA-33-AASB-01 X 150789452 150789452 A T PASD1 Missense_Mutation p.K86N 0.68 deleterious(0) probably_damaging(0.983) TCGA-33-AASB-01 X 153657478 153657478 G T ATP6AP1 Silent p.L82L 0.59 TCGA-33-AASB-01 X 155004208 155004208 G A SPRY3 Missense_Mutation p.M225I 0.10 tolerated(0.08) benign(0.192) TCGA-33-AASB-01 X 155232570 155232570 G A IL9R Splice_Site p.X10_splice 0.19 TCGA-33-AASB-01 X 1584765 1584765 C T P2RY8 Silent p.R229R 0.55 TCGA-33-AASB-01 X 18183173 18183173 C A BEND2 Nonsense_Mutation p.E786* 0.40 TCGA-33-AASB-01 X 18183174 18183174 C A BEND2 Missense_Mutation p.Q785H 0.38 tolerated(0.08) benign(0.191) TCGA-33-AASB-01 X 21534730 21534730 G T CNKSR2 Missense_Mutation p.W313L 0.50 deleterious(0.02) probably_damaging(0.989) TCGA-33-AASB-01 X 27840048 27840048 G T MAGEB10 Missense_Mutation p.G209C 0.48 tolerated(0.16) probably_damaging(1) TCGA-33-AASB-01 X 48673176 48673176 G A HDAC6 Intron 0.56 TCGA-33-AASB-01 X 76225915 76225915 C A MIR325 RNA 0.55 TCGA-33-AASB-01 X 99551225 99551225 G A PCDH19 3'UTR 0.26 TCGA-33-AASB-01 Y 23563422 23563422 C A RBMY2EP RNA 0.22 TCGA-33-AASD-01 10 117001380 117001380 G T ATRNL1 Missense_Mutation p.G518V 0.21 deleterious(0.05) possibly_damaging(0.473) TCGA-33-AASD-01 10 119014848 119014848 T C SLC18A2 Missense_Mutation p.V254A 0.52 deleterious(0.05) possibly_damaging(0.466) TCGA-33-AASD-01 10 124266312 124266312 G A HTRA1 Missense_Mutation p.G295R 0.30 deleterious(0) probably_damaging(1) TCGA-33-AASD-01 10 129913829 129913829 C T MKI67 Silent p.Q281Q 0.56 TCGA-33-AASD-01 10 17865126 17865126 G T MRC1L1 Missense_Mutation p.V39L 0.73 benign(0.001) TCGA-33-AASD-01 10 43869943 43869943 C - FXYD4 Frame_Shift_Del p.P22Hfs*18 0.39 TCGA-33-AASD-01 10 55566680 55566680 G T PCDH15 Missense_Mutation p.P1569T 0.55 deleterious_low_confidence(0.01) benign(0.115) TCGA-33-AASD-01 10 84733608 84733608 G T NRG3 Missense_Mutation p.G450V 0.83 tolerated(0.09) possibly_damaging(0.597) TCGA-33-AASD-01 10 88950494 88950494 T A FAM35A 3'UTR 0.36 TCGA-33-AASD-01 11 100211284 100211284 A G CNTN5 Silent p.L940L 0.35 TCGA-33-AASD-01 11 1018537 1018537 C G MUC6 Missense_Mutation p.V1422L 0.29 unknown(0) TCGA-33-AASD-01 11 111896384 111896384 C T DLAT Missense_Mutation p.P63L 0.45 tolerated(0.69) benign(0) TCGA-33-AASD-01 11 113934863 113934863 G A ZBTB16 Missense_Mutation p.G281R 0.29 deleterious(0) probably_damaging(0.988) TCGA-33-AASD-01 11 117109630 117109630 A G RNF214 Missense_Mutation p.T141A 0.42 tolerated_low_confidence(0.77) benign(0) TCGA-33-AASD-01 11 118367036 118367036 A G KMT2A Missense_Mutation p.N1873S 0.43 probably_damaging(0.986) TCGA-33-AASD-01 11 123777858 123777858 C T OR8D4 Silent p.T240T 0.39 TCGA-33-AASD-01 11 123909700 123909700 G T OR10G7 Missense_Mutation p.N3K 0.14 deleterious(0) benign(0.055) TCGA-33-AASD-01 11 124121054 124121054 G AT OR8G1 Frame_Shift_Ins p.S211Nfs*22 0.33 TCGA-33-AASD-01 11 124189462 124189462 G T OR8D2 Missense_Mutation p.T211K 0.49 deleterious(0) possibly_damaging(0.777) TCGA-33-AASD-01 11 124310904 124310904 G T OR8B8 Silent p.P26P 0.29 TCGA-33-AASD-01 11 126162571 126162571 C T TIRAP Silent p.C89C 0.43 TCGA-33-AASD-01 11 14277234 14277234 C A SPON1 RNA 0.22 TCGA-33-AASD-01 11 32975556 32975556 C T QSER1 Missense_Mutation p.S1315L 0.29 tolerated(0.56) benign(0) TCGA-33-AASD-01 11 4471010 4471010 C G OR52K2 Silent p.G147G 0.53 TCGA-33-AASD-01 11 4843433 4843433 C A OR51F2 Missense_Mutation p.S273Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-33-AASD-01 11 55861337 55861337 C A OR8I2 Missense_Mutation p.A185E 0.36 deleterious(0.04) probably_damaging(0.91) TCGA-33-AASD-01 11 55904448 55904448 C A OR8J3 Silent p.T249T 0.39 TCGA-33-AASD-01 11 57156110 57156110 C T PRG2 Silent p.Q146Q 0.44 TCGA-33-AASD-01 11 57886582 57886582 C A OR9I1 Missense_Mutation p.C112F 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-33-AASD-01 11 57971245 57971245 C G OR1S2 Missense_Mutation p.V137L 0.40 deleterious(0.01) benign(0.029) TCGA-33-AASD-01 11 58190254 58190254 T A OR5B2 Missense_Mutation p.I161L 0.34 deleterious_low_confidence(0) benign(0.008) TCGA-33-AASD-01 11 59190204 59190204 C A OR5A2 Missense_Mutation p.V75L 0.32 tolerated(0.15) benign(0.103) TCGA-33-AASD-01 11 63069908 63069908 G T SLC22A10 Missense_Mutation p.R393L 0.36 deleterious(0.03) possibly_damaging(0.517) TCGA-33-AASD-01 11 64676594 64676594 T A ATG2A Missense_Mutation p.S745C 0.42 tolerated(0.19) possibly_damaging(0.447) TCGA-33-AASD-01 11 68517731 68517731 C T MTL5 Missense_Mutation p.R133H 0.25 deleterious(0) probably_damaging(0.98) TCGA-33-AASD-01 11 6964350 6964350 A T ZNF215 Missense_Mutation p.S174C 0.45 deleterious(0) possibly_damaging(0.87) TCGA-33-AASD-01 11 7334656 7334656 G C SYT9 Missense_Mutation p.L176F 0.20 tolerated(0.08) possibly_damaging(0.736) TCGA-33-AASD-01 11 73796724 73796724 T A C2CD3 Silent p.L1283L 0.40 TCGA-33-AASD-01 11 73988030 73988030 C T P4HA3 Silent p.T445T 0.54 TCGA-33-AASD-01 11 8772183 8772183 C A ST5 Missense_Mutation p.R22L 0.26 deleterious_low_confidence(0.02) benign(0.012) TCGA-33-AASD-01 11 89409291 89409291 C T FOLH1B RNA 0.31 TCGA-33-AASD-01 11 92087891 92087891 G T FAT3 Missense_Mutation p.L871F 0.66 probably_damaging(0.998) TCGA-33-AASD-01 11 94917639 94917639 C T SESN3 Silent p.K294K 0.22 TCGA-33-AASD-01 12 103249094 103249094 G T PAH Silent p.R176R 0.21 TCGA-33-AASD-01 12 10601965 10601965 A T KLRC1 Silent p.P120P 0.37 TCGA-33-AASD-01 12 109614037 109614037 G T ACACB Missense_Mutation p.S469I 0.15 deleterious(0.01) benign(0.281) TCGA-33-AASD-01 12 113532666 113532666 C T DTX1 Missense_Mutation p.R434W 0.10 deleterious(0) probably_damaging(0.978) TCGA-33-AASD-01 12 115121091 115121091 A T TBX3 5'UTR 0.17 TCGA-33-AASD-01 12 117486950 117486950 C A TESC Nonsense_Mutation p.G75* 0.14 TCGA-33-AASD-01 12 120125994 120125994 T C CIT 3'UTR 0.58 TCGA-33-AASD-01 12 18524166 18524166 G T PIK3C2G Missense_Mutation p.V560L 0.20 tolerated(0.38) benign(0.021) TCGA-33-AASD-01 12 2786938 2786938 C A CACNA1C Silent p.R1714R 0.20 TCGA-33-AASD-01 12 29469853 29469853 C T FAR2 Silent p.N345N 0.34 TCGA-33-AASD-01 12 34179296 34179296 C G ALG10 Missense_Mutation p.Q290E 0.33 deleterious(0) probably_damaging(0.996) TCGA-33-AASD-01 12 43826230 43826230 A T ADAMTS20 Silent p.S991S 0.17 TCGA-33-AASD-01 12 49444831 49444831 C A KMT2D Nonsense_Mutation p.E879* 0.44 TCGA-33-AASD-01 12 52345582 52345582 G A ACVR1B Missense_Mutation p.A19T 0.50 tolerated(0.48) benign(0) TCGA-33-AASD-01 12 55688706 55688706 A G OR6C6 Missense_Mutation p.L104S 0.52 tolerated_low_confidence(0.05) benign(0.049) TCGA-33-AASD-01 12 57389334 57389334 C T GPR182 Missense_Mutation p.T114M 0.22 tolerated(0.65) benign(0.061) TCGA-33-AASD-01 12 57968937 57968937 C T KIF5A Missense_Mutation p.S596L 0.50 deleterious(0) possibly_damaging(0.896) TCGA-33-AASD-01 12 6857985 6857985 T A MLF2 Silent p.R241R 0.42 TCGA-33-AASD-01 12 7060648 7060648 G T PTPN6 5'UTR 0.22 TCGA-33-AASD-01 12 71139849 71139849 T A PTPRR Missense_Mutation p.K252N 0.56 tolerated(0.06) probably_damaging(0.999) TCGA-33-AASD-01 12 73046148 73046148 C A TRHDE Missense_Mutation p.L863I 0.61 tolerated(0.25) probably_damaging(0.932) TCGA-33-AASD-01 12 78225287 78225287 G A NAV3 Missense_Mutation p.G16R 0.25 tolerated_low_confidence(0.21) probably_damaging(1) TCGA-33-AASD-01 12 78582045 78582045 A G NAV3 Silent p.A1914A 0.13 TCGA-33-AASD-01 12 7947536 7947536 C G NANOG Missense_Mutation p.Q255E 0.42 deleterious(0.01) possibly_damaging(0.493) TCGA-33-AASD-01 12 88480195 88480195 T A CEP290 Missense_Mutation p.Q1425H 0.24 benign(0.052) TCGA-33-AASD-01 12 96356138 96356138 G T AMDHD1 Silent p.G273G 0.15 TCGA-33-AASD-01 12 9747935 9747935 C T KLRB1 Missense_Mutation p.E205K 0.30 tolerated(0.08) benign(0.343) TCGA-33-AASD-01 12 99019934 99019934 T C IKBIP Missense_Mutation p.Q303R 0.58 deleterious(0.01) benign(0.392) TCGA-33-AASD-01 13 40261638 40261638 A T COG6 Splice_Site p.X263_splice 0.67 TCGA-33-AASD-01 13 88328406 88328406 T A SLITRK5 Missense_Mutation p.Y255N 0.69 deleterious(0) probably_damaging(0.969) TCGA-33-AASD-01 14 20248626 20248626 A G OR4M1 Missense_Mutation p.I49V 0.21 tolerated(1) benign(0.007) TCGA-33-AASD-01 14 20389173 20389173 G T OR4K5 Missense_Mutation p.M136I 0.23 deleterious(0.05) possibly_damaging(0.722) TCGA-33-AASD-01 14 24545748 24545748 G A CPNE6 Missense_Mutation p.E383K 0.77 tolerated(0.17) benign(0.145) TCGA-33-AASD-01 14 45432329 45432329 A T FAM179B Silent p.A235A 0.75 TCGA-33-AASD-01 14 70712659 70712659 A T ADAM21P1 RNA 0.52 TCGA-33-AASD-01 14 74411377 74411377 C T FAM161B Missense_Mutation p.E259K 0.21 deleterious(0) possibly_damaging(0.882) TCGA-33-AASD-01 14 74823913 74823913 C T VRTN Missense_Mutation p.P143S 0.32 tolerated(0.08) probably_damaging(0.998) TCGA-33-AASD-01 14 95030111 95030111 C T SERPINA4 Missense_Mutation p.R98C 0.16 deleterious(0.01) possibly_damaging(0.867) TCGA-33-AASD-01 15 20658715 20658715 G T HERC2P3 RNA 0.50 TCGA-33-AASD-01 15 23811515 23811515 G A MKRN3 Missense_Mutation p.G196S 0.21 deleterious(0.03) benign(0.284) TCGA-33-AASD-01 15 24921920 24921920 G T NPAP1 Missense_Mutation p.M302I 0.23 tolerated(0.34) benign(0.146) TCGA-33-AASD-01 15 25342881 25342881 C A SNORD116-25 RNA 0.37 TCGA-33-AASD-01 15 27184469 27184469 G T GABRA5 Intron 0.34 TCGA-33-AASD-01 15 28090176 28090176 C A OCA2 Silent p.A787A 0.63 TCGA-33-AASD-01 15 50534321 50534321 G A HDC 3'UTR 0.44 TCGA-33-AASD-01 15 51669660 51669660 G A GLDN Silent p.V126V 0.63 TCGA-33-AASD-01 15 55783321 55783321 C A DYX1C1 Missense_Mutation p.K135N 0.69 deleterious(0.01) possibly_damaging(0.493) TCGA-33-AASD-01 15 65411101 65411101 G A PDCD7 Missense_Mutation p.P471L 0.67 tolerated(0.31) benign(0.011) TCGA-33-AASD-01 16 11370222 11370222 G T PRM2 Silent p.V2V 0.31 TCGA-33-AASD-01 16 1270946 1270946 C T CACNA1H Silent p.S2338S 0.48 TCGA-33-AASD-01 16 1552137 1552137 G T TELO2 Splice_Site p.X521_splice 0.44 TCGA-33-AASD-01 16 19125907 19125907 G T ITPRIPL2 Missense_Mutation p.D42Y 0.40 deleterious(0.01) probably_damaging(0.995) TCGA-33-AASD-01 16 2369671 2369671 G A ABCA3 Nonsense_Mutation p.Q262* 0.46 TCGA-33-AASD-01 16 23722310 23722310 C A ERN2 Silent p.L89L 0.22 TCGA-33-AASD-01 16 23722311 23722311 A G ERN2 Missense_Mutation p.L89P 0.22 deleterious(0.03) probably_damaging(0.918) TCGA-33-AASD-01 16 24583323 24583323 A G RBBP6 Missense_Mutation p.S1646G 0.26 deleterious_low_confidence(0) benign(0.184) TCGA-33-AASD-01 16 49407945 49407945 C G C16orf78 Missense_Mutation p.T32S 0.11 deleterious(0.01) probably_damaging(0.986) TCGA-33-AASD-01 16 67909966 67909966 G T EDC4 Silent p.R67R 0.58 TCGA-33-AASD-01 16 76311618 76311618 G T CNTNAP4 Missense_Mutation p.W19L 0.44 tolerated(0.13) benign(0.011) TCGA-33-AASD-01 16 76311619 76311619 G T CNTNAP4 Missense_Mutation p.W19C 0.44 deleterious(0) possibly_damaging(0.879) TCGA-33-AASD-01 16 84163608 84163608 C A HSDL1 Missense_Mutation p.A217S 0.54 deleterious(0.04) possibly_damaging(0.686) TCGA-33-AASD-01 16 84900554 84900554 C T CRISPLD2 Missense_Mutation p.T254M 0.19 tolerated(0.12) benign(0.018) TCGA-33-AASD-01 17 10222282 10222282 T A MYH13 Missense_Mutation p.Q1188L 0.06 deleterious(0.01) benign(0.305) TCGA-33-AASD-01 17 10257996 10257996 C T MYH13 Splice_Site p.X335_splice 0.90 TCGA-33-AASD-01 17 10263376 10263376 C T MYH13 Silent p.G182G 0.86 TCGA-33-AASD-01 17 10300217 10300217 T A MYH8 Missense_Mutation p.Q1422L 0.84 tolerated(0.2) benign(0.12) TCGA-33-AASD-01 17 10400506 10400506 C A MYH1 Missense_Mutation p.E1512D 0.82 deleterious(0.01) probably_damaging(0.963) TCGA-33-AASD-01 17 10406496 10406496 C A MYH1 Missense_Mutation p.A921S 0.65 tolerated(0.11) benign(0.007) TCGA-33-AASD-01 17 10408569 10408569 A T MYH1 Missense_Mutation p.D782E 0.77 deleterious(0) probably_damaging(0.996) TCGA-33-AASD-01 17 11568174 11568174 G C DNAH9 Missense_Mutation p.D874H 0.79 possibly_damaging(0.491) TCGA-33-AASD-01 17 2995639 2995639 A T OR1D2 Missense_Mutation p.Y218N 0.84 deleterious(0) probably_damaging(0.988) TCGA-33-AASD-01 17 37099869 37099869 A T FBXO47 Missense_Mutation p.V305D 0.67 deleterious(0) possibly_damaging(0.836) TCGA-33-AASD-01 17 37425115 37425115 C - FBXL20 Frame_Shift_Del p.E300Nfs*13 0.44 TCGA-33-AASD-01 17 40965979 40965979 G C BECN1 Missense_Mutation p.T343R 0.57 tolerated(0.34) possibly_damaging(0.702) TCGA-33-AASD-01 17 66416340 66416340 G A ARSG Silent p.R438R 0.34 TCGA-33-AASD-01 17 7579312 7579312 C A TP53 Silent p.T125T 0.90 TCGA-33-AASD-01 17 80280165 80280165 C T SECTM1 Missense_Mutation p.A207T 0.61 deleterious_low_confidence(0.01) benign(0.007) TCGA-33-AASD-01 18 19379923 19379923 A T MIB1 Missense_Mutation p.R453S 0.26 tolerated(0.44) benign(0.096) TCGA-33-AASD-01 18 61151824 61151824 G T SERPINB5 Nonsense_Mutation p.G55* 0.33 TCGA-33-AASD-01 18 61151825 61151825 G T SERPINB5 Missense_Mutation p.G55V 0.35 tolerated(0.05) benign(0.046) TCGA-33-AASD-01 19 10079095 10079095 C A COL5A3 Missense_Mutation p.G1427V 0.62 unknown(0) TCGA-33-AASD-01 19 10602763 10602763 C A KEAP1 Missense_Mutation p.R272L 0.53 deleterious(0) benign(0.088) TCGA-33-AASD-01 19 10908120 10908120 A G DNM2 Missense_Mutation p.K421E 0.70 tolerated(0.4) probably_damaging(0.964) TCGA-33-AASD-01 19 13050404 13050404 A G CALR Missense_Mutation p.Q119R 0.67 deleterious(0) probably_damaging(0.957) TCGA-33-AASD-01 19 14499574 14499574 A G CD97 Missense_Mutation p.N45S 0.66 tolerated(0.81) benign(0) TCGA-33-AASD-01 19 24309202 24309202 G T ZNF254 Missense_Mutation p.V134L 0.15 tolerated(0.15) benign(0.049) TCGA-33-AASD-01 19 36014322 36014322 G A SBSN 3'UTR 0.47 TCGA-33-AASD-01 19 36258757 36258757 G T C19orf55 Missense_Mutation p.R337L 0.42 tolerated(0.66) benign(0.042) TCGA-33-AASD-01 19 37118112 37118112 G T ZNF382 Missense_Mutation p.C438F 0.34 deleterious(0) probably_damaging(1) TCGA-33-AASD-01 19 37676906 37676906 T A ZNF585B Silent p.T511T 0.04 TCGA-33-AASD-01 19 39372127 39372127 C A SIRT2 Missense_Mutation p.K212N 0.47 deleterious(0) probably_damaging(0.978) TCGA-33-AASD-01 19 41248476 41248476 C G C19orf54 Silent p.R306R 0.59 TCGA-33-AASD-01 19 42583436 42583436 G T ZNF574 Silent p.P226P 0.34 TCGA-33-AASD-01 19 45888959 45888959 G A PPP1R13L Silent p.C703C 0.42 TCGA-33-AASD-01 19 47127117 47127117 G C PTGIR Missense_Mutation p.S122R 0.30 deleterious(0.02) probably_damaging(0.969) TCGA-33-AASD-01 19 49619590 49619590 A G LIN7B Missense_Mutation p.D100G 0.23 tolerated(0.11) benign(0.038) TCGA-33-AASD-01 19 51994834 51994834 C T SIGLEC12 3'UTR 0.50 TCGA-33-AASD-01 19 52002825 52002825 G T SIGLEC12 Missense_Mutation p.D318E 0.34 tolerated(0.34) benign(0.013) TCGA-33-AASD-01 19 52091664 52091664 A G ZNF175 Missense_Mutation p.T694A 0.28 deleterious(0) possibly_damaging(0.737) TCGA-33-AASD-01 19 52148771 52148771 T A SIGLEC14 Missense_Mutation p.N238I 0.87 deleterious(0.01) benign(0.439) TCGA-33-AASD-01 19 52618029 52618029 T C ZNF616 3'UTR 0.42 TCGA-33-AASD-01 19 53793249 53793249 C A BIRC8 Missense_Mutation p.D127Y 0.33 deleterious(0.05) benign(0.434) TCGA-33-AASD-01 19 54327193 54327193 C A NLRP12 Missense_Mutation p.R79L 0.40 tolerated(0.1) benign(0.093) TCGA-33-AASD-01 19 55708100 55708100 T A PTPRH Missense_Mutation p.N683Y 0.51 benign(0.011) TCGA-33-AASD-01 19 5751795 5751795 G C CATSPERD Silent p.A375A 0.63 TCGA-33-AASD-01 1 109394523 109394523 T C AKNAD1 Missense_Mutation p.H255R 0.52 deleterious(0.04) probably_damaging(0.949) TCGA-33-AASD-01 1 111216058 111216058 C T KCNA3 Silent p.K458K 0.59 TCGA-33-AASD-01 1 11561903 11561903 C A PTCHD2 Missense_Mutation p.A285E 0.32 tolerated(0.28) possibly_damaging(0.591) TCGA-33-AASD-01 1 116380634 116380634 G A NHLH2 Silent p.R120R 0.50 TCGA-33-AASD-01 1 117127578 117127578 A T IGSF3 Missense_Mutation p.I866K 0.35 tolerated(0.67) benign(0) TCGA-33-AASD-01 1 120468412 120468412 G A NOTCH2 Nonsense_Mutation p.Q1343* 0.29 TCGA-33-AASD-01 1 1223058 1223058 G A SCNN1D Missense_Mutation p.G469S 0.19 tolerated(1) benign(0.008) TCGA-33-AASD-01 1 152280119 152280119 G A FLG Missense_Mutation p.L2415F 0.37 probably_damaging(0.92) TCGA-33-AASD-01 1 153234284 153234284 G A LOR Missense_Mutation p.G287S 0.40 unknown(0) TCGA-33-AASD-01 1 153276342 153276342 G C PGLYRP3 Missense_Mutation p.P174A 0.37 tolerated(0.13) benign(0.081) TCGA-33-AASD-01 1 157504416 157504416 G T FCRL5 Missense_Mutation p.L557I 0.24 deleterious(0.03) possibly_damaging(0.836) TCGA-33-AASD-01 1 157773766 157773766 G T FCRL1 Missense_Mutation p.P63Q 0.31 tolerated(0.5) benign(0.159) TCGA-33-AASD-01 1 158589100 158589100 C A SPTA1 Nonsense_Mutation p.E2148* 0.38 TCGA-33-AASD-01 1 158648312 158648312 C A SPTA1 Missense_Mutation p.D231Y 0.35 deleterious(0.03) possibly_damaging(0.507) TCGA-33-AASD-01 1 158687725 158687725 T A OR6K3 Missense_Mutation p.N61Y 0.42 tolerated(1) benign(0.013) TCGA-33-AASD-01 1 161495097 161495097 G A HSPA6 Missense_Mutation p.G217S 0.29 deleterious_low_confidence(0.01) probably_damaging(0.954) TCGA-33-AASD-01 1 161683149 161683149 C A FCRLA Silent p.T376T 0.41 TCGA-33-AASD-01 1 1686813 1686813 C T NADK Missense_Mutation p.G375R 0.25 deleterious(0) possibly_damaging(0.652) TCGA-33-AASD-01 1 169526007 169526007 C G F5 Missense_Mutation p.E277Q 0.30 tolerated(0.1) probably_damaging(0.999) TCGA-33-AASD-01 1 173454637 173454637 A G PRDX6 Silent p.T130T 0.40 TCGA-33-AASD-01 1 173839698 173839698 A T ZBTB37 Missense_Mutation p.Q112L 0.31 deleterious(0.02) probably_damaging(0.927) TCGA-33-AASD-01 1 175067678 175067678 G T TNN Missense_Mutation p.W689L 0.21 tolerated(0.05) probably_damaging(0.984) TCGA-33-AASD-01 1 175067679 175067679 G C TNN Missense_Mutation p.W689C 0.21 deleterious(0) probably_damaging(0.925) TCGA-33-AASD-01 1 175086202 175086202 G T TNN Missense_Mutation p.E749D 0.32 tolerated(1) benign(0.009) TCGA-33-AASD-01 1 175335107 175335107 G T TNR Missense_Mutation p.L741I 0.38 tolerated(0.05) probably_damaging(0.983) TCGA-33-AASD-01 1 175355352 175355352 G T TNR Silent p.V531V 0.26 TCGA-33-AASD-01 1 17942657 17942657 G T ARHGEF10L Silent p.V265V 0.46 TCGA-33-AASD-01 1 185089360 185089360 C A TRMT1L Missense_Mutation p.V665L 0.40 deleterious(0.01) possibly_damaging(0.9) TCGA-33-AASD-01 1 18808813 18808813 C A KLHDC7A Missense_Mutation p.N446K 0.38 tolerated(1) benign(0.001) TCGA-33-AASD-01 1 197111502 197111502 C G ASPM Missense_Mutation p.R627P 0.32 tolerated(0.17) possibly_damaging(0.503) TCGA-33-AASD-01 1 200842891 200842891 G T GPR25 Silent p.S242S 0.35 TCGA-33-AASD-01 1 203134998 203134998 G T ADORA1 Missense_Mutation p.E317D 0.60 tolerated(0.39) benign(0) TCGA-33-AASD-01 1 210016864 210016864 A G DIEXF Missense_Mutation p.Y617C 0.40 deleterious(0) probably_damaging(0.996) TCGA-33-AASD-01 1 231339635 231339635 G C TRIM67 Missense_Mutation p.Q519H 0.42 tolerated(0.1) probably_damaging(0.996) TCGA-33-AASD-01 1 236920863 236920863 G T ACTN2 Silent p.T744T 0.27 TCGA-33-AASD-01 1 240371520 240371520 C A FMN2 Silent p.P1136P 0.36 TCGA-33-AASD-01 1 240979658 240979658 G T RGS7 Missense_Mutation p.P248T 0.29 tolerated(0.14) probably_damaging(0.997) TCGA-33-AASD-01 1 241031970 241031970 T C RGS7 Splice_Site p.X176_splice 0.33 TCGA-33-AASD-01 1 248551099 248551099 A T OR2T6 Missense_Mutation p.S64C 0.22 deleterious(0.02) benign(0.12) TCGA-33-AASD-01 1 248814115 248814115 G T OR2T27 Missense_Mutation p.P24H 0.17 tolerated(0.67) possibly_damaging(0.687) TCGA-33-AASD-01 1 2537761 2537761 G T MMEL1 Missense_Mutation p.Q226K 0.35 tolerated(1) benign(0.014) TCGA-33-AASD-01 1 33360337 33360337 G C TMEM54 3'UTR 0.16 TCGA-33-AASD-01 1 34164507 34164507 G C CSMD2 Silent p.P1217P 0.17 TCGA-33-AASD-01 1 39916871 39916871 G - MACF1 Frame_Shift_Del p.D4744Mfs*20 0.23 TCGA-33-AASD-01 1 40430973 40430973 G T MFSD2A Silent p.L161L 0.40 TCGA-33-AASD-01 1 40432351 40432351 C A MFSD2A Silent p.R278R 0.47 TCGA-33-AASD-01 1 43316836 43316836 G T ZNF691 Silent p.G100G 0.50 TCGA-33-AASD-01 1 45243706 45243706 G A RPS8 Missense_Mutation p.R141Q 0.19 tolerated(0.26) benign(0.067) TCGA-33-AASD-01 1 52747475 52747475 G T ZFYVE9 Silent p.R1004R 0.17 TCGA-33-AASD-01 1 55534776 55534776 G A USP24 Missense_Mutation p.S2602L 0.52 deleterious_low_confidence(0) probably_damaging(0.921) TCGA-33-AASD-01 1 74701112 74701112 G C TNNI3K Intron 0.44 TCGA-33-AASD-01 1 75038316 75038316 C T C1orf173 Silent p.K1026K 0.16 TCGA-33-AASD-01 1 78478923 78478923 G T DNAJB4 Missense_Mutation p.A134S 0.37 tolerated(0.75) benign(0.001) TCGA-33-AASD-01 20 2413272 2413272 G A TGM6 Missense_Mutation p.V702M 0.43 deleterious(0.02) probably_damaging(1) TCGA-33-AASD-01 20 30822407 30822407 G T POFUT1 Silent p.G370G 0.37 TCGA-33-AASD-01 20 33364252 33364252 C T NCOA6 Splice_Site p.X79_splice 0.31 TCGA-33-AASD-01 20 43629927 43629927 G T STK4 Silent p.T360T 0.36 TCGA-33-AASD-01 20 51871735 51871735 C A TSHZ2 Missense_Mutation p.P580T 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-33-AASD-01 20 55758923 55758923 C G BMP7 Missense_Mutation p.Q271H 0.35 tolerated(0.1) benign(0.06) TCGA-33-AASD-01 20 5924326 5924326 G A TRMT6 Silent p.H182H 0.27 TCGA-33-AASD-01 20 61460819 61460819 C A COL9A3 Silent p.R341R 0.29 TCGA-33-AASD-01 20 61511775 61511775 G A DIDO1 Missense_Mutation p.R1845C 0.32 benign(0.07) TCGA-33-AASD-01 20 61941171 61941171 C A COL20A1 Silent p.T389T 0.58 TCGA-33-AASD-01 21 10906948 10906948 C A TPTE Missense_Mutation p.G538V 0.14 tolerated(0.13) benign(0.038) TCGA-33-AASD-01 21 22658605 22658605 A T NCAM2 Missense_Mutation p.R118S 0.19 deleterious(0.02) benign(0.087) TCGA-33-AASD-01 21 30949459 30949459 C - GRIK1 Frame_Shift_Del p.G652Efs*9 0.18 TCGA-33-AASD-01 21 35893789 35893789 C T RCAN1 Intron 0.48 TCGA-33-AASD-01 21 41385239 41385239 C A DSCAM Missense_Mutation p.D1921Y 0.32 deleterious_low_confidence(0.02) possibly_damaging(0.492) TCGA-33-AASD-01 21 47817368 47817368 C A PCNT Missense_Mutation p.S1469Y 0.50 possibly_damaging(0.831) TCGA-33-AASD-01 22 22843763 22843763 C A ZNF280B 5'UTR 0.41 TCGA-33-AASD-01 22 31663885 31663885 C T LIMK2 Missense_Mutation p.R397C 0.24 deleterious(0.01) possibly_damaging(0.892) TCGA-33-AASD-01 22 32462975 32462975 G T SLC5A1 Silent p.L87L 0.44 TCGA-33-AASD-01 22 39222563 39222563 T A NPTXR Missense_Mutation p.N347I 0.40 deleterious(0) probably_damaging(1) TCGA-33-AASD-01 22 50216949 50216949 G A BRD1 Silent p.I339I 0.09 TCGA-33-AASD-01 2 107002828 107002828 G T PLGLA RNA 0.39 TCGA-33-AASD-01 2 111408231 111408231 T A BUB1 Nonsense_Mutation p.R699* 0.41 TCGA-33-AASD-01 2 119750741 119750741 C A MARCO Silent p.R432R 0.41 TCGA-33-AASD-01 2 125530507 125530507 C T CNTNAP5 Silent p.L888L 0.32 TCGA-33-AASD-01 2 130831983 130831983 G A POTEF Missense_Mutation p.A1021V 0.24 deleterious_low_confidence(0.02) probably_damaging(0.961) TCGA-33-AASD-01 2 130911352 130911352 C T SMPD4 Missense_Mutation p.E645K 0.33 deleterious(0.01) benign(0.024) TCGA-33-AASD-01 2 132021361 132021361 A T POTEE Missense_Mutation p.N778I 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-33-AASD-01 2 135308178 135308178 T A TMEM163 Missense_Mutation p.N141Y 0.37 deleterious(0) probably_damaging(0.991) TCGA-33-AASD-01 2 135621154 135621154 G A ACMSD Missense_Mutation p.V147I 0.30 tolerated(0.87) benign(0.005) TCGA-33-AASD-01 2 135740766 135740766 C - MAP3K19 Intron 0.30 TCGA-33-AASD-01 2 138030186 138030186 T C THSD7B Missense_Mutation p.Y784H 0.28 tolerated(0.05) possibly_damaging(0.607) TCGA-33-AASD-01 2 141274581 141274581 C G LRP1B Splice_Site p.X2676_splice 0.35 TCGA-33-AASD-01 2 144525744 144525744 G T ARHGAP15 3'UTR 0.42 TCGA-33-AASD-01 2 152311671 152311671 A G RIF1 Silent p.S869S 0.39 TCGA-33-AASD-01 2 152359886 152359886 G T NEB Missense_Mutation p.R7938S 0.36 probably_damaging(0.984) TCGA-33-AASD-01 2 152359887 152359887 T A NEB Missense_Mutation p.K7937N 0.37 possibly_damaging(0.857) TCGA-33-AASD-01 2 163133924 163133924 C A IFIH1 Splice_Site p.X682_splice 0.48 TCGA-33-AASD-01 2 163133925 163133925 C A IFIH1 Nonsense_Mutation p.E682* 0.48 TCGA-33-AASD-01 2 163279912 163279912 C G KCNH7 Silent p.L696L 0.39 TCGA-33-AASD-01 2 165972074 165972074 T C SCN3A Silent p.A1135A 0.47 TCGA-33-AASD-01 2 166848459 166848459 C A SCN1A Missense_Mutation p.V1776F 0.37 deleterious(0.02) probably_damaging(0.953) TCGA-33-AASD-01 2 166896087 166896087 G T SCN1A Missense_Mutation p.T812K 0.45 deleterious(0) possibly_damaging(0.457) TCGA-33-AASD-01 2 166915087 166915087 C T SCN1A Missense_Mutation p.V126I 0.30 tolerated(0.33) benign(0.001) TCGA-33-AASD-01 2 170096260 170096260 A G LRP2 Silent p.N1357N 0.33 TCGA-33-AASD-01 2 170103403 170103403 G T LRP2 Missense_Mutation p.P1001H 0.51 probably_damaging(0.996) TCGA-33-AASD-01 2 174231090 174231090 G T CDCA7 Missense_Mutation p.R372L 0.41 deleterious(0) possibly_damaging(0.468) TCGA-33-AASD-01 2 174231091 174231091 A T CDCA7 Silent p.R372R 0.41 TCGA-33-AASD-01 2 179430146 179430146 C T TTN Missense_Mutation p.G26905S 0.35 TCGA-33-AASD-01 2 179442148 179442148 G T TTN Missense_Mutation p.L22972I 0.37 TCGA-33-AASD-01 2 179544324 179544324 A T TTN Splice_Site p.X11222_splice 0.40 TCGA-33-AASD-01 2 179597719 179597719 T A TTN Missense_Mutation p.K5395I 0.38 TCGA-33-AASD-01 2 21249702 21249702 T A APOB Missense_Mutation p.L734F 0.45 probably_damaging(0.999) TCGA-33-AASD-01 2 218926 218926 T C SH3YL1 Missense_Mutation p.Q305R 0.39 tolerated(0.17) benign(0.003) TCGA-33-AASD-01 2 219563480 219563480 G T STK36 Silent p.L1071L 0.41 TCGA-33-AASD-01 2 223574617 223574617 A T MOGAT1 3'UTR 0.35 TCGA-33-AASD-01 2 224462424 224462424 C A SCG2 Missense_Mutation p.R526L 0.40 deleterious(0) probably_damaging(1) TCGA-33-AASD-01 2 228890225 228890225 G - SPHKAP Frame_Shift_Del p.P109Qfs*10 0.27 TCGA-33-AASD-01 2 232324884 232324884 T C NCL Missense_Mutation p.D340G 0.37 possibly_damaging(0.842) TCGA-33-AASD-01 2 236957813 236957813 G T AGAP1 Missense_Mutation p.D668Y 0.38 deleterious(0) probably_damaging(1) TCGA-33-AASD-01 2 242135136 242135136 G C ANO7 Missense_Mutation p.W116S 0.45 deleterious(0) probably_damaging(0.969) TCGA-33-AASD-01 2 24246005 24246005 G A MFSD2B Missense_Mutation p.M355I 0.45 tolerated(0.39) benign(0.1) TCGA-33-AASD-01 2 242757655 242757655 G T NEU4 Missense_Mutation p.G259C 0.62 deleterious(0.01) probably_damaging(1) TCGA-33-AASD-01 2 25050932 25050932 C G ADCY3 Silent p.V757V 0.37 TCGA-33-AASD-01 2 26654772 26654772 C A DRC1 Silent p.R262R 0.29 TCGA-33-AASD-01 2 26676223 26676223 G T DRC1 Silent p.A575A 0.27 TCGA-33-AASD-01 2 27424869 27424869 C A SLC5A6 Missense_Mutation p.C450F 0.38 tolerated(1) benign(0.049) TCGA-33-AASD-01 2 27479339 27479339 C A SLC30A3 Silent p.S311S 0.50 TCGA-33-AASD-01 2 29754876 29754876 C A ALK Missense_Mutation p.R353S 0.25 tolerated(0.56) benign(0.13) TCGA-33-AASD-01 2 29754894 29754894 C A ALK Silent p.L347L 0.28 TCGA-33-AASD-01 2 61236001 61236001 A T PUS10 Silent p.S92S 0.27 TCGA-33-AASD-01 2 71742790 71742790 G T DYSF Missense_Mutation p.G266V 0.31 deleterious(0) probably_damaging(1) TCGA-33-AASD-01 2 88396211 88396211 C A SMYD1 Missense_Mutation p.L266M 0.36 deleterious(0) probably_damaging(0.953) TCGA-33-AASD-01 2 89399466 89399466 C A IGKV1-16 Silent p.G79G 0.36 TCGA-33-AASD-01 2 9419462 9419462 G T ASAP2 Missense_Mutation p.R48L 0.30 deleterious(0.02) possibly_damaging(0.491) TCGA-33-AASD-01 2 95542398 95542398 A G TEKT4 Missense_Mutation p.M398V 0.50 tolerated(0.07) benign(0.259) TCGA-33-AASD-01 3 100352112 100352112 G A GPR128 Missense_Mutation p.G113D 0.20 tolerated(0.09) benign(0.197) TCGA-33-AASD-01 3 100994520 100994520 C A IMPG2 Missense_Mutation p.R218M 0.55 tolerated(0.14) possibly_damaging(0.45) TCGA-33-AASD-01 3 112066677 112066677 G - CD200 Frame_Shift_Del 0.24 TCGA-33-AASD-01 3 112991309 112991309 C T BOC Silent p.I240I 0.29 TCGA-33-AASD-01 3 118649019 118649019 G C IGSF11 Silent p.L52L 0.48 TCGA-33-AASD-01 3 122284808 122284808 C T DTX3L Missense_Mutation p.T97M 0.26 tolerated(0.16) benign(0.003) TCGA-33-AASD-01 3 134251693 134251693 A T CEP63 Missense_Mutation p.N131I 0.25 deleterious(0.05) benign(0.189) TCGA-33-AASD-01 3 135871408 135871408 T C MSL2 Silent p.K105K 0.11 TCGA-33-AASD-01 3 140785087 140785087 G T SPSB4 Silent p.G47G 0.30 TCGA-33-AASD-01 3 151101898 151101898 G C MED12L Missense_Mutation p.M1571I 0.21 deleterious(0) probably_damaging(0.942) TCGA-33-AASD-01 3 155206455 155206455 C A PLCH1 Missense_Mutation p.V833L 0.22 tolerated(0.08) benign(0.033) TCGA-33-AASD-01 3 159605550 159605550 A G IQCJ-SCHIP1 Silent p.E426E 0.30 TCGA-33-AASD-01 3 164783135 164783135 T G SI Missense_Mutation p.I241L 0.59 tolerated(1) benign(0.01) TCGA-33-AASD-01 3 164906480 164906480 T A SLITRK3 Silent p.G713G 0.23 TCGA-33-AASD-01 3 167068294 167068294 C A ZBBX Nonsense_Mutation p.E148* 0.31 TCGA-33-AASD-01 3 169646324 169646324 C A SAMD7 Missense_Mutation p.H333Q 0.29 deleterious(0.01) possibly_damaging(0.677) TCGA-33-AASD-01 3 179076738 179076738 G T MFN1 Missense_Mutation p.G120V 0.21 deleterious(0.01) possibly_damaging(0.899) TCGA-33-AASD-01 3 179426700 179426700 T C USP13 Missense_Mutation p.Y254H 0.33 deleterious(0.04) benign(0.076) TCGA-33-AASD-01 3 184297351 184297351 G T EPHB3 Missense_Mutation p.V630L 0.24 tolerated(0.18) benign(0.023) TCGA-33-AASD-01 3 185906160 185906160 C A DGKG Silent p.G642G 0.23 TCGA-33-AASD-01 3 193353224 193353224 C T OPA1 Silent p.I269I 0.27 TCGA-33-AASD-01 3 32030555 32030555 T C ZNF860 5'UTR 0.62 TCGA-33-AASD-01 3 38627217 38627217 C A SCN5A Missense_Mutation p.V918F 0.75 tolerated(0.11) probably_damaging(0.979) TCGA-33-AASD-01 3 38888685 38888685 A G SCN11A Missense_Mutation p.F1626L 0.65 deleterious(0) probably_damaging(0.997) TCGA-33-AASD-01 3 51431353 51431353 G - RBM15B Frame_Shift_Del p.S844Pfs*27 0.45 TCGA-33-AASD-01 3 58517461 58517461 A G ACOX2 Missense_Mutation p.I221T 0.64 deleterious(0) possibly_damaging(0.694) TCGA-33-AASD-01 3 81698972 81698972 T C GBE1 Missense_Mutation p.H177R 0.68 deleterious(0) benign(0.333) TCGA-33-AASD-01 3 99513683 99513683 C A COL8A1 Missense_Mutation p.P313H 0.42 deleterious(0.01) unknown(0) TCGA-33-AASD-01 4 104037829 104037829 T A CENPE Silent p.G2449G 0.27 TCGA-33-AASD-01 4 106600976 106600976 A G ARHGEF38 3'UTR 0.32 TCGA-33-AASD-01 4 110685694 110685694 G A CFI Nonsense_Mutation p.Q161* 0.35 TCGA-33-AASD-01 4 114277959 114277959 G C ANK2 Missense_Mutation p.E2729Q 0.47 possibly_damaging(0.625) TCGA-33-AASD-01 4 119473445 119473445 G A CEP170P1 Intron 0.36 TCGA-33-AASD-01 4 119473446 119473446 G C CEP170P1 Splice_Site 0.38 TCGA-33-AASD-01 4 122593731 122593731 A G ANXA5 Silent p.F194F 0.36 TCGA-33-AASD-01 4 122853624 122853624 G T TRPC3 Missense_Mutation p.H263Q 0.39 deleterious(0) probably_damaging(1) TCGA-33-AASD-01 4 125593073 125593073 T C ANKRD50 Silent p.Q453Q 0.44 TCGA-33-AASD-01 4 126412425 126412425 G A FAT4 Silent p.E4816E 0.37 TCGA-33-AASD-01 4 134071859 134071859 A T PCDH10 Silent p.P188P 0.33 TCGA-33-AASD-01 4 155487114 155487114 C T FGB Missense_Mutation p.P90L 0.47 deleterious(0) probably_damaging(0.963) TCGA-33-AASD-01 4 155533337 155533337 G T FGG Missense_Mutation p.T47N 0.34 deleterious(0.03) probably_damaging(1) TCGA-33-AASD-01 4 156135236 156135236 G A NPY2R Missense_Mutation p.V49I 0.45 deleterious(0.01) possibly_damaging(0.831) TCGA-33-AASD-01 4 156135713 156135713 C A NPY2R Missense_Mutation p.P208T 0.42 deleterious(0.02) probably_damaging(1) TCGA-33-AASD-01 4 156715035 156715035 G T GUCY1B3 Missense_Mutation p.D175Y 0.29 deleterious(0) probably_damaging(0.957) TCGA-33-AASD-01 4 158043527 158043527 G T GLRB Missense_Mutation p.G92V 0.31 deleterious(0) probably_damaging(0.984) TCGA-33-AASD-01 4 169167611 169167611 C G DDX60 Silent p.L1374L 0.31 TCGA-33-AASD-01 4 183601796 183601796 C A TENM3 Silent p.T580T 0.33 TCGA-33-AASD-01 4 185941492 185941492 G T HELT Missense_Mutation p.V184L 0.46 deleterious(0.04) probably_damaging(0.999) TCGA-33-AASD-01 4 366903 366903 C A ZNF141 Missense_Mutation p.P226H 0.28 tolerated(0.06) probably_damaging(0.989) TCGA-33-AASD-01 4 49005757 49005757 G C CWH43 Missense_Mutation p.A270P 0.63 deleterious(0.01) possibly_damaging(0.724) TCGA-33-AASD-01 4 55138639 55138639 G T PDGFRA Missense_Mutation p.G439V 0.62 deleterious(0) probably_damaging(1) TCGA-33-AASD-01 4 57209739 57209739 C T AASDH Missense_Mutation p.A922T 0.19 deleterious(0.01) probably_damaging(0.911) TCGA-33-AASD-01 4 68788584 68788584 G A TMPRSS11A Missense_Mutation p.P197L 0.28 tolerated(0.29) benign(0.117) TCGA-33-AASD-01 4 72897783 72897783 G T NPFFR2 Silent p.A55A 0.28 TCGA-33-AASD-01 4 77817058 77817058 C A SOWAHB Missense_Mutation p.D649Y 0.37 deleterious(0) probably_damaging(0.961) TCGA-33-AASD-01 4 77817059 77817059 C A SOWAHB Missense_Mutation p.Q648H 0.37 tolerated(0.06) possibly_damaging(0.522) TCGA-33-AASD-01 4 8582984 8582984 A G GPR78 Missense_Mutation p.N92S 0.58 deleterious(0.03) possibly_damaging(0.705) TCGA-33-AASD-01 5 113831814 113831814 C G KCNN2 Missense_Mutation p.R559G 0.63 tolerated_low_confidence(0.45) unknown(0) TCGA-33-AASD-01 5 1244460 1244460 G T SLC6A18 Missense_Mutation p.G490C 0.36 deleterious(0) probably_damaging(0.996) TCGA-33-AASD-01 5 127595418 127595418 G T FBN2 Missense_Mutation p.P2823H 0.74 deleterious(0) probably_damaging(1) TCGA-33-AASD-01 5 140482163 140482163 G C PCDHB3 Missense_Mutation p.V644L 0.43 deleterious_low_confidence(0) possibly_damaging(0.791) TCGA-33-AASD-01 5 140562292 140562293 - T PCDHB16 Frame_Shift_Ins p.L54Vfs*35 0.31 TCGA-33-AASD-01 5 145719503 145719503 C G POU4F3 Missense_Mutation p.S171R 0.65 tolerated(0.35) benign(0.051) TCGA-33-AASD-01 5 168189541 168189541 T A SLIT3 Intron 0.55 TCGA-33-AASD-01 5 17353964 17353964 G T CTD-2139B15.2 5'Flank 0.53 TCGA-33-AASD-01 5 23522469 23522469 C A PRDM9 Missense_Mutation p.H189N 0.40 tolerated(0.17) benign(0.036) TCGA-33-AASD-01 5 24498625 24498625 T A CDH10 Missense_Mutation p.N466I 0.44 deleterious(0) probably_damaging(0.996) TCGA-33-AASD-01 5 33963869 33963869 T C SLC45A2 Missense_Mutation p.E272G 0.22 tolerated(0.06) benign(0.3) TCGA-33-AASD-01 5 35874588 35874588 G C IL7R Missense_Mutation p.L248F 0.40 deleterious(0) possibly_damaging(0.89) TCGA-33-AASD-01 5 40852710 40852710 G T CARD6 Missense_Mutation p.D426Y 0.38 deleterious(0) benign(0.313) TCGA-33-AASD-01 5 41052608 41052608 C G MROH2B Missense_Mutation p.D397H 0.15 deleterious(0.01) benign(0.402) TCGA-33-AASD-01 5 52157282 52157282 G T ITGA1 Missense_Mutation p.V62L 0.65 tolerated(0.62) benign(0.102) TCGA-33-AASD-01 5 63257522 63257522 C A HTR1A Missense_Mutation p.G9C 0.70 deleterious_low_confidence(0.01) benign(0.376) TCGA-33-AASD-01 5 63257539 63257539 A G HTR1A Missense_Mutation p.V3A 0.67 tolerated_low_confidence(0.66) benign(0.001) TCGA-33-AASD-01 5 72419607 72419607 G A TMEM171 Missense_Mutation p.C136Y 0.58 deleterious(0) probably_damaging(1) TCGA-33-AASD-01 5 72419699 72419699 G T TMEM171 Missense_Mutation p.G167W 0.56 deleterious(0) probably_damaging(1) TCGA-33-AASD-01 5 7873639 7873639 G A MTRR Missense_Mutation p.G122S 0.11 deleterious(0.01) probably_damaging(1) TCGA-33-AASD-01 6 117683846 117683846 A C ROS1 Missense_Mutation p.W1101G 0.72 deleterious(0.05) benign(0.335) TCGA-33-AASD-01 6 121401790 121401790 T C TBC1D32 3'Flank 0.75 TCGA-33-AASD-01 6 121526243 121526243 G T TBC1D32 Missense_Mutation p.Q850K 0.67 deleterious(0.02) probably_damaging(0.99) TCGA-33-AASD-01 6 123892173 123892173 T A TRDN Missense_Mutation p.T43S 0.70 deleterious_low_confidence(0) unknown(0) TCGA-33-AASD-01 6 13273178 13273178 T C TBC1D7 Intron 0.65 TCGA-33-AASD-01 6 136597482 136597482 A T BCLAF1 Missense_Mutation p.F394Y 0.11 tolerated(0.19) benign(0.294) TCGA-33-AASD-01 6 150267789 150267789 G T ULBP2 Missense_Mutation p.A211S 0.76 tolerated(0.39) benign(0.091) TCGA-33-AASD-01 6 150267790 150267790 G T ULBP2 Splice_Site p.X211_splice 0.75 TCGA-33-AASD-01 6 22290478 22290478 A T PRL Silent p.A139A 0.70 TCGA-33-AASD-01 6 30153672 30153672 C T TRIM26 Missense_Mutation p.R534H 0.53 deleterious(0.02) unknown(0) TCGA-33-AASD-01 6 32029247 32029248 GC - TNXB Frame_Shift_Del p.R2473Qfs*63 0.25 TCGA-33-AASD-01 6 36767767 36767767 C G CPNE5 Missense_Mutation p.E88D 0.57 deleterious(0.01) probably_damaging(0.997) TCGA-33-AASD-01 6 40400436 40400436 G T LRFN2 Silent p.I139I 0.61 TCGA-33-AASD-01 6 44081682 44081682 C A MRPL14 Silent p.G112G 0.49 TCGA-33-AASD-01 6 49753981 49753981 A G PGK2 Missense_Mutation p.I307T 0.67 deleterious(0.03) probably_damaging(0.933) TCGA-33-AASD-01 6 51774124 51774124 G C PKHD1 Missense_Mutation p.F2213L 0.59 deleterious(0.02) probably_damaging(0.999) TCGA-33-AASD-01 6 54066979 54066979 C A MLIP Missense_Mutation p.P354H 0.06 deleterious(0) probably_damaging(1) TCGA-33-AASD-01 6 76728485 76728485 C A IMPG1 Missense_Mutation p.D253Y 0.79 deleterious(0) probably_damaging(0.992) TCGA-33-AASD-01 6 90397818 90397818 C T MDN1 Silent p.E3778E 0.24 TCGA-33-AASD-01 7 100192803 100192803 C T FBXO24 Missense_Mutation p.P382L 0.31 deleterious(0.03) possibly_damaging(0.713) TCGA-33-AASD-01 7 104377250 104377250 C A LHFPL3 Missense_Mutation p.L192M 0.29 deleterious(0) probably_damaging(1) TCGA-33-AASD-01 7 114302219 114302219 C A FOXP2 Silent p.R608R 0.33 TCGA-33-AASD-01 7 11486940 11486940 T C THSD7A Missense_Mutation p.D906G 0.19 deleterious(0) probably_damaging(0.994) TCGA-33-AASD-01 7 117180268 117180268 C G CFTR Missense_Mutation p.I328M 0.26 deleterious(0.04) benign(0.205) TCGA-33-AASD-01 7 120629621 120629621 G T CPED1 5'UTR 0.38 TCGA-33-AASD-01 7 120765886 120765886 C A CPED1 Nonsense_Mutation p.C358* 0.34 TCGA-33-AASD-01 7 120782100 120782100 G T CPED1 Missense_Mutation p.G654C 0.39 tolerated(0.07) possibly_damaging(0.813) TCGA-33-AASD-01 7 120782101 120782101 G T CPED1 Missense_Mutation p.G654V 0.39 tolerated(0.16) benign(0.379) TCGA-33-AASD-01 7 122261550 122261550 C A CADPS2 Silent p.L363L 0.38 TCGA-33-AASD-01 7 123599729 123599729 T C SPAM1 Silent p.G412G 0.41 TCGA-33-AASD-01 7 12684214 12684214 T A SCIN Missense_Mutation p.F589I 0.17 deleterious(0) probably_damaging(1) TCGA-33-AASD-01 7 127222568 127222568 C A GCC1 Missense_Mutation p.A610S 0.42 tolerated(0.3) benign(0.01) TCGA-33-AASD-01 7 128630124 128630124 T A TNPO3 Silent p.L463L 0.39 TCGA-33-AASD-01 7 129317480 129317480 G T NRF1 Missense_Mutation p.R116L 0.37 deleterious(0.02) benign(0.021) TCGA-33-AASD-01 7 131128368 131128368 A T MKLN1 Missense_Mutation p.Q434H 0.44 deleterious(0.03) benign(0) TCGA-33-AASD-01 7 131853201 131853201 C A PLXNA4 Missense_Mutation p.R1383L 0.35 deleterious(0) probably_damaging(0.999) TCGA-33-AASD-01 7 135078900 135078900 T A CNOT4 Missense_Mutation p.N466I 0.37 tolerated(0.1) benign(0.023) TCGA-33-AASD-01 7 135307536 135307536 A T NUP205 Missense_Mutation p.M1448L 0.26 tolerated(0.39) benign(0.006) TCGA-33-AASD-01 7 138602970 138602970 C A KIAA1549 Missense_Mutation p.V468L 0.52 tolerated(0.42) benign(0.003) TCGA-33-AASD-01 7 139257890 139257890 G A HIPK2 Missense_Mutation p.A1127V 0.47 deleterious(0.01) probably_damaging(0.994) TCGA-33-AASD-01 7 143175478 143175478 G T TAS2R41 Missense_Mutation p.K171N 0.37 tolerated(0.68) benign(0) TCGA-33-AASD-01 7 143792627 143792627 C T OR2A12 Silent p.L143L 0.40 TCGA-33-AASD-01 7 150648847 150648847 T C KCNH2 Missense_Mutation p.Y545C 0.43 deleterious(0.01) probably_damaging(1) TCGA-33-AASD-01 7 20744406 20744406 C A ABCB5 Silent p.A799A 0.28 TCGA-33-AASD-01 7 27135068 27135068 C A HOXA1 Missense_Mutation p.G155V 0.36 deleterious(0.02) probably_damaging(0.998) TCGA-33-AASD-01 7 27181398 27181398 T A HOXA5 3'UTR 0.33 TCGA-33-AASD-01 7 31829855 31829855 C G PDE1C Intron 0.21 TCGA-33-AASD-01 7 35733947 35733947 C T HERPUD2 5'UTR 0.47 TCGA-33-AASD-01 7 35733951 35733951 A T HERPUD2 5'UTR 0.46 TCGA-33-AASD-01 7 4056941 4056941 G T SDK1 Silent p.L853L 0.26 TCGA-33-AASD-01 7 42063181 42063181 G A GLI3 Silent p.V461V 0.54 TCGA-33-AASD-01 7 44089871 44089871 G T DBNL Missense_Mutation p.G44V 0.22 deleterious(0.01) possibly_damaging(0.803) TCGA-33-AASD-01 7 45650044 45650044 C - ADCY1 Frame_Shift_Del p.P287Lfs*16 0.32 TCGA-33-AASD-01 7 47944122 47944122 C T PKD1L1 Missense_Mutation p.R595Q 0.26 deleterious(0) probably_damaging(0.996) TCGA-33-AASD-01 7 48390237 48390237 C T ABCA13 Intron 0.26 TCGA-33-AASD-01 7 70885994 70885994 G C WBSCR17 Missense_Mutation p.E289Q 0.46 tolerated(0.35) probably_damaging(0.997) TCGA-33-AASD-01 7 77807345 77807345 C A MAGI2 Missense_Mutation p.D796Y 0.23 deleterious(0) probably_damaging(0.994) TCGA-33-AASD-01 7 88966066 88966066 C A ZNF804B Missense_Mutation p.P1257H 0.45 deleterious(0) probably_damaging(1) TCGA-33-AASD-01 7 89856777 89856777 G C STEAP2 Missense_Mutation p.E329Q 0.38 tolerated(0.57) possibly_damaging(0.786) TCGA-33-AASD-01 7 91737892 91737892 A G AKAP9 Silent p.T3877T 0.41 TCGA-33-AASD-01 7 91870401 91870401 C A KRIT1 Silent p.T56T 0.39 TCGA-33-AASD-01 7 99687359 99687359 G A COPS6 Silent p.K108K 0.31 TCGA-33-AASD-01 8 104439423 104439423 A G DCAF13 Missense_Mutation p.I341M 0.43 deleterious(0.03) benign(0.124) TCGA-33-AASD-01 8 105361287 105361287 G T DCSTAMP Missense_Mutation p.Q169H 0.37 tolerated(0.67) benign(0.002) TCGA-33-AASD-01 8 113812427 113812427 T C CSMD3 Missense_Mutation p.S646G 0.37 tolerated(0.1) benign(0.208) TCGA-33-AASD-01 8 121259935 121259935 C A COL14A1 Missense_Mutation p.P855T 0.23 tolerated(0.05) possibly_damaging(0.811) TCGA-33-AASD-01 8 133036903 133036903 C T OC90 Missense_Mutation p.G420E 0.52 tolerated(0.68) probably_damaging(1) TCGA-33-AASD-01 8 133192501 133192501 C A KCNQ3 Missense_Mutation p.R227L 0.50 deleterious(0.01) probably_damaging(0.986) TCGA-33-AASD-01 8 134296536 134296536 C T NDRG1 Missense_Mutation p.D7N 0.49 deleterious(0) possibly_damaging(0.798) TCGA-33-AASD-01 8 139151325 139151325 G T FAM135B Missense_Mutation p.Q1269K 0.39 deleterious(0) probably_damaging(0.979) TCGA-33-AASD-01 8 139263244 139263244 C A FAM135B Missense_Mutation p.A128S 0.47 tolerated(1) benign(0.1) TCGA-33-AASD-01 8 140631220 140631220 C A KCNK9 Missense_Mutation p.V136L 0.33 deleterious(0) benign(0.109) TCGA-33-AASD-01 8 141557600 141557600 C - AGO2 Frame_Shift_Del p.G572Efs*3 0.35 TCGA-33-AASD-01 8 142367086 142367086 C A GPR20 Missense_Mutation p.G313V 0.30 tolerated(0.49) benign(0.021) TCGA-33-AASD-01 8 145692620 145692620 G T KIFC2 Missense_Mutation p.S122I 0.51 deleterious_low_confidence(0.01) possibly_damaging(0.851) TCGA-33-AASD-01 8 23702234 23702234 C T STC1 3'UTR 0.55 TCGA-33-AASD-01 8 48883271 48883271 G A MCM4 Silent p.A545A 0.11 TCGA-33-AASD-01 8 55537758 55537758 A C RP1 Missense_Mutation p.Q439P 0.30 tolerated(0.13) benign(0.01) TCGA-33-AASD-01 8 56270253 56270253 A T XKR4 Silent p.I274I 0.51 TCGA-33-AASD-01 8 56270390 56270390 T G XKR4 Missense_Mutation p.L320R 0.57 deleterious(0) probably_damaging(0.985) TCGA-33-AASD-01 8 56436425 56436425 C G XKR4 Missense_Mutation p.P531R 0.15 tolerated(0.22) possibly_damaging(0.564) TCGA-33-AASD-01 8 57025777 57025777 G A MOS Silent p.G255G 0.47 TCGA-33-AASD-01 8 61774870 61774870 T A CHD7 Missense_Mutation p.V2649D 0.29 probably_damaging(0.995) TCGA-33-AASD-01 8 6360784 6360784 T A ANGPT2 Splice_Site p.X444_splice 0.69 TCGA-33-AASD-01 8 69033184 69033184 G C PREX2 Silent p.L1208L 0.42 TCGA-33-AASD-01 8 70744328 70744328 C G SLCO5A1 Missense_Mutation p.R194P 0.16 deleterious(0.04) probably_damaging(0.999) TCGA-33-AASD-01 8 77762485 77762485 C A ZFHX4 Missense_Mutation p.P1284H 0.58 probably_damaging(0.95) TCGA-33-AASD-01 8 77767416 77767416 A C ZFHX4 Silent p.S2753S 0.36 TCGA-33-AASD-01 8 88885139 88885139 G T DCAF4L2 Missense_Mutation p.S354Y 0.42 deleterious(0) probably_damaging(0.982) TCGA-33-AASD-01 8 88885768 88885768 C G DCAF4L2 Silent p.L144L 0.23 TCGA-33-AASD-01 8 91963379 91963379 G T NECAB1 Missense_Mutation p.S326I 0.16 tolerated(0.46) possibly_damaging(0.617) TCGA-33-AASD-01 8 93088260 93088260 G T RUNX1T1 Intron 0.47 TCGA-33-AASD-01 9 115652264 115652264 A C SLC46A2 Missense_Mutation p.V233G 0.31 tolerated(0.38) benign(0.243) TCGA-33-AASD-01 9 119737549 119737549 G T ASTN2 Silent p.S558S 0.33 TCGA-33-AASD-01 9 137696867 137696867 G A COL5A1 Missense_Mutation p.G1054E 0.26 unknown(0) TCGA-33-AASD-01 9 139409742 139409742 C G NOTCH1 Missense_Mutation p.G672R 0.29 deleterious(0) probably_damaging(1) TCGA-33-AASD-01 9 17330767 17330767 C T CNTLN Silent p.S493S 0.69 TCGA-33-AASD-01 9 20953031 20953031 G T FOCAD Missense_Mutation p.A1367S 0.65 tolerated(0.17) benign(0.099) TCGA-33-AASD-01 9 23692768 23692768 C G ELAVL2 Missense_Mutation p.E289D 0.70 tolerated(0.23) possibly_damaging(0.48) TCGA-33-AASD-01 9 32541442 32541442 T A TOPORS Silent p.P1027P 0.63 TCGA-33-AASD-01 9 8524982 8524982 C G PTPRD Missense_Mutation p.V208L 0.55 deleterious(0.03) probably_damaging(0.984) TCGA-33-AASD-01 9 86276738 86276738 T G UBQLN1 Silent p.A578A 0.56 TCGA-33-AASD-01 9 95599553 95599553 G A ANKRD19P RNA 0.73 TCGA-33-AASD-01 X 103495494 103495494 G T ESX1 Silent p.A212A 0.70 TCGA-33-AASD-01 X 111698794 111698794 T C ZCCHC16 Missense_Mutation p.C280R 0.77 deleterious(0.02) probably_damaging(0.999) TCGA-33-AASD-01 X 125299713 125299713 T A DCAF12L2 Silent p.P65P 0.78 TCGA-33-AASD-01 X 152159571 152159571 A T PNMA5 Missense_Mutation p.V191E 0.85 deleterious(0) probably_damaging(0.998) TCGA-33-AASD-01 X 15342835 15342835 T C PIGA Missense_Mutation p.I380M 0.88 tolerated(0.06) benign(0.004) TCGA-33-AASD-01 X 30578209 30578209 G T CXorf21 Silent p.P88P 0.87 TCGA-33-AASD-01 X 30872736 30872736 G A TAB3 Missense_Mutation p.A349V 0.83 tolerated(0.61) benign(0.069) TCGA-33-AASD-01 X 48650391 48650391 G A GATA1 Missense_Mutation p.V121M 0.13 tolerated(0.24) benign(0) TCGA-33-AASD-01 X 56292168 56292168 G A KLF8 Missense_Mutation p.A213T 0.76 tolerated(0.29) benign(0.017) TCGA-33-AASD-01 X 65427069 65427069 G T HEPH Missense_Mutation p.G829V 0.70 tolerated(0.24) probably_damaging(1) TCGA-33-AASD-01 X 86887365 86887365 G C KLHL4 Missense_Mutation p.E494Q 0.74 deleterious(0) probably_damaging(0.999) TCGA-33-AASD-01 X 92927328 92927328 C G NAP1L3 Missense_Mutation p.G326R 0.79 tolerated(0.09) probably_damaging(0.995) TCGA-33-AASI-01 10 102059391 102059391 C A PKD2L1 Missense_Mutation p.G145V 0.23 deleterious(0.03) benign(0.261) TCGA-33-AASI-01 10 105363360 105363360 T C SH3PXD2A Missense_Mutation p.T511A 0.21 tolerated(1) benign(0.001) TCGA-33-AASI-01 10 115422514 115422514 T C NRAP Missense_Mutation p.K60R 0.11 tolerated(0.19) probably_damaging(0.999) TCGA-33-AASI-01 10 118203999 118203999 G T PNLIPRP3 Missense_Mutation p.V144L 0.12 tolerated(0.15) benign(0.28) TCGA-33-AASI-01 10 127569532 127569532 A G DHX32 5'UTR 0.45 TCGA-33-AASI-01 10 134178942 134178942 G C LRRC27 Missense_Mutation p.R435T 0.28 tolerated(0.48) benign(0.014) TCGA-33-AASI-01 10 134884496 134884496 C T GPR123 Missense_Mutation p.H22Y 0.14 deleterious_low_confidence(0) benign(0.291) TCGA-33-AASI-01 10 17645999 17645999 C G PTPLA Missense_Mutation p.G102A 0.19 tolerated(0.07) benign(0.387) TCGA-33-AASI-01 10 25510068 25510068 C A GPR158 Nonsense_Mutation p.C330* 0.29 TCGA-33-AASI-01 10 27375502 27375502 C T ANKRD26 Silent p.R225R 0.13 TCGA-33-AASI-01 10 28229731 28229731 C A ARMC4 Missense_Mutation p.A583S 0.15 tolerated(0.68) benign(0.005) TCGA-33-AASI-01 10 35896770 35896770 G T GJD4 Missense_Mutation p.R110L 0.28 tolerated(0.7) benign(0.002) TCGA-33-AASI-01 10 37430834 37430834 G A ANKRD30A Missense_Mutation p.D281N 0.26 tolerated(0.24) possibly_damaging(0.811) TCGA-33-AASI-01 10 37442540 37442540 C A ANKRD30A Missense_Mutation p.P527H 0.15 tolerated(0.23) probably_damaging(0.953) TCGA-33-AASI-01 10 38242647 38242647 T A ZNF25 Missense_Mutation p.Q93L 0.19 tolerated(0.12) benign(0.014) TCGA-33-AASI-01 10 61831182 61831182 G C ANK3 Missense_Mutation p.L3153V 0.22 probably_damaging(0.952) TCGA-33-AASI-01 10 62632019 62632019 C T RHOBTB1 Nonsense_Mutation p.W615* 0.31 TCGA-33-AASI-01 10 69882050 69882050 A G MYPN Silent p.R285R 0.16 TCGA-33-AASI-01 10 74810900 74810900 T C P4HA1 Missense_Mutation p.T271A 0.23 tolerated(0.75) benign(0.001) TCGA-33-AASI-01 10 98743694 98743694 G C C10orf12 Missense_Mutation p.R849S 0.15 deleterious(0) possibly_damaging(0.804) TCGA-33-AASI-01 11 101857572 101857572 G T KIAA1377 Missense_Mutation p.S1015I 0.26 deleterious(0) probably_damaging(0.998) TCGA-33-AASI-01 11 106647231 106647231 A T GUCY1A2 Silent p.A590A 0.17 TCGA-33-AASI-01 11 108218066 108218066 C G ATM Nonsense_Mutation p.S2882* 0.21 TCGA-33-AASI-01 11 118772708 118772708 C A BCL9L Missense_Mutation p.G582W 0.19 probably_damaging(0.998) TCGA-33-AASI-01 11 118772709 118772709 C A BCL9L Silent p.R581R 0.20 TCGA-33-AASI-01 11 124015966 124015966 C T VWA5A Missense_Mutation p.A726V 0.17 deleterious(0) probably_damaging(0.931) TCGA-33-AASI-01 11 124857021 124857021 A G CCDC15 Splice_Site p.X301_splice 0.32 TCGA-33-AASI-01 11 12534860 12534860 G C PARVA Missense_Mutation p.D291H 0.33 deleterious(0.01) possibly_damaging(0.864) TCGA-33-AASI-01 11 129814887 129814887 C G PRDM10 Missense_Mutation p.A181P 0.33 tolerated(0.14) probably_damaging(0.999) TCGA-33-AASI-01 11 129979438 129979438 C G APLP2 Missense_Mutation p.P74A 0.19 tolerated(0.07) benign(0.395) TCGA-33-AASI-01 11 130341111 130341111 C T ADAMTS15 Silent p.D637D 0.30 TCGA-33-AASI-01 11 2940628 2940628 C T SLC22A18 Silent p.L285L 0.28 TCGA-33-AASI-01 11 44331499 44331499 G T ALX4 Silent p.P38P 0.33 TCGA-33-AASI-01 11 44331500 44331500 G T ALX4 Missense_Mutation p.P38H 0.33 tolerated_low_confidence(0.06) possibly_damaging(0.704) TCGA-33-AASI-01 11 46563638 46563638 C T AMBRA1 Silent p.E553E 0.32 TCGA-33-AASI-01 11 46563704 46563704 C T AMBRA1 Silent p.R531R 0.29 TCGA-33-AASI-01 11 49221964 49221964 C A FOLH1 Missense_Mutation p.G85V 0.21 deleterious(0) probably_damaging(1) TCGA-33-AASI-01 11 49221965 49221965 C A FOLH1 Nonsense_Mutation p.G85* 0.22 TCGA-33-AASI-01 11 55433645 55433645 C A OR4C6 3'UTR 0.38 TCGA-33-AASI-01 11 55735903 55735904 - G OR10AG1 Frame_Shift_Ins p.N13Qfs*8 0.28 TCGA-33-AASI-01 11 56086142 56086142 C G OR8K3 Nonsense_Mutation p.Y120* 0.33 TCGA-33-AASI-01 11 56467875 56467875 C A OR9G1 Missense_Mutation p.S4R 0.22 tolerated(0.28) benign(0.001) TCGA-33-AASI-01 11 58477693 58477693 T A GLYAT Intron 0.33 TCGA-33-AASI-01 11 61624485 61624485 C T FADS2 Silent p.Y249Y 0.27 TCGA-33-AASI-01 11 61732140 61732140 T C FTH1 3'UTR 0.28 TCGA-33-AASI-01 11 62381149 62381149 G A ROM1 Silent p.A132A 0.23 TCGA-33-AASI-01 11 62521449 62521449 A G ZBTB3 Missense_Mutation p.V29A 0.22 tolerated_low_confidence(0.51) benign(0) TCGA-33-AASI-01 11 63141230 63141230 G T SLC22A9 Silent p.G207G 0.23 TCGA-33-AASI-01 11 63667526 63667526 G A MARK2 Missense_Mutation p.V238I 0.25 deleterious(0) probably_damaging(0.997) TCGA-33-AASI-01 11 64535698 64535698 G A SF1 Silent p.L441L 0.16 TCGA-33-AASI-01 11 65988692 65988692 A C PACS1 Missense_Mutation p.S423R 0.29 tolerated(0.07) benign(0.033) TCGA-33-AASI-01 11 67288573 67288573 C T CABP2 Missense_Mutation p.R101Q 0.31 tolerated(0.1) benign(0.015) TCGA-33-AASI-01 11 68174113 68174113 C A LRP5 Silent p.I641I 0.30 TCGA-33-AASI-01 11 70003109 70003109 G T ANO1 Missense_Mutation p.L520F 0.32 tolerated(0.89) benign(0.314) TCGA-33-AASI-01 11 77412580 77412580 T A RSF1 Missense_Mutation p.K565I 0.08 tolerated_low_confidence(0.12) possibly_damaging(0.748) TCGA-33-AASI-01 11 77921346 77921346 G T USP35 Silent p.L815L 0.17 TCGA-33-AASI-01 11 85459428 85459428 T C SYTL2 Missense_Mutation p.K47R 0.16 tolerated(0.09) probably_damaging(0.995) TCGA-33-AASI-01 12 100774507 100774507 G C SLC17A8 Missense_Mutation p.D44H 0.26 deleterious(0.01) benign(0.258) TCGA-33-AASI-01 12 108079679 108079679 G A PWP1 Translation_Start_Site p.M1? 0.28 deleterious_low_confidence(0.03) possibly_damaging(0.775) TCGA-33-AASI-01 12 109526174 109526174 G A ALKBH2 Missense_Mutation p.S208F 0.27 tolerated(0.06) benign(0.191) TCGA-33-AASI-01 12 109530533 109530533 T C ALKBH2 Missense_Mutation p.Q20R 0.22 tolerated_low_confidence(0.42) benign(0.001) TCGA-33-AASI-01 12 113534677 113534677 G C DTX1 Missense_Mutation p.S599T 0.18 deleterious(0) possibly_damaging(0.497) TCGA-33-AASI-01 12 117696848 117696848 G T NOS1 Missense_Mutation p.P819T 0.17 deleterious(0) probably_damaging(1) TCGA-33-AASI-01 12 122618279 122618279 A T MLXIP Missense_Mutation p.T493S 0.33 tolerated(0.06) possibly_damaging(0.701) TCGA-33-AASI-01 12 123265872 123265872 C G CCDC62 Missense_Mutation p.L131V 0.23 deleterious(0) probably_damaging(0.997) TCGA-33-AASI-01 12 126004148 126004148 G T TMEM132B Missense_Mutation p.V419L 0.22 tolerated(0.13) benign(0.362) TCGA-33-AASI-01 12 14018768 14018768 G T GRIN2B Silent p.G125G 0.25 TCGA-33-AASI-01 12 18800973 18800973 G A PIK3C2G 3'UTR 0.19 TCGA-33-AASI-01 12 20766538 20766538 C A PDE3A Missense_Mutation p.H391Q 0.20 tolerated(0.18) probably_damaging(0.998) TCGA-33-AASI-01 12 21069235 21069235 G A SLCO1B3 3'UTR 0.29 TCGA-33-AASI-01 12 3600789 3600789 C T PRMT8 5'UTR 0.30 TCGA-33-AASI-01 12 40734160 40734160 C A LRRK2 Missense_Mutation p.L2005M 0.19 deleterious(0) probably_damaging(0.986) TCGA-33-AASI-01 12 4479657 4479657 G A FGF23 Missense_Mutation p.P203L 0.23 tolerated(0.08) benign(0.028) TCGA-33-AASI-01 12 4705398 4705398 G - DYRK4 Frame_Shift_Del p.D123Ifs*10 0.22 TCGA-33-AASI-01 12 52374850 52374850 G T ACVR1B Missense_Mutation p.W226C 0.17 deleterious(0) probably_damaging(1) TCGA-33-AASI-01 12 53647678 53647678 T C MFSD5 Silent p.A460A 0.19 TCGA-33-AASI-01 12 56384574 56384574 A G RAB5B Missense_Mutation p.M142V 0.32 tolerated(0.24) benign(0.001) TCGA-33-AASI-01 12 56873657 56873657 G C GLS2 Nonsense_Mutation p.S104* 0.14 TCGA-33-AASI-01 12 60169169 60169169 C T SLC16A7 Missense_Mutation p.L365F 0.24 deleterious(0) probably_damaging(0.952) TCGA-33-AASI-01 12 6639959 6639959 C G NCAPD2 Missense_Mutation p.P1314A 0.20 tolerated(0.06) benign(0.003) TCGA-33-AASI-01 12 66724969 66724969 G A HELB Silent p.G902G 0.25 TCGA-33-AASI-01 12 80672879 80672879 G T OTOGL Missense_Mutation p.R945L 0.20 deleterious(0) probably_damaging(0.999) TCGA-33-AASI-01 12 81719568 81719568 C G PPFIA2 Missense_Mutation p.R877T 0.30 deleterious(0) possibly_damaging(0.564) TCGA-33-AASI-01 12 81769670 81769670 G T PPFIA2 Missense_Mutation p.R346S 0.16 deleterious(0) probably_damaging(0.91) TCGA-33-AASI-01 12 85521726 85521726 A G LRRIQ1 Missense_Mutation p.K1375R 0.15 tolerated(0.26) benign(0.218) TCGA-33-AASI-01 12 86199609 86199609 T C RASSF9 Missense_Mutation p.H60R 0.16 deleterious(0.04) probably_damaging(0.948) TCGA-33-AASI-01 12 9316855 9316855 C G PZP Missense_Mutation p.V830L 0.29 deleterious(0) probably_damaging(0.943) TCGA-33-AASI-01 12 94975954 94975954 C A TMCC3 Nonsense_Mutation p.G147* 0.30 TCGA-33-AASI-01 12 977641 977641 G C WNK1 Intron 0.18 TCGA-33-AASI-01 13 101944590 101944590 G C NALCN Silent p.L309L 0.36 TCGA-33-AASI-01 13 21557650 21557650 T C LATS2 Missense_Mutation p.Y732C 0.34 deleterious(0) probably_damaging(1) TCGA-33-AASI-01 13 24871655 24871655 A C SPATA13 Missense_Mutation p.Y1122S 0.25 tolerated(0.05) benign(0.267) TCGA-33-AASI-01 13 49933875 49933875 G C CAB39L Missense_Mutation p.H124D 0.09 tolerated(0.7) benign(0.002) TCGA-33-AASI-01 13 70681423 70681423 C A KLHL1 Nonsense_Mutation p.G137* 0.37 TCGA-33-AASI-01 13 76140897 76140897 G T UCHL3 Missense_Mutation p.V84L 0.24 tolerated(0.32) benign(0.04) TCGA-33-AASI-01 13 77566274 77566274 G T CLN5 Missense_Mutation p.R63L 0.29 tolerated_low_confidence(0.16) benign(0.433) TCGA-33-AASI-01 14 101531703 101531703 C A MIR409 RNA 0.16 TCGA-33-AASI-01 14 102483180 102483180 C G DYNC1H1 Silent p.A2564A 0.12 TCGA-33-AASI-01 14 103434991 103434991 G C CDC42BPB Missense_Mutation p.I686M 0.13 tolerated(0.06) benign(0.01) TCGA-33-AASI-01 14 105410573 105410573 G T AHNAK2 Missense_Mutation p.P3739T 0.17 probably_damaging(0.991) TCGA-33-AASI-01 14 107170012 107170012 G T IGHV1-69 Silent p.T90T 0.28 TCGA-33-AASI-01 14 107170110 107170110 G A IGHV1-69 Nonsense_Mutation p.Q58* 0.06 TCGA-33-AASI-01 14 21542331 21542331 G C ARHGEF40 Missense_Mutation p.E148Q 0.18 deleterious(0.02) probably_damaging(0.968) TCGA-33-AASI-01 14 22236746 22236746 G T TRAV6 Missense_Mutation p.W4L 0.50 deleterious_low_confidence(0) unknown(0) TCGA-33-AASI-01 14 23451221 23451221 G C AJUBA Nonsense_Mutation p.Y85* 0.38 TCGA-33-AASI-01 14 23549553 23549553 G A ACIN1 Missense_Mutation p.P389S 0.45 possibly_damaging(0.677) TCGA-33-AASI-01 14 24429109 24429109 A G DHRS4 Splice_Site p.X103_splice 0.60 TCGA-33-AASI-01 14 26917842 26917842 C A NOVA1 Missense_Mutation p.A283S 0.52 tolerated(0.32) unknown(0) TCGA-33-AASI-01 14 52481778 52481778 G T NID2 Missense_Mutation p.P1082T 0.60 deleterious(0) probably_damaging(0.998) TCGA-33-AASI-01 14 72139184 72139184 C T SIPA1L1 Silent p.A983A 0.18 TCGA-33-AASI-01 14 73750848 73750848 C T NUMB Missense_Mutation p.R297H 0.20 deleterious(0) probably_damaging(0.999) TCGA-33-AASI-01 14 78221359 78221359 T A SNW1 Missense_Mutation p.E40V 0.41 tolerated(0.28) benign(0.006) TCGA-33-AASI-01 14 88737088 88737088 C G KCNK10 Intron 0.18 TCGA-33-AASI-01 14 94048610 94048610 C G UNC79 Missense_Mutation p.P731R 0.46 tolerated(0.08) benign(0.023) TCGA-33-AASI-01 14 94568211 94568211 C A IFI27L1 Nonsense_Mutation p.S38* 0.14 TCGA-33-AASI-01 14 99724148 99724148 G A BCL11B Silent p.I29I 0.16 TCGA-33-AASI-01 15 23303835 23303835 C T HERC2P2 RNA 0.42 TCGA-33-AASI-01 15 25940151 25940151 C T ATP10A Missense_Mutation p.R968H 0.28 tolerated(0.27) benign(0.001) TCGA-33-AASI-01 15 40581068 40581068 C - PLCB2 Frame_Shift_Del p.A1136Qfs*3 0.32 TCGA-33-AASI-01 15 40659836 40659836 G T DISP2 Missense_Mutation p.R508L 0.32 deleterious(0.01) probably_damaging(0.954) TCGA-33-AASI-01 15 40660844 40660844 G T DISP2 Missense_Mutation p.W844L 0.24 deleterious(0) probably_damaging(1) TCGA-33-AASI-01 15 43939512 43939512 C AA CATSPER2 Frame_Shift_Ins p.W100Ffs*7 0.22 TCGA-33-AASI-01 15 44943765 44943765 C A SPG11 Missense_Mutation p.M460I 0.07 tolerated(0.22) benign(0.136) TCGA-33-AASI-01 15 59180636 59180636 C G SLTM Missense_Mutation p.E775Q 0.34 deleterious(0.01) probably_damaging(0.978) TCGA-33-AASI-01 15 65114811 65114811 T G PIF1 Splice_Site p.X187_splice 0.14 TCGA-33-AASI-01 15 66857633 66857633 T A LCTL Missense_Mutation p.K24M 0.15 tolerated(0.11) benign(0.008) TCGA-33-AASI-01 15 74963902 74963902 C A EDC3 Missense_Mutation p.Q126H 0.29 tolerated(0.12) benign(0.004) TCGA-33-AASI-01 15 81234679 81234679 G A KIAA1199 Splice_Site p.X1233_splice 0.29 TCGA-33-AASI-01 15 89386710 89386710 G T ACAN Missense_Mutation p.M294I 0.35 deleterious(0) unknown(0) TCGA-33-AASI-01 15 89398211 89398211 C A ACAN Missense_Mutation p.P799T 0.33 deleterious(0.03) benign(0) TCGA-33-AASI-01 16 21069434 21069434 G T DNAH3 Silent p.S1299S 0.44 TCGA-33-AASI-01 16 28969912 28969912 A T NFATC2IP Intron 0.20 TCGA-33-AASI-01 16 61854856 61854856 G C CDH8 Missense_Mutation p.Q333E 0.10 deleterious(0.01) probably_damaging(0.987) TCGA-33-AASI-01 16 67241880 67241880 C T LRRC29 Silent p.L133L 0.38 TCGA-33-AASI-01 16 70365666 70365666 A G DDX19B Silent p.K355K 0.27 TCGA-33-AASI-01 16 70713227 70713227 C G MTSS1L Splice_Site p.X153_splice 0.18 TCGA-33-AASI-01 16 72828425 72828425 A G ZFHX3 Missense_Mutation p.L2719P 0.11 unknown(0) TCGA-33-AASI-01 16 75654666 75654666 C A ADAT1 Missense_Mutation p.C11F 0.30 deleterious(0) probably_damaging(0.999) TCGA-33-AASI-01 16 76555205 76555205 G T CNTNAP4 Missense_Mutation p.R772L 0.33 tolerated(0.15) benign(0.055) TCGA-33-AASI-01 16 89800428 89800428 G T ZNF276 Missense_Mutation p.V486L 0.13 deleterious(0.04) benign(0.104) TCGA-33-AASI-01 17 10248643 10248643 A T MYH13 Missense_Mutation p.L487Q 0.51 deleterious(0) probably_damaging(1) TCGA-33-AASI-01 17 18923760 18923760 C G SLC5A10 3'UTR 0.50 TCGA-33-AASI-01 17 29541542 29541542 A G NF1 Missense_Mutation p.Y489C 0.35 tolerated(0.08) possibly_damaging(0.635) TCGA-33-AASI-01 17 32957170 32957170 G T TMEM132E Missense_Mutation p.K404N 0.32 deleterious(0) possibly_damaging(0.858) TCGA-33-AASI-01 17 33475421 33475421 C A UNC45B Silent p.R47R 0.39 TCGA-33-AASI-01 17 39779227 39779227 G T KRT17 Missense_Mutation p.L164M 0.38 deleterious(0) possibly_damaging(0.787) TCGA-33-AASI-01 17 47655967 47655967 G A NXPH3 Missense_Mutation p.G22S 0.14 deleterious(0.04) benign(0.333) TCGA-33-AASI-01 17 48761015 48761015 C T ABCC3 Silent p.P1284P 0.56 TCGA-33-AASI-01 17 62050031 62050031 G T SCN4A Missense_Mutation p.D57E 0.50 deleterious(0) benign(0.34) TCGA-33-AASI-01 17 62521897 62521897 G A CEP95 Missense_Mutation p.D307N 0.33 tolerated(0.23) benign(0.014) TCGA-33-AASI-01 17 65914927 65914927 C G BPTF Missense_Mutation p.P1801A 0.49 possibly_damaging(0.877) TCGA-33-AASI-01 17 66871419 66871419 T C ABCA8 Missense_Mutation p.Q1498R 0.62 tolerated(0.16) benign(0.023) TCGA-33-AASI-01 17 66972131 66972131 C T ABCA9 Silent p.E1600E 0.62 TCGA-33-AASI-01 17 72613384 72613384 G A CD300E Silent p.F87F 0.64 TCGA-33-AASI-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.55 deleterious(0) probably_damaging(1) TCGA-33-AASI-01 17 79639113 79639113 G A CCDC137 Silent p.V196V 0.37 TCGA-33-AASI-01 17 80606283 80606283 C G WDR45B 5'UTR 0.20 TCGA-33-AASI-01 18 118428 118428 C T ROCK1P1 RNA 0.22 TCGA-33-AASI-01 18 19231538 19231538 C G ABHD3 3'UTR 0.19 TCGA-33-AASI-01 18 19379847 19379847 C G MIB1 Missense_Mutation p.S428C 0.12 deleterious(0) possibly_damaging(0.89) TCGA-33-AASI-01 18 22806262 22806262 A C ZNF521 Missense_Mutation p.S540R 0.14 tolerated(0.14) benign(0.345) TCGA-33-AASI-01 18 25570123 25570123 G A CDH2 Silent p.A512A 0.07 TCGA-33-AASI-01 18 28986253 28986253 C G DSG4 Missense_Mutation p.T617S 0.35 tolerated(0.35) benign(0.01) TCGA-33-AASI-01 18 334993 334993 G T COLEC12 Missense_Mutation p.S522Y 0.35 deleterious(0.01) unknown(0) TCGA-33-AASI-01 18 50432513 50432513 T C DCC Missense_Mutation p.I171T 0.35 tolerated(0.25) benign(0.283) TCGA-33-AASI-01 18 60052049 60052049 G C TNFRSF11A Missense_Mutation p.D545H 0.41 deleterious(0) probably_damaging(1) TCGA-33-AASI-01 18 9525831 9525831 G A RALBP1 Silent p.L443L 0.21 TCGA-33-AASI-01 19 110682 110682 G A OR4F17 Missense_Mutation p.V2M 0.09 deleterious(0.01) possibly_damaging(0.832) TCGA-33-AASI-01 19 11485554 11485554 T C SWSAP1 Silent p.L45L 0.41 TCGA-33-AASI-01 19 13919920 13919920 G A ZSWIM4 Missense_Mutation p.A300T 0.45 deleterious(0.02) possibly_damaging(0.682) TCGA-33-AASI-01 19 16545303 16545303 T C EPS15L1 Splice_Site p.X125_splice 0.40 TCGA-33-AASI-01 19 30934945 30934945 A G ZNF536 Missense_Mutation p.K159R 0.33 tolerated(0.08) probably_damaging(0.998) TCGA-33-AASI-01 19 33486996 33486996 G C RHPN2 Silent p.L452L 0.28 TCGA-33-AASI-01 19 36303386 36303386 G T PRODH2 Missense_Mutation p.Q159K 0.33 deleterious(0) probably_damaging(0.999) TCGA-33-AASI-01 19 36332717 36332717 G T NPHS1 Silent p.T905T 0.32 TCGA-33-AASI-01 19 38865474 38865474 C T PSMD8 Missense_Mutation p.S78F 0.38 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-33-AASI-01 19 38951160 38951160 C A RYR1 Missense_Mutation p.P836T 0.21 possibly_damaging(0.474) TCGA-33-AASI-01 19 40721027 40721027 C T MAP3K10 Missense_Mutation p.P898L 0.28 deleterious(0.03) probably_damaging(0.975) TCGA-33-AASI-01 19 41111446 41111446 G T LTBP4 Missense_Mutation p.R260L 0.20 tolerated(0.1) benign(0.446) TCGA-33-AASI-01 19 4298240 4298240 G T TMIGD2 Missense_Mutation p.T50K 0.25 tolerated(0.17) benign(0) TCGA-33-AASI-01 19 44681546 44681546 G T ZNF226 Missense_Mutation p.A711S 0.23 tolerated(1) benign(0.226) TCGA-33-AASI-01 19 45911616 45911616 G A CD3EAP Silent p.L130L 0.21 TCGA-33-AASI-01 19 49224073 49224073 G A RASIP1 Silent p.P958P 0.26 TCGA-33-AASI-01 19 51532530 51532530 G C KLK12 Intron 0.19 TCGA-33-AASI-01 19 54215554 54215554 G A MIR517A RNA 0.24 TCGA-33-AASI-01 19 55098835 55098835 C G LILRA2 3'UTR 0.26 TCGA-33-AASI-01 19 55175215 55175215 C A LILRB4 Missense_Mutation p.P25H 0.28 tolerated(0.12) benign(0.264) TCGA-33-AASI-01 19 55817795 55817795 C T BRSK1 Missense_Mutation p.S689F 0.28 deleterious(0.03) possibly_damaging(0.884) TCGA-33-AASI-01 19 56459497 56459497 G T NLRP8 Nonsense_Mutation p.E77* 0.17 TCGA-33-AASI-01 19 59063435 59063435 C G CHMP2A Missense_Mutation p.D156H 0.24 deleterious(0) probably_damaging(0.986) TCGA-33-AASI-01 19 6479023 6479023 G T DENND1C Missense_Mutation p.T74K 0.30 deleterious(0) probably_damaging(1) TCGA-33-AASI-01 19 7534888 7534888 G C ARHGEF18 Missense_Mutation p.G1108R 0.25 tolerated(0.19) benign(0.224) TCGA-33-AASI-01 19 8987096 8987096 T A MUC16 Missense_Mutation p.Q13965L 0.41 probably_damaging(0.97) TCGA-33-AASI-01 19 9085552 9085552 G T MUC16 Missense_Mutation p.T2088N 0.30 unknown(0) TCGA-33-AASI-01 19 9581111 9581111 G A ZNF560 Silent p.Y135Y 0.35 TCGA-33-AASI-01 1 11708784 11708784 C A FBXO2 Silent p.R286R 0.17 TCGA-33-AASI-01 1 1248492 1248492 C A CPSF3L Missense_Mutation p.G358C 0.38 deleterious(0) probably_damaging(0.999) TCGA-33-AASI-01 1 12785440 12785440 C A AADACL3 Nonsense_Mutation p.S177* 0.16 TCGA-33-AASI-01 1 12835739 12835739 G A PRAMEF12 Missense_Mutation p.G114D 0.26 tolerated(0.36) benign(0.003) TCGA-33-AASI-01 1 149879317 149879317 T C SV2A Missense_Mutation p.D538G 0.19 deleterious(0.01) possibly_damaging(0.902) TCGA-33-AASI-01 1 155254440 155254440 C G HCN3 Silent p.L327L 0.24 TCGA-33-AASI-01 1 155271199 155271199 G T PKLR 5'UTR 0.27 TCGA-33-AASI-01 1 159906690 159906690 G A IGSF9 Nonsense_Mutation p.Q137* 0.29 TCGA-33-AASI-01 1 161059058 161059058 C G PVRL4 Missense_Mutation p.W10S 0.22 deleterious_low_confidence(0) benign(0.046) TCGA-33-AASI-01 1 167339451 167339451 G C POU2F1 Missense_Mutation p.Q94H 0.39 tolerated_low_confidence(0.11) unknown(0) TCGA-33-AASI-01 1 168148269 168148269 G T TIPRL 5'UTR 0.28 TCGA-33-AASI-01 1 169394068 169394068 C G CCDC181 Missense_Mutation p.S33T 0.24 tolerated(0.21) benign(0.167) TCGA-33-AASI-01 1 172578980 172578980 G T SUCO Nonsense_Mutation p.E1116* 0.05 TCGA-33-AASI-01 1 176918324 176918324 C A ASTN1 Missense_Mutation p.C684F 0.27 deleterious(0) probably_damaging(0.997) TCGA-33-AASI-01 1 177199139 177199139 C T BRINP2 Missense_Mutation p.P43S 0.19 tolerated_low_confidence(0.71) benign(0.001) TCGA-33-AASI-01 1 181759660 181759660 G T CACNA1E Missense_Mutation p.D1956Y 0.17 deleterious(0.01) probably_damaging(0.92) TCGA-33-AASI-01 1 181767643 181767643 T A CACNA1E Silent p.A2205A 0.21 TCGA-33-AASI-01 1 184703745 184703745 T A EDEM3 Silent p.A126A 0.13 TCGA-33-AASI-01 1 193045642 193045642 T G TROVE2 Silent p.A271A 0.19 TCGA-33-AASI-01 1 196874319 196874319 C A CFHR4 Missense_Mutation p.T112K 0.22 tolerated(0.14) benign(0.139) TCGA-33-AASI-01 1 197021958 197021958 C A F13B Missense_Mutation p.C454F 0.14 deleterious(0) probably_damaging(0.996) TCGA-33-AASI-01 1 201027538 201027538 C A CACNA1S Missense_Mutation p.D1203Y 0.27 deleterious(0) probably_damaging(0.993) TCGA-33-AASI-01 1 201752531 201752531 C G NAV1 Intron 0.33 TCGA-33-AASI-01 1 204587401 204587401 G A LRRN2 Missense_Mutation p.R574C 0.25 deleterious(0) probably_damaging(1) TCGA-33-AASI-01 1 207646389 207646389 G T CR2 Missense_Mutation p.G615C 0.30 deleterious(0.03) probably_damaging(0.959) TCGA-33-AASI-01 1 209955591 209955591 G C TRAF3IP3 3'UTR 0.19 TCGA-33-AASI-01 1 214170601 214170601 G T PROX1 Missense_Mutation p.Q241H 0.17 deleterious(0.05) possibly_damaging(0.657) TCGA-33-AASI-01 1 222717472 222717472 C G HHIPL2 Silent p.R127R 0.24 TCGA-33-AASI-01 1 224922328 224922328 C T CNIH3 Silent p.A125A 0.27 TCGA-33-AASI-01 1 227920060 227920060 C T JMJD4 3'UTR 0.30 TCGA-33-AASI-01 1 228003446 228003446 C G PRSS38 Missense_Mutation p.P10R 0.23 tolerated_low_confidence(0.63) unknown(0) TCGA-33-AASI-01 1 228509454 228509454 G C OBSCN Missense_Mutation p.C5928S 0.21 probably_damaging(0.998) TCGA-33-AASI-01 1 228557667 228557667 C T OBSCN Silent p.A7621A 0.09 TCGA-33-AASI-01 1 229738112 229738112 C T TAF5L Missense_Mutation p.E268K 0.17 tolerated(0.3) benign(0.253) TCGA-33-AASI-01 1 235416075 235416075 C T ARID4B Silent p.L108L 0.29 TCGA-33-AASI-01 1 236141050 236141050 G T NID1 3'UTR 0.17 TCGA-33-AASI-01 1 237494193 237494193 C A RYR2 Missense_Mutation p.L62I 0.13 possibly_damaging(0.756) TCGA-33-AASI-01 1 237796936 237796936 G A RYR2 Missense_Mutation p.R2205H 0.23 probably_damaging(1) TCGA-33-AASI-01 1 237796937 237796937 T A RYR2 Silent p.R2205R 0.23 TCGA-33-AASI-01 1 24411008 24411008 C T MYOM3 Silent p.V640V 0.39 TCGA-33-AASI-01 1 247737761 247737761 T A GCSAML 3'UTR 0.21 TCGA-33-AASI-01 1 247752240 247752240 G T OR2G2 Silent p.V193V 0.23 TCGA-33-AASI-01 1 248004275 248004275 T A OR11L1 Missense_Mutation p.K308N 0.17 tolerated(0.08) benign(0.003) TCGA-33-AASI-01 1 248814078 248814078 C A OR2T27 Missense_Mutation p.L36F 0.12 tolerated(0.19) benign(0.001) TCGA-33-AASI-01 1 24921979 24921979 A G NCMAP Missense_Mutation p.R20G 0.19 deleterious(0.01) benign(0.001) TCGA-33-AASI-01 1 27428959 27428959 C G SLC9A1 Missense_Mutation p.K579N 0.35 deleterious(0) possibly_damaging(0.889) TCGA-33-AASI-01 1 32384694 32384694 G C PTP4A2 5'UTR 0.15 TCGA-33-AASI-01 1 33631091 33631091 C T TRIM62 Missense_Mutation p.R162Q 0.38 tolerated(0.54) benign(0.005) TCGA-33-AASI-01 1 33985117 33985117 G T CSMD2 3'UTR 0.30 TCGA-33-AASI-01 1 38300822 38300822 T C MTF1 Missense_Mutation p.K307E 0.36 deleterious(0) benign(0.345) TCGA-33-AASI-01 1 55451972 55451972 G T TMEM61 Missense_Mutation p.C73F 0.10 tolerated(0.1) benign(0.001) TCGA-33-AASI-01 1 6705132 6705132 C A DNAJC11 Missense_Mutation p.D317Y 0.10 deleterious(0) benign(0.128) TCGA-33-AASI-01 1 67861507 67861507 C G IL12RB2 Missense_Mutation p.S775C 0.30 deleterious(0.01) benign(0.375) TCGA-33-AASI-01 1 79385912 79385912 C A ELTD1 Missense_Mutation p.A473S 0.25 deleterious(0.02) probably_damaging(0.996) TCGA-33-AASI-01 1 84867669 84867669 A G DNASE2B Missense_Mutation p.R71G 0.27 tolerated(0.33) benign(0.004) TCGA-33-AASI-01 1 94058047 94058047 T C BCAR3 Intron 0.30 TCGA-33-AASI-01 1 98165007 98165007 C A DPYD Missense_Mutation p.G194C 0.39 deleterious(0.01) probably_damaging(1) TCGA-33-AASI-01 20 21687020 21687020 T A PAX1 Intron 0.24 TCGA-33-AASI-01 20 31374424 31374424 G A DNMT3B Silent p.P141P 0.22 TCGA-33-AASI-01 20 33028128 33028128 C G ITCH Missense_Mutation p.T324S 0.21 tolerated(1) benign(0) TCGA-33-AASI-01 20 36767837 36767837 G C TGM2 Missense_Mutation p.T440S 0.30 deleterious(0) probably_damaging(0.992) TCGA-33-AASI-01 20 36848143 36848143 C A KIAA1755 Missense_Mutation p.L815F 0.27 deleterious(0.01) probably_damaging(0.911) TCGA-33-AASI-01 20 37657097 37657097 G T DHX35 Missense_Mutation p.G613V 0.33 deleterious(0) probably_damaging(0.998) TCGA-33-AASI-01 20 4228567 4228567 C T ADRA1D Silent p.A346A 0.33 TCGA-33-AASI-01 20 43629101 43629101 G C STK4 Silent p.V300V 0.31 TCGA-33-AASI-01 20 55968354 55968354 G T RBM38 Missense_Mutation p.Q127H 0.10 deleterious(0.04) benign(0.027) TCGA-33-AASI-01 20 62699428 62699428 G T TCEA2 Silent p.R90R 0.15 TCGA-33-AASI-01 20 742378 742378 G A SLC52A3 Silent p.L388L 0.32 TCGA-33-AASI-01 20 9546959 9546959 C T PAK7 Missense_Mutation p.A355T 0.26 tolerated(0.39) benign(0) TCGA-33-AASI-01 21 47419106 47419106 G T COL6A1 Missense_Mutation p.G572W 0.33 deleterious(0) probably_damaging(1) TCGA-33-AASI-01 22 21242171 21242171 C A SNAP29 3'UTR 0.32 TCGA-33-AASI-01 22 22868924 22868924 G T ZNF280A Missense_Mutation p.P344H 0.25 deleterious(0) probably_damaging(0.971) TCGA-33-AASI-01 22 29886488 29886488 G C NEFH Missense_Mutation p.E953D 0.11 tolerated_low_confidence(0.07) unknown(0) TCGA-33-AASI-01 22 30818321 30818321 C T SEC14L2 Silent p.F379F 0.18 TCGA-33-AASI-01 22 40257800 40257800 G T ENTHD1 Missense_Mutation p.L188I 0.25 deleterious(0.01) possibly_damaging(0.758) TCGA-33-AASI-01 22 42950020 42950020 G A SERHL2 5'UTR 0.25 TCGA-33-AASI-01 22 42950022 42950022 G A SERHL2 5'UTR 0.27 TCGA-33-AASI-01 2 103011030 103011030 G T IL18R1 Nonsense_Mutation p.E405* 0.22 TCGA-33-AASI-01 2 11777914 11777914 G A GREB1 Missense_Mutation p.A1807T 0.28 tolerated(0.06) benign(0.02) TCGA-33-AASI-01 2 120003465 120003465 G C STEAP3 Missense_Mutation p.E141D 0.20 deleterious(0) probably_damaging(0.991) TCGA-33-AASI-01 2 128471199 128471199 C A WDR33 Missense_Mutation p.R1089L 0.27 deleterious_low_confidence(0) benign(0.304) TCGA-33-AASI-01 2 131096757 131096757 C T CCDC115 Nonsense_Mutation p.W160* 0.29 TCGA-33-AASI-01 2 141272306 141272306 C G LRP1B Missense_Mutation p.A2729P 0.28 benign(0.056) TCGA-33-AASI-01 2 141571291 141571291 C G LRP1B Missense_Mutation p.G1765A 0.07 possibly_damaging(0.794) TCGA-33-AASI-01 2 1491682 1491682 A G TPO Missense_Mutation p.R563G 0.16 deleterious(0) possibly_damaging(0.686) TCGA-33-AASI-01 2 1520706 1520706 T C TPO Missense_Mutation p.L857P 0.49 deleterious(0) possibly_damaging(0.794) TCGA-33-AASI-01 2 155098632 155098632 C T GALNT13 Missense_Mutation p.T134I 0.31 deleterious(0) probably_damaging(0.99) TCGA-33-AASI-01 2 158114807 158114807 A G GALNT5 Missense_Mutation p.I71M 0.25 tolerated(0.14) benign(0.005) TCGA-33-AASI-01 2 166895974 166895974 C A SCN1A Missense_Mutation p.A850S 0.16 tolerated(0.57) benign(0.074) TCGA-33-AASI-01 2 170060552 170060552 G T LRP2 Missense_Mutation p.Q2649K 0.25 benign(0.064) TCGA-33-AASI-01 2 177034213 177034213 C G HOXD3 Missense_Mutation p.P124R 0.18 deleterious(0.01) probably_damaging(0.965) TCGA-33-AASI-01 2 179475822 179475822 G A TTN Missense_Mutation p.L17012F 0.23 TCGA-33-AASI-01 2 179611625 179611626 - A TTN Intron 0.15 TCGA-33-AASI-01 2 185802891 185802891 C A ZNF804A Missense_Mutation p.A923D 0.23 tolerated(0.11) probably_damaging(0.99) TCGA-33-AASI-01 2 197951416 197951416 T C ANKRD44 Missense_Mutation p.D410G 0.13 deleterious(0) probably_damaging(1) TCGA-33-AASI-01 2 204335003 204335003 G A RAPH1 Intron 0.25 TCGA-33-AASI-01 2 207814347 207814347 A T CPO Missense_Mutation p.L25F 0.09 deleterious(0.02) possibly_damaging(0.577) TCGA-33-AASI-01 2 220115908 220115908 G C TUBA4A Missense_Mutation p.I171M 0.22 deleterious_low_confidence(0) possibly_damaging(0.825) TCGA-33-AASI-01 2 239147651 239147651 C A HES6 Silent p.G164G 0.19 TCGA-33-AASI-01 2 24975016 24975016 G C NCOA1 Missense_Mutation p.G1291A 0.12 tolerated(0.43) probably_damaging(0.998) TCGA-33-AASI-01 2 24991302 24991302 G C NCOA1 3'UTR 0.21 TCGA-33-AASI-01 2 27315274 27315274 C G KHK Missense_Mutation p.P56R 0.22 tolerated(0.12) benign(0.04) TCGA-33-AASI-01 2 29379229 29379229 C T CLIP4 Missense_Mutation p.T392I 0.25 tolerated(0.16) benign(0.003) TCGA-33-AASI-01 2 32422776 32422776 C G SLC30A6 Missense_Mutation p.S222R 0.24 deleterious(0.01) benign(0.358) TCGA-33-AASI-01 2 38893480 38893480 C T GALM Silent p.F59F 0.43 TCGA-33-AASI-01 2 55214715 55214715 A C RTN4 Missense_Mutation p.L1045V 0.33 deleterious(0) probably_damaging(1) TCGA-33-AASI-01 2 56419695 56419695 G C CCDC85A Missense_Mutation p.K120N 0.19 deleterious(0) probably_damaging(0.999) TCGA-33-AASI-01 2 69174303 69174303 G A GKN2 Silent p.L97L 0.20 TCGA-33-AASI-01 2 71160172 71160172 G A VAX2 Silent p.A237A 0.21 TCGA-33-AASI-01 2 73052929 73052929 G C EXOC6B Silent p.L37L 0.26 TCGA-33-AASI-01 2 74140752 74140752 G T ACTG2 Missense_Mutation p.G198C 0.28 deleterious_low_confidence(0.01) probably_damaging(0.957) TCGA-33-AASI-01 2 89309529 89309529 G T IGKV1-9 Missense_Mutation p.Q101K 0.14 tolerated(0.06) benign(0.019) TCGA-33-AASI-01 2 89476024 89476024 C G IGKV2-24 Missense_Mutation p.V50L 0.22 tolerated(1) benign(0) TCGA-33-AASI-01 2 9463268 9463268 G T ASAP2 Missense_Mutation p.E163D 0.32 deleterious(0) probably_damaging(0.997) TCGA-33-AASI-01 2 98928813 98928813 G T VWA3B 3'UTR 0.28 TCGA-33-AASI-01 3 108107857 108107857 G A MYH15 Missense_Mutation p.A1852V 0.26 tolerated(1) possibly_damaging(0.676) TCGA-33-AASI-01 3 115560837 115560837 T A LSAMP Silent p.I258I 0.28 TCGA-33-AASI-01 3 119165981 119165981 C A TMEM39A Missense_Mutation p.M153I 0.22 tolerated(0.7) benign(0) TCGA-33-AASI-01 3 120347248 120347248 C A HGD Missense_Mutation p.R439S 0.16 tolerated(0.11) benign(0.001) TCGA-33-AASI-01 3 120347249 120347249 C A HGD Missense_Mutation p.R439M 0.16 deleterious(0.02) benign(0.03) TCGA-33-AASI-01 3 121134788 121134788 G A STXBP5L Missense_Mutation p.G1091R 0.20 deleterious(0.02) possibly_damaging(0.726) TCGA-33-AASI-01 3 130292831 130292831 C G COL6A6 Missense_Mutation p.F1003L 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-33-AASI-01 3 1337344 1337344 C G CNTN6 Missense_Mutation p.R172G 0.24 deleterious(0) probably_damaging(1) TCGA-33-AASI-01 3 134898745 134898745 G T EPHB1 Missense_Mutation p.E601D 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-33-AASI-01 3 137743518 137743518 C T CLDN18 Missense_Mutation p.A152V 0.20 tolerated(0.5) possibly_damaging(0.686) TCGA-33-AASI-01 3 137881201 137881201 C T DBR1 Missense_Mutation p.E389K 0.24 tolerated(0.2) benign(0.017) TCGA-33-AASI-01 3 141289842 141289842 G C RASA2 Missense_Mutation p.D318H 0.26 deleterious(0) probably_damaging(0.996) TCGA-33-AASI-01 3 142144104 142144104 G C XRN1 Missense_Mutation p.P196R 0.20 deleterious(0) probably_damaging(0.942) TCGA-33-AASI-01 3 147114230 147114230 G T ZIC4 Missense_Mutation p.Q83K 0.31 tolerated_low_confidence(0.73) possibly_damaging(0.761) TCGA-33-AASI-01 3 147128734 147128734 G T ZIC1 Nonsense_Mutation p.E279* 0.19 TCGA-33-AASI-01 3 154033028 154033028 T C DHX36 Missense_Mutation p.E137G 0.14 tolerated(0.21) benign(0.001) TCGA-33-AASI-01 3 155215160 155215160 C G PLCH1 Missense_Mutation p.D603H 0.14 deleterious(0) probably_damaging(0.998) TCGA-33-AASI-01 3 156763578 156763578 G C LEKR1 3'UTR 0.20 TCGA-33-AASI-01 3 158363975 158363975 G A GFM1 Missense_Mutation p.G86S 0.17 deleterious(0) probably_damaging(0.991) TCGA-33-AASI-01 3 164732911 164732912 - T SI Frame_Shift_Ins p.V1334Gfs*12 0.16 TCGA-33-AASI-01 3 169540007 169540007 G A LRRIQ4 Missense_Mutation p.D100N 0.39 deleterious(0.02) probably_damaging(1) TCGA-33-AASI-01 3 172098838 172098838 C A FNDC3B Missense_Mutation p.N1086K 0.44 tolerated(0.44) benign(0.001) TCGA-33-AASI-01 3 197402039 197402039 G A KIAA0226 Silent p.C923C 0.08 TCGA-33-AASI-01 3 197687069 197687069 G T LMLN 5'Flank 0.42 TCGA-33-AASI-01 3 39226630 39226630 G C XIRP1 Missense_Mutation p.T1436S 0.33 tolerated_low_confidence(0.17) benign(0.057) TCGA-33-AASI-01 3 46014675 46014675 C A FYCO1 Silent p.S148S 0.22 TCGA-33-AASI-01 3 47455849 47455849 C G SCAP Missense_Mutation p.D1139H 0.44 deleterious(0) probably_damaging(1) TCGA-33-AASI-01 3 53531203 53531203 G T CACNA1D Missense_Mutation p.R31I 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.563) TCGA-33-AASI-01 3 56330393 56330393 T A ERC2 Missense_Mutation p.Q243L 0.33 deleterious(0) probably_damaging(0.975) TCGA-33-AASI-01 3 77666776 77666776 G T ROBO2 Missense_Mutation p.G1152C 0.32 deleterious(0) probably_damaging(0.965) TCGA-33-AASI-01 3 93779867 93779867 G C DHFRL1 Nonsense_Mutation p.Y163* 0.26 TCGA-33-AASI-01 3 98109608 98109608 C A OR5K3 Silent p.A33A 0.21 TCGA-33-AASI-01 3 98110196 98110196 G T OR5K3 Missense_Mutation p.K229N 0.20 tolerated(0.12) benign(0.02) TCGA-33-AASI-01 4 106863510 106863510 A G NPNT Silent p.P300P 0.07 TCGA-33-AASI-01 4 107169451 107169451 T C TBCK Missense_Mutation p.T245A 0.19 tolerated(0.27) benign(0.004) TCGA-33-AASI-01 4 109670613 109670613 T C ETNPPL Silent p.V236V 0.27 TCGA-33-AASI-01 4 109735045 109735045 C A COL25A1 3'UTR 0.16 TCGA-33-AASI-01 4 109780840 109780840 T A COL25A1 Missense_Mutation p.Y431F 0.15 deleterious(0.03) benign(0.168) TCGA-33-AASI-01 4 121616391 121616391 G T PRDM5 Silent p.R590R 0.26 TCGA-33-AASI-01 4 122828538 122828538 C A TRPC3 Missense_Mutation p.M659I 0.22 deleterious(0.01) possibly_damaging(0.643) TCGA-33-AASI-01 4 122833208 122833208 G T TRPC3 Missense_Mutation p.A461E 0.30 tolerated(0.06) possibly_damaging(0.461) TCGA-33-AASI-01 4 123814177 123814177 C T NUDT6 Missense_Mutation p.D253N 0.21 tolerated(0.06) possibly_damaging(0.766) TCGA-33-AASI-01 4 134084409 134084409 G C PCDH10 Silent p.T1025T 0.24 TCGA-33-AASI-01 4 147561765 147561765 G A POU4F2 Silent p.K345K 0.27 TCGA-33-AASI-01 4 156618217 156618217 G T GUCY1A3 Silent p.R66R 0.19 TCGA-33-AASI-01 4 156629413 156629413 G C GUCY1A3 Missense_Mutation p.E115Q 0.16 tolerated(0.66) possibly_damaging(0.648) TCGA-33-AASI-01 4 166388984 166388984 A G CPE Missense_Mutation p.K217E 0.39 tolerated(0.45) benign(0.035) TCGA-33-AASI-01 4 167983654 167983654 G A SPOCK3 Missense_Mutation p.P78L 0.32 tolerated(0.06) benign(0.271) TCGA-33-AASI-01 4 177071017 177071017 G T WDR17 Missense_Mutation p.V677L 0.32 tolerated(0.37) probably_damaging(0.997) TCGA-33-AASI-01 4 178896990 178896990 G T LINC01098 Missense_Mutation p.D65Y 0.24 tolerated_low_confidence(1) probably_damaging(0.937) TCGA-33-AASI-01 4 187179367 187179367 G C KLKB1 3'UTR 0.33 TCGA-33-AASI-01 4 187531169 187531169 C A FAT1 Missense_Mutation p.G3285V 0.24 probably_damaging(1) TCGA-33-AASI-01 4 49030737 49030737 T A CWH43 Missense_Mutation p.L453Q 0.31 deleterious(0) probably_damaging(0.967) TCGA-33-AASI-01 4 52860880 52860880 C A LRRC66 Nonsense_Mutation p.E770* 0.31 TCGA-33-AASI-01 4 55956172 55956172 C A KDR Missense_Mutation p.G1048V 0.26 deleterious(0) probably_damaging(1) TCGA-33-AASI-01 4 65274861 65274861 C A TECRL Missense_Mutation p.R70M 0.26 deleterious(0.02) possibly_damaging(0.471) TCGA-33-AASI-01 4 68619574 68619578 AACCA - GNRHR Frame_Shift_Del p.M159Rfs*8 0.32 TCGA-33-AASI-01 4 85742471 85742471 A T WDFY3 Missense_Mutation p.F453I 0.29 deleterious(0.01) probably_damaging(0.963) TCGA-33-AASI-01 4 85771105 85771105 G A WDFY3 Missense_Mutation p.S85L 0.27 deleterious(0) probably_damaging(0.98) TCGA-33-AASI-01 4 8588905 8588905 C A GPR78 Missense_Mutation p.Q303K 0.42 tolerated(1) benign(0.006) TCGA-33-AASI-01 4 90856148 90856148 C A MMRN1 Silent p.A439A 0.27 TCGA-33-AASI-01 4 95220580 95220580 G A HPGDS 3'UTR 0.24 TCGA-33-AASI-01 5 101755603 101755603 T A SLCO6A1 Missense_Mutation p.I467L 0.09 tolerated(0.22) benign(0.065) TCGA-33-AASI-01 5 10286609 10286609 C G CMBL Splice_Site p.X108_splice 0.13 TCGA-33-AASI-01 5 137219261 137219261 T A MYOT Silent p.T335T 0.38 TCGA-33-AASI-01 5 13737500 13737500 C A DNAH5 Missense_Mutation p.Q3772H 0.33 possibly_damaging(0.522) TCGA-33-AASI-01 5 140182576 140182576 T A PCDHA3 Missense_Mutation p.D598E 0.37 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-33-AASI-01 5 140222691 140222691 C A PCDHA8 Silent p.R595R 0.23 TCGA-33-AASI-01 5 140812351 140812351 C T PCDHGA12 Silent p.L675L 0.29 TCGA-33-AASI-01 5 141000991 141000991 G C HDAC3 3'UTR 0.27 TCGA-33-AASI-01 5 145537190 145537190 C A LARS Missense_Mutation p.G281C 0.38 tolerated(0.09) possibly_damaging(0.743) TCGA-33-AASI-01 5 153144191 153144191 G T GRIA1 Missense_Mutation p.R684M 0.36 deleterious(0) probably_damaging(0.928) TCGA-33-AASI-01 5 158141187 158141187 C T EBF1 Missense_Mutation p.V377I 0.37 tolerated(0.5) benign(0.001) TCGA-33-AASI-01 5 161580365 161580365 C T GABRG2 Silent p.L513L 0.38 TCGA-33-AASI-01 5 176003110 176003110 C T CDHR2 Missense_Mutation p.T373I 0.39 tolerated(0.18) benign(0.103) TCGA-33-AASI-01 5 19591181 19591181 G T CDH18 Silent p.I328I 0.26 TCGA-33-AASI-01 5 2752835 2752835 C T C5orf38 Silent p.L100L 0.30 TCGA-33-AASI-01 5 31317927 31317927 A G CDH6 Missense_Mutation p.H593R 0.24 tolerated(0.71) benign(0) TCGA-33-AASI-01 5 33938062 33938062 G C RXFP3 Missense_Mutation p.R406P 0.31 deleterious(0) benign(0.115) TCGA-33-AASI-01 5 35910610 35910610 G T CAPSL Missense_Mutation p.T58N 0.20 tolerated(0.08) benign(0.013) TCGA-33-AASI-01 5 39377198 39377198 G C DAB2 Nonsense_Mutation p.S564* 0.26 TCGA-33-AASI-01 5 41153953 41153953 G T C6 Missense_Mutation p.S750Y 0.22 deleterious(0) probably_damaging(0.995) TCGA-33-AASI-01 5 71739868 71739868 G A ZNF366 Silent p.T650T 0.41 TCGA-33-AASI-01 5 73932103 73932103 A G ENC1 Missense_Mutation p.Y70H 0.28 deleterious(0) probably_damaging(0.999) TCGA-33-AASI-01 5 75596615 75596615 G T SV2C Missense_Mutation p.K566N 0.26 deleterious(0.01) possibly_damaging(0.87) TCGA-33-AASI-01 5 86679546 86679546 C T RASA1 Nonsense_Mutation p.R903* 0.45 TCGA-33-AASI-01 5 90074380 90074380 G A GPR98 Missense_Mutation p.R4268Q 0.54 benign(0.113) TCGA-33-AASI-01 5 93159904 93159904 T G FAM172A Missense_Mutation p.N286H 0.06 tolerated(0.24) benign(0.018) TCGA-33-AASI-01 6 111701318 111701318 C G REV3L Missense_Mutation p.G441R 0.34 deleterious(0.02) benign(0.033) TCGA-33-AASI-01 6 117609937 117609937 A G ROS1 Silent p.N2254N 0.40 TCGA-33-AASI-01 6 123130446 123130446 A T SMPDL3A Missense_Mutation p.T419S 0.33 tolerated(0.66) benign(0.017) TCGA-33-AASI-01 6 127637649 127637649 T A ECHDC1 Splice_Site p.X128_splice 0.36 TCGA-33-AASI-01 6 128304515 128304515 C A PTPRK Missense_Mutation p.A1093S 0.09 tolerated(0.2) probably_damaging(0.994) TCGA-33-AASI-01 6 162864484 162864484 C A PARK2 Missense_Mutation p.S10I 0.31 deleterious(0) probably_damaging(0.951) TCGA-33-AASI-01 6 167708154 167708154 G A UNC93A Silent p.V79V 0.25 TCGA-33-AASI-01 6 26124471 26124471 G A HIST1H2AC Missense_Mutation p.R4H 0.34 tolerated_low_confidence(0.07) benign(0.006) TCGA-33-AASI-01 6 26385482 26385482 G A BTN2A2 Missense_Mutation p.V112M 0.46 deleterious(0.03) possibly_damaging(0.73) TCGA-33-AASI-01 6 29454921 29454921 G C MAS1L Missense_Mutation p.C253W 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-33-AASI-01 6 31475008 31475008 G C MICB Missense_Mutation p.G275R 0.27 tolerated(0.06) probably_damaging(1) TCGA-33-AASI-01 6 31475009 31475009 G T MICB Missense_Mutation p.G275V 0.28 deleterious(0) probably_damaging(0.999) TCGA-33-AASI-01 6 38704973 38704973 G T DNAH8 Missense_Mutation p.G81V 0.21 benign(0.046) TCGA-33-AASI-01 6 44900405 44900405 T A SUPT3H Silent p.P310P 0.23 TCGA-33-AASI-01 6 52013753 52013753 G T MIR133B RNA 0.30 TCGA-33-AASI-01 6 55300532 55300532 A G HMGCLL1 Silent p.A347A 0.08 TCGA-33-AASI-01 6 56458520 56458520 T A DST Nonsense_Mutation p.R1600* 0.05 TCGA-33-AASI-01 6 66063368 66063368 C T EYS Nonsense_Mutation p.W481* 0.13 TCGA-33-AASI-01 6 7862548 7862548 C A BMP6 Missense_Mutation p.P341T 0.20 deleterious(0.01) benign(0.152) TCGA-33-AASI-01 6 85446765 85446765 G C TBX18 Missense_Mutation p.Q488E 0.33 deleterious(0.02) possibly_damaging(0.9) TCGA-33-AASI-01 7 100189512 100189512 G A FBXO24 Missense_Mutation p.R220H 0.33 tolerated_low_confidence(0.13) benign(0.031) TCGA-33-AASI-01 7 100677881 100677881 C G MUC17 Missense_Mutation p.L1062V 0.23 benign(0.004) TCGA-33-AASI-01 7 100679928 100679928 C G MUC17 Missense_Mutation p.P1744R 0.25 probably_damaging(0.946) TCGA-33-AASI-01 7 100683400 100683400 C A MUC17 Silent p.T2901T 0.19 TCGA-33-AASI-01 7 100780795 100780795 G T SERPINE1 3'UTR 0.24 TCGA-33-AASI-01 7 107399509 107399509 G C CBLL1 Missense_Mutation p.W454C 0.10 deleterious(0) probably_damaging(0.993) TCGA-33-AASI-01 7 113519352 113519352 C G PPP1R3A Missense_Mutation p.E599Q 0.19 tolerated(0.26) possibly_damaging(0.489) TCGA-33-AASI-01 7 122261648 122261648 C - CADPS2 Frame_Shift_Del p.E331Nfs*7 0.19 TCGA-33-AASI-01 7 122342173 122342173 C A RNF148 Missense_Mutation p.W211L 0.19 tolerated(0.65) benign(0.214) TCGA-33-AASI-01 7 123269396 123269396 C A ASB15 Missense_Mutation p.H450N 0.23 deleterious(0.01) possibly_damaging(0.854) TCGA-33-AASI-01 7 123269397 123269397 A T ASB15 Missense_Mutation p.H450L 0.23 deleterious(0) possibly_damaging(0.854) TCGA-33-AASI-01 7 128049534 128049534 T A IMPDH1 Nonsense_Mutation p.R51* 0.23 TCGA-33-AASI-01 7 128486925 128486925 C T FLNC Silent p.D1418D 0.24 TCGA-33-AASI-01 7 137148342 137148342 C T DGKI Nonsense_Mutation p.W884* 0.19 TCGA-33-AASI-01 7 142162052 142162052 C T TRBV6-6 Missense_Mutation p.D75N 0.21 tolerated(0.14) benign(0.008) TCGA-33-AASI-01 7 143047527 143047527 C T CLCN1 Silent p.D822D 0.26 TCGA-33-AASI-01 7 143270250 143270250 C A CTAGE15 Missense_Mutation p.T447N 0.30 deleterious(0) probably_damaging(0.972) TCGA-33-AASI-01 7 149523297 149523297 C T SSPO RNA 0.10 TCGA-33-AASI-01 7 150269874 150269874 C A GIMAP4 Missense_Mutation p.A239E 0.27 tolerated(1) benign(0.011) TCGA-33-AASI-01 7 150440225 150440225 C G GIMAP5 3'UTR 0.24 TCGA-33-AASI-01 7 150493562 150493562 A C TMEM176B Silent p.A32A 0.26 TCGA-33-AASI-01 7 154379800 154379800 G T DPP6 Intron 0.22 TCGA-33-AASI-01 7 154564611 154564611 C A DPP6 Silent p.T365T 0.21 TCGA-33-AASI-01 7 17379622 17379622 G A AHR Missense_Mutation p.E725K 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.611) TCGA-33-AASI-01 7 21516696 21516696 G T SP4 Splice_Site p.X560_splice 0.28 TCGA-33-AASI-01 7 2290712 2290712 G C NUDT1 3'UTR 0.15 TCGA-33-AASI-01 7 27185509 27185509 C T HOXA6 Missense_Mutation p.R157Q 0.30 deleterious(0) probably_damaging(0.968) TCGA-33-AASI-01 7 32110126 32110126 C A PDE1C Intron 0.27 TCGA-33-AASI-01 7 37780453 37780453 C T GPR141 Missense_Mutation p.S153F 0.27 tolerated(0.75) benign(0.015) TCGA-33-AASI-01 7 38393555 38393555 T A TRGV4 Missense_Mutation p.I39F 0.28 tolerated(0.18) benign(0.409) TCGA-33-AASI-01 7 42007299 42007299 C G GLI3 Missense_Mutation p.E776Q 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-33-AASI-01 7 44737809 44737809 G A OGDH Missense_Mutation p.A793T 0.27 deleterious(0) benign(0.415) TCGA-33-AASI-01 7 44801184 44801184 G A ZMIZ2 Silent p.L459L 0.29 TCGA-33-AASI-01 7 4874717 4874717 C A RADIL Missense_Mutation p.G313W 0.33 deleterious(0.01) possibly_damaging(0.447) TCGA-33-AASI-01 7 50097710 50097710 G A ZPBP Missense_Mutation p.S121F 0.15 deleterious(0) possibly_damaging(0.878) TCGA-33-AASI-01 7 57187652 57187652 C A ZNF479 Missense_Mutation p.E490D 0.21 deleterious(0.05) benign(0.001) TCGA-33-AASI-01 7 65429424 65429424 C T GUSB Missense_Mutation p.E559K 0.34 deleterious(0) probably_damaging(1) TCGA-33-AASI-01 7 70886012 70886012 T G WBSCR17 Missense_Mutation p.Y295D 0.31 deleterious(0.03) benign(0.019) TCGA-33-AASI-01 7 825308 825308 A T HEATR2 3'UTR 0.25 TCGA-33-AASI-01 7 82763964 82763964 G C PCLO Missense_Mutation p.P968A 0.30 unknown(0) TCGA-33-AASI-01 7 87810827 87810827 G - ADAM22 Frame_Shift_Del p.L807Sfs*88 0.28 TCGA-33-AASI-01 7 93555407 93555407 C G GNG11 Missense_Mutation p.S34C 0.27 deleterious(0) probably_damaging(0.998) TCGA-33-AASI-01 7 95726870 95726870 A G DYNC1I1 Missense_Mutation p.S635G 0.24 tolerated(0.39) benign(0.001) TCGA-33-AASI-01 7 96639276 96639276 C T DLX6 Missense_Mutation p.P267S 0.17 tolerated(0.52) benign(0.011) TCGA-33-AASI-01 7 98592209 98592209 G T TRRAP Splice_Site p.X3336_splice 0.23 TCGA-33-AASI-01 8 102555626 102555626 A G GRHL2 Missense_Mutation p.S60G 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-33-AASI-01 8 104076979 104076979 A T ATP6V1C1 Missense_Mutation p.E289V 0.23 deleterious(0) probably_damaging(0.999) TCGA-33-AASI-01 8 106815461 106815461 G T ZFPM2 Missense_Mutation p.D1051Y 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.629) TCGA-33-AASI-01 8 107695426 107695426 G T OXR1 Splice_Site p.X103_splice 0.21 TCGA-33-AASI-01 8 107773552 107773552 C G ABRA Missense_Mutation p.G287R 0.33 deleterious(0) probably_damaging(1) TCGA-33-AASI-01 8 110468501 110468501 T A PKHD1L1 Silent p.V2295V 0.17 TCGA-33-AASI-01 8 11189213 11189213 G T SLC35G5 Missense_Mutation p.G200C 0.33 deleterious(0) probably_damaging(1) TCGA-33-AASI-01 8 113253979 113253979 C A CSMD3 Missense_Mutation p.A3480S 0.32 tolerated(0.26) benign(0.004) TCGA-33-AASI-01 8 125551415 125551416 GG T NDUFB9 5'UTR 0.24 TCGA-33-AASI-01 8 13251189 13251189 C G DLC1 Missense_Mutation p.G396A 0.26 tolerated_low_confidence(0.19) benign(0.013) TCGA-33-AASI-01 8 133769494 133769494 C T TMEM71 Silent p.T29T 0.24 TCGA-33-AASI-01 8 134060141 134060141 C T SLA Missense_Mutation p.E136K 0.16 deleterious(0) possibly_damaging(0.851) TCGA-33-AASI-01 8 143846469 143846469 C A LYNX1 Missense_Mutation p.V82F 0.38 deleterious(0) possibly_damaging(0.8) TCGA-33-AASI-01 8 145637959 145637959 A T SLC39A4 Missense_Mutation p.L636Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-33-AASI-01 8 25708142 25708142 G C EBF2 Missense_Mutation p.A555G 0.36 tolerated_low_confidence(0.1) benign(0.055) TCGA-33-AASI-01 8 29025023 29025023 G C KIF13B Nonsense_Mutation p.S342* 0.27 TCGA-33-AASI-01 8 36780055 36780055 G T KCNU1 Missense_Mutation p.G882W 0.20 deleterious(0.04) benign(0.016) TCGA-33-AASI-01 8 37720528 37720528 A T RAB11FIP1 Missense_Mutation p.F1246Y 0.32 tolerated(0.12) possibly_damaging(0.856) TCGA-33-AASI-01 8 55541179 55541179 A T RP1 Missense_Mutation p.L1579F 0.16 tolerated(1) benign(0) TCGA-33-AASI-01 8 56015353 56015353 G T XKR4 Missense_Mutation p.R102M 0.12 tolerated(0.1) possibly_damaging(0.459) TCGA-33-AASI-01 8 63978649 63978649 C A TTPA Missense_Mutation p.W122C 0.14 deleterious(0) probably_damaging(1) TCGA-33-AASI-01 8 77776255 77776255 A T ZFHX4 Silent p.P3435P 0.19 TCGA-33-AASI-01 8 89131002 89131002 T C MMP16 Silent p.P266P 0.28 TCGA-33-AASI-01 8 92307853 92307853 C A SLC26A7 Missense_Mutation p.S133R 0.21 deleterious(0.01) possibly_damaging(0.649) TCGA-33-AASI-01 8 95897373 95897373 G T CCNE2 Silent p.L251L 0.22 TCGA-33-AASI-01 8 97156812 97156812 C A GDF6 Silent p.V449V 0.21 TCGA-33-AASI-01 8 97270794 97270794 G A MTERFD1 Missense_Mutation p.S42F 0.32 tolerated_low_confidence(0.78) benign(0.006) TCGA-33-AASI-01 9 100075626 100075626 A C CCDC180 Missense_Mutation p.K197T 0.45 tolerated(0.31) benign(0.037) TCGA-33-AASI-01 9 130742440 130742440 C A FAM102A 5'UTR 0.34 TCGA-33-AASI-01 9 139982587 139982587 C G MAN1B1 Missense_Mutation p.L94V 0.37 tolerated(0.58) benign(0.003) TCGA-33-AASI-01 9 32633466 32633466 C A TAF1L Missense_Mutation p.E704D 0.34 deleterious(0) probably_damaging(0.998) TCGA-33-AASI-01 9 5185350 5185350 T A INSL6 Missense_Mutation p.T85S 0.31 tolerated(0.28) possibly_damaging(0.874) TCGA-33-AASI-01 X 128709181 128709181 G A OCRL Missense_Mutation p.R556K 0.44 tolerated(1) probably_damaging(0.988) TCGA-33-AASI-01 X 135585069 135585069 G T HTATSF1 Missense_Mutation p.D235Y 0.28 deleterious(0.03) probably_damaging(0.921) TCGA-33-AASI-01 X 140994568 140994568 C A MAGEC1 Missense_Mutation p.Q460K 0.26 deleterious_low_confidence(0.03) benign(0.042) TCGA-33-AASI-01 X 142803759 142803759 C A SPANXN2 Nonsense_Mutation p.E2* 0.34 TCGA-33-AASI-01 X 14868686 14868686 C A FANCB Missense_Mutation p.W479C 0.28 deleterious(0) probably_damaging(1) TCGA-33-AASI-01 X 153038795 153038795 C T PLXNB3 Missense_Mutation p.A1029V 0.28 tolerated(0.08) benign(0.096) TCGA-33-AASI-01 X 18690168 18690168 G T RS1 Silent p.G7G 0.20 TCGA-33-AASI-01 X 19449572 19449572 C A MAP3K15 Missense_Mutation p.D384Y 0.11 deleterious(0) probably_damaging(0.988) TCGA-33-AASI-01 X 34962462 34962465 CTTC - FAM47B Frame_Shift_Del p.A505Efs*3 0.17 TCGA-33-AASI-01 X 34962662 34962662 C A FAM47B Missense_Mutation p.P572T 0.31 tolerated(0.26) benign(0.069) TCGA-33-AASI-01 X 37027160 37027160 C A FAM47C Missense_Mutation p.P226H 0.32 deleterious(0.03) probably_damaging(0.987) TCGA-33-AASI-01 X 38664669 38664669 T C MID1IP1 Missense_Mutation p.V157A 0.19 deleterious(0) probably_damaging(0.993) TCGA-33-AASI-01 X 54044211 54044211 C T PHF8 Missense_Mutation p.V149M 0.10 deleterious(0.05) probably_damaging(0.99) TCGA-33-AASI-01 X 54800585 54800585 G T ITIH6 Missense_Mutation p.P278T 0.14 deleterious(0.01) possibly_damaging(0.632) TCGA-33-AASI-01 X 70349933 70349933 G A MED12 Missense_Mutation p.D1306N 0.47 benign(0.157) TCGA-33-AASI-01 X 76938183 76938183 G T ATRX Missense_Mutation p.H855Q 0.34 benign(0) TCGA-33-AASJ-01 10 104183193 104183193 C T CUEDC2 Missense_Mutation p.R285H 0.61 deleterious(0) probably_damaging(0.991) TCGA-33-AASJ-01 10 120095749 120095749 G C FAM204A Nonsense_Mutation p.S60* 0.21 TCGA-33-AASJ-01 10 135440263 135440263 A G FRG2B 5'UTR 0.07 TCGA-33-AASJ-01 10 37418897 37418897 G A ANKRD30A Missense_Mutation p.D44N 0.12 tolerated(1) benign(0.339) TCGA-33-AASJ-01 10 63519875 63519875 G C C10orf107 Missense_Mutation p.G116A 0.10 deleterious(0) probably_damaging(0.997) TCGA-33-AASJ-01 10 7285545 7285546 - T SFMBT2 Frame_Shift_Ins p.N365Kfs*51 0.16 TCGA-33-AASJ-01 11 1017861 1017861 G C MUC6 Nonsense_Mutation p.S1647* 0.04 TCGA-33-AASJ-01 11 12315759 12315759 C T MICALCL Nonsense_Mutation p.R261* 0.39 TCGA-33-AASJ-01 11 128781930 128781930 G A KCNJ5 Silent p.Q254Q 0.31 TCGA-33-AASJ-01 11 133714191 133714191 C T SPATA19 Silent p.Q103Q 0.21 TCGA-33-AASJ-01 11 134151332 134151332 G C GLB1L3 Missense_Mutation p.D142H 0.16 deleterious(0) probably_damaging(0.986) TCGA-33-AASJ-01 11 36614675 36614675 C G RAG2 Missense_Mutation p.L348F 0.23 tolerated(0.05) probably_damaging(0.999) TCGA-33-AASJ-01 11 45925687 45925687 C T MAPK8IP1 Silent p.V547V 0.25 TCGA-33-AASJ-01 11 552227 552227 C T LRRC56 Silent p.G392G 0.13 TCGA-33-AASJ-01 11 55340474 55340474 G T OR4C16 Nonsense_Mutation p.E291* 0.30 TCGA-33-AASJ-01 11 65486656 65486656 G A KAT5 3'UTR 0.24 TCGA-33-AASJ-01 11 66287093 66287093 C T BBS1 Silent p.V199V 0.65 TCGA-33-AASJ-01 11 88338063 88338063 G A GRM5 Missense_Mutation p.S406L 0.17 deleterious(0) possibly_damaging(0.756) TCGA-33-AASJ-01 12 121205204 121205204 G A SPPL3 Silent p.Y322Y 0.09 TCGA-33-AASJ-01 12 41946514 41946514 C A PDZRN4 Nonsense_Mutation p.Y420* 0.38 TCGA-33-AASJ-01 12 44189523 44189523 G A TWF1 Silent p.D313D 0.07 TCGA-33-AASJ-01 12 4554547 4554547 C T FGF6 Missense_Mutation p.G64R 0.08 tolerated(0.7) benign(0.025) TCGA-33-AASJ-01 12 49233884 49233884 G A DDX23 Missense_Mutation p.S109F 0.15 deleterious_low_confidence(0.01) benign(0.184) TCGA-33-AASJ-01 12 57586964 57586964 A T LRP1 Missense_Mutation p.N2521Y 0.35 possibly_damaging(0.851) TCGA-33-AASJ-01 12 78444590 78444590 G T NAV3 Nonsense_Mutation p.G727* 0.30 TCGA-33-AASJ-01 12 78444591 78444591 G C NAV3 Missense_Mutation p.G727A 0.29 tolerated(0.27) probably_damaging(1) TCGA-33-AASJ-01 12 82147899 82147899 C G PPFIA2 Silent p.L34L 0.17 TCGA-33-AASJ-01 12 99020468 99020468 G C IKBIP Missense_Mutation p.S125C 0.41 deleterious(0) probably_damaging(0.937) TCGA-33-AASJ-01 14 102482819 102482819 A T DYNC1H1 Missense_Mutation p.D2536V 0.66 probably_damaging(1) TCGA-33-AASJ-01 14 103059504 103059504 C T RCOR1 Missense_Mutation p.S94L 0.50 tolerated(0.07) possibly_damaging(0.519) TCGA-33-AASJ-01 14 19378052 19378052 G A OR11H12 Silent p.G153G 0.17 TCGA-33-AASJ-01 14 22362781 22362781 C A TRAV8-4 Missense_Mutation p.T14N 0.22 tolerated(0.32) benign(0.257) TCGA-33-AASJ-01 14 55241730 55241730 G A SAMD4A Silent p.Q598Q 0.54 TCGA-33-AASJ-01 14 59113414 59113414 G A DACT1 Silent p.L691L 0.19 TCGA-33-AASJ-01 14 59965549 59965549 G T JKAMP Missense_Mutation p.R188L 0.30 deleterious(0.02) possibly_damaging(0.713) TCGA-33-AASJ-01 14 60212592 60212592 G A RTN1 Silent p.I283I 0.27 TCGA-33-AASJ-01 14 60619887 60619887 G C DHRS7 Missense_Mutation p.L135V 0.27 deleterious(0) probably_damaging(1) TCGA-33-AASJ-01 14 60977802 60977802 A T SIX6 Missense_Mutation p.R191S 0.26 tolerated(0.07) benign(0.01) TCGA-33-AASJ-01 14 88934480 88934480 C A PTPN21 3'UTR 0.05 TCGA-33-AASJ-01 15 23932023 23932023 C G NDN Missense_Mutation p.Q114H 0.28 deleterious(0) probably_damaging(0.999) TCGA-33-AASJ-01 15 40589029 40589029 A G PLCB2 Silent p.S468S 0.36 TCGA-33-AASJ-01 15 41228746 41228746 G T DLL4 Missense_Mutation p.V521L 0.22 tolerated(0.65) benign(0.002) TCGA-33-AASJ-01 15 48053572 48053572 G C SEMA6D Missense_Mutation p.E131Q 0.19 tolerated(0.15) probably_damaging(0.938) TCGA-33-AASJ-01 15 48058082 48058082 G C SEMA6D Missense_Mutation p.E482Q 0.30 tolerated(0.59) benign(0.072) TCGA-33-AASJ-01 15 62939621 62939621 G T TLN2 Missense_Mutation p.V38L 0.30 tolerated(0.29) benign(0.013) TCGA-33-AASJ-01 15 79750037 79750037 C A KIAA1024 Missense_Mutation p.D516E 0.19 tolerated(0.11) benign(0.143) TCGA-33-AASJ-01 15 92706342 92706342 G C SLCO3A1 Missense_Mutation p.E704Q 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.617) TCGA-33-AASJ-01 16 20634741 20634741 T C ACSM1 3'UTR 0.75 TCGA-33-AASJ-01 16 2836544 2836544 C T PRSS33 Missense_Mutation p.R2K 0.26 tolerated(0.26) benign(0.001) TCGA-33-AASJ-01 16 52502432 52502432 C A TOX3 Missense_Mutation p.A48S 0.50 tolerated(1) benign(0.117) TCGA-33-AASJ-01 16 67100648 67100648 C T CBFB Missense_Mutation p.L116F 0.16 deleterious(0.01) probably_damaging(0.932) TCGA-33-AASJ-01 16 69689635 69689635 G C NFAT5 Missense_Mutation p.E377Q 0.06 probably_damaging(0.993) TCGA-33-AASJ-01 16 77465226 77465226 G A ADAMTS18 Missense_Mutation p.S154F 0.32 deleterious(0.02) benign(0.013) TCGA-33-AASJ-01 17 27905750 27905750 G A GIT1 Missense_Mutation p.A279V 0.21 tolerated(0.09) probably_damaging(0.999) TCGA-33-AASJ-01 17 43037581 43037581 G C C1QL1 Missense_Mutation p.S251C 0.30 deleterious(0) probably_damaging(0.996) TCGA-33-AASJ-01 17 59560859 59560859 G A TBX4 Silent p.E540E 0.26 TCGA-33-AASJ-01 17 65191571 65191571 C T HELZ Missense_Mutation p.A149T 0.30 tolerated(0.25) benign(0.004) TCGA-33-AASJ-01 17 7576928 7576928 T C TP53 Splice_Site p.X307_splice 0.56 TCGA-33-AASJ-01 17 78319251 78319251 G C RNF213 Missense_Mutation p.K2372N 0.13 benign(0.047) TCGA-33-AASJ-01 17 79620216 79620216 G T PDE6G Missense_Mutation p.S40R 0.45 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-33-AASJ-01 17 8215796 8215796 C T ARHGEF15 Missense_Mutation p.P147S 0.47 tolerated_low_confidence(0.2) benign(0.014) TCGA-33-AASJ-01 18 55233780 55233780 A G FECH Missense_Mutation p.V172A 0.35 tolerated(1) benign(0.339) TCGA-33-AASJ-01 18 74778320 74778320 C T MBP Missense_Mutation p.E25K 0.49 deleterious_low_confidence(0.01) benign(0.12) TCGA-33-AASJ-01 19 10610154 10610154 C T KEAP1 Missense_Mutation p.G186S 0.11 deleterious(0) probably_damaging(1) TCGA-33-AASJ-01 19 1299932 1299932 C T EFNA2 Silent p.L210L 0.32 TCGA-33-AASJ-01 19 16772042 16772042 C G TMEM38A Missense_Mutation p.S5W 0.17 deleterious(0.01) unknown(0) TCGA-33-AASJ-01 19 3275967 3275967 G C CELF5 Missense_Mutation p.D170H 0.20 deleterious(0) possibly_damaging(0.871) TCGA-33-AASJ-01 19 35837559 35837559 C G CD22 Missense_Mutation p.Q835E 0.20 tolerated(0.63) benign(0.015) TCGA-33-AASJ-01 19 38976392 38976392 C T RYR1 Silent p.D1699D 0.21 TCGA-33-AASJ-01 19 42730218 42730218 G A ZNF526 Missense_Mutation p.A555T 0.27 tolerated(0.28) probably_damaging(0.996) TCGA-33-AASJ-01 19 48382337 48382337 C G SULT2A1 Missense_Mutation p.E175Q 0.16 tolerated(0.08) possibly_damaging(0.462) TCGA-33-AASJ-01 19 51451915 51451915 G T KLK5 Missense_Mutation p.A236E 0.29 tolerated(0.92) benign(0.082) TCGA-33-AASJ-01 19 54745909 54745909 C T LILRA6 Silent p.V116V 0.08 TCGA-33-AASJ-01 19 56243422 56243422 G A NLRP9 Missense_Mutation p.T592M 0.20 deleterious(0.02) possibly_damaging(0.655) TCGA-33-AASJ-01 19 56953378 56953378 G T ZNF667 Missense_Mutation p.P329H 0.53 deleterious(0) possibly_damaging(0.866) TCGA-33-AASJ-01 19 756949 756949 G T MISP Translation_Start_Site p.M1? 0.46 deleterious(0.04) possibly_damaging(0.58) TCGA-33-AASJ-01 19 7691126 7691126 C G XAB2 Missense_Mutation p.E185Q 0.34 deleterious(0.02) benign(0.064) TCGA-33-AASJ-01 19 7810670 7810670 G C CD209 Missense_Mutation p.P161R 0.29 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-33-AASJ-01 1 111825073 111825073 G T CHIAP2 RNA 0.25 TCGA-33-AASJ-01 1 112031380 112031380 C T ADORA3 Missense_Mutation p.A242T 0.18 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-33-AASJ-01 1 115275275 115275275 T C CSDE1 Missense_Mutation p.I380V 0.19 deleterious(0) possibly_damaging(0.77) TCGA-33-AASJ-01 1 151258908 151258908 A T ZNF687 Silent p.V47V 0.43 TCGA-33-AASJ-01 1 153635190 153635190 C T ILF2 Missense_Mutation p.D335N 0.43 tolerated(0.68) benign(0.058) TCGA-33-AASJ-01 1 153636551 153636551 C G ILF2 Missense_Mutation p.E238Q 0.38 tolerated(0.52) benign(0.03) TCGA-33-AASJ-01 1 162740284 162740284 C G DDR2 Missense_Mutation p.P496A 0.36 tolerated(0.44) benign(0.001) TCGA-33-AASJ-01 1 180034372 180034372 G A CEP350 Silent p.Q1844Q 0.22 TCGA-33-AASJ-01 1 183196727 183196727 G A LAMC2 Missense_Mutation p.D455N 0.23 tolerated(0.34) benign(0.288) TCGA-33-AASJ-01 1 201777556 201777556 C T NAV1 Missense_Mutation p.H1286Y 0.42 tolerated(1) benign(0.036) TCGA-33-AASJ-01 1 216741411 216741411 G A ESRRG Missense_Mutation p.R212W 0.20 deleterious(0) probably_damaging(0.993) TCGA-33-AASJ-01 1 22157806 22157806 C A HSPG2 Nonsense_Mutation p.E3822* 0.25 TCGA-33-AASJ-01 1 22166387 22166387 G C HSPG2 Missense_Mutation p.Q3213E 0.15 benign(0.004) TCGA-33-AASJ-01 1 22987644 22987644 C G C1QB Missense_Mutation p.S176C 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-33-AASJ-01 1 23885716 23885716 C T ID3 Missense_Mutation p.E68K 0.21 deleterious(0) probably_damaging(0.994) TCGA-33-AASJ-01 1 23885741 23885741 C G ID3 Silent p.P59P 0.21 TCGA-33-AASJ-01 1 23885831 23885831 C T ID3 Silent p.G29G 0.29 TCGA-33-AASJ-01 1 248525607 248525607 C T OR2T4 Missense_Mutation p.P242L 0.16 deleterious(0) possibly_damaging(0.651) TCGA-33-AASJ-01 1 25558681 25558681 C T SYF2 Missense_Mutation p.E16K 0.21 tolerated_low_confidence(0.23) possibly_damaging(0.636) TCGA-33-AASJ-01 1 54610474 54610474 C A CDCP2 Missense_Mutation p.G31V 0.15 deleterious(0) probably_damaging(0.999) TCGA-33-AASJ-01 1 54722819 54722819 G A SSBP3 Missense_Mutation p.P163L 0.28 deleterious(0.02) benign(0.088) TCGA-33-AASJ-01 1 55224082 55224082 G A PARS2 Silent p.I251I 0.27 TCGA-33-AASJ-01 1 70509643 70509643 G A LRRC7 Missense_Mutation p.A1288T 0.40 tolerated(0.1) benign(0.22) TCGA-33-AASJ-01 1 82409093 82409093 G A LPHN2 Missense_Mutation p.E280K 0.12 deleterious(0.04) possibly_damaging(0.517) TCGA-33-AASJ-01 1 92498072 92498072 T A EPHX4 Nonsense_Mutation p.L81* 0.17 TCGA-33-AASJ-01 20 17608277 17608277 C T RRBP1 Missense_Mutation p.E501K 0.15 tolerated(0.43) possibly_damaging(0.502) TCGA-33-AASJ-01 20 7915196 7915196 A T HAO1 Missense_Mutation p.I75K 0.21 deleterious(0) possibly_damaging(0.864) TCGA-33-AASJ-01 20 9520192 9520192 C G PAK7 Missense_Mutation p.E693Q 0.16 deleterious(0.03) probably_damaging(0.993) TCGA-33-AASJ-01 21 33076215 33076215 C T SCAF4 Missense_Mutation p.G62R 0.17 probably_damaging(1) TCGA-33-AASJ-01 21 34635682 34635682 A G IFNAR2 Silent p.E475E 0.46 TCGA-33-AASJ-01 21 38441914 38441914 G A PIGP Silent p.L55L 0.14 TCGA-33-AASJ-01 22 30375017 30375017 C T MTMR3 Silent p.I62I 0.38 TCGA-33-AASJ-01 22 50682519 50682519 G C TUBGCP6 Missense_Mutation p.Q124E 0.07 tolerated(0.22) benign(0.079) TCGA-33-AASJ-01 22 50718058 50718058 C A PLXNB2 Splice_Site p.X1463_splice 0.68 TCGA-33-AASJ-01 2 121684962 121684962 C G GLI2 Missense_Mutation p.F58L 0.24 deleterious(0.03) benign(0.002) TCGA-33-AASJ-01 2 136680378 136680378 C G DARS Missense_Mutation p.E263Q 0.06 deleterious(0.05) possibly_damaging(0.733) TCGA-33-AASJ-01 2 158115967 158115967 G T GALNT5 Missense_Mutation p.R458I 0.21 deleterious(0) possibly_damaging(0.864) TCGA-33-AASJ-01 2 179432610 179432610 A G TTN Silent p.Y26083Y 0.11 TCGA-33-AASJ-01 2 179441942 179441960 TACATCAAGGACTGTTACC - TTN Frame_Shift_Del p.K23034Nfs*78 0.67 TCGA-33-AASJ-01 2 180815292 180815292 G A CWC22 Missense_Mutation p.S696F 0.17 deleterious_low_confidence(0) possibly_damaging(0.542) TCGA-33-AASJ-01 2 197002227 197002227 G A STK17B Missense_Mutation p.R355C 0.10 deleterious(0) probably_damaging(0.996) TCGA-33-AASJ-01 2 205969239 205969239 G T PARD3B Splice_Site p.X198_splice 0.06 TCGA-33-AASJ-01 2 219612876 219612876 C T TTLL4 Silent p.T809T 0.17 TCGA-33-AASJ-01 2 220077753 220077753 T C ABCB6 Missense_Mutation p.M614V 0.38 tolerated(0.63) benign(0.015) TCGA-33-AASJ-01 2 238269804 238269804 T A COL6A3 Missense_Mutation p.E2057V 0.61 probably_damaging(0.91) TCGA-33-AASJ-01 2 29295703 29295703 C T C2orf71 Silent p.P475P 0.10 TCGA-33-AASJ-01 2 32475027 32475039 TGTGGATTCCACC - NLRC4 Frame_Shift_Del p.G632Wfs*37 0.23 TCGA-33-AASJ-01 2 32754719 32754719 C T BIRC6 Silent p.G3974G 0.26 TCGA-33-AASJ-01 2 48718248 48718248 C T PPP1R21 Missense_Mutation p.S513L 0.15 tolerated(0.1) possibly_damaging(0.582) TCGA-33-AASJ-01 2 62067177 62067177 G C FAM161A Nonsense_Mutation p.S321* 0.30 TCGA-33-AASJ-01 2 79350306 79350306 G C REG1A Missense_Mutation p.D156H 0.10 tolerated(0.11) benign(0.172) TCGA-33-AASJ-01 2 85786153 85786153 G A GGCX Missense_Mutation p.S87F 0.24 tolerated(0.62) benign(0.005) TCGA-33-AASJ-01 2 9645428 9645428 G C ADAM17 Missense_Mutation p.Q471E 0.16 tolerated(0.1) benign(0.001) TCGA-33-AASJ-01 3 10979955 10979955 C - SLC6A11 Frame_Shift_Del p.S591Afs*4 0.16 TCGA-33-AASJ-01 3 113378455 113378455 G C KIAA2018 Missense_Mutation p.Q692E 0.29 probably_damaging(0.977) TCGA-33-AASJ-01 3 118945866 118945866 G C B4GALT4 Missense_Mutation p.F92L 0.64 tolerated(0.09) probably_damaging(0.999) TCGA-33-AASJ-01 3 121377147 121377147 G T HCLS1 Silent p.T16T 0.37 TCGA-33-AASJ-01 3 12422834 12422834 G A PPARG Silent p.V108V 0.20 TCGA-33-AASJ-01 3 138739325 138739325 A G PRR23B Missense_Mutation p.I60T 0.09 deleterious(0) benign(0.252) TCGA-33-AASJ-01 3 142144156 142144156 G A XRN1 Missense_Mutation p.H179Y 0.11 deleterious(0) probably_damaging(1) TCGA-33-AASJ-01 3 147128158 147128158 G A ZIC1 Missense_Mutation p.G87S 0.18 tolerated(0.4) benign(0.004) TCGA-33-AASJ-01 3 148903101 148903101 G A CP Missense_Mutation p.A737V 0.20 deleterious(0.03) probably_damaging(0.981) TCGA-33-AASJ-01 3 149684098 149684098 G T PFN2 3'UTR 0.19 TCGA-33-AASJ-01 3 153909105 153909105 A G ARHGEF26 Silent p.V556V 0.12 TCGA-33-AASJ-01 3 160283015 160283015 C A KPNA4 Missense_Mutation p.G19V 0.13 deleterious(0) benign(0.35) TCGA-33-AASJ-01 3 16419600 16419600 C G RFTN1 Missense_Mutation p.A151P 0.32 deleterious(0.02) probably_damaging(0.991) TCGA-33-AASJ-01 3 169846755 169846755 G C PHC3 Nonsense_Mutation p.S502* 0.09 TCGA-33-AASJ-01 3 183858428 183858428 C T EIF2B5 Silent p.L356L 0.08 TCGA-33-AASJ-01 3 185783818 185783818 G A ETV5 Nonsense_Mutation p.Q232* 0.09 TCGA-33-AASJ-01 3 3133997 3133997 G C IL5RA Missense_Mutation p.S302C 0.24 tolerated(0.19) benign(0.02) TCGA-33-AASJ-01 3 3139598 3139598 G A IL5RA Missense_Mutation p.S222F 0.27 deleterious(0) benign(0.027) TCGA-33-AASJ-01 3 45879424 45879424 C T LZTFL1 Silent p.E41E 0.19 TCGA-33-AASJ-01 3 45879426 45879426 C T LZTFL1 Missense_Mutation p.E41K 0.19 tolerated(0.09) benign(0.09) TCGA-33-AASJ-01 3 46021263 46021263 G A FYCO1 Silent p.F74F 0.15 TCGA-33-AASJ-01 3 48454157 48454157 G A PLXNB1 Silent p.L1616L 0.19 TCGA-33-AASJ-01 3 49142162 49142162 G C QARS Missense_Mutation p.A2G 0.50 tolerated(0.12) possibly_damaging(0.666) TCGA-33-AASJ-01 3 9799072 9799072 A G CAMK1 3'UTR 0.29 TCGA-33-AASJ-01 4 153245512 153245512 T A FBXW7 Missense_Mutation p.D560V 0.78 deleterious(0) probably_damaging(1) TCGA-33-AASJ-01 4 154624498 154624498 C T TLR2 Missense_Mutation p.H147Y 0.53 tolerated(0.28) benign(0.003) TCGA-33-AASJ-01 4 175237336 175237336 G A CEP44 Silent p.E327E 0.69 TCGA-33-AASJ-01 4 177056345 177056345 A C WDR17 Missense_Mutation p.K419N 0.05 deleterious(0) probably_damaging(0.999) TCGA-33-AASJ-01 4 46053531 46053531 G T GABRG1 Silent p.A347A 0.51 TCGA-33-AASJ-01 4 57796838 57796838 C T REST Missense_Mutation p.S605F 0.43 deleterious(0.03) benign(0.11) TCGA-33-AASJ-01 4 76529135 76529135 G C CDKL2 Missense_Mutation p.L221V 0.67 deleterious(0) probably_damaging(0.997) TCGA-33-AASJ-01 4 85738636 85738636 G A WDFY3 Missense_Mutation p.S599F 0.33 deleterious(0) probably_damaging(0.947) TCGA-33-AASJ-01 5 10973571 10973571 C A CTNND2 Missense_Mutation p.W1224C 0.23 deleterious(0) probably_damaging(0.999) TCGA-33-AASJ-01 5 113740538 113740538 T A KCNN2 Missense_Mutation p.V329D 0.51 deleterious(0) probably_damaging(0.973) TCGA-33-AASJ-01 5 11411759 11411759 G C CTNND2 Missense_Mutation p.Q110E 0.22 tolerated(0.21) benign(0.148) TCGA-33-AASJ-01 5 127622448 127622448 G T FBN2 Missense_Mutation p.P2325H 0.44 deleterious(0.02) probably_damaging(0.976) TCGA-33-AASJ-01 5 149215863 149215863 A T PPARGC1B Silent p.T615T 0.57 TCGA-33-AASJ-01 5 157170864 157170864 G T LSM11 Missense_Mutation p.A36S 0.44 deleterious(0) possibly_damaging(0.739) TCGA-33-AASJ-01 5 176919524 176919524 T A PDLIM7 Intron 0.70 TCGA-33-AASJ-01 5 226082 226082 G A SDHA Missense_Mutation p.G181R 0.31 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-33-AASJ-01 5 36225651 36225651 G T NADK2 Missense_Mutation p.P185T 0.12 deleterious(0) possibly_damaging(0.851) TCGA-33-AASJ-01 5 454050 454050 C T EXOC3 Silent p.N310N 0.34 TCGA-33-AASJ-01 5 61789861 61789861 C T IPO11 Silent p.I540I 0.31 TCGA-33-AASJ-01 5 68670494 68670494 G A RAD17 Missense_Mutation p.E114K 0.46 deleterious(0) benign(0.132) TCGA-33-AASJ-01 5 96430417 96430417 C G LIX1 3'UTR 0.57 TCGA-33-AASJ-01 6 100868712 100868712 C A SIM1 Missense_Mutation p.R374L 0.25 deleterious(0) possibly_damaging(0.866) TCGA-33-AASJ-01 6 102134192 102134192 G T GRIK2 Silent p.P305P 0.10 TCGA-33-AASJ-01 6 107391675 107391675 G A BEND3 Silent p.F240F 0.27 TCGA-33-AASJ-01 6 109983852 109983852 C T AK9 Missense_Mutation p.E116K 0.18 tolerated(0.31) probably_damaging(0.929) TCGA-33-AASJ-01 6 136904732 136904732 A G MAP3K5 Silent p.I1124I 0.06 TCGA-33-AASJ-01 6 146264514 146264514 T C SHPRH Missense_Mutation p.Q668R 0.17 tolerated(0.52) benign(0.005) TCGA-33-AASJ-01 6 151687966 151687966 A C ZBTB2 Missense_Mutation p.L79V 0.45 tolerated(0.05) probably_damaging(0.992) TCGA-33-AASJ-01 6 152485327 152485327 C T SYNE1 Missense_Mutation p.E7921K 0.19 probably_damaging(0.995) TCGA-33-AASJ-01 6 152712693 152712693 C G SYNE1 Missense_Mutation p.D2575H 0.27 possibly_damaging(0.682) TCGA-33-AASJ-01 6 154439836 154439836 G A OPRM1 Missense_Mutation p.E488K 0.34 deleterious_low_confidence(0.01) benign(0.058) TCGA-33-AASJ-01 6 157527628 157527628 G A ARID1B Missense_Mutation p.D1785N 0.26 probably_damaging(0.995) TCGA-33-AASJ-01 6 168276148 168276148 C T MLLT4 Missense_Mutation p.R238W 0.59 deleterious(0) possibly_damaging(0.843) TCGA-33-AASJ-01 6 168352831 168352831 G A MLLT4 Silent p.L1592L 0.29 TCGA-33-AASJ-01 6 25600819 25600819 G A LRRC16A Missense_Mutation p.E1133K 0.16 deleterious_low_confidence(0.04) possibly_damaging(0.507) TCGA-33-AASJ-01 6 25600857 25600857 G C LRRC16A Silent p.R1145R 0.10 TCGA-33-AASJ-01 6 25778226 25778226 T A SLC17A4 Silent p.A447A 0.21 TCGA-33-AASJ-01 6 26184252 26184252 G A HIST1H2BE Missense_Mutation p.E77K 0.22 deleterious_low_confidence(0.04) possibly_damaging(0.849) TCGA-33-AASJ-01 6 31903717 31903717 C T C2 Silent p.I289I 0.17 TCGA-33-AASJ-01 6 32190781 32190781 C A NOTCH4 Splice_Site p.X52_splice 0.48 TCGA-33-AASJ-01 6 41129143 41129143 G T TREM2 Silent p.A83A 0.50 TCGA-33-AASJ-01 6 78172856 78172856 C T HTR1B Missense_Mutation p.A89T 0.25 tolerated(0.07) possibly_damaging(0.788) TCGA-33-AASJ-01 6 87969556 87969556 A G ZNF292 Missense_Mutation p.N2070S 0.16 tolerated(0.92) benign(0.001) TCGA-33-AASJ-01 6 99849164 99849164 C G PNISR Missense_Mutation p.R557T 0.18 deleterious_low_confidence(0.01) benign(0.402) TCGA-33-AASJ-01 7 1012853 1012853 T C COX19 Missense_Mutation p.K53R 0.15 tolerated(0.52) benign(0.03) TCGA-33-AASJ-01 7 103194277 103194277 A T RELN Silent p.G1933G 0.31 TCGA-33-AASJ-01 7 107615514 107615514 G A LAMB1 Missense_Mutation p.P467S 0.40 tolerated(0.3) probably_damaging(0.973) TCGA-33-AASJ-01 7 116593728 116593730 ACG - ST7 In_Frame_Del p.D46del 0.09 TCGA-33-AASJ-01 7 122763276 122763276 G T SLC13A1 Nonsense_Mutation p.Y418* 0.46 TCGA-33-AASJ-01 7 124404880 124404880 G T GPR37 Missense_Mutation p.R51S 0.11 deleterious_low_confidence(0.05) benign(0.004) TCGA-33-AASJ-01 7 129311346 129311346 C G NRF1 Missense_Mutation p.P101A 0.08 deleterious(0) probably_damaging(0.999) TCGA-33-AASJ-01 7 133689707 133689707 G A EXOC4 Silent p.G797G 0.24 TCGA-33-AASJ-01 7 5112814 5112814 G A RBAK-RBAKDN 3'UTR 0.15 TCGA-33-AASJ-01 8 139209883 139209883 G T FAM135B Nonsense_Mutation p.C233* 0.18 TCGA-33-AASJ-01 8 144990894 144990894 C A PLEC Missense_Mutation p.K4502N 0.22 probably_damaging(0.999) TCGA-33-AASJ-01 8 27362507 27362507 G A EPHX2 Silent p.L127L 0.09 TCGA-33-AASJ-01 8 2886843 2886843 C G CSMD1 Missense_Mutation p.R2618P 0.41 benign(0.423) TCGA-33-AASJ-01 8 59515852 59515852 T C NSMAF Missense_Mutation p.N352S 0.68 tolerated(1) benign(0.053) TCGA-33-AASJ-01 8 98078290 98078290 A T CPQ Missense_Mutation p.L369F 0.24 tolerated(0.05) benign(0.195) TCGA-33-AASJ-01 9 120470942 120470942 C T TLR4 Silent p.P65P 0.29 TCGA-33-AASJ-01 9 134314420 134314420 G T PRRC2B Silent p.L147L 0.27 TCGA-33-AASJ-01 9 139008584 139008584 G A C9orf69 Missense_Mutation p.R55C 0.17 deleterious(0.03) probably_damaging(0.993) TCGA-33-AASJ-01 9 139115917 139115917 C G QSOX2 Missense_Mutation p.D174H 0.31 deleterious(0) probably_damaging(0.972) TCGA-33-AASJ-01 9 139929114 139929114 A C C9orf139 Missense_Mutation p.S61R 0.32 tolerated_low_confidence(0.1) possibly_damaging(0.504) TCGA-33-AASJ-01 9 140137199 140137199 G C TUBB4B Missense_Mutation p.D177H 0.24 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-33-AASJ-01 9 32633059 32633059 C A TAF1L Missense_Mutation p.R840L 0.28 tolerated(0.1) possibly_damaging(0.818) TCGA-33-AASJ-01 9 5233848 5233848 G C INSL4 Missense_Mutation p.D131H 0.23 tolerated(0.15) possibly_damaging(0.866) TCGA-33-AASJ-01 9 5921277 5921277 C G KIAA2026 Silent p.V1573V 0.25 TCGA-33-AASJ-01 9 72006586 72006586 C T FAM189A2 Silent p.L407L 0.32 TCGA-33-AASJ-01 9 77376657 77376657 C T TRPM6 Silent p.R1580R 0.13 TCGA-33-AASJ-01 9 91793278 91793278 T A SHC3 Missense_Mutation p.K33M 0.32 deleterious(0.01) probably_damaging(0.926) TCGA-33-AASJ-01 9 95480103 95480105 GAG - BICD2 In_Frame_Del p.S745del 0.13 TCGA-33-AASJ-01 9 98690380 98690380 A G ERCC6L2 Missense_Mutation p.N529S 0.16 tolerated(0.24) benign(0.003) TCGA-33-AASJ-01 X 117809970 117809970 G C DOCK11 Missense_Mutation p.K1757N 0.86 deleterious(0) benign(0.212) TCGA-33-AASJ-01 X 119512550 119512550 C A ATP1B4 Missense_Mutation p.D278E 0.70 tolerated(0.42) benign(0.099) TCGA-33-AASJ-01 X 120008837 120008837 C A CT47B1 Nonsense_Mutation p.E230* 0.79 TCGA-33-AASJ-01 X 13801526 13801526 A T GPM6B Silent p.G161G 0.56 TCGA-33-AASJ-01 X 40556344 40556344 G A MED14 Missense_Mutation p.H528Y 0.54 deleterious(0) probably_damaging(0.998) TCGA-33-AASJ-01 X 85218786 85218786 T C CHM Missense_Mutation p.M196V 0.52 tolerated(0.31) benign(0.002) TCGA-33-AASL-01 10 103294506 103294506 A T BTRC Missense_Mutation p.M396L 0.19 tolerated(0.17) benign(0.192) TCGA-33-AASL-01 10 121184530 121184530 G A GRK5 Missense_Mutation p.E156K 0.21 tolerated(0.6) benign(0.124) TCGA-33-AASL-01 10 15714730 15714730 C A ITGA8 Missense_Mutation p.S232I 0.14 tolerated(0.11) benign(0.027) TCGA-33-AASL-01 10 3158972 3158972 A T PFKP Missense_Mutation p.K459I 0.11 deleterious(0.04) benign(0.139) TCGA-33-AASL-01 10 38241777 38241777 G C ZNF25 Missense_Mutation p.L217V 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-33-AASL-01 10 50902015 50902015 C G C10orf53 Intron 0.33 TCGA-33-AASL-01 10 70243288 70243288 G C SLC25A16 Silent p.L300L 0.12 TCGA-33-AASL-01 10 70546393 70546393 G C CCAR1 Missense_Mutation p.E942Q 0.18 deleterious(0.01) unknown(0) TCGA-33-AASL-01 10 70775758 70775758 G A KIAA1279 Missense_Mutation p.M484I 0.14 tolerated(0.07) possibly_damaging(0.896) TCGA-33-AASL-01 10 73082608 73082608 G C SLC29A3 Missense_Mutation p.E33Q 0.24 tolerated_low_confidence(0.15) possibly_damaging(0.475) TCGA-33-AASL-01 10 87379714 87379714 G T GRID1 Nonsense_Mutation p.S757* 0.16 TCGA-33-AASL-01 11 118779242 118779242 G A BCL9L Missense_Mutation p.T50I 0.23 possibly_damaging(0.86) TCGA-33-AASL-01 11 123847637 123847637 G - OR10S1 Frame_Shift_Del p.C255Afs*39 0.25 TCGA-33-AASL-01 11 123886677 123886677 C A OR10G4 Silent p.T132T 0.18 TCGA-33-AASL-01 11 126126580 126126580 T C FAM118B Missense_Mutation p.L272P 0.28 tolerated(0.09) probably_damaging(1) TCGA-33-AASL-01 11 17190955 17190955 T A PIK3C2A Nonsense_Mutation p.K112* 0.21 TCGA-33-AASL-01 11 17452274 17452274 A T ABCC8 Intron 0.21 TCGA-33-AASL-01 11 18723232 18723232 C T TMEM86A Silent p.A133A 0.20 TCGA-33-AASL-01 11 31128426 31128426 C G DCDC1 Missense_Mutation p.D557H 0.25 deleterious(0.01) probably_damaging(0.943) TCGA-33-AASL-01 11 32456329 32456329 G T WT1 Missense_Mutation p.A188E 0.19 deleterious_low_confidence(0.04) possibly_damaging(0.712) TCGA-33-AASL-01 11 35457547 35457547 C T PAMR1 Missense_Mutation p.E430K 0.30 tolerated(0.24) possibly_damaging(0.769) TCGA-33-AASL-01 11 48346886 48346886 T A OR4C3 Missense_Mutation p.L132M 0.09 deleterious(0) possibly_damaging(0.882) TCGA-33-AASL-01 11 48511082 48511082 C T OR4A47 Silent p.V246V 0.18 TCGA-33-AASL-01 11 49831633 49831633 A G RP11-707M1.1 RNA 0.24 TCGA-33-AASL-01 11 5080154 5080154 C G OR52E2 Missense_Mutation p.R235P 0.26 deleterious(0) probably_damaging(0.992) TCGA-33-AASL-01 11 5255330 5255330 A T HBD Missense_Mutation p.L69Q 0.19 deleterious(0) probably_damaging(0.998) TCGA-33-AASL-01 11 55032706 55032706 C A TRIM48 Missense_Mutation p.S125R 0.21 tolerated(0.16) benign(0.144) TCGA-33-AASL-01 11 55032708 55032708 T A TRIM48 Missense_Mutation p.L126Q 0.22 deleterious(0) probably_damaging(0.974) TCGA-33-AASL-01 11 55861213 55861213 C A OR8I2 Missense_Mutation p.L144M 0.14 tolerated(0.18) probably_damaging(0.968) TCGA-33-AASL-01 11 55872847 55872847 C T OR8H2 Missense_Mutation p.A110V 0.13 tolerated(0.19) benign(0.211) TCGA-33-AASL-01 11 55999988 55999988 G T OR5T2 Missense_Mutation p.A225D 0.18 deleterious(0.02) probably_damaging(0.97) TCGA-33-AASL-01 11 56058102 56058102 C A OR8H1 Missense_Mutation p.G146V 0.23 tolerated(0.19) benign(0.098) TCGA-33-AASL-01 11 56058118 56058118 A T OR8H1 Missense_Mutation p.C141S 0.24 tolerated(0.4) benign(0.008) TCGA-33-AASL-01 11 56310451 56310451 C G OR5M11 Missense_Mutation p.G95R 0.15 deleterious(0) probably_damaging(0.946) TCGA-33-AASL-01 11 57947737 57947737 C A OR9Q1 Missense_Mutation p.S274Y 0.17 deleterious(0) probably_damaging(0.988) TCGA-33-AASL-01 11 58916384 58916384 C G FAM111A Silent p.V13V 0.15 TCGA-33-AASL-01 11 58962763 58962763 A T DTX4 Missense_Mutation p.H486L 0.25 tolerated(0.12) benign(0.082) TCGA-33-AASL-01 11 59245448 59245448 C A OR4D10 Missense_Mutation p.H182Q 0.14 tolerated(0.06) benign(0) TCGA-33-AASL-01 11 65269031 65269031 G T MALAT1 RNA 0.26 TCGA-33-AASL-01 11 67410210 67410210 C A ACY3 Silent p.P315P 0.22 TCGA-33-AASL-01 11 6897965 6897965 T A OR10A4 Missense_Mutation p.F29L 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-33-AASL-01 11 71725124 71725124 T C NUMA1 Missense_Mutation p.Q1142R 0.15 benign(0.005) TCGA-33-AASL-01 12 10541382 10541382 G C KLRK1 Missense_Mutation p.R10G 0.22 tolerated(0.19) benign(0.042) TCGA-33-AASL-01 12 10786659 10786659 G C STYK1 Missense_Mutation p.I39M 0.21 deleterious(0) possibly_damaging(0.779) TCGA-33-AASL-01 12 113822035 113822035 C A PLBD2 Silent p.T361T 0.16 TCGA-33-AASL-01 12 123950402 123950402 G C SNRNP35 Silent p.V110V 0.18 TCGA-33-AASL-01 12 3921325 3921325 G A PARP11 Silent p.N327N 0.15 TCGA-33-AASL-01 12 41410693 41410693 A G CNTN1 Silent p.V798V 0.13 TCGA-33-AASL-01 12 46287560 46287560 A G ARID2 Intron 0.23 TCGA-33-AASL-01 12 52966448 52966448 G A KRT74 Missense_Mutation p.R159C 0.27 deleterious(0.02) benign(0.344) TCGA-33-AASL-01 12 56489457 56489457 A T ERBB3 Missense_Mutation p.H641L 0.33 tolerated(0.71) benign(0.004) TCGA-33-AASL-01 12 6669288 6669288 T A NOP2 Missense_Mutation p.N622Y 0.24 deleterious(0) probably_damaging(0.993) TCGA-33-AASL-01 12 70932005 70932005 G A PTPRB Missense_Mutation p.A1959V 0.19 tolerated(0.06) benign(0.021) TCGA-33-AASL-01 12 7585304 7585304 C T CD163L1 Silent p.V158V 0.21 TCGA-33-AASL-01 12 76741159 76741159 C G BBS10 Missense_Mutation p.M202I 0.12 tolerated(0.61) benign(0.007) TCGA-33-AASL-01 12 76780439 76780439 C T OSBPL8 Missense_Mutation p.A452T 0.23 deleterious(0) probably_damaging(0.988) TCGA-33-AASL-01 13 25274982 25274982 G T ATP12A Silent p.V607V 0.19 TCGA-33-AASL-01 13 29598821 29598821 A T MTUS2 Missense_Mutation p.T6S 0.29 tolerated_low_confidence(0.7) benign(0.011) TCGA-33-AASL-01 13 32721517 32721517 T C FRY Silent p.T426T 0.18 TCGA-33-AASL-01 13 43181126 43181126 G T TNFSF11 3'UTR 0.21 TCGA-33-AASL-01 14 23313640 23313640 G C MMP14 Missense_Mutation p.G358R 0.29 tolerated(0.09) probably_damaging(0.996) TCGA-33-AASL-01 14 30100109 30100109 C T PRKD1 Missense_Mutation p.G504E 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-33-AASL-01 14 50789465 50789465 A G ATP5S Intron 0.15 TCGA-33-AASL-01 14 52955124 52955124 T A TXNDC16 Missense_Mutation p.E355D 0.45 deleterious(0.02) benign(0.423) TCGA-33-AASL-01 14 63858543 63858543 G C PPP2R5E Missense_Mutation p.Q316E 0.31 deleterious(0.03) possibly_damaging(0.557) TCGA-33-AASL-01 14 70713476 70713476 T A ADAM21P1 RNA 0.38 TCGA-33-AASL-01 15 69238351 69238351 A G SPESP1 Missense_Mutation p.R160G 0.18 tolerated(0.12) benign(0.023) TCGA-33-AASL-01 15 69325553 69325553 G A NOX5 Missense_Mutation p.G264D 0.31 deleterious(0.02) benign(0.15) TCGA-33-AASL-01 15 71128661 71128661 G A LARP6 Silent p.S128S 0.28 TCGA-33-AASL-01 15 89753396 89753396 C T RLBP1 3'UTR 0.42 TCGA-33-AASL-01 16 2493787 2493787 C G CCNF Silent p.L305L 0.14 TCGA-33-AASL-01 16 31213960 31213960 C A PYCARD Nonsense_Mutation p.E18* 0.25 TCGA-33-AASL-01 16 68716293 68716293 G T CDH3 Missense_Mutation p.W362L 0.28 deleterious(0) probably_damaging(1) TCGA-33-AASL-01 16 71780640 71780640 T A AP1G1 Intron 0.24 TCGA-33-AASL-01 16 72045969 72045969 G C DHODH Silent p.V14V 0.19 TCGA-33-AASL-01 16 72094586 72094586 T C HP Missense_Mutation p.C340R 0.26 deleterious(0) probably_damaging(1) TCGA-33-AASL-01 16 72141554 72141554 C T DHX38 Silent p.T940T 0.20 TCGA-33-AASL-01 17 11631163 11631163 C - DNAH9 Frame_Shift_Del p.A1913Vfs*27 0.23 TCGA-33-AASL-01 17 30300221 30300222 CT A SUZ12 Frame_Shift_Del p.L188Mfs*2 0.14 TCGA-33-AASL-01 17 37107915 37107915 C G FBXO47 Missense_Mutation p.E179Q 0.31 deleterious(0.03) possibly_damaging(0.873) TCGA-33-AASL-01 17 37868265 37868265 A T ERBB2 Missense_Mutation p.Q329L 0.26 deleterious(0.01) possibly_damaging(0.793) TCGA-33-AASL-01 17 42156172 42156172 C T HDAC5 Missense_Mutation p.E1053K 0.22 tolerated(0.09) benign(0.066) TCGA-33-AASL-01 17 42745134 42745134 C G C17orf104 Missense_Mutation p.P619A 0.19 tolerated(0.41) benign(0.034) TCGA-33-AASL-01 17 46673648 46673648 G T HOXB6 3'UTR 0.19 TCGA-33-AASL-01 17 56051936 56051936 T A VEZF1 Silent p.L488L 0.25 TCGA-33-AASL-01 17 65027113 65027113 C T CACNG4 Missense_Mutation p.P326L 0.15 deleterious(0) probably_damaging(0.971) TCGA-33-AASL-01 17 65186439 65186439 G A HELZ Missense_Mutation p.A197V 0.12 tolerated(0.06) possibly_damaging(0.723) TCGA-33-AASL-01 17 7578407 7578407 G C TP53 Missense_Mutation p.R175G 0.28 deleterious(0) probably_damaging(0.985) TCGA-33-AASL-01 18 19997731 19997731 A T CTAGE1 Missense_Mutation p.V15E 0.35 deleterious(0) probably_damaging(0.956) TCGA-33-AASL-01 18 33077770 33077770 C T INO80C Silent p.R23R 0.22 TCGA-33-AASL-01 18 50683733 50683733 A T DCC Silent p.P423P 0.17 TCGA-33-AASL-01 18 61377487 61377487 C A SERPINB11 Missense_Mutation p.N20K 0.17 tolerated(0.98) possibly_damaging(0.784) TCGA-33-AASL-01 19 10742192 10742192 C G SLC44A2 Silent p.V161V 0.12 TCGA-33-AASL-01 19 22155506 22155506 T C ZNF208 Missense_Mutation p.Y777C 0.20 deleterious(0.04) probably_damaging(0.987) TCGA-33-AASL-01 19 2933844 2933844 C A ZNF77 Silent p.V427V 0.27 TCGA-33-AASL-01 19 2933855 2933855 G A ZNF77 Nonsense_Mutation p.R424* 0.31 TCGA-33-AASL-01 19 36124064 36124064 T G RBM42 Silent p.P198P 0.21 TCGA-33-AASL-01 19 37117776 37117776 G C ZNF382 Missense_Mutation p.C326S 0.10 deleterious(0) probably_damaging(0.999) TCGA-33-AASL-01 19 37903662 37903662 G T ZNF569 Missense_Mutation p.P633H 0.15 deleterious(0.02) probably_damaging(1) TCGA-33-AASL-01 19 39600719 39600719 G C PAPL Missense_Mutation p.W426C 0.18 deleterious(0) probably_damaging(0.984) TCGA-33-AASL-01 19 39914877 39914877 C T PLEKHG2 Missense_Mutation p.T1035I 0.21 deleterious_low_confidence(0) benign(0.398) TCGA-33-AASL-01 19 43575877 43575877 G T PSG2 Silent p.S313S 0.20 TCGA-33-AASL-01 19 46299183 46299183 T A RSPH6A Missense_Mutation p.T700S 0.26 tolerated(0.18) benign(0.292) TCGA-33-AASL-01 19 46832542 46832542 C A HIF3A Missense_Mutation p.Q507K 0.17 deleterious(0.04) possibly_damaging(0.676) TCGA-33-AASL-01 19 48624440 48624440 T A LIG1 Missense_Mutation p.Q791L 0.24 deleterious(0) probably_damaging(0.995) TCGA-33-AASL-01 19 48922984 48922984 C G GRIN2D Missense_Mutation p.I668M 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-33-AASL-01 19 49259646 49259646 A G FGF21 Silent p.T51T 0.23 TCGA-33-AASL-01 19 52448173 52448173 G T ZNF613 Missense_Mutation p.C346F 0.19 deleterious(0) probably_damaging(1) TCGA-33-AASL-01 19 52618477 52618477 T C ZNF616 Missense_Mutation p.H647R 0.26 tolerated(0.38) benign(0.089) TCGA-33-AASL-01 19 55652269 55652269 T A TNNT1 Missense_Mutation p.E123D 0.20 tolerated(0.07) probably_damaging(0.998) TCGA-33-AASL-01 19 57642060 57642060 C A USP29 Missense_Mutation p.P673T 0.20 tolerated(0.19) probably_damaging(0.924) TCGA-33-AASL-01 19 57642061 57642061 C A USP29 Missense_Mutation p.P673Q 0.20 tolerated(0.1) benign(0.303) TCGA-33-AASL-01 19 57647322 57647322 G A ZIM3 Missense_Mutation p.P128L 0.17 tolerated(0.41) benign(0) TCGA-33-AASL-01 19 58213278 58213278 G A ZNF154 Missense_Mutation p.H347Y 0.17 deleterious(0) probably_damaging(1) TCGA-33-AASL-01 19 58723638 58723638 C G ZNF274 Missense_Mutation p.S363C 0.17 tolerated(0.17) possibly_damaging(0.723) TCGA-33-AASL-01 19 59060783 59060783 A T TRIM28 Missense_Mutation p.E583V 0.25 tolerated(0.09) benign(0.067) TCGA-33-AASL-01 19 7964971 7964971 C A LRRC8E Missense_Mutation p.L522I 0.14 tolerated(0.4) benign(0.018) TCGA-33-AASL-01 19 8038711 8038711 T A ELAVL1 Missense_Mutation p.I110F 0.21 deleterious(0) probably_damaging(0.915) TCGA-33-AASL-01 19 9054272 9054272 T A MUC16 Missense_Mutation p.K10450N 0.19 benign(0.092) TCGA-33-AASL-01 19 9074358 9074358 G T MUC16 Missense_Mutation p.T4363N 0.10 unknown(0) TCGA-33-AASL-01 19 9076292 9076292 C T MUC16 Silent p.K3718K 0.23 TCGA-33-AASL-01 19 9297051 9297051 G T OR7D2 Missense_Mutation p.L198F 0.19 tolerated_low_confidence(0.39) benign(0.009) TCGA-33-AASL-01 1 109795324 109795324 A T CELSR2 Missense_Mutation p.T875S 0.17 deleterious(0.01) probably_damaging(0.987) TCGA-33-AASL-01 1 12943078 12943078 G C PRAMEF4 Missense_Mutation p.F46L 0.14 deleterious(0.02) probably_damaging(0.994) TCGA-33-AASL-01 1 144922018 144922018 T C PDE4DIP Silent p.Q337Q 0.10 TCGA-33-AASL-01 1 145562320 145562320 C T ANKRD35 Nonsense_Mutation p.R670* 0.06 TCGA-33-AASL-01 1 145771642 145771642 T C GPR89A Missense_Mutation p.Q333R 0.14 tolerated(0.13) benign(0.296) TCGA-33-AASL-01 1 150933401 150933401 C T SETDB1 Missense_Mutation p.P955S 0.08 tolerated_low_confidence(0.73) probably_damaging(0.992) TCGA-33-AASL-01 1 152484160 152484160 C A LCE5A Silent p.S50S 0.18 TCGA-33-AASL-01 1 155265073 155265073 C G PKLR Missense_Mutation p.E176D 0.14 tolerated(0.12) benign(0.057) TCGA-33-AASL-01 1 155922489 155922489 C A ARHGEF2 Missense_Mutation p.R638S 0.16 deleterious(0) probably_damaging(0.996) TCGA-33-AASL-01 1 160461110 160461110 G T SLAMF6 Missense_Mutation p.L151M 0.19 deleterious(0) probably_damaging(1) TCGA-33-AASL-01 1 162824738 162824738 T C C1orf110 Silent p.T242T 0.22 TCGA-33-AASL-01 1 167023651 167023651 C A GPA33 Nonsense_Mutation p.E294* 0.13 TCGA-33-AASL-01 1 168550307 168550307 G T XCL1 Missense_Mutation p.G65V 0.21 deleterious(0) probably_damaging(0.999) TCGA-33-AASL-01 1 170967383 170967383 G T MROH9 Missense_Mutation p.D522Y 0.17 deleterious(0.01) probably_damaging(0.995) TCGA-33-AASL-01 1 175113626 175113626 G A TNN Nonsense_Mutation p.W1233* 0.09 TCGA-33-AASL-01 1 175334348 175334348 A G TNR Silent p.S795S 0.19 TCGA-33-AASL-01 1 177226393 177226393 G C BRINP2 Missense_Mutation p.G181A 0.13 tolerated_low_confidence(0.17) benign(0.002) TCGA-33-AASL-01 1 178427531 178427531 T C RASAL2 Missense_Mutation p.L1035S 0.17 tolerated(0.09) probably_damaging(0.947) TCGA-33-AASL-01 1 181724375 181724375 C A CACNA1E Silent p.A1277A 0.21 TCGA-33-AASL-01 1 19634958 19634958 C T AKR7A2 Silent p.L159L 0.33 TCGA-33-AASL-01 1 201190695 201190695 G C IGFN1 Missense_Mutation p.C3341S 0.14 possibly_damaging(0.693) TCGA-33-AASL-01 1 207868068 207868068 G T CR1L Missense_Mutation p.W278C 0.16 deleterious(0) probably_damaging(1) TCGA-33-AASL-01 1 207868069 207868069 G T CR1L Nonsense_Mutation p.E279* 0.17 TCGA-33-AASL-01 1 215408173 215408173 G T KCNK2 Silent p.V322V 0.21 TCGA-33-AASL-01 1 22167753 22167753 G T HSPG2 Silent p.P3118P 0.24 TCGA-33-AASL-01 1 231829677 231829677 C - DISC1 Frame_Shift_Del p.P59Qfs*50 0.34 TCGA-33-AASL-01 1 233270773 233270773 T C PCNXL2 Missense_Mutation p.I1275V 0.42 deleterious(0.03) benign(0.13) TCGA-33-AASL-01 1 248616385 248616385 T A OR2T2 Missense_Mutation p.L96Q 0.14 tolerated(0.15) possibly_damaging(0.718) TCGA-33-AASL-01 1 248802273 248802273 A T OR2T35 Missense_Mutation p.L96Q 0.21 tolerated(0.14) possibly_damaging(0.718) TCGA-33-AASL-01 1 38056371 38056371 T C GNL2 Missense_Mutation p.Y107C 0.30 deleterious(0) probably_damaging(0.999) TCGA-33-AASL-01 1 38186094 38186094 C A EPHA10 Missense_Mutation p.D781Y 0.29 deleterious(0) possibly_damaging(0.651) TCGA-33-AASL-01 1 43396726 43396726 C A SLC2A1 Missense_Mutation p.R89L 0.28 tolerated(0.1) probably_damaging(1) TCGA-33-AASL-01 1 52820535 52820535 G C CC2D1B Missense_Mutation p.I778M 0.04 deleterious(0.01) probably_damaging(0.979) TCGA-33-AASL-01 1 55474351 55474351 G A BSND 3'UTR 0.46 TCGA-33-AASL-01 1 63284680 63284680 G T ATG4C Missense_Mutation p.W133C 0.19 deleterious(0) probably_damaging(0.989) TCGA-33-AASL-01 1 75175810 75175810 C T CRYZ Missense_Mutation p.R201K 0.15 tolerated(0.22) benign(0.001) TCGA-33-AASL-01 1 76397893 76397893 T A ASB17 Missense_Mutation p.K28N 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.788) TCGA-33-AASL-01 20 16359682 16359682 T C KIF16B Missense_Mutation p.K989E 0.22 deleterious_low_confidence(0) probably_damaging(0.911) TCGA-33-AASL-01 20 17434531 17434531 G A PCSK2 Missense_Mutation p.D344N 0.22 tolerated(0.22) probably_damaging(1) TCGA-33-AASL-01 20 33735035 33735035 G A EDEM2 Silent p.L9L 0.20 TCGA-33-AASL-01 20 36640120 36640120 T C TTI1 Missense_Mutation p.N700S 0.23 tolerated(0.05) possibly_damaging(0.721) TCGA-33-AASL-01 20 37121621 37121621 G T RALGAPB Missense_Mutation p.D79Y 0.22 deleterious(0) possibly_damaging(0.89) TCGA-33-AASL-01 20 48522967 48522967 G A SPATA2 Missense_Mutation p.S251L 0.14 deleterious(0) probably_damaging(0.998) TCGA-33-AASL-01 20 49575390 49575390 G T MOCS3 Missense_Mutation p.R4L 0.15 deleterious(0.02) benign(0.018) TCGA-33-AASL-01 20 55101125 55101125 G A FAM209A Silent p.%3D 0.23 TCGA-33-AASL-01 20 58519408 58519408 A T FAM217B Missense_Mutation p.K137I 0.13 deleterious(0.05) benign(0.407) TCGA-33-AASL-01 21 10862754 10862754 C A IGHV1OR21-1 Missense_Mutation p.A17D 0.11 deleterious(0) benign(0.354) TCGA-33-AASL-01 21 19726098 19726098 T A TMPRSS15 Missense_Mutation p.E321D 0.27 tolerated(0.09) possibly_damaging(0.843) TCGA-33-AASL-01 22 26736561 26736561 C G SEZ6L Missense_Mutation p.I725M 0.22 deleterious(0.04) possibly_damaging(0.905) TCGA-33-AASL-01 22 26873028 26873028 G A HPS4 Silent p.D69D 0.21 TCGA-33-AASL-01 2 105924132 105924132 C A TGFBRAP1 Missense_Mutation p.R209S 0.22 tolerated(0.63) benign(0.01) TCGA-33-AASL-01 2 108627130 108627130 C A SLC5A7 Missense_Mutation p.A519E 0.18 tolerated(1) benign(0.001) TCGA-33-AASL-01 2 112740501 112740501 G C MERTK Silent p.P409P 0.22 TCGA-33-AASL-01 2 118860850 118860850 G T INSIG2 Missense_Mutation p.V108L 0.20 deleterious(0.01) benign(0.228) TCGA-33-AASL-01 2 125547641 125547641 G T CNTNAP5 Missense_Mutation p.G971V 0.16 deleterious(0) probably_damaging(1) TCGA-33-AASL-01 2 131521069 131521069 G T AMER3 Missense_Mutation p.G475V 0.24 deleterious(0.01) probably_damaging(0.937) TCGA-33-AASL-01 2 15614323 15614323 T C NBAS Missense_Mutation p.I489M 0.19 tolerated(0.07) benign(0.031) TCGA-33-AASL-01 2 167142911 167142911 T C SCN9A Missense_Mutation p.S513G 0.20 tolerated(0.52) benign(0.004) TCGA-33-AASL-01 2 180008513 180008513 C A SESTD1 Nonsense_Mutation p.E219* 0.26 TCGA-33-AASL-01 2 197184254 197184254 C A HECW2 Missense_Mutation p.D454Y 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.834) TCGA-33-AASL-01 2 200136846 200136846 C A SATB2 3'UTR 0.21 TCGA-33-AASL-01 2 201284122 201284122 G A SPATS2L Silent p.S116S 0.30 TCGA-33-AASL-01 2 209190800 209190800 C T PIKFYVE Missense_Mutation p.P1089S 0.18 deleterious(0.01) possibly_damaging(0.694) TCGA-33-AASL-01 2 220348924 220348924 C A SPEG Missense_Mutation p.Q2247K 0.10 benign(0.11) TCGA-33-AASL-01 2 231175895 231175895 C T SP140 Silent p.V770V 0.11 TCGA-33-AASL-01 2 233345478 233345478 G A ECEL1 Missense_Mutation p.P701S 0.17 deleterious(0.03) benign(0.383) TCGA-33-AASL-01 2 242035373 242035373 G A MTERFD2 3'UTR 0.24 TCGA-33-AASL-01 2 24952591 24952591 G C NCOA1 Missense_Mutation p.M1036I 0.09 tolerated(0.18) benign(0.001) TCGA-33-AASL-01 2 27800293 27800293 T A C2orf16 Missense_Mutation p.I285K 0.23 tolerated(0.15) benign(0.319) TCGA-33-AASL-01 2 37035669 37035669 C A VIT Missense_Mutation p.L482I 0.18 deleterious(0.02) probably_damaging(0.915) TCGA-33-AASL-01 2 37232775 37232775 C A HEATR5B Missense_Mutation p.Q1635H 0.08 tolerated(0.06) benign(0.2) TCGA-33-AASL-01 2 47702337 47702337 C G MSH2 Missense_Mutation p.Q645E 0.12 deleterious(0.03) possibly_damaging(0.868) TCGA-33-AASL-01 2 73679169 73679169 C G ALMS1 Missense_Mutation p.Q1838E 0.19 probably_damaging(0.96) TCGA-33-AASL-01 2 80529429 80529429 C T LRRTM1 Missense_Mutation p.E506K 0.23 deleterious(0.03) probably_damaging(0.972) TCGA-33-AASL-01 2 86333389 86333389 G C PTCD3 Missense_Mutation p.V7L 0.15 tolerated_low_confidence(0.23) benign(0.001) TCGA-33-AASL-01 3 112738435 112738435 C G C3orf17 Silent p.A20A 0.16 TCGA-33-AASL-01 3 113375148 113375148 T A KIAA2018 Missense_Mutation p.Y1794F 0.18 probably_damaging(0.997) TCGA-33-AASL-01 3 113376278 113376278 T A KIAA2018 Missense_Mutation p.E1417D 0.16 benign(0.015) TCGA-33-AASL-01 3 113850099 113850099 G T DRD3 Missense_Mutation p.A291E 0.29 tolerated(0.62) benign(0.313) TCGA-33-AASL-01 3 121207013 121207013 T C POLQ Missense_Mutation p.R1589G 0.19 tolerated_low_confidence(0.41) benign(0.001) TCGA-33-AASL-01 3 122436936 122436936 C T PARP14 Missense_Mutation p.P1340L 0.19 deleterious(0) probably_damaging(0.934) TCGA-33-AASL-01 3 124731747 124731747 T C HEG1 Silent p.Q892Q 0.17 TCGA-33-AASL-01 3 125826029 125826029 T C ALDH1L1 Missense_Mutation p.E813G 0.19 deleterious(0) benign(0.269) TCGA-33-AASL-01 3 130354581 130354581 G T COL6A6 Silent p.G1689G 0.33 TCGA-33-AASL-01 3 139092163 139092163 G A COPB2 Missense_Mutation p.A329V 0.11 deleterious(0.01) possibly_damaging(0.752) TCGA-33-AASL-01 3 142178217 142178217 T C ATR Missense_Mutation p.M2401V 0.09 tolerated(0.3) benign(0.065) TCGA-33-AASL-01 3 146309623 146309623 G C PLSCR5 Missense_Mutation p.Q167E 0.35 deleterious(0) possibly_damaging(0.786) TCGA-33-AASL-01 3 169820493 169820493 T A PHC3 Silent p.P869P 0.08 TCGA-33-AASL-01 3 18390801 18390801 T C SATB1 Missense_Mutation p.E750G 0.06 deleterious(0) benign(0.359) TCGA-33-AASL-01 3 185146531 185146531 A T MAP3K13 Silent p.T54T 0.10 TCGA-33-AASL-01 3 185975678 185975678 C T DGKG Missense_Mutation p.G492E 0.12 deleterious(0) probably_damaging(1) TCGA-33-AASL-01 3 186295477 186295477 T C DNAJB11 Missense_Mutation p.F115S 0.15 tolerated(0.46) probably_damaging(0.997) TCGA-33-AASL-01 3 186504021 186504021 C G EIF4A2 Missense_Mutation p.Q196E 0.09 deleterious(0) possibly_damaging(0.851) TCGA-33-AASL-01 3 190930396 190930396 C A OSTN Silent p.V25V 0.11 TCGA-33-AASL-01 3 196386733 196386733 G C NRROS Missense_Mutation p.W73C 0.13 deleterious(0.03) possibly_damaging(0.799) TCGA-33-AASL-01 3 196509642 196509642 C G PAK2 Missense_Mutation p.S42C 0.05 deleterious_low_confidence(0.05) possibly_damaging(0.566) TCGA-33-AASL-01 3 196509651 196509651 A T PAK2 Missense_Mutation p.E45V 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.558) TCGA-33-AASL-01 3 26751107 26751107 T C LRRC3B 5'UTR 0.33 TCGA-33-AASL-01 3 27465562 27465562 C T SLC4A7 Missense_Mutation p.G402E 0.15 tolerated(0.99) benign(0.17) TCGA-33-AASL-01 3 47079239 47079239 C - SETD2 Frame_Shift_Del p.E2423Kfs*27 0.26 TCGA-33-AASL-01 3 89480312 89480312 C A EPHA3 Missense_Mutation p.Q717K 0.13 deleterious(0.02) probably_damaging(0.977) TCGA-33-AASL-01 4 102783767 102783767 A G BANK1 Missense_Mutation p.I237V 0.16 tolerated(0.09) benign(0.013) TCGA-33-AASL-01 4 109664943 109664943 A T ETNPPL Splice_Site p.X457_splice 0.23 TCGA-33-AASL-01 4 114288942 114288942 G A ANK2 Silent p.Q3751Q 0.18 TCGA-33-AASL-01 4 121742455 121742455 C A PRDM5 Missense_Mutation p.D116Y 0.07 tolerated(0.09) possibly_damaging(0.8) TCGA-33-AASL-01 4 123236808 123236808 G A KIAA1109 Missense_Mutation p.D3502N 0.18 probably_damaging(0.996) TCGA-33-AASL-01 4 166414376 166414376 G C CPE Silent p.A389A 0.22 TCGA-33-AASL-01 4 187541939 187541939 C A FAT1 Missense_Mutation p.G1934V 0.16 probably_damaging(1) TCGA-33-AASL-01 4 187541940 187541940 C A FAT1 Missense_Mutation p.G1934C 0.16 probably_damaging(1) TCGA-33-AASL-01 4 264673 264673 G T ZNF732 3'UTR 0.62 TCGA-33-AASL-01 4 3949511 3949511 A G FAM86EP RNA 0.37 TCGA-33-AASL-01 4 44177150 44177150 C A KCTD8 Missense_Mutation p.C360F 0.20 deleterious(0.03) benign(0.396) TCGA-33-AASL-01 4 5975433 5975433 C A C4orf50 Missense_Mutation p.A595S 0.34 deleterious(0.01) probably_damaging(0.996) TCGA-33-AASL-01 4 85630112 85630112 G C WDFY3 Missense_Mutation p.L2723V 0.39 deleterious(0) probably_damaging(0.964) TCGA-33-AASL-01 4 85711043 85711043 C A WDFY3 Nonsense_Mutation p.E1169* 0.22 TCGA-33-AASL-01 5 101592988 101592988 G C SLCO4C1 Missense_Mutation p.L434V 0.25 tolerated(0.42) benign(0.247) TCGA-33-AASL-01 5 112177106 112177106 G T APC Missense_Mutation p.D1939Y 0.10 possibly_damaging(0.786) TCGA-33-AASL-01 5 113740453 113740453 G T KCNN2 Missense_Mutation p.V301F 0.17 deleterious(0) probably_damaging(0.954) TCGA-33-AASL-01 5 115346496 115346496 G A AQPEP Missense_Mutation p.D718N 0.19 tolerated(0.06) possibly_damaging(0.869) TCGA-33-AASL-01 5 127599223 127599223 C A FBN2 Missense_Mutation p.V2696L 0.25 tolerated(0.09) possibly_damaging(0.516) TCGA-33-AASL-01 5 131879096 131879096 G T IL5 Silent p.P25P 0.19 TCGA-33-AASL-01 5 13719013 13719013 T A DNAH5 Silent p.A4159A 0.15 TCGA-33-AASL-01 5 140237199 140237199 G T PCDHA10 Silent p.L522L 0.17 TCGA-33-AASL-01 5 140557637 140557637 A G PCDHB8 Missense_Mutation p.I8V 0.16 tolerated_low_confidence(0.48) benign(0.002) TCGA-33-AASL-01 5 140580992 140580992 G A PCDHB11 Missense_Mutation p.V549M 0.11 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-33-AASL-01 5 140625782 140625782 G A PCDHB15 Silent p.L212L 0.27 TCGA-33-AASL-01 5 140719619 140719619 C T PCDHGA2 Missense_Mutation p.L361F 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.871) TCGA-33-AASL-01 5 140764813 140764813 G T PCDHGA7 Nonsense_Mutation p.E783* 0.24 TCGA-33-AASL-01 5 145826928 145826928 G A TCERG1 Missense_Mutation p.G6R 0.39 deleterious_low_confidence(0.01) unknown(0) TCGA-33-AASL-01 5 145878126 145878126 G T TCERG1 Missense_Mutation p.K753N 0.35 deleterious(0) unknown(0) TCGA-33-AASL-01 5 147793867 147793867 C T FBXO38 Missense_Mutation p.S421L 0.18 tolerated(0.07) benign(0.017) TCGA-33-AASL-01 5 154395220 154395220 C T KIF4B Missense_Mutation p.L601F 0.16 deleterious(0) benign(0.004) TCGA-33-AASL-01 5 156346463 156346463 C A TIMD4 3'UTR 0.32 TCGA-33-AASL-01 5 156593256 156593256 C A FAM71B 5'UTR 0.31 TCGA-33-AASL-01 5 169472820 169472820 A T DOCK2 Missense_Mutation p.M1293L 0.14 tolerated(0.1) benign(0.371) TCGA-33-AASL-01 5 176737527 176737527 T A MXD3 Missense_Mutation p.K74M 0.25 deleterious(0) probably_damaging(0.963) TCGA-33-AASL-01 5 178413746 178413746 G C GRM6 Silent p.A503A 0.13 TCGA-33-AASL-01 5 24488216 24488216 C A CDH10 Missense_Mutation p.E641D 0.17 tolerated(0.14) probably_damaging(0.973) TCGA-33-AASL-01 5 24488254 24488254 C G CDH10 Missense_Mutation p.V629L 0.11 tolerated(0.61) possibly_damaging(0.785) TCGA-33-AASL-01 5 33577141 33577141 G T ADAMTS12 Missense_Mutation p.P997H 0.24 deleterious(0) probably_damaging(0.995) TCGA-33-AASL-01 5 35065338 35065338 T C PRLR Silent p.E574E 0.20 TCGA-33-AASL-01 5 56778334 56778334 G T ACTBL2 Silent p.T67T 0.15 TCGA-33-AASL-01 5 60448742 60448742 G A NDUFAF2 Missense_Mutation p.G157E 0.40 deleterious(0) probably_damaging(0.984) TCGA-33-AASL-01 5 64867704 64867704 G T PPWD1 Missense_Mutation p.G187V 0.22 deleterious(0) probably_damaging(0.985) TCGA-33-AASL-01 5 86658481 86658481 G T RASA1 Silent p.L482L 0.12 TCGA-33-AASL-01 5 887506 887506 G A BRD9 Silent p.I229I 0.13 TCGA-33-AASL-01 5 90074747 90074747 G T GPR98 Missense_Mutation p.M4305I 0.25 benign(0.001) TCGA-33-AASL-01 6 111726799 111726799 T A REV3L Missense_Mutation p.N147Y 0.24 deleterious(0) probably_damaging(0.992) TCGA-33-AASL-01 6 123892111 123892111 A T TRDN Silent p.V63V 0.29 TCGA-33-AASL-01 6 161010715 161010715 C A LPA Missense_Mutation p.D1273Y 0.28 deleterious(0) probably_damaging(0.945) TCGA-33-AASL-01 6 161010716 161010716 C T LPA Silent p.Q1272Q 0.27 TCGA-33-AASL-01 6 22569902 22569902 C A HDGFL1 Missense_Mutation p.T33N 0.25 tolerated(0.09) possibly_damaging(0.812) TCGA-33-AASL-01 6 24357638 24357638 A T KAAG1 5'UTR 0.14 TCGA-33-AASL-01 6 25471403 25471403 G A LRRC16A Missense_Mutation p.D233N 0.16 deleterious(0.02) probably_damaging(0.987) TCGA-33-AASL-01 6 27101240 27101241 - T HIST1H2AG Frame_Shift_Ins p.*131L 0.12 TCGA-33-AASL-01 6 27114538 27114538 C A HIST1H2BK Missense_Mutation p.G14C 0.14 deleterious_low_confidence(0) unknown(0) TCGA-33-AASL-01 6 31498629 31498629 G C DDX39B Missense_Mutation p.I399M 0.14 tolerated(0.13) benign(0.004) TCGA-33-AASL-01 6 31895742 31895742 C T CFB Silent p.D19D 0.16 TCGA-33-AASL-01 6 33156301 33156301 C T COL11A2 Silent p.K148K 0.11 TCGA-33-AASL-01 6 36449351 36449351 A G KCTD20 Missense_Mutation p.H224R 0.09 deleterious(0) benign(0.279) TCGA-33-AASL-01 6 37298882 37298882 G T TBC1D22B Silent p.L484L 0.17 TCGA-33-AASL-01 6 42852435 42852435 C T RPL7L1 Silent p.V123V 0.11 TCGA-33-AASL-01 6 43403973 43403973 C G ABCC10 Silent p.L621L 0.23 TCGA-33-AASL-01 6 47253954 47253954 C G TNFRSF21 Missense_Mutation p.K158N 0.27 deleterious(0.01) probably_damaging(0.988) TCGA-33-AASL-01 6 47680250 47680250 C G GPR115 Nonsense_Mutation p.S153* 0.21 TCGA-33-AASL-01 6 47776029 47776029 C T OPN5 Missense_Mutation p.A299V 0.19 deleterious(0.01) possibly_damaging(0.856) TCGA-33-AASL-01 6 57398293 57398293 C G PRIM2 Missense_Mutation p.I332M 0.04 tolerated(0.08) benign(0.096) TCGA-33-AASL-01 6 74528122 74528122 C T CD109 Missense_Mutation p.P1308L 0.21 tolerated(0.37) benign(0.004) TCGA-33-AASL-01 6 84300947 84300947 G C SNAP91 Missense_Mutation p.S666W 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-33-AASL-01 6 90039648 90039648 G A UBE2J1 Missense_Mutation p.S236F 0.24 deleterious(0.04) benign(0.172) TCGA-33-AASL-01 7 102960286 102960286 C G DNAJC2 Missense_Mutation p.W363C 0.29 tolerated(0.18) probably_damaging(0.944) TCGA-33-AASL-01 7 107393941 107393941 T C CBLL1 Silent p.L89L 0.25 TCGA-33-AASL-01 7 135302348 135302348 A T NUP205 Splice_Site p.X1231_splice 0.12 TCGA-33-AASL-01 7 136699754 136699754 A T CHRM2 Missense_Mutation p.I48F 0.19 tolerated(1) probably_damaging(1) TCGA-33-AASL-01 7 138833107 138833107 A G TTC26 Missense_Mutation p.N234S 0.32 tolerated(0.16) benign(0.114) TCGA-33-AASL-01 7 142651002 142651002 C A KEL Silent p.A322A 0.16 TCGA-33-AASL-01 7 143632695 143632695 G T OR2F2 Missense_Mutation p.V124L 0.36 deleterious(0) benign(0.052) TCGA-33-AASL-01 7 150691009 150691009 C A NOS3 Silent p.R40R 0.23 TCGA-33-AASL-01 7 154794650 154794651 - C PAXIP1 5'UTR 0.45 TCGA-33-AASL-01 7 156520630 156520630 T C LMBR1 Silent p.G329G 0.15 TCGA-33-AASL-01 7 73791045 73791045 G A CLIP2 Missense_Mutation p.A772T 0.38 tolerated(0.09) benign(0.002) TCGA-33-AASL-01 7 86794276 86794276 G T DMTF1 Missense_Mutation p.D7Y 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.502) TCGA-33-AASL-01 7 87214932 87214932 T C ABCB1 Missense_Mutation p.H61R 0.20 deleterious(0.01) probably_damaging(0.974) TCGA-33-AASL-01 7 90896065 90896065 G T FZD1 Missense_Mutation p.G624C 0.17 deleterious(0) probably_damaging(0.996) TCGA-33-AASL-01 7 94043203 94043203 C G COL1A2 Intron 0.22 TCGA-33-AASL-01 7 98580966 98580966 A G TRRAP Missense_Mutation p.N2962S 0.34 benign(0.028) TCGA-33-AASL-01 7 99264391 99264391 G A CYP3A5 Intron 0.30 TCGA-33-AASL-01 8 100654078 100654078 G C VPS13B Missense_Mutation p.G1779R 0.19 tolerated(0.06) probably_damaging(0.996) TCGA-33-AASL-01 8 110523059 110523059 C T PKHD1L1 Silent p.L3817L 0.17 TCGA-33-AASL-01 8 113243777 113243777 G T CSMD3 Missense_Mutation p.L3609M 0.21 deleterious(0.04) benign(0.007) TCGA-33-AASL-01 8 139890108 139890108 G C COL22A1 Silent p.L181L 0.23 TCGA-33-AASL-01 8 17613231 17613231 T C MTUS1 Missense_Mutation p.Y29C 0.24 tolerated(0.32) benign(0.072) TCGA-33-AASL-01 8 33246925 33246925 C G FUT10 Silent p.L256L 0.10 TCGA-33-AASL-01 8 68131708 68131708 G A ARFGEF1 Silent p.F1432F 0.19 TCGA-33-AASL-01 8 75929606 75929606 G T CRISPLD1 Missense_Mutation p.G350C 0.19 deleterious(0) probably_damaging(1) TCGA-33-AASL-01 8 77690612 77690612 G A ZFHX4 Missense_Mutation p.A1088T 0.17 benign(0.003) TCGA-33-AASL-01 8 77775844 77775844 T C ZFHX4 Silent p.P3298P 0.16 TCGA-33-AASL-01 8 87242418 87242418 C A SLC7A13 Missense_Mutation p.G30V 0.10 deleterious(0) probably_damaging(0.993) TCGA-33-AASL-01 8 87242419 87242419 C A SLC7A13 Nonsense_Mutation p.G30* 0.09 TCGA-33-AASL-01 8 87242420 87242420 T A SLC7A13 Silent p.A29A 0.09 TCGA-33-AASL-01 8 87683254 87683254 T A CNGB3 Missense_Mutation p.K137N 0.18 deleterious(0.01) possibly_damaging(0.477) TCGA-33-AASL-01 9 114246683 114246683 C G KIAA0368 Missense_Mutation p.R77P 0.28 tolerated_low_confidence(0.14) unknown(0) TCGA-33-AASL-01 9 129148873 129148873 G T MVB12B Missense_Mutation p.K115N 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-33-AASL-01 9 140135751 140135751 G T TUBB4B 5'UTR 0.82 TCGA-33-AASL-01 9 39140598 39140598 T A CNTNAP3 Silent p.R598R 0.26 TCGA-33-AASL-01 9 464189 464189 A G DOCK8 Silent p.K2090K 0.24 TCGA-33-AASL-01 9 5968373 5968373 C A KIAA2026 Missense_Mutation p.G620C 0.32 deleterious(0.01) probably_damaging(0.969) TCGA-33-AASL-01 9 71628877 71628877 G A PRKACG Silent p.F44F 0.16 TCGA-33-AASL-01 9 79324330 79324330 G T PRUNE2 Missense_Mutation p.L954I 0.17 tolerated(1) benign(0.001) TCGA-33-AASL-01 9 968080 968080 G A DMRT1 Missense_Mutation p.E355K 0.25 deleterious(0) possibly_damaging(0.663) TCGA-33-AASL-01 X 100699098 100699098 G A RP1-164F3.8 5'Flank 0.16 TCGA-33-AASL-01 X 100699099 100699099 A T RP1-164F3.8 5'Flank 0.16 TCGA-33-AASL-01 X 10102475 10102475 G T WWC3 Missense_Mutation p.D868Y 0.18 deleterious(0) probably_damaging(0.997) TCGA-33-AASL-01 X 10102616 10102616 C T WWC3 Nonsense_Mutation p.R915* 0.12 TCGA-33-AASL-01 X 101409044 101409044 C T BEX5 Missense_Mutation p.G65E 0.19 deleterious(0.02) benign(0.174) TCGA-33-AASL-01 X 102338597 102338597 A T NXF3 Missense_Mutation p.N125K 0.18 deleterious(0) benign(0.232) TCGA-33-AASL-01 X 105132369 105132369 C A NRK Missense_Mutation p.A112E 0.24 deleterious(0) probably_damaging(0.96) TCGA-33-AASL-01 X 107301374 107301374 A T VSIG1 Silent p.R52R 0.21 TCGA-33-AASL-01 X 107316040 107316040 C A VSIG1 Silent p.I218I 0.10 TCGA-33-AASL-01 X 108786006 108786006 G A NXT2 3'UTR 0.27 TCGA-33-AASL-01 X 110555875 110555875 G T DCX Missense_Mutation p.H422N 0.18 deleterious_low_confidence(0.04) benign(0.119) TCGA-33-AASL-01 X 110644265 110644265 G C DCX Missense_Mutation p.L301V 0.16 deleterious(0.02) probably_damaging(0.979) TCGA-33-AASL-01 X 111090433 111090433 G T TRPC5 Missense_Mutation p.Q537K 0.20 deleterious(0) probably_damaging(0.999) TCGA-33-AASL-01 X 115304322 115304322 G C AGTR2 Silent p.L263L 0.19 TCGA-33-AASL-01 X 117810009 117810009 C A DOCK11 Silent p.G1770G 0.18 TCGA-33-AASL-01 X 118221907 118221907 C A KIAA1210 Nonsense_Mutation p.E1096* 0.15 TCGA-33-AASL-01 X 118771082 118771082 C A SEPT6 Missense_Mutation p.E288D 0.10 tolerated(0.1) probably_damaging(0.996) TCGA-33-AASL-01 X 118972003 118972003 T C UPF3B Missense_Mutation p.E340G 0.17 tolerated(0.06) probably_damaging(0.954) TCGA-33-AASL-01 X 119660612 119660612 C A CUL4B 3'UTR 0.18 TCGA-33-AASL-01 X 123514341 123514341 T A TENM1 3'UTR 0.21 TCGA-33-AASL-01 X 123518189 123518189 G A TENM1 Missense_Mutation p.L2198F 0.19 tolerated(0.06) probably_damaging(0.945) TCGA-33-AASL-01 X 12937510 12937510 A T TLR8 Silent p.T117T 0.23 TCGA-33-AASL-01 X 129546805 129546805 G T RBMX2 Missense_Mutation p.D318Y 0.16 tolerated_low_confidence(0.06) unknown(0) TCGA-33-AASL-01 X 135593020 135593020 C A HTATSF1 Missense_Mutation p.F372L 0.23 deleterious(0) probably_damaging(0.971) TCGA-33-AASL-01 X 138708845 138708845 C A MCF2 Missense_Mutation p.G230V 0.21 tolerated(0.21) benign(0.011) TCGA-33-AASL-01 X 148564318 148564318 C T IDS Missense_Mutation p.D327N 0.14 tolerated(0.45) benign(0.001) TCGA-33-AASL-01 X 150349227 150349227 G T GPR50 Missense_Mutation p.R391I 0.22 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-33-AASL-01 X 150840861 150840861 G T PASD1 Missense_Mutation p.K548N 0.14 tolerated_low_confidence(0.25) benign(0) TCGA-33-AASL-01 X 152225672 152225672 G T PNMA3 Missense_Mutation p.G87V 0.14 deleterious(0) probably_damaging(0.999) TCGA-33-AASL-01 X 153171372 153171372 C T AVPR2 Missense_Mutation p.H138Y 0.10 tolerated(0.58) probably_damaging(0.974) TCGA-33-AASL-01 X 153627684 153627684 G A RPL10 Missense_Mutation p.R10Q 0.18 tolerated(0.09) benign(0.013) TCGA-33-AASL-01 X 154157955 154157955 G C F8 Silent p.T1370T 0.15 TCGA-33-AASL-01 X 154754176 154754176 A G TMLHE Missense_Mutation p.V100A 0.17 deleterious(0) possibly_damaging(0.593) TCGA-33-AASL-01 X 19373865 19373865 G T PDHA1 Missense_Mutation p.R312I 0.23 tolerated(0.2) probably_damaging(1) TCGA-33-AASL-01 X 24844660 24844660 G T POLA1 Silent p.V1220V 0.29 TCGA-33-AASL-01 X 26213128 26213128 C T MAGEB6 Missense_Mutation p.H389Y 0.16 tolerated(1) possibly_damaging(0.61) TCGA-33-AASL-01 X 2799104 2799104 C T GYG2 Silent p.A452A 0.31 TCGA-33-AASL-01 X 30254217 30254217 G T MAGEB3 Missense_Mutation p.R59L 0.26 tolerated(0.81) benign(0.061) TCGA-33-AASL-01 X 30872545 30872545 C A TAB3 Missense_Mutation p.G413W 0.15 deleterious(0) possibly_damaging(0.908) TCGA-33-AASL-01 X 31089770 31089770 T A FTHL17 Missense_Mutation p.M101L 0.16 tolerated(0.14) benign(0.182) TCGA-33-AASL-01 X 32486732 32486732 G C DMD Missense_Mutation p.S1015R 0.24 probably_damaging(0.988) TCGA-33-AASL-01 X 34657366 34657366 G T TMEM47 Missense_Mutation p.A122E 0.16 deleterious(0) probably_damaging(0.999) TCGA-33-AASL-01 X 37027324 37027324 C A FAM47C Missense_Mutation p.H281N 0.19 tolerated(0.06) possibly_damaging(0.888) TCGA-33-AASL-01 X 37545185 37545185 G A XK 5'UTR 0.27 TCGA-33-AASL-01 X 47070605 47070605 G T UBA1 Missense_Mutation p.Q815H 0.17 tolerated(0.08) benign(0.049) TCGA-33-AASL-01 X 57146675 57146675 C A SPIN2B Missense_Mutation p.G130C 0.24 deleterious(0.01) probably_damaging(1) TCGA-33-AASL-01 X 63444745 63444745 T A ASB12 Missense_Mutation p.Q262H 0.22 tolerated(0.08) benign(0.01) TCGA-33-AASL-01 X 67518891 67518891 G A OPHN1 Nonsense_Mutation p.Q68* 0.21 TCGA-33-AASL-01 X 70793601 70793601 C A OGT Missense_Mutation p.P1033H 0.22 deleterious(0.03) possibly_damaging(0.59) TCGA-33-AASL-01 X 71359372 71359372 C A NHSL2 Silent p.A658A 0.17 TCGA-33-AASL-01 X 72433995 72433995 C A NAP1L2 Missense_Mutation p.V112L 0.19 tolerated(0.07) probably_damaging(0.996) TCGA-33-AASL-01 X 74517388 74517388 G C UPRT Missense_Mutation p.G188R 0.16 deleterious(0) probably_damaging(1) TCGA-33-AASL-01 X 79937997 79937997 C A BRWD3 Missense_Mutation p.S1455I 0.17 deleterious(0.03) probably_damaging(0.994) TCGA-33-AASL-01 X 80371719 80371719 T A HMGN5 Missense_Mutation p.E84V 0.11 deleterious(0) possibly_damaging(0.643) TCGA-33-AASL-01 X 92964860 92964860 G A FAM133A Missense_Mutation p.E148K 0.20 deleterious_low_confidence(0.02) unknown(0) TCGA-33-AASL-01 X 96603158 96603158 C A DIAPH2 Missense_Mutation p.T963N 0.15 tolerated(0.58) benign(0.194) TCGA-34-2596-01 10 129350870 129350871 - A NPS Frame_Shift_Ins p.T82Nfs*19 0.41 TCGA-34-2596-01 10 135051452 135051452 C T VENTX Nonsense_Mutation p.Q12* 0.28 TCGA-34-2596-01 10 135440236 135440236 C A FRG2B Missense_Mutation p.G4V 0.05 deleterious(0.01) probably_damaging(0.919) TCGA-34-2596-01 10 27324214 27324214 T C ANKRD26 Silent p.L1055L 0.44 TCGA-34-2596-01 10 72535011 72535011 A G TBATA Missense_Mutation p.C236R 0.27 deleterious(0) probably_damaging(0.972) TCGA-34-2596-01 10 73571742 73571742 T C CDH23 Missense_Mutation p.M877T 0.35 deleterious(0) benign(0.008) TCGA-34-2596-01 11 110035605 110035605 C A ZC3H12C Missense_Mutation p.L599M 0.39 tolerated(0.16) probably_damaging(0.999) TCGA-34-2596-01 11 116661365 116661365 A G APOA5 Missense_Mutation p.Y194H 0.33 deleterious(0) probably_damaging(1) TCGA-34-2596-01 11 117863985 117863985 G A IL10RA Missense_Mutation p.E133K 0.40 tolerated(0.14) benign(0.034) TCGA-34-2596-01 11 123810461 123810461 G - OR4D5 Frame_Shift_Del p.V47Sfs*2 0.36 TCGA-34-2596-01 11 124252357 124252357 C T OR8B2 Missense_Mutation p.D295N 0.34 deleterious_low_confidence(0.01) benign(0.04) TCGA-34-2596-01 11 124294406 124294407 - G OR8B4 Frame_Shift_Ins p.R121Pfs*49 0.40 TCGA-34-2596-01 11 17552819 17552819 A G USH1C Missense_Mutation p.L90P 0.39 deleterious(0) probably_damaging(1) TCGA-34-2596-01 11 32456334 32456334 G C WT1 Missense_Mutation p.S186R 0.48 deleterious_low_confidence(0.01) possibly_damaging(0.452) TCGA-34-2596-01 11 45274136 45274136 G T SYT13 Missense_Mutation p.P228T 0.54 deleterious(0) probably_damaging(0.996) TCGA-34-2596-01 11 46690953 46690953 G C ATG13 Splice_Site p.X483_splice 0.39 TCGA-34-2596-01 11 55541774 55541774 G T OR5D13 Silent p.L287L 0.39 TCGA-34-2596-01 11 55904776 55904776 A C OR8J3 Missense_Mutation p.L140R 0.37 deleterious(0.04) possibly_damaging(0.673) TCGA-34-2596-01 11 58294862 58294862 C A LPXN 3'UTR 0.45 TCGA-34-2596-01 11 612717 612717 G A IRF7 Silent p.L493L 0.63 TCGA-34-2596-01 11 62430586 62430586 T C C11orf48 3'UTR 0.54 TCGA-34-2596-01 11 6502739 6502739 G T TIMM10B 5'UTR 0.50 TCGA-34-2596-01 11 83673942 83673942 G T DLG2 Missense_Mutation p.D442E 0.31 tolerated(1) benign(0.004) TCGA-34-2596-01 12 102046455 102046455 G T MYBPC1 Splice_Site p.X484_splice 0.23 TCGA-34-2596-01 12 102061515 102061515 G T MYBPC1 Missense_Mutation p.D781Y 0.21 deleterious(0) benign(0.336) TCGA-34-2596-01 12 102559614 102559614 T A PARPBP Missense_Mutation p.N258K 0.23 deleterious(0.01) benign(0.143) TCGA-34-2596-01 12 104014315 104014315 G C STAB2 Missense_Mutation p.G134A 0.21 deleterious(0) probably_damaging(0.999) TCGA-34-2596-01 12 104341167 104341167 G C HSP90B1 Missense_Mutation p.E781Q 0.30 deleterious(0.04) unknown(0) TCGA-34-2596-01 12 113601994 113601994 G A DDX54 Nonsense_Mutation p.Q606* 0.42 TCGA-34-2596-01 12 121435355 121435355 A G HNF1A Missense_Mutation p.Q463R 0.19 deleterious(0) possibly_damaging(0.798) TCGA-34-2596-01 12 122413512 122413512 G C WDR66 Missense_Mutation p.R976T 0.33 deleterious(0.02) possibly_damaging(0.573) TCGA-34-2596-01 12 125834677 125834677 G T TMEM132B Silent p.S244S 0.36 TCGA-34-2596-01 12 129558880 129558880 T C TMEM132D Missense_Mutation p.H947R 0.29 deleterious(0.04) benign(0.018) TCGA-34-2596-01 12 129559570 129559570 T C TMEM132D Missense_Mutation p.D717G 0.30 deleterious(0) probably_damaging(1) TCGA-34-2596-01 12 1895244 1895244 A T ADIPOR2 3'UTR 0.30 TCGA-34-2596-01 12 20854375 20854375 G T SLCO1C1 Missense_Mutation p.D85Y 0.28 deleterious(0) probably_damaging(0.997) TCGA-34-2596-01 12 46246297 46246297 G A ARID2 Missense_Mutation p.R1464H 0.21 tolerated_low_confidence(0.1) probably_damaging(0.967) TCGA-34-2596-01 12 49416382 49416382 G T KMT2D Nonsense_Mutation p.Y5443* 0.29 TCGA-34-2596-01 12 55523991 55523991 C G OR9K2 Missense_Mutation p.R147G 0.29 deleterious(0) probably_damaging(0.944) TCGA-34-2596-01 12 62148664 62148664 G C FAM19A2 Nonsense_Mutation p.S83* 0.05 TCGA-34-2596-01 12 63544086 63544086 C A AVPR1A Silent p.L177L 0.28 TCGA-34-2596-01 12 70723272 70723272 G A CNOT2 Missense_Mutation p.G103D 0.30 deleterious_low_confidence(0) benign(0.117) TCGA-34-2596-01 12 7361113 7361113 C T PEX5 Silent p.T429T 0.19 TCGA-34-2596-01 12 75444795 75444795 C A KCNC2 Silent p.V330V 0.31 TCGA-34-2596-01 12 88379738 88379738 T C C12orf50 Missense_Mutation p.R339G 0.29 deleterious(0) possibly_damaging(0.864) TCGA-34-2596-01 12 9304846 9304846 A G PZP Silent p.G1394G 0.26 TCGA-34-2596-01 13 107220071 107220071 G A ARGLU1 Missense_Mutation p.S66F 0.55 deleterious(0.01) benign(0.341) TCGA-34-2596-01 13 108882380 108882380 C T ABHD13 Missense_Mutation p.P272S 0.07 deleterious(0) probably_damaging(1) TCGA-34-2596-01 13 115091304 115091304 A G CHAMP1 Missense_Mutation p.I663V 0.36 tolerated(0.42) benign(0.002) TCGA-34-2596-01 13 26621149 26621149 G C SHISA2 Missense_Mutation p.I130M 0.38 deleterious(0) possibly_damaging(0.844) TCGA-34-2596-01 13 42877380 42877380 G T AKAP11 Nonsense_Mutation p.E1500* 0.39 TCGA-34-2596-01 13 95095744 95095744 C A DCT Nonsense_Mutation p.E476* 0.41 TCGA-34-2596-01 14 106405633 106405633 G A IGHV6-1 Missense_Mutation p.T114M 0.53 deleterious(0.02) benign(0.093) TCGA-34-2596-01 14 20443871 20443871 G T OR4K15 Missense_Mutation p.G65V 0.36 deleterious(0) probably_damaging(1) TCGA-34-2596-01 14 22465822 22465822 A G TRAV17 5'UTR 0.45 TCGA-34-2596-01 14 63174751 63174751 G C KCNH5 Silent p.L814L 0.04 TCGA-34-2596-01 14 93118824 93118824 C T RIN3 Missense_Mutation p.P477L 0.38 deleterious(0.03) possibly_damaging(0.66) TCGA-34-2596-01 15 100871133 100871133 C T ADAMTS17 Missense_Mutation p.E193K 0.25 tolerated(1) benign(0) TCGA-34-2596-01 15 25310188 25310188 C A SNORD116-6 RNA 0.28 TCGA-34-2596-01 15 25332819 25332819 T A SNORD116-20 RNA 0.26 TCGA-34-2596-01 15 33858998 33858998 C A RYR3 Silent p.V422V 0.28 TCGA-34-2596-01 15 34018666 34018666 G T RYR3 Missense_Mutation p.G2331V 0.38 probably_damaging(1) TCGA-34-2596-01 15 42172460 42172460 A C SPTBN5 Missense_Mutation p.S903R 0.26 possibly_damaging(0.595) TCGA-34-2596-01 15 42434795 42434795 C T PLA2G4F Missense_Mutation p.D754N 0.31 tolerated(0.63) benign(0.007) TCGA-34-2596-01 15 54006673 54006673 C A WDR72 Missense_Mutation p.E183D 0.38 tolerated(0.63) benign(0.003) TCGA-34-2596-01 15 59910378 59910378 G C GCNT3 Intron 0.34 TCGA-34-2596-01 15 76222290 76222290 G A FBXO22 Missense_Mutation p.A232T 0.30 deleterious(0.02) possibly_damaging(0.585) TCGA-34-2596-01 15 78293997 78293997 T C TBC1D2B Missense_Mutation p.Y887C 0.44 deleterious(0.01) benign(0.093) TCGA-34-2596-01 15 79298747 79298747 A T RASGRF1 Missense_Mutation p.V632D 0.24 deleterious(0) possibly_damaging(0.823) TCGA-34-2596-01 15 91425048 91425048 A T FURIN Silent p.S775S 0.39 TCGA-34-2596-01 15 98514533 98514533 A T ARRDC4 3'UTR 0.29 TCGA-34-2596-01 16 17294508 17294508 T G XYLT1 Missense_Mutation p.K306T 0.47 deleterious(0.01) probably_damaging(0.987) TCGA-34-2596-01 16 31235551 31235551 G T TRIM72 Silent p.V303V 0.32 TCGA-34-2596-01 16 4411466 4411466 C T CORO7 Missense_Mutation p.R528Q 0.53 tolerated(0.33) benign(0.002) TCGA-34-2596-01 16 49315138 49315138 C T CBLN1 Missense_Mutation p.R80H 0.36 tolerated(0.05) probably_damaging(0.969) TCGA-34-2596-01 16 56701960 56701960 G T MT1G 5'UTR 0.51 TCGA-34-2596-01 16 57286247 57286247 G T ARL2BP 3'UTR 0.60 TCGA-34-2596-01 16 65319268 65319268 A T LINC00922 RNA 0.38 TCGA-34-2596-01 16 67579917 67579917 G A FAM65A Silent p.L1171L 0.09 TCGA-34-2596-01 16 86602312 86602312 C T FOXC2 Silent p.H457H 0.36 TCGA-34-2596-01 16 89350274 89350274 G C ANKRD11 Missense_Mutation p.S892R 0.45 benign(0.043) TCGA-34-2596-01 16 9857192 9857192 C G GRIN2A Silent p.S1403S 0.51 TCGA-34-2596-01 17 32483431 32483431 G A ASIC2 Missense_Mutation p.R41W 0.05 deleterious(0) probably_damaging(0.995) TCGA-34-2596-01 17 36353621 36353621 C A RP11-1407O15.2 Missense_Mutation p.D414Y 0.13 TCGA-34-2596-01 17 38857508 38857508 C T KRT24 Missense_Mutation p.D247N 0.29 deleterious(0.01) probably_damaging(0.982) TCGA-34-2596-01 17 40705414 40705414 G T HSD17B1 Intron 0.33 TCGA-34-2596-01 17 42092277 42092286 ATCAGCTGCA - TMEM101 Frame_Shift_Del p.L12Sfs*59 0.51 TCGA-34-2596-01 17 42474803 42474803 C T GPATCH8 3'UTR 0.40 TCGA-34-2596-01 17 4574681 4574681 G A PELP1 3'UTR 0.29 TCGA-34-2596-01 17 56320361 56320361 C G LPO Silent p.L7L 0.27 TCGA-34-2596-01 17 58128309 58128309 G T HEATR6 Missense_Mutation p.N773K 0.23 deleterious(0.03) benign(0.002) TCGA-34-2596-01 17 67028385 67028385 A G ABCA9 Missense_Mutation p.F437L 0.31 deleterious(0.01) benign(0.157) TCGA-34-2596-01 17 74013980 74013980 G C EVPL Nonsense_Mutation p.S517* 0.28 TCGA-34-2596-01 17 7577025 7577025 T A TP53 Nonsense_Mutation p.K305* 0.63 TCGA-34-2596-01 17 7834841 7834841 C T TRAPPC1 Silent p.K51K 0.30 TCGA-34-2596-01 17 80828142 80828142 G T TBCD Missense_Mutation p.R454L 0.28 deleterious(0) probably_damaging(0.947) TCGA-34-2596-01 18 28956862 28956862 G C DSG4 5'UTR 0.63 TCGA-34-2596-01 18 30321982 30321982 C A KLHL14 Missense_Mutation p.L326F 0.60 deleterious(0.04) possibly_damaging(0.793) TCGA-34-2596-01 18 346755 346755 C A COLEC12 Missense_Mutation p.Q289H 0.60 deleterious(0) probably_damaging(0.948) TCGA-34-2596-01 18 5395077 5395077 C T EPB41L3 Missense_Mutation p.D1048N 0.57 deleterious(0) probably_damaging(1) TCGA-34-2596-01 18 56585940 56585940 G C ZNF532 Missense_Mutation p.D141H 0.56 tolerated(0.13) probably_damaging(0.998) TCGA-34-2596-01 19 11411822 11411822 G C TSPAN16 Intron 0.29 TCGA-34-2596-01 19 12155941 12155941 A G ZNF878 Missense_Mutation p.L92P 0.38 deleterious(0.04) benign(0.022) TCGA-34-2596-01 19 15132615 15132615 C A CCDC105 Intron 0.27 TCGA-34-2596-01 19 16514640 16514640 C T EPS15L1 Silent p.Q510Q 0.26 TCGA-34-2596-01 19 20976799 20976799 G A ZNF66 Intron 0.21 TCGA-34-2596-01 19 21608658 21608658 C A ZNF493 3'UTR 0.25 TCGA-34-2596-01 19 22817252 22817252 A T ZNF492 5'UTR 0.41 TCGA-34-2596-01 19 35823511 35823511 C T CD22 Silent p.L32L 0.24 TCGA-34-2596-01 19 36050967 36050967 G T ATP4A Missense_Mutation p.Q266K 0.29 tolerated(0.41) benign(0.014) TCGA-34-2596-01 19 36322217 36322217 C A NPHS1 Missense_Mutation p.R1123L 0.27 tolerated(0.4) benign(0.003) TCGA-34-2596-01 19 36499208 36499208 C T SYNE4 Missense_Mutation p.G64R 0.20 tolerated_low_confidence(0.13) probably_damaging(0.996) TCGA-34-2596-01 19 39329235 39329235 G A HNRNPL Silent p.V453V 0.30 TCGA-34-2596-01 19 39805491 39805491 G A LRFN1 Silent p.S162S 0.25 TCGA-34-2596-01 19 39847546 39847546 G A SAMD4B Missense_Mutation p.D5N 0.15 deleterious(0) probably_damaging(0.994) TCGA-34-2596-01 19 41120238 41120238 G C LTBP4 Missense_Mutation p.E967Q 0.31 tolerated(0.06) probably_damaging(0.984) TCGA-34-2596-01 19 41120242 41120242 G T LTBP4 Missense_Mutation p.R968L 0.32 tolerated(0.28) benign(0.025) TCGA-34-2596-01 19 41120337 41120337 G A LTBP4 Missense_Mutation p.E1000K 0.21 deleterious(0.04) benign(0.325) TCGA-34-2596-01 19 41596057 41596057 A T CYP2A13 Missense_Mutation p.Q150L 0.16 tolerated(0.07) benign(0.004) TCGA-34-2596-01 19 42752689 42752689 G C ERF Silent p.L525L 0.23 TCGA-34-2596-01 19 44933863 44933863 G C ZNF229 Missense_Mutation p.L365V 0.24 tolerated(0.51) possibly_damaging(0.836) TCGA-34-2596-01 19 46328447 46328447 C T SYMPK Silent p.L824L 0.35 TCGA-34-2596-01 19 51920496 51920496 C A SIGLEC10 Silent p.R87R 0.24 TCGA-34-2596-01 19 51920497 51920497 C A SIGLEC10 Missense_Mutation p.R87L 0.24 deleterious(0.02) benign(0.063) TCGA-34-2596-01 19 53959386 53959386 G C ZNF761 RNA 0.03 TCGA-34-2596-01 19 54567115 54567115 C A VSTM1 5'UTR 0.34 TCGA-34-2596-01 19 55785929 55785929 C A HSPBP1 Silent p.A159A 0.25 TCGA-34-2596-01 19 56572922 56572922 C G NLRP5 3'UTR 0.33 TCGA-34-2596-01 19 56600255 56600255 A T ZNF787 Missense_Mutation p.C96S 0.24 deleterious(0) probably_damaging(0.999) TCGA-34-2596-01 19 57966810 57966810 G T VN1R1 Missense_Mutation p.L349M 0.31 tolerated(0.33) benign(0.017) TCGA-34-2596-01 19 7082904 7082904 G C ZNF557 Missense_Mutation p.G148R 0.27 deleterious(0.04) benign(0.337) TCGA-34-2596-01 19 8808393 8808393 C T ACTL9 Missense_Mutation p.R220H 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-34-2596-01 19 9048969 9048969 C A MUC16 Missense_Mutation p.V10888L 0.32 benign(0.001) TCGA-34-2596-01 19 9071041 9071041 G A MUC16 Missense_Mutation p.P5469S 0.26 unknown(0) TCGA-34-2596-01 1 108918833 108918834 - A NBPF6 Intron 0.25 TCGA-34-2596-01 1 110085584 110085584 T A GPR61 5'UTR 0.43 TCGA-34-2596-01 1 12887243 12887243 G C PRAMEF11 Missense_Mutation p.S205C 0.41 tolerated(0.05) benign(0.048) TCGA-34-2596-01 1 152284369 152284369 G T FLG Missense_Mutation p.S998Y 0.33 probably_damaging(0.997) TCGA-34-2596-01 1 154919185 154919185 G A PBXIP1 Missense_Mutation p.A322V 0.18 tolerated(0.07) possibly_damaging(0.693) TCGA-34-2596-01 1 155911970 155911970 G C RXFP4 Missense_Mutation p.W157S 0.26 tolerated(0.52) benign(0.258) TCGA-34-2596-01 1 156646867 156646867 G C NES Missense_Mutation p.R64G 0.37 deleterious(0) probably_damaging(1) TCGA-34-2596-01 1 158152847 158152847 C T CD1D Missense_Mutation p.L263F 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-34-2596-01 1 159898366 159898366 C G IGSF9 Missense_Mutation p.D938H 0.21 deleterious(0) possibly_damaging(0.863) TCGA-34-2596-01 1 165533067 165533067 A G LRRC52 3'UTR 0.31 TCGA-34-2596-01 1 16577801 16577801 C G FBXO42 Silent p.L506L 0.45 TCGA-34-2596-01 1 167382320 167382320 A G POU2F1 Silent p.L653L 0.31 TCGA-34-2596-01 1 172628317 172628317 G A FASLG 5'UTR 0.27 TCGA-34-2596-01 1 173628500 173628500 C - ANKRD45 Frame_Shift_Del p.E20Rfs*29 0.28 TCGA-34-2596-01 1 178834180 178834180 A T ANGPTL1 Silent p.G244G 0.30 TCGA-34-2596-01 1 182992985 182992985 G T LAMC1 Missense_Mutation p.G45V 0.30 deleterious(0) probably_damaging(0.927) TCGA-34-2596-01 1 183861272 183861272 A T RGL1 Missense_Mutation p.T408S 0.28 tolerated(0.49) probably_damaging(0.982) TCGA-34-2596-01 1 190067631 190067631 C A BRINP3 Missense_Mutation p.Q606H 0.27 deleterious(0) possibly_damaging(0.459) TCGA-34-2596-01 1 203455842 203455842 G A PRELP Missense_Mutation p.G328R 0.21 tolerated(0.05) probably_damaging(0.919) TCGA-34-2596-01 1 203743919 203743919 C T LAX1 3'UTR 0.21 TCGA-34-2596-01 1 216219838 216219838 T A USH2A Missense_Mutation p.Q2087L 0.26 benign(0.258) TCGA-34-2596-01 1 236399444 236399444 C G ERO1LB Intron 0.40 TCGA-34-2596-01 1 240371017 240371017 C A FMN2 Missense_Mutation p.P969T 0.38 unknown(0) TCGA-34-2596-01 1 247655202 247655202 G T OR2W5 RNA 0.33 TCGA-34-2596-01 1 248487855 248487855 G C OR2M7 Missense_Mutation p.Q6E 0.30 tolerated(0.19) benign(0.005) TCGA-34-2596-01 1 248685544 248685544 C T OR2G6 Silent p.L199L 0.19 TCGA-34-2596-01 1 248756807 248756807 T A OR2T10 Missense_Mutation p.K88I 0.28 deleterious(0.01) benign(0.04) TCGA-34-2596-01 1 43213039 43213039 T A LEPRE1 Silent p.S653S 0.47 TCGA-34-2596-01 1 62739201 62739201 G T KANK4 Silent p.G525G 0.52 TCGA-34-2596-01 1 6512048 6512048 C T ESPN Silent p.L739L 0.35 TCGA-34-2596-01 1 6640608 6640608 C G ZBTB48 5'UTR 0.57 TCGA-34-2596-01 1 70639152 70639152 G T LRRC40 Silent p.I369I 0.31 TCGA-34-2596-01 1 86622232 86622232 G T COL24A1 5'UTR 0.38 TCGA-34-2596-01 1 9804684 9804684 C T CLSTN1 Missense_Mutation p.A335T 0.46 tolerated(0.65) benign(0.003) TCGA-34-2596-01 1 99358583 99358583 A T LPPR5 3'UTR 0.32 TCGA-34-2596-01 20 13869147 13869147 A C SEL1L2 Missense_Mutation p.F187L 0.23 tolerated(0.07) benign(0.032) TCGA-34-2596-01 20 16492131 16492131 C A KIF16B Missense_Mutation p.R163L 0.29 deleterious(0) probably_damaging(0.999) TCGA-34-2596-01 20 31291229 31291229 C A COMMD7 Silent p.L186L 0.22 TCGA-34-2596-01 20 31577456 31577456 C A SUN5 Nonsense_Mutation p.E195* 0.22 TCGA-34-2596-01 20 42271136 42271136 G A IFT52 Missense_Mutation p.E380K 0.23 deleterious(0) probably_damaging(0.971) TCGA-34-2596-01 20 44521454 44521454 T G CTSA Missense_Mutation p.Y197D 0.32 deleterious(0) probably_damaging(1) TCGA-34-2596-01 20 57251323 57251323 C G STX16 Silent p.V318V 0.36 TCGA-34-2596-01 20 61936824 61936824 G T COL20A1 Silent p.G83G 0.12 TCGA-34-2596-01 20 9438113 9438113 C G PLCB4 Missense_Mutation p.L1005V 0.24 tolerated(0.11) possibly_damaging(0.797) TCGA-34-2596-01 21 42064818 42064818 G T DSCAM Silent p.V142V 0.55 TCGA-34-2596-01 22 20720871 20720871 C T USP41 Missense_Mutation p.D293N 0.22 tolerated(0.16) benign(0.029) TCGA-34-2596-01 22 22316909 22316909 C A TOP3B Missense_Mutation p.G473C 0.29 deleterious(0) probably_damaging(0.998) TCGA-34-2596-01 22 22453448 22453448 C A IGLV8-61 Missense_Mutation p.T65N 0.24 tolerated(0.13) benign(0.229) TCGA-34-2596-01 22 24718188 24718188 C T SPECC1L Missense_Mutation p.L414F 0.37 deleterious(0) probably_damaging(0.999) TCGA-34-2596-01 22 31722878 31722878 C G PATZ1 Nonstop_Mutation p.*688Sext*30 0.33 TCGA-34-2596-01 22 39917481 39917481 G C ATF4 Missense_Mutation p.V11L 0.18 tolerated_low_confidence(0.28) possibly_damaging(0.634) TCGA-34-2596-01 22 42607698 42607698 C T TCF20 Missense_Mutation p.G1205E 0.38 probably_damaging(0.916) TCGA-34-2596-01 22 46726082 46726082 C G GTSE1 3'UTR 0.14 TCGA-34-2596-01 2 103334846 103334846 C T MFSD9 3'UTR 0.40 TCGA-34-2596-01 2 106710576 106710576 T A UXS1 Missense_Mutation p.Y395F 0.07 tolerated(0.07) benign(0.17) TCGA-34-2596-01 2 107450571 107450571 A G ST6GAL2 Silent p.S325S 0.05 TCGA-34-2596-01 2 128384551 128384551 C A MYO7B Missense_Mutation p.A1380D 0.39 deleterious(0.02) possibly_damaging(0.556) TCGA-34-2596-01 2 131099774 131099774 C G CCDC115 5'UTR 0.71 TCGA-34-2596-01 2 133540268 133540268 G A NCKAP5 Silent p.I1372I 0.38 TCGA-34-2596-01 2 141625807 141625807 C A LRP1B Missense_Mutation p.A1399S 0.05 benign(0.013) TCGA-34-2596-01 2 162719517 162719517 T C SLC4A10 Silent p.R237R 0.39 TCGA-34-2596-01 2 170366566 170366566 C T KLHL41 Missense_Mutation p.S93F 0.03 deleterious(0) probably_damaging(0.981) TCGA-34-2596-01 2 170592599 170592599 A T KLHL23 Missense_Mutation p.R359W 0.39 deleterious(0) probably_damaging(1) TCGA-34-2596-01 2 178098959 178098959 T C NFE2L2 Missense_Mutation p.D29G 0.25 deleterious(0) probably_damaging(1) TCGA-34-2596-01 2 179400809 179400809 G T TTN Silent p.L33555L 0.36 TCGA-34-2596-01 2 179414546 179414546 C A TTN Nonsense_Mutation p.E30635* 0.29 TCGA-34-2596-01 2 179428441 179428441 G C TTN Missense_Mutation p.P27473R 0.03 TCGA-34-2596-01 2 179441390 179441390 A T TTN Missense_Mutation p.V23194D 0.29 TCGA-34-2596-01 2 179463280 179463280 C T TTN Missense_Mutation p.G19022R 0.27 TCGA-34-2596-01 2 179468995 179468995 C T TTN Missense_Mutation p.R18140Q 0.31 TCGA-34-2596-01 2 179582750 179582750 T C TTN Missense_Mutation p.H8328R 0.32 TCGA-34-2596-01 2 179610863 179610863 G T TTN Intron 0.26 TCGA-34-2596-01 2 179664562 179664562 C G TTN Missense_Mutation p.R220P 0.28 TCGA-34-2596-01 2 185801452 185801460 GCTGGTTTA - ZNF804A In_Frame_Del p.M443_Y446delinsI 0.34 TCGA-34-2596-01 2 185801730 185801730 G A ZNF804A Missense_Mutation p.C536Y 0.31 tolerated(0.11) benign(0.001) TCGA-34-2596-01 2 185802102 185802102 C G ZNF804A Missense_Mutation p.P660R 0.32 tolerated(0.16) benign(0.165) TCGA-34-2596-01 2 196651817 196651817 C A DNAH7 Missense_Mutation p.G3599W 0.38 deleterious(0) probably_damaging(1) TCGA-34-2596-01 2 203379617 203379617 G A BMPR2 Missense_Mutation p.R179H 0.32 tolerated(0.18) benign(0.026) TCGA-34-2596-01 2 228137730 228137730 A T COL4A3 Silent p.G608G 0.23 TCGA-34-2596-01 2 230650556 230650556 C G TRIP12 Missense_Mutation p.E1596Q 0.35 tolerated(0.18) benign(0.084) TCGA-34-2596-01 2 231265979 231265979 G C SP140L Intron 0.34 TCGA-34-2596-01 2 25457255 25457255 A G DNMT3A Missense_Mutation p.S878P 0.33 deleterious(0) probably_damaging(0.997) TCGA-34-2596-01 2 27800362 27800362 C G C2orf16 Missense_Mutation p.S308C 0.29 tolerated(0.13) benign(0.067) TCGA-34-2596-01 2 31637530 31637530 C G XDH Translation_Start_Site p.M1? 0.26 deleterious(0.02) probably_damaging(0.958) TCGA-34-2596-01 2 3200790 3200790 T A TSSC1 Splice_Site p.X173_splice 0.32 TCGA-34-2596-01 2 33787937 33787937 T A RASGRP3 3'UTR 0.25 TCGA-34-2596-01 2 37076533 37076533 C G STRN 3'UTR 0.08 TCGA-34-2596-01 2 46985978 46985978 C A SOCS5 Silent p.T103T 0.42 TCGA-34-2596-01 2 48573599 48573599 T C FOXN2 Silent p.V82V 0.44 TCGA-34-2596-01 2 63176065 63176065 G T EHBP1 Missense_Mutation p.S730I 0.21 tolerated_low_confidence(0.16) benign(0.001) TCGA-34-2596-01 2 74652601 74652601 G A WDR54 Missense_Mutation p.E286K 0.48 tolerated(0.18) benign(0.002) TCGA-34-2596-01 2 80530563 80530564 - T LRRTM1 Frame_Shift_Ins p.L128Tfs*83 0.36 TCGA-34-2596-01 2 89459382 89459382 G A IGKV6-21 Silent p.L65L 0.28 TCGA-34-2596-01 3 109026913 109026913 A C DPPA2 Silent p.P208P 0.45 TCGA-34-2596-01 3 109028125 109028125 G T DPPA2 Nonsense_Mutation p.C78* 0.24 TCGA-34-2596-01 3 121415351 121415351 T A GOLGB1 Missense_Mutation p.K1340I 0.41 probably_damaging(0.999) TCGA-34-2596-01 3 121515990 121515990 A G IQCB1 Missense_Mutation p.M284T 0.35 tolerated(0.39) benign(0) TCGA-34-2596-01 3 122880801 122880801 G T PDIA5 Missense_Mutation p.E518D 0.12 deleterious_low_confidence(0) benign(0.106) TCGA-34-2596-01 3 126261459 126261459 C T CHST13 3'UTR 0.29 TCGA-34-2596-01 3 129547191 129547191 C T TMCC1 Missense_Mutation p.E11K 0.19 deleterious_low_confidence(0.02) benign(0.03) TCGA-34-2596-01 3 132211375 132211375 C T DNAJC13 Silent p.L1247L 0.31 TCGA-34-2596-01 3 133119036 133119036 G A BFSP2 Missense_Mutation p.E37K 0.16 tolerated(0.11) benign(0.119) TCGA-34-2596-01 3 137892435 137892435 G A DBR1 Silent p.L77L 0.22 TCGA-34-2596-01 3 138023787 138023787 T A NME9 Missense_Mutation p.D179V 0.34 deleterious(0.04) possibly_damaging(0.662) TCGA-34-2596-01 3 150644620 150644620 G T CLRN1 3'Flank 0.20 TCGA-34-2596-01 3 155206555 155206555 T A PLCH1 Silent p.V799V 0.17 TCGA-34-2596-01 3 157081367 157081367 T A VEPH1 Silent p.S507S 0.15 TCGA-34-2596-01 3 167293742 167293742 T A WDR49 Silent p.A150A 0.37 TCGA-34-2596-01 3 170009717 170009717 G A PRKCI Missense_Mutation p.G427R 0.35 tolerated(0.05) probably_damaging(1) TCGA-34-2596-01 3 184075201 184075201 T A CLCN2 Missense_Mutation p.T283S 0.19 deleterious(0) probably_damaging(0.999) TCGA-34-2596-01 3 186459738 186459738 G T KNG1 Missense_Mutation p.G518V 0.20 deleterious(0.01) benign(0.383) TCGA-34-2596-01 3 193333491 193333491 C T OPA1 Missense_Mutation p.P127L 0.14 deleterious(0) possibly_damaging(0.893) TCGA-34-2596-01 3 196387697 196387697 C G NRROS Missense_Mutation p.P395A 0.21 tolerated(0.79) benign(0.015) TCGA-34-2596-01 3 2908505 2908505 A T CNTN4 Missense_Mutation p.E175V 0.46 tolerated(0.09) benign(0.038) TCGA-34-2596-01 3 33431728 33431728 G A UBP1 3'UTR 0.22 TCGA-34-2596-01 3 36898648 36898648 G A TRANK1 Silent p.I811I 0.49 TCGA-34-2596-01 3 38053094 38053094 T C PLCD1 Missense_Mutation p.N188D 0.21 tolerated(0.76) benign(0.001) TCGA-34-2596-01 3 40285962 40285962 A G MYRIP Missense_Mutation p.Y709C 0.56 deleterious(0) probably_damaging(1) TCGA-34-2596-01 3 50332669 50332669 C A HYAL3 Missense_Mutation p.G122V 0.48 deleterious(0) probably_damaging(1) TCGA-34-2596-01 4 110897250 110897250 A T EGF Missense_Mutation p.S638C 0.44 deleterious(0) probably_damaging(0.987) TCGA-34-2596-01 4 111441213 111441213 G - ENPEP Frame_Shift_Del p.A521Qfs*11 0.29 TCGA-34-2596-01 4 173730674 173730674 T A GALNTL6 Missense_Mutation p.V239E 0.41 deleterious(0.02) possibly_damaging(0.845) TCGA-34-2596-01 4 248368 248368 C G ZNF876P RNA 0.17 TCGA-34-2596-01 4 57333819 57333820 - G SRP72 Frame_Shift_Ins p.V9Gfs*9 0.19 TCGA-34-2596-01 4 62453084 62453084 T C LPHN3 Silent p.I65I 0.35 TCGA-34-2596-01 4 70921290 70921290 C G HTN1 3'UTR 0.47 TCGA-34-2596-01 4 71255615 71255615 G T SMR3B 3'UTR 0.42 TCGA-34-2596-01 4 8372694 8372694 C G ACOX3 Missense_Mutation p.D642H 0.34 deleterious(0.01) probably_damaging(1) TCGA-34-2596-01 5 109106207 109106207 C T MAN2A1 Silent p.P387P 0.41 TCGA-34-2596-01 5 134910301 134910301 C T CXCL14 Missense_Mutation p.R94H 0.34 deleterious(0.02) benign(0.317) TCGA-34-2596-01 5 140590646 140590646 G - PCDHB12 Frame_Shift_Del p.G723Vfs*17 0.34 TCGA-34-2596-01 5 140774454 140774454 T C PCDHGA8 Missense_Mutation p.Y692H 0.49 deleterious_low_confidence(0.03) possibly_damaging(0.491) TCGA-34-2596-01 5 145199571 145199571 T C PRELID2 Silent p.T48T 0.48 TCGA-34-2596-01 5 145439657 145439657 C T SH3RF2 Missense_Mutation p.S595F 0.49 deleterious(0) possibly_damaging(0.664) TCGA-34-2596-01 5 145895656 145895656 T C GPR151 Silent p.A7A 0.44 TCGA-34-2596-01 5 172539351 172539351 A T CREBRF Missense_Mutation p.K550N 0.32 deleterious(0) probably_damaging(0.997) TCGA-34-2596-01 5 178418943 178418943 C A GRM6 Missense_Mutation p.V216L 0.44 deleterious(0) probably_damaging(1) TCGA-34-2596-01 5 179554659 179554659 C G RASGEF1C Missense_Mutation p.E222Q 0.42 deleterious(0.02) possibly_damaging(0.706) TCGA-34-2596-01 5 37307492 37307492 G A NUP155 Missense_Mutation p.A937V 0.30 deleterious(0) probably_damaging(1) TCGA-34-2596-01 5 41160404 41160404 C A C6 Missense_Mutation p.R508S 0.29 deleterious(0.02) possibly_damaging(0.597) TCGA-34-2596-01 5 43175067 43175067 C A ZNF131 Silent p.T534T 0.24 TCGA-34-2596-01 5 635485 635485 A G CEP72 Splice_Site p.X231_splice 0.33 TCGA-34-2596-01 5 6755083 6755083 C T PAPD7 3'UTR 0.25 TCGA-34-2596-01 6 127517208 127517208 A C RSPO3 3'UTR 0.42 TCGA-34-2596-01 6 159653353 159653353 C T FNDC1 Silent p.S603S 0.54 TCGA-34-2596-01 6 160679418 160679418 G A SLC22A2 Silent p.D124D 0.37 TCGA-34-2596-01 6 169648567 169648567 G T THBS2 Missense_Mutation p.A185E 0.49 deleterious(0.04) benign(0.106) TCGA-34-2596-01 6 170597490 170597490 C T DLL1 Silent p.T169T 0.45 TCGA-34-2596-01 6 28554507 28554507 C A SCAND3 5'UTR 0.34 TCGA-34-2596-01 6 31556771 31556771 G A NCR3 3'UTR 0.33 TCGA-34-2596-01 6 33281012 33281012 G C TAPBP Missense_Mutation p.L151V 0.31 tolerated(0.23) benign(0.004) TCGA-34-2596-01 6 34508830 34508830 C A SPDEF Nonsense_Mutation p.E189* 0.57 TCGA-34-2596-01 6 43267162 43267162 G C SLC22A7 Missense_Mutation p.R145T 0.35 tolerated(0.08) benign(0.016) TCGA-34-2596-01 6 63990303 63990303 C G LGSN Missense_Mutation p.G385R 0.37 deleterious(0) probably_damaging(0.989) TCGA-34-2596-01 6 70852701 70852701 C A COL19A1 Missense_Mutation p.P539T 0.51 tolerated(0.07) benign(0.076) TCGA-34-2596-01 6 88853388 88853388 G A CNR1 3'UTR 0.42 TCGA-34-2596-01 6 93967179 93967179 C A EPHA7 Splice_Site p.X724_splice 0.42 TCGA-34-2596-01 7 100319236 100319236 C G EPO Silent p.L23L 0.31 TCGA-34-2596-01 7 100551264 100551264 C G MUC3A Silent p.V5V 0.26 TCGA-34-2596-01 7 103206705 103206705 A G RELN Silent p.S1634S 0.04 TCGA-34-2596-01 7 138252398 138252398 A C TRIM24 Missense_Mutation p.Q568P 0.18 tolerated(0.22) probably_damaging(0.937) TCGA-34-2596-01 7 140494110 140494110 C G BRAF Missense_Mutation p.D380H 0.64 deleterious(0.01) possibly_damaging(0.646) TCGA-34-2596-01 7 141443496 141443496 A T SSBP1 Missense_Mutation p.Q74L 0.25 tolerated(0.08) benign(0.02) TCGA-34-2596-01 7 143771480 143771480 C A OR2A25 Silent p.T56T 0.46 TCGA-34-2596-01 7 150698697 150698697 A G NOS3 Silent p.E498E 0.37 TCGA-34-2596-01 7 158704301 158704302 - T WDR60 Frame_Shift_Ins p.L508Ffs*8 0.33 TCGA-34-2596-01 7 18767272 18767272 G C HDAC9 Missense_Mutation p.D601H 0.25 tolerated(0.11) benign(0.28) TCGA-34-2596-01 7 21747435 21747435 G C DNAH11 Missense_Mutation p.R2229P 0.19 probably_damaging(0.998) TCGA-34-2596-01 7 21747436 21747436 A T DNAH11 Silent p.R2229R 0.19 TCGA-34-2596-01 7 21941782 21941782 T C CDCA7L 3'UTR 0.29 TCGA-34-2596-01 7 2294689 2294689 C A SNX8 3'UTR 0.25 TCGA-34-2596-01 7 23205516 23205516 C T KLHL7 Missense_Mutation p.A379V 0.44 tolerated(1) benign(0.139) TCGA-34-2596-01 7 38457496 38457496 C A AMPH Missense_Mutation p.A443S 0.25 tolerated(0.34) benign(0.043) TCGA-34-2596-01 7 45113885 45113885 C T CCM2 Missense_Mutation p.S332L 0.35 deleterious(0.03) probably_damaging(0.958) TCGA-34-2596-01 7 50530953 50530953 G T DDC Missense_Mutation p.D473E 0.34 tolerated(1) benign(0.001) TCGA-34-2596-01 7 63538205 63538205 G C ZNF727 Missense_Mutation p.E260Q 0.24 deleterious(0.03) probably_damaging(0.977) TCGA-34-2596-01 7 88964016 88964016 G T ZNF804B Nonsense_Mutation p.E574* 0.26 TCGA-34-2596-01 7 93106944 93106944 C T CALCR Missense_Mutation p.C99Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-34-2596-01 8 100779175 100779175 T C VPS13B Silent p.S2433S 0.37 TCGA-34-2596-01 8 101105711 101105711 G C RGS22 Missense_Mutation p.F27L 0.41 tolerated(1) benign(0.004) TCGA-34-2596-01 8 105361290 105361290 C A DCSTAMP Silent p.T170T 0.36 TCGA-34-2596-01 8 106814025 106814025 G T ZFPM2 Missense_Mutation p.S572I 0.27 deleterious(0) probably_damaging(0.98) TCGA-34-2596-01 8 134254284 134254284 C T NDRG1 Missense_Mutation p.V309M 0.34 deleterious(0.01) probably_damaging(0.952) TCGA-34-2596-01 8 139158241 139158241 A T FAM135B Silent p.P1167P 0.12 TCGA-34-2596-01 8 38961179 38961179 G A ADAM9 Missense_Mutation p.R807H 0.27 deleterious(0) probably_damaging(0.994) TCGA-34-2596-01 8 67547090 67547090 C T VCPIP1 Silent p.Q1105Q 0.33 TCGA-34-2596-01 8 68140281 68140281 C G ARFGEF1 Missense_Mutation p.V1170L 0.10 deleterious(0) possibly_damaging(0.882) TCGA-34-2596-01 8 73480279 73480279 C T KCNB2 Missense_Mutation p.R104W 0.32 deleterious(0) probably_damaging(1) TCGA-34-2596-01 8 87076470 87076470 A G PSKH2 Silent p.Y192Y 0.08 TCGA-34-2596-01 9 101824556 101824556 C A COL15A1 Missense_Mutation p.D1187E 0.29 tolerated(0.13) probably_damaging(0.987) TCGA-34-2596-01 9 114184296 114184296 G C KIAA0368 Missense_Mutation p.Q632E 0.32 deleterious(0.01) possibly_damaging(0.774) TCGA-34-2596-01 9 118997697 118997697 C G PAPPA Missense_Mutation p.P838R 0.26 deleterious(0) possibly_damaging(0.804) TCGA-34-2596-01 9 125487040 125487040 T C OR1L4 Missense_Mutation p.Y258H 0.29 tolerated(0.52) probably_damaging(1) TCGA-34-2596-01 9 134136488 134136488 G C FAM78A Silent p.T191T 0.25 TCGA-34-2596-01 9 135202804 135202804 G A SETX Missense_Mutation p.S1394L 0.36 tolerated(0.38) benign(0.003) TCGA-34-2596-01 9 21971036 21971036 C A CDKN2A Missense_Mutation p.D108Y 0.48 deleterious(0) probably_damaging(1) TCGA-34-2596-01 9 40772000 40772000 C A ZNF658 3'UTR 0.33 TCGA-34-2596-01 9 73236184 73236184 T C TRPM3 Silent p.K593K 0.26 TCGA-34-2596-01 9 79320513 79320513 G C PRUNE2 Missense_Mutation p.P2226R 0.31 tolerated(0.06) benign(0.157) TCGA-34-2596-01 9 90501062 90501062 G A SPATA31E1 Missense_Mutation p.E554K 0.34 tolerated(0.21) benign(0.054) TCGA-34-2596-01 9 93375779 93375779 C A DIRAS2 Missense_Mutation p.V111L 0.30 tolerated(1) benign(0.004) TCGA-34-2596-01 9 95050532 95050532 G A IARS Missense_Mutation p.T51I 0.34 deleterious(0) probably_damaging(1) TCGA-34-2596-01 X 102931645 102931645 C A MORF4L2 Missense_Mutation p.R104L 0.65 deleterious(0.01) possibly_damaging(0.622) TCGA-34-2596-01 X 135428802 135428802 C T GPR112 Silent p.S979S 0.63 TCGA-34-2596-01 X 150891157 150891157 C A FATE1 Missense_Mutation p.H160N 0.66 tolerated(0.08) benign(0.011) TCGA-34-2596-01 X 31196890 31196890 G A DMD Silent p.A3373A 0.61 TCGA-34-2596-01 X 44109544 44109544 G A EFHC2 Missense_Mutation p.H252Y 0.51 deleterious(0.04) possibly_damaging(0.566) TCGA-34-2596-01 X 49075166 49075166 C T CACNA1F Missense_Mutation p.R932H 0.50 deleterious(0) benign(0.015) TCGA-34-2596-01 X 54565513 54565513 G C GNL3L Missense_Mutation p.K20N 0.61 deleterious_low_confidence(0.01) benign(0.193) TCGA-34-2600-01 10 101190260 101190260 G T GOT1 Silent p.L21L 0.07 TCGA-34-2600-01 10 103920360 103920360 G C NOLC1 Silent p.L417L 0.27 TCGA-34-2600-01 10 103921374 103921374 G A NOLC1 Silent p.K601K 0.25 TCGA-34-2600-01 10 103921912 103921912 G A NOLC1 Silent p.L662L 0.25 TCGA-34-2600-01 10 105363329 105363329 C T SH3PXD2A Missense_Mutation p.R521Q 0.16 tolerated(0.67) benign(0.001) TCGA-34-2600-01 10 105677328 105677328 C A OBFC1 Nonsense_Mutation p.E9* 0.55 TCGA-34-2600-01 10 123278324 123278324 G C FGFR2 Missense_Mutation p.S320C 0.11 deleterious(0) possibly_damaging(0.485) TCGA-34-2600-01 10 132965127 132965127 C T TCERG1L Missense_Mutation p.R293Q 0.21 deleterious(0.03) benign(0.075) TCGA-34-2600-01 10 132965137 132965137 C T TCERG1L Missense_Mutation p.E290K 0.23 deleterious(0.04) benign(0.059) TCGA-34-2600-01 10 16553350 16553350 G A PTER 3'UTR 0.53 TCGA-34-2600-01 10 29811396 29811396 G A SVIL Missense_Mutation p.T1111M 0.07 tolerated(0.24) benign(0.029) TCGA-34-2600-01 10 30317688 30317688 C G KIAA1462 Silent p.P463P 0.22 TCGA-34-2600-01 10 31810369 31810369 A G ZEB1 Silent p.T703T 0.62 TCGA-34-2600-01 10 34636982 34636982 C T PARD3 Missense_Mutation p.R710K 0.05 tolerated(0.21) benign(0.011) TCGA-34-2600-01 10 43288533 43288533 G T BMS1 Missense_Mutation p.G344C 0.29 deleterious(0) probably_damaging(0.959) TCGA-34-2600-01 10 43317572 43317572 G A BMS1 Silent p.V1024V 0.24 TCGA-34-2600-01 10 54074182 54074182 G C DKK1 5'UTR 0.05 TCGA-34-2600-01 10 61564231 61564231 G T CCDC6 Missense_Mutation p.S351Y 0.48 deleterious(0) probably_damaging(0.99) TCGA-34-2600-01 10 71658503 71658503 A C COL13A1 Missense_Mutation p.K255N 0.39 tolerated(0.83) benign(0.073) TCGA-34-2600-01 10 74322751 74322751 C G MICU1 Missense_Mutation p.D78H 0.24 deleterious(0.03) benign(0.001) TCGA-34-2600-01 10 7763616 7763616 A T ITIH2 Missense_Mutation p.H248L 0.53 deleterious(0) probably_damaging(0.978) TCGA-34-2600-01 10 82112198 82112198 G C DYDC2 Intron 0.05 TCGA-34-2600-01 10 92508643 92508643 A G HTR7 Silent p.H416H 0.22 TCGA-34-2600-01 10 96033438 96033438 A G PLCE1 Silent p.L1542L 0.23 TCGA-34-2600-01 10 97779121 97779121 G C CC2D2B Intron 0.25 TCGA-34-2600-01 11 1017189 1017189 G C MUC6 Nonsense_Mutation p.S1871* 0.04 TCGA-34-2600-01 11 1104220 1104220 C T MUC2 Missense_Mutation p.S2804F 0.16 unknown(0) TCGA-34-2600-01 11 115102104 115102104 G A CADM1 Silent p.I177I 0.30 TCGA-34-2600-01 11 117062730 117062730 G C SIDT2 Silent p.V624V 0.75 TCGA-34-2600-01 11 124294657 124294657 G A OR8B4 Silent p.F37F 0.11 TCGA-34-2600-01 11 124413109 124413109 A G OR8B12 Missense_Mutation p.Y148H 0.76 deleterious_low_confidence(0) benign(0.163) TCGA-34-2600-01 11 16760341 16760341 G C C11orf58 Missense_Mutation p.E6Q 0.18 deleterious(0.02) possibly_damaging(0.509) TCGA-34-2600-01 11 17099301 17099301 G A RPS13 5'UTR 0.27 TCGA-34-2600-01 11 1977643 1977643 G T MRPL23 Missense_Mutation p.G152V 0.92 deleterious(0.04) probably_damaging(0.929) TCGA-34-2600-01 11 20065530 20065530 G A NAV2 Missense_Mutation p.D994N 0.79 deleterious(0.03) probably_damaging(0.996) TCGA-34-2600-01 11 533875 533875 G T HRAS Missense_Mutation p.Q61K 0.24 deleterious(0.02) benign(0.046) TCGA-34-2600-01 11 5462615 5462615 T A OR51I1 Missense_Mutation p.N44Y 0.87 deleterious(0) probably_damaging(0.999) TCGA-34-2600-01 11 55136358 55136358 A T OR4A15 Missense_Mutation p.K333N 0.84 tolerated_low_confidence(0.22) benign(0.026) TCGA-34-2600-01 11 55761942 55761942 G A OR5F1 Nonsense_Mutation p.Q54* 0.80 TCGA-34-2600-01 11 5776473 5776473 T A OR52N4 Missense_Mutation p.L168Q 0.88 deleterious(0.01) probably_damaging(0.999) TCGA-34-2600-01 11 5799007 5799007 C A OR52N5 Silent p.V286V 0.84 TCGA-34-2600-01 11 59939622 59939622 C A MS4A6A 3'Flank 0.77 TCGA-34-2600-01 11 64056748 64056748 C G GPR137 Missense_Mutation p.L447V 0.12 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-34-2600-01 11 68575083 68575083 T G CPT1A Missense_Mutation p.K102T 0.78 tolerated(0.32) benign(0.01) TCGA-34-2600-01 11 93803539 93803539 G T HEPHL1 Splice_Site p.X355_splice 0.91 TCGA-34-2600-01 12 100732613 100732613 A G SCYL2 Missense_Mutation p.N818S 0.53 tolerated(1) benign(0) TCGA-34-2600-01 12 104100623 104100623 G A STAB2 Silent p.G1350G 0.48 TCGA-34-2600-01 12 113552694 113552694 G T RASAL1 Missense_Mutation p.H364Q 0.30 deleterious(0.04) probably_damaging(1) TCGA-34-2600-01 12 114837386 114837386 C T TBX5 Silent p.T98T 0.04 TCGA-34-2600-01 12 122669262 122669262 C T LRRC43 Missense_Mutation p.P116L 0.11 deleterious(0) probably_damaging(1) TCGA-34-2600-01 12 12653560 12653560 G C DUSP16 Missense_Mutation p.L142V 0.17 tolerated(0.1) benign(0.005) TCGA-34-2600-01 12 132502177 132502177 C T EP400 Missense_Mutation p.R1341W 0.07 unknown(0) TCGA-34-2600-01 12 132626392 132626392 T C DDX51 Intron 0.57 TCGA-34-2600-01 12 14019133 14019133 T C GRIN2B Missense_Mutation p.R4G 0.69 tolerated_low_confidence(0.11) benign(0) TCGA-34-2600-01 12 15747918 15747918 G A PTPRO Silent p.K1198K 0.25 TCGA-34-2600-01 12 20783030 20783030 C G PDE3A Missense_Mutation p.Q577E 0.27 tolerated(0.08) benign(0.017) TCGA-34-2600-01 12 21205082 21205082 G T SLCO1B7 Nonsense_Mutation p.E415* 0.21 TCGA-34-2600-01 12 30806004 30806004 G A IPO8 Silent p.S657S 0.28 TCGA-34-2600-01 12 48919625 48919625 C G OR8S1 Missense_Mutation p.L71V 0.19 tolerated(0.06) benign(0.259) TCGA-34-2600-01 12 49431030 49431031 - G KMT2D Frame_Shift_Ins p.Q3370Pfs*53 0.30 TCGA-34-2600-01 12 50028964 50028964 C A PRPF40B Silent p.R362R 0.28 TCGA-34-2600-01 12 52307358 52307358 C T ACVRL1 Missense_Mutation p.S110L 0.07 tolerated(0.25) benign(0.005) TCGA-34-2600-01 12 64202821 64202821 G A TMEM5 Missense_Mutation p.M427I 0.07 tolerated(0.35) benign(0.002) TCGA-34-2600-01 12 66698709 66698709 T C HELB Missense_Mutation p.L129P 0.23 deleterious(0) probably_damaging(0.999) TCGA-34-2600-01 12 66703903 66703903 G T HELB Missense_Mutation p.D399Y 0.53 deleterious(0.01) possibly_damaging(0.527) TCGA-34-2600-01 12 67700370 67700370 G C CAND1 Missense_Mutation p.L974F 0.05 deleterious(0) probably_damaging(0.974) TCGA-34-2600-01 12 67703954 67703954 A T CAND1 Missense_Mutation p.H1073L 0.57 deleterious(0) probably_damaging(1) TCGA-34-2600-01 12 78401170 78401170 C G NAV3 Missense_Mutation p.Q618E 0.18 deleterious(0) probably_damaging(0.99) TCGA-34-2600-01 12 80704460 80704460 G C OTOGL Missense_Mutation p.E1126Q 0.21 tolerated(0.1) benign(0.14) TCGA-34-2600-01 12 81839428 81839428 C G PPFIA2 Silent p.R159R 0.32 TCGA-34-2600-01 12 98992432 98992432 A T SLC25A3 Missense_Mutation p.T199S 0.28 tolerated(0.21) benign(0.088) TCGA-34-2600-01 13 111176244 111176244 T A RAB20 Missense_Mutation p.Y158F 0.05 tolerated(0.13) probably_damaging(0.999) TCGA-34-2600-01 13 25458175 25458175 C G CENPJ Missense_Mutation p.Q1250H 0.07 deleterious(0) possibly_damaging(0.497) TCGA-34-2600-01 13 27216395 27216395 C T WASF3 Intron 0.17 TCGA-34-2600-01 13 28610129 28610129 G A FLT3 Missense_Mutation p.S454L 0.22 tolerated(0.07) possibly_damaging(0.862) TCGA-34-2600-01 13 33327663 33327663 C T PDS5B Missense_Mutation p.A977V 0.05 tolerated(0.12) benign(0.006) TCGA-34-2600-01 13 37678790 37678790 C T CSNK1A1L Missense_Mutation p.D202N 0.15 deleterious_low_confidence(0) possibly_damaging(0.906) TCGA-34-2600-01 13 41766967 41766967 G C KBTBD7 Missense_Mutation p.S476C 0.05 tolerated(0.18) probably_damaging(0.993) TCGA-34-2600-01 13 41767353 41767353 G C KBTBD7 Missense_Mutation p.I347M 0.13 deleterious(0.02) benign(0.444) TCGA-34-2600-01 13 42407528 42407528 C A VWA8 Missense_Mutation p.G522V 0.51 deleterious(0) probably_damaging(0.998) TCGA-34-2600-01 13 49281675 49281675 C G CYSLTR2 Missense_Mutation p.S241C 0.04 tolerated(0.29) benign(0.152) TCGA-34-2600-01 13 58299156 58299156 C T PCDH17 Nonsense_Mutation p.Q1070* 0.26 TCGA-34-2600-01 13 64321269 64321269 T C AL445989.1 Silent p.S112S 0.81 TCGA-34-2600-01 14 32624153 32624153 G A ARHGAP5 Silent p.%3D 0.38 TCGA-34-2600-01 14 35272070 35272070 T C BAZ1A Missense_Mutation p.H284R 0.81 tolerated(0.4) benign(0) TCGA-34-2600-01 14 36140706 36140706 G A RALGAPA1 Silent p.I1191I 0.31 TCGA-34-2600-01 14 44975031 44975031 G A FSCB Missense_Mutation p.P387L 0.78 deleterious(0.01) benign(0.008) TCGA-34-2600-01 14 70925515 70925515 T A ADAM21 Nonsense_Mutation p.C433* 0.89 TCGA-34-2600-01 15 101872072 101872072 C T PCSK6 Missense_Mutation p.E674K 0.06 tolerated(0.42) benign(0.133) TCGA-34-2600-01 15 20874896 20874896 C A NBEAP1 RNA 0.10 TCGA-34-2600-01 15 22382772 22382772 G T OR4N4 Missense_Mutation p.Q100H 0.22 deleterious(0) probably_damaging(0.998) TCGA-34-2600-01 15 25928476 25928476 A T ATP10A Missense_Mutation p.L1150Q 0.60 deleterious(0) probably_damaging(0.931) TCGA-34-2600-01 15 34528946 34528946 C T SLC12A6 Missense_Mutation p.R1002Q 0.20 tolerated(0.06) possibly_damaging(0.803) TCGA-34-2600-01 15 38243444 38243444 G C TMCO5A 3'UTR 0.10 TCGA-34-2600-01 15 40916355 40916355 C T CASC5 Missense_Mutation p.S1324F 0.05 deleterious(0.03) benign(0.048) TCGA-34-2600-01 15 42742027 42742027 C T ZNF106 Missense_Mutation p.E792K 0.08 deleterious(0.01) probably_damaging(0.993) TCGA-34-2600-01 15 44109429 44109429 C G MFAP1 Missense_Mutation p.E99D 0.56 tolerated(0.33) benign(0.217) TCGA-34-2600-01 15 44109440 44109440 C G MFAP1 Missense_Mutation p.D96H 0.60 deleterious(0.01) possibly_damaging(0.861) TCGA-34-2600-01 15 45410045 45410045 G A DUOXA2 Missense_Mutation p.G301S 0.09 tolerated(1) benign(0.001) TCGA-34-2600-01 15 45983397 45983397 G - SQRDL 3'UTR 0.65 TCGA-34-2600-01 15 51839475 51839475 C T DMXL2 Missense_Mutation p.R233Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-34-2600-01 15 52244057 52244057 C T LEO1 Missense_Mutation p.R532H 0.74 deleterious(0.02) benign(0.192) TCGA-34-2600-01 15 63632566 63632566 C A CA12 Missense_Mutation p.G223V 0.52 deleterious(0) probably_damaging(1) TCGA-34-2600-01 15 63880418 63880418 G T USP3 Intron 0.18 TCGA-34-2600-01 15 65555514 65555514 C G PARP16 Missense_Mutation p.D222H 0.40 deleterious(0) probably_damaging(0.987) TCGA-34-2600-01 15 67479716 67479716 G C SMAD3 Missense_Mutation p.K341N 0.04 deleterious(0.01) probably_damaging(0.995) TCGA-34-2600-01 15 75580697 75580697 G T GOLGA6D Nonsense_Mutation p.E186* 0.09 TCGA-34-2600-01 15 79059849 79059849 C T ADAMTS7 Missense_Mutation p.V911M 0.11 tolerated(0.11) benign(0.104) TCGA-34-2600-01 15 88524582 88524582 G C NTRK3 Intron 0.04 TCGA-34-2600-01 15 88678596 88678596 C G NTRK3 Missense_Mutation p.E314Q 0.16 tolerated(0.25) benign(0.009) TCGA-34-2600-01 16 1570317 1570317 C T IFT140 Missense_Mutation p.D1230N 0.06 deleterious(0.03) probably_damaging(0.948) TCGA-34-2600-01 16 1828177 1828177 G T SPSB3 Missense_Mutation p.F150L 0.20 deleterious(0) probably_damaging(0.968) TCGA-34-2600-01 16 23641137 23641137 C T PALB2 Missense_Mutation p.G780S 0.30 tolerated(0.4) benign(0) TCGA-34-2600-01 16 29810585 29810585 G C KIF22 Missense_Mutation p.V254L 0.28 deleterious(0) possibly_damaging(0.578) TCGA-34-2600-01 16 30038040 30038040 C A FAM57B Missense_Mutation p.A112S 0.33 tolerated(0.74) benign(0.061) TCGA-34-2600-01 16 31088519 31088519 C T ZNF646 Missense_Mutation p.R292W 0.05 deleterious(0.02) benign(0.023) TCGA-34-2600-01 16 3832751 3832751 G A CREBBP Nonsense_Mutation p.Q503* 0.33 TCGA-34-2600-01 16 4414874 4414874 G C CORO7 Missense_Mutation p.P316A 0.39 deleterious(0) probably_damaging(0.999) TCGA-34-2600-01 16 461361 461361 G A DECR2 Missense_Mutation p.G221D 0.20 deleterious(0.03) benign(0.072) TCGA-34-2600-01 16 49670780 49670780 C A ZNF423 Missense_Mutation p.K761N 0.50 tolerated(0.29) benign(0.001) TCGA-34-2600-01 16 50112783 50112783 G C HEATR3 Missense_Mutation p.E299Q 0.20 deleterious(0.03) probably_damaging(0.988) TCGA-34-2600-01 16 52473751 52473751 G C TOX3 Missense_Mutation p.Q373E 0.32 deleterious_low_confidence(0.01) benign(0.076) TCGA-34-2600-01 16 601555 601555 G A CAPN15 Missense_Mutation p.G746S 0.23 deleterious(0) probably_damaging(1) TCGA-34-2600-01 16 67116119 67116119 G T CBFB Nonsense_Mutation p.E135* 0.33 TCGA-34-2600-01 16 67116183 67116183 G C CBFB Missense_Mutation p.R156T 0.24 deleterious(0.03) probably_damaging(0.997) TCGA-34-2600-01 16 70820221 70820221 T A VAC14 Missense_Mutation p.H51L 0.31 deleterious(0.04) possibly_damaging(0.632) TCGA-34-2600-01 16 81094912 81094912 C A C16orf46 Missense_Mutation p.V348L 0.36 tolerated(0.7) benign(0.035) TCGA-34-2600-01 16 81204638 81204638 G C PKD1L2 3'Flank 0.47 TCGA-34-2600-01 16 84063148 84063148 G C SLC38A8 Missense_Mutation p.S214C 0.16 deleterious(0.02) probably_damaging(0.971) TCGA-34-2600-01 16 8889886 8889886 C A TMEM186 Missense_Mutation p.V189F 0.33 tolerated(1) benign(0.009) TCGA-34-2600-01 16 8996252 8996252 C T USP7 Missense_Mutation p.D643N 0.08 tolerated(0.15) benign(0.008) TCGA-34-2600-01 17 10432298 10432298 C A MYH2 Missense_Mutation p.E1151D 0.81 tolerated(0.22) possibly_damaging(0.88) TCGA-34-2600-01 17 11550450 11550450 C G DNAH9 Missense_Mutation p.L678V 0.05 probably_damaging(0.996) TCGA-34-2600-01 17 19770651 19770651 C A ULK2 Missense_Mutation p.R27L 0.81 deleterious(0.01) benign(0.058) TCGA-34-2600-01 17 26976155 26976155 C A SDF2 Missense_Mutation p.G163V 0.11 deleterious(0) probably_damaging(1) TCGA-34-2600-01 17 27042849 27042849 C G RAB34 Missense_Mutation p.E152Q 0.04 tolerated(0.06) possibly_damaging(0.495) TCGA-34-2600-01 17 27047813 27047813 G A RPL23A Silent p.K38K 0.09 TCGA-34-2600-01 17 28296329 28296329 G A EFCAB5 Silent p.L237L 0.26 TCGA-34-2600-01 17 3144519 3144519 C A OR1D4 RNA 0.22 TCGA-34-2600-01 17 37883158 37883158 G C ERBB2 Missense_Mutation p.E1021Q 0.26 deleterious(0.01) possibly_damaging(0.877) TCGA-34-2600-01 17 38033115 38033115 C G ZPBP2 3'UTR 0.32 TCGA-34-2600-01 17 38142963 38142963 G C PSMD3 Missense_Mutation p.E183Q 0.83 tolerated(0.22) benign(0.022) TCGA-34-2600-01 17 38421251 38421251 G C WIPF2 Missense_Mutation p.E275Q 0.10 deleterious(0.04) benign(0.106) TCGA-34-2600-01 17 41244205 41244205 C G BRCA1 Missense_Mutation p.E1115Q 0.05 tolerated(0.38) benign(0.3) TCGA-34-2600-01 17 42882559 42882559 G C GJC1 Missense_Mutation p.C209W 0.82 deleterious(0) probably_damaging(0.996) TCGA-34-2600-01 17 42882560 42882560 C T GJC1 Missense_Mutation p.C209Y 0.83 deleterious(0) probably_damaging(0.995) TCGA-34-2600-01 17 46685109 46685109 C A HOXB7 3'UTR 0.77 TCGA-34-2600-01 17 5073990 5073990 G A USP6 Missense_Mutation p.R1245Q 0.44 tolerated_low_confidence(0.39) benign(0.153) TCGA-34-2600-01 17 58740956 58740956 G C PPM1D 3'UTR 0.11 TCGA-34-2600-01 17 7319158 7319158 A G NLGN2 Missense_Mutation p.T456A 0.82 deleterious(0.01) probably_damaging(0.989) TCGA-34-2600-01 17 74623625 74623625 A G ST6GALNAC1 Missense_Mutation p.L291P 0.85 benign(0) TCGA-34-2600-01 17 75471954 75471954 C G SEPT9 Intron 0.26 TCGA-34-2600-01 17 7577141 7577141 C A TP53 Missense_Mutation p.G266V 0.72 deleterious(0) probably_damaging(0.999) TCGA-34-2600-01 17 7592030 7592030 C G WRAP53 Missense_Mutation p.P22A 0.05 tolerated_low_confidence(0.26) benign(0.001) TCGA-34-2600-01 17 78449473 78449473 C G NPTX1 Missense_Mutation p.D164H 0.10 deleterious(0) probably_damaging(0.987) TCGA-34-2600-01 17 79632239 79632239 C T OXLD1 Missense_Mutation p.G146R 0.94 tolerated(0.07) benign(0.153) TCGA-34-2600-01 18 10532793 10532793 G A NAPG Splice_Site p.X70_splice 0.43 TCGA-34-2600-01 18 28992992 28992992 G T DSG4 Nonsense_Mutation p.E872* 0.59 TCGA-34-2600-01 18 40857251 40857251 T A SYT4 5'UTR 0.60 TCGA-34-2600-01 18 47581668 47581668 C A MYO5B Missense_Mutation p.K36N 0.61 tolerated(0.23) benign(0.112) TCGA-34-2600-01 18 70205928 70205928 C G CBLN2 Missense_Mutation p.S146T 0.48 tolerated(0.56) benign(0.034) TCGA-34-2600-01 18 74622035 74622035 G T ZNF236 Missense_Mutation p.A853S 0.47 tolerated(0.33) benign(0.005) TCGA-34-2600-01 18 76753675 76753675 G A SALL3 Missense_Mutation p.E562K 0.19 tolerated(0.1) possibly_damaging(0.475) TCGA-34-2600-01 18 77960632 77960632 T C PARD6G Missense_Mutation p.S86G 0.39 deleterious(0) possibly_damaging(0.665) TCGA-34-2600-01 19 11664626 11664626 C G ELOF1 Splice_Site p.X63_splice 0.22 TCGA-34-2600-01 19 11833621 11833621 G A ZNF823 Missense_Mutation p.T243M 0.07 deleterious(0.01) probably_damaging(1) TCGA-34-2600-01 19 11892259 11892259 C T ZNF441 Silent p.F540F 0.60 TCGA-34-2600-01 19 12639413 12639413 C G ZNF564 Missense_Mutation p.R34P 0.40 tolerated(0.11) probably_damaging(0.974) TCGA-34-2600-01 19 15281270 15281270 G C NOTCH3 Silent p.V1662V 0.20 TCGA-34-2600-01 19 17531169 17531169 C T MVB12A Silent p.F46F 0.07 TCGA-34-2600-01 19 19413072 19413072 A T SUGP1 Splice_Site p.X296_splice 0.28 TCGA-34-2600-01 19 19766937 19766937 C A ATP13A1 Missense_Mutation p.R380L 0.25 deleterious(0) benign(0.342) TCGA-34-2600-01 19 20133841 20133841 C A ZNF682 Missense_Mutation p.K66N 0.03 deleterious(0.02) possibly_damaging(0.788) TCGA-34-2600-01 19 21990638 21990638 T G ZNF43 Missense_Mutation p.Y734S 0.42 deleterious(0) possibly_damaging(0.81) TCGA-34-2600-01 19 22785653 22785653 G T AC011467.1 3'Flank 0.47 TCGA-34-2600-01 19 2834362 2834362 G C ZNF554 Missense_Mutation p.E377Q 0.05 deleterious(0) probably_damaging(0.998) TCGA-34-2600-01 19 30199261 30199261 C T C19orf12 Silent p.K31K 0.05 TCGA-34-2600-01 19 30936591 30936591 G T ZNF536 Missense_Mutation p.G708W 0.46 deleterious(0) probably_damaging(1) TCGA-34-2600-01 19 35231986 35231986 G C ZNF181 Missense_Mutation p.E234Q 0.04 deleterious(0.01) benign(0.002) TCGA-34-2600-01 19 37619207 37619207 G C ZNF420 Missense_Mutation p.Q438H 0.20 deleterious(0.05) possibly_damaging(0.558) TCGA-34-2600-01 19 37619795 37619795 G C ZNF420 Missense_Mutation p.Q634H 0.18 tolerated(0.11) benign(0.364) TCGA-34-2600-01 19 38652941 38652941 G A SIPA1L3 Missense_Mutation p.G1237E 0.14 tolerated(0.1) possibly_damaging(0.451) TCGA-34-2600-01 19 38990398 38990398 T A RYR1 Missense_Mutation p.I2384N 0.56 benign(0.354) TCGA-34-2600-01 19 4298232 4298232 C T TMIGD2 Missense_Mutation p.E53K 0.05 deleterious(0) possibly_damaging(0.874) TCGA-34-2600-01 19 46195232 46195232 G A SNRPD2 5'UTR 0.57 TCGA-34-2600-01 19 4704166 4704166 C A DPP9 Missense_Mutation p.D193Y 0.37 deleterious(0) probably_damaging(0.975) TCGA-34-2600-01 19 47260311 47260311 G C FKRP 3'UTR 0.33 TCGA-34-2600-01 19 47422551 47422551 G T ARHGAP35 Nonsense_Mutation p.E207* 0.91 TCGA-34-2600-01 19 47422564 47422564 G C ARHGAP35 Missense_Mutation p.R211T 0.93 deleterious(0) possibly_damaging(0.52) TCGA-34-2600-01 19 48339523 48339523 G A CRX Missense_Mutation p.E42K 0.14 deleterious(0) probably_damaging(1) TCGA-34-2600-01 19 48537475 48537475 C G CABP5 Missense_Mutation p.E165Q 0.06 deleterious(0.01) probably_damaging(0.969) TCGA-34-2600-01 19 49557662 49557662 C G CGB7 Missense_Mutation p.L128F 0.31 tolerated(0.7) benign(0.081) TCGA-34-2600-01 19 51361393 51361393 C G KLK3 Silent p.L105L 0.32 TCGA-34-2600-01 19 52147258 52147258 C A SIGLEC14 Silent p.V262V 0.35 TCGA-34-2600-01 19 52376027 52376027 C G ZNF577 Missense_Mutation p.E406Q 0.02 deleterious(0.04) possibly_damaging(0.829) TCGA-34-2600-01 19 52519616 52519616 C T ZNF614 Missense_Mutation p.R412H 0.13 tolerated(0.15) benign(0.007) TCGA-34-2600-01 19 53303166 53303166 G A ZNF28 Silent p.F644F 0.03 TCGA-34-2600-01 19 53454623 53454623 C T ZNF816 Silent p.L135L 0.04 TCGA-34-2600-01 19 53911332 53911332 C T ZNF765 Missense_Mutation p.S175L 0.04 tolerated(0.12) benign(0.216) TCGA-34-2600-01 19 54664048 54664048 G C TMC4 Missense_Mutation p.L712V 0.11 tolerated_low_confidence(0.05) benign(0.087) TCGA-34-2600-01 19 54711140 54711140 C T RPS9 Intron 0.27 TCGA-34-2600-01 19 55143120 55143120 G A LILRB1 Silent p.K80K 0.51 TCGA-34-2600-01 19 57326411 57326411 G T PEG3 Nonsense_Mutation p.C1133* 0.48 TCGA-34-2600-01 19 57640100 57640100 G C USP29 Missense_Mutation p.M19I 0.42 tolerated(0.15) benign(0.001) TCGA-34-2600-01 19 5784332 5784332 G A CTB-54O9.9 3'UTR 0.46 TCGA-34-2600-01 19 57883207 57883207 C G ZNF547 Missense_Mutation p.L28V 0.04 deleterious(0.01) probably_damaging(0.998) TCGA-34-2600-01 19 58485881 58485881 T C C19orf18 5'UTR 0.59 TCGA-34-2600-01 19 7685290 7685290 G A XAB2 Missense_Mutation p.R713W 0.63 deleterious(0) possibly_damaging(0.881) TCGA-34-2600-01 19 9020767 9020767 G A MUC16 Silent p.L12445L 0.07 TCGA-34-2600-01 19 9020769 9020769 G A MUC16 Missense_Mutation p.L12445F 0.07 possibly_damaging(0.763) TCGA-34-2600-01 19 9066654 9066654 G A MUC16 Missense_Mutation p.S6931L 0.28 unknown(0) TCGA-34-2600-01 19 9806800 9806800 G A ZNF812 5'UTR 0.18 TCGA-34-2600-01 1 10753959 10753959 G T CASZ1 5'UTR 0.81 TCGA-34-2600-01 1 111855005 111855005 G A CHIA Silent p.L83L 0.10 TCGA-34-2600-01 1 145368480 145368480 C G NBPF10 Silent p.V3486V 0.03 TCGA-34-2600-01 1 147408773 147408773 C T GPR89B Silent p.F25F 0.03 TCGA-34-2600-01 1 150772182 150772182 C A CTSK Nonsense_Mutation p.E208* 0.26 TCGA-34-2600-01 1 150931785 150931785 A G SETDB1 Missense_Mutation p.D821G 0.37 deleterious(0.01) probably_damaging(1) TCGA-34-2600-01 1 152188316 152188316 G C HRNR Missense_Mutation p.S1930C 0.07 unknown(0) TCGA-34-2600-01 1 152324336 152324336 G C FLG2 Missense_Mutation p.H1976D 0.28 possibly_damaging(0.507) TCGA-34-2600-01 1 152326177 152326177 C T FLG2 Missense_Mutation p.R1362K 0.41 benign(0.039) TCGA-34-2600-01 1 153177281 153177281 C A LELP1 Missense_Mutation p.P33H 0.49 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-34-2600-01 1 155792234 155792234 C T GON4L Missense_Mutation p.R244K 0.49 tolerated(0.81) benign(0.14) TCGA-34-2600-01 1 156084925 156084925 C A LMNA Silent p.R72R 0.47 TCGA-34-2600-01 1 157548273 157548273 C T FCRL4 Missense_Mutation p.E474K 0.09 tolerated(0.34) benign(0.091) TCGA-34-2600-01 1 158299295 158299295 C A CD1B Missense_Mutation p.G251W 0.43 deleterious(0) probably_damaging(1) TCGA-34-2600-01 1 158449987 158449987 C T OR10R2 Missense_Mutation p.S107F 0.05 tolerated(0.12) benign(0.168) TCGA-34-2600-01 1 159409591 159409591 G A OR10J1 Missense_Mutation p.E15K 0.05 tolerated(0.81) benign(0.001) TCGA-34-2600-01 1 159409695 159409695 C A OR10J1 Silent p.T49T 0.40 TCGA-34-2600-01 1 160394055 160394055 G C VANGL2 Silent p.T429T 0.44 TCGA-34-2600-01 1 162745571 162745571 C T DDR2 Silent p.L662L 0.16 TCGA-34-2600-01 1 169510160 169510160 C G F5 Missense_Mutation p.E1390Q 0.46 tolerated_low_confidence(1) unknown(0) TCGA-34-2600-01 1 179502981 179502981 G T AXDND1 Missense_Mutation p.A923S 0.46 tolerated(0.12) possibly_damaging(0.739) TCGA-34-2600-01 1 179783283 179783283 G A FAM163A Missense_Mutation p.E155K 0.04 tolerated(0.16) possibly_damaging(0.574) TCGA-34-2600-01 1 182544681 182544681 T C RNASEL Missense_Mutation p.Y691C 0.42 deleterious(0) probably_damaging(1) TCGA-34-2600-01 1 196928158 196928158 G A CFHR2 Missense_Mutation p.R254Q 0.49 tolerated(0.38) benign(0.049) TCGA-34-2600-01 1 197072279 197072279 C A ASPM Missense_Mutation p.M2034I 0.12 deleterious(0.03) possibly_damaging(0.465) TCGA-34-2600-01 1 201958560 201958560 G A RNPEP Missense_Mutation p.R213K 0.04 tolerated(0.47) benign(0.005) TCGA-34-2600-01 1 204210871 204210871 G T PLEKHA6 Silent p.I748I 0.13 TCGA-34-2600-01 1 205033472 205033472 G T CNTN2 Silent p.L421L 0.45 TCGA-34-2600-01 1 215914767 215914767 C A USH2A Missense_Mutation p.W3887C 0.33 probably_damaging(1) TCGA-34-2600-01 1 228285083 228285083 C T ARF1 Silent p.F63F 0.03 TCGA-34-2600-01 1 228506760 228506760 G T OBSCN Missense_Mutation p.Q5726H 0.56 probably_damaging(0.959) TCGA-34-2600-01 1 230838998 230838998 A T AGT Silent p.P449P 0.40 TCGA-34-2600-01 1 231349681 231349681 C T TRIM67 Silent p.D748D 0.05 TCGA-34-2600-01 1 231374720 231374720 G A C1orf131 Silent p.I111I 0.36 TCGA-34-2600-01 1 235345964 235345964 G A ARID4B Missense_Mutation p.S757L 0.06 tolerated_low_confidence(0.25) benign(0.001) TCGA-34-2600-01 1 240637511 240637511 G T FMN2 3'UTR 0.47 TCGA-34-2600-01 1 247076562 247076562 T C AHCTF1 Silent p.S185S 0.43 TCGA-34-2600-01 1 248085040 248085040 T A OR2T8 Missense_Mutation p.S241T 0.48 deleterious(0) probably_damaging(0.96) TCGA-34-2600-01 1 248436396 248436396 A T OR2T33 Missense_Mutation p.S241T 0.08 deleterious(0) probably_damaging(0.971) TCGA-34-2600-01 1 248685458 248685458 C A OR2G6 Missense_Mutation p.H171N 0.50 tolerated(0.37) benign(0.044) TCGA-34-2600-01 1 248685821 248685821 C T OR2G6 Silent p.L292L 0.09 TCGA-34-2600-01 1 32742336 32742336 G A LCK Missense_Mutation p.A305T 0.59 deleterious(0) probably_damaging(0.999) TCGA-34-2600-01 1 34128589 34128589 C A CSMD2 Missense_Mutation p.A1346S 0.33 tolerated(0.37) benign(0.005) TCGA-34-2600-01 1 34128590 34128590 C T CSMD2 Silent p.P1345P 0.34 TCGA-34-2600-01 1 37324736 37324736 G A GRIK3 Silent p.G359G 0.62 TCGA-34-2600-01 1 38463723 38463723 G A FHL3 Missense_Mutation p.S138F 0.11 deleterious(0) probably_damaging(0.936) TCGA-34-2600-01 1 41013180 41013180 C G ZNF684 3'UTR 0.10 TCGA-34-2600-01 1 44126006 44126006 G T KDM4A Nonsense_Mutation p.E118* 0.38 TCGA-34-2600-01 1 45887417 45887417 G C TESK2 Silent p.L108L 0.03 TCGA-34-2600-01 1 67243017 67243017 G A TCTEX1D1 Silent p.Q140Q 0.57 TCGA-34-2600-01 1 67895808 67895808 G C SERBP1 Missense_Mutation p.A59G 0.84 tolerated(0.39) probably_damaging(0.986) TCGA-34-2600-01 1 8418817 8418817 C T RERE Missense_Mutation p.A1260T 0.11 unknown(0) TCGA-34-2600-01 1 97243153 97243153 G T PTBP2 Missense_Mutation p.V149F 0.79 deleterious(0) probably_damaging(0.916) TCGA-34-2600-01 1 99150477 99150477 A G SNX7 Missense_Mutation p.M73V 0.86 tolerated(0.92) benign(0.001) TCGA-34-2600-01 20 16025218 16025218 G A MACROD2 Intron 0.04 TCGA-34-2600-01 20 2618178 2618178 C T TMC2 Missense_Mutation p.S815L 0.06 tolerated(0.46) benign(0.002) TCGA-34-2600-01 20 31019263 31019263 C T ASXL1 Silent p.F286F 0.23 TCGA-34-2600-01 20 31022586 31022586 C T ASXL1 Silent p.L691L 0.11 TCGA-34-2600-01 20 3211589 3211589 G A SLC4A11 Silent p.D429D 0.45 TCGA-34-2600-01 20 32298406 32298406 G A PXMP4 Silent p.L110L 0.13 TCGA-34-2600-01 20 34260741 34260741 C G NFS1 Missense_Mutation p.E416Q 0.04 deleterious(0.04) benign(0.033) TCGA-34-2600-01 20 37546855 37546855 G A PPP1R16B Missense_Mutation p.R417Q 0.04 tolerated(0.74) benign(0.001) TCGA-34-2600-01 20 42169587 42169587 G C L3MBTL1 Missense_Mutation p.R781T 0.10 tolerated_low_confidence(0.34) benign(0) TCGA-34-2600-01 20 43927019 43927019 G T MATN4 Missense_Mutation p.A406D 0.27 benign(0.005) TCGA-34-2600-01 20 44576331 44576331 G - PCIF1 Frame_Shift_Del p.E685Rfs*33 0.61 TCGA-34-2600-01 20 57769516 57769516 C G ZNF831 Missense_Mutation p.P1148A 0.73 tolerated(0.06) possibly_damaging(0.583) TCGA-34-2600-01 20 5966673 5966673 C T MCM8 Nonsense_Mutation p.R687* 0.03 TCGA-34-2600-01 20 62737588 62737588 C G NPBWR2 Silent p.L199L 0.22 TCGA-34-2600-01 20 9520232 9520232 C T PAK7 Silent p.L679L 0.14 TCGA-34-2600-01 21 17912228 17912228 G C MIRLET7C RNA 0.23 TCGA-34-2600-01 21 19653497 19653497 A T TMPRSS15 Missense_Mutation p.L843Q 0.34 deleterious(0) probably_damaging(0.986) TCGA-34-2600-01 21 38309032 38309032 G A HLCS Missense_Mutation p.S238F 0.07 deleterious(0) possibly_damaging(0.732) TCGA-34-2600-01 22 23982539 23982539 G C GUSBP11 Intron 0.08 TCGA-34-2600-01 22 24765209 24765209 C T SPECC1L Missense_Mutation p.S1003L 0.16 deleterious(0) benign(0.101) TCGA-34-2600-01 22 38609893 38609893 A G MAFF Silent p.L11L 0.38 TCGA-34-2600-01 22 39078929 39078929 C G TOMM22 Missense_Mutation p.I94M 0.14 deleterious(0) probably_damaging(0.91) TCGA-34-2600-01 22 42042981 42042981 A C XRCC6 Silent p.P285P 0.37 TCGA-34-2600-01 22 43563888 43563888 G C TTLL12 3'UTR 0.38 TCGA-34-2600-01 22 43933266 43933266 C A EFCAB6 Missense_Mutation p.D1347Y 0.47 deleterious(0) possibly_damaging(0.769) TCGA-34-2600-01 22 47059980 47059980 G A GRAMD4 Nonsense_Mutation p.W228* 0.04 TCGA-34-2600-01 22 50987715 50987715 G A KLHDC7B Missense_Mutation p.E374K 0.05 tolerated(0.56) benign(0.031) TCGA-34-2600-01 2 108881303 108881303 A C SULT1C3 Missense_Mutation p.K215T 0.59 deleterious(0) probably_damaging(0.996) TCGA-34-2600-01 2 11053771 11053771 A T KCNF1 Missense_Mutation p.N407Y 0.31 deleterious(0) possibly_damaging(0.739) TCGA-34-2600-01 2 11300791 11300791 C A PQLC3 Missense_Mutation p.N89K 0.53 tolerated(0.76) benign(0.005) TCGA-34-2600-01 2 128394204 128394204 G A MYO7B Splice_Site p.X2043_splice 0.28 TCGA-34-2600-01 2 128398512 128398512 C A LIMS2 Nonsense_Mutation p.E262* 0.04 TCGA-34-2600-01 2 131521044 131521044 G C AMER3 Missense_Mutation p.E467Q 0.23 deleterious(0) probably_damaging(1) TCGA-34-2600-01 2 144381754 144381754 C A ARHGAP15 Silent p.T352T 0.53 TCGA-34-2600-01 2 144710406 144710406 C T GTDC1 Missense_Mutation p.E379K 0.05 deleterious(0) probably_damaging(0.999) TCGA-34-2600-01 2 152553725 152553725 G A NEB Silent p.G469G 0.30 TCGA-34-2600-01 2 165551453 165551453 C T COBLL1 Missense_Mutation p.D855N 0.06 tolerated(0.6) benign(0) TCGA-34-2600-01 2 166165188 166165188 A G SCN2A Silent p.T163T 0.24 TCGA-34-2600-01 2 168106414 168106414 G T XIRP2 Nonsense_Mutation p.E2838* 0.04 TCGA-34-2600-01 2 170151127 170151127 G A LRP2 Missense_Mutation p.S174L 0.05 possibly_damaging(0.78) TCGA-34-2600-01 2 175440079 175440079 C A WIPF1 Missense_Mutation p.G71C 0.24 deleterious(0) possibly_damaging(0.491) TCGA-34-2600-01 2 179398902 179398902 C A TTN Missense_Mutation p.G34147V 0.23 TCGA-34-2600-01 2 179404840 179404840 C A TTN Nonsense_Mutation p.E32685* 0.03 TCGA-34-2600-01 2 179416881 179416881 G A TTN Missense_Mutation p.P30249L 0.55 TCGA-34-2600-01 2 179464429 179464429 G C TTN Silent p.L18733L 0.09 TCGA-34-2600-01 2 179477935 179477935 C - TTN Frame_Shift_Del p.G16534Efs*11 0.38 TCGA-34-2600-01 2 179514921 179514921 C G TTN Missense_Mutation p.E13263Q 0.13 TCGA-34-2600-01 2 1843124 1843124 G T MYT1L Nonsense_Mutation p.C957* 0.51 TCGA-34-2600-01 2 1893048 1893048 G T MYT1L Silent p.R827R 0.59 TCGA-34-2600-01 2 189861890 189861890 G T COL3A1 Splice_Site p.X588_splice 0.23 TCGA-34-2600-01 2 201399838 201399838 G C SGOL2 Missense_Mutation p.E85Q 0.09 deleterious(0) probably_damaging(1) TCGA-34-2600-01 2 201438273 201438273 G C SGOL2 Missense_Mutation p.Q1068H 0.60 tolerated(0.19) probably_damaging(0.922) TCGA-34-2600-01 2 201756805 201756805 G A NIF3L1 Missense_Mutation p.E47K 0.04 deleterious(0) probably_damaging(0.996) TCGA-34-2600-01 2 202483662 202483662 C G ALS2CR11 Missense_Mutation p.K64N 0.27 deleterious(0.01) probably_damaging(0.952) TCGA-34-2600-01 2 210559381 210559381 C T MAP2 Silent p.A829A 0.62 TCGA-34-2600-01 2 21231921 21231921 G C APOB Missense_Mutation p.L2607V 0.31 probably_damaging(0.991) TCGA-34-2600-01 2 21239320 21239320 C T APOB Missense_Mutation p.G1108D 0.67 probably_damaging(0.999) TCGA-34-2600-01 2 219267953 219267953 A T CTDSP1 Splice_Site p.X158_splice 0.28 TCGA-34-2600-01 2 223065777 223065777 C A PAX3 3'UTR 0.29 TCGA-34-2600-01 2 234371381 234371381 G C DGKD Silent p.L1062L 0.04 TCGA-34-2600-01 2 234545802 234545802 G A UGT1A10 Missense_Mutation p.V212M 0.06 tolerated(0.69) benign(0.003) TCGA-34-2600-01 2 242371175 242371175 C T FARP2 Missense_Mutation p.H285Y 0.10 deleterious(0.01) possibly_damaging(0.773) TCGA-34-2600-01 2 27900642 27900642 G A SLC4A1AP Silent p.A538A 0.29 TCGA-34-2600-01 2 48848036 48848036 G A STON1-GTF2A1L Missense_Mutation p.R727Q 0.53 tolerated(0.11) probably_damaging(0.999) TCGA-34-2600-01 2 61622326 61622326 C T USP34 Missense_Mutation p.D199N 0.14 deleterious(0) possibly_damaging(0.758) TCGA-34-2600-01 2 63101542 63101542 C T EHBP1 Nonsense_Mutation p.Q389* 0.10 TCGA-34-2600-01 2 63101595 63101595 C T EHBP1 Silent p.V406V 0.09 TCGA-34-2600-01 2 68805172 68805172 C T APLF 3'UTR 0.33 TCGA-34-2600-01 2 7154603 7154603 G A RNF144A Missense_Mutation p.E52K 0.08 tolerated(0.13) possibly_damaging(0.564) TCGA-34-2600-01 2 73827841 73827841 C T ALMS1 Missense_Mutation p.T3901I 0.24 probably_damaging(0.999) TCGA-34-2600-01 2 74042728 74042728 T G C2orf78 Missense_Mutation p.L460V 0.62 deleterious(0) possibly_damaging(0.801) TCGA-34-2600-01 2 74141894 74141894 C A ACTG2 Missense_Mutation p.S234Y 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.82) TCGA-34-2600-01 2 79313940 79313940 C G REG1B Missense_Mutation p.D61H 0.03 deleterious(0) possibly_damaging(0.57) TCGA-34-2600-01 2 86267661 86267661 C G POLR1A Silent p.L1198L 0.05 TCGA-34-2600-01 2 89247051 89247051 C G IGKV1-5 Missense_Mutation p.R40T 0.27 tolerated(0.55) benign(0.016) TCGA-34-2600-01 2 90060889 90060889 C T IGKV6D-21 Missense_Mutation p.S79L 0.60 deleterious(0.05) benign(0.186) TCGA-34-2600-01 2 90077815 90077815 C A IGKV3D-20 Silent p.L13L 0.27 TCGA-34-2600-01 2 90229410 90229410 A C IGKV1D-42 Missense_Mutation p.H77P 0.58 tolerated(0.13) benign(0.299) TCGA-34-2600-01 2 98341707 98341707 C A ZAP70 Silent p.G185G 0.42 TCGA-34-2600-01 2 98351769 98351769 C A ZAP70 Missense_Mutation p.T380K 0.28 tolerated(1) benign(0) TCGA-34-2600-01 2 99811647 99811647 G C MRPL30 Missense_Mutation p.L116F 0.07 deleterious(0) probably_damaging(0.999) TCGA-34-2600-01 2 99863224 99863224 G A LYG2 Silent p.L35L 0.56 TCGA-34-2600-01 3 102187820 102187820 C A ZPLD1 Missense_Mutation p.D274E 0.54 tolerated(0.07) possibly_damaging(0.645) TCGA-34-2600-01 3 102196512 102196512 T C ZPLD1 3'UTR 0.36 TCGA-34-2600-01 3 113146061 113146061 G A WDR52 Nonsense_Mutation p.Q76* 0.04 TCGA-34-2600-01 3 118623503 118623503 A C IGSF11 Missense_Mutation p.N282K 0.22 deleterious(0) probably_damaging(0.998) TCGA-34-2600-01 3 120315200 120315200 C T NDUFB4 5'UTR 0.09 TCGA-34-2600-01 3 126708574 126708574 G A PLXNA1 Missense_Mutation p.E380K 0.08 tolerated(0.06) benign(0.197) TCGA-34-2600-01 3 126724013 126724013 C T PLXNA1 Silent p.S608S 0.14 TCGA-34-2600-01 3 130368158 130368158 G A COL6A6 Missense_Mutation p.E1829K 0.12 tolerated(0.58) benign(0.011) TCGA-34-2600-01 3 139102235 139102235 C G COPB2 Missense_Mutation p.D16H 0.03 deleterious(0) probably_damaging(0.995) TCGA-34-2600-01 3 140122575 140122575 G A CLSTN2 Missense_Mutation p.D113N 0.02 tolerated(0.17) possibly_damaging(0.504) TCGA-34-2600-01 3 142499869 142499869 G T TRPC1 Nonsense_Mutation p.E320* 0.25 TCGA-34-2600-01 3 151545748 151545748 C T AADAC Missense_Mutation p.R330C 0.03 deleterious(0.04) possibly_damaging(0.883) TCGA-34-2600-01 3 153905615 153905615 A G ARHGEF26 Silent p.L543L 0.52 TCGA-34-2600-01 3 155203419 155203419 T G PLCH1 Silent p.V908V 0.21 TCGA-34-2600-01 3 164712082 164712082 C A SI Missense_Mutation p.A1602S 0.20 tolerated(0.15) possibly_damaging(0.672) TCGA-34-2600-01 3 167750308 167750308 C T GOLIM4 Silent p.E392E 0.05 TCGA-34-2600-01 3 170843937 170843937 G A TNIK Missense_Mutation p.P593S 0.20 tolerated(0.44) benign(0.269) TCGA-34-2600-01 3 175184923 175184923 C T NAALADL2 Missense_Mutation p.S495F 0.11 deleterious(0) probably_damaging(0.983) TCGA-34-2600-01 3 179527318 179527318 C T PEX5L Silent p.V431V 0.04 TCGA-34-2600-01 3 184603931 184603931 C A VPS8 Missense_Mutation p.L590M 0.11 tolerated(0.18) benign(0.15) TCGA-34-2600-01 3 186435504 186435504 G T KNG1 Missense_Mutation p.R58L 0.19 deleterious(0.03) probably_damaging(0.948) TCGA-34-2600-01 3 192078314 192078314 T C FGF12 Silent p.K71K 0.18 TCGA-34-2600-01 3 194118872 194118872 C A GP5 Missense_Mutation p.G47V 0.75 deleterious(0.01) possibly_damaging(0.572) TCGA-34-2600-01 3 195474071 195474071 C A MUC4 Silent p.L5405L 0.07 TCGA-34-2600-01 3 45785340 45785340 C G SACM1L 3'UTR 0.75 TCGA-34-2600-01 3 47084181 47084181 C A SETD2 Missense_Mutation p.V2370F 0.79 deleterious(0) benign(0.398) TCGA-34-2600-01 3 50355432 50355432 C G HYAL2 3'UTR 0.21 TCGA-34-2600-01 3 51246264 51246264 C T DOCK3 Missense_Mutation p.A366V 0.78 tolerated(0.16) benign(0.031) TCGA-34-2600-01 3 58514545 58514545 G A ACOX2 Silent p.N377N 0.77 TCGA-34-2600-01 3 62357936 62357936 G A FEZF2 Missense_Mutation p.A203V 0.78 tolerated(0.08) possibly_damaging(0.739) TCGA-34-2600-01 3 9057404 9057404 G C SRGAP3 Missense_Mutation p.L564V 0.04 deleterious(0) probably_damaging(0.996) TCGA-34-2600-01 3 9739394 9739394 G A MTMR14 Splice_Site p.X538_splice 0.10 TCGA-34-2600-01 3 97677949 97677949 G C MINA Nonsense_Mutation p.Y209* 0.03 TCGA-34-2600-01 3 97852476 97852476 C G OR5H1 Nonsense_Mutation p.S312* 0.04 TCGA-34-2600-01 4 104116309 104116309 G C CENPE Missense_Mutation p.Q147E 0.05 benign(0.002) TCGA-34-2600-01 4 107173142 107173142 C A TBCK Nonsense_Mutation p.E160* 0.33 TCGA-34-2600-01 4 111471004 111471004 T C ENPEP Silent p.Y821Y 0.85 TCGA-34-2600-01 4 122589678 122589678 T A ANXA5 Missense_Mutation p.D303V 0.80 deleterious(0) probably_damaging(0.998) TCGA-34-2600-01 4 189067993 189067993 C A TRIML1 Missense_Mutation p.P292T 0.71 deleterious(0) possibly_damaging(0.825) TCGA-34-2600-01 4 22390389 22390389 C T GPR125 Missense_Mutation p.E969K 0.84 tolerated(0.84) benign(0.196) TCGA-34-2600-01 4 46930618 46930618 G T GABRA4 Missense_Mutation p.A430D 0.69 tolerated_low_confidence(0.06) possibly_damaging(0.821) TCGA-34-2600-01 4 47462166 47462166 C T COMMD8 Missense_Mutation p.E73K 0.26 tolerated(0.07) possibly_damaging(0.462) TCGA-34-2600-01 4 47538513 47538513 G A ATP10D Missense_Mutation p.D359N 0.05 tolerated(0.57) benign(0.168) TCGA-34-2600-01 4 57876647 57876647 G T POLR2B Missense_Mutation p.V509L 0.82 deleterious(0.04) benign(0.006) TCGA-34-2600-01 4 59405 59405 A G ZNF595 Missense_Mutation p.Y29C 0.08 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-34-2600-01 4 68930597 68930597 C T TMPRSS11F Missense_Mutation p.R274Q 0.44 tolerated(0.13) possibly_damaging(0.528) TCGA-34-2600-01 4 7043300 7043300 C G CCDC96 Missense_Mutation p.E456Q 0.81 tolerated(0.06) possibly_damaging(0.838) TCGA-34-2600-01 4 83278594 83278594 C A HNRNPD Nonsense_Mutation p.E209* 0.80 TCGA-34-2600-01 5 102611747 102611747 C T C5orf30 Missense_Mutation p.P43S 0.83 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-34-2600-01 5 110820052 110820052 C G CAMK4 Missense_Mutation p.A437G 0.08 tolerated_low_confidence(0.26) benign(0.014) TCGA-34-2600-01 5 110842061 110842061 C A STARD4 Missense_Mutation p.W41L 0.79 tolerated(0.57) probably_damaging(0.996) TCGA-34-2600-01 5 114506872 114506872 C T TRIM36 Intron 0.30 TCGA-34-2600-01 5 118862906 118862906 C G HSD17B4 Missense_Mutation p.Q612E 0.05 tolerated(0.2) possibly_damaging(0.699) TCGA-34-2600-01 5 131290009 131290009 G T ACSL6 Missense_Mutation p.T696K 0.85 deleterious(0) probably_damaging(1) TCGA-34-2600-01 5 133945269 133945269 C T SAR1B Missense_Mutation p.E114K 0.32 deleterious(0.02) probably_damaging(0.919) TCGA-34-2600-01 5 13753556 13753556 C A DNAH5 Missense_Mutation p.R3553L 0.46 benign(0.25) TCGA-34-2600-01 5 13776760 13776760 G C DNAH5 Nonsense_Mutation p.S3054* 0.30 TCGA-34-2600-01 5 140502023 140502023 G T PCDHB4 Missense_Mutation p.G148V 0.78 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-34-2600-01 5 140558009 140558009 C G PCDHB8 Missense_Mutation p.P132A 0.23 deleterious_low_confidence(0) possibly_damaging(0.705) TCGA-34-2600-01 5 140774074 140774075 CC T PCDHGA8 Frame_Shift_Del p.P565Lfs*24 0.36 TCGA-34-2600-01 5 140869371 140869371 G A PCDHGC5 Silent p.G188G 0.43 TCGA-34-2600-01 5 140870417 140870417 G C PCDHGC5 Missense_Mutation p.R537P 0.38 deleterious(0.01) possibly_damaging(0.892) TCGA-34-2600-01 5 140871060 140871060 G C PCDHGC5 Silent p.V751V 0.04 TCGA-34-2600-01 5 158749482 158749482 C A IL12B Missense_Mutation p.K134N 0.08 tolerated(0.14) benign(0.326) TCGA-34-2600-01 5 161128738 161128738 C G GABRA6 Missense_Mutation p.L441V 0.07 deleterious(0.04) probably_damaging(0.99) TCGA-34-2600-01 5 16463253 16463253 T A ZNF622 Missense_Mutation p.D338V 0.23 tolerated(0.06) probably_damaging(0.999) TCGA-34-2600-01 5 19612689 19612689 T A CDH18 Missense_Mutation p.H222L 0.24 tolerated(0.08) benign(0.039) TCGA-34-2600-01 5 26915914 26915914 A T CDH9 Missense_Mutation p.L116Q 0.35 deleterious(0) probably_damaging(1) TCGA-34-2600-01 5 41203217 41203217 C T C6 Missense_Mutation p.C39Y 0.37 deleterious(0) probably_damaging(1) TCGA-34-2600-01 5 45353289 45353289 C T HCN1 Silent p.K430K 0.12 TCGA-34-2600-01 5 56233465 56233465 C T MIER3 Missense_Mutation p.D126N 0.81 deleterious(0.02) benign(0.338) TCGA-34-2600-01 5 74077738 74077738 C T FAM169A Silent p.K520K 0.82 TCGA-34-2600-01 5 76640675 76640675 C G PDE8B Intron 0.81 TCGA-34-2600-01 5 889243 889243 C A BRD9 Missense_Mutation p.D167Y 0.32 deleterious(0) probably_damaging(0.956) TCGA-34-2600-01 5 94253660 94253660 G C MCTP1 Missense_Mutation p.L431V 0.31 tolerated_low_confidence(0.59) benign(0.002) TCGA-34-2600-01 6 100061957 100061957 C G PRDM13 Silent p.L482L 0.85 TCGA-34-2600-01 6 10529097 10529097 C T GCNT2 5'UTR 0.05 TCGA-34-2600-01 6 109871331 109871331 G A AK9 Missense_Mutation p.H976Y 0.86 deleterious(0.01) possibly_damaging(0.901) TCGA-34-2600-01 6 119245043 119245043 C T MCM9 Missense_Mutation p.C185Y 0.05 deleterious(0) probably_damaging(0.965) TCGA-34-2600-01 6 123384862 123384862 A T CLVS2 Nonsense_Mutation p.K314* 0.89 TCGA-34-2600-01 6 133783758 133783758 G C EYA4 Splice_Site p.X194_splice 0.23 TCGA-34-2600-01 6 13486973 13486973 G C GFOD1 Missense_Mutation p.F50L 0.17 deleterious(0) possibly_damaging(0.78) TCGA-34-2600-01 6 136599579 136599579 G A BCLAF1 Missense_Mutation p.S147L 0.03 deleterious_low_confidence(0) unknown(0) TCGA-34-2600-01 6 155732410 155732410 C T NOX3 Missense_Mutation p.E465K 0.21 deleterious(0.05) benign(0.37) TCGA-34-2600-01 6 160969650 160969650 G T LPA Missense_Mutation p.T1672K 0.87 tolerated(0.94) benign(0.087) TCGA-34-2600-01 6 167592019 167592019 G A TCP10L2 Missense_Mutation p.E216K 0.03 tolerated(0.12) benign(0.058) TCGA-34-2600-01 6 169632236 169632236 C A THBS2 Nonsense_Mutation p.E664* 0.16 TCGA-34-2600-01 6 24505163 24505163 G T ALDH5A1 Missense_Mutation p.V226L 0.05 deleterious(0.01) possibly_damaging(0.593) TCGA-34-2600-01 6 26124397 26124397 C G HIST1H2AC 5'Flank 0.11 TCGA-34-2600-01 6 26200015 26200015 G A HIST1H2BF Missense_Mutation p.E77K 0.12 deleterious_low_confidence(0.04) possibly_damaging(0.849) TCGA-34-2600-01 6 27419815 27419815 C A ZNF184 Missense_Mutation p.G508V 0.86 deleterious(0) possibly_damaging(0.905) TCGA-34-2600-01 6 27419816 27419816 C T ZNF184 Missense_Mutation p.G508R 0.88 deleterious(0.02) probably_damaging(0.998) TCGA-34-2600-01 6 28121333 28121333 G C ZKSCAN8 Missense_Mutation p.Q425H 0.15 deleterious(0.05) possibly_damaging(0.572) TCGA-34-2600-01 6 28251600 28251600 G T PGBD1 Missense_Mutation p.A4S 0.03 deleterious_low_confidence(0.04) benign(0.251) TCGA-34-2600-01 6 29627371 29627371 G A MOG Missense_Mutation p.E122K 0.14 deleterious(0) probably_damaging(0.961) TCGA-34-2600-01 6 30297303 30297303 G A TRIM39 Missense_Mutation p.R70Q 0.21 deleterious(0) benign(0.362) TCGA-34-2600-01 6 31833700 31833700 G C SLC44A4 Silent p.P479P 0.15 TCGA-34-2600-01 6 32138934 32138934 C T AGPAT1 Intron 0.27 TCGA-34-2600-01 6 32847222 32847222 G A PPP1R2P1 RNA 0.15 TCGA-34-2600-01 6 36175169 36175169 C T BRPF3 Missense_Mutation p.A562V 0.07 deleterious(0) probably_damaging(0.963) TCGA-34-2600-01 6 49582568 49582568 T C RHAG Splice_Site p.X214_splice 0.91 TCGA-34-2600-01 6 49989594 49989594 C G DEFB110 Missense_Mutation p.A19P 0.73 tolerated(0.06) benign(0.001) TCGA-34-2600-01 6 51695669 51695669 G A PKHD1 Silent p.L2764L 0.23 TCGA-34-2600-01 6 52268234 52268234 G A PAQR8 Missense_Mutation p.E75K 0.07 deleterious(0) probably_damaging(1) TCGA-34-2600-01 6 73000470 73000470 T C RIMS1 Missense_Mutation p.S1215P 0.11 tolerated(0.08) possibly_damaging(0.827) TCGA-34-2600-01 6 74492445 74492445 C T CD109 Missense_Mutation p.P691L 0.07 deleterious(0) probably_damaging(0.947) TCGA-34-2600-01 6 76576653 76576653 A T MYO6 Missense_Mutation p.Q592L 0.91 tolerated(0.38) unknown(0) TCGA-34-2600-01 6 84333044 84333044 T A SNAP91 Missense_Mutation p.K261N 0.24 deleterious(0) unknown(0) TCGA-34-2600-01 7 100684579 100684579 C G MUC17 Silent p.A3294A 0.51 TCGA-34-2600-01 7 100686484 100686484 C G MUC17 Missense_Mutation p.I3929M 0.26 benign(0.006) TCGA-34-2600-01 7 101837153 101837153 G A CUX1 Missense_Mutation p.E381K 0.22 tolerated(0.44) unknown(0) TCGA-34-2600-01 7 117432529 117432529 G C CTTNBP2 Missense_Mutation p.L241V 0.26 deleterious(0) probably_damaging(0.998) TCGA-34-2600-01 7 124386653 124386653 C T GPR37 Missense_Mutation p.E590K 0.17 deleterious(0.02) probably_damaging(0.955) TCGA-34-2600-01 7 124404585 124404585 G C GPR37 Nonsense_Mutation p.S149* 0.03 TCGA-34-2600-01 7 126173442 126173442 G T GRM8 Missense_Mutation p.A665D 0.22 deleterious(0) probably_damaging(1) TCGA-34-2600-01 7 127222464 127222464 T C GCC1 Silent p.Q644Q 0.60 TCGA-34-2600-01 7 130370195 130370195 G A TSGA13 5'UTR 0.75 TCGA-34-2600-01 7 131870090 131870090 G A PLXNA4 Silent p.I1042I 0.08 TCGA-34-2600-01 7 142032300 142032300 C T TRBV7-1 Silent p.L40L 0.17 TCGA-34-2600-01 7 142364684 142364684 C G TRBV24-1 Missense_Mutation p.L107V 0.28 tolerated(1) benign(0.023) TCGA-34-2600-01 7 142423480 142423480 A G TRBV27 Missense_Mutation p.M46V 0.18 TCGA-34-2600-01 7 142563239 142563239 G A EPHB6 Missense_Mutation p.R319Q 0.13 tolerated(0.45) benign(0.006) TCGA-34-2600-01 7 143657394 143657394 G C OR2F1 Missense_Mutation p.E111Q 0.06 tolerated(0.06) probably_damaging(1) TCGA-34-2600-01 7 150325056 150325056 G A GIMAP6 Silent p.A210A 0.67 TCGA-34-2600-01 7 151879574 151879574 G A KMT2C Nonsense_Mutation p.Q1791* 0.60 TCGA-34-2600-01 7 154754061 154754061 G A PAXIP1 Silent p.F699F 0.18 TCGA-34-2600-01 7 156746852 156746852 G A NOM1 Missense_Mutation p.A390T 0.60 tolerated(0.36) benign(0.101) TCGA-34-2600-01 7 21658823 21658823 G C DNAH11 Missense_Mutation p.E1459Q 0.63 probably_damaging(0.999) TCGA-34-2600-01 7 44561319 44561319 G A NPC1L1 Missense_Mutation p.S982L 0.52 deleterious(0) probably_damaging(0.93) TCGA-34-2600-01 7 44737357 44737357 G T OGDH Silent p.L778L 0.85 TCGA-34-2600-01 7 56079530 56079530 G A PSPH Silent p.I201I 0.07 TCGA-34-2600-01 7 65557787 65557787 G C ASL Missense_Mutation p.W428S 0.03 deleterious(0.01) probably_damaging(0.984) TCGA-34-2600-01 7 66240357 66240357 C T KCTD7 Missense_Mutation p.S108F 0.37 deleterious(0) probably_damaging(0.931) TCGA-34-2600-01 7 71135073 71135073 T C WBSCR17 Silent p.N461N 0.26 TCGA-34-2600-01 7 75171274 75171274 C A HIP1 Silent p.T972T 0.64 TCGA-34-2600-01 7 82072711 82072711 G T CACNA2D1 Nonsense_Mutation p.S22* 0.17 TCGA-34-2600-01 7 88963696 88963696 C G ZNF804B Missense_Mutation p.T467R 0.05 deleterious(0) probably_damaging(0.999) TCGA-34-2600-01 7 92146608 92146608 G C PEX1 Silent p.L407L 0.12 TCGA-34-2600-01 7 92166182 92166182 A T RBM48 Silent p.P345P 0.57 TCGA-34-2600-01 7 96302988 96302988 T C SHFM1 3'UTR 0.22 TCGA-34-2600-01 8 101052292 101052292 A C RGS22 Silent p.G654G 0.60 TCGA-34-2600-01 8 110451174 110451174 C G PKHD1L1 Missense_Mutation p.T1270R 0.69 deleterious(0.05) benign(0.111) TCGA-34-2600-01 8 124658160 124658160 T G KLHL38 Missense_Mutation p.K522T 0.40 deleterious(0) probably_damaging(0.984) TCGA-34-2600-01 8 131848603 131848603 C T ADCY8 Missense_Mutation p.M865I 0.51 tolerated(0.14) possibly_damaging(0.519) TCGA-34-2600-01 8 139144901 139144901 C G FAM135B Missense_Mutation p.V1386L 0.37 deleterious(0.01) possibly_damaging(0.6) TCGA-34-2600-01 8 139163465 139163465 C T FAM135B Missense_Mutation p.D1085N 0.38 deleterious(0.01) benign(0.091) TCGA-34-2600-01 8 139165256 139165256 T A FAM135B Missense_Mutation p.T488S 0.30 tolerated(0.13) benign(0.164) TCGA-34-2600-01 8 141828991 141828991 C A PTK2 Missense_Mutation p.K259N 0.16 tolerated(0.14) benign(0.362) TCGA-34-2600-01 8 144946539 144946539 C T EPPK1 Missense_Mutation p.E295K 0.16 benign(0.121) TCGA-34-2600-01 8 145112502 145112502 C T OPLAH Missense_Mutation p.R424H 0.10 tolerated(0.17) benign(0.136) TCGA-34-2600-01 8 145138688 145138688 C G GPAA1 Silent p.L146L 0.41 TCGA-34-2600-01 8 145664053 145664053 G T TONSL Silent p.R516R 0.40 TCGA-34-2600-01 8 22141783 22141783 C T PIWIL2 Silent p.F247F 0.17 TCGA-34-2600-01 8 30704639 30704639 C A TEX15 Missense_Mutation p.S632I 0.44 tolerated(0.14) possibly_damaging(0.748) TCGA-34-2600-01 8 39537690 39537690 C G ADAM18 Nonsense_Mutation p.S589* 0.32 TCGA-34-2600-01 8 41798403 41798403 G C KAT6A Nonsense_Mutation p.S999* 0.04 TCGA-34-2600-01 8 65493498 65493498 C T BHLHE22 Missense_Mutation p.R51W 0.50 deleterious_low_confidence(0) possibly_damaging(0.793) TCGA-34-2600-01 8 72754870 72754870 T A MSC 3'UTR 0.60 TCGA-34-2600-01 8 77619827 77619827 A T ZFHX4 Silent p.L879L 0.32 TCGA-34-2600-01 8 77768512 77768512 C T ZFHX4 Missense_Mutation p.P3119S 0.30 benign(0.143) TCGA-34-2600-01 8 77768513 77768513 C T ZFHX4 Missense_Mutation p.P3119L 0.30 possibly_damaging(0.748) TCGA-34-2600-01 8 95895093 95895093 C T CCNE2 Missense_Mutation p.D287N 0.53 tolerated(0.45) benign(0.001) TCGA-34-2600-01 9 101830921 101830921 G C COL15A1 Missense_Mutation p.D1308H 0.47 deleterious(0) probably_damaging(0.995) TCGA-34-2600-01 9 107360818 107360818 G T OR13C5 Missense_Mutation p.P293T 0.06 deleterious(0) probably_damaging(0.999) TCGA-34-2600-01 9 107361117 107361117 G C OR13C5 Nonsense_Mutation p.S193* 0.06 TCGA-34-2600-01 9 114305440 114305440 C T ZNF483 Missense_Mutation p.S742F 0.05 deleterious(0) possibly_damaging(0.485) TCGA-34-2600-01 9 116346524 116346524 G T RGS3 Missense_Mutation p.E944D 0.26 deleterious(0) probably_damaging(0.971) TCGA-34-2600-01 9 119249649 119249649 G T ASTN2 Missense_Mutation p.D1111E 0.50 deleterious(0) unknown(0) TCGA-34-2600-01 9 119460298 119460298 G T TRIM32 Nonsense_Mutation p.E93* 0.04 TCGA-34-2600-01 9 33047236 33047236 G A SMU1 3'UTR 0.11 TCGA-34-2600-01 9 34996540 34996540 C A DNAJB5 Missense_Mutation p.R278S 0.84 tolerated(0.05) possibly_damaging(0.647) TCGA-34-2600-01 9 35608409 35608409 T A TESK1 Silent p.R301R 0.38 TCGA-34-2600-01 9 38396569 38396569 G A ALDH1B1 Missense_Mutation p.G275D 0.74 deleterious(0) benign(0.275) TCGA-34-2600-01 9 70177156 70177156 G T FOXD4L5 Silent p.P276P 0.27 TCGA-34-2600-01 9 74340563 74340563 G C TMEM2 Silent p.L704L 0.34 TCGA-34-2600-01 9 75782448 75782448 G T ANXA1 Nonsense_Mutation p.E280* 0.48 TCGA-34-2600-01 9 98232122 98232122 C G PTCH1 Missense_Mutation p.R607T 0.03 deleterious(0) possibly_damaging(0.587) TCGA-34-2600-01 X 101581593 101581593 A C NXF2 3'UTR 0.23 TCGA-34-2600-01 X 101857187 101857187 G A ARMCX5 Missense_Mutation p.A40T 0.67 tolerated(0.13) benign(0.003) TCGA-34-2600-01 X 101912007 101912007 C T GPRASP1 Missense_Mutation p.P1056S 0.19 deleterious(0.01) possibly_damaging(0.766) TCGA-34-2600-01 X 104984616 104984616 C A IL1RAPL2 Missense_Mutation p.A327E 0.52 tolerated(0.14) possibly_damaging(0.745) TCGA-34-2600-01 X 105450780 105450780 A C MUM1L1 Missense_Mutation p.Q452P 0.23 tolerated(0.28) possibly_damaging(0.684) TCGA-34-2600-01 X 118109537 118109537 A T LONRF3 Missense_Mutation p.K265M 0.69 deleterious(0.03) probably_damaging(0.909) TCGA-34-2600-01 X 118243104 118243104 C T KIAA1210 Missense_Mutation p.E238K 0.10 tolerated(0.1) benign(0.003) TCGA-34-2600-01 X 118604025 118604025 G C SLC25A5 Missense_Mutation p.K171N 0.55 tolerated(0.31) benign(0.189) TCGA-34-2600-01 X 118985785 118985785 G A UPF3B Missense_Mutation p.H70Y 0.22 deleterious(0) probably_damaging(0.91) TCGA-34-2600-01 X 119004853 119004853 C T RNF113A Missense_Mutation p.G242S 0.05 deleterious(0.04) benign(0.086) TCGA-34-2600-01 X 119509334 119509334 C A ATP1B4 Missense_Mutation p.R224S 0.62 deleterious(0) probably_damaging(1) TCGA-34-2600-01 X 120183012 120183012 G A GLUD2 Missense_Mutation p.E492K 0.05 tolerated(0.16) benign(0.007) TCGA-34-2600-01 X 122840735 122840735 C T THOC2 Silent p.Q65Q 0.43 TCGA-34-2600-01 X 123224561 123224561 C T STAG2 Silent p.F1138F 0.03 TCGA-34-2600-01 X 125298768 125298768 C T DCAF12L2 Silent p.Q380Q 0.04 TCGA-34-2600-01 X 130416701 130416701 G T IGSF1 Silent p.P321P 0.44 TCGA-34-2600-01 X 132834024 132834024 G T GPC3 Silent p.R378R 0.37 TCGA-34-2600-01 X 133699909 133699909 A C PLAC1 3'UTR 0.52 TCGA-34-2600-01 X 135428578 135428578 G C GPR112 Missense_Mutation p.E905Q 0.04 deleterious(0.03) benign(0.311) TCGA-34-2600-01 X 135956578 135956578 G T RBMX Missense_Mutation p.P300H 0.33 deleterious(0) probably_damaging(0.91) TCGA-34-2600-01 X 135961272 135961272 C T RBMX Missense_Mutation p.M40I 0.16 tolerated(0.31) probably_damaging(0.968) TCGA-34-2600-01 X 138670585 138670585 C G MCF2 Missense_Mutation p.D871H 0.19 deleterious(0) probably_damaging(0.933) TCGA-34-2600-01 X 139866206 139866206 G A CDR1 Missense_Mutation p.P109L 0.31 tolerated(1) benign(0) TCGA-34-2600-01 X 147106426 147106426 T C FMR1NB Missense_Mutation p.V225A 0.55 deleterious(0.01) benign(0.294) TCGA-34-2600-01 X 148796226 148796226 C G MAGEA11 Missense_Mutation p.P61R 0.21 tolerated_low_confidence(0.3) probably_damaging(0.937) TCGA-34-2600-01 X 149999760 149999760 C T CD99L2 Missense_Mutation p.G25E 0.23 deleterious(0) probably_damaging(0.999) TCGA-34-2600-01 X 151533043 151533043 C T GABRA3 5'UTR 0.05 TCGA-34-2600-01 X 151935180 151935180 A G MAGEA3 3'UTR 0.30 TCGA-34-2600-01 X 152225372 152225372 G A PNMA3 5'UTR 0.04 TCGA-34-2600-01 X 152613051 152613051 G A ZNF275 Missense_Mutation p.R303Q 0.19 deleterious(0.05) probably_damaging(0.993) TCGA-34-2600-01 X 153043732 153043732 A C PLXNB3 Missense_Mutation p.K1832T 0.28 deleterious(0) probably_damaging(1) TCGA-34-2600-01 X 154493444 154493444 C A RAB39B Missense_Mutation p.D44Y 0.31 deleterious(0) probably_damaging(0.996) TCGA-34-2600-01 X 155254980 155254980 C G WASH6P RNA 0.09 TCGA-34-2600-01 X 19713856 19713856 C T SH3KBP1 Missense_Mutation p.E132K 0.03 deleterious(0) probably_damaging(0.999) TCGA-34-2600-01 X 19764486 19764486 C A SH3KBP1 Missense_Mutation p.S79I 0.72 deleterious(0) possibly_damaging(0.51) TCGA-34-2600-01 X 21608737 21608737 A C CNKSR2 Missense_Mutation p.K552N 0.71 deleterious(0.02) probably_damaging(0.917) TCGA-34-2600-01 X 21886690 21886690 C A MBTPS2 Missense_Mutation p.T259N 0.73 deleterious(0) probably_damaging(0.917) TCGA-34-2600-01 X 21896174 21896174 G C MBTPS2 Missense_Mutation p.D329H 0.03 tolerated(0.07) benign(0.211) TCGA-34-2600-01 X 21896718 21896718 C T MBTPS2 Missense_Mutation p.S390F 0.33 deleterious(0.01) possibly_damaging(0.682) TCGA-34-2600-01 X 21995302 21995302 A T SMS Missense_Mutation p.K151N 0.04 deleterious(0) probably_damaging(0.983) TCGA-34-2600-01 X 27766230 27766230 C A DCAF8L2 Silent p.G406G 0.76 TCGA-34-2600-01 X 29972810 29972810 G T IL1RAPL1 Splice_Site p.X458_splice 0.28 TCGA-34-2600-01 X 30326750 30326750 C A NR0B1 Missense_Mutation p.R244L 0.64 deleterious(0) probably_damaging(0.949) TCGA-34-2600-01 X 46918510 46918510 G T JADE3 3'UTR 0.59 TCGA-34-2600-01 X 49089819 49089819 C - CACNA1F 5'UTR 0.41 TCGA-34-2600-01 X 50130570 50130570 T C DGKK RNA 0.22 TCGA-34-2600-01 X 53587154 53587154 C A HUWE1 Silent p.L2577L 0.30 TCGA-34-2600-01 X 54482795 54482795 C T FGD1 Missense_Mutation p.R567Q 0.32 tolerated(0.06) benign(0.05) TCGA-34-2600-01 X 62944454 62944454 C A ARHGEF9 Missense_Mutation p.Q49H 0.60 deleterious(0.03) possibly_damaging(0.871) TCGA-34-2600-01 X 64949369 64949369 G C MSN Missense_Mutation p.D88H 0.54 deleterious(0) probably_damaging(0.999) TCGA-34-2600-01 X 69353813 69353813 G A IGBP1 Missense_Mutation p.E6K 0.06 tolerated(0.14) benign(0.009) TCGA-34-2600-01 X 69871348 69871348 G A TEX11 Nonsense_Mutation p.Q494* 0.06 TCGA-34-2604-01 10 102896514 102896514 G T TLX1 Missense_Mutation p.Q279H 0.31 deleterious(0.04) benign(0.178) TCGA-34-2604-01 10 103826300 103826300 G T HPS6 Nonsense_Mutation p.E357* 0.08 TCGA-34-2604-01 10 104174967 104174967 C G PSD Missense_Mutation p.Q259H 0.08 tolerated(0.22) benign(0.001) TCGA-34-2604-01 10 104592312 104592312 G A CYP17A1 Silent p.P365P 0.25 TCGA-34-2604-01 10 116925368 116925368 C A ATRNL1 Missense_Mutation p.P352H 0.18 tolerated(0.17) probably_damaging(0.983) TCGA-34-2604-01 10 118306917 118306917 C T PNLIP Missense_Mutation p.T53I 0.09 tolerated(0.12) possibly_damaging(0.646) TCGA-34-2604-01 10 123658367 123658367 C A ATE1 Missense_Mutation p.G311W 0.24 deleterious(0.02) possibly_damaging(0.525) TCGA-34-2604-01 10 123892151 123892151 G T TACC2 Missense_Mutation p.Q1867H 0.17 benign(0.071) TCGA-34-2604-01 10 135211936 135211936 C T MTG1 Intron 0.28 TCGA-34-2604-01 10 15559138 15559138 G C ITGA8 3'UTR 0.11 TCGA-34-2604-01 10 15559223 15559223 G - ITGA8 Frame_Shift_Del p.R1043Dfs*7 0.20 TCGA-34-2604-01 10 21102881 21102881 T C NEBL Missense_Mutation p.N778S 0.10 tolerated(0.12) benign(0.053) TCGA-34-2604-01 10 25887400 25887400 G T GPR158 Missense_Mutation p.D949Y 0.16 deleterious(0.01) possibly_damaging(0.765) TCGA-34-2604-01 10 26822368 26822368 A G APBB1IP Missense_Mutation p.N272D 0.08 deleterious(0.04) probably_damaging(0.914) TCGA-34-2604-01 10 27687737 27687737 G C PTCHD3 Missense_Mutation p.T597R 0.30 deleterious(0) probably_damaging(0.983) TCGA-34-2604-01 10 29813420 29813420 G T SVIL Missense_Mutation p.T856K 0.13 deleterious(0) probably_damaging(1) TCGA-34-2604-01 10 32856597 32856597 G T CCDC7 Splice_Site p.X400_splice 0.08 TCGA-34-2604-01 10 32856598 32856598 G A CCDC7 Missense_Mutation p.E400K 0.08 deleterious(0.03) probably_damaging(0.994) TCGA-34-2604-01 10 35324135 35324135 C T CUL2 Missense_Mutation p.G342S 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-34-2604-01 10 38406400 38406400 G - ZNF37A Frame_Shift_Del p.K107Nfs*4 0.08 TCGA-34-2604-01 10 38407496 38407496 G T ZNF37A Missense_Mutation p.G473W 0.14 deleterious(0) probably_damaging(1) TCGA-34-2604-01 10 44052604 44052604 G T ZNF239 Silent p.I308I 0.16 TCGA-34-2604-01 10 47086969 47086969 G A NPY4R Silent p.L62L 0.12 TCGA-34-2604-01 10 48371518 48371518 G T ZNF488 Missense_Mutation p.R329L 0.12 deleterious(0) probably_damaging(0.997) TCGA-34-2604-01 10 48382063 48382063 G A RBP3 Missense_Mutation p.R1196C 0.25 deleterious(0) possibly_damaging(0.898) TCGA-34-2604-01 10 50599254 50599254 G C DRGX Missense_Mutation p.R35G 0.17 deleterious(0) probably_damaging(0.952) TCGA-34-2604-01 10 55568897 55568897 G T PCDH15 Missense_Mutation p.S572Y 0.16 deleterious_low_confidence(0) unknown(0) TCGA-34-2604-01 10 64966548 64966548 T A JMJD1C Missense_Mutation p.E1627D 0.09 tolerated(0.15) benign(0.012) TCGA-34-2604-01 10 72538257 72538257 A G TBATA Intron 0.11 TCGA-34-2604-01 10 73051187 73051187 A C UNC5B Splice_Site p.X432_splice 0.11 TCGA-34-2604-01 10 73538044 73538044 C A C10orf54 5'Flank 0.15 TCGA-34-2604-01 10 87362007 87362007 G T GRID1 3'UTR 0.33 TCGA-34-2604-01 10 91162569 91162569 T A IFIT1 Silent p.A179A 0.09 TCGA-34-2604-01 10 98105773 98105773 G A OPALIN Silent p.D117D 0.08 TCGA-34-2604-01 10 98743992 98743992 G T C10orf12 Missense_Mutation p.A949S 0.21 deleterious(0.04) possibly_damaging(0.453) TCGA-34-2604-01 10 98790525 98790525 G C SLIT1 Silent p.S857S 0.27 TCGA-34-2604-01 11 1011309 1011309 G T AP2A2 3'UTR 0.34 TCGA-34-2604-01 11 105948332 105948332 A T AASDHPPT 5'UTR 0.40 TCGA-34-2604-01 11 116745953 116745953 C A SIK3 Nonsense_Mutation p.E392* 0.21 TCGA-34-2604-01 11 119054158 119054158 G T NLRX1 3'UTR 0.36 TCGA-34-2604-01 11 119244222 119244222 G T USP2 5'UTR 0.10 TCGA-34-2604-01 11 123886528 123886528 T C OR10G4 Silent p.L83L 0.21 TCGA-34-2604-01 11 123893876 123893876 C T OR10G9 Missense_Mutation p.L53F 0.27 deleterious(0) probably_damaging(0.999) TCGA-34-2604-01 11 124120459 124120459 A C OR8G1 Missense_Mutation p.I13L 0.29 tolerated_low_confidence(0.05) benign(0.018) TCGA-34-2604-01 11 124252985 124252985 A C OR8B2 Missense_Mutation p.F85L 0.31 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-34-2604-01 11 128710147 128710147 T A KCNJ1 Missense_Mutation p.T17S 0.32 tolerated_low_confidence(0.25) benign(0.019) TCGA-34-2604-01 11 18731006 18731006 G T IGSF22 Silent p.R976R 0.28 TCGA-34-2604-01 11 20385921 20385921 A T HTATIP2 Missense_Mutation p.K80N 0.06 deleterious(0.02) benign(0.093) TCGA-34-2604-01 11 22391664 22391664 G T SLC17A6 Missense_Mutation p.W324L 0.27 deleterious(0) probably_damaging(0.989) TCGA-34-2604-01 11 26677994 26677994 T G ANO3 Missense_Mutation p.L910R 0.26 deleterious(0) probably_damaging(1) TCGA-34-2604-01 11 43283837 43283837 A G HNRNPKP3 RNA 0.19 TCGA-34-2604-01 11 4510757 4510757 G A OR52K1 Silent p.V209V 0.26 TCGA-34-2604-01 11 45924721 45924721 G T MAPK8IP1 Missense_Mutation p.R468L 0.35 tolerated(0.07) possibly_damaging(0.866) TCGA-34-2604-01 11 46724278 46724278 G A ZNF408 Missense_Mutation p.D119N 0.20 tolerated(0.09) possibly_damaging(0.617) TCGA-34-2604-01 11 47359041 47359041 G A MYBPC3 Missense_Mutation p.R835C 0.34 deleterious(0) probably_damaging(0.957) TCGA-34-2604-01 11 4928797 4928797 G T OR51A7 Missense_Mutation p.L66F 0.30 deleterious(0) probably_damaging(0.991) TCGA-34-2604-01 11 533316 533316 C - HRAS Intron 0.24 TCGA-34-2604-01 11 5474903 5474903 T A OR51I2 Missense_Mutation p.F62Y 0.32 deleterious(0) benign(0.146) TCGA-34-2604-01 11 57958330 57958330 A T OR9Q2 Missense_Mutation p.Y123F 0.38 tolerated(0.1) probably_damaging(0.911) TCGA-34-2604-01 11 5878131 5878131 G A OR52E8 Missense_Mutation p.R268C 0.30 deleterious(0.03) benign(0.248) TCGA-34-2604-01 11 58979611 58979611 G T MPEG1 Missense_Mutation p.A243D 0.31 tolerated(0.07) benign(0.274) TCGA-34-2604-01 11 59224601 59224601 C G OR4D6 Missense_Mutation p.H56Q 0.27 tolerated(0.12) probably_damaging(0.996) TCGA-34-2604-01 11 60183927 60183927 C T MS4A14 Nonsense_Mutation p.Q529* 0.31 TCGA-34-2604-01 11 65310943 65310943 A G LTBP3 Missense_Mutation p.C811R 0.29 deleterious(0) possibly_damaging(0.879) TCGA-34-2604-01 11 65403019 65403019 G A PCNXL3 Missense_Mutation p.R1735H 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-34-2604-01 11 6913351 6913351 G T OR2D2 Nonsense_Mutation p.C127* 0.28 TCGA-34-2604-01 11 7846889 7846889 C A OR5P3 Missense_Mutation p.V211L 0.33 tolerated(0.35) benign(0.042) TCGA-34-2604-01 11 82561406 82561406 C T PRCP Missense_Mutation p.A206T 0.32 deleterious(0.02) probably_damaging(0.941) TCGA-34-2604-01 11 85429916 85429916 C A SYTL2 Intron 0.45 TCGA-34-2604-01 11 93104213 93104213 C A CCDC67 Missense_Mutation p.Q186K 0.23 tolerated(0.06) probably_damaging(0.996) TCGA-34-2604-01 12 104122648 104122648 G - STAB2 Frame_Shift_Del p.G1653Vfs*2 0.09 TCGA-34-2604-01 12 105380245 105380245 G T C12orf45 Missense_Mutation p.G39C 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-34-2604-01 12 108589687 108589687 C G WSCD2 Nonsense_Mutation p.Y26* 0.09 TCGA-34-2604-01 12 11091178 11091178 T C TAS2R14 Missense_Mutation p.K210R 0.27 tolerated(0.26) benign(0.405) TCGA-34-2604-01 12 113545008 113545008 G C RASAL1 Silent p.G518G 0.13 TCGA-34-2604-01 12 113873287 113873287 G T SDSL Missense_Mutation p.M199I 0.30 deleterious(0.04) benign(0.222) TCGA-34-2604-01 12 114804142 114804142 G T TBX5 Missense_Mutation p.N270K 0.12 tolerated(0.07) benign(0.08) TCGA-34-2604-01 12 124114996 124114996 G C EIF2B1 Missense_Mutation p.S67C 0.33 deleterious(0) probably_damaging(0.999) TCGA-34-2604-01 12 124236880 124236880 G T ATP6V0A2 Silent p.L702L 0.30 TCGA-34-2604-01 12 40001403 40001403 C A ABCD2 Nonsense_Mutation p.E412* 0.15 TCGA-34-2604-01 12 45803202 45803202 G A ANO6 Missense_Mutation p.R669Q 0.11 tolerated(0.27) probably_damaging(1) TCGA-34-2604-01 12 51566113 51566113 C G TFCP2 Missense_Mutation p.Q31H 0.16 tolerated(0.06) possibly_damaging(0.764) TCGA-34-2604-01 12 52312769 52312769 G A ACVRL1 Missense_Mutation p.G416D 0.08 deleterious(0) probably_damaging(1) TCGA-34-2604-01 12 52863660 52863660 C G KRT6C Missense_Mutation p.Q406H 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-34-2604-01 12 54379133 54379133 C G HOXC10 Silent p.G30G 0.15 TCGA-34-2604-01 12 55615277 55615277 A G OR10A7 Missense_Mutation p.M157V 0.12 tolerated(1) benign(0.058) TCGA-34-2604-01 12 55641801 55641801 G T OR6C74 Missense_Mutation p.V244L 0.14 deleterious_low_confidence(0.01) benign(0.147) TCGA-34-2604-01 12 55726210 55726210 G C OR6C3 Missense_Mutation p.M242I 0.17 deleterious_low_confidence(0.04) benign(0.042) TCGA-34-2604-01 12 57843082 57843082 T A INHBC Silent p.T112T 0.11 TCGA-34-2604-01 12 72667031 72667031 T A TRHDE Missense_Mutation p.M158K 0.09 deleterious(0) possibly_damaging(0.653) TCGA-34-2604-01 12 72667032 72667032 G T TRHDE Missense_Mutation p.M158I 0.09 tolerated(0.08) benign(0.035) TCGA-34-2604-01 12 7528609 7528609 G T CD163L1 Silent p.A791A 0.24 TCGA-34-2604-01 12 78530955 78530955 A T NAV3 Splice_Site p.X1481_splice 0.12 TCGA-34-2604-01 12 81833826 81833826 C A PPFIA2 Splice_Site p.X191_splice 0.14 TCGA-34-2604-01 12 8211827 8211827 T G C3AR1 Missense_Mutation p.N319H 0.29 tolerated(0.49) benign(0.232) TCGA-34-2604-01 12 8688760 8688760 A - CLEC4E Frame_Shift_Del p.F138Lfs*21 0.24 TCGA-34-2604-01 12 88448128 88448128 A C CEP290 Silent p.L2341L 0.30 TCGA-34-2604-01 12 91449451 91449451 G T KERA Missense_Mutation p.A203D 0.23 tolerated(0.62) benign(0.094) TCGA-34-2604-01 12 95867853 95867853 C T METAP2 5'UTR 0.11 TCGA-34-2604-01 12 98848839 98848839 G A SLC9A7P1 RNA 0.39 TCGA-34-2604-01 12 99052997 99052997 C T APAF1 Silent p.L196L 0.30 TCGA-34-2604-01 12 99793425 99793425 C G ANKS1B Missense_Mutation p.E580D 0.09 tolerated(0.13) benign(0.05) TCGA-34-2604-01 13 113516824 113516824 G C ATP11A Missense_Mutation p.A976P 0.19 deleterious(0.01) possibly_damaging(0.885) TCGA-34-2604-01 13 21381615 21381615 T A XPO4 Nonsense_Mutation p.R600* 0.20 TCGA-34-2604-01 13 21751268 21751268 C T MRP63 Silent p.F71F 0.15 TCGA-34-2604-01 13 38158186 38158186 A T POSTN Missense_Mutation p.V388E 0.16 deleterious(0) possibly_damaging(0.742) TCGA-34-2604-01 13 48528603 48528603 C A SUCLA2 Missense_Mutation p.D298Y 0.26 deleterious(0) probably_damaging(0.998) TCGA-34-2604-01 13 50296094 50296094 C A KPNA3 Missense_Mutation p.Q241H 0.28 tolerated(0.06) possibly_damaging(0.739) TCGA-34-2604-01 13 77667371 77667371 T A MYCBP2 Silent p.I3394I 0.27 TCGA-34-2604-01 13 77738646 77738646 T G MYCBP2 Missense_Mutation p.N2126H 0.21 benign(0.051) TCGA-34-2604-01 13 84453547 84453547 G T SLITRK1 3'UTR 0.23 TCGA-34-2604-01 13 96637559 96637559 T A UGGT2 Intron 0.15 TCGA-34-2604-01 14 101515063 101515063 G T MIR544A RNA 0.09 TCGA-34-2604-01 14 104571748 104571748 C A ASPG Silent p.G378G 0.12 TCGA-34-2604-01 14 105419321 105419321 C A AHNAK2 Missense_Mutation p.D823Y 0.11 probably_damaging(0.993) TCGA-34-2604-01 14 106641812 106641812 C A IGHV1-18 Silent p.G34G 0.15 TCGA-34-2604-01 14 106967186 106967186 G T IGHV1-46 Missense_Mutation p.P72T 0.10 tolerated(0.17) benign(0.11) TCGA-34-2604-01 14 107199126 107199126 A T IGHV3-72 Missense_Mutation p.W55R 0.12 deleterious_low_confidence(0.01) benign(0.265) TCGA-34-2604-01 14 19563539 19563539 T C POTEG Silent p.N351N 0.11 TCGA-34-2604-01 14 20216334 20216334 C G OR4Q3 Missense_Mutation p.L250V 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-34-2604-01 14 21052444 21052444 G T RNASE11 Missense_Mutation p.L64I 0.15 tolerated(0.08) benign(0.037) TCGA-34-2604-01 14 21771641 21771641 A T RPGRIP1 Nonsense_Mutation p.K247* 0.13 TCGA-34-2604-01 14 22090497 22090497 G T TRAV1-1 Missense_Mutation p.V35F 0.10 tolerated(0.26) possibly_damaging(0.582) TCGA-34-2604-01 14 22538967 22538967 G A TRAV22 Silent p.L5L 0.20 TCGA-34-2604-01 14 22600529 22600529 C A TRAV8-7 Silent p.V5V 0.11 TCGA-34-2604-01 14 22938573 22938573 A G TRDV3 Missense_Mutation p.F12L 0.18 tolerated(0.74) benign(0) TCGA-34-2604-01 14 23344911 23344911 G T LRP10 Missense_Mutation p.G252C 0.10 deleterious(0) probably_damaging(0.991) TCGA-34-2604-01 14 42356774 42356774 C T LRFN5 Missense_Mutation p.P316S 0.11 deleterious(0) probably_damaging(1) TCGA-34-2604-01 14 42361027 42361027 G A LRFN5 Missense_Mutation p.E654K 0.16 tolerated_low_confidence(0.16) benign(0) TCGA-34-2604-01 14 45374749 45374749 A C C14orf28 Missense_Mutation p.K310T 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.859) TCGA-34-2604-01 14 45606382 45606382 G T FANCM Nonsense_Mutation p.E207* 0.11 TCGA-34-2604-01 14 53570447 53570447 C G DDHD1 Missense_Mutation p.Q322H 0.07 deleterious(0.03) benign(0.289) TCGA-34-2604-01 14 58563634 58563634 C T C14orf37 Missense_Mutation p.E633K 0.07 deleterious(0.03) benign(0.012) TCGA-34-2604-01 14 59950741 59950741 C A L3HYPDH Missense_Mutation p.E98D 0.18 deleterious(0.04) benign(0.021) TCGA-34-2604-01 14 60591903 60591903 G C PCNXL4 Missense_Mutation p.W771S 0.10 deleterious(0.01) possibly_damaging(0.553) TCGA-34-2604-01 14 61180370 61180370 G A SIX4 Missense_Mutation p.P701S 0.15 tolerated_low_confidence(0.15) benign(0.049) TCGA-34-2604-01 14 62547879 62547879 C G SYT16 Missense_Mutation p.R441G 0.11 tolerated(0.17) benign(0.037) TCGA-34-2604-01 14 63416962 63416962 C A KCNH5 Missense_Mutation p.V420L 0.09 tolerated(0.17) benign(0.065) TCGA-34-2604-01 14 73543033 73543033 C T RBM25 Missense_Mutation p.P38L 0.06 probably_damaging(0.996) TCGA-34-2604-01 14 74823657 74823657 A T VRTN Missense_Mutation p.E57D 0.10 tolerated(0.13) benign(0.04) TCGA-34-2604-01 14 76238111 76238111 C T TTLL5 Missense_Mutation p.L684F 0.11 deleterious(0) probably_damaging(0.993) TCGA-34-2604-01 14 79746519 79746519 C A NRXN3 Intron 0.13 TCGA-34-2604-01 14 88477635 88477635 C A GPR65 Silent p.V148V 0.11 TCGA-34-2604-01 14 88693788 88693788 C A KCNK10 Missense_Mutation p.L204F 0.10 deleterious(0.05) probably_damaging(1) TCGA-34-2604-01 14 89202830 89202830 C G EML5 Silent p.V309V 0.13 TCGA-34-2604-01 14 91787477 91787477 T A CCDC88C Missense_Mutation p.Q505L 0.16 deleterious(0.02) probably_damaging(0.981) TCGA-34-2604-01 14 93712533 93712533 C G BTBD7 Missense_Mutation p.A741P 0.11 tolerated(0.17) possibly_damaging(0.559) TCGA-34-2604-01 14 94173129 94173129 G A UNC79 Missense_Mutation p.G2419D 0.11 tolerated(0.3) possibly_damaging(0.479) TCGA-34-2604-01 14 94914663 94914663 C G SERPINA11 Missense_Mutation p.R150P 0.09 tolerated(0.13) benign(0.428) TCGA-34-2604-01 14 96010321 96010321 A T GLRX5 Missense_Mutation p.Q111H 0.17 deleterious(0) probably_damaging(0.999) TCGA-34-2604-01 14 96730563 96730563 C T BDKRB1 Missense_Mutation p.P182S 0.08 deleterious(0.03) probably_damaging(0.965) TCGA-34-2604-01 14 96922765 96922765 C G AK7 Missense_Mutation p.H394D 0.06 deleterious(0) probably_damaging(0.979) TCGA-34-2604-01 14 99182672 99182672 G T C14orf177 Missense_Mutation p.Q48H 0.16 tolerated_low_confidence(0.16) benign(0.03) TCGA-34-2604-01 15 101938622 101938622 T C PCSK6 Missense_Mutation p.Y327C 0.10 tolerated(0.1) possibly_damaging(0.649) TCGA-34-2604-01 15 25959115 25959115 C A ATP10A Nonsense_Mutation p.E684* 0.11 TCGA-34-2604-01 15 33927897 33927897 G T RYR3 Missense_Mutation p.K1086N 0.17 probably_damaging(1) TCGA-34-2604-01 15 40764548 40764548 G A CHST14 3'UTR 0.10 TCGA-34-2604-01 15 41227130 41227130 C T DLL4 Missense_Mutation p.P352L 0.14 deleterious(0.01) possibly_damaging(0.791) TCGA-34-2604-01 15 43896908 43896908 C G STRC Missense_Mutation p.C1356S 0.17 deleterious(0) probably_damaging(0.995) TCGA-34-2604-01 15 45983388 45983388 C A SQRDL 3'UTR 0.20 TCGA-34-2604-01 15 49288721 49288721 A - SECISBP2L Frame_Shift_Del p.A823Qfs*12 0.13 TCGA-34-2604-01 15 53081011 53081011 C A ONECUT1 Silent p.P357P 0.22 TCGA-34-2604-01 15 54916045 54916045 T A UNC13C Missense_Mutation p.F2084L 0.22 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-34-2604-01 15 57730714 57730714 A G CGNL1 Missense_Mutation p.N173D 0.22 tolerated(0.28) benign(0.002) TCGA-34-2604-01 15 65054588 65054588 C A RBPMS2 Intron 0.11 TCGA-34-2604-01 15 65558918 65558918 C G PARP16 Silent p.L167L 0.18 TCGA-34-2604-01 15 65667696 65667696 C A IGDCC3 Missense_Mutation p.D50Y 0.26 deleterious(0) probably_damaging(0.998) TCGA-34-2604-01 15 73566288 73566288 A T NEO1 Silent p.A1034A 0.09 TCGA-34-2604-01 15 74239441 74239441 C T LOXL1 Silent p.Y461Y 0.18 TCGA-34-2604-01 15 75498586 75498586 G A C15orf39 Nonsense_Mutation p.W66* 0.06 TCGA-34-2604-01 15 76074676 76074676 T C RN7SL319P 5'Flank 0.12 TCGA-34-2604-01 15 77906753 77906753 G A LINGO1 Missense_Mutation p.A499V 0.16 deleterious(0) probably_damaging(0.958) TCGA-34-2604-01 15 78633494 78633494 C G CRABP1 Silent p.R60R 0.27 TCGA-34-2604-01 15 80215331 80215331 T A C15orf37 Silent p.T72T 0.11 TCGA-34-2604-01 15 88420091 88420091 T A NTRK3 3'UTR 0.43 TCGA-34-2604-01 15 88420092 88420092 T A NTRK3 3'UTR 0.43 TCGA-34-2604-01 15 90903717 90903717 C T ZNF774 Silent p.D218D 0.09 TCGA-34-2604-01 15 91801730 91801730 C G SV2B Silent p.T288T 0.28 TCGA-34-2604-01 16 19651421 19651421 A T C16orf62 Nonsense_Mutation p.K684* 0.22 TCGA-34-2604-01 16 20043777 20043777 G T GPR139 Silent p.T114T 0.23 TCGA-34-2604-01 16 23359927 23359927 G C SCNN1B Missense_Mutation p.V3L 0.16 tolerated_low_confidence(0.69) benign(0.004) TCGA-34-2604-01 16 23625324 23625324 C T PALB2 Splice_Site p.X1067_splice 0.17 TCGA-34-2604-01 16 2578307 2578307 T C AMDHD2 Missense_Mutation p.F263S 0.34 tolerated(0.07) probably_damaging(0.986) TCGA-34-2604-01 16 30779653 30779653 C A RNF40 Missense_Mutation p.P594H 0.19 tolerated(0.09) benign(0.078) TCGA-34-2604-01 16 421970 421970 C A TMEM8A 3'UTR 0.15 TCGA-34-2604-01 16 4415053 4415053 C A CORO7 Missense_Mutation p.R283S 0.41 tolerated(0.47) benign(0.004) TCGA-34-2604-01 16 50250095 50250095 G T PAPD5 Missense_Mutation p.D292Y 0.22 deleterious(0) possibly_damaging(0.908) TCGA-34-2604-01 16 50827522 50827522 C T CYLD Missense_Mutation p.P806S 0.24 tolerated(0.48) benign(0.004) TCGA-34-2604-01 16 67943535 67943535 A G PSKH1 Missense_Mutation p.M295V 0.27 tolerated(0.13) probably_damaging(0.949) TCGA-34-2604-01 16 71482577 71482577 T C ZNF23 Missense_Mutation p.N451D 0.21 tolerated(0.27) benign(0.021) TCGA-34-2604-01 16 72992406 72992406 T A ZFHX3 Missense_Mutation p.T547S 0.10 benign(0.164) TCGA-34-2604-01 16 814995 814995 C A MSLN Missense_Mutation p.P157T 0.17 tolerated(0.49) benign(0.438) TCGA-34-2604-01 16 8990938 8990938 C T USP7 Missense_Mutation p.D913N 0.19 tolerated(1) benign(0) TCGA-34-2604-01 17 10322108 10322108 C T MYH8 Missense_Mutation p.G122D 0.23 deleterious(0) probably_damaging(0.987) TCGA-34-2604-01 17 10354159 10354159 G C MYH4 Missense_Mutation p.R1307G 0.24 deleterious(0) probably_damaging(0.916) TCGA-34-2604-01 17 11631213 11631213 G T DNAH9 Nonsense_Mutation p.E1930* 0.18 TCGA-34-2604-01 17 18023319 18023319 C T MYO15A Missense_Mutation p.P402L 0.12 benign(0) TCGA-34-2604-01 17 19250440 19250440 G A B9D1 Intron 0.32 TCGA-34-2604-01 17 21731558 21731558 C A UBBP4 Nonsense_Mutation p.Y211* 0.23 TCGA-34-2604-01 17 2323771 2323771 T A METTL16 Missense_Mutation p.E394D 0.25 deleterious(0.01) probably_damaging(0.996) TCGA-34-2604-01 17 3119825 3119825 A T OR1A1 Missense_Mutation p.N304I 0.19 tolerated(0.22) benign(0.001) TCGA-34-2604-01 17 3324353 3324353 C T OR3A3 Silent p.N164N 0.24 TCGA-34-2604-01 17 34072930 34072930 G T GAS2L2 Missense_Mutation p.T529K 0.28 tolerated(0.23) benign(0.026) TCGA-34-2604-01 17 34199314 34199314 C A CCL5 3'UTR 0.28 TCGA-34-2604-01 17 34391670 34391670 T A CCL18 5'UTR 0.21 TCGA-34-2604-01 17 36288223 36288223 C A TBC1D3F Silent p.P103P 0.04 TCGA-34-2604-01 17 36288224 36288224 A T TBC1D3F Missense_Mutation p.M104L 0.04 tolerated(0.98) benign(0.02) TCGA-34-2604-01 17 37809817 37809817 C A STARD3 Missense_Mutation p.D11E 0.14 tolerated_low_confidence(0.14) benign(0.156) TCGA-34-2604-01 17 3936142 3936142 C T ZZEF1 Missense_Mutation p.V2247M 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-34-2604-01 17 39412237 39412237 A C KRTAP9-9 3'UTR 0.23 TCGA-34-2604-01 17 40835846 40835846 C T CNTNAP1 Silent p.C25C 0.07 TCGA-34-2604-01 17 42018888 42018888 C T PPY Silent p.Q45Q 0.40 TCGA-34-2604-01 17 42462436 42462436 C A ITGA2B Missense_Mutation p.A227S 0.43 tolerated(0.43) benign(0.044) TCGA-34-2604-01 17 47296928 47296928 A T ABI3 Silent p.T163T 0.25 TCGA-34-2604-01 17 48683384 48683384 G A CACNA1G Silent p.Q1474Q 0.33 TCGA-34-2604-01 17 51901334 51901334 G A KIF2B Missense_Mutation p.G314S 0.09 deleterious(0.01) probably_damaging(1) TCGA-34-2604-01 17 556542 556542 C A VPS53 Missense_Mutation p.Q199H 0.31 deleterious(0.05) possibly_damaging(0.799) TCGA-34-2604-01 17 56386266 56386266 T A BZRAP1 Missense_Mutation p.E1456V 0.31 tolerated(0.07) probably_damaging(0.999) TCGA-34-2604-01 17 59557607 59557607 G A TBX4 Silent p.P316P 0.13 TCGA-34-2604-01 17 63133652 63133652 G T RGS9 5'UTR 0.19 TCGA-34-2604-01 17 67014553 67014553 C A ABCA9 Splice_Site p.X923_splice 0.36 TCGA-34-2604-01 17 67148244 67148244 T A ABCA10 Missense_Mutation p.Q1446L 0.40 deleterious(0.03) benign(0.077) TCGA-34-2604-01 17 73008907 73008907 C G ICT1 Missense_Mutation p.I42M 0.41 tolerated(0.09) possibly_damaging(0.472) TCGA-34-2604-01 17 7579374 7579374 C A TP53 Missense_Mutation p.G105C 0.23 deleterious(0) probably_damaging(1) TCGA-34-2604-01 17 7948281 7948281 G T ALOX15B Missense_Mutation p.V271L 0.24 tolerated(0.36) benign(0.042) TCGA-34-2604-01 18 10696420 10696420 G A PIEZO2 Silent p.I2202I 0.30 TCGA-34-2604-01 18 12264404 12264404 A T CIDEA Silent p.G94G 0.21 TCGA-34-2604-01 18 20548849 20548849 G T RBBP8 Missense_Mutation p.R110L 0.14 deleterious(0) benign(0.44) TCGA-34-2604-01 18 21053535 21053535 A T RIOK3 Missense_Mutation p.N320Y 0.14 deleterious(0) probably_damaging(0.996) TCGA-34-2604-01 18 21140377 21140377 C A NPC1 Missense_Mutation p.E233D 0.12 tolerated(0.74) benign(0) TCGA-34-2604-01 18 225376 225376 T C THOC1 Silent p.Q349Q 0.11 TCGA-34-2604-01 18 2891253 2891253 G C EMILIN2 Silent p.L376L 0.08 TCGA-34-2604-01 18 46570404 46570404 G A DYM 3'UTR 0.08 TCGA-34-2604-01 18 46783396 46783396 C A DYM Missense_Mutation p.A482S 0.14 tolerated(0.36) possibly_damaging(0.778) TCGA-34-2604-01 18 5433546 5433546 C G EPB41L3 Silent p.T278T 0.05 TCGA-34-2604-01 18 54339797 54339797 G T WDR7 Silent p.A17A 0.09 TCGA-34-2604-01 18 56010254 56010254 C T NEDD4L Silent p.F498F 0.11 TCGA-34-2604-01 18 56587135 56587135 A T ZNF532 Missense_Mutation p.E539V 0.08 tolerated(0.06) possibly_damaging(0.898) TCGA-34-2604-01 18 5891810 5891810 C A TMEM200C Missense_Mutation p.G85W 0.13 deleterious(0) probably_damaging(0.977) TCGA-34-2604-01 18 60645699 60645699 G T PHLPP1 Missense_Mutation p.A1397S 0.17 deleterious(0.02) possibly_damaging(0.732) TCGA-34-2604-01 18 61654536 61654536 C T SERPINB8 3'UTR 0.15 TCGA-34-2604-01 18 64218475 64218475 T C CDH19 Missense_Mutation p.K211E 0.13 tolerated(0.11) benign(0.023) TCGA-34-2604-01 18 66564546 66564546 A C CCDC102B Silent p.R382R 0.07 TCGA-34-2604-01 18 7231330 7231330 A T LRRC30 Missense_Mutation p.D65V 0.10 tolerated(0.12) possibly_damaging(0.884) TCGA-34-2604-01 18 77798536 77798536 G T RBFA Missense_Mutation p.R137L 0.14 deleterious(0) probably_damaging(1) TCGA-34-2604-01 19 10220892 10220892 G T PPAN Silent p.R264R 0.33 TCGA-34-2604-01 19 14884771 14884771 T A EMR2 Missense_Mutation p.T60S 0.18 tolerated(1) benign(0) TCGA-34-2604-01 19 15281165 15281165 C A NOTCH3 Silent p.V1697V 0.20 TCGA-34-2604-01 19 16552785 16552785 G A EPS15L1 Missense_Mutation p.P28L 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-34-2604-01 19 1785175 1785175 G A ATP8B3 Missense_Mutation p.T1172M 0.25 deleterious(0.01) benign(0.411) TCGA-34-2604-01 19 19338362 19338362 C A NCAN Missense_Mutation p.P645T 0.29 deleterious(0.04) benign(0.039) TCGA-34-2604-01 19 22574400 22574400 T C ZNF98 Missense_Mutation p.Y546C 0.18 deleterious(0.01) benign(0.151) TCGA-34-2604-01 19 24310854 24310854 A T ZNF254 3'UTR 0.24 TCGA-34-2604-01 19 30936355 30936355 A T ZNF536 Missense_Mutation p.K629M 0.14 deleterious(0) probably_damaging(0.998) TCGA-34-2604-01 19 35842784 35842784 C - FFAR1 Frame_Shift_Del p.L112Wfs*103 0.32 TCGA-34-2604-01 19 35842981 35842981 C T FFAR1 Missense_Mutation p.P176L 0.16 deleterious(0.01) possibly_damaging(0.526) TCGA-34-2604-01 19 36334447 36334447 C A NPHS1 Missense_Mutation p.G754V 0.18 deleterious(0) probably_damaging(0.998) TCGA-34-2604-01 19 36334448 36334448 C A NPHS1 Missense_Mutation p.G754W 0.18 deleterious(0) probably_damaging(0.967) TCGA-34-2604-01 19 38572903 38572903 G A SIPA1L3 Missense_Mutation p.R233Q 0.18 deleterious(0.02) benign(0.001) TCGA-34-2604-01 19 38976306 38976306 G T RYR1 Missense_Mutation p.A1671S 0.12 benign(0.013) TCGA-34-2604-01 19 45422574 45422574 A T APOC1 3'UTR 0.20 TCGA-34-2604-01 19 4552599 4552599 G T SEMA6B Missense_Mutation p.P275H 0.28 deleterious(0.03) probably_damaging(0.979) TCGA-34-2604-01 19 46032172 46032172 C A OPA3 3'UTR 0.11 TCGA-34-2604-01 19 46095065 46095065 C A GPR4 Silent p.P20P 0.18 TCGA-34-2604-01 19 47151821 47151821 A C DACT3 Missense_Mutation p.V603G 0.21 deleterious(0) possibly_damaging(0.504) TCGA-34-2604-01 19 50266396 50266396 G - TSKS Frame_Shift_Del p.R37Gfs*3 0.19 TCGA-34-2604-01 19 50760618 50760618 C T MYH14 Missense_Mutation p.P703S 0.15 tolerated(0.17) benign(0.007) TCGA-34-2604-01 19 50826805 50826805 C T KCNC3 Missense_Mutation p.A469T 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-34-2604-01 19 51465090 51465090 G T KLK6 Silent p.S164S 0.15 TCGA-34-2604-01 19 52327634 52327634 C G FPR3 Missense_Mutation p.S211R 0.19 tolerated(0.06) possibly_damaging(0.897) TCGA-34-2604-01 19 53209725 53209725 T C ZNF611 Missense_Mutation p.R195G 0.22 tolerated(0.06) benign(0.079) TCGA-34-2604-01 19 54445425 54445425 G C CACNG7 Missense_Mutation p.A236P 0.21 deleterious(0.01) benign(0.302) TCGA-34-2604-01 19 54759905 54759905 C A LILRB5 Splice_Site p.X219_splice 0.17 TCGA-34-2604-01 19 55399594 55399594 C T FCAR Silent p.Y194Y 0.16 TCGA-34-2604-01 19 56545043 56545043 A T NLRP5 Missense_Mutation p.L861F 0.17 deleterious(0.02) probably_damaging(0.972) TCGA-34-2604-01 19 57326424 57326424 T C PEG3 Missense_Mutation p.H1129R 0.17 tolerated(0.07) possibly_damaging(0.898) TCGA-34-2604-01 19 57640579 57640579 C A USP29 Missense_Mutation p.T179K 0.19 deleterious(0.02) benign(0.01) TCGA-34-2604-01 19 58153199 58153199 G T ZNF211 Missense_Mutation p.G514W 0.14 deleterious(0) probably_damaging(1) TCGA-34-2604-01 19 58213777 58213777 C G ZNF154 Missense_Mutation p.W180C 0.19 deleterious(0.04) probably_damaging(0.943) TCGA-34-2604-01 19 58500002 58500002 C T ZNF606 Missense_Mutation p.D89N 0.17 tolerated(0.13) probably_damaging(0.997) TCGA-34-2604-01 19 5867616 5867616 C G FUT5 Missense_Mutation p.A41P 0.25 tolerated(1) benign(0.001) TCGA-34-2604-01 19 8808027 8808027 C T ACTL9 Missense_Mutation p.G342D 0.17 deleterious(0) probably_damaging(1) TCGA-34-2604-01 19 9060731 9060731 C G MUC16 Silent p.V8905V 0.22 TCGA-34-2604-01 19 9063710 9063710 T A MUC16 Missense_Mutation p.L7912F 0.27 unknown(0) TCGA-34-2604-01 19 9073773 9073773 C T MUC16 Missense_Mutation p.S4558N 0.21 unknown(0) TCGA-34-2604-01 19 9076862 9076862 C A MUC16 Silent p.L3528L 0.23 TCGA-34-2604-01 1 103573638 103573638 C A COL11A1 Missense_Mutation p.V33F 0.13 benign(0.251) TCGA-34-2604-01 1 110162772 110162772 G A AMPD2 5'Flank 0.12 TCGA-34-2604-01 1 110734762 110734762 G T SLC6A17 Missense_Mutation p.V345L 0.25 tolerated(0.09) benign(0.107) TCGA-34-2604-01 1 111863019 111863019 C A CHIA Silent p.V454V 0.23 TCGA-34-2604-01 1 11187809 11187809 C T MTOR Missense_Mutation p.G2030S 0.12 deleterious(0.02) probably_damaging(0.994) TCGA-34-2604-01 1 112309423 112309423 C A DDX20 Missense_Mutation p.H793N 0.12 tolerated(0.2) benign(0.021) TCGA-34-2604-01 1 115537562 115537562 G A SYCP1 Missense_Mutation p.M951I 0.12 tolerated(0.08) benign(0.003) TCGA-34-2604-01 1 115615628 115615628 G T TSPAN2 Missense_Mutation p.L24M 0.10 deleterious(0) probably_damaging(0.999) TCGA-34-2604-01 1 117617772 117617772 C G TTF2 Missense_Mutation p.S189C 0.12 deleterious(0.01) possibly_damaging(0.606) TCGA-34-2604-01 1 118550756 118550756 T C SPAG17 Missense_Mutation p.T1500A 0.17 deleterious(0) probably_damaging(0.988) TCGA-34-2604-01 1 118634552 118634552 C A SPAG17 Splice_Site p.X416_splice 0.17 TCGA-34-2604-01 1 145586523 145586523 C A PIAS3 3'UTR 0.33 TCGA-34-2604-01 1 146639395 146639395 T A PRKAB2 Missense_Mutation p.I92F 0.10 deleterious(0) probably_damaging(0.991) TCGA-34-2604-01 1 151506505 151506505 C G CGN Missense_Mutation p.R933G 0.10 tolerated(0.31) benign(0.094) TCGA-34-2604-01 1 151773747 151773747 G T LINGO4 Missense_Mutation p.D478E 0.22 deleterious(0) probably_damaging(0.987) TCGA-34-2604-01 1 151773748 151773748 T G LINGO4 Missense_Mutation p.D478A 0.22 deleterious(0) probably_damaging(0.996) TCGA-34-2604-01 1 156215018 156215018 A C PAQR6 Missense_Mutation p.L69R 0.26 tolerated_low_confidence(0.09) possibly_damaging(0.655) TCGA-34-2604-01 1 156264226 156264226 C G C1orf85 Missense_Mutation p.S170T 0.19 tolerated(0.53) benign(0.012) TCGA-34-2604-01 1 1563439 1563439 C T MIB2 Missense_Mutation p.A689V 0.17 tolerated(0.1) benign(0.053) TCGA-34-2604-01 1 156713580 156713580 C A HDGF Nonsense_Mutation p.E210* 0.25 TCGA-34-2604-01 1 157667114 157667114 T A FCRL3 Silent p.P220P 0.17 TCGA-34-2604-01 1 158227299 158227299 C A CD1A Silent p.R324R 0.13 TCGA-34-2604-01 1 158621258 158621258 C A SPTA1 Missense_Mutation p.D1126Y 0.24 deleterious(0) probably_damaging(1) TCGA-34-2604-01 1 159557626 159557626 A G APCS 5'UTR 0.08 TCGA-34-2604-01 1 160054311 160054311 C A KCNJ9 Missense_Mutation p.P164H 0.11 deleterious(0) probably_damaging(1) TCGA-34-2604-01 1 161654969 161654969 T C RPL31P11 RNA 0.20 TCGA-34-2604-01 1 16534565 16534565 C A ARHGEF19 Missense_Mutation p.G190C 0.16 deleterious_low_confidence(0) possibly_damaging(0.681) TCGA-34-2604-01 1 165397971 165397971 G T RXRG Silent p.A94A 0.12 TCGA-34-2604-01 1 170521515 170521515 A T GORAB Missense_Mutation p.Q366L 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.576) TCGA-34-2604-01 1 172633478 172633478 C T FASLG Silent p.H133H 0.12 TCGA-34-2604-01 1 173499194 173499194 C A SLC9C2 Splice_Site p.X722_splice 0.10 TCGA-34-2604-01 1 173921147 173921147 C T RC3H1 Missense_Mutation p.A834T 0.09 tolerated(0.06) benign(0.069) TCGA-34-2604-01 1 175066700 175066700 G T TNN Missense_Mutation p.G579V 0.20 tolerated(0.07) benign(0.082) TCGA-34-2604-01 1 175066701 175066701 G T TNN Silent p.G579G 0.20 TCGA-34-2604-01 1 175105030 175105030 G T TNN Missense_Mutation p.R1127M 0.22 deleterious(0) probably_damaging(0.992) TCGA-34-2604-01 1 175332954 175332954 G C TNR Missense_Mutation p.P866R 0.06 tolerated(0.07) possibly_damaging(0.906) TCGA-34-2604-01 1 17570694 17570694 C T PADI1 Missense_Mutation p.R650C 0.11 deleterious(0.02) probably_damaging(0.976) TCGA-34-2604-01 1 176838082 176838082 T A ASTN1 Missense_Mutation p.D1182V 0.11 deleterious(0) possibly_damaging(0.67) TCGA-34-2604-01 1 178490175 178490175 C A TEX35 Intron 0.36 TCGA-34-2604-01 1 185106858 185106858 C G TRMT1L Missense_Mutation p.V465L 0.08 tolerated(0.11) benign(0.285) TCGA-34-2604-01 1 186113695 186113695 G T HMCN1 Missense_Mutation p.W4709L 0.20 probably_damaging(0.954) TCGA-34-2604-01 1 193218898 193218898 G T CDC73 Missense_Mutation p.D486Y 0.10 deleterious(0) probably_damaging(0.998) TCGA-34-2604-01 1 19593931 19593931 G T AKR7L Missense_Mutation p.L109M 0.09 probably_damaging(0.986) TCGA-34-2604-01 1 196920156 196920156 C A CFHR2 Missense_Mutation p.T143N 0.11 tolerated(0.31) possibly_damaging(0.903) TCGA-34-2604-01 1 197169470 197169470 G A ZBTB41 Missense_Mutation p.P45L 0.14 deleterious_low_confidence(0.03) benign(0.009) TCGA-34-2604-01 1 201008939 201008939 A C CACNA1S 3'UTR 0.14 TCGA-34-2604-01 1 204518246 204518246 G T MDM4 Missense_Mutation p.E303D 0.12 tolerated(0.1) possibly_damaging(0.665) TCGA-34-2604-01 1 20469943 20469943 G A PLA2G2F Silent p.L58L 0.24 TCGA-34-2604-01 1 205819110 205819110 C T PM20D1 Missense_Mutation p.G31R 0.10 tolerated(0.54) benign(0) TCGA-34-2604-01 1 207110486 207110486 C A PIGR Silent p.L333L 0.11 TCGA-34-2604-01 1 207314499 207314499 G A C4BPA Missense_Mutation p.S441N 0.13 tolerated(0.46) benign(0.126) TCGA-34-2604-01 1 207758189 207758189 C T CR1 Missense_Mutation p.P1833L 0.17 deleterious(0.01) possibly_damaging(0.636) TCGA-34-2604-01 1 208269445 208269445 C T PLXNA2 Silent p.L637L 0.21 TCGA-34-2604-01 1 20944998 20944998 C G CDA Silent p.V126V 0.16 TCGA-34-2604-01 1 209963110 209963110 C A IRF6 Nonsense_Mutation p.G361* 0.12 TCGA-34-2604-01 1 210329204 210329204 G T SYT14 Nonsense_Mutation p.E480* 0.21 TCGA-34-2604-01 1 211542793 211542793 G A TRAF5 Splice_Site p.X264_splice 0.11 TCGA-34-2604-01 1 215933105 215933105 C A USH2A Missense_Mutation p.G3710C 0.19 probably_damaging(1) TCGA-34-2604-01 1 215933178 215933178 C T USH2A Nonsense_Mutation p.W3685* 0.19 TCGA-34-2604-01 1 216144031 216144031 G A USH2A Missense_Mutation p.P2298L 0.21 benign(0.417) TCGA-34-2604-01 1 216741441 216741441 C T ESRRG Splice_Site p.X202_splice 0.13 TCGA-34-2604-01 1 220870077 220870077 G C C1orf115 3'UTR 0.17 TCGA-34-2604-01 1 222717300 222717300 G A HHIPL2 Silent p.L185L 0.17 TCGA-34-2604-01 1 233515292 233515292 G T MLK4 Missense_Mutation p.R847L 0.09 tolerated(0.58) benign(0.003) TCGA-34-2604-01 1 235292091 235292091 C A TOMM20 5'UTR 0.13 TCGA-34-2604-01 1 236205358 236205358 G A NID1 Silent p.P329P 0.22 TCGA-34-2604-01 1 237494240 237494240 G A RYR2 Silent p.A77A 0.15 TCGA-34-2604-01 1 237777804 237777804 A G RYR2 Missense_Mutation p.I1792M 0.24 benign(0.017) TCGA-34-2604-01 1 240255863 240255863 G T FMN2 Missense_Mutation p.A152S 0.15 unknown(0) TCGA-34-2604-01 1 240975325 240975325 C T RGS7 Silent p.Q325Q 0.21 TCGA-34-2604-01 1 241728352 241728352 T A KMO Silent p.P227P 0.08 TCGA-34-2604-01 1 241729817 241729817 C A KMO Missense_Mutation p.F238L 0.19 deleterious(0) probably_damaging(0.993) TCGA-34-2604-01 1 241798991 241798991 T C CHML Silent p.A26A 0.12 TCGA-34-2604-01 1 243303249 243303249 C A CEP170 Missense_Mutation p.S1407I 0.12 deleterious(0) probably_damaging(0.943) TCGA-34-2604-01 1 247737501 247737501 C T GCSAML Silent p.I75I 0.18 TCGA-34-2604-01 1 247875491 247875491 G T OR6F1 Nonsense_Mutation p.C189* 0.08 TCGA-34-2604-01 1 248059006 248059008 GTA CT OR2W3 Frame_Shift_Del p.V40Lfs*95 0.17 TCGA-34-2604-01 1 248128927 248128927 C A OR2AK2 Silent p.V98V 0.22 TCGA-34-2604-01 1 248201816 248201816 G A OR2L2 Missense_Mutation p.D83N 0.21 tolerated(1) benign(0.002) TCGA-34-2604-01 1 248202161 248202161 G T OR2L2 Missense_Mutation p.V198L 0.20 tolerated(0.23) benign(0.162) TCGA-34-2604-01 1 248512970 248512970 C A OR14C36 Silent p.A298A 0.17 TCGA-34-2604-01 1 248525143 248525143 C A OR2T4 Silent p.L87L 0.06 TCGA-34-2604-01 1 248737697 248737697 G T OR2T34 Missense_Mutation p.A121D 0.27 deleterious(0) benign(0.08) TCGA-34-2604-01 1 25166473 25166473 G T CLIC4 Missense_Mutation p.D180Y 0.14 deleterious(0) probably_damaging(0.962) TCGA-34-2604-01 1 26370803 26370803 C A SLC30A2 Missense_Mutation p.G135V 0.17 deleterious(0) probably_damaging(1) TCGA-34-2604-01 1 32050544 32050544 C A TINAGL1 Nonsense_Mutation p.S255* 0.21 TCGA-34-2604-01 1 32672177 32672177 A T IQCC Missense_Mutation p.N165I 0.09 deleterious(0.01) benign(0.03) TCGA-34-2604-01 1 38330069 38330069 G A INPP5B Silent p.H847H 0.05 TCGA-34-2604-01 1 49208331 49208331 C A BEND5 Silent p.A286A 0.08 TCGA-34-2604-01 1 57395201 57395201 C T C8B Nonsense_Mutation p.W551* 0.08 TCGA-34-2604-01 1 59248699 59248699 T A JUN Missense_Mutation p.N15I 0.18 tolerated(0.28) possibly_damaging(0.588) TCGA-34-2604-01 1 67155979 67155979 C A SGIP1 Missense_Mutation p.A517E 0.13 deleterious(0) probably_damaging(0.968) TCGA-34-2604-01 1 70482209 70482209 G A LRRC7 Missense_Mutation p.D400N 0.12 deleterious(0.01) probably_damaging(0.989) TCGA-34-2604-01 1 70639304 70639304 C A LRRC40 Splice_Site p.X355_splice 0.09 TCGA-34-2604-01 1 76356447 76356447 A T MSH4 Missense_Mutation p.T765S 0.19 deleterious(0.01) probably_damaging(1) TCGA-34-2604-01 1 79107270 79107270 G T IFI44L Nonsense_Mutation p.E434* 0.09 TCGA-34-2604-01 1 85595728 85595728 A T WDR63 Missense_Mutation p.E822V 0.24 tolerated(0.11) benign(0.027) TCGA-34-2604-01 1 92737154 92737154 C A GLMN Missense_Mutation p.R264M 0.14 tolerated(0.11) benign(0.383) TCGA-34-2604-01 20 13098352 13098352 G T SPTLC3 Missense_Mutation p.G378C 0.11 deleterious(0) probably_damaging(1) TCGA-34-2604-01 20 20071504 20071504 G T C20orf26 Missense_Mutation p.D195Y 0.17 deleterious(0) probably_damaging(0.959) TCGA-34-2604-01 20 20269515 20269515 C A C20orf26 Missense_Mutation p.P1020H 0.18 deleterious(0.01) probably_damaging(0.975) TCGA-34-2604-01 20 25057096 25057096 C G VSX1 Missense_Mutation p.G300A 0.19 tolerated(0.23) benign(0.306) TCGA-34-2604-01 20 30038037 30038037 C A DEFB123 3'UTR 0.16 TCGA-34-2604-01 20 30784974 30784974 C A PLAGL2 Missense_Mutation p.G258C 0.21 deleterious(0.01) possibly_damaging(0.766) TCGA-34-2604-01 20 31021327 31021327 G C ASXL1 Silent p.V442V 0.19 TCGA-34-2604-01 20 3653197 3653197 C T ADAM33 Missense_Mutation p.C463Y 0.12 deleterious(0) probably_damaging(0.992) TCGA-34-2604-01 20 36625176 36625176 G T TTI1 Silent p.G991G 0.10 TCGA-34-2604-01 20 39985818 39985818 A T LPIN3 Missense_Mutation p.T648S 0.13 deleterious(0) probably_damaging(0.992) TCGA-34-2604-01 20 40081416 40081416 T G CHD6 Missense_Mutation p.E1096A 0.17 deleterious(0.01) probably_damaging(0.993) TCGA-34-2604-01 20 42815298 42815298 C G JPH2 Silent p.G16G 0.10 TCGA-34-2604-01 20 43138575 43138575 C G SERINC3 Missense_Mutation p.W190C 0.18 deleterious(0.01) benign(0.35) TCGA-34-2604-01 20 43994314 43994314 A T SYS1 Missense_Mutation p.N73I 0.16 deleterious(0) probably_damaging(0.973) TCGA-34-2604-01 20 4768871 4768871 G T RASSF2 Missense_Mutation p.T228K 0.16 tolerated(0.05) probably_damaging(0.977) TCGA-34-2604-01 20 47865584 47865584 A T ZNFX1 Missense_Mutation p.I1326N 0.18 deleterious(0) benign(0.248) TCGA-34-2604-01 20 50408012 50408012 T G SALL4 Missense_Mutation p.Q337P 0.19 deleterious(0.02) benign(0.004) TCGA-34-2604-01 20 5295008 5295008 G T PROKR2 Missense_Mutation p.A3D 0.12 tolerated_low_confidence(0.2) benign(0.001) TCGA-34-2604-01 20 62192551 62192551 C G HELZ2 Missense_Mutation p.A2344P 0.26 deleterious(0) probably_damaging(0.979) TCGA-34-2604-01 20 865797 865797 G C ANGPT4 Missense_Mutation p.D253E 0.13 tolerated(0.07) benign(0.001) TCGA-34-2604-01 21 19687508 19687508 C A TMPRSS15 Missense_Mutation p.D663Y 0.20 deleterious(0) probably_damaging(0.996) TCGA-34-2604-01 21 22658588 22658588 G C NCAM2 Splice_Site p.X113_splice 0.24 TCGA-34-2604-01 21 32253491 32253491 G T KRTAP11-1 Missense_Mutation p.S118Y 0.25 deleterious(0) probably_damaging(0.947) TCGA-34-2604-01 21 43187071 43187071 C G RIPK4 Missense_Mutation p.W44S 0.17 deleterious(0) probably_damaging(0.996) TCGA-34-2604-01 21 43411870 43411870 C A ZBTB21 Nonsense_Mutation p.E779* 0.23 TCGA-34-2604-01 21 46047329 46047329 C A KRTAP10-9 Missense_Mutation p.Q81K 0.20 deleterious(0.03) unknown(0) TCGA-34-2604-01 21 46624591 46624591 C T ADARB1 Missense_Mutation p.R603W 0.18 deleterious(0) probably_damaging(0.999) TCGA-34-2604-01 22 17119537 17119537 G T TPTEP1 RNA 0.08 TCGA-34-2604-01 22 17472770 17472770 T G GAB4 Missense_Mutation p.E157D 0.26 tolerated(0.25) possibly_damaging(0.483) TCGA-34-2604-01 22 18083948 18083948 C A ATP6V1E1 Splice_Site p.X93_splice 0.13 TCGA-34-2604-01 22 19967559 19967559 C A ARVCF Missense_Mutation p.R368L 0.18 deleterious(0.01) benign(0.038) TCGA-34-2604-01 22 21377802 21377802 G T P2RX6 Missense_Mutation p.G262V 0.12 deleterious(0) probably_damaging(0.996) TCGA-34-2604-01 22 22891006 22891006 T A PRAME Missense_Mutation p.D338V 0.13 deleterious(0) probably_damaging(0.999) TCGA-34-2604-01 22 32275526 32275526 C T DEPDC5 Missense_Mutation p.P1265L 0.15 deleterious(0) benign(0.005) TCGA-34-2604-01 22 32588981 32588981 C T RFPL2 Missense_Mutation p.R155Q 0.36 tolerated(0.29) benign(0.024) TCGA-34-2604-01 22 42321508 42321508 C A TNFRSF13C Missense_Mutation p.A140S 0.25 deleterious(0.01) benign(0.211) TCGA-34-2604-01 2 107041441 107041441 C T RGPD3 Silent p.K994K 0.12 TCGA-34-2604-01 2 112786167 112786167 G T MERTK Missense_Mutation p.R909L 0.17 tolerated(0.21) benign(0.039) TCGA-34-2604-01 2 128046270 128046270 C T ERCC3 Silent p.G331G 0.16 TCGA-34-2604-01 2 128331518 128331518 C T MYO7B Missense_Mutation p.R206C 0.16 deleterious(0) probably_damaging(0.943) TCGA-34-2604-01 2 128347753 128347753 C A MYO7B Nonsense_Mutation p.C647* 0.18 TCGA-34-2604-01 2 131103022 131103023 - T IMP4 Frame_Shift_Ins p.R91Sfs*30 0.18 TCGA-34-2604-01 2 131904471 131904471 G T PLEKHB2 3'UTR 0.14 TCGA-34-2604-01 2 135738900 135738900 G T MAP3K19 Missense_Mutation p.S1137R 0.13 deleterious(0) probably_damaging(0.993) TCGA-34-2604-01 2 135744028 135744028 G T MAP3K19 Nonsense_Mutation p.S805* 0.11 TCGA-34-2604-01 2 141359053 141359053 G T LRP1B Missense_Mutation p.H2319N 0.16 benign(0.107) TCGA-34-2604-01 2 141812693 141812693 G T LRP1B Nonsense_Mutation p.S515* 0.23 TCGA-34-2604-01 2 143787249 143787249 G T KYNU Splice_Site p.X319_splice 0.22 TCGA-34-2604-01 2 150061868 150061868 G C LYPD6B Missense_Mutation p.W60S 0.16 benign(0.386) TCGA-34-2604-01 2 1653428 1653428 C A PXDN Silent p.L708L 0.15 TCGA-34-2604-01 2 165578812 165578812 C A COBLL1 Missense_Mutation p.A257S 0.15 deleterious(0) probably_damaging(1) TCGA-34-2604-01 2 166179837 166179837 C A SCN2A Missense_Mutation p.H615N 0.19 tolerated(0.44) benign(0.001) TCGA-34-2604-01 2 166747107 166747107 C A TTC21B Missense_Mutation p.A1049S 0.10 deleterious(0.03) benign(0.065) TCGA-34-2604-01 2 167298073 167298073 A T SCN7A Missense_Mutation p.C664S 0.13 deleterious(0.02) probably_damaging(0.954) TCGA-34-2604-01 2 170062883 170062883 G T LRP2 Silent p.A2449A 0.15 TCGA-34-2604-01 2 174229530 174229530 G T CDCA7 Missense_Mutation p.R236M 0.11 deleterious(0) possibly_damaging(0.521) TCGA-34-2604-01 2 175618258 175618258 G T CHRNA1 Missense_Mutation p.L276M 0.11 deleterious(0) probably_damaging(0.945) TCGA-34-2604-01 2 179414497 179414497 G A TTN Missense_Mutation p.P30651L 0.19 TCGA-34-2604-01 2 179454776 179454776 T C TTN Missense_Mutation p.Q20559R 0.16 TCGA-34-2604-01 2 179583941 179583941 G A TTN Missense_Mutation p.A8059V 0.24 TCGA-34-2604-01 2 179598069 179598069 C T TTN Silent p.Q5317Q 0.23 TCGA-34-2604-01 2 179610353 179610353 A G TTN Intron 0.11 TCGA-34-2604-01 2 179615428 179615428 A G TTN Intron 0.18 TCGA-34-2604-01 2 179632744 179632744 T C TTN Missense_Mutation p.D3101G 0.24 TCGA-34-2604-01 2 185801048 185801048 C G ZNF804A Missense_Mutation p.P309A 0.16 deleterious(0.04) probably_damaging(0.991) TCGA-34-2604-01 2 185801722 185801722 C A ZNF804A Silent p.S533S 0.17 TCGA-34-2604-01 2 1914116 1914116 G A MYT1L Silent p.L569L 0.31 TCGA-34-2604-01 2 196726545 196726545 T A DNAH7 Missense_Mutation p.L2544F 0.15 deleterious(0) probably_damaging(0.993) TCGA-34-2604-01 2 196892687 196892687 G C DNAH7 Missense_Mutation p.I161M 0.19 tolerated(0.16) benign(0.065) TCGA-34-2604-01 2 202498083 202498083 C A TMEM237 Missense_Mutation p.A116S 0.18 tolerated(0.74) benign(0.039) TCGA-34-2604-01 2 202568916 202568916 G A ALS2 Missense_Mutation p.H1622Y 0.17 tolerated(0.09) probably_damaging(0.943) TCGA-34-2604-01 2 204571378 204571378 G T CD28 5'UTR 0.18 TCGA-34-2604-01 2 210574811 210574811 A T MAP2 Missense_Mutation p.I1636F 0.18 tolerated(0.09) probably_damaging(0.92) TCGA-34-2604-01 2 211179749 211179749 G C MYL1 Missense_Mutation p.D6E 0.11 tolerated_low_confidence(0.16) unknown(0) TCGA-34-2604-01 2 212248298 212248298 T A ERBB4 3'UTR 0.14 TCGA-34-2604-01 2 21224866 21224866 T A APOB Silent p.I4476I 0.25 TCGA-34-2604-01 2 219922231 219922231 C A IHH Silent p.A167A 0.20 TCGA-34-2604-01 2 220405236 220405236 C A CHPF Missense_Mutation p.E399D 0.20 deleterious(0.01) possibly_damaging(0.566) TCGA-34-2604-01 2 223791856 223791856 G T ACSL3 Missense_Mutation p.G472C 0.09 tolerated(0.15) probably_damaging(1) TCGA-34-2604-01 2 227958913 227958913 C A COL4A4 Nonsense_Mutation p.G433* 0.20 TCGA-34-2604-01 2 238903409 238903409 G T UBE2F Missense_Mutation p.D58Y 0.10 deleterious(0) probably_damaging(1) TCGA-34-2604-01 2 242004853 242004853 C A SNED1 Missense_Mutation p.S951Y 0.14 deleterious(0.05) probably_damaging(0.925) TCGA-34-2604-01 2 26950989 26950989 C A KCNK3 Missense_Mutation p.F246L 0.43 deleterious(0.04) probably_damaging(0.936) TCGA-34-2604-01 2 27480183 27480183 T A SLC30A3 Missense_Mutation p.S206C 0.32 deleterious(0.02) possibly_damaging(0.819) TCGA-34-2604-01 2 37259832 37259832 C A HEATR5B Missense_Mutation p.V1101L 0.14 deleterious(0) probably_damaging(0.95) TCGA-34-2604-01 2 43937253 43937253 T G PLEKHH2 Missense_Mutation p.D697E 0.30 tolerated(0.3) benign(0.003) TCGA-34-2604-01 2 48873902 48873902 G T STON1-GTF2A1L Missense_Mutation p.L937F 0.10 tolerated(0.07) possibly_damaging(0.538) TCGA-34-2604-01 2 54864876 54864876 G T SPTBN1 Missense_Mutation p.S1265I 0.15 tolerated(0.18) benign(0.093) TCGA-34-2604-01 2 55749274 55749274 C T CCDC104 Missense_Mutation p.T51I 0.21 deleterious(0) possibly_damaging(0.524) TCGA-34-2604-01 2 65559140 65559140 C G SPRED2 Missense_Mutation p.G140A 0.09 tolerated(0.22) possibly_damaging(0.804) TCGA-34-2604-01 2 69098281 69098281 G A BMP10 Silent p.D70D 0.13 TCGA-34-2604-01 2 70187913 70187913 C A ASPRV1 Missense_Mutation p.C303F 0.24 deleterious(0.02) probably_damaging(0.99) TCGA-34-2604-01 2 71906276 71906276 C T DYSF Missense_Mutation p.P1992S 0.08 tolerated(0.41) benign(0.006) TCGA-34-2604-01 2 74902653 74902653 G T SEMA4F Missense_Mutation p.E458D 0.20 tolerated(1) benign(0.019) TCGA-34-2604-01 2 86701997 86701997 A C KDM3A Missense_Mutation p.K608T 0.27 tolerated(0.39) benign(0.384) TCGA-34-2604-01 2 88407927 88407927 G A SMYD1 Missense_Mutation p.A395T 0.26 deleterious(0.02) probably_damaging(0.993) TCGA-34-2604-01 2 8999014 8999014 T G MBOAT2 Missense_Mutation p.H453P 0.12 deleterious(0) probably_damaging(0.999) TCGA-34-2604-01 2 8999015 8999015 G T MBOAT2 Missense_Mutation p.H453N 0.12 deleterious(0) probably_damaging(0.999) TCGA-34-2604-01 2 90229119 90229119 G T IGKV1D-42 Missense_Mutation p.G19C 0.12 deleterious(0.01) probably_damaging(0.992) TCGA-34-2604-01 2 95537378 95537378 C A TEKT4 Silent p.A18A 0.17 TCGA-34-2604-01 2 95952304 95952304 C T PROM2 Silent p.P675P 0.11 TCGA-34-2604-01 3 108380773 108380773 G T DZIP3 Missense_Mutation p.R750M 0.13 deleterious(0) benign(0.398) TCGA-34-2604-01 3 111316996 111316996 A C CD96 Silent p.V295V 0.07 TCGA-34-2604-01 3 111317005 111317005 A T CD96 Missense_Mutation p.K298N 0.08 tolerated(0.12) benign(0.085) TCGA-34-2604-01 3 113375944 113375944 G T KIAA2018 Missense_Mutation p.Q1529K 0.15 benign(0.118) TCGA-34-2604-01 3 113849964 113849964 C T DRD3 Splice_Site p.X336_splice 0.18 TCGA-34-2604-01 3 119466712 119466712 G T MAATS1 Silent p.L702L 0.18 TCGA-34-2604-01 3 119582370 119582370 G A GSK3B Missense_Mutation p.P344L 0.23 deleterious(0) probably_damaging(0.994) TCGA-34-2604-01 3 119582425 119582425 C G GSK3B Missense_Mutation p.A326P 0.27 deleterious(0) probably_damaging(0.992) TCGA-34-2604-01 3 120428628 120428628 A T RABL3 Missense_Mutation p.N89K 0.17 tolerated(0.09) possibly_damaging(0.532) TCGA-34-2604-01 3 122102021 122102021 C T CCDC58 Silent p.Q17Q 0.21 TCGA-34-2604-01 3 123166523 123166523 G A ADCY5 Silent p.R290R 0.25 TCGA-34-2604-01 3 129277393 129277393 T G PLXND1 Missense_Mutation p.I1775L 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-34-2604-01 3 132172224 132172224 G C DNAJC13 Missense_Mutation p.R207P 0.16 tolerated(0.39) benign(0.001) TCGA-34-2604-01 3 133167476 133167476 G T BFSP2 Missense_Mutation p.R239I 0.24 deleterious(0) possibly_damaging(0.707) TCGA-34-2604-01 3 145924506 145924506 C A PLSCR4 Missense_Mutation p.G54V 0.17 tolerated(0.05) possibly_damaging(0.512) TCGA-34-2604-01 3 146318137 146318137 G A PLSCR5 Missense_Mutation p.P43S 0.07 deleterious(0.04) benign(0.002) TCGA-34-2604-01 3 147131328 147131328 G A ZIC1 Nonsense_Mutation p.W445* 0.21 TCGA-34-2604-01 3 150911501 150911501 G T MED12L Intron 0.34 TCGA-34-2604-01 3 154147332 154147332 G C GPR149 Missense_Mutation p.L25V 0.31 tolerated(0.35) benign(0.156) TCGA-34-2604-01 3 154832821 154832821 C A MME Missense_Mutation p.P79T 0.39 deleterious(0) probably_damaging(0.996) TCGA-34-2604-01 3 154832946 154832946 T C MME Splice_Site p.X120_splice 0.38 TCGA-34-2604-01 3 157188147 157188147 G C VEPH1 Missense_Mutation p.P104A 0.12 deleterious(0) probably_damaging(1) TCGA-34-2604-01 3 158315992 158315992 G - MLF1 Frame_Shift_Del p.G166Efs*3 0.14 TCGA-34-2604-01 3 164727159 164727159 G T SI Missense_Mutation p.P1363T 0.07 deleterious(0) probably_damaging(0.998) TCGA-34-2604-01 3 170219076 170219076 G C SLC7A14 Silent p.T121T 0.12 TCGA-34-2604-01 3 173322231 173322231 G A NLGN1 5'UTR 0.11 TCGA-34-2604-01 3 175184901 175184901 G T NAALADL2 Missense_Mutation p.D488Y 0.14 deleterious(0.02) possibly_damaging(0.736) TCGA-34-2604-01 3 179519575 179519575 C G PEX5L 3'UTR 0.04 TCGA-34-2604-01 3 179593166 179593166 C G PEX5L Missense_Mutation p.R202T 0.34 deleterious_low_confidence(0.01) benign(0.277) TCGA-34-2604-01 3 184801170 184801170 A T C3orf70 Silent p.I126I 0.42 TCGA-34-2604-01 3 186383838 186383838 A G HRG Silent p.A6A 0.12 TCGA-34-2604-01 3 186572117 186572117 A G ADIPOQ Missense_Mutation p.E120G 0.03 deleterious(0.02) benign(0.148) TCGA-34-2604-01 3 186953583 186953583 G T MASP1 Nonsense_Mutation p.C692* 0.15 TCGA-34-2604-01 3 190993050 190993050 T A UTS2B Missense_Mutation p.S109C 0.08 deleterious(0.01) possibly_damaging(0.732) TCGA-34-2604-01 3 194336394 194336394 C T TMEM44 Silent p.K319K 0.13 TCGA-34-2604-01 3 195474150 195474150 C A MUC4 Missense_Mutation p.G5379V 0.12 benign(0) TCGA-34-2604-01 3 21467003 21467003 G C ZNF385D Missense_Mutation p.S278W 0.18 deleterious(0) probably_damaging(0.996) TCGA-34-2604-01 3 39374700 39374700 G A CCR8 Missense_Mutation p.C293Y 0.27 deleterious(0) probably_damaging(1) TCGA-34-2604-01 3 40231373 40231373 G A MYRIP Missense_Mutation p.A362T 0.05 tolerated(0.67) benign(0.003) TCGA-34-2604-01 3 425508 425508 G C CHL1 Missense_Mutation p.R729T 0.25 deleterious(0) benign(0.082) TCGA-34-2604-01 3 42916409 42916409 C A CYP8B1 Missense_Mutation p.K300N 0.15 deleterious(0.02) probably_damaging(1) TCGA-34-2604-01 3 43618755 43618755 T C ANO10 Splice_Site p.X198_splice 0.32 TCGA-34-2604-01 3 48601783 48601783 C A COL7A1 3'UTR 0.26 TCGA-34-2604-01 3 52506410 52506411 - CTC NISCH In_Frame_Ins p.V222_E223insS 0.19 TCGA-34-2604-01 3 7620579 7620579 G T GRM7 Missense_Mutation p.L662F 0.22 deleterious(0) probably_damaging(0.999) TCGA-34-2604-01 3 78655952 78655952 C A ROBO1 Missense_Mutation p.D1559Y 0.22 deleterious(0.05) possibly_damaging(0.621) TCGA-34-2604-01 3 9470611 9470611 G A SETD5 5'UTR 0.17 TCGA-34-2604-01 3 9517629 9517629 G C SETD5 Missense_Mutation p.G1395R 0.29 deleterious(0) possibly_damaging(0.884) TCGA-34-2604-01 3 97596567 97596567 G C CRYBG3 Missense_Mutation p.D229H 0.20 deleterious(0.01) possibly_damaging(0.647) TCGA-34-2604-01 4 104041454 104041454 T C CENPE Missense_Mutation p.K2394E 0.09 benign(0.012) TCGA-34-2604-01 4 106890102 106890102 A T NPNT Missense_Mutation p.L581F 0.19 deleterious(0) probably_damaging(0.999) TCGA-34-2604-01 4 122853504 122853504 G T TRPC3 Silent p.S303S 0.09 TCGA-34-2604-01 4 122853505 122853505 G T TRPC3 Missense_Mutation p.S303Y 0.09 deleterious(0.01) probably_damaging(0.933) TCGA-34-2604-01 4 126389860 126389860 C A FAT4 Silent p.A4031A 0.17 TCGA-34-2604-01 4 138452531 138452531 C G PCDH18 Missense_Mutation p.D238H 0.13 deleterious(0) probably_damaging(0.999) TCGA-34-2604-01 4 145040931 145040931 G T GYPA Missense_Mutation p.T47K 0.09 tolerated(1) benign(0.005) TCGA-34-2604-01 4 146823810 146823810 T A ZNF827 Missense_Mutation p.T201S 0.20 tolerated(0.74) benign(0.032) TCGA-34-2604-01 4 147754969 147754969 C A TTC29 Missense_Mutation p.K322N 0.11 deleterious(0.03) probably_damaging(0.948) TCGA-34-2604-01 4 149357216 149357216 C A NR3C2 Missense_Mutation p.S266I 0.11 deleterious_low_confidence(0) possibly_damaging(0.766) TCGA-34-2604-01 4 153573689 153573689 C A TMEM154 Splice_Site p.X122_splice 0.10 TCGA-34-2604-01 4 155254392 155254392 G T DCHS2 Missense_Mutation p.Q491K 0.16 tolerated(0.11) benign(0.055) TCGA-34-2604-01 4 156632270 156632270 C A GUCY1A3 Missense_Mutation p.P318H 0.09 tolerated(0.14) probably_damaging(0.95) TCGA-34-2604-01 4 156764859 156764859 C A ASIC5 Missense_Mutation p.A279S 0.13 deleterious(0.04) benign(0.281) TCGA-34-2604-01 4 156775445 156775445 G T ASIC5 Silent p.A123A 0.10 TCGA-34-2604-01 4 16014931 16014931 T A PROM1 Nonsense_Mutation p.R370* 0.21 TCGA-34-2604-01 4 162307162 162307162 T A FSTL5 Missense_Mutation p.S761C 0.13 deleterious(0.04) benign(0.293) TCGA-34-2604-01 4 165961590 165961590 C T TRIM60 Silent p.S122S 0.15 TCGA-34-2604-01 4 177067281 177067281 G C WDR17 Missense_Mutation p.E579D 0.12 tolerated(0.22) benign(0.37) TCGA-34-2604-01 4 177093525 177093525 G T WDR17 Splice_Site p.X1074_splice 0.12 TCGA-34-2604-01 4 177138110 177138110 C A ASB5 Missense_Mutation p.A241S 0.15 deleterious(0.05) possibly_damaging(0.732) TCGA-34-2604-01 4 185309884 185309884 C A IRF2 3'UTR 0.08 TCGA-34-2604-01 4 187524825 187524825 C A FAT1 Missense_Mutation p.G3619W 0.17 probably_damaging(1) TCGA-34-2604-01 4 22414971 22414971 G T GPR125 Missense_Mutation p.T689K 0.23 deleterious(0) probably_damaging(0.999) TCGA-34-2604-01 4 22749239 22749239 A G GBA3 Missense_Mutation p.R203G 0.22 deleterious(0.01) benign(0.149) TCGA-34-2604-01 4 24538883 24538883 C G DHX15 Intron 0.17 TCGA-34-2604-01 4 30725402 30725402 A G PCDH7 Silent p.G786G 0.22 TCGA-34-2604-01 4 4199364 4199364 C A OTOP1 Silent p.S399S 0.18 TCGA-34-2604-01 4 42400230 42400230 G A SHISA3 Missense_Mutation p.A53T 0.25 deleterious(0.01) possibly_damaging(0.881) TCGA-34-2604-01 4 42445680 42445680 T C ATP8A1 Missense_Mutation p.I1009V 0.18 tolerated(0.26) benign(0.001) TCGA-34-2604-01 4 47597840 47597840 G T CORIN Silent p.V1009V 0.10 TCGA-34-2604-01 4 49052710 49052710 G C CWH43 Splice_Site p.X622_splice 0.09 TCGA-34-2604-01 4 52861482 52861482 C A LRRC66 Missense_Mutation p.S569I 0.25 tolerated(0.34) benign(0) TCGA-34-2604-01 4 54364858 54364858 C A LNX1 Missense_Mutation p.G310W 0.14 deleterious(0) probably_damaging(1) TCGA-34-2604-01 4 56314943 56314943 T C CLOCK Intron 0.22 TCGA-34-2604-01 4 57190422 57190422 G T KIAA1211 Silent p.T1177T 0.09 TCGA-34-2604-01 4 57777613 57777613 A G REST Missense_Mutation p.H270R 0.10 deleterious(0) probably_damaging(0.999) TCGA-34-2604-01 4 66197513 66197513 C A EPHA5 Intron 0.23 TCGA-34-2604-01 4 69111392 69111392 G C TMPRSS11B 5'UTR 0.22 TCGA-34-2604-01 4 74274354 74274354 G A ALB Missense_Mutation p.R105H 0.07 tolerated(0.08) benign(0.022) TCGA-34-2604-01 4 77084445 77084445 G A SCARB2 Missense_Mutation p.A444V 0.10 deleterious(0.03) benign(0.297) TCGA-34-2604-01 4 79516535 79516535 G T ANXA3 Missense_Mutation p.G162C 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-34-2604-01 4 80247002 80247002 G T NAA11 Missense_Mutation p.D10E 0.11 deleterious(0) probably_damaging(0.993) TCGA-34-2604-01 4 88767348 88767348 T A MEPE Missense_Mutation p.L443H 0.10 tolerated(0.06) probably_damaging(0.962) TCGA-34-2604-01 4 89199677 89199677 C A PPM1K Missense_Mutation p.R20I 0.18 deleterious_low_confidence(0.04) benign(0.23) TCGA-34-2604-01 4 89571125 89571125 A T HERC3 Missense_Mutation p.T121S 0.11 tolerated(0.44) benign(0.111) TCGA-34-2604-01 4 96141252 96141252 A G UNC5C Missense_Mutation p.V395A 0.13 tolerated(0.1) benign(0.002) TCGA-34-2604-01 4 9784457 9784457 C A DRD5 Missense_Mutation p.H268Q 0.28 tolerated(0.13) benign(0.303) TCGA-34-2604-01 5 102343345 102343345 A C PAM Silent p.A733A 0.16 TCGA-34-2604-01 5 118970268 118970268 C A FAM170A Missense_Mutation p.S275R 0.26 tolerated(0.22) possibly_damaging(0.499) TCGA-34-2604-01 5 127514355 127514355 A C SLC12A2 Missense_Mutation p.D1025A 0.25 deleterious(0) probably_damaging(0.957) TCGA-34-2604-01 5 127712452 127712452 G T FBN2 Silent p.V648V 0.20 TCGA-34-2604-01 5 13716734 13716734 G T DNAH5 Missense_Mutation p.D4257E 0.19 possibly_damaging(0.841) TCGA-34-2604-01 5 137682784 137682784 C T FAM53C 3'UTR 0.25 TCGA-34-2604-01 5 137682787 137682787 C T FAM53C 3'UTR 0.25 TCGA-34-2604-01 5 139876145 139876145 T G ANKHD1 Missense_Mutation p.D762E 0.11 unknown(0) TCGA-34-2604-01 5 140214254 140214254 T A PCDHA7 Missense_Mutation p.C96S 0.13 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-34-2604-01 5 140235957 140235957 C T PCDHA10 Silent p.I108I 0.41 TCGA-34-2604-01 5 140432164 140432164 C T PCDHB1 Missense_Mutation p.T370I 0.20 deleterious(0.01) possibly_damaging(0.588) TCGA-34-2604-01 5 140754315 140754315 G T PCDHGA6 Missense_Mutation p.R222L 0.34 tolerated_low_confidence(0.18) benign(0.182) TCGA-34-2604-01 5 145508639 145508639 C A LARS Missense_Mutation p.V891F 0.19 deleterious(0.02) benign(0.183) TCGA-34-2604-01 5 147929786 147929786 C T HTR4 Silent p.L22L 0.17 TCGA-34-2604-01 5 156592862 156592862 G T FAM71B Silent p.A106A 0.28 TCGA-34-2604-01 5 158524019 158524019 T C EBF1 Missense_Mutation p.E85G 0.21 deleterious(0) probably_damaging(0.969) TCGA-34-2604-01 5 160114944 160114944 C A ATP10B Silent p.R46R 0.25 TCGA-34-2604-01 5 160763734 160763734 T C GABRB2 Missense_Mutation p.D195G 0.14 tolerated(1) benign(0) TCGA-34-2604-01 5 172517559 172517559 C G CREBRF Missense_Mutation p.P126R 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-34-2604-01 5 172745061 172745061 T C STC2 Missense_Mutation p.K233R 0.39 tolerated_low_confidence(0.58) benign(0.003) TCGA-34-2604-01 5 24498621 24498621 G T CDH10 Silent p.P467P 0.18 TCGA-34-2604-01 5 35065611 35065611 A G PRLR Silent p.H483H 0.17 TCGA-34-2604-01 5 36270075 36270075 G A RANBP3L Silent p.T56T 0.18 TCGA-34-2604-01 5 41061747 41061748 - T MROH2B Frame_Shift_Ins p.N180Kfs*5 0.23 TCGA-34-2604-01 5 41176709 41176709 G T C6 Missense_Mutation p.P346T 0.15 deleterious(0) probably_damaging(1) TCGA-34-2604-01 5 44310632 44310632 C A FGF10 Missense_Mutation p.S109I 0.22 deleterious(0) probably_damaging(0.987) TCGA-34-2604-01 5 5465216 5465216 A C KIAA0947 Silent p.A1923A 0.14 TCGA-34-2604-01 5 65076021 65076021 A G NLN Missense_Mutation p.K192E 0.24 deleterious(0) benign(0.161) TCGA-34-2604-01 5 74892276 74892276 A G POLK Silent p.E586E 0.26 TCGA-34-2604-01 5 79031408 79031408 G T CMYA5 Missense_Mutation p.D2274Y 0.30 benign(0.092) TCGA-34-2604-01 5 90052271 90052271 G T GPR98 Missense_Mutation p.D3861Y 0.24 probably_damaging(0.99) TCGA-34-2604-01 6 106555085 106555085 C T PRDM1 Silent p.D734D 0.13 TCGA-34-2604-01 6 109815285 109815285 G T AK9 Missense_Mutation p.S1811Y 0.16 deleterious(0) probably_damaging(0.979) TCGA-34-2604-01 6 110300687 110300687 C A GPR6 Silent p.G124G 0.12 TCGA-34-2604-01 6 110746271 110746271 C T SLC22A16 Missense_Mutation p.M513I 0.13 deleterious(0.01) benign(0.048) TCGA-34-2604-01 6 112671093 112671093 G T RFPL4B Missense_Mutation p.L61F 0.10 tolerated(0.41) benign(0.004) TCGA-34-2604-01 6 117113928 117113928 T A GPRC6A Missense_Mutation p.T720S 0.14 tolerated(0.09) possibly_damaging(0.597) TCGA-34-2604-01 6 117662647 117662647 A T ROS1 Silent p.T1606T 0.08 TCGA-34-2604-01 6 127440282 127440282 T A RSPO3 5'UTR 0.13 TCGA-34-2604-01 6 129588364 129588364 G T LAMA2 Silent p.L774L 0.14 TCGA-34-2604-01 6 129837420 129837420 G - LAMA2 Frame_Shift_Del p.K3099Nfs*13 0.31 TCGA-34-2604-01 6 132031799 132031799 G T CTAGE9 Missense_Mutation p.A120E 0.10 tolerated(1) benign(0.003) TCGA-34-2604-01 6 132270505 132270505 T C CTGF Missense_Mutation p.M317V 0.13 tolerated(0.9) benign(0.04) TCGA-34-2604-01 6 139591749 139591749 A G TXLNB Silent p.R177R 0.10 TCGA-34-2604-01 6 139591750 139591750 C A TXLNB Missense_Mutation p.R177L 0.11 deleterious(0) probably_damaging(0.994) TCGA-34-2604-01 6 146720379 146720379 C A GRM1 Missense_Mutation p.S735Y 0.10 tolerated(0.27) benign(0.221) TCGA-34-2604-01 6 152642967 152642967 G T SYNE1 Missense_Mutation p.D5324E 0.08 benign(0.001) TCGA-34-2604-01 6 152746684 152746684 T G SYNE1 Splice_Site p.X1701_splice 0.13 TCGA-34-2604-01 6 161966309 161966309 C A PARK2 Intron 0.40 TCGA-34-2604-01 6 165693562 165693562 C T C6orf118 Missense_Mutation p.R465K 0.11 tolerated_low_confidence(0.99) possibly_damaging(0.567) TCGA-34-2604-01 6 167440044 167440044 G A FGFR1OP Missense_Mutation p.G310E 0.09 tolerated(0.08) benign(0.185) TCGA-34-2604-01 6 167754172 167754172 G C TTLL2 Missense_Mutation p.V262L 0.12 deleterious(0) possibly_damaging(0.493) TCGA-34-2604-01 6 26431619 26431619 A T BTN2A3P RNA 0.23 TCGA-34-2604-01 6 28499668 28499668 C T GPX5 Missense_Mutation p.L119F 0.23 deleterious(0) probably_damaging(0.993) TCGA-34-2604-01 6 32171993 32171993 C A NOTCH4 Missense_Mutation p.Q1013H 0.21 deleterious(0.02) benign(0.212) TCGA-34-2604-01 6 33157160 33157160 C A COL11A2 Missense_Mutation p.D57Y 0.28 probably_damaging(0.985) TCGA-34-2604-01 6 38905862 38905862 C G DNAH8 Missense_Mutation p.N3675K 0.11 probably_damaging(0.91) TCGA-34-2604-01 6 43027974 43027974 C T KLC4 Silent p.T9T 0.21 TCGA-34-2604-01 6 47776014 47776014 T C OPN5 Missense_Mutation p.L294P 0.29 deleterious(0) probably_damaging(0.983) TCGA-34-2604-01 6 54214582 54214582 C A TINAG Missense_Mutation p.A323E 0.10 tolerated(0.57) possibly_damaging(0.614) TCGA-34-2604-01 6 70890213 70890213 G T COL19A1 Missense_Mutation p.G893C 0.07 deleterious(0) probably_damaging(1) TCGA-34-2604-01 6 75860976 75860976 A C COL12A1 Nonsense_Mutation p.L1343* 0.12 TCGA-34-2604-01 6 80749528 80749528 A T TTK Missense_Mutation p.D749V 0.09 deleterious(0) possibly_damaging(0.715) TCGA-34-2604-01 6 84233948 84233948 G T PRSS35 Missense_Mutation p.W263L 0.14 deleterious(0) probably_damaging(0.999) TCGA-34-2604-01 6 87726081 87726081 C A HTR1E Silent p.L343L 0.12 TCGA-34-2604-01 6 87965107 87965107 A G ZNF292 Missense_Mutation p.H587R 0.16 deleterious(0) probably_damaging(1) TCGA-34-2604-01 6 90276741 90276741 G T ANKRD6 Missense_Mutation p.V16L 0.14 tolerated(0.06) benign(0.09) TCGA-34-2604-01 7 100679592 100679592 T C MUC17 Missense_Mutation p.L1632P 0.26 unknown(0) TCGA-34-2604-01 7 107204354 107204354 C A COG5 Silent p.P27P 0.33 TCGA-34-2604-01 7 107342428 107342428 C A SLC26A4 Missense_Mutation p.P654T 0.16 tolerated(0.26) benign(0.035) TCGA-34-2604-01 7 107822273 107822273 C T NRCAM Missense_Mutation p.G880D 0.16 deleterious(0.05) probably_damaging(0.958) TCGA-34-2604-01 7 11441449 11441449 G T THSD7A Missense_Mutation p.Q1462K 0.17 deleterious(0.01) possibly_damaging(0.59) TCGA-34-2604-01 7 127326811 127326811 G T SND1 Missense_Mutation p.D75Y 0.09 deleterious(0) probably_damaging(1) TCGA-34-2604-01 7 128484754 128484754 A C FLNC Missense_Mutation p.T1079P 0.12 tolerated(0.08) benign(0.143) TCGA-34-2604-01 7 129125554 129125554 G T STRIP2 Missense_Mutation p.V797L 0.23 tolerated(0.16) possibly_damaging(0.876) TCGA-34-2604-01 7 133812270 133812270 G A LRGUK Silent p.T50T 0.22 TCGA-34-2604-01 7 136588034 136588034 C A CHRM2 Intron 0.17 TCGA-34-2604-01 7 136700284 136700284 T A CHRM2 Silent p.P224P 0.11 TCGA-34-2604-01 7 138603072 138603072 C A KIAA1549 Missense_Mutation p.A434S 0.11 tolerated(1) benign(0.008) TCGA-34-2604-01 7 141734632 141734632 C T MGAM Silent p.G650G 0.09 TCGA-34-2604-01 7 14188809 14188809 T C DGKB Missense_Mutation p.T788A 0.10 deleterious(0.02) benign(0.028) TCGA-34-2604-01 7 142423393 142423393 G T TRBV27 Splice_Site p.X17_splice 0.20 TCGA-34-2604-01 7 142723910 142723910 C A OR9A2 Missense_Mutation p.G104W 0.15 deleterious(0) probably_damaging(0.999) TCGA-34-2604-01 7 143657320 143657320 T C OR2F1 Missense_Mutation p.L86P 0.25 deleterious(0) benign(0.349) TCGA-34-2604-01 7 1484491 1484491 G A MICALL2 Silent p.A405A 0.33 TCGA-34-2604-01 7 149522400 149522400 T C SSPO RNA 0.11 TCGA-34-2604-01 7 156974805 156974805 A G UBE3C Silent p.Q258Q 0.20 TCGA-34-2604-01 7 21723530 21723530 C A DNAH11 Missense_Mutation p.S1870R 0.19 possibly_damaging(0.522) TCGA-34-2604-01 7 30878868 30878868 G - FAM188B Frame_Shift_Del p.W431* 0.20 TCGA-34-2604-01 7 31146272 31146272 C T ADCYAP1R1 Missense_Mutation p.L489F 0.14 tolerated(0.41) possibly_damaging(0.846) TCGA-34-2604-01 7 31617705 31617705 C A CCDC129 Missense_Mutation p.S302Y 0.12 deleterious(0) probably_damaging(0.989) TCGA-34-2604-01 7 31890296 31890296 G A PDE1C Silent p.Y330Y 0.09 TCGA-34-2604-01 7 35129970 35129970 A G DPY19L2P1 RNA 0.10 TCGA-34-2604-01 7 35293189 35293189 C A TBX20 Missense_Mutation p.A15S 0.11 deleterious(0) probably_damaging(0.991) TCGA-34-2604-01 7 35923504 35923504 C G SEPT7 Missense_Mutation p.R244G 0.10 tolerated(0.07) benign(0.127) TCGA-34-2604-01 7 44047305 44047305 C T SPDYE1 Intron 0.07 TCGA-34-2604-01 7 53103675 53103675 G T POM121L12 Missense_Mutation p.G104V 0.14 tolerated(0.3) probably_damaging(0.988) TCGA-34-2604-01 7 54617574 54617574 C T VSTM2A Silent p.S115S 0.29 TCGA-34-2604-01 7 64167146 64167146 C G ZNF107 Missense_Mutation p.T155S 0.12 tolerated(0.11) possibly_damaging(0.568) TCGA-34-2604-01 7 71036280 71036280 A C WBSCR17 Missense_Mutation p.M325L 0.19 tolerated(0.41) benign(0.008) TCGA-34-2604-01 7 72178605 72178605 T C TYW1B Silent p.T74T 0.13 TCGA-34-2604-01 7 750963 750963 C A PRKAR1B Intron 0.26 TCGA-34-2604-01 7 80276087 80276087 G C CD36 Missense_Mutation p.A11P 0.17 deleterious(0.05) possibly_damaging(0.627) TCGA-34-2604-01 7 81331831 81331831 C T HGF 3'UTR 0.15 TCGA-34-2604-01 7 82545487 82545487 G A PCLO Nonsense_Mutation p.Q3939* 0.12 TCGA-34-2604-01 7 82584607 82584607 T C PCLO Missense_Mutation p.T1888A 0.26 unknown(0) TCGA-34-2604-01 7 84751170 84751170 C A SEMA3D Missense_Mutation p.S13I 0.09 deleterious_low_confidence(0.03) benign(0.08) TCGA-34-2604-01 7 86415678 86415678 C A GRM3 Silent p.T190T 0.09 TCGA-34-2604-01 7 87370888 87370888 A T RUNDC3B Missense_Mutation p.I225F 0.08 deleterious(0.05) benign(0.105) TCGA-34-2604-01 7 87407270 87407270 C A RUNDC3B Missense_Mutation p.L336M 0.08 tolerated(0.07) benign(0.311) TCGA-34-2604-01 7 91715664 91715664 G T AKAP9 Silent p.L3049L 0.20 TCGA-34-2604-01 7 96747023 96747023 G T ACN9 5'UTR 0.06 TCGA-34-2604-01 7 98567914 98567914 G T TRRAP Missense_Mutation p.E2557D 0.14 benign(0.002) TCGA-34-2604-01 8 110432817 110432817 G T PKHD1L1 Missense_Mutation p.Q865H 0.13 tolerated(0.13) benign(0.003) TCGA-34-2604-01 8 110437344 110437344 G T PKHD1L1 Missense_Mutation p.V910F 0.24 tolerated(0.06) benign(0.006) TCGA-34-2604-01 8 110563104 110563104 A G EBAG9 Silent p.T17T 0.10 TCGA-34-2604-01 8 113392602 113392602 C A CSMD3 Nonsense_Mutation p.G2039* 0.16 TCGA-34-2604-01 8 118159214 118159214 G A SLC30A8 Silent p.P31P 0.21 TCGA-34-2604-01 8 120118441 120118441 C G COLEC10 3'UTR 0.22 TCGA-34-2604-01 8 131826445 131826445 A T ADCY8 Missense_Mutation p.L928H 0.04 deleterious(0) probably_damaging(0.997) TCGA-34-2604-01 8 133141444 133141444 G A KCNQ3 3'UTR 0.08 TCGA-34-2604-01 8 133192492 133192492 C G KCNQ3 Missense_Mutation p.R230P 0.05 deleterious(0) probably_damaging(0.996) TCGA-34-2604-01 8 134488406 134488406 C A ST3GAL1 5'UTR 0.33 TCGA-34-2604-01 8 139268961 139268961 C A FAM135B Silent p.V113V 0.37 TCGA-34-2604-01 8 140630921 140630921 G A KCNK9 Silent p.I235I 0.13 TCGA-34-2604-01 8 140631276 140631276 C A KCNK9 Missense_Mutation p.G117V 0.44 deleterious(0) probably_damaging(1) TCGA-34-2604-01 8 143866620 143866620 C T LY6D 3'UTR 0.22 TCGA-34-2604-01 8 144661913 144661913 T A EEF1D 3'UTR 0.06 TCGA-34-2604-01 8 146107136 146107136 C G ZNF250 Missense_Mutation p.E483Q 0.17 tolerated(0.13) benign(0.009) TCGA-34-2604-01 8 18079902 18079902 G T NAT1 Missense_Mutation p.G178C 0.14 deleterious(0) probably_damaging(0.99) TCGA-34-2604-01 8 23112820 23112820 G T CHMP7 Missense_Mutation p.V178L 0.15 tolerated(0.43) benign(0.032) TCGA-34-2604-01 8 27358526 27358526 A T EPHX2 Missense_Mutation p.Q62L 0.13 deleterious(0) benign(0.261) TCGA-34-2604-01 8 35588591 35588591 G T UNC5D Missense_Mutation p.M581I 0.23 tolerated(0.07) benign(0.208) TCGA-34-2604-01 8 37688272 37688272 C T GPR124 Missense_Mutation p.R255C 0.44 deleterious(0) probably_damaging(0.985) TCGA-34-2604-01 8 37796292 37796292 C A GOT1L1 Missense_Mutation p.G75C 0.07 deleterious(0) probably_damaging(1) TCGA-34-2604-01 8 38947573 38947573 T G ADAM9 Missense_Mutation p.N692K 0.08 deleterious(0) benign(0.027) TCGA-34-2604-01 8 39644509 39644509 G C ADAM2 Missense_Mutation p.A292G 0.08 tolerated(1) benign(0.044) TCGA-34-2604-01 8 48879962 48879962 G A MCM4 Missense_Mutation p.G364E 0.36 deleterious(0) probably_damaging(0.993) TCGA-34-2604-01 8 70744537 70744537 G C SLCO5A1 Silent p.L124L 0.11 TCGA-34-2604-01 8 72946576 72946576 C T TRPA1 Silent p.E864E 0.21 TCGA-34-2604-01 8 77763576 77763576 C A ZFHX4 Missense_Mutation p.S1473R 0.23 benign(0.03) TCGA-34-2604-01 8 82614910 82614910 T A ZFAND1 3'UTR 0.07 TCGA-34-2604-01 8 95541395 95541395 C T KIAA1429 Silent p.E261E 0.23 TCGA-34-2604-01 9 100971080 100971080 G A TBC1D2 Silent p.L674L 0.28 TCGA-34-2604-01 9 111745534 111745534 C T CTNNAL1 Missense_Mutation p.R264H 0.10 deleterious(0.04) probably_damaging(1) TCGA-34-2604-01 9 123906256 123906256 G T CNTRL Missense_Mutation p.V983L 0.22 possibly_damaging(0.677) TCGA-34-2604-01 9 125391204 125391204 G T OR1B1 Missense_Mutation p.A204D 0.18 deleterious(0) possibly_damaging(0.899) TCGA-34-2604-01 9 125585446 125585446 C A PDCL Missense_Mutation p.R68L 0.18 deleterious(0) probably_damaging(0.948) TCGA-34-2604-01 9 127572630 127572630 G A OLFML2A Missense_Mutation p.R633Q 0.18 deleterious(0.01) possibly_damaging(0.553) TCGA-34-2604-01 9 127965285 127965285 A G RABEPK Splice_Site 0.19 TCGA-34-2604-01 9 128113116 128113116 T C GAPVD1 Silent p.C1205C 0.26 TCGA-34-2604-01 9 131670788 131670788 G C LRRC8A Missense_Mutation p.E449Q 0.20 tolerated(0.24) benign(0.064) TCGA-34-2604-01 9 131870334 131870334 T A CRAT Missense_Mutation p.K17M 0.27 deleterious(0) possibly_damaging(0.627) TCGA-34-2604-01 9 135173622 135173622 T A SETX Missense_Mutation p.N1876Y 0.22 deleterious(0) benign(0.396) TCGA-34-2604-01 9 138678181 138678181 C T KCNT1 Missense_Mutation p.R1106W 0.31 deleterious(0.01) probably_damaging(0.995) TCGA-34-2604-01 9 140809110 140809110 G T CACNA1B Missense_Mutation p.L209F 0.35 deleterious(0) probably_damaging(0.961) TCGA-34-2604-01 9 32630606 32630606 G T TAF1L Missense_Mutation p.P1658T 0.29 tolerated_low_confidence(0.09) probably_damaging(0.999) TCGA-34-2604-01 9 35842621 35842621 C T TMEM8B Silent p.A62A 0.32 TCGA-34-2604-01 9 43625540 43625540 C A SPATA31A6 Silent p.V1049V 0.18 TCGA-34-2604-01 9 72067201 72067201 T A APBA1 Missense_Mutation p.Q602L 0.32 deleterious(0) probably_damaging(0.999) TCGA-34-2604-01 9 74865499 74865499 G C GDA Intron 0.29 TCGA-34-2604-01 9 77277449 77277449 G T RORB Silent p.V273V 0.28 TCGA-34-2604-01 9 79635369 79635369 A T FOXB2 Nonsense_Mutation p.K267* 0.16 TCGA-34-2604-01 9 80262729 80262729 C A GNA14 5'UTR 0.30 TCGA-34-2604-01 9 84608408 84608408 C A SPATA31D1 Missense_Mutation p.T1008N 0.24 tolerated(0.18) benign(0.262) TCGA-34-2604-01 9 90387869 90387869 G T CTSL3P RNA 0.18 TCGA-34-2604-01 9 90387870 90387870 G T CTSL3P RNA 0.18 TCGA-34-2604-01 9 95766349 95766349 A T FGD3 Missense_Mutation p.I204F 0.25 deleterious(0) possibly_damaging(0.565) TCGA-34-2604-01 X 12994419 12994419 C G TMSB4X Missense_Mutation p.F13L 0.10 deleterious(0.03) benign(0.024) TCGA-34-2604-01 X 135579717 135579717 G C HTATSF1 Intron 0.25 TCGA-34-2604-01 X 140969422 140969422 A C MAGEC3 Missense_Mutation p.Y250S 0.15 deleterious(0.01) possibly_damaging(0.727) TCGA-34-2604-01 X 140984750 140984750 C A MAGEC3 Silent p.I402I 0.17 TCGA-34-2604-01 X 150349813 150349813 C G GPR50 Missense_Mutation p.D586E 0.14 tolerated_low_confidence(0.27) benign(0.026) TCGA-34-2604-01 X 150832687 150832687 C T PASD1 Missense_Mutation p.S313L 0.14 tolerated(0.39) benign(0.277) TCGA-34-2604-01 X 15320887 15320887 T C ASB11 Missense_Mutation p.Q75R 0.14 deleterious(0.04) benign(0.163) TCGA-34-2604-01 X 153461460 153461460 G T OPN1MW Missense_Mutation p.D342Y 0.12 deleterious(0.02) possibly_damaging(0.896) TCGA-34-2604-01 X 153586644 153586644 C A FLNA Missense_Mutation p.V1560L 0.44 tolerated(0.1) benign(0.11) TCGA-34-2604-01 X 154124456 154124456 G T F8 Missense_Mutation p.R2109S 0.29 deleterious(0.05) benign(0.272) TCGA-34-2604-01 X 1584900 1584900 G T P2RY8 Silent p.L184L 0.10 TCGA-34-2604-01 X 17745108 17745108 G T NHS Missense_Mutation p.R940I 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-34-2604-01 X 22291686 22291686 T A ZNF645 Missense_Mutation p.V193E 0.12 tolerated(0.29) benign(0.14) TCGA-34-2604-01 X 30236690 30236690 C A MAGEB2 Intron 0.17 TCGA-34-2604-01 X 35988905 35988905 C A CXorf22 Missense_Mutation p.P612Q 0.12 deleterious(0.04) probably_damaging(0.993) TCGA-34-2604-01 X 36122743 36122743 T C CHDC2 Missense_Mutation p.L327S 0.17 deleterious(0) probably_damaging(0.993) TCGA-34-2604-01 X 37587067 37587067 T A XK Missense_Mutation p.F229L 0.10 deleterious(0) probably_damaging(0.955) TCGA-34-2604-01 X 38144763 38144763 T A RPGR 3'UTR 0.18 TCGA-34-2604-01 X 48209459 48209459 T C SSX3 Silent p.G143G 0.13 TCGA-34-2604-01 X 48320458 48320458 C A SLC38A5 Missense_Mutation p.V236L 0.23 tolerated(0.77) benign(0.003) TCGA-34-2604-01 X 52842204 52842204 C A XAGE5 Missense_Mutation p.T38N 0.21 deleterious(0.03) benign(0.293) TCGA-34-2604-01 X 52895563 52895563 G T XAGE3 Missense_Mutation p.P29H 0.16 tolerated(0.1) probably_damaging(0.983) TCGA-34-2604-01 X 54839564 54839564 G A MAGED2 Silent p.E393E 0.17 TCGA-34-2604-01 X 86773315 86773315 C A KLHL4 Missense_Mutation p.A140E 0.14 tolerated(0.42) benign(0.005) TCGA-34-2604-01 X 91134245 91134245 G T PCDH11X Missense_Mutation p.E1002D 0.15 deleterious(0) benign(0.044) TCGA-34-2605-01 10 14572392 14572392 G A FAM107B Missense_Mutation p.P198S 0.26 deleterious(0.05) probably_damaging(0.998) TCGA-34-2605-01 10 18250567 18250567 A G SLC39A12 Missense_Mutation p.R107G 0.57 tolerated(0.29) benign(0.001) TCGA-34-2605-01 10 45473163 45473163 C G C10orf10 Missense_Mutation p.D106H 0.08 deleterious(0.02) probably_damaging(0.979) TCGA-34-2605-01 10 50531516 50531516 C A C10orf71 Missense_Mutation p.T309K 0.52 tolerated(0.16) benign(0.007) TCGA-34-2605-01 10 81373813 81373813 G T SFTPA1 Missense_Mutation p.G246W 0.53 deleterious(0) probably_damaging(1) TCGA-34-2605-01 10 84718712 84718712 G T NRG3 Missense_Mutation p.A389S 0.38 tolerated(0.09) benign(0.167) TCGA-34-2605-01 10 89717708 89717708 C T PTEN Nonsense_Mutation p.Q245* 0.34 TCGA-34-2605-01 10 98744343 98744343 G A C10orf12 Missense_Mutation p.E1066K 0.21 deleterious(0.04) benign(0.135) TCGA-34-2605-01 11 108385583 108385583 G C EXPH5 Missense_Mutation p.S217R 0.06 tolerated(0.05) benign(0.024) TCGA-34-2605-01 11 113141019 113141019 C A NCAM1 Missense_Mutation p.N796K 0.20 tolerated(0.26) possibly_damaging(0.747) TCGA-34-2605-01 11 116729111 116729111 G T SIK3 Silent p.R918R 0.52 TCGA-34-2605-01 11 117257927 117257927 C G CEP164 Missense_Mutation p.T578R 0.47 tolerated(0.49) benign(0.294) TCGA-34-2605-01 11 124413384 124413384 G T OR8B12 Missense_Mutation p.T56N 0.49 deleterious_low_confidence(0.03) possibly_damaging(0.461) TCGA-34-2605-01 11 22387151 22387151 A G SLC17A6 Silent p.A269A 0.47 TCGA-34-2605-01 11 30937197 30937197 C T DCDC1 Missense_Mutation p.G1172R 0.53 deleterious(0.04) probably_damaging(0.979) TCGA-34-2605-01 11 55032637 55032637 G T TRIM48 Silent p.L102L 0.38 TCGA-34-2605-01 11 5529908 5529908 G A UBQLN3 Missense_Mutation p.S294L 0.50 tolerated(0.13) possibly_damaging(0.907) TCGA-34-2605-01 11 5730735 5730735 G T TRIM22 Missense_Mutation p.G452C 0.49 tolerated(0.13) possibly_damaging(0.698) TCGA-34-2605-01 11 58318702 58318702 C A LPXN Missense_Mutation p.A113S 0.48 tolerated(0.68) benign(0.004) TCGA-34-2605-01 11 61254010 61254010 A T PPP1R32 Silent p.L254L 0.40 TCGA-34-2605-01 11 6190978 6190978 G T OR52B2 Missense_Mutation p.D193E 0.30 deleterious(0) possibly_damaging(0.906) TCGA-34-2605-01 11 62469945 62469945 C T BSCL2 Missense_Mutation p.D161N 0.33 tolerated(0.07) probably_damaging(0.962) TCGA-34-2605-01 11 65267814 65267814 G C MALAT1 RNA 0.17 TCGA-34-2605-01 11 74979975 74979975 G C ARRB1 Missense_Mutation p.L351V 0.43 deleterious(0) probably_damaging(1) TCGA-34-2605-01 11 76372292 76372292 C G LRRC32 Silent p.L115L 0.29 TCGA-34-2605-01 11 78413185 78413185 G T TENM4 Silent p.I1491I 0.38 TCGA-34-2605-01 11 92714703 92714703 G T MTNR1B Missense_Mutation p.G105V 0.50 deleterious(0) probably_damaging(0.949) TCGA-34-2605-01 12 100957262 100957262 C A NR1H4 Missense_Mutation p.Q486K 0.08 tolerated(0.09) possibly_damaging(0.619) TCGA-34-2605-01 12 101598279 101598279 G C SLC5A8 Missense_Mutation p.T139R 0.19 deleterious(0) probably_damaging(0.982) TCGA-34-2605-01 12 10958752 10958752 G A TAS2R8 Silent p.L276L 0.17 TCGA-34-2605-01 12 122369771 122369771 G C WDR66 Missense_Mutation p.R289S 0.41 tolerated(0.61) benign(0.069) TCGA-34-2605-01 12 122862088 122862088 G A CLIP1 Nonsense_Mutation p.Q169* 0.07 TCGA-34-2605-01 12 15034980 15034980 T A MGP 3'UTR 0.12 TCGA-34-2605-01 12 19427706 19427706 C G PLEKHA5 Missense_Mutation p.Q368E 0.11 tolerated(0.14) benign(0.141) TCGA-34-2605-01 12 29446450 29446450 T G FAR2 Intron 0.13 TCGA-34-2605-01 12 34179756 34179756 G C ALG10 Missense_Mutation p.C443S 0.14 deleterious(0.02) benign(0.001) TCGA-34-2605-01 12 40689419 40689419 C G LRRK2 Silent p.L1023L 0.55 TCGA-34-2605-01 12 49233675 49233675 C A DDX23 Silent p.L144L 0.09 TCGA-34-2605-01 12 53004570 53004570 C T KRT73 Missense_Mutation p.C387Y 0.05 tolerated(0.41) possibly_damaging(0.797) TCGA-34-2605-01 12 54428194 54428194 A G HOXC5 Missense_Mutation p.E196G 0.50 deleterious(0) probably_damaging(0.996) TCGA-34-2605-01 12 55641797 55641797 C A OR6C74 Missense_Mutation p.H242Q 0.52 deleterious_low_confidence(0) possibly_damaging(0.557) TCGA-34-2605-01 12 55726162 55726162 G T OR6C3 Silent p.P226P 0.45 TCGA-34-2605-01 12 56030951 56030951 C A OR10P1 Silent p.A92A 0.47 TCGA-34-2605-01 12 665747 665747 A T B4GALNT3 Nonsense_Mutation p.K699* 0.12 TCGA-34-2605-01 12 67699991 67699991 A T CAND1 Missense_Mutation p.H848L 0.08 tolerated(0.3) benign(0.142) TCGA-34-2605-01 12 72956765 72956765 C A TRHDE Missense_Mutation p.H618N 0.41 deleterious(0) benign(0.086) TCGA-34-2605-01 12 75601719 75601719 C A KCNC2 Silent p.G15G 0.08 TCGA-34-2605-01 12 78515934 78515934 G T NAV3 Missense_Mutation p.V1322F 0.49 tolerated(0.2) probably_damaging(0.999) TCGA-34-2605-01 12 8085631 8085631 C - SLC2A3 Frame_Shift_Del p.G74Vfs*2 0.53 TCGA-34-2605-01 12 8630116 8630116 G A CLEC6A 3'UTR 0.48 TCGA-34-2605-01 12 9001318 9001318 C G A2ML1 Silent p.V612V 0.12 TCGA-34-2605-01 12 96254945 96254945 G A SNRPF Splice_Site p.X2_splice 0.06 TCGA-34-2605-01 12 99119233 99119233 G A APAF1 Missense_Mutation p.R1124K 0.12 tolerated(1) benign(0.002) TCGA-34-2605-01 12 99548191 99548191 G C ANKS1B Intron 0.46 TCGA-34-2605-01 12 99640413 99640413 C G ANKS1B Missense_Mutation p.K662N 0.21 tolerated(0.29) benign(0.186) TCGA-34-2605-01 13 101797144 101797144 T A NALCN Missense_Mutation p.K648M 0.54 deleterious(0) probably_damaging(0.977) TCGA-34-2605-01 13 108861558 108861558 C A LIG4 Missense_Mutation p.G687C 0.42 deleterious(0) probably_damaging(1) TCGA-34-2605-01 13 32376658 32376658 G A RXFP2 3'UTR 0.54 TCGA-34-2605-01 13 32826029 32826029 G A FRY Silent p.E2395E 0.50 TCGA-34-2605-01 13 61059934 61059934 A G TDRD3 Missense_Mutation p.K190R 0.60 tolerated(0.33) benign(0.073) TCGA-34-2605-01 13 61986988 61986988 G A PCDH20 Missense_Mutation p.S415F 0.16 deleterious(0) benign(0.231) TCGA-34-2605-01 13 92345947 92345947 A G GPC5 Missense_Mutation p.M278V 0.48 tolerated(0.25) benign(0.002) TCGA-34-2605-01 14 100188368 100188368 G C CYP46A1 Missense_Mutation p.D381H 0.35 tolerated(0.05) benign(0.34) TCGA-34-2605-01 14 105204716 105204716 A C ADSSL1 Missense_Mutation p.N143T 0.15 deleterious(0.04) probably_damaging(0.931) TCGA-34-2605-01 14 105395139 105395139 C A PLD4 Missense_Mutation p.P113H 0.49 tolerated(0.06) possibly_damaging(0.873) TCGA-34-2605-01 14 105414683 105414683 G C AHNAK2 Missense_Mutation p.Q2369E 0.32 benign(0.001) TCGA-34-2605-01 14 105414721 105414721 G C AHNAK2 Missense_Mutation p.S2356C 0.35 benign(0.032) TCGA-34-2605-01 14 106054032 106054032 C G IGHA2 Missense_Mutation p.E163Q 0.36 tolerated(0.36) benign(0.012) TCGA-34-2605-01 14 106054535 106054535 C G IGHA2 Silent p.T66T 0.32 TCGA-34-2605-01 14 106173481 106173481 C T IGHA1 3'UTR 0.12 TCGA-34-2605-01 14 22337506 22337506 C A TRAV13-1 Silent p.T99T 0.48 TCGA-34-2605-01 14 23859293 23859294 GG TTGT MYH6 Frame_Shift_Ins p.S1235Yfs*30 0.30 TCGA-34-2605-01 14 35492222 35492222 G T SRP54 Missense_Mutation p.L421F 0.41 deleterious(0.01) possibly_damaging(0.586) TCGA-34-2605-01 14 45465099 45465099 G T FAM179B Missense_Mutation p.A733S 0.39 tolerated(0.14) benign(0.012) TCGA-34-2605-01 14 45465100 45465100 C G FAM179B Missense_Mutation p.A733G 0.39 tolerated(0.21) benign(0.007) TCGA-34-2605-01 14 64935946 64935946 A G AKAP5 Silent p.E278E 0.50 TCGA-34-2605-01 14 81659125 81659125 T G GTF2A1 Missense_Mutation p.Q224P 0.15 tolerated(0.06) probably_damaging(0.992) TCGA-34-2605-01 14 95030285 95030285 C A SERPINA4 Missense_Mutation p.L156M 0.48 deleterious(0.01) probably_damaging(0.97) TCGA-34-2605-01 15 102346825 102346825 A G OR4F6 Silent p.R301R 0.28 TCGA-34-2605-01 15 23811028 23811028 C A MKRN3 Silent p.P33P 0.23 TCGA-34-2605-01 15 23811152 23811152 G T MKRN3 Missense_Mutation p.A75S 0.25 tolerated(0.14) benign(0.122) TCGA-34-2605-01 15 23889826 23889826 C T MAGEL2 Missense_Mutation p.E419K 0.17 tolerated(0.09) benign(0.444) TCGA-34-2605-01 15 25322084 25322084 C A SNORD116-9 3'Flank 0.36 TCGA-34-2605-01 15 25429523 25429523 A T SNORD115-8 RNA 0.29 TCGA-34-2605-01 15 28388050 28388050 C G HERC2 Missense_Mutation p.A3823P 0.27 probably_damaging(0.961) TCGA-34-2605-01 15 28465732 28465732 A C HERC2 Missense_Mutation p.I1904R 0.05 benign(0.149) TCGA-34-2605-01 15 38641679 38641679 G T SPRED1 Missense_Mutation p.Q213H 0.08 tolerated(0.21) benign(0.003) TCGA-34-2605-01 15 41476609 41476609 T G EXD1 Missense_Mutation p.L355F 0.32 tolerated(0.08) benign(0.03) TCGA-34-2605-01 15 48500023 48500023 C G SLC12A1 Missense_Mutation p.A36G 0.38 tolerated(0.53) benign(0) TCGA-34-2605-01 15 48789529 48789529 G A FBN1 Missense_Mutation p.R743C 0.40 possibly_damaging(0.88) TCGA-34-2605-01 15 52656814 52656814 C G MYO5A Silent p.L1082L 0.12 TCGA-34-2605-01 15 54919280 54919280 C A UNC13C Missense_Mutation p.S2205Y 0.16 deleterious_low_confidence(0) possibly_damaging(0.451) TCGA-34-2605-01 15 55652441 55652441 T C CCPG1 Silent p.K510K 0.17 TCGA-34-2605-01 15 59499519 59499519 T A LDHAL6B Missense_Mutation p.V127D 0.32 tolerated(0.06) possibly_damaging(0.886) TCGA-34-2605-01 15 62978979 62978979 C T TLN2 Missense_Mutation p.P366L 0.07 deleterious(0) probably_damaging(0.93) TCGA-34-2605-01 15 64367684 64367684 C T FAM96A Intron 0.31 TCGA-34-2605-01 15 65295493 65295493 T A MTFMT Missense_Mutation p.Q359H 0.32 tolerated(0.18) benign(0.001) TCGA-34-2605-01 15 69329445 69329445 G A NOX5 Nonsense_Mutation p.W422* 0.45 TCGA-34-2605-01 15 75982929 75982929 C T CSPG4 Silent p.L159L 0.23 TCGA-34-2605-01 15 76641018 76641018 A T SCAPER Missense_Mutation p.W1387R 0.27 deleterious(0) probably_damaging(1) TCGA-34-2605-01 15 79265669 79265669 C A RASGRF1 Silent p.L1212L 0.36 TCGA-34-2605-01 15 85401283 85401283 C A ALPK3 Missense_Mutation p.A1307D 0.27 tolerated_low_confidence(0.15) benign(0.144) TCGA-34-2605-01 15 87066151 87066151 G T AGBL1 Missense_Mutation p.S843I 0.34 tolerated(0.07) benign(0.285) TCGA-34-2605-01 15 89060170 89060170 C A DET1 Missense_Mutation p.G447W 0.32 deleterious(0) probably_damaging(1) TCGA-34-2605-01 15 90210884 90210884 C G PLIN1 Missense_Mutation p.E304D 0.48 tolerated(0.31) benign(0.2) TCGA-34-2605-01 16 20491894 20491894 G T ACSM2A Splice_Site p.X428_splice 0.50 TCGA-34-2605-01 16 20491895 20491895 G T ACSM2A Missense_Mutation p.D428Y 0.50 deleterious(0) probably_damaging(0.943) TCGA-34-2605-01 16 26147326 26147326 C A HS3ST4 Silent p.G376G 0.47 TCGA-34-2605-01 16 26147327 26147327 C A HS3ST4 Missense_Mutation p.L377I 0.46 tolerated(0.06) possibly_damaging(0.704) TCGA-34-2605-01 16 27781181 27781181 G T KIAA0556 Splice_Site p.X1326_splice 0.11 TCGA-34-2605-01 16 30980976 30980976 G T SETD1A Silent p.V994V 0.44 TCGA-34-2605-01 16 31193998 31193998 C T FUS Intron 0.25 TCGA-34-2605-01 16 47644810 47644810 G T PHKB Silent p.V479V 0.39 TCGA-34-2605-01 16 50733533 50733533 G A NOD2 Missense_Mutation p.D70N 0.59 deleterious(0) probably_damaging(0.971) TCGA-34-2605-01 16 50818257 50818257 C G CYLD Missense_Mutation p.S615C 0.21 deleterious(0) probably_damaging(0.999) TCGA-34-2605-01 16 56448227 56448227 C T AMFR Silent p.L95L 0.48 TCGA-34-2605-01 16 71779453 71779453 C A AP1G1 Missense_Mutation p.V602L 0.47 tolerated(0.31) benign(0.001) TCGA-34-2605-01 16 72829634 72829634 G A ZFHX3 Missense_Mutation p.T2316I 0.04 probably_damaging(0.974) TCGA-34-2605-01 16 75678299 75678299 C G KARS Missense_Mutation p.V10L 0.47 tolerated_low_confidence(0.21) benign(0.002) TCGA-34-2605-01 16 85952106 85952106 C A IRF8 Missense_Mutation p.L229M 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-34-2605-01 17 26684763 26684763 G C TMEM199 Missense_Mutation p.E24Q 0.32 tolerated(0.08) benign(0.184) TCGA-34-2605-01 17 28525439 28525439 G A SLC6A4 3'UTR 0.59 TCGA-34-2605-01 17 3119826 3119826 C G OR1A1 Missense_Mutation p.N304K 0.05 tolerated(0.29) benign(0.01) TCGA-34-2605-01 17 3301012 3301012 A T OR1E1 Silent p.S231S 0.05 TCGA-34-2605-01 17 38574140 38574145 GCGTCG - TOP2A 5'UTR 0.53 TCGA-34-2605-01 17 40720860 40720860 G A MLX Missense_Mutation p.E113K 0.29 deleterious(0.04) probably_damaging(0.998) TCGA-34-2605-01 17 4607414 4607414 C A PELP1 5'UTR 0.62 TCGA-34-2605-01 17 46674014 46674014 C T HOXB6 Missense_Mutation p.G146S 0.06 deleterious(0.03) benign(0.087) TCGA-34-2605-01 17 4688740 4688740 G T VMO1 Missense_Mutation p.L176M 0.62 deleterious(0) probably_damaging(0.998) TCGA-34-2605-01 17 72764334 72764334 C A SLC9A3R1 Missense_Mutation p.P283T 0.54 tolerated(0.1) benign(0.009) TCGA-34-2605-01 17 7700726 7700726 C G DNAH2 Missense_Mutation p.S2653C 0.22 possibly_damaging(0.895) TCGA-34-2605-01 17 8224337 8224337 T A ARHGEF15 3'UTR 0.57 TCGA-34-2605-01 18 13387675 13387675 G A LDLRAD4 5'UTR 0.17 TCGA-34-2605-01 18 21001339 21001339 G C TMEM241 Missense_Mutation p.S63R 0.43 tolerated(0.37) benign(0.012) TCGA-34-2605-01 18 21914289 21914289 C G OSBPL1A Missense_Mutation p.E134Q 0.16 deleterious(0.04) benign(0.035) TCGA-34-2605-01 18 28586953 28586953 A G DSC3 Missense_Mutation p.V603A 0.14 tolerated(0.72) benign(0.004) TCGA-34-2605-01 18 43246916 43246916 A T SLC14A2 Missense_Mutation p.E525V 0.33 deleterious(0) possibly_damaging(0.894) TCGA-34-2605-01 18 43310993 43310993 G T SLC14A1 Silent p.V111V 0.19 TCGA-34-2605-01 18 47340390 47340390 G T ACAA2 5'Flank 0.33 TCGA-34-2605-01 18 52265244 52265244 T C DYNAP Silent p.P167P 0.18 TCGA-34-2605-01 18 66504409 66504409 C A CCDC102B Missense_Mutation p.L137M 0.26 deleterious(0) probably_damaging(0.992) TCGA-34-2605-01 18 66513598 66513598 G A CCDC102B Silent p.L292L 0.27 TCGA-34-2605-01 18 905347 905347 C A ADCYAP1 5'UTR 0.40 TCGA-34-2605-01 19 10426693 10426693 C G RAVER1 3'Flank 0.12 TCGA-34-2605-01 19 10610275 10610275 G C KEAP1 Missense_Mutation p.I145M 0.18 deleterious(0) probably_damaging(0.995) TCGA-34-2605-01 19 14748947 14748947 G A EMR3 Missense_Mutation p.S485F 0.34 tolerated(0.1) benign(0.027) TCGA-34-2605-01 19 19455717 19455717 A G MAU2 Silent p.A379A 0.34 TCGA-34-2605-01 19 21131964 21131964 C T ZNF85 Missense_Mutation p.S215L 0.06 tolerated(0.05) benign(0.32) TCGA-34-2605-01 19 22574568 22574568 T A ZNF98 Missense_Mutation p.Y490F 0.14 deleterious(0.01) possibly_damaging(0.901) TCGA-34-2605-01 19 23414113 23414113 C G ZNF724P Missense_Mutation p.E61Q 0.23 deleterious(0.02) possibly_damaging(0.727) TCGA-34-2605-01 19 31040366 31040366 C A ZNF536 Missense_Mutation p.N1280K 0.49 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-34-2605-01 19 35449832 35449832 C G ZNF792 Silent p.P309P 0.28 TCGA-34-2605-01 19 35749958 35749958 A T LSR Missense_Mutation p.I237F 0.32 deleterious(0) benign(0.393) TCGA-34-2605-01 19 40411650 40411650 C G FCGBP Missense_Mutation p.Q1326H 0.25 possibly_damaging(0.665) TCGA-34-2605-01 19 4219741 4219741 G T ANKRD24 Nonsense_Mutation p.E1053* 0.18 TCGA-34-2605-01 19 42354626 42354626 T C DMRTC2 Silent p.S283S 0.46 TCGA-34-2605-01 19 44159614 44159614 G A PLAUR Missense_Mutation p.T195I 0.52 deleterious(0.02) probably_damaging(0.99) TCGA-34-2605-01 19 4548389 4548389 A T SEMA6B Missense_Mutation p.L447Q 0.21 deleterious(0) probably_damaging(1) TCGA-34-2605-01 19 50794302 50794302 G A MYH14 Missense_Mutation p.M1708I 0.60 tolerated(0.12) benign(0.002) TCGA-34-2605-01 19 54445539 54445539 C A CACNG7 Missense_Mutation p.P274T 0.50 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-34-2605-01 19 58265690 58265690 C G ZNF776 Missense_Mutation p.H398D 0.31 deleterious(0) probably_damaging(1) TCGA-34-2605-01 19 58596472 58596472 C T ZSCAN18 Silent p.R427R 0.16 TCGA-34-2605-01 19 6712406 6712406 C A C3 Silent p.T377T 0.25 TCGA-34-2605-01 19 9324971 9324971 C A OR7D4 Silent p.P181P 0.37 TCGA-34-2605-01 1 115576885 115576885 C T TSHB 3'UTR 0.15 TCGA-34-2605-01 1 118008970 118008970 G C MAN1A2 Silent p.R363R 0.24 TCGA-34-2605-01 1 151633325 151633325 C T SNX27 Missense_Mutation p.S263L 0.59 tolerated(0.09) possibly_damaging(0.742) TCGA-34-2605-01 1 152976039 152976039 C A SPRR3 3'UTR 0.56 TCGA-34-2605-01 1 156915926 156915926 C A ARHGEF11 Missense_Mutation p.R908L 0.52 deleterious(0.01) probably_damaging(0.998) TCGA-34-2605-01 1 158152685 158152685 C A CD1D Missense_Mutation p.L209M 0.52 deleterious(0) probably_damaging(0.918) TCGA-34-2605-01 1 158226771 158226771 A C CD1A Missense_Mutation p.E267A 0.07 deleterious(0) possibly_damaging(0.59) TCGA-34-2605-01 1 158609671 158609671 A T SPTA1 Missense_Mutation p.W1622R 0.03 deleterious(0) probably_damaging(1) TCGA-34-2605-01 1 159170697 159170697 G C CADM3 Missense_Mutation p.K428N 0.59 deleterious(0) probably_damaging(0.999) TCGA-34-2605-01 1 168035687 168035687 G A DCAF6 Missense_Mutation p.R890Q 0.10 tolerated(0.12) probably_damaging(0.996) TCGA-34-2605-01 1 16895569 16895569 G A NBPF1 Silent p.G871G 0.09 TCGA-34-2605-01 1 171956921 171956921 A G DNM3 Missense_Mutation p.N121D 0.51 deleterious(0) possibly_damaging(0.863) TCGA-34-2605-01 1 172520699 172520699 C T SUCO Missense_Mutation p.A37V 0.15 tolerated_low_confidence(0.31) benign(0.03) TCGA-34-2605-01 1 17395517 17395517 A G PADI2 3'UTR 0.08 TCGA-34-2605-01 1 175049458 175049458 G T TNN Missense_Mutation p.S315I 0.53 deleterious(0.04) benign(0.183) TCGA-34-2605-01 1 175086194 175086194 G A TNN Missense_Mutation p.D747N 0.64 tolerated(0.06) possibly_damaging(0.9) TCGA-34-2605-01 1 175106100 175106100 G T TNN Missense_Mutation p.V1191F 0.51 deleterious(0) probably_damaging(0.993) TCGA-34-2605-01 1 180905232 180905232 G A KIAA1614 Silent p.L729L 0.51 TCGA-34-2605-01 1 183086694 183086694 G C LAMC1 Missense_Mutation p.L571F 0.08 tolerated(0.2) benign(0.048) TCGA-34-2605-01 1 186158956 186158956 T C HMCN1 Silent p.I5618I 0.11 TCGA-34-2605-01 1 186344124 186344124 C G TPR Missense_Mutation p.E13Q 0.13 benign(0.403) TCGA-34-2605-01 1 190234168 190234168 T C BRINP3 Missense_Mutation p.I149V 0.55 tolerated(0.23) probably_damaging(0.987) TCGA-34-2605-01 1 196920114 196920114 G T CFHR2 Missense_Mutation p.C129F 0.57 deleterious(0) probably_damaging(0.998) TCGA-34-2605-01 1 197073194 197073194 C A ASPM Silent p.R1729R 0.51 TCGA-34-2605-01 1 197073195 197073195 C A ASPM Missense_Mutation p.R1729L 0.51 tolerated(0.06) possibly_damaging(0.734) TCGA-34-2605-01 1 201336914 201336914 C T TNNT2 Missense_Mutation p.A52T 0.52 tolerated(0.55) unknown(0) TCGA-34-2605-01 1 205034375 205034375 C A CNTN2 Nonsense_Mutation p.Y560* 0.44 TCGA-34-2605-01 1 206905794 206905794 C G MAPKAPK2 Intron 0.38 TCGA-34-2605-01 1 207758022 207758022 C A CR1 Silent p.I1777I 0.49 TCGA-34-2605-01 1 207782896 207782896 C A CR1 Missense_Mutation p.P2053Q 0.52 deleterious(0.03) possibly_damaging(0.624) TCGA-34-2605-01 1 213414514 213414514 G C RPS6KC1 Silent p.L565L 0.10 TCGA-34-2605-01 1 214830422 214830422 A G CENPF Missense_Mutation p.K2878E 0.58 benign(0.164) TCGA-34-2605-01 1 216051203 216051203 T C USH2A Missense_Mutation p.K2860E 0.04 probably_damaging(0.998) TCGA-34-2605-01 1 222826606 222826606 G A MIA3 Missense_Mutation p.E1416K 0.06 deleterious(0) benign(0.231) TCGA-34-2605-01 1 231344937 231344937 G T TRIM67 Missense_Mutation p.W688C 0.59 deleterious(0) probably_damaging(0.999) TCGA-34-2605-01 1 23420797 23420797 C T LUZP1 5'UTR 0.46 TCGA-34-2605-01 1 236894556 236894556 C G ACTN2 Missense_Mutation p.N213K 0.66 deleterious(0) probably_damaging(1) TCGA-34-2605-01 1 237802460 237802460 C A RYR2 Silent p.S2358S 0.55 TCGA-34-2605-01 1 237802461 237802461 C A RYR2 Silent p.R2359R 0.57 TCGA-34-2605-01 1 237804207 237804207 G A RYR2 Missense_Mutation p.E2376K 0.09 benign(0.269) TCGA-34-2605-01 1 237865312 237865312 G T RYR2 Silent p.L3134L 0.41 TCGA-34-2605-01 1 237923073 237923073 T C RYR2 Intron 0.56 TCGA-34-2605-01 1 243471314 243471314 G T SDCCAG8 Missense_Mutation p.R255I 0.54 deleterious(0) benign(0.023) TCGA-34-2605-01 1 247024480 247024480 C T AHCTF1 Missense_Mutation p.E1294K 0.14 tolerated(0.11) benign(0.009) TCGA-34-2605-01 1 26189915 26189915 A T PAQR7 Missense_Mutation p.F139Y 0.05 tolerated(0.56) possibly_damaging(0.717) TCGA-34-2605-01 1 32256746 32256746 C A SPOCD1 Missense_Mutation p.V1037F 0.47 deleterious(0) probably_damaging(0.952) TCGA-34-2605-01 1 44085815 44085815 G A PTPRF Missense_Mutation p.E1721K 0.35 deleterious(0) probably_damaging(0.999) TCGA-34-2605-01 1 44467245 44467245 G A SLC6A9 Silent p.F412F 0.58 TCGA-34-2605-01 1 52729530 52729530 C T ZFYVE9 Missense_Mutation p.S755L 0.21 tolerated(0.06) probably_damaging(0.96) TCGA-34-2605-01 1 53699292 53699292 C G MAGOH Silent p.L60L 0.30 TCGA-34-2605-01 1 54060348 54060348 G T GLIS1 Silent p.A76A 0.46 TCGA-34-2605-01 1 67199553 67199553 T A SGIP1 Missense_Mutation p.L674H 0.44 deleterious(0) probably_damaging(0.999) TCGA-34-2605-01 1 68954604 68954604 C T DEPDC1 Silent p.L195L 0.07 TCGA-34-2605-01 1 75596274 75596274 A T LHX8 5'UTR 0.40 TCGA-34-2605-01 1 76349389 76349389 G C MSH4 Missense_Mutation p.A664P 0.53 tolerated(1) benign(0.003) TCGA-34-2605-01 20 21687543 21687543 T A PAX1 Missense_Mutation p.Y252N 0.47 deleterious(0.01) probably_damaging(0.979) TCGA-34-2605-01 20 32212616 32212616 C G CBFA2T2 Missense_Mutation p.P256A 0.03 tolerated(0.55) benign(0.015) TCGA-34-2605-01 20 3657783 3657783 T A ADAM33 Missense_Mutation p.K62M 0.39 tolerated(0.18) benign(0.091) TCGA-34-2605-01 20 43255177 43255177 G A ADA Silent p.G94G 0.32 TCGA-34-2605-01 20 44313528 44313528 C T WFDC10B Missense_Mutation p.E71K 0.29 tolerated(0.05) benign(0.065) TCGA-34-2605-01 20 44472229 44472229 A G ACOT8 Missense_Mutation p.W260R 0.28 deleterious(0.02) probably_damaging(1) TCGA-34-2605-01 20 58491605 58491605 C A SYCP2 Missense_Mutation p.S150I 0.38 deleterious(0.01) possibly_damaging(0.767) TCGA-34-2605-01 21 10921996 10921996 C A TPTE Splice_Site p.X343_splice 0.12 TCGA-34-2605-01 21 11039111 11039111 A G BAGE2 RNA 0.04 TCGA-34-2605-01 21 15352205 15352205 C G ANKRD20A11P RNA 0.22 TCGA-34-2605-01 21 35229099 35229099 T C ITSN1 Missense_Mutation p.Y1241H 0.35 tolerated(0.06) possibly_damaging(0.9) TCGA-34-2605-01 21 37605304 37605304 G C DOPEY2 Missense_Mutation p.Q851H 0.22 deleterious(0.01) probably_damaging(0.928) TCGA-34-2605-01 22 22893428 22893428 C T PRAME Silent p.L35L 0.04 TCGA-34-2605-01 22 24324969 24324969 G T GSTT2 Missense_Mutation p.Q117H 0.40 deleterious(0) benign(0.442) TCGA-34-2605-01 22 29687586 29687586 G T EWSR1 Missense_Mutation p.G342V 0.08 deleterious(0) unknown(0) TCGA-34-2605-01 22 36685248 36685248 C T MYH9 Silent p.S1480S 0.09 TCGA-34-2605-01 22 40066951 40066951 C G CACNA1I Missense_Mutation p.Q1511E 0.17 deleterious(0) benign(0.004) TCGA-34-2605-01 22 41613277 41613277 C T L3MBTL2 Intron 0.31 TCGA-34-2605-01 22 41973287 41973287 C T CSDC2 3'Flank 0.07 TCGA-34-2605-01 22 46652818 46652818 T C PKDREJ Silent p.S2134S 0.34 TCGA-34-2605-01 2 100029310 100029310 G C REV1 Silent p.P685P 0.36 TCGA-34-2605-01 2 112529995 112529995 T A ANAPC1 Missense_Mutation p.Q1881L 0.15 tolerated(0.3) benign(0.021) TCGA-34-2605-01 2 120858302 120858302 G T EPB41L5 Missense_Mutation p.V417L 0.12 tolerated(0.12) benign(0.005) TCGA-34-2605-01 2 131985845 131985845 G T POTEE Nonsense_Mutation p.G316* 0.15 TCGA-34-2605-01 2 131985846 131985846 G T POTEE Missense_Mutation p.G316V 0.14 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-34-2605-01 2 145156223 145156223 A G ZEB2 Missense_Mutation p.L844S 0.32 tolerated(0.21) benign(0.015) TCGA-34-2605-01 2 152226654 152226654 G A TNFAIP6 Missense_Mutation p.R172H 0.05 tolerated(0.13) benign(0.176) TCGA-34-2605-01 2 152552154 152552154 G C NEB Missense_Mutation p.H538D 0.09 benign(0.205) TCGA-34-2605-01 2 166172255 166172255 C G SCN2A Missense_Mutation p.S553C 0.05 deleterious(0.05) benign(0.005) TCGA-34-2605-01 2 171863120 171863120 A G TLK1 Silent p.N544N 0.31 TCGA-34-2605-01 2 179446811 179446811 C T TTN Silent p.R22095R 0.38 TCGA-34-2605-01 2 179565858 179565858 T G TTN Missense_Mutation p.K10224T 0.36 TCGA-34-2605-01 2 179590525 179590525 C G TTN Missense_Mutation p.D6842H 0.08 TCGA-34-2605-01 2 189916171 189916171 C A COL5A2 Missense_Mutation p.G936W 0.34 unknown(0) TCGA-34-2605-01 2 198274706 198274706 C A SF3B1 Missense_Mutation p.R231I 0.04 deleterious(0.01) possibly_damaging(0.474) TCGA-34-2605-01 2 201464453 201464453 A C AOX1 Missense_Mutation p.L140F 0.11 deleterious(0.02) possibly_damaging(0.827) TCGA-34-2605-01 2 207174696 207174696 C T ZDBF2 Missense_Mutation p.P1815L 0.49 tolerated(0.11) possibly_damaging(0.713) TCGA-34-2605-01 2 21235341 21235341 C G APOB Missense_Mutation p.A1467P 0.17 probably_damaging(0.997) TCGA-34-2605-01 2 21247904 21247904 G A APOB Silent p.I779I 0.26 TCGA-34-2605-01 2 219610450 219610450 G T TTLL4 Missense_Mutation p.R608L 0.41 deleterious(0) benign(0.201) TCGA-34-2605-01 2 220047044 220047044 T G FAM134A Missense_Mutation p.L442R 0.11 deleterious(0.03) possibly_damaging(0.678) TCGA-34-2605-01 2 220112400 220112400 G A STK16 Missense_Mutation p.R193Q 0.16 deleterious(0) possibly_damaging(0.872) TCGA-34-2605-01 2 225706597 225706597 G T DOCK10 Missense_Mutation p.A862E 0.35 tolerated(0.06) benign(0.001) TCGA-34-2605-01 2 231110629 231110629 C A SP140 Missense_Mutation p.P239H 0.07 deleterious(0.02) possibly_damaging(0.853) TCGA-34-2605-01 2 235949989 235949989 G A SH3BP4 Silent p.L192L 0.07 TCGA-34-2605-01 2 239010660 239010660 C T ESPNL Missense_Mutation p.H125Y 0.33 tolerated(0.15) benign(0.366) TCGA-34-2605-01 2 37234255 37234255 C G HEATR5B Missense_Mutation p.G1572A 0.14 tolerated(0.5) benign(0.001) TCGA-34-2605-01 2 37398703 37398703 C G SULT6B1 Missense_Mutation p.E181Q 0.12 tolerated(0.11) possibly_damaging(0.653) TCGA-34-2605-01 2 48035160 48035160 C G FBXO11 3'UTR 0.43 TCGA-34-2605-01 2 51253600 51253600 T A NRXN1 Missense_Mutation p.K260N 0.30 tolerated_low_confidence(0.33) benign(0.002) TCGA-34-2605-01 2 51254853 51254853 C A NRXN1 Missense_Mutation p.V187L 0.42 tolerated(1) benign(0.005) TCGA-34-2605-01 2 61181107 61181107 G A PUS10 Missense_Mutation p.S384F 0.42 deleterious(0) probably_damaging(0.987) TCGA-34-2605-01 2 61181110 61181110 G A PUS10 Missense_Mutation p.S383L 0.42 deleterious(0) possibly_damaging(0.571) TCGA-34-2605-01 2 70409029 70409029 C A C2orf42 Missense_Mutation p.R30L 0.31 deleterious(0.01) possibly_damaging(0.538) TCGA-34-2605-01 2 73491609 73491609 C G FBXO41 Missense_Mutation p.E535Q 0.18 tolerated(0.28) benign(0.017) TCGA-34-2605-01 2 99226293 99226293 G C UNC50 Missense_Mutation p.R24T 0.18 tolerated(0.18) possibly_damaging(0.796) TCGA-34-2605-01 3 10311935 10311935 G A TATDN2 Missense_Mutation p.V357I 0.03 tolerated(0.38) benign(0.026) TCGA-34-2605-01 3 10392215 10392215 C A ATP2B2 Missense_Mutation p.R728L 0.53 deleterious(0.01) benign(0.256) TCGA-34-2605-01 3 107097384 107097384 T A CCDC54 Missense_Mutation p.F317Y 0.16 deleterious(0.01) benign(0.271) TCGA-34-2605-01 3 108100312 108100312 C A MYH15 3'UTR 0.08 TCGA-34-2605-01 3 108100313 108100313 C A MYH15 3'UTR 0.08 TCGA-34-2605-01 3 108100363 108100363 C A MYH15 3'UTR 0.10 TCGA-34-2605-01 3 108366952 108366952 T A DZIP3 Missense_Mutation p.L652H 0.04 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-34-2605-01 3 112063952 112063952 G C CD200 Missense_Mutation p.E105Q 0.08 tolerated(0.2) benign(0.023) TCGA-34-2605-01 3 119101996 119101996 A T ARHGAP31 Missense_Mutation p.Q202L 0.49 deleterious(0.03) probably_damaging(0.989) TCGA-34-2605-01 3 119301121 119301121 G A ADPRH Silent p.R35R 0.50 TCGA-34-2605-01 3 119887052 119887052 C A GPR156 Silent p.G424G 0.07 TCGA-34-2605-01 3 1262389 1262389 G A CNTN6 Missense_Mutation p.R25H 0.06 deleterious(0.02) benign(0.002) TCGA-34-2605-01 3 130189797 130189797 A T COL6A5 Silent p.T2520T 0.23 TCGA-34-2605-01 3 130893753 130893753 A C NEK11 Intron 0.38 TCGA-34-2605-01 3 137483960 137483960 G T SOX14 Missense_Mutation p.V112L 0.14 tolerated(0.5) benign(0.004) TCGA-34-2605-01 3 138763031 138763031 A G PRR23C Silent p.S144S 0.13 TCGA-34-2605-01 3 151107811 151107811 G A MED12L Silent p.S1797S 0.40 TCGA-34-2605-01 3 155547485 155547485 C G SLC33A1 Missense_Mutation p.A492P 0.12 tolerated(0.21) benign(0.315) TCGA-34-2605-01 3 160018772 160018772 G A IFT80 Missense_Mutation p.S405L 0.05 deleterious(0.04) benign(0.219) TCGA-34-2605-01 3 164709161 164709161 T A SI Silent p.P1696P 0.08 TCGA-34-2605-01 3 165504089 165504089 C T BCHE Missense_Mutation p.E510K 0.12 tolerated(0.84) benign(0) TCGA-34-2605-01 3 168812864 168812864 C G MECOM Missense_Mutation p.G884R 0.03 deleterious(0) possibly_damaging(0.898) TCGA-34-2605-01 3 169899515 169899515 C T PHC3 5'UTR 0.07 TCGA-34-2605-01 3 170244802 170244802 C T SLC7A14 5'UTR 0.15 TCGA-34-2605-01 3 172835152 172835152 C T SPATA16 Missense_Mutation p.E124K 0.02 deleterious(0) possibly_damaging(0.486) TCGA-34-2605-01 3 179298691 179298691 A C ACTL6A Silent p.A280A 0.10 TCGA-34-2605-01 3 184633191 184633191 G T VPS8 Nonsense_Mutation p.E771* 0.31 TCGA-34-2605-01 3 186257152 186257152 C G CRYGS Missense_Mutation p.V86L 0.12 deleterious(0.04) benign(0.011) TCGA-34-2605-01 3 186358895 186358895 G A FETUB Nonsense_Mutation p.W101* 0.50 TCGA-34-2605-01 3 186358896 186358896 G T FETUB Missense_Mutation p.W101C 0.50 deleterious(0) probably_damaging(0.994) TCGA-34-2605-01 3 186364088 186364088 T A FETUB Missense_Mutation p.C216S 0.06 deleterious(0) probably_damaging(0.997) TCGA-34-2605-01 3 192078239 192078239 G A FGF12 Silent p.T96T 0.15 TCGA-34-2605-01 3 196387126 196387126 G T NRROS Silent p.L204L 0.16 TCGA-34-2605-01 3 196876628 196876628 C G DLG1 Missense_Mutation p.E208Q 0.06 deleterious(0.02) benign(0.283) TCGA-34-2605-01 3 42740622 42740622 C T HHATL Missense_Mutation p.E64K 0.36 deleterious(0) probably_damaging(0.999) TCGA-34-2605-01 3 49713615 49713618 AGAT - APEH Frame_Shift_Del p.I191Pfs*3 0.18 TCGA-34-2605-01 3 50220993 50220993 G T SEMA3F Missense_Mutation p.G410V 0.42 deleterious(0) probably_damaging(1) TCGA-34-2605-01 3 52954660 52954660 T A SFMBT1 Missense_Mutation p.K422M 0.50 deleterious(0.01) probably_damaging(0.961) TCGA-34-2605-01 3 62467466 62467466 G T CADPS Silent p.I1035I 0.51 TCGA-34-2605-01 3 71050212 71050212 T C FOXP1 Splice_Site p.X327_splice 0.39 TCGA-34-2605-01 3 72971393 72971393 G C GXYLT2 Missense_Mutation p.E169D 0.49 tolerated(0.55) benign(0.015) TCGA-34-2605-01 3 85961641 85961641 C A CADM2 Missense_Mutation p.H209Q 0.37 deleterious(0) probably_damaging(0.997) TCGA-34-2605-01 3 8932127 8932127 G A RAD18 Missense_Mutation p.S444L 0.29 deleterious(0) probably_damaging(0.999) TCGA-34-2605-01 3 97852252 97852252 C A OR5H1 Silent p.A237A 0.24 TCGA-34-2605-01 4 115997237 115997237 C A NDST4 Missense_Mutation p.R319M 0.38 deleterious(0) probably_damaging(0.993) TCGA-34-2605-01 4 122063895 122063895 T A TNIP3 Nonsense_Mutation p.K335* 0.34 TCGA-34-2605-01 4 123258167 123258167 C T KIAA1109 Nonsense_Mutation p.R4048* 0.18 TCGA-34-2605-01 4 123265682 123265682 A T KIAA1109 Silent p.A4233A 0.35 TCGA-34-2605-01 4 126370766 126370766 C G FAT4 Missense_Mutation p.I2865M 0.16 possibly_damaging(0.522) TCGA-34-2605-01 4 164394344 164394344 C A TKTL2 Silent p.A181A 0.41 TCGA-34-2605-01 4 173269728 173269728 A G GALNTL6 Silent p.P147P 0.27 TCGA-34-2605-01 4 175898399 175898399 C A ADAM29 Missense_Mutation p.R575S 0.24 tolerated(0.16) benign(0.18) TCGA-34-2605-01 4 177241258 177241258 C T SPCS3 Silent p.L11L 0.23 TCGA-34-2605-01 4 177608586 177608586 C A VEGFC Silent p.R300R 0.19 TCGA-34-2605-01 4 183676059 183676059 T C TENM3 Silent p.V1513V 0.16 TCGA-34-2605-01 4 185646175 185646175 C G CENPU Missense_Mutation p.E86Q 0.14 deleterious(0.04) possibly_damaging(0.894) TCGA-34-2605-01 4 46264073 46264073 G T GABRA2 Missense_Mutation p.A310E 0.53 deleterious(0) probably_damaging(0.982) TCGA-34-2605-01 4 47765553 47765553 C A CORIN Missense_Mutation p.A154S 0.46 tolerated(0.4) benign(0.003) TCGA-34-2605-01 4 54966515 54966515 T C GSX2 Missense_Mutation p.S2P 0.57 tolerated(0.37) probably_damaging(0.986) TCGA-34-2605-01 4 57786030 57786030 C - REST Frame_Shift_Del p.H326Ifs*22 0.23 TCGA-34-2605-01 4 65170957 65170957 C G TECRL Splice_Site p.X220_splice 0.36 TCGA-34-2605-01 4 66201781 66201781 G C EPHA5 Silent p.L907L 0.30 TCGA-34-2605-01 4 70146568 70146568 G T UGT2B28 Missense_Mutation p.W117L 0.37 tolerated(0.72) benign(0.008) TCGA-34-2605-01 4 77288675 77288675 T C CCDC158 Silent p.Q534Q 0.37 TCGA-34-2605-01 5 101748731 101748731 G C SLCO6A1 Missense_Mutation p.A530G 0.41 deleterious(0.04) probably_damaging(0.997) TCGA-34-2605-01 5 102433107 102433107 C A GIN1 Missense_Mutation p.G307C 0.32 tolerated(0.06) benign(0.008) TCGA-34-2605-01 5 127636618 127636618 C G FBN2 Missense_Mutation p.E2019D 0.41 deleterious(0) probably_damaging(0.991) TCGA-34-2605-01 5 128302216 128302216 G T SLC27A6 Missense_Mutation p.G129V 0.50 deleterious(0) probably_damaging(1) TCGA-34-2605-01 5 128430575 128430575 C T ISOC1 Missense_Mutation p.S39L 0.60 deleterious_low_confidence(0) possibly_damaging(0.602) TCGA-34-2605-01 5 128932265 128932265 G A ADAMTS19 Silent p.L456L 0.04 TCGA-34-2605-01 5 138209209 138209209 T C LRRTM2 Silent p.G347G 0.43 TCGA-34-2605-01 5 140202980 140202980 C G PCDHA5 Silent p.G540G 0.48 TCGA-34-2605-01 5 140558783 140558783 C A PCDHB8 Missense_Mutation p.L390I 0.24 tolerated_low_confidence(0.05) benign(0.157) TCGA-34-2605-01 5 141007477 141007477 G A HDAC3 Silent p.L271L 0.24 TCGA-34-2605-01 5 146017814 146017814 A G PPP2R2B Missense_Mutation p.F267L 0.43 tolerated(1) benign(0.001) TCGA-34-2605-01 5 178506572 178506572 G C ZNF354C Missense_Mutation p.G380A 0.15 deleterious(0) probably_damaging(0.926) TCGA-34-2605-01 5 180626930 180626930 C A TRIM7 Missense_Mutation p.G257V 0.49 tolerated(0.13) benign(0.013) TCGA-34-2605-01 5 24593636 24593636 G A CDH10 5'UTR 0.70 TCGA-34-2605-01 5 26903926 26903926 A G CDH9 Silent p.Y273Y 0.66 TCGA-34-2605-01 5 39377322 39377322 G C DAB2 Missense_Mutation p.Q523E 0.06 tolerated(0.08) benign(0.321) TCGA-34-2605-01 5 41019002 41019002 C A MROH2B Missense_Mutation p.D854Y 0.58 deleterious(0) possibly_damaging(0.8) TCGA-34-2605-01 5 41019003 41019003 C A MROH2B Missense_Mutation p.K853N 0.57 tolerated(0.14) benign(0.005) TCGA-34-2605-01 5 43659419 43659419 G A NNT Silent p.S867S 0.23 TCGA-34-2605-01 5 45262620 45262620 G A HCN1 Silent p.A692A 0.12 TCGA-34-2605-01 5 45262621 45262621 G T HCN1 Missense_Mutation p.A692D 0.11 deleterious_low_confidence(0.05) benign(0.159) TCGA-34-2605-01 5 5319172 5319172 T A ADAMTS16 Missense_Mutation p.L1199Q 0.10 deleterious(0) probably_damaging(1) TCGA-34-2605-01 5 58476452 58476452 G T PDE4D Missense_Mutation p.N259K 0.30 tolerated_low_confidence(0.27) benign(0.015) TCGA-34-2605-01 5 66478783 66478783 T G CD180 Missense_Mutation p.I630L 0.08 tolerated(0.49) benign(0) TCGA-34-2605-01 5 74638579 74638579 G T HMGCR Missense_Mutation p.C50F 0.54 deleterious(0) probably_damaging(0.99) TCGA-34-2605-01 5 95067630 95067630 C A RHOBTB3 Missense_Mutation p.L24I 0.44 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-34-2605-01 6 10907802 10907802 A C SYCP2L Missense_Mutation p.E235A 0.53 deleterious(0) probably_damaging(1) TCGA-34-2605-01 6 109481867 109481867 A G CEP57L1 Missense_Mutation p.K370R 0.38 tolerated(0.37) benign(0.327) TCGA-34-2605-01 6 109871353 109871353 C G AK9 Missense_Mutation p.E968D 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-34-2605-01 6 123318833 123318833 G C CLVS2 5'UTR 0.16 TCGA-34-2605-01 6 127517160 127517160 C A RSPO3 3'UTR 0.32 TCGA-34-2605-01 6 132207707 132207707 G C ENPP1 Missense_Mutation p.R817T 0.21 tolerated(0.59) benign(0.004) TCGA-34-2605-01 6 139694176 139694176 G A CITED2 3'UTR 0.21 TCGA-34-2605-01 6 144761529 144761530 - TCA UTRN In_Frame_Ins p.S479dup 0.39 TCGA-34-2605-01 6 152472720 152472720 A T SYNE1 Missense_Mutation p.C8140S 0.21 possibly_damaging(0.557) TCGA-34-2605-01 6 152652638 152652638 C T SYNE1 Silent p.L4394L 0.45 TCGA-34-2605-01 6 160169447 160169447 C G WTAP Intron 0.07 TCGA-34-2605-01 6 163736051 163736051 G T PACRG 3'UTR 0.14 TCGA-34-2605-01 6 25769228 25769228 G T SLC17A4 Missense_Mutation p.R36L 0.51 deleterious(0) probably_damaging(0.912) TCGA-34-2605-01 6 27782996 27782996 G C HIST1H2BM Missense_Mutation p.A59P 0.03 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-34-2605-01 6 31431740 31431740 C T HCP5 RNA 0.29 TCGA-34-2605-01 6 31868701 31868701 C A ZBTB12 Nonsense_Mutation p.E128* 0.31 TCGA-34-2605-01 6 31996775 31996775 C T C4B Silent p.I1147I 0.21 TCGA-34-2605-01 6 32024445 32024445 C T TNXB Silent p.E2687E 0.58 TCGA-34-2605-01 6 33626525 33626525 G A ITPR3 Missense_Mutation p.V150M 0.55 deleterious(0.01) probably_damaging(0.996) TCGA-34-2605-01 6 38142775 38142775 G A BTBD9 Missense_Mutation p.R609W 0.03 deleterious_low_confidence(0.02) possibly_damaging(0.689) TCGA-34-2605-01 6 47681534 47681534 A G GPR115 Missense_Mutation p.S185G 0.31 deleterious(0.03) benign(0.012) TCGA-34-2605-01 6 49667575 49667575 G T CRISP2 Silent p.A71A 0.06 TCGA-34-2605-01 6 49667576 49667576 G T CRISP2 Missense_Mutation p.A71D 0.05 deleterious(0) probably_damaging(1) TCGA-34-2605-01 6 49754504 49754504 G A PGK2 Nonsense_Mutation p.Q133* 0.25 TCGA-34-2605-01 6 51890289 51890289 G T PKHD1 Missense_Mutation p.T1440N 0.22 deleterious(0.03) possibly_damaging(0.868) TCGA-34-2605-01 6 54805591 54805591 G T FAM83B Missense_Mutation p.A608S 0.55 tolerated(0.31) benign(0.003) TCGA-34-2605-01 6 55739522 55739522 T G BMP5 Silent p.R48R 0.15 TCGA-34-2605-01 6 56031733 56031733 G A COL21A1 Missense_Mutation p.R417W 0.50 deleterious(0) probably_damaging(0.999) TCGA-34-2605-01 6 70071101 70071101 C T BAI3 Silent p.P1312P 0.22 TCGA-34-2605-01 6 74063949 74063949 C G DPPA5 5'UTR 0.18 TCGA-34-2605-01 6 74520792 74520792 C T CD109 Silent p.T1208T 0.28 TCGA-34-2605-01 6 85472408 85472408 G T TBX18 Silent p.S117S 0.35 TCGA-34-2605-01 6 85472409 85472409 G T TBX18 Missense_Mutation p.S117Y 0.35 deleterious(0.01) possibly_damaging(0.462) TCGA-34-2605-01 6 90641953 90641953 C A BACH2 3'UTR 0.36 TCGA-34-2605-01 6 93955063 93955063 C T EPHA7 Silent p.T945T 0.43 TCGA-34-2605-01 7 100680768 100680768 C T MUC17 Missense_Mutation p.S2024L 0.15 unknown(0) TCGA-34-2605-01 7 100841564 100841564 C A MOGAT3 Silent p.G192G 0.31 TCGA-34-2605-01 7 1026302 1026302 C G CYP2W1 Missense_Mutation p.H230D 0.05 deleterious(0) probably_damaging(0.955) TCGA-34-2605-01 7 103290800 103290800 G T RELN Missense_Mutation p.N641K 0.34 tolerated(0.74) benign(0.373) TCGA-34-2605-01 7 119914868 119914868 G A KCND2 Missense_Mutation p.R61H 0.04 deleterious(0.03) probably_damaging(0.953) TCGA-34-2605-01 7 120969787 120969787 G C WNT16 Missense_Mutation p.E88Q 0.10 tolerated(0.1) probably_damaging(0.999) TCGA-34-2605-01 7 120969831 120969831 G A WNT16 Silent p.P102P 0.17 TCGA-34-2605-01 7 139092007 139092007 C A LUC7L2 Missense_Mutation p.H266N 0.20 tolerated(0.15) probably_damaging(0.992) TCGA-34-2605-01 7 141955392 141955392 G A PRSS58 Missense_Mutation p.P48S 0.33 tolerated(0.57) probably_damaging(1) TCGA-34-2605-01 7 141955393 141955393 G T PRSS58 Missense_Mutation p.H47Q 0.34 deleterious(0.04) probably_damaging(0.968) TCGA-34-2605-01 7 142124405 142124405 G C TRBV6-8 Missense_Mutation p.Q25E 0.04 deleterious(0) probably_damaging(0.993) TCGA-34-2605-01 7 143657108 143657108 C A OR2F1 Silent p.L15L 0.24 TCGA-34-2605-01 7 147914549 147914549 G A CNTNAP2 Silent p.A1060A 0.35 TCGA-34-2605-01 7 150027461 150027461 G T ZBED6CL 5'UTR 0.39 TCGA-34-2605-01 7 150217630 150217630 G C GIMAP7 Missense_Mutation p.E190Q 0.25 deleterious(0.03) possibly_damaging(0.777) TCGA-34-2605-01 7 154684448 154684448 C A DPP6 3'UTR 0.47 TCGA-34-2605-01 7 157985188 157985188 C T PTPRN2 Splice_Site p.X127_splice 0.18 TCGA-34-2605-01 7 18801779 18801779 G A HDAC9 Splice_Site p.X682_splice 0.26 TCGA-34-2605-01 7 22766803 22766803 G A IL6 5'UTR 0.43 TCGA-34-2605-01 7 2946398 2946398 C A CARD11 Silent p.L1113L 0.29 TCGA-34-2605-01 7 35673995 35673995 T A HERPUD2 Missense_Mutation p.Q329L 0.42 tolerated(0.89) benign(0.003) TCGA-34-2605-01 7 38369981 38369981 C A TRGV8 Missense_Mutation p.R106L 0.42 deleterious(0.01) benign(0.037) TCGA-34-2605-01 7 38505777 38505777 G T AMPH Missense_Mutation p.A221E 0.33 deleterious(0) probably_damaging(0.982) TCGA-34-2605-01 7 40277237 40277237 A G SUGCT Missense_Mutation p.Y170C 0.35 deleterious(0) probably_damaging(0.967) TCGA-34-2605-01 7 47698542 47698542 T C C7orf65 Missense_Mutation p.F58L 0.28 tolerated_low_confidence(0.53) benign(0.294) TCGA-34-2605-01 7 50672047 50672047 C A GRB10 Missense_Mutation p.G473C 0.39 deleterious(0.01) benign(0.15) TCGA-34-2605-01 7 50673084 50673084 G C GRB10 Missense_Mutation p.S431C 0.33 deleterious(0.01) possibly_damaging(0.621) TCGA-34-2605-01 7 51094302 51094302 C A COBL Nonsense_Mutation p.E1149* 0.30 TCGA-34-2605-01 7 6077060 6077060 G T EIF2AK1 Missense_Mutation p.L443M 0.08 deleterious(0) probably_damaging(0.998) TCGA-34-2605-01 7 77423362 77423362 A G TMEM60 Missense_Mutation p.F110S 0.37 deleterious(0.02) probably_damaging(0.91) TCGA-34-2605-01 7 79833022 79833022 A C GNAI1 Missense_Mutation p.Y155S 0.25 deleterious(0) probably_damaging(0.993) TCGA-34-2605-01 7 91713973 91713973 T C AKAP9 Missense_Mutation p.L2889P 0.06 possibly_damaging(0.794) TCGA-34-2605-01 7 91726184 91726184 C A AKAP9 Missense_Mutation p.S3304Y 0.37 probably_damaging(0.999) TCGA-34-2605-01 7 92300841 92300841 C A CDK6 Silent p.T182T 0.36 TCGA-34-2605-01 7 97498327 97498327 G C ASNS Missense_Mutation p.H48D 0.06 deleterious(0.01) probably_damaging(1) TCGA-34-2605-01 8 100493915 100493915 C T VPS13B Missense_Mutation p.S1252F 0.04 tolerated(0.55) benign(0) TCGA-34-2605-01 8 101534863 101534863 C A ANKRD46 Missense_Mutation p.A203S 0.50 deleterious_low_confidence(0) benign(0.364) TCGA-34-2605-01 8 125081709 125081710 TC - FER1L6 Frame_Shift_Del p.L1277Afs*4 0.36 TCGA-34-2605-01 8 139160922 139160922 G T FAM135B Missense_Mutation p.Q1097K 0.52 tolerated(0.25) benign(0.298) TCGA-34-2605-01 8 22926491 22926491 G A TNFRSF10B 5'UTR 0.51 TCGA-34-2605-01 8 24324409 24324409 C - ADAM7 Frame_Shift_Del p.P163Rfs*30 0.40 TCGA-34-2605-01 8 27516360 27516360 T A SCARA3 Missense_Mutation p.F225I 0.08 tolerated(0.28) probably_damaging(0.918) TCGA-34-2605-01 8 29005120 29005120 C G KIF13B Splice_Site p.X605_splice 0.41 TCGA-34-2605-01 8 3889610 3889610 G T CSMD1 Missense_Mutation p.H143N 0.57 probably_damaging(0.995) TCGA-34-2605-01 8 3889611 3889611 G T CSMD1 Missense_Mutation p.S142R 0.55 probably_damaging(0.998) TCGA-34-2605-01 8 52366201 52366201 T C PXDNL Missense_Mutation p.H376R 0.64 tolerated(0.36) benign(0.006) TCGA-34-2605-01 8 57224838 57224838 C G SDR16C5 Missense_Mutation p.E115Q 0.58 deleterious(0) probably_damaging(0.999) TCGA-34-2605-01 8 59329505 59329505 C A UBXN2B Missense_Mutation p.P61T 0.45 tolerated(0.1) benign(0.118) TCGA-34-2605-01 8 67578930 67578930 C T VCPIP1 Silent p.V88V 0.61 TCGA-34-2605-01 8 71057034 71057034 C T NCOA2 Silent p.Q885Q 0.60 TCGA-34-2605-01 8 72987566 72987566 C T TRPA1 Missense_Mutation p.D27N 0.57 tolerated(0.29) benign(0.001) TCGA-34-2605-01 8 77766674 77766674 A T ZFHX4 Missense_Mutation p.E2506V 0.61 probably_damaging(0.985) TCGA-34-2605-01 8 85097127 85097127 C A RALYL 5'UTR 0.22 TCGA-34-2605-01 9 100245473 100245473 C A TDRD7 Missense_Mutation p.P919T 0.06 tolerated(0.16) benign(0.089) TCGA-34-2605-01 9 100413626 100413637 AAGATCCCCTTG - NCBP1 In_Frame_Del p.K344_L347del 0.18 TCGA-34-2605-01 9 123367618 123367618 G A MEGF9 Silent p.I553I 0.11 TCGA-34-2605-01 9 125273314 125273314 C A OR1J2 Silent p.V78V 0.50 TCGA-34-2605-01 9 125273315 125273315 C T OR1J2 Missense_Mutation p.P79S 0.50 deleterious_low_confidence(0.01) possibly_damaging(0.45) TCGA-34-2605-01 9 125330229 125330229 G T OR1L8 Missense_Mutation p.H176Q 0.46 tolerated(0.42) benign(0.084) TCGA-34-2605-01 9 125377312 125377312 C T OR1Q1 Missense_Mutation p.A99V 0.51 tolerated(0.12) benign(0.003) TCGA-34-2605-01 9 131589343 131589343 G A C9orf114 Silent p.I112I 0.12 TCGA-34-2605-01 9 132585004 132585004 C A TOR1A Silent p.L100L 0.56 TCGA-34-2605-01 9 14841495 14841495 G A FREM1 Nonsense_Mutation p.Q611* 0.49 TCGA-34-2605-01 9 21216926 21216926 C A IFNA16 Missense_Mutation p.V127F 0.49 deleterious(0.01) possibly_damaging(0.543) TCGA-34-2605-01 9 21216927 21216927 C A IFNA16 Missense_Mutation p.E126D 0.49 tolerated(0.1) benign(0.068) TCGA-34-2605-01 9 2639948 2639948 G A VLDLR Missense_Mutation p.E98K 0.07 tolerated(0.39) possibly_damaging(0.835) TCGA-34-2605-01 9 32635645 32635645 C A TAF1L 5'UTR 0.33 TCGA-34-2605-01 9 37842104 37842104 G A DCAF10 Silent p.L224L 0.05 TCGA-34-2605-01 9 73168215 73168215 G A TRPM3 Nonsense_Mutation p.Q1067* 0.14 TCGA-34-2605-01 9 99296396 99296396 C G CDC14B Missense_Mutation p.K253N 0.07 deleterious(0) probably_damaging(0.984) TCGA-34-2605-01 X 110489914 110489914 C T CAPN6 Missense_Mutation p.R606H 0.73 deleterious(0.03) benign(0) TCGA-34-2605-01 X 115303922 115303922 C A AGTR2 Missense_Mutation p.A130E 0.58 deleterious(0) probably_damaging(1) TCGA-34-2605-01 X 118243105 118243105 A C KIAA1210 Silent p.P237P 0.72 TCGA-34-2605-01 X 119243249 119243249 C T RHOXF1 Silent p.K152K 0.70 TCGA-34-2605-01 X 130409256 130409256 T G IGSF1 Missense_Mutation p.L1068F 0.08 tolerated(0.07) probably_damaging(0.999) TCGA-34-2605-01 X 138727751 138727751 G C MCF2 Silent p.L69L 0.22 TCGA-34-2605-01 X 155004409 155004409 C A SPRY3 3'UTR 0.10 TCGA-34-2605-01 X 1720179 1720179 G T AKAP17A Missense_Mutation p.G594W 0.17 deleterious_low_confidence(0.02) unknown(0) TCGA-34-2605-01 X 27999214 27999214 C T DCAF8L1 Missense_Mutation p.E80K 0.16 tolerated_low_confidence(0.06) benign(0.001) TCGA-34-2605-01 X 35938033 35938033 G C CXorf22 Missense_Mutation p.Q39H 0.41 tolerated(0.06) benign(0.052) TCGA-34-2605-01 X 50659227 50659227 C G BMP15 Missense_Mutation p.R267G 0.55 tolerated(0.06) possibly_damaging(0.77) TCGA-34-2605-01 X 54956506 54956506 G A TRO Missense_Mutation p.A1117T 0.63 tolerated(0.96) benign(0.023) TCGA-34-2605-01 X 591803 591803 G T SHOX Missense_Mutation p.Q57H 0.15 tolerated_low_confidence(0.09) benign(0.002) TCGA-34-2605-01 X 65253670 65253670 G T VSIG4 Missense_Mutation p.R20S 0.66 tolerated(0.35) benign(0.006) TCGA-34-2605-01 X 83129631 83129631 G T CYLC1 Missense_Mutation p.A639S 0.72 deleterious(0) probably_damaging(0.941) TCGA-34-2605-01 X 86921612 86921612 A G KLHL4 Intron 0.39 TCGA-34-2605-01 X 90691254 90691254 G C PABPC5 Missense_Mutation p.E226D 0.54 tolerated(0.15) possibly_damaging(0.484) TCGA-34-2608-01 10 111667494 111667494 G A XPNPEP1 Silent p.T67T 0.09 TCGA-34-2608-01 10 17032472 17032472 C A CUBN Missense_Mutation p.S1404I 0.09 deleterious(0) probably_damaging(0.995) TCGA-34-2608-01 10 25887797 25887797 T C GPR158 Missense_Mutation p.I1081T 0.13 tolerated(0.6) benign(0.012) TCGA-34-2608-01 10 31138498 31138498 T C ZNF438 Missense_Mutation p.N279S 0.03 tolerated(1) benign(0.003) TCGA-34-2608-01 10 45602502 45602502 T A RSU1P2 RNA 0.14 TCGA-34-2608-01 10 68280441 68280441 G C CTNNA3 Missense_Mutation p.H489D 0.15 deleterious(0) possibly_damaging(0.537) TCGA-34-2608-01 10 860955 860992 GGCTCTCTGGAGACCACTACAGGAAGGGTGTTCACGCT - LARP4B Frame_Shift_Del p.S572Lfs*24 0.18 TCGA-34-2608-01 10 93390049 93390049 T C PPP1R3C Missense_Mutation p.T197A 0.14 tolerated(0.16) benign(0.03) TCGA-34-2608-01 10 96702109 96702109 C T CYP2C9 Intron 0.07 TCGA-34-2608-01 11 116661354 116661354 G A APOA5 Silent p.S197S 0.14 TCGA-34-2608-01 11 31477910 31477911 - T IMMP1L Frame_Shift_Ins p.S73Kfs*4 0.09 TCGA-34-2608-01 11 32118819 32118819 T C RCN1 Silent p.D128D 0.16 TCGA-34-2608-01 11 47290247 47290247 A T NR1H3 Nonstop_Mutation p.*448Cext*27 0.09 TCGA-34-2608-01 11 55111021 55111021 G T OR4A16 Silent p.V115V 0.02 TCGA-34-2608-01 11 55339883 55339883 G A OR4C16 Missense_Mutation p.E94K 0.11 tolerated(0.12) possibly_damaging(0.711) TCGA-34-2608-01 11 57995510 57995510 C T OR10Q1 Missense_Mutation p.A280T 0.09 deleterious(0) probably_damaging(0.974) TCGA-34-2608-01 11 58384221 58384221 C G ZFP91 Missense_Mutation p.R379G 0.05 deleterious(0.01) probably_damaging(0.949) TCGA-34-2608-01 11 6412896 6412896 A G SMPD1 Missense_Mutation p.S201G 0.12 tolerated(0.33) possibly_damaging(0.66) TCGA-34-2608-01 11 64517934 64517934 A G PYGM Silent p.N697N 0.14 TCGA-34-2608-01 11 64606676 64606676 C T CDC42BPG Silent p.P235P 0.08 TCGA-34-2608-01 11 65485951 65485951 G A RNASEH2C 3'UTR 0.04 TCGA-34-2608-01 11 66189957 66189957 C A NPAS4 Missense_Mutation p.D121E 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-34-2608-01 11 69458669 69458669 G A CCND1 Missense_Mutation p.E162K 0.12 tolerated(0.08) possibly_damaging(0.665) TCGA-34-2608-01 11 92614037 92614037 C A FAT3 Missense_Mutation p.L4090I 0.14 benign(0.184) TCGA-34-2608-01 12 10217439 10217439 C T CLEC9A Missense_Mutation p.P194S 0.10 deleterious(0.04) probably_damaging(0.977) TCGA-34-2608-01 12 106890610 106890610 C T POLR3B Silent p.G966G 0.10 TCGA-34-2608-01 12 109921676 109921676 G A UBE3B Missense_Mutation p.D58N 0.11 deleterious(0.02) benign(0.063) TCGA-34-2608-01 12 12274355 12274355 C A LRP6 Splice_Site p.X1516_splice 0.03 TCGA-34-2608-01 12 45209854 45209854 T C NELL2 Missense_Mutation p.K134E 0.14 deleterious(0.02) probably_damaging(0.987) TCGA-34-2608-01 12 49391375 49391375 C T DDN Silent p.E428E 0.18 TCGA-34-2608-01 12 7303566 7303566 C G CLSTN3 Missense_Mutation p.H812D 0.14 deleterious(0) possibly_damaging(0.512) TCGA-34-2608-01 12 89992485 89992485 G A ATP2B1 Intron 0.13 TCGA-34-2608-01 12 91546946 91546946 C T DCN Missense_Mutation p.E225K 0.06 deleterious(0) possibly_damaging(0.763) TCGA-34-2608-01 13 101833664 101833664 A T NALCN Intron 0.09 TCGA-34-2608-01 13 25671432 25671432 G T PABPC3 Missense_Mutation p.A366S 0.10 tolerated(0.11) possibly_damaging(0.487) TCGA-34-2608-01 13 25744058 25744058 G T AMER2 Missense_Mutation p.A567E 0.05 tolerated(0.31) possibly_damaging(0.902) TCGA-34-2608-01 13 28919626 28919626 G T FLT1 Missense_Mutation p.L771I 0.07 deleterious(0.02) probably_damaging(0.997) TCGA-34-2608-01 13 43934113 43934113 C T ENOX1 Missense_Mutation p.E155K 0.03 deleterious(0) possibly_damaging(0.515) TCGA-34-2608-01 13 60590068 60590068 T C DIAPH3 Silent p.L250L 0.04 TCGA-34-2608-01 13 88330550 88330550 A G SLITRK5 3'UTR 0.10 TCGA-34-2608-01 14 104641909 104641909 C T KIF26A Silent p.S928S 0.16 TCGA-34-2608-01 14 21469520 21469520 G T SLC39A2 Missense_Mutation p.G238C 0.16 deleterious(0) probably_damaging(1) TCGA-34-2608-01 14 66028290 66028290 A G FUT8 Silent p.P3P 0.11 TCGA-34-2608-01 14 74390097 74390097 G C ZNF410 Splice_Site p.X441_splice 0.06 TCGA-34-2608-01 14 80668659 80668659 G C DIO2 3'Flank 0.12 TCGA-34-2608-01 14 92441552 92441552 C - TRIP11 Frame_Shift_Del p.S1808Afs*25 0.17 TCGA-34-2608-01 15 25448259 25448259 C A SNORD115-20 5'Flank 0.12 TCGA-34-2608-01 15 33993204 33993204 C A RYR3 Missense_Mutation p.P2136T 0.17 probably_damaging(1) TCGA-34-2608-01 15 34531356 34531356 T C SLC12A6 Missense_Mutation p.I814M 0.14 tolerated(0.14) benign(0.027) TCGA-34-2608-01 15 53907738 53907738 C A WDR72 Nonsense_Mutation p.E889* 0.09 TCGA-34-2608-01 15 63046061 63046061 G T TLN2 Missense_Mutation p.Q1474H 0.11 deleterious(0.03) benign(0.012) TCGA-34-2608-01 15 74738333 74738333 G A UBL7 3'UTR 0.17 TCGA-34-2608-01 15 78783002 78783002 T C IREB2 Silent p.H741H 0.16 TCGA-34-2608-01 15 81637158 81637158 G T TMC3 Missense_Mutation p.S489R 0.16 tolerated(0.2) benign(0.002) TCGA-34-2608-01 16 2636802 2636802 C T PDPK1 Silent p.H417H 0.06 TCGA-34-2608-01 16 4747368 4747368 G A ANKS3 Silent p.L620L 0.12 TCGA-34-2608-01 16 50258853 50258853 T A PAPD5 Missense_Mutation p.D505E 0.10 tolerated(0.84) benign(0.001) TCGA-34-2608-01 16 61858915 61858915 C T CDH8 Splice_Site p.X279_splice 0.07 TCGA-34-2608-01 16 632882 632882 G T PIGQ Splice_Site p.X511_splice 0.12 TCGA-34-2608-01 16 67281231 67281231 G C SLC9A5 5'Flank 0.09 TCGA-34-2608-01 16 7726840 7726840 G T RBFOX1 Missense_Mutation p.S353I 0.04 deleterious(0) possibly_damaging(0.828) TCGA-34-2608-01 16 81077572 81077572 C G ATMIN Missense_Mutation p.S490C 0.14 deleterious(0.04) benign(0.077) TCGA-34-2608-01 17 27959688 27959688 C G SSH2 Missense_Mutation p.E815Q 0.13 deleterious_low_confidence(0) possibly_damaging(0.756) TCGA-34-2608-01 17 33310101 33310101 A G LIG3 Missense_Mutation p.K26R 0.11 tolerated_low_confidence(0.43) benign(0.001) TCGA-34-2608-01 17 33904306 33904306 G C PEX12 Missense_Mutation p.S144C 0.05 deleterious(0.01) probably_damaging(0.963) TCGA-34-2608-01 17 38953217 38953217 C A KRT28 Missense_Mutation p.R310M 0.14 deleterious(0) possibly_damaging(0.838) TCGA-34-2608-01 17 41570101 41570101 C T DHX8 Nonsense_Mutation p.R186* 0.10 TCGA-34-2608-01 17 45822501 45822501 C A TBX21 Silent p.G459G 0.12 TCGA-34-2608-01 17 56083173 56083173 T C SRSF1 Missense_Mutation p.R181G 0.11 deleterious(0) possibly_damaging(0.636) TCGA-34-2608-01 17 72874468 72874468 C T FADS6 Missense_Mutation p.G349R 0.23 deleterious(0) probably_damaging(1) TCGA-34-2608-01 17 7578457 7578457 C A TP53 Missense_Mutation p.R158L 0.11 deleterious(0) probably_damaging(0.986) TCGA-34-2608-01 17 79911086 79911086 C T NOTUM Nonsense_Mutation p.W414* 0.08 TCGA-34-2608-01 18 30092830 30092830 C A WBP11P1 RNA 0.07 TCGA-34-2608-01 18 50432441 50432441 A T DCC Missense_Mutation p.E147V 0.09 tolerated(0.16) benign(0.045) TCGA-34-2608-01 18 61166439 61166439 G T SERPINB5 Missense_Mutation p.E218D 0.14 deleterious(0.02) possibly_damaging(0.834) TCGA-34-2608-01 18 7888314 7888314 C G PTPRM Missense_Mutation p.P136R 0.05 tolerated(0.4) benign(0.262) TCGA-34-2608-01 19 15726540 15726540 C T AD000091.2 5'Flank 0.12 TCGA-34-2608-01 19 17122513 17122513 G A CPAMD8 Nonsense_Mutation p.Q155* 0.17 TCGA-34-2608-01 19 21606161 21606161 G A ZNF493 Missense_Mutation p.G234R 0.05 tolerated(0.1) possibly_damaging(0.844) TCGA-34-2608-01 19 22379425 22379425 T A ZNF676 Missense_Mutation p.N4I 0.12 deleterious(0.01) probably_damaging(0.987) TCGA-34-2608-01 19 35232076 35232076 C G ZNF181 Missense_Mutation p.P264A 0.04 deleterious(0) probably_damaging(0.91) TCGA-34-2608-01 19 425173 425173 C T SHC2 Silent p.E411E 0.16 TCGA-34-2608-01 19 54233112 54233112 G T MIR518E RNA 0.08 TCGA-34-2608-01 19 56688488 56688488 C A GALP Missense_Mutation p.P4H 0.10 deleterious_low_confidence(0) unknown(0) TCGA-34-2608-01 1 104114878 104114878 G T AMY2B Silent p.G105G 0.09 TCGA-34-2608-01 1 10434995 10434995 G T KIF1B Missense_Mutation p.R1681L 0.07 deleterious(0) probably_damaging(0.986) TCGA-34-2608-01 1 109265069 109265069 C T FNDC7 Silent p.S237S 0.13 TCGA-34-2608-01 1 1290419 1290419 C T MXRA8 Missense_Mutation p.V198M 0.14 tolerated(0.1) benign(0.267) TCGA-34-2608-01 1 150532713 150532713 C T ADAMTSL4 3'UTR 0.11 TCGA-34-2608-01 1 152057765 152057765 G A TCHHL1 Missense_Mutation p.S798F 0.15 deleterious(0.01) probably_damaging(0.921) TCGA-34-2608-01 1 156497786 156497786 C A IQGAP3 Missense_Mutation p.K1580N 0.09 deleterious(0) possibly_damaging(0.854) TCGA-34-2608-01 1 156875138 156875138 C A PEAR1 Missense_Mutation p.R77S 0.12 deleterious(0) possibly_damaging(0.809) TCGA-34-2608-01 1 169541473 169541473 C G F5 Missense_Mutation p.S120T 0.11 deleterious(0.03) possibly_damaging(0.716) TCGA-34-2608-01 1 203134304 203134304 G T ADORA1 Intron 0.12 TCGA-34-2608-01 1 203691776 203691776 A G ATP2B4 Missense_Mutation p.I995V 0.13 tolerated(0.2) benign(0.001) TCGA-34-2608-01 1 233137365 233137365 C A PCNXL2 Missense_Mutation p.R1672L 0.15 deleterious(0) benign(0.292) TCGA-34-2608-01 1 237666632 237666632 C T RYR2 Missense_Mutation p.L814F 0.09 possibly_damaging(0.593) TCGA-34-2608-01 1 248402321 248402321 G T OR2M4 Missense_Mutation p.V31F 0.12 deleterious(0) probably_damaging(0.916) TCGA-34-2608-01 1 26595018 26595018 C T CEP85 Silent p.C462C 0.05 TCGA-34-2608-01 1 37271748 37271748 C A GRIK3 Silent p.G757G 0.07 TCGA-34-2608-01 1 3806599 3806599 G A C1orf174 Silent p.S219S 0.14 TCGA-34-2608-01 1 6007263 6007263 T A NPHP4 Missense_Mutation p.R340S 0.11 deleterious(0) possibly_damaging(0.755) TCGA-34-2608-01 1 6305580 6305580 T C HES3 3'UTR 0.25 TCGA-34-2608-01 1 85648044 85648044 G A SYDE2 Missense_Mutation p.H761Y 0.05 deleterious(0.05) probably_damaging(0.999) TCGA-34-2608-01 20 2097910 2097910 C A STK35 Silent p.S497S 0.24 TCGA-34-2608-01 20 2616614 2616614 C G TMC2 Silent p.S783S 0.23 TCGA-34-2608-01 20 32328784 32328784 G C ZNF341 Missense_Mutation p.Q36H 0.16 deleterious(0.01) probably_damaging(0.946) TCGA-34-2608-01 20 49626384 49626384 G A KCNG1 Silent p.C164C 0.11 TCGA-34-2608-01 20 56098952 56098952 G A CTCFL Nonsense_Mutation p.Q104* 0.17 TCGA-34-2608-01 20 57829371 57829371 A C ZNF831 Missense_Mutation p.E1536A 0.24 tolerated(0.06) benign(0.036) TCGA-34-2608-01 21 43412303 43412303 G T ZBTB21 Silent p.A634A 0.07 TCGA-34-2608-01 21 43519180 43519180 A T UMODL1 Missense_Mutation p.Q359L 0.09 tolerated(0.14) benign(0.087) TCGA-34-2608-01 21 43522280 43522280 C T UMODL1 Silent p.A397A 0.08 TCGA-34-2608-01 22 25240894 25240894 C T SGSM1 Missense_Mutation p.R32C 0.09 deleterious(0) probably_damaging(0.996) TCGA-34-2608-01 2 102626181 102626181 T C IL1R2 Silent p.A75A 0.12 TCGA-34-2608-01 2 105859092 105859092 G A GPR45 Silent p.L259L 0.14 TCGA-34-2608-01 2 107052997 107052997 T C RGPD3 Missense_Mutation p.K503E 0.14 tolerated(0.08) benign(0.351) TCGA-34-2608-01 2 121747486 121747486 G A GLI2 Missense_Mutation p.M1332I 0.15 tolerated_low_confidence(0.32) benign(0.004) TCGA-34-2608-01 2 15470749 15470749 C A NBAS Missense_Mutation p.K1440N 0.10 tolerated(0.07) possibly_damaging(0.735) TCGA-34-2608-01 2 167322348 167322348 G A SCN7A Nonsense_Mutation p.Q272* 0.09 TCGA-34-2608-01 2 170058365 170058365 G T LRP2 Nonsense_Mutation p.S2742* 0.10 TCGA-34-2608-01 2 174055765 174055765 C T MLTK Intron 0.08 TCGA-34-2608-01 2 178098966 178098966 C G NFE2L2 Missense_Mutation p.D27H 0.09 deleterious(0) probably_damaging(1) TCGA-34-2608-01 2 178098973 178098973 C G NFE2L2 Missense_Mutation p.W24C 0.08 deleterious(0) probably_damaging(1) TCGA-34-2608-01 2 179424877 179424877 A G TTN Missense_Mutation p.V28661A 0.10 TCGA-34-2608-01 2 179606351 179606351 A G TTN Missense_Mutation p.F3870S 0.14 TCGA-34-2608-01 2 179621470 179621470 G A TTN Missense_Mutation p.S3578F 0.11 TCGA-34-2608-01 2 192550597 192550597 G T NABP1 3'UTR 0.29 TCGA-34-2608-01 2 196688978 196688978 C T DNAH7 Splice_Site p.X3097_splice 0.11 TCGA-34-2608-01 2 211163151 211163151 G T MYL1 Missense_Mutation p.S99R 0.10 tolerated(0.11) possibly_damaging(0.699) TCGA-34-2608-01 2 230678590 230678590 T C TRIP12 Missense_Mutation p.H613R 0.12 tolerated(0.08) benign(0.004) TCGA-34-2608-01 2 31624177 31624177 G T XDH Missense_Mutation p.A72D 0.15 deleterious(0) probably_damaging(0.956) TCGA-34-2608-01 2 48808989 48808989 C A STON1-GTF2A1L Missense_Mutation p.P406Q 0.13 tolerated(0.86) benign(0.415) TCGA-34-2608-01 2 49381457 49381457 C T FSHR Missense_Mutation p.E34K 0.06 tolerated(0.74) benign(0.004) TCGA-34-2608-01 2 98409416 98409416 T A TMEM131 Missense_Mutation p.S1193C 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.514) TCGA-34-2608-01 3 108147461 108147461 C G MYH15 Missense_Mutation p.E1214Q 0.12 deleterious(0.01) possibly_damaging(0.872) TCGA-34-2608-01 3 109052761 109052761 G T DPPA4 Nonsense_Mutation p.S45* 0.13 TCGA-34-2608-01 3 126062578 126062578 C T KLF15 Missense_Mutation p.V415M 0.08 tolerated(0.09) benign(0.003) TCGA-34-2608-01 3 133560150 133560150 C T RAB6B Missense_Mutation p.V90M 0.26 deleterious(0) probably_damaging(0.994) TCGA-34-2608-01 3 136221539 136221539 G A STAG1 Silent p.A253A 0.06 TCGA-34-2608-01 3 140866274 140866274 C T SPSB4 3'UTR 0.17 TCGA-34-2608-01 3 150911530 150911530 C G MED12L Intron 0.15 TCGA-34-2608-01 3 19295336 19295336 G A KCNH8 Silent p.E89E 0.09 TCGA-34-2608-01 3 45781107 45781107 C T SACM1L Missense_Mutation p.S533L 0.12 deleterious(0.01) benign(0.068) TCGA-34-2608-01 3 50332932 50332932 C T HYAL3 Silent p.L34L 0.19 TCGA-34-2608-01 4 106510544 106510544 T C ARHGEF38 Silent p.D112D 0.12 TCGA-34-2608-01 4 134084389 134084389 G A PCDH10 Missense_Mutation p.D1019N 0.11 deleterious_low_confidence(0.01) benign(0.251) TCGA-34-2608-01 4 143350346 143350346 G T INPP4B Missense_Mutation p.P39Q 0.14 deleterious(0) probably_damaging(0.914) TCGA-34-2608-01 4 169300557 169300557 G A DDX60L Silent p.L1440L 0.05 TCGA-34-2608-01 4 188924186 188924186 C A ZFP42 Nonsense_Mutation p.C75* 0.08 TCGA-34-2608-01 4 22414850 22414850 G A GPR125 Silent p.I729I 0.07 TCGA-34-2608-01 4 66270100 66270100 G A EPHA5 Silent p.L594L 0.15 TCGA-34-2608-01 4 69974002 69974002 C A UGT2B7 Missense_Mutation p.D424E 0.03 tolerated(0.05) possibly_damaging(0.712) TCGA-34-2608-01 4 89425483 89425483 G C HERC5 Missense_Mutation p.D895H 0.05 deleterious(0) possibly_damaging(0.907) TCGA-34-2608-01 5 10465045 10465045 G T ROPN1L Missense_Mutation p.D227Y 0.13 deleterious_low_confidence(0.01) benign(0.205) TCGA-34-2608-01 5 140167125 140167125 G A PCDHA1 Missense_Mutation p.S417N 0.05 tolerated_low_confidence(0.07) benign(0.011) TCGA-34-2608-01 5 140530346 140530346 A G PCDHB6 Missense_Mutation p.T170A 0.17 deleterious(0.02) benign(0.029) TCGA-34-2608-01 5 172396424 172396424 C T RPL26L1 Silent p.I106I 0.13 TCGA-34-2608-01 5 63257020 63257020 C A HTR1A Missense_Mutation p.R176L 0.17 deleterious(0) probably_damaging(0.987) TCGA-34-2608-01 5 67589550 67589552 AAG - PIK3R1 In_Frame_Del p.E439del 0.11 TCGA-34-2608-01 5 96083050 96083050 A G CAST Missense_Mutation p.D388G 0.17 deleterious(0.02) probably_damaging(0.99) TCGA-34-2608-01 6 146126628 146126628 C T FBXO30 Missense_Mutation p.G305D 0.05 tolerated(0.25) benign(0.001) TCGA-34-2608-01 6 155750042 155750042 G T NOX3 Missense_Mutation p.P344H 0.09 deleterious(0) probably_damaging(1) TCGA-34-2608-01 6 162475185 162475185 C T PARK2 Missense_Mutation p.V186I 0.07 deleterious(0.04) probably_damaging(0.99) TCGA-34-2608-01 6 26032091 26032098 CAGCTTCC AA HIST1H3B In_Frame_Del p.R64_K65del 0.23 TCGA-34-2608-01 6 45480107 45480107 G A RUNX2 Silent p.G328G 0.08 TCGA-34-2608-01 6 47846506 47846506 C T PTCHD4 Missense_Mutation p.V692I 0.15 tolerated(0.58) probably_damaging(0.959) TCGA-34-2608-01 6 51944713 51944713 A C PKHD1 Missense_Mutation p.D125E 0.10 tolerated(0.43) benign(0.015) TCGA-34-2608-01 6 6305716 6305716 C A F13A1 Missense_Mutation p.V63L 0.08 tolerated(0.32) benign(0.001) TCGA-34-2608-01 6 6305717 6305717 C A F13A1 Missense_Mutation p.K62N 0.09 deleterious(0) probably_damaging(0.993) TCGA-34-2608-01 6 63995564 63995564 C G LGSN Missense_Mutation p.Q86H 0.11 tolerated(0.27) benign(0.006) TCGA-34-2608-01 6 75799856 75799856 G C COL12A1 Missense_Mutation p.P2971A 0.10 probably_damaging(0.999) TCGA-34-2608-01 7 102098423 102098423 A G ALKBH4 Silent p.Y109Y 0.09 TCGA-34-2608-01 7 127231094 127231094 G T ARF5 Silent p.V136V 0.12 TCGA-34-2608-01 7 134617824 134617824 C A CALD1 Silent p.R102R 0.11 TCGA-34-2608-01 7 1478561 1478561 C A MICALL2 Missense_Mutation p.W679C 0.16 deleterious(0) probably_damaging(0.992) TCGA-34-2608-01 7 154379801 154379801 C A DPP6 Intron 0.14 TCGA-34-2608-01 7 35130052 35130052 C T DPY19L2P1 RNA 0.12 TCGA-34-2608-01 7 4947058 4947058 G A MMD2 Missense_Mutation p.P261L 0.13 deleterious(0) possibly_damaging(0.477) TCGA-34-2608-01 7 50660793 50660793 G A GRB10 Silent p.C547C 0.11 TCGA-34-2608-01 7 72209495 72209495 G C TYW1B 3'UTR 0.15 TCGA-34-2608-01 8 113651048 113651048 G T CSMD3 Missense_Mutation p.R1135S 0.18 deleterious(0.03) probably_damaging(0.914) TCGA-34-2608-01 8 19315990 19315990 G A CSGALNACT1 Silent p.I266I 0.12 TCGA-34-2608-01 8 2044123 2044123 A T MYOM2 Missense_Mutation p.N721I 0.10 deleterious(0.02) possibly_damaging(0.715) TCGA-34-2608-01 8 2820848 2820848 G T CSMD1 Missense_Mutation p.S3117Y 0.09 possibly_damaging(0.741) TCGA-34-2608-01 8 55538745 55538745 C G RP1 Missense_Mutation p.S768C 0.07 tolerated(0.11) possibly_damaging(0.525) TCGA-34-2608-01 8 74209560 74209560 G A RDH10 Missense_Mutation p.V141I 0.04 tolerated(1) benign(0.003) TCGA-34-2608-01 9 129595397 129595397 T G ZBTB43 Missense_Mutation p.H203Q 0.16 tolerated(0.42) benign(0.284) TCGA-34-2608-01 9 140243631 140243631 G A EXD3 Silent p.H587H 0.22 TCGA-34-2608-01 9 34610935 34610935 A T RPP25L Missense_Mutation p.L120Q 0.15 deleterious(0) probably_damaging(0.998) TCGA-34-2608-01 9 40789301 40789301 T G ZNF658 5'UTR 0.11 TCGA-34-2608-01 X 111078161 111078161 A G TRPC5 Silent p.Y628Y 0.27 TCGA-34-2608-01 X 147030384 147030384 A G FMR1 3'UTR 0.24 TCGA-34-2608-01 X 21675997 21675997 G A KLHL34 5'UTR 0.21 TCGA-34-2608-01 X 53241055 53241055 C G KDM5C Missense_Mutation p.E386Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-34-2608-01 X 91090933 91090933 A G PCDH11X Missense_Mutation p.I144V 0.32 deleterious(0) possibly_damaging(0.728) TCGA-34-2609-01 10 104158610 104158610 G C NFKB2 Missense_Mutation p.G369A 0.19 tolerated(0.11) benign(0.045) TCGA-34-2609-01 10 115383296 115383296 C A NRAP Missense_Mutation p.A817S 0.22 deleterious(0.01) benign(0.031) TCGA-34-2609-01 10 123279628 123279629 - GTG FGFR2 In_Frame_Ins p.T268dup 0.23 TCGA-34-2609-01 10 134218251 134218251 A T PWWP2B Missense_Mutation p.S83C 0.20 tolerated(0.07) benign(0.305) TCGA-34-2609-01 10 22675800 22675800 A T SPAG6 Missense_Mutation p.H197L 0.21 deleterious(0) possibly_damaging(0.846) TCGA-34-2609-01 10 28149680 28149680 C A ARMC4 Silent p.V965V 0.22 TCGA-34-2609-01 10 54053566 54053566 C T PRKG1 Missense_Mutation p.A656V 0.19 tolerated(0.06) benign(0.062) TCGA-34-2609-01 10 55591287 55591287 C A PCDH15 Missense_Mutation p.L1330F 0.12 deleterious(0) probably_damaging(0.999) TCGA-34-2609-01 10 55626613 55626613 G T PCDH15 Missense_Mutation p.T1169N 0.22 tolerated(0.18) possibly_damaging(0.898) TCGA-34-2609-01 10 7771916 7771916 C A ITIH2 Silent p.G427G 0.12 TCGA-34-2609-01 10 83635708 83635708 C A NRG3 Missense_Mutation p.S204R 0.10 tolerated(0.07) benign(0.206) TCGA-34-2609-01 10 91405149 91405149 C G PANK1 5'UTR 0.29 TCGA-34-2609-01 10 96018840 96018840 C T PLCE1 Silent p.S1249S 0.17 TCGA-34-2609-01 11 10516451 10516451 G A AMPD3 Silent p.R389R 0.22 TCGA-34-2609-01 11 111367887 111367887 T C BTG4 Intron 0.18 TCGA-34-2609-01 11 45265569 45265569 G T SYT13 3'UTR 0.34 TCGA-34-2609-01 11 48239263 48239263 G A OR4B1 Missense_Mutation p.S301N 0.20 tolerated(0.36) benign(0.001) TCGA-34-2609-01 11 4870440 4870440 G T OR51S1 5'UTR 0.13 TCGA-34-2609-01 11 5153428 5153428 C T OR52A5 Missense_Mutation p.G149R 0.23 deleterious(0.01) benign(0.053) TCGA-34-2609-01 11 55035841 55035841 T A TRIM48 Missense_Mutation p.L191I 0.10 tolerated(0.23) benign(0.098) TCGA-34-2609-01 11 55406579 55406579 T C OR4P4 Missense_Mutation p.F249S 0.06 deleterious(0) probably_damaging(0.993) TCGA-34-2609-01 11 55579092 55579092 G T OR5L1 Missense_Mutation p.Q50H 0.15 deleterious(0.05) benign(0.077) TCGA-34-2609-01 11 5566635 5566635 C A OR52H1 Missense_Mutation p.C40F 0.07 tolerated(0.25) benign(0.003) TCGA-34-2609-01 11 55735789 55735789 A T OR10AG1 Missense_Mutation p.Y51N 0.12 deleterious(0) probably_damaging(0.96) TCGA-34-2609-01 11 55904999 55904999 G C OR8J3 Missense_Mutation p.L66V 0.14 deleterious(0) probably_damaging(0.997) TCGA-34-2609-01 11 57147146 57147146 C A PRG3 Missense_Mutation p.A66S 0.14 tolerated(0.18) benign(0.043) TCGA-34-2609-01 11 67267466 67267466 G T PITPNM1 Missense_Mutation p.Q328K 0.17 tolerated(0.32) benign(0.014) TCGA-34-2609-01 11 71146801 71146801 T C DHCR7 Missense_Mutation p.I350V 0.18 tolerated(0.15) benign(0.029) TCGA-34-2609-01 11 92088256 92088256 G T FAT3 Missense_Mutation p.R993L 0.15 probably_damaging(1) TCGA-34-2609-01 12 102040593 102040593 C G MYBPC1 Missense_Mutation p.Q315E 0.17 deleterious(0) benign(0.027) TCGA-34-2609-01 12 103696035 103696035 G A C12orf42 Missense_Mutation p.L312F 0.28 deleterious(0.04) probably_damaging(0.998) TCGA-34-2609-01 12 104519897 104519897 C T NFYB Missense_Mutation p.G76R 0.16 deleterious(0.03) benign(0.129) TCGA-34-2609-01 12 112846066 112846066 C A RPL6 Missense_Mutation p.R105L 0.21 deleterious(0.04) benign(0.051) TCGA-34-2609-01 12 123214480 123214480 A G HCAR1 Missense_Mutation p.V136A 0.14 tolerated(1) benign(0.01) TCGA-34-2609-01 12 1943779 1943779 C T LRTM2 Silent p.Y335Y 0.12 TCGA-34-2609-01 12 26640067 26640067 T C ITPR2 Missense_Mutation p.I1830V 0.10 tolerated(0.35) benign(0.001) TCGA-34-2609-01 12 27064186 27064186 G A ASUN Missense_Mutation p.P624S 0.13 tolerated(0.16) probably_damaging(0.987) TCGA-34-2609-01 12 43771361 43771361 G T ADAMTS20 Missense_Mutation p.A1601E 0.12 deleterious(0) possibly_damaging(0.713) TCGA-34-2609-01 12 49431109 49431109 C A KMT2D Missense_Mutation p.A3344S 0.29 possibly_damaging(0.621) TCGA-34-2609-01 12 50037820 50037820 G A FMNL3 3'UTR 0.18 TCGA-34-2609-01 12 51759342 51759342 T A GALNT6 Missense_Mutation p.E229V 0.17 deleterious(0) possibly_damaging(0.887) TCGA-34-2609-01 12 51891000 51891000 G A SLC4A8 Intron 0.13 TCGA-34-2609-01 12 52760787 52760787 C T KRT85 Missense_Mutation p.A135T 0.04 deleterious(0) probably_damaging(0.997) TCGA-34-2609-01 12 55795003 55795003 C A OR6C65 Missense_Mutation p.Q231K 0.22 deleterious_low_confidence(0.03) benign(0.232) TCGA-34-2609-01 12 56537630 56537630 A G ESYT1 Missense_Mutation p.D1110G 0.13 deleterious(0.03) benign(0.208) TCGA-34-2609-01 12 57965894 57965894 C A KIF5A Missense_Mutation p.S471R 0.11 tolerated(0.14) benign(0.002) TCGA-34-2609-01 12 69252756 69252756 T C CPM Missense_Mutation p.N346D 0.33 tolerated(0.37) probably_damaging(0.996) TCGA-34-2609-01 12 71139821 71139821 C A PTPRR Missense_Mutation p.D262Y 0.16 deleterious(0.03) possibly_damaging(0.707) TCGA-34-2609-01 12 7559191 7559191 T A CD163L1 Nonsense_Mutation p.R342* 0.32 TCGA-34-2609-01 12 78362382 78362382 C A NAV3 Missense_Mutation p.Q191K 0.28 tolerated_low_confidence(0.27) benign(0.132) TCGA-34-2609-01 12 81112140 81112140 G T MYF5 Nonsense_Mutation p.E169* 0.22 TCGA-34-2609-01 12 9345305 9345305 G T PZP Missense_Mutation p.H429N 0.41 tolerated(0.22) benign(0) TCGA-34-2609-01 13 28834653 28834653 G A PAN3 Missense_Mutation p.A440T 0.29 tolerated(0.16) possibly_damaging(0.652) TCGA-34-2609-01 13 29599621 29599621 G T MTUS2 Silent p.V272V 0.19 TCGA-34-2609-01 13 36909188 36909188 C A SPG20 Silent p.T260T 0.16 TCGA-34-2609-01 13 40239240 40239240 A T COG6 Missense_Mutation p.K126M 0.28 deleterious(0) probably_damaging(0.995) TCGA-34-2609-01 13 58209090 58209090 C A PCDH17 Missense_Mutation p.L804M 0.32 deleterious(0.01) probably_damaging(0.969) TCGA-34-2609-01 13 95034804 95034804 G T GPC6 Missense_Mutation p.R430I 0.30 deleterious(0) probably_damaging(0.931) TCGA-34-2609-01 13 96578029 96578029 C A UGGT2 Splice_Site p.X734_splice 0.30 TCGA-34-2609-01 14 100835456 100835456 C G WARS Missense_Mutation p.V23L 0.15 deleterious_low_confidence(0.04) benign(0.214) TCGA-34-2609-01 14 20389095 20389095 G A OR4K5 Silent p.G110G 0.06 TCGA-34-2609-01 14 20528320 20528320 G T OR4L1 Silent p.V39V 0.52 TCGA-34-2609-01 14 45400666 45400666 C A KLHL28 Silent p.V474V 0.30 TCGA-34-2609-01 14 52535579 52535580 - C NID2 Frame_Shift_Ins p.D45Gfs*54 0.20 TCGA-34-2609-01 14 55647471 55647471 C T DLGAP5 Silent p.S202S 0.12 TCGA-34-2609-01 14 74824465 74824466 - T VRTN Frame_Shift_Ins p.G327Vfs*27 0.09 TCGA-34-2609-01 14 86089046 86089046 G A FLRT2 Silent p.T396T 0.29 TCGA-34-2609-01 14 90263513 90263513 C T EFCAB11 3'UTR 0.25 TCGA-34-2609-01 14 94640906 94640906 G T PPP4R4 Missense_Mutation p.R35L 0.13 tolerated(0.13) benign(0.34) TCGA-34-2609-01 14 96706830 96706830 G C BDKRB2 Missense_Mutation p.W55C 0.16 deleterious(0) possibly_damaging(0.906) TCGA-34-2609-01 14 97031471 97031471 A G PAPOLA 3'UTR 0.45 TCGA-34-2609-01 15 102516481 102516481 A G WASH3P 3'Flank 0.10 TCGA-34-2609-01 15 20644193 20644193 C A HERC2P3 RNA 0.11 TCGA-34-2609-01 15 22368967 22368967 A G OR4M2 Missense_Mutation p.H131R 0.06 tolerated(0.16) benign(0.001) TCGA-34-2609-01 15 23444035 23444035 G T AC100757.1 5'Flank 0.10 TCGA-34-2609-01 15 34536193 34536193 C T SLC12A6 Missense_Mutation p.R675Q 0.04 deleterious(0) probably_damaging(0.986) TCGA-34-2609-01 15 42172064 42172064 T A SPTBN5 Splice_Site p.X938_splice 0.30 TCGA-34-2609-01 15 44090622 44090622 C A SERINC4 Splice_Site p.X180_splice 0.11 TCGA-34-2609-01 15 44090623 44090623 C A SERINC4 Missense_Mutation p.A180S 0.11 deleterious(0.01) possibly_damaging(0.851) TCGA-34-2609-01 15 48431291 48431291 T A SLC24A5 Missense_Mutation p.Y333N 0.39 deleterious(0.02) benign(0.243) TCGA-34-2609-01 15 63988325 63988325 G C HERC1 Missense_Mutation p.Q1707E 0.31 possibly_damaging(0.621) TCGA-34-2609-01 15 85147415 85147415 G T ZSCAN2 Missense_Mutation p.R86L 0.23 tolerated(0.08) probably_damaging(0.988) TCGA-34-2609-01 15 89401093 89401093 C A ACAN Silent p.S1759S 0.12 TCGA-34-2609-01 15 89698638 89698638 C A ABHD2 Missense_Mutation p.H137Q 0.22 tolerated(0.12) possibly_damaging(0.515) TCGA-34-2609-01 15 91489864 91489864 G T UNC45A Missense_Mutation p.G407V 0.30 tolerated(0.05) benign(0.292) TCGA-34-2609-01 15 96875826 96875826 G A NR2F2 Intron 0.35 TCGA-34-2609-01 15 98509250 98509250 A G ARRDC4 Missense_Mutation p.D167G 0.20 deleterious(0) possibly_damaging(0.859) TCGA-34-2609-01 16 20975141 20975141 C A DNAH3 Silent p.L3355L 0.30 TCGA-34-2609-01 16 23702361 23702361 G T ERN2 Missense_Mutation p.H906N 0.08 deleterious(0.03) probably_damaging(0.998) TCGA-34-2609-01 16 27460517 27460517 C A IL21R Silent p.P510P 0.33 TCGA-34-2609-01 16 2882004 2882004 C A ZG16B Silent p.P157P 0.13 TCGA-34-2609-01 16 30735950 30735950 A T SRCAP Silent p.A1735A 0.34 TCGA-34-2609-01 16 31202374 31202374 G T FUS Missense_Mutation p.R495L 0.29 tolerated_low_confidence(0.09) possibly_damaging(0.726) TCGA-34-2609-01 16 3297171 3297171 G T MEFV Missense_Mutation p.H478N 0.10 deleterious(0.01) benign(0.076) TCGA-34-2609-01 16 49764790 49764790 C A ZNF423 Missense_Mutation p.D57Y 0.18 deleterious_low_confidence(0.01) benign(0.1) TCGA-34-2609-01 16 51173643 51173643 T G SALL1 Missense_Mutation p.E830D 0.09 tolerated(0.5) benign(0.006) TCGA-34-2609-01 16 76572131 76572131 C G CNTNAP4 Missense_Mutation p.S965R 0.32 tolerated(0.47) benign(0.008) TCGA-34-2609-01 17 10297565 10297565 C G MYH8 Splice_Site p.X1722_splice 0.28 TCGA-34-2609-01 17 10416190 10416190 G C MYH1 Missense_Mutation p.L300V 0.36 deleterious(0.02) benign(0.201) TCGA-34-2609-01 17 10424559 10424559 G T MYH2 3'UTR 0.43 TCGA-34-2609-01 17 1564605 1564605 T G PRPF8 Missense_Mutation p.D1433A 0.13 deleterious(0) probably_damaging(1) TCGA-34-2609-01 17 16852055 16852055 G T TNFRSF13B Missense_Mutation p.P148T 0.22 deleterious(0.01) benign(0.111) TCGA-34-2609-01 17 2202695 2202695 G A SMG6 Missense_Mutation p.T451I 0.18 tolerated(0.08) probably_damaging(0.917) TCGA-34-2609-01 17 36361788 36361788 C G RP11-1407O15.2 Missense_Mutation p.R186T 0.29 TCGA-34-2609-01 17 36708222 36708222 C A SRCIN1 Missense_Mutation p.G876V 0.42 deleterious(0.01) possibly_damaging(0.57) TCGA-34-2609-01 17 4060250 4060250 C T CYB5D2 Silent p.T223T 0.10 TCGA-34-2609-01 17 42030824 42030824 C A PYY Missense_Mutation p.A10S 0.36 tolerated(0.74) possibly_damaging(0.483) TCGA-34-2609-01 17 47210444 47210444 C G B4GALNT2 Silent p.G19G 0.18 TCGA-34-2609-01 17 56384192 56384192 A G BZRAP1 Silent p.Y1707Y 0.10 TCGA-34-2609-01 17 61557257 61557257 A C ACE Missense_Mutation p.E213D 0.39 tolerated(0.11) benign(0.164) TCGA-34-2609-01 17 61574280 61574280 C T ACE Missense_Mutation p.R1209C 0.58 deleterious(0.04) probably_damaging(0.975) TCGA-34-2609-01 17 74136217 74136217 G T FOXJ1 Missense_Mutation p.T87K 0.35 deleterious(0.01) probably_damaging(0.956) TCGA-34-2609-01 17 7579494 7579494 T A TP53 Nonsense_Mutation p.R65* 0.44 TCGA-34-2609-01 17 76450695 76450695 G A DNAH17 Silent p.S3407S 0.09 TCGA-34-2609-01 17 9792849 9792849 C A GLP2R Missense_Mutation p.L497I 0.39 tolerated(0.2) benign(0.035) TCGA-34-2609-01 18 65178183 65178183 C A DSEL 3'UTR 0.25 TCGA-34-2609-01 18 9559505 9559505 T C PPP4R1 Missense_Mutation p.Y647C 0.36 deleterious(0) probably_damaging(0.997) TCGA-34-2609-01 19 12502084 12502084 A G ZNF799 Silent p.H376H 0.28 TCGA-34-2609-01 19 15905015 15905015 C A OR10H5 Missense_Mutation p.R53S 0.13 deleterious(0.05) benign(0.166) TCGA-34-2609-01 19 17899120 17899120 G T FCHO1 3'UTR 0.23 TCGA-34-2609-01 19 1828260 1828260 C A REXO1 Silent p.P176P 0.30 TCGA-34-2609-01 19 35175901 35175901 A G ZNF302 Missense_Mutation p.K320R 0.12 deleterious(0) possibly_damaging(0.898) TCGA-34-2609-01 19 37961243 37961243 A T ZNF570 5'UTR 0.27 TCGA-34-2609-01 19 38993325 38993325 C A RYR1 Missense_Mutation p.A2598E 0.12 benign(0.043) TCGA-34-2609-01 19 39443224 39443224 C A FBXO17 Intron 0.33 TCGA-34-2609-01 19 39898644 39898644 G T ZFP36 Missense_Mutation p.A102S 0.19 tolerated(0.6) benign(0.014) TCGA-34-2609-01 19 40581756 40581756 C A ZNF780A Missense_Mutation p.C199F 0.20 deleterious(0) probably_damaging(1) TCGA-34-2609-01 19 43242998 43242998 G C PSG3 Missense_Mutation p.S103C 0.21 deleterious(0.03) benign(0.25) TCGA-34-2609-01 19 43420347 43420347 G T PSG6 Nonsense_Mutation p.Y119* 0.13 TCGA-34-2609-01 19 48643396 48643396 G C LIG1 Missense_Mutation p.R307G 0.19 deleterious(0.01) possibly_damaging(0.698) TCGA-34-2609-01 19 50939898 50939898 G T MYBPC2 Missense_Mutation p.G124W 0.16 deleterious(0.01) possibly_damaging(0.791) TCGA-34-2609-01 19 52394706 52394706 T A ZNF649 Missense_Mutation p.H228L 0.25 deleterious(0) benign(0.368) TCGA-34-2609-01 19 5244068 5244068 C A PTPRS Missense_Mutation p.V472L 0.19 tolerated(0.52) possibly_damaging(0.865) TCGA-34-2609-01 19 55286647 55286647 A G KIR2DL1 Missense_Mutation p.Q134R 0.11 deleterious(0.03) possibly_damaging(0.896) TCGA-34-2609-01 19 55325412 55325412 C A KIR2DL4 Missense_Mutation p.T292N 0.19 tolerated(0.06) possibly_damaging(0.823) TCGA-34-2609-01 19 56041199 56041199 G T SBK2 Missense_Mutation p.S316R 0.31 deleterious(0.04) benign(0.383) TCGA-34-2609-01 19 8467443 8467443 C G RAB11B Missense_Mutation p.L169V 0.10 deleterious_low_confidence(0) possibly_damaging(0.474) TCGA-34-2609-01 19 8595138 8595138 C G MYO1F Missense_Mutation p.G757A 0.09 tolerated(0.24) benign(0.015) TCGA-34-2609-01 19 8809130 8809130 G A ACTL9 5'UTR 0.14 TCGA-34-2609-01 1 110299666 110299666 C A EPS8L3 Missense_Mutation p.G365V 0.12 tolerated(0.15) possibly_damaging(0.687) TCGA-34-2609-01 1 145293197 145293197 G A NBPF10 5'Flank 0.19 TCGA-34-2609-01 1 150468962 150468962 C A TARS2 Nonsense_Mutation p.S260* 0.10 TCGA-34-2609-01 1 152659593 152659593 T G LCE2B Missense_Mutation p.C92G 0.25 tolerated_low_confidence(0.54) unknown(0) TCGA-34-2609-01 1 152975878 152975878 C A SPRR3 Missense_Mutation p.P128T 0.13 deleterious(0.02) possibly_damaging(0.703) TCGA-34-2609-01 1 155028574 155028574 G C ADAM15 Missense_Mutation p.V255L 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-34-2609-01 1 155257109 155257109 G T HCN3 Missense_Mutation p.M541I 0.15 tolerated(1) benign(0.001) TCGA-34-2609-01 1 158299697 158299697 G A CD1B Silent p.C184C 0.27 TCGA-34-2609-01 1 159557760 159557760 G C APCS Missense_Mutation p.A17P 0.18 deleterious(0.01) possibly_damaging(0.905) TCGA-34-2609-01 1 16356551 16356551 C A CLCNKA Silent p.P463P 0.31 TCGA-34-2609-01 1 16727300 16727300 G A SPATA21 Silent p.P363P 0.20 TCGA-34-2609-01 1 175362938 175362938 C A TNR Missense_Mutation p.W445L 0.10 deleterious(0.01) probably_damaging(1) TCGA-34-2609-01 1 183775514 183775514 G T RGL1 Silent p.S46S 0.11 TCGA-34-2609-01 1 19441941 19441941 C A UBR4 Nonsense_Mutation p.G3672* 0.16 TCGA-34-2609-01 1 196879517 196879517 C A CFHR4 Nonsense_Mutation p.Y301* 0.29 TCGA-34-2609-01 1 196887424 196887424 C - CFHR4 Frame_Shift_Del p.T541Kfs*30 0.19 TCGA-34-2609-01 1 197072694 197072694 C T ASPM Missense_Mutation p.R1896K 0.20 tolerated(0.19) benign(0.032) TCGA-34-2609-01 1 228210456 228210456 C T WNT3A Missense_Mutation p.R54C 0.21 deleterious(0) probably_damaging(0.987) TCGA-34-2609-01 1 230883246 230883246 C T CAPN9 Missense_Mutation p.P2S 0.15 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-34-2609-01 1 24392443 24392443 C - MYOM3 Frame_Shift_Del p.A1158Qfs*70 0.25 TCGA-34-2609-01 1 2440453 2440453 C A PANK4 Missense_Mutation p.D719Y 0.14 deleterious(0) probably_damaging(0.998) TCGA-34-2609-01 1 247835843 247835843 C A OR13G1 Silent p.G167G 0.28 TCGA-34-2609-01 1 248344022 248344022 C A OR2M2 Silent p.L245L 0.10 TCGA-34-2609-01 1 26516093 26516093 A G CNKSR1 3'UTR 0.17 TCGA-34-2609-01 1 28527856 28527856 C A DNAJC8 Missense_Mutation p.S222I 0.30 deleterious(0) probably_damaging(0.994) TCGA-34-2609-01 1 43665125 43665125 C T WDR65 Missense_Mutation p.T498I 0.27 deleterious(0) benign(0.189) TCGA-34-2609-01 1 63284714 63284714 G A ATG4C Missense_Mutation p.D145N 0.35 deleterious(0) probably_damaging(0.932) TCGA-34-2609-01 1 6521631 6521631 C A TNFRSF25 Missense_Mutation p.D382Y 0.23 deleterious(0) probably_damaging(0.998) TCGA-34-2609-01 1 72076781 72076781 C T NEGR1 Missense_Mutation p.R239H 0.14 tolerated(0.13) benign(0.033) TCGA-34-2609-01 1 9019042 9019042 T C CA6 Missense_Mutation p.V161A 0.26 deleterious(0.04) probably_damaging(0.963) TCGA-34-2609-01 1 92612816 92612816 A T BTBD8 Missense_Mutation p.D337V 0.15 tolerated(0.11) possibly_damaging(0.535) TCGA-34-2609-01 20 23586456 23586456 G T CST9 Missense_Mutation p.L16M 0.11 deleterious(0.05) probably_damaging(0.998) TCGA-34-2609-01 20 30522546 30522546 G C TTLL9 Missense_Mutation p.G287R 0.51 deleterious(0.02) possibly_damaging(0.635) TCGA-34-2609-01 20 40980756 40980756 G A PTPRT Missense_Mutation p.P577L 0.47 deleterious(0) probably_damaging(0.988) TCGA-34-2609-01 20 43547652 43547652 C T PABPC1L Silent p.D203D 0.05 TCGA-34-2609-01 20 52774698 52774698 G A CYP24A1 Missense_Mutation p.T388M 0.10 deleterious(0.02) probably_damaging(0.99) TCGA-34-2609-01 20 54824708 54824708 C G MC3R Missense_Mutation p.T270S 0.19 tolerated(0.29) benign(0.047) TCGA-34-2609-01 20 5922681 5922681 A G TRMT6 Missense_Mutation p.I343T 0.13 tolerated(0.13) benign(0.005) TCGA-34-2609-01 20 61978052 61978052 C A CHRNA4 3'UTR 0.29 TCGA-34-2609-01 21 37445054 37445054 G C CBR1 Silent p.A236A 0.41 TCGA-34-2609-01 22 17265041 17265041 A T XKR3 Missense_Mutation p.F283Y 0.56 deleterious(0.02) possibly_damaging(0.787) TCGA-34-2609-01 22 27019263 27019263 C T CRYBA4 Silent p.S35S 0.06 TCGA-34-2609-01 22 30887901 30887901 C T SEC14L4 Silent p.Q277Q 0.20 TCGA-34-2609-01 22 39773704 39773704 G T SYNGR1 Intron 0.25 TCGA-34-2609-01 2 136473142 136473142 C G R3HDM1 Missense_Mutation p.P885R 0.30 deleterious(0) possibly_damaging(0.905) TCGA-34-2609-01 2 166740375 166740375 C T TTC21B Missense_Mutation p.D1205N 0.19 deleterious(0) probably_damaging(1) TCGA-34-2609-01 2 178969051 178969051 A T CYCTP RNA 0.38 TCGA-34-2609-01 2 179260232 179260232 G A OSBPL6 Nonsense_Mutation p.W942* 0.17 TCGA-34-2609-01 2 179454597 179454597 C A TTN Missense_Mutation p.V20619F 0.45 TCGA-34-2609-01 2 197521851 197521851 G T CCDC150 Silent p.S189S 0.38 TCGA-34-2609-01 2 207429768 207429768 G T ADAM23 Missense_Mutation p.G457V 0.14 tolerated(0.51) benign(0.063) TCGA-34-2609-01 2 21224730 21224730 C A APOB Missense_Mutation p.D4522Y 0.09 possibly_damaging(0.832) TCGA-34-2609-01 2 21224731 21224731 A T APOB Silent p.I4521I 0.11 TCGA-34-2609-01 2 214354774 214354774 C T SPAG16 Silent p.L344L 0.35 TCGA-34-2609-01 2 218925603 218925603 A T CXCR2P1 RNA 0.36 TCGA-34-2609-01 2 225370766 225370766 C A CUL3 Silent p.A371A 0.32 TCGA-34-2609-01 2 231658033 231658033 A G CAB39 Missense_Mutation p.M129V 0.30 tolerated(0.43) benign(0.007) TCGA-34-2609-01 2 242146998 242146998 G T ANO7 Silent p.L384L 0.31 TCGA-34-2609-01 2 31588365 31588365 C A XDH Missense_Mutation p.M834I 0.13 deleterious(0.04) probably_damaging(0.966) TCGA-34-2609-01 2 44566410 44566410 C G PREPL Missense_Mutation p.G282A 0.12 tolerated(0.34) benign(0.007) TCGA-34-2609-01 2 48936124 48936124 T G LHCGR Missense_Mutation p.N215H 0.16 tolerated(0.08) benign(0.032) TCGA-34-2609-01 2 55404868 55404868 C A CLHC1 Missense_Mutation p.Q478H 0.10 tolerated(0.39) benign(0.003) TCGA-34-2609-01 2 58449158 58449158 C T FANCL Missense_Mutation p.R98K 0.25 tolerated(1) benign(0) TCGA-34-2609-01 3 109049377 109049377 C A DPPA4 Missense_Mutation p.A225S 0.42 tolerated(0.2) benign(0.314) TCGA-34-2609-01 3 112666759 112666759 G A CD200R1 Missense_Mutation p.A27V 0.24 tolerated(0.47) benign(0.135) TCGA-34-2609-01 3 115394885 115394885 A T GAP43 Missense_Mutation p.K55M 0.12 deleterious(0) probably_damaging(0.997) TCGA-34-2609-01 3 121134723 121134723 T A STXBP5L Missense_Mutation p.F1069Y 0.19 tolerated(0.23) probably_damaging(0.998) TCGA-34-2609-01 3 126220730 126220730 G C UROC1 Missense_Mutation p.L322V 0.26 tolerated(0.53) benign(0.002) TCGA-34-2609-01 3 129373840 129373840 G C TMCC1 Missense_Mutation p.Q540E 0.21 deleterious(0) possibly_damaging(0.669) TCGA-34-2609-01 3 134960100 134960100 A T EPHB1 Silent p.S819S 0.18 TCGA-34-2609-01 3 169099086 169099086 A G MECOM Silent p.P112P 0.07 TCGA-34-2609-01 3 169664081 169664081 C A RP11-379K17.4 RNA 0.12 TCGA-34-2609-01 3 183700391 183700391 C A ABCC5 Missense_Mutation p.D283Y 0.26 deleterious(0) probably_damaging(1) TCGA-34-2609-01 3 193171998 193171998 G A ATP13A4 Missense_Mutation p.P640L 0.11 deleterious(0) probably_damaging(1) TCGA-34-2609-01 3 24006521 24006521 A G NR1D2 Silent p.E400E 0.14 TCGA-34-2609-01 3 36587887 36587887 C A STAC 3'UTR 0.26 TCGA-34-2609-01 3 4706970 4706970 G T ITPR1 Missense_Mutation p.R553M 0.20 deleterious(0) possibly_damaging(0.908) TCGA-34-2609-01 3 4706971 4706971 G T ITPR1 Missense_Mutation p.R553S 0.20 deleterious(0) possibly_damaging(0.846) TCGA-34-2609-01 3 50357383 50357383 C G HYAL2 Missense_Mutation p.E180Q 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-34-2609-01 3 8923088 8923088 C A RAD18 Missense_Mutation p.A481S 0.17 tolerated(0.41) benign(0.005) TCGA-34-2609-01 4 100197725 100197725 A G ADH1A 3'UTR 0.17 TCGA-34-2609-01 4 121957422 121957422 A G NDNF Silent p.C568C 0.08 TCGA-34-2609-01 4 15067978 15067978 C T CPEB2 Missense_Mutation p.R1027C 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-34-2609-01 4 156289965 156289965 C G MAP9 Splice_Site p.X161_splice 0.28 TCGA-34-2609-01 4 166978409 166978409 G T TLL1 Missense_Mutation p.Q598H 0.18 tolerated(0.07) benign(0.01) TCGA-34-2609-01 4 175649807 175649807 G A GLRA3 Missense_Mutation p.P104S 0.25 tolerated(0.08) possibly_damaging(0.63) TCGA-34-2609-01 4 17597117 17597117 C A LAP3 Silent p.I316I 0.17 TCGA-34-2609-01 4 52861914 52861914 A G LRRC66 Missense_Mutation p.F425S 0.20 deleterious(0) possibly_damaging(0.753) TCGA-34-2609-01 4 52861919 52861919 C A LRRC66 Missense_Mutation p.E423D 0.26 deleterious(0.04) benign(0.121) TCGA-34-2609-01 4 54231521 54231521 C G SCFD2 Missense_Mutation p.K196N 0.14 tolerated(0.07) benign(0.103) TCGA-34-2609-01 4 62452957 62452957 C G LPHN3 Missense_Mutation p.A23G 0.56 deleterious(0.03) probably_damaging(0.993) TCGA-34-2609-01 4 71396858 71396858 C T AMTN Missense_Mutation p.P154S 0.46 deleterious(0.02) probably_damaging(0.999) TCGA-34-2609-01 4 83788000 83788000 C A SEC31A Silent p.P386P 0.25 TCGA-34-2609-01 4 87622551 87622551 A T PTPN13 Silent p.G264G 0.09 TCGA-34-2609-01 5 140182634 140182635 GC - PCDHA3 Frame_Shift_Del p.R619Hfs*37 0.33 TCGA-34-2609-01 5 140214248 140214248 G C PCDHA7 Missense_Mutation p.E94Q 0.10 deleterious_low_confidence(0) possibly_damaging(0.551) TCGA-34-2609-01 5 176295878 176295878 C T UNC5A Missense_Mutation p.R212C 0.16 deleterious(0) probably_damaging(0.998) TCGA-34-2609-01 5 179193209 179193209 C T MAML1 Nonsense_Mutation p.Q400* 0.40 TCGA-34-2609-01 5 19473678 19473678 C A CDH18 Missense_Mutation p.R677M 0.26 deleterious(0) possibly_damaging(0.789) TCGA-34-2609-01 5 24487930 24487930 C A CDH10 Missense_Mutation p.A737S 0.17 deleterious(0.01) probably_damaging(0.983) TCGA-34-2609-01 5 24488151 24488151 C A CDH10 Missense_Mutation p.G663V 0.28 deleterious(0) probably_damaging(0.999) TCGA-34-2609-01 5 24511455 24511455 C A CDH10 Missense_Mutation p.G328V 0.27 deleterious(0) probably_damaging(0.999) TCGA-34-2609-01 5 31508765 31508765 C A DROSHA Missense_Mutation p.R517L 0.24 deleterious(0.01) possibly_damaging(0.853) TCGA-34-2609-01 5 35086362 35086362 C T PRLR Missense_Mutation p.G51R 0.17 deleterious(0) probably_damaging(0.994) TCGA-34-2609-01 5 35957494 35957494 C A UGT3A1 Missense_Mutation p.G291W 0.20 deleterious(0) probably_damaging(0.999) TCGA-34-2609-01 5 37170408 37170408 A G C5orf42 Missense_Mutation p.L2066P 0.25 deleterious(0) probably_damaging(0.995) TCGA-34-2609-01 5 40681241 40681243 AGA - PTGER4 In_Frame_Del p.K50del 0.09 TCGA-34-2609-01 5 45262622 45262622 C T HCN1 Missense_Mutation p.A692T 0.13 tolerated_low_confidence(0.15) benign(0.002) TCGA-34-2609-01 5 63256708 63256708 G A HTR1A Missense_Mutation p.A280V 0.10 tolerated(0.39) probably_damaging(0.972) TCGA-34-2609-01 5 64887634 64887634 G A TRIM23 Missense_Mutation p.R563W 0.07 deleterious(0) probably_damaging(0.996) TCGA-34-2609-01 5 96350785 96350785 G T LNPEP Missense_Mutation p.A788S 0.34 tolerated(0.38) benign(0.079) TCGA-34-2609-01 6 102483436 102483436 C G GRIK2 Missense_Mutation p.P769R 0.24 deleterious(0.03) probably_damaging(0.996) TCGA-34-2609-01 6 129674455 129674455 G T LAMA2 Missense_Mutation p.C1557F 0.27 deleterious(0) probably_damaging(1) TCGA-34-2609-01 6 130762616 130762616 C A TMEM200A Missense_Mutation p.S350Y 0.13 deleterious(0.02) possibly_damaging(0.525) TCGA-34-2609-01 6 132938990 132938990 A T TAAR2 Missense_Mutation p.Y119N 0.13 deleterious(0) benign(0.001) TCGA-34-2609-01 6 133078687 133078687 T A VNN2 Splice_Site p.X72_splice 0.19 TCGA-34-2609-01 6 144794898 144794898 G C UTRN Missense_Mutation p.D1037H 0.08 deleterious(0.05) probably_damaging(0.948) TCGA-34-2609-01 6 146350531 146350531 G A GRM1 5'UTR 0.39 TCGA-34-2609-01 6 146350662 146350662 G T GRM1 Silent p.G3G 0.19 TCGA-34-2609-01 6 147674496 147674496 A G STXBP5 Silent p.L764L 0.23 TCGA-34-2609-01 6 31752276 31752276 C T VARS Missense_Mutation p.D491N 0.25 deleterious(0.04) possibly_damaging(0.85) TCGA-34-2609-01 6 31752278 31752278 A G VARS Missense_Mutation p.V490A 0.25 deleterious(0) probably_damaging(1) TCGA-34-2609-01 6 32487339 32487339 C G HLA-DRB5 Missense_Mutation p.G154R 0.23 deleterious(0.03) probably_damaging(0.99) TCGA-34-2609-01 6 38941588 38941588 A G DNAH8 Missense_Mutation p.Q4009R 0.09 probably_damaging(0.986) TCGA-34-2609-01 6 4077611 4077611 C A FAM217A Missense_Mutation p.R13L 0.31 tolerated(0.2) benign(0.184) TCGA-34-2609-01 6 43550745 43550745 A G POLH Missense_Mutation p.I47V 0.44 deleterious(0.03) benign(0.232) TCGA-34-2609-01 6 52103568 52103568 G T IL17F Missense_Mutation p.R72S 0.18 tolerated(0.76) benign(0.013) TCGA-34-2609-01 6 52761659 52761659 T C GSTA3 Missense_Mutation p.K205R 0.13 deleterious(0.01) benign(0.137) TCGA-34-2609-01 6 54254826 54254826 C A TINAG 3'UTR 0.46 TCGA-34-2609-01 6 62604724 62604724 G T KHDRBS2 Missense_Mutation p.A209D 0.10 deleterious(0.04) benign(0.261) TCGA-34-2609-01 6 62604726 62604726 A T KHDRBS2 Silent p.G208G 0.10 TCGA-34-2609-01 6 70589467 70589467 T A COL19A1 Missense_Mutation p.L3H 0.08 tolerated_low_confidence(0.66) unknown(0) TCGA-34-2609-01 6 84233745 84233745 T A PRSS35 Missense_Mutation p.S195R 0.07 tolerated(0.57) benign(0) TCGA-34-2609-01 7 103061183 103061183 A C SLC26A5 Splice_Site p.X98_splice 0.29 TCGA-34-2609-01 7 103835617 103835617 A T ORC5 Missense_Mutation p.V176D 0.09 tolerated(0.07) benign(0.07) TCGA-34-2609-01 7 107431535 107431535 C T SLC26A3 Silent p.V176V 0.17 TCGA-34-2609-01 7 126883063 126883063 C A GRM8 Nonsense_Mutation p.E66* 0.08 TCGA-34-2609-01 7 134617812 134617812 G T CALD1 Nonsense_Mutation p.E98* 0.29 TCGA-34-2609-01 7 137304660 137304660 C A DGKI Missense_Mutation p.M301I 0.18 deleterious(0.04) benign(0.257) TCGA-34-2609-01 7 147600799 147600799 G T CNTNAP2 Silent p.A747A 0.29 TCGA-34-2609-01 7 150027623 150027623 G A ZBED6CL Missense_Mutation p.A44T 0.32 tolerated(0.24) benign(0.043) TCGA-34-2609-01 7 151880125 151880125 C A KMT2C Silent p.S1733S 0.38 TCGA-34-2609-01 7 2748847 2748847 T A AMZ1 Missense_Mutation p.F247Y 0.27 tolerated(0.05) benign(0.024) TCGA-34-2609-01 7 34125464 34125464 G A BMPER Missense_Mutation p.G502E 0.10 deleterious(0.01) probably_damaging(0.986) TCGA-34-2609-01 7 38725226 38725226 C T FAM183B Missense_Mutation p.S127N 0.16 tolerated(0.12) possibly_damaging(0.49) TCGA-34-2609-01 7 550562 550562 T C PDGFA Missense_Mutation p.T113A 0.25 deleterious(0.01) benign(0.12) TCGA-34-2609-01 7 86522351 86522351 C T KIAA1324L Silent p.K917K 0.30 TCGA-34-2609-01 8 100880597 100880597 G T VPS13B Missense_Mutation p.A3791S 0.25 deleterious(0) possibly_damaging(0.694) TCGA-34-2609-01 8 104928661 104928661 G C RIMS2 Missense_Mutation p.W644C 0.14 deleterious_low_confidence(0) probably_damaging(1) TCGA-34-2609-01 8 113267563 113267563 A T CSMD3 Missense_Mutation p.F3319Y 0.20 deleterious(0.01) benign(0.007) TCGA-34-2609-01 8 117868521 117868521 C A RAD21 Missense_Mutation p.G274V 0.26 deleterious(0.01) benign(0.009) TCGA-34-2609-01 8 143866646 143866646 G T LY6D Silent p.P126P 0.22 TCGA-34-2609-01 8 25745429 25745429 C T EBF2 Missense_Mutation p.V271I 0.15 tolerated(0.06) probably_damaging(0.938) TCGA-34-2609-01 8 37691331 37691331 G C GPR124 Missense_Mutation p.L474F 0.09 tolerated(0.13) possibly_damaging(0.756) TCGA-34-2609-01 8 48649975 48649975 G A CEBPD Silent p.R236R 0.42 TCGA-34-2609-01 8 55540161 55540161 C A RP1 Missense_Mutation p.S1240Y 0.11 deleterious(0) benign(0.401) TCGA-34-2609-01 8 77765006 77765006 C T ZFHX4 Missense_Mutation p.T1950I 0.19 benign(0) TCGA-34-2609-01 8 95884124 95884124 G T INTS8 Silent p.V809V 0.25 TCGA-34-2609-01 8 99129357 99129359 AGA - HRSP12 5'UTR 0.18 TCGA-34-2609-01 9 130551842 130551842 G T CDK9 3'UTR 0.15 TCGA-34-2609-01 9 139272204 139272204 G A SNAPC4 Missense_Mutation p.P1359S 0.25 deleterious(0.03) probably_damaging(0.997) TCGA-34-2609-01 9 21970899 21970899 A T CDKN2A Splice_Site p.X153_splice 0.39 TCGA-34-2609-01 9 37432082 37432082 C T GRHPR Missense_Mutation p.T271M 0.08 tolerated(0.19) probably_damaging(0.998) TCGA-34-2609-01 X 104478679 104478679 G C IL1RAPL2 Silent p.V178V 0.30 TCGA-34-2609-01 X 117786001 117786001 C T DOCK11 Silent p.F1552F 0.52 TCGA-34-2609-01 X 12736093 12736093 C A FRMPD4 Missense_Mutation p.Q1050K 0.26 tolerated_low_confidence(0.19) benign(0.024) TCGA-34-2609-01 X 129629410 129629410 C - RP1-274L7.1 Intron 0.34 TCGA-34-2609-01 X 130222667 130222667 G T ARHGAP36 Missense_Mutation p.G518C 0.50 deleterious(0.01) possibly_damaging(0.8) TCGA-34-2609-01 X 13767639 13767639 G T OFD1 Nonsense_Mutation p.E308* 0.25 TCGA-34-2609-01 X 138644110 138644110 C G F9 Silent p.T422T 0.64 TCGA-34-2609-01 X 23398361 23398361 C A PTCHD1 Silent p.V335V 0.19 TCGA-34-2609-01 X 30260892 30260892 T C MAGEB4 Missense_Mutation p.C214R 0.33 tolerated(1) benign(0.029) TCGA-34-2609-01 X 44929479 44929479 A - KDM6A Frame_Shift_Del p.E861Nfs*6 0.43 TCGA-34-2609-01 X 54784206 54784206 G T ITIH6 Silent p.I767I 0.22 TCGA-34-2609-01 X 84363245 84363245 T C SATL1 Missense_Mutation p.S244G 0.46 tolerated(0.58) benign(0.001) TCGA-34-2609-01 X 91131982 91131982 T A PCDH11X Missense_Mutation p.V248D 0.47 deleterious(0.03) possibly_damaging(0.853) TCGA-34-5231-01 10 103339394 103339394 G C POLL Missense_Mutation p.S515C 0.41 deleterious(0) probably_damaging(0.999) TCGA-34-5231-01 10 115389450 115389450 A G NRAP Missense_Mutation p.L646P 0.20 deleterious(0) probably_damaging(0.999) TCGA-34-5231-01 10 118318738 118318738 A G PNLIP Missense_Mutation p.T335A 0.38 tolerated(0.07) benign(0.005) TCGA-34-5231-01 10 118891688 118891688 G T VAX1 3'Flank 0.17 TCGA-34-5231-01 10 124896747 124896747 G A HMX3 Missense_Mutation p.A192T 0.64 tolerated(0.38) benign(0.003) TCGA-34-5231-01 10 134258757 134258757 T A C10orf91 Missense_Mutation p.W2R 0.30 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-34-5231-01 10 25887462 25887462 G A GPR158 Silent p.K969K 0.74 TCGA-34-5231-01 10 34666941 34666942 - C PARD3 Frame_Shift_Ins p.A498Gfs*9 0.46 TCGA-34-5231-01 10 43316033 43316033 G T BMS1 Missense_Mutation p.R949S 0.23 deleterious(0) probably_damaging(1) TCGA-34-5231-01 10 50856650 50856650 A T CHAT Missense_Mutation p.H460L 0.75 tolerated(0.1) benign(0.022) TCGA-34-5231-01 10 50947856 50947856 G T OGDHL Missense_Mutation p.P724T 0.38 deleterious(0) probably_damaging(1) TCGA-34-5231-01 10 54074370 54074370 C A DKK1 Missense_Mutation p.A59E 0.34 tolerated(0.28) benign(0.1) TCGA-34-5231-01 10 55568769 55568769 G T PCDH15 Missense_Mutation p.P615T 0.56 deleterious_low_confidence(0.02) unknown(0) TCGA-34-5231-01 10 55892724 55892724 T A PCDH15 Missense_Mutation p.N610Y 0.30 deleterious(0) probably_damaging(0.997) TCGA-34-5231-01 10 61011164 61011164 C G FAM13C Intron 0.50 TCGA-34-5231-01 10 61012727 61012727 G A FAM13C Missense_Mutation p.P455L 0.23 tolerated(0.13) benign(0.018) TCGA-34-5231-01 10 62648181 62648181 G C RHOBTB1 Silent p.L415L 0.32 TCGA-34-5231-01 10 64960338 64960338 C A JMJD1C Missense_Mutation p.G1725V 0.45 tolerated(0.06) probably_damaging(1) TCGA-34-5231-01 10 69407234 69407234 G T CTNNA3 Missense_Mutation p.P13H 0.23 deleterious(0) possibly_damaging(0.612) TCGA-34-5231-01 10 72195571 72195571 G T NODAL Missense_Mutation p.T121K 0.42 tolerated(0.66) benign(0.032) TCGA-34-5231-01 10 75886051 75886051 C A AP3M1 Missense_Mutation p.G289V 0.17 deleterious(0) probably_damaging(0.936) TCGA-34-5231-01 10 85992085 85992085 G T LRIT1 Silent p.P490P 0.50 TCGA-34-5231-01 10 91465176 91465176 C T KIF20B Missense_Mutation p.S42F 0.50 deleterious(0) probably_damaging(0.997) TCGA-34-5231-01 10 93008287 93008287 A G PCGF5 Missense_Mutation p.I79V 0.52 tolerated(1) benign(0.259) TCGA-34-5231-01 10 94824182 94824182 C T CYP26C1 Silent p.A250A 0.40 TCGA-34-5231-01 10 95790939 95790939 C A PLCE1 Silent p.R46R 0.48 TCGA-34-5231-01 11 106810751 106810751 A C GUCY1A2 Missense_Mutation p.F214C 0.41 tolerated(0.19) benign(0.008) TCGA-34-5231-01 11 1082714 1082714 A T MUC2 Missense_Mutation p.N655Y 0.47 probably_damaging(0.996) TCGA-34-5231-01 11 111637063 111637063 C A PPP2R1B Missense_Mutation p.G8V 0.50 deleterious_low_confidence(0.01) benign(0.037) TCGA-34-5231-01 11 114453646 114453646 A T NXPE4 Missense_Mutation p.L65Q 0.37 tolerated(0.12) benign(0.003) TCGA-34-5231-01 11 114568910 114568910 C G NXPE2 Missense_Mutation p.D92E 0.34 deleterious(0.02) benign(0.367) TCGA-34-5231-01 11 117077854 117077854 G T PCSK7 Silent p.G603G 0.20 TCGA-34-5231-01 11 118774021 118774021 C A BCL9L Missense_Mutation p.G225W 0.56 probably_damaging(0.921) TCGA-34-5231-01 11 119058019 119058019 T G PDZD3 Missense_Mutation p.L124R 0.42 deleterious(0) probably_damaging(0.997) TCGA-34-5231-01 11 119216232 119216232 T A MFRP Missense_Mutation p.H180L 0.38 tolerated(0.73) benign(0.015) TCGA-34-5231-01 11 119599294 119599294 C A PVRL1 5'UTR 0.41 TCGA-34-5231-01 11 123676282 123676282 G T OR6M1 Missense_Mutation p.P259H 0.22 deleterious(0) probably_damaging(0.982) TCGA-34-5231-01 11 123676283 123676283 G T OR6M1 Missense_Mutation p.P259T 0.23 tolerated(0.06) possibly_damaging(0.702) TCGA-34-5231-01 11 123777210 123777210 G T OR8D4 Missense_Mutation p.Q24H 0.29 deleterious(0) possibly_damaging(0.815) TCGA-34-5231-01 11 123810488 123810488 G T OR4D5 Silent p.L55L 0.44 TCGA-34-5231-01 11 123887041 123887041 T G OR10G4 Missense_Mutation p.C254G 0.29 tolerated(0.25) benign(0) TCGA-34-5231-01 11 124134923 124134923 G C OR8G5 Silent p.L67L 0.24 TCGA-34-5231-01 11 124294301 124294301 A T OR8B4 Missense_Mutation p.M156K 0.39 deleterious_low_confidence(0) benign(0.174) TCGA-34-5231-01 11 1281295 1281295 C G MUC5B Missense_Mutation p.P5635A 0.77 unknown(0) TCGA-34-5231-01 11 128359270 128359270 G A ETS1 Silent p.C150C 0.49 TCGA-34-5231-01 11 129784610 129784610 G A PRDM10 Nonsense_Mutation p.Q948* 0.04 TCGA-34-5231-01 11 133792072 133792072 G A IGSF9B Missense_Mutation p.P776L 0.19 deleterious(0) probably_damaging(0.999) TCGA-34-5231-01 11 1578659 1578659 G C DUSP8 Missense_Mutation p.P323A 0.57 tolerated(0.6) benign(0.339) TCGA-34-5231-01 11 22747905 22747905 A G GAS2 Missense_Mutation p.N112S 0.55 deleterious(0) probably_damaging(0.994) TCGA-34-5231-01 11 22770666 22770666 G T GAS2 Missense_Mutation p.R158S 0.60 deleterious(0.01) benign(0.41) TCGA-34-5231-01 11 25004678 25004678 C T LUZP2 Nonsense_Mutation p.Q202* 0.64 TCGA-34-5231-01 11 44081390 44081390 A G ACCSL Missense_Mutation p.M543V 0.60 deleterious(0.03) benign(0.284) TCGA-34-5231-01 11 44639800 44639800 G T CD82 Missense_Mutation p.C176F 0.48 deleterious(0) probably_damaging(1) TCGA-34-5231-01 11 44639801 44639801 C T CD82 Silent p.C176C 0.48 TCGA-34-5231-01 11 44639802 44639802 G T CD82 Nonsense_Mutation p.E177* 0.48 TCGA-34-5231-01 11 47463443 47463443 C T RAPSN Missense_Mutation p.D241N 0.44 deleterious(0) probably_damaging(1) TCGA-34-5231-01 11 4843409 4843409 T G OR51F2 Missense_Mutation p.F265C 0.56 deleterious(0) probably_damaging(0.999) TCGA-34-5231-01 11 4903564 4903564 G A OR51T1 Silent p.V172V 0.63 TCGA-34-5231-01 11 49974079 49974079 C G OR4C13 Missense_Mutation p.N35K 0.66 deleterious_low_confidence(0) benign(0.001) TCGA-34-5231-01 11 5020636 5020636 G T OR51L1 Missense_Mutation p.V142L 0.67 tolerated(0.61) benign(0.104) TCGA-34-5231-01 11 5411314 5411314 C A OR51M1 Missense_Mutation p.S229Y 0.62 deleterious(0) probably_damaging(0.999) TCGA-34-5231-01 11 55065667 55065667 T A TRIM51HP RNA 0.23 TCGA-34-5231-01 11 5530345 5530345 A G UBQLN3 Silent p.R148R 0.62 TCGA-34-5231-01 11 5537581 5537581 T A UBQLNL Missense_Mutation p.T31S 0.61 tolerated(0.3) benign(0.037) TCGA-34-5231-01 11 55418726 55418726 T A OR4S2 Missense_Mutation p.M116K 0.80 deleterious(0) probably_damaging(0.993) TCGA-34-5231-01 11 55563067 55563067 C A OR5D14 Silent p.P12P 0.37 TCGA-34-5231-01 11 55587917 55587917 C A OR5D18 Missense_Mutation p.T271K 0.33 tolerated(0.16) benign(0.213) TCGA-34-5231-01 11 55606495 55606495 G T OR5D16 Nonsense_Mutation p.E90* 0.30 TCGA-34-5231-01 11 57971379 57971379 G T OR1S2 Missense_Mutation p.P92H 0.27 deleterious(0) probably_damaging(0.999) TCGA-34-5231-01 11 58170130 58170130 C - OR5B3 Frame_Shift_Del p.T252Lfs*32 0.27 TCGA-34-5231-01 11 59245336 59245336 C T OR4D10 Missense_Mutation p.T145I 0.33 tolerated(0.49) benign(0.001) TCGA-34-5231-01 11 59828660 59828660 A T MS4A3 Silent p.A9A 0.46 TCGA-34-5231-01 11 59857232 59857232 G A MS4A2 Missense_Mutation p.A42T 0.54 tolerated(0.16) benign(0.036) TCGA-34-5231-01 11 60059718 60059718 C A MS4A4A Missense_Mutation p.T21K 0.40 deleterious(0.01) possibly_damaging(0.632) TCGA-34-5231-01 11 61120432 61120432 G T DAK 3'Flank 0.32 TCGA-34-5231-01 11 61583728 61583728 A G FADS1 Intron 0.38 TCGA-34-5231-01 11 6232161 6232161 C A C11orf42 Silent p.P297P 0.13 TCGA-34-5231-01 11 62472874 62472874 G A BSCL2 Silent p.T101T 0.33 TCGA-34-5231-01 11 62529083 62529083 G T POLR2G 5'UTR 0.40 TCGA-34-5231-01 11 65635425 65635425 G T EFEMP2 Missense_Mutation p.D359E 0.28 deleterious(0.05) benign(0.173) TCGA-34-5231-01 11 65635437 65635437 G C EFEMP2 Missense_Mutation p.S355R 0.53 deleterious(0) possibly_damaging(0.895) TCGA-34-5231-01 11 66568167 66568167 G C C11orf80 Missense_Mutation p.G258A 0.22 deleterious(0.03) benign(0.329) TCGA-34-5231-01 11 66618314 66618314 C A PC Silent p.L768L 0.23 TCGA-34-5231-01 11 67379393 67379393 G A NDUFV1 Missense_Mutation p.R369H 0.31 deleterious_low_confidence(0) probably_damaging(1) TCGA-34-5231-01 11 67413302 67413302 T A ACY3 Missense_Mutation p.Q98L 0.32 deleterious(0.03) possibly_damaging(0.545) TCGA-34-5231-01 11 71209527 71209527 C G NADSYN1 Missense_Mutation p.L675V 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-34-5231-01 11 77386218 77386218 T C RSF1 Missense_Mutation p.D1142G 0.47 tolerated(0.13) possibly_damaging(0.772) TCGA-34-5231-01 11 7950101 7950101 C A OR10A6 Missense_Mutation p.V37L 0.55 tolerated(0.14) benign(0.008) TCGA-34-5231-01 11 85692259 85692259 C - PICALM Frame_Shift_Del p.W564* 0.37 TCGA-34-5231-01 11 8948685 8948685 C G C11orf16 Missense_Mutation p.A121P 0.45 deleterious(0.04) possibly_damaging(0.735) TCGA-34-5231-01 11 92568145 92568145 C A FAT3 Silent p.V3327V 0.49 TCGA-34-5231-01 12 100453045 100453045 T G UHRF1BP1L Missense_Mutation p.E670D 0.31 tolerated(1) benign(0.001) TCGA-34-5231-01 12 100811884 100811884 C A SLC17A8 Missense_Mutation p.L459I 0.37 tolerated(0.28) probably_damaging(0.999) TCGA-34-5231-01 12 101555755 101555755 T A SLC5A8 Missense_Mutation p.T543S 0.32 tolerated(0.08) possibly_damaging(0.45) TCGA-34-5231-01 12 105558084 105558084 A T KIAA1033 Missense_Mutation p.Q1118L 0.33 deleterious(0.03) benign(0.169) TCGA-34-5231-01 12 109577292 109577292 G T ACACB Missense_Mutation p.D28Y 0.37 deleterious_low_confidence(0) benign(0.219) TCGA-34-5231-01 12 110788167 110788167 T C ATP2A2 3'Flank 0.39 TCGA-34-5231-01 12 112081928 112081928 C A BRAP 3'UTR 0.39 TCGA-34-5231-01 12 112499079 112499079 C T NAA25 Silent p.T421T 0.26 TCGA-34-5231-01 12 112622317 112622317 C G HECTD4 Missense_Mutation p.A3339P 0.40 possibly_damaging(0.713) TCGA-34-5231-01 12 120135581 120135581 G C CIT Nonsense_Mutation p.S1922* 0.36 TCGA-34-5231-01 12 122995669 122995669 T C RSRC2 Silent p.Q264Q 0.55 TCGA-34-5231-01 12 124497330 124497330 C A ZNF664 Missense_Mutation p.S213R 0.14 tolerated(0.14) benign(0.307) TCGA-34-5231-01 12 130847651 130847652 - T PIWIL1 Frame_Shift_Ins p.L721Ffs*9 0.26 TCGA-34-5231-01 12 133210913 133210913 C T POLE Missense_Mutation p.D1955N 0.36 tolerated(0.32) benign(0) TCGA-34-5231-01 12 133360686 133360686 C A GOLGA3 Intron 0.27 TCGA-34-5231-01 12 13768452 13768452 C T GRIN2B Missense_Mutation p.G492E 0.31 deleterious(0) probably_damaging(1) TCGA-34-5231-01 12 15073866 15073866 C T ERP27 Silent p.V150V 0.38 TCGA-34-5231-01 12 21008009 21008009 T A LST3 Silent p.G44G 0.39 TCGA-34-5231-01 12 21172204 21172204 T C SLCO1B7 Silent p.F36F 0.40 TCGA-34-5231-01 12 21200140 21200140 A G SLCO1B7 Missense_Mutation p.N328S 0.18 deleterious(0.04) benign(0.251) TCGA-34-5231-01 12 24736362 24736362 C A LINC00477 RNA 0.50 TCGA-34-5231-01 12 248089 248089 A T IQSEC3 Silent p.A520A 0.29 TCGA-34-5231-01 12 2930910 2930910 A C ITFG2 Silent p.S300S 0.45 TCGA-34-5231-01 12 29631788 29631788 G C OVCH1 Nonsense_Mutation p.S350* 0.34 TCGA-34-5231-01 12 31542367 31542367 G T DENND5B Missense_Mutation p.Q1178K 0.33 tolerated(0.68) benign(0.004) TCGA-34-5231-01 12 32902909 32902909 A G YARS2 Silent p.T412T 0.14 TCGA-34-5231-01 12 39695313 39695313 C G KIF21A Missense_Mutation p.V1634L 0.45 deleterious(0) benign(0.021) TCGA-34-5231-01 12 39734805 39734805 C A KIF21A Silent p.L671L 0.42 TCGA-34-5231-01 12 40076501 40076501 T A C12orf40 Missense_Mutation p.Y259N 0.32 deleterious(0) possibly_damaging(0.505) TCGA-34-5231-01 12 41966418 41966418 G C PDZRN4 Missense_Mutation p.D613H 0.36 deleterious(0.02) possibly_damaging(0.867) TCGA-34-5231-01 12 46321729 46321729 T C SCAF11 Silent p.T585T 0.40 TCGA-34-5231-01 12 47629446 47629446 C T PCED1B Silent p.S200S 0.32 TCGA-34-5231-01 12 48369843 48369843 C A COL2A1 Missense_Mutation p.G1167V 0.40 unknown(0) TCGA-34-5231-01 12 48537939 48537939 A T PFKM Missense_Mutation p.Q735L 0.40 deleterious(0) possibly_damaging(0.576) TCGA-34-5231-01 12 49110307 49110307 C T CCNT1 Missense_Mutation p.R51H 0.37 deleterious(0) probably_damaging(0.991) TCGA-34-5231-01 12 5020530 5020530 C G KCNA1 5'UTR 0.38 TCGA-34-5231-01 12 5603648 5603648 A G NTF3 Missense_Mutation p.T103A 0.32 tolerated(0.6) benign(0.01) TCGA-34-5231-01 12 56235003 56235003 G C MMP19 Missense_Mutation p.S64C 0.43 deleterious(0.01) probably_damaging(0.963) TCGA-34-5231-01 12 57966387 57966387 G C KIF5A Missense_Mutation p.E532Q 0.34 deleterious(0) possibly_damaging(0.598) TCGA-34-5231-01 12 58009617 58009617 C G ARHGEF25 Intron 0.34 TCGA-34-5231-01 12 59276650 59276650 C A LRIG3 Splice_Site p.X494_splice 0.35 TCGA-34-5231-01 12 5939612 5939612 G T ANO2 Missense_Mutation p.R273S 0.37 deleterious(0.02) possibly_damaging(0.48) TCGA-34-5231-01 12 63544586 63544586 G T AVPR1A Missense_Mutation p.P11T 0.48 tolerated_low_confidence(0.05) benign(0.031) TCGA-34-5231-01 12 69968729 69968729 C T FRS2 Silent p.P507P 0.34 TCGA-34-5231-01 12 78513299 78513299 C A NAV3 Missense_Mutation p.A1108E 0.36 deleterious(0.04) probably_damaging(0.948) TCGA-34-5231-01 12 78520960 78520960 A G NAV3 Missense_Mutation p.R1418G 0.43 deleterious(0) probably_damaging(0.999) TCGA-34-5231-01 12 78582544 78582544 T A NAV3 Silent p.T1992T 0.40 TCGA-34-5231-01 12 81741318 81741318 C A PPFIA2 Missense_Mutation p.M742I 0.42 tolerated(0.06) possibly_damaging(0.767) TCGA-34-5231-01 12 86198752 86198753 TG - RASSF9 Nonsense_Mutation p.Y345* 0.12 TCGA-34-5231-01 12 88482973 88482973 T C CEP290 Missense_Mutation p.T1289A 0.37 possibly_damaging(0.542) TCGA-34-5231-01 12 9000180 9000180 A G A2ML1 Silent p.P573P 0.44 TCGA-34-5231-01 13 100635301 100635301 C T ZIC2 Missense_Mutation p.T328I 0.29 deleterious(0) possibly_damaging(0.908) TCGA-34-5231-01 13 110437489 110437489 A T IRS2 Missense_Mutation p.S304R 0.40 deleterious(0) probably_damaging(0.986) TCGA-34-5231-01 13 111928137 111928137 C G ARHGEF7 Intron 0.27 TCGA-34-5231-01 13 113826358 113826358 A T PROZ Missense_Mutation p.H403L 0.24 tolerated(0.19) benign(0.008) TCGA-34-5231-01 13 19748255 19748255 G T TUBA3C Missense_Mutation p.D367E 0.26 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-34-5231-01 13 22084201 22084201 G A MICU2 Nonsense_Mutation p.Q235* 0.30 TCGA-34-5231-01 13 26156084 26156084 C G ATP8A2 Missense_Mutation p.A712G 0.20 deleterious(0) probably_damaging(0.984) TCGA-34-5231-01 13 28537332 28537332 G C CDX2 Missense_Mutation p.L288V 0.20 tolerated(0.11) unknown(0) TCGA-34-5231-01 13 28611325 28611325 T C FLT3 Missense_Mutation p.R436G 0.27 deleterious(0.03) benign(0.097) TCGA-34-5231-01 13 28866715 28866715 G A PAN3 3'Flank 0.42 TCGA-34-5231-01 13 32911598 32911598 G A BRCA2 Missense_Mutation p.E1036K 0.37 deleterious(0.01) probably_damaging(0.994) TCGA-34-5231-01 13 38143436 38143436 C T POSTN Splice_Site p.X811_splice 0.23 TCGA-34-5231-01 13 38237720 38237720 T C TRPC4 Missense_Mutation p.I507M 0.29 deleterious(0) probably_damaging(0.923) TCGA-34-5231-01 13 39450500 39450500 T A FREM2 Missense_Mutation p.L2842H 0.20 deleterious(0) possibly_damaging(0.647) TCGA-34-5231-01 13 53616220 53616220 G T OLFM4 Missense_Mutation p.G178V 0.21 tolerated(0.41) benign(0) TCGA-34-5231-01 13 58207599 58207599 G T PCDH17 Missense_Mutation p.G307C 0.26 deleterious(0) probably_damaging(0.988) TCGA-34-5231-01 13 61986403 61986403 C A PCDH20 Missense_Mutation p.R610I 0.32 tolerated(0.45) benign(0.143) TCGA-34-5231-01 13 67801278 67801278 G T PCDH9 Missense_Mutation p.T432N 0.33 deleterious(0) probably_damaging(0.958) TCGA-34-5231-01 13 77657256 77657256 T C MYCBP2 Silent p.L3611L 0.30 TCGA-34-5231-01 13 79175664 79175664 G T POU4F1 Silent p.S382S 0.31 TCGA-34-5231-01 13 96743641 96743641 T C HS6ST3 Silent p.C175C 0.39 TCGA-34-5231-01 14 105419199 105419199 C A AHNAK2 Silent p.V863V 0.50 TCGA-34-5231-01 14 106641769 106641769 T G IGHV1-18 Missense_Mutation p.T49P 0.30 deleterious(0.02) benign(0.061) TCGA-34-5231-01 14 20585592 20585592 C - OR4K17 Frame_Shift_Del p.H10Mfs*3 0.36 TCGA-34-5231-01 14 20612101 20612101 G T OR4N5 Silent p.L69L 0.27 TCGA-34-5231-01 14 20978871 20978871 C A RNASE10 Missense_Mutation p.P81T 0.14 deleterious(0.02) possibly_damaging(0.459) TCGA-34-5231-01 14 20978873 20978873 A G RNASE10 Silent p.P81P 0.14 TCGA-34-5231-01 14 21623325 21623325 T A OR5AU1 Missense_Mutation p.K287M 0.26 deleterious(0) probably_damaging(1) TCGA-34-5231-01 14 21899141 21899141 T A CHD8 Missense_Mutation p.N221I 0.49 deleterious_low_confidence(0.01) possibly_damaging(0.906) TCGA-34-5231-01 14 21944828 21944828 C A TOX4 5'Flank 0.17 TCGA-34-5231-01 14 21990366 21990366 C A SALL2 3'UTR 0.29 TCGA-34-5231-01 14 22266031 22266031 C T TRAV8-1 Missense_Mutation p.T105I 0.11 deleterious(0) benign(0.138) TCGA-34-5231-01 14 22476375 22476375 C A TRAV19 Nonsense_Mutation p.S102* 0.32 TCGA-34-5231-01 14 22772226 22772226 A C TRAV39 Missense_Mutation p.Y40S 0.57 tolerated(0.34) benign(0.008) TCGA-34-5231-01 14 22772228 22772228 T G TRAV39 Missense_Mutation p.C41G 0.55 deleterious(0.01) probably_damaging(1) TCGA-34-5231-01 14 24040570 24040570 G C JPH4 Missense_Mutation p.S457C 0.17 deleterious(0) possibly_damaging(0.62) TCGA-34-5231-01 14 32560921 32560922 TT - ARHGAP5 Frame_Shift_Del p.L350Afs*7 0.12 TCGA-34-5231-01 14 33684439 33684439 G A NPAS3 Silent p.R64R 0.53 TCGA-34-5231-01 14 50177095 50177095 G C KLHDC1 Missense_Mutation p.D134H 0.52 deleterious(0.01) possibly_damaging(0.653) TCGA-34-5231-01 14 53066842 53066842 A G GPR137C Missense_Mutation p.H167R 0.51 tolerated(0.69) probably_damaging(0.923) TCGA-34-5231-01 14 57948311 57948311 A G C14orf105 Missense_Mutation p.M154T 0.22 deleterious(0) possibly_damaging(0.795) TCGA-34-5231-01 14 62536405 62536405 C G SYT16 Missense_Mutation p.S203C 0.37 deleterious(0.01) possibly_damaging(0.886) TCGA-34-5231-01 14 64568746 64568746 G T SYNE2 Nonsense_Mutation p.G4160* 0.19 TCGA-34-5231-01 14 64676782 64676782 G T SYNE2 Missense_Mutation p.E6221D 0.41 benign(0.393) TCGA-34-5231-01 14 64989312 64989313 - AAC ZBTB1 In_Frame_Ins p.E364_P365insQ 0.25 TCGA-34-5231-01 14 73958889 73958889 G T HEATR4 Intron 0.43 TCGA-34-5231-01 14 74960508 74960508 G C ISCA2 Missense_Mutation p.A11P 0.71 tolerated(0.25) benign(0.143) TCGA-34-5231-01 14 79432644 79432644 C T NRXN3 Missense_Mutation p.T518I 0.47 tolerated(0.17) probably_damaging(0.936) TCGA-34-5231-01 14 90744615 90744615 C T NRDE2 3'UTR 0.18 TCGA-34-5231-01 14 94772415 94772415 G T SERPINA6 Nonsense_Mutation p.S342* 0.19 TCGA-34-5231-01 14 94914504 94914504 G C SERPINA11 Missense_Mutation p.T203R 0.25 deleterious(0) probably_damaging(0.961) TCGA-34-5231-01 14 95905372 95905372 G A SYNE3 Missense_Mutation p.R792C 0.26 deleterious(0.02) benign(0.004) TCGA-34-5231-01 15 101024834 101024834 C A CERS3 Nonsense_Mutation p.E110* 0.47 TCGA-34-5231-01 15 23932317 23932317 C A NDN Missense_Mutation p.E16D 0.52 tolerated_low_confidence(0.09) benign(0.002) TCGA-34-5231-01 15 24922999 24922999 C A NPAP1 Missense_Mutation p.P662H 0.42 deleterious(0) probably_damaging(0.987) TCGA-34-5231-01 15 25307573 25307573 C A SNORD116-5 RNA 0.34 TCGA-34-5231-01 15 25448251 25448251 G T SNORD115-20 5'Flank 0.46 TCGA-34-5231-01 15 25449397 25449397 G T SNORD115-20 5'Flank 0.38 TCGA-34-5231-01 15 27193257 27193257 C A GABRA5 Silent p.I422I 0.21 TCGA-34-5231-01 15 28211898 28211898 G A OCA2 Missense_Mutation p.P525L 0.27 tolerated(0.53) possibly_damaging(0.905) TCGA-34-5231-01 15 28436333 28436333 C A HERC2 Missense_Mutation p.V2837L 0.39 benign(0.195) TCGA-34-5231-01 15 31776442 31776442 C A OTUD7A Missense_Mutation p.W612C 0.44 tolerated(0.26) probably_damaging(0.997) TCGA-34-5231-01 15 33988492 33988492 G T RYR3 Silent p.L1978L 0.43 TCGA-34-5231-01 15 42749426 42749426 T A ZNF106 5'UTR 0.12 TCGA-34-5231-01 15 42837280 42837280 C G LRRC57 Missense_Mutation p.D225H 0.27 deleterious(0) possibly_damaging(0.504) TCGA-34-5231-01 15 42837400 42837400 C T LRRC57 Missense_Mutation p.E185K 0.39 deleterious(0) probably_damaging(0.998) TCGA-34-5231-01 15 43990941 43990941 T C CKMT1A Silent p.L372L 0.41 TCGA-34-5231-01 15 45564584 45564584 T A SLC28A2 Nonsense_Mutation p.C580* 0.33 TCGA-34-5231-01 15 48450377 48450377 T C MYEF2 Missense_Mutation p.K306E 0.29 deleterious(0) probably_damaging(0.982) TCGA-34-5231-01 15 48807697 48807697 T C FBN1 Missense_Mutation p.Y452C 0.15 possibly_damaging(0.701) TCGA-34-5231-01 15 56968994 56968994 T C ZNF280D Silent p.S428S 0.39 TCGA-34-5231-01 15 62945428 62945428 G - TLN2 Frame_Shift_Del p.G145Afs*19 0.37 TCGA-34-5231-01 15 64027022 64027022 T C HERC1 Silent p.G849G 0.48 TCGA-34-5231-01 15 65425357 65425357 C G PDCD7 Missense_Mutation p.E255Q 0.38 tolerated(0.11) possibly_damaging(0.677) TCGA-34-5231-01 15 67687727 67687727 C A IQCH Missense_Mutation p.S577R 0.37 deleterious(0) possibly_damaging(0.842) TCGA-34-5231-01 15 67835662 67835662 C G MAP2K5 5'UTR 0.38 TCGA-34-5231-01 15 68468068 68468068 A T PIAS1 Missense_Mutation p.E421D 0.28 deleterious(0.03) benign(0.001) TCGA-34-5231-01 15 69238585 69238585 C T SPESP1 Nonsense_Mutation p.Q238* 0.28 TCGA-34-5231-01 15 74043539 74043539 C A C15orf59 5'UTR 0.23 TCGA-34-5231-01 15 75704038 75704038 G - SIN3A Frame_Shift_Del p.P268Hfs*19 0.36 TCGA-34-5231-01 15 78805758 78805758 G T HYKK Missense_Mutation p.V110L 0.44 tolerated(0.63) benign(0.009) TCGA-34-5231-01 15 80215270 80215270 C T C15orf37 Missense_Mutation p.P52L 0.32 possibly_damaging(0.851) TCGA-34-5231-01 15 83358139 83358139 C G AP3B2 Missense_Mutation p.R60S 0.28 deleterious(0) possibly_damaging(0.688) TCGA-34-5231-01 15 84611828 84611828 G A ADAMTSL3 Nonsense_Mutation p.W828* 0.39 TCGA-34-5231-01 15 89400078 89400078 C T ACAN Missense_Mutation p.T1421I 0.37 tolerated(0.44) benign(0.05) TCGA-34-5231-01 15 90349349 90349349 C A ANPEP Missense_Mutation p.V156L 0.37 tolerated(0.69) benign(0.1) TCGA-34-5231-01 15 98513248 98513248 A G ARRDC4 Missense_Mutation p.T340A 0.16 tolerated(0.84) benign(0.002) TCGA-34-5231-01 16 1561113 1561113 G C IFT140 Silent p.P1407P 0.13 TCGA-34-5231-01 16 19483417 19483417 T A TMC5 Missense_Mutation p.L597Q 0.48 deleterious(0) probably_damaging(1) TCGA-34-5231-01 16 20429497 20429497 G T ACSM5 Silent p.G107G 0.25 TCGA-34-5231-01 16 20552086 20552086 C A ACSM2B Missense_Mutation p.A507S 0.47 deleterious(0) possibly_damaging(0.758) TCGA-34-5231-01 16 23497395 23497395 C G GGA2 Missense_Mutation p.E247Q 0.21 tolerated(0.16) probably_damaging(0.993) TCGA-34-5231-01 16 24373168 24373168 G C CACNG3 Missense_Mutation p.R311P 0.46 deleterious(0) probably_damaging(0.999) TCGA-34-5231-01 16 28970122 28970122 A G NFATC2IP Missense_Mutation p.T311A 0.51 tolerated(0.16) benign(0.077) TCGA-34-5231-01 16 30545881 30545881 G A ZNF747 Silent p.A40A 0.30 TCGA-34-5231-01 16 30976331 30976331 A T SETD1A Missense_Mutation p.Q423L 0.48 benign(0.403) TCGA-34-5231-01 16 31335990 31335990 G C ITGAM Missense_Mutation p.V727L 0.19 tolerated(0.31) benign(0.069) TCGA-34-5231-01 16 31885182 31885182 C T ZNF267 5'UTR 0.25 TCGA-34-5231-01 16 3434809 3434809 C G ZSCAN32 Missense_Mutation p.W83S 0.49 tolerated(0.15) benign(0.019) TCGA-34-5231-01 16 4312391 4312391 G T TFAP4 Silent p.I96I 0.22 TCGA-34-5231-01 16 48149463 48149463 A G ABCC12 Missense_Mutation p.Y618H 0.33 deleterious(0) probably_damaging(1) TCGA-34-5231-01 16 53473056 53473056 G C RBL2 Missense_Mutation p.Q123H 0.25 deleterious(0) probably_damaging(0.91) TCGA-34-5231-01 16 56673870 56673870 A G MT1A 3'UTR 0.37 TCGA-34-5231-01 16 601631 601631 G A CAPN15 Missense_Mutation p.G771D 0.18 deleterious(0) probably_damaging(1) TCGA-34-5231-01 16 69973306 69973306 A G WWP2 Missense_Mutation p.S835G 0.39 deleterious(0) probably_damaging(0.998) TCGA-34-5231-01 16 76573654 76573654 G T CNTNAP4 Nonsense_Mutation p.E1014* 0.29 TCGA-34-5231-01 16 77228906 77228906 G T MON1B Missense_Mutation p.G384W 0.44 deleterious(0.02) possibly_damaging(0.762) TCGA-34-5231-01 16 77232211 77232212 GG T MON1B 3'UTR 0.30 TCGA-34-5231-01 16 83933124 83933124 C A MLYCD Silent p.A125A 0.18 TCGA-34-5231-01 16 84270496 84270496 C T KCNG4 Missense_Mutation p.R199H 0.26 tolerated(0.11) probably_damaging(0.97) TCGA-34-5231-01 16 87636784 87636784 A T JPH3 Missense_Mutation p.D11V 0.31 deleterious(0) probably_damaging(0.999) TCGA-34-5231-01 17 11666833 11666833 A G DNAH9 Missense_Mutation p.T2358A 0.68 benign(0.002) TCGA-34-5231-01 17 12626289 12626289 C G MYOCD Missense_Mutation p.L127V 0.58 tolerated(0.06) benign(0.023) TCGA-34-5231-01 17 19265919 19265919 C A B9D1 5'UTR 0.74 TCGA-34-5231-01 17 26110057 26110057 C A NOS2 Silent p.L181L 0.33 TCGA-34-5231-01 17 26732154 26732154 G T SLC46A1 Missense_Mutation p.S187R 0.28 deleterious(0) benign(0.226) TCGA-34-5231-01 17 27010298 27010298 G A SUPT6H Missense_Mutation p.A631T 0.46 tolerated(0.44) benign(0.014) TCGA-34-5231-01 17 27086441 27086441 G A FAM222B Missense_Mutation p.P179L 0.32 deleterious(0.02) benign(0.003) TCGA-34-5231-01 17 30520215 30520215 A G RHOT1 Missense_Mutation p.R234G 0.41 tolerated(0.22) benign(0.288) TCGA-34-5231-01 17 3195614 3195614 A G OR3A1 Missense_Mutation p.L88P 0.62 deleterious(0) benign(0.172) TCGA-34-5231-01 17 33504141 33504141 G T UNC45B Missense_Mutation p.G713W 0.43 deleterious(0) probably_damaging(0.998) TCGA-34-5231-01 17 35913393 35913393 T C SYNRG Missense_Mutation p.K811R 0.43 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-34-5231-01 17 38938327 38938327 G C KRT27 Missense_Mutation p.P140R 0.34 tolerated(0.22) possibly_damaging(0.831) TCGA-34-5231-01 17 39406049 39406049 C A KRTAP9-4 Missense_Mutation p.P26H 0.27 deleterious(0) unknown(0) TCGA-34-5231-01 17 39767163 39767163 C A KRT16 Silent p.T334T 0.47 TCGA-34-5231-01 17 45299068 45299068 G T MYL4 Missense_Mutation p.D112Y 0.42 deleterious(0) probably_damaging(0.997) TCGA-34-5231-01 17 5009781 5009781 C A ZNF232 Nonsense_Mutation p.E225* 0.64 TCGA-34-5231-01 17 5072240 5072240 T G USP6 Missense_Mutation p.L1136R 0.64 tolerated_low_confidence(0.53) benign(0.008) TCGA-34-5231-01 17 54554865 54554865 A G ANKFN1 Missense_Mutation p.H600R 0.44 deleterious(0) benign(0.36) TCGA-34-5231-01 17 60004014 60004014 T C INTS2 Missense_Mutation p.T6A 0.26 deleterious_low_confidence(0) benign(0.01) TCGA-34-5231-01 17 61957775 61957775 C T GH2 3'UTR 0.38 TCGA-34-5231-01 17 67186506 67186506 A T ABCA10 Missense_Mutation p.D708E 0.34 tolerated(0.15) benign(0.008) TCGA-34-5231-01 17 68171777 68171777 C T KCNJ2 Silent p.A199A 0.46 TCGA-34-5231-01 17 7193680 7193680 G A YBX2 Missense_Mutation p.R212W 0.62 deleterious(0) possibly_damaging(0.689) TCGA-34-5231-01 17 72351440 72351440 C G KIF19 Missense_Mutation p.R996G 0.29 deleterious_low_confidence(0.03) benign(0.009) TCGA-34-5231-01 17 72845955 72845955 G T GRIN2C Missense_Mutation p.R537S 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-34-5231-01 17 72923879 72923879 G A OTOP2 Missense_Mutation p.R210H 0.37 tolerated(0.27) benign(0.001) TCGA-34-5231-01 17 73560510 73560510 G A LLGL2 Missense_Mutation p.D320N 0.45 tolerated(0.21) benign(0.002) TCGA-34-5231-01 17 7578177 7578177 C T TP53 Silent p.E224E 0.72 TCGA-34-5231-01 17 7798755 7798755 A T CHD3 Silent p.P593P 0.64 TCGA-34-5231-01 17 79205420 79205420 C T ENTHD2 Missense_Mutation p.R258H 0.38 tolerated(0.2) benign(0.006) TCGA-34-5231-01 17 8753096 8753096 G A PIK3R6 Intron 0.65 TCGA-34-5231-01 18 13056424 13056424 C T CEP192 Nonsense_Mutation p.Q1279* 0.29 TCGA-34-5231-01 18 13885023 13885023 C A MC2R Missense_Mutation p.M165I 0.35 tolerated(0.12) benign(0.003) TCGA-34-5231-01 18 22806327 22806327 A G ZNF521 Missense_Mutation p.Y519H 0.06 tolerated(0.39) probably_damaging(0.914) TCGA-34-5231-01 18 22806627 22806627 C A ZNF521 Missense_Mutation p.A419S 0.06 tolerated(0.07) probably_damaging(0.91) TCGA-34-5231-01 18 22806745 22806745 C G ZNF521 Missense_Mutation p.K379N 0.06 tolerated(0.48) possibly_damaging(0.835) TCGA-34-5231-01 18 22806872 22806872 G A ZNF521 Missense_Mutation p.S337L 0.09 tolerated(0.11) benign(0.012) TCGA-34-5231-01 18 24436197 24436197 C G AQP4 Missense_Mutation p.G317A 0.07 deleterious_low_confidence(0.05) benign(0.069) TCGA-34-5231-01 18 50705329 50705329 C A DCC Intron 0.63 TCGA-34-5231-01 18 5438068 5438068 G C EPB41L3 Missense_Mutation p.P191A 0.22 deleterious(0) probably_damaging(0.999) TCGA-34-5231-01 18 5969551 5969551 C A L3MBTL4 Silent p.V494V 0.47 TCGA-34-5231-01 18 6873568 6873568 G T ARHGAP28 Missense_Mutation p.G213V 0.37 tolerated(0.39) benign(0.175) TCGA-34-5231-01 18 72343094 72343094 T A ZNF407 Missense_Mutation p.I40K 0.59 tolerated_low_confidence(0.88) benign(0.002) TCGA-34-5231-01 18 74154101 74154101 T A ZNF516 Missense_Mutation p.S304C 0.54 deleterious(0) possibly_damaging(0.907) TCGA-34-5231-01 18 74962644 74962644 G T GALR1 Missense_Mutation p.G47V 0.76 deleterious(0) probably_damaging(1) TCGA-34-5231-01 18 76754897 76754897 G C SALL3 Missense_Mutation p.R969T 0.41 deleterious(0.02) possibly_damaging(0.776) TCGA-34-5231-01 18 76953201 76953201 G T ATP9B Missense_Mutation p.A298S 0.58 tolerated(0.22) possibly_damaging(0.525) TCGA-34-5231-01 19 10084623 10084623 C A COL5A3 Missense_Mutation p.R1177L 0.31 probably_damaging(0.984) TCGA-34-5231-01 19 1073249 1073249 G A HMHA1 Missense_Mutation p.E191K 0.31 deleterious(0) probably_damaging(0.956) TCGA-34-5231-01 19 11036415 11036415 C A YIPF2 Missense_Mutation p.R105L 0.07 tolerated(1) benign(0.007) TCGA-34-5231-01 19 14141727 14141727 G C RLN3 Silent p.G132G 0.22 TCGA-34-5231-01 19 15648391 15648391 G T CYP4F22 Missense_Mutation p.R156L 0.38 deleterious(0) probably_damaging(0.998) TCGA-34-5231-01 19 16799109 16799117 CGGCCATGC - TMEM38A In_Frame_Del p.M278_A280del 0.51 TCGA-34-5231-01 19 17086940 17086940 T G CPAMD8 Missense_Mutation p.N641H 0.26 deleterious(0.05) possibly_damaging(0.749) TCGA-34-5231-01 19 18304774 18304774 A G MPV17L2 Silent p.P96P 0.28 TCGA-34-5231-01 19 18561352 18561352 C A ELL Missense_Mutation p.R467L 0.58 tolerated(0.27) benign(0.039) TCGA-34-5231-01 19 18961004 18961004 C T UPF1 Silent p.L194L 0.32 TCGA-34-5231-01 19 20748571 20748571 G T ZNF737 5'Flank 0.48 TCGA-34-5231-01 19 20806867 20806867 G A ZNF626 3'UTR 0.64 TCGA-34-5231-01 19 21132690 21132690 A C ZNF85 Missense_Mutation p.E457A 0.21 deleterious(0.02) possibly_damaging(0.85) TCGA-34-5231-01 19 22940721 22940721 G T ZNF99 Missense_Mutation p.L664I 0.31 deleterious(0.02) probably_damaging(0.98) TCGA-34-5231-01 19 23542322 23542322 C G ZNF91 Missense_Mutation p.K1153N 0.24 deleterious(0.01) possibly_damaging(0.856) TCGA-34-5231-01 19 2757453 2757453 C A SGTA Missense_Mutation p.G277V 0.54 deleterious(0) probably_damaging(1) TCGA-34-5231-01 19 3055691 3055691 C A AES Missense_Mutation p.A157S 0.08 tolerated_low_confidence(0.08) possibly_damaging(0.524) TCGA-34-5231-01 19 31769848 31769848 A C TSHZ3 Missense_Mutation p.F284C 0.35 deleterious(0) probably_damaging(1) TCGA-34-5231-01 19 33493764 33493764 C - RHPN2 Frame_Shift_Del p.N302Mfs*7 0.19 TCGA-34-5231-01 19 35981310 35981310 A G KRTDAP Missense_Mutation p.L12P 0.39 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-34-5231-01 19 36218436 36218436 G C KMT2B Silent p.L1405L 0.21 TCGA-34-5231-01 19 36223339 36223339 G A KMT2B Silent p.P1963P 0.08 TCGA-34-5231-01 19 38127064 38127064 C A ZFP30 Missense_Mutation p.R126S 0.30 tolerated(0.55) benign(0.001) TCGA-34-5231-01 19 40541700 40541700 T C ZNF780B Missense_Mutation p.M356V 0.46 deleterious(0.01) benign(0) TCGA-34-5231-01 19 40904309 40904309 C T PRX Intron 0.25 TCGA-34-5231-01 19 41242989 41242989 C G ITPKC Missense_Mutation p.I591M 0.33 deleterious(0) possibly_damaging(0.835) TCGA-34-5231-01 19 42879930 42879930 G T MEGF8 Missense_Mutation p.R2447L 0.35 tolerated(0.17) possibly_damaging(0.579) TCGA-34-5231-01 19 440869 440869 C A SHC2 Missense_Mutation p.V178L 0.32 deleterious(0.02) benign(0.183) TCGA-34-5231-01 19 44503340 44503340 G C ZNF155 3'Flank 0.40 TCGA-34-5231-01 19 45854705 45854705 C - ERCC2 3'UTR 0.28 TCGA-34-5231-01 19 47422255 47422255 A G ARHGAP35 Missense_Mutation p.H108R 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-34-5231-01 19 47968997 47968997 C A SLC8A2 Missense_Mutation p.G222C 0.39 deleterious(0) probably_damaging(1) TCGA-34-5231-01 19 51135922 51135922 C T SYT3 Missense_Mutation p.D99N 0.40 tolerated(0.19) benign(0.05) TCGA-34-5231-01 19 52856995 52856995 G T ZNF610 Missense_Mutation p.D42Y 0.30 deleterious(0) possibly_damaging(0.671) TCGA-34-5231-01 19 52941112 52941112 G T ZNF534 Missense_Mutation p.K146N 0.29 tolerated(1) benign(0.002) TCGA-34-5231-01 19 53086642 53086642 G T ZNF701 Missense_Mutation p.G510C 0.40 deleterious(0.01) possibly_damaging(0.686) TCGA-34-5231-01 19 53625806 53625806 C T ZNF415 5'UTR 0.41 TCGA-34-5231-01 19 53911449 53911449 C G ZNF765 Missense_Mutation p.S214C 0.35 deleterious(0.03) probably_damaging(0.95) TCGA-34-5231-01 19 54392977 54392977 T C PRKCG Missense_Mutation p.L124P 0.46 deleterious(0) probably_damaging(0.961) TCGA-34-5231-01 19 54613499 54613499 G T TFPT Missense_Mutation p.N96K 0.30 deleterious(0.05) benign(0.028) TCGA-34-5231-01 19 54657344 54657344 G T CNOT3 Intron 0.30 TCGA-34-5231-01 19 54849937 54849938 - T LILRA4 Frame_Shift_Ins p.P29Tfs*15 0.34 TCGA-34-5231-01 19 55044296 55044296 G A KIR3DX1 Silent p.A23A 0.40 TCGA-34-5231-01 19 55417567 55417567 C A NCR1 Missense_Mutation p.L8M 0.27 deleterious(0) possibly_damaging(0.622) TCGA-34-5231-01 19 56243388 56243388 T C NLRP9 Silent p.P603P 0.49 TCGA-34-5231-01 19 56243389 56243389 G T NLRP9 Missense_Mutation p.P603Q 0.48 tolerated(0.45) benign(0.045) TCGA-34-5231-01 19 56487502 56487502 G A NLRP8 Silent p.L903L 0.33 TCGA-34-5231-01 19 5664436 5664436 G C SAFB Missense_Mutation p.E774Q 0.31 deleterious(0.02) unknown(0) TCGA-34-5231-01 19 57723037 57723037 G T ZNF264 Missense_Mutation p.G191V 0.31 tolerated(0.39) benign(0.003) TCGA-34-5231-01 19 58189754 58189754 C G ZSCAN4 Missense_Mutation p.I261M 0.27 deleterious(0.04) benign(0.213) TCGA-34-5231-01 19 58639432 58639432 T C ZNF329 Missense_Mutation p.E480G 0.37 deleterious(0) probably_damaging(0.994) TCGA-34-5231-01 19 5867626 5867626 G T FUT5 Silent p.S37S 0.26 TCGA-34-5231-01 19 621340 621340 C G POLRMT Silent p.A786A 0.51 TCGA-34-5231-01 19 621342 621342 C T POLRMT Missense_Mutation p.A786T 0.50 deleterious(0) probably_damaging(0.998) TCGA-34-5231-01 19 8922260 8922260 C T ZNF558 Silent p.R302R 0.38 TCGA-34-5231-01 19 9057646 9057646 T C MUC16 Missense_Mutation p.I9934V 0.33 unknown(0) TCGA-34-5231-01 1 103404590 103404590 C A COL11A1 Splice_Site p.X1146_splice 0.60 TCGA-34-5231-01 1 110612956 110612956 A G ALX3 Splice_Site p.X93_splice 0.65 TCGA-34-5231-01 1 114354958 114354958 C T RSBN1 Missense_Mutation p.R26Q 0.77 deleterious_low_confidence(0) benign(0.417) TCGA-34-5231-01 1 120050171 120050171 G A HSD3B1 Silent p.V24V 0.67 TCGA-34-5231-01 1 120612002 120612002 C G NOTCH2 Missense_Mutation p.A7P 0.15 tolerated_low_confidence(0.26) unknown(0) TCGA-34-5231-01 1 120927180 120927180 A T FCGR1B Missense_Mutation p.L267Q 0.49 deleterious_low_confidence(0.05) benign(0.009) TCGA-34-5231-01 1 12463963 12463963 A T VPS13D Missense_Mutation p.K3989N 0.63 probably_damaging(0.991) TCGA-34-5231-01 1 12941971 12941971 G A PRAMEF4 Silent p.P193P 0.42 TCGA-34-5231-01 1 13036476 13036476 G C PRAMEF22 Missense_Mutation p.C183S 0.40 deleterious(0.02) probably_damaging(0.974) TCGA-34-5231-01 1 142803529 142803529 T C RP11-423O2.5 RNA 0.15 TCGA-34-5231-01 1 152659444 152659444 C T LCE2B Missense_Mutation p.P42L 0.39 deleterious_low_confidence(0) unknown(0) TCGA-34-5231-01 1 152681816 152681816 G T LCE4A Missense_Mutation p.G89C 0.34 deleterious_low_confidence(0) unknown(0) TCGA-34-5231-01 1 153661941 153661941 C G NPR1 Missense_Mutation p.L901V 0.29 deleterious(0) probably_damaging(0.998) TCGA-34-5231-01 1 154296240 154296240 G A AQP10 Missense_Mutation p.R222H 0.17 deleterious(0) probably_damaging(0.995) TCGA-34-5231-01 1 154841808 154841808 G A KCNN3 Silent p.F211F 0.37 TCGA-34-5231-01 1 156144709 156144709 A G SEMA4A Missense_Mutation p.N471S 0.28 deleterious(0.05) benign(0.086) TCGA-34-5231-01 1 156616841 156616841 C T BCAN Missense_Mutation p.P114S 0.35 tolerated(0.09) probably_damaging(1) TCGA-34-5231-01 1 157772365 157772365 C A FCRL1 Missense_Mutation p.A137S 0.40 tolerated(0.1) possibly_damaging(0.734) TCGA-34-5231-01 1 157803197 157803197 T C CD5L Missense_Mutation p.E275G 0.42 tolerated(0.22) possibly_damaging(0.486) TCGA-34-5231-01 1 158298786 158298786 C G CD1B Missense_Mutation p.G302A 0.35 tolerated(0.15) benign(0.019) TCGA-34-5231-01 1 158724842 158724842 G T OR6K6 Silent p.V79V 0.37 TCGA-34-5231-01 1 159752142 159752142 C T DUSP23 3'UTR 0.37 TCGA-34-5231-01 1 160062359 160062359 C A IGSF8 Missense_Mutation p.W480L 0.39 deleterious(0.01) probably_damaging(0.993) TCGA-34-5231-01 1 160207000 160207000 G C DCAF8 Missense_Mutation p.S295C 0.36 deleterious(0.03) benign(0.114) TCGA-34-5231-01 1 161130911 161130911 G T USP21 Missense_Mutation p.G161W 0.38 deleterious_low_confidence(0) possibly_damaging(0.868) TCGA-34-5231-01 1 161332211 161332211 G T SDHC Silent p.L166L 0.37 TCGA-34-5231-01 1 161600845 161600845 C T FCGR3B Missense_Mutation p.V50I 0.36 tolerated(0.08) benign(0.148) TCGA-34-5231-01 1 166829463 166829463 G A TADA1 Silent p.L218L 0.31 TCGA-34-5231-01 1 167023424 167023424 C A GPA33 3'UTR 0.25 TCGA-34-5231-01 1 167095787 167095787 G T DUSP27 Silent p.S473S 0.39 TCGA-34-5231-01 1 169562848 169562848 T C SELP Missense_Mutation p.Q801R 0.32 tolerated(0.5) benign(0.003) TCGA-34-5231-01 1 173834799 173834799 C A ZBTB37 5'Flank 0.33 TCGA-34-5231-01 1 174274239 174274239 C T RABGAP1L Missense_Mutation p.S480L 0.55 tolerated(0.08) benign(0.022) TCGA-34-5231-01 1 17603149 17603149 C G PADI3 Silent p.P481P 0.75 TCGA-34-5231-01 1 176564578 176564578 G A PAPPA2 Missense_Mutation p.R613H 0.42 tolerated(0.08) probably_damaging(0.995) TCGA-34-5231-01 1 176762746 176762746 C A PAPPA2 Missense_Mutation p.L1691I 0.39 deleterious(0) probably_damaging(0.997) TCGA-34-5231-01 1 176857303 176857303 G T ASTN1 Nonsense_Mutation p.S993* 0.47 TCGA-34-5231-01 1 179306981 179306981 A T SOAT1 Missense_Mutation p.R113S 0.49 tolerated(0.08) possibly_damaging(0.792) TCGA-34-5231-01 1 180003020 180003020 C G CEP350 Missense_Mutation p.S1250C 0.31 possibly_damaging(0.67) TCGA-34-5231-01 1 186645691 186645691 C A PTGS2 Missense_Mutation p.R293L 0.31 deleterious(0.02) probably_damaging(0.997) TCGA-34-5231-01 1 192316463 192316463 C A RGS21 Missense_Mutation p.P11Q 0.31 deleterious(0.01) benign(0.005) TCGA-34-5231-01 1 193028383 193028383 C A UCHL5 Missense_Mutation p.G3V 0.21 deleterious(0.03) benign(0.389) TCGA-34-5231-01 1 196642292 196642292 G A CFH Silent p.Q81Q 0.30 TCGA-34-5231-01 1 202850137 202850137 T A RABIF Missense_Mutation p.Y114F 0.44 tolerated(0.06) probably_damaging(0.942) TCGA-34-5231-01 1 204124089 204124089 T A REN 3'UTR 0.49 TCGA-34-5231-01 1 204379712 204379712 C A PPP1R15B Silent p.P276P 0.41 TCGA-34-5231-01 1 204949567 204949567 C T NFASC Missense_Mutation p.T749M 0.26 tolerated(0.08) probably_damaging(0.99) TCGA-34-5231-01 1 205116794 205116794 C T DSTYK Silent p.L894L 0.35 TCGA-34-5231-01 1 205116822 205116822 A G DSTYK Missense_Mutation p.M885T 0.30 deleterious(0) probably_damaging(0.979) TCGA-34-5231-01 1 207648284 207648284 C T CR2 Silent p.L813L 0.41 TCGA-34-5231-01 1 209968732 209968732 C A IRF6 Missense_Mutation p.K137N 0.43 tolerated(0.45) benign(0.002) TCGA-34-5231-01 1 211533358 211533358 T A TRAF5 Nonsense_Mutation p.C161* 0.38 TCGA-34-5231-01 1 212002483 212002483 C T LPGAT1 Silent p.K52K 0.39 TCGA-34-5231-01 1 214811305 214811305 T G CENPF Missense_Mutation p.C515G 0.39 benign(0.017) TCGA-34-5231-01 1 215792322 215792322 C T KCTD3 Missense_Mutation p.R553C 0.12 deleterious(0) probably_damaging(0.998) TCGA-34-5231-01 1 216051223 216051223 C T USH2A Splice_Site p.X2853_splice 0.31 TCGA-34-5231-01 1 21880524 21880524 C G ALPL 5'UTR 0.63 TCGA-34-5231-01 1 220440526 220440526 G C RAB3GAP2 Intron 0.34 TCGA-34-5231-01 1 22079070 22079070 C T USP48 Silent p.V205V 0.69 TCGA-34-5231-01 1 222791476 222791476 C T MIA3 Silent p.L8L 0.31 TCGA-34-5231-01 1 222803650 222803650 T C MIA3 Missense_Mutation p.Y1030H 0.14 tolerated(0.08) probably_damaging(0.987) TCGA-34-5231-01 1 227239592 227239592 T A CDC42BPA Intron 0.36 TCGA-34-5231-01 1 228238464 228238464 C T WNT3A Missense_Mutation p.R141C 0.24 deleterious(0.04) possibly_damaging(0.901) TCGA-34-5231-01 1 230845930 230845930 A G AGT Missense_Mutation p.F223L 0.26 deleterious(0.04) probably_damaging(0.993) TCGA-34-5231-01 1 231344849 231344849 G T TRIM67 Missense_Mutation p.R659L 0.20 deleterious(0) probably_damaging(0.998) TCGA-34-5231-01 1 235602204 235602204 A T TBCE Missense_Mutation p.T413S 0.57 tolerated(0.17) benign(0.001) TCGA-34-5231-01 1 237580424 237580424 G A RYR2 Splice_Site p.X283_splice 0.60 TCGA-34-5231-01 1 237777346 237777346 G T RYR2 Missense_Mutation p.D1640Y 0.25 possibly_damaging(0.794) TCGA-34-5231-01 1 237796898 237796898 G T RYR2 Missense_Mutation p.M2192I 0.22 possibly_damaging(0.897) TCGA-34-5231-01 1 240978014 240978014 A T RGS7 Splice_Site p.X282_splice 0.21 TCGA-34-5231-01 1 247588866 247588866 C A NLRP3 Silent p.V707V 0.59 TCGA-34-5231-01 1 247901948 247901948 T A OR14K1 Nonsense_Mutation p.L11* 0.28 TCGA-34-5231-01 1 248004713 248004713 C T OR11L1 Missense_Mutation p.M162I 0.31 deleterious(0.04) benign(0.335) TCGA-34-5231-01 1 248201836 248201836 G T OR2L2 Missense_Mutation p.K89N 0.23 tolerated(0.11) benign(0.003) TCGA-34-5231-01 1 248367125 248367125 T A OR2M3 Nonsense_Mutation p.Y252* 0.59 TCGA-34-5231-01 1 248550956 248550956 G C OR2T6 Missense_Mutation p.G16A 0.18 deleterious(0) probably_damaging(0.977) TCGA-34-5231-01 1 248790217 248790217 G T OR2T11 Silent p.I71I 0.55 TCGA-34-5231-01 1 248802026 248802026 G T OR2T35 Missense_Mutation p.F178L 0.30 deleterious(0.01) probably_damaging(0.994) TCGA-34-5231-01 1 248845215 248845215 T C OR14I1 Missense_Mutation p.R131G 0.31 tolerated(0.24) benign(0) TCGA-34-5231-01 1 25944443 25944443 T A MAN1C1 Missense_Mutation p.L52H 0.19 deleterious(0.01) possibly_damaging(0.798) TCGA-34-5231-01 1 33087382 33087382 G T ZBTB8OS 3'UTR 0.70 TCGA-34-5231-01 1 33237497 33237497 C T KIAA1522 Missense_Mutation p.S906L 0.63 tolerated(0.11) benign(0.362) TCGA-34-5231-01 1 34033226 34033226 G T CSMD2 Missense_Mutation p.H2760N 0.75 tolerated(0.23) benign(0.098) TCGA-34-5231-01 1 36932199 36932199 C T CSF3R Missense_Mutation p.G784D 0.61 tolerated(0.1) benign(0.16) TCGA-34-5231-01 1 48708225 48708225 G T SLC5A9 Missense_Mutation p.G617W 0.67 deleterious(0.04) benign(0.024) TCGA-34-5231-01 1 62739203 62739203 C A KANK4 Missense_Mutation p.G525C 0.67 deleterious(0.03) benign(0.036) TCGA-34-5231-01 1 66075935 66075935 G C LEPR Missense_Mutation p.G651R 0.66 deleterious(0.02) benign(0.197) TCGA-34-5231-01 1 67147875 67147875 C A SGIP1 Missense_Mutation p.Q380K 0.64 tolerated_low_confidence(0.08) benign(0.037) TCGA-34-5231-01 1 71873131 71873132 - T NEGR1 Frame_Shift_Ins p.*355Ifs*14 0.49 TCGA-34-5231-01 1 7913107 7913107 G A UTS2 Intron 0.64 TCGA-34-5231-01 1 89652768 89652768 C T GBP4 Silent p.Q476Q 0.72 TCGA-34-5231-01 1 92946204 92946204 C A GFI1 Missense_Mutation p.R247L 0.57 tolerated(0.11) benign(0.162) TCGA-34-5231-01 20 17581618 17581618 G A DSTN Missense_Mutation p.C80Y 0.42 deleterious(0.03) possibly_damaging(0.644) TCGA-34-5231-01 20 18522958 18522958 C A SEC23B Missense_Mutation p.Q475K 0.29 tolerated(0.49) benign(0.405) TCGA-34-5231-01 20 20270957 20270957 T C C20orf26 Silent p.P1046P 0.38 TCGA-34-5231-01 20 23545589 23545589 T A CST9L Missense_Mutation p.H147L 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.612) TCGA-34-5231-01 20 23856706 23856706 C A CST5 3'UTR 0.52 TCGA-34-5231-01 20 25439071 25439071 C A NINL Missense_Mutation p.R1264L 0.36 tolerated(0.35) benign(0.029) TCGA-34-5231-01 20 29847261 29847261 A T DEFB115 Splice_Site p.X32_splice 0.40 TCGA-34-5231-01 20 31044086 31044086 G A C20orf112 Silent p.A74A 0.42 TCGA-34-5231-01 20 31375187 31375187 G T DNMT3B Missense_Mutation p.S195I 0.44 deleterious(0.04) possibly_damaging(0.772) TCGA-34-5231-01 20 31998117 31998117 G C SNTA1 Missense_Mutation p.S354C 0.54 deleterious(0.04) benign(0.376) TCGA-34-5231-01 20 35060493 35060493 C T DLGAP4 Missense_Mutation p.P125S 0.33 tolerated(0.08) benign(0.228) TCGA-34-5231-01 20 3670649 3670649 G C SIGLEC1 Silent p.V1618V 0.26 TCGA-34-5231-01 20 37580850 37580850 C G FAM83D Missense_Mutation p.S512C 0.50 tolerated(0.07) probably_damaging(1) TCGA-34-5231-01 20 42331428 42331428 G A MYBL2 Missense_Mutation p.R417H 0.20 deleterious(0) probably_damaging(0.915) TCGA-34-5231-01 20 42683132 42683132 C T TOX2 Missense_Mutation p.S282F 0.19 deleterious(0) probably_damaging(0.994) TCGA-34-5231-01 20 43836129 43836129 C T SEMG1 Missense_Mutation p.S64F 0.40 tolerated(0.69) probably_damaging(0.998) TCGA-34-5231-01 20 61937407 61937407 G C COL20A1 Intron 0.36 TCGA-34-5231-01 20 62121863 62121863 G T EEF1A2 Missense_Mutation p.P333Q 0.62 deleterious_low_confidence(0) probably_damaging(1) TCGA-34-5231-01 20 62680534 62680534 G A SOX18 Silent p.N112N 0.39 TCGA-34-5231-01 20 8737759 8737759 G T PLCB1 Missense_Mutation p.V864L 0.29 tolerated(0.84) benign(0) TCGA-34-5231-01 21 27078377 27078377 C A JAM2 Missense_Mutation p.Q262K 0.31 deleterious(0.05) possibly_damaging(0.813) TCGA-34-5231-01 21 38137351 38137351 C A HLCS Missense_Mutation p.A548S 0.43 deleterious(0) probably_damaging(0.986) TCGA-34-5231-01 21 38519833 38519833 C - TTC3 Frame_Shift_Del p.I650Ffs*17 0.34 TCGA-34-5231-01 21 47851652 47851652 A T PCNT Silent p.S2758S 0.52 TCGA-34-5231-01 21 48019325 48019325 A G S100B Missense_Mutation p.F77S 0.35 deleterious(0) possibly_damaging(0.844) TCGA-34-5231-01 22 16279269 16279269 A T POTEH Missense_Mutation p.H318Q 0.12 tolerated(0.21) possibly_damaging(0.493) TCGA-34-5231-01 22 16287908 16287908 G T POTEH 5'UTR 0.13 TCGA-34-5231-01 22 17589968 17589968 G A IL17RA Missense_Mutation p.R620Q 0.27 tolerated(1) benign(0.001) TCGA-34-5231-01 22 22893284 22893284 C T PRAME Silent p.L83L 0.22 TCGA-34-5231-01 22 24629879 24629879 G A GGT5 Silent p.G89G 0.39 TCGA-34-5231-01 22 30975748 30975748 T A PES1 Silent p.G448G 0.32 TCGA-34-5231-01 22 31536282 31536282 C - PLA2G3 Frame_Shift_Del p.G20Afs*14 0.38 TCGA-34-5231-01 22 37480798 37480798 G A TMPRSS6 Missense_Mutation p.S361L 0.29 deleterious(0.05) possibly_damaging(0.638) TCGA-34-5231-01 22 38130422 38130422 C A TRIOBP Missense_Mutation p.A1360D 0.41 deleterious_low_confidence(0) possibly_damaging(0.462) TCGA-34-5231-01 22 38320668 38320668 G A MICALL1 Silent p.G342G 0.41 TCGA-34-5231-01 22 41911921 41911921 G T ACO2 Missense_Mutation p.G279C 0.41 deleterious_low_confidence(0) probably_damaging(1) TCGA-34-5231-01 22 46749686 46749686 C A TRMU Silent p.G265G 0.35 TCGA-34-5231-01 22 47069575 47069575 G C GRAMD4 Silent p.T416T 0.34 TCGA-34-5231-01 22 51117847 51117847 C G SHANK3 Silent p.L292L 0.29 TCGA-34-5231-01 2 105687796 105687796 G A MRPS9 Missense_Mutation p.S114N 0.52 deleterious(0) probably_damaging(0.999) TCGA-34-5231-01 2 110325422 110325422 G T SEPT10 Missense_Mutation p.D244E 0.19 tolerated(1) benign(0.004) TCGA-34-5231-01 2 11925077 11925077 C T LPIN1 Missense_Mutation p.P524L 0.42 deleterious(0.01) possibly_damaging(0.842) TCGA-34-5231-01 2 119699815 119699815 G T MARCO 5'UTR 0.67 TCGA-34-5231-01 2 128886667 128886667 G T UGGT1 Missense_Mutation p.G431C 0.25 deleterious(0.01) possibly_damaging(0.664) TCGA-34-5231-01 2 132020950 132020950 A C POTEE Missense_Mutation p.E641A 0.60 deleterious_low_confidence(0) possibly_damaging(0.678) TCGA-34-5231-01 2 133540003 133540003 C A NCKAP5 Missense_Mutation p.A1461S 0.17 tolerated(0.3) benign(0.392) TCGA-34-5231-01 2 135745090 135745090 G T MAP3K19 Missense_Mutation p.P451H 0.55 deleterious(0.02) benign(0.059) TCGA-34-5231-01 2 138421125 138421125 C A THSD7B Missense_Mutation p.S1547Y 0.50 tolerated(0.25) unknown(0) TCGA-34-5231-01 2 141267566 141267566 G - LRP1B Frame_Shift_Del p.R2777Dfs*83 0.25 TCGA-34-5231-01 2 159954259 159954259 A G TANC1 Missense_Mutation p.K58E 0.50 tolerated_low_confidence(0.23) benign(0.405) TCGA-34-5231-01 2 162735758 162735758 G A SLC4A10 Missense_Mutation p.V356I 0.49 deleterious(0.04) possibly_damaging(0.669) TCGA-34-5231-01 2 162760591 162760591 T A SLC4A10 Missense_Mutation p.L507Q 0.18 deleterious(0) probably_damaging(1) TCGA-34-5231-01 2 163003945 163003945 A C GCG Missense_Mutation p.F58V 0.47 tolerated(0.05) benign(0.192) TCGA-34-5231-01 2 163051246 163051246 G A FAP Missense_Mutation p.P472L 0.25 deleterious(0) probably_damaging(1) TCGA-34-5231-01 2 163216741 163216741 T C GCA Silent p.T214T 0.40 TCGA-34-5231-01 2 1639256 1639256 C G PXDN Missense_Mutation p.C1415S 0.41 deleterious(0) probably_damaging(0.938) TCGA-34-5231-01 2 166020188 166020188 C T SCN3A Missense_Mutation p.V212I 0.20 tolerated(0.39) probably_damaging(0.927) TCGA-34-5231-01 2 166172106 166172106 C G SCN2A Missense_Mutation p.N503K 0.18 tolerated(0.21) probably_damaging(0.999) TCGA-34-5231-01 2 166848358 166848358 A G SCN1A Silent p.Y1809Y 0.22 TCGA-34-5231-01 2 179500826 179500826 G T TTN Silent p.G13824G 0.20 TCGA-34-5231-01 2 179527749 179527749 G T TTN Missense_Mutation p.P12245Q 0.49 TCGA-34-5231-01 2 179600527 179600527 C G TTN Missense_Mutation p.L4882F 0.30 TCGA-34-5231-01 2 179605786 179605786 C T TTN Silent p.K4058K 0.23 TCGA-34-5231-01 2 179635938 179635938 C A TTN Missense_Mutation p.A2706S 0.17 TCGA-34-5231-01 2 179648829 179648829 G C TTN Missense_Mutation p.R915G 0.42 TCGA-34-5231-01 2 183943829 183943829 T C DUSP19 Silent p.Y56Y 0.47 TCGA-34-5231-01 2 185803426 185803426 T A ZNF804A Silent p.T1101T 0.21 TCGA-34-5231-01 2 198950611 198950611 G C PLCL1 Missense_Mutation p.E790D 0.51 deleterious(0.01) probably_damaging(0.99) TCGA-34-5231-01 2 201722523 201722523 G C CLK1 Missense_Mutation p.D292E 0.30 tolerated(0.12) possibly_damaging(0.821) TCGA-34-5231-01 2 202550668 202550668 A T MPP4 Missense_Mutation p.C156S 0.22 tolerated(0.5) benign(0.024) TCGA-34-5231-01 2 203084829 203084829 C - SUMO1 Frame_Shift_Del p.E5Rfs*34 0.37 TCGA-34-5231-01 2 203167649 203167649 G A NOP58 Missense_Mutation p.E470K 0.50 tolerated(0.2) possibly_damaging(0.636) TCGA-34-5231-01 2 204066306 204066306 G C NBEAL1 Missense_Mutation p.E2398Q 0.24 tolerated(0.11) possibly_damaging(0.529) TCGA-34-5231-01 2 209045987 209045987 T C C2orf80 Silent p.R83R 0.22 TCGA-34-5231-01 2 21228501 21228501 G C APOB Missense_Mutation p.P3747A 0.19 probably_damaging(0.998) TCGA-34-5231-01 2 212426717 212426717 G A ERBB4 Missense_Mutation p.P800S 0.39 deleterious(0) probably_damaging(0.992) TCGA-34-5231-01 2 215274882 215274882 C A SPAG16 Missense_Mutation p.A580E 0.22 deleterious(0) probably_damaging(0.988) TCGA-34-5231-01 2 215440412 215440412 A T VWC2L Silent p.A179A 0.31 TCGA-34-5231-01 2 216289835 216289835 C T FN1 Missense_Mutation p.V340I 0.32 tolerated(0.36) benign(0.005) TCGA-34-5231-01 2 223158770 223158770 C T PAX3 Intron 0.40 TCGA-34-5231-01 2 225717649 225717649 T C DOCK10 Intron 0.31 TCGA-34-5231-01 2 227663167 227663167 C A IRS1 Silent p.A96A 0.26 TCGA-34-5231-01 2 228115904 228115904 C A COL4A3 Missense_Mutation p.P199T 0.26 probably_damaging(0.992) TCGA-34-5231-01 2 241534701 241534701 G T CAPN10 Missense_Mutation p.V420L 0.32 tolerated(0.05) benign(0.168) TCGA-34-5231-01 2 32475784 32475784 T C NLRC4 Silent p.A383A 0.27 TCGA-34-5231-01 2 33335712 33335712 C G LTBP1 Silent p.L309L 0.31 TCGA-34-5231-01 2 33749499 33749499 A T RASGRP3 Nonsense_Mutation p.K231* 0.18 TCGA-34-5231-01 2 33824364 33824364 A T FAM98A 5'UTR 0.24 TCGA-34-5231-01 2 3691114 3691114 A T COLEC11 Nonsense_Mutation p.K151* 0.19 TCGA-34-5231-01 2 40656664 40656664 C T SLC8A1 Missense_Mutation p.D253N 0.12 deleterious(0) probably_damaging(1) TCGA-34-5231-01 2 43732779 43732779 T C THADA Missense_Mutation p.I1201M 0.37 tolerated(0.09) benign(0.016) TCGA-34-5231-01 2 43968112 43968112 G C PLEKHH2 Missense_Mutation p.G1051R 0.15 deleterious(0.01) probably_damaging(0.969) TCGA-34-5231-01 2 50149181 50149181 T C NRXN1 Silent p.S1515S 0.16 TCGA-34-5231-01 2 54853176 54853176 C T SPTBN1 Silent p.A483A 0.38 TCGA-34-5231-01 2 69173521 69173521 G T GKN2 Missense_Mutation p.D129E 0.38 tolerated(0.89) benign(0.017) TCGA-34-5231-01 2 72968430 72968430 T C EXOC6B Intron 0.16 TCGA-34-5231-01 2 79254998 79254998 G A REG3G Nonsense_Mutation p.W133* 0.57 TCGA-34-5231-01 2 80529841 80529841 C G LRRTM1 Missense_Mutation p.E368D 0.46 tolerated(0.61) benign(0.001) TCGA-34-5231-01 2 80530675 80530675 C T LRRTM1 Silent p.Q90Q 0.19 TCGA-34-5231-01 2 89265884 89265884 C A IGKV1-6 Missense_Mutation p.R83M 0.58 deleterious(0.01) possibly_damaging(0.455) TCGA-34-5231-01 2 96071537 96071537 C T FAHD2A Silent p.L77L 0.40 TCGA-34-5231-01 2 99787034 99787034 G C MITD1 Missense_Mutation p.Q187E 0.25 tolerated(1) benign(0) TCGA-34-5231-01 3 100018091 100018091 C T TBC1D23 Silent p.V336V 0.45 TCGA-34-5231-01 3 105439079 105439079 C A CBLB Missense_Mutation p.G407C 0.56 deleterious(0) probably_damaging(1) TCGA-34-5231-01 3 108475364 108475364 A T RETNLB Missense_Mutation p.C67S 0.17 deleterious(0) probably_damaging(1) TCGA-34-5231-01 3 109049497 109049497 G T DPPA4 Missense_Mutation p.L185I 0.23 deleterious(0.02) probably_damaging(0.968) TCGA-34-5231-01 3 119198946 119198946 G A POGLUT1 Missense_Mutation p.G169R 0.42 deleterious(0) probably_damaging(0.999) TCGA-34-5231-01 3 120363167 120363167 T A HGD Missense_Mutation p.Q258L 0.26 tolerated(0.59) possibly_damaging(0.554) TCGA-34-5231-01 3 121341801 121341801 C A FBXO40 Missense_Mutation p.H509N 0.40 deleterious(0.01) possibly_damaging(0.572) TCGA-34-5231-01 3 124369677 124369677 G T KALRN Missense_Mutation p.R166L 0.24 tolerated(0.16) probably_damaging(0.999) TCGA-34-5231-01 3 130290070 130290070 G C COL6A6 Missense_Mutation p.R937P 0.53 deleterious(0) probably_damaging(0.951) TCGA-34-5231-01 3 132241716 132241716 T C DNAJC13 Silent p.D1906D 0.44 TCGA-34-5231-01 3 134825429 134825429 A T EPHB1 Silent p.P315P 0.48 TCGA-34-5231-01 3 147128212 147128212 C A ZIC1 Silent p.R105R 0.29 TCGA-34-5231-01 3 148597673 148597673 T C CPA3 Silent p.Y191Y 0.34 TCGA-34-5231-01 3 150128173 150128173 G A TSC22D2 Missense_Mutation p.V346M 0.20 tolerated(0.11) possibly_damaging(0.608) TCGA-34-5231-01 3 150384672 150384672 G T FAM194A Missense_Mutation p.R544S 0.37 tolerated(0.11) benign(0.242) TCGA-34-5231-01 3 151075017 151075017 G T MED12L Missense_Mutation p.S858I 0.18 tolerated(0.06) benign(0.261) TCGA-34-5231-01 3 154866431 154866431 G T MME Silent p.V530V 0.13 TCGA-34-5231-01 3 156978807 156978807 C T VEPH1 3'UTR 0.12 TCGA-34-5231-01 3 157098948 157098948 C G VEPH1 Missense_Mutation p.G375A 0.16 tolerated(1) benign(0.001) TCGA-34-5231-01 3 157839991 157839991 G T RSRC1 Missense_Mutation p.R33I 0.18 deleterious_low_confidence(0) unknown(0) TCGA-34-5231-01 3 158408930 158408930 C T GFM1 Silent p.V691V 0.11 TCGA-34-5231-01 3 164700133 164700133 G T SI Silent p.S1771S 0.28 TCGA-34-5231-01 3 164700156 164700156 T A SI Nonsense_Mutation p.K1764* 0.27 TCGA-34-5231-01 3 164792437 164792437 G A SI Missense_Mutation p.S46L 0.12 tolerated(0.76) benign(0.001) TCGA-34-5231-01 3 167031801 167031801 G T ZBBX Missense_Mutation p.L460M 0.52 deleterious(0.05) probably_damaging(0.973) TCGA-34-5231-01 3 169663945 169663945 C A RP11-379K17.4 RNA 0.26 TCGA-34-5231-01 3 169890469 169890469 C T PHC3 Missense_Mutation p.S71N 0.25 tolerated(0.13) probably_damaging(0.961) TCGA-34-5231-01 3 179096536 179096536 A G MFN1 Silent p.V532V 0.10 TCGA-34-5231-01 3 183014925 183014925 G T MCF2L2 Missense_Mutation p.L446I 0.11 deleterious(0) probably_damaging(0.976) TCGA-34-5231-01 3 183667579 183667579 G A ABCC5 Silent p.T1063T 0.38 TCGA-34-5231-01 3 183669786 183669786 G A ABCC5 Silent p.T891T 0.36 TCGA-34-5231-01 3 25792627 25792627 G A NGLY1 Missense_Mutation p.S207L 0.68 deleterious(0.02) benign(0.001) TCGA-34-5231-01 3 32483427 32483427 G C CMTM7 Missense_Mutation p.L85F 0.62 tolerated(0.13) benign(0.181) TCGA-34-5231-01 3 38601752 38601752 G T SCN5A Silent p.I1377I 0.58 TCGA-34-5231-01 3 38888607 38888607 C T SCN11A Missense_Mutation p.A1652T 0.66 tolerated(0.5) benign(0.032) TCGA-34-5231-01 3 40529090 40529090 G T ZNF619 Missense_Mutation p.Q403H 0.53 deleterious(0.01) benign(0.174) TCGA-34-5231-01 3 44894330 44894330 C A KIF15 3'UTR 0.83 TCGA-34-5231-01 3 47704056 47704056 C G SMARCC1 Missense_Mutation p.W642C 0.74 deleterious(0) probably_damaging(0.999) TCGA-34-5231-01 3 48501837 48501837 A G ATRIP Missense_Mutation p.T462A 0.64 tolerated(0.82) benign(0) TCGA-34-5231-01 3 48678785 48678785 A G CELSR3 Silent p.S2999S 0.65 TCGA-34-5231-01 3 48696418 48696418 T A CELSR3 Missense_Mutation p.Q1217L 0.73 deleterious(0.02) benign(0.179) TCGA-34-5231-01 3 53752342 53752342 A T CACNA1D Missense_Mutation p.S469C 0.65 deleterious(0) probably_damaging(0.996) TCGA-34-5231-01 3 64627625 64627625 G A ADAMTS9 Silent p.P585P 0.74 TCGA-34-5231-01 3 74344369 74344369 G T CNTN3 Missense_Mutation p.S807Y 0.57 deleterious(0.01) possibly_damaging(0.629) TCGA-34-5231-01 3 85961688 85961688 T C CADM2 Missense_Mutation p.I225T 0.59 deleterious(0) benign(0.356) TCGA-34-5231-01 3 89498461 89498461 G T EPHA3 Silent p.G811G 0.64 TCGA-34-5231-01 3 97868349 97868349 G T OR5H14 Missense_Mutation p.M40I 0.20 deleterious(0.03) benign(0.001) TCGA-34-5231-01 4 118975630 118975630 G A NDST3 Missense_Mutation p.A189T 0.19 tolerated(0.23) benign(0.378) TCGA-34-5231-01 4 120528376 120528376 C T PDE5A Missense_Mutation p.E77K 0.21 tolerated(0.44) benign(0.085) TCGA-34-5231-01 4 122774121 122774121 C A BBS7 Missense_Mutation p.R280L 0.44 tolerated(0.19) benign(0.008) TCGA-34-5231-01 4 123178522 123178522 G C KIAA1109 Missense_Mutation p.R2164T 0.43 benign(0.03) TCGA-34-5231-01 4 126389770 126389770 A G FAT4 Silent p.K4001K 0.42 TCGA-34-5231-01 4 129776951 129776951 A C JADE1 Missense_Mutation p.E288A 0.37 deleterious(0) probably_damaging(0.999) TCGA-34-5231-01 4 130032970 130032970 C A C4orf33 3'UTR 0.60 TCGA-34-5231-01 4 155506593 155506593 A G FGA Intron 0.64 TCGA-34-5231-01 4 156289766 156289766 T A MAP9 Missense_Mutation p.K227I 0.23 deleterious(0.03) benign(0.223) TCGA-34-5231-01 4 156715238 156715238 G T GUCY1B3 Missense_Mutation p.Q242H 0.53 tolerated(0.12) benign(0.087) TCGA-34-5231-01 4 164271902 164271902 G C NPY5R Silent p.L159L 0.26 TCGA-34-5231-01 4 164393427 164393427 G C TKTL2 Missense_Mutation p.P487R 0.27 deleterious(0.04) benign(0.031) TCGA-34-5231-01 4 169158919 169158919 G A DDX60 Silent p.L1398L 0.50 TCGA-34-5231-01 4 170927107 170927107 C T MFAP3L 5'UTR 0.75 TCGA-34-5231-01 4 177100702 177100702 G T WDR17 Missense_Mutation p.G1314V 0.38 deleterious(0.01) probably_damaging(1) TCGA-34-5231-01 4 186423409 186423409 G T PDLIM3 3'UTR 0.20 TCGA-34-5231-01 4 189020207 189020207 G A TRIML2 Silent p.G151G 0.23 TCGA-34-5231-01 4 22749310 22749310 G T GBA3 Silent p.A226A 0.72 TCGA-34-5231-01 4 46307694 46307694 C A GABRA2 Missense_Mutation p.W198C 0.45 deleterious(0) probably_damaging(0.999) TCGA-34-5231-01 4 46307695 46307695 C A GABRA2 Missense_Mutation p.W198L 0.45 deleterious(0.01) probably_damaging(0.99) TCGA-34-5231-01 4 52864046 52864046 G A LRRC66 Silent p.L242L 0.54 TCGA-34-5231-01 4 57181005 57181005 A G KIAA1211 Missense_Mutation p.E446G 0.16 deleterious(0.01) unknown(0) TCGA-34-5231-01 4 66280001 66280001 C G EPHA5 Splice_Site p.X563_splice 0.47 TCGA-34-5231-01 4 70355265 70355265 G T UGT2B4 Missense_Mutation p.S298R 0.47 deleterious(0) probably_damaging(0.998) TCGA-34-5231-01 4 70361031 70361031 A G UGT2B4 Silent p.H183H 0.22 TCGA-34-5231-01 4 73156630 73156630 C G ADAMTS3 Missense_Mutation p.R958P 0.33 deleterious(0.01) probably_damaging(0.918) TCGA-34-5231-01 4 73987360 73987360 T G ANKRD17 Silent p.L1203L 0.48 TCGA-34-5231-01 4 77290576 77290576 G A CCDC158 Intron 0.54 TCGA-34-5231-01 4 82377762 82377762 T A RASGEF1B Intron 0.44 TCGA-34-5231-01 4 83839358 83839358 C T THAP9 Nonsense_Mutation p.R665* 0.19 TCGA-34-5231-01 4 84376793 84376793 G A HELQ Silent p.N18N 0.22 TCGA-34-5231-01 4 85598396 85598396 T G WDFY3 Missense_Mutation p.E3471D 0.15 tolerated(0.06) probably_damaging(0.995) TCGA-34-5231-01 4 88235003 88235003 T A HSD17B13 Missense_Mutation p.T223S 0.34 deleterious(0.03) possibly_damaging(0.484) TCGA-34-5231-01 4 88989126 88989126 C T PKD2 Missense_Mutation p.S812F 0.17 deleterious(0) probably_damaging(0.979) TCGA-34-5231-01 4 90874208 90874208 A G MMRN1 Missense_Mutation p.Y1109C 0.25 deleterious(0) probably_damaging(0.989) TCGA-34-5231-01 5 101582983 101582983 C G SLCO4C1 Missense_Mutation p.G595A 0.23 tolerated(0.3) benign(0.005) TCGA-34-5231-01 5 101627153 101627153 C T SLCO4C1 Silent p.K171K 0.23 TCGA-34-5231-01 5 106716890 106716890 T A EFNA5 3'UTR 0.47 TCGA-34-5231-01 5 11364830 11364832 GGT A CTNND2 Frame_Shift_Del p.T450Wfs*63 0.38 TCGA-34-5231-01 5 113740526 113740526 C G KCNN2 Missense_Mutation p.A325G 0.35 deleterious(0.03) possibly_damaging(0.891) TCGA-34-5231-01 5 114462205 114462205 T C TRIM36 Missense_Mutation p.M728V 0.42 tolerated_low_confidence(0.6) benign(0) TCGA-34-5231-01 5 118479539 118479539 T A DMXL1 Missense_Mutation p.Y794N 0.37 tolerated(0.14) benign(0.049) TCGA-34-5231-01 5 120021726 120021726 G T PRR16 Silent p.T56T 0.27 TCGA-34-5231-01 5 127863628 127863628 C A FBN2 Missense_Mutation p.G157W 0.34 deleterious(0) probably_damaging(0.965) TCGA-34-5231-01 5 13770908 13770908 A T DNAH5 Nonsense_Mutation p.Y3185* 0.29 TCGA-34-5231-01 5 138994297 138994297 C G UBE2D2 Missense_Mutation p.Q46E 0.32 tolerated_low_confidence(0.27) benign(0.003) TCGA-34-5231-01 5 140215250 140215250 C T PCDHA7 Missense_Mutation p.R428W 0.34 deleterious_low_confidence(0.04) benign(0.06) TCGA-34-5231-01 5 140216091 140216091 C G PCDHA7 Missense_Mutation p.S708C 0.24 deleterious_low_confidence(0) possibly_damaging(0.898) TCGA-34-5231-01 5 140230636 140230636 T G PCDHA9 Intron 0.38 TCGA-34-5231-01 5 140242941 140242941 C A AC005609.1 Missense_Mutation p.R12L 0.23 deleterious_low_confidence(0) benign(0.433) TCGA-34-5231-01 5 140250292 140250293 GC - PCDHA11 Frame_Shift_Del p.D538Cfs*39 0.22 TCGA-34-5231-01 5 140250819 140250819 G C PCDHA11 Missense_Mutation p.V711L 0.35 tolerated_low_confidence(0.12) benign(0.05) TCGA-34-5231-01 5 140346559 140346559 C A PCDHAC2 Silent p.R70R 0.28 TCGA-34-5231-01 5 140530565 140530565 C G PCDHB6 Missense_Mutation p.Q243E 0.24 deleterious_low_confidence(0.02) benign(0.009) TCGA-34-5231-01 5 140537765 140537765 C T PCDHB17 3'UTR 0.27 TCGA-34-5231-01 5 140559017 140559017 G A PCDHB8 Missense_Mutation p.A468T 0.11 deleterious_low_confidence(0) benign(0.36) TCGA-34-5231-01 5 140581299 140581299 C T PCDHB11 Missense_Mutation p.P651L 0.13 deleterious_low_confidence(0.01) probably_damaging(0.943) TCGA-34-5231-01 5 140590434 140590434 G C PCDHB12 Missense_Mutation p.R652P 0.18 deleterious_low_confidence(0.04) possibly_damaging(0.793) TCGA-34-5231-01 5 140736526 140736526 C T PCDHGA4 Silent p.L587L 0.32 TCGA-34-5231-01 5 140745690 140745690 C T PCDHGA5 Missense_Mutation p.S598L 0.37 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-34-5231-01 5 140772974 140772974 C T PCDHGA8 Silent p.R198R 0.27 TCGA-34-5231-01 5 140774332 140774332 A T PCDHGA8 Missense_Mutation p.Q651L 0.15 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-34-5231-01 5 14399202 14399202 G A TRIO Intron 0.29 TCGA-34-5231-01 5 146795384 146795384 T G DPYSL3 Missense_Mutation p.K236N 0.27 tolerated(0.05) benign(0.309) TCGA-34-5231-01 5 146971093 146971093 A G JAKMIP2 3'UTR 0.27 TCGA-34-5231-01 5 150275503 150275503 C A ZNF300 Missense_Mutation p.G449V 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-34-5231-01 5 150911198 150911198 C A FAT2 Missense_Mutation p.R3254L 0.31 possibly_damaging(0.719) TCGA-34-5231-01 5 155935659 155935659 G A SGCD Missense_Mutation p.G81R 0.40 deleterious(0) probably_damaging(1) TCGA-34-5231-01 5 156456809 156456809 C A HAVCR1 Missense_Mutation p.V344F 0.29 deleterious(0) benign(0.354) TCGA-34-5231-01 5 161576271 161576271 C T GABRG2 Silent p.V400V 0.32 TCGA-34-5231-01 5 169127139 169127139 G T DOCK2 Missense_Mutation p.M418I 0.30 deleterious(0.01) possibly_damaging(0.472) TCGA-34-5231-01 5 176638020 176638020 G T NSD1 Nonsense_Mutation p.E874* 0.73 TCGA-34-5231-01 5 179227526 179227526 G C MGAT4B Missense_Mutation p.S241C 0.17 deleterious(0) possibly_damaging(0.84) TCGA-34-5231-01 5 180219177 180219177 A T MGAT1 Silent p.P265P 0.25 TCGA-34-5231-01 5 22078833 22078833 C G CDH12 5'UTR 0.32 TCGA-34-5231-01 5 23509588 23509588 G T PRDM9 Missense_Mutation p.A27S 0.17 deleterious_low_confidence(0.03) benign(0.073) TCGA-34-5231-01 5 33937291 33937291 C A RXFP3 Missense_Mutation p.P149H 0.28 deleterious(0) probably_damaging(0.987) TCGA-34-5231-01 5 38881806 38881806 G A OSMR Missense_Mutation p.D120N 0.37 tolerated(0.1) benign(0.275) TCGA-34-5231-01 5 43659318 43659318 G T NNT Missense_Mutation p.V834F 0.37 deleterious(0) probably_damaging(1) TCGA-34-5231-01 5 45262680 45262680 G T HCN1 Missense_Mutation p.S672R 0.31 tolerated_low_confidence(0.07) benign(0.1) TCGA-34-5231-01 5 482234 482234 C A SLC9A3 Silent p.V465V 0.26 TCGA-34-5231-01 5 61648442 61648442 G T KIF2A Missense_Mutation p.S121I 0.38 deleterious(0.05) benign(0.005) TCGA-34-5231-01 5 63256827 63256827 G A HTR1A Silent p.T240T 0.33 TCGA-34-5231-01 5 66460076 66460076 G T MAST4 Missense_Mutation p.R1690L 0.43 probably_damaging(0.942) TCGA-34-5231-01 5 68661401 68661401 T G TAF9 Missense_Mutation p.K55T 0.31 deleterious(0) benign(0.411) TCGA-34-5231-01 5 68666993 68666993 C G RAD17 5'UTR 0.14 TCGA-34-5231-01 5 70338049 70338049 C A GTF2H2 Missense_Mutation p.R295L 0.64 tolerated(0.66) benign(0.003) TCGA-34-5231-01 5 7520856 7520856 G T ADCY2 Silent p.S138S 0.16 TCGA-34-5231-01 5 7743796 7743796 C A ADCY2 Silent p.G629G 0.35 TCGA-34-5231-01 5 78076199 78076199 T A ARSB 3'UTR 0.17 TCGA-34-5231-01 5 79743890 79743890 C T ZFYVE16 Missense_Mutation p.P924S 0.23 tolerated(0.23) benign(0.007) TCGA-34-5231-01 5 82833026 82833026 G A VCAN Missense_Mutation p.V1402M 0.34 deleterious(0) possibly_damaging(0.885) TCGA-34-5231-01 5 82836960 82836960 C T VCAN Missense_Mutation p.A2713V 0.45 tolerated(0.11) benign(0.103) TCGA-34-5231-01 5 82841364 82841364 C A VCAN Missense_Mutation p.R3092S 0.23 tolerated(0.09) benign(0.07) TCGA-34-5231-01 5 85578583 85578583 C A NBPF22P RNA 0.27 TCGA-34-5231-01 5 88047822 88047822 G A MEF2C Silent p.I165I 0.25 TCGA-34-5231-01 6 10529618 10529618 G T GCNT2 Silent p.S158S 0.15 TCGA-34-5231-01 6 109854575 109854575 T A AK9 Missense_Mutation p.Q1150L 0.67 deleterious(0.01) probably_damaging(0.962) TCGA-34-5231-01 6 111583574 111583574 G T KIAA1919 Missense_Mutation p.G48C 0.70 deleterious(0) probably_damaging(1) TCGA-34-5231-01 6 132031195 132031195 A T CTAGE9 Silent p.A321A 0.57 TCGA-34-5231-01 6 151859392 151859392 C A CCDC170 Missense_Mutation p.N133K 0.76 deleterious(0.03) benign(0.238) TCGA-34-5231-01 6 152706908 152706908 C G SYNE1 Missense_Mutation p.E2851D 0.56 probably_damaging(0.992) TCGA-34-5231-01 6 15507459 15507459 A C JARID2 Silent p.P878P 0.22 TCGA-34-5231-01 6 15517446 15517446 G C JARID2 Missense_Mutation p.V1169L 0.48 tolerated(0.41) possibly_damaging(0.615) TCGA-34-5231-01 6 160551239 160551239 G T SLC22A1 Missense_Mutation p.R172M 0.71 deleterious(0.02) probably_damaging(0.938) TCGA-34-5231-01 6 26091106 26091106 A G HFE Silent p.S38S 0.56 TCGA-34-5231-01 6 26217562 26217562 G C HIST1H2AE Missense_Mutation p.K120N 0.20 deleterious_low_confidence(0) benign(0.323) TCGA-34-5231-01 6 27368147 27368147 G T ZNF391 5'UTR 0.38 TCGA-34-5231-01 6 27839675 27839675 A G HIST1H3I 3'UTR 0.18 TCGA-34-5231-01 6 27879955 27879955 A T OR2B2 Missense_Mutation p.V48E 0.21 deleterious(0) possibly_damaging(0.905) TCGA-34-5231-01 6 27925692 27925692 T C OR2B6 Missense_Mutation p.V225A 0.21 deleterious(0.01) possibly_damaging(0.787) TCGA-34-5231-01 6 28294095 28294095 C A ZSCAN31 Missense_Mutation p.G357C 0.22 deleterious(0) probably_damaging(1) TCGA-34-5231-01 6 31598561 31598561 G A PRRC2A Silent p.E816E 0.56 TCGA-34-5231-01 6 31692838 31692838 C T C6orf25 Missense_Mutation p.A238V 0.42 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-34-5231-01 6 31827424 31827424 A G NEU1 3'UTR 0.26 TCGA-34-5231-01 6 33131440 33131440 C G COL11A2 3'UTR 0.20 TCGA-34-5231-01 6 33288803 33288803 C T DAXX Missense_Mutation p.G250D 0.48 deleterious(0) probably_damaging(0.999) TCGA-34-5231-01 6 34008008 34008008 C T GRM4 Missense_Mutation p.D485N 0.23 tolerated(0.55) benign(0) TCGA-34-5231-01 6 51611545 51611545 C A PKHD1 Missense_Mutation p.K3324N 0.11 deleterious(0) probably_damaging(0.939) TCGA-34-5231-01 6 52103568 52103568 G A IL17F Missense_Mutation p.R72C 0.40 tolerated(0.16) possibly_damaging(0.47) TCGA-34-5231-01 6 53778682 53778682 T C LRRC1 Missense_Mutation p.C341R 0.30 deleterious(0) benign(0.136) TCGA-34-5231-01 6 55128572 55128572 C G HCRTR2 Silent p.L238L 0.16 TCGA-34-5231-01 6 55196607 55196607 A T GFRAL Missense_Mutation p.K39N 0.38 tolerated(0.1) benign(0.28) TCGA-34-5231-01 6 69703760 69703760 A C BAI3 Missense_Mutation p.Y612S 0.68 deleterious(0) possibly_damaging(0.572) TCGA-34-5231-01 6 70610162 70610162 A G COL19A1 Silent p.R66R 0.17 TCGA-34-5231-01 6 70778330 70778330 C T COL19A1 Nonsense_Mutation p.Q396* 0.23 TCGA-34-5231-01 6 70978539 70978539 G C COL9A1 Missense_Mutation p.R419G 0.12 probably_damaging(0.912) TCGA-34-5231-01 7 100389666 100389666 G A ZAN Silent p.P2535P 0.45 TCGA-34-5231-01 7 100679504 100679504 C G MUC17 Missense_Mutation p.Q1603E 0.38 unknown(0) TCGA-34-5231-01 7 100732899 100732899 G C TRIM56 3'UTR 0.40 TCGA-34-5231-01 7 100800704 100800704 G C AP1S1 Missense_Mutation p.E77Q 0.33 deleterious(0) probably_damaging(0.993) TCGA-34-5231-01 7 106508547 106508547 G T PIK3CG Missense_Mutation p.V181L 0.39 tolerated(0.43) benign(0.012) TCGA-34-5231-01 7 107399652 107399652 G T CBLL1 3'UTR 0.42 TCGA-34-5231-01 7 124386619 124386619 C G GPR37 Missense_Mutation p.R601P 0.43 deleterious(0) probably_damaging(0.985) TCGA-34-5231-01 7 12684270 12684270 C G SCIN Silent p.T607T 0.86 TCGA-34-5231-01 7 127240279 127240279 C T FSCN3 Silent p.S441S 0.37 TCGA-34-5231-01 7 128496854 128496854 C A FLNC Silent p.V2480V 0.35 TCGA-34-5231-01 7 131895861 131895861 G C PLXNA4 Silent p.P713P 0.38 TCGA-34-5231-01 7 137076045 137076045 T G DGKI Missense_Mutation p.D1040A 0.16 deleterious(0.05) possibly_damaging(0.723) TCGA-34-5231-01 7 138601769 138601769 G A KIAA1549 Missense_Mutation p.P868L 0.21 deleterious(0.03) benign(0.022) TCGA-34-5231-01 7 138964076 138964076 G T UBN2 Missense_Mutation p.K679N 0.31 deleterious(0) probably_damaging(0.994) TCGA-34-5231-01 7 140449220 140449220 T C BRAF Splice_Site p.X621_splice 0.27 TCGA-34-5231-01 7 142448151 142448151 T C TRBV29-1 Missense_Mutation p.L11P 0.45 tolerated(0.36) unknown(0) TCGA-34-5231-01 7 142574226 142574226 C A TRPV6 Missense_Mutation p.D233Y 0.43 deleterious(0) possibly_damaging(0.595) TCGA-34-5231-01 7 142574227 142574227 C G TRPV6 Silent p.L232L 0.42 TCGA-34-5231-01 7 142759760 142759760 A T OR6W1P RNA 0.92 TCGA-34-5231-01 7 143826539 143826539 C T OR2A14 Silent p.L112L 0.42 TCGA-34-5231-01 7 146805352 146805352 G C CNTNAP2 Missense_Mutation p.E222Q 0.37 deleterious(0.01) possibly_damaging(0.817) TCGA-34-5231-01 7 147259265 147259265 C A CNTNAP2 Missense_Mutation p.L605I 0.38 tolerated(0.09) benign(0.042) TCGA-34-5231-01 7 147600754 147600754 C A CNTNAP2 Silent p.I732I 0.43 TCGA-34-5231-01 7 150174193 150174193 T A GIMAP8 Silent p.I441I 0.36 TCGA-34-5231-01 7 151874731 151874731 T A KMT2C Nonsense_Mutation p.R2603* 0.40 TCGA-34-5231-01 7 151878026 151878026 T A KMT2C Nonsense_Mutation p.R2307* 0.36 TCGA-34-5231-01 7 154379572 154379572 T C DPP6 Intron 0.43 TCGA-34-5231-01 7 154684082 154684082 C A DPP6 Missense_Mutation p.S830R 0.44 tolerated(0.66) benign(0.013) TCGA-34-5231-01 7 156742848 156742848 G T NOM1 Silent p.S139S 0.50 TCGA-34-5231-01 7 156976589 156976589 G C UBE3C Missense_Mutation p.G337R 0.41 tolerated(0.22) possibly_damaging(0.776) TCGA-34-5231-01 7 18067020 18067020 A G PRPS1L1 Missense_Mutation p.L129P 0.44 deleterious(0) probably_damaging(0.989) TCGA-34-5231-01 7 19184887 19184887 G A FERD3L Silent p.F33F 0.87 TCGA-34-5231-01 7 21784505 21784505 G A DNAH11 Missense_Mutation p.M2785I 0.79 benign(0.001) TCGA-34-5231-01 7 30492415 30492415 C T NOD1 Silent p.V206V 0.32 TCGA-34-5231-01 7 35051053 35051053 C A DPY19L1 Missense_Mutation p.A114S 0.44 tolerated(0.08) benign(0.126) TCGA-34-5231-01 7 38299571 38299572 AC - TRGC1 3'UTR 0.50 TCGA-34-5231-01 7 53103652 53103653 - T POM121L12 Frame_Shift_Ins p.W97Lfs*49 0.79 TCGA-34-5231-01 7 63726888 63726888 G A ZNF679 Missense_Mutation p.E293K 0.39 tolerated(0.07) possibly_damaging(0.617) TCGA-34-5231-01 7 66420634 66420634 A T TMEM248 3'UTR 0.49 TCGA-34-5231-01 7 73105283 73105283 A T WBSCR22 Nonsense_Mutation p.K134* 0.33 TCGA-34-5231-01 7 73790773 73790773 A G CLIP2 Missense_Mutation p.E681G 0.50 deleterious(0) probably_damaging(0.999) TCGA-34-5231-01 7 79846737 79846737 T A GNAI1 Missense_Mutation p.N331K 0.44 deleterious(0) probably_damaging(0.985) TCGA-34-5231-01 7 83029392 83029392 G T SEMA3E Silent p.R440R 0.28 TCGA-34-5231-01 7 87537254 87537254 G C DBF4 Missense_Mutation p.E601Q 0.34 tolerated(0.05) probably_damaging(0.998) TCGA-34-5231-01 7 89791272 89791272 G A STEAP1 Nonsense_Mutation p.W214* 0.33 TCGA-34-5231-01 7 92763529 92763529 T C SAMD9L Missense_Mutation p.I586V 0.41 tolerated(0.22) benign(0.317) TCGA-34-5231-01 7 93073056 93073056 A G CALCR Missense_Mutation p.I255T 0.39 deleterious(0) possibly_damaging(0.53) TCGA-34-5231-01 7 93106913 93106913 G T CALCR Silent p.S109S 0.31 TCGA-34-5231-01 7 943784 943784 G A ADAP1 Silent p.F209F 0.85 TCGA-34-5231-01 7 95750514 95750514 C A SLC25A13 Nonsense_Mutation p.G674* 0.37 TCGA-34-5231-01 7 97860328 97860328 T C TECPR1 Missense_Mutation p.S743G 0.33 tolerated(0.39) probably_damaging(0.953) TCGA-34-5231-01 7 99489826 99489826 A T TRIM4 Nonsense_Mutation p.L488* 0.40 TCGA-34-5231-01 8 106456566 106456566 A C ZFPM2 Missense_Mutation p.K86N 0.72 tolerated(0.07) benign(0.021) TCGA-34-5231-01 8 110498988 110498988 A G PKHD1L1 Missense_Mutation p.E3273G 0.24 deleterious(0.05) benign(0.002) TCGA-34-5231-01 8 11189423 11189423 G T SLC35G5 Missense_Mutation p.V270L 0.54 deleterious(0.03) benign(0.315) TCGA-34-5231-01 8 113353710 113353710 G C CSMD3 Nonsense_Mutation p.Y2216* 0.69 TCGA-34-5231-01 8 113562923 113562923 G T CSMD3 Missense_Mutation p.S1514Y 0.78 deleterious(0) probably_damaging(0.995) TCGA-34-5231-01 8 121293237 121293237 A T COL14A1 Missense_Mutation p.T1255S 0.23 tolerated(1) probably_damaging(0.963) TCGA-34-5231-01 8 144406793 144406793 C T TOP1MT Silent p.S226S 0.15 TCGA-34-5231-01 8 144994835 144994835 C A PLEC Missense_Mutation p.D3189Y 0.14 probably_damaging(0.974) TCGA-34-5231-01 8 144996841 144996841 C A PLEC Missense_Mutation p.R2556L 0.19 benign(0.075) TCGA-34-5231-01 8 145584561 145584561 C T SLC52A2 Silent p.A408A 0.20 TCGA-34-5231-01 8 19700402 19700402 G A INTS10 Missense_Mutation p.M561I 0.60 deleterious(0.01) benign(0.027) TCGA-34-5231-01 8 20008219 20008219 A G SLC18A1 Missense_Mutation p.I351T 0.60 deleterious(0.01) probably_damaging(0.955) TCGA-34-5231-01 8 25766020 25766020 T A EBF2 Silent p.A201A 0.69 TCGA-34-5231-01 8 2855586 2855586 C A CSMD1 Missense_Mutation p.R2775L 0.60 possibly_damaging(0.613) TCGA-34-5231-01 8 39495194 39495194 C A ADAM18 Silent p.R267R 0.10 TCGA-34-5231-01 8 39495196 39495196 G A ADAM18 Silent p.R267R 0.10 TCGA-34-5231-01 8 42587211 42587211 T A CHRNB3 Missense_Mutation p.V254E 0.14 deleterious(0) probably_damaging(1) TCGA-34-5231-01 8 55534029 55534029 G A RP1 Missense_Mutation p.R168H 0.56 tolerated(0.13) benign(0.014) TCGA-34-5231-01 8 55540535 55540535 G T RP1 Missense_Mutation p.G1365C 0.60 tolerated(0.31) possibly_damaging(0.525) TCGA-34-5231-01 8 57025720 57025720 G A MOS Silent p.T274T 0.18 TCGA-34-5231-01 8 57025733 57025733 C G MOS Missense_Mutation p.W270S 0.20 deleterious(0) probably_damaging(1) TCGA-34-5231-01 8 57026206 57026206 C A MOS Silent p.L112L 0.21 TCGA-34-5231-01 8 59410832 59410832 T A CYP7A1 Nonsense_Mutation p.K93* 0.63 TCGA-34-5231-01 8 59514042 59514042 G C NSMAF Missense_Mutation p.S424C 0.18 deleterious(0) probably_damaging(1) TCGA-34-5231-01 8 61757513 61757513 G C CHD7 Silent p.L1647L 0.22 TCGA-34-5231-01 8 63978502 63978502 G C TTPA Missense_Mutation p.I171M 0.22 deleterious(0.03) benign(0.205) TCGA-34-5231-01 8 66539640 66539640 T C ARMC1 5'UTR 0.63 TCGA-34-5231-01 8 67476904 67476904 T A MYBL1 3'UTR 0.15 TCGA-34-5231-01 8 69358584 69358584 G T C8orf34 Missense_Mutation p.D166Y 0.21 deleterious(0) probably_damaging(0.986) TCGA-34-5231-01 8 70515555 70515555 G T SULF1 Missense_Mutation p.R397M 0.13 deleterious(0) benign(0.439) TCGA-34-5231-01 8 7717926 7717926 T C SPAG11A Intron 0.79 TCGA-34-5231-01 8 77617659 77617663 GAAAG TAAATT ZFHX4 Nonsense_Mutation p.E446* 0.14 TCGA-34-5231-01 8 77767035 77767035 G A ZFHX4 Silent p.L2626L 0.57 TCGA-34-5231-01 8 77767965 77767965 G A ZFHX4 Missense_Mutation p.M2936I 0.13 possibly_damaging(0.758) TCGA-34-5231-01 8 87081736 87081736 G C PSKH2 Missense_Mutation p.A39G 0.26 tolerated(0.21) benign(0.306) TCGA-34-5231-01 8 87226736 87226736 A G SLC7A13 Missense_Mutation p.I440T 0.22 tolerated(0.15) benign(0.013) TCGA-34-5231-01 8 87591433 87591433 G A CNGB3 Missense_Mutation p.A610V 0.32 deleterious(0) possibly_damaging(0.893) TCGA-34-5231-01 8 93017356 93017356 C A RUNX1T1 Missense_Mutation p.R254L 0.24 deleterious(0.01) possibly_damaging(0.82) TCGA-34-5231-01 8 95501056 95501056 T G KIAA1429 Silent p.R1773R 0.31 TCGA-34-5231-01 9 101056152 101056152 C T GABBR2 Missense_Mutation p.D859N 0.56 tolerated_low_confidence(0.16) benign(0.039) TCGA-34-5231-01 9 117853048 117853048 T A TNC Missense_Mutation p.S84C 0.61 deleterious(0.02) benign(0.353) TCGA-34-5231-01 9 124922218 124922218 G T MORN5 5'UTR 0.61 TCGA-34-5231-01 9 131479170 131479170 C A PKN3 Silent p.I651I 0.62 TCGA-34-5231-01 9 136523570 136523570 G T DBH 3'UTR 0.67 TCGA-34-5231-01 9 138830184 138830184 C T UBAC1 Missense_Mutation p.R329Q 0.73 deleterious(0.01) probably_damaging(0.992) TCGA-34-5231-01 9 139311657 139311657 G A PMPCA Silent p.G296G 0.71 TCGA-34-5231-01 9 14851542 14851542 C T FREM1 Missense_Mutation p.A298T 0.61 tolerated(0.07) benign(0.103) TCGA-34-5231-01 9 21971006 21971006 C G CDKN2A Missense_Mutation p.A118P 0.69 deleterious(0) probably_damaging(1) TCGA-34-5231-01 9 5920586 5920586 T C KIAA2026 Missense_Mutation p.N1804D 0.65 deleterious(0.01) benign(0.201) TCGA-34-5231-01 9 72659032 72659032 C A MAMDC2 5'UTR 0.60 TCGA-34-5231-01 9 79952371 79952371 G T VPS13A Missense_Mutation p.W2099L 0.70 tolerated(0.06) benign(0.013) TCGA-34-5231-01 X 100497460 100497460 G A DRP2 Silent p.Q325Q 0.73 TCGA-34-5231-01 X 100911581 100911581 G T ARMCX2 Missense_Mutation p.L332M 0.81 tolerated_low_confidence(0.05) possibly_damaging(0.721) TCGA-34-5231-01 X 106031167 106031167 A G RNF128 Missense_Mutation p.D275G 0.77 deleterious(0.03) benign(0.143) TCGA-34-5231-01 X 111078268 111078268 T A TRPC5 Nonsense_Mutation p.R593* 0.82 TCGA-34-5231-01 X 111078269 111078269 G A TRPC5 Silent p.A592A 0.82 TCGA-34-5231-01 X 111697946 111697946 C A ZCCHC16 5'UTR 0.75 TCGA-34-5231-01 X 123205135 123205135 A G STAG2 Missense_Mutation p.H832R 0.77 tolerated(0.07) benign(0.012) TCGA-34-5231-01 X 12738727 12738727 A T FRMPD4 3'UTR 0.68 TCGA-34-5231-01 X 128879190 128879190 C A XPNPEP2 Silent p.I82I 0.76 TCGA-34-5231-01 X 131218580 131218580 T C FRMD7 Missense_Mutation p.K227E 0.77 deleterious(0) probably_damaging(0.998) TCGA-34-5231-01 X 146271220 146271220 C T MIR513C 3'Flank 0.79 TCGA-34-5231-01 X 147063148 147063148 A G FMR1NB Missense_Mutation p.I76V 0.81 tolerated(0.7) benign(0.068) TCGA-34-5231-01 X 19983480 19983480 T C CXorf23 Missense_Mutation p.N319S 0.87 deleterious(0.01) possibly_damaging(0.69) TCGA-34-5231-01 X 2184966 2184966 C A DHRSX Missense_Mutation p.Q137H 0.59 tolerated(0.52) benign(0.063) TCGA-34-5231-01 X 24859851 24859851 C T POLA1 Silent p.L1267L 0.71 TCGA-34-5231-01 X 2828760 2828760 C T ARSD Missense_Mutation p.G359R 0.74 deleterious(0) possibly_damaging(0.867) TCGA-34-5231-01 X 30849553 30849553 C T TAB3 Silent p.R710R 0.82 TCGA-34-5231-01 X 32509416 32509416 T C DMD Missense_Mutation p.K867R 0.83 possibly_damaging(0.542) TCGA-34-5231-01 X 3261854 3261854 C A MXRA5 Missense_Mutation p.W7C 0.79 tolerated(0.1) benign(0.011) TCGA-34-5231-01 X 35820581 35820581 C A MAGEB16 Missense_Mutation p.Q90K 0.85 tolerated(0.14) benign(0.07) TCGA-34-5231-01 X 50165518 50165518 G T DGKK RNA 0.68 TCGA-34-5231-01 X 54012307 54012307 T C PHF8 Missense_Mutation p.I727V 0.71 tolerated(0.14) benign(0.366) TCGA-34-5231-01 X 54986326 54986326 C T PFKFB1 Silent p.K106K 0.84 TCGA-34-5231-01 X 65393453 65393453 C T HEPH Silent p.S199S 0.83 TCGA-34-5231-01 X 65409665 65409665 T A HEPH Silent p.R370R 0.79 TCGA-34-5231-01 X 65476032 65476032 G A HEPH Missense_Mutation p.R973Q 0.79 tolerated(0.1) benign(0.048) TCGA-34-5231-01 X 70330030 70330030 C A IL2RG Silent p.R190R 0.80 TCGA-34-5231-01 X 7268228 7268228 C T STS Nonsense_Mutation p.Q560* 0.86 TCGA-34-5231-01 X 85769298 85769298 C - DACH2 Frame_Shift_Del p.P183Lfs*15 0.68 TCGA-34-5231-01 X 89177433 89177433 A T TGIF2LX Nonsense_Mutation p.R117* 0.77 TCGA-34-5231-01 X 91133246 91133246 C T PCDH11X Silent p.N669N 0.77 TCGA-34-5231-01 Y 2709655 2709655 A T RPS4Y1 5'UTR 0.69 TCGA-34-5231-01 Y 9195450 9195450 G T TSPY8 5'Flank 0.28 TCGA-34-5232-01 10 134896348 134896348 C T GPR123-AS1 3'Flank 0.20 TCGA-34-5232-01 10 135097483 135097483 C A TUBGCP2 Missense_Mutation p.R711L 0.16 tolerated(0.06) possibly_damaging(0.869) TCGA-34-5232-01 10 33165338 33165338 G A C10ORF68 3'UTR 0.15 TCGA-34-5232-01 10 37520473 37520473 G A ANKRD30A 3'UTR 0.16 TCGA-34-5232-01 10 50724810 50724810 G A ERCC6-PGBD3 Silent p.A585A 0.15 TCGA-34-5232-01 10 68687171 68687171 C A LRRTM3 Missense_Mutation p.S166Y 0.13 tolerated(0.08) probably_damaging(1) TCGA-34-5232-01 10 69959266 69959266 A G MYPN Missense_Mutation p.T1143A 0.16 tolerated(0.09) possibly_damaging(0.686) TCGA-34-5232-01 11 122929458 122929458 G A HSPA8 Silent p.P468P 0.15 TCGA-34-5232-01 11 134037997 134037997 A T NCAPD3 Missense_Mutation p.L1156H 0.21 deleterious(0) probably_damaging(0.957) TCGA-34-5232-01 11 22363155 22363155 G A SLC17A6 Silent p.K56K 0.11 TCGA-34-5232-01 11 32450095 32450095 G A WT1 Silent p.F239F 0.16 TCGA-34-5232-01 11 55032408 55032408 A T TRIM48 Missense_Mutation p.Q26L 0.26 deleterious(0) possibly_damaging(0.708) TCGA-34-5232-01 11 56058365 56058365 G T OR8H1 Silent p.P58P 0.14 TCGA-34-5232-01 11 62297253 62297253 C T AHNAK Missense_Mutation p.V1546M 0.17 benign(0.129) TCGA-34-5232-01 11 64402790 64402790 G T NRXN2 Silent p.R1180R 0.14 TCGA-34-5232-01 11 67079325 67079325 C T SSH3 Silent p.S649S 0.07 TCGA-34-5232-01 11 77412282 77412282 T C RSF1 Silent p.V664V 0.16 TCGA-34-5232-01 12 101576588 101576588 T C SLC5A8 Silent p.Q386Q 0.15 TCGA-34-5232-01 12 102036228 102036228 G T MYBPC1 Missense_Mutation p.V208L 0.10 tolerated(0.18) benign(0.008) TCGA-34-5232-01 12 102057289 102057289 T A MYBPC1 Silent p.I744I 0.26 TCGA-34-5232-01 12 122613736 122613736 G A MLXIP Missense_Mutation p.R220Q 0.17 deleterious(0) probably_damaging(0.998) TCGA-34-5232-01 12 132404121 132404121 C T ULK1 Missense_Mutation p.S930F 0.09 deleterious(0) probably_damaging(0.991) TCGA-34-5232-01 12 132404132 132404132 C T ULK1 Nonsense_Mutation p.Q934* 0.09 TCGA-34-5232-01 12 49361766 49361766 G A WNT10B Missense_Mutation p.A225V 0.14 deleterious(0) probably_damaging(0.998) TCGA-34-5232-01 12 52774341 52774341 G A KRT84 Silent p.A410A 0.12 TCGA-34-5232-01 12 52979817 52979817 G A KRT72 Silent p.P495P 0.18 TCGA-34-5232-01 13 109614794 109614794 A - MYO16 Frame_Shift_Del p.T705Qfs*8 0.15 TCGA-34-5232-01 13 114523984 114523984 C A GAS6 Silent p.P630P 0.17 TCGA-34-5232-01 13 39435583 39435583 G T FREM2 Missense_Mutation p.R2512L 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-34-5232-01 13 67800644 67800644 A G PCDH9 Silent p.F643F 0.16 TCGA-34-5232-01 13 70681632 70681632 G A KLHL1 Missense_Mutation p.T67I 0.18 tolerated_low_confidence(0.19) benign(0.021) TCGA-34-5232-01 14 102792497 102792497 C T ZNF839 Missense_Mutation p.P155L 0.10 deleterious(0) probably_damaging(0.978) TCGA-34-5232-01 14 21052206 21052206 G T RNASE11 Missense_Mutation p.P143H 0.15 tolerated(0.55) possibly_damaging(0.749) TCGA-34-5232-01 14 39651127 39651127 G C PNN 3'UTR 0.16 TCGA-34-5232-01 14 51467493 51467493 C A TRIM9 Missense_Mutation p.A458S 0.15 deleterious(0) possibly_damaging(0.772) TCGA-34-5232-01 14 74764641 74764641 G A ABCD4 Silent p.I139I 0.19 TCGA-34-5232-01 15 101169983 101169983 C T ASB7 Nonsense_Mutation p.R185* 0.11 TCGA-34-5232-01 15 29997906 29997906 C G TJP1 Missense_Mutation p.V1632L 0.11 deleterious_low_confidence(0) benign(0.434) TCGA-34-5232-01 15 34634212 34634212 C G NOP10 Missense_Mutation p.R51P 0.12 deleterious(0.02) possibly_damaging(0.784) TCGA-34-5232-01 15 62201244 62201244 T G VPS13C Silent p.A2975A 0.11 TCGA-34-5232-01 15 75941618 75941618 G A SNX33 Missense_Mutation p.V59I 0.14 tolerated(0.94) benign(0) TCGA-34-5232-01 15 77020994 77020994 C T SCAPER Missense_Mutation p.E703K 0.19 tolerated(0.1) probably_damaging(0.999) TCGA-34-5232-01 15 79064110 79064110 G A ADAMTS7 Silent p.A731A 0.17 TCGA-34-5232-01 15 81593686 81593686 C T IL16 Missense_Mutation p.L1051F 0.25 deleterious(0) probably_damaging(0.997) TCGA-34-5232-01 15 85476424 85476424 G C SLC28A1 Missense_Mutation p.A378P 0.15 deleterious(0) probably_damaging(1) TCGA-34-5232-01 15 91483669 91483669 C T UNC45A Missense_Mutation p.T218M 0.12 deleterious(0) probably_damaging(0.953) TCGA-34-5232-01 16 2278471 2278471 C T E4F1 Missense_Mutation p.P86S 0.10 deleterious(0.03) benign(0.031) TCGA-34-5232-01 16 31896502 31896502 G T ZNF267 Missense_Mutation p.D51Y 0.16 tolerated(0.07) benign(0.099) TCGA-34-5232-01 16 33020494 33020494 C T IGHV3OR16-8 5'Flank 0.33 TCGA-34-5232-01 16 66943978 66943978 G T CDH16 Missense_Mutation p.T729N 0.19 deleterious(0) possibly_damaging(0.694) TCGA-34-5232-01 16 72992281 72992281 C T ZFHX3 Silent p.L588L 0.17 TCGA-34-5232-01 16 837656 837656 G C RPUSD1 Missense_Mutation p.R28G 0.12 tolerated(0.1) probably_damaging(0.993) TCGA-34-5232-01 16 84203840 84203840 C A DNAAF1 Missense_Mutation p.P469Q 0.11 tolerated_low_confidence(0.12) possibly_damaging(0.608) TCGA-34-5232-01 16 84516199 84516199 A G TLDC1 Missense_Mutation p.L359P 0.10 deleterious(0) probably_damaging(0.998) TCGA-34-5232-01 16 89289672 89289672 C T ZNF778 Silent p.Y75Y 0.07 TCGA-34-5232-01 17 10408585 10408585 A G MYH1 Missense_Mutation p.L777P 0.24 deleterious(0) probably_damaging(1) TCGA-34-5232-01 17 11882018 11882018 A - ZNF18 Frame_Shift_Del p.H303Tfs*23 0.20 TCGA-34-5232-01 17 12656471 12656471 T A MYOCD Missense_Mutation p.N622K 0.20 tolerated(0.41) benign(0.006) TCGA-34-5232-01 17 2598546 2598546 C A CLUH Missense_Mutation p.R819L 0.15 deleterious(0) probably_damaging(1) TCGA-34-5232-01 17 38142893 38142893 C G PSMD3 Silent p.L159L 0.13 TCGA-34-5232-01 17 38179470 38179470 C A MED24 Missense_Mutation p.G722C 0.13 deleterious(0) probably_damaging(1) TCGA-34-5232-01 17 42337271 42337271 C A SLC4A1 Missense_Mutation p.G172V 0.14 deleterious(0.03) possibly_damaging(0.596) TCGA-34-5232-01 17 47122358 47122358 A T IGF2BP1 Silent p.A442A 0.11 TCGA-34-5232-01 17 56355488 56355488 G - MPO Frame_Shift_Del p.R302Afs*132 0.18 TCGA-34-5232-01 17 74011538 74011538 C G EVPL Missense_Mutation p.G628R 0.16 tolerated(0.15) benign(0.063) TCGA-34-5232-01 17 7577097 7577097 C A TP53 Missense_Mutation p.D281Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-34-5232-01 18 43217030 43217030 T C SLC14A2 Silent p.I242I 0.15 TCGA-34-5232-01 18 56348415 56348415 G T MALT1 Nonsense_Mutation p.E75* 0.08 TCGA-34-5232-01 18 67794916 67794916 C A RTTN Missense_Mutation p.A1069S 0.11 tolerated(0.6) benign(0.075) TCGA-34-5232-01 18 67794917 67794917 C A RTTN Missense_Mutation p.M1068I 0.13 tolerated(0.51) benign(0.003) TCGA-34-5232-01 19 12461632 12461632 T C ZNF442 Missense_Mutation p.E256G 0.17 deleterious(0.04) probably_damaging(0.999) TCGA-34-5232-01 19 13470527 13470527 A G CACNA1A Missense_Mutation p.W291R 0.31 probably_damaging(0.934) TCGA-34-5232-01 19 18233561 18233561 G A MAST3 Silent p.S104S 0.18 TCGA-34-5232-01 19 18277949 18277949 G T PIK3R2 Silent p.L523L 0.07 TCGA-34-5232-01 19 19104998 19104998 G C SUGP2 3'UTR 0.18 TCGA-34-5232-01 19 22363491 22363491 C G ZNF676 Missense_Mutation p.G343A 0.10 deleterious(0) possibly_damaging(0.672) TCGA-34-5232-01 19 30934833 30934833 G T ZNF536 Missense_Mutation p.D122Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-34-5232-01 19 31040279 31040279 G A ZNF536 Silent p.P1251P 0.15 TCGA-34-5232-01 19 36004032 36004032 G T DMKN Missense_Mutation p.Q116K 0.13 deleterious(0) probably_damaging(0.915) TCGA-34-5232-01 19 36050049 36050049 G A ATP4A Silent p.C367C 0.10 TCGA-34-5232-01 19 37129641 37129641 G C ZNF461 Missense_Mutation p.Q536E 0.13 tolerated(0.12) benign(0.006) TCGA-34-5232-01 19 40030304 40030304 T A EID2 Missense_Mutation p.Y139F 0.12 tolerated(0.12) benign(0.294) TCGA-34-5232-01 19 42219050 42219050 T C CEACAM5 Silent p.N195N 0.10 TCGA-34-5232-01 19 43698611 43698611 G C PSG4 Nonsense_Mutation p.S375* 0.13 TCGA-34-5232-01 19 48619186 48619186 G A LIG1 Missense_Mutation p.R874W 0.09 deleterious(0) probably_damaging(1) TCGA-34-5232-01 19 51981896 51981896 C A CEACAM18 Silent p.L61L 0.08 TCGA-34-5232-01 19 53384206 53384206 G C ZNF320 Silent p.G391G 0.12 TCGA-34-5232-01 19 53643491 53643491 C A ZNF347 3'UTR 0.17 TCGA-34-5232-01 19 54711428 54711428 C T RPS9 Silent p.D190D 0.19 TCGA-34-5232-01 19 54849409 54849409 C T LILRA4 Silent p.R151R 0.12 TCGA-34-5232-01 19 55692997 55692997 A T PTPRH 3'UTR 0.12 TCGA-34-5232-01 19 55692998 55692998 G T PTPRH 3'UTR 0.12 TCGA-34-5232-01 19 57133945 57133945 G T ZNF71 Silent p.R430R 0.10 TCGA-34-5232-01 19 9012465 9012465 C T MUC16 Intron 0.11 TCGA-34-5232-01 1 113264887 113264887 C T FAM19A3 Missense_Mutation p.T11M 0.16 tolerated_low_confidence(0.57) benign(0.019) TCGA-34-5232-01 1 115222975 115222975 G T AMPD1 Silent p.V257V 0.13 TCGA-34-5232-01 1 116206878 116206878 G T VANGL1 Silent p.L267L 0.13 TCGA-34-5232-01 1 118497236 118497236 T A WDR3 Missense_Mutation p.Y799N 0.17 deleterious(0.01) benign(0.261) TCGA-34-5232-01 1 12416115 12416115 T G VPS13D Missense_Mutation p.I3280S 0.22 benign(0.279) TCGA-34-5232-01 1 173455423 173455423 G C PRDX6 Silent p.L143L 0.13 TCGA-34-5232-01 1 179079924 179079924 C T ABL2 Intron 0.13 TCGA-34-5232-01 1 179604969 179604969 G T TDRD5 Silent p.R489R 0.10 TCGA-34-5232-01 1 183495814 183495814 A G SMG7 Silent p.K132K 0.11 TCGA-34-5232-01 1 201868784 201868784 G A LMOD1 Missense_Mutation p.H453Y 0.19 probably_damaging(0.998) TCGA-34-5232-01 1 215848335 215848335 G T USH2A Silent p.L4306L 0.13 TCGA-34-5232-01 1 215848336 215848336 A T USH2A Missense_Mutation p.L4306H 0.13 possibly_damaging(0.72) TCGA-34-5232-01 1 237947904 237947904 G A RYR2 Missense_Mutation p.V4298M 0.20 benign(0.183) TCGA-34-5232-01 1 247614352 247614352 C T OR2B11 Silent p.R311R 0.13 TCGA-34-5232-01 1 247875519 247875519 T A OR6F1 Missense_Mutation p.D180V 0.16 deleterious(0) possibly_damaging(0.898) TCGA-34-5232-01 1 31349705 31349705 G - SDC3 Frame_Shift_Del p.S189Afs*15 0.11 TCGA-34-5232-01 1 55089020 55089020 C G FAM151A Missense_Mutation p.A17P 0.09 deleterious(0.02) possibly_damaging(0.556) TCGA-34-5232-01 1 62593720 62593720 C G INADL Missense_Mutation p.A1707G 0.13 deleterious(0.03) probably_damaging(0.998) TCGA-34-5232-01 1 63044554 63044554 T C DOCK7 Missense_Mutation p.H652R 0.18 deleterious(0) probably_damaging(1) TCGA-34-5232-01 1 70573448 70573448 C G LRRC7 Missense_Mutation p.T1482S 0.13 tolerated(0.15) possibly_damaging(0.6) TCGA-34-5232-01 1 74670968 74670968 G T FPGT Missense_Mutation p.V413L 0.14 tolerated(0.21) benign(0.026) TCGA-34-5232-01 1 76198827 76198827 A T ACADM Intron 0.17 TCGA-34-5232-01 1 94654471 94654471 A C ARHGAP29 Missense_Mutation p.F535V 0.16 tolerated(0.56) benign(0.219) TCGA-34-5232-01 1 9775958 9775958 C T PIK3CD Missense_Mutation p.A141V 0.16 tolerated(0.5) benign(0.001) TCGA-34-5232-01 20 21689949 21689949 C A PAX1 Silent p.G383G 0.16 TCGA-34-5232-01 20 34099248 34099248 C T CEP250 Silent p.I2374I 0.19 TCGA-34-5232-01 20 57876615 57876615 C T EDN3 Missense_Mutation p.P68L 0.17 tolerated(0.25) benign(0.001) TCGA-34-5232-01 20 5922668 5922668 C G TRMT6 Missense_Mutation p.Q347H 0.16 deleterious(0.02) possibly_damaging(0.497) TCGA-34-5232-01 21 19716282 19716282 G T TMPRSS15 Missense_Mutation p.L423I 0.14 deleterious(0) probably_damaging(0.984) TCGA-34-5232-01 21 33370927 33370927 G T HUNK Silent p.P525P 0.17 TCGA-34-5232-01 21 37618828 37618828 C T DOPEY2 Missense_Mutation p.P1517L 0.15 deleterious(0) probably_damaging(0.953) TCGA-34-5232-01 21 43161931 43161931 C A RIPK4 Silent p.P474P 0.17 TCGA-34-5232-01 21 47633740 47633740 T C LSS Missense_Mutation p.T341A 0.15 tolerated(0.55) benign(0.034) TCGA-34-5232-01 22 50694044 50694044 C T MAPK12 Silent p.E257E 0.12 TCGA-34-5232-01 2 11342232 11342232 T G ROCK2 Silent p.A855A 0.09 TCGA-34-5232-01 2 136579614 136579614 C T LCT Missense_Mutation p.S321N 0.13 tolerated(0.62) benign(0.002) TCGA-34-5232-01 2 162242083 162242083 G C PSMD14 Splice_Site p.X190_splice 0.09 TCGA-34-5232-01 2 163003990 163003990 C T GCG Missense_Mutation p.D43N 0.14 tolerated(0.12) benign(0.007) TCGA-34-5232-01 2 1691427 1691427 C G PXDN Missense_Mutation p.K131N 0.14 deleterious(0.03) benign(0.026) TCGA-34-5232-01 2 175618289 175618289 G T CHRNA1 Silent p.I265I 0.12 TCGA-34-5232-01 2 179236930 179236930 C T OSBPL6 Silent p.V480V 0.08 TCGA-34-5232-01 2 179425376 179425376 G T TTN Missense_Mutation p.H28495N 0.09 TCGA-34-5232-01 2 179576077 179576077 C T TTN Splice_Site p.X9296_splice 0.18 TCGA-34-5232-01 2 220034386 220034386 C T SLC23A3 Missense_Mutation p.M59I 0.13 tolerated(0.25) benign(0.005) TCGA-34-5232-01 2 231120221 231120221 C T SP140 Missense_Mutation p.S405F 0.13 tolerated(0.42) benign(0.193) TCGA-34-5232-01 2 29287726 29287726 G A C2orf71 3'UTR 0.14 TCGA-34-5232-01 2 48915374 48915374 G T LHCGR Missense_Mutation p.T521N 0.10 deleterious(0.04) benign(0.279) TCGA-34-5232-01 2 77746099 77746099 G A LRRTM4 Missense_Mutation p.A299V 0.15 tolerated(0.07) benign(0.177) TCGA-34-5232-01 2 79312367 79312367 G T REG1B Missense_Mutation p.S159Y 0.11 deleterious(0) probably_damaging(0.942) TCGA-34-5232-01 2 79312368 79312368 A T REG1B Missense_Mutation p.S159T 0.12 deleterious(0.01) benign(0.205) TCGA-34-5232-01 2 95484669 95484669 C T ANKRD20A8P Intron 0.07 TCGA-34-5232-01 3 111993834 111993834 T A SLC9C1 Missense_Mutation p.S175C 0.13 tolerated(0.16) benign(0.137) TCGA-34-5232-01 3 120049996 120049996 T A LRRC58 3'UTR 0.11 TCGA-34-5232-01 3 123667907 123667907 T C CCDC14 Missense_Mutation p.E149G 0.12 tolerated(0.05) benign(0) TCGA-34-5232-01 3 142177868 142177868 C T ATR Missense_Mutation p.E2479K 0.26 deleterious(0) probably_damaging(1) TCGA-34-5232-01 3 14499474 14499474 T - SLC6A6 Frame_Shift_Del p.L206Cfs*11 0.20 TCGA-34-5232-01 3 145806480 145806480 T C PLOD2 Missense_Mutation p.I300V 0.09 tolerated(0.85) benign(0.002) TCGA-34-5232-01 3 148558740 148558740 G T CPB1 Missense_Mutation p.G151V 0.11 deleterious(0) probably_damaging(1) TCGA-34-5232-01 3 148614388 148614388 G T CPA3 Missense_Mutation p.G383V 0.19 deleterious(0) probably_damaging(0.998) TCGA-34-5232-01 3 155560403 155560403 G A SLC33A1 Missense_Mutation p.L261F 0.08 tolerated(0.08) benign(0.034) TCGA-34-5232-01 3 178916726 178916726 G T PIK3CA Missense_Mutation p.R38L 0.44 deleterious(0.01) probably_damaging(0.998) TCGA-34-5232-01 3 179525562 179525562 C T PEX5L Missense_Mutation p.E526K 0.05 deleterious(0) probably_damaging(0.985) TCGA-34-5232-01 3 33135655 33135655 C T TMPPE Silent p.A11A 0.16 TCGA-34-5232-01 3 38138086 38138086 C T DLEC1 Missense_Mutation p.S733F 0.13 tolerated(0.66) benign(0.021) TCGA-34-5232-01 3 43621948 43621948 C T ANO10 Silent p.T163T 0.12 TCGA-34-5232-01 3 9036126 9036126 G A SRGAP3 Missense_Mutation p.S770L 0.18 tolerated(0.27) probably_damaging(0.996) TCGA-34-5232-01 4 114158196 114158196 G C ANK2 Silent p.V179V 0.14 TCGA-34-5232-01 4 114158197 114158197 G T ANK2 Missense_Mutation p.A180S 0.15 benign(0.203) TCGA-34-5232-01 4 115858645 115858645 T C NDST4 Silent p.P412P 0.12 TCGA-34-5232-01 4 156634427 156634427 C A GUCY1A3 Missense_Mutation p.Q422K 0.13 deleterious(0) probably_damaging(0.954) TCGA-34-5232-01 4 162402262 162402262 A T FSTL5 Silent p.A506A 0.15 TCGA-34-5232-01 4 166935601 166935601 G T TLL1 Missense_Mutation p.D311Y 0.13 deleterious(0) probably_damaging(1) TCGA-34-5232-01 4 189018262 189018262 C A TRIML2 Missense_Mutation p.S183I 0.14 deleterious(0) probably_damaging(0.955) TCGA-34-5232-01 4 189018263 189018263 T A TRIML2 Missense_Mutation p.S183C 0.15 deleterious(0.03) probably_damaging(0.969) TCGA-34-5232-01 4 46312249 46312249 G A GABRA2 Missense_Mutation p.P167L 0.20 deleterious(0.04) possibly_damaging(0.847) TCGA-34-5232-01 5 13776797 13776797 G T DNAH5 Silent p.R3042R 0.14 TCGA-34-5232-01 5 139838244 139838244 A T ANKHD1 Missense_Mutation p.D426V 0.11 unknown(0) TCGA-34-5232-01 5 140073533 140073533 T G HARS2 Missense_Mutation p.L66R 0.11 deleterious(0.04) benign(0.015) TCGA-34-5232-01 5 140188235 140188235 C T PCDHA4 Missense_Mutation p.A488V 0.18 deleterious_low_confidence(0) possibly_damaging(0.663) TCGA-34-5232-01 5 150518926 150518926 G C ANXA6 Silent p.S64S 0.14 TCGA-34-5232-01 5 156766092 156766092 C A CYFIP2 Silent p.R779R 0.27 TCGA-34-5232-01 5 159839520 159839520 G A SLU7 Nonsense_Mutation p.R193* 0.14 TCGA-34-5232-01 5 178566994 178566994 G A ADAMTS2 Missense_Mutation p.L558F 0.13 tolerated(0.06) probably_damaging(0.951) TCGA-34-5232-01 5 180030235 180030235 G T FLT4 Missense_Mutation p.S1350Y 0.15 deleterious_low_confidence(0.01) benign(0.212) TCGA-34-5232-01 5 36104168 36104168 C T LMBRD2 Missense_Mutation p.D690N 0.12 tolerated(0.57) benign(0) TCGA-34-5232-01 5 40692581 40692581 T C PTGER4 3'UTR 0.22 TCGA-34-5232-01 5 41201677 41201677 G T C6 Missense_Mutation p.P95T 0.16 deleterious(0) probably_damaging(0.998) TCGA-34-5232-01 5 59940622 59940622 T A DEPDC1B Missense_Mutation p.N220I 0.13 deleterious(0) probably_damaging(0.999) TCGA-34-5232-01 5 63257089 63257089 G T HTR1A Missense_Mutation p.A153D 0.18 deleterious(0.02) probably_damaging(1) TCGA-34-5232-01 5 89999529 89999529 A T GPR98 Missense_Mutation p.N2735Y 0.11 probably_damaging(0.979) TCGA-34-5232-01 6 106554352 106554352 G A PRDM1 Missense_Mutation p.G627E 0.16 deleterious(0) probably_damaging(0.992) TCGA-34-5232-01 6 110746252 110746252 A G SLC22A16 Silent p.L520L 0.13 TCGA-34-5232-01 6 116263644 116263644 C A FRK Missense_Mutation p.R484L 0.08 deleterious(0.03) benign(0) TCGA-34-5232-01 6 25868572 25868572 T C SLC17A3 Missense_Mutation p.K15R 0.21 tolerated(0.26) benign(0.003) TCGA-34-5232-01 6 31749681 31749681 G A VARS Missense_Mutation p.R764W 0.20 deleterious(0) possibly_damaging(0.766) TCGA-34-5232-01 6 33288240 33288240 C T DAXX Missense_Mutation p.E390K 0.15 deleterious(0.01) benign(0.28) TCGA-34-5232-01 6 36298396 36298396 G C C6orf222 Silent p.A24A 0.13 TCGA-34-5232-01 6 52268702 52268702 C T PAQR8 Missense_Mutation p.R231C 0.17 deleterious(0) probably_damaging(1) TCGA-34-5232-01 7 100361426 100361426 C G ZAN Intron 0.11 TCGA-34-5232-01 7 106508642 106508642 G T PIK3CG Missense_Mutation p.W212C 0.12 tolerated(0.18) benign(0) TCGA-34-5232-01 7 140706181 140706181 T A MRPS33 3'UTR 0.14 TCGA-34-5232-01 7 142013242 142013242 G A TRBV4-1 Missense_Mutation p.G33R 0.17 tolerated(0.35) probably_damaging(0.956) TCGA-34-5232-01 7 142637536 142637536 G A C7orf34 Silent p.S102S 0.16 TCGA-34-5232-01 7 143657764 143657764 G C OR2F1 Missense_Mutation p.R234T 0.12 deleterious(0) probably_damaging(0.956) TCGA-34-5232-01 7 148312531 148312531 G A C7orf33 3'UTR 0.15 TCGA-34-5232-01 7 150324980 150324980 A G GIMAP6 Missense_Mutation p.Y236H 0.15 tolerated(0.12) probably_damaging(0.982) TCGA-34-5232-01 7 25218815 25218815 C T C7orf31 Missense_Mutation p.R38H 0.13 tolerated(0.11) benign(0.147) TCGA-34-5232-01 7 30795128 30795128 G A INMT Silent p.P151P 0.26 TCGA-34-5232-01 7 31018861 31018861 C G GHRHR 3'UTR 0.11 TCGA-34-5232-01 7 31855568 31855568 C T PDE1C Missense_Mutation p.E655K 0.10 tolerated_low_confidence(0.07) benign(0.01) TCGA-34-5232-01 7 63726322 63726322 A T ZNF679 Missense_Mutation p.K104I 0.15 deleterious(0) probably_damaging(0.997) TCGA-34-5232-01 7 71175877 71175877 C A WBSCR17 Silent p.V544V 0.11 TCGA-34-5232-01 7 94953811 94953811 G A PON1 5'UTR 0.17 TCGA-34-5232-01 7 95442571 95442571 T C DYNC1I1 Missense_Mutation p.M96T 0.10 tolerated(0.59) benign(0.103) TCGA-34-5232-01 7 98488019 98488019 C T TRRAP Missense_Mutation p.T71I 0.15 possibly_damaging(0.507) TCGA-34-5232-01 8 113331091 113331091 C T CSMD3 Missense_Mutation p.M2445I 0.24 deleterious(0.02) possibly_damaging(0.602) TCGA-34-5232-01 8 113585850 113585850 C A CSMD3 Missense_Mutation p.G1308C 0.13 deleterious(0) probably_damaging(1) TCGA-34-5232-01 8 120754867 120754867 G A TAF2 Nonsense_Mutation p.R1082* 0.06 TCGA-34-5232-01 8 139164842 139164842 C A FAM135B Missense_Mutation p.G626W 0.22 deleterious(0) possibly_damaging(0.766) TCGA-34-5232-01 8 143412282 143412282 C T TSNARE1 Silent p.T291T 0.12 TCGA-34-5232-01 8 144941397 144941397 C G EPPK1 Missense_Mutation p.V2009L 0.13 possibly_damaging(0.484) TCGA-34-5232-01 8 144993462 144993462 G A PLEC Silent p.T3646T 0.10 TCGA-34-5232-01 8 30557630 30557630 G A GSR Silent p.S221S 0.19 TCGA-34-5232-01 8 35631953 35631953 G T UNC5D Missense_Mutation p.G872V 0.30 deleterious(0) probably_damaging(1) TCGA-34-5232-01 8 56711626 56711626 A T TGS1 Missense_Mutation p.N566Y 0.12 deleterious(0.02) benign(0.069) TCGA-34-5232-01 8 69000007 69000007 G A PREX2 Silent p.R692R 0.10 TCGA-34-5232-01 8 77765739 77765739 C G ZFHX4 Missense_Mutation p.N2194K 0.11 probably_damaging(0.991) TCGA-34-5232-01 8 93017259 93017259 G A RUNX1T1 Intron 0.15 TCGA-34-5232-01 9 114490198 114490198 C T C9orf84 Missense_Mutation p.D453N 0.18 tolerated(0.25) benign(0.069) TCGA-34-5232-01 9 120470927 120470927 C G TLR4 Missense_Mutation p.D60E 0.17 deleterious(0) probably_damaging(1) TCGA-34-5232-01 9 123287340 123287340 G A CDK5RAP2 Missense_Mutation p.S339F 0.11 deleterious(0) benign(0.012) TCGA-34-5232-01 9 125551578 125551578 G C OR5C1 Missense_Mutation p.A123P 0.12 deleterious(0) probably_damaging(0.998) TCGA-34-5232-01 9 21239830 21239830 C A IFNA14 Missense_Mutation p.R35S 0.24 deleterious(0.05) possibly_damaging(0.903) TCGA-34-5232-01 9 40716029 40716029 G A FAM74A3 RNA 0.13 TCGA-34-5232-01 9 74319524 74319524 C T TMEM2 Missense_Mutation p.V1061I 0.13 tolerated(1) benign(0) TCGA-34-5232-01 9 99525824 99525824 C T ZNF510 Missense_Mutation p.V74M 0.04 deleterious(0) probably_damaging(1) TCGA-34-5232-01 X 102192749 102192749 C T RAB40AL Missense_Mutation p.T168M 0.16 tolerated(0.19) benign(0.212) TCGA-34-5232-01 X 105187985 105187985 C T NRK Silent p.H1338H 0.11 TCGA-34-5232-01 X 118893503 118893503 G T SOWAHD Missense_Mutation p.K291N 0.14 tolerated(0.05) probably_damaging(0.941) TCGA-34-5232-01 X 129055540 129055540 C A UTP14A Missense_Mutation p.P442Q 0.06 deleterious(0.02) probably_damaging(0.945) TCGA-34-5232-01 X 136648937 136648937 C A ZIC3 Missense_Mutation p.N29K 0.25 tolerated_low_confidence(0.69) benign(0.011) TCGA-34-5232-01 X 136648938 136648938 C A ZIC3 Missense_Mutation p.R30S 0.25 tolerated_low_confidence(0.15) probably_damaging(0.931) TCGA-34-5232-01 X 142718580 142718580 G A SLITRK4 Silent p.N115N 0.13 TCGA-34-5232-01 X 144329162 144329162 C T SPANXN1 Missense_Mutation p.S19F 0.10 deleterious(0) probably_damaging(0.999) TCGA-34-5232-01 X 148797858 148797858 C A MAGEA11 Silent p.R238R 0.14 TCGA-34-5232-01 X 149963706 149963706 G T CD99L2 Missense_Mutation p.R135S 0.06 tolerated(0.81) benign(0.298) TCGA-34-5232-01 X 149963707 149963707 G T CD99L2 Silent p.G134G 0.06 TCGA-34-5232-01 X 150868563 150868563 G C PRRG3 Missense_Mutation p.E35Q 0.13 deleterious(0) probably_damaging(0.957) TCGA-34-5232-01 X 151869605 151869605 C T MAGEA6 Missense_Mutation p.P99S 0.11 tolerated(0.06) benign(0.04) TCGA-34-5232-01 X 153586868 153586868 G T FLNA Silent p.R1515R 0.14 TCGA-34-5232-01 X 27766598 27766598 C T DCAF8L2 Missense_Mutation p.A529V 0.23 deleterious(0.02) possibly_damaging(0.666) TCGA-34-5232-01 X 30327353 30327353 C A NR0B1 Missense_Mutation p.C43F 0.15 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-34-5232-01 X 40450618 40450618 G T ATP6AP2 Splice_Site p.X100_splice 0.18 TCGA-34-5232-01 X 48047124 48047124 C A SSX5 Missense_Mutation p.E211D 0.14 deleterious(0.03) probably_damaging(0.998) TCGA-34-5232-01 X 48547766 48547766 C T WAS Silent p.L466L 0.20 TCGA-34-5232-01 X 48801472 48801472 C T OTUD5 Missense_Mutation p.A223T 0.13 deleterious(0) probably_damaging(1) TCGA-34-5232-01 X 48825896 48825896 C A KCND1 Silent p.R261R 0.10 TCGA-34-5232-01 X 53611204 53611204 C A HUWE1 Missense_Mutation p.E1701D 0.11 benign(0.001) TCGA-34-5232-01 X 54948716 54948716 C G TRO Missense_Mutation p.L13V 0.26 tolerated_low_confidence(1) unknown(0) TCGA-34-5232-01 X 68060180 68060180 G A EFNB1 Missense_Mutation p.A242T 0.10 tolerated(0.07) possibly_damaging(0.484) TCGA-34-5232-01 X 72433953 72433953 C T NAP1L2 Missense_Mutation p.E126K 0.09 deleterious(0) probably_damaging(0.992) TCGA-34-5232-01 X 73960441 73960441 G T KIAA2022 Silent p.S1317S 0.19 TCGA-34-5232-01 X 74649009 74649009 G T ZDHHC15 Silent p.S169S 0.11 TCGA-34-5232-01 X 83352800 83352800 A G RPS6KA6 Silent p.L611L 0.14 TCGA-34-5232-01 X 91132779 91132779 A T PCDH11X Missense_Mutation p.S514C 0.12 deleterious(0.02) possibly_damaging(0.838) TCGA-34-5232-01 X 99662031 99662031 T A PCDH19 Missense_Mutation p.N522I 0.10 deleterious(0) probably_damaging(0.994) TCGA-34-5234-01 10 104572554 104572554 C T WBP1L Silent p.S186S 0.10 TCGA-34-5234-01 10 132944776 132944776 T G TCERG1L Silent p.A394A 0.20 TCGA-34-5234-01 10 17362814 17362814 T A ST8SIA6 3'UTR 0.19 TCGA-34-5234-01 11 102822866 102822866 C A MMP13 Missense_Mutation p.G225V 0.09 deleterious(0) probably_damaging(1) TCGA-34-5234-01 11 102822867 102822867 C A MMP13 Missense_Mutation p.G225C 0.08 deleterious(0) probably_damaging(1) TCGA-34-5234-01 11 118939986 118939986 C T VPS11 Silent p.L89L 0.10 TCGA-34-5234-01 11 123886791 123886791 C A OR10G4 Silent p.P170P 0.05 TCGA-34-5234-01 11 123909270 123909270 T A OR10G7 Missense_Mutation p.T147S 0.05 tolerated(0.14) possibly_damaging(0.794) TCGA-34-5234-01 11 124857428 124857428 A G CCDC15 Missense_Mutation p.K436E 0.11 tolerated(0.38) benign(0.079) TCGA-34-5234-01 11 128781411 128781411 G T KCNJ5 Silent p.L81L 0.08 TCGA-34-5234-01 11 131781454 131781454 A G NTM Missense_Mutation p.T27A 0.09 tolerated(1) benign(0.005) TCGA-34-5234-01 11 21596612 21596612 C A NELL1 3'UTR 0.13 TCGA-34-5234-01 11 55371405 55371405 C A OR4C11 Missense_Mutation p.G149W 0.21 deleterious(0) probably_damaging(0.998) TCGA-34-5234-01 11 55594722 55594722 G T OR5L2 Missense_Mutation p.A10S 0.09 tolerated(0.13) benign(0.004) TCGA-34-5234-01 11 55681406 55681406 T A OR5W2 Missense_Mutation p.Y218F 0.10 deleterious(0) probably_damaging(0.999) TCGA-34-5234-01 11 57958868 57958868 G C OR9Q2 Missense_Mutation p.R302S 0.17 tolerated(0.1) benign(0.071) TCGA-34-5234-01 11 61026208 61026208 G T VWCE Missense_Mutation p.T936N 0.13 tolerated_low_confidence(0.06) benign(0.039) TCGA-34-5234-01 11 62297927 62297927 G A AHNAK Missense_Mutation p.P1321L 0.05 probably_damaging(0.979) TCGA-34-5234-01 11 62298339 62298339 T C AHNAK Missense_Mutation p.K1184E 0.07 possibly_damaging(0.769) TCGA-34-5234-01 11 828686 828686 C G EFCAB4A Missense_Mutation p.R27G 0.09 tolerated(0.15) benign(0.007) TCGA-34-5234-01 11 8435164 8435164 C G STK33 Missense_Mutation p.V408L 0.09 tolerated(0.1) benign(0) TCGA-34-5234-01 11 85610060 85610060 T C CCDC83 Splice_Site p.X224_splice 0.09 TCGA-34-5234-01 12 14689564 14689564 T A PLBD1 Missense_Mutation p.K213N 0.14 tolerated(0.36) benign(0.053) TCGA-34-5234-01 12 22678621 22678621 T C C2CD5 Missense_Mutation p.N123S 0.09 tolerated(0.11) benign(0.001) TCGA-34-5234-01 12 40748141 40748141 A G LRRK2 Missense_Mutation p.H2206R 0.15 tolerated(0.44) benign(0.001) TCGA-34-5234-01 12 45168619 45168619 T C NELL2 Missense_Mutation p.Q352R 0.10 tolerated(0.05) benign(0.446) TCGA-34-5234-01 12 66765701 66765701 T C GRIP1 Missense_Mutation p.I877V 0.09 deleterious(0.01) benign(0.03) TCGA-34-5234-01 12 75444382 75444382 G A KCNC2 Missense_Mutation p.P468L 0.09 deleterious(0) probably_damaging(1) TCGA-34-5234-01 12 94641745 94641745 C G PLXNC1 Missense_Mutation p.R819G 0.06 tolerated(0.36) benign(0.004) TCGA-34-5234-01 13 109644761 109644761 G T MYO16 Missense_Mutation p.G781C 0.20 deleterious(0) probably_damaging(0.999) TCGA-34-5234-01 13 78472379 78472379 C A EDNRB Nonsense_Mutation p.G519* 0.20 TCGA-34-5234-01 14 20403871 20403871 G C OR4K1 Missense_Mutation p.G16R 0.08 deleterious(0) possibly_damaging(0.703) TCGA-34-5234-01 14 24573040 24573040 C T PCK2 Missense_Mutation p.S597F 0.11 deleterious(0) probably_damaging(0.998) TCGA-34-5234-01 14 50130032 50130032 C G POLE2 Splice_Site p.X252_splice 0.13 TCGA-34-5234-01 14 75558095 75558095 G A NEK9 Missense_Mutation p.P774S 0.10 tolerated_low_confidence(0.59) benign(0.053) TCGA-34-5234-01 14 90263621 90263621 T C EFCAB11 Missense_Mutation p.E153G 0.09 deleterious(0) possibly_damaging(0.886) TCGA-34-5234-01 14 96783592 96783592 G T ATG2B Missense_Mutation p.R1034S 0.10 tolerated(0.27) possibly_damaging(0.494) TCGA-34-5234-01 15 22473050 22473050 C A IGHV4OR15-8 Missense_Mutation p.S74I 0.05 deleterious(0.03) benign(0.093) TCGA-34-5234-01 15 25296707 25296707 G C SNORD116-1 RNA 0.12 TCGA-34-5234-01 15 25479303 25479303 T A SNORD115-33 3'Flank 0.10 TCGA-34-5234-01 16 20563569 20563569 C A ACSM2B Missense_Mutation p.G264V 0.08 deleterious(0.01) probably_damaging(0.995) TCGA-34-5234-01 16 23197812 23197812 C T SCNN1G Missense_Mutation p.L74F 0.05 tolerated(0.41) probably_damaging(0.975) TCGA-34-5234-01 16 31382999 31382999 G A ITGAX Missense_Mutation p.R685H 0.08 deleterious(0.04) benign(0.187) TCGA-34-5234-01 16 50756589 50756589 G T NOD2 Missense_Mutation p.G924V 0.10 tolerated(0.12) benign(0.001) TCGA-34-5234-01 16 89650453 89650453 C A CPNE7 Silent p.I225I 0.09 TCGA-34-5234-01 17 10450814 10450814 C G MYH2 Missense_Mutation p.R109P 0.11 deleterious(0) probably_damaging(0.999) TCGA-34-5234-01 17 11642197 11642197 G T DNAH9 Missense_Mutation p.V1939L 0.08 possibly_damaging(0.895) TCGA-34-5234-01 17 2996153 2996153 G A OR1D2 Silent p.I46I 0.11 TCGA-34-5234-01 17 46847213 46847213 G T TTLL6 Missense_Mutation p.L763I 0.08 tolerated(0.13) benign(0.023) TCGA-34-5234-01 17 51900915 51900915 G A KIF2B Missense_Mutation p.R174H 0.09 deleterious(0) probably_damaging(0.977) TCGA-34-5234-01 17 59557280 59557280 G - TBX4 Frame_Shift_Del p.G248Dfs*22 0.13 TCGA-34-5234-01 17 7230235 7230235 G A NEURL4 Missense_Mutation p.P296L 0.07 deleterious(0.03) benign(0.024) TCGA-34-5234-01 18 14851580 14851580 C A ANKRD30B Missense_Mutation p.L1094I 0.17 deleterious(0.04) probably_damaging(0.953) TCGA-34-5234-01 18 54605772 54605772 A C WDR7 Missense_Mutation p.R1280S 0.10 deleterious(0) possibly_damaging(0.889) TCGA-34-5234-01 18 55317699 55317699 T A ATP8B1 Missense_Mutation p.Y1144F 0.08 tolerated(0.57) probably_damaging(0.979) TCGA-34-5234-01 18 60241357 60241357 C G ZCCHC2 Silent p.V681V 0.05 TCGA-34-5234-01 19 12429653 12429653 T A ZNF563 Nonsense_Mutation p.K396* 0.06 TCGA-34-5234-01 19 14517527 14517527 T C CD97 Silent p.F688F 0.07 TCGA-34-5234-01 19 2413785 2413785 G A TMPRSS9 Missense_Mutation p.E414K 0.09 deleterious(0.01) possibly_damaging(0.607) TCGA-34-5234-01 19 38911761 38911761 G C RASGRP4 Silent p.A96A 0.18 TCGA-34-5234-01 19 44515309 44515309 A G ZNF230 Missense_Mutation p.Y373C 0.18 deleterious(0) probably_damaging(0.992) TCGA-34-5234-01 19 52001375 52001375 A T SIGLEC12 Silent p.P434P 0.10 TCGA-34-5234-01 19 53913729 53913729 T A ZNF765 3'UTR 0.31 TCGA-34-5234-01 19 54963896 54963896 A G LENG8 Missense_Mutation p.N94D 0.13 tolerated(0.08) benign(0.133) TCGA-34-5234-01 19 9577721 9577721 C A ZNF560 Silent p.G634G 0.06 TCGA-34-5234-01 1 120342441 120342441 G T REG4 Silent p.I70I 0.08 TCGA-34-5234-01 1 120437090 120437090 C T ADAM30 Missense_Mutation p.V624I 0.08 tolerated(0.1) benign(0.135) TCGA-34-5234-01 1 179620065 179620065 G T TDRD5 Missense_Mutation p.G622W 0.09 deleterious(0) probably_damaging(1) TCGA-34-5234-01 1 181686390 181686390 G A CACNA1E Missense_Mutation p.V493M 0.15 deleterious(0) possibly_damaging(0.608) TCGA-34-5234-01 1 196748418 196748418 C A CFHR3 Missense_Mutation p.P62H 0.16 deleterious(0) probably_damaging(0.999) TCGA-34-5234-01 1 197874996 197874996 G A C1orf53 Missense_Mutation p.R112K 0.08 deleterious(0.04) probably_damaging(0.999) TCGA-34-5234-01 1 207104843 207104843 C G PIGR Missense_Mutation p.R733T 0.06 deleterious(0) possibly_damaging(0.52) TCGA-34-5234-01 1 216166446 216166446 G T USH2A Missense_Mutation p.P2241T 0.15 probably_damaging(1) TCGA-34-5234-01 1 230798897 230798897 C T COG2 Missense_Mutation p.S104L 0.12 deleterious(0.03) possibly_damaging(0.523) TCGA-34-5234-01 1 248112224 248112224 T A OR2L8 Missense_Mutation p.I22N 0.07 tolerated(0.29) benign(0.02) TCGA-34-5234-01 1 249212547 249212547 G T PGBD2 Missense_Mutation p.E588D 0.11 tolerated(0.16) benign(0.002) TCGA-34-5234-01 1 39798958 39798958 C T MACF1 Intron 0.09 TCGA-34-5234-01 1 42898960 42898960 C A ZMYND12 Splice_Site p.X277_splice 0.05 TCGA-34-5234-01 1 57257917 57257917 C T C1orf168 Missense_Mutation p.G190E 0.06 tolerated(0.91) benign(0.027) TCGA-34-5234-01 1 86252091 86252091 T C COL24A1 Silent p.P1335P 0.14 TCGA-34-5234-01 20 20592039 20592039 T C RALGAPA2 Missense_Mutation p.T574A 0.09 deleterious(0) benign(0.366) TCGA-34-5234-01 20 368895 368895 C T TRIB3 Missense_Mutation p.R81W 0.06 deleterious(0) probably_damaging(0.912) TCGA-34-5234-01 20 57581519 57581519 C T CTSZ Silent p.E55E 0.07 TCGA-34-5234-01 21 31973550 31973550 G T KRTAP22-1 Missense_Mutation p.W37C 0.08 unknown(0) TCGA-34-5234-01 21 46011355 46011355 C T KRTAP10-6 Silent p.T337T 0.09 TCGA-34-5234-01 22 19960691 19960691 G T ARVCF Missense_Mutation p.L797I 0.12 deleterious(0) benign(0.144) TCGA-34-5234-01 22 37627422 37627422 T C RAC2 Silent p.P99P 0.15 TCGA-34-5234-01 22 39966962 39966962 C T CACNA1I Missense_Mutation p.R69W 0.10 deleterious(0) possibly_damaging(0.907) TCGA-34-5234-01 22 40283671 40283671 C T ENTHD1 Missense_Mutation p.D28N 0.12 deleterious(0) probably_damaging(1) TCGA-34-5234-01 22 42423062 42423062 G A WBP2NL Silent p.P269P 0.10 TCGA-34-5234-01 2 130918802 130918802 T C SMPD4 Missense_Mutation p.Y342C 0.07 tolerated(0.22) benign(0.254) TCGA-34-5234-01 2 168104927 168104927 C A XIRP2 Missense_Mutation p.P2342Q 0.08 probably_damaging(0.988) TCGA-34-5234-01 2 179480100 179480100 A G TTN Missense_Mutation p.I16191T 0.12 TCGA-34-5234-01 2 179586757 179586757 G A TTN Nonsense_Mutation p.R7545* 0.05 TCGA-34-5234-01 2 189904261 189904261 C G COL5A2 Missense_Mutation p.G1221A 0.14 unknown(0) TCGA-34-5234-01 2 192206227 192206227 T C MYO1B Silent p.C129C 0.08 TCGA-34-5234-01 2 209217385 209217385 C T PIKFYVE Missense_Mutation p.T1908M 0.15 deleterious(0) probably_damaging(0.999) TCGA-34-5234-01 2 210642091 210642091 C G UNC80 Missense_Mutation p.D136E 0.08 benign(0.019) TCGA-34-5234-01 2 223917594 223917594 G T KCNE4 Missense_Mutation p.A16S 0.13 tolerated(0.39) benign(0.217) TCGA-34-5234-01 2 233210 233210 C A SH3YL1 Missense_Mutation p.A142S 0.19 tolerated(1) benign(0.015) TCGA-34-5234-01 2 75187240 75187240 A G POLE4 Missense_Mutation p.I103V 0.11 tolerated(0.1) possibly_damaging(0.557) TCGA-34-5234-01 2 99013218 99013218 G T CNGA3 Missense_Mutation p.V529L 0.10 deleterious(0) probably_damaging(0.988) TCGA-34-5234-01 3 1269556 1269556 G A CNTN6 Silent p.L79L 0.09 TCGA-34-5234-01 3 141535837 141535837 C A GRK7 Missense_Mutation p.P536H 0.08 tolerated(0.11) benign(0.235) TCGA-34-5234-01 3 160232769 160232769 T G KPNA4 Intron 0.09 TCGA-34-5234-01 3 164716462 164716462 C T SI Splice_Site p.X1469_splice 0.08 TCGA-34-5234-01 3 167508224 167508224 G T SERPINI1 Silent p.V105V 0.05 TCGA-34-5234-01 3 173996989 173996989 G T NLGN1 Missense_Mutation p.V400L 0.16 tolerated(0.42) possibly_damaging(0.666) TCGA-34-5234-01 3 182933804 182933804 T A MCF2L2 Nonsense_Mutation p.K817* 0.22 TCGA-34-5234-01 3 183884310 183884310 G T DVL3 Missense_Mutation p.G327V 0.15 deleterious(0) probably_damaging(1) TCGA-34-5234-01 3 184298229 184298229 A T EPHB3 Missense_Mutation p.M738L 0.16 deleterious(0.02) benign(0.413) TCGA-34-5234-01 3 2942484 2942484 T A CNTN4 Missense_Mutation p.N352K 0.05 deleterious(0) probably_damaging(0.988) TCGA-34-5234-01 3 4725142 4725142 G T ITPR1 Silent p.T1063T 0.16 TCGA-34-5234-01 4 123283401 123283401 A G KIAA1109 Silent p.%3D 0.08 TCGA-34-5234-01 4 126372912 126372912 T A FAT4 Missense_Mutation p.Y3581N 0.15 probably_damaging(0.962) TCGA-34-5234-01 4 144381636 144381636 A T GAB1 Missense_Mutation p.D630V 0.12 tolerated(1) possibly_damaging(0.795) TCGA-34-5234-01 4 153784805 153784805 A G ARFIP1 Silent p.Q47Q 0.20 TCGA-34-5234-01 4 187541112 187541112 C A FAT1 Nonsense_Mutation p.E2210* 0.13 TCGA-34-5234-01 4 25005391 25005391 G T LGI2 Silent p.I440I 0.09 TCGA-34-5234-01 4 2695513 2695513 G T FAM193A Missense_Mutation p.G711W 0.17 deleterious(0) probably_damaging(0.957) TCGA-34-5234-01 4 42965125 42965125 G T GRXCR1 Missense_Mutation p.V201L 0.10 tolerated(0.51) probably_damaging(0.996) TCGA-34-5234-01 4 71232480 71232480 T C SMR3A Silent p.Y58Y 0.05 TCGA-34-5234-01 4 8307739 8307739 G A HTRA3 Missense_Mutation p.G413E 0.06 deleterious(0.03) probably_damaging(0.957) TCGA-34-5234-01 5 109155491 109155491 G C MAN2A1 Missense_Mutation p.G744A 0.13 tolerated(0.63) benign(0.257) TCGA-34-5234-01 5 112769760 112769760 C - TSSK1B Frame_Shift_Del p.R260Gfs*142 0.17 TCGA-34-5234-01 5 127520118 127520118 A G SLC12A2 Silent p.Q1120Q 0.11 TCGA-34-5234-01 5 127636600 127636600 G T FBN2 Silent p.G2025G 0.07 TCGA-34-5234-01 5 127648420 127648420 G A FBN2 Silent p.T1595T 0.14 TCGA-34-5234-01 5 140208977 140208977 C A PCDHA6 Nonsense_Mutation p.S434* 0.18 TCGA-34-5234-01 5 141993567 141993567 C A FGF1 Silent p.P42P 0.19 TCGA-34-5234-01 5 172410956 172410956 T G ATP6V0E1 Silent p.G31G 0.10 TCGA-34-5234-01 5 32091056 32091056 A C PDZD2 Missense_Mutation p.Y2501S 0.15 deleterious(0.01) benign(0.118) TCGA-34-5234-01 5 33648940 33648940 C A ADAMTS12 Missense_Mutation p.C489F 0.18 deleterious(0) probably_damaging(0.993) TCGA-34-5234-01 5 86564648 86564649 CT - RASA1 Frame_Shift_Del p.L128Rfs*29 0.17 TCGA-34-5234-01 6 106999847 106999847 A G AIM1 Missense_Mutation p.I1403M 0.14 deleterious(0) probably_damaging(1) TCGA-34-5234-01 6 119324136 119324136 C A FAM184A Missense_Mutation p.L672F 0.12 tolerated(0.18) benign(0.059) TCGA-34-5234-01 6 136913588 136913588 T C MAP3K5 Missense_Mutation p.T1015A 0.09 tolerated(0.1) benign(0.058) TCGA-34-5234-01 6 149893447 149893447 A C GINM1 Silent p.T49T 0.09 TCGA-34-5234-01 6 169641988 169641988 A G THBS2 Missense_Mutation p.Y254H 0.12 tolerated_low_confidence(0.11) benign(0.001) TCGA-34-5234-01 6 30128523 30128523 G T TRIM10 Missense_Mutation p.A38D 0.11 tolerated(0.11) benign(0.002) TCGA-34-5234-01 6 42152507 42152507 C A GUCA1B 3'UTR 0.18 TCGA-34-5234-01 6 93953095 93953095 T A EPHA7 3'UTR 0.09 TCGA-34-5234-01 7 108212208 108212208 G T DNAJB9 Missense_Mutation p.C13F 0.11 tolerated(0.24) benign(0.007) TCGA-34-5234-01 7 117171036 117171036 C G CFTR Missense_Mutation p.I119M 0.08 tolerated(0.13) benign(0.273) TCGA-34-5234-01 7 127255381 127255381 G T PAX4 Intron 0.15 TCGA-34-5234-01 7 149502592 149502592 G T SSPO RNA 0.13 TCGA-34-5234-01 7 149520539 149520539 C A SSPO RNA 0.14 TCGA-34-5234-01 7 151879119 151879119 T C KMT2C Silent p.T1942T 0.08 TCGA-34-5234-01 7 17861181 17861181 T C SNX13 Missense_Mutation p.Y599C 0.08 deleterious(0) probably_damaging(0.99) TCGA-34-5234-01 7 21948030 21948030 G A CDCA7L Silent p.S133S 0.08 TCGA-34-5234-01 7 38937702 38937702 C G VPS41 Missense_Mutation p.D17H 0.07 deleterious(0.01) probably_damaging(0.99) TCGA-34-5234-01 7 41740073 41740073 T C INHBA 5'UTR 0.17 TCGA-34-5234-01 7 43506139 43506139 A C HECW1 Missense_Mutation p.E962A 0.08 deleterious(0) probably_damaging(0.97) TCGA-34-5234-01 7 44187342 44187342 C A GCK Missense_Mutation p.W258L 0.06 deleterious(0.01) probably_damaging(0.949) TCGA-34-5234-01 7 44579469 44579469 C A NPC1L1 Missense_Mutation p.R176L 0.07 tolerated(0.06) benign(0.082) TCGA-34-5234-01 7 45797684 45797684 C A SEPT7P2 RNA 0.14 TCGA-34-5234-01 7 47988034 47988034 C A PKD1L1 Missense_Mutation p.A2S 0.24 tolerated_low_confidence(0.1) benign(0.002) TCGA-34-5234-01 7 72865253 72865253 C A BAZ1B Silent p.L1168L 0.08 TCGA-34-5234-01 7 72891444 72891444 C A BAZ1B Missense_Mutation p.V783L 0.10 tolerated(0.82) benign(0.021) TCGA-34-5234-01 7 81350120 81350120 G C HGF Silent p.S404S 0.07 TCGA-34-5234-01 7 96251955 96251955 C A RP11-682N22.1 Intron 0.17 TCGA-34-5234-01 7 97823674 97823674 G A LMTK2 Silent p.R1299R 0.08 TCGA-34-5234-01 7 99669446 99669446 T C ZNF3 Missense_Mutation p.I221V 0.12 tolerated(0.13) benign(0.058) TCGA-34-5234-01 8 144894454 144894454 G A SCRIB Silent p.L296L 0.18 TCGA-34-5234-01 8 24775515 24775515 A T NEFM Missense_Mutation p.E716V 0.42 tolerated(0.28) probably_damaging(0.991) TCGA-34-5234-01 8 3216711 3216711 G T CSMD1 Silent p.G1089G 0.10 TCGA-34-5234-01 8 77761753 77761753 T A ZFHX4 Nonsense_Mutation p.Y1217* 0.08 TCGA-34-5234-01 8 82196796 82196796 A G FABP5 Silent p.V134V 0.15 TCGA-34-5234-01 8 93029532 93029532 T C RUNX1T1 Missense_Mutation p.R61G 0.07 deleterious(0.01) probably_damaging(0.967) TCGA-34-5234-01 8 98703374 98703374 T A MTDH Missense_Mutation p.W336R 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-34-5234-01 9 104071642 104071642 G - LPPR1 Frame_Shift_Del p.N180Tfs*9 0.25 TCGA-34-5234-01 9 109692032 109692032 C G ZNF462 Missense_Mutation p.Q1947E 0.12 benign(0.01) TCGA-34-5234-01 9 139642948 139642948 A G LCN6 5'UTR 0.21 TCGA-34-5234-01 9 32633524 32633524 C A TAF1L Missense_Mutation p.R685L 0.17 deleterious(0) probably_damaging(0.96) TCGA-34-5234-01 9 35853663 35853663 G T TMEM8B Missense_Mutation p.M415I 0.14 tolerated(0.75) benign(0.192) TCGA-34-5234-01 9 713340 713340 G T KANK1 Missense_Mutation p.Q858H 0.14 deleterious(0.05) probably_damaging(0.976) TCGA-34-5234-01 9 90345351 90345351 G T CTSL Silent p.V280V 0.10 TCGA-34-5234-01 9 95411767 95411767 C A IPPK Nonsense_Mutation p.E128* 0.14 TCGA-34-5234-01 X 100604735 100604735 C A BTK 3'UTR 0.08 TCGA-34-5234-01 X 100646000 100646000 T A RPL36A-HNRNPH2 Missense_Mutation p.%3D 0.09 TCGA-34-5234-01 X 100668339 100668339 C A HNRNPH2 3'UTR 0.11 TCGA-34-5234-01 X 10085324 10085324 C A WWC3 Missense_Mutation p.Q409K 0.07 tolerated(0.26) benign(0.209) TCGA-34-5234-01 X 10085325 10085325 A G WWC3 Missense_Mutation p.Q409R 0.07 tolerated(0.28) benign(0.36) TCGA-34-5234-01 X 101970387 101970388 - A GPRASP2 Frame_Shift_Ins p.P198Tfs*6 0.12 TCGA-34-5234-01 X 105280989 105280989 C A SERPINA7 Missense_Mutation p.A21S 0.15 tolerated(0.74) benign(0.053) TCGA-34-5234-01 X 106108822 106108822 C T TBC1D8B Missense_Mutation p.L796F 0.11 tolerated(0.42) benign(0.043) TCGA-34-5234-01 X 106890869 106890869 C A PRPS1 Silent p.A246A 0.06 TCGA-34-5234-01 X 106890870 106890870 A T PRPS1 Missense_Mutation p.I247F 0.06 tolerated(0.05) benign(0.404) TCGA-34-5234-01 X 109696544 109696544 C A RGAG1 Missense_Mutation p.P900Q 0.09 deleterious(0.05) benign(0.195) TCGA-34-5234-01 X 112025773 112025773 C A AMOT Missense_Mutation p.E745D 0.07 unknown(0) TCGA-34-5234-01 X 123499665 123499665 G T SH2D1A Missense_Mutation p.W64C 0.11 deleterious(0) probably_damaging(0.994) TCGA-34-5234-01 X 129270690 129270690 C T AIFM1 Missense_Mutation p.M364I 0.08 tolerated(1) benign(0.005) TCGA-34-5234-01 X 12939468 12939468 A G TLR8 Missense_Mutation p.H770R 0.16 tolerated(0.49) benign(0.003) TCGA-34-5234-01 X 134681116 134681116 T C DDX26B Missense_Mutation p.L223P 0.09 deleterious(0) probably_damaging(0.996) TCGA-34-5234-01 X 135313040 135313040 G T MAP7D3 Missense_Mutation p.S500Y 0.10 deleterious(0) probably_damaging(0.99) TCGA-34-5234-01 X 136649363 136649363 G A ZIC3 Silent p.G171G 0.11 TCGA-34-5234-01 X 137715007 137715007 C G FGF13 3'Flank 0.13 TCGA-34-5234-01 X 138856962 138856962 G T ATP11C Silent p.T704T 0.09 TCGA-34-5234-01 X 140994572 140994572 G A MAGEC1 Missense_Mutation p.S461N 0.10 deleterious_low_confidence(0.01) benign(0.213) TCGA-34-5234-01 X 142717525 142717525 C A SLITRK4 Missense_Mutation p.G467V 0.11 deleterious(0.02) possibly_damaging(0.447) TCGA-34-5234-01 X 144905921 144905921 T A SLITRK2 Missense_Mutation p.L660I 0.13 tolerated(0.19) benign(0.04) TCGA-34-5234-01 X 148035201 148035201 G T AFF2 Missense_Mutation p.D497Y 0.10 deleterious(0) probably_damaging(0.916) TCGA-34-5234-01 X 150891257 150891257 G A FATE1 3'UTR 0.06 TCGA-34-5234-01 X 151869553 151869553 C A MAGEA6 Missense_Mutation p.S81R 0.15 tolerated(0.19) benign(0.05) TCGA-34-5234-01 X 151900645 151900645 C G MAGEA12 Missense_Mutation p.E52D 0.07 tolerated(0.22) benign(0.082) TCGA-34-5234-01 X 153678436 153678436 G T FAM50A Nonsense_Mutation p.E297* 0.08 TCGA-34-5234-01 X 154115746 154115746 C A F8A1 Missense_Mutation p.P366H 0.03 deleterious(0) probably_damaging(0.95) TCGA-34-5234-01 X 154182256 154182256 T A F8 Missense_Mutation p.Y605F 0.10 deleterious(0) probably_damaging(0.999) TCGA-34-5234-01 X 154261815 154261815 G T FUNDC2 Missense_Mutation p.G91C 0.11 deleterious(0) probably_damaging(0.998) TCGA-34-5234-01 X 155003644 155003644 G A SPRY3 Silent p.Q37Q 0.11 TCGA-34-5234-01 X 18631345 18631345 G A CDKL5 Silent p.E742E 0.11 TCGA-34-5234-01 X 19368197 19368197 T C PDHA1 Missense_Mutation p.I125T 0.09 deleterious(0) probably_damaging(0.998) TCGA-34-5234-01 X 21861352 21861352 C A MBTPS2 Missense_Mutation p.P47H 0.11 deleterious(0.02) benign(0.297) TCGA-34-5234-01 X 2951310 2951310 C A ARSH Missense_Mutation p.P525T 0.17 tolerated(0.06) benign(0.071) TCGA-34-5234-01 X 31090069 31090069 A G FTHL17 Translation_Start_Site p.M1? 0.12 deleterious(0) probably_damaging(0.98) TCGA-34-5234-01 X 37670075 37670075 G T CYBB Nonsense_Mutation p.E540* 0.06 TCGA-34-5234-01 X 39933922 39933922 G A BCOR Missense_Mutation p.S226F 0.08 deleterious(0) probably_damaging(0.929) TCGA-34-5234-01 X 44913153 44913154 - T KDM6A Frame_Shift_Ins p.L277Ffs*6 0.11 TCGA-34-5234-01 X 54975507 54975507 C A PFKFB1 Splice_Site p.X331_splice 0.12 TCGA-34-5234-01 X 55249059 55249059 G C PAGE5 Missense_Mutation p.D86H 0.09 deleterious(0.01) probably_damaging(0.99) TCGA-34-5234-01 X 55479403 55479403 C G MAGEH1 Missense_Mutation p.S199W 0.19 deleterious_low_confidence(0.03) probably_damaging(0.979) TCGA-34-5234-01 X 70367959 70367959 G T NLGN3 Silent p.P120P 0.13 TCGA-34-5234-01 X 70674030 70674030 T A TAF1 Missense_Mutation p.S1608R 0.10 deleterious(0) probably_damaging(1) TCGA-34-5234-01 X 77254002 77254002 C A ATP7A Missense_Mutation p.A455D 0.10 tolerated(0.27) benign(0.002) TCGA-34-5234-01 X 91133650 91133650 C A PCDH11X Missense_Mutation p.S804Y 0.10 tolerated(0.32) possibly_damaging(0.905) TCGA-34-5234-01 X 95993591 95993591 C T DIAPH2 Nonsense_Mutation p.R58* 0.06 TCGA-34-5234-01 X 99920283 99920283 G T SRPX2 Missense_Mutation p.K192N 0.18 deleterious(0.01) possibly_damaging(0.721) TCGA-34-5236-01 10 105185125 105185125 C T PDCD11 Missense_Mutation p.H1050Y 0.26 tolerated(0.33) benign(0.135) TCGA-34-5236-01 10 134563340 134563340 C A INPP5A Missense_Mutation p.N298K 0.20 deleterious(0.04) probably_damaging(0.952) TCGA-34-5236-01 10 29815957 29815957 C A SVIL Missense_Mutation p.G759C 0.17 deleterious(0.03) possibly_damaging(0.592) TCGA-34-5236-01 10 88446996 88446996 G T LDB3 Missense_Mutation p.G287V 0.27 tolerated(0.39) probably_damaging(0.999) TCGA-34-5236-01 11 104825679 104825679 T A CASP4 Missense_Mutation p.K19N 0.14 deleterious(0.04) probably_damaging(0.94) TCGA-34-5236-01 11 111866262 111866262 G T DIXDC1 Nonsense_Mutation p.E554* 0.10 TCGA-34-5236-01 11 113103955 113103955 G T NCAM1 Missense_Mutation p.G586W 0.11 deleterious(0) probably_damaging(1) TCGA-34-5236-01 11 117787940 117787940 C A TMPRSS13 Silent p.P167P 0.11 TCGA-34-5236-01 11 16339984 16339984 A G SOX6 Intron 0.07 TCGA-34-5236-01 11 17531252 17531252 G T USH1C Missense_Mutation p.P555H 0.12 tolerated_low_confidence(0.09) possibly_damaging(0.818) TCGA-34-5236-01 11 1775093 1775093 C A CTSD Silent p.A337A 0.07 TCGA-34-5236-01 11 2356931 2356931 G A CD81-AS1 Intron 0.13 TCGA-34-5236-01 11 40136672 40136672 C T LRRC4C Missense_Mutation p.G391R 0.12 deleterious(0) probably_damaging(1) TCGA-34-5236-01 11 55703454 55703454 G T OR5I1 Silent p.G141G 0.11 TCGA-34-5236-01 11 56143912 56143912 C A OR8U1 Missense_Mutation p.D271E 0.11 deleterious(0.02) possibly_damaging(0.757) TCGA-34-5236-01 11 56258068 56258068 C T OR5M8 Missense_Mutation p.R260K 0.07 deleterious(0.03) benign(0.344) TCGA-34-5236-01 11 56949949 56949949 G A LRRC55 Silent p.R194R 0.09 TCGA-34-5236-01 11 57076303 57076303 T A TNKS1BP1 Silent p.A1294A 0.11 TCGA-34-5236-01 11 6129835 6129835 T A OR56B4 Missense_Mutation p.I276N 0.14 deleterious(0) probably_damaging(0.964) TCGA-34-5236-01 11 7064865 7064865 G A NLRP14 Silent p.L536L 0.12 TCGA-34-5236-01 11 72945945 72945945 C T P2RY2 Silent p.I247I 0.08 TCGA-34-5236-01 11 92577249 92577249 G C FAT3 Missense_Mutation p.K3572N 0.06 possibly_damaging(0.468) TCGA-34-5236-01 11 92901139 92901139 G A SLC36A4 Missense_Mutation p.L247F 0.08 deleterious(0) probably_damaging(0.997) TCGA-34-5236-01 11 93483519 93483519 G A C11orf54 Silent p.Q21Q 0.04 TCGA-34-5236-01 11 93486866 93486866 G T C11orf54 Missense_Mutation p.R58I 0.06 deleterious(0.01) probably_damaging(0.964) TCGA-34-5236-01 11 93487108 93487108 G A C11orf54 Missense_Mutation p.D79N 0.06 tolerated(0.44) benign(0.016) TCGA-34-5236-01 11 93862630 93862630 C G PANX1 Missense_Mutation p.S51W 0.08 deleterious(0) probably_damaging(1) TCGA-34-5236-01 11 93862640 93862640 C A PANX1 Missense_Mutation p.F54L 0.10 deleterious(0.02) probably_damaging(0.976) TCGA-34-5236-01 11 9459342 9459343 AA - IPO7 Frame_Shift_Del p.E772Gfs*2 0.16 TCGA-34-5236-01 12 100729439 100729439 G A SCYL2 Silent p.E633E 0.06 TCGA-34-5236-01 12 108105954 108105954 G C PWP1 Missense_Mutation p.G488A 0.11 tolerated_low_confidence(0.36) benign(0.01) TCGA-34-5236-01 12 111311754 111311754 C T CCDC63 Missense_Mutation p.R160C 0.11 tolerated(0.08) benign(0.187) TCGA-34-5236-01 12 113543637 113543637 C A RASAL1 Missense_Mutation p.G572V 0.11 deleterious(0) probably_damaging(0.985) TCGA-34-5236-01 12 15262093 15262093 G T RERG Missense_Mutation p.T184K 0.22 deleterious(0.03) benign(0.353) TCGA-34-5236-01 12 26383680 26383680 G T SSPN Missense_Mutation p.V135F 0.08 deleterious(0.01) possibly_damaging(0.452) TCGA-34-5236-01 12 401958 401958 T G KDM5A Silent p.A1611A 0.30 TCGA-34-5236-01 12 46320209 46320209 T C SCAF11 Missense_Mutation p.Q1092R 0.15 tolerated(0.06) benign(0.027) TCGA-34-5236-01 12 54910050 54910050 G T NCKAP1L Missense_Mutation p.K323N 0.08 deleterious(0) probably_damaging(0.978) TCGA-34-5236-01 12 55886651 55886651 C A OR6C68 Missense_Mutation p.L164I 0.11 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-34-5236-01 12 56845175 56845175 G T MIP Silent p.L227L 0.18 TCGA-34-5236-01 12 7805307 7805307 T C APOBEC1 Missense_Mutation p.N57D 0.12 deleterious(0.03) probably_damaging(0.969) TCGA-34-5236-01 12 8926044 8926044 C G RIMKLB Silent p.V275V 0.23 TCGA-34-5236-01 12 8998722 8998722 C T A2ML1 Silent p.A529A 0.06 TCGA-34-5236-01 12 9349191 9349191 C A PZP Missense_Mutation p.A320S 0.06 deleterious(0) possibly_damaging(0.86) TCGA-34-5236-01 12 99837495 99837495 G C ANKS1B Missense_Mutation p.P511A 0.11 deleterious(0.03) probably_damaging(0.987) TCGA-34-5236-01 13 108518491 108518491 G T FAM155A Silent p.R152R 0.26 TCGA-34-5236-01 13 114290937 114290937 G C TFDP1 Missense_Mutation p.E310Q 0.24 deleterious(0) probably_damaging(0.985) TCGA-34-5236-01 13 23908856 23908856 C A SACS Missense_Mutation p.E3053D 0.22 probably_damaging(0.978) TCGA-34-5236-01 13 25670679 25670679 C G PABPC3 Missense_Mutation p.L115V 0.22 deleterious(0.01) possibly_damaging(0.879) TCGA-34-5236-01 13 29599636 29599636 G A MTUS2 Silent p.L277L 0.30 TCGA-34-5236-01 14 106610496 106610496 C G IGHV3-15 Missense_Mutation p.Q58H 0.05 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-34-5236-01 14 37132593 37132593 A G PAX9 Missense_Mutation p.I166V 0.18 tolerated(0.61) possibly_damaging(0.891) TCGA-34-5236-01 14 62547935 62547935 G A SYT16 Silent p.L459L 0.30 TCGA-34-5236-01 14 70991290 70991290 G A ADAM20 Missense_Mutation p.S112F 0.26 deleterious(0) probably_damaging(0.976) TCGA-34-5236-01 14 75321889 75321889 C T PROX2 Silent p.S348S 0.12 TCGA-34-5236-01 14 78021768 78021768 C A SPTLC2 Missense_Mutation p.A351S 0.20 tolerated(0.1) possibly_damaging(0.611) TCGA-34-5236-01 15 49048099 49048099 C A CEP152 Splice_Site p.X1115_splice 0.11 TCGA-34-5236-01 15 49048100 49048100 C A CEP152 Missense_Mutation p.K1115N 0.11 deleterious(0.01) probably_damaging(0.933) TCGA-34-5236-01 15 49254907 49254907 C T SHC4 Silent p.L102L 0.12 TCGA-34-5236-01 15 49584700 49584700 C G GALK2 Silent p.L311L 0.13 TCGA-34-5236-01 15 51217296 51217296 A G AP4E1 Missense_Mutation p.D141G 0.06 deleterious(0) probably_damaging(1) TCGA-34-5236-01 15 52659307 52659307 C A MYO5A Silent p.L1027L 0.06 TCGA-34-5236-01 15 73536809 73536809 G T NEO1 Missense_Mutation p.A526S 0.16 tolerated(0.15) benign(0.003) TCGA-34-5236-01 15 88522480 88522480 C A NTRK3 Intron 0.23 TCGA-34-5236-01 15 88522481 88522481 C A NTRK3 Intron 0.23 TCGA-34-5236-01 15 91448578 91448578 A T MAN2A2 Missense_Mutation p.E77V 0.10 tolerated(0.07) probably_damaging(0.991) TCGA-34-5236-01 16 20480859 20480859 C A ACSM2A Silent p.I138I 0.21 TCGA-34-5236-01 16 20480860 20480860 C A ACSM2A Missense_Mutation p.Q139K 0.21 deleterious(0) possibly_damaging(0.664) TCGA-34-5236-01 16 20673196 20673196 C G ACSM1 Splice_Site p.X305_splice 0.24 TCGA-34-5236-01 16 2256502 2256502 C T MLST8 Silent p.Y62Y 0.04 TCGA-34-5236-01 16 23722242 23722242 A T ERN2 Missense_Mutation p.L112Q 0.29 tolerated(0.13) probably_damaging(0.992) TCGA-34-5236-01 16 55909197 55909197 G T CES5A Intron 0.23 TCGA-34-5236-01 16 57265166 57265166 T G RSPRY1 Silent p.S488S 0.28 TCGA-34-5236-01 16 67037456 67037456 G T CES4A Missense_Mutation p.E313D 0.28 tolerated(0.08) benign(0.038) TCGA-34-5236-01 16 81183470 81183470 G T PKD1L2 RNA 0.17 TCGA-34-5236-01 16 89964992 89964992 G C TCF25 Missense_Mutation p.Q350H 0.24 tolerated(1) benign(0.002) TCGA-34-5236-01 17 10297739 10297739 G T MYH8 Silent p.R1665R 0.22 TCGA-34-5236-01 17 16722234 16722234 T A AC022596.6 RNA 0.12 TCGA-34-5236-01 17 1783860 1783860 A G RPA1 Silent p.R372R 0.34 TCGA-34-5236-01 17 18196039 18196039 C A TOP3A Missense_Mutation p.G401C 0.25 deleterious(0) probably_damaging(0.995) TCGA-34-5236-01 17 7578535 7578535 T C TP53 Missense_Mutation p.K132R 0.37 deleterious(0.01) probably_damaging(1) TCGA-34-5236-01 17 79668078 79668078 C T HGS Missense_Mutation p.L714F 0.06 deleterious(0.01) probably_damaging(0.979) TCGA-34-5236-01 18 23612395 23612395 G A SS18 Missense_Mutation p.P400S 0.08 tolerated_low_confidence(0.07) unknown(0) TCGA-34-5236-01 18 23612396 23612396 C A SS18 Missense_Mutation p.Q399H 0.08 deleterious_low_confidence(0.03) unknown(0) TCGA-34-5236-01 18 32418101 32418101 G C DTNA Intron 0.50 TCGA-34-5236-01 18 3879542 3879542 G A DLGAP1 Missense_Mutation p.A176V 0.20 tolerated(0.37) benign(0) TCGA-34-5236-01 18 39607454 39607454 C T PIK3C3 Missense_Mutation p.P511L 0.09 tolerated(0.21) benign(0.005) TCGA-34-5236-01 18 56939713 56939713 C A RAX Silent p.T141T 0.23 TCGA-34-5236-01 18 65178337 65178337 T C DSEL Missense_Mutation p.Y1180C 0.17 deleterious(0) probably_damaging(0.927) TCGA-34-5236-01 19 11537596 11537596 C T CCDC151 Silent p.R207R 0.15 TCGA-34-5236-01 19 12383611 12383611 A T ZNF44 Missense_Mutation p.S535T 0.06 tolerated(0.38) possibly_damaging(0.566) TCGA-34-5236-01 19 14003963 14003963 G C C19orf57 Missense_Mutation p.P94A 0.60 tolerated(1) possibly_damaging(0.908) TCGA-34-5236-01 19 15271654 15271654 G C NOTCH3 Missense_Mutation p.S2262C 0.14 tolerated(0.13) possibly_damaging(0.872) TCGA-34-5236-01 19 16860592 16860592 C G NWD1 Nonsense_Mutation p.S380* 0.08 TCGA-34-5236-01 19 21299983 21299983 T G ZNF714 Silent p.S171S 0.09 TCGA-34-5236-01 19 32844259 32844259 G C ZNF507 Missense_Mutation p.V175L 0.15 tolerated(0.19) benign(0.001) TCGA-34-5236-01 19 40541220 40541220 G C ZNF780B Missense_Mutation p.L516V 0.10 deleterious(0) benign(0.265) TCGA-34-5236-01 19 43234133 43234133 C A PSG3 Missense_Mutation p.C262F 0.12 deleterious(0.02) possibly_damaging(0.904) TCGA-34-5236-01 19 46338488 46338488 T G SYMPK Splice_Site p.X415_splice 0.07 TCGA-34-5236-01 19 4932887 4932887 G A MIR4747 3'Flank 0.19 TCGA-34-5236-01 19 49939821 49939821 G A SLC17A7 Silent p.G100G 0.06 TCGA-34-5236-01 19 51215370 51215370 G A SHANK1 Missense_Mutation p.A265V 0.08 possibly_damaging(0.539) TCGA-34-5236-01 19 52023493 52023493 A T SIGLEC6 Missense_Mutation p.F402Y 0.04 tolerated(1) benign(0.01) TCGA-34-5236-01 19 54313840 54313840 C T NLRP12 Missense_Mutation p.R358K 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-34-5236-01 19 56459197 56459197 G T NLRP8 5'Flank 0.22 TCGA-34-5236-01 19 57802790 57802790 A T ZNF460 Missense_Mutation p.N294I 0.17 tolerated(0.08) possibly_damaging(0.553) TCGA-34-5236-01 19 57909941 57909941 A G ZNF548 Missense_Mutation p.I108V 0.08 tolerated(0.06) benign(0.002) TCGA-34-5236-01 19 9056708 9056708 G A MUC16 Silent p.F10246F 0.22 TCGA-34-5236-01 19 9060853 9060853 G T MUC16 Missense_Mutation p.P8865T 0.06 unknown(0) TCGA-34-5236-01 1 103385884 103385884 C G COL11A1 Missense_Mutation p.G1249R 0.09 unknown(0) TCGA-34-5236-01 1 103444627 103444627 G C COL11A1 Missense_Mutation p.R882G 0.15 unknown(0) TCGA-34-5236-01 1 109538232 109538232 A G WDR47 Missense_Mutation p.F562S 0.09 tolerated(0.42) benign(0) TCGA-34-5236-01 1 118514563 118514563 G C SPAG17 Silent p.V2083V 0.15 TCGA-34-5236-01 1 149901065 149901065 T C MTMR11 Missense_Mutation p.I696V 0.10 tolerated_low_confidence(0.43) benign(0.002) TCGA-34-5236-01 1 156532988 156532988 C G IQGAP3 Missense_Mutation p.A246P 0.14 tolerated(0.4) benign(0.011) TCGA-34-5236-01 1 157805906 157805906 C G CD5L Missense_Mutation p.R32P 0.20 deleterious(0.02) probably_damaging(0.982) TCGA-34-5236-01 1 158651438 158651438 C A SPTA1 Missense_Mutation p.R137L 0.21 tolerated(0.17) benign(0.152) TCGA-34-5236-01 1 186277571 186277571 C A PRG4 Missense_Mutation p.T907N 0.11 unknown(0) TCGA-34-5236-01 1 186303582 186303582 A G TPR Missense_Mutation p.M1686T 0.06 benign(0.001) TCGA-34-5236-01 1 197074167 197074167 C A ASPM Missense_Mutation p.R1405L 0.20 deleterious(0.01) possibly_damaging(0.5) TCGA-34-5236-01 1 204226822 204226822 C A PLEKHA6 Missense_Mutation p.A395S 0.29 tolerated(1) benign(0) TCGA-34-5236-01 1 216262426 216262426 C A USH2A Missense_Mutation p.G1605V 0.04 probably_damaging(0.987) TCGA-34-5236-01 1 228469780 228469781 - T OBSCN Frame_Shift_Ins p.R3211Lfs*22 0.33 TCGA-34-5236-01 1 247320589 247320589 T C ZNF124 Intron 0.24 TCGA-34-5236-01 1 247769664 247769664 C A OR2G3 Nonsense_Mutation p.Y259* 0.23 TCGA-34-5236-01 1 248367022 248367022 A G OR2M3 Missense_Mutation p.Y218C 0.20 deleterious(0) possibly_damaging(0.798) TCGA-34-5236-01 1 248457927 248457927 C A OR2T12 Missense_Mutation p.R318S 0.17 tolerated_low_confidence(0.58) benign(0) TCGA-34-5236-01 1 248525564 248525564 G A OR2T4 Missense_Mutation p.E228K 0.12 tolerated(0.09) benign(0.232) TCGA-34-5236-01 1 24976564 24976564 C G SRRM1 Missense_Mutation p.R170G 0.14 unknown(0) TCGA-34-5236-01 1 35657072 35657072 C A SFPQ Missense_Mutation p.R296L 0.06 deleterious(0.01) benign(0.387) TCGA-34-5236-01 1 35847261 35847261 G T ZMYM4 Missense_Mutation p.G491C 0.29 deleterious(0.01) probably_damaging(0.984) TCGA-34-5236-01 1 45226350 45226350 T G KIF2C Missense_Mutation p.I553M 0.14 deleterious(0) probably_damaging(0.998) TCGA-34-5236-01 1 52849168 52849168 C A ORC1 Missense_Mutation p.R646L 0.07 deleterious(0) possibly_damaging(0.565) TCGA-34-5236-01 1 86307765 86307765 G T COL24A1 Missense_Mutation p.P1186T 0.09 deleterious(0) probably_damaging(0.997) TCGA-34-5236-01 1 92442847 92442847 T C BRDT Missense_Mutation p.F289S 0.16 tolerated(0.22) benign(0.039) TCGA-34-5236-01 20 24988313 24988313 G C ACSS1 3'UTR 0.23 TCGA-34-5236-01 20 2968733 2968733 G T PTPRA Missense_Mutation p.G195C 0.08 deleterious(0.01) probably_damaging(1) TCGA-34-5236-01 20 35696516 35696516 T C RBL1 Missense_Mutation p.I122V 0.12 tolerated(0.62) benign(0.009) TCGA-34-5236-01 20 44691090 44691090 G C NCOA5 Missense_Mutation p.S530C 0.34 deleterious(0.02) probably_damaging(0.965) TCGA-34-5236-01 20 55948590 55948590 A T RAE1 Silent p.G234G 0.09 TCGA-34-5236-01 20 5923271 5923275 AAGAT - TRMT6 Frame_Shift_Del p.L275Ffs*10 0.09 TCGA-34-5236-01 20 8713910 8713910 G A PLCB1 Silent p.G638G 0.11 TCGA-34-5236-01 21 15599537 15599537 G C RBM11 Missense_Mutation p.D257H 0.03 deleterious(0) probably_damaging(0.997) TCGA-34-5236-01 21 22746206 22746206 C A NCAM2 Silent p.V356V 0.21 TCGA-34-5236-01 21 41385159 41385159 C T DSCAM Silent p.P1947P 0.26 TCGA-34-5236-01 22 16287910 16287910 C A POTEH 5'UTR 0.22 TCGA-34-5236-01 22 28293859 28293859 C G PITPNB Missense_Mutation p.R73S 0.19 deleterious(0.04) benign(0.431) TCGA-34-5236-01 22 32072807 32072807 G A PRR14L 3'Flank 0.24 TCGA-34-5236-01 22 36715597 36715597 G A MYH9 Missense_Mutation p.P366S 0.06 probably_damaging(0.996) TCGA-34-5236-01 22 36723505 36723505 C T MYH9 Splice_Site p.X173_splice 0.20 TCGA-34-5236-01 22 37603337 37603337 A T SSTR3 Missense_Mutation p.V169E 0.16 tolerated(0.07) possibly_damaging(0.451) TCGA-34-5236-01 22 43533133 43533133 G C MCAT Missense_Mutation p.S228C 0.08 deleterious(0) probably_damaging(0.973) TCGA-34-5236-01 2 10580917 10580917 G T ODC1 Missense_Mutation p.S440Y 0.05 tolerated(0.09) benign(0.008) TCGA-34-5236-01 2 149519363 149519363 G C EPC2 Missense_Mutation p.D227H 0.25 deleterious(0) probably_damaging(0.997) TCGA-34-5236-01 2 157425449 157425449 G C GPD2 Missense_Mutation p.E426D 0.05 tolerated(1) benign(0.001) TCGA-34-5236-01 2 158157214 158157214 G C GALNT5 Missense_Mutation p.E714D 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-34-5236-01 2 158406771 158406771 G A ACVR1C Silent p.S226S 0.13 TCGA-34-5236-01 2 166032861 166032861 C T SCN3A Missense_Mutation p.R15H 0.28 tolerated(0.12) probably_damaging(0.995) TCGA-34-5236-01 2 178098944 178098944 C G NFE2L2 Missense_Mutation p.R34P 0.25 deleterious(0) probably_damaging(1) TCGA-34-5236-01 2 179442158 179442158 G T TTN Silent p.A22968A 0.25 TCGA-34-5236-01 2 179477625 179477625 G T TTN Missense_Mutation p.T16608N 0.32 TCGA-34-5236-01 2 179595911 179595911 C G TTN Missense_Mutation p.E5827D 0.23 TCGA-34-5236-01 2 185801788 185801788 C A ZNF804A Silent p.I555I 0.30 TCGA-34-5236-01 2 187532403 187532403 C G ITGAV Missense_Mutation p.S778W 0.09 deleterious(0) probably_damaging(1) TCGA-34-5236-01 2 190719454 190719454 G C PMS1 Missense_Mutation p.G486R 0.32 tolerated(0.44) benign(0.048) TCGA-34-5236-01 2 207557925 207557925 C A DYTN Missense_Mutation p.K318N 0.32 deleterious(0.05) benign(0.024) TCGA-34-5236-01 2 209215512 209215512 G T PIKFYVE Missense_Mutation p.A1818S 0.21 tolerated(0.19) benign(0.373) TCGA-34-5236-01 2 211469926 211469926 C T CPS1 Missense_Mutation p.T652I 0.10 deleterious(0) possibly_damaging(0.905) TCGA-34-5236-01 2 21235030 21235030 T G APOB Missense_Mutation p.L1570F 0.05 possibly_damaging(0.708) TCGA-34-5236-01 2 215275080 215275080 C A SPAG16 3'UTR 0.23 TCGA-34-5236-01 2 24951338 24951338 T C NCOA1 Missense_Mutation p.L960P 0.19 deleterious(0) probably_damaging(0.949) TCGA-34-5236-01 2 33505114 33505114 G T LTBP1 Nonsense_Mutation p.E1001* 0.13 TCGA-34-5236-01 2 37096816 37096816 T G STRN Missense_Mutation p.R460S 0.14 deleterious(0.01) probably_damaging(1) TCGA-34-5236-01 2 50780062 50780062 C G NRXN1 Missense_Mutation p.E514D 0.05 deleterious(0.03) probably_damaging(0.988) TCGA-34-5236-01 2 50850672 50850672 C A NRXN1 Missense_Mutation p.S338I 0.19 deleterious(0.01) possibly_damaging(0.682) TCGA-34-5236-01 2 7137104 7137104 C T RNF144A Missense_Mutation p.P16L 0.19 deleterious(0.03) possibly_damaging(0.791) TCGA-34-5236-01 2 71590297 71590297 A G ZNF638 Missense_Mutation p.N465S 0.15 deleterious(0) probably_damaging(0.996) TCGA-34-5236-01 2 73053053 73053053 C A EXOC6B 5'UTR 0.21 TCGA-34-5236-01 2 73498004 73498004 G A FBXO41 Intron 0.12 TCGA-34-5236-01 2 77746093 77746093 A G LRRTM4 Missense_Mutation p.I301T 0.16 tolerated(0.44) benign(0.254) TCGA-34-5236-01 2 79386511 79386511 C A REG3A Silent p.L7L 0.11 TCGA-34-5236-01 2 89339924 89339924 C A IGKV1-12 Missense_Mutation p.G50C 0.23 deleterious(0.01) possibly_damaging(0.791) TCGA-34-5236-01 2 89459297 89459297 T C IGKV6-21 Missense_Mutation p.I94V 0.16 deleterious(0.02) probably_damaging(0.912) TCGA-34-5236-01 2 89513000 89513000 T A IGKV1-27 Missense_Mutation p.S87C 0.17 deleterious(0) probably_damaging(0.968) TCGA-34-5236-01 3 101477150 101477150 C G CEP97 Missense_Mutation p.A567G 0.05 deleterious(0.01) probably_damaging(0.958) TCGA-34-5236-01 3 107435501 107435501 T G BBX Silent p.T70T 0.22 TCGA-34-5236-01 3 108072395 108072395 C T HHLA2 Silent p.H62H 0.16 TCGA-34-5236-01 3 11301218 11301218 G T HRH1 Missense_Mutation p.W165C 0.15 deleterious(0) probably_damaging(1) TCGA-34-5236-01 3 121208002 121208002 A G POLQ Missense_Mutation p.I1259T 0.03 tolerated_low_confidence(0.57) benign(0.004) TCGA-34-5236-01 3 132432080 132432080 G A NPHP3 Silent p.F336F 0.25 TCGA-34-5236-01 3 140285003 140285003 G T CLSTN2 Nonsense_Mutation p.E926* 0.11 TCGA-34-5236-01 3 164758839 164758839 T G SI Missense_Mutation p.K683T 0.11 tolerated(0.26) benign(0.034) TCGA-34-5236-01 3 164906740 164906740 G T SLITRK3 Missense_Mutation p.P627T 0.16 tolerated(0.16) benign(0.196) TCGA-34-5236-01 3 167016134 167016134 C G ZBBX Missense_Mutation p.R613P 0.06 tolerated(0.1) benign(0.002) TCGA-34-5236-01 3 175165022 175165022 A T NAALADL2 Missense_Mutation p.S366C 0.07 deleterious(0) benign(0.015) TCGA-34-5236-01 3 194117218 194117218 G C GP5 3'UTR 0.08 TCGA-34-5236-01 3 194365336 194365336 A G LSG1 Missense_Mutation p.I588T 0.07 tolerated(0.26) benign(0.006) TCGA-34-5236-01 3 196613059 196613059 A T SENP5 Missense_Mutation p.K336M 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-34-5236-01 3 43759279 43759279 G C ABHD5 Missense_Mutation p.R297P 0.22 deleterious(0) probably_damaging(0.983) TCGA-34-5236-01 3 64644325 64644325 G T ADAMTS9 Missense_Mutation p.D274E 0.19 tolerated(1) benign(0.001) TCGA-34-5236-01 3 88040159 88040159 A G HTR1F Missense_Mutation p.E87G 0.04 tolerated(0.53) benign(0.159) TCGA-34-5236-01 3 95374199 95374199 C T MTHFD2P1 RNA 0.25 TCGA-34-5236-01 3 96533584 96533584 G T EPHA6 Silent p.G39G 0.48 TCGA-34-5236-01 3 98251900 98251900 C G GPR15 Silent p.L341L 0.13 TCGA-34-5236-01 4 111781746 111781746 G T MIR297 RNA 0.11 TCGA-34-5236-01 4 52863965 52863965 T C LRRC66 Missense_Mutation p.I269V 0.31 tolerated(0.15) benign(0.325) TCGA-34-5236-01 4 88973215 88973215 G T PKD2 Missense_Mutation p.D541Y 0.14 deleterious(0.02) probably_damaging(0.927) TCGA-34-5236-01 5 120021651 120021651 G A PRR16 Silent p.V31V 0.16 TCGA-34-5236-01 5 132406080 132406080 G A HSPA4 Silent p.E107E 0.25 TCGA-34-5236-01 5 145442090 145442090 G - SH3RF2 Frame_Shift_Del p.A673Rfs*13 0.24 TCGA-34-5236-01 5 170598227 170598227 A T RANBP17 Missense_Mutation p.Y601F 0.25 tolerated(0.58) benign(0.001) TCGA-34-5236-01 5 21752268 21752268 C G CDH12 Missense_Mutation p.D655H 0.11 deleterious(0) probably_damaging(0.999) TCGA-34-5236-01 5 33616178 33616178 C A ADAMTS12 Splice_Site p.X715_splice 0.11 TCGA-34-5236-01 5 38963107 38963107 G A RICTOR Silent p.F479F 0.07 TCGA-34-5236-01 5 40936549 40936549 C T C7 Silent p.I130I 0.25 TCGA-34-5236-01 5 41049530 41049530 C A MROH2B Missense_Mutation p.W451C 0.10 deleterious(0) probably_damaging(0.996) TCGA-34-5236-01 5 41049531 41049531 C T MROH2B Nonsense_Mutation p.W451* 0.10 TCGA-34-5236-01 5 5463179 5463179 G T KIAA0947 Silent p.S1244S 0.08 TCGA-34-5236-01 5 65350291 65350291 G - ERBB2IP Frame_Shift_Del p.G1049Afs*21 0.16 TCGA-34-5236-01 5 75427478 75427478 T C SV2C 5'UTR 0.37 TCGA-34-5236-01 6 110059612 110059612 G A FIG4 Missense_Mutation p.R244H 0.14 tolerated(0.61) benign(0.009) TCGA-34-5236-01 6 117631403 117631403 T C ROS1 Missense_Mutation p.Y2092C 0.15 deleterious(0.01) probably_damaging(1) TCGA-34-5236-01 6 123539799 123539799 C T TRDN Missense_Mutation p.G713R 0.12 deleterious_low_confidence(0) possibly_damaging(0.809) TCGA-34-5236-01 6 130381241 130381241 G T L3MBTL3 Missense_Mutation p.D274Y 0.12 deleterious(0) probably_damaging(0.978) TCGA-34-5236-01 6 151939235 151939235 A G CCDC170 Missense_Mutation p.T701A 0.10 tolerated(0.73) benign(0.001) TCGA-34-5236-01 6 152541993 152541993 C A SYNE1 Missense_Mutation p.W7282L 0.10 possibly_damaging(0.791) TCGA-34-5236-01 6 165703466 165703466 T - C6orf118 Frame_Shift_Del p.D404Vfs*30 0.16 TCGA-34-5236-01 6 165715151 165715151 A G C6orf118 Silent p.R220R 0.05 TCGA-34-5236-01 6 27101012 27101012 G A HIST1H2AG Silent p.A54A 0.15 TCGA-34-5236-01 6 28294228 28294228 T A ZSCAN31 Silent p.R312R 0.16 TCGA-34-5236-01 6 31721345 31721345 T G MSH5 Missense_Mutation p.L318R 0.13 tolerated(0.74) benign(0.009) TCGA-34-5236-01 6 32029424 32029424 C A TNXB Silent p.L2414L 0.20 TCGA-34-5236-01 6 33405912 33405912 C T SYNGAP1 Silent p.S410S 0.11 TCGA-34-5236-01 6 38843455 38843455 G T DNAH8 Missense_Mutation p.G2353V 0.06 benign(0.003) TCGA-34-5236-01 6 38998242 38998242 G T DNAH8 3'UTR 0.23 TCGA-34-5236-01 6 39835505 39835505 G T DAAM2 Missense_Mutation p.K216N 0.21 deleterious(0) probably_damaging(0.997) TCGA-34-5236-01 6 71185225 71185225 A G FAM135A Silent p.K90K 0.09 TCGA-34-5236-01 6 7575021 7575021 G A DSP Missense_Mutation p.G810E 0.11 benign(0.215) TCGA-34-5236-01 6 90460071 90460071 A G MDN1 Splice_Site p.X1136_splice 0.10 TCGA-34-5236-01 7 100246221 100246221 C T ACTL6B Silent p.E209E 0.13 TCGA-34-5236-01 7 113518037 113518037 G T PPP1R3A Nonsense_Mutation p.S1037* 0.30 TCGA-34-5236-01 7 128640534 128640534 G A TNPO3 Silent p.D320D 0.40 TCGA-34-5236-01 7 132570425 132570425 C A CHCHD3 Missense_Mutation p.E150D 0.41 tolerated(0.07) benign(0.107) TCGA-34-5236-01 7 133812132 133812132 C G LRGUK Silent p.S4S 0.04 TCGA-34-5236-01 7 149171603 149171603 T C ZNF746 Missense_Mutation p.T604A 0.53 tolerated_low_confidence(0.61) benign(0) TCGA-34-5236-01 7 30329469 30329469 G T ZNRF2 Intron 0.06 TCGA-34-5236-01 7 66273905 66273905 C T KCTD7 Silent p.D370D 0.11 TCGA-34-5236-01 7 71175784 71175784 T G WBSCR17 Silent p.G513G 0.08 TCGA-34-5236-01 7 88956697 88956697 G A ZNF804B Missense_Mutation p.V97I 0.20 deleterious(0) probably_damaging(0.994) TCGA-34-5236-01 7 88966152 88966152 C A ZNF804B Missense_Mutation p.L1286M 0.05 deleterious(0.02) probably_damaging(0.94) TCGA-34-5236-01 7 97488644 97488644 T C ASNS Missense_Mutation p.Y185C 0.46 deleterious(0.04) benign(0.015) TCGA-34-5236-01 8 113317078 113317078 G T CSMD3 Missense_Mutation p.S2713Y 0.10 deleterious(0.03) probably_damaging(0.996) TCGA-34-5236-01 8 16850715 16850715 C - FGF20 Frame_Shift_Del p.A168Hfs*41 0.13 TCGA-34-5236-01 8 2092919 2092919 G C MYOM2 3'UTR 0.17 TCGA-34-5236-01 8 42591652 42591652 C T CHRNB3 Missense_Mutation p.A423V 0.15 deleterious(0) probably_damaging(1) TCGA-34-5236-01 8 43147635 43147635 C T POTEA RNA 0.19 TCGA-34-5236-01 8 55542671 55542671 C T RP1 Nonsense_Mutation p.Q2077* 0.07 TCGA-34-5236-01 8 77618877 77618877 G T ZFHX4 Missense_Mutation p.D852Y 0.57 probably_damaging(0.934) TCGA-34-5236-01 8 95507087 95507087 C G KIAA1429 Splice_Site p.X1547_splice 0.15 TCGA-34-5236-01 9 107599762 107599762 C A ABCA1 Missense_Mutation p.G381W 0.27 deleterious(0) probably_damaging(0.992) TCGA-34-5236-01 9 125239760 125239760 C G OR1J1 Missense_Mutation p.W149S 0.15 deleterious_low_confidence(0.01) benign(0.077) TCGA-34-5236-01 9 140196057 140196057 C T NRARP Silent p.K108K 0.20 TCGA-34-5236-01 9 16418960 16418960 C T BNC2 3'UTR 0.08 TCGA-34-5236-01 9 16583008 16583008 G A BNC2 Nonsense_Mutation p.Q136* 0.08 TCGA-34-5236-01 9 21333559 21333559 C T KLHL9 Missense_Mutation p.E434K 0.08 tolerated(0.13) benign(0.392) TCGA-34-5236-01 9 32973487 32973487 T G APTX 3'UTR 0.12 TCGA-34-5236-01 9 79842344 79842344 A T VPS13A Missense_Mutation p.L465F 0.10 deleterious(0.01) benign(0.187) TCGA-34-5236-01 9 88842793 88842793 T G C9orf153 Missense_Mutation p.R73S 0.06 tolerated(0.14) possibly_damaging(0.765) TCGA-34-5236-01 9 990301 990301 G T DMRT3 Missense_Mutation p.V239F 0.09 tolerated(0.09) probably_damaging(0.954) TCGA-34-5236-01 X 10535112 10535112 T C MID1 Missense_Mutation p.H159R 0.07 deleterious(0) probably_damaging(0.998) TCGA-34-5236-01 X 110654250 110654250 C A DCX 5'UTR 0.24 TCGA-34-5236-01 X 123040952 123040952 A G XIAP Missense_Mutation p.K472R 0.10 deleterious(0.03) possibly_damaging(0.862) TCGA-34-5236-01 X 139038097 139038113 TCTGTCACACGTAATGA - CXorf66 Frame_Shift_Del p.I343Rfs*8 0.30 TCGA-34-5236-01 X 153927772 153927772 G A GAB3 Missense_Mutation p.P381L 0.24 tolerated(0.27) benign(0.013) TCGA-34-5236-01 X 31514965 31514965 G T DMD Missense_Mutation p.S2829R 0.35 benign(0.04) TCGA-34-5236-01 X 50377041 50377041 T C SHROOM4 Missense_Mutation p.R678G 0.29 deleterious(0.01) benign(0.007) TCGA-34-5236-01 X 79281249 79281249 C A TBX22 Silent p.T202T 0.19 TCGA-34-5239-01 10 108469059 108469059 C A SORCS1 Missense_Mutation p.E355D 0.14 tolerated(0.49) benign(0.071) TCGA-34-5239-01 10 11504657 11504657 C T USP6NL Missense_Mutation p.S774N 0.40 tolerated_low_confidence(1) benign(0.001) TCGA-34-5239-01 10 1245994 1245994 C A ADARB2 Silent p.T592T 0.25 TCGA-34-5239-01 10 58119839 58119839 T C ZWINT Missense_Mutation p.I66V 0.38 deleterious(0.01) benign(0.001) TCGA-34-5239-01 10 61007220 61007220 A G FAM13C 3'UTR 0.53 TCGA-34-5239-01 10 7860771 7860771 C T TAF3 Silent p.L33L 0.36 TCGA-34-5239-01 10 96495057 96495057 G C CYP2C18 Missense_Mutation p.M443I 0.44 deleterious(0) possibly_damaging(0.872) TCGA-34-5239-01 11 122669743 122669743 G A UBASH3B Splice_Site p.X484_splice 0.29 TCGA-34-5239-01 11 123624792 123624792 G T OR6X1 Missense_Mutation p.S145R 0.31 deleterious(0.01) benign(0.056) TCGA-34-5239-01 11 124310747 124310747 G C OR8B8 Missense_Mutation p.P79A 0.41 deleterious_low_confidence(0) possibly_damaging(0.564) TCGA-34-5239-01 11 1264226 1264226 C G MUC5B Missense_Mutation p.P2039R 0.35 unknown(0) TCGA-34-5239-01 11 26584686 26584686 A T MUC15 Missense_Mutation p.L301H 0.32 deleterious(0) probably_damaging(0.966) TCGA-34-5239-01 11 27016499 27016499 C T FIBIN Silent p.S142S 0.36 TCGA-34-5239-01 11 47283320 47283320 G T NR1H3 Intron 0.36 TCGA-34-5239-01 11 49221983 49221983 G TT FOLH1 Frame_Shift_Ins p.Q79Kfs*31 0.23 TCGA-34-5239-01 11 55065626 55065626 G T TRIM51HP RNA 0.35 TCGA-34-5239-01 11 55659139 55659139 C A TRIM51 3'UTR 0.37 TCGA-34-5239-01 11 55735108 55735108 G T OR10AG1 Missense_Mutation p.P278T 0.37 deleterious(0) probably_damaging(0.993) TCGA-34-5239-01 11 55761176 55761176 C A OR5F1 Missense_Mutation p.R309M 0.24 tolerated(0.14) benign(0.018) TCGA-34-5239-01 11 56019674 56019674 G T OR5T3 5'Flank 0.20 TCGA-34-5239-01 11 56380387 56380387 C - OR5M1 Frame_Shift_Del p.A198Qfs*4 0.29 TCGA-34-5239-01 11 56511019 56511019 G T OR9G4 Missense_Mutation p.S90Y 0.25 deleterious(0) probably_damaging(0.99) TCGA-34-5239-01 11 5664869 5664869 A T TRIM34 Missense_Mutation p.Q466L 0.25 tolerated(0.07) benign(0.208) TCGA-34-5239-01 11 6291981 6291981 C T CCKBR Silent p.G253G 0.24 TCGA-34-5239-01 11 66082542 66082542 G T CD248 Missense_Mutation p.P653T 0.34 tolerated(0.12) benign(0.039) TCGA-34-5239-01 11 68707096 68707096 C T IGHMBP2 Missense_Mutation p.S960F 0.63 deleterious(0) possibly_damaging(0.463) TCGA-34-5239-01 11 70130106 70130106 A G PPFIA1 Intron 0.04 TCGA-34-5239-01 11 88300727 88300727 G T GRM5 Silent p.I708I 0.43 TCGA-34-5239-01 12 104054499 104054499 G A STAB2 Silent p.R609R 0.22 TCGA-34-5239-01 12 113603449 113603449 C A DDX54 Silent p.A573A 0.34 TCGA-34-5239-01 12 120960138 120960138 C T COQ5 Silent p.K77K 0.13 TCGA-34-5239-01 12 123950881 123950881 G T SNRNP35 3'Flank 0.29 TCGA-34-5239-01 12 133237750 133237750 C A POLE Missense_Mutation p.R955S 0.24 deleterious(0) probably_damaging(0.995) TCGA-34-5239-01 12 133237751 133237751 C A POLE Splice_Site p.X955_splice 0.22 TCGA-34-5239-01 12 21355459 21355459 G T SLCO1B1 Missense_Mutation p.M390I 0.26 tolerated(1) benign(0.015) TCGA-34-5239-01 12 3806114 3806114 C A EFCAB4B Missense_Mutation p.G18W 0.33 deleterious_low_confidence(0.04) probably_damaging(0.992) TCGA-34-5239-01 12 40749984 40749984 G A LRRK2 Missense_Mutation p.V2280I 0.24 tolerated(0.72) benign(0.015) TCGA-34-5239-01 12 44124214 44124214 C T PUS7L Missense_Mutation p.V691I 0.36 tolerated(0.12) benign(0.127) TCGA-34-5239-01 12 54901665 54901665 T G NCKAP1L Missense_Mutation p.I112S 0.31 deleterious(0) probably_damaging(0.942) TCGA-34-5239-01 12 55420899 55420899 C A NEUROD4 Missense_Mutation p.P226T 0.30 tolerated(0.16) benign(0.16) TCGA-34-5239-01 12 55759054 55759054 C G OR6C75 Missense_Mutation p.Q54E 0.25 deleterious_low_confidence(0) benign(0.033) TCGA-34-5239-01 12 6573864 6573864 G A VAMP1 Intron 0.38 TCGA-34-5239-01 13 29855875 29855875 G A MTUS2 Silent p.L903L 0.63 TCGA-34-5239-01 13 33704302 33704302 G A STARD13 Missense_Mutation p.S171L 0.12 tolerated(0.07) benign(0.15) TCGA-34-5239-01 13 35923291 35923291 G T NBEA Nonsense_Mutation p.E1984* 0.57 TCGA-34-5239-01 14 20216282 20216282 G T OR4Q3 Missense_Mutation p.Q232H 0.26 deleterious(0.02) benign(0.007) TCGA-34-5239-01 14 20296286 20296286 G T OR4N2 Missense_Mutation p.G227W 0.25 deleterious(0) possibly_damaging(0.838) TCGA-34-5239-01 14 69346758 69346758 T C ACTN1 Missense_Mutation p.Q734R 0.18 deleterious(0.01) benign(0.13) TCGA-34-5239-01 14 70990703 70990703 C G ADAM20 Missense_Mutation p.D308H 0.33 deleterious(0) possibly_damaging(0.693) TCGA-34-5239-01 14 75269278 75269278 C G YLPM1 Missense_Mutation p.Q1474E 0.06 probably_damaging(0.909) TCGA-34-5239-01 14 97312478 97312478 A T VRK1 Missense_Mutation p.Q88L 0.38 tolerated(0.12) benign(0.006) TCGA-34-5239-01 15 21051260 21051260 G A POTEB2 Silent p.A400A 0.12 TCGA-34-5239-01 15 21051261 21051261 G T POTEB2 Missense_Mutation p.A400D 0.14 tolerated(0.29) possibly_damaging(0.82) TCGA-34-5239-01 15 23445470 23445470 C A AC100757.1 3'Flank 0.21 TCGA-34-5239-01 15 25959388 25959388 C A ATP10A Missense_Mutation p.V593L 0.34 deleterious(0.03) benign(0.168) TCGA-34-5239-01 15 43525446 43525446 G C TGM5 Missense_Mutation p.S702R 0.29 deleterious(0) probably_damaging(0.999) TCGA-34-5239-01 15 48056400 48056400 G C SEMA6D Missense_Mutation p.S332T 0.10 tolerated(0.39) benign(0.019) TCGA-34-5239-01 15 52420404 52420404 C T GNB5 Missense_Mutation p.D301N 0.08 deleterious(0) probably_damaging(0.982) TCGA-34-5239-01 15 55932011 55932011 A T PRTG Missense_Mutation p.M718K 0.45 tolerated(0.6) benign(0.071) TCGA-34-5239-01 15 56680680 56680680 C G TEX9 Missense_Mutation p.P92A 0.10 tolerated(0.13) benign(0.001) TCGA-34-5239-01 15 69238793 69238793 G T SPESP1 Missense_Mutation p.R307I 0.24 deleterious(0) probably_damaging(0.999) TCGA-34-5239-01 15 85438313 85438313 C T SLC28A1 Silent p.L140L 0.20 TCGA-34-5239-01 15 85438320 85438320 C T SLC28A1 Nonsense_Mutation p.Q143* 0.19 TCGA-34-5239-01 15 93609479 93609479 T C RGMA Intron 0.17 TCGA-34-5239-01 16 1271704 1271704 A C TPSG1 3'UTR 0.29 TCGA-34-5239-01 16 15815503 15815503 G A NDE1 Intron 0.23 TCGA-34-5239-01 16 1748833 1748833 G T HN1L Missense_Mutation p.G136V 0.21 tolerated(0.29) benign(0.168) TCGA-34-5239-01 16 1997365 1997365 A G RPL3L Missense_Mutation p.F173S 0.26 deleterious(0.01) benign(0.065) TCGA-34-5239-01 16 20334224 20334224 C A GP2 Missense_Mutation p.G208C 0.26 deleterious(0.05) possibly_damaging(0.67) TCGA-34-5239-01 16 20480940 20480940 A G ACSM2A Silent p.Q165Q 0.30 TCGA-34-5239-01 16 22163889 22163889 C - VWA3A Frame_Shift_Del p.P1114Lfs*14 0.22 TCGA-34-5239-01 16 23713476 23713476 C A ERN2 Missense_Mutation p.L448F 0.25 tolerated(0.7) benign(0.006) TCGA-34-5239-01 16 24921722 24921722 C T SLC5A11 Silent p.N582N 0.20 TCGA-34-5239-01 16 46771994 46771994 T A MYLK3 Silent p.S210S 0.32 TCGA-34-5239-01 16 48576971 48576971 C A N4BP1 Missense_Mutation p.M845I 0.18 tolerated(0.89) benign(0.001) TCGA-34-5239-01 16 57719655 57719655 G A GPR97 Missense_Mutation p.V453M 0.20 deleterious(0) probably_damaging(0.987) TCGA-34-5239-01 16 57918018 57918018 G T CNGB1 3'UTR 0.37 TCGA-34-5239-01 16 66887337 66887337 T A CA7 Missense_Mutation p.V244E 0.25 tolerated(0.07) benign(0.037) TCGA-34-5239-01 16 9862767 9862767 G T GRIN2A Missense_Mutation p.R846S 0.21 deleterious(0) probably_damaging(1) TCGA-34-5239-01 17 10235418 10235418 T A MYH13 Nonsense_Mutation p.K766* 0.53 TCGA-34-5239-01 17 30179203 30179203 G A COPRS Silent p.S170S 0.51 TCGA-34-5239-01 17 43908281 43908281 G T CRHR1 Missense_Mutation p.G278W 0.44 deleterious(0) probably_damaging(0.968) TCGA-34-5239-01 17 49239125 49239125 A G NME1 Silent p.A151A 0.60 TCGA-34-5239-01 17 51901317 51901317 G T KIF2B Missense_Mutation p.G308V 0.51 deleterious(0) probably_damaging(1) TCGA-34-5239-01 17 59482585 59482585 G C TBX2 Silent p.A358A 0.87 TCGA-34-5239-01 17 7579311 7579311 C A TP53 Splice_Site p.X125_splice 0.49 TCGA-34-5239-01 17 7696018 7696018 C T DNAH2 Missense_Mutation p.R2397C 0.06 probably_damaging(1) TCGA-34-5239-01 17 80401866 80401866 G A C17orf62 3'UTR 0.17 TCGA-34-5239-01 17 8079345 8079345 C A TMEM107 Splice_Site p.X30_splice 0.51 TCGA-34-5239-01 18 13092463 13092463 G A CEP192 Missense_Mutation p.R2064K 0.30 tolerated(0.1) benign(0.36) TCGA-34-5239-01 18 13826480 13826480 C T MC5R Missense_Mutation p.T239I 0.10 deleterious(0.01) benign(0.192) TCGA-34-5239-01 18 14179461 14179461 C T ANKRD20A5P RNA 0.12 TCGA-34-5239-01 18 28993359 28993359 C A DSG4 Missense_Mutation p.P994H 0.35 tolerated(0.08) possibly_damaging(0.605) TCGA-34-5239-01 18 39609304 39609304 A T PIK3C3 Nonsense_Mutation p.R536* 0.35 TCGA-34-5239-01 18 44549187 44549187 G A TCEB3CL Missense_Mutation p.T371M 0.07 deleterious(0) possibly_damaging(0.603) TCGA-34-5239-01 18 56184260 56184260 G C ALPK2 Missense_Mutation p.H1940Q 0.29 tolerated(1) benign(0.007) TCGA-34-5239-01 18 59157860 59157860 T C CDH20 Missense_Mutation p.L25P 0.29 tolerated(0.06) possibly_damaging(0.816) TCGA-34-5239-01 18 74587471 74587471 G C ZNF236 Missense_Mutation p.E229Q 0.25 tolerated(0.28) possibly_damaging(0.653) TCGA-34-5239-01 19 1255030 1255030 G T MIDN Missense_Mutation p.A276S 0.34 tolerated(0.13) possibly_damaging(0.515) TCGA-34-5239-01 19 12577614 12577614 C A ZNF709 Missense_Mutation p.W18C 0.31 deleterious(0) benign(0.043) TCGA-34-5239-01 19 14578739 14578739 C G PKN1 Missense_Mutation p.L652V 0.30 deleterious(0) probably_damaging(0.996) TCGA-34-5239-01 19 14682710 14682710 T A NDUFB7 Nonsense_Mutation p.K35* 0.23 TCGA-34-5239-01 19 1506294 1506294 C T ADAMTSL5 Missense_Mutation p.G379D 0.30 deleterious(0.04) possibly_damaging(0.809) TCGA-34-5239-01 19 17945801 17945801 T C JAK3 Missense_Mutation p.R687G 0.34 deleterious(0) probably_damaging(0.992) TCGA-34-5239-01 19 18279581 18279591 GGAACGCACTT - PIK3R2 Frame_Shift_Del p.E619Vfs*188 0.16 TCGA-34-5239-01 19 20044384 20044384 G T ZNF93 Missense_Mutation p.G207V 0.15 deleterious(0) probably_damaging(0.969) TCGA-34-5239-01 19 36940165 36940165 G A ZNF566 Missense_Mutation p.S325L 0.25 tolerated(0.05) possibly_damaging(0.859) TCGA-34-5239-01 19 40097920 40097920 G C LGALS13 Missense_Mutation p.V121L 0.34 deleterious(0.02) probably_damaging(0.946) TCGA-34-5239-01 19 40362888 40362888 G A FCGBP Missense_Mutation p.A5061V 0.03 benign(0.362) TCGA-34-5239-01 19 41086788 41086788 G A SHKBP1 Missense_Mutation p.G264S 0.14 tolerated(0.14) benign(0.043) TCGA-34-5239-01 19 41594547 41594547 C A CYP2A13 Silent p.S57S 0.24 TCGA-34-5239-01 19 44222665 44222665 T A IRGC 5'UTR 0.29 TCGA-34-5239-01 19 44932887 44932887 C A ZNF229 Missense_Mutation p.G690V 0.30 deleterious(0) probably_damaging(1) TCGA-34-5239-01 19 45593579 45593579 C T GEMIN7 Silent p.S69S 0.26 TCGA-34-5239-01 19 48789058 48789058 G T ZNF114 Missense_Mutation p.Q59H 0.33 deleterious(0.03) benign(0.02) TCGA-34-5239-01 19 52147192 52147192 C A SIGLEC14 Silent p.L284L 0.28 TCGA-34-5239-01 19 5455728 5455728 C A ZNRF4 Missense_Mutation p.P76T 0.21 deleterious(0.04) possibly_damaging(0.563) TCGA-34-5239-01 19 55106308 55106308 C A LILRA1 Missense_Mutation p.F83L 0.34 tolerated(0.07) probably_damaging(0.93) TCGA-34-5239-01 19 55333141 55333141 G T KIR3DL1 Silent p.G259G 0.45 TCGA-34-5239-01 19 56422082 56422082 G T NLRP13 Missense_Mutation p.S710Y 0.34 tolerated(1) benign(0.012) TCGA-34-5239-01 19 58806806 58806806 A G ZNF8 Silent p.Q544Q 0.10 TCGA-34-5239-01 19 6825111 6825111 G T VAV1 Missense_Mutation p.E234D 0.23 tolerated(0.43) possibly_damaging(0.556) TCGA-34-5239-01 19 8130938 8130938 C A FBN3 Silent p.R2765R 0.26 TCGA-34-5239-01 19 9046849 9046849 G C MUC16 Missense_Mutation p.N11594K 0.33 benign(0.007) TCGA-34-5239-01 19 9070865 9070865 G A MUC16 Silent p.S5527S 0.38 TCGA-34-5239-01 19 9085224 9085224 G C MUC16 Missense_Mutation p.N2197K 0.35 unknown(0) TCGA-34-5239-01 1 103352377 103352377 G T COL11A1 Missense_Mutation p.P1615H 0.17 unknown(0) TCGA-34-5239-01 1 11181422 11181422 C A MTOR Missense_Mutation p.A2272S 0.19 deleterious(0.02) possibly_damaging(0.548) TCGA-34-5239-01 1 144816543 144816543 A C NBPF9 Missense_Mutation p.N225H 0.14 deleterious(0.03) probably_damaging(0.994) TCGA-34-5239-01 1 144892098 144892098 C A PDE4DIP Intron 0.32 TCGA-34-5239-01 1 145474235 145474235 G A ANKRD34A Missense_Mutation p.E303K 0.21 tolerated(0.99) benign(0.162) TCGA-34-5239-01 1 151134303 151134303 G A LYSMD1 Missense_Mutation p.L152F 0.29 deleterious(0) probably_damaging(0.989) TCGA-34-5239-01 1 151372951 151372951 C T PSMB4 Silent p.S127S 0.08 TCGA-34-5239-01 1 152057612 152057612 A C TCHHL1 Missense_Mutation p.F849C 0.34 deleterious(0.02) possibly_damaging(0.667) TCGA-34-5239-01 1 152057616 152057616 C G TCHHL1 Missense_Mutation p.V848L 0.36 tolerated(0.24) benign(0.081) TCGA-34-5239-01 1 152648858 152648858 G A LCE2C 3'UTR 0.19 TCGA-34-5239-01 1 154304496 154304496 G A ATP8B2 Missense_Mutation p.D202N 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-34-5239-01 1 157514826 157514826 A G FCRL5 Silent p.S118S 0.38 TCGA-34-5239-01 1 159922310 159922310 G C SLAMF9 Missense_Mutation p.P136A 0.24 deleterious(0.04) probably_damaging(0.994) TCGA-34-5239-01 1 161647118 161647118 C A FCGR2B Missense_Mutation p.A273D 0.25 tolerated(0.1) benign(0.046) TCGA-34-5239-01 1 165649797 165649797 G A ALDH9A1 Missense_Mutation p.T239I 0.39 tolerated(0.08) probably_damaging(0.979) TCGA-34-5239-01 1 175054540 175054540 G T TNN Splice_Site p.X412_splice 0.33 TCGA-34-5239-01 1 176132955 176132955 C T RFWD2 Missense_Mutation p.S213N 0.45 tolerated(0.08) benign(0.015) TCGA-34-5239-01 1 176564618 176564618 G A PAPPA2 Silent p.G626G 0.13 TCGA-34-5239-01 1 179853882 179853882 C GT TOR1AIP1 Frame_Shift_Ins p.R178* 0.19 TCGA-34-5239-01 1 190423895 190423895 G T BRINP3 Missense_Mutation p.S42R 0.32 tolerated_low_confidence(0.25) benign(0.039) TCGA-34-5239-01 1 207078306 207078306 G C FAIM3 3'UTR 0.11 TCGA-34-5239-01 1 216260067 216260067 C A USH2A Missense_Mutation p.D1661Y 0.35 probably_damaging(0.987) TCGA-34-5239-01 1 236883405 236883405 A C ACTN2 Missense_Mutation p.E121A 0.32 deleterious(0) possibly_damaging(0.839) TCGA-34-5239-01 1 237893559 237893559 G T RYR2 Splice_Site p.X3613_splice 0.47 TCGA-34-5239-01 1 237893560 237893560 G T RYR2 Missense_Mutation p.R3613S 0.47 benign(0.146) TCGA-34-5239-01 1 238048518 238048518 A C ZP4 Missense_Mutation p.F420V 0.23 tolerated(0.5) benign(0.216) TCGA-34-5239-01 1 28599167 28599167 C T SESN2 Missense_Mutation p.H205Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-34-5239-01 1 39905023 39905023 T C MACF1 Missense_Mutation p.F4041L 0.21 benign(0.063) TCGA-34-5239-01 1 40230534 40230534 G T BMP8B Intron 0.30 TCGA-34-5239-01 1 65854059 65854059 G T DNAJC6 Missense_Mutation p.G385V 0.31 deleterious(0) probably_damaging(1) TCGA-34-5239-01 1 70446061 70446061 G A LRRC7 Splice_Site p.X200_splice 0.21 TCGA-34-5239-01 1 70451935 70451935 A T LRRC7 Missense_Mutation p.K228M 0.15 tolerated(0.1) possibly_damaging(0.838) TCGA-34-5239-01 1 71437389 71437389 A G PTGER3 Intron 0.19 TCGA-34-5239-01 1 75038652 75038652 C A C1orf173 Missense_Mutation p.E914D 0.15 tolerated(0.1) possibly_damaging(0.496) TCGA-34-5239-01 1 77333265 77333265 G T ST6GALNAC5 5'UTR 0.47 TCGA-34-5239-01 1 79125075 79125075 G T IFI44 Missense_Mutation p.V307L 0.18 deleterious(0) benign(0.417) TCGA-34-5239-01 1 79383532 79383532 A T ELTD1 Nonsense_Mutation p.Y555* 0.16 TCGA-34-5239-01 1 84399338 84399338 C A TTLL7 Nonsense_Mutation p.G334* 0.14 TCGA-34-5239-01 20 1961487 1961487 C A PDYN Missense_Mutation p.G83W 0.48 deleterious(0.01) possibly_damaging(0.781) TCGA-34-5239-01 20 1961488 1961488 C A PDYN Missense_Mutation p.L82F 0.50 tolerated(0.32) benign(0.235) TCGA-34-5239-01 20 23669511 23669511 A T CST4 Silent p.G32G 0.19 TCGA-34-5239-01 20 2375122 2375122 G T TGM6 Missense_Mutation p.W11L 0.14 tolerated(0.21) probably_damaging(0.976) TCGA-34-5239-01 20 25493536 25493536 C T NINL Silent p.P128P 0.06 TCGA-34-5239-01 20 31960462 31960462 C A CDK5RAP1 Missense_Mutation p.R416I 0.27 deleterious(0) possibly_damaging(0.905) TCGA-34-5239-01 20 3673306 3673306 C T SIGLEC1 Missense_Mutation p.G1298S 0.12 tolerated(0.34) benign(0.29) TCGA-34-5239-01 20 36954788 36954788 C A BPI Missense_Mutation p.A376D 0.22 deleterious(0) probably_damaging(0.975) TCGA-34-5239-01 20 49218725 49218725 C T FAM65C Missense_Mutation p.V511M 0.17 tolerated(0.22) benign(0.006) TCGA-34-5239-01 20 60738679 60738679 G T SS18L1 Splice_Site p.X241_splice 0.44 TCGA-34-5239-01 21 19670050 19670050 C A TMPRSS15 Splice_Site p.X754_splice 0.12 TCGA-34-5239-01 21 45391324 45391324 G A AGPAT3 Silent p.L240L 0.16 TCGA-34-5239-01 21 45811378 45811378 G T TRPM2 Missense_Mutation p.R555L 0.20 tolerated(0.16) benign(0.077) TCGA-34-5239-01 21 45947267 45947267 C T TSPEAR Missense_Mutation p.V353I 0.09 tolerated(1) benign(0.001) TCGA-34-5239-01 22 17443537 17443537 C G GAB4 3'UTR 0.19 TCGA-34-5239-01 22 17990897 17990897 A G CECR2 Missense_Mutation p.D267G 0.26 deleterious(0.04) benign(0.004) TCGA-34-5239-01 22 18020403 18020403 G A CECR2 Missense_Mutation p.E579K 0.40 tolerated(0.07) benign(0.392) TCGA-34-5239-01 22 23487534 23487534 C A RAB36 5'UTR 0.21 TCGA-34-5239-01 22 31059940 31059940 G A DUSP18 Silent p.V17V 0.37 TCGA-34-5239-01 22 31091240 31091240 G A OSBP2 Missense_Mutation p.G115E 0.40 deleterious_low_confidence(0.01) benign(0.255) TCGA-34-5239-01 22 43623418 43623418 G T SCUBE1 Missense_Mutation p.P390Q 0.33 tolerated(0.08) possibly_damaging(0.743) TCGA-34-5239-01 22 44323026 44323026 G T PNPLA3 Silent p.R133R 0.20 TCGA-34-5239-01 2 107423321 107423321 T C ST6GAL2 Missense_Mutation p.Y468C 0.20 probably_damaging(1) TCGA-34-5239-01 2 114503904 114503904 C G SLC35F5 Missense_Mutation p.E144Q 0.43 deleterious(0.04) possibly_damaging(0.84) TCGA-34-5239-01 2 131520539 131520539 C A AMER3 Silent p.P298P 0.39 TCGA-34-5239-01 2 133427492 133427492 C A LYPD1 Missense_Mutation p.G5V 0.07 tolerated_low_confidence(0.28) probably_damaging(0.998) TCGA-34-5239-01 2 135740771 135740771 C G MAP3K19 Intron 0.41 TCGA-34-5239-01 2 141707967 141707967 G A LRP1B Silent p.D991D 0.29 TCGA-34-5239-01 2 152520262 152520262 C A NEB Missense_Mutation p.D1855Y 0.35 probably_damaging(0.989) TCGA-34-5239-01 2 158401074 158401074 C A ACVR1C Missense_Mutation p.G276C 0.40 deleterious(0) probably_damaging(1) TCGA-34-5239-01 2 165970326 165970326 C T SCN3A Silent p.L1223L 0.17 TCGA-34-5239-01 2 166847771 166847771 T G SCN1A Missense_Mutation p.K2005T 0.14 deleterious_low_confidence(0.03) benign(0.024) TCGA-34-5239-01 2 166847856 166847856 T C SCN1A Missense_Mutation p.M1977V 0.20 tolerated(0.25) benign(0.007) TCGA-34-5239-01 2 179393123 179393123 C T TTN Missense_Mutation p.R35752H 0.41 TCGA-34-5239-01 2 179473493 179473493 G T TTN Missense_Mutation p.D17415E 0.15 TCGA-34-5239-01 2 179613239 179613239 G T TTN Intron 0.34 TCGA-34-5239-01 2 179637971 179637971 G T TTN Missense_Mutation p.P2574T 0.19 TCGA-34-5239-01 2 182543312 182543312 A T NEUROD1 Silent p.T92T 0.18 TCGA-34-5239-01 2 197577399 197577399 A T CCDC150 Splice_Site p.X602_splice 0.36 TCGA-34-5239-01 2 207171597 207171597 G T ZDBF2 Missense_Mutation p.S782I 0.34 deleterious(0) possibly_damaging(0.775) TCGA-34-5239-01 2 220332025 220332025 G T SPEG Missense_Mutation p.R1004L 0.15 probably_damaging(0.992) TCGA-34-5239-01 2 235950095 235950095 G T SH3BP4 Missense_Mutation p.A228S 0.19 tolerated(0.77) benign(0.002) TCGA-34-5239-01 2 239013419 239013419 T C ESPNL Missense_Mutation p.L203P 0.47 tolerated(0.21) benign(0.037) TCGA-34-5239-01 2 27448094 27448094 G T CAD Missense_Mutation p.A535S 0.38 deleterious(0) possibly_damaging(0.457) TCGA-34-5239-01 2 32664696 32664696 A T BIRC6 Missense_Mutation p.H1251L 0.16 benign(0.004) TCGA-34-5239-01 2 49190433 49190433 G T FSHR Missense_Mutation p.S509R 0.17 deleterious(0) probably_damaging(1) TCGA-34-5239-01 2 54001636 54001636 G C CHAC2 Missense_Mutation p.G177R 0.34 tolerated(0.45) benign(0.001) TCGA-34-5239-01 2 70408629 70408629 C A C2orf42 Silent p.P163P 0.23 TCGA-34-5239-01 2 71046962 71046962 G A CLEC4F Silent p.T41T 0.13 TCGA-34-5239-01 2 77745534 77745534 G A LRRTM4 Silent p.D487D 0.22 TCGA-34-5239-01 2 79385824 79385824 G T REG3A Missense_Mutation p.H50N 0.32 deleterious(0.04) possibly_damaging(0.562) TCGA-34-5239-01 2 89384752 89384752 G C IGKV3-15 Missense_Mutation p.T89R 0.11 deleterious(0.02) probably_damaging(0.985) TCGA-34-5239-01 2 97749943 97749943 C T FAHD2B Missense_Mutation p.V253I 0.19 tolerated(1) benign(0.315) TCGA-34-5239-01 3 122002609 122002609 T C CASR Missense_Mutation p.I613T 0.31 tolerated(0.29) possibly_damaging(0.573) TCGA-34-5239-01 3 125725779 125725779 T A SLC41A3 Intron 0.42 TCGA-34-5239-01 3 127842517 127842517 G A RUVBL1 Silent p.S17S 0.04 TCGA-34-5239-01 3 131283166 131283166 C A CPNE4 Missense_Mutation p.G319W 0.29 deleterious(0) probably_damaging(1) TCGA-34-5239-01 3 15499735 15499735 G A COLQ Silent p.Y304Y 0.31 TCGA-34-5239-01 3 169539929 169539929 A G LRRIQ4 Missense_Mutation p.R74G 0.35 deleterious(0) possibly_damaging(0.756) TCGA-34-5239-01 3 172674469 172674469 G A SPATA16 Missense_Mutation p.T360I 0.20 deleterious(0) benign(0.008) TCGA-34-5239-01 3 182615170 182615170 C T ATP11B Missense_Mutation p.S1043F 0.15 deleterious(0) benign(0.334) TCGA-34-5239-01 3 184074816 184074816 C G CLCN2 Silent p.R350R 0.18 TCGA-34-5239-01 3 42728190 42728190 G A KLHL40 Silent p.Q360Q 0.40 TCGA-34-5239-01 3 48725676 48725676 C T IP6K2 3'UTR 0.35 TCGA-34-5239-01 3 62636531 62636531 G T CADPS Missense_Mutation p.F398L 0.22 deleterious(0.04) benign(0.153) TCGA-34-5239-01 3 72427648 72427648 C A RYBP Missense_Mutation p.G281V 0.66 deleterious(0) probably_damaging(0.988) TCGA-34-5239-01 3 78987941 78987941 T G ROBO1 Missense_Mutation p.K103N 0.18 deleterious(0) probably_damaging(0.946) TCGA-34-5239-01 3 97467564 97467564 T A EPHA6 3'UTR 0.29 TCGA-34-5239-01 4 100522794 100522794 G A MTTP Missense_Mutation p.D423N 0.44 deleterious(0.01) benign(0.196) TCGA-34-5239-01 4 109674095 109674095 C T ETNPPL Missense_Mutation p.E192K 0.48 deleterious(0.03) possibly_damaging(0.58) TCGA-34-5239-01 4 16035000 16035000 G A PROM1 Nonsense_Mutation p.R146* 0.12 TCGA-34-5239-01 4 177017731 177017731 C A WDR17 Missense_Mutation p.Q21K 0.38 tolerated_low_confidence(0.07) probably_damaging(0.949) TCGA-34-5239-01 4 44638039 44638039 C A YIPF7 Silent p.S84S 0.47 TCGA-34-5239-01 4 47514670 47514670 G A ATP10D Missense_Mutation p.R38H 0.05 tolerated(0.11) benign(0.223) TCGA-34-5239-01 4 49005812 49005812 G A CWH43 Missense_Mutation p.C288Y 0.50 tolerated(0.34) benign(0.188) TCGA-34-5239-01 4 67142549 67142549 C A MIR1269A RNA 0.49 TCGA-34-5239-01 4 71398237 71398237 C A AMTN 3'UTR 0.53 TCGA-34-5239-01 4 72316958 72316958 A G SLC4A4 Missense_Mutation p.H421R 0.53 tolerated(0.4) benign(0.003) TCGA-34-5239-01 5 113740157 113740157 C A KCNN2 Missense_Mutation p.A202E 0.45 deleterious(0.01) probably_damaging(0.992) TCGA-34-5239-01 5 140214507 140214507 T C PCDHA7 Missense_Mutation p.L180P 0.26 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-34-5239-01 5 140720231 140720231 C T PCDHGA2 Missense_Mutation p.P565S 0.55 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-34-5239-01 5 156590281 156590281 C G FAM71B Missense_Mutation p.G332A 0.05 tolerated(0.21) benign(0.059) TCGA-34-5239-01 5 22078744 22078744 C A CDH12 Silent p.L14L 0.33 TCGA-34-5239-01 5 37816199 37816199 C A GDNF Missense_Mutation p.V81F 0.36 deleterious(0) probably_damaging(0.999) TCGA-34-5239-01 5 5465333 5465333 A C KIAA0947 Silent p.T1962T 0.64 TCGA-34-5239-01 5 61779058 61779058 G T IPO11 Missense_Mutation p.C360F 0.49 deleterious(0) probably_damaging(0.982) TCGA-34-5239-01 5 64483906 64483906 G T ADAMTS6 Silent p.V949V 0.45 TCGA-34-5239-01 6 117113452 117113452 G C GPRC6A Silent p.V878V 0.54 TCGA-34-5239-01 6 129612857 129612857 A G LAMA2 Missense_Mutation p.K950E 0.53 tolerated(0.68) benign(0.001) TCGA-34-5239-01 6 161587397 161587397 C T AGPAT4 Silent p.T77T 0.40 TCGA-34-5239-01 6 24547250 24547250 T C KIAA0319 3'UTR 0.42 TCGA-34-5239-01 6 29640205 29640205 C A ZFP57 3'UTR 0.55 TCGA-34-5239-01 6 33141171 33141171 G - COL11A2 Frame_Shift_Del p.P811Lfs*87 0.36 TCGA-34-5239-01 6 35922948 35922948 C T SLC26A8 Missense_Mutation p.G738E 0.45 deleterious(0) probably_damaging(0.948) TCGA-34-5239-01 6 57467142 57467142 C A PRIM2 3'UTR 0.08 TCGA-34-5239-01 6 71666003 71666003 C A B3GAT2 Missense_Mutation p.A44S 0.54 tolerated(0.54) benign(0.001) TCGA-34-5239-01 6 84417641 84417641 C A SNAP91 Silent p.S2S 0.62 TCGA-34-5239-01 7 100364844 100364844 C A ZAN Missense_Mutation p.D1608E 0.16 unknown(0) TCGA-34-5239-01 7 105516902 105516902 T C ATXN7L1 Missense_Mutation p.K35E 0.15 tolerated(0.19) benign(0.2) TCGA-34-5239-01 7 106508148 106508148 C A PIK3CG Missense_Mutation p.Q48K 0.12 tolerated(1) benign(0.001) TCGA-34-5239-01 7 121004196 121004196 C A FAM3C Missense_Mutation p.A107S 0.10 deleterious(0) probably_damaging(0.986) TCGA-34-5239-01 7 121651116 121651116 C T PTPRZ1 Silent p.S672S 0.15 TCGA-34-5239-01 7 123152383 123152383 T A IQUB Missense_Mutation p.Q4H 0.12 deleterious_low_confidence(0.01) benign(0.444) TCGA-34-5239-01 7 126173479 126173479 C G GRM8 Missense_Mutation p.V653L 0.36 tolerated(0.93) benign(0.013) TCGA-34-5239-01 7 133059665 133059665 A T EXOC4 Missense_Mutation p.Q364L 0.12 tolerated(0.12) benign(0.08) TCGA-34-5239-01 7 150488593 150488593 G A TMEM176B 3'UTR 0.41 TCGA-34-5239-01 7 151884527 151884527 C G KMT2C Missense_Mutation p.D1610H 0.33 probably_damaging(0.997) TCGA-34-5239-01 7 1527456 1527456 T C INTS1 Missense_Mutation p.K819R 0.23 tolerated(0.19) benign(0.011) TCGA-34-5239-01 7 23757098 23757098 A G STK31 Splice_Site p.X51_splice 0.32 TCGA-34-5239-01 7 26224208 26224208 C A NFE2L3 Missense_Mutation p.S297Y 0.10 deleterious(0.01) possibly_damaging(0.55) TCGA-34-5239-01 7 30101578 30101578 C T PLEKHA8 Silent p.H388H 0.37 TCGA-34-5239-01 7 30793447 30793447 C A INMT Missense_Mutation p.D85E 0.37 deleterious(0) benign(0.223) TCGA-34-5239-01 7 33407434 33407434 A T BBS9 Missense_Mutation p.L583F 0.16 tolerated(0.32) benign(0.026) TCGA-34-5239-01 7 45725649 45725649 C A ADCY1 Missense_Mutation p.T721N 0.33 tolerated(0.42) benign(0.028) TCGA-34-5239-01 7 48146663 48146663 C G UPP1 Silent p.T210T 0.38 TCGA-34-5239-01 7 5396824 5396824 C A TNRC18 Missense_Mutation p.Q1639H 0.12 benign(0.022) TCGA-34-5239-01 7 57194300 57194300 C A ZNF479 Silent p.L55L 0.19 TCGA-34-5239-01 7 75228545 75228545 G A HIP1 Silent p.A47A 0.17 TCGA-34-5239-01 8 100454784 100454784 G C VPS13B Missense_Mutation p.K1122N 0.53 tolerated(0.24) benign(0.113) TCGA-34-5239-01 8 100833601 100833602 - GAC VPS13B In_Frame_Ins p.T3051dup 0.54 TCGA-34-5239-01 8 102656426 102656426 C G GRHL2 Missense_Mutation p.Q529E 0.06 tolerated(0.23) benign(0.044) TCGA-34-5239-01 8 109241415 109241415 T C EIF3E Missense_Mutation p.T161A 0.48 tolerated(0.3) benign(0.009) TCGA-34-5239-01 8 133726242 133726242 G T TMEM71 Silent p.R272R 0.54 TCGA-34-5239-01 8 139163936 139163936 C A FAM135B Missense_Mutation p.G928C 0.55 tolerated(0.1) benign(0.002) TCGA-34-5239-01 8 139163937 139163937 C A FAM135B Missense_Mutation p.E927D 0.53 tolerated(0.25) benign(0.004) TCGA-34-5239-01 8 145626432 145626432 C A CPSF1 Missense_Mutation p.R142L 0.06 deleterious(0) probably_damaging(0.955) TCGA-34-5239-01 8 146033405 146033405 C T ZNF517 Silent p.H368H 0.71 TCGA-34-5239-01 8 53084559 53084559 C G ST18 Missense_Mutation p.V288L 0.47 tolerated(0.26) benign(0.002) TCGA-34-5239-01 8 53570240 53570240 C T RB1CC1 Missense_Mutation p.V717I 0.59 deleterious_low_confidence(0.03) benign(0.021) TCGA-34-5239-01 8 68934375 68934375 G C PREX2 Missense_Mutation p.L147F 0.44 deleterious(0.01) probably_damaging(0.998) TCGA-34-5239-01 8 88885462 88885462 C A DCAF4L2 Silent p.G246G 0.56 TCGA-34-5239-01 8 90798854 90798854 A G RIPK2 Missense_Mutation p.S355G 0.07 tolerated(0.07) benign(0.001) TCGA-34-5239-01 9 100139102 100139102 C T CCDC180 Nonsense_Mutation p.Q1678* 0.56 TCGA-34-5239-01 9 107549168 107549168 C T ABCA1 Silent p.V2098V 0.55 TCGA-34-5239-01 9 111640380 111640380 T C IKBKAP Silent p.E1250E 0.68 TCGA-34-5239-01 9 115805750 115805750 C A ZFP37 Missense_Mutation p.G383V 0.63 deleterious(0) probably_damaging(0.999) TCGA-34-5239-01 9 115805751 115805751 C A ZFP37 Missense_Mutation p.G383W 0.64 deleterious(0) probably_damaging(1) TCGA-34-5239-01 9 126143708 126143708 G T DENND1A 3'UTR 0.70 TCGA-34-5239-01 9 137674557 137674557 G T COL5A1 Missense_Mutation p.K825N 0.66 unknown(0) TCGA-34-5239-01 9 139289762 139289762 C G SNAPC4 Missense_Mutation p.K153N 0.12 deleterious(0) benign(0.384) TCGA-34-5239-01 9 139815557 139815583 TGGAGATGGAGGCATCCACCTACGATG - TRAF2 In_Frame_Del p.L343_G352delinsW 0.59 TCGA-34-5239-01 9 79117766 79117766 A G GCNT1 Missense_Mutation p.K157E 0.77 deleterious(0) probably_damaging(0.999) TCGA-34-5239-01 9 90581889 90581889 C T CDK20 3'UTR 0.67 TCGA-34-5239-01 X 101576742 101576742 G A NXF2 Missense_Mutation p.G413D 0.25 tolerated(1) benign(0.009) TCGA-34-5239-01 X 128650319 128650319 A C SMARCA1 Missense_Mutation p.I139M 0.62 tolerated(0.12) benign(0.142) TCGA-34-5239-01 X 129148945 129148945 G A BCORL1 Missense_Mutation p.D733N 0.39 probably_damaging(0.929) TCGA-34-5239-01 X 133087079 133087079 T G GPC3 Missense_Mutation p.Q112P 0.57 deleterious(0.01) benign(0.209) TCGA-34-5239-01 X 140995924 140995924 G T MAGEC1 Missense_Mutation p.V912L 0.45 deleterious(0) unknown(0) TCGA-34-5239-01 X 155227360 155227360 T C IL9R 5'UTR 0.36 TCGA-34-5239-01 X 17072970 17072970 G T REPS2 Silent p.L337L 0.38 TCGA-34-5239-01 X 17394302 17394302 A T NHS Missense_Mutation p.D141V 0.57 deleterious(0) probably_damaging(0.999) TCGA-34-5239-01 X 37028600 37028600 C A FAM47C Missense_Mutation p.P706H 0.43 deleterious(0.02) probably_damaging(0.99) TCGA-34-5239-01 X 73811973 73811973 C A RLIM Missense_Mutation p.G393C 0.54 deleterious(0) unknown(0) TCGA-34-5240-01 10 105830203 105830203 C G COL17A1 Silent p.V196V 0.66 TCGA-34-5240-01 10 124746901 124746901 C A PSTK Missense_Mutation p.A310E 0.71 tolerated_low_confidence(0.06) benign(0.004) TCGA-34-5240-01 10 15559136 15559136 T C ITGA8 3'UTR 0.62 TCGA-34-5240-01 10 43015295 43015295 G C ZNF37BP RNA 0.42 TCGA-34-5240-01 10 7409783 7409783 C T SFMBT2 Silent p.P88P 0.67 TCGA-34-5240-01 11 100933389 100933389 T C PGR Silent p.Q667Q 0.04 TCGA-34-5240-01 11 124266547 124266547 C A OR8B3 Missense_Mutation p.R234I 0.55 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-34-5240-01 11 132180043 132180043 C A NTM Silent p.V233V 0.64 TCGA-34-5240-01 11 17518319 17518319 C A USH1C Missense_Mutation p.E844D 0.68 tolerated_low_confidence(0.18) benign(0.013) TCGA-34-5240-01 11 4869883 4869883 A T OR51S1 Missense_Mutation p.Y186N 0.66 deleterious(0) probably_damaging(0.999) TCGA-34-5240-01 11 534286 534286 C G HRAS Missense_Mutation p.G13R 0.39 deleterious(0) probably_damaging(0.992) TCGA-34-5240-01 11 55136334 55136334 C A OR4A15 Silent p.A325A 0.54 TCGA-34-5240-01 11 7673013 7673013 G C PPFIBP2 Missense_Mutation p.E792Q 0.72 tolerated(0.44) probably_damaging(0.995) TCGA-34-5240-01 12 131488796 131488796 G T GPR133 Missense_Mutation p.G404W 0.63 deleterious(0) probably_damaging(1) TCGA-34-5240-01 12 20806880 20806880 G T PDE3A Splice_Site p.X976_splice 0.36 TCGA-34-5240-01 12 27820098 27820098 G T PPFIBP1 Splice_Site p.X348_splice 0.49 TCGA-34-5240-01 12 54741805 54741805 C A COPZ1 Silent p.P139P 0.44 TCGA-34-5240-01 12 56232466 56232466 G T MMP19 Silent p.P273P 0.64 TCGA-34-5240-01 12 57963425 57963425 C T KIF5A Missense_Mutation p.T359M 0.66 tolerated(0.16) possibly_damaging(0.763) TCGA-34-5240-01 12 66786489 66786489 G T GRIP1 Missense_Mutation p.T694N 0.66 deleterious(0) possibly_damaging(0.813) TCGA-34-5240-01 12 81112909 81112909 C A MYF5 3'UTR 0.65 TCGA-34-5240-01 12 8673755 8673755 G A CLEC4D Missense_Mutation p.G179E 0.25 tolerated(1) benign(0.004) TCGA-34-5240-01 12 9307276 9307276 G T PZP Missense_Mutation p.A1237E 0.45 deleterious(0) probably_damaging(0.998) TCGA-34-5240-01 13 103514619 103514619 G A BIVM-ERCC5 Missense_Mutation p.A800T 0.29 tolerated_low_confidence(0.59) benign(0.036) TCGA-34-5240-01 13 48916852 48916852 T G RB1 Splice_Site p.X127_splice 0.65 TCGA-34-5240-01 14 28734128 28734128 C A BNIP3P1 RNA 0.55 TCGA-34-5240-01 14 80668842 80668842 T A DIO2 3'Flank 0.63 TCGA-34-5240-01 15 101586211 101586211 T G LRRK1 Missense_Mutation p.S997A 0.18 tolerated(0.77) benign(0.001) TCGA-34-5240-01 15 40913685 40913685 T - CASC5 Frame_Shift_Del p.I434Nfs*2 0.11 TCGA-34-5240-01 15 49254968 49254968 G A SHC4 Missense_Mutation p.P82L 0.18 deleterious(0.01) benign(0.282) TCGA-34-5240-01 15 49254969 49254969 G T SHC4 Missense_Mutation p.P82T 0.17 tolerated(1) benign(0.014) TCGA-34-5240-01 15 76588074 76588074 G T ETFA Nonsense_Mutation p.S15* 0.51 TCGA-34-5240-01 15 88472482 88472482 C T NTRK3 Silent p.L691L 0.61 TCGA-34-5240-01 16 27078353 27078353 G C C16orf82 RNA 0.47 TCGA-34-5240-01 16 30409782 30409782 C T ZNF48 Missense_Mutation p.P404L 0.24 tolerated(0.3) benign(0.23) TCGA-34-5240-01 16 5141863 5141863 G T FAM86A Missense_Mutation p.L92M 0.05 deleterious(0) possibly_damaging(0.907) TCGA-34-5240-01 16 61689381 61689381 C - CDH8 Frame_Shift_Del p.L633Ffs*3 0.41 TCGA-34-5240-01 16 712030 712030 T C WDR90 Missense_Mutation p.L1335S 0.37 deleterious(0) possibly_damaging(0.637) TCGA-34-5240-01 16 72991632 72991636 GCCAG - ZFHX3 Frame_Shift_Del p.W804Vfs*5 0.62 TCGA-34-5240-01 16 89256738 89256738 G C CDH15 Missense_Mutation p.E356Q 0.26 tolerated(0.59) benign(0.006) TCGA-34-5240-01 17 61513431 61513431 G A CYB561 Silent p.L95L 0.82 TCGA-34-5240-01 17 72522134 72522134 T A CD300LB Silent p.G78G 0.57 TCGA-34-5240-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.57 deleterious(0) probably_damaging(1) TCGA-34-5240-01 18 50683760 50683760 C A DCC Silent p.P432P 0.66 TCGA-34-5240-01 18 72343085 72343085 C T ZNF407 Missense_Mutation p.S37F 0.26 tolerated_low_confidence(0.15) benign(0.002) TCGA-34-5240-01 19 10088094 10088094 C T COL5A3 Missense_Mutation p.G1061R 0.10 probably_damaging(1) TCGA-34-5240-01 19 11304017 11304017 C T KANK2 Missense_Mutation p.E247K 0.42 deleterious(0) probably_damaging(0.996) TCGA-34-5240-01 19 11978607 11978607 G A ZNF439 Silent p.P241P 0.48 TCGA-34-5240-01 19 15131373 15131373 C T CCDC105 Missense_Mutation p.A259V 0.41 deleterious(0.05) probably_damaging(1) TCGA-34-5240-01 19 17644478 17644478 G T FAM129C Missense_Mutation p.R163L 0.29 tolerated(0.71) benign(0.198) TCGA-34-5240-01 19 21476637 21476637 T A ZNF708 Silent p.S377S 0.29 TCGA-34-5240-01 19 22363358 22363358 A G ZNF676 Silent p.H387H 0.36 TCGA-34-5240-01 19 22364229 22364229 C A ZNF676 Missense_Mutation p.G97V 0.32 tolerated(0.17) possibly_damaging(0.792) TCGA-34-5240-01 19 33621226 33621226 G A GPATCH1 3'UTR 0.35 TCGA-34-5240-01 19 36351849 36351849 G A KIRREL2 Missense_Mutation p.V323M 0.25 deleterious(0) probably_damaging(0.994) TCGA-34-5240-01 19 38591796 38591796 C T SIPA1L3 Silent p.F653F 0.40 TCGA-34-5240-01 19 41281408 41281408 C T MIA 5'UTR 0.38 TCGA-34-5240-01 19 41726677 41726677 G A AXL Silent p.Q74Q 0.23 TCGA-34-5240-01 19 47491243 47491243 C G ARHGAP35 Intron 0.47 TCGA-34-5240-01 19 53473312 53473312 T G ZNF702P RNA 0.45 TCGA-34-5240-01 19 54244601 54244601 A C MIR517C RNA 0.28 TCGA-34-5240-01 19 54244630 54244630 A T MIR517C RNA 0.38 TCGA-34-5240-01 19 56539488 56539488 C A NLRP5 Nonsense_Mutation p.S630* 0.56 TCGA-34-5240-01 19 8996459 8996459 C T MUC16 Missense_Mutation p.A13705T 0.41 probably_damaging(0.952) TCGA-34-5240-01 19 9062192 9062192 C T MUC16 Silent p.L8418L 0.17 TCGA-34-5240-01 1 111059902 111059902 C A KCNA10 Missense_Mutation p.G503V 0.22 tolerated_low_confidence(0.22) benign(0.01) TCGA-34-5240-01 1 111059903 111059903 C T KCNA10 Missense_Mutation p.G503S 0.22 tolerated_low_confidence(0.53) benign(0.001) TCGA-34-5240-01 1 11808667 11808667 G T AGTRAP Missense_Mutation p.G122C 0.27 deleterious(0) probably_damaging(0.933) TCGA-34-5240-01 1 157767580 157767580 C - FCRL1 Intron 0.33 TCGA-34-5240-01 1 158225133 158225133 G A CD1A Silent p.Q106Q 0.31 TCGA-34-5240-01 1 158326608 158326608 G C CD1E Missense_Mutation p.Q363H 0.18 tolerated(0.09) benign(0.001) TCGA-34-5240-01 1 158650403 158650403 T G SPTA1 Missense_Mutation p.E216D 0.56 tolerated(0.35) benign(0.005) TCGA-34-5240-01 1 158650429 158650429 C A SPTA1 Missense_Mutation p.V208L 0.19 tolerated(0.2) benign(0.045) TCGA-34-5240-01 1 158686969 158686969 G T OR6K3 Missense_Mutation p.P313T 0.03 tolerated(0.58) benign(0.001) TCGA-34-5240-01 1 169492482 169492482 G T F5 Missense_Mutation p.Q2001K 0.28 tolerated(1) benign(0.006) TCGA-34-5240-01 1 184718701 184718701 G T EDEM3 Missense_Mutation p.H62N 0.09 deleterious(0) probably_damaging(0.998) TCGA-34-5240-01 1 184764870 184764870 G A FAM129A Silent p.L676L 0.25 TCGA-34-5240-01 1 197009796 197009796 C T F13B Missense_Mutation p.R603K 0.16 tolerated(0.16) benign(0.348) TCGA-34-5240-01 1 214531248 214531248 G C PTPN14 3'UTR 0.40 TCGA-34-5240-01 1 216591901 216591901 T G USH2A Silent p.T202T 0.39 TCGA-34-5240-01 1 216591902 216591902 G T USH2A Missense_Mutation p.T202K 0.40 possibly_damaging(0.759) TCGA-34-5240-01 1 22163388 22163388 C G HSPG2 Missense_Mutation p.C3421S 0.22 benign(0.072) TCGA-34-5240-01 1 236925903 236925903 G T ACTN2 Missense_Mutation p.G890V 0.54 deleterious(0) probably_damaging(1) TCGA-34-5240-01 1 247978180 247978180 G C OR14A16 Silent p.P284P 0.46 TCGA-34-5240-01 1 26357960 26357960 C A EXTL1 Missense_Mutation p.P415H 0.60 deleterious(0) probably_damaging(0.982) TCGA-34-5240-01 1 32280096 32280096 G A SPOCD1 Missense_Mutation p.S280L 0.22 tolerated(0.11) benign(0.016) TCGA-34-5240-01 1 47278168 47278168 G A CYP4B1 Missense_Mutation p.G123E 0.58 deleterious(0) possibly_damaging(0.901) TCGA-34-5240-01 1 55551676 55551676 C T USP24 Missense_Mutation p.R2235Q 0.53 deleterious(0) probably_damaging(0.999) TCGA-34-5240-01 1 55603512 55603512 C A USP24 Silent p.V998V 0.17 TCGA-34-5240-01 1 63919644 63919644 C T ITGB3BP Missense_Mutation p.M182I 0.39 tolerated(0.09) benign(0.393) TCGA-34-5240-01 1 67263691 67263691 T A INSL5 3'UTR 0.33 TCGA-34-5240-01 1 70385452 70385452 C T LRRC7 Intron 0.50 TCGA-34-5240-01 1 90049602 90049602 C T LRRC8B Missense_Mutation p.L465F 0.51 deleterious(0) probably_damaging(0.991) TCGA-34-5240-01 1 99753705 99753705 C G LPPR4 Missense_Mutation p.T136R 0.37 deleterious(0.01) probably_damaging(0.959) TCGA-34-5240-01 20 23472195 23472195 T C CST8 5'UTR 0.08 TCGA-34-5240-01 20 36854088 36854088 G T KIAA1755 Silent p.T716T 0.39 TCGA-34-5240-01 20 42831626 42831626 A - OSER1 Frame_Shift_Del p.C56Vfs*19 0.32 TCGA-34-5240-01 20 43571739 43571739 C A TOMM34 3'UTR 0.16 TCGA-34-5240-01 20 43851856 43851856 G T SEMG2 Missense_Mutation p.G528V 0.43 deleterious(0.04) unknown(0) TCGA-34-5240-01 20 44671945 44671945 A G SLC12A5 Missense_Mutation p.Y430C 0.39 deleterious(0) probably_damaging(1) TCGA-34-5240-01 20 51872569 51872569 G T TSHZ2 Missense_Mutation p.A858S 0.33 deleterious(0) probably_damaging(0.996) TCGA-34-5240-01 20 53205081 53205081 T C DOK5 Silent p.H78H 0.03 TCGA-34-5240-01 20 61151580 61151580 C T C20orf166 Intron 0.35 TCGA-34-5240-01 21 15352205 15352205 C G ANKRD20A11P RNA 0.12 TCGA-34-5240-01 21 32127623 32127623 C G KRTAP21-1 Missense_Mutation p.G25A 0.41 tolerated_low_confidence(0.88) unknown(0) TCGA-34-5240-01 21 42613849 42613849 G T BACE2 Missense_Mutation p.G241V 0.39 deleterious(0.02) possibly_damaging(0.579) TCGA-34-5240-01 22 29083831 29083831 G C CHEK2 3'UTR 0.22 TCGA-34-5240-01 22 34046524 34046524 G A LARGE Silent p.L79L 0.36 TCGA-34-5240-01 22 38121247 38121247 C T TRIOBP Missense_Mutation p.S895L 0.28 deleterious_low_confidence(0.02) benign(0.427) TCGA-34-5240-01 22 40816474 40816474 G A MKL1 Missense_Mutation p.R330C 0.58 deleterious(0) probably_damaging(0.988) TCGA-34-5240-01 22 43564146 43564146 C T TTLL12 Silent p.P601P 0.39 TCGA-34-5240-01 2 108507186 108507186 A G RGPD4 Silent p.%3D 0.53 TCGA-34-5240-01 2 120012355 120012355 C T STEAP3 Silent p.S382S 0.53 TCGA-34-5240-01 2 120125000 120125000 G A DBI Missense_Mutation p.G30R 0.53 deleterious_low_confidence(0.03) unknown(0) TCGA-34-5240-01 2 136570431 136570431 C T LCT Silent p.L601L 0.20 TCGA-34-5240-01 2 175619132 175619132 C T CHRNA1 Missense_Mutation p.D144N 0.50 tolerated(0.34) possibly_damaging(0.785) TCGA-34-5240-01 2 178098960 178098960 C G NFE2L2 Missense_Mutation p.D29H 0.52 deleterious(0) probably_damaging(1) TCGA-34-5240-01 2 179498792 179498792 A T TTN Missense_Mutation p.M14145K 0.19 TCGA-34-5240-01 2 179501193 179501193 C T TTN Missense_Mutation p.G13754D 0.21 TCGA-34-5240-01 2 179526556 179526556 G C TTN Silent p.P12405P 0.40 TCGA-34-5240-01 2 200193544 200193544 G A SATB2 Silent p.F421F 0.17 TCGA-34-5240-01 2 202254569 202254569 C A TRAK2 Missense_Mutation p.R383L 0.18 deleterious(0.01) possibly_damaging(0.796) TCGA-34-5240-01 2 206869731 206869731 T C INO80D Silent p.Q815Q 0.19 TCGA-34-5240-01 2 207172252 207172252 A C ZDBF2 Silent p.T1000T 0.21 TCGA-34-5240-01 2 242752418 242752418 G T NEU4 5'UTR 0.86 TCGA-34-5240-01 2 32738147 32738147 A G BIRC6 Silent p.A3498A 0.27 TCGA-34-5240-01 2 49190942 49190942 C T FSHR Missense_Mutation p.E340K 0.27 tolerated(0.51) benign(0.008) TCGA-34-5240-01 2 77745749 77745749 C A LRRTM4 Nonsense_Mutation p.E416* 0.24 TCGA-34-5240-01 2 90260091 90260098 CCCCTGAG AACCCGGAC IGKV1D-8 Frame_Shift_Ins p.A65Efs*39 0.12 TCGA-34-5240-01 2 91843483 91843483 G A AC027612.6 RNA 0.13 TCGA-34-5240-01 3 119347676 119347676 G A PLA1A Missense_Mutation p.G417E 0.12 tolerated(0.06) possibly_damaging(0.792) TCGA-34-5240-01 3 129547121 129547121 A G TMCC1 Missense_Mutation p.L34S 0.19 deleterious_low_confidence(0) benign(0.335) TCGA-34-5240-01 3 134670776 134670776 A G EPHB1 Silent p.A229A 0.64 TCGA-34-5240-01 3 136710897 136710897 G A IL20RB Missense_Mutation p.A217T 0.14 tolerated(0.41) benign(0.041) TCGA-34-5240-01 3 138724640 138724640 C G PRR23A Missense_Mutation p.E157D 0.20 tolerated(0.45) benign(0.028) TCGA-34-5240-01 3 138762858 138762858 G C PRR23C Missense_Mutation p.P202R 0.13 deleterious(0.02) possibly_damaging(0.479) TCGA-34-5240-01 3 154834694 154834694 G A MME Silent p.L191L 0.63 TCGA-34-5240-01 3 159995231 159995232 - T IFT80 Frame_Shift_Ins p.N654Kfs*5 0.09 TCGA-34-5240-01 3 161221119 161221119 G - OTOL1 Frame_Shift_Del p.G275Afs*24 0.51 TCGA-34-5240-01 3 189692442 189692442 C T LEPREL1 Missense_Mutation p.V453I 0.07 deleterious(0.04) benign(0.135) TCGA-34-5240-01 3 196613165 196613165 G A SENP5 Silent p.L371L 0.05 TCGA-34-5240-01 3 93624922 93624922 T C PROS1 Missense_Mutation p.K138E 0.12 deleterious(0.05) benign(0.014) TCGA-34-5240-01 4 123230459 123230459 G C KIAA1109 Missense_Mutation p.L3364F 0.61 possibly_damaging(0.804) TCGA-34-5240-01 4 187524342 187524342 A T FAT1 Missense_Mutation p.C3780S 0.30 probably_damaging(0.999) TCGA-34-5240-01 4 30724344 30724344 G A PCDH7 Missense_Mutation p.E434K 0.74 deleterious(0) probably_damaging(0.998) TCGA-34-5240-01 4 46125865 46125865 C T GABRG1 Silent p.R22R 0.64 TCGA-34-5240-01 4 47938411 47938411 T A CNGA1 3'UTR 0.65 TCGA-34-5240-01 4 53386 53386 G T ZNF595 Splice_Site p.X1_splice 0.07 TCGA-34-5240-01 4 55136842 55136842 C A PDGFRA Missense_Mutation p.D388E 0.56 tolerated(0.69) possibly_damaging(0.816) TCGA-34-5240-01 4 56212685 56212685 C T SRD5A3 Missense_Mutation p.S61L 0.88 tolerated(0.25) benign(0) TCGA-34-5240-01 5 1253924 1253924 C T TERT Silent p.K1106K 0.43 TCGA-34-5240-01 5 127729049 127729049 C T FBN2 Missense_Mutation p.R415K 0.65 tolerated(0.29) benign(0.308) TCGA-34-5240-01 5 135583342 135583342 C A TRPC7 Missense_Mutation p.R554L 0.68 deleterious(0.02) probably_damaging(1) TCGA-34-5240-01 5 140214080 140214080 G A PCDHA7 Missense_Mutation p.E38K 0.67 deleterious_low_confidence(0.02) probably_damaging(0.97) TCGA-34-5240-01 5 140250029 140250029 G - PCDHA11 Frame_Shift_Del p.N448Tfs*16 0.54 TCGA-34-5240-01 5 141243253 141243253 C A PCDH1 Missense_Mutation p.E881D 0.66 tolerated(0.47) benign(0.023) TCGA-34-5240-01 5 169533492 169533492 C T FOXI1 Silent p.L177L 0.54 TCGA-34-5240-01 5 24511474 24511474 C T CDH10 Missense_Mutation p.E322K 0.38 deleterious(0) benign(0.057) TCGA-34-5240-01 5 34863137 34863137 G A TTC23L Missense_Mutation p.V172M 0.03 tolerated(0.23) benign(0.197) TCGA-34-5240-01 5 36051998 36051998 G T UGT3A2 Missense_Mutation p.F95L 0.33 tolerated(0.67) benign(0.008) TCGA-34-5240-01 5 38921735 38921735 G A OSMR Missense_Mutation p.R535K 0.33 tolerated(0.12) benign(0.078) TCGA-34-5240-01 5 41009428 41009428 A T MROH2B Missense_Mutation p.L1125Q 0.39 deleterious(0) probably_damaging(0.997) TCGA-34-5240-01 6 10586481 10586481 C G GCNT2 Intron 0.21 TCGA-34-5240-01 6 107391717 107391717 G A BEND3 Silent p.R226R 0.66 TCGA-34-5240-01 6 133044217 133044217 A C VNN3 Intron 0.70 TCGA-34-5240-01 6 25983831 25983831 G T TRIM38 Silent p.P438P 0.59 TCGA-34-5240-01 6 39874178 39874178 G C MOCS1 3'UTR 0.63 TCGA-34-5240-01 6 46977155 46977155 G A GPR110 Silent p.F672F 0.65 TCGA-34-5240-01 6 70970387 70970387 G T COL9A1 Silent p.T474T 0.66 TCGA-34-5240-01 6 7581127 7581142 GCAGAAGCAGAAGGTG - DSP Frame_Shift_Del p.Q1569Kfs*4 0.78 TCGA-34-5240-01 7 137237168 137237168 C A DGKI Missense_Mutation p.Q698H 0.48 deleterious(0) probably_damaging(0.997) TCGA-34-5240-01 7 137266637 137266637 C G DGKI Missense_Mutation p.G534A 0.44 deleterious(0) probably_damaging(1) TCGA-34-5240-01 7 149172312 149172312 C G ZNF746 Missense_Mutation p.E367D 0.40 tolerated(0.27) probably_damaging(0.953) TCGA-34-5240-01 7 18674283 18674283 G T HDAC9 Missense_Mutation p.G277V 0.50 deleterious(0.04) probably_damaging(1) TCGA-34-5240-01 7 21639577 21639577 A T DNAH11 Missense_Mutation p.Q947L 0.22 possibly_damaging(0.506) TCGA-34-5240-01 7 31378049 31378049 G T NEUROD6 Silent p.T278T 0.49 TCGA-34-5240-01 7 57529162 57529162 C A ZNF716 Missense_Mutation p.A332D 0.40 deleterious(0.02) possibly_damaging(0.758) TCGA-34-5240-01 7 72985210 72985210 C A TBL2 Missense_Mutation p.G324V 0.23 tolerated(0.2) benign(0.272) TCGA-34-5240-01 7 86415870 86415870 G T GRM3 Missense_Mutation p.K254N 0.39 tolerated(0.19) benign(0.003) TCGA-34-5240-01 7 88964707 88964707 G T ZNF804B Missense_Mutation p.C804F 0.41 tolerated(0.7) benign(0.086) TCGA-34-5240-01 7 92844914 92844914 A G HEPACAM2 Missense_Mutation p.V172A 0.47 tolerated(0.05) possibly_damaging(0.787) TCGA-34-5240-01 7 98546248 98546248 A G TRRAP Silent p.T1569T 0.26 TCGA-34-5240-01 8 124157050 124157050 G T TBC1D31 Nonsense_Mutation p.E977* 0.60 TCGA-34-5240-01 8 133899340 133899340 C T TG Missense_Mutation p.P575S 0.05 deleterious(0) possibly_damaging(0.904) TCGA-34-5240-01 8 4494992 4494992 G A CSMD1 Silent p.C58C 0.31 TCGA-34-5240-01 8 67507919 67507919 C T MYBL1 Missense_Mutation p.D196N 0.35 tolerated(0.06) benign(0.129) TCGA-34-5240-01 8 88885742 88885742 G T DCAF4L2 Missense_Mutation p.P153Q 0.61 deleterious(0.01) benign(0.285) TCGA-34-5240-01 9 113191430 113191430 C A SVEP1 Nonsense_Mutation p.G1934* 0.45 TCGA-34-5240-01 9 120053768 120053768 A G ASTN2 Missense_Mutation p.I156T 0.66 deleterious_low_confidence(0) benign(0.291) TCGA-34-5240-01 9 140135797 140135797 C T TUBB4B 5'UTR 0.80 TCGA-34-5240-01 9 35105947 35105947 G T FAM214B Silent p.T426T 0.26 TCGA-34-5240-01 9 36846876 36846876 T A PAX5 Missense_Mutation p.N355Y 0.61 deleterious(0.05) possibly_damaging(0.516) TCGA-34-5240-01 X 100645983 100645983 G T RPL36A Silent p.P20P 0.19 TCGA-34-5240-01 X 10096159 10096159 C A WWC3 Silent p.S746S 0.25 TCGA-34-5240-01 X 10163115 10163115 G T CLCN4 Nonsense_Mutation p.E137* 0.15 TCGA-34-5240-01 X 119005420 119005420 C T RNF113A Missense_Mutation p.V53M 0.23 deleterious(0) probably_damaging(0.953) TCGA-34-5240-01 X 120009074 120009074 G T CT47B1 Missense_Mutation p.L151M 0.22 tolerated(0.3) probably_damaging(0.996) TCGA-34-5240-01 X 123556176 123556176 C A TENM1 Missense_Mutation p.G1473C 0.20 deleterious(0) probably_damaging(0.984) TCGA-34-5240-01 X 128649954 128649954 G A SMARCA1 Missense_Mutation p.T149I 0.60 deleterious(0) probably_damaging(0.944) TCGA-34-5240-01 X 12906213 12906213 C G TLR7 Silent p.L862L 0.20 TCGA-34-5240-01 X 131188764 131188764 G A MST4 Missense_Mutation p.V50I 0.18 deleterious(0.01) possibly_damaging(0.714) TCGA-34-5240-01 X 132887631 132887631 C A GPC3 Nonsense_Mutation p.E304* 0.21 TCGA-34-5240-01 X 13337087 13337087 T C ATXN3L Missense_Mutation p.S323G 0.20 tolerated_low_confidence(0.12) benign(0.012) TCGA-34-5240-01 X 135290627 135290627 G C FHL1 Missense_Mutation p.G172A 0.48 deleterious(0.02) possibly_damaging(0.576) TCGA-34-5240-01 X 144905394 144905394 G T SLITRK2 Missense_Mutation p.R484L 0.48 deleterious(0) possibly_damaging(0.483) TCGA-34-5240-01 X 36007686 36007686 C G CXorf22 3'UTR 0.19 TCGA-34-5240-01 X 37984550 37984550 G T SYTL5 Splice_Site p.X636_splice 0.51 TCGA-34-5240-01 X 41586456 41586456 T C GPR82 Silent p.T59T 0.18 TCGA-34-5240-01 X 41586457 41586457 G T GPR82 Missense_Mutation p.A60S 0.17 tolerated(0.47) possibly_damaging(0.648) TCGA-34-5240-01 X 44870203 44870203 C T KDM6A Intron 0.18 TCGA-34-5240-01 X 48244844 48244844 T A SSX4 Missense_Mutation p.F79I 0.13 tolerated(0.3) benign(0.009) TCGA-34-5240-01 X 48752384 48752384 C G TIMM17B Missense_Mutation p.G93R 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-34-5240-01 X 48935748 48935748 G A WDR45 Nonsense_Mutation p.Q3* 0.20 TCGA-34-5240-01 X 49143513 49143513 G T PPP1R3F Silent p.L787L 0.22 TCGA-34-5240-01 X 50053232 50053232 C A CCNB3 Missense_Mutation p.S688Y 0.32 tolerated(0.06) benign(0.103) TCGA-34-5240-01 X 50053233 50053233 C A CCNB3 Silent p.S688S 0.32 TCGA-34-5240-01 X 65414988 65414988 A G HEPH Missense_Mutation p.Y527C 0.51 tolerated(0.14) probably_damaging(0.981) TCGA-34-5240-01 X 70386935 70386935 T G NLGN3 Missense_Mutation p.Y330D 0.28 deleterious(0.02) probably_damaging(1) TCGA-34-5240-01 X 70836522 70836522 C A CXCR3 Missense_Mutation p.C314F 0.22 deleterious(0) probably_damaging(0.998) TCGA-34-5240-01 X 73524598 73524598 A T ZCCHC13 Missense_Mutation p.Q166L 0.15 deleterious_low_confidence(0) unknown(0) TCGA-34-5240-01 X 74293757 74293757 G T ABCB7 Missense_Mutation p.T298N 0.17 deleterious(0) possibly_damaging(0.543) TCGA-34-5240-01 X 75003752 75003752 G T MAGEE2 Missense_Mutation p.L379I 0.49 tolerated(1) probably_damaging(0.992) TCGA-34-5240-01 X 75003753 75003753 G T MAGEE2 Nonsense_Mutation p.Y378* 0.49 TCGA-34-5240-01 X 75648895 75648895 C A MAGEE1 Missense_Mutation p.T191N 0.18 deleterious_low_confidence(0.01) benign(0.324) TCGA-34-5240-01 X 78216995 78216995 C T P2RY10 Silent p.S326S 0.46 TCGA-34-5240-01 X 85218964 85218964 A G CHM Silent p.S136S 0.20 TCGA-34-5240-01 X 85994853 85994853 C T DACH2 Missense_Mutation p.P403L 0.23 tolerated(0.11) benign(0.411) TCGA-34-5240-01 X 86067939 86067939 G A DACH2 Missense_Mutation p.G441R 0.59 deleterious(0) probably_damaging(0.993) TCGA-34-5241-01 10 104678851 104678851 C G CNNM2 Missense_Mutation p.S205W 0.08 tolerated(0.06) possibly_damaging(0.6) TCGA-34-5241-01 10 118306930 118306930 A G PNLIP Silent p.L57L 0.16 TCGA-34-5241-01 10 118666240 118666240 T A KIAA1598 Missense_Mutation p.T460S 0.12 tolerated(0.72) benign(0.002) TCGA-34-5241-01 10 12867692 12867692 G T CAMK1D Intron 0.07 TCGA-34-5241-01 10 134996964 134996964 G A KNDC1 Silent p.A159A 0.46 TCGA-34-5241-01 10 50227594 50227594 G A VSTM4 3'UTR 0.17 TCGA-34-5241-01 10 50916479 50916479 C G C10orf53 Missense_Mutation p.P97R 0.16 deleterious_low_confidence(0) benign(0.002) TCGA-34-5241-01 10 55582030 55582030 G C PCDH15 Missense_Mutation p.P1821R 0.21 deleterious_low_confidence(0) unknown(0) TCGA-34-5241-01 10 76854469 76854469 C A DUSP13 Missense_Mutation p.D238Y 0.14 deleterious(0) probably_damaging(1) TCGA-34-5241-01 11 108382800 108382800 G A EXPH5 Missense_Mutation p.S1145L 0.18 tolerated(0.33) benign(0.04) TCGA-34-5241-01 11 119031653 119031653 T C ABCG4 Missense_Mutation p.L593S 0.11 tolerated(0.94) benign(0) TCGA-34-5241-01 11 120351028 120351028 G C ARHGEF12 Missense_Mutation p.D1376H 0.26 deleterious_low_confidence(0) possibly_damaging(0.548) TCGA-34-5241-01 11 123676209 123676209 G A OR6M1 Silent p.N283N 0.08 TCGA-34-5241-01 11 124179954 124179954 C G OR8D1 Missense_Mutation p.A237P 0.07 deleterious(0) probably_damaging(0.969) TCGA-34-5241-01 11 124253141 124253141 C G OR8B2 Silent p.V33V 0.06 TCGA-34-5241-01 11 18252991 18252991 G T SAA4 3'UTR 0.15 TCGA-34-5241-01 11 43427358 43427358 G A TTC17 Missense_Mutation p.D540N 0.21 tolerated(0.5) benign(0.093) TCGA-34-5241-01 11 4471203 4471203 G T OR52K2 Missense_Mutation p.D212Y 0.07 deleterious(0) probably_damaging(0.992) TCGA-34-5241-01 11 56043941 56043941 C T OR5T1 Missense_Mutation p.S276F 0.07 deleterious(0.01) possibly_damaging(0.634) TCGA-34-5241-01 11 59245455 59245455 C T OR4D10 Missense_Mutation p.L185F 0.20 deleterious(0) benign(0.169) TCGA-34-5241-01 11 59947439 59947439 C G MS4A6A Splice_Site p.X78_splice 0.22 TCGA-34-5241-01 11 613863 613863 C T IRF7 Missense_Mutation p.E270K 0.14 tolerated(0.72) benign(0.112) TCGA-34-5241-01 11 67414401 67414401 G A ACY3 Silent p.P38P 0.38 TCGA-34-5241-01 11 6816033 6816033 T A OR6A2 Nonsense_Mutation p.K303* 0.06 TCGA-34-5241-01 11 7110337 7110337 G A RBMXL2 5'UTR 0.18 TCGA-34-5241-01 11 83170865 83170865 A T DLG2 Nonsense_Mutation p.L975* 0.13 TCGA-34-5241-01 12 10772754 10772754 T C STYK1 Missense_Mutation p.S420G 0.16 deleterious(0) benign(0.188) TCGA-34-5241-01 12 11182996 11182996 C A TAS2R31 3'UTR 0.22 TCGA-34-5241-01 12 124915247 124915247 C A NCOR2 Silent p.R323R 0.11 TCGA-34-5241-01 12 133236019 133236019 T C POLE Missense_Mutation p.Y1046C 0.06 deleterious(0) probably_damaging(1) TCGA-34-5241-01 12 13906475 13906475 C A GRIN2B Silent p.V262V 0.18 TCGA-34-5241-01 12 26580988 26580988 C T ITPR2 Nonsense_Mutation p.W2268* 0.25 TCGA-34-5241-01 12 29665042 29665042 C A TMTC1 Silent p.V814V 0.18 TCGA-34-5241-01 12 33592640 33592640 G A SYT10 5'UTR 0.38 TCGA-34-5241-01 12 4737300 4737300 C A AKAP3 Missense_Mutation p.E256D 0.25 tolerated(0.22) benign(0.094) TCGA-34-5241-01 12 4919480 4919480 C A KCNA6 Silent p.P91P 0.17 TCGA-34-5241-01 12 66700221 66700221 C G HELB Nonsense_Mutation p.S235* 0.03 TCGA-34-5241-01 12 77427797 77427797 T C E2F7 Silent p.A383A 0.17 TCGA-34-5241-01 12 8765436 8765436 G T AICDA 5'UTR 0.25 TCGA-34-5241-01 13 108862236 108862236 C T LIG4 Missense_Mutation p.E461K 0.10 deleterious(0.05) benign(0.013) TCGA-34-5241-01 13 108922301 108922301 G C TNFSF13B Missense_Mutation p.E20Q 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.783) TCGA-34-5241-01 13 99374113 99374113 C G SLC15A1 Missense_Mutation p.G137A 0.17 deleterious(0) probably_damaging(1) TCGA-34-5241-01 14 101531852 101531852 C A MIR412 RNA 0.12 TCGA-34-5241-01 14 102489135 102489135 C T DYNC1H1 Missense_Mutation p.T2852M 0.10 benign(0.003) TCGA-34-5241-01 14 102552558 102552558 G C HSP90AA1 Nonsense_Mutation p.S175* 0.09 TCGA-34-5241-01 14 21360053 21360053 T A RNASE3 Missense_Mutation p.F70I 0.07 deleterious(0) probably_damaging(1) TCGA-34-5241-01 14 35072621 35072621 C T SNX6 Missense_Mutation p.R162H 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-34-5241-01 14 45716223 45716223 A G MIS18BP1 Silent p.S89S 0.10 TCGA-34-5241-01 14 57676676 57676676 T C EXOC5 Missense_Mutation p.T573A 0.17 deleterious(0.01) probably_damaging(0.93) TCGA-34-5241-01 14 59112663 59112663 C T DACT1 Missense_Mutation p.S441L 0.17 deleterious(0.04) benign(0.059) TCGA-34-5241-01 14 60592500 60592500 G A PCNXL4 Missense_Mutation p.E842K 0.26 deleterious(0.01) benign(0.314) TCGA-34-5241-01 15 25213195 25213195 G T SNRPN 5'UTR 0.10 TCGA-34-5241-01 15 38762541 38762541 A G FAM98B Missense_Mutation p.T156A 0.16 tolerated(0.9) benign(0.007) TCGA-34-5241-01 15 48051973 48051973 C A SEMA6D 5'UTR 0.26 TCGA-34-5241-01 15 72810448 72810448 A G ARIH1 Missense_Mutation p.N139S 0.17 deleterious(0.04) benign(0.01) TCGA-34-5241-01 15 75942369 75942369 G T SNX33 Missense_Mutation p.R309I 0.09 tolerated(0.06) possibly_damaging(0.745) TCGA-34-5241-01 15 85400111 85400111 G T ALPK3 Silent p.G916G 0.08 TCGA-34-5241-01 16 12875206 12875206 T G CPPED1 Missense_Mutation p.Q42P 0.24 deleterious(0) probably_damaging(0.999) TCGA-34-5241-01 16 20873484 20873484 C A DCUN1D3 Missense_Mutation p.R126L 0.21 tolerated(0.13) benign(0.002) TCGA-34-5241-01 16 28914357 28914357 C A ATP2A1 Silent p.S917S 0.17 TCGA-34-5241-01 16 28931216 28931216 C A RABEP2 Missense_Mutation p.R108L 0.29 deleterious(0.01) possibly_damaging(0.545) TCGA-34-5241-01 16 30667243 30667243 A G PRR14 Silent p.Q487Q 0.17 TCGA-34-5241-01 16 30676187 30676187 C A FBRS Missense_Mutation p.H503Q 0.24 probably_damaging(0.936) TCGA-34-5241-01 16 32893929 32893929 G A RP11-989E6.3 5'Flank 0.13 TCGA-34-5241-01 16 49672006 49672006 G A ZNF423 Missense_Mutation p.H353Y 0.09 deleterious(0) benign(0.371) TCGA-34-5241-01 16 67005199 67005217 TCAGTTTTTCAAGATACCT - CES3 Frame_Shift_Del p.S424Efs*27 0.16 TCGA-34-5241-01 16 81965174 81965174 C T PLCG2 Missense_Mutation p.P885L 0.19 tolerated(0.11) benign(0.049) TCGA-34-5241-01 16 90001715 90001715 G T TUBB3 Missense_Mutation p.V286L 0.20 deleterious_low_confidence(0) benign(0.369) TCGA-34-5241-01 17 32963124 32963124 C A TMEM132E Silent p.A602A 0.12 TCGA-34-5241-01 17 48433473 48433473 A T XYLT2 Missense_Mutation p.S445C 0.16 deleterious(0) probably_damaging(0.974) TCGA-34-5241-01 17 7125526 7125526 C G ACADVL Silent p.V284V 0.11 TCGA-34-5241-01 17 72613399 72613399 C T CD300E Silent p.P82P 0.17 TCGA-34-5241-01 17 73911124 73911124 C T FBF1 Missense_Mutation p.E853K 0.11 deleterious(0.03) benign(0.121) TCGA-34-5241-01 17 7578239 7578239 C A TP53 Nonsense_Mutation p.E204* 0.40 TCGA-34-5241-01 18 43534788 43534788 T A EPG5 Missense_Mutation p.N194Y 0.27 tolerated_low_confidence(0.17) benign(0.264) TCGA-34-5241-01 18 74627647 74627647 A G ZNF236 Missense_Mutation p.T1034A 0.18 deleterious(0) probably_damaging(0.976) TCGA-34-5241-01 18 74672634 74672634 G - ZNF236 Splice_Site p.X1747_splice 0.17 TCGA-34-5241-01 19 10822884 10822884 G T QTRT1 Missense_Mutation p.G232W 0.09 deleterious(0) probably_damaging(1) TCGA-34-5241-01 19 12187195 12187195 G T ZNF844 Missense_Mutation p.M420I 0.07 tolerated(0.27) benign(0.006) TCGA-34-5241-01 19 14749118 14749118 T C EMR3 Missense_Mutation p.Y428C 0.17 deleterious(0) probably_damaging(0.999) TCGA-34-5241-01 19 16977322 16977322 G A SIN3B Silent p.L619L 0.12 TCGA-34-5241-01 19 23543010 23543010 T A ZNF91 Missense_Mutation p.H924L 0.08 tolerated(0.59) benign(0.194) TCGA-34-5241-01 19 35850606 35850606 G T FFAR3 Missense_Mutation p.D272Y 0.06 deleterious(0) probably_damaging(1) TCGA-34-5241-01 19 3823371 3823371 C T ZFR2 Missense_Mutation p.R415K 0.14 tolerated(0.62) benign(0.006) TCGA-34-5241-01 19 38976748 38976748 C T RYR1 Missense_Mutation p.A1818V 0.09 probably_damaging(0.937) TCGA-34-5241-01 19 39961030 39961030 C T SUPT5H Missense_Mutation p.P515L 0.46 deleterious(0) possibly_damaging(0.688) TCGA-34-5241-01 19 40392538 40392538 A T FCGBP Missense_Mutation p.Y2656N 0.05 benign(0.012) TCGA-34-5241-01 19 40889699 40889699 G A HIPK4 Silent p.A271A 0.08 TCGA-34-5241-01 19 42848624 42848624 G A MEGF8 Missense_Mutation p.R607H 0.21 tolerated(0.09) benign(0.103) TCGA-34-5241-01 19 44252015 44252015 G A SMG9 Missense_Mutation p.A87V 0.07 tolerated(0.6) benign(0.001) TCGA-34-5241-01 19 45004269 45004269 C A ZNF180 Silent p.T8T 0.19 TCGA-34-5241-01 19 4511262 4511262 C T PLIN4 Missense_Mutation p.G890R 0.05 deleterious(0) probably_damaging(1) TCGA-34-5241-01 19 49223921 49223921 C A RASIP1 3'UTR 0.10 TCGA-34-5241-01 19 50386923 50386923 C T TBC1D17 Silent p.R349R 0.09 TCGA-34-5241-01 19 58724035 58724035 G T ZNF274 Silent p.T495T 0.08 TCGA-34-5241-01 19 7688714 7688714 C A XAB2 Missense_Mutation p.R341L 0.17 deleterious(0) probably_damaging(0.995) TCGA-34-5241-01 1 115487590 115487590 T C SYCP1 Missense_Mutation p.M714T 0.15 deleterious(0) probably_damaging(0.999) TCGA-34-5241-01 1 12921340 12921340 C A PRAMEF2 Silent p.S377S 0.12 TCGA-34-5241-01 1 150129646 150129646 G C PLEKHO1 Missense_Mutation p.R164P 0.07 deleterious(0) probably_damaging(0.999) TCGA-34-5241-01 1 154515285 154515285 C G TDRD10 Missense_Mutation p.P164R 0.25 deleterious(0.02) possibly_damaging(0.777) TCGA-34-5241-01 1 154987821 154987821 C T ZBTB7B Missense_Mutation p.H263Y 0.27 tolerated(0.44) benign(0.068) TCGA-34-5241-01 1 156514244 156514254 CCTATAACCCC - IQGAP3 Frame_Shift_Del p.R772Pfs*13 0.21 TCGA-34-5241-01 1 157811571 157811571 C T CD5L 5'UTR 0.33 TCGA-34-5241-01 1 158390306 158390306 G T OR10K2 Silent p.V117V 0.08 TCGA-34-5241-01 1 158576723 158576723 C T OR10Z1 Silent p.H165H 0.24 TCGA-34-5241-01 1 160523892 160523892 C A CD84 Missense_Mutation p.V145L 0.19 tolerated(0.45) benign(0.029) TCGA-34-5241-01 1 160969693 160969693 T C F11R Missense_Mutation p.T223A 0.18 tolerated(0.12) benign(0.001) TCGA-34-5241-01 1 16380179 16380179 C T CLCNKB Silent p.T556T 0.17 TCGA-34-5241-01 1 173776554 173776554 A T CENPL Missense_Mutation p.Y91N 0.07 deleterious(0) probably_damaging(1) TCGA-34-5241-01 1 175087735 175087735 A G TNN Missense_Mutation p.T809A 0.09 deleterious(0) benign(0.248) TCGA-34-5241-01 1 197390707 197390707 C A CRB1 Silent p.I583I 0.17 TCGA-34-5241-01 1 198687220 198687220 T A PTPRC Intron 0.29 TCGA-34-5241-01 1 214705846 214705846 C A PTPN14 Intron 0.24 TCGA-34-5241-01 1 224585860 224585860 A T WDR26 Missense_Mutation p.F571L 0.20 tolerated(0.25) benign(0.27) TCGA-34-5241-01 1 236894559 236894559 G T ACTN2 Silent p.L214L 0.18 TCGA-34-5241-01 1 242042618 242042618 G T EXO1 Missense_Mutation p.Q694H 0.10 tolerated(0.07) benign(0.029) TCGA-34-5241-01 1 248112719 248112719 C A OR2L8 Missense_Mutation p.A187D 0.12 deleterious(0) probably_damaging(0.989) TCGA-34-5241-01 1 248129289 248129289 T A OR2AK2 Missense_Mutation p.L219H 0.16 deleterious(0) probably_damaging(0.992) TCGA-34-5241-01 1 248224543 248224543 C A OR2L3 Missense_Mutation p.A187D 0.05 deleterious(0) probably_damaging(0.978) TCGA-34-5241-01 1 248366375 248366376 - C OR2M3 Frame_Shift_Ins p.R3Qfs*109 0.18 TCGA-34-5241-01 1 248756314 248756314 A G OR2T10 Silent p.Y252Y 0.20 TCGA-34-5241-01 1 26104644 26104644 A G MAN1C1 Missense_Mutation p.I436V 0.23 tolerated(0.22) benign(0.065) TCGA-34-5241-01 1 43076693 43076693 A G CCDC30 Silent p.L476L 0.19 TCGA-34-5241-01 1 46654355 46654355 C A POMGNT1 3'UTR 0.16 TCGA-34-5241-01 1 47685474 47685474 G T TAL1 Missense_Mutation p.T305K 0.23 deleterious(0) probably_damaging(0.992) TCGA-34-5241-01 1 70486756 70486756 G A LRRC7 Missense_Mutation p.V459I 0.22 deleterious(0.02) probably_damaging(0.97) TCGA-34-5241-01 1 8074154 8074154 A G ERRFI1 Missense_Mutation p.C169R 0.08 tolerated(0.84) possibly_damaging(0.624) TCGA-34-5241-01 1 87045261 87045261 G C CLCA4 Missense_Mutation p.V783L 0.25 tolerated(0.72) benign(0.062) TCGA-34-5241-01 20 18393315 18393315 G C DZANK1 Silent p.L469L 0.19 TCGA-34-5241-01 20 1961206 1961206 C T PDYN Silent p.G176G 0.14 TCGA-34-5241-01 20 31644469 31644469 C T BPIFB3 Silent p.H82H 0.15 TCGA-34-5241-01 20 36841678 36841678 T C KIAA1755 Silent p.A1123A 0.16 TCGA-34-5241-01 20 44506140 44506140 G T ZSWIM3 Nonsense_Mutation p.E315* 0.20 TCGA-34-5241-01 20 48160869 48160869 A T PTGIS Missense_Mutation p.L165H 0.10 deleterious(0) probably_damaging(0.941) TCGA-34-5241-01 20 57597992 57597992 C A TUBB1 Nonsense_Mutation p.Y50* 0.16 TCGA-34-5241-01 20 62505056 62505056 G T TPD52L2 Silent p.L67L 0.19 TCGA-34-5241-01 21 11049459 11049459 T C BAGE2 RNA 0.05 TCGA-34-5241-01 22 17072241 17072241 G T CCT8L2 Missense_Mutation p.F400L 0.24 tolerated(0.29) benign(0.119) TCGA-34-5241-01 22 22931026 22931026 C A IGLV2-33 Missense_Mutation p.T74N 0.15 tolerated_low_confidence(0.74) benign(0.003) TCGA-34-5241-01 22 24087013 24087013 C A ZNF70 Missense_Mutation p.Q105H 0.17 deleterious(0.04) benign(0.259) TCGA-34-5241-01 22 29707906 29707906 C T GAS2L1 3'UTR 0.17 TCGA-34-5241-01 22 29924416 29924416 G A THOC5 Missense_Mutation p.T322M 0.18 deleterious(0.02) possibly_damaging(0.698) TCGA-34-5241-01 22 32894331 32894331 C T FBXO7 Silent p.I461I 0.21 TCGA-34-5241-01 22 33700373 33700373 C A LARGE Missense_Mutation p.M524I 0.17 tolerated(0.16) benign(0.173) TCGA-34-5241-01 22 36003275 36003275 A G MB 3'UTR 0.19 TCGA-34-5241-01 22 36236390 36236390 T C RBFOX2 Intron 0.24 TCGA-34-5241-01 2 102842450 102842450 G T IL1RL2 Missense_Mutation p.D362Y 0.13 deleterious(0) probably_damaging(0.99) TCGA-34-5241-01 2 107040730 107040730 G A RGPD3 Silent p.A1231A 0.10 TCGA-34-5241-01 2 120366160 120366160 T C PCDP1 Missense_Mutation p.Y406H 0.05 deleterious(0) probably_damaging(0.999) TCGA-34-5241-01 2 131099680 131099680 G A CCDC115 Nonsense_Mutation p.R7* 0.04 TCGA-34-5241-01 2 155555566 155555566 G T KCNJ3 Silent p.V93V 0.12 TCGA-34-5241-01 2 166894302 166894307 ACCATG - SCN1A In_Frame_Del p.M976_V977del 0.09 TCGA-34-5241-01 2 170097664 170097664 G T LRP2 Missense_Mutation p.D1293E 0.10 possibly_damaging(0.649) TCGA-34-5241-01 2 179443708 179443708 C A TTN Missense_Mutation p.K22683N 0.22 TCGA-34-5241-01 2 179454036 179454036 C A TTN Missense_Mutation p.D20806Y 0.06 TCGA-34-5241-01 2 179574369 179574369 G A TTN Silent p.N9559N 0.08 TCGA-34-5241-01 2 179594592 179594592 T C TTN Missense_Mutation p.T6130A 0.24 TCGA-34-5241-01 2 179718286 179718286 G A CCDC141 Silent p.C1042C 0.07 TCGA-34-5241-01 2 182468564 182468564 C A CERKL Missense_Mutation p.G161C 0.29 deleterious(0) probably_damaging(0.968) TCGA-34-5241-01 2 185803773 185803773 A G ZNF804A 3'UTR 0.12 TCGA-34-5241-01 2 197184251 197184251 T A HECW2 Missense_Mutation p.T455S 0.12 deleterious_low_confidence(0.01) probably_damaging(0.985) TCGA-34-5241-01 2 209302330 209302330 G T PTH2R Missense_Mutation p.A83S 0.12 tolerated(0.6) benign(0.048) TCGA-34-5241-01 2 220440100 220440100 A G INHA Missense_Mutation p.Y318C 0.10 deleterious(0.02) benign(0.327) TCGA-34-5241-01 2 228882606 228882606 G T SPHKAP Missense_Mutation p.S988R 0.12 deleterious(0.04) possibly_damaging(0.516) TCGA-34-5241-01 2 231118045 231118045 G T SP140 Missense_Mutation p.A358S 0.08 tolerated(1) benign(0.066) TCGA-34-5241-01 2 232373737 232373737 C A LINC00471 RNA 0.09 TCGA-34-5241-01 2 233409265 233409265 G A CHRNG Silent p.L408L 0.10 TCGA-34-5241-01 2 236715933 236715934 - G AGAP1 Frame_Shift_Ins p.A337Gfs*13 0.09 TCGA-34-5241-01 2 242127944 242127944 G T ANO7 5'UTR 0.36 TCGA-34-5241-01 2 24299129 24299129 G A SF3B14 5'UTR 0.16 TCGA-34-5241-01 2 27360704 27360704 G T C2orf53 Missense_Mutation p.P165H 0.17 deleterious(0) probably_damaging(0.967) TCGA-34-5241-01 2 27898526 27898526 G C SLC4A1AP Missense_Mutation p.K491N 0.17 deleterious(0.02) possibly_damaging(0.57) TCGA-34-5241-01 2 33824333 33824333 C A FAM98A 5'UTR 0.24 TCGA-34-5241-01 2 55549678 55549678 C G CCDC88A Missense_Mutation p.E1049Q 0.07 deleterious(0.04) probably_damaging(0.999) TCGA-34-5241-01 2 71185191 71185191 G T ATP6V1B1 Nonsense_Mutation p.E64* 0.17 TCGA-34-5241-01 2 74482921 74482921 C T SLC4A5 Missense_Mutation p.E336K 0.12 deleterious(0) possibly_damaging(0.713) TCGA-34-5241-01 2 79350037 79350037 G A REG1A Missense_Mutation p.S131N 0.21 tolerated(0.51) benign(0) TCGA-34-5241-01 2 96919601 96919601 G A TMEM127 Missense_Mutation p.P221L 0.07 deleterious(0.03) probably_damaging(0.992) TCGA-34-5241-01 2 96994036 96994036 G T ITPRIPL1 Nonstop_Mutation p.*564Lext*5 0.37 TCGA-34-5241-01 2 96994044 96994044 G T ITPRIPL1 3'UTR 0.38 TCGA-34-5241-01 3 107510084 107510084 T G BBX Intron 0.16 TCGA-34-5241-01 3 112185163 112185163 G C BTLA Nonsense_Mutation p.S221* 0.10 TCGA-34-5241-01 3 123049746 123049746 C A ADCY5 Nonsense_Mutation p.E546* 0.19 TCGA-34-5241-01 3 127396009 127396009 A T ABTB1 Splice_Site p.X215_splice 0.15 TCGA-34-5241-01 3 136699215 136699215 C A IL20RB Intron 0.33 TCGA-34-5241-01 3 140167449 140167449 G T CLSTN2 Silent p.V292V 0.17 TCGA-34-5241-01 3 145912958 145912958 G T PLSCR4 Missense_Mutation p.L300M 0.18 deleterious(0.05) benign(0.442) TCGA-34-5241-01 3 155199812 155199812 C A PLCH1 Missense_Mutation p.D1343Y 0.32 deleterious_low_confidence(0) possibly_damaging(0.67) TCGA-34-5241-01 3 173996752 173996752 G A NLGN1 Missense_Mutation p.G321S 0.17 deleterious(0.01) probably_damaging(0.993) TCGA-34-5241-01 3 178560689 178560689 C A KCNMB2 Silent p.S224S 0.17 TCGA-34-5241-01 3 25760913 25760913 C G NGLY1 3'UTR 0.19 TCGA-34-5241-01 3 39228499 39228499 C T XIRP1 Missense_Mutation p.G813E 0.13 deleterious(0.05) possibly_damaging(0.868) TCGA-34-5241-01 3 45636444 45636444 A G LIMD1 Missense_Mutation p.K25E 0.18 deleterious(0) probably_damaging(0.997) TCGA-34-5241-01 3 48658973 48658973 T C TMEM89 Missense_Mutation p.M73V 0.31 tolerated_low_confidence(0.13) benign(0.009) TCGA-34-5241-01 3 52507765 52507765 G T NISCH Missense_Mutation p.A229S 0.20 tolerated(0.38) benign(0.258) TCGA-34-5241-01 3 56680878 56680878 A C FAM208A Silent p.L629L 0.21 TCGA-34-5241-01 4 125631556 125631556 G C ANKRD50 Silent p.L37L 0.09 TCGA-34-5241-01 4 13338933 13338933 G C HSP90AB2P RNA 0.08 TCGA-34-5241-01 4 187455630 187455630 A G MTNR1A Missense_Mutation p.F89S 0.22 tolerated(0.13) benign(0.101) TCGA-34-5241-01 4 4317543 4317543 T C ZBTB49 Silent p.S489S 0.10 TCGA-34-5241-01 4 46334650 46334650 A G GABRA2 Silent p.P79P 0.09 TCGA-34-5241-01 4 6303001 6303001 C T WFS1 Silent p.V493V 0.14 TCGA-34-5241-01 4 71275490 71275490 G T PROL1 Missense_Mutation p.A149S 0.24 tolerated_low_confidence(0.13) unknown(0) TCGA-34-5241-01 4 73164128 73164128 C A ADAMTS3 Missense_Mutation p.S819I 0.17 deleterious(0) possibly_damaging(0.845) TCGA-34-5241-01 5 1271250 1271250 C A TERT Missense_Mutation p.V818L 0.04 tolerated(1) benign(0.042) TCGA-34-5241-01 5 134782512 134782512 G A C5orf20 Missense_Mutation p.S96F 0.28 tolerated_low_confidence(0.16) possibly_damaging(0.683) TCGA-34-5241-01 5 140559224 140559224 C A PCDHB8 Missense_Mutation p.R537S 0.19 tolerated_low_confidence(0.09) benign(0.055) TCGA-34-5241-01 5 140589841 140589841 T G PCDHB12 Silent p.T454T 0.17 TCGA-34-5241-01 5 14287139 14287139 G A TRIO Silent p.R169R 0.06 TCGA-34-5241-01 5 14287164 14287164 G C TRIO Missense_Mutation p.E178Q 0.04 probably_damaging(0.985) TCGA-34-5241-01 5 24511591 24511591 G T CDH10 Missense_Mutation p.P283T 0.34 tolerated(0.05) benign(0.003) TCGA-34-5241-01 5 26916024 26916024 A T CDH9 Silent p.T79T 0.06 TCGA-34-5241-01 5 45303826 45303826 G C HCN1 Missense_Mutation p.P498R 0.05 deleterious(0) probably_damaging(1) TCGA-34-5241-01 5 7827073 7827073 G A ADCY2 3'UTR 0.37 TCGA-34-5241-01 6 117662769 117662769 T C ROS1 Missense_Mutation p.T1566A 0.24 tolerated(0.58) benign(0.004) TCGA-34-5241-01 6 118801613 118801613 T C CEP85L Silent p.K606K 0.18 TCGA-34-5241-01 6 133065521 133065521 C T VNN2 Missense_Mutation p.G494E 0.08 tolerated(0.21) benign(0.212) TCGA-34-5241-01 6 133769258 133769258 T A EYA4 Missense_Mutation p.M73K 0.25 tolerated_low_confidence(0.11) benign(0.359) TCGA-34-5241-01 6 150004993 150004993 A G LATS1 Missense_Mutation p.V411A 0.09 tolerated_low_confidence(0.45) benign(0.065) TCGA-34-5241-01 6 151152500 151152500 G A PLEKHG1 Silent p.P751P 0.10 TCGA-34-5241-01 6 155139623 155139623 C T SCAF8 Missense_Mutation p.P511L 0.25 deleterious(0) probably_damaging(1) TCGA-34-5241-01 6 26368421 26368421 C T BTN3A2 Missense_Mutation p.A4V 0.15 tolerated(0.29) probably_damaging(0.993) TCGA-34-5241-01 6 32015761 32015761 C A TNXB 5'Flank 0.14 TCGA-34-5241-01 6 39073225 39073225 G A SAYSD1 Missense_Mutation p.P179S 0.22 deleterious(0.02) unknown(0) TCGA-34-5241-01 6 55940311 55940311 C A COL21A1 Missense_Mutation p.G626V 0.33 deleterious(0) probably_damaging(0.998) TCGA-34-5241-01 6 78172785 78172785 G C HTR1B Silent p.T112T 0.08 TCGA-34-5241-01 6 88331092 88331092 C G ORC3 Missense_Mutation p.F336L 0.22 deleterious(0) probably_damaging(0.992) TCGA-34-5241-01 7 100349866 100349866 C A ZAN Missense_Mutation p.S713Y 0.30 possibly_damaging(0.781) TCGA-34-5241-01 7 107262407 107262407 G T BCAP29 3'UTR 0.24 TCGA-34-5241-01 7 135300789 135300789 G A NUP205 Missense_Mutation p.D1146N 0.21 deleterious(0) probably_damaging(0.955) TCGA-34-5241-01 7 51258650 51258650 G A COBL Silent p.H194H 0.10 TCGA-34-5241-01 7 62752544 62752544 G A ZNF733P RNA 0.08 TCGA-34-5241-01 7 71175847 71175847 G T WBSCR17 Silent p.R534R 0.08 TCGA-34-5241-01 7 82582018 82582018 T C PCLO Missense_Mutation p.T2751A 0.08 unknown(0) TCGA-34-5241-01 7 82582210 82582210 G C PCLO Missense_Mutation p.P2687A 0.08 unknown(0) TCGA-34-5241-01 7 87825791 87825791 G A ADAM22 Nonsense_Mutation p.W902* 0.06 TCGA-34-5241-01 8 139675984 139675984 C A COL22A1 Splice_Site p.X1051_splice 0.16 TCGA-34-5241-01 8 145693113 145693113 A G KIFC2 Missense_Mutation p.Q211R 0.19 tolerated(0.09) benign(0.028) TCGA-34-5241-01 8 22064921 22064921 G A BMP1 Missense_Mutation p.G823R 0.26 deleterious(0) probably_damaging(0.973) TCGA-34-5241-01 8 3019750 3019750 G C CSMD1 Missense_Mutation p.I1925M 0.17 possibly_damaging(0.888) TCGA-34-5241-01 8 63976782 63976782 C T TTPA Missense_Mutation p.E216K 0.06 deleterious(0) benign(0.249) TCGA-34-5241-01 8 87163743 87163743 T G ATP6V0D2 Missense_Mutation p.L289V 0.12 deleterious(0.01) probably_damaging(0.973) TCGA-34-5241-01 8 87163765 87163765 G T ATP6V0D2 Missense_Mutation p.R296L 0.14 tolerated(0.71) benign(0.004) TCGA-34-5241-01 8 87738766 87738766 G T CNGB3 Missense_Mutation p.P111T 0.18 tolerated(0.15) benign(0.004) TCGA-34-5241-01 8 88885990 88885990 T G DCAF4L2 Silent p.A70A 0.03 TCGA-34-5241-01 8 92972631 92972631 C A RUNX1T1 Nonsense_Mutation p.G563* 0.19 TCGA-34-5241-01 9 103066086 103066086 A C TEX10 Missense_Mutation p.L835R 0.15 tolerated(0.69) benign(0.001) TCGA-34-5241-01 9 103066087 103066087 G T TEX10 Missense_Mutation p.L835I 0.15 tolerated(0.49) benign(0.003) TCGA-34-5241-01 9 115818992 115818992 T C ZFP37 5'UTR 0.22 TCGA-34-5241-01 9 131493670 131493670 C A ZER1 Missense_Mutation p.K749N 0.23 tolerated(0.4) probably_damaging(0.915) TCGA-34-5241-01 9 19298057 19298057 C A DENND4C Missense_Mutation p.H348Q 0.26 deleterious(0) possibly_damaging(0.896) TCGA-34-5241-01 9 2056778 2056778 G C SMARCA2 Missense_Mutation p.R427P 0.32 possibly_damaging(0.453) TCGA-34-5241-01 9 5431932 5431932 G C PLGRKT Missense_Mutation p.Q16E 0.12 deleterious(0.03) possibly_damaging(0.761) TCGA-34-5241-01 9 78936351 78936351 G A PCSK5 Missense_Mutation p.E1273K 0.20 tolerated(0.34) benign(0.002) TCGA-34-5241-01 9 8331735 8331735 T C PTPRD Missense_Mutation p.D1794G 0.23 deleterious(0.01) probably_damaging(0.994) TCGA-34-5241-01 9 86554512 86554512 C T C9orf64 Missense_Mutation p.D314N 0.17 deleterious(0) probably_damaging(1) TCGA-34-5241-01 9 88287537 88287537 C A AGTPBP1 Missense_Mutation p.V166F 0.21 deleterious(0.01) possibly_damaging(0.887) TCGA-34-5241-01 X 102979902 102979902 C T GLRA4 Missense_Mutation p.M42I 0.20 tolerated(0.1) benign(0.103) TCGA-34-5241-01 X 128890485 128890485 C T XPNPEP2 Silent p.L441L 0.29 TCGA-34-5241-01 X 37545327 37545327 C G XK Missense_Mutation p.A38G 0.33 tolerated(1) benign(0.01) TCGA-34-5241-01 X 62570675 62570675 C T SPIN4 Silent p.P8P 0.07 TCGA-34-5241-01 X 65478817 65478817 A T HEPH Missense_Mutation p.Y1065F 0.50 tolerated(0.27) benign(0.12) TCGA-34-5241-01 X 70146802 70146802 C A SLC7A3 Missense_Mutation p.W459L 0.35 tolerated(0.19) benign(0.002) TCGA-34-5927-01 10 101590552 101590552 G A ABCC2 Missense_Mutation p.E943K 0.65 tolerated(0.57) benign(0.002) TCGA-34-5927-01 10 103988822 103988822 A G ELOVL3 Missense_Mutation p.Q209R 0.07 deleterious(0) probably_damaging(0.999) TCGA-34-5927-01 10 134012417 134012417 C T DPYSL4 Silent p.Y251Y 0.57 TCGA-34-5927-01 10 17107605 17107605 G T CUBN Missense_Mutation p.T1014K 0.36 deleterious(0.03) possibly_damaging(0.855) TCGA-34-5927-01 10 21120411 21120411 C T NEBL Missense_Mutation p.M517I 0.39 tolerated(0.9) benign(0.006) TCGA-34-5927-01 10 25887113 25887113 C A GPR158 Nonsense_Mutation p.S853* 0.32 TCGA-34-5927-01 10 43654346 43654346 C T CSGALNACT2 Missense_Mutation p.T282I 0.22 tolerated(0.44) possibly_damaging(0.549) TCGA-34-5927-01 10 48371120 48371120 C T ZNF488 Silent p.L196L 0.70 TCGA-34-5927-01 10 72289798 72289798 C T PALD1 Nonsense_Mutation p.Q148* 0.61 TCGA-34-5927-01 10 73326642 73326642 G T CDH23 Silent p.R191R 0.64 TCGA-34-5927-01 10 87487767 87487767 G A GRID1 Missense_Mutation p.P460S 0.64 deleterious(0.01) possibly_damaging(0.635) TCGA-34-5927-01 10 94409662 94409662 C G KIF11 Silent p.L947L 0.51 TCGA-34-5927-01 10 94410206 94410206 C G KIF11 Missense_Mutation p.L991V 0.61 tolerated(0.54) benign(0.002) TCGA-34-5927-01 11 105924321 105924321 T C KBTBD3 Silent p.S365S 0.54 TCGA-34-5927-01 11 109294504 109294504 C A C11orf87 Missense_Mutation p.Q49K 0.27 tolerated(0.11) probably_damaging(0.968) TCGA-34-5927-01 11 112104321 112104321 T C PTS 3'UTR 0.49 TCGA-34-5927-01 11 121058628 121058628 C T TECTA Silent p.F2029F 0.34 TCGA-34-5927-01 11 121175181 121175181 G C SC5D Missense_Mutation p.D108H 0.39 tolerated(0.16) benign(0.003) TCGA-34-5927-01 11 123756232 123756232 G A TMEM225 5'UTR 0.31 TCGA-34-5927-01 11 123909601 123909601 A G OR10G7 Silent p.T36T 0.21 TCGA-34-5927-01 11 130343465 130343465 G T ADAMTS15 Missense_Mutation p.G868C 0.54 deleterious(0) possibly_damaging(0.759) TCGA-34-5927-01 11 134093809 134093809 C A NCAPD3 Missense_Mutation p.L4F 0.09 tolerated_low_confidence(0.28) benign(0.312) TCGA-34-5927-01 11 15247298 15247298 A G INSC Missense_Mutation p.Q412R 0.51 tolerated(0.11) benign(0.067) TCGA-34-5927-01 11 30033036 30033036 G T KCNA4 Missense_Mutation p.A397E 0.46 tolerated(0.23) benign(0.425) TCGA-34-5927-01 11 30925146 30925146 A T DCDC1 Missense_Mutation p.L1465M 0.40 deleterious(0.04) possibly_damaging(0.82) TCGA-34-5927-01 11 3249621 3249621 G A MRGPRE Missense_Mutation p.R136C 0.46 deleterious(0) probably_damaging(0.957) TCGA-34-5927-01 11 32697138 32697138 T C CCDC73 Silent p.Q206Q 0.35 TCGA-34-5927-01 11 33566385 33566385 C A KIAA1549L Missense_Mutation p.P652Q 0.47 deleterious_low_confidence(0) possibly_damaging(0.653) TCGA-34-5927-01 11 40137244 40137244 C T LRRC4C Missense_Mutation p.R200K 0.28 tolerated(0.73) benign(0.007) TCGA-34-5927-01 11 44099414 44099414 G T ACCS Missense_Mutation p.R225L 0.34 tolerated(0.12) possibly_damaging(0.887) TCGA-34-5927-01 11 45970434 45970434 C G PHF21A Intron 0.34 TCGA-34-5927-01 11 48346889 48346889 G A OR4C3 Missense_Mutation p.G133R 0.11 deleterious(0.01) probably_damaging(0.988) TCGA-34-5927-01 11 5080587 5080587 G T OR52E2 Missense_Mutation p.L91I 0.47 tolerated(0.09) benign(0.135) TCGA-34-5927-01 11 5080588 5080588 G T OR52E2 Missense_Mutation p.N90K 0.47 tolerated(0.11) benign(0.01) TCGA-34-5927-01 11 5080785 5080785 G T OR52E2 Missense_Mutation p.L25I 0.37 tolerated(0.35) benign(0.011) TCGA-34-5927-01 11 55681934 55681934 T A OR5W2 Missense_Mutation p.N42I 0.33 deleterious(0) probably_damaging(0.996) TCGA-34-5927-01 11 55927561 55927561 C A OR8K5 Missense_Mutation p.C78F 0.36 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-34-5927-01 11 58972338 58972338 G C DTX4 Missense_Mutation p.A606P 0.27 deleterious(0) probably_damaging(0.966) TCGA-34-5927-01 11 59626613 59626613 A T TCN1 Silent p.I228I 0.33 TCGA-34-5927-01 11 6023926 6023926 G T OR56A4 Silent p.A151A 0.36 TCGA-34-5927-01 11 6048912 6048912 G T OR56A1 Missense_Mutation p.P8H 0.35 tolerated(0.68) benign(0.156) TCGA-34-5927-01 11 6048913 6048913 G T OR56A1 Missense_Mutation p.P8T 0.35 tolerated(0.81) benign(0.01) TCGA-34-5927-01 11 62744174 62744174 C T SLC22A6 3'UTR 0.50 TCGA-34-5927-01 11 62751953 62751953 G C SLC22A6 Missense_Mutation p.D70E 0.42 deleterious(0.02) benign(0.033) TCGA-34-5927-01 11 63999935 63999935 C A DNAJC4 Missense_Mutation p.L72M 0.29 deleterious(0) probably_damaging(1) TCGA-34-5927-01 11 65113462 65113462 C G DPF2 Missense_Mutation p.D279E 0.36 deleterious(0.03) probably_damaging(0.964) TCGA-34-5927-01 11 65124453 65124453 T C TIGD3 Missense_Mutation p.F392L 0.37 tolerated(0.2) benign(0.337) TCGA-34-5927-01 11 65838208 65838208 C T PACS1 Missense_Mutation p.S84F 0.23 deleterious_low_confidence(0) unknown(0) TCGA-34-5927-01 11 71166186 71166186 G T NADSYN1 Missense_Mutation p.R39I 0.35 tolerated(0.15) benign(0.392) TCGA-34-5927-01 11 86519529 86519529 T C PRSS23 Missense_Mutation p.Y282H 0.30 deleterious(0.04) probably_damaging(0.975) TCGA-34-5927-01 11 88300875 88300875 T - GRM5 Frame_Shift_Del p.Y659Sfs*5 0.29 TCGA-34-5927-01 11 9603115 9603115 G C WEE1 Missense_Mutation p.R393T 0.37 deleterious(0.02) possibly_damaging(0.907) TCGA-34-5927-01 12 101413845 101413845 C G ANO4 Missense_Mutation p.N221K 0.27 tolerated(0.09) benign(0.381) TCGA-34-5927-01 12 101442178 101442178 G C ANO4 Missense_Mutation p.W402C 0.33 deleterious(0) probably_damaging(1) TCGA-34-5927-01 12 102872304 102872304 A T IGF1 Intron 0.35 TCGA-34-5927-01 12 111348877 111348877 C T MYL2 3'UTR 0.38 TCGA-34-5927-01 12 124172644 124172644 G T TCTN2 Missense_Mutation p.A271S 0.27 tolerated(0.62) benign(0.048) TCGA-34-5927-01 12 131569199 131569199 C G GPR133 Silent p.V554V 0.38 TCGA-34-5927-01 12 133354336 133354336 G A GOLGA3 Missense_Mutation p.S1213F 0.40 tolerated(0.12) benign(0.381) TCGA-34-5927-01 12 22623838 22623838 A T C2CD5 Missense_Mutation p.V789D 0.37 deleterious(0) probably_damaging(0.922) TCGA-34-5927-01 12 39760235 39760235 C G KIF21A Missense_Mutation p.D274H 0.48 deleterious(0) probably_damaging(1) TCGA-34-5927-01 12 40734125 40734125 G T LRRK2 Missense_Mutation p.R1993L 0.26 deleterious(0) probably_damaging(1) TCGA-34-5927-01 12 40761645 40761645 G T LRRK2 3'UTR 0.44 TCGA-34-5927-01 12 43826243 43826243 C A ADAMTS20 Missense_Mutation p.R987M 0.34 deleterious(0) probably_damaging(0.978) TCGA-34-5927-01 12 49434903 49434903 C T KMT2D Missense_Mutation p.R2217H 0.51 benign(0.14) TCGA-34-5927-01 12 51121588 51121588 G C DIP2B Missense_Mutation p.G1168A 0.40 deleterious(0.01) probably_damaging(1) TCGA-34-5927-01 12 53663320 53663320 G T ESPL1 Silent p.A198A 0.35 TCGA-34-5927-01 12 53819263 53819263 G C AMHR2 Missense_Mutation p.R176T 0.30 tolerated(0.14) benign(0.227) TCGA-34-5927-01 12 62708619 62708619 C G USP15 Missense_Mutation p.L133V 0.37 tolerated(0.15) benign(0.14) TCGA-34-5927-01 12 80203635 80203635 T A PPP1R12A Silent p.A465A 0.27 TCGA-34-5927-01 12 80651772 80651772 G A OTOGL Missense_Mutation p.D618N 0.27 tolerated(0.06) probably_damaging(0.999) TCGA-34-5927-01 12 82824688 82824688 G T METTL25 Missense_Mutation p.K432N 0.40 tolerated(0.51) benign(0.004) TCGA-34-5927-01 12 8666243 8666243 C A CLEC4D 5'UTR 0.41 TCGA-34-5927-01 12 94543741 94543741 A T PLXNC1 Nonsense_Mutation p.R332* 0.32 TCGA-34-5927-01 13 102029054 102029054 G T NALCN Missense_Mutation p.P214Q 0.32 deleterious(0.04) possibly_damaging(0.467) TCGA-34-5927-01 13 113527896 113527896 G A ATP11A Missense_Mutation p.D1023N 0.38 deleterious(0.02) possibly_damaging(0.76) TCGA-34-5927-01 13 114112392 114112392 T C DCUN1D2 Silent p.V244V 0.40 TCGA-34-5927-01 13 20567346 20567346 G C ZMYM2 Missense_Mutation p.R45T 0.16 deleterious_low_confidence(0.02) benign(0.017) TCGA-34-5927-01 13 20567525 20567525 G C ZMYM2 Missense_Mutation p.E105Q 0.24 tolerated_low_confidence(0.08) benign(0.11) TCGA-34-5927-01 13 20567573 20567573 G T ZMYM2 Missense_Mutation p.D121Y 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-34-5927-01 13 20567803 20567803 G A ZMYM2 Silent p.V197V 0.27 TCGA-34-5927-01 13 20567851 20567851 G A ZMYM2 Missense_Mutation p.M213I 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.885) TCGA-34-5927-01 13 20568004 20568004 G T ZMYM2 Missense_Mutation p.M264I 0.22 tolerated(0.75) benign(0.003) TCGA-34-5927-01 13 20568028 20568028 G C ZMYM2 Missense_Mutation p.Q272H 0.22 deleterious(0) probably_damaging(0.997) TCGA-34-5927-01 13 53421590 53421590 C A PCDH8 Missense_Mutation p.D328Y 0.61 deleterious(0) probably_damaging(1) TCGA-34-5927-01 13 53421591 53421591 C A PCDH8 Missense_Mutation p.Q327H 0.62 tolerated(0.36) benign(0.096) TCGA-34-5927-01 14 106725471 106725471 C T IGHV3-23 Silent p.G27G 0.23 TCGA-34-5927-01 14 19574304 19574304 C A POTEG Missense_Mutation p.T454K 0.31 tolerated(0.8) benign(0.001) TCGA-34-5927-01 14 21990847 21990847 C T SALL2 Silent p.T1005T 0.56 TCGA-34-5927-01 14 58598408 58598408 C T C14orf37 Silent p.E551E 0.45 TCGA-34-5927-01 15 28465667 28465667 G A HERC2 Missense_Mutation p.L1926F 0.38 probably_damaging(0.993) TCGA-34-5927-01 15 33955780 33955780 C A RYR3 Missense_Mutation p.H1821N 0.28 possibly_damaging(0.782) TCGA-34-5927-01 15 50271902 50271902 C A ATP8B4 Nonsense_Mutation p.E316* 0.38 TCGA-34-5927-01 15 71404546 71404546 G T CT62 Missense_Mutation p.H26N 0.24 deleterious_low_confidence(0) benign(0.216) TCGA-34-5927-01 15 75012843 75012843 T A CYP1A1 Missense_Mutation p.Q509L 0.39 deleterious(0.02) benign(0.045) TCGA-34-5927-01 15 80872844 80872844 A G ARNT2 Missense_Mutation p.Q569R 0.36 tolerated(0.09) benign(0.128) TCGA-34-5927-01 15 83224681 83224681 G T CPEB1 Silent p.L266L 0.38 TCGA-34-5927-01 15 89398163 89398172 GCCTCAGAGG - ACAN Frame_Shift_Del p.A783Nfs*24 0.38 TCGA-34-5927-01 15 90897909 90897909 C A ZNF774 Nonsense_Mutation p.S6* 0.31 TCGA-34-5927-01 16 12142233 12142233 G A SNX29 Silent p.L168L 0.41 TCGA-34-5927-01 16 14014057 14014057 T C ERCC4 Missense_Mutation p.M12T 0.28 deleterious_low_confidence(0.01) benign(0.25) TCGA-34-5927-01 16 20442601 20442601 T A ACSM5 Silent p.R422R 0.32 TCGA-34-5927-01 16 20554474 20554474 A G ACSM2B Silent p.D464D 0.23 TCGA-34-5927-01 16 26147451 26147451 C T HS3ST4 Missense_Mutation p.P418L 0.07 deleterious(0.01) possibly_damaging(0.72) TCGA-34-5927-01 16 30724634 30724634 G C SRCAP Missense_Mutation p.D746H 0.16 unknown(0) TCGA-34-5927-01 16 70604043 70604043 G A SF3B3 Silent p.T1133T 0.57 TCGA-34-5927-01 17 18668086 18668086 C T FBXW10 Nonsense_Mutation p.R489* 0.04 TCGA-34-5927-01 17 33689942 33689942 G A SLFN11 Silent p.F295F 0.74 TCGA-34-5927-01 17 39394625 39394625 C A KRTAP9-8 Missense_Mutation p.P108T 0.67 deleterious(0.02) probably_damaging(0.999) TCGA-34-5927-01 17 45452306 45452306 C T EFCAB13 Missense_Mutation p.T449M 0.33 deleterious(0.04) benign(0.012) TCGA-34-5927-01 17 73566264 73566264 G A LLGL2 Missense_Mutation p.R601Q 0.33 tolerated(0.31) benign(0.102) TCGA-34-5927-01 17 7578382 7578382 G C TP53 Nonsense_Mutation p.S183* 0.68 TCGA-34-5927-01 18 13826449 13826449 C T MC5R Missense_Mutation p.R229W 0.41 tolerated(0.07) benign(0.001) TCGA-34-5927-01 18 31325999 31325999 A G ASXL3 Missense_Mutation p.T2063A 0.46 benign(0.017) TCGA-34-5927-01 18 46284319 46284319 A T CTIF Missense_Mutation p.K205M 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.904) TCGA-34-5927-01 18 60642823 60642823 A G PHLPP1 Missense_Mutation p.K1317E 0.35 tolerated(0.34) benign(0.038) TCGA-34-5927-01 18 72343774 72343774 A G ZNF407 Missense_Mutation p.T267A 0.34 deleterious(0) probably_damaging(0.996) TCGA-34-5927-01 18 74625758 74625758 C T ZNF236 Missense_Mutation p.R987W 0.36 deleterious(0) probably_damaging(1) TCGA-34-5927-01 19 1037867 1037868 CC - CNN2 Frame_Shift_Del p.P301Lfs*72 0.22 TCGA-34-5927-01 19 14676967 14676967 A G NDUFB7 Missense_Mutation p.V131A 0.34 deleterious_low_confidence(0.01) benign(0.012) TCGA-34-5927-01 19 14884813 14884813 G T EMR2 Missense_Mutation p.R46S 0.39 deleterious(0.03) benign(0.149) TCGA-34-5927-01 19 17759744 17759744 T C UNC13A Missense_Mutation p.S525G 0.24 deleterious(0.02) benign(0.062) TCGA-34-5927-01 19 18188455 18188455 C T IL12RB1 Silent p.E140E 0.27 TCGA-34-5927-01 19 18779702 18779702 G A KLHL26 Missense_Mutation p.V499M 0.35 tolerated(0.09) probably_damaging(0.971) TCGA-34-5927-01 19 20307846 20307846 G A ZNF486 Silent p.L109L 0.36 TCGA-34-5927-01 19 22155843 22155843 A T ZNF208 Missense_Mutation p.Y665N 0.27 deleterious(0) probably_damaging(0.997) TCGA-34-5927-01 19 23938269 23938269 T A ZNF681 Missense_Mutation p.R30W 0.39 deleterious(0) probably_damaging(0.963) TCGA-34-5927-01 19 24310244 24310244 A T ZNF254 Missense_Mutation p.K481M 0.40 deleterious(0.02) probably_damaging(0.984) TCGA-34-5927-01 19 33167314 33167314 G A RGS9BP Missense_Mutation p.E49K 0.20 tolerated(0.29) possibly_damaging(0.795) TCGA-34-5927-01 19 33417844 33417844 C A CEP89 Missense_Mutation p.W359L 0.32 deleterious(0.02) benign(0.023) TCGA-34-5927-01 19 33628589 33628589 T C WDR88 Missense_Mutation p.F95L 0.32 deleterious(0.05) benign(0.186) TCGA-34-5927-01 19 35804402 35804402 C T MAG 3'UTR 0.45 TCGA-34-5927-01 19 40006578 40006578 C G SELV Silent p.S242S 0.80 TCGA-34-5927-01 19 45924470 45924470 G A ERCC1 Missense_Mutation p.A96V 0.80 tolerated(0.09) benign(0.06) TCGA-34-5927-01 19 49558755 49558755 A C CGB7 5'UTR 0.50 TCGA-34-5927-01 19 51628948 51628948 G A SIGLEC9 Silent p.Q172Q 0.04 TCGA-34-5927-01 19 57175283 57175283 G T ZNF835 Missense_Mutation p.S428R 0.79 tolerated(0.09) possibly_damaging(0.548) TCGA-34-5927-01 1 103471438 103471438 C T COL11A1 Missense_Mutation p.G601R 0.37 unknown(0) TCGA-34-5927-01 1 109793500 109793500 C T CELSR2 Missense_Mutation p.P267S 0.32 deleterious(0.01) probably_damaging(0.934) TCGA-34-5927-01 1 120612030 120612030 C A NOTCH2 5'UTR 0.19 TCGA-34-5927-01 1 12785921 12785921 G A AADACL3 Missense_Mutation p.M337I 0.43 tolerated(0.42) benign(0) TCGA-34-5927-01 1 151023104 151023104 C T C1orf56 3'UTR 0.46 TCGA-34-5927-01 1 152383038 152383038 G A CRNN Nonsense_Mutation p.Q174* 0.38 TCGA-34-5927-01 1 152800058 152800058 G T LCE1A Missense_Mutation p.C37F 0.33 tolerated_low_confidence(0.52) unknown(0) TCGA-34-5927-01 1 153906318 153906318 G A DENND4B Missense_Mutation p.R991W 0.42 deleterious(0.01) possibly_damaging(0.53) TCGA-34-5927-01 1 155291733 155291733 G A RUSC1 Missense_Mutation p.G57S 0.35 tolerated_low_confidence(0.11) possibly_damaging(0.791) TCGA-34-5927-01 1 155823173 155823173 T C GON4L Silent p.K133K 0.04 TCGA-34-5927-01 1 157069063 157069063 G T ETV3L Missense_Mutation p.H56N 0.28 tolerated(0.22) benign(0.394) TCGA-34-5927-01 1 16069353 16069353 T C TMEM82 Silent p.L38L 0.42 TCGA-34-5927-01 1 176661335 176661335 G T PAPPA2 Missense_Mutation p.Q835H 0.34 deleterious(0) probably_damaging(0.998) TCGA-34-5927-01 1 18152812 18152812 G C ACTL8 Missense_Mutation p.G300A 0.38 deleterious(0) probably_damaging(1) TCGA-34-5927-01 1 18691941 18691941 C T IGSF21 Silent p.N255N 0.32 TCGA-34-5927-01 1 190195367 190195367 C G BRINP3 Missense_Mutation p.G269A 0.24 deleterious(0.02) probably_damaging(0.997) TCGA-34-5927-01 1 197091418 197091418 C A ASPM Missense_Mutation p.E1204D 0.35 tolerated(0.47) benign(0.049) TCGA-34-5927-01 1 197298001 197298002 TG - CRB1 Frame_Shift_Del p.V175Pfs*14 0.23 TCGA-34-5927-01 1 202092290 202092290 T A GPR37L1 Missense_Mutation p.Y67N 0.58 tolerated(0.19) benign(0.445) TCGA-34-5927-01 1 203743235 203743235 C G LAX1 Missense_Mutation p.S208C 0.32 deleterious(0.03) possibly_damaging(0.865) TCGA-34-5927-01 1 209936905 209936905 G A TRAF3IP3 Silent p.L225L 0.42 TCGA-34-5927-01 1 21031387 21031387 G A KIF17 Missense_Mutation p.R226W 0.41 tolerated(0.05) benign(0.013) TCGA-34-5927-01 1 223567028 223567028 C G C1orf65 Missense_Mutation p.R71G 0.41 tolerated(0.07) possibly_damaging(0.79) TCGA-34-5927-01 1 236881198 236881198 G A ACTN2 Missense_Mutation p.G56D 0.05 tolerated(0.05) possibly_damaging(0.834) TCGA-34-5927-01 1 240255893 240255893 G T FMN2 Missense_Mutation p.D162Y 0.33 unknown(0) TCGA-34-5927-01 1 248402703 248402703 T C OR2M4 Missense_Mutation p.I158T 0.37 deleterious(0.02) possibly_damaging(0.461) TCGA-34-5927-01 1 248525386 248525386 G T OR2T4 Missense_Mutation p.M168I 0.33 deleterious(0.01) benign(0.071) TCGA-34-5927-01 1 25944517 25944517 G C MAN1C1 Missense_Mutation p.E77Q 0.35 tolerated(0.37) benign(0.009) TCGA-34-5927-01 1 40775613 40775613 G A COL9A2 Silent p.D281D 0.42 TCGA-34-5927-01 1 43232697 43232697 T C LEPRE1 5'Flank 0.50 TCGA-34-5927-01 1 44169289 44169289 G C KDM4A Missense_Mutation p.S948T 0.03 deleterious(0.01) benign(0.055) TCGA-34-5927-01 1 44878026 44878026 G T RNF220 Missense_Mutation p.R86L 0.33 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-34-5927-01 1 53925124 53925124 C T DMRTB1 5'UTR 0.31 TCGA-34-5927-01 1 55529216 55529216 C G PCSK9 Missense_Mutation p.R680G 0.29 deleterious(0) probably_damaging(0.955) TCGA-34-5927-01 1 60314155 60314155 A T HOOK1 Silent p.A366A 0.32 TCGA-34-5927-01 1 9781535 9781535 G A PIK3CD Silent p.L615L 0.29 TCGA-34-5927-01 20 18296189 18296189 C A ZNF133 Missense_Mutation p.H231N 0.45 tolerated(0.26) possibly_damaging(0.902) TCGA-34-5927-01 20 18395156 18395156 G T DZANK1 Missense_Mutation p.L360I 0.59 tolerated(0.42) benign(0.064) TCGA-34-5927-01 20 25655620 25655620 A G ZNF337 3'UTR 0.30 TCGA-34-5927-01 20 29628259 29628259 C T FRG1B Silent p.C87C 0.05 TCGA-34-5927-01 20 49224934 49224934 C T FAM65C Silent p.V312V 0.27 TCGA-34-5927-01 20 57480498 57480498 C T GNAS Missense_Mutation p.R808C 0.07 deleterious(0) probably_damaging(0.999) TCGA-34-5927-01 20 9404577 9404577 A G PLCB4 Silent p.T822T 0.29 TCGA-34-5927-01 21 34923873 34923873 G C SON Missense_Mutation p.S779T 0.07 benign(0.153) TCGA-34-5927-01 21 45513965 45513965 G T TRAPPC10 Missense_Mutation p.V1007L 0.12 tolerated(0.25) benign(0.011) TCGA-34-5927-01 22 22890661 22890661 C A PRAME Missense_Mutation p.G453V 0.38 deleterious(0) probably_damaging(0.997) TCGA-34-5927-01 22 26688413 26688413 C A SEZ6L Missense_Mutation p.L46I 0.44 tolerated_low_confidence(0.31) benign(0.03) TCGA-34-5927-01 22 28192792 28192792 G A MN1 Missense_Mutation p.P1247L 0.41 possibly_damaging(0.798) TCGA-34-5927-01 22 36054912 36054912 G A APOL6 Missense_Mutation p.A101T 0.35 tolerated(0.22) benign(0.304) TCGA-34-5927-01 22 43023325 43023325 C A CYB5R3 Silent p.L239L 0.24 TCGA-34-5927-01 22 43716031 43716031 A - SCUBE1 Frame_Shift_Del p.C87Wfs*78 0.25 TCGA-34-5927-01 22 47069654 47069654 A T GRAMD4 Nonsense_Mutation p.K443* 0.38 TCGA-34-5927-01 22 50957764 50957764 G T NCAPH2 Intron 0.23 TCGA-34-5927-01 2 100209739 100209739 T C AFF3 Missense_Mutation p.K820R 0.38 tolerated(0.15) benign(0.085) TCGA-34-5927-01 2 103318900 103318900 C G SLC9A2 Missense_Mutation p.S595C 0.32 deleterious(0) benign(0.371) TCGA-34-5927-01 2 131519750 131519750 C A AMER3 Silent p.G35G 0.56 TCGA-34-5927-01 2 14774494 14774494 C G FAM84A Missense_Mutation p.L131V 0.73 tolerated(0.53) probably_damaging(0.987) TCGA-34-5927-01 2 163044862 163044862 G T FAP Missense_Mutation p.P544H 0.49 deleterious(0) probably_damaging(1) TCGA-34-5927-01 2 170044654 170044654 C A LRP2 Missense_Mutation p.D3052Y 0.41 probably_damaging(1) TCGA-34-5927-01 2 179400049 179400049 C T TTN Missense_Mutation p.E33765K 0.36 TCGA-34-5927-01 2 179418006 179418006 C G TTN Missense_Mutation p.R29874T 0.37 TCGA-34-5927-01 2 186672270 186672270 A G FSIP2 Silent p.E6168E 0.03 TCGA-34-5927-01 2 189975051 189975051 T C COL5A2 Missense_Mutation p.I74M 0.39 probably_damaging(0.991) TCGA-34-5927-01 2 206041301 206041301 G C PARD3B Missense_Mutation p.G580R 0.19 tolerated(0.3) benign(0.015) TCGA-34-5927-01 2 210642034 210642034 C A UNC80 Missense_Mutation p.H117Q 0.31 possibly_damaging(0.838) TCGA-34-5927-01 2 21232182 21232182 G A APOB Nonsense_Mutation p.R2520* 0.34 TCGA-34-5927-01 2 219143279 219143279 G C TMBIM1 Missense_Mutation p.F144L 0.45 deleterious(0.04) possibly_damaging(0.521) TCGA-34-5927-01 2 219609911 219609911 C T TTLL4 Missense_Mutation p.P581S 0.34 tolerated(0.05) benign(0.443) TCGA-34-5927-01 2 220501117 220501117 T C SLC4A3 Missense_Mutation p.L789P 0.47 deleterious(0) probably_damaging(1) TCGA-34-5927-01 2 232374028 232374028 C A LINC00471 RNA 0.41 TCGA-34-5927-01 2 242371150 242371150 G A FARP2 Silent p.K276K 0.41 TCGA-34-5927-01 2 27799780 27799780 A - C2orf16 Frame_Shift_Del p.I115Sfs*7 0.40 TCGA-34-5927-01 2 42871302 42871302 A G MTA3 Silent p.S139S 0.32 TCGA-34-5927-01 2 68621263 68621263 C T PLEK Missense_Mutation p.H291Y 0.34 tolerated(0.35) benign(0.025) TCGA-34-5927-01 2 68621303 68621303 C T PLEK Missense_Mutation p.S304L 0.33 deleterious(0.04) benign(0.063) TCGA-34-5927-01 2 69271902 69271902 T C ANTXR1 Missense_Mutation p.F85L 0.28 deleterious(0) probably_damaging(0.969) TCGA-34-5927-01 2 86361473 86361473 C A PTCD3 Silent p.L534L 0.28 TCGA-34-5927-01 2 9531254 9531254 G C ASAP2 Missense_Mutation p.S816T 0.05 tolerated(0.68) benign(0.015) TCGA-34-5927-01 3 114070355 114070355 C T ZBTB20 Silent p.T190T 0.23 TCGA-34-5927-01 3 119534661 119534662 - C NR1I2 Frame_Shift_Ins p.Q422Pfs*5 0.17 TCGA-34-5927-01 3 124132413 124132413 C - KALRN Frame_Shift_Del p.R813Afs*7 0.26 TCGA-34-5927-01 3 129137108 129137108 C T EFCAB12 Missense_Mutation p.A224T 0.57 tolerated(0.15) benign(0.056) TCGA-34-5927-01 3 134851892 134851892 G C EPHB1 Splice_Site p.X433_splice 0.26 TCGA-34-5927-01 3 134881015 134881015 G T EPHB1 Silent p.L526L 0.27 TCGA-34-5927-01 3 142241604 142241604 C A ATR Missense_Mutation p.S1411I 0.26 tolerated(0.09) benign(0.017) TCGA-34-5927-01 3 152058184 152058184 T C TMEM14E 3'UTR 0.34 TCGA-34-5927-01 3 164906519 164906519 G A SLITRK3 Silent p.G700G 0.35 TCGA-34-5927-01 3 168807873 168807873 T C MECOM Missense_Mutation p.T983A 0.21 tolerated(0.46) benign(0.001) TCGA-34-5927-01 3 168807874 168807874 C A MECOM Silent p.V982V 0.22 TCGA-34-5927-01 3 184100484 184100484 C A CHRD Missense_Mutation p.L302M 0.56 tolerated(1) probably_damaging(0.958) TCGA-34-5927-01 3 42916392 42916392 C T CYP8B1 Missense_Mutation p.R306Q 0.55 tolerated(0.32) benign(0.003) TCGA-34-5927-01 3 46399319 46399319 T C CCR2 Missense_Mutation p.S101P 0.39 deleterious(0.02) possibly_damaging(0.699) TCGA-34-5927-01 3 46724759 46724759 C A ALS2CL Missense_Mutation p.D324Y 0.61 deleterious(0) possibly_damaging(0.874) TCGA-34-5927-01 3 47142990 47142990 G A SETD2 Missense_Mutation p.S1658L 0.56 deleterious(0.01) benign(0.285) TCGA-34-5927-01 3 48895967 48895967 C T SLC25A20 Silent p.V272V 0.61 TCGA-34-5927-01 3 65365050 65365050 C T MAGI1 Missense_Mutation p.V961M 0.68 deleterious(0.04) possibly_damaging(0.496) TCGA-34-5927-01 3 95374167 95374167 G T MTHFD2P1 RNA 0.47 TCGA-34-5927-01 3 97611834 97611834 G A CRYBG3 Missense_Mutation p.G576E 0.30 deleterious(0) probably_damaging(1) TCGA-34-5927-01 3 98002463 98002463 C A OR5H2 Silent p.S244S 0.26 TCGA-34-5927-01 3 98240031 98240031 G A CLDND1 Missense_Mutation p.R103W 0.28 deleterious(0.05) benign(0.086) TCGA-34-5927-01 4 106156934 106156935 - T TET2 Frame_Shift_Ins p.G613Wfs*25 0.33 TCGA-34-5927-01 4 109002749 109002749 T C LEF1 Missense_Mutation p.M239V 0.73 deleterious(0.03) benign(0.001) TCGA-34-5927-01 4 113351678 113351678 G A ALPK1 Silent p.L325L 0.65 TCGA-34-5927-01 4 113565913 113565913 C T LARP7 Nonsense_Mutation p.R37* 0.05 TCGA-34-5927-01 4 119979008 119979008 G T SYNPO2 Missense_Mutation p.M1235I 0.53 tolerated(0.14) benign(0.067) TCGA-34-5927-01 4 121616416 121616416 A T PRDM5 Silent p.A581A 0.64 TCGA-34-5927-01 4 151773702 151773702 T C LRBA Missense_Mutation p.I1054V 0.62 tolerated_low_confidence(0.32) benign(0) TCGA-34-5927-01 4 183713537 183713537 C A TENM3 Silent p.T1904T 0.69 TCGA-34-5927-01 4 36135012 36135012 C T ARAP2 Splice_Site p.X1088_splice 0.68 TCGA-34-5927-01 4 46737236 46737236 T A COX7B2 5'UTR 0.53 TCGA-34-5927-01 4 55958788 55958788 C G KDR Missense_Mutation p.R1022P 0.44 deleterious(0) probably_damaging(1) TCGA-34-5927-01 4 85530642 85530642 G A CDS1 Silent p.L102L 0.63 TCGA-34-5927-01 4 99393613 99393613 C T TSPAN5 3'UTR 0.57 TCGA-34-5927-01 5 140182847 140182847 C A PCDHA3 Missense_Mutation p.P689T 0.73 tolerated_low_confidence(0.12) benign(0.012) TCGA-34-5927-01 5 140208462 140208462 C T PCDHA6 Silent p.I262I 0.12 TCGA-34-5927-01 5 142680225 142680225 C A NR3C1 Silent p.T525T 0.53 TCGA-34-5927-01 5 176696631 176696631 C T NSD1 Nonsense_Mutation p.R1778* 0.75 TCGA-34-5927-01 5 67588979 67588980 - ACGAG PIK3R1 Frame_Shift_Ins p.A360Efs*15 0.47 TCGA-34-5927-01 6 137187869 137187869 G C PEX7 Missense_Mutation p.E211Q 0.21 tolerated(0.92) benign(0.05) TCGA-34-5927-01 6 165829708 165829708 G C PDE10A Missense_Mutation p.P354A 0.67 tolerated(0.17) probably_damaging(0.997) TCGA-34-5927-01 6 166918039 166918039 T A RPS6KA2 Missense_Mutation p.H182L 0.79 deleterious(0) probably_damaging(0.973) TCGA-34-5927-01 6 166918040 166918040 G T RPS6KA2 Missense_Mutation p.H182N 0.79 deleterious(0.01) possibly_damaging(0.877) TCGA-34-5927-01 6 28200375 28200375 C T ZSCAN9 Silent p.L253L 0.33 TCGA-34-5927-01 6 31541240 31541240 T C LTA Missense_Mutation p.Y130H 0.79 tolerated(0.06) probably_damaging(0.988) TCGA-34-5927-01 6 32261554 32261554 C A C6orf10 Missense_Mutation p.G299V 0.74 tolerated(0.22) possibly_damaging(0.789) TCGA-34-5927-01 6 70909315 70909315 G A COL19A1 Missense_Mutation p.R1033K 0.71 tolerated(0.41) benign(0.223) TCGA-34-5927-01 6 96054135 96054135 G C MANEA Missense_Mutation p.V415L 0.71 deleterious(0.01) benign(0.315) TCGA-34-5927-01 7 106897209 106897209 C T COG5 Missense_Mutation p.A604T 0.28 tolerated(0.48) benign(0.012) TCGA-34-5927-01 7 107542181 107542181 A G DLD Splice_Site p.X40_splice 0.31 TCGA-34-5927-01 7 117864854 117864854 G A ANKRD7 5'UTR 0.45 TCGA-34-5927-01 7 122338572 122338572 C G RNF133 Missense_Mutation p.G134A 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-34-5927-01 7 128496897 128496897 C A FLNC Missense_Mutation p.R2495S 0.28 deleterious(0.04) probably_damaging(0.992) TCGA-34-5927-01 7 130038517 130038517 C T CEP41 3'UTR 0.40 TCGA-34-5927-01 7 130040572 130040572 C T CEP41 Missense_Mutation p.E245K 0.35 deleterious(0) possibly_damaging(0.905) TCGA-34-5927-01 7 131870117 131870117 G C PLXNA4 Silent p.V1033V 0.35 TCGA-34-5927-01 7 137773401 137773401 C A AKR1D1 Silent p.R50R 0.36 TCGA-34-5927-01 7 141805746 141805746 T A MGAM 3'UTR 0.29 TCGA-34-5927-01 7 150069034 150069034 C A REPIN1 Missense_Mutation p.P292H 0.36 deleterious(0) probably_damaging(0.999) TCGA-34-5927-01 7 21939723 21939723 G A DNAH11 Missense_Mutation p.G4437R 0.32 probably_damaging(1) TCGA-34-5927-01 7 31009500 31009500 G T GHRHR Missense_Mutation p.C96F 0.40 deleterious(0) probably_damaging(1) TCGA-34-5927-01 7 38289084 38289084 G A TRGC2 Missense_Mutation p.L31F 0.33 deleterious(0.01) probably_damaging(0.952) TCGA-34-5927-01 7 38725441 38725441 C A FAM183B Missense_Mutation p.W55C 0.29 deleterious(0.02) probably_damaging(0.991) TCGA-34-5927-01 7 6031654 6031654 T C PMS2 Missense_Mutation p.Y313C 0.26 deleterious(0.01) probably_damaging(0.989) TCGA-34-5927-01 7 6431584 6431584 T G RAC1 Missense_Mutation p.V46G 0.28 deleterious(0) probably_damaging(1) TCGA-34-5927-01 7 6639817 6639817 G T C7orf26 Missense_Mutation p.R313L 0.26 deleterious(0.02) benign(0.433) TCGA-34-5927-01 7 73811475 73811475 G T CLIP2 Missense_Mutation p.S931I 0.35 deleterious(0.02) possibly_damaging(0.602) TCGA-34-5927-01 7 88965368 88965368 C G ZNF804B Missense_Mutation p.N1024K 0.32 tolerated(0.11) benign(0.018) TCGA-34-5927-01 7 92760528 92760528 T C SAMD9L 3'UTR 0.37 TCGA-34-5927-01 7 93067382 93067382 G A CALCR Missense_Mutation p.A341V 0.39 tolerated(0.14) benign(0.02) TCGA-34-5927-01 7 94049586 94049586 T A COL1A2 Silent p.P707P 0.39 TCGA-34-5927-01 7 99367429 99367429 C T CYP3A4 Silent p.R161R 0.32 TCGA-34-5927-01 8 101146192 101146192 C G FBXO43 Missense_Mutation p.R655S 0.40 deleterious(0.01) probably_damaging(0.926) TCGA-34-5927-01 8 101245659 101245659 T G SPAG1 Missense_Mutation p.L670R 0.45 deleterious(0) probably_damaging(0.998) TCGA-34-5927-01 8 101281076 101281076 A C RNF19A Silent p.A376A 0.32 TCGA-34-5927-01 8 103662514 103662514 G A KLF10 Missense_Mutation p.A430V 0.32 deleterious(0.02) benign(0.31) TCGA-34-5927-01 8 109001416 109001416 C G RSPO2 Missense_Mutation p.G51R 0.44 deleterious(0) probably_damaging(1) TCGA-34-5927-01 8 113326189 113326189 G T CSMD3 Missense_Mutation p.Q2548K 0.33 tolerated(0.06) benign(0.024) TCGA-34-5927-01 8 114326923 114326923 C T CSMD3 Nonsense_Mutation p.W93* 0.41 TCGA-34-5927-01 8 130861552 130861552 A G FAM49B Silent p.G259G 0.28 TCGA-34-5927-01 8 139180146 139180146 G A FAM135B Missense_Mutation p.P417L 0.41 deleterious(0.01) probably_damaging(0.996) TCGA-34-5927-01 8 144943648 144943648 G C EPPK1 Silent p.A1258A 0.35 TCGA-34-5927-01 8 16012606 16012606 C G MSR1 Missense_Mutation p.E289Q 0.53 tolerated(0.27) benign(0.05) TCGA-34-5927-01 8 1828220 1828220 C G ARHGEF10 Missense_Mutation p.H284D 0.36 tolerated(0.12) possibly_damaging(0.476) TCGA-34-5927-01 8 32505416 32505416 G A NRG1 Intron 0.09 TCGA-34-5927-01 8 48719804 48719804 G T PRKDC Missense_Mutation p.P3213H 0.32 benign(0.001) TCGA-34-5927-01 8 86193528 86193528 C T CA13 Missense_Mutation p.R247C 0.38 deleterious(0) probably_damaging(1) TCGA-34-5927-01 8 98973728 98973728 G A MATN2 Missense_Mutation p.A310T 0.42 tolerated(0.77) benign(0.002) TCGA-34-5927-01 8 99248401 99248401 T A NIPAL2 Nonsense_Mutation p.R140* 0.35 TCGA-34-5927-01 9 134025771 134025771 C T NUP214 Missense_Mutation p.P701S 0.68 benign(0.014) TCGA-34-5927-01 9 15192599 15192599 C A TTC39B Missense_Mutation p.A307S 0.74 tolerated(0.19) benign(0.401) TCGA-34-5927-01 9 43624958 43624958 G A SPATA31A6 Silent p.P1243P 0.18 TCGA-34-5927-01 9 5070053 5070053 G T JAK2 Splice_Site p.X547_splice 0.09 TCGA-34-5927-01 9 95481276 95481276 G A BICD2 Missense_Mutation p.R551C 0.69 deleterious(0) probably_damaging(0.996) TCGA-34-5927-01 X 100510221 100510221 G T DRP2 Missense_Mutation p.L743F 0.39 tolerated(0.7) benign(0.015) TCGA-34-5927-01 X 100613622 100613622 C G BTK Silent p.V319V 0.05 TCGA-34-5927-01 X 102317851 102317851 G T BEX1 Missense_Mutation p.H118N 0.42 deleterious(0.03) benign(0.12) TCGA-34-5927-01 X 105179165 105179165 A G NRK Missense_Mutation p.Y1169C 0.35 tolerated(0.05) probably_damaging(0.997) TCGA-34-5927-01 X 115304242 115304242 C T AGTR2 Missense_Mutation p.H237Y 0.36 tolerated(0.06) benign(0.376) TCGA-34-5927-01 X 117527019 117527019 C G WDR44 Missense_Mutation p.A204G 0.25 tolerated_low_confidence(0.11) benign(0) TCGA-34-5927-01 X 117731508 117731508 C T DOCK11 Missense_Mutation p.S793L 0.40 tolerated(0.23) benign(0.005) TCGA-34-5927-01 X 123034478 123034478 C T XIAP Missense_Mutation p.A412V 0.29 deleterious(0.03) benign(0.06) TCGA-34-5927-01 X 123197734 123197734 G T STAG2 Missense_Mutation p.V620L 0.39 deleterious(0.04) benign(0.273) TCGA-34-5927-01 X 123516596 123516596 G T TENM1 Missense_Mutation p.P2455H 0.36 tolerated(0.11) probably_damaging(0.995) TCGA-34-5927-01 X 135326828 135326828 G T MAP7D3 Missense_Mutation p.A127E 0.24 deleterious(0) probably_damaging(0.994) TCGA-34-5927-01 X 136649893 136649893 A G ZIC3 Missense_Mutation p.H348R 0.34 deleterious(0.01) benign(0.277) TCGA-34-5927-01 X 151935707 151935707 C - MAGEA3 Frame_Shift_Del p.A154Lfs*13 0.26 TCGA-34-5927-01 X 153209819 153209819 G T RENBP Missense_Mutation p.Q27K 0.27 tolerated(0.55) benign(0.001) TCGA-34-5927-01 X 153296299 153296299 G T MECP2 Missense_Mutation p.T339N 0.35 tolerated(0.18) possibly_damaging(0.629) TCGA-34-5927-01 X 153297676 153297676 T C MECP2 Missense_Mutation p.Y132C 0.30 deleterious(0) probably_damaging(0.982) TCGA-34-5927-01 X 153716116 153716116 C A SLC10A3 Silent p.V388V 0.35 TCGA-34-5927-01 X 1720006 1720006 G T AKAP17A Missense_Mutation p.G536V 0.45 deleterious_low_confidence(0.05) unknown(0) TCGA-34-5927-01 X 55650591 55650591 C A FOXR2 Silent p.P149P 0.55 TCGA-34-5927-01 X 63412728 63412728 C A AMER1 Missense_Mutation p.V147L 0.32 tolerated(0.46) benign(0.014) TCGA-34-5927-01 X 65409596 65409596 C A HEPH Missense_Mutation p.H347Q 0.40 deleterious(0) probably_damaging(0.976) TCGA-34-5927-01 X 67283739 67283739 G A OPHN1 Silent p.H705H 0.32 TCGA-34-5927-01 X 70468981 70468981 G C ZMYM3 Silent p.T503T 0.29 TCGA-34-5927-01 X 89177498 89177498 C A TGIF2LX Silent p.T138T 0.31 TCGA-34-5927-01 X 99931008 99931008 C G SYTL4 3'UTR 0.29 TCGA-34-5928-01 10 104590510 104590510 C G CYP17A1 Missense_Mutation p.K492N 0.48 tolerated(0.31) probably_damaging(0.971) TCGA-34-5928-01 10 112270047 112270047 G T DUSP5 Missense_Mutation p.G340C 0.43 deleterious(0.01) benign(0.214) TCGA-34-5928-01 10 118203982 118203982 G A PNLIPRP3 Missense_Mutation p.R138H 0.59 deleterious(0.02) probably_damaging(0.998) TCGA-34-5928-01 10 118364922 118364922 C G PNLIPRP1 Silent p.T399T 0.51 TCGA-34-5928-01 10 127789652 127789652 C T ADAM12 Silent p.A303A 0.52 TCGA-34-5928-01 10 15688934 15688934 T A ITGA8 Missense_Mutation p.D373V 0.25 tolerated(0.27) possibly_damaging(0.739) TCGA-34-5928-01 10 18250593 18250593 T A SLC39A12 Silent p.S115S 0.31 TCGA-34-5928-01 10 3162113 3162113 C T PFKP Silent p.A520A 0.23 TCGA-34-5928-01 10 3176761 3176761 G C PFKP Missense_Mutation p.E703D 0.04 tolerated(0.15) benign(0.001) TCGA-34-5928-01 10 37442554 37442554 C A ANKRD30A Missense_Mutation p.Q532K 0.14 tolerated(0.41) benign(0.292) TCGA-34-5928-01 10 50916721 50916721 C A C10orf53 3'UTR 0.08 TCGA-34-5928-01 10 55582959 55582959 A T PCDH15 Silent p.S1511S 0.52 TCGA-34-5928-01 10 64573229 64573229 C G EGR2 Missense_Mutation p.R390P 0.12 deleterious(0) probably_damaging(0.96) TCGA-34-5928-01 10 75675040 75675040 G C PLAU Missense_Mutation p.M334I 0.52 tolerated(0.11) possibly_damaging(0.661) TCGA-34-5928-01 10 7830204 7830204 G C ATP5C1 Missense_Mutation p.A12P 0.33 tolerated(0.14) benign(0.01) TCGA-34-5928-01 10 96098477 96098477 T C NOC3L Missense_Mutation p.D660G 0.50 deleterious(0.01) probably_damaging(0.988) TCGA-34-5928-01 11 102207664 102207664 G A BIRC3 Missense_Mutation p.R549Q 0.34 deleterious(0) probably_damaging(0.986) TCGA-34-5928-01 11 1088759 1088759 G C MUC2 Missense_Mutation p.V1182L 0.47 possibly_damaging(0.729) TCGA-34-5928-01 11 114568963 114568963 C G NXPE2 Missense_Mutation p.T110R 0.43 tolerated(0.12) benign(0.089) TCGA-34-5928-01 11 115099956 115099956 T A CADM1 Missense_Mutation p.T200S 0.34 deleterious(0) possibly_damaging(0.795) TCGA-34-5928-01 11 124135522 124135522 A C OR8G5 Missense_Mutation p.E267A 0.31 deleterious(0.04) benign(0.031) TCGA-34-5928-01 11 124267208 124267208 G A OR8B3 Missense_Mutation p.L14F 0.29 deleterious_low_confidence(0.02) benign(0.009) TCGA-34-5928-01 11 17464794 17464794 G T ABCC8 Silent p.V466V 0.36 TCGA-34-5928-01 11 22291958 22291958 C G ANO5 Missense_Mutation p.L667V 0.29 deleterious(0.05) possibly_damaging(0.665) TCGA-34-5928-01 11 27402514 27402514 C G LGR4 Splice_Site p.X253_splice 0.11 TCGA-34-5928-01 11 33763558 33763558 C G FBXO3 Missense_Mutation p.D438H 0.41 tolerated_low_confidence(0.23) unknown(0) TCGA-34-5928-01 11 3430077 3430077 C T TSSC2 RNA 0.37 TCGA-34-5928-01 11 34378571 34378571 A T ABTB2 Missense_Mutation p.M187K 0.35 deleterious(0) benign(0.329) TCGA-34-5928-01 11 47297746 47297746 A G MADD Missense_Mutation p.E319G 0.29 deleterious(0) probably_damaging(1) TCGA-34-5928-01 11 48267494 48267494 C T OR4X2 Missense_Mutation p.S280F 0.17 deleterious(0) probably_damaging(0.982) TCGA-34-5928-01 11 55703185 55703185 C T OR5I1 Missense_Mutation p.R231H 0.14 tolerated(0.37) benign(0.005) TCGA-34-5928-01 11 55945005 55945005 C A OR5J2 Silent p.A304A 0.24 TCGA-34-5928-01 11 57506183 57506183 T C TMX2 Silent p.F163F 0.36 TCGA-34-5928-01 11 57982687 57982687 C T OR1S1 Silent p.L157L 0.03 TCGA-34-5928-01 11 58920951 58920951 G C FAM111A Missense_Mutation p.E604Q 0.09 deleterious(0.01) probably_damaging(0.985) TCGA-34-5928-01 11 59271475 59271475 G C OR4D11 Missense_Mutation p.A143P 0.39 tolerated(0.11) possibly_damaging(0.908) TCGA-34-5928-01 11 59945733 59945733 C A MS4A6A Missense_Mutation p.L141F 0.09 tolerated(0.16) probably_damaging(0.984) TCGA-34-5928-01 11 61110288 61110288 C G DAK Missense_Mutation p.I279M 0.05 deleterious(0) probably_damaging(0.925) TCGA-34-5928-01 11 63676724 63676724 C T MARK2 3'UTR 0.15 TCGA-34-5928-01 11 6413084 6413084 G C SMPD1 Missense_Mutation p.L263F 0.10 tolerated(0.14) benign(0.399) TCGA-34-5928-01 11 64670836 64670836 T C ATG2A Missense_Mutation p.D1179G 0.11 deleterious(0.02) probably_damaging(0.994) TCGA-34-5928-01 11 65618269 65618269 G C SNX32 Silent p.L182L 0.09 TCGA-34-5928-01 11 66626556 66626556 C T LRFN4 Silent p.L447L 0.08 TCGA-34-5928-01 11 69063147 69063147 G T MYEOV Missense_Mutation p.R77L 0.19 deleterious_low_confidence(0) possibly_damaging(0.858) TCGA-34-5928-01 11 71293270 71293270 C A KRTAP5-11 3'UTR 0.47 TCGA-34-5928-01 11 72409030 72409030 C G ARAP1 Missense_Mutation p.G888A 0.31 deleterious(0.03) benign(0.048) TCGA-34-5928-01 11 82880471 82880471 G C PCF11 Missense_Mutation p.E1032Q 0.35 tolerated(0.15) benign(0.345) TCGA-34-5928-01 11 86518672 86518672 G T PRSS23 Splice_Site 0.37 TCGA-34-5928-01 12 112247365 112247365 C G ALDH2 Missense_Mutation p.Q514E 0.42 tolerated(0.19) benign(0.003) TCGA-34-5928-01 12 113346551 113346551 G C OAS1 Missense_Mutation p.A131P 0.41 tolerated(0.1) possibly_damaging(0.892) TCGA-34-5928-01 12 113544952 113544952 G C RASAL1 Nonsense_Mutation p.S537* 0.05 TCGA-34-5928-01 12 11546403 11546403 T G PRB2 Silent p.G203G 0.26 TCGA-34-5928-01 12 13768424 13768424 C G GRIN2B Intron 0.10 TCGA-34-5928-01 12 19489488 19489488 T A PLEKHA5 Missense_Mutation p.Y830N 0.29 tolerated(0.32) benign(0.394) TCGA-34-5928-01 12 2676922 2676922 C G CACNA1C Silent p.L619L 0.09 TCGA-34-5928-01 12 42866338 42866338 C G PRICKLE1 5'UTR 0.06 TCGA-34-5928-01 12 48528749 48528749 C G PFKM Silent p.L328L 0.37 TCGA-34-5928-01 12 49427912 49427912 C T KMT2D Missense_Mutation p.D3560N 0.11 probably_damaging(0.98) TCGA-34-5928-01 12 52680957 52680957 C G KRT81 Silent p.V392V 0.04 TCGA-34-5928-01 12 54379211 54379211 G T HOXC10 Missense_Mutation p.R56S 0.44 deleterious(0) benign(0.021) TCGA-34-5928-01 12 54903687 54903687 G T NCKAP1L Missense_Mutation p.G218V 0.42 tolerated(0.29) benign(0.139) TCGA-34-5928-01 12 54903688 54903688 G T NCKAP1L Silent p.G218G 0.42 TCGA-34-5928-01 12 54964134 54964134 G T PDE1B Missense_Mutation p.R196L 0.38 deleterious(0) benign(0.001) TCGA-34-5928-01 12 55356572 55356572 C T TESPA1 Silent p.Q370Q 0.07 TCGA-34-5928-01 12 6696654 6696654 C G CHD4 Missense_Mutation p.D1259H 0.06 deleterious(0.01) benign(0.045) TCGA-34-5928-01 12 78225318 78225318 T A NAV3 Missense_Mutation p.I26K 0.43 deleterious_low_confidence(0) benign(0.35) TCGA-34-5928-01 12 78594313 78594313 A C NAV3 Missense_Mutation p.D2237A 0.38 deleterious(0) probably_damaging(0.999) TCGA-34-5928-01 12 7890059 7890060 - C CLEC4C Frame_Shift_Ins p.A116Gfs*2 0.10 TCGA-34-5928-01 12 8203146 8203146 C T FOXJ2 Silent p.P522P 0.40 TCGA-34-5928-01 12 91552164 91552164 G A DCN Silent p.P149P 0.42 TCGA-34-5928-01 12 94620959 94620959 G C PLXNC1 Missense_Mutation p.G643A 0.04 tolerated(0.28) benign(0.018) TCGA-34-5928-01 12 94691141 94691141 G A PLXNC1 Missense_Mutation p.R1339Q 0.37 tolerated(0.17) benign(0.34) TCGA-34-5928-01 13 114541067 114541067 G C GAS6 Silent p.L188L 0.12 TCGA-34-5928-01 13 26129135 26129135 G A ATP8A2 Missense_Mutation p.D398N 0.04 deleterious(0) probably_damaging(0.975) TCGA-34-5928-01 13 70514251 70514251 G A KLHL1 Missense_Mutation p.S312F 0.28 deleterious(0) probably_damaging(0.987) TCGA-34-5928-01 14 102498739 102498739 C T DYNC1H1 Silent p.I3338I 0.37 TCGA-34-5928-01 14 19988210 19988210 C A POTEM 3'UTR 0.15 TCGA-34-5928-01 14 20216323 20216323 C G OR4Q3 Missense_Mutation p.T246R 0.36 deleterious(0) possibly_damaging(0.762) TCGA-34-5928-01 14 22446940 22446940 G T TRAV8-6 Missense_Mutation p.A8S 0.36 tolerated(0.09) benign(0.041) TCGA-34-5928-01 14 50074710 50074710 G A LRR1 Missense_Mutation p.R292K 0.05 tolerated(1) benign(0.001) TCGA-34-5928-01 14 55408302 55408302 T C WDHD1 Missense_Mutation p.K1099R 0.35 tolerated(0.19) benign(0.003) TCGA-34-5928-01 14 66209111 66209111 C G FUT8 Missense_Mutation p.P571A 0.06 deleterious(0.04) benign(0.011) TCGA-34-5928-01 15 29400588 29400588 G C APBA2 Missense_Mutation p.G678A 0.30 deleterious(0.01) possibly_damaging(0.886) TCGA-34-5928-01 15 34135745 34135745 C A RYR3 Missense_Mutation p.F4422L 0.58 possibly_damaging(0.541) TCGA-34-5928-01 15 40498506 40498506 C G BUB1B Missense_Mutation p.S619C 0.12 deleterious(0) probably_damaging(0.977) TCGA-34-5928-01 15 40498627 40498627 C T BUB1B Silent p.I659I 0.10 TCGA-34-5928-01 15 40594805 40594805 C G PLCB2 Missense_Mutation p.Q79H 0.07 tolerated(0.12) possibly_damaging(0.832) TCGA-34-5928-01 15 42005472 42005472 C A MGA Missense_Mutation p.H1070N 0.11 deleterious(0) probably_damaging(0.999) TCGA-34-5928-01 15 42201981 42201981 G C EHD4 Missense_Mutation p.I335M 0.07 deleterious(0) possibly_damaging(0.486) TCGA-34-5928-01 15 53081346 53081346 C A ONECUT1 Missense_Mutation p.G246C 0.44 deleterious(0.01) probably_damaging(0.981) TCGA-34-5928-01 15 66828295 66828295 G A ZWILCH Missense_Mutation p.D456N 0.09 deleterious(0.04) probably_damaging(0.999) TCGA-34-5928-01 15 69677078 69677078 C A PAQR5 Missense_Mutation p.S81Y 0.06 tolerated(0.3) probably_damaging(0.999) TCGA-34-5928-01 15 71124721 71124721 C T LARP6 Nonsense_Mutation p.W382* 0.09 TCGA-34-5928-01 15 90999476 90999476 G T IQGAP1 Nonsense_Mutation p.E569* 0.15 TCGA-34-5928-01 15 91428389 91428389 C G FES Silent p.V38V 0.08 TCGA-34-5928-01 16 20492206 20492206 C T ACSM2A Missense_Mutation p.T491M 0.41 deleterious(0) probably_damaging(0.972) TCGA-34-5928-01 16 2647199 2647199 G C PDPK1 Missense_Mutation p.V493L 0.05 tolerated(0.07) benign(0.248) TCGA-34-5928-01 16 27856301 27856301 G C GSG1L Missense_Mutation p.P211R 0.50 deleterious(0) probably_damaging(0.987) TCGA-34-5928-01 16 29888751 29888751 C T SEZ6L2 Missense_Mutation p.D584N 0.21 deleterious(0) probably_damaging(0.969) TCGA-34-5928-01 16 31142607 31142607 G C KAT8 3'UTR 0.58 TCGA-34-5928-01 16 51171035 51171035 G T SALL1 Silent p.I1321I 0.38 TCGA-34-5928-01 16 61854866 61854866 A G CDH8 Silent p.D329D 0.48 TCGA-34-5928-01 16 67694088 67694088 C T ACD Nonsense_Mutation p.W98* 0.19 TCGA-34-5928-01 16 68225270 68225270 G A NFATC3 Missense_Mutation p.D900N 0.04 tolerated_low_confidence(0.39) benign(0.003) TCGA-34-5928-01 16 69170611 69170611 C G CIRH1A Missense_Mutation p.H58D 0.05 tolerated(0.9) benign(0.002) TCGA-34-5928-01 16 76574669 76574669 G C CNTNAP4 Missense_Mutation p.V1069L 0.38 tolerated(0.07) benign(0.2) TCGA-34-5928-01 16 81134720 81134720 C A GCSH 5'Flank 0.21 TCGA-34-5928-01 16 82197736 82197736 T C MPHOSPH6 Missense_Mutation p.I39V 0.34 tolerated(0.13) benign(0.098) TCGA-34-5928-01 16 87451175 87451175 G A ZCCHC14 Missense_Mutation p.S288F 0.30 deleterious(0.03) probably_damaging(0.944) TCGA-34-5928-01 16 89345518 89345518 G T ANKRD11 Missense_Mutation p.L2478M 0.28 probably_damaging(0.999) TCGA-34-5928-01 16 9856979 9856979 T A GRIN2A 3'UTR 0.39 TCGA-34-5928-01 17 1946404 1946404 C G DPH1 3'UTR 0.05 TCGA-34-5928-01 17 20224583 20224583 G A AC004702.2 Intron 0.40 TCGA-34-5928-01 17 26861480 26861480 C G FOXN1 Missense_Mutation p.I353M 0.40 deleterious(0) probably_damaging(0.992) TCGA-34-5928-01 17 26967585 26967585 G A KIAA0100 Nonsense_Mutation p.Q295* 0.46 TCGA-34-5928-01 17 29548922 29548922 C G NF1 Missense_Mutation p.P566A 0.07 tolerated(0.07) probably_damaging(0.98) TCGA-34-5928-01 17 40725081 40725081 G C MLX 3'UTR 0.11 TCGA-34-5928-01 17 41879119 41879119 C G MPP3 Missense_Mutation p.E570Q 0.11 tolerated(0.67) possibly_damaging(0.878) TCGA-34-5928-01 17 42271946 42271946 A G ATXN7L3 Silent p.S285S 0.34 TCGA-34-5928-01 17 43246350 43246350 G C HEXIM2 Intron 0.05 TCGA-34-5928-01 17 43246634 43246634 G C HEXIM2 Missense_Mutation p.E107Q 0.06 tolerated(0.08) probably_damaging(0.999) TCGA-34-5928-01 17 46474081 46474081 C T SKAP1 Missense_Mutation p.R38K 0.26 tolerated(0.22) benign(0.119) TCGA-34-5928-01 17 61561865 61561865 G C ACE Missense_Mutation p.W628C 0.15 deleterious(0) probably_damaging(0.994) TCGA-34-5928-01 17 64092382 64092382 A G CEP112 Missense_Mutation p.I252T 0.36 tolerated(0.21) benign(0.001) TCGA-34-5928-01 17 66511538 66511538 A G PRKAR1A 5'UTR 0.24 TCGA-34-5928-01 17 71228242 71228242 G A FAM104A Silent p.S68S 0.52 TCGA-34-5928-01 17 7577153 7577153 C A TP53 Missense_Mutation p.G262V 0.58 deleterious(0) probably_damaging(0.994) TCGA-34-5928-01 17 8741176 8741176 C T PIK3R6 Missense_Mutation p.D68N 0.14 tolerated(0.11) possibly_damaging(0.9) TCGA-34-5928-01 18 22057058 22057058 G T HRH4 Missense_Mutation p.R235S 0.22 tolerated(0.16) benign(0.015) TCGA-34-5928-01 18 34378345 34378345 T C TPGS2 Intron 0.20 TCGA-34-5928-01 18 54424078 54424078 G C WDR7 Missense_Mutation p.E752Q 0.17 tolerated(0.12) probably_damaging(0.997) TCGA-34-5928-01 18 55368444 55368444 C T ATP8B1 Intron 0.34 TCGA-34-5928-01 18 61160277 61160277 G A SERPINB5 Missense_Mutation p.M172I 0.21 tolerated(0.32) possibly_damaging(0.467) TCGA-34-5928-01 18 61600392 61600392 C T SERPINB10 Silent p.L248L 0.06 TCGA-34-5928-01 18 65180604 65180604 G A DSEL Silent p.N424N 0.35 TCGA-34-5928-01 18 77895799 77895799 G T ADNP2 Missense_Mutation p.G835W 0.32 deleterious(0) probably_damaging(1) TCGA-34-5928-01 19 10465286 10465286 C G TYK2 Splice_Site p.X873_splice 0.13 TCGA-34-5928-01 19 12298398 12298398 A G ZNF136 Missense_Mutation p.H402R 0.36 tolerated(0.49) benign(0.41) TCGA-34-5928-01 19 24310330 24310330 A G ZNF254 Missense_Mutation p.I510V 0.40 tolerated(0.43) benign(0.011) TCGA-34-5928-01 19 32844195 32844195 G C ZNF507 Silent p.V153V 0.07 TCGA-34-5928-01 19 33586724 33586724 G C GPATCH1 Missense_Mutation p.E204Q 0.05 tolerated(0.07) benign(0.053) TCGA-34-5928-01 19 34263690 34263690 C T CHST8 Missense_Mutation p.R333W 0.54 deleterious(0) probably_damaging(0.99) TCGA-34-5928-01 19 36113809 36113809 G C HAUS5 Missense_Mutation p.E606Q 0.09 tolerated(0.39) possibly_damaging(0.517) TCGA-34-5928-01 19 3633507 3633507 C G PIP5K1C Missense_Mutation p.E644D 0.12 tolerated_low_confidence(0.71) benign(0.001) TCGA-34-5928-01 19 41063031 41063031 G A SPTBN4 Missense_Mutation p.G1798S 0.64 deleterious(0) probably_damaging(0.96) TCGA-34-5928-01 19 41594860 41594860 C T CYP2A13 Silent p.F69F 0.05 TCGA-34-5928-01 19 47422627 47422627 C A ARHGAP35 Missense_Mutation p.S232Y 0.10 tolerated(0.08) probably_damaging(0.998) TCGA-34-5928-01 19 47425500 47425500 G C ARHGAP35 Missense_Mutation p.E1190Q 0.05 tolerated(0.26) benign(0.019) TCGA-34-5928-01 19 48018127 48018127 G C NAPA Missense_Mutation p.S24W 0.51 deleterious(0.03) probably_damaging(0.999) TCGA-34-5928-01 19 48204587 48204587 G T GLTSCR1 Nonsense_Mutation p.E1200* 0.39 TCGA-34-5928-01 19 50185235 50185235 C T PRMT1 Silent p.F87F 0.07 TCGA-34-5928-01 19 53995764 53995764 A G ZNF813 3'UTR 0.74 TCGA-34-5928-01 19 55450707 55450707 C T NLRP7 Missense_Mutation p.A494T 0.55 tolerated(0.62) benign(0.018) TCGA-34-5928-01 19 56156399 56156399 C G ZNF581 Missense_Mutation p.F154L 0.04 deleterious(0) probably_damaging(0.968) TCGA-34-5928-01 19 58437712 58437712 G T ZNF418 Missense_Mutation p.H613N 0.19 deleterious(0) possibly_damaging(0.758) TCGA-34-5928-01 1 102270254 102270254 C T OLFM3 Missense_Mutation p.R306Q 0.09 deleterious(0.02) probably_damaging(0.994) TCGA-34-5928-01 1 10386247 10386247 C T KIF1B Silent p.S872S 0.18 TCGA-34-5928-01 1 109394332 109394332 G A AKNAD1 Nonsense_Mutation p.Q319* 0.14 TCGA-34-5928-01 1 113189874 113189874 G T CAPZA1 Nonsense_Mutation p.E28* 0.28 TCGA-34-5928-01 1 120510147 120510147 C G NOTCH2 Missense_Mutation p.E454D 0.19 deleterious(0.02) benign(0.057) TCGA-34-5928-01 1 150478153 150478153 C T TARS2 Silent p.A660A 0.20 TCGA-34-5928-01 1 155180394 155180394 G C MTX1 Missense_Mutation p.K218N 0.04 tolerated(0.08) possibly_damaging(0.875) TCGA-34-5928-01 1 155348296 155348296 G C ASH1L Nonsense_Mutation p.S2074* 0.04 TCGA-34-5928-01 1 157738268 157738268 A T FCRL2 Nonsense_Mutation p.Y273* 0.17 TCGA-34-5928-01 1 160385679 160385679 C T VANGL2 Missense_Mutation p.R18C 0.09 deleterious(0.04) unknown(0) TCGA-34-5928-01 1 160523878 160523878 A G CD84 Silent p.C149C 0.40 TCGA-34-5928-01 1 167847723 167847723 G C ADCY10 Missense_Mutation p.S456C 0.10 tolerated(0.11) benign(0.005) TCGA-34-5928-01 1 169497285 169497285 G C F5 Missense_Mutation p.Q1823E 0.04 tolerated(0.22) benign(0.312) TCGA-34-5928-01 1 17085016 17085016 G A MST1L RNA 0.05 TCGA-34-5928-01 1 171178238 171178238 T G FMO2 3'UTR 0.24 TCGA-34-5928-01 1 171178239 171178239 T C FMO2 3'UTR 0.24 TCGA-34-5928-01 1 176640118 176640118 T C PAPPA2 Silent p.S668S 0.34 TCGA-34-5928-01 1 181003145 181003147 TGG - MR1 Translation_Start_Site p.MG1_?2 0.39 TCGA-34-5928-01 1 200955982 200955982 G A KIF21B Nonsense_Mutation p.Q1227* 0.17 TCGA-34-5928-01 1 202934595 202934595 C G CYB5R1 Missense_Mutation p.E127Q 0.03 tolerated(0.06) possibly_damaging(0.521) TCGA-34-5928-01 1 203025937 203025937 C A PPFIA4 Missense_Mutation p.P250T 0.38 tolerated(0.14) benign(0.258) TCGA-34-5928-01 1 216074151 216074151 G A USH2A Missense_Mutation p.S2466F 0.09 possibly_damaging(0.77) TCGA-34-5928-01 1 216680224 216680224 T C ESRRG 3'UTR 0.24 TCGA-34-5928-01 1 218578578 218578578 G A TGFB2 Silent p.E166E 0.05 TCGA-34-5928-01 1 220791715 220791715 G A MARK1 Missense_Mutation p.E206K 0.04 deleterious(0) probably_damaging(0.997) TCGA-34-5928-01 1 223176858 223176858 G A DISP1 Missense_Mutation p.E707K 0.11 deleterious(0.03) possibly_damaging(0.906) TCGA-34-5928-01 1 225686076 225686076 T A ENAH Missense_Mutation p.T571S 0.05 tolerated(0.67) benign(0.349) TCGA-34-5928-01 1 226827342 226827342 C T ITPKB Silent p.V823V 0.05 TCGA-34-5928-01 1 228594100 228594100 C T TRIM11 Missense_Mutation p.E55K 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-34-5928-01 1 228645093 228645093 C T HIST3H2A 3'UTR 0.08 TCGA-34-5928-01 1 229568576 229568576 G A ACTA1 Nonsense_Mutation p.Q61* 0.09 TCGA-34-5928-01 1 237890482 237890482 C T RYR2 Silent p.P3607P 0.47 TCGA-34-5928-01 1 247492815 247492815 C G ZNF496 Missense_Mutation p.R22S 0.06 deleterious_low_confidence(0) possibly_damaging(0.548) TCGA-34-5928-01 1 248366573 248366573 C T OR2M3 Silent p.L68L 0.25 TCGA-34-5928-01 1 248436832 248436832 A G OR2T33 Silent p.C95C 0.06 TCGA-34-5928-01 1 248550988 248550988 T C OR2T6 Missense_Mutation p.F27L 0.47 tolerated(1) benign(0.001) TCGA-34-5928-01 1 28476843 28476843 C T PTAFR Silent p.A230A 0.16 TCGA-34-5928-01 1 38158662 38158662 G T CDCA8 Silent p.R60R 0.37 TCGA-34-5928-01 1 39798692 39798692 G A MACF1 Intron 0.11 TCGA-34-5928-01 1 39888172 39888172 G C MACF1 Missense_Mutation p.E3253Q 0.19 benign(0.417) TCGA-34-5928-01 1 45292729 45292729 C G PTCH2 Missense_Mutation p.R847T 0.25 tolerated(0.34) benign(0) TCGA-34-5928-01 1 45293550 45293550 G A PTCH2 Nonsense_Mutation p.Q675* 0.14 TCGA-34-5928-01 1 46874151 46874151 C G FAAH Silent p.P324P 0.04 TCGA-34-5928-01 1 59247717 59247717 C T JUN 3'UTR 0.06 TCGA-34-5928-01 1 75608891 75608891 G C LHX8 Missense_Mutation p.A160P 0.31 deleterious(0) probably_damaging(0.987) TCGA-34-5928-01 1 79119954 79119954 G A IFI44 Missense_Mutation p.G162R 0.25 tolerated(0.56) benign(0.104) TCGA-34-5928-01 1 90179549 90179549 C T LRRC8C Silent p.L474L 0.08 TCGA-34-5928-01 1 9416114 9416114 C T SPSB1 Missense_Mutation p.S55L 0.20 deleterious(0) probably_damaging(0.928) TCGA-34-5928-01 1 94528861 94528861 C A ABCA4 Missense_Mutation p.D523Y 0.11 deleterious(0) probably_damaging(0.992) TCGA-34-5928-01 1 94528862 94528862 C T ABCA4 Silent p.L522L 0.11 TCGA-34-5928-01 1 949562 949562 G A ISG15 Missense_Mutation p.G68S 0.44 tolerated(0.14) benign(0.383) TCGA-34-5928-01 20 1961213 1961213 C T PDYN Missense_Mutation p.R174H 0.24 tolerated(0.06) probably_damaging(0.999) TCGA-34-5928-01 20 31598853 31598853 C T BPIFB2 Missense_Mutation p.L45F 0.13 tolerated(0.17) possibly_damaging(0.741) TCGA-34-5928-01 20 40080608 40080608 C T CHD6 Silent p.E1127E 0.05 TCGA-34-5928-01 20 40713386 40713386 G A PTPRT Nonsense_Mutation p.R1358* 0.18 TCGA-34-5928-01 20 43034759 43034759 G C HNF4A Silent p.L59L 0.20 TCGA-34-5928-01 20 44505750 44505750 G A ZSWIM3 Missense_Mutation p.D185N 0.03 tolerated(0.07) benign(0.057) TCGA-34-5928-01 20 45905101 45905101 G T ZMYND8 Missense_Mutation p.F479L 0.08 deleterious_low_confidence(0.04) benign(0.003) TCGA-34-5928-01 20 46307536 46307536 G A SULF2 Silent p.I359I 0.07 TCGA-34-5928-01 20 48524804 48524804 C A SPATA2 Missense_Mutation p.R75L 0.27 deleterious(0) benign(0.256) TCGA-34-5928-01 20 50071200 50071200 G A NFATC2 Silent p.P578P 0.26 TCGA-34-5928-01 20 55967819 55967819 G A RBM38 Missense_Mutation p.R116Q 0.11 deleterious(0.01) possibly_damaging(0.466) TCGA-34-5928-01 20 56186895 56186895 G A ZBP1 Silent p.I254I 0.25 TCGA-34-5928-01 20 57599884 57599884 C G TUBB1 3'UTR 0.27 TCGA-34-5928-01 20 62571824 62571824 C T UCKL1 Silent p.R439R 0.26 TCGA-34-5928-01 20 76774 76774 G A DEFB125 Missense_Mutation p.E63K 0.09 tolerated(0.31) possibly_damaging(0.636) TCGA-34-5928-01 21 31709364 31709364 C T KRTAP27-1 Silent p.%3D 0.12 TCGA-34-5928-01 21 34029363 34029363 T C SYNJ1 Silent p.P882P 0.24 TCGA-34-5928-01 21 34892833 34892833 G A GART Nonsense_Mutation p.Q514* 0.16 TCGA-34-5928-01 22 22569377 22569377 G A IGLV10-54 Silent p.L23L 0.58 TCGA-34-5928-01 22 31484020 31484020 G A SMTN Missense_Mutation p.E41K 0.12 deleterious(0) probably_damaging(0.998) TCGA-34-5928-01 22 31524234 31524234 A G INPP5J Missense_Mutation p.K277R 0.12 tolerated(0.57) benign(0.007) TCGA-34-5928-01 22 31867895 31867895 G C EIF4ENIF1 Silent p.L35L 0.37 TCGA-34-5928-01 22 40662452 40662452 C T TNRC6B Nonsense_Mutation p.Q740* 0.06 TCGA-34-5928-01 22 50581585 50581585 C T MOV10L1 Missense_Mutation p.P765S 0.34 deleterious(0) probably_damaging(0.996) TCGA-34-5928-01 2 105473021 105473021 C A POU3F3 Nonsense_Mutation p.Y351* 0.39 TCGA-34-5928-01 2 105915078 105915078 G A TGFBRAP1 Missense_Mutation p.P258L 0.08 deleterious(0) probably_damaging(0.994) TCGA-34-5928-01 2 108921111 108921111 C A SULT1C2 Missense_Mutation p.P164T 0.19 deleterious(0) possibly_damaging(0.859) TCGA-34-5928-01 2 109380371 109380371 C T RANBP2 Missense_Mutation p.R1126W 0.14 deleterious(0) benign(0.378) TCGA-34-5928-01 2 109383184 109383184 C G RANBP2 Silent p.L2063L 0.30 TCGA-34-5928-01 2 136873426 136873426 C T CXCR4 Missense_Mutation p.M28I 0.27 tolerated(0.42) benign(0) TCGA-34-5928-01 2 141032120 141032120 C A LRP1B Missense_Mutation p.D4339Y 0.15 benign(0.065) TCGA-34-5928-01 2 141272243 141272243 C G LRP1B Missense_Mutation p.D2750H 0.29 probably_damaging(0.961) TCGA-34-5928-01 2 152544034 152544034 T A NEB Nonsense_Mutation p.K846* 0.05 TCGA-34-5928-01 2 152544035 152544035 C T NEB Silent p.K845K 0.06 TCGA-34-5928-01 2 172398276 172398276 G C CYBRD1 Silent p.L125L 0.14 TCGA-34-5928-01 2 178936577 178936577 C T PDE11A Silent p.L196L 0.25 TCGA-34-5928-01 2 179425922 179425922 C G TTN Missense_Mutation p.E28313Q 0.11 TCGA-34-5928-01 2 179477509 179477509 C G TTN Missense_Mutation p.E16647Q 0.20 TCGA-34-5928-01 2 179591986 179591986 G T TTN Missense_Mutation p.F6702L 0.31 TCGA-34-5928-01 2 179604792 179604792 C G TTN Missense_Mutation p.E4390Q 0.30 TCGA-34-5928-01 2 189922123 189922123 C T COL5A2 Missense_Mutation p.D754N 0.06 unknown(0) TCGA-34-5928-01 2 190569858 190569858 G A ANKAR Silent p.P606P 0.32 TCGA-34-5928-01 2 201846388 201846388 G A FAM126B Nonsense_Mutation p.R400* 0.11 TCGA-34-5928-01 2 202611303 202611303 G C ALS2 Missense_Mutation p.L662V 0.15 deleterious(0.03) benign(0.014) TCGA-34-5928-01 2 207412171 207412171 C A ADAM23 Missense_Mutation p.H247N 0.07 deleterious(0) benign(0.328) TCGA-34-5928-01 2 208986547 208986547 G T CRYGD Missense_Mutation p.N125K 0.25 tolerated(0.18) possibly_damaging(0.725) TCGA-34-5928-01 2 210545504 210545504 C G MAP2 Missense_Mutation p.S136C 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-34-5928-01 2 218925093 218925093 G C CXCR2P1 RNA 0.06 TCGA-34-5928-01 2 220162692 220162692 C T PTPRN Missense_Mutation p.R601Q 0.25 deleterious(0.02) possibly_damaging(0.873) TCGA-34-5928-01 2 224862912 224862912 C T SERPINE2 Missense_Mutation p.C148Y 0.12 deleterious(0.01) probably_damaging(0.987) TCGA-34-5928-01 2 225422481 225422481 A C CUL3 Missense_Mutation p.S53R 0.12 deleterious(0) probably_damaging(0.955) TCGA-34-5928-01 2 228886480 228886480 A T SPHKAP Missense_Mutation p.L215H 0.23 deleterious(0) probably_damaging(0.997) TCGA-34-5928-01 2 238486673 238486673 G A RAB17 Missense_Mutation p.L95F 0.09 deleterious(0) probably_damaging(0.971) TCGA-34-5928-01 2 239237975 239237975 G A TRAF3IP1 Missense_Mutation p.E303K 0.06 tolerated(0.13) possibly_damaging(0.625) TCGA-34-5928-01 2 240968926 240968926 C A OR6B2 Missense_Mutation p.L307F 0.25 tolerated(0.74) benign(0.006) TCGA-34-5928-01 2 24480961 24480961 C T ITSN2 Missense_Mutation p.G895E 0.52 deleterious(0) unknown(0) TCGA-34-5928-01 2 25141765 25141765 C G ADCY3 Missense_Mutation p.G31A 0.56 tolerated_low_confidence(0.54) benign(0.005) TCGA-34-5928-01 2 27015048 27015048 G C CENPA Missense_Mutation p.E50D 0.05 deleterious(0) possibly_damaging(0.815) TCGA-34-5928-01 2 27481676 27481676 C A SLC30A3 Missense_Mutation p.R74S 0.27 deleterious(0.03) benign(0.036) TCGA-34-5928-01 2 27657418 27657418 G C NRBP1 Missense_Mutation p.M172I 0.09 tolerated(0.07) benign(0.066) TCGA-34-5928-01 2 32449811 32449811 G A NLRC4 Silent p.L936L 0.19 TCGA-34-5928-01 2 32734914 32734914 G T BIRC6 Missense_Mutation p.A3364S 0.24 possibly_damaging(0.477) TCGA-34-5928-01 2 37002179 37002179 C G VIT Missense_Mutation p.F257L 0.10 tolerated(0.12) benign(0.085) TCGA-34-5928-01 2 44428720 44428720 G C PPM1B Missense_Mutation p.D128H 0.07 deleterious(0) probably_damaging(0.99) TCGA-34-5928-01 2 55490959 55490959 T A MTIF2 Silent p.L12L 0.18 TCGA-34-5928-01 2 61297594 61297594 G A KIAA1841 Missense_Mutation p.E37K 0.21 deleterious(0.02) benign(0.417) TCGA-34-5928-01 2 64113547 64113547 G C UGP2 Missense_Mutation p.D316H 0.03 deleterious(0) possibly_damaging(0.899) TCGA-34-5928-01 2 71305464 71305464 G A NAGK Silent p.L333L 0.15 TCGA-34-5928-01 2 73115537 73115537 C T SPR Silent p.C133C 0.35 TCGA-34-5928-01 2 73829327 73829327 C G ALMS1 Missense_Mutation p.H4043D 0.20 probably_damaging(0.999) TCGA-34-5928-01 2 74901714 74901714 G T SEMA4F Silent p.R304R 0.49 TCGA-34-5928-01 2 77746836 77746836 T G LRRTM4 Silent p.A53A 0.53 TCGA-34-5928-01 2 79312344 79312344 A T REG1B Nonstop_Mutation p.*167Kext*16 0.17 TCGA-34-5928-01 2 79385464 79385464 A G REG3A Silent p.H107H 0.47 TCGA-34-5928-01 2 80816495 80816495 C G CTNNA2 Missense_Mutation p.Q692E 0.17 tolerated(1) benign(0.002) TCGA-34-5928-01 2 85554352 85554352 G A TGOLN2 Missense_Mutation p.S168L 0.18 deleterious(0.05) probably_damaging(0.943) TCGA-34-5928-01 2 86090519 86090519 T A ST3GAL5 Nonsense_Mutation p.R58* 0.34 TCGA-34-5928-01 3 10320103 10320103 G C TATDN2 Missense_Mutation p.R701T 0.03 deleterious(0) probably_damaging(0.984) TCGA-34-5928-01 3 112349095 112349095 C G CCDC80 Missense_Mutation p.E634Q 0.09 deleterious(0.05) probably_damaging(0.987) TCGA-34-5928-01 3 113847578 113847578 C G DRD3 Missense_Mutation p.K396N 0.30 deleterious(0.02) probably_damaging(0.984) TCGA-34-5928-01 3 119222385 119222385 G C TIMMDC1 Missense_Mutation p.A123P 0.31 deleterious(0) probably_damaging(0.994) TCGA-34-5928-01 3 121339399 121339399 G C FBXO40 5'UTR 0.22 TCGA-34-5928-01 3 12192811 12192811 C T TIMP4 3'Flank 0.37 TCGA-34-5928-01 3 124385400 124385400 C T KALRN Silent p.L241L 0.15 TCGA-34-5928-01 3 130682866 130682866 G A ATP2C1 Silent p.T351T 0.08 TCGA-34-5928-01 3 142408474 142408474 G A PLS1 Silent p.L332L 0.21 TCGA-34-5928-01 3 14711491 14711491 C G CCDC174 Missense_Mutation p.P335A 0.37 deleterious(0.04) benign(0.001) TCGA-34-5928-01 3 150263869 150263869 G A SERP1 Silent p.I18I 0.08 TCGA-34-5928-01 3 164786883 164786883 A G SI Missense_Mutation p.M119T 0.34 tolerated(0.39) benign(0) TCGA-34-5928-01 3 16636039 16636039 C T DAZL Splice_Site p.X227_splice 0.41 TCGA-34-5928-01 3 167183100 167183100 C G SERPINI2 Missense_Mutation p.A254P 0.14 tolerated(0.12) possibly_damaging(0.832) TCGA-34-5928-01 3 175473112 175473112 G C NAALADL2 Missense_Mutation p.E699Q 0.19 tolerated(0.1) probably_damaging(0.998) TCGA-34-5928-01 3 182923970 182923970 C A MCF2L2 Missense_Mutation p.R915S 0.21 deleterious(0.02) benign(0.168) TCGA-34-5928-01 3 183035889 183035889 G C MCF2L2 Silent p.L240L 0.12 TCGA-34-5928-01 3 183655773 183655773 C G ABCC5 Missense_Mutation p.R1257T 0.07 deleterious(0.01) benign(0.045) TCGA-34-5928-01 3 183894764 183894764 G T AP2M1 5'UTR 0.42 TCGA-34-5928-01 3 184631309 184631309 G A VPS8 Missense_Mutation p.E717K 0.05 tolerated(0.36) benign(0.026) TCGA-34-5928-01 3 186302269 186302269 G C DNAJB11 Missense_Mutation p.K301N 0.04 deleterious(0.03) probably_damaging(1) TCGA-34-5928-01 3 193052756 193052756 G C ATP13A5 Missense_Mutation p.S359C 0.07 tolerated(0.16) probably_damaging(0.93) TCGA-34-5928-01 3 193332589 193332589 C T OPA1 Missense_Mutation p.S37L 0.21 deleterious_low_confidence(0) benign(0.141) TCGA-34-5928-01 3 19921152 19921152 C A EFHB Missense_Mutation p.D825Y 0.34 tolerated(0.08) benign(0.342) TCGA-34-5928-01 3 39178864 39178864 A G TTC21A Missense_Mutation p.I1153V 0.38 tolerated(0.24) benign(0.006) TCGA-34-5928-01 3 45943155 45943155 C T CCR9 Missense_Mutation p.S292F 0.08 tolerated(0.72) benign(0.082) TCGA-34-5928-01 3 48459365 48459365 C G PLXNB1 Missense_Mutation p.G1110A 0.13 deleterious(0) probably_damaging(1) TCGA-34-5928-01 3 48665951 48665951 G A SLC26A6 Silent p.L572L 0.08 TCGA-34-5928-01 3 49885009 49885009 G C TRAIP Missense_Mutation p.F63L 0.04 deleterious(0) possibly_damaging(0.611) TCGA-34-5928-01 3 50004983 50004983 G C RBM6 Missense_Mutation p.R42T 0.15 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-34-5928-01 3 9908844 9908844 G C CIDEC Missense_Mutation p.P241A 0.31 deleterious_low_confidence(0.02) benign(0.345) TCGA-34-5928-01 3 9975242 9975242 C A IL17RC Missense_Mutation p.P781T 0.17 deleterious_low_confidence(0.04) unknown(0) TCGA-34-5928-01 4 134075499 134075499 A T PCDH10 Missense_Mutation p.D890V 0.30 tolerated(0.17) probably_damaging(0.998) TCGA-34-5928-01 4 151392889 151392889 C T LRBA Missense_Mutation p.R2196H 0.22 deleterious(0.02) probably_damaging(0.984) TCGA-34-5928-01 4 154624805 154624805 C T TLR2 Missense_Mutation p.S249L 0.39 tolerated(0.32) benign(0.017) TCGA-34-5928-01 4 155219363 155219363 C T DCHS2 Missense_Mutation p.D1580N 0.45 tolerated(0.22) benign(0.009) TCGA-34-5928-01 4 164393542 164393542 C A TKTL2 Missense_Mutation p.V449F 0.30 deleterious(0) probably_damaging(0.94) TCGA-34-5928-01 4 184931549 184931549 G C STOX2 Missense_Mutation p.D520H 0.26 deleterious(0.01) possibly_damaging(0.682) TCGA-34-5928-01 4 187541760 187541760 C T FAT1 Missense_Mutation p.E1994K 0.12 benign(0.05) TCGA-34-5928-01 4 42558042 42558042 A G ATP8A1 Silent p.F452F 0.16 TCGA-34-5928-01 4 46099262 46099262 G A GABRG1 Missense_Mutation p.S70L 0.28 tolerated(0.06) possibly_damaging(0.649) TCGA-34-5928-01 4 49009279 49009279 G A CWH43 Silent p.L374L 0.36 TCGA-34-5928-01 4 55964928 55964928 C A KDR Missense_Mutation p.G770V 0.23 deleterious(0) probably_damaging(0.991) TCGA-34-5928-01 4 55964929 55964929 C A KDR Missense_Mutation p.G770C 0.23 deleterious(0) probably_damaging(0.998) TCGA-34-5928-01 4 62598726 62598726 G T LPHN3 Missense_Mutation p.A217S 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-34-5928-01 4 79391175 79391175 C T FRAS1 Missense_Mutation p.P2434L 0.19 probably_damaging(0.965) TCGA-34-5928-01 4 79391176 79391176 G T FRAS1 Silent p.P2434P 0.18 TCGA-34-5928-01 4 88578214 88578214 G T DMP1 Missense_Mutation p.D29Y 0.39 deleterious(0) benign(0.017) TCGA-34-5928-01 5 101572570 101572570 C G SLCO4C1 Missense_Mutation p.E723Q 0.08 deleterious_low_confidence(0.04) benign(0.155) TCGA-34-5928-01 5 102472516 102472516 A T PPIP5K2 Missense_Mutation p.I131L 0.47 tolerated(0.61) benign(0.263) TCGA-34-5928-01 5 1394869 1394869 C G SLC6A3 Missense_Mutation p.R615P 0.18 deleterious(0.04) benign(0.37) TCGA-34-5928-01 5 140182467 140182467 C T PCDHA3 Missense_Mutation p.A562V 0.47 deleterious_low_confidence(0.04) benign(0.209) TCGA-34-5928-01 5 140202001 140202001 C G PCDHA5 Missense_Mutation p.T214S 0.41 tolerated_low_confidence(0.13) benign(0.107) TCGA-34-5928-01 5 140235693 140235693 C A PCDHA10 Silent p.L20L 0.08 TCGA-34-5928-01 5 140762918 140762918 G A PCDHGA7 Missense_Mutation p.R151Q 0.13 deleterious_low_confidence(0.02) possibly_damaging(0.805) TCGA-34-5928-01 5 140869078 140869078 G A PCDHGC5 Missense_Mutation p.D91N 0.53 deleterious(0) probably_damaging(0.999) TCGA-34-5928-01 5 142779948 142779948 C T NR3C1 Missense_Mutation p.E153K 0.47 tolerated_low_confidence(0.12) benign(0.021) TCGA-34-5928-01 5 149751721 149751721 G T TCOF1 Missense_Mutation p.K264N 0.18 deleterious(0.03) possibly_damaging(0.841) TCGA-34-5928-01 5 149751728 149751728 G A TCOF1 Missense_Mutation p.E267K 0.14 tolerated(0.24) possibly_damaging(0.549) TCGA-34-5928-01 5 150945454 150945454 G A FAT2 Silent p.L1013L 0.12 TCGA-34-5928-01 5 157075874 157075874 C G SOX30 Missense_Mutation p.R333T 0.07 deleterious(0.01) possibly_damaging(0.87) TCGA-34-5928-01 5 161300148 161300148 G T GABRA1 Missense_Mutation p.R94L 0.44 deleterious(0) possibly_damaging(0.633) TCGA-34-5928-01 5 175520215 175520215 C A FAM153B Missense_Mutation p.L16I 0.25 tolerated_low_confidence(0.41) benign(0) TCGA-34-5928-01 5 21854886 21854886 G A CDH12 Silent p.L180L 0.09 TCGA-34-5928-01 5 33944724 33944724 G C SLC45A2 3'UTR 0.33 TCGA-34-5928-01 5 33989607 33989607 C A AMACR Missense_Mutation p.G247V 0.14 deleterious(0.01) probably_damaging(0.977) TCGA-34-5928-01 5 35712973 35712973 G T SPEF2 Missense_Mutation p.A967S 0.38 tolerated(1) benign(0.001) TCGA-34-5928-01 5 40768986 40768986 C T PRKAA1 Intron 0.16 TCGA-34-5928-01 5 41004915 41004915 G C MROH2B Missense_Mutation p.I1324M 0.05 deleterious(0.01) probably_damaging(0.958) TCGA-34-5928-01 5 41853624 41853624 C T OXCT1 Missense_Mutation p.R104Q 0.33 tolerated(0.93) benign(0.003) TCGA-34-5928-01 5 43299047 43299047 C G HMGCS1 Missense_Mutation p.L7F 0.09 tolerated(0.3) benign(0.275) TCGA-34-5928-01 5 43453863 43453863 C G C5orf28 Missense_Mutation p.G70A 0.10 tolerated(0.09) possibly_damaging(0.623) TCGA-34-5928-01 5 45396766 45396766 A G HCN1 Missense_Mutation p.M353T 0.36 deleterious(0.02) benign(0.233) TCGA-34-5928-01 5 76932978 76932978 C A OTP Missense_Mutation p.G39W 0.37 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-34-5928-01 5 77717666 77717666 G T SCAMP1 Missense_Mutation p.A172S 0.42 tolerated(0.07) benign(0.094) TCGA-34-5928-01 5 9202090 9202090 G A SEMA5A Silent p.I303I 0.06 TCGA-34-5928-01 6 123687319 123687319 G A TRDN Nonsense_Mutation p.R428* 0.38 TCGA-34-5928-01 6 125139577 125139577 C T NKAIN2 Nonsense_Mutation p.Q194* 0.10 TCGA-34-5928-01 6 130370465 130370465 A G L3MBTL3 Silent p.T47T 0.36 TCGA-34-5928-01 6 131902484 131902484 C T ARG1 Missense_Mutation p.P152L 0.36 deleterious(0) probably_damaging(0.995) TCGA-34-5928-01 6 132892144 132892144 G A TAAR6 Silent p.A228A 0.37 TCGA-34-5928-01 6 151121912 151121912 G A PLEKHG1 Silent p.R229R 0.42 TCGA-34-5928-01 6 30071176 30071176 G C TRIM31 3'UTR 0.07 TCGA-34-5928-01 6 31752382 31752382 G C VARS Missense_Mutation p.S486C 0.10 deleterious(0) probably_damaging(0.998) TCGA-34-5928-01 6 35211449 35211449 G C SCUBE3 Missense_Mutation p.R663T 0.06 tolerated(0.33) benign(0.006) TCGA-34-5928-01 6 36714258 36714258 T A CPNE5 Missense_Mutation p.H372L 0.62 deleterious(0) benign(0.09) TCGA-34-5928-01 6 38560460 38560460 G C BTBD9 Missense_Mutation p.L236V 0.41 deleterious(0) unknown(0) TCGA-34-5928-01 6 38899745 38899745 G C DNAH8 Missense_Mutation p.R3594S 0.21 benign(0.232) TCGA-34-5928-01 6 39271838 39271838 G A KCNK17 Silent p.L195L 0.34 TCGA-34-5928-01 6 43222319 43222319 A G TTBK1 Missense_Mutation p.Y169C 0.30 benign(0.302) TCGA-34-5928-01 6 46979767 46979767 G T GPR110 Missense_Mutation p.F364L 0.16 tolerated(0.68) benign(0.003) TCGA-34-5928-01 6 49698956 49698956 C A CRISP3 Missense_Mutation p.W200L 0.35 tolerated(0.66) benign(0) TCGA-34-5928-01 6 50791151 50791151 C A TFAP2B Nonsense_Mutation p.S38* 0.25 TCGA-34-5928-01 6 74533185 74533185 G A CD109 Missense_Mutation p.R1389K 0.45 tolerated(0.05) possibly_damaging(0.475) TCGA-34-5928-01 6 88769180 88769180 A G SPACA1 Missense_Mutation p.I162V 0.33 tolerated(0.27) benign(0.004) TCGA-34-5928-01 7 122027211 122027211 C G CADPS2 Missense_Mutation p.E1061Q 0.14 tolerated(0.27) benign(0.056) TCGA-34-5928-01 7 122056162 122056162 C G CADPS2 Missense_Mutation p.E845Q 0.40 deleterious(0) probably_damaging(0.984) TCGA-34-5928-01 7 135418826 135418826 G T FAM180A Missense_Mutation p.S140Y 0.33 deleterious(0) probably_damaging(0.931) TCGA-34-5928-01 7 137075894 137075894 G A DGKI 3'UTR 0.24 TCGA-34-5928-01 7 142723506 142723506 G A OR9A2 Silent p.A238A 0.21 TCGA-34-5928-01 7 143085896 143085896 A G ZYX Missense_Mutation p.I451V 0.16 deleterious(0) probably_damaging(0.998) TCGA-34-5928-01 7 143141402 143141402 A G TAS2R60 Missense_Mutation p.Y286C 0.38 deleterious(0) probably_damaging(0.911) TCGA-34-5928-01 7 149425626 149425626 G A KRBA1 Missense_Mutation p.G496E 0.28 deleterious(0.03) probably_damaging(0.998) TCGA-34-5928-01 7 150094078 150094078 G A ZNF775 Missense_Mutation p.R170Q 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-34-5928-01 7 150094922 150094922 C T ZNF775 Silent p.C451C 0.23 TCGA-34-5928-01 7 1512808 1512808 G A INTS1 Silent p.F1990F 0.13 TCGA-34-5928-01 7 152055756 152055756 G A KMT2C Nonsense_Mutation p.R56* 0.27 TCGA-34-5928-01 7 15405803 15405803 G A AGMO Silent p.I373I 0.12 TCGA-34-5928-01 7 42959179 42959179 C T PSMA2 Intron 0.18 TCGA-34-5928-01 7 45725805 45725805 C T ADCY1 Missense_Mutation p.T773I 0.24 tolerated(0.17) benign(0.045) TCGA-34-5928-01 7 48319431 48319431 C G ABCA13 Missense_Mutation p.F2880L 0.42 benign(0.006) TCGA-34-5928-01 7 57528779 57528779 G A ZNF716 Silent p.Q204Q 0.22 TCGA-34-5928-01 7 5983007 5983007 G A RSPH10B Missense_Mutation p.A569V 0.19 tolerated(0.55) benign(0.023) TCGA-34-5928-01 7 6077058 6077058 C G EIF2AK1 Silent p.L443L 0.07 TCGA-34-5928-01 7 8153431 8153431 C T ICA1 3'UTR 0.23 TCGA-34-5928-01 7 86509809 86509809 G A KIAA1324L Missense_Mutation p.T1023I 0.28 deleterious(0) benign(0.088) TCGA-34-5928-01 7 91502850 91502850 C G MTERF 3'UTR 0.13 TCGA-34-5928-01 7 91699518 91699518 A T AKAP9 Nonsense_Mutation p.K2169* 0.19 TCGA-34-5928-01 7 95115428 95115428 G C ASB4 Missense_Mutation p.E49Q 0.03 deleterious(0) benign(0.07) TCGA-34-5928-01 7 95751219 95751219 C G SLC25A13 Missense_Mutation p.G562A 0.23 deleterious(0) probably_damaging(0.921) TCGA-34-5928-01 7 99631580 99631580 G T ZKSCAN1 Silent p.T484T 0.23 TCGA-34-5928-01 7 99998905 99998905 G A ZCWPW1 Missense_Mutation p.S560L 0.12 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-34-5928-01 8 102570785 102570785 C T GRHL2 Silent p.I141I 0.18 TCGA-34-5928-01 8 105025769 105025769 A G RIMS2 Silent p.E1048E 0.03 TCGA-34-5928-01 8 107773726 107773726 C G ABRA Missense_Mutation p.E229Q 0.04 deleterious(0.04) probably_damaging(0.945) TCGA-34-5928-01 8 108334175 108334175 C T ANGPT1 Missense_Mutation p.E253K 0.23 tolerated(0.12) benign(0.367) TCGA-34-5928-01 8 120118073 120118073 C T COLEC10 Silent p.F159F 0.06 TCGA-34-5928-01 8 120252475 120252475 C G MAL2 Missense_Mutation p.S125C 0.08 tolerated(0.06) probably_damaging(0.946) TCGA-34-5928-01 8 121514775 121514775 C A MTBP Silent p.T551T 0.23 TCGA-34-5928-01 8 124146371 124146371 A T TBC1D31 Silent p.R808R 0.15 TCGA-34-5928-01 8 134063088 134063088 C G SLA Missense_Mutation p.R85P 0.07 tolerated(0.16) possibly_damaging(0.699) TCGA-34-5928-01 8 143959226 143959226 G T CYP11B1 Intron 0.11 TCGA-34-5928-01 8 143959227 143959227 G T CYP11B1 Intron 0.11 TCGA-34-5928-01 8 144942409 144942409 G C EPPK1 Silent p.L1671L 0.05 TCGA-34-5928-01 8 144943418 144943418 G A EPPK1 Missense_Mutation p.S1335F 0.15 benign(0.122) TCGA-34-5928-01 8 145641346 145641346 C T SLC39A4 Missense_Mutation p.E108K 0.19 tolerated(0.62) benign(0.014) TCGA-34-5928-01 8 17819547 17819547 C T PCM1 Missense_Mutation p.S776L 0.31 tolerated(0.05) possibly_damaging(0.745) TCGA-34-5928-01 8 39495998 39495998 C A ADAM18 Missense_Mutation p.P281H 0.12 deleterious(0) probably_damaging(0.989) TCGA-34-5928-01 8 48815131 48815131 G C PRKDC Missense_Mutation p.F1089L 0.19 possibly_damaging(0.73) TCGA-34-5928-01 8 63973878 63973878 T C TTPA Missense_Mutation p.Q257R 0.18 tolerated(0.15) benign(0.019) TCGA-34-5928-01 8 69104751 69104751 G A PREX2 Missense_Mutation p.G1532D 0.13 deleterious(0) probably_damaging(0.994) TCGA-34-5928-01 8 69445374 69445374 G A C8orf34 Missense_Mutation p.M365I 0.20 tolerated(0.22) possibly_damaging(0.888) TCGA-34-5928-01 8 71574130 71574130 C G LACTB2 Missense_Mutation p.R42T 0.22 deleterious(0) probably_damaging(0.983) TCGA-34-5928-01 8 77617479 77617479 G A ZFHX4 Missense_Mutation p.A386T 0.14 benign(0.004) TCGA-34-5928-01 8 99961747 99961747 C A OSR2 Silent p.I189I 0.48 TCGA-34-5928-01 9 107289477 107289477 T A OR13C4 Missense_Mutation p.N5I 0.19 deleterious(0) probably_damaging(0.999) TCGA-34-5928-01 9 107574967 107574967 C A ABCA1 Missense_Mutation p.G1313V 0.33 deleterious(0.02) benign(0.115) TCGA-34-5928-01 9 107574968 107574968 C A ABCA1 Missense_Mutation p.G1313C 0.33 deleterious(0.01) probably_damaging(0.91) TCGA-34-5928-01 9 128000963 128000963 A T HSPA5 Missense_Mutation p.N380K 0.06 deleterious_low_confidence(0.03) benign(0.015) TCGA-34-5928-01 9 128434763 128434763 G C MAPKAP1 Missense_Mutation p.L31V 0.07 deleterious(0.02) possibly_damaging(0.897) TCGA-34-5928-01 9 129453241 129453242 - A LMX1B Frame_Shift_Ins p.D154Rfs*15 0.35 TCGA-34-5928-01 9 130116584 130116584 C G GARNL3 Missense_Mutation p.R552G 0.17 tolerated(0.06) probably_damaging(0.964) TCGA-34-5928-01 9 130653125 130653125 C G ST6GALNAC6 Silent p.L165L 0.06 TCGA-34-5928-01 9 19372047 19372047 A G DENND4C Missense_Mutation p.N1869S 0.11 tolerated(0.12) benign(0.012) TCGA-34-5928-01 9 21409532 21409532 G T IFNA8 Silent p.L119L 0.10 TCGA-34-5928-01 9 21409534 21409534 A G IFNA8 Missense_Mutation p.E120G 0.10 deleterious(0) probably_damaging(0.984) TCGA-34-5928-01 9 27284754 27284754 C T EQTN Silent p.E284E 0.10 TCGA-34-5928-01 9 32543189 32543189 G A TOPORS Missense_Mutation p.S445L 0.05 deleterious(0) possibly_damaging(0.898) TCGA-34-5928-01 9 69200585 69200585 C T FOXD4L6 Missense_Mutation p.R343K 0.38 tolerated_low_confidence(0.06) benign(0) TCGA-34-5928-01 9 6984310 6984310 G A KDM4C Silent p.V420V 0.07 TCGA-34-5928-01 9 98740391 98740391 G C ERCC6L2 Missense_Mutation p.G101A 0.04 deleterious(0) probably_damaging(0.999) TCGA-34-5928-01 X 102974156 102974156 C A GLRA4 Missense_Mutation p.Q254H 0.41 deleterious(0) probably_damaging(0.987) TCGA-34-5928-01 X 106082562 106082562 G C TBC1D8B Missense_Mutation p.E410Q 0.38 tolerated(0.49) benign(0.017) TCGA-34-5928-01 X 110644424 110644424 T A DCX Missense_Mutation p.S248C 0.37 deleterious(0.01) possibly_damaging(0.662) TCGA-34-5928-01 X 118123389 118123389 C T LONRF3 Missense_Mutation p.H360Y 0.29 tolerated(0.45) possibly_damaging(0.635) TCGA-34-5928-01 X 120181736 120181736 C G GLUD2 Missense_Mutation p.F66L 0.15 deleterious(0.02) benign(0.275) TCGA-34-5928-01 X 122319713 122319713 G C GRIA3 Missense_Mutation p.E47Q 0.13 deleterious(0.05) probably_damaging(0.999) TCGA-34-5928-01 X 129155069 129155069 A T BCORL1 Missense_Mutation p.K1184M 0.22 possibly_damaging(0.885) TCGA-34-5928-01 X 148797962 148797962 A T MAGEA11 Missense_Mutation p.Q272H 0.37 deleterious(0.04) possibly_damaging(0.726) TCGA-34-5928-01 X 153589882 153589882 G C FLNA Missense_Mutation p.Q1001E 0.35 tolerated(0.08) possibly_damaging(0.812) TCGA-34-5928-01 X 17818858 17818858 C A RAI2 Nonsense_Mutation p.E425* 0.05 TCGA-34-5928-01 X 29973281 29973281 C T IL1RAPL1 Missense_Mutation p.P479S 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-34-5928-01 X 3242837 3242837 C G MXRA5 Missense_Mutation p.E297Q 0.17 tolerated(0.3) benign(0.347) TCGA-34-5928-01 X 35974215 35974215 A C CXorf22 Missense_Mutation p.N438H 0.44 deleterious(0) probably_damaging(1) TCGA-34-5928-01 X 41307168 41307168 T A NYX Missense_Mutation p.L9Q 0.37 deleterious_low_confidence(0.04) possibly_damaging(0.902) TCGA-34-5928-01 X 47835510 47835510 G A ZNF182 3'UTR 0.45 TCGA-34-5929-01 10 113928664 113928664 C A GPAM Missense_Mutation p.D281Y 0.56 deleterious(0) probably_damaging(0.997) TCGA-34-5929-01 10 33468997 33468997 T C NRP1 3'UTR 0.35 TCGA-34-5929-01 10 43600477 43600477 G C RET Missense_Mutation p.E235Q 0.78 deleterious(0.02) probably_damaging(0.982) TCGA-34-5929-01 10 43691988 43691988 C T RASGEF1A Missense_Mutation p.V453I 0.54 tolerated(0.21) benign(0) TCGA-34-5929-01 10 49687694 49687694 C T ARHGAP22 Missense_Mutation p.A146T 0.65 deleterious(0) benign(0.287) TCGA-34-5929-01 10 95892112 95892112 C T PLCE1 Missense_Mutation p.S463L 0.60 deleterious_low_confidence(0.01) benign(0.102) TCGA-34-5929-01 11 10483143 10483143 C A AMPD3 Missense_Mutation p.A35D 0.59 deleterious(0) probably_damaging(0.999) TCGA-34-5929-01 11 110126072 110126072 C T RDX Missense_Mutation p.R246K 0.32 tolerated(0.07) possibly_damaging(0.5) TCGA-34-5929-01 11 113105811 113105811 G A NCAM1 Missense_Mutation p.V633I 0.33 tolerated(0.31) benign(0.055) TCGA-34-5929-01 11 123813782 123813782 G T OR6T1 Missense_Mutation p.S255Y 0.37 deleterious(0.02) probably_damaging(0.937) TCGA-34-5929-01 11 123886704 123886704 C A OR10G4 Silent p.A141A 0.26 TCGA-34-5929-01 11 1269877 1269877 A T MUC5B Missense_Mutation p.T3923S 0.45 unknown(0) TCGA-34-5929-01 11 46903277 46903277 A G LRP4 Silent p.A930A 0.26 TCGA-34-5929-01 11 50003473 50003473 C A OR4C12 Missense_Mutation p.D189Y 0.40 deleterious_low_confidence(0) probably_damaging(1) TCGA-34-5929-01 11 55111305 55111305 C A OR4A16 Missense_Mutation p.T210N 0.36 tolerated_low_confidence(0.05) benign(0.048) TCGA-34-5929-01 11 57004427 57004427 C A APLNR Nonsense_Mutation p.E18* 0.33 TCGA-34-5929-01 11 59629138 59629138 G T TCN1 Missense_Mutation p.P140T 0.39 deleterious(0) probably_damaging(0.965) TCGA-34-5929-01 11 66472936 66472936 T C SPTBN2 Missense_Mutation p.Y604C 0.40 deleterious(0) possibly_damaging(0.859) TCGA-34-5929-01 11 68574988 68574988 C A CPT1A Missense_Mutation p.G134W 0.39 deleterious(0) probably_damaging(0.998) TCGA-34-5929-01 11 84245650 84245650 T A DLG2 Missense_Mutation p.H161L 0.32 deleterious(0.04) probably_damaging(0.964) TCGA-34-5929-01 12 100175865 100175865 C T ANKS1B Missense_Mutation p.G227E 0.50 deleterious(0) possibly_damaging(0.845) TCGA-34-5929-01 12 100790151 100790151 C T SLC17A8 Missense_Mutation p.A211V 0.33 deleterious(0) possibly_damaging(0.842) TCGA-34-5929-01 12 100813957 100813957 T C SLC17A8 3'UTR 0.43 TCGA-34-5929-01 12 103699929 103699929 C G C12orf42 Missense_Mutation p.E152Q 0.34 deleterious(0.04) benign(0.024) TCGA-34-5929-01 12 105388301 105388301 G T C12orf45 Missense_Mutation p.D129Y 0.44 deleterious(0) probably_damaging(0.98) TCGA-34-5929-01 12 11174456 11174456 C A TAS2R19 Missense_Mutation p.A239S 0.35 deleterious(0.05) benign(0.279) TCGA-34-5929-01 12 129566569 129566569 C A TMEM132D Missense_Mutation p.G553V 0.29 deleterious(0.01) benign(0.113) TCGA-34-5929-01 12 2929267 2929267 G C ITFG2 Missense_Mutation p.R141P 0.43 tolerated(0.19) benign(0.079) TCGA-34-5929-01 12 29498455 29498455 T C ERGIC2 Missense_Mutation p.Y249C 0.44 deleterious(0) probably_damaging(1) TCGA-34-5929-01 12 42499711 42499711 C A GXYLT1 Missense_Mutation p.R258L 0.34 deleterious(0) probably_damaging(1) TCGA-34-5929-01 12 5853362 5853362 G T ANO2 Missense_Mutation p.P434T 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-34-5929-01 13 26411385 26411385 T A ATP8A2 Missense_Mutation p.Y947N 0.63 deleterious(0.02) probably_damaging(1) TCGA-34-5929-01 13 28239962 28239962 G A POLR1D Missense_Mutation p.E81K 0.47 tolerated(0.39) benign(0.124) TCGA-34-5929-01 14 20249034 20249034 G T OR4M1 Missense_Mutation p.V185F 0.52 tolerated(0.08) benign(0.367) TCGA-34-5929-01 14 22314925 22314925 G T TRAV8-2 5'UTR 0.62 TCGA-34-5929-01 14 68249614 68249614 C A ZFYVE26 Nonsense_Mutation p.E1419* 0.62 TCGA-34-5929-01 14 74876056 74876056 T C SYNDIG1L Missense_Mutation p.Q131R 0.60 tolerated(0.43) benign(0.001) TCGA-34-5929-01 14 86087896 86087896 C A FLRT2 Missense_Mutation p.A13D 0.61 tolerated(0.24) benign(0.159) TCGA-34-5929-01 15 100341348 100341348 T A DNM1P46 RNA 0.57 TCGA-34-5929-01 15 34064313 34064313 C A RYR3 Silent p.S3003S 0.48 TCGA-34-5929-01 15 34673583 34673583 C G GOLGA8A 3'UTR 0.28 TCGA-34-5929-01 15 35087033 35087033 T C ACTC1 Splice_Site 0.45 TCGA-34-5929-01 15 41813976 41813976 C T RPAP1 Missense_Mutation p.E1000K 0.27 deleterious(0) possibly_damaging(0.556) TCGA-34-5929-01 15 45007768 45007768 C G B2M Nonsense_Mutation p.S72* 0.49 TCGA-34-5929-01 15 48062819 48062819 C A SEMA6D Silent p.R687R 0.64 TCGA-34-5929-01 15 48414101 48414101 G T SLC24A5 Missense_Mutation p.G57W 0.57 deleterious(0.01) probably_damaging(0.933) TCGA-34-5929-01 15 49127093 49127093 T C SHC4 Missense_Mutation p.E537G 0.07 deleterious(0) probably_damaging(1) TCGA-34-5929-01 15 50792921 50792921 A G USP8 3'UTR 0.89 TCGA-34-5929-01 15 60747529 60747529 T C NARG2 Missense_Mutation p.H260R 0.11 tolerated(0.08) benign(0.007) TCGA-34-5929-01 16 23226877 23226877 G A SCNN1G 3'UTR 0.35 TCGA-34-5929-01 16 32063505 32063505 C A AC142381.1 Silent p.G65G 0.14 TCGA-34-5929-01 16 32063506 32063506 C A AC142381.1 Silent p.R66R 0.15 TCGA-34-5929-01 16 51174483 51174483 A T SALL1 Silent p.T550T 0.59 TCGA-34-5929-01 16 74923669 74923669 C A WDR59 Silent p.P709P 0.67 TCGA-34-5929-01 16 81272388 81272388 G C BCMO1 5'UTR 0.67 TCGA-34-5929-01 17 61514793 61514793 C A CYB561 Missense_Mutation p.R39L 0.73 tolerated(0.16) benign(0.187) TCGA-34-5929-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.85 deleterious(0) probably_damaging(0.997) TCGA-34-5929-01 17 78179367 78179367 G A CARD14 Silent p.Q869Q 0.62 TCGA-34-5929-01 18 30260198 30260198 G T KLHL14 Missense_Mutation p.R508S 0.34 deleterious(0.03) probably_damaging(0.931) TCGA-34-5929-01 18 3215016 3215016 G T MYOM1 Missense_Mutation p.S69Y 0.36 tolerated_low_confidence(1) benign(0.001) TCGA-34-5929-01 18 66513659 66513659 G C CCDC102B Splice_Site p.X312_splice 0.31 TCGA-34-5929-01 18 74563729 74563729 A G ZNF236 Splice_Site p.X65_splice 0.25 TCGA-34-5929-01 18 8624946 8624946 C T RAB12 Silent p.F79F 0.28 TCGA-34-5929-01 19 18420657 18420657 G C LSM4 Missense_Mutation p.F53L 0.31 deleterious(0.01) benign(0.194) TCGA-34-5929-01 19 21366407 21366407 G T ZNF431 Missense_Mutation p.G434V 0.31 deleterious(0) probably_damaging(1) TCGA-34-5929-01 19 21477005 21477005 C A ZNF708 Nonsense_Mutation p.E255* 0.23 TCGA-34-5929-01 19 2410385 2410385 C G TMPRSS9 Missense_Mutation p.S382C 0.39 deleterious(0) probably_damaging(0.992) TCGA-34-5929-01 19 2477492 2477492 C T GADD45B Missense_Mutation p.H126Y 0.41 tolerated(0.53) benign(0.085) TCGA-34-5929-01 19 34712411 34712411 G C LSM14A Splice_Site p.X379_splice 0.47 TCGA-34-5929-01 19 35790486 35790486 G A MAG Missense_Mutation p.V149M 0.29 tolerated(0.11) possibly_damaging(0.469) TCGA-34-5929-01 19 36303141 36303141 C T PRODH2 Missense_Mutation p.M211I 0.41 deleterious(0.02) benign(0.137) TCGA-34-5929-01 19 36322604 36322604 G T NPHS1 Missense_Mutation p.S1076Y 0.36 deleterious(0.01) possibly_damaging(0.721) TCGA-34-5929-01 19 39914208 39914208 A G PLEKHG2 Silent p.A838A 0.27 TCGA-34-5929-01 19 48945536 48945536 G T GRIN2D Missense_Mutation p.G857V 0.34 tolerated(0.09) probably_damaging(0.999) TCGA-34-5929-01 19 49300560 49300560 C A BCAT2 Missense_Mutation p.Q242H 0.27 tolerated(0.21) benign(0.011) TCGA-34-5929-01 19 50411813 50411813 T A NUP62 Missense_Mutation p.S418C 0.34 deleterious(0) probably_damaging(0.976) TCGA-34-5929-01 19 56952825 56952825 G C ZNF667 Missense_Mutation p.H513Q 0.37 deleterious(0.04) probably_damaging(0.996) TCGA-34-5929-01 1 10460560 10460560 G A PGD Silent p.L65L 0.32 TCGA-34-5929-01 1 114354943 114354943 C G RSBN1 Missense_Mutation p.R31P 0.51 deleterious_low_confidence(0) possibly_damaging(0.655) TCGA-34-5929-01 1 117158825 117158825 C A IGSF3 Missense_Mutation p.G100W 0.34 deleterious(0) possibly_damaging(0.908) TCGA-34-5929-01 1 12999060 12999060 C T PRAMEF6 Silent p.L292L 0.10 TCGA-34-5929-01 1 155887334 155887334 C A KIAA0907 Nonsense_Mutation p.E466* 0.44 TCGA-34-5929-01 1 156040162 156040162 G A RAB25 3'UTR 0.54 TCGA-34-5929-01 1 158436285 158436285 C A OR10K1 Missense_Mutation p.L312I 0.34 tolerated_low_confidence(0.29) benign(0) TCGA-34-5929-01 1 158636282 158636282 G T SPTA1 Missense_Mutation p.Q682K 0.30 tolerated(1) possibly_damaging(0.595) TCGA-34-5929-01 1 158636283 158636283 G T SPTA1 Silent p.T681T 0.30 TCGA-34-5929-01 1 161594203 161594203 G T FCGR3B 3'UTR 0.40 TCGA-34-5929-01 1 16265944 16265944 C A SPEN 3'UTR 0.32 TCGA-34-5929-01 1 181018381 181018381 G T MR1 Silent p.L87L 0.28 TCGA-34-5929-01 1 181701998 181701998 G A CACNA1E Missense_Mutation p.V926I 0.38 tolerated(0.2) benign(0.103) TCGA-34-5929-01 1 1920058 1920058 C G C1orf222 Missense_Mutation p.L54F 0.35 tolerated(0.23) benign(0.256) TCGA-34-5929-01 1 204985559 204985559 C T NFASC Silent p.D1205D 0.35 TCGA-34-5929-01 1 207648352 207648352 C A CR2 Missense_Mutation p.P836Q 0.38 deleterious(0) probably_damaging(1) TCGA-34-5929-01 1 20931448 20931448 C A CDA Missense_Mutation p.P61Q 0.39 deleterious(0.05) probably_damaging(0.939) TCGA-34-5929-01 1 210856666 210856666 G T KCNH1 Missense_Mutation p.P976Q 0.30 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-34-5929-01 1 226065176 226065176 C A TMEM63A Silent p.S35S 0.23 TCGA-34-5929-01 1 228562323 228562323 C G OBSCN Missense_Mutation p.I8468M 0.31 probably_damaging(0.984) TCGA-34-5929-01 1 237919670 237919670 C A RYR2 Missense_Mutation p.T3743K 0.35 benign(0.334) TCGA-34-5929-01 1 247614885 247614885 G A OR2B11 Silent p.L134L 0.26 TCGA-34-5929-01 1 248738056 248738056 C A OR2T34 Translation_Start_Site p.M1? 0.20 deleterious_low_confidence(0) possibly_damaging(0.827) TCGA-34-5929-01 1 248801900 248801900 G A OR2T35 Silent p.H220H 0.40 TCGA-34-5929-01 1 26387757 26387757 C G TRIM63 Missense_Mutation p.C134S 0.34 deleterious(0) probably_damaging(0.999) TCGA-34-5929-01 1 35915495 35915495 C T KIAA0319L Missense_Mutation p.D776N 0.35 deleterious(0.02) probably_damaging(0.993) TCGA-34-5929-01 1 55608723 55608723 C A USP24 Nonsense_Mutation p.E837* 0.56 TCGA-34-5929-01 1 6642200 6642200 C G ZBTB48 Nonsense_Mutation p.S258* 0.38 TCGA-34-5929-01 1 70446077 70446077 C A LRRC7 Missense_Mutation p.Q205K 0.32 deleterious(0.03) benign(0.138) TCGA-34-5929-01 20 16336978 16336978 G A KIF16B Silent p.V1206V 0.34 TCGA-34-5929-01 20 25239970 25239970 A T PYGB Missense_Mutation p.Y114F 0.06 tolerated(0.2) possibly_damaging(0.673) TCGA-34-5929-01 20 40043904 40043904 C A CHD6 Silent p.R2287R 0.36 TCGA-34-5929-01 20 42789044 42789044 G A JPH2 Missense_Mutation p.T128M 0.38 deleterious(0) probably_damaging(0.997) TCGA-34-5929-01 20 46301014 46301014 C T SULF2 Missense_Mutation p.E502K 0.42 tolerated(1) benign(0.001) TCGA-34-5929-01 20 49214214 49214214 C A FAM65C Nonsense_Mutation p.E561* 0.38 TCGA-34-5929-01 20 51870967 51870967 G T TSHZ2 Missense_Mutation p.V324F 0.44 deleterious(0.02) possibly_damaging(0.552) TCGA-34-5929-01 20 61296570 61296570 G A SLCO4A1 Intron 0.31 TCGA-34-5929-01 21 28214679 28214679 T C ADAMTS1 Silent p.T352T 0.34 TCGA-34-5929-01 22 22869796 22869796 T C ZNF280A Silent p.S53S 0.30 TCGA-34-5929-01 22 23487634 23487634 C T RAB36 Missense_Mutation p.R28C 0.38 tolerated_low_confidence(0.12) benign(0) TCGA-34-5929-01 22 25251545 25251545 G C SGSM1 Missense_Mutation p.M233I 0.37 tolerated(0.14) benign(0.284) TCGA-34-5929-01 22 32828430 32828430 A G BPIFC Missense_Mutation p.I360T 0.32 deleterious(0) probably_damaging(0.932) TCGA-34-5929-01 2 106761798 106761798 G C UXS1 Missense_Mutation p.S107C 0.30 deleterious(0) probably_damaging(1) TCGA-34-5929-01 2 131116818 131116818 G A PTPN18 Missense_Mutation p.R72Q 0.36 deleterious(0.03) possibly_damaging(0.732) TCGA-34-5929-01 2 136633875 136633875 C T MCM6 Missense_Mutation p.E21K 0.38 tolerated(0.17) benign(0.217) TCGA-34-5929-01 2 1499811 1499811 T C TPO Missense_Mutation p.L686P 0.34 deleterious(0) probably_damaging(1) TCGA-34-5929-01 2 163083088 163083088 C A FAP Missense_Mutation p.K45N 0.28 tolerated(0.34) benign(0.001) TCGA-34-5929-01 2 167094728 167094728 A T SCN9A Missense_Mutation p.L1215Q 0.36 deleterious(0) probably_damaging(0.997) TCGA-34-5929-01 2 179477683 179477683 C G TTN Missense_Mutation p.E16589Q 0.35 TCGA-34-5929-01 2 179606388 179606388 C T TTN Missense_Mutation p.V3858M 0.31 TCGA-34-5929-01 2 186680145 186680145 C G FSIP2 Missense_Mutation p.H6880Q 0.31 probably_damaging(0.996) TCGA-34-5929-01 2 189876374 189876374 C A COL3A1 Missense_Mutation p.S1425R 0.36 unknown(0) TCGA-34-5929-01 2 192248021 192248021 C T MYO1B Missense_Mutation p.H436Y 0.25 deleterious(0.04) possibly_damaging(0.646) TCGA-34-5929-01 2 198950160 198950160 C G PLCL1 Nonsense_Mutation p.S640* 0.45 TCGA-34-5929-01 2 202501504 202501504 G A TMEM237 Nonsense_Mutation p.Q81* 0.32 TCGA-34-5929-01 2 216177122 216177122 C T ATIC Intron 0.33 TCGA-34-5929-01 2 216248165 216248165 C G FN1 Missense_Mutation p.D1646H 0.36 tolerated(0.08) probably_damaging(0.944) TCGA-34-5929-01 2 216946465 216946465 C A PECR 5'UTR 0.26 TCGA-34-5929-01 2 219525752 219525752 C G BCS1L Silent p.P14P 0.33 TCGA-34-5929-01 2 219903729 219903729 C T CCDC108 Silent p.Q14Q 0.35 TCGA-34-5929-01 2 226447508 226447508 G A NYAP2 Missense_Mutation p.A459T 0.05 tolerated(0.41) possibly_damaging(0.508) TCGA-34-5929-01 2 230643175 230643175 C T TRIP12 Missense_Mutation p.A1705T 0.28 deleterious(0) probably_damaging(0.997) TCGA-34-5929-01 2 233899701 233899701 C T NEU2 Silent p.Y359Y 0.34 TCGA-34-5929-01 2 235951762 235951762 C T SH3BP4 Silent p.L783L 0.42 TCGA-34-5929-01 2 241622269 241622269 C T AQP12B 5'UTR 0.31 TCGA-34-5929-01 2 29287700 29287700 G T C2orf71 3'UTR 0.22 TCGA-34-5929-01 2 33487888 33487888 G A LTBP1 Missense_Mutation p.V840I 0.29 tolerated(0.18) benign(0.027) TCGA-34-5929-01 2 48872233 48872233 G T STON1-GTF2A1L Missense_Mutation p.G826V 0.29 deleterious(0) probably_damaging(0.994) TCGA-34-5929-01 2 61456111 61456111 A C USP34 Missense_Mutation p.S2407A 0.39 tolerated(0.46) benign(0.005) TCGA-34-5929-01 2 79385460 79385460 G T REG3A Missense_Mutation p.P109T 0.46 deleterious(0.05) probably_damaging(0.974) TCGA-34-5929-01 2 95537563 95537563 C A TEKT4 Missense_Mutation p.A80E 0.23 deleterious(0.01) probably_damaging(0.947) TCGA-34-5929-01 3 108724082 108724082 C T MORC1 Silent p.A616A 0.50 TCGA-34-5929-01 3 124746086 124746086 C T HEG1 Silent p.R292R 0.23 TCGA-34-5929-01 3 141671428 141671428 C A TFDP2 Missense_Mutation p.R423L 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.489) TCGA-34-5929-01 3 159482463 159482463 G C IQCJ-SCHIP1 Missense_Mutation p.E175Q 0.45 tolerated_low_confidence(0.1) probably_damaging(0.979) TCGA-34-5929-01 3 170716076 170716076 A G SLC2A2 Missense_Mutation p.F427S 0.17 deleterious(0) probably_damaging(1) TCGA-34-5929-01 3 17550037 17550037 C T TBC1D5 Missense_Mutation p.R9K 0.57 deleterious_low_confidence(0.02) benign(0.103) TCGA-34-5929-01 3 195477899 195477899 G C MUC4 Silent p.V5244V 0.17 TCGA-34-5929-01 3 49713631 49713631 G A APEH Silent p.K195K 0.61 TCGA-34-5929-01 4 100057789 100057789 G T ADH4 Missense_Mutation p.T137N 0.58 deleterious(0) probably_damaging(0.999) TCGA-34-5929-01 4 129880756 129880756 T A SCLT1 Missense_Mutation p.Q349L 0.53 deleterious(0) probably_damaging(0.999) TCGA-34-5929-01 4 166929130 166929130 G C TLL1 Missense_Mutation p.E283Q 0.55 deleterious(0.01) benign(0.414) TCGA-34-5929-01 4 176561965 176561965 C G GPM6A Missense_Mutation p.G186A 0.58 tolerated(0.18) benign(0.002) TCGA-34-5929-01 4 177056260 177056260 G A WDR17 Missense_Mutation p.G391E 0.57 deleterious(0) probably_damaging(1) TCGA-34-5929-01 4 186299223 186299223 C G LRP2BP Intron 0.55 TCGA-34-5929-01 4 57907042 57907042 T C IGFBP7 Missense_Mutation p.Y178C 0.69 deleterious(0.01) probably_damaging(0.983) TCGA-34-5929-01 5 131553476 131553476 C A P4HA2 Missense_Mutation p.V50L 0.59 tolerated(0.11) benign(0.034) TCGA-34-5929-01 5 156592581 156592581 C A FAM71B Missense_Mutation p.S200I 0.54 deleterious(0.05) benign(0.069) TCGA-34-5929-01 5 156890110 156890110 C T NIPAL4 Missense_Mutation p.L78F 0.55 tolerated(0.09) benign(0.012) TCGA-34-5929-01 5 167673951 167673951 G A TENM2 Missense_Mutation p.D2003N 0.52 tolerated(0.13) possibly_damaging(0.83) TCGA-34-5929-01 5 176710800 176710800 G A NSD1 Missense_Mutation p.D2008N 0.57 deleterious(0) probably_damaging(1) TCGA-34-5929-01 5 176733505 176733505 G C PRELID1 Missense_Mutation p.E198D 0.68 deleterious(0.03) benign(0.237) TCGA-34-5929-01 5 1878381 1878381 G C IRX4 Missense_Mutation p.S421C 0.25 deleterious(0.05) benign(0.332) TCGA-34-5929-01 5 24535809 24535809 G T CDH10 Intron 0.51 TCGA-34-5929-01 5 38435307 38435307 G T EGFLAM Silent p.V745V 0.24 TCGA-34-5929-01 5 39202020 39202020 G A FYB Missense_Mutation p.P358L 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-34-5929-01 5 43382071 43382071 T A CCL28 Missense_Mutation p.K92I 0.28 deleterious(0) probably_damaging(0.972) TCGA-34-5929-01 5 43649385 43649385 G C NNT Silent p.L527L 0.23 TCGA-34-5929-01 5 98234111 98234111 C A CHD1 Missense_Mutation p.G405V 0.70 deleterious(0) benign(0.225) TCGA-34-5929-01 6 100988080 100988080 C G ASCC3 Missense_Mutation p.D1912H 0.40 deleterious(0) probably_damaging(0.999) TCGA-34-5929-01 6 110734551 110734551 T G DDO Missense_Mutation p.T67P 0.38 deleterious(0) possibly_damaging(0.826) TCGA-34-5929-01 6 112535159 112535159 C G LAMA4 Intron 0.45 TCGA-34-5929-01 6 123377054 123377054 C T CLVS2 Missense_Mutation p.T260I 0.35 tolerated(0.29) benign(0.003) TCGA-34-5929-01 6 131912582 131912582 T A MED23 Missense_Mutation p.Y1186F 0.38 tolerated(0.69) benign(0.003) TCGA-34-5929-01 6 132910358 132910358 C A TAAR5 Silent p.L156L 0.39 TCGA-34-5929-01 6 133783797 133783797 G C EYA4 Missense_Mutation p.G207R 0.39 deleterious(0) probably_damaging(0.945) TCGA-34-5929-01 6 135271123 135271123 T A ALDH8A1 Silent p.S23S 0.40 TCGA-34-5929-01 6 135271124 135271124 G T ALDH8A1 Nonsense_Mutation p.S23* 0.40 TCGA-34-5929-01 6 152576052 152576052 T A SYNE1 Missense_Mutation p.Q6478L 0.18 benign(0.367) TCGA-34-5929-01 6 25726721 25726721 C G HIST1H2AA Missense_Mutation p.R12P 0.37 tolerated_low_confidence(0.06) unknown(0) TCGA-34-5929-01 6 25777088 25777088 C A SLC17A4 Missense_Mutation p.S390Y 0.42 tolerated(0.06) probably_damaging(0.914) TCGA-34-5929-01 6 25918760 25918760 G T SLC17A2 Missense_Mutation p.L202I 0.35 tolerated(0.26) benign(0.111) TCGA-34-5929-01 6 31918167 31918167 C A CFB Silent p.I1039I 0.36 TCGA-34-5929-01 6 35392324 35392324 C G PPARD Silent p.L282L 0.35 TCGA-34-5929-01 6 41889294 41889294 G A BYSL 5'UTR 0.30 TCGA-34-5929-01 6 42236407 42236407 G A TRERF1 Nonsense_Mutation p.Q308* 0.38 TCGA-34-5929-01 6 43040698 43040698 C G KLC4 Missense_Mutation p.S560C 0.42 tolerated_low_confidence(0.1) probably_damaging(0.937) TCGA-34-5929-01 6 46826856 46826856 G A GPR116 Silent p.V928V 0.40 TCGA-34-5929-01 6 51491841 51491841 G T PKHD1 Silent p.R3913R 0.37 TCGA-34-5929-01 6 51909846 51909846 G C PKHD1 Missense_Mutation p.A878G 0.49 deleterious(0.01) benign(0.103) TCGA-34-5929-01 6 51936933 51936933 T C PKHD1 Missense_Mutation p.I194M 0.37 deleterious(0.01) benign(0.245) TCGA-34-5929-01 6 69759194 69759194 C T BAI3 Silent p.G763G 0.21 TCGA-34-5929-01 6 80228525 80228525 C T LCA5 Silent p.T29T 0.36 TCGA-34-5929-01 6 84862712 84862712 C T KIAA1009 Missense_Mutation p.V1061I 0.39 deleterious(0.04) benign(0.021) TCGA-34-5929-01 7 100807457 100807457 A C VGF Missense_Mutation p.L223R 0.36 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-34-5929-01 7 107816911 107816911 G C NRCAM Missense_Mutation p.Q1039E 0.32 tolerated(0.89) possibly_damaging(0.651) TCGA-34-5929-01 7 114298204 114298204 A T FOXP2 Silent p.P475P 0.42 TCGA-34-5929-01 7 120969747 120969747 C G WNT16 Silent p.A74A 0.34 TCGA-34-5929-01 7 121653575 121653575 C T PTPRZ1 Missense_Mutation p.S1492L 0.38 deleterious_low_confidence(0.01) benign(0.075) TCGA-34-5929-01 7 130067793 130067793 C G CEP41 Intron 0.27 TCGA-34-5929-01 7 142180766 142180766 G T TRBV6-5 Silent p.V31V 0.16 TCGA-34-5929-01 7 143747882 143747882 C A OR2A5 Missense_Mutation p.L130M 0.39 deleterious(0) probably_damaging(0.98) TCGA-34-5929-01 7 158719682 158719682 G A WDR60 Splice_Site p.X812_splice 0.38 TCGA-34-5929-01 7 35673301 35673301 C A HERPUD2 Nonstop_Mutation p.*407Lext*18 0.33 TCGA-34-5929-01 7 36373699 36373699 C A KIAA0895 Nonsense_Mutation p.E358* 0.26 TCGA-34-5929-01 7 47849098 47849098 G A PKD1L1 Silent p.Y2553Y 0.54 TCGA-34-5929-01 7 5540470 5540470 G A FBXL18 Missense_Mutation p.S477F 0.35 tolerated(0.14) benign(0.059) TCGA-34-5929-01 7 87190661 87190661 T C ABCB1 Missense_Mutation p.K249E 0.43 deleterious(0) benign(0.134) TCGA-34-5929-01 7 92027579 92027579 A G ANKIB1 Silent p.L862L 0.38 TCGA-34-5929-01 8 100729551 100729551 G T VPS13B Nonsense_Mutation p.E2228* 0.38 TCGA-34-5929-01 8 100729569 100729569 A T VPS13B Missense_Mutation p.I2234L 0.39 tolerated(0.61) benign(0.031) TCGA-34-5929-01 8 100732672 100732672 G A VPS13B Missense_Mutation p.E2278K 0.36 tolerated(0.64) benign(0.001) TCGA-34-5929-01 8 10468059 10468059 G A RP1L1 Silent p.D1183D 0.34 TCGA-34-5929-01 8 110471938 110471938 C A PKHD1L1 Silent p.L2373L 0.32 TCGA-34-5929-01 8 114448905 114448905 C A CSMD3 Splice_Site p.X60_splice 0.33 TCGA-34-5929-01 8 135524749 135524749 C A ZFAT Silent p.A1110A 0.30 TCGA-34-5929-01 8 1616589 1616589 C A DLGAP2 Silent p.T555T 0.37 TCGA-34-5929-01 8 21937956 21937956 G C DMTN Missense_Mutation p.E312Q 0.30 tolerated(0.58) benign(0.147) TCGA-34-5929-01 8 22414364 22414364 C T SORBS3 Silent p.V119V 0.42 TCGA-34-5929-01 8 67476961 67476961 T C MYBL1 Missense_Mutation p.S744G 0.41 tolerated(1) unknown(0) TCGA-34-5929-01 8 77767214 77767214 C G ZFHX4 Missense_Mutation p.A2686G 0.31 probably_damaging(0.987) TCGA-34-5929-01 8 77767221 77767221 G T ZFHX4 Silent p.S2688S 0.33 TCGA-34-5929-01 8 89179973 89179973 G T MMP16 Missense_Mutation p.P212T 0.33 deleterious(0) probably_damaging(0.96) TCGA-34-5929-01 8 99101844 99101844 C G C8orf47 Missense_Mutation p.A200G 0.26 tolerated(0.28) benign(0.02) TCGA-34-5929-01 9 114090514 114090514 G C OR2K2 Missense_Mutation p.S67C 0.60 deleterious(0) probably_damaging(0.954) TCGA-34-5929-01 9 115336586 115336586 G A KIAA1958 Missense_Mutation p.D76N 0.26 tolerated(0.06) possibly_damaging(0.892) TCGA-34-5929-01 9 120474964 120474964 G C TLR4 Missense_Mutation p.K186N 0.43 tolerated(0.36) benign(0.024) TCGA-34-5929-01 9 126136902 126136902 T A CRB2 Missense_Mutation p.L1145H 0.54 deleterious(0.04) probably_damaging(0.941) TCGA-34-5929-01 9 14842451 14842451 T A FREM1 Missense_Mutation p.E534V 0.55 deleterious(0) probably_damaging(0.997) TCGA-34-5929-01 9 21206676 21206676 G T IFNA10 Missense_Mutation p.L141M 0.60 tolerated(0.08) possibly_damaging(0.558) TCGA-34-5929-01 9 8528747 8528747 C A PTPRD Missense_Mutation p.D129Y 0.60 deleterious(0) probably_damaging(0.999) TCGA-34-5929-01 X 100265657 100265657 G C TRMT2B Silent p.G476G 0.43 TCGA-34-5929-01 X 101396063 101396063 C T TCEAL6 Missense_Mutation p.E81K 0.43 tolerated(0.08) possibly_damaging(0.46) TCGA-34-5929-01 X 107976320 107976320 T C IRS4 Silent p.P1085P 0.33 TCGA-34-5929-01 X 117540953 117540953 G T WDR44 Missense_Mutation p.Q499H 0.37 tolerated(0.12) benign(0.005) TCGA-34-5929-01 X 119694097 119694097 T A CUL4B Missense_Mutation p.T151S 0.44 tolerated(0.66) benign(0.001) TCGA-34-5929-01 X 125298856 125298856 G T DCAF12L2 Missense_Mutation p.T351K 0.36 deleterious(0.04) possibly_damaging(0.675) TCGA-34-5929-01 X 128724306 128724306 G T OCRL 3'UTR 0.32 TCGA-34-5929-01 X 129629150 129629150 G A RP1-274L7.1 RNA 0.38 TCGA-34-5929-01 X 13337109 13337109 T C ATXN3L Silent p.T315T 0.42 TCGA-34-5929-01 X 134987551 134987551 C G SAGE1 Missense_Mutation p.H152D 0.24 tolerated(0.16) possibly_damaging(0.54) TCGA-34-5929-01 X 135429199 135429199 C T GPR112 Missense_Mutation p.H1112Y 0.37 deleterious(0) benign(0.023) TCGA-34-5929-01 X 146307450 146307450 G T MIR513A2 RNA 0.48 TCGA-34-5929-01 X 148586591 148586591 G C IDS Missense_Mutation p.S26C 0.26 tolerated(0.15) benign(0.003) TCGA-34-5929-01 X 153628886 153628886 C T RPL10 Silent p.S137S 0.36 TCGA-34-5929-01 X 153633251 153633251 C G DNASE1L1 Missense_Mutation p.D77H 0.42 deleterious(0.03) possibly_damaging(0.513) TCGA-34-5929-01 X 17743568 17743568 G C NHS Missense_Mutation p.E427Q 0.36 tolerated(0.15) probably_damaging(0.997) TCGA-34-5929-01 X 18189190 18189190 T A BEND2 Missense_Mutation p.S706C 0.36 deleterious(0) probably_damaging(0.999) TCGA-34-5929-01 X 18622806 18622806 C G CDKL5 Missense_Mutation p.P588A 0.36 tolerated_low_confidence(0.06) possibly_damaging(0.539) TCGA-34-5929-01 X 18915420 18915420 G T PHKA2 Missense_Mutation p.T1048K 0.28 tolerated(0.87) benign(0.031) TCGA-34-5929-01 X 19371288 19371288 G T PDHA1 Silent p.A207A 0.38 TCGA-34-5929-01 X 19398259 19398259 C T MAP3K15 Silent p.E856E 0.32 TCGA-34-5929-01 X 24733279 24733279 G T POLA1 Missense_Mutation p.D156Y 0.38 deleterious(0) probably_damaging(1) TCGA-34-5929-01 X 30237172 30237172 G T MAGEB2 Missense_Mutation p.G159C 0.43 tolerated(0.15) benign(0.001) TCGA-34-5929-01 X 32328381 32328381 C T DMD Missense_Mutation p.E1979K 0.42 possibly_damaging(0.486) TCGA-34-5929-01 X 38546900 38546900 C A TSPAN7 Silent p.A243A 0.33 TCGA-34-5929-01 X 39922016 39922016 C G BCOR Missense_Mutation p.E1386Q 0.26 deleterious(0.01) benign(0.131) TCGA-34-5929-01 X 41056655 41056655 G C USP9X Missense_Mutation p.E1424D 0.27 tolerated(0.32) benign(0.004) TCGA-34-5929-01 X 41064718 41064718 G C USP9X Missense_Mutation p.V1663L 0.36 deleterious(0.01) probably_damaging(0.97) TCGA-34-5929-01 X 49055482 49055482 C A SYP Missense_Mutation p.G16V 0.36 tolerated(0.47) benign(0.021) TCGA-34-5929-01 X 54565501 54565501 G A GNL3L Silent p.K16K 0.30 TCGA-34-5929-01 X 54565513 54565513 G T GNL3L Missense_Mutation p.K20N 0.34 deleterious_low_confidence(0.01) benign(0.193) TCGA-34-5929-01 X 54784647 54784647 G T ITIH6 Silent p.T620T 0.31 TCGA-34-5929-01 X 55102489 55102489 G C PAGE2B Silent p.V5V 0.29 TCGA-34-5929-01 X 63412739 63412739 C A AMER1 Missense_Mutation p.C143F 0.20 tolerated(0.73) benign(0.005) TCGA-34-5929-01 X 70148757 70148757 C A SLC7A3 Missense_Mutation p.V156L 0.49 tolerated(0.44) benign(0.055) TCGA-34-5929-01 X 70321970 70321970 T A FOXO4 3'UTR 0.40 TCGA-34-5929-01 X 70602911 70602911 A C TAF1 Missense_Mutation p.Q635P 0.36 tolerated(0.16) possibly_damaging(0.653) TCGA-34-5929-01 X 71822070 71822070 C T PHKA1 Missense_Mutation p.A991T 0.31 tolerated(0.44) benign(0.027) TCGA-34-5929-01 X 73061342 73061342 T G XIST RNA 0.29 TCGA-34-5929-01 X 78618459 78618459 T - ITM2A Frame_Shift_Del p.I141Lfs*9 0.34 TCGA-34-5929-01 X 91090821 91090821 C A PCDH11X Nonsense_Mutation p.C106* 0.29 TCGA-34-5929-01 X 91090822 91090822 T A PCDH11X Missense_Mutation p.F107I 0.28 tolerated(0.07) probably_damaging(0.983) TCGA-34-5929-01 X 91642836 91642836 C T PCDH11X Missense_Mutation p.H1083Y 0.36 tolerated(0.14) benign(0.392) TCGA-34-7107-01 10 118314711 118314711 G T PNLIP Missense_Mutation p.C198F 0.43 tolerated(0.58) benign(0.038) TCGA-34-7107-01 10 120810150 120810150 C A EIF3A Nonsense_Mutation p.E786* 0.25 TCGA-34-7107-01 10 17142227 17142227 G A CUBN Silent p.I514I 0.47 TCGA-34-7107-01 10 31137660 31137660 A T ZNF438 Missense_Mutation p.H558Q 0.39 deleterious(0) probably_damaging(1) TCGA-34-7107-01 10 3172068 3172068 G A PFKP Missense_Mutation p.E581K 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-34-7107-01 10 45799345 45799345 T C OR13A1 Missense_Mutation p.I176V 0.46 tolerated(1) benign(0.023) TCGA-34-7107-01 10 46999448 46999448 G T GPRIN2 Missense_Mutation p.G190W 0.12 deleterious(0) probably_damaging(0.989) TCGA-34-7107-01 10 60047319 60047319 A T CISD1 Splice_Site p.X80_splice 0.36 TCGA-34-7107-01 10 67748487 67748487 G C CTNNA3 Nonsense_Mutation p.S743* 0.47 TCGA-34-7107-01 10 68526157 68526157 T A CTNNA3 Silent p.I382I 0.30 TCGA-34-7107-01 10 70406005 70406005 G A TET1 Silent p.R1173R 0.44 TCGA-34-7107-01 11 113857575 113857575 G - HTR3A Frame_Shift_Del p.L354Wfs*2 0.23 TCGA-34-7107-01 11 120702686 120702686 G A GRIK4 Missense_Mutation p.A213T 0.19 tolerated(0.39) benign(0.137) TCGA-34-7107-01 11 123466745 123466745 G A GRAMD1B Silent p.K180K 0.43 TCGA-34-7107-01 11 123909639 123909639 G T OR10G7 Missense_Mutation p.P24T 0.12 tolerated(0.48) benign(0) TCGA-34-7107-01 11 124440343 124440343 G T OR8A1 Missense_Mutation p.A127S 0.24 tolerated(0.73) benign(0.41) TCGA-34-7107-01 11 124440711 124440711 G A OR8A1 Silent p.G249G 0.18 TCGA-34-7107-01 11 14913564 14913564 T C CYP2R1 Missense_Mutation p.H63R 0.25 deleterious(0.03) probably_damaging(0.955) TCGA-34-7107-01 11 14991517 14991517 C T CALCA Missense_Mutation p.S64N 0.48 tolerated(0.52) benign(0.322) TCGA-34-7107-01 11 18955798 18955798 G A MRGPRX1 Silent p.F178F 0.08 TCGA-34-7107-01 11 32413577 32413577 C T WT1 Missense_Mutation p.R458Q 0.16 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-34-7107-01 11 36595103 36595103 C T RAG1 Silent p.A83A 0.34 TCGA-34-7107-01 11 4608587 4608587 C A OR52I2 Missense_Mutation p.A182D 0.40 deleterious(0) probably_damaging(0.984) TCGA-34-7107-01 11 5172716 5172716 T C OR52A1 Missense_Mutation p.Y295C 0.26 deleterious(0.01) possibly_damaging(0.799) TCGA-34-7107-01 11 56143441 56143441 A G OR8U1 Silent p.L114L 0.45 TCGA-34-7107-01 11 56258719 56258719 C T OR5M8 Missense_Mutation p.G43D 0.20 deleterious(0) probably_damaging(0.913) TCGA-34-7107-01 11 57971312 57971312 C A OR1S2 Missense_Mutation p.M114I 0.49 tolerated(0.06) benign(0.175) TCGA-34-7107-01 11 74717585 74717585 G A NEU3 3'UTR 0.17 TCGA-34-7107-01 11 75277937 75277937 C T SERPINH1 Silent p.T181T 0.23 TCGA-34-7107-01 11 94906390 94906390 C A SESN3 3'UTR 0.18 TCGA-34-7107-01 12 100166723 100166723 C T ANKS1B Missense_Mutation p.G369R 0.31 deleterious(0.02) benign(0.005) TCGA-34-7107-01 12 104160111 104160111 G A STAB2 Silent p.L2551L 0.30 TCGA-34-7107-01 12 11138538 11138538 T C TAS2R50 3'UTR 0.37 TCGA-34-7107-01 12 124228873 124228873 C A ATP6V0A2 Missense_Mutation p.Q439K 0.31 tolerated(1) benign(0.003) TCGA-34-7107-01 12 129559521 129559521 C T TMEM132D Silent p.L733L 0.25 TCGA-34-7107-01 12 20852566 20852566 C T SLCO1C1 Missense_Mutation p.P19L 0.17 deleterious_low_confidence(0.01) benign(0.003) TCGA-34-7107-01 12 39695478 39695478 C G KIF21A Missense_Mutation p.V1579L 0.38 tolerated(0.36) benign(0.052) TCGA-34-7107-01 12 40441905 40441905 A T SLC2A13 Missense_Mutation p.F222I 0.46 tolerated(1) benign(0.01) TCGA-34-7107-01 12 49427276 49427276 G A KMT2D Nonsense_Mutation p.Q3738* 0.50 TCGA-34-7107-01 12 55725713 55725713 A T OR6C3 Nonsense_Mutation p.R77* 0.48 TCGA-34-7107-01 12 56638508 56638508 C G ANKRD52 Missense_Mutation p.V884L 0.41 tolerated(0.06) possibly_damaging(0.511) TCGA-34-7107-01 12 57571295 57571295 C T LRP1 Missense_Mutation p.R1428W 0.14 possibly_damaging(0.901) TCGA-34-7107-01 12 57625535 57625535 G A SHMT2 Silent p.L117L 0.38 TCGA-34-7107-01 12 66703727 66703727 A T HELB Missense_Mutation p.D340V 0.38 deleterious(0) probably_damaging(0.959) TCGA-34-7107-01 12 70986143 70986143 C A PTPRB Missense_Mutation p.V567F 0.33 deleterious(0.02) benign(0.123) TCGA-34-7107-01 12 71148398 71148398 T C PTPRR Intron 0.16 TCGA-34-7107-01 12 80730196 80730196 G T OTOGL Missense_Mutation p.R1526L 0.38 deleterious(0.03) benign(0.103) TCGA-34-7107-01 12 8800703 8800703 C T MFAP5 Missense_Mutation p.R169K 0.10 tolerated(0.21) benign(0.008) TCGA-34-7107-01 12 94243874 94243874 A G CRADD Missense_Mutation p.T143A 0.20 tolerated(0.74) benign(0.003) TCGA-34-7107-01 13 113556664 113556664 G C MCF2L Missense_Mutation p.E50Q 0.39 tolerated_low_confidence(0.29) benign(0.001) TCGA-34-7107-01 13 25671092 25671092 T C PABPC3 Silent p.N252N 0.09 TCGA-34-7107-01 13 25671188 25671188 G A PABPC3 Silent p.K284K 0.11 TCGA-34-7107-01 13 38158958 38158958 C A POSTN Missense_Mutation p.G335C 0.50 deleterious(0) probably_damaging(1) TCGA-34-7107-01 14 100317313 100317313 G T EML1 Missense_Mutation p.R64L 0.18 deleterious(0) possibly_damaging(0.889) TCGA-34-7107-01 14 101348370 101348370 T A RTL1 Missense_Mutation p.Q919L 0.17 tolerated(0.33) benign(0) TCGA-34-7107-01 14 105686423 105686423 C A BRF1 Missense_Mutation p.D454Y 0.30 deleterious(0) probably_damaging(0.996) TCGA-34-7107-01 14 106539124 106539124 C G IGHV1-8 Silent p.L102L 0.27 TCGA-34-7107-01 14 19378390 19378390 G T OR11H12 Missense_Mutation p.C266F 0.53 tolerated(1) benign(0) TCGA-34-7107-01 14 20711106 20711106 T A OR11H4 Missense_Mutation p.N52K 0.56 deleterious(0) probably_damaging(1) TCGA-34-7107-01 14 22090515 22090515 T C TRAV1-1 Missense_Mutation p.Y41H 0.45 deleterious(0) probably_damaging(0.987) TCGA-34-7107-01 14 22676017 22676017 G C TRAV34 Missense_Mutation p.G110A 0.58 tolerated(1) benign(0.002) TCGA-34-7107-01 14 30066935 30066935 C A PRKD1 Silent p.R732R 0.31 TCGA-34-7107-01 14 55819116 55819116 C T FBXO34 Missense_Mutation p.R670W 0.23 deleterious(0) probably_damaging(0.989) TCGA-34-7107-01 14 58917366 58917366 G T KIAA0586 Missense_Mutation p.R397L 0.36 deleterious(0) probably_damaging(0.999) TCGA-34-7107-01 14 75078380 75078380 G A LTBP2 Missense_Mutation p.P90S 0.50 tolerated(0.1) benign(0.195) TCGA-34-7107-01 14 80669169 80669169 G A DIO2 Missense_Mutation p.R265C 0.31 deleterious(0) probably_damaging(1) TCGA-34-7107-01 14 81743298 81743298 T G STON2 Missense_Mutation p.H786P 0.29 deleterious(0) probably_damaging(0.983) TCGA-34-7107-01 15 34113734 34113734 C - RYR3 Frame_Shift_Del p.M3644Wfs*6 0.41 TCGA-34-7107-01 15 48518762 48518762 C A SLC12A1 Intron 0.55 TCGA-34-7107-01 15 54860050 54860050 G A UNC13C Missense_Mutation p.S2004N 0.48 deleterious_low_confidence(0.01) possibly_damaging(0.826) TCGA-34-7107-01 15 60297314 60297314 G C FOXB1 Missense_Mutation p.R51T 0.55 deleterious(0) probably_damaging(0.997) TCGA-34-7107-01 15 83710505 83710505 C T BTBD1 Silent p.L279L 0.59 TCGA-34-7107-01 15 90274702 90274702 G A WDR93 Silent p.A413A 0.63 TCGA-34-7107-01 16 31154711 31154711 G A PRSS36 Missense_Mutation p.A351V 0.09 tolerated(0.2) benign(0.034) TCGA-34-7107-01 16 32077575 32077575 G T IGHV3OR16-9 Missense_Mutation p.V64L 0.14 deleterious_low_confidence(0.01) benign(0.308) TCGA-34-7107-01 16 3294585 3294585 A C MEFV Silent p.A538A 0.38 TCGA-34-7107-01 16 3304667 3304667 G A MEFV Missense_Mutation p.P134L 0.43 tolerated(0.56) benign(0.023) TCGA-34-7107-01 16 47684475 47684475 A G PHKB Silent p.K606K 0.40 TCGA-34-7107-01 16 4776675 4776675 G A ANKS3 Missense_Mutation p.A159V 0.38 deleterious(0.01) probably_damaging(1) TCGA-34-7107-01 16 48577111 48577111 C A N4BP1 Missense_Mutation p.V799F 0.23 tolerated(0.7) benign(0.004) TCGA-34-7107-01 16 50328648 50328648 G T ADCY7 Missense_Mutation p.D312Y 0.28 deleterious(0) probably_damaging(1) TCGA-34-7107-01 16 52484326 52484326 G A TOX3 Nonsense_Mutation p.Q181* 0.16 TCGA-34-7107-01 16 53296928 53296928 A T CHD9 Silent p.T1413T 0.28 TCGA-34-7107-01 16 683175 683175 C T WFIKKN1 Silent p.P255P 0.29 TCGA-34-7107-01 16 68324429 68324429 C A SLC7A6 Silent p.I260I 0.32 TCGA-34-7107-01 16 69973915 69973915 C G WWP2 3'UTR 0.27 TCGA-34-7107-01 16 74501717 74501717 T C GLG1 Silent p.L822L 0.33 TCGA-34-7107-01 16 88071617 88071617 G T BANP Missense_Mutation p.Q426H 0.23 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-34-7107-01 16 89294258 89294258 C G ZNF778 Missense_Mutation p.T493S 0.43 tolerated(0.54) benign(0.03) TCGA-34-7107-01 17 10210274 10210274 G A MYH13 Silent p.A1759A 0.12 TCGA-34-7107-01 17 10304453 10304453 T A MYH8 Missense_Mutation p.K1055M 0.38 deleterious(0) probably_damaging(0.966) TCGA-34-7107-01 17 10543535 10543535 G C MYH3 Silent p.R820R 0.18 TCGA-34-7107-01 17 26687786 26687786 C T TMEM199 Silent p.T149T 0.35 TCGA-34-7107-01 17 32612779 32612779 C G CCL11 5'UTR 0.21 TCGA-34-7107-01 17 3844468 3844468 C T ATP2A3 Missense_Mutation p.V633M 0.44 deleterious(0.03) probably_damaging(1) TCGA-34-7107-01 17 38519826 38519826 T C CTD-2267D19.3 Missense_Mutation p.V213A 0.50 tolerated_low_confidence(0.05) benign(0.294) TCGA-34-7107-01 17 39019786 39019786 C A KRT12 Missense_Mutation p.R349L 0.50 deleterious(0) possibly_damaging(0.882) TCGA-34-7107-01 17 39985136 39985136 C G NT5C3B Missense_Mutation p.G158A 0.21 deleterious(0) probably_damaging(1) TCGA-34-7107-01 17 41244844 41244844 C T BRCA1 Missense_Mutation p.E902K 0.50 tolerated(0.11) benign(0.233) TCGA-34-7107-01 17 42807299 42807299 A G DBF4B Silent p.E84E 0.21 TCGA-34-7107-01 17 44074030 44074030 G C MAPT Missense_Mutation p.K609N 0.39 deleterious(0.01) possibly_damaging(0.882) TCGA-34-7107-01 17 4428392 4428392 C A SPNS2 Silent p.G159G 0.13 TCGA-34-7107-01 17 51900564 51900564 C A KIF2B Missense_Mutation p.T57K 0.31 deleterious(0.02) possibly_damaging(0.694) TCGA-34-7107-01 17 649567 649567 G A GEMIN4 Silent p.L572L 0.45 TCGA-34-7107-01 17 67170495 67170495 A G ABCA10 Missense_Mutation p.L1030P 0.26 deleterious(0) probably_damaging(0.987) TCGA-34-7107-01 17 72947646 72947646 C A HID1 3'UTR 0.42 TCGA-34-7107-01 17 7578457 7578457 C A TP53 Missense_Mutation p.R158L 0.51 deleterious(0) probably_damaging(0.986) TCGA-34-7107-01 17 7578467 7578467 T G TP53 Missense_Mutation p.T155P 0.23 deleterious(0.01) possibly_damaging(0.888) TCGA-34-7107-01 17 76510894 76510894 G A DNAH17 Missense_Mutation p.R1355W 0.42 probably_damaging(0.999) TCGA-34-7107-01 17 8138431 8138431 C T CTC1 Missense_Mutation p.R460H 0.18 tolerated(0.44) benign(0.033) TCGA-34-7107-01 18 15316733 15316733 A C RNU6-721P 3'Flank 0.41 TCGA-34-7107-01 18 5290848 5290848 C A ZBTB14 3'UTR 0.61 TCGA-34-7107-01 18 5423443 5423443 G T EPB41L3 Missense_Mutation p.R425S 0.74 deleterious(0) probably_damaging(1) TCGA-34-7107-01 18 61471805 61471805 C A SERPINB7 Missense_Mutation p.P360Q 0.62 deleterious(0) probably_damaging(1) TCGA-34-7107-01 18 77513795 77513795 G - CTDP1 3'UTR 0.35 TCGA-34-7107-01 19 1050968 1050968 C T ABCA7 Silent p.I867I 0.58 TCGA-34-7107-01 19 12759967 12759967 C A MAN2B1 Missense_Mutation p.G807C 0.29 deleterious(0) probably_damaging(1) TCGA-34-7107-01 19 13988559 13988559 G A NANOS3 Missense_Mutation p.R166Q 0.38 deleterious_low_confidence(0.03) unknown(0) TCGA-34-7107-01 19 13988560 13988560 A G NANOS3 Silent p.R166R 0.40 TCGA-34-7107-01 19 15566990 15566990 G A RASAL3 Missense_Mutation p.S549L 0.10 tolerated(0.54) benign(0.002) TCGA-34-7107-01 19 17036149 17036149 T C CPAMD8 Missense_Mutation p.N1182S 0.45 tolerated(0.4) benign(0.008) TCGA-34-7107-01 19 19653760 19653760 C T CILP2 Missense_Mutation p.P319L 0.53 deleterious(0) probably_damaging(0.997) TCGA-34-7107-01 19 2109200 2109200 G T AP3D1 Silent p.A1119A 0.23 TCGA-34-7107-01 19 22836180 22836180 G T ZNF492 5'UTR 0.22 TCGA-34-7107-01 19 36349412 36349412 C T KIRREL2 Missense_Mutation p.A105V 0.45 deleterious(0) probably_damaging(0.964) TCGA-34-7107-01 19 38860691 38860691 T A CATSPERG Missense_Mutation p.L1034M 0.23 tolerated(0.15) possibly_damaging(0.82) TCGA-34-7107-01 19 38885027 38885027 G - SPRED3 Intron 0.22 TCGA-34-7107-01 19 40421623 40421623 C T FCGBP Silent p.A766A 0.55 TCGA-34-7107-01 19 40747909 40747909 C T AKT2 Missense_Mutation p.R170Q 0.43 tolerated(0.07) possibly_damaging(0.48) TCGA-34-7107-01 19 42314016 42314016 C A CEACAM3 Missense_Mutation p.R186S 0.48 tolerated(0.42) benign(0.003) TCGA-34-7107-01 19 51850209 51850209 A G ETFB Missense_Mutation p.V272A 0.55 deleterious_low_confidence(0) possibly_damaging(0.871) TCGA-34-7107-01 19 52447728 52447728 C T ZNF613 Nonsense_Mutation p.Q198* 0.67 TCGA-34-7107-01 19 53473579 53473579 G A ZNF702P RNA 0.62 TCGA-34-7107-01 19 54169998 54169998 T A MIR512-1 RNA 0.06 TCGA-34-7107-01 19 58198474 58198474 G T ZNF551 Missense_Mutation p.K277N 0.78 tolerated(0.08) possibly_damaging(0.516) TCGA-34-7107-01 19 58420331 58420331 T A ZNF417 Missense_Mutation p.R439W 0.48 deleterious(0.04) benign(0.056) TCGA-34-7107-01 19 58983520 58983520 G A ZNF324 Silent p.%3D 0.58 TCGA-34-7107-01 19 7806941 7806941 C T CD209 3'UTR 0.50 TCGA-34-7107-01 19 7999040 7999040 C T TIMM44 Silent p.S159S 0.10 TCGA-34-7107-01 1 109479941 109479941 G A CLCC1 Missense_Mutation p.R381W 0.65 tolerated(0.19) benign(0.014) TCGA-34-7107-01 1 11580748 11580748 G C PTCHD2 Silent p.L735L 0.70 TCGA-34-7107-01 1 144882712 144882712 T C PDE4DIP Missense_Mutation p.R1103G 0.20 deleterious(0.05) probably_damaging(0.999) TCGA-34-7107-01 1 149398870 149398870 G C HIST2H3PS2 3'Flank 0.28 TCGA-34-7107-01 1 152329211 152329211 T C FLG2 Missense_Mutation p.S351G 0.11 unknown(0) TCGA-34-7107-01 1 155271093 155271093 G C PKLR Missense_Mutation p.P32A 0.29 tolerated_low_confidence(0.08) probably_damaging(0.994) TCGA-34-7107-01 1 158152695 158152696 - C CD1D Frame_Shift_Ins p.S214Qfs*29 0.30 TCGA-34-7107-01 1 158326257 158326257 G C CD1E Intron 0.27 TCGA-34-7107-01 1 158576464 158576464 C T OR10Z1 Missense_Mutation p.P79L 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-34-7107-01 1 158614085 158614085 C T SPTA1 Silent p.L1432L 0.34 TCGA-34-7107-01 1 158617445 158617445 C T SPTA1 Silent p.L1260L 0.38 TCGA-34-7107-01 1 160456965 160456965 C T SLAMF6 Missense_Mutation p.E294K 0.32 tolerated(0.44) benign(0.113) TCGA-34-7107-01 1 160811395 160811395 T C CD244 Missense_Mutation p.T120A 0.29 tolerated(0.42) benign(0.007) TCGA-34-7107-01 1 168215840 168215840 G T SFT2D2 3'UTR 0.29 TCGA-34-7107-01 1 181731766 181731766 C T CACNA1E Silent p.I1554I 0.16 TCGA-34-7107-01 1 182642042 182642042 C G RGS8 5'UTR 0.37 TCGA-34-7107-01 1 190423993 190423993 C T BRINP3 Missense_Mutation p.E10K 0.17 tolerated_low_confidence(0.55) benign(0.003) TCGA-34-7107-01 1 197396938 197396938 A G CRB1 Missense_Mutation p.D828G 0.31 deleterious(0.03) benign(0.094) TCGA-34-7107-01 1 198725191 198725191 C G PTPRC Missense_Mutation p.P1268A 0.30 tolerated(0.63) benign(0.004) TCGA-34-7107-01 1 210411481 210411481 G C SERTAD4 Splice_Site p.X59_splice 0.42 TCGA-34-7107-01 1 210856813 210856813 A G KCNH1 Missense_Mutation p.L927P 0.42 tolerated_low_confidence(0.11) benign(0.009) TCGA-34-7107-01 1 222889134 222889134 A C BROX Missense_Mutation p.K31N 0.39 tolerated(0.06) possibly_damaging(0.644) TCGA-34-7107-01 1 226589916 226589916 T A PARP1 Silent p.T95T 0.36 TCGA-34-7107-01 1 235505352 235505352 G A GGPS1 Silent p.L56L 0.32 TCGA-34-7107-01 1 237804269 237804269 T G RYR2 Missense_Mutation p.I2396M 0.07 probably_damaging(0.998) TCGA-34-7107-01 1 243354475 243354475 T C CEP170 Missense_Mutation p.D318G 0.25 deleterious(0) probably_damaging(0.916) TCGA-34-7107-01 1 243375246 243375246 C A CEP170 Missense_Mutation p.R72S 0.32 deleterious(0) probably_damaging(0.999) TCGA-34-7107-01 1 247978282 247978282 G - OR14A16 Frame_Shift_Del p.T251Lfs*7 0.30 TCGA-34-7107-01 1 33233668 33233668 C T KIAA1522 Nonsense_Mutation p.Q138* 0.16 TCGA-34-7107-01 1 33613298 33613298 G T TRIM62 Missense_Mutation p.T303K 0.56 deleterious(0) probably_damaging(1) TCGA-34-7107-01 1 8416292 8416292 C - RERE Frame_Shift_Del p.V1452Ffs*8 0.36 TCGA-34-7107-01 20 20484032 20484032 C G RALGAPA2 Missense_Mutation p.R1724P 0.14 deleterious(0) probably_damaging(0.996) TCGA-34-7107-01 20 22563652 22563652 G C FOXA2 Silent p.G76G 0.63 TCGA-34-7107-01 20 31814247 31814247 A G BPIFA3 Missense_Mutation p.N191S 0.61 tolerated(0.37) possibly_damaging(0.536) TCGA-34-7107-01 20 3211409 3211409 C T SLC4A11 Silent p.L460L 0.18 TCGA-34-7107-01 20 43550285 43550285 G T PABPC1L Silent p.A263A 0.24 TCGA-34-7107-01 20 43955854 43955854 C T SDC4 3'UTR 0.36 TCGA-34-7107-01 20 44472325 44472325 C T ACOT8 Missense_Mutation p.A228T 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-34-7107-01 20 9496928 9496928 C T LAMP5 Missense_Mutation p.P132L 0.40 tolerated(0.31) benign(0.005) TCGA-34-7107-01 21 22910323 22910323 G T NCAM2 3'UTR 0.59 TCGA-34-7107-01 21 32624465 32624465 C G TIAM1 Missense_Mutation p.G335A 0.56 tolerated(0.07) probably_damaging(0.953) TCGA-34-7107-01 22 22843654 22843654 C T ZNF280B Missense_Mutation p.D24N 0.38 tolerated(0.2) benign(0.01) TCGA-34-7107-01 22 26422656 26422656 C A MYO18B Nonsense_Mutation p.S2239* 0.55 TCGA-34-7107-01 22 26849158 26849158 T C HPS4 3'UTR 0.29 TCGA-34-7107-01 22 31536274 31536274 C A PLA2G3 Missense_Mutation p.A23S 0.55 tolerated(0.16) benign(0.231) TCGA-34-7107-01 22 32614612 32614612 C T SLC5A4 Silent p.L623L 0.13 TCGA-34-7107-01 22 39441095 39441095 G C APOBEC3F Silent p.L107L 0.26 TCGA-34-7107-01 22 47060014 47060014 C T GRAMD4 Silent p.T239T 0.29 TCGA-34-7107-01 22 50487726 50487726 T C TTLL8 Silent p.E108E 0.46 TCGA-34-7107-01 2 103067310 103067310 A - IL18RAP Frame_Shift_Del p.K406Rfs*23 0.30 TCGA-34-7107-01 2 113405026 113405026 G A SLC20A1 Missense_Mutation p.E154K 0.07 tolerated(0.2) benign(0.044) TCGA-34-7107-01 2 119604483 119604483 C G EN1 Silent p.A87A 0.37 TCGA-34-7107-01 2 131520137 131520137 C - AMER3 Frame_Shift_Del p.H165Tfs*101 0.29 TCGA-34-7107-01 2 133542342 133542342 A G NCKAP5 Missense_Mutation p.F681S 0.15 deleterious(0) probably_damaging(0.985) TCGA-34-7107-01 2 141128300 141128300 C T LRP1B Missense_Mutation p.D3663N 0.03 possibly_damaging(0.822) TCGA-34-7107-01 2 141202230 141202230 G - LRP1B Frame_Shift_Del p.P3359Qfs*54 0.21 TCGA-34-7107-01 2 141214035 141214035 T A LRP1B Missense_Mutation p.T3318S 0.41 possibly_damaging(0.621) TCGA-34-7107-01 2 152977235 152977235 G A STAM2 Silent p.Y477Y 0.31 TCGA-34-7107-01 2 157406203 157406203 G C GPD2 Missense_Mutation p.V249L 0.44 deleterious(0.01) probably_damaging(0.942) TCGA-34-7107-01 2 163279965 163279965 G C KCNH7 Missense_Mutation p.Q679E 0.38 deleterious(0.05) probably_damaging(0.968) TCGA-34-7107-01 2 165972071 165972071 G T SCN3A Silent p.T1136T 0.33 TCGA-34-7107-01 2 170048474 170048474 G A LRP2 Missense_Mutation p.P2967L 0.34 possibly_damaging(0.633) TCGA-34-7107-01 2 17698993 17698993 A T RAD51AP2 Silent p.S230S 0.24 TCGA-34-7107-01 2 179325092 179325092 G A DFNB59 Missense_Mutation p.V229M 0.61 tolerated(0.28) benign(0.254) TCGA-34-7107-01 2 179440025 179440025 C T TTN Missense_Mutation p.G23612R 0.73 TCGA-34-7107-01 2 179576920 179576920 G T TTN Missense_Mutation p.P9213T 0.15 TCGA-34-7107-01 2 179613706 179613706 T C TTN Intron 0.10 TCGA-34-7107-01 2 179621516 179621516 G A TTN Silent p.L3563L 0.20 TCGA-34-7107-01 2 185802358 185802358 G A ZNF804A Missense_Mutation p.M745I 0.12 tolerated(0.44) benign(0.018) TCGA-34-7107-01 2 185803145 185803145 A G ZNF804A Missense_Mutation p.K1008E 0.23 deleterious(0) probably_damaging(0.956) TCGA-34-7107-01 2 1907048 1907048 C T MYT1L Silent p.K610K 0.54 TCGA-34-7107-01 2 196837081 196837081 G C DNAH7 Missense_Mutation p.A648G 0.58 tolerated(0.19) benign(0) TCGA-34-7107-01 2 204320294 204320294 A G RAPH1 Missense_Mutation p.C390R 0.54 possibly_damaging(0.759) TCGA-34-7107-01 2 211503916 211503916 C A CPS1 Missense_Mutation p.L964I 0.60 deleterious(0) probably_damaging(0.999) TCGA-34-7107-01 2 216965109 216965109 G C TMEM169 Silent p.R246R 0.58 TCGA-34-7107-01 2 240056339 240056339 T C HDAC4 Missense_Mutation p.T327A 0.63 tolerated(1) benign(0.001) TCGA-34-7107-01 2 241988141 241988141 T C SNED1 Missense_Mutation p.C488R 0.41 deleterious(0) probably_damaging(0.999) TCGA-34-7107-01 2 27360124 27360124 C G C2orf53 Missense_Mutation p.R358S 0.19 tolerated(0.26) benign(0.083) TCGA-34-7107-01 2 7035963 7035963 G A RSAD2 Missense_Mutation p.D326N 0.42 deleterious(0) possibly_damaging(0.691) TCGA-34-7107-01 2 89265914 89265914 G T IGKV1-6 Missense_Mutation p.A73E 0.37 deleterious(0.02) benign(0.157) TCGA-34-7107-01 2 99778866 99778866 C T LIPT1 Missense_Mutation p.T149I 0.36 deleterious(0) probably_damaging(0.995) TCGA-34-7107-01 3 105404311 105404311 C A CBLB Splice_Site p.X685_splice 0.19 TCGA-34-7107-01 3 109027037 109027037 T C DPPA2 Missense_Mutation p.E167G 0.17 tolerated(0.32) benign(0.303) TCGA-34-7107-01 3 112992127 112992127 C A BOC Nonsense_Mutation p.C391* 0.44 TCGA-34-7107-01 3 121350795 121350795 G A HCLS1 Silent p.D453D 0.11 TCGA-34-7107-01 3 126915984 126915984 C A C3orf56 Missense_Mutation p.H152Q 0.33 tolerated(0.24) benign(0.402) TCGA-34-7107-01 3 129373863 129373863 C A TMCC1 Missense_Mutation p.S532I 0.13 deleterious(0) probably_damaging(0.999) TCGA-34-7107-01 3 137729040 137729040 G A CLDN18 5'UTR 0.25 TCGA-34-7107-01 3 140251216 140251216 G - CLSTN2 Frame_Shift_Del p.V466* 0.30 TCGA-34-7107-01 3 141526659 141526659 T A GRK7 Missense_Mutation p.L408Q 0.26 tolerated(0.11) possibly_damaging(0.782) TCGA-34-7107-01 3 158402415 158402415 G A GFM1 Missense_Mutation p.E623K 0.17 deleterious(0) probably_damaging(0.938) TCGA-34-7107-01 3 158409297 158409297 G T GFM1 3'UTR 0.11 TCGA-34-7107-01 3 180359822 180359822 C T CCDC39 Silent p.A611A 0.08 TCGA-34-7107-01 3 183273479 183273479 A T KLHL6 5'Flank 0.20 TCGA-34-7107-01 3 183854505 183854505 C T EIF2B5 Nonsense_Mutation p.Q101* 0.04 TCGA-34-7107-01 3 190995912 190995912 A G UTS2B Silent p.L51L 0.63 TCGA-34-7107-01 3 194063162 194063162 C T CPN2 Silent p.P90P 0.04 TCGA-34-7107-01 3 195609100 195609100 C A TNK2 Missense_Mutation p.A300S 0.06 tolerated(0.07) possibly_damaging(0.857) TCGA-34-7107-01 3 196288202 196288202 G C WDR53 Missense_Mutation p.Q49E 0.07 tolerated(0.5) benign(0) TCGA-34-7107-01 3 21478596 21478597 - A ZNF385D Frame_Shift_Ins p.S180Mfs*9 0.37 TCGA-34-7107-01 4 110897254 110897254 C A EGF Missense_Mutation p.S639Y 0.61 deleterious(0) possibly_damaging(0.836) TCGA-34-7107-01 4 114274367 114274367 T C ANK2 Silent p.S1531S 0.52 TCGA-34-7107-01 4 123176386 123176386 T C KIAA1109 Missense_Mutation p.L2109P 0.61 probably_damaging(0.999) TCGA-34-7107-01 4 126328170 126328170 C T FAT4 Missense_Mutation p.R1815C 0.30 probably_damaging(1) TCGA-34-7107-01 4 187542174 187542176 GTG TT FAT1 Frame_Shift_Del p.P1855Qfs*11 0.41 TCGA-34-7107-01 4 190874271 190874271 C G FRG1 Missense_Mutation p.S103C 0.10 deleterious(0.03) probably_damaging(0.947) TCGA-34-7107-01 4 47560090 47560090 G A ATP10D Missense_Mutation p.R745Q 0.55 tolerated(0.29) benign(0.01) TCGA-34-7107-01 4 48140974 48140974 G C TEC Missense_Mutation p.P534R 0.30 deleterious(0) probably_damaging(1) TCGA-34-7107-01 4 55604711 55604711 C T KIT Silent p.H973H 0.25 TCGA-34-7107-01 4 89192303 89192303 C G PPM1K Intron 0.67 TCGA-34-7107-01 5 102890497 102890497 C A NUDT12 Missense_Mutation p.R341M 0.59 deleterious(0) probably_damaging(0.994) TCGA-34-7107-01 5 11159743 11159743 G T CTNND2 Silent p.R702R 0.42 TCGA-34-7107-01 5 150946761 150946762 - C FAT2 Frame_Shift_Ins p.P578Afs*16 0.38 TCGA-34-7107-01 5 159680599 159680599 C T CCNJL Missense_Mutation p.R365H 0.51 tolerated(0.26) benign(0.008) TCGA-34-7107-01 5 178552115 178552115 G - ADAMTS2 Frame_Shift_Del p.V940Cfs*50 0.35 TCGA-34-7107-01 5 23527052 23527052 C A PRDM9 Silent p.R619R 0.26 TCGA-34-7107-01 5 37201763 37201763 C G C5orf42 Missense_Mutation p.G1146A 0.29 tolerated(0.07) possibly_damaging(0.73) TCGA-34-7107-01 5 56180499 56180499 T C MAP3K1 Silent p.Y1276Y 0.68 TCGA-34-7107-01 5 71495291 71495291 A G MAP1B Missense_Mutation p.T2037A 0.64 benign(0.02) TCGA-34-7107-01 5 82833215 82833215 G C VCAN Missense_Mutation p.V1465L 0.60 tolerated(0.54) benign(0.001) TCGA-34-7107-01 5 9629646 9629646 G A TAS2R1 Nonsense_Mutation p.Q167* 0.19 TCGA-34-7107-01 6 117622147 117622147 T A ROS1 Missense_Mutation p.E2241D 0.10 deleterious(0.03) benign(0.069) TCGA-34-7107-01 6 128540205 128540205 T C PTPRK Missense_Mutation p.K244E 0.75 deleterious(0.01) benign(0.316) TCGA-34-7107-01 6 129498995 129498995 G T LAMA2 Missense_Mutation p.G484V 0.65 tolerated(0.22) possibly_damaging(0.898) TCGA-34-7107-01 6 13604728 13604728 C T SIRT5 Intron 0.15 TCGA-34-7107-01 6 144184359 144184359 G T LTV1 Missense_Mutation p.R418L 0.71 deleterious(0) probably_damaging(0.995) TCGA-34-7107-01 6 146720439 146720439 C A GRM1 Missense_Mutation p.A755D 0.70 deleterious(0) probably_damaging(0.978) TCGA-34-7107-01 6 148795266 148795266 G T SASH1 Missense_Mutation p.A179S 0.91 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-34-7107-01 6 159465056 159465056 G A TAGAP Missense_Mutation p.T12I 0.67 deleterious(0) benign(0.355) TCGA-34-7107-01 6 159653697 159653697 G T FNDC1 Missense_Mutation p.R718I 0.84 deleterious_low_confidence(0) unknown(0) TCGA-34-7107-01 6 161143461 161143461 T A PLG Missense_Mutation p.V373E 0.69 tolerated(0.12) benign(0.038) TCGA-34-7107-01 6 162206851 162206851 C G PARK2 Missense_Mutation p.R275P 0.72 deleterious(0) probably_damaging(0.998) TCGA-34-7107-01 6 29454621 29454621 G T MAS1L Missense_Mutation p.D353E 0.64 tolerated(0.79) benign(0.117) TCGA-34-7107-01 6 38758095 38758095 G T DNAH8 Missense_Mutation p.V682L 0.81 benign(0.001) TCGA-34-7107-01 6 38758134 38758134 C G DNAH8 Missense_Mutation p.Q695E 0.77 benign(0.002) TCGA-34-7107-01 6 51941110 51941110 T C PKHD1 Missense_Mutation p.I138V 0.65 tolerated(1) benign(0.002) TCGA-34-7107-01 6 656299 656299 C A HUS1B Missense_Mutation p.G216C 0.61 tolerated(0.06) benign(0.008) TCGA-34-7107-01 6 96054220 96054220 C G MANEA Missense_Mutation p.S443C 0.76 deleterious(0.01) possibly_damaging(0.902) TCGA-34-7107-01 7 100403311 100403311 G A EPHB4 Silent p.I830I 0.17 TCGA-34-7107-01 7 100682413 100682413 A T MUC17 Silent p.G2572G 0.23 TCGA-34-7107-01 7 102667904 102667904 C A FBXL13 Missense_Mutation p.D107Y 0.12 tolerated(0.16) benign(0.004) TCGA-34-7107-01 7 106938619 106938619 T C COG5 Silent p.Q458Q 0.48 TCGA-34-7107-01 7 107416969 107416969 C G SLC26A3 Silent p.V535V 0.20 TCGA-34-7107-01 7 120381625 120381625 G A KCND2 Missense_Mutation p.G439E 0.39 tolerated(0.08) benign(0.013) TCGA-34-7107-01 7 122261582 122261582 C T CADPS2 Missense_Mutation p.E353K 0.18 deleterious(0.01) possibly_damaging(0.694) TCGA-34-7107-01 7 142111839 142111839 G A TRBV5-7 Silent p.C7C 0.18 TCGA-34-7107-01 7 142119983 142119983 G T TRBV7-7 Missense_Mutation p.P62T 0.42 deleterious(0.03) possibly_damaging(0.597) TCGA-34-7107-01 7 142630688 142630688 G T TRPV5 5'UTR 0.21 TCGA-34-7107-01 7 143632547 143632547 C T OR2F2 Silent p.A74A 0.47 TCGA-34-7107-01 7 148777757 148777757 T G ZNF786 Missense_Mutation p.Q24P 0.53 tolerated(0.09) benign(0.079) TCGA-34-7107-01 7 151082230 151082230 C T WDR86 Missense_Mutation p.R269H 0.45 deleterious(0.04) benign(0.011) TCGA-34-7107-01 7 151860263 151860263 C A KMT2C Nonsense_Mutation p.G3467* 0.50 TCGA-34-7107-01 7 158719091 158719091 A G WDR60 Splice_Site p.X791_splice 0.53 TCGA-34-7107-01 7 17879549 17879549 G A SNX13 Nonsense_Mutation p.Q414* 0.20 TCGA-34-7107-01 7 19185028 19185028 G A FERD3L 5'UTR 0.20 TCGA-34-7107-01 7 37251046 37251046 C T ELMO1 Missense_Mutation p.S344N 0.46 deleterious(0.05) benign(0.007) TCGA-34-7107-01 7 49951752 49951752 T C VWC2 Missense_Mutation p.C317R 0.46 deleterious(0) probably_damaging(0.996) TCGA-34-7107-01 7 56021011 56021011 G - MRPS17 Frame_Shift_Del 0.22 TCGA-34-7107-01 7 64439339 64439339 G A ZNF117 Nonsense_Mutation p.Q204* 0.29 TCGA-34-7107-01 7 72040648 72040648 G A TYW1B Silent p.L240L 0.10 TCGA-34-7107-01 7 92098605 92098605 G T ERVW-1 Missense_Mutation p.S364Y 0.24 deleterious(0) probably_damaging(0.989) TCGA-34-7107-01 7 93065342 93065342 G T CALCR Silent p.V391V 0.24 TCGA-34-7107-01 7 97820130 97820130 T G LMTK2 Missense_Mutation p.I363M 0.24 deleterious(0) probably_damaging(0.983) TCGA-34-7107-01 8 110457238 110457238 A T PKHD1L1 Missense_Mutation p.T1714S 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-34-7107-01 8 110497354 110497354 G C PKHD1L1 Missense_Mutation p.D3220H 0.18 deleterious(0.01) possibly_damaging(0.905) TCGA-34-7107-01 8 113326251 113326251 G T CSMD3 Missense_Mutation p.S2527Y 0.27 tolerated(0.09) probably_damaging(0.961) TCGA-34-7107-01 8 113331119 113331119 G T CSMD3 Missense_Mutation p.T2436K 0.35 deleterious(0) possibly_damaging(0.9) TCGA-34-7107-01 8 113418828 113418828 C A CSMD3 Nonsense_Mutation p.G1912* 0.44 TCGA-34-7107-01 8 113421180 113421180 G A CSMD3 Missense_Mutation p.S1826F 0.16 tolerated(0.06) possibly_damaging(0.797) TCGA-34-7107-01 8 144804301 144804301 T A MAPK15 Silent p.S505S 0.50 TCGA-34-7107-01 8 145024547 145024547 C T PLEC Missense_Mutation p.A110T 0.46 unknown(0) TCGA-34-7107-01 8 2007311 2007311 C A MYOM2 Missense_Mutation p.P200T 0.31 deleterious(0) probably_damaging(1) TCGA-34-7107-01 8 2007329 2007329 G C MYOM2 Missense_Mutation p.E206Q 0.31 tolerated(0.09) possibly_damaging(0.555) TCGA-34-7107-01 8 23179729 23179729 T A LOXL2 Nonsense_Mutation p.K406* 0.35 TCGA-34-7107-01 8 25745430 25745430 C A EBF2 Missense_Mutation p.M270I 0.33 deleterious(0) possibly_damaging(0.785) TCGA-34-7107-01 8 29033655 29033655 T C KIF13B Missense_Mutation p.D292G 0.49 deleterious(0) probably_damaging(0.976) TCGA-34-7107-01 8 37792589 37792589 A G GOT1L1 Splice_Site p.X358_splice 0.37 TCGA-34-7107-01 8 3855477 3855477 C A CSMD1 Nonsense_Mutation p.E256* 0.31 TCGA-34-7107-01 8 53568682 53568682 C A RB1CC1 Missense_Mutation p.C1236F 0.19 tolerated_low_confidence(0.7) benign(0.001) TCGA-34-7107-01 8 55537993 55537993 T A RP1 Silent p.L517L 0.23 TCGA-34-7107-01 8 62212626 62212626 C T CLVS1 Silent p.L80L 0.63 TCGA-34-7107-01 8 6682732 6682732 G C XKR5 RNA 0.34 TCGA-34-7107-01 8 93023288 93023288 G A RUNX1T1 Missense_Mutation p.S178F 0.22 tolerated(0.28) possibly_damaging(0.757) TCGA-34-7107-01 8 97256229 97256229 T A MTERFD1 Missense_Mutation p.N326I 0.19 deleterious(0) possibly_damaging(0.697) TCGA-34-7107-01 9 104357027 104357027 G A PPP3R2 Silent p.I62I 0.09 TCGA-34-7107-01 9 109689276 109689276 T A ZNF462 Missense_Mutation p.V1028D 0.31 probably_damaging(0.997) TCGA-34-7107-01 9 128001607 128001607 C A HSPA5 Silent p.T203T 0.48 TCGA-34-7107-01 9 140395257 140395257 C A PNPLA7 Missense_Mutation p.R548L 0.47 tolerated(0.06) benign(0.246) TCGA-34-7107-01 9 140638532 140638532 G A EHMT1 Missense_Mutation p.R387H 0.08 tolerated_low_confidence(0.46) benign(0.001) TCGA-34-7107-01 9 37515917 37515917 G C FBXO10 Missense_Mutation p.L894V 0.75 deleterious(0.02) possibly_damaging(0.797) TCGA-34-7107-01 9 6602206 6602206 C A GLDC Splice_Site p.X353_splice 0.80 TCGA-34-7107-01 9 79118521 79118521 C G GCNT1 Silent p.L408L 0.04 TCGA-34-7107-01 9 84531288 84531288 A T SPATA31D5P RNA 0.41 TCGA-34-7107-01 9 90502762 90502762 C A SPATA31E1 Silent p.L1120L 0.53 TCGA-34-7107-01 9 90503255 90503255 G T SPATA31E1 Missense_Mutation p.D1285Y 0.32 deleterious(0) possibly_damaging(0.878) TCGA-34-7107-01 X 135429093 135429093 T C GPR112 Silent p.V1076V 0.89 TCGA-34-7107-01 X 153627899 153627899 A T RPL10 Missense_Mutation p.M52L 0.08 tolerated(1) benign(0.046) TCGA-34-7107-01 X 5827261 5827261 G A NLGN4X Silent p.D215D 0.21 TCGA-34-7107-01 X 83129597 83129597 C G CYLC1 Missense_Mutation p.C627W 0.77 deleterious(0) probably_damaging(0.989) TCGA-34-8454-01 10 101370898 101370898 C G SLC25A28 Missense_Mutation p.G268A 0.23 deleterious(0) probably_damaging(0.999) TCGA-34-8454-01 10 104262465 104262465 C A ACTR1A 5'UTR 0.56 TCGA-34-8454-01 10 11505737 11505737 G A USP6NL Missense_Mutation p.P414L 0.21 deleterious(0.04) benign(0.013) TCGA-34-8454-01 10 128850946 128850946 A G DOCK1 Missense_Mutation p.K714E 0.38 deleterious(0) benign(0.292) TCGA-34-8454-01 10 129864343 129864343 A G PTPRE Missense_Mutation p.K243R 0.54 deleterious(0.02) probably_damaging(0.997) TCGA-34-8454-01 10 16911671 16911671 C A CUBN Missense_Mutation p.A3140S 0.21 tolerated(0.27) benign(0.192) TCGA-34-8454-01 10 17840649 17840649 A T TMEM236 3'UTR 0.40 TCGA-34-8454-01 10 21823720 21823720 C G MLLT10 Silent p.V49V 0.13 TCGA-34-8454-01 10 46999833 46999833 C T GPRIN2 Missense_Mutation p.S318L 0.08 deleterious(0.01) possibly_damaging(0.865) TCGA-34-8454-01 10 53459351 53459351 C A CSTF2T 5'UTR 0.24 TCGA-34-8454-01 10 60580165 60580165 G T BICC1 Missense_Mutation p.D911Y 0.34 deleterious(0) probably_damaging(0.974) TCGA-34-8454-01 10 73765714 73765714 C T CHST3 Silent p.I38I 0.20 TCGA-34-8454-01 10 7786765 7786765 C T ITIH2 Missense_Mutation p.S807L 0.22 tolerated(0.11) possibly_damaging(0.864) TCGA-34-8454-01 10 85973032 85973032 G C CDHR1 Silent p.V656V 0.40 TCGA-34-8454-01 10 89720803 89720804 - A PTEN Frame_Shift_Ins p.T319Nfs*6 0.31 TCGA-34-8454-01 10 96447954 96447954 G T CYP2C18 Missense_Mutation p.G135V 0.48 deleterious(0) probably_damaging(0.998) TCGA-34-8454-01 10 97791803 97791803 C T CC2D2B 3'UTR 0.19 TCGA-34-8454-01 11 102076772 102076772 G T YAP1 Missense_Mutation p.R317S 0.15 deleterious(0) probably_damaging(0.986) TCGA-34-8454-01 11 106810884 106810884 G C GUCY1A2 Missense_Mutation p.Q170E 0.29 tolerated(0.31) benign(0.022) TCGA-34-8454-01 11 107833019 107833019 G A RAB39A Missense_Mutation p.G192E 0.16 deleterious(0) probably_damaging(1) TCGA-34-8454-01 11 107925386 107925386 C G CUL5 Missense_Mutation p.S189C 0.27 deleterious(0.01) possibly_damaging(0.673) TCGA-34-8454-01 11 1093834 1093834 A G MUC2 Missense_Mutation p.M1885V 0.24 unknown(0) TCGA-34-8454-01 11 118369096 118369096 C T KMT2A Silent p.F1938F 0.26 TCGA-34-8454-01 11 119216305 119216306 - GAA MFRP In_Frame_Ins p.F155dup 0.12 TCGA-34-8454-01 11 132290001 132290001 G T OPCML 3'UTR 0.13 TCGA-34-8454-01 11 134244051 134244051 C G GLB1L2 Missense_Mutation p.D536E 0.21 tolerated(0.59) benign(0.002) TCGA-34-8454-01 11 16036519 16036519 G C SOX6 Silent p.V567V 0.14 TCGA-34-8454-01 11 17741842 17741842 C A MYOD1 Silent p.P171P 0.16 TCGA-34-8454-01 11 18194667 18194667 C T MRGPRX4 5'UTR 0.27 TCGA-34-8454-01 11 18195112 18195112 C A MRGPRX4 Silent p.T103T 0.22 TCGA-34-8454-01 11 36248834 36248834 C A LDLRAD3 Silent p.S218S 0.17 TCGA-34-8454-01 11 40136561 40136561 C A LRRC4C Missense_Mutation p.V428L 0.18 deleterious(0.01) possibly_damaging(0.715) TCGA-34-8454-01 11 40137852 40137852 A T LRRC4C 5'UTR 0.21 TCGA-34-8454-01 11 46105846 46105846 C G PHF21A 5'UTR 0.29 TCGA-34-8454-01 11 4790654 4790654 A T OR51F1 Missense_Mutation p.L165H 0.27 deleterious(0) probably_damaging(0.98) TCGA-34-8454-01 11 48157733 48157733 G T PTPRJ Silent p.T586T 0.13 TCGA-34-8454-01 11 50003581 50003581 G A OR4C12 Missense_Mutation p.H153Y 0.19 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-34-8454-01 11 5009431 5009431 G C MMP26 5'UTR 0.29 TCGA-34-8454-01 11 55322056 55322056 G T OR4C15 Missense_Mutation p.G92W 0.14 tolerated_low_confidence(0.2) probably_damaging(1) TCGA-34-8454-01 11 55653011 55653011 G A TRIM51 Missense_Mutation p.R36Q 0.29 deleterious(0.04) probably_damaging(1) TCGA-34-8454-01 11 55681766 55681766 G T OR5W2 Missense_Mutation p.A98D 0.16 deleterious(0) possibly_damaging(0.893) TCGA-34-8454-01 11 55798744 55798744 A T OR5AS1 Missense_Mutation p.M284L 0.25 deleterious(0.02) probably_damaging(0.963) TCGA-34-8454-01 11 57252690 57252690 G C SLC43A1 Nonsense_Mutation p.S520* 0.23 TCGA-34-8454-01 11 59611530 59611530 T A GIF Splice_Site p.X27_splice 0.20 TCGA-34-8454-01 11 61089164 61089164 G A DDB1 Silent p.V376V 0.14 TCGA-34-8454-01 11 61502408 61502408 C G DAGLA Missense_Mutation p.I354M 0.25 deleterious(0.03) probably_damaging(0.993) TCGA-34-8454-01 11 65998324 65998324 G T PACS1 Silent p.L513L 0.18 TCGA-34-8454-01 11 66109047 66109047 C T BRMS1 Missense_Mutation p.E63K 0.14 deleterious(0.01) probably_damaging(0.99) TCGA-34-8454-01 11 66610726 66610726 C G C11orf80 3'UTR 0.27 TCGA-34-8454-01 11 73388771 73388771 T C RAB6A 3'UTR 0.22 TCGA-34-8454-01 11 76248961 76248961 G C C11orf30 Missense_Mutation p.E828Q 0.20 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-34-8454-01 11 78449585 78449585 C T TENM4 Missense_Mutation p.M929I 0.19 deleterious(0.04) benign(0) TCGA-34-8454-01 11 85687720 85687720 G A PICALM Silent p.P595P 0.25 TCGA-34-8454-01 11 89768571 89768571 C G TRIM49C Silent p.L64L 0.22 TCGA-34-8454-01 11 92534506 92534506 G T FAT3 Missense_Mutation p.S2776I 0.23 benign(0.001) TCGA-34-8454-01 12 100567203 100567203 C A RP11-175P13.3 RNA 0.44 TCGA-34-8454-01 12 101413851 101413851 C A ANO4 Silent p.A223A 0.13 TCGA-34-8454-01 12 102558247 102558247 C T PARPBP Missense_Mutation p.S176L 0.19 deleterious(0) possibly_damaging(0.814) TCGA-34-8454-01 12 103352446 103352446 C T ASCL1 Missense_Mutation p.R142W 0.33 deleterious(0) probably_damaging(1) TCGA-34-8454-01 12 112572675 112572675 C A TRAFD1 Missense_Mutation p.Q61K 0.26 deleterious(0.04) probably_damaging(0.996) TCGA-34-8454-01 12 11461694 11461694 G C PRB4 Missense_Mutation p.P75A 0.12 deleterious_low_confidence(0.03) unknown(0) TCGA-34-8454-01 12 116445438 116445438 G C MED13L Silent p.L672L 0.21 TCGA-34-8454-01 12 122284816 122284816 G A HPD Silent p.G261G 0.15 TCGA-34-8454-01 12 123067352 123067352 C G KNTC1 Missense_Mutation p.A1028G 0.27 tolerated(0.37) benign(0.02) TCGA-34-8454-01 12 123262037 123262037 G A CCDC62 Splice_Site p.X13_splice 0.31 TCGA-34-8454-01 12 125509627 125509627 A T BRI3BP Missense_Mutation p.Y136F 0.26 deleterious(0) probably_damaging(0.991) TCGA-34-8454-01 12 20864374 20864374 G T SLCO1C1 Silent p.P153P 0.12 TCGA-34-8454-01 12 27813816 27813816 G C PPFIBP1 Splice_Site p.X302_splice 0.20 TCGA-34-8454-01 12 2907911 2907911 G C FKBP4 Missense_Mutation p.E145Q 0.03 tolerated(0.05) benign(0.13) TCGA-34-8454-01 12 29659904 29659904 C A TMTC1 Missense_Mutation p.A842S 0.15 deleterious(0) possibly_damaging(0.751) TCGA-34-8454-01 12 42491755 42491755 C A GXYLT1 Missense_Mutation p.W315C 0.17 deleterious(0) probably_damaging(1) TCGA-34-8454-01 12 4737704 4737704 C G AKAP3 Missense_Mutation p.D122H 0.18 deleterious(0) probably_damaging(0.999) TCGA-34-8454-01 12 4737716 4737716 C G AKAP3 Missense_Mutation p.G118R 0.19 tolerated(0.48) benign(0.003) TCGA-34-8454-01 12 48372182 48372182 C A COL2A1 Splice_Site p.X966_splice 0.22 TCGA-34-8454-01 12 48391841 48391841 C T COL2A1 Missense_Mutation p.G117R 0.10 unknown(0) TCGA-34-8454-01 12 4855388 4855388 C T GALNT8 Silent p.L379L 0.22 TCGA-34-8454-01 12 49435021 49435022 - A KMT2D Frame_Shift_Ins p.G2178Wfs*24 0.33 TCGA-34-8454-01 12 49487996 49487996 G A DHH Silent p.T100T 0.23 TCGA-34-8454-01 12 51632595 51632595 G T DAZAP2 5'Flank 0.22 TCGA-34-8454-01 12 52082858 52082858 G C SCN8A Intron 0.29 TCGA-34-8454-01 12 55524512 55524512 C G OR9K2 Silent p.V320V 0.21 TCGA-34-8454-01 12 56561865 56561865 G A SMARCC2 Silent p.I912I 0.16 TCGA-34-8454-01 12 56561949 56561949 G A SMARCC2 Silent p.I884I 0.16 TCGA-34-8454-01 12 56845096 56845096 C A MIP Nonsense_Mutation p.E254* 0.20 TCGA-34-8454-01 12 57135563 57135563 C G PRIM1 Missense_Mutation p.W269C 0.15 deleterious(0) probably_damaging(1) TCGA-34-8454-01 12 57423329 57423329 G C MYO1A Missense_Mutation p.L923V 0.19 tolerated(0.14) benign(0.079) TCGA-34-8454-01 12 6438712 6438712 T C TNFRSF1A Silent p.L378L 0.16 TCGA-34-8454-01 12 64437230 64437230 C A SRGAP1 Missense_Mutation p.Q226K 0.26 tolerated(0.12) benign(0.11) TCGA-34-8454-01 12 70760841 70760841 C A KCNMB4 Silent p.T109T 0.19 TCGA-34-8454-01 12 8689765 8689765 C G CLEC4E Missense_Mutation p.K106N 0.04 deleterious(0.05) benign(0.052) TCGA-34-8454-01 12 9086533 9086533 G T PHC1 Missense_Mutation p.G656C 0.23 tolerated(0.07) unknown(0) TCGA-34-8454-01 12 9086534 9086534 G T PHC1 Missense_Mutation p.G656V 0.23 tolerated(0.29) unknown(0) TCGA-34-8454-01 12 99020385 99020385 G C IKBIP Missense_Mutation p.Q153E 0.28 tolerated(0.16) benign(0.133) TCGA-34-8454-01 13 100207875 100207875 C G TM9SF2 Missense_Mutation p.L576V 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-34-8454-01 13 114107642 114107642 C A ADPRHL1 Silent p.L37L 0.36 TCGA-34-8454-01 13 21217704 21217704 G T IFT88 Missense_Mutation p.R607L 0.27 tolerated(0.18) benign(0.008) TCGA-34-8454-01 13 38320397 38320397 G A TRPC4 Missense_Mutation p.H192Y 0.17 deleterious(0.01) benign(0.234) TCGA-34-8454-01 13 39262166 39262166 C A FREM2 Missense_Mutation p.R229S 0.28 deleterious(0.01) possibly_damaging(0.753) TCGA-34-8454-01 13 42871231 42871231 C A AKAP11 Silent p.L88L 0.20 TCGA-34-8454-01 14 102463555 102463555 G T DYNC1H1 Missense_Mutation p.V1250L 0.34 benign(0.405) TCGA-34-8454-01 14 105177281 105177281 C T INF2 Silent p.L749L 0.26 TCGA-34-8454-01 14 105178767 105178767 C G INF2 Intron 0.10 TCGA-34-8454-01 14 106311904 106311904 C A IGHD Silent p.T36T 0.50 TCGA-34-8454-01 14 106478526 106478526 C A IGHV4-4 Missense_Mutation p.W5L 0.39 tolerated_low_confidence(0.09) possibly_damaging(0.536) TCGA-34-8454-01 14 20344433 20344433 G T OR4K2 Missense_Mutation p.V3L 0.33 tolerated(0.36) benign(0.001) TCGA-34-8454-01 14 20978790 20978790 G C RNASE10 Missense_Mutation p.E54Q 0.27 deleterious(0.03) benign(0.094) TCGA-34-8454-01 14 21793201 21793201 G T RPGRIP1 Missense_Mutation p.E729D 0.26 tolerated(0.11) probably_damaging(0.978) TCGA-34-8454-01 14 22315315 22315315 G A TRAV8-2 Missense_Mutation p.E85K 0.22 tolerated(0.09) benign(0.039) TCGA-34-8454-01 14 34419793 34419793 G C EGLN3 Missense_Mutation p.L56V 0.09 deleterious(0) benign(0.206) TCGA-34-8454-01 14 38310761 38310761 G T TTC6 Missense_Mutation p.D1804Y 0.14 deleterious(0) probably_damaging(1) TCGA-34-8454-01 14 58934551 58934551 C T KIAA0586 Nonsense_Mutation p.R838* 0.20 TCGA-34-8454-01 14 73137827 73137827 G C DPF3 3'UTR 0.32 TCGA-34-8454-01 14 91642341 91642341 G T C14orf159 Missense_Mutation p.G224V 0.34 deleterious(0) probably_damaging(0.947) TCGA-34-8454-01 15 22473058 22473058 G C IGHV4OR15-8 Missense_Mutation p.I71M 0.06 tolerated(0.08) possibly_damaging(0.579) TCGA-34-8454-01 15 23812018 23812018 G T MKRN3 Missense_Mutation p.Q363H 0.30 tolerated(0.06) probably_damaging(0.998) TCGA-34-8454-01 15 25492365 25492365 C A SNORD115-40 3'Flank 0.28 TCGA-34-8454-01 15 31229447 31229447 A C FAN1 Missense_Mutation p.Q1014H 0.28 deleterious(0.04) benign(0.001) TCGA-34-8454-01 15 31283692 31283692 C A MTMR10 Silent p.P6P 0.37 TCGA-34-8454-01 15 34080646 34080646 G C RYR3 Missense_Mutation p.V3273L 0.38 probably_damaging(0.998) TCGA-34-8454-01 15 43398211 43398211 C T UBR1 Missense_Mutation p.E4K 0.52 tolerated_low_confidence(0.55) benign(0.016) TCGA-34-8454-01 15 65444805 65444805 C G CLPX Missense_Mutation p.E592Q 0.11 tolerated(0.09) benign(0.029) TCGA-34-8454-01 15 66170220 66170220 C G RAB11A Missense_Mutation p.I119M 0.24 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-34-8454-01 15 66845411 66845411 C G LCTL Missense_Mutation p.E370Q 0.25 tolerated(0.18) possibly_damaging(0.483) TCGA-34-8454-01 15 69739232 69739232 G C KIF23 Missense_Mutation p.R940T 0.18 deleterious(0.01) benign(0.161) TCGA-34-8454-01 15 74425170 74425170 C T ISLR2 Silent p.A25A 0.13 TCGA-34-8454-01 15 74963989 74963989 C G EDC3 Missense_Mutation p.Q97H 0.28 tolerated(0.07) benign(0.02) TCGA-34-8454-01 15 75498581 75498581 G C C15orf39 Silent p.A64A 0.35 TCGA-34-8454-01 15 79750208 79750208 C A KIAA1024 Missense_Mutation p.N573K 0.21 tolerated(0.77) benign(0.016) TCGA-34-8454-01 15 81271504 81271504 G A MESDC2 3'UTR 0.24 TCGA-34-8454-01 15 84651192 84651192 C T ADAMTSL3 Nonsense_Mutation p.R938* 0.28 TCGA-34-8454-01 15 89074015 89074015 C A DET1 Nonsense_Mutation p.E319* 0.31 TCGA-34-8454-01 15 90320191 90320191 G T MESP2 Silent p.G201G 0.30 TCGA-34-8454-01 15 91040461 91040461 C G IQGAP1 Intron 0.11 TCGA-34-8454-01 15 91040533 91040533 C A IQGAP1 Missense_Mutation p.F1607L 0.15 deleterious(0.04) benign(0.268) TCGA-34-8454-01 16 1033853 1033853 A G SOX8 Missense_Mutation p.H183R 0.18 deleterious(0.03) benign(0.001) TCGA-34-8454-01 16 1511652 1511652 G T CLCN7 Missense_Mutation p.F79L 0.16 tolerated(0.63) benign(0) TCGA-34-8454-01 16 1962005 1962005 G A HS3ST6 Silent p.R174R 0.27 TCGA-34-8454-01 16 2029845 2029845 C T NOXO1 Missense_Mutation p.E221K 0.31 tolerated(0.07) benign(0.343) TCGA-34-8454-01 16 20826259 20826259 C T AC004381.6 Missense_Mutation p.L88F 0.27 deleterious(0) probably_damaging(0.918) TCGA-34-8454-01 16 21031016 21031016 C T DNAH3 Missense_Mutation p.M1984I 0.21 tolerated(0.49) benign(0.001) TCGA-34-8454-01 16 21031019 21031019 G T DNAH3 Silent p.I1983I 0.23 TCGA-34-8454-01 16 22320336 22320336 G C POLR3E Missense_Mutation p.A86P 0.24 tolerated(0.3) benign(0.047) TCGA-34-8454-01 16 2282245 2282245 G T E4F1 Silent p.P163P 0.27 TCGA-34-8454-01 16 23223996 23223996 C T SCNN1G Intron 0.30 TCGA-34-8454-01 16 2522281 2522281 C T NTN3 Silent p.F193F 0.17 TCGA-34-8454-01 16 2813407 2813407 G A SRRM2 Missense_Mutation p.E960K 0.17 unknown(0) TCGA-34-8454-01 16 2813934 2813934 G A SRRM2 Silent p.Q1135Q 0.20 TCGA-34-8454-01 16 29922419 29922419 G C KCTD13 Silent p.L211L 0.26 TCGA-34-8454-01 16 30666086 30666086 C T PRR14 Silent p.L265L 0.15 TCGA-34-8454-01 16 30667462 30667462 C T PRR14 Nonsense_Mutation p.R530* 0.20 TCGA-34-8454-01 16 30991408 30991408 G T SETD1A Missense_Mutation p.G1434V 0.23 unknown(0) TCGA-34-8454-01 16 30998277 30998277 C T HSD3B7 Silent p.L216L 0.21 TCGA-34-8454-01 16 320618 320618 G T RGS11 Missense_Mutation p.D370E 0.23 deleterious(0.01) possibly_damaging(0.631) TCGA-34-8454-01 16 4861200 4861200 G A GLYR1 Missense_Mutation p.P520S 0.21 tolerated(0.08) benign(0.159) TCGA-34-8454-01 16 50707461 50707461 C G SNX20 Silent p.L269L 0.14 TCGA-34-8454-01 16 50828335 50828335 G T CYLD Silent p.R894R 0.21 TCGA-34-8454-01 16 58076194 58076194 C T MMP15 Silent p.I408I 0.25 TCGA-34-8454-01 16 596943 596943 C G CAPN15 Silent p.L35L 0.14 TCGA-34-8454-01 16 67319046 67319046 G A PLEKHG4 Missense_Mutation p.G708E 0.17 tolerated(0.23) benign(0.003) TCGA-34-8454-01 16 67688803 67688803 A G RLTPR Silent p.Q1235Q 0.19 TCGA-34-8454-01 16 67709520 67709521 - C GFOD2 Frame_Shift_Ins p.V233Cfs*3 0.13 TCGA-34-8454-01 16 67942882 67942882 C T PSKH1 Missense_Mutation p.P77L 0.12 tolerated(0.25) benign(0.01) TCGA-34-8454-01 16 69776230 69776230 G A NOB1 3'UTR 0.15 TCGA-34-8454-01 16 70594475 70594475 G T SF3B3 Missense_Mutation p.R705L 0.19 tolerated(0.31) benign(0.001) TCGA-34-8454-01 16 71951015 71951015 C G IST1 Nonsense_Mutation p.S125* 0.29 TCGA-34-8454-01 16 80667029 80667029 G A CDYL2 Missense_Mutation p.R241C 0.24 deleterious(0) probably_damaging(0.998) TCGA-34-8454-01 16 85015543 85015543 G C ZDHHC7 Missense_Mutation p.P162A 0.15 deleterious(0.05) probably_damaging(0.999) TCGA-34-8454-01 16 85697062 85697063 CC T GSE1 Frame_Shift_Del p.P829Lfs*26 0.21 TCGA-34-8454-01 16 89703068 89703068 C T DPEP1 Silent p.L166L 0.18 TCGA-34-8454-01 16 90161600 90161600 G C TUBB8P7 RNA 0.20 TCGA-34-8454-01 16 9857616 9857616 G C GRIN2A Missense_Mutation p.T1262S 0.18 tolerated(0.9) benign(0.002) TCGA-34-8454-01 17 10398547 10398547 G C MYH1 Missense_Mutation p.R1753G 0.25 deleterious(0.01) benign(0.319) TCGA-34-8454-01 17 11642212 11642212 G A DNAH9 Missense_Mutation p.D1944N 0.26 possibly_damaging(0.71) TCGA-34-8454-01 17 15406280 15406280 G C TVP23C Silent p.L243L 0.17 TCGA-34-8454-01 17 16203239 16203239 G C PIGL Missense_Mutation p.E125Q 0.29 tolerated(0.56) benign(0.038) TCGA-34-8454-01 17 16246170 16246170 C G CENPV Missense_Mutation p.M260I 0.21 tolerated(0.18) benign(0.007) TCGA-34-8454-01 17 26684314 26684314 C A POLDIP2 Missense_Mutation p.R53L 0.20 deleterious(0.02) benign(0.372) TCGA-34-8454-01 17 27186235 27186235 G T ERAL1 Missense_Mutation p.W375C 0.26 deleterious(0) possibly_damaging(0.566) TCGA-34-8454-01 17 27994177 27994177 T G SSH2 Missense_Mutation p.K265Q 0.21 tolerated(0.1) probably_damaging(0.956) TCGA-34-8454-01 17 29528441 29528441 C T NF1 Nonsense_Mutation p.Q400* 0.23 TCGA-34-8454-01 17 33479909 33479909 C G UNC45B Intron 0.23 TCGA-34-8454-01 17 37564951 37564951 G C MED1 Missense_Mutation p.Q1175E 0.17 tolerated_low_confidence(0.07) unknown(0) TCGA-34-8454-01 17 37565046 37565046 G C MED1 Missense_Mutation p.S1143C 0.24 deleterious_low_confidence(0) unknown(0) TCGA-34-8454-01 17 38133417 38133417 G A GSDMA 3'UTR 0.21 TCGA-34-8454-01 17 39871895 39871895 G - GAST Frame_Shift_Del p.A70Qfs*? 0.23 TCGA-34-8454-01 17 40850701 40850701 C T CNTNAP1 Missense_Mutation p.R1310C 0.20 deleterious(0) probably_damaging(0.981) TCGA-34-8454-01 17 40850755 40850755 C G CNTNAP1 Missense_Mutation p.P1328A 0.19 tolerated_low_confidence(0.41) benign(0) TCGA-34-8454-01 17 40850942 40850942 C G CNTNAP1 3'UTR 0.16 TCGA-34-8454-01 17 47916024 47916024 C T TAC4 Missense_Mutation p.E108K 0.24 tolerated_low_confidence(0.1) probably_damaging(0.987) TCGA-34-8454-01 17 48447318 48447318 G A MRPL27 Intron 0.23 TCGA-34-8454-01 17 48741370 48741370 C G ABCC3 Silent p.L412L 0.22 TCGA-34-8454-01 17 49077078 49077078 C A SPAG9 Silent p.R536R 0.17 TCGA-34-8454-01 17 5462546 5462546 G C NLRP1 Missense_Mutation p.F490L 0.25 deleterious(0.04) possibly_damaging(0.773) TCGA-34-8454-01 17 54671750 54671750 C T NOG Missense_Mutation p.P56S 0.23 deleterious(0) probably_damaging(0.999) TCGA-34-8454-01 17 62024435 62024435 C G SCN4A Silent p.L1137L 0.36 TCGA-34-8454-01 17 6374628 6374628 G T PITPNM3 Silent p.R493R 0.57 TCGA-34-8454-01 17 67264112 67264115 AAGT - ABCA5 Frame_Shift_Del p.Y1038Lfs*45 0.20 TCGA-34-8454-01 17 685717 685717 G A RNMTL1 Silent p.L33L 0.38 TCGA-34-8454-01 17 686531 686531 G C RNMTL1 Missense_Mutation p.D175H 0.25 tolerated(0.17) possibly_damaging(0.852) TCGA-34-8454-01 17 72608882 72608882 G C CD300E Silent p.L176L 0.17 TCGA-34-8454-01 17 7417153 7417153 C G POLR2A Missense_Mutation p.S1857C 0.36 possibly_damaging(0.472) TCGA-34-8454-01 17 7530891 7530891 A C SAT2 Missense_Mutation p.I21M 0.23 deleterious(0.03) possibly_damaging(0.84) TCGA-34-8454-01 17 7578395 7578395 G A TP53 Missense_Mutation p.H179Y 0.28 deleterious(0) probably_damaging(1) TCGA-34-8454-01 17 79620280 79620280 C T PDE6G Missense_Mutation p.G19E 0.24 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-34-8454-01 17 79873346 79873346 C T SIRT7 Missense_Mutation p.M150I 0.29 deleterious(0) possibly_damaging(0.904) TCGA-34-8454-01 17 79891148 79891148 G A PYCR1 Missense_Mutation p.S301L 0.27 tolerated_low_confidence(0.19) benign(0.001) TCGA-34-8454-01 17 80050445 80050445 C G FASN Silent p.L305L 0.17 TCGA-34-8454-01 17 80320444 80320444 G A TEX19 Missense_Mutation p.D140N 0.25 tolerated(0.08) probably_damaging(0.998) TCGA-34-8454-01 17 80320555 80320555 G C TEX19 3'UTR 0.14 TCGA-34-8454-01 17 80320594 80320594 G A TEX19 3'UTR 0.23 TCGA-34-8454-01 18 10696185 10696185 C A PIEZO2 Silent p.V2246V 0.24 TCGA-34-8454-01 18 12325409 12325409 C G TUBB6 Silent p.L207L 0.20 TCGA-34-8454-01 18 13057585 13057585 G T CEP192 Silent p.G1370G 0.13 TCGA-34-8454-01 18 13826590 13826590 C G MC5R Missense_Mutation p.H276D 0.34 deleterious(0.04) benign(0.171) TCGA-34-8454-01 18 39584351 39584351 G T PIK3C3 Missense_Mutation p.W339L 0.18 deleterious(0) probably_damaging(1) TCGA-34-8454-01 18 56052782 56052782 G A NEDD4L Silent p.V817V 0.12 TCGA-34-8454-01 18 56402522 56402522 G C MALT1 Missense_Mutation p.D522H 0.28 deleterious(0) probably_damaging(0.944) TCGA-34-8454-01 18 56587152 56587152 A T ZNF532 Missense_Mutation p.T545S 0.28 tolerated(0.74) benign(0.024) TCGA-34-8454-01 18 67727234 67727234 G C RTTN Missense_Mutation p.L1598V 0.14 tolerated(0.44) benign(0.079) TCGA-34-8454-01 18 67992046 67992046 G T SOCS6 Missense_Mutation p.G48C 0.16 deleterious_low_confidence(0) possibly_damaging(0.479) TCGA-34-8454-01 19 10445024 10445024 C G ICAM3 Missense_Mutation p.R418T 0.24 tolerated(0.52) benign(0.001) TCGA-34-8454-01 19 12188351 12188351 G C ZNF844 3'UTR 0.26 TCGA-34-8454-01 19 12786485 12786485 G A WDR83 Silent p.%3D 0.24 TCGA-34-8454-01 19 14199230 14199230 C T SAMD1 Silent p.%3D 0.23 TCGA-34-8454-01 19 1481871 1481871 G - PCSK4 Frame_Shift_Del p.L719Sfs*146 0.10 TCGA-34-8454-01 19 16238297 16238297 G A RAB8A Silent p.V125V 0.26 TCGA-34-8454-01 19 16275661 16275661 C A CIB3 Missense_Mutation p.R137L 0.19 tolerated(0.12) probably_damaging(0.984) TCGA-34-8454-01 19 17025309 17025309 C A CPAMD8 Splice_Site p.X1310_splice 0.17 TCGA-34-8454-01 19 17438569 17438569 C G ANO8 Missense_Mutation p.D783H 0.20 deleterious(0) unknown(0) TCGA-34-8454-01 19 19206998 19206998 C T SLC25A42 Missense_Mutation p.S22L 0.13 tolerated(0.64) benign(0.001) TCGA-34-8454-01 19 19338264 19338264 C T NCAN Missense_Mutation p.S612L 0.17 tolerated(0.32) benign(0.001) TCGA-34-8454-01 19 20003140 20003140 C T ZNF253 Missense_Mutation p.H362Y 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-34-8454-01 19 21265149 21265149 G C ZNF714 5'UTR 0.17 TCGA-34-8454-01 19 22941270 22941270 A T ZNF99 Missense_Mutation p.Y481N 0.16 deleterious(0) probably_damaging(0.999) TCGA-34-8454-01 19 2918048 2918048 G C ZNF57 Missense_Mutation p.E477Q 0.26 deleterious(0.03) probably_damaging(0.921) TCGA-34-8454-01 19 35749909 35749909 G T LSR Silent p.V220V 0.28 TCGA-34-8454-01 19 35842931 35842931 C A FFAR1 Silent p.G159G 0.16 TCGA-34-8454-01 19 36041824 36041824 G A ATP4A Silent p.F997F 0.16 TCGA-34-8454-01 19 36053364 36053364 A T ATP4A Missense_Mutation p.S131R 0.23 tolerated(0.22) benign(0.051) TCGA-34-8454-01 19 3633478 3633478 T C PIP5K1C Missense_Mutation p.Y654C 0.24 tolerated_low_confidence(0.15) benign(0.376) TCGA-34-8454-01 19 36348265 36348265 T C KIRREL2 Missense_Mutation p.L27P 0.18 tolerated(0.09) benign(0.102) TCGA-34-8454-01 19 37853740 37853740 A T HKR1 Missense_Mutation p.Q348L 0.22 tolerated(0.1) benign(0.026) TCGA-34-8454-01 19 38056576 38056576 C T ZNF571 Missense_Mutation p.E252K 0.23 tolerated(0.16) benign(0.002) TCGA-34-8454-01 19 39760157 39760157 T A IFNL2 Silent p.A100A 0.18 TCGA-34-8454-01 19 41025378 41025378 C A SPTBN4 Missense_Mutation p.H992N 0.24 deleterious(0) possibly_damaging(0.544) TCGA-34-8454-01 19 4333775 4333775 G A STAP2 Silent p.L71L 0.22 TCGA-34-8454-01 19 43375950 43375950 G A PSG1 Silent p.S226S 0.19 TCGA-34-8454-01 19 44254845 44254845 G A SMG9 Missense_Mutation p.R17W 0.05 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-34-8454-01 19 44351293 44351293 C G ZNF283 Missense_Mutation p.I180M 0.15 tolerated(0.09) probably_damaging(0.991) TCGA-34-8454-01 19 45781298 45781298 G T MARK4 Nonsense_Mutation p.E302* 0.21 TCGA-34-8454-01 19 46130049 46130049 T A EML2 Missense_Mutation p.T420S 0.18 tolerated(0.33) benign(0.005) TCGA-34-8454-01 19 47423001 47423001 G T ARHGAP35 Nonsense_Mutation p.E357* 0.34 TCGA-34-8454-01 19 47823715 47823715 C A C5AR1 Silent p.L227L 0.23 TCGA-34-8454-01 19 48631179 48631179 G A LIG1 Silent p.T640T 0.20 TCGA-34-8454-01 19 50902710 50902710 C T POLD1 Silent p.I95I 0.16 TCGA-34-8454-01 19 50979648 50979648 T A FAM71E1 5'UTR 0.24 TCGA-34-8454-01 19 53304605 53304605 C T ZNF28 Missense_Mutation p.E165K 0.13 tolerated(0.07) benign(0.084) TCGA-34-8454-01 19 53994439 53994439 G T ZNF813 Missense_Mutation p.R318M 0.12 deleterious(0) benign(0.309) TCGA-34-8454-01 19 54780758 54780758 C A LILRB2 Silent p.V462V 0.49 TCGA-34-8454-01 19 56416318 56416318 C G NLRP13 Missense_Mutation p.E870Q 0.23 tolerated(0.96) benign(0.064) TCGA-34-8454-01 19 56703329 56703329 C G ZSCAN5B Missense_Mutation p.D160H 0.15 tolerated(0.1) benign(0.006) TCGA-34-8454-01 19 57176494 57176494 C T ZNF835 Missense_Mutation p.E25K 0.10 tolerated(0.27) benign(0) TCGA-34-8454-01 19 57932593 57932593 G T ZNF17 Missense_Mutation p.R578M 0.36 deleterious(0) benign(0.055) TCGA-34-8454-01 19 57953329 57953329 A G ZNF749 Missense_Mutation p.H31R 0.47 tolerated(0.4) possibly_damaging(0.803) TCGA-34-8454-01 19 58050145 58050145 G C ZNF549 Missense_Mutation p.E591D 0.14 deleterious(0) benign(0.067) TCGA-34-8454-01 19 58187641 58187641 C G ZSCAN4 Nonsense_Mutation p.S43* 0.10 TCGA-34-8454-01 19 58199373 58199373 A T ZNF551 Missense_Mutation p.H577L 0.12 deleterious(0) probably_damaging(0.998) TCGA-34-8454-01 19 58320178 58320178 C G ZNF552 Missense_Mutation p.E152Q 0.12 tolerated(0.07) benign(0.309) TCGA-34-8454-01 19 5866562 5866562 G A FUT5 3'UTR 0.09 TCGA-34-8454-01 19 58965772 58965772 G C ZNF324B Intron 0.08 TCGA-34-8454-01 19 6416832 6416832 C G KHSRP Missense_Mutation p.R415T 0.20 deleterious(0.03) possibly_damaging(0.793) TCGA-34-8454-01 19 6495472 6495472 G T TUBB4A Silent p.P346P 0.27 TCGA-34-8454-01 19 7122912 7122912 C A INSR Missense_Mutation p.R1116L 0.26 deleterious(0) probably_damaging(0.983) TCGA-34-8454-01 19 9064866 9064866 G C MUC16 Missense_Mutation p.S7527C 0.15 unknown(0) TCGA-34-8454-01 19 9091671 9091671 G C MUC16 Missense_Mutation p.I48M 0.21 unknown(0) TCGA-34-8454-01 19 9204294 9204294 C A OR1M1 Missense_Mutation p.A125D 0.19 deleterious(0) probably_damaging(0.999) TCGA-34-8454-01 19 9204355 9204355 C T OR1M1 Silent p.V145V 0.15 TCGA-34-8454-01 19 9453624 9453624 G C ZNF559 Silent p.G499G 0.28 TCGA-34-8454-01 19 994342 994342 G C WDR18 Nonstop_Mutation p.*433Sext*12 0.15 TCGA-34-8454-01 1 100203696 100203696 C G FRRS1 Missense_Mutation p.M235I 0.24 deleterious(0.04) possibly_damaging(0.557) TCGA-34-8454-01 1 110255437 110255437 C T GSTM5 Intron 0.38 TCGA-34-8454-01 1 115420714 115420714 G T SYCP1 Splice_Site p.X268_splice 0.26 TCGA-34-8454-01 1 118065523 118065523 C G MAN1A2 Missense_Mutation p.L624V 0.15 deleterious(0.02) possibly_damaging(0.859) TCGA-34-8454-01 1 118509300 118509300 G A SPAG17 Missense_Mutation p.S2155L 0.15 tolerated(1) benign(0.002) TCGA-34-8454-01 1 120269489 120269489 G A PHGDH Silent p.A124A 0.19 TCGA-34-8454-01 1 12383786 12383786 G C VPS13D Missense_Mutation p.E2647Q 0.26 benign(0.064) TCGA-34-8454-01 1 1275442 1275442 G C DVL1 Missense_Mutation p.I295M 0.08 deleterious(0) probably_damaging(0.91) TCGA-34-8454-01 1 12908068 12908068 A G HNRNPCL1 Silent p.T25T 0.07 TCGA-34-8454-01 1 14108068 14108068 G C PRDM2 Missense_Mutation p.E1260Q 0.25 unknown(0) TCGA-34-8454-01 1 145293565 145293565 C A NBPF10 Silent p.R54R 0.05 TCGA-34-8454-01 1 145816723 145816723 T C GPR89A Silent p.V40V 0.13 TCGA-34-8454-01 1 150193025 150193025 C A ANP32E Missense_Mutation p.A259S 0.17 tolerated(0.61) unknown(0) TCGA-34-8454-01 1 150239850 150239850 A T APH1A Missense_Mutation p.S129R 0.20 deleterious(0) benign(0.294) TCGA-34-8454-01 1 150325440 150325440 A G PRPF3 Silent p.L679L 0.23 TCGA-34-8454-01 1 150444068 150444068 G A RPRD2 Missense_Mutation p.E882K 0.24 deleterious_low_confidence(0.01) benign(0.282) TCGA-34-8454-01 1 152283039 152283039 G T FLG Missense_Mutation p.F1441L 0.20 benign(0.153) TCGA-34-8454-01 1 152648513 152648513 C A LCE2C Missense_Mutation p.Q8K 0.16 tolerated_low_confidence(0.28) unknown(0) TCGA-34-8454-01 1 152770623 152770623 C G LCE1D 3'UTR 0.12 TCGA-34-8454-01 1 153534019 153534019 C T S100A2 Missense_Mutation p.E64K 0.04 tolerated(0.88) benign(0.002) TCGA-34-8454-01 1 153933057 153933057 C A SLC39A1 Silent p.G164G 0.19 TCGA-34-8454-01 1 155058912 155058912 C T EFNA3 Nonsense_Mutation p.Q204* 0.25 TCGA-34-8454-01 1 155058938 155058938 C A EFNA3 Silent p.I212I 0.25 TCGA-34-8454-01 1 155187052 155187052 T A MTX1 3'Flank 0.30 TCGA-34-8454-01 1 155279943 155279943 G C FDPS Missense_Mutation p.E96Q 0.19 tolerated(0.12) benign(0.03) TCGA-34-8454-01 1 157739887 157739887 C A FCRL2 Missense_Mutation p.G122C 0.14 deleterious(0.01) probably_damaging(0.939) TCGA-34-8454-01 1 158390183 158390183 G A OR10K2 Silent p.I158I 0.27 TCGA-34-8454-01 1 160340615 160340615 C A NHLH1 Missense_Mutation p.P32T 0.23 tolerated(0.09) possibly_damaging(0.641) TCGA-34-8454-01 1 16257779 16257779 G C SPEN Missense_Mutation p.E1682Q 0.23 possibly_damaging(0.464) TCGA-34-8454-01 1 16258109 16258109 G A SPEN Missense_Mutation p.E1792K 0.22 benign(0.004) TCGA-34-8454-01 1 16259108 16259108 G A SPEN Missense_Mutation p.E2125K 0.22 benign(0.004) TCGA-34-8454-01 1 16259110 16259110 G A SPEN Silent p.E2125E 0.22 TCGA-34-8454-01 1 16259467 16259467 G C SPEN Missense_Mutation p.Q2244H 0.20 possibly_damaging(0.736) TCGA-34-8454-01 1 16259633 16259633 G T SPEN Nonsense_Mutation p.E2300* 0.22 TCGA-34-8454-01 1 16259794 16259794 G C SPEN Missense_Mutation p.E2353D 0.14 benign(0.005) TCGA-34-8454-01 1 16259846 16259846 G A SPEN Missense_Mutation p.E2371K 0.15 benign(0.002) TCGA-34-8454-01 1 16259893 16259893 G C SPEN Missense_Mutation p.Q2386H 0.19 benign(0.002) TCGA-34-8454-01 1 16261201 16261201 G A SPEN Silent p.Q2822Q 0.22 TCGA-34-8454-01 1 16803506 16803506 C T CROCCP3 RNA 0.26 TCGA-34-8454-01 1 171958183 171958183 C T DNM3 Nonsense_Mutation p.Q162* 0.19 TCGA-34-8454-01 1 179638523 179638523 A G TDRD5 Silent p.E948E 0.17 TCGA-34-8454-01 1 185704097 185704097 G C HMCN1 Silent p.G62G 0.20 TCGA-34-8454-01 1 190067293 190067293 C T BRINP3 Missense_Mutation p.R719H 0.20 tolerated(0.19) benign(0.002) TCGA-34-8454-01 1 19585295 19585295 G A MRTO4 Missense_Mutation p.E231K 0.14 tolerated(0.19) unknown(0) TCGA-34-8454-01 1 197112121 197112121 G C ASPM Missense_Mutation p.Q421E 0.20 tolerated(0.3) benign(0.035) TCGA-34-8454-01 1 197112273 197112273 G C ASPM Missense_Mutation p.S370C 0.21 deleterious(0) probably_damaging(0.959) TCGA-34-8454-01 1 20097871 20097871 C T TMCO4 Missense_Mutation p.G95E 0.27 tolerated(0.08) benign(0.079) TCGA-34-8454-01 1 206619637 206619637 G A SRGAP2 Silent p.E611E 0.20 TCGA-34-8454-01 1 207014402 207014402 C A IL19 Silent p.V177V 0.18 TCGA-34-8454-01 1 207076460 207076460 C T IL24 3'UTR 0.24 TCGA-34-8454-01 1 207317180 207317180 G C C4BPA Missense_Mutation p.E488Q 0.25 tolerated(0.07) possibly_damaging(0.904) TCGA-34-8454-01 1 20991007 20991007 T C KIF17 3'UTR 0.24 TCGA-34-8454-01 1 211093260 211093260 C A KCNH1 Missense_Mutation p.C395F 0.19 deleterious(0) probably_damaging(1) TCGA-34-8454-01 1 211192305 211192305 G T KCNH1 Silent p.P284P 0.22 TCGA-34-8454-01 1 21167354 21167354 G C EIF4G3 Missense_Mutation p.F1302L 0.22 tolerated(0.24) benign(0.208) TCGA-34-8454-01 1 212141996 212141996 G C INTS7 Silent p.L623L 0.11 TCGA-34-8454-01 1 216011390 216011390 G C USH2A Missense_Mutation p.T3105S 0.17 probably_damaging(0.999) TCGA-34-8454-01 1 216051152 216051152 G T USH2A Missense_Mutation p.H2877N 0.24 possibly_damaging(0.568) TCGA-34-8454-01 1 224607285 224607285 C A WDR26 Missense_Mutation p.R266L 0.18 tolerated(0.65) benign(0.03) TCGA-34-8454-01 1 229596468 229596468 C A NUP133 Missense_Mutation p.G912C 0.16 deleterious(0) probably_damaging(0.999) TCGA-34-8454-01 1 235611710 235611710 C G TBCE Silent p.L482L 0.17 TCGA-34-8454-01 1 237798272 237798272 C A RYR2 Missense_Mutation p.R2258S 0.44 possibly_damaging(0.84) TCGA-34-8454-01 1 237982396 237982396 G A RYR2 Missense_Mutation p.E4832K 0.25 possibly_damaging(0.881) TCGA-34-8454-01 1 240371710 240371710 C A FMN2 Missense_Mutation p.P1200T 0.41 unknown(0) TCGA-34-8454-01 1 24398468 24398468 T A MYOM3 Nonsense_Mutation p.R1002* 0.17 TCGA-34-8454-01 1 27875270 27875270 C A AHDC1 Missense_Mutation p.W1119C 0.19 deleterious(0) possibly_damaging(0.878) TCGA-34-8454-01 1 32201146 32201146 C A BAI2 Intron 0.14 TCGA-34-8454-01 1 33548036 33548036 C T ADC Intron 0.38 TCGA-34-8454-01 1 34554721 34554721 G - CSMD2 Frame_Shift_Del p.N48Ifs*264 0.13 TCGA-34-8454-01 1 38348566 38348566 G A INPP5B Silent p.L448L 0.17 TCGA-34-8454-01 1 40887645 40887645 C T SMAP2 Intron 0.18 TCGA-34-8454-01 1 40887711 40887711 T G SMAP2 Missense_Mutation p.S410A 0.20 tolerated(0.28) benign(0.112) TCGA-34-8454-01 1 40887712 40887712 C G SMAP2 Nonsense_Mutation p.S410* 0.19 TCGA-34-8454-01 1 44438185 44438185 G A DPH2 Missense_Mutation p.A482T 0.23 deleterious(0.01) benign(0.137) TCGA-34-8454-01 1 47398249 47398249 C A CYP4A11 Intron 0.21 TCGA-34-8454-01 1 47882374 47882374 C T FOXE3 Silent p.F129F 0.19 TCGA-34-8454-01 1 52854235 52854235 C A ORC1 Missense_Mutation p.S421I 0.20 deleterious(0) benign(0.126) TCGA-34-8454-01 1 52897129 52897129 C T ZCCHC11 Missense_Mutation p.E1423K 0.17 deleterious(0.01) benign(0.128) TCGA-34-8454-01 1 53245549 53245549 C G ZYG11B Missense_Mutation p.Q326E 0.24 deleterious(0) benign(0.063) TCGA-34-8454-01 1 57536722 57536722 C A DAB1 Nonsense_Mutation p.E191* 0.09 TCGA-34-8454-01 1 6142252 6142252 C T KCNAB2 Intron 0.13 TCGA-34-8454-01 1 65891030 65891030 C G LEPROT Missense_Mutation p.L21V 0.33 tolerated(0.17) possibly_damaging(0.889) TCGA-34-8454-01 1 66102451 66102451 C G LEPR Nonsense_Mutation p.S1084* 0.17 TCGA-34-8454-01 1 75065576 75065576 C A C1orf173 Missense_Mutation p.G510V 0.17 deleterious(0.04) benign(0.019) TCGA-34-8454-01 1 79095433 79095433 A G IFI44L Missense_Mutation p.R186G 0.14 deleterious(0.03) benign(0.403) TCGA-34-8454-01 1 79120862 79120862 G T IFI44 Missense_Mutation p.V220L 0.27 deleterious(0.01) possibly_damaging(0.708) TCGA-34-8454-01 1 85406651 85406651 G A MCOLN2 Silent p.L291L 0.20 TCGA-34-8454-01 1 91405113 91405113 C A ZNF644 Missense_Mutation p.V600F 0.13 deleterious(0.01) benign(0.082) TCGA-34-8454-01 1 94939320 94939320 A G ABCD3 Splice_Site p.X112_splice 0.17 TCGA-34-8454-01 20 139420 139420 G T DEFB127 Nonsense_Mutation p.E19* 0.07 TCGA-34-8454-01 20 1616878 1616878 C T SIRPG Missense_Mutation p.G235E 0.23 deleterious(0.03) benign(0.34) TCGA-34-8454-01 20 17929707 17929707 C A SNX5 Splice_Site p.X277_splice 0.17 TCGA-34-8454-01 20 209973 209973 G T DEFB129 Missense_Mutation p.C38F 0.16 deleterious(0) probably_damaging(1) TCGA-34-8454-01 20 21687002 21687002 C T PAX1 Intron 0.31 TCGA-34-8454-01 20 2312685 2312685 G - TGM3 Frame_Shift_Del p.K459Nfs*29 0.18 TCGA-34-8454-01 20 23549119 23549119 C A CST9L 5'UTR 0.36 TCGA-34-8454-01 20 30193293 30193293 C G ID1 Missense_Mutation p.L35V 0.20 tolerated(0.09) probably_damaging(0.952) TCGA-34-8454-01 20 30193843 30193843 C A ID1 Intron 0.18 TCGA-34-8454-01 20 33442601 33442601 C A GGT7 Nonsense_Mutation p.E410* 0.06 TCGA-34-8454-01 20 36640076 36640076 T C TTI1 Missense_Mutation p.T715A 0.21 tolerated(1) benign(0.005) TCGA-34-8454-01 20 40033853 40033853 C A CHD6 Nonsense_Mutation p.E2510* 0.20 TCGA-34-8454-01 20 42683113 42683113 G C TOX2 Missense_Mutation p.V276L 0.24 deleterious(0) probably_damaging(0.98) TCGA-34-8454-01 20 43927132 43927132 C T MATN4 Silent p.V368V 0.17 TCGA-34-8454-01 20 45905281 45905281 G C ZMYND8 Silent p.L419L 0.15 TCGA-34-8454-01 20 45905504 45905504 G C ZMYND8 Missense_Mutation p.S345C 0.20 deleterious(0.02) benign(0.13) TCGA-34-8454-01 20 50418815 50418815 C G SALL4 Intron 0.24 TCGA-34-8454-01 20 61834126 61834126 C A YTHDF1 Missense_Mutation p.G389V 0.17 deleterious(0.03) probably_damaging(0.982) TCGA-34-8454-01 20 62616336 62616336 C T PRPF6 Missense_Mutation p.A106V 0.36 deleterious(0.04) benign(0.102) TCGA-34-8454-01 20 746434 746434 G A SLC52A3 5'UTR 0.28 TCGA-34-8454-01 20 7886879 7886879 G T HAO1 Missense_Mutation p.P215T 0.16 tolerated(0.11) benign(0.338) TCGA-34-8454-01 21 46031993 46031993 C G TSPEAR Intron 0.27 TCGA-34-8454-01 21 46032748 46032748 C A KRTAP10-8 Missense_Mutation p.S244Y 0.31 deleterious(0.01) unknown(0) TCGA-34-8454-01 22 17447233 17447233 G T GAB4 Missense_Mutation p.L349M 0.19 tolerated(0.07) possibly_damaging(0.86) TCGA-34-8454-01 22 17447234 17447234 G T GAB4 Silent p.G348G 0.20 TCGA-34-8454-01 22 19197846 19197846 G A CLTCL1 Missense_Mutation p.S1080L 0.21 tolerated(0.17) probably_damaging(0.952) TCGA-34-8454-01 22 19708135 19708135 C A SEPT5 Silent p.L187L 0.24 TCGA-34-8454-01 22 20936960 20936960 G T MED15 Silent p.P445P 0.25 TCGA-34-8454-01 22 24909375 24909375 C A UPB1 Silent p.A181A 0.23 TCGA-34-8454-01 22 36714309 36714309 G A MYH9 Silent p.L390L 0.17 TCGA-34-8454-01 22 38512133 38512133 C T PLA2G6 Missense_Mutation p.E610K 0.17 tolerated(0.17) benign(0.192) TCGA-34-8454-01 22 39262739 39262739 C G CBX6 Silent p.P238P 0.06 TCGA-34-8454-01 22 40061942 40061942 C A CACNA1I Missense_Mutation p.N1345K 0.20 deleterious(0) possibly_damaging(0.728) TCGA-34-8454-01 22 43460248 43460248 C G TTLL1 Missense_Mutation p.D196H 0.19 deleterious(0.04) probably_damaging(0.967) TCGA-34-8454-01 2 10186520 10186520 A G KLF11 Missense_Mutation p.K96E 0.14 deleterious(0) possibly_damaging(0.521) TCGA-34-8454-01 2 102507823 102507823 G A MAP4K4 3'Flank 0.36 TCGA-34-8454-01 2 109113461 109113461 G C GCC2 Missense_Mutation p.E1560Q 0.19 tolerated(0.07) probably_damaging(0.994) TCGA-34-8454-01 2 120194985 120194985 A T TMEM37 Missense_Mutation p.H181L 0.23 deleterious(0) possibly_damaging(0.885) TCGA-34-8454-01 2 138421145 138421145 G T THSD7B Missense_Mutation p.D1554Y 0.20 deleterious(0.01) unknown(0) TCGA-34-8454-01 2 140990866 140990866 T C LRP1B Silent p.A4563A 0.09 TCGA-34-8454-01 2 145157364 145157364 G T ZEB2 Missense_Mutation p.L464I 0.17 deleterious(0) probably_damaging(0.997) TCGA-34-8454-01 2 1500376 1500376 G A TPO Missense_Mutation p.C742Y 0.19 deleterious(0.02) possibly_damaging(0.704) TCGA-34-8454-01 2 152483560 152483560 G - NEB Frame_Shift_Del p.L3435* 0.13 TCGA-34-8454-01 2 160084446 160084446 C G TANC1 Silent p.L1340L 0.17 TCGA-34-8454-01 2 160304798 160304798 G A BAZ2B Missense_Mutation p.H153Y 0.22 benign(0.152) TCGA-34-8454-01 2 164466201 164466201 G A FIGN Missense_Mutation p.S714L 0.17 tolerated(0.14) benign(0.078) TCGA-34-8454-01 2 166172208 166172208 C A SCN2A Missense_Mutation p.F537L 0.22 tolerated(0.16) benign(0.185) TCGA-34-8454-01 2 167108323 167108323 C G SCN9A Missense_Mutation p.E1131Q 0.08 tolerated(0.42) benign(0.152) TCGA-34-8454-01 2 171070933 171070933 C G MYO3B Silent p.L122L 0.15 TCGA-34-8454-01 2 171225843 171225843 G A MYO3B Silent p.K309K 0.19 TCGA-34-8454-01 2 171702233 171702233 G C GAD1 Missense_Mutation p.K295N 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-34-8454-01 2 173891910 173891910 C A RAPGEF4 Silent p.V827V 0.18 TCGA-34-8454-01 2 177016385 177016385 G A HOXD4 Silent p.V8V 0.19 TCGA-34-8454-01 2 179407427 179407427 G T TTN Missense_Mutation p.T32385N 0.19 TCGA-34-8454-01 2 179419728 179419728 C T TTN Silent p.L29486L 0.24 TCGA-34-8454-01 2 179579788 179579788 C T TTN Missense_Mutation p.D8709N 0.22 TCGA-34-8454-01 2 185802780 185802780 T C ZNF804A Missense_Mutation p.L886P 0.18 tolerated(0.9) benign(0) TCGA-34-8454-01 2 191161632 191161632 T A HIBCH Missense_Mutation p.K42N 0.24 tolerated(0.29) benign(0.006) TCGA-34-8454-01 2 196718110 196718110 C A DNAH7 Missense_Mutation p.G2913V 0.23 deleterious(0) probably_damaging(0.994) TCGA-34-8454-01 2 202719627 202719627 C A CDK15 Missense_Mutation p.P326T 0.25 deleterious(0.01) probably_damaging(0.976) TCGA-34-8454-01 2 204110612 204110612 A T CYP20A1 Missense_Mutation p.E39V 0.25 deleterious(0.01) benign(0.09) TCGA-34-8454-01 2 209358071 209358071 G C PTH2R Missense_Mutation p.R447T 0.33 tolerated(0.2) possibly_damaging(0.886) TCGA-34-8454-01 2 211019270 211019270 T C KANSL1L Missense_Mutation p.I13V 0.20 tolerated(0.72) benign(0.018) TCGA-34-8454-01 2 21233517 21233517 C G APOB Missense_Mutation p.E2075Q 0.46 benign(0.003) TCGA-34-8454-01 2 219603656 219603656 C T TTLL4 Silent p.I419I 0.23 TCGA-34-8454-01 2 220136510 220136510 T C TUBA4B RNA 0.21 TCGA-34-8454-01 2 220348761 220348761 A T SPEG Silent p.A2192A 0.15 TCGA-34-8454-01 2 222294724 222294724 T A EPHA4 Missense_Mutation p.I882F 0.26 deleterious(0) possibly_damaging(0.733) TCGA-34-8454-01 2 227872866 227872866 G A COL4A4 Silent p.I1559I 0.23 TCGA-34-8454-01 2 234431956 234431956 G A USP40 Silent p.V698V 0.21 TCGA-34-8454-01 2 238303395 238303395 C T COL6A3 Missense_Mutation p.E182K 0.22 probably_damaging(0.977) TCGA-34-8454-01 2 241500167 241500167 C G ANKMY1 5'Flank 0.38 TCGA-34-8454-01 2 242128095 242128095 G A ANO7 Silent p.V23V 0.24 TCGA-34-8454-01 2 25982476 25982476 C T ASXL2 Missense_Mutation p.E272K 0.15 deleterious(0) probably_damaging(1) TCGA-34-8454-01 2 27552113 27552113 G C GTF3C2 Missense_Mutation p.I638M 0.19 deleterious(0) probably_damaging(0.959) TCGA-34-8454-01 2 28004348 28004348 G C RBKS 3'UTR 0.42 TCGA-34-8454-01 2 28210873 28210873 C G BRE Missense_Mutation p.F73L 0.13 deleterious(0.03) probably_damaging(0.987) TCGA-34-8454-01 2 43571337 43571337 C A THADA Nonsense_Mutation p.G1423* 0.27 TCGA-34-8454-01 2 45648 45648 G A FAM110C Silent p.L246L 0.20 TCGA-34-8454-01 2 46770201 46770201 G T RHOQ Missense_Mutation p.G6C 0.26 deleterious_low_confidence(0) possibly_damaging(0.649) TCGA-34-8454-01 2 64335463 64335463 C T PELI1 5'UTR 0.17 TCGA-34-8454-01 2 73675659 73675659 C T ALMS1 Missense_Mutation p.H668Y 0.20 benign(0.001) TCGA-34-8454-01 2 85536506 85536506 C T TCF7L1 Missense_Mutation p.P563L 0.22 tolerated_low_confidence(0.13) benign(0.036) TCGA-34-8454-01 2 89459437 89459437 C G IGKV6-21 Missense_Mutation p.S47T 0.27 deleterious(0.02) possibly_damaging(0.569) TCGA-34-8454-01 2 97268519 97268519 C T KANSL3 Missense_Mutation p.A744T 0.30 tolerated_low_confidence(0.07) benign(0.003) TCGA-34-8454-01 3 112643992 112643992 A G CD200R1 Missense_Mutation p.L273P 0.10 tolerated(0.35) probably_damaging(0.991) TCGA-34-8454-01 3 119102066 119102066 G A ARHGAP31 Silent p.E225E 0.22 TCGA-34-8454-01 3 12618156 12618156 C G MKRN2 Nonsense_Mutation p.S295* 0.30 TCGA-34-8454-01 3 128621393 128621393 C T ACAD9 Intron 0.24 TCGA-34-8454-01 3 132166201 132166201 G A DNAJC13 Missense_Mutation p.G61R 0.17 tolerated(0.56) benign(0.009) TCGA-34-8454-01 3 133362954 133362954 C G TOPBP1 Silent p.L586L 0.23 TCGA-34-8454-01 3 133363010 133363010 C T TOPBP1 Missense_Mutation p.E568K 0.16 tolerated(0.09) benign(0.011) TCGA-34-8454-01 3 133363044 133363044 C G TOPBP1 Missense_Mutation p.K556N 0.12 deleterious(0) probably_damaging(0.989) TCGA-34-8454-01 3 142204113 142204113 C A ATR Silent p.A2030A 0.28 TCGA-34-8454-01 3 147128488 147128488 T C ZIC1 Missense_Mutation p.Y197H 0.16 tolerated(0.1) probably_damaging(0.98) TCGA-34-8454-01 3 16269070 16269070 A G GALNT15 3'UTR 0.42 TCGA-34-8454-01 3 164908184 164908184 G T SLITRK3 Missense_Mutation p.F145L 0.11 deleterious(0) probably_damaging(0.986) TCGA-34-8454-01 3 170716922 170716922 G C SLC2A2 Missense_Mutation p.L368V 0.14 deleterious(0.01) probably_damaging(0.951) TCGA-34-8454-01 3 178936091 178936091 G C PIK3CA Missense_Mutation p.E545Q 0.09 tolerated(0.06) possibly_damaging(0.796) TCGA-34-8454-01 3 183472008 183472008 G C YEATS2 Missense_Mutation p.Q415H 0.16 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-34-8454-01 3 183665291 183665291 C T ABCC5 Missense_Mutation p.E1079K 0.15 tolerated(0.78) benign(0.017) TCGA-34-8454-01 3 186450336 186450336 C A KNG1 Missense_Mutation p.P268H 0.17 deleterious(0) probably_damaging(0.999) TCGA-34-8454-01 3 186507806 186507806 G T RFC4 Silent p.L348L 0.16 TCGA-34-8454-01 3 187003787 187003787 G T MASP1 Silent p.T21T 0.13 TCGA-34-8454-01 3 190345163 190345163 C G IL1RAP Missense_Mutation p.S276C 0.09 deleterious(0) possibly_damaging(0.893) TCGA-34-8454-01 3 196434548 196434548 T A CEP19 Missense_Mutation p.E126D 0.13 tolerated(0.13) probably_damaging(0.998) TCGA-34-8454-01 3 3072633 3072633 C G CNTN4 Missense_Mutation p.S586C 0.21 deleterious(0) possibly_damaging(0.903) TCGA-34-8454-01 3 30875769 30875769 G C GADL1 Missense_Mutation p.S303C 0.25 tolerated(0.11) benign(0.029) TCGA-34-8454-01 3 48224475 48224475 C T CDC25A Missense_Mutation p.D125N 0.20 tolerated(0.28) probably_damaging(0.999) TCGA-34-8454-01 3 5249814 5249814 C A EDEM1 Missense_Mutation p.H459N 0.30 deleterious(0.01) probably_damaging(1) TCGA-34-8454-01 3 5252878 5252878 G C EDEM1 Missense_Mutation p.E553Q 0.33 deleterious(0) probably_damaging(1) TCGA-34-8454-01 3 63981744 63981744 C T ATXN7 Missense_Mutation p.T749M 0.21 deleterious(0.01) benign(0.039) TCGA-34-8454-01 3 71830737 71830737 C T PROK2 Missense_Mutation p.D35N 0.29 tolerated(0.14) benign(0.119) TCGA-34-8454-01 3 98073564 98073564 G C OR5K4 Silent p.L289L 0.17 TCGA-34-8454-01 3 98240538 98240538 C A CLDND1 Missense_Mutation p.D4Y 0.21 deleterious_low_confidence(0.01) benign(0.071) TCGA-34-8454-01 4 107246153 107246153 G T AIMP1 Missense_Mutation p.R20L 0.34 deleterious(0.03) benign(0.156) TCGA-34-8454-01 4 107845132 107845132 G T DKK2 Silent p.L253L 0.21 TCGA-34-8454-01 4 109663674 109663674 G T ETNPPL Missense_Mutation p.T489K 0.19 tolerated_low_confidence(1) benign(0.001) TCGA-34-8454-01 4 110402907 110402907 G T SEC24B Nonsense_Mutation p.E379* 0.28 TCGA-34-8454-01 4 126401003 126401003 G T FAT4 Missense_Mutation p.G4194V 0.17 possibly_damaging(0.523) TCGA-34-8454-01 4 128608867 128608867 G T INTU Missense_Mutation p.D432Y 0.17 deleterious(0) probably_damaging(0.984) TCGA-34-8454-01 4 155507386 155507386 C A FGA Missense_Mutation p.G399C 0.20 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-34-8454-01 4 169182099 169182099 C G DDX60 Missense_Mutation p.L1105F 0.15 tolerated(0.7) benign(0.001) TCGA-34-8454-01 4 169300557 169300557 G C DDX60L Silent p.L1440L 0.23 TCGA-34-8454-01 4 169432842 169432842 G C PALLD Missense_Mutation p.E63Q 0.19 tolerated(0.06) probably_damaging(0.93) TCGA-34-8454-01 4 175416770 175416770 T C HPGD Missense_Mutation p.M143V 0.27 tolerated(0.5) benign(0.001) TCGA-34-8454-01 4 187171556 187171556 G T KLKB1 Missense_Mutation p.R253I 0.19 deleterious(0) probably_damaging(1) TCGA-34-8454-01 4 25664391 25664391 G C SLC34A2 Silent p.L59L 0.22 TCGA-34-8454-01 4 26661273 26661273 A G TBC1D19 Missense_Mutation p.R179G 0.08 tolerated(0.39) benign(0.013) TCGA-34-8454-01 4 3133098 3133098 C T HTT Missense_Mutation p.S691L 0.18 possibly_damaging(0.734) TCGA-34-8454-01 4 36214922 36214922 T G ARAP2 Silent p.S328S 0.14 TCGA-34-8454-01 4 40440760 40440760 C A RBM47 Missense_Mutation p.G51W 0.20 deleterious(0) probably_damaging(0.999) TCGA-34-8454-01 4 4322387 4322387 G T ZBTB49 Missense_Mutation p.G548C 0.22 deleterious(0) possibly_damaging(0.77) TCGA-34-8454-01 4 48384633 48384633 C T SLAIN2 Missense_Mutation p.S304L 0.24 tolerated(0.08) probably_damaging(0.99) TCGA-34-8454-01 4 52896001 52896001 C A SGCB Missense_Mutation p.R91L 0.22 deleterious(0.01) probably_damaging(0.966) TCGA-34-8454-01 4 5586405 5586405 G A EVC2 Missense_Mutation p.A1001V 0.12 tolerated(0.22) benign(0.003) TCGA-34-8454-01 4 5617155 5617155 C A EVC2 Silent p.V941V 0.23 TCGA-34-8454-01 4 56458306 56458306 C T PDCL2 5'UTR 0.17 TCGA-34-8454-01 4 56458307 56458307 G T PDCL2 5'UTR 0.18 TCGA-34-8454-01 4 56757523 56757523 G A EXOC1 Missense_Mutation p.A528T 0.23 tolerated(0.08) benign(0.431) TCGA-34-8454-01 4 6042366 6042366 C A JAKMIP1 Silent p.L725L 0.17 TCGA-34-8454-01 4 72425871 72425871 G T SLC4A4 Missense_Mutation p.S1000I 0.26 deleterious(0.01) benign(0.13) TCGA-34-8454-01 4 76407840 76407840 G C RCHY1 Missense_Mutation p.Q232E 0.07 tolerated(0.71) benign(0.101) TCGA-34-8454-01 4 80246774 80246774 C A NAA11 Silent p.L86L 0.15 TCGA-34-8454-01 4 82064015 82064015 G A PRKG2 Missense_Mutation p.S447L 0.20 tolerated(0.05) benign(0.086) TCGA-34-8454-01 4 87695631 87695631 C A PTPN13 Missense_Mutation p.Q1824K 0.36 deleterious(0) probably_damaging(0.998) TCGA-34-8454-01 4 89668100 89668100 T G FAM13A Missense_Mutation p.S817R 0.22 deleterious(0) probably_damaging(0.955) TCGA-34-8454-01 5 1219752 1219752 C T SLC6A19 Missense_Mutation p.S504F 0.19 deleterious(0) possibly_damaging(0.797) TCGA-34-8454-01 5 132222085 132222085 C A AFF4 Nonsense_Mutation p.E1006* 0.28 TCGA-34-8454-01 5 137426638 137426638 G T WNT8A Missense_Mutation p.S311I 0.19 deleterious(0) probably_damaging(0.932) TCGA-34-8454-01 5 137726784 137726784 G A KDM3B Missense_Mutation p.G488E 0.31 tolerated_low_confidence(0.1) benign(0.255) TCGA-34-8454-01 5 137727565 137727565 G C KDM3B Missense_Mutation p.E748D 0.27 tolerated_low_confidence(0.2) benign(0.011) TCGA-34-8454-01 5 140076610 140076610 A G HARS2 Silent p.L303L 0.28 TCGA-34-8454-01 5 140229339 140229339 C - PCDHA9 Frame_Shift_Del p.Y421Tfs*28 0.24 TCGA-34-8454-01 5 140558932 140558932 C G PCDHB8 Silent p.T439T 0.22 TCGA-34-8454-01 5 140755326 140755326 C G PCDHGA6 Missense_Mutation p.A559G 0.26 deleterious_low_confidence(0) possibly_damaging(0.491) TCGA-34-8454-01 5 140810936 140810936 G C PCDHGA12 Missense_Mutation p.E204Q 0.22 tolerated_low_confidence(0.06) possibly_damaging(0.517) TCGA-34-8454-01 5 148930423 148930423 G A CSNK1A1 Silent p.I35I 0.27 TCGA-34-8454-01 5 149433917 149433917 G A CSF1R Nonsense_Mutation p.Q911* 0.31 TCGA-34-8454-01 5 149644527 149644527 G T CAMK2A Missense_Mutation p.P70H 0.19 deleterious_low_confidence(0.01) benign(0.06) TCGA-34-8454-01 5 149644537 149644537 G T CAMK2A Missense_Mutation p.L67M 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-34-8454-01 5 154395859 154395859 G T KIF4B Missense_Mutation p.D814Y 0.14 tolerated(0.06) benign(0.008) TCGA-34-8454-01 5 161495075 161495075 A T GABRG2 Missense_Mutation p.T24S 0.19 tolerated_low_confidence(0.83) benign(0.062) TCGA-34-8454-01 5 161576318 161576318 C T GABRG2 Missense_Mutation p.P416L 0.36 deleterious(0.04) probably_damaging(1) TCGA-34-8454-01 5 16701659 16701659 C T MYO10 Missense_Mutation p.E949K 0.09 tolerated_low_confidence(0.06) probably_damaging(0.981) TCGA-34-8454-01 5 180166455 180166455 G T OR2Y1 Silent p.R202R 0.28 TCGA-34-8454-01 5 180419814 180419814 A G BTNL3 Silent p.G17G 0.25 TCGA-34-8454-01 5 180669341 180669341 C G GNB2L1 Missense_Mutation p.K38N 0.34 tolerated(0.08) benign(0.089) TCGA-34-8454-01 5 31313510 31313510 G A CDH6 Missense_Mutation p.D447N 0.19 deleterious(0) probably_damaging(0.996) TCGA-34-8454-01 5 33637759 33637759 C G ADAMTS12 Missense_Mutation p.R604P 0.15 deleterious(0.01) probably_damaging(1) TCGA-34-8454-01 5 38996959 38996959 C T RICTOR Missense_Mutation p.E140K 0.11 deleterious(0.01) probably_damaging(0.943) TCGA-34-8454-01 5 40854270 40854270 C G CARD6 Missense_Mutation p.Q946E 0.19 deleterious(0) possibly_damaging(0.725) TCGA-34-8454-01 5 56180548 56180548 G C MAP3K1 Missense_Mutation p.E1293Q 0.20 deleterious(0.05) probably_damaging(0.973) TCGA-34-8454-01 5 6337280 6337280 C A CTD-2324F15.2 RNA 0.21 TCGA-34-8454-01 5 70308473 70308473 C G NAIP Silent p.G90G 0.08 TCGA-34-8454-01 5 71494982 71494982 G A MAP1B Missense_Mutation p.E1934K 0.13 possibly_damaging(0.848) TCGA-34-8454-01 5 79030755 79030755 C T CMYA5 Missense_Mutation p.S2056L 0.34 benign(0.039) TCGA-34-8454-01 5 88047743 88047743 G A MEF2C Missense_Mutation p.H192Y 0.29 deleterious(0.01) probably_damaging(0.995) TCGA-34-8454-01 5 96098819 96098819 T G ERAP1 3'UTR 0.19 TCGA-34-8454-01 6 10764647 10764647 C G MAK 3'UTR 0.32 TCGA-34-8454-01 6 111543327 111543327 G A SLC16A10 Silent p.E479E 0.09 TCGA-34-8454-01 6 117150074 117150074 G T GPRC6A Missense_Mutation p.H35N 0.20 tolerated(0.28) benign(0.01) TCGA-34-8454-01 6 135263647 135263647 G A ALDH8A1 Silent p.F114F 0.27 TCGA-34-8454-01 6 135521446 135521446 C G MYB Missense_Mutation p.L615V 0.26 tolerated(0.08) benign(0.045) TCGA-34-8454-01 6 137322820 137322820 C A IL20RA Nonsense_Mutation p.G513* 0.24 TCGA-34-8454-01 6 151917564 151917564 G T CCDC170 Missense_Mutation p.R521L 0.21 deleterious(0) probably_damaging(0.93) TCGA-34-8454-01 6 152647469 152647469 C G SYNE1 Missense_Mutation p.M5085I 0.22 benign(0) TCGA-34-8454-01 6 152652856 152652856 C G SYNE1 Missense_Mutation p.E4322Q 0.16 probably_damaging(0.998) TCGA-34-8454-01 6 152730275 152730275 C T SYNE1 Silent p.L2156L 0.18 TCGA-34-8454-01 6 153075406 153075406 C A VIP Silent p.P71P 0.21 TCGA-34-8454-01 6 153077372 153077372 T A VIP Missense_Mutation p.L147M 0.27 deleterious(0) probably_damaging(1) TCGA-34-8454-01 6 159407335 159407335 C G RSPH3 Missense_Mutation p.R250T 0.15 deleterious(0) probably_damaging(0.999) TCGA-34-8454-01 6 159420659 159420659 G C RSPH3 Missense_Mutation p.S117C 0.09 deleterious_low_confidence(0) possibly_damaging(0.817) TCGA-34-8454-01 6 160211589 160211589 G C MRPL18 5'UTR 0.17 TCGA-34-8454-01 6 16254899 16254899 G C GMPR Missense_Mutation p.G133A 0.19 deleterious(0.02) possibly_damaging(0.907) TCGA-34-8454-01 6 168281197 168281197 G T MLLT4 Silent p.R299R 0.21 TCGA-34-8454-01 6 169621571 169621571 C T THBS2 Missense_Mutation p.A1109T 0.14 deleterious(0) probably_damaging(0.988) TCGA-34-8454-01 6 24145937 24145937 G T NRSN1 Silent p.L117L 0.27 TCGA-34-8454-01 6 27424700 27424700 C G ZNF184 Missense_Mutation p.G68A 0.26 deleterious(0) probably_damaging(0.999) TCGA-34-8454-01 6 27861557 27861557 A T HIST1H2BO Missense_Mutation p.E106V 0.25 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-34-8454-01 6 30043540 30043540 C G RNF39 Silent p.L9L 0.19 TCGA-34-8454-01 6 30303735 30303735 G T TRIM39 Missense_Mutation p.G255C 0.13 tolerated(0.05) probably_damaging(0.976) TCGA-34-8454-01 6 30698750 30698750 C G FLOT1 Missense_Mutation p.R284P 0.21 deleterious(0) benign(0.259) TCGA-34-8454-01 6 3106056 3106056 G T RIPK1 Silent p.V449V 0.26 TCGA-34-8454-01 6 32261652 32261652 C T C6orf10 Silent p.L266L 0.24 TCGA-34-8454-01 6 33632990 33632990 G T ITPR3 Missense_Mutation p.R470M 0.12 deleterious(0) probably_damaging(0.954) TCGA-34-8454-01 6 35838127 35838127 C G SRPK1 Missense_Mutation p.E308Q 0.11 tolerated(0.17) benign(0.049) TCGA-34-8454-01 6 36334362 36334362 C A ETV7 3'UTR 0.27 TCGA-34-8454-01 6 42224489 42224489 A T TRERF1 Missense_Mutation p.F853I 0.23 deleterious(0.02) benign(0.307) TCGA-34-8454-01 6 43006701 43006701 C T CUL7 Missense_Mutation p.R1524Q 0.18 tolerated(0.7) benign(0.002) TCGA-34-8454-01 6 43324893 43324893 C G ZNF318 Missense_Mutation p.E387Q 0.14 probably_damaging(0.996) TCGA-34-8454-01 6 44221458 44221458 C G HSP90AB1 3'UTR 0.24 TCGA-34-8454-01 6 49666074 49666074 C A CRISP2 Splice_Site p.X139_splice 0.24 TCGA-34-8454-01 6 50696684 50696684 C T TFAP2D Silent p.L238L 0.23 TCGA-34-8454-01 6 51927416 51927416 C A PKHD1 Missense_Mutation p.G340V 0.15 tolerated(0.32) possibly_damaging(0.694) TCGA-34-8454-01 6 55223715 55223715 G T GFRAL Missense_Mutation p.C244F 0.19 deleterious(0) probably_damaging(1) TCGA-34-8454-01 6 74124323 74124323 C A DDX43 Silent p.V553V 0.19 TCGA-34-8454-01 6 74134976 74134976 C G MB21D1 Missense_Mutation p.E515Q 0.24 tolerated(0.17) benign(0.017) TCGA-34-8454-01 6 90354840 90354840 C T MDN1 Missense_Mutation p.R5499Q 0.21 unknown(0) TCGA-34-8454-01 6 99850462 99850462 C T PNISR Nonsense_Mutation p.W427* 0.12 TCGA-34-8454-01 7 100551448 100551448 A C MUC3A Missense_Mutation p.T67P 0.16 tolerated(0.11) possibly_damaging(0.865) TCGA-34-8454-01 7 100799962 100799962 A G AP1S1 Missense_Mutation p.M31V 0.16 tolerated(0.17) benign(0) TCGA-34-8454-01 7 103019744 103019744 A C SLC26A5 Missense_Mutation p.N541K 0.19 deleterious(0) probably_damaging(0.998) TCGA-34-8454-01 7 103234276 103234276 C A RELN Missense_Mutation p.W1255C 0.13 deleterious(0) probably_damaging(0.972) TCGA-34-8454-01 7 103368612 103368612 C T RELN Silent p.A233A 0.19 TCGA-34-8454-01 7 111617301 111617301 T G DOCK4 Missense_Mutation p.Q196P 0.24 tolerated(0.41) benign(0) TCGA-34-8454-01 7 113519988 113519988 C T PPP1R3A Missense_Mutation p.D387N 0.20 tolerated(0.15) benign(0.015) TCGA-34-8454-01 7 115624534 115624534 G T TFEC 5'UTR 0.21 TCGA-34-8454-01 7 11581046 11581047 - A THSD7A Frame_Shift_Ins p.G608Wfs*5 0.16 TCGA-34-8454-01 7 116140472 116140472 C G CAV2 Silent p.L103L 0.15 TCGA-34-8454-01 7 116140484 116140484 C T CAV2 Silent p.L107L 0.15 TCGA-34-8454-01 7 128630054 128630054 C G TNPO3 Missense_Mutation p.E487Q 0.27 deleterious(0.03) possibly_damaging(0.859) TCGA-34-8454-01 7 130418084 130418084 G C KLF14 Silent p.L259L 0.21 TCGA-34-8454-01 7 131196092 131196092 G A PODXL Silent p.P67P 0.26 TCGA-34-8454-01 7 134642826 134642826 G C CALD1 Missense_Mutation p.E648Q 0.25 deleterious(0) probably_damaging(0.994) TCGA-34-8454-01 7 139529153 139529153 A T TBXAS1 5'UTR 0.18 TCGA-34-8454-01 7 142481298 142481298 C T PRSS3P2 RNA 0.29 TCGA-34-8454-01 7 143826311 143826311 C T OR2A14 Missense_Mutation p.L36F 0.16 tolerated(1) benign(0.01) TCGA-34-8454-01 7 146471443 146471443 C A CNTNAP2 Missense_Mutation p.P60T 0.17 deleterious(0) possibly_damaging(0.734) TCGA-34-8454-01 7 14758265 14758265 G C DGKB Missense_Mutation p.S123C 0.11 tolerated(0.07) benign(0.003) TCGA-34-8454-01 7 148876242 148876242 T C ZNF398 Silent p.P426P 0.24 TCGA-34-8454-01 7 149426380 149426380 G C KRBA1 Missense_Mutation p.S576T 0.20 tolerated(0.29) probably_damaging(0.916) TCGA-34-8454-01 7 149500142 149500142 G T SSPO RNA 0.30 TCGA-34-8454-01 7 158718980 158718980 C G WDR60 Missense_Mutation p.S787C 0.17 deleterious(0) possibly_damaging(0.869) TCGA-34-8454-01 7 16650275 16650275 A T ANKMY2 Missense_Mutation p.N215K 0.23 deleterious(0) probably_damaging(1) TCGA-34-8454-01 7 27213737 27213737 G C HOXA10 Silent p.V63V 0.29 TCGA-34-8454-01 7 30825507 30825507 G T FAM188B Nonsense_Mutation p.E188* 0.15 TCGA-34-8454-01 7 38389525 38389525 G T TRGV5 5'UTR 0.21 TCGA-34-8454-01 7 44154359 44154359 C T POLD2 3'UTR 0.11 TCGA-34-8454-01 7 45930205 45930205 T A IGFBP1 Missense_Mutation p.D136E 0.22 tolerated(1) benign(0.001) TCGA-34-8454-01 7 64438197 64438197 G C ZNF117 3'UTR 0.11 TCGA-34-8454-01 7 72903719 72903719 G A BAZ1B Silent p.I232I 0.29 TCGA-34-8454-01 7 73653267 73653267 C G RFC2 Missense_Mutation p.E249Q 0.24 deleterious(0.03) benign(0.064) TCGA-34-8454-01 7 80418674 80418674 C A SEMA3C Silent p.V434V 0.23 TCGA-34-8454-01 7 8126078 8126078 C T GLCCI1 Silent p.A518A 0.17 TCGA-34-8454-01 7 82388013 82388013 C A PCLO Nonsense_Mutation p.G5103* 0.16 TCGA-34-8454-01 7 84671530 84671530 T G SEMA3D Silent p.S311S 0.17 TCGA-34-8454-01 7 87214905 87214905 A G ABCB1 Missense_Mutation p.L70P 0.14 deleterious(0) possibly_damaging(0.884) TCGA-34-8454-01 7 98547814 98547814 C G TRRAP Missense_Mutation p.Q1748E 0.28 benign(0.071) TCGA-34-8454-01 7 99170766 99170766 A G ZNF655 Silent p.L380L 0.23 TCGA-34-8454-01 8 101153339 101153339 C G FBXO43 Silent p.S381S 0.16 TCGA-34-8454-01 8 106646548 106646548 G T ZFPM2 Silent p.V165V 0.56 TCGA-34-8454-01 8 109797143 109797143 G A TMEM74 Missense_Mutation p.S62F 0.16 deleterious(0.02) benign(0.063) TCGA-34-8454-01 8 110523082 110523082 G A PKHD1L1 Silent p.L3824L 0.36 TCGA-34-8454-01 8 110655009 110655009 G T SYBU Silent p.P59P 0.18 TCGA-34-8454-01 8 114326924 114326924 A T CSMD3 Missense_Mutation p.W93R 0.15 deleterious(0) benign(0.103) TCGA-34-8454-01 8 124204049 124204049 G C FAM83A Missense_Mutation p.V163L 0.15 deleterious(0.02) benign(0.006) TCGA-34-8454-01 8 125568646 125568646 C T MTSS1 Missense_Mutation p.D411N 0.13 deleterious(0.04) probably_damaging(0.996) TCGA-34-8454-01 8 12957048 12957048 G C DLC1 Missense_Mutation p.S933W 0.29 deleterious(0) probably_damaging(1) TCGA-34-8454-01 8 14412400 14412400 C A SGCZ Missense_Mutation p.Q25H 0.23 tolerated(0.07) benign(0.001) TCGA-34-8454-01 8 144887442 144887442 C T SCRIB Missense_Mutation p.R837Q 0.27 possibly_damaging(0.766) TCGA-34-8454-01 8 144994430 144994430 C T PLEC Missense_Mutation p.G3324R 0.20 benign(0.008) TCGA-34-8454-01 8 144996950 144996950 C G PLEC Missense_Mutation p.E2520Q 0.14 probably_damaging(0.995) TCGA-34-8454-01 8 145134986 145134986 C T EXOSC4 Silent p.R104R 0.59 TCGA-34-8454-01 8 145689960 145689960 C G CYHR1 Missense_Mutation p.Q43H 0.16 deleterious_low_confidence(0.02) possibly_damaging(0.781) TCGA-34-8454-01 8 145693145 145693145 C G KIFC2 Missense_Mutation p.R222G 0.22 deleterious(0) possibly_damaging(0.723) TCGA-34-8454-01 8 2090318 2090318 G C MYOM2 Missense_Mutation p.E1340D 0.26 deleterious(0.03) possibly_damaging(0.625) TCGA-34-8454-01 8 30700545 30700545 C G TEX15 Missense_Mutation p.E1997Q 0.25 tolerated(0.15) benign(0.341) TCGA-34-8454-01 8 38126436 38126436 G C PPAPDC1B Nonsense_Mutation p.Y49* 0.30 TCGA-34-8454-01 8 38852940 38852941 - AG TM2D2 Intron 0.29 TCGA-34-8454-01 8 56270277 56270277 G C XKR4 Missense_Mutation p.Q282H 0.16 tolerated(0.12) benign(0.093) TCGA-34-8454-01 8 59739411 59739411 G C TOX Silent p.L325L 0.12 TCGA-34-8454-01 8 61121394 61121394 G T CA8 Silent p.R275R 0.15 TCGA-34-8454-01 8 62289226 62289226 C A CLVS1 Missense_Mutation p.P173Q 0.42 tolerated(0.46) benign(0.026) TCGA-34-8454-01 8 6296471 6296471 C G MCPH1 Intron 0.19 TCGA-34-8454-01 8 70650396 70650396 G A SLCO5A1 Silent p.F434F 0.51 TCGA-34-8454-01 8 86049849 86049849 G C LRRCC1 Missense_Mutation p.R827T 0.18 deleterious(0.04) benign(0.027) TCGA-34-8454-01 8 96166313 96166313 G C PLEKHF2 Missense_Mutation p.R14P 0.45 deleterious(0) probably_damaging(1) TCGA-34-8454-01 9 130487128 130487128 G T TTC16 Missense_Mutation p.R404L 0.44 deleterious(0) possibly_damaging(0.633) TCGA-34-8454-01 9 131219710 131219710 C A ODF2 Missense_Mutation p.S9Y 0.15 deleterious_low_confidence(0.01) benign(0.193) TCGA-34-8454-01 9 132382787 132382787 C T C9orf50 Missense_Mutation p.D23N 0.47 tolerated(0.94) possibly_damaging(0.728) TCGA-34-8454-01 9 136226921 136226921 C T SURF2 Missense_Mutation p.R145C 0.33 benign(0.018) TCGA-34-8454-01 9 139837106 139837106 C G FBXW5 Missense_Mutation p.D190H 0.16 deleterious(0) probably_damaging(0.923) TCGA-34-8454-01 9 139934186 139934186 G C NPDC1 3'UTR 0.48 TCGA-34-8454-01 9 140058070 140058070 G A GRIN1 Missense_Mutation p.C819Y 0.23 deleterious(0) probably_damaging(0.978) TCGA-34-8454-01 9 141006957 141006957 C A CACNA1B Missense_Mutation p.P1846T 0.33 tolerated(0.21) benign(0.398) TCGA-34-8454-01 9 15591540 15591540 G T CCDC171 Nonsense_Mutation p.E177* 0.21 TCGA-34-8454-01 9 32634440 32634440 C T TAF1L Missense_Mutation p.G380R 0.22 deleterious(0.04) possibly_damaging(0.757) TCGA-34-8454-01 9 35370337 35370337 A T UNC13B Missense_Mutation p.I413F 0.26 deleterious(0) probably_damaging(0.997) TCGA-34-8454-01 9 40705471 40705471 C A SPATA31A3 Missense_Mutation p.P1043H 0.70 deleterious(0.02) probably_damaging(0.957) TCGA-34-8454-01 9 75531983 75531983 G A ALDH1A1 Silent p.F296F 0.38 TCGA-34-8454-01 X 100103662 100103662 T A NOX1 Missense_Mutation p.M509L 0.17 deleterious(0.05) benign(0.043) TCGA-34-8454-01 X 100613602 100613602 C T BTK Intron 0.22 TCGA-34-8454-01 X 100808005 100808005 G C ARMCX1 Missense_Mutation p.R31T 0.15 deleterious_low_confidence(0) benign(0.101) TCGA-34-8454-01 X 10166061 10166061 G C CLCN4 Missense_Mutation p.R172P 0.29 deleterious(0) possibly_damaging(0.889) TCGA-34-8454-01 X 107814687 107814687 G T COL4A5 Missense_Mutation p.Q143H 0.17 unknown(0) TCGA-34-8454-01 X 109693825 109693825 T C RGAG1 5'UTR 0.21 TCGA-34-8454-01 X 109695851 109695851 C T RGAG1 Missense_Mutation p.S669L 0.19 tolerated(0.17) benign(0) TCGA-34-8454-01 X 114141227 114141227 T A HTR2C Missense_Mutation p.L209H 0.24 deleterious(0) probably_damaging(0.996) TCGA-34-8454-01 X 117714071 117714071 G T DOCK11 Missense_Mutation p.K508N 0.26 deleterious(0) probably_damaging(0.942) TCGA-34-8454-01 X 119388306 119388306 C A ZBTB33 Missense_Mutation p.P346T 0.24 tolerated(0.1) benign(0.437) TCGA-34-8454-01 X 119760880 119760880 T A C1GALT1C1 Missense_Mutation p.N48Y 0.22 deleterious(0.01) possibly_damaging(0.694) TCGA-34-8454-01 X 123185069 123185069 G T STAG2 Missense_Mutation p.K372N 0.26 deleterious(0) probably_damaging(1) TCGA-34-8454-01 X 123185070 123185070 G T STAG2 Splice_Site p.X372_splice 0.27 TCGA-34-8454-01 X 124030091 124030091 C G TENM1 Splice_Site p.X73_splice 0.22 TCGA-34-8454-01 X 128976009 128976009 C G ZDHHC9 5'UTR 0.17 TCGA-34-8454-01 X 129059951 129059951 T C UTP14A Silent p.D602D 0.26 TCGA-34-8454-01 X 129184709 129184709 C G BCORL1 Missense_Mutation p.Q1546E 0.26 benign(0.059) TCGA-34-8454-01 X 129545364 129545364 C G RBMX2 Missense_Mutation p.R116G 0.16 deleterious(0) possibly_damaging(0.666) TCGA-34-8454-01 X 132160964 132160964 C A USP26 Missense_Mutation p.G429W 0.19 deleterious(0.03) probably_damaging(0.932) TCGA-34-8454-01 X 132439890 132439890 G A GPC4 Silent p.S355S 0.20 TCGA-34-8454-01 X 133941625 133941625 G T FAM122C 5'UTR 0.21 TCGA-34-8454-01 X 134305159 134305159 G T CT55 5'UTR 0.27 TCGA-34-8454-01 X 135405430 135405430 G T GPR112 Missense_Mutation p.W188C 0.18 deleterious(0.02) probably_damaging(1) TCGA-34-8454-01 X 135432329 135432329 C T GPR112 Missense_Mutation p.S2155L 0.20 tolerated(0.06) benign(0.002) TCGA-34-8454-01 X 135750118 135750118 G C ARHGEF6 3'UTR 0.19 TCGA-34-8454-01 X 1471109 1471109 T C IL3RA Missense_Mutation p.Y139H 0.33 tolerated(0.15) benign(0.183) TCGA-34-8454-01 X 148690402 148690402 C A TMEM185A Missense_Mutation p.W112L 0.19 deleterious(0) probably_damaging(0.975) TCGA-34-8454-01 X 149100806 149100806 C A CXorf40B Missense_Mutation p.V145L 0.10 deleterious(0) probably_damaging(0.99) TCGA-34-8454-01 X 149638921 149638921 C T MAMLD1 Missense_Mutation p.P334L 0.22 deleterious(0) possibly_damaging(0.872) TCGA-34-8454-01 X 152139042 152139042 G C ZNF185 Missense_Mutation p.R708P 0.16 deleterious(0) probably_damaging(0.956) TCGA-34-8454-01 X 153278802 153278802 G T IRAK1 Missense_Mutation p.S541Y 0.14 deleterious(0.01) possibly_damaging(0.781) TCGA-34-8454-01 X 153296515 153296515 C T MECP2 Missense_Mutation p.R267Q 0.23 deleterious(0) probably_damaging(0.996) TCGA-34-8454-01 X 153588151 153588151 G A FLNA Nonsense_Mutation p.Q1310* 0.20 TCGA-34-8454-01 X 154065795 154065795 G T F8 3'UTR 0.40 TCGA-34-8454-01 X 154158044 154158044 G C F8 Missense_Mutation p.L1341V 0.21 tolerated(0.12) benign(0.002) TCGA-34-8454-01 X 154225274 154225274 C G F8 Missense_Mutation p.G121A 0.20 deleterious(0.01) probably_damaging(1) TCGA-34-8454-01 X 41530695 41530695 C G CASK Missense_Mutation p.G173A 0.24 tolerated(0.45) benign(0.008) TCGA-34-8454-01 X 41782180 41782180 C G CASK Intron 0.18 TCGA-34-8454-01 X 50051859 50051859 C A CCNB3 Silent p.S230S 0.21 TCGA-34-8454-01 X 53279729 53279729 C T IQSEC2 Missense_Mutation p.G677R 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-34-8454-01 X 53459234 53459234 G C HSD17B10 Silent p.G106G 0.16 TCGA-34-8454-01 X 54475698 54475698 C A FGD1 Missense_Mutation p.V718L 0.28 tolerated(0.24) benign(0.038) TCGA-34-8454-01 X 54784166 54784166 G C ITIH6 Missense_Mutation p.P781A 0.19 tolerated(0.24) benign(0.142) TCGA-34-8454-01 X 54953034 54953034 T A TRO Missense_Mutation p.L559Q 0.21 deleterious(0.01) unknown(0) TCGA-34-8454-01 X 55783700 55783700 T C RRAGB Silent p.A321A 0.14 TCGA-34-8454-01 X 57934819 57934819 G T ZXDA Missense_Mutation p.T679K 0.14 deleterious(0) benign(0.209) TCGA-34-8454-01 X 65252560 65252560 G A VSIG4 Silent p.G148G 0.29 TCGA-34-8454-01 X 69504173 69504173 G A RAB41 Missense_Mutation p.E202K 0.20 deleterious(0.04) benign(0.039) TCGA-34-8454-01 X 69615599 69615599 A G KIF4A Missense_Mutation p.R771G 0.17 deleterious(0) probably_damaging(0.999) TCGA-34-8454-01 X 73960618 73960618 C A KIAA2022 Missense_Mutation p.L1258F 0.27 deleterious(0.01) possibly_damaging(0.888) TCGA-34-8454-01 X 79999671 79999671 T C BRWD3 Missense_Mutation p.I225V 0.25 deleterious(0.04) possibly_damaging(0.783) TCGA-34-8454-01 X 84622720 84622720 G T POF1B Missense_Mutation p.H112N 0.19 deleterious_low_confidence(0.02) benign(0.156) TCGA-34-8454-01 X 90691383 90691383 C G PABPC5 Silent p.L269L 0.24 TCGA-34-8454-01 X 91132697 91132697 G T PCDH11X Silent p.T486T 0.23 TCGA-34-8454-01 X 92964723 92964723 G T FAM133A Missense_Mutation p.C102F 0.22 tolerated_low_confidence(0.35) unknown(0) TCGA-34-8454-01 X 99657527 99657527 G T PCDH19 Missense_Mutation p.P871T 0.18 tolerated(0.37) benign(0.179) TCGA-34-8455-01 10 101841398 101841398 C T CPN1 5'UTR 0.15 TCGA-34-8455-01 10 107012594 107012594 C G SORCS3 Missense_Mutation p.A1056G 0.06 deleterious(0) probably_damaging(0.991) TCGA-34-8455-01 10 116930946 116930946 C A ATRNL1 Nonsense_Mutation p.S415* 0.44 TCGA-34-8455-01 10 118396379 118396379 G A PNLIPRP2 Silent p.V340V 0.36 TCGA-34-8455-01 10 118396380 118396380 G T PNLIPRP2 Nonsense_Mutation p.E341* 0.36 TCGA-34-8455-01 10 17083112 17083112 T A CUBN Missense_Mutation p.T1313S 0.39 tolerated(0.29) probably_damaging(0.911) TCGA-34-8455-01 10 31138272 31138272 C A ZNF438 Missense_Mutation p.Q354H 0.35 deleterious(0.03) benign(0.014) TCGA-34-8455-01 10 32306106 32306106 T C KIF5B Missense_Mutation p.K909R 0.20 tolerated(0.46) benign(0.006) TCGA-34-8455-01 10 37508429 37508429 A G ANKRD30A Silent p.L1207L 0.09 TCGA-34-8455-01 10 43650739 43650739 G T CSGALNACT2 Missense_Mutation p.V48F 0.29 tolerated(0.06) benign(0.054) TCGA-34-8455-01 10 50863258 50863258 G T CHAT Silent p.V584V 0.33 TCGA-34-8455-01 10 51814455 51814455 C T RP11-324H6.5 RNA 0.25 TCGA-34-8455-01 10 54528155 54528155 G - MBL2 Frame_Shift_Del p.T164Pfs*35 0.13 TCGA-34-8455-01 10 55568464 55568464 G T PCDH15 Missense_Mutation p.N716K 0.38 deleterious_low_confidence(0) unknown(0) TCGA-34-8455-01 10 55912946 55912946 G T PCDH15 Silent p.T566T 0.20 TCGA-34-8455-01 10 55912947 55912947 G T PCDH15 Missense_Mutation p.T566N 0.20 deleterious(0.03) probably_damaging(0.911) TCGA-34-8455-01 10 55973722 55973722 G T PCDH15 Missense_Mutation p.H358N 0.25 tolerated(0.22) benign(0.238) TCGA-34-8455-01 10 70406254 70406254 G T TET1 Missense_Mutation p.K1256N 0.12 tolerated(0.05) benign(0.132) TCGA-34-8455-01 10 7798019 7798019 T A KIN 3'UTR 0.29 TCGA-34-8455-01 10 97779433 97779433 C T CC2D2B Intron 0.18 TCGA-34-8455-01 10 98146803 98146803 C T TLL2 Missense_Mutation p.G587R 0.35 deleterious(0.05) possibly_damaging(0.778) TCGA-34-8455-01 11 100169963 100169963 C A CNTN5 Missense_Mutation p.R819S 0.34 tolerated(0.64) probably_damaging(1) TCGA-34-8455-01 11 113860329 113860329 A G HTR3A Silent p.Q465Q 0.38 TCGA-34-8455-01 11 117299052 117299052 G T DSCAML1 Missense_Mutation p.L2112M 0.14 deleterious_low_confidence(0) possibly_damaging(0.82) TCGA-34-8455-01 11 118981303 118981303 G A C2CD2L Silent p.V161V 0.10 TCGA-34-8455-01 11 121060482 121060482 G T TECTA Missense_Mutation p.W2087L 0.14 deleterious_low_confidence(0) possibly_damaging(0.906) TCGA-34-8455-01 11 123484183 123484183 G A GRAMD1B Missense_Mutation p.E539K 0.26 deleterious(0.01) possibly_damaging(0.556) TCGA-34-8455-01 11 123484184 123484184 A T GRAMD1B Missense_Mutation p.E539V 0.25 deleterious(0) possibly_damaging(0.848) TCGA-34-8455-01 11 124135713 124135713 G T OR8G5 Missense_Mutation p.D331Y 0.23 deleterious(0) probably_damaging(0.992) TCGA-34-8455-01 11 124252872 124252872 T G OR8B2 Missense_Mutation p.Y123S 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-34-8455-01 11 124412947 124412947 C A OR8B12 Missense_Mutation p.V202L 0.38 deleterious_low_confidence(0.02) possibly_damaging(0.816) TCGA-34-8455-01 11 124413440 124413440 G A OR8B12 Silent p.T37T 0.21 TCGA-34-8455-01 11 124543630 124543630 A G SIAE 5'UTR 0.24 TCGA-34-8455-01 11 124756480 124756480 G T ROBO4 Missense_Mutation p.L892I 0.22 tolerated(0.09) benign(0.364) TCGA-34-8455-01 11 134253661 134253661 G T B3GAT1 Silent p.R178R 0.38 TCGA-34-8455-01 11 14810786 14810786 A T PDE3B Silent p.S471S 0.30 TCGA-34-8455-01 11 17126715 17126715 C A PIK3C2A Splice_Site p.X1227_splice 0.24 TCGA-34-8455-01 11 21594951 21594951 G T NELL1 Missense_Mutation p.C793F 0.17 deleterious(0) probably_damaging(0.999) TCGA-34-8455-01 11 26484637 26484637 G C ANO3 Missense_Mutation p.R125P 0.45 tolerated(0.17) benign(0.154) TCGA-34-8455-01 11 26586947 26586947 C A MUC15 Missense_Mutation p.L180F 0.17 tolerated_low_confidence(0.12) probably_damaging(0.934) TCGA-34-8455-01 11 30925172 30925172 G C DCDC1 Missense_Mutation p.T1456S 0.14 deleterious(0.01) possibly_damaging(0.486) TCGA-34-8455-01 11 34904213 34904213 T C APIP 3'UTR 0.42 TCGA-34-8455-01 11 36596319 36596319 A T RAG1 Missense_Mutation p.R489W 0.34 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-34-8455-01 11 46564892 46564892 C A AMBRA1 Missense_Mutation p.Q225H 0.50 tolerated_low_confidence(0.08) probably_damaging(0.995) TCGA-34-8455-01 11 47303241 47303241 C T MADD Missense_Mutation p.P469L 0.12 tolerated(0.06) benign(0.095) TCGA-34-8455-01 11 48510985 48510989 TCTCT - OR4A47 Frame_Shift_Del p.S215Wfs*11 0.19 TCGA-34-8455-01 11 4976603 4976603 G T OR51A2 Missense_Mutation p.S114Y 0.41 deleterious(0.01) possibly_damaging(0.744) TCGA-34-8455-01 11 51515758 51515758 C G OR4C46 Silent p.L159L 0.37 TCGA-34-8455-01 11 55587793 55587793 C A OR5D18 Missense_Mutation p.R230S 0.17 tolerated(0.31) benign(0.039) TCGA-34-8455-01 11 55873173 55873173 G T OR8H2 Missense_Mutation p.V219L 0.39 tolerated(0.75) benign(0.012) TCGA-34-8455-01 11 5625828 5625828 C T TRIM6 Missense_Mutation p.A191V 0.31 tolerated(0.12) benign(0.069) TCGA-34-8455-01 11 58125942 58125942 A G OR5B17 Missense_Mutation p.S201P 0.15 deleterious_low_confidence(0.01) probably_damaging(0.957) TCGA-34-8455-01 11 58170597 58170597 C A OR5B3 Missense_Mutation p.A96S 0.36 deleterious_low_confidence(0) possibly_damaging(0.839) TCGA-34-8455-01 11 58601856 58601856 T C GLYATL2 3'UTR 0.19 TCGA-34-8455-01 11 59132156 59132156 C G OR5AN1 Missense_Mutation p.I75M 0.40 tolerated(0.06) benign(0.418) TCGA-34-8455-01 11 60274237 60274237 T A MS4A12 Missense_Mutation p.F209I 0.40 tolerated(0.06) probably_damaging(0.913) TCGA-34-8455-01 11 6048665 6048665 G T OR56A1 Silent p.A90A 0.30 TCGA-34-8455-01 11 64360960 64360960 C A SLC22A12 Missense_Mutation p.P197H 0.12 deleterious(0.03) probably_damaging(0.909) TCGA-34-8455-01 11 64368272 64368272 G T SLC22A12 Missense_Mutation p.R487L 0.30 tolerated(0.07) benign(0.04) TCGA-34-8455-01 11 64514261 64514261 C T PYGM Missense_Mutation p.R800Q 0.24 tolerated(0.08) benign(0.013) TCGA-34-8455-01 11 6541049 6541049 G A DNHD1 Missense_Mutation p.E538K 0.15 benign(0.008) TCGA-34-8455-01 11 6653633 6653633 G T DCHS1 Missense_Mutation p.A1037E 0.16 tolerated(0.56) benign(0.099) TCGA-34-8455-01 11 66633711 66633711 C A PC Missense_Mutation p.V378F 0.19 deleterious(0) possibly_damaging(0.892) TCGA-34-8455-01 11 67072242 67072242 A G SSH3 Splice_Site p.X35_splice 0.28 TCGA-34-8455-01 11 76814257 76814257 G T OMP Missense_Mutation p.E124D 0.23 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-34-8455-01 11 89891319 89891319 C A NAALAD2 Missense_Mutation p.T268N 0.17 deleterious(0) benign(0.333) TCGA-34-8455-01 11 92569869 92569869 G T FAT3 Silent p.R3408R 0.17 TCGA-34-8455-01 11 92599936 92599936 G T FAT3 Silent p.L3896L 0.11 TCGA-34-8455-01 11 92599937 92599937 G T FAT3 Missense_Mutation p.D3897Y 0.11 probably_damaging(0.992) TCGA-34-8455-01 11 93754682 93754682 G C HEPHL1 Missense_Mutation p.G50R 0.22 deleterious(0.02) probably_damaging(0.935) TCGA-34-8455-01 11 9549256 9549256 C T ZNF143 3'UTR 0.25 TCGA-34-8455-01 11 96074985 96074985 C A MAML2 Silent p.G25G 0.40 TCGA-34-8455-01 12 101490353 101490353 C A ANO4 Missense_Mutation p.T558N 0.22 deleterious(0.01) benign(0.007) TCGA-34-8455-01 12 104390607 104390607 T C GLT8D2 Missense_Mutation p.Y169C 0.30 deleterious(0.01) probably_damaging(0.94) TCGA-34-8455-01 12 109016969 109016969 C A SELPLG Missense_Mutation p.G388V 0.38 deleterious(0) probably_damaging(0.994) TCGA-34-8455-01 12 117672484 117672484 A T NOS1 Missense_Mutation p.F1075I 0.24 deleterious(0.01) probably_damaging(0.928) TCGA-34-8455-01 12 120204905 120204905 C A CIT Nonsense_Mutation p.E764* 0.28 TCGA-34-8455-01 12 122734570 122734570 C T VPS33A Missense_Mutation p.R208K 0.21 tolerated(0.21) benign(0.21) TCGA-34-8455-01 12 125509742 125509742 G T BRI3BP Silent p.L174L 0.21 TCGA-34-8455-01 12 125834678 125834678 G T TMEM132B Missense_Mutation p.G245C 0.23 deleterious(0) probably_damaging(0.922) TCGA-34-8455-01 12 132250837 132250837 G T SFSWAP Missense_Mutation p.S709I 0.31 deleterious(0.02) benign(0.164) TCGA-34-8455-01 12 13716367 13716367 G T GRIN2B Missense_Mutation p.P1269T 0.29 tolerated(0.12) benign(0.096) TCGA-34-8455-01 12 15656864 15656864 G - PTPRO Frame_Shift_Del p.V377Wfs*12 0.20 TCGA-34-8455-01 12 21030854 21030854 T G SLCO1B3 Missense_Mutation p.H373Q 0.14 tolerated(0.42) benign(0) TCGA-34-8455-01 12 24736498 24736498 C G LINC00477 RNA 0.27 TCGA-34-8455-01 12 313782 313782 G C SLC6A12 Nonsense_Mutation p.Y99* 0.32 TCGA-34-8455-01 12 40076886 40076886 A T C12orf40 Missense_Mutation p.N387I 0.32 deleterious(0.04) possibly_damaging(0.889) TCGA-34-8455-01 12 40696640 40696640 G C LRRK2 Missense_Mutation p.Q1182H 0.31 tolerated(0.49) benign(0.02) TCGA-34-8455-01 12 41418968 41418968 C T CNTN1 Missense_Mutation p.A847V 0.35 tolerated(0.29) benign(0) TCGA-34-8455-01 12 45170835 45170835 G T NELL2 Missense_Mutation p.T301K 0.25 deleterious(0.02) possibly_damaging(0.827) TCGA-34-8455-01 12 4543411 4543411 C A FGF6 Missense_Mutation p.M199I 0.30 tolerated(0.09) possibly_damaging(0.84) TCGA-34-8455-01 12 46244924 46244924 G A ARID2 Missense_Mutation p.M1006I 0.29 tolerated_low_confidence(0.06) possibly_damaging(0.615) TCGA-34-8455-01 12 53232985 53232985 G C KRT78 Missense_Mutation p.S492C 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-34-8455-01 12 56031001 56031001 G T OR10P1 Missense_Mutation p.G109V 0.34 deleterious(0) possibly_damaging(0.882) TCGA-34-8455-01 12 64178853 64178853 G T TMEM5 Splice_Site p.X143_splice 0.19 TCGA-34-8455-01 12 65720708 65720708 C - MSRB3 Frame_Shift_Del p.E68Kfs*45 0.24 TCGA-34-8455-01 12 6635285 6635285 G A NCAPD2 Silent p.G800G 0.25 TCGA-34-8455-01 12 6960122 6960122 C A CDCA3 5'UTR 0.32 TCGA-34-8455-01 12 6960123 6960123 C A CDCA3 5'UTR 0.36 TCGA-34-8455-01 12 70980933 70980933 C A PTPRB Missense_Mutation p.R722I 0.35 tolerated(0.09) benign(0.271) TCGA-34-8455-01 12 78388652 78388652 G T NAV3 Splice_Site p.X247_splice 0.21 TCGA-34-8455-01 12 78604221 78604221 G A NAV3 Missense_Mutation p.S2339N 0.19 deleterious(0) benign(0.371) TCGA-34-8455-01 12 7966966 7966966 G T SLC2A14 Silent p.G503G 0.34 TCGA-34-8455-01 12 8234841 8234841 C T NECAP1 5'UTR 0.30 TCGA-34-8455-01 12 85492654 85492654 T C LRRIQ1 Silent p.L1031L 0.28 TCGA-34-8455-01 12 86199478 86199478 C A RASSF9 Nonsense_Mutation p.G104* 0.26 TCGA-34-8455-01 12 9317733 9317733 A C PZP Splice_Site p.X829_splice 0.31 TCGA-34-8455-01 12 93793167 93793167 T A NUDT4 3'UTR 0.05 TCGA-34-8455-01 12 99109286 99109286 G A APAF1 Missense_Mutation p.D1014N 0.27 tolerated(0.09) benign(0.109) TCGA-34-8455-01 13 110822111 110822111 T G COL4A1 Splice_Site p.X1248_splice 0.33 TCGA-34-8455-01 13 111117779 111117779 G C COL4A2 Missense_Mutation p.D602H 0.22 probably_damaging(0.94) TCGA-34-8455-01 13 111158803 111158803 C A COL4A2 Missense_Mutation p.P1482T 0.44 unknown(0) TCGA-34-8455-01 13 19753631 19753631 G T TUBA3C Missense_Mutation p.L26M 0.49 deleterious_low_confidence(0) probably_damaging(0.912) TCGA-34-8455-01 13 19753632 19753632 G T TUBA3C Nonsense_Mutation p.C25* 0.48 TCGA-34-8455-01 13 41946341 41946341 A G NAA16 Silent p.V650V 0.52 TCGA-34-8455-01 13 58299255 58299255 G T PCDH17 Missense_Mutation p.V1103L 0.28 tolerated_low_confidence(0.09) benign(0.023) TCGA-34-8455-01 13 79176020 79176020 C A POU4F1 Missense_Mutation p.D264Y 0.19 deleterious(0) unknown(0) TCGA-34-8455-01 13 84454819 84454819 G T SLITRK1 Missense_Mutation p.P275H 0.32 deleterious(0.03) possibly_damaging(0.742) TCGA-34-8455-01 14 103410463 103410463 A T CDC42BPB Silent p.P1391P 0.31 TCGA-34-8455-01 14 106791192 106791192 C A IGHV3-30 Missense_Mutation p.W55L 0.11 deleterious_low_confidence(0) benign(0.397) TCGA-34-8455-01 14 107083322 107083322 C T IGHV4-59 Silent p.K94K 0.27 TCGA-34-8455-01 14 107113835 107113835 C A IGHV3-64 Missense_Mutation p.R87I 0.20 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-34-8455-01 14 20215922 20215922 G C OR4Q3 Missense_Mutation p.E112D 0.13 deleterious(0.01) probably_damaging(0.984) TCGA-34-8455-01 14 20249216 20249216 C A OR4M1 Missense_Mutation p.H245Q 0.11 deleterious(0.01) possibly_damaging(0.817) TCGA-34-8455-01 14 20389206 20389206 C A OR4K5 Silent p.I147I 0.10 TCGA-34-8455-01 14 20502656 20502656 C T OR4K13 Missense_Mutation p.E88K 0.29 tolerated(0.26) benign(0.002) TCGA-34-8455-01 14 23587862 23587862 G T CEBPE Missense_Mutation p.H147N 0.29 deleterious(0.01) probably_damaging(0.932) TCGA-34-8455-01 14 23608689 23608689 C A SLC7A8 Missense_Mutation p.A286S 0.23 deleterious(0.02) probably_damaging(1) TCGA-34-8455-01 14 31348104 31348104 C A COCH Silent p.I109I 0.34 TCGA-34-8455-01 14 31642534 31642535 - AA HECTD1 Frame_Shift_Ins p.L328Ffs*29 0.25 TCGA-34-8455-01 14 39534185 39534185 T A SEC23A Missense_Mutation p.I414L 0.34 tolerated(1) benign(0.002) TCGA-34-8455-01 14 70883625 70883625 C A SYNJ2BP Missense_Mutation p.G19V 0.31 deleterious(0.02) probably_damaging(0.992) TCGA-34-8455-01 14 70883626 70883626 C A SYNJ2BP Missense_Mutation p.G19W 0.32 deleterious(0) probably_damaging(0.998) TCGA-34-8455-01 14 73238530 73238530 C A DPF3 Missense_Mutation p.R35L 0.21 deleterious(0) possibly_damaging(0.858) TCGA-34-8455-01 14 94577985 94577985 G A IFI27 Intron 0.35 TCGA-34-8455-01 15 101562064 101562064 G T LRRK1 Missense_Mutation p.R585L 0.31 deleterious(0.01) possibly_damaging(0.547) TCGA-34-8455-01 15 25227131 25227131 G T SNRPN 3'Flank 0.27 TCGA-34-8455-01 15 25335122 25335122 G T SNHG14 Intron 0.28 TCGA-34-8455-01 15 31197739 31197739 A T FAN1 Missense_Mutation p.E291D 0.30 tolerated(0.62) benign(0) TCGA-34-8455-01 15 33872300 33872300 C A RYR3 Missense_Mutation p.N464K 0.27 benign(0.079) TCGA-34-8455-01 15 34080660 34080660 G T RYR3 Splice_Site p.X3277_splice 0.25 TCGA-34-8455-01 15 35087010 35087010 C A ACTC1 5'UTR 0.30 TCGA-34-8455-01 15 43571460 43571478 AGCGGCCACTGTGTCTCTA - TGM7 Splice_Site p.X560_splice 0.24 TCGA-34-8455-01 15 45047475 45047475 A T TRIM69 Silent p.P128P 0.31 TCGA-34-8455-01 15 59499844 59499844 T C LDHAL6B Silent p.H235H 0.32 TCGA-34-8455-01 15 62950042 62950042 G T TLN2 Missense_Mutation p.A245S 0.31 deleterious(0.03) benign(0.009) TCGA-34-8455-01 15 69325521 69325521 C A NOX5 Missense_Mutation p.F253L 0.46 tolerated(0.05) benign(0.199) TCGA-34-8455-01 15 69327728 69327728 G - NOX5 Frame_Shift_Del p.A298Pfs*24 0.22 TCGA-34-8455-01 15 75974757 75974757 G T CSPG4 Silent p.S1609S 0.24 TCGA-34-8455-01 15 75974758 75974758 G T CSPG4 Missense_Mutation p.S1609Y 0.24 deleterious(0) probably_damaging(0.971) TCGA-34-8455-01 15 91503599 91503599 G T RCCD1 Missense_Mutation p.G274C 0.29 deleterious(0.01) benign(0.125) TCGA-34-8455-01 15 99696235 99696235 C A TTC23 Intron 0.40 TCGA-34-8455-01 16 24104117 24104117 G A PRKCB Missense_Mutation p.D179N 0.24 tolerated(0.11) benign(0.009) TCGA-34-8455-01 16 27784450 27784450 G T KIAA0556 Missense_Mutation p.W1410L 0.17 deleterious(0) probably_damaging(0.996) TCGA-34-8455-01 16 31342537 31342537 G T ITGAM Missense_Mutation p.V1111L 0.17 tolerated(0.1) possibly_damaging(0.88) TCGA-34-8455-01 16 3140485 3140485 G C ZSCAN10 Missense_Mutation p.P262R 0.52 tolerated(0.35) benign(0.081) TCGA-34-8455-01 16 46708281 46708281 C G VPS35 Missense_Mutation p.V369L 0.34 deleterious(0.01) possibly_damaging(0.612) TCGA-34-8455-01 16 4700392 4700392 A T MGRN1 Missense_Mutation p.M39L 0.40 tolerated(0.05) possibly_damaging(0.631) TCGA-34-8455-01 16 49823420 49823420 C G ZNF423 Missense_Mutation p.W18C 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.527) TCGA-34-8455-01 16 55734155 55734155 C G SLC6A2 Silent p.S565S 0.32 TCGA-34-8455-01 16 56936294 56936295 - T SLC12A3 Frame_Shift_Ins p.E921* 0.31 TCGA-34-8455-01 16 71098736 71098736 C A HYDIN Missense_Mutation p.V695L 0.31 probably_damaging(0.922) TCGA-34-8455-01 16 83520241 83520241 C A CDH13 Missense_Mutation p.P361H 0.42 deleterious(0) probably_damaging(0.979) TCGA-34-8455-01 16 85813998 85813998 T G EMC8 Silent p.R154R 0.55 TCGA-34-8455-01 16 9012950 9012950 C A USP7 Nonsense_Mutation p.G220* 0.45 TCGA-34-8455-01 17 15234536 15234536 C A TEKT3 Missense_Mutation p.D123Y 0.41 deleterious(0) probably_damaging(0.981) TCGA-34-8455-01 17 15234537 15234537 C A TEKT3 Silent p.V122V 0.41 TCGA-34-8455-01 17 16012199 16012199 C A NCOR1 Missense_Mutation p.D695Y 0.44 probably_damaging(0.923) TCGA-34-8455-01 17 1945113 1945113 A T DPH1 Missense_Mutation p.S432C 0.62 deleterious_low_confidence(0) benign(0.401) TCGA-34-8455-01 17 2239808 2239808 G T TSR1 5'UTR 0.42 TCGA-34-8455-01 17 293172 293172 C A FAM101B Missense_Mutation p.G73V 0.45 deleterious(0) benign(0.047) TCGA-34-8455-01 17 29533390 29533390 G T NF1 Splice_Site p.X464_splice 0.41 TCGA-34-8455-01 17 33520807 33520807 C A SLC35G3 Nonsense_Mutation p.G174* 0.47 TCGA-34-8455-01 17 33520808 33520808 C A SLC35G3 Silent p.V173V 0.47 TCGA-34-8455-01 17 34264912 34264912 G A LYZL6 Silent p.L50L 0.43 TCGA-34-8455-01 17 38933350 38933350 C A KRT27 Missense_Mutation p.E427D 0.69 deleterious(0.05) probably_damaging(0.992) TCGA-34-8455-01 17 39190637 39190637 G A KRTAP1-3 Missense_Mutation p.P146L 0.54 deleterious(0) possibly_damaging(0.851) TCGA-34-8455-01 17 42194953 42194953 C A HDAC5 5'UTR 0.64 TCGA-34-8455-01 17 42335473 42335473 C T SLC4A1 Missense_Mutation p.R388H 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-34-8455-01 17 45776824 45776824 A T TBKBP1 Missense_Mutation p.Q258L 0.50 deleterious(0) possibly_damaging(0.866) TCGA-34-8455-01 17 57287941 57287941 G T SMG8 Nonsense_Mutation p.G177* 0.67 TCGA-34-8455-01 17 67016609 67016609 C A ABCA9 Silent p.A840A 0.47 TCGA-34-8455-01 17 7097798 7097798 C A DLG4 Missense_Mutation p.D483Y 0.90 deleterious(0) probably_damaging(0.999) TCGA-34-8455-01 17 7577534 7577534 C G TP53 Missense_Mutation p.R249S 0.39 deleterious(0) probably_damaging(0.994) TCGA-34-8455-01 17 78444707 78444707 A T NPTX1 Missense_Mutation p.L402Q 0.21 tolerated(0.1) benign(0.183) TCGA-34-8455-01 17 9590133 9590133 G T USP43 Silent p.L420L 0.44 TCGA-34-8455-01 18 31803249 31803249 C A NOL4 5'UTR 0.27 TCGA-34-8455-01 18 31803250 31803250 C T NOL4 5'UTR 0.27 TCGA-34-8455-01 18 61322965 61322965 G T SERPINB3 Missense_Mutation p.H367N 0.46 deleterious(0) probably_damaging(0.995) TCGA-34-8455-01 18 66344222 66344222 A T TMX3 Missense_Mutation p.V438E 0.55 tolerated_low_confidence(1) benign(0.002) TCGA-34-8455-01 18 72589286 72589286 T C ZNF407 Missense_Mutation p.S1671P 0.51 deleterious(0) probably_damaging(0.996) TCGA-34-8455-01 18 76754334 76754334 C G SALL3 Silent p.S781S 0.36 TCGA-34-8455-01 19 11408889 11408889 C T TSPAN16 Silent p.L47L 0.16 TCGA-34-8455-01 19 11408890 11408890 G C TSPAN16 Missense_Mutation p.G48R 0.16 deleterious(0.04) probably_damaging(0.928) TCGA-34-8455-01 19 11408891 11408891 G T TSPAN16 Missense_Mutation p.G48V 0.15 deleterious(0) probably_damaging(0.996) TCGA-34-8455-01 19 12076015 12076015 A T ZNF763 5'UTR 0.34 TCGA-34-8455-01 19 16772124 16772124 C T TMEM38A Silent p.V32V 0.44 TCGA-34-8455-01 19 18981412 18981412 C T CERS1 Missense_Mutation p.G343S 0.29 deleterious(0.04) probably_damaging(0.993) TCGA-34-8455-01 19 19166730 19166730 G T ARMC6 Missense_Mutation p.G429V 0.28 deleterious(0) possibly_damaging(0.563) TCGA-34-8455-01 19 21990601 21990601 G C ZNF43 Silent p.S746S 0.38 TCGA-34-8455-01 19 2276351 2276351 T A C19orf35 Silent p.A250A 0.13 TCGA-34-8455-01 19 34263335 34263335 C A CHST8 Silent p.G214G 0.26 TCGA-34-8455-01 19 34263336 34263336 C G CHST8 Missense_Mutation p.L215V 0.26 tolerated(0.05) possibly_damaging(0.566) TCGA-34-8455-01 19 35506793 35506793 G T GRAMD1A Missense_Mutation p.G379C 0.18 deleterious(0) possibly_damaging(0.76) TCGA-34-8455-01 19 36277754 36277754 C T ARHGAP33 Intron 0.21 TCGA-34-8455-01 19 36279066 36279066 G T ARHGAP33 Missense_Mutation p.G1039V 0.35 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-34-8455-01 19 36611662 36611662 G T TBCB Silent p.R103R 0.05 TCGA-34-8455-01 19 38230411 38230411 T A ZNF573 Missense_Mutation p.K327I 0.13 deleterious(0.01) probably_damaging(0.962) TCGA-34-8455-01 19 39408377 39408377 C A SARS2 Missense_Mutation p.G385C 0.29 deleterious(0) probably_damaging(0.999) TCGA-34-8455-01 19 39408378 39408378 C A SARS2 Silent p.L384L 0.29 TCGA-34-8455-01 19 40318981 40318981 T A DYRK1B Missense_Mutation p.I255F 0.21 deleterious(0) probably_damaging(0.998) TCGA-34-8455-01 19 42599466 42599466 C A POU2F2 Missense_Mutation p.G368V 0.47 tolerated(0.61) probably_damaging(0.965) TCGA-34-8455-01 19 45315482 45315482 G T BCAM Missense_Mutation p.Q89H 0.44 tolerated(0.21) benign(0.007) TCGA-34-8455-01 19 45899643 45899643 A T PPP1R13L Missense_Mutation p.L255Q 0.37 deleterious(0) probably_damaging(0.959) TCGA-34-8455-01 19 49539030 49539030 A T CGB1 Missense_Mutation p.V102E 0.09 deleterious(0) probably_damaging(0.997) TCGA-34-8455-01 19 49813338 49813338 G A SLC6A16 Missense_Mutation p.P220L 0.35 deleterious(0) probably_damaging(1) TCGA-34-8455-01 19 51165232 51165232 A T SHANK1 Missense_Mutation p.L2159Q 0.20 unknown(0) TCGA-34-8455-01 19 51190296 51190296 G A SHANK1 Intron 0.27 TCGA-34-8455-01 19 51961387 51961387 G C SIGLEC8 Missense_Mutation p.D85E 0.39 tolerated(0.93) benign(0.007) TCGA-34-8455-01 19 52272070 52272070 C A FPR2 Missense_Mutation p.F53L 0.32 deleterious(0) probably_damaging(0.997) TCGA-34-8455-01 19 52658517 52658517 C A ZNF836 Missense_Mutation p.V807L 0.20 deleterious(0) benign(0.047) TCGA-34-8455-01 19 53015156 53015156 G T ZNF578 Nonsense_Mutation p.E508* 0.20 TCGA-34-8455-01 19 54544160 54544160 G A VSTM1 3'UTR 0.17 TCGA-34-8455-01 19 54849709 54849709 C A LILRA4 Missense_Mutation p.G105C 0.41 deleterious(0) probably_damaging(0.929) TCGA-34-8455-01 19 56515418 56515418 G T NLRP5 Missense_Mutation p.M133I 0.32 deleterious(0) probably_damaging(0.963) TCGA-34-8455-01 19 7809017 7809017 A C CD209 Missense_Mutation p.V330G 0.37 deleterious(0) possibly_damaging(0.865) TCGA-34-8455-01 19 8150365 8150365 C A FBN3 Missense_Mutation p.E2323D 0.33 tolerated(0.19) possibly_damaging(0.595) TCGA-34-8455-01 19 8586480 8586480 C T MYO1F Missense_Mutation p.G1077S 0.12 deleterious(0) possibly_damaging(0.856) TCGA-34-8455-01 19 9021078 9021078 G T MUC16 Silent p.T12415T 0.27 TCGA-34-8455-01 19 9058882 9058882 G C MUC16 Missense_Mutation p.H9522D 0.39 unknown(0) TCGA-34-8455-01 19 9068871 9068871 A T MUC16 Missense_Mutation p.V6192E 0.18 unknown(0) TCGA-34-8455-01 19 9213338 9213338 G T OR7G2 Silent p.I215I 0.31 TCGA-34-8455-01 1 109270439 109270439 G T FNDC7 Missense_Mutation p.C374F 0.29 deleterious(0) probably_damaging(0.999) TCGA-34-8455-01 1 12337072 12337072 A G VPS13D Missense_Mutation p.M1143V 0.46 benign(0.004) TCGA-34-8455-01 1 12639422 12639422 G A DHRS3 Silent p.L120L 0.22 TCGA-34-8455-01 1 152283819 152283820 - T FLG Frame_Shift_Ins p.H1181Qfs*2 0.28 TCGA-34-8455-01 1 152285493 152285493 C A FLG Missense_Mutation p.Q623H 0.25 probably_damaging(0.999) TCGA-34-8455-01 1 152286266 152286266 G T FLG Missense_Mutation p.R366S 0.29 benign(0.229) TCGA-34-8455-01 1 153122357 153122357 T C SPRR2G 3'UTR 0.26 TCGA-34-8455-01 1 153122385 153122385 A T SPRR2G Missense_Mutation p.Y68N 0.19 unknown(0) TCGA-34-8455-01 1 156235946 156235946 T C SMG5 Missense_Mutation p.D494G 0.34 tolerated(0.32) benign(0.012) TCGA-34-8455-01 1 156926311 156926311 C A ARHGEF11 Silent p.G524G 0.30 TCGA-34-8455-01 1 158226575 158226575 G C CD1A Splice_Site p.X202_splice 0.35 TCGA-34-8455-01 1 158450417 158450417 A T OR10R2 Silent p.S250S 0.29 TCGA-34-8455-01 1 159273924 159273924 C A FCER1A Missense_Mutation p.H95N 0.31 tolerated(1) benign(0) TCGA-34-8455-01 1 160105689 160105689 C A ATP1A2 Missense_Mutation p.P782H 0.25 deleterious(0) probably_damaging(0.998) TCGA-34-8455-01 1 160105690 160105690 C A ATP1A2 Silent p.P782P 0.24 TCGA-34-8455-01 1 160141079 160141079 C A ATP1A4 Missense_Mutation p.H510Q 0.26 tolerated(0.06) probably_damaging(0.993) TCGA-34-8455-01 1 162824503 162824503 C A C1orf110 3'UTR 0.23 TCGA-34-8455-01 1 167798528 167798528 G T ADCY10 Missense_Mutation p.L1243M 0.37 tolerated(0.21) benign(0.142) TCGA-34-8455-01 1 16902937 16902937 C G NBPF1 Silent p.L648L 0.09 TCGA-34-8455-01 1 175096131 175096131 G T TNN Silent p.T985T 0.24 TCGA-34-8455-01 1 175334304 175334304 G T TNR Missense_Mutation p.P810H 0.25 deleterious(0.02) probably_damaging(0.98) TCGA-34-8455-01 1 176998857 176998857 G C ASTN1 Missense_Mutation p.P345A 0.56 tolerated_low_confidence(0.24) probably_damaging(0.998) TCGA-34-8455-01 1 180145118 180145118 G T QSOX1 Missense_Mutation p.E155D 0.25 deleterious(0) possibly_damaging(0.452) TCGA-34-8455-01 1 182550474 182550474 C G RNASEL Silent p.R597R 0.29 TCGA-34-8455-01 1 182551340 182551340 C A RNASEL Missense_Mutation p.E540D 0.24 tolerated(0.1) benign(0.293) TCGA-34-8455-01 1 186277193 186277193 C T PRG4 Missense_Mutation p.T781I 0.25 unknown(0) TCGA-34-8455-01 1 18692110 18692110 C - IGSF21 Frame_Shift_Del p.Q312Rfs*36 0.21 TCGA-34-8455-01 1 196927038 196927038 G T CFHR2 Missense_Mutation p.G150W 0.27 deleterious(0) probably_damaging(0.925) TCGA-34-8455-01 1 196927039 196927039 G T CFHR2 Missense_Mutation p.G150V 0.27 deleterious(0) benign(0.055) TCGA-34-8455-01 1 197032014 197032014 C A F13B Missense_Mutation p.G80C 0.28 deleterious(0) probably_damaging(1) TCGA-34-8455-01 1 197390963 197390963 G T CRB1 Missense_Mutation p.G669C 0.31 deleterious(0) probably_damaging(1) TCGA-34-8455-01 1 200567394 200567394 T A KIF14 Missense_Mutation p.L840F 0.33 deleterious(0) probably_damaging(1) TCGA-34-8455-01 1 201193988 201193988 G A IGFN1 Missense_Mutation p.R3491H 0.33 benign(0.042) TCGA-34-8455-01 1 203134443 203134443 G T ADORA1 Missense_Mutation p.W132C 0.39 deleterious(0) probably_damaging(1) TCGA-34-8455-01 1 204199696 204199696 C G PLEKHA6 Missense_Mutation p.V810L 0.14 tolerated(0.05) benign(0.008) TCGA-34-8455-01 1 204588123 204588123 T A LRRN2 Missense_Mutation p.H333L 0.26 tolerated(0.26) benign(0.259) TCGA-34-8455-01 1 207273261 207273261 C A C4BPB Missense_Mutation p.A249E 0.30 tolerated(0.13) unknown(0) TCGA-34-8455-01 1 214576298 214576298 T A PTPN14 Splice_Site p.X171_splice 0.32 TCGA-34-8455-01 1 220088823 220088823 C A SLC30A10 Missense_Mutation p.D476Y 0.20 deleterious_low_confidence(0) possibly_damaging(0.867) TCGA-34-8455-01 1 221057921 221057921 A G HLX Missense_Mutation p.S448G 0.30 tolerated_low_confidence(0.82) benign(0) TCGA-34-8455-01 1 22188330 22188330 G A HSPG2 Silent p.S1625S 0.24 TCGA-34-8455-01 1 225685389 225685389 A C ENAH 3'UTR 0.25 TCGA-34-8455-01 1 236911005 236911005 G A ACTN2 Missense_Mutation p.R482Q 0.40 deleterious(0.02) benign(0.052) TCGA-34-8455-01 1 24105931 24105931 G T PITHD1 Missense_Mutation p.V68F 0.32 deleterious(0) probably_damaging(0.993) TCGA-34-8455-01 1 241797006 241797006 T C CHML 3'UTR 0.28 TCGA-34-8455-01 1 245530376 245530376 G T KIF26B Missense_Mutation p.V236L 0.31 tolerated(0.8) unknown(0) TCGA-34-8455-01 1 248005179 248005179 G T OR11L1 Missense_Mutation p.S7Y 0.21 deleterious(0) possibly_damaging(0.903) TCGA-34-8455-01 1 248201709 248201709 T G OR2L2 Missense_Mutation p.L47R 0.26 deleterious(0) probably_damaging(0.97) TCGA-34-8455-01 1 248403140 248403140 G T OR2M4 Missense_Mutation p.V304L 0.24 tolerated(0.61) benign(0.011) TCGA-34-8455-01 1 248458495 248458495 C A OR2T12 Missense_Mutation p.R129L 0.27 deleterious(0.01) possibly_damaging(0.877) TCGA-34-8455-01 1 248512155 248512155 G T OR14C36 Missense_Mutation p.A27S 0.27 deleterious(0.02) benign(0.041) TCGA-34-8455-01 1 248525359 248525359 C - OR2T4 Frame_Shift_Del p.H160Ifs*9 0.13 TCGA-34-8455-01 1 248722766 248722766 G C OR2T29 Missense_Mutation p.N9K 0.12 deleterious(0.04) benign(0.049) TCGA-34-8455-01 1 248789717 248789717 C G OR2T11 Missense_Mutation p.C238S 0.27 deleterious(0) probably_damaging(0.998) TCGA-34-8455-01 1 248814053 248814053 T C OR2T27 Missense_Mutation p.K45E 0.13 deleterious(0) benign(0.001) TCGA-34-8455-01 1 26888048 26888048 G A RPS6KA1 Missense_Mutation p.G504E 0.31 deleterious(0.03) possibly_damaging(0.745) TCGA-34-8455-01 1 27190144 27190144 C T SFN Silent p.A147A 0.27 TCGA-34-8455-01 1 28282788 28282788 G A SMPDL3B Intron 0.39 TCGA-34-8455-01 1 28527581 28527581 C A DNAJC8 3'UTR 0.30 TCGA-34-8455-01 1 31409487 31409487 T A PUM1 Intron 0.35 TCGA-34-8455-01 1 32207454 32207454 G A BAI2 Missense_Mutation p.P511L 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-34-8455-01 1 34208997 34208997 C T CSMD2 Missense_Mutation p.G646D 0.29 deleterious(0) probably_damaging(0.999) TCGA-34-8455-01 1 39550028 39550028 C T MACF1 Silent p.N46N 0.38 TCGA-34-8455-01 1 46978130 46978130 C A DMBX1 Missense_Mutation p.H366Q 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-34-8455-01 1 53444008 53444008 G C SCP2 Missense_Mutation p.S265T 0.27 deleterious(0.02) benign(0.008) TCGA-34-8455-01 1 54607036 54607036 C A CDCP2 Silent p.P166P 0.18 TCGA-34-8455-01 1 74715181 74715181 G T FPGT-TNNI3K Missense_Mutation p.R177L 0.19 tolerated(0.1) benign(0.135) TCGA-34-8455-01 1 76363685 76363685 G T MSH4 Missense_Mutation p.V817L 0.37 tolerated(0.14) benign(0.029) TCGA-34-8455-01 1 7798298 7798298 C T CAMTA1 Missense_Mutation p.S1313F 0.42 deleterious_low_confidence(0.02) possibly_damaging(0.653) TCGA-34-8455-01 1 874711 874711 C G SAMD11 Missense_Mutation p.R193G 0.46 deleterious(0) probably_damaging(0.932) TCGA-34-8455-01 20 11898848 11898848 G T BTBD3 5'UTR 0.24 TCGA-34-8455-01 20 126121 126121 G T DEFB126 Nonsense_Mutation p.E42* 0.32 TCGA-34-8455-01 20 18794737 18794737 G T SCP2D1 Missense_Mutation p.G93V 0.32 deleterious(0) probably_damaging(0.992) TCGA-34-8455-01 20 21493077 21493077 C A NKX2-2 Missense_Mutation p.K102N 0.24 tolerated(0.19) benign(0.016) TCGA-34-8455-01 20 2375147 2375147 C A TGM6 Silent p.A19A 0.21 TCGA-34-8455-01 20 31598891 31598891 G A BPIFB2 Silent p.L57L 0.17 TCGA-34-8455-01 20 31598892 31598892 G T BPIFB2 Missense_Mutation p.D58Y 0.16 tolerated(0.06) possibly_damaging(0.544) TCGA-34-8455-01 20 334123 334123 C T NRSN2 Silent p.P153P 0.30 TCGA-34-8455-01 20 3686454 3686454 G C SIGLEC1 Missense_Mutation p.L215V 0.20 deleterious(0) probably_damaging(1) TCGA-34-8455-01 20 3686455 3686455 G T SIGLEC1 Silent p.I214I 0.21 TCGA-34-8455-01 20 37209964 37209964 C T ADIG Missense_Mutation p.P24L 0.25 deleterious(0) probably_damaging(0.998) TCGA-34-8455-01 20 43726408 43726408 G T KCNS1 Silent p.G335G 0.41 TCGA-34-8455-01 20 43961711 43961711 T C SDC4 Splice_Site p.X67_splice 0.25 TCGA-34-8455-01 20 45867443 45867443 C A ZMYND8 Intron 0.42 TCGA-34-8455-01 20 50139685 50139685 T C NFATC2 Silent p.P365P 0.30 TCGA-34-8455-01 20 56730532 56730532 G T C20orf85 Missense_Mutation p.K53N 0.28 tolerated(0.11) benign(0.165) TCGA-34-8455-01 20 57829561 57829561 G T ZNF831 Silent p.G1599G 0.42 TCGA-34-8455-01 20 61340692 61340692 C A NTSR1 Missense_Mutation p.R45S 0.33 tolerated(0.89) benign(0.001) TCGA-34-8455-01 20 61952406 61952406 C A COL20A1 Silent p.S1065S 0.30 TCGA-34-8455-01 21 11058292 11058292 G T BAGE2 RNA 0.03 TCGA-34-8455-01 21 32127480 32127480 T A KRTAP21-1 Nonsense_Mutation p.R73* 0.44 TCGA-34-8455-01 21 43176966 43176966 C A RIPK4 Nonsense_Mutation p.E65* 0.54 TCGA-34-8455-01 21 45817642 45817642 A T TRPM2 Missense_Mutation p.I649F 0.44 deleterious(0.02) possibly_damaging(0.646) TCGA-34-8455-01 22 17690425 17690425 C A CECR1 Missense_Mutation p.G48V 0.52 deleterious(0) probably_damaging(0.971) TCGA-34-8455-01 22 22892437 22892437 C A PRAME Missense_Mutation p.D222Y 0.47 deleterious(0.04) benign(0.007) TCGA-34-8455-01 22 30977567 30977567 C A PES1 Missense_Mutation p.G232V 0.19 deleterious(0) probably_damaging(0.999) TCGA-34-8455-01 22 35948129 35948129 C G RASD2 3'UTR 0.53 TCGA-34-8455-01 22 36691756 36691756 C G MYH9 Missense_Mutation p.E1094Q 0.15 possibly_damaging(0.71) TCGA-34-8455-01 22 38369770 38369770 A G SOX10 Missense_Mutation p.I378T 0.52 tolerated(0.36) benign(0.01) TCGA-34-8455-01 22 43634737 43634768 CACGTGGCCCCCGTTCAGCCCAGCCCTGGGCC - SCUBE1 Intron 0.60 TCGA-34-8455-01 22 45258300 45258300 A G PRR5-ARHGAP8 Missense_Mutation p.Y586C 0.14 tolerated_low_confidence(0.1) benign(0.129) TCGA-34-8455-01 2 119729104 119729104 G T MARCO Missense_Mutation p.A152S 0.30 tolerated(0.59) benign(0.085) TCGA-34-8455-01 2 119735447 119735447 G T MARCO Silent p.G234G 0.31 TCGA-34-8455-01 2 120219428 120219428 C A SCTR Missense_Mutation p.G262V 0.25 deleterious(0) probably_damaging(1) TCGA-34-8455-01 2 120219429 120219429 C A SCTR Nonsense_Mutation p.G262* 0.25 TCGA-34-8455-01 2 127827664 127827664 G A BIN1 Silent p.N106N 0.34 TCGA-34-8455-01 2 128334187 128334187 C G MYO7B Missense_Mutation p.N251K 0.22 deleterious(0) probably_damaging(0.995) TCGA-34-8455-01 2 128384659 128384659 C A MYO7B Missense_Mutation p.T1416K 0.18 tolerated(1) benign(0.013) TCGA-34-8455-01 2 131976059 131976059 C G POTEE Missense_Mutation p.C28W 0.33 deleterious_low_confidence(0) possibly_damaging(0.675) TCGA-34-8455-01 2 138030225 138030225 G T THSD7B Missense_Mutation p.V797L 0.14 tolerated(0.78) benign(0.198) TCGA-34-8455-01 2 141215152 141215152 C T LRP1B Missense_Mutation p.G3232R 0.24 probably_damaging(0.953) TCGA-34-8455-01 2 145156975 145156975 G C ZEB2 Silent p.P593P 0.30 TCGA-34-8455-01 2 15737559 15737559 A - DDX1 Frame_Shift_Del p.G77Efs*12 0.22 TCGA-34-8455-01 2 158390440 158390440 C A ACVR1C Missense_Mutation p.C491F 0.25 deleterious(0.01) benign(0.013) TCGA-34-8455-01 2 159196853 159196853 A G CCDC148 Silent p.P129P 0.34 TCGA-34-8455-01 2 166152478 166152478 G T SCN2A Missense_Mutation p.G49C 0.35 deleterious(0.03) possibly_damaging(0.754) TCGA-34-8455-01 2 166848544 166848544 G A SCN1A Silent p.N1747N 0.31 TCGA-34-8455-01 2 178982781 178982781 G A RBM45 Splice_Site p.X142_splice 0.23 TCGA-34-8455-01 2 179427876 179427876 A T TTN Silent p.P27661P 0.27 TCGA-34-8455-01 2 179580492 179580492 C T TTN Missense_Mutation p.R8550K 0.42 TCGA-34-8455-01 2 179632825 179632825 C A TTN Missense_Mutation p.R3074L 0.30 TCGA-34-8455-01 2 186672509 186672509 A T FSIP2 Missense_Mutation p.Q6248L 0.30 benign(0.021) TCGA-34-8455-01 2 187608238 187608238 C T FAM171B Silent p.F167F 0.20 TCGA-34-8455-01 2 187627196 187627196 G T FAM171B Silent p.V709V 0.27 TCGA-34-8455-01 2 192701081 192701081 T C SDPR Missense_Mutation p.I282M 0.29 tolerated(0.21) benign(0.012) TCGA-34-8455-01 2 193044268 193044268 T C TMEFF2 Intron 0.42 TCGA-34-8455-01 2 196545561 196545561 G T SLC39A10 Silent p.R265R 0.35 TCGA-34-8455-01 2 196741291 196741291 C T DNAH7 Missense_Mutation p.G2032S 0.25 deleterious(0.01) probably_damaging(0.922) TCGA-34-8455-01 2 198285234 198285234 C G SF3B1 Missense_Mutation p.K111N 0.27 tolerated(0.07) benign(0.011) TCGA-34-8455-01 2 201363684 201363684 T C KCTD18 Missense_Mutation p.K166E 0.26 deleterious(0) possibly_damaging(0.619) TCGA-34-8455-01 2 210559945 210559945 G A MAP2 Silent p.K1017K 0.32 TCGA-34-8455-01 2 210642095 210642095 G T UNC80 Missense_Mutation p.G138C 0.31 probably_damaging(0.998) TCGA-34-8455-01 2 227906937 227906937 T C COL4A4 Silent p.P1144P 0.18 TCGA-34-8455-01 2 227906938 227906938 G A COL4A4 Missense_Mutation p.P1144L 0.17 unknown(0) TCGA-34-8455-01 2 233223 233223 C G SH3YL1 Missense_Mutation p.L137F 0.29 tolerated(0.14) probably_damaging(0.936) TCGA-34-8455-01 2 238267225 238267225 C A COL6A3 Missense_Mutation p.G2137V 0.18 possibly_damaging(0.589) TCGA-34-8455-01 2 238267226 238267226 C G COL6A3 Missense_Mutation p.G2137R 0.19 probably_damaging(0.992) TCGA-34-8455-01 2 238285463 238285463 G T COL6A3 Missense_Mutation p.Q1008K 0.33 possibly_damaging(0.643) TCGA-34-8455-01 2 241463637 241463637 C T ANKMY1 Silent p.E410E 0.34 TCGA-34-8455-01 2 26689675 26689675 G T OTOF Silent p.S1469S 0.25 TCGA-34-8455-01 2 27353266 27353266 C A ABHD1 Missense_Mutation p.P330T 0.32 tolerated(0.12) probably_damaging(1) TCGA-34-8455-01 2 27802784 27802784 C T C2orf16 Silent p.V1115V 0.31 TCGA-34-8455-01 2 32117149 32117149 T A MEMO1 Silent p.S164S 0.14 TCGA-34-8455-01 2 32667445 32667445 A G BIRC6 Missense_Mutation p.D1387G 0.25 benign(0.223) TCGA-34-8455-01 2 37571895 37571895 G T QPCT Silent p.R7R 0.38 TCGA-34-8455-01 2 38178701 38178701 G C RMDN2 Missense_Mutation p.D115H 0.27 deleterious_low_confidence(0.03) benign(0.366) TCGA-34-8455-01 2 44078773 44078773 G T ABCG8 Missense_Mutation p.G125C 0.17 deleterious(0) probably_damaging(1) TCGA-34-8455-01 2 48807815 48807815 G C STON1-GTF2A1L Missense_Mutation p.D15H 0.30 deleterious(0) probably_damaging(0.999) TCGA-34-8455-01 2 50280484 50280484 A T NRXN1 Silent p.I1391I 0.32 TCGA-34-8455-01 2 54080318 54080318 C A GPR75 Nonsense_Mutation p.E526* 0.37 TCGA-34-8455-01 2 71592771 71592771 C G ZNF638 Missense_Mutation p.L644V 0.31 tolerated(0.55) benign(0.002) TCGA-34-8455-01 2 7179899 7179899 G A RNF144A 3'UTR 0.31 TCGA-34-8455-01 2 74386356 74386356 C T MOB1A Missense_Mutation p.M145I 0.35 tolerated(0.28) benign(0.002) TCGA-34-8455-01 2 75426142 75426142 A G TACR1 5'UTR 0.50 TCGA-34-8455-01 2 80801343 80801343 C A CTNNA2 Missense_Mutation p.N599K 0.31 tolerated(0.16) benign(0.106) TCGA-34-8455-01 2 85782636 85782636 C G GGCX Missense_Mutation p.L232F 0.23 deleterious(0) probably_damaging(0.997) TCGA-34-8455-01 2 87201207 87201207 G T RGPD1 Missense_Mutation p.A421S 0.15 tolerated(0.83) benign(0.38) TCGA-34-8455-01 2 88423976 88423976 C A FABP1 Intron 0.24 TCGA-34-8455-01 2 89416850 89416850 G T IGKV1-17 Missense_Mutation p.Q112K 0.29 deleterious(0.02) possibly_damaging(0.512) TCGA-34-8455-01 2 89513167 89513167 G A IGKV1-27 Missense_Mutation p.S31F 0.28 deleterious(0.01) benign(0.122) TCGA-34-8455-01 2 95540593 95540593 C A TEKT4 Silent p.A262A 0.29 TCGA-34-8455-01 2 96698061 96698061 C A GPAT2 Missense_Mutation p.S16I 0.21 deleterious_low_confidence(0.01) unknown(0) TCGA-34-8455-01 2 98846670 98846670 G T VWA3B Nonsense_Mutation p.E770* 0.29 TCGA-34-8455-01 3 100053565 100053565 G T NIT2 5'UTR 0.14 TCGA-34-8455-01 3 100951742 100951742 A T IMPG2 Missense_Mutation p.F1039Y 0.24 tolerated(1) benign(0) TCGA-34-8455-01 3 101520453 101520453 G T NXPE3 Silent p.G156G 0.29 TCGA-34-8455-01 3 108324265 108324265 A G DZIP3 Silent p.L4L 0.14 TCGA-34-8455-01 3 108474563 108474563 G T RETNLB 3'UTR 0.12 TCGA-34-8455-01 3 108474564 108474564 G T RETNLB 3'UTR 0.12 TCGA-34-8455-01 3 108672478 108672478 C T GUCA1C Silent p.L44L 0.20 TCGA-34-8455-01 3 108677807 108677807 C A MORC1 3'UTR 0.12 TCGA-34-8455-01 3 111426936 111426936 G T PLCXD2 Silent p.G109G 0.26 TCGA-34-8455-01 3 113955118 113955118 A G ZNF80 Silent p.S268S 0.19 TCGA-34-8455-01 3 122641116 122641116 G T SEMA5B Missense_Mutation p.T538K 0.24 tolerated(0.46) possibly_damaging(0.765) TCGA-34-8455-01 3 122944041 122944041 G A SEC22A Silent p.K146K 0.24 TCGA-34-8455-01 3 124413323 124413323 G A AC080008.1 3'Flank 0.24 TCGA-34-8455-01 3 126137545 126137545 T A CCDC37 Missense_Mutation p.L193Q 0.31 deleterious(0) probably_damaging(0.997) TCGA-34-8455-01 3 128199890 128199890 G T GATA2 Missense_Mutation p.P472Q 0.21 deleterious(0.02) possibly_damaging(0.498) TCGA-34-8455-01 3 131254131 131254131 G A CPNE4 Missense_Mutation p.P528S 0.21 deleterious(0) probably_damaging(0.996) TCGA-34-8455-01 3 133374189 133374189 G T TOPBP1 Nonsense_Mutation p.Y229* 0.16 TCGA-34-8455-01 3 133485204 133485204 G C TF Silent p.T471T 0.23 TCGA-34-8455-01 3 138478075 138478075 G A PIK3CB Silent p.P37P 0.29 TCGA-34-8455-01 3 148601543 148601543 C A CPA3 Missense_Mutation p.Q308K 0.23 deleterious(0) probably_damaging(1) TCGA-34-8455-01 3 158787167 158787167 G A IQCJ 5'UTR 0.20 TCGA-34-8455-01 3 164712102 164712102 G T SI Missense_Mutation p.T1595K 0.18 deleterious(0) probably_damaging(1) TCGA-34-8455-01 3 172165867 172165867 C G GHSR Missense_Mutation p.D113H 0.20 deleterious(0.02) probably_damaging(0.918) TCGA-34-8455-01 3 182605439 182605439 A G ATP11B Missense_Mutation p.I927M 0.26 tolerated(0.27) benign(0.034) TCGA-34-8455-01 3 184049299 184049299 G T EIF4G1 Missense_Mutation p.G1441C 0.24 deleterious(0.04) benign(0.052) TCGA-34-8455-01 3 193175254 193175254 C A ATP13A4 Nonsense_Mutation p.E559* 0.23 TCGA-34-8455-01 3 194061978 194061978 T A CPN2 Missense_Mutation p.N485I 0.26 deleterious(0) probably_damaging(0.987) TCGA-34-8455-01 3 30891528 30891528 A C GADL1 Missense_Mutation p.L204R 0.31 deleterious(0.01) probably_damaging(0.993) TCGA-34-8455-01 3 35770929 35770929 G - ARPP21 Frame_Shift_Del p.G421Afs*37 0.33 TCGA-34-8455-01 3 38597236 38597236 T A SCN5A Missense_Mutation p.I1485F 0.21 deleterious(0.01) possibly_damaging(0.84) TCGA-34-8455-01 3 50255426 50255426 G T SLC38A3 Intron 0.36 TCGA-34-8455-01 3 50255427 50255427 G T SLC38A3 Intron 0.36 TCGA-34-8455-01 3 52269094 52269094 G - TWF2 Frame_Shift_Del p.K19Rfs*13 0.31 TCGA-34-8455-01 3 52812462 52812462 C A ITIH1 Missense_Mutation p.A82D 0.32 deleterious(0) probably_damaging(0.968) TCGA-34-8455-01 3 78766563 78766563 T A ROBO1 Missense_Mutation p.E260V 0.53 deleterious(0) benign(0.111) TCGA-34-8455-01 3 88039855 88039855 C T HTR1F 5'UTR 0.42 TCGA-34-8455-01 3 89391085 89391085 C G EPHA3 Missense_Mutation p.P384R 0.40 deleterious(0) probably_damaging(1) TCGA-34-8455-01 3 89478288 89478288 G T EPHA3 Nonsense_Mutation p.E703* 0.30 TCGA-34-8455-01 3 97705668 97705668 C A GABRR3 Silent p.R421R 0.16 TCGA-34-8455-01 4 102020876 102020876 C A PPP3CA Missense_Mutation p.V130L 0.30 tolerated(0.3) probably_damaging(0.997) TCGA-34-8455-01 4 109000661 109000661 C G LEF1 Missense_Mutation p.D278H 0.28 tolerated(0.05) possibly_damaging(0.779) TCGA-34-8455-01 4 111539323 111539323 G C PITX2 Silent p.S311S 0.09 TCGA-34-8455-01 4 123949369 123949369 A G SPATA5 Missense_Mutation p.E633G 0.42 tolerated(0.07) benign(0.029) TCGA-34-8455-01 4 123949422 123949422 G T SPATA5 Nonsense_Mutation p.E651* 0.20 TCGA-34-8455-01 4 134072506 134072506 G A PCDH10 Missense_Mutation p.R404H 0.20 deleterious(0.01) probably_damaging(0.91) TCGA-34-8455-01 4 134073774 134073774 C A PCDH10 Missense_Mutation p.P827T 0.11 deleterious(0) possibly_damaging(0.701) TCGA-34-8455-01 4 134073775 134073775 C A PCDH10 Missense_Mutation p.P827H 0.13 deleterious(0) possibly_damaging(0.907) TCGA-34-8455-01 4 152096251 152096251 G A SH3D19 Missense_Mutation p.P89S 0.18 tolerated(0.43) benign(0.003) TCGA-34-8455-01 4 155156854 155156854 C A DCHS2 Nonsense_Mutation p.G2529* 0.22 TCGA-34-8455-01 4 155157651 155157651 T C DCHS2 Missense_Mutation p.N2263S 0.39 deleterious(0.02) benign(0.113) TCGA-34-8455-01 4 155461747 155461747 C A PLRG1 Missense_Mutation p.R313L 0.40 deleterious(0) probably_damaging(1) TCGA-34-8455-01 4 155491705 155491705 G T FGB Missense_Mutation p.G460V 0.13 deleterious(0) probably_damaging(0.998) TCGA-34-8455-01 4 160262773 160262773 G C RAPGEF2 Missense_Mutation p.Q703H 0.38 tolerated(0.19) benign(0.179) TCGA-34-8455-01 4 164246786 164246786 C A NPY1R Missense_Mutation p.C275F 0.43 deleterious(0.04) possibly_damaging(0.819) TCGA-34-8455-01 4 164435241 164435241 G T TMA16 Missense_Mutation p.W57L 0.16 deleterious(0) probably_damaging(1) TCGA-34-8455-01 4 164435242 164435242 G T TMA16 Missense_Mutation p.W57C 0.17 deleterious(0) probably_damaging(1) TCGA-34-8455-01 4 169195165 169195165 T C DDX60 Missense_Mutation p.T792A 0.21 deleterious(0) probably_damaging(0.96) TCGA-34-8455-01 4 169227793 169227793 T C DDX60 Missense_Mutation p.T115A 0.24 deleterious(0) possibly_damaging(0.896) TCGA-34-8455-01 4 177071085 177071085 G C WDR17 Missense_Mutation p.W699C 0.28 deleterious(0) probably_damaging(0.998) TCGA-34-8455-01 4 177098792 177098792 G T WDR17 Missense_Mutation p.G1279V 0.21 deleterious(0) probably_damaging(1) TCGA-34-8455-01 4 177605069 177605069 G T VEGFC 3'UTR 0.25 TCGA-34-8455-01 4 17887770 17887770 C G LCORL Missense_Mutation p.D233H 0.12 deleterious(0) probably_damaging(0.997) TCGA-34-8455-01 4 183674684 183674684 C A TENM3 Nonsense_Mutation p.S1315* 0.19 TCGA-34-8455-01 4 30921840 30921840 G T PCDH7 Missense_Mutation p.Q1080H 0.17 tolerated(0.71) benign(0.112) TCGA-34-8455-01 4 37839233 37839233 G T PGM2 Missense_Mutation p.V147L 0.33 deleterious(0.02) possibly_damaging(0.791) TCGA-34-8455-01 4 40122120 40122120 A G N4BP2 Missense_Mutation p.I797V 0.18 tolerated(0.15) benign(0.338) TCGA-34-8455-01 4 41015833 41015833 A T APBB2 Missense_Mutation p.I201N 0.39 tolerated(0.49) benign(0.009) TCGA-34-8455-01 4 48173467 48173467 C A TEC Splice_Site p.X82_splice 0.38 TCGA-34-8455-01 4 48994037 48994037 G T CWH43 Missense_Mutation p.W147C 0.14 deleterious(0) probably_damaging(0.998) TCGA-34-8455-01 4 5692993 5692993 A T EVC2 Missense_Mutation p.L173Q 0.33 tolerated(0.18) possibly_damaging(0.83) TCGA-34-8455-01 4 57204599 57204599 C A AASDH Missense_Mutation p.C1089F 0.25 deleterious(0) probably_damaging(0.971) TCGA-34-8455-01 4 62845491 62845491 G T LPHN3 Splice_Site p.X937_splice 0.34 TCGA-34-8455-01 4 68784912 68784912 G T TMPRSS11A Missense_Mutation p.T247K 0.23 deleterious(0.01) possibly_damaging(0.888) TCGA-34-8455-01 4 70361524 70361524 C T UGT2B4 Missense_Mutation p.S19N 0.18 tolerated(0.18) benign(0.012) TCGA-34-8455-01 4 71508882 71508882 C A ENAM Missense_Mutation p.P580Q 0.36 tolerated(0.06) probably_damaging(0.913) TCGA-34-8455-01 4 73990687 73990687 C A ANKRD17 Missense_Mutation p.Q1145H 0.30 probably_damaging(0.937) TCGA-34-8455-01 4 7725569 7725569 C T SORCS2 Missense_Mutation p.T857M 0.34 tolerated(0.36) benign(0.023) TCGA-34-8455-01 4 77817645 77817645 C A SOWAHB Missense_Mutation p.R453L 0.32 tolerated(0.24) benign(0.25) TCGA-34-8455-01 4 94376963 94376963 G T GRID2 Missense_Mutation p.D566Y 0.37 deleterious(0) probably_damaging(0.992) TCGA-34-8455-01 5 118824964 118824964 G A HSD17B4 Missense_Mutation p.G259S 0.43 deleterious(0.02) possibly_damaging(0.831) TCGA-34-8455-01 5 121758814 121758814 G A SNCAIP Missense_Mutation p.G128S 0.49 tolerated(0.25) benign(0.006) TCGA-34-8455-01 5 131549733 131549733 G C P4HA2 Missense_Mutation p.N115K 0.58 deleterious(0.01) probably_damaging(1) TCGA-34-8455-01 5 140769788 140769788 C A PCDHGB4 Nonsense_Mutation p.C779* 0.50 TCGA-34-8455-01 5 140787865 140787865 G T PCDHGB6 Silent p.P32P 0.42 TCGA-34-8455-01 5 147862820 147862820 C A HTR4 Missense_Mutation p.Q411H 0.31 tolerated_low_confidence(0.12) benign(0.002) TCGA-34-8455-01 5 169127139 169127139 G C DOCK2 Missense_Mutation p.M418I 0.41 deleterious(0.01) possibly_damaging(0.472) TCGA-34-8455-01 5 169494601 169494601 G A DOCK2 Missense_Mutation p.D1519N 0.48 deleterious(0.03) possibly_damaging(0.833) TCGA-34-8455-01 5 171326922 171326922 C A FBXW11 Missense_Mutation p.G186W 0.45 deleterious(0) possibly_damaging(0.472) TCGA-34-8455-01 5 23526573 23526573 G C PRDM9 Missense_Mutation p.R459T 0.34 tolerated(0.58) benign(0.011) TCGA-34-8455-01 5 251213 251213 A T SDHA Missense_Mutation p.D553V 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-34-8455-01 5 31799689 31799689 C T PDZD2 Missense_Mutation p.P112S 0.20 deleterious(0) probably_damaging(1) TCGA-34-8455-01 5 36986095 36986095 A G NIPBL Missense_Mutation p.K938R 0.19 tolerated_low_confidence(0.16) benign(0.149) TCGA-34-8455-01 5 446429 446429 G C EXOC3 Missense_Mutation p.A37P 0.19 tolerated(0.06) probably_damaging(0.981) TCGA-34-8455-01 5 45262159 45262159 G C HCN1 Missense_Mutation p.S846W 0.28 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-34-8455-01 5 45303919 45303919 C G HCN1 Missense_Mutation p.R467P 0.20 deleterious(0) probably_damaging(0.996) TCGA-34-8455-01 5 49695092 49695092 C A EMB 3'UTR 0.15 TCGA-34-8455-01 5 5223019 5223019 C A ADAMTS16 Intron 0.16 TCGA-34-8455-01 5 55407566 55407566 G T ANKRD55 Missense_Mutation p.Q337K 0.42 tolerated_low_confidence(0.95) benign(0.048) TCGA-34-8455-01 5 55407567 55407567 G T ANKRD55 Silent p.P336P 0.43 TCGA-34-8455-01 5 71492948 71492948 A T MAP1B Missense_Mutation p.S1256C 0.45 probably_damaging(0.997) TCGA-34-8455-01 5 9337883 9337883 C A SEMA5A Missense_Mutation p.V56L 0.17 tolerated(0.65) probably_damaging(0.99) TCGA-34-8455-01 5 94956010 94956010 C - GPR150 Frame_Shift_Del p.P11Rfs*18 0.23 TCGA-34-8455-01 6 101296053 101296053 T A ASCC3 Missense_Mutation p.I258F 0.36 deleterious(0.05) benign(0.002) TCGA-34-8455-01 6 10400823 10400823 C A TFAP2A Splice_Site p.X295_splice 0.40 TCGA-34-8455-01 6 116442507 116442507 G T AL121963.1 Missense_Mutation p.R54L 0.22 tolerated_low_confidence(0.72) unknown(0) TCGA-34-8455-01 6 118596725 118596725 G T SLC35F1 Silent p.V247V 0.29 TCGA-34-8455-01 6 126805851 126805851 G T MIR588 RNA 0.25 TCGA-34-8455-01 6 126805852 126805852 G T MIR588 RNA 0.31 TCGA-34-8455-01 6 129419484 129419484 C A LAMA2 Missense_Mutation p.P188Q 0.33 deleterious(0.01) possibly_damaging(0.513) TCGA-34-8455-01 6 130762771 130762771 C A TMEM200A Silent p.R402R 0.07 TCGA-34-8455-01 6 131913565 131913565 C G MED23 Missense_Mutation p.W1145S 0.25 deleterious(0) probably_damaging(0.995) TCGA-34-8455-01 6 132171183 132171183 G C ENPP1 Missense_Mutation p.D123H 0.18 deleterious(0.02) probably_damaging(1) TCGA-34-8455-01 6 132270640 132270640 C A CTGF Missense_Mutation p.G272C 0.31 deleterious(0) probably_damaging(1) TCGA-34-8455-01 6 132892241 132892241 G T TAAR6 Missense_Mutation p.G261W 0.07 deleterious(0) probably_damaging(1) TCGA-34-8455-01 6 133044946 133044946 G C VNN3 3'UTR 0.17 TCGA-34-8455-01 6 134495954 134495954 C A SGK1 Intron 0.41 TCGA-34-8455-01 6 148865374 148865374 C G SASH1 Nonsense_Mutation p.S923* 0.22 TCGA-34-8455-01 6 152129455 152129455 C T ESR1 Silent p.P136P 0.46 TCGA-34-8455-01 6 152599241 152599241 T A SYNE1 Nonsense_Mutation p.K6186* 0.16 TCGA-34-8455-01 6 152755038 152755038 A G SYNE1 Silent p.F1451F 0.14 TCGA-34-8455-01 6 165712935 165712935 G T C6orf118 Nonsense_Mutation p.Y311* 0.30 TCGA-34-8455-01 6 166581077 166581077 C T T Translation_Start_Site p.M1? 0.33 deleterious_low_confidence(0.01) benign(0.146) TCGA-34-8455-01 6 168299086 168299086 G T MLLT4 Missense_Mutation p.A507S 0.28 tolerated(0.71) benign(0.008) TCGA-34-8455-01 6 170697424 170697424 G T FAM120B Missense_Mutation p.R778L 0.29 deleterious(0) probably_damaging(0.997) TCGA-34-8455-01 6 25776839 25776839 C - SLC17A4 Frame_Shift_Del p.L336Cfs*45 0.31 TCGA-34-8455-01 6 26104260 26104260 G T HIST1H4C Missense_Mutation p.G29C 0.09 deleterious(0) probably_damaging(1) TCGA-34-8455-01 6 26104261 26104261 G A HIST1H4C Missense_Mutation p.G29D 0.08 deleterious(0) probably_damaging(0.997) TCGA-34-8455-01 6 28473537 28473537 G C GPX6 Silent p.L134L 0.42 TCGA-34-8455-01 6 28829476 28829476 G T XXbac-BPG308K3.6 RNA 0.62 TCGA-34-8455-01 6 29012947 29012947 G T OR2W1 Missense_Mutation p.D2E 0.34 tolerated(1) benign(0.002) TCGA-34-8455-01 6 29640810 29640810 G T ZFP57 Missense_Mutation p.P360T 0.36 tolerated(0.11) benign(0.01) TCGA-34-8455-01 6 3012775 3012775 C T NQO2 Intron 0.29 TCGA-34-8455-01 6 30954783 30954783 A C MUC21 Silent p.T277T 0.18 TCGA-34-8455-01 6 37186682 37186682 C T TMEM217 Missense_Mutation p.C42Y 0.14 tolerated(0.28) probably_damaging(0.999) TCGA-34-8455-01 6 41060823 41060823 G T NFYA Missense_Mutation p.R296M 0.39 deleterious(0) probably_damaging(0.95) TCGA-34-8455-01 6 45909350 45909350 C A CLIC5 Missense_Mutation p.A273S 0.19 deleterious(0.01) probably_damaging(0.989) TCGA-34-8455-01 6 50683216 50683216 C A TFAP2D Missense_Mutation p.H143N 0.23 tolerated(0.68) benign(0.01) TCGA-34-8455-01 6 73787593 73787593 G T KCNQ5 Missense_Mutation p.A301S 0.25 tolerated(0.2) possibly_damaging(0.773) TCGA-34-8455-01 6 80721186 80721186 G A TTK Missense_Mutation p.G217S 0.24 tolerated(1) benign(0) TCGA-34-8455-01 6 80912907 80912907 G T BCKDHB Missense_Mutation p.W310L 0.20 deleterious(0.02) benign(0.387) TCGA-34-8455-01 6 82933186 82933186 T C IBTK Silent p.A365A 0.33 TCGA-34-8455-01 6 90562929 90562929 G T CASP8AP2 RNA 0.25 TCGA-34-8455-01 6 97677201 97677201 T C MMS22L Silent p.L536L 0.34 TCGA-34-8455-01 6 99322113 99322113 C A FBXL4 3'UTR 0.26 TCGA-34-8455-01 7 100151087 100151087 A G AGFG2 Silent p.A183A 0.16 TCGA-34-8455-01 7 100482591 100482591 C A SRRT Missense_Mutation p.D363E 0.17 tolerated(0.41) possibly_damaging(0.878) TCGA-34-8455-01 7 100608878 100608878 G T MUC3A Missense_Mutation p.G753C 0.11 deleterious(0) probably_damaging(1) TCGA-34-8455-01 7 100732316 100732316 C T TRIM56 Missense_Mutation p.P575S 0.18 tolerated(0.74) benign(0.004) TCGA-34-8455-01 7 103841214 103841214 C G ORC5 Missense_Mutation p.V120L 0.43 tolerated(0.69) benign(0.005) TCGA-34-8455-01 7 107710210 107710210 C G LAMB4 Missense_Mutation p.G749R 0.40 tolerated(0.15) benign(0.01) TCGA-34-8455-01 7 108137967 108137967 T A PNPLA8 Silent p.P471P 0.32 TCGA-34-8455-01 7 117171058 117171058 T C CFTR Silent p.L127L 0.31 TCGA-34-8455-01 7 127544871 127544871 G T SND1 Missense_Mutation p.G509V 0.25 tolerated(0.1) possibly_damaging(0.575) TCGA-34-8455-01 7 127725796 127725796 T G SND1 Silent p.P756P 0.20 TCGA-34-8455-01 7 127892113 127892113 C A LEP Silent p.P14P 0.17 TCGA-34-8455-01 7 128455923 128455923 G T CCDC136 Missense_Mutation p.A1101S 0.17 tolerated(0.56) benign(0) TCGA-34-8455-01 7 135263499 135263499 A G NUP205 Missense_Mutation p.D293G 0.40 deleterious(0.03) benign(0.41) TCGA-34-8455-01 7 135276233 135276233 C T NUP205 Silent p.D503D 0.16 TCGA-34-8455-01 7 136938312 136938312 C T PTN Missense_Mutation p.G63E 0.15 deleterious(0) probably_damaging(0.994) TCGA-34-8455-01 7 138441232 138441232 G T ATP6V0A4 Silent p.L231L 0.19 TCGA-34-8455-01 7 138763389 138763389 A G ZC3HAV1 Silent p.S494S 0.37 TCGA-34-8455-01 7 141758010 141758010 G T MGAM Missense_Mutation p.G1234V 0.34 deleterious(0) probably_damaging(1) TCGA-34-8455-01 7 142919758 142919758 T A TAS2R40 Missense_Mutation p.F196Y 0.30 tolerated(0.06) benign(0.053) TCGA-34-8455-01 7 143140666 143140666 G A TAS2R60 Missense_Mutation p.A41T 0.29 tolerated(0.16) benign(0.109) TCGA-34-8455-01 7 143792883 143792883 A T OR2A12 Missense_Mutation p.Q228L 0.38 deleterious(0.02) possibly_damaging(0.493) TCGA-34-8455-01 7 30538492 30538492 C A GGCT Missense_Mutation p.G117V 0.25 deleterious(0) probably_damaging(0.931) TCGA-34-8455-01 7 30538493 30538493 C G GGCT Missense_Mutation p.G117R 0.25 deleterious(0.04) possibly_damaging(0.625) TCGA-34-8455-01 7 34867214 34867214 G T NPSR1 Missense_Mutation p.S227I 0.43 deleterious(0) possibly_damaging(0.898) TCGA-34-8455-01 7 44119224 44119224 C A POLM Silent p.L196L 0.42 TCGA-34-8455-01 7 44251953 44251953 A T YKT6 3'UTR 0.17 TCGA-34-8455-01 7 44425722 44425722 T C NUDCD3 Splice_Site p.X326_splice 0.45 TCGA-34-8455-01 7 4901390 4901390 G T PAPOLB Missense_Mutation p.P17T 0.29 tolerated(0.31) possibly_damaging(0.559) TCGA-34-8455-01 7 55863651 55863651 A T SEPT14 Silent p.T418T 0.18 TCGA-34-8455-01 7 5922181 5922181 C A OCM Nonsense_Mutation p.S40* 0.15 TCGA-34-8455-01 7 72722806 72722806 G A NSUN5 5'UTR 0.17 TCGA-34-8455-01 7 72856522 72856523 CT - BAZ1B 3'UTR 0.31 TCGA-34-8455-01 7 82595771 82595771 G A PCLO Silent p.T1111T 0.14 TCGA-34-8455-01 7 91708480 91708480 A G AKAP9 Missense_Mutation p.R2345G 0.35 benign(0.157) TCGA-34-8455-01 7 96747065 96747065 G C ACN9 Silent p.R10R 0.08 TCGA-34-8455-01 8 105361742 105361742 T G DCSTAMP Missense_Mutation p.I321S 0.34 deleterious(0) probably_damaging(0.965) TCGA-34-8455-01 8 105368413 105368413 C A DCSTAMP Missense_Mutation p.A467E 0.18 tolerated(1) benign(0) TCGA-34-8455-01 8 110346326 110346326 C T NUDCD1 5'UTR 0.17 TCGA-34-8455-01 8 131964182 131964182 G T ADCY8 Silent p.T391T 0.32 TCGA-34-8455-01 8 133650215 133650215 C A LRRC6 Missense_Mutation p.R132M 0.32 deleterious(0) probably_damaging(0.996) TCGA-34-8455-01 8 139890220 139890220 T A COL22A1 Missense_Mutation p.Q144L 0.36 unknown(0) TCGA-34-8455-01 8 141828978 141828978 C A PTK2 Splice_Site p.X263_splice 0.22 TCGA-34-8455-01 8 145582993 145582993 C T SLC52A2 Silent p.L14L 0.36 TCGA-34-8455-01 8 145698583 145698583 A T KIFC2 Missense_Mutation p.K756M 0.36 deleterious_low_confidence(0.01) benign(0.099) TCGA-34-8455-01 8 25340942 25340942 G C CDCA2 Missense_Mutation p.D354H 0.37 deleterious(0.01) probably_damaging(0.937) TCGA-34-8455-01 8 38700911 38700911 C A TACC1 Missense_Mutation p.D742E 0.09 deleterious(0) benign(0.262) TCGA-34-8455-01 8 39624694 39624694 C A ADAM2 Missense_Mutation p.G430V 0.33 deleterious(0) probably_damaging(0.999) TCGA-34-8455-01 8 39836622 39836622 C T IDO2 Missense_Mutation p.R91W 0.17 deleterious(0) probably_damaging(0.996) TCGA-34-8455-01 8 39836623 39836623 G T IDO2 Missense_Mutation p.R91L 0.16 deleterious(0) probably_damaging(0.948) TCGA-34-8455-01 8 56270266 56270266 C A XKR4 Silent p.R279R 0.33 TCGA-34-8455-01 8 61765954 61765954 G A CHD7 Missense_Mutation p.G2224S 0.33 benign(0.003) TCGA-34-8455-01 8 70744557 70744557 T A SLCO5A1 Missense_Mutation p.R118W 0.40 deleterious_low_confidence(0) benign(0.017) TCGA-34-8455-01 8 72935317 72935317 G T TRPA1 Missense_Mutation p.H1062N 0.21 deleterious(0.03) probably_damaging(0.995) TCGA-34-8455-01 8 77616315 77616315 G A ZFHX4 5'UTR 0.44 TCGA-34-8455-01 8 77618037 77618037 G T ZFHX4 Missense_Mutation p.A572S 0.22 benign(0.005) TCGA-34-8455-01 8 77618620 77618620 C A ZFHX4 Missense_Mutation p.T766N 0.24 possibly_damaging(0.607) TCGA-34-8455-01 8 77766232 77766232 G T ZFHX4 Missense_Mutation p.V2359L 0.28 benign(0.027) TCGA-34-8455-01 8 80915351 80915351 C A MRPS28 Missense_Mutation p.G93V 0.14 deleterious(0.04) probably_damaging(1) TCGA-34-8455-01 8 87235201 87235201 C T SLC7A13 Missense_Mutation p.D273N 0.25 tolerated(0.12) possibly_damaging(0.836) TCGA-34-8455-01 8 95877880 95877880 A T INTS8 Missense_Mutation p.L741F 0.27 tolerated(0.07) probably_damaging(0.92) TCGA-34-8455-01 9 100692665 100692665 G T HEMGN Missense_Mutation p.P338T 0.45 tolerated(0.41) possibly_damaging(0.482) TCGA-34-8455-01 9 104449077 104449077 C A GRIN3A Missense_Mutation p.G369C 0.34 deleterious(0) probably_damaging(0.989) TCGA-34-8455-01 9 115652737 115652737 G T SLC46A2 Silent p.S75S 0.37 TCGA-34-8455-01 9 125437499 125437499 T A OR1L3 Missense_Mutation p.F31I 0.45 deleterious(0) possibly_damaging(0.578) TCGA-34-8455-01 9 127549516 127549516 A T OLFML2A Missense_Mutation p.K118M 0.42 deleterious(0) probably_damaging(0.996) TCGA-34-8455-01 9 21187364 21187364 C A IFNA4 Missense_Mutation p.R56I 0.46 deleterious(0.01) possibly_damaging(0.848) TCGA-34-8455-01 9 21974730 21974730 C A CDKN2A Nonsense_Mutation p.E33* 0.46 TCGA-34-8455-01 9 21974731 21974731 C T CDKN2A Silent p.L32L 0.46 TCGA-34-8455-01 9 23692676 23692676 C A ELAVL2 Missense_Mutation p.G320V 0.29 deleterious(0) probably_damaging(0.999) TCGA-34-8455-01 9 311994 311994 G T DOCK8 Missense_Mutation p.G190V 0.42 tolerated(0.1) benign(0.197) TCGA-34-8455-01 9 67951955 67951955 A T ANKRD20A1 Silent p.S306S 0.19 TCGA-34-8455-01 9 94486778 94486778 G T ROR2 Nonsense_Mutation p.Y666* 0.67 TCGA-34-8455-01 X 110463696 110463696 A T PAK3 3'UTR 0.65 TCGA-34-8455-01 X 119562258 119562258 T C LAMP2 3'UTR 0.50 TCGA-34-8455-01 X 122616655 122616655 G C GRIA3 Missense_Mutation p.K815N 0.56 deleterious(0.02) probably_damaging(0.976) TCGA-34-8455-01 X 148038099 148038099 A T AFF2 Missense_Mutation p.T842S 0.66 tolerated(0.54) benign(0.002) TCGA-34-8455-01 X 150828235 150828235 T C PASD1 Silent p.V256V 0.59 TCGA-34-8455-01 X 151284174 151284174 C T RP11-1007I13.4 RNA 0.57 TCGA-34-8455-01 X 1522108 1522108 G A ASMTL 3'UTR 0.25 TCGA-34-8455-01 X 34962455 34962455 G C FAM47B Missense_Mutation p.E503Q 0.77 tolerated(0.53) probably_damaging(0.995) TCGA-34-8455-01 X 44703853 44703853 A C DUSP21 Missense_Mutation p.K159Q 0.67 tolerated(0.37) benign(0.088) TCGA-34-8455-01 X 44820556 44820556 T - KDM6A Frame_Shift_Del p.L85* 0.44 TCGA-34-8455-01 X 47918670 47918670 C T ZNF630 Missense_Mutation p.M387I 0.55 deleterious(0) benign(0.008) TCGA-34-8455-01 X 48419121 48419121 C T TBC1D25 Nonsense_Mutation p.Q609* 0.63 TCGA-34-8455-01 X 54335679 54335679 C T WNK3 Silent p.G260G 0.48 TCGA-34-8455-01 X 69282452 69282452 C G OTUD6A Missense_Mutation p.I26M 0.75 deleterious(0) probably_damaging(0.989) TCGA-34-8455-01 X 71886092 71886092 C A PHKA1 Missense_Mutation p.S258I 0.59 deleterious(0) probably_damaging(0.95) TCGA-34-8455-01 X 73065169 73065169 T A XIST RNA 0.66 TCGA-34-8455-01 X 73068384 73068384 C A XIST RNA 0.42 TCGA-34-8455-01 X 73071131 73071131 G C XIST RNA 0.58 TCGA-34-8455-01 X 73962270 73962270 C A KIAA2022 Nonsense_Mutation p.E708* 0.48 TCGA-34-8455-01 X 78616940 78616940 C A ITM2A Nonsense_Mutation p.E197* 0.64 TCGA-34-8455-01 X 85119751 85119751 G A CHM Missense_Mutation p.L616F 0.44 tolerated(0.6) benign(0.001) TCGA-34-8455-01 X 91132520 91132520 G T PCDH11X Missense_Mutation p.E427D 0.51 deleterious(0) probably_damaging(0.999) TCGA-34-8456-01 10 32856700 32856700 C T CCDC7 Nonsense_Mutation p.Q434* 0.09 TCGA-34-8456-01 10 48426533 48426533 T C GDF10 3'UTR 0.42 TCGA-34-8456-01 10 50966594 50966594 A T OGDHL Silent p.A15A 0.07 TCGA-34-8456-01 11 124310439 124310439 G A OR8B8 Silent p.I181I 0.11 TCGA-34-8456-01 11 18764045 18764045 C T PTPN5 Nonsense_Mutation p.W163* 0.42 TCGA-34-8456-01 11 40136219 40136219 C T LRRC4C Missense_Mutation p.V542M 0.37 deleterious(0.01) probably_damaging(0.957) TCGA-34-8456-01 11 49598271 49598271 C G RP11-707M1.1 RNA 0.34 TCGA-34-8456-01 14 22600517 22600517 G A TRAV8-7 Translation_Start_Site p.M1? 0.30 deleterious(0.03) probably_damaging(0.976) TCGA-34-8456-01 14 45374590 45374590 C T C14orf28 Missense_Mutation p.T257I 0.09 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-34-8456-01 15 22383199 22383199 C T OR4N4 Missense_Mutation p.R243C 0.16 deleterious(0) possibly_damaging(0.512) TCGA-34-8456-01 17 3704470 3704470 C A ITGAE 5'UTR 0.25 TCGA-34-8456-01 17 47120835 47120835 C T IGF2BP1 Missense_Mutation p.L375F 0.59 deleterious(0.05) possibly_damaging(0.786) TCGA-34-8456-01 19 18054463 18054463 G T CCDC124 Missense_Mutation p.W204L 0.14 deleterious(0) probably_damaging(1) TCGA-34-8456-01 1 10228326 10228326 C G UBE4B Missense_Mutation p.P1111A 0.39 tolerated(0.06) possibly_damaging(0.679) TCGA-34-8456-01 1 13940895 13940895 G T PDPN Silent p.S233S 0.41 TCGA-34-8456-01 1 16945514 16945514 C T RP5-1182A14.5 3'Flank 0.07 TCGA-34-8456-01 1 204588179 204588179 C G LRRN2 Missense_Mutation p.K314N 0.23 deleterious(0) probably_damaging(1) TCGA-34-8456-01 20 29632681 29632681 G A FRG1B Missense_Mutation p.A166T 0.05 deleterious(0) probably_damaging(0.997) TCGA-34-8456-01 22 24943882 24943882 C A GUCD1 Missense_Mutation p.K96N 0.12 deleterious(0.01) benign(0.003) TCGA-34-8456-01 2 190426841 190426841 A G SLC40A1 Silent p.N493N 0.07 TCGA-34-8456-01 2 24290548 24290548 C A SF3B14 3'UTR 0.41 TCGA-34-8456-01 2 9508558 9508558 C T ASAP2 Missense_Mutation p.A489V 0.21 deleterious(0.01) probably_damaging(0.964) TCGA-34-8456-01 4 155305569 155305569 A G DCHS2 Missense_Mutation p.I62T 0.34 tolerated_low_confidence(0.32) benign(0) TCGA-34-8456-01 4 159638335 159638335 T A PPID Missense_Mutation p.L117F 0.05 deleterious(0) probably_damaging(0.987) TCGA-34-8456-01 4 162463835 162463835 G A FSTL5 Silent p.V342V 0.14 TCGA-34-8456-01 4 183268083 183268083 G A TENM3 Splice_Site p.X171_splice 0.14 TCGA-34-8456-01 4 46060235 46060235 C A GABRG1 Missense_Mutation p.L305F 0.53 tolerated(0.58) possibly_damaging(0.876) TCGA-34-8456-01 4 89627900 89627900 C T HERC3 Intron 0.24 TCGA-34-8456-01 5 33576763 33576763 G T ADAMTS12 Missense_Mutation p.T1123K 0.08 tolerated(0.78) possibly_damaging(0.748) TCGA-34-8456-01 5 850570 850570 C A ZDHHC11 Missense_Mutation p.V50L 0.36 tolerated(1) benign(0.001) TCGA-34-8456-01 6 152675878 152675878 G A SYNE1 Silent p.L3614L 0.25 TCGA-34-8456-01 6 43272077 43272077 T A SLC22A7 Intron 0.23 TCGA-34-8456-01 6 46826115 46826115 G A GPR116 Silent p.F1175F 0.09 TCGA-34-8456-01 7 150733024 150733024 G A ABCB8 Missense_Mutation p.R328H 0.05 deleterious(0) probably_damaging(0.992) TCGA-34-8456-01 7 30490996 30490996 G A NOD1 Silent p.Y679Y 0.34 TCGA-34-8456-01 7 82584711 82584711 C A PCLO Missense_Mutation p.R1853I 0.15 unknown(0) TCGA-34-8456-01 8 101243452 101243452 G A SPAG1 Missense_Mutation p.A642T 0.27 deleterious(0) probably_damaging(0.996) TCGA-34-8456-01 8 69445301 69445301 A G C8orf34 Missense_Mutation p.D341G 0.05 deleterious(0.01) probably_damaging(0.975) TCGA-34-8456-01 8 77761763 77761763 T C ZFHX4 Missense_Mutation p.Y1221H 0.31 benign(0.065) TCGA-34-8456-01 X 135391006 135391006 G A GPR112 Missense_Mutation p.D24N 0.28 tolerated(0.07) benign(0.012) TCGA-34-8456-01 X 139586869 139586869 C G SOX3 Silent p.S119S 0.21 TCGA-34-8456-01 X 148564677 148564677 A C IDS Missense_Mutation p.V207G 0.15 deleterious(0.05) benign(0.021) TCGA-34-8456-01 X 148627243 148627243 G A CXorf40A Missense_Mutation p.V23M 0.14 deleterious(0.02) benign(0.132) TCGA-34-8456-01 X 15646099 15646099 G C TMEM27 Missense_Mutation p.L222V 0.24 deleterious(0) probably_damaging(0.959) TCGA-34-8456-01 X 18915285 18915285 T C PHKA2 Missense_Mutation p.Q1093R 0.11 tolerated(0.2) benign(0.331) TCGA-34-8456-01 X 2928097 2928097 G C ARSH Missense_Mutation p.S40T 0.18 tolerated(0.17) benign(0.002) TCGA-34-8456-01 X 34149053 34149053 C A FAM47A Missense_Mutation p.R448L 0.21 tolerated(0.14) probably_damaging(0.969) TCGA-34-8456-01 X 54838022 54838022 T C MAGED2 Missense_Mutation p.I309T 0.22 deleterious(0) benign(0.091) TCGA-34-8456-01 X 8759412 8759412 C T FAM9A Silent p.K313K 0.40 TCGA-34-A5IX-01 10 100011406 100011406 C G LOXL4 Missense_Mutation p.G669R 0.27 deleterious(0) probably_damaging(0.999) TCGA-34-A5IX-01 10 102747235 102747235 G A MRPL43 5'UTR 0.39 TCGA-34-A5IX-01 10 106970963 106970963 C T SORCS3 Missense_Mutation p.P777L 0.46 tolerated(0.42) benign(0.001) TCGA-34-A5IX-01 10 26856336 26856336 C A APBB1IP Silent p.P640P 0.28 TCGA-34-A5IX-01 10 35896835 35896835 G C GJD4 Missense_Mutation p.G132R 0.24 tolerated(0.4) benign(0.003) TCGA-34-A5IX-01 10 38407767 38407767 G T ZNF37A 3'UTR 0.39 TCGA-34-A5IX-01 10 55600169 55600169 A T PCDH15 Missense_Mutation p.F1298L 0.29 tolerated(0.26) benign(0.009) TCGA-34-A5IX-01 10 81929097 81929097 C - ANXA11 Frame_Shift_Del p.T64Hfs*87 0.32 TCGA-34-A5IX-01 10 98079078 98079078 T A DNTT Silent p.A146A 0.31 TCGA-34-A5IX-01 10 98079093 98079093 C A DNTT Silent p.S151S 0.32 TCGA-34-A5IX-01 11 100999564 100999564 G A PGR Silent p.L80L 0.13 TCGA-34-A5IX-01 11 101375175 101375175 C G TRPC6 Silent p.R175R 0.09 TCGA-34-A5IX-01 11 122733197 122733197 T A CRTAM Missense_Mutation p.D226E 0.33 tolerated(0.26) benign(0.006) TCGA-34-A5IX-01 11 123810958 123810958 T C OR4D5 Missense_Mutation p.L212P 0.17 deleterious(0) probably_damaging(0.999) TCGA-34-A5IX-01 11 125647156 125647156 T A PATE2 3'UTR 0.64 TCGA-34-A5IX-01 11 134086840 134086840 T C NCAPD3 Silent p.L124L 0.05 TCGA-34-A5IX-01 11 134214936 134214936 T C GLB1L2 Missense_Mutation p.V121A 0.21 deleterious(0) benign(0.05) TCGA-34-A5IX-01 11 15099016 15099016 G T CALCB Intron 0.20 TCGA-34-A5IX-01 11 19077047 19077047 C A MRGPRX2 Missense_Mutation p.Q301H 0.30 deleterious(0) possibly_damaging(0.482) TCGA-34-A5IX-01 11 2161401 2161401 C A IGF2 Missense_Mutation p.E42D 0.16 tolerated_low_confidence(0.1) benign(0.042) TCGA-34-A5IX-01 11 281811 281811 C G NLRP6 Missense_Mutation p.R693G 0.27 deleterious(0.01) possibly_damaging(0.899) TCGA-34-A5IX-01 11 47299794 47299794 G T MADD Missense_Mutation p.D392Y 0.35 deleterious(0) probably_damaging(0.997) TCGA-34-A5IX-01 11 47330844 47330844 C G MADD Missense_Mutation p.S1315C 0.14 deleterious(0) probably_damaging(0.998) TCGA-34-A5IX-01 11 48238385 48238385 T A OR4B1 Silent p.T8T 0.05 TCGA-34-A5IX-01 11 55735850 55735850 C T OR10AG1 Silent p.L30L 0.18 TCGA-34-A5IX-01 11 55904959 55904959 G C OR8J3 Missense_Mutation p.P79R 0.13 deleterious(0) probably_damaging(0.999) TCGA-34-A5IX-01 11 5665021 5665021 T A TRIM34 3'UTR 0.24 TCGA-34-A5IX-01 11 60777173 60777173 A T CD6 Missense_Mutation p.Q304L 0.29 deleterious(0) possibly_damaging(0.593) TCGA-34-A5IX-01 11 64428371 64428371 A G NRXN2 Missense_Mutation p.V680A 0.11 tolerated(1) benign(0) TCGA-34-A5IX-01 11 64434918 64434918 C A NRXN2 Missense_Mutation p.Q534H 0.37 tolerated(1) benign(0.112) TCGA-34-A5IX-01 11 67059102 67059102 C T ANKRD13D Silent p.S142S 0.10 TCGA-34-A5IX-01 11 67352230 67352230 G - GSTP1 Frame_Shift_Del p.G74Afs*20 0.09 TCGA-34-A5IX-01 11 74800675 74800675 G T OR2AT4 Missense_Mutation p.F28L 0.14 tolerated(1) benign(0.001) TCGA-34-A5IX-01 11 85342820 85342820 A G TMEM126B Missense_Mutation p.I57M 0.11 tolerated(0.12) possibly_damaging(0.544) TCGA-34-A5IX-01 11 88042402 88042402 G T CTSC Nonsense_Mutation p.Y190* 0.24 TCGA-34-A5IX-01 11 89402620 89402620 T C FOLH1B RNA 0.09 TCGA-34-A5IX-01 11 94113613 94113613 G C GPR83 Missense_Mutation p.A325G 0.36 tolerated(0.28) benign(0.119) TCGA-34-A5IX-01 12 103310880 103310880 C A PAH Missense_Mutation p.G10V 0.25 tolerated(0.17) benign(0.001) TCGA-34-A5IX-01 12 103984787 103984787 C A STAB2 Missense_Mutation p.S65Y 0.29 deleterious(0) possibly_damaging(0.529) TCGA-34-A5IX-01 12 118599735 118599735 G A TAOK3 Missense_Mutation p.T666M 0.27 tolerated(0.1) benign(0.011) TCGA-34-A5IX-01 12 124382441 124382441 C A DNAH10 Silent p.V3017V 0.31 TCGA-34-A5IX-01 12 132393452 132393452 G C ULK1 Missense_Mutation p.G167A 0.11 deleterious(0.01) probably_damaging(1) TCGA-34-A5IX-01 12 132399943 132399943 G T ULK1 Missense_Mutation p.R529L 0.41 deleterious(0.03) benign(0.187) TCGA-34-A5IX-01 12 26277838 26277838 T C BHLHE41 5'UTR 0.43 TCGA-34-A5IX-01 12 42859032 42859032 G A PRICKLE1 Silent p.D268D 0.33 TCGA-34-A5IX-01 12 4920049 4920049 G A KCNA6 Missense_Mutation p.R281H 0.26 deleterious(0) probably_damaging(0.999) TCGA-34-A5IX-01 12 53186953 53186953 C T KRT3 Silent p.L307L 0.43 TCGA-34-A5IX-01 12 65004390 65004390 C A RASSF3 5'UTR 0.40 TCGA-34-A5IX-01 12 71094972 71094972 C G PTPRR Missense_Mutation p.R380T 0.36 deleterious(0.01) possibly_damaging(0.461) TCGA-34-A5IX-01 12 82147848 82147848 C A PPFIA2 Missense_Mutation p.E51D 0.22 tolerated(0.08) probably_damaging(0.966) TCGA-34-A5IX-01 12 85492702 85492702 A T LRRIQ1 Missense_Mutation p.I1047F 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-34-A5IX-01 13 103295588 103295588 G T TPP2 Silent p.S679S 0.30 TCGA-34-A5IX-01 13 108862481 108862481 T C LIG4 Missense_Mutation p.H379R 0.50 tolerated(0.32) benign(0) TCGA-34-A5IX-01 13 111117751 111117751 G T COL4A2 Splice_Site p.X593_splice 0.07 TCGA-34-A5IX-01 13 111118349 111118349 G T COL4A2 Splice_Site p.X660_splice 0.07 TCGA-34-A5IX-01 13 21303159 21303159 C G N6AMT2 3'UTR 0.24 TCGA-34-A5IX-01 13 50205194 50205194 C A ARL11 3'UTR 0.30 TCGA-34-A5IX-01 13 95696619 95696619 A G ABCC4 Missense_Mutation p.F1177S 0.41 deleterious(0) possibly_damaging(0.497) TCGA-34-A5IX-01 14 103969633 103969633 A G MARK3 3'UTR 0.33 TCGA-34-A5IX-01 14 105414816 105414816 C A AHNAK2 Missense_Mutation p.K2324N 0.33 benign(0.01) TCGA-34-A5IX-01 14 47120762 47120762 G A RPL10L Silent p.L60L 0.33 TCGA-34-A5IX-01 14 53325120 53325120 T A FERMT2 Missense_Mutation p.Y680F 0.50 deleterious(0.02) benign(0.001) TCGA-34-A5IX-01 14 95999879 95999879 C A GLRX5 5'Flank 0.26 TCGA-34-A5IX-01 15 20169998 20169998 C T IGHV1OR15-9 Missense_Mutation p.D92N 0.14 deleterious(0.01) benign(0.38) TCGA-34-A5IX-01 15 25344728 25344728 G T SNORD116-26 RNA 0.12 TCGA-34-A5IX-01 15 25427560 25427560 A G SNORD115-6 3'Flank 0.14 TCGA-34-A5IX-01 15 30010875 30010875 G C TJP1 Missense_Mutation p.H1157Q 0.14 tolerated_low_confidence(0.07) benign(0.004) TCGA-34-A5IX-01 15 42470668 42470668 G A VPS39 Silent p.P273P 0.29 TCGA-34-A5IX-01 15 44085266 44085266 C T SERF2 Missense_Mutation p.A34V 0.11 deleterious_low_confidence(0.02) possibly_damaging(0.787) TCGA-34-A5IX-01 15 45270712 45270712 G A C15orf43 Silent p.K183K 0.36 TCGA-34-A5IX-01 15 56142857 56142857 C G NEDD4 Missense_Mutation p.Q757H 0.30 tolerated(0.14) benign(0.015) TCGA-34-A5IX-01 15 74964012 74964012 C T EDC3 Missense_Mutation p.G90S 0.26 tolerated(0.3) benign(0.006) TCGA-34-A5IX-01 15 85164457 85164457 G T ZSCAN2 Missense_Mutation p.G344V 0.33 tolerated(0.1) probably_damaging(0.999) TCGA-34-A5IX-01 15 90902093 90902093 C A ZNF774 Missense_Mutation p.P39T 0.26 deleterious(0.01) benign(0.005) TCGA-34-A5IX-01 15 98995185 98995185 G C FAM169B Missense_Mutation p.T80S 0.22 tolerated(0.08) probably_damaging(0.999) TCGA-34-A5IX-01 16 1143731 1143731 C G C1QTNF8 Missense_Mutation p.E177Q 0.09 deleterious(0.01) probably_damaging(0.95) TCGA-34-A5IX-01 16 2136757 2136757 T C TSC2 Missense_Mutation p.M1625T 0.32 deleterious(0) probably_damaging(0.995) TCGA-34-A5IX-01 16 23690628 23690628 C T PLK1 Silent p.F125F 0.28 TCGA-34-A5IX-01 16 28854120 28854120 C G TUFM 3'UTR 0.30 TCGA-34-A5IX-01 16 29706123 29706123 C A QPRT Missense_Mutation p.P51H 0.24 deleterious(0.04) probably_damaging(0.981) TCGA-34-A5IX-01 16 347978 347978 C A AXIN1 Missense_Mutation p.A510S 0.26 tolerated(0.73) benign(0.008) TCGA-34-A5IX-01 16 3640634 3640634 C A SLX4 Missense_Mutation p.S1002I 0.19 tolerated(0.12) benign(0.017) TCGA-34-A5IX-01 16 51172821 51172829 GGGGGTGTC - SALL1 In_Frame_Del p.D1102_P1104del 0.13 TCGA-34-A5IX-01 16 57951210 57951227 GGAACACGGTGATGTCCA - CNGB1 In_Frame_Del p.L704_F709del 0.35 TCGA-34-A5IX-01 16 70553586 70553586 T C COG4 Missense_Mutation p.I74V 0.21 tolerated(0.34) benign(0.001) TCGA-34-A5IX-01 16 747179 747179 G T FBXL16 Missense_Mutation p.P76Q 0.22 tolerated(0.18) benign(0.085) TCGA-34-A5IX-01 16 9010913 9010913 A G USP7 Missense_Mutation p.V274A 0.23 deleterious(0) probably_damaging(1) TCGA-34-A5IX-01 17 34072094 34072094 T G GAS2L2 Silent p.R808R 0.28 TCGA-34-A5IX-01 17 34871772 34871772 C A MYO19 Missense_Mutation p.W159L 0.33 tolerated(0.66) benign(0.01) TCGA-34-A5IX-01 17 37944588 37944588 T C IKZF3 Missense_Mutation p.Y211C 0.39 tolerated(0.06) probably_damaging(1) TCGA-34-A5IX-01 17 46629841 46629841 G T HOXB3 5'UTR 0.36 TCGA-34-A5IX-01 17 56349166 56349166 G A MPO Missense_Mutation p.A627V 0.26 deleterious(0.02) probably_damaging(0.991) TCGA-34-A5IX-01 17 70645044 70645044 G A SLC39A11 Missense_Mutation p.A283V 0.09 deleterious(0.02) possibly_damaging(0.517) TCGA-34-A5IX-01 17 72540897 72540897 A T CD300C Missense_Mutation p.I84N 0.38 deleterious(0) probably_damaging(1) TCGA-34-A5IX-01 17 7578454 7578454 G A TP53 Missense_Mutation p.A159V 0.32 deleterious(0) possibly_damaging(0.9) TCGA-34-A5IX-01 18 28712647 28712647 G C DSC1 Missense_Mutation p.L708V 0.43 deleterious(0.02) benign(0.12) TCGA-34-A5IX-01 18 31326398 31326398 C T ASXL3 Missense_Mutation p.P2196S 0.25 probably_damaging(1) TCGA-34-A5IX-01 18 67508650 67508650 C T DOK6 3'UTR 0.35 TCGA-34-A5IX-01 18 74728948 74728948 C A MBP Missense_Mutation p.R139I 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-34-A5IX-01 19 11486730 11486730 C A SWSAP1 3'UTR 0.27 TCGA-34-A5IX-01 19 13007749 13007749 C T GCDH Missense_Mutation p.A293V 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-34-A5IX-01 19 14774243 14774243 C T EMR3 Silent p.L62L 0.25 TCGA-34-A5IX-01 19 15566958 15566958 T A RASAL3 Missense_Mutation p.N560Y 0.34 deleterious(0.02) possibly_damaging(0.49) TCGA-34-A5IX-01 19 15917882 15917882 G A OR10H1 3'UTR 0.10 TCGA-34-A5IX-01 19 17937410 17937410 C - JAK3 3'UTR 0.35 TCGA-34-A5IX-01 19 18304840 18304840 C T MPV17L2 Silent p.F118F 0.12 TCGA-34-A5IX-01 19 18391816 18391832 GCAGCGGCCGCGCCCGC - JUND Frame_Shift_Del p.A155Rfs*263 0.47 TCGA-34-A5IX-01 19 22155760 22155760 G T ZNF208 Silent p.P692P 0.21 TCGA-34-A5IX-01 19 23927573 23927573 C A ZNF681 Missense_Mutation p.S260I 0.17 deleterious(0) unknown(0) TCGA-34-A5IX-01 19 3785277 3785277 C T MATK Intron 0.36 TCGA-34-A5IX-01 19 37853720 37853720 G T HKR1 Missense_Mutation p.K341N 0.26 deleterious(0.01) possibly_damaging(0.621) TCGA-34-A5IX-01 19 39191265 39191265 A T ACTN4 Missense_Mutation p.H63L 0.28 deleterious(0) probably_damaging(0.973) TCGA-34-A5IX-01 19 3976611 3976611 T A EEF2 Nonsense_Mutation p.K840* 0.24 TCGA-34-A5IX-01 19 39907208 39907208 C G PLEKHG2 Missense_Mutation p.I188M 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-34-A5IX-01 19 40902689 40902689 T C PRX Missense_Mutation p.K524E 0.18 tolerated(0.28) possibly_damaging(0.486) TCGA-34-A5IX-01 19 41455120 41455120 T A AC092071.1 3'Flank 0.28 TCGA-34-A5IX-01 19 47423995 47423995 G - ARHGAP35 Frame_Shift_Del p.R689Gfs*5 0.17 TCGA-34-A5IX-01 19 49398339 49398339 C A TULP2 Missense_Mutation p.V144L 0.24 tolerated(0.23) benign(0.022) TCGA-34-A5IX-01 19 50339588 50339588 T A MED25 Missense_Mutation p.L691M 0.19 deleterious_low_confidence(0.02) probably_damaging(0.961) TCGA-34-A5IX-01 19 51362859 51362859 G A KLK3 Intron 0.26 TCGA-34-A5IX-01 19 52034575 52034575 G A SIGLEC6 Missense_Mutation p.T89I 0.18 deleterious(0.02) probably_damaging(0.988) TCGA-34-A5IX-01 19 54201667 54201667 C T MIR523 RNA 0.27 TCGA-34-A5IX-01 19 54872581 54872581 G C LAIR1 Missense_Mutation p.I102M 0.21 tolerated(0.05) benign(0.058) TCGA-34-A5IX-01 19 55385722 55385722 C T FCAR 5'Flank 0.17 TCGA-34-A5IX-01 19 56180119 56180119 C T U2AF2 Silent p.Y302Y 0.28 TCGA-34-A5IX-01 19 56243962 56243962 T A NLRP9 Missense_Mutation p.H412L 0.23 tolerated(0.73) benign(0.013) TCGA-34-A5IX-01 19 56243963 56243963 G T NLRP9 Missense_Mutation p.H412N 0.24 tolerated(0.43) benign(0.03) TCGA-34-A5IX-01 19 56393030 56393030 C A NLRP4 3'UTR 0.22 TCGA-34-A5IX-01 19 57326440 57326440 C A PEG3 Missense_Mutation p.D1124Y 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-34-A5IX-01 19 57803073 57803073 A C ZNF460 Silent p.G388G 0.31 TCGA-34-A5IX-01 19 57868641 57868641 T G ZNF304 Missense_Mutation p.I468M 0.26 deleterious(0) probably_damaging(0.975) TCGA-34-A5IX-01 19 58439216 58439216 C G ZNF418 Missense_Mutation p.R111S 0.26 tolerated(0.38) benign(0.017) TCGA-34-A5IX-01 19 58563913 58563913 G A ZSCAN1 Missense_Mutation p.S174N 0.14 tolerated(0.42) benign(0.042) TCGA-34-A5IX-01 1 111215562 111215562 G A KCNA3 3'UTR 0.57 TCGA-34-A5IX-01 1 11576215 11576215 C A PTCHD2 Silent p.S582S 0.22 TCGA-34-A5IX-01 1 120466387 120466387 G A NOTCH2 Missense_Mutation p.R1578C 0.18 tolerated(0.13) probably_damaging(1) TCGA-34-A5IX-01 1 12943057 12943057 G A PRAMEF4 Silent p.A53A 0.38 TCGA-34-A5IX-01 1 151491681 151491681 G T CGN Missense_Mutation p.R229L 0.21 tolerated(0.43) benign(0.003) TCGA-34-A5IX-01 1 155532024 155532024 C G ASH1L 5'UTR 0.29 TCGA-34-A5IX-01 1 1564583 1564583 T C MIB2 Missense_Mutation p.L873P 0.21 tolerated(0.28) possibly_damaging(0.851) TCGA-34-A5IX-01 1 156848983 156848983 G A NTRK1 Silent p.G625G 0.27 TCGA-34-A5IX-01 1 157667126 157667126 A G FCRL3 Silent p.S216S 0.20 TCGA-34-A5IX-01 1 158436024 158436024 A G OR10K1 Missense_Mutation p.I225V 0.26 deleterious(0.05) benign(0.075) TCGA-34-A5IX-01 1 158608019 158608019 C - SPTA1 Frame_Shift_Del p.D1665Tfs*2 0.24 TCGA-34-A5IX-01 1 158619672 158619672 A - SPTA1 Frame_Shift_Del p.S1181Rfs*59 0.21 TCGA-34-A5IX-01 1 1599800 1599800 C T SLC35E2B Missense_Mutation p.A316T 0.17 tolerated(0.08) possibly_damaging(0.907) TCGA-34-A5IX-01 1 161044540 161044540 C T PVRL4 Silent p.G287G 0.26 TCGA-34-A5IX-01 1 161196292 161196292 T C TOMM40L Silent p.L5L 0.25 TCGA-34-A5IX-01 1 164776861 164776861 A G PBX1 Missense_Mutation p.S262G 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-34-A5IX-01 1 167097335 167097335 C A DUSP27 Missense_Mutation p.D989E 0.25 deleterious(0.02) possibly_damaging(0.81) TCGA-34-A5IX-01 1 169356393 169356393 C T BLZF1 Silent p.H392H 0.24 TCGA-34-A5IX-01 1 173883967 173883967 C A SERPINC1 Silent p.P44P 0.31 TCGA-34-A5IX-01 1 175372583 175372583 G A TNR Silent p.S223S 0.27 TCGA-34-A5IX-01 1 177133781 177133781 G T ASTN1 Missense_Mutation p.A11D 0.35 tolerated_low_confidence(0.06) unknown(0) TCGA-34-A5IX-01 1 182555939 182555939 C A RNASEL Translation_Start_Site p.M1? 0.23 deleterious(0) benign(0.315) TCGA-34-A5IX-01 1 197398581 197398581 C T CRB1 Silent p.S893S 0.05 TCGA-34-A5IX-01 1 201778333 201778333 G C NAV1 Missense_Mutation p.E1417Q 0.27 deleterious(0.04) possibly_damaging(0.557) TCGA-34-A5IX-01 1 206822101 206822101 C T DYRK3 Missense_Mutation p.P520S 0.25 tolerated(0.09) probably_damaging(0.996) TCGA-34-A5IX-01 1 207669709 207669709 C A CR1 Missense_Mutation p.L33M 0.25 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-34-A5IX-01 1 21176024 21176024 C T EIF4G3 Splice_Site p.X1208_splice 0.25 TCGA-34-A5IX-01 1 215916609 215916609 C G USH2A Missense_Mutation p.A3820P 0.26 benign(0.317) TCGA-34-A5IX-01 1 216243458 216243458 T C USH2A Missense_Mutation p.T2012A 0.28 benign(0.012) TCGA-34-A5IX-01 1 216595468 216595468 C G USH2A Missense_Mutation p.A71P 0.26 benign(0.397) TCGA-34-A5IX-01 1 220320890 220320890 A G IARS2 Silent p.K984K 0.20 TCGA-34-A5IX-01 1 223987721 223987721 C A TP53BP2 Missense_Mutation p.E455D 0.32 tolerated(0.31) probably_damaging(0.99) TCGA-34-A5IX-01 1 237620026 237620026 G C RYR2 Missense_Mutation p.E535Q 0.21 benign(0.029) TCGA-34-A5IX-01 1 238090453 238090453 C T RP11-193H5.1 RNA 0.20 TCGA-34-A5IX-01 1 247587436 247587436 G A NLRP3 Missense_Mutation p.G231R 0.25 deleterious(0) probably_damaging(1) TCGA-34-A5IX-01 1 248569901 248569901 C G OR2T1 Silent p.G202G 0.24 TCGA-34-A5IX-01 1 35320808 35320808 G A SMIM12 3'UTR 0.27 TCGA-34-A5IX-01 1 36766499 36766499 A G THRAP3 Silent p.R772R 0.23 TCGA-34-A5IX-01 1 46663503 46663503 G C POMGNT1 5'UTR 0.22 TCGA-34-A5IX-01 1 50884538 50884538 G T DMRTA2 Missense_Mutation p.H476Q 0.29 deleterious_low_confidence(0.02) unknown(0) TCGA-34-A5IX-01 1 52940802 52940802 G T ZCCHC11 Missense_Mutation p.P810Q 0.23 tolerated(1) benign(0.012) TCGA-34-A5IX-01 1 55085541 55085541 C T FAM151A Silent p.L86L 0.18 TCGA-34-A5IX-01 1 75036982 75036982 G T C1orf173 Missense_Mutation p.A1471D 0.22 deleterious(0) possibly_damaging(0.663) TCGA-34-A5IX-01 1 75622600 75622600 C G LHX8 Missense_Mutation p.A278G 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-34-A5IX-01 1 77620175 77620175 C A PIGK Missense_Mutation p.E315D 0.25 tolerated(0.44) benign(0.003) TCGA-34-A5IX-01 1 77752679 77752679 G C AK5 Missense_Mutation p.L38F 0.22 deleterious(0) probably_damaging(0.993) TCGA-34-A5IX-01 1 92944286 92944286 A T GFI1 Missense_Mutation p.C317S 0.24 deleterious(0) probably_damaging(0.998) TCGA-34-A5IX-01 1 93580245 93580245 G A MTF2 Missense_Mutation p.G96E 0.31 deleterious(0.01) benign(0.04) TCGA-34-A5IX-01 20 18163771 18163771 G A CSRP2BP Missense_Mutation p.D605N 0.18 deleterious(0) possibly_damaging(0.764) TCGA-34-A5IX-01 20 1961013 1961013 G C PDYN Missense_Mutation p.Q241E 0.27 tolerated(0.47) benign(0.005) TCGA-34-A5IX-01 20 21142920 21142920 G C RP4-777D9.2 Intron 0.26 TCGA-34-A5IX-01 20 21376589 21376589 C A NKX2-4 Missense_Mutation p.G342V 0.41 tolerated(0.13) probably_damaging(0.953) TCGA-34-A5IX-01 20 21376590 21376590 C A NKX2-4 Missense_Mutation p.G342C 0.42 deleterious(0.02) probably_damaging(0.981) TCGA-34-A5IX-01 20 34328745 34328745 C A RBM39 Splice_Site p.X17_splice 0.25 TCGA-34-A5IX-01 20 37005373 37005373 C A LBP 3'UTR 0.27 TCGA-34-A5IX-01 20 42979345 42979345 C A R3HDML Nonsense_Mutation p.C225* 0.27 TCGA-34-A5IX-01 20 57570815 57570815 C T CTSZ Splice_Site p.X268_splice 0.09 TCGA-34-A5IX-01 20 60791845 60791845 C T HRH3 Silent p.E185E 0.22 TCGA-34-A5IX-01 21 10998337 10998337 T C TPTE Splice_Site 0.10 TCGA-34-A5IX-01 21 11014944 11014944 C A TPTE RNA 0.09 TCGA-34-A5IX-01 21 27062193 27062193 G A JAM2 Missense_Mutation p.C50Y 0.10 deleterious(0) probably_damaging(1) TCGA-34-A5IX-01 21 30925880 30925880 A T GRIK1 Missense_Mutation p.V918E 0.14 deleterious_low_confidence(0) benign(0.403) TCGA-34-A5IX-01 21 33032050 33032050 C G SOD1 5'UTR 0.20 TCGA-34-A5IX-01 21 34399354 34399354 G A OLIG2 Missense_Mutation p.A62T 0.11 deleterious(0.01) benign(0.167) TCGA-34-A5IX-01 21 42821218 42821218 G C MX1 Silent p.V476V 0.29 TCGA-34-A5IX-01 22 17488851 17488851 C G GAB4 Missense_Mutation p.E52Q 0.26 deleterious(0) possibly_damaging(0.832) TCGA-34-A5IX-01 22 32587018 32587018 G T RFPL2 Missense_Mutation p.P293Q 0.19 deleterious(0) probably_damaging(1) TCGA-34-A5IX-01 22 36960405 36960405 G T CACNG2 Missense_Mutation p.P322H 0.28 deleterious(0) probably_damaging(0.994) TCGA-34-A5IX-01 22 39077955 39077955 C G TOMM22 5'UTR 0.16 TCGA-34-A5IX-01 22 41215222 41215222 C A SLC25A17 Missense_Mutation p.V11F 0.17 deleterious(0) possibly_damaging(0.809) TCGA-34-A5IX-01 22 50955905 50955905 G T NCAPH2 Missense_Mutation p.G87V 0.22 deleterious(0) possibly_damaging(0.905) TCGA-34-A5IX-01 2 102792877 102792877 A G IL1R1 Silent p.R456R 0.19 TCGA-34-A5IX-01 2 103317634 103317634 C T SLC9A2 Silent p.A564A 0.21 TCGA-34-A5IX-01 2 122227530 122227530 T - CLASP1 Frame_Shift_Del p.N240Ifs*72 0.19 TCGA-34-A5IX-01 2 125262121 125262121 G T CNTNAP5 Nonsense_Mutation p.E438* 0.22 TCGA-34-A5IX-01 2 141356392 141356392 C G LRP1B Missense_Mutation p.W2334C 0.22 probably_damaging(0.926) TCGA-34-A5IX-01 2 143798082 143798082 A G KYNU Missense_Mutation p.Y376C 0.22 tolerated(0.08) benign(0.015) TCGA-34-A5IX-01 2 158287476 158287476 T C CYTIP Splice_Site p.X94_splice 0.18 TCGA-34-A5IX-01 2 163000557 163000557 A T GCG Silent p.I172I 0.29 TCGA-34-A5IX-01 2 175330517 175330517 C T GPR155 Nonsense_Mutation p.W460* 0.25 TCGA-34-A5IX-01 2 179393640 179393640 G C TTN Missense_Mutation p.S35613C 0.33 TCGA-34-A5IX-01 2 179473559 179473559 G T TTN Silent p.P17393P 0.27 TCGA-34-A5IX-01 2 179489259 179489259 T C TTN Silent p.P14916P 0.12 TCGA-34-A5IX-01 2 189871103 189871103 C A COL3A1 Silent p.A1042A 0.13 TCGA-34-A5IX-01 2 192711393 192711393 C A SDPR Nonsense_Mutation p.E87* 0.22 TCGA-34-A5IX-01 2 196682528 196682528 G T DNAH7 Missense_Mutation p.T3106N 0.31 deleterious(0) probably_damaging(0.999) TCGA-34-A5IX-01 2 202626164 202626164 T A ALS2 Missense_Mutation p.T185S 0.21 tolerated(0.33) benign(0.019) TCGA-34-A5IX-01 2 216964845 216964845 C A TMEM169 Silent p.P158P 0.31 TCGA-34-A5IX-01 2 216964846 216964846 C A TMEM169 Missense_Mutation p.H159N 0.32 deleterious(0) probably_damaging(0.917) TCGA-34-A5IX-01 2 218713676 218713676 C G TNS1 Missense_Mutation p.E397Q 0.26 deleterious(0.01) possibly_damaging(0.609) TCGA-34-A5IX-01 2 219486323 219486323 G A PLCD4 Splice_Site p.X180_splice 0.23 TCGA-34-A5IX-01 2 219529581 219529581 T A RNF25 Missense_Mutation p.S228C 0.26 deleterious(0) possibly_damaging(0.695) TCGA-34-A5IX-01 2 241710465 241710465 G A KIF1A Missense_Mutation p.R422C 0.35 deleterious(0.04) probably_damaging(0.992) TCGA-34-A5IX-01 2 26414082 26414082 G T HADHA 3'UTR 0.33 TCGA-34-A5IX-01 2 31483675 31483675 C T EHD3 Missense_Mutation p.R268W 0.27 deleterious(0) possibly_damaging(0.775) TCGA-34-A5IX-01 2 38893470 38893470 T C GALM Missense_Mutation p.V56A 0.23 tolerated(0.08) probably_damaging(0.974) TCGA-34-A5IX-01 2 44586847 44586847 T C PREPL Missense_Mutation p.Q3R 0.22 tolerated_low_confidence(0.32) benign(0.002) TCGA-34-A5IX-01 2 61622350 61622350 T G USP34 Missense_Mutation p.S191R 0.27 tolerated(0.26) benign(0.367) TCGA-34-A5IX-01 2 68544320 68544320 C G CNRIP1 Missense_Mutation p.G100A 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-34-A5IX-01 2 71796964 71796964 T A DYSF Missense_Mutation p.M960K 0.28 tolerated(0.3) benign(0) TCGA-34-A5IX-01 2 74041194 74041194 G T C2orf78 Missense_Mutation p.G230C 0.27 deleterious(0.01) possibly_damaging(0.554) TCGA-34-A5IX-01 2 74699851 74699851 G A MRPL53 5'UTR 0.09 TCGA-34-A5IX-01 2 88422621 88422621 G T FABP1 Silent p.T112T 0.17 TCGA-34-A5IX-01 2 90139159 90139159 G - IGKV1D-16 Frame_Shift_Del 0.11 TCGA-34-A5IX-01 2 9531236 9531236 T C ASAP2 Missense_Mutation p.V810A 0.33 tolerated(0.53) benign(0.063) TCGA-34-A5IX-01 2 96961261 96961261 G A SNRNP200 Missense_Mutation p.R603C 0.22 deleterious(0.01) probably_damaging(0.988) TCGA-34-A5IX-01 3 107491472 107491472 T C BBX Intron 0.15 TCGA-34-A5IX-01 3 108746671 108746671 T A MORC1 Missense_Mutation p.K544I 0.16 deleterious(0.02) benign(0.408) TCGA-34-A5IX-01 3 118866345 118866345 C A C3orf30 Missense_Mutation p.Q437K 0.37 tolerated(0.09) possibly_damaging(0.828) TCGA-34-A5IX-01 3 118906820 118906820 G C UPK1B Missense_Mutation p.A90P 0.42 tolerated(0.14) possibly_damaging(0.507) TCGA-34-A5IX-01 3 121647928 121647928 G T SLC15A2 Missense_Mutation p.V481L 0.10 tolerated(0.72) benign(0.004) TCGA-34-A5IX-01 3 123419706 123419706 C G MYLK Missense_Mutation p.R870P 0.11 deleterious(0) benign(0.076) TCGA-34-A5IX-01 3 128810029 128810029 C - RAB43 Frame_Shift_Del p.H184Tfs*16 0.23 TCGA-34-A5IX-01 3 147128689 147128689 C A ZIC1 Missense_Mutation p.P264T 0.13 deleterious(0) probably_damaging(0.962) TCGA-34-A5IX-01 3 148575314 148575314 G A CPB1 Missense_Mutation p.G351E 0.34 deleterious(0.04) probably_damaging(0.998) TCGA-34-A5IX-01 3 148586756 148586756 G C CPA3 Missense_Mutation p.D67H 0.51 tolerated(0.13) probably_damaging(1) TCGA-34-A5IX-01 3 154884730 154884730 C A MME Missense_Mutation p.A567D 0.41 tolerated(0.07) benign(0.371) TCGA-34-A5IX-01 3 164697125 164697125 T G SI 3'UTR 0.26 TCGA-34-A5IX-01 3 173997430 173997430 G T NLGN1 Missense_Mutation p.A547S 0.11 deleterious(0.03) probably_damaging(0.987) TCGA-34-A5IX-01 3 179426694 179426694 A G USP13 Missense_Mutation p.M252V 0.55 tolerated(0.07) benign(0.039) TCGA-34-A5IX-01 3 39185097 39185097 C A CSRNP1 Nonsense_Mutation p.E407* 0.33 TCGA-34-A5IX-01 3 46401226 46401226 G T CCR2 Missense_Mutation p.G334C 0.24 tolerated(0.18) possibly_damaging(0.49) TCGA-34-A5IX-01 3 46401227 46401227 G T CCR2 Missense_Mutation p.G334V 0.26 tolerated(0.52) benign(0.001) TCGA-34-A5IX-01 3 49569045 49569045 G A DAG1 Silent p.T367T 0.25 TCGA-34-A5IX-01 3 52558434 52558434 G C STAB1 3'UTR 0.32 TCGA-34-A5IX-01 3 74350621 74350621 C G CNTN3 Missense_Mutation p.V675L 0.30 deleterious(0) benign(0.253) TCGA-34-A5IX-01 3 9932449 9932449 A G JAGN1 Missense_Mutation p.S15G 0.25 deleterious(0.04) possibly_damaging(0.809) TCGA-34-A5IX-01 4 1019044 1019044 A G FGFRL1 Missense_Mutation p.Y475C 0.40 deleterious(0) probably_damaging(0.971) TCGA-34-A5IX-01 4 115858576 115858576 T C NDST4 Silent p.A435A 0.17 TCGA-34-A5IX-01 4 122776705 122776705 C T BBS7 Silent p.V180V 0.18 TCGA-34-A5IX-01 4 124323210 124323210 G T SPRY1 Missense_Mutation p.R155L 0.30 deleterious(0.04) benign(0.129) TCGA-34-A5IX-01 4 155720418 155720418 C A RBM46 Nonsense_Mutation p.C368* 0.33 TCGA-34-A5IX-01 4 16504154 16504154 T A LDB2 3'UTR 0.09 TCGA-34-A5IX-01 4 17516927 17516927 C A CLRN2 Missense_Mutation p.A13E 0.28 deleterious(0) probably_damaging(0.998) TCGA-34-A5IX-01 4 2701979 2701979 C T FAM193A Silent p.A1069A 0.09 TCGA-34-A5IX-01 4 48027179 48027179 G C NIPAL1 Silent p.T47T 0.27 TCGA-34-A5IX-01 4 62598791 62598791 G T LPHN3 Missense_Mutation p.K238N 0.12 deleterious(0) probably_damaging(0.999) TCGA-34-A5IX-01 4 62849163 62849163 G A LPHN3 Missense_Mutation p.M958I 0.10 deleterious(0.01) possibly_damaging(0.855) TCGA-34-A5IX-01 4 69094553 69094553 G C TMPRSS11B Missense_Mutation p.N332K 0.13 deleterious(0.04) benign(0.034) TCGA-34-A5IX-01 4 73956708 73956708 T C ANKRD17 Missense_Mutation p.S2213G 0.32 benign(0.031) TCGA-34-A5IX-01 4 84511352 84511352 G T AGPAT9 Missense_Mutation p.K215N 0.08 deleterious(0.03) benign(0.009) TCGA-34-A5IX-01 4 87028418 87028418 C A MAPK10 Silent p.A108A 0.26 TCGA-34-A5IX-01 4 88583130 88583130 G T DMP1 Missense_Mutation p.S67I 0.08 deleterious(0.01) possibly_damaging(0.827) TCGA-34-A5IX-01 4 88766255 88766255 G T MEPE Nonsense_Mutation p.E79* 0.15 TCGA-34-A5IX-01 4 88767651 88767651 G T MEPE 3'UTR 0.09 TCGA-34-A5IX-01 4 90170030 90170030 G A GPRIN3 Missense_Mutation p.A411V 0.23 tolerated(0.62) benign(0) TCGA-34-A5IX-01 4 90816125 90816125 G A MMRN1 Translation_Start_Site p.M1? 0.27 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-34-A5IX-01 5 137089589 137089589 G T HNRNPA0 Missense_Mutation p.S56Y 0.27 deleterious(0) probably_damaging(0.987) TCGA-34-A5IX-01 5 140431964 140431964 A G PCDHB1 Silent p.L303L 0.14 TCGA-34-A5IX-01 5 140537796 140537796 G T PCDHB17 3'UTR 0.34 TCGA-34-A5IX-01 5 140558070 140558070 C A PCDHB8 Missense_Mutation p.A152E 0.38 tolerated_low_confidence(0.14) benign(0.002) TCGA-34-A5IX-01 5 140588909 140588909 G A PCDHB12 Missense_Mutation p.E144K 0.04 deleterious_low_confidence(0) probably_damaging(1) TCGA-34-A5IX-01 5 140590105 140590105 C G PCDHB12 Missense_Mutation p.S542R 0.32 deleterious_low_confidence(0.01) probably_damaging(0.964) TCGA-34-A5IX-01 5 140744334 140744334 C T PCDHGA5 Missense_Mutation p.A146V 0.10 tolerated_low_confidence(0.1) possibly_damaging(0.625) TCGA-34-A5IX-01 5 172513521 172513521 G C CREBRF Missense_Mutation p.M9I 0.29 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-34-A5IX-01 5 175306905 175306905 C A CPLX2 Missense_Mutation p.Q88K 0.19 tolerated(0.68) benign(0.038) TCGA-34-A5IX-01 5 176314102 176314102 G T HK3 Missense_Mutation p.D586E 0.24 tolerated(0.92) benign(0.082) TCGA-34-A5IX-01 5 176940053 176940053 T C DDX41 Missense_Mutation p.M421V 0.28 tolerated(0.29) benign(0.004) TCGA-34-A5IX-01 5 180582291 180582291 G C OR2V2 Missense_Mutation p.G117R 0.21 deleterious(0) probably_damaging(0.925) TCGA-34-A5IX-01 5 180622064 180622064 C T TRIM7 3'UTR 0.23 TCGA-34-A5IX-01 5 21755756 21755756 A G CDH12 Missense_Mutation p.V610A 0.32 tolerated(1) benign(0.005) TCGA-34-A5IX-01 5 26885814 26885814 C A CDH9 Missense_Mutation p.M597I 0.30 tolerated(1) benign(0.004) TCGA-34-A5IX-01 5 32053909 32053909 G C PDZD2 Missense_Mutation p.C607S 0.14 tolerated(0.9) probably_damaging(0.994) TCGA-34-A5IX-01 5 33561169 33561169 C A ADAMTS12 Missense_Mutation p.R1363L 0.23 deleterious(0) probably_damaging(0.995) TCGA-34-A5IX-01 5 42719206 42719206 G A GHR Missense_Mutation p.A533T 0.25 tolerated(0.13) benign(0.042) TCGA-34-A5IX-01 5 63257424 63257424 C T HTR1A Silent p.L41L 0.31 TCGA-34-A5IX-01 5 68716295 68716299 TTGCC - MARVELD2 Frame_Shift_Del p.C362Kfs*6 0.21 TCGA-34-A5IX-01 6 102307216 102307216 C T GRIK2 Nonsense_Mutation p.R458* 0.15 TCGA-34-A5IX-01 6 111694686 111694686 A T REV3L Missense_Mutation p.F1624L 0.26 tolerated(0.43) benign(0.075) TCGA-34-A5IX-01 6 112015704 112015704 G A FYN Missense_Mutation p.R383C 0.27 deleterious(0) probably_damaging(0.999) TCGA-34-A5IX-01 6 154751646 154751646 T C CNKSR3 Missense_Mutation p.E210G 0.23 deleterious(0) possibly_damaging(0.697) TCGA-34-A5IX-01 6 15501158 15501158 G T JARID2 Missense_Mutation p.A656S 0.30 tolerated(0.35) benign(0.186) TCGA-34-A5IX-01 6 159653361 159653361 C T FNDC1 Missense_Mutation p.T606M 0.35 deleterious_low_confidence(0) unknown(0) TCGA-34-A5IX-01 6 160553357 160553357 G A SLC22A1 Silent p.L203L 0.14 TCGA-34-A5IX-01 6 168440827 168440827 G A KIF25 Missense_Mutation p.A193T 0.11 tolerated(0.07) possibly_damaging(0.903) TCGA-34-A5IX-01 6 26251947 26251947 G A HIST1H2BH Silent p.Q23Q 0.18 TCGA-34-A5IX-01 6 26509102 26509102 C G BTN1A1 Missense_Mutation p.D427E 0.09 deleterious(0) probably_damaging(0.988) TCGA-34-A5IX-01 6 31133715 31133715 C G POU5F1 Missense_Mutation p.G172A 0.12 deleterious(0) possibly_damaging(0.683) TCGA-34-A5IX-01 6 31593070 31593070 G T PRRC2A Nonsense_Mutation p.G196* 0.17 TCGA-34-A5IX-01 6 31946734 31946734 G C STK19 Missense_Mutation p.D208H 0.18 deleterious(0) probably_damaging(0.996) TCGA-34-A5IX-01 6 32159625 32159625 A T GPSM3 Missense_Mutation p.V69E 0.29 deleterious(0) probably_damaging(0.988) TCGA-34-A5IX-01 6 32166822 32166822 C T NOTCH4 Silent p.R1472R 0.18 TCGA-34-A5IX-01 6 32942455 32942455 A G BRD2 Silent p.L82L 0.33 TCGA-34-A5IX-01 6 35773838 35773838 G A LHFPL5 Missense_Mutation p.A131T 0.17 deleterious(0) probably_damaging(1) TCGA-34-A5IX-01 6 47649408 47649408 C A GPR111 Silent p.P371P 0.23 TCGA-34-A5IX-01 6 51799065 51799065 G A PKHD1 Silent p.I1988I 0.31 TCGA-34-A5IX-01 6 57012866 57012866 T A ZNF451 Missense_Mutation p.N661K 0.12 tolerated(0.37) benign(0.211) TCGA-34-A5IX-01 6 71569985 71569985 G A SMAP1 Missense_Mutation p.G451E 0.13 deleterious(0) unknown(0) TCGA-34-A5IX-01 6 75843616 75843616 G C COL12A1 Nonsense_Mutation p.Y1874* 0.22 TCGA-34-A5IX-01 6 90434961 90434961 C A MDN1 Missense_Mutation p.G1876V 0.20 probably_damaging(0.998) TCGA-34-A5IX-01 7 102985118 102985118 G A DNAJC2 5'UTR 0.23 TCGA-34-A5IX-01 7 105135590 105135590 T G PUS7 Silent p.R281R 0.24 TCGA-34-A5IX-01 7 141954918 141954918 G A PRSS58 Silent p.T131T 0.24 TCGA-34-A5IX-01 7 141954919 141954919 G T PRSS58 Missense_Mutation p.T131N 0.24 deleterious(0) benign(0.412) TCGA-34-A5IX-01 7 142028484 142028484 C A TRBV6-1 Missense_Mutation p.T73N 0.18 tolerated(0.63) benign(0.005) TCGA-34-A5IX-01 7 150416165 150416165 A T GIMAP1 Missense_Mutation p.E10D 0.37 deleterious(0.05) possibly_damaging(0.891) TCGA-34-A5IX-01 7 39379328 39379328 C T POU6F2 Missense_Mutation p.S200L 0.44 tolerated_low_confidence(0.4) unknown(0) TCGA-34-A5IX-01 7 44800094 44800094 G T ZMIZ2 Missense_Mutation p.S381I 0.03 deleterious(0) possibly_damaging(0.498) TCGA-34-A5IX-01 7 48550700 48550700 C A ABCA13 Silent p.V4515V 0.33 TCGA-34-A5IX-01 7 53103418 53103418 G - POM121L12 Frame_Shift_Del p.G19Efs*15 0.18 TCGA-34-A5IX-01 7 5401579 5401579 T A TNRC18 Missense_Mutation p.Y1494F 0.37 probably_damaging(0.967) TCGA-34-A5IX-01 7 55914299 55914299 G T SEPT14 Missense_Mutation p.T29K 0.31 deleterious(0) benign(0.324) TCGA-34-A5IX-01 7 57187881 57187881 C T ZNF479 Missense_Mutation p.C414Y 0.17 deleterious(0.02) probably_damaging(0.997) TCGA-34-A5IX-01 7 6078200 6078200 C T EIF2AK1 Missense_Mutation p.E408K 0.31 tolerated(0.28) benign(0.305) TCGA-34-A5IX-01 7 75616727 75616727 G A POR 3'Flank 0.44 TCGA-34-A5IX-01 7 7612109 7612109 G T MIOS Translation_Start_Site p.M1? 0.33 deleterious(0) probably_damaging(0.995) TCGA-34-A5IX-01 7 84651832 84651832 G A SEMA3D Missense_Mutation p.S430F 0.21 deleterious(0) possibly_damaging(0.789) TCGA-34-A5IX-01 7 86493647 86493647 C A GRM3 Silent p.L872L 0.19 TCGA-34-A5IX-01 7 87179800 87179800 G C ABCB1 Missense_Mutation p.S403C 0.30 deleterious(0) benign(0.101) TCGA-34-A5IX-01 7 98478779 98478779 G T TRRAP Silent p.A2A 0.25 TCGA-34-A5IX-01 7 99473974 99473974 C A OR2AE1 Missense_Mutation p.R228L 0.37 tolerated(0.1) possibly_damaging(0.495) TCGA-34-A5IX-01 8 10468469 10468469 C A RP1L1 Missense_Mutation p.A1047S 0.29 benign(0.016) TCGA-34-A5IX-01 8 110100276 110100276 T A TRHR Missense_Mutation p.C179S 0.59 deleterious(0) probably_damaging(1) TCGA-34-A5IX-01 8 113392655 113392655 G A CSMD3 Missense_Mutation p.T2021M 0.60 deleterious(0) probably_damaging(0.993) TCGA-34-A5IX-01 8 133909976 133909976 G T TG Missense_Mutation p.M1028I 0.57 tolerated(0.82) benign(0.002) TCGA-34-A5IX-01 8 134203436 134203436 G T WISP1 Missense_Mutation p.A17S 0.76 tolerated(0.4) benign(0.042) TCGA-34-A5IX-01 8 140715168 140715168 G T KCNK9 Missense_Mutation p.A23D 0.48 deleterious(0) probably_damaging(0.997) TCGA-34-A5IX-01 8 144659497 144659497 C A NAPRT1 Silent p.L170L 0.59 TCGA-34-A5IX-01 8 144804438 144804438 C T MAPK15 3'UTR 0.25 TCGA-34-A5IX-01 8 1728432 1728432 C T CLN8 Missense_Mutation p.S187F 0.10 deleterious(0) possibly_damaging(0.657) TCGA-34-A5IX-01 8 17613199 17613199 A G MTUS1 Missense_Mutation p.S40P 0.24 tolerated(0.07) benign(0.02) TCGA-34-A5IX-01 8 19362778 19362778 T C CSGALNACT1 Missense_Mutation p.T190A 0.22 tolerated(0.66) benign(0.003) TCGA-34-A5IX-01 8 39505892 39505892 A G ADAM18 Missense_Mutation p.N359S 0.20 tolerated(1) possibly_damaging(0.779) TCGA-34-A5IX-01 8 57213953 57213953 C A SDR16C5 3'UTR 0.33 TCGA-34-A5IX-01 8 59352307 59352307 G T UBXN2B Nonsense_Mutation p.G217* 0.26 TCGA-34-A5IX-01 8 88363957 88363957 A T CNBD1 Missense_Mutation p.N363Y 0.33 deleterious(0.01) probably_damaging(0.982) TCGA-34-A5IX-01 9 127566390 127566390 A T OLFML2A Missense_Mutation p.T313S 0.32 tolerated(0.61) benign(0.03) TCGA-34-A5IX-01 9 140941862 140941862 C A CACNA1B Nonsense_Mutation p.Y1185* 0.28 TCGA-34-A5IX-01 9 35703856 35703856 C A TLN1 Silent p.L2091L 0.31 TCGA-34-A5IX-01 9 95094462 95094462 C G CENPP Missense_Mutation p.Q40E 0.37 deleterious(0.04) benign(0.042) TCGA-34-A5IX-01 X 132160409 132160409 G T USP26 Missense_Mutation p.Q614K 0.61 tolerated(0.06) benign(0.22) TCGA-34-A5IX-01 X 47272645 47272645 T C ZNF157 Silent p.C391C 0.52 TCGA-34-A5IX-01 Y 4968705 4968705 C T PCDH11Y Missense_Mutation p.P1029L 0.29 deleterious(0.04) benign(0.149) TCGA-37-3783-01 10 104594716 104594716 G A CYP17A1 Silent p.S164S 0.15 TCGA-37-3783-01 10 106960951 106960951 G A SORCS3 Missense_Mutation p.R734Q 0.18 tolerated(0.15) benign(0.006) TCGA-37-3783-01 10 113924352 113924352 T A GPAM Missense_Mutation p.Q413L 0.26 deleterious(0.01) possibly_damaging(0.718) TCGA-37-3783-01 10 118451946 118451946 C T HSPA12A Silent p.E193E 0.15 TCGA-37-3783-01 10 134579283 134579283 G C INPP5A Missense_Mutation p.E304Q 0.12 tolerated(0.15) probably_damaging(0.913) TCGA-37-3783-01 10 15325930 15325930 G C FAM171A1 Missense_Mutation p.S91W 0.12 deleterious(0) possibly_damaging(0.729) TCGA-37-3783-01 10 15726081 15726081 C T ITGA8 Missense_Mutation p.E164K 0.17 tolerated(0.06) possibly_damaging(0.682) TCGA-37-3783-01 10 16873253 16873253 G C CUBN Missense_Mutation p.S3509C 0.17 deleterious(0) possibly_damaging(0.88) TCGA-37-3783-01 10 17275778 17275778 G A VIM Missense_Mutation p.E244K 0.19 deleterious(0) probably_damaging(0.948) TCGA-37-3783-01 10 32306105 32306105 C T KIF5B Silent p.K909K 0.19 TCGA-37-3783-01 10 34606207 34606207 C - PARD3 Frame_Shift_Del p.D968Ifs*11 0.17 TCGA-37-3783-01 10 44880406 44880406 G C CXCL12 Silent p.L16L 0.11 TCGA-37-3783-01 10 52502713 52502713 G A ASAH2B Missense_Mutation p.R10H 0.16 tolerated_low_confidence(1) benign(0) TCGA-37-3783-01 10 5803348 5803348 G A FAM208B Missense_Mutation p.R2363Q 0.16 tolerated(0.22) benign(0.048) TCGA-37-3783-01 10 71243548 71243548 C T TSPAN15 Silent p.L66L 0.17 TCGA-37-3783-01 10 75013697 75013697 G C TTC18 3'UTR 0.22 TCGA-37-3783-01 10 75676259 75676259 G C PLAU Missense_Mutation p.R411T 0.15 deleterious(0) probably_damaging(0.978) TCGA-37-3783-01 10 84745006 84745006 C T NRG3 Missense_Mutation p.S579L 0.18 deleterious(0) probably_damaging(0.98) TCGA-37-3783-01 10 88854340 88854340 C T GLUD1 Missense_Mutation p.D63N 0.06 tolerated(0.34) benign(0.006) TCGA-37-3783-01 11 102993708 102993708 C T DYNC2H1 Missense_Mutation p.S547F 0.24 benign(0.357) TCGA-37-3783-01 11 104897668 104897669 AG - CASP1 Frame_Shift_Del p.S339Lfs*16 0.12 TCGA-37-3783-01 11 105623869 105623869 C A GRIA4 Nonsense_Mutation p.S137* 0.21 TCGA-37-3783-01 11 107288944 107288944 G C CWF19L2 Missense_Mutation p.I501M 0.17 deleterious(0) benign(0.209) TCGA-37-3783-01 11 111864426 111864426 G T DIXDC1 Missense_Mutation p.V466F 0.14 tolerated(0.25) possibly_damaging(0.805) TCGA-37-3783-01 11 114121138 114121138 C T ZBTB16 Missense_Mutation p.S628L 0.17 deleterious(0.01) probably_damaging(0.973) TCGA-37-3783-01 11 116633715 116633715 G A BUD13 Missense_Mutation p.S197F 0.13 deleterious(0) benign(0.053) TCGA-37-3783-01 11 117969767 117969767 C T TMPRSS4 Silent p.I37I 0.20 TCGA-37-3783-01 11 118374740 118374740 G A KMT2A Silent p.Q2711Q 0.20 TCGA-37-3783-01 11 12225953 12225953 G A MICAL2 Missense_Mutation p.G141R 0.21 deleterious(0) probably_damaging(1) TCGA-37-3783-01 11 123753825 123753825 G C TMEM225 3'UTR 0.15 TCGA-37-3783-01 11 124135314 124135314 A G OR8G5 Missense_Mutation p.M198V 0.19 deleterious(0.02) benign(0.013) TCGA-37-3783-01 11 124189230 124189230 T A OR8D2 Silent p.L288L 0.17 TCGA-37-3783-01 11 17552952 17552952 C A USH1C Missense_Mutation p.R81L 0.30 deleterious(0) probably_damaging(0.995) TCGA-37-3783-01 11 20070277 20070277 C T NAV2 Silent p.L1325L 0.30 TCGA-37-3783-01 11 22399221 22399221 G T SLC17A6 Nonsense_Mutation p.E562* 0.20 TCGA-37-3783-01 11 32452203 32452203 G T WT1 Intron 0.24 TCGA-37-3783-01 11 44098996 44098996 G C ACCS Intron 0.22 TCGA-37-3783-01 11 46811703 46811703 G A CKAP5 Missense_Mutation p.L600F 0.19 tolerated(0.11) benign(0.039) TCGA-37-3783-01 11 47282842 47282842 G C NR1H3 Missense_Mutation p.E184Q 0.06 tolerated(0.54) benign(0.024) TCGA-37-3783-01 11 47446672 47446672 C A PSMC3 Missense_Mutation p.E95D 0.20 tolerated(0.11) probably_damaging(0.987) TCGA-37-3783-01 11 47510421 47510421 C G CELF1 Missense_Mutation p.R76T 0.13 deleterious(0) benign(0.44) TCGA-37-3783-01 11 55587932 55587932 C G OR5D18 Missense_Mutation p.S276C 0.23 deleterious(0.03) probably_damaging(0.995) TCGA-37-3783-01 11 55703748 55703748 C T OR5I1 Silent p.G43G 0.18 TCGA-37-3783-01 11 55927259 55927259 A T OR8K5 Missense_Mutation p.C179S 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-37-3783-01 11 61908281 61908281 C - INCENP Frame_Shift_Del p.P484Qfs*23 0.22 TCGA-37-3783-01 11 63257743 63257743 A G HRASLS5 Silent p.L81L 0.20 TCGA-37-3783-01 11 63919774 63919774 C G MACROD1 Missense_Mutation p.E130D 0.14 tolerated(0.15) probably_damaging(0.93) TCGA-37-3783-01 11 65124249 65124249 G A TIGD3 Missense_Mutation p.D324N 0.17 tolerated(0.48) benign(0.007) TCGA-37-3783-01 11 65385808 65385808 C T PCNXL3 Silent p.S325S 0.21 TCGA-37-3783-01 11 65403086 65403086 C T PCNXL3 Silent p.S1757S 0.23 TCGA-37-3783-01 11 66050896 66050896 G A CNIH2 Intron 0.19 TCGA-37-3783-01 11 66328210 66328210 A G CTSF 3'Flank 0.18 TCGA-37-3783-01 11 67057809 67057809 C G ANKRD13D Silent p.V81V 0.20 TCGA-37-3783-01 11 67207901 67207901 C G CORO1B Missense_Mutation p.E256Q 0.18 tolerated(0.26) benign(0.018) TCGA-37-3783-01 11 7110612 7110612 G C RBMXL2 Silent p.P87P 0.17 TCGA-37-3783-01 11 71724415 71724415 C T NUMA1 Silent p.E1378E 0.22 TCGA-37-3783-01 11 74913991 74913991 C T SLCO2B1 Silent p.F603F 0.20 TCGA-37-3783-01 11 75438510 75438510 C A MOGAT2 Silent p.R101R 0.15 TCGA-37-3783-01 11 75852449 75852449 G A UVRAG Missense_Mutation p.D698N 0.17 deleterious_low_confidence(0) probably_damaging(0.949) TCGA-37-3783-01 11 85374729 85374729 G A CREBZF 3'UTR 0.16 TCGA-37-3783-01 11 8948644 8948644 C G C11orf16 Missense_Mutation p.Q134H 0.22 tolerated(0.11) benign(0.033) TCGA-37-3783-01 11 89537478 89537478 C T TRIM49 Missense_Mutation p.E54K 0.12 tolerated(0.5) benign(0.029) TCGA-37-3783-01 11 93862491 93862491 C T PANX1 Nonsense_Mutation p.Q5* 0.27 TCGA-37-3783-01 11 94180422 94180422 C T MRE11A Silent p.Q582Q 0.05 TCGA-37-3783-01 11 9450345 9450345 C T IPO7 Intron 0.20 TCGA-37-3783-01 11 96117808 96117808 G C CCDC82 Nonsense_Mutation p.S35* 0.17 TCGA-37-3783-01 12 100811899 100811899 T A SLC17A8 Missense_Mutation p.C464S 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-37-3783-01 12 101491677 101491677 A C ANO4 Missense_Mutation p.M619L 0.12 deleterious(0.02) probably_damaging(0.988) TCGA-37-3783-01 12 102131722 102131722 G A SYCP3 5'UTR 0.20 TCGA-37-3783-01 12 110834113 110834113 C A ANAPC7 Silent p.V116V 0.17 TCGA-37-3783-01 12 113874664 113874664 T C SDSL Silent p.A260A 0.09 TCGA-37-3783-01 12 118693275 118693275 C G TAOK3 Missense_Mutation p.G33A 0.13 deleterious(0) probably_damaging(0.999) TCGA-37-3783-01 12 123467339 123467339 C G ARL6IP4 3'UTR 0.22 TCGA-37-3783-01 12 12483226 12483226 G C MANSC1 Nonsense_Mutation p.S344* 0.10 TCGA-37-3783-01 12 129467715 129467715 G T GLT1D1 3'UTR 0.11 TCGA-37-3783-01 12 16043599 16043599 A C STRAP Missense_Mutation p.E133D 0.15 tolerated(1) benign(0.036) TCGA-37-3783-01 12 21926476 21926476 C G KCNJ8 Silent p.P25P 0.10 TCGA-37-3783-01 12 26839460 26839460 C T ITPR2 Missense_Mutation p.E368K 0.15 deleterious(0) probably_damaging(0.974) TCGA-37-3783-01 12 31540554 31540554 T C DENND5B Missense_Mutation p.K1270E 0.11 deleterious(0.01) probably_damaging(0.936) TCGA-37-3783-01 12 41327501 41327501 C T CNTN1 Missense_Mutation p.P269L 0.10 deleterious(0) probably_damaging(1) TCGA-37-3783-01 12 41327632 41327632 G A CNTN1 Missense_Mutation p.E313K 0.12 tolerated(0.56) benign(0.027) TCGA-37-3783-01 12 45410159 45410159 T A DBX2 Silent p.P310P 0.15 TCGA-37-3783-01 12 4920413 4920413 C T KCNA6 Silent p.D402D 0.10 TCGA-37-3783-01 12 52501279 52501279 C G AC078864.1 3'Flank 0.14 TCGA-37-3783-01 12 53427811 53427811 C T EIF4B Missense_Mutation p.R401W 0.21 deleterious(0.01) benign(0.017) TCGA-37-3783-01 12 54109031 54109031 T C CALCOCO1 Missense_Mutation p.N447D 0.22 deleterious(0.03) benign(0.063) TCGA-37-3783-01 12 54795380 54795380 G A ITGA5 Silent p.V792V 0.15 TCGA-37-3783-01 12 55688850 55688850 G T OR6C6 Missense_Mutation p.P56Q 0.11 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-37-3783-01 12 56214138 56214138 C G ORMDL2 Missense_Mutation p.Q141E 0.20 deleterious(0.04) benign(0.142) TCGA-37-3783-01 12 57909985 57909985 G C MARS Intron 0.15 TCGA-37-3783-01 12 65564780 65564780 C A LEMD3 Missense_Mutation p.F468L 0.15 deleterious(0.01) possibly_damaging(0.688) TCGA-37-3783-01 12 66151883 66151883 C T RPSAP52 RNA 0.14 TCGA-37-3783-01 12 70824332 70824332 C T KCNMB4 Silent p.L178L 0.15 TCGA-37-3783-01 12 72866928 72866928 G T TRHDE Missense_Mutation p.G473C 0.14 deleterious(0) possibly_damaging(0.817) TCGA-37-3783-01 12 7469835 7469835 C T ACSM4 Silent p.H241H 0.25 TCGA-37-3783-01 12 78400750 78400750 G C NAV3 Missense_Mutation p.V478L 0.21 tolerated(0.31) benign(0.007) TCGA-37-3783-01 12 82850552 82850552 G C METTL25 Missense_Mutation p.D509H 0.19 deleterious(0) probably_damaging(0.936) TCGA-37-3783-01 12 9318783 9318783 A T PZP Missense_Mutation p.V708E 0.14 tolerated(0.46) benign(0.004) TCGA-37-3783-01 12 96407023 96407023 T C LTA4H Missense_Mutation p.N441S 0.19 tolerated(0.36) benign(0.001) TCGA-37-3783-01 12 9760484 9760484 C G KLRB1 5'Flank 0.23 TCGA-37-3783-01 13 103326657 103326657 C T TPP2 Silent p.T1119T 0.13 TCGA-37-3783-01 13 27255321 27255321 G A WASF3 Missense_Mutation p.E283K 0.22 deleterious(0.04) possibly_damaging(0.579) TCGA-37-3783-01 13 28844960 28844960 C T PAN3 Nonsense_Mutation p.R639* 0.12 TCGA-37-3783-01 13 29599209 29599209 G A MTUS2 Missense_Mutation p.R135Q 0.06 tolerated(0.32) benign(0.003) TCGA-37-3783-01 13 37446942 37446942 C T SMAD9 Missense_Mutation p.A175T 0.11 tolerated(0.74) benign(0.158) TCGA-37-3783-01 13 41533078 41533078 G A ELF1 Silent p.A49A 0.09 TCGA-37-3783-01 13 43491753 43491753 C G EPSTI1 Missense_Mutation p.S233T 0.15 deleterious(0.03) possibly_damaging(0.474) TCGA-37-3783-01 13 48562755 48562756 - A SUCLA2 Frame_Shift_Ins p.C152Lfs*8 0.12 TCGA-37-3783-01 13 61985578 61985578 G C PCDH20 Missense_Mutation p.S885C 0.21 tolerated(0.09) probably_damaging(0.931) TCGA-37-3783-01 13 84455289 84455289 G A SLITRK1 Silent p.I118I 0.14 TCGA-37-3783-01 13 97639439 97639439 A C OXGR1 Missense_Mutation p.L192R 0.14 deleterious(0.04) probably_damaging(0.992) TCGA-37-3783-01 14 24617669 24617669 G T RNF31 Intron 0.29 TCGA-37-3783-01 14 38724625 38724625 G T CLEC14A Silent p.A201A 0.14 TCGA-37-3783-01 14 42360802 42360802 C A LRFN5 Missense_Mutation p.Q579K 0.07 tolerated(0.23) benign(0.142) TCGA-37-3783-01 14 52192507 52192507 G C FRMD6 Silent p.V501V 0.10 TCGA-37-3783-01 14 55903374 55903374 C T TBPL2 Silent p.E171E 0.38 TCGA-37-3783-01 14 68228958 68228958 C G ZFYVE26 Missense_Mutation p.E2111Q 0.31 tolerated(1) benign(0.067) TCGA-37-3783-01 14 72054674 72054674 G A SIPA1L1 Missense_Mutation p.V29I 0.30 tolerated(0.79) benign(0.002) TCGA-37-3783-01 14 74876048 74876048 C T SYNDIG1L Missense_Mutation p.D134N 0.32 tolerated(0.11) benign(0.054) TCGA-37-3783-01 15 23932119 23932119 G T NDN Silent p.A82A 0.37 TCGA-37-3783-01 15 24922909 24922909 C T NPAP1 Missense_Mutation p.T632I 0.04 deleterious(0.02) possibly_damaging(0.806) TCGA-37-3783-01 15 25336842 25336842 T C SNORD116-23 5'Flank 0.17 TCGA-37-3783-01 15 25417637 25417637 T A SNORD115-3 5'Flank 0.15 TCGA-37-3783-01 15 25490450 25490450 G A SNORD115-40 3'Flank 0.25 TCGA-37-3783-01 15 33359183 33359183 C G FMN1 Missense_Mutation p.K301N 0.19 deleterious(0.01) unknown(0) TCGA-37-3783-01 15 34380305 34380305 T C EMC7 Missense_Mutation p.I175M 0.25 deleterious(0.04) benign(0.042) TCGA-37-3783-01 15 38591612 38591612 G C SPRED1 Missense_Mutation p.R24P 0.17 deleterious(0) probably_damaging(1) TCGA-37-3783-01 15 38614556 38614556 G A SPRED1 Missense_Mutation p.D108N 0.04 deleterious(0.01) probably_damaging(0.954) TCGA-37-3783-01 15 59179632 59179632 C G SLTM Missense_Mutation p.R828T 0.22 deleterious(0) probably_damaging(0.992) TCGA-37-3783-01 15 65772652 65772652 C T DPP8 Missense_Mutation p.D418N 0.27 tolerated(0.59) probably_damaging(0.999) TCGA-37-3783-01 15 75013087 75013088 - ACCT CYP1A1 Frame_Shift_Ins p.L428Rfs*4 0.14 TCGA-37-3783-01 16 16103674 16103674 C T ABCC1 Silent p.L89L 0.07 TCGA-37-3783-01 16 22358212 22358212 C G CDR2 3'UTR 0.18 TCGA-37-3783-01 16 24582687 24582687 C G RBBP6 Missense_Mutation p.L1434V 0.18 tolerated_low_confidence(0.42) unknown(0) TCGA-37-3783-01 16 30899200 30899200 C A BCL7C Missense_Mutation p.A214S 0.14 tolerated_low_confidence(0.11) benign(0.003) TCGA-37-3783-01 16 3139147 3139147 C T ZSCAN10 Missense_Mutation p.R708H 0.09 deleterious(0) probably_damaging(0.999) TCGA-37-3783-01 16 335575 335575 G C PDIA2 Missense_Mutation p.E331Q 0.12 tolerated(0.16) benign(0.034) TCGA-37-3783-01 16 46649999 46649999 G A SHCBP1 Missense_Mutation p.S152F 0.12 tolerated(0.06) benign(0.006) TCGA-37-3783-01 16 4935007 4935007 C G PPL Missense_Mutation p.E1217Q 0.17 tolerated(0.38) benign(0.397) TCGA-37-3783-01 16 57238833 57238833 G A RSPRY1 Missense_Mutation p.R88Q 0.20 tolerated(0.24) possibly_damaging(0.859) TCGA-37-3783-01 16 61851444 61851444 G C CDH8 Missense_Mutation p.L406V 0.14 tolerated(1) benign(0.002) TCGA-37-3783-01 16 72108264 72108264 G A HPR Missense_Mutation p.R58K 0.30 tolerated(0.91) benign(0.001) TCGA-37-3783-01 16 84224796 84224796 C A ADAD2 5'UTR 0.32 TCGA-37-3783-01 16 90000142 90000142 G A TUBB3 Intron 0.31 TCGA-37-3783-01 16 90162247 90162247 G A TUBB8P7 RNA 0.05 TCGA-37-3783-01 17 16691420 16691420 G C CCDC144A 3'UTR 0.16 TCGA-37-3783-01 17 25938601 25938601 C T KSR1 Silent p.S698S 0.16 TCGA-37-3783-01 17 26655743 26655743 C T IFT20 Missense_Mutation p.E138K 0.10 deleterious(0.04) benign(0.373) TCGA-37-3783-01 17 26655748 26655748 T A IFT20 Missense_Mutation p.E136V 0.10 deleterious(0) probably_damaging(0.956) TCGA-37-3783-01 17 27065226 27065226 C G NEK8 Missense_Mutation p.H395Q 0.13 tolerated(0.24) benign(0.055) TCGA-37-3783-01 17 29111225 29111225 A G CRLF3 Missense_Mutation p.W437R 0.17 deleterious(0) possibly_damaging(0.878) TCGA-37-3783-01 17 29151707 29151707 G T CRLF3 5'UTR 0.17 TCGA-37-3783-01 17 37824826 37824826 G A PNMT Missense_Mutation p.R33H 0.21 deleterious(0.04) benign(0.01) TCGA-37-3783-01 17 38859884 38859884 G C KRT24 Missense_Mutation p.S21C 0.04 deleterious_low_confidence(0.01) unknown(0) TCGA-37-3783-01 17 39261648 39261648 G A KRTAP4-9 Missense_Mutation p.S3N 0.17 tolerated(1) unknown(0) TCGA-37-3783-01 17 40337455 40337455 G C HCRT 5'UTR 0.14 TCGA-37-3783-01 17 43585718 43585718 G C LRRC37A4P RNA 0.18 TCGA-37-3783-01 17 55079507 55079507 C G SCPEP1 Missense_Mutation p.L421V 0.20 deleterious(0.01) probably_damaging(0.989) TCGA-37-3783-01 17 60038399 60038399 T C MED13 Missense_Mutation p.K1770R 0.19 tolerated(0.36) probably_damaging(0.982) TCGA-37-3783-01 17 62130629 62130629 C T ERN1 Intron 0.15 TCGA-37-3783-01 17 62272454 62272454 C A TEX2 Missense_Mutation p.G549V 0.27 deleterious(0) probably_damaging(0.999) TCGA-37-3783-01 17 644908 644908 A G FAM57A 3'UTR 0.25 TCGA-37-3783-01 17 67146196 67146196 G C ABCA10 Missense_Mutation p.S1469C 0.04 deleterious(0.01) possibly_damaging(0.792) TCGA-37-3783-01 17 72840614 72840614 G A GRIN2C Missense_Mutation p.S795L 0.11 deleterious(0) probably_damaging(0.965) TCGA-37-3783-01 17 72926486 72926486 C T OTOP2 Silent p.L252L 0.10 TCGA-37-3783-01 17 72926487 72926487 T A OTOP2 Missense_Mutation p.F253I 0.10 tolerated(0.21) possibly_damaging(0.557) TCGA-37-3783-01 17 73723837 73723837 G C ITGB4 Missense_Mutation p.E124Q 0.09 tolerated(0.71) probably_damaging(0.999) TCGA-37-3783-01 17 73870533 73870533 G C TRIM47 3'UTR 0.07 TCGA-37-3783-01 17 73998597 73998597 G A CDK3 Silent p.V164V 0.04 TCGA-37-3783-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.24 tolerated(0.13) possibly_damaging(0.631) TCGA-37-3783-01 18 13056361 13056361 G T CEP192 Missense_Mutation p.A1258S 0.23 deleterious(0.04) benign(0.085) TCGA-37-3783-01 18 25593661 25593661 C T CDH2 Missense_Mutation p.E129K 0.19 tolerated(0.7) benign(0.002) TCGA-37-3783-01 18 32462073 32462073 G C DTNA Missense_Mutation p.E648Q 0.16 deleterious_low_confidence(0) possibly_damaging(0.889) TCGA-37-3783-01 18 42531989 42531989 A G SETBP1 Missense_Mutation p.D895G 0.21 deleterious(0.02) probably_damaging(0.997) TCGA-37-3783-01 18 43674968 43674968 T C ATP5A1 Intron 0.18 TCGA-37-3783-01 18 51813728 51813728 G T POLI Missense_Mutation p.R382L 0.21 deleterious(0) probably_damaging(0.937) TCGA-37-3783-01 18 67816221 67816221 T G RTTN Missense_Mutation p.K742T 0.17 deleterious(0.03) benign(0.102) TCGA-37-3783-01 18 72346592 72346592 C A ZNF407 Missense_Mutation p.S1206Y 0.14 tolerated(0.07) possibly_damaging(0.549) TCGA-37-3783-01 18 8394534 8394534 G T PTPRM Silent p.R1423R 0.11 TCGA-37-3783-01 19 13255227 13255227 G C STX10 Silent p.L249L 0.07 TCGA-37-3783-01 19 13255242 13255242 G C STX10 Missense_Mutation p.I244M 0.12 deleterious(0.03) benign(0.278) TCGA-37-3783-01 19 17951112 17951112 G A JAK3 Missense_Mutation p.S394L 0.20 deleterious(0.03) benign(0.305) TCGA-37-3783-01 19 37975043 37975043 G A ZNF570 Silent p.Q173Q 0.21 TCGA-37-3783-01 19 38028524 38028524 G A ZNF793 Missense_Mutation p.E322K 0.11 deleterious(0.04) possibly_damaging(0.824) TCGA-37-3783-01 19 39307163 39307163 C A ECH1 Nonsense_Mutation p.E197* 0.07 TCGA-37-3783-01 19 46914321 46914321 C - CCDC8 3'UTR 0.18 TCGA-37-3783-01 19 47700589 47700589 A G SAE1 Missense_Mutation p.D278G 0.19 tolerated(0.14) benign(0.002) TCGA-37-3783-01 19 50058997 50058997 C G NOSIP 3'UTR 0.16 TCGA-37-3783-01 19 50193365 50193365 G A ADM5 Missense_Mutation p.R26Q 0.50 tolerated_low_confidence(0.28) benign(0.05) TCGA-37-3783-01 19 51274865 51274865 G A GPR32 Silent p.A336A 0.09 TCGA-37-3783-01 19 52090506 52090506 G T ZNF175 Nonsense_Mutation p.E308* 0.14 TCGA-37-3783-01 19 53005153 53005153 C G ZNF578 Missense_Mutation p.L19V 0.13 tolerated(0.13) benign(0.14) TCGA-37-3783-01 19 53015037 53015037 C G ZNF578 Nonsense_Mutation p.S468* 0.13 TCGA-37-3783-01 19 53473672 53473672 G C ZNF702P RNA 0.08 TCGA-37-3783-01 19 54416138 54416138 C A CACNG7 Missense_Mutation p.A18E 0.14 deleterious(0.02) probably_damaging(0.961) TCGA-37-3783-01 19 56701164 56701164 T C ZSCAN5B 3'UTR 0.13 TCGA-37-3783-01 19 57327338 57327338 G T PEG3 Silent p.T824T 0.18 TCGA-37-3783-01 19 58551845 58551845 C T ZSCAN1 Missense_Mutation p.P133L 0.08 tolerated(0.19) benign(0.006) TCGA-37-3783-01 19 58863950 58863950 T C A1BG Intron 0.18 TCGA-37-3783-01 19 8438651 8438651 C T ANGPTL4 Missense_Mutation p.P368S 0.18 tolerated(0.1) probably_damaging(1) TCGA-37-3783-01 19 9017381 9017381 G A MUC16 Missense_Mutation p.P12648L 0.14 benign(0.072) TCGA-37-3783-01 19 9297353 9297353 G A OR7D2 Missense_Mutation p.G299E 0.15 tolerated_low_confidence(0.13) benign(0.049) TCGA-37-3783-01 19 9577788 9577788 C A ZNF560 Missense_Mutation p.R612L 0.13 tolerated(0.27) benign(0.149) TCGA-37-3783-01 1 100746847 100746847 C T RTCA Intron 0.10 TCGA-37-3783-01 1 101705208 101705208 G A S1PR1 Missense_Mutation p.R223K 0.22 deleterious(0.05) possibly_damaging(0.633) TCGA-37-3783-01 1 10434507 10434507 G C KIF1B Missense_Mutation p.E1648Q 0.05 tolerated(0.76) probably_damaging(0.986) TCGA-37-3783-01 1 111494566 111494566 C T LRIF1 Missense_Mutation p.A314T 0.17 deleterious(0) possibly_damaging(0.908) TCGA-37-3783-01 1 112029246 112029246 G A ADORA3 Silent p.C278C 0.22 TCGA-37-3783-01 1 114247382 114247382 G C PHTF1 Missense_Mutation p.S570C 0.10 deleterious(0) probably_damaging(0.999) TCGA-37-3783-01 1 1154233 1154233 C T SDF4 Missense_Mutation p.E218K 0.11 tolerated(0.25) probably_damaging(0.926) TCGA-37-3783-01 1 149858143 149858143 C T HIST2H2BE Silent p.K16K 0.17 TCGA-37-3783-01 1 1509930 1509930 G A SSU72 Missense_Mutation p.S3L 0.22 tolerated(0.3) benign(0) TCGA-37-3783-01 1 152191617 152191617 G A HRNR Nonsense_Mutation p.Q830* 0.21 TCGA-37-3783-01 1 152275409 152275409 C G FLG Missense_Mutation p.D3985H 0.18 unknown(0) TCGA-37-3783-01 1 152281208 152281208 C A FLG Nonsense_Mutation p.E2052* 0.14 TCGA-37-3783-01 1 154042813 154042813 G A NUP210L Silent p.F830F 0.17 TCGA-37-3783-01 1 156507057 156507057 C T IQGAP3 Missense_Mutation p.R1113K 0.05 tolerated(0.45) possibly_damaging(0.656) TCGA-37-3783-01 1 166831654 166831654 G C TADA1 Intron 0.12 TCGA-37-3783-01 1 171956860 171956860 G T DNM3 Missense_Mutation p.E100D 0.06 deleterious(0) probably_damaging(0.96) TCGA-37-3783-01 1 176564447 176564447 C A PAPPA2 Silent p.V569V 0.14 TCGA-37-3783-01 1 186157078 186157078 G C HMCN1 Missense_Mutation p.R5493T 0.12 probably_damaging(0.942) TCGA-37-3783-01 1 190067726 190067726 G T BRINP3 Missense_Mutation p.P575T 0.10 deleterious(0) probably_damaging(0.997) TCGA-37-3783-01 1 200972830 200972830 G A KIF21B Missense_Mutation p.R366W 0.12 deleterious(0) probably_damaging(0.997) TCGA-37-3783-01 1 206623739 206623739 C G SRGAP2 Missense_Mutation p.P617R 0.06 deleterious(0) possibly_damaging(0.759) TCGA-37-3783-01 1 21036133 21036133 C T KIF17 Silent p.V223V 0.05 TCGA-37-3783-01 1 216061896 216061896 G A USH2A Missense_Mutation p.R2699W 0.07 probably_damaging(0.998) TCGA-37-3783-01 1 217784282 217784282 C G GPATCH2 Missense_Mutation p.E323Q 0.11 tolerated(0.14) benign(0.005) TCGA-37-3783-01 1 220439995 220439995 G A RAB3GAP2 Intron 0.05 TCGA-37-3783-01 1 228444513 228444513 G C OBSCN Missense_Mutation p.E1583Q 0.11 probably_damaging(0.971) TCGA-37-3783-01 1 228475624 228475624 C T OBSCN Silent p.F3687F 0.10 TCGA-37-3783-01 1 229730377 229730377 G A TAF5L Silent p.N479N 0.07 TCGA-37-3783-01 1 22987712 22987712 G T C1QB Missense_Mutation p.D199Y 0.19 deleterious(0) probably_damaging(1) TCGA-37-3783-01 1 230979318 230979318 C A C1orf198 Missense_Mutation p.D237Y 0.11 deleterious(0) probably_damaging(0.957) TCGA-37-3783-01 1 233394590 233394590 C T PCNXL2 Missense_Mutation p.D340N 0.10 tolerated_low_confidence(0.23) benign(0.051) TCGA-37-3783-01 1 235383152 235383152 G A ARID4B Silent p.S513S 0.03 TCGA-37-3783-01 1 235937219 235937219 C G LYST Missense_Mutation p.D1903H 0.08 tolerated(0.11) benign(0.186) TCGA-37-3783-01 1 236399131 236399131 G A ERO1LB Nonsense_Mutation p.R211* 0.12 TCGA-37-3783-01 1 236706288 236706288 T C LGALS8 Missense_Mutation p.V208A 0.57 tolerated(0.87) benign(0.001) TCGA-37-3783-01 1 236727888 236727888 C G HEATR1 Missense_Mutation p.E1503D 0.11 tolerated(0.55) benign(0.003) TCGA-37-3783-01 1 237604775 237604775 C A RYR2 Missense_Mutation p.Q388K 0.06 benign(0.047) TCGA-37-3783-01 1 237868571 237868571 T C RYR2 Missense_Mutation p.F3170L 0.58 possibly_damaging(0.885) TCGA-37-3783-01 1 240070744 240070744 G C CHRM3 5'UTR 0.10 TCGA-37-3783-01 1 245027180 245027180 C T HNRNPU Missense_Mutation p.E144K 0.10 deleterious(0.03) benign(0.292) TCGA-37-3783-01 1 247769106 247769106 C T OR2G3 Silent p.F73F 0.11 TCGA-37-3783-01 1 247835987 247835987 G C OR13G1 Silent p.R119R 0.40 TCGA-37-3783-01 1 248004611 248004614 CTCG ATTAA OR11L1 Nonsense_Mutation p.E196* 0.20 TCGA-37-3783-01 1 248343428 248343428 C T OR2M2 Silent p.L47L 0.44 TCGA-37-3783-01 1 248436606 248436606 C A OR2T33 Nonsense_Mutation p.E171* 0.09 TCGA-37-3783-01 1 248524910 248524910 C A OR2T4 Missense_Mutation p.H10N 0.44 deleterious_low_confidence(0.02) benign(0.002) TCGA-37-3783-01 1 32657926 32657926 C G TXLNA Silent p.V326V 0.11 TCGA-37-3783-01 1 33799704 33799705 - C PHC2 Frame_Shift_Ins p.A582Gfs*27 0.10 TCGA-37-3783-01 1 38003401 38003401 T C SNIP1 Missense_Mutation p.D380G 0.23 deleterious(0.01) possibly_damaging(0.89) TCGA-37-3783-01 1 45793514 45793514 G A HPDL Missense_Mutation p.E232K 0.22 deleterious(0) probably_damaging(0.998) TCGA-37-3783-01 1 52821929 52821929 C T CC2D1B Silent p.L667L 0.14 TCGA-37-3783-01 1 59247951 59247951 G C JUN Missense_Mutation p.I264M 0.25 deleterious(0.03) probably_damaging(0.981) TCGA-37-3783-01 1 62330108 62330108 C G INADL Missense_Mutation p.Q880E 0.11 tolerated(0.23) benign(0.002) TCGA-37-3783-01 1 62713308 62713308 C T KANK4 Missense_Mutation p.D907N 0.19 deleterious(0.01) probably_damaging(0.948) TCGA-37-3783-01 1 6293539 6293539 C AA ICMT Frame_Shift_Ins p.W150Ffs*43 0.15 TCGA-37-3783-01 1 6314966 6314966 G A GPR153 5'UTR 0.26 TCGA-37-3783-01 1 75065587 75065587 C G C1orf173 Missense_Mutation p.E506D 0.10 tolerated(0.06) possibly_damaging(0.69) TCGA-37-3783-01 1 82409045 82409045 A T LPHN2 Missense_Mutation p.I264F 0.21 deleterious(0) probably_damaging(0.979) TCGA-37-3783-01 1 87207947 87207947 C G SH3GLB1 Nonsense_Mutation p.S294* 0.11 TCGA-37-3783-01 1 87208108 87208108 C T SH3GLB1 Silent p.L348L 0.14 TCGA-37-3783-01 1 92177902 92177902 G A TGFBR3 Silent p.F688F 0.12 TCGA-37-3783-01 20 15480442 15480442 G T MACROD2 Missense_Mutation p.V199F 0.11 deleterious(0.05) benign(0.216) TCGA-37-3783-01 20 31590418 31590418 C G SUN5 Silent p.L62L 0.18 TCGA-37-3783-01 20 33876708 33876708 G C FAM83C Silent p.L189L 0.26 TCGA-37-3783-01 20 34241396 34241396 G A RBM12 Missense_Mutation p.H617Y 0.15 deleterious(0.01) probably_damaging(0.945) TCGA-37-3783-01 20 39794432 39794432 G C PLCG1 Missense_Mutation p.E589Q 0.12 tolerated(0.06) probably_damaging(1) TCGA-37-3783-01 20 42907914 42907914 T C GDAP1L1 Missense_Mutation p.W360R 0.15 deleterious_low_confidence(0.01) benign(0.284) TCGA-37-3783-01 20 44180702 44180702 G C WFDC8 Nonsense_Mutation p.S230* 0.18 TCGA-37-3783-01 20 47587750 47587750 C T ARFGEF2 Silent p.F428F 0.03 TCGA-37-3783-01 20 58442822 58442822 C G SYCP2 Missense_Mutation p.E1357Q 0.16 tolerated(0.07) benign(0.154) TCGA-37-3783-01 20 60895861 60895861 G A LAMA5 Silent p.G2194G 0.29 TCGA-37-3783-01 20 60905967 60905967 C T LAMA5 Silent p.P1228P 0.44 TCGA-37-3783-01 20 7886903 7886903 C T HAO1 Missense_Mutation p.A207T 0.26 tolerated(0.43) benign(0.007) TCGA-37-3783-01 21 18981390 18981390 C G BTG3 Missense_Mutation p.E25Q 0.16 tolerated(0.9) benign(0.037) TCGA-37-3783-01 21 30254502 30254502 G C N6AMT1 Missense_Mutation p.Q98E 0.24 benign(0.002) TCGA-37-3783-01 21 35467886 35467886 C G SLC5A3 Missense_Mutation p.S130C 0.16 deleterious(0) probably_damaging(0.989) TCGA-37-3783-01 21 37581181 37581181 G T DOPEY2 Silent p.L220L 0.11 TCGA-37-3783-01 22 22735507 22735507 C G IGLV1-44 Missense_Mutation p.I48M 0.15 deleterious_low_confidence(0) benign(0.439) TCGA-37-3783-01 22 23214155 23214155 C T IGLV4-3 Silent p.D104D 0.20 TCGA-37-3783-01 22 24034103 24034103 G A RGL4 5'UTR 0.22 TCGA-37-3783-01 22 26694977 26694977 G A SEZ6L Missense_Mutation p.R397H 0.22 deleterious(0.03) benign(0.12) TCGA-37-3783-01 22 41521907 41521907 T G EP300 Missense_Mutation p.Y257D 0.16 unknown(0) TCGA-37-3783-01 22 41565575 41565575 A G EP300 Missense_Mutation p.Y1414C 0.18 probably_damaging(0.999) TCGA-37-3783-01 22 51137207 51137207 A G SHANK3 Missense_Mutation p.M546V 0.07 benign(0.055) TCGA-37-3783-01 2 10188682 10188682 C G KLF11 Missense_Mutation p.F406L 0.14 deleterious(0) probably_damaging(0.989) TCGA-37-3783-01 2 125660566 125660566 C A CNTNAP5 Missense_Mutation p.R1181S 0.27 tolerated(0.26) possibly_damaging(0.872) TCGA-37-3783-01 2 128628485 128628485 C A AMMECR1L Missense_Mutation p.R179L 0.13 deleterious(0) probably_damaging(1) TCGA-37-3783-01 2 129025709 129025709 G C HS6ST1 3'UTR 0.31 TCGA-37-3783-01 2 160803951 160803951 G C PLA2R1 Missense_Mutation p.H1277D 0.17 tolerated(0.08) benign(0.008) TCGA-37-3783-01 2 160824165 160824165 G A PLA2R1 Missense_Mutation p.S930L 0.17 tolerated(0.08) possibly_damaging(0.685) TCGA-37-3783-01 2 163174980 163174980 G A IFIH1 5'UTR 0.33 TCGA-37-3783-01 2 163174981 163174981 C T IFIH1 5'UTR 0.33 TCGA-37-3783-01 2 163241255 163241255 C T KCNH7 Missense_Mutation p.E969K 0.15 tolerated(0.41) benign(0.07) TCGA-37-3783-01 2 164467850 164467850 T A FIGN Silent p.S164S 0.12 TCGA-37-3783-01 2 170488434 170488434 A T PPIG Missense_Mutation p.E307V 0.17 deleterious(0.02) unknown(0) TCGA-37-3783-01 2 175292683 175292683 C G SCRN3 3'UTR 0.32 TCGA-37-3783-01 2 179599307 179599307 C G TTN Missense_Mutation p.E5082Q 0.14 TCGA-37-3783-01 2 179600714 179600714 C A TTN Missense_Mutation p.G4820V 0.26 TCGA-37-3783-01 2 179611982 179611982 C T TTN Intron 0.20 TCGA-37-3783-01 2 180817210 180817210 C G CWC22 Missense_Mutation p.R602T 0.13 deleterious(0) probably_damaging(0.978) TCGA-37-3783-01 2 187626263 187626263 C A FAM171B Silent p.L398L 0.18 TCGA-37-3783-01 2 197870509 197870509 C T ANKRD44 Silent p.L727L 0.15 TCGA-37-3783-01 2 219445385 219445385 A T RQCD1 Silent p.L42L 0.16 TCGA-37-3783-01 2 220337643 220337643 C T SPEG Silent p.H1324H 0.05 TCGA-37-3783-01 2 223806468 223806468 C T ACSL3 3'UTR 0.15 TCGA-37-3783-01 2 225729638 225729638 G C DOCK10 Nonsense_Mutation p.S475* 0.08 TCGA-37-3783-01 2 230923839 230923839 G C SLC16A14 Missense_Mutation p.S77C 0.07 deleterious(0) probably_damaging(1) TCGA-37-3783-01 2 24524941 24524941 C T ITSN2 Silent p.Q296Q 0.28 TCGA-37-3783-01 2 26864137 26864137 C T CIB4 Missense_Mutation p.E16K 0.15 deleterious(0.03) benign(0.4) TCGA-37-3783-01 2 32445321 32445321 G T SLC30A6 Nonsense_Mutation p.E349* 0.21 TCGA-37-3783-01 2 37085108 37085108 A T STRN Silent p.A576A 0.12 TCGA-37-3783-01 2 37543546 37543546 G C PRKD3 Missense_Mutation p.S41C 0.11 deleterious_low_confidence(0.01) benign(0.027) TCGA-37-3783-01 2 39214723 39214723 G C SOS1 Missense_Mutation p.S1134C 0.10 tolerated(0.18) benign(0.41) TCGA-37-3783-01 2 48896892 48896892 G T STON1-GTF2A1L Missense_Mutation p.R1041L 0.12 tolerated(0.12) benign(0) TCGA-37-3783-01 2 49190072 49190072 T C FSHR Missense_Mutation p.T630A 0.28 deleterious(0) probably_damaging(0.996) TCGA-37-3783-01 2 56210178 56210178 T C MIR217 RNA 0.22 TCGA-37-3783-01 2 64321978 64321978 G A PELI1 Missense_Mutation p.S372L 0.14 deleterious(0) probably_damaging(0.938) TCGA-37-3783-01 2 69472635 69472635 C T ANTXR1 3'UTR 0.15 TCGA-37-3783-01 2 71376996 71376996 G A MPHOSPH10 Missense_Mutation p.D633N 0.12 deleterious(0.04) possibly_damaging(0.861) TCGA-37-3783-01 2 73899587 73899587 G C ALMS1P RNA 0.16 TCGA-37-3783-01 2 75915073 75915073 A G GCFC2 Missense_Mutation p.W524R 0.17 deleterious(0) probably_damaging(1) TCGA-37-3783-01 2 77746749 77746749 G T LRRTM4 Silent p.A82A 0.19 TCGA-37-3783-01 2 79348732 79348732 C G REG1A Missense_Mutation p.P37A 0.17 deleterious(0) benign(0.098) TCGA-37-3783-01 2 84775530 84775530 G C DNAH6 Missense_Mutation p.M435I 0.10 tolerated(0.24) benign(0) TCGA-37-3783-01 2 86088343 86088343 G T ST3GAL5 Missense_Mutation p.D93E 0.10 deleterious(0.02) possibly_damaging(0.759) TCGA-37-3783-01 2 86378500 86378500 C T IMMT Missense_Mutation p.E441K 0.12 deleterious(0.01) possibly_damaging(0.593) TCGA-37-3783-01 2 88474877 88474877 C A THNSL2 Silent p.L176L 0.20 TCGA-37-3783-01 2 89986898 89986898 G T IGKV2D-29 Missense_Mutation p.W60L 0.14 deleterious(0.02) possibly_damaging(0.608) TCGA-37-3783-01 2 91843404 91843404 G A AC027612.6 RNA 0.06 TCGA-37-3783-01 2 95815590 95815590 G A ZNF514 Missense_Mutation p.H214Y 0.17 deleterious(0.02) benign(0.001) TCGA-37-3783-01 2 96690252 96690252 T C GPAT2 Missense_Mutation p.Q531R 0.20 tolerated(1) benign(0) TCGA-37-3783-01 3 10089678 10089678 A G FANCD2 Silent p.S452S 0.18 TCGA-37-3783-01 3 108175640 108175640 C G MYH15 Missense_Mutation p.R724P 0.23 deleterious(0) probably_damaging(0.958) TCGA-37-3783-01 3 118870153 118870153 G C C3orf30 3'UTR 0.13 TCGA-37-3783-01 3 124732677 124732677 C T HEG1 Silent p.E582E 0.05 TCGA-37-3783-01 3 128292266 128292266 G C C3orf27 Missense_Mutation p.L103V 0.17 possibly_damaging(0.567) TCGA-37-3783-01 3 131100970 131100970 G A NUDT16 Silent p.L73L 0.15 TCGA-37-3783-01 3 1363468 1363468 C G CNTN6 Missense_Mutation p.A299G 0.18 deleterious(0.01) possibly_damaging(0.636) TCGA-37-3783-01 3 13921278 13921278 G C WNT7A Silent p.L12L 0.22 TCGA-37-3783-01 3 147114180 147114180 C A ZIC4 Missense_Mutation p.E99D 0.21 deleterious(0.04) benign(0.016) TCGA-37-3783-01 3 151072956 151072956 C G MED12L Missense_Mutation p.P781A 0.12 deleterious(0.01) possibly_damaging(0.761) TCGA-37-3783-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.31 tolerated(0.11) possibly_damaging(0.529) TCGA-37-3783-01 3 183041140 183041140 C A MCF2L2 Splice_Site p.X163_splice 0.20 TCGA-37-3783-01 3 192516700 192516700 G C MB21D2 Missense_Mutation p.I317M 0.17 tolerated(0.12) benign(0.175) TCGA-37-3783-01 3 195511732 195511732 G C MUC4 Missense_Mutation p.P2240R 0.33 unknown(0) TCGA-37-3783-01 3 37284995 37284995 C G GOLGA4 5'UTR 0.11 TCGA-37-3783-01 3 49161171 49161171 C G LAMB2 Missense_Mutation p.E1263Q 0.24 tolerated(0.15) benign(0.394) TCGA-37-3783-01 3 64084560 64084560 G A PRICKLE2 3'UTR 0.27 TCGA-37-3783-01 3 65425633 65425633 C T MAGI1 Silent p.K397K 0.20 TCGA-37-3783-01 3 98002374 98002374 A G OR5H2 Missense_Mutation p.T215A 0.18 deleterious(0) possibly_damaging(0.782) TCGA-37-3783-01 4 102965044 102965044 G A BANK1 Missense_Mutation p.C650Y 0.20 tolerated(1) benign(0) TCGA-37-3783-01 4 103971519 103971519 G T SLC9B2 Missense_Mutation p.L155I 0.16 tolerated(0.25) benign(0.377) TCGA-37-3783-01 4 104032074 104032074 C T CENPE Silent p.L2545L 0.16 TCGA-37-3783-01 4 113483616 113483616 A G C4orf21 Silent p.C1536C 0.33 TCGA-37-3783-01 4 115585244 115585244 A G UGT8 Missense_Mutation p.N306D 0.05 tolerated(0.55) benign(0.002) TCGA-37-3783-01 4 122780234 122780234 G C BBS7 Missense_Mutation p.I147M 0.16 deleterious(0.01) probably_damaging(1) TCGA-37-3783-01 4 123542124 123542124 G A IL21 Silent p.L15L 0.07 TCGA-37-3783-01 4 126241565 126241565 C T FAT4 Silent p.L1333L 0.07 TCGA-37-3783-01 4 139966549 139966570 CTTCCTTCAATTATCCTTCAGA - CCRN4L Frame_Shift_Del p.S407Tfs*4 0.09 TCGA-37-3783-01 4 15437466 15437466 C T C1QTNF7 Silent p.I40I 0.23 TCGA-37-3783-01 4 169197295 169197295 C T DDX60 Silent p.V672V 0.15 TCGA-37-3783-01 4 175899051 175899051 C G ADAM29 Missense_Mutation p.P792R 0.16 tolerated(0.34) unknown(0) TCGA-37-3783-01 4 184182146 184182146 G C WWC2 Missense_Mutation p.S457T 0.17 deleterious(0) probably_damaging(0.993) TCGA-37-3783-01 4 3230464 3230464 C G HTT Silent p.V2657V 0.16 TCGA-37-3783-01 4 57194534 57194534 C T KIAA1211 3'UTR 0.13 TCGA-37-3783-01 4 74005638 74005638 G T ANKRD17 Missense_Mutation p.Q899K 0.13 benign(0.187) TCGA-37-3783-01 4 76805905 76805905 G A PPEF2 Silent p.L196L 0.15 TCGA-37-3783-01 4 79782588 79782588 G A BMP2K Missense_Mutation p.E345K 0.17 deleterious(0.02) possibly_damaging(0.641) TCGA-37-3783-01 4 89199700 89199700 A G PPM1K Silent p.S12S 0.15 TCGA-37-3783-01 4 96761311 96761311 G A PDHA2 Missense_Mutation p.A4T 0.09 tolerated(0.28) benign(0.014) TCGA-37-3783-01 5 112257809 112257809 C T REEP5 Missense_Mutation p.E27K 0.09 deleterious(0) possibly_damaging(0.689) TCGA-37-3783-01 5 1219191 1219191 C - SLC6A19 Frame_Shift_Del p.P451Rfs*25 0.14 TCGA-37-3783-01 5 128440953 128440953 C G ISOC1 Missense_Mutation p.Q169E 0.04 tolerated(0.49) benign(0.023) TCGA-37-3783-01 5 131825175 131825175 G C IRF1 Intron 0.18 TCGA-37-3783-01 5 137501561 137501561 C G BRD8 Missense_Mutation p.D412H 0.10 deleterious(0) probably_damaging(0.996) TCGA-37-3783-01 5 137904611 137904611 C G HSPA9 Intron 0.18 TCGA-37-3783-01 5 140236873 140236873 C A PCDHA10 Missense_Mutation p.R414S 0.15 deleterious_low_confidence(0.01) probably_damaging(0.961) TCGA-37-3783-01 5 140604413 140604413 G C PCDHB14 Missense_Mutation p.D446H 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-37-3783-01 5 140626581 140626581 G T PCDHB15 Missense_Mutation p.D479Y 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-37-3783-01 5 140711217 140711217 G T PCDHGA1 Missense_Mutation p.Q322H 0.18 tolerated_low_confidence(0.14) benign(0.168) TCGA-37-3783-01 5 140736427 140736427 G T PCDHGA4 Missense_Mutation p.D554Y 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-37-3783-01 5 140741050 140741050 C A PCDHGB2 Missense_Mutation p.P450T 0.18 deleterious(0) probably_damaging(0.996) TCGA-37-3783-01 5 145863154 145863154 C T TCERG1 Missense_Mutation p.P692S 0.11 tolerated(0.18) unknown(0) TCGA-37-3783-01 5 147889510 147889510 G T HTR4 Silent p.T195T 0.19 TCGA-37-3783-01 5 167626084 167626084 G T TENM2 Missense_Mutation p.A1043S 0.13 tolerated(0.52) benign(0) TCGA-37-3783-01 5 167645606 167645606 C T TENM2 Silent p.V1570V 0.17 TCGA-37-3783-01 5 170380621 170380624 TACT - RANBP17 Frame_Shift_Del p.Y497* 0.21 TCGA-37-3783-01 5 170722917 170722917 G C RANBP17 Missense_Mutation p.L1023F 0.13 tolerated(0.08) possibly_damaging(0.522) TCGA-37-3783-01 5 195364 195364 G T LRRC14B Missense_Mutation p.D481Y 0.12 deleterious(0) probably_damaging(1) TCGA-37-3783-01 5 33534985 33534985 G T ADAMTS12 Missense_Mutation p.P1520H 0.31 deleterious(0) probably_damaging(1) TCGA-37-3783-01 5 37201803 37201803 G T C5orf42 Missense_Mutation p.L1133M 0.13 deleterious(0) probably_damaging(0.991) TCGA-37-3783-01 5 43299062 43299062 A C HMGCS1 Silent p.P2P 0.12 TCGA-37-3783-01 5 43536991 43536991 C T PAIP1 Missense_Mutation p.R301Q 0.23 tolerated(0.27) benign(0.101) TCGA-37-3783-01 5 480121 480121 C T SLC9A3 Intron 0.21 TCGA-37-3783-01 5 52404424 52404424 G A MOCS2 5'UTR 0.17 TCGA-37-3783-01 5 54420686 54420686 C T CDC20B Missense_Mutation p.G387D 0.17 deleterious(0) benign(0.314) TCGA-37-3783-01 5 58272239 58272239 C T PDE4D Missense_Mutation p.E590K 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-37-3783-01 5 64859172 64859172 G A PPWD1 Missense_Mutation p.R12K 0.14 tolerated(0.84) benign(0.001) TCGA-37-3783-01 5 65073347 65073347 G C NLN Missense_Mutation p.E182Q 0.16 tolerated(0.16) benign(0.007) TCGA-37-3783-01 5 6602600 6602600 G A NSUN2 Silent p.I657I 0.31 TCGA-37-3783-01 6 118880183 118880183 C G PLN Missense_Mutation p.I33M 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.639) TCGA-37-3783-01 6 127834042 127834042 C T SOGA3 Missense_Mutation p.M493I 0.21 tolerated(0.21) benign(0.024) TCGA-37-3783-01 6 128151032 128151032 C G THEMIS Missense_Mutation p.E100Q 0.21 deleterious(0) probably_damaging(0.986) TCGA-37-3783-01 6 150263149 150263149 G C ULBP2 5'UTR 0.31 TCGA-37-3783-01 6 152129166 152129166 G T ESR1 Missense_Mutation p.G40V 0.21 deleterious(0) benign(0.082) TCGA-37-3783-01 6 15517468 15517468 G A JARID2 Missense_Mutation p.R1176Q 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-37-3783-01 6 160903835 160903835 C A LPAL2 RNA 0.11 TCGA-37-3783-01 6 166576077 166576077 C G T Silent p.L254L 0.53 TCGA-37-3783-01 6 169641872 169641872 C T THBS2 Silent p.E292E 0.15 TCGA-37-3783-01 6 24403169 24403169 G A MRS2 5'Flank 0.24 TCGA-37-3783-01 6 26032007 26032007 C A HIST1H3B Missense_Mutation p.Q94H 0.13 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-37-3783-01 6 29394932 29394932 G T OR11A1 Missense_Mutation p.L163M 0.14 tolerated(0.26) benign(0.222) TCGA-37-3783-01 6 29574954 29574954 G A GABBR1 Silent p.Y678Y 0.22 TCGA-37-3783-01 6 30856996 30856996 G T DDR1 Missense_Mutation p.G69V 0.12 deleterious(0) probably_damaging(0.999) TCGA-37-3783-01 6 31725965 31725965 G A MSH5 Silent p.L346L 0.10 TCGA-37-3783-01 6 31868898 31868898 A G ZBTB12 Missense_Mutation p.F62S 0.16 deleterious(0) possibly_damaging(0.637) TCGA-37-3783-01 6 33626839 33626839 C A ITPR3 Silent p.A190A 0.11 TCGA-37-3783-01 6 33626840 33626840 G T ITPR3 Missense_Mutation p.G191W 0.10 deleterious(0) probably_damaging(1) TCGA-37-3783-01 6 42631065 42631065 T C UBR2 Silent p.D1202D 0.21 TCGA-37-3783-01 6 42883813 42883813 C T PTCRA Silent p.A2A 0.17 TCGA-37-3783-01 6 46836746 46836746 A T GPR116 Missense_Mutation p.Y499N 0.16 deleterious(0) probably_damaging(0.986) TCGA-37-3783-01 6 47681722 47681722 C G GPR115 Missense_Mutation p.I247M 0.12 deleterious(0.02) possibly_damaging(0.707) TCGA-37-3783-01 6 47682288 47682288 C A GPR115 Nonsense_Mutation p.S436* 0.17 TCGA-37-3783-01 6 47682589 47682589 C A GPR115 Silent p.I536I 0.20 TCGA-37-3783-01 6 47682682 47682682 C T GPR115 Silent p.F567F 0.18 TCGA-37-3783-01 6 47682734 47682734 C G GPR115 Missense_Mutation p.Q585E 0.15 tolerated(0.22) possibly_damaging(0.741) TCGA-37-3783-01 6 49814356 49814356 A T CRISP1 Missense_Mutation p.H104Q 0.19 deleterious(0.04) possibly_damaging(0.609) TCGA-37-3783-01 6 50682828 50682828 G C TFAP2D Splice_Site p.X14_splice 0.16 TCGA-37-3783-01 6 52051206 52051206 C A IL17A 5'UTR 0.13 TCGA-37-3783-01 6 52993008 52993008 C T GCM1 Missense_Mutation p.R436K 0.17 deleterious(0.03) benign(0.038) TCGA-37-3783-01 6 52998945 52998945 C A GCM1 Missense_Mutation p.D85Y 0.22 deleterious(0) probably_damaging(0.987) TCGA-37-3783-01 6 66204664 66204664 G C EYS Missense_Mutation p.L214V 0.30 tolerated(0.56) benign(0.002) TCGA-37-3783-01 6 70386398 70386398 G A LMBRD1 Missense_Mutation p.H485Y 0.18 tolerated(0.47) benign(0.007) TCGA-37-3783-01 7 100677363 100677363 C T MUC17 Missense_Mutation p.P889L 0.08 unknown(0) TCGA-37-3783-01 7 100678116 100678116 C G MUC17 Nonsense_Mutation p.S1140* 0.02 TCGA-37-3783-01 7 100678753 100678753 T C MUC17 Silent p.S1352S 0.36 TCGA-37-3783-01 7 108155098 108155098 G C PNPLA8 Missense_Mutation p.Q280E 0.08 tolerated(0.12) benign(0) TCGA-37-3783-01 7 119914784 119914784 A G KCND2 Missense_Mutation p.Q33R 0.39 tolerated(0.46) benign(0) TCGA-37-3783-01 7 140534436 140534436 G C BRAF Silent p.V159V 0.25 TCGA-37-3783-01 7 140534629 140534629 C G BRAF Missense_Mutation p.R95T 0.16 tolerated(0.11) possibly_damaging(0.784) TCGA-37-3783-01 7 142459677 142459677 G C PRSS1 Missense_Mutation p.E85Q 0.09 tolerated(0.07) possibly_damaging(0.789) TCGA-37-3783-01 7 142583234 142583234 C T TRPV6 Missense_Mutation p.G10R 0.37 deleterious_low_confidence(0.03) benign(0.03) TCGA-37-3783-01 7 148080915 148080915 C T CNTNAP2 Missense_Mutation p.S1217L 0.26 tolerated(0.29) benign(0.005) TCGA-37-3783-01 7 149545106 149545106 C T ZNF862 Missense_Mutation p.S175L 0.27 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-37-3783-01 7 151093180 151093180 G T WDR86 Missense_Mutation p.H136Q 0.53 deleterious(0) probably_damaging(0.999) TCGA-37-3783-01 7 154862691 154862691 G C HTR5A Missense_Mutation p.D28H 0.45 tolerated(0.12) benign(0.007) TCGA-37-3783-01 7 17890515 17890515 C G SNX13 Missense_Mutation p.E304Q 0.20 tolerated(0.16) possibly_damaging(0.561) TCGA-37-3783-01 7 33057128 33057128 C G NT5C3A Missense_Mutation p.E211Q 0.16 deleterious(0.05) possibly_damaging(0.696) TCGA-37-3783-01 7 40037170 40037170 C T CDK13 Missense_Mutation p.P650L 0.13 deleterious(0) probably_damaging(0.998) TCGA-37-3783-01 7 4169653 4169653 C G SDK1 Silent p.L1351L 0.13 TCGA-37-3783-01 7 42065846 42065846 C A GLI3 Silent p.T398T 0.10 TCGA-37-3783-01 7 50566927 50566927 G A DDC Silent p.D265D 0.27 TCGA-37-3783-01 7 5353171 5353171 G T TNRC18 Missense_Mutation p.P2451T 0.19 benign(0.008) TCGA-37-3783-01 7 57188631 57188631 T A ZNF479 Missense_Mutation p.K164I 0.13 deleterious(0.01) benign(0.081) TCGA-37-3783-01 7 72657580 72657580 C T GTF2IRD2P1 RNA 0.13 TCGA-37-3783-01 7 75145477 75145477 C A Y_RNA 5'Flank 0.25 TCGA-37-3783-01 7 76022746 76022746 C T SRCRB4D Missense_Mutation p.E437K 0.17 deleterious(0) probably_damaging(0.929) TCGA-37-3783-01 7 7635937 7635937 C T MIOS Missense_Mutation p.S749L 0.05 tolerated(0.42) benign(0.01) TCGA-37-3783-01 7 87183183 87183183 G C ABCB1 Missense_Mutation p.S298C 0.11 tolerated(0.09) benign(0.316) TCGA-37-3783-01 7 87483531 87483531 G A SLC25A40 Silent p.F84F 0.03 TCGA-37-3783-01 7 91715626 91715626 G C AKAP9 Missense_Mutation p.E3037Q 0.10 probably_damaging(0.999) TCGA-37-3783-01 7 93113265 93113265 G T CALCR Intron 0.20 TCGA-37-3783-01 7 94045750 94045750 G T COL1A2 Missense_Mutation p.A600S 0.35 unknown(0) TCGA-37-3783-01 8 113668482 113668482 G - CSMD3 Frame_Shift_Del p.Q969Kfs*37 0.15 TCGA-37-3783-01 8 120594757 120594757 G A ENPP2 Silent p.T595T 0.17 TCGA-37-3783-01 8 124553156 124553156 G A FBXO32 Silent p.F33F 0.10 TCGA-37-3783-01 8 131146584 131146584 C G ASAP1 Missense_Mutation p.R392T 0.16 deleterious(0) probably_damaging(0.971) TCGA-37-3783-01 8 133014041 133014041 G A EFR3A Silent p.L731L 0.12 TCGA-37-3783-01 8 145006373 145006373 C T PLEC Silent p.E806E 0.05 TCGA-37-3783-01 8 145512892 145512892 C A BOP1 Missense_Mutation p.D65Y 0.14 deleterious(0.01) possibly_damaging(0.861) TCGA-37-3783-01 8 145623969 145623969 G A CPSF1 Silent p.D566D 0.09 TCGA-37-3783-01 8 3165999 3165999 G A CSMD1 Missense_Mutation p.P1220S 0.28 probably_damaging(0.999) TCGA-37-3783-01 8 37720360 37720360 G C RAB11FIP1 3'UTR 0.25 TCGA-37-3783-01 8 43171102 43171102 G A POTEA Intron 0.12 TCGA-37-3783-01 8 67578320 67578320 T C VCPIP1 Missense_Mutation p.I292V 0.15 tolerated(0.31) possibly_damaging(0.557) TCGA-37-3783-01 8 69069666 69069666 G T PREX2 Missense_Mutation p.K1447N 0.20 deleterious(0.03) benign(0.202) TCGA-37-3783-01 8 77775917 77775917 C T ZFHX4 Nonsense_Mutation p.Q3323* 0.14 TCGA-37-3783-01 9 104433333 104433333 G C GRIN3A Missense_Mutation p.S454C 0.28 deleterious(0.04) possibly_damaging(0.784) TCGA-37-3783-01 9 117031543 117031543 C G COL27A1 Missense_Mutation p.T1175S 0.24 benign(0.437) TCGA-37-3783-01 9 123922541 123922541 C A CNTRL Missense_Mutation p.L1684I 0.38 probably_damaging(0.998) TCGA-37-3783-01 9 125486937 125486937 C A OR1L4 Silent p.I223I 0.17 TCGA-37-3783-01 9 130569530 130569530 A G FPGS Missense_Mutation p.T182A 0.37 deleterious(0.04) benign(0.386) TCGA-37-3783-01 9 131151543 131151543 G A URM1 Silent p.R64R 0.33 TCGA-37-3783-01 9 136662864 136662864 C T VAV2 Missense_Mutation p.A302T 0.32 tolerated(0.38) benign(0.053) TCGA-37-3783-01 9 140083606 140083606 G A SSNA1 Silent p.V47V 0.29 TCGA-37-3783-01 9 21201638 21201638 G C IFNA7 Missense_Mutation p.S176C 0.15 deleterious(0.01) possibly_damaging(0.646) TCGA-37-3783-01 9 35689850 35689850 G A TPM2 5'UTR 0.04 TCGA-37-3783-01 9 43626670 43626670 C T SPATA31A6 Missense_Mutation p.E673K 0.25 tolerated(1) benign(0.002) TCGA-37-3783-01 9 96866628 96866628 G T PTPDC1 Missense_Mutation p.E755D 0.31 deleterious(0.01) probably_damaging(0.994) TCGA-37-3783-01 9 96866629 96866629 G T PTPDC1 Nonsense_Mutation p.E756* 0.31 TCGA-37-3783-01 X 100382613 100382613 C G CENPI Missense_Mutation p.Q345E 0.34 deleterious(0.01) benign(0.012) TCGA-37-3783-01 X 101096040 101096040 C T NXF5 Missense_Mutation p.R143Q 0.24 tolerated(0.1) benign(0.017) TCGA-37-3783-01 X 110035413 110035413 G C CHRDL1 5'UTR 0.33 TCGA-37-3783-01 X 13337077 13337077 C G ATXN3L Missense_Mutation p.S326T 0.21 deleterious_low_confidence(0.01) benign(0.09) TCGA-37-3783-01 X 134166519 134166519 G C FAM127A Missense_Mutation p.D36H 0.25 deleterious(0) possibly_damaging(0.907) TCGA-37-3783-01 X 135958712 135958712 C G RBMX Missense_Mutation p.R164T 0.34 deleterious(0.02) probably_damaging(0.977) TCGA-37-3783-01 X 142716314 142716314 A T SLITRK4 3'UTR 0.30 TCGA-37-3783-01 X 144904016 144904016 G C SLITRK2 Missense_Mutation p.A25P 0.31 tolerated(0.12) benign(0.136) TCGA-37-3783-01 X 15509309 15509309 G C PIR Silent p.V24V 0.29 TCGA-37-3783-01 X 22095795 22095795 A G PHEX Missense_Mutation p.K213R 0.33 tolerated(0.47) benign(0.067) TCGA-37-3783-01 X 23411489 23411489 G A PTCHD1 Silent p.L618L 0.39 TCGA-37-3783-01 X 47774728 47774728 C T ZNF81 Missense_Mutation p.T228I 0.30 tolerated(0.27) benign(0.109) TCGA-37-3783-01 X 54784061 54784061 G A ITIH6 Nonsense_Mutation p.Q816* 0.39 TCGA-37-3783-01 X 67937404 67937404 G C STARD8 Silent p.L216L 0.39 TCGA-37-3783-01 X 67937591 67937591 G T STARD8 Nonsense_Mutation p.E279* 0.28 TCGA-37-3783-01 X 70777517 70777517 G C OGT Missense_Mutation p.D533H 0.33 tolerated(0.11) possibly_damaging(0.662) TCGA-37-3783-01 X 73069127 73069127 G C XIST RNA 0.21 TCGA-37-3783-01 X 88008729 88008729 C A CPXCR1 Missense_Mutation p.P105H 0.31 tolerated(0.11) probably_damaging(0.979) TCGA-37-3789-01 10 105166544 105166544 G A PDCD11 Silent p.Q289Q 0.12 TCGA-37-3789-01 10 106074526 106074526 G A ITPRIP Silent p.L428L 0.24 TCGA-37-3789-01 10 115381824 115381824 A T NRAP Missense_Mutation p.L858Q 0.52 tolerated(0.3) probably_damaging(1) TCGA-37-3789-01 10 16989336 16989336 C T CUBN Missense_Mutation p.G1747D 0.08 deleterious(0.02) probably_damaging(1) TCGA-37-3789-01 10 22675703 22675703 G C SPAG6 Missense_Mutation p.D165H 0.43 deleterious(0) probably_damaging(0.988) TCGA-37-3789-01 10 33552639 33552639 G C NRP1 Nonsense_Mutation p.S198* 0.13 TCGA-37-3789-01 10 372998 372998 C T DIP2C Missense_Mutation p.R1291Q 0.32 deleterious(0) probably_damaging(0.994) TCGA-37-3789-01 10 49994734 49994734 C T WDFY4 Silent p.S1209S 0.42 TCGA-37-3789-01 10 51465352 51465352 C A AGAP7 Silent p.P368P 0.40 TCGA-37-3789-01 10 51767796 51767796 G C AGAP6 Missense_Mutation p.R182T 0.26 tolerated_low_confidence(0.58) benign(0.077) TCGA-37-3789-01 10 62631150 62631150 C T RHOBTB1 3'UTR 0.19 TCGA-37-3789-01 10 7608015 7608015 G T ITIH5 Silent p.S835S 0.41 TCGA-37-3789-01 10 7679442 7679442 C G ITIH5 Splice_Site p.X134_splice 0.49 TCGA-37-3789-01 10 90966727 90966727 G A CH25H Missense_Mutation p.A108V 0.73 tolerated(0.37) benign(0.003) TCGA-37-3789-01 10 95661025 95661025 G T SLC35G1 Silent p.G292G 0.52 TCGA-37-3789-01 10 97170424 97170424 G C SORBS1 Silent p.V307V 0.27 TCGA-37-3789-01 10 97174525 97174525 G C SORBS1 Missense_Mutation p.P179R 0.69 deleterious_low_confidence(0) benign(0.172) TCGA-37-3789-01 11 102201750 102201750 G A BIRC3 Missense_Mutation p.E368K 0.11 deleterious(0.02) benign(0.167) TCGA-37-3789-01 11 102201903 102201903 G C BIRC3 Missense_Mutation p.D419H 0.17 deleterious(0.01) possibly_damaging(0.67) TCGA-37-3789-01 11 111575815 111575831 TGGCCGCCAGCGTCGGC - SIK2 Frame_Shift_Del p.G352* 0.41 TCGA-37-3789-01 11 113570845 113570845 C T TMPRSS5 Missense_Mutation p.E17K 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.892) TCGA-37-3789-01 11 117153509 117153509 C G RNF214 Missense_Mutation p.I631M 0.15 tolerated(0.15) benign(0.204) TCGA-37-3789-01 11 1213400 1213400 G C MUC5AC RNA 0.15 TCGA-37-3789-01 11 124502053 124502053 G A TBRG1 Silent p.L385L 0.15 TCGA-37-3789-01 11 124617436 124617436 C A VSIG2 Missense_Mutation p.V327L 0.37 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-37-3789-01 11 130286835 130286835 C G ADAMTS8 Missense_Mutation p.G366R 0.49 deleterious(0) probably_damaging(1) TCGA-37-3789-01 11 134183872 134183873 GG A GLB1L3 Frame_Shift_Del p.E540Rfs*10 0.14 TCGA-37-3789-01 11 16766187 16766187 G A C11orf58 Missense_Mutation p.E35K 0.41 deleterious(0.03) possibly_damaging(0.737) TCGA-37-3789-01 11 20621047 20621047 C G SLC6A5 5'UTR 0.36 TCGA-37-3789-01 11 31099473 31099473 C T DCDC1 Splice_Site p.X746_splice 0.50 TCGA-37-3789-01 11 40137881 40137881 C A LRRC4C 5'UTR 0.45 TCGA-37-3789-01 11 4945326 4945326 T C OR51G1 Missense_Mutation p.T82A 0.52 deleterious(0) probably_damaging(0.912) TCGA-37-3789-01 11 55032762 55032762 C A TRIM48 Missense_Mutation p.P144H 0.31 deleterious(0) possibly_damaging(0.818) TCGA-37-3789-01 11 55541450 55541450 T C OR5D13 Silent p.F179F 0.40 TCGA-37-3789-01 11 56184925 56184925 G C OR5R1 Missense_Mutation p.P262A 0.53 deleterious(0) probably_damaging(0.999) TCGA-37-3789-01 11 56380709 56380709 C A OR5M1 Missense_Mutation p.K90N 0.25 tolerated(0.11) probably_damaging(0.999) TCGA-37-3789-01 11 56431846 56431846 C T OR5AR1 Missense_Mutation p.R229C 0.48 tolerated(0.05) possibly_damaging(0.544) TCGA-37-3789-01 11 59857872 59857872 G C MS4A2 Missense_Mutation p.D84H 0.47 tolerated(0.1) benign(0.011) TCGA-37-3789-01 11 60310041 60310041 C T MS4A13 Missense_Mutation p.T151I 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.642) TCGA-37-3789-01 11 64664289 64664289 C T ATG2A Missense_Mutation p.D1735N 0.29 deleterious(0) probably_damaging(0.983) TCGA-37-3789-01 11 66555707 66555707 G A C11orf80 Missense_Mutation p.M200I 0.16 tolerated(0.73) benign(0) TCGA-37-3789-01 11 76903105 76903105 C G MYO7A Missense_Mutation p.L1312V 0.12 deleterious(0) probably_damaging(0.997) TCGA-37-3789-01 11 77301476 77301476 C T AQP11 Missense_Mutation p.H147Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-37-3789-01 11 7982058 7982058 C G NLRP10 Missense_Mutation p.Q367H 0.29 deleterious(0.03) benign(0.048) TCGA-37-3789-01 11 88780767 88780767 C A GRM5 Missense_Mutation p.G92C 0.30 deleterious(0) probably_damaging(1) TCGA-37-3789-01 12 1005676 1005676 A G WNK1 Missense_Mutation p.N2008S 0.32 tolerated(0.06) probably_damaging(0.997) TCGA-37-3789-01 12 100930810 100930810 A C NR1H4 Missense_Mutation p.T316P 0.08 deleterious(0) probably_damaging(0.997) TCGA-37-3789-01 12 101490328 101490328 G C ANO4 Missense_Mutation p.E550Q 0.55 tolerated(0.5) possibly_damaging(0.857) TCGA-37-3789-01 12 103988170 103988170 A G STAB2 Intron 0.40 TCGA-37-3789-01 12 11339450 11339450 A T TAS2R42 Missense_Mutation p.C32S 0.30 tolerated(0.07) possibly_damaging(0.734) TCGA-37-3789-01 12 11461631 11461631 G C PRB4 Missense_Mutation p.P96A 0.05 tolerated_low_confidence(0.11) unknown(0) TCGA-37-3789-01 12 120139707 120139707 G A CIT Silent p.L1787L 0.26 TCGA-37-3789-01 12 133733275 133733275 G A ZNF10 Silent p.R481R 0.25 TCGA-37-3789-01 12 22208428 22208428 G A CMAS Missense_Mutation p.C148Y 0.33 deleterious(0) probably_damaging(0.992) TCGA-37-3789-01 12 24102581 24102581 C T SOX5 5'UTR 0.30 TCGA-37-3789-01 12 42853690 42853690 G T PRICKLE1 Missense_Mutation p.P806H 0.28 tolerated(0.25) benign(0.235) TCGA-37-3789-01 12 49441761 49441761 C A KMT2D Missense_Mutation p.C1408F 0.35 probably_damaging(0.999) TCGA-37-3789-01 12 56115129 56115129 G C RDH5 Missense_Mutation p.R54P 0.28 deleterious(0.02) benign(0.153) TCGA-37-3789-01 12 56645804 56645804 G A ANKRD52 Silent p.A529A 0.32 TCGA-37-3789-01 12 57843575 57843575 A T INHBC Missense_Mutation p.I277L 0.26 deleterious(0.04) benign(0.044) TCGA-37-3789-01 12 62954451 62954451 T C MON2 Missense_Mutation p.V1197A 0.42 tolerated_low_confidence(0.11) benign(0.002) TCGA-37-3789-01 12 70933760 70933760 C A PTPRB Missense_Mutation p.R1879S 0.32 deleterious(0) probably_damaging(0.962) TCGA-37-3789-01 12 78225411 78225411 C A NAV3 Missense_Mutation p.A57E 0.33 tolerated_low_confidence(0.06) benign(0.065) TCGA-37-3789-01 12 85255533 85255533 C A SLC6A15 Missense_Mutation p.G691C 0.36 tolerated_low_confidence(0.18) probably_damaging(0.914) TCGA-37-3789-01 12 88479931 88479931 G C CEP290 Nonsense_Mutation p.S1441* 0.36 TCGA-37-3789-01 12 92539232 92539232 C G BTG1 Missense_Mutation p.R27P 0.17 deleterious(0) possibly_damaging(0.84) TCGA-37-3789-01 12 9393012 9393012 G T LINC00987 RNA 0.20 TCGA-37-3789-01 13 112722129 112722129 C T SOX1 Missense_Mutation p.R53W 0.46 deleterious(0) probably_damaging(1) TCGA-37-3789-01 13 25835837 25835837 C G MTMR6 Missense_Mutation p.R232P 0.33 tolerated(0.43) benign(0.003) TCGA-37-3789-01 13 28893635 28893635 T A FLT1 Missense_Mutation p.I1071F 0.22 deleterious(0) probably_damaging(1) TCGA-37-3789-01 13 39621263 39621263 C T NHLRC3 Silent p.F255F 0.33 TCGA-37-3789-01 13 46730703 46730703 C A LCP1 Nonsense_Mutation p.E121* 0.24 TCGA-37-3789-01 13 48563071 48563071 C G SUCLA2 Missense_Mutation p.R106T 0.33 deleterious(0) probably_damaging(0.999) TCGA-37-3789-01 13 49885033 49885033 C G CAB39L Missense_Mutation p.E311Q 0.27 deleterious(0) possibly_damaging(0.799) TCGA-37-3789-01 14 100847918 100847918 G T WDR25 Missense_Mutation p.E219D 0.56 tolerated(0.26) possibly_damaging(0.771) TCGA-37-3789-01 14 101500125 101500125 C T MIR495 RNA 0.13 TCGA-37-3789-01 14 102276371 102276371 G A PPP2R5C Intron 0.23 TCGA-37-3789-01 14 102515002 102515002 G T DYNC1H1 Silent p.V4456V 0.24 TCGA-37-3789-01 14 102800977 102800977 G A ZNF839 Silent p.L501L 0.34 TCGA-37-3789-01 14 105517538 105517538 C T GPR132 Silent p.T312T 0.24 TCGA-37-3789-01 14 106361491 106361491 G A IGHD5-18 5'Flank 0.43 TCGA-37-3789-01 14 19377713 19377713 C A OR11H12 Silent p.I40I 0.52 TCGA-37-3789-01 14 21884067 21884067 C T CHD8 Splice_Site p.X573_splice 0.21 TCGA-37-3789-01 14 45658053 45658053 G A FANCM Missense_Mutation p.E1610K 0.22 deleterious(0.04) probably_damaging(0.989) TCGA-37-3789-01 14 65056048 65056048 C A PPP1R36 Missense_Mutation p.P421T 0.27 deleterious_low_confidence(0.02) benign(0.168) TCGA-37-3789-01 14 92549498 92549498 C A ATXN3 Nonsense_Mutation p.E194* 0.25 TCGA-37-3789-01 15 100331935 100331935 G A AC090825.1 5'Flank 0.16 TCGA-37-3789-01 15 101970216 101970216 C T PCSK6 Missense_Mutation p.R236Q 0.12 tolerated(0.18) probably_damaging(0.954) TCGA-37-3789-01 15 24923588 24923588 G A NPAP1 Silent p.G858G 0.28 TCGA-37-3789-01 15 33833011 33833011 G T RYR3 Missense_Mutation p.G189V 0.31 possibly_damaging(0.551) TCGA-37-3789-01 15 48539204 48539204 A T SLC12A1 Missense_Mutation p.K517N 0.26 deleterious(0) probably_damaging(0.999) TCGA-37-3789-01 15 49867260 49867260 G A FAM227B Missense_Mutation p.S198F 0.40 deleterious(0) probably_damaging(0.999) TCGA-37-3789-01 15 63932475 63932475 C A HERC1 Missense_Mutation p.W3926L 0.29 probably_damaging(0.993) TCGA-37-3789-01 15 64418374 64418374 C G SNX1 Missense_Mutation p.Q203E 0.21 tolerated(0.24) benign(0.084) TCGA-37-3789-01 15 72582506 72582507 - A CELF6 Frame_Shift_Ins p.E162Vfs*9 0.32 TCGA-37-3789-01 15 81654635 81654635 C T TMC3 Missense_Mutation p.R107Q 0.46 tolerated(0.16) benign(0.103) TCGA-37-3789-01 15 85405880 85405880 G A ALPK3 Missense_Mutation p.E1584K 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-37-3789-01 15 90260146 90260146 C T WDR93 Missense_Mutation p.S254F 0.14 deleterious(0.01) benign(0.131) TCGA-37-3789-01 15 99903453 99903453 G - LRRC28 Frame_Shift_Del p.A339Qfs*28 0.32 TCGA-37-3789-01 16 17292262 17292262 A C XYLT1 Missense_Mutation p.Y366D 0.24 deleterious(0) probably_damaging(0.998) TCGA-37-3789-01 16 19475265 19475265 C G TMC5 Missense_Mutation p.F468L 0.28 tolerated(0.3) benign(0.32) TCGA-37-3789-01 16 20548587 20548587 G A ACSM2B Missense_Mutation p.A576V 0.28 deleterious_low_confidence(0.01) benign(0.039) TCGA-37-3789-01 16 48212568 48212568 C A ABCC11 Silent p.R1096R 0.27 TCGA-37-3789-01 16 50759418 50759418 C G NOD2 Silent p.L967L 0.36 TCGA-37-3789-01 16 55719166 55719166 C G SLC6A2 Silent p.L252L 0.22 TCGA-37-3789-01 16 61858997 61858997 G A CDH8 Missense_Mutation p.H252Y 0.48 deleterious(0) probably_damaging(0.994) TCGA-37-3789-01 16 71483756 71483756 C A ZNF23 Nonsense_Mutation p.E58* 0.38 TCGA-37-3789-01 16 72845851 72845851 G C ZFHX3 Missense_Mutation p.L1206V 0.26 benign(0.275) TCGA-37-3789-01 16 847697 847697 G C CHTF18 Missense_Mutation p.E913Q 0.27 deleterious(0.01) possibly_damaging(0.634) TCGA-37-3789-01 16 89865534 89865534 C T FANCA Intron 0.23 TCGA-37-3789-01 16 9857084 9857084 G T GRIN2A Nonsense_Mutation p.Y1439* 0.25 TCGA-37-3789-01 17 10542913 10542913 G T MYH3 Silent p.A963A 0.33 TCGA-37-3789-01 17 12897091 12897091 C T ELAC2 Silent p.L722L 0.44 TCGA-37-3789-01 17 17127237 17127237 T C FLCN Missense_Mutation p.K206R 0.67 tolerated(0.16) benign(0.006) TCGA-37-3789-01 17 18250933 18250933 C A SHMT1 Silent p.V132V 0.56 TCGA-37-3789-01 17 27064326 27064326 C G NEK8 Missense_Mutation p.N207K 0.40 deleterious(0) probably_damaging(0.943) TCGA-37-3789-01 17 36734771 36734771 C A SRCIN1 Missense_Mutation p.R99L 0.52 tolerated(0.11) benign(0.05) TCGA-37-3789-01 17 48278790 48278790 C T COL1A1 Missense_Mutation p.E29K 0.23 unknown(0) TCGA-37-3789-01 17 50008392 50008392 G T CA10 Missense_Mutation p.D79E 0.31 deleterious(0.02) benign(0.019) TCGA-37-3789-01 17 58538126 58538126 G A APPBP2 Missense_Mutation p.S320L 0.15 deleterious(0.04) benign(0.084) TCGA-37-3789-01 17 72443069 72443069 G T GPRC5C Missense_Mutation p.A455S 0.13 tolerated_low_confidence(0.08) probably_damaging(0.999) TCGA-37-3789-01 17 72840421 72840421 G A GRIN2C Silent p.F859F 0.19 TCGA-37-3789-01 17 7579494 7579494 T A TP53 Nonsense_Mutation p.R65* 0.42 TCGA-37-3789-01 17 77077136 77077136 G A ENGASE Missense_Mutation p.E285K 0.31 tolerated(0.07) probably_damaging(0.986) TCGA-37-3789-01 17 77707323 77707323 C G ENPP7 Missense_Mutation p.H91D 0.24 deleterious(0) probably_damaging(1) TCGA-37-3789-01 17 78093138 78093138 G T GAA 3'UTR 0.34 TCGA-37-3789-01 17 8738701 8738701 C T PIK3R6 Silent p.A178A 0.29 TCGA-37-3789-01 18 12358705 12358705 T A AFG3L2 Silent p.P330P 0.10 TCGA-37-3789-01 18 54815143 54815143 G C BOD1L2 3'UTR 0.39 TCGA-37-3789-01 18 56202524 56202524 A G ALPK2 Missense_Mutation p.I1632T 0.22 tolerated(0.86) benign(0.007) TCGA-37-3789-01 18 70502537 70502537 A T NETO1 Intron 0.21 TCGA-37-3789-01 18 74962936 74962936 C A GALR1 Silent p.S144S 0.44 TCGA-37-3789-01 18 76753968 76753968 G A SALL3 Silent p.S659S 0.50 TCGA-37-3789-01 19 15349944 15349944 C A BRD4 Missense_Mutation p.E1236D 0.29 benign(0.217) TCGA-37-3789-01 19 21990893 21990893 G C ZNF43 Missense_Mutation p.P649R 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-37-3789-01 19 23329240 23329240 C G ZNF730 Nonsense_Mutation p.S465* 0.27 TCGA-37-3789-01 19 23836935 23836935 T A ZNF675 Missense_Mutation p.Q267L 0.18 tolerated(0.39) benign(0.109) TCGA-37-3789-01 19 23927658 23927658 C A ZNF681 Missense_Mutation p.G232C 0.29 deleterious(0.01) probably_damaging(0.995) TCGA-37-3789-01 19 36245203 36245203 G C LIN37 Missense_Mutation p.W214C 0.17 deleterious(0) probably_damaging(0.923) TCGA-37-3789-01 19 36335228 36335228 G C NPHS1 Silent p.L688L 0.19 TCGA-37-3789-01 19 36832139 36832139 C T ZFP14 Missense_Mutation p.E197K 0.22 tolerated(0.09) probably_damaging(0.998) TCGA-37-3789-01 19 3738570 3738570 C G TJP3 Missense_Mutation p.F443L 0.37 deleterious(0.02) probably_damaging(0.993) TCGA-37-3789-01 19 3738989 3738989 C T TJP3 Silent p.F505F 0.54 TCGA-37-3789-01 19 37619911 37619911 A G ZNF420 Missense_Mutation p.Y673C 0.20 tolerated(1) benign(0) TCGA-37-3789-01 19 39950220 39950220 C G SUPT5H Silent p.V182V 0.31 TCGA-37-3789-01 19 43922432 43922432 T A TEX101 Missense_Mutation p.H229Q 0.32 tolerated(0.29) benign(0.003) TCGA-37-3789-01 19 44418134 44418134 G C ZNF45 Nonsense_Mutation p.S485* 0.24 TCGA-37-3789-01 19 44934257 44934257 G A ZNF229 Silent p.F233F 0.25 TCGA-37-3789-01 19 45885827 45885827 C A PPP1R13L Silent p.A802A 0.27 TCGA-37-3789-01 19 49657014 49657014 G C HRC Missense_Mutation p.S494C 0.12 deleterious(0) probably_damaging(0.99) TCGA-37-3789-01 19 53302908 53302908 C A ZNF28 3'UTR 0.10 TCGA-37-3789-01 19 53302992 53302992 C A ZNF28 Missense_Mutation p.Q702H 0.33 tolerated(0.57) benign(0.032) TCGA-37-3789-01 19 53571486 53571486 C - ZNF160 Frame_Shift_Del p.A769Pfs*4 0.32 TCGA-37-3789-01 19 55045040 55045040 C T KIR3DX1 Missense_Mutation p.R54W 0.11 deleterious(0.02) possibly_damaging(0.86) TCGA-37-3789-01 19 55349259 55349259 G A KIR2DS4 Missense_Mutation p.C100Y 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-37-3789-01 19 56370258 56370258 G T NLRP4 Missense_Mutation p.G500V 0.40 deleterious(0.03) possibly_damaging(0.677) TCGA-37-3789-01 19 56390162 56390162 T G NLRP4 Missense_Mutation p.L900W 0.33 deleterious(0) probably_damaging(0.998) TCGA-37-3789-01 19 9449884 9449884 G C ZNF559 Missense_Mutation p.E17Q 0.07 deleterious(0.05) probably_damaging(0.913) TCGA-37-3789-01 1 109271508 109271508 G T FNDC7 Missense_Mutation p.V542L 0.33 tolerated(0.06) benign(0.005) TCGA-37-3789-01 1 113245725 113245725 C A RHOC Missense_Mutation p.W58L 0.10 deleterious(0) probably_damaging(0.984) TCGA-37-3789-01 1 117556285 117556285 C G CD101 Missense_Mutation p.L367V 0.25 tolerated(1) benign(0.006) TCGA-37-3789-01 1 118727720 118727721 - G SPAG17 Frame_Shift_Ins p.S21Lfs*25 0.25 TCGA-37-3789-01 1 12921252 12921252 C A PRAMEF2 Missense_Mutation p.A348D 0.27 deleterious(0) benign(0.342) TCGA-37-3789-01 1 12942116 12942116 C T PRAMEF4 Missense_Mutation p.G145E 0.22 tolerated(1) benign(0.057) TCGA-37-3789-01 1 144873931 144873931 T C PDE4DIP Missense_Mutation p.I1676V 0.12 tolerated(0.67) benign(0.005) TCGA-37-3789-01 1 145531022 145531022 G T ITGA10 Missense_Mutation p.A252S 0.27 deleterious(0) probably_damaging(0.951) TCGA-37-3789-01 1 149761656 149761656 C T FCGR1A Silent p.L202L 0.30 TCGA-37-3789-01 1 149905510 149905510 C G MTMR11 Missense_Mutation p.D285H 0.32 deleterious(0) benign(0.199) TCGA-37-3789-01 1 155239429 155239429 G T CLK2 Missense_Mutation p.S83R 0.19 tolerated(0.07) possibly_damaging(0.836) TCGA-37-3789-01 1 156954202 156954202 T C ARHGEF11 Missense_Mutation p.Q51R 0.27 deleterious(0) possibly_damaging(0.839) TCGA-37-3789-01 1 157504393 157504393 C T FCRL5 Intron 0.20 TCGA-37-3789-01 1 157504490 157504490 G A FCRL5 Missense_Mutation p.T532I 0.22 tolerated(0.09) benign(0.395) TCGA-37-3789-01 1 158914791 158914791 C T PYHIN1 Nonsense_Mutation p.Q440* 0.25 TCGA-37-3789-01 1 166908752 166908752 T A ILDR2 Silent p.P185P 0.30 TCGA-37-3789-01 1 186294905 186294905 G C TPR Missense_Mutation p.Q2035E 0.22 benign(0.01) TCGA-37-3789-01 1 186324872 186324872 T C TPR Silent p.A639A 0.39 TCGA-37-3789-01 1 19403254 19403254 G A UBR4 Missense_Mutation p.S5156L 0.29 probably_damaging(0.966) TCGA-37-3789-01 1 19492186 19492186 T A UBR4 Missense_Mutation p.Q1392L 0.25 benign(0.027) TCGA-37-3789-01 1 196882045 196882045 T A CFHR4 Silent p.I390I 0.33 TCGA-37-3789-01 1 201859588 201859588 G A SHISA4 Silent p.K84K 0.25 TCGA-37-3789-01 1 203036822 203036822 G C PPFIA4 Splice_Site p.X511_splice 0.36 TCGA-37-3789-01 1 212558649 212558649 G A TMEM206 Silent p.I215I 0.11 TCGA-37-3789-01 1 216052233 216052233 G A USH2A Missense_Mutation p.P2811S 0.36 possibly_damaging(0.685) TCGA-37-3789-01 1 216850693 216850693 C A ESRRG Missense_Mutation p.G71V 0.32 deleterious(0) possibly_damaging(0.9) TCGA-37-3789-01 1 232607249 232607249 T C SIPA1L2 Missense_Mutation p.N704S 0.33 deleterious(0) probably_damaging(0.999) TCGA-37-3789-01 1 232942333 232942333 C G MAP10 Missense_Mutation p.Q522E 0.32 tolerated(0.25) probably_damaging(0.995) TCGA-37-3789-01 1 2340172 2340172 C G PEX10 Missense_Mutation p.D107H 0.23 tolerated(0.06) possibly_damaging(0.62) TCGA-37-3789-01 1 236727825 236727825 G C HEATR1 Silent p.L1524L 0.30 TCGA-37-3789-01 1 236917316 236917316 C T ACTN2 Missense_Mutation p.R637C 0.38 deleterious(0) probably_damaging(0.961) TCGA-37-3789-01 1 236973829 236973829 C G MTR Missense_Mutation p.L146V 0.28 tolerated(0.16) benign(0.026) TCGA-37-3789-01 1 237167417 237167417 G C MT1HL1 3'UTR 0.40 TCGA-37-3789-01 1 240341241 240341241 G T FMN2 Missense_Mutation p.W601C 0.41 unknown(0) TCGA-37-3789-01 1 241712164 241712164 G C KMO Missense_Mutation p.R30S 0.21 deleterious(0) probably_damaging(0.911) TCGA-37-3789-01 1 248436650 248436650 A C OR2T33 Missense_Mutation p.L156R 0.15 deleterious(0) possibly_damaging(0.529) TCGA-37-3789-01 1 248525429 248525429 C T OR2T4 Silent p.L183L 0.25 TCGA-37-3789-01 1 248685389 248685389 G A OR2G6 Missense_Mutation p.A148T 0.32 deleterious(0.05) probably_damaging(0.938) TCGA-37-3789-01 1 31188829 31188829 C A MATN1 Missense_Mutation p.K378N 0.30 deleterious(0.05) probably_damaging(0.995) TCGA-37-3789-01 1 38338764 38338764 G C INPP5B Missense_Mutation p.D675E 0.38 tolerated(0.22) benign(0.007) TCGA-37-3789-01 1 42045798 42045798 C T HIVEP3 Silent p.K1557K 0.30 TCGA-37-3789-01 1 44056897 44056897 G A PTPRF Missense_Mutation p.E402K 0.50 tolerated(0.1) benign(0.109) TCGA-37-3789-01 1 44395929 44395929 C T ST3GAL3 3'UTR 0.30 TCGA-37-3789-01 1 45821049 45821049 G C TESK2 Missense_Mutation p.L156V 0.23 deleterious(0) probably_damaging(0.977) TCGA-37-3789-01 1 53554564 53554564 C A SLC1A7 Silent p.R483R 0.32 TCGA-37-3789-01 1 59844452 59844452 G A FGGY Missense_Mutation p.G166E 0.48 tolerated(0.07) probably_damaging(0.931) TCGA-37-3789-01 1 65897651 65897651 C G LEPROT 3'UTR 0.40 TCGA-37-3789-01 1 91778938 91778938 G A HFM1 Missense_Mutation p.S1120L 0.28 tolerated(0.11) benign(0.009) TCGA-37-3789-01 20 13756704 13756704 C A ESF1 Nonsense_Mutation p.E284* 0.27 TCGA-37-3789-01 20 16347905 16347905 G C KIF16B Missense_Mutation p.F1355L 0.29 tolerated_low_confidence(0.77) benign(0) TCGA-37-3789-01 20 17208026 17208026 G C PCSK2 Missense_Mutation p.E26Q 0.20 tolerated(0.48) benign(0.001) TCGA-37-3789-01 20 31577469 31577469 G T SUN5 Missense_Mutation p.H190Q 0.23 tolerated(1) benign(0.001) TCGA-37-3789-01 20 43851673 43851673 C A SEMG2 Nonsense_Mutation p.S467* 0.38 TCGA-37-3789-01 20 44586512 44586512 G C ZNF335 Missense_Mutation p.S770C 0.26 deleterious(0.01) benign(0.438) TCGA-37-3789-01 20 49626715 49626715 T A KCNG1 Missense_Mutation p.Q54L 0.50 tolerated(0.29) benign(0.009) TCGA-37-3789-01 20 55953067 55953067 A G RAE1 Splice_Site p.X341_splice 0.24 TCGA-37-3789-01 20 58322835 58322835 C A PHACTR3 Silent p.G101G 0.41 TCGA-37-3789-01 21 15537643 15537643 A T LIPI Missense_Mutation p.C289S 0.35 deleterious(0) probably_damaging(0.999) TCGA-37-3789-01 21 36252918 36252918 G A RUNX1 Silent p.T148T 0.47 TCGA-37-3789-01 21 46011251 46011251 G T KRTAP10-6 3'UTR 0.50 TCGA-37-3789-01 21 48071824 48071824 T G PRMT2 Intron 0.10 TCGA-37-3789-01 22 17072852 17072852 T C CCT8L2 Missense_Mutation p.S197G 0.25 tolerated(0.23) benign(0.011) TCGA-37-3789-01 22 32598391 32598391 G T RFPL2 Silent p.S16S 0.27 TCGA-37-3789-01 22 38247364 38247364 A G EIF3L Missense_Mutation p.N54D 0.18 tolerated(0.23) benign(0.003) TCGA-37-3789-01 22 50277561 50277561 G T ZBED4 Missense_Mutation p.G84V 0.33 deleterious_low_confidence(0) possibly_damaging(0.856) TCGA-37-3789-01 2 130725823 130725823 G - RAB6C-AS1 RNA 0.27 TCGA-37-3789-01 2 133618158 133618158 C G NCKAP5 Missense_Mutation p.L238F 0.56 deleterious(0) probably_damaging(1) TCGA-37-3789-01 2 136872540 136872541 - A CXCR4 Frame_Shift_Ins p.V324Cfs*24 0.25 TCGA-37-3789-01 2 152977291 152977291 G C STAM2 Missense_Mutation p.P459A 0.09 tolerated_low_confidence(0.25) benign(0.002) TCGA-37-3789-01 2 155555379 155555379 A T KCNJ3 Missense_Mutation p.Q31L 0.17 tolerated(0.25) unknown(0) TCGA-37-3789-01 2 158622653 158622653 A G ACVR1 Silent p.I282I 0.20 TCGA-37-3789-01 2 166152336 166152336 G - SCN2A Frame_Shift_Del p.A2Hfs*91 0.27 TCGA-37-3789-01 2 168114765 168114765 T A XIRP2 3'UTR 0.35 TCGA-37-3789-01 2 189599468 189599468 G A DIRC1 Silent p.I60I 0.18 TCGA-37-3789-01 2 202002391 202002391 G A CFLAR Intron 0.36 TCGA-37-3789-01 2 210559534 210559534 A G MAP2 Silent p.P880P 0.19 TCGA-37-3789-01 2 219688495 219688495 A T PRKAG3 Missense_Mutation p.L487H 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-37-3789-01 2 219878615 219878615 C G CCDC108 Missense_Mutation p.E1252Q 0.18 tolerated(0.18) benign(0.143) TCGA-37-3789-01 2 220115077 220115077 T C TUBA4A Silent p.E448E 0.27 TCGA-37-3789-01 2 223066606 223066606 G C PAX3 Intron 0.10 TCGA-37-3789-01 2 226446968 226446968 T G NYAP2 Missense_Mutation p.L279V 0.26 tolerated(0.57) benign(0.003) TCGA-37-3789-01 2 231404037 231404037 G T SP100 Missense_Mutation p.C717F 0.23 deleterious(0) possibly_damaging(0.506) TCGA-37-3789-01 2 237172907 237172907 C G ASB18 Missense_Mutation p.D28H 0.34 deleterious(0.05) benign(0.417) TCGA-37-3789-01 2 32738083 32738083 C T BIRC6 Missense_Mutation p.P3477L 0.30 benign(0.09) TCGA-37-3789-01 2 32740349 32740349 G C BIRC6 Missense_Mutation p.E3621Q 0.20 benign(0.005) TCGA-37-3789-01 2 44099383 44099383 C T ABCG8 Silent p.T383T 0.21 TCGA-37-3789-01 2 45169910 45169910 G C SIX3 Missense_Mutation p.E223Q 0.35 tolerated(0.07) probably_damaging(0.999) TCGA-37-3789-01 2 55529038 55529038 A T CCDC88A Missense_Mutation p.F1547I 0.32 tolerated(0.4) benign(0.005) TCGA-37-3789-01 2 55771501 55771501 T C CCDC104 Missense_Mutation p.V308A 0.22 tolerated(0.78) benign(0.001) TCGA-37-3789-01 2 63631216 63631216 T C WDPCP Missense_Mutation p.R468G 0.27 tolerated(0.44) benign(0.02) TCGA-37-3789-01 2 70165444 70165444 G C MXD1 3'UTR 0.27 TCGA-37-3789-01 2 73717530 73717530 C G ALMS1 Nonsense_Mutation p.S2814* 0.13 TCGA-37-3789-01 2 87140952 87140952 G A RGPD1 5'Flank 0.29 TCGA-37-3789-01 2 96954772 96954772 C G SNRNP200 Intron 0.14 TCGA-37-3789-01 3 113955552 113955552 G C ZNF80 Missense_Mutation p.R124G 0.26 deleterious(0) benign(0.068) TCGA-37-3789-01 3 119530414 119530414 G C NR1I2 Missense_Mutation p.E159D 0.23 deleterious(0.03) benign(0.055) TCGA-37-3789-01 3 120876471 120876471 C G STXBP5L Missense_Mutation p.H292D 0.12 deleterious(0) possibly_damaging(0.703) TCGA-37-3789-01 3 130463401 130463401 G A PIK3R4 Missense_Mutation p.P221L 0.22 tolerated(0.22) benign(0.003) TCGA-37-3789-01 3 133478162 133478162 G T TF Missense_Mutation p.A398S 0.46 tolerated(0.23) probably_damaging(0.972) TCGA-37-3789-01 3 133666218 133666218 A G SLCO2A1 Missense_Mutation p.S393P 0.19 tolerated(0.07) benign(0.077) TCGA-37-3789-01 3 135870092 135870092 C A MSL2 Missense_Mutation p.S544I 0.14 tolerated(0.14) benign(0.052) TCGA-37-3789-01 3 137843236 137843236 C T A4GNT Missense_Mutation p.R298Q 0.21 tolerated(0.06) benign(0.109) TCGA-37-3789-01 3 138183263 138183263 C G ESYT3 Nonsense_Mutation p.S331* 0.34 TCGA-37-3789-01 3 142116193 142116193 C G XRN1 Missense_Mutation p.E773Q 0.17 tolerated(0.22) benign(0.04) TCGA-37-3789-01 3 147106532 147106532 G T ZIC4 3'UTR 0.26 TCGA-37-3789-01 3 30842474 30842474 C T GADL1 Missense_Mutation p.R386K 0.45 deleterious(0) probably_damaging(1) TCGA-37-3789-01 3 32574570 32574570 C G DYNC1LI1 Missense_Mutation p.D330H 0.24 tolerated(0.1) benign(0.024) TCGA-37-3789-01 3 39306949 39306949 G A CX3CR1 Missense_Mutation p.A383V 0.46 tolerated(0.11) benign(0.009) TCGA-37-3789-01 3 51400047 51400047 G C DOCK3 Silent p.L1745L 0.41 TCGA-37-3789-01 3 62357706 62357706 C T FEZF2 Missense_Mutation p.E280K 0.38 deleterious(0.03) benign(0.094) TCGA-37-3789-01 4 114280136 114280136 G T ANK2 Missense_Mutation p.R3454S 0.29 benign(0.008) TCGA-37-3789-01 4 115544119 115544119 C A UGT8 Missense_Mutation p.P28Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-37-3789-01 4 141578722 141578722 C G TBC1D9 Missense_Mutation p.L722F 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-37-3789-01 4 151604779 151604779 T C LRBA Missense_Mutation p.T1949A 0.26 tolerated(0.09) probably_damaging(0.996) TCGA-37-3789-01 4 184233499 184233499 A G WWC2 Silent p.E1130E 0.45 TCGA-37-3789-01 4 187454806 187454806 C - RP11-215A19.2 Intron 0.33 TCGA-37-3789-01 4 189068016 189068016 C G TRIML1 Silent p.L299L 0.38 TCGA-37-3789-01 4 40123493 40123493 A G N4BP2 Silent p.L1254L 0.49 TCGA-37-3789-01 4 47408751 47408751 C A GABRB1 Silent p.T296T 0.30 TCGA-37-3789-01 4 5733382 5733382 G A EVC Silent p.E205E 0.40 TCGA-37-3789-01 4 69313197 69313197 C G TMPRSS11E 5'UTR 0.11 TCGA-37-3789-01 4 70156481 70156481 C T UGT2B28 Missense_Mutation p.S421L 0.27 deleterious(0) probably_damaging(0.929) TCGA-37-3789-01 4 75040299 75040299 T A MTHFD2L Missense_Mutation p.W74R 0.69 deleterious(0.02) benign(0.056) TCGA-37-3789-01 4 75040300 75040300 G T MTHFD2L Missense_Mutation p.W74L 0.73 tolerated(0.47) benign(0.034) TCGA-37-3789-01 4 76582779 76582779 C G G3BP2 Missense_Mutation p.E105Q 0.08 deleterious(0.02) benign(0.031) TCGA-37-3789-01 4 76782018 76782018 C A PPEF2 Missense_Mutation p.M688I 0.08 tolerated(0.08) probably_damaging(0.985) TCGA-37-3789-01 4 8226901 8226901 G A SH3TC1 Splice_Site p.X415_splice 0.47 TCGA-37-3789-01 4 88035792 88035792 C G AFF1 Missense_Mutation p.Q603E 0.39 tolerated(0.28) unknown(0) TCGA-37-3789-01 4 88903701 88903701 G A SPP1 Missense_Mutation p.G200S 0.28 deleterious(0.05) probably_damaging(0.992) TCGA-37-3789-01 4 95204388 95204388 A T SMARCAD1 Missense_Mutation p.D950V 0.35 deleterious(0) probably_damaging(1) TCGA-37-3789-01 5 112228405 112228405 C G ZRSR1 Missense_Mutation p.Q357E 0.22 tolerated(0.13) benign(0.028) TCGA-37-3789-01 5 112870077 112870077 G A YTHDC2 Silent p.T306T 0.37 TCGA-37-3789-01 5 114506856 114506856 T A TRIM36 Intron 0.32 TCGA-37-3789-01 5 137520077 137520077 C G KIF20A Nonsense_Mutation p.S501* 0.24 TCGA-37-3789-01 5 13766275 13766275 G A DNAH5 Missense_Mutation p.S3304L 0.27 benign(0.005) TCGA-37-3789-01 5 13919404 13919404 C T DNAH5 Missense_Mutation p.E286K 0.22 possibly_damaging(0.621) TCGA-37-3789-01 5 140242621 140242621 C G AC005609.1 Missense_Mutation p.D119H 0.21 tolerated_low_confidence(0.11) probably_damaging(0.934) TCGA-37-3789-01 5 140476341 140476341 C A PCDHB2 Missense_Mutation p.A656D 0.35 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-37-3789-01 5 140596022 140596022 C A PCDHB13 Missense_Mutation p.P776H 0.37 tolerated_low_confidence(0.21) benign(0.006) TCGA-37-3789-01 5 140746176 140746176 C G PCDHGA5 Missense_Mutation p.T760S 0.28 deleterious_low_confidence(0) possibly_damaging(0.521) TCGA-37-3789-01 5 149925029 149925029 G A NDST1 Missense_Mutation p.R709Q 0.27 deleterious(0) probably_damaging(0.997) TCGA-37-3789-01 5 150496742 150496742 C A ANXA6 Splice_Site p.X507_splice 0.28 TCGA-37-3789-01 5 164028056 164028056 C A CTC-340A15.2 RNA 0.36 TCGA-37-3789-01 5 168199840 168199840 G A SLIT3 Nonsense_Mutation p.R469* 0.25 TCGA-37-3789-01 5 180630491 180630491 G C TRIM7 Intron 0.32 TCGA-37-3789-01 5 19483619 19483619 C A CDH18 Missense_Mutation p.R558L 0.19 deleterious(0.02) possibly_damaging(0.565) TCGA-37-3789-01 5 23527264 23527264 G A PRDM9 Silent p.E689E 0.13 TCGA-37-3789-01 5 43487154 43487154 A G C5orf34 Missense_Mutation p.S594P 0.43 tolerated(0.07) possibly_damaging(0.864) TCGA-37-3789-01 5 43506193 43506193 C T C5orf34 Missense_Mutation p.E197K 0.36 tolerated(0.21) benign(0.057) TCGA-37-3789-01 5 50123778 50123778 C T PARP8 Nonsense_Mutation p.Q660* 0.37 TCGA-37-3789-01 5 60188859 60188859 G A ERCC8 Intron 0.29 TCGA-37-3789-01 6 100403965 100403965 C T MCHR2 Nonsense_Mutation p.W20* 0.34 TCGA-37-3789-01 6 12121781 12121781 C T HIVEP1 Missense_Mutation p.P585S 0.63 tolerated(0.1) benign(0.013) TCGA-37-3789-01 6 132643820 132643820 G T MOXD1 Missense_Mutation p.P435T 0.32 deleterious(0) probably_damaging(1) TCGA-37-3789-01 6 143081135 143081135 C G HIVEP2 Missense_Mutation p.R2097T 0.37 tolerated(0.11) probably_damaging(0.996) TCGA-37-3789-01 6 148869683 148869683 G C SASH1 Missense_Mutation p.E1245Q 0.23 tolerated_low_confidence(0.06) possibly_damaging(0.744) TCGA-37-3789-01 6 154744078 154744078 C T CNKSR3 Missense_Mutation p.E257K 0.17 deleterious(0) probably_damaging(1) TCGA-37-3789-01 6 155579120 155579120 G C TFB1M Missense_Mutation p.I297M 0.30 tolerated(0.4) benign(0.029) TCGA-37-3789-01 6 160953575 160953575 A G LPA Silent p.T1983T 0.30 TCGA-37-3789-01 6 168352586 168352586 C T MLLT4 Silent p.L1511L 0.31 TCGA-37-3789-01 6 24178827 24178827 C A DCDC2 Nonsense_Mutation p.G353* 0.54 TCGA-37-3789-01 6 27368847 27368847 G A ZNF391 Missense_Mutation p.R233H 0.65 tolerated(0.22) benign(0.001) TCGA-37-3789-01 6 27778110 27778110 A T HIST1H3H Missense_Mutation p.S87C 0.56 deleterious_low_confidence(0) possibly_damaging(0.879) TCGA-37-3789-01 6 32487330 32487330 C T HLA-DRB5 Missense_Mutation p.E157K 0.23 tolerated(0.41) probably_damaging(0.999) TCGA-37-3789-01 6 32549517 32549517 C T HLA-DRB1 Missense_Mutation p.E157K 0.17 tolerated(0.41) probably_damaging(0.965) TCGA-37-3789-01 6 33139299 33139299 A T COL11A2 Missense_Mutation p.V982E 0.24 possibly_damaging(0.607) TCGA-37-3789-01 6 33422975 33422975 C G ZBTB9 Missense_Mutation p.S33C 0.47 deleterious(0.04) benign(0.353) TCGA-37-3789-01 6 42932076 42932076 G T PEX6 Nonsense_Mutation p.C980* 0.16 TCGA-37-3789-01 6 44279966 44279966 C T AARS2 Missense_Mutation p.R93Q 0.34 tolerated(0.06) benign(0.421) TCGA-37-3789-01 6 49587042 49587042 C G RHAG Missense_Mutation p.G64A 0.52 deleterious(0) probably_damaging(0.996) TCGA-37-3789-01 6 55128539 55128539 C G HCRTR2 Missense_Mutation p.F227L 0.50 tolerated(1) benign(0.004) TCGA-37-3789-01 6 64408187 64408187 G T PHF3 Missense_Mutation p.A919S 0.13 tolerated(0.26) benign(0.015) TCGA-37-3789-01 6 75848583 75848583 G C COL12A1 Silent p.L1684L 0.19 TCGA-37-3789-01 6 78172386 78172386 G T HTR1B Missense_Mutation p.N245K 0.43 tolerated(0.37) benign(0.002) TCGA-37-3789-01 7 100404041 100404041 C T EPHB4 Splice_Site p.X828_splice 0.48 TCGA-37-3789-01 7 100683654 100683654 G A MUC17 Missense_Mutation p.R2986K 0.47 benign(0.005) TCGA-37-3789-01 7 123104992 123104992 T C IQUB Silent p.G551G 0.25 TCGA-37-3789-01 7 131853105 131853105 T C PLXNA4 Missense_Mutation p.K1415R 0.29 tolerated(0.23) benign(0.021) TCGA-37-3789-01 7 131872233 131872233 T C PLXNA4 Missense_Mutation p.H997R 0.41 tolerated(0.29) benign(0.004) TCGA-37-3789-01 7 148512011 148512011 G C EZH2 Nonsense_Mutation p.S556* 0.42 TCGA-37-3789-01 7 148801651 148801651 C T ZNF425 Missense_Mutation p.G438R 0.49 tolerated(0.24) probably_damaging(0.967) TCGA-37-3789-01 7 27224653 27224653 G T HOXA11 Silent p.T37T 0.52 TCGA-37-3789-01 7 31104445 31104445 A G ADCYAP1R1 Splice_Site p.X18_splice 0.56 TCGA-37-3789-01 7 44048468 44048468 C T SPDYE1 3'UTR 0.76 TCGA-37-3789-01 7 4959907 4959907 T C MMD2 Missense_Mutation p.D62G 0.77 deleterious(0.02) benign(0.017) TCGA-37-3789-01 7 53104084 53104084 C T POM121L12 Silent p.L240L 0.09 TCGA-37-3789-01 7 54823496 54823496 T C SEC61G Missense_Mutation p.H58R 0.09 tolerated(0.06) probably_damaging(0.935) TCGA-37-3789-01 7 55863741 55863741 C G SEPT14 Missense_Mutation p.E388D 0.72 deleterious(0.02) possibly_damaging(0.713) TCGA-37-3789-01 7 98508832 98508832 G T TRRAP Nonsense_Mutation p.E649* 0.09 TCGA-37-3789-01 8 104427350 104427350 G C DCAF13 Silent p.T44T 0.40 TCGA-37-3789-01 8 110984530 110984530 C G KCNV1 Silent p.L316L 0.16 TCGA-37-3789-01 8 113301647 113301647 G C CSMD3 Nonsense_Mutation p.S3032* 0.39 TCGA-37-3789-01 8 113332130 113332130 C A CSMD3 Missense_Mutation p.G2416C 0.21 deleterious(0) probably_damaging(0.989) TCGA-37-3789-01 8 116631517 116631517 C T TRPS1 Missense_Mutation p.D270N 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-37-3789-01 8 130760735 130760735 A T GSDMC 3'UTR 0.14 TCGA-37-3789-01 8 142228416 142228416 C G SLC45A4 Silent p.R390R 0.48 TCGA-37-3789-01 8 14412436 14412436 C T SGCZ Splice_Site p.X14_splice 0.33 TCGA-37-3789-01 8 24776205 24776205 C A NEFM 3'UTR 0.39 TCGA-37-3789-01 8 32617716 32617716 A T NRG1 Splice_Site p.X359_splice 0.33 TCGA-37-3789-01 8 38067632 38067632 C A BAG4 Nonsense_Mutation p.S332* 0.39 TCGA-37-3789-01 8 55533754 55533754 C A RP1 Silent p.L76L 0.24 TCGA-37-3789-01 8 73848373 73848373 C G KCNB2 Missense_Mutation p.F261L 0.06 deleterious(0) probably_damaging(1) TCGA-37-3789-01 9 100124649 100124649 C G CCDC180 Missense_Mutation p.F1320L 0.56 tolerated(1) benign(0.294) TCGA-37-3789-01 9 104357046 104357046 G A PPP3R2 Missense_Mutation p.P56L 0.55 deleterious(0) probably_damaging(0.963) TCGA-37-3789-01 9 117853072 117853072 C A TNC Missense_Mutation p.D76Y 0.59 deleterious(0) possibly_damaging(0.691) TCGA-37-3789-01 9 123151503 123151503 G A CDK5RAP2 3'UTR 0.17 TCGA-37-3789-01 9 12695714 12695714 A C TYRP1 Silent p.S195S 0.43 TCGA-37-3789-01 9 134305587 134305587 C T PRRC2B Missense_Mutation p.S19L 0.51 deleterious(0.01) possibly_damaging(0.713) TCGA-37-3789-01 9 135204730 135204730 G A SETX Missense_Mutation p.T752I 0.63 tolerated(0.24) benign(0.007) TCGA-37-3789-01 9 23701421 23701421 G A ELAVL2 Silent p.N223N 0.42 TCGA-37-3789-01 9 35813519 35813519 G A HINT2 Nonsense_Mutation p.Q84* 0.51 TCGA-37-3789-01 9 3829318 3829318 C - GLIS3 Frame_Shift_Del p.G883Afs*103 0.33 TCGA-37-3789-01 9 66458173 66458173 A G RNA5SP283 RNA 0.16 TCGA-37-3789-01 9 95256390 95256390 G A ECM2 3'Flank 0.29 TCGA-37-3789-01 X 107977075 107977075 C T IRS4 Missense_Mutation p.G834R 0.57 tolerated(0.06) unknown(0) TCGA-37-3789-01 X 110439768 110439768 G C PAK3 Missense_Mutation p.R472P 0.38 deleterious(0) probably_damaging(0.999) TCGA-37-3789-01 X 38146439 38146439 C G RPGR Missense_Mutation p.E605Q 0.45 benign(0.43) TCGA-37-3789-01 X 71360443 71360443 C G NHSL2 Silent p.L1015L 0.32 TCGA-37-3789-01 X 89177748 89177748 G T TGIF2LX Missense_Mutation p.D222Y 0.50 deleterious(0) possibly_damaging(0.688) TCGA-37-3789-01 X 91133967 91133967 G T PCDH11X Missense_Mutation p.D910Y 0.51 deleterious(0) possibly_damaging(0.853) TCGA-37-3792-01 10 101292843 101292843 C A NKX2-3 5'UTR 0.53 TCGA-37-3792-01 10 11312696 11312696 A G CELF2 Missense_Mutation p.Q229R 0.42 tolerated(0.05) benign(0.434) TCGA-37-3792-01 10 119013741 119013741 G T SLC18A2 Intron 0.64 TCGA-37-3792-01 10 124377652 124377652 G T DMBT1 Missense_Mutation p.D1542Y 0.40 deleterious(0.03) probably_damaging(1) TCGA-37-3792-01 10 124395715 124395715 A T DMBT1 Missense_Mutation p.N2124Y 0.37 deleterious(0.02) possibly_damaging(0.735) TCGA-37-3792-01 10 125447562 125447562 G C GPR26 Missense_Mutation p.Q300H 0.33 deleterious(0) probably_damaging(0.99) TCGA-37-3792-01 10 16962019 16962019 G T CUBN Missense_Mutation p.P2255Q 0.45 tolerated(0.11) benign(0.043) TCGA-37-3792-01 10 16962020 16962020 G T CUBN Missense_Mutation p.P2255T 0.47 tolerated(0.26) benign(0.155) TCGA-37-3792-01 10 17278315 17278315 T A VIM Silent p.P432P 0.43 TCGA-37-3792-01 10 21823724 21823724 G A MLLT10 Missense_Mutation p.V51M 0.26 deleterious(0.01) benign(0.104) TCGA-37-3792-01 10 24908466 24908466 C A ARHGAP21 Missense_Mutation p.M786I 0.37 tolerated(0.41) benign(0.001) TCGA-37-3792-01 10 28971088 28971088 A T BAMBI Nonsense_Mutation p.K181* 0.39 TCGA-37-3792-01 10 30316988 30316988 C A KIAA1462 Nonsense_Mutation p.E697* 0.35 TCGA-37-3792-01 10 31810810 31810810 C A ZEB1 Silent p.V850V 0.36 TCGA-37-3792-01 10 38343364 38343364 G T ZNF33A Missense_Mutation p.W104C 0.49 tolerated(0.05) probably_damaging(0.994) TCGA-37-3792-01 10 38353147 38353147 G T ZNF33A 3'Flank 0.46 TCGA-37-3792-01 10 43279814 43279814 G C BMS1 5'UTR 0.12 TCGA-37-3792-01 10 459973 459973 C G DIP2C Missense_Mutation p.V313L 0.50 tolerated(0.73) possibly_damaging(0.519) TCGA-37-3792-01 10 60461836 60461836 C A BICC1 Silent p.I80I 0.31 TCGA-37-3792-01 10 64219536 64219536 C A ZNF365 Missense_Mutation p.Q321K 0.45 tolerated_low_confidence(0.08) benign(0.004) TCGA-37-3792-01 10 65140205 65140205 C A JMJD1C Missense_Mutation p.R69L 0.42 deleterious(0) probably_damaging(0.998) TCGA-37-3792-01 10 70644279 70644279 T C STOX1 Missense_Mutation p.S243P 0.41 deleterious(0) probably_damaging(0.999) TCGA-37-3792-01 10 71631958 71631958 G T COL13A1 Nonsense_Mutation p.G131* 0.31 TCGA-37-3792-01 10 73055609 73055609 G T UNC5B Silent p.V739V 0.36 TCGA-37-3792-01 10 73521653 73521653 C A C10orf54 Silent p.T71T 0.35 TCGA-37-3792-01 10 73521656 73521656 C A C10orf54 Missense_Mutation p.K70N 0.38 tolerated(0.05) probably_damaging(1) TCGA-37-3792-01 10 7829838 7829838 C A KIN Missense_Mutation p.G20V 0.38 deleterious(0) probably_damaging(1) TCGA-37-3792-01 10 93753531 93753531 G T BTAF1 Missense_Mutation p.M1042I 0.38 tolerated(0.15) benign(0.012) TCGA-37-3792-01 10 98192587 98192587 T A TLL2 Missense_Mutation p.Y166F 0.57 tolerated(0.1) benign(0.344) TCGA-37-3792-01 10 98764453 98764453 T C SLIT1 Missense_Mutation p.Y1236C 0.29 deleterious(0) probably_damaging(0.997) TCGA-37-3792-01 11 107260848 107260848 C A CWF19L2 Missense_Mutation p.M608I 0.45 deleterious(0.02) benign(0.013) TCGA-37-3792-01 11 115088621 115088621 C A CADM1 Missense_Mutation p.G271V 0.36 deleterious(0) probably_damaging(1) TCGA-37-3792-01 11 123596729 123596729 C A ZNF202 Missense_Mutation p.R641S 0.42 deleterious(0) probably_damaging(0.99) TCGA-37-3792-01 11 123900651 123900651 G T OR10G8 Missense_Mutation p.G108C 0.40 tolerated(0.65) benign(0.443) TCGA-37-3792-01 11 1264895 1264895 C G MUC5B Missense_Mutation p.T2262S 0.09 possibly_damaging(0.558) TCGA-37-3792-01 11 132082023 132082023 A T NTM Nonsense_Mutation p.R170* 0.33 TCGA-37-3792-01 11 133711977 133711977 G C SPATA19 Nonsense_Mutation p.S154* 0.38 TCGA-37-3792-01 11 14284372 14284372 C A RP11-21L19.1 3'Flank 0.22 TCGA-37-3792-01 11 1619310 1619310 A G KRTAP5-2 Silent p.Y57Y 0.46 TCGA-37-3792-01 11 19185853 19185853 C A ZDHHC13 Silent p.I413I 0.48 TCGA-37-3792-01 11 20005756 20005756 C T NAV2 Nonsense_Mutation p.Q934* 0.26 TCGA-37-3792-01 11 21581878 21581878 G - NELL1 Frame_Shift_Del p.G644Afs*6 0.31 TCGA-37-3792-01 11 22283729 22283729 T C ANO5 Missense_Mutation p.L562P 0.38 deleterious(0) probably_damaging(0.988) TCGA-37-3792-01 11 22396346 22396346 G C SLC17A6 Missense_Mutation p.V363L 0.39 deleterious(0.01) benign(0.3) TCGA-37-3792-01 11 30032717 30032717 T C KCNA4 Silent p.E503E 0.29 TCGA-37-3792-01 11 30033371 30033371 G C KCNA4 Silent p.P285P 0.33 TCGA-37-3792-01 11 30433117 30433117 G C MPPED2 Silent p.T261T 0.23 TCGA-37-3792-01 11 31804995 31804995 G T ELP4 Missense_Mutation p.D400Y 0.39 deleterious(0) probably_damaging(0.941) TCGA-37-3792-01 11 32875036 32875036 G T PRRG4 Missense_Mutation p.R215M 0.20 deleterious(0) possibly_damaging(0.694) TCGA-37-3792-01 11 33374810 33374810 A C HIPK3 Missense_Mutation p.Q1115P 0.17 deleterious(0.03) benign(0) TCGA-37-3792-01 11 3681127 3681127 C A ART1 Silent p.P126P 0.40 TCGA-37-3792-01 11 46407156 46407156 C G CHRM4 Missense_Mutation p.A318P 0.18 tolerated(0.3) benign(0.185) TCGA-37-3792-01 11 4674362 4674362 C A OR51E1 Silent p.G202G 0.42 TCGA-37-3792-01 11 49597833 49597833 G A RP11-707M1.1 RNA 0.26 TCGA-37-3792-01 11 49831790 49831790 C A RP11-707M1.1 RNA 0.36 TCGA-37-3792-01 11 5254026 5254026 C A HBD 3'Flank 0.43 TCGA-37-3792-01 11 5254027 5254027 A T HBD 3'Flank 0.43 TCGA-37-3792-01 11 5290773 5290773 T A HBE1 Missense_Mutation p.I76F 0.49 deleterious(0) benign(0.25) TCGA-37-3792-01 11 55322377 55322377 G T OR4C15 Missense_Mutation p.G199W 0.25 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-37-3792-01 11 55761842 55761842 G T OR5F1 Nonsense_Mutation p.S87* 0.32 TCGA-37-3792-01 11 55904810 55904810 G C OR8J3 Missense_Mutation p.P129A 0.26 deleterious(0) probably_damaging(0.999) TCGA-37-3792-01 11 56000057 56000057 G T OR5T2 Missense_Mutation p.T202K 0.43 deleterious(0) probably_damaging(0.97) TCGA-37-3792-01 11 56058174 56058174 T C OR8H1 Missense_Mutation p.Y122C 0.31 deleterious(0.02) probably_damaging(0.966) TCGA-37-3792-01 11 56128614 56128614 G C OR8J1 Missense_Mutation p.V298L 0.16 deleterious(0) benign(0.128) TCGA-37-3792-01 11 56185598 56185598 G T OR5R1 Silent p.V37V 0.32 TCGA-37-3792-01 11 56468030 56468030 C A OR9G1 Missense_Mutation p.T56K 0.09 deleterious(0.01) possibly_damaging(0.842) TCGA-37-3792-01 11 57957984 57957984 G T OR9Q2 Missense_Mutation p.V8L 0.40 tolerated(0.72) benign(0.001) TCGA-37-3792-01 11 58125715 58125715 G T OR5B17 Nonsense_Mutation p.Y276* 0.16 TCGA-37-3792-01 11 58170115 58170115 C A OR5B3 Missense_Mutation p.M256I 0.33 deleterious_low_confidence(0.01) benign(0.17) TCGA-37-3792-01 11 58601892 58601892 G T GLYATL2 3'UTR 0.23 TCGA-37-3792-01 11 58723326 58723326 A G GLYATL1 Silent p.A276A 0.12 TCGA-37-3792-01 11 59210971 59210971 G T OR5A1 Missense_Mutation p.M110I 0.37 deleterious(0.02) benign(0.005) TCGA-37-3792-01 11 59282748 59282748 C - OR4D9 Frame_Shift_Del p.R122Afs*3 0.17 TCGA-37-3792-01 11 59376137 59376137 G A OSBP Silent p.L214L 0.12 TCGA-37-3792-01 11 59376151 59376151 T C OSBP Missense_Mutation p.T210A 0.10 tolerated(0.23) benign(0.017) TCGA-37-3792-01 11 59562848 59562848 G C STX3 Missense_Mutation p.E227Q 0.31 deleterious(0) benign(0.124) TCGA-37-3792-01 11 59596986 59596986 G T GIF Missense_Mutation p.H409N 0.38 deleterious(0.01) possibly_damaging(0.587) TCGA-37-3792-01 11 6024157 6024157 G T OR56A4 Missense_Mutation p.N74K 0.42 deleterious(0.02) benign(0.205) TCGA-37-3792-01 11 60567437 60567437 C A MS4A10 3'UTR 0.19 TCGA-37-3792-01 11 60637144 60637144 C A ZP1 Silent p.P151P 0.14 TCGA-37-3792-01 11 621561 621561 C T CDHR5 Splice_Site p.X169_splice 0.32 TCGA-37-3792-01 11 62288953 62288953 C A AHNAK Missense_Mutation p.W4312C 0.14 probably_damaging(0.944) TCGA-37-3792-01 11 62457989 62457989 T A BSCL2 Silent p.S413S 0.21 TCGA-37-3792-01 11 62911141 62911141 C A SLC22A24 Missense_Mutation p.L37F 0.13 deleterious(0) probably_damaging(0.992) TCGA-37-3792-01 11 62996037 62996037 C G SLC22A25 Splice_Site p.X135_splice 0.12 TCGA-37-3792-01 11 63176186 63176186 T A SLC22A9 Missense_Mutation p.I479K 0.36 tolerated(0.26) possibly_damaging(0.454) TCGA-37-3792-01 11 63487018 63487018 G T RTN3 Silent p.V348V 0.17 TCGA-37-3792-01 11 64434998 64434998 G T NRXN2 Missense_Mutation p.R508S 0.15 tolerated(0.07) benign(0.003) TCGA-37-3792-01 11 64875124 64875124 G T VPS51 Missense_Mutation p.A144S 0.38 tolerated(0.73) benign(0.026) TCGA-37-3792-01 11 67225971 67225971 G A CABP4 Missense_Mutation p.G261S 0.13 deleterious(0) probably_damaging(0.999) TCGA-37-3792-01 11 67401784 67401784 G T TBX10 Missense_Mutation p.P142Q 0.18 deleterious(0.02) benign(0.24) TCGA-37-3792-01 11 71500826 71500826 C T FAM86C1 Intron 0.20 TCGA-37-3792-01 11 71940532 71940532 G T INPPL1 Missense_Mutation p.G228V 0.14 deleterious(0.01) probably_damaging(0.919) TCGA-37-3792-01 11 73879436 73879436 C T C2CD3 Missense_Mutation p.R93H 0.46 deleterious(0.02) possibly_damaging(0.736) TCGA-37-3792-01 11 74168272 74168272 C T KCNE3 3'UTR 0.54 TCGA-37-3792-01 11 74800667 74800667 G - OR2AT4 Frame_Shift_Del p.P31Lfs*14 0.12 TCGA-37-3792-01 11 77817949 77817949 C T ALG8 Missense_Mutation p.G361D 0.14 tolerated(0.52) benign(0.003) TCGA-37-3792-01 11 7981252 7981252 T G NLRP10 Missense_Mutation p.K636T 0.29 deleterious(0.01) benign(0.216) TCGA-37-3792-01 11 92088473 92088473 G T FAT3 Silent p.V1065V 0.36 TCGA-37-3792-01 11 99941246 99941246 G T CNTN5 Missense_Mutation p.R418I 0.37 deleterious(0.04) possibly_damaging(0.857) TCGA-37-3792-01 12 100048887 100048887 C A ANKS1B Silent p.P410P 0.14 TCGA-37-3792-01 12 10150918 10150918 C T CLEC1B Silent p.V42V 0.18 TCGA-37-3792-01 12 10151636 10151636 C A CLEC1B Missense_Mutation p.V22F 0.12 deleterious(0.05) benign(0.042) TCGA-37-3792-01 12 101552076 101552076 T A SLC5A8 Missense_Mutation p.Y554F 0.37 tolerated(0.51) benign(0) TCGA-37-3792-01 12 10168310 10168310 G C CLEC12B Missense_Mutation p.V222L 0.18 tolerated(0.21) benign(0.002) TCGA-37-3792-01 12 102433686 102433686 T C CCDC53 Missense_Mutation p.K132R 0.29 deleterious(0.03) benign(0.05) TCGA-37-3792-01 12 102796200 102796200 G T IGF1 3'UTR 0.19 TCGA-37-3792-01 12 104373683 104373683 G C TDG Missense_Mutation p.E81Q 0.15 tolerated(0.48) benign(0.051) TCGA-37-3792-01 12 104698094 104698094 G T EID3 Missense_Mutation p.G128C 0.32 deleterious(0.05) probably_damaging(1) TCGA-37-3792-01 12 108686070 108686070 G T CMKLR1 Missense_Mutation p.R224S 0.38 deleterious(0) probably_damaging(0.961) TCGA-37-3792-01 12 109629722 109629722 C T ACACB Missense_Mutation p.T789M 0.11 deleterious(0.02) benign(0.432) TCGA-37-3792-01 12 111318936 111318936 G A CCDC63 Missense_Mutation p.R230Q 0.54 deleterious(0.01) probably_damaging(0.963) TCGA-37-3792-01 12 111342420 111342420 G A CCDC63 Silent p.L457L 0.26 TCGA-37-3792-01 12 113313516 113313516 C A RPH3A Missense_Mutation p.P306T 0.24 tolerated(0.17) benign(0.002) TCGA-37-3792-01 12 118520205 118520205 C T VSIG10 Missense_Mutation p.V131M 0.19 deleterious(0.01) benign(0.223) TCGA-37-3792-01 12 123082420 123082420 G T KNTC1 Nonsense_Mutation p.E1500* 0.30 TCGA-37-3792-01 12 124094543 124094543 C T DDX55 Silent p.A203A 0.17 TCGA-37-3792-01 12 130647574 130647574 G A FZD10 Silent p.P29P 0.29 TCGA-37-3792-01 12 133354389 133354389 C G GOLGA3 Silent p.V1195V 0.25 TCGA-37-3792-01 12 15652507 15652507 G T PTPRO Nonsense_Mutation p.E214* 0.18 TCGA-37-3792-01 12 18644465 18644465 C T PIK3C2G Silent p.A881A 0.12 TCGA-37-3792-01 12 1963150 1963150 G C CACNA2D4 Missense_Mutation p.A738G 0.11 deleterious(0.01) possibly_damaging(0.869) TCGA-37-3792-01 12 21068938 21068938 A T SLCO1B3 Silent p.G622G 0.59 TCGA-37-3792-01 12 21200103 21200103 G A SLCO1B7 Missense_Mutation p.V316M 0.21 tolerated(0.75) benign(0.004) TCGA-37-3792-01 12 21331528 21331528 G T SLCO1B1 Missense_Mutation p.G167V 0.36 deleterious(0.03) benign(0.248) TCGA-37-3792-01 12 21689922 21689922 C A GYS2 Missense_Mutation p.G693V 0.22 deleterious_low_confidence(0.01) benign(0.227) TCGA-37-3792-01 12 21728834 21728834 A G GYS2 Missense_Mutation p.I154T 0.26 tolerated(0.06) probably_damaging(0.999) TCGA-37-3792-01 12 21926482 21926482 G A KCNJ8 Silent p.R23R 0.15 TCGA-37-3792-01 12 23728744 23728744 G C SOX5 Nonsense_Mutation p.S398* 0.19 TCGA-37-3792-01 12 26753021 26753021 C A ITPR2 Missense_Mutation p.V1234L 0.16 tolerated(0.6) benign(0.002) TCGA-37-3792-01 12 26839547 26839547 T C ITPR2 Missense_Mutation p.T339A 0.08 tolerated(1) benign(0) TCGA-37-3792-01 12 2775934 2775934 C T CACNA1C Missense_Mutation p.R1585C 0.60 deleterious(0) probably_damaging(1) TCGA-37-3792-01 12 29630054 29630054 G T OVCH1 Missense_Mutation p.P453Q 0.17 deleterious(0.04) possibly_damaging(0.654) TCGA-37-3792-01 12 29920984 29920984 C T TMTC1 Missense_Mutation p.M109I 0.21 tolerated(0.06) benign(0.066) TCGA-37-3792-01 12 34178940 34178940 A G ALG10 Missense_Mutation p.N171S 0.19 tolerated(0.32) benign(0.3) TCGA-37-3792-01 12 46245446 46245446 G A ARID2 Silent p.T1180T 0.31 TCGA-37-3792-01 12 48963816 48963816 C A LALBA 5'UTR 0.24 TCGA-37-3792-01 12 51116983 51116983 A T DIP2B Splice_Site p.X1056_splice 0.12 TCGA-37-3792-01 12 51865081 51865081 C A SLC4A8 Missense_Mutation p.L557I 0.27 tolerated(0.23) possibly_damaging(0.897) TCGA-37-3792-01 12 52789800 52789800 G T KRT82 Missense_Mutation p.H429N 0.34 tolerated(0.36) benign(0.01) TCGA-37-3792-01 12 53185042 53185042 G A KRT3 Silent p.L495L 0.13 TCGA-37-3792-01 12 53687095 53687095 G C ESPL1 Missense_Mutation p.R2067P 0.24 deleterious(0) probably_damaging(1) TCGA-37-3792-01 12 55356340 55356340 T C TESPA1 Missense_Mutation p.M448V 0.28 tolerated_low_confidence(0.2) benign(0.003) TCGA-37-3792-01 12 55420847 55420847 G T NEUROD4 Silent p.G208G 0.22 TCGA-37-3792-01 12 55759511 55759511 T C OR6C75 Missense_Mutation p.M206T 0.14 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-37-3792-01 12 5603675 5603675 T C NTF3 Missense_Mutation p.Y112H 0.10 deleterious(0.01) probably_damaging(0.969) TCGA-37-3792-01 12 56846902 56846902 C A MIP Missense_Mutation p.R187L 0.43 deleterious(0) probably_damaging(1) TCGA-37-3792-01 12 58016574 58016574 C T SLC26A10 Missense_Mutation p.P266S 0.13 deleterious(0) probably_damaging(1) TCGA-37-3792-01 12 62954833 62954833 C A MON2 Silent p.T1324T 0.31 TCGA-37-3792-01 12 66696560 66696560 G T HELB Silent p.G59G 0.31 TCGA-37-3792-01 12 7030925 7030925 G T ENO2 Silent p.S349S 0.71 TCGA-37-3792-01 12 72936086 72936086 A T TRHDE Nonsense_Mutation p.R535* 0.55 TCGA-37-3792-01 12 7527299 7527299 C G CD163L1 Missense_Mutation p.E1050Q 0.07 deleterious(0) probably_damaging(0.987) TCGA-37-3792-01 12 75816817 75816817 A C GLIPR1L2 Intron 0.22 TCGA-37-3792-01 12 8078450 8078450 G T SLC2A3 Missense_Mutation p.T319N 0.63 deleterious(0) probably_damaging(1) TCGA-37-3792-01 12 81101829 81101829 G A MYF6 Missense_Mutation p.E111K 0.13 deleterious(0) probably_damaging(0.995) TCGA-37-3792-01 12 81675144 81675144 G A PPFIA2 Missense_Mutation p.P1035L 0.21 deleterious(0) possibly_damaging(0.454) TCGA-37-3792-01 12 83250997 83250997 G A TMTC2 Missense_Mutation p.V98I 0.21 deleterious(0.03) possibly_damaging(0.472) TCGA-37-3792-01 12 8991027 8991027 T C A2ML1 Silent p.T317T 0.60 TCGA-37-3792-01 12 91545452 91545452 C A DCN Silent p.L288L 0.18 TCGA-37-3792-01 12 9313676 9313676 G T PZP Missense_Mutation p.P942Q 0.24 deleterious(0) probably_damaging(0.996) TCGA-37-3792-01 12 95365290 95365290 C G NDUFA12 Missense_Mutation p.E122Q 0.19 tolerated(0.48) benign(0.013) TCGA-37-3792-01 12 98850644 98850644 C A SLC9A7P1 RNA 0.42 TCGA-37-3792-01 12 99898319 99898319 A T ANKS1B Missense_Mutation p.M458K 0.45 deleterious(0.03) benign(0.013) TCGA-37-3792-01 13 102029267 102029267 C G NALCN Splice_Site p.X172_splice 0.49 TCGA-37-3792-01 13 109496699 109496699 T A MYO16 Missense_Mutation p.L347Q 0.50 deleterious(0) probably_damaging(0.98) TCGA-37-3792-01 13 111371670 111371670 G C ING1 Silent p.A220A 0.41 TCGA-37-3792-01 13 114502386 114502386 G C TMEM255B Missense_Mutation p.Q139H 0.19 tolerated(0.36) benign(0.069) TCGA-37-3792-01 13 25067838 25067838 G T PARP4 Missense_Mutation p.L259M 0.31 deleterious(0.01) probably_damaging(0.993) TCGA-37-3792-01 13 28368004 28368004 G C GSX1 Missense_Mutation p.K238N 0.27 tolerated(0.32) benign(0.074) TCGA-37-3792-01 13 30801674 30801674 C A KATNAL1 Missense_Mutation p.G341V 0.23 deleterious(0.02) probably_damaging(0.914) TCGA-37-3792-01 13 36049804 36049804 C G MAB21L1 Missense_Mutation p.V158L 0.44 deleterious(0.02) possibly_damaging(0.896) TCGA-37-3792-01 13 39450508 39450508 C A FREM2 Silent p.R2845R 0.41 TCGA-37-3792-01 13 43362749 43362749 C T FAM216B Silent p.A81A 0.41 TCGA-37-3792-01 13 43900558 43900558 A T ENOX1 Silent p.S380S 0.54 TCGA-37-3792-01 13 48828053 48828053 A G ITM2B Missense_Mutation p.Y76C 0.43 deleterious(0) probably_damaging(0.997) TCGA-37-3792-01 13 48921986 48921986 C T RB1 Nonsense_Mutation p.Q176* 0.64 TCGA-37-3792-01 13 48937009 48937009 G T RB1 Missense_Mutation p.R259S 0.37 tolerated(0.16) probably_damaging(0.937) TCGA-37-3792-01 13 51963511 51963511 T C INTS6 Missense_Mutation p.Q228R 0.21 deleterious(0) probably_damaging(0.977) TCGA-37-3792-01 13 52603479 52603479 G T UTP14C Missense_Mutation p.R180I 0.52 deleterious(0) probably_damaging(0.972) TCGA-37-3792-01 13 53418766 53418766 C G PCDH8 Missense_Mutation p.G1048R 0.38 deleterious(0.02) possibly_damaging(0.701) TCGA-37-3792-01 13 58299274 58299274 G C PCDH17 Missense_Mutation p.R1109P 0.37 deleterious_low_confidence(0.01) benign(0.003) TCGA-37-3792-01 13 61084890 61084890 G C TDRD3 Splice_Site p.X381_splice 0.44 TCGA-37-3792-01 13 75884124 75884124 T C TBC1D4 Silent p.Q849Q 0.35 TCGA-37-3792-01 13 76378616 76378616 G A LMO7 Missense_Mutation p.E52K 0.12 deleterious(0.01) benign(0.282) TCGA-37-3792-01 13 92797165 92797165 G T GPC5 Missense_Mutation p.S495I 0.34 deleterious(0) probably_damaging(0.999) TCGA-37-3792-01 13 96622452 96622452 C T UGGT2 Missense_Mutation p.G417R 0.39 tolerated(0.06) benign(0.017) TCGA-37-3792-01 14 101492370 101492370 A T MIR758 RNA 0.12 TCGA-37-3792-01 14 101533122 101533122 C G MIR656 RNA 0.31 TCGA-37-3792-01 14 104493127 104493127 A G TDRD9 Missense_Mutation p.T1045A 0.11 tolerated(1) benign(0.001) TCGA-37-3792-01 14 105818734 105818734 G C PACS2 Missense_Mutation p.R76P 0.33 deleterious(0) probably_damaging(1) TCGA-37-3792-01 14 106207949 106207949 C T IGHG1 Missense_Mutation p.G285D 0.16 deleterious(0.03) probably_damaging(0.994) TCGA-37-3792-01 14 106237604 106237604 G A IGHG3 Missense_Mutation p.T47I 0.19 deleterious(0) probably_damaging(0.985) TCGA-37-3792-01 14 106494169 106494169 G T IGHV2-5 Missense_Mutation p.P108H 0.30 deleterious(0.02) possibly_damaging(0.879) TCGA-37-3792-01 14 19378119 19378119 G T OR11H12 Missense_Mutation p.V176F 0.09 tolerated(0.37) possibly_damaging(0.774) TCGA-37-3792-01 14 22509246 22509246 G T TRAV20 Missense_Mutation p.G62W 0.43 deleterious(0) probably_damaging(1) TCGA-37-3792-01 14 23844877 23844877 G T IL25 Missense_Mutation p.A108S 0.35 deleterious(0) probably_damaging(1) TCGA-37-3792-01 14 24975451 24975451 G C CMA1 Missense_Mutation p.T128R 0.41 deleterious(0.03) possibly_damaging(0.829) TCGA-37-3792-01 14 39716878 39716878 C G MIA2 Missense_Mutation p.T367S 0.40 tolerated(0.31) benign(0.109) TCGA-37-3792-01 14 47342692 47342692 G C MDGA2 Missense_Mutation p.P899R 0.08 tolerated(0.27) benign(0.093) TCGA-37-3792-01 14 47566276 47566276 C A MDGA2 Nonsense_Mutation p.G326* 0.18 TCGA-37-3792-01 14 50655233 50655233 T A SOS2 Missense_Mutation p.R232S 0.29 tolerated(0.7) benign(0.004) TCGA-37-3792-01 14 52496272 52496272 G C NID2 Missense_Mutation p.N798K 0.11 tolerated(0.21) benign(0.01) TCGA-37-3792-01 14 56763512 56763512 C G PELI2 Missense_Mutation p.N297K 0.12 tolerated(1) benign(0.003) TCGA-37-3792-01 14 57938279 57938279 G A C14orf105 Missense_Mutation p.H229Y 0.27 tolerated(0.49) benign(0.02) TCGA-37-3792-01 14 63269224 63269224 G T KCNH5 Missense_Mutation p.P549T 0.29 deleterious(0) probably_damaging(0.998) TCGA-37-3792-01 14 63316369 63316369 A G KCNH5 Splice_Site p.X523_splice 0.09 TCGA-37-3792-01 14 63417146 63417146 C A KCNH5 Silent p.L358L 0.27 TCGA-37-3792-01 14 65253203 65253203 G T SPTB Silent p.R1160R 0.28 TCGA-37-3792-01 14 70515518 70515518 A T SLC8A3 Silent p.A791A 0.28 TCGA-37-3792-01 14 71500682 71500682 G T PCNX Nonsense_Mutation p.E1235* 0.15 TCGA-37-3792-01 14 73181203 73181203 C A DPF3 Missense_Mutation p.G178C 0.25 deleterious(0) possibly_damaging(0.746) TCGA-37-3792-01 14 74995251 74995251 G T LTBP2 Missense_Mutation p.A768E 0.60 tolerated(0.14) benign(0.014) TCGA-37-3792-01 14 75018986 75018986 C A LTBP2 Missense_Mutation p.D435Y 0.39 deleterious(0.01) possibly_damaging(0.759) TCGA-37-3792-01 14 76045651 76045651 C T FLVCR2 Silent p.F112F 0.20 TCGA-37-3792-01 14 79111642 79111642 G T NRXN3 5'UTR 0.14 TCGA-37-3792-01 14 79432527 79432527 G C NRXN3 Missense_Mutation p.G479A 0.20 deleterious(0.02) probably_damaging(0.964) TCGA-37-3792-01 14 79454456 79454456 C A NRXN3 Silent p.T705T 0.41 TCGA-37-3792-01 14 93119058 93119058 C G RIN3 Missense_Mutation p.T555R 0.19 deleterious(0) probably_damaging(0.992) TCGA-37-3792-01 14 94716569 94716569 C G PPP4R4 Missense_Mutation p.R558G 0.44 deleterious(0.01) possibly_damaging(0.5) TCGA-37-3792-01 14 94718116 94718116 G C PPP4R4 Missense_Mutation p.R583T 0.21 deleterious(0) probably_damaging(0.998) TCGA-37-3792-01 15 101597132 101597132 C G LRRK1 Missense_Mutation p.H1468Q 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-37-3792-01 15 24921180 24921180 C G NPAP1 Missense_Mutation p.R56G 0.30 tolerated(0.69) benign(0.433) TCGA-37-3792-01 15 25430672 25430672 G T SNORD115-10 5'Flank 0.21 TCGA-37-3792-01 15 25448412 25448412 G A SNORD115-18 RNA 0.11 TCGA-37-3792-01 15 25492410 25492410 G C SNORD115-40 3'Flank 0.18 TCGA-37-3792-01 15 27193214 27193214 C G GABRA5 Missense_Mutation p.S408C 0.31 tolerated(0.26) possibly_damaging(0.612) TCGA-37-3792-01 15 27725934 27725934 G T GABRG3 Splice_Site p.X238_splice 0.27 TCGA-37-3792-01 15 28000479 28000480 - T OCA2 3'UTR 0.30 TCGA-37-3792-01 15 31283698 31283698 G C MTMR10 Silent p.L4L 0.17 TCGA-37-3792-01 15 31325004 31325004 C G TRPM1 Missense_Mutation p.G964A 0.12 tolerated(0.25) probably_damaging(0.984) TCGA-37-3792-01 15 33926845 33926845 C G RYR3 Missense_Mutation p.T1029S 0.15 probably_damaging(0.964) TCGA-37-3792-01 15 34395015 34395015 A G PGBD4 Missense_Mutation p.K95E 0.40 tolerated(0.21) benign(0.066) TCGA-37-3792-01 15 34536189 34536189 G A SLC12A6 Silent p.F676F 0.36 TCGA-37-3792-01 15 40591105 40591105 T C PLCB2 Silent p.K248K 0.34 TCGA-37-3792-01 15 43299301 43299301 C A UBR1 Nonsense_Mutation p.G1131* 0.24 TCGA-37-3792-01 15 43653961 43653961 C T ZSCAN29 Silent p.E623E 0.23 TCGA-37-3792-01 15 43910129 43910129 C T STRC Missense_Mutation p.D164N 0.10 tolerated(0.38) benign(0.021) TCGA-37-3792-01 15 44903184 44903184 C G SPG11 Splice_Site p.X1049_splice 0.08 TCGA-37-3792-01 15 48056896 48056896 G T SEMA6D Missense_Mutation p.D387Y 0.19 deleterious(0) probably_damaging(1) TCGA-37-3792-01 15 48058163 48058163 C G SEMA6D Missense_Mutation p.R509G 0.25 deleterious(0) benign(0.166) TCGA-37-3792-01 15 49304941 49304941 C A SECISBP2L Missense_Mutation p.L545F 0.13 tolerated(0.71) benign(0.005) TCGA-37-3792-01 15 54305127 54305127 G A UNC13C Silent p.L9L 0.35 TCGA-37-3792-01 15 55652283 55652283 C - CCPG1 Frame_Shift_Del p.R563Kfs*79 0.16 TCGA-37-3792-01 15 55912094 55912094 T C PRTG 3'UTR 0.27 TCGA-37-3792-01 15 56208634 56208634 C T NEDD4 Silent p.L132L 0.12 TCGA-37-3792-01 15 59523911 59523911 G A MYO1E Missense_Mutation p.S167F 0.11 deleterious(0) probably_damaging(1) TCGA-37-3792-01 15 65622893 65622893 T A IGDCC3 Missense_Mutation p.Q583L 0.27 tolerated(0.23) benign(0.158) TCGA-37-3792-01 15 66015236 66015236 C T DENND4A Missense_Mutation p.C513Y 0.24 deleterious(0) probably_damaging(0.99) TCGA-37-3792-01 15 68937547 68937547 G T CORO2B Missense_Mutation p.G22W 0.26 deleterious(0) probably_damaging(1) TCGA-37-3792-01 15 69331282 69331282 G C NOX5 Missense_Mutation p.R486P 0.29 deleterious(0.03) possibly_damaging(0.886) TCGA-37-3792-01 15 73614805 73614805 G T HCN4 3'UTR 0.56 TCGA-37-3792-01 15 75105270 75105270 G T LMAN1L Silent p.T25T 0.18 TCGA-37-3792-01 15 75816556 75816556 G A PTPN9 Silent p.T97T 0.10 TCGA-37-3792-01 15 76248281 76248281 G A NRG4 Missense_Mutation p.A108V 0.24 tolerated(0.13) unknown(0) TCGA-37-3792-01 15 78449957 78449957 T - IDH3A Frame_Shift_Del p.F54Lfs*26 0.39 TCGA-37-3792-01 15 85681103 85681103 A T PDE8A Missense_Mutation p.K820M 0.29 deleterious(0) possibly_damaging(0.687) TCGA-37-3792-01 15 86791000 86791000 C A AGBL1 Missense_Mutation p.Q163K 0.27 tolerated(0.28) benign(0.013) TCGA-37-3792-01 15 90814931 90814931 G T NGRN Missense_Mutation p.A263S 0.19 tolerated(0.29) possibly_damaging(0.527) TCGA-37-3792-01 15 93496756 93496756 G C CHD2 Missense_Mutation p.E558Q 0.16 tolerated(0.52) benign(0.122) TCGA-37-3792-01 15 99796300 99796300 C G LRRC28 Silent p.L46L 0.23 TCGA-37-3792-01 16 11051736 11051736 T A CLEC16A Missense_Mutation p.W60R 0.40 deleterious(0) probably_damaging(0.998) TCGA-37-3792-01 16 11076812 11076812 G T CLEC16A Missense_Mutation p.M345I 0.42 tolerated(0.5) benign(0) TCGA-37-3792-01 16 12497344 12497344 G T SNX29 Silent p.V665V 0.24 TCGA-37-3792-01 16 15850232 15850232 T C MYH11 Missense_Mutation p.K579R 0.45 probably_damaging(0.993) TCGA-37-3792-01 16 16355447 16355447 G T NOMO3 Missense_Mutation p.D437Y 0.18 deleterious(0.04) possibly_damaging(0.526) TCGA-37-3792-01 16 1822363 1822363 G A MRPS34 Silent p.A172A 0.17 TCGA-37-3792-01 16 20334225 20334225 C A GP2 Missense_Mutation p.W207C 0.24 deleterious(0) probably_damaging(0.968) TCGA-37-3792-01 16 20386144 20386144 C A PDILT Missense_Mutation p.K227N 0.20 deleterious(0) probably_damaging(0.99) TCGA-37-3792-01 16 20554238 20554238 C A ACSM2B Nonsense_Mutation p.E503* 0.19 TCGA-37-3792-01 16 21065820 21065820 C G DNAH3 Missense_Mutation p.Q1320H 0.17 tolerated(0.05) benign(0.104) TCGA-37-3792-01 16 21995837 21995837 G A PDZD9 Silent p.I122I 0.35 TCGA-37-3792-01 16 24268093 24268093 A G CACNG3 Silent p.R6R 0.20 TCGA-37-3792-01 16 24581081 24581081 G A RBBP6 Missense_Mutation p.D1024N 0.19 deleterious_low_confidence(0) unknown(0) TCGA-37-3792-01 16 25235753 25235753 A T AQP8 Missense_Mutation p.Q153L 0.44 deleterious(0.04) benign(0.056) TCGA-37-3792-01 16 25255314 25255314 G A ZKSCAN2 Silent p.S591S 0.23 TCGA-37-3792-01 16 27460588 27460588 G T IL21R Missense_Mutation p.G534V 0.18 tolerated(0.07) benign(0.046) TCGA-37-3792-01 16 28906220 28906220 C T ATP2A1 Silent p.F455F 0.15 TCGA-37-3792-01 16 29124460 29124460 A T RP11-426C22.5 5'Flank 0.31 TCGA-37-3792-01 16 30376325 30376325 C G TBC1D10B Missense_Mutation p.E389D 0.20 tolerated(0.1) benign(0.102) TCGA-37-3792-01 16 31049473 31049473 A G STX4 Missense_Mutation p.M176V 0.09 deleterious(0.01) benign(0.257) TCGA-37-3792-01 16 31284740 31284740 A T ITGAM Silent p.L253L 0.17 TCGA-37-3792-01 16 3254784 3254784 G C OR1F1 Missense_Mutation p.D180H 0.19 deleterious(0) probably_damaging(0.997) TCGA-37-3792-01 16 4242232 4242232 G T SRL Silent p.L448L 0.20 TCGA-37-3792-01 16 4793055 4793055 G A C16orf71 Silent p.A265A 0.20 TCGA-37-3792-01 16 48581919 48581919 T G N4BP1 Silent p.R742R 0.34 TCGA-37-3792-01 16 57062035 57062035 C A NLRC5 Missense_Mutation p.S709R 0.32 deleterious(0) possibly_damaging(0.482) TCGA-37-3792-01 16 61859003 61859003 C A CDH8 Missense_Mutation p.G250C 0.16 deleterious(0.02) probably_damaging(1) TCGA-37-3792-01 16 64984825 64984825 G T CDH11 Missense_Mutation p.P580Q 0.33 deleterious(0) possibly_damaging(0.872) TCGA-37-3792-01 16 66424460 66424460 C A CDH5 Silent p.P312P 0.31 TCGA-37-3792-01 16 67221631 67221631 G T EXOC3L1 Silent p.P179P 0.26 TCGA-37-3792-01 16 67381419 67381419 G A LRRC36 Missense_Mutation p.G138D 0.21 deleterious(0.04) benign(0.138) TCGA-37-3792-01 16 68712471 68712471 C T CDH3 Missense_Mutation p.P153L 0.17 deleterious(0) probably_damaging(0.998) TCGA-37-3792-01 16 68725736 68725736 G T CDH3 Missense_Mutation p.V637L 0.29 deleterious(0) possibly_damaging(0.708) TCGA-37-3792-01 16 69385591 69385591 C T TMED6 Silent p.Q22Q 0.17 TCGA-37-3792-01 16 70292949 70292949 T A AARS Silent p.G642G 0.20 TCGA-37-3792-01 16 70712257 70712257 C T MTSS1L Missense_Mutation p.M174I 0.11 deleterious(0.03) possibly_damaging(0.869) TCGA-37-3792-01 16 70820182 70820182 T A VAC14 Missense_Mutation p.Q64L 0.15 deleterious(0.04) benign(0.007) TCGA-37-3792-01 16 71481897 71481897 C T ZNF23 3'UTR 0.50 TCGA-37-3792-01 16 71984139 71984139 T C PKD1L3 RNA 0.62 TCGA-37-3792-01 16 72923731 72923731 T A ZFHX3 Missense_Mutation p.E1116V 0.38 probably_damaging(0.991) TCGA-37-3792-01 16 72923732 72923732 C A ZFHX3 Nonsense_Mutation p.E1116* 0.35 TCGA-37-3792-01 16 74505167 74505167 C A GLG1 Missense_Mutation p.Q711H 0.15 tolerated(0.14) possibly_damaging(0.854) TCGA-37-3792-01 16 76587299 76587299 C A CNTNAP4 Missense_Mutation p.P1115T 0.40 tolerated(0.34) benign(0.005) TCGA-37-3792-01 16 77356247 77356247 C A ADAMTS18 Missense_Mutation p.D717Y 0.21 deleterious(0.01) probably_damaging(0.973) TCGA-37-3792-01 16 80719011 80719011 C G CDYL2 Missense_Mutation p.D14H 0.10 deleterious(0) probably_damaging(1) TCGA-37-3792-01 16 81010032 81010032 C A CMC2 Missense_Mutation p.M66I 0.18 deleterious(0.04) benign(0.17) TCGA-37-3792-01 16 82033174 82033174 C G SDR42E1 Missense_Mutation p.D242H 0.19 tolerated(0.14) possibly_damaging(0.756) TCGA-37-3792-01 16 82101788 82101788 G A HSD17B2 Silent p.G93G 0.10 TCGA-37-3792-01 16 9857526 9857526 T A GRIN2A Missense_Mutation p.Y1292F 0.25 tolerated(0.26) benign(0.014) TCGA-37-3792-01 17 10322069 10322069 G T MYH8 Missense_Mutation p.P135Q 0.42 deleterious(0.01) probably_damaging(0.989) TCGA-37-3792-01 17 10368904 10368904 G T MYH4 Silent p.G120G 0.38 TCGA-37-3792-01 17 10728575 10728575 G T PIRT Missense_Mutation p.L130I 0.27 tolerated(0.18) benign(0.016) TCGA-37-3792-01 17 11572791 11572791 C A DNAH9 Missense_Mutation p.S1011R 0.43 benign(0.004) TCGA-37-3792-01 17 11593510 11593510 C A DNAH9 Silent p.T1457T 0.34 TCGA-37-3792-01 17 12487932 12487932 T A LINC00670 RNA 0.50 TCGA-37-3792-01 17 12666603 12666603 T A MYOCD Missense_Mutation p.M868K 0.33 tolerated(0.09) benign(0.037) TCGA-37-3792-01 17 16722640 16722640 T C AC022596.6 RNA 0.26 TCGA-37-3792-01 17 18157440 18157440 G A FLII Missense_Mutation p.T211I 0.32 deleterious(0.01) benign(0.196) TCGA-37-3792-01 17 20405865 20405865 G A RP11-434D2.7 3'Flank 0.15 TCGA-37-3792-01 17 21319314 21319314 G T KCNJ12 Missense_Mutation p.K220N 0.14 tolerated(0.3) possibly_damaging(0.471) TCGA-37-3792-01 17 25631920 25631920 G T WSB1 Missense_Mutation p.W198L 0.27 deleterious(0) benign(0.03) TCGA-37-3792-01 17 28545865 28545865 T C SLC6A4 Missense_Mutation p.H143R 0.26 tolerated(0.05) probably_damaging(1) TCGA-37-3792-01 17 29554540 29554540 G T NF1 Splice_Site p.X776_splice 0.38 TCGA-37-3792-01 17 32483255 32483255 G C ASIC2 Missense_Mutation p.F99L 0.27 tolerated(0.41) benign(0.058) TCGA-37-3792-01 17 34431322 34431322 G A CCL4 Silent p.L8L 0.23 TCGA-37-3792-01 17 34945731 34945731 A G GGNBP2 Missense_Mutation p.R662G 0.16 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-37-3792-01 17 3664788 3664788 C - ITGAE Frame_Shift_Del p.P115Lfs*57 0.28 TCGA-37-3792-01 17 37681049 37681049 G C CDK12 Missense_Mutation p.G1073A 0.29 benign(0.057) TCGA-37-3792-01 17 38854397 38854397 C A KRT24 3'UTR 0.58 TCGA-37-3792-01 17 39296489 39296489 C A KRTAP4-6 Missense_Mutation p.C84F 0.30 deleterious(0) unknown(0) TCGA-37-3792-01 17 39340905 39340905 C A KRTAP4-1 Missense_Mutation p.V68F 0.41 tolerated(0.24) benign(0.006) TCGA-37-3792-01 17 39522765 39522765 G T KRT33B Missense_Mutation p.S182Y 0.12 deleterious(0) probably_damaging(0.968) TCGA-37-3792-01 17 39580276 39580276 C G KRT37 Intron 0.18 TCGA-37-3792-01 17 39622345 39622345 C A KRT32 Splice_Site p.X184_splice 0.28 TCGA-37-3792-01 17 40934832 40934832 C G WNK4 Silent p.L225L 0.14 TCGA-37-3792-01 17 43163883 43163884 - TT NMT1 Frame_Shift_Ins p.L84Ffs*50 0.24 TCGA-37-3792-01 17 48561071 48561071 G C RSAD1 Missense_Mutation p.E353Q 0.19 tolerated(0.07) possibly_damaging(0.649) TCGA-37-3792-01 17 48668887 48668887 C A CACNA1G Missense_Mutation p.P849T 0.38 deleterious(0.01) probably_damaging(1) TCGA-37-3792-01 17 50212316 50212316 A G CA10 Intron 0.13 TCGA-37-3792-01 17 51901198 51901198 T C KIF2B Silent p.H268H 0.09 TCGA-37-3792-01 17 55183209 55183209 T C AKAP1 Silent p.S128S 0.33 TCGA-37-3792-01 17 56343642 56343642 C A LPO Missense_Mutation p.L550M 0.32 deleterious(0) probably_damaging(1) TCGA-37-3792-01 17 56393446 56393446 G T BZRAP1 Missense_Mutation p.P679Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-37-3792-01 17 59560378 59560378 C A TBX4 Missense_Mutation p.P380H 0.34 tolerated(0.44) probably_damaging(0.999) TCGA-37-3792-01 17 59560379 59560379 C A TBX4 Silent p.P380P 0.34 TCGA-37-3792-01 17 60351163 60351163 A G TBC1D3P2 RNA 0.27 TCGA-37-3792-01 17 61988323 61988323 C A CSHL1 Intron 0.24 TCGA-37-3792-01 17 64210724 64210724 C A APOH Nonsense_Mutation p.G277* 0.26 TCGA-37-3792-01 17 66871503 66871503 C - ABCA8 Frame_Shift_Del p.G1470Afs*8 0.24 TCGA-37-3792-01 17 67017972 67017972 T A ABCA9 Missense_Mutation p.N771I 0.33 tolerated(0.11) benign(0.041) TCGA-37-3792-01 17 6904821 6904821 T G AC027763.2 Intron 0.39 TCGA-37-3792-01 17 6928493 6928493 C T BCL6B Missense_Mutation p.P288L 0.40 tolerated(0.33) benign(0.001) TCGA-37-3792-01 17 71232550 71232550 A T C17orf80 Missense_Mutation p.K310I 0.31 deleterious(0) probably_damaging(0.994) TCGA-37-3792-01 17 71281473 71281473 C A CDC42EP4 3'UTR 0.31 TCGA-37-3792-01 17 72943292 72943292 C G OTOP3 Missense_Mutation p.R448G 0.32 tolerated(0.54) benign(0.019) TCGA-37-3792-01 17 73774915 73774915 C A H3F3B Missense_Mutation p.Q86H 0.32 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-37-3792-01 17 74141503 74141503 G T RNF157 Intron 0.31 TCGA-37-3792-01 17 74942502 74942502 G C MGAT5B Silent p.L640L 0.21 TCGA-37-3792-01 17 7577550 7577550 C A TP53 Missense_Mutation p.G244V 0.44 deleterious(0) probably_damaging(1) TCGA-37-3792-01 17 76394385 76394385 C G PGS1 Nonsense_Mutation p.S155* 0.08 TCGA-37-3792-01 17 7722004 7722004 G A DNAH2 Missense_Mutation p.R3527Q 0.24 benign(0.183) TCGA-37-3792-01 17 78272236 78272236 G C RNF213 Missense_Mutation p.D710H 0.18 possibly_damaging(0.819) TCGA-37-3792-01 17 79653366 79653366 C G HGS Missense_Mutation p.I49M 0.33 deleterious(0.04) probably_damaging(0.993) TCGA-37-3792-01 18 13069112 13069112 G A CEP192 Missense_Mutation p.A1663T 0.27 tolerated(0.07) benign(0.056) TCGA-37-3792-01 18 14542955 14542955 C A POTEC Missense_Mutation p.C64F 0.24 deleterious_low_confidence(0.01) benign(0) TCGA-37-3792-01 18 14543043 14543043 A T POTEC Missense_Mutation p.C35S 0.22 deleterious_low_confidence(0.01) benign(0.152) TCGA-37-3792-01 18 2703688 2703688 A C SMCHD1 Splice_Site p.X550_splice 0.37 TCGA-37-3792-01 18 2951053 2951053 C A LPIN2 Missense_Mutation p.R197L 0.26 tolerated(0.22) possibly_damaging(0.749) TCGA-37-3792-01 18 30260148 30260148 T C KLHL14 Silent p.G524G 0.26 TCGA-37-3792-01 18 44560759 44560759 G C TCEB3B Missense_Mutation p.R293G 0.28 tolerated(0.31) benign(0.013) TCGA-37-3792-01 18 5891762 5891762 T A TMEM200C Missense_Mutation p.T101S 0.24 tolerated(0.54) benign(0.02) TCGA-37-3792-01 18 60795836 60795836 G T BCL2 3'UTR 0.43 TCGA-37-3792-01 18 61390427 61390427 G A SERPINB11 Missense_Mutation p.G325S 0.38 tolerated(0.07) benign(0.025) TCGA-37-3792-01 18 909534 909534 C A ADCYAP1 Silent p.R143R 0.30 TCGA-37-3792-01 18 9256397 9256397 A T ANKRD12 Missense_Mutation p.K1044N 0.18 deleterious(0) possibly_damaging(0.69) TCGA-37-3792-01 19 11143985 11143985 G T SMARCA4 Missense_Mutation p.R1189L 0.43 probably_damaging(1) TCGA-37-3792-01 19 1221302 1221302 G T STK11 Silent p.P275P 0.47 TCGA-37-3792-01 19 15793218 15793218 C A CYP4F12 Missense_Mutation p.A182D 0.38 deleterious(0.04) benign(0.125) TCGA-37-3792-01 19 19258587 19258587 C T MEF2B Missense_Mutation p.G105R 0.46 deleterious(0.02) possibly_damaging(0.76) TCGA-37-3792-01 19 19750936 19750936 C A GMIP Silent p.L165L 0.39 TCGA-37-3792-01 19 19766889 19766889 G - ATP13A1 Frame_Shift_Del p.P396Hfs*8 0.30 TCGA-37-3792-01 19 21607742 21607742 A G ZNF493 Missense_Mutation p.I761V 0.33 tolerated(0.11) benign(0.079) TCGA-37-3792-01 19 21950276 21950276 C A ZNF100 5'UTR 0.16 TCGA-37-3792-01 19 2220112 2220112 C T DOT1L Silent p.S899S 0.30 TCGA-37-3792-01 19 22942377 22942377 G T ZNF99 Silent p.R112R 0.57 TCGA-37-3792-01 19 23544992 23544992 C A ZNF91 Missense_Mutation p.E263D 0.26 deleterious(0.03) benign(0.004) TCGA-37-3792-01 19 31040177 31040177 C A ZNF536 Silent p.P1217P 0.27 TCGA-37-3792-01 19 31769584 31769584 G T TSHZ3 Missense_Mutation p.A372D 0.25 deleterious(0) possibly_damaging(0.894) TCGA-37-3792-01 19 36224718 36224718 G T KMT2B Missense_Mutation p.Q2368H 0.45 benign(0.02) TCGA-37-3792-01 19 3651898 3651898 C A PIP5K1C Missense_Mutation p.K351N 0.45 deleterious(0.01) possibly_damaging(0.904) TCGA-37-3792-01 19 37726551 37726551 A G ZNF383 Missense_Mutation p.E37G 0.16 deleterious(0) probably_damaging(0.999) TCGA-37-3792-01 19 39002986 39002986 T A RYR1 Missense_Mutation p.L3112Q 0.38 benign(0.088) TCGA-37-3792-01 19 39200982 39200982 G A ACTN4 Silent p.K273K 0.40 TCGA-37-3792-01 19 39734788 39734788 G T IFNL3 Missense_Mutation p.R90S 0.31 deleterious(0) probably_damaging(0.936) TCGA-37-3792-01 19 39787150 39787150 C A IFNL1 Missense_Mutation p.T30N 0.32 tolerated(0.54) benign(0.034) TCGA-37-3792-01 19 41597759 41597759 G C CYP2A13 Silent p.L259L 0.25 TCGA-37-3792-01 19 41808821 41808821 G T HNRNPUL1 Nonsense_Mutation p.G647* 0.28 TCGA-37-3792-01 19 42090761 42090761 A C CEACAM21 Silent p.A254A 0.36 TCGA-37-3792-01 19 42187885 42187885 C T CEACAM7 Nonsense_Mutation p.W179* 0.12 TCGA-37-3792-01 19 42343039 42343039 G C LYPD4 Missense_Mutation p.H43D 0.23 tolerated(0.33) benign(0.046) TCGA-37-3792-01 19 43382272 43382272 G T PSG1 Missense_Mutation p.L75I 0.25 tolerated(0.42) benign(0.005) TCGA-37-3792-01 19 43522996 43522996 G T PSG11 Missense_Mutation p.A212E 0.25 deleterious(0) probably_damaging(0.952) TCGA-37-3792-01 19 43683181 43683181 G T PSG5 Intron 0.24 TCGA-37-3792-01 19 43683182 43683182 G T PSG5 Intron 0.24 TCGA-37-3792-01 19 43698527 43698527 T A PSG4 Missense_Mutation p.K403M 0.14 tolerated(0.07) benign(0.271) TCGA-37-3792-01 19 43967298 43967298 C A LYPD3 Missense_Mutation p.G175V 0.39 deleterious(0) probably_damaging(1) TCGA-37-3792-01 19 44680995 44680995 G T ZNF226 Missense_Mutation p.G527V 0.29 deleterious(0.01) probably_damaging(1) TCGA-37-3792-01 19 44793206 44793206 C G ZNF235 Missense_Mutation p.G128R 0.29 tolerated(0.48) benign(0.02) TCGA-37-3792-01 19 45448484 45448484 C A APOC4 Silent p.L102L 0.29 TCGA-37-3792-01 19 45868140 45868140 C A ERCC2 Missense_Mutation p.G184W 0.24 deleterious(0) probably_damaging(0.999) TCGA-37-3792-01 19 45998116 45998116 C A RTN2 Missense_Mutation p.G76V 0.48 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-37-3792-01 19 46021256 46021256 C G VASP Missense_Mutation p.R83G 0.19 deleterious(0) unknown(0) TCGA-37-3792-01 19 46663942 46663942 G T IGFL2 Nonsense_Mutation p.E60* 0.33 TCGA-37-3792-01 19 46997817 46997817 C A PNMAL2 Silent p.P302P 0.28 TCGA-37-3792-01 19 47844562 47844562 C - C5AR2 Frame_Shift_Del p.A170Pfs*31 0.37 TCGA-37-3792-01 19 48197920 48197920 G T GLTSCR1 Missense_Mutation p.Q944H 0.33 probably_damaging(0.997) TCGA-37-3792-01 19 48956106 48956106 C A GRWD1 Missense_Mutation p.P389T 0.38 tolerated(0.5) benign(0.002) TCGA-37-3792-01 19 49425099 49425099 G C NUCB1 Missense_Mutation p.E397Q 0.31 deleterious(0.03) possibly_damaging(0.634) TCGA-37-3792-01 19 50031829 50031829 G T RCN3 Missense_Mutation p.V34L 0.32 deleterious(0.02) benign(0.176) TCGA-37-3792-01 19 50243066 50243066 G T TSKS Silent p.P582P 0.39 TCGA-37-3792-01 19 50666038 50666038 C A IZUMO2 Missense_Mutation p.V89F 0.11 tolerated(0.25) possibly_damaging(0.607) TCGA-37-3792-01 19 51410015 51410015 G C KLK4 3'UTR 0.31 TCGA-37-3792-01 19 51466773 51466773 A T KLK6 Missense_Mutation p.L77H 0.26 deleterious(0) probably_damaging(0.988) TCGA-37-3792-01 19 51503732 51503732 C A KLK8 Missense_Mutation p.G105C 0.30 deleterious(0) probably_damaging(0.993) TCGA-37-3792-01 19 51509873 51509873 G T KLK9 Missense_Mutation p.L103I 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-37-3792-01 19 51650475 51650475 C G SIGLEC7 Intron 0.16 TCGA-37-3792-01 19 52115508 52115508 G T SIGLEC5 Nonsense_Mutation p.Y544* 0.25 TCGA-37-3792-01 19 52468935 52468935 T G ZNF350 Silent p.T257T 0.28 TCGA-37-3792-01 19 53644483 53644483 C T ZNF347 Missense_Mutation p.R534K 0.35 tolerated(0.14) benign(0.102) TCGA-37-3792-01 19 53741229 53741229 T C ZNF677 Missense_Mutation p.T251A 0.23 tolerated(0.3) benign(0.001) TCGA-37-3792-01 19 54754749 54754749 G T LILRB5 Missense_Mutation p.H559Q 0.25 tolerated(0.37) benign(0.013) TCGA-37-3792-01 19 54759308 54759308 G A LILRB5 Nonsense_Mutation p.Q265* 0.25 TCGA-37-3792-01 19 54778620 54778620 G T LILRB2 Silent p.R572R 0.26 TCGA-37-3792-01 19 54779802 54779802 C A LILRB2 Intron 0.18 TCGA-37-3792-01 19 55349196 55349196 G T KIR2DS4 Missense_Mutation p.G79V 0.58 deleterious_low_confidence(0.03) probably_damaging(0.988) TCGA-37-3792-01 19 55663221 55663221 T C TNNI3 Missense_Mutation p.K205R 0.27 deleterious(0.03) probably_damaging(0.978) TCGA-37-3792-01 19 56180994 56180994 G C U2AF2 Missense_Mutation p.G410A 0.19 deleterious(0.03) probably_damaging(0.971) TCGA-37-3792-01 19 56235411 56235411 G C NLRP9 Silent p.S698S 0.23 TCGA-37-3792-01 19 56244170 56244170 C A NLRP9 Missense_Mutation p.V343F 0.21 tolerated(0.08) possibly_damaging(0.894) TCGA-37-3792-01 19 56329325 56329325 T C NLRP11 Missense_Mutation p.I72M 0.34 tolerated(0.09) possibly_damaging(0.525) TCGA-37-3792-01 19 57286009 57286009 G T ZIM2 3'UTR 0.32 TCGA-37-3792-01 19 57293334 57293334 G T ZIM2 Missense_Mutation p.N211K 0.27 deleterious(0) probably_damaging(0.979) TCGA-37-3792-01 19 6734226 6734226 G T GPR108 Missense_Mutation p.P156Q 0.47 tolerated(0.23) benign(0.04) TCGA-37-3792-01 19 6937643 6937643 C T EMR1 Missense_Mutation p.P880L 0.46 tolerated(0.06) benign(0.015) TCGA-37-3792-01 19 6972331 6972331 C A EMR4P RNA 0.40 TCGA-37-3792-01 19 8999515 8999515 G A MUC16 Missense_Mutation p.R13554C 0.39 probably_damaging(0.999) TCGA-37-3792-01 19 9076794 9076794 G C MUC16 Nonsense_Mutation p.S3551* 0.25 TCGA-37-3792-01 19 9077163 9077163 G C MUC16 Missense_Mutation p.S3428C 0.20 unknown(0) TCGA-37-3792-01 19 9091149 9091149 A T MUC16 Silent p.T222T 0.31 TCGA-37-3792-01 1 101203837 101203837 T C VCAM1 Nonstop_Mutation p.*740Qext*30 0.17 TCGA-37-3792-01 1 10165591 10165591 G T UBE4B Missense_Mutation p.D200Y 0.24 deleterious(0) possibly_damaging(0.861) TCGA-37-3792-01 1 102296266 102296266 C G OLFM3 Missense_Mutation p.E112Q 0.29 tolerated(0.4) probably_damaging(0.996) TCGA-37-3792-01 1 10239588 10239588 G T UBE4B Missense_Mutation p.R1272L 0.24 deleterious(0) probably_damaging(1) TCGA-37-3792-01 1 103364269 103364269 C G COL11A1 Missense_Mutation p.A1401P 0.17 unknown(0) TCGA-37-3792-01 1 10338129 10338129 G T KIF1B Nonsense_Mutation p.E369* 0.13 TCGA-37-3792-01 1 103427757 103427757 C A COL11A1 Missense_Mutation p.G1030V 0.23 unknown(0) TCGA-37-3792-01 1 103431068 103431068 C A COL11A1 Missense_Mutation p.G964V 0.14 unknown(0) TCGA-37-3792-01 1 10397551 10397551 G T KIF1B Nonsense_Mutation p.G1082* 0.20 TCGA-37-3792-01 1 107867471 107867471 G T NTNG1 Missense_Mutation p.G272W 0.15 deleterious(0) probably_damaging(1) TCGA-37-3792-01 1 108160215 108160215 T G VAV3 Missense_Mutation p.S652R 0.14 tolerated(0.11) possibly_damaging(0.809) TCGA-37-3792-01 1 109373215 109373215 G T AKNAD1 Missense_Mutation p.P602T 0.12 deleterious(0.04) possibly_damaging(0.802) TCGA-37-3792-01 1 109553538 109553538 C A WDR47 Missense_Mutation p.R384L 0.09 tolerated(0.22) benign(0.003) TCGA-37-3792-01 1 11129767 11129767 C T EXOSC10 Silent p.K779K 0.24 TCGA-37-3792-01 1 111495155 111495155 T A LRIF1 Missense_Mutation p.K117N 0.31 tolerated(0.78) possibly_damaging(0.895) TCGA-37-3792-01 1 111861121 111861121 G T CHIA Missense_Mutation p.V246F 0.37 deleterious(0) possibly_damaging(0.813) TCGA-37-3792-01 1 115110847 115110847 C A BCAS2 Missense_Mutation p.E194D 0.27 tolerated(0.07) benign(0.065) TCGA-37-3792-01 1 116380640 116380640 G C NHLH2 Missense_Mutation p.I118M 0.34 deleterious(0) probably_damaging(0.999) TCGA-37-3792-01 1 116609703 116609703 G T SLC22A15 Missense_Mutation p.D540Y 0.12 deleterious_low_confidence(0.04) benign(0.106) TCGA-37-3792-01 1 117087182 117087182 C A CD58 Missense_Mutation p.G39W 0.15 deleterious(0.01) possibly_damaging(0.856) TCGA-37-3792-01 1 118567942 118567942 C A SPAG17 Missense_Mutation p.M1276I 0.15 tolerated(0.05) benign(0.037) TCGA-37-3792-01 1 118617191 118617191 C G SPAG17 Missense_Mutation p.A748P 0.26 tolerated(0.06) benign(0.093) TCGA-37-3792-01 1 12639357 12639357 G A DHRS3 Silent p.L141L 0.17 TCGA-37-3792-01 1 12955391 12955391 C G PRAMEF10 Splice_Site p.X96_splice 0.33 TCGA-37-3792-01 1 13718421 13718421 T A PRAMEF17 Nonsense_Mutation p.L295* 0.18 TCGA-37-3792-01 1 144880808 144880808 C A PDE4DIP Missense_Mutation p.D1274Y 0.18 deleterious(0) probably_damaging(1) TCGA-37-3792-01 1 145473635 145473635 G C ANKRD34A Missense_Mutation p.D103H 0.28 deleterious(0) probably_damaging(0.999) TCGA-37-3792-01 1 145474637 145474637 C A ANKRD34A Missense_Mutation p.P437T 0.27 deleterious(0) benign(0.228) TCGA-37-3792-01 1 150259369 150259369 C T C1orf51 3'UTR 0.26 TCGA-37-3792-01 1 150812052 150812052 G A ARNT Silent p.P117P 0.31 TCGA-37-3792-01 1 151065737 151065737 C T GABPB2 Missense_Mutation p.H116Y 0.33 deleterious(0) probably_damaging(0.915) TCGA-37-3792-01 1 151131380 151131380 G A TNFAIP8L2 Silent p.K69K 0.25 TCGA-37-3792-01 1 152324799 152324799 T A FLG2 Silent p.S1821S 0.30 TCGA-37-3792-01 1 152383126 152383126 G A CRNN Silent p.S144S 0.24 TCGA-37-3792-01 1 152636611 152636612 CC A LCE2D Nonsense_Mutation p.C10* 0.19 TCGA-37-3792-01 1 152648806 152648806 C T LCE2C Silent p.S105S 0.32 TCGA-37-3792-01 1 153312958 153312958 A T PGLYRP4 Silent p.T241T 0.24 TCGA-37-3792-01 1 153615741 153615741 C T CHTOP Nonsense_Mutation p.R148* 0.38 TCGA-37-3792-01 1 153742766 153742766 C G INTS3 Missense_Mutation p.L828V 0.28 tolerated(0.1) possibly_damaging(0.81) TCGA-37-3792-01 1 15392378 15392378 G C KAZN Intron 0.27 TCGA-37-3792-01 1 154223704 154223704 G T UBAP2L Silent p.S467S 0.21 TCGA-37-3792-01 1 154294443 154294443 C T AQP10 Missense_Mutation p.T47I 0.19 tolerated(0.08) probably_damaging(0.998) TCGA-37-3792-01 1 156531776 156531776 C T IQGAP3 Missense_Mutation p.V299I 0.30 tolerated(0.2) benign(0.002) TCGA-37-3792-01 1 156639149 156639149 C A NES Nonsense_Mutation p.G1611* 0.27 TCGA-37-3792-01 1 157497632 157497632 C A FCRL5 Missense_Mutation p.V579L 0.37 tolerated(0.08) probably_damaging(0.964) TCGA-37-3792-01 1 157497633 157497633 C A FCRL5 Silent p.V578V 0.36 TCGA-37-3792-01 1 157803183 157803183 C A CD5L Missense_Mutation p.V280L 0.28 deleterious(0.01) probably_damaging(0.923) TCGA-37-3792-01 1 158260981 158260981 C G CD1C Missense_Mutation p.S40C 0.29 deleterious(0) possibly_damaging(0.814) TCGA-37-3792-01 1 158389882 158389882 A C OR10K2 Missense_Mutation p.Y259D 0.24 deleterious(0) probably_damaging(1) TCGA-37-3792-01 1 158576881 158576881 A G OR10Z1 Missense_Mutation p.Y218C 0.25 deleterious(0) probably_damaging(0.999) TCGA-37-3792-01 1 158576884 158576884 C T OR10Z1 Missense_Mutation p.A219V 0.25 tolerated(1) benign(0.006) TCGA-37-3792-01 1 158639525 158639525 C A SPTA1 Nonsense_Mutation p.E551* 0.25 TCGA-37-3792-01 1 159162460 159162460 T A CADM3 Missense_Mutation p.Y142N 0.26 deleterious(0) probably_damaging(1) TCGA-37-3792-01 1 159162462 159162462 C A CADM3 Nonsense_Mutation p.Y142* 0.28 TCGA-37-3792-01 1 159505743 159505743 T C OR10J5 Missense_Mutation p.S19G 0.12 tolerated(0.08) benign(0.005) TCGA-37-3792-01 1 159846451 159846451 G T CCDC19 Missense_Mutation p.T416K 0.21 tolerated(0.22) possibly_damaging(0.493) TCGA-37-3792-01 1 160098878 160098878 A T ATP1A2 Missense_Mutation p.K442M 0.30 deleterious(0.01) benign(0.081) TCGA-37-3792-01 1 161049528 161049528 G A PVRL4 Silent p.R97R 0.29 TCGA-37-3792-01 1 161130996 161130996 G T USP21 Missense_Mutation p.R189L 0.24 tolerated_low_confidence(0.18) benign(0.019) TCGA-37-3792-01 1 161130997 161130997 G T USP21 Silent p.R189R 0.24 TCGA-37-3792-01 1 16767207 16767207 C T NECAP2 5'Flank 0.33 TCGA-37-3792-01 1 170916678 170916678 C A MROH9 Silent p.L12L 0.27 TCGA-37-3792-01 1 171174727 171174727 C T FMO2 Silent p.F379F 0.19 TCGA-37-3792-01 1 171250110 171250110 A C FMO1 Missense_Mutation p.L271F 0.13 deleterious(0) probably_damaging(0.932) TCGA-37-3792-01 1 175105063 175105063 A T TNN Missense_Mutation p.K1138M 0.44 tolerated(0.06) possibly_damaging(0.813) TCGA-37-3792-01 1 175335057 175335057 C T TNR Silent p.E757E 0.22 TCGA-37-3792-01 1 176050366 176050366 G C RFWD2 Missense_Mutation p.T400S 0.36 tolerated(0.2) benign(0.241) TCGA-37-3792-01 1 176679263 176679263 A G PAPPA2 Missense_Mutation p.D1201G 0.31 deleterious(0) probably_damaging(0.999) TCGA-37-3792-01 1 176918404 176918404 G A ASTN1 Silent p.N657N 0.29 TCGA-37-3792-01 1 176927480 176927480 C G ASTN1 Splice_Site p.X579_splice 0.30 TCGA-37-3792-01 1 178269133 178269133 G T RASAL2 Missense_Mutation p.V113L 0.38 tolerated(0.77) benign(0.007) TCGA-37-3792-01 1 179308682 179308682 T C SOAT1 Splice_Site p.X166_splice 0.16 TCGA-37-3792-01 1 179502966 179502966 T A AXDND1 Missense_Mutation p.Y918N 0.39 tolerated(0.21) possibly_damaging(0.86) TCGA-37-3792-01 1 181707531 181707531 C A CACNA1E Missense_Mutation p.T1194K 0.14 deleterious(0) benign(0.075) TCGA-37-3792-01 1 186007152 186007152 G - HMCN1 Frame_Shift_Del p.G1946Efs*22 0.24 TCGA-37-3792-01 1 186092086 186092086 C A HMCN1 Missense_Mutation p.P4078H 0.18 probably_damaging(0.998) TCGA-37-3792-01 1 186092087 186092087 T A HMCN1 Silent p.P4078P 0.16 TCGA-37-3792-01 1 186106668 186106668 T C HMCN1 Missense_Mutation p.C4541R 0.24 probably_damaging(0.996) TCGA-37-3792-01 1 186157136 186157136 T C HMCN1 Silent p.V5512V 0.19 TCGA-37-3792-01 1 196758861 196758861 G T CFHR3 Intron 0.38 TCGA-37-3792-01 1 197390287 197390287 G T CRB1 Silent p.L443L 0.39 TCGA-37-3792-01 1 197391024 197391024 A G CRB1 Missense_Mutation p.N689S 0.28 deleterious(0) probably_damaging(0.999) TCGA-37-3792-01 1 203140269 203140269 G A MYBPH Missense_Mutation p.L285F 0.11 deleterious(0.01) probably_damaging(1) TCGA-37-3792-01 1 203188890 203188890 G T CHIT1 Missense_Mutation p.L273M 0.19 deleterious(0) probably_damaging(1) TCGA-37-3792-01 1 203316738 203316738 C T FMOD Missense_Mutation p.G221S 0.17 tolerated(0.13) possibly_damaging(0.896) TCGA-37-3792-01 1 20474887 20474887 C T PLA2G2F Missense_Mutation p.P210L 0.29 tolerated_low_confidence(0.21) benign(0.017) TCGA-37-3792-01 1 207644833 207644833 G T CR2 Missense_Mutation p.R520L 0.16 deleterious(0) benign(0.033) TCGA-37-3792-01 1 2087531 2087531 G T PRKCZ Missense_Mutation p.R325L 0.23 deleterious(0) probably_damaging(0.998) TCGA-37-3792-01 1 2087532 2087532 G T PRKCZ Splice_Site p.X325_splice 0.21 TCGA-37-3792-01 1 214170308 214170308 T A PROX1 Missense_Mutation p.F144I 0.24 tolerated(0.4) benign(0.193) TCGA-37-3792-01 1 214170386 214170386 G T PROX1 Nonsense_Mutation p.E170* 0.25 TCGA-37-3792-01 1 220809198 220809198 G T MARK1 Missense_Mutation p.V434L 0.12 tolerated(0.34) possibly_damaging(0.625) TCGA-37-3792-01 1 228496833 228496833 A T OBSCN Missense_Mutation p.D5215V 0.30 probably_damaging(0.994) TCGA-37-3792-01 1 230400987 230400987 G T GALNT2 Missense_Mutation p.R438S 0.17 tolerated(0.21) benign(0.002) TCGA-37-3792-01 1 231696947 231696947 A C TSNAX Missense_Mutation p.E147D 0.13 tolerated(0.11) benign(0.009) TCGA-37-3792-01 1 234367345 234367345 G A SLC35F3 Missense_Mutation p.A156T 0.24 tolerated(0.19) probably_damaging(0.95) TCGA-37-3792-01 1 236212251 236212251 C A NID1 Silent p.P88P 0.31 TCGA-37-3792-01 1 23689326 23689326 C G ZNF436 Missense_Mutation p.Q183H 0.20 tolerated(0.14) probably_damaging(0.981) TCGA-37-3792-01 1 237167636 237167636 A T MT1HL1 Missense_Mutation p.Y13N 0.31 deleterious(0.01) unknown(0) TCGA-37-3792-01 1 237758806 237758806 G - RYR2 Frame_Shift_Del p.R1482Pfs*13 0.16 TCGA-37-3792-01 1 237837481 237837481 C G RYR2 Missense_Mutation p.I2892M 0.16 probably_damaging(0.937) TCGA-37-3792-01 1 237947735 237947735 C T RYR2 Silent p.V4241V 0.23 TCGA-37-3792-01 1 238048612 238048612 G T ZP4 Nonsense_Mutation p.C388* 0.24 TCGA-37-3792-01 1 238053829 238053829 G - ZP4 Frame_Shift_Del p.P36Rfs*8 0.28 TCGA-37-3792-01 1 23885707 23885707 G T ID3 Missense_Mutation p.Q71K 0.15 deleterious(0) probably_damaging(0.982) TCGA-37-3792-01 1 240071434 240071434 A T CHRM3 Missense_Mutation p.E228V 0.19 deleterious(0.03) benign(0.016) TCGA-37-3792-01 1 242287875 242287875 T G PLD5 Missense_Mutation p.K276N 0.31 tolerated(0.18) probably_damaging(0.99) TCGA-37-3792-01 1 243504369 243504369 A T SDCCAG8 Missense_Mutation p.Q417L 0.31 tolerated(0.15) possibly_damaging(0.457) TCGA-37-3792-01 1 24434514 24434514 G T MYOM3 Missense_Mutation p.L71M 0.29 deleterious(0.05) benign(0.11) TCGA-37-3792-01 1 246729395 246729395 C A TFB2M Missense_Mutation p.A16S 0.40 tolerated(0.26) benign(0.062) TCGA-37-3792-01 1 247615216 247615216 G C OR2B11 Missense_Mutation p.D23E 0.44 tolerated(0.1) benign(0.301) TCGA-37-3792-01 1 247737462 247737462 T A GCSAML Missense_Mutation p.S62R 0.32 deleterious(0.04) benign(0.015) TCGA-37-3792-01 1 247835815 247835815 C A OR13G1 Nonsense_Mutation p.E177* 0.15 TCGA-37-3792-01 1 248085175 248085175 C A OR2T8 Missense_Mutation p.L286I 0.15 deleterious(0.05) benign(0.033) TCGA-37-3792-01 1 248457966 248457966 C G OR2T12 Silent p.T305T 0.29 TCGA-37-3792-01 1 248525194 248525194 G A OR2T4 Silent p.A104A 0.11 TCGA-37-3792-01 1 249212268 249212268 C T PGBD2 Silent p.L495L 0.08 TCGA-37-3792-01 1 2493171 2493171 G T TNFRSF14 Missense_Mutation p.W204L 0.16 tolerated(0.65) benign(0.024) TCGA-37-3792-01 1 26524181 26524181 G T CATSPER4 Missense_Mutation p.G155V 0.23 deleterious(0) probably_damaging(0.992) TCGA-37-3792-01 1 27121146 27121146 G C PIGV Silent p.L207L 0.23 TCGA-37-3792-01 1 31188838 31188838 C A MATN1 Silent p.G375G 0.19 TCGA-37-3792-01 1 31821753 31821753 G A ZCCHC17 Missense_Mutation p.E166K 0.15 tolerated(0.24) benign(0.213) TCGA-37-3792-01 1 32713219 32713220 GA T FAM167B Frame_Shift_Del p.G66Vfs*46 0.23 TCGA-37-3792-01 1 33160669 33160669 C A SYNC Nonsense_Mutation p.E344* 0.37 TCGA-37-3792-01 1 33583523 33583523 C G ADC Silent p.P350P 0.12 TCGA-37-3792-01 1 33797985 33797985 C A PHC2 Silent p.L593L 0.26 TCGA-37-3792-01 1 35863146 35863146 G A ZMYM4 Missense_Mutation p.E1067K 0.24 tolerated(0.93) benign(0.004) TCGA-37-3792-01 1 38034800 38034800 T G GNL2 Missense_Mutation p.K507T 0.16 tolerated(0.38) benign(0.012) TCGA-37-3792-01 1 39896554 39896554 G A MACF1 Missense_Mutation p.D3709N 0.14 probably_damaging(0.951) TCGA-37-3792-01 1 39907859 39907859 A T MACF1 Missense_Mutation p.E4213V 0.17 probably_damaging(1) TCGA-37-3792-01 1 41499668 41499668 T C SCMH1 Silent p.L567L 0.12 TCGA-37-3792-01 1 47399674 47399674 A G CYP4A11 Missense_Mutation p.I389T 0.13 deleterious(0.02) benign(0.158) TCGA-37-3792-01 1 48694995 48694995 G C SLC5A9 Missense_Mutation p.W148S 0.25 deleterious(0) probably_damaging(0.998) TCGA-37-3792-01 1 53446174 53446174 A T SCP2 Missense_Mutation p.N311I 0.15 deleterious(0) probably_damaging(1) TCGA-37-3792-01 1 54692814 54692814 A T SSBP3 Missense_Mutation p.M386K 0.24 deleterious_low_confidence(0) benign(0.342) TCGA-37-3792-01 1 55224214 55224214 C A PARS2 Missense_Mutation p.K207N 0.19 deleterious(0) probably_damaging(0.997) TCGA-37-3792-01 1 55529165 55529165 A G PCSK9 Missense_Mutation p.T663A 0.29 tolerated(0.66) benign(0.001) TCGA-37-3792-01 1 6194222 6194222 C A CHD5 Missense_Mutation p.R1037L 0.30 deleterious(0) benign(0.155) TCGA-37-3792-01 1 62321807 62321807 G T INADL Missense_Mutation p.V740F 0.16 deleterious(0) probably_damaging(0.998) TCGA-37-3792-01 1 67558955 67558955 A T C1orf141 Missense_Mutation p.N312K 0.42 tolerated(0.26) possibly_damaging(0.859) TCGA-37-3792-01 1 70482217 70482217 G T LRRC7 Missense_Mutation p.Q402H 0.46 deleterious(0) probably_damaging(0.993) TCGA-37-3792-01 1 70504186 70504186 G C LRRC7 Missense_Mutation p.R855S 0.17 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-37-3792-01 1 70504328 70504328 A G LRRC7 Missense_Mutation p.R903G 0.11 deleterious_low_confidence(0) possibly_damaging(0.585) TCGA-37-3792-01 1 70518813 70518813 C T LRRC7 Silent p.D1367D 0.45 TCGA-37-3792-01 1 70541827 70541827 C A LRRC7 Missense_Mutation p.P1395Q 0.41 tolerated(0.33) benign(0.008) TCGA-37-3792-01 1 71873037 71873037 A T NEGR1 3'UTR 0.33 TCGA-37-3792-01 1 74957949 74957949 A G TNNI3K Missense_Mutation p.S885G 0.14 deleterious_low_confidence(0) benign(0.008) TCGA-37-3792-01 1 75037147 75037147 G T C1orf173 Missense_Mutation p.P1416Q 0.59 tolerated(0.05) possibly_damaging(0.452) TCGA-37-3792-01 1 75097471 75097471 T A C1orf173 Nonsense_Mutation p.R249* 0.11 TCGA-37-3792-01 1 75626594 75626594 G T LHX8 3'UTR 0.37 TCGA-37-3792-01 1 76194161 76194161 G A ACADM Missense_Mutation p.G40R 0.11 deleterious(0) possibly_damaging(0.887) TCGA-37-3792-01 1 77632504 77632504 C G PIGK Missense_Mutation p.E129D 0.46 deleterious(0.01) benign(0.424) TCGA-37-3792-01 1 82418696 82418696 G T LPHN2 Intron 0.21 TCGA-37-3792-01 1 82434869 82434869 A C LPHN2 Missense_Mutation p.D827A 0.17 tolerated(0.3) benign(0.037) TCGA-37-3792-01 1 86283716 86283716 C A COL24A1 Splice_Site p.X1281_splice 0.19 TCGA-37-3792-01 1 86894204 86894204 C A CLCA2 Missense_Mutation p.P143H 0.17 deleterious(0) probably_damaging(0.962) TCGA-37-3792-01 1 86920811 86920811 C A CLCA2 Silent p.I811I 0.08 TCGA-37-3792-01 1 89654369 89654369 T A GBP4 Missense_Mutation p.I436F 0.18 deleterious(0.01) probably_damaging(0.988) TCGA-37-3792-01 1 90048411 90048411 G T LRRC8B Missense_Mutation p.V68L 0.15 tolerated(0.63) benign(0.052) TCGA-37-3792-01 1 91182524 91182524 G A BARHL2 Silent p.L77L 0.31 TCGA-37-3792-01 1 91406433 91406433 C A ZNF644 Missense_Mutation p.D160Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-37-3792-01 1 93160896 93160896 T C EVI5 Missense_Mutation p.T338A 0.12 tolerated(0.09) benign(0.016) TCGA-37-3792-01 1 9782210 9782210 T C PIK3CD Missense_Mutation p.C745R 0.44 tolerated(0.37) possibly_damaging(0.726) TCGA-37-3792-01 1 9811540 9811540 C G CLSTN1 Missense_Mutation p.D214H 0.27 deleterious(0) probably_damaging(0.994) TCGA-37-3792-01 1 985330 985330 C T AGRN Missense_Mutation p.H1598Y 0.26 deleterious(0) probably_damaging(0.91) TCGA-37-3792-01 1 99771760 99771760 G A LPPR4 Missense_Mutation p.G496S 0.37 tolerated(0.18) benign(0.146) TCGA-37-3792-01 20 17641123 17641123 C A RRBP1 Silent p.G10G 0.13 TCGA-37-3792-01 20 1902083 1902083 C A SIRPA Missense_Mutation p.A160D 0.15 deleterious(0) possibly_damaging(0.847) TCGA-37-3792-01 20 23669466 23669466 G T CST4 Silent p.A47A 0.19 TCGA-37-3792-01 20 23858142 23858142 C A CST5 Missense_Mutation p.E115D 0.26 deleterious(0) benign(0.108) TCGA-37-3792-01 20 23860160 23860160 T A CST5 Missense_Mutation p.I52F 0.19 deleterious(0.01) probably_damaging(0.953) TCGA-37-3792-01 20 23860161 23860161 G T CST5 Silent p.A51A 0.19 TCGA-37-3792-01 20 24523955 24523955 G A SYNDIG1 Silent p.L74L 0.27 TCGA-37-3792-01 20 24524193 24524193 G T SYNDIG1 Nonsense_Mutation p.E154* 0.17 TCGA-37-3792-01 20 25003601 25003601 A G ACSS1 Missense_Mutation p.L312P 0.42 deleterious(0) probably_damaging(0.998) TCGA-37-3792-01 20 30053409 30053409 G T DEFB124 Missense_Mutation p.T39K 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.478) TCGA-37-3792-01 20 34611577 34611577 C A CNBD2 Silent p.I437I 0.24 TCGA-37-3792-01 20 37182618 37182618 G C RALGAPB Missense_Mutation p.D1091H 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-37-3792-01 20 40080591 40080591 A T CHD6 Missense_Mutation p.I1133N 0.29 deleterious(0) probably_damaging(0.992) TCGA-37-3792-01 20 40709556 40709556 A G PTPRT Missense_Mutation p.V1430A 0.19 deleterious(0) benign(0.138) TCGA-37-3792-01 20 40979267 40979267 C A PTPRT Splice_Site p.X622_splice 0.24 TCGA-37-3792-01 20 42328511 42328511 G C MYBL2 Missense_Mutation p.D260H 0.23 tolerated(0.2) benign(0.005) TCGA-37-3792-01 20 43030005 43030005 C T HNF4A 5'UTR 0.33 TCGA-37-3792-01 20 43851768 43851768 G T SEMG2 Nonsense_Mutation p.E499* 0.29 TCGA-37-3792-01 20 43933382 43933382 G A MATN4 Silent p.R43R 0.31 TCGA-37-3792-01 20 44641157 44641157 G A MMP9 Missense_Mutation p.M422I 0.21 tolerated(0.3) benign(0.209) TCGA-37-3792-01 20 45644855 45644855 G T EYA2 Missense_Mutation p.G112C 0.26 deleterious(0.05) possibly_damaging(0.878) TCGA-37-3792-01 20 51872438 51872438 C G TSHZ2 Missense_Mutation p.S814C 0.30 deleterious(0) possibly_damaging(0.759) TCGA-37-3792-01 20 52645393 52645393 C A BCAS1 Missense_Mutation p.E87D 0.41 tolerated(0.28) benign(0.408) TCGA-37-3792-01 20 55982878 55982878 G C RBM38 Missense_Mutation p.Q232H 0.38 deleterious_low_confidence(0.03) benign(0.436) TCGA-37-3792-01 20 61982174 61982174 G T CHRNA4 Missense_Mutation p.R197S 0.36 tolerated(0.41) possibly_damaging(0.843) TCGA-37-3792-01 20 61982175 61982175 G T CHRNA4 Missense_Mutation p.S196R 0.35 tolerated(0.15) benign(0.027) TCGA-37-3792-01 20 62221647 62221647 T A GMEB2 Missense_Mutation p.Q463L 0.17 deleterious(0) probably_damaging(0.996) TCGA-37-3792-01 20 62697667 62697667 G C TCEA2 Intron 0.45 TCGA-37-3792-01 21 10942749 10942749 G T TPTE Missense_Mutation p.T231K 0.36 tolerated(1) benign(0.01) TCGA-37-3792-01 21 15592035 15592035 A T RBM11 Missense_Mutation p.Q83L 0.18 deleterious(0) probably_damaging(0.985) TCGA-37-3792-01 21 19169370 19169370 A G C21orf91 Missense_Mutation p.Y65H 0.18 deleterious(0) possibly_damaging(0.789) TCGA-37-3792-01 21 27423437 27423437 C T APP Missense_Mutation p.G181R 0.25 deleterious(0) unknown(0) TCGA-37-3792-01 21 28212083 28212083 T A ADAMTS1 Splice_Site p.X618_splice 0.48 TCGA-37-3792-01 21 36206875 36206875 G C RUNX1 Missense_Mutation p.Q213E 0.32 tolerated(0.14) benign(0.006) TCGA-37-3792-01 21 40571114 40571114 G A BRWD1 Missense_Mutation p.P1743L 0.26 tolerated_low_confidence(0.2) benign(0.003) TCGA-37-3792-01 21 45656877 45656877 C A ICOSLG Silent p.R93R 0.28 TCGA-37-3792-01 21 46066897 46066897 C - KRTAP10-11 Frame_Shift_Del p.Q175Sfs*133 0.22 TCGA-37-3792-01 21 46380028 46380028 G T FAM207A Missense_Mutation p.K99N 0.21 deleterious(0) probably_damaging(0.972) TCGA-37-3792-01 21 47418314 47418314 G T COL6A1 Silent p.G526G 0.20 TCGA-37-3792-01 21 47981660 47981660 G T DIP2A Splice_Site p.X1344_splice 0.17 TCGA-37-3792-01 22 16256604 16256604 A T POTEH 3'UTR 0.09 TCGA-37-3792-01 22 16287512 16287512 T A POTEH Missense_Mutation p.D125V 0.17 deleterious_low_confidence(0) possibly_damaging(0.696) TCGA-37-3792-01 22 18644643 18644643 G A USP18 Missense_Mutation p.R114Q 0.50 deleterious(0.01) possibly_damaging(0.903) TCGA-37-3792-01 22 22764343 22764343 G T IGLV1-40 Missense_Mutation p.V29L 0.52 deleterious_low_confidence(0.01) benign(0.076) TCGA-37-3792-01 22 31363905 31363905 C A MORC2 5'UTR 0.38 TCGA-37-3792-01 22 32756560 32756560 C T RFPL3 Missense_Mutation p.P232L 0.44 deleterious(0.01) probably_damaging(1) TCGA-37-3792-01 2 10073964 10073964 C G TAF1B Missense_Mutation p.Q540E 0.15 tolerated(0.27) benign(0.156) TCGA-37-3792-01 2 106015361 106015361 C A FHL2 5'UTR 0.33 TCGA-37-3792-01 2 116497379 116497379 G T DPP10 Silent p.L258L 0.28 TCGA-37-3792-01 2 116598340 116598340 C T DPP10 Nonsense_Mutation p.Q737* 0.17 TCGA-37-3792-01 2 11919771 11919771 G T LPIN1 Missense_Mutation p.K368N 0.38 deleterious(0) possibly_damaging(0.461) TCGA-37-3792-01 2 11943032 11943032 G T LPIN1 Splice_Site p.X678_splice 0.13 TCGA-37-3792-01 2 119739825 119739825 G T MARCO Missense_Mutation p.R332L 0.35 tolerated(1) unknown(0) TCGA-37-3792-01 2 120438700 120438700 G T TMEM177 Missense_Mutation p.V91L 0.41 tolerated(0.05) benign(0.309) TCGA-37-3792-01 2 128477003 128477003 G - WDR33 Frame_Shift_Del p.Q866Rfs*4 0.11 TCGA-37-3792-01 2 131521033 131521033 G A AMER3 Missense_Mutation p.R463Q 0.29 deleterious(0) benign(0.211) TCGA-37-3792-01 2 135744144 135744144 G T MAP3K19 Missense_Mutation p.D766E 0.33 tolerated(0.38) benign(0.015) TCGA-37-3792-01 2 137988644 137988644 T A THSD7B Missense_Mutation p.V585D 0.11 tolerated(1) possibly_damaging(0.683) TCGA-37-3792-01 2 145157078 145157078 A G ZEB2 Missense_Mutation p.L559P 0.19 tolerated(0.24) benign(0.012) TCGA-37-3792-01 2 152476109 152476109 C A NEB Silent p.V3576V 0.10 TCGA-37-3792-01 2 152544232 152544232 C A NEB Missense_Mutation p.D811Y 0.27 probably_damaging(1) TCGA-37-3792-01 2 152711847 152711847 C G CACNB4 Missense_Mutation p.R304T 0.25 deleterious(0.01) probably_damaging(0.995) TCGA-37-3792-01 2 160255357 160255357 C G BAZ2B Missense_Mutation p.A983P 0.17 probably_damaging(0.999) TCGA-37-3792-01 2 160714922 160714922 C A LY75-CD302 Missense_Mutation p.R778S 0.17 deleterious(0.03) benign(0.005) TCGA-37-3792-01 2 164466106 164466106 C G FIGN Missense_Mutation p.D746H 0.10 deleterious(0) probably_damaging(0.972) TCGA-37-3792-01 2 165947115 165947115 G T SCN3A Missense_Mutation p.L1850I 0.31 deleterious(0.01) probably_damaging(0.993) TCGA-37-3792-01 2 165995997 165995997 T A SCN3A Missense_Mutation p.N714I 0.34 deleterious(0.04) probably_damaging(0.999) TCGA-37-3792-01 2 166166868 166166868 G T SCN2A Missense_Mutation p.V245L 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-37-3792-01 2 166894640 166894640 C G SCN1A Silent p.L864L 0.28 TCGA-37-3792-01 2 166900387 166900387 C T SCN1A Missense_Mutation p.R612Q 0.20 tolerated(0.34) benign(0.003) TCGA-37-3792-01 2 166911188 166911188 C A SCN1A Missense_Mutation p.D188Y 0.43 deleterious(0) probably_damaging(1) TCGA-37-3792-01 2 167149845 167149845 T A SCN9A Nonsense_Mutation p.R335* 0.21 TCGA-37-3792-01 2 168097237 168097237 C A XIRP2 Missense_Mutation p.Q345K 0.27 possibly_damaging(0.64) TCGA-37-3792-01 2 171806181 171806181 C T GORASP2 Nonsense_Mutation p.Q93* 0.14 TCGA-37-3792-01 2 175624083 175624083 C A CHRNA1 Silent p.V70V 0.17 TCGA-37-3792-01 2 176965269 176965269 C A HOXD12 Silent p.A198A 0.50 TCGA-37-3792-01 2 177036815 177036815 G T HOXD3 Missense_Mutation p.G371V 0.29 deleterious(0.01) probably_damaging(0.993) TCGA-37-3792-01 2 179440359 179440359 A T TTN Silent p.S23500S 0.20 TCGA-37-3792-01 2 179440792 179440792 A T TTN Missense_Mutation p.V23356D 0.33 TCGA-37-3792-01 2 179449612 179449612 C A TTN Nonsense_Mutation p.E21586* 0.32 TCGA-37-3792-01 2 179463874 179463874 G T TTN Missense_Mutation p.F18882L 0.17 TCGA-37-3792-01 2 179485485 179485485 G T TTN Missense_Mutation p.H15284Q 0.30 TCGA-37-3792-01 2 179615158 179615158 A T TTN Intron 0.15 TCGA-37-3792-01 2 17961888 17961888 G T GEN1 Missense_Mutation p.R470L 0.32 deleterious(0) benign(0.015) TCGA-37-3792-01 2 180016073 180016073 A G SESTD1 Missense_Mutation p.C139R 0.23 tolerated(0.14) benign(0.035) TCGA-37-3792-01 2 182343484 182343484 A G ITGA4 Missense_Mutation p.D186G 0.36 tolerated(0.05) possibly_damaging(0.851) TCGA-37-3792-01 2 182543563 182543563 C G NEUROD1 Missense_Mutation p.G9R 0.16 tolerated(0.24) benign(0.159) TCGA-37-3792-01 2 182780746 182780746 G C SSFA2 Missense_Mutation p.Q793H 0.29 tolerated(0.07) benign(0.011) TCGA-37-3792-01 2 185802586 185802586 C A ZNF804A Silent p.P821P 0.17 TCGA-37-3792-01 2 190571670 190571670 G A ANKAR Silent p.Q639Q 0.11 TCGA-37-3792-01 2 1982965 1982965 C T MYT1L Missense_Mutation p.V42I 0.50 tolerated(0.59) unknown(0) TCGA-37-3792-01 2 201342686 201342686 C T SPATS2L Missense_Mutation p.P537S 0.09 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-37-3792-01 2 201502966 201502966 G C AOX1 Missense_Mutation p.E837Q 0.15 deleterious(0) possibly_damaging(0.891) TCGA-37-3792-01 2 202005085 202005085 G T CFLAR Nonsense_Mutation p.G177* 0.15 TCGA-37-3792-01 2 202131211 202131211 T C CASP8 Missense_Mutation p.M60T 0.19 deleterious(0) probably_damaging(0.999) TCGA-37-3792-01 2 206036960 206036960 A T PARD3B Missense_Mutation p.Q487L 0.26 deleterious(0) probably_damaging(0.999) TCGA-37-3792-01 2 206988867 206988867 C G NDUFS1 3'UTR 0.31 TCGA-37-3792-01 2 210557562 210557562 T C MAP2 Missense_Mutation p.L223P 0.17 tolerated_low_confidence(1) benign(0.001) TCGA-37-3792-01 2 210559222 210559222 A G MAP2 Silent p.G776G 0.25 TCGA-37-3792-01 2 210642202 210642202 C T UNC80 Silent p.N173N 0.24 TCGA-37-3792-01 2 211464202 211464202 C A CPS1 Missense_Mutation p.P495H 0.22 deleterious(0) probably_damaging(0.982) TCGA-37-3792-01 2 21230058 21230058 T - APOB Frame_Shift_Del p.I3228Lfs*38 0.14 TCGA-37-3792-01 2 21247976 21247976 C G APOB Missense_Mutation p.M755I 0.25 benign(0.027) TCGA-37-3792-01 2 212587153 212587153 T A ERBB4 Missense_Mutation p.Y283F 0.23 tolerated(0.07) benign(0.287) TCGA-37-3792-01 2 215865731 215865731 C A ABCA12 Missense_Mutation p.K959N 0.13 tolerated(0.14) benign(0.098) TCGA-37-3792-01 2 217724287 217724287 T C TNP1 3'UTR 0.30 TCGA-37-3792-01 2 218999573 218999573 G A CXCR2 Missense_Mutation p.G17S 0.13 tolerated(0.44) benign(0) TCGA-37-3792-01 2 219878740 219878740 C T CCDC108 Missense_Mutation p.R1210Q 0.41 tolerated(1) benign(0) TCGA-37-3792-01 2 223917575 223917575 C A KCNE4 Missense_Mutation p.S9R 0.41 tolerated(0.11) possibly_damaging(0.617) TCGA-37-3792-01 2 225658169 225658169 G T DOCK10 Silent p.A1720A 0.12 TCGA-37-3792-01 2 228243898 228243898 A T TM4SF20 Silent p.P29P 0.08 TCGA-37-3792-01 2 234621783 234621783 G A UGT1A5 Missense_Mutation p.R49Q 0.25 tolerated(0.58) benign(0.012) TCGA-37-3792-01 2 234875311 234875311 A T TRPM8 Missense_Mutation p.Y646F 0.17 deleterious(0) benign(0.135) TCGA-37-3792-01 2 234894439 234894439 A G TRPM8 Missense_Mutation p.I957V 0.31 tolerated(0.82) possibly_damaging(0.712) TCGA-37-3792-01 2 237490217 237490217 G T ACKR3 3'UTR 0.31 TCGA-37-3792-01 2 238249536 238249536 C A COL6A3 Missense_Mutation p.V2675L 0.47 unknown(0) TCGA-37-3792-01 2 24090791 24090791 C A ATAD2B Nonsense_Mutation p.E368* 0.15 TCGA-37-3792-01 2 241570360 241570360 G A GPR35 3'UTR 0.24 TCGA-37-3792-01 2 242065916 242065917 AC - PASK Frame_Shift_Del p.V805* 0.33 TCGA-37-3792-01 2 25967074 25967074 C A ASXL2 Missense_Mutation p.R711I 0.18 tolerated(0.11) benign(0.434) TCGA-37-3792-01 2 26151763 26151763 C A KIF3C 3'UTR 0.47 TCGA-37-3792-01 2 26687846 26687846 G T OTOF Silent p.T1617T 0.32 TCGA-37-3792-01 2 27892228 27892228 C A SLC4A1AP Missense_Mutation p.T440N 0.14 tolerated(0.1) benign(0.101) TCGA-37-3792-01 2 31360913 31360913 C A GALNT14 Missense_Mutation p.G14W 0.11 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-37-3792-01 2 31467163 31467163 C T EHD3 Missense_Mutation p.P84L 0.09 deleterious(0.02) possibly_damaging(0.833) TCGA-37-3792-01 2 31483415 31483415 G T EHD3 Missense_Mutation p.R181L 0.51 deleterious(0) probably_damaging(0.983) TCGA-37-3792-01 2 32728141 32728141 A T BIRC6 Missense_Mutation p.T3113S 0.21 possibly_damaging(0.864) TCGA-37-3792-01 2 36623896 36623896 G C CRIM1 Missense_Mutation p.Q157H 0.13 tolerated(0.06) benign(0.002) TCGA-37-3792-01 2 37208680 37208681 - A HEATR5B Frame_Shift_Ins p.A2057Cfs*9 0.24 TCGA-37-3792-01 2 49191105 49191105 G A FSHR Silent p.I285I 0.23 TCGA-37-3792-01 2 50780163 50780163 C A NRXN1 Missense_Mutation p.V481F 0.24 deleterious(0) probably_damaging(1) TCGA-37-3792-01 2 54856534 54856534 G C SPTBN1 Missense_Mutation p.D755H 0.13 deleterious(0) probably_damaging(0.997) TCGA-37-3792-01 2 75745203 75745203 C A EVA1A Missense_Mutation p.A22S 0.11 deleterious(0.04) benign(0.009) TCGA-37-3792-01 2 80530748 80530748 C T LRRTM1 Missense_Mutation p.G66D 0.12 deleterious(0) benign(0.205) TCGA-37-3792-01 2 80801296 80801296 C G CTNNA2 Missense_Mutation p.R584G 0.10 tolerated(0.12) benign(0.434) TCGA-37-3792-01 2 85536168 85536168 G T TCF7L1 Missense_Mutation p.K450N 0.16 deleterious(0) benign(0.179) TCGA-37-3792-01 2 86830865 86830865 C T RNF103 3'UTR 0.14 TCGA-37-3792-01 2 90060881 90060881 G T IGKV6D-21 Silent p.G76G 0.21 TCGA-37-3792-01 2 97019114 97019114 G T NCAPH Missense_Mutation p.W327C 0.12 deleterious(0.04) probably_damaging(0.974) TCGA-37-3792-01 2 98428985 98428985 C A TMEM131 Missense_Mutation p.G588C 0.13 deleterious(0.03) probably_damaging(0.95) TCGA-37-3792-01 2 98736170 98736170 T A VWA3B Silent p.A162A 0.44 TCGA-37-3792-01 3 100962535 100962535 C G IMPG2 Silent p.V880V 0.22 TCGA-37-3792-01 3 107497324 107497324 A T BBX Nonsense_Mutation p.K721* 0.16 TCGA-37-3792-01 3 108160065 108160065 G T MYH15 Missense_Mutation p.L920M 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-37-3792-01 3 108407551 108407551 G T DZIP3 Missense_Mutation p.G1128C 0.35 deleterious(0.01) benign(0.044) TCGA-37-3792-01 3 115394878 115394878 G T GAP43 Missense_Mutation p.D53Y 0.27 deleterious(0) probably_damaging(0.994) TCGA-37-3792-01 3 115805196 115805196 G T LSAMP Silent p.T121T 0.33 TCGA-37-3792-01 3 118866140 118866140 G T C3orf30 Missense_Mutation p.Q368H 0.33 tolerated(0.05) benign(0.003) TCGA-37-3792-01 3 120876351 120876351 G A STXBP5L Missense_Mutation p.A252T 0.13 tolerated(0.17) probably_damaging(0.909) TCGA-37-3792-01 3 120957931 120957931 G T STXBP5L Missense_Mutation p.G433V 0.43 deleterious(0) probably_damaging(1) TCGA-37-3792-01 3 121303790 121303790 A G ARGFX Missense_Mutation p.T83A 0.38 tolerated(0.08) probably_damaging(0.993) TCGA-37-3792-01 3 121410397 121410397 A G GOLGB1 Missense_Mutation p.L2605S 0.10 probably_damaging(0.982) TCGA-37-3792-01 3 122629033 122629033 C A SEMA5B Missense_Mutation p.R1192L 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.851) TCGA-37-3792-01 3 124709806 124709806 T G HEG1 Missense_Mutation p.E1226A 0.36 deleterious(0.02) probably_damaging(0.968) TCGA-37-3792-01 3 125787025 125787025 C A SLC41A3 Missense_Mutation p.S13I 0.25 deleterious(0.01) benign(0.123) TCGA-37-3792-01 3 126915829 126915829 G T C3orf56 Missense_Mutation p.V101L 0.18 tolerated(0.28) benign(0.198) TCGA-37-3792-01 3 128181857 128181857 C A DNAJB8 Missense_Mutation p.G78W 0.32 deleterious(0) probably_damaging(0.967) TCGA-37-3792-01 3 130159386 130159386 T C COL6A5 Silent p.N2068N 0.23 TCGA-37-3792-01 3 13393673 13393673 C A NUP210 Silent p.L880L 0.29 TCGA-37-3792-01 3 134226011 134226011 G A CEP63 Missense_Mutation p.M35I 0.15 deleterious(0) probably_damaging(0.999) TCGA-37-3792-01 3 134339622 134339622 G A KY Silent p.R187R 0.43 TCGA-37-3792-01 3 134851787 134851787 C G EPHB1 Missense_Mutation p.A398G 0.09 deleterious(0.01) probably_damaging(0.933) TCGA-37-3792-01 3 13860699 13860699 C T WNT7A Missense_Mutation p.M264I 0.13 tolerated(0.08) benign(0.1) TCGA-37-3792-01 3 140409877 140409877 C T TRIM42 Missense_Mutation p.S643F 0.27 tolerated(0.7) benign(0.157) TCGA-37-3792-01 3 142720486 142720486 C T U2SURP Missense_Mutation p.P6S 0.14 deleterious_low_confidence(0.02) benign(0.018) TCGA-37-3792-01 3 160156527 160156527 G A TRIM59 Missense_Mutation p.L149F 0.12 tolerated(0.16) benign(0.102) TCGA-37-3792-01 3 16306300 16306300 A G DPH3 Silent p.C28C 0.16 TCGA-37-3792-01 3 167034865 167034865 A T ZBBX Silent p.A374A 0.37 TCGA-37-3792-01 3 170723740 170723740 G C SLC2A2 Missense_Mutation p.A256G 0.34 deleterious(0) probably_damaging(0.996) TCGA-37-3792-01 3 171406664 171406664 C T PLD1 Silent p.V447V 0.49 TCGA-37-3792-01 3 172642087 172642087 G C SPATA16 Missense_Mutation p.L417V 0.15 tolerated(0.61) possibly_damaging(0.567) TCGA-37-3792-01 3 180334654 180334654 G T CCDC39 Missense_Mutation p.T789K 0.15 deleterious(0) possibly_damaging(0.451) TCGA-37-3792-01 3 183995990 183995990 G C ECE2 Missense_Mutation p.Q331H 0.16 tolerated(0.09) possibly_damaging(0.528) TCGA-37-3792-01 3 184021754 184021754 G A PSMD2 Missense_Mutation p.C448Y 0.43 tolerated(0.23) probably_damaging(1) TCGA-37-3792-01 3 184090846 184090846 C G THPO Missense_Mutation p.V173L 0.51 tolerated(0.06) benign(0.047) TCGA-37-3792-01 3 18458409 18458409 C G SATB1 Missense_Mutation p.A125P 0.18 deleterious(0) probably_damaging(0.988) TCGA-37-3792-01 3 184800814 184800814 G A C3orf70 Missense_Mutation p.T245M 0.11 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-37-3792-01 3 186502219 186502219 A T EIF4A2 Splice_Site p.X10_splice 0.09 TCGA-37-3792-01 3 186954309 186954309 G A MASP1 Silent p.I450I 0.38 TCGA-37-3792-01 3 187416533 187416533 C A RTP2 Missense_Mutation p.R144L 0.21 tolerated(0.3) benign(0.36) TCGA-37-3792-01 3 190930376 190930376 C A OSTN Missense_Mutation p.L19M 0.27 tolerated(0.11) benign(0.234) TCGA-37-3792-01 3 195507935 195507935 G A MUC4 Missense_Mutation p.P3506S 0.10 benign(0.072) TCGA-37-3792-01 3 197427521 197427521 G A KIAA0226 Silent p.S408S 0.12 TCGA-37-3792-01 3 21792415 21792415 G T ZNF385D 5'UTR 0.12 TCGA-37-3792-01 3 25470199 25470199 C G RARB 5'UTR 0.17 TCGA-37-3792-01 3 3095532 3095532 T A CNTN4 Silent p.I951I 0.11 TCGA-37-3792-01 3 37476537 37476537 A T C3orf35 Missense_Mutation p.L143F 0.36 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-37-3792-01 3 38129854 38129854 C G DLEC1 Missense_Mutation p.A547G 0.17 tolerated(0.15) benign(0.017) TCGA-37-3792-01 3 38135258 38135258 C T DLEC1 Missense_Mutation p.T640M 0.14 deleterious(0) probably_damaging(0.996) TCGA-37-3792-01 3 38888499 38888499 C G SCN11A Missense_Mutation p.A1688P 0.25 deleterious(0) probably_damaging(0.999) TCGA-37-3792-01 3 39174489 39174489 G T TTC21A Intron 0.25 TCGA-37-3792-01 3 39185876 39185876 C T CSRNP1 Missense_Mutation p.A178T 0.23 tolerated(0.39) possibly_damaging(0.906) TCGA-37-3792-01 3 47045795 47045795 C T NBEAL2 Missense_Mutation p.S2037L 0.18 deleterious(0) benign(0.248) TCGA-37-3792-01 3 47890816 47890816 G A DHX30 Missense_Mutation p.G1022S 0.33 deleterious(0.01) probably_damaging(0.994) TCGA-37-3792-01 3 50327600 50327600 C A IFRD2 Splice_Site p.X194_splice 0.17 TCGA-37-3792-01 3 51697058 51697058 G T RAD54L2 Silent p.V1342V 0.25 TCGA-37-3792-01 3 52439174 52439174 C A BAP1 Silent p.R356R 0.17 TCGA-37-3792-01 3 52522493 52522493 G C NISCH Silent p.L995L 0.11 TCGA-37-3792-01 3 64580094 64580094 C A ADAMTS9 Missense_Mutation p.G1399V 0.20 deleterious(0) probably_damaging(0.999) TCGA-37-3792-01 3 73651593 73651593 G T PDZRN3 Missense_Mutation p.S277Y 0.19 tolerated(0.06) possibly_damaging(0.707) TCGA-37-3792-01 3 74347210 74347210 T C CNTN3 Missense_Mutation p.S767G 0.19 deleterious(0.02) benign(0.43) TCGA-37-3792-01 3 75476590 75476590 C A FAM86DP RNA 0.20 TCGA-37-3792-01 3 99568227 99568227 C T FILIP1L Missense_Mutation p.E765K 0.15 tolerated(0.56) benign(0.208) TCGA-37-3792-01 4 100336663 100336663 C A ADH7 Nonsense_Mutation p.G378* 0.36 TCGA-37-3792-01 4 109745134 109745134 G T COL25A1 Intron 0.47 TCGA-37-3792-01 4 115589440 115589440 G A UGT8 Silent p.V414V 0.19 TCGA-37-3792-01 4 119666199 119666199 C A SEC24D Missense_Mutation p.G575V 0.33 deleterious(0) probably_damaging(0.999) TCGA-37-3792-01 4 144457632 144457632 A T SMARCA5 Silent p.I432I 0.44 TCGA-37-3792-01 4 146064525 146064525 C A OTUD4 Missense_Mutation p.A494S 0.33 tolerated(0.19) benign(0.017) TCGA-37-3792-01 4 156721204 156721204 G T GUCY1B3 Missense_Mutation p.D385Y 0.30 deleterious(0.02) probably_damaging(0.942) TCGA-37-3792-01 4 156850808 156850808 C A CTSO Missense_Mutation p.V242L 0.40 deleterious(0.04) benign(0.213) TCGA-37-3792-01 4 15733417 15733417 G T BST1 Silent p.A302A 0.59 TCGA-37-3792-01 4 165961370 165961370 A T TRIM60 Missense_Mutation p.D49V 0.16 deleterious(0.05) benign(0.432) TCGA-37-3792-01 4 175649747 175649747 C G GLRA3 Missense_Mutation p.D124H 0.39 tolerated(0.06) benign(0.444) TCGA-37-3792-01 4 175896726 175896727 - T ADAM29 Frame_Shift_Ins p.G18Wfs*6 0.25 TCGA-37-3792-01 4 184368309 184368309 T C CDKN2AIP Missense_Mutation p.L491P 0.26 deleterious(0) benign(0.396) TCGA-37-3792-01 4 189012533 189012533 G T TRIML2 Missense_Mutation p.S386R 0.32 deleterious_low_confidence(0.04) benign(0.004) TCGA-37-3792-01 4 20487881 20487881 A G SLIT2 Missense_Mutation p.K200E 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-37-3792-01 4 24854768 24854768 C G CCDC149 Missense_Mutation p.D100H 0.33 deleterious(0) probably_damaging(0.914) TCGA-37-3792-01 4 30725755 30725755 G A PCDH7 Missense_Mutation p.C904Y 0.43 deleterious(0.03) probably_damaging(0.989) TCGA-37-3792-01 4 47676439 47676439 C G CORIN Missense_Mutation p.C443S 0.36 deleterious(0) possibly_damaging(0.573) TCGA-37-3792-01 4 5578082 5578082 C T EVC2 Missense_Mutation p.D1053N 0.22 deleterious(0.02) benign(0.178) TCGA-37-3792-01 4 57164472 57164472 C A KIAA1211 Missense_Mutation p.A26E 0.45 deleterious(0) probably_damaging(0.998) TCGA-37-3792-01 4 5844868 5844868 C T CRMP1 Silent p.E328E 0.52 TCGA-37-3792-01 4 62800642 62800642 G T LPHN3 Missense_Mutation p.A665S 0.30 tolerated(0.54) benign(0.052) TCGA-37-3792-01 4 62800643 62800643 C G LPHN3 Missense_Mutation p.A665G 0.30 deleterious(0.01) possibly_damaging(0.565) TCGA-37-3792-01 4 62800644 62800644 G C LPHN3 Silent p.A665A 0.30 TCGA-37-3792-01 4 72412076 72412076 G T SLC4A4 Missense_Mutation p.G818W 0.44 deleterious(0) probably_damaging(1) TCGA-37-3792-01 4 74279242 74279242 G T ALB Missense_Mutation p.V317L 0.36 tolerated(0.43) benign(0.002) TCGA-37-3792-01 4 74303916 74303916 G T AFP Missense_Mutation p.V55F 0.25 deleterious(0.02) benign(0.307) TCGA-37-3792-01 4 77317582 77317582 G C CCDC158 Missense_Mutation p.S43C 0.24 deleterious(0.01) benign(0.391) TCGA-37-3792-01 4 83861055 83861055 T A LIN54 Missense_Mutation p.Q410L 0.20 deleterious(0.03) possibly_damaging(0.504) TCGA-37-3792-01 4 85741310 85741310 C A WDFY3 Missense_Mutation p.D541Y 0.19 deleterious(0) benign(0.01) TCGA-37-3792-01 4 90169701 90169701 C A GPRIN3 Missense_Mutation p.A521S 0.38 tolerated(0.68) benign(0.009) TCGA-37-3792-01 4 90647793 90647793 C T SNCA Missense_Mutation p.E137K 0.28 deleterious_low_confidence(0.01) benign(0.008) TCGA-37-3792-01 4 9784238 9784238 C G DRD5 Missense_Mutation p.N195K 0.37 tolerated(0.39) benign(0.05) TCGA-37-3792-01 5 1065499 1065499 T A SLC12A7 Missense_Mutation p.Q779L 0.27 deleterious(0) probably_damaging(0.993) TCGA-37-3792-01 5 108380497 108380497 G T FER Splice_Site p.X610_splice 0.42 TCGA-37-3792-01 5 110819772 110819772 A C CAMK4 Missense_Mutation p.S344R 0.52 tolerated(0.11) benign(0.035) TCGA-37-3792-01 5 11159845 11159845 C T CTNND2 Missense_Mutation p.D668N 0.08 deleterious(0) probably_damaging(0.996) TCGA-37-3792-01 5 121309954 121309954 A G SRFBP1 Missense_Mutation p.S34G 0.42 tolerated(0.13) possibly_damaging(0.601) TCGA-37-3792-01 5 129037229 129037229 C A ADAMTS19 Missense_Mutation p.Q1029K 0.30 tolerated(0.07) benign(0.211) TCGA-37-3792-01 5 134870985 134870985 C A NEUROG1 Missense_Mutation p.E132D 0.27 deleterious(0) probably_damaging(0.988) TCGA-37-3792-01 5 135601999 135601999 G T TRPC7 Missense_Mutation p.N418K 0.47 deleterious(0.05) possibly_damaging(0.507) TCGA-37-3792-01 5 13721213 13721213 T C DNAH5 Missense_Mutation p.I4059V 0.36 benign(0.112) TCGA-37-3792-01 5 13922342 13922342 G T DNAH5 Silent p.A178A 0.43 TCGA-37-3792-01 5 140503830 140503830 C A PCDHB4 Nonsense_Mutation p.Y750* 0.45 TCGA-37-3792-01 5 140562289 140562289 T G PCDHB16 Missense_Mutation p.L52R 0.44 deleterious_low_confidence(0) probably_damaging(1) TCGA-37-3792-01 5 140594745 140594745 G C PCDHB13 Missense_Mutation p.M350I 0.41 tolerated_low_confidence(0.72) benign(0.001) TCGA-37-3792-01 5 140755177 140755177 C A PCDHGA6 Silent p.S509S 0.43 TCGA-37-3792-01 5 140774328 140774328 G T PCDHGA8 Missense_Mutation p.G650C 0.50 deleterious_low_confidence(0) probably_damaging(1) TCGA-37-3792-01 5 14291104 14291104 G T TRIO Missense_Mutation p.D274Y 0.16 possibly_damaging(0.862) TCGA-37-3792-01 5 143200186 143200186 G T HMHB1 3'UTR 0.32 TCGA-37-3792-01 5 148747611 148747611 C T PCYOX1L Silent p.D293D 0.45 TCGA-37-3792-01 5 153857205 153857205 G T HAND1 Missense_Mutation p.P122T 0.42 deleterious(0) probably_damaging(1) TCGA-37-3792-01 5 153857206 153857206 G T HAND1 Silent p.I121I 0.44 TCGA-37-3792-01 5 158595979 158595979 C A RNF145 Missense_Mutation p.L371F 0.45 deleterious(0) probably_damaging(0.999) TCGA-37-3792-01 5 15936713 15936713 G C FBXL7 Silent p.T298T 0.23 TCGA-37-3792-01 5 16091048 16091048 A T MARCH11 Missense_Mutation p.L279H 0.18 deleterious(0) probably_damaging(0.999) TCGA-37-3792-01 5 167617445 167617445 G T TENM2 Missense_Mutation p.Q891H 0.51 deleterious(0.03) probably_damaging(0.971) TCGA-37-3792-01 5 169145793 169145793 A T DOCK2 Silent p.S755S 0.39 TCGA-37-3792-01 5 170819929 170819929 A G NPM1 Silent p.K157K 0.60 TCGA-37-3792-01 5 174919150 174919150 G T SFXN1 Missense_Mutation p.R15L 0.47 tolerated(0.16) benign(0.035) TCGA-37-3792-01 5 175523885 175523885 G T FAM153B Silent p.T64T 0.28 TCGA-37-3792-01 5 176008481 176008481 C T CDHR2 Silent p.A652A 0.40 TCGA-37-3792-01 5 180668580 180668580 G A GNB2L1 Missense_Mutation p.S114F 0.31 deleterious(0) probably_damaging(0.999) TCGA-37-3792-01 5 21755842 21755842 G T CDH12 Missense_Mutation p.S581R 0.41 deleterious(0.01) probably_damaging(1) TCGA-37-3792-01 5 21755843 21755843 C G CDH12 Missense_Mutation p.S581T 0.43 deleterious(0.01) probably_damaging(1) TCGA-37-3792-01 5 24509840 24509840 G T CDH10 Missense_Mutation p.P364Q 0.57 deleterious(0.03) probably_damaging(0.994) TCGA-37-3792-01 5 32000304 32000304 G T PDZD2 Missense_Mutation p.G394V 0.30 deleterious(0) possibly_damaging(0.809) TCGA-37-3792-01 5 33576538 33576538 G T ADAMTS12 Missense_Mutation p.P1198H 0.23 tolerated(0.05) possibly_damaging(0.789) TCGA-37-3792-01 5 37183231 37183231 T G C5orf42 Silent p.S1684S 0.28 TCGA-37-3792-01 5 37294530 37294530 A G NUP155 Silent p.T1277T 0.12 TCGA-37-3792-01 5 39202459 39202459 G T FYB Missense_Mutation p.P212T 0.39 deleterious(0.01) possibly_damaging(0.743) TCGA-37-3792-01 5 39202464 39202464 T A FYB Missense_Mutation p.Q210L 0.37 deleterious(0.05) possibly_damaging(0.556) TCGA-37-3792-01 5 40852635 40852635 T G CARD6 Missense_Mutation p.C401G 0.33 deleterious(0) probably_damaging(0.998) TCGA-37-3792-01 5 40909662 40909662 C T C7 5'UTR 0.16 TCGA-37-3792-01 5 41195941 41195941 G A C6 Silent p.C180C 0.22 TCGA-37-3792-01 5 41382257 41382257 C A PLCXD3 Missense_Mutation p.M161I 0.25 tolerated(0.26) benign(0.173) TCGA-37-3792-01 5 465270 465270 G T EXOC3 Silent p.L607L 0.33 TCGA-37-3792-01 5 50679517 50679517 G - ISL1 Frame_Shift_Del p.G5Efs*9 0.36 TCGA-37-3792-01 5 5242178 5242178 G T ADAMTS16 Nonsense_Mutation p.G846* 0.12 TCGA-37-3792-01 5 5464465 5464465 G T KIAA0947 Missense_Mutation p.R1673L 0.48 tolerated(0.14) benign(0.06) TCGA-37-3792-01 5 55406996 55406996 G T ANKRD55 Missense_Mutation p.Q527K 0.49 tolerated_low_confidence(0.51) benign(0.2) TCGA-37-3792-01 5 56176569 56176569 T A MAP3K1 Missense_Mutation p.L707M 0.54 tolerated(0.1) possibly_damaging(0.649) TCGA-37-3792-01 5 6746499 6746499 A T PAPD7 Missense_Mutation p.Y223F 0.43 tolerated(0.09) benign(0.206) TCGA-37-3792-01 5 71519589 71519589 C A MRPS27 Missense_Mutation p.G309V 0.44 tolerated(0.26) benign(0.016) TCGA-37-3792-01 5 82940305 82940305 G T HAPLN1 Missense_Mutation p.P218T 0.45 deleterious(0) probably_damaging(1) TCGA-37-3792-01 5 86658489 86658489 G T RASA1 Splice_Site p.X485_splice 0.60 TCGA-37-3792-01 5 9063218 9063218 C A SEMA5A Splice_Site p.X767_splice 0.17 TCGA-37-3792-01 5 99871160 99871160 G C FAM174A 5'UTR 0.23 TCGA-37-3792-01 6 10398689 10398689 G A TFAP2A Silent p.N425N 0.15 TCGA-37-3792-01 6 105219121 105219121 C A HACE1 Nonsense_Mutation p.E720* 0.17 TCGA-37-3792-01 6 111697709 111697709 A G REV3L Missense_Mutation p.F617L 0.14 tolerated(0.73) benign(0.001) TCGA-37-3792-01 6 116758420 116758420 A T DSE Missense_Mutation p.H930L 0.12 deleterious_low_confidence(0) benign(0.053) TCGA-37-3792-01 6 117127557 117127557 G T GPRC6A Missense_Mutation p.N437K 0.17 tolerated(0.27) benign(0.005) TCGA-37-3792-01 6 128505757 128505757 C A PTPRK Missense_Mutation p.V328L 0.18 tolerated(0.13) possibly_damaging(0.863) TCGA-37-3792-01 6 129777641 129777641 T G LAMA2 Splice_Site p.X2289_splice 0.29 TCGA-37-3792-01 6 129785576 129785576 G A LAMA2 Missense_Mutation p.M2378I 0.19 deleterious(0.01) benign(0.345) TCGA-37-3792-01 6 132967134 132967134 G T TAAR1 Silent p.P3P 0.24 TCGA-37-3792-01 6 133044166 133044166 G A VNN3 3'UTR 0.13 TCGA-37-3792-01 6 133072470 133072470 C A VNN2 Missense_Mutation p.R338S 0.20 tolerated(0.9) benign(0.001) TCGA-37-3792-01 6 135264991 135264991 C A ALDH8A1 Silent p.L84L 0.20 TCGA-37-3792-01 6 139563811 139563811 G T TXLNB Missense_Mutation p.A636E 0.17 tolerated_low_confidence(0.74) benign(0.008) TCGA-37-3792-01 6 146720233 146720233 G T GRM1 Silent p.L686L 0.24 TCGA-37-3792-01 6 151773706 151773706 C T C6orf211 Missense_Mutation p.S9L 0.12 deleterious(0) benign(0.126) TCGA-37-3792-01 6 152787127 152787127 T A SYNE1 Silent p.A573A 0.31 TCGA-37-3792-01 6 155469354 155469354 C T TIAM2 Silent p.N638N 0.23 TCGA-37-3792-01 6 155757591 155757591 G T NOX3 Silent p.A253A 0.33 TCGA-37-3792-01 6 167570421 167570421 A T GPR31 Missense_Mutation p.L300H 0.22 deleterious(0) benign(0.067) TCGA-37-3792-01 6 168352032 168352032 C T MLLT4 Missense_Mutation p.S1326F 0.12 deleterious_low_confidence(0) possibly_damaging(0.789) TCGA-37-3792-01 6 17292384 17292384 C A RBM24 3'UTR 0.16 TCGA-37-3792-01 6 25819372 25819372 C A SLC17A1 Silent p.L180L 0.24 TCGA-37-3792-01 6 26184224 26184224 C T HIST1H2BE Silent p.V67V 0.16 TCGA-37-3792-01 6 27879573 27879573 A C OR2B2 Missense_Mutation p.D175E 0.23 deleterious(0.04) benign(0.163) TCGA-37-3792-01 6 30457269 30457269 T A HLA-E 5'UTR 0.17 TCGA-37-3792-01 6 30593566 30593566 G T MRPS18B Missense_Mutation p.A257S 0.37 deleterious_low_confidence(0.01) benign(0.345) TCGA-37-3792-01 6 31504356 31504356 C A DDX39B Silent p.L179L 0.23 TCGA-37-3792-01 6 31678165 31678165 T G LY6G6F Missense_Mutation p.V280G 0.15 deleterious(0) possibly_damaging(0.713) TCGA-37-3792-01 6 32020750 32020750 C T TNXB Missense_Mutation p.A2936T 0.10 benign(0.001) TCGA-37-3792-01 6 32487370 32487370 G A HLA-DRB5 Silent p.L143L 0.34 TCGA-37-3792-01 6 34100925 34100925 C A GRM4 Nonsense_Mutation p.E117* 0.41 TCGA-37-3792-01 6 36270156 36270156 G T PNPLA1 Missense_Mutation p.V432L 0.15 tolerated_low_confidence(0.11) benign(0.08) TCGA-37-3792-01 6 36290133 36290133 G T C6orf222 Missense_Mutation p.H520N 0.42 tolerated(0.12) possibly_damaging(0.607) TCGA-37-3792-01 6 36716031 36716031 A G CPNE5 Missense_Mutation p.F329L 0.13 deleterious(0.02) possibly_damaging(0.817) TCGA-37-3792-01 6 37438822 37438822 C A CMTR1 Missense_Mutation p.L511M 0.33 deleterious(0) probably_damaging(1) TCGA-37-3792-01 6 38750807 38750807 G T DNAH8 Missense_Mutation p.D546Y 0.16 possibly_damaging(0.641) TCGA-37-3792-01 6 41129052 41129052 G A TREM2 Missense_Mutation p.H114Y 0.35 tolerated(1) benign(0.01) TCGA-37-3792-01 6 42891993 42891993 C G PTCRA Missense_Mutation p.P136A 0.22 tolerated(0.51) benign(0.201) TCGA-37-3792-01 6 43306552 43306552 A C ZNF318 Silent p.G1728G 0.17 TCGA-37-3792-01 6 43307207 43307207 G A ZNF318 Missense_Mutation p.P1510L 0.15 possibly_damaging(0.72) TCGA-37-3792-01 6 44254120 44254120 G T TCTE1 Missense_Mutation p.H143N 0.40 tolerated(0.09) benign(0.044) TCGA-37-3792-01 6 47847444 47847444 T A PTCHD4 Missense_Mutation p.Y379F 0.13 deleterious(0) probably_damaging(0.982) TCGA-37-3792-01 6 5000807 5000807 C G RPP40 Silent p.L109L 0.25 TCGA-37-3792-01 6 50696669 50696669 G T TFAP2D Missense_Mutation p.E233D 0.27 deleterious(0) probably_damaging(0.998) TCGA-37-3792-01 6 52268224 52268224 G A PAQR8 Silent p.Q71Q 0.20 TCGA-37-3792-01 6 55192311 55192311 A G GFRAL 5'UTR 0.17 TCGA-37-3792-01 6 55300456 55300456 C G HMGCLL1 3'UTR 0.11 TCGA-37-3792-01 6 5545450 5545450 A T FARS2 Silent p.L314L 0.13 TCGA-37-3792-01 6 56434651 56434651 C A DST Intron 0.13 TCGA-37-3792-01 6 66094347 66094347 G T EYS Missense_Mutation p.H411N 0.20 tolerated(0.31) benign(0.015) TCGA-37-3792-01 6 72011119 72011119 T C OGFRL1 Silent p.R241R 0.25 TCGA-37-3792-01 6 7581122 7581122 C T DSP Nonsense_Mutation p.Q1567* 0.17 TCGA-37-3792-01 6 75825499 75825499 C T COL12A1 Splice_Site p.X2566_splice 0.17 TCGA-37-3792-01 6 75838142 75838142 C T COL12A1 Splice_Site p.X2071_splice 0.21 TCGA-37-3792-01 6 86227539 86227539 G A SNX14 Missense_Mutation p.P735S 0.27 tolerated(0.16) benign(0.04) TCGA-37-3792-01 6 86243388 86243388 G A SNX14 Missense_Mutation p.S580F 0.25 tolerated(0.71) benign(0.004) TCGA-37-3792-01 6 88853967 88853967 T A CNR1 Nonsense_Mutation p.K343* 0.21 TCGA-37-3792-01 6 94120414 94120414 C T EPHA7 Missense_Mutation p.A213T 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-37-3792-01 7 100349615 100349615 C A ZAN Silent p.L629L 0.21 TCGA-37-3792-01 7 100803849 100803849 C T AP1S1 3'UTR 0.19 TCGA-37-3792-01 7 100859800 100859800 C T PLOD3 Missense_Mutation p.G77R 0.23 deleterious(0) probably_damaging(0.995) TCGA-37-3792-01 7 103368605 103368605 G A RELN Missense_Mutation p.H236Y 0.19 tolerated(0.15) benign(0.039) TCGA-37-3792-01 7 104747643 104747643 A T KMT2E Missense_Mutation p.I960L 0.10 tolerated_low_confidence(0.17) benign(0.031) TCGA-37-3792-01 7 105636781 105636781 G T CDHR3 Nonsense_Mutation p.E232* 0.37 TCGA-37-3792-01 7 107621081 107621081 A T LAMB1 Missense_Mutation p.D284E 0.14 tolerated(0.88) benign(0.007) TCGA-37-3792-01 7 11021997 11021997 A T PHF14 Splice_Site p.X38_splice 0.34 TCGA-37-3792-01 7 114329937 114329937 G A FOXP2 Missense_Mutation p.D727N 0.24 deleterious(0.04) benign(0.008) TCGA-37-3792-01 7 126173230 126173230 C A GRM8 Missense_Mutation p.A736S 0.28 tolerated(0.32) probably_damaging(0.999) TCGA-37-3792-01 7 127253504 127253504 C A PAX4 Missense_Mutation p.R207S 0.27 deleterious(0) possibly_damaging(0.625) TCGA-37-3792-01 7 134927550 134927550 G A STRA8 Silent p.K92K 0.21 TCGA-37-3792-01 7 136588030 136588030 C A CHRM2 Intron 0.16 TCGA-37-3792-01 7 141537711 141537711 G T PRSS37 Missense_Mutation p.P127T 0.10 tolerated(0.39) benign(0.029) TCGA-37-3792-01 7 142021204 142021204 C A TRBV5-1 Missense_Mutation p.L62I 0.20 tolerated(0.27) benign(0.101) TCGA-37-3792-01 7 14217734 14217734 G T DGKB Missense_Mutation p.A723D 0.24 deleterious(0) probably_damaging(0.98) TCGA-37-3792-01 7 142562421 142562421 G T EPHB6 Missense_Mutation p.G288V 0.24 deleterious(0.01) possibly_damaging(0.694) TCGA-37-3792-01 7 142880861 142880861 T A TAS2R39 Missense_Mutation p.F117Y 0.19 tolerated(0.12) benign(0.058) TCGA-37-3792-01 7 143632932 143632932 A T OR2F2 Missense_Mutation p.S203C 0.27 deleterious(0.03) probably_damaging(0.99) TCGA-37-3792-01 7 143747860 143747860 G T OR2A5 Silent p.R122R 0.17 TCGA-37-3792-01 7 143793085 143793085 G T OR2A12 Missense_Mutation p.E295D 0.20 tolerated(0.26) benign(0.043) TCGA-37-3792-01 7 148876653 148876653 G A ZNF398 Silent p.G563G 0.25 TCGA-37-3792-01 7 149493807 149493807 G C SSPO RNA 0.38 TCGA-37-3792-01 7 149509019 149509019 T A SSPO RNA 0.22 TCGA-37-3792-01 7 150720275 150720275 G A ATG9B Silent p.V226V 0.21 TCGA-37-3792-01 7 151135246 151135246 T C CRYGN Missense_Mutation p.M36V 0.27 tolerated(0.24) benign(0.241) TCGA-37-3792-01 7 151860513 151860513 T C KMT2C Silent p.V3383V 0.12 TCGA-37-3792-01 7 15430353 15430353 T A AGMO Missense_Mutation p.E255D 0.14 tolerated(0.31) benign(0.008) TCGA-37-3792-01 7 20403333 20403333 G A ITGB8 Nonsense_Mutation p.W67* 0.43 TCGA-37-3792-01 7 2629570 2629570 A T IQCE Silent p.S358S 0.13 TCGA-37-3792-01 7 27182781 27182781 G T HOXA5 Missense_Mutation p.A149D 0.46 tolerated(0.54) benign(0.055) TCGA-37-3792-01 7 33407408 33407408 G C BBS9 Missense_Mutation p.V575L 0.44 tolerated(0.4) possibly_damaging(0.561) TCGA-37-3792-01 7 34097730 34097730 G T BMPER Silent p.T329T 0.16 TCGA-37-3792-01 7 36194434 36194434 G C EEPD1 Missense_Mutation p.E167D 0.16 tolerated(0.17) benign(0.03) TCGA-37-3792-01 7 36934469 36934469 G T ELMO1 Missense_Mutation p.R531S 0.37 tolerated(0.57) benign(0.081) TCGA-37-3792-01 7 37780074 37780074 G A GPR141 Missense_Mutation p.V27M 0.11 deleterious(0.01) probably_damaging(0.982) TCGA-37-3792-01 7 42950465 42950465 G A C7orf25 Missense_Mutation p.A70V 0.41 tolerated(0.35) benign(0.004) TCGA-37-3792-01 7 45743041 45743041 C T ADCY1 Silent p.L841L 0.45 TCGA-37-3792-01 7 48391963 48391963 G T ABCA13 Missense_Mutation p.V3523F 0.15 benign(0.332) TCGA-37-3792-01 7 53103807 53103807 A G POM121L12 Missense_Mutation p.E148G 0.31 tolerated(0.63) possibly_damaging(0.859) TCGA-37-3792-01 7 5568863 5568863 G A ACTB Missense_Mutation p.P98S 0.13 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-37-3792-01 7 57188581 57188581 C G ZNF479 Missense_Mutation p.G181R 0.12 tolerated(0.12) benign(0.1) TCGA-37-3792-01 7 64526793 64526793 G A SNORA22 3'Flank 0.28 TCGA-37-3792-01 7 66264318 66264318 G T KCTD7 Missense_Mutation p.R246L 0.19 deleterious(0.01) benign(0.023) TCGA-37-3792-01 7 72267429 72267429 C A TYW1B Missense_Mutation p.V278L 0.18 tolerated(0.07) benign(0.004) TCGA-37-3792-01 7 72903593 72903593 T C BAZ1B Silent p.V274V 0.24 TCGA-37-3792-01 7 73466116 73466116 G T ELN Missense_Mutation p.G279V 0.27 unknown(0) TCGA-37-3792-01 7 7636005 7636005 G A MIOS Missense_Mutation p.V772I 0.28 tolerated(0.39) benign(0.015) TCGA-37-3792-01 7 76828593 76828593 A C FGL2 Missense_Mutation p.V173G 0.23 deleterious(0) benign(0.244) TCGA-37-3792-01 7 82583264 82583264 T A PCLO Missense_Mutation p.L2335F 0.19 unknown(0) TCGA-37-3792-01 7 90547039 90547039 G T CDK14 Missense_Mutation p.G258C 0.22 deleterious(0) probably_damaging(1) TCGA-37-3792-01 7 99315157 99315157 G A CYP3A7 Missense_Mutation p.L142F 0.22 deleterious(0.03) possibly_damaging(0.791) TCGA-37-3792-01 7 99757744 99757744 C G GAL3ST4 Missense_Mutation p.R423P 0.19 tolerated(0.15) possibly_damaging(0.516) TCGA-37-3792-01 8 10102637 10102637 G A MSRA Missense_Mutation p.E79K 0.14 deleterious(0) probably_damaging(1) TCGA-37-3792-01 8 101733623 101733623 C A PABPC1 Silent p.A63A 0.17 TCGA-37-3792-01 8 104897708 104897708 G T RIMS2 Missense_Mutation p.R294M 0.22 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-37-3792-01 8 105367251 105367251 G C DCSTAMP Silent p.L392L 0.15 TCGA-37-3792-01 8 110487376 110487376 C A PKHD1L1 Silent p.R2879R 0.19 TCGA-37-3792-01 8 110980770 110980770 G T KCNV1 Silent p.L350L 0.09 TCGA-37-3792-01 8 113246670 113246670 C A CSMD3 Missense_Mutation p.R3555L 0.16 tolerated(0.34) benign(0.002) TCGA-37-3792-01 8 113249565 113249565 A T CSMD3 Missense_Mutation p.V3494E 0.17 deleterious(0) possibly_damaging(0.552) TCGA-37-3792-01 8 113504881 113504881 G A CSMD3 Silent p.G1705G 0.23 TCGA-37-3792-01 8 113564867 113564867 C A CSMD3 Silent p.L1439L 0.14 TCGA-37-3792-01 8 116430588 116430588 G T TRPS1 Missense_Mutation p.N931K 0.18 deleterious(0.03) probably_damaging(0.998) TCGA-37-3792-01 8 128428719 128428719 T C POU5F1B Missense_Mutation p.L203S 0.21 deleterious(0) probably_damaging(0.997) TCGA-37-3792-01 8 12956973 12956973 C T DLC1 Missense_Mutation p.R958Q 0.19 tolerated(0.19) possibly_damaging(0.815) TCGA-37-3792-01 8 133142025 133142025 C A KCNQ3 Missense_Mutation p.Q701H 0.17 tolerated(0.07) benign(0.025) TCGA-37-3792-01 8 13357367 13357367 C G DLC1 Missense_Mutation p.D72H 0.16 deleterious_low_confidence(0.04) benign(0.418) TCGA-37-3792-01 8 134145794 134145794 G C TG Missense_Mutation p.G2693A 0.28 tolerated(0.17) benign(0.063) TCGA-37-3792-01 8 139144816 139144816 G T FAM135B 3'UTR 0.15 TCGA-37-3792-01 8 141678401 141678401 T A PTK2 Silent p.P957P 0.25 TCGA-37-3792-01 8 142446011 142446011 A T PTP4A3 3'Flank 0.14 TCGA-37-3792-01 8 143425564 143425564 C T TSNARE1 Missense_Mutation p.A170T 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.903) TCGA-37-3792-01 8 143425565 143425565 C G TSNARE1 Missense_Mutation p.Q169H 0.22 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-37-3792-01 8 21984836 21984836 G - HR Frame_Shift_Del p.S374Afs*6 0.23 TCGA-37-3792-01 8 25337514 25337514 C G CDCA2 Missense_Mutation p.D302E 0.18 tolerated(0.37) benign(0.141) TCGA-37-3792-01 8 25715965 25715965 C G EBF2 Silent p.T466T 0.18 TCGA-37-3792-01 8 26627643 26627643 C A ADRA1A Intron 0.20 TCGA-37-3792-01 8 28206278 28206278 C A ZNF395 Silent p.T500T 0.32 TCGA-37-3792-01 8 28671130 28671130 C A INTS9 Splice_Site p.X163_splice 0.22 TCGA-37-3792-01 8 2886887 2886887 C A CSMD1 Missense_Mutation p.Q2603H 0.21 benign(0.003) TCGA-37-3792-01 8 30210430 30210430 T A TUBBP1 RNA 0.15 TCGA-37-3792-01 8 32621457 32621457 G T NRG1 Missense_Mutation p.R492L 0.17 tolerated(0.09) probably_damaging(0.954) TCGA-37-3792-01 8 33310894 33310894 C - FUT10 Frame_Shift_Del p.R74Efs*17 0.19 TCGA-37-3792-01 8 35542112 35542112 G C UNC5D Missense_Mutation p.W255S 0.21 deleterious(0) possibly_damaging(0.696) TCGA-37-3792-01 8 39564405 39564405 G A ADAM18 Missense_Mutation p.G667R 0.25 deleterious(0) probably_damaging(0.999) TCGA-37-3792-01 8 39607188 39607188 C A ADAM2 Missense_Mutation p.G625C 0.12 deleterious(0) probably_damaging(0.999) TCGA-37-3792-01 8 49987887 49987887 C A C8orf22 3'UTR 0.29 TCGA-37-3792-01 8 54142078 54142078 C G OPRK1 Missense_Mutation p.A308P 0.19 tolerated(0.1) probably_damaging(0.915) TCGA-37-3792-01 8 54142391 54142391 T C OPRK1 Splice_Site p.X204_splice 0.18 TCGA-37-3792-01 8 63492168 63492168 T C NKAIN3 Missense_Mutation p.L42P 0.26 deleterious(0) probably_damaging(0.992) TCGA-37-3792-01 8 64098927 64098927 G T YTHDF3 Missense_Mutation p.G119C 0.24 tolerated(0.07) possibly_damaging(0.831) TCGA-37-3792-01 8 66963899 66963899 C A DNAJC5B Nonsense_Mutation p.Y39* 0.19 TCGA-37-3792-01 8 67576657 67576658 - T VCPIP1 Frame_Shift_Ins p.I846Nfs*9 0.24 TCGA-37-3792-01 8 68208800 68208801 - T ARFGEF1 Frame_Shift_Ins p.G169Rfs*74 0.19 TCGA-37-3792-01 8 70540451 70540451 G C SULF1 Missense_Mutation p.K696N 0.12 tolerated(0.45) benign(0.039) TCGA-37-3792-01 8 72963104 72963104 C T TRPA1 Nonsense_Mutation p.W605* 0.19 TCGA-37-3792-01 8 75157346 75157346 C G JPH1 Missense_Mutation p.K441N 0.16 tolerated(0.44) possibly_damaging(0.536) TCGA-37-3792-01 8 75737734 75737734 C A PI15 Missense_Mutation p.P84T 0.22 tolerated(0.12) probably_damaging(0.999) TCGA-37-3792-01 8 81888785 81888785 C G PAG1 Missense_Mutation p.R431S 0.25 deleterious(0) probably_damaging(0.998) TCGA-37-3792-01 8 87242475 87242475 C G SLC7A13 Missense_Mutation p.R11T 0.08 deleterious(0) possibly_damaging(0.887) TCGA-37-3792-01 8 89130994 89130994 T A MMP16 Missense_Mutation p.Q269L 0.15 deleterious(0) probably_damaging(0.998) TCGA-37-3792-01 8 90937417 90937417 G C OSGIN2 Missense_Mutation p.C436S 0.22 deleterious(0) probably_damaging(0.944) TCGA-37-3792-01 9 100862225 100862225 G A TRIM14 Silent p.V175V 0.20 TCGA-37-3792-01 9 103204367 103204367 G A MSANTD3 Nonsense_Mutation p.W49* 0.14 TCGA-37-3792-01 9 1056567 1056567 G T DMRT2 Missense_Mutation p.S327I 0.38 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-37-3792-01 9 107528734 107528734 G T NIPSNAP3B Silent p.R63R 0.54 TCGA-37-3792-01 9 108424912 108424912 C T TAL2 Silent p.R45R 0.33 TCGA-37-3792-01 9 113308445 113308445 C A SVEP1 Missense_Mutation p.C305F 0.49 probably_damaging(0.999) TCGA-37-3792-01 9 113547851 113547851 T C MUSK Missense_Mutation p.L544S 0.53 deleterious(0.01) possibly_damaging(0.864) TCGA-37-3792-01 9 115652918 115652918 C T SLC46A2 Missense_Mutation p.R15H 0.62 tolerated_low_confidence(0.09) benign(0.002) TCGA-37-3792-01 9 128104551 128104551 G T GAPVD1 Missense_Mutation p.G1034W 0.40 tolerated(0.18) possibly_damaging(0.671) TCGA-37-3792-01 9 131597905 131597905 G A CCBL1 Silent p.F299F 0.50 TCGA-37-3792-01 9 13192153 13192153 A G MPDZ Missense_Mutation p.C649R 0.21 tolerated(0.52) benign(0.001) TCGA-37-3792-01 9 132584943 132584943 C A TOR1A Nonsense_Mutation p.E121* 0.55 TCGA-37-3792-01 9 132963262 132963262 G A NCS1 Splice_Site p.X30_splice 0.14 TCGA-37-3792-01 9 137778304 137778304 G A FCN2 Silent p.V196V 0.43 TCGA-37-3792-01 9 140127504 140127504 G C SLC34A3 Missense_Mutation p.G166A 0.45 deleterious(0.02) possibly_damaging(0.828) TCGA-37-3792-01 9 16435824 16435824 G T BNC2 Missense_Mutation p.Q790K 0.21 tolerated(0.11) benign(0.078) TCGA-37-3792-01 9 18533256 18533256 G T ADAMTSL1 Missense_Mutation p.G68V 0.13 deleterious(0) probably_damaging(1) TCGA-37-3792-01 9 19450664 19450664 A T ACER2 3'UTR 0.19 TCGA-37-3792-01 9 19520961 19520961 G A SLC24A2 Missense_Mutation p.A556V 0.25 deleterious(0) probably_damaging(0.966) TCGA-37-3792-01 9 20778680 20778680 G A FOCAD Missense_Mutation p.D303N 0.32 tolerated(0.28) benign(0.003) TCGA-37-3792-01 9 20778681 20778681 A T FOCAD Missense_Mutation p.D303V 0.32 tolerated(0.2) benign(0.002) TCGA-37-3792-01 9 21304950 21304950 C T IFNA5 Silent p.E102E 0.06 TCGA-37-3792-01 9 32635450 32635450 C A TAF1L Missense_Mutation p.G43V 0.14 deleterious(0) probably_damaging(1) TCGA-37-3792-01 9 33675805 33675805 C - PTENP1 RNA 0.23 TCGA-37-3792-01 9 34506707 34506707 C G DNAI1 Missense_Mutation p.S382R 0.43 deleterious(0) benign(0.129) TCGA-37-3792-01 9 34552824 34552824 G T CNTFR Missense_Mutation p.T266N 0.27 deleterious(0.04) benign(0.175) TCGA-37-3792-01 9 34659774 34659774 G T IL11RA Nonsense_Mutation p.E277* 0.19 TCGA-37-3792-01 9 35699974 35699974 C A TLN1 Silent p.L2255L 0.45 TCGA-37-3792-01 9 37541599 37541599 C A FBXO10 Missense_Mutation p.R56L 0.50 deleterious(0) possibly_damaging(0.829) TCGA-37-3792-01 9 37919872 37919872 G A SHB Silent p.I492I 0.10 TCGA-37-3792-01 9 39118179 39118179 G C CNTNAP3 Missense_Mutation p.Q720E 0.10 deleterious(0.02) benign(0.146) TCGA-37-3792-01 9 5081831 5081831 A G JAK2 Silent p.R847R 0.30 TCGA-37-3792-01 9 73236168 73236168 C G TRPM3 Missense_Mutation p.G599R 0.54 deleterious(0.04) probably_damaging(0.909) TCGA-37-3792-01 9 78911708 78911708 G T PCSK5 Missense_Mutation p.Q1150H 0.44 tolerated(0.13) benign(0.005) TCGA-37-3792-01 9 78911709 78911709 G T PCSK5 Nonsense_Mutation p.E1151* 0.44 TCGA-37-3792-01 9 8524975 8524975 G T PTPRD Missense_Mutation p.T210N 0.38 tolerated(0.07) probably_damaging(0.996) TCGA-37-3792-01 9 85622351 85622351 C A RASEF Splice_Site p.X343_splice 0.46 TCGA-37-3792-01 9 86300979 86300979 A C UBQLN1 Missense_Mutation p.L91W 0.48 deleterious(0) probably_damaging(1) TCGA-37-3792-01 9 88961253 88961253 C T ZCCHC6 Silent p.E221E 0.46 TCGA-37-3792-01 9 99797849 99797849 T C CTSV Missense_Mutation p.M250V 0.26 tolerated(0.17) benign(0.001) TCGA-37-3792-01 X 102318110 102318110 C A BEX1 Silent p.G31G 0.39 TCGA-37-3792-01 X 110491167 110491167 T G CAPN6 Missense_Mutation p.Y513S 0.39 tolerated(0.11) possibly_damaging(0.86) TCGA-37-3792-01 X 111903892 111903892 C A LHFPL1 Missense_Mutation p.M148I 0.25 deleterious(0.01) benign(0.103) TCGA-37-3792-01 X 111903894 111903894 T A LHFPL1 Missense_Mutation p.M148L 0.26 tolerated(0.11) benign(0.004) TCGA-37-3792-01 X 11272753 11272753 C T ARHGAP6 Silent p.E221E 0.39 TCGA-37-3792-01 X 114398276 114398276 T C LRCH2 Missense_Mutation p.I476V 0.38 tolerated(0.5) benign(0.014) TCGA-37-3792-01 X 117815692 117815692 C G DOCK11 Missense_Mutation p.F1966L 0.38 deleterious(0) probably_damaging(0.997) TCGA-37-3792-01 X 117819659 117819659 A G DOCK11 Silent p.Q2037Q 0.42 TCGA-37-3792-01 X 122537264 122537264 C A GRIA3 Missense_Mutation p.A396D 0.34 deleterious(0.05) benign(0.002) TCGA-37-3792-01 X 12516864 12516864 C A FRMPD4 Missense_Mutation p.P36H 0.39 deleterious(0.04) possibly_damaging(0.678) TCGA-37-3792-01 X 12627961 12627961 G - FRMPD4 Frame_Shift_Del p.G94Afs*11 0.33 TCGA-37-3792-01 X 129148466 129148466 G A BCORL1 Missense_Mutation p.G573E 0.63 possibly_damaging(0.649) TCGA-37-3792-01 X 130415694 130415694 G C IGSF1 Missense_Mutation p.H491D 0.53 tolerated(0.12) benign(0.088) TCGA-37-3792-01 X 130420624 130420624 C G IGSF1 Missense_Mutation p.G9R 0.51 tolerated_low_confidence(0.1) benign(0.005) TCGA-37-3792-01 X 131212272 131212272 C T FRMD7 Silent p.Q591Q 0.34 TCGA-37-3792-01 X 142795582 142795582 G C SPANXN2 Missense_Mutation p.N32K 0.73 tolerated_low_confidence(0.24) possibly_damaging(0.634) TCGA-37-3792-01 X 148037574 148037574 C T AFF2 Missense_Mutation p.P667S 0.66 deleterious(0.05) probably_damaging(0.999) TCGA-37-3792-01 X 150908161 150908161 G C CNGA2 Missense_Mutation p.G111R 0.83 tolerated(0.09) benign(0.391) TCGA-37-3792-01 X 151899937 151899937 G A MAGEA12 Silent p.H288H 0.61 TCGA-37-3792-01 X 153541064 153541064 T A TKTL1 Silent p.P268P 0.70 TCGA-37-3792-01 X 17744246 17744246 C A NHS Missense_Mutation p.H653N 0.43 tolerated(0.92) benign(0.003) TCGA-37-3792-01 X 21900719 21900719 T C MBTPS2 Silent p.S502S 0.44 TCGA-37-3792-01 X 23019388 23019388 T A DDX53 Missense_Mutation p.M405K 0.35 deleterious(0) probably_damaging(1) TCGA-37-3792-01 X 23412277 23412277 T A PTCHD1 Missense_Mutation p.V881E 0.31 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-37-3792-01 X 26212900 26212900 C A MAGEB6 Missense_Mutation p.L313M 0.42 tolerated(0.73) benign(0.011) TCGA-37-3792-01 X 26212972 26212972 G A MAGEB6 Missense_Mutation p.V337M 0.39 deleterious(0) probably_damaging(0.997) TCGA-37-3792-01 X 27766317 27766317 A G DCAF8L2 Silent p.T435T 0.50 TCGA-37-3792-01 X 41089811 41089811 C T USP9X Missense_Mutation p.P2513S 0.34 tolerated_low_confidence(0.18) benign(0.001) TCGA-37-3792-01 X 41555027 41555027 C A GPR34 Silent p.P47P 0.41 TCGA-37-3792-01 X 41555028 41555028 A T GPR34 Missense_Mutation p.M48L 0.37 tolerated(0.73) benign(0.004) TCGA-37-3792-01 X 45010952 45010952 C A CXorf36 Missense_Mutation p.C416F 0.33 deleterious(0) probably_damaging(1) TCGA-37-3792-01 X 50053668 50053668 G A CCNB3 Silent p.L833L 0.35 TCGA-37-3792-01 X 55172647 55172647 G A FAM104B Missense_Mutation p.P74L 0.35 tolerated(0.71) probably_damaging(0.998) TCGA-37-3792-01 X 67331698 67331698 G C OPHN1 Silent p.V508V 0.67 TCGA-37-3792-01 X 68381825 68381825 G C PJA1 Silent p.P419P 0.57 TCGA-37-3792-01 X 71425879 71425879 G T ERCC6L Missense_Mutation p.S913Y 0.43 tolerated(0.1) possibly_damaging(0.59) TCGA-37-3792-01 X 73963083 73963083 C A KIAA2022 Missense_Mutation p.G437W 0.35 deleterious(0) probably_damaging(0.997) TCGA-37-3792-01 X 75649823 75649823 G T MAGEE1 Missense_Mutation p.Q500H 0.29 tolerated(0.08) probably_damaging(0.957) TCGA-37-3792-01 X 90691327 90691327 G T PABPC5 Missense_Mutation p.A251S 0.37 tolerated(0.25) possibly_damaging(0.679) TCGA-37-3792-01 X 9711622 9711622 C A GPR143 Missense_Mutation p.M250I 0.32 deleterious(0.04) probably_damaging(0.988) TCGA-37-3792-01 X 99849324 99849324 C A TNMD Missense_Mutation p.P130T 0.56 deleterious(0) probably_damaging(0.999) TCGA-37-3792-01 X 99944943 99944943 A G SYTL4 Silent p.S274S 0.42 TCGA-37-4129-01 17 16365626 16365626 G - FAM211A Frame_Shift_Del p.I108Sfs*33 0.09 TCGA-37-4129-01 17 27946687 27946687 T C CORO6 Silent p.S101S 0.11 TCGA-37-4129-01 17 48545502 48545502 T C CHAD Missense_Mutation p.K225E 0.09 deleterious(0.04) possibly_damaging(0.726) TCGA-37-4129-01 1 20141406 20141406 G A RNF186 Silent p.C63C 0.09 TCGA-37-4129-01 2 29255896 29255896 C A FAM179A Silent p.V703V 0.09 TCGA-37-4129-01 3 113667722 113667722 T G ZDHHC23 Missense_Mutation p.C25G 0.11 deleterious(0) possibly_damaging(0.587) TCGA-37-4129-01 6 10804030 10804030 A G MAK Silent p.L196L 0.04 TCGA-37-4130-01 10 102267302 102267302 C G SEC31B Missense_Mutation p.W221S 0.36 deleterious(0) probably_damaging(0.996) TCGA-37-4130-01 10 102849373 102849373 G A TLX1NB Missense_Mutation p.P97L 0.20 deleterious_low_confidence(0.01) benign(0.044) TCGA-37-4130-01 10 106974288 106974288 C T SORCS3 Missense_Mutation p.R822W 0.39 deleterious(0) possibly_damaging(0.677) TCGA-37-4130-01 10 115348019 115348019 G T HABP2 Missense_Mutation p.G525V 0.34 deleterious(0) probably_damaging(1) TCGA-37-4130-01 10 115385812 115385812 C G NRAP Missense_Mutation p.Q746H 0.30 tolerated(0.09) probably_damaging(0.999) TCGA-37-4130-01 10 116070142 116070142 G T AFAP1L2 Missense_Mutation p.P285T 0.34 tolerated(0.07) benign(0.037) TCGA-37-4130-01 10 118957098 118957098 C A KCNK18 Nonsense_Mutation p.Y33* 0.49 TCGA-37-4130-01 10 119015020 119015020 G T SLC18A2 Missense_Mutation p.R274L 0.34 tolerated(0.09) benign(0.026) TCGA-37-4130-01 10 1230849 1230849 C T ADARB2 Silent p.R665R 0.15 TCGA-37-4130-01 10 123847394 123847394 C T TACC2 Silent p.C1793C 0.49 TCGA-37-4130-01 10 124352009 124352009 G T DMBT1 Missense_Mutation p.V800L 0.19 deleterious(0.05) unknown(0) TCGA-37-4130-01 10 125514220 125514220 G A CPXM2 Missense_Mutation p.A659V 0.48 deleterious(0) probably_damaging(1) TCGA-37-4130-01 10 126505156 126505156 C T FAM175B Missense_Mutation p.H59Y 0.40 tolerated(0.28) probably_damaging(0.942) TCGA-37-4130-01 10 126716287 126716287 C T CTBP2 Silent p.Q14Q 0.51 TCGA-37-4130-01 10 127522420 127522420 G T BCCIP Missense_Mutation p.V227L 0.06 tolerated(0.25) benign(0.333) TCGA-37-4130-01 10 13276219 13276219 C T UCMA Missense_Mutation p.A14T 0.35 tolerated(0.48) benign(0.056) TCGA-37-4130-01 10 133784234 133784234 G A BNIP3 Silent p.S149S 0.13 TCGA-37-4130-01 10 134898489 134898489 G T GPR123 5'Flank 0.41 TCGA-37-4130-01 10 135003296 135003296 G A KNDC1 Silent p.E518E 0.28 TCGA-37-4130-01 10 135166006 135166006 C A PRAP1 3'UTR 0.14 TCGA-37-4130-01 10 13642259 13642259 G T PRPF18 Nonsense_Mutation p.E54* 0.28 TCGA-37-4130-01 10 1405935 1405935 C A ADARB2 Missense_Mutation p.W122L 0.12 tolerated(0.11) probably_damaging(0.997) TCGA-37-4130-01 10 16794635 16794635 G A RSU1 Silent p.N167N 0.29 TCGA-37-4130-01 10 16948303 16948303 C A CUBN Missense_Mutation p.S2604I 0.28 tolerated(0.11) benign(0.082) TCGA-37-4130-01 10 18276581 18276581 G A SLC39A12 Splice_Site p.X423_splice 0.26 TCGA-37-4130-01 10 20465961 20465961 G T PLXDC2 Missense_Mutation p.R306L 0.22 deleterious(0) probably_damaging(0.975) TCGA-37-4130-01 10 21104595 21104595 C A NEBL Nonsense_Mutation p.E734* 0.20 TCGA-37-4130-01 10 25273711 25273711 C A ENKUR Missense_Mutation p.D240Y 0.37 deleterious(0.01) benign(0.001) TCGA-37-4130-01 10 25887868 25887868 G T GPR158 Missense_Mutation p.G1105C 0.25 tolerated(0.07) benign(0.289) TCGA-37-4130-01 10 32120667 32120667 C A ARHGAP12 Missense_Mutation p.R483L 0.15 deleterious(0) probably_damaging(0.994) TCGA-37-4130-01 10 37486238 37486238 G A ANKRD30A Splice_Site p.X825_splice 0.19 TCGA-37-4130-01 10 43088333 43088333 C A ZNF33B Missense_Mutation p.G689W 0.23 deleterious(0) probably_damaging(1) TCGA-37-4130-01 10 46143931 46143931 C A ZFAND4 Missense_Mutation p.R127L 0.26 deleterious(0) benign(0.166) TCGA-37-4130-01 10 46322246 46322246 G C AGAP4 Missense_Mutation p.P370R 0.28 deleterious(0.03) probably_damaging(0.996) TCGA-37-4130-01 10 48388343 48388343 G T RBP3 Missense_Mutation p.S845R 0.21 deleterious(0) possibly_damaging(0.637) TCGA-37-4130-01 10 49448502 49448502 C A FRMPD2 Missense_Mutation p.V201L 0.25 tolerated(0.41) benign(0.003) TCGA-37-4130-01 10 5009137 5009137 C G AKR1C1 Missense_Mutation p.R91G 0.10 deleterious(0.04) benign(0.101) TCGA-37-4130-01 10 50667154 50667154 T A ERCC6 Missense_Mutation p.N1397Y 0.25 deleterious(0) probably_damaging(1) TCGA-37-4130-01 10 52569729 52569729 G T A1CF Missense_Mutation p.Q520K 0.37 tolerated(0.3) benign(0.393) TCGA-37-4130-01 10 55566352 55566352 A T PCDH15 Missense_Mutation p.M1678K 0.15 deleterious_low_confidence(0) benign(0.001) TCGA-37-4130-01 10 55782869 55782869 C A PCDH15 Missense_Mutation p.S770I 0.34 deleterious(0.01) benign(0.403) TCGA-37-4130-01 10 56367717 56367717 T C PCDH15 Intron 0.10 TCGA-37-4130-01 10 5963500 5963500 G T FBXO18 Missense_Mutation p.G815W 0.22 deleterious(0.01) probably_damaging(0.992) TCGA-37-4130-01 10 61900227 61900227 C A ANK3 Intron 0.21 TCGA-37-4130-01 10 62631364 62631364 T A RHOBTB1 Missense_Mutation p.Y656F 0.34 tolerated(0.08) probably_damaging(0.986) TCGA-37-4130-01 10 69918285 69918285 T C MYPN Missense_Mutation p.F454L 0.42 tolerated(1) possibly_damaging(0.484) TCGA-37-4130-01 10 69957210 69957210 G T MYPN Missense_Mutation p.G1087V 0.19 deleterious(0) probably_damaging(0.928) TCGA-37-4130-01 10 71129218 71129218 A T HK1 Missense_Mutation p.Y242F 0.23 tolerated(0.13) probably_damaging(0.984) TCGA-37-4130-01 10 74631335 74631335 C T MCU Silent p.R286R 0.22 TCGA-37-4130-01 10 75158001 75158001 T A ANXA7 Missense_Mutation p.Y66F 0.17 tolerated(0.21) unknown(0) TCGA-37-4130-01 10 75301441 75301441 C A USP54 Missense_Mutation p.G210C 0.43 deleterious(0) probably_damaging(1) TCGA-37-4130-01 10 76790481 76790481 A C KAT6B Missense_Mutation p.M1967L 0.22 possibly_damaging(0.801) TCGA-37-4130-01 10 82126828 82126828 C A DYDC2 3'UTR 0.22 TCGA-37-4130-01 10 83635780 83635780 A T NRG3 Silent p.A228A 0.20 TCGA-37-4130-01 10 85933634 85933634 G C C10orf99 Silent p.L9L 0.32 TCGA-37-4130-01 10 88441246 88441246 G T LDB3 Missense_Mutation p.E125D 0.27 tolerated(0.45) benign(0.039) TCGA-37-4130-01 10 91098605 91098605 G C IFIT3 Missense_Mutation p.G65R 0.26 deleterious(0) probably_damaging(0.987) TCGA-37-4130-01 10 95275184 95275184 G T CEP55 Missense_Mutation p.W184L 0.24 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 10 95459786 95459786 C T FRA10AC1 Splice_Site p.X26_splice 0.12 TCGA-37-4130-01 10 95660719 95660719 C A SLC35G1 Silent p.T190T 0.14 TCGA-37-4130-01 10 96022489 96022489 G T PLCE1 Missense_Mutation p.Q1351H 0.46 deleterious(0) probably_damaging(1) TCGA-37-4130-01 10 96333894 96333894 A T HELLS Missense_Mutation p.T219S 0.11 tolerated(0.08) benign(0.008) TCGA-37-4130-01 10 96480266 96480266 G T CYP2C18 Silent p.L311L 0.43 TCGA-37-4130-01 10 98155636 98155636 A T TLL2 Missense_Mutation p.F509Y 0.22 deleterious(0) probably_damaging(1) TCGA-37-4130-01 10 98180752 98180752 A T TLL2 Missense_Mutation p.F295Y 0.43 tolerated(0.62) benign(0.091) TCGA-37-4130-01 11 101323754 101323754 C G TRPC6 Missense_Mutation p.A910P 0.45 tolerated(0.05) probably_damaging(0.997) TCGA-37-4130-01 11 102980355 102980355 C T DYNC2H1 Nonsense_Mutation p.Q18* 0.26 TCGA-37-4130-01 11 104963217 104963217 T A CARD17 3'UTR 0.64 TCGA-37-4130-01 11 105880199 105880199 T C MSANTD4 3'UTR 0.26 TCGA-37-4130-01 11 112088642 112088642 C A BCO2 3'UTR 0.08 TCGA-37-4130-01 11 1155621 1155621 C A MUC5AC Nonsense_Mutation p.C103* 0.53 TCGA-37-4130-01 11 119156042 119156042 A T CBL Silent p.P569P 0.19 TCGA-37-4130-01 11 123989360 123989360 C G VWA5A Missense_Mutation p.S197C 0.65 tolerated(0.09) benign(0.295) TCGA-37-4130-01 11 124764170 124764170 G A ROBO4 Silent p.S415S 0.33 TCGA-37-4130-01 11 1265526 1265526 C A MUC5B Silent p.A2472A 0.60 TCGA-37-4130-01 11 128642810 128642810 G A FLI1 Silent p.E173E 0.57 TCGA-37-4130-01 11 128781675 128781675 G T KCNJ5 Missense_Mutation p.L169F 0.20 deleterious(0) possibly_damaging(0.77) TCGA-37-4130-01 11 130286936 130286936 A G ADAMTS8 Missense_Mutation p.L332P 0.53 deleterious(0) probably_damaging(1) TCGA-37-4130-01 11 133790651 133790651 C A IGSF9B Missense_Mutation p.S990I 0.21 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-37-4130-01 11 134188820 134188820 A G GLB1L3 Missense_Mutation p.D649G 0.58 deleterious(0.05) benign(0.029) TCGA-37-4130-01 11 134253649 134253649 C A B3GAT1 Silent p.P182P 0.45 TCGA-37-4130-01 11 15222381 15222381 C G INSC Silent p.V282V 0.49 TCGA-37-4130-01 11 1651859 1651859 T C KRTAP5-5 3'UTR 0.48 TCGA-37-4130-01 11 18387415 18387415 G T GTF2H1 Nonstop_Mutation p.*549Lext*25 0.44 TCGA-37-4130-01 11 19246360 19246360 G T E2F8 Missense_Mutation p.Q817K 0.19 deleterious(0.04) benign(0.146) TCGA-37-4130-01 11 1955067 1955067 C G TNNT3 Missense_Mutation p.I96M 0.40 deleterious(0.01) probably_damaging(1) TCGA-37-4130-01 11 1955068 1955068 G A TNNT3 Splice_Site p.X96_splice 0.41 TCGA-37-4130-01 11 22381035 22381035 T C SLC17A6 Missense_Mutation p.C179R 0.39 deleterious(0.03) benign(0.396) TCGA-37-4130-01 11 24998138 24998138 C A LUZP2 Missense_Mutation p.A175E 0.44 deleterious(0) probably_damaging(0.998) TCGA-37-4130-01 11 25004787 25004787 T A LUZP2 Missense_Mutation p.L238H 0.14 tolerated(0.52) possibly_damaging(0.73) TCGA-37-4130-01 11 28045288 28045288 C G KIF18A Missense_Mutation p.E872Q 0.36 tolerated_low_confidence(0.57) benign(0.005) TCGA-37-4130-01 11 30032384 30032384 C T KCNA4 Missense_Mutation p.M614I 0.15 tolerated_low_confidence(0.34) possibly_damaging(0.577) TCGA-37-4130-01 11 30937213 30937213 C T DCDC1 Silent p.Q1166Q 0.36 TCGA-37-4130-01 11 34912051 34912051 C A APIP Missense_Mutation p.Q69H 0.10 deleterious(0.04) benign(0.076) TCGA-37-4130-01 11 36248847 36248847 C G LDLRAD3 Missense_Mutation p.L223V 0.38 tolerated_low_confidence(0.1) benign(0.296) TCGA-37-4130-01 11 36596852 36596852 T C RAG1 Silent p.S666S 0.12 TCGA-37-4130-01 11 3988868 3988868 G T STIM1 Missense_Mutation p.D76Y 0.46 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 11 40137205 40137205 G A LRRC4C Missense_Mutation p.P213L 0.13 deleterious(0) probably_damaging(1) TCGA-37-4130-01 11 4389312 4389312 C A OR52B4 Missense_Mutation p.D72Y 0.56 deleterious(0) probably_damaging(1) TCGA-37-4130-01 11 45275839 45275839 A G SYT13 Missense_Mutation p.F176L 0.12 tolerated(0.66) benign(0.004) TCGA-37-4130-01 11 45970984 45970984 G A PHF21A Missense_Mutation p.P398L 0.37 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 11 46404276 46404276 C T MDK Silent p.P128P 0.48 TCGA-37-4130-01 11 46625286 46625286 G A HARBI1 Nonsense_Mutation p.Q282* 0.37 TCGA-37-4130-01 11 47381526 47381526 A C SPI1 Missense_Mutation p.F71V 0.41 tolerated(0.08) benign(0.013) TCGA-37-4130-01 11 47648670 47648670 T C MTCH2 Missense_Mutation p.M215V 0.15 tolerated(0.36) benign(0.003) TCGA-37-4130-01 11 47721085 47721085 C A AGBL2 Nonsense_Mutation p.E203* 0.16 TCGA-37-4130-01 11 4791054 4791054 G C OR51F1 Missense_Mutation p.P32A 0.50 deleterious(0.02) benign(0.157) TCGA-37-4130-01 11 48239264 48239264 C A OR4B1 Missense_Mutation p.S301R 0.40 tolerated(0.44) benign(0.001) TCGA-37-4130-01 11 48285627 48285627 G C OR4X1 Missense_Mutation p.C72S 0.15 tolerated(1) benign(0.004) TCGA-37-4130-01 11 5153313 5153313 A T OR52A5 Missense_Mutation p.I187N 0.43 deleterious(0) probably_damaging(0.943) TCGA-37-4130-01 11 5253997 5253997 A T HBD 3'Flank 0.51 TCGA-37-4130-01 11 5264361 5264361 A T HBG1 3'Flank 0.41 TCGA-37-4130-01 11 5373047 5373047 A C OR51B6 Missense_Mutation p.T104P 0.04 deleterious(0.02) benign(0.439) TCGA-37-4130-01 11 5411273 5411273 A T OR51M1 Silent p.V215V 0.39 TCGA-37-4130-01 11 55433032 55433032 C T OR4C6 Silent p.Y130Y 0.15 TCGA-37-4130-01 11 55761301 55761301 G T OR5F1 Silent p.S267S 0.37 TCGA-37-4130-01 11 55927656 55927656 G T OR8K5 Silent p.I46I 0.12 TCGA-37-4130-01 11 55944617 55944617 G C OR5J2 Missense_Mutation p.S175T 0.10 deleterious(0) benign(0.232) TCGA-37-4130-01 11 56000155 56000155 G T OR5T2 Silent p.L169L 0.12 TCGA-37-4130-01 11 56086075 56086075 C A OR8K3 Missense_Mutation p.A98E 0.40 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-37-4130-01 11 57970811 57970811 C A OR1S2 Missense_Mutation p.E281D 0.40 tolerated(0.23) benign(0.007) TCGA-37-4130-01 11 58170098 58170098 G T OR5B3 Missense_Mutation p.S262Y 0.12 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-37-4130-01 11 58190311 58190311 G C OR5B2 Missense_Mutation p.L142V 0.13 deleterious_low_confidence(0) possibly_damaging(0.764) TCGA-37-4130-01 11 59419043 59419043 C G PATL1 Missense_Mutation p.V500L 0.22 deleterious(0) possibly_damaging(0.633) TCGA-37-4130-01 11 605146 605146 G T PHRF1 Missense_Mutation p.A394S 0.46 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 11 61404548 61404548 G - RPLP0P2 RNA 0.12 TCGA-37-4130-01 11 61959558 61959558 C A SCGB1D1 Missense_Mutation p.S29Y 0.52 deleterious(0.03) benign(0.175) TCGA-37-4130-01 11 62289128 62289128 G A AHNAK Missense_Mutation p.A4254V 0.34 possibly_damaging(0.508) TCGA-37-4130-01 11 62460177 62460177 C A BSCL2 Missense_Mutation p.Q241H 0.60 deleterious(0) probably_damaging(1) TCGA-37-4130-01 11 66135020 66135020 C A SLC29A2 Splice_Site p.X217_splice 0.18 TCGA-37-4130-01 11 66261088 66261088 G T DPP3 Missense_Mutation p.G458V 0.23 deleterious(0) probably_damaging(1) TCGA-37-4130-01 11 6653701 6653701 A T DCHS1 Silent p.T1014T 0.25 TCGA-37-4130-01 11 6789246 6789246 T G OR2AG2 Missense_Mutation p.T315P 0.43 deleterious_low_confidence(0.01) benign(0.421) TCGA-37-4130-01 11 6789247 6789247 G T OR2AG2 Silent p.S314S 0.44 TCGA-37-4130-01 11 68530172 68530172 C A CPT1A Missense_Mutation p.G600W 0.25 deleterious(0) probably_damaging(1) TCGA-37-4130-01 11 7022571 7022571 C A ZNF214 Missense_Mutation p.G115W 0.48 tolerated(0.2) benign(0.005) TCGA-37-4130-01 11 70338450 70338450 G A SHANK2 Missense_Mutation p.S811L 0.53 tolerated(0.14) benign(0.11) TCGA-37-4130-01 11 71821211 71821211 C A ANAPC15 Nonsense_Mutation p.E81* 0.14 TCGA-37-4130-01 11 721681 721681 G T EPS8L2 Missense_Mutation p.K295N 0.08 deleterious(0.02) possibly_damaging(0.846) TCGA-37-4130-01 11 75113534 75113534 C T RPS3 Intron 0.59 TCGA-37-4130-01 11 78277281 78277281 T C NARS2 Missense_Mutation p.E137G 0.48 deleterious(0) possibly_damaging(0.582) TCGA-37-4130-01 11 8248611 8248611 G T LMO1 Missense_Mutation p.S92R 0.37 tolerated(0.26) possibly_damaging(0.88) TCGA-37-4130-01 11 89774408 89774408 C G TRIM49C Missense_Mutation p.S350C 0.11 tolerated(0.1) benign(0.254) TCGA-37-4130-01 11 92615938 92615938 G T FAT3 Nonsense_Mutation p.E4106* 0.39 TCGA-37-4130-01 11 94322319 94322319 T G PIWIL4 Missense_Mutation p.I316S 0.07 deleterious(0) probably_damaging(0.998) TCGA-37-4130-01 11 94731452 94731452 A G KDM4D Missense_Mutation p.M306V 0.40 tolerated(1) benign(0) TCGA-37-4130-01 12 100219099 100219099 A G ANKS1B Missense_Mutation p.L68S 0.25 deleterious(0) probably_damaging(0.986) TCGA-37-4130-01 12 100660817 100660823 GCCATAA - DEPDC4 Frame_Shift_Del p.L11Rfs*4 0.38 TCGA-37-4130-01 12 10131610 10131610 T G CLEC12A Missense_Mutation p.L56R 0.46 deleterious(0) probably_damaging(1) TCGA-37-4130-01 12 101368649 101368649 G A ANO4 Missense_Mutation p.R160H 0.36 tolerated(0.08) possibly_damaging(0.88) TCGA-37-4130-01 12 101680147 101680147 C G UTP20 Missense_Mutation p.H125Q 0.24 deleterious(0) possibly_damaging(0.873) TCGA-37-4130-01 12 102043113 102043113 C A MYBPC1 Silent p.I399I 0.23 TCGA-37-4130-01 12 109604717 109604717 G T ACACB Missense_Mutation p.K235N 0.21 deleterious(0) possibly_damaging(0.493) TCGA-37-4130-01 12 111356966 111356966 C A MYL2 Missense_Mutation p.G12V 0.20 tolerated(0.16) unknown(0) TCGA-37-4130-01 12 112744039 112744039 C A HECTD4 Splice_Site p.X245_splice 0.29 TCGA-37-4130-01 12 113332401 113332401 G C RPH3A Missense_Mutation p.M598I 0.22 tolerated(0.06) benign(0.229) TCGA-37-4130-01 12 113388502 113388502 G T OAS3 Missense_Mutation p.G460V 0.18 deleterious(0) probably_damaging(1) TCGA-37-4130-01 12 113559401 113559401 G A RASAL1 Missense_Mutation p.A114V 0.27 deleterious(0.02) benign(0.258) TCGA-37-4130-01 12 121001281 121001281 G T RNF10 Silent p.G462G 0.28 TCGA-37-4130-01 12 121435423 121435423 C A HNF1A Missense_Mutation p.Q486K 0.21 deleterious(0.02) benign(0.291) TCGA-37-4130-01 12 121603173 121603173 A G P2RX7 Missense_Mutation p.N183D 0.25 tolerated(0.23) benign(0.102) TCGA-37-4130-01 12 121670831 121670831 A G P2RX4 Missense_Mutation p.Y375C 0.25 deleterious(0) possibly_damaging(0.88) TCGA-37-4130-01 12 121880330 121880330 G C KDM2B Missense_Mutation p.P972A 0.12 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-37-4130-01 12 124416394 124416394 G T DNAH10 Missense_Mutation p.R4258S 0.20 possibly_damaging(0.904) TCGA-37-4130-01 12 125603301 125603301 G T AACS Missense_Mutation p.D371Y 0.23 deleterious(0) probably_damaging(0.997) TCGA-37-4130-01 12 129558405 129558405 C G TMEM132D 3'UTR 0.17 TCGA-37-4130-01 12 129558831 129558831 G T TMEM132D Missense_Mutation p.D963E 0.38 deleterious(0) benign(0.388) TCGA-37-4130-01 12 131276340 131276340 T C STX2 3'UTR 0.21 TCGA-37-4130-01 12 132195850 132195850 G T SFSWAP Missense_Mutation p.A26S 0.28 tolerated_low_confidence(0.1) possibly_damaging(0.784) TCGA-37-4130-01 12 133768092 133768092 G A ZNF268 Missense_Mutation p.M84I 0.20 deleterious(0.04) benign(0.011) TCGA-37-4130-01 12 13906766 13906766 G A GRIN2B Silent p.D165D 0.52 TCGA-37-4130-01 12 14952586 14952586 T C WBP11 Missense_Mutation p.E58G 0.54 deleterious(0.01) unknown(0) TCGA-37-4130-01 12 176451 176451 C G IQSEC3 Missense_Mutation p.P135A 0.35 deleterious_low_confidence(0.03) benign(0.204) TCGA-37-4130-01 12 20870161 20870161 C A SLCO1C1 Missense_Mutation p.L258I 0.46 tolerated(0.1) possibly_damaging(0.516) TCGA-37-4130-01 12 24736348 24736348 G A LINC00477 RNA 0.66 TCGA-37-4130-01 12 2676928 2676928 C A CACNA1C Nonsense_Mutation p.C621* 0.58 TCGA-37-4130-01 12 29524524 29524524 C A ERGIC2 Nonsense_Mutation p.E15* 0.38 TCGA-37-4130-01 12 29592274 29592274 C A OVCH1 Missense_Mutation p.W1084L 0.28 tolerated_low_confidence(0.39) benign(0.139) TCGA-37-4130-01 12 33592389 33592389 C A SYT10 Silent p.L23L 0.25 TCGA-37-4130-01 12 43944793 43944793 C A ADAMTS20 Silent p.S124S 0.19 TCGA-37-4130-01 12 45796986 45796986 G A ANO6 Missense_Mutation p.D603N 0.26 tolerated(0.29) benign(0.073) TCGA-37-4130-01 12 4735824 4735824 G A AKAP3 Silent p.P748P 0.52 TCGA-37-4130-01 12 48723793 48723793 G T H1FNT Missense_Mutation p.R240M 0.31 deleterious(0) possibly_damaging(0.702) TCGA-37-4130-01 12 49437514 49437514 C G KMT2D Missense_Mutation p.A1791P 0.30 probably_damaging(0.959) TCGA-37-4130-01 12 49666806 49666806 A T TUBA1C Silent p.T382T 0.38 TCGA-37-4130-01 12 50055800 50055800 T C FMNL3 Missense_Mutation p.K134R 0.24 tolerated(0.72) benign(0.047) TCGA-37-4130-01 12 51740465 51740465 C A GALNT6 3'Flank 0.13 TCGA-37-4130-01 12 51751182 51751182 C A GALNT6 Missense_Mutation p.G518V 0.30 tolerated(0.39) probably_damaging(0.993) TCGA-37-4130-01 12 52309905 52309905 C A ACVRL1 Silent p.P378P 0.26 TCGA-37-4130-01 12 52818113 52818113 C T KRT75 3'UTR 0.36 TCGA-37-4130-01 12 52845399 52845399 G T KRT6B Missense_Mutation p.A155D 0.20 tolerated(0.16) benign(0.109) TCGA-37-4130-01 12 52938391 52938391 G T KRT71 Silent p.G499G 0.25 TCGA-37-4130-01 12 53044333 53044333 C A KRT2 Missense_Mutation p.R197L 0.32 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 12 53227879 53227879 C T KRT79 Missense_Mutation p.G56S 0.33 tolerated(0.12) benign(0.008) TCGA-37-4130-01 12 53689725 53689725 G T PFDN5 Missense_Mutation p.G59W 0.35 deleterious(0) probably_damaging(1) TCGA-37-4130-01 12 56418877 56418877 C - IKZF4 Frame_Shift_Del p.P75Qfs*6 0.23 TCGA-37-4130-01 12 57553725 57553725 G T LRP1 Missense_Mutation p.R639L 0.24 possibly_damaging(0.868) TCGA-37-4130-01 12 57864833 57864833 C T GLI1 Silent p.A770A 0.14 TCGA-37-4130-01 12 62148677 62148677 G T FAM19A2 Silent p.R79R 0.30 TCGA-37-4130-01 12 67072734 67072734 G T GRIP1 5'UTR 0.30 TCGA-37-4130-01 12 6748155 6748155 T C ACRBP Missense_Mutation p.S492G 0.16 deleterious(0.01) probably_damaging(0.978) TCGA-37-4130-01 12 6967714 6967714 C T USP5 Silent p.L331L 0.59 TCGA-37-4130-01 12 7077743 7077743 T C PHB2 Missense_Mutation p.N103S 0.10 tolerated(0.11) possibly_damaging(0.483) TCGA-37-4130-01 12 7080060 7080060 T C EMG1 5'UTR 0.68 TCGA-37-4130-01 12 70986297 70986297 C A PTPRB Silent p.V515V 0.32 TCGA-37-4130-01 12 71031184 71031184 T G PTPRB 5'UTR 0.31 TCGA-37-4130-01 12 76425050 76425050 T G PHLDA1 Missense_Mutation p.K158Q 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-37-4130-01 12 81568564 81568564 T G ACSS3 Intron 0.45 TCGA-37-4130-01 12 85521639 85521639 G - LRRIQ1 Frame_Shift_Del p.W1346Cfs*35 0.25 TCGA-37-4130-01 12 91545571 91545571 T A DCN Splice_Site p.X249_splice 0.23 TCGA-37-4130-01 12 92818529 92818529 G T CLLU1 Missense_Mutation p.A25S 0.34 possibly_damaging(0.578) TCGA-37-4130-01 12 98928260 98928260 A T TMPO 3'UTR 0.23 TCGA-37-4130-01 13 102105087 102105087 C A ITGBL1 5'UTR 0.56 TCGA-37-4130-01 13 111147785 111147785 C G COL4A2 Missense_Mutation p.P1244R 0.51 possibly_damaging(0.804) TCGA-37-4130-01 13 111372185 111372185 G T ING1 Missense_Mutation p.G392V 0.51 deleterious(0) probably_damaging(1) TCGA-37-4130-01 13 113739259 113739259 G T MCF2L Missense_Mutation p.E705D 0.60 tolerated(0.07) benign(0.339) TCGA-37-4130-01 13 21746529 21746529 T C SKA3 Missense_Mutation p.R94G 0.17 deleterious(0) possibly_damaging(0.798) TCGA-37-4130-01 13 23913255 23913255 T C SACS Missense_Mutation p.H1587R 0.12 probably_damaging(0.989) TCGA-37-4130-01 13 25264505 25264505 G A ATP12A Silent p.K192K 0.41 TCGA-37-4130-01 13 25338366 25338366 G T RNF17 Missense_Mutation p.G9W 0.23 tolerated_low_confidence(0.18) benign(0.091) TCGA-37-4130-01 13 25744390 25744390 G T AMER2 Silent p.G456G 0.38 TCGA-37-4130-01 13 29286987 29286987 A T SLC46A3 Missense_Mutation p.I297K 0.45 deleterious(0) possibly_damaging(0.877) TCGA-37-4130-01 13 29599546 29599546 G A MTUS2 Silent p.E247E 0.41 TCGA-37-4130-01 13 29599744 29599744 G T MTUS2 Missense_Mutation p.Q313H 0.22 deleterious(0) possibly_damaging(0.891) TCGA-37-4130-01 13 29600583 29600584 - A MTUS2 Frame_Shift_Ins p.S594Vfs*6 0.24 TCGA-37-4130-01 13 31531074 31531074 G T TEX26 Missense_Mutation p.W126L 0.40 tolerated(0.14) probably_damaging(0.933) TCGA-37-4130-01 13 32850686 32850686 A T FRY Missense_Mutation p.E2791V 0.39 deleterious(0) probably_damaging(0.939) TCGA-37-4130-01 13 33110103 33110103 G A N4BP2L2 Intron 0.10 TCGA-37-4130-01 13 36410179 36410179 C A DCLK1 Missense_Mutation p.C407F 0.09 deleterious(0) possibly_damaging(0.506) TCGA-37-4130-01 13 38154733 38154733 G T POSTN Silent p.S498S 0.17 TCGA-37-4130-01 13 38211100 38211100 G T TRPC4 Missense_Mutation p.D963E 0.47 deleterious_low_confidence(0.01) benign(0.009) TCGA-37-4130-01 13 42245219 42245219 C A VWA8 Missense_Mutation p.A1492S 0.17 tolerated(0.17) benign(0.05) TCGA-37-4130-01 13 43810780 43810780 A C ENOX1 Missense_Mutation p.L569R 0.17 tolerated(0.71) possibly_damaging(0.897) TCGA-37-4130-01 13 44455125 44455125 G T LACC1 Missense_Mutation p.A2S 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.838) TCGA-37-4130-01 13 51915219 51915219 C A SERPINE3 5'UTR 0.46 TCGA-37-4130-01 13 52026665 52026665 G C INTS6 5'UTR 0.10 TCGA-37-4130-01 13 52603042 52603042 G T UTP14C Silent p.G34G 0.19 TCGA-37-4130-01 13 52603802 52603802 G T UTP14C Missense_Mutation p.A288S 0.19 tolerated(0.21) probably_damaging(0.919) TCGA-37-4130-01 13 53603157 53603157 C G OLFM4 Missense_Mutation p.S62R 0.42 tolerated_low_confidence(0.48) unknown(0) TCGA-37-4130-01 13 53624318 53624318 T C OLFM4 Silent p.Y315Y 0.52 TCGA-37-4130-01 13 58206876 58206876 G T PCDH17 Missense_Mutation p.V66L 0.15 deleterious(0.04) probably_damaging(0.999) TCGA-37-4130-01 13 58207949 58207949 G C PCDH17 Silent p.T423T 0.33 TCGA-37-4130-01 13 58208033 58208033 C T PCDH17 Silent p.P451P 0.17 TCGA-37-4130-01 13 61084762 61084762 A T TDRD3 Splice_Site p.X339_splice 0.55 TCGA-37-4130-01 13 77837818 77837818 A G MYCBP2 Missense_Mutation p.L475P 0.09 probably_damaging(0.975) TCGA-37-4130-01 13 84455559 84455559 G T SLITRK1 Silent p.I28I 0.53 TCGA-37-4130-01 13 95121074 95121074 G T DCT Missense_Mutation p.P174Q 0.59 deleterious(0) probably_damaging(0.986) TCGA-37-4130-01 14 100796074 100796074 C A SLC25A47 3'UTR 0.41 TCGA-37-4130-01 14 100934393 100934393 G T WDR25 Missense_Mutation p.Q286H 0.16 deleterious(0.01) probably_damaging(0.979) TCGA-37-4130-01 14 101201162 101201162 G T DLK1 Missense_Mutation p.V361F 0.21 deleterious(0) probably_damaging(0.981) TCGA-37-4130-01 14 102496609 102496609 G T DYNC1H1 Missense_Mutation p.E3291D 0.32 benign(0.018) TCGA-37-4130-01 14 105409993 105409993 G T AHNAK2 Missense_Mutation p.P3932H 0.35 probably_damaging(0.999) TCGA-37-4130-01 14 106494166 106494166 A T IGHV2-5 Missense_Mutation p.V109E 0.31 tolerated(1) benign(0.005) TCGA-37-4130-01 14 107179060 107179060 C G IGHV2-70 Silent p.L39L 0.10 TCGA-37-4130-01 14 19563340 19563340 G C POTEG Intron 0.14 TCGA-37-4130-01 14 20248833 20248833 A G OR4M1 Missense_Mutation p.M118V 0.09 deleterious(0) probably_damaging(0.993) TCGA-37-4130-01 14 20248864 20248864 G T OR4M1 Missense_Mutation p.R128L 0.20 deleterious(0) benign(0.217) TCGA-37-4130-01 14 20666399 20666399 C A OR11G2 Missense_Mutation p.S302Y 0.12 tolerated(0.08) benign(0.078) TCGA-37-4130-01 14 21360364 21360364 G T RNASE3 3'UTR 0.13 TCGA-37-4130-01 14 21469684 21469684 G T SLC39A2 Missense_Mutation p.W292C 0.31 tolerated(0.14) benign(0.126) TCGA-37-4130-01 14 23511800 23511800 G T PSMB11 Silent p.L122L 0.31 TCGA-37-4130-01 14 23859415 23859415 G A MYH6 Missense_Mutation p.R1195C 0.44 deleterious(0) probably_damaging(1) TCGA-37-4130-01 14 24624698 24624698 C A RNF31 Missense_Mutation p.P794T 0.15 deleterious(0) probably_damaging(1) TCGA-37-4130-01 14 24846874 24846874 G T NFATC4 3'UTR 0.12 TCGA-37-4130-01 14 33165262 33165262 G T AKAP6 Silent p.V982V 0.14 TCGA-37-4130-01 14 42360932 42360932 C G LRFN5 Missense_Mutation p.S622C 0.44 tolerated_low_confidence(0.94) benign(0) TCGA-37-4130-01 14 44974790 44974790 T A FSCB Silent p.A467A 0.21 TCGA-37-4130-01 14 44975910 44975910 G T FSCB Missense_Mutation p.P94H 0.13 tolerated(0.05) probably_damaging(0.998) TCGA-37-4130-01 14 47120455 47120455 C A RPL10L Missense_Mutation p.R162L 0.36 deleterious(0.04) benign(0.117) TCGA-37-4130-01 14 52171541 52171541 A T FRMD6 Missense_Mutation p.E149V 0.31 deleterious(0) possibly_damaging(0.635) TCGA-37-4130-01 14 52922108 52922108 G A TXNDC16 Silent p.I592I 0.15 TCGA-37-4130-01 14 53348023 53348023 C A FERMT2 Nonsense_Mutation p.E231* 0.16 TCGA-37-4130-01 14 63174542 63174542 G - KCNH5 Frame_Shift_Del p.P884Rfs*2 0.14 TCGA-37-4130-01 14 64519032 64519032 G T SYNE2 Missense_Mutation p.G2801C 0.36 possibly_damaging(0.789) TCGA-37-4130-01 14 64954224 64954224 T A ZBTB25 Missense_Mutation p.Y242F 0.35 tolerated(0.27) probably_damaging(0.982) TCGA-37-4130-01 14 64998761 64998761 C T RP11-973N13.4 Intron 0.15 TCGA-37-4130-01 14 65197786 65197786 G C PLEKHG3 Missense_Mutation p.D194H 0.31 deleterious(0) possibly_damaging(0.769) TCGA-37-4130-01 14 65262197 65262197 G T SPTB Missense_Mutation p.A501D 0.31 deleterious(0.05) probably_damaging(0.991) TCGA-37-4130-01 14 65270358 65270358 C A SPTB Silent p.L147L 0.30 TCGA-37-4130-01 14 65494170 65494170 G T FNTB Splice_Site p.X125_splice 0.16 TCGA-37-4130-01 14 68047729 68047729 C G PLEKHH1 Silent p.R1086R 0.15 TCGA-37-4130-01 14 68257314 68257314 C A ZFYVE26 Missense_Mutation p.Q910H 0.14 deleterious(0) probably_damaging(0.997) TCGA-37-4130-01 14 70714222 70714222 G T ADAM21P1 RNA 0.10 TCGA-37-4130-01 14 70925153 70925153 G T ADAM21 Missense_Mutation p.A313S 0.12 tolerated(0.1) benign(0.101) TCGA-37-4130-01 14 71205088 71205089 - A MAP3K9 Frame_Shift_Ins p.W573Lfs*42 0.17 TCGA-37-4130-01 14 72202043 72202043 G T SIPA1L1 Missense_Mutation p.L1707F 0.17 tolerated(0.7) benign(0.255) TCGA-37-4130-01 14 73572626 73572626 G T RBM25 Missense_Mutation p.R405L 0.19 unknown(0) TCGA-37-4130-01 14 74058937 74058937 C T ACOT4 Missense_Mutation p.R92C 0.12 deleterious(0) probably_damaging(0.998) TCGA-37-4130-01 14 74533501 74533501 C T ALDH6A1 Silent p.E377E 0.20 TCGA-37-4130-01 14 74537973 74537973 T C ALDH6A1 Missense_Mutation p.M219V 0.41 tolerated(0.09) possibly_damaging(0.726) TCGA-37-4130-01 14 77297705 77297705 C T C14orf166B Missense_Mutation p.A126V 0.18 deleterious(0) possibly_damaging(0.73) TCGA-37-4130-01 14 77715172 77715172 G T TMEM63C Silent p.V609V 0.19 TCGA-37-4130-01 14 80163983 80163983 A C NRXN3 Missense_Mutation p.L836F 0.12 deleterious(0) benign(0.011) TCGA-37-4130-01 14 80271460 80271460 A T NRXN3 Silent p.T937T 0.33 TCGA-37-4130-01 14 86089752 86089752 G T FLRT2 Missense_Mutation p.G632W 0.31 deleterious(0) probably_damaging(1) TCGA-37-4130-01 14 93119017 93119017 T A RIN3 Silent p.S541S 0.17 TCGA-37-4130-01 14 93684927 93684927 G T UBR7 Missense_Mutation p.G219V 0.28 tolerated(0.26) benign(0.432) TCGA-37-4130-01 14 94711020 94711020 A T PPP4R4 Missense_Mutation p.I439L 0.11 tolerated(0.31) benign(0.003) TCGA-37-4130-01 14 94756472 94756472 G T SERPINA10 Silent p.S153S 0.16 TCGA-37-4130-01 14 95058760 95058760 G A SERPINA5 3'UTR 0.29 TCGA-37-4130-01 14 99724057 99724057 G A BCL11B Nonsense_Mutation p.Q60* 0.24 TCGA-37-4130-01 15 100211764 100211764 G T MEF2A Missense_Mutation p.D100Y 0.25 deleterious(0) probably_damaging(0.996) TCGA-37-4130-01 15 101170148 101170148 A T ASB7 Missense_Mutation p.T240S 0.25 tolerated(0.23) benign(0.004) TCGA-37-4130-01 15 20874928 20874928 A G NBEAP1 RNA 0.17 TCGA-37-4130-01 15 23810980 23810980 G T MKRN3 Missense_Mutation p.Q17H 0.32 tolerated(0.11) unknown(0) TCGA-37-4130-01 15 23810992 23810992 G - MKRN3 Frame_Shift_Del p.A22Qfs*39 0.50 TCGA-37-4130-01 15 23890423 23890423 C A MAGEL2 Missense_Mutation p.D220Y 0.27 deleterious(0.03) benign(0.042) TCGA-37-4130-01 15 23931489 23931489 G T NDN Silent p.S292S 0.25 TCGA-37-4130-01 15 24922239 24922239 G T NPAP1 Missense_Mutation p.D409Y 0.25 deleterious(0.03) probably_damaging(0.961) TCGA-37-4130-01 15 25319364 25319364 G A SNORD116-9 3'Flank 0.40 TCGA-37-4130-01 15 25451308 25451308 A T SNORD115-22 5'Flank 0.13 TCGA-37-4130-01 15 25453277 25453277 A T SNORD115-21 RNA 0.18 TCGA-37-4130-01 15 25463789 25463789 G T SNORD115-27 5'Flank 0.38 TCGA-37-4130-01 15 25470206 25470206 G T SNORD115-27 3'Flank 0.46 TCGA-37-4130-01 15 25601138 25601138 G C UBE3A Missense_Mutation p.I678M 0.37 tolerated(0.22) benign(0.002) TCGA-37-4130-01 15 25924902 25924902 G T ATP10A Nonsense_Mutation p.C1362* 0.41 TCGA-37-4130-01 15 26806217 26806217 G A GABRB3 Silent p.F314F 0.40 TCGA-37-4130-01 15 27184560 27184560 C A GABRA5 Intron 0.24 TCGA-37-4130-01 15 29561202 29561202 C T NDNL2 Silent p.R236R 0.19 TCGA-37-4130-01 15 33842391 33842391 G T RYR3 Missense_Mutation p.Q282H 0.22 probably_damaging(0.985) TCGA-37-4130-01 15 34642989 34642989 C T NUTM1 Silent p.H270H 0.45 TCGA-37-4130-01 15 34647914 34647914 G T NUTM1 Nonsense_Mutation p.E541* 0.22 TCGA-37-4130-01 15 35086933 35086933 T A ACTC1 Missense_Mutation p.D26V 0.23 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-37-4130-01 15 40662391 40662391 A T DISP2 Missense_Mutation p.S1360C 0.35 tolerated_low_confidence(0.06) benign(0.069) TCGA-37-4130-01 15 42057239 42057239 G T MGA Missense_Mutation p.G2634C 0.19 deleterious(0.01) possibly_damaging(0.504) TCGA-37-4130-01 15 42150893 42150893 C G SPTBN5 Silent p.L2711L 0.23 TCGA-37-4130-01 15 43552650 43552650 C A TGM5 Missense_Mutation p.R46S 0.26 tolerated(0.2) benign(0.026) TCGA-37-4130-01 15 43893736 43893736 G T STRC Missense_Mutation p.P1520H 0.22 tolerated(0.09) probably_damaging(0.931) TCGA-37-4130-01 15 44892805 44892805 G A SPG11 Silent p.F1182F 0.11 TCGA-37-4130-01 15 48787326 48787326 G T FBN1 Missense_Mutation p.Q891K 0.55 benign(0) TCGA-37-4130-01 15 48791194 48791194 A G FBN1 Missense_Mutation p.S719P 0.43 benign(0.145) TCGA-37-4130-01 15 49575902 49575902 G T GALK2 Missense_Mutation p.R248L 0.52 deleterious(0) possibly_damaging(0.73) TCGA-37-4130-01 15 50288895 50288895 T A ATP8B4 Missense_Mutation p.S190C 0.10 deleterious(0.01) possibly_damaging(0.779) TCGA-37-4130-01 15 51350171 51350171 G T TNFAIP8L3 Silent p.L262L 0.43 TCGA-37-4130-01 15 51973958 51973958 G T SCG3 Silent p.G2G 0.39 TCGA-37-4130-01 15 52258020 52258020 T A LEO1 Missense_Mutation p.D247V 0.15 deleterious_low_confidence(0) benign(0.202) TCGA-37-4130-01 15 52402026 52402026 G T BCL2L10 3'UTR 0.11 TCGA-37-4130-01 15 54307145 54307145 G T UNC13C Missense_Mutation p.S682I 0.12 deleterious_low_confidence(0.01) benign(0.393) TCGA-37-4130-01 15 58834021 58834021 T A LIPC Missense_Mutation p.V104E 0.25 deleterious(0) possibly_damaging(0.588) TCGA-37-4130-01 15 60643412 60643412 G A ANXA2 Missense_Mutation p.R291W 0.53 tolerated(0.06) benign(0.032) TCGA-37-4130-01 15 65693244 65693245 CA T IGDCC4 Frame_Shift_Del p.V247Efs*16 0.44 TCGA-37-4130-01 15 72057412 72057412 A G THSD4 Silent p.R881R 0.16 TCGA-37-4130-01 15 73470731 73470731 T C NEO1 Silent p.N418N 0.35 TCGA-37-4130-01 15 74623070 74623070 A C CCDC33 Missense_Mutation p.H508P 0.33 deleterious(0.02) probably_damaging(0.965) TCGA-37-4130-01 15 74703941 74703941 G T SEMA7A Nonsense_Mutation p.C511* 0.20 TCGA-37-4130-01 15 75706601 75706601 G T SIN3A Missense_Mutation p.Q140K 0.11 tolerated(0.15) benign(0.009) TCGA-37-4130-01 15 76074689 76074689 G T RN7SL319P 5'Flank 0.24 TCGA-37-4130-01 15 77407182 77407182 T C PEAK1 Silent p.L1519L 0.26 TCGA-37-4130-01 15 77906701 77906701 G T LINGO1 Missense_Mutation p.S516R 0.39 deleterious(0.01) benign(0.348) TCGA-37-4130-01 15 78214370 78214370 C T RP11-114H24.7 3'Flank 0.27 TCGA-37-4130-01 15 78635925 78635925 C A CRABP1 Missense_Mutation p.R112S 0.40 deleterious(0) probably_damaging(1) TCGA-37-4130-01 15 81637264 81637264 G T TMC3 Missense_Mutation p.S454Y 0.11 tolerated(0.08) benign(0.379) TCGA-37-4130-01 15 83240114 83240114 G T CPEB1 Missense_Mutation p.A120D 0.14 deleterious_low_confidence(0) benign(0.268) TCGA-37-4130-01 15 85400611 85400611 C T ALPK3 Missense_Mutation p.A1083V 0.21 deleterious_low_confidence(0) benign(0.001) TCGA-37-4130-01 15 86207873 86207873 G T AKAP13 Missense_Mutation p.A1631S 0.27 tolerated(1) benign(0.007) TCGA-37-4130-01 15 88522447 88522447 C A NTRK3 Intron 0.46 TCGA-37-4130-01 15 88727529 88727529 G T NTRK3 Missense_Mutation p.H84N 0.35 deleterious(0) benign(0.303) TCGA-37-4130-01 15 89415289 89415289 C A ACAN Missense_Mutation p.D2387E 0.28 deleterious(0) benign(0.155) TCGA-37-4130-01 15 89417734 89417734 C A ACAN 3'UTR 0.36 TCGA-37-4130-01 15 89876337 89876337 G A POLG Missense_Mutation p.P217S 0.19 tolerated(0.14) probably_damaging(1) TCGA-37-4130-01 15 90996374 90996374 C T IQGAP1 Missense_Mutation p.T446I 0.23 deleterious(0.05) benign(0.027) TCGA-37-4130-01 15 93487694 93487694 G T CHD2 Nonsense_Mutation p.E368* 0.30 TCGA-37-4130-01 15 94882538 94882538 G T MCTP2 Silent p.V219V 0.30 TCGA-37-4130-01 16 11071235 11071235 C T CLEC16A Silent p.Y294Y 0.45 TCGA-37-4130-01 16 11857454 11857454 C A ZC3H7A Missense_Mutation p.G628C 0.57 deleterious(0.01) benign(0.246) TCGA-37-4130-01 16 16108435 16108435 G T ABCC1 Missense_Mutation p.V147L 0.56 tolerated(1) benign(0) TCGA-37-4130-01 16 20990715 20990715 C A DNAH3 Missense_Mutation p.E2671D 0.54 deleterious(0.02) possibly_damaging(0.456) TCGA-37-4130-01 16 21261267 21261267 T A ANKS4B Missense_Mutation p.M127K 0.56 tolerated(0.11) benign(0.175) TCGA-37-4130-01 16 21696579 21696579 G T OTOA Missense_Mutation p.R99L 0.52 tolerated(0.85) benign(0.001) TCGA-37-4130-01 16 21737896 21737896 A T OTOA Missense_Mutation p.S645C 0.54 deleterious(0.01) probably_damaging(0.993) TCGA-37-4130-01 16 21995582 21995582 G A PDZD9 3'UTR 0.27 TCGA-37-4130-01 16 22130262 22130262 A T VWA3A Missense_Mutation p.I344F 0.54 tolerated(0.09) possibly_damaging(0.482) TCGA-37-4130-01 16 22134932 22134932 A T VWA3A Splice_Site p.X480_splice 0.60 TCGA-37-4130-01 16 24888626 24888626 G T SLC5A11 Silent p.L175L 0.57 TCGA-37-4130-01 16 25239945 25239945 G T AQP8 3'UTR 0.50 TCGA-37-4130-01 16 27840186 27840186 G A GSG1L Missense_Mutation p.R252C 0.28 tolerated(0.05) probably_damaging(0.998) TCGA-37-4130-01 16 2817712 2817712 G T SRRM2 Missense_Mutation p.G2395C 0.59 probably_damaging(0.999) TCGA-37-4130-01 16 30099715 30099715 A T TBX6 Intron 0.62 TCGA-37-4130-01 16 30495267 30495267 G T ITGAL Missense_Mutation p.R281L 0.33 deleterious(0) probably_damaging(1) TCGA-37-4130-01 16 30740303 30740303 A C SRCAP Missense_Mutation p.K1892T 0.14 possibly_damaging(0.685) TCGA-37-4130-01 16 31374490 31374490 G T ITGAX Missense_Mutation p.R502I 0.31 deleterious(0.05) benign(0) TCGA-37-4130-01 16 31391098 31391098 G T ITGAX Missense_Mutation p.R963S 0.34 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 16 31927285 31927285 G C ZNF267 Missense_Mutation p.G572A 0.71 deleterious(0.02) probably_damaging(0.996) TCGA-37-4130-01 16 3777894 3777894 G A CREBBP Missense_Mutation p.P2385L 0.56 unknown(0) TCGA-37-4130-01 16 49672139 49672139 G T ZNF423 Missense_Mutation p.N308K 0.29 tolerated(0.98) benign(0.007) TCGA-37-4130-01 16 51174932 51174932 C A SALL1 Missense_Mutation p.V401F 0.26 deleterious(0) benign(0.091) TCGA-37-4130-01 16 55361291 55361291 G T IRX6 Silent p.R129R 0.20 TCGA-37-4130-01 16 55539378 55539378 C G MMP2 3'UTR 0.27 TCGA-37-4130-01 16 57007257 57007257 C T CETP Silent p.Y255Y 0.27 TCGA-37-4130-01 16 57494578 57494578 G C COQ9 3'UTR 0.25 TCGA-37-4130-01 16 57559915 57559915 A T CCDC102A Missense_Mutation p.L237Q 0.32 tolerated(0.17) benign(0.159) TCGA-37-4130-01 16 57600546 57600546 G A GPR114 Silent p.E194E 0.25 TCGA-37-4130-01 16 58324886 58324886 G T PRSS54 Missense_Mutation p.S80R 0.14 deleterious(0) probably_damaging(0.996) TCGA-37-4130-01 16 65005960 65005960 C A CDH11 Silent p.R466R 0.23 TCGA-37-4130-01 16 66887420 66887420 C A CA7 3'UTR 0.25 TCGA-37-4130-01 16 67070657 67070657 A T CBFB Missense_Mutation p.K94M 0.31 deleterious(0.03) probably_damaging(0.966) TCGA-37-4130-01 16 68057192 68057192 G T DDX28 5'UTR 0.75 TCGA-37-4130-01 16 69997599 69997599 G T CLEC18A 3'UTR 0.29 TCGA-37-4130-01 16 70172835 70172835 C G PDPR Silent p.P408P 0.10 TCGA-37-4130-01 16 70916570 70916570 G T HYDIN Missense_Mutation p.S3403Y 0.22 probably_damaging(0.919) TCGA-37-4130-01 16 71570932 71570932 C A CHST4 Silent p.R118R 0.30 TCGA-37-4130-01 16 76486405 76486405 G T CNTNAP4 Nonsense_Mutation p.G285* 0.32 TCGA-37-4130-01 16 84230322 84230322 G A ADAD2 Silent p.R614R 0.28 TCGA-37-4130-01 16 85838724 85838724 G T COX4I1 Intron 0.22 TCGA-37-4130-01 16 86612712 86612712 G T FOXL1 Missense_Mutation p.R128L 0.35 deleterious(0) probably_damaging(0.924) TCGA-37-4130-01 16 89371660 89371660 C A ANKRD11 Silent p.L60L 0.27 TCGA-37-4130-01 16 90030698 90030698 C T DEF8 Missense_Mutation p.H436Y 0.24 deleterious(0) probably_damaging(1) TCGA-37-4130-01 17 10243663 10243663 G A MYH13 Silent p.T650T 0.13 TCGA-37-4130-01 17 10300035 10300035 C A MYH8 Missense_Mutation p.V1455F 0.10 deleterious(0.02) possibly_damaging(0.848) TCGA-37-4130-01 17 10302183 10302183 C G MYH8 Missense_Mutation p.D1295H 0.14 deleterious(0) possibly_damaging(0.776) TCGA-37-4130-01 17 10408379 10408379 C A MYH1 Missense_Mutation p.E813D 0.19 tolerated(1) benign(0.002) TCGA-37-4130-01 17 10416978 10416978 G C MYH1 Missense_Mutation p.T257S 0.31 tolerated(0.18) benign(0.017) TCGA-37-4130-01 17 10426406 10426406 C A MYH2 Splice_Site p.X1891_splice 0.10 TCGA-37-4130-01 17 10609764 10609764 A T ADPRM Missense_Mutation p.E204V 0.36 deleterious(0) possibly_damaging(0.807) TCGA-37-4130-01 17 11532795 11532795 G T DNAH9 Missense_Mutation p.R471I 0.11 possibly_damaging(0.781) TCGA-37-4130-01 17 11656184 11656184 C A DNAH9 Missense_Mutation p.N2215K 0.10 benign(0.2) TCGA-37-4130-01 17 11687725 11687725 C A DNAH9 Missense_Mutation p.L2644M 0.15 possibly_damaging(0.537) TCGA-37-4130-01 17 11725854 11725854 T A DNAH9 Missense_Mutation p.W2984R 0.44 probably_damaging(0.995) TCGA-37-4130-01 17 12655979 12655979 C A MYOCD Silent p.I458I 0.43 TCGA-37-4130-01 17 13399625 13399625 C T HS3ST3A1 Silent p.R370R 0.25 TCGA-37-4130-01 17 13399965 13399965 A T HS3ST3A1 Missense_Mutation p.L257Q 0.36 deleterious(0) benign(0.014) TCGA-37-4130-01 17 16041472 16041472 C A NCOR1 Missense_Mutation p.K469N 0.36 probably_damaging(0.988) TCGA-37-4130-01 17 18630996 18630996 G T TRIM16L Missense_Mutation p.R42S 0.13 deleterious(0.03) benign(0.128) TCGA-37-4130-01 17 19283165 19283165 G A MAPK7 Silent p.R101R 0.25 TCGA-37-4130-01 17 1968450 1968450 T G SMG6 Splice_Site p.X1350_splice 0.10 TCGA-37-4130-01 17 21319190 21319190 C A KCNJ12 Missense_Mutation p.A179D 0.08 deleterious(0) possibly_damaging(0.903) TCGA-37-4130-01 17 21825514 21825514 A T FAM27L RNA 0.14 TCGA-37-4130-01 17 32964890 32964890 G T TMEM132E Missense_Mutation p.G865V 0.35 tolerated(0.08) possibly_damaging(0.474) TCGA-37-4130-01 17 3324714 3324714 G A OR3A3 Missense_Mutation p.V285I 0.09 tolerated(0.48) benign(0.029) TCGA-37-4130-01 17 33475289 33475289 G T UNC45B Nonsense_Mutation p.E3* 0.20 TCGA-37-4130-01 17 33476027 33476027 A T UNC45B Missense_Mutation p.R68S 0.20 tolerated(0.09) benign(0.065) TCGA-37-4130-01 17 33680047 33680047 C A SLFN11 Silent p.G678G 0.23 TCGA-37-4130-01 17 33690679 33690679 C T SLFN11 Missense_Mutation p.A50T 0.25 tolerated(0.22) possibly_damaging(0.732) TCGA-37-4130-01 17 33954495 33954495 C G AP2B1 Missense_Mutation p.R344G 0.20 deleterious(0) benign(0.125) TCGA-37-4130-01 17 36486183 36486183 G T GPR179 Missense_Mutation p.A1090E 0.25 deleterious(0) probably_damaging(1) TCGA-37-4130-01 17 36909485 36909485 G C PSMB3 Missense_Mutation p.G29A 0.14 deleterious(0) possibly_damaging(0.897) TCGA-37-4130-01 17 3779600 3779600 C T CAMKK1 Missense_Mutation p.A343T 0.57 deleterious(0.03) probably_damaging(0.995) TCGA-37-4130-01 17 38024810 38024810 C A ZPBP2 Missense_Mutation p.P21T 0.27 deleterious(0.05) benign(0.048) TCGA-37-4130-01 17 39032652 39032652 G T KRT20 Silent p.V412V 0.20 TCGA-37-4130-01 17 39340696 39340696 G T KRTAP4-1 Nonsense_Mutation p.C137* 0.25 TCGA-37-4130-01 17 39580278 39580278 C A KRT37 Intron 0.21 TCGA-37-4130-01 17 40342899 40342899 G T GHDC Silent p.R369R 0.31 TCGA-37-4130-01 17 42266488 42266488 T C TMUB2 Missense_Mutation p.L45P 0.11 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 17 42852784 42852784 G C ADAM11 Missense_Mutation p.G448A 0.35 deleterious(0) probably_damaging(0.992) TCGA-37-4130-01 17 43906649 43906649 G A CRHR1 Silent p.V132V 0.24 TCGA-37-4130-01 17 44109493 44109493 G A KANSL1 Missense_Mutation p.P1004S 0.20 tolerated(0.1) possibly_damaging(0.543) TCGA-37-4130-01 17 46654114 46654114 G T HOXB4 Silent p.G242G 0.22 TCGA-37-4130-01 17 46862298 46862298 A T TTLL6 Missense_Mutation p.F676Y 0.27 tolerated_low_confidence(0.09) possibly_damaging(0.628) TCGA-37-4130-01 17 4689504 4689504 G T VMO1 Silent p.A48A 0.14 TCGA-37-4130-01 17 48541599 48541599 G A ACSF2 Missense_Mutation p.A387T 0.26 deleterious(0.01) benign(0.062) TCGA-37-4130-01 17 51902251 51902251 G T KIF2B Missense_Mutation p.W619C 0.30 deleterious(0.03) benign(0.007) TCGA-37-4130-01 17 53852192 53852192 C T PCTP Missense_Mutation p.P184L 0.27 deleterious(0.04) probably_damaging(0.995) TCGA-37-4130-01 17 54535340 54535340 G T ANKFN1 Missense_Mutation p.Q522H 0.32 deleterious(0) probably_damaging(0.996) TCGA-37-4130-01 17 56676828 56676828 G A TEX14 Silent p.Y632Y 0.30 TCGA-37-4130-01 17 56700337 56700337 T C TEX14 Silent p.A96A 0.19 TCGA-37-4130-01 17 58740711 58740711 A C PPM1D Missense_Mutation p.E539A 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.872) TCGA-37-4130-01 17 58967074 58967074 G T BCAS3 Missense_Mutation p.G227V 0.23 deleterious(0) probably_damaging(1) TCGA-37-4130-01 17 60088066 60088066 T G MED13 Silent p.V604V 0.24 TCGA-37-4130-01 17 61958122 61958122 C A GH2 Missense_Mutation p.A156S 0.30 tolerated(0.43) benign(0.388) TCGA-37-4130-01 17 61987664 61987664 G T CSHL1 Missense_Mutation p.S110Y 0.30 deleterious(0) probably_damaging(0.997) TCGA-37-4130-01 17 61988471 61988471 G T CSHL1 Intron 0.34 TCGA-37-4130-01 17 62007433 62007433 C A CD79B Splice_Site p.X145_splice 0.25 TCGA-37-4130-01 17 62018117 62018117 C A SCN4A 3'UTR 0.33 TCGA-37-4130-01 17 62028962 62028962 T A SCN4A Missense_Mutation p.H892L 0.15 tolerated(0.74) benign(0.002) TCGA-37-4130-01 17 63052637 63052637 G C GNA13 Silent p.A25A 0.30 TCGA-37-4130-01 17 63554098 63554098 C - AXIN2 Frame_Shift_Del p.G214Dfs*5 0.33 TCGA-37-4130-01 17 6364752 6364752 C G PITPNM3 Missense_Mutation p.G811R 0.52 deleterious(0.02) probably_damaging(1) TCGA-37-4130-01 17 6493232 6493232 C A KIAA0753 Missense_Mutation p.G885C 0.53 tolerated(0.26) probably_damaging(1) TCGA-37-4130-01 17 65163598 65163598 C A HELZ Missense_Mutation p.R582L 0.26 tolerated(0.17) benign(0.008) TCGA-37-4130-01 17 66878815 66878815 T A ABCA8 Silent p.P1211P 0.25 TCGA-37-4130-01 17 68129288 68129288 G T KCNJ16 Nonsense_Mutation p.E354* 0.31 TCGA-37-4130-01 17 6930845 6930845 C A BCL6B Missense_Mutation p.F449L 0.41 deleterious(0) probably_damaging(0.993) TCGA-37-4130-01 17 72832433 72832433 C T TMEM104 Silent p.S366S 0.25 TCGA-37-4130-01 17 72862351 72862351 C A FDXR Missense_Mutation p.D180Y 0.33 deleterious(0) possibly_damaging(0.694) TCGA-37-4130-01 17 72875702 72875702 C G FADS6 Silent p.L246L 0.20 TCGA-37-4130-01 17 72877299 72877299 G T FADS6 Missense_Mutation p.L209M 0.50 tolerated(0.33) benign(0.1) TCGA-37-4130-01 17 73485658 73485658 C T KIAA0195 Missense_Mutation p.A290V 0.34 tolerated(1) benign(0.001) TCGA-37-4130-01 17 73945801 73945801 G C ACOX1 Silent p.A492A 0.16 TCGA-37-4130-01 17 74392796 74392796 C A UBE2O Missense_Mutation p.W741L 0.24 deleterious(0) probably_damaging(0.986) TCGA-37-4130-01 17 7578203 7578203 C A TP53 Missense_Mutation p.V216L 0.16 deleterious(0) probably_damaging(0.998) TCGA-37-4130-01 17 7578271 7578271 T C TP53 Missense_Mutation p.H193R 0.43 deleterious(0) probably_damaging(1) TCGA-37-4130-01 17 76116734 76116734 C T TMC6 Missense_Mutation p.R572K 0.04 deleterious(0.02) probably_damaging(0.999) TCGA-37-4130-01 17 77040197 77040197 T C C1QTNF1 Silent p.H49H 0.38 TCGA-37-4130-01 17 77705136 77705136 C A ENPP7 Missense_Mutation p.H79N 0.26 deleterious(0) probably_damaging(0.995) TCGA-37-4130-01 17 78328161 78328161 G C RNF213 Intron 0.15 TCGA-37-4130-01 17 78447057 78447057 G T NPTX1 Missense_Mutation p.N280K 0.27 deleterious(0) probably_damaging(0.964) TCGA-37-4130-01 17 78866595 78866595 A G RPTOR Missense_Mutation p.Y723C 0.32 tolerated(0.09) probably_damaging(0.964) TCGA-37-4130-01 17 79657227 79657227 A T HGS Missense_Mutation p.E144V 0.25 tolerated(0.21) possibly_damaging(0.804) TCGA-37-4130-01 17 8017809 8017809 T A ALOXE3 Missense_Mutation p.I357F 0.15 tolerated(0.72) benign(0.312) TCGA-37-4130-01 17 8789896 8789896 G T PIK3R5 Silent p.A644A 0.15 TCGA-37-4130-01 18 10696469 10696469 A T PIEZO2 Missense_Mutation p.V2186E 0.61 deleterious(0) possibly_damaging(0.639) TCGA-37-4130-01 18 10696471 10696471 G T PIEZO2 Silent p.A2185A 0.60 TCGA-37-4130-01 18 14852127 14852127 A T ANKRD30B Missense_Mutation p.K1276M 0.48 deleterious(0.01) probably_damaging(0.993) TCGA-37-4130-01 18 21485580 21485580 T C LAMA3 Missense_Mutation p.L2237P 0.30 probably_damaging(0.999) TCGA-37-4130-01 18 21487626 21487626 G T LAMA3 Missense_Mutation p.Q2277H 0.26 benign(0.027) TCGA-37-4130-01 18 21492781 21492781 G T LAMA3 Missense_Mutation p.R2422M 0.39 probably_damaging(0.996) TCGA-37-4130-01 18 23612389 23612389 G C SS18 Missense_Mutation p.Q402E 0.05 deleterious_low_confidence(0.01) unknown(0) TCGA-37-4130-01 18 28968914 28968914 A C DSG4 Silent p.I150I 0.45 TCGA-37-4130-01 18 29055775 29055775 C A DSG3 Missense_Mutation p.P851H 0.43 deleterious(0) probably_damaging(0.983) TCGA-37-4130-01 18 30350288 30350288 C T KLHL14 Silent p.Q89Q 0.67 TCGA-37-4130-01 18 321669 321669 C A COLEC12 Missense_Mutation p.R734S 0.53 tolerated_low_confidence(0.88) unknown(0) TCGA-37-4130-01 18 33780235 33780235 G T MOCOS Missense_Mutation p.A297S 0.35 tolerated(0.06) possibly_damaging(0.461) TCGA-37-4130-01 18 43534584 43534584 T C EPG5 Missense_Mutation p.I262V 0.51 tolerated(0.58) benign(0) TCGA-37-4130-01 18 59712943 59712943 C G PIGN 3'UTR 0.45 TCGA-37-4130-01 18 64239311 64239311 C T CDH19 Missense_Mutation p.G44D 0.16 deleterious(0.02) possibly_damaging(0.86) TCGA-37-4130-01 18 66369001 66369001 C A TMX3 Missense_Mutation p.G98C 0.43 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 18 6977811 6977811 G T LAMA1 Missense_Mutation p.P2087H 0.69 deleterious(0) probably_damaging(0.996) TCGA-37-4130-01 18 70209060 70209060 G A CBLN2 Silent p.T112T 0.48 TCGA-37-4130-01 18 7040151 7040151 G - LAMA1 Frame_Shift_Del p.P449Rfs*44 0.54 TCGA-37-4130-01 18 72226596 72226596 C G CNDP1 Silent p.V64V 0.18 TCGA-37-4130-01 18 72776271 72776271 A T ZNF407 Missense_Mutation p.E2198D 0.25 tolerated(0.16) benign(0.007) TCGA-37-4130-01 18 74631780 74631780 G T ZNF236 Missense_Mutation p.R1106L 0.40 deleterious(0.03) probably_damaging(0.959) TCGA-37-4130-01 19 10478763 10478763 C G TYK2 Missense_Mutation p.D145H 0.50 deleterious(0) probably_damaging(0.996) TCGA-37-4130-01 19 12490706 12490706 C A CTD-3105H18.14 3'UTR 0.52 TCGA-37-4130-01 19 12807445 12807445 C A FBXW9 5'UTR 0.57 TCGA-37-4130-01 19 12989216 12989216 T G DNASE2 Missense_Mutation p.K230T 0.42 deleterious(0) probably_damaging(0.973) TCGA-37-4130-01 19 1488245 1488245 C A PCSK4 Missense_Mutation p.R110L 0.24 deleterious(0) possibly_damaging(0.872) TCGA-37-4130-01 19 17785501 17785501 C A UNC13A Silent p.R39R 0.27 TCGA-37-4130-01 19 1825877 1825877 C A REXO1 Missense_Mutation p.Q659H 0.49 deleterious(0.02) probably_damaging(0.997) TCGA-37-4130-01 19 18546168 18546168 G T ISYNA1 Silent p.L460L 0.42 TCGA-37-4130-01 19 19043788 19043788 C T HOMER3 Missense_Mutation p.A160T 0.47 tolerated(0.05) possibly_damaging(0.844) TCGA-37-4130-01 19 20044574 20044574 G T ZNF93 Silent p.S270S 0.49 TCGA-37-4130-01 19 20828175 20828175 G T ZNF626 Intron 0.45 TCGA-37-4130-01 19 22363901 22363901 A G ZNF676 Silent p.F206F 0.50 TCGA-37-4130-01 19 2405378 2405378 G T TMPRSS9 Missense_Mutation p.G192V 0.48 deleterious(0) probably_damaging(1) TCGA-37-4130-01 19 287616 287616 C A PPAP2C Missense_Mutation p.D135Y 0.50 deleterious(0) probably_damaging(1) TCGA-37-4130-01 19 2878407 2878407 G A ZNF556 3'UTR 0.57 TCGA-37-4130-01 19 30935365 30935365 C A ZNF536 Missense_Mutation p.P299H 0.21 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 19 30936589 30936589 C A ZNF536 Missense_Mutation p.T707N 0.22 deleterious(0.01) benign(0.312) TCGA-37-4130-01 19 31767587 31767587 C A TSHZ3 Missense_Mutation p.G1038W 0.27 deleterious(0) probably_damaging(1) TCGA-37-4130-01 19 35989788 35989788 T A DMKN Silent p.S457S 0.35 TCGA-37-4130-01 19 3600414 3600414 G A TBXA2R Silent p.T73T 0.36 TCGA-37-4130-01 19 36041737 36041737 C T ATP4A Silent p.G1026G 0.42 TCGA-37-4130-01 19 36275150 36275150 G T ARHGAP33 Nonsense_Mutation p.E500* 0.25 TCGA-37-4130-01 19 36278817 36278817 C T ARHGAP33 Missense_Mutation p.A956V 0.28 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-37-4130-01 19 37880791 37880791 G T ZNF527 3'UTR 0.22 TCGA-37-4130-01 19 38893795 38893795 T C FAM98C Translation_Start_Site p.M1? 0.53 deleterious_low_confidence(0) possibly_damaging(0.775) TCGA-37-4130-01 19 38943491 38943491 G T RYR1 Missense_Mutation p.G426V 0.40 benign(0.053) TCGA-37-4130-01 19 38949882 38949882 C A RYR1 Missense_Mutation p.S755Y 0.23 probably_damaging(1) TCGA-37-4130-01 19 38987582 38987582 G T RYR1 Missense_Mutation p.Q2293H 0.28 benign(0.279) TCGA-37-4130-01 19 38995655 38995655 G T RYR1 Silent p.P2748P 0.34 TCGA-37-4130-01 19 39234598 39234598 C A CAPN12 Missense_Mutation p.A70S 0.38 deleterious(0.01) possibly_damaging(0.737) TCGA-37-4130-01 19 39338005 39338005 C A HNRNPL Missense_Mutation p.V113L 0.16 deleterious(0.02) benign(0.197) TCGA-37-4130-01 19 39389021 39389021 G A SIRT2 Nonsense_Mutation p.Q21* 0.12 TCGA-37-4130-01 19 39412705 39412705 G A SARS2 Missense_Mutation p.P136L 0.12 tolerated(0.14) benign(0.047) TCGA-37-4130-01 19 39412706 39412706 G A SARS2 Missense_Mutation p.P136S 0.12 tolerated(0.23) benign(0.344) TCGA-37-4130-01 19 39991270 39991270 A G DLL3 Missense_Mutation p.I123V 0.08 tolerated(0.06) benign(0.002) TCGA-37-4130-01 19 40407983 40407983 C A FCGBP Missense_Mutation p.V1580L 0.37 unknown(0) TCGA-37-4130-01 19 40541779 40541779 G A ZNF780B Silent p.G329G 0.15 TCGA-37-4130-01 19 40722032 40722032 G C TTC9B 3'UTR 0.34 TCGA-37-4130-01 19 40827974 40827974 C A C19orf47 Missense_Mutation p.V362L 0.26 tolerated_low_confidence(0.7) benign(0.006) TCGA-37-4130-01 19 41133075 41133075 G T LTBP4 Missense_Mutation p.R1460L 0.47 tolerated(0.16) probably_damaging(0.918) TCGA-37-4130-01 19 4249285 4249285 C T CCDC94 Missense_Mutation p.R29W 0.34 deleterious(0) benign(0.4) TCGA-37-4130-01 19 42824472 42824472 C A TMEM145 Missense_Mutation p.F359L 0.38 deleterious(0.04) probably_damaging(0.987) TCGA-37-4130-01 19 42875513 42875513 A G MEGF8 Missense_Mutation p.N2316S 0.38 deleterious(0.01) probably_damaging(0.966) TCGA-37-4130-01 19 43262381 43262381 G T PSG8 Missense_Mutation p.A161D 0.28 tolerated(0.27) benign(0.005) TCGA-37-4130-01 19 43528933 43528933 G T PSG11 Silent p.R114R 0.38 TCGA-37-4130-01 19 43866344 43866344 C G CD177 3'UTR 0.41 TCGA-37-4130-01 19 43920252 43920252 G T TEX101 Silent p.S40S 0.13 TCGA-37-4130-01 19 44536751 44536751 G T ZNF222 Missense_Mutation p.M348I 0.38 deleterious(0) benign(0) TCGA-37-4130-01 19 44934494 44934494 C A ZNF229 Missense_Mutation p.E154D 0.11 tolerated(0.09) benign(0.002) TCGA-37-4130-01 19 46119799 46119799 C T EML2 Missense_Mutation p.V678M 0.38 deleterious(0) possibly_damaging(0.898) TCGA-37-4130-01 19 46328429 46328429 C G SYMPK Silent p.P830P 0.42 TCGA-37-4130-01 19 46652279 46652279 C A IGFL2 Missense_Mutation p.P13T 0.32 tolerated(0.09) benign(0.001) TCGA-37-4130-01 19 46974146 46974146 T A PNMAL1 Silent p.P49P 0.39 TCGA-37-4130-01 19 47774709 47774709 C T CCDC9 Missense_Mutation p.P457L 0.13 deleterious(0) unknown(0) TCGA-37-4130-01 19 47856214 47856215 - T DHX34 5'UTR 0.54 TCGA-37-4130-01 19 49573288 49573288 A G KCNA7 3'UTR 0.34 TCGA-37-4130-01 19 49641557 49641557 G C PPFIA3 Missense_Mutation p.R650P 0.25 deleterious(0.04) possibly_damaging(0.475) TCGA-37-4130-01 19 50474489 50474489 A T SIGLEC16 RNA 0.33 TCGA-37-4130-01 19 51133185 51133185 G T SYT3 Silent p.A306A 0.36 TCGA-37-4130-01 19 51192567 51192567 G A SHANK1 Intron 0.21 TCGA-37-4130-01 19 51192568 51192568 G T SHANK1 Intron 0.20 TCGA-37-4130-01 19 51274646 51274646 C A GPR32 Missense_Mutation p.S263R 0.27 deleterious(0.04) possibly_damaging(0.837) TCGA-37-4130-01 19 51298159 51298159 C A ACPT Missense_Mutation p.P368Q 0.12 deleterious(0.03) benign(0.112) TCGA-37-4130-01 19 51381821 51381821 C A KLK2 3'UTR 0.42 TCGA-37-4130-01 19 51983881 51983881 G T CEACAM18 Missense_Mutation p.R177L 0.30 tolerated(0.09) benign(0.339) TCGA-37-4130-01 19 52249957 52249957 C A FPR1 Silent p.L97L 0.46 TCGA-37-4130-01 19 52272999 52272999 C A FPR2 3'UTR 0.18 TCGA-37-4130-01 19 52659426 52659426 C A ZNF836 Missense_Mutation p.G504C 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-37-4130-01 19 52876401 52876401 C T ZNF880 Missense_Mutation p.P17L 0.14 deleterious(0) benign(0.001) TCGA-37-4130-01 19 52954815 52954815 G A ZNF578 5'Flank 0.29 TCGA-37-4130-01 19 53209601 53209601 C A ZNF611 Missense_Mutation p.S236I 0.19 deleterious(0.01) possibly_damaging(0.649) TCGA-37-4130-01 19 53343221 53343221 C A ZNF468 3'UTR 0.14 TCGA-37-4130-01 19 53625918 53625918 A T ZNF415 Intron 0.40 TCGA-37-4130-01 19 54140080 54140080 G T DPRX Missense_Mutation p.K138N 0.14 deleterious(0.04) benign(0.127) TCGA-37-4130-01 19 54297233 54297233 G T NLRP12 3'UTR 0.47 TCGA-37-4130-01 19 54299134 54299134 C A NLRP12 Missense_Mutation p.G1026V 0.15 deleterious(0.02) unknown(0) TCGA-37-4130-01 19 54314180 54314180 C T NLRP12 Missense_Mutation p.D245N 0.11 deleterious(0) probably_damaging(0.974) TCGA-37-4130-01 19 54849355 54849355 G C LILRA4 Missense_Mutation p.H169Q 0.32 tolerated(1) benign(0.004) TCGA-37-4130-01 19 55045003 55045003 A T KIR3DX1 Silent p.L41L 0.39 TCGA-37-4130-01 19 55085775 55085775 C A LILRA2 Silent p.L26L 0.28 TCGA-37-4130-01 19 55086735 55086735 A G LILRA2 Missense_Mutation p.K223R 0.14 deleterious(0.02) probably_damaging(0.996) TCGA-37-4130-01 19 55106672 55106672 C T LILRA1 Silent p.L156L 0.13 TCGA-37-4130-01 19 55144110 55144110 C T LILRB1 Missense_Mutation p.P286L 0.45 deleterious(0.04) benign(0.049) TCGA-37-4130-01 19 55146584 55146584 G T LILRB1 Missense_Mutation p.A506S 0.40 tolerated(0.17) benign(0.059) TCGA-37-4130-01 19 55247466 55247466 T G KIR3DL3 Missense_Mutation p.V379G 0.58 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 19 55378200 55378200 C A KIR3DL2 3'UTR 0.10 TCGA-37-4130-01 19 55450971 55450971 C A NLRP7 Missense_Mutation p.A406S 0.15 tolerated(0.54) benign(0.031) TCGA-37-4130-01 19 55539105 55539105 G T GP6 Missense_Mutation p.P151T 0.44 tolerated_low_confidence(0.12) benign(0.008) TCGA-37-4130-01 19 57035754 57035754 A C ZNF471 Silent p.A106A 0.13 TCGA-37-4130-01 19 57293399 57293399 G A ZIM2 Missense_Mutation p.L190F 0.14 deleterious(0.02) benign(0.243) TCGA-37-4130-01 19 57646670 57646670 G A ZIM3 Silent p.S345S 0.37 TCGA-37-4130-01 19 57647106 57647106 C A ZIM3 Missense_Mutation p.C200F 0.41 deleterious(0) possibly_damaging(0.875) TCGA-37-4130-01 19 57765609 57765609 C A ZNF805 Missense_Mutation p.F474L 0.17 tolerated(0.31) possibly_damaging(0.816) TCGA-37-4130-01 19 5778510 5778510 C A CATSPERD Silent p.A740A 0.55 TCGA-37-4130-01 19 57803407 57803407 G T ZNF460 Missense_Mutation p.A500S 0.09 deleterious(0.03) benign(0.041) TCGA-37-4130-01 19 57835177 57835177 G T ZNF543 Splice_Site p.X49_splice 0.13 TCGA-37-4130-01 19 57901448 57901448 G T AC003002.6 5'UTR 0.36 TCGA-37-4130-01 19 58216324 58216324 C T ZNF154 Silent p.V19V 0.15 TCGA-37-4130-01 19 58578530 58578530 C A ZNF135 Missense_Mutation p.S250R 0.41 tolerated(0.33) probably_damaging(0.966) TCGA-37-4130-01 19 58863903 58863903 C T A1BG Nonsense_Mutation p.W120* 0.19 TCGA-37-4130-01 19 5978145 5978145 G T RANBP3 5'UTR 0.65 TCGA-37-4130-01 19 7569246 7569246 C A C19orf45 Missense_Mutation p.T244K 0.50 tolerated(0.1) benign(0.033) TCGA-37-4130-01 19 7977201 7977201 G C MAP2K7 Missense_Mutation p.R382P 0.64 deleterious(0.02) possibly_damaging(0.663) TCGA-37-4130-01 19 8954009 8954009 C T MBD3L1 3'Flank 0.55 TCGA-37-4130-01 19 9057472 9057472 A C MUC16 Missense_Mutation p.L9992V 0.55 unknown(0) TCGA-37-4130-01 19 9061442 9061442 C T MUC16 Silent p.V8668V 0.45 TCGA-37-4130-01 19 9068125 9068125 C G MUC16 Missense_Mutation p.E6441Q 0.55 unknown(0) TCGA-37-4130-01 19 9958847 9958847 G T PIN1 Intron 0.52 TCGA-37-4130-01 1 100661868 100661868 G A DBT Silent p.S464S 0.43 TCGA-37-4130-01 1 101203834 101203834 G T VCAM1 Missense_Mutation p.V739L 0.09 deleterious(0) probably_damaging(0.952) TCGA-37-4130-01 1 103474021 103474021 G T COL11A1 Missense_Mutation p.Q561K 0.52 unknown(0) TCGA-37-4130-01 1 110737418 110737418 C A SLC6A17 Intron 0.22 TCGA-37-4130-01 1 113264875 113264875 G T FAM19A3 Missense_Mutation p.R7L 0.43 tolerated_low_confidence(0.12) benign(0.007) TCGA-37-4130-01 1 117603109 117603109 G T TTF2 Missense_Mutation p.D21Y 0.08 deleterious(0) probably_damaging(0.991) TCGA-37-4130-01 1 120056698 120056698 C A HSD3B1 Silent p.A184A 0.12 TCGA-37-4130-01 1 120277956 120277956 G C PHGDH Missense_Mutation p.G228R 0.42 deleterious(0) probably_damaging(0.988) TCGA-37-4130-01 1 120463021 120463021 C T NOTCH2 Splice_Site p.X1771_splice 0.50 TCGA-37-4130-01 1 12820927 12820927 A T C1orf158 3'UTR 0.14 TCGA-37-4130-01 1 12920044 12920044 G C PRAMEF2 Missense_Mutation p.V262L 0.22 tolerated(0.07) benign(0.002) TCGA-37-4130-01 1 143767709 143767709 C A PPIAL4G Missense_Mutation p.R47L 0.06 deleterious_low_confidence(0) benign(0.005) TCGA-37-4130-01 1 144882559 144882559 C A PDE4DIP Missense_Mutation p.V1154F 0.24 tolerated(0.71) possibly_damaging(0.603) TCGA-37-4130-01 1 146767284 146767284 G T CHD1L 3'UTR 0.14 TCGA-37-4130-01 1 151089982 151089982 A C GABPB2 Missense_Mutation p.E346A 0.11 tolerated(0.25) benign(0.005) TCGA-37-4130-01 1 152188059 152188059 G T HRNR Missense_Mutation p.H2016N 0.39 unknown(0) TCGA-37-4130-01 1 152277101 152277101 T C FLG Missense_Mutation p.S3421G 0.13 unknown(0) TCGA-37-4130-01 1 152286940 152286940 G C FLG Missense_Mutation p.S141C 0.43 probably_damaging(0.987) TCGA-37-4130-01 1 152329244 152329244 G T FLG2 Missense_Mutation p.Q340K 0.12 unknown(0) TCGA-37-4130-01 1 152382083 152382083 C T CRNN Missense_Mutation p.S492N 0.45 deleterious(0.02) benign(0.296) TCGA-37-4130-01 1 152733479 152733479 C T KPRP Missense_Mutation p.P472L 0.45 deleterious(0) probably_damaging(0.958) TCGA-37-4130-01 1 153012839 153012839 G C SPRR2D Intron 0.13 TCGA-37-4130-01 1 153043227 153043227 G - SPRR2B Frame_Shift_Del p.P30Rfs*28 0.37 TCGA-37-4130-01 1 153066139 153066139 G - SPRR2E Frame_Shift_Del p.P30Rfs*28 0.09 TCGA-37-4130-01 1 153270519 153270519 C A PGLYRP3 Silent p.L313L 0.15 TCGA-37-4130-01 1 153659739 153659739 G T NPR1 Missense_Mutation p.V667L 0.45 deleterious(0.04) probably_damaging(1) TCGA-37-4130-01 1 153912197 153912197 C A DENND4B Nonsense_Mutation p.E563* 0.50 TCGA-37-4130-01 1 154034089 154034089 C A NUP210L Silent p.V872V 0.09 TCGA-37-4130-01 1 154209532 154209532 C T UBAP2L Missense_Mutation p.A208V 0.09 deleterious(0.01) unknown(0) TCGA-37-4130-01 1 154319093 154319093 C T ATP8B2 Intron 0.45 TCGA-37-4130-01 1 155185555 155185555 A T MTX1 3'Flank 0.09 TCGA-37-4130-01 1 156536190 156536190 G A IQGAP3 Missense_Mutation p.R92W 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-37-4130-01 1 15769040 15769040 C A CTRC Missense_Mutation p.H110N 0.31 deleterious(0.03) probably_damaging(1) TCGA-37-4130-01 1 158064660 158064660 G T KIRREL Missense_Mutation p.G675V 0.44 tolerated(0.23) benign(0.014) TCGA-37-4130-01 1 158152820 158152820 C T CD1D Silent p.L254L 0.16 TCGA-37-4130-01 1 158152874 158152874 G T CD1D Missense_Mutation p.G272W 0.18 deleterious(0.02) benign(0.213) TCGA-37-4130-01 1 158326291 158326291 G T CD1E Missense_Mutation p.G303V 0.09 tolerated(0.05) possibly_damaging(0.849) TCGA-37-4130-01 1 158368839 158368839 T A OR10T2 Missense_Mutation p.R140W 0.47 deleterious(0.04) possibly_damaging(0.796) TCGA-37-4130-01 1 158435423 158435423 G C OR10K1 Missense_Mutation p.Q24H 0.13 tolerated(0.14) probably_damaging(0.998) TCGA-37-4130-01 1 158595985 158595985 T A SPTA1 Missense_Mutation p.N1954I 0.10 deleterious(0) possibly_damaging(0.78) TCGA-37-4130-01 1 159779357 159779357 G C FCRL6 Missense_Mutation p.G257A 0.09 tolerated(0.24) possibly_damaging(0.78) TCGA-37-4130-01 1 159922080 159922080 G T SLAMF9 Nonsense_Mutation p.C212* 0.11 TCGA-37-4130-01 1 160388934 160388934 G T VANGL2 Missense_Mutation p.G112V 0.15 tolerated(0.06) possibly_damaging(0.691) TCGA-37-4130-01 1 16074166 16074166 C G TMEM82 3'UTR 0.39 TCGA-37-4130-01 1 161559422 161559422 T A RP11-25K21.6 Intron 0.48 TCGA-37-4130-01 1 162313659 162313659 A T NOS1AP Missense_Mutation p.Q163L 0.45 deleterious(0) probably_damaging(0.954) TCGA-37-4130-01 1 16460019 16460019 C A EPHA2 Missense_Mutation p.E607D 0.27 deleterious(0) benign(0.362) TCGA-37-4130-01 1 166927096 166927096 T A ILDR2 Missense_Mutation p.R97W 0.10 deleterious(0.01) probably_damaging(0.99) TCGA-37-4130-01 1 167032946 167032946 G A GPA33 Silent p.I148I 0.47 TCGA-37-4130-01 1 167096078 167096078 C A DUSP27 Silent p.P570P 0.11 TCGA-37-4130-01 1 168274388 168274388 G A TBX19 Silent p.Q290Q 0.50 TCGA-37-4130-01 1 169818727 169818727 G C C1orf112 Silent p.A715A 0.15 TCGA-37-4130-01 1 170967681 170967681 G T MROH9 Intron 0.36 TCGA-37-4130-01 1 171250035 171250035 C A FMO1 Silent p.S246S 0.09 TCGA-37-4130-01 1 172526458 172526458 C T SUCO Missense_Mutation p.P161L 0.14 tolerated_low_confidence(0.1) benign(0.003) TCGA-37-4130-01 1 17548877 17548878 - CATA PADI1 Frame_Shift_Ins p.G64Hfs*11 0.14 TCGA-37-4130-01 1 176015438 176015438 C T RFWD2 Missense_Mutation p.D434N 0.09 deleterious(0) possibly_damaging(0.459) TCGA-37-4130-01 1 176668506 176668506 C A PAPPA2 Missense_Mutation p.P1006Q 0.48 deleterious(0) probably_damaging(0.99) TCGA-37-4130-01 1 177198941 177198941 G T BRINP2 5'UTR 0.47 TCGA-37-4130-01 1 177930059 177930059 C A SEC16B Missense_Mutation p.G268V 0.48 tolerated(0.09) benign(0.049) TCGA-37-4130-01 1 18661452 18661452 C A IGSF21 Silent p.A124A 0.35 TCGA-37-4130-01 1 19029633 19029633 C T PAX7 Missense_Mutation p.T333I 0.12 deleterious(0) possibly_damaging(0.544) TCGA-37-4130-01 1 202403893 202403893 G T PPP1R12B Missense_Mutation p.R417S 0.59 deleterious(0.05) benign(0.11) TCGA-37-4130-01 1 207500127 207500127 T C CD55 Silent p.F203F 0.59 TCGA-37-4130-01 1 209933457 209933457 C G TRAF3IP3 Missense_Mutation p.R25G 0.60 deleterious(0.02) probably_damaging(0.999) TCGA-37-4130-01 1 21054496 21054496 G T SH2D5 Nonsense_Mutation p.C14* 0.50 TCGA-37-4130-01 1 21083706 21083706 C A HP1BP3 Missense_Mutation p.G312C 0.14 deleterious(0) probably_damaging(0.913) TCGA-37-4130-01 1 212151815 212151815 C A INTS7 Missense_Mutation p.R423S 0.59 tolerated(0.52) benign(0.236) TCGA-37-4130-01 1 214542867 214542867 C A PTPN14 Silent p.T1068T 0.25 TCGA-37-4130-01 1 230883368 230883368 G T CAPN9 Silent p.L42L 0.71 TCGA-37-4130-01 1 231344910 231344910 G T TRIM67 Missense_Mutation p.M679I 0.57 tolerated(0.2) benign(0.134) TCGA-37-4130-01 1 23519745 23519745 A T HTR1D Missense_Mutation p.V323D 0.11 deleterious(0) probably_damaging(0.951) TCGA-37-4130-01 1 236727865 236727865 C A HEATR1 Missense_Mutation p.R1511L 0.56 deleterious(0) probably_damaging(0.998) TCGA-37-4130-01 1 236925826 236925826 G T ACTN2 Missense_Mutation p.K864N 0.47 tolerated(0.19) benign(0.034) TCGA-37-4130-01 1 237617741 237617741 C A RYR2 Missense_Mutation p.P448H 0.55 possibly_damaging(0.73) TCGA-37-4130-01 1 237617742 237617742 T C RYR2 Silent p.P448P 0.53 TCGA-37-4130-01 1 237732570 237732570 T G RYR2 Silent p.L1183L 0.64 TCGA-37-4130-01 1 237777734 237777734 T G RYR2 Missense_Mutation p.V1769G 0.58 benign(0.306) TCGA-37-4130-01 1 237948144 237948144 G T RYR2 Missense_Mutation p.D4378Y 0.10 probably_damaging(0.957) TCGA-37-4130-01 1 243589772 243589772 G C SDCCAG8 Missense_Mutation p.D633H 0.59 tolerated(0.07) benign(0.036) TCGA-37-4130-01 1 247587274 247587274 C A NLRP3 Missense_Mutation p.H177N 0.59 deleterious(0.01) possibly_damaging(0.635) TCGA-37-4130-01 1 247587300 247587300 G C NLRP3 Missense_Mutation p.Q185H 0.59 tolerated(0.95) benign(0.001) TCGA-37-4130-01 1 247655042 247655042 G T OR2W5 RNA 0.59 TCGA-37-4130-01 1 247835978 247835978 G T OR13G1 Silent p.A122A 0.43 TCGA-37-4130-01 1 247875596 247875596 C A OR6F1 Silent p.V154V 0.60 TCGA-37-4130-01 1 247921093 247921093 A G OR1C1 Silent p.L206L 0.43 TCGA-37-4130-01 1 248128688 248128688 G C OR2AK2 Missense_Mutation p.G19R 0.51 tolerated(0.35) benign(0.008) TCGA-37-4130-01 1 248128689 248128689 G T OR2AK2 Missense_Mutation p.G19V 0.51 tolerated(0.47) benign(0.432) TCGA-37-4130-01 1 248436276 248436276 G T OR2T33 Missense_Mutation p.P281T 0.49 deleterious(0) probably_damaging(1) TCGA-37-4130-01 1 248525197 248525197 C A OR2T4 Nonsense_Mutation p.Y105* 0.18 TCGA-37-4130-01 1 248525272 248525272 G A OR2T4 Silent p.G130G 0.10 TCGA-37-4130-01 1 24987849 24987849 G T SRRM1 Missense_Mutation p.R482I 0.16 unknown(0) TCGA-37-4130-01 1 26752882 26752882 C A LIN28A Missense_Mutation p.P188Q 0.09 deleterious_low_confidence(0) benign(0.133) TCGA-37-4130-01 1 27691404 27691404 C T MAP3K6 Splice_Site p.X114_splice 0.16 TCGA-37-4130-01 1 2938910 2938910 G T ACTRT2 Silent p.L220L 0.13 TCGA-37-4130-01 1 29475435 29475435 C G SRSF4 Missense_Mutation p.E324D 0.11 deleterious_low_confidence(0.01) unknown(0) TCGA-37-4130-01 1 31740731 31740731 C A SNRNP40 Missense_Mutation p.G303C 0.07 deleterious(0) probably_damaging(1) TCGA-37-4130-01 1 32740362 32740362 G C LCK Missense_Mutation p.V44L 0.12 tolerated(0.47) benign(0.002) TCGA-37-4130-01 1 3334542 3334542 A G PRDM16 Missense_Mutation p.K948E 0.23 deleterious(0.03) possibly_damaging(0.76) TCGA-37-4130-01 1 34174856 34174856 C A CSMD2 Nonsense_Mutation p.E1097* 0.39 TCGA-37-4130-01 1 35223445 35223445 A G GJB5 Missense_Mutation p.I172V 0.47 tolerated(0.27) benign(0.002) TCGA-37-4130-01 1 35251108 35251108 G T GJB3 Missense_Mutation p.G249W 0.51 deleterious(0) possibly_damaging(0.617) TCGA-37-4130-01 1 35579346 35579346 G T ZMYM1 Missense_Mutation p.D639Y 0.51 tolerated(1) benign(0.366) TCGA-37-4130-01 1 36564608 36564608 G T COL8A2 Missense_Mutation p.P225H 0.81 tolerated(0.08) unknown(0) TCGA-37-4130-01 1 38482041 38482041 G A UTP11L Missense_Mutation p.R25Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 1 39878877 39878877 A G KIAA0754 Silent p.T844T 0.11 TCGA-37-4130-01 1 40149659 40149659 G T HPCAL4 Missense_Mutation p.L110M 0.12 deleterious(0.04) probably_damaging(1) TCGA-37-4130-01 1 40313761 40313761 C T TRIT1 Missense_Mutation p.E238K 0.42 tolerated(0.51) benign(0.012) TCGA-37-4130-01 1 42046648 42046648 C A HIVEP3 Missense_Mutation p.G1274V 0.14 probably_damaging(0.918) TCGA-37-4130-01 1 42619163 42619163 C A GUCA2B Silent p.A14A 0.11 TCGA-37-4130-01 1 45101831 45101831 C T RNF220 Nonsense_Mutation p.R375* 0.48 TCGA-37-4130-01 1 45120752 45120752 C G TMEM53 Missense_Mutation p.E105Q 0.17 tolerated(0.38) benign(0.065) TCGA-37-4130-01 1 47407034 47407034 C T CYP4A11 Silent p.L24L 0.11 TCGA-37-4130-01 1 59002230 59002230 C A OMA1 Missense_Mutation p.L228F 0.18 tolerated(1) benign(0.005) TCGA-37-4130-01 1 60520882 60520882 A G C1orf87 Silent p.D112D 0.48 TCGA-37-4130-01 1 65147765 65147765 C T CACHD1 Nonsense_Mutation p.R1137* 0.19 TCGA-37-4130-01 1 67356847 67356847 A G WDR78 Silent p.T211T 0.13 TCGA-37-4130-01 1 67845702 67845702 C A IL12RB2 Missense_Mutation p.P584Q 0.48 deleterious(0.05) possibly_damaging(0.873) TCGA-37-4130-01 1 67861420 67861420 G A IL12RB2 Missense_Mutation p.S746N 0.58 tolerated(0.25) benign(0.027) TCGA-37-4130-01 1 70503896 70503897 CC A LRRC7 Frame_Shift_Del p.P759Tfs*2 0.16 TCGA-37-4130-01 1 71418692 71418692 A T PTGER3 Nonsense_Mutation p.C385* 0.13 TCGA-37-4130-01 1 75065550 75065550 C G C1orf173 Missense_Mutation p.A519P 0.09 deleterious(0.01) probably_damaging(0.977) TCGA-37-4130-01 1 76387913 76387913 G T ASB17 Missense_Mutation p.P178H 0.13 tolerated(0.07) benign(0.129) TCGA-37-4130-01 1 77510149 77510149 C A ST6GALNAC5 Missense_Mutation p.S174R 0.12 probably_damaging(0.951) TCGA-37-4130-01 1 79125001 79125001 A T IFI44 Missense_Mutation p.N282I 0.07 deleterious(0) benign(0.305) TCGA-37-4130-01 1 79383715 79383715 G T ELTD1 Silent p.A494A 0.50 TCGA-37-4130-01 1 82456516 82456516 C G LPHN2 Missense_Mutation p.T1300R 0.11 deleterious_low_confidence(0.04) possibly_damaging(0.786) TCGA-37-4130-01 1 8390536 8390536 C T SLC45A1 Missense_Mutation p.S328L 0.31 tolerated(0.08) benign(0.081) TCGA-37-4130-01 1 84544018 84544018 G C RP11-486G15.2 5'Flank 0.15 TCGA-37-4130-01 1 89271810 89271810 A T PKN2 Intron 0.11 TCGA-37-4130-01 1 89522807 89522807 G T GBP1 Missense_Mutation p.S295R 0.43 deleterious(0.05) probably_damaging(1) TCGA-37-4130-01 1 89726423 89726423 C G GBP5 Missense_Mutation p.R575S 0.09 tolerated(0.16) benign(0.007) TCGA-37-4130-01 1 92442950 92442950 G T BRDT Missense_Mutation p.K323N 0.47 deleterious(0) probably_damaging(1) TCGA-37-4130-01 1 94140400 94140400 G A BCAR3 Silent p.S29S 0.10 TCGA-37-4130-01 1 94668167 94668167 C A ARHGAP29 Missense_Mutation p.G359V 0.46 deleterious(0) probably_damaging(1) TCGA-37-4130-01 1 99771369 99771369 C A LPPR4 Missense_Mutation p.S365R 0.10 deleterious(0.04) benign(0.1) TCGA-37-4130-01 1 99771695 99771695 C A LPPR4 Missense_Mutation p.P474H 0.16 tolerated(0.36) benign(0.004) TCGA-37-4130-01 20 10273588 10273588 T G SNAP25 Intron 0.57 TCGA-37-4130-01 20 13850849 13850849 C A SEL1L2 Missense_Mutation p.G369C 0.64 deleterious(0) probably_damaging(1) TCGA-37-4130-01 20 23064505 23064505 G A CD93 3'UTR 0.61 TCGA-37-4130-01 20 23858169 23858169 G A CST5 Silent p.P106P 0.64 TCGA-37-4130-01 20 26094588 26094588 G T NCOR1P1 RNA 0.19 TCGA-37-4130-01 20 30037839 30037839 C A DEFB123 Silent p.T22T 0.18 TCGA-37-4130-01 20 3559288 3559288 G T ATRN Missense_Mutation p.A805S 0.07 tolerated(1) benign(0.007) TCGA-37-4130-01 20 35731157 35731157 C A MROH8 Missense_Mutation p.R1048M 0.25 tolerated(0.08) benign(0.008) TCGA-37-4130-01 20 40143592 40143592 C A CHD6 Splice_Site p.X185_splice 0.50 TCGA-37-4130-01 20 41100957 41100957 G T PTPRT Missense_Mutation p.P467T 0.48 deleterious(0.04) benign(0.008) TCGA-37-4130-01 20 42695388 42695388 G C TOX2 Missense_Mutation p.E459Q 0.35 deleterious(0.04) benign(0.261) TCGA-37-4130-01 20 43378833 43378833 T A KCNK15 Missense_Mutation p.L116Q 0.11 deleterious(0) probably_damaging(1) TCGA-37-4130-01 20 44682277 44682277 C A SLC12A5 Missense_Mutation p.Q893K 0.54 tolerated(0.05) benign(0.283) TCGA-37-4130-01 20 45607223 45607223 T A EYA2 Intron 0.22 TCGA-37-4130-01 20 4705267 4705267 G T PRND Missense_Mutation p.V24F 0.65 deleterious_low_confidence(0) benign(0.164) TCGA-37-4130-01 20 47267557 47267557 C T PREX1 Missense_Mutation p.V898M 0.56 deleterious(0.05) probably_damaging(0.99) TCGA-37-4130-01 20 48746216 48746216 T A TMEM189-UBE2V1 Silent p.R115R 0.17 TCGA-37-4130-01 20 50768734 50768734 C A ZFP64 Missense_Mutation p.G666V 0.46 deleterious_low_confidence(0.02) benign(0.076) TCGA-37-4130-01 20 51871857 51871857 C A TSHZ2 Missense_Mutation p.H620Q 0.56 tolerated(0.6) benign(0.001) TCGA-37-4130-01 20 54824361 54824361 C A MC3R Missense_Mutation p.S154R 0.52 deleterious(0.05) probably_damaging(1) TCGA-37-4130-01 20 54824529 54824529 G T MC3R Missense_Mutation p.M210I 0.56 deleterious(0.01) probably_damaging(0.997) TCGA-37-4130-01 20 56083663 56083663 C G CTCFL Missense_Mutation p.W558S 0.52 deleterious(0.02) probably_damaging(0.91) TCGA-37-4130-01 20 56139335 56139335 A G PCK1 Missense_Mutation p.T358A 0.20 deleterious(0) probably_damaging(0.96) TCGA-37-4130-01 20 57769257 57769257 G T ZNF831 Missense_Mutation p.E1061D 0.46 tolerated(1) benign(0.001) TCGA-37-4130-01 20 57897467 57897467 G A EDN3 Missense_Mutation p.G195R 0.09 tolerated(0.17) possibly_damaging(0.879) TCGA-37-4130-01 20 58444868 58444868 T C SYCP2 Missense_Mutation p.I1242M 0.57 tolerated(0.3) benign(0.015) TCGA-37-4130-01 20 58467406 58467406 C A SYCP2 Missense_Mutation p.G668V 0.61 tolerated(0.25) benign(0.007) TCGA-37-4130-01 20 60913365 60913365 C T LAMA5 Missense_Mutation p.C560Y 0.47 probably_damaging(0.999) TCGA-37-4130-01 20 644680 644680 T A SCRT2 Nonsense_Mutation p.K187* 0.61 TCGA-37-4130-01 20 8678283 8678283 G T PLCB1 Silent p.L340L 0.60 TCGA-37-4130-01 20 9495539 9495539 C A LAMP5 Missense_Mutation p.L14I 0.60 tolerated_low_confidence(0.14) benign(0.038) TCGA-37-4130-01 21 11049541 11049541 G T BAGE2 RNA 0.09 TCGA-37-4130-01 21 15516343 15516343 A T LIPI Intron 0.56 TCGA-37-4130-01 21 27945299 27945299 C A CYYR1 5'UTR 0.62 TCGA-37-4130-01 21 31709521 31709521 G T KRTAP27-1 Missense_Mutation p.R156S 0.42 tolerated(0.43) benign(0.004) TCGA-37-4130-01 21 32410680 32410680 C G KRTAP19-8 Missense_Mutation p.G28A 0.36 tolerated_low_confidence(0.27) unknown(0) TCGA-37-4130-01 21 33296965 33296965 G T HUNK Missense_Mutation p.M149I 0.44 deleterious(0.04) probably_damaging(0.998) TCGA-37-4130-01 21 34921779 34921779 T A SON Intron 0.24 TCGA-37-4130-01 21 35195919 35195919 G C ITSN1 Missense_Mutation p.V1049L 0.15 tolerated(0.39) benign(0.105) TCGA-37-4130-01 21 41384967 41384968 - A DSCAM Frame_Shift_Ins p.V2012Gfs*12 0.40 TCGA-37-4130-01 21 41725577 41725577 C T DSCAM Missense_Mutation p.G250E 0.23 deleterious(0) probably_damaging(1) TCGA-37-4130-01 21 45709686 45709686 G T AIRE Splice_Site p.X266_splice 0.22 TCGA-37-4130-01 21 45861792 45861792 T C TRPM2 3'UTR 0.29 TCGA-37-4130-01 21 46888573 46888573 C T COL18A1 Missense_Mutation p.A355V 0.13 unknown(0) TCGA-37-4130-01 21 47611866 47611866 C G LSS Missense_Mutation p.D666H 0.24 tolerated(0.31) benign(0.022) TCGA-37-4130-01 22 17072410 17072410 G C CCT8L2 Missense_Mutation p.P344R 0.12 tolerated(0.07) probably_damaging(0.925) TCGA-37-4130-01 22 18371800 18371800 C T MICAL3 Missense_Mutation p.D631N 0.33 benign(0.027) TCGA-37-4130-01 22 18570956 18570956 G T PEX26 3'UTR 0.45 TCGA-37-4130-01 22 20457246 20457246 C - RIMBP3 Frame_Shift_Del p.Q1353Kfs*27 0.16 TCGA-37-4130-01 22 23135224 23135224 T G IGLV2-11 Missense_Mutation p.V29G 0.34 deleterious_low_confidence(0) benign(0.076) TCGA-37-4130-01 22 24224711 24224711 G T SLC2A11 Missense_Mutation p.A258S 0.30 tolerated(0.5) benign(0.211) TCGA-37-4130-01 22 24567839 24567839 C T CABIN1 Silent p.A1972A 0.16 TCGA-37-4130-01 22 24622213 24622213 C A GGT5 Missense_Mutation p.G354W 0.37 deleterious(0.01) probably_damaging(0.982) TCGA-37-4130-01 22 27019263 27019263 C G CRYBA4 Missense_Mutation p.S35R 0.35 deleterious(0.03) probably_damaging(0.96) TCGA-37-4130-01 22 30127248 30127248 C A ZMAT5 Missense_Mutation p.G160V 0.33 deleterious(0) probably_damaging(0.986) TCGA-37-4130-01 22 30950901 30950901 G A GAL3ST1 3'UTR 0.32 TCGA-37-4130-01 22 36692890 36692890 T A MYH9 Nonsense_Mutation p.R1091* 0.12 TCGA-37-4130-01 22 38509591 38509591 G C PLA2G6 Missense_Mutation p.P702R 0.50 deleterious(0.01) possibly_damaging(0.714) TCGA-37-4130-01 22 39884244 39884254 CAGGACGGCGT - MGAT3 Frame_Shift_Del p.Q298Lfs*15 0.38 TCGA-37-4130-01 22 45813692 45813692 C A RIBC2 Nonsense_Mutation p.S136* 0.54 TCGA-37-4130-01 22 46785343 46785343 C A CELSR1 Missense_Mutation p.Q2133H 0.35 deleterious(0.01) possibly_damaging(0.796) TCGA-37-4130-01 22 47103809 47103809 C G CERK Missense_Mutation p.G216R 0.54 deleterious(0.03) possibly_damaging(0.68) TCGA-37-4130-01 22 50436627 50436627 C T IL17REL Missense_Mutation p.R238H 0.63 tolerated(0.58) possibly_damaging(0.742) TCGA-37-4130-01 22 50678683 50678683 G A TUBGCP6 Silent p.A285A 0.14 TCGA-37-4130-01 22 50684188 50684188 G T HDAC10 Silent p.G634G 0.11 TCGA-37-4130-01 2 108477257 108477257 A T RGPD4 Missense_Mutation p.E598D 0.42 tolerated(0.15) benign(0) TCGA-37-4130-01 2 11053362 11053362 C T KCNF1 Silent p.L270L 0.68 TCGA-37-4130-01 2 125175055 125175055 G T CNTNAP5 Silent p.V139V 0.52 TCGA-37-4130-01 2 125204336 125204336 G T CNTNAP5 Missense_Mutation p.S247I 0.51 tolerated(0.11) benign(0.1) TCGA-37-4130-01 2 127451442 127451442 C A GYPC Missense_Mutation p.P37T 0.08 deleterious(0.01) probably_damaging(0.996) TCGA-37-4130-01 2 130738123 130738123 C G RAB6C Silent p.A145A 0.51 TCGA-37-4130-01 2 132021392 132021392 C G POTEE Missense_Mutation p.H788Q 0.37 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-37-4130-01 2 141283540 141283540 G T LRP1B Missense_Mutation p.F2633L 0.57 benign(0.153) TCGA-37-4130-01 2 152321923 152321923 A T RIF1 Missense_Mutation p.E1963D 0.54 tolerated_low_confidence(0.29) benign(0.004) TCGA-37-4130-01 2 162751308 162751308 A T SLC4A10 Silent p.I438I 0.58 TCGA-37-4130-01 2 1652963 1652963 G T PXDN Silent p.P863P 0.22 TCGA-37-4130-01 2 166789497 166789497 C A TTC21B Missense_Mutation p.G261W 0.15 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 2 168103307 168103307 C T XIRP2 Missense_Mutation p.T1802I 0.59 probably_damaging(0.988) TCGA-37-4130-01 2 168115453 168115453 A G XIRP2 3'UTR 0.62 TCGA-37-4130-01 2 170115536 170115536 C A LRP2 Missense_Mutation p.G838W 0.63 probably_damaging(1) TCGA-37-4130-01 2 171239583 171239583 G C MYO3B Missense_Mutation p.D357H 0.65 deleterious(0.01) benign(0.082) TCGA-37-4130-01 2 172966914 172966914 G A DLX2 Missense_Mutation p.S118F 0.61 tolerated(0.05) possibly_damaging(0.684) TCGA-37-4130-01 2 17696929 17696929 G T RAD51AP2 Missense_Mutation p.H918Q 0.66 deleterious(0.04) benign(0.387) TCGA-37-4130-01 2 177017419 177017419 T A HOXD4 Missense_Mutation p.F173I 0.63 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 2 179214107 179214107 G A OSBPL6 Missense_Mutation p.A407T 0.17 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 2 179419733 179419733 C G TTN Missense_Mutation p.A29485P 0.60 TCGA-37-4130-01 2 179472330 179472330 C A TTN Silent p.V17695V 0.71 TCGA-37-4130-01 2 17962237 17962237 C T GEN1 Silent p.S586S 0.09 TCGA-37-4130-01 2 17963251 17963251 G T GEN1 3'UTR 0.69 TCGA-37-4130-01 2 182390011 182390011 G A ITGA4 Missense_Mutation p.V778I 0.66 tolerated(0.93) benign(0.403) TCGA-37-4130-01 2 190571672 190571672 G T ANKAR Missense_Mutation p.C640F 0.16 deleterious(0.01) probably_damaging(0.942) TCGA-37-4130-01 2 192225384 192225384 A T MYO1B Missense_Mutation p.K197I 0.63 deleterious(0.02) possibly_damaging(0.781) TCGA-37-4130-01 2 1926635 1926635 C A MYT1L Missense_Mutation p.L302F 0.56 tolerated_low_confidence(0.27) benign(0.408) TCGA-37-4130-01 2 198636590 198636590 G C BOLL Missense_Mutation p.P169A 0.18 tolerated(0.5) benign(0.192) TCGA-37-4130-01 2 20146247 20146247 G A WDR35 Nonsense_Mutation p.Q548* 0.64 TCGA-37-4130-01 2 207026180 207026180 G T EEF1B2 Missense_Mutation p.G105V 0.65 deleterious(0.01) probably_damaging(0.98) TCGA-37-4130-01 2 207621970 207621970 C T MDH1B Silent p.E87E 0.64 TCGA-37-4130-01 2 20939938 20939938 T G C2orf43 Missense_Mutation p.T166P 0.13 deleterious(0) probably_damaging(0.998) TCGA-37-4130-01 2 210543346 210543346 G T MAP2 Missense_Mutation p.V105F 0.58 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-37-4130-01 2 211507277 211507277 C A CPS1 Missense_Mutation p.T1016K 0.56 deleterious(0) possibly_damaging(0.838) TCGA-37-4130-01 2 212578280 212578280 C T ERBB4 Missense_Mutation p.C326Y 0.49 deleterious(0) probably_damaging(1) TCGA-37-4130-01 2 21260102 21260102 G A APOB Missense_Mutation p.T188I 0.53 possibly_damaging(0.598) TCGA-37-4130-01 2 219619013 219619013 G T TTLL4 Missense_Mutation p.Q1167H 0.63 tolerated_low_confidence(0.06) benign(0.002) TCGA-37-4130-01 2 219696482 219696482 C G PRKAG3 Silent p.G4G 0.43 TCGA-37-4130-01 2 219903202 219903202 G T CCDC108 Missense_Mutation p.H84Q 0.12 tolerated_low_confidence(0.27) benign(0.092) TCGA-37-4130-01 2 220329203 220329203 G A SPEG Silent p.E918E 0.46 TCGA-37-4130-01 2 223161793 223161793 C T PAX3 Silent p.Q75Q 0.66 TCGA-37-4130-01 2 224845055 224845055 C A SERPINE2 Missense_Mutation p.D361Y 0.56 deleterious(0) probably_damaging(0.996) TCGA-37-4130-01 2 226447450 226447450 C A NYAP2 Silent p.P439P 0.53 TCGA-37-4130-01 2 228846452 228846452 C T SPHKAP Nonsense_Mutation p.W1695* 0.62 TCGA-37-4130-01 2 233655756 233655756 G T GIGYF2 Missense_Mutation p.M345I 0.60 benign(0.358) TCGA-37-4130-01 2 233655757 233655757 G T GIGYF2 Missense_Mutation p.D346Y 0.60 probably_damaging(0.999) TCGA-37-4130-01 2 234344488 234344488 G A DGKD Missense_Mutation p.R204H 0.05 deleterious(0.01) probably_damaging(0.997) TCGA-37-4130-01 2 238434406 238434406 G T MLPH Nonsense_Mutation p.G280* 0.45 TCGA-37-4130-01 2 239990260 239990260 C A HDAC4 Missense_Mutation p.V927L 0.43 deleterious(0.01) benign(0.047) TCGA-37-4130-01 2 240923055 240923055 C T NDUFA10 Intron 0.17 TCGA-37-4130-01 2 241660450 241660450 G T KIF1A Silent p.S1583S 0.17 TCGA-37-4130-01 2 241685207 241685207 G T KIF1A Missense_Mutation p.L1108M 0.21 deleterious(0) probably_damaging(1) TCGA-37-4130-01 2 242432750 242432750 G A FARP2 Missense_Mutation p.V980M 0.09 deleterious(0) probably_damaging(0.989) TCGA-37-4130-01 2 26029153 26029153 C A ASXL2 Missense_Mutation p.G66V 0.63 deleterious(0.04) probably_damaging(0.998) TCGA-37-4130-01 2 27564879 27564879 C A GTF3C2 Missense_Mutation p.S264I 0.60 tolerated(0.47) possibly_damaging(0.467) TCGA-37-4130-01 2 27606435 27606435 C A PPM1G Silent p.V333V 0.62 TCGA-37-4130-01 2 32641065 32641065 C A BIRC6 Missense_Mutation p.H902Q 0.33 probably_damaging(0.986) TCGA-37-4130-01 2 32678947 32678947 G T BIRC6 Nonsense_Mutation p.E1564* 0.63 TCGA-37-4130-01 2 48897075 48897075 C A STON1-GTF2A1L Missense_Mutation p.T1102K 0.70 tolerated(0.1) benign(0.016) TCGA-37-4130-01 2 50723111 50723111 T A NRXN1 Missense_Mutation p.H1041L 0.72 deleterious(0.04) probably_damaging(0.999) TCGA-37-4130-01 2 50779913 50779913 G T NRXN1 Missense_Mutation p.P564Q 0.62 tolerated(0.17) benign(0.069) TCGA-37-4130-01 2 50779997 50779997 C G NRXN1 Missense_Mutation p.W536S 0.60 deleterious(0) probably_damaging(1) TCGA-37-4130-01 2 55433504 55433504 T A CLHC1 Missense_Mutation p.E303V 0.72 deleterious(0) probably_damaging(0.949) TCGA-37-4130-01 2 675545 675545 C G TMEM18 Missense_Mutation p.S48T 0.10 tolerated(0.13) benign(0.236) TCGA-37-4130-01 2 68804951 68804951 G C APLF Splice_Site p.X445_splice 0.65 TCGA-37-4130-01 2 73519314 73519314 C G EGR4 Silent p.L347L 0.40 TCGA-37-4130-01 2 74474234 74474234 T C SLC4A5 Missense_Mutation p.Y663C 0.67 deleterious(0) probably_damaging(1) TCGA-37-4130-01 2 74483032 74483032 G T SLC4A5 Missense_Mutation p.P299T 0.68 deleterious(0) probably_damaging(0.976) TCGA-37-4130-01 2 74743311 74743311 G T TLX2 Missense_Mutation p.V284L 0.53 tolerated_low_confidence(0.08) possibly_damaging(0.501) TCGA-37-4130-01 2 74787339 74787339 C A M1AP Missense_Mutation p.S454I 0.69 deleterious(0) possibly_damaging(0.857) TCGA-37-4130-01 2 77746737 77746737 C T LRRTM4 Silent p.Q86Q 0.70 TCGA-37-4130-01 2 79363959 79363959 G T REG1P RNA 0.64 TCGA-37-4130-01 2 79878745 79878745 G C CTNNA2 Silent p.T21T 0.64 TCGA-37-4130-01 2 80529331 80529331 C A LRRTM1 3'UTR 0.41 TCGA-37-4130-01 2 89278479 89278479 A G IGKV3-7 Missense_Mutation p.F9L 0.04 tolerated(0.67) benign(0.057) TCGA-37-4130-01 2 90060486 90060486 C A IGKV6D-21 Missense_Mutation p.P15T 0.58 tolerated(0.06) benign(0.091) TCGA-37-4130-01 2 96698154 96698154 C A GPAT2 Intron 0.67 TCGA-37-4130-01 2 96861266 96861266 C A STARD7 Silent p.R104R 0.46 TCGA-37-4130-01 2 98430714 98430714 G A TMEM131 Missense_Mutation p.A477V 0.09 tolerated(0.19) benign(0.005) TCGA-37-4130-01 2 98928795 98928795 G T VWA3B Missense_Mutation p.V1290F 0.53 tolerated_low_confidence(0.07) benign(0.001) TCGA-37-4130-01 2 99012672 99012672 C T CNGA3 Missense_Mutation p.R347C 0.69 deleterious(0.01) probably_damaging(0.978) TCGA-37-4130-01 2 99154436 99154436 G T INPP4A Missense_Mutation p.R193M 0.56 deleterious(0.01) probably_damaging(0.967) TCGA-37-4130-01 3 100387877 100387877 C T GPR128 Silent p.Y688Y 0.38 TCGA-37-4130-01 3 100594351 100594351 C A ABI3BP Splice_Site p.X280_splice 0.04 TCGA-37-4130-01 3 100594352 100594352 C T ABI3BP Missense_Mutation p.V280I 0.04 deleterious(0.04) benign(0.097) TCGA-37-4130-01 3 111887872 111887872 A G SLC9C1 Missense_Mutation p.I1030T 0.37 tolerated(0.07) benign(0.007) TCGA-37-4130-01 3 112190127 112190127 G C BTLA Missense_Mutation p.P160R 0.34 deleterious(0) possibly_damaging(0.626) TCGA-37-4130-01 3 113114637 113114637 G A WDR52 Missense_Mutation p.P617L 0.07 deleterious(0.04) benign(0.015) TCGA-37-4130-01 3 113373893 113373893 T G KIAA2018 Silent p.T2212T 0.29 TCGA-37-4130-01 3 119306947 119306947 G T ADPRH 3'UTR 0.62 TCGA-37-4130-01 3 123049738 123049738 G A ADCY5 Silent p.I548I 0.36 TCGA-37-4130-01 3 123471379 123471379 C A MYLK Missense_Mutation p.G58C 0.24 deleterious(0) possibly_damaging(0.85) TCGA-37-4130-01 3 124103747 124103747 C G KALRN Missense_Mutation p.T607R 0.19 deleterious(0) unknown(0) TCGA-37-4130-01 3 126160698 126160698 G A ZXDC Silent p.S768S 0.26 TCGA-37-4130-01 3 12616489 12616489 G A MKRN2 Missense_Mutation p.E281K 0.48 deleterious(0) possibly_damaging(0.842) TCGA-37-4130-01 3 12845014 12845014 G T CAND2 Silent p.S32S 0.51 TCGA-37-4130-01 3 131206557 131206557 C A MRPL3 Missense_Mutation p.R199L 0.26 deleterious(0) probably_damaging(0.991) TCGA-37-4130-01 3 133114801 133114801 G T TMEM108 Missense_Mutation p.V567L 0.26 deleterious(0.02) benign(0.196) TCGA-37-4130-01 3 133119050 133119050 C T BFSP2 Silent p.A41A 0.34 TCGA-37-4130-01 3 133119201 133119201 G T BFSP2 Missense_Mutation p.G92C 0.29 tolerated(0.13) benign(0.02) TCGA-37-4130-01 3 133342208 133342208 G A TOPBP1 Missense_Mutation p.R1008W 0.11 deleterious(0.01) benign(0.033) TCGA-37-4130-01 3 134670676 134670676 G T EPHB1 Missense_Mutation p.C196F 0.34 deleterious(0) probably_damaging(0.967) TCGA-37-4130-01 3 136183769 136183769 C A STAG1 Missense_Mutation p.A423S 0.24 tolerated(1) benign(0.223) TCGA-37-4130-01 3 138738978 138738978 C A PRR23B Missense_Mutation p.A176S 0.41 tolerated(0.1) possibly_damaging(0.727) TCGA-37-4130-01 3 138739145 138739145 G A PRR23B Missense_Mutation p.A120V 0.29 tolerated(0.51) benign(0.228) TCGA-37-4130-01 3 138763052 138763052 G T PRR23C Silent p.V137V 0.24 TCGA-37-4130-01 3 141162233 141162233 G A ZBTB38 Missense_Mutation p.A335T 0.37 tolerated(0.62) benign(0.002) TCGA-37-4130-01 3 146318158 146318158 G T PLSCR5 Missense_Mutation p.Q36K 0.14 tolerated(0.91) benign(0.01) TCGA-37-4130-01 3 147108972 147108972 G T ZIC4 Missense_Mutation p.D300E 0.27 deleterious(0) possibly_damaging(0.794) TCGA-37-4130-01 3 148786123 148786123 C G HLTF Splice_Site p.X299_splice 0.35 TCGA-37-4130-01 3 156266689 156266689 C T SSR3 Intron 0.29 TCGA-37-4130-01 3 156763255 156763255 C T LEKR1 Missense_Mutation p.P599S 0.08 tolerated(0.13) possibly_damaging(0.803) TCGA-37-4130-01 3 158376774 158376774 A C GFM1 Missense_Mutation p.T383P 0.32 tolerated(0.19) benign(0.436) TCGA-37-4130-01 3 164776982 164776982 G T SI Missense_Mutation p.H418N 0.36 tolerated(0.73) benign(0.004) TCGA-37-4130-01 3 164905969 164905969 G T SLITRK3 Missense_Mutation p.L884I 0.27 tolerated_low_confidence(0.17) benign(0.01) TCGA-37-4130-01 3 167754686 167754686 C T GOLIM4 Missense_Mutation p.V261M 0.12 tolerated(0.1) benign(0.059) TCGA-37-4130-01 3 170732366 170732366 G T SLC2A2 Missense_Mutation p.A88E 0.34 tolerated(0.98) benign(0.008) TCGA-37-4130-01 3 170811649 170811649 T A TNIK Missense_Mutation p.E900D 0.27 tolerated(1) benign(0.084) TCGA-37-4130-01 3 170811651 170811651 C T TNIK Missense_Mutation p.E900K 0.28 tolerated(0.22) possibly_damaging(0.759) TCGA-37-4130-01 3 179096150 179096150 G T MFN1 Missense_Mutation p.D451Y 0.21 deleterious(0.01) possibly_damaging(0.786) TCGA-37-4130-01 3 180327792 180327792 G T TTC14 Missense_Mutation p.G592V 0.21 deleterious(0) unknown(0) TCGA-37-4130-01 3 180665663 180665663 G C FXR1 Missense_Mutation p.R70T 0.35 deleterious(0.04) probably_damaging(0.942) TCGA-37-4130-01 3 182763327 182763327 C A MCCC1 Silent p.G319G 0.26 TCGA-37-4130-01 3 184429616 184429616 G A MAGEF1 5'UTR 0.45 TCGA-37-4130-01 3 186338724 186338724 G C AHSG 3'UTR 0.23 TCGA-37-4130-01 3 186572421 186572421 T C ADIPOQ Silent p.R221R 0.32 TCGA-37-4130-01 3 187416266 187416266 C - RTP2 3'UTR 0.28 TCGA-37-4130-01 3 187416531 187416531 G T RTP2 Missense_Mutation p.P145T 0.35 tolerated(0.32) benign(0.3) TCGA-37-4130-01 3 188956643 188956643 G T TPRG1 Missense_Mutation p.A142S 0.37 tolerated(0.38) benign(0.01) TCGA-37-4130-01 3 190158142 190158142 G T TMEM207 Silent p.L65L 0.19 TCGA-37-4130-01 3 197508904 197508904 A G FYTTD1 3'UTR 0.29 TCGA-37-4130-01 3 21552431 21552431 C A ZNF385D Missense_Mutation p.V121L 0.53 tolerated(0.31) benign(0.023) TCGA-37-4130-01 3 27244042 27244042 C G NEK10 Missense_Mutation p.E699D 0.43 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 3 32860341 32860341 G T TRIM71 Missense_Mutation p.G257W 0.58 deleterious(0.01) possibly_damaging(0.755) TCGA-37-4130-01 3 33038802 33038802 C T GLB1 Missense_Mutation p.R590H 0.40 deleterious(0) probably_damaging(1) TCGA-37-4130-01 3 39307511 39307511 G A CX3CR1 Nonsense_Mutation p.Q196* 0.45 TCGA-37-4130-01 3 39374140 39374140 C A CCR8 Nonsense_Mutation p.C106* 0.45 TCGA-37-4130-01 3 431058 431058 C A CHL1 Missense_Mutation p.P791T 0.52 tolerated(1) benign(0.002) TCGA-37-4130-01 3 431059 431059 C A CHL1 Missense_Mutation p.P791H 0.53 deleterious(0.01) possibly_damaging(0.547) TCGA-37-4130-01 3 440757 440757 G C CHL1 Missense_Mutation p.C1104S 0.53 tolerated(0.05) possibly_damaging(0.856) TCGA-37-4130-01 3 44684292 44684292 A T ZNF197 Missense_Mutation p.Q557L 0.48 tolerated(0.05) possibly_damaging(0.696) TCGA-37-4130-01 3 46874695 46874695 G T PRSS42 Missense_Mutation p.R125S 0.15 tolerated(0.12) benign(0.408) TCGA-37-4130-01 3 49095043 49095043 G A QRICH1 Missense_Mutation p.A197V 0.53 tolerated_low_confidence(0.07) benign(0.081) TCGA-37-4130-01 3 49095046 49095046 T A QRICH1 Missense_Mutation p.Q196L 0.52 deleterious_low_confidence(0.01) possibly_damaging(0.901) TCGA-37-4130-01 3 49570075 49570075 G T DAG1 Missense_Mutation p.G711C 0.49 deleterious(0) probably_damaging(1) TCGA-37-4130-01 3 54952839 54952839 A T LRTM1 Missense_Mutation p.Y229N 0.54 deleterious(0) probably_damaging(0.987) TCGA-37-4130-01 3 58631270 58631270 C A FAM3D Missense_Mutation p.V77F 0.53 deleterious(0) probably_damaging(1) TCGA-37-4130-01 3 65479281 65479281 T C MAGI1 Silent p.G152G 0.49 TCGA-37-4130-01 3 71026844 71026844 T C FOXP1 Missense_Mutation p.K462E 0.55 deleterious(0.02) possibly_damaging(0.771) TCGA-37-4130-01 3 77595518 77595518 G T ROBO2 Missense_Mutation p.D338Y 0.47 deleterious(0) probably_damaging(0.961) TCGA-37-4130-01 3 7782186 7782186 C A GRM7 3'UTR 0.55 TCGA-37-4130-01 3 86010690 86010690 G T CADM2 Missense_Mutation p.R281M 0.51 deleterious(0.04) probably_damaging(0.951) TCGA-37-4130-01 3 8671361 8671361 C G SSUH2 Missense_Mutation p.G193R 0.31 deleterious(0) probably_damaging(0.997) TCGA-37-4130-01 3 93646236 93646236 T C PROS1 Missense_Mutation p.Q31R 0.29 tolerated(0.27) benign(0.001) TCGA-37-4130-01 3 97686153 97686153 G C MINA Nonsense_Mutation p.Y95* 0.35 TCGA-37-4130-01 3 9911847 9911847 C T CIDEC Splice_Site p.X132_splice 0.47 TCGA-37-4130-01 3 99513353 99513353 G A COL8A1 Missense_Mutation p.G203E 0.31 deleterious(0) unknown(0) TCGA-37-4130-01 4 100131355 100131355 T C ADH6 Missense_Mutation p.T151A 0.40 deleterious(0.01) possibly_damaging(0.526) TCGA-37-4130-01 4 100503114 100503114 C T MTTP Silent p.Y38Y 0.10 TCGA-37-4130-01 4 106600533 106600533 G T ARHGEF38 3'UTR 0.51 TCGA-37-4130-01 4 109672160 109672160 A C ETNPPL Missense_Mutation p.I211M 0.12 deleterious(0.02) probably_damaging(0.989) TCGA-37-4130-01 4 113356452 113356452 G T ALPK1 Silent p.L1061L 0.12 TCGA-37-4130-01 4 114290860 114290860 G C ANK2 Missense_Mutation p.E3837Q 0.46 possibly_damaging(0.791) TCGA-37-4130-01 4 119154174 119154174 T A NDST3 Silent p.T609T 0.34 TCGA-37-4130-01 4 119220038 119220038 G T PRSS12 Missense_Mutation p.H563N 0.37 deleterious(0.03) probably_damaging(0.993) TCGA-37-4130-01 4 123542076 123542076 C A IL21 Missense_Mutation p.G31C 0.37 tolerated(0.08) benign(0.071) TCGA-37-4130-01 4 126242629 126242629 G T FAT4 Missense_Mutation p.G1688V 0.39 probably_damaging(1) TCGA-37-4130-01 4 126373201 126373201 G A FAT4 Missense_Mutation p.G3677D 0.44 probably_damaging(0.992) TCGA-37-4130-01 4 128635112 128635112 G T INTU Nonsense_Mutation p.G861* 0.16 TCGA-37-4130-01 4 13601655 13601655 G A BOD1L1 Missense_Mutation p.T2290I 0.44 possibly_damaging(0.642) TCGA-37-4130-01 4 13601773 13601773 C A BOD1L1 Missense_Mutation p.D2251Y 0.47 probably_damaging(0.959) TCGA-37-4130-01 4 143081646 143081646 T C INPP4B Silent p.A476A 0.41 TCGA-37-4130-01 4 144107160 144107160 G C USP38 Missense_Mutation p.R186T 0.14 tolerated(0.22) benign(0.017) TCGA-37-4130-01 4 147561867 147561867 G C POU4F2 Silent p.A379A 0.32 TCGA-37-4130-01 4 153244063 153244063 C G FBXW7 Silent p.L698L 0.08 TCGA-37-4130-01 4 15444373 15444373 T A C1QTNF7 Missense_Mutation p.Y281N 0.18 deleterious(0.03) possibly_damaging(0.749) TCGA-37-4130-01 4 155157768 155157768 G T DCHS2 Missense_Mutation p.P2224H 0.44 deleterious(0.02) probably_damaging(0.989) TCGA-37-4130-01 4 156135346 156135346 C A NPY2R Silent p.T85T 0.40 TCGA-37-4130-01 4 156841041 156841041 C - TDO2 Frame_Shift_Del p.R375Dfs*7 0.54 TCGA-37-4130-01 4 157732027 157732027 C A PDGFC Nonsense_Mutation p.E153* 0.40 TCGA-37-4130-01 4 1656795 1656795 C A FAM53A Silent p.V264V 0.12 TCGA-37-4130-01 4 16597392 16597392 T A LDB2 Silent p.S114S 0.15 TCGA-37-4130-01 4 166388858 166388858 T C CPE Missense_Mutation p.W175R 0.13 deleterious(0.01) probably_damaging(0.985) TCGA-37-4130-01 4 167810395 167810395 A T SPOCK3 Missense_Mutation p.C162S 0.41 deleterious(0) probably_damaging(1) TCGA-37-4130-01 4 169353637 169353637 G C DDX60L Missense_Mutation p.D495E 0.18 tolerated(0.21) possibly_damaging(0.737) TCGA-37-4130-01 4 170913438 170913438 G T MFAP3L Missense_Mutation p.S107R 0.13 deleterious(0.03) benign(0.015) TCGA-37-4130-01 4 177142690 177142690 G C ASB5 Missense_Mutation p.P149R 0.13 tolerated(0.1) benign(0.106) TCGA-37-4130-01 4 187549328 187549328 A T FAT1 Missense_Mutation p.V1597E 0.11 probably_damaging(0.962) TCGA-37-4130-01 4 189063632 189063632 T G TRIML1 Missense_Mutation p.L244R 0.27 deleterious(0.01) benign(0.002) TCGA-37-4130-01 4 20555537 20555537 G C SLIT2 Missense_Mutation p.E891Q 0.16 tolerated(0.32) benign(0.422) TCGA-37-4130-01 4 247878 247878 G T ZNF876P RNA 0.09 TCGA-37-4130-01 4 25019748 25019748 C A LGI2 Missense_Mutation p.C173F 0.15 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 4 25404603 25404603 A G ANAPC4 Missense_Mutation p.S409G 0.10 tolerated(0.13) possibly_damaging(0.534) TCGA-37-4130-01 4 2691240 2691240 C T FAM193A Missense_Mutation p.P489L 0.31 deleterious(0.03) probably_damaging(0.996) TCGA-37-4130-01 4 27024742 27024742 G T STIM2 3'UTR 0.62 TCGA-37-4130-01 4 3132097 3132097 G T HTT Missense_Mutation p.D645Y 0.25 possibly_damaging(0.886) TCGA-37-4130-01 4 39293306 39293306 T A RFC1 Missense_Mutation p.S1042C 0.39 deleterious(0.02) benign(0.292) TCGA-37-4130-01 4 3949807 3949807 C T FAM86EP RNA 0.32 TCGA-37-4130-01 4 40776932 40776932 A G NSUN7 Missense_Mutation p.I264V 0.36 tolerated(0.05) benign(0.071) TCGA-37-4130-01 4 43022368 43022368 T C GRXCR1 Intron 0.37 TCGA-37-4130-01 4 43032640 43032640 G T GRXCR1 3'UTR 0.32 TCGA-37-4130-01 4 44631464 44631464 C A YIPF7 Nonsense_Mutation p.G152* 0.29 TCGA-37-4130-01 4 44631488 44631488 T C YIPF7 Missense_Mutation p.I144V 0.23 tolerated(0.15) possibly_damaging(0.817) TCGA-37-4130-01 4 47163350 47163350 G T GABRB1 Missense_Mutation p.D109Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 4 47405398 47405398 T A GABRB1 Missense_Mutation p.V203D 0.47 deleterious(0) probably_damaging(0.993) TCGA-37-4130-01 4 47405673 47405673 G C GABRB1 Silent p.L260L 0.29 TCGA-37-4130-01 4 517440 517440 G T PIGG Missense_Mutation p.G603C 0.21 tolerated(0.33) benign(0.001) TCGA-37-4130-01 4 56737300 56737300 G T EXOC1 Missense_Mutation p.A289S 0.40 tolerated(0.07) possibly_damaging(0.893) TCGA-37-4130-01 4 57860890 57860890 A G POLR2B Missense_Mutation p.Q145R 0.43 tolerated(0.37) benign(0.102) TCGA-37-4130-01 4 62761499 62761499 G T LPHN3 Missense_Mutation p.G544C 0.49 deleterious(0) probably_damaging(0.992) TCGA-37-4130-01 4 65145704 65145704 G T TECRL 3'UTR 0.24 TCGA-37-4130-01 4 68693110 68693110 G A TMPRSS11D Missense_Mutation p.A274V 0.26 deleterious(0) probably_damaging(1) TCGA-37-4130-01 4 70504773 70504773 G T UGT2A2 Missense_Mutation p.P196T 0.39 tolerated(0.06) probably_damaging(0.991) TCGA-37-4130-01 4 70866681 70866681 G A STATH 3'UTR 0.28 TCGA-37-4130-01 4 70920136 70920136 A G HTN1 Splice_Site p.X25_splice 0.38 TCGA-37-4130-01 4 70920152 70920152 T A HTN1 Nonsense_Mutation p.Y29* 0.27 TCGA-37-4130-01 4 70921290 70921290 C G HTN1 3'UTR 0.42 TCGA-37-4130-01 4 71201574 71201574 C A CABS1 Missense_Mutation p.S273Y 0.27 deleterious(0) benign(0.278) TCGA-37-4130-01 4 71396857 71396857 T A AMTN Silent p.L153L 0.26 TCGA-37-4130-01 4 71396858 71396858 C A AMTN Missense_Mutation p.P154T 0.27 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 4 73979625 73979625 C A ANKRD17 Nonsense_Mutation p.E1429* 0.40 TCGA-37-4130-01 4 74274395 74274395 G T ALB Nonsense_Mutation p.E119* 0.42 TCGA-37-4130-01 4 74719533 74719534 TG - PF4V1 Frame_Shift_Del p.V47Efs*52 0.49 TCGA-37-4130-01 4 786251 786251 G T CPLX1 Silent p.R59R 0.23 TCGA-37-4130-01 4 79295313 79295313 G A FRAS1 Missense_Mutation p.R1020H 0.22 benign(0.004) TCGA-37-4130-01 4 8307921 8307921 C A HTRA3 3'UTR 0.29 TCGA-37-4130-01 4 83280676 83280676 C G HNRNPD Missense_Mutation p.R136P 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-37-4130-01 4 8602950 8602950 G A CPZ Silent p.E74E 0.08 TCGA-37-4130-01 4 86615 86615 G C Z95704.2 RNA 0.23 TCGA-37-4130-01 4 88243855 88243855 C T HSD17B13 Missense_Mutation p.G47R 0.41 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 4 88901215 88901215 A C SPP1 Silent p.P37P 0.16 TCGA-37-4130-01 4 90857208 90857208 A C MMRN1 Missense_Mutation p.N793H 0.47 deleterious(0.05) possibly_damaging(0.778) TCGA-37-4130-01 4 91229448 91229448 G A CCSER1 Missense_Mutation p.G5R 0.26 deleterious(0.01) benign(0.178) TCGA-37-4130-01 4 91230000 91230000 T A CCSER1 Missense_Mutation p.Y189N 0.44 deleterious(0.03) benign(0.203) TCGA-37-4130-01 4 94411830 94411830 G T GRID2 Missense_Mutation p.M633I 0.35 deleterious(0.02) benign(0.055) TCGA-37-4130-01 4 96761351 96761351 C A PDHA2 Nonsense_Mutation p.S17* 0.19 TCGA-37-4130-01 5 106723412 106723412 G - EFNA5 Frame_Shift_Del p.P160Qfs*6 0.21 TCGA-37-4130-01 5 112103083 112103083 G T APC Nonsense_Mutation p.E140* 0.41 TCGA-37-4130-01 5 112337298 112337298 G C DCP2 Missense_Mutation p.D245H 0.46 deleterious(0) probably_damaging(0.96) TCGA-37-4130-01 5 112899731 112899731 C T YTHDC2 Missense_Mutation p.P873L 0.45 deleterious(0) probably_damaging(0.967) TCGA-37-4130-01 5 115323600 115323600 G T AQPEP Missense_Mutation p.D357Y 0.45 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 5 118483011 118483011 A C DMXL1 Silent p.P919P 0.16 TCGA-37-4130-01 5 1244882 1244882 C G SLC6A18 Nonsense_Mutation p.Y552* 0.10 TCGA-37-4130-01 5 126746276 126746276 C T MEGF10 Silent p.H371H 0.50 TCGA-37-4130-01 5 127645056 127645056 C G FBN2 Missense_Mutation p.G1746R 0.35 tolerated(0.06) possibly_damaging(0.885) TCGA-37-4130-01 5 130766718 130766718 C A RAPGEF6 Missense_Mutation p.W1441C 0.19 deleterious_low_confidence(0) possibly_damaging(0.823) TCGA-37-4130-01 5 130834287 130834287 C A RAPGEF6 Missense_Mutation p.R423L 0.40 deleterious(0) probably_damaging(0.953) TCGA-37-4130-01 5 131944826 131944826 G T RAD50 Missense_Mutation p.E949D 0.43 tolerated(0.24) benign(0.021) TCGA-37-4130-01 5 132202528 132202528 G C UQCRQ Intron 0.37 TCGA-37-4130-01 5 134364741 134364741 T C PITX1 Missense_Mutation p.M225V 0.54 tolerated(0.19) benign(0.034) TCGA-37-4130-01 5 137849381 137849381 T A ETF1 Silent p.L139L 0.44 TCGA-37-4130-01 5 13786416 13786416 C T DNAH5 Missense_Mutation p.E2898K 0.20 benign(0.292) TCGA-37-4130-01 5 13811932 13811932 C A DNAH5 Missense_Mutation p.G2411C 0.19 probably_damaging(0.965) TCGA-37-4130-01 5 140167318 140167318 C A PCDHA1 Missense_Mutation p.D481E 0.52 deleterious_low_confidence(0) probably_damaging(1) TCGA-37-4130-01 5 140229517 140229517 G A PCDHA9 Silent p.A479A 0.38 TCGA-37-4130-01 5 140502192 140502192 G T PCDHB4 Missense_Mutation p.Q204H 0.46 deleterious_low_confidence(0.01) benign(0.247) TCGA-37-4130-01 5 140562133 140562133 C A PCDHB16 5'UTR 0.35 TCGA-37-4130-01 5 140572408 140572408 C A PCDHB10 Missense_Mutation p.L95M 0.39 deleterious_low_confidence(0.03) probably_damaging(0.932) TCGA-37-4130-01 5 140594937 140594937 A T PCDHB13 Missense_Mutation p.R414S 0.42 deleterious_low_confidence(0.03) benign(0.031) TCGA-37-4130-01 5 140604767 140604767 C A PCDHB14 Missense_Mutation p.P564T 0.44 deleterious_low_confidence(0) possibly_damaging(0.685) TCGA-37-4130-01 5 140604768 140604768 C A PCDHB14 Missense_Mutation p.P564Q 0.44 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-37-4130-01 5 140682783 140682783 C A SLC25A2 Missense_Mutation p.G217V 0.26 deleterious(0) probably_damaging(0.997) TCGA-37-4130-01 5 140768274 140768274 G C PCDHGB4 Missense_Mutation p.A275P 0.43 deleterious(0) probably_damaging(0.989) TCGA-37-4130-01 5 140774100 140774100 G A PCDHGA8 Missense_Mutation p.G574S 0.44 deleterious_low_confidence(0) benign(0.141) TCGA-37-4130-01 5 140794984 140794984 G C PCDHGA10 Missense_Mutation p.D748H 0.50 deleterious_low_confidence(0.01) possibly_damaging(0.584) TCGA-37-4130-01 5 1422083 1422083 C A SLC6A3 Missense_Mutation p.G234W 0.18 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 5 143207 143218 TCCATTGCCACA CTCATTTCCACC PLEKHG4B Missense_Mutation p.LHCHN152PHFHH 0.15 TCGA-37-4130-01 5 145197562 145197562 G A PRELID2 Missense_Mutation p.P100L 0.44 tolerated(0.68) benign(0.002) TCGA-37-4130-01 5 145393601 145393601 G T SH3RF2 Missense_Mutation p.V346F 0.48 tolerated(0.71) benign(0.001) TCGA-37-4130-01 5 147027997 147027997 G T JAKMIP2 Missense_Mutation p.A293D 0.05 deleterious(0) benign(0.177) TCGA-37-4130-01 5 14871566 14871566 C A ANKH 5'UTR 0.34 TCGA-37-4130-01 5 150071275 150071275 C - RBM22 3'UTR 0.36 TCGA-37-4130-01 5 150566981 150566981 G A CCDC69 Missense_Mutation p.T120I 0.34 tolerated(0.07) benign(0.007) TCGA-37-4130-01 5 154395908 154395908 G T KIF4B Missense_Mutation p.R830M 0.34 deleterious(0) probably_damaging(0.996) TCGA-37-4130-01 5 158701630 158701630 A G UBLCP1 Silent p.K195K 0.26 TCGA-37-4130-01 5 15936750 15936750 C A FBXL7 Missense_Mutation p.L311M 0.47 deleterious(0.01) benign(0.438) TCGA-37-4130-01 5 168114121 168114121 G T SLIT3 Missense_Mutation p.S1059R 0.33 tolerated(1) benign(0) TCGA-37-4130-01 5 168149277 168149277 G T SLIT3 Silent p.R823R 0.33 TCGA-37-4130-01 5 168189646 168189646 A G SLIT3 Missense_Mutation p.L503P 0.15 tolerated(0.46) benign(0.025) TCGA-37-4130-01 5 168201314 168201314 C A SLIT3 Missense_Mutation p.L407F 0.35 deleterious(0.02) probably_damaging(1) TCGA-37-4130-01 5 169018052 169018052 A G SPDL1 Missense_Mutation p.S54G 0.37 tolerated(0.41) benign(0.003) TCGA-37-4130-01 5 169145706 169145706 A T DOCK2 Missense_Mutation p.R726S 0.37 tolerated(0.51) benign(0.016) TCGA-37-4130-01 5 172396656 172396656 G T RPL26L1 3'UTR 0.38 TCGA-37-4130-01 5 175722035 175722035 C T SIMC1 Silent p.N44N 0.38 TCGA-37-4130-01 5 176836535 176836535 C A F12 5'UTR 0.47 TCGA-37-4130-01 5 177666160 177666160 C A COL23A1 Silent p.V534V 0.45 TCGA-37-4130-01 5 178585824 178585824 G T ADAMTS2 Silent p.R344R 0.55 TCGA-37-4130-01 5 178770935 178770935 G T ADAMTS2 Silent p.R123R 0.57 TCGA-37-4130-01 5 180582320 180582320 C A OR2V2 Silent p.A126A 0.53 TCGA-37-4130-01 5 24491830 24491830 G T CDH10 Missense_Mutation p.S577R 0.23 deleterious(0) probably_damaging(0.985) TCGA-37-4130-01 5 24511584 24511584 C A CDH10 Missense_Mutation p.G285V 0.17 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 5 26881596 26881596 G A CDH9 Silent p.D673D 0.17 TCGA-37-4130-01 5 26915838 26915838 C G CDH9 Silent p.P141P 0.40 TCGA-37-4130-01 5 32789706 32789706 G C AC026703.1 Missense_Mutation p.G67R 0.24 probably_damaging(0.979) TCGA-37-4130-01 5 33453440 33453440 G T TARS Missense_Mutation p.V159L 0.16 tolerated(1) benign(0.02) TCGA-37-4130-01 5 34004714 34004714 G C AMACR Missense_Mutation p.R173G 0.17 deleterious(0.03) benign(0.022) TCGA-37-4130-01 5 35039598 35039598 G C AGXT2 Missense_Mutation p.R65G 0.24 deleterious(0.03) benign(0.203) TCGA-37-4130-01 5 37299033 37299033 G C NUP155 Missense_Mutation p.L1244V 0.25 tolerated(0.19) benign(0.173) TCGA-37-4130-01 5 40928683 40928683 T A C7 Missense_Mutation p.V3E 0.16 deleterious(0.01) benign(0.063) TCGA-37-4130-01 5 40959655 40959655 G T C7 Missense_Mutation p.G532W 0.12 deleterious(0) probably_damaging(1) TCGA-37-4130-01 5 41382589 41382589 C A PLCXD3 Missense_Mutation p.G51C 0.21 deleterious(0) probably_damaging(0.997) TCGA-37-4130-01 5 43040042 43040042 C A ANXA2R Missense_Mutation p.W36L 0.30 deleterious(0.04) probably_damaging(0.929) TCGA-37-4130-01 5 45267296 45267296 G A HCN1 Missense_Mutation p.R560C 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-37-4130-01 5 45645315 45645315 A T HCN1 Nonsense_Mutation p.L274* 0.21 TCGA-37-4130-01 5 49707102 49707102 T A EMB Missense_Mutation p.K104N 0.16 deleterious(0) possibly_damaging(0.841) TCGA-37-4130-01 5 5242238 5242238 C A ADAMTS16 Missense_Mutation p.P866T 0.36 tolerated(0.59) benign(0.006) TCGA-37-4130-01 5 64625288 64625288 C A ADAMTS6 Missense_Mutation p.M380I 0.53 deleterious(0.03) benign(0.394) TCGA-37-4130-01 5 70307102 70307102 T C NAIP Missense_Mutation p.K223R 0.63 tolerated(0.09) benign(0.143) TCGA-37-4130-01 5 71479652 71479652 G C MAP1B Missense_Mutation p.E123D 0.05 unknown(0) TCGA-37-4130-01 5 7414761 7414761 G A ADCY2 Missense_Mutation p.V96I 0.25 deleterious(0.01) benign(0.126) TCGA-37-4130-01 5 7414864 7414864 C A ADCY2 Missense_Mutation p.T130N 0.41 tolerated(0.48) benign(0.002) TCGA-37-4130-01 5 77471659 77471659 C A AP3B1 Missense_Mutation p.E348D 0.56 deleterious(0) possibly_damaging(0.531) TCGA-37-4130-01 5 79355540 79355540 C T THBS4 Nonsense_Mutation p.Q267* 0.48 TCGA-37-4130-01 5 80626268 80626268 G A ACOT12 Missense_Mutation p.S538F 0.54 tolerated(0.11) possibly_damaging(0.703) TCGA-37-4130-01 5 82816125 82816125 G A VCAN Missense_Mutation p.G667E 0.12 tolerated(0.21) benign(0.059) TCGA-37-4130-01 5 9122791 9122791 G T SEMA5A Silent p.G586G 0.34 TCGA-37-4130-01 5 914655 914655 G A TRIP13 Missense_Mutation p.V366M 0.03 tolerated(0.22) benign(0.018) TCGA-37-4130-01 5 94772587 94772587 C T FAM81B Silent p.H290H 0.18 TCGA-37-4130-01 5 96097999 96097999 G - CAST Frame_Shift_Del p.A578Lfs*43 0.36 TCGA-37-4130-01 5 98129372 98129372 G A RGMB Missense_Mutation p.S451N 0.51 tolerated(0.48) benign(0.006) TCGA-37-4130-01 6 100390905 100390905 C A MCHR2 Missense_Mutation p.W169C 0.12 deleterious(0) probably_damaging(1) TCGA-37-4130-01 6 100868704 100868704 T G SIM1 Missense_Mutation p.S377R 0.15 tolerated(0.56) benign(0.002) TCGA-37-4130-01 6 100868705 100868705 G T SIM1 Silent p.S376S 0.14 TCGA-37-4130-01 6 101090523 101090523 C T ASCC3 Missense_Mutation p.A1279T 0.13 tolerated(0.07) possibly_damaging(0.629) TCGA-37-4130-01 6 101109821 101109821 C A ASCC3 Missense_Mutation p.R855L 0.41 deleterious(0) probably_damaging(1) TCGA-37-4130-01 6 10586021 10586021 G T GCNT2 Intron 0.50 TCGA-37-4130-01 6 110301268 110301268 C A GPR6 Missense_Mutation p.A318D 0.53 deleterious(0) probably_damaging(0.998) TCGA-37-4130-01 6 110714307 110714307 G T DDO Missense_Mutation p.L261I 0.14 tolerated(0.12) possibly_damaging(0.664) TCGA-37-4130-01 6 117679001 117679001 T C ROS1 Missense_Mutation p.T1274A 0.13 deleterious(0.04) benign(0.025) TCGA-37-4130-01 6 122741359 122741359 C T HSF2 Missense_Mutation p.H225Y 0.10 tolerated(0.11) benign(0.424) TCGA-37-4130-01 6 125369371 125369371 C T RNF217 Intron 0.41 TCGA-37-4130-01 6 127768625 127768625 G T KIAA0408 Nonsense_Mutation p.S280* 0.42 TCGA-37-4130-01 6 128403671 128403671 G T PTPRK Missense_Mutation p.P563H 0.50 deleterious(0) probably_damaging(0.998) TCGA-37-4130-01 6 129591869 129591869 C A LAMA2 Missense_Mutation p.A808D 0.44 deleterious(0.02) possibly_damaging(0.892) TCGA-37-4130-01 6 130761558 130761558 A T TMEM200A 5'UTR 0.37 TCGA-37-4130-01 6 133137641 133137641 A T RPS12 Missense_Mutation p.E58V 0.47 deleterious(0) benign(0.136) TCGA-37-4130-01 6 136599187 136599187 C A BCLAF1 Nonsense_Mutation p.G278* 0.13 TCGA-37-4130-01 6 144843253 144843253 A T UTRN Silent p.P1893P 0.11 TCGA-37-4130-01 6 146755398 146755398 C G GRM1 Silent p.L1017L 0.07 TCGA-37-4130-01 6 161127549 161127549 G A PLG Missense_Mutation p.E54K 0.12 deleterious(0.04) possibly_damaging(0.734) TCGA-37-4130-01 6 161157920 161157920 G A PLG Silent p.A561A 0.47 TCGA-37-4130-01 6 161173146 161173152 GGTACTT - PLG Splice_Site p.X709_splice 0.15 TCGA-37-4130-01 6 162475122 162475122 C T PARK2 Splice_Site p.X206_splice 0.11 TCGA-37-4130-01 6 165723087 165723087 C A C6orf118 5'UTR 0.14 TCGA-37-4130-01 6 168434641 168434641 G T KIF25 Missense_Mutation p.G83C 0.54 deleterious(0.04) probably_damaging(0.962) TCGA-37-4130-01 6 169637364 169637364 G T THBS2 Missense_Mutation p.R460S 0.11 deleterious(0) probably_damaging(0.99) TCGA-37-4130-01 6 169648641 169648641 G T THBS2 Silent p.T160T 0.50 TCGA-37-4130-01 6 24666933 24666933 T G TDP2 Missense_Mutation p.E53A 0.09 deleterious(0.05) benign(0.002) TCGA-37-4130-01 6 25845495 25845495 G T SLC17A3 3'UTR 0.60 TCGA-37-4130-01 6 26271363 26271363 G T HIST1H3G Missense_Mutation p.R84S 0.48 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-37-4130-01 6 27418961 27418961 T C ZNF184 3'UTR 0.10 TCGA-37-4130-01 6 27861512 27861512 C T HIST1H2BO Missense_Mutation p.T91I 0.08 deleterious_low_confidence(0) benign(0.41) TCGA-37-4130-01 6 27879321 27879321 G C OR2B2 Nonsense_Mutation p.Y259* 0.50 TCGA-37-4130-01 6 28212737 28212737 G C ZKSCAN4 3'UTR 0.51 TCGA-37-4130-01 6 28971319 28971319 C A ZNF311 Missense_Mutation p.R21L 0.07 tolerated_low_confidence(0.83) benign(0.005) TCGA-37-4130-01 6 29342629 29342629 C A OR12D3 Missense_Mutation p.A146S 0.13 tolerated(0.86) benign(0.042) TCGA-37-4130-01 6 29365357 29365357 A G OR12D2 Missense_Mutation p.K294R 0.53 tolerated(0.08) benign(0.111) TCGA-37-4130-01 6 29761642 29761642 C G HLA-V Intron 0.14 TCGA-37-4130-01 6 30114849 30114849 C A TRIM40 Missense_Mutation p.Q148K 0.12 deleterious(0.03) benign(0.194) TCGA-37-4130-01 6 32178691 32178691 G T NOTCH4 Nonsense_Mutation p.C901* 0.44 TCGA-37-4130-01 6 32726718 32726718 C A HLA-DQB2 Silent p.L185L 0.45 TCGA-37-4130-01 6 35423670 35423670 G T FANCE Missense_Mutation p.W132L 0.71 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 6 38690968 38690968 A T DNAH8 5'UTR 0.59 TCGA-37-4130-01 6 38851724 38851724 G T DNAH8 Missense_Mutation p.V2520L 0.11 benign(0.302) TCGA-37-4130-01 6 38942253 38942253 C G DNAH8 Missense_Mutation p.P4044R 0.09 probably_damaging(0.997) TCGA-37-4130-01 6 40400802 40400802 C A LRFN2 Silent p.V17V 0.48 TCGA-37-4130-01 6 41002700 41002700 C T UNC5CL Silent p.R38R 0.05 TCGA-37-4130-01 6 41884550 41884550 T A MED20 Missense_Mutation p.T48S 0.08 tolerated(0.85) benign(0.067) TCGA-37-4130-01 6 42146044 42146044 C G GUCA1A Nonsense_Mutation p.Y76* 0.07 TCGA-37-4130-01 6 44102401 44102401 G T TMEM63B Missense_Mutation p.R27L 0.46 deleterious(0.05) probably_damaging(0.998) TCGA-37-4130-01 6 44271917 44271917 C A AARS2 Splice_Site p.X669_splice 0.49 TCGA-37-4130-01 6 47253928 47253928 C A TNFRSF21 Missense_Mutation p.R167L 0.14 tolerated(0.29) benign(0.004) TCGA-37-4130-01 6 49753599 49753599 G T PGK2 3'UTR 0.30 TCGA-37-4130-01 6 49754355 49754355 G T PGK2 Silent p.P182P 0.25 TCGA-37-4130-01 6 51637500 51637500 C A PKHD1 Missense_Mutation p.R2881I 0.19 deleterious(0) possibly_damaging(0.781) TCGA-37-4130-01 6 53372385 53372385 T G GCLC Missense_Mutation p.K326T 0.18 deleterious(0.01) probably_damaging(1) TCGA-37-4130-01 6 54792322 54792322 C A FAM83B Missense_Mutation p.T209K 0.08 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 6 56350269 56350269 T C DST Silent p.R4393R 0.16 TCGA-37-4130-01 6 56391253 56391253 A G DST Missense_Mutation p.M3389T 0.12 benign(0.004) TCGA-37-4130-01 6 564897 564897 T G EXOC2 Silent p.S492S 0.66 TCGA-37-4130-01 6 69949096 69949096 G T BAI3 Missense_Mutation p.G931V 0.16 deleterious(0) probably_damaging(1) TCGA-37-4130-01 6 71012736 71012737 - T COL9A1 5'UTR 0.21 TCGA-37-4130-01 6 71235310 71235310 C G FAM135A Missense_Mutation p.N841K 0.20 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 6 71665768 71665768 C A B3GAT2 Missense_Mutation p.R122L 0.33 deleterious(0.02) benign(0.329) TCGA-37-4130-01 6 74493446 74493446 G T CD109 Nonsense_Mutation p.E708* 0.15 TCGA-37-4130-01 6 7862554 7862554 G T BMP6 Missense_Mutation p.A343S 0.24 tolerated(0.75) benign(0.338) TCGA-37-4130-01 6 80745107 80745107 G T TTK Nonsense_Mutation p.E633* 0.37 TCGA-37-4130-01 6 80750339 80750339 G T TTK Missense_Mutation p.K803N 0.12 deleterious(0.01) possibly_damaging(0.544) TCGA-37-4130-01 6 84799061 84799061 G A MRAP2 Missense_Mutation p.R160K 0.44 tolerated(0.42) benign(0.002) TCGA-37-4130-01 6 88775924 88775924 G T SPACA1 Silent p.G252G 0.42 TCGA-37-4130-01 6 89324005 89324005 T C RNGTT Missense_Mutation p.Y539C 0.47 deleterious(0.01) possibly_damaging(0.877) TCGA-37-4130-01 6 90459014 90459014 T C MDN1 Silent p.T1230T 0.15 TCGA-37-4130-01 6 90604790 90604790 T C GJA10 Silent p.F201F 0.13 TCGA-37-4130-01 6 90605220 90605220 G A GJA10 Missense_Mutation p.G345R 0.45 tolerated(1) benign(0) TCGA-37-4130-01 6 90660594 90660594 G T BACH2 Missense_Mutation p.L411I 0.34 tolerated(0.07) possibly_damaging(0.663) TCGA-37-4130-01 6 97063647 97063647 A T FHL5 Nonstop_Mutation p.*285Lext*52 0.49 TCGA-37-4130-01 6 99817676 99817676 C A COQ3 Missense_Mutation p.V304L 0.17 tolerated(0.15) benign(0.034) TCGA-37-4130-01 7 100281249 100281249 T A GIGYF1 Missense_Mutation p.E659V 0.21 deleterious(0.01) unknown(0) TCGA-37-4130-01 7 100282690 100282690 G T GIGYF1 Silent p.G424G 0.38 TCGA-37-4130-01 7 100349626 100349626 C G ZAN Missense_Mutation p.P633R 0.41 possibly_damaging(0.862) TCGA-37-4130-01 7 100454740 100454740 G T SLC12A9 Silent p.P233P 0.32 TCGA-37-4130-01 7 100550189 100550189 C - MUC3A Frame_Shift_Del p.I259Sfs*11 0.12 TCGA-37-4130-01 7 100849345 100849345 C A PLOD3 3'UTR 0.46 TCGA-37-4130-01 7 103131123 103131123 G T RELN Silent p.V3199V 0.24 TCGA-37-4130-01 7 103175829 103175829 C A RELN Missense_Mutation p.R2428L 0.34 deleterious(0.05) benign(0.156) TCGA-37-4130-01 7 107323776 107323776 C A SLC26A4 Missense_Mutation p.P299T 0.24 deleterious(0) probably_damaging(1) TCGA-37-4130-01 7 107389393 107389393 A G CBLL1 Missense_Mutation p.I28V 0.27 deleterious(0.03) possibly_damaging(0.527) TCGA-37-4130-01 7 107423430 107423430 T A SLC26A3 Missense_Mutation p.T410S 0.09 tolerated(0.08) benign(0.277) TCGA-37-4130-01 7 107823138 107823138 C T NRCAM Splice_Site p.X844_splice 0.32 TCGA-37-4130-01 7 113518796 113518796 T G PPP1R3A Missense_Mutation p.H784P 0.26 deleterious(0) probably_damaging(0.986) TCGA-37-4130-01 7 113518952 113518952 A G PPP1R3A Missense_Mutation p.I732T 0.29 deleterious(0.01) probably_damaging(0.979) TCGA-37-4130-01 7 11457091 11457091 T A THSD7A Missense_Mutation p.T1175S 0.12 tolerated(1) benign(0.277) TCGA-37-4130-01 7 11675757 11675757 C G THSD7A Missense_Mutation p.S341T 0.12 deleterious(0.02) benign(0.063) TCGA-37-4130-01 7 1195088 1195088 C A ZFAND2A Splice_Site p.X94_splice 0.72 TCGA-37-4130-01 7 120629782 120629782 G T CPED1 Missense_Mutation p.R36L 0.25 tolerated(0.8) benign(0.066) TCGA-37-4130-01 7 121659251 121659252 - C PTPRZ1 Frame_Shift_Ins p.L1641Pfs*40 0.29 TCGA-37-4130-01 7 122377124 122377124 T A CADPS2 Splice_Site p.X114_splice 0.22 TCGA-37-4130-01 7 126883356 126883356 C G GRM8 5'UTR 0.23 TCGA-37-4130-01 7 128457885 128457885 G T CCDC136 Missense_Mutation p.W1146L 0.28 deleterious(0) possibly_damaging(0.616) TCGA-37-4130-01 7 138968699 138968699 G T UBN2 Missense_Mutation p.K1016N 0.30 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-37-4130-01 7 141293124 141293124 G T AGK Intron 0.47 TCGA-37-4130-01 7 141672881 141672881 C A TAS2R38 Silent p.V203V 0.31 TCGA-37-4130-01 7 141705373 141705373 G A MGAM Missense_Mutation p.V15M 0.32 tolerated(0.15) benign(0.001) TCGA-37-4130-01 7 141731590 141731590 G A MGAM Nonsense_Mutation p.W527* 0.31 TCGA-37-4130-01 7 142000836 142000836 G A TRBV2 5'UTR 0.26 TCGA-37-4130-01 7 142028429 142028429 C A TRBV6-1 Silent p.R55R 0.30 TCGA-37-4130-01 7 142206513 142206513 C A TRBV10-2 Missense_Mutation p.E114D 0.31 tolerated(0.72) benign(0.002) TCGA-37-4130-01 7 142239574 142239574 C A TRBV9 Silent p.L102L 0.35 TCGA-37-4130-01 7 142510390 142510390 C G TRBV30 Missense_Mutation p.Q72H 0.50 tolerated(0.14) benign(0.048) TCGA-37-4130-01 7 142561044 142561044 T A EPHB6 Missense_Mutation p.L20Q 0.19 deleterious(0) benign(0.172) TCGA-37-4130-01 7 142561892 142561892 C G EPHB6 Missense_Mutation p.R112G 0.23 deleterious(0) probably_damaging(1) TCGA-37-4130-01 7 142570172 142570172 G T TRPV6 Silent p.S616S 0.26 TCGA-37-4130-01 7 142723458 142723458 G T OR9A2 Silent p.L254L 0.28 TCGA-37-4130-01 7 142881133 142881133 G T TAS2R39 Missense_Mutation p.G208C 0.25 tolerated(0.1) possibly_damaging(0.641) TCGA-37-4130-01 7 142920117 142920117 C A TAS2R40 Missense_Mutation p.L316I 0.24 tolerated(0.06) benign(0.175) TCGA-37-4130-01 7 143095863 143095863 G A EPHA1 Silent p.G389G 0.27 TCGA-37-4130-01 7 143701106 143701106 A G OR6B1 Missense_Mutation p.Q6R 0.32 tolerated(0.5) benign(0.034) TCGA-37-4130-01 7 143792213 143792213 C A OR2A12 Missense_Mutation p.Q5K 0.25 deleterious(0.03) benign(0.002) TCGA-37-4130-01 7 143792868 143792868 C A OR2A12 Missense_Mutation p.A223D 0.32 deleterious(0.01) probably_damaging(0.955) TCGA-37-4130-01 7 147336346 147336346 C T CNTNAP2 Silent p.C682C 0.15 TCGA-37-4130-01 7 150704341 150704341 G T NOS3 Missense_Mutation p.G697C 0.21 deleterious(0.03) possibly_damaging(0.518) TCGA-37-4130-01 7 150772699 150772699 C A SLC4A2 Missense_Mutation p.S1103Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 7 151962216 151962216 T C KMT2C Missense_Mutation p.Q364R 0.03 probably_damaging(0.989) TCGA-37-4130-01 7 151962217 151962217 G T KMT2C Missense_Mutation p.Q364K 0.03 probably_damaging(0.983) TCGA-37-4130-01 7 154684049 154684049 C T DPP6 Silent p.Y819Y 0.09 TCGA-37-4130-01 7 155301677 155301677 C A CNPY1 Missense_Mutation p.R19I 0.28 deleterious(0) probably_damaging(1) TCGA-37-4130-01 7 157926578 157926578 G C PTPRN2 Missense_Mutation p.S449R 0.18 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 7 18706001 18706001 G T HDAC9 Missense_Mutation p.V545F 0.62 deleterious(0.04) benign(0.009) TCGA-37-4130-01 7 21657308 21657308 C A DNAH11 Missense_Mutation p.D1394E 0.63 benign(0.007) TCGA-37-4130-01 7 21781661 21781661 G T DNAH11 Missense_Mutation p.R2684S 0.12 benign(0.109) TCGA-37-4130-01 7 26412226 26412226 C A SNX10 3'UTR 0.10 TCGA-37-4130-01 7 37889878 37889878 A C NME8 Missense_Mutation p.K4Q 0.17 deleterious(0) probably_damaging(0.972) TCGA-37-4130-01 7 40041612 40041612 G T CDK13 Missense_Mutation p.D779Y 0.64 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 7 42012081 42012081 G A GLI3 Missense_Mutation p.P653L 0.66 tolerated(0.32) probably_damaging(0.999) TCGA-37-4130-01 7 4308430 4308430 G T SDK1 3'UTR 0.13 TCGA-37-4130-01 7 51095906 51095906 T A COBL Missense_Mutation p.T963S 0.69 tolerated(0.24) benign(0.114) TCGA-37-4130-01 7 53103631 53103631 G C POM121L12 Silent p.P89P 0.62 TCGA-37-4130-01 7 5427368 5427368 C T TNRC18 Missense_Mutation p.G696D 0.77 possibly_damaging(0.726) TCGA-37-4130-01 7 55912327 55912327 G T SEPT14 Nonsense_Mutation p.S87* 0.70 TCGA-37-4130-01 7 56123371 56123371 C G CCT6A Missense_Mutation p.L131V 0.63 deleterious(0.02) benign(0.287) TCGA-37-4130-01 7 62752221 62752221 G T ZNF733P RNA 0.32 TCGA-37-4130-01 7 66548418 66548418 C T TYW1 Missense_Mutation p.H426Y 0.26 deleterious(0.01) benign(0.33) TCGA-37-4130-01 7 71175845 71175845 C A WBSCR17 Silent p.R534R 0.22 TCGA-37-4130-01 7 73245660 73245660 G A CLDN4 Silent p.S43S 0.34 TCGA-37-4130-01 7 73803546 73803546 G T CLIP2 Missense_Mutation p.G893C 0.24 deleterious(0.01) probably_damaging(1) TCGA-37-4130-01 7 75398917 75398917 C A CCL26 3'UTR 0.33 TCGA-37-4130-01 7 80457909 80457909 C A SEMA3C Missense_Mutation p.A86S 0.27 tolerated(0.17) benign(0.005) TCGA-37-4130-01 7 82544403 82544403 C T PCLO Missense_Mutation p.G4300E 0.24 unknown(0) TCGA-37-4130-01 7 83014671 83014671 C A SEMA3E Missense_Mutation p.R605L 0.30 deleterious(0) probably_damaging(0.927) TCGA-37-4130-01 7 87081023 87081023 C G ABCB4 Silent p.V208V 0.29 TCGA-37-4130-01 7 87175241 87175241 T C ABCB1 Missense_Mutation p.K609E 0.29 tolerated(0.29) benign(0.001) TCGA-37-4130-01 7 90042587 90042587 C T CLDN12 Silent p.C199C 0.03 TCGA-37-4130-01 7 91631421 91631421 A G AKAP9 Missense_Mutation p.I730M 0.32 benign(0.13) TCGA-37-4130-01 7 93055881 93055881 G C CALCR Silent p.R438R 0.24 TCGA-37-4130-01 7 95115359 95115359 A T ASB4 Nonsense_Mutation p.K26* 0.25 TCGA-37-4130-01 8 100779183 100779183 G T VPS13B Missense_Mutation p.G2436V 0.26 tolerated(0.36) benign(0.128) TCGA-37-4130-01 8 101074897 101074897 A T RGS22 Missense_Mutation p.L479Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 8 104225197 104225197 C A BAALC Missense_Mutation p.P71T 0.27 tolerated(0.55) benign(0.158) TCGA-37-4130-01 8 10465287 10465287 T A RP1L1 Missense_Mutation p.E2107D 0.37 unknown(0) TCGA-37-4130-01 8 10468857 10468857 C A RP1L1 Silent p.A917A 0.18 TCGA-37-4130-01 8 104897577 104897577 G T RIMS2 Missense_Mutation p.R250S 0.09 tolerated_low_confidence(0.15) benign(0.001) TCGA-37-4130-01 8 104897989 104897989 A T RIMS2 Missense_Mutation p.M388L 0.16 tolerated_low_confidence(1) possibly_damaging(0.706) TCGA-37-4130-01 8 104898225 104898225 A G RIMS2 Silent p.V466V 0.31 TCGA-37-4130-01 8 10583631 10583631 G - SOX7 Frame_Shift_Del p.G315Afs*8 0.50 TCGA-37-4130-01 8 106815355 106815355 T A ZFPM2 Silent p.P1015P 0.06 TCGA-37-4130-01 8 107773304 107773304 T C ABRA Silent p.Q369Q 0.12 TCGA-37-4130-01 8 110451147 110451147 A T PKHD1L1 Missense_Mutation p.K1261M 0.20 tolerated(0.09) possibly_damaging(0.855) TCGA-37-4130-01 8 110493768 110493768 C A PKHD1L1 Missense_Mutation p.P3145Q 0.26 deleterious(0) probably_damaging(0.914) TCGA-37-4130-01 8 113349858 113349858 G T CSMD3 Missense_Mutation p.P2252Q 0.10 tolerated(0.05) possibly_damaging(0.506) TCGA-37-4130-01 8 116426365 116426365 C G TRPS1 Missense_Mutation p.Q1257H 0.16 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-37-4130-01 8 121013949 121013949 G T DEPTOR Missense_Mutation p.V264L 0.12 tolerated(0.06) benign(0.327) TCGA-37-4130-01 8 121239525 121239525 G T COL14A1 Missense_Mutation p.V691F 0.31 deleterious(0) probably_damaging(1) TCGA-37-4130-01 8 121357802 121357802 G T COL14A1 Missense_Mutation p.G1693C 0.08 deleterious(0) probably_damaging(1) TCGA-37-4130-01 8 124382098 124382098 C A ATAD2 Missense_Mutation p.Q298H 0.18 deleterious(0) probably_damaging(0.984) TCGA-37-4130-01 8 124442274 124442274 G T WDYHV1 Splice_Site p.X78_splice 0.36 TCGA-37-4130-01 8 124790264 124790264 G T FAM91A1 Splice_Site p.X123_splice 0.15 TCGA-37-4130-01 8 124993016 124993016 G T FER1L6 Nonsense_Mutation p.E459* 0.14 TCGA-37-4130-01 8 125551279 125551279 G T TATDN1 Silent p.R3R 0.33 TCGA-37-4130-01 8 128753183 128753183 G T MYC Missense_Mutation p.Q448H 0.18 tolerated(0.39) probably_damaging(0.995) TCGA-37-4130-01 8 131146561 131146561 C A ASAP1 Missense_Mutation p.D400Y 0.29 deleterious(0) possibly_damaging(0.735) TCGA-37-4130-01 8 131797665 131797665 G A ADCY8 Silent p.T1039T 0.31 TCGA-37-4130-01 8 131859712 131859712 G T ADCY8 Missense_Mutation p.F820L 0.20 tolerated(0.68) benign(0) TCGA-37-4130-01 8 133637544 133637544 T C LRRC6 Silent p.K270K 0.09 TCGA-37-4130-01 8 139209831 139209831 C A FAM135B Missense_Mutation p.A251S 0.10 deleterious(0.04) benign(0.325) TCGA-37-4130-01 8 143784420 143784420 G T LY6K Intron 0.29 TCGA-37-4130-01 8 143996190 143996190 G A CYP11B2 Silent p.L244L 0.12 TCGA-37-4130-01 8 143996191 143996191 G T CYP11B2 Missense_Mutation p.S243R 0.12 tolerated(0.52) benign(0.049) TCGA-37-4130-01 8 145663880 145663880 G C TONSL Missense_Mutation p.R543G 0.10 tolerated(0.34) benign(0.013) TCGA-37-4130-01 8 145663881 145663881 C A TONSL Silent p.L542L 0.10 TCGA-37-4130-01 8 145773408 145773408 C A ARHGAP39 Silent p.R354R 0.59 TCGA-37-4130-01 8 15978005 15978005 G C MSR1 Missense_Mutation p.R382G 0.08 deleterious(0.01) benign(0.29) TCGA-37-4130-01 8 1881969 1881969 G T ARHGEF10 Missense_Mutation p.G1028V 0.12 deleterious(0.04) probably_damaging(0.993) TCGA-37-4130-01 8 2092738 2092738 G T MYOM2 Nonsense_Mutation p.E1411* 0.38 TCGA-37-4130-01 8 23423676 23423676 G T SLC25A37 Missense_Mutation p.G89V 0.19 tolerated(0.19) benign(0.281) TCGA-37-4130-01 8 24188796 24188796 C A ADAM28 Missense_Mutation p.Q413K 0.16 tolerated(0.81) benign(0.285) TCGA-37-4130-01 8 24775435 24775435 G T NEFM Missense_Mutation p.E689D 0.41 deleterious(0.02) probably_damaging(0.97) TCGA-37-4130-01 8 26366163 26366163 C G PNMA2 Missense_Mutation p.E37Q 0.15 deleterious(0.05) benign(0.123) TCGA-37-4130-01 8 27310662 27310662 G T PTK2B Silent p.P860P 0.12 TCGA-37-4130-01 8 2836286 2836286 G T CSMD1 Missense_Mutation p.A2805D 0.46 probably_damaging(0.913) TCGA-37-4130-01 8 28608427 28608427 G A EXTL3 3'UTR 0.14 TCGA-37-4130-01 8 30704354 30704354 T A TEX15 Missense_Mutation p.N727I 0.13 deleterious(0) probably_damaging(0.955) TCGA-37-4130-01 8 3200887 3200887 G C CSMD1 Missense_Mutation p.S1187C 0.29 probably_damaging(0.999) TCGA-37-4130-01 8 33406220 33406220 G T RNF122 3'UTR 0.45 TCGA-37-4130-01 8 33406999 33406999 T A RNF122 Silent p.A94A 0.15 TCGA-37-4130-01 8 37702358 37702358 G A BRF2 Missense_Mutation p.R304C 0.10 deleterious(0) probably_damaging(0.993) TCGA-37-4130-01 8 39613295 39613295 G T ADAM2 Missense_Mutation p.D583E 0.48 tolerated(1) benign(0.006) TCGA-37-4130-01 8 41791613 41791613 C G KAT6A Missense_Mutation p.E1375D 0.42 unknown(0) TCGA-37-4130-01 8 42587183 42587183 C A CHRNB3 Missense_Mutation p.L245M 0.46 deleterious(0.02) probably_damaging(1) TCGA-37-4130-01 8 48710947 48710947 C A PRKDC Missense_Mutation p.A3436S 0.18 benign(0.015) TCGA-37-4130-01 8 51415344 51415344 G C SNTG1 Missense_Mutation p.V124L 0.17 tolerated(1) benign(0.042) TCGA-37-4130-01 8 53084632 53084632 G C ST18 Silent p.L263L 0.14 TCGA-37-4130-01 8 53569028 53569028 C A RB1CC1 Missense_Mutation p.G1121C 0.41 deleterious_low_confidence(0) possibly_damaging(0.85) TCGA-37-4130-01 8 56663525 56663525 C A TMEM68 Missense_Mutation p.V229L 0.31 deleterious(0) probably_damaging(0.987) TCGA-37-4130-01 8 57026387 57026387 C A MOS Missense_Mutation p.W52L 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-37-4130-01 8 59059310 59059310 C A FAM110B Missense_Mutation p.P174Q 0.26 deleterious(0) possibly_damaging(0.45) TCGA-37-4130-01 8 62366725 62366725 G T CLVS1 Missense_Mutation p.G219V 0.21 deleterious(0) probably_damaging(0.988) TCGA-37-4130-01 8 69033262 69033262 G T PREX2 Missense_Mutation p.Q1234H 0.21 tolerated(0.17) benign(0.003) TCGA-37-4130-01 8 69129856 69129856 C A PREX2 Missense_Mutation p.T1537N 0.16 deleterious(0) probably_damaging(0.991) TCGA-37-4130-01 8 70539455 70539455 C T SULF1 Missense_Mutation p.L621F 0.08 tolerated(0.1) possibly_damaging(0.893) TCGA-37-4130-01 8 70971072 70971072 C A PRDM14 Missense_Mutation p.A397S 0.19 tolerated(0.5) benign(0.141) TCGA-37-4130-01 8 73848899 73848899 A T KCNB2 Missense_Mutation p.R437W 0.11 deleterious(0) probably_damaging(0.996) TCGA-37-4130-01 8 75737462 75737462 C T PI15 5'UTR 0.22 TCGA-37-4130-01 8 77745579 77745579 G T ZFHX4 Missense_Mutation p.A1111S 0.18 possibly_damaging(0.567) TCGA-37-4130-01 8 77761771 77761771 C T ZFHX4 Silent p.N1223N 0.09 TCGA-37-4130-01 8 77763120 77763120 A G ZFHX4 Splice_Site p.X1322_splice 0.11 TCGA-37-4130-01 8 77763130 77763130 C A ZFHX4 Missense_Mutation p.P1325T 0.19 possibly_damaging(0.803) TCGA-37-4130-01 8 77763131 77763131 C A ZFHX4 Missense_Mutation p.P1325Q 0.19 possibly_damaging(0.904) TCGA-37-4130-01 8 85774671 85774671 G T RALYL Missense_Mutation p.G198V 0.27 tolerated(0.21) benign(0.064) TCGA-37-4130-01 8 87111182 87111182 C A ATP6V0D2 5'UTR 0.14 TCGA-37-4130-01 8 87951940 87951940 C A CNBD1 Missense_Mutation p.A130D 0.38 tolerated(0.2) benign(0.01) TCGA-37-4130-01 8 88885244 88885244 G T DCAF4L2 Missense_Mutation p.P319H 0.35 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 8 93004035 93004035 G T RUNX1T1 Silent p.R286R 0.34 TCGA-37-4130-01 8 95539560 95539560 A C KIAA1429 Missense_Mutation p.D304E 0.17 tolerated(0.22) probably_damaging(0.998) TCGA-37-4130-01 8 97307434 97307434 C T PTDSS1 Missense_Mutation p.R184C 0.46 deleterious(0) probably_damaging(0.96) TCGA-37-4130-01 8 97614652 97614652 C T SDC2 Silent p.L68L 0.32 TCGA-37-4130-01 9 100056371 100056371 G T CCDC180 5'UTR 0.51 TCGA-37-4130-01 9 100117211 100117211 A T CCDC180 Missense_Mutation p.H1106L 0.48 deleterious(0.02) benign(0.402) TCGA-37-4130-01 9 107289146 107289146 A G OR13C4 Silent p.L115L 0.49 TCGA-37-4130-01 9 107367335 107367335 T A OR13C2 Missense_Mutation p.I192F 0.51 deleterious(0.01) benign(0.014) TCGA-37-4130-01 9 108510422 108510422 C T TMEM38B Missense_Mutation p.S204L 0.12 deleterious(0.01) possibly_damaging(0.493) TCGA-37-4130-01 9 109689060 109689060 C T ZNF462 Missense_Mutation p.A956V 0.53 probably_damaging(0.994) TCGA-37-4130-01 9 125652628 125652628 G - RC3H2 Frame_Shift_Del p.A183Lfs*10 0.47 TCGA-37-4130-01 9 13136711 13136711 C A MPDZ Missense_Mutation p.R1431I 0.25 deleterious(0.05) probably_damaging(0.997) TCGA-37-4130-01 9 136131089 136131089 C G RP11-430N14.4 5'Flank 0.45 TCGA-37-4130-01 9 139814911 139814911 G T TRAF2 Missense_Mutation p.A302S 0.58 deleterious(0.03) benign(0.068) TCGA-37-4130-01 9 140328801 140328801 G A NOXA1 Missense_Mutation p.D481N 0.11 tolerated_low_confidence(0.1) benign(0.013) TCGA-37-4130-01 9 141016503 141016503 G T CACNA1B 3'UTR 0.50 TCGA-37-4130-01 9 14845955 14845955 C T FREM1 Intron 0.40 TCGA-37-4130-01 9 32491365 32491365 T C DDX58 Missense_Mutation p.I209V 0.42 tolerated(1) benign(0.004) TCGA-37-4130-01 9 35404107 35404107 G T UNC13B 3'UTR 0.47 TCGA-37-4130-01 9 35845993 35845993 G C TMEM8B Missense_Mutation p.V101L 0.31 tolerated(0.37) benign(0.002) TCGA-37-4130-01 9 36344844 36344844 T A RNF38 Missense_Mutation p.Q457L 0.56 deleterious(0.04) benign(0.016) TCGA-37-4130-01 9 40715982 40715982 G C FAM74A3 RNA 0.30 TCGA-37-4130-01 9 43884942 43884942 T C CNTNAP3B Intron 0.38 TCGA-37-4130-01 9 4841242 4841242 C A RCL1 Missense_Mutation p.R199S 0.21 deleterious(0.01) possibly_damaging(0.837) TCGA-37-4130-01 9 5072627 5072627 G T JAK2 Splice_Site p.X592_splice 0.49 TCGA-37-4130-01 9 73461306 73461306 C T TRPM3 Missense_Mutation p.G222R 0.49 deleterious(0) possibly_damaging(0.818) TCGA-37-4130-01 9 79325701 79325701 C A PRUNE2 Missense_Mutation p.D497Y 0.59 deleterious(0) probably_damaging(1) TCGA-37-4130-01 9 84531572 84531572 C G SPATA31D5P RNA 0.42 TCGA-37-4130-01 9 87636280 87636280 C A NTRK2 Missense_Mutation p.N815K 0.46 deleterious(0.04) benign(0.144) TCGA-37-4130-01 X 101623497 101623497 C T NXF2B Missense_Mutation p.V227I 0.24 tolerated(0.37) benign(0.033) TCGA-37-4130-01 X 102192228 102192228 G T RAB40AL 5'UTR 0.69 TCGA-37-4130-01 X 102979129 102979129 A T GLRA4 Missense_Mutation p.L124Q 0.64 deleterious(0) probably_damaging(1) TCGA-37-4130-01 X 105279245 105279245 A G SERPINA7 Silent p.L252L 0.65 TCGA-37-4130-01 X 118723462 118723462 C A NKRF Missense_Mutation p.K657N 0.63 deleterious(0) probably_damaging(0.966) TCGA-37-4130-01 X 119660608 119660608 C A CUL4B 3'UTR 0.60 TCGA-37-4130-01 X 122387262 122387262 C A GRIA3 Missense_Mutation p.T126K 0.66 deleterious(0.02) benign(0.368) TCGA-37-4130-01 X 122802146 122802146 C T THOC2 Missense_Mutation p.C294Y 0.64 tolerated(0.08) benign(0.02) TCGA-37-4130-01 X 125685402 125685402 G T DCAF12L1 Missense_Mutation p.P397H 0.69 tolerated(0.26) benign(0.031) TCGA-37-4130-01 X 127185960 127185960 G C ACTRT1 Missense_Mutation p.R76G 0.66 deleterious(0.01) benign(0.047) TCGA-37-4130-01 X 12736804 12736804 C G FRMPD4 Missense_Mutation p.P1287A 0.62 tolerated_low_confidence(1) benign(0.04) TCGA-37-4130-01 X 129813529 129813529 G A ENOX2 Silent p.A178A 0.63 TCGA-37-4130-01 X 131219676 131219676 G T FRMD7 Missense_Mutation p.P193H 0.74 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 X 131228130 131228130 G T FRMD7 Missense_Mutation p.L108I 0.65 tolerated(0.41) benign(0.208) TCGA-37-4130-01 X 134993735 134993735 C T SAGE1 Intron 0.67 TCGA-37-4130-01 X 135630747 135630747 G T VGLL1 Splice_Site p.X72_splice 0.64 TCGA-37-4130-01 X 142967684 142967684 G T UBE2NL 3'UTR 0.60 TCGA-37-4130-01 X 150789414 150789414 G T PASD1 Missense_Mutation p.G74C 0.62 deleterious(0) probably_damaging(0.998) TCGA-37-4130-01 X 150789415 150789415 G A PASD1 Missense_Mutation p.G74D 0.63 tolerated(0.13) benign(0.234) TCGA-37-4130-01 X 151358347 151358347 G T GABRA3 Missense_Mutation p.A333E 0.71 deleterious(0) probably_damaging(1) TCGA-37-4130-01 X 151870263 151870263 C A MAGEA6 3'UTR 0.62 TCGA-37-4130-01 X 152113873 152113873 G T ZNF185 Missense_Mutation p.R456M 0.73 tolerated(0.07) possibly_damaging(0.882) TCGA-37-4130-01 X 152226457 152226457 G T PNMA3 Missense_Mutation p.G349W 0.59 deleterious(0.02) benign(0.01) TCGA-37-4130-01 X 153070587 153070587 G T PDZD4 Missense_Mutation p.R243S 0.61 tolerated(0.27) benign(0.002) TCGA-37-4130-01 X 153596033 153596033 C A FLNA Silent p.A232A 0.67 TCGA-37-4130-01 X 2407933 2407933 C T ZBED1 Silent p.V276V 0.08 TCGA-37-4130-01 X 26157898 26157898 C A MAGEB18 Missense_Mutation p.R266S 0.60 tolerated(0.27) benign(0.157) TCGA-37-4130-01 X 26213151 26213151 A T MAGEB6 Silent p.I396I 0.63 TCGA-37-4130-01 X 27766907 27766907 G T DCAF8L2 Nonstop_Mutation p.*632Lext*? 0.63 TCGA-37-4130-01 X 27998997 27998998 - G DCAF8L1 Frame_Shift_Ins p.R152Pfs*24 0.52 TCGA-37-4130-01 X 29973797 29973797 A T IL1RAPL1 Missense_Mutation p.N651Y 0.64 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-37-4130-01 X 36091294 36091294 A T CHDC2 Missense_Mutation p.S77C 0.63 tolerated(0.1) benign(0.025) TCGA-37-4130-01 X 46521576 46521576 G T SLC9A7 Missense_Mutation p.Q306K 0.58 tolerated(0.15) benign(0.098) TCGA-37-4130-01 X 46521577 46521577 G T SLC9A7 Nonsense_Mutation p.Y305* 0.58 TCGA-37-4130-01 X 47308441 47308441 C T ZNF41 Missense_Mutation p.C243Y 0.61 tolerated(0.71) benign(0.004) TCGA-37-4130-01 X 47464765 47464765 C G SYN1 Missense_Mutation p.D181H 0.42 deleterious(0) probably_damaging(0.998) TCGA-37-4130-01 X 52844166 52844166 G T XAGE5 Missense_Mutation p.D77Y 0.71 tolerated(0.1) probably_damaging(0.946) TCGA-37-4130-01 X 5827233 5827233 G - NLGN4X Frame_Shift_Del p.L225Wfs*24 0.53 TCGA-37-4130-01 X 595510 595510 C A SHOX Missense_Mutation p.F145L 0.47 deleterious(0.02) possibly_damaging(0.544) TCGA-37-4130-01 X 65392314 65392314 G T HEPH Missense_Mutation p.W149C 0.59 deleterious(0) probably_damaging(1) TCGA-37-4130-01 X 65412080 65412080 G T HEPH Missense_Mutation p.W445L 0.68 deleterious(0) probably_damaging(0.999) TCGA-37-4130-01 X 65412086 65412086 A T HEPH Missense_Mutation p.Y447F 0.72 deleterious(0.03) probably_damaging(0.998) TCGA-37-4130-01 X 73046088 73046088 C - XIST RNA 0.20 TCGA-37-4130-01 X 73063581 73063581 T A XIST RNA 0.68 TCGA-37-4130-01 X 73063995 73063995 C A XIST RNA 0.63 TCGA-37-4130-01 X 77912966 77912966 T A ZCCHC5 Missense_Mutation p.N318Y 0.65 deleterious(0) possibly_damaging(0.87) TCGA-37-4130-01 X 78426624 78426624 C T GPR174 Silent p.A40A 0.71 TCGA-37-4130-01 X 84526133 84526133 G C ZNF711 Missense_Mutation p.G529R 0.37 deleterious(0) probably_damaging(1) TCGA-37-4130-01 X 86869534 86869534 C A KLHL4 Missense_Mutation p.P230T 0.63 deleterious(0.01) probably_damaging(1) TCGA-37-4130-01 Y 14885708 14885708 A T USP9Y Missense_Mutation p.Q727L 0.72 deleterious(0.03) possibly_damaging(0.83) TCGA-37-4130-01 Y 16734015 16734015 G T NLGN4Y Nonsense_Mutation p.G6* 0.58 TCGA-37-4132-01 10 101802144 101802144 G T CPN1 3'UTR 0.33 TCGA-37-4132-01 10 112356174 112356174 G T SMC3 Missense_Mutation p.R661L 0.27 deleterious(0.01) probably_damaging(0.943) TCGA-37-4132-01 10 112839182 112839182 G C ADRA2A 3'UTR 0.25 TCGA-37-4132-01 10 114920409 114920409 G T TCF7L2 Silent p.L450L 0.40 TCGA-37-4132-01 10 118352055 118352055 T C PNLIPRP1 Splice_Site p.X110_splice 0.31 TCGA-37-4132-01 10 124594383 124594383 C G CUZD1 Missense_Mutation p.K407N 0.27 tolerated(0.69) benign(0.003) TCGA-37-4132-01 10 15702877 15702877 C A ITGA8 Splice_Site p.X297_splice 0.23 TCGA-37-4132-01 10 25701360 25701360 C A GPR158 Missense_Mutation p.D431E 0.32 tolerated(0.08) benign(0.433) TCGA-37-4132-01 10 45602588 45602588 T C RSU1P2 RNA 0.50 TCGA-37-4132-01 10 47086896 47086896 T G NPY4R Missense_Mutation p.V38G 0.12 tolerated(0.24) benign(0.008) TCGA-37-4132-01 10 47086898 47086898 G A NPY4R Missense_Mutation p.D39N 0.11 tolerated(0.53) benign(0.009) TCGA-37-4132-01 10 55955622 55955622 G C PCDH15 Missense_Mutation p.P376A 0.25 tolerated(0.05) probably_damaging(0.93) TCGA-37-4132-01 10 72614536 72614536 G T SGPL1 Missense_Mutation p.E111D 0.25 tolerated(0.57) benign(0) TCGA-37-4132-01 10 73500697 73500697 G C CDH23 Missense_Mutation p.S1541T 0.05 tolerated(0.15) possibly_damaging(0.888) TCGA-37-4132-01 10 76285041 76285041 T A ADK Missense_Mutation p.S195T 0.34 tolerated(0.13) benign(0.136) TCGA-37-4132-01 10 8116034 8116034 C T GATA3 3'UTR 0.33 TCGA-37-4132-01 10 87966289 87966289 G C GRID1 Missense_Mutation p.R118G 0.27 deleterious(0) probably_damaging(0.997) TCGA-37-4132-01 10 88123798 88123798 T A GRID1 Silent p.V45V 0.23 TCGA-37-4132-01 10 97397135 97397135 G A ALDH18A1 Missense_Mutation p.A121V 0.33 deleterious(0) probably_damaging(0.998) TCGA-37-4132-01 11 118983218 118983218 C T C2CD2L Missense_Mutation p.P371S 0.25 tolerated(0.42) benign(0.001) TCGA-37-4132-01 11 120352074 120352074 T C ARHGEF12 Missense_Mutation p.V1448A 0.08 tolerated_low_confidence(0.42) benign(0.001) TCGA-37-4132-01 11 120352075 120352075 G T ARHGEF12 Silent p.V1448V 0.09 TCGA-37-4132-01 11 122848523 122848523 G T BSX Missense_Mutation p.P179Q 0.12 tolerated(0.1) benign(0.014) TCGA-37-4132-01 11 122848524 122848524 G T BSX Missense_Mutation p.P179T 0.12 tolerated(0.09) benign(0.009) TCGA-37-4132-01 11 12316090 12316090 C T MICALCL Missense_Mutation p.P371L 0.13 deleterious(0) probably_damaging(0.992) TCGA-37-4132-01 11 123908884 123908884 G T OR10G7 Nonsense_Mutation p.Y275* 0.57 TCGA-37-4132-01 11 124740572 124740572 G T ROBO3 Silent p.V327V 0.37 TCGA-37-4132-01 11 1269173 1269173 G A MUC5B Missense_Mutation p.G3688E 0.20 unknown(0) TCGA-37-4132-01 11 47289549 47289549 G T NR1H3 Missense_Mutation p.L358F 0.14 deleterious(0) probably_damaging(0.999) TCGA-37-4132-01 11 55037996 55037996 C A TRIM48 3'UTR 0.27 TCGA-37-4132-01 11 55904827 55904827 T C OR8J3 Missense_Mutation p.Y123C 0.26 deleterious(0.02) benign(0.078) TCGA-37-4132-01 11 56086413 56086413 C T OR8K3 Missense_Mutation p.L211F 0.40 tolerated_low_confidence(0.07) benign(0.396) TCGA-37-4132-01 11 59282952 59282952 C G OR4D9 Missense_Mutation p.C189W 0.11 deleterious(0) probably_damaging(0.964) TCGA-37-4132-01 11 59837745 59837745 G T MS4A3 3'UTR 0.08 TCGA-37-4132-01 11 6023297 6023297 A G OR56A4 Missense_Mutation p.L361P 0.29 deleterious(0) probably_damaging(0.956) TCGA-37-4132-01 11 61323614 61323614 C A SYT7 Missense_Mutation p.V33F 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.742) TCGA-37-4132-01 11 62291311 62291311 C A AHNAK Missense_Mutation p.L3526F 0.28 probably_damaging(0.93) TCGA-37-4132-01 11 64453162 64453162 C T NRXN2 Missense_Mutation p.D370N 0.19 deleterious(0) benign(0.001) TCGA-37-4132-01 11 65404033 65404033 C T PCNXL3 Missense_Mutation p.P1922L 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.713) TCGA-37-4132-01 11 67288561 67288561 G T CABP2 Missense_Mutation p.A105D 0.50 tolerated(0.48) possibly_damaging(0.903) TCGA-37-4132-01 11 68747491 68747491 C T MRGPRD Silent p.%3D 0.51 TCGA-37-4132-01 11 74911347 74911347 C A SLCO2B1 Missense_Mutation p.L560M 0.22 deleterious(0.01) probably_damaging(1) TCGA-37-4132-01 11 76371646 76371646 G A LRRC32 Missense_Mutation p.P331S 0.19 deleterious(0.04) probably_damaging(0.988) TCGA-37-4132-01 11 76730790 76730790 A G ACER3 Silent p.T240T 0.24 TCGA-37-4132-01 11 84028360 84028360 C A DLG2 Intron 0.61 TCGA-37-4132-01 11 86778804 86778804 A G TMEM135 Silent p.Q70Q 0.36 TCGA-37-4132-01 11 89421788 89421788 G T FOLH1B RNA 0.21 TCGA-37-4132-01 11 89537317 89537317 G A TRIM49 Silent p.D107D 0.11 TCGA-37-4132-01 11 94603957 94603957 C T AMOTL1 Silent p.I956I 0.52 TCGA-37-4132-01 12 101711423 101711423 C T UTP20 Missense_Mutation p.T907M 0.08 deleterious(0.03) possibly_damaging(0.836) TCGA-37-4132-01 12 11138942 11138942 T C TAS2R50 Missense_Mutation p.H173R 0.35 tolerated(0.52) benign(0.012) TCGA-37-4132-01 12 113319645 113319645 C A RPH3A Silent p.A440A 0.22 TCGA-37-4132-01 12 124228341 124228341 G T ATP6V0A2 Missense_Mutation p.G350C 0.25 deleterious(0.01) benign(0.084) TCGA-37-4132-01 12 132281752 132281752 G T SFSWAP Missense_Mutation p.R907L 0.27 tolerated_low_confidence(0.14) unknown(0) TCGA-37-4132-01 12 14628827 14628827 G - ATF7IP Frame_Shift_Del p.G956Efs*30 0.16 TCGA-37-4132-01 12 26208295 26208295 G T RASSF8 Missense_Mutation p.V7L 0.25 deleterious(0) probably_damaging(0.989) TCGA-37-4132-01 12 2694593 2694593 G T CACNA1C Silent p.G797G 0.36 TCGA-37-4132-01 12 49230518 49230518 C A DDX23 Missense_Mutation p.W357L 0.31 deleterious(0) probably_damaging(0.999) TCGA-37-4132-01 12 51636342 51636342 G A DAZAP2 Missense_Mutation p.R177K 0.31 tolerated_low_confidence(0.25) possibly_damaging(0.567) TCGA-37-4132-01 12 52844188 52844188 A G KRT6B Splice_Site p.X252_splice 0.33 TCGA-37-4132-01 12 53208027 53208027 C T KRT4 5'UTR 0.28 TCGA-37-4132-01 12 53671337 53671337 C T ESPL1 Silent p.L723L 0.30 TCGA-37-4132-01 12 56091490 56091490 T C ITGA7 Silent p.A470A 0.30 TCGA-37-4132-01 12 57346661 57346661 C A RDH16 Missense_Mutation p.R229L 0.32 deleterious(0.02) benign(0.116) TCGA-37-4132-01 12 64808741 64808741 G T XPOT Missense_Mutation p.A39S 0.26 tolerated(0.12) benign(0.345) TCGA-37-4132-01 12 81799593 81799593 C A PPFIA2 Missense_Mutation p.M245I 0.21 tolerated(0.42) benign(0) TCGA-37-4132-01 13 101833585 101833585 C A NALCN Intron 0.27 TCGA-37-4132-01 13 43180928 43180928 C T TNFSF11 Silent p.N276N 0.46 TCGA-37-4132-01 13 49039374 49039374 C T RB1 Nonsense_Mutation p.R787* 0.44 TCGA-37-4132-01 13 53418820 53418820 C A PCDH8 Missense_Mutation p.V1030F 0.48 deleterious(0.04) possibly_damaging(0.571) TCGA-37-4132-01 13 70314671 70314671 C A KLHL1 Missense_Mutation p.G553C 0.31 deleterious(0) probably_damaging(1) TCGA-37-4132-01 13 72063281 72063281 C G DACH1 Splice_Site p.X526_splice 0.32 TCGA-37-4132-01 13 78474729 78474729 G C EDNRB Missense_Mutation p.P428A 0.16 deleterious(0) possibly_damaging(0.799) TCGA-37-4132-01 13 78492275 78492275 A T EDNRB Missense_Mutation p.L235Q 0.28 deleterious(0) probably_damaging(0.987) TCGA-37-4132-01 13 88328000 88328000 C T SLITRK5 Silent p.D119D 0.29 TCGA-37-4132-01 13 98828755 98828755 C A RNF113B Nonsense_Mutation p.G246* 0.34 TCGA-37-4132-01 13 98829259 98829259 C T RNF113B Missense_Mutation p.G78S 0.29 tolerated(0.74) benign(0.006) TCGA-37-4132-01 14 107170002 107170015 ATTTGTCCGCGGTA - IGHV1-69 Frame_Shift_Del p.T90Hfs*14 0.22 TCGA-37-4132-01 14 19553765 19553765 G A POTEG Missense_Mutation p.V117M 0.07 tolerated(0.07) benign(0.271) TCGA-37-4132-01 14 20248731 20248731 G T OR4M1 Missense_Mutation p.D84Y 0.17 deleterious(0) probably_damaging(0.963) TCGA-37-4132-01 14 20586177 20586177 G T OR4K17 Silent p.V204V 0.28 TCGA-37-4132-01 14 20774138 20774138 C A TTC5 5'UTR 0.31 TCGA-37-4132-01 14 21360396 21360396 C T RNASE3 3'UTR 0.28 TCGA-37-4132-01 14 21360397 21360397 C A RNASE3 3'UTR 0.28 TCGA-37-4132-01 14 24035116 24035116 G A AP1G2 Intron 0.29 TCGA-37-4132-01 14 37132158 37132158 C A PAX9 Missense_Mutation p.L21M 0.37 deleterious(0) probably_damaging(0.996) TCGA-37-4132-01 14 42373544 42373544 C A LRFN5 3'UTR 0.22 TCGA-37-4132-01 14 51464836 51464836 C A TRIM9 Missense_Mutation p.R512L 0.25 deleterious(0) probably_damaging(0.912) TCGA-37-4132-01 14 60076889 60076889 G C RTN1 Intron 0.33 TCGA-37-4132-01 14 62462630 62462630 A G SYT16 5'UTR 0.32 TCGA-37-4132-01 14 66975124 66975126 CTC - GPHN 5'UTR 0.21 TCGA-37-4132-01 14 73459935 73459935 C A ZFYVE1 Silent p.G373G 0.25 TCGA-37-4132-01 14 93301963 93301963 A G GOLGA5 Missense_Mutation p.M669V 0.29 tolerated(0.44) benign(0.097) TCGA-37-4132-01 14 94413827 94413827 G A ASB2 Missense_Mutation p.A307V 0.35 tolerated(0.06) possibly_damaging(0.893) TCGA-37-4132-01 14 94964719 94964719 C A SERPINA12 Missense_Mutation p.G6C 0.29 deleterious(0.04) probably_damaging(0.991) TCGA-37-4132-01 15 101529602 101529602 C A LRRK1 Missense_Mutation p.T254K 0.25 tolerated(0.91) benign(0.001) TCGA-37-4132-01 15 29398905 29398905 G C APBA2 Missense_Mutation p.M600I 0.26 tolerated(0.05) benign(0.25) TCGA-37-4132-01 15 34628908 34628908 T C SLC12A6 5'UTR 0.35 TCGA-37-4132-01 15 42162758 42162758 C A SPTBN5 Missense_Mutation p.Q1816H 0.17 probably_damaging(0.983) TCGA-37-4132-01 15 49620172 49620172 G T GALK2 Missense_Mutation p.R398L 0.21 deleterious(0) probably_damaging(1) TCGA-37-4132-01 15 50595181 50595181 G C GABPB1 Missense_Mutation p.T139S 0.37 tolerated(1) benign(0.055) TCGA-37-4132-01 15 52155127 52155127 G T TMOD3 Missense_Mutation p.D16Y 0.32 deleterious(0) probably_damaging(0.994) TCGA-37-4132-01 15 59813483 59813483 C A FAM81A Missense_Mutation p.S338Y 0.35 deleterious(0.01) possibly_damaging(0.866) TCGA-37-4132-01 15 74573027 74573027 G T CCDC33 Missense_Mutation p.W303L 0.28 deleterious(0.01) possibly_damaging(0.803) TCGA-37-4132-01 16 22268114 22268114 G T EEF2K Missense_Mutation p.G222C 0.26 deleterious(0) probably_damaging(0.988) TCGA-37-4132-01 16 23637655 23637655 C A PALB2 Nonsense_Mutation p.E884* 0.30 TCGA-37-4132-01 16 29675322 29675322 G A SPN Silent p.E91E 0.25 TCGA-37-4132-01 16 29853106 29853106 C A MVP Missense_Mutation p.R461S 0.16 deleterious(0.01) probably_damaging(0.982) TCGA-37-4132-01 16 30567039 30567039 C T ZNF764 Missense_Mutation p.E235K 0.38 tolerated(0.06) benign(0.107) TCGA-37-4132-01 16 3406651 3406651 G A OR2C1 Silent p.A237A 0.32 TCGA-37-4132-01 16 3929832 3929832 C A CREBBP Splice_Site p.X29_splice 0.28 TCGA-37-4132-01 16 3929833 3929833 C A CREBBP Missense_Mutation p.D29Y 0.28 possibly_damaging(0.465) TCGA-37-4132-01 16 49315383 49315383 G T CBLN1 5'UTR 0.33 TCGA-37-4132-01 16 56510115 56510124 TGACAGCACT - OGFOD1 Missense_Mutation 0.25 TCGA-37-4132-01 16 71419491 71419491 C A CALB2 Silent p.G213G 0.28 TCGA-37-4132-01 16 830124 830124 G - MSLNL Frame_Shift_Del p.A294Lfs*52 0.26 TCGA-37-4132-01 16 89603475 89603475 A T SPG7 Intron 0.20 TCGA-37-4132-01 16 90020757 90020757 G A DEF8 Missense_Mutation p.E94K 0.31 tolerated(0.39) benign(0.002) TCGA-37-4132-01 17 20319833 20319833 C T SRP68P3 RNA 0.30 TCGA-37-4132-01 17 26094816 26094816 G T NOS2 Silent p.I694I 0.21 TCGA-37-4132-01 17 28435000 28435000 T C EFCAB5 Silent p.Y1490Y 0.40 TCGA-37-4132-01 17 32690161 32690161 G A CCL1 Missense_Mutation p.A7V 0.31 tolerated(0.2) benign(0.415) TCGA-37-4132-01 17 32690194 32690194 G T CCL1 5'UTR 0.34 TCGA-37-4132-01 17 33521284 33521284 G T SLC35G3 Missense_Mutation p.H15N 0.24 deleterious(0.04) benign(0.05) TCGA-37-4132-01 17 37373152 37373152 G A STAC2 Missense_Mutation p.S166F 0.21 deleterious(0) benign(0.245) TCGA-37-4132-01 17 38457168 38457168 G A CDC6 Missense_Mutation p.M446I 0.34 deleterious(0.04) benign(0.027) TCGA-37-4132-01 17 45361889 45361889 T C ITGB3 Missense_Mutation p.Y148H 0.20 tolerated(0.08) possibly_damaging(0.752) TCGA-37-4132-01 17 47793612 47793612 C A FAM117A Missense_Mutation p.A326S 0.36 tolerated(1) benign(0.04) TCGA-37-4132-01 17 48603308 48603308 G T MYCBPAP Missense_Mutation p.A660S 0.33 tolerated(1) benign(0.012) TCGA-37-4132-01 17 56355441 56355441 C A MPO Silent p.P317P 0.28 TCGA-37-4132-01 17 61666545 61666545 G T DCAF7 3'UTR 0.26 TCGA-37-4132-01 17 67266866 67266866 T A ABCA5 Missense_Mutation p.N973I 0.31 deleterious(0) probably_damaging(0.999) TCGA-37-4132-01 17 73265494 73265494 C G MIF4GD Missense_Mutation p.V47L 0.27 tolerated_low_confidence(0.91) benign(0) TCGA-37-4132-01 17 73780811 73780811 G A UNK 5'Flank 0.22 TCGA-37-4132-01 17 7577547 7577547 C A TP53 Missense_Mutation p.G245V 0.38 deleterious(0) probably_damaging(1) TCGA-37-4132-01 17 76424700 76424700 G A DNAH17 Missense_Mutation p.T4159M 0.27 probably_damaging(0.992) TCGA-37-4132-01 18 13884544 13884544 T A MC2R 3'UTR 0.59 TCGA-37-4132-01 18 22804475 22804475 A T ZNF521 Missense_Mutation p.L1136Q 0.28 tolerated_low_confidence(0.66) benign(0.007) TCGA-37-4132-01 18 29172936 29172936 C A TTR Silent p.A49A 0.45 TCGA-37-4132-01 18 29340506 29340506 G A SLC25A52 Missense_Mutation p.A50V 0.36 deleterious(0) probably_damaging(0.998) TCGA-37-4132-01 18 56246983 56246983 G T ALPK2 Missense_Mutation p.A342E 0.28 deleterious(0) probably_damaging(0.974) TCGA-37-4132-01 18 56587771 56587771 G T ZNF532 Missense_Mutation p.R751I 0.28 deleterious(0) probably_damaging(0.91) TCGA-37-4132-01 18 59157878 59157878 C A CDH20 Missense_Mutation p.T31N 0.29 tolerated(0.56) benign(0.005) TCGA-37-4132-01 18 59854984 59854984 G - KIAA1468 Frame_Shift_Del p.G84Afs*25 0.25 TCGA-37-4132-01 18 67871387 67871387 C T RTTN Missense_Mutation p.G111E 0.32 deleterious(0.03) probably_damaging(0.911) TCGA-37-4132-01 18 77193580 77193580 C A NFATC1 Missense_Mutation p.P397T 0.28 tolerated(0.07) benign(0.434) TCGA-37-4132-01 19 10610498 10610498 C A KEAP1 Missense_Mutation p.R71L 0.48 deleterious(0.03) probably_damaging(1) TCGA-37-4132-01 19 20607642 20607642 A G ZNF826P RNA 0.53 TCGA-37-4132-01 19 33130080 33130080 C G ANKRD27 Intron 0.38 TCGA-37-4132-01 19 3496821 3496821 C G DOHH 5'UTR 0.44 TCGA-37-4132-01 19 38937371 38937371 G T RYR1 Missense_Mutation p.A255S 0.24 probably_damaging(0.999) TCGA-37-4132-01 19 38948725 38948725 G A RYR1 Missense_Mutation p.G654S 0.27 probably_damaging(0.987) TCGA-37-4132-01 19 38951157 38951157 G T RYR1 Missense_Mutation p.G835W 0.22 probably_damaging(0.934) TCGA-37-4132-01 19 39989875 39989875 G T DLL3 Missense_Mutation p.G38V 0.25 tolerated(0.39) probably_damaging(0.924) TCGA-37-4132-01 19 41056195 41056195 G A SPTBN4 Missense_Mutation p.G1546S 0.21 tolerated(0.7) benign(0.223) TCGA-37-4132-01 19 44273942 44273942 G C KCNN4 Missense_Mutation p.R287G 0.26 deleterious(0) possibly_damaging(0.81) TCGA-37-4132-01 19 44661956 44661956 A G ZNF234 Missense_Mutation p.Y596C 0.28 deleterious(0) probably_damaging(1) TCGA-37-4132-01 19 45494594 45494594 G T CLPTM1 Missense_Mutation p.W506C 0.26 deleterious(0) probably_damaging(0.984) TCGA-37-4132-01 19 50548006 50548006 A G ZNF473 Silent p.L102L 0.26 TCGA-37-4132-01 19 53270537 53270537 T C ZNF600 Missense_Mutation p.R158G 0.27 tolerated(0.26) benign(0.073) TCGA-37-4132-01 19 54394996 54394996 C T PRKCG Missense_Mutation p.L200F 0.28 deleterious(0.02) probably_damaging(0.968) TCGA-37-4132-01 19 54416252 54416252 C A CACNG7 Missense_Mutation p.A56D 0.26 deleterious(0) benign(0.155) TCGA-37-4132-01 19 56363717 56363717 G C NLRP4 Missense_Mutation p.E91Q 0.22 deleterious(0.01) probably_damaging(0.98) TCGA-37-4132-01 19 9049065 9049065 T A MUC16 Missense_Mutation p.S10856C 0.42 possibly_damaging(0.78) TCGA-37-4132-01 1 100736209 100736209 G A RTCA Missense_Mutation p.M142I 0.32 deleterious(0.04) possibly_damaging(0.511) TCGA-37-4132-01 1 145365347 145365347 A T NBPF10 Missense_Mutation p.R3324S 0.15 probably_damaging(0.909) TCGA-37-4132-01 1 147126328 147126328 T C ACP6 Missense_Mutation p.D254G 0.24 deleterious(0) probably_damaging(0.991) TCGA-37-4132-01 1 150307440 150307440 C T PRPF3 Missense_Mutation p.P255S 0.30 deleterious(0.01) possibly_damaging(0.598) TCGA-37-4132-01 1 153750763 153750763 G T SLC27A3 Missense_Mutation p.G477C 0.28 deleterious(0) probably_damaging(0.999) TCGA-37-4132-01 1 157738392 157738392 G C FCRL2 Missense_Mutation p.T232R 0.36 deleterious(0) probably_damaging(0.998) TCGA-37-4132-01 1 158943542 158943542 C T PYHIN1 Missense_Mutation p.P489S 0.25 possibly_damaging(0.641) TCGA-37-4132-01 1 159159596 159159596 C A CADM3 Missense_Mutation p.L42M 0.28 tolerated_low_confidence(0.2) possibly_damaging(0.82) TCGA-37-4132-01 1 159176010 159176010 G A DARC Missense_Mutation p.G263R 0.33 deleterious(0.04) probably_damaging(0.992) TCGA-37-4132-01 1 161199707 161199707 A G NR1I3 Silent p.Y318Y 0.38 TCGA-37-4132-01 1 161680583 161680583 C G FCRLA Missense_Mutation p.P61R 0.30 deleterious(0) possibly_damaging(0.822) TCGA-37-4132-01 1 16374477 16374477 G A CLCNKB Missense_Mutation p.A146T 0.35 deleterious(0) possibly_damaging(0.517) TCGA-37-4132-01 1 175046695 175046695 G C TNN Missense_Mutation p.K47N 0.29 deleterious(0.02) benign(0.071) TCGA-37-4132-01 1 178063829 178063829 G - RASAL2 Frame_Shift_Del 0.23 TCGA-37-4132-01 1 180023019 180023019 C T CEP350 Silent p.A1708A 0.32 TCGA-37-4132-01 1 183208626 183208626 C A LAMC2 Missense_Mutation p.S999R 0.30 deleterious(0.04) possibly_damaging(0.575) TCGA-37-4132-01 1 184688664 184688664 A G EDEM3 Silent p.P330P 0.29 TCGA-37-4132-01 1 186310179 186310179 C A TPR Missense_Mutation p.R1334L 0.30 benign(0.25) TCGA-37-4132-01 1 197030969 197030969 C G F13B Silent p.V132V 0.30 TCGA-37-4132-01 1 197404145 197404145 G T CRB1 Missense_Mutation p.W1051L 0.26 deleterious(0) probably_damaging(1) TCGA-37-4132-01 1 197404146 197404146 G T CRB1 Missense_Mutation p.W1051C 0.27 deleterious(0) probably_damaging(1) TCGA-37-4132-01 1 203148520 203148520 G A CHI3L1 3'UTR 0.40 TCGA-37-4132-01 1 204228417 204228417 G A PLEKHA6 Missense_Mutation p.R326W 0.23 deleterious(0) probably_damaging(0.999) TCGA-37-4132-01 1 206566215 206566215 A T SRGAP2 Missense_Mutation p.H133L 0.10 tolerated(0.63) benign(0.205) TCGA-37-4132-01 1 206906070 206906070 G T MAPKAPK2 3'UTR 0.37 TCGA-37-4132-01 1 213303010 213303010 G T RPS6KC1 Missense_Mutation p.G205W 0.38 deleterious(0.01) probably_damaging(0.994) TCGA-37-4132-01 1 226048615 226048615 G A TMEM63A Missense_Mutation p.L390F 0.32 deleterious(0) probably_damaging(1) TCGA-37-4132-01 1 234041484 234041484 C G SLC35F3 Missense_Mutation p.P88R 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-37-4132-01 1 234596084 234596084 G C TARBP1 Silent p.P486P 0.34 TCGA-37-4132-01 1 237666750 237666750 C G RYR2 Missense_Mutation p.P853R 0.29 probably_damaging(0.961) TCGA-37-4132-01 1 237787147 237787147 A T RYR2 Missense_Mutation p.H2000L 0.35 benign(0.085) TCGA-37-4132-01 1 242253060 242253060 C T PLD5 3'UTR 0.41 TCGA-37-4132-01 1 247607973 247607973 C G NLRP3 Missense_Mutation p.T954R 0.20 deleterious(0) probably_damaging(0.911) TCGA-37-4132-01 1 24768655 24768655 C G NIPAL3 Missense_Mutation p.F91L 0.30 deleterious(0) probably_damaging(0.946) TCGA-37-4132-01 1 248487386 248487386 G T OR2M7 Missense_Mutation p.A162E 0.30 tolerated(0.06) benign(0.054) TCGA-37-4132-01 1 248637548 248637548 C A OR2T3 Missense_Mutation p.N299K 0.15 deleterious(0) benign(0.248) TCGA-37-4132-01 1 35656498 35656498 G T SFPQ Silent p.A372A 0.30 TCGA-37-4132-01 1 63052180 63052180 G C DOCK7 Missense_Mutation p.P600A 0.31 deleterious(0.03) benign(0.028) TCGA-37-4132-01 1 71318317 71318317 T A PTGER3 3'UTR 0.33 TCGA-37-4132-01 1 75609634 75609634 G T LHX8 Splice_Site p.X238_splice 0.34 TCGA-37-4132-01 1 9324254 9324254 G T H6PD Missense_Mutation p.A568S 0.17 deleterious(0) probably_damaging(0.971) TCGA-37-4132-01 1 99767376 99767376 C A LPPR4 Silent p.R297R 0.31 TCGA-37-4132-01 20 13763772 13763772 T C ESF1 Silent p.Q5Q 0.27 TCGA-37-4132-01 20 29976952 29976952 C A DEFB119 Missense_Mutation p.R48L 0.36 deleterious(0.01) probably_damaging(0.941) TCGA-37-4132-01 20 36770518 36770518 A T TGM2 Missense_Mutation p.Y315N 0.32 tolerated(0.31) benign(0.441) TCGA-37-4132-01 20 43385668 43385668 G A RIMS4 Silent p.I155I 0.31 TCGA-37-4132-01 20 43881030 43881030 C A SLPI 3'UTR 0.17 TCGA-37-4132-01 20 62369609 62369609 G A LIME1 Silent p.Q114Q 0.27 TCGA-37-4132-01 20 7964463 7964463 T A TMX4 Silent p.P219P 0.25 TCGA-37-4132-01 20 826104 826104 G T FAM110A Missense_Mutation p.L219F 0.31 deleterious(0.03) probably_damaging(0.974) TCGA-37-4132-01 21 10914379 10914379 G T TPTE Nonsense_Mutation p.S447* 0.10 TCGA-37-4132-01 21 22746200 22746200 C A NCAM2 Silent p.I354I 0.29 TCGA-37-4132-01 22 21328120 21328120 C A AIFM3 Missense_Mutation p.H107N 0.38 tolerated(0.82) benign(0.137) TCGA-37-4132-01 22 22930894 22930894 C A IGLV2-33 Missense_Mutation p.S30Y 0.50 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-37-4132-01 22 25280092 25280092 C G SGSM1 Missense_Mutation p.S578C 0.44 deleterious(0) benign(0.027) TCGA-37-4132-01 22 42385581 42385581 C G SEPT3 Missense_Mutation p.L188V 0.47 deleterious(0.03) benign(0.377) TCGA-37-4132-01 22 50297581 50297581 T C ALG12 Missense_Mutation p.T458A 0.42 benign(0.003) TCGA-37-4132-01 2 107050690 107050690 G C RGPD3 Silent p.V733V 0.18 TCGA-37-4132-01 2 135095924 135095924 A G MGAT5 Missense_Mutation p.D247G 0.30 tolerated(0.36) benign(0.006) TCGA-37-4132-01 2 136558380 136558380 C T LCT Splice_Site p.X1555_splice 0.25 TCGA-37-4132-01 2 136566372 136566372 G T LCT Missense_Mutation p.A1182D 0.32 tolerated(0.13) benign(0.022) TCGA-37-4132-01 2 144764897 144764897 C A GTDC1 Nonsense_Mutation p.E243* 0.27 TCGA-37-4132-01 2 144764898 144764898 C A GTDC1 Missense_Mutation p.Q242H 0.27 tolerated_low_confidence(0.12) benign(0.002) TCGA-37-4132-01 2 149248097 149248097 G A MBD5 Nonsense_Mutation p.W1399* 0.31 TCGA-37-4132-01 2 155307127 155307127 G A GALNT13 3'UTR 0.29 TCGA-37-4132-01 2 163055354 163055354 C T FAP Missense_Mutation p.V439I 0.27 tolerated(0.49) benign(0.001) TCGA-37-4132-01 2 166535366 166535366 G C CSRNP3 Silent p.T287T 0.27 TCGA-37-4132-01 2 179452257 179452257 T C TTN Missense_Mutation p.N21260S 0.28 TCGA-37-4132-01 2 179585718 179585718 G T TTN Missense_Mutation p.S7676R 0.28 TCGA-37-4132-01 2 182413567 182413567 C A CERKL Missense_Mutation p.D331Y 0.19 deleterious(0) probably_damaging(1) TCGA-37-4132-01 2 196774786 196774786 C A DNAH7 Missense_Mutation p.G1357W 0.25 deleterious(0) probably_damaging(1) TCGA-37-4132-01 2 202589160 202589160 C T ALS2 Missense_Mutation p.E1124K 0.29 deleterious(0) benign(0.378) TCGA-37-4132-01 2 216198177 216198177 A G ATIC Missense_Mutation p.R307G 0.32 deleterious(0.04) possibly_damaging(0.891) TCGA-37-4132-01 2 220047290 220047290 G T FAM134A Missense_Mutation p.G524V 0.28 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-37-4132-01 2 220150644 220150644 G A DNAJB2 3'UTR 0.31 TCGA-37-4132-01 2 224463256 224463256 C A SCG2 Missense_Mutation p.D249Y 0.32 deleterious(0) probably_damaging(1) TCGA-37-4132-01 2 234357878 234357878 A G DGKD Missense_Mutation p.S582G 0.28 tolerated(0.34) benign(0) TCGA-37-4132-01 2 241569413 241569413 G T GPR35 Missense_Mutation p.W46L 0.24 tolerated(0.75) benign(0.022) TCGA-37-4132-01 2 27549524 27549524 A C GTF3C2 3'UTR 0.41 TCGA-37-4132-01 2 50149166 50149166 C T NRXN1 Silent p.G1520G 0.30 TCGA-37-4132-01 2 54853295 54853295 G T SPTBN1 Missense_Mutation p.R523L 0.34 deleterious(0) probably_damaging(0.932) TCGA-37-4132-01 2 56420351 56420351 T C CCDC85A Missense_Mutation p.L339P 0.31 deleterious_low_confidence(0.03) probably_damaging(0.949) TCGA-37-4132-01 2 68805035 68805035 G A APLF Missense_Mutation p.E473K 0.26 deleterious(0.04) probably_damaging(0.929) TCGA-37-4132-01 2 7001401 7001401 A G CMPK2 Silent p.I302I 0.31 TCGA-37-4132-01 2 79385540 79385540 C A REG3A Missense_Mutation p.G82V 0.22 tolerated(0.08) benign(0.021) TCGA-37-4132-01 2 79385541 79385541 C A REG3A Missense_Mutation p.G82W 0.21 deleterious(0) possibly_damaging(0.823) TCGA-37-4132-01 2 99688293 99688293 C A TSGA10 Missense_Mutation p.R328I 0.33 tolerated(0.06) benign(0.174) TCGA-37-4132-01 3 113115550 113115550 T A WDR52 Missense_Mutation p.I532F 0.25 deleterious(0) possibly_damaging(0.864) TCGA-37-4132-01 3 130202985 130202985 G A COL6A5 3'UTR 0.23 TCGA-37-4132-01 3 132191999 132191999 A G DNAJC13 Missense_Mutation p.Q740R 0.25 tolerated(0.08) benign(0.025) TCGA-37-4132-01 3 140401754 140401754 G T TRIM42 Missense_Mutation p.K264N 0.46 tolerated(0.07) benign(0.004) TCGA-37-4132-01 3 148596498 148596498 G T CPA3 Missense_Mutation p.G146V 0.17 deleterious(0) probably_damaging(0.982) TCGA-37-4132-01 3 179448483 179448483 A G USP13 Missense_Mutation p.K414E 0.16 tolerated(0.49) benign(0.13) TCGA-37-4132-01 3 186330942 186330942 C A AHSG Silent p.L4L 0.14 TCGA-37-4132-01 3 186330943 186330943 G T AHSG Missense_Mutation p.V5F 0.14 deleterious(0) probably_damaging(0.94) TCGA-37-4132-01 3 186330987 186330987 C A AHSG Silent p.A19A 0.16 TCGA-37-4132-01 3 38289220 38289220 T C OXSR1 Missense_Mutation p.L440S 0.39 deleterious(0.01) possibly_damaging(0.58) TCGA-37-4132-01 3 39226258 39226258 G T XIRP1 Missense_Mutation p.S1560Y 0.43 deleterious(0) probably_damaging(0.997) TCGA-37-4132-01 3 48600286 48600286 C G UCN2 Missense_Mutation p.R91P 0.33 deleterious(0.01) benign(0.014) TCGA-37-4132-01 3 51426513 51426513 A C MANF Missense_Mutation p.D181A 0.27 deleterious(0.01) possibly_damaging(0.867) TCGA-37-4132-01 4 114275855 114275855 T G ANK2 Silent p.V2027V 0.34 TCGA-37-4132-01 4 114279865 114279865 T C ANK2 Missense_Mutation p.L3364P 0.33 benign(0.007) TCGA-37-4132-01 4 122301525 122301525 A T QRFPR Missense_Mutation p.L93H 0.28 deleterious(0) probably_damaging(0.98) TCGA-37-4132-01 4 13338833 13338833 C T HSP90AB2P RNA 0.40 TCGA-37-4132-01 4 155507715 155507715 G A FGA Missense_Mutation p.P289L 0.30 tolerated(0.06) possibly_damaging(0.713) TCGA-37-4132-01 4 162577492 162577492 C A FSTL5 Missense_Mutation p.L294F 0.17 deleterious(0.02) probably_damaging(0.993) TCGA-37-4132-01 4 164393868 164393868 A T TKTL2 Missense_Mutation p.I340N 0.28 deleterious(0) probably_damaging(0.999) TCGA-37-4132-01 4 16504278 16504278 C A LDB2 Missense_Mutation p.Q370H 0.30 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-37-4132-01 4 178881979 178881979 G A LINC01098 5'UTR 0.24 TCGA-37-4132-01 4 183721165 183721165 C A TENM3 Missense_Mutation p.N2587K 0.24 deleterious(0.02) possibly_damaging(0.832) TCGA-37-4132-01 4 186284701 186284701 C G SNX25 3'UTR 0.33 TCGA-37-4132-01 4 188924335 188924335 A T ZFP42 Missense_Mutation p.K125I 0.26 deleterious(0.01) possibly_damaging(0.641) TCGA-37-4132-01 4 3432136 3432136 T C RGS12 Missense_Mutation p.F1190L 0.28 tolerated(0.35) benign(0.33) TCGA-37-4132-01 4 4285433 4285433 C A LYAR Missense_Mutation p.V13L 0.34 tolerated(0.66) benign(0.103) TCGA-37-4132-01 4 46252468 46252468 C A GABRA2 Missense_Mutation p.A405S 0.30 tolerated(0.5) benign(0.014) TCGA-37-4132-01 4 521020 521020 G T PIGG Splice_Site p.X754_splice 0.25 TCGA-37-4132-01 4 62845336 62845336 T C LPHN3 Missense_Mutation p.L886S 0.31 tolerated(0.27) possibly_damaging(0.846) TCGA-37-4132-01 4 6863776 6863776 A C KIAA0232 Missense_Mutation p.D556A 0.32 deleterious(0) probably_damaging(0.999) TCGA-37-4132-01 4 6865738 6865738 G T KIAA0232 Missense_Mutation p.C1210F 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-37-4132-01 4 72623796 72623796 C G GC Missense_Mutation p.C284S 0.27 deleterious(0) probably_damaging(1) TCGA-37-4132-01 4 87730951 87730951 G A PTPN13 Silent p.L2376L 0.34 TCGA-37-4132-01 4 89744229 89744229 C A FAM13A Intron 0.33 TCGA-37-4132-01 5 109065046 109065046 G T MAN2A1 Missense_Mutation p.W180L 0.45 deleterious(0) probably_damaging(1) TCGA-37-4132-01 5 112173578 112173578 G T APC Nonsense_Mutation p.E763* 0.47 TCGA-37-4132-01 5 131705707 131705707 G A SLC22A5 Missense_Mutation p.G15R 0.10 deleterious(0.02) possibly_damaging(0.857) TCGA-37-4132-01 5 13922416 13922416 C G DNAH5 Missense_Mutation p.D154H 0.32 possibly_damaging(0.861) TCGA-37-4132-01 5 140202733 140202733 A T PCDHA5 Missense_Mutation p.Q458L 0.50 deleterious_low_confidence(0.04) benign(0.001) TCGA-37-4132-01 5 148406934 148406934 C - SH3TC2 Frame_Shift_Del p.Q788Sfs*21 0.38 TCGA-37-4132-01 5 174103 174103 G C PLEKHG4B Missense_Mutation p.R1075P 0.32 deleterious(0) probably_damaging(0.999) TCGA-37-4132-01 5 33577068 33577068 G A ADAMTS12 Silent p.P1021P 0.28 TCGA-37-4132-01 5 42700057 42700057 G T GHR Nonsense_Mutation p.E191* 0.21 TCGA-37-4132-01 5 5182382 5182382 C A ADAMTS16 Missense_Mutation p.P243T 0.27 tolerated(0.64) benign(0.004) TCGA-37-4132-01 5 63894207 63894207 G A RGS7BP Missense_Mutation p.M209I 0.40 deleterious_low_confidence(0.01) unknown(0) TCGA-37-4132-01 5 64447760 64447760 A G ADAMTS6 Missense_Mutation p.V1086A 0.42 tolerated(0.09) possibly_damaging(0.819) TCGA-37-4132-01 5 6668425 6668425 G T SRD5A1 3'UTR 0.23 TCGA-37-4132-01 5 83239244 83239244 C T EDIL3 Silent p.E479E 0.49 TCGA-37-4132-01 5 87498879 87498879 T C TMEM161B Missense_Mutation p.I272V 0.44 tolerated(1) benign(0.01) TCGA-37-4132-01 5 89924648 89924654 AGGTATA - GPR98 Splice_Site p.X503_splice 0.21 TCGA-37-4132-01 6 102503300 102503300 G C GRIK2 Missense_Mutation p.G803R 0.08 deleterious(0) probably_damaging(0.956) TCGA-37-4132-01 6 112461045 112461045 C A LAMA4 Nonsense_Mutation p.E1007* 0.05 TCGA-37-4132-01 6 112461046 112461046 C A LAMA4 Silent p.L1006L 0.05 TCGA-37-4132-01 6 117201814 117201814 C A RFX6 Missense_Mutation p.A163E 0.11 deleterious(0) probably_damaging(0.999) TCGA-37-4132-01 6 129465088 129465088 C A LAMA2 Missense_Mutation p.P228T 0.49 tolerated(0.05) probably_damaging(0.977) TCGA-37-4132-01 6 132694057 132694057 C T MOXD1 Missense_Mutation p.R164K 0.10 deleterious(0.03) probably_damaging(0.99) TCGA-37-4132-01 6 147684625 147684625 A T STXBP5 Silent p.S900S 0.50 TCGA-37-4132-01 6 151247370 151247370 C T MTHFD1L Missense_Mutation p.R399C 0.07 tolerated(0.08) benign(0.013) TCGA-37-4132-01 6 163987080 163987080 G T QKI Intron 0.12 TCGA-37-4132-01 6 165848791 165848791 C T PDE10A Silent p.Q157Q 0.04 TCGA-37-4132-01 6 26501953 26501953 C T BTN1A1 Missense_Mutation p.P72L 0.09 tolerated(0.08) benign(0.027) TCGA-37-4132-01 6 31615610 31615610 G A BAG6 Silent p.Y188Y 0.08 TCGA-37-4132-01 6 31785450 31785450 G T HSPA1A Missense_Mutation p.E639D 0.54 deleterious_low_confidence(0.02) possibly_damaging(0.636) TCGA-37-4132-01 6 31914038 31914038 T - CFB Frame_Shift_Del p.F14Lfs*10 0.42 TCGA-37-4132-01 6 33647844 33647844 G T ITPR3 Missense_Mutation p.K1386N 0.59 deleterious(0.01) probably_damaging(0.993) TCGA-37-4132-01 6 38831811 38831811 C T DNAH8 Missense_Mutation p.P1941L 0.60 probably_damaging(0.94) TCGA-37-4132-01 6 47775971 47775971 C A OPN5 Missense_Mutation p.P280T 0.06 tolerated(0.13) possibly_damaging(0.683) TCGA-37-4132-01 6 49815935 49815935 C G CRISP1 Missense_Mutation p.E91D 0.42 tolerated(0.83) benign(0.022) TCGA-37-4132-01 6 56989571 56989571 G T ZNF451 Missense_Mutation p.D76Y 0.51 deleterious(0.01) probably_damaging(0.999) TCGA-37-4132-01 6 94066670 94066670 C A EPHA7 Silent p.V363V 0.50 TCGA-37-4132-01 7 107542825 107542825 G T DLD Missense_Mutation p.C85F 0.31 deleterious(0) probably_damaging(0.973) TCGA-37-4132-01 7 115580971 115580971 C A TFEC Missense_Mutation p.Q226H 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-37-4132-01 7 121513584 121513584 A T PTPRZ1 Missense_Mutation p.I11F 0.33 tolerated_low_confidence(0.22) benign(0.002) TCGA-37-4132-01 7 121636491 121636491 T C PTPRZ1 Silent p.L328L 0.33 TCGA-37-4132-01 7 121636492 121636492 C T PTPRZ1 Missense_Mutation p.L329F 0.33 deleterious(0) probably_damaging(1) TCGA-37-4132-01 7 129410258 129410258 C A MIR182 RNA 0.27 TCGA-37-4132-01 7 137792252 137792252 C T AKR1D1 Missense_Mutation p.R261C 0.29 deleterious(0.05) probably_damaging(1) TCGA-37-4132-01 7 141420856 141420856 G A WEE2 Missense_Mutation p.G294S 0.25 deleterious(0.02) possibly_damaging(0.627) TCGA-37-4132-01 7 142251115 142251115 C A TRBV6-4 Missense_Mutation p.C8F 0.34 tolerated(0.31) benign(0.017) TCGA-37-4132-01 7 142458443 142458443 G A PRSS1 Silent p.G26G 0.05 TCGA-37-4132-01 7 142563271 142563271 C G EPHB6 Missense_Mutation p.P330A 0.14 tolerated(0.81) benign(0.042) TCGA-37-4132-01 7 148487497 148487497 G T CUL1 Missense_Mutation p.L590F 0.31 deleterious(0) probably_damaging(0.977) TCGA-37-4132-01 7 149525744 149525744 G C SSPO RNA 0.31 TCGA-37-4132-01 7 150325051 150325051 A T GIMAP6 Missense_Mutation p.L212Q 0.31 deleterious(0) probably_damaging(0.997) TCGA-37-4132-01 7 151970876 151970876 G T KMT2C Missense_Mutation p.P309H 0.06 probably_damaging(1) TCGA-37-4132-01 7 24849496 24849496 C T OSBPL3 Silent p.R749R 0.36 TCGA-37-4132-01 7 2752534 2752534 T A AMZ1 3'UTR 0.42 TCGA-37-4132-01 7 2771071 2771071 T C GNA12 Missense_Mutation p.K297R 0.31 deleterious(0) probably_damaging(1) TCGA-37-4132-01 7 37960465 37960465 G T EPDR1 5'UTR 0.24 TCGA-37-4132-01 7 43360304 43360304 C A HECW1 Silent p.I141I 0.28 TCGA-37-4132-01 7 4794871 4794871 G T FOXK1 Nonsense_Mutation p.E303* 0.28 TCGA-37-4132-01 7 5391466 5391466 C A TNRC18 Missense_Mutation p.E1818D 0.28 benign(0.174) TCGA-37-4132-01 7 55914298 55914298 C G SEPT14 Silent p.T29T 0.40 TCGA-37-4132-01 7 57188011 57188011 G T ZNF479 Missense_Mutation p.H371N 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-37-4132-01 7 62751998 62751998 C T ZNF733P RNA 0.17 TCGA-37-4132-01 7 63538283 63538283 T G ZNF727 Missense_Mutation p.C286G 0.27 deleterious(0) probably_damaging(0.99) TCGA-37-4132-01 7 73097155 73097155 C A DNAJC30 Missense_Mutation p.G200V 0.27 deleterious(0.02) probably_damaging(0.952) TCGA-37-4132-01 7 76054366 76054366 C G ZP3 Missense_Mutation p.Q29E 0.32 tolerated(0.41) benign(0.002) TCGA-37-4132-01 8 108276455 108276455 T G ANGPT1 Missense_Mutation p.T444P 0.58 deleterious(0) probably_damaging(0.989) TCGA-37-4132-01 8 122641566 122641566 C T HAS2 Silent p.R5R 0.55 TCGA-37-4132-01 8 122641567 122641567 C A HAS2 Missense_Mutation p.R5M 0.55 deleterious(0.01) possibly_damaging(0.459) TCGA-37-4132-01 8 125072697 125072697 G C FER1L6 Intron 0.63 TCGA-37-4132-01 8 125463055 125463055 C T TRMT12 5'UTR 0.08 TCGA-37-4132-01 8 134233064 134233064 C A WISP1 Missense_Mutation p.P197H 0.15 tolerated(0.44) benign(0.045) TCGA-37-4132-01 8 139610989 139610989 T A COL22A1 Silent p.P1446P 0.13 TCGA-37-4132-01 8 144103018 144103018 A G LY6E Missense_Mutation p.T70A 0.58 tolerated(0.18) benign(0) TCGA-37-4132-01 8 144621479 144621479 C G ZC3H3 Missense_Mutation p.D20H 0.13 deleterious(0) probably_damaging(1) TCGA-37-4132-01 8 144733541 144733541 C A ZNF623 Missense_Mutation p.T500K 0.03 deleterious(0.02) benign(0.012) TCGA-37-4132-01 8 145773203 145773203 C T ARHGAP39 Missense_Mutation p.G423S 0.18 tolerated(0.42) benign(0.027) TCGA-37-4132-01 8 72981338 72981338 C A TRPA1 Missense_Mutation p.A122S 0.68 deleterious(0.01) probably_damaging(0.999) TCGA-37-4132-01 8 77761928 77761928 G T ZFHX4 Missense_Mutation p.V1276L 0.57 benign(0.198) TCGA-37-4132-01 8 77776453 77776453 C G ZFHX4 Silent p.T3501T 0.62 TCGA-37-4132-01 8 8197120 8197120 C T SGK223 Missense_Mutation p.D730N 0.46 probably_damaging(0.989) TCGA-37-4132-01 8 93088254 93088254 C A RUNX1T1 Intron 0.14 TCGA-37-4132-01 8 9619138 9619138 G T TNKS Missense_Mutation p.G1089V 0.45 deleterious(0) benign(0.357) TCGA-37-4132-01 9 107361074 107361074 T C OR13C5 Silent p.L207L 0.30 TCGA-37-4132-01 9 108118390 108118390 G T SLC44A1 Intron 0.39 TCGA-37-4132-01 9 119028236 119028236 G - PAPPA Frame_Shift_Del p.Y946Tfs*18 0.19 TCGA-37-4132-01 9 125512033 125512033 C T OR1L6 5'Flank 0.30 TCGA-37-4132-01 9 130536346 130536346 T A SH2D3C Silent p.V146V 0.23 TCGA-37-4132-01 9 18928965 18928965 T A FAM154A Missense_Mutation p.R170S 0.32 tolerated(0.26) probably_damaging(1) TCGA-37-4132-01 9 18928966 18928966 C A FAM154A Missense_Mutation p.R170I 0.32 deleterious(0) probably_damaging(1) TCGA-37-4132-01 9 34311097 34311097 A G KIF24 Missense_Mutation p.L83P 0.44 deleterious(0) possibly_damaging(0.812) TCGA-37-4132-01 9 36882073 36882073 C A PAX5 Missense_Mutation p.G314W 0.30 deleterious(0) probably_damaging(1) TCGA-37-4132-01 9 71006583 71006583 T A PGM5 Silent p.L277L 0.29 TCGA-37-4132-01 9 74329928 74329928 T C TMEM2 Missense_Mutation p.Y838C 0.31 tolerated(0.15) possibly_damaging(0.662) TCGA-37-4132-01 9 77632188 77632188 T C C9orf41 Missense_Mutation p.N136S 0.34 deleterious(0.05) possibly_damaging(0.459) TCGA-37-4132-01 9 84249057 84249057 C A TLE1 Missense_Mutation p.A178S 0.16 tolerated(0.17) benign(0.005) TCGA-37-4132-01 9 86403558 86403558 C G GKAP1 Missense_Mutation p.K132N 0.10 deleterious(0) possibly_damaging(0.897) TCGA-37-4132-01 9 95375364 95375364 G A CENPP Missense_Mutation p.G267E 0.29 tolerated(0.41) probably_damaging(0.982) TCGA-37-4132-01 X 109416710 109416710 G T TMEM164 3'UTR 0.52 TCGA-37-4132-01 X 114082761 114082761 C A HTR2C Missense_Mutation p.S182Y 0.52 deleterious(0.01) probably_damaging(0.999) TCGA-37-4132-01 X 129498688 129498688 G A SLC25A14 Silent p.L227L 0.46 TCGA-37-4132-01 X 140984804 140984804 A T MAGEC3 Silent p.S420S 0.42 TCGA-37-4132-01 X 148797924 148797924 T C MAGEA11 Missense_Mutation p.F260L 0.43 deleterious(0.03) probably_damaging(0.975) TCGA-37-4132-01 X 153209052 153209052 G A RENBP Silent p.F136F 0.50 TCGA-37-4132-01 X 153940891 153940891 G A GAB3 Nonsense_Mutation p.Q228* 0.41 TCGA-37-4132-01 X 1546837 1546837 G A ASMTL Silent p.I229I 0.06 TCGA-37-4132-01 X 17818515 17818515 T C RAI2 3'UTR 0.49 TCGA-37-4132-01 X 37027099 37027099 C A FAM47C Missense_Mutation p.P206T 0.42 deleterious(0.02) possibly_damaging(0.885) TCGA-37-4132-01 X 37027786 37027786 G A FAM47C Missense_Mutation p.G435R 0.44 tolerated_low_confidence(0.29) benign(0.014) TCGA-37-4132-01 X 43626734 43626734 C G MAOB Missense_Mutation p.R514S 0.55 tolerated(0.26) benign(0.001) TCGA-37-4132-01 X 67940905 67940905 A C STARD8 Missense_Mutation p.D730A 0.38 deleterious(0) probably_damaging(0.975) TCGA-37-4132-01 X 67940909 67940909 G A STARD8 Silent p.L731L 0.38 TCGA-37-4133-01 10 114061861 114061861 A T TECTB Missense_Mutation p.R304W 0.41 deleterious(0.01) benign(0.191) TCGA-37-4133-01 10 118307905 118307905 T A PNLIP Missense_Mutation p.S79T 0.28 deleterious(0.02) possibly_damaging(0.532) TCGA-37-4133-01 10 123845190 123845190 T C TACC2 Missense_Mutation p.C1059R 0.18 possibly_damaging(0.569) TCGA-37-4133-01 10 16858988 16858988 C T RSU1 Silent p.L31L 0.35 TCGA-37-4133-01 10 18689954 18689954 C A CACNB2 Intron 0.13 TCGA-37-4133-01 10 27702960 27702960 C A PTCHD3 Missense_Mutation p.A74S 0.42 tolerated_low_confidence(0.73) possibly_damaging(0.567) TCGA-37-4133-01 10 37440998 37440998 C - ANKRD30A Frame_Shift_Del p.P497Hfs*39 0.27 TCGA-37-4133-01 10 74034959 74034959 G - DDIT4 3'UTR 0.16 TCGA-37-4133-01 10 97951602 97951602 G C BLNK 3'UTR 0.30 TCGA-37-4133-01 10 98105612 98105612 C A OPALIN 3'UTR 0.43 TCGA-37-4133-01 11 102595586 102595586 T G MMP8 Translation_Start_Site p.M1? 0.04 deleterious_low_confidence(0) possibly_damaging(0.558) TCGA-37-4133-01 11 106810256 106810256 A G GUCY1A2 Missense_Mutation p.L379P 0.04 deleterious(0) probably_damaging(0.993) TCGA-37-4133-01 11 113848605 113848605 C A HTR3A Silent p.T66T 0.21 TCGA-37-4133-01 11 116734532 116734532 G C SIK3 Missense_Mutation p.S546C 0.22 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-37-4133-01 11 122650303 122650303 T A UBASH3B Nonsense_Mutation p.Y167* 0.22 TCGA-37-4133-01 11 123814150 123814150 A G OR6T1 Silent p.Y132Y 0.18 TCGA-37-4133-01 11 123886690 123886690 G T OR10G4 Missense_Mutation p.G137W 0.42 tolerated(0.22) probably_damaging(0.93) TCGA-37-4133-01 11 124623856 124623856 C A ESAM Nonsense_Mutation p.E287* 0.27 TCGA-37-4133-01 11 124765379 124765379 A T ROBO4 Missense_Mutation p.V337E 0.23 deleterious(0) probably_damaging(0.922) TCGA-37-4133-01 11 130784449 130784449 G A SNX19 Silent p.T462T 0.24 TCGA-37-4133-01 11 132290071 132290071 G T OPCML 3'UTR 0.39 TCGA-37-4133-01 11 16340072 16340072 C T SOX6 Missense_Mutation p.R122H 0.05 deleterious(0) probably_damaging(0.999) TCGA-37-4133-01 11 18380126 18380126 G C GTF2H1 Missense_Mutation p.G469A 0.40 tolerated(0.52) benign(0.012) TCGA-37-4133-01 11 27016253 27016253 C A FIBIN Missense_Mutation p.D60E 0.19 tolerated_low_confidence(0.27) benign(0.007) TCGA-37-4133-01 11 40136054 40136054 G T LRRC4C Missense_Mutation p.H597N 0.21 deleterious_low_confidence(0.02) benign(0.004) TCGA-37-4133-01 11 43283666 43283666 G A HNRNPKP3 RNA 0.25 TCGA-37-4133-01 11 4626667 4626667 A T TRIM68 Missense_Mutation p.L23Q 0.29 deleterious(0) probably_damaging(1) TCGA-37-4133-01 11 47597189 47597189 C T KBTBD4 Missense_Mutation p.E234K 0.26 tolerated(0.14) benign(0.017) TCGA-37-4133-01 11 56237459 56237459 A T OR5M3 Missense_Mutation p.I172N 0.23 deleterious(0.01) possibly_damaging(0.451) TCGA-37-4133-01 11 63990580 63990580 C T FERMT3 Silent p.I581I 0.20 TCGA-37-4133-01 11 6503551 6503551 G T TIMM10B 3'UTR 0.30 TCGA-37-4133-01 11 65660434 65660434 C T FOSL1 Missense_Mutation p.A247T 0.09 deleterious(0) possibly_damaging(0.746) TCGA-37-4133-01 11 67926107 67926107 G T SUV420H1 Missense_Mutation p.T569K 0.49 tolerated_low_confidence(0.46) benign(0.031) TCGA-37-4133-01 11 70178186 70178186 G C PPFIA1 Missense_Mutation p.A400P 0.43 deleterious(0) probably_damaging(0.978) TCGA-37-4133-01 11 7083729 7083729 G T NLRP14 Missense_Mutation p.R990S 0.26 tolerated(0.1) benign(0.062) TCGA-37-4133-01 11 86519229 86519229 A T PRSS23 Missense_Mutation p.T182S 0.21 tolerated(0.07) benign(0.008) TCGA-37-4133-01 11 89896501 89896501 C A NAALAD2 Missense_Mutation p.H367N 0.24 deleterious(0) probably_damaging(1) TCGA-37-4133-01 12 107080755 107080755 C A RFX4 Silent p.G166G 0.41 TCGA-37-4133-01 12 111758477 111758477 C T CUX2 Silent p.Y888Y 0.25 TCGA-37-4133-01 12 120567262 120567262 C T GCN1L1 Missense_Mutation p.A2570T 0.23 possibly_damaging(0.521) TCGA-37-4133-01 12 120587435 120587435 C T GCN1L1 Silent p.E1507E 0.13 TCGA-37-4133-01 12 121132908 121132908 A G MLEC Missense_Mutation p.D201G 0.02 deleterious(0) probably_damaging(1) TCGA-37-4133-01 12 125473500 125473500 G T DHX37 Silent p.G23G 0.36 TCGA-37-4133-01 12 130831046 130831046 C A PIWIL1 Missense_Mutation p.L150I 0.26 deleterious(0.04) probably_damaging(0.997) TCGA-37-4133-01 12 21391925 21391925 G C SLCO1B1 Missense_Mutation p.L626F 0.41 tolerated(0.27) benign(0.012) TCGA-37-4133-01 12 21919054 21919054 A G KCNJ8 Missense_Mutation p.I293T 0.49 deleterious(0) probably_damaging(0.991) TCGA-37-4133-01 12 4627411 4627411 C A C12orf4 Missense_Mutation p.L282F 0.50 deleterious(0.01) probably_damaging(0.985) TCGA-37-4133-01 12 49412534 49412534 G A PRKAG1 5'UTR 0.61 TCGA-37-4133-01 12 49420841 49420841 C A KMT2D Nonsense_Mutation p.E4970* 0.49 TCGA-37-4133-01 12 51079640 51079640 T G DIP2B Missense_Mutation p.F448V 0.22 deleterious(0) possibly_damaging(0.572) TCGA-37-4133-01 12 52715021 52715021 G T KRT83 Silent p.T33T 0.21 TCGA-37-4133-01 12 56629076 56629077 TT - SLC39A5 Frame_Shift_Del p.C258Wfs*124 0.18 TCGA-37-4133-01 12 6131144 6131144 C T VWF Missense_Mutation p.C1199Y 0.20 deleterious(0) possibly_damaging(0.831) TCGA-37-4133-01 12 72388230 72388230 A G TPH2 Missense_Mutation p.H318R 0.27 deleterious(0) probably_damaging(0.987) TCGA-37-4133-01 12 82872926 82872926 T G METTL25 3'UTR 0.67 TCGA-37-4133-01 12 86272120 86272120 C G NTS Intron 0.26 TCGA-37-4133-01 12 86272219 86272219 G A NTS Missense_Mutation p.V78I 0.30 tolerated(0.3) benign(0.002) TCGA-37-4133-01 12 98987856 98987856 C G SLC25A3 Missense_Mutation p.P34A 0.30 tolerated(0.42) benign(0) TCGA-37-4133-01 13 25000673 25000673 C T PARP4 Missense_Mutation p.R1637H 0.36 tolerated(0.07) possibly_damaging(0.877) TCGA-37-4133-01 13 33223009 33223009 C T PDS5B Nonsense_Mutation p.R34* 0.21 TCGA-37-4133-01 13 52605381 52605381 G T UTP14C 3'UTR 0.60 TCGA-37-4133-01 13 93518682 93518682 G T GPC5 Missense_Mutation p.G570V 0.60 tolerated_low_confidence(0.43) benign(0.002) TCGA-37-4133-01 14 20389500 20389500 A G OR4K5 Silent p.A245A 0.66 TCGA-37-4133-01 14 29237227 29237227 G A FOXG1 Missense_Mutation p.D248N 0.74 deleterious(0.02) probably_damaging(1) TCGA-37-4133-01 14 36018383 36018383 T G RALGAPA1 Silent p.T2012T 0.39 TCGA-37-4133-01 14 59930635 59930635 C T GPR135 Missense_Mutation p.R437Q 0.61 deleterious(0.01) possibly_damaging(0.9) TCGA-37-4133-01 14 63842716 63842716 C T PPP2R5E 3'UTR 0.66 TCGA-37-4133-01 14 65203602 65203602 C T PLEKHG3 Silent p.N403N 0.60 TCGA-37-4133-01 14 79746834 79746834 T C NRXN3 Intron 0.17 TCGA-37-4133-01 14 81743259 81743259 G C STON2 Missense_Mutation p.P799R 0.80 deleterious(0) probably_damaging(1) TCGA-37-4133-01 14 92088265 92088265 A G CATSPERB Silent p.F649F 0.36 TCGA-37-4133-01 14 94935676 94935676 G T SERPINA9 Missense_Mutation p.P186T 0.13 tolerated(0.39) benign(0.002) TCGA-37-4133-01 14 95081219 95081219 C T SERPINA3 Silent p.L147L 0.16 TCGA-37-4133-01 14 95670677 95670677 T G CLMN Missense_Mutation p.T337P 0.15 deleterious(0.02) possibly_damaging(0.775) TCGA-37-4133-01 15 27188527 27188527 G A GABRA5 Missense_Mutation p.G348D 0.29 tolerated(0.07) benign(0.403) TCGA-37-4133-01 15 28600010 28600010 G C RP11-483E23.2 RNA 0.08 TCGA-37-4133-01 15 40933128 40933128 C G CASC5 Missense_Mutation p.P1927A 0.25 deleterious(0.04) possibly_damaging(0.753) TCGA-37-4133-01 15 49329785 49329785 T G SECISBP2L Intron 0.33 TCGA-37-4133-01 15 55912014 55912014 G T PRTG 3'UTR 0.50 TCGA-37-4133-01 15 86284378 86284378 G T AKAP13 Missense_Mutation p.E2574D 0.38 deleterious(0.01) possibly_damaging(0.784) TCGA-37-4133-01 15 92690227 92690227 G C SLCO3A1 Missense_Mutation p.C509S 0.26 deleterious(0) probably_damaging(0.999) TCGA-37-4133-01 16 10576141 10576141 C T ATF7IP2 3'UTR 0.21 TCGA-37-4133-01 16 19033051 19033051 C T TMC7 Silent p.L187L 0.23 TCGA-37-4133-01 16 24373168 24373168 G A CACNG3 Missense_Mutation p.R311H 0.21 deleterious(0) probably_damaging(0.999) TCGA-37-4133-01 16 28943299 28943299 G A CD19 5'UTR 0.37 TCGA-37-4133-01 16 29979362 29979362 A G TMEM219 Silent p.Q124Q 0.44 TCGA-37-4133-01 16 51171083 51171083 G T SALL1 Missense_Mutation p.N1305K 0.58 tolerated(0.11) probably_damaging(0.998) TCGA-37-4133-01 16 52473099 52473099 C A TOX3 3'UTR 0.51 TCGA-37-4133-01 16 53243469 53243469 G C CHD9 Missense_Mutation p.E510Q 0.12 benign(0.161) TCGA-37-4133-01 16 57991254 57991254 C A CNGB1 Missense_Mutation p.V289L 0.23 deleterious_low_confidence(0.02) benign(0.099) TCGA-37-4133-01 16 67318231 67318231 G T PLEKHG4 Silent p.A521A 0.38 TCGA-37-4133-01 16 70602973 70602973 G A SF3B3 Missense_Mutation p.E1065K 0.13 tolerated(0.09) benign(0.099) TCGA-37-4133-01 16 708258 708258 C T WDR90 Missense_Mutation p.P894S 0.07 deleterious(0.02) probably_damaging(0.994) TCGA-37-4133-01 16 74499645 74499645 G A GLG1 Silent p.L866L 0.42 TCGA-37-4133-01 16 74511410 74511410 C T GLG1 Missense_Mutation p.E617K 0.25 deleterious(0.03) probably_damaging(0.938) TCGA-37-4133-01 16 819471 819471 A C MSLNL Nonsense_Mutation p.L1040* 0.49 TCGA-37-4133-01 16 89977665 89977665 G A TCF25 3'UTR 0.09 TCGA-37-4133-01 17 10322230 10322230 C G MYH8 Missense_Mutation p.E110Q 0.66 tolerated(0.12) possibly_damaging(0.704) TCGA-37-4133-01 17 10408730 10408730 G T MYH1 Missense_Mutation p.T758N 0.72 tolerated(0.38) benign(0.01) TCGA-37-4133-01 17 17696440 17696440 G C RAI1 Missense_Mutation p.E60Q 0.73 tolerated(0.08) possibly_damaging(0.719) TCGA-37-4133-01 17 25937078 25937078 C T KSR1 Intron 0.19 TCGA-37-4133-01 17 37119293 37119293 C T FBXO47 5'UTR 0.16 TCGA-37-4133-01 17 38933103 38933104 - A KRT27 3'UTR 0.24 TCGA-37-4133-01 17 40451895 40451895 G A STAT5A Missense_Mutation p.R226H 0.15 deleterious(0) probably_damaging(0.997) TCGA-37-4133-01 17 42225981 42225981 G A C17orf53 Silent p.P270P 0.21 TCGA-37-4133-01 17 4624342 4624342 G A ARRB2 3'UTR 0.52 TCGA-37-4133-01 17 54428148 54428148 G C ANKFN1 Silent p.T73T 0.15 TCGA-37-4133-01 17 58260814 58260814 T C USP32 Missense_Mutation p.I1279V 0.55 tolerated(0.05) benign(0.247) TCGA-37-4133-01 17 66871872 66871872 T C ABCA8 Missense_Mutation p.Q1418R 0.10 tolerated(0.08) benign(0.111) TCGA-37-4133-01 17 7324849 7324849 C A SPEM1 Nonsense_Mutation p.Y285* 0.30 TCGA-37-4133-01 17 73512834 73512834 G T TSEN54 Nonsense_Mutation p.E22* 0.60 TCGA-37-4133-01 17 7578195 7578197 CAC - TP53 In_Frame_Del p.V218del 0.73 TCGA-37-4133-01 17 76795029 76795029 G A USP36 Silent p.T1067T 0.16 TCGA-37-4133-01 17 80828207 80828207 C T TBCD Missense_Mutation p.R476C 0.52 deleterious(0) probably_damaging(0.999) TCGA-37-4133-01 18 31320005 31320005 A C ASXL3 Silent p.S879S 0.09 TCGA-37-4133-01 18 31673472 31673472 T C NOL4 Silent p.E243E 0.23 TCGA-37-4133-01 18 43329865 43329865 C T SLC14A1 Silent p.N429N 0.41 TCGA-37-4133-01 18 48190555 48190555 A G MAPK4 Missense_Mutation p.N76S 0.27 deleterious(0) probably_damaging(0.989) TCGA-37-4133-01 18 56196470 56196470 G A ALPK2 Missense_Mutation p.A1785V 0.26 deleterious(0) possibly_damaging(0.867) TCGA-37-4133-01 18 56620813 56620813 A G ZNF532 Missense_Mutation p.S978G 0.22 tolerated(0.07) benign(0.003) TCGA-37-4133-01 19 10469918 10469918 C A TYK2 Missense_Mutation p.R703L 0.57 tolerated(0.06) benign(0.06) TCGA-37-4133-01 19 10602850 10602850 G C KEAP1 Missense_Mutation p.S243C 0.66 deleterious(0) probably_damaging(0.976) TCGA-37-4133-01 19 11304076 11304076 G A KANK2 Missense_Mutation p.T227I 0.17 tolerated(0.09) possibly_damaging(0.798) TCGA-37-4133-01 19 12848341 12848341 T G ASNA1 Missense_Mutation p.W8G 0.45 deleterious_low_confidence(0) unknown(0) TCGA-37-4133-01 19 16910814 16910814 T G NWD1 Missense_Mutation p.S1193A 0.12 tolerated(0.55) possibly_damaging(0.839) TCGA-37-4133-01 19 17085976 17085976 T C CPAMD8 Silent p.Q714Q 0.34 TCGA-37-4133-01 19 17720816 17720816 T C UNC13A Missense_Mutation p.K1582E 0.35 deleterious(0) probably_damaging(0.998) TCGA-37-4133-01 19 20828524 20828524 G A ZNF626 Silent p.T64T 0.52 TCGA-37-4133-01 19 22375821 22375821 G T ZNF676 Missense_Mutation p.P43T 0.28 deleterious(0.05) probably_damaging(0.981) TCGA-37-4133-01 19 24309055 24309055 G C ZNF254 Splice_Site p.X85_splice 0.05 TCGA-37-4133-01 19 33113383 33113383 G A ANKRD27 Missense_Mutation p.T591I 0.25 tolerated(0.14) benign(0.075) TCGA-37-4133-01 19 3586840 3586840 G A GIPC3 Missense_Mutation p.R147Q 0.68 tolerated(0.25) benign(0.124) TCGA-37-4133-01 19 38713068 38713068 C A DPF1 Missense_Mutation p.R103L 0.45 deleterious(0) possibly_damaging(0.82) TCGA-37-4133-01 19 41306706 41306706 C T EGLN2 Missense_Mutation p.R77W 0.22 deleterious_low_confidence(0.01) benign(0.101) TCGA-37-4133-01 19 44500911 44500911 C G ZNF155 Nonsense_Mutation p.S312* 0.25 TCGA-37-4133-01 19 50384664 50384664 A C TBC1D17 Silent p.A153A 0.16 TCGA-37-4133-01 19 51169587 51169587 T G SHANK1 Missense_Mutation p.K1877T 0.46 unknown(0) TCGA-37-4133-01 19 52076626 52076626 G T ZNF175 Missense_Mutation p.G15V 0.17 tolerated(0.08) benign(0.166) TCGA-37-4133-01 19 52660359 52660359 T C ZNF836 Missense_Mutation p.K193E 0.55 tolerated(0.09) benign(0.016) TCGA-37-4133-01 19 52869896 52869896 A G ZNF610 Missense_Mutation p.H422R 0.39 deleterious(0) probably_damaging(0.963) TCGA-37-4133-01 19 53994103 53994103 A T ZNF813 Missense_Mutation p.Q206L 0.22 tolerated(0.06) benign(0.068) TCGA-37-4133-01 19 55148333 55148333 A T LILRB1 3'UTR 0.44 TCGA-37-4133-01 19 55418006 55418006 C A NCR1 Missense_Mutation p.L66I 0.24 tolerated(0.54) benign(0.166) TCGA-37-4133-01 19 55493679 55493679 T G NLRP2 Missense_Mutation p.F205V 0.21 tolerated(0.16) benign(0.297) TCGA-37-4133-01 19 9267288 9267288 C G ZNF317 Missense_Mutation p.A9G 0.37 tolerated_low_confidence(0.12) benign(0.079) TCGA-37-4133-01 1 108681680 108681680 C A SLC25A24 Missense_Mutation p.A417S 0.15 tolerated(0.14) probably_damaging(0.909) TCGA-37-4133-01 1 115275301 115275301 C T CSDE1 Missense_Mutation p.R371H 0.06 deleterious(0) probably_damaging(0.998) TCGA-37-4133-01 1 14106310 14106310 A G PRDM2 Missense_Mutation p.T674A 0.46 benign(0.074) TCGA-37-4133-01 1 142713806 142713806 T A RP11-417J8.6 RNA 0.08 TCGA-37-4133-01 1 152193243 152193243 A T HRNR Missense_Mutation p.S288T 0.09 unknown(0) TCGA-37-4133-01 1 154966181 154966181 G A LENEP Missense_Mutation p.G33D 0.05 deleterious_low_confidence(0.01) probably_damaging(0.969) TCGA-37-4133-01 1 158613124 158613124 C T SPTA1 Missense_Mutation p.R1477H 0.11 tolerated(0.05) benign(0.016) TCGA-37-4133-01 1 158908901 158908901 G C PYHIN1 Missense_Mutation p.G148A 0.11 tolerated(0.32) benign(0.268) TCGA-37-4133-01 1 166039416 166039416 C A FAM78B 3'UTR 0.66 TCGA-37-4133-01 1 175086168 175086168 A G TNN Missense_Mutation p.Y738C 0.70 deleterious(0) probably_damaging(0.995) TCGA-37-4133-01 1 176563832 176563832 G T PAPPA2 Missense_Mutation p.W364C 0.15 deleterious(0) probably_damaging(1) TCGA-37-4133-01 1 17699703 17699703 C A PADI6 RNA 0.11 TCGA-37-4133-01 1 179993629 179993629 C T CEP350 Silent p.S1154S 0.13 TCGA-37-4133-01 1 183086726 183086726 G T LAMC1 Missense_Mutation p.R582L 0.68 tolerated(0.06) benign(0.431) TCGA-37-4133-01 1 196695983 196695983 T A CFH Missense_Mutation p.F717I 0.15 deleterious(0) possibly_damaging(0.607) TCGA-37-4133-01 1 204159850 204159850 G T KISS1 Missense_Mutation p.A60D 0.59 tolerated(0.12) probably_damaging(0.958) TCGA-37-4133-01 1 204951102 204951102 G A NFASC Silent p.G808G 0.06 TCGA-37-4133-01 1 216166470 216166470 C T USH2A Missense_Mutation p.E2233K 0.18 benign(0.045) TCGA-37-4133-01 1 216737638 216737638 A G ESRRG Missense_Mutation p.I274T 0.16 deleterious(0.05) possibly_damaging(0.658) TCGA-37-4133-01 1 234743448 234743448 G A IRF2BP2 Missense_Mutation p.P400L 0.13 tolerated(0.06) probably_damaging(0.982) TCGA-37-4133-01 1 237905620 237905620 G A RYR2 Missense_Mutation p.D3706N 0.10 benign(0.349) TCGA-37-4133-01 1 240975293 240975293 T A RGS7 Missense_Mutation p.E336V 0.03 deleterious(0) possibly_damaging(0.477) TCGA-37-4133-01 1 241262037 241262037 T C RGS7 Missense_Mutation p.Q35R 0.11 deleterious(0.01) probably_damaging(0.946) TCGA-37-4133-01 1 241757787 241757787 G A OPN3 Silent p.D384D 0.03 TCGA-37-4133-01 1 245027151 245027151 G A HNRNPU Silent p.G153G 0.73 TCGA-37-4133-01 1 247752207 247752207 C T OR2G2 Silent p.C182C 0.72 TCGA-37-4133-01 1 247769576 247769576 C A OR2G3 Nonsense_Mutation p.S230* 0.69 TCGA-37-4133-01 1 248525719 248525719 G T OR2T4 Silent p.V279V 0.14 TCGA-37-4133-01 1 25627554 25627554 G A RHD Missense_Mutation p.A202T 0.76 tolerated(0.81) benign(0.26) TCGA-37-4133-01 1 25785216 25785216 G A TMEM57 Silent p.V329V 0.09 TCGA-37-4133-01 1 26360264 26360264 C T EXTL1 Silent p.D532D 0.25 TCGA-37-4133-01 1 3427347 3427347 C G MEGF6 Missense_Mutation p.D412H 0.24 deleterious(0) probably_damaging(0.999) TCGA-37-4133-01 1 34330142 34330142 A G HMGB4 Missense_Mutation p.N117S 0.22 tolerated(0.11) benign(0.028) TCGA-37-4133-01 1 38078344 38078344 C T RSPO1 3'UTR 0.24 TCGA-37-4133-01 1 38409540 38409540 T C INPP5B Missense_Mutation p.M60V 0.41 tolerated(0.22) probably_damaging(0.988) TCGA-37-4133-01 1 39800990 39800990 G C MACF1 Intron 0.44 TCGA-37-4133-01 1 60330309 60330309 C A HOOK1 Missense_Mutation p.S544R 0.35 tolerated(0.09) probably_damaging(0.983) TCGA-37-4133-01 1 66067591 66067591 A G LEPR Missense_Mutation p.T451A 0.20 tolerated(1) benign(0.001) TCGA-37-4133-01 1 75114930 75114930 C T C1orf173 Silent p.R31R 0.39 TCGA-37-4133-01 1 75606791 75606791 G T LHX8 Missense_Mutation p.R130I 0.17 deleterious(0.01) probably_damaging(0.97) TCGA-37-4133-01 1 79404919 79404919 A G ELTD1 Missense_Mutation p.L117S 0.50 tolerated_low_confidence(0.27) benign(0.021) TCGA-37-4133-01 1 94564446 94564446 C A ABCA4 Silent p.T224T 0.20 TCGA-37-4133-01 1 94685905 94685905 G T ARHGAP29 Silent p.L83L 0.50 TCGA-37-4133-01 1 9791327 9791327 G A CLSTN1 Silent p.T895T 0.21 TCGA-37-4133-01 20 1277791 1277791 G T SNPH Missense_Mutation p.R18L 0.13 deleterious(0) probably_damaging(0.979) TCGA-37-4133-01 20 1286156 1286156 C G SNPH Missense_Mutation p.Q315E 0.28 deleterious(0) probably_damaging(0.998) TCGA-37-4133-01 20 20552580 20552580 T C RALGAPA2 Missense_Mutation p.N971S 0.53 deleterious(0) probably_damaging(0.996) TCGA-37-4133-01 20 23065010 23065010 C T CD93 Missense_Mutation p.R607H 0.26 deleterious(0.02) benign(0.252) TCGA-37-4133-01 20 30822339 30822339 G T POFUT1 Missense_Mutation p.D348Y 0.72 deleterious(0) probably_damaging(0.998) TCGA-37-4133-01 20 31622902 31622902 G T BPIFB6 Missense_Mutation p.M156I 0.04 tolerated(0.24) benign(0.005) TCGA-37-4133-01 20 36611922 36611922 C A TTI1 Missense_Mutation p.G1069V 0.27 deleterious(0) benign(0.299) TCGA-37-4133-01 20 44506879 44506879 G A ZSWIM3 Missense_Mutation p.C561Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-37-4133-01 20 44685078 44685078 G A SLC12A5 Silent p.G1018G 0.31 TCGA-37-4133-01 20 45228639 45228639 C T SLC13A3 Silent p.T193T 0.20 TCGA-37-4133-01 20 54823995 54823995 C - MC3R Frame_Shift_Del p.S32Rfs*56 0.40 TCGA-37-4133-01 20 56090874 56090874 C T CTCFL Missense_Mutation p.R359H 0.24 deleterious(0) probably_damaging(0.994) TCGA-37-4133-01 20 57415276 57415276 A G RP4-806M20.3 5'Flank 0.38 TCGA-37-4133-01 20 57576578 57576578 G T CTSZ Nonsense_Mutation p.Y143* 0.38 TCGA-37-4133-01 20 62338482 62338482 A G ARFRP1 5'UTR 0.33 TCGA-37-4133-01 20 896737 896737 C T ANGPT4 Missense_Mutation p.G41S 0.44 deleterious(0) probably_damaging(0.979) TCGA-37-4133-01 21 11015091 11015091 C T TPTE RNA 0.50 TCGA-37-4133-01 21 11097576 11097576 C T BAGE2 RNA 0.08 TCGA-37-4133-01 21 33044665 33044665 T A SCAF4 Missense_Mutation p.T831S 0.66 unknown(0) TCGA-37-4133-01 21 43783371 43783371 A G TFF1 Silent p.P77P 0.30 TCGA-37-4133-01 21 44273748 44273748 C T WDR4 Silent p.G302G 0.62 TCGA-37-4133-01 21 46117824 46117824 C A KRTAP10-12 Nonsense_Mutation p.C236* 0.52 TCGA-37-4133-01 22 26264284 26264284 C T MYO18B Intron 0.25 TCGA-37-4133-01 22 32242824 32242824 G A DEPDC5 Missense_Mutation p.G1000E 0.12 tolerated(0.13) benign(0.279) TCGA-37-4133-01 22 36886290 36886290 G A FOXRED2 Missense_Mutation p.T607M 0.39 deleterious(0) probably_damaging(0.986) TCGA-37-4133-01 22 37603578 37603578 C T SSTR3 Missense_Mutation p.A89T 0.45 deleterious(0.01) probably_damaging(0.951) TCGA-37-4133-01 22 38877554 38877554 G T KDELR3 3'UTR 0.51 TCGA-37-4133-01 22 40417597 40417597 C T FAM83F Silent p.G361G 0.39 TCGA-37-4133-01 2 101893736 101893736 G A RNF149 Silent p.G389G 0.26 TCGA-37-4133-01 2 128471314 128471314 C A WDR33 Missense_Mutation p.G1051W 0.52 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-37-4133-01 2 130737915 130737915 G T RAB6C Missense_Mutation p.R76L 0.32 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-37-4133-01 2 130798118 130798118 T G KLF2P1 3'Flank 0.64 TCGA-37-4133-01 2 133539998 133539998 C A NCKAP5 Silent p.V1462V 0.28 TCGA-37-4133-01 2 164467354 164467354 C A FIGN Missense_Mutation p.D330Y 0.30 tolerated(0.07) possibly_damaging(0.647) TCGA-37-4133-01 2 170029717 170029717 A G LRP2 Missense_Mutation p.C3678R 0.28 probably_damaging(1) TCGA-37-4133-01 2 170059405 170059405 C T LRP2 Silent p.K2690K 0.25 TCGA-37-4133-01 2 170936431 170936431 C T UBR3 Silent p.C1769C 0.49 TCGA-37-4133-01 2 176794704 176794704 C T KIAA1715 Silent p.T426T 0.19 TCGA-37-4133-01 2 179594173 179594173 C T TTN Missense_Mutation p.R6237K 0.21 TCGA-37-4133-01 2 179614216 179614216 G C TTN Intron 0.46 TCGA-37-4133-01 2 182543416 182543416 C G NEUROD1 Missense_Mutation p.E58Q 0.48 tolerated(0.47) benign(0.076) TCGA-37-4133-01 2 187625902 187625902 A G FAM171B Missense_Mutation p.I359V 0.24 deleterious(0.03) possibly_damaging(0.454) TCGA-37-4133-01 2 191795219 191795219 T A GLS Missense_Mutation p.N494K 0.12 deleterious(0.01) probably_damaging(0.985) TCGA-37-4133-01 2 207173840 207173840 C A ZDBF2 Missense_Mutation p.L1530M 0.11 tolerated(0.08) benign(0.036) TCGA-37-4133-01 2 207176077 207176077 A T ZDBF2 Silent p.P2275P 0.21 TCGA-37-4133-01 2 231658041 231658041 G T CAB39 Missense_Mutation p.L131F 0.22 tolerated(0.13) benign(0.312) TCGA-37-4133-01 2 234112939 234112939 C A INPP5D Missense_Mutation p.P1036Q 0.55 deleterious(0.03) benign(0.212) TCGA-37-4133-01 2 26741909 26741909 G A OTOF Missense_Mutation p.T99M 0.12 deleterious(0.03) benign(0.045) TCGA-37-4133-01 2 33783884 33783884 A T RASGRP3 Missense_Mutation p.E617D 0.09 tolerated(0.29) benign(0.005) TCGA-37-4133-01 2 44569631 44569631 C T PREPL Missense_Mutation p.R226H 0.45 deleterious(0.01) probably_damaging(0.996) TCGA-37-4133-01 2 54146300 54146300 G A PSME4 Missense_Mutation p.P835L 0.74 tolerated(0.11) benign(0.01) TCGA-37-4133-01 2 54859735 54859735 C A SPTBN1 Silent p.T1199T 0.67 TCGA-37-4133-01 2 77746338 77746338 C T LRRTM4 Silent p.K219K 0.54 TCGA-37-4133-01 2 98914457 98914457 C T VWA3B Missense_Mutation p.T1082M 0.09 tolerated(0.15) benign(0.085) TCGA-37-4133-01 3 108474512 108474512 C G RETNLB 3'UTR 0.26 TCGA-37-4133-01 3 108776294 108776294 T A MORC1 Silent p.G357G 0.10 TCGA-37-4133-01 3 112969595 112969595 C A BOC Missense_Mutation p.N97K 0.09 tolerated(0.12) benign(0.102) TCGA-37-4133-01 3 113145025 113145025 G A WDR52 Missense_Mutation p.S118L 0.09 deleterious(0.01) benign(0.002) TCGA-37-4133-01 3 11350508 11350508 C G ATG7 Silent p.L128L 0.57 TCGA-37-4133-01 3 113755617 113755617 C T KIAA1407 Silent p.L144L 0.13 TCGA-37-4133-01 3 114070037 114070037 C T ZBTB20 Silent p.Q296Q 0.12 TCGA-37-4133-01 3 119211230 119211230 C T POGLUT1 Missense_Mutation p.T375M 0.21 deleterious(0.04) possibly_damaging(0.806) TCGA-37-4133-01 3 120394658 120394658 C T HGD Missense_Mutation p.G23D 0.07 tolerated(0.09) benign(0.1) TCGA-37-4133-01 3 122354820 122354820 C T PARP15 Missense_Mutation p.P637L 0.11 deleterious(0.04) benign(0.077) TCGA-37-4133-01 3 122645393 122645393 C T SEMA5B Missense_Mutation p.G382S 0.18 deleterious(0.05) probably_damaging(1) TCGA-37-4133-01 3 129183505 129183505 G A IFT122 Silent p.A199A 0.10 TCGA-37-4133-01 3 132294745 132294745 G A ACAD11 Silent p.S624S 0.29 TCGA-37-4133-01 3 142525099 142525099 G T TRPC1 3'UTR 0.32 TCGA-37-4133-01 3 147127973 147127973 C T ZIC1 Missense_Mutation p.A25V 0.25 tolerated_low_confidence(0.23) benign(0.029) TCGA-37-4133-01 3 151458463 151458463 G A AADACL2 Missense_Mutation p.M56I 0.29 tolerated(0.43) benign(0.015) TCGA-37-4133-01 3 155199554 155199554 T A PLCH1 Missense_Mutation p.T1429S 0.08 tolerated_low_confidence(0.6) benign(0.002) TCGA-37-4133-01 3 158415437 158415437 T G RARRES1 3'UTR 0.34 TCGA-37-4133-01 3 158415438 158415438 A C RARRES1 3'UTR 0.34 TCGA-37-4133-01 3 170198775 170198775 T C SLC7A14 Silent p.Q432Q 0.09 TCGA-37-4133-01 3 172165997 172165997 C A GHSR Silent p.S69S 0.70 TCGA-37-4133-01 3 179460014 179460014 C T USP13 Silent p.S470S 0.26 TCGA-37-4133-01 3 184910689 184910689 G A EHHADH Silent p.G499G 0.12 TCGA-37-4133-01 3 188956628 188956628 C T TPRG1 Missense_Mutation p.R137W 0.03 tolerated(0.05) benign(0.01) TCGA-37-4133-01 3 197505211 197505211 C T FYTTD1 Missense_Mutation p.T245I 0.13 deleterious(0.02) benign(0.211) TCGA-37-4133-01 3 28566160 28566160 C A ZCWPW2 Missense_Mutation p.A351D 0.67 deleterious(0.02) benign(0.097) TCGA-37-4133-01 3 40469140 40469140 A G ENTPD3 3'UTR 0.67 TCGA-37-4133-01 3 42299541 42299541 C A CCK 3'UTR 0.62 TCGA-37-4133-01 3 74383978 74383978 C T CNTN3 Missense_Mutation p.D526N 0.42 deleterious(0) probably_damaging(0.917) TCGA-37-4133-01 3 77571935 77571935 C T ROBO2 Silent p.I288I 0.24 TCGA-37-4133-01 3 77637988 77637988 G A ROBO2 Missense_Mutation p.A879T 0.44 deleterious(0.01) possibly_damaging(0.483) TCGA-37-4133-01 3 98512603 98512603 T A ST3GAL6 Nonstop_Mutation p.*332Rext*7 0.65 TCGA-37-4133-01 4 115997955 115997955 C A NDST4 Missense_Mutation p.V80F 0.30 deleterious(0) benign(0.261) TCGA-37-4133-01 4 1316281 1316281 G A MAEA Missense_Mutation p.R190Q 0.55 deleterious(0) probably_damaging(0.994) TCGA-37-4133-01 4 151749383 151749383 G A LRBA Missense_Mutation p.A1707V 0.49 tolerated_low_confidence(0.41) benign(0.008) TCGA-37-4133-01 4 156631983 156631983 T C GUCY1A3 Silent p.A222A 0.38 TCGA-37-4133-01 4 165961430 165961430 C T TRIM60 Missense_Mutation p.P69L 0.48 tolerated(0.66) benign(0.001) TCGA-37-4133-01 4 186366562 186366562 C T CCDC110 3'UTR 0.48 TCGA-37-4133-01 4 22389165 22389165 C G GPR125 3'UTR 0.44 TCGA-37-4133-01 4 27004574 27004575 AG - STIM2 Frame_Shift_Del p.R277Kfs*16 0.22 TCGA-37-4133-01 4 48552577 48552577 T A FRYL Intron 0.40 TCGA-37-4133-01 4 56823455 56823455 C G CEP135 Missense_Mutation p.S180C 0.24 deleterious(0) probably_damaging(0.983) TCGA-37-4133-01 4 85598453 85598453 C G WDFY3 Silent p.V3452V 0.33 TCGA-37-4133-01 4 96762125 96762125 A C PDHA2 Missense_Mutation p.K275T 0.08 deleterious(0.01) possibly_damaging(0.688) TCGA-37-4133-01 5 120021815 120021815 A T PRR16 Missense_Mutation p.H86L 0.71 tolerated_low_confidence(0.14) possibly_damaging(0.479) TCGA-37-4133-01 5 13864617 13864617 G T DNAH5 Missense_Mutation p.H1495Q 0.38 benign(0.02) TCGA-37-4133-01 5 140209305 140209305 G A PCDHA6 Silent p.P543P 0.09 TCGA-37-4133-01 5 140574309 140574309 G T PCDHB10 Silent p.S728S 0.64 TCGA-37-4133-01 5 140574310 140574310 G T PCDHB10 Missense_Mutation p.V729L 0.62 tolerated_low_confidence(0.05) benign(0.022) TCGA-37-4133-01 5 140711925 140711925 C T PCDHGA1 Silent p.N558N 0.04 TCGA-37-4133-01 5 156757807 156757807 G A CYFIP2 Silent p.P712P 0.25 TCGA-37-4133-01 5 23527306 23527306 G A PRDM9 Nonsense_Mutation p.W703* 0.30 TCGA-37-4133-01 5 24491937 24491937 C A CDH10 Splice_Site p.X542_splice 0.23 TCGA-37-4133-01 5 24498596 24498596 A C CDH10 Missense_Mutation p.F476V 0.34 tolerated(0.49) benign(0.112) TCGA-37-4133-01 5 40692343 40692343 C G PTGER4 Missense_Mutation p.Q444E 0.40 tolerated_low_confidence(0.26) benign(0.012) TCGA-37-4133-01 5 41004483 41004483 C A MROH2B Nonsense_Mutation p.E1387* 0.35 TCGA-37-4133-01 5 45396630 45396630 C T HCN1 Silent p.Q398Q 0.41 TCGA-37-4133-01 5 6312634 6312634 A G CTD-2324F15.2 RNA 0.37 TCGA-37-4133-01 6 110541048 110541048 A T CDC40 Missense_Mutation p.D439V 0.33 deleterious(0) probably_damaging(0.994) TCGA-37-4133-01 6 12120635 12120635 A G HIVEP1 Missense_Mutation p.M203V 0.56 deleterious(0) probably_damaging(0.995) TCGA-37-4133-01 6 138635047 138635047 C T KIAA1244 Missense_Mutation p.S1439L 0.35 tolerated(0.63) benign(0.066) TCGA-37-4133-01 6 155635434 155635434 C G TFB1M Silent p.L43L 0.24 TCGA-37-4133-01 6 163956076 163956076 C T QKI Silent p.I155I 0.09 TCGA-37-4133-01 6 170175438 170175438 G T ERMARD Missense_Mutation p.V464F 0.25 deleterious(0.01) benign(0.167) TCGA-37-4133-01 6 27107122 27107122 G A HIST1H4I Missense_Mutation p.G12E 0.15 tolerated_low_confidence(0.07) unknown(0) TCGA-37-4133-01 6 29079672 29079672 A T OR2J3 Missense_Mutation p.N2I 0.56 tolerated_low_confidence(0.3) benign(0.01) TCGA-37-4133-01 6 29640930 29640930 C T ZFP57 Missense_Mutation p.D320N 0.57 tolerated(0.21) possibly_damaging(0.545) TCGA-37-4133-01 6 31914821 31914821 G T CFB Silent p.G614G 0.16 TCGA-37-4133-01 6 39046732 39046732 G A GLP1R Splice_Site p.X295_splice 0.18 TCGA-37-4133-01 6 52993720 52993720 G T GCM1 Missense_Mutation p.Q199K 0.57 tolerated(0.88) benign(0.105) TCGA-37-4133-01 6 57472417 57472417 G T PRIM2 3'UTR 0.07 TCGA-37-4133-01 6 82924287 82924287 C A IBTK Nonsense_Mutation p.E621* 0.12 TCGA-37-4133-01 6 84569456 84569456 C T CYB5R4 5'UTR 0.70 TCGA-37-4133-01 6 85446865 85446865 A G TBX18 Silent p.T454T 0.12 TCGA-37-4133-01 6 86253440 86253440 T C SNX14 Missense_Mutation p.N383D 0.14 tolerated(1) benign(0) TCGA-37-4133-01 6 87965905 87965905 A T ZNF292 Missense_Mutation p.Q853L 0.11 deleterious(0.05) possibly_damaging(0.623) TCGA-37-4133-01 7 103801611 103801611 C A ORC5 Missense_Mutation p.G353V 0.52 deleterious(0) probably_damaging(1) TCGA-37-4133-01 7 103969662 103969662 G T LHFPL3 Missense_Mutation p.Q145H 0.20 deleterious(0.02) possibly_damaging(0.748) TCGA-37-4133-01 7 105204390 105204390 G C RINT1 Missense_Mutation p.E628Q 0.59 deleterious(0.02) benign(0.158) TCGA-37-4133-01 7 11422150 11422150 G A THSD7A Missense_Mutation p.T1502I 0.19 deleterious(0) probably_damaging(0.998) TCGA-37-4133-01 7 128317840 128317840 G T FAM71F2 Missense_Mutation p.K196N 0.21 deleterious(0.01) benign(0.055) TCGA-37-4133-01 7 129658313 129658313 T A ZC3HC1 3'UTR 0.27 TCGA-37-4133-01 7 134878009 134878009 A G WDR91 Missense_Mutation p.W545R 0.23 deleterious(0) probably_damaging(0.999) TCGA-37-4133-01 7 139164406 139164406 G A KLRG2 Silent p.Y324Y 0.51 TCGA-37-4133-01 7 142013418 142013418 T C TRBV4-1 Silent p.S91S 0.21 TCGA-37-4133-01 7 142045351 142045351 C G TRBV4-2 5'UTR 0.20 TCGA-37-4133-01 7 142045388 142045388 C T TRBV4-2 Missense_Mutation p.A9V 0.13 tolerated(1) unknown(0) TCGA-37-4133-01 7 34971211 34971211 T C DPY19L1 Missense_Mutation p.K668E 0.14 tolerated(0.35) benign(0.021) TCGA-37-4133-01 7 37907413 37907413 C T NME8 Missense_Mutation p.T244I 0.22 tolerated(0.15) benign(0.028) TCGA-37-4133-01 7 38402610 38402610 G C TRGV2 Missense_Mutation p.S70C 0.34 tolerated(0.19) possibly_damaging(0.773) TCGA-37-4133-01 7 44153947 44153947 C T AEBP1 3'UTR 0.12 TCGA-37-4133-01 7 5567226 5567226 G A ACTB 3'UTR 0.19 TCGA-37-4133-01 7 76239478 76239478 C A POMZP3 3'UTR 0.13 TCGA-37-4133-01 7 81695831 81695831 C A CACNA2D1 Missense_Mutation p.W223L 0.26 deleterious(0) probably_damaging(0.999) TCGA-37-4133-01 7 84649630 84649630 T A SEMA3D Silent p.G474G 0.57 TCGA-37-4133-01 7 87027922 87027923 CA - CROT Frame_Shift_Del p.H629* 0.39 TCGA-37-4133-01 7 92848753 92848754 - A HEPACAM2 Frame_Shift_Ins p.G31Wfs*41 0.43 TCGA-37-4133-01 7 95657515 95657515 G A DYNC1I1 Missense_Mutation p.R350H 0.56 deleterious(0) possibly_damaging(0.557) TCGA-37-4133-01 7 99580820 99580820 A G AZGP1P1 RNA 0.33 TCGA-37-4133-01 8 110984722 110984722 C A KCNV1 Missense_Mutation p.W252C 0.61 deleterious(0) probably_damaging(0.999) TCGA-37-4133-01 8 11189091 11189091 G T SLC35G5 Missense_Mutation p.W159L 0.74 tolerated(0.6) probably_damaging(0.999) TCGA-37-4133-01 8 113332151 113332151 C - CSMD3 Frame_Shift_Del p.E2409Kfs*7 0.40 TCGA-37-4133-01 8 113702181 113702181 G T CSMD3 Missense_Mutation p.Q691K 0.15 deleterious(0.04) possibly_damaging(0.5) TCGA-37-4133-01 8 144803720 144803720 G A MAPK15 Silent p.E402E 0.16 TCGA-37-4133-01 8 16001066 16001066 C T MSR1 Splice_Site p.X345_splice 0.77 TCGA-37-4133-01 8 27729452 27729452 C A SCARA5 Nonstop_Mutation p.*496Lext*110 0.76 TCGA-37-4133-01 8 52733158 52733159 - T PCMTD1 Frame_Shift_Ins p.R276Kfs*7 0.12 TCGA-37-4133-01 8 94935238 94935238 A T PDP1 Missense_Mutation p.Q342H 0.62 tolerated(0.54) benign(0.094) TCGA-37-4133-01 9 102590726 102590726 C A NR4A3 Nonsense_Mutation p.Y145* 0.31 TCGA-37-4133-01 9 104171502 104171502 T C ZNF189 Silent p.Y484Y 0.04 TCGA-37-4133-01 9 104324201 104324201 T C RNF20 Missense_Mutation p.S887P 0.17 deleterious(0.03) benign(0.105) TCGA-37-4133-01 9 111754347 111754347 T C CTNNAL1 Intron 0.32 TCGA-37-4133-01 9 117188639 117188639 C A DFNB31 Missense_Mutation p.D340Y 0.15 deleterious(0) probably_damaging(1) TCGA-37-4133-01 9 118997639 118997639 T A PAPPA Missense_Mutation p.L819M 0.39 deleterious(0.02) possibly_damaging(0.665) TCGA-37-4133-01 9 119033690 119033690 G A PAPPA Missense_Mutation p.C983Y 0.22 deleterious(0) benign(0.384) TCGA-37-4133-01 9 125391441 125391441 T A OR1B1 Missense_Mutation p.Y125F 0.32 tolerated(0.41) probably_damaging(0.913) TCGA-37-4133-01 9 140772528 140772528 C A CACNA1B Nonsense_Mutation p.S48* 0.29 TCGA-37-4133-01 9 2081898 2081898 A G SMARCA2 Missense_Mutation p.M751V 0.80 benign(0.001) TCGA-37-4133-01 9 39887386 39887386 G A SPATA31A2 Missense_Mutation p.E125K 0.17 tolerated(0.23) possibly_damaging(0.486) TCGA-37-4133-01 9 77435287 77435287 T C TRPM6 Missense_Mutation p.N356S 0.18 tolerated(0.27) benign(0.057) TCGA-37-4133-01 9 84609543 84609543 G C SPATA31D1 Missense_Mutation p.Q1386H 0.20 deleterious(0) probably_damaging(0.997) TCGA-37-4133-01 X 101382147 101382147 G T TCEAL2 Missense_Mutation p.E115D 0.83 tolerated(0.07) possibly_damaging(0.523) TCGA-37-4133-01 X 105152720 105152720 G A NRK Missense_Mutation p.G364R 0.71 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-37-4133-01 X 138671994 138671994 C T MCF2 Silent p.Q866Q 0.78 TCGA-37-4133-01 X 205453 205453 G T PLCXD1 Nonsense_Mutation p.E61* 0.44 TCGA-37-4133-01 X 21450923 21450923 G T CNKSR2 Missense_Mutation p.W141L 0.75 deleterious(0) probably_damaging(0.974) TCGA-37-4133-01 X 26158006 26158006 T G MAGEB18 Missense_Mutation p.C302G 0.90 tolerated(0.07) benign(0.076) TCGA-37-4133-01 X 34148451 34148451 C A FAM47A Nonsense_Mutation p.E649* 0.78 TCGA-37-4133-01 X 37029404 37029404 A T FAM47C Missense_Mutation p.D974V 0.75 deleterious(0.01) probably_damaging(0.995) TCGA-37-4133-01 X 47774987 47774987 G T ZNF81 Missense_Mutation p.K314N 0.79 tolerated(0.06) probably_damaging(0.995) TCGA-37-4133-01 X 52679419 52679419 T C SSX7 Missense_Mutation p.Q105R 0.06 tolerated(0.07) benign(0.423) TCGA-37-4135-01 10 105758924 105758924 A G SLK Missense_Mutation p.Y212C 0.94 deleterious(0) probably_damaging(1) TCGA-37-4135-01 10 124177426 124177426 G A PLEKHA1 Nonsense_Mutation p.W208* 0.80 TCGA-37-4135-01 10 127806611 127806611 C T ADAM12 Missense_Mutation p.R203K 0.83 tolerated(0.34) benign(0.003) TCGA-37-4135-01 10 135099108 135099108 T C TUBGCP2 Missense_Mutation p.I611V 0.83 tolerated(0.38) benign(0.03) TCGA-37-4135-01 10 135205003 135205003 G T PAOX 3'UTR 0.82 TCGA-37-4135-01 10 22094922 22094924 CGA AAC DNAJC1 Missense_Mutation p.R362L 0.24 TCGA-37-4135-01 10 25886740 25886740 A G GPR158 Missense_Mutation p.K729E 0.41 deleterious(0) probably_damaging(0.998) TCGA-37-4135-01 10 26590035 26590035 G T GAD2 3'UTR 0.80 TCGA-37-4135-01 10 38404208 38404208 G A ZNF37A Silent p.Q76Q 0.83 TCGA-37-4135-01 10 43285856 43285856 A T BMS1 Missense_Mutation p.K178I 0.78 deleterious(0) probably_damaging(1) TCGA-37-4135-01 10 49448458 49448458 C T FRMPD2 Silent p.G215G 0.43 TCGA-37-4135-01 10 55698651 55698651 G T PCDH15 Silent p.T1099T 0.88 TCGA-37-4135-01 10 75567217 75567217 G A NDST2 Silent p.D310D 0.83 TCGA-37-4135-01 11 10622583 10622583 C T MRVI1 Silent p.T633T 0.39 TCGA-37-4135-01 11 108712165 108712165 A G DDX10 Missense_Mutation p.K737E 0.96 deleterious(0) probably_damaging(0.997) TCGA-37-4135-01 11 124267027 124267027 G T OR8B3 Missense_Mutation p.S74Y 0.68 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-37-4135-01 11 125505413 125505413 G T CHEK1 Missense_Mutation p.D235Y 0.72 deleterious(0) probably_damaging(0.958) TCGA-37-4135-01 11 20101645 20101645 C T NAV2 Missense_Mutation p.R1795C 0.79 deleterious(0) probably_damaging(0.998) TCGA-37-4135-01 11 30253418 30253418 A G FSHB Intron 0.87 TCGA-37-4135-01 11 3427820 3427820 T A TSSC2 RNA 0.77 TCGA-37-4135-01 11 3789812 3789812 A G NUP98 Missense_Mutation p.M316T 0.87 tolerated(0.16) probably_damaging(0.974) TCGA-37-4135-01 11 40136637 40136637 C A LRRC4C Silent p.R402R 0.85 TCGA-37-4135-01 11 45671652 45671652 C A CHST1 Silent p.T274T 0.88 TCGA-37-4135-01 11 48328166 48328166 C A OR4S1 Missense_Mutation p.T131K 0.29 deleterious(0) benign(0.024) TCGA-37-4135-01 11 48347034 48347034 C T OR4C3 Missense_Mutation p.S181L 0.26 deleterious(0) probably_damaging(0.999) TCGA-37-4135-01 11 5010971 5010971 G C MMP26 Missense_Mutation p.G65R 0.79 tolerated(0.17) benign(0.039) TCGA-37-4135-01 11 5020271 5020271 C T OR51L1 Missense_Mutation p.P20L 0.84 deleterious(0.01) benign(0.299) TCGA-37-4135-01 11 5153222 5153222 T C OR52A5 Missense_Mutation p.I217M 0.90 deleterious(0) probably_damaging(0.988) TCGA-37-4135-01 11 5529151 5529151 C T UBQLN3 Missense_Mutation p.M546I 0.85 tolerated(0.21) benign(0.002) TCGA-37-4135-01 11 55321832 55321832 C T OR4C15 Missense_Mutation p.T17I 0.85 deleterious_low_confidence(0) unknown(0) TCGA-37-4135-01 11 56237250 56237250 G - OR5M3 Frame_Shift_Del p.H242Ifs*2 0.53 TCGA-37-4135-01 11 56380848 56380848 C A OR5M1 Missense_Mutation p.C44F 0.84 deleterious(0) benign(0.003) TCGA-37-4135-01 11 58034340 58034340 G A OR10W1 3'UTR 0.27 TCGA-37-4135-01 11 58207613 58207613 G T OR5B12 Missense_Mutation p.N4K 0.61 tolerated_low_confidence(0.66) benign(0.003) TCGA-37-4135-01 11 61545903 61545903 C G MYRF Missense_Mutation p.T652S 0.80 tolerated(0.43) benign(0.014) TCGA-37-4135-01 11 6244402 6244402 C - FAM160A2 Frame_Shift_Del p.D282Ifs*20 0.56 TCGA-37-4135-01 11 64972295 64972295 G T CAPN1 Missense_Mutation p.R436L 0.84 tolerated(0.22) benign(0.111) TCGA-37-4135-01 11 67223114 67223114 C A CABP4 Missense_Mutation p.P74T 0.95 tolerated(0.17) benign(0.039) TCGA-37-4135-01 11 70007316 70007316 C G ANO1 Missense_Mutation p.S543C 0.02 tolerated(0.16) probably_damaging(0.996) TCGA-37-4135-01 11 74168368 74168368 G A KCNE3 Missense_Mutation p.R81C 0.49 deleterious(0.02) probably_damaging(0.999) TCGA-37-4135-01 11 86209149 86209149 A G ME3 Silent p.D187D 0.55 TCGA-37-4135-01 12 100444968 100444968 C A UHRF1BP1L Missense_Mutation p.R1152S 0.24 tolerated(0.51) benign(0.01) TCGA-37-4135-01 12 10783902 10783902 C A STYK1 Missense_Mutation p.A65S 0.87 tolerated(0.64) benign(0.017) TCGA-37-4135-01 12 111471974 111471974 C T CUX2 5'UTR 0.65 TCGA-37-4135-01 12 123200902 123200902 C A HCAR3 Missense_Mutation p.R128L 0.62 deleterious(0) probably_damaging(1) TCGA-37-4135-01 12 125834780 125834780 G C TMEM132B Missense_Mutation p.D279H 0.25 deleterious(0) probably_damaging(1) TCGA-37-4135-01 12 130827577 130827577 C A PIWIL1 Missense_Mutation p.P41T 0.60 tolerated(0.24) benign(0) TCGA-37-4135-01 12 130926407 130926407 G C RIMBP2 Missense_Mutation p.S480C 0.58 tolerated(0.55) benign(0.008) TCGA-37-4135-01 12 132284061 132284061 A G SFSWAP 3'UTR 0.25 TCGA-37-4135-01 12 42853747 42853747 C T PRICKLE1 Missense_Mutation p.R787Q 0.14 tolerated(0.37) possibly_damaging(0.836) TCGA-37-4135-01 12 48596351 48596351 C G OR10AD1 Missense_Mutation p.C242S 0.45 deleterious(0.01) possibly_damaging(0.783) TCGA-37-4135-01 12 49444120 49444120 G A KMT2D Missense_Mutation p.P1084L 0.55 probably_damaging(0.994) TCGA-37-4135-01 12 53232884 53232884 G T KRT78 3'UTR 0.59 TCGA-37-4135-01 12 54675662 54675662 G C HNRNPA1 Missense_Mutation p.M72I 0.26 deleterious(0.05) possibly_damaging(0.562) TCGA-37-4135-01 12 56811541 56811541 T G TIMELESS Missense_Mutation p.K1196Q 0.58 deleterious_low_confidence(0.01) possibly_damaging(0.828) TCGA-37-4135-01 12 57110822 57110822 C A NACA Intron 0.25 TCGA-37-4135-01 12 71029792 71029792 T C PTPRB Missense_Mutation p.K37R 0.58 tolerated_low_confidence(0.76) benign(0.002) TCGA-37-4135-01 12 75444647 75444647 T A KCNC2 Missense_Mutation p.N380Y 0.29 deleterious(0) probably_damaging(0.995) TCGA-37-4135-01 12 78400393 78400393 C T NAV3 Missense_Mutation p.P359S 0.61 deleterious_low_confidence(0.05) probably_damaging(0.999) TCGA-37-4135-01 12 80655845 80655845 G T OTOGL Silent p.V653V 0.27 TCGA-37-4135-01 12 90013882 90013882 C G ATP2B1 Missense_Mutation p.V575L 0.27 deleterious(0) probably_damaging(0.994) TCGA-37-4135-01 12 93100489 93100489 C T C12orf74 Missense_Mutation p.P28S 0.27 tolerated(1) benign(0.003) TCGA-37-4135-01 13 111368196 111368196 G T ING1 Missense_Mutation p.G136W 0.89 deleterious_low_confidence(0) possibly_damaging(0.84) TCGA-37-4135-01 13 31891773 31891773 G T B3GALTL Missense_Mutation p.G379C 0.86 deleterious(0) probably_damaging(1) TCGA-37-4135-01 13 32376599 32376599 T C RXFP2 3'UTR 0.87 TCGA-37-4135-01 13 50096223 50096223 C A PHF11 Missense_Mutation p.L184I 0.88 tolerated(0.22) benign(0.408) TCGA-37-4135-01 13 77748550 77748550 T A MYCBP2 Silent p.T1811T 0.89 TCGA-37-4135-01 14 21051957 21051957 T A RNASE11 3'UTR 0.85 TCGA-37-4135-01 14 24774710 24774710 T A NOP9 3'UTR 0.52 TCGA-37-4135-01 14 60978002 60978002 C A SIX6 3'UTR 0.91 TCGA-37-4135-01 14 74824821 74824821 G T VRTN Silent p.R445R 0.78 TCGA-37-4135-01 14 77318716 77318716 G C C14orf166B Missense_Mutation p.V246L 0.67 tolerated(0.25) benign(0.036) TCGA-37-4135-01 14 88400955 88400955 C A GALC 3'UTR 0.71 TCGA-37-4135-01 14 95999738 95999738 A C GLRX5 5'Flank 0.06 TCGA-37-4135-01 15 20876537 20876537 G C NBEAP1 RNA 0.04 TCGA-37-4135-01 15 28202871 28202871 G T OCA2 Missense_Mutation p.H549Q 0.24 tolerated(0.07) probably_damaging(0.997) TCGA-37-4135-01 15 40498502 40498502 G C BUB1B Missense_Mutation p.V618L 0.26 deleterious(0.01) benign(0.066) TCGA-37-4135-01 15 48789500 48789500 T C FBN1 Silent p.S752S 0.57 TCGA-37-4135-01 15 49917312 49917312 C A DTWD1 Intron 0.27 TCGA-37-4135-01 15 50570937 50570937 T G GABPB1 Missense_Mutation p.E360D 0.04 deleterious(0) possibly_damaging(0.622) TCGA-37-4135-01 15 54825265 54825265 G T UNC13C Splice_Site p.X1899_splice 0.44 TCGA-37-4135-01 15 66604126 66604126 A T DIS3L Missense_Mutation p.Q208L 0.56 tolerated(0.13) benign(0.016) TCGA-37-4135-01 15 66727503 66727503 G A MAP2K1 Silent p.E73E 0.57 TCGA-37-4135-01 15 67681239 67681239 A G IQCH Silent p.K509K 0.58 TCGA-37-4135-01 15 69677203 69677203 G A PAQR5 Missense_Mutation p.V123I 0.63 tolerated(0.08) probably_damaging(0.997) TCGA-37-4135-01 15 72170530 72170530 G T MYO9A Missense_Mutation p.L1928I 0.27 deleterious(0.02) probably_damaging(0.997) TCGA-37-4135-01 15 72533854 72533854 T C PARP6 Missense_Mutation p.D612G 0.53 deleterious(0.01) benign(0.312) TCGA-37-4135-01 15 73635889 73635889 G A HCN4 Missense_Mutation p.S349F 0.53 deleterious(0) possibly_damaging(0.472) TCGA-37-4135-01 15 74032896 74032896 A T C15orf59 Missense_Mutation p.S82T 0.26 tolerated(0.09) probably_damaging(0.994) TCGA-37-4135-01 15 77906692 77906692 G C LINGO1 Silent p.P519P 0.23 TCGA-37-4135-01 15 81601090 81601090 G A IL16 Missense_Mutation p.R1317K 0.54 tolerated(0.82) benign(0.004) TCGA-37-4135-01 16 2026220 2026220 C A TBL3 Missense_Mutation p.S399R 0.46 deleterious(0) probably_damaging(0.918) TCGA-37-4135-01 16 227341 227341 T C HBA1 Silent p.P120P 0.37 TCGA-37-4135-01 16 335151 335151 G C PDIA2 Missense_Mutation p.R249P 0.43 tolerated(0.06) possibly_damaging(0.587) TCGA-37-4135-01 16 3786795 3786795 C A CREBBP Missense_Mutation p.W1472C 0.42 unknown(0) TCGA-37-4135-01 16 51175301 51175301 A G SALL1 Missense_Mutation p.S278P 0.49 tolerated(0.2) possibly_damaging(0.634) TCGA-37-4135-01 16 65022115 65022115 G T CDH11 Nonsense_Mutation p.S315* 0.44 TCGA-37-4135-01 16 70505156 70505156 C A FUK Silent p.G414G 0.46 TCGA-37-4135-01 16 708597 708597 G T WDR90 Missense_Mutation p.A947S 0.47 tolerated(0.16) benign(0.009) TCGA-37-4135-01 16 77228951 77228951 G T MON1B Missense_Mutation p.A399S 0.38 tolerated(1) benign(0.004) TCGA-37-4135-01 16 86601098 86601098 G A FOXC2 Missense_Mutation p.G53S 0.47 deleterious(0.04) possibly_damaging(0.527) TCGA-37-4135-01 17 10400464 10400464 G T MYH1 Silent p.R1526R 0.87 TCGA-37-4135-01 17 21319347 21319347 G T KCNJ12 Missense_Mutation p.Q231H 0.13 deleterious(0) probably_damaging(0.998) TCGA-37-4135-01 17 27011603 27011603 G T SUPT6H Splice_Site p.X744_splice 0.41 TCGA-37-4135-01 17 31324532 31324532 T A SPACA3 Missense_Mutation p.L191Q 0.49 deleterious(0) probably_damaging(0.981) TCGA-37-4135-01 17 35598928 35598928 C G ACACA Silent p.R991R 0.43 TCGA-37-4135-01 17 36872911 36872918 AACGGATG - MLLT6 Frame_Shift_Del p.K443Tfs*11 0.28 TCGA-37-4135-01 17 37564252 37564252 C T MED1 Missense_Mutation p.V1408M 0.24 deleterious_low_confidence(0.02) unknown(0) TCGA-37-4135-01 17 40880898 40880898 G T EZH1 Missense_Mutation p.S21Y 0.45 tolerated(0.06) probably_damaging(0.974) TCGA-37-4135-01 17 55123210 55123210 G A RNF126P1 RNA 0.38 TCGA-37-4135-01 17 61613156 61613156 C A KCNH6 Missense_Mutation p.L410I 0.18 deleterious(0) probably_damaging(0.98) TCGA-37-4135-01 17 62796607 62796607 T A PLEKHM1P RNA 0.48 TCGA-37-4135-01 17 72519521 72519521 G T CD300LB Intron 0.44 TCGA-37-4135-01 17 74157722 74157722 C T RNF157 Missense_Mutation p.R320Q 0.33 deleterious(0.02) possibly_damaging(0.782) TCGA-37-4135-01 17 7579485 7579485 C A TP53 Nonsense_Mutation p.E68* 0.85 TCGA-37-4135-01 17 78335564 78335564 A C RNF213 Missense_Mutation p.Q3744P 0.18 benign(0.055) TCGA-37-4135-01 17 78972932 78972932 G T CHMP6 Silent p.A195A 0.46 TCGA-37-4135-01 17 79430641 79430641 C T RP11-1055B8.7 Missense_Mutation p.A2542V 0.18 probably_damaging(0.994) TCGA-37-4135-01 17 79915782 79915782 C G NOTUM Missense_Mutation p.E199Q 0.45 tolerated(0.32) possibly_damaging(0.629) TCGA-37-4135-01 18 117048 117048 A G ROCK1P1 RNA 0.23 TCGA-37-4135-01 18 14542774 14542774 G A POTEC Silent p.D124D 0.31 TCGA-37-4135-01 18 19244139 19244139 T A ABHD3 Missense_Mutation p.H203L 0.30 tolerated(0.11) benign(0.077) TCGA-37-4135-01 18 22671936 22671936 G T ZNF521 Missense_Mutation p.F1256L 0.57 deleterious(0.01) benign(0) TCGA-37-4135-01 18 24496372 24496372 A G CHST9 Missense_Mutation p.F395L 0.12 deleterious(0) probably_damaging(0.999) TCGA-37-4135-01 18 28911754 28911754 C T DSG1 Missense_Mutation p.P203L 0.42 deleterious(0) probably_damaging(0.999) TCGA-37-4135-01 18 3079303 3079303 C A MYOM1 Missense_Mutation p.G1508W 0.34 deleterious(0) probably_damaging(1) TCGA-37-4135-01 18 40695447 40695447 C A RIT2 Missense_Mutation p.S13I 0.45 deleterious(0.02) benign(0.118) TCGA-37-4135-01 18 61379905 61379905 C A SERPINB11 Missense_Mutation p.T112K 0.21 tolerated(0.21) benign(0.009) TCGA-37-4135-01 18 66678275 66678275 A T CCDC102B Silent p.A456A 0.54 TCGA-37-4135-01 18 7231852 7231852 T A LRRC30 Missense_Mutation p.L239H 0.84 deleterious(0) probably_damaging(0.963) TCGA-37-4135-01 18 8824917 8824917 G A SOGA2 Missense_Mutation p.E1137K 0.29 tolerated(0.13) benign(0.053) TCGA-37-4135-01 19 10132324 10132324 C A RDH8 Silent p.R299R 0.83 TCGA-37-4135-01 19 10421531 10421531 C A FDX1L Missense_Mutation p.E131D 0.87 tolerated(0.05) benign(0.073) TCGA-37-4135-01 19 15234199 15234199 C T ILVBL Missense_Mutation p.M108I 0.56 deleterious(0.01) benign(0.005) TCGA-37-4135-01 19 15839214 15839214 G T OR10H2 Missense_Mutation p.D121Y 0.27 deleterious(0) probably_damaging(0.993) TCGA-37-4135-01 19 18100568 18100568 T C KCNN1 Missense_Mutation p.I405T 0.87 deleterious(0) probably_damaging(0.925) TCGA-37-4135-01 19 19762598 19762598 C T ATP13A1 Missense_Mutation p.M745I 0.81 deleterious(0.03) probably_damaging(0.919) TCGA-37-4135-01 19 23542464 23542464 T C ZNF91 Missense_Mutation p.Y1106C 0.83 deleterious(0.04) probably_damaging(0.995) TCGA-37-4135-01 19 33698431 33698431 T G LRP3 Missense_Mutation p.C755G 0.95 tolerated_low_confidence(0.1) benign(0.027) TCGA-37-4135-01 19 35616050 35616050 G C LGI4 3'UTR 0.33 TCGA-37-4135-01 19 36019135 36019135 C T SBSN Missense_Mutation p.G17R 0.44 deleterious(0.01) probably_damaging(0.979) TCGA-37-4135-01 19 36831795 36831795 G - ZFP14 Frame_Shift_Del p.Y312Mfs*68 0.46 TCGA-37-4135-01 19 43766118 43766118 G C PSG9 Silent p.T201T 0.84 TCGA-37-4135-01 19 44792476 44792476 C G ZNF235 Missense_Mutation p.G371A 0.91 deleterious(0.04) probably_damaging(1) TCGA-37-4135-01 19 49001464 49001464 T C LMTK3 Silent p.R983R 0.85 TCGA-37-4135-01 19 52148761 52148761 G C SIGLEC14 Missense_Mutation p.I241M 0.74 tolerated(0.09) benign(0.212) TCGA-37-4135-01 19 54561751 54561751 T C VSTM1 Missense_Mutation p.N55S 0.79 deleterious(0.01) probably_damaging(0.997) TCGA-37-4135-01 19 54783745 54783745 G A LILRB2 Missense_Mutation p.P86S 0.84 tolerated(0.33) benign(0.022) TCGA-37-4135-01 19 56701621 56701621 A G ZSCAN5B Missense_Mutation p.F355L 0.87 tolerated(0.25) benign(0.006) TCGA-37-4135-01 19 7082909 7082909 A G ZNF557 Silent p.A149A 0.79 TCGA-37-4135-01 19 7975984 7975984 C A MAP2K7 Missense_Mutation p.S265R 0.82 deleterious(0) probably_damaging(1) TCGA-37-4135-01 19 9011492 9011492 G T MUC16 Missense_Mutation p.P12914H 0.84 probably_damaging(0.996) TCGA-37-4135-01 1 100757119 100757119 A G RTCA 3'UTR 0.39 TCGA-37-4135-01 1 10714050 10714050 G C CASZ1 Missense_Mutation p.H688Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-37-4135-01 1 111957655 111957655 C A OVGP1 Nonsense_Mutation p.G490* 0.32 TCGA-37-4135-01 1 11298013 11298013 C G MTOR Missense_Mutation p.A699P 0.59 deleterious(0) probably_damaging(0.975) TCGA-37-4135-01 1 113161789 113161789 G A ST7L 5'UTR 0.26 TCGA-37-4135-01 1 118635849 118635849 C A SPAG17 Missense_Mutation p.S368I 0.32 deleterious(0) probably_damaging(0.918) TCGA-37-4135-01 1 144915519 144915519 T A PDE4DIP Nonsense_Mutation p.K636* 0.10 TCGA-37-4135-01 1 145281550 145281550 C T NOTCH2NL Silent p.L160L 0.10 TCGA-37-4135-01 1 149754515 149754515 A G HIST2H2BF 3'UTR 0.36 TCGA-37-4135-01 1 150477403 150477403 C T TARS2 Silent p.F614F 0.14 TCGA-37-4135-01 1 151752598 151752598 C A TDRKH Missense_Mutation p.A84S 0.53 deleterious(0) probably_damaging(1) TCGA-37-4135-01 1 156756874 156756874 G T PRCC Missense_Mutation p.G331W 0.54 deleterious(0) possibly_damaging(0.887) TCGA-37-4135-01 1 156756875 156756875 G T PRCC Missense_Mutation p.G331V 0.53 tolerated(0.19) benign(0.024) TCGA-37-4135-01 1 157659610 157659610 G A FCRL3 Silent p.Y596Y 0.32 TCGA-37-4135-01 1 16374837 16374837 G - CLCNKB Splice_Site p.X167_splice 0.40 TCGA-37-4135-01 1 17964465 17964465 G T ARHGEF10L Silent p.T670T 0.62 TCGA-37-4135-01 1 196459055 196459055 C G KCNT2 Missense_Mutation p.R63P 0.32 deleterious(0) benign(0.302) TCGA-37-4135-01 1 197019841 197019841 G A F13B Missense_Mutation p.P575L 0.47 deleterious(0.02) possibly_damaging(0.651) TCGA-37-4135-01 1 200017659 200017659 G A NR5A2 Missense_Mutation p.D275N 0.39 tolerated(0.22) benign(0.002) TCGA-37-4135-01 1 201195001 201195001 G T IGFN1 Silent p.G3512G 0.48 TCGA-37-4135-01 1 204409374 204409374 C A PIK3C2B Missense_Mutation p.G1109W 0.56 deleterious(0) probably_damaging(1) TCGA-37-4135-01 1 204587979 204587979 T C LRRN2 Missense_Mutation p.N381S 0.42 tolerated(0.19) benign(0.297) TCGA-37-4135-01 1 211452590 211452590 G C RCOR3 Missense_Mutation p.V218L 0.30 tolerated(0.5) benign(0.067) TCGA-37-4135-01 1 213251154 213251155 - T RPS6KC1 Frame_Shift_Ins p.G88Wfs*4 0.35 TCGA-37-4135-01 1 215844328 215844328 C G USH2A Missense_Mutation p.E4707Q 0.18 possibly_damaging(0.703) TCGA-37-4135-01 1 228494091 228494091 G T OBSCN Missense_Mutation p.R4850L 0.29 possibly_damaging(0.58) TCGA-37-4135-01 1 228547345 228547345 G T OBSCN Intron 0.43 TCGA-37-4135-01 1 235969541 235969541 A T LYST Silent p.S965S 0.52 TCGA-37-4135-01 1 237711812 237711812 G A RYR2 Silent p.V996V 0.61 TCGA-37-4135-01 1 24384078 24384078 G T MYOM3 Missense_Mutation p.P1364T 0.58 deleterious(0) probably_damaging(1) TCGA-37-4135-01 1 246797278 246797278 G A CNST Silent p.L223L 0.50 TCGA-37-4135-01 1 247769302 247769302 C A OR2G3 Silent p.R139R 0.36 TCGA-37-4135-01 1 248004491 248004491 C A OR11L1 Missense_Mutation p.K236N 0.35 deleterious(0) probably_damaging(0.935) TCGA-37-4135-01 1 248004498 248004498 C T OR11L1 Missense_Mutation p.R234Q 0.56 tolerated(0.07) benign(0.045) TCGA-37-4135-01 1 248308605 248308605 C G OR2M5 Missense_Mutation p.D52E 0.32 deleterious(0.05) benign(0.048) TCGA-37-4135-01 1 248436788 248436788 C T OR2T33 Missense_Mutation p.C110Y 0.32 tolerated(0.09) probably_damaging(0.91) TCGA-37-4135-01 1 248525260 248525260 C T OR2T4 Silent p.A126A 0.56 TCGA-37-4135-01 1 248637518 248637518 G T OR2T3 Silent p.V289V 0.32 TCGA-37-4135-01 1 248685489 248685489 T C OR2G6 Missense_Mutation p.V181A 0.60 deleterious(0.02) possibly_damaging(0.708) TCGA-37-4135-01 1 26359739 26359739 C A EXTL1 Missense_Mutation p.P484Q 0.47 deleterious(0) probably_damaging(0.992) TCGA-37-4135-01 1 26581751 26581751 G T CEP85 Missense_Mutation p.G100W 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-37-4135-01 1 33147661 33147661 G A RBBP4 3'UTR 0.40 TCGA-37-4135-01 1 36226273 36226273 C A CLSPN Missense_Mutation p.D417Y 0.28 deleterious(0) possibly_damaging(0.693) TCGA-37-4135-01 1 39341485 39341485 C T GJA9 Missense_Mutation p.A96T 0.32 deleterious(0) probably_damaging(0.922) TCGA-37-4135-01 1 41304020 41304020 G T KCNQ4 Missense_Mutation p.G638V 0.50 deleterious(0) probably_damaging(0.932) TCGA-37-4135-01 1 43782945 43782945 C A TIE1 Missense_Mutation p.L829M 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-37-4135-01 1 47550554 47550554 A G CYP4Z1 Missense_Mutation p.M226V 0.17 tolerated(0.61) benign(0) TCGA-37-4135-01 1 49332895 49332895 C A AGBL4 Missense_Mutation p.R201L 0.54 deleterious(0) probably_damaging(0.991) TCGA-37-4135-01 1 57173172 57173172 G C PRKAA2 Missense_Mutation p.G482A 0.23 tolerated(0.23) possibly_damaging(0.795) TCGA-37-4135-01 1 64027381 64027381 G C EFCAB7 Missense_Mutation p.E450D 0.34 tolerated(0.08) benign(0.029) TCGA-37-4135-01 1 67470003 67470003 C A SLC35D1 3'UTR 0.64 TCGA-37-4135-01 1 74540356 74540356 A T LRRIQ3 Missense_Mutation p.L329H 0.80 tolerated(0.1) benign(0.14) TCGA-37-4135-01 1 74670658 74670658 A G FPGT Silent p.G309G 0.24 TCGA-37-4135-01 1 75037587 75037587 C A C1orf173 Missense_Mutation p.R1269S 0.55 tolerated(0.69) benign(0.033) TCGA-37-4135-01 1 75596350 75596350 G A LHX8 5'UTR 0.30 TCGA-37-4135-01 1 92941612 92941612 G A GFI1 Missense_Mutation p.R415W 0.30 deleterious(0) probably_damaging(0.987) TCGA-37-4135-01 20 14307905 14307905 A T FLRT3 Missense_Mutation p.L83Q 0.40 tolerated(0.61) benign(0.14) TCGA-37-4135-01 20 17341277 17341277 T C PCSK2 Missense_Mutation p.M166T 0.29 deleterious(0) probably_damaging(0.993) TCGA-37-4135-01 20 25198135 25198135 C T ENTPD6 Intron 0.42 TCGA-37-4135-01 20 32349741 32349741 C G ZNF341 Missense_Mutation p.H361D 0.23 deleterious(0) probably_damaging(0.964) TCGA-37-4135-01 20 33875407 33875407 G T FAM83C Missense_Mutation p.P392H 0.75 deleterious_low_confidence(0.05) benign(0.006) TCGA-37-4135-01 20 40050343 40050343 T C CHD6 Silent p.T1644T 0.67 TCGA-37-4135-01 20 60893579 60893579 C A LAMA5 Silent p.R2390R 0.56 TCGA-37-4135-01 20 62329762 62329762 G A TNFRSF6B Missense_Mutation p.R250H 0.28 deleterious(0.03) possibly_damaging(0.893) TCGA-37-4135-01 21 10863005 10863005 G T IGHV1OR21-1 Nonsense_Mutation p.E101* 0.57 TCGA-37-4135-01 21 11038840 11038840 A T BAGE2 RNA 0.54 TCGA-37-4135-01 21 30354687 30354687 G A LTN1 Silent p.L240L 0.68 TCGA-37-4135-01 21 31654375 31654375 A G KRTAP24-1 3'UTR 0.79 TCGA-37-4135-01 22 40815102 40815102 G A MKL1 Missense_Mutation p.T447M 1.00 tolerated(0.05) probably_damaging(0.993) TCGA-37-4135-01 22 44602430 44602430 G A PARVG 3'UTR 0.82 TCGA-37-4135-01 2 107052680 107052680 T A RGPD3 Nonsense_Mutation p.R553* 0.59 TCGA-37-4135-01 2 128389944 128389944 C A MYO7B Silent p.P1765P 0.46 TCGA-37-4135-01 2 131487618 131487618 A G GPR148 Silent p.T298T 0.24 TCGA-37-4135-01 2 133174482 133174482 C G GPR39 5'UTR 0.58 TCGA-37-4135-01 2 135988217 135988217 C A ZRANB3 Missense_Mutation p.S607I 0.30 tolerated(0.18) benign(0.013) TCGA-37-4135-01 2 140995827 140995827 C A LRP1B Missense_Mutation p.G4485V 0.27 probably_damaging(0.953) TCGA-37-4135-01 2 161052922 161052922 G A ITGB6 Missense_Mutation p.H51Y 0.57 deleterious(0.02) benign(0.003) TCGA-37-4135-01 2 162273453 162273453 C T TBR1 Nonsense_Mutation p.Q178* 0.28 TCGA-37-4135-01 2 162799319 162799319 C G SLC4A10 Missense_Mutation p.P672R 0.50 deleterious(0) probably_damaging(0.958) TCGA-37-4135-01 2 165365270 165365270 G C GRB14 Missense_Mutation p.N303K 0.31 deleterious(0.01) benign(0.04) TCGA-37-4135-01 2 167760191 167760191 G A XIRP2 Missense_Mutation p.G67R 0.51 benign(0.003) TCGA-37-4135-01 2 177033999 177034000 - CCCCCACCAGCCCTCCCCACCCA HOXD3 Frame_Shift_Ins p.A54Pfs*31 0.14 TCGA-37-4135-01 2 178098968 178098968 T A NFE2L2 Missense_Mutation p.Q26L 0.32 deleterious(0) probably_damaging(0.999) TCGA-37-4135-01 2 179209053 179209053 G T OSBPL6 Missense_Mutation p.R343L 0.55 tolerated(0.67) benign(0.002) TCGA-37-4135-01 2 179334381 179334381 C G FKBP7 Missense_Mutation p.E169Q 0.53 deleterious(0.02) probably_damaging(1) TCGA-37-4135-01 2 179615473 179615473 G T TTN Intron 0.31 TCGA-37-4135-01 2 190921983 190921983 C G MSTN 3'UTR 0.60 TCGA-37-4135-01 2 197990703 197990703 C A ANKRD44 Missense_Mutation p.W107L 0.29 deleterious(0.04) probably_damaging(0.949) TCGA-37-4135-01 2 202025532 202025532 G T CFLAR Missense_Mutation p.G391W 0.48 tolerated(0.12) benign(0.071) TCGA-37-4135-01 2 220379768 220379768 C T ASIC4 Missense_Mutation p.P235S 0.22 tolerated(0.2) possibly_damaging(0.498) TCGA-37-4135-01 2 222301171 222301171 A G EPHA4 Missense_Mutation p.F765S 0.26 deleterious(0) probably_damaging(0.958) TCGA-37-4135-01 2 228883485 228883485 G C SPHKAP Missense_Mutation p.N695K 0.59 tolerated(0.22) benign(0.002) TCGA-37-4135-01 2 239141174 239141174 C G AC016757.3 5'Flank 0.28 TCGA-37-4135-01 2 27465570 27465570 G T CAD Missense_Mutation p.R2102L 0.58 tolerated(0.1) benign(0.09) TCGA-37-4135-01 2 29247232 29247233 - C FAM179A Frame_Shift_Ins p.G616Rfs*15 0.23 TCGA-37-4135-01 2 30863187 30863187 G T LCLAT1 Missense_Mutation p.R316L 0.50 deleterious(0.01) benign(0.403) TCGA-37-4135-01 2 33745744 33745744 T C RASGRP3 Missense_Mutation p.S121P 0.29 deleterious(0.02) probably_damaging(0.97) TCGA-37-4135-01 2 40656773 40656773 G T SLC8A1 Silent p.T216T 0.29 TCGA-37-4135-01 2 43452044 43452044 G C ZFP36L2 Missense_Mutation p.S300C 0.35 deleterious(0.01) unknown(0) TCGA-37-4135-01 2 48906637 48906637 T C STON1-GTF2A1L 3'UTR 0.55 TCGA-37-4135-01 2 7036064 7036064 G C RSAD2 Silent p.L359L 0.42 TCGA-37-4135-01 2 70443373 70443373 C T TIA1 Missense_Mutation p.R244Q 0.47 deleterious(0) possibly_damaging(0.875) TCGA-37-4135-01 2 72719551 72719551 C A EXOC6B Nonsense_Mutation p.E521* 0.34 TCGA-37-4135-01 2 74372367 74372367 G C BOLA3 Missense_Mutation p.L40V 0.28 deleterious(0) probably_damaging(1) TCGA-37-4135-01 2 90249302 90249302 C A IGKV1D-43 Silent p.G86G 0.83 TCGA-37-4135-01 2 95540614 95540614 G A TEKT4 Silent p.L269L 0.31 TCGA-37-4135-01 2 95542519 95542519 C T TEKT4 3'UTR 0.19 TCGA-37-4135-01 2 96993075 96993075 G C ITPRIPL1 Missense_Mutation p.D244H 0.11 tolerated(0.09) benign(0.016) TCGA-37-4135-01 2 96993224 96993224 G C ITPRIPL1 Silent p.L293L 0.11 TCGA-37-4135-01 2 96993431 96993431 G T ITPRIPL1 Silent p.L362L 0.10 TCGA-37-4135-01 3 109028102 109028102 G T DPPA2 Missense_Mutation p.P86Q 0.51 deleterious(0.01) probably_damaging(0.998) TCGA-37-4135-01 3 119325702 119325702 A C PLA1A Missense_Mutation p.Q52P 0.16 deleterious(0) probably_damaging(0.974) TCGA-37-4135-01 3 121304866 121304866 C A ARGFX Intron 0.33 TCGA-37-4135-01 3 122354719 122354719 C A PARP15 Silent p.T603T 0.36 TCGA-37-4135-01 3 124393514 124393514 C A KALRN 3'UTR 0.18 TCGA-37-4135-01 3 124720847 124720847 G A HEG1 Silent p.N1122N 0.24 TCGA-37-4135-01 3 128780998 128780998 T A GP9 Missense_Mutation p.L139Q 0.32 deleterious(0.02) probably_damaging(0.963) TCGA-37-4135-01 3 137816615 137816615 C T DZIP1L Silent p.V192V 0.28 TCGA-37-4135-01 3 140406900 140406900 C A TRIM42 Missense_Mutation p.T459N 0.31 tolerated(0.39) benign(0.001) TCGA-37-4135-01 3 170150353 170150353 G A CLDN11 Missense_Mutation p.A145T 0.24 tolerated(0.16) benign(0.018) TCGA-37-4135-01 3 170744448 170744448 A G SLC2A2 Silent p.D4D 0.45 TCGA-37-4135-01 3 171969199 171969199 A G FNDC3B Missense_Mutation p.T220A 0.50 tolerated(0.37) benign(0.002) TCGA-37-4135-01 3 172834952 172834952 C G SPATA16 Missense_Mutation p.K190N 0.20 tolerated(0.23) possibly_damaging(0.607) TCGA-37-4135-01 3 179311590 179311590 C G MRPL47 Missense_Mutation p.G166R 0.11 deleterious(0) probably_damaging(1) TCGA-37-4135-01 3 182841929 182841929 C A LAMP3 Missense_Mutation p.M397I 0.34 tolerated(0.44) benign(0.001) TCGA-37-4135-01 3 183899529 183899529 T C AP2M1 Silent p.C251C 0.04 TCGA-37-4135-01 3 194408707 194408707 C A FAM43A Silent p.G384G 0.25 TCGA-37-4135-01 3 25648771 25648771 C G TOP2B Missense_Mutation p.V1392L 0.89 tolerated_low_confidence(0.5) benign(0.003) TCGA-37-4135-01 3 38044024 38044024 C G VILL Missense_Mutation p.F539L 0.43 deleterious(0) probably_damaging(0.998) TCGA-37-4135-01 3 46244914 46244914 G A CCR1 Silent p.N297N 0.80 TCGA-37-4135-01 3 49723334 49723334 G A MST1 Silent p.V403V 0.10 TCGA-37-4135-01 3 50339528 50339528 A T HYAL1 Missense_Mutation p.V287D 0.87 deleterious(0) possibly_damaging(0.777) TCGA-37-4135-01 3 9517717 9517717 A T SETD5 Missense_Mutation p.Q1424L 0.93 deleterious(0.01) benign(0.218) TCGA-37-4135-01 3 95374304 95374304 C A MTHFD2P1 RNA 0.24 TCGA-37-4135-01 4 106534585 106534585 C G ARHGEF38 Silent p.S143S 0.43 TCGA-37-4135-01 4 121702330 121702330 C A PRDM5 Missense_Mutation p.V471F 0.77 tolerated(0.07) probably_damaging(0.995) TCGA-37-4135-01 4 123270434 123270434 G T KIAA1109 Nonsense_Mutation p.G4468* 0.33 TCGA-37-4135-01 4 164050110 164050110 G A NAF1 Missense_Mutation p.P475L 0.57 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-37-4135-01 4 187628543 187628543 G A FAT1 Silent p.V813V 0.40 TCGA-37-4135-01 4 39064185 39064185 A G KLHL5 Silent p.A17A 0.76 TCGA-37-4135-01 4 41640961 41640961 A T LIMCH1 Missense_Mutation p.R316S 0.73 tolerated(0.19) probably_damaging(0.913) TCGA-37-4135-01 4 44685270 44685270 G A GUF1 Missense_Mutation p.D202N 0.23 tolerated(0.22) benign(0.2) TCGA-37-4135-01 4 44724131 44724131 C - GNPDA2 Frame_Shift_Del p.D32Tfs*15 0.33 TCGA-37-4135-01 4 6303493 6303493 G C WFS1 Missense_Mutation p.M657I 0.03 deleterious(0.04) benign(0.104) TCGA-37-4135-01 4 88755857 88755857 A G MEPE Intron 0.82 TCGA-37-4135-01 4 88996004 88996004 A G PKD2 Missense_Mutation p.S855G 0.81 tolerated(0.33) probably_damaging(0.968) TCGA-37-4135-01 5 11364982 11364985 TGTA - CTNND2 Frame_Shift_Del p.Y399Afs*21 0.50 TCGA-37-4135-01 5 11397198 11397198 G T CTNND2 Nonsense_Mutation p.S186* 0.41 TCGA-37-4135-01 5 1232415 1232415 G T SLC6A18 Missense_Mutation p.R81L 0.41 tolerated(0.06) benign(0.409) TCGA-37-4135-01 5 132409706 132409706 A G HSPA4 Missense_Mutation p.Y184C 0.83 deleterious(0) probably_damaging(1) TCGA-37-4135-01 5 137680859 137680859 A G FAM53C Missense_Mutation p.Q161R 0.84 tolerated(0.13) possibly_damaging(0.607) TCGA-37-4135-01 5 140558631 140558631 T C PCDHB8 Missense_Mutation p.I339T 0.15 tolerated_low_confidence(0.35) benign(0) TCGA-37-4135-01 5 140720804 140720804 G T PCDHGA2 Nonsense_Mutation p.E756* 0.86 TCGA-37-4135-01 5 156957872 156957872 C A ADAM19 Missense_Mutation p.G117V 0.80 deleterious(0) probably_damaging(1) TCGA-37-4135-01 5 182161 182161 A T PLEKHG4B Missense_Mutation p.H1180L 0.37 deleterious(0) possibly_damaging(0.548) TCGA-37-4135-01 5 19591263 19591263 G A CDH18 Missense_Mutation p.A301V 0.48 deleterious(0) probably_damaging(0.999) TCGA-37-4135-01 5 31323238 31323238 C T CDH6 Silent p.Y732Y 0.20 TCGA-37-4135-01 5 34042990 34042990 G C C1QTNF3 Missense_Mutation p.P81A 0.20 deleterious_low_confidence(0.01) benign(0.019) TCGA-37-4135-01 5 36684019 36684019 T A SLC1A3 Missense_Mutation p.L448Q 0.43 deleterious(0) probably_damaging(1) TCGA-37-4135-01 5 40832566 40832566 A T RPL37 3'UTR 0.47 TCGA-37-4135-01 5 41008872 41008872 C A MROH2B Silent p.V1148V 0.24 TCGA-37-4135-01 5 43506365 43506365 A G C5orf34 Silent p.S139S 0.22 TCGA-37-4135-01 5 5306799 5306799 G A ADAMTS16 Silent p.A1123A 0.36 TCGA-37-4135-01 5 5463581 5463581 G T KIAA0947 Missense_Mutation p.M1378I 0.45 tolerated(0.08) benign(0) TCGA-37-4135-01 5 5463582 5463582 G C KIAA0947 Missense_Mutation p.E1379Q 0.44 tolerated(0.47) benign(0.07) TCGA-37-4135-01 5 6607388 6607388 C A NSUN2 Missense_Mutation p.G478V 0.45 tolerated(0.14) benign(0.013) TCGA-37-4135-01 5 83360518 83360518 C T EDIL3 Splice_Site p.X318_splice 0.86 TCGA-37-4135-01 6 109797403 109797403 T C ZBTB24 Silent p.L393L 0.24 TCGA-37-4135-01 6 130536420 130536420 G T SAMD3 5'UTR 0.22 TCGA-37-4135-01 6 147581765 147581765 A T STXBP5 Missense_Mutation p.H149L 0.60 deleterious(0) benign(0.053) TCGA-37-4135-01 6 150147466 150147466 C A LRP11 Nonsense_Mutation p.E428* 0.46 TCGA-37-4135-01 6 150289920 150289920 A T ULBP1 Missense_Mutation p.E88V 0.36 deleterious(0) probably_damaging(0.949) TCGA-37-4135-01 6 153076434 153076434 C A VIP Silent p.T87T 0.33 TCGA-37-4135-01 6 163510295 163510295 C T PACRG Silent p.A156A 0.46 TCGA-37-4135-01 6 166580194 166580194 C T T Silent p.A119A 0.24 TCGA-37-4135-01 6 167570777 167570777 G C GPR31 Silent p.L181L 0.47 TCGA-37-4135-01 6 27839938 27839938 G A HIST1H3I Silent p.I52I 0.20 TCGA-37-4135-01 6 30166457 30166457 C T TRIM26 Missense_Mutation p.A142T 0.62 deleterious(0) probably_damaging(0.963) TCGA-37-4135-01 6 32977350 32977350 G T HLA-DOA 5'UTR 0.17 TCGA-37-4135-01 6 37605928 37605929 - A MDGA1 Intron 0.53 TCGA-37-4135-01 6 39272395 39272395 C A KCNK17 Missense_Mutation p.R130L 0.21 deleterious(0) probably_damaging(0.993) TCGA-37-4135-01 6 41029512 41029512 G T APOBEC2 Nonsense_Mutation p.E193* 0.05 TCGA-37-4135-01 6 42821415 42821415 G C GLTSCR1L Missense_Mutation p.G662A 0.31 tolerated(0.15) benign(0.423) TCGA-37-4135-01 6 54173458 54173458 G A TINAG Missense_Mutation p.R37K 0.26 tolerated(0.14) benign(0.001) TCGA-37-4135-01 6 55264052 55264052 G T GFRAL Nonsense_Mutation p.G343* 0.33 TCGA-37-4135-01 6 6318807 6318807 C A F13A1 Nonsense_Mutation p.E31* 0.54 TCGA-37-4135-01 6 80744784 80744784 A G TTK Missense_Mutation p.D566G 0.22 deleterious(0) benign(0.159) TCGA-37-4135-01 6 88853833 88853833 C T CNR1 Silent p.L387L 0.20 TCGA-37-4135-01 6 90450019 90450019 C T MDN1 Silent p.L1509L 0.21 TCGA-37-4135-01 7 100551768 100551768 G T MUC3A Missense_Mutation p.L173F 0.44 tolerated(0.18) possibly_damaging(0.86) TCGA-37-4135-01 7 100684789 100684789 T G MUC17 Silent p.P3364P 0.66 TCGA-37-4135-01 7 100686302 100686302 A T MUC17 Missense_Mutation p.T3869S 0.19 benign(0.001) TCGA-37-4135-01 7 103270438 103270438 C G RELN Missense_Mutation p.G884A 0.67 tolerated(0.31) probably_damaging(0.998) TCGA-37-4135-01 7 111846793 111846793 G T ZNF277 Missense_Mutation p.G8W 0.10 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-37-4135-01 7 122634777 122634777 G T TAS2R16 3'UTR 0.65 TCGA-37-4135-01 7 131831444 131831444 T A PLXNA4 Missense_Mutation p.Y1627F 0.21 tolerated(0.69) possibly_damaging(0.462) TCGA-37-4135-01 7 136700215 136700215 C G CHRM2 Missense_Mutation p.I201M 0.22 deleterious(0) probably_damaging(0.997) TCGA-37-4135-01 7 138522834 138522834 C T KIAA1549 Silent p.E1890E 0.72 TCGA-37-4135-01 7 140051345 140051345 T C SLC37A3 Intron 0.26 TCGA-37-4135-01 7 142099544 142099544 T A TRBV7-8 Silent p.A86A 0.63 TCGA-37-4135-01 7 142143815 142143815 C A TRBV6-7 Missense_Mutation p.G61W 0.57 deleterious(0) probably_damaging(0.999) TCGA-37-4135-01 7 142148976 142148976 C T TRBV5-5 Missense_Mutation p.A99T 0.20 tolerated(0.4) benign(0.015) TCGA-37-4135-01 7 143096796 143096796 C T EPHA1 Silent p.R261R 0.19 TCGA-37-4135-01 7 143826379 143826379 G C OR2A14 Missense_Mutation p.M58I 0.67 deleterious(0) possibly_damaging(0.666) TCGA-37-4135-01 7 150269350 150269350 C T GIMAP4 Silent p.S64S 0.74 TCGA-37-4135-01 7 2617950 2617950 G T IQCE Missense_Mutation p.R180S 0.17 deleterious(0) probably_damaging(0.995) TCGA-37-4135-01 7 30363339 30363339 G T ZNRF2 Missense_Mutation p.R184L 0.74 deleterious(0.03) benign(0.09) TCGA-37-4135-01 7 34192975 34192975 G T BMPER 3'UTR 0.64 TCGA-37-4135-01 7 4856057 4856057 G T RADIL Missense_Mutation p.P590T 0.56 deleterious(0) probably_damaging(1) TCGA-37-4135-01 7 48684210 48684210 T C ABCA13 Intron 0.88 TCGA-37-4135-01 7 65599298 65599298 G A CRCP Missense_Mutation p.R59K 0.22 tolerated(0.92) benign(0.001) TCGA-37-4135-01 7 71488709 71488709 G T CALN1 Missense_Mutation p.P145H 0.70 deleterious(0) probably_damaging(0.999) TCGA-37-4135-01 7 72891461 72891465 CACAA ACACAT BAZ1B Frame_Shift_Ins p.L776Mfs*14 0.16 TCGA-37-4135-01 7 92730497 92730497 T A SAMD9 3'UTR 0.66 TCGA-37-4135-01 7 94053664 94053664 C T COL1A2 Missense_Mutation p.P861L 0.65 unknown(0) TCGA-37-4135-01 8 126034255 126034255 G A SQLE 3'UTR 0.67 TCGA-37-4135-01 8 144733669 144733669 G T ZNF623 3'UTR 0.55 TCGA-37-4135-01 8 144941086 144941086 C T EPPK1 Silent p.V2112V 0.28 TCGA-37-4135-01 8 145108014 145108014 C T OPLAH Missense_Mutation p.V964M 0.26 deleterious(0) probably_damaging(0.999) TCGA-37-4135-01 8 21978727 21978727 C A HR Missense_Mutation p.A740S 0.35 tolerated(0.73) benign(0.01) TCGA-37-4135-01 8 30040645 30040645 C T DCTN6 Silent p.L177L 0.71 TCGA-37-4135-01 8 72211919 72211919 C - EYA1 Frame_Shift_Del p.G198Efs*43 0.47 TCGA-37-4135-01 8 77763722 77763722 C A ZFHX4 Missense_Mutation p.P1522H 0.79 probably_damaging(0.95) TCGA-37-4135-01 8 77895774 77895774 T A PEX2 Missense_Mutation p.Q214L 0.87 tolerated(0.05) possibly_damaging(0.593) TCGA-37-4135-01 8 87588148 87588163 TTCTAACTGAGTGGGG - CNGB3 Frame_Shift_Del p.P767Gfs*57 0.78 TCGA-37-4135-01 8 87588225 87588225 G T CNGB3 Missense_Mutation p.P746Q 0.71 tolerated(0.11) possibly_damaging(0.671) TCGA-37-4135-01 9 130258289 130258289 C A LRSAM1 Nonsense_Mutation p.S582* 0.88 TCGA-37-4135-01 9 133507353 133507353 G T FUBP3 Silent p.G459G 0.83 TCGA-37-4135-01 9 14842532 14842532 C T FREM1 Missense_Mutation p.R507H 0.86 deleterious(0.05) benign(0.047) TCGA-37-4135-01 9 21971199 21971199 C G CDKN2A Missense_Mutation p.M53I 0.79 deleterious(0) probably_damaging(0.943) TCGA-37-4135-01 9 93979600 93979600 C A AUH Missense_Mutation p.A285S 0.84 deleterious(0.02) probably_damaging(0.992) TCGA-37-4135-01 9 990075 990075 G C DMRT3 Silent p.S163S 0.90 TCGA-37-4135-01 X 111024417 111024417 G T TRPC5 Missense_Mutation p.S706R 0.85 tolerated(0.27) benign(0.002) TCGA-37-4135-01 X 12738680 12738680 G T FRMPD4 3'UTR 0.94 TCGA-37-4135-01 X 12827451 12827451 G A PRPS2 Silent p.Q138Q 0.47 TCGA-37-4135-01 X 129801610 129801610 G C ENOX2 Silent p.A296A 0.42 TCGA-37-4135-01 X 135593704 135593704 C T HTATSF1 Silent p.S600S 0.46 TCGA-37-4135-01 X 138724800 138724800 G T MCF2 Intron 0.91 TCGA-37-4135-01 X 148664901 148664901 C A MAGEA9B Splice_Site 0.43 TCGA-37-4135-01 X 148797850 148797850 G T MAGEA11 Missense_Mutation p.R235L 0.95 tolerated(0.66) benign(0) TCGA-37-4135-01 X 151366222 151366222 T G GABRA3 Missense_Mutation p.K272Q 0.89 tolerated(0.39) probably_damaging(0.998) TCGA-37-4135-01 X 152981080 152981080 G A BCAP31 Silent p.P153P 0.92 TCGA-37-4135-01 X 155003858 155003858 G T SPRY3 Missense_Mutation p.G109C 0.88 deleterious(0) probably_damaging(0.91) TCGA-37-4135-01 X 16685639 16685639 G C CTPS2 Missense_Mutation p.L432V 0.92 tolerated(1) benign(0.001) TCGA-37-4135-01 X 21627350 21627350 G C CNKSR2 Missense_Mutation p.Q769H 0.92 tolerated(0.07) benign(0.179) TCGA-37-4135-01 X 27766034 27766034 C G DCAF8L2 Missense_Mutation p.A341G 0.91 tolerated(0.21) benign(0.092) TCGA-37-4135-01 X 37663199 37663199 C A CYBB Missense_Mutation p.Q323K 0.87 deleterious(0) probably_damaging(0.99) TCGA-37-4135-01 X 50129357 50129357 T A DGKK Intron 0.37 TCGA-37-4135-01 X 70343465 70343465 G C MED12 Missense_Mutation p.A547P 0.94 benign(0.048) TCGA-37-4135-01 X 79277824 79277824 C A TBX22 Missense_Mutation p.P19H 0.88 deleterious(0.01) possibly_damaging(0.778) TCGA-37-4135-01 X 79281106 79281106 G C TBX22 Missense_Mutation p.V155L 0.93 deleterious(0.02) possibly_damaging(0.87) TCGA-37-4135-01 X 86924279 86924279 C A KLHL4 Intron 0.92 TCGA-37-4135-01 Y 6736492 6736492 A G AMELY Silent p.Y53Y 0.94 TCGA-37-4141-01 10 101560276 101560276 G T ABCC2 Missense_Mutation p.G389C 0.36 deleterious(0) probably_damaging(1) TCGA-37-4141-01 10 102781698 102781698 C T PDZD7 Missense_Mutation p.D242N 0.34 deleterious(0) probably_damaging(0.988) TCGA-37-4141-01 10 102987051 102987051 G A LBX1 Silent p.D274D 0.44 TCGA-37-4141-01 10 118203937 118203937 G T PNLIPRP3 Missense_Mutation p.W123L 0.35 deleterious(0.02) probably_damaging(1) TCGA-37-4141-01 10 118434813 118434813 G T HSPA12A Silent p.R503R 0.40 TCGA-37-4141-01 10 129877825 129877825 G A PTPRE Missense_Mutation p.A632T 0.29 deleterious(0.02) possibly_damaging(0.757) TCGA-37-4141-01 10 15614302 15614302 G T ITGA8 Silent p.R849R 0.38 TCGA-37-4141-01 10 17152947 17152947 C A CUBN Missense_Mutation p.G329V 0.25 deleterious(0) probably_damaging(0.999) TCGA-37-4141-01 10 17152948 17152948 C G CUBN Missense_Mutation p.G329R 0.26 deleterious(0) probably_damaging(1) TCGA-37-4141-01 10 18292314 18292314 T - SLC39A12 Intron 0.20 TCGA-37-4141-01 10 22209861 22209861 C G DNAJC1 Missense_Mutation p.D135H 0.34 deleterious(0) probably_damaging(1) TCGA-37-4141-01 10 38466898 38466898 T C RP11-508N22.9 RNA 0.45 TCGA-37-4141-01 10 46121631 46121631 C A ZFAND4 Missense_Mutation p.R547L 0.38 deleterious(0) possibly_damaging(0.741) TCGA-37-4141-01 10 73563143 73563143 G A CDH23 Missense_Mutation p.R373H 0.25 deleterious(0.02) possibly_damaging(0.762) TCGA-37-4141-01 10 7860717 7860717 G T TAF3 Silent p.A15A 0.58 TCGA-37-4141-01 10 81270299 81270299 G T AL133481.1 Silent p.A7A 0.46 TCGA-37-4141-01 10 96534956 96534956 G C CYP2C19 Missense_Mutation p.E104Q 0.33 tolerated(0.07) benign(0.021) TCGA-37-4141-01 10 97440360 97440360 T G TCTN3 Missense_Mutation p.N487H 0.42 tolerated(0.31) benign(0.009) TCGA-37-4141-01 10 99695956 99695956 T C CRTAC1 Missense_Mutation p.Y131C 0.29 deleterious(0) probably_damaging(0.987) TCGA-37-4141-01 11 108384166 108384166 G C EXPH5 Missense_Mutation p.P690A 0.41 tolerated(0.29) benign(0.106) TCGA-37-4141-01 11 11292798 11292798 C A GALNT18 Nonsense_Mutation p.E573* 0.58 TCGA-37-4141-01 11 113102370 113102370 C T NCAM1 Silent p.L414L 0.22 TCGA-37-4141-01 11 114113012 114113012 C A ZBTB16 Missense_Mutation p.T526N 0.35 tolerated(0.31) possibly_damaging(0.637) TCGA-37-4141-01 11 123676703 123676704 - A OR6M1 Frame_Shift_Ins p.D119* 0.36 TCGA-37-4141-01 11 130341141 130341141 C T ADAMTS15 Silent p.S647S 0.40 TCGA-37-4141-01 11 132398959 132398959 G T OPCML Silent p.V174V 0.35 TCGA-37-4141-01 11 55111377 55111377 C A OR4A16 Missense_Mutation p.A234D 0.30 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-37-4141-01 11 55703186 55703186 G A OR5I1 Missense_Mutation p.R231C 0.42 deleterious(0.03) possibly_damaging(0.745) TCGA-37-4141-01 11 55904850 55904850 C T OR8J3 Silent p.L115L 0.32 TCGA-37-4141-01 11 58125912 58125912 C G OR5B17 Missense_Mutation p.V211L 0.41 deleterious_low_confidence(0.04) possibly_damaging(0.517) TCGA-37-4141-01 11 58477922 58477922 C G GLYAT Intron 0.16 TCGA-37-4141-01 11 59189633 59189633 G C OR5A2 Missense_Mutation p.S265C 0.36 deleterious(0) probably_damaging(0.989) TCGA-37-4141-01 11 60470880 60470880 C A MS4A8 Missense_Mutation p.H83Q 0.36 deleterious(0) probably_damaging(0.995) TCGA-37-4141-01 11 61672267 61672267 G C RAB3IL1 Missense_Mutation p.R249G 0.20 deleterious(0) possibly_damaging(0.669) TCGA-37-4141-01 11 62159824 62159824 C T ASRGL1 3'UTR 0.42 TCGA-37-4141-01 11 65630596 65630596 G T MUS81 Silent p.L222L 0.36 TCGA-37-4141-01 11 6648382 6648382 C T DCHS1 Missense_Mutation p.S1963N 0.57 tolerated(0.13) possibly_damaging(0.717) TCGA-37-4141-01 11 6652605 6652605 T A DCHS1 Missense_Mutation p.T1237S 0.57 tolerated(0.33) benign(0.021) TCGA-37-4141-01 11 68174200 68174200 G T LRP5 Silent p.P670P 0.40 TCGA-37-4141-01 11 68773465 68773465 C A MRGPRF Missense_Mutation p.G105W 0.42 tolerated(0.09) probably_damaging(1) TCGA-37-4141-01 11 74800303 74800303 A T OR2AT4 Missense_Mutation p.S152R 0.41 deleterious(0.04) benign(0.082) TCGA-37-4141-01 11 76826625 76826625 G A CAPN5 Nonsense_Mutation p.W295* 0.47 TCGA-37-4141-01 11 77727702 77727702 C T KCTD14 Silent p.T235T 0.47 TCGA-37-4141-01 11 85627088 85627088 C G CCDC83 Missense_Mutation p.Q329E 0.32 tolerated(0.35) benign(0.004) TCGA-37-4141-01 11 89424614 89424614 G T FOLH1B Splice_Site 0.36 TCGA-37-4141-01 11 89531664 89531664 C A TRIM49 Missense_Mutation p.W331C 0.28 deleterious(0.01) possibly_damaging(0.827) TCGA-37-4141-01 11 89774352 89774352 G T TRIM49C Missense_Mutation p.W331C 0.12 deleterious(0.02) benign(0.151) TCGA-37-4141-01 12 100795605 100795605 C A SLC17A8 Missense_Mutation p.Q243K 0.49 tolerated(0.14) benign(0.163) TCGA-37-4141-01 12 104149394 104149394 G A STAB2 Silent p.V2295V 0.61 TCGA-37-4141-01 12 108169159 108169159 C G ASCL4 Missense_Mutation p.A56G 0.54 tolerated(0.26) benign(0.015) TCGA-37-4141-01 12 11546395 11546395 G - PRB2 Frame_Shift_Del p.P206Hfs*225 0.37 TCGA-37-4141-01 12 130919366 130919366 G A RIMBP2 Silent p.D705D 0.68 TCGA-37-4141-01 12 15702147 15702147 C A PTPRO Silent p.A808A 0.59 TCGA-37-4141-01 12 21229394 21229394 C G SLCO1B7 Missense_Mutation p.L539V 0.62 tolerated(0.18) possibly_damaging(0.772) TCGA-37-4141-01 12 2692027 2692027 G T CACNA1C Missense_Mutation p.G715W 0.63 deleterious(0) probably_damaging(1) TCGA-37-4141-01 12 40037721 40037721 T A C12orf40 Splice_Site p.X68_splice 0.43 TCGA-37-4141-01 12 49444881 49444934 GGGGACAGGGGTGGCTTCTCAAGCTCAGGGGACAGATGCGATTCCTCAGGCCGG - KMT2D In_Frame_Del p.E848_E865del 0.20 TCGA-37-4141-01 12 50860745 50860745 C G LARP4 Missense_Mutation p.P463A 0.52 deleterious(0.01) benign(0.287) TCGA-37-4141-01 12 54912486 54912486 A T NCKAP1L Missense_Mutation p.S464C 0.56 deleterious(0) probably_damaging(0.95) TCGA-37-4141-01 12 55759647 55759647 T A OR6C75 Missense_Mutation p.S251R 0.55 deleterious_low_confidence(0) benign(0.006) TCGA-37-4141-01 12 57989764 57989764 T C PIP4K2C Missense_Mutation p.S155P 0.64 deleterious(0.01) probably_damaging(0.966) TCGA-37-4141-01 12 6778300 6778300 C T ZNF384 Missense_Mutation p.R410Q 0.56 deleterious(0.04) probably_damaging(0.995) TCGA-37-4141-01 12 73046262 73046262 T A TRHDE Missense_Mutation p.L901I 0.10 deleterious(0.01) benign(0.358) TCGA-37-4141-01 12 8075586 8075586 C A SLC2A3 Missense_Mutation p.G368V 0.51 tolerated(1) benign(0.004) TCGA-37-4141-01 12 8330040 8330040 G A ZNF705A Missense_Mutation p.C255Y 0.53 deleterious(0) benign(0.265) TCGA-37-4141-01 12 9094381 9094381 A T M6PR 3'UTR 0.58 TCGA-37-4141-01 12 99640279 99640279 C A ANKS1B Missense_Mutation p.G707V 0.51 deleterious(0.01) benign(0.04) TCGA-37-4141-01 13 101890194 101890194 G T NALCN Missense_Mutation p.S449Y 0.37 deleterious(0) probably_damaging(0.972) TCGA-37-4141-01 13 102367913 102367913 G A ITGBL1 Missense_Mutation p.G465E 0.29 tolerated(0.07) probably_damaging(0.999) TCGA-37-4141-01 13 23985423 23985423 C A SACS 5'UTR 0.34 TCGA-37-4141-01 13 39264593 39264593 G T FREM2 Missense_Mutation p.D1038Y 0.36 deleterious(0) possibly_damaging(0.886) TCGA-37-4141-01 13 39454818 39454818 G T FREM2 Missense_Mutation p.C3135F 0.30 tolerated_low_confidence(0.45) benign(0.006) TCGA-37-4141-01 13 46067577 46067577 G A COG3 Missense_Mutation p.G428E 0.28 tolerated(0.11) benign(0.164) TCGA-37-4141-01 13 50265552 50265552 A G EBPL Silent p.A3A 0.24 TCGA-37-4141-01 13 50495673 50495673 C A SPRYD7 Missense_Mutation p.G145V 0.32 deleterious(0) possibly_damaging(0.876) TCGA-37-4141-01 13 67802100 67802100 T - PCDH9 Frame_Shift_Del p.N158Tfs*25 0.35 TCGA-37-4141-01 13 78474726 78474726 G - EDNRB Frame_Shift_Del p.L429Ffs*7 0.36 TCGA-37-4141-01 13 80911698 80911698 G C SPRY2 Missense_Mutation p.A48G 0.35 deleterious(0.01) benign(0.188) TCGA-37-4141-01 13 88327697 88327697 G A SLITRK5 Missense_Mutation p.M18I 0.34 deleterious(0.02) benign(0.269) TCGA-37-4141-01 13 99047633 99047633 G T FARP1 Missense_Mutation p.Q439H 0.42 tolerated(0.3) benign(0.001) TCGA-37-4141-01 14 106054595 106054595 C G IGHA2 Missense_Mutation p.Q46H 0.33 tolerated(0.09) possibly_damaging(0.569) TCGA-37-4141-01 14 106311969 106311969 A G IGHD Missense_Mutation p.C15R 0.35 deleterious_low_confidence(0.03) possibly_damaging(0.739) TCGA-37-4141-01 14 107199225 107199225 G T IGHV3-72 Missense_Mutation p.Q22K 0.35 tolerated_low_confidence(0.17) benign(0.006) TCGA-37-4141-01 14 22592108 22592108 A C TRAV26-1 Missense_Mutation p.I65L 0.35 deleterious(0.01) benign(0.28) TCGA-37-4141-01 14 33291723 33291723 T G AKAP6 Missense_Mutation p.I1568M 0.32 deleterious(0) benign(0.299) TCGA-37-4141-01 14 37180664 37180664 T A SLC25A21 Silent p.A154A 0.35 TCGA-37-4141-01 14 42373569 42373569 T A LRFN5 3'UTR 0.32 TCGA-37-4141-01 14 55312518 55312518 C A GCH1 Silent p.R198R 0.29 TCGA-37-4141-01 14 55312519 55312519 C A GCH1 Missense_Mutation p.R198L 0.29 tolerated(0.12) benign(0.031) TCGA-37-4141-01 14 61115580 61115580 G C SIX1 Missense_Mutation p.R110G 0.41 deleterious(0) probably_damaging(0.998) TCGA-37-4141-01 14 73718432 73718432 G T PAPLN Missense_Mutation p.R217L 0.40 deleterious(0.02) benign(0.232) TCGA-37-4141-01 14 79433705 79433705 C G NRXN3 Missense_Mutation p.Q605E 0.43 deleterious(0.01) benign(0.29) TCGA-37-4141-01 15 101567541 101567559 GGACGTGGGCAGCACCATC - LRRK1 Frame_Shift_Del p.D828Afs*9 0.27 TCGA-37-4141-01 15 25490529 25490529 A C SNORD115-40 3'Flank 0.56 TCGA-37-4141-01 15 38990597 38990597 C G C15orf53 Missense_Mutation p.R131G 0.52 tolerated_low_confidence(0.51) benign(0.019) TCGA-37-4141-01 15 45390241 45390241 C A DUOX2 Missense_Mutation p.Q1177H 0.61 tolerated(0.07) possibly_damaging(0.8) TCGA-37-4141-01 15 48766523 48766523 C T FBN1 Missense_Mutation p.C1380Y 0.64 probably_damaging(0.985) TCGA-37-4141-01 15 51750748 51750748 T A DMXL2 Missense_Mutation p.Q2697L 0.66 deleterious(0) probably_damaging(0.996) TCGA-37-4141-01 15 70957052 70957052 C G UACA Missense_Mutation p.Q1354H 0.61 deleterious(0.03) benign(0.027) TCGA-37-4141-01 15 74632057 74632057 G A CYP11A1 Missense_Mutation p.A343V 0.60 deleterious(0) probably_damaging(0.989) TCGA-37-4141-01 16 12571616 12571616 G T SNX29 Missense_Mutation p.R693L 0.24 deleterious(0) possibly_damaging(0.785) TCGA-37-4141-01 16 19659206 19659206 T G C16orf62 Splice_Site p.X765_splice 0.37 TCGA-37-4141-01 16 20387453 20387453 G T PDILT Missense_Mutation p.N160K 0.31 tolerated(0.1) benign(0.164) TCGA-37-4141-01 16 20808352 20808352 A G ACSM3 3'UTR 0.12 TCGA-37-4141-01 16 21065766 21065766 C A DNAH3 Silent p.G1338G 0.31 TCGA-37-4141-01 16 22314317 22314317 G T POLR3E Missense_Mutation p.V10L 0.42 tolerated(0.1) benign(0.079) TCGA-37-4141-01 16 30734316 30734316 G C SRCAP Missense_Mutation p.V1309L 0.10 benign(0.097) TCGA-37-4141-01 16 31160456 31160456 G C PRSS36 Missense_Mutation p.H70Q 0.56 deleterious(0.03) possibly_damaging(0.472) TCGA-37-4141-01 16 50828243 50828243 G T CYLD Missense_Mutation p.V864F 0.36 deleterious(0) probably_damaging(0.993) TCGA-37-4141-01 16 53524205 53524205 C - RBL2 Frame_Shift_Del p.H1139Tfs*8 0.35 TCGA-37-4141-01 16 69375718 69375718 C G NIP7 3'UTR 0.36 TCGA-37-4141-01 16 70998800 70998800 C A HYDIN Splice_Site p.X1874_splice 0.30 TCGA-37-4141-01 16 75268934 75268934 C G BCAR1 Silent p.L667L 0.35 TCGA-37-4141-01 16 75669923 75669923 C A KARS Missense_Mutation p.G214W 0.29 deleterious(0) probably_damaging(1) TCGA-37-4141-01 16 76311542 76311542 G T CNTNAP4 5'UTR 0.47 TCGA-37-4141-01 16 818455 818455 C A MSLN Missense_Mutation p.P566Q 0.15 deleterious(0) probably_damaging(0.998) TCGA-37-4141-01 17 17700660 17700660 G A RAI1 Silent p.R1466R 0.59 TCGA-37-4141-01 17 21217665 21217665 G T MAP2K3 3'UTR 0.28 TCGA-37-4141-01 17 28887175 28887175 G T TBC1D29 Missense_Mutation p.W18L 0.32 tolerated(0.06) possibly_damaging(0.803) TCGA-37-4141-01 17 37187612 37187612 A G CTD-2206N4.2 5'Flank 0.18 TCGA-37-4141-01 17 38938435 38938435 G T KRT27 Missense_Mutation p.A104D 0.03 deleterious(0) probably_damaging(1) TCGA-37-4141-01 17 39261756 39261756 G T KRTAP4-9 Missense_Mutation p.C39F 0.49 deleterious(0) unknown(0) TCGA-37-4141-01 17 41020088 41020088 T C AOC4P RNA 0.43 TCGA-37-4141-01 17 45668158 45668158 C T NPEPPS Missense_Mutation p.P391S 0.10 deleterious(0) probably_damaging(0.998) TCGA-37-4141-01 17 45994334 45994334 G C SP2 Missense_Mutation p.Q299H 0.06 deleterious(0) probably_damaging(0.997) TCGA-37-4141-01 17 63530190 63530191 - T AXIN2 Frame_Shift_Ins p.E749Rfs*15 0.38 TCGA-37-4141-01 17 67282383 67282383 C T ABCA5 Nonsense_Mutation p.W704* 0.53 TCGA-37-4141-01 17 72428277 72428277 G T GPRC5C Nonsense_Mutation p.G34* 0.40 TCGA-37-4141-01 17 72832362 72832362 G A TMEM104 Missense_Mutation p.A343T 0.40 tolerated(0.81) benign(0.005) TCGA-37-4141-01 17 72860614 72860614 C A FDXR Missense_Mutation p.D307Y 0.33 deleterious(0) possibly_damaging(0.448) TCGA-37-4141-01 17 7577556 7577556 C A TP53 Missense_Mutation p.C242F 0.49 deleterious(0) probably_damaging(1) TCGA-37-4141-01 17 76497715 76497715 C G DNAH17-AS1 3'UTR 0.33 TCGA-37-4141-01 17 79870473 79870473 A C SIRT7 Missense_Mutation p.F341C 0.20 deleterious(0) probably_damaging(0.927) TCGA-37-4141-01 18 22807238 22807238 C G ZNF521 Missense_Mutation p.S215T 0.43 deleterious(0.03) probably_damaging(0.977) TCGA-37-4141-01 18 44561184 44561184 G T TCEB3B Missense_Mutation p.P151H 0.31 tolerated(0.17) benign(0) TCGA-37-4141-01 18 63548089 63548089 G A CDH7 Missense_Mutation p.A773T 0.36 deleterious(0.01) probably_damaging(0.996) TCGA-37-4141-01 19 10468502 10468502 C A TYK2 Missense_Mutation p.A802S 0.38 deleterious(0.04) possibly_damaging(0.519) TCGA-37-4141-01 19 11114047 11114047 G T SMARCA4 Nonsense_Mutation p.E659* 0.48 TCGA-37-4141-01 19 17918884 17918884 C T B3GNT3 Missense_Mutation p.R90C 0.61 deleterious(0) probably_damaging(0.998) TCGA-37-4141-01 19 18726810 18726810 G T TMEM59L Missense_Mutation p.G145V 0.57 tolerated(0.21) possibly_damaging(0.826) TCGA-37-4141-01 19 20044388 20044388 A T ZNF93 Missense_Mutation p.K208N 0.59 deleterious(0.01) possibly_damaging(0.852) TCGA-37-4141-01 19 23159867 23159867 C A ZNF728 Missense_Mutation p.R91I 0.69 tolerated(1) benign(0) TCGA-37-4141-01 19 36017741 36017741 G - SBSN Frame_Shift_Del p.H481Qfs*65 0.44 TCGA-37-4141-01 19 4099227 4099227 C A MAP2K2 Silent p.R297R 0.59 TCGA-37-4141-01 19 41086391 41086391 G A SHKBP1 Missense_Mutation p.G188R 0.34 deleterious(0.01) benign(0.032) TCGA-37-4141-01 19 42353006 42353006 G C DMRTC2 Silent p.L197L 0.61 TCGA-37-4141-01 19 43762597 43762597 G T PSG9 Missense_Mutation p.L334I 0.69 tolerated(0.25) benign(0.05) TCGA-37-4141-01 19 44590676 44590676 G A ZNF284 Missense_Mutation p.G349R 0.61 deleterious(0) probably_damaging(1) TCGA-37-4141-01 19 53210037 53210037 G C ZNF611 Missense_Mutation p.Q91E 0.60 tolerated(1) benign(0.079) TCGA-37-4141-01 19 54251905 54251905 C T MIR521-1 RNA 0.51 TCGA-37-4141-01 19 54385555 54385555 C A PRKCG 5'UTR 0.43 TCGA-37-4141-01 19 55107869 55107869 T A LILRA1 Missense_Mutation p.S392T 0.65 tolerated(0.07) benign(0.008) TCGA-37-4141-01 19 56733262 56733262 C A ZSCAN5A Missense_Mutation p.K391N 0.62 deleterious(0.01) probably_damaging(0.935) TCGA-37-4141-01 19 58565155 58565155 G A ZSCAN1 Silent p.P321P 0.67 TCGA-37-4141-01 19 58579304 58579304 C A ZNF135 Missense_Mutation p.H508Q 0.62 deleterious(0) probably_damaging(0.996) TCGA-37-4141-01 19 9087266 9087266 A T MUC16 Missense_Mutation p.L1517M 0.05 unknown(0) TCGA-37-4141-01 19 9581175 9581175 C T ZNF560 Missense_Mutation p.S114N 0.66 deleterious(0.01) possibly_damaging(0.787) TCGA-37-4141-01 1 101377756 101377756 T G SLC30A7 Missense_Mutation p.V158G 0.34 deleterious(0.02) benign(0.142) TCGA-37-4141-01 1 103345240 103345240 G T COL11A1 Missense_Mutation p.A1758E 0.33 unknown(0) TCGA-37-4141-01 1 103481252 103481252 C A COL11A1 Missense_Mutation p.G487V 0.28 probably_damaging(1) TCGA-37-4141-01 1 109637043 109637043 T C TMEM167B Silent p.A49A 0.03 TCGA-37-4141-01 1 110255485 110255485 G A GSTM5 Intron 0.60 TCGA-37-4141-01 1 1274966 1274966 T C DVL1 Silent p.P350P 0.33 TCGA-37-4141-01 1 12820975 12820975 C G C1orf158 3'UTR 0.49 TCGA-37-4141-01 1 144917580 144917580 C G PDE4DIP Missense_Mutation p.Q508H 0.20 deleterious(0.02) benign(0.037) TCGA-37-4141-01 1 145534931 145534931 G A ITGA10 Missense_Mutation p.G612S 0.32 deleterious(0) probably_damaging(1) TCGA-37-4141-01 1 146466233 146466233 G T NBPF12 3'UTR 0.46 TCGA-37-4141-01 1 152191689 152191689 G A HRNR Missense_Mutation p.H806Y 0.33 unknown(0) TCGA-37-4141-01 1 163117134 163117134 A G RGS5 Nonstop_Mutation p.*186Qext*1 0.40 TCGA-37-4141-01 1 165386447 165386447 G T RXRG Nonsense_Mutation p.Y151* 0.42 TCGA-37-4141-01 1 167038337 167038337 G A GPA33 Silent p.Y79Y 0.29 TCGA-37-4141-01 1 17271961 17271961 A G CROCC Missense_Mutation p.R666G 0.12 possibly_damaging(0.839) TCGA-37-4141-01 1 175324640 175324640 T G TNR Missense_Mutation p.K1083T 0.34 deleterious(0.04) probably_damaging(1) TCGA-37-4141-01 1 182846038 182846038 A G DHX9 Missense_Mutation p.K733R 0.36 deleterious(0.03) probably_damaging(1) TCGA-37-4141-01 1 18808885 18808885 C G KLHDC7A Missense_Mutation p.D470E 0.37 tolerated(0.15) benign(0.015) TCGA-37-4141-01 1 193172941 193172941 G T CDC73 Missense_Mutation p.R330L 0.22 tolerated(0.13) benign(0.134) TCGA-37-4141-01 1 193172942 193172942 G T CDC73 Silent p.R330R 0.22 TCGA-37-4141-01 1 196748446 196748446 T C CFHR3 Silent p.H71H 0.41 TCGA-37-4141-01 1 209791299 209791299 G T LAMB3 Missense_Mutation p.Q1002K 0.35 tolerated(0.36) benign(0.004) TCGA-37-4141-01 1 211751527 211751527 T A SLC30A1 Missense_Mutation p.D143V 0.42 deleterious(0.04) benign(0.143) TCGA-37-4141-01 1 214171384 214171384 C T PROX1 Silent p.G502G 0.05 TCGA-37-4141-01 1 216074145 216074145 C A USH2A Missense_Mutation p.R2468I 0.37 possibly_damaging(0.487) TCGA-37-4141-01 1 220091756 220091756 G - SLC30A10 Frame_Shift_Del p.L267* 0.34 TCGA-37-4141-01 1 22913059 22913059 G A EPHA8 Missense_Mutation p.A304T 0.05 tolerated(0.09) benign(0.009) TCGA-37-4141-01 1 234445022 234445022 T C SLC35F3 Silent p.L262L 0.35 TCGA-37-4141-01 1 237961380 237961380 G T RYR2 Missense_Mutation p.S4667I 0.31 possibly_damaging(0.766) TCGA-37-4141-01 1 247875538 247875538 T C OR6F1 Missense_Mutation p.I174V 0.33 deleterious(0.04) probably_damaging(0.912) TCGA-37-4141-01 1 248129609 248129609 T A OR2AK2 Missense_Mutation p.C326S 0.29 tolerated(0.44) benign(0.004) TCGA-37-4141-01 1 25717382 25717382 C A RHCE Missense_Mutation p.W220L 0.33 deleterious(0) probably_damaging(0.997) TCGA-37-4141-01 1 34662994 34662994 C A C1orf94 Silent p.A163A 0.42 TCGA-37-4141-01 1 39818716 39818716 A G MACF1 Missense_Mutation p.K1684R 0.39 benign(0.144) TCGA-37-4141-01 1 42041309 42041309 C A HIVEP3 Missense_Mutation p.V1705L 0.31 benign(0.05) TCGA-37-4141-01 1 4772101 4772101 G A AJAP1 Silent p.P57P 0.39 TCGA-37-4141-01 1 59147875 59147875 G C MYSM1 Missense_Mutation p.Q281E 0.05 tolerated(0.69) benign(0.001) TCGA-37-4141-01 1 6158528 6158528 G T KCNAB2 Intron 0.41 TCGA-37-4141-01 1 63066783 63066783 G T ANGPTL3 Nonsense_Mutation p.E213* 0.35 TCGA-37-4141-01 1 6311556 6311556 G A GPR153 Missense_Mutation p.S274L 0.39 deleterious(0) benign(0.328) TCGA-37-4141-01 1 67142743 67142743 G T SGIP1 Nonsense_Mutation p.E235* 0.36 TCGA-37-4141-01 1 67411870 67411870 A T MIER1 Silent p.P77P 0.37 TCGA-37-4141-01 1 70504563 70504563 C A LRRC7 Missense_Mutation p.P981Q 0.33 tolerated(0.18) benign(0.008) TCGA-37-4141-01 1 75672357 75672357 C G SLC44A5 Missense_Mutation p.V699L 0.31 deleterious(0) benign(0.017) TCGA-37-4141-01 1 77510188 77510188 C A ST6GALNAC5 Missense_Mutation p.N187K 0.36 probably_damaging(0.982) TCGA-37-4141-01 1 77763405 77763405 G T AK5 Missense_Mutation p.A193S 0.34 deleterious(0.01) probably_damaging(0.994) TCGA-37-4141-01 1 78392291 78392291 G T NEXN Missense_Mutation p.V228F 0.05 deleterious(0.01) possibly_damaging(0.563) TCGA-37-4141-01 1 85028993 85028993 T G CTBS Missense_Mutation p.I302L 0.39 tolerated(0.88) benign(0.008) TCGA-37-4141-01 20 10603960 10603960 C G SLX4IP Missense_Mutation p.T387S 0.31 tolerated(0.17) benign(0.007) TCGA-37-4141-01 20 23016993 23016993 C T SSTR4 Silent p.T291T 0.29 TCGA-37-4141-01 20 23858245 23858245 C T CST5 Missense_Mutation p.G81E 0.40 deleterious(0.03) probably_damaging(0.998) TCGA-37-4141-01 20 24646078 24646078 G A SYNDIG1 Missense_Mutation p.G239S 0.33 deleterious(0.05) probably_damaging(0.971) TCGA-37-4141-01 20 30388912 30388912 G TCT TPX2 3'UTR 0.29 TCGA-37-4141-01 20 31394017 31394017 A G DNMT3B Silent p.L768L 0.41 TCGA-37-4141-01 20 36500353 36500353 C T CTNNBL1 Missense_Mutation p.R544W 0.32 deleterious(0.01) benign(0.355) TCGA-37-4141-01 20 42196603 42196603 G T SGK2 Missense_Mutation p.K124N 0.36 deleterious(0) probably_damaging(1) TCGA-37-4141-01 20 42744475 42744475 G T JPH2 Missense_Mutation p.P614T 0.38 deleterious(0.02) benign(0.003) TCGA-37-4141-01 20 44512705 44512705 A T ZSWIM1 3'UTR 0.36 TCGA-37-4141-01 20 46313280 46313280 G T SULF2 Silent p.I261I 0.39 TCGA-37-4141-01 20 47259002 47259002 C T PREX1 Silent p.R1209R 0.28 TCGA-37-4141-01 20 47269240 47269240 A T PREX1 Missense_Mutation p.L784Q 0.34 tolerated(0.1) benign(0.288) TCGA-37-4141-01 20 48600469 48600469 T A SNAI1 Missense_Mutation p.V64D 0.32 tolerated(0.2) benign(0.173) TCGA-37-4141-01 20 58514404 58514404 C A PPP1R3D Missense_Mutation p.V195L 0.38 deleterious(0) probably_damaging(0.999) TCGA-37-4141-01 20 62378332 62378332 G T ZBTB46 Missense_Mutation p.P574Q 0.32 tolerated_low_confidence(0.27) probably_damaging(0.965) TCGA-37-4141-01 21 28315775 28315775 A T ADAMTS5 Silent p.L443L 0.32 TCGA-37-4141-01 21 31654547 31654547 G T KRTAP24-1 Missense_Mutation p.P235H 0.37 deleterious(0.02) probably_damaging(0.953) TCGA-37-4141-01 21 31874332 31874332 C A KRTAP19-5 Missense_Mutation p.G26V 0.30 deleterious_low_confidence(0.01) unknown(0) TCGA-37-4141-01 21 37763859 37763859 C A CHAF1B Silent p.I90I 0.27 TCGA-37-4141-01 22 17288960 17288960 C A XKR3 Nonsense_Mutation p.E2* 0.33 TCGA-37-4141-01 22 18300435 18300435 C T MICAL3 Silent p.K1664K 0.39 TCGA-37-4141-01 22 23063529 23063529 G A IGLV3-19 Missense_Mutation p.R79Q 0.28 deleterious(0.03) possibly_damaging(0.664) TCGA-37-4141-01 22 26701973 26701973 C T SEZ6L Silent p.A459A 0.32 TCGA-37-4141-01 22 42538036 42538036 C G NDUFA6-AS1 3'Flank 0.16 TCGA-37-4141-01 22 43950942 43950942 C T EFCAB6 Missense_Mutation p.G1152D 0.63 tolerated(0.09) benign(0.008) TCGA-37-4141-01 2 100906843 100906843 C G LONRF2 Silent p.V599V 0.33 TCGA-37-4141-01 2 105900831 105900831 G C TGFBRAP1 Missense_Mutation p.Q355E 0.34 deleterious(0) possibly_damaging(0.781) TCGA-37-4141-01 2 110373346 110373346 A G SOWAHC Missense_Mutation p.K427R 0.06 tolerated(0.62) benign(0.079) TCGA-37-4141-01 2 116534783 116534783 G T DPP10 Splice_Site p.X412_splice 0.43 TCGA-37-4141-01 2 11733133 11733133 C G GREB1 Missense_Mutation p.A526G 0.21 tolerated(0.21) benign(0.317) TCGA-37-4141-01 2 119735500 119735500 T G MARCO Missense_Mutation p.L252R 0.19 tolerated(0.06) probably_damaging(0.995) TCGA-37-4141-01 2 125175154 125175154 C A CNTNAP5 Nonsense_Mutation p.Y172* 0.48 TCGA-37-4141-01 2 125175156 125175156 G A CNTNAP5 Missense_Mutation p.G173E 0.50 deleterious(0) probably_damaging(1) TCGA-37-4141-01 2 131356354 131356354 C G CFC1 Missense_Mutation p.E36D 0.13 tolerated(0.06) benign(0.099) TCGA-37-4141-01 2 131976356 131976356 C A POTEE Silent p.A127A 0.55 TCGA-37-4141-01 2 136575347 136575347 G T LCT Missense_Mutation p.A424E 0.41 tolerated(1) benign(0.101) TCGA-37-4141-01 2 141215062 141215062 G C LRP1B Missense_Mutation p.Q3262E 0.20 benign(0.042) TCGA-37-4141-01 2 141771249 141771249 G T LRP1B Missense_Mutation p.F752L 0.13 benign(0.153) TCGA-37-4141-01 2 164467369 164467369 C A FIGN Missense_Mutation p.G325W 0.50 deleterious(0.01) probably_damaging(1) TCGA-37-4141-01 2 166231454 166231454 G C SCN2A Missense_Mutation p.G1411A 0.19 deleterious(0.03) probably_damaging(1) TCGA-37-4141-01 2 1680797 1680797 G A PXDN Silent p.S250S 0.40 TCGA-37-4141-01 2 179397670 179397670 G A TTN Missense_Mutation p.R34558C 0.49 TCGA-37-4141-01 2 179578804 179578804 T C TTN Missense_Mutation p.T8861A 0.25 TCGA-37-4141-01 2 179612908 179612908 G A TTN Intron 0.41 TCGA-37-4141-01 2 1812863 1812863 G C MYT1L Missense_Mutation p.Q1051E 0.37 tolerated(0.27) possibly_damaging(0.798) TCGA-37-4141-01 2 186672547 186672547 G T FSIP2 Missense_Mutation p.D6261Y 0.44 benign(0.002) TCGA-37-4141-01 2 190532263 190532263 A G ASNSD1 Missense_Mutation p.R469G 0.50 deleterious(0.01) possibly_damaging(0.558) TCGA-37-4141-01 2 1915841 1915841 C A MYT1L Missense_Mutation p.G552C 0.40 deleterious(0) probably_damaging(0.997) TCGA-37-4141-01 2 197184220 197184220 G C HECW2 Nonsense_Mutation p.S465* 0.51 TCGA-37-4141-01 2 219267090 219267090 T G CTDSP1 Missense_Mutation p.F114V 0.43 deleterious(0) probably_damaging(0.98) TCGA-37-4141-01 2 220283366 220283366 G T DES Missense_Mutation p.G61V 0.46 tolerated(0.54) unknown(0) TCGA-37-4141-01 2 225339077 225339077 T A CUL3 Missense_Mutation p.K731M 0.53 deleterious(0) probably_damaging(0.984) TCGA-37-4141-01 2 228884548 228884548 G T SPHKAP Missense_Mutation p.P341Q 0.16 tolerated(0.44) possibly_damaging(0.786) TCGA-37-4141-01 2 228884549 228884549 G T SPHKAP Missense_Mutation p.P341T 0.16 tolerated(0.42) benign(0.434) TCGA-37-4141-01 2 241463551 241463551 T C ANKMY1 Missense_Mutation p.K439R 0.49 tolerated(0.54) benign(0.008) TCGA-37-4141-01 2 26699110 26699110 G T OTOF Missense_Mutation p.L918I 0.32 tolerated(0.17) possibly_damaging(0.795) TCGA-37-4141-01 2 28828788 28828788 G C PLB1 Missense_Mutation p.Q1010H 0.37 deleterious(0.02) probably_damaging(0.987) TCGA-37-4141-01 2 48063100 48063100 T C FBXO11 Missense_Mutation p.M210V 0.37 deleterious(0.03) benign(0.002) TCGA-37-4141-01 2 48573872 48573872 G - FOXN2 Frame_Shift_Del p.E174Kfs*28 0.31 TCGA-37-4141-01 2 61607309 61607309 T A USP34 Missense_Mutation p.I337L 0.38 deleterious(0.01) benign(0.01) TCGA-37-4141-01 2 6991813 6991813 A T CMPK2 Missense_Mutation p.Y332N 0.29 deleterious(0) probably_damaging(0.992) TCGA-37-4141-01 2 71043874 71043874 G T CLEC4F Missense_Mutation p.H213Q 0.39 tolerated(0.44) possibly_damaging(0.713) TCGA-37-4141-01 2 73161149 73161149 C A EMX1 3'UTR 0.26 TCGA-37-4141-01 2 75118043 75118043 G A HK2 Missense_Mutation p.R910H 0.42 deleterious(0) probably_damaging(0.971) TCGA-37-4141-01 2 77745778 77745778 G - LRRTM4 Frame_Shift_Del p.P406Qfs*33 0.27 TCGA-37-4141-01 2 79253881 79253881 G A REG3G Missense_Mutation p.C40Y 0.42 deleterious(0.03) possibly_damaging(0.835) TCGA-37-4141-01 2 80085205 80085205 C T CTNNA2 Missense_Mutation p.T122I 0.36 tolerated(0.24) benign(0.189) TCGA-37-4141-01 2 8871992 8871992 C A KIDINS220 Missense_Mutation p.A1392S 0.32 tolerated_low_confidence(0.25) benign(0.078) TCGA-37-4141-01 2 96260880 96260880 C T TRIM43 Missense_Mutation p.A165V 0.28 tolerated(0.39) benign(0.003) TCGA-37-4141-01 2 96780641 96780641 G C ADRA2B Missense_Mutation p.S416R 0.14 deleterious(0) probably_damaging(0.976) TCGA-37-4141-01 2 98928769 98928769 C A VWA3B Missense_Mutation p.T1281N 0.33 deleterious_low_confidence(0.04) benign(0) TCGA-37-4141-01 3 105438956 105438956 C A CBLB Missense_Mutation p.D448Y 0.27 deleterious(0) probably_damaging(0.984) TCGA-37-4141-01 3 125216958 125216958 C A SNX4 Missense_Mutation p.S115I 0.23 deleterious(0.04) benign(0.252) TCGA-37-4141-01 3 130095339 130095339 G T COL6A5 Missense_Mutation p.Q109H 0.30 deleterious(0.03) benign(0.002) TCGA-37-4141-01 3 133670154 133670154 C T SLCO2A1 Nonsense_Mutation p.W253* 0.42 TCGA-37-4141-01 3 134911504 134911504 T G EPHB1 Missense_Mutation p.Y657D 0.20 deleterious(0) probably_damaging(1) TCGA-37-4141-01 3 137849900 137849900 C A A4GNT Missense_Mutation p.V67F 0.23 tolerated(0.1) benign(0.17) TCGA-37-4141-01 3 142840657 142840657 T - CHST2 Frame_Shift_Del p.R335Afs*113 0.24 TCGA-37-4141-01 3 142985611 142985611 C A SLC9A9 Missense_Mutation p.G624V 0.24 deleterious(0.03) probably_damaging(1) TCGA-37-4141-01 3 147128643 147128643 C A ZIC1 Silent p.T248T 0.29 TCGA-37-4141-01 3 148577949 148577949 A G CPB1 3'UTR 0.35 TCGA-37-4141-01 3 150644630 150644630 G T CLRN1 3'Flank 0.26 TCGA-37-4141-01 3 151463307 151463307 G C AADACL2 Missense_Mutation p.A148P 0.24 deleterious(0.02) benign(0.272) TCGA-37-4141-01 3 157034971 157034971 T G VEPH1 Silent p.V585V 0.03 TCGA-37-4141-01 3 158787189 158787189 C A IQCJ 5'UTR 0.33 TCGA-37-4141-01 3 167023679 167023679 T A ZBBX Missense_Mutation p.I493F 0.23 tolerated(0.44) benign(0.317) TCGA-37-4141-01 3 167510553 167510553 G A SERPINI1 Silent p.Q219Q 0.21 TCGA-37-4141-01 3 169492342 169492342 C A MYNN Missense_Mutation p.L87I 0.11 tolerated(0.1) possibly_damaging(0.873) TCGA-37-4141-01 3 194080379 194080379 A T LRRC15 Missense_Mutation p.I471N 0.38 deleterious(0.02) benign(0.097) TCGA-37-4141-01 3 197503814 197503814 A T FYTTD1 Missense_Mutation p.T225S 0.27 tolerated(0.2) probably_damaging(0.996) TCGA-37-4141-01 3 32933223 32933223 C T TRIM71 Missense_Mutation p.R843C 0.04 tolerated(0.08) possibly_damaging(0.88) TCGA-37-4141-01 3 33437660 33437660 G A UBP1 Missense_Mutation p.P462S 0.60 tolerated(0.89) benign(0.002) TCGA-37-4141-01 3 47742825 47742825 C A SMARCC1 Missense_Mutation p.D370Y 0.65 deleterious(0) probably_damaging(0.971) TCGA-37-4141-01 3 62464080 62464080 C T CADPS Missense_Mutation p.G1062D 0.51 deleterious(0.02) possibly_damaging(0.86) TCGA-37-4141-01 3 99514202 99514202 G A COL8A1 Missense_Mutation p.G486E 0.21 deleterious(0) unknown(0) TCGA-37-4141-01 4 122833102 122833102 G - TRPC3 Frame_Shift_Del p.K497Nfs*6 0.43 TCGA-37-4141-01 4 155242149 155242149 C A DCHS2 Missense_Mutation p.D1013Y 0.60 deleterious(0) probably_damaging(1) TCGA-37-4141-01 4 158242640 158242640 C G GRIA2 Silent p.V257V 0.57 TCGA-37-4141-01 4 188924487 188924487 C - ZFP42 Frame_Shift_Del p.I178* 0.46 TCGA-37-4141-01 4 42895576 42895576 A G GRXCR1 Missense_Mutation p.N98S 0.55 tolerated(0.12) probably_damaging(0.993) TCGA-37-4141-01 4 52861681 52861681 C A LRRC66 Missense_Mutation p.G503C 0.51 tolerated(0.08) benign(0.401) TCGA-37-4141-01 4 57842861 57842861 C A NOA1 Silent p.G297G 0.67 TCGA-37-4141-01 4 65188413 65188413 C G TECRL Missense_Mutation p.W143C 0.59 deleterious(0) probably_damaging(0.959) TCGA-37-4141-01 4 8271847 8271847 G T HTRA3 Missense_Mutation p.C51F 0.61 deleterious(0.02) probably_damaging(0.999) TCGA-37-4141-01 5 10254914 10254914 G T CCT5 Missense_Mutation p.D99Y 0.24 deleterious(0) probably_damaging(1) TCGA-37-4141-01 5 118970272 118970272 C G FAM170A Missense_Mutation p.Q277E 0.50 tolerated(0.53) benign(0.228) TCGA-37-4141-01 5 134785466 134785466 C T TIFAB Missense_Mutation p.R55H 0.11 tolerated(0.16) benign(0.07) TCGA-37-4141-01 5 135229765 135229765 G A IL9 Silent p.L87L 0.60 TCGA-37-4141-01 5 138857016 138857016 C A TMEM173 Nonsense_Mutation p.E282* 0.71 TCGA-37-4141-01 5 140502219 140502219 G C PCDHB4 Silent p.A213A 0.68 TCGA-37-4141-01 5 140554282 140554282 C T PCDHB7 Silent p.G622G 0.04 TCGA-37-4141-01 5 148930407 148930407 C A CSNK1A1 Nonsense_Mutation p.E41* 0.69 TCGA-37-4141-01 5 1879718 1879718 G T IRX4 Missense_Mutation p.N212K 0.29 deleterious(0) benign(0.228) TCGA-37-4141-01 5 19747071 19747071 A T CDH18 Missense_Mutation p.V168E 0.48 deleterious(0) probably_damaging(1) TCGA-37-4141-01 5 19747228 19747228 G T CDH18 Missense_Mutation p.L116I 0.23 deleterious(0.02) probably_damaging(0.997) TCGA-37-4141-01 5 21975332 21975332 C G CDH12 Missense_Mutation p.V132L 0.27 tolerated(0.41) benign(0.034) TCGA-37-4141-01 5 24488134 24488134 C A CDH10 Missense_Mutation p.A669S 0.23 deleterious(0) probably_damaging(0.983) TCGA-37-4141-01 5 31551433 31551433 G C C5orf22 Missense_Mutation p.E365Q 0.27 deleterious(0.03) benign(0.106) TCGA-37-4141-01 5 43628327 43628327 T A NNT Missense_Mutation p.S268T 0.29 deleterious(0) benign(0.158) TCGA-37-4141-01 5 6616870 6616870 C G NSUN2 Missense_Mutation p.V331L 0.27 deleterious(0) possibly_damaging(0.86) TCGA-37-4141-01 5 9629613 9629613 A T TAS2R1 Missense_Mutation p.S178T 0.25 tolerated(0.38) benign(0.038) TCGA-37-4141-01 6 112451081 112451081 G A LAMA4 Missense_Mutation p.T1377I 0.40 deleterious(0.03) benign(0.259) TCGA-37-4141-01 6 117586876 117586876 G A VGLL2 5'UTR 0.46 TCGA-37-4141-01 6 129609151 129609151 G T LAMA2 Missense_Mutation p.E899D 0.32 tolerated(0.16) benign(0.174) TCGA-37-4141-01 6 130374031 130374031 A C L3MBTL3 Missense_Mutation p.E159D 0.26 tolerated(0.6) benign(0.006) TCGA-37-4141-01 6 132910451 132910451 G T TAAR5 Silent p.L125L 0.37 TCGA-37-4141-01 6 139164314 139164314 C G ECT2L Missense_Mutation p.Q181E 0.05 tolerated(0.39) benign(0.031) TCGA-37-4141-01 6 144508138 144508138 C G STX11 Missense_Mutation p.A125G 0.30 deleterious(0.04) benign(0.223) TCGA-37-4141-01 6 146262959 146262959 C A SHPRH Nonsense_Mutation p.E764* 0.42 TCGA-37-4141-01 6 151672421 151672421 C T AKAP12 Silent p.V965V 0.29 TCGA-37-4141-01 6 154414553 154414553 C A OPRM1 Intron 0.27 TCGA-37-4141-01 6 158349731 158349731 G T SNX9 Missense_Mutation p.G429C 0.40 deleterious(0) probably_damaging(1) TCGA-37-4141-01 6 26368907 26368907 G T BTN3A2 Missense_Mutation p.W67L 0.28 deleterious(0) probably_damaging(1) TCGA-37-4141-01 6 28120957 28120957 A G ZKSCAN8 Missense_Mutation p.E300G 0.36 tolerated(1) benign(0) TCGA-37-4141-01 6 28472029 28472029 G T GPX6 3'UTR 0.44 TCGA-37-4141-01 6 31965514 31965514 G - C4A Frame_Shift_Del p.G1371Efs*8 0.19 TCGA-37-4141-01 6 33147525 33147525 G A COL11A2 Nonsense_Mutation p.Q387* 0.31 TCGA-37-4141-01 6 33768842 33768842 G A MLN Silent p.G33G 0.40 TCGA-37-4141-01 6 38835933 38835933 T A DNAH8 Silent p.I2046I 0.43 TCGA-37-4141-01 6 38835954 38835954 T C DNAH8 Silent p.D2053D 0.27 TCGA-37-4141-01 6 38891790 38891790 G T DNAH8 Missense_Mutation p.C3388F 0.34 possibly_damaging(0.477) TCGA-37-4141-01 6 38980082 38980082 T C DNAH8 Missense_Mutation p.I4271T 0.32 benign(0.002) TCGA-37-4141-01 6 40400370 40400370 G C LRFN2 Silent p.L161L 0.41 TCGA-37-4141-01 6 41029329 41029329 G A APOBEC2 Missense_Mutation p.A132T 0.39 tolerated(0.09) probably_damaging(0.998) TCGA-37-4141-01 6 41243833 41243833 G T TREM1 3'UTR 0.32 TCGA-37-4141-01 6 43543690 43543690 C A XPO5 5'UTR 0.37 TCGA-37-4141-01 6 49825094 49825094 A C CRISP1 Missense_Mutation p.L7W 0.25 deleterious(0) possibly_damaging(0.908) TCGA-37-4141-01 6 50718997 50718997 A G TFAP2D Missense_Mutation p.I367V 0.30 tolerated(0.19) benign(0.068) TCGA-37-4141-01 6 55925758 55925758 C - COL21A1 Frame_Shift_Del p.A763Qfs*38 0.40 TCGA-37-4141-01 6 64395266 64395267 - A PHF3 Frame_Shift_Ins p.Q551Tfs*3 0.27 TCGA-37-4141-01 6 66053931 66053931 C A EYS Missense_Mutation p.E533D 0.33 tolerated(0.44) benign(0.047) TCGA-37-4141-01 6 70866579 70866579 G T COL19A1 Silent p.R752R 0.29 TCGA-37-4141-01 6 73919536 73919536 G T RP11-257K9.8 3'UTR 0.37 TCGA-37-4141-01 6 90604959 90604959 C A GJA10 Missense_Mutation p.P258T 0.38 tolerated(0.19) benign(0.065) TCGA-37-4141-01 6 96969725 96969725 C T UFL1 5'UTR 0.39 TCGA-37-4141-01 7 100389695 100389695 C A ZAN Missense_Mutation p.A2545D 0.28 unknown(0) TCGA-37-4141-01 7 100459152 100459152 G T SLC12A9 Silent p.A494A 0.40 TCGA-37-4141-01 7 100675524 100675524 C G MUC17 Missense_Mutation p.P276R 0.28 benign(0.343) TCGA-37-4141-01 7 100679577 100679577 G T MUC17 Missense_Mutation p.S1627I 0.38 unknown(0) TCGA-37-4141-01 7 103183247 103183247 T C RELN Missense_Mutation p.N2201S 0.37 tolerated(0.12) probably_damaging(0.946) TCGA-37-4141-01 7 114302136 114302136 A G FOXP2 Missense_Mutation p.N580S 0.40 deleterious(0) probably_damaging(0.996) TCGA-37-4141-01 7 11464387 11464387 A T THSD7A Missense_Mutation p.C1107S 0.35 deleterious(0) probably_damaging(1) TCGA-37-4141-01 7 1166901 1166901 C T C7orf50 Missense_Mutation p.G41S 0.35 tolerated(0.8) benign(0) TCGA-37-4141-01 7 120428872 120428872 C A TSPAN12 Missense_Mutation p.G231V 0.42 deleterious(0) probably_damaging(0.986) TCGA-37-4141-01 7 135418840 135418840 G C FAM180A Nonsense_Mutation p.Y135* 0.35 TCGA-37-4141-01 7 138732212 138732212 G C ZC3HAV1 3'UTR 0.42 TCGA-37-4141-01 7 140453108 140453108 C A BRAF Missense_Mutation p.Q609H 0.33 deleterious(0) possibly_damaging(0.649) TCGA-37-4141-01 7 142423454 142423454 A T TRBV27 Missense_Mutation p.K37M 0.37 TCGA-37-4141-01 7 143554422 143554422 C A FAM115A Nonsense_Mutation p.E843* 0.30 TCGA-37-4141-01 7 143806781 143806781 C A OR2A2 Missense_Mutation p.L36I 0.34 tolerated(0.13) benign(0.027) TCGA-37-4141-01 7 148112556 148112556 C T CNTNAP2 Silent p.L1282L 0.38 TCGA-37-4141-01 7 149426415 149426415 G C KRBA1 Missense_Mutation p.D588H 0.26 deleterious(0) possibly_damaging(0.7) TCGA-37-4141-01 7 150069554 150069554 C T REPIN1 Silent p.C465C 0.42 TCGA-37-4141-01 7 150747277 150747277 G A ASIC3 Missense_Mutation p.G207S 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-37-4141-01 7 1529264 1529264 G A INTS1 Silent p.L740L 0.16 TCGA-37-4141-01 7 21744074 21744074 A T DNAH11 Missense_Mutation p.D2106V 0.27 probably_damaging(1) TCGA-37-4141-01 7 21824066 21824066 G T DNAH11 Missense_Mutation p.V3176L 0.32 possibly_damaging(0.499) TCGA-37-4141-01 7 26225342 26225342 T C NFE2L3 Missense_Mutation p.V675A 0.05 deleterious(0) benign(0.345) TCGA-37-4141-01 7 2691859 2691859 G T TTYH3 Missense_Mutation p.A304S 0.28 tolerated(1) benign(0.005) TCGA-37-4141-01 7 27211732 27211732 C A HOXA10 Missense_Mutation p.R340L 0.30 deleterious(0) probably_damaging(1) TCGA-37-4141-01 7 31378572 31378572 C T NEUROD6 Missense_Mutation p.R104K 0.41 deleterious(0) possibly_damaging(0.694) TCGA-37-4141-01 7 31887681 31887681 C A PDE1C Missense_Mutation p.R354I 0.32 deleterious(0) probably_damaging(0.931) TCGA-37-4141-01 7 48311842 48311842 C T ABCA13 Missense_Mutation p.S860F 0.41 probably_damaging(0.999) TCGA-37-4141-01 7 63726846 63726846 C G ZNF679 Missense_Mutation p.R279G 0.32 tolerated(0.18) benign(0.146) TCGA-37-4141-01 7 64661044 64661044 C T INTS4L1 RNA 0.12 TCGA-37-4141-01 7 72193899 72193899 C A TYW1B Intron 0.40 TCGA-37-4141-01 7 96650125 96650125 T C DLX5 Missense_Mutation p.S265G 0.30 tolerated(0.16) benign(0.003) TCGA-37-4141-01 8 116616283 116616303 TCAGGGGTGGTGAATGAACAC - TRPS1 In_Frame_Del p.Q631_D638delinsH 0.64 TCGA-37-4141-01 8 143846491 143846491 G C LYNX1 Missense_Mutation p.C74W 0.14 deleterious(0) probably_damaging(0.997) TCGA-37-4141-01 8 145151504 145151504 A T CYC1 Missense_Mutation p.Y210F 0.23 deleterious(0) probably_damaging(0.999) TCGA-37-4141-01 8 37914609 37914609 C T EIF4EBP1 Silent p.I52I 0.51 TCGA-37-4141-01 8 56436018 56436018 G A XKR4 Silent p.S395S 0.21 TCGA-37-4141-01 8 72942187 72942187 G A TRPA1 Silent p.G962G 0.19 TCGA-37-4141-01 8 7320355 7320355 G T SPAG11B Missense_Mutation p.H30N 0.17 deleterious(0.01) benign(0.123) TCGA-37-4141-01 8 97172832 97172832 G A GDF6 Missense_Mutation p.S30F 0.48 deleterious(0.01) possibly_damaging(0.691) TCGA-37-4141-01 8 97172833 97172833 A T GDF6 Missense_Mutation p.S30T 0.48 tolerated(0.15) benign(0.188) TCGA-37-4141-01 9 114246757 114246757 A C KIAA0368 Silent p.R52R 0.47 TCGA-37-4141-01 9 123675781 123675781 G A TRAF1 Missense_Mutation p.A177V 0.66 tolerated(0.4) benign(0.008) TCGA-37-4141-01 9 126439038 126439038 C A DENND1A Missense_Mutation p.K111N 0.48 deleterious(0) probably_damaging(1) TCGA-37-4141-01 9 139369734 139369734 C G SEC16A Silent p.P778P 0.41 TCGA-37-4141-01 9 139693672 139693672 G A CCDC183 Silent p.K63K 0.44 TCGA-37-4141-01 9 139835710 139835710 C A FBXW5 Missense_Mutation p.V484L 0.61 deleterious(0) possibly_damaging(0.9) TCGA-37-4141-01 9 32541488 32541488 G A TOPORS Missense_Mutation p.P1012L 0.29 tolerated_low_confidence(0.24) unknown(0) TCGA-37-4141-01 9 33385414 33385414 C A AQP7 Intron 0.14 TCGA-37-4141-01 9 5300201 5300201 C A RLN2 Missense_Mutation p.G152V 0.61 tolerated(0.15) benign(0.095) TCGA-37-4141-01 9 79321366 79321366 C T PRUNE2 Missense_Mutation p.V1942M 0.59 tolerated(0.19) benign(0.005) TCGA-37-4141-01 9 84531786 84531786 C A SPATA31D5P RNA 0.64 TCGA-37-4141-01 X 101623486 101623486 T A NXF2B Missense_Mutation p.Q230H 0.24 tolerated(0.06) benign(0.025) TCGA-37-4141-01 X 134989135 134989135 C A SAGE1 Missense_Mutation p.P263T 0.59 tolerated(0.09) benign(0.09) TCGA-37-4141-01 X 138882219 138882219 C G ATP11C Missense_Mutation p.R240T 0.62 tolerated(0.09) probably_damaging(0.98) TCGA-37-4141-01 X 142795397 142795397 C A SPANXN2 Missense_Mutation p.G94V 0.55 tolerated(0.19) unknown(0) TCGA-37-4141-01 X 153940970 153940970 G A GAB3 Silent p.P201P 0.26 TCGA-37-4141-01 X 15781006 15781006 G T CA5B Intron 0.67 TCGA-37-4141-01 X 21675117 21675117 G A KLHL34 Missense_Mutation p.R264C 0.59 deleterious(0.01) possibly_damaging(0.586) TCGA-37-4141-01 X 30260892 30260892 T A MAGEB4 Missense_Mutation p.C214S 0.63 tolerated(0.53) benign(0.088) TCGA-37-4141-01 X 34657478 34657478 G A TMEM47 Missense_Mutation p.L85F 0.54 tolerated(0.16) probably_damaging(0.996) TCGA-37-4141-01 X 69647202 69647202 C A GDPD2 Silent p.L275L 0.66 TCGA-37-4141-01 X 76937345 76937345 T A ATRX Missense_Mutation p.R1135W 0.67 possibly_damaging(0.749) TCGA-37-4141-01 X 79999572 79999572 C A BRWD3 Missense_Mutation p.A258S 0.51 tolerated(0.06) benign(0.34) TCGA-37-4141-01 X 91134266 91134266 C G PCDH11X Silent p.T1009T 0.51 TCGA-37-5819-01 10 106974319 106974319 G T SORCS3 Missense_Mutation p.R832L 0.65 tolerated(0.18) benign(0.023) TCGA-37-5819-01 10 116735154 116735154 A G TRUB1 3'UTR 0.68 TCGA-37-5819-01 10 12046643 12046643 C A UPF2 Missense_Mutation p.A464S 0.87 tolerated(0.17) benign(0.082) TCGA-37-5819-01 10 120801850 120801850 C A EIF3A Missense_Mutation p.R1061L 0.69 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-37-5819-01 10 129537212 129537212 G T FOXI2 Nonsense_Mutation p.E314* 0.45 TCGA-37-5819-01 10 135112951 135112951 T A TUBGCP2 Missense_Mutation p.T146S 0.81 tolerated(0.5) benign(0.02) TCGA-37-5819-01 10 135179530 135179530 G A ECHS1 Missense_Mutation p.A230V 0.16 deleterious(0) probably_damaging(0.966) TCGA-37-5819-01 10 1421274 1421274 G T ADARB2 Missense_Mutation p.T61N 0.80 tolerated(1) benign(0.001) TCGA-37-5819-01 10 22002759 22002759 A G MLLT10 Silent p.G586G 0.60 TCGA-37-5819-01 10 26789940 26789940 C A APBB1IP Missense_Mutation p.A118D 0.77 tolerated(0.11) benign(0.295) TCGA-37-5819-01 10 26789941 26789941 C A APBB1IP Silent p.A118A 0.77 TCGA-37-5819-01 10 27687190 27687190 G T PTCHD3 3'UTR 0.75 TCGA-37-5819-01 10 27687191 27687191 G C PTCHD3 3'UTR 0.76 TCGA-37-5819-01 10 30658331 30658331 C A AL161651.1 5'Flank 0.68 TCGA-37-5819-01 10 38344973 38344973 G T ZNF33A Nonsense_Mutation p.E641* 0.59 TCGA-37-5819-01 10 48370984 48370984 G T ZNF488 Missense_Mutation p.W151L 0.26 deleterious(0.04) benign(0.004) TCGA-37-5819-01 10 50944083 50944083 G T OGDHL Silent p.R965R 0.36 TCGA-37-5819-01 10 51093285 51093285 C T PARG Silent p.V113V 0.57 TCGA-37-5819-01 10 68040354 68040354 C A CTNNA3 Silent p.V586V 0.26 TCGA-37-5819-01 10 69571261 69571261 C T DNAJC12 Intron 0.36 TCGA-37-5819-01 10 69881370 69881370 G T MYPN Missense_Mutation p.D59Y 0.42 deleterious(0) possibly_damaging(0.629) TCGA-37-5819-01 10 70426853 70426853 C T TET1 Missense_Mutation p.R1505C 0.12 deleterious(0) probably_damaging(0.998) TCGA-37-5819-01 10 91353613 91353613 C T PANK1 Missense_Mutation p.D482N 0.13 tolerated(0.05) probably_damaging(0.997) TCGA-37-5819-01 10 91497668 91497668 A G KIF20B Missense_Mutation p.T984A 0.34 tolerated(0.51) benign(0.144) TCGA-37-5819-01 10 93244288 93244288 A G HECTD2 Silent p.Q282Q 0.73 TCGA-37-5819-01 10 95126238 95126238 G A MYOF Silent p.V888V 0.33 TCGA-37-5819-01 10 95126239 95126239 A C MYOF Missense_Mutation p.V888G 0.31 deleterious(0) probably_damaging(0.999) TCGA-37-5819-01 11 107501187 107501187 G T ELMOD1 Missense_Mutation p.W21L 0.75 tolerated(0.22) probably_damaging(0.997) TCGA-37-5819-01 11 119025544 119025544 C A ABCG4 Missense_Mutation p.S202Y 0.88 deleterious(0) probably_damaging(0.996) TCGA-37-5819-01 11 119059486 119059486 C A PDZD3 Silent p.S399S 0.84 TCGA-37-5819-01 11 124744123 124744123 C A ROBO3 Missense_Mutation p.R648S 0.83 deleterious(0) benign(0.097) TCGA-37-5819-01 11 134237152 134237152 G C GLB1L2 Missense_Mutation p.G269A 0.86 tolerated(0.48) benign(0.014) TCGA-37-5819-01 11 13729621 13729621 T C FAR1 Silent p.S180S 0.67 TCGA-37-5819-01 11 1955670 1955670 G C TNNT3 Missense_Mutation p.A159P 0.82 tolerated(0.24) probably_damaging(0.972) TCGA-37-5819-01 11 19970369 19970369 C T NAV2 Silent p.D819D 0.11 TCGA-37-5819-01 11 22391595 22391595 C A SLC17A6 Missense_Mutation p.T301N 0.66 deleterious(0) possibly_damaging(0.675) TCGA-37-5819-01 11 22399182 22399182 C T SLC17A6 Nonsense_Mutation p.Q549* 0.84 TCGA-37-5819-01 11 30253514 30253514 A T FSHB Missense_Mutation p.E22V 0.79 tolerated(0.08) benign(0.005) TCGA-37-5819-01 11 32949508 32949508 G T QSER1 Intron 0.74 TCGA-37-5819-01 11 33620386 33620386 G T KIAA1549L Missense_Mutation p.G1294V 0.65 deleterious(0) probably_damaging(1) TCGA-37-5819-01 11 33886199 33886199 C A LMO2 Missense_Mutation p.R138L 0.80 tolerated(0.11) benign(0.157) TCGA-37-5819-01 11 4388922 4388922 A T OR52B4 Missense_Mutation p.F202I 0.77 tolerated(0.15) benign(0.03) TCGA-37-5819-01 11 45274009 45274009 C T SYT13 Missense_Mutation p.G270E 0.75 deleterious(0.02) probably_damaging(0.912) TCGA-37-5819-01 11 46105804 46105804 T C PHF21A 5'UTR 0.81 TCGA-37-5819-01 11 47602338 47602338 T G NDUFS3 Intron 0.74 TCGA-37-5819-01 11 49598281 49598281 C T RP11-707M1.1 RNA 0.78 TCGA-37-5819-01 11 5153566 5153566 T A OR52A5 Missense_Mutation p.M103L 0.77 tolerated(0.23) benign(0.05) TCGA-37-5819-01 11 5364332 5364332 C A OR51B5 Missense_Mutation p.K141N 0.71 tolerated(0.05) benign(0.16) TCGA-37-5819-01 11 55594910 55594910 C A OR5L2 Nonsense_Mutation p.C72* 0.79 TCGA-37-5819-01 11 55890494 55890494 G T OR8H3 Missense_Mutation p.A216S 0.75 tolerated(0.24) benign(0.014) TCGA-37-5819-01 11 56043882 56043882 C T OR5T1 Silent p.H256H 0.77 TCGA-37-5819-01 11 56086400 56086400 T A OR8K3 Missense_Mutation p.D206E 0.08 deleterious_low_confidence(0.01) benign(0.093) TCGA-37-5819-01 11 5809645 5809645 A T OR52N1 Nonsense_Mutation p.Y134* 0.81 TCGA-37-5819-01 11 58980283 58980283 G C MPEG1 Nonsense_Mutation p.S19* 0.76 TCGA-37-5819-01 11 59611377 59611377 G T GIF Nonsense_Mutation p.Y77* 0.70 TCGA-37-5819-01 11 6023520 6023520 C T OR56A4 Missense_Mutation p.G287S 0.88 tolerated(0.21) benign(0.267) TCGA-37-5819-01 11 6048746 6048746 G T OR56A1 Missense_Mutation p.H63Q 0.79 tolerated(0.06) benign(0.226) TCGA-37-5819-01 11 63059062 63059062 A T SLC22A10 Silent p.L151L 0.10 TCGA-37-5819-01 11 63449137 63449137 C T RTN3 Missense_Mutation p.S10F 0.81 tolerated_low_confidence(0.12) unknown(0) TCGA-37-5819-01 11 64681895 64681895 G A ATG2A Silent p.A83A 0.50 TCGA-37-5819-01 11 6651120 6651120 C A DCHS1 Silent p.P1606P 0.77 TCGA-37-5819-01 11 6661977 6661977 C A DCHS1 Missense_Mutation p.V290L 0.20 tolerated(0.19) benign(0.443) TCGA-37-5819-01 11 67410278 67410278 C T ACY3 Missense_Mutation p.V293I 0.85 tolerated(0.55) benign(0.002) TCGA-37-5819-01 11 71850028 71850028 G A FOLR3 Missense_Mutation p.M106I 0.80 tolerated(0.48) benign(0.001) TCGA-37-5819-01 11 75282989 75282989 G C SERPINH1 Missense_Mutation p.R373P 0.90 tolerated(0.28) possibly_damaging(0.645) TCGA-37-5819-01 11 7847153 7847153 A G OR5P3 Missense_Mutation p.Y123H 0.81 deleterious(0) probably_damaging(0.986) TCGA-37-5819-01 11 89073306 89073306 T C NOX4 Silent p.L457L 0.81 TCGA-37-5819-01 11 93837756 93837756 G A HEPHL1 Silent p.K915K 0.70 TCGA-37-5819-01 11 94924617 94924617 C A SESN3 Missense_Mutation p.R98L 0.20 deleterious(0.02) probably_damaging(0.935) TCGA-37-5819-01 11 95825687 95825687 C - MAML2 Frame_Shift_Del p.G503Afs*7 0.50 TCGA-37-5819-01 11 99944961 99944961 C T CNTN5 Silent p.P505P 0.81 TCGA-37-5819-01 12 100451504 100451504 C A UHRF1BP1L Missense_Mutation p.C1090F 0.22 tolerated(0.1) benign(0.05) TCGA-37-5819-01 12 101552093 101552093 C A SLC5A8 Missense_Mutation p.Q548H 0.25 deleterious(0.03) probably_damaging(0.957) TCGA-37-5819-01 12 101876641 101876641 G T SPIC Silent p.L94L 0.19 TCGA-37-5819-01 12 102591330 102591330 G T PMCH Missense_Mutation p.F73L 0.20 tolerated(0.41) probably_damaging(0.97) TCGA-37-5819-01 12 103700042 103700042 A T C12orf42 Missense_Mutation p.V114E 0.26 deleterious(0) possibly_damaging(0.696) TCGA-37-5819-01 12 104376979 104376979 C A TDG Missense_Mutation p.A227E 0.23 deleterious(0) probably_damaging(0.996) TCGA-37-5819-01 12 10560282 10560282 C A KLRC4 Silent p.V149V 0.28 TCGA-37-5819-01 12 10961936 10961936 C A TAS2R9 Missense_Mutation p.V247F 0.26 tolerated(0.07) benign(0.031) TCGA-37-5819-01 12 109696829 109696829 G T ACACB Missense_Mutation p.A2138S 0.45 deleterious(0.04) possibly_damaging(0.625) TCGA-37-5819-01 12 109835560 109835560 C A MYO1H Silent p.L155L 0.36 TCGA-37-5819-01 12 113314509 113314509 G A RPH3A Missense_Mutation p.G337R 0.22 tolerated(0.22) possibly_damaging(0.79) TCGA-37-5819-01 12 113830701 113830701 G T SDS 3'UTR 0.51 TCGA-37-5819-01 12 114803917 114803917 G T TBX5 Intron 0.26 TCGA-37-5819-01 12 114803918 114803918 G T TBX5 Intron 0.26 TCGA-37-5819-01 12 114836486 114836486 G T TBX5 Silent p.R134R 0.29 TCGA-37-5819-01 12 117726024 117726024 C T NOS1 Missense_Mutation p.E328K 0.27 tolerated(0.89) benign(0.004) TCGA-37-5819-01 12 122079195 122079195 G A ORAI1 Silent p.T186T 0.14 TCGA-37-5819-01 12 122862333 122862333 C A CLIP1 Missense_Mutation p.W87L 0.54 deleterious(0) probably_damaging(0.995) TCGA-37-5819-01 12 123687432 123687432 G A MPHOSPH9 Missense_Mutation p.P355L 0.48 deleterious(0.01) possibly_damaging(0.901) TCGA-37-5819-01 12 123687514 123687514 G A MPHOSPH9 Silent p.L328L 0.32 TCGA-37-5819-01 12 130648664 130648664 G T FZD10 Missense_Mutation p.A393S 0.53 tolerated(0.1) probably_damaging(0.999) TCGA-37-5819-01 12 130892301 130892301 G T RIMBP2 Silent p.P965P 0.48 TCGA-37-5819-01 12 133360716 133360716 C T GOLGA3 Intron 0.55 TCGA-37-5819-01 12 18716391 18716391 C A PIK3C2G Missense_Mutation p.H1246Q 0.78 deleterious(0) probably_damaging(1) TCGA-37-5819-01 12 20769273 20769273 G T PDE3A Missense_Mutation p.R460I 0.77 tolerated(0.06) possibly_damaging(0.855) TCGA-37-5819-01 12 26383792 26383792 T A SSPN Missense_Mutation p.L172H 0.80 deleterious(0) probably_damaging(0.983) TCGA-37-5819-01 12 26809298 26809298 C A ITPR2 Missense_Mutation p.Q792H 0.76 deleterious(0) probably_damaging(0.999) TCGA-37-5819-01 12 2757671 2757671 A T CACNA1C Missense_Mutation p.M1363L 0.86 tolerated(0.68) benign(0.001) TCGA-37-5819-01 12 38714685 38714685 A G ALG10B Silent p.Q364Q 0.57 TCGA-37-5819-01 12 42864063 42864063 T G PRICKLE1 Silent p.P77P 0.19 TCGA-37-5819-01 12 48185723 48185723 C G HDAC7 Silent p.P581P 0.50 TCGA-37-5819-01 12 48866596 48866596 T C ANP32D Missense_Mutation p.I50T 0.08 deleterious(0.01) benign(0.066) TCGA-37-5819-01 12 49364267 49364267 C T WNT10B Missense_Mutation p.G16S 0.80 tolerated_low_confidence(0.59) benign(0.001) TCGA-37-5819-01 12 49723186 49723186 G T TROAP Missense_Mutation p.W371C 0.23 tolerated(0.18) benign(0.022) TCGA-37-5819-01 12 52200923 52200923 C A SCN8A Missense_Mutation p.P1885T 0.18 deleterious(0) probably_damaging(0.999) TCGA-37-5819-01 12 52201149 52201149 G C SCN8A Missense_Mutation p.R1960P 0.31 tolerated_low_confidence(0.09) possibly_damaging(0.809) TCGA-37-5819-01 12 52774941 52774941 T A KRT84 Missense_Mutation p.N376Y 0.64 deleterious(0) benign(0.255) TCGA-37-5819-01 12 52818127 52818127 G T KRT75 3'UTR 0.12 TCGA-37-5819-01 12 53004594 53004594 G T KRT73 Missense_Mutation p.A379D 0.71 deleterious(0) possibly_damaging(0.907) TCGA-37-5819-01 12 53671296 53671296 G T ESPL1 Nonsense_Mutation p.E710* 0.12 TCGA-37-5819-01 12 54059154 54059154 C G ATP5G2 Missense_Mutation p.E181Q 0.12 deleterious(0) probably_damaging(0.963) TCGA-37-5819-01 12 57843589 57843589 A G INHBC Silent p.P281P 0.19 TCGA-37-5819-01 12 57868736 57868736 A T ARHGAP9 Missense_Mutation p.L525M 0.59 deleterious(0) probably_damaging(1) TCGA-37-5819-01 12 58013892 58013892 C A SLC26A10 5'UTR 0.22 TCGA-37-5819-01 12 6483596 6483596 G A SCNN1A Silent p.I177I 0.30 TCGA-37-5819-01 12 66700232 66700232 G T HELB Nonsense_Mutation p.E239* 0.24 TCGA-37-5819-01 12 6927603 6927603 C T CD4 Silent p.S391S 0.21 TCGA-37-5819-01 12 6933862 6933862 C A GPR162 Silent p.S266S 0.56 TCGA-37-5819-01 12 75672579 75672579 G A CAPS2 Intron 0.26 TCGA-37-5819-01 12 78583938 78583938 C T NAV3 Missense_Mutation p.S2055F 0.16 deleterious(0) benign(0.361) TCGA-37-5819-01 12 78593258 78593258 G T NAV3 Missense_Mutation p.W2199L 0.53 deleterious(0) probably_damaging(0.999) TCGA-37-5819-01 12 81111114 81111114 G A MYF5 Missense_Mutation p.R91H 0.21 deleterious(0) probably_damaging(1) TCGA-37-5819-01 12 85694949 85694949 G T ALX1 Missense_Mutation p.W226L 0.53 deleterious(0) benign(0.051) TCGA-37-5819-01 12 86268083 86268083 C A NTS 5'UTR 0.60 TCGA-37-5819-01 12 86272298 86272298 T C NTS Missense_Mutation p.I104T 0.29 deleterious(0.05) possibly_damaging(0.451) TCGA-37-5819-01 12 88554483 88554483 G T TMTC3 Missense_Mutation p.A218S 0.22 tolerated(0.65) benign(0.088) TCGA-37-5819-01 12 9242509 9242509 G A A2M Silent p.L903L 0.55 TCGA-37-5819-01 12 92821902 92821902 G T CLLU1OS Missense_Mutation p.N7K 0.16 tolerated_low_confidence(0.79) possibly_damaging(0.742) TCGA-37-5819-01 12 9346700 9346700 A T PZP Missense_Mutation p.S409R 0.44 deleterious(0.04) benign(0.004) TCGA-37-5819-01 12 99640543 99640543 G T ANKS1B Missense_Mutation p.P619H 0.14 tolerated(0.07) possibly_damaging(0.805) TCGA-37-5819-01 12 9997161 9997161 C A KLRF1 3'UTR 0.41 TCGA-37-5819-01 12 9997163 9997163 C T KLRF1 3'UTR 0.37 TCGA-37-5819-01 13 102366859 102366859 G A ITGBL1 Missense_Mutation p.D451N 0.67 deleterious(0) probably_damaging(0.998) TCGA-37-5819-01 13 103288052 103288052 G T TPP2 Missense_Mutation p.Q503H 0.62 deleterious(0.01) probably_damaging(0.995) TCGA-37-5819-01 13 111932896 111932896 G T ARHGEF7 Nonsense_Mutation p.E554* 0.38 TCGA-37-5819-01 13 114325953 114325953 G T GRK1 Missense_Mutation p.V323L 0.33 deleterious(0.03) possibly_damaging(0.748) TCGA-37-5819-01 13 20024413 20024413 G T TPTE2 Missense_Mutation p.P292T 0.52 deleterious(0) probably_damaging(0.999) TCGA-37-5819-01 13 25448297 25448297 C A RNF17 Missense_Mutation p.A1498E 0.49 deleterious(0.04) probably_damaging(0.996) TCGA-37-5819-01 13 33704176 33704176 C A STARD13 Missense_Mutation p.G213V 0.61 tolerated(0.14) benign(0.019) TCGA-37-5819-01 13 39597192 39597192 G A PROSER1 Missense_Mutation p.P214S 0.70 deleterious(0) probably_damaging(0.999) TCGA-37-5819-01 13 46946479 46946479 G C KIAA0226L Missense_Mutation p.I44M 0.79 deleterious(0.04) benign(0.377) TCGA-37-5819-01 13 50123776 50123776 T A RCBTB1 Missense_Mutation p.E288V 0.68 deleterious(0.01) possibly_damaging(0.9) TCGA-37-5819-01 13 70370953 70370953 G T KLHL1 Missense_Mutation p.T519K 0.69 deleterious(0.01) probably_damaging(0.999) TCGA-37-5819-01 13 73428239 73428239 G A PIBF1 Missense_Mutation p.R423Q 0.36 deleterious(0.01) probably_damaging(0.99) TCGA-37-5819-01 13 98896797 98896797 G T FARP1 Intron 0.67 TCGA-37-5819-01 14 102505346 102505346 C T DYNC1H1 Nonsense_Mutation p.Q3739* 0.15 TCGA-37-5819-01 14 104145867 104145867 C A KLC1 Missense_Mutation p.S545R 0.20 tolerated_low_confidence(0.13) possibly_damaging(0.506) TCGA-37-5819-01 14 105642975 105642975 C A NUDT14 Silent p.V108V 0.32 TCGA-37-5819-01 14 106320447 106320447 G T IGHM 3'UTR 0.41 TCGA-37-5819-01 14 106573402 106573402 C A IGHV3-11 Missense_Mutation p.G61V 0.42 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-37-5819-01 14 106610475 106610475 C T IGHV3-15 Silent p.E65E 0.49 TCGA-37-5819-01 14 20916116 20916116 C T OSGEP Missense_Mutation p.R247Q 0.24 deleterious(0) probably_damaging(0.984) TCGA-37-5819-01 14 21424307 21424307 C A RNASE2 Missense_Mutation p.A126E 0.75 tolerated(0.28) benign(0.257) TCGA-37-5819-01 14 24624472 24624472 C T RNF31 Missense_Mutation p.A746V 0.59 tolerated(0.89) benign(0.222) TCGA-37-5819-01 14 33292105 33292105 G T AKAP6 Nonsense_Mutation p.E1696* 0.28 TCGA-37-5819-01 14 36039857 36039857 C T RALGAPA1 Missense_Mutation p.A1982T 0.25 deleterious(0) probably_damaging(0.998) TCGA-37-5819-01 14 37969326 37969326 C A MIPOL1 Silent p.A415A 0.40 TCGA-37-5819-01 14 38723962 38723962 C - CLEC14A Frame_Shift_Del p.K422Nfs*43 0.36 TCGA-37-5819-01 14 47351344 47351344 C A MDGA2 Missense_Mutation p.L773F 0.41 deleterious(0) probably_damaging(0.999) TCGA-37-5819-01 14 47426788 47426788 G T MDGA2 Silent p.V626V 0.29 TCGA-37-5819-01 14 50597419 50597419 C T SOS2 Missense_Mutation p.G1046D 0.41 tolerated(0.47) benign(0.08) TCGA-37-5819-01 14 51398395 51398395 C A PYGL Missense_Mutation p.W175L 0.26 tolerated(0.07) benign(0.371) TCGA-37-5819-01 14 56763638 56763638 G T PELI2 Missense_Mutation p.R339S 0.46 tolerated(0.09) probably_damaging(0.942) TCGA-37-5819-01 14 59112968 59112968 G T DACT1 Nonsense_Mutation p.E543* 0.50 TCGA-37-5819-01 14 59113532 59113532 G T DACT1 Nonsense_Mutation p.E731* 0.35 TCGA-37-5819-01 14 75134184 75134184 C A AREL1 Silent p.V676V 0.65 TCGA-37-5819-01 14 75181615 75181615 A G FCF1 Missense_Mutation p.K38E 0.40 tolerated(0.55) benign(0.002) TCGA-37-5819-01 14 75265978 75265978 G T YLPM1 Silent p.R1326R 0.34 TCGA-37-5819-01 14 75284933 75284933 G A YLPM1 Splice_Site p.X1983_splice 0.65 TCGA-37-5819-01 14 77791264 77791264 G T GSTZ1 Missense_Mutation p.A23S 0.50 deleterious(0.02) benign(0.439) TCGA-37-5819-01 14 79270147 79270147 C - NRXN3 Frame_Shift_Del p.K371Sfs*6 0.44 TCGA-37-5819-01 14 81227834 81227834 C - CEP128 Frame_Shift_Del p.E834Kfs*17 0.31 TCGA-37-5819-01 14 81251450 81251450 T A CEP128 Missense_Mutation p.D667V 0.36 deleterious(0) possibly_damaging(0.474) TCGA-37-5819-01 14 92470935 92470935 T C TRIP11 Missense_Mutation p.K1129E 0.45 deleterious(0.01) possibly_damaging(0.447) TCGA-37-5819-01 14 93483148 93483148 T A ITPK1 Splice_Site p.X41_splice 0.23 TCGA-37-5819-01 14 94245617 94245617 G T PRIMA1 Missense_Mutation p.T45N 0.58 deleterious(0.04) benign(0.265) TCGA-37-5819-01 14 94780383 94780383 G T SERPINA6 Silent p.I201I 0.41 TCGA-37-5819-01 14 94962827 94962827 G T SERPINA12 Missense_Mutation p.P263H 0.43 deleterious(0) probably_damaging(0.999) TCGA-37-5819-01 14 96730602 96730602 C A BDKRB1 Missense_Mutation p.H195N 0.32 tolerated(1) benign(0.345) TCGA-37-5819-01 15 20169932 20169932 A C IGHV1OR15-9 Missense_Mutation p.Y114D 0.23 deleterious(0) probably_damaging(0.999) TCGA-37-5819-01 15 20193216 20193216 G C IGHV3OR15-7 Missense_Mutation p.Q18E 0.10 deleterious_low_confidence(0) benign(0.17) TCGA-37-5819-01 15 20663141 20663142 - T HERC2P3 RNA 0.23 TCGA-37-5819-01 15 25467558 25467558 A T SNORD115-28 RNA 0.55 TCGA-37-5819-01 15 28491925 28491925 G A HERC2 Silent p.F1118F 0.70 TCGA-37-5819-01 15 33925290 33925290 G T RYR3 Missense_Mutation p.W1003L 0.62 probably_damaging(1) TCGA-37-5819-01 15 33999221 33999221 C A RYR3 Nonsense_Mutation p.Y2195* 0.73 TCGA-37-5819-01 15 40099429 40099429 C A GPR176 Missense_Mutation p.R68L 0.75 tolerated(0.13) benign(0.023) TCGA-37-5819-01 15 40099430 40099430 G A GPR176 Missense_Mutation p.R68C 0.76 tolerated(0.22) benign(0.013) TCGA-37-5819-01 15 45365802 45365802 G A SORD 3'UTR 0.17 TCGA-37-5819-01 15 48714206 48714206 C A FBN1 Missense_Mutation p.G2505C 0.65 probably_damaging(1) TCGA-37-5819-01 15 53998163 53998163 G T WDR72 Missense_Mutation p.P355T 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-37-5819-01 15 56387339 56387339 C A RFX7 Nonsense_Mutation p.E863* 0.23 TCGA-37-5819-01 15 65490241 65490241 G T CILP Missense_Mutation p.R795S 0.78 deleterious(0) probably_damaging(0.994) TCGA-37-5819-01 15 65766574 65766574 C A DPP8 Missense_Mutation p.W519C 0.68 deleterious(0) probably_damaging(0.999) TCGA-37-5819-01 15 65766575 65766575 C A DPP8 Missense_Mutation p.W519L 0.68 deleterious(0) probably_damaging(0.998) TCGA-37-5819-01 15 72146721 72146721 T A MYO9A Missense_Mutation p.T2115S 0.72 tolerated(0.05) benign(0.403) TCGA-37-5819-01 15 72252431 72252431 G A MYO9A Missense_Mutation p.R665W 0.39 deleterious(0) probably_damaging(0.997) TCGA-37-5819-01 15 74476241 74476241 C A STRA6 Missense_Mutation p.C458F 0.70 deleterious(0) possibly_damaging(0.861) TCGA-37-5819-01 15 75122513 75122513 G T CPLX3 Missense_Mutation p.V99L 0.64 deleterious(0.04) benign(0.121) TCGA-37-5819-01 15 84245363 84245363 G T SH3GL3 Missense_Mutation p.R165L 0.57 deleterious(0) probably_damaging(0.998) TCGA-37-5819-01 15 89421336 89421336 C T HAPLN3 Silent p.L316L 0.32 TCGA-37-5819-01 16 15155611 15155611 C A RRN3 Missense_Mutation p.S649I 0.36 tolerated_low_confidence(0.14) possibly_damaging(0.766) TCGA-37-5819-01 16 15876249 15876249 G T MYH11 Nonsense_Mutation p.S247* 0.41 TCGA-37-5819-01 16 18887445 18887445 C A SMG1 Splice_Site p.X630_splice 0.37 TCGA-37-5819-01 16 1994753 1994753 C A RPL3L 3'UTR 0.77 TCGA-37-5819-01 16 1994754 1994754 T A RPL3L 3'UTR 0.75 TCGA-37-5819-01 16 20371903 20371903 T C PDILT Missense_Mutation p.E498G 0.43 deleterious(0) possibly_damaging(0.906) TCGA-37-5819-01 16 20638573 20638573 C T ACSM1 Silent p.K455K 0.38 TCGA-37-5819-01 16 21145703 21145703 T C DNAH3 Missense_Mutation p.Q320R 0.33 tolerated(0.6) benign(0.001) TCGA-37-5819-01 16 21854824 21854824 A G NPIPB4 Missense_Mutation p.I143T 0.14 possibly_damaging(0.864) TCGA-37-5819-01 16 24950823 24950823 G A ARHGAP17 Missense_Mutation p.P529L 0.29 deleterious(0.02) probably_damaging(0.946) TCGA-37-5819-01 16 27246603 27246603 T A NSMCE1 Nonsense_Mutation p.K52* 0.64 TCGA-37-5819-01 16 27441400 27441400 G T IL21R Missense_Mutation p.R3L 0.17 tolerated_low_confidence(0.09) benign(0.28) TCGA-37-5819-01 16 27480717 27480717 C T GTF3C1 Missense_Mutation p.V1657I 0.15 tolerated(0.23) benign(0.016) TCGA-37-5819-01 16 27503961 27503961 C A GTF3C1 Nonsense_Mutation p.E984* 0.49 TCGA-37-5819-01 16 28592408 28592408 C G CCDC101 Silent p.A6A 0.11 TCGA-37-5819-01 16 2949164 2949164 C A FLYWCH2 3'UTR 0.27 TCGA-37-5819-01 16 29990517 29990517 G T TAOK2 Missense_Mutation p.D151Y 0.24 deleterious(0) probably_damaging(0.963) TCGA-37-5819-01 16 30036988 30036988 G A FAM57B Intron 0.46 TCGA-37-5819-01 16 31131698 31131698 C T KAT8 Silent p.L109L 0.32 TCGA-37-5819-01 16 31434716 31434716 T G ITGAD Missense_Mutation p.F968C 0.43 deleterious(0) probably_damaging(0.998) TCGA-37-5819-01 16 424044 424044 G A TMEM8A Silent p.T621T 0.72 TCGA-37-5819-01 16 51174429 51174429 G C SALL1 Silent p.P568P 0.27 TCGA-37-5819-01 16 55733543 55733543 T C SLC6A2 Missense_Mutation p.F523L 0.23 tolerated(0.16) benign(0.168) TCGA-37-5819-01 16 56485218 56485218 G C NUDT21 5'UTR 0.40 TCGA-37-5819-01 16 56485432 56485432 G A OGFOD1 5'UTR 0.08 TCGA-37-5819-01 16 56670809 56670809 G C MT1M 3'Flank 0.49 TCGA-37-5819-01 16 56904619 56904619 T C SLC12A3 Missense_Mutation p.S275P 0.24 deleterious(0.01) probably_damaging(0.975) TCGA-37-5819-01 16 57284369 57284369 A T ARL2BP Missense_Mutation p.T114S 0.21 tolerated(0.09) benign(0.266) TCGA-37-5819-01 16 66424464 66424464 C A CDH5 Missense_Mutation p.H314N 0.32 tolerated(0.17) benign(0.266) TCGA-37-5819-01 16 68338008 68338008 A C SLC7A6OS Missense_Mutation p.I200S 0.49 deleterious(0) probably_damaging(0.96) TCGA-37-5819-01 16 70891612 70891612 G T HYDIN Silent p.L4097L 0.17 TCGA-37-5819-01 16 71098610 71098610 G A HYDIN Nonsense_Mutation p.Q737* 0.21 TCGA-37-5819-01 16 72984563 72984563 C T ZFHX3 Silent p.K1007K 0.21 TCGA-37-5819-01 16 75513561 75513561 C A CHST6 Missense_Mutation p.V56L 0.25 tolerated(0.36) benign(0.075) TCGA-37-5819-01 16 83998779 83998779 G A OSGIN1 Missense_Mutation p.V201M 0.30 deleterious(0.02) probably_damaging(0.972) TCGA-37-5819-01 16 85111073 85111073 C T KIAA0513 Missense_Mutation p.A206V 0.17 tolerated(0.36) benign(0.002) TCGA-37-5819-01 16 87717830 87717830 A T JPH3 Missense_Mutation p.T415S 0.38 tolerated(0.07) benign(0.006) TCGA-37-5819-01 16 87717831 87717831 C T JPH3 Missense_Mutation p.T415I 0.41 tolerated(0.45) benign(0.003) TCGA-37-5819-01 16 9923493 9923493 A C GRIN2A Silent p.S598S 0.43 TCGA-37-5819-01 17 10318833 10318833 C A MYH8 Missense_Mutation p.A202S 0.63 deleterious(0.01) possibly_damaging(0.614) TCGA-37-5819-01 17 10549330 10549330 G A MYH3 Silent p.T306T 0.67 TCGA-37-5819-01 17 26092696 26092696 G T NOS2 Missense_Mutation p.L765M 0.58 deleterious(0.03) benign(0.257) TCGA-37-5819-01 17 26604071 26604071 A C AC061975.8 5'Flank 0.42 TCGA-37-5819-01 17 27958650 27958650 C A SSH2 Nonsense_Mutation p.E1161* 0.21 TCGA-37-5819-01 17 27958751 27958751 G A SSH2 Missense_Mutation p.A1127V 0.17 tolerated_low_confidence(0.07) benign(0.003) TCGA-37-5819-01 17 28804445 28804445 G T GOSR1 5'UTR 0.28 TCGA-37-5819-01 17 2995615 2995615 G T OR1D2 Missense_Mutation p.L226I 0.69 deleterious(0.01) possibly_damaging(0.497) TCGA-37-5819-01 17 3300975 3300975 G T OR1E1 Missense_Mutation p.H244N 0.65 deleterious(0) probably_damaging(0.981) TCGA-37-5819-01 17 33475336 33475336 G T UNC45B Missense_Mutation p.Q18H 0.55 deleterious(0.02) possibly_damaging(0.726) TCGA-37-5819-01 17 33802389 33802389 T A SLFN12L Silent p.S440S 0.23 TCGA-37-5819-01 17 34432747 34432747 C - CCL4 3'UTR 0.15 TCGA-37-5819-01 17 36705431 36705431 G C SRCIN1 Missense_Mutation p.P993R 0.82 deleterious(0.01) probably_damaging(0.91) TCGA-37-5819-01 17 39017886 39017886 C T KRT12 3'UTR 0.14 TCGA-37-5819-01 17 39406116 39406116 C A KRTAP9-4 Nonsense_Mutation p.C48* 0.16 TCGA-37-5819-01 17 40180115 40180115 A T ZNF385C Missense_Mutation p.C374S 0.21 deleterious(0) probably_damaging(0.999) TCGA-37-5819-01 17 41341086 41341086 G C NBR1 Missense_Mutation p.D144H 0.10 tolerated(0.07) benign(0.021) TCGA-37-5819-01 17 42430088 42430088 G C GRN Missense_Mutation p.R568S 0.39 tolerated(0.37) benign(0.039) TCGA-37-5819-01 17 43343814 43343814 G T SPATA32 5'Flank 0.22 TCGA-37-5819-01 17 43912051 43912051 G T CRHR1 Missense_Mutation p.R419L 0.54 deleterious(0.01) probably_damaging(0.988) TCGA-37-5819-01 17 45924907 45924907 G A SP6 Missense_Mutation p.R297C 0.11 deleterious(0) probably_damaging(0.998) TCGA-37-5819-01 17 48145587 48145587 G T ITGA3 Silent p.T194T 0.53 TCGA-37-5819-01 17 50149697 50149697 G A CA10 Nonsense_Mutation p.Q40* 0.38 TCGA-37-5819-01 17 54428241 54428241 T A ANKFN1 Silent p.S104S 0.40 TCGA-37-5819-01 17 54428242 54428242 G T ANKFN1 Nonsense_Mutation p.E105* 0.41 TCGA-37-5819-01 17 56277639 56277639 C G EPX Missense_Mutation p.R531G 0.13 tolerated(0.32) benign(0.013) TCGA-37-5819-01 17 59024696 59024696 G T BCAS3 Nonsense_Mutation p.G402* 0.46 TCGA-37-5819-01 17 59668336 59668336 T G NACA2 Missense_Mutation p.Q69P 0.36 deleterious(0.01) probably_damaging(0.92) TCGA-37-5819-01 17 60028323 60028323 G T MED13 Missense_Mutation p.H2052N 0.10 tolerated(0.14) probably_damaging(0.954) TCGA-37-5819-01 17 60742270 60742270 C A MRC2 Silent p.I160I 0.55 TCGA-37-5819-01 17 61391859 61391859 G A TANC2 Missense_Mutation p.E350K 0.10 tolerated(0.06) benign(0.177) TCGA-37-5819-01 17 64210608 64210608 A T APOH Nonsense_Mutation p.C315* 0.37 TCGA-37-5819-01 17 65083074 65083074 C A HELZ Missense_Mutation p.D1789Y 0.28 deleterious_low_confidence(0) unknown(0) TCGA-37-5819-01 17 65163616 65163616 C G HELZ Missense_Mutation p.C576S 0.19 deleterious(0.02) benign(0.05) TCGA-37-5819-01 17 67197714 67197714 T C ABCA10 Missense_Mutation p.I368V 0.34 tolerated(0.2) benign(0.009) TCGA-37-5819-01 17 7139892 7139892 A G PHF23 Silent p.R118R 0.36 TCGA-37-5819-01 17 72915908 72915908 C A USH1G Silent p.A341A 0.14 TCGA-37-5819-01 17 74288383 74288383 G A QRICH2 Missense_Mutation p.R643C 0.30 tolerated(0.18) benign(0.016) TCGA-37-5819-01 17 7495861 7495861 T C FXR2 Missense_Mutation p.N596D 0.66 tolerated_low_confidence(0.15) benign(0.165) TCGA-37-5819-01 17 7577556 7577556 C A TP53 Missense_Mutation p.C242F 0.67 deleterious(0) probably_damaging(1) TCGA-37-5819-01 17 7606164 7606164 C T WRAP53 Missense_Mutation p.P423L 0.83 deleterious(0.03) benign(0.025) TCGA-37-5819-01 17 76451813 76451813 G C DNAH17 Silent p.A3347A 0.27 TCGA-37-5819-01 17 76831527 76831527 G A USP36 Missense_Mutation p.L104F 0.20 deleterious(0) probably_damaging(0.995) TCGA-37-5819-01 17 78185956 78185956 G A SGSH Missense_Mutation p.P288L 0.31 deleterious(0) possibly_damaging(0.722) TCGA-37-5819-01 17 79219575 79219575 G A SLC38A10 Silent p.S1047S 0.13 TCGA-37-5819-01 17 80579613 80579613 C A WDR45B Missense_Mutation p.G164C 0.54 deleterious(0) probably_damaging(0.999) TCGA-37-5819-01 17 8215926 8215926 C A ARHGEF15 Missense_Mutation p.T190N 0.64 tolerated_low_confidence(0.06) benign(0.001) TCGA-37-5819-01 17 9792900 9792900 G T GLP2R Missense_Mutation p.G514C 0.12 deleterious(0.01) benign(0.011) TCGA-37-5819-01 18 11867225 11867225 G T GNAL Missense_Mutation p.D304Y 0.21 deleterious(0) probably_damaging(0.951) TCGA-37-5819-01 18 12358809 12358809 C A AFG3L2 Missense_Mutation p.A296S 0.19 deleterious(0.01) probably_damaging(0.956) TCGA-37-5819-01 18 19995556 19995556 G A CTAGE1 Missense_Mutation p.P740L 0.50 tolerated(0.09) unknown(0) TCGA-37-5819-01 18 23895265 23895265 A G TAF4B Silent p.L635L 0.24 TCGA-37-5819-01 18 28604414 28604414 G T DSC3 Missense_Mutation p.P226T 0.47 deleterious(0.01) benign(0.39) TCGA-37-5819-01 18 28979253 28979253 G A DSG4 Missense_Mutation p.A342T 0.20 deleterious(0.02) benign(0.004) TCGA-37-5819-01 18 33706432 33706432 T A SLC39A6 Missense_Mutation p.D180V 0.28 tolerated(0.15) benign(0.013) TCGA-37-5819-01 18 42281564 42281564 G T SETBP1 Missense_Mutation p.G85C 0.42 deleterious(0) possibly_damaging(0.904) TCGA-37-5819-01 18 42281695 42281695 G T SETBP1 Missense_Mutation p.E128D 0.21 deleterious(0.02) probably_damaging(0.987) TCGA-37-5819-01 18 44561037 44561037 G T TCEB3B Missense_Mutation p.A200E 0.16 deleterious(0.01) probably_damaging(0.967) TCGA-37-5819-01 18 47813008 47813008 C A CXXC1 Missense_Mutation p.G42W 0.51 deleterious(0) probably_damaging(1) TCGA-37-5819-01 18 48446850 48446850 G T ME2 Missense_Mutation p.Q253H 0.24 deleterious(0.01) probably_damaging(1) TCGA-37-5819-01 18 55024578 55024578 C A ST8SIA3 Missense_Mutation p.P246H 0.49 probably_damaging(1) TCGA-37-5819-01 18 55027251 55027251 C A ST8SIA3 Missense_Mutation p.P296T 0.69 probably_damaging(0.928) TCGA-37-5819-01 18 55270055 55270055 G C NARS Missense_Mutation p.L458V 0.49 tolerated(0.79) benign(0.199) TCGA-37-5819-01 18 56033437 56033437 C T NEDD4L Silent p.Y680Y 0.38 TCGA-37-5819-01 18 57103262 57103262 C A CCBE1 Nonsense_Mutation p.E367* 0.53 TCGA-37-5819-01 18 61232760 61232760 T C SERPINB12 Missense_Mutation p.L243P 0.20 deleterious(0) probably_damaging(0.999) TCGA-37-5819-01 18 63525062 63525062 G C CDH7 Missense_Mutation p.D416H 0.31 deleterious(0) probably_damaging(0.995) TCGA-37-5819-01 18 63530256 63530256 C A CDH7 Intron 0.59 TCGA-37-5819-01 18 7016502 7016502 C A LAMA1 Missense_Mutation p.G993C 0.50 deleterious(0) possibly_damaging(0.853) TCGA-37-5819-01 18 70526277 70526277 C A NETO1 Missense_Mutation p.D85Y 0.23 deleterious(0) probably_damaging(0.973) TCGA-37-5819-01 18 71740911 71740911 A C FBXO15 Missense_Mutation p.C440G 0.47 deleterious(0.01) probably_damaging(0.987) TCGA-37-5819-01 18 72251777 72251777 A T CNDP1 Missense_Mutation p.L501F 0.53 tolerated(0.57) benign(0.02) TCGA-37-5819-01 18 72345798 72345798 G A ZNF407 Missense_Mutation p.M941I 0.14 tolerated(0.32) benign(0) TCGA-37-5819-01 18 76753817 76753817 G T SALL3 Missense_Mutation p.G609V 0.38 tolerated(0.14) benign(0.038) TCGA-37-5819-01 18 77477825 77477825 G A CTDP1 Silent p.A742A 0.24 TCGA-37-5819-01 19 10370337 10370337 A T MRPL4 Missense_Mutation p.T262S 0.65 tolerated(0.13) probably_damaging(0.913) TCGA-37-5819-01 19 110830 110830 C A OR4F17 Missense_Mutation p.P51H 0.18 deleterious(0) probably_damaging(0.999) TCGA-37-5819-01 19 11559427 11559427 C T PRKCSH Silent p.Y416Y 0.77 TCGA-37-5819-01 19 13010343 13010343 G T GCDH Silent p.T435T 0.82 TCGA-37-5819-01 19 14552023 14552023 G T PKN1 Silent p.G36G 0.83 TCGA-37-5819-01 19 17949164 17949164 T G JAK3 Missense_Mutation p.S493R 0.45 tolerated(0.31) benign(0.157) TCGA-37-5819-01 19 19115271 19115271 G A SUGP2 Missense_Mutation p.P879S 0.48 tolerated(0.23) benign(0.009) TCGA-37-5819-01 19 22271876 22271876 C T ZNF257 Missense_Mutation p.R442W 0.18 tolerated(0.35) benign(0.007) TCGA-37-5819-01 19 23414147 23414147 C T ZNF724P Silent p.K49K 0.22 TCGA-37-5819-01 19 30935911 30935911 C T ZNF536 Missense_Mutation p.P481L 0.15 deleterious(0.05) benign(0.022) TCGA-37-5819-01 19 30936632 30936632 C A ZNF536 Silent p.S721S 0.43 TCGA-37-5819-01 19 35657195 35657195 G C FXYD5 Missense_Mutation p.V152L 0.40 deleterious(0) probably_damaging(0.983) TCGA-37-5819-01 19 35829214 35829214 A T CD22 Missense_Mutation p.T377S 0.41 tolerated(0.05) benign(0.258) TCGA-37-5819-01 19 36017720 36017720 C - SBSN Frame_Shift_Del p.K489Rfs*57 0.39 TCGA-37-5819-01 19 36122069 36122069 G T RBM42 Missense_Mutation p.A104S 0.31 deleterious(0.03) probably_damaging(0.986) TCGA-37-5819-01 19 36303119 36303119 G A PRODH2 Missense_Mutation p.R219W 0.42 deleterious(0) possibly_damaging(0.676) TCGA-37-5819-01 19 36334412 36334412 T A NPHS1 Missense_Mutation p.N766Y 0.45 deleterious(0.04) possibly_damaging(0.893) TCGA-37-5819-01 19 36515422 36515422 G T CLIP3 Missense_Mutation p.A265E 0.06 deleterious(0.04) benign(0.02) TCGA-37-5819-01 19 37118532 37118532 A G ZNF382 3'UTR 0.50 TCGA-37-5819-01 19 37904928 37904928 T G ZNF569 Missense_Mutation p.E211A 0.17 deleterious(0.01) benign(0.273) TCGA-37-5819-01 19 38880956 38880956 G A SPRED3 Missense_Mutation p.R5Q 0.14 deleterious(0.01) unknown(0) TCGA-37-5819-01 19 38956762 38956762 C A RYR1 Missense_Mutation p.P968T 0.31 probably_damaging(0.99) TCGA-37-5819-01 19 39374369 39374369 C A SIRT2 Missense_Mutation p.G177W 0.46 deleterious(0) probably_damaging(1) TCGA-37-5819-01 19 42814910 42814910 G T PRR19 3'UTR 0.42 TCGA-37-5819-01 19 42814911 42814911 G C PRR19 3'UTR 0.43 TCGA-37-5819-01 19 43414792 43414792 A T PSG6 Missense_Mutation p.C216S 0.86 deleterious(0) probably_damaging(0.951) TCGA-37-5819-01 19 43702369 43702369 C A PSG4 Missense_Mutation p.E163D 0.42 tolerated(0.85) benign(0.06) TCGA-37-5819-01 19 44223577 44223577 C A IRGC Nonsense_Mutation p.Y289* 0.40 TCGA-37-5819-01 19 47823944 47823944 G A C5AR1 Missense_Mutation p.G304S 0.39 deleterious(0.04) possibly_damaging(0.808) TCGA-37-5819-01 19 47823945 47823945 G T C5AR1 Missense_Mutation p.G304V 0.39 deleterious(0) possibly_damaging(0.856) TCGA-37-5819-01 19 47856334 47856335 - C DHX34 Frame_Shift_Ins p.R17Pfs*30 0.26 TCGA-37-5819-01 19 48953979 48953979 G T GRWD1 Missense_Mutation p.G247C 0.34 deleterious(0) benign(0.017) TCGA-37-5819-01 19 48953980 48953980 G T GRWD1 Missense_Mutation p.G247V 0.33 deleterious(0.01) benign(0.318) TCGA-37-5819-01 19 49558266 49558266 C A CGB7 Splice_Site p.X6_splice 0.16 TCGA-37-5819-01 19 49714808 49714808 A T TRPM4 3'UTR 0.27 TCGA-37-5819-01 19 49950682 49950682 G T PIH1D1 Nonsense_Mutation p.S175* 0.16 TCGA-37-5819-01 19 50361891 50361891 G T PTOV1 Missense_Mutation p.R341L 0.44 deleterious(0.01) benign(0.039) TCGA-37-5819-01 19 50462099 50462099 G A SIGLEC11 Silent p.R388R 0.25 TCGA-37-5819-01 19 50548559 50548559 A T ZNF473 Missense_Mutation p.T287S 0.45 tolerated(0.13) benign(0.044) TCGA-37-5819-01 19 50902108 50902108 G T POLD1 Intron 0.31 TCGA-37-5819-01 19 50984169 50984169 C T EMC10 Silent p.L205L 0.35 TCGA-37-5819-01 19 51771874 51771874 C T SIGLECL1 3'UTR 0.08 TCGA-37-5819-01 19 51981852 51981852 G C CEACAM18 Missense_Mutation p.V47L 0.41 tolerated_low_confidence(0.22) benign(0.134) TCGA-37-5819-01 19 52468188 52468188 G A ZNF350 Silent p.D506D 0.37 TCGA-37-5819-01 19 52619561 52619561 C A ZNF616 Missense_Mutation p.V286F 0.49 tolerated(0.15) benign(0.326) TCGA-37-5819-01 19 53472673 53472673 C A ZNF702P RNA 0.31 TCGA-37-5819-01 19 53793696 53793696 C T BIRC8 5'UTR 0.56 TCGA-37-5819-01 19 53959361 53959361 A T ZNF761 RNA 0.39 TCGA-37-5819-01 19 54406349 54406349 G T PRKCG Missense_Mutation p.G533V 0.49 deleterious(0) probably_damaging(0.965) TCGA-37-5819-01 19 55179209 55179209 A C LILRB4 Silent p.R389R 0.21 TCGA-37-5819-01 19 55179551 55179551 T C LILRB4 3'UTR 0.48 TCGA-37-5819-01 19 55316404 55316404 T C KIR2DL4 Missense_Mutation p.F78S 0.52 tolerated(0.44) benign(0.09) TCGA-37-5819-01 19 55377877 55377877 G C KIR3DL2 Missense_Mutation p.Q386H 0.56 deleterious(0) possibly_damaging(0.519) TCGA-37-5819-01 19 56090015 56090015 C T ZNF579 Missense_Mutation p.A331T 0.16 tolerated(0.37) benign(0.017) TCGA-37-5819-01 19 56243490 56243490 G A NLRP9 Silent p.F569F 0.16 TCGA-37-5819-01 19 56321237 56321237 T A NLRP11 Missense_Mutation p.S247C 0.20 deleterious(0.01) probably_damaging(0.992) TCGA-37-5819-01 19 56329297 56329297 A G NLRP11 Missense_Mutation p.C82R 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-37-5819-01 19 56379151 56379151 T A NLRP4 Missense_Mutation p.Y755N 0.30 tolerated(0.29) benign(0.003) TCGA-37-5819-01 19 56424343 56424343 G - NLRP13 Frame_Shift_Del p.F281Lfs*4 0.40 TCGA-37-5819-01 19 56487650 56487650 T A NLRP8 Missense_Mutation p.C953S 0.13 tolerated(0.42) benign(0.007) TCGA-37-5819-01 19 57327553 57327553 T A PEG3 Missense_Mutation p.S753C 0.33 deleterious(0) probably_damaging(0.998) TCGA-37-5819-01 19 57670559 57670559 C G DUXA Missense_Mutation p.D90H 0.08 tolerated(0.06) possibly_damaging(0.77) TCGA-37-5819-01 19 58320298 58320298 T C ZNF552 Missense_Mutation p.T112A 0.15 tolerated(0.13) probably_damaging(0.985) TCGA-37-5819-01 19 58578313 58578313 C A ZNF135 Missense_Mutation p.T178K 0.53 tolerated(0.18) possibly_damaging(0.645) TCGA-37-5819-01 19 58724257 58724257 G T ZNF274 Missense_Mutation p.R569S 0.48 deleterious(0) probably_damaging(0.997) TCGA-37-5819-01 19 58966989 58966989 A G ZNF324B Silent p.A226A 0.29 TCGA-37-5819-01 19 652863 652863 C A RNF126 Nonsense_Mutation p.E33* 0.80 TCGA-37-5819-01 19 7618810 7618810 C A PNPLA6 Missense_Mutation p.S780R 0.28 deleterious(0.01) benign(0.047) TCGA-37-5819-01 19 7677726 7677726 C T CAMSAP3 Missense_Mutation p.H810Y 0.44 deleterious(0.03) probably_damaging(0.998) TCGA-37-5819-01 19 7743012 7743012 C A C19orf59 Silent p.P69P 0.66 TCGA-37-5819-01 19 9060167 9060167 G A MUC16 Silent p.T9093T 0.78 TCGA-37-5819-01 19 9091069 9091069 C A MUC16 Missense_Mutation p.R249I 0.71 unknown(0) TCGA-37-5819-01 1 100203641 100203641 C A FRRS1 Splice_Site p.X253_splice 0.71 TCGA-37-5819-01 1 109792869 109792869 G C CELSR2 Missense_Mutation p.W56C 0.83 deleterious_low_confidence(0) possibly_damaging(0.759) TCGA-37-5819-01 1 111825295 111825295 G C CHIAP2 RNA 0.67 TCGA-37-5819-01 1 118548175 118548175 A T SPAG17 Silent p.A1546A 0.52 TCGA-37-5819-01 1 12027050 12027050 C G PLOD1 Missense_Mutation p.P553A 0.32 deleterious(0) probably_damaging(0.957) TCGA-37-5819-01 1 12169669 12169669 C T TNFRSF8 Silent p.V156V 0.44 TCGA-37-5819-01 1 1233771 1233771 C A ACAP3 Silent p.L298L 0.44 TCGA-37-5819-01 1 12853487 12853487 C - PRAMEF1 Frame_Shift_Del p.P38Hfs*15 0.19 TCGA-37-5819-01 1 145497486 145497486 C A LIX1L Missense_Mutation p.Q231K 0.48 deleterious(0) possibly_damaging(0.828) TCGA-37-5819-01 1 146766105 146766105 C T CHD1L Missense_Mutation p.P841S 0.16 deleterious(0) probably_damaging(1) TCGA-37-5819-01 1 150724407 150724408 CA T CTSS Frame_Shift_Del p.L159Qfs*27 0.12 TCGA-37-5819-01 1 151263255 151263255 C T ZNF687 Missense_Mutation p.P1095L 0.37 deleterious(0.01) possibly_damaging(0.884) TCGA-37-5819-01 1 151992747 151992747 G T NBPF18P RNA 0.15 TCGA-37-5819-01 1 152081509 152081509 T C TCHH Missense_Mutation p.E1395G 0.14 unknown(0) TCGA-37-5819-01 1 152084022 152084022 C A TCHH Missense_Mutation p.R557S 0.36 unknown(0) TCGA-37-5819-01 1 152275728 152275728 C A FLG Missense_Mutation p.R3878S 0.32 unknown(0) TCGA-37-5819-01 1 152277248 152277248 C A FLG Missense_Mutation p.A3372S 0.29 unknown(0) TCGA-37-5819-01 1 152325907 152325907 G C FLG2 Missense_Mutation p.S1452C 0.16 probably_damaging(0.974) TCGA-37-5819-01 1 152329581 152329581 A T FLG2 Silent p.S227S 0.35 TCGA-37-5819-01 1 152777758 152777758 C T LCE1C Missense_Mutation p.G66E 0.39 tolerated_low_confidence(0.18) unknown(0) TCGA-37-5819-01 1 153362927 153362927 C G S100A8 Missense_Mutation p.V29L 0.35 tolerated(1) benign(0.003) TCGA-37-5819-01 1 153591364 153591364 G A S100A13 3'UTR 0.19 TCGA-37-5819-01 1 154076576 154076576 G A NUP210L Silent p.T577T 0.15 TCGA-37-5819-01 1 155264347 155264347 G T PKLR Silent p.V297V 0.57 TCGA-37-5819-01 1 156236169 156236169 C G SMG5 Missense_Mutation p.E420Q 0.30 tolerated(0.07) possibly_damaging(0.861) TCGA-37-5819-01 1 156256105 156256105 G A TMEM79 Missense_Mutation p.G271E 0.18 tolerated(0.19) benign(0.015) TCGA-37-5819-01 1 156627501 156627501 C G BCAN Missense_Mutation p.N748K 0.17 deleterious(0) probably_damaging(0.993) TCGA-37-5819-01 1 156642660 156642660 G A NES Silent p.V440V 0.17 TCGA-37-5819-01 1 156834197 156834197 G A NTRK1 Silent p.R88R 0.40 TCGA-37-5819-01 1 157767980 157767980 G C FCRL1 Missense_Mutation p.P362R 0.26 deleterious(0.04) benign(0.081) TCGA-37-5819-01 1 157767981 157767981 G T FCRL1 Missense_Mutation p.P362T 0.26 tolerated(0.09) benign(0.147) TCGA-37-5819-01 1 158613164 158613164 C A SPTA1 Nonsense_Mutation p.E1464* 0.48 TCGA-37-5819-01 1 159015160 159015160 C A IFI16 Missense_Mutation p.P468Q 0.50 deleterious(0.02) possibly_damaging(0.904) TCGA-37-5819-01 1 159021696 159021696 C G IFI16 Silent p.A575A 0.15 TCGA-37-5819-01 1 159170624 159170624 C T CADM3 Missense_Mutation p.S404F 0.35 deleterious(0.01) probably_damaging(0.956) TCGA-37-5819-01 1 159170626 159170626 G C CADM3 Missense_Mutation p.D405H 0.35 deleterious(0) probably_damaging(0.952) TCGA-37-5819-01 1 159170801 159170801 G A CADM3 3'UTR 0.33 TCGA-37-5819-01 1 159900956 159900956 G A IGSF9 Nonsense_Mutation p.Q537* 0.17 TCGA-37-5819-01 1 160094994 160094994 C A ATP1A2 Missense_Mutation p.N233K 0.05 deleterious(0) probably_damaging(0.946) TCGA-37-5819-01 1 160124847 160124847 C A ATP1A4 Missense_Mutation p.Q74K 0.13 tolerated(0.44) benign(0.001) TCGA-37-5819-01 1 160281809 160281809 C A COPA Splice_Site p.X309_splice 0.19 TCGA-37-5819-01 1 161495433 161495433 G A HSPA6 Missense_Mutation p.D329N 0.45 deleterious_low_confidence(0.01) benign(0.017) TCGA-37-5819-01 1 162536109 162536109 A G UAP1 Missense_Mutation p.Q84R 0.30 tolerated(0.76) benign(0) TCGA-37-5819-01 1 16259408 16259408 G A SPEN Missense_Mutation p.D2225N 0.48 possibly_damaging(0.588) TCGA-37-5819-01 1 162724627 162724627 G T DDR2 Silent p.R133R 0.35 TCGA-37-5819-01 1 1647830 1647830 C G CDK11A Missense_Mutation p.R148T 0.21 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-37-5819-01 1 167095205 167095205 G A DUSP27 Missense_Mutation p.M279I 0.52 deleterious(0) benign(0.256) TCGA-37-5819-01 1 169822809 169822809 A - C1orf112 3'UTR 0.22 TCGA-37-5819-01 1 171086551 171086551 T C FMO3 Missense_Mutation p.L523P 0.40 deleterious(0.01) probably_damaging(0.971) TCGA-37-5819-01 1 171755175 171755175 G T METTL13 Missense_Mutation p.R357I 0.22 deleterious(0.02) benign(0.003) TCGA-37-5819-01 1 172376937 172376937 C A DNM3 Missense_Mutation p.R850S 0.47 deleterious_low_confidence(0) unknown(0) TCGA-37-5819-01 1 175362977 175362977 T A TNR Missense_Mutation p.E432V 0.06 deleterious(0) probably_damaging(1) TCGA-37-5819-01 1 176525549 176525549 A - PAPPA2 Frame_Shift_Del p.K31Rfs*10 0.29 TCGA-37-5819-01 1 177906595 177906595 C A SEC16B Missense_Mutation p.G753W 0.57 tolerated(0.16) benign(0.049) TCGA-37-5819-01 1 179078241 179078242 - C ABL2 Frame_Shift_Ins p.S721Efs*9 0.39 TCGA-37-5819-01 1 185939523 185939523 T C HMCN1 Silent p.L757L 0.49 TCGA-37-5819-01 1 185987391 185987391 G T HMCN1 Missense_Mutation p.A1793S 0.23 benign(0.423) TCGA-37-5819-01 1 186088426 186088426 T G HMCN1 Silent p.V3984V 0.14 TCGA-37-5819-01 1 186122917 186122917 G T HMCN1 Silent p.G5018G 0.29 TCGA-37-5819-01 1 186278003 186278003 C T PRG4 Missense_Mutation p.T1051I 0.14 unknown(0) TCGA-37-5819-01 1 186305817 186305817 C T TPR Missense_Mutation p.E1506K 0.19 benign(0.292) TCGA-37-5819-01 1 196309614 196309614 G T KCNT2 Missense_Mutation p.T547K 0.30 tolerated(0.05) benign(0.069) TCGA-37-5819-01 1 197398679 197398679 A T CRB1 Missense_Mutation p.Q926L 0.51 deleterious(0.02) benign(0.08) TCGA-37-5819-01 1 197398732 197398732 C T CRB1 Nonsense_Mutation p.Q944* 0.08 TCGA-37-5819-01 1 200017935 200017935 A T NR5A2 Nonsense_Mutation p.R367* 0.33 TCGA-37-5819-01 1 20005658 20005658 C A HTR6 Missense_Mutation p.L374M 0.91 tolerated(0.19) benign(0.347) TCGA-37-5819-01 1 201029835 201029835 T A CACNA1S Missense_Mutation p.Y1122F 0.50 deleterious(0) probably_damaging(0.916) TCGA-37-5819-01 1 201047033 201047033 G T CACNA1S Silent p.R531R 0.38 TCGA-37-5819-01 1 202302223 202302223 T A UBE2T Splice_Site p.X129_splice 0.45 TCGA-37-5819-01 1 202727593 202727593 T A KDM5B Missense_Mutation p.R375W 0.37 deleterious(0) probably_damaging(0.999) TCGA-37-5819-01 1 203452366 203452366 C T PRELP Silent p.A18A 0.30 TCGA-37-5819-01 1 204426972 204426972 C A PIK3C2B Missense_Mutation p.V533F 0.27 deleterious(0) benign(0.249) TCGA-37-5819-01 1 209956925 209956925 C T C1orf74 Missense_Mutation p.A19T 0.27 deleterious(0) probably_damaging(0.998) TCGA-37-5819-01 1 210006670 210006670 A T DIEXF Missense_Mutation p.S177C 0.19 tolerated(0.07) benign(0.345) TCGA-37-5819-01 1 21051028 21051028 G C SH2D5 Missense_Mutation p.T164R 0.77 tolerated(0.43) benign(0.06) TCGA-37-5819-01 1 212151614 212151614 C A INTS7 Silent p.L490L 0.19 TCGA-37-5819-01 1 215256605 215256605 G T KCNK2 5'UTR 0.45 TCGA-37-5819-01 1 22155925 22155925 G A HSPG2 Silent p.S3981S 0.72 TCGA-37-5819-01 1 223943351 223943351 G T CAPN2 Missense_Mutation p.E435D 0.48 deleterious(0.03) possibly_damaging(0.788) TCGA-37-5819-01 1 229676360 229676360 A C ABCB10 Missense_Mutation p.F399C 0.44 deleterious(0) probably_damaging(0.992) TCGA-37-5819-01 1 236396138 236396138 G A ERO1LB Silent p.G225G 0.26 TCGA-37-5819-01 1 236646531 236646531 G T EDARADD 3'Flank 0.56 TCGA-37-5819-01 1 236746380 236746380 C G HEATR1 Silent p.S786S 0.29 TCGA-37-5819-01 1 237755149 237755149 C A RYR2 Missense_Mutation p.S1424Y 0.53 possibly_damaging(0.757) TCGA-37-5819-01 1 237777541 237777541 C A RYR2 Missense_Mutation p.L1705M 0.47 probably_damaging(0.983) TCGA-37-5819-01 1 237817615 237817615 C A RYR2 Nonsense_Mutation p.C2622* 0.22 TCGA-37-5819-01 1 237947411 237947411 G T RYR2 Silent p.L4133L 0.47 TCGA-37-5819-01 1 237947456 237947456 C A RYR2 Silent p.V4148V 0.32 TCGA-37-5819-01 1 240939492 240939492 T G RGS7 Silent p.R479R 0.20 TCGA-37-5819-01 1 24143179 24143179 C A HMGCL Missense_Mutation p.G112C 0.68 deleterious(0) probably_damaging(0.995) TCGA-37-5819-01 1 247024390 247024390 C A AHCTF1 Missense_Mutation p.D1324Y 0.26 deleterious(0) probably_damaging(0.984) TCGA-37-5819-01 1 248039721 248039721 C T TRIM58 Missense_Mutation p.A464V 0.20 tolerated(0.6) benign(0.005) TCGA-37-5819-01 1 248085221 248085221 G A OR2T8 Missense_Mutation p.R301K 0.29 tolerated(1) benign(0.001) TCGA-37-5819-01 1 248263252 248263252 G T OR2L13 Missense_Mutation p.W192L 0.22 tolerated(0.68) possibly_damaging(0.857) TCGA-37-5819-01 1 248551326 248551326 G T OR2T6 Silent p.R139R 0.26 TCGA-37-5819-01 1 248616139 248616139 T C OR2T2 Missense_Mutation p.V14A 0.12 deleterious(0) benign(0.014) TCGA-37-5819-01 1 248737846 248737846 G T OR2T34 Silent p.L71L 0.38 TCGA-37-5819-01 1 26612496 26612496 C T UBXN11 Missense_Mutation p.D198N 0.83 deleterious(0) probably_damaging(1) TCGA-37-5819-01 1 34076847 34076847 G A CSMD2 Missense_Mutation p.A2006V 0.83 tolerated(0.38) benign(0.256) TCGA-37-5819-01 1 3701698 3701698 C A LRRC47 Missense_Mutation p.V383F 0.30 deleterious(0) probably_damaging(0.915) TCGA-37-5819-01 1 52227552 52227552 G T OSBPL9 Missense_Mutation p.L239F 0.77 tolerated(0.33) benign(0.183) TCGA-37-5819-01 1 52828278 52828278 C - CC2D1B Frame_Shift_Del p.Q71Rfs*36 0.48 TCGA-37-5819-01 1 6680350 6680350 G T PHF13 Missense_Mutation p.R210L 0.67 deleterious(0.01) possibly_damaging(0.759) TCGA-37-5819-01 1 70226034 70226034 G A LRRC7 Silent p.E49E 0.50 TCGA-37-5819-01 1 74663869 74663869 G C LRRIQ3 5'UTR 0.55 TCGA-37-5819-01 1 75038632 75038632 G T C1orf173 Missense_Mutation p.A921D 0.68 tolerated(0.06) benign(0.372) TCGA-37-5819-01 1 77333215 77333215 G T ST6GALNAC5 5'UTR 0.75 TCGA-37-5819-01 1 7792569 7792569 G C CAMTA1 Missense_Mutation p.E992D 0.53 tolerated(0.05) probably_damaging(0.986) TCGA-37-5819-01 1 82452998 82452998 C T LPHN2 Intron 0.80 TCGA-37-5819-01 1 85484903 85484903 C A MCOLN3 Missense_Mutation p.R522L 0.81 deleterious(0.04) benign(0.031) TCGA-37-5819-01 1 85486820 85486820 C T MCOLN3 Missense_Mutation p.S487N 0.74 deleterious(0) probably_damaging(0.998) TCGA-37-5819-01 1 86581015 86581015 C A COL24A1 Missense_Mutation p.G513V 0.73 deleterious(0) probably_damaging(1) TCGA-37-5819-01 1 880525 880525 C A NOC2L Silent p.G685G 0.50 TCGA-37-5819-01 1 89449610 89449610 C G RBMXL1 5'UTR 0.45 TCGA-37-5819-01 1 89729589 89729589 G T GBP5 Missense_Mutation p.L398M 0.68 tolerated(0.2) benign(0.016) TCGA-37-5819-01 1 92737095 92737095 C A GLMN Missense_Mutation p.D284Y 0.67 deleterious(0) possibly_damaging(0.834) TCGA-37-5819-01 20 13260384 13260385 - T ISM1 Frame_Shift_Ins p.W161Cfs*47 0.33 TCGA-37-5819-01 20 1458025 1458025 C A SIRPB2 Missense_Mutation p.A273S 0.43 tolerated(0.43) benign(0.005) TCGA-37-5819-01 20 29960684 29960684 G T DEFB118 Missense_Mutation p.W28L 0.40 tolerated(0.46) possibly_damaging(0.876) TCGA-37-5819-01 20 3190180 3190180 G - ITPA 5'UTR 0.29 TCGA-37-5819-01 20 33329845 33329845 C A NCOA6 Silent p.V1405V 0.43 TCGA-37-5819-01 20 368924 368924 A T TRIB3 Silent p.T90T 0.36 TCGA-37-5819-01 20 40125928 40125928 C A CHD6 Intron 0.38 TCGA-37-5819-01 20 41408888 41408888 C A PTPRT Missense_Mutation p.D180Y 0.35 deleterious(0) probably_damaging(0.976) TCGA-37-5819-01 20 4163291 4163291 G C SMOX Missense_Mutation p.E389Q 0.47 deleterious(0) probably_damaging(0.989) TCGA-37-5819-01 20 42158983 42158983 G T L3MBTL1 Missense_Mutation p.W350C 0.38 deleterious(0) probably_damaging(1) TCGA-37-5819-01 20 43530314 43530314 C T YWHAB Missense_Mutation p.S47F 0.40 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-37-5819-01 20 43835675 43835675 G A SEMG1 5'UTR 0.38 TCGA-37-5819-01 20 44751260 44751260 C T CD40 Missense_Mutation p.R90W 0.42 tolerated(0.12) benign(0.014) TCGA-37-5819-01 20 45905058 45905058 C A ZMYND8 Missense_Mutation p.A494S 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.889) TCGA-37-5819-01 20 48522559 48522559 C A SPATA2 Missense_Mutation p.G387V 0.33 deleterious(0) possibly_damaging(0.787) TCGA-37-5819-01 20 52645317 52645317 C A BCAS1 Missense_Mutation p.D113Y 0.32 deleterious(0) probably_damaging(1) TCGA-37-5819-01 20 5294857 5294857 C A PROKR2 Missense_Mutation p.K53N 0.43 deleterious(0.01) possibly_damaging(0.48) TCGA-37-5819-01 20 55027069 55027069 C A CASS4 Missense_Mutation p.F279L 0.34 tolerated(0.86) benign(0.003) TCGA-37-5819-01 20 57896191 57896191 T C EDN3 Missense_Mutation p.V162A 0.46 tolerated(0.38) benign(0.001) TCGA-37-5819-01 20 58571763 58571763 G T CDH26 Missense_Mutation p.G656C 0.48 deleterious(0) probably_damaging(0.999) TCGA-37-5819-01 20 9388677 9388677 A T PLCB4 Silent p.V575V 0.40 TCGA-37-5819-01 20 9538323 9538323 G T PAK7 Missense_Mutation p.L559I 0.55 deleterious(0) probably_damaging(0.995) TCGA-37-5819-01 21 10998243 10998243 C A TPTE RNA 0.09 TCGA-37-5819-01 21 34921983 34921983 A G SON Missense_Mutation p.D149G 0.70 possibly_damaging(0.539) TCGA-37-5819-01 21 39671792 39671792 G T KCNJ15 Missense_Mutation p.R203S 0.57 deleterious(0) probably_damaging(0.998) TCGA-37-5819-01 21 47423964 47423964 A C COL6A1 3'UTR 0.11 TCGA-37-5819-01 22 23101502 23101502 C T IGLV2-14 Silent p.N52N 0.33 TCGA-37-5819-01 22 24121573 24121573 G T MMP11 Missense_Mutation p.G103V 0.38 deleterious(0) probably_damaging(0.959) TCGA-37-5819-01 22 26231381 26231381 C A MYO18B Missense_Mutation p.A1060D 0.36 tolerated(0.07) possibly_damaging(0.662) TCGA-37-5819-01 22 26906143 26906143 C G TFIP11 Missense_Mutation p.Q32H 0.41 deleterious(0.05) possibly_damaging(0.827) TCGA-37-5819-01 22 28193590 28193590 G C MN1 Missense_Mutation p.A981G 0.33 benign(0.172) TCGA-37-5819-01 22 28195100 28195100 G T MN1 Missense_Mutation p.H478N 0.41 benign(0.281) TCGA-37-5819-01 22 32293623 32293623 C T DEPDC5 Silent p.S1444S 0.35 TCGA-37-5819-01 22 34046429 34046429 C A LARGE Missense_Mutation p.S111I 0.41 tolerated_low_confidence(0.17) benign(0.248) TCGA-37-5819-01 22 37333900 37333900 G T CSF2RB Nonsense_Mutation p.G684* 0.86 TCGA-37-5819-01 22 39448112 39448112 T G APOBEC3F Missense_Mutation p.C253G 0.69 deleterious(0.03) probably_damaging(0.982) TCGA-37-5819-01 22 41783378 41783378 C G TEF Missense_Mutation p.L61V 0.26 tolerated(0.29) benign(0.015) TCGA-37-5819-01 22 42970809 42970809 C A SERHL2 3'Flank 0.71 TCGA-37-5819-01 22 43465700 43465703 CAGC AGG TTLL1 Frame_Shift_Del p.E87Dfs*38 0.37 TCGA-37-5819-01 22 44592283 44592283 T C PARVG Silent p.N233N 0.31 TCGA-37-5819-01 2 101188050 101188050 A G PDCL3 Splice_Site p.X123_splice 0.33 TCGA-37-5819-01 2 102475492 102475492 G A MAP4K4 Missense_Mutation p.R477Q 0.21 tolerated_low_confidence(0.12) unknown(0) TCGA-37-5819-01 2 103095403 103095403 C A SLC9A4 Nonsense_Mutation p.S121* 0.62 TCGA-37-5819-01 2 107041398 107041398 C T RGPD3 Missense_Mutation p.G1009S 0.46 tolerated(0.57) benign(0.004) TCGA-37-5819-01 2 125530578 125530578 C A CNTNAP5 Missense_Mutation p.N911K 0.49 deleterious(0.01) possibly_damaging(0.7) TCGA-37-5819-01 2 128409084 128409084 G A GPR17 Missense_Mutation p.V287M 0.53 deleterious(0.02) possibly_damaging(0.63) TCGA-37-5819-01 2 128865517 128865517 G T UGGT1 Missense_Mutation p.D95Y 0.45 deleterious(0) probably_damaging(0.933) TCGA-37-5819-01 2 130832536 130832536 G T POTEF Missense_Mutation p.Q837K 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.644) TCGA-37-5819-01 2 131130736 131130736 A G PTPN18 Missense_Mutation p.N441S 0.31 deleterious(0) probably_damaging(0.997) TCGA-37-5819-01 2 131520610 131520610 G A AMER3 Missense_Mutation p.R322H 0.53 tolerated(0.18) benign(0.04) TCGA-37-5819-01 2 136626375 136626375 C A MCM6 Missense_Mutation p.V141L 0.61 deleterious(0) possibly_damaging(0.801) TCGA-37-5819-01 2 138320815 138320815 A T THSD7B Missense_Mutation p.S1058C 0.52 deleterious(0) unknown(0) TCGA-37-5819-01 2 139310249 139310249 G T SPOPL Nonsense_Mutation p.E160* 0.42 TCGA-37-5819-01 2 139429108 139429108 A T NXPH2 Missense_Mutation p.V60D 0.52 deleterious(0.01) possibly_damaging(0.825) TCGA-37-5819-01 2 141110623 141110623 A G LRP1B Missense_Mutation p.V3850A 0.57 benign(0.418) TCGA-37-5819-01 2 141243075 141243075 C A LRP1B Missense_Mutation p.V3088F 0.53 possibly_damaging(0.727) TCGA-37-5819-01 2 143799875 143799875 A C KYNU 3'UTR 0.40 TCGA-37-5819-01 2 145157292 145157292 C T ZEB2 Missense_Mutation p.G488S 0.51 tolerated(0.59) benign(0.025) TCGA-37-5819-01 2 152521924 152521924 C A NEB Nonsense_Mutation p.E1721* 0.63 TCGA-37-5819-01 2 152522777 152522777 C A NEB Missense_Mutation p.A1620S 0.29 benign(0.101) TCGA-37-5819-01 2 159536994 159536994 A G PKP4 Silent p.A1128A 0.57 TCGA-37-5819-01 2 160268843 160268843 T A BAZ2B Intron 0.34 TCGA-37-5819-01 2 163003868 163003868 C A GCG Missense_Mutation p.R83S 0.31 deleterious(0.04) benign(0.297) TCGA-37-5819-01 2 166032929 166032929 C A SCN3A 5'UTR 0.41 TCGA-37-5819-01 2 166152382 166152382 T A SCN2A Missense_Mutation p.F17I 0.16 deleterious(0) benign(0.248) TCGA-37-5819-01 2 166245260 166245260 G T SCN2A Silent p.T1648T 0.22 TCGA-37-5819-01 2 166848103 166848103 C A SCN1A Missense_Mutation p.M1894I 0.26 deleterious(0.01) benign(0.426) TCGA-37-5819-01 2 168102849 168102849 T A XIRP2 Silent p.A1649A 0.27 TCGA-37-5819-01 2 169764643 169764643 A T G6PC2 3'UTR 0.69 TCGA-37-5819-01 2 170361365 170361365 G T BBS5 3'UTR 0.38 TCGA-37-5819-01 2 170361366 170361366 G T BBS5 3'UTR 0.35 TCGA-37-5819-01 2 173362747 173362747 G A ITGA6 Silent p.S1011S 0.32 TCGA-37-5819-01 2 177017725 177017725 G T HOXD3 5'UTR 0.66 TCGA-37-5819-01 2 178977276 178977276 G A RBM45 Translation_Start_Site p.M1? 0.43 deleterious_low_confidence(0) benign(0.216) TCGA-37-5819-01 2 179400322 179400322 T - TTN Frame_Shift_Del p.R33674Dfs*35 0.15 TCGA-37-5819-01 2 179453271 179453271 G T TTN Missense_Mutation p.P21061T 0.38 TCGA-37-5819-01 2 179598064 179598064 T C TTN Missense_Mutation p.K5319R 0.49 TCGA-37-5819-01 2 179742707 179742707 A T CCDC141 Missense_Mutation p.L628H 0.28 deleterious(0) probably_damaging(0.979) TCGA-37-5819-01 2 183866885 183866885 T C NCKAP1 Missense_Mutation p.N167S 0.31 deleterious(0) possibly_damaging(0.495) TCGA-37-5819-01 2 186670556 186670556 C G FSIP2 Nonsense_Mutation p.S5597* 0.51 TCGA-37-5819-01 2 186672215 186672215 A T FSIP2 Missense_Mutation p.Q6150L 0.23 benign(0.096) TCGA-37-5819-01 2 189861179 189861179 G A COL3A1 Missense_Mutation p.G573D 0.49 unknown(0) TCGA-37-5819-01 2 189872290 189872290 G A COL3A1 Missense_Mutation p.G1107E 0.24 probably_damaging(1) TCGA-37-5819-01 2 196726627 196726627 A T DNAH7 Nonsense_Mutation p.L2517* 0.09 TCGA-37-5819-01 2 196729219 196729219 C A DNAH7 Missense_Mutation p.C2387F 0.05 deleterious(0) benign(0.356) TCGA-37-5819-01 2 201796149 201796149 C A ORC2 Missense_Mutation p.S277I 0.29 tolerated(0.09) possibly_damaging(0.633) TCGA-37-5819-01 2 201796151 201796151 C T ORC2 Silent p.L276L 0.28 TCGA-37-5819-01 2 202252712 202252712 C A TRAK2 Missense_Mutation p.K470N 0.30 tolerated(0.1) benign(0.007) TCGA-37-5819-01 2 209188864 209188864 A T PIKFYVE Splice_Site p.X731_splice 0.47 TCGA-37-5819-01 2 21230480 21230480 C A APOB Missense_Mutation p.W3087L 0.14 probably_damaging(0.994) TCGA-37-5819-01 2 21255445 21255445 G A APOB Missense_Mutation p.T378I 0.47 probably_damaging(0.999) TCGA-37-5819-01 2 212566892 212566892 C A ERBB4 Splice_Site p.X430_splice 0.60 TCGA-37-5819-01 2 214181977 214181977 A C SPAG16 Silent p.R145R 0.09 TCGA-37-5819-01 2 219029727 219029727 C A CXCR1 Missense_Mutation p.G70C 0.50 deleterious(0.03) possibly_damaging(0.867) TCGA-37-5819-01 2 219679822 219679822 G T CYP27A1 3'UTR 0.32 TCGA-37-5819-01 2 220167145 220167145 G T PTPRN Silent p.P236P 0.28 TCGA-37-5819-01 2 220422617 220422617 C G OBSL1 Missense_Mutation p.A1240P 0.17 deleterious(0.01) probably_damaging(0.976) TCGA-37-5819-01 2 220501124 220501124 G T SLC4A3 Silent p.V791V 0.29 TCGA-37-5819-01 2 231380454 231380454 G C SP100 Intron 0.34 TCGA-37-5819-01 2 233400079 233400079 C A CHRND 3'UTR 0.35 TCGA-37-5819-01 2 239155051 239155051 A T PER2 Missense_Mutation p.S1245T 0.31 tolerated(0.59) benign(0.002) TCGA-37-5819-01 2 242674879 242674879 G A D2HGDH Silent p.T80T 0.31 TCGA-37-5819-01 2 242738525 242738525 C A GAL3ST2 Silent p.L25L 0.28 TCGA-37-5819-01 2 26696407 26696407 T C OTOF Missense_Mutation p.K1146R 0.33 deleterious(0.03) benign(0.072) TCGA-37-5819-01 2 26696417 26696417 G T OTOF Silent p.R1143R 0.32 TCGA-37-5819-01 2 27478107 27478107 G C SLC30A3 3'UTR 0.50 TCGA-37-5819-01 2 30863433 30863433 G A LCLAT1 Missense_Mutation p.C398Y 0.56 tolerated(0.25) benign(0.017) TCGA-37-5819-01 2 31595154 31595154 C G XDH Missense_Mutation p.R599P 0.44 tolerated(0.4) benign(0.006) TCGA-37-5819-01 2 32750675 32750675 T C BIRC6 Missense_Mutation p.L3967P 0.18 probably_damaging(0.998) TCGA-37-5819-01 2 33589321 33589321 G T LTBP1 Missense_Mutation p.G1480C 0.34 deleterious(0) probably_damaging(1) TCGA-37-5819-01 2 33752399 33752399 G C RASGRP3 Missense_Mutation p.V335L 0.54 tolerated(0.37) benign(0.001) TCGA-37-5819-01 2 50149125 50149125 G T NRXN1 Missense_Mutation p.S1534Y 0.19 tolerated(0.18) possibly_damaging(0.525) TCGA-37-5819-01 2 53941600 53941600 G A ASB3 Missense_Mutation p.R336W 0.43 deleterious(0) possibly_damaging(0.462) TCGA-37-5819-01 2 61522091 61522091 C A USP34 Missense_Mutation p.S1485I 0.22 deleterious(0.01) possibly_damaging(0.606) TCGA-37-5819-01 2 68544208 68544208 C A CNRIP1 Intron 0.32 TCGA-37-5819-01 2 69207139 69207139 A T GKN1 Missense_Mutation p.N151I 0.40 tolerated(0.17) possibly_damaging(0.543) TCGA-37-5819-01 2 70922931 70922931 C A ADD2 Missense_Mutation p.L159F 0.33 deleterious(0.01) possibly_damaging(0.757) TCGA-37-5819-01 2 79255037 79255037 T A REG3G Nonsense_Mutation p.C146* 0.39 TCGA-37-5819-01 2 79363958 79363958 G C REG1P RNA 0.38 TCGA-37-5819-01 2 88474199 88474199 G T THNSL2 Missense_Mutation p.V89L 0.39 deleterious(0.01) possibly_damaging(0.706) TCGA-37-5819-01 2 90121709 90121709 C G IGKV1D-17 Missense_Mutation p.P18A 0.73 deleterious(0.03) benign(0.168) TCGA-37-5819-01 2 98809499 98809499 G T VWA3B Missense_Mutation p.Q535H 0.52 deleterious(0) probably_damaging(0.964) TCGA-37-5819-01 2 99170832 99170832 T G INPP4A Silent p.S487S 0.30 TCGA-37-5819-01 3 101038473 101038473 C A IMPG2 Missense_Mutation p.V97F 0.31 deleterious(0.02) possibly_damaging(0.58) TCGA-37-5819-01 3 105389121 105389121 G C CBLB Missense_Mutation p.T882S 0.36 tolerated_low_confidence(1) benign(0) TCGA-37-5819-01 3 111603485 111603485 T C PHLDB2 Silent p.D187D 0.48 TCGA-37-5819-01 3 112328845 112328845 C T CCDC80 Missense_Mutation p.S802N 0.38 tolerated(0.26) benign(0.06) TCGA-37-5819-01 3 114069245 114069245 C A ZBTB20 Silent p.L560L 0.36 TCGA-37-5819-01 3 119209540 119209540 G T POGLUT1 Missense_Mutation p.V314F 0.32 deleterious(0) possibly_damaging(0.868) TCGA-37-5819-01 3 120417269 120417269 C A RABL3 Splice_Site p.X178_splice 0.36 TCGA-37-5819-01 3 126062660 126062660 C T KLF15 Silent p.E387E 0.38 TCGA-37-5819-01 3 126218941 126218941 C A UROC1 Missense_Mutation p.W461L 0.07 deleterious(0) probably_damaging(0.999) TCGA-37-5819-01 3 126229583 126229583 C A UROC1 Missense_Mutation p.A61S 0.39 tolerated(0.06) probably_damaging(0.968) TCGA-37-5819-01 3 126229584 126229584 C A UROC1 Silent p.L60L 0.38 TCGA-37-5819-01 3 128204697 128204697 G A GATA2 Silent p.T248T 0.41 TCGA-37-5819-01 3 128526389 128526389 G T RAB7A Missense_Mutation p.A135S 0.42 tolerated(1) benign(0.001) TCGA-37-5819-01 3 130174315 130174315 C A COL6A5 Missense_Mutation p.Q2199K 0.34 tolerated(0.13) benign(0.021) TCGA-37-5819-01 3 130292820 130292820 G T COL6A6 Missense_Mutation p.D1000Y 0.44 deleterious(0) probably_damaging(1) TCGA-37-5819-01 3 132319692 132319692 G T ACKR4 Nonsense_Mutation p.G151* 0.34 TCGA-37-5819-01 3 132319693 132319693 G T ACKR4 Missense_Mutation p.G151V 0.35 deleterious(0.02) possibly_damaging(0.719) TCGA-37-5819-01 3 133371465 133371465 G A TOPBP1 Missense_Mutation p.L311F 0.37 tolerated(0.08) benign(0.043) TCGA-37-5819-01 3 137484093 137484093 C G SOX14 Missense_Mutation p.P156R 0.58 deleterious(0.03) benign(0.052) TCGA-37-5819-01 3 138289268 138289268 C A CEP70 Missense_Mutation p.M119I 0.39 deleterious(0.04) benign(0.067) TCGA-37-5819-01 3 138400810 138400810 G A PIK3CB Missense_Mutation p.R835W 0.33 deleterious(0) probably_damaging(0.988) TCGA-37-5819-01 3 140282980 140282980 C A CLSTN2 Missense_Mutation p.P887H 0.36 deleterious(0) probably_damaging(1) TCGA-37-5819-01 3 147108857 147108857 C A ZIC4 Missense_Mutation p.G339W 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-37-5819-01 3 14862055 14862055 G T FGD5 Missense_Mutation p.V493F 0.79 deleterious(0) probably_damaging(0.999) TCGA-37-5819-01 3 151045766 151045766 C T P2RY13 3'UTR 0.33 TCGA-37-5819-01 3 153905539 153905539 T C ARHGEF26 Missense_Mutation p.V518A 0.30 deleterious(0) possibly_damaging(0.823) TCGA-37-5819-01 3 158983161 158983161 T C IQCJ Missense_Mutation p.I150T 0.43 deleterious_low_confidence(0) benign(0.154) TCGA-37-5819-01 3 160474419 160474419 G C PPM1L Missense_Mutation p.R108P 0.32 deleterious(0) probably_damaging(0.992) TCGA-37-5819-01 3 164750346 164750346 G T SI Missense_Mutation p.N900K 0.38 tolerated(0.91) benign(0.001) TCGA-37-5819-01 3 172165633 172165633 C A GHSR Missense_Mutation p.D191Y 0.51 tolerated(0.09) probably_damaging(0.963) TCGA-37-5819-01 3 173525585 173525585 G T NLGN1 Silent p.V203V 0.43 TCGA-37-5819-01 3 173998396 173998396 C T NLGN1 Missense_Mutation p.P592L 0.38 deleterious(0) probably_damaging(0.997) TCGA-37-5819-01 3 178916930 178916930 G T PIK3CA Missense_Mutation p.G106V 0.25 deleterious(0.01) probably_damaging(1) TCGA-37-5819-01 3 179050862 179050862 G C ZNF639 Silent p.L85L 0.23 TCGA-37-5819-01 3 182602633 182602633 G T ATP11B Missense_Mutation p.G868C 0.35 deleterious(0) probably_damaging(1) TCGA-37-5819-01 3 183824114 183824114 C A HTR3E Missense_Mutation p.T401N 0.65 tolerated(0.18) benign(0.055) TCGA-37-5819-01 3 184003353 184003353 G T ECE2 Silent p.L530L 0.50 TCGA-37-5819-01 3 185209360 185209360 T A TMEM41A Missense_Mutation p.T254S 0.24 tolerated_low_confidence(0.83) benign(0) TCGA-37-5819-01 3 185414409 185414409 C T IGF2BP2 Missense_Mutation p.V111M 0.61 deleterious(0) probably_damaging(0.936) TCGA-37-5819-01 3 191179134 191179134 C G PYDC2 Missense_Mutation p.S61R 0.32 tolerated(0.11) possibly_damaging(0.474) TCGA-37-5819-01 3 196386836 196386836 C T NRROS Missense_Mutation p.R108C 0.11 deleterious(0.03) benign(0.011) TCGA-37-5819-01 3 196386993 196386993 G T NRROS Missense_Mutation p.R160L 0.23 deleterious(0) benign(0.002) TCGA-37-5819-01 3 197556525 197556525 C G LRCH3 Missense_Mutation p.P290A 0.60 deleterious(0) possibly_damaging(0.693) TCGA-37-5819-01 3 23541127 23541127 G T UBE2E2 Nonsense_Mutation p.E86* 0.46 TCGA-37-5819-01 3 31871714 31871714 T C OSBPL10 Missense_Mutation p.S183G 0.31 tolerated(0.1) benign(0.005) TCGA-37-5819-01 3 37340341 37340341 G T GOLGA4 Missense_Mutation p.V300L 0.69 benign(0.016) TCGA-37-5819-01 3 432814 432814 G T CHL1 Missense_Mutation p.E921D 0.82 tolerated(0.79) benign(0.356) TCGA-37-5819-01 3 44685539 44685539 C G ZNF197 Missense_Mutation p.L973V 0.38 tolerated(0.09) probably_damaging(0.997) TCGA-37-5819-01 3 45077309 45077309 G C CLEC3B Missense_Mutation p.G168R 0.26 deleterious(0) probably_damaging(0.998) TCGA-37-5819-01 3 48611122 48611122 C - COL7A1 Splice_Site p.X2191_splice 0.45 TCGA-37-5819-01 3 48677666 48677666 C A CELSR3 Missense_Mutation p.G3118C 0.67 tolerated_low_confidence(0.1) possibly_damaging(0.479) TCGA-37-5819-01 3 48677681 48677681 C A CELSR3 Nonsense_Mutation p.E3113* 0.78 TCGA-37-5819-01 3 58552265 58552265 G T FAM107A 3'UTR 0.65 TCGA-37-5819-01 3 62358019 62358019 C A FEZF2 Silent p.L175L 0.60 TCGA-37-5819-01 3 69112255 69112255 C A UBA3 Missense_Mutation p.D191Y 0.75 deleterious(0) probably_damaging(0.99) TCGA-37-5819-01 3 74411136 74411136 C A CNTN3 Silent p.V423V 0.58 TCGA-37-5819-01 3 75679932 75679932 G T MIR1324 RNA 0.22 TCGA-37-5819-01 3 78666832 78666832 T A ROBO1 Missense_Mutation p.E1412V 0.65 deleterious(0) probably_damaging(0.977) TCGA-37-5819-01 3 87325618 87325618 C A POU1F1 5'UTR 0.79 TCGA-37-5819-01 3 89259571 89259571 C A EPHA3 Missense_Mutation p.P239T 0.70 tolerated(0.9) benign(0.074) TCGA-37-5819-01 3 9490271 9490271 G T SETD5 Missense_Mutation p.R768L 0.74 deleterious(0) probably_damaging(0.998) TCGA-37-5819-01 3 97983502 97983502 C A OR5H6 Missense_Mutation p.T125N 0.42 tolerated(0.06) benign(0.234) TCGA-37-5819-01 3 98001811 98001811 A T OR5H2 Missense_Mutation p.E27V 0.48 deleterious(0.03) benign(0.288) TCGA-37-5819-01 3 98188985 98188985 T A OR5K1 Missense_Mutation p.C189S 0.29 deleterious(0) benign(0.224) TCGA-37-5819-01 3 9955643 9955643 C T IL17RE Missense_Mutation p.R411W 0.82 deleterious(0) possibly_damaging(0.462) TCGA-37-5819-01 4 110384608 110384608 G A SEC24B Missense_Mutation p.G229S 0.60 tolerated_low_confidence(0.28) benign(0.009) TCGA-37-5819-01 4 115544082 115544082 G A UGT8 Missense_Mutation p.G16R 0.81 tolerated(0.47) possibly_damaging(0.734) TCGA-37-5819-01 4 115544083 115544083 G T UGT8 Missense_Mutation p.G16V 0.81 tolerated(0.2) possibly_damaging(0.843) TCGA-37-5819-01 4 115858509 115858509 G T NDST4 Silent p.R458R 0.67 TCGA-37-5819-01 4 121961197 121961197 C G NDNF Silent p.V67V 0.63 TCGA-37-5819-01 4 122053733 122053733 T C TNIP3 3'UTR 0.50 TCGA-37-5819-01 4 145581062 145581062 G A HHIP Intron 0.29 TCGA-37-5819-01 4 147561088 147561088 G A POU4F2 Missense_Mutation p.V120I 0.09 tolerated_low_confidence(0.08) possibly_damaging(0.796) TCGA-37-5819-01 4 154217020 154217020 G A TRIM2 Missense_Mutation p.V448M 0.73 deleterious(0.01) possibly_damaging(0.62) TCGA-37-5819-01 4 155507571 155507571 C A FGA Missense_Mutation p.G337V 0.81 deleterious_low_confidence(0.01) possibly_damaging(0.686) TCGA-37-5819-01 4 15818263 15818263 G T CD38 Missense_Mutation p.K121N 0.64 deleterious(0) possibly_damaging(0.858) TCGA-37-5819-01 4 164271880 164271880 C T NPY5R Missense_Mutation p.T152I 0.64 deleterious(0) probably_damaging(1) TCGA-37-5819-01 4 185694258 185694258 A G ACSL1 Missense_Mutation p.S298P 0.50 deleterious(0.01) benign(0.345) TCGA-37-5819-01 4 189065190 189065190 G T TRIML1 Missense_Mutation p.R253S 0.60 deleterious(0) probably_damaging(0.996) TCGA-37-5819-01 4 30724272 30724272 G C PCDH7 Missense_Mutation p.D410H 0.62 deleterious(0) probably_damaging(1) TCGA-37-5819-01 4 3768709 3768709 G C ADRA2C Missense_Mutation p.V126L 0.55 deleterious(0.01) benign(0.03) TCGA-37-5819-01 4 38879895 38879895 A G FAM114A1 Missense_Mutation p.I66V 0.64 tolerated_low_confidence(0.53) benign(0.009) TCGA-37-5819-01 4 40356465 40356465 C G CHRNA9 Missense_Mutation p.D456E 0.19 deleterious(0) probably_damaging(1) TCGA-37-5819-01 4 4228266 4228266 C A OTOP1 Missense_Mutation p.W109L 0.45 deleterious(0.01) probably_damaging(0.977) TCGA-37-5819-01 4 42554597 42554597 T G ATP8A1 Missense_Mutation p.T482P 0.64 deleterious(0.01) possibly_damaging(0.773) TCGA-37-5819-01 4 42588390 42588390 C A ATP8A1 Missense_Mutation p.G233V 0.62 deleterious(0) probably_damaging(1) TCGA-37-5819-01 4 52860817 52860817 C A LRRC66 Nonsense_Mutation p.E791* 0.74 TCGA-37-5819-01 4 52860818 52860818 C A LRRC66 Silent p.L790L 0.75 TCGA-37-5819-01 4 55131324 55131324 G C PDGFRA Intron 0.67 TCGA-37-5819-01 4 62599252 62599252 G T LPHN3 Missense_Mutation p.G392V 0.91 deleterious(0) probably_damaging(1) TCGA-37-5819-01 4 68928984 68928984 C A TMPRSS11F Intron 0.76 TCGA-37-5819-01 4 69093705 69093705 C A TMPRSS11B Missense_Mutation p.G392V 0.73 deleterious(0) possibly_damaging(0.881) TCGA-37-5819-01 4 69101752 69101752 C T TMPRSS11B Silent p.K92K 0.69 TCGA-37-5819-01 4 70505310 70505310 G T UGT2A2 Missense_Mutation p.L17M 0.76 deleterious(0.03) possibly_damaging(0.805) TCGA-37-5819-01 4 70620797 70620797 G T SULT1B1 Missense_Mutation p.P47T 0.77 deleterious(0) probably_damaging(0.994) TCGA-37-5819-01 4 74350016 74350016 T A AFM Missense_Mutation p.F60Y 0.64 tolerated(0.65) benign(0.371) TCGA-37-5819-01 4 80329252 80329252 G T GK2 Missense_Mutation p.L35I 0.69 tolerated(1) benign(0.17) TCGA-37-5819-01 4 88532089 88532089 G A DSPP Nonsense_Mutation p.W10* 0.70 TCGA-37-5819-01 4 94343994 94343994 G T GRID2 Missense_Mutation p.V474F 0.67 deleterious(0) probably_damaging(0.996) TCGA-37-5819-01 4 99982392 99982392 T G METAP1 Missense_Mutation p.L362R 0.74 deleterious(0) probably_damaging(1) TCGA-37-5819-01 5 10402206 10402206 C T MARCH6 Silent p.T336T 0.41 TCGA-37-5819-01 5 118440944 118440944 G T DMXL1 Missense_Mutation p.D119Y 0.69 deleterious(0) probably_damaging(0.935) TCGA-37-5819-01 5 121356226 121356226 G C SRFBP1 Missense_Mutation p.E266Q 0.68 deleterious(0) probably_damaging(0.935) TCGA-37-5819-01 5 127710431 127710432 - G FBN2 Frame_Shift_Ins p.C662Sfs*16 0.44 TCGA-37-5819-01 5 135610393 135610393 C A TRPC7 Missense_Mutation p.A366S 0.89 tolerated(0.29) benign(0.05) TCGA-37-5819-01 5 137089649 137089649 C A HNRNPA0 Missense_Mutation p.C36F 0.89 deleterious(0.02) possibly_damaging(0.722) TCGA-37-5819-01 5 139876646 139876663 TTTATCATCTCCACAGTG - ANKHD1 In_Frame_Del p.L930_C935del 0.18 TCGA-37-5819-01 5 140229700 140229700 G T PCDHA9 Silent p.A540A 0.77 TCGA-37-5819-01 5 140249689 140249689 C A PCDHA11 Missense_Mutation p.T334K 0.75 tolerated_low_confidence(0.64) benign(0.066) TCGA-37-5819-01 5 140348236 140348236 G A PCDHAC2 Missense_Mutation p.D629N 0.51 deleterious(0.02) probably_damaging(0.926) TCGA-37-5819-01 5 140476696 140476696 C T PCDHB2 Silent p.P774P 0.70 TCGA-37-5819-01 5 140501817 140501817 G T PCDHB4 Missense_Mutation p.Q79H 0.70 tolerated_low_confidence(0.09) benign(0.204) TCGA-37-5819-01 5 140580181 140580181 C G PCDHB11 Missense_Mutation p.C278W 0.27 deleterious_low_confidence(0.01) benign(0) TCGA-37-5819-01 5 140753711 140753711 G T PCDHGA6 Missense_Mutation p.G21W 0.77 deleterious_low_confidence(0.04) benign(0.031) TCGA-37-5819-01 5 140773410 140773410 A T PCDHGA8 Nonsense_Mutation p.R344* 0.76 TCGA-37-5819-01 5 150275522 150275522 G T ZNF300 Missense_Mutation p.H443N 0.40 deleterious(0) probably_damaging(0.998) TCGA-37-5819-01 5 150948104 150948104 G T FAT2 Missense_Mutation p.A130D 0.80 possibly_damaging(0.77) TCGA-37-5819-01 5 156589583 156589583 C A FAM71B Missense_Mutation p.V565L 0.77 tolerated(0.12) benign(0.016) TCGA-37-5819-01 5 15936631 15936631 A G FBXL7 Missense_Mutation p.Q271R 0.25 tolerated(0.86) benign(0.264) TCGA-37-5819-01 5 168216564 168216564 C A SLIT3 Splice_Site p.X360_splice 0.50 TCGA-37-5819-01 5 169463541 169463541 G C DOCK2 Missense_Mutation p.R1216T 0.72 deleterious(0) possibly_damaging(0.855) TCGA-37-5819-01 5 171471959 171471959 G A STK10 Missense_Mutation p.A945V 0.76 tolerated(0.24) benign(0.023) TCGA-37-5819-01 5 17275828 17275828 C A BASP1 Missense_Mutation p.P168Q 0.58 tolerated(0.16) probably_damaging(0.998) TCGA-37-5819-01 5 19473458 19473458 G A CDH18 Silent p.I750I 0.46 TCGA-37-5819-01 5 21975299 21975299 C A CDH12 Nonsense_Mutation p.E143* 0.23 TCGA-37-5819-01 5 21975442 21975442 C A CDH12 Missense_Mutation p.G95V 0.23 deleterious(0) probably_damaging(1) TCGA-37-5819-01 5 26916021 26916021 G A CDH9 Silent p.D80D 0.49 TCGA-37-5819-01 5 33588736 33588736 G T ADAMTS12 Missense_Mutation p.P945T 0.19 deleterious(0) probably_damaging(0.994) TCGA-37-5819-01 5 33637841 33637841 C A ADAMTS12 Nonsense_Mutation p.G577* 0.49 TCGA-37-5819-01 5 37006572 37006572 G T NIPBL Missense_Mutation p.M1323I 0.44 deleterious(0) probably_damaging(0.962) TCGA-37-5819-01 5 39203058 39203058 G A FYB Missense_Mutation p.A12V 0.21 deleterious(0.04) probably_damaging(0.982) TCGA-37-5819-01 5 41000935 41000935 C A MROH2B Nonsense_Mutation p.E1399* 0.33 TCGA-37-5819-01 5 5237172 5237172 C A ADAMTS16 Nonsense_Mutation p.S705* 0.28 TCGA-37-5819-01 5 55396067 55396067 G A ANKRD55 Silent p.H596H 0.08 TCGA-37-5819-01 5 60194177 60194177 C A ERCC8 Nonsense_Mutation p.G257* 0.67 TCGA-37-5819-01 5 61783622 61783622 G C IPO11 Missense_Mutation p.D455H 0.73 tolerated(0.06) possibly_damaging(0.751) TCGA-37-5819-01 5 65288601 65288601 G A ERBB2IP Missense_Mutation p.G19R 0.69 deleterious(0.01) probably_damaging(1) TCGA-37-5819-01 5 65288623 65288623 C A ERBB2IP Missense_Mutation p.T26N 0.07 tolerated(0.11) benign(0.342) TCGA-37-5819-01 5 6600126 6600126 T A NSUN2 Silent p.G739G 0.53 TCGA-37-5819-01 5 74091907 74091907 G T FAM169A Missense_Mutation p.A403E 0.74 tolerated(0.71) benign(0.075) TCGA-37-5819-01 5 79733783 79733783 C T ZFYVE16 Missense_Mutation p.P427S 0.09 tolerated(1) benign(0.025) TCGA-37-5819-01 5 82789635 82789635 G T VCAN Silent p.R211R 0.06 TCGA-37-5819-01 5 82818033 82818033 G T VCAN Missense_Mutation p.G1303V 0.78 tolerated(0.19) benign(0.115) TCGA-37-5819-01 5 82849264 82849264 C A VCAN Missense_Mutation p.A3192E 0.07 deleterious(0) possibly_damaging(0.859) TCGA-37-5819-01 5 82948403 82948403 A G HAPLN1 Missense_Mutation p.L114P 0.09 deleterious(0) probably_damaging(0.999) TCGA-37-5819-01 6 102503425 102503425 C A GRIK2 Nonsense_Mutation p.Y844* 0.67 TCGA-37-5819-01 6 109796671 109796671 C A ZBTB24 Nonsense_Mutation p.E407* 0.08 TCGA-37-5819-01 6 109954162 109954162 T A AK9 Silent p.T406T 0.76 TCGA-37-5819-01 6 110424670 110424670 C T WASF1 Silent p.E268E 0.06 TCGA-37-5819-01 6 111696526 111696527 - T REV3L Frame_Shift_Ins p.M1011Nfs*5 0.27 TCGA-37-5819-01 6 112430603 112430603 A G LAMA4 3'UTR 0.77 TCGA-37-5819-01 6 116441971 116441971 A G COL10A1 Silent p.N436N 0.08 TCGA-37-5819-01 6 116938131 116938131 T C RSPH4A Silent p.S115S 0.11 TCGA-37-5819-01 6 117665372 117665372 C T ROS1 Missense_Mutation p.A1459T 0.68 tolerated(1) benign(0) TCGA-37-5819-01 6 119510840 119510840 T C MAN1A1 Missense_Mutation p.Y512C 0.05 deleterious(0) probably_damaging(1) TCGA-37-5819-01 6 130761936 130761936 T C TMEM200A Silent p.D123D 0.75 TCGA-37-5819-01 6 133100533 133100533 T A SLC18B1 Silent p.P223P 0.75 TCGA-37-5819-01 6 133118167 133118167 C A SLC18B1 Missense_Mutation p.G46V 0.65 tolerated(0.14) benign(0.201) TCGA-37-5819-01 6 135521455 135521455 G T MYB Missense_Mutation p.D618Y 0.70 deleterious(0) probably_damaging(1) TCGA-37-5819-01 6 149699963 149699963 A G TAB2 Silent p.S304S 0.46 TCGA-37-5819-01 6 151152718 151152718 A T PLEKHG1 Missense_Mutation p.H824L 0.05 deleterious(0.04) benign(0.013) TCGA-37-5819-01 6 152332811 152332811 C A ESR1 Missense_Mutation p.H373N 0.71 tolerated(0.11) benign(0.334) TCGA-37-5819-01 6 165715692 165715692 T A C6orf118 Missense_Mutation p.N40I 0.13 deleterious(0) probably_damaging(0.984) TCGA-37-5819-01 6 25914827 25914827 G T SLC17A2 Missense_Mutation p.L379M 0.69 tolerated(0.06) benign(0.18) TCGA-37-5819-01 6 27114553 27114553 G C HIST1H2BK Missense_Mutation p.P9A 0.15 tolerated_low_confidence(0.09) unknown(0) TCGA-37-5819-01 6 29141583 29141583 C A OR2J2 Missense_Mutation p.H57Q 0.67 tolerated(0.07) probably_damaging(0.945) TCGA-37-5819-01 6 29911978 29911978 C A HLA-A Nonsense_Mutation p.Y233* 0.27 TCGA-37-5819-01 6 29912172 29912172 G A HLA-A Nonsense_Mutation p.W298* 0.41 TCGA-37-5819-01 6 31079509 31079509 C G C6orf15 Missense_Mutation p.W209C 0.79 tolerated(0.08) probably_damaging(0.95) TCGA-37-5819-01 6 33632657 33632657 G T ITPR3 Missense_Mutation p.V387F 0.52 deleterious(0) probably_damaging(0.962) TCGA-37-5819-01 6 36475298 36475298 G A STK38 Missense_Mutation p.H251Y 0.70 tolerated(0.17) possibly_damaging(0.625) TCGA-37-5819-01 6 4053064 4053064 G A PRPF4B Missense_Mutation p.R808K 0.67 tolerated(0.56) unknown(0) TCGA-37-5819-01 6 43269340 43269340 C - SLC22A7 Frame_Shift_Del p.E326Nfs*10 0.48 TCGA-37-5819-01 6 54804515 54804515 C T FAM83B Missense_Mutation p.S249L 0.57 deleterious(0) probably_damaging(0.969) TCGA-37-5819-01 6 55739518 55739518 C G BMP5 Missense_Mutation p.R49P 0.74 deleterious(0) possibly_damaging(0.559) TCGA-37-5819-01 6 56880145 56880145 G C BEND6 Missense_Mutation p.E171D 0.65 tolerated_low_confidence(0.1) benign(0.043) TCGA-37-5819-01 6 6152085 6152085 T A F13A1 Missense_Mutation p.D669V 0.64 deleterious(0) probably_damaging(0.964) TCGA-37-5819-01 6 69349182 69349182 G T BAI3 Missense_Mutation p.W205C 0.55 deleterious(0.05) benign(0.338) TCGA-37-5819-01 6 70926698 70926698 C G COL9A1 Missense_Mutation p.G890R 0.79 probably_damaging(1) TCGA-37-5819-01 6 84765036 84765036 A T MRAP2 5'UTR 0.68 TCGA-37-5819-01 6 88344667 88344667 A C ORC3 Silent p.P430P 0.73 TCGA-37-5819-01 6 96054245 96054245 A G MANEA Silent p.A451A 0.10 TCGA-37-5819-01 7 100364685 100364685 C A ZAN Silent p.G1555G 0.64 TCGA-37-5819-01 7 100678893 100678894 - A MUC17 Frame_Shift_Ins p.S1400Kfs*13 0.41 TCGA-37-5819-01 7 100855820 100855820 C G PLOD3 Silent p.L332L 0.52 TCGA-37-5819-01 7 102667932 102667932 T C FBXL13 Silent p.T97T 0.68 TCGA-37-5819-01 7 102669158 102669158 C A FBXL13 Missense_Mutation p.V36F 0.61 tolerated(0.17) benign(0.102) TCGA-37-5819-01 7 107866747 107866747 G - NRCAM Frame_Shift_Del p.P209Qfs*28 0.48 TCGA-37-5819-01 7 116139935 116139935 G T CAV2 Missense_Mutation p.A34S 0.89 tolerated(0.4) benign(0.012) TCGA-37-5819-01 7 122342616 122342616 C - RNF148 Frame_Shift_Del p.N64Ifs*26 0.40 TCGA-37-5819-01 7 123302254 123302254 A G LMOD2 Missense_Mutation p.K205R 0.50 tolerated(0.67) benign(0.005) TCGA-37-5819-01 7 123332787 123332787 C A WASL Missense_Mutation p.A321S 0.77 tolerated(0.65) unknown(0) TCGA-37-5819-01 7 127253810 127253810 C T PAX4 Missense_Mutation p.E180K 0.81 tolerated(0.06) probably_damaging(0.972) TCGA-37-5819-01 7 127892050 127892050 G T LEP 5'UTR 0.13 TCGA-37-5819-01 7 128452222 128452222 C T CCDC136 Silent p.A799A 0.52 TCGA-37-5819-01 7 137570171 137570171 G A CREB3L2 Missense_Mutation p.T374M 0.33 deleterious(0) probably_damaging(0.994) TCGA-37-5819-01 7 140035210 140035210 G A SLC37A3 3'UTR 0.64 TCGA-37-5819-01 7 140301267 140301267 G T DENND2A Missense_Mutation p.P311T 0.67 tolerated(0.24) probably_damaging(0.917) TCGA-37-5819-01 7 141631620 141631620 G C CLEC5A Missense_Mutation p.L118V 0.77 deleterious(0) probably_damaging(0.983) TCGA-37-5819-01 7 142000796 142000796 G A TRBV2 5'UTR 0.59 TCGA-37-5819-01 7 142000841 142000841 C A TRBV2 5'UTR 0.70 TCGA-37-5819-01 7 142326844 142326844 C A TRBV19 Missense_Mutation p.H48N 0.80 deleterious(0.02) benign(0.124) TCGA-37-5819-01 7 142881460 142881460 G T TAS2R39 Missense_Mutation p.G317W 0.86 deleterious(0) probably_damaging(0.999) TCGA-37-5819-01 7 143039500 143039500 G A CLCN1 Missense_Mutation p.R611H 0.29 deleterious(0) probably_damaging(0.96) TCGA-37-5819-01 7 14722261 14722261 G T DGKB Missense_Mutation p.P318T 0.36 tolerated(0.27) benign(0.046) TCGA-37-5819-01 7 147914586 147914586 G T CNTNAP2 Missense_Mutation p.D1073Y 0.65 deleterious(0) possibly_damaging(0.688) TCGA-37-5819-01 7 15599845 15599845 T A AGMO Missense_Mutation p.I60F 0.33 tolerated(0.11) benign(0.003) TCGA-37-5819-01 7 16642048 16642048 C A ANKMY2 Missense_Mutation p.K366N 0.38 deleterious(0.01) possibly_damaging(0.71) TCGA-37-5819-01 7 20691071 20691071 C G ABCB5 Missense_Mutation p.A454G 0.47 tolerated(0.15) benign(0.005) TCGA-37-5819-01 7 23213843 23213843 G T KLHL7 Missense_Mutation p.A563S 0.36 deleterious(0.02) probably_damaging(0.978) TCGA-37-5819-01 7 30830854 30830854 G A FAM188B Missense_Mutation p.R246Q 0.32 tolerated(0.77) benign(0.002) TCGA-37-5819-01 7 35903268 35903268 G T SEPT7 Missense_Mutation p.Q93H 0.28 deleterious(0.05) benign(0.029) TCGA-37-5819-01 7 35903269 35903269 G T SEPT7 Splice_Site p.X93_splice 0.29 TCGA-37-5819-01 7 36662852 36662852 T C AOAH Missense_Mutation p.M176V 0.38 tolerated(0.23) benign(0) TCGA-37-5819-01 7 38725618 38725618 G T FAM183B 5'UTR 0.48 TCGA-37-5819-01 7 44323773 44323773 C T CAMK2B Silent p.E39E 0.15 TCGA-37-5819-01 7 47851492 47851492 C T PKD1L1 Missense_Mutation p.V2502I 0.29 tolerated(0.6) benign(0.004) TCGA-37-5819-01 7 48312761 48312761 G C ABCA13 Missense_Mutation p.K1166N 0.20 benign(0.059) TCGA-37-5819-01 7 48317834 48317834 A G ABCA13 Missense_Mutation p.N2348S 0.39 benign(0.025) TCGA-37-5819-01 7 54617574 54617574 C T VSTM2A Silent p.S115S 0.32 TCGA-37-5819-01 7 55750462 55750462 G T RNU6-389P 5'Flank 0.36 TCGA-37-5819-01 7 55874819 55874819 C A SEPT14 Missense_Mutation p.G317V 0.37 deleterious(0) probably_damaging(0.998) TCGA-37-5819-01 7 55874820 55874820 C A SEPT14 Missense_Mutation p.G317C 0.37 deleterious(0) probably_damaging(1) TCGA-37-5819-01 7 57193725 57193725 C G ZNF479 Missense_Mutation p.V88L 0.35 deleterious(0.05) benign(0.355) TCGA-37-5819-01 7 57528648 57528648 A T ZNF716 Nonsense_Mutation p.K161* 0.36 TCGA-37-5819-01 7 57528690 57528690 C A ZNF716 Missense_Mutation p.H175N 0.25 deleterious(0.05) benign(0.152) TCGA-37-5819-01 7 6370547 6370547 C A FAM220A Missense_Mutation p.G80V 0.50 tolerated(0.43) possibly_damaging(0.509) TCGA-37-5819-01 7 71488657 71488657 G T CALN1 Missense_Mutation p.D162E 0.73 tolerated(0.08) benign(0.083) TCGA-37-5819-01 7 75894703 75894703 C A SRRM3 Silent p.G249G 0.31 TCGA-37-5819-01 7 7645637 7645637 C T MIOS Silent p.N822N 0.53 TCGA-37-5819-01 7 82583557 82583557 C A PCLO Missense_Mutation p.D2238Y 0.65 unknown(0) TCGA-37-5819-01 7 87150161 87150161 G T ABCB1 Missense_Mutation p.T906N 0.73 deleterious(0) probably_damaging(1) TCGA-37-5819-01 7 92763119 92763119 T C SAMD9L Missense_Mutation p.I722M 0.64 deleterious(0) probably_damaging(0.997) TCGA-37-5819-01 7 99654654 99654654 G T ZSCAN21 Missense_Mutation p.A9S 0.74 tolerated(0.23) benign(0.325) TCGA-37-5819-01 8 100589769 100589769 G C VPS13B Missense_Mutation p.D1735H 0.45 deleterious(0) probably_damaging(0.99) TCGA-37-5819-01 8 100831708 100831708 A T VPS13B Missense_Mutation p.K2922M 0.44 deleterious(0.01) possibly_damaging(0.781) TCGA-37-5819-01 8 103312247 103312247 G A UBR5 Silent p.D1029D 0.35 TCGA-37-5819-01 8 104442907 104442907 C A DCAF13 Missense_Mutation p.P383H 0.07 deleterious(0) possibly_damaging(0.846) TCGA-37-5819-01 8 10467053 10467053 C T RP1L1 Missense_Mutation p.V1519M 0.30 unknown(0) TCGA-37-5819-01 8 10470527 10470527 C - RP1L1 Frame_Shift_Del p.E361Rfs*2 0.54 TCGA-37-5819-01 8 104898348 104898348 G A RIMS2 Missense_Mutation p.M507I 0.49 deleterious_low_confidence(0.04) possibly_damaging(0.77) TCGA-37-5819-01 8 113871489 113871489 G A CSMD3 Missense_Mutation p.T547M 0.14 tolerated(0.59) possibly_damaging(0.816) TCGA-37-5819-01 8 114031360 114031360 C T CSMD3 Nonsense_Mutation p.W322* 0.34 TCGA-37-5819-01 8 116631903 116631903 G A TRPS1 Missense_Mutation p.P141L 0.31 deleterious_low_confidence(0) possibly_damaging(0.518) TCGA-37-5819-01 8 120605998 120605998 C T ENPP2 Missense_Mutation p.D411N 0.20 deleterious(0) probably_damaging(0.952) TCGA-37-5819-01 8 120810067 120810067 G C TAF2 Missense_Mutation p.P271R 0.26 deleterious(0) probably_damaging(0.999) TCGA-37-5819-01 8 126445615 126445615 G T TRIB1 Silent p.S139S 0.27 TCGA-37-5819-01 8 133015515 133015515 A - EFR3A Frame_Shift_Del p.L782Wfs*15 0.37 TCGA-37-5819-01 8 133895148 133895148 G T TG Missense_Mutation p.A327S 0.12 tolerated(0.22) benign(0.338) TCGA-37-5819-01 8 134478270 134478270 C A ST3GAL1 Missense_Mutation p.V124L 0.20 possibly_damaging(0.451) TCGA-37-5819-01 8 139890506 139890506 C T COL22A1 Missense_Mutation p.V49M 0.75 unknown(0) TCGA-37-5819-01 8 142458036 142458036 G T SNORD5 3'Flank 0.40 TCGA-37-5819-01 8 142481162 142481162 G - MROH5 3'UTR 0.19 TCGA-37-5819-01 8 143784555 143784555 T C LY6K Silent p.G88G 0.38 TCGA-37-5819-01 8 143999104 143999104 C A CYP11B2 Missense_Mutation p.R51S 0.32 deleterious(0.04) possibly_damaging(0.466) TCGA-37-5819-01 8 21882972 21882972 G T NPM2 Silent p.R28R 0.54 TCGA-37-5819-01 8 22162343 22162343 A G PIWIL2 Missense_Mutation p.I473V 0.79 tolerated(0.49) benign(0.079) TCGA-37-5819-01 8 28413259 28413259 G T FZD3 Missense_Mutation p.V520L 0.75 deleterious(0.01) probably_damaging(0.978) TCGA-37-5819-01 8 30702240 30702240 T G TEX15 Missense_Mutation p.S1432R 0.78 tolerated(0.07) benign(0.173) TCGA-37-5819-01 8 32621881 32621881 G T NRG1 Silent p.L633L 0.87 TCGA-37-5819-01 8 35579850 35579850 G T UNC5D Missense_Mutation p.V414F 0.76 deleterious(0.01) benign(0.148) TCGA-37-5819-01 8 36663799 36663799 G T KCNU1 Missense_Mutation p.D161Y 0.79 deleterious(0) probably_damaging(0.968) TCGA-37-5819-01 8 42591864 42591864 G A CHRNB3 3'UTR 0.12 TCGA-37-5819-01 8 48809844 48809844 G A PRKDC Missense_Mutation p.P1159S 0.53 benign(0.013) TCGA-37-5819-01 8 52322090 52322090 G C PXDNL Silent p.R698R 0.19 TCGA-37-5819-01 8 53079509 53079509 C T ST18 Silent p.P369P 0.18 TCGA-37-5819-01 8 57079512 57079512 C A PLAG1 Nonsense_Mutation p.E265* 0.28 TCGA-37-5819-01 8 61749490 61749490 A T CHD7 Silent p.A1368A 0.26 TCGA-37-5819-01 8 67976621 67976621 C G CSPP1 5'UTR 0.29 TCGA-37-5819-01 8 68430214 68430214 G T CPA6 Silent p.P87P 0.26 TCGA-37-5819-01 8 68984805 68984805 G A PREX2 Silent p.Q523Q 0.27 TCGA-37-5819-01 8 70981441 70981441 G A PRDM14 Silent p.L219L 0.31 TCGA-37-5819-01 8 81599491 81599491 G C ZNF704 Silent p.L176L 0.19 TCGA-37-5819-01 8 86573792 86573792 G - REXO1L1P Frame_Shift_Del p.C646Afs*5 0.13 TCGA-37-5819-01 8 88885208 88885208 G A DCAF4L2 Missense_Mutation p.A331V 0.37 deleterious(0) possibly_damaging(0.844) TCGA-37-5819-01 8 89128908 89128908 G A MMP16 Missense_Mutation p.P304L 0.18 deleterious(0.04) possibly_damaging(0.564) TCGA-37-5819-01 8 95186446 95186446 G T CDH17 Missense_Mutation p.P156Q 0.31 deleterious(0.03) probably_damaging(0.999) TCGA-37-5819-01 8 99045299 99045299 G T MATN2 Missense_Mutation p.D871Y 0.14 deleterious(0) possibly_damaging(0.873) TCGA-37-5819-01 9 107379788 107379788 C A OR13C9 Missense_Mutation p.G233V 0.19 deleterious(0) probably_damaging(0.981) TCGA-37-5819-01 9 108366510 108366510 G T FKTN Silent p.R128R 0.72 TCGA-37-5819-01 9 117103887 117103887 C T AKNA Silent p.A1331A 0.23 TCGA-37-5819-01 9 117846600 117846600 G C TNC Missense_Mutation p.D673E 0.59 tolerated(0.06) possibly_damaging(0.626) TCGA-37-5819-01 9 126783547 126783547 C G LHX2 Silent p.L299L 0.79 TCGA-37-5819-01 9 129458164 129458164 G T LMX1B Silent p.P322P 0.76 TCGA-37-5819-01 9 130293981 130293981 C T FAM129B Missense_Mutation p.M44I 0.78 tolerated(0.23) benign(0.009) TCGA-37-5819-01 9 131568188 131568188 G T TBC1D13 Silent p.L323L 0.67 TCGA-37-5819-01 9 134351810 134351810 A C PRRC2B Missense_Mutation p.S1432R 0.70 deleterious(0) possibly_damaging(0.603) TCGA-37-5819-01 9 135863634 135863634 G T GFI1B Missense_Mutation p.D97Y 0.44 deleterious(0.01) benign(0.075) TCGA-37-5819-01 9 136259504 136259504 A C C9orf96 Missense_Mutation p.I224L 0.10 tolerated(0.64) benign(0.008) TCGA-37-5819-01 9 136305595 136305595 C G ADAMTS13 Silent p.R639R 0.23 TCGA-37-5819-01 9 16552644 16552644 G A BNC2 Missense_Mutation p.R185W 0.44 deleterious(0) probably_damaging(0.999) TCGA-37-5819-01 9 20764907 20764907 G T FOCAD Silent p.L178L 0.29 TCGA-37-5819-01 9 21441038 21441038 T A IFNA1 Missense_Mutation p.S178T 0.62 tolerated(0.06) benign(0.035) TCGA-37-5819-01 9 32631014 32631014 C A TAF1L Missense_Mutation p.D1522Y 0.73 deleterious(0) probably_damaging(0.994) TCGA-37-5819-01 9 33344173 33344173 G T NFX1 Missense_Mutation p.E777D 0.71 tolerated(0.58) benign(0.001) TCGA-37-5819-01 9 37744832 37744832 G C FRMPD1 Missense_Mutation p.D935H 0.41 deleterious(0) probably_damaging(0.997) TCGA-37-5819-01 9 43624942 43624942 G T SPATA31A6 Missense_Mutation p.L1249I 0.10 tolerated(0.14) benign(0.351) TCGA-37-5819-01 9 43630537 43630537 G A SPATA31A6 Silent p.P55P 0.21 TCGA-37-5819-01 9 70177168 70177168 C A FOXD4L5 Silent p.L272L 0.22 TCGA-37-5819-01 9 84249063 84249063 G A TLE1 Missense_Mutation p.H176Y 0.62 tolerated(0.06) benign(0.238) TCGA-37-5819-01 9 894055 894055 T C DMRT1 Missense_Mutation p.C228R 0.81 deleterious(0) benign(0) TCGA-37-5819-01 9 90501662 90501662 A G SPATA31E1 Missense_Mutation p.R754G 0.18 tolerated(0.07) benign(0.144) TCGA-37-5819-01 9 90501901 90501901 G T SPATA31E1 Missense_Mutation p.Q833H 0.77 tolerated(0.15) benign(0.017) TCGA-37-5819-01 9 90502545 90502545 C A SPATA31E1 Missense_Mutation p.T1048N 0.81 tolerated(0.21) possibly_damaging(0.752) TCGA-37-5819-01 9 96407921 96407921 G C PHF2 Missense_Mutation p.V104L 0.73 deleterious(0.03) unknown(0) TCGA-37-5819-01 X 102977157 102977157 G T GLRA4 Missense_Mutation p.A214D 0.79 tolerated(0.34) benign(0.327) TCGA-37-5819-01 X 105190366 105190366 A T NRK Missense_Mutation p.K1422N 0.29 deleterious(0) probably_damaging(0.996) TCGA-37-5819-01 X 107448925 107448925 C A COL4A6 Missense_Mutation p.G205C 0.71 unknown(0) TCGA-37-5819-01 X 107448926 107448926 C A COL4A6 Splice_Site p.X205_splice 0.74 TCGA-37-5819-01 X 108619153 108619153 C T GUCY2F Missense_Mutation p.R1101K 0.72 tolerated(1) benign(0.001) TCGA-37-5819-01 X 127185755 127185755 G A ACTRT1 Missense_Mutation p.A144V 0.33 deleterious(0.04) probably_damaging(0.923) TCGA-37-5819-01 X 130218252 130218252 C G ARHGAP36 Missense_Mutation p.Q207E 0.83 deleterious(0) benign(0.066) TCGA-37-5819-01 X 135432348 135432348 T C GPR112 Silent p.T2161T 0.87 TCGA-37-5819-01 X 138713648 138713648 C A MCF2 Missense_Mutation p.S125I 0.71 deleterious(0) probably_damaging(0.999) TCGA-37-5819-01 X 140969385 140969385 G - MAGEC3 Frame_Shift_Del p.G238Afs*4 0.48 TCGA-37-5819-01 X 140985491 140985491 C A MAGEC3 Missense_Mutation p.S602Y 0.87 tolerated(0.18) probably_damaging(0.95) TCGA-37-5819-01 X 151818973 151818973 C A GABRQ Silent p.V277V 0.88 TCGA-37-5819-01 X 19568202 19568202 C T SH3KBP1 Splice_Site p.X462_splice 0.82 TCGA-37-5819-01 X 2933302 2933302 G T ARSH Missense_Mutation p.W211L 0.67 tolerated(0.28) possibly_damaging(0.734) TCGA-37-5819-01 X 30237315 30237315 T A MAGEB2 Silent p.P206P 0.75 TCGA-37-5819-01 X 3229352 3229352 T G MXRA5 Missense_Mutation p.T2298P 0.76 deleterious(0.01) possibly_damaging(0.864) TCGA-37-5819-01 X 34148669 34148669 C T FAM47A Missense_Mutation p.R576Q 0.76 tolerated(0.69) benign(0.005) TCGA-37-5819-01 X 37670107 37670107 C A CYBB Missense_Mutation p.S550R 0.80 deleterious(0.02) possibly_damaging(0.832) TCGA-37-5819-01 X 38008974 38008974 C A SRPX Missense_Mutation p.C462F 0.93 deleterious(0) probably_damaging(0.997) TCGA-37-5819-01 X 5821361 5821361 G T NLGN4X Missense_Mutation p.A453D 0.77 deleterious(0.01) probably_damaging(1) TCGA-37-5819-01 X 64709195 64709195 G T ZC3H12B Nonsense_Mutation p.E172* 0.76 TCGA-37-5819-01 X 65423209 65423209 C T HEPH Missense_Mutation p.T748I 0.28 tolerated(0.33) benign(0.003) TCGA-37-5819-01 X 77912828 77912828 C A ZCCHC5 Missense_Mutation p.G364C 0.76 deleterious(0) probably_damaging(0.915) TCGA-37-5819-01 X 84363437 84363437 G A SATL1 Nonsense_Mutation p.Q180* 0.77 TCGA-37-5819-01 X 91642888 91642888 C T PCDH11X Missense_Mutation p.P1100L 0.87 deleterious(0) possibly_damaging(0.756) TCGA-37-5819-01 X 99854696 99854696 C A TNMD Silent p.R312R 0.86 TCGA-37-A5EL-01 10 104173595 104173595 G T PSD Missense_Mutation p.P495Q 0.31 tolerated(0.09) benign(0.028) TCGA-37-A5EL-01 10 104173596 104173596 G C PSD Missense_Mutation p.P495A 0.31 tolerated(0.19) benign(0.008) TCGA-37-A5EL-01 10 104828450 104828450 A G CNNM2 Missense_Mutation p.Y713C 0.27 deleterious(0) benign(0.185) TCGA-37-A5EL-01 10 118305612 118305612 C T PNLIP Missense_Mutation p.P3L 0.38 tolerated(0.61) benign(0.001) TCGA-37-A5EL-01 10 120353730 120353730 G A PRLHR Missense_Mutation p.R343C 0.49 deleterious(0) probably_damaging(0.991) TCGA-37-A5EL-01 10 120353731 120353731 G T PRLHR Missense_Mutation p.F342L 0.49 deleterious(0.04) possibly_damaging(0.77) TCGA-37-A5EL-01 10 124380814 124380814 G T DMBT1 Missense_Mutation p.E1713D 0.25 deleterious(0) probably_damaging(0.936) TCGA-37-A5EL-01 10 14981864 14981864 G C DCLRE1C Missense_Mutation p.S84C 0.17 deleterious(0.01) possibly_damaging(0.897) TCGA-37-A5EL-01 10 17199729 17199729 C G TRDMT1 Missense_Mutation p.D200H 0.38 tolerated(0.15) possibly_damaging(0.717) TCGA-37-A5EL-01 10 23408291 23408291 A T MSRB2 Missense_Mutation p.T119S 0.41 tolerated(0.07) benign(0.207) TCGA-37-A5EL-01 10 25231270 25231270 G A PRTFDC1 Silent p.I48I 0.34 TCGA-37-A5EL-01 10 28233286 28233286 G T ARMC4 Silent p.G536G 0.51 TCGA-37-A5EL-01 10 44053426 44053426 T C ZNF239 Silent p.G34G 0.47 TCGA-37-A5EL-01 10 50594624 50594624 C A DRGX Silent p.T147T 0.40 TCGA-37-A5EL-01 10 50732239 50732239 G A ERCC6-PGBD3 Missense_Mutation p.R413W 0.26 tolerated_low_confidence(0.25) benign(0.056) TCGA-37-A5EL-01 10 53457756 53457756 C A CSTF2T Missense_Mutation p.M518I 0.65 tolerated_low_confidence(0.36) unknown(0) TCGA-37-A5EL-01 10 55663009 55663009 T G PCDH15 Missense_Mutation p.R1165S 0.50 deleterious(0.02) benign(0.044) TCGA-37-A5EL-01 10 55663010 55663010 C A PCDH15 Missense_Mutation p.R1165I 0.48 deleterious(0.01) benign(0.222) TCGA-37-A5EL-01 10 55944961 55944961 C - PCDH15 Frame_Shift_Del p.G458Vfs*24 0.21 TCGA-37-A5EL-01 10 5683746 5683746 G A ASB13 Silent p.F232F 0.20 TCGA-37-A5EL-01 10 61005400 61005400 A T PHYHIPL 3'UTR 0.29 TCGA-37-A5EL-01 10 71243572 71243572 C T TSPAN15 Silent p.F74F 0.23 TCGA-37-A5EL-01 10 74890729 74890729 G A NUDT13 3'UTR 0.53 TCGA-37-A5EL-01 10 75407261 75407261 T C SYNPO2L Missense_Mutation p.M717V 0.59 tolerated(0.75) benign(0) TCGA-37-A5EL-01 10 7621903 7621903 G A ITIH5 Silent p.V411V 0.38 TCGA-37-A5EL-01 10 85944529 85944529 C A C10orf99 3'UTR 0.21 TCGA-37-A5EL-01 10 85960371 85960371 G T CDHR1 Silent p.G151G 0.56 TCGA-37-A5EL-01 10 88702264 88702264 T C MMRN2 Silent p.Q759Q 0.52 TCGA-37-A5EL-01 10 96333923 96333923 A G HELLS Silent p.V228V 0.45 TCGA-37-A5EL-01 11 107799372 107799372 C T RAB39A Silent p.H26H 0.30 TCGA-37-A5EL-01 11 113105881 113105881 C A NCAM1 Missense_Mutation p.P656Q 0.50 deleterious(0) probably_damaging(0.993) TCGA-37-A5EL-01 11 114441771 114441771 C T NXPE4 Silent p.V508V 0.33 TCGA-37-A5EL-01 11 118014715 118014715 T A SCN4B Missense_Mutation p.D99V 0.17 deleterious(0.05) possibly_damaging(0.832) TCGA-37-A5EL-01 11 118495703 118495703 G A PHLDB1 Missense_Mutation p.E137K 0.26 deleterious(0) possibly_damaging(0.849) TCGA-37-A5EL-01 11 119027150 119027150 G A ABCG4 Silent p.E266E 0.28 TCGA-37-A5EL-01 11 119216494 119216494 G A MFRP Missense_Mutation p.S139F 0.32 tolerated(0.19) benign(0.044) TCGA-37-A5EL-01 11 123886722 123886722 T A OR10G4 Silent p.T147T 0.49 TCGA-37-A5EL-01 11 125505373 125505373 G T CHEK1 Missense_Mutation p.W221C 0.19 deleterious(0) probably_damaging(1) TCGA-37-A5EL-01 11 1271035 1271035 C G MUC5B Missense_Mutation p.P4309A 0.39 benign(0.001) TCGA-37-A5EL-01 11 1862260 1862260 G T TNNI2 Splice_Site p.X93_splice 0.38 TCGA-37-A5EL-01 11 22301159 22301159 A T ANO5 Nonsense_Mutation p.R864* 0.42 TCGA-37-A5EL-01 11 3061100 3061100 A C CARS Missense_Mutation p.F173V 0.33 tolerated(0.24) benign(0.026) TCGA-37-A5EL-01 11 399057 399057 G T PKP3 Missense_Mutation p.Q378H 0.33 deleterious(0.01) probably_damaging(0.926) TCGA-37-A5EL-01 11 40136243 40136243 C T LRRC4C Missense_Mutation p.V534M 0.39 deleterious(0) probably_damaging(0.997) TCGA-37-A5EL-01 11 40137666 40137666 C T LRRC4C Silent p.K59K 0.54 TCGA-37-A5EL-01 11 40137823 40137823 A T LRRC4C Nonsense_Mutation p.L7* 0.31 TCGA-37-A5EL-01 11 47182893 47182893 C T C11orf49 Intron 0.27 TCGA-37-A5EL-01 11 48238954 48238954 T G OR4B1 Missense_Mutation p.L198W 0.64 deleterious(0) possibly_damaging(0.866) TCGA-37-A5EL-01 11 4903132 4903132 G A OR51T1 Missense_Mutation p.M28I 0.22 deleterious(0.04) possibly_damaging(0.888) TCGA-37-A5EL-01 11 4936455 4936455 C A OR51G2 Missense_Mutation p.G147C 0.45 deleterious(0.02) possibly_damaging(0.67) TCGA-37-A5EL-01 11 49974523 49974523 C G OR4C13 Missense_Mutation p.I183M 0.50 deleterious_low_confidence(0) benign(0.195) TCGA-37-A5EL-01 11 51516034 51516034 C G OR4C46 Silent p.P251P 0.33 TCGA-37-A5EL-01 11 5255394 5255394 C A HBD Missense_Mutation p.D48Y 0.42 deleterious(0.04) possibly_damaging(0.908) TCGA-37-A5EL-01 11 55944634 55944634 A G OR5J2 Missense_Mutation p.I181V 0.47 tolerated(0.36) benign(0.006) TCGA-37-A5EL-01 11 56230158 56230158 C A OR5M9 Silent p.G240G 0.28 TCGA-37-A5EL-01 11 56230356 56230356 G C OR5M9 Missense_Mutation p.H174Q 0.52 deleterious(0.01) probably_damaging(0.998) TCGA-37-A5EL-01 11 59245791 59245791 G A OR4D10 Missense_Mutation p.A297T 0.30 deleterious(0.01) possibly_damaging(0.901) TCGA-37-A5EL-01 11 59480610 59480610 G T OR10V1 Missense_Mutation p.Q237K 0.21 tolerated(0.63) benign(0.001) TCGA-37-A5EL-01 11 61196734 61196734 G A CPSF7 Missense_Mutation p.R35W 0.28 deleterious_low_confidence(0) unknown(0) TCGA-37-A5EL-01 11 61196753 61196753 G A CPSF7 Silent p.F28F 0.36 TCGA-37-A5EL-01 11 62286580 62286580 T A AHNAK Missense_Mutation p.K5103N 0.31 probably_damaging(0.999) TCGA-37-A5EL-01 11 62299332 62299332 C G AHNAK Missense_Mutation p.E853Q 0.14 probably_damaging(0.962) TCGA-37-A5EL-01 11 62334348 62334348 T G EEF1G Missense_Mutation p.M263L 0.30 tolerated(0.84) benign(0) TCGA-37-A5EL-01 11 63978579 63978579 G C FERMT3 Missense_Mutation p.K150N 0.64 tolerated(0.16) benign(0.164) TCGA-37-A5EL-01 11 65374347 65374347 G A MAP3K11 Intron 0.25 TCGA-37-A5EL-01 11 65664341 65664341 C A FOSL1 Missense_Mutation p.R79L 0.23 deleterious(0.03) probably_damaging(0.95) TCGA-37-A5EL-01 11 66191910 66191910 G T NPAS4 Missense_Mutation p.A517S 0.28 tolerated_low_confidence(0.19) benign(0.022) TCGA-37-A5EL-01 11 66333184 66333184 C T CTSF Missense_Mutation p.G335S 0.19 deleterious(0) probably_damaging(1) TCGA-37-A5EL-01 11 6866997 6866997 C T OR10A5 Silent p.L28L 0.35 TCGA-37-A5EL-01 11 6913507 6913507 G T OR2D2 Silent p.T75T 0.58 TCGA-37-A5EL-01 11 7064196 7064196 G T NLRP14 Missense_Mutation p.K313N 0.32 tolerated(0.16) benign(0.093) TCGA-37-A5EL-01 11 72552570 72552570 G A FCHSD2 Missense_Mutation p.P662L 0.50 deleterious(0) possibly_damaging(0.782) TCGA-37-A5EL-01 11 73988139 73988139 C A P4HA3 Missense_Mutation p.R409L 0.42 deleterious(0) possibly_damaging(0.9) TCGA-37-A5EL-01 11 73988149 73988149 G C P4HA3 Missense_Mutation p.L406V 0.29 tolerated(0.34) possibly_damaging(0.835) TCGA-37-A5EL-01 11 88241727 88241727 G T GRM5 3'UTR 0.33 TCGA-37-A5EL-01 11 9199885 9199885 G A DENND5A Missense_Mutation p.P567L 0.35 tolerated(0.1) possibly_damaging(0.771) TCGA-37-A5EL-01 11 92532278 92532278 G T FAT3 Silent p.G2033G 0.47 TCGA-37-A5EL-01 12 101436184 101436184 T A ANO4 Silent p.A329A 0.24 TCGA-37-A5EL-01 12 10147778 10147778 A T CLEC1B Missense_Mutation p.V169D 0.36 tolerated(0.74) benign(0.011) TCGA-37-A5EL-01 12 101880253 101880253 G T SPIC Missense_Mutation p.A151S 0.48 deleterious(0) probably_damaging(1) TCGA-37-A5EL-01 12 109675023 109675033 GGAACTTAACC - ACACB Frame_Shift_Del p.E1501Dfs*3 0.13 TCGA-37-A5EL-01 12 113834994 113834994 A C SDS Missense_Mutation p.L210R 0.54 tolerated(0.15) benign(0.073) TCGA-37-A5EL-01 12 114832699 114832699 C G TBX5 Splice_Site p.X171_splice 0.53 TCGA-37-A5EL-01 12 121615249 121615249 G T P2RX7 Silent p.P396P 0.20 TCGA-37-A5EL-01 12 122295291 122295291 G T HPD Nonsense_Mutation p.Y47* 0.22 TCGA-37-A5EL-01 12 124069136 124069136 G T TMED2 5'UTR 0.40 TCGA-37-A5EL-01 12 125444937 125444939 TCG - DHX37 In_Frame_Del p.F692_E693delinsL 0.10 TCGA-37-A5EL-01 12 125451336 125451336 T A DHX37 Intron 0.49 TCGA-37-A5EL-01 12 125900086 125900086 G A TMEM132B Silent p.A318A 0.22 TCGA-37-A5EL-01 12 133324918 133324918 C G ANKLE2 Splice_Site p.X283_splice 0.22 TCGA-37-A5EL-01 12 18644432 18644432 T C PIK3C2G Silent p.D870D 0.48 TCGA-37-A5EL-01 12 18644485 18644485 A G PIK3C2G Missense_Mutation p.D888G 0.47 deleterious(0.04) benign(0.394) TCGA-37-A5EL-01 12 31540608 31540608 G A DENND5B Nonsense_Mutation p.R1252* 0.28 TCGA-37-A5EL-01 12 3757607 3757607 C T EFCAB4B Intron 0.37 TCGA-37-A5EL-01 12 394751 394751 A T KDM5A Silent p.A1648A 0.37 TCGA-37-A5EL-01 12 39696769 39696769 G A KIF21A Nonsense_Mutation p.Q1577* 0.36 TCGA-37-A5EL-01 12 4920092 4920092 C A KCNA6 Silent p.I295I 0.28 TCGA-37-A5EL-01 12 49436939 49436939 G A KMT2D Missense_Mutation p.P1855L 0.38 probably_damaging(0.972) TCGA-37-A5EL-01 12 49445337 49445337 G C KMT2D Missense_Mutation p.P710R 0.45 unknown(0) TCGA-37-A5EL-01 12 49666563 49666563 G T TUBA1C Missense_Mutation p.Q301H 0.41 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-37-A5EL-01 12 52056621 52056621 C A SCN8A Missense_Mutation p.A7E 0.36 deleterious_low_confidence(0.04) probably_damaging(0.979) TCGA-37-A5EL-01 12 63543999 63543999 G T AVPR1A Silent p.T206T 0.22 TCGA-37-A5EL-01 12 6932963 6932963 C T GPR162 5'UTR 0.09 TCGA-37-A5EL-01 12 70149325 70149325 C A RAB3IP Nonsense_Mutation p.S62* 0.20 TCGA-37-A5EL-01 12 71977953 71977953 C A LGR5 Missense_Mutation p.S721R 0.05 tolerated(0.06) benign(0.014) TCGA-37-A5EL-01 12 86373380 86373380 G A MGAT4C Missense_Mutation p.T375I 0.44 tolerated(0.07) benign(0.002) TCGA-37-A5EL-01 12 8991803 8991803 C A A2ML1 Missense_Mutation p.F355L 0.42 tolerated(0.29) benign(0.007) TCGA-37-A5EL-01 12 9162218 9162218 G T KLRG1 3'UTR 0.50 TCGA-37-A5EL-01 12 9254137 9254137 T G A2M Missense_Mutation p.E467A 0.47 tolerated(0.28) benign(0.014) TCGA-37-A5EL-01 13 103449341 103449341 G A KDELC1 Silent p.G67G 0.39 TCGA-37-A5EL-01 13 114321760 114321760 G A GRK1 Missense_Mutation p.G20D 0.33 tolerated(0.23) possibly_damaging(0.851) TCGA-37-A5EL-01 13 28589821 28589821 T C FLT3 Silent p.K853K 0.47 TCGA-37-A5EL-01 13 38151904 38151904 G A POSTN Missense_Mutation p.P665L 0.34 deleterious(0) probably_damaging(0.999) TCGA-37-A5EL-01 13 38172921 38172921 G T POSTN 5'UTR 0.22 TCGA-37-A5EL-01 13 38211644 38211644 G C TRPC4 Nonsense_Mutation p.S782* 0.15 TCGA-37-A5EL-01 13 43935560 43935560 T C ENOX1 Silent p.P79P 0.54 TCGA-37-A5EL-01 13 46632375 46632375 G T CPB2 Missense_Mutation p.S313Y 0.33 deleterious(0) probably_damaging(0.991) TCGA-37-A5EL-01 13 61987481 61987481 C A PCDH20 Missense_Mutation p.D251Y 0.44 deleterious(0.02) probably_damaging(0.961) TCGA-37-A5EL-01 13 67801218 67801218 G T PCDH9 Missense_Mutation p.T452N 0.29 tolerated(0.74) possibly_damaging(0.843) TCGA-37-A5EL-01 13 70514360 70514360 C T KLHL1 Missense_Mutation p.E276K 0.41 deleterious(0.04) benign(0.445) TCGA-37-A5EL-01 13 88329728 88329728 C T SLITRK5 Silent p.N695N 0.65 TCGA-37-A5EL-01 14 104206526 104206526 A G PPP1R13B Missense_Mutation p.Y743H 0.05 tolerated(0.13) possibly_damaging(0.886) TCGA-37-A5EL-01 14 104492057 104492057 G C TDRD9 Missense_Mutation p.D959H 0.38 deleterious(0.03) benign(0.033) TCGA-37-A5EL-01 14 105355990 105355990 G A CEP170B Missense_Mutation p.R1258Q 0.24 tolerated(0.33) benign(0.009) TCGA-37-A5EL-01 14 105861107 105861111 AACAC - PACS2 3'UTR 0.29 TCGA-37-A5EL-01 14 106331428 106331428 G T IGHJ2 Silent p.T11T 0.55 TCGA-37-A5EL-01 14 106791139 106791139 C G IGHV3-30 Missense_Mutation p.D73H 0.07 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-37-A5EL-01 14 106967298 106967298 C A IGHV1-46 Silent p.G34G 0.31 TCGA-37-A5EL-01 14 19566047 19566047 A C POTEG Missense_Mutation p.Q364P 0.07 deleterious(0.02) probably_damaging(0.968) TCGA-37-A5EL-01 14 20404512 20404512 C G OR4K1 Silent p.S229S 0.33 TCGA-37-A5EL-01 14 22294034 22294034 T C TRAV10 Silent p.Y46Y 0.68 TCGA-37-A5EL-01 14 22459177 22459177 G T TRAV16 Silent p.%3D 0.77 TCGA-37-A5EL-01 14 23871676 23871676 C T MYH6 Missense_Mutation p.E380K 0.24 deleterious(0) benign(0.027) TCGA-37-A5EL-01 14 55326417 55326417 C T GCH1 Missense_Mutation p.G164D 0.24 deleterious(0) probably_damaging(0.998) TCGA-37-A5EL-01 14 58563552 58563552 C A C14orf37 Missense_Mutation p.G660V 0.37 deleterious(0) benign(0.029) TCGA-37-A5EL-01 14 64676670 64676670 G A SYNE2 Missense_Mutation p.R6184Q 0.14 possibly_damaging(0.793) TCGA-37-A5EL-01 14 68215052 68215052 C A ZFYVE26 3'UTR 0.38 TCGA-37-A5EL-01 14 68256144 68256144 T A ZFYVE26 Missense_Mutation p.D976V 0.35 deleterious(0) probably_damaging(0.999) TCGA-37-A5EL-01 14 69256534 69256534 C T ZFP36L1 Missense_Mutation p.D245N 0.43 tolerated(0.28) probably_damaging(0.946) TCGA-37-A5EL-01 14 70518788 70518788 C G SLC8A3 Missense_Mutation p.K650N 0.38 tolerated(0.1) benign(0.015) TCGA-37-A5EL-01 14 70842425 70842425 C T SYNJ2BP Missense_Mutation p.G89S 0.36 deleterious(0) probably_damaging(1) TCGA-37-A5EL-01 14 70924884 70924884 A G ADAM21 Missense_Mutation p.Y223C 0.10 deleterious(0.01) benign(0.017) TCGA-37-A5EL-01 14 73572787 73572787 G A RBM25 Missense_Mutation p.E459K 0.06 unknown(0) TCGA-37-A5EL-01 14 74360561 74360565 AAGCT - ZNF410 Frame_Shift_Del p.A33Rfs*12 0.36 TCGA-37-A5EL-01 14 79117578 79117578 C T NRXN3 Missense_Mutation p.S4L 0.37 deleterious(0) probably_damaging(0.998) TCGA-37-A5EL-01 14 79432573 79432573 C A NRXN3 Missense_Mutation p.N494K 0.32 tolerated(0.59) benign(0.233) TCGA-37-A5EL-01 14 93673414 93673414 G A C14orf142 5'UTR 0.38 TCGA-37-A5EL-01 14 94722912 94722912 G C PPP4R4 Missense_Mutation p.D661H 0.33 deleterious(0) probably_damaging(0.976) TCGA-37-A5EL-01 14 96178700 96178700 G T TCL1A Missense_Mutation p.R52S 0.37 deleterious(0.01) probably_damaging(0.994) TCGA-37-A5EL-01 15 23932420 23932420 C A NDN 5'UTR 0.41 TCGA-37-A5EL-01 15 25456868 25456868 C A SNORD115-22 3'Flank 0.09 TCGA-37-A5EL-01 15 25940175 25940175 G T ATP10A Missense_Mutation p.P960H 0.37 deleterious(0.02) possibly_damaging(0.792) TCGA-37-A5EL-01 15 35044779 35044779 G T GJD2 Missense_Mutation p.A289D 0.78 deleterious(0.04) benign(0.282) TCGA-37-A5EL-01 15 35085455 35085455 G A ACTC1 Missense_Mutation p.R149C 0.64 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-37-A5EL-01 15 48056935 48056935 G T SEMA6D Missense_Mutation p.D400Y 0.78 deleterious(0) probably_damaging(1) TCGA-37-A5EL-01 15 48062903 48062903 G T SEMA6D Missense_Mutation p.A715S 0.18 deleterious(0.04) benign(0.145) TCGA-37-A5EL-01 15 75108973 75108973 G T LMAN1L Missense_Mutation p.D147Y 0.12 deleterious(0) possibly_damaging(0.634) TCGA-37-A5EL-01 15 79069808 79069808 G A ADAMTS7 Missense_Mutation p.S482F 0.92 deleterious(0) possibly_damaging(0.86) TCGA-37-A5EL-01 15 79296322 79296322 G T RASGRF1 Silent p.A773A 0.91 TCGA-37-A5EL-01 15 89825024 89825024 G A FANCI Missense_Mutation p.R514K 0.70 tolerated(0.75) benign(0.175) TCGA-37-A5EL-01 16 11001083 11001083 G C CIITA Silent p.V578V 0.39 TCGA-37-A5EL-01 16 1394128 1394128 C A BAIAP3 Missense_Mutation p.R533S 0.31 deleterious(0) benign(0.296) TCGA-37-A5EL-01 16 1710039 1710039 G T CRAMP1L Silent p.P796P 0.48 TCGA-37-A5EL-01 16 19745024 19745024 C T IQCK Missense_Mutation p.A84V 0.09 tolerated(0.18) benign(0.018) TCGA-37-A5EL-01 16 21156504 21156504 G A DNAH3 Missense_Mutation p.S149L 0.29 tolerated(0.33) benign(0.001) TCGA-37-A5EL-01 16 21698956 21698956 G T OTOA Missense_Mutation p.A208S 0.40 tolerated(0.09) benign(0.121) TCGA-37-A5EL-01 16 28898811 28898811 T A ATP2A1 Silent p.I232I 0.43 TCGA-37-A5EL-01 16 339581 339581 C T AXIN1 Missense_Mutation p.G774D 0.32 deleterious(0.04) benign(0.13) TCGA-37-A5EL-01 16 339582 339582 C G AXIN1 Missense_Mutation p.G774R 0.30 deleterious(0.04) benign(0.393) TCGA-37-A5EL-01 16 4873851 4873851 C G GLYR1 Missense_Mutation p.A199P 0.44 tolerated(0.22) benign(0.101) TCGA-37-A5EL-01 16 49669781 49669781 G T ZNF423 Silent p.G1094G 0.74 TCGA-37-A5EL-01 16 49671936 49671936 G T ZNF423 Missense_Mutation p.A376D 0.29 tolerated(0.07) probably_damaging(0.961) TCGA-37-A5EL-01 16 57918284 57918284 G T CNGB1 Silent p.A1180A 0.30 TCGA-37-A5EL-01 16 65005519 65005519 G A CDH11 Silent p.I535I 0.82 TCGA-37-A5EL-01 16 69711202 69711202 C T NFAT5 Missense_Mutation p.H552Y 0.20 benign(0.337) TCGA-37-A5EL-01 16 81301555 81301555 T A BCMO1 Missense_Mutation p.V221E 0.74 deleterious(0) possibly_damaging(0.597) TCGA-37-A5EL-01 16 89349587 89349587 A T ANKRD11 Missense_Mutation p.D1121E 0.79 probably_damaging(0.99) TCGA-37-A5EL-01 16 9857480 9857480 G T GRIN2A Silent p.P1307P 0.43 TCGA-37-A5EL-01 17 21731078 21731078 A T UBBP4 Missense_Mutation p.E127V 0.65 deleterious(0) possibly_damaging(0.669) TCGA-37-A5EL-01 17 27901663 27901663 C G GIT1 3'UTR 0.14 TCGA-37-A5EL-01 17 36940583 36940583 C A PIP4K2B Silent p.L89L 0.34 TCGA-37-A5EL-01 17 37901161 37901161 A G GRB7 Missense_Mutation p.H335R 0.42 tolerated(0.47) benign(0.137) TCGA-37-A5EL-01 17 40321566 40321566 G C KCNH4 Missense_Mutation p.P507A 0.45 tolerated(0.81) benign(0.003) TCGA-37-A5EL-01 17 40705041 40705041 C A HSD17B1 Missense_Mutation p.S30R 0.42 tolerated(0.72) benign(0.019) TCGA-37-A5EL-01 17 40839962 40839962 C T CNTNAP1 Silent p.I423I 0.41 TCGA-37-A5EL-01 17 41004003 41004003 C T AOC3 Missense_Mutation p.P215S 0.26 deleterious(0.02) probably_damaging(0.996) TCGA-37-A5EL-01 17 45380086 45380086 G C ITGB3 Splice_Site p.X672_splice 0.33 TCGA-37-A5EL-01 17 46103685 46103685 G T COPZ2 3'UTR 0.50 TCGA-37-A5EL-01 17 48704026 48704026 G C CACNA1G Missense_Mutation p.D2350H 0.37 deleterious_low_confidence(0) possibly_damaging(0.548) TCGA-37-A5EL-01 17 5084468 5084468 T C ZNF594 3'UTR 0.84 TCGA-37-A5EL-01 17 51900853 51900853 C A KIF2B Silent p.I153I 0.11 TCGA-37-A5EL-01 17 51900854 51900854 C A KIF2B Missense_Mutation p.Q154K 0.10 deleterious(0) benign(0.005) TCGA-37-A5EL-01 17 54543820 54543820 A T ANKFN1 Missense_Mutation p.Y557F 0.53 tolerated(0.64) possibly_damaging(0.541) TCGA-37-A5EL-01 17 58235082 58235082 C T CA4 Missense_Mutation p.T149I 0.35 deleterious(0.05) benign(0.088) TCGA-37-A5EL-01 17 60464738 60464738 C A EFCAB3 Missense_Mutation p.Q90K 0.33 tolerated(0.23) benign(0.004) TCGA-37-A5EL-01 17 60814284 60814284 T C MARCH10 Silent p.K315K 0.38 TCGA-37-A5EL-01 17 61781013 61781013 G T STRADA Silent p.I414I 0.33 TCGA-37-A5EL-01 17 6606342 6606342 G A SLC13A5 Silent p.T221T 0.25 TCGA-37-A5EL-01 17 66518926 66518926 G T PRKAR1A Missense_Mutation p.Q69H 0.47 tolerated(0.07) benign(0.289) TCGA-37-A5EL-01 17 7189036 7189036 G T SLC2A4 Missense_Mutation p.A379S 0.81 tolerated(0.12) benign(0.216) TCGA-37-A5EL-01 17 72436264 72436264 G A GPRC5C Missense_Mutation p.A162T 0.41 tolerated(0.19) benign(0.024) TCGA-37-A5EL-01 17 73124919 73124919 C T ARMC7 Missense_Mutation p.P128L 0.28 deleterious(0.03) benign(0.007) TCGA-37-A5EL-01 17 7578538 7578538 T A TP53 Missense_Mutation p.N131I 0.82 deleterious(0) probably_damaging(0.999) TCGA-37-A5EL-01 17 79254440 79254440 G A SLC38A10 Missense_Mutation p.P199S 0.27 deleterious(0) probably_damaging(1) TCGA-37-A5EL-01 17 80332441 80332441 C A UTS2R Missense_Mutation p.R81S 0.78 deleterious(0.02) possibly_damaging(0.46) TCGA-37-A5EL-01 17 8731927 8731927 C T PIK3R6 Missense_Mutation p.D424N 0.55 deleterious(0) probably_damaging(0.999) TCGA-37-A5EL-01 18 13056440 13056440 A T CEP192 Missense_Mutation p.N1284I 0.49 deleterious(0) benign(0.088) TCGA-37-A5EL-01 18 14533150 14533150 T A POTEC Missense_Mutation p.N322I 0.04 tolerated(0.23) possibly_damaging(0.509) TCGA-37-A5EL-01 18 14542666 14542666 C A POTEC Missense_Mutation p.M160I 0.46 tolerated(0.13) possibly_damaging(0.708) TCGA-37-A5EL-01 18 21482985 21482985 G C LAMA3 Missense_Mutation p.E2072Q 0.47 benign(0.279) TCGA-37-A5EL-01 18 43329829 43329829 G A SLC14A1 Silent p.K417K 0.53 TCGA-37-A5EL-01 18 72173231 72173231 C A CNDP2 Missense_Mutation p.L118M 0.60 deleterious(0.04) possibly_damaging(0.645) TCGA-37-A5EL-01 19 11959707 11959707 T A ZNF439 5'UTR 0.26 TCGA-37-A5EL-01 19 12816102 12816102 C T TNPO2 Silent p.Q658Q 0.41 TCGA-37-A5EL-01 19 1467210 1467210 C A APC2 Missense_Mutation p.R1304S 0.44 benign(0.14) TCGA-37-A5EL-01 19 15529826 15529826 C G AKAP8L 5'UTR 0.47 TCGA-37-A5EL-01 19 15559079 15559079 G T WIZ Missense_Mutation p.R14S 0.17 deleterious_low_confidence(0.01) benign(0.013) TCGA-37-A5EL-01 19 15590126 15590126 C T PGLYRP2 Silent p.G19G 0.45 TCGA-37-A5EL-01 19 16008258 16008258 G T CYP4F2 Missense_Mutation p.P55Q 0.45 deleterious(0.02) possibly_damaging(0.835) TCGA-37-A5EL-01 19 17886910 17886910 G - FCHO1 Frame_Shift_Del p.A375Qfs*23 0.30 TCGA-37-A5EL-01 19 22155847 22155847 C A ZNF208 Missense_Mutation p.K663N 0.51 deleterious(0.02) possibly_damaging(0.752) TCGA-37-A5EL-01 19 22156823 22156823 T C ZNF208 Missense_Mutation p.E338G 0.36 deleterious(0.02) probably_damaging(0.989) TCGA-37-A5EL-01 19 22847609 22847609 C A ZNF492 Missense_Mutation p.L380I 0.33 deleterious(0.01) probably_damaging(0.934) TCGA-37-A5EL-01 19 23990657 23990657 A G RPSAP58 5'UTR 0.33 TCGA-37-A5EL-01 19 33697103 33697103 G T LRP3 Missense_Mutation p.G476V 0.87 deleterious(0) probably_damaging(1) TCGA-37-A5EL-01 19 37383114 37383114 A G ZNF829 Silent p.F274F 0.81 TCGA-37-A5EL-01 19 38990657 38990657 G T RYR1 Splice_Site p.X2441_splice 0.77 TCGA-37-A5EL-01 19 40485758 40485758 A T PSMC4 Silent p.V236V 0.70 TCGA-37-A5EL-01 19 40899910 40899910 G A PRX Missense_Mutation p.P1450L 0.75 deleterious_low_confidence(0) possibly_damaging(0.859) TCGA-37-A5EL-01 19 4510705 4510705 G A PLIN4 Silent p.F1075F 0.44 TCGA-37-A5EL-01 19 4510709 4510709 G C PLIN4 Missense_Mutation p.P1074R 0.44 deleterious(0.05) benign(0.115) TCGA-37-A5EL-01 19 47111597 47111597 G C CALM3 Missense_Mutation p.G60R 0.62 deleterious_low_confidence(0.05) possibly_damaging(0.516) TCGA-37-A5EL-01 19 48833645 48833645 A G EMP3 Missense_Mutation p.Y137C 0.76 deleterious(0) probably_damaging(0.989) TCGA-37-A5EL-01 19 50157960 50157960 G T SCAF1 Missense_Mutation p.V1151L 0.76 benign(0.198) TCGA-37-A5EL-01 19 53770839 53770839 A G VN1R4 Missense_Mutation p.L27P 0.31 tolerated(0.05) possibly_damaging(0.6) TCGA-37-A5EL-01 19 54215553 54215553 T G MIR517A RNA 0.56 TCGA-37-A5EL-01 19 54318223 54318223 C A NLRP12 Silent p.P103P 0.75 TCGA-37-A5EL-01 19 58384855 58384855 C G ZNF814 Missense_Mutation p.G635R 0.65 tolerated(0.2) probably_damaging(0.999) TCGA-37-A5EL-01 19 8922425 8922425 G A ZNF558 Silent p.T247T 0.11 TCGA-37-A5EL-01 19 9045594 9045594 A T MUC16 Missense_Mutation p.L12013M 0.45 benign(0.063) TCGA-37-A5EL-01 19 9090894 9090894 G T MUC16 Silent p.T307T 0.42 TCGA-37-A5EL-01 19 9453265 9453265 C G ZNF559 Missense_Mutation p.P380A 0.47 tolerated(0.09) probably_damaging(0.914) TCGA-37-A5EL-01 1 144816507 144816507 G A NBPF9 Missense_Mutation p.E213K 0.07 deleterious(0.01) benign(0.217) TCGA-37-A5EL-01 1 151773422 151773422 G A LINGO4 Missense_Mutation p.R587W 0.10 deleterious(0) possibly_damaging(0.898) TCGA-37-A5EL-01 1 152326031 152326031 G C FLG2 Missense_Mutation p.Q1411E 0.33 benign(0.08) TCGA-37-A5EL-01 1 154144697 154144697 G A TPM3 Intron 0.75 TCGA-37-A5EL-01 1 156821855 156821855 C A INSRR Missense_Mutation p.G256C 0.63 deleterious(0.01) benign(0.209) TCGA-37-A5EL-01 1 157739701 157739701 G C FCRL2 Missense_Mutation p.H184D 0.51 tolerated(0.22) benign(0.053) TCGA-37-A5EL-01 1 158450674 158450674 G T OR10R2 Nonstop_Mutation p.*336Lext*? 0.12 TCGA-37-A5EL-01 1 158687187 158687187 C A OR6K3 Missense_Mutation p.C240F 0.50 deleterious(0) probably_damaging(1) TCGA-37-A5EL-01 1 158736313 158736313 G T OR6N1 Silent p.R54R 0.47 TCGA-37-A5EL-01 1 158746702 158746702 C A OR6N2 Missense_Mutation p.A242S 0.09 tolerated(0.05) benign(0.305) TCGA-37-A5EL-01 1 160000591 160000591 G A PIGM Silent p.L313L 0.19 TCGA-37-A5EL-01 1 161989755 161989755 T C OLFML2B Missense_Mutation p.D131G 0.77 deleterious(0) possibly_damaging(0.703) TCGA-37-A5EL-01 1 162257160 162257160 G T NOS1AP Missense_Mutation p.K68N 0.70 deleterious(0) probably_damaging(1) TCGA-37-A5EL-01 1 16525236 16525236 C A ARHGEF19 Missense_Mutation p.W752L 0.80 deleterious(0.01) possibly_damaging(0.886) TCGA-37-A5EL-01 1 167096900 167096900 G T DUSP27 Missense_Mutation p.Q844H 0.14 deleterious(0) possibly_damaging(0.815) TCGA-37-A5EL-01 1 168260609 168260609 C G TBX19 Missense_Mutation p.P139A 0.08 tolerated(0.22) benign(0.003) TCGA-37-A5EL-01 1 169347597 169347597 G - BLZF1 Frame_Shift_Del p.A167Lfs*14 0.41 TCGA-37-A5EL-01 1 169524448 169524448 C G F5 Missense_Mutation p.A364P 0.15 deleterious(0) probably_damaging(0.999) TCGA-37-A5EL-01 1 171755031 171755031 G T METTL13 Missense_Mutation p.R309L 0.19 deleterious(0) probably_damaging(0.995) TCGA-37-A5EL-01 1 176526061 176526061 G T PAPPA2 Silent p.V201V 0.65 TCGA-37-A5EL-01 1 177226233 177226233 G T BRINP2 Intron 0.67 TCGA-37-A5EL-01 1 179460829 179460829 G T AXDND1 Nonsense_Mutation p.E750* 0.18 TCGA-37-A5EL-01 1 183206633 183206633 G C LAMC2 Silent p.G916G 0.32 TCGA-37-A5EL-01 1 184764173 184764173 C A FAM129A Missense_Mutation p.D909Y 0.33 deleterious_low_confidence(0.03) benign(0.073) TCGA-37-A5EL-01 1 186329982 186329982 C A TPR Missense_Mutation p.M338I 0.52 benign(0.019) TCGA-37-A5EL-01 1 193038714 193038714 G C TROVE2 Missense_Mutation p.W177S 0.51 deleterious(0) probably_damaging(0.999) TCGA-37-A5EL-01 1 196227560 196227560 T C KCNT2 Missense_Mutation p.H992R 0.16 tolerated(0.35) benign(0.013) TCGA-37-A5EL-01 1 197390391 197390391 C G CRB1 Missense_Mutation p.S478C 0.28 tolerated(0.11) probably_damaging(0.951) TCGA-37-A5EL-01 1 20442082 20442082 G T PLA2G2D Nonsense_Mutation p.C70* 0.66 TCGA-37-A5EL-01 1 204588448 204588448 G T LRRN2 Missense_Mutation p.L225M 0.49 deleterious(0) probably_damaging(1) TCGA-37-A5EL-01 1 215844524 215844524 C T USH2A Silent p.E4641E 0.21 TCGA-37-A5EL-01 1 221054571 221054571 G T HLX Missense_Mutation p.G210W 0.30 deleterious(0) probably_damaging(0.999) TCGA-37-A5EL-01 1 222721258 222721258 G T HHIPL2 Silent p.P43P 0.42 TCGA-37-A5EL-01 1 228403469 228403469 C T OBSCN Silent p.H678H 0.53 TCGA-37-A5EL-01 1 228509870 228509870 G T OBSCN Missense_Mutation p.V6067L 0.41 benign(0.011) TCGA-37-A5EL-01 1 233511710 233511710 G T MLK4 Missense_Mutation p.R575L 0.43 deleterious(0.04) benign(0.04) TCGA-37-A5EL-01 1 236722320 236722320 T C HEATR1 Missense_Mutation p.Q1629R 0.27 tolerated(0.08) benign(0.007) TCGA-37-A5EL-01 1 236979783 236979783 C T MTR Missense_Mutation p.T235I 0.49 deleterious(0.01) probably_damaging(1) TCGA-37-A5EL-01 1 238053410 238053410 G C ZP4 Missense_Mutation p.P81R 0.19 deleterious(0.01) possibly_damaging(0.786) TCGA-37-A5EL-01 1 240256602 240256602 C A FMN2 Missense_Mutation p.P398H 0.53 unknown(0) TCGA-37-A5EL-01 1 245530514 245530514 G C KIF26B Missense_Mutation p.G282R 0.44 deleterious(0.01) unknown(0) TCGA-37-A5EL-01 1 248058990 248058990 G T OR2W3 Silent p.A34A 0.50 TCGA-37-A5EL-01 1 248263173 248263173 C A OR2L13 Missense_Mutation p.P166T 0.30 deleterious(0.01) possibly_damaging(0.897) TCGA-37-A5EL-01 1 248525317 248525317 C G OR2T4 Missense_Mutation p.F145L 0.24 tolerated(0.14) benign(0.016) TCGA-37-A5EL-01 1 248637031 248637031 G T OR2T3 Missense_Mutation p.R127L 0.15 deleterious(0) benign(0.062) TCGA-37-A5EL-01 1 32085236 32085236 G A HCRTR1 Silent p.P101P 0.11 TCGA-37-A5EL-01 1 32560558 32560558 C G TMEM39B Missense_Mutation p.N367K 0.83 deleterious(0.01) possibly_damaging(0.488) TCGA-37-A5EL-01 1 65830406 65830406 A G DNAJC6 Silent p.L94L 0.73 TCGA-37-A5EL-01 1 67139026 67139027 CT A SGIP1 Frame_Shift_Del p.A208Dfs*11 0.33 TCGA-37-A5EL-01 1 75009669 75009669 G T TNNI3K 3'UTR 0.75 TCGA-37-A5EL-01 1 76313919 76313919 G A MSH4 Silent p.E396E 0.69 TCGA-37-A5EL-01 1 91843704 91843704 G C HFM1 Missense_Mutation p.L425V 0.19 deleterious(0.04) probably_damaging(0.971) TCGA-37-A5EL-01 20 20168605 20168605 G T C20orf26 Missense_Mutation p.D473Y 0.47 deleterious(0) probably_damaging(1) TCGA-37-A5EL-01 20 22562672 22562672 G T FOXA2 Missense_Mutation p.P403H 0.47 tolerated_low_confidence(0.65) benign(0.003) TCGA-37-A5EL-01 20 23029742 23029742 C A THBD Missense_Mutation p.G134C 0.42 deleterious(0) probably_damaging(0.998) TCGA-37-A5EL-01 20 2397994 2397994 G A TGM6 Missense_Mutation p.D485N 0.39 tolerated(0.28) benign(0.011) TCGA-37-A5EL-01 20 25277041 25277041 C A PYGB Missense_Mutation p.N805K 0.27 deleterious(0) probably_damaging(1) TCGA-37-A5EL-01 20 25457425 25457425 C A NINL Silent p.L834L 0.40 TCGA-37-A5EL-01 20 279264 279264 G C ZCCHC3 Missense_Mutation p.S346T 0.21 tolerated(0.05) benign(0.105) TCGA-37-A5EL-01 20 31022757 31022757 C G ASXL1 Missense_Mutation p.Q748E 0.36 deleterious_low_confidence(0.01) benign(0.08) TCGA-37-A5EL-01 20 3843005 3843005 G A MAVS Silent p.L190L 0.06 TCGA-37-A5EL-01 20 42198124 42198124 T C SGK2 Missense_Mutation p.Y170H 0.34 deleterious(0.01) probably_damaging(1) TCGA-37-A5EL-01 20 42788648 42788648 G C JPH2 Missense_Mutation p.A260G 0.29 deleterious(0.01) benign(0.437) TCGA-37-A5EL-01 20 57226981 57226981 C A STX16 5'UTR 0.44 TCGA-37-A5EL-01 20 57767595 57767595 G A ZNF831 Silent p.L507L 0.53 TCGA-37-A5EL-01 20 61572928 61572928 A T GID8 Missense_Mutation p.Q25L 0.38 tolerated(0.2) benign(0.147) TCGA-37-A5EL-01 20 62076183 62076183 G A KCNQ2 Silent p.I173I 0.17 TCGA-37-A5EL-01 20 62326436 62326436 C A RTEL1 Missense_Mutation p.R1145S 0.15 deleterious(0) probably_damaging(0.969) TCGA-37-A5EL-01 21 10863036 10863036 C A IGHV1OR21-1 Missense_Mutation p.A111D 0.12 deleterious(0) probably_damaging(0.996) TCGA-37-A5EL-01 21 10921942 10921942 T C TPTE Missense_Mutation p.T361A 0.12 deleterious(0.01) benign(0.403) TCGA-37-A5EL-01 21 11039266 11039266 C T BAGE2 RNA 0.13 TCGA-37-A5EL-01 22 19124872 19124872 C T DGCR14 Silent p.T333T 0.47 TCGA-37-A5EL-01 22 26272166 26272166 T A MYO18B Missense_Mutation p.L1364Q 0.71 deleterious(0) probably_damaging(0.996) TCGA-37-A5EL-01 22 29661490 29661490 C T RHBDD3 Silent p.E42E 0.31 TCGA-37-A5EL-01 22 37449235 37449235 C T KCTD17 Silent p.D102D 0.47 TCGA-37-A5EL-01 22 50657220 50657220 G C TUBGCP6 Missense_Mutation p.S1578C 0.29 deleterious(0.01) possibly_damaging(0.907) TCGA-37-A5EL-01 2 101186130 101186130 A T PDCL3 Missense_Mutation p.E105D 0.46 deleterious(0) probably_damaging(0.931) TCGA-37-A5EL-01 2 10186400 10186400 T A KLF11 Missense_Mutation p.S56T 0.27 deleterious(0.01) benign(0.355) TCGA-37-A5EL-01 2 106498419 106498419 G A NCK2 Missense_Mutation p.G288R 0.10 deleterious(0) probably_damaging(1) TCGA-37-A5EL-01 2 120414100 120414100 C A PCDP1 3'UTR 0.33 TCGA-37-A5EL-01 2 121107320 121107320 C A INHBB Missense_Mutation p.P365H 0.43 deleterious(0) probably_damaging(0.994) TCGA-37-A5EL-01 2 131904348 131904348 G T PLEKHB2 3'UTR 0.21 TCGA-37-A5EL-01 2 136566237 136566237 T A LCT Missense_Mutation p.E1227V 0.26 tolerated(0.09) possibly_damaging(0.493) TCGA-37-A5EL-01 2 152266964 152266964 C G RIF1 Silent p.L9L 0.33 TCGA-37-A5EL-01 2 158275077 158275077 C T CYTIP Missense_Mutation p.E191K 0.74 deleterious(0) probably_damaging(0.998) TCGA-37-A5EL-01 2 168105740 168105740 G C XIRP2 Missense_Mutation p.G2613A 0.43 benign(0.004) TCGA-37-A5EL-01 2 168725460 168725460 T C B3GALT1 5'UTR 0.23 TCGA-37-A5EL-01 2 169763236 169763236 G A G6PC2 Missense_Mutation p.R168K 0.24 deleterious(0.01) possibly_damaging(0.644) TCGA-37-A5EL-01 2 176948568 176948568 G C EVX2 5'UTR 0.40 TCGA-37-A5EL-01 2 17899411 17899411 C T SMC6 Missense_Mutation p.R342Q 0.65 deleterious(0.01) possibly_damaging(0.712) TCGA-37-A5EL-01 2 179433493 179433493 A T TTN Missense_Mutation p.I25789K 0.31 TCGA-37-A5EL-01 2 179442881 179442881 G T TTN Missense_Mutation p.S22787R 0.21 TCGA-37-A5EL-01 2 179472265 179472265 C T TTN Missense_Mutation p.R17717H 0.23 TCGA-37-A5EL-01 2 179644082 179644082 C A TTN Missense_Mutation p.M1279I 0.36 TCGA-37-A5EL-01 2 183129138 183129138 T C PDE1A Silent p.L35L 0.69 TCGA-37-A5EL-01 2 189839205 189839205 G C COL3A1 5'UTR 0.12 TCGA-37-A5EL-01 2 189851791 189851791 T A COL3A1 Missense_Mutation p.S152T 0.24 unknown(0) TCGA-37-A5EL-01 2 189851792 189851792 C A COL3A1 Missense_Mutation p.S152Y 0.23 unknown(0) TCGA-37-A5EL-01 2 189864272 189864272 G A COL3A1 Missense_Mutation p.G733D 0.29 unknown(0) TCGA-37-A5EL-01 2 189866290 189866290 G T COL3A1 Missense_Mutation p.G789V 0.11 unknown(0) TCGA-37-A5EL-01 2 190541613 190541613 C G ANKAR Missense_Mutation p.Q133E 0.26 deleterious(0.02) benign(0.05) TCGA-37-A5EL-01 2 198540254 198540254 A G RFTN2 5'UTR 0.11 TCGA-37-A5EL-01 2 200137111 200137111 C T SATB2 Silent p.K675K 0.22 TCGA-37-A5EL-01 2 206872011 206872012 - A INO80D Frame_Shift_Ins p.E639* 0.17 TCGA-37-A5EL-01 2 207024647 207024647 C T EEF1B2 5'UTR 0.31 TCGA-37-A5EL-01 2 20870653 20870653 C A GDF7 Missense_Mutation p.T274K 0.42 deleterious(0) benign(0.139) TCGA-37-A5EL-01 2 210558156 210558156 A G MAP2 Missense_Mutation p.Q421R 0.36 deleterious_low_confidence(0.02) possibly_damaging(0.45) TCGA-37-A5EL-01 2 211542834 211542834 T C CPS1 3'UTR 0.38 TCGA-37-A5EL-01 2 217123932 217123932 C A MARCH4 3'UTR 0.19 TCGA-37-A5EL-01 2 218683157 218683157 C A TNS1 Missense_Mutation p.G1196C 0.42 deleterious(0.01) possibly_damaging(0.796) TCGA-37-A5EL-01 2 218999900 218999900 A G CXCR2 Missense_Mutation p.K126E 0.22 deleterious(0) benign(0.253) TCGA-37-A5EL-01 2 227920748 227920748 G A COL4A4 Missense_Mutation p.R877W 0.08 unknown(0) TCGA-37-A5EL-01 2 231359163 231359163 G - SP100 Frame_Shift_Del p.G545Vfs*15 0.12 TCGA-37-A5EL-01 2 233001324 233001324 T A DIS3L2 Missense_Mutation p.L282H 0.28 tolerated(0.09) benign(0.182) TCGA-37-A5EL-01 2 24245764 24245764 G A MFSD2B Missense_Mutation p.G351R 0.58 deleterious(0) probably_damaging(0.998) TCGA-37-A5EL-01 2 27804318 27804318 G T C2orf16 Nonsense_Mutation p.E1627* 0.64 TCGA-37-A5EL-01 2 37113905 37113905 G C STRN Silent p.L332L 0.20 TCGA-37-A5EL-01 2 40656084 40656084 G A SLC8A1 Missense_Mutation p.T446I 0.26 deleterious(0) probably_damaging(1) TCGA-37-A5EL-01 2 50850581 50850581 C T NRXN1 Silent p.L368L 0.10 TCGA-37-A5EL-01 2 55277415 55277415 G A RTN4 Missense_Mutation p.P8S 0.15 tolerated_low_confidence(0.26) unknown(0) TCGA-37-A5EL-01 2 56103853 56103853 T C EFEMP1 Missense_Mutation p.N262S 0.34 tolerated(0.83) benign(0.022) TCGA-37-A5EL-01 2 68385219 68385219 G T PNO1 Missense_Mutation p.E51D 0.30 tolerated(0.2) benign(0.004) TCGA-37-A5EL-01 2 70917922 70917922 C - ADD2 Frame_Shift_Del p.C282Sfs*6 0.21 TCGA-37-A5EL-01 2 71791283 71791283 C T DYSF Silent p.S835S 0.48 TCGA-37-A5EL-01 2 74761022 74761022 G T LOXL3 Missense_Mutation p.H725Q 0.39 tolerated(0.06) probably_damaging(0.987) TCGA-37-A5EL-01 2 79384276 79384276 A T REG3A 3'UTR 0.29 TCGA-37-A5EL-01 2 80529547 80529547 C A LRRTM1 Silent p.T466T 0.42 TCGA-37-A5EL-01 2 80529548 80529548 G T LRRTM1 Missense_Mutation p.T466K 0.43 tolerated(0.93) benign(0.097) TCGA-37-A5EL-01 2 80530977 80530977 G T LRRTM1 5'UTR 0.38 TCGA-37-A5EL-01 2 8870754 8870754 C T KIDINS220 3'UTR 0.40 TCGA-37-A5EL-01 2 90139090 90139090 C A IGKV1D-16 5'UTR 0.18 TCGA-37-A5EL-01 2 90229314 90229314 G C IGKV1D-42 Missense_Mutation p.C45S 0.38 deleterious(0) probably_damaging(0.999) TCGA-37-A5EL-01 2 97271113 97271113 G A KANSL3 Missense_Mutation p.S626F 0.39 deleterious_low_confidence(0) possibly_damaging(0.643) TCGA-37-A5EL-01 2 97531015 97531015 G A SEMA4C Missense_Mutation p.T187M 0.37 deleterious(0.01) probably_damaging(1) TCGA-37-A5EL-01 2 97531017 97531017 G A SEMA4C Silent p.G186G 0.36 TCGA-37-A5EL-01 2 98853109 98853109 T C VWA3B Silent p.D863D 0.45 TCGA-37-A5EL-01 3 101476502 101476502 G - CEP97 Frame_Shift_Del p.V352Lfs*3 0.26 TCGA-37-A5EL-01 3 107766080 107766080 G A CD47 3'UTR 0.53 TCGA-37-A5EL-01 3 114069196 114069196 G A ZBTB20 Missense_Mutation p.P577S 0.16 tolerated(0.32) benign(0.225) TCGA-37-A5EL-01 3 120461338 120461338 C A RABL3 Missense_Mutation p.R6L 0.30 deleterious(0) possibly_damaging(0.83) TCGA-37-A5EL-01 3 129196862 129196862 G T IFT122 Missense_Mutation p.R435L 0.32 deleterious(0) probably_damaging(0.979) TCGA-37-A5EL-01 3 129196873 129196873 A G IFT122 Missense_Mutation p.K439E 0.26 deleterious(0) benign(0.341) TCGA-37-A5EL-01 3 1363373 1363373 C A CNTN6 Missense_Mutation p.S267R 0.78 tolerated(0.69) benign(0.261) TCGA-37-A5EL-01 3 137881159 137881159 C A DBR1 Nonsense_Mutation p.E403* 0.28 TCGA-37-A5EL-01 3 142751657 142751657 G T U2SURP Nonsense_Mutation p.G548* 0.19 TCGA-37-A5EL-01 3 151161127 151161127 G T IGSF10 Missense_Mutation p.P1870T 0.74 deleterious(0) probably_damaging(0.999) TCGA-37-A5EL-01 3 155206534 155206534 C T PLCH1 Silent p.L806L 0.13 TCGA-37-A5EL-01 3 155208653 155208653 A G PLCH1 Missense_Mutation p.I759T 0.12 deleterious(0) probably_damaging(0.997) TCGA-37-A5EL-01 3 160119789 160119789 G C SMC4 Missense_Mutation p.E76Q 0.08 deleterious(0.04) benign(0.094) TCGA-37-A5EL-01 3 164732941 164732941 C T SI Nonsense_Mutation p.W1323* 0.06 TCGA-37-A5EL-01 3 164748656 164748656 C A SI Splice_Site p.X913_splice 0.12 TCGA-37-A5EL-01 3 186038316 186038316 C G DGKG 5'UTR 0.15 TCGA-37-A5EL-01 3 186445065 186445065 G A KNG1 Missense_Mutation p.V202M 0.79 tolerated(0.11) benign(0.285) TCGA-37-A5EL-01 3 191178973 191178973 G A PYDC2 Missense_Mutation p.D8N 0.09 tolerated(0.39) benign(0.094) TCGA-37-A5EL-01 3 194062571 194062571 G T CPN2 Missense_Mutation p.H287Q 0.16 tolerated(0.5) benign(0.011) TCGA-37-A5EL-01 3 196792254 196792254 C G DLG1 Missense_Mutation p.E789Q 0.11 deleterious(0.03) probably_damaging(0.998) TCGA-37-A5EL-01 3 38048552 38048552 A C VILL 3'UTR 0.13 TCGA-37-A5EL-01 3 430949 430949 G T CHL1 Missense_Mutation p.M754I 0.89 tolerated(1) benign(0.373) TCGA-37-A5EL-01 3 430950 430950 G T CHL1 Nonsense_Mutation p.E755* 0.89 TCGA-37-A5EL-01 3 4508903 4508903 C A SUMF1 Silent p.V9V 0.65 TCGA-37-A5EL-01 3 50645269 50645269 C T CISH Silent p.P199P 0.76 TCGA-37-A5EL-01 3 58552386 58552386 G T FAM107A Missense_Mutation p.P122T 0.70 deleterious(0) probably_damaging(0.998) TCGA-37-A5EL-01 3 7188164 7188164 C T GRM7 Missense_Mutation p.T182M 0.73 deleterious(0) probably_damaging(0.999) TCGA-37-A5EL-01 3 7620139 7620139 C G GRM7 Missense_Mutation p.R516G 0.58 tolerated(0.46) benign(0.066) TCGA-37-A5EL-01 3 78735036 78735036 G A ROBO1 Missense_Mutation p.S401L 0.62 deleterious(0) benign(0.012) TCGA-37-A5EL-01 3 98073642 98073642 A C OR5K4 Silent p.A315A 0.58 TCGA-37-A5EL-01 3 98241846 98241846 C A CLDND1 5'UTR 0.73 TCGA-37-A5EL-01 4 111553580 111553580 C A PITX2 Missense_Mutation p.V35F 0.79 tolerated(0.16) benign(0.008) TCGA-37-A5EL-01 4 115997977 115997977 G A NDST4 Silent p.D72D 0.23 TCGA-37-A5EL-01 4 134072200 134072200 G T PCDH10 Missense_Mutation p.G302V 0.64 tolerated(0.05) benign(0.438) TCGA-37-A5EL-01 4 141847133 141847133 G T RNF150 Missense_Mutation p.P329T 0.59 tolerated(0.35) benign(0.298) TCGA-37-A5EL-01 4 155156081 155156081 C A DCHS2 Missense_Mutation p.E2786D 0.68 deleterious(0.02) probably_damaging(0.938) TCGA-37-A5EL-01 4 155158302 155158302 A T DCHS2 Missense_Mutation p.F2046Y 0.83 tolerated(0.08) benign(0.272) TCGA-37-A5EL-01 4 187518207 187518207 C A FAT1 Nonsense_Mutation p.E4163* 0.85 TCGA-37-A5EL-01 4 188924849 188924849 C A ZFP42 Silent p.I296I 0.65 TCGA-37-A5EL-01 4 20521051 20521051 G T SLIT2 Nonsense_Mutation p.E369* 0.26 TCGA-37-A5EL-01 4 25849369 25849369 G A SEL1L3 Missense_Mutation p.R94C 0.29 tolerated(0.2) possibly_damaging(0.855) TCGA-37-A5EL-01 4 42581902 42581902 G C ATP8A1 Missense_Mutation p.L310V 0.43 tolerated(0.17) probably_damaging(0.994) TCGA-37-A5EL-01 4 47428048 47428048 T C GABRB1 3'UTR 0.85 TCGA-37-A5EL-01 4 57366713 57366713 A G SRP72 Missense_Mutation p.K564E 0.83 deleterious(0) probably_damaging(0.973) TCGA-37-A5EL-01 4 62758384 62758384 C A LPHN3 Silent p.T429T 0.71 TCGA-37-A5EL-01 4 72649720 72649720 C T GC Missense_Mutation p.V25I 0.73 tolerated(0.26) benign(0.003) TCGA-37-A5EL-01 4 73414197 73414197 G A ADAMTS3 Silent p.L168L 0.28 TCGA-37-A5EL-01 4 80328372 80328372 A G GK2 Missense_Mutation p.V328A 0.75 tolerated(1) benign(0.019) TCGA-37-A5EL-01 5 110428177 110428177 G T WDR36 Missense_Mutation p.R64L 0.71 tolerated(0.07) benign(0.038) TCGA-37-A5EL-01 5 114473311 114473311 A G TRIM36 Silent p.C290C 0.75 TCGA-37-A5EL-01 5 118970427 118970427 G T FAM170A Missense_Mutation p.R328S 0.71 deleterious_low_confidence(0) benign(0.029) TCGA-37-A5EL-01 5 127595480 127595480 G C FBN2 Silent p.P2802P 0.34 TCGA-37-A5EL-01 5 127680187 127680187 T G FBN2 Missense_Mutation p.K1078T 0.70 tolerated(0.09) probably_damaging(0.942) TCGA-37-A5EL-01 5 136834131 136834131 T A SPOCK1 Silent p.L39L 0.50 TCGA-37-A5EL-01 5 13867988 13867988 G C DNAH5 Silent p.V1316V 0.44 TCGA-37-A5EL-01 5 140174820 140174820 G T PCDHA2 Missense_Mutation p.D91Y 0.68 deleterious_low_confidence(0) probably_damaging(1) TCGA-37-A5EL-01 5 140215861 140215861 C - PCDHA7 Frame_Shift_Del p.S632Afs*6 0.38 TCGA-37-A5EL-01 5 140216229 140216229 G T PCDHA7 Missense_Mutation p.R754M 0.64 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-37-A5EL-01 5 140530917 140530917 A G PCDHB6 Missense_Mutation p.E360G 0.81 deleterious(0.02) benign(0.018) TCGA-37-A5EL-01 5 140725577 140725577 G T PCDHGA3 Silent p.T659T 0.60 TCGA-37-A5EL-01 5 140741225 140741226 GC - PCDHGB2 Frame_Shift_Del p.Q510Efs*13 0.47 TCGA-37-A5EL-01 5 140797670 140797670 G T PCDHGB7 Missense_Mutation p.G82W 0.77 deleterious(0) probably_damaging(1) TCGA-37-A5EL-01 5 154191082 154191082 A G LARP1 Missense_Mutation p.Y911C 0.73 deleterious(0) probably_damaging(0.999) TCGA-37-A5EL-01 5 156752518 156752518 C A CYFIP2 Silent p.S592S 0.62 TCGA-37-A5EL-01 5 161119086 161119086 A T GABRA6 Silent p.A322A 0.74 TCGA-37-A5EL-01 5 19571740 19571740 C A CDH18 Missense_Mutation p.V401F 0.33 tolerated(0.27) benign(0.277) TCGA-37-A5EL-01 5 2749508 2749508 C - IRX2 Frame_Shift_Del p.A215Qfs*69 0.25 TCGA-37-A5EL-01 5 33577250 33577250 C A ADAMTS12 Missense_Mutation p.G961C 0.35 deleterious(0) probably_damaging(0.999) TCGA-37-A5EL-01 5 36038117 36038117 A T UGT3A2 Silent p.A359A 0.37 TCGA-37-A5EL-01 5 49707164 49707164 C A EMB Missense_Mutation p.V84L 0.16 tolerated(0.18) benign(0.024) TCGA-37-A5EL-01 5 89979931 89979931 G C GPR98 Missense_Mutation p.D2065H 0.11 probably_damaging(0.998) TCGA-37-A5EL-01 6 142409747 142409747 C T NMBR Missense_Mutation p.E17K 0.39 tolerated(0.79) benign(0.005) TCGA-37-A5EL-01 6 152542156 152542156 C G SYNE1 Missense_Mutation p.A7228P 0.59 possibly_damaging(0.864) TCGA-37-A5EL-01 6 157522571 157522571 G A ARID1B Missense_Mutation p.A1615T 0.62 probably_damaging(0.996) TCGA-37-A5EL-01 6 161139331 161139331 C A PLG Missense_Mutation p.P265T 0.33 tolerated(0.06) benign(0.016) TCGA-37-A5EL-01 6 163956089 163956089 G C QKI Missense_Mutation p.A160P 0.78 deleterious(0.01) possibly_damaging(0.533) TCGA-37-A5EL-01 6 26184119 26184119 C A HIST1H2BE Silent p.R32R 0.77 TCGA-37-A5EL-01 6 2678567 2678567 A T MYLK4 Silent p.A309A 0.67 TCGA-37-A5EL-01 6 27114374 27114374 G T HIST1H2BK Missense_Mutation p.N68K 0.65 deleterious_low_confidence(0.02) possibly_damaging(0.463) TCGA-37-A5EL-01 6 29429505 29429505 G T OR2H1 5'UTR 0.76 TCGA-37-A5EL-01 6 32557463 32557463 C G HLA-DRB1 Silent p.L19L 0.10 TCGA-37-A5EL-01 6 46111387 46111387 G T ENPP4 3'UTR 0.12 TCGA-37-A5EL-01 6 51882413 51882413 G A PKHD1 Silent p.L1799L 0.10 TCGA-37-A5EL-01 6 76715128 76715128 A G IMPG1 Silent p.H337H 0.31 TCGA-37-A5EL-01 6 84269917 84269917 C T SNAP91 Missense_Mutation p.G846E 0.40 tolerated(0.06) probably_damaging(0.997) TCGA-37-A5EL-01 6 84566969 84566969 G T RIPPLY2 Missense_Mutation p.W83L 0.50 deleterious(0) probably_damaging(0.991) TCGA-37-A5EL-01 6 90572410 90572410 G C CASP8AP2 RNA 0.26 TCGA-37-A5EL-01 7 100606770 100606770 C T MUC3A Silent p.F620F 0.46 TCGA-37-A5EL-01 7 100773802 100773802 G C SERPINE1 Silent p.R124R 0.31 TCGA-37-A5EL-01 7 102257092 102257092 C T RASA4 Silent p.K15K 0.07 TCGA-37-A5EL-01 7 103207092 103207092 G A RELN Missense_Mutation p.A1568V 0.48 deleterious(0) possibly_damaging(0.603) TCGA-37-A5EL-01 7 103969240 103969240 G T LHFPL3 Missense_Mutation p.A5S 0.70 tolerated_low_confidence(0.28) possibly_damaging(0.709) TCGA-37-A5EL-01 7 106508252 106508252 C G PIK3CG Missense_Mutation p.S82R 0.62 tolerated(0.09) benign(0.141) TCGA-37-A5EL-01 7 116869925 116869925 C T ST7 Silent p.S482S 0.07 TCGA-37-A5EL-01 7 127231141 127231141 C G ARF5 Missense_Mutation p.T152R 0.59 tolerated_low_confidence(0.52) benign(0.012) TCGA-37-A5EL-01 7 127669309 127669309 G A LRRC4 Missense_Mutation p.T462M 0.59 tolerated(0.28) benign(0.011) TCGA-37-A5EL-01 7 129357148 129357148 G A NRF1 Silent p.L385L 0.60 TCGA-37-A5EL-01 7 131925826 131925826 T G PLXNA4 Missense_Mutation p.T535P 0.67 tolerated(0.13) benign(0.321) TCGA-37-A5EL-01 7 142626561 142626561 G T TRPV5 Missense_Mutation p.T150N 0.34 tolerated(0.27) benign(0.222) TCGA-37-A5EL-01 7 143175199 143175199 G T TAS2R41 Silent p.G78G 0.51 TCGA-37-A5EL-01 7 143771668 143771668 A G OR2A25 Missense_Mutation p.Y119C 0.53 deleterious(0.02) benign(0.12) TCGA-37-A5EL-01 7 147336344 147336344 T A CNTNAP2 Missense_Mutation p.C682S 0.33 deleterious(0) probably_damaging(0.997) TCGA-37-A5EL-01 7 150217035 150217035 C A GIMAP7 5'UTR 0.22 TCGA-37-A5EL-01 7 150697640 150697640 G A NOS3 Missense_Mutation p.D396N 0.22 deleterious(0) probably_damaging(0.998) TCGA-37-A5EL-01 7 21698483 21698483 C A DNAH11 Missense_Mutation p.A1726D 0.83 possibly_damaging(0.739) TCGA-37-A5EL-01 7 31683165 31683165 G T CCDC129 Silent p.G753G 0.25 TCGA-37-A5EL-01 7 33545158 33545158 G - BBS9 Frame_Shift_Del p.V734* 0.23 TCGA-37-A5EL-01 7 43532696 43532696 G T HECW1 Missense_Mutation p.K1118N 0.26 deleterious(0.02) probably_damaging(0.993) TCGA-37-A5EL-01 7 56022912 56022912 G T MRPS17 3'UTR 0.17 TCGA-37-A5EL-01 7 57528486 57528486 C A ZNF716 Missense_Mutation p.L107I 0.34 deleterious(0) probably_damaging(0.996) TCGA-37-A5EL-01 7 7420490 7420490 C T COL28A1 Missense_Mutation p.E737K 0.06 deleterious(0.01) benign(0.217) TCGA-37-A5EL-01 7 77756537 77756537 G T MAGI2 Missense_Mutation p.L1134M 0.82 deleterious(0.02) possibly_damaging(0.857) TCGA-37-A5EL-01 7 78119125 78119125 G T MAGI2 Missense_Mutation p.P333Q 0.85 deleterious(0) probably_damaging(1) TCGA-37-A5EL-01 7 88389311 88389311 C G ZNF804B Missense_Mutation p.I7M 0.29 deleterious(0) probably_damaging(0.995) TCGA-37-A5EL-01 7 92098758 92098758 G T ERVW-1 Missense_Mutation p.P313H 0.51 tolerated(0.58) possibly_damaging(0.874) TCGA-37-A5EL-01 7 92098759 92098759 G T ERVW-1 Missense_Mutation p.P313T 0.52 tolerated(0.43) benign(0.392) TCGA-37-A5EL-01 7 94029594 94029594 C A COL1A2 Silent p.L73L 0.38 TCGA-37-A5EL-01 7 94827668 94827668 A T PPP1R9A Missense_Mutation p.I588F 0.31 deleterious(0) probably_damaging(0.997) TCGA-37-A5EL-01 8 104419995 104419995 G A SLC25A32 Silent p.L58L 0.38 TCGA-37-A5EL-01 8 105509645 105509645 C - LRP12 Frame_Shift_Del p.E379Kfs*109 0.24 TCGA-37-A5EL-01 8 106801059 106801059 G T ZFPM2 Nonsense_Mutation p.E216* 0.48 TCGA-37-A5EL-01 8 120744063 120744063 G A TAF2 3'UTR 0.27 TCGA-37-A5EL-01 8 139165090 139165090 G T FAM135B Missense_Mutation p.P543Q 0.19 tolerated(0.26) possibly_damaging(0.494) TCGA-37-A5EL-01 8 139620227 139620227 C A COL22A1 Missense_Mutation p.K1328N 0.08 unknown(0) TCGA-37-A5EL-01 8 142487536 142487536 C T MROH5 3'UTR 0.31 TCGA-37-A5EL-01 8 143763464 143763464 G A PSCA Missense_Mutation p.G87R 0.51 tolerated(0.22) unknown(0) TCGA-37-A5EL-01 8 144803787 144803787 G C MAPK15 Missense_Mutation p.G425R 0.13 tolerated(0.12) benign(0.085) TCGA-37-A5EL-01 8 145584130 145584130 C T SLC52A2 Silent p.F326F 0.45 TCGA-37-A5EL-01 8 24813727 24813727 G A CTD-2168K21.2 5'Flank 0.15 TCGA-37-A5EL-01 8 26627728 26627728 G T ADRA1A Intron 0.48 TCGA-37-A5EL-01 8 27779263 27779263 G C SCARA5 Missense_Mutation p.D247E 0.58 tolerated(0.06) probably_damaging(0.996) TCGA-37-A5EL-01 8 35631917 35631917 G C UNC5D Missense_Mutation p.R860P 0.50 deleterious(0) probably_damaging(1) TCGA-37-A5EL-01 8 37691236 37691236 C A GPR124 Missense_Mutation p.L443M 0.36 deleterious(0.01) probably_damaging(0.985) TCGA-37-A5EL-01 8 38124780 38124780 C A PPAPDC1B Intron 0.10 TCGA-37-A5EL-01 8 38851085 38851085 C G TM2D2 Missense_Mutation p.R137P 0.36 deleterious(0) probably_damaging(0.935) TCGA-37-A5EL-01 8 41571712 41571712 G T ANK1 Missense_Mutation p.L621M 0.32 deleterious(0) probably_damaging(0.99) TCGA-37-A5EL-01 8 444561 444561 T C TDRP Missense_Mutation p.T49A 0.13 deleterious(0.04) benign(0.057) TCGA-37-A5EL-01 8 48777149 48777149 C G PRKDC Missense_Mutation p.A1846P 0.50 possibly_damaging(0.888) TCGA-37-A5EL-01 8 61655438 61655438 G T CHD7 Missense_Mutation p.V483F 0.33 benign(0.403) TCGA-37-A5EL-01 8 62289265 62289265 G A CLVS1 Nonsense_Mutation p.W186* 0.47 TCGA-37-A5EL-01 8 64098899 64098899 G C YTHDF3 Silent p.G109G 0.42 TCGA-37-A5EL-01 8 72754901 72754901 C T MSC Missense_Mutation p.A206T 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-37-A5EL-01 8 72958813 72958813 G A TRPA1 Missense_Mutation p.P666S 0.35 deleterious(0.02) probably_damaging(0.999) TCGA-37-A5EL-01 8 85097231 85097231 G A RALYL 5'UTR 0.34 TCGA-37-A5EL-01 8 85441712 85441712 C T RALYL Silent p.S65S 0.24 TCGA-37-A5EL-01 8 8748624 8748624 G T MFHAS1 Silent p.R649R 0.46 TCGA-37-A5EL-01 8 98787978 98787978 C A LAPTM4B Missense_Mutation p.T5N 0.52 deleterious_low_confidence(0.02) benign(0.053) TCGA-37-A5EL-01 9 109689219 109689219 C G ZNF462 Missense_Mutation p.P1009R 0.51 benign(0.296) TCGA-37-A5EL-01 9 116093365 116093365 G A WDR31 Nonsense_Mutation p.Q50* 0.10 TCGA-37-A5EL-01 9 116750806 116750806 G T ZNF618 Missense_Mutation p.V95L 0.53 tolerated_low_confidence(0.12) benign(0.002) TCGA-37-A5EL-01 9 117109022 117109022 C T AKNA Silent p.E1147E 0.87 TCGA-37-A5EL-01 9 130473770 130473770 C A C9orf117 Missense_Mutation p.Q284K 0.44 tolerated(0.33) benign(0.115) TCGA-37-A5EL-01 9 130980545 130980545 G T DNM1 Missense_Mutation p.R66L 0.26 deleterious(0) probably_damaging(1) TCGA-37-A5EL-01 9 131371248 131371248 C G SPTAN1 Silent p.V1529V 0.04 TCGA-37-A5EL-01 9 131730997 131730997 G C NUP188 Splice_Site p.X266_splice 0.25 TCGA-37-A5EL-01 9 140481434 140481434 G A ZMYND19 Missense_Mutation p.T115I 0.94 tolerated(0.32) benign(0) TCGA-37-A5EL-01 9 21974693 21974693 C - CDKN2A Frame_Shift_Del p.G45Vfs*8 0.52 TCGA-37-A5EL-01 9 79319983 79319983 C A PRUNE2 Nonsense_Mutation p.E2403* 0.62 TCGA-37-A5EL-01 9 84531582 84531582 T A SPATA31D5P RNA 0.27 TCGA-37-A5EL-01 9 90343499 90343499 G T CTSL Splice_Site p.X133_splice 0.27 TCGA-37-A5EL-01 9 95077123 95077123 G A NOL8 Missense_Mutation p.S595F 0.32 tolerated(0.38) benign(0.022) TCGA-37-A5EL-01 9 97063663 97063663 C - ZNF169 3'UTR 0.50 TCGA-37-A5EL-01 X 104464093 104464093 C - TEX13A Frame_Shift_Del p.Q262Rfs*91 0.50 TCGA-37-A5EL-01 X 139038729 139038729 T C CXorf66 Missense_Mutation p.I138V 0.83 tolerated(0.62) benign(0.274) TCGA-37-A5EL-01 X 144337222 144337222 C A SPANXN1 Missense_Mutation p.P36H 0.86 deleterious(0) possibly_damaging(0.853) TCGA-37-A5EL-01 X 151092303 151092303 C T MAGEA4 Missense_Mutation p.A56V 0.07 tolerated(0.07) benign(0.11) TCGA-37-A5EL-01 X 153199407 153199407 G C NAA10 Silent p.V56V 0.05 TCGA-37-A5EL-01 X 18970620 18970620 T A PHKA2 Missense_Mutation p.M93L 0.92 deleterious(0.01) benign(0.026) TCGA-37-A5EL-01 X 29973641 29973641 G T IL1RAPL1 Missense_Mutation p.A599S 0.93 tolerated_low_confidence(0.24) probably_damaging(0.985) TCGA-37-A5EL-01 X 54949715 54949715 C A TRO Silent p.A250A 0.87 TCGA-37-A5EL-01 X 65483514 65483514 C T HEPH Silent p.T1130T 0.71 TCGA-37-A5EL-01 X 65819521 65819521 G T EDA2R Silent p.S254S 1.00 TCGA-37-A5EL-01 X 99920591 99920591 C A SRPX2 Missense_Mutation p.R240S 0.88 tolerated(0.24) probably_damaging(0.999) TCGA-37-A5EM-01 10 102114285 102114285 C T SCD Silent p.H181H 0.30 TCGA-37-A5EM-01 10 106865211 106865211 C A SORCS3 Missense_Mutation p.P384T 0.27 deleterious(0.02) probably_damaging(0.963) TCGA-37-A5EM-01 10 118314941 118314941 C A PNLIP Missense_Mutation p.P245T 0.16 deleterious(0) probably_damaging(1) TCGA-37-A5EM-01 10 118314942 118314942 C G PNLIP Missense_Mutation p.P245R 0.16 deleterious(0) probably_damaging(1) TCGA-37-A5EM-01 10 135011991 135011991 C T KNDC1 Missense_Mutation p.A686V 0.19 deleterious(0.03) benign(0.018) TCGA-37-A5EM-01 10 135216193 135216193 C T MTG1 Intron 0.27 TCGA-37-A5EM-01 10 13534787 13534787 C A BEND7 Missense_Mutation p.V169L 0.36 tolerated_low_confidence(0.26) benign(0.328) TCGA-37-A5EM-01 10 13541964 13541964 G A BEND7 Missense_Mutation p.P36S 0.19 tolerated_low_confidence(0.05) probably_damaging(0.999) TCGA-37-A5EM-01 10 16806394 16806394 G A RSU1 Silent p.N92N 0.15 TCGA-37-A5EM-01 10 16970205 16970205 G T CUBN Silent p.T2074T 0.15 TCGA-37-A5EM-01 10 17905658 17905658 G T MRC1L1 Missense_Mutation p.E583D 0.22 benign(0.003) TCGA-37-A5EM-01 10 26462880 26462880 A T MYO3A Missense_Mutation p.K1229N 0.15 tolerated_low_confidence(0.23) benign(0.003) TCGA-37-A5EM-01 10 28224081 28224081 G C ARMC4 Missense_Mutation p.Q785E 0.18 tolerated(0.06) possibly_damaging(0.816) TCGA-37-A5EM-01 10 31810483 31810483 A G ZEB1 Silent p.P741P 0.14 TCGA-37-A5EM-01 10 49667888 49667888 C T ARHGAP22 Silent p.K182K 0.20 TCGA-37-A5EM-01 10 69700694 69700694 A T HERC4 Splice_Site p.X843_splice 0.41 TCGA-37-A5EM-01 10 70514493 70514493 G A CCAR1 Missense_Mutation p.S456N 0.42 tolerated(0.12) benign(0.264) TCGA-37-A5EM-01 10 7755236 7755236 C A ITIH2 Missense_Mutation p.A152D 0.10 deleterious(0) possibly_damaging(0.846) TCGA-37-A5EM-01 10 82280659 82280659 C T TSPAN14 3'UTR 0.08 TCGA-37-A5EM-01 10 88819928 88819928 A G GLUD1 Missense_Mutation p.M423T 0.20 deleterious(0) benign(0.03) TCGA-37-A5EM-01 11 119185586 119185586 C T MCAM Silent p.K119K 0.41 TCGA-37-A5EM-01 11 123481037 123481037 G T GRAMD1B Missense_Mutation p.S494I 0.40 tolerated(0.07) benign(0.221) TCGA-37-A5EM-01 11 124310428 124310428 A G OR8B8 Missense_Mutation p.L185P 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.651) TCGA-37-A5EM-01 11 124487280 124487280 C T PANX3 Silent p.S145S 0.36 TCGA-37-A5EM-01 11 125647861 125647861 T C PATE2 Missense_Mutation p.H38R 0.52 deleterious(0.04) probably_damaging(0.999) TCGA-37-A5EM-01 11 125848263 125848263 T A CDON Missense_Mutation p.T1098S 0.75 deleterious(0.01) possibly_damaging(0.611) TCGA-37-A5EM-01 11 129784740 129784740 T C PRDM10 Silent p.T904T 0.44 TCGA-37-A5EM-01 11 13397219 13397219 C G ARNTL Missense_Mutation p.S411C 0.20 deleterious(0.01) probably_damaging(0.944) TCGA-37-A5EM-01 11 22283795 22283795 G A ANO5 Missense_Mutation p.G584D 0.29 deleterious(0.01) probably_damaging(1) TCGA-37-A5EM-01 11 22382516 22382516 C A SLC17A6 Missense_Mutation p.T216N 0.29 deleterious(0) possibly_damaging(0.588) TCGA-37-A5EM-01 11 28318354 28318354 A T METTL15 Silent p.A218A 0.25 TCGA-37-A5EM-01 11 32410584 32410584 C G WT1 3'UTR 0.23 TCGA-37-A5EM-01 11 44104820 44104820 A T ACCS Missense_Mutation p.S405C 0.32 deleterious(0.02) possibly_damaging(0.838) TCGA-37-A5EM-01 11 4928853 4928853 T A OR51A7 Missense_Mutation p.F85Y 0.27 tolerated(0.25) probably_damaging(0.993) TCGA-37-A5EM-01 11 5364751 5364751 A C OR51B5 Missense_Mutation p.S2A 0.40 tolerated(0.76) benign(0.01) TCGA-37-A5EM-01 11 5474886 5474886 T G OR51I2 Missense_Mutation p.H56Q 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-37-A5EM-01 11 55111145 55111145 C A OR4A16 Missense_Mutation p.Q157K 0.30 deleterious_low_confidence(0.02) probably_damaging(0.936) TCGA-37-A5EM-01 11 55563447 55563447 C A OR5D14 Nonsense_Mutation p.S139* 0.31 TCGA-37-A5EM-01 11 55890707 55890707 C T OR8H3 Missense_Mutation p.P287S 0.21 deleterious(0) probably_damaging(0.992) TCGA-37-A5EM-01 11 59807830 59807830 C T OOSP2 5'UTR 0.21 TCGA-37-A5EM-01 11 6238729 6238729 A C FAM160A2 Nonsense_Mutation p.L710* 0.15 TCGA-37-A5EM-01 11 63233689 63233689 G T HRASLS5 Missense_Mutation p.Q214K 0.28 tolerated(0.12) possibly_damaging(0.488) TCGA-37-A5EM-01 11 68522256 68522256 T A CPT1A 3'Flank 0.29 TCGA-37-A5EM-01 11 68703834 68703834 A G IGHMBP2 Missense_Mutation p.Y629C 0.24 deleterious(0) possibly_damaging(0.896) TCGA-37-A5EM-01 11 68831369 68831369 G A TPCN2 Silent p.G220G 0.23 TCGA-37-A5EM-01 11 71276923 71276923 G A KRTAP5-10 Missense_Mutation p.C97Y 0.18 unknown(0) TCGA-37-A5EM-01 11 71707349 71707349 G - RNF121 Frame_Shift_Del p.G325Afs*76 0.11 TCGA-37-A5EM-01 11 8017604 8017604 A G EIF3F 3'UTR 0.34 TCGA-37-A5EM-01 11 89537498 89537498 G T TRIM49 Missense_Mutation p.P47Q 0.19 tolerated(0.7) benign(0.021) TCGA-37-A5EM-01 11 92714859 92714859 C A MTNR1B Missense_Mutation p.T157N 0.30 deleterious(0) possibly_damaging(0.491) TCGA-37-A5EM-01 11 93212414 93212414 C A SMCO4 5'UTR 0.30 TCGA-37-A5EM-01 11 94212901 94212901 C G MRE11A Missense_Mutation p.G114A 0.22 tolerated(0.54) benign(0.01) TCGA-37-A5EM-01 12 103695816 103695816 C A C12orf42 3'UTR 0.20 TCGA-37-A5EM-01 12 109670566 109670566 G T ACACB Missense_Mutation p.R1365L 0.25 deleterious(0) probably_damaging(1) TCGA-37-A5EM-01 12 112605233 112605233 A - HECTD4 Frame_Shift_Del p.L3995Rfs*75 0.22 TCGA-37-A5EM-01 12 11420936 11420936 G A PRB3 Missense_Mutation p.P83S 0.25 tolerated(0.09) unknown(0) TCGA-37-A5EM-01 12 124236939 124236939 C T ATP6V0A2 Missense_Mutation p.A722V 0.21 tolerated(0.21) benign(0.002) TCGA-37-A5EM-01 12 125397784 125397784 G C UBC Silent p.V178V 0.24 TCGA-37-A5EM-01 12 133501944 133501944 C A ZNF605 3'UTR 0.39 TCGA-37-A5EM-01 12 15475669 15475669 C G PTPRO Missense_Mutation p.H3Q 0.26 tolerated_low_confidence(0.39) benign(0) TCGA-37-A5EM-01 12 20859016 20859016 G T SLCO1C1 Splice_Site p.X135_splice 0.27 TCGA-37-A5EM-01 12 22035748 22035748 T C ABCC9 Silent p.Q657Q 0.20 TCGA-37-A5EM-01 12 31116860 31116860 T A TSPAN11 Missense_Mutation p.Y62N 0.29 deleterious(0.01) probably_damaging(0.962) TCGA-37-A5EM-01 12 4383394 4383394 T C CCND2 Missense_Mutation p.M63T 0.05 deleterious(0) probably_damaging(0.958) TCGA-37-A5EM-01 12 4722802 4722802 G T DYRK4 Silent p.L482L 0.27 TCGA-37-A5EM-01 12 48543620 48543620 C G ASB8 Missense_Mutation p.E132D 0.42 tolerated(0.32) possibly_damaging(0.768) TCGA-37-A5EM-01 12 49422906 49422906 C A KMT2D Missense_Mutation p.W4730L 0.31 unknown(0) TCGA-37-A5EM-01 12 51252725 51252725 G C TMPRSS12 Missense_Mutation p.V181L 0.33 deleterious(0) benign(0.401) TCGA-37-A5EM-01 12 52843605 52843605 T A KRT6B Missense_Mutation p.E283D 0.22 tolerated(0.29) benign(0.282) TCGA-37-A5EM-01 12 53512195 53512195 C T SOAT2 Silent p.L280L 0.25 TCGA-37-A5EM-01 12 55038539 55038539 T A DCD Silent p.G97G 0.40 TCGA-37-A5EM-01 12 57135310 57135310 C A PRIM1 Missense_Mutation p.M297I 0.29 tolerated(0.09) benign(0.221) TCGA-37-A5EM-01 12 57441489 57441489 C A MYO1A Missense_Mutation p.V83L 0.34 tolerated(0.27) benign(0.001) TCGA-37-A5EM-01 12 57538770 57538770 C T LRP1 Missense_Mutation p.S155L 0.18 benign(0.174) TCGA-37-A5EM-01 12 57919950 57919950 C G MBD6 Missense_Mutation p.S400C 0.11 deleterious_low_confidence(0.01) unknown(0) TCGA-37-A5EM-01 12 58087923 58087923 T C OS9 5'UTR 0.26 TCGA-37-A5EM-01 12 6665003 6665003 C G IFFO1 Missense_Mutation p.A65P 0.28 deleterious(0) probably_damaging(0.998) TCGA-37-A5EM-01 12 66765554 66765554 C A GRIP1 Missense_Mutation p.G926C 0.26 deleterious(0) possibly_damaging(0.879) TCGA-37-A5EM-01 12 78513241 78513241 G C NAV3 Missense_Mutation p.G1089R 0.07 tolerated(0.2) probably_damaging(1) TCGA-37-A5EM-01 12 80764428 80764428 A G OTOGL Missense_Mutation p.T2223A 0.30 tolerated(0.52) benign(0.004) TCGA-37-A5EM-01 12 83250871 83250871 C T TMTC2 Silent p.L56L 0.24 TCGA-37-A5EM-01 13 110814650 110814650 C A COL4A1 Silent p.G1463G 0.65 TCGA-37-A5EM-01 13 38153023 38153023 C A POSTN Silent p.L640L 0.48 TCGA-37-A5EM-01 13 39587856 39587856 A T PROSER1 Silent p.S511S 0.39 TCGA-37-A5EM-01 13 39600478 39600478 C A PROSER1 Missense_Mutation p.C139F 0.28 deleterious(0) probably_damaging(0.996) TCGA-37-A5EM-01 13 49027127 49027127 A G RB1 Splice_Site p.X566_splice 0.40 TCGA-37-A5EM-01 13 50126415 50126415 C T RCBTB1 Missense_Mutation p.G204S 0.89 tolerated(0.52) benign(0.204) TCGA-37-A5EM-01 13 96743770 96743770 C G HS6ST3 Missense_Mutation p.C218W 0.60 deleterious(0) probably_damaging(1) TCGA-37-A5EM-01 13 97485476 97485476 G T HS6ST3 3'UTR 0.80 TCGA-37-A5EM-01 14 20692756 20692756 C T OR11H6 Silent p.Y296Y 0.22 TCGA-37-A5EM-01 14 24592406 24592406 G A DCAF11 Nonsense_Mutation p.W510* 0.51 TCGA-37-A5EM-01 14 35871220 35871220 C G NFKBIA Nonstop_Mutation p.*318Sext*5 0.04 TCGA-37-A5EM-01 14 39532572 39532572 T C SEC23A Missense_Mutation p.S452G 0.57 deleterious(0.02) benign(0.013) TCGA-37-A5EM-01 14 52535610 52535610 C T NID2 Missense_Mutation p.E35K 0.41 deleterious(0.01) benign(0.356) TCGA-37-A5EM-01 14 60212531 60212531 G C RTN1 Missense_Mutation p.Q304E 0.50 tolerated(0.39) benign(0.012) TCGA-37-A5EM-01 14 73029147 73029147 G T RGS6 Missense_Mutation p.R482L 0.45 deleterious(0.01) benign(0.388) TCGA-37-A5EM-01 15 100591810 100591810 C T ADAMTS17 Missense_Mutation p.G808S 0.13 tolerated(0.44) benign(0.032) TCGA-37-A5EM-01 15 20649599 20649599 T C HERC2P3 RNA 0.22 TCGA-37-A5EM-01 15 23932337 23932337 C A NDN Missense_Mutation p.D10Y 0.21 tolerated_low_confidence(0.1) benign(0.007) TCGA-37-A5EM-01 15 25468249 25468249 G C SNORD115-27 3'Flank 0.46 TCGA-37-A5EM-01 15 28391460 28391460 C A HERC2 Missense_Mutation p.R3644L 0.26 probably_damaging(0.926) TCGA-37-A5EM-01 15 58247333 58247333 C G ALDH1A2 3'UTR 0.32 TCGA-37-A5EM-01 15 65628150 65628150 C A IGDCC3 Missense_Mutation p.R185M 0.16 deleterious(0) probably_damaging(0.998) TCGA-37-A5EM-01 15 68122575 68122575 G T SKOR1 Silent p.T721T 0.15 TCGA-37-A5EM-01 15 79178494 79178494 G - MORF4L1 Frame_Shift_Del p.V96Ffs*33 0.15 TCGA-37-A5EM-01 15 80465471 80465471 G T FAH Silent p.V274V 0.35 TCGA-37-A5EM-01 15 86124628 86124628 A G AKAP13 Missense_Mutation p.H1110R 0.19 tolerated_low_confidence(0.19) benign(0.211) TCGA-37-A5EM-01 15 90380904 90380904 T G C15orf38-AP3S2 Silent p.T333T 0.45 TCGA-37-A5EM-01 15 91525017 91525017 G A PRC1 Silent p.N154N 0.14 TCGA-37-A5EM-01 16 20435364 20435364 C A ACSM5 Silent p.P298P 0.34 TCGA-37-A5EM-01 16 27518403 27518403 T A GTF3C1 Silent p.L439L 0.54 TCGA-37-A5EM-01 16 30485555 30485555 C G ITGAL Missense_Mutation p.R34G 0.30 tolerated(0.35) benign(0.019) TCGA-37-A5EM-01 16 32890601 32890601 C A SLC6A10P RNA 0.12 TCGA-37-A5EM-01 16 4390969 4390969 A C PAM16 Missense_Mutation p.F81L 0.44 deleterious(0) probably_damaging(0.957) TCGA-37-A5EM-01 16 49670971 49670971 C T ZNF423 Missense_Mutation p.D698N 0.39 tolerated(0.11) possibly_damaging(0.734) TCGA-37-A5EM-01 16 601556 601556 G A CAPN15 Missense_Mutation p.G746D 0.36 deleterious(0) probably_damaging(1) TCGA-37-A5EM-01 16 67516581 67516581 G T AGRP Nonsense_Mutation p.C119* 0.37 TCGA-37-A5EM-01 16 70841793 70841793 C T HYDIN Missense_Mutation p.G5019E 0.27 probably_damaging(0.988) TCGA-37-A5EM-01 16 70942694 70942694 A G HYDIN Missense_Mutation p.F2692S 0.23 benign(0) TCGA-37-A5EM-01 16 77850881 77850881 C A VAT1L Silent p.P99P 0.34 TCGA-37-A5EM-01 16 88706307 88706307 C A IL17C Missense_Mutation p.R141S 0.28 deleterious(0) possibly_damaging(0.889) TCGA-37-A5EM-01 16 89261438 89261438 G T CDH15 Missense_Mutation p.A774S 0.25 deleterious(0.04) benign(0.078) TCGA-37-A5EM-01 16 89949799 89949799 G T TCF25 Missense_Mutation p.G78V 0.28 tolerated(0.05) possibly_damaging(0.796) TCGA-37-A5EM-01 17 10555808 10555808 T A MYH3 Missense_Mutation p.M93L 0.48 deleterious(0.04) benign(0.031) TCGA-37-A5EM-01 17 16526861 16526861 T A ZNF624 Missense_Mutation p.N447Y 0.39 tolerated(0.07) benign(0.255) TCGA-37-A5EM-01 17 1964857 1964857 C A SMG6 Missense_Mutation p.V1397L 0.60 tolerated(0.21) benign(0.348) TCGA-37-A5EM-01 17 40842899 40842899 C A CNTNAP1 Silent p.S666S 0.26 TCGA-37-A5EM-01 17 41201146 41201146 G C BRCA1 Missense_Mutation p.L1821V 0.32 tolerated(0.29) benign(0.001) TCGA-37-A5EM-01 17 48703893 48703893 A G CACNA1G Silent p.K2305K 0.40 TCGA-37-A5EM-01 17 7578410 7578410 T A TP53 Missense_Mutation p.R174W 0.47 deleterious(0) probably_damaging(0.997) TCGA-37-A5EM-01 17 9729542 9729542 T A GLP2R Silent p.T54T 0.14 TCGA-37-A5EM-01 18 10672837 10672837 G A PIEZO2 Missense_Mutation p.S2619F 0.16 tolerated(0.15) benign(0.005) TCGA-37-A5EM-01 18 11868632 11868632 T A GNAL Missense_Mutation p.L334Q 0.23 deleterious(0) probably_damaging(1) TCGA-37-A5EM-01 18 14543012 14543012 G T POTEC Missense_Mutation p.T45N 0.05 deleterious_low_confidence(0) benign(0.403) TCGA-37-A5EM-01 18 28742623 28742623 G T DSC1 5'UTR 0.21 TCGA-37-A5EM-01 18 50705331 50705331 G A DCC Splice_Site p.X473_splice 0.28 TCGA-37-A5EM-01 18 72103765 72103765 G T FAM69C Missense_Mutation p.L411M 0.18 tolerated_low_confidence(0.16) possibly_damaging(0.907) TCGA-37-A5EM-01 18 9570543 9570543 T A PPP4R1 Silent p.L395L 0.38 TCGA-37-A5EM-01 19 14952573 14952573 C T OR7A10 Silent p.V39V 0.36 TCGA-37-A5EM-01 19 15511106 15511106 C A AKAP8L Missense_Mutation p.G350W 0.27 deleterious(0.01) probably_damaging(0.949) TCGA-37-A5EM-01 19 17091433 17091433 C A CPAMD8 Nonsense_Mutation p.E534* 0.25 TCGA-37-A5EM-01 19 17263517 17263517 G T MYO9B Splice_Site p.X333_splice 0.37 TCGA-37-A5EM-01 19 17571473 17571473 C T NXNL1 Missense_Mutation p.R69Q 0.30 deleterious(0.03) possibly_damaging(0.782) TCGA-37-A5EM-01 19 17877578 17877578 G T FCHO1 Missense_Mutation p.V99F 0.25 deleterious(0) possibly_damaging(0.901) TCGA-37-A5EM-01 19 19822923 19822923 T C ZNF14 Silent p.K389K 0.31 TCGA-37-A5EM-01 19 22270785 22270785 G A ZNF257 Missense_Mutation p.C78Y 0.37 tolerated(0.17) benign(0.006) TCGA-37-A5EM-01 19 2351552 2351552 G T LLfos-48D6.1 3'Flank 0.23 TCGA-37-A5EM-01 19 30164935 30164935 G A PLEKHF1 Silent p.V63V 0.03 TCGA-37-A5EM-01 19 30935747 30935747 G T ZNF536 Silent p.L426L 0.22 TCGA-37-A5EM-01 19 35232536 35232536 T A ZNF181 Missense_Mutation p.L417H 0.20 tolerated(0.54) possibly_damaging(0.477) TCGA-37-A5EM-01 19 36159345 36159345 G T UPK1A Intron 0.25 TCGA-37-A5EM-01 19 36727376 36727376 G T ZNF146 Missense_Mutation p.G12W 0.17 deleterious(0) probably_damaging(0.981) TCGA-37-A5EM-01 19 40392567 40392567 T A FCGBP Missense_Mutation p.E2646V 0.28 benign(0.003) TCGA-37-A5EM-01 19 40408492 40408492 G T FCGBP Silent p.P1449P 0.26 TCGA-37-A5EM-01 19 49142836 49142836 G T CA11 Missense_Mutation p.R204S 0.48 tolerated(0.1) probably_damaging(0.993) TCGA-37-A5EM-01 19 51274921 51274921 G T GPR32 Missense_Mutation p.R355L 0.26 tolerated_low_confidence(0.09) benign(0.091) TCGA-37-A5EM-01 19 5456721 5456721 T A ZNRF4 Missense_Mutation p.C407S 0.26 tolerated(0.23) benign(0.004) TCGA-37-A5EM-01 19 55489148 55489148 A G NLRP2 Silent p.L118L 0.51 TCGA-37-A5EM-01 19 55494725 55494725 A G NLRP2 Silent p.A553A 0.42 TCGA-37-A5EM-01 19 56379080 56379080 T C NLRP4 Missense_Mutation p.V731A 0.51 tolerated(1) benign(0.004) TCGA-37-A5EM-01 19 56895368 56895368 T C ZNF582 Missense_Mutation p.H473R 0.48 tolerated(0.07) benign(0) TCGA-37-A5EM-01 19 57035876 57035876 T C ZNF471 Missense_Mutation p.I147T 0.61 tolerated(0.26) benign(0) TCGA-37-A5EM-01 19 58187591 58187591 A G ZSCAN4 Silent p.Q26Q 0.51 TCGA-37-A5EM-01 19 58331295 58331295 G T CTD-2583A14.10 Silent p.A5A 0.27 TCGA-37-A5EM-01 19 5867113 5867113 C A FUT5 Missense_Mutation p.W208C 0.32 deleterious(0) probably_damaging(1) TCGA-37-A5EM-01 19 7997527 7997527 G A TIMM44 Silent p.I324I 0.23 TCGA-37-A5EM-01 19 9068231 9068231 G A MUC16 Silent p.S6405S 0.28 TCGA-37-A5EM-01 1 119925571 119925571 G T HAO2 Silent p.V55V 0.45 TCGA-37-A5EM-01 1 145460128 145460128 G - POLR3GL Frame_Shift_Del p.P32Hfs*32 0.12 TCGA-37-A5EM-01 1 146398393 146398393 C T NBPF12 Missense_Mutation p.L127F 0.15 possibly_damaging(0.773) TCGA-37-A5EM-01 1 149859417 149859417 G A HIST2H2AB Missense_Mutation p.S17L 0.03 deleterious_low_confidence(0) unknown(0) TCGA-37-A5EM-01 1 150235209 150235209 G A CA14 Missense_Mutation p.E168K 0.40 deleterious(0.04) benign(0.33) TCGA-37-A5EM-01 1 150975157 150975157 C A FAM63A Missense_Mutation p.W27C 0.30 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-37-A5EM-01 1 152187552 152187552 G C HRNR Missense_Mutation p.R2185G 0.09 unknown(0) TCGA-37-A5EM-01 1 154989033 154989033 C T ZBTB7B Silent p.L532L 0.35 TCGA-37-A5EM-01 1 156213987 156213987 G T PAQR6 Missense_Mutation p.P241T 0.20 deleterious_low_confidence(0) unknown(0) TCGA-37-A5EM-01 1 157771353 157771353 T C FCRL1 Missense_Mutation p.R301G 0.49 tolerated(0.14) benign(0.028) TCGA-37-A5EM-01 1 158590194 158590194 C A SPTA1 Missense_Mutation p.K2061N 0.44 tolerated(1) benign(0.001) TCGA-37-A5EM-01 1 158747389 158747389 C A OR6N2 Missense_Mutation p.V13L 0.25 tolerated(0.25) benign(0.005) TCGA-37-A5EM-01 1 160095036 160095036 T C ATP1A2 Silent p.C247C 0.21 TCGA-37-A5EM-01 1 160280033 160280033 T A COPA Silent p.P364P 0.46 TCGA-37-A5EM-01 1 160282885 160282885 G C COPA Silent p.L305L 0.25 TCGA-37-A5EM-01 1 161494936 161494936 C A HSPA6 Missense_Mutation p.A163E 0.13 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-37-A5EM-01 1 165218744 165218744 C A LMX1A Missense_Mutation p.D133Y 0.53 deleterious(0) probably_damaging(1) TCGA-37-A5EM-01 1 169510319 169510319 T G F5 Missense_Mutation p.T1337P 0.32 tolerated_low_confidence(0.17) possibly_damaging(0.466) TCGA-37-A5EM-01 1 170004669 170004669 C A KIFAP3 Missense_Mutation p.R181S 0.18 deleterious(0.02) probably_damaging(1) TCGA-37-A5EM-01 1 176760564 176760564 C - PAPPA2 Frame_Shift_Del p.S1658Qfs*3 0.33 TCGA-37-A5EM-01 1 179520258 179520258 T A NPHS2 3'UTR 0.33 TCGA-37-A5EM-01 1 184663407 184663407 C G EDEM3 Missense_Mutation p.Q863H 0.52 tolerated_low_confidence(0.08) benign(0.245) TCGA-37-A5EM-01 1 186089180 186089180 G A HMCN1 Silent p.Q4044Q 0.19 TCGA-37-A5EM-01 1 186314767 186314767 C T TPR Missense_Mutation p.R1053K 0.46 benign(0.22) TCGA-37-A5EM-01 1 190067554 190067554 C T BRINP3 Missense_Mutation p.R632H 0.05 deleterious(0.02) probably_damaging(0.996) TCGA-37-A5EM-01 1 196883720 196883720 G T CFHR4 Nonsense_Mutation p.G425* 0.40 TCGA-37-A5EM-01 1 196887503 196887503 G T CFHR4 Missense_Mutation p.R567S 0.45 tolerated(0.11) benign(0.026) TCGA-37-A5EM-01 1 198721853 198721853 C A PTPRC Missense_Mutation p.S1154Y 0.56 deleterious(0.01) benign(0.043) TCGA-37-A5EM-01 1 204167595 204167595 C T GOLT1A Silent p.S130S 0.17 TCGA-37-A5EM-01 1 205897986 205897986 G C SLC26A9 Missense_Mutation p.H308D 0.15 tolerated(0.18) benign(0.02) TCGA-37-A5EM-01 1 207697123 207697123 G C CR1 Missense_Mutation p.D219H 0.36 deleterious(0.03) probably_damaging(0.973) TCGA-37-A5EM-01 1 215933139 215933139 C T USH2A Silent p.V3698V 0.40 TCGA-37-A5EM-01 1 216052211 216052211 G T USH2A Missense_Mutation p.P2818H 0.52 benign(0.224) TCGA-37-A5EM-01 1 216373309 216373309 G A USH2A Silent p.I1157I 0.45 TCGA-37-A5EM-01 1 220368433 220368433 G A RAB3GAP2 Missense_Mutation p.P373S 0.51 tolerated(0.07) possibly_damaging(0.661) TCGA-37-A5EM-01 1 228112065 228112065 G C WNT9A Missense_Mutation p.S130W 0.35 deleterious(0) probably_damaging(1) TCGA-37-A5EM-01 1 228404778 228404778 G A OBSCN Silent p.P814P 0.55 TCGA-37-A5EM-01 1 22923868 22923868 A C EPHA8 Missense_Mutation p.Y610S 0.30 deleterious(0) probably_damaging(0.997) TCGA-37-A5EM-01 1 22987799 22987799 G C C1QB Missense_Mutation p.D228H 0.25 deleterious(0) possibly_damaging(0.881) TCGA-37-A5EM-01 1 235577904 235577904 C - TBCE Frame_Shift_Del p.I114Mfs*7 0.33 TCGA-37-A5EM-01 1 235827292 235827292 G A LYST Silent p.P3753P 0.05 TCGA-37-A5EM-01 1 237778016 237778016 C T RYR2 Missense_Mutation p.T1863M 0.45 benign(0.001) TCGA-37-A5EM-01 1 24078331 24078331 C T TCEB3 Silent p.S438S 0.28 TCGA-37-A5EM-01 1 245912888 245912888 C T SMYD3 Missense_Mutation p.D422N 0.12 deleterious(0.05) benign(0.008) TCGA-37-A5EM-01 1 247920898 247920898 C G OR1C1 Missense_Mutation p.D271H 0.20 deleterious(0) probably_damaging(0.999) TCGA-37-A5EM-01 1 26509065 26509065 A T CNKSR1 Missense_Mutation p.D205V 0.41 tolerated(0.16) benign(0.19) TCGA-37-A5EM-01 1 29448292 29448292 C T TMEM200B Missense_Mutation p.E17K 0.29 tolerated_low_confidence(0.15) probably_damaging(0.974) TCGA-37-A5EM-01 1 34011798 34011798 C - CSMD2 Frame_Shift_Del p.G2836Vfs*21 0.18 TCGA-37-A5EM-01 1 34123671 34123671 C A CSMD2 Missense_Mutation p.W1401L 0.22 tolerated(0.09) benign(0.012) TCGA-37-A5EM-01 1 36367647 36367647 G C AGO1 Silent p.A413A 0.30 TCGA-37-A5EM-01 1 38078388 38078388 G T RSPO1 3'UTR 0.30 TCGA-37-A5EM-01 1 39341339 39341339 T A GJA9 Silent p.L144L 0.25 TCGA-37-A5EM-01 1 47283841 47283841 C T CYP4B1 Silent p.S437S 0.31 TCGA-37-A5EM-01 1 52825791 52825791 T G CC2D1B Silent p.R240R 0.35 TCGA-37-A5EM-01 1 54610472 54610472 C A CDCP2 Missense_Mutation p.G32C 0.35 deleterious(0) probably_damaging(1) TCGA-37-A5EM-01 1 59248515 59248515 C A JUN Silent p.L76L 0.37 TCGA-37-A5EM-01 1 62579733 62579733 G T INADL Silent p.G1490G 0.27 TCGA-37-A5EM-01 1 74648260 74648260 G T LRRIQ3 Missense_Mutation p.H179N 0.08 tolerated(1) benign(0.004) TCGA-37-A5EM-01 1 93646250 93646250 C A CCDC18 5'Flank 0.46 TCGA-37-A5EM-01 1 94639935 94639935 G T ARHGAP29 Silent p.A1092A 0.26 TCGA-37-A5EM-01 20 13756653 13756653 C A ESF1 Missense_Mutation p.D301Y 0.21 deleterious(0) probably_damaging(0.998) TCGA-37-A5EM-01 20 31629805 31629805 C T BPIFB6 Missense_Mutation p.S391L 0.20 deleterious(0.02) probably_damaging(0.946) TCGA-37-A5EM-01 20 56190600 56190600 T C ZBP1 Missense_Mutation p.E99G 0.37 tolerated(0.14) possibly_damaging(0.727) TCGA-37-A5EM-01 20 62196247 62196247 G A HELZ2 Missense_Mutation p.P1310S 0.20 tolerated(1) benign(0.001) TCGA-37-A5EM-01 20 62407312 62407312 G T ZBTB46 Missense_Mutation p.A314E 0.32 tolerated(0.37) benign(0.246) TCGA-37-A5EM-01 21 10906948 10906948 C A TPTE Missense_Mutation p.G538V 0.05 tolerated(0.13) benign(0.038) TCGA-37-A5EM-01 21 42629177 42629177 C T BACE2 Silent p.A409A 0.22 TCGA-37-A5EM-01 21 45674561 45674561 C A DNMT3L Missense_Mutation p.S211I 0.15 tolerated(0.57) benign(0.231) TCGA-37-A5EM-01 21 46197251 46197251 T A UBE2G2 Silent p.P69P 0.23 TCGA-37-A5EM-01 21 47695150 47695150 C - MCM3AP Frame_Shift_Del p.E650Rfs*6 0.27 TCGA-37-A5EM-01 22 16449156 16449156 G C OR11H1 Missense_Mutation p.L217V 0.29 tolerated(0.21) benign(0.327) TCGA-37-A5EM-01 22 20918864 20918864 G C MED15 Missense_Mutation p.Q193H 0.59 tolerated_low_confidence(0.07) unknown(0) TCGA-37-A5EM-01 22 24629930 24629930 G T GGT5 Silent p.I72I 0.52 TCGA-37-A5EM-01 22 29707942 29707942 G T GAS2L1 3'UTR 0.62 TCGA-37-A5EM-01 22 30416840 30416840 C T MTMR3 Silent p.S1064S 0.33 TCGA-37-A5EM-01 22 42538018 42538018 C A NDUFA6-AS1 3'Flank 0.47 TCGA-37-A5EM-01 2 10126410 10126410 G A GRHL1 Silent p.K423K 0.25 TCGA-37-A5EM-01 2 101654067 101654067 C A TBC1D8 Missense_Mutation p.S445I 0.30 deleterious(0.04) benign(0.025) TCGA-37-A5EM-01 2 112592221 112592221 C T ANAPC1 Missense_Mutation p.G782R 0.23 tolerated(0.48) benign(0.006) TCGA-37-A5EM-01 2 138771695 138771695 G T HNMT Missense_Mutation p.A292S 0.29 tolerated(0.73) benign(0.076) TCGA-37-A5EM-01 2 163693113 163693113 G A KCNH7 Nonsense_Mutation p.Q81* 0.38 TCGA-37-A5EM-01 2 165404297 165404297 G C GRB14 Silent p.T118T 0.41 TCGA-37-A5EM-01 2 166210847 166210847 G T SCN2A Missense_Mutation p.R1022L 0.26 tolerated(0.71) benign(0.23) TCGA-37-A5EM-01 2 168100446 168100446 G T XIRP2 Missense_Mutation p.Q848H 0.33 benign(0.222) TCGA-37-A5EM-01 2 170060572 170060572 G T LRP2 Missense_Mutation p.T2642N 0.33 benign(0.025) TCGA-37-A5EM-01 2 171806244 171806244 C T GORASP2 Missense_Mutation p.H114Y 0.25 deleterious(0) probably_damaging(1) TCGA-37-A5EM-01 2 176988672 176988672 C T HOXD9 Silent p.A276A 0.27 TCGA-37-A5EM-01 2 177034223 177034223 C A HOXD3 Silent p.P127P 0.13 TCGA-37-A5EM-01 2 17942721 17942721 A G GEN1 Missense_Mutation p.M74V 0.31 deleterious(0) possibly_damaging(0.705) TCGA-37-A5EM-01 2 179431071 179431071 G A TTN Silent p.S26596S 0.26 TCGA-37-A5EM-01 2 179495080 179495080 C T TTN Silent p.K14723K 0.35 TCGA-37-A5EM-01 2 215645796 215645796 C G BARD1 Missense_Mutation p.E268Q 0.29 deleterious(0.02) possibly_damaging(0.616) TCGA-37-A5EM-01 2 219677807 219677807 T C CYP27A1 Silent p.A335A 0.23 TCGA-37-A5EM-01 2 219824758 219824758 G T CDK5R2 Silent p.A72A 0.35 TCGA-37-A5EM-01 2 220312768 220312768 C T SPEG Silent p.R296R 0.33 TCGA-37-A5EM-01 2 233704599 233704599 C T GIGYF2 Missense_Mutation p.T957I 0.15 unknown(0) TCGA-37-A5EM-01 2 236649636 236649636 G C AGAP1 Missense_Mutation p.D114H 0.32 deleterious(0) probably_damaging(0.999) TCGA-37-A5EM-01 2 237075015 237075015 C T GBX2 Missense_Mutation p.E197K 0.26 deleterious(0.02) benign(0.257) TCGA-37-A5EM-01 2 26609318 26609318 G T EPT1 Nonsense_Mutation p.G337* 0.25 TCGA-37-A5EM-01 2 26706516 26706516 C A OTOF Silent p.G402G 0.39 TCGA-37-A5EM-01 2 27449113 27449113 A G CAD Missense_Mutation p.I653V 0.25 tolerated(0.61) benign(0.011) TCGA-37-A5EM-01 2 32289035 32289035 G A SPAST Silent p.P45P 0.08 TCGA-37-A5EM-01 2 39089404 39089404 C T DHX57 Missense_Mutation p.G152E 0.06 tolerated(0.83) benign(0.005) TCGA-37-A5EM-01 2 40397459 40397459 C G SLC8A1 Missense_Mutation p.R667T 0.32 tolerated(0.25) benign(0.101) TCGA-37-A5EM-01 2 54874336 54874336 A G SPTBN1 Silent p.A1645A 0.28 TCGA-37-A5EM-01 2 70923512 70923512 C T ADD2 Silent p.T113T 0.23 TCGA-37-A5EM-01 2 79314698 79314698 A T REG1B Missense_Mutation p.L14Q 0.40 deleterious(0) possibly_damaging(0.766) TCGA-37-A5EM-01 2 89619828 89619828 C G IGKV1-39 Silent p.L10L 0.24 TCGA-37-A5EM-01 2 89901339 89901339 C A IGKV1D-39 Missense_Mutation p.L9I 0.29 deleterious(0.03) benign(0.213) TCGA-37-A5EM-01 2 99242225 99242225 T G MGAT4A Silent p.S514S 0.26 TCGA-37-A5EM-01 3 111368578 111368578 A T CD96 Silent p.P561P 0.20 TCGA-37-A5EM-01 3 113122803 113122813 CCACTTTGATC - WDR52 Frame_Shift_Del p.I353Afs*15 0.12 TCGA-37-A5EM-01 3 11600195 11600195 G A VGLL4 Silent p.S242S 0.45 TCGA-37-A5EM-01 3 121341759 121341759 G T FBXO40 Missense_Mutation p.V495F 0.21 deleterious(0) probably_damaging(0.923) TCGA-37-A5EM-01 3 122419761 122419761 C T PARP14 Missense_Mutation p.P787L 0.06 tolerated(0.31) benign(0.001) TCGA-37-A5EM-01 3 128628914 128628914 C T ACAD9 Silent p.I538I 0.15 TCGA-37-A5EM-01 3 130284229 130284229 A G COL6A6 Silent p.A351A 0.23 TCGA-37-A5EM-01 3 133666160 133666160 C A SLCO2A1 Missense_Mutation p.C412F 0.24 deleterious(0.03) benign(0.158) TCGA-37-A5EM-01 3 151131002 151131002 A T MED12L Silent p.P2037P 0.46 TCGA-37-A5EM-01 3 158310266 158310266 A G MLF1 Missense_Mutation p.R47G 0.25 tolerated(0.05) benign(0.344) TCGA-37-A5EM-01 3 164741482 164741482 G T SI Missense_Mutation p.S992Y 0.08 deleterious(0.01) possibly_damaging(0.761) TCGA-37-A5EM-01 3 165491295 165491295 C A BCHE Splice_Site p.X562_splice 0.09 TCGA-37-A5EM-01 3 167510468 167510468 A T SERPINI1 Missense_Mutation p.K191M 0.12 deleterious(0) probably_damaging(0.977) TCGA-37-A5EM-01 3 170078880 170078880 A G SKIL Missense_Mutation p.Q254R 0.15 tolerated(0.3) benign(0.005) TCGA-37-A5EM-01 3 179322592 179322592 C T NDUFB5 5'UTR 0.69 TCGA-37-A5EM-01 3 185307949 185307949 C G SENP2 Missense_Mutation p.P50R 0.10 tolerated(0.25) possibly_damaging(0.894) TCGA-37-A5EM-01 3 189608588 189608588 A T TP63 Missense_Mutation p.R555W 0.16 deleterious(0.02) probably_damaging(0.998) TCGA-37-A5EM-01 3 193007770 193007770 G T ATP13A5 Nonsense_Mutation p.S976* 0.05 TCGA-37-A5EM-01 3 195487884 195487884 C T MUC4 Missense_Mutation p.E4907K 0.11 possibly_damaging(0.636) TCGA-37-A5EM-01 3 195516445 195516445 G T MUC4 Missense_Mutation p.S669Y 0.11 unknown(0) TCGA-37-A5EM-01 3 195517137 195517137 G C MUC4 Silent p.L438L 0.15 TCGA-37-A5EM-01 3 195517705 195517705 G C MUC4 Missense_Mutation p.S249C 0.12 unknown(0) TCGA-37-A5EM-01 3 195517887 195517887 G C MUC4 Missense_Mutation p.I188M 0.16 unknown(0) TCGA-37-A5EM-01 3 196654721 196654721 C T SENP5 Missense_Mutation p.L693F 0.08 tolerated(0.09) probably_damaging(0.999) TCGA-37-A5EM-01 3 42729686 42729686 G T KLHL40 Missense_Mutation p.R402L 0.32 deleterious(0.02) probably_damaging(0.986) TCGA-37-A5EM-01 3 50355767 50355767 G A HYAL2 Silent p.P405P 0.07 TCGA-37-A5EM-01 3 52469951 52469951 C A SEMA3G Missense_Mutation p.V673L 0.49 deleterious(0.04) probably_damaging(0.997) TCGA-37-A5EM-01 3 78685068 78685068 A G ROBO1 Silent p.T1076T 0.56 TCGA-37-A5EM-01 4 102946664 102946664 C A BANK1 Missense_Mutation p.P531Q 0.40 tolerated(0.81) benign(0.005) TCGA-37-A5EM-01 4 114280247 114280247 G T ANK2 Missense_Mutation p.R3491S 0.40 possibly_damaging(0.897) TCGA-37-A5EM-01 4 122250643 122250643 T C QRFPR Silent p.A374A 0.33 TCGA-37-A5EM-01 4 146563516 146563516 A G MMAA Silent p.G147G 0.41 TCGA-37-A5EM-01 4 162508674 162508674 A G FSTL5 Silent p.V316V 0.30 TCGA-37-A5EM-01 4 164534551 164534551 G A MARCH1 Intron 0.33 TCGA-37-A5EM-01 4 175564804 175564804 A G GLRA3 3'UTR 0.39 TCGA-37-A5EM-01 4 186508827 186508827 G T SORBS2 Missense_Mutation p.T1186N 0.52 deleterious(0) probably_damaging(0.985) TCGA-37-A5EM-01 4 2515585 2515585 A C RNF4 3'UTR 0.29 TCGA-37-A5EM-01 4 3449980 3449980 G A HGFAC Missense_Mutation p.D588N 0.30 deleterious(0) probably_damaging(0.983) TCGA-37-A5EM-01 4 36121311 36121311 G C ARAP2 Missense_Mutation p.D1308E 0.36 tolerated(0.47) benign(0.074) TCGA-37-A5EM-01 4 38916619 38916619 G A FAM114A1 Silent p.G290G 0.26 TCGA-37-A5EM-01 4 52960707 52960707 G A SPATA18 Silent p.R526R 0.09 TCGA-37-A5EM-01 4 57181923 57181923 G C KIAA1211 Missense_Mutation p.G752A 0.39 tolerated(0.23) benign(0) TCGA-37-A5EM-01 4 6304171 6304171 C - WFS1 Frame_Shift_Del p.F884Sfs*68 0.23 TCGA-37-A5EM-01 4 79186248 79186248 G T FRAS1 Missense_Mutation p.G225C 0.43 probably_damaging(0.989) TCGA-37-A5EM-01 5 10450185 10450185 G T ROPN1L Missense_Mutation p.W126L 0.25 deleterious(0) probably_damaging(0.968) TCGA-37-A5EM-01 5 10450186 10450186 G T ROPN1L Missense_Mutation p.W126C 0.25 deleterious(0) probably_damaging(0.995) TCGA-37-A5EM-01 5 127487010 127487010 G A SLC12A2 Missense_Mutation p.V729I 0.44 tolerated(0.34) benign(0.089) TCGA-37-A5EM-01 5 13871701 13871701 G T DNAH5 Silent p.V1190V 0.29 TCGA-37-A5EM-01 5 140256664 140256665 GC - PCDHA12 Frame_Shift_Del p.D539Rfs*39 0.22 TCGA-37-A5EM-01 5 140531083 140531083 C A PCDHB6 Nonsense_Mutation p.Y415* 0.24 TCGA-37-A5EM-01 5 140559686 140559686 C A PCDHB8 Missense_Mutation p.L691M 0.30 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-37-A5EM-01 5 141017939 141017939 G C RELL2 Silent p.S49S 0.23 TCGA-37-A5EM-01 5 143616 143616 C T PLEKHG4B Silent p.P247P 0.31 TCGA-37-A5EM-01 5 147261028 147261028 C A SCGB3A2 Missense_Mutation p.N25K 0.26 deleterious(0.04) benign(0.022) TCGA-37-A5EM-01 5 15928012 15928012 C T FBXL7 Silent p.S47S 0.25 TCGA-37-A5EM-01 5 174152007 174152007 G A MSX2 Nonsense_Mutation p.W115* 0.07 TCGA-37-A5EM-01 5 176056468 176056468 G A SNCB Intron 0.21 TCGA-37-A5EM-01 5 181748 181748 G T PLEKHG4B Missense_Mutation p.V1152L 0.36 deleterious(0.04) benign(0.097) TCGA-37-A5EM-01 5 31799312 31799312 A T PDZD2 5'UTR 0.30 TCGA-37-A5EM-01 5 35065910 35065910 C A PRLR Nonsense_Mutation p.E384* 0.26 TCGA-37-A5EM-01 5 41149375 41149375 T A C6 Missense_Mutation p.Y864F 0.26 tolerated(0.11) benign(0.06) TCGA-37-A5EM-01 5 45262161 45262161 C A HCN1 Missense_Mutation p.M845I 0.24 deleterious_low_confidence(0) possibly_damaging(0.775) TCGA-37-A5EM-01 5 52160842 52160842 T C ITGA1 Missense_Mutation p.L141S 0.34 tolerated(0.55) benign(0.037) TCGA-37-A5EM-01 5 56242838 56242838 T A MIER3 Missense_Mutation p.D32V 0.29 deleterious(0) possibly_damaging(0.88) TCGA-37-A5EM-01 5 89989889 89989889 G T GPR98 Missense_Mutation p.C2439F 0.56 possibly_damaging(0.831) TCGA-37-A5EM-01 6 105781321 105781321 T A PREP Missense_Mutation p.N295Y 0.24 deleterious(0) probably_damaging(0.997) TCGA-37-A5EM-01 6 106553001 106553001 G T PRDM1 Silent p.T322T 0.29 TCGA-37-A5EM-01 6 11723640 11723640 G T ADTRP Missense_Mutation p.S218R 0.06 deleterious(0) possibly_damaging(0.776) TCGA-37-A5EM-01 6 119511050 119511050 T A MAN1A1 Splice_Site p.X443_splice 0.36 TCGA-37-A5EM-01 6 130166952 130166952 C T TMEM244 Missense_Mutation p.V27M 0.32 tolerated(0.07) benign(0.05) TCGA-37-A5EM-01 6 15497142 15497142 C A JARID2 Silent p.P562P 0.46 TCGA-37-A5EM-01 6 15497143 15497143 T G JARID2 Missense_Mutation p.S563A 0.45 tolerated(0.16) benign(0.05) TCGA-37-A5EM-01 6 15497268 15497268 G C JARID2 Missense_Mutation p.E604D 0.87 tolerated(0.36) benign(0.016) TCGA-37-A5EM-01 6 155575127 155575127 T G TIAM2 Missense_Mutation p.W1416G 0.35 deleterious(0) probably_damaging(0.964) TCGA-37-A5EM-01 6 159457325 159457325 G T TAGAP Nonsense_Mutation p.S577* 0.22 TCGA-37-A5EM-01 6 159618538 159618538 C A FNDC1 Missense_Mutation p.P62H 0.27 deleterious(0) unknown(0) TCGA-37-A5EM-01 6 165713937 165713937 G A C6orf118 Silent p.F264F 0.28 TCGA-37-A5EM-01 6 168299146 168299146 G T MLLT4 Nonsense_Mutation p.G527* 0.26 TCGA-37-A5EM-01 6 22287543 22287543 T C PRL 3'UTR 0.06 TCGA-37-A5EM-01 6 26124857 26124857 G C HIST1H2AC 3'UTR 0.10 TCGA-37-A5EM-01 6 28887929 28887929 G A TRIM27 Missense_Mutation p.R203C 0.30 tolerated(0.1) benign(0) TCGA-37-A5EM-01 6 29365327 29365328 - A OR12D2 Frame_Shift_Ins p.N285Kfs*18 0.28 TCGA-37-A5EM-01 6 29394724 29394724 C A OR11A1 Missense_Mutation p.G232V 0.28 tolerated(0.14) benign(0.115) TCGA-37-A5EM-01 6 34214592 34214593 - T C6orf1 Frame_Shift_Ins p.M60Nfs*5 0.26 TCGA-37-A5EM-01 6 46827202 46827202 A G GPR116 Missense_Mutation p.V813A 0.21 tolerated(0.75) benign(0.001) TCGA-37-A5EM-01 6 47563723 47563723 G T CD2AP Missense_Mutation p.R412L 0.27 deleterious(0.01) benign(0.035) TCGA-37-A5EM-01 6 51875151 51875151 C T PKHD1 Missense_Mutation p.V1903I 0.35 deleterious(0.02) benign(0.048) TCGA-37-A5EM-01 6 56918468 56918468 G A KIAA1586 Missense_Mutation p.G391S 0.21 deleterious(0) probably_damaging(0.999) TCGA-37-A5EM-01 6 57512480 57512480 T C PRIM2 3'UTR 0.11 TCGA-37-A5EM-01 6 84233502 84233502 G A PRSS35 Silent p.K114K 0.27 TCGA-37-A5EM-01 6 84665056 84665056 A G CYB5R4 Silent p.E462E 0.32 TCGA-37-A5EM-01 6 96053706 96053706 A T MANEA Missense_Mutation p.I272F 0.26 deleterious(0.04) benign(0.035) TCGA-37-A5EM-01 7 103180661 103180661 G A RELN Missense_Mutation p.P2305S 0.51 tolerated(0.17) probably_damaging(0.999) TCGA-37-A5EM-01 7 107314636 107314636 T G SLC26A4 Missense_Mutation p.V148G 0.12 deleterious(0) probably_damaging(0.943) TCGA-37-A5EM-01 7 11485716 11485716 A - THSD7A Frame_Shift_Del p.V1013Wfs*43 0.29 TCGA-37-A5EM-01 7 11676215 11676215 G A THSD7A Silent p.L188L 0.35 TCGA-37-A5EM-01 7 123152372 123152372 T A IQUB Missense_Mutation p.Y8F 0.58 tolerated_low_confidence(0.9) benign(0) TCGA-37-A5EM-01 7 123516942 123516942 C T HYAL4 Silent p.N393N 0.45 TCGA-37-A5EM-01 7 124386682 124386682 C T GPR37 Missense_Mutation p.S580N 0.03 deleterious(0.02) probably_damaging(0.94) TCGA-37-A5EM-01 7 127013783 127013783 C T ZNF800 Missense_Mutation p.R536Q 0.54 deleterious(0.01) possibly_damaging(0.85) TCGA-37-A5EM-01 7 133833006 133833006 C T LRGUK Missense_Mutation p.H202Y 0.45 tolerated(1) benign(0) TCGA-37-A5EM-01 7 136700959 136700959 G C CHRM2 Missense_Mutation p.K449N 0.12 tolerated(0.31) benign(0.094) TCGA-37-A5EM-01 7 148876358 148876358 G T ZNF398 Missense_Mutation p.S465I 0.55 deleterious(0.05) probably_damaging(0.999) TCGA-37-A5EM-01 7 149129536 149129536 G A ZNF777 Silent p.P609P 0.53 TCGA-37-A5EM-01 7 149500636 149500636 G - SSPO RNA 0.37 TCGA-37-A5EM-01 7 1536840 1536840 G A INTS1 Silent p.F512F 0.12 TCGA-37-A5EM-01 7 154684298 154684298 G T DPP6 3'UTR 0.12 TCGA-37-A5EM-01 7 15725586 15725586 C A MEOX2 Missense_Mutation p.D148Y 0.52 deleterious(0) benign(0.424) TCGA-37-A5EM-01 7 1594947 1594947 G C TMEM184A Silent p.V58V 0.59 TCGA-37-A5EM-01 7 20201482 20201482 G A MACC1 Silent p.L2L 0.46 TCGA-37-A5EM-01 7 20698847 20698847 G T ABCB5 Intron 0.20 TCGA-37-A5EM-01 7 37283996 37283996 C G ELMO1 Missense_Mutation p.E138D 0.36 tolerated(0.92) benign(0.005) TCGA-37-A5EM-01 7 4855860 4855860 C A RADIL Missense_Mutation p.R655S 0.10 deleterious(0) possibly_damaging(0.515) TCGA-37-A5EM-01 7 57528900 57528900 G T ZNF716 Nonsense_Mutation p.E245* 0.38 TCGA-37-A5EM-01 7 70597922 70597922 G T WBSCR17 Missense_Mutation p.R45L 0.39 deleterious_low_confidence(0.02) benign(0.238) TCGA-37-A5EM-01 7 86468805 86468805 C A GRM3 Missense_Mutation p.L659M 0.48 tolerated(0.06) probably_damaging(0.98) TCGA-37-A5EM-01 7 86493726 86493726 C A GRM3 3'UTR 0.51 TCGA-37-A5EM-01 7 92735286 92735286 T C SAMD9 Missense_Mutation p.N42S 0.08 tolerated(0.65) benign(0.006) TCGA-37-A5EM-01 7 94937399 94937399 A T PON1 Missense_Mutation p.Y208N 0.14 deleterious(0) probably_damaging(1) TCGA-37-A5EM-01 7 97944917 97944917 T C BAIAP2L1 Missense_Mutation p.E165G 0.48 deleterious(0) probably_damaging(1) TCGA-37-A5EM-01 8 10469232 10469232 C T RP1L1 Silent p.L792L 0.15 TCGA-37-A5EM-01 8 113649101 113649101 G T CSMD3 Silent p.I1220I 0.12 TCGA-37-A5EM-01 8 113697755 113697755 G A CSMD3 Missense_Mutation p.L788F 0.56 tolerated(0.08) possibly_damaging(0.697) TCGA-37-A5EM-01 8 120758948 120758948 G A TAF2 Silent p.N1035N 0.11 TCGA-37-A5EM-01 8 124333319 124333319 C A ATAD2 3'UTR 0.56 TCGA-37-A5EM-01 8 135613832 135613832 T A ZFAT Silent p.S710S 0.62 TCGA-37-A5EM-01 8 135615044 135615044 A G ZFAT Silent p.Y306Y 0.07 TCGA-37-A5EM-01 8 139144905 139144905 G A FAM135B Silent p.I1384I 0.11 TCGA-37-A5EM-01 8 145738828 145738828 G A RECQL4 Missense_Mutation p.A746V 0.59 deleterious(0) possibly_damaging(0.901) TCGA-37-A5EM-01 8 1497568 1497568 C A DLGAP2 Silent p.R237R 0.13 TCGA-37-A5EM-01 8 28420536 28420536 T C FZD3 3'UTR 0.11 TCGA-37-A5EM-01 8 30915968 30915968 G T WRN Missense_Mutation p.S2I 0.14 deleterious_low_confidence(0) benign(0.1) TCGA-37-A5EM-01 8 42720575 42720575 G A RNF170 Missense_Mutation p.P127L 0.30 deleterious(0) probably_damaging(1) TCGA-37-A5EM-01 8 48647973 48647973 C G SPIDR Missense_Mutation p.I903M 0.12 deleterious(0) probably_damaging(0.951) TCGA-37-A5EM-01 8 53079457 53079457 G T ST18 Missense_Mutation p.R387S 0.49 deleterious(0) probably_damaging(0.941) TCGA-37-A5EM-01 8 6299603 6299603 A G MCPH1 Missense_Mutation p.Q199R 0.13 deleterious(0.01) benign(0.08) TCGA-37-A5EM-01 8 67547522 67547522 C A VCPIP1 Missense_Mutation p.L961F 0.11 deleterious(0) probably_damaging(0.995) TCGA-37-A5EM-01 8 68112725 68112725 T A ARFGEF1 Missense_Mutation p.Y1764F 0.13 deleterious(0.01) possibly_damaging(0.638) TCGA-37-A5EM-01 8 74894659 74894659 A G TMEM70 3'UTR 0.11 TCGA-37-A5EM-01 8 77617407 77617407 G T ZFHX4 Missense_Mutation p.G362C 0.11 probably_damaging(0.992) TCGA-37-A5EM-01 8 93026880 93026880 G T RUNX1T1 Missense_Mutation p.T143N 0.53 deleterious(0.01) possibly_damaging(0.89) TCGA-37-A5EM-01 9 103004935 103004935 C T INVS Missense_Mutation p.H294Y 0.29 deleterious(0) probably_damaging(1) TCGA-37-A5EM-01 9 104170921 104170921 A T ZNF189 Missense_Mutation p.T291S 0.26 tolerated(0.48) possibly_damaging(0.587) TCGA-37-A5EM-01 9 107289066 107289066 A T OR13C4 Missense_Mutation p.V142E 0.29 deleterious(0) benign(0.053) TCGA-37-A5EM-01 9 124544895 124544895 A T DAB2IP Intron 0.21 TCGA-37-A5EM-01 9 124855654 124855654 G T TTLL11 Missense_Mutation p.A15D 0.41 tolerated_low_confidence(0.22) benign(0.017) TCGA-37-A5EM-01 9 128064329 128064329 G T GAPVD1 Missense_Mutation p.G85W 0.32 deleterious(0) probably_damaging(0.979) TCGA-37-A5EM-01 9 136521643 136521643 A C DBH Splice_Site p.X479_splice 0.19 TCGA-37-A5EM-01 9 136599127 136599127 G T SARDH Missense_Mutation p.Q57K 0.34 tolerated(0.79) benign(0.001) TCGA-37-A5EM-01 9 137704488 137704488 G T COL5A1 Missense_Mutation p.G1261V 0.17 unknown(0) TCGA-37-A5EM-01 9 40774684 40774684 A G ZNF658 Silent p.A197A 0.25 TCGA-37-A5EM-01 9 43626611 43626611 C A SPATA31A6 Silent p.V692V 0.35 TCGA-37-A5EM-01 9 8339003 8339003 G C PTPRD Nonsense_Mutation p.Y1766* 0.37 TCGA-37-A5EM-01 9 95285153 95285153 G C ECM2 5'UTR 0.29 TCGA-37-A5EM-01 X 134987510 134987510 T C SAGE1 Missense_Mutation p.M138T 0.58 tolerated(0.06) possibly_damaging(0.626) TCGA-37-A5EM-01 X 140969404 140969404 T A MAGEC3 Missense_Mutation p.V244E 0.58 deleterious(0.01) possibly_damaging(0.727) TCGA-37-A5EM-01 X 140992759 140992759 C G MAGEC1 5'UTR 0.40 TCGA-37-A5EM-01 X 140996561 140996561 C T MAGEC1 Missense_Mutation p.S1124L 0.07 deleterious_low_confidence(0.01) unknown(0) TCGA-37-A5EM-01 X 16685647 16685647 G A CTPS2 Missense_Mutation p.P429L 0.04 tolerated(0.18) benign(0) TCGA-37-A5EM-01 X 37655351 37655351 C G CYBB Missense_Mutation p.L211V 0.61 tolerated(0.16) probably_damaging(0.986) TCGA-37-A5EM-01 X 38031173 38031173 C A SRPX Missense_Mutation p.D163Y 0.60 tolerated(0.29) probably_damaging(1) TCGA-37-A5EM-01 X 57475142 57475142 G T FAAH2 Missense_Mutation p.A472S 0.57 tolerated(0.53) benign(0.074) TCGA-37-A5EM-01 X 73042847 73042847 A G XIST RNA 0.24 TCGA-37-A5EM-01 X 73065353 73065353 G A XIST RNA 0.62 TCGA-37-A5EM-01 X 75648214 75648214 A T MAGEE1 5'UTR 0.68 TCGA-37-A5EM-01 X 77225102 77225102 C G PGAM4 Missense_Mutation p.G12R 0.53 deleterious(0.03) possibly_damaging(0.734) TCGA-37-A5EM-01 X 79286137 79286137 C A TBX22 Missense_Mutation p.L364M 0.67 deleterious(0) probably_damaging(0.969) TCGA-37-A5EM-01 X 79980474 79980474 C T BRWD3 Nonsense_Mutation p.W493* 0.08 TCGA-37-A5EM-01 X 83359602 83359602 C A RPS6KA6 Missense_Mutation p.D507Y 0.57 deleterious(0) probably_damaging(0.993) TCGA-37-A5EM-01 Y 14872438 14872438 A G USP9Y Missense_Mutation p.I597M 0.60 tolerated(0.23) benign(0) TCGA-37-A5EN-01 10 103530345 103530345 G A FGF8 Missense_Mutation p.T159M 0.15 tolerated(0.05) possibly_damaging(0.589) TCGA-37-A5EN-01 10 108923759 108923759 C T SORCS1 Missense_Mutation p.A176T 0.36 deleterious(0) possibly_damaging(0.89) TCGA-37-A5EN-01 10 114202019 114202019 T A ZDHHC6 Missense_Mutation p.L150F 0.24 tolerated(1) benign(0.012) TCGA-37-A5EN-01 10 115380454 115380454 G T NRAP Missense_Mutation p.A928E 0.31 tolerated(0.44) probably_damaging(0.999) TCGA-37-A5EN-01 10 120925110 120925110 C T SFXN4 Missense_Mutation p.R17H 0.27 tolerated_low_confidence(0.18) benign(0.198) TCGA-37-A5EN-01 10 127434389 127434389 T G EDRF1 Missense_Mutation p.L902V 0.20 deleterious(0) possibly_damaging(0.837) TCGA-37-A5EN-01 10 15647791 15647791 C G ITGA8 Splice_Site p.X635_splice 0.36 TCGA-37-A5EN-01 10 17275678 17275678 A G VIM Silent p.E239E 0.20 TCGA-37-A5EN-01 10 22016812 22016812 A G MLLT10 Missense_Mutation p.N673S 0.23 tolerated(0.98) benign(0) TCGA-37-A5EN-01 10 27434567 27434567 T G YME1L1 Intron 0.42 TCGA-37-A5EN-01 10 38241152 38241152 G A ZNF25 Missense_Mutation p.P425L 0.29 deleterious(0) probably_damaging(1) TCGA-37-A5EN-01 10 51093308 51093308 G C PARG Missense_Mutation p.Q106E 0.12 tolerated(1) benign(0.086) TCGA-37-A5EN-01 10 60556180 60556180 T C BICC1 Silent p.S420S 0.18 TCGA-37-A5EN-01 10 6521127 6521127 C T PRKCQ Missense_Mutation p.V394I 0.17 deleterious(0) probably_damaging(0.983) TCGA-37-A5EN-01 10 79781636 79781636 G A POLR3A Missense_Mutation p.R344C 0.12 deleterious(0) probably_damaging(0.999) TCGA-37-A5EN-01 11 105623827 105623827 C A GRIA4 Missense_Mutation p.P123H 0.45 deleterious(0) probably_damaging(1) TCGA-37-A5EN-01 11 110462770 110462770 C A ARHGAP20 Missense_Mutation p.M358I 0.40 tolerated(0.33) benign(0) TCGA-37-A5EN-01 11 111782393 111782393 G T CRYAB Missense_Mutation p.S19Y 0.20 tolerated(1) benign(0.019) TCGA-37-A5EN-01 11 121033077 121033077 G T TECTA Missense_Mutation p.C1757F 0.23 deleterious(0) probably_damaging(0.944) TCGA-37-A5EN-01 11 1268814 1268814 C T MUC5B Silent p.T3568T 0.16 TCGA-37-A5EN-01 11 19077706 19077706 G C MRGPRX2 Missense_Mutation p.Q82E 0.11 tolerated(0.11) benign(0.039) TCGA-37-A5EN-01 11 26713969 26713969 A G SLC5A12 Intron 0.22 TCGA-37-A5EN-01 11 30902730 30902730 C A DCDC1 Missense_Mutation p.M1733I 0.52 tolerated(0.05) benign(0) TCGA-37-A5EN-01 11 43876723 43876723 G A HSD17B12 Nonsense_Mutation p.W288* 0.11 TCGA-37-A5EN-01 11 47508786 47508786 A C CELF1 Missense_Mutation p.C89W 0.56 deleterious(0) probably_damaging(0.927) TCGA-37-A5EN-01 11 55433463 55433463 C A OR4C6 Nonsense_Mutation p.S274* 0.42 TCGA-37-A5EN-01 11 56409028 56409028 A G OR5AP2 Silent p.Y296Y 0.21 TCGA-37-A5EN-01 11 58034623 58034623 G C OR10W1 Silent p.L236L 0.15 TCGA-37-A5EN-01 11 58956639 58956639 C T DTX4 Silent p.I334I 0.13 TCGA-37-A5EN-01 11 58962815 58962815 C A DTX4 Silent p.I503I 0.19 TCGA-37-A5EN-01 11 58979409 58979409 C T MPEG1 Silent p.L310L 0.14 TCGA-37-A5EN-01 11 59245163 59245163 T C OR4D10 Silent p.S87S 0.17 TCGA-37-A5EN-01 11 59863063 59863063 C A MS4A2 Missense_Mutation p.N223K 0.14 tolerated(0.06) benign(0.223) TCGA-37-A5EN-01 11 60183308 60183308 G A MS4A14 Missense_Mutation p.M322I 0.16 tolerated(0.15) benign(0.008) TCGA-37-A5EN-01 11 63066999 63066999 C A SLC22A10 Missense_Mutation p.T323N 0.21 deleterious(0.02) benign(0.178) TCGA-37-A5EN-01 11 64714895 64714895 G A C11orf85 Nonsense_Mutation p.R142* 0.37 TCGA-37-A5EN-01 11 65293512 65293512 G T SCYL1 Missense_Mutation p.V125L 0.14 tolerated(0.1) benign(0.208) TCGA-37-A5EN-01 11 67372250 67372250 A G C11orf72 Silent p.C97C 0.10 TCGA-37-A5EN-01 11 70319166 70319166 C G SHANK2 Missense_Mutation p.W1787C 0.25 deleterious(0) probably_damaging(0.926) TCGA-37-A5EN-01 11 8251907 8251907 C A LMO1 Missense_Mutation p.R57L 0.18 deleterious(0) possibly_damaging(0.66) TCGA-37-A5EN-01 11 85397123 85397123 C T CCDC89 Silent p.P17P 0.09 TCGA-37-A5EN-01 11 92616356 92616356 C A FAT3 Missense_Mutation p.S4245Y 0.05 possibly_damaging(0.786) TCGA-37-A5EN-01 12 11175022 11175022 G C TAS2R19 Missense_Mutation p.A50G 0.51 tolerated(0.09) possibly_damaging(0.533) TCGA-37-A5EN-01 12 114832604 114832604 C A TBX5 Missense_Mutation p.C202F 0.36 deleterious(0.02) benign(0.406) TCGA-37-A5EN-01 12 46320590 46320590 C G SCAF11 Missense_Mutation p.R965P 0.26 deleterious(0) probably_damaging(0.947) TCGA-37-A5EN-01 12 49419998 49419998 C A KMT2D Nonsense_Mutation p.E5251* 0.28 TCGA-37-A5EN-01 12 50037923 50037923 A T PRPF40B Missense_Mutation p.E876V 0.05 deleterious_low_confidence(0) possibly_damaging(0.888) TCGA-37-A5EN-01 12 5020971 5020971 C G KCNA1 Missense_Mutation p.P143A 0.25 tolerated(0.09) benign(0.01) TCGA-37-A5EN-01 12 50367204 50367204 C T AQP6 Missense_Mutation p.P83L 0.29 deleterious(0) probably_damaging(0.998) TCGA-37-A5EN-01 12 70960476 70960476 A G PTPRB Missense_Mutation p.S1215P 0.30 tolerated(0.36) benign(0.007) TCGA-37-A5EN-01 12 72017319 72017319 C T ZFC3H1 Missense_Mutation p.R1522Q 0.15 tolerated(0.06) probably_damaging(0.978) TCGA-37-A5EN-01 12 78334128 78334128 A T NAV3 Silent p.L91L 0.21 TCGA-37-A5EN-01 12 80651743 80651743 T C OTOGL Missense_Mutation p.L608P 0.39 deleterious(0) probably_damaging(1) TCGA-37-A5EN-01 12 81101990 81101990 C T MYF6 Silent p.P164P 0.06 TCGA-37-A5EN-01 12 93244904 93244904 G A EEA1 Nonsense_Mutation p.Q261* 0.26 TCGA-37-A5EN-01 13 103514012 103514012 A G BIVM-ERCC5 Silent p.V702V 0.05 TCGA-37-A5EN-01 13 109318335 109318335 C T MYO16 Missense_Mutation p.R22C 0.20 deleterious(0) probably_damaging(1) TCGA-37-A5EN-01 13 114005168 114005168 C T GRTP1 Missense_Mutation p.C154Y 0.14 deleterious(0) probably_damaging(0.988) TCGA-37-A5EN-01 13 32698930 32698930 A T FRY Splice_Site p.X212_splice 0.24 TCGA-37-A5EN-01 13 43788244 43788244 T A ENOX1 Missense_Mutation p.E605V 0.38 deleterious(0) possibly_damaging(0.852) TCGA-37-A5EN-01 13 43900611 43900611 C A ENOX1 Missense_Mutation p.D363Y 0.34 deleterious(0) probably_damaging(0.968) TCGA-37-A5EN-01 13 43900612 43900612 C A ENOX1 Missense_Mutation p.W362C 0.35 deleterious(0) probably_damaging(0.968) TCGA-37-A5EN-01 13 52972013 52972013 C A THSD1 Silent p.V125V 0.31 TCGA-37-A5EN-01 13 74420394 74420394 C G KLF12 Missense_Mutation p.E80D 0.15 deleterious(0.04) probably_damaging(0.97) TCGA-37-A5EN-01 14 103571404 103571404 G A EXOC3L4 Silent p.E487E 0.17 TCGA-37-A5EN-01 14 105414650 105414650 C A AHNAK2 Missense_Mutation p.G2380C 0.32 benign(0.067) TCGA-37-A5EN-01 14 105931081 105931081 A G MTA1 Missense_Mutation p.Y472C 0.27 tolerated(0.14) probably_damaging(0.935) TCGA-37-A5EN-01 14 20585930 20585930 T A OR4K17 Missense_Mutation p.V122E 0.28 deleterious(0) possibly_damaging(0.549) TCGA-37-A5EN-01 14 24654427 24654427 T C IPO4 Missense_Mutation p.K457R 0.32 tolerated(0.21) benign(0.239) TCGA-37-A5EN-01 14 25077578 25077578 G A GZMH Silent p.R32R 0.22 TCGA-37-A5EN-01 14 34270284 34270284 C A NPAS3 Missense_Mutation p.A924E 0.56 deleterious_low_confidence(0.01) benign(0.093) TCGA-37-A5EN-01 14 37132251 37132251 T A PAX9 Missense_Mutation p.C52S 0.25 deleterious(0) probably_damaging(0.977) TCGA-37-A5EN-01 14 47120307 47120307 A C RPL10L Silent p.V211V 0.26 TCGA-37-A5EN-01 14 52735096 52735096 C G PTGDR Silent p.V188V 0.09 TCGA-37-A5EN-01 14 64557721 64557721 A T SYNE2 Silent p.I3977I 0.18 TCGA-37-A5EN-01 14 70712550 70712550 C A ADAM21P1 RNA 0.11 TCGA-37-A5EN-01 14 71267725 71267725 C A MAP3K9 Missense_Mutation p.R160L 0.22 deleterious(0) probably_damaging(0.99) TCGA-37-A5EN-01 14 89178750 89178750 C T EML5 Missense_Mutation p.V508I 0.12 deleterious(0.01) probably_damaging(0.968) TCGA-37-A5EN-01 15 20170173 20170173 A T IGHV1OR15-9 Silent p.P33P 0.24 TCGA-37-A5EN-01 15 24923098 24923098 T A NPAP1 Missense_Mutation p.I695N 0.16 tolerated(0.33) benign(0.046) TCGA-37-A5EN-01 15 33916028 33916028 G T RYR3 Missense_Mutation p.G793V 0.53 probably_damaging(1) TCGA-37-A5EN-01 15 43438735 43438735 A T TMEM62 Missense_Mutation p.H174L 0.13 deleterious(0) benign(0.106) TCGA-37-A5EN-01 15 43712797 43712797 G A TP53BP1 Missense_Mutation p.R1463C 0.14 deleterious(0.01) probably_damaging(0.969) TCGA-37-A5EN-01 15 45981271 45981271 G T SQRDL Missense_Mutation p.G384V 0.12 deleterious(0) benign(0.273) TCGA-37-A5EN-01 15 54685326 54685326 G T UNC13C Silent p.L1598L 0.15 TCGA-37-A5EN-01 15 66180110 66180110 G A RAB11A Missense_Mutation p.V195M 0.11 tolerated_low_confidence(0.14) benign(0.017) TCGA-37-A5EN-01 15 69348921 69348921 C T NOX5 Missense_Mutation p.A728V 0.07 tolerated(0.08) probably_damaging(0.948) TCGA-37-A5EN-01 15 73024042 73024042 G A BBS4 Missense_Mutation p.M337I 0.49 tolerated(0.21) benign(0.006) TCGA-37-A5EN-01 15 83502216 83502216 G C WHAMM Missense_Mutation p.Q786H 0.11 deleterious(0.01) probably_damaging(0.935) TCGA-37-A5EN-01 15 90293274 90293274 C T MESP1 3'UTR 0.20 TCGA-37-A5EN-01 16 21994576 21994576 T G UQCRC2 3'UTR 0.50 TCGA-37-A5EN-01 16 24578657 24578657 G T RBBP6 Missense_Mutation p.A595S 0.29 deleterious_low_confidence(0) possibly_damaging(0.515) TCGA-37-A5EN-01 16 28922267 28922267 A G RABEP2 Missense_Mutation p.L344P 0.43 deleterious(0) benign(0.384) TCGA-37-A5EN-01 16 31097330 31097330 G A PRSS53 Nonsense_Mutation p.Q280* 0.24 TCGA-37-A5EN-01 16 4432283 4432283 G A VASN Missense_Mutation p.E469K 0.23 tolerated(0.55) benign(0.041) TCGA-37-A5EN-01 16 51173254 51173254 A G SALL1 Missense_Mutation p.L960S 0.10 tolerated(0.57) benign(0.075) TCGA-37-A5EN-01 16 56669862 56669862 G A MT1M 3'Flank 0.29 TCGA-37-A5EN-01 16 633465 633465 A T PIGQ Missense_Mutation p.Q705L 0.16 deleterious_low_confidence(0) benign(0) TCGA-37-A5EN-01 16 70852338 70852338 C G HYDIN Missense_Mutation p.E4855D 0.24 possibly_damaging(0.801) TCGA-37-A5EN-01 16 739385 739385 C T WDR24 Missense_Mutation p.D86N 0.40 deleterious(0) possibly_damaging(0.828) TCGA-37-A5EN-01 16 76528878 76528878 G C CNTNAP4 Missense_Mutation p.D645H 0.35 deleterious(0) benign(0.015) TCGA-37-A5EN-01 16 76573693 76573693 G A CNTNAP4 Missense_Mutation p.D1027N 0.17 tolerated(0.69) probably_damaging(0.992) TCGA-37-A5EN-01 16 89967153 89967153 G A TCF25 Silent p.R444R 0.30 TCGA-37-A5EN-01 17 10427836 10427836 C T MYH2 Missense_Mutation p.A1708T 0.43 deleterious(0.01) benign(0.183) TCGA-37-A5EN-01 17 28380398 28380398 C T EFCAB5 Missense_Mutation p.H476Y 0.17 tolerated(0.18) benign(0.005) TCGA-37-A5EN-01 17 29645892 29645892 A G EVI2A Missense_Mutation p.I70T 0.37 tolerated(1) benign(0.027) TCGA-37-A5EN-01 17 31350878 31350878 C G ASIC2 Splice_Site p.X450_splice 0.23 TCGA-37-A5EN-01 17 33802505 33802505 C T SLFN12L Splice_Site p.X402_splice 0.28 TCGA-37-A5EN-01 17 33954664 33954664 G A AP2B1 Silent p.L358L 0.08 TCGA-37-A5EN-01 17 39274465 39274465 A T KRTAP4-11 Missense_Mutation p.C35S 0.32 deleterious(0.04) unknown(0) TCGA-37-A5EN-01 17 40010892 40010892 C A KLHL11 Silent p.V409V 0.33 TCGA-37-A5EN-01 17 40474475 40474475 C T STAT3 Silent p.K642K 0.04 TCGA-37-A5EN-01 17 41002452 41002452 C T AOC2 3'UTR 0.35 TCGA-37-A5EN-01 17 41158874 41158874 T C IFI35 5'UTR 0.42 TCGA-37-A5EN-01 17 56620845 56620845 C G C17orf47 Missense_Mutation p.D235H 0.36 deleterious(0) possibly_damaging(0.702) TCGA-37-A5EN-01 17 58256778 58256778 C T USP32 Silent p.P1551P 0.35 TCGA-37-A5EN-01 17 7577548 7577548 C A TP53 Missense_Mutation p.G245C 0.43 deleterious(0) probably_damaging(1) TCGA-37-A5EN-01 17 9479947 9479947 A G WDR16 5'UTR 0.64 TCGA-37-A5EN-01 18 2945680 2945680 C A LPIN2 Intron 0.25 TCGA-37-A5EN-01 18 39550443 39550443 G T PIK3C3 Intron 0.24 TCGA-37-A5EN-01 18 72999005 72999005 G T TSHZ1 Missense_Mutation p.G503V 0.38 deleterious(0) probably_damaging(1) TCGA-37-A5EN-01 19 10602875 10602875 C A KEAP1 Missense_Mutation p.D235Y 0.09 deleterious(0.01) benign(0.15) TCGA-37-A5EN-01 19 12637770 12637770 C T ZNF564 Missense_Mutation p.M384I 0.05 tolerated(0.15) benign(0.115) TCGA-37-A5EN-01 19 17937659 17937659 C T JAK3 Missense_Mutation p.A1090T 0.05 tolerated(0.58) benign(0.004) TCGA-37-A5EN-01 19 18174774 18174774 C G IL12RB1 Silent p.L510L 0.29 TCGA-37-A5EN-01 19 21990774 21990774 G C ZNF43 Missense_Mutation p.L689V 0.42 tolerated(0.55) benign(0.119) TCGA-37-A5EN-01 19 22940843 22940843 C A ZNF99 Missense_Mutation p.C623F 0.35 deleterious(0.01) probably_damaging(0.984) TCGA-37-A5EN-01 19 36139801 36139801 G A COX6B1 Intron 0.22 TCGA-37-A5EN-01 19 51274213 51274213 C T GPR32 Missense_Mutation p.T119I 0.62 tolerated(0.22) benign(0.063) TCGA-37-A5EN-01 19 52537779 52537779 T G ZNF432 Missense_Mutation p.K385Q 0.08 deleterious(0) probably_damaging(0.986) TCGA-37-A5EN-01 19 54410071 54410071 C A PRKCG Silent p.G672G 0.48 TCGA-37-A5EN-01 19 6477464 6477464 G T DENND1C Silent p.T124T 0.44 TCGA-37-A5EN-01 19 9087295 9087295 C A MUC16 Missense_Mutation p.S1507I 0.49 unknown(0) TCGA-37-A5EN-01 1 101490923 101490923 C G DPH5 Missense_Mutation p.C26S 0.57 tolerated(0.36) benign(0.1) TCGA-37-A5EN-01 1 115398122 115398122 C - SYCP1 Frame_Shift_Del p.P13Rfs*11 0.33 TCGA-37-A5EN-01 1 145474075 145474076 - A ANKRD34A Frame_Shift_Ins p.W250Mfs*14 0.10 TCGA-37-A5EN-01 1 145562219 145562219 G C ANKRD35 Missense_Mutation p.R636P 0.05 deleterious(0.01) possibly_damaging(0.859) TCGA-37-A5EN-01 1 149871690 149871691 - G BOLA1 Frame_Shift_Ins p.A28Gfs*38 0.29 TCGA-37-A5EN-01 1 151798477 151798477 G A RORC Intron 0.20 TCGA-37-A5EN-01 1 152079946 152079946 C T TCHH Missense_Mutation p.G1916D 0.31 probably_damaging(0.931) TCGA-37-A5EN-01 1 156617837 156617837 G A BCAN Missense_Mutation p.R235Q 0.14 deleterious(0) probably_damaging(0.99) TCGA-37-A5EN-01 1 158449725 158449725 C A OR10R2 Missense_Mutation p.Q20K 0.30 tolerated(0.42) benign(0.003) TCGA-37-A5EN-01 1 158747257 158747257 T A OR6N2 Missense_Mutation p.T57S 0.27 tolerated(0.06) benign(0.017) TCGA-37-A5EN-01 1 19484422 19484422 G A UBR4 Nonsense_Mutation p.Q1883* 0.07 TCGA-37-A5EN-01 1 215807816 215807816 C T USH2A Silent p.P5094P 0.36 TCGA-37-A5EN-01 1 215821951 215821951 G T USH2A Missense_Mutation p.S4834Y 0.28 possibly_damaging(0.722) TCGA-37-A5EN-01 1 226076635 226076635 G T LEFTY1 Missense_Mutation p.D44E 0.12 tolerated(0.46) benign(0.015) TCGA-37-A5EN-01 1 231075169 231075169 T C TTC13 Missense_Mutation p.Y288C 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-37-A5EN-01 1 237972279 237972279 T A RYR2 Missense_Mutation p.Y4793N 0.23 probably_damaging(0.961) TCGA-37-A5EN-01 1 240071826 240071826 T A CHRM3 Missense_Mutation p.S359T 0.47 tolerated(0.56) benign(0.004) TCGA-37-A5EN-01 1 247694838 247694838 G A OR2C3 3'UTR 0.44 TCGA-37-A5EN-01 1 248128776 248128776 C A OR2AK2 Missense_Mutation p.T48N 0.17 tolerated(0.06) benign(0.131) TCGA-37-A5EN-01 1 34083129 34083129 A G CSMD2 Silent p.S1932S 0.58 TCGA-37-A5EN-01 1 76388027 76388027 T C ASB17 Missense_Mutation p.Y140C 0.29 deleterious_low_confidence(0.04) possibly_damaging(0.759) TCGA-37-A5EN-01 1 7863194 7863194 G T PER3 Missense_Mutation p.M319I 0.58 deleterious(0.01) benign(0.322) TCGA-37-A5EN-01 1 93302871 93302871 G C RPL5 Intron 0.08 TCGA-37-A5EN-01 20 13561560 13561561 CA T TASP1 Frame_Shift_Del p.G158Afs*8 0.25 TCGA-37-A5EN-01 20 25666240 25666240 C T ZNF337 Nonsense_Mutation p.W71* 0.12 TCGA-37-A5EN-01 20 32354682 32354682 G A ZNF341 Silent p.A409A 0.30 TCGA-37-A5EN-01 20 33001581 33001581 G A ITCH Missense_Mutation p.G124D 0.26 tolerated(0.5) benign(0.186) TCGA-37-A5EN-01 20 45717965 45717965 G A EYA2 Missense_Mutation p.R250Q 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-37-A5EN-01 20 5548132 5548132 T G GPCPD1 Missense_Mutation p.L408F 0.08 deleterious(0) probably_damaging(1) TCGA-37-A5EN-01 20 5923139 5923139 T C TRMT6 Missense_Mutation p.M321V 0.35 tolerated(0.27) benign(0.001) TCGA-37-A5EN-01 21 22710821 22710821 T G NCAM2 Silent p.A337A 0.78 TCGA-37-A5EN-01 22 16287480 16287480 C A POTEH Missense_Mutation p.G136C 0.11 deleterious_low_confidence(0.02) possibly_damaging(0.897) TCGA-37-A5EN-01 22 26422785 26422785 A G MYO18B Missense_Mutation p.Q2282R 0.24 tolerated(0.26) benign(0.334) TCGA-37-A5EN-01 22 46722450 46722450 T C GTSE1 Silent p.L541L 0.23 TCGA-37-A5EN-01 2 106729129 106729129 C A UXS1 Silent p.L284L 0.37 TCGA-37-A5EN-01 2 109389368 109389368 G T RANBP2 Missense_Mutation p.V2720F 0.11 deleterious(0.03) probably_damaging(0.945) TCGA-37-A5EN-01 2 114195313 114195313 G C CBWD2 5'UTR 0.24 TCGA-37-A5EN-01 2 116594083 116594083 C G DPP10 Missense_Mutation p.A688G 0.40 tolerated(0.19) benign(0.007) TCGA-37-A5EN-01 2 11758826 11758826 T C GREB1 Silent p.S1275S 0.12 TCGA-37-A5EN-01 2 128389853 128389853 G A MYO7B Nonsense_Mutation p.W1735* 0.21 TCGA-37-A5EN-01 2 149803480 149803480 G C KIF5C Missense_Mutation p.E219D 0.25 tolerated(0.14) benign(0.114) TCGA-37-A5EN-01 2 162036223 162036223 G T TANK Missense_Mutation p.R17L 0.17 deleterious(0) probably_damaging(0.999) TCGA-37-A5EN-01 2 165365358 165365358 G T GRB14 Missense_Mutation p.P274Q 0.19 deleterious(0) probably_damaging(0.993) TCGA-37-A5EN-01 2 166201386 166201386 G T SCN2A Missense_Mutation p.V962F 0.10 tolerated(0.07) possibly_damaging(0.844) TCGA-37-A5EN-01 2 166245741 166245741 G A SCN2A Missense_Mutation p.A1809T 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-37-A5EN-01 2 167262718 167262718 A G SCN7A Missense_Mutation p.F1474S 0.08 tolerated(0.12) benign(0.011) TCGA-37-A5EN-01 2 169783763 169783763 A T ABCB11 Missense_Mutation p.I1174N 0.09 deleterious(0) probably_damaging(1) TCGA-37-A5EN-01 2 179496009 179496009 G T TTN Missense_Mutation p.T14589K 0.24 TCGA-37-A5EN-01 2 179647737 179647737 T C TTN Missense_Mutation p.I966V 0.58 TCGA-37-A5EN-01 2 18736449 18736449 C A RDH14 3'UTR 0.16 TCGA-37-A5EN-01 2 188368484 188368484 T G TFPI Silent p.T4T 0.21 TCGA-37-A5EN-01 2 200137189 200137189 C G SATB2 Silent p.S649S 0.11 TCGA-37-A5EN-01 2 20101572 20101572 G C TTC32 Missense_Mutation p.A15G 0.04 deleterious(0) probably_damaging(0.999) TCGA-37-A5EN-01 2 209212743 209212743 T C PIKFYVE Silent p.P1790P 0.17 TCGA-37-A5EN-01 2 215278911 215278911 G A VWC2L 5'UTR 0.12 TCGA-37-A5EN-01 2 220022375 220022375 G T NHEJ1 Missense_Mutation p.A70E 0.24 tolerated(0.41) benign(0.012) TCGA-37-A5EN-01 2 233745952 233745952 G - NGEF Frame_Shift_Del p.Q616Rfs*16 0.31 TCGA-37-A5EN-01 2 27566328 27566328 T C GTF3C2 Missense_Mutation p.N32D 0.18 tolerated_low_confidence(0.42) benign(0) TCGA-37-A5EN-01 2 29297128 29297128 G T C2orf71 5'Flank 0.06 TCGA-37-A5EN-01 2 32725160 32725160 C G BIRC6 Silent p.A3005A 0.54 TCGA-37-A5EN-01 2 38796340 38796340 G C HNRNPLL Missense_Mutation p.P446A 0.14 tolerated(0.46) probably_damaging(0.998) TCGA-37-A5EN-01 2 42588316 42588316 G A COX7A2L 5'UTR 0.59 TCGA-37-A5EN-01 2 49381427 49381427 G T FSHR Missense_Mutation p.L44I 0.23 tolerated(0.48) benign(0.003) TCGA-37-A5EN-01 2 79384409 79384409 C G REG3A Missense_Mutation p.R157S 0.46 deleterious(0.01) benign(0.14) TCGA-37-A5EN-01 2 89292204 89292204 C A IGKV1-8 Silent p.R23R 0.14 TCGA-37-A5EN-01 2 89976226 89976226 G A IGKV2D-30 Missense_Mutation p.V33I 0.11 tolerated(0.17) benign(0.019) TCGA-37-A5EN-01 2 95952596 95952596 G A PROM2 Silent p.P695P 0.09 TCGA-37-A5EN-01 2 96861288 96861288 C T STARD7 Splice_Site p.X97_splice 0.45 TCGA-37-A5EN-01 3 111849411 111849411 T G GCSAM Intron 0.11 TCGA-37-A5EN-01 3 119190245 119190245 A G POGLUT1 Missense_Mutation p.Y89C 0.23 deleterious(0) probably_damaging(0.997) TCGA-37-A5EN-01 3 128532307 128532307 G T RAB7A 3'UTR 0.22 TCGA-37-A5EN-01 3 129262086 129262086 G A H1FOO Missense_Mutation p.D9N 0.40 tolerated(0.8) unknown(0) TCGA-37-A5EN-01 3 13921371 13921371 C T WNT7A 5'UTR 0.43 TCGA-37-A5EN-01 3 164735577 164735577 G A SI Missense_Mutation p.P1202L 0.30 deleterious(0) probably_damaging(0.996) TCGA-37-A5EN-01 3 169540512 169540512 G T LRRIQ4 Missense_Mutation p.R268L 0.44 tolerated(0.32) benign(0.069) TCGA-37-A5EN-01 3 178525177 178525177 C A KCNMB2 5'UTR 0.20 TCGA-37-A5EN-01 3 178968819 178968819 C T KCNMB3 Intron 0.06 TCGA-37-A5EN-01 3 184009860 184009860 C T ECE2 Missense_Mutation p.S829L 0.07 tolerated(0.05) possibly_damaging(0.659) TCGA-37-A5EN-01 3 3143398 3143398 A G IL5RA Silent p.S115S 0.45 TCGA-37-A5EN-01 3 3221345 3221345 G T CRBN Missense_Mutation p.D9E 0.09 tolerated_low_confidence(0.3) benign(0.001) TCGA-37-A5EN-01 3 38674536 38674536 C A SCN5A Missense_Mutation p.S88I 0.46 tolerated(0.26) probably_damaging(0.986) TCGA-37-A5EN-01 3 52557465 52557465 A C STAB1 Missense_Mutation p.E2388A 0.51 deleterious(0.01) probably_damaging(0.936) TCGA-37-A5EN-01 3 93761879 93761879 A G ARL13B Silent p.R273R 0.55 TCGA-37-A5EN-01 4 10566328 10566328 C T CLNK Silent p.Q122Q 0.33 TCGA-37-A5EN-01 4 106156087 106156087 G C TET2 Missense_Mutation p.E330Q 0.71 tolerated(0.22) benign(0.039) TCGA-37-A5EN-01 4 126389957 126389957 G A FAT4 Missense_Mutation p.A4064T 0.46 benign(0.012) TCGA-37-A5EN-01 4 155160444 155160444 G C DCHS2 Missense_Mutation p.P2002R 0.53 deleterious(0) probably_damaging(0.971) TCGA-37-A5EN-01 4 248138 248138 C G ZNF876P RNA 0.35 TCGA-37-A5EN-01 4 3319476 3319476 G A RGS12 Missense_Mutation p.V527M 0.19 tolerated(0.3) benign(0.033) TCGA-37-A5EN-01 4 71555423 71555423 C T UTP3 Silent p.S343S 0.07 TCGA-37-A5EN-01 4 73956758 73956758 T A ANKRD17 Missense_Mutation p.Q2196L 0.12 benign(0.002) TCGA-37-A5EN-01 4 94690516 94690516 C A GRID2 Missense_Mutation p.A839D 0.33 deleterious(0) probably_damaging(0.995) TCGA-37-A5EN-01 5 140167376 140167376 G C PCDHA1 Missense_Mutation p.E501Q 0.40 deleterious_low_confidence(0) possibly_damaging(0.889) TCGA-37-A5EN-01 5 140711037 140711037 C A PCDHGA1 Silent p.L262L 0.52 TCGA-37-A5EN-01 5 140718644 140718644 C T PCDHGA2 Missense_Mutation p.R36W 0.05 deleterious_low_confidence(0) possibly_damaging(0.849) TCGA-37-A5EN-01 5 147028039 147028039 T C JAKMIP2 Splice_Site p.X280_splice 0.59 TCGA-37-A5EN-01 5 150056486 150056486 C T MYOZ3 3'UTR 0.33 TCGA-37-A5EN-01 5 21752220 21752220 G T CDH12 Missense_Mutation p.Q671K 0.47 deleterious(0.01) possibly_damaging(0.569) TCGA-37-A5EN-01 5 35954335 35954335 A T UGT3A1 Missense_Mutation p.L514Q 0.53 deleterious(0.02) probably_damaging(0.996) TCGA-37-A5EN-01 5 7706897 7706897 G T ADCY2 Missense_Mutation p.V384L 0.48 deleterious(0) probably_damaging(0.989) TCGA-37-A5EN-01 5 80626326 80626326 G A ACOT12 Missense_Mutation p.P519S 0.07 tolerated(0.15) benign(0.295) TCGA-37-A5EN-01 5 82817788 82817788 A C VCAN Silent p.S1221S 0.05 TCGA-37-A5EN-01 5 94956716 94956716 C A GPR150 Missense_Mutation p.T246K 0.31 deleterious(0.04) benign(0.111) TCGA-37-A5EN-01 6 108985265 108985265 G - FOXO3 Frame_Shift_Del p.S411Afs*30 0.18 TCGA-37-A5EN-01 6 11768500 11768500 C A ADTRP Silent p.L108L 0.08 TCGA-37-A5EN-01 6 132031731 132031731 C A CTAGE9 Nonsense_Mutation p.E143* 0.35 TCGA-37-A5EN-01 6 152787137 152787137 T A SYNE1 Missense_Mutation p.Y570F 0.14 possibly_damaging(0.8) TCGA-37-A5EN-01 6 159457606 159457606 A G TAGAP Silent p.N483N 0.04 TCGA-37-A5EN-01 6 167752193 167752193 A T TTLL2 Missense_Mutation p.T36S 0.23 tolerated_low_confidence(0.46) benign(0.064) TCGA-37-A5EN-01 6 167754836 167754836 C T TTLL2 Missense_Mutation p.A483V 0.16 tolerated(0.18) benign(0.038) TCGA-37-A5EN-01 6 24861252 24861252 T A FAM65B Missense_Mutation p.I193F 0.50 tolerated(0.24) benign(0.059) TCGA-37-A5EN-01 6 29574234 29574234 C G GABBR1 Missense_Mutation p.D749H 0.09 deleterious(0.03) probably_damaging(0.968) TCGA-37-A5EN-01 6 37299084 37299084 A G TBC1D22B 3'UTR 0.44 TCGA-37-A5EN-01 6 39847092 39847092 C A DAAM2 Missense_Mutation p.P562T 0.24 tolerated(0.05) probably_damaging(0.981) TCGA-37-A5EN-01 6 5771799 5771799 G C FARS2 3'Flank 0.80 TCGA-37-A5EN-01 6 90529415 90529415 G T MDN1 5'UTR 0.32 TCGA-37-A5EN-01 7 11581169 11581169 G T THSD7A Missense_Mutation p.P567T 0.49 deleterious(0.05) probably_damaging(0.978) TCGA-37-A5EN-01 7 116166701 116166701 G T CAV1 Silent p.L51L 0.34 TCGA-37-A5EN-01 7 138602058 138602058 G A KIAA1549 Missense_Mutation p.P772S 0.20 tolerated(1) benign(0.001) TCGA-37-A5EN-01 7 140221832 140221832 C G DENND2A Missense_Mutation p.G912R 0.42 deleterious(0) probably_damaging(0.998) TCGA-37-A5EN-01 7 141618680 141618680 T G OR9A4 Missense_Mutation p.L2W 0.10 deleterious(0) possibly_damaging(0.711) TCGA-37-A5EN-01 7 150733718 150733718 C A ABCB8 Missense_Mutation p.A400D 0.39 deleterious(0) probably_damaging(0.962) TCGA-37-A5EN-01 7 150767303 150767303 G T SLC4A2 Missense_Mutation p.R440L 0.23 deleterious(0.02) probably_damaging(1) TCGA-37-A5EN-01 7 154738228 154738228 C T PAXIP1 Missense_Mutation p.G1043S 0.33 tolerated(0.12) unknown(0) TCGA-37-A5EN-01 7 21847506 21847506 A G DNAH11 Missense_Mutation p.I3398V 0.21 benign(0.003) TCGA-37-A5EN-01 7 32209420 32209420 T C PDE1C Silent p.E95E 0.28 TCGA-37-A5EN-01 7 38305025 38305025 G C TRGC1 Missense_Mutation p.H86D 0.06 deleterious(0) probably_damaging(0.948) TCGA-37-A5EN-01 7 56155325 56155325 G C PHKG1 Missense_Mutation p.D76E 0.22 tolerated(0.95) possibly_damaging(0.808) TCGA-37-A5EN-01 7 57529395 57529395 T A ZNF716 Missense_Mutation p.C410S 0.21 deleterious(0) possibly_damaging(0.796) TCGA-37-A5EN-01 7 75221693 75221693 C G HIP1 Silent p.P108P 0.37 TCGA-37-A5EN-01 7 82579672 82579672 T A PCLO Missense_Mutation p.K3411I 0.31 unknown(0) TCGA-37-A5EN-01 7 88965368 88965368 C A ZNF804B Missense_Mutation p.N1024K 0.15 tolerated(0.11) benign(0.018) TCGA-37-A5EN-01 7 99956517 99956517 A T PILRB Missense_Mutation p.H90L 0.32 deleterious(0) possibly_damaging(0.741) TCGA-37-A5EN-01 8 101083624 101083624 C T RGS22 Missense_Mutation p.M189I 0.27 tolerated(0.05) benign(0.113) TCGA-37-A5EN-01 8 113420611 113420611 C G CSMD3 Missense_Mutation p.Q1847H 0.35 deleterious(0.02) benign(0.036) TCGA-37-A5EN-01 8 113960042 113960042 C G CSMD3 Silent p.G495G 0.35 TCGA-37-A5EN-01 8 2796170 2796170 T A CSMD1 Missense_Mutation p.K3544N 0.40 probably_damaging(0.997) TCGA-37-A5EN-01 8 27995336 27995336 G A ELP3 Missense_Mutation p.S343N 0.15 tolerated(0.5) benign(0.001) TCGA-37-A5EN-01 8 38827178 38827178 G T PLEKHA2 Missense_Mutation p.E385D 0.48 tolerated(0.39) benign(0.005) TCGA-37-A5EN-01 8 72983975 72983975 T G TRPA1 Missense_Mutation p.E80A 0.16 deleterious(0.04) benign(0.156) TCGA-37-A5EN-01 8 77765853 77765853 A T ZFHX4 Missense_Mutation p.R2232S 0.41 possibly_damaging(0.593) TCGA-37-A5EN-01 8 8175832 8175832 G A SGK223 Silent p.I1351I 0.28 TCGA-37-A5EN-01 8 85785616 85785616 G A RALYL Silent p.Q236Q 0.36 TCGA-37-A5EN-01 8 87738856 87738856 C A CNGB3 Missense_Mutation p.D81Y 0.16 deleterious(0.03) benign(0.002) TCGA-37-A5EN-01 9 101800988 101800988 G C COL15A1 Silent p.S816S 0.11 TCGA-37-A5EN-01 9 110081156 110081156 T C RAD23B Missense_Mutation p.L226S 0.12 deleterious(0) possibly_damaging(0.77) TCGA-37-A5EN-01 9 125512190 125512190 C T OR1L6 Missense_Mutation p.P22S 0.20 tolerated(0.07) possibly_damaging(0.886) TCGA-37-A5EN-01 9 12694159 12694159 C T TYRP1 Missense_Mutation p.R55C 0.65 tolerated(0.05) possibly_damaging(0.453) TCGA-37-A5EN-01 9 131550657 131550657 T C TBC1D13 Missense_Mutation p.L23S 0.07 deleterious(0) possibly_damaging(0.862) TCGA-37-A5EN-01 9 132565530 132565530 G T TOR1B Silent p.L13L 0.47 TCGA-37-A5EN-01 9 32408557 32408557 G A ACO1 Silent p.V104V 0.23 TCGA-37-A5EN-01 9 32408630 32408630 C A ACO1 Missense_Mutation p.Q129K 0.16 deleterious(0.01) benign(0.23) TCGA-37-A5EN-01 9 70177683 70177683 C T FOXD4L5 Missense_Mutation p.E101K 0.12 tolerated(0.24) benign(0.034) TCGA-37-A5EN-01 9 74840648 74840648 G A GDA Missense_Mutation p.S257N 0.22 tolerated(0.23) benign(0) TCGA-37-A5EN-01 9 88880950 88880950 C A ISCA1 3'UTR 0.25 TCGA-37-A5EN-01 X 105153044 105153044 C T NRK Silent p.L472L 0.62 TCGA-37-A5EN-01 X 119402126 119402126 C A TMEM255A Silent p.L288L 0.55 TCGA-37-A5EN-01 X 128873149 128873149 C T XPNPEP2 5'UTR 0.76 TCGA-37-A5EN-01 X 136652339 136652339 G T ZIC3 3'UTR 0.60 TCGA-37-A5EN-01 X 140985197 140985197 T C MAGEC3 Silent p.L551L 0.17 TCGA-37-A5EN-01 X 142717566 142717566 A G SLITRK4 Silent p.Y453Y 0.68 TCGA-37-A5EN-01 X 153543653 153543653 G A TKTL1 Missense_Mutation p.R332H 0.09 deleterious(0.02) benign(0.365) TCGA-37-A5EN-01 X 153706704 153706704 G A LAGE3 Missense_Mutation p.H79Y 0.69 tolerated(1) benign(0.09) TCGA-37-A5EN-01 X 24197666 24197666 C T ZFX Missense_Mutation p.S142F 0.09 deleterious(0.03) benign(0.353) TCGA-37-A5EN-01 X 48825641 48825641 A T KCND1 Nonsense_Mutation p.Y346* 0.35 TCGA-37-A5EN-01 X 54099622 54099622 C T FAM120C Silent p.K1045K 0.44 TCGA-37-A5EN-01 X 77224899 77224899 C A PGAM4 Silent p.L79L 0.11 TCGA-37-A5EN-01 X 8434342 8434342 T A VCX3B Missense_Mutation p.V220E 0.04 tolerated(0.07) unknown(0) TCGA-37-A5EN-01 X 91134191 91134191 C A PCDH11X Missense_Mutation p.S984R 0.21 deleterious(0.03) probably_damaging(0.93) TCGA-37-A5EN-01 X 91134204 91134204 T A PCDH11X Missense_Mutation p.Y989N 0.22 deleterious(0) probably_damaging(0.968) TCGA-37-A5EN-01 Y 4968667 4968667 C A PCDH11Y Missense_Mutation p.S1016R 0.68 tolerated(0.12) probably_damaging(0.937) TCGA-37-A5EN-01 Y 4968680 4968680 T A PCDH11Y Missense_Mutation p.Y1021N 0.72 deleterious(0) possibly_damaging(0.733) TCGA-39-5011-01 10 101802191 101802191 G T CPN1 Missense_Mutation p.P457H 0.29 deleterious_low_confidence(0) possibly_damaging(0.62) TCGA-39-5011-01 10 108367019 108367019 C A SORCS1 Missense_Mutation p.V1024L 0.32 tolerated(0.12) benign(0.101) TCGA-39-5011-01 10 108412203 108412203 C A SORCS1 Silent p.T804T 0.22 TCGA-39-5011-01 10 111631621 111631621 T C XPNPEP1 Splice_Site p.X485_splice 0.25 TCGA-39-5011-01 10 117823818 117823818 T C GFRA1 3'UTR 0.29 TCGA-39-5011-01 10 119805437 119805437 A G RAB11FIP2 Missense_Mutation p.Y80H 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-39-5011-01 10 12142255 12142255 G C DHTKD1 Missense_Mutation p.A584P 0.21 tolerated(0.14) benign(0.317) TCGA-39-5011-01 10 125447644 125447644 C A GPR26 Missense_Mutation p.H328N 0.19 tolerated(0.17) benign(0) TCGA-39-5011-01 10 134008426 134008426 G T DPYSL4 Missense_Mutation p.A131S 0.24 tolerated(0.71) benign(0.124) TCGA-39-5011-01 10 25887033 25887033 C A GPR158 Missense_Mutation p.D826E 0.22 tolerated(0.49) benign(0.003) TCGA-39-5011-01 10 26789963 26789963 G C APBB1IP Missense_Mutation p.D126H 0.24 tolerated(0.12) possibly_damaging(0.56) TCGA-39-5011-01 10 28971156 28971156 C A BAMBI Silent p.S203S 0.24 TCGA-39-5011-01 10 29580847 29580847 C A LYZL1 Silent p.A63A 0.12 TCGA-39-5011-01 10 34400366 34400366 C A PARD3 Missense_Mutation p.G1268C 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-39-5011-01 10 50574423 50574423 C A DRGX Missense_Mutation p.G182V 0.15 tolerated(0.16) benign(0.005) TCGA-39-5011-01 10 50901837 50901837 G T C10orf53 Nonsense_Mutation p.G39* 0.17 TCGA-39-5011-01 10 53893647 53893647 G T PRKG1 Missense_Mutation p.C328F 0.22 deleterious(0) probably_damaging(0.994) TCGA-39-5011-01 10 58117979 58117979 G A ZWINT Intron 0.24 TCGA-39-5011-01 10 64136373 64136373 G T ZNF365 Missense_Mutation p.G141W 0.25 deleterious(0.01) probably_damaging(0.992) TCGA-39-5011-01 10 64136374 64136374 G C ZNF365 Missense_Mutation p.G141A 0.25 tolerated(0.4) benign(0.138) TCGA-39-5011-01 10 68687264 68687264 C G LRRTM3 Missense_Mutation p.A197G 0.29 tolerated(0.05) benign(0.075) TCGA-39-5011-01 10 71020974 71020974 C T HKDC1 Missense_Mutation p.L766F 0.27 deleterious(0) probably_damaging(1) TCGA-39-5011-01 10 73464741 73464741 T C CDH23 Missense_Mutation p.M528T 0.22 tolerated(0.39) benign(0.438) TCGA-39-5011-01 10 8100426 8100426 C A GATA3 Missense_Mutation p.P134T 0.21 tolerated(0.21) possibly_damaging(0.646) TCGA-39-5011-01 10 88232467 88232467 G C WAPAL Missense_Mutation p.P599A 0.15 deleterious(0.04) probably_damaging(0.996) TCGA-39-5011-01 10 91163110 91163110 G C IFIT1 Missense_Mutation p.E360Q 0.18 deleterious(0) probably_damaging(0.989) TCGA-39-5011-01 10 93389745 93389745 C A PPP1R3C Missense_Mutation p.S298I 0.23 deleterious(0.01) benign(0.252) TCGA-39-5011-01 10 95360178 95360178 C A RBP4 Missense_Mutation p.W109C 0.26 deleterious(0.01) probably_damaging(0.984) TCGA-39-5011-01 10 95447162 95447162 T - FRA10AC1 Frame_Shift_Del p.G171Vfs*16 0.35 TCGA-39-5011-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.29 TCGA-39-5011-01 10 99342459 99342459 G T ANKRD2 Silent p.L311L 0.24 TCGA-39-5011-01 11 103866923 103866923 C G PDGFD Missense_Mutation p.R127T 0.23 tolerated(0.21) probably_damaging(0.999) TCGA-39-5011-01 11 110007637 110007637 G T ZC3H12C Nonsense_Mutation p.E91* 0.24 TCGA-39-5011-01 11 117651335 117651335 G T DSCAML1 Missense_Mutation p.N139K 0.32 deleterious(0) probably_damaging(1) TCGA-39-5011-01 11 117711899 117711899 C A FXYD6 Missense_Mutation p.S58I 0.26 deleterious(0) probably_damaging(0.988) TCGA-39-5011-01 11 117869462 117869462 C T IL10RA Silent p.I281I 0.09 TCGA-39-5011-01 11 118222356 118222356 G T CD3G Missense_Mutation p.Q151H 0.35 deleterious(0) probably_damaging(0.936) TCGA-39-5011-01 11 118443212 118443212 C T ARCN1 5'UTR 0.35 TCGA-39-5011-01 11 119148991 119148991 G T CBL Missense_Mutation p.C404F 0.28 deleterious(0) probably_damaging(1) TCGA-39-5011-01 11 120732806 120732806 C A GRIK4 Missense_Mutation p.H295N 0.29 tolerated(0.52) possibly_damaging(0.551) TCGA-39-5011-01 11 122733183 122733183 G A CRTAM Missense_Mutation p.E222K 0.19 tolerated(0.21) benign(0.424) TCGA-39-5011-01 11 123596786 123596786 C A ZNF202 Silent p.T622T 0.12 TCGA-39-5011-01 11 123676291 123676291 T G OR6M1 Missense_Mutation p.Y256S 0.18 deleterious(0) probably_damaging(0.995) TCGA-39-5011-01 11 123848006 123848006 G T OR10S1 Silent p.V131V 0.13 TCGA-39-5011-01 11 124294166 124294166 A T OR8B4 Missense_Mutation p.V201D 0.30 deleterious_low_confidence(0) possibly_damaging(0.678) TCGA-39-5011-01 11 130343181 130343181 G T ADAMTS15 Missense_Mutation p.R773L 0.16 deleterious(0.05) benign(0.249) TCGA-39-5011-01 11 15197503 15197503 C A INSC Silent p.I138I 0.22 TCGA-39-5011-01 11 22398185 22398185 T C SLC17A6 Silent p.C460C 0.30 TCGA-39-5011-01 11 28104717 28104717 T A KIF18A Missense_Mutation p.E383V 0.11 deleterious(0) possibly_damaging(0.826) TCGA-39-5011-01 11 28104719 28104719 T A KIF18A Silent p.A382A 0.11 TCGA-39-5011-01 11 30033434 30033434 C A KCNA4 Missense_Mutation p.E264D 0.22 tolerated(0.14) benign(0.078) TCGA-39-5011-01 11 30033833 30033833 C G KCNA4 Missense_Mutation p.E131D 0.16 tolerated_low_confidence(0.18) benign(0) TCGA-39-5011-01 11 30902755 30902755 C A DCDC1 Missense_Mutation p.R1725L 0.23 deleterious(0) benign(0.433) TCGA-39-5011-01 11 32610231 32610231 G T EIF3M Missense_Mutation p.K89N 0.18 deleterious(0) benign(0.285) TCGA-39-5011-01 11 33631385 33631385 C A KIAA1549L Missense_Mutation p.P1421T 0.21 deleterious(0.01) probably_damaging(0.991) TCGA-39-5011-01 11 4388734 4388734 C A OR52B4 Missense_Mutation p.Q264H 0.23 tolerated(1) benign(0.12) TCGA-39-5011-01 11 46334185 46334185 G T CREB3L1 Missense_Mutation p.R309L 0.12 deleterious(0) probably_damaging(0.974) TCGA-39-5011-01 11 47504291 47504291 C T CELF1 Missense_Mutation p.G241R 0.13 deleterious(0.02) probably_damaging(0.979) TCGA-39-5011-01 11 47690398 47690398 C G AGBL2 Missense_Mutation p.D737H 0.03 tolerated(0.12) benign(0.009) TCGA-39-5011-01 11 4903741 4903741 T A OR51T1 Silent p.L231L 0.09 TCGA-39-5011-01 11 55036816 55036816 G T TRIM48 Splice_Site 0.17 TCGA-39-5011-01 11 5510835 5510835 C A OR52D1 Missense_Mutation p.T300N 0.44 deleterious(0.03) probably_damaging(0.997) TCGA-39-5011-01 11 5536208 5536208 C A UBQLNL 3'UTR 0.29 TCGA-39-5011-01 11 55419074 55419074 G T OR4S2 Missense_Mutation p.R232L 0.19 tolerated(0.15) benign(0.017) TCGA-39-5011-01 11 55563213 55563213 T A OR5D14 Missense_Mutation p.M61K 0.19 deleterious(0) probably_damaging(0.91) TCGA-39-5011-01 11 55658869 55658869 G T TRIM51 Nonsense_Mutation p.E374* 0.19 TCGA-39-5011-01 11 55703813 55703813 G T OR5I1 Missense_Mutation p.R22S 0.16 tolerated(0.35) benign(0.004) TCGA-39-5011-01 11 56143148 56143148 C G OR8U1 Missense_Mutation p.L17V 0.08 tolerated(0.35) benign(0.213) TCGA-39-5011-01 11 56143170 56143170 A T OR8U1 Missense_Mutation p.K24M 0.09 deleterious(0) possibly_damaging(0.897) TCGA-39-5011-01 11 56230197 56230197 G A OR5M9 Silent p.R227R 0.24 TCGA-39-5011-01 11 5626793 5626793 T G TRIM6 Missense_Mutation p.L277R 0.19 deleterious(0) probably_damaging(0.995) TCGA-39-5011-01 11 56344514 56344514 G T OR5M10 Silent p.I228I 0.19 TCGA-39-5011-01 11 57995825 57995825 G A OR10Q1 Missense_Mutation p.H175Y 0.14 tolerated(0.15) benign(0.068) TCGA-39-5011-01 11 57995922 57995922 G A OR10Q1 Silent p.R142R 0.20 TCGA-39-5011-01 11 58978843 58978843 G T MPEG1 Missense_Mutation p.A499D 0.20 tolerated(0.05) benign(0.01) TCGA-39-5011-01 11 59282454 59282454 G T OR4D9 Silent p.L23L 0.17 TCGA-39-5011-01 11 59947400 59947400 C T MS4A6A Silent p.L90L 0.24 TCGA-39-5011-01 11 62396694 62396694 C A GANAB Missense_Mutation p.L658F 0.19 deleterious(0.02) benign(0.045) TCGA-39-5011-01 11 63078608 63078608 G C SLC22A10 3'UTR 0.33 TCGA-39-5011-01 11 6477359 6477359 C A TRIM3 Silent p.V492V 0.30 TCGA-39-5011-01 11 65780785 65780785 C A CST6 Intron 0.14 TCGA-39-5011-01 11 65988153 65988153 G T PACS1 Nonsense_Mutation p.E364* 0.18 TCGA-39-5011-01 11 68704112 68704112 A T IGHMBP2 Missense_Mutation p.S722C 0.25 deleterious(0.03) possibly_damaging(0.474) TCGA-39-5011-01 11 6912938 6912938 G T OR2D2 Missense_Mutation p.S265Y 0.30 deleterious(0.02) benign(0.114) TCGA-39-5011-01 11 71202912 71202912 A C NADSYN1 Missense_Mutation p.E576A 0.09 deleterious(0.02) possibly_damaging(0.864) TCGA-39-5011-01 11 71943955 71943955 C T INPPL1 Missense_Mutation p.P630S 0.12 tolerated(0.05) possibly_damaging(0.658) TCGA-39-5011-01 11 76372033 76372033 G T LRRC32 Missense_Mutation p.L202I 0.25 tolerated(0.06) probably_damaging(0.951) TCGA-39-5011-01 11 76893492 76893492 C A MYO7A Silent p.T1044T 0.19 TCGA-39-5011-01 11 76982377 76982377 C A GDPD4 Missense_Mutation p.W90L 0.24 deleterious(0) probably_damaging(0.995) TCGA-39-5011-01 11 85375020 85375020 G A CREBZF Silent p.P300P 0.26 TCGA-39-5011-01 11 89885630 89885630 C A NAALAD2 Silent p.L258L 0.12 TCGA-39-5011-01 11 92086238 92086238 G T FAT3 Missense_Mutation p.W320C 0.19 possibly_damaging(0.907) TCGA-39-5011-01 11 92534007 92534007 A T FAT3 Missense_Mutation p.R2610W 0.14 possibly_damaging(0.886) TCGA-39-5011-01 12 100729617 100729617 G A SCYL2 Missense_Mutation p.G653E 0.24 deleterious(0.02) benign(0.372) TCGA-39-5011-01 12 101365122 101365122 G T ANO4 Missense_Mutation p.L130F 0.24 deleterious(0.01) benign(0.126) TCGA-39-5011-01 12 102590450 102590450 G T PMCH Silent p.R160R 0.22 TCGA-39-5011-01 12 104102242 104102242 T C STAB2 Missense_Mutation p.C1406R 0.16 deleterious(0) probably_damaging(0.999) TCGA-39-5011-01 12 105550534 105550534 G T KIAA1033 Missense_Mutation p.R930I 0.16 deleterious(0) probably_damaging(0.979) TCGA-39-5011-01 12 109660420 109660420 C T ACACB Missense_Mutation p.R1225W 0.14 deleterious(0) probably_damaging(0.997) TCGA-39-5011-01 12 112140015 112140015 G T ACAD10 Missense_Mutation p.L79F 0.21 tolerated(0.19) benign(0.018) TCGA-39-5011-01 12 112479861 112479861 A G NAA25 Silent p.L808L 0.12 TCGA-39-5011-01 12 113306347 113306347 C T RPH3A Missense_Mutation p.A186V 0.23 tolerated(0.43) benign(0.002) TCGA-39-5011-01 12 113307817 113307817 G T RPH3A Missense_Mutation p.A257S 0.24 tolerated(0.98) benign(0.002) TCGA-39-5011-01 12 113319635 113319635 T G RPH3A Missense_Mutation p.L437R 0.13 deleterious(0) probably_damaging(0.999) TCGA-39-5011-01 12 117696884 117696884 C G NOS1 Missense_Mutation p.V807L 0.10 tolerated(0.73) benign(0.212) TCGA-39-5011-01 12 12044005 12044005 G T ETV6 3'UTR 0.27 TCGA-39-5011-01 12 130184592 130184592 G C TMEM132D Missense_Mutation p.A244G 0.22 tolerated(0.37) benign(0.029) TCGA-39-5011-01 12 132632446 132632446 A T NOC4L Missense_Mutation p.N209Y 0.29 deleterious(0) probably_damaging(0.986) TCGA-39-5011-01 12 21721839 21721839 T A GYS2 Silent p.I261I 0.23 TCGA-39-5011-01 12 21919255 21919255 C A KCNJ8 Missense_Mutation p.R226L 0.26 deleterious(0) probably_damaging(0.991) TCGA-39-5011-01 12 40020070 40020070 C G C12orf40 5'UTR 0.23 TCGA-39-5011-01 12 40020071 40020071 G A C12orf40 5'UTR 0.21 TCGA-39-5011-01 12 41585312 41585312 T C PDZRN4 Missense_Mutation p.L234S 0.21 deleterious_low_confidence(0) benign(0.216) TCGA-39-5011-01 12 44917239 44917239 G T NELL2 Missense_Mutation p.H661Q 0.21 deleterious(0) possibly_damaging(0.786) TCGA-39-5011-01 12 48090133 48090133 T G RPAP3 Silent p.T157T 0.24 TCGA-39-5011-01 12 49445467 49445467 C G KMT2D Missense_Mutation p.E667Q 0.17 unknown(0) TCGA-39-5011-01 12 49952363 49952363 C G MCRS1 3'Flank 0.20 TCGA-39-5011-01 12 50189202 50189202 C A NCKAP5L Missense_Mutation p.S814I 0.22 deleterious(0) probably_damaging(0.999) TCGA-39-5011-01 12 53070115 53070115 C A KRT1 Silent p.L473L 0.07 TCGA-39-5011-01 12 53721994 53721994 G A SP7 Missense_Mutation p.S411L 0.19 deleterious(0.04) benign(0.007) TCGA-39-5011-01 12 54686594 54686594 C A NFE2 Missense_Mutation p.R229L 0.28 deleterious(0) probably_damaging(0.962) TCGA-39-5011-01 12 56231685 56231685 G T MMP19 Silent p.P334P 0.21 TCGA-39-5011-01 12 57592294 57592294 A T LRP1 Missense_Mutation p.I3173F 0.19 probably_damaging(0.909) TCGA-39-5011-01 12 57966510 57966510 G T KIF5A Splice_Site p.X572_splice 0.20 TCGA-39-5011-01 12 5842044 5842044 C T ANO2 Splice_Site p.X475_splice 0.25 TCGA-39-5011-01 12 6103227 6103227 G T VWF Silent p.V2133V 0.28 TCGA-39-5011-01 12 63543842 63543842 C A AVPR1A Missense_Mutation p.A259S 0.20 tolerated(0.46) benign(0.014) TCGA-39-5011-01 12 85264299 85264299 G T SLC6A15 Missense_Mutation p.P485T 0.22 tolerated(0.2) probably_damaging(0.99) TCGA-39-5011-01 12 85446023 85446023 G T LRRIQ1 Missense_Mutation p.Q249H 0.12 deleterious(0) probably_damaging(0.962) TCGA-39-5011-01 12 9086466 9086466 A T PHC1 Missense_Mutation p.K633N 0.06 deleterious(0.01) unknown(0) TCGA-39-5011-01 12 91348387 91348387 C A CCER1 Missense_Mutation p.A45S 0.26 tolerated(0.1) possibly_damaging(0.866) TCGA-39-5011-01 12 9243907 9243907 G T A2M Silent p.R787R 0.22 TCGA-39-5011-01 12 93100769 93100769 C G C12orf74 Nonsense_Mutation p.S121* 0.04 TCGA-39-5011-01 12 93172980 93172980 C G EEA1 Missense_Mutation p.E1189Q 0.16 tolerated(0.05) probably_damaging(0.999) TCGA-39-5011-01 12 94543548 94543548 C T PLXNC1 Silent p.I267I 0.15 TCGA-39-5011-01 13 101278059 101278059 C A TMTC4 Silent p.L558L 0.09 TCGA-39-5011-01 13 101844318 101844318 C A NALCN Missense_Mutation p.A572S 0.25 tolerated(0.26) benign(0.241) TCGA-39-5011-01 13 101844320 101844320 C A NALCN Missense_Mutation p.W571L 0.25 tolerated(1) benign(0.001) TCGA-39-5011-01 13 108862798 108862798 C T LIG4 Silent p.K273K 0.22 TCGA-39-5011-01 13 115057170 115057170 G T UPF3A Missense_Mutation p.R250L 0.18 deleterious(0) possibly_damaging(0.815) TCGA-39-5011-01 13 22275344 22275344 G C FGF9 Missense_Mutation p.E133Q 0.40 deleterious(0) probably_damaging(0.981) TCGA-39-5011-01 13 27847666 27847666 G T RASL11A 3'UTR 0.19 TCGA-39-5011-01 13 45589591 45589591 G C GPALPP1 Missense_Mutation p.E189Q 0.23 deleterious(0) probably_damaging(0.915) TCGA-39-5011-01 13 46725170 46725170 C T LCP1 Silent p.L261L 0.29 TCGA-39-5011-01 13 53608556 53608556 C T OLFM4 Missense_Mutation p.T93I 0.26 tolerated(0.12) benign(0.427) TCGA-39-5011-01 13 58207875 58207875 G T PCDH17 Missense_Mutation p.G399C 0.45 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-39-5011-01 13 61986939 61986939 T C PCDH20 Missense_Mutation p.I431M 0.27 deleterious(0) probably_damaging(0.99) TCGA-39-5011-01 13 72255966 72255966 C A DACH1 Missense_Mutation p.V311F 0.22 probably_damaging(0.965) TCGA-39-5011-01 13 99948354 99948354 G T GPR183 Missense_Mutation p.P16T 0.24 tolerated(0.63) benign(0) TCGA-39-5011-01 14 100317221 100317221 G A EML1 Silent p.E33E 0.15 TCGA-39-5011-01 14 100996162 100996162 G A WDR25 Silent p.E473E 0.29 TCGA-39-5011-01 14 104195486 104195486 G C ZFYVE21 Missense_Mutation p.V165L 0.18 tolerated(0.24) benign(0.051) TCGA-39-5011-01 14 105419434 105419434 G C AHNAK2 Missense_Mutation p.A785G 0.17 benign(0.052) TCGA-39-5011-01 14 106622324 106622324 C - IGHV3-16 Frame_Shift_Del p.V8Ffs*7 0.12 TCGA-39-5011-01 14 106805304 106805304 G C IGHV4-31 Missense_Mutation p.R87G 0.10 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-39-5011-01 14 20444571 20444571 C A OR4K15 Missense_Mutation p.F298L 0.22 deleterious(0.05) benign(0.181) TCGA-39-5011-01 14 20845800 20845800 C A TEP1 Missense_Mutation p.G1945V 0.23 deleterious(0) possibly_damaging(0.873) TCGA-39-5011-01 14 20845801 20845801 C G TEP1 Missense_Mutation p.G1945R 0.22 deleterious(0) probably_damaging(0.947) TCGA-39-5011-01 14 21526157 21526157 C G RNASE8 Missense_Mutation p.Q36E 0.11 deleterious(0.02) possibly_damaging(0.851) TCGA-39-5011-01 14 22314895 22314895 G T TRAV8-2 5'UTR 0.17 TCGA-39-5011-01 14 22392601 22392601 G T TRAV14DV4 Missense_Mutation p.D42Y 0.25 TCGA-39-5011-01 14 22521161 22521161 A T TRAV21 Missense_Mutation p.K61I 0.10 deleterious(0) probably_damaging(0.91) TCGA-39-5011-01 14 22592045 22592045 A T TRAV26-1 Missense_Mutation p.I44F 0.17 deleterious(0.02) benign(0.067) TCGA-39-5011-01 14 23865535 23865535 C G MYH6 Missense_Mutation p.G796A 0.18 deleterious(0.01) benign(0.038) TCGA-39-5011-01 14 24619946 24619946 G T RNF31 Missense_Mutation p.R446L 0.10 tolerated(0.25) benign(0.002) TCGA-39-5011-01 14 26917386 26917386 C A NOVA1 Missense_Mutation p.A435S 0.14 tolerated(0.07) probably_damaging(0.975) TCGA-39-5011-01 14 30107904 30107904 G A PRKD1 Silent p.C301C 0.16 TCGA-39-5011-01 14 34269440 34269440 G T NPAS3 Missense_Mutation p.A643S 0.22 tolerated_low_confidence(0.66) benign(0.112) TCGA-39-5011-01 14 34420015 34420015 C A EGLN3 5'UTR 0.20 TCGA-39-5011-01 14 42356109 42356109 C A LRFN5 Missense_Mutation p.A94D 0.18 deleterious(0) probably_damaging(0.995) TCGA-39-5011-01 14 52495486 52495486 C G NID2 Missense_Mutation p.E828D 0.18 tolerated(0.06) benign(0.018) TCGA-39-5011-01 14 55890921 55890921 C T TBPL2 Missense_Mutation p.R336Q 0.30 tolerated(0.06) benign(0.209) TCGA-39-5011-01 14 58895117 58895117 G T KIAA0586 Silent p.P57P 0.11 TCGA-39-5011-01 14 59108428 59108428 G A DACT1 Silent p.A199A 0.09 TCGA-39-5011-01 14 64681068 64681068 G C SYNE2 Missense_Mutation p.G6405R 0.10 probably_damaging(1) TCGA-39-5011-01 14 65260399 65260399 G C SPTB Missense_Mutation p.S661C 0.13 deleterious(0.03) probably_damaging(0.99) TCGA-39-5011-01 14 70713468 70713468 T A ADAM21P1 RNA 0.11 TCGA-39-5011-01 14 72085509 72085509 G T SIPA1L1 Missense_Mutation p.G512C 0.25 deleterious(0) probably_damaging(0.991) TCGA-39-5011-01 14 72196850 72196850 G A SIPA1L1 Missense_Mutation p.D1586N 0.15 deleterious(0) probably_damaging(0.995) TCGA-39-5011-01 14 74086555 74086555 C A ACOT6 3'UTR 0.19 TCGA-39-5011-01 14 74376123 74376123 G A ZNF410 Silent p.V348V 0.16 TCGA-39-5011-01 14 74876401 74876401 G A SYNDIG1L Missense_Mutation p.P16L 0.16 deleterious(0.01) benign(0.327) TCGA-39-5011-01 14 75265782 75265782 G A YLPM1 Missense_Mutation p.R1261Q 0.25 probably_damaging(0.975) TCGA-39-5011-01 14 76905809 76905809 C A ESRRB Nonsense_Mutation p.S38* 0.24 TCGA-39-5011-01 14 81743340 81743340 T A STON2 Missense_Mutation p.E772V 0.21 deleterious(0) probably_damaging(0.999) TCGA-39-5011-01 14 81743341 81743341 C A STON2 Nonsense_Mutation p.E772* 0.21 TCGA-39-5011-01 14 88652134 88652134 G T KCNK10 Silent p.T459T 0.13 TCGA-39-5011-01 14 90429985 90429985 C A TDP1 Missense_Mutation p.P176Q 0.24 tolerated(0.67) benign(0.009) TCGA-39-5011-01 14 92136183 92136183 T G CATSPERB Missense_Mutation p.H421P 0.23 deleterious(0) possibly_damaging(0.836) TCGA-39-5011-01 14 94088936 94088936 T C UNC79 Missense_Mutation p.V1609A 0.04 deleterious_low_confidence(0.03) benign(0.008) TCGA-39-5011-01 14 94156558 94156558 C T UNC79 Missense_Mutation p.S2256F 0.14 deleterious(0.04) possibly_damaging(0.603) TCGA-39-5011-01 14 95054211 95054211 A T SERPINA5 Missense_Mutation p.Q171L 0.19 tolerated(0.21) benign(0.416) TCGA-39-5011-01 14 95057178 95057178 C G SERPINA5 Missense_Mutation p.T328S 0.26 tolerated(0.11) benign(0.082) TCGA-39-5011-01 14 95557649 95557649 C A DICER1 Missense_Mutation p.K1806N 0.14 deleterious(0) probably_damaging(0.999) TCGA-39-5011-01 15 22369250 22369250 C G OR4M2 Missense_Mutation p.F225L 0.13 tolerated(1) benign(0) TCGA-39-5011-01 15 25225147 25225147 G A SNRPN 3'Flank 0.20 TCGA-39-5011-01 15 25324133 25324133 C A SNORD116-12 3'Flank 0.17 TCGA-39-5011-01 15 25330375 25330375 G A SNORD116-18 5'Flank 0.31 TCGA-39-5011-01 15 27572017 27572017 G A GABRG3 Missense_Mutation p.S111N 0.27 tolerated(0.28) possibly_damaging(0.649) TCGA-39-5011-01 15 31362040 31362040 A C TRPM1 Intron 0.38 TCGA-39-5011-01 15 34077906 34077906 C A RYR3 Silent p.I3104I 0.27 TCGA-39-5011-01 15 42374528 42374528 C A PLA2G4D Silent p.L244L 0.25 TCGA-39-5011-01 15 49319674 49319674 C A SECISBP2L Missense_Mutation p.G308V 0.21 deleterious(0) benign(0.06) TCGA-39-5011-01 15 63638799 63638799 C A CA12 Silent p.T72T 0.17 TCGA-39-5011-01 15 68661611 68661611 C - ITGA11 Frame_Shift_Del p.G59Afs*20 0.29 TCGA-39-5011-01 15 74740931 74740931 G C UBL7 Nonsense_Mutation p.S298* 0.17 TCGA-39-5011-01 15 75975261 75975261 C A CSPG4 Missense_Mutation p.R1524L 0.29 deleterious(0.02) benign(0.015) TCGA-39-5011-01 15 81591844 81591844 G A IL16 Missense_Mutation p.S726N 0.24 tolerated(0.62) benign(0.085) TCGA-39-5011-01 15 88472631 88472631 C A NTRK3 Nonsense_Mutation p.G642* 0.30 TCGA-39-5011-01 15 89169578 89169578 G T AEN Missense_Mutation p.L46F 0.12 deleterious(0.04) probably_damaging(0.997) TCGA-39-5011-01 15 91419788 91419788 G T FURIN Splice_Site p.X124_splice 0.17 TCGA-39-5011-01 16 20355348 20355348 G T UMOD Silent p.V443V 0.28 TCGA-39-5011-01 16 20362010 20362010 C A UMOD Missense_Mutation p.W17L 0.08 tolerated_low_confidence(0.13) possibly_damaging(0.84) TCGA-39-5011-01 16 20380836 20380836 C G PDILT Missense_Mutation p.S365T 0.18 deleterious(0.01) possibly_damaging(0.543) TCGA-39-5011-01 16 20999376 20999376 G T DNAH3 Missense_Mutation p.R2205S 0.31 deleterious(0) probably_damaging(0.999) TCGA-39-5011-01 16 27802626 27802626 T A GSG1L 3'UTR 0.24 TCGA-39-5011-01 16 28503086 28503086 C A CLN3 5'UTR 0.11 TCGA-39-5011-01 16 311507 311507 G A ITFG3 Silent p.R234R 0.31 TCGA-39-5011-01 16 3117436 3117436 C T IL32 Intron 0.32 TCGA-39-5011-01 16 33647425 33647425 C A RP11-812E19.9 Missense_Mutation p.A59S 0.11 deleterious_low_confidence(0.02) probably_damaging(0.974) TCGA-39-5011-01 16 48242371 48242371 C A ABCC11 Missense_Mutation p.G549C 0.25 deleterious(0) probably_damaging(1) TCGA-39-5011-01 16 49669758 49669758 C A ZNF423 Missense_Mutation p.G1102V 0.26 deleterious(0.04) benign(0.15) TCGA-39-5011-01 16 56548425 56548425 C A BBS2 Silent p.G95G 0.27 TCGA-39-5011-01 16 56602866 56602866 C A MT4 3'UTR 0.18 TCGA-39-5011-01 16 56920879 56920879 G C SLC12A3 Missense_Mutation p.Q684H 0.15 tolerated(0.13) benign(0.082) TCGA-39-5011-01 16 58288028 58288028 A T CCDC113 Missense_Mutation p.R119W 0.24 deleterious(0) probably_damaging(0.986) TCGA-39-5011-01 16 71008189 71008189 G T HYDIN Missense_Mutation p.L1642I 0.25 probably_damaging(0.953) TCGA-39-5011-01 16 77353959 77353959 G T ADAMTS18 Silent p.G773G 0.17 TCGA-39-5011-01 16 86613256 86613256 C A FOXL1 Missense_Mutation p.N309K 0.21 deleterious(0.02) probably_damaging(0.962) TCGA-39-5011-01 17 10209862 10209862 C A MYH13 Missense_Mutation p.V1794L 0.41 tolerated(0.06) benign(0.207) TCGA-39-5011-01 17 11774956 11774956 C A DNAH9 Silent p.A3365A 0.43 TCGA-39-5011-01 17 12661519 12661519 G A MYOCD Missense_Mutation p.A774T 0.04 deleterious(0) possibly_damaging(0.628) TCGA-39-5011-01 17 1787161 1787161 G T RPA1 Missense_Mutation p.G433C 0.33 deleterious(0) possibly_damaging(0.896) TCGA-39-5011-01 17 17924527 17924527 G C ATPAF2 Silent p.L214L 0.18 TCGA-39-5011-01 17 18010673 18010673 C G DRG2 3'UTR 0.33 TCGA-39-5011-01 17 21731375 21731375 A T UBBP4 Intron 0.21 TCGA-39-5011-01 17 26105953 26105953 G C NOS2 Missense_Mutation p.I378M 0.09 deleterious(0) probably_damaging(0.967) TCGA-39-5011-01 17 29151681 29151681 G A CRLF3 5'UTR 0.18 TCGA-39-5011-01 17 3119199 3119199 G T OR1A1 Silent p.G95G 0.33 TCGA-39-5011-01 17 32597356 32597356 C T CCL7 Missense_Mutation p.A16V 0.25 tolerated(0.11) benign(0.014) TCGA-39-5011-01 17 34251644 34251644 C A RDM1 Missense_Mutation p.G178C 0.20 deleterious(0) probably_damaging(0.995) TCGA-39-5011-01 17 34398329 34398329 C A CCL18 Silent p.G66G 0.22 TCGA-39-5011-01 17 3592815 3592815 C A P2RX5 Missense_Mutation p.G242W 0.35 deleterious(0) probably_damaging(1) TCGA-39-5011-01 17 39394741 39394741 G T KRTAP9-8 Missense_Mutation p.Q146H 0.24 tolerated(0.25) probably_damaging(0.961) TCGA-39-5011-01 17 39550359 39550359 G C KRT31 Missense_Mutation p.S387C 0.08 tolerated(0.21) possibly_damaging(0.572) TCGA-39-5011-01 17 39593757 39593757 G A KRT38 Silent p.C426C 0.20 TCGA-39-5011-01 17 39636939 39636939 G T KRT35 Silent p.V137V 0.07 TCGA-39-5011-01 17 39887974 39887974 C A HAP1 Silent p.L306L 0.07 TCGA-39-5011-01 17 44788413 44788413 G C NSF Missense_Mutation p.D519H 0.26 tolerated(0.11) benign(0.185) TCGA-39-5011-01 17 46627909 46627909 C A HOXB3 Silent p.P361P 0.38 TCGA-39-5011-01 17 4692299 4692299 C A GLTPD2 5'UTR 0.26 TCGA-39-5011-01 17 54230891 54230891 G T ANKFN1 Missense_Mutation p.R7S 0.16 deleterious_low_confidence(0.05) benign(0.002) TCGA-39-5011-01 17 5463233 5463233 C A NLRP1 Missense_Mutation p.E261D 0.37 deleterious(0.01) possibly_damaging(0.585) TCGA-39-5011-01 17 56572293 56572293 A - MTMR4 Frame_Shift_Del p.F1070Lfs*4 0.12 TCGA-39-5011-01 17 57076601 57076601 C A TRIM37 3'UTR 0.27 TCGA-39-5011-01 17 60678154 60678154 C T TLK2 Missense_Mutation p.P565S 0.08 deleterious(0.01) possibly_damaging(0.74) TCGA-39-5011-01 17 61489002 61489002 C T TANC2 Silent p.G1166G 0.13 TCGA-39-5011-01 17 62142618 62142618 G C ERN1 Missense_Mutation p.T291S 0.08 tolerated(0.4) benign(0.021) TCGA-39-5011-01 17 65104807 65104807 T A HELZ Missense_Mutation p.R1509W 0.09 deleterious_low_confidence(0) unknown(0) TCGA-39-5011-01 17 67133449 67133449 G T ABCA6 Missense_Mutation p.P97T 0.07 tolerated(0.12) possibly_damaging(0.745) TCGA-39-5011-01 17 67189301 67189301 C A ABCA10 Missense_Mutation p.R577L 0.09 deleterious(0) probably_damaging(0.954) TCGA-39-5011-01 17 68171750 68171750 C A KCNJ2 Missense_Mutation p.N190K 0.13 deleterious(0.01) probably_damaging(1) TCGA-39-5011-01 17 71196861 71196861 G C COG1 Missense_Mutation p.K409N 0.28 deleterious(0.01) benign(0.174) TCGA-39-5011-01 17 72338098 72338098 C T KIF19 Silent p.D68D 0.09 TCGA-39-5011-01 17 72469908 72469908 A T CD300A Missense_Mutation p.N92Y 0.29 deleterious(0.01) probably_damaging(0.974) TCGA-39-5011-01 17 73888458 73888458 G A TRIM65 Nonsense_Mutation p.Q212* 0.21 TCGA-39-5011-01 17 7578268 7578268 A T TP53 Missense_Mutation p.L194H 0.37 deleterious(0) probably_damaging(1) TCGA-39-5011-01 17 8092990 8092990 G T C17orf59 Missense_Mutation p.R157S 0.24 deleterious_low_confidence(0) possibly_damaging(0.645) TCGA-39-5011-01 18 20586363 20586363 G C RBBP8 Silent p.A775A 0.12 TCGA-39-5011-01 18 2747542 2747542 G T SMCHD1 Missense_Mutation p.R1275I 0.19 tolerated(0.18) benign(0.177) TCGA-39-5011-01 18 28923719 28923719 G T DSG1 Intron 0.50 TCGA-39-5011-01 18 31320338 31320338 C A ASXL3 Missense_Mutation p.N990K 0.07 benign(0.05) TCGA-39-5011-01 18 31323199 31323199 G T ASXL3 Missense_Mutation p.L1129F 0.26 possibly_damaging(0.653) TCGA-39-5011-01 18 32455277 32455277 A T DTNA Silent p.S519S 0.29 TCGA-39-5011-01 18 34853085 34853085 C T CELF4 Silent p.Q281Q 0.21 TCGA-39-5011-01 18 42643284 42643284 A T SETBP1 Missense_Mutation p.Q1471L 0.36 tolerated(0.08) probably_damaging(0.979) TCGA-39-5011-01 18 43212385 43212385 G T SLC14A2 Nonsense_Mutation p.E198* 0.21 TCGA-39-5011-01 18 54694263 54694263 G C WDR7 Missense_Mutation p.G1433A 0.13 deleterious(0.01) probably_damaging(0.912) TCGA-39-5011-01 18 56964003 56964003 G T CPLX4 Missense_Mutation p.T137N 0.20 tolerated(0.12) benign(0.211) TCGA-39-5011-01 18 64211232 64211232 G T CDH19 Missense_Mutation p.P397Q 0.28 deleterious(0.01) probably_damaging(0.951) TCGA-39-5011-01 18 67863860 67863860 C A RTTN Missense_Mutation p.A240S 0.17 tolerated(0.15) probably_damaging(0.992) TCGA-39-5011-01 18 67992985 67992985 G T SOCS6 Missense_Mutation p.V361L 0.24 deleterious(0.02) benign(0.104) TCGA-39-5011-01 18 70461405 70461405 C A NETO1 Missense_Mutation p.A196S 0.25 tolerated(0.42) benign(0.014) TCGA-39-5011-01 18 70502530 70502530 C G NETO1 Intron 0.31 TCGA-39-5011-01 19 10602581 10602581 C A KEAP1 Missense_Mutation p.G333C 0.26 deleterious(0) probably_damaging(1) TCGA-39-5011-01 19 10688000 10688000 G A AP1M2 Silent p.A307A 0.17 TCGA-39-5011-01 19 11651950 11651950 G T CNN1 Silent p.V41V 0.26 TCGA-39-5011-01 19 12576177 12576177 C G ZNF709 Missense_Mutation p.E187Q 0.24 tolerated(0.15) possibly_damaging(0.666) TCGA-39-5011-01 19 13226960 13226960 G A TRMT1 Missense_Mutation p.T85I 0.27 deleterious(0) probably_damaging(0.997) TCGA-39-5011-01 19 14952174 14952174 C G OR7A10 Missense_Mutation p.M172I 0.37 deleterious_low_confidence(0.05) benign(0.02) TCGA-39-5011-01 19 15739176 15739176 C T CYP4F8 RNA 0.29 TCGA-39-5011-01 19 15839541 15839541 C A OR10H2 Missense_Mutation p.P230T 0.26 deleterious(0.02) probably_damaging(0.911) TCGA-39-5011-01 19 19627114 19627114 C T NDUFA13 Missense_Mutation p.R23W 0.10 tolerated(0.06) possibly_damaging(0.458) TCGA-39-5011-01 19 19672921 19672921 C A PBX4 Missense_Mutation p.Q346H 0.31 tolerated_low_confidence(0.11) benign(0) TCGA-39-5011-01 19 22235400 22235400 C A ZNF257 5'UTR 0.20 TCGA-39-5011-01 19 22940077 22940077 C A ZNF99 3'Flank 0.22 TCGA-39-5011-01 19 31039211 31039211 C T ZNF536 Silent p.T895T 0.18 TCGA-39-5011-01 19 33623109 33623109 C T WDR88 Missense_Mutation p.H12Y 0.14 tolerated_low_confidence(0.06) benign(0) TCGA-39-5011-01 19 34959945 34959945 C G UBA2 Missense_Mutation p.A581G 0.07 tolerated(0.38) benign(0.004) TCGA-39-5011-01 19 34960111 34960111 C A UBA2 Silent p.V636V 0.17 TCGA-39-5011-01 19 35551249 35551249 A T HPN Splice_Site p.X152_splice 0.14 TCGA-39-5011-01 19 36051399 36051399 G T ATP4A Missense_Mutation p.A218E 0.25 tolerated(0.46) benign(0.002) TCGA-39-5011-01 19 36054338 36054339 - A ATP4A Frame_Shift_Ins p.G35Vfs*19 0.21 TCGA-39-5011-01 19 36120534 36120534 C G RBM42 Missense_Mutation p.P81A 0.09 deleterious(0) probably_damaging(0.997) TCGA-39-5011-01 19 36271129 36271129 G T ARHGAP33 Missense_Mutation p.R173L 0.15 tolerated_low_confidence(0.06) benign(0.433) TCGA-39-5011-01 19 38876083 38876083 G C GGN Missense_Mutation p.L607V 0.18 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-39-5011-01 19 40419686 40419686 C A FCGBP Missense_Mutation p.G1103V 0.21 probably_damaging(0.995) TCGA-39-5011-01 19 40419687 40419687 C A FCGBP Missense_Mutation p.G1103W 0.21 probably_damaging(0.998) TCGA-39-5011-01 19 42729170 42729170 C G ZNF526 Silent p.L205L 0.25 TCGA-39-5011-01 19 4280174 4280174 G C SHD Missense_Mutation p.K38N 0.23 deleterious(0) probably_damaging(0.999) TCGA-39-5011-01 19 48305136 48305136 C A TPRX1 Missense_Mutation p.G378W 0.27 deleterious_low_confidence(0.02) probably_damaging(0.938) TCGA-39-5011-01 19 48519170 48519170 C T ELSPBP1 Missense_Mutation p.P77S 0.30 deleterious(0) probably_damaging(1) TCGA-39-5011-01 19 51325066 51325066 C A KLK1 Missense_Mutation p.Q36H 0.22 tolerated(0.07) possibly_damaging(0.5) TCGA-39-5011-01 19 51410300 51410300 C A KLK4 Missense_Mutation p.G219C 0.33 deleterious(0) probably_damaging(1) TCGA-39-5011-01 19 51509895 51509895 G T KLK9 Silent p.P95P 0.28 TCGA-39-5011-01 19 51532549 51532549 G T KLK12 Intron 0.36 TCGA-39-5011-01 19 51629113 51629113 C A SIGLEC9 Silent p.T227T 0.25 TCGA-39-5011-01 19 51856493 51856493 C G ETFB Missense_Mutation p.E181Q 0.26 tolerated_low_confidence(0.12) benign(0.112) TCGA-39-5011-01 19 52505448 52505448 C A ZNF615 Silent p.R34R 0.31 TCGA-39-5011-01 19 54377642 54377642 G C MYADM Missense_Mutation p.V287L 0.24 tolerated(0.28) benign(0.291) TCGA-39-5011-01 19 5456697 5456697 G T ZNRF4 Missense_Mutation p.G399C 0.26 deleterious(0.01) benign(0.415) TCGA-39-5011-01 19 54742919 54742919 G C LILRA6 Silent p.G452G 0.11 TCGA-39-5011-01 19 54848932 54848932 C A LILRA4 Missense_Mutation p.G231C 0.33 deleterious(0) probably_damaging(0.934) TCGA-39-5011-01 19 7754118 7754118 G T FCER2 Missense_Mutation p.D309E 0.21 tolerated_low_confidence(0.4) benign(0.048) TCGA-39-5011-01 1 109811812 109811812 C T CELSR2 Missense_Mutation p.P2238S 0.23 deleterious(0.05) probably_damaging(0.916) TCGA-39-5011-01 1 110884845 110884845 C T RBM15 Silent p.L940L 0.21 TCGA-39-5011-01 1 114454175 114454175 G T DCLRE1B Missense_Mutation p.D321Y 0.13 deleterious(0.01) benign(0.112) TCGA-39-5011-01 1 11769366 11769366 G A DRAXIN Missense_Mutation p.M162I 0.10 tolerated(0.3) benign(0.015) TCGA-39-5011-01 1 119427720 119427720 G A TBX15 Nonsense_Mutation p.Q376* 0.19 TCGA-39-5011-01 1 120465316 120465316 G T NOTCH2 Missense_Mutation p.L1649I 0.13 deleterious(0.02) possibly_damaging(0.519) TCGA-39-5011-01 1 12855612 12855615 TTGG ATTTTT PRAMEF1 Frame_Shift_Ins p.L298Ifs*4 0.09 TCGA-39-5011-01 1 12856053 12856053 A T PRAMEF1 Missense_Mutation p.R445W 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-39-5011-01 1 12919912 12919912 C A PRAMEF2 Missense_Mutation p.P218T 0.21 tolerated(0.13) possibly_damaging(0.638) TCGA-39-5011-01 1 13036648 13036648 C T PRAMEF22 Silent p.F240F 0.13 TCGA-39-5011-01 1 152128648 152128648 C A RPTN Missense_Mutation p.Q309H 0.21 deleterious(0.03) possibly_damaging(0.609) TCGA-39-5011-01 1 152279571 152279571 C T FLG Silent p.E2597E 0.18 TCGA-39-5011-01 1 152281526 152281526 C G FLG Missense_Mutation p.A1946P 0.03 possibly_damaging(0.665) TCGA-39-5011-01 1 152326512 152326512 G T FLG2 Missense_Mutation p.S1250R 0.07 unknown(0) TCGA-39-5011-01 1 155783505 155783505 T C GON4L Missense_Mutation p.R458G 0.14 deleterious(0.04) benign(0.005) TCGA-39-5011-01 1 156843508 156843508 T G NTRK1 Missense_Mutation p.S312A 0.18 tolerated(0.29) benign(0.007) TCGA-39-5011-01 1 157559153 157559153 A T FCRL4 Missense_Mutation p.Y50N 0.16 tolerated(0.25) benign(0.005) TCGA-39-5011-01 1 157667662 157667662 C A FCRL3 Missense_Mutation p.V116F 0.05 deleterious(0) probably_damaging(0.965) TCGA-39-5011-01 1 157737339 157737339 G T FCRL2 Intron 0.24 TCGA-39-5011-01 1 157803204 157803204 A T CD5L Missense_Mutation p.W273R 0.06 deleterious(0) probably_damaging(1) TCGA-39-5011-01 1 158435886 158435886 T A OR10K1 Missense_Mutation p.C179S 0.25 deleterious(0) probably_damaging(0.999) TCGA-39-5011-01 1 158581074 158581074 T G SPTA1 Missense_Mutation p.N2414H 0.23 tolerated(0.26) probably_damaging(0.933) TCGA-39-5011-01 1 160106415 160106415 C T ATP1A2 Silent p.N873N 0.09 TCGA-39-5011-01 1 160128882 160128882 C T ATP1A4 Nonsense_Mutation p.R206* 0.23 TCGA-39-5011-01 1 160461156 160461156 A T SLAMF6 Silent p.V135V 0.14 TCGA-39-5011-01 1 161693303 161693303 C A FCRLB Missense_Mutation p.L67I 0.20 deleterious(0.04) possibly_damaging(0.872) TCGA-39-5011-01 1 163295851 163295851 T G NUF2 Missense_Mutation p.L4V 0.28 deleterious(0.01) probably_damaging(0.969) TCGA-39-5011-01 1 166135281 166135281 C A FAM78B Missense_Mutation p.G69C 0.30 deleterious(0) probably_damaging(1) TCGA-39-5011-01 1 167023704 167023704 C A GPA33 Splice_Site p.X276_splice 0.08 TCGA-39-5011-01 1 167097802 167097802 A T DUSP27 Missense_Mutation p.Q1145L 0.07 tolerated(0.25) benign(0.039) TCGA-39-5011-01 1 169138705 169138705 G A NME7 Missense_Mutation p.P360S 0.07 deleterious(0) possibly_damaging(0.824) TCGA-39-5011-01 1 169497313 169497313 G T F5 Nonsense_Mutation p.Y1813* 0.20 TCGA-39-5011-01 1 169762776 169762776 T C METTL18 Missense_Mutation p.R21G 0.18 tolerated(1) benign(0) TCGA-39-5011-01 1 169923177 169923177 C A KIFAP3 Missense_Mutation p.V750F 0.06 tolerated(0.74) benign(0.019) TCGA-39-5011-01 1 174846669 174846669 G A RABGAP1L Intron 0.09 TCGA-39-5011-01 1 17606863 17606863 C A PADI3 Missense_Mutation p.T525N 0.07 tolerated(0.36) benign(0.351) TCGA-39-5011-01 1 176833540 176833540 G T ASTN1 Nonsense_Mutation p.Y1255* 0.12 TCGA-39-5011-01 1 17698843 17698843 T A PADI6 RNA 0.15 TCGA-39-5011-01 1 178490351 178490351 C A TEX35 Intron 0.23 TCGA-39-5011-01 1 180885680 180885680 G T KIAA1614 Silent p.L147L 0.19 TCGA-39-5011-01 1 181680135 181680135 C A CACNA1E Missense_Mutation p.F367L 0.06 deleterious(0) benign(0.153) TCGA-39-5011-01 1 19167022 19167022 C A TAS1R2 Splice_Site p.X531_splice 0.14 TCGA-39-5011-01 1 192335239 192335239 G T RGS21 Missense_Mutation p.W148C 0.17 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-39-5011-01 1 20107098 20107098 G A TMCO4 Nonsense_Mutation p.Q52* 0.22 TCGA-39-5011-01 1 202976988 202976988 G A TMEM183A Missense_Mutation p.E66K 0.20 deleterious(0.04) possibly_damaging(0.506) TCGA-39-5011-01 1 202987675 202987675 A T TMEM183A Nonsense_Mutation p.K259* 0.22 TCGA-39-5011-01 1 203472055 203472055 T A OPTC Missense_Mutation p.L249Q 0.23 deleterious(0) probably_damaging(0.998) TCGA-39-5011-01 1 211093229 211093229 G T KCNH1 Silent p.I405I 0.08 TCGA-39-5011-01 1 21205816 21205816 C A EIF4G3 Silent p.T824T 0.14 TCGA-39-5011-01 1 214816061 214816061 G T CENPF Missense_Mutation p.L1460F 0.10 possibly_damaging(0.788) TCGA-39-5011-01 1 21599398 21599398 G A ECE1 Missense_Mutation p.P96L 0.14 deleterious(0.02) possibly_damaging(0.632) TCGA-39-5011-01 1 229683293 229683293 C T ABCB10 Missense_Mutation p.D292N 0.21 deleterious(0) probably_damaging(0.998) TCGA-39-5011-01 1 23640138 23640138 T G HNRNPR Missense_Mutation p.K362Q 0.17 tolerated(0.09) benign(0.219) TCGA-39-5011-01 1 236902811 236902811 C A ACTN2 Silent p.P362P 0.17 TCGA-39-5011-01 1 237494219 237494219 G T RYR2 Missense_Mutation p.E70D 0.05 possibly_damaging(0.754) TCGA-39-5011-01 1 240286621 240286621 C A FMN2 Silent p.A586A 0.07 TCGA-39-5011-01 1 240370356 240370356 C T FMN2 Silent p.P748P 0.16 TCGA-39-5011-01 1 24077997 24077999 AGA - TCEB3 In_Frame_Del p.K328del 0.16 TCGA-39-5011-01 1 241951191 241951191 G - WDR64 Frame_Shift_Del p.G906Dfs*25 0.09 TCGA-39-5011-01 1 246929373 246929373 G T SCCPDH Silent p.V372V 0.10 TCGA-39-5011-01 1 247752055 247752055 C A OR2G2 Missense_Mutation p.P132T 0.22 deleterious(0) probably_damaging(1) TCGA-39-5011-01 1 248059204 248059204 G T OR2W3 Missense_Mutation p.G106C 0.19 tolerated(0.06) benign(0.079) TCGA-39-5011-01 1 248224439 248224439 G T OR2L3 Silent p.S152S 0.07 TCGA-39-5011-01 1 2938437 2938437 C A ACTRT2 Missense_Mutation p.L63M 0.12 tolerated(0.09) possibly_damaging(0.89) TCGA-39-5011-01 1 32092476 32092476 C A HCRTR1 Silent p.P391P 0.20 TCGA-39-5011-01 1 32167788 32167788 C A COL16A1 Missense_Mutation p.V3L 0.24 unknown(0) TCGA-39-5011-01 1 32741637 32741637 C A LCK Missense_Mutation p.L202M 0.16 deleterious(0) probably_damaging(1) TCGA-39-5011-01 1 34080173 34080173 G T CSMD2 Missense_Mutation p.P1982T 0.20 deleterious(0) probably_damaging(1) TCGA-39-5011-01 1 46499540 46499540 C T MAST2 Missense_Mutation p.R1202W 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-39-5011-01 1 47351189 47351189 A T CYP4Z2P RNA 0.14 TCGA-39-5011-01 1 47770599 47770599 T A STIL Silent p.P38P 0.20 TCGA-39-5011-01 1 53236748 53236748 C A ZYG11B Silent p.R85R 0.11 TCGA-39-5011-01 1 67147613 67147613 C A SGIP1 Missense_Mutation p.D292E 0.17 tolerated_low_confidence(0.05) probably_damaging(0.956) TCGA-39-5011-01 1 67148001 67148001 G C SGIP1 Missense_Mutation p.V422L 0.04 tolerated(0.11) possibly_damaging(0.846) TCGA-39-5011-01 1 67306184 67306184 C A WDR78 Missense_Mutation p.V488L 0.11 deleterious(0) probably_damaging(0.977) TCGA-39-5011-01 1 70503898 70503898 C A LRRC7 Silent p.P759P 0.16 TCGA-39-5011-01 1 75740644 75740644 C A SLC44A5 Nonsense_Mutation p.E87* 0.15 TCGA-39-5011-01 1 77510043 77510043 C A ST6GALNAC5 Missense_Mutation p.T139N 0.11 probably_damaging(0.995) TCGA-39-5011-01 1 86611856 86611856 G T COL24A1 Missense_Mutation p.L23I 0.16 tolerated(0.3) benign(0.417) TCGA-39-5011-01 1 87041235 87041235 C A CLCA4 Nonsense_Mutation p.S635* 0.15 TCGA-39-5011-01 20 209980 209980 G T DEFB129 Silent p.V40V 0.27 TCGA-39-5011-01 20 2298020 2298020 C - TGM3 Frame_Shift_Del p.R292Gfs*2 0.30 TCGA-39-5011-01 20 2315913 2315913 C A TGM3 Silent p.T598T 0.35 TCGA-39-5011-01 20 30738429 30738429 A T TM9SF4 Silent p.V364V 0.24 TCGA-39-5011-01 20 31590725 31590725 C A SUN5 Missense_Mutation p.R26S 0.23 tolerated_low_confidence(0.07) benign(0.011) TCGA-39-5011-01 20 33329691 33329691 G A NCOA6 Nonsense_Mutation p.Q1457* 0.15 TCGA-39-5011-01 20 36841393 36841393 G T KIAA1755 3'UTR 0.33 TCGA-39-5011-01 20 39990721 39990721 G T EMILIN3 Silent p.G496G 0.30 TCGA-39-5011-01 20 43850965 43850965 C A SEMG2 Nonsense_Mutation p.S231* 0.21 TCGA-39-5011-01 20 49626720 49626720 G T KCNG1 Silent p.P52P 0.24 TCGA-39-5011-01 20 55026987 55026987 A T CASS4 Missense_Mutation p.K252M 0.35 deleterious(0.01) probably_damaging(0.987) TCGA-39-5011-01 20 56098893 56098893 C A CTCFL Missense_Mutation p.E123D 0.21 tolerated(0.5) benign(0.004) TCGA-39-5011-01 20 57428488 57428488 C G GNAS Missense_Mutation p.N56K 0.15 deleterious_low_confidence(0.02) unknown(0) TCGA-39-5011-01 20 57767795 57767795 C A ZNF831 Missense_Mutation p.P574H 0.13 tolerated(0.17) possibly_damaging(0.747) TCGA-39-5011-01 20 58519074 58519074 G C FAM217B Missense_Mutation p.V26L 0.25 tolerated(0.15) benign(0.014) TCGA-39-5011-01 20 60892518 60892518 C A LAMA5 Missense_Mutation p.R2465L 0.13 possibly_damaging(0.647) TCGA-39-5011-01 20 61445084 61445084 C T OGFR 3'UTR 0.07 TCGA-39-5011-01 20 61512481 61512481 C T DIDO1 Silent p.P1609P 0.16 TCGA-39-5011-01 20 61528337 61528337 C A DIDO1 Missense_Mutation p.D534Y 0.15 probably_damaging(0.935) TCGA-39-5011-01 20 62191307 62191307 C A HELZ2 Missense_Mutation p.R2600L 0.23 deleterious(0) possibly_damaging(0.899) TCGA-39-5011-01 20 62598311 62598311 C A ZNF512B Missense_Mutation p.R104M 0.26 deleterious(0) probably_damaging(0.998) TCGA-39-5011-01 20 745939 745939 G A SLC52A3 Silent p.G160G 0.27 TCGA-39-5011-01 21 10951288 10951288 G T TPTE Missense_Mutation p.L142I 0.08 tolerated(0.05) possibly_damaging(0.516) TCGA-39-5011-01 21 19666641 19666641 C A TMPRSS15 Missense_Mutation p.G811V 0.13 deleterious(0) probably_damaging(1) TCGA-39-5011-01 21 19666642 19666642 C A TMPRSS15 Missense_Mutation p.G811C 0.12 deleterious(0) probably_damaging(1) TCGA-39-5011-01 21 19744547 19744547 G T TMPRSS15 Missense_Mutation p.N209K 0.12 deleterious(0) possibly_damaging(0.694) TCGA-39-5011-01 21 31692141 31692141 A T KRTAP26-1 Nonsense_Mutation p.C71* 0.29 TCGA-39-5011-01 21 31869277 31869277 G T KRTAP19-4 Missense_Mutation p.P51Q 0.17 deleterious_low_confidence(0) unknown(0) TCGA-39-5011-01 21 32639088 32639088 G A TIAM1 Silent p.S67S 0.18 TCGA-39-5011-01 21 33954632 33954632 C G AP000275.65 Missense_Mutation p.D254H 0.19 tolerated_low_confidence(0.14) benign(0.006) TCGA-39-5011-01 21 40619740 40619740 C A BRWD1 Missense_Mutation p.V790L 0.14 tolerated(0.94) benign(0) TCGA-39-5011-01 21 43549825 43549825 T G UMODL1 Missense_Mutation p.N1359K 0.21 deleterious(0.04) possibly_damaging(0.801) TCGA-39-5011-01 21 43963631 43963631 A T SLC37A1 Missense_Mutation p.T217S 0.27 tolerated(1) benign(0.044) TCGA-39-5011-01 22 17071934 17071934 C A CCT8L2 Nonsense_Mutation p.G503* 0.21 TCGA-39-5011-01 22 21801049 21801049 G T HIC2 3'UTR 0.35 TCGA-39-5011-01 22 37602887 37602887 C A SSTR3 Missense_Mutation p.R319L 0.21 deleterious(0.01) possibly_damaging(0.9) TCGA-39-5011-01 22 42606885 42606885 T A TCF20 Missense_Mutation p.Q1476L 0.26 possibly_damaging(0.893) TCGA-39-5011-01 22 45258238 45258238 G T PRR5-ARHGAP8 Missense_Mutation p.Q565H 0.21 tolerated_low_confidence(0.08) benign(0.106) TCGA-39-5011-01 22 45691729 45691729 C A UPK3A 3'UTR 0.25 TCGA-39-5011-01 2 103141530 103141530 G T SLC9A4 Missense_Mutation p.K622N 0.13 tolerated(0.22) possibly_damaging(0.717) TCGA-39-5011-01 2 112526855 112526855 C A ANAPC1 3'UTR 0.13 TCGA-39-5011-01 2 112622466 112622466 T A ANAPC1 Missense_Mutation p.N250Y 0.14 deleterious(0.03) benign(0.037) TCGA-39-5011-01 2 114699902 114699902 G T ACTR3 Missense_Mutation p.R275I 0.19 deleterious(0) possibly_damaging(0.849) TCGA-39-5011-01 2 119699846 119699846 C A MARCO 5'UTR 0.30 TCGA-39-5011-01 2 133542357 133542357 C A NCKAP5 Missense_Mutation p.G676V 0.30 deleterious(0.01) probably_damaging(0.993) TCGA-39-5011-01 2 133542358 133542358 C A NCKAP5 Missense_Mutation p.G676C 0.29 deleterious(0) probably_damaging(0.999) TCGA-39-5011-01 2 141474339 141474339 G A LRP1B Silent p.S1935S 0.29 TCGA-39-5011-01 2 153515613 153515613 C A PRPF40A Nonsense_Mutation p.E834* 0.22 TCGA-39-5011-01 2 15557833 15557833 C A NBAS Missense_Mutation p.D861Y 0.17 deleterious(0) probably_damaging(0.954) TCGA-39-5011-01 2 160284875 160284875 C A BAZ2B Missense_Mutation p.A771S 0.21 possibly_damaging(0.506) TCGA-39-5011-01 2 160734909 160734909 C G LY75-CD302 Missense_Mutation p.G567A 0.17 deleterious(0) probably_damaging(0.992) TCGA-39-5011-01 2 168101865 168101865 C A XIRP2 Silent p.L1321L 0.24 TCGA-39-5011-01 2 168104366 168104366 A T XIRP2 Missense_Mutation p.D2155V 0.18 benign(0.386) TCGA-39-5011-01 2 168106863 168106863 G A XIRP2 Silent p.L2987L 0.17 TCGA-39-5011-01 2 168108435 168108435 A T XIRP2 Missense_Mutation p.Q3511H 0.13 benign(0.027) TCGA-39-5011-01 2 168994733 168994733 T A STK39 Splice_Site p.X281_splice 0.13 TCGA-39-5011-01 2 171686019 171686019 G C GAD1 Missense_Mutation p.K60N 0.19 tolerated_low_confidence(0.12) benign(0.075) TCGA-39-5011-01 2 176948601 176948601 C A EVX2 5'UTR 0.33 TCGA-39-5011-01 2 178416941 178416941 G A TTC30B Missense_Mutation p.S184L 0.19 tolerated(0.84) benign(0.001) TCGA-39-5011-01 2 179411950 179411950 G T TTN Missense_Mutation p.H31434Q 0.24 TCGA-39-5011-01 2 179427841 179427841 G T TTN Missense_Mutation p.P27673Q 0.20 TCGA-39-5011-01 2 179429041 179429041 G - TTN Frame_Shift_Del p.P27273Qfs*77 0.14 TCGA-39-5011-01 2 179576056 179576056 A T TTN Missense_Mutation p.F9303I 0.15 TCGA-39-5011-01 2 179577108 179577108 G T TTN Missense_Mutation p.Q9181K 0.18 TCGA-39-5011-01 2 179585861 179585861 C A TTN Nonsense_Mutation p.E7629* 0.20 TCGA-39-5011-01 2 179586845 179586845 G T TTN Silent p.P7515P 0.16 TCGA-39-5011-01 2 17998307 17998307 C A MSGN1 Nonsense_Mutation p.Y174* 0.21 TCGA-39-5011-01 2 185802767 185802767 C A ZNF804A Missense_Mutation p.H882N 0.21 tolerated(0.48) benign(0.047) TCGA-39-5011-01 2 203075509 203075509 G C SUMO1 Silent p.L62L 0.16 TCGA-39-5011-01 2 21249734 21249734 C A APOB Missense_Mutation p.G724C 0.20 probably_damaging(1) TCGA-39-5011-01 2 212652872 212652872 C A ERBB4 Missense_Mutation p.G145V 0.21 deleterious(0) probably_damaging(0.999) TCGA-39-5011-01 2 213921737 213921737 C T IKZF2 Missense_Mutation p.E76K 0.25 tolerated(0.59) benign(0.242) TCGA-39-5011-01 2 216209588 216209588 C T ATIC Silent p.N438N 0.14 TCGA-39-5011-01 2 220336675 220336675 C A SPEG Silent p.G1267G 0.32 TCGA-39-5011-01 2 220439512 220439512 G T INHA Missense_Mutation p.R122L 0.18 tolerated(0.36) benign(0.007) TCGA-39-5011-01 2 225670864 225670864 C A DOCK10 Missense_Mutation p.D1265Y 0.13 deleterious(0) probably_damaging(0.95) TCGA-39-5011-01 2 228395927 228395927 G T AGFG1 Splice_Site p.X272_splice 0.22 TCGA-39-5011-01 2 233322545 233322545 C A ALPI Missense_Mutation p.A275E 0.24 deleterious(0.02) possibly_damaging(0.671) TCGA-39-5011-01 2 233404488 233404488 C G CHRNG Missense_Mutation p.L11V 0.20 tolerated(0.19) benign(0.208) TCGA-39-5011-01 2 233990531 233990531 G C INPP5D Missense_Mutation p.E142D 0.26 tolerated(0.22) benign(0.044) TCGA-39-5011-01 2 234171874 234171874 G T ATG16L1 Missense_Mutation p.R103L 0.16 deleterious(0) possibly_damaging(0.753) TCGA-39-5011-01 2 241621864 241621864 G T AQP12B Missense_Mutation p.L131I 0.12 tolerated(0.16) benign(0.15) TCGA-39-5011-01 2 242757847 242757847 G T NEU4 Missense_Mutation p.G323C 0.35 tolerated(0.2) benign(0.001) TCGA-39-5011-01 2 26152180 26152180 C G KIF3C Missense_Mutation p.R761T 0.12 benign(0.354) TCGA-39-5011-01 2 26697440 26697440 G A OTOF Nonsense_Mutation p.Q1077* 0.12 TCGA-39-5011-01 2 39088980 39088980 C A DHX57 Splice_Site p.X191_splice 0.21 TCGA-39-5011-01 2 48734427 48734427 G T PPP1R21 Missense_Mutation p.R663L 0.20 deleterious(0) probably_damaging(0.914) TCGA-39-5011-01 2 51254925 51254925 G T NRXN1 Missense_Mutation p.R163S 0.19 tolerated(0.1) benign(0.001) TCGA-39-5011-01 2 55449604 55449604 G A CLHC1 5'UTR 0.28 TCGA-39-5011-01 2 56216102 56216102 T C MIR216A RNA 0.14 TCGA-39-5011-01 2 71827916 71827916 G T DYSF Missense_Mutation p.G1281C 0.09 deleterious(0) probably_damaging(0.959) TCGA-39-5011-01 2 71838406 71838406 C A DYSF Missense_Mutation p.P1330H 0.09 deleterious(0) probably_damaging(0.987) TCGA-39-5011-01 2 73478511 73478511 G T CCT7 Missense_Mutation p.G454V 0.22 deleterious(0) probably_damaging(0.983) TCGA-39-5011-01 2 73651877 73651877 G C ALMS1 Missense_Mutation p.A362P 0.17 benign(0.214) TCGA-39-5011-01 2 73957740 73957740 G A TPRKB Nonsense_Mutation p.Q130* 0.20 TCGA-39-5011-01 2 74593137 74593137 C A DCTN1 Silent p.P923P 0.16 TCGA-39-5011-01 2 89247033 89247033 C A IGKV1-5 Missense_Mutation p.R46L 0.18 deleterious(0.03) benign(0.346) TCGA-39-5011-01 2 89399800 89399800 G A IGKV1-16 Silent p.L10L 0.15 TCGA-39-5011-01 2 8958886 8958888 CCT AA KIDINS220 Frame_Shift_Del p.Q48Hfs*6 0.27 TCGA-39-5011-01 2 90108973 90108973 T A IGKV6D-41 Missense_Mutation p.S80T 0.11 tolerated(0.09) possibly_damaging(0.889) TCGA-39-5011-01 2 96048182 96048182 A T KCNIP3 Missense_Mutation p.I205F 0.21 tolerated(0.13) benign(0.223) TCGA-39-5011-01 2 97024902 97024902 A C NCAPH Missense_Mutation p.D443A 0.17 deleterious(0.04) benign(0.299) TCGA-39-5011-01 3 100352219 100352219 C A GPR128 Missense_Mutation p.Q149K 0.20 tolerated(0.11) benign(0.004) TCGA-39-5011-01 3 11301009 11301009 G T HRH1 Missense_Mutation p.G96C 0.32 deleterious(0) probably_damaging(0.998) TCGA-39-5011-01 3 113327012 113327012 G T SIDT1 Missense_Mutation p.R517L 0.25 deleterious(0.02) benign(0.334) TCGA-39-5011-01 3 122353954 122353954 G A PARP15 Missense_Mutation p.E554K 0.26 deleterious(0) probably_damaging(1) TCGA-39-5011-01 3 123458818 123458818 A G MYLK Missense_Mutation p.V135A 0.05 tolerated(0.7) benign(0.018) TCGA-39-5011-01 3 128202822 128202822 C A GATA2 Missense_Mutation p.A300S 0.25 deleterious(0.03) probably_damaging(0.992) TCGA-39-5011-01 3 130284416 130284416 A T COL6A6 Missense_Mutation p.T414S 0.18 tolerated(0.39) benign(0.26) TCGA-39-5011-01 3 140285008 140285008 G T CLSTN2 Missense_Mutation p.E927D 0.28 tolerated(0.23) benign(0.004) TCGA-39-5011-01 3 142548611 142548611 C A PCOLCE2 Missense_Mutation p.G263V 0.18 deleterious(0.02) benign(0.34) TCGA-39-5011-01 3 1444012 1444012 G T CNTN6 Missense_Mutation p.R943L 0.21 deleterious(0) possibly_damaging(0.672) TCGA-39-5011-01 3 150690517 150690517 G A CLRN1 5'Flank 0.22 TCGA-39-5011-01 3 151598441 151598441 G C SUCNR1 Missense_Mutation p.G37A 0.16 deleterious(0) probably_damaging(1) TCGA-39-5011-01 3 155632248 155632248 C T GMPS Silent p.T309T 0.23 TCGA-39-5011-01 3 156261003 156261004 - A SSR3 Frame_Shift_Ins p.G183Wfs*40 0.12 TCGA-39-5011-01 3 165548427 165548427 G T BCHE Missense_Mutation p.P132Q 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-39-5011-01 3 183700682 183700682 C A ABCC5 Silent p.S235S 0.28 TCGA-39-5011-01 3 183756277 183756277 G T HTR3D Missense_Mutation p.A334S 0.09 tolerated(0.2) possibly_damaging(0.759) TCGA-39-5011-01 3 186572341 186572341 G T ADIPOQ Missense_Mutation p.D195Y 0.09 deleterious(0) probably_damaging(0.96) TCGA-39-5011-01 3 186915376 186915376 A T RTP1 Missense_Mutation p.R25W 0.21 deleterious_low_confidence(0.01) benign(0.276) TCGA-39-5011-01 3 194080965 194080965 G T LRRC15 Missense_Mutation p.Q276K 0.19 tolerated(0.69) benign(0.149) TCGA-39-5011-01 3 194080998 194080998 G T LRRC15 Missense_Mutation p.Q265K 0.09 tolerated(0.07) benign(0.098) TCGA-39-5011-01 3 19556833 19556833 G A KCNH8 Missense_Mutation p.D819N 0.13 deleterious(0) probably_damaging(0.998) TCGA-39-5011-01 3 38263096 38263096 C T OXSR1 Missense_Mutation p.T173I 0.14 deleterious(0.04) possibly_damaging(0.904) TCGA-39-5011-01 3 38753905 38753905 G T SCN10A Missense_Mutation p.P1279Q 0.27 deleterious(0) probably_damaging(1) TCGA-39-5011-01 3 38755538 38755538 C G SCN10A Missense_Mutation p.E1239Q 0.26 tolerated(0.07) benign(0.005) TCGA-39-5011-01 3 42916387 42916387 C T CYP8B1 Missense_Mutation p.V308M 0.39 deleterious(0) probably_damaging(0.91) TCGA-39-5011-01 3 44763013 44763013 G T ZNF502 Missense_Mutation p.G235V 0.25 deleterious(0.01) probably_damaging(1) TCGA-39-5011-01 3 45996850 45996850 C A FYCO1 Missense_Mutation p.V1279L 0.24 tolerated(0.11) benign(0.1) TCGA-39-5011-01 3 52283303 52283303 G A PPM1M Silent p.R188R 0.35 TCGA-39-5011-01 3 52366325 52366325 G T DNAH1 Missense_Mutation p.D401Y 0.28 benign(0.299) TCGA-39-5011-01 3 53925852 53925852 C A SELK 5'UTR 0.32 TCGA-39-5011-01 3 70014251 70014251 G C MITF Missense_Mutation p.G472A 0.22 tolerated(0.08) benign(0.03) TCGA-39-5011-01 3 99514030 99514030 G T COL8A1 Missense_Mutation p.G429C 0.36 deleterious(0) unknown(0) TCGA-39-5011-01 4 104084291 104084291 T A CENPE Intron 0.24 TCGA-39-5011-01 4 123317432 123317432 G A ADAD1 Silent p.K208K 0.17 TCGA-39-5011-01 4 134084224 134084224 C A PCDH10 Missense_Mutation p.R964S 0.30 tolerated(0.15) probably_damaging(0.994) TCGA-39-5011-01 4 138451173 138451173 T A PCDH18 Silent p.S690S 0.27 TCGA-39-5011-01 4 170926865 170926865 T C MFAP3L Missense_Mutation p.H55R 0.17 tolerated(0.11) possibly_damaging(0.869) TCGA-39-5011-01 4 185339805 185339805 C T IRF2 Missense_Mutation p.R82K 0.16 deleterious(0) probably_damaging(0.995) TCGA-39-5011-01 4 25005547 25005547 G T LGI2 Silent p.I388I 0.18 TCGA-39-5011-01 4 40245579 40245579 C G RHOH Missense_Mutation p.F191L 0.18 tolerated(0.52) benign(0.001) TCGA-39-5011-01 4 437898 437898 T A ZNF721 Nonsense_Mutation p.K120* 0.19 TCGA-39-5011-01 4 46252502 46252502 C A GABRA2 Silent p.T393T 0.12 TCGA-39-5011-01 4 47405715 47405715 C A GABRB1 Silent p.A274A 0.20 TCGA-39-5011-01 4 5827303 5827303 G T CRMP1 Silent p.P629P 0.21 TCGA-39-5011-01 4 62775285 62775285 C A LPHN3 Missense_Mutation p.S564Y 0.21 deleterious(0.01) benign(0.022) TCGA-39-5011-01 4 62845485 62845485 C A LPHN3 Missense_Mutation p.Q936K 0.11 tolerated(0.41) probably_damaging(0.93) TCGA-39-5011-01 4 71115145 71115145 C A CSN3 Missense_Mutation p.T173N 0.08 tolerated(0.26) unknown(0) TCGA-39-5011-01 4 72622544 72622544 C A GC Missense_Mutation p.D326Y 0.25 deleterious(0) probably_damaging(0.948) TCGA-39-5011-01 4 73968111 73968111 C G ANKRD17 Missense_Mutation p.E1519Q 0.16 benign(0.313) TCGA-39-5011-01 4 74313253 74313253 C A AFP Silent p.T306T 0.13 TCGA-39-5011-01 4 74736328 74736328 G C CXCL1 3'UTR 0.19 TCGA-39-5011-01 4 75248486 75248486 G T EREG Missense_Mutation p.G135C 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-39-5011-01 4 759899 759899 C A PCGF3 3'UTR 0.14 TCGA-39-5011-01 4 76442124 76442124 G T THAP6 Missense_Mutation p.A75S 0.13 tolerated(0.06) benign(0.005) TCGA-39-5011-01 4 78082027 78082027 A G CCNG2 Missense_Mutation p.I144V 0.26 deleterious(0.01) possibly_damaging(0.545) TCGA-39-5011-01 4 81207680 81207680 C G FGF5 Missense_Mutation p.Q221E 0.20 tolerated(0.36) possibly_damaging(0.449) TCGA-39-5011-01 4 81967464 81967465 - T BMP3 Frame_Shift_Ins p.Q298Afs*13 0.26 TCGA-39-5011-01 4 8229916 8229916 C G SH3TC1 Missense_Mutation p.A832G 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-39-5011-01 4 88996933 88996933 G A PKD2 3'UTR 0.20 TCGA-39-5011-01 4 89022440 89022440 G T ABCG2 Missense_Mutation p.Q437K 0.19 deleterious(0.03) possibly_damaging(0.783) TCGA-39-5011-01 4 90169664 90169664 C T GPRIN3 Missense_Mutation p.G533E 0.13 tolerated(0.13) benign(0.017) TCGA-39-5011-01 4 94690456 94690456 C T GRID2 Missense_Mutation p.T819I 0.16 deleterious(0.02) benign(0.044) TCGA-39-5011-01 5 100191836 100191836 C A ST8SIA4 Silent p.P256P 0.30 TCGA-39-5011-01 5 11018128 11018128 G T CTNND2 Missense_Mutation p.N1014K 0.41 deleterious(0.01) benign(0.121) TCGA-39-5011-01 5 115329439 115329439 G T AQPEP Missense_Mutation p.W421L 0.35 deleterious(0) probably_damaging(0.999) TCGA-39-5011-01 5 118500953 118500953 G T DMXL1 Missense_Mutation p.A1650S 0.17 tolerated(0.36) probably_damaging(1) TCGA-39-5011-01 5 121405762 121405762 G T LOX Silent p.G411G 0.31 TCGA-39-5011-01 5 132086617 132086617 G A CCNI2 Silent p.R234R 0.32 TCGA-39-5011-01 5 132939686 132939686 T G FSTL4 Splice_Site 0.27 TCGA-39-5011-01 5 140554780 140554780 G T PCDHB7 Missense_Mutation p.Q788H 0.07 tolerated_low_confidence(0.11) benign(0.003) TCGA-39-5011-01 5 140589960 140589960 A T PCDHB12 Missense_Mutation p.Q494L 0.24 tolerated_low_confidence(0.1) benign(0.022) TCGA-39-5011-01 5 143586707 143586707 C A KCTD16 Missense_Mutation p.Q144K 0.18 tolerated(0.73) probably_damaging(0.965) TCGA-39-5011-01 5 149283250 149283250 G T PDE6A Missense_Mutation p.N358K 0.22 deleterious(0.02) probably_damaging(0.995) TCGA-39-5011-01 5 149574442 149574442 G T SLC6A7 Missense_Mutation p.R62L 0.27 deleterious(0) benign(0.266) TCGA-39-5011-01 5 149602638 149602638 C A CAMK2A Silent p.S460S 0.38 TCGA-39-5011-01 5 151784093 151784094 - T NMUR2 Frame_Shift_Ins p.N194Kfs*57 0.24 TCGA-39-5011-01 5 151784632 151784632 G T NMUR2 Missense_Mutation p.Q15K 0.24 tolerated(0.63) benign(0.08) TCGA-39-5011-01 5 157218945 157218945 T A CLINT1 Silent p.P382P 0.29 TCGA-39-5011-01 5 158139300 158139300 C A EBF1 Missense_Mutation p.V471L 0.20 tolerated_low_confidence(0.25) benign(0.003) TCGA-39-5011-01 5 15928282 15928282 C G FBXL7 Missense_Mutation p.C137W 0.17 deleterious(0) probably_damaging(0.988) TCGA-39-5011-01 5 160047857 160047857 G A ATP10B Missense_Mutation p.S638L 0.28 tolerated(0.1) benign(0.12) TCGA-39-5011-01 5 167850916 167850916 G T WWC1 Missense_Mutation p.M551I 0.30 tolerated(0.23) benign(0) TCGA-39-5011-01 5 170669795 170669795 C T RANBP17 Missense_Mutation p.T916I 0.27 deleterious(0.02) possibly_damaging(0.69) TCGA-39-5011-01 5 176301352 176301352 C A UNC5A Missense_Mutation p.P388H 0.23 tolerated(0.06) benign(0.001) TCGA-39-5011-01 5 176951370 176951370 G C FAM193B Silent p.G704G 0.20 TCGA-39-5011-01 5 24491882 24491882 C A CDH10 Missense_Mutation p.S560I 0.25 tolerated(0.07) possibly_damaging(0.589) TCGA-39-5011-01 5 33527340 33527341 GG TGT ADAMTS12 Frame_Shift_Ins p.R1581Kfs*87 0.13 TCGA-39-5011-01 5 33614421 33614421 G T ADAMTS12 Missense_Mutation p.L817I 0.20 tolerated(0.39) benign(0.058) TCGA-39-5011-01 5 33630989 33630989 T A ADAMTS12 Missense_Mutation p.I640L 0.15 tolerated(0.39) benign(0.133) TCGA-39-5011-01 5 36066862 36066862 C A UGT3A2 Silent p.V10V 0.15 TCGA-39-5011-01 5 41055895 41055895 C A MROH2B Missense_Mutation p.A328S 0.18 tolerated(0.71) benign(0.005) TCGA-39-5011-01 5 42719419 42719419 C A GHR Missense_Mutation p.P604T 0.30 deleterious(0.02) probably_damaging(1) TCGA-39-5011-01 5 482675 482675 G T SLC9A3 Silent p.T448T 0.21 TCGA-39-5011-01 5 5303785 5303785 C A ADAMTS16 Missense_Mutation p.T1031N 0.21 tolerated(0.53) benign(0.024) TCGA-39-5011-01 5 56152463 56152463 G T MAP3K1 Missense_Mutation p.L173F 0.18 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-39-5011-01 5 63257103 63257103 C A HTR1A Missense_Mutation p.R148S 0.30 deleterious(0.02) probably_damaging(1) TCGA-39-5011-01 5 634059 634059 C T CEP72 Nonsense_Mutation p.Q230* 0.32 TCGA-39-5011-01 5 66479084 66479084 G T CD180 Missense_Mutation p.H529Q 0.39 deleterious(0.03) benign(0.023) TCGA-39-5011-01 5 71757189 71757189 C A ZNF366 Silent p.P45P 0.30 TCGA-39-5011-01 5 7727315 7727315 G A ADCY2 Silent p.V604V 0.33 TCGA-39-5011-01 5 79854772 79854772 C A ANKRD34B Missense_Mutation p.R356I 0.31 deleterious(0.02) benign(0.352) TCGA-39-5011-01 5 87492086 87492086 C A TMEM161B Missense_Mutation p.C469F 0.38 deleterious(0) probably_damaging(0.999) TCGA-39-5011-01 5 9122906 9122906 G T SEMA5A Missense_Mutation p.P548Q 0.07 tolerated(0.12) benign(0.001) TCGA-39-5011-01 5 94030670 94030670 G C ANKRD32 Missense_Mutation p.E944Q 0.27 tolerated(0.22) benign(0.018) TCGA-39-5011-01 6 101053569 101053569 G A ASCC3 Silent p.L1684L 0.33 TCGA-39-5011-01 6 101296458 101296459 - A ASCC3 Frame_Shift_Ins p.P123Sfs*10 0.15 TCGA-39-5011-01 6 109983868 109983868 T A AK9 Splice_Site p.X111_splice 0.29 TCGA-39-5011-01 6 111636569 111636569 C T REV3L Silent p.L2789L 0.14 TCGA-39-5011-01 6 112466041 112466041 C A LAMA4 Missense_Mutation p.Q816H 0.10 tolerated(0.33) possibly_damaging(0.797) TCGA-39-5011-01 6 117201815 117201815 G C RFX6 Silent p.A163A 0.18 TCGA-39-5011-01 6 117248308 117248308 G T RFX6 Silent p.V668V 0.20 TCGA-39-5011-01 6 117248309 117248309 G T RFX6 Missense_Mutation p.G669C 0.20 tolerated_low_confidence(0.19) possibly_damaging(0.681) TCGA-39-5011-01 6 117642545 117642545 C T ROS1 Missense_Mutation p.R1885K 0.23 tolerated(0.52) benign(0.005) TCGA-39-5011-01 6 121560335 121560335 C A TBC1D32 Splice_Site p.X749_splice 0.11 TCGA-39-5011-01 6 12294237 12294237 C T EDN1 Silent p.P99P 0.20 TCGA-39-5011-01 6 126211075 126211075 T A NCOA7 Missense_Mutation p.N625K 0.08 tolerated(0.18) benign(0.002) TCGA-39-5011-01 6 132021946 132021946 A - OR2A4 Frame_Shift_Del p.L199Wfs*16 0.08 TCGA-39-5011-01 6 132043431 132043431 G T ENPP3 Missense_Mutation p.K544N 0.09 deleterious(0) possibly_damaging(0.855) TCGA-39-5011-01 6 133804225 133804225 C A EYA4 Missense_Mutation p.T388N 0.08 deleterious(0.03) probably_damaging(0.988) TCGA-39-5011-01 6 139167730 139167730 T A ECT2L Missense_Mutation p.H273Q 0.12 tolerated(0.5) benign(0.002) TCGA-39-5011-01 6 139694570 139694570 C A CITED2 Missense_Mutation p.G171V 0.32 deleterious(0.02) benign(0.154) TCGA-39-5011-01 6 142741048 142741048 G T GPR126 Silent p.V1042V 0.21 TCGA-39-5011-01 6 144780420 144780420 C T UTRN Silent p.F879F 0.05 TCGA-39-5011-01 6 144783962 144783962 A G UTRN Missense_Mutation p.H1009R 0.25 tolerated(0.22) benign(0.002) TCGA-39-5011-01 6 151627009 151627009 A T AKAP12 Missense_Mutation p.Q97L 0.20 tolerated_low_confidence(0.1) benign(0.069) TCGA-39-5011-01 6 152847251 152847251 C A SYNE1 Silent p.L63L 0.13 TCGA-39-5011-01 6 154412133 154412133 G C OPRM1 Missense_Mutation p.W323C 0.25 deleterious(0) probably_damaging(1) TCGA-39-5011-01 6 154412558 154412558 C T OPRM1 Missense_Mutation p.T465I 0.11 deleterious(0.02) benign(0.061) TCGA-39-5011-01 6 165809930 165809930 G T PDE10A Missense_Mutation p.H433N 0.25 tolerated(0.14) benign(0.012) TCGA-39-5011-01 6 166862232 166862232 C T RPS6KA2 Missense_Mutation p.D446N 0.16 tolerated(0.89) benign(0) TCGA-39-5011-01 6 25777250 25777250 A G SLC17A4 Intron 0.17 TCGA-39-5011-01 6 26217650 26217650 T G HIST1H2AE 3'UTR 0.17 TCGA-39-5011-01 6 2779665 2779665 G A WRNIP1 Silent p.L475L 0.26 TCGA-39-5011-01 6 29364707 29364707 A - OR12D2 Frame_Shift_Del p.M79Cfs*18 0.14 TCGA-39-5011-01 6 29795824 29795824 G T HLA-G Missense_Mutation p.G25V 0.11 deleterious_low_confidence(0.01) benign(0.4) TCGA-39-5011-01 6 32163359 32163359 A T NOTCH4 Missense_Mutation p.L1956Q 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-39-5011-01 6 32187439 32187439 G A NOTCH4 Silent p.L480L 0.16 TCGA-39-5011-01 6 3225906 3225906 C A TUBB2B Silent p.L139L 0.07 TCGA-39-5011-01 6 32411622 32411622 G - HLA-DRA Frame_Shift_Del p.T235Pfs*30 0.11 TCGA-39-5011-01 6 33284465 33284465 C T ZBTB22 Missense_Mutation p.A77T 0.20 deleterious(0) probably_damaging(0.999) TCGA-39-5011-01 6 40399514 40399514 G T LRFN2 Missense_Mutation p.P447T 0.13 deleterious(0.03) possibly_damaging(0.826) TCGA-39-5011-01 6 43018925 43018925 C T CUL7 Silent p.V422V 0.23 TCGA-39-5011-01 6 46766384 46766384 G T MEP1A Splice_Site p.X62_splice 0.14 TCGA-39-5011-01 6 49704126 49704126 G T CRISP3 Missense_Mutation p.P79H 0.27 tolerated(0.06) possibly_damaging(0.786) TCGA-39-5011-01 6 49705075 49705075 G T CRISP3 Missense_Mutation p.A35D 0.16 deleterious(0) possibly_damaging(0.894) TCGA-39-5011-01 6 49753753 49753753 C T PGK2 Nonsense_Mutation p.W383* 0.08 TCGA-39-5011-01 6 50810876 50810876 C G TFAP2B Missense_Mutation p.P385R 0.19 deleterious(0.02) benign(0.324) TCGA-39-5011-01 6 55939028 55939028 A T COL21A1 Splice_Site p.X655_splice 0.25 TCGA-39-5011-01 6 56400092 56400092 T A DST Splice_Site p.X2968_splice 0.28 TCGA-39-5011-01 6 62757843 62757843 C A KHDRBS2 Missense_Mutation p.Q92H 0.13 deleterious(0) probably_damaging(0.988) TCGA-39-5011-01 6 69684665 69684665 A G BAI3 Silent p.E512E 0.07 TCGA-39-5011-01 6 70042813 70042813 A T BAI3 Splice_Site p.X1035_splice 0.22 TCGA-39-5011-01 6 70411334 70411334 C T LMBRD1 Splice_Site p.X361_splice 0.30 TCGA-39-5011-01 6 82936988 82936988 A G IBTK Missense_Mutation p.L192P 0.19 deleterious(0) probably_damaging(0.992) TCGA-39-5011-01 7 100086565 100086565 G T NYAP1 Silent p.S407S 0.27 TCGA-39-5011-01 7 100218582 100218582 C A TFR2 Missense_Mutation p.Q768H 0.10 deleterious(0.01) possibly_damaging(0.878) TCGA-39-5011-01 7 100452270 100452270 G C SLC12A9 Silent p.L70L 0.12 TCGA-39-5011-01 7 100466148 100466148 G T TRIP6 Missense_Mutation p.R132L 0.13 tolerated(0.16) benign(0.003) TCGA-39-5011-01 7 100551917 100551917 C A MUC3A Missense_Mutation p.T223K 0.19 deleterious(0.01) possibly_damaging(0.788) TCGA-39-5011-01 7 101847742 101847742 G C CUX1 Missense_Mutation p.Q1004H 0.15 deleterious(0) unknown(0) TCGA-39-5011-01 7 106508561 106508561 G A PIK3CG Missense_Mutation p.M185I 0.42 deleterious(0.04) benign(0) TCGA-39-5011-01 7 106508562 106508562 G A PIK3CG Missense_Mutation p.A186T 0.42 tolerated(0.59) benign(0.007) TCGA-39-5011-01 7 107398869 107398869 C T CBLL1 Missense_Mutation p.P241L 0.11 tolerated(0.1) probably_damaging(0.939) TCGA-39-5011-01 7 107626730 107626730 A T LAMB1 Missense_Mutation p.Y168N 0.39 deleterious(0.02) probably_damaging(0.962) TCGA-39-5011-01 7 107824690 107824690 A T NRCAM Missense_Mutation p.W767R 0.47 deleterious(0) probably_damaging(1) TCGA-39-5011-01 7 113518637 113518637 C A PPP1R3A Missense_Mutation p.C837F 0.10 tolerated(0.7) benign(0.003) TCGA-39-5011-01 7 114066676 114066676 G T FOXP2 Missense_Mutation p.S37I 0.58 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-39-5011-01 7 11446968 11446968 G A THSD7A Missense_Mutation p.P1294L 0.26 tolerated(0.12) benign(0.102) TCGA-39-5011-01 7 122811859 122811859 G C SLC13A1 Missense_Mutation p.L110V 0.11 deleterious(0) probably_damaging(0.98) TCGA-39-5011-01 7 123296148 123296148 G T LMOD2 Missense_Mutation p.R44L 0.38 tolerated(0.7) possibly_damaging(0.65) TCGA-39-5011-01 7 128413885 128413885 G A OPN1SW Missense_Mutation p.R249C 0.48 deleterious(0.04) benign(0.032) TCGA-39-5011-01 7 128807697 128807697 G T TSPAN33 Silent p.R278R 0.13 TCGA-39-5011-01 7 129091527 129091527 A T STRIP2 Silent p.L116L 0.08 TCGA-39-5011-01 7 129098208 129098208 G C STRIP2 Silent p.L397L 0.20 TCGA-39-5011-01 7 129357149 129357149 G T NRF1 Missense_Mutation p.A386S 0.18 tolerated(0.1) benign(0.368) TCGA-39-5011-01 7 131815121 131815121 C A PLXNA4 3'UTR 0.25 TCGA-39-5011-01 7 131817959 131817959 C A PLXNA4 Splice_Site p.X1813_splice 0.22 TCGA-39-5011-01 7 136938254 136938254 G A PTN Silent p.T82T 0.14 TCGA-39-5011-01 7 138854074 138854074 G T TTC26 Missense_Mutation p.V349L 0.27 deleterious(0) possibly_damaging(0.694) TCGA-39-5011-01 7 139228975 139228975 A T CLEC2L Splice_Site p.X178_splice 0.22 TCGA-39-5011-01 7 139829302 139829302 G T KDM7A Missense_Mutation p.R184S 0.49 deleterious(0.03) benign(0.373) TCGA-39-5011-01 7 140246654 140246654 G T DENND2A Missense_Mutation p.P708Q 0.49 deleterious(0) probably_damaging(0.998) TCGA-39-5011-01 7 141418926 141418926 G A WEE2 Missense_Mutation p.E214K 0.20 deleterious(0.02) probably_damaging(0.951) TCGA-39-5011-01 7 141450151 141450151 G C SSBP1 Missense_Mutation p.E148D 0.14 tolerated_low_confidence(0.25) benign(0.003) TCGA-39-5011-01 7 141629856 141629856 G T CLEC5A 3'UTR 0.16 TCGA-39-5011-01 7 141734115 141734115 C A MGAM Missense_Mutation p.H575N 0.24 tolerated(0.27) benign(0.012) TCGA-39-5011-01 7 141794628 141794628 C A MGAM Missense_Mutation p.P1579T 0.24 deleterious(0.05) possibly_damaging(0.894) TCGA-39-5011-01 7 142099643 142099643 C A TRBV7-8 Missense_Mutation p.W53C 0.10 deleterious(0.02) probably_damaging(0.981) TCGA-39-5011-01 7 142428734 142428734 A C TRBV28 Missense_Mutation p.K32Q 0.21 tolerated(0.35) benign(0.308) TCGA-39-5011-01 7 143657591 143657591 C A OR2F1 Missense_Mutation p.H176Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-39-5011-01 7 149489791 149489791 C T SSPO RNA 0.26 TCGA-39-5011-01 7 150069258 150069258 C T REPIN1 Missense_Mutation p.H367Y 0.25 deleterious(0) probably_damaging(0.995) TCGA-39-5011-01 7 150389670 150389670 A G GIMAP2 Missense_Mutation p.Y99C 0.18 deleterious(0.02) possibly_damaging(0.716) TCGA-39-5011-01 7 150648624 150648624 G A KCNH2 Silent p.F619F 0.20 TCGA-39-5011-01 7 150761853 150761853 A T SLC4A2 Missense_Mutation p.Q153L 0.12 deleterious_low_confidence(0.05) possibly_damaging(0.775) TCGA-39-5011-01 7 20683161 20683161 G T ABCB5 Missense_Mutation p.G195V 0.17 deleterious(0) probably_damaging(0.993) TCGA-39-5011-01 7 20795188 20795188 G T ABCB5 Nonsense_Mutation p.E1239* 0.20 TCGA-39-5011-01 7 21470079 21470079 G T SP4 Silent p.T432T 0.27 TCGA-39-5011-01 7 30702345 30702345 C A CRHR2 Missense_Mutation p.R248L 0.29 deleterious(0.01) benign(0.109) TCGA-39-5011-01 7 45743046 45743046 G A ADCY1 Silent p.P842P 0.13 TCGA-39-5011-01 7 45748053 45748053 C A ADCY1 Silent p.V974V 0.17 TCGA-39-5011-01 7 55752959 55752959 G T RNU6-389P 5'Flank 0.22 TCGA-39-5011-01 7 65157731 65157731 T A INTS4L2 RNA 0.16 TCGA-39-5011-01 7 66582524 66582524 C G TYW1 Missense_Mutation p.D539E 0.15 tolerated(0.92) benign(0.003) TCGA-39-5011-01 7 72645903 72645903 G T NCF1B RNA 0.18 TCGA-39-5011-01 7 72658011 72658011 G T GTF2IRD2P1 RNA 0.18 TCGA-39-5011-01 7 73020081 73020081 C T MLXIPL Missense_Mutation p.D280N 0.13 deleterious(0) possibly_damaging(0.898) TCGA-39-5011-01 7 87144666 87144666 C A ABCB1 Nonsense_Mutation p.G1055* 0.43 TCGA-39-5011-01 7 87144667 87144667 C A ABCB1 Missense_Mutation p.Q1054H 0.44 deleterious(0.04) benign(0.255) TCGA-39-5011-01 7 91936672 91936672 G T ANKIB1 Splice_Site p.X63_splice 0.14 TCGA-39-5011-01 7 92987740 92987740 A G CCDC132 Missense_Mutation p.K963E 0.46 deleterious(0.02) benign(0.365) TCGA-39-5011-01 7 94024275 94024275 C T COL1A2 5'UTR 0.16 TCGA-39-5011-01 7 94217885 94217885 C T SGCE Intron 0.35 TCGA-39-5011-01 8 10465559 10465559 G T RP1L1 Missense_Mutation p.Q2017K 0.27 unknown(0) TCGA-39-5011-01 8 10480135 10480135 C G RP1L1 Missense_Mutation p.V193L 0.27 probably_damaging(0.999) TCGA-39-5011-01 8 106814232 106814232 G C ZFPM2 Missense_Mutation p.G641A 0.15 tolerated(1) benign(0.009) TCGA-39-5011-01 8 113237053 113237053 C T CSMD3 Missense_Mutation p.G3691R 0.08 tolerated(0.06) probably_damaging(0.944) TCGA-39-5011-01 8 113697824 113697824 C A CSMD3 Missense_Mutation p.D765Y 0.32 deleterious(0) probably_damaging(1) TCGA-39-5011-01 8 120118048 120118048 G C COLEC10 Missense_Mutation p.G151A 0.08 deleterious(0) probably_damaging(0.999) TCGA-39-5011-01 8 120592381 120592381 C T ENPP2 Silent p.R637R 0.16 TCGA-39-5011-01 8 120598437 120598437 C A ENPP2 Missense_Mutation p.W504C 0.07 deleterious(0.01) probably_damaging(0.992) TCGA-39-5011-01 8 124989658 124989658 G T FER1L6 Missense_Mutation p.G291V 0.37 deleterious(0.01) probably_damaging(0.98) TCGA-39-5011-01 8 131916192 131916192 C T ADCY8 Silent p.K579K 0.32 TCGA-39-5011-01 8 133885461 133885461 C A TG Nonsense_Mutation p.Y211* 0.11 TCGA-39-5011-01 8 133978853 133978853 T G TG Missense_Mutation p.V1866G 0.14 deleterious(0) possibly_damaging(0.878) TCGA-39-5011-01 8 141889732 141889732 A G PTK2 Missense_Mutation p.I67T 0.05 deleterious(0) possibly_damaging(0.716) TCGA-39-5011-01 8 2021472 2021472 G T MYOM2 Missense_Mutation p.A338S 0.29 deleterious(0.04) possibly_damaging(0.884) TCGA-39-5011-01 8 2071135 2071135 C A MYOM2 Missense_Mutation p.T1155N 0.25 deleterious(0.02) probably_damaging(0.974) TCGA-39-5011-01 8 2855579 2855579 C A CSMD1 Missense_Mutation p.Q2777H 0.20 probably_damaging(0.999) TCGA-39-5011-01 8 2886908 2886908 G T CSMD1 Silent p.G2596G 0.29 TCGA-39-5011-01 8 30701014 30701014 C A TEX15 Silent p.G1840G 0.25 TCGA-39-5011-01 8 36642105 36642105 G T KCNU1 Missense_Mutation p.K59N 0.25 tolerated(0.2) possibly_damaging(0.47) TCGA-39-5011-01 8 36793199 36793199 G T KCNU1 Missense_Mutation p.D1071Y 0.27 deleterious(0.02) benign(0.177) TCGA-39-5011-01 8 42612119 42612119 C A CHRNA6 Missense_Mutation p.R109L 0.28 deleterious(0) possibly_damaging(0.869) TCGA-39-5011-01 8 48716040 48716040 T C PRKDC Missense_Mutation p.N3249S 0.24 benign(0.02) TCGA-39-5011-01 8 48739237 48739237 G A PRKDC Silent p.L2920L 0.22 TCGA-39-5011-01 8 49832725 49832725 C T SNAI2 Missense_Mutation p.D119N 0.25 tolerated(0.48) benign(0.013) TCGA-39-5011-01 8 52323876 52323876 C A PXDNL Nonsense_Mutation p.E666* 0.21 TCGA-39-5011-01 8 53569297 53569297 G A RB1CC1 Missense_Mutation p.S1031F 0.22 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-39-5011-01 8 77765010 77765010 T A ZFHX4 Nonsense_Mutation p.C1951* 0.23 TCGA-39-5011-01 8 89054003 89054003 C T MMP16 Missense_Mutation p.G504R 0.24 deleterious(0) possibly_damaging(0.896) TCGA-39-5011-01 8 95272489 95272489 T A GEM Silent p.I81I 0.17 TCGA-39-5011-01 8 97156778 97156778 G T GDF6 3'UTR 0.23 TCGA-39-5011-01 8 99140714 99140714 G T POP1 Missense_Mutation p.M144I 0.13 deleterious(0) probably_damaging(1) TCGA-39-5011-01 9 106889672 106889672 G A SMC2 Missense_Mutation p.E901K 0.23 tolerated(0.84) benign(0.004) TCGA-39-5011-01 9 107267129 107267129 C A OR13F1 Missense_Mutation p.Q196K 0.21 tolerated(0.65) benign(0.015) TCGA-39-5011-01 9 107367566 107367566 G A OR13C2 Silent p.L115L 0.03 TCGA-39-5011-01 9 107380143 107380143 G A OR13C9 Silent p.L115L 0.21 TCGA-39-5011-01 9 107574879 107574879 C A ABCA1 Silent p.R1342R 0.17 TCGA-39-5011-01 9 107574880 107574880 C A ABCA1 Missense_Mutation p.R1342L 0.18 deleterious(0.01) probably_damaging(1) TCGA-39-5011-01 9 108536200 108536200 A T TMEM38B Missense_Mutation p.T239S 0.51 tolerated(0.4) benign(0.005) TCGA-39-5011-01 9 109697872 109697872 C G ZNF462 Missense_Mutation p.L2069V 0.19 probably_damaging(0.997) TCGA-39-5011-01 9 112930690 112930690 C T PALM2-AKAP2 Silent p.A1075A 0.11 TCGA-39-5011-01 9 120475213 120475213 G A TLR4 Silent p.L269L 0.03 TCGA-39-5011-01 9 120475225 120475225 C A TLR4 Missense_Mutation p.D273E 0.20 tolerated(0.31) benign(0.009) TCGA-39-5011-01 9 120475350 120475350 T C TLR4 Missense_Mutation p.L315P 0.22 deleterious(0) probably_damaging(0.999) TCGA-39-5011-01 9 123898206 123898206 T C CNTRL Silent p.D716D 0.10 TCGA-39-5011-01 9 125621200 125621200 C A RC3H2 Silent p.P677P 0.23 TCGA-39-5011-01 9 126776437 126776437 C A LHX2 Nonsense_Mutation p.Y106* 0.17 TCGA-39-5011-01 9 127920593 127920593 T C PPP6C Silent p.K139K 0.03 TCGA-39-5011-01 9 131107796 131107796 G T SLC27A4 Missense_Mutation p.R175L 0.13 deleterious(0.03) benign(0.014) TCGA-39-5011-01 9 133507341 133507341 A G FUBP3 Silent p.P455P 0.26 TCGA-39-5011-01 9 133577523 133577523 A G EXOSC2 Silent p.L166L 0.51 TCGA-39-5011-01 9 134394333 134394333 G A POMT1 Missense_Mutation p.R514Q 0.16 deleterious(0.03) probably_damaging(0.969) TCGA-39-5011-01 9 135202120 135202120 G A SETX Missense_Mutation p.P1622L 0.23 tolerated(0.06) benign(0.005) TCGA-39-5011-01 9 136216547 136216547 G A RPL7A Missense_Mutation p.R89H 0.07 tolerated(0.21) benign(0.001) TCGA-39-5011-01 9 140033954 140033954 C A GRIN1 Missense_Mutation p.L6M 0.17 tolerated_low_confidence(0.08) benign(0.13) TCGA-39-5011-01 9 18928477 18928477 C T FAM154A Missense_Mutation p.R333H 0.31 tolerated(0.59) benign(0.052) TCGA-39-5011-01 9 19360281 19360281 G T DENND4C Missense_Mutation p.V1685L 0.25 deleterious(0.01) benign(0.201) TCGA-39-5011-01 9 33922774 33922774 A T UBAP2 Missense_Mutation p.Y1059N 0.08 deleterious(0) unknown(0) TCGA-39-5011-01 9 40774786 40774786 C A ZNF658 Missense_Mutation p.K163N 0.26 tolerated(0.06) benign(0.42) TCGA-39-5011-01 9 43630674 43630674 A T SPATA31A6 Missense_Mutation p.L10I 0.46 tolerated(0.39) benign(0.115) TCGA-39-5011-01 9 43630709 43630709 G C SPATA31A6 5'UTR 0.17 TCGA-39-5011-01 9 43822643 43822643 A T CNTNAP3B Silent p.R399R 0.27 TCGA-39-5011-01 9 73152212 73152212 C T TRPM3 Missense_Mutation p.G1261R 0.13 deleterious(0.03) probably_damaging(0.98) TCGA-39-5011-01 9 77598720 77598720 T C C9orf41 Missense_Mutation p.Y398C 0.27 deleterious(0) probably_damaging(1) TCGA-39-5011-01 9 90503020 90503020 C A SPATA31E1 Silent p.A1206A 0.23 TCGA-39-5011-01 9 90503021 90503021 C A SPATA31E1 Missense_Mutation p.H1207N 0.23 tolerated(0.31) benign(0) TCGA-39-5011-01 9 93657990 93657990 C G SYK 3'UTR 0.42 TCGA-39-5011-01 X 100808335 100808335 G T ARMCX1 Missense_Mutation p.S141I 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.548) TCGA-39-5011-01 X 100880566 100880566 G A ARMCX3 Silent p.R199R 0.18 TCGA-39-5011-01 X 10181930 10181930 G T CLCN4 Missense_Mutation p.A596S 0.16 deleterious(0) probably_damaging(0.993) TCGA-39-5011-01 X 101970986 101970986 G T GPRASP2 Missense_Mutation p.A397S 0.19 tolerated(0.31) benign(0.021) TCGA-39-5011-01 X 111195463 111195463 G A TRPC5 Silent p.N62N 0.14 TCGA-39-5011-01 X 129149460 129149460 G A BCORL1 Silent p.K904K 0.25 TCGA-39-5011-01 X 133609230 133609230 G T HPRT1 Missense_Mutation p.D52Y 0.23 tolerated(0.09) probably_damaging(0.982) TCGA-39-5011-01 X 135430399 135430399 C A GPR112 Missense_Mutation p.Q1512K 0.25 deleterious(0) benign(0.265) TCGA-39-5011-01 X 140993280 140993280 C A MAGEC1 Missense_Mutation p.D30E 0.29 deleterious_low_confidence(0.04) benign(0.417) TCGA-39-5011-01 X 144906090 144906090 A T SLITRK2 Missense_Mutation p.Q716L 0.22 tolerated(0.33) benign(0.028) TCGA-39-5011-01 X 144906092 144906092 G T SLITRK2 Nonsense_Mutation p.E717* 0.23 TCGA-39-5011-01 X 147063060 147063060 G T FMR1NB Missense_Mutation p.E46D 0.21 tolerated(0.09) benign(0.005) TCGA-39-5011-01 X 152482391 152482391 C A MAGEA1 Missense_Mutation p.G207V 0.23 deleterious(0) benign(0.287) TCGA-39-5011-01 X 153179300 153179300 C A ARHGAP4 Missense_Mutation p.D396Y 0.17 tolerated(0.95) probably_damaging(0.927) TCGA-39-5011-01 X 22292445 22292445 A T ZNF645 3'UTR 0.25 TCGA-39-5011-01 X 24597533 24597533 G A PCYT1B Missense_Mutation p.S203L 0.25 deleterious(0) probably_damaging(0.989) TCGA-39-5011-01 X 26213093 26213093 C A MAGEB6 Missense_Mutation p.A377D 0.21 deleterious(0) benign(0.329) TCGA-39-5011-01 X 30864726 30864726 T A TAB3 Missense_Mutation p.R582S 0.12 deleterious(0) probably_damaging(0.996) TCGA-39-5011-01 X 32408274 32408274 G A DMD Missense_Mutation p.H1420Y 0.21 possibly_damaging(0.677) TCGA-39-5011-01 X 37026668 37026668 G C FAM47C Missense_Mutation p.C62S 0.20 tolerated(0.14) benign(0.039) TCGA-39-5011-01 X 39911544 39911544 C T BCOR Missense_Mutation p.E1696K 0.15 deleterious(0) probably_damaging(0.993) TCGA-39-5011-01 X 51488447 51488447 C T GSPT2 Silent p.F575F 0.10 TCGA-39-5011-01 X 53284002 53284002 G T IQSEC2 Missense_Mutation p.R371S 0.25 deleterious(0) probably_damaging(0.951) TCGA-39-5011-01 X 70607228 70607228 G T TAF1 Missense_Mutation p.V802L 0.22 tolerated(0.12) benign(0.068) TCGA-39-5011-01 X 77254170 77254170 G T ATP7A Missense_Mutation p.R511M 0.18 tolerated(0.09) probably_damaging(0.976) TCGA-39-5011-01 X 84362824 84362824 A G SATL1 Missense_Mutation p.L384P 0.13 tolerated(0.35) probably_damaging(0.996) TCGA-39-5016-01 10 103898705 103898705 G A PPRC1 Missense_Mutation p.G187R 0.34 tolerated(0.1) probably_damaging(0.999) TCGA-39-5016-01 10 114202056 114202056 T A ZDHHC6 Missense_Mutation p.Y138F 0.15 tolerated(0.61) benign(0.001) TCGA-39-5016-01 10 115388679 115388679 G C NRAP Missense_Mutation p.S714R 0.27 deleterious(0) probably_damaging(0.965) TCGA-39-5016-01 10 120514315 120514315 C A CACUL1 5'UTR 0.23 TCGA-39-5016-01 10 135233695 135233695 G T MTG1 3'UTR 0.10 TCGA-39-5016-01 10 28900818 28900818 G A WAC Silent p.L468L 0.40 TCGA-39-5016-01 10 31803581 31803581 T C ZEB1 Silent p.C246C 0.40 TCGA-39-5016-01 10 52834627 52834627 C A PRKG1 Missense_Mutation p.H93N 0.06 tolerated(0.63) benign(0) TCGA-39-5016-01 10 53814260 53814260 G T PRKG1 Missense_Mutation p.G260V 0.26 deleterious(0) probably_damaging(0.962) TCGA-39-5016-01 10 55955514 55955514 C T PCDH15 Missense_Mutation p.A412T 0.20 tolerated(1) benign(0.016) TCGA-39-5016-01 10 61022302 61022302 C G FAM13C Silent p.P376P 0.25 TCGA-39-5016-01 10 78870077 78870077 C - KCNMA1 Frame_Shift_Del p.E329Kfs*60 0.19 TCGA-39-5016-01 10 82191892 82191892 C A FAM213A 3'UTR 0.26 TCGA-39-5016-01 10 87406894 87406894 C A GRID1 Intron 0.26 TCGA-39-5016-01 10 98369517 98369517 C T PIK3AP1 Missense_Mutation p.E708K 0.27 tolerated(0.71) possibly_damaging(0.493) TCGA-39-5016-01 11 111224933 111224933 G C POU2AF1 3'UTR 0.40 TCGA-39-5016-01 11 113266892 113266892 C T ANKK1 Silent p.D262D 0.19 TCGA-39-5016-01 11 114442168 114442168 G A NXPE4 Missense_Mutation p.S376F 0.24 tolerated(0.27) benign(0.01) TCGA-39-5016-01 11 119025563 119025563 T C ABCG4 Silent p.R208R 0.28 TCGA-39-5016-01 11 123810676 123810676 T C OR4D5 Missense_Mutation p.M118T 0.20 deleterious(0) possibly_damaging(0.885) TCGA-39-5016-01 11 123893785 123893785 C A OR10G9 Missense_Mutation p.D22E 0.24 tolerated(1) benign(0.088) TCGA-39-5016-01 11 124761273 124761273 G A ROBO4 Missense_Mutation p.L624F 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-39-5016-01 11 124765457 124765457 C A ROBO4 Missense_Mutation p.G311V 0.30 deleterious(0.04) possibly_damaging(0.468) TCGA-39-5016-01 11 1273591 1273591 A T MUC5B Missense_Mutation p.K4961M 0.22 unknown(0) TCGA-39-5016-01 11 12901181 12901181 G C TEAD1 Intron 0.28 TCGA-39-5016-01 11 133790636 133790636 A T IGSF9B Missense_Mutation p.V995D 0.39 deleterious_low_confidence(0) possibly_damaging(0.869) TCGA-39-5016-01 11 133790808 133790808 C T IGSF9B Missense_Mutation p.E938K 0.40 tolerated_low_confidence(0.06) probably_damaging(0.995) TCGA-39-5016-01 11 134180992 134180992 C A GLB1L3 Silent p.P405P 0.23 TCGA-39-5016-01 11 16812380 16812380 C A PLEKHA7 Missense_Mutation p.G1006V 0.19 deleterious(0.02) possibly_damaging(0.703) TCGA-39-5016-01 11 17424272 17424272 G - ABCC8 Frame_Shift_Del p.Q1196Sfs*12 0.24 TCGA-39-5016-01 11 1774798 1774798 G A CTSD Missense_Mutation p.R392C 0.22 tolerated(0.06) benign(0.014) TCGA-39-5016-01 11 30033008 30033008 G A KCNA4 Silent p.I406I 0.36 TCGA-39-5016-01 11 36680701 36680701 G A C11orf74 Missense_Mutation p.D211N 0.35 tolerated(1) benign(0.003) TCGA-39-5016-01 11 43772487 43772487 G T HSD17B12 Nonsense_Mutation p.G63* 0.16 TCGA-39-5016-01 11 44076801 44076801 G C ACCSL Missense_Mutation p.D367H 0.09 deleterious(0) probably_damaging(0.994) TCGA-39-5016-01 11 45265772 45265772 G A SYT13 Missense_Mutation p.A371V 0.35 tolerated(0.14) probably_damaging(0.988) TCGA-39-5016-01 11 46001392 46001392 C A PHF21A Missense_Mutation p.Q93H 0.19 tolerated_low_confidence(0.07) possibly_damaging(0.547) TCGA-39-5016-01 11 46408056 46408056 G A CHRM4 Silent p.L18L 0.34 TCGA-39-5016-01 11 4825550 4825550 G T OR52R1 Missense_Mutation p.P21T 0.13 deleterious(0) probably_damaging(1) TCGA-39-5016-01 11 4929170 4929170 G A OR51A7 Missense_Mutation p.D191N 0.15 deleterious(0.04) benign(0.246) TCGA-39-5016-01 11 50003423 50003423 G T OR4C12 Nonsense_Mutation p.C205* 0.28 TCGA-39-5016-01 11 5068359 5068359 C A OR52J3 Missense_Mutation p.L202I 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-39-5016-01 11 51411541 51411541 C G OR4A5 Silent p.T285T 0.38 TCGA-39-5016-01 11 5255338 5255338 C A HBD Missense_Mutation p.K66N 0.31 deleterious(0.04) possibly_damaging(0.665) TCGA-39-5016-01 11 5289800 5289800 G T HBE1 Missense_Mutation p.L115M 0.21 tolerated(0.05) benign(0.248) TCGA-39-5016-01 11 5289801 5289801 A G HBE1 Silent p.I114I 0.22 TCGA-39-5016-01 11 55111131 55111131 T A OR4A16 Missense_Mutation p.V152E 0.29 deleterious_low_confidence(0) possibly_damaging(0.77) TCGA-39-5016-01 11 55371078 55371078 G T OR4C11 Missense_Mutation p.R258S 0.15 deleterious(0) benign(0.281) TCGA-39-5016-01 11 55406052 55406052 C A OR4P4 Silent p.S73S 0.21 TCGA-39-5016-01 11 55432749 55432749 C A OR4C6 Missense_Mutation p.T36K 0.37 deleterious_low_confidence(0) possibly_damaging(0.779) TCGA-39-5016-01 11 55563840 55563840 G - OR5D14 Frame_Shift_Del p.Q271Kfs*17 0.17 TCGA-39-5016-01 11 55761812 55761812 C A OR5F1 Missense_Mutation p.C97F 0.29 deleterious(0) probably_damaging(0.999) TCGA-39-5016-01 11 57571193 57571193 T G CTNND1 Silent p.G507G 0.22 TCGA-39-5016-01 11 58189819 58189819 G - OR5B2 Frame_Shift_Del p.Q306Kfs*? 0.20 TCGA-39-5016-01 11 61048362 61048362 C A VWCE Missense_Mutation p.R378L 0.29 tolerated(0.27) benign(0.039) TCGA-39-5016-01 11 62623735 62623735 C T SLC3A2 5'UTR 0.27 TCGA-39-5016-01 11 63065100 63065100 G T SLC22A10 Missense_Mutation p.G244V 0.27 deleterious(0) probably_damaging(0.997) TCGA-39-5016-01 11 65786374 65786374 C A CATSPER1 Splice_Site p.X709_splice 0.34 TCGA-39-5016-01 11 66062539 66062539 C A TMEM151A Silent p.A274A 0.33 TCGA-39-5016-01 11 7059848 7059848 C T NLRP14 Missense_Mutation p.P11S 0.23 tolerated(1) benign(0.096) TCGA-39-5016-01 11 88780992 88780992 G A GRM5 Missense_Mutation p.R17C 0.20 tolerated(0.07) benign(0.13) TCGA-39-5016-01 11 88780993 88780993 G T GRM5 Silent p.V16V 0.20 TCGA-39-5016-01 11 93806216 93806216 G T HEPHL1 Missense_Mutation p.G420W 0.22 deleterious(0) possibly_damaging(0.664) TCGA-39-5016-01 12 107364965 107364965 T A C12orf23 Silent p.A49A 0.23 TCGA-39-5016-01 12 118693393 118693393 C A TAOK3 5'UTR 0.43 TCGA-39-5016-01 12 121441908 121441908 G A C12orf43 3'UTR 0.50 TCGA-39-5016-01 12 124242547 124242547 T A ATP6V0A2 Missense_Mutation p.S847T 0.12 tolerated(0.45) benign(0.062) TCGA-39-5016-01 12 124242548 124242548 C T ATP6V0A2 Missense_Mutation p.S847L 0.14 tolerated(0.37) benign(0.001) TCGA-39-5016-01 12 124395159 124395159 T A DNAH10 Missense_Mutation p.F3240L 0.22 probably_damaging(0.983) TCGA-39-5016-01 12 125497114 125497114 G T BRI3BP Missense_Mutation p.G83V 0.14 deleterious(0) probably_damaging(1) TCGA-39-5016-01 12 133384974 133384974 C - GOLGA3 Frame_Shift_Del p.L228Ffs*46 0.37 TCGA-39-5016-01 12 21028332 21028332 T C SLCO1B3 Silent p.H297H 0.15 TCGA-39-5016-01 12 21331510 21331510 G T SLCO1B1 Missense_Mutation p.G161V 0.15 deleterious(0) possibly_damaging(0.816) TCGA-39-5016-01 12 29469880 29469880 G A FAR2 Silent p.A354A 0.14 TCGA-39-5016-01 12 30867967 30867967 C T CAPRIN2 Missense_Mutation p.R809Q 0.42 deleterious(0.03) benign(0.283) TCGA-39-5016-01 12 41957357 41957357 G T PDZRN4 Missense_Mutation p.G458V 0.14 deleterious(0) probably_damaging(1) TCGA-39-5016-01 12 5021357 5021357 C A KCNA1 Silent p.T271T 0.20 TCGA-39-5016-01 12 53495851 53495851 G T IGFBP6 Missense_Mutation p.R208L 0.12 deleterious(0) probably_damaging(0.976) TCGA-39-5016-01 12 53517934 53517934 C A SOAT2 3'UTR 0.23 TCGA-39-5016-01 12 675285 675285 C T NINJ2 Silent p.K77K 0.17 TCGA-39-5016-01 12 7894077 7894077 G A CLEC4C Nonsense_Mutation p.R59* 0.23 TCGA-39-5016-01 12 7984328 7984328 C T SLC2A14 Silent p.T71T 0.35 TCGA-39-5016-01 13 103440247 103440247 T C KDELC1 Silent p.Q440Q 0.49 TCGA-39-5016-01 13 108518154 108518154 C G FAM155A Missense_Mutation p.C264S 0.46 deleterious(0) probably_damaging(0.99) TCGA-39-5016-01 13 111290756 111290756 G T CARKD Missense_Mutation p.R354L 0.55 tolerated_low_confidence(0.13) benign(0.029) TCGA-39-5016-01 13 19997157 19997157 G C TPTE2 3'UTR 0.45 TCGA-39-5016-01 13 29599084 29599084 C A MTUS2 Silent p.G93G 0.27 TCGA-39-5016-01 13 32653058 32653058 C T FRY Missense_Mutation p.P53L 0.54 deleterious(0.03) benign(0.029) TCGA-39-5016-01 13 58208780 58208780 C T PCDH17 Silent p.H700H 0.62 TCGA-39-5016-01 13 92380825 92380825 C G GPC5 Missense_Mutation p.Q354E 0.39 tolerated(0.15) benign(0.034) TCGA-39-5016-01 14 100344847 100344847 G A EML1 Missense_Mutation p.E156K 0.28 tolerated(0.12) probably_damaging(0.998) TCGA-39-5016-01 14 105410523 105410523 C A AHNAK2 Silent p.A3755A 0.24 TCGA-39-5016-01 14 105412995 105412995 C A AHNAK2 Missense_Mutation p.E2931D 0.28 benign(0.013) TCGA-39-5016-01 14 105860966 105860966 A C PACS2 Missense_Mutation p.H891P 0.26 deleterious(0) probably_damaging(0.999) TCGA-39-5016-01 14 106453074 106453074 C T IGHV1-2 Silent p.V11V 0.30 TCGA-39-5016-01 14 19553647 19553647 G T POTEG Missense_Mutation p.K77N 0.19 deleterious_low_confidence(0.01) benign(0.185) TCGA-39-5016-01 14 20295661 20295661 C T OR4N2 Silent p.T18T 0.18 TCGA-39-5016-01 14 20404461 20404461 G C OR4K1 Silent p.L212L 0.16 TCGA-39-5016-01 14 21250329 21250329 C T RNASE6 3'UTR 0.05 TCGA-39-5016-01 14 21679246 21679246 G T HNRNPC 3'UTR 0.33 TCGA-39-5016-01 14 21876521 21876521 C A CHD8 Missense_Mutation p.A894S 0.27 tolerated(0.08) probably_damaging(0.992) TCGA-39-5016-01 14 21876522 21876522 C A CHD8 Silent p.L893L 0.27 TCGA-39-5016-01 14 21876595 21876595 G A CHD8 Missense_Mutation p.S869F 0.22 deleterious(0) probably_damaging(0.998) TCGA-39-5016-01 14 23900812 23900812 G C MYH7 Missense_Mutation p.N238K 0.22 deleterious(0) probably_damaging(1) TCGA-39-5016-01 14 52478332 52478332 G T NID2 Silent p.R1164R 0.27 TCGA-39-5016-01 14 65237682 65237682 G C SPTB Missense_Mutation p.R1907G 0.23 deleterious(0) probably_damaging(0.998) TCGA-39-5016-01 14 69787472 69787472 G T GALNT16 Silent p.L74L 0.21 TCGA-39-5016-01 14 71572105 71572105 G A PCNX Silent p.Q2083Q 0.25 TCGA-39-5016-01 14 86088821 86088821 C T FLRT2 Silent p.V321V 0.20 TCGA-39-5016-01 14 86088895 86088895 G T FLRT2 Missense_Mutation p.R346L 0.23 deleterious(0) probably_damaging(0.984) TCGA-39-5016-01 14 86089605 86089605 C T FLRT2 Missense_Mutation p.R583W 0.24 deleterious(0) probably_damaging(0.996) TCGA-39-5016-01 14 92347671 92347671 G C FBLN5 Missense_Mutation p.I318M 0.22 tolerated(0.1) benign(0.049) TCGA-39-5016-01 14 93301991 93301991 G T GOLGA5 Missense_Mutation p.S678I 0.30 deleterious(0) probably_damaging(0.973) TCGA-39-5016-01 14 94391528 94391528 C A FAM181A 5'UTR 0.50 TCGA-39-5016-01 15 20645749 20645749 G T HERC2P3 RNA 0.16 TCGA-39-5016-01 15 22383440 22383440 C A OR4N4 3'UTR 0.19 TCGA-39-5016-01 15 23932302 23932302 C A NDN Missense_Mutation p.E21D 0.39 tolerated_low_confidence(0.16) benign(0.092) TCGA-39-5016-01 15 25326477 25326477 A T SNORD116-15 RNA 0.17 TCGA-39-5016-01 15 25335120 25335120 G T SNHG14 Intron 0.15 TCGA-39-5016-01 15 25463658 25463658 G C SNORD115-27 5'Flank 0.17 TCGA-39-5016-01 15 26866506 26866506 C A GABRB3 Missense_Mutation p.R139L 0.17 deleterious(0) probably_damaging(0.91) TCGA-39-5016-01 15 33927921 33927921 G A RYR3 Silent p.V1094V 0.19 TCGA-39-5016-01 15 34376672 34376672 T C EMC7 Missense_Mutation p.M198V 0.28 deleterious(0.02) probably_damaging(0.98) TCGA-39-5016-01 15 35814421 35814421 T G DPH6 Intron 0.20 TCGA-39-5016-01 15 40504848 40504848 A C BUB1B Missense_Mutation p.Q845P 0.25 tolerated(0.33) possibly_damaging(0.74) TCGA-39-5016-01 15 40660491 40660491 C T DISP2 Silent p.R726R 0.32 TCGA-39-5016-01 15 41857275 41857275 A T TYRO3 Missense_Mutation p.N240I 0.28 deleterious(0.02) probably_damaging(0.993) TCGA-39-5016-01 15 42028655 42028655 C T MGA Missense_Mutation p.S1398F 0.27 deleterious(0) probably_damaging(0.999) TCGA-39-5016-01 15 69113052 69113052 G T ANP32A Missense_Mutation p.N13K 0.18 tolerated(0.08) benign(0.375) TCGA-39-5016-01 15 69320732 69320732 G T NOX5 Intron 0.25 TCGA-39-5016-01 15 69709736 69709736 G A KIF23 Silent p.V32V 0.27 TCGA-39-5016-01 15 73562757 73562757 C T NEO1 Missense_Mutation p.T940I 0.37 deleterious(0.01) probably_damaging(1) TCGA-39-5016-01 15 75586721 75586721 G A GOLGA6D Missense_Mutation p.E663K 0.24 deleterious(0.04) benign(0.056) TCGA-39-5016-01 15 78210812 78210812 C T RP11-114H24.7 Intron 0.23 TCGA-39-5016-01 15 91769672 91769672 A G SV2B Missense_Mutation p.K60R 0.26 deleterious(0.03) benign(0.033) TCGA-39-5016-01 16 15716946 15716946 G A KIAA0430 Missense_Mutation p.P769S 0.26 deleterious(0.04) probably_damaging(0.999) TCGA-39-5016-01 16 19722719 19722719 T A KNOP1 Missense_Mutation p.N321I 0.10 deleterious(0) probably_damaging(0.948) TCGA-39-5016-01 16 21278978 21278978 C T CRYM Silent p.S190S 0.14 TCGA-39-5016-01 16 23383105 23383105 T C SCNN1B Silent p.L351L 0.41 TCGA-39-5016-01 16 2579538 2579538 T C AMDHD2 Intron 0.08 TCGA-39-5016-01 16 28124345 28124345 C T XPO6 Silent p.A677A 0.08 TCGA-39-5016-01 16 30004865 30004865 T G HIRIP3 Silent p.L474L 0.20 TCGA-39-5016-01 16 30387949 30387949 C T MYLPF Missense_Mutation p.P96S 0.49 deleterious(0.04) benign(0.128) TCGA-39-5016-01 16 30722077 30722077 A T SRCAP Silent p.I379I 0.07 TCGA-39-5016-01 16 30722079 30722079 A C SRCAP Missense_Mutation p.K380T 0.08 unknown(0) TCGA-39-5016-01 16 31123353 31123353 G C BCKDK Intron 0.17 TCGA-39-5016-01 16 31439087 31439087 C T COX6A2 3'UTR 0.36 TCGA-39-5016-01 16 335627 335627 C A PDIA2 Missense_Mutation p.A348E 0.09 tolerated(0.19) possibly_damaging(0.564) TCGA-39-5016-01 16 4847411 4847411 G C ROGDI 3'UTR 0.36 TCGA-39-5016-01 16 58072217 58072217 G T MMP15 Missense_Mutation p.R120L 0.53 tolerated(0.09) benign(0.019) TCGA-39-5016-01 16 69788568 69788568 G A NOB1 Missense_Mutation p.T42I 0.46 deleterious(0.01) probably_damaging(0.963) TCGA-39-5016-01 16 71101194 71101194 T A HYDIN Missense_Mutation p.R692W 0.56 probably_damaging(0.988) TCGA-39-5016-01 16 71423865 71423865 C A CALB2 3'UTR 0.67 TCGA-39-5016-01 16 735761 735761 G A WDR24 Silent p.S532S 0.07 TCGA-39-5016-01 16 74443466 74443466 G T CLEC18B Missense_Mutation p.R438S 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-39-5016-01 16 88904108 88904108 G A GALNS Missense_Mutation p.P163L 0.52 deleterious(0) probably_damaging(0.989) TCGA-39-5016-01 17 11642264 11642264 G T DNAH9 Missense_Mutation p.S1961I 0.51 possibly_damaging(0.739) TCGA-39-5016-01 17 15952254 15952254 G T NCOR1 Nonsense_Mutation p.Y2147* 0.19 TCGA-39-5016-01 17 18694245 18694245 A T TVP23B Silent p.R44R 0.53 TCGA-39-5016-01 17 21318640 21318640 C T KCNJ12 5'UTR 0.23 TCGA-39-5016-01 17 26881995 26881995 C T PIGS Silent p.E422E 0.26 TCGA-39-5016-01 17 32961865 32961865 G A TMEM132E Missense_Mutation p.R489Q 0.22 tolerated(0.37) possibly_damaging(0.495) TCGA-39-5016-01 17 40845547 40845547 C A CNTNAP1 Nonsense_Mutation p.C995* 0.14 TCGA-39-5016-01 17 48267439 48267439 C T COL1A1 Missense_Mutation p.E828K 0.14 unknown(0) TCGA-39-5016-01 17 57288727 57288727 C T SMG8 Missense_Mutation p.H439Y 0.26 tolerated(0.25) probably_damaging(0.943) TCGA-39-5016-01 17 66873754 66873754 C T ABCA8 Missense_Mutation p.A1329T 0.16 tolerated(0.72) benign(0.06) TCGA-39-5016-01 17 71427679 71427679 C G SDK2 Missense_Mutation p.R481P 0.09 tolerated(0.05) probably_damaging(0.974) TCGA-39-5016-01 17 72914094 72914094 G C USH1G 3'UTR 0.37 TCGA-39-5016-01 17 74004655 74004655 T C EVPL Missense_Mutation p.N1544S 0.19 tolerated(1) benign(0.002) TCGA-39-5016-01 17 7578407 7578407 G C TP53 Missense_Mutation p.R175G 0.48 deleterious(0) probably_damaging(0.985) TCGA-39-5016-01 17 77758407 77758407 G T CBX2 Missense_Mutation p.G389W 0.22 deleterious(0.03) probably_damaging(1) TCGA-39-5016-01 17 8045139 8045139 C A PER1 Missense_Mutation p.R1195L 0.52 deleterious(0.04) benign(0.262) TCGA-39-5016-01 17 80477930 80477930 A T FOXK2 Missense_Mutation p.I56F 0.38 deleterious(0) probably_damaging(0.959) TCGA-39-5016-01 18 12277260 12277260 G T CIDEA Silent p.T217T 0.29 TCGA-39-5016-01 18 14542826 14542826 G C POTEC Missense_Mutation p.P107R 0.22 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-39-5016-01 18 29496235 29496235 C T TRAPPC8 Missense_Mutation p.R206K 0.48 tolerated(0.49) benign(0.028) TCGA-39-5016-01 18 31326458 31326458 C A ASXL3 Silent p.R2216R 0.42 TCGA-39-5016-01 18 31463262 31463262 T A NOL4 Missense_Mutation p.S557C 0.47 deleterious(0) possibly_damaging(0.669) TCGA-39-5016-01 18 61570219 61570219 C G SERPINB2 Missense_Mutation p.P310A 0.24 deleterious(0) probably_damaging(1) TCGA-39-5016-01 18 71816224 71816224 A T TIMM21 Missense_Mutation p.T61S 0.07 tolerated(0.2) benign(0.004) TCGA-39-5016-01 18 77221349 77221349 C A NFATC1 Silent p.R635R 0.10 TCGA-39-5016-01 18 77221350 77221350 G T NFATC1 Missense_Mutation p.R635L 0.10 deleterious(0.01) possibly_damaging(0.73) TCGA-39-5016-01 19 10131415 10131415 C T RDH8 Missense_Mutation p.S178F 0.11 deleterious(0) probably_damaging(0.998) TCGA-39-5016-01 19 10782046 10782046 G A ILF3 Silent p.T82T 0.30 TCGA-39-5016-01 19 12805660 12805660 G C FBXW9 Missense_Mutation p.L168V 0.31 deleterious(0.02) possibly_damaging(0.907) TCGA-39-5016-01 19 17487871 17487871 C T PLVAP Missense_Mutation p.G76E 0.14 tolerated(0.99) benign(0.075) TCGA-39-5016-01 19 17875189 17875189 C A FCHO1 Missense_Mutation p.T42N 0.26 tolerated(0.42) benign(0.008) TCGA-39-5016-01 19 18778613 18778613 G T KLHL26 Missense_Mutation p.V136L 0.37 deleterious(0.02) probably_damaging(0.952) TCGA-39-5016-01 19 21607912 21607912 A T ZNF493 3'UTR 0.23 TCGA-39-5016-01 19 23329118 23329118 C T ZNF730 Silent p.Y424Y 0.30 TCGA-39-5016-01 19 3053947 3053947 G C AES Missense_Mutation p.P222R 0.35 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-39-5016-01 19 36002311 36002311 A T DMKN Splice_Site p.X306_splice 0.23 TCGA-39-5016-01 19 3734422 3734422 C A TJP3 Silent p.T334T 0.20 TCGA-39-5016-01 19 38102578 38102578 G A ZNF540 Missense_Mutation p.G133R 0.13 tolerated(0.58) benign(0.126) TCGA-39-5016-01 19 38103723 38103723 G C ZNF540 Missense_Mutation p.Q514H 0.15 tolerated(0.11) benign(0.064) TCGA-39-5016-01 19 39881547 39881547 C A PAF1 5'UTR 0.25 TCGA-39-5016-01 19 42260847 42260847 C A CEACAM6 Missense_Mutation p.T135N 0.29 deleterious(0.01) possibly_damaging(0.856) TCGA-39-5016-01 19 44933308 44933308 C G ZNF229 Missense_Mutation p.G550R 0.21 deleterious(0.03) benign(0.31) TCGA-39-5016-01 19 4685731 4685731 C T DPP9 Silent p.S646S 0.17 TCGA-39-5016-01 19 49636538 49636538 C T PPFIA3 Silent p.A357A 0.20 TCGA-39-5016-01 19 53885628 53885628 G A ZNF525 3'UTR 0.50 TCGA-39-5016-01 19 53945555 53945555 G T TPM3P9 RNA 0.44 TCGA-39-5016-01 19 55221479 55221479 G A AC098784.2 3'Flank 0.59 TCGA-39-5016-01 19 56180887 56180887 G C U2AF2 Silent p.P374P 0.55 TCGA-39-5016-01 19 56539242 56539242 G A NLRP5 Missense_Mutation p.G548D 0.60 tolerated(0.94) benign(0.007) TCGA-39-5016-01 19 6479048 6479048 C G DENND1C Missense_Mutation p.V66L 0.26 tolerated(0.09) possibly_damaging(0.851) TCGA-39-5016-01 19 9492293 9492293 G A ZNF177 Missense_Mutation p.C429Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-39-5016-01 1 101383663 101383663 C A SLC30A7 Missense_Mutation p.P229H 0.47 tolerated(0.1) possibly_damaging(0.764) TCGA-39-5016-01 1 103468777 103468777 C - COL11A1 Frame_Shift_Del p.Q665Sfs*7 0.40 TCGA-39-5016-01 1 115323065 115323065 C A SIKE1 Missense_Mutation p.R55M 0.44 deleterious(0.05) benign(0.123) TCGA-39-5016-01 1 119575589 119575589 T C WARS2 Missense_Mutation p.K343R 0.50 tolerated(1) benign(0.001) TCGA-39-5016-01 1 158651325 158651325 C A SPTA1 Nonsense_Mutation p.G175* 0.66 TCGA-39-5016-01 1 159175318 159175318 A G DARC Missense_Mutation p.Y32C 0.67 deleterious(0.03) possibly_damaging(0.891) TCGA-39-5016-01 1 159897217 159897217 C T IGSF9 Missense_Mutation p.R1153H 0.18 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-39-5016-01 1 165376129 165376129 A G RXRG Silent p.S388S 0.64 TCGA-39-5016-01 1 165386326 165386326 G A RXRG Nonsense_Mutation p.Q192* 0.34 TCGA-39-5016-01 1 173931198 173931198 G A RC3H1 Missense_Mutation p.R623C 0.14 deleterious(0.02) possibly_damaging(0.794) TCGA-39-5016-01 1 177225101 177225101 G C BRINP2 Missense_Mutation p.D106H 0.17 deleterious(0) probably_damaging(0.969) TCGA-39-5016-01 1 186034406 186034406 G T HMCN1 Missense_Mutation p.G2517V 0.60 probably_damaging(1) TCGA-39-5016-01 1 186919850 186919850 C G PLA2G4A Missense_Mutation p.H442Q 0.11 tolerated(0.94) benign(0.001) TCGA-39-5016-01 1 20141183 20141183 C A RNF186 Nonsense_Mutation p.G138* 0.57 TCGA-39-5016-01 1 2077516 2077516 C T PRKCZ Silent p.D201D 0.16 TCGA-39-5016-01 1 208219238 208219238 C T PLXNA2 Silent p.S1160S 0.15 TCGA-39-5016-01 1 216500970 216500970 G A USH2A Nonsense_Mutation p.Q271* 0.66 TCGA-39-5016-01 1 229567639 229567639 C A ACTA1 Silent p.S273S 0.29 TCGA-39-5016-01 1 244218625 244218625 G A ZBTB18 Missense_Mutation p.V517I 0.12 tolerated_low_confidence(0.05) probably_damaging(0.912) TCGA-39-5016-01 1 27226883 27226883 C T GPATCH3 Silent p.V17V 0.54 TCGA-39-5016-01 1 66087122 66087122 T A LEPR Missense_Mutation p.L860I 0.47 tolerated(0.05) possibly_damaging(0.677) TCGA-39-5016-01 1 89448597 89448597 C A RBMXL1 Missense_Mutation p.G305C 0.51 deleterious(0.03) probably_damaging(1) TCGA-39-5016-01 20 17930812 17930812 T C SNX5 Missense_Mutation p.H252R 0.37 tolerated(0.39) benign(0.049) TCGA-39-5016-01 20 23666577 23666577 C A CST4 Missense_Mutation p.W127L 0.39 deleterious(0) probably_damaging(0.991) TCGA-39-5016-01 20 23967233 23967233 A C GGTLC1 Missense_Mutation p.F6V 0.16 deleterious(0.04) possibly_damaging(0.517) TCGA-39-5016-01 20 25284237 25284237 G T ABHD12 Silent p.L326L 0.29 TCGA-39-5016-01 20 2560663 2560663 C A TMC2 Silent p.V265V 0.24 TCGA-39-5016-01 20 29623192 29623192 A T FRG1B Missense_Mutation p.R2W 0.02 deleterious_low_confidence(0.03) benign(0.167) TCGA-39-5016-01 20 30898384 30898384 C A KIF3B Silent p.I268I 0.12 TCGA-39-5016-01 20 37464809 37464809 G A PPP1R16B Missense_Mutation p.A81T 0.15 tolerated(0.06) benign(0.007) TCGA-39-5016-01 20 42161437 42161437 G A L3MBTL1 Missense_Mutation p.V415M 0.37 deleterious(0.02) benign(0.28) TCGA-39-5016-01 20 44596719 44596719 C A ZNF335 Intron 0.10 TCGA-39-5016-01 20 4705266 4705266 G T PRND Silent p.A23A 0.33 TCGA-39-5016-01 20 48522387 48522387 C T SPATA2 Silent p.P444P 0.18 TCGA-39-5016-01 20 50245527 50245527 C T ATP9A Missense_Mutation p.E585K 0.15 deleterious(0.03) benign(0.178) TCGA-39-5016-01 20 60967462 60967462 C T CABLES2 Silent p.T358T 0.19 TCGA-39-5016-01 20 60967492 60967492 G A CABLES2 Silent p.F348F 0.19 TCGA-39-5016-01 20 60987708 60987708 C T RBBP8NL Silent p.R616R 0.21 TCGA-39-5016-01 20 62196189 62196189 C A HELZ2 Missense_Mutation p.R1329L 0.24 tolerated(0.54) benign(0.012) TCGA-39-5016-01 20 62384099 62384130 GTAGGGCCGCTCTCCCGTGTGCGAGCGCATGT - ZBTB46 Frame_Shift_Del p.H436Pfs*93 0.22 TCGA-39-5016-01 21 10921956 10921956 G T TPTE Missense_Mutation p.S356Y 0.08 deleterious(0) possibly_damaging(0.765) TCGA-39-5016-01 21 11038937 11038937 T C BAGE2 RNA 0.04 TCGA-39-5016-01 21 11098778 11098778 C A BAGE2 RNA 0.13 TCGA-39-5016-01 21 33368230 33368230 G T HUNK Silent p.R485R 0.21 TCGA-39-5016-01 21 45999822 45999822 T C KRTAP10-5 Missense_Mutation p.T212A 0.04 tolerated(0.16) benign(0.444) TCGA-39-5016-01 22 31924828 31924828 G - SFI1 Frame_Shift_Del p.L83* 0.25 TCGA-39-5016-01 22 33960856 33960856 C A LARGE Missense_Mutation p.W255C 0.54 deleterious(0) probably_damaging(0.926) TCGA-39-5016-01 22 39996588 39996588 G A CACNA1I Missense_Mutation p.G138R 0.40 deleterious(0) probably_damaging(1) TCGA-39-5016-01 22 50564637 50564637 A T MOV10L1 Missense_Mutation p.K585I 0.23 tolerated(0.06) possibly_damaging(0.806) TCGA-39-5016-01 2 11809674 11809674 G T NTSR2 Nonsense_Mutation p.C194* 0.29 TCGA-39-5016-01 2 11809675 11809675 C T NTSR2 Missense_Mutation p.C194Y 0.29 deleterious(0) probably_damaging(0.964) TCGA-39-5016-01 2 120252024 120252024 C A SCTR Missense_Mutation p.G58V 0.42 tolerated(0.13) benign(0.051) TCGA-39-5016-01 2 125504803 125504803 C T CNTNAP5 Intron 0.41 TCGA-39-5016-01 2 145157027 145157027 T C ZEB2 Missense_Mutation p.N576S 0.46 tolerated(0.31) benign(0.01) TCGA-39-5016-01 2 158980362 158980362 G T UPP2 Nonsense_Mutation p.E313* 0.17 TCGA-39-5016-01 2 163072485 163072485 C A FAP Silent p.R263R 0.37 TCGA-39-5016-01 2 163361029 163361029 G T KCNH7 Missense_Mutation p.P351H 0.36 deleterious(0) probably_damaging(0.94) TCGA-39-5016-01 2 164467420 164467420 G C FIGN Missense_Mutation p.L308V 0.34 tolerated(0.15) benign(0.004) TCGA-39-5016-01 2 166866283 166866283 C T SCN1A Silent p.R1316R 0.20 TCGA-39-5016-01 2 16740772 16740772 G A FAM49A Missense_Mutation p.H265Y 0.35 deleterious(0.04) possibly_damaging(0.558) TCGA-39-5016-01 2 168104241 168104241 C A XIRP2 Silent p.S2113S 0.22 TCGA-39-5016-01 2 168114773 168114773 C A XIRP2 3'UTR 0.44 TCGA-39-5016-01 2 170387128 170387128 T C FASTKD1 Missense_Mutation p.H804R 0.40 deleterious(0) possibly_damaging(0.876) TCGA-39-5016-01 2 172195693 172195693 C G METTL8 Splice_Site p.X202_splice 0.19 TCGA-39-5016-01 2 175962228 175962228 C G ATF2 Missense_Mutation p.E308Q 0.14 tolerated(0.11) benign(0.015) TCGA-39-5016-01 2 179447023 179447023 C T TTN Missense_Mutation p.D22054N 0.16 TCGA-39-5016-01 2 179464030 179464030 C T TTN Silent p.K18830K 0.15 TCGA-39-5016-01 2 179476369 179476369 C T TTN Missense_Mutation p.D16863N 0.14 TCGA-39-5016-01 2 179477512 179477512 G A TTN Missense_Mutation p.R16646W 0.21 TCGA-39-5016-01 2 179501173 179501173 G A TTN Missense_Mutation p.R13761C 0.12 TCGA-39-5016-01 2 179611819 179611819 A T TTN Intron 0.16 TCGA-39-5016-01 2 179669357 179669357 C - TTN Frame_Shift_Del p.A5Hfs*33 0.36 TCGA-39-5016-01 2 179718318 179718318 C T CCDC141 Missense_Mutation p.V1032I 0.10 tolerated(0.31) benign(0.149) TCGA-39-5016-01 2 186672748 186672748 C A FSIP2 Missense_Mutation p.P6328T 0.49 possibly_damaging(0.753) TCGA-39-5016-01 2 196729651 196729651 T A DNAH7 Missense_Mutation p.E2243V 0.12 tolerated(0.25) benign(0.005) TCGA-39-5016-01 2 200233368 200233368 C G SATB2 Missense_Mutation p.Q220H 0.06 tolerated(0.19) benign(0.062) TCGA-39-5016-01 2 203141184 203141184 G A NOP58 Intron 0.10 TCGA-39-5016-01 2 20403985 20403985 C T SDC1 Silent p.T72T 0.17 TCGA-39-5016-01 2 207173228 207173228 G A ZDBF2 Missense_Mutation p.D1326N 0.54 tolerated(0.42) benign(0) TCGA-39-5016-01 2 210560172 210560172 G T MAP2 Missense_Mutation p.G1093V 0.51 tolerated_low_confidence(0.06) benign(0.031) TCGA-39-5016-01 2 211438084 211438084 T G CPS1 Missense_Mutation p.H69Q 0.11 tolerated(0.14) benign(0.43) TCGA-39-5016-01 2 212248560 212248560 G T ERBB4 Missense_Mutation p.A1236E 0.17 deleterious(0.01) benign(0.406) TCGA-39-5016-01 2 21226033 21226033 C A APOB Missense_Mutation p.K4087N 0.34 probably_damaging(0.914) TCGA-39-5016-01 2 215875075 215875075 T C ABCA12 Missense_Mutation p.T818A 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-39-5016-01 2 218679638 218679638 G T TNS1 Missense_Mutation p.Q1472K 0.54 deleterious(0) probably_damaging(0.992) TCGA-39-5016-01 2 219694732 219694732 G T PRKAG3 Missense_Mutation p.S201Y 0.14 tolerated(0.07) probably_damaging(0.992) TCGA-39-5016-01 2 219735919 219735919 G T WNT6 Missense_Mutation p.R84L 0.15 deleterious(0) probably_damaging(0.955) TCGA-39-5016-01 2 225346609 225346609 C A CUL3 Missense_Mutation p.V677F 0.41 deleterious(0) probably_damaging(0.913) TCGA-39-5016-01 2 226273811 226273818 TAAAGCGG - NYAP2 Splice_Site p.X73_splice 0.37 TCGA-39-5016-01 2 228162414 228162414 C A COL4A3 Missense_Mutation p.P1197Q 0.52 unknown(0) TCGA-39-5016-01 2 228884363 228884363 C A SPHKAP Missense_Mutation p.A403S 0.11 deleterious(0) probably_damaging(0.994) TCGA-39-5016-01 2 230910733 230910733 A G SLC16A14 Missense_Mutation p.L370P 0.11 deleterious(0) probably_damaging(1) TCGA-39-5016-01 2 234869590 234869590 C T TRPM8 Silent p.I511I 0.13 TCGA-39-5016-01 2 29136540 29136540 G T WDR43 Intron 0.24 TCGA-39-5016-01 2 36986128 36986128 G A VIT Silent p.K142K 0.32 TCGA-39-5016-01 2 37458732 37458732 T C CEBPZ 5'UTR 0.07 TCGA-39-5016-01 2 38570414 38570414 T C ATL2 Missense_Mutation p.N120S 0.39 tolerated(0.5) benign(0.004) TCGA-39-5016-01 2 45774673 45774674 AA - SRBD1 Frame_Shift_Del p.L585Afs*25 0.14 TCGA-39-5016-01 2 54135695 54135695 T C PSME4 Missense_Mutation p.I879M 0.31 tolerated(0.34) benign(0.025) TCGA-39-5016-01 2 56419918 56419918 C T CCDC85A Nonsense_Mutation p.Q195* 0.31 TCGA-39-5016-01 2 7003614 7003614 G A CMPK2 Silent p.I257I 0.36 TCGA-39-5016-01 2 70906069 70906069 G C ADD2 Missense_Mutation p.R384G 0.11 deleterious(0) probably_damaging(0.998) TCGA-39-5016-01 2 71012601 71012601 A G FIGLA Silent p.A185A 0.31 TCGA-39-5016-01 2 80529580 80529580 G T LRRTM1 Silent p.A455A 0.29 TCGA-39-5016-01 2 89156980 89156980 G T IGKC Missense_Mutation p.T73K 0.41 deleterious(0) probably_damaging(0.916) TCGA-39-5016-01 2 89197070 89197070 G T IGKV5-2 Missense_Mutation p.V39F 0.37 deleterious(0) probably_damaging(0.941) TCGA-39-5016-01 2 90139400 90139400 G T IGKV1D-16 Missense_Mutation p.W57C 0.15 deleterious(0.01) possibly_damaging(0.905) TCGA-39-5016-01 2 98422075 98422075 C G TMEM131 Missense_Mutation p.R716P 0.25 deleterious(0) probably_damaging(0.999) TCGA-39-5016-01 2 99797383 99797383 C A MITD1 Missense_Mutation p.R21L 0.19 deleterious(0) probably_damaging(0.973) TCGA-39-5016-01 3 113775361 113775361 T C KIAA1407 5'UTR 0.42 TCGA-39-5016-01 3 119426380 119426380 C G MAATS1 Missense_Mutation p.H111D 0.14 tolerated(0.07) benign(0.015) TCGA-39-5016-01 3 121351918 121351918 G A HCLS1 Missense_Mutation p.P335L 0.39 tolerated(0.39) possibly_damaging(0.726) TCGA-39-5016-01 3 121976229 121976229 C T CASR Missense_Mutation p.P163S 0.43 deleterious(0) probably_damaging(0.964) TCGA-39-5016-01 3 124356067 124356067 C A KALRN Missense_Mutation p.L163I 0.23 tolerated(0.08) benign(0.243) TCGA-39-5016-01 3 126062461 126062461 C A KLF15 3'UTR 0.42 TCGA-39-5016-01 3 130293249 130293249 C A COL6A6 Missense_Mutation p.Q1143K 0.40 tolerated(0.33) probably_damaging(0.994) TCGA-39-5016-01 3 130293250 130293250 A G COL6A6 Missense_Mutation p.Q1143R 0.39 tolerated(0.22) probably_damaging(0.996) TCGA-39-5016-01 3 133099870 133099870 T C TMEM108 Missense_Mutation p.W439R 0.11 tolerated(0.07) benign(0.281) TCGA-39-5016-01 3 142037719 142037719 T C XRN1 Silent p.L1476L 0.10 TCGA-39-5016-01 3 148895720 148895720 G A CP Silent p.H975H 0.10 TCGA-39-5016-01 3 156763593 156763593 G T LEKR1 3'UTR 0.16 TCGA-39-5016-01 3 160474330 160474330 C G PPM1L Silent p.L78L 0.14 TCGA-39-5016-01 3 168819910 168819910 C A MECOM Missense_Mutation p.R780S 0.63 tolerated(0.07) possibly_damaging(0.69) TCGA-39-5016-01 3 169482820 169482820 A T ACTRT3 3'Flank 0.11 TCGA-39-5016-01 3 173999027 173999027 A G NLGN1 Silent p.G802G 0.23 TCGA-39-5016-01 3 180332791 180332791 G T CCDC39 Missense_Mutation p.S915Y 0.62 tolerated(0.13) unknown(0) TCGA-39-5016-01 3 194080711 194080711 C T LRRC15 Silent p.Q360Q 0.82 TCGA-39-5016-01 3 195599179 195599179 G A TNK2 Silent p.R536R 0.42 TCGA-39-5016-01 3 46871929 46871929 C T PRSS42 Missense_Mutation p.G283R 0.47 deleterious(0) probably_damaging(1) TCGA-39-5016-01 3 48628960 48628960 G A COL7A1 Nonsense_Mutation p.R525* 0.56 TCGA-39-5016-01 3 49689698 49689698 G T BSN Silent p.T903T 0.52 TCGA-39-5016-01 3 50311390 50311390 G A SEMA3B Intron 0.69 TCGA-39-5016-01 3 64133035 64133035 G A PRICKLE2 Silent p.D377D 0.56 TCGA-39-5016-01 3 69097222 69097222 T A TMF1 Missense_Mutation p.N212Y 0.52 deleterious_low_confidence(0.01) benign(0.025) TCGA-39-5016-01 3 9490205 9490205 C T SETD5 Missense_Mutation p.P746L 0.49 deleterious(0) probably_damaging(0.999) TCGA-39-5016-01 4 109767295 109767295 C T COL25A1 Silent p.P505P 0.21 TCGA-39-5016-01 4 110223212 110223212 C A COL25A1 5'UTR 0.12 TCGA-39-5016-01 4 126336607 126336607 T C FAT4 Silent p.I2163I 0.33 TCGA-39-5016-01 4 126370860 126370860 A G FAT4 Missense_Mutation p.T2897A 0.36 benign(0.091) TCGA-39-5016-01 4 151765280 151765280 C T LRBA Missense_Mutation p.R1514Q 0.03 deleterious(0) possibly_damaging(0.529) TCGA-39-5016-01 4 155457897 155457897 C G PLRG1 Splice_Site p.X496_splice 0.41 TCGA-39-5016-01 4 17625255 17625255 G A MED28 Missense_Mutation p.R124Q 0.17 deleterious(0.03) possibly_damaging(0.509) TCGA-39-5016-01 4 177116777 177116777 G C SPATA4 5'UTR 0.19 TCGA-39-5016-01 4 177136798 177136798 G C ASB5 Missense_Mutation p.Q315E 0.18 tolerated(0.63) possibly_damaging(0.497) TCGA-39-5016-01 4 2230762 2230762 T C HAUS3 3'UTR 0.52 TCGA-39-5016-01 4 37591946 37591946 G T C4orf19 Missense_Mutation p.G90V 0.37 tolerated(0.2) benign(0.084) TCGA-39-5016-01 4 46736987 46736987 G T COX7B2 Missense_Mutation p.P75T 0.10 deleterious(0.01) probably_damaging(0.982) TCGA-39-5016-01 4 48584548 48584548 G T FRYL Missense_Mutation p.A651E 0.32 deleterious(0) benign(0.035) TCGA-39-5016-01 4 70346381 70346381 T C UGT2B4 Missense_Mutation p.R520G 0.17 deleterious(0.03) benign(0.013) TCGA-39-5016-01 4 70346383 70346383 A G UGT2B4 Missense_Mutation p.V519A 0.17 tolerated(1) benign(0.004) TCGA-39-5016-01 4 70512823 70512823 T C UGT2A1 Silent p.E180E 0.29 TCGA-39-5016-01 4 71250254 71250254 C A SMR3B Silent p.G9G 0.37 TCGA-39-5016-01 4 74863950 74863950 C A CXCL5 Missense_Mutation p.G72V 0.36 deleterious(0) probably_damaging(1) TCGA-39-5016-01 4 96075765 96075765 G A BMPR1B Missense_Mutation p.A514T 0.20 deleterious(0.01) probably_damaging(1) TCGA-39-5016-01 5 100147477 100147477 T - ST8SIA4 3'UTR 0.35 TCGA-39-5016-01 5 109181686 109181686 G T MAN2A1 Missense_Mutation p.G941W 0.47 deleterious(0) probably_damaging(1) TCGA-39-5016-01 5 1244359 1244359 C G SLC6A18 Missense_Mutation p.A456G 0.44 tolerated(0.74) benign(0.12) TCGA-39-5016-01 5 131953808 131953808 C T RAD50 Missense_Mutation p.H1071Y 0.57 deleterious(0.05) benign(0.089) TCGA-39-5016-01 5 140167658 140167658 C T PCDHA1 Missense_Mutation p.R595C 0.46 deleterious_low_confidence(0.01) probably_damaging(0.931) TCGA-39-5016-01 5 140516576 140516576 C T PCDHB5 Silent p.Y520Y 0.27 TCGA-39-5016-01 5 140745458 140745458 G T PCDHGA5 Missense_Mutation p.D521Y 0.53 deleterious_low_confidence(0) probably_damaging(1) TCGA-39-5016-01 5 140811929 140811929 C T PCDHGA12 Missense_Mutation p.R535W 0.50 tolerated_low_confidence(0.07) benign(0.106) TCGA-39-5016-01 5 15936904 15936904 G T FBXL7 Missense_Mutation p.R362L 0.38 tolerated(0.11) probably_damaging(0.993) TCGA-39-5016-01 5 170139878 170139878 C A KCNIP1 Missense_Mutation p.Q28K 0.55 tolerated(1) benign(0.001) TCGA-39-5016-01 5 170883856 170883856 C G FGF18 3'UTR 0.50 TCGA-39-5016-01 5 172752872 172752872 T C STC2 Missense_Mutation p.Q98R 0.52 deleterious(0.01) probably_damaging(1) TCGA-39-5016-01 5 19571730 19571730 G C CDH18 Missense_Mutation p.T404R 0.34 tolerated(0.39) possibly_damaging(0.625) TCGA-39-5016-01 5 23527037 23527037 G T PRDM9 Missense_Mutation p.G614W 0.13 deleterious(0) probably_damaging(1) TCGA-39-5016-01 5 24535933 24535933 T C CDH10 Splice_Site p.X176_splice 0.35 TCGA-39-5016-01 5 24593660 24593660 G A CDH10 5'UTR 0.25 TCGA-39-5016-01 5 31538493 31538493 A G C5orf22 Silent p.Q168Q 0.29 TCGA-39-5016-01 5 74892912 74892912 G T POLK Silent p.V798V 0.50 TCGA-39-5016-01 6 116289834 116289834 G A FRK Nonsense_Mutation p.R179* 0.23 TCGA-39-5016-01 6 12123174 12123174 G T HIVEP1 Missense_Mutation p.G1049V 0.23 deleterious(0.04) possibly_damaging(0.616) TCGA-39-5016-01 6 127797137 127797137 G T SOGA3 Missense_Mutation p.N678K 0.25 deleterious(0.04) probably_damaging(0.98) TCGA-39-5016-01 6 129807696 129807696 T A LAMA2 Silent p.I2609I 0.32 TCGA-39-5016-01 6 132031326 132031326 C T CTAGE9 Missense_Mutation p.D278N 0.25 deleterious(0.05) benign(0.315) TCGA-39-5016-01 6 137323265 137323265 C T IL20RA Silent p.S364S 0.29 TCGA-39-5016-01 6 13977368 13977368 T G RNF182 Silent p.P6P 0.23 TCGA-39-5016-01 6 149997825 149997826 - C LATS1 Frame_Shift_Ins p.D881Gfs*40 0.30 TCGA-39-5016-01 6 152477192 152477192 G - SYNE1 Frame_Shift_Del p.A7944Dfs*49 0.18 TCGA-39-5016-01 6 159653564 159653564 C G FNDC1 Missense_Mutation p.R674G 0.37 deleterious_low_confidence(0) unknown(0) TCGA-39-5016-01 6 160555075 160555075 G T SLC22A1 Missense_Mutation p.G253W 0.20 deleterious(0.01) possibly_damaging(0.833) TCGA-39-5016-01 6 29797253 29797253 G T HLA-G Missense_Mutation p.R226S 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-39-5016-01 6 31110877 31110877 T C CCHCR1 Missense_Mutation p.Y785C 0.20 deleterious(0) possibly_damaging(0.549) TCGA-39-5016-01 6 31608925 31608925 C A BAG6 Missense_Mutation p.G885W 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-39-5016-01 6 36929663 36929663 G A PI16 Missense_Mutation p.G169R 0.15 deleterious(0) probably_damaging(1) TCGA-39-5016-01 6 38840354 38840354 G - DNAH8 Frame_Shift_Del p.S2130Vfs*12 0.24 TCGA-39-5016-01 6 42227438 42227438 C A TRERF1 Silent p.P636P 0.22 TCGA-39-5016-01 6 43475243 43475243 C T LRRC73 Silent p.R277R 0.29 TCGA-39-5016-01 6 46658129 46658129 G T TDRD6 Missense_Mutation p.C755F 0.21 tolerated(0.72) benign(0) TCGA-39-5016-01 6 46828476 46828476 G C GPR116 Silent p.T785T 0.21 TCGA-39-5016-01 6 46991822 46991822 G C GPR110 Missense_Mutation p.L137V 0.16 tolerated(0.19) benign(0.004) TCGA-39-5016-01 6 49665584 49665584 T A CRISP2 Missense_Mutation p.Q168H 0.18 tolerated(0.39) benign(0.063) TCGA-39-5016-01 6 51920404 51920404 C G PKHD1 Missense_Mutation p.R606P 0.17 tolerated(0.16) possibly_damaging(0.572) TCGA-39-5016-01 6 52268189 52268189 C A PAQR8 Missense_Mutation p.H60N 0.34 deleterious(0) benign(0.048) TCGA-39-5016-01 6 63995609 63995609 A G LGSN Silent p.S71S 0.28 TCGA-39-5016-01 6 70639375 70639375 A C COL19A1 Missense_Mutation p.E150A 0.26 tolerated(0.57) unknown(0) TCGA-39-5016-01 6 76545620 76545620 A T MYO6 Missense_Mutation p.Y167F 0.23 tolerated(0.06) unknown(0) TCGA-39-5016-01 6 87969153 87969153 G C ZNF292 Missense_Mutation p.E1936Q 0.45 tolerated(0.05) probably_damaging(0.997) TCGA-39-5016-01 6 88769251 88769251 A C SPACA1 Silent p.T185T 0.25 TCGA-39-5016-01 7 100385658 100385658 G A ZAN Missense_Mutation p.R2375H 0.11 unknown(0) TCGA-39-5016-01 7 111368316 111368316 C G DOCK4 3'UTR 0.40 TCGA-39-5016-01 7 111540528 111540528 T C DOCK4 Missense_Mutation p.H461R 0.12 deleterious(0) probably_damaging(0.995) TCGA-39-5016-01 7 116739883 116739883 A T ST7 Silent p.I73I 0.41 TCGA-39-5016-01 7 123332580 123332580 C A WASL Missense_Mutation p.G390C 0.24 tolerated(0.06) unknown(0) TCGA-39-5016-01 7 128032926 128032926 C T IMPDH1 3'UTR 0.67 TCGA-39-5016-01 7 137531210 137531210 G T DGKI Nonsense_Mutation p.Y133* 0.08 TCGA-39-5016-01 7 138394385 138394385 C T ATP6V0A4 Missense_Mutation p.A805T 0.21 tolerated(0.45) probably_damaging(1) TCGA-39-5016-01 7 138566135 138566135 T G KIAA1549 Silent p.R1410R 0.19 TCGA-39-5016-01 7 139257879 139257879 C T HIPK2 Missense_Mutation p.V1131M 0.25 tolerated(0.2) benign(0.009) TCGA-39-5016-01 7 142001083 142001083 G T TRBV2 Missense_Mutation p.G26W 0.13 TCGA-39-5016-01 7 142498768 142498768 G C TRBC2 Missense_Mutation p.E15D 0.14 tolerated(0.13) benign(0.014) TCGA-39-5016-01 7 143141257 143141257 A G TAS2R60 Missense_Mutation p.S238G 0.21 tolerated(0.29) benign(0.171) TCGA-39-5016-01 7 143748276 143748276 C T OR2A5 Missense_Mutation p.A261V 0.42 tolerated(0.79) benign(0.019) TCGA-39-5016-01 7 150554701 150554701 C T AOC1 Silent p.V381V 0.17 TCGA-39-5016-01 7 150644067 150644067 G A KCNH2 Silent p.P1076P 0.39 TCGA-39-5016-01 7 150916197 150916197 G A ABCF2 Nonsense_Mutation p.Q324* 0.15 TCGA-39-5016-01 7 150930986 150930986 G C CHPF2 5'UTR 0.15 TCGA-39-5016-01 7 31682650 31682651 CC - CCDC129 Frame_Shift_Del p.P582Hfs*7 0.31 TCGA-39-5016-01 7 37780012 37780012 C A GPR141 Missense_Mutation p.T6N 0.27 tolerated(0.48) benign(0.039) TCGA-39-5016-01 7 38393340 38393340 G C TRGV4 Silent p.V110V 0.14 TCGA-39-5016-01 7 53103474 53103474 C T POM121L12 Missense_Mutation p.P37L 0.29 tolerated(1) probably_damaging(0.958) TCGA-39-5016-01 7 63809251 63809251 G T ZNF736 Missense_Mutation p.G337V 0.22 deleterious(0) probably_damaging(0.999) TCGA-39-5016-01 7 66774573 66774573 G T STAG3L4 RNA 0.53 TCGA-39-5016-01 7 72742586 72742586 C T FKBP6 Silent p.Y22Y 0.09 TCGA-39-5016-01 7 83023654 83023654 C A SEMA3E Missense_Mutation p.D487Y 0.47 deleterious(0.04) benign(0.285) TCGA-39-5016-01 7 89939616 89939616 A G C7orf63 3'UTR 0.17 TCGA-39-5016-01 7 90226026 90226026 C A AC002456.2 5'Flank 0.19 TCGA-39-5016-01 7 92837893 92837893 C T HEPACAM2 Missense_Mutation p.G338R 0.25 tolerated(0.06) possibly_damaging(0.456) TCGA-39-5016-01 7 97481511 97481511 C T ASNS 3'UTR 0.34 TCGA-39-5016-01 7 97834823 97834823 G A LMTK2 3'UTR 0.10 TCGA-39-5016-01 7 99013774 99013774 G A BUD31 Silent p.P36P 0.08 TCGA-39-5016-01 7 99441866 99441866 G A CYP3A43 Splice_Site p.X106_splice 0.06 TCGA-39-5016-01 8 100821701 100821701 G T VPS13B Missense_Mutation p.R2705S 0.32 deleterious(0.02) benign(0) TCGA-39-5016-01 8 103664217 103664217 A C KLF10 Missense_Mutation p.S115A 0.35 tolerated(0.56) benign(0.002) TCGA-39-5016-01 8 108913135 108913135 A C RSPO2 3'UTR 0.31 TCGA-39-5016-01 8 117669519 117669519 T C EIF3H Silent p.L164L 0.35 TCGA-39-5016-01 8 125073014 125073014 G T FER1L6 Intron 0.39 TCGA-39-5016-01 8 12957314 12957314 G A DLC1 Silent p.H844H 0.53 TCGA-39-5016-01 8 133925455 133925455 G C TG Silent p.S1441S 0.11 TCGA-39-5016-01 8 139149433 139149433 G T FAM135B Silent p.A1324A 0.26 TCGA-39-5016-01 8 139190828 139190828 G T FAM135B Missense_Mutation p.L327M 0.27 deleterious(0.02) possibly_damaging(0.734) TCGA-39-5016-01 8 139825186 139825186 C T COL22A1 Missense_Mutation p.G441D 0.20 unknown(0) TCGA-39-5016-01 8 144809619 144809619 C A FAM83H Missense_Mutation p.R671L 0.27 deleterious(0) probably_damaging(0.998) TCGA-39-5016-01 8 145659530 145659530 C A TONSL Missense_Mutation p.R1073L 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-39-5016-01 8 17063163 17063163 G - ZDHHC2 Splice_Site p.X160_splice 0.22 TCGA-39-5016-01 8 17415842 17415842 G T SLC7A2 Missense_Mutation p.D452Y 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-39-5016-01 8 20112359 20112359 G C LZTS1 Missense_Mutation p.Q112E 0.13 deleterious(0.02) probably_damaging(0.966) TCGA-39-5016-01 8 29927377 29927377 A T TMEM66 Missense_Mutation p.Y161N 0.34 tolerated(0.31) probably_damaging(0.925) TCGA-39-5016-01 8 38189054 38189054 C A WHSC1L1 Silent p.A320A 0.58 TCGA-39-5016-01 8 41518997 41518997 C A ANK1 Intron 0.16 TCGA-39-5016-01 8 4495076 4495076 C A CSMD1 Missense_Mutation p.Q30H 0.17 possibly_damaging(0.66) TCGA-39-5016-01 8 52232429 52232429 G T PXDNL 3'UTR 0.23 TCGA-39-5016-01 8 55542501 55542501 A C RP1 Missense_Mutation p.N2020T 0.16 tolerated(0.05) possibly_damaging(0.776) TCGA-39-5016-01 8 59059454 59059454 C A FAM110B Missense_Mutation p.P222H 0.14 deleterious(0.03) probably_damaging(0.981) TCGA-39-5016-01 8 66525572 66525572 C T ARMC1 Missense_Mutation p.M124I 0.20 tolerated(0.2) benign(0.015) TCGA-39-5016-01 8 68049816 68049816 G T CSPP1 Missense_Mutation p.R646S 0.33 deleterious(0) probably_damaging(0.987) TCGA-39-5016-01 8 77616580 77616580 C T ZFHX4 Missense_Mutation p.A86V 0.15 possibly_damaging(0.682) TCGA-39-5016-01 8 87917320 87917320 G A CNBD1 Missense_Mutation p.S57N 0.22 tolerated(0.32) benign(0.079) TCGA-39-5016-01 9 104297792 104297792 G A RNF20 Silent p.G29G 0.50 TCGA-39-5016-01 9 125622333 125622333 T A RC3H2 Missense_Mutation p.E571V 0.41 tolerated(0.08) possibly_damaging(0.885) TCGA-39-5016-01 9 132590389 132590389 G A C9orf78 3'UTR 0.28 TCGA-39-5016-01 9 133542181 133542181 G A PRDM12 Nonsense_Mutation p.W137* 0.41 TCGA-39-5016-01 9 133750280 133750280 G T ABL1 Missense_Mutation p.V390L 0.33 deleterious(0.02) possibly_damaging(0.643) TCGA-39-5016-01 9 135251316 135251316 G A TTF1 Missense_Mutation p.R902W 0.48 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-39-5016-01 9 135772037 135772037 C T TSC1 Missense_Mutation p.R1027Q 0.25 tolerated(0.5) benign(0.336) TCGA-39-5016-01 9 136234199 136234199 G A SURF4 Silent p.T57T 0.23 TCGA-39-5016-01 9 138684116 138684116 C G KCNT1 3'UTR 0.20 TCGA-39-5016-01 9 19372177 19372177 G T DENND4C 3'UTR 0.53 TCGA-39-5016-01 9 20413751 20413751 C G MLLT3 Missense_Mutation p.D365H 0.44 deleterious(0.04) probably_damaging(0.997) TCGA-39-5016-01 9 27949218 27949218 G T LINGO2 Silent p.I484I 0.40 TCGA-39-5016-01 9 70177924 70177924 G A FOXD4L5 Silent p.S20S 0.19 TCGA-39-5016-01 9 71628641 71628641 T C PRKACG Missense_Mutation p.Y123C 0.30 deleterious(0) probably_damaging(0.998) TCGA-39-5016-01 9 72435743 72435743 G A C9orf135 5'UTR 0.38 TCGA-39-5016-01 9 74842916 74842916 C T GDA Nonsense_Mutation p.R294* 0.33 TCGA-39-5016-01 9 90503242 90503242 C A SPATA31E1 Silent p.G1280G 0.34 TCGA-39-5016-01 9 94172985 94172985 T A NFIL3 Missense_Mutation p.K11M 0.32 deleterious(0) possibly_damaging(0.868) TCGA-39-5016-01 X 106797689 106797689 G T FRMPD3 Missense_Mutation p.E272D 0.43 tolerated(0.97) benign(0.237) TCGA-39-5016-01 X 108625392 108625392 C A GUCY2F Silent p.L1035L 0.61 TCGA-39-5016-01 X 110489755 110489755 G C CAPN6 3'UTR 0.76 TCGA-39-5016-01 X 142795233 142795233 G T SPANXN2 Missense_Mutation p.Q149K 0.59 tolerated(0.95) unknown(0) TCGA-39-5016-01 X 153279561 153279561 G C IRAK1 Missense_Mutation p.L491V 0.71 tolerated(0.32) possibly_damaging(0.84) TCGA-39-5016-01 X 26212893 26212893 C G MAGEB6 Missense_Mutation p.F310L 0.69 tolerated(0.07) probably_damaging(0.973) TCGA-39-5016-01 X 50213033 50213033 C T DGKK Intron 0.57 TCGA-39-5016-01 X 54955360 54955360 G A TRO Missense_Mutation p.D735N 0.53 tolerated(0.09) unknown(0) TCGA-39-5016-01 X 63488712 63488712 T C MTMR8 Missense_Mutation p.D607G 0.62 tolerated_low_confidence(0.11) benign(0.027) TCGA-39-5016-01 X 64749594 64749594 G C LAS1L Missense_Mutation p.P227A 0.64 tolerated(0.08) benign(0.011) TCGA-39-5016-01 X 71830999 71830999 C T PHKA1 Missense_Mutation p.R802Q 0.30 tolerated(0.62) benign(0.01) TCGA-39-5016-01 X 73061238 73061238 C G XIST RNA 0.62 TCGA-39-5016-01 X 75650025 75650025 C T MAGEE1 Missense_Mutation p.P568S 0.66 tolerated(0.09) probably_damaging(0.914) TCGA-39-5019-01 10 22676859 22676859 C A SPAG6 Missense_Mutation p.D262E 0.41 deleterious(0.01) probably_damaging(0.986) TCGA-39-5019-01 10 68979440 68979440 T G CTNNA3 Silent p.S256S 0.36 TCGA-39-5019-01 10 74035045 74035045 G T DDIT4 3'UTR 0.33 TCGA-39-5019-01 10 81070737 81070737 C A ZMIZ1 Missense_Mutation p.H964Q 0.35 possibly_damaging(0.785) TCGA-39-5019-01 11 124005701 124005701 C T VWA5A Missense_Mutation p.T440I 0.14 tolerated(0.06) possibly_damaging(0.845) TCGA-39-5019-01 11 17542900 17542900 T C USH1C Missense_Mutation p.M360V 0.41 deleterious_low_confidence(0) benign(0.002) TCGA-39-5019-01 11 55587340 55587340 G T OR5D18 Missense_Mutation p.A79S 0.33 deleterious(0.03) benign(0.072) TCGA-39-5019-01 11 55607000 55607000 T C OR5D16 Missense_Mutation p.L258P 0.06 deleterious(0) probably_damaging(0.971) TCGA-39-5019-01 11 57117346 57117346 C A P2RX3 Missense_Mutation p.Q227K 0.28 deleterious(0.01) probably_damaging(0.992) TCGA-39-5019-01 11 62483404 62483404 C A HNRNPUL2 Missense_Mutation p.G663W 0.27 tolerated(0.06) probably_damaging(0.998) TCGA-39-5019-01 11 63071614 63071614 G T SLC22A10 Silent p.L440L 0.32 TCGA-39-5019-01 11 6340731 6340731 G A PRKCDBP Nonsense_Mutation p.Q150* 0.31 TCGA-39-5019-01 11 66062455 66062455 C T TMEM151A Silent p.N246N 0.43 TCGA-39-5019-01 11 66243384 66243384 C G PELI3 Missense_Mutation p.L386V 0.32 deleterious(0.01) benign(0.09) TCGA-39-5019-01 11 74644890 74644890 A G XRRA1 Missense_Mutation p.S103P 0.53 deleterious(0) possibly_damaging(0.878) TCGA-39-5019-01 11 77885071 77885071 T C KCTD21 Missense_Mutation p.H177R 0.41 tolerated(0.46) benign(0) TCGA-39-5019-01 11 83809999 83809999 G T DLG2 Missense_Mutation p.P239Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-39-5019-01 11 83810000 83810000 G T DLG2 Missense_Mutation p.P239T 0.36 deleterious(0.04) probably_damaging(0.997) TCGA-39-5019-01 12 11461806 11461806 T C PRB4 Silent p.E37E 0.09 TCGA-39-5019-01 12 124311350 124311350 C T DNAH10 Silent p.G1314G 0.42 TCGA-39-5019-01 12 129431905 129431905 G T GLT1D1 Nonsense_Mutation p.G148* 0.13 TCGA-39-5019-01 12 130649114 130649114 A T FZD10 Missense_Mutation p.S543C 0.40 deleterious(0.02) benign(0.28) TCGA-39-5019-01 12 22068692 22068692 A T ABCC9 Silent p.P242P 0.08 TCGA-39-5019-01 12 28122817 28122817 T C PTHLH Intron 0.43 TCGA-39-5019-01 12 53448212 53448212 G C TENC1 Missense_Mutation p.R180P 0.10 tolerated(0.14) possibly_damaging(0.836) TCGA-39-5019-01 12 53453230 53453230 G T TENC1 Missense_Mutation p.C612F 0.35 tolerated(0.51) benign(0.007) TCGA-39-5019-01 12 53454751 53454751 C T TENC1 Nonsense_Mutation p.R1031* 0.38 TCGA-39-5019-01 12 54427002 54427002 G A HOXC5 Silent p.E32E 0.46 TCGA-39-5019-01 12 63042249 63042249 C A PPM1H 3'UTR 0.31 TCGA-39-5019-01 12 6700653 6700653 C G CHD4 Missense_Mutation p.E1107Q 0.10 deleterious(0.04) probably_damaging(0.913) TCGA-39-5019-01 12 68551865 68551865 C G IFNG Missense_Mutation p.R65T 0.48 tolerated(0.22) benign(0.372) TCGA-39-5019-01 12 93804845 93804845 A G UBE2N Silent p.C87C 0.24 TCGA-39-5019-01 12 94697543 94697543 T A PLXNC1 Silent p.T1466T 0.10 TCGA-39-5019-01 12 95602706 95602706 T C FGD6 Missense_Mutation p.D785G 0.10 deleterious(0.03) benign(0.071) TCGA-39-5019-01 12 97093757 97093757 C A C12orf55 Silent p.V2120V 0.30 TCGA-39-5019-01 13 109365035 109365035 G T MYO16 Missense_Mutation p.D85Y 0.38 deleterious(0) probably_damaging(1) TCGA-39-5019-01 13 19751242 19751242 G C TUBA3C Missense_Mutation p.A294G 0.03 deleterious_low_confidence(0) benign(0.381) TCGA-39-5019-01 13 29599515 29599515 C A MTUS2 Missense_Mutation p.A237E 0.39 tolerated(0.27) benign(0.308) TCGA-39-5019-01 13 35769999 35769999 A G NBEA Splice_Site p.X1643_splice 0.34 TCGA-39-5019-01 14 19553578 19553578 G A POTEG Missense_Mutation p.M54I 0.08 deleterious_low_confidence(0.03) benign(0.019) TCGA-39-5019-01 14 20020059 20020059 C T POTEM Missense_Mutation p.M54I 0.11 deleterious_low_confidence(0.02) benign(0.002) TCGA-39-5019-01 14 20249408 20249408 G A OR4M1 Silent p.L309L 0.38 TCGA-39-5019-01 14 22600770 22600770 A C TRAV8-7 Missense_Mutation p.K39Q 0.44 deleterious(0.05) benign(0.194) TCGA-39-5019-01 14 23313949 23313949 T C MMP14 Missense_Mutation p.W421R 0.04 deleterious(0) probably_damaging(0.966) TCGA-39-5019-01 14 23855298 23855298 C A MYH6 Missense_Mutation p.D1668Y 0.41 deleterious(0) probably_damaging(0.995) TCGA-39-5019-01 14 60193847 60193847 G T RTN1 Missense_Mutation p.P519T 0.40 tolerated(0.25) benign(0.007) TCGA-39-5019-01 14 69704299 69704299 G A EXD2 Missense_Mutation p.V434M 0.41 deleterious(0) probably_damaging(0.917) TCGA-39-5019-01 14 74036246 74036246 G T ACOT2 Missense_Mutation p.R101L 0.42 tolerated(0.1) benign(0.047) TCGA-39-5019-01 15 100339924 100339924 G A DNM1P46 RNA 0.40 TCGA-39-5019-01 15 25232096 25232096 C G SNORD108 RNA 0.29 TCGA-39-5019-01 15 86124576 86124576 G T AKAP13 Missense_Mutation p.G1093W 0.40 deleterious_low_confidence(0.03) benign(0.245) TCGA-39-5019-01 16 20648489 20648489 C A ACSM1 Intron 0.19 TCGA-39-5019-01 16 22261999 22261999 G T EEF2K Nonsense_Mutation p.E145* 0.17 TCGA-39-5019-01 16 28734622 28734622 G T EIF3C Missense_Mutation p.R305L 0.16 tolerated(0.09) benign(0.028) TCGA-39-5019-01 16 84778370 84778370 A G USP10 Missense_Mutation p.T95A 0.05 tolerated_low_confidence(0.23) benign(0.019) TCGA-39-5019-01 17 10400460 10400460 G T MYH1 Missense_Mutation p.H1528N 0.31 tolerated(0.05) benign(0.012) TCGA-39-5019-01 17 16342876 16342876 A C TRPV2 3'Flank 0.19 TCGA-39-5019-01 17 28419089 28419089 C T EFCAB5 Missense_Mutation p.R1380C 0.31 deleterious(0) possibly_damaging(0.502) TCGA-39-5019-01 17 33338919 33338919 G A RFFL 3'UTR 0.30 TCGA-39-5019-01 17 37213293 37213293 C A CTD-2206N4.4 RNA 0.50 TCGA-39-5019-01 17 38024581 38024581 G T ZPBP2 5'UTR 0.52 TCGA-39-5019-01 17 44806225 44806225 C T NSF Silent p.Y611Y 0.21 TCGA-39-5019-01 17 65353488 65353488 C T PSMD12 Silent p.E76E 0.08 TCGA-39-5019-01 17 67170799 67170799 G A ABCA10 Silent p.Y999Y 0.19 TCGA-39-5019-01 17 7504844 7504844 C T FXR2 Splice_Site p.X182_splice 0.20 TCGA-39-5019-01 17 7577127 7577127 C A TP53 Nonsense_Mutation p.E271* 0.27 TCGA-39-5019-01 17 76400029 76400029 G T PGS1 Missense_Mutation p.A421S 0.07 deleterious(0) benign(0.141) TCGA-39-5019-01 17 76446779 76446779 G A DNAH17 Silent p.S3614S 0.54 TCGA-39-5019-01 17 76870019 76870019 C G TIMP2 Intron 0.07 TCGA-39-5019-01 18 3879555 3879555 C T DLGAP1 Missense_Mutation p.E172K 0.16 tolerated(0.61) benign(0.049) TCGA-39-5019-01 18 44416462 44416462 T A PIAS2 Missense_Mutation p.T354S 0.34 tolerated(0.43) probably_damaging(0.942) TCGA-39-5019-01 18 44561068 44561068 C A TCEB3B Missense_Mutation p.G190W 0.06 tolerated(0.19) probably_damaging(0.986) TCGA-39-5019-01 18 47108800 47108800 T C LIPG Missense_Mutation p.Y369H 0.14 tolerated(0.49) benign(0.046) TCGA-39-5019-01 19 12945971 12945971 C T RTBDN 5'UTR 0.10 TCGA-39-5019-01 19 14070631 14070631 A G DCAF15 Missense_Mutation p.N455S 0.26 tolerated(0.16) probably_damaging(0.973) TCGA-39-5019-01 19 16034683 16034683 A G CYP4F11 Missense_Mutation p.F286S 0.35 tolerated(0.12) benign(0.082) TCGA-39-5019-01 19 17435528 17435528 G T ANO8 Nonsense_Mutation p.S1110* 0.05 TCGA-39-5019-01 19 18561418 18561418 C T ELL Missense_Mutation p.R445H 0.08 tolerated(0.59) benign(0) TCGA-39-5019-01 19 40097910 40097910 G A LGALS13 Silent p.P117P 0.27 TCGA-39-5019-01 19 42754489 42754489 G A ERF Missense_Mutation p.A84V 0.34 deleterious(0) probably_damaging(1) TCGA-39-5019-01 19 46124521 46124521 T G EML2 Missense_Mutation p.T557P 0.14 deleterious(0) probably_damaging(0.921) TCGA-39-5019-01 19 49842048 49842048 C A CD37 Missense_Mutation p.S180Y 0.31 deleterious(0) probably_damaging(1) TCGA-39-5019-01 19 50812387 50812387 G T MYH14 Silent p.S1971S 0.16 TCGA-39-5019-01 19 55708701 55708701 G - PTPRH Frame_Shift_Del p.H592Tfs*61 0.16 TCGA-39-5019-01 19 56419275 56419275 G T NLRP13 Missense_Mutation p.A777D 0.20 deleterious(0.02) benign(0.033) TCGA-39-5019-01 19 57967296 57967296 G A VN1R1 Missense_Mutation p.L187F 0.07 tolerated(0.45) possibly_damaging(0.76) TCGA-39-5019-01 19 59061390 59061390 C T TRIM28 Silent p.S727S 0.18 TCGA-39-5019-01 1 115420804 115420804 T A SYCP1 Missense_Mutation p.N297K 0.10 tolerated(0.46) possibly_damaging(0.608) TCGA-39-5019-01 1 152278012 152278012 C A FLG Missense_Mutation p.S3117I 0.50 unknown(0) TCGA-39-5019-01 1 154245822 154245822 C T HAX1 Missense_Mutation p.P22S 0.04 deleterious(0.01) possibly_damaging(0.586) TCGA-39-5019-01 1 154680513 154680513 C - KCNN3 Frame_Shift_Del p.S712Tfs*22 0.34 TCGA-39-5019-01 1 158669893 158669893 G A OR6K2 Silent p.L184L 0.27 TCGA-39-5019-01 1 158670088 158670088 A T OR6K2 Missense_Mutation p.F119I 0.36 tolerated(0.88) benign(0.001) TCGA-39-5019-01 1 167097527 167097527 G T DUSP27 Missense_Mutation p.E1053D 0.32 deleterious(0.04) possibly_damaging(0.622) TCGA-39-5019-01 1 169565276 169565276 C - SELP Frame_Shift_Del p.G663Vfs*17 0.34 TCGA-39-5019-01 1 169702053 169702053 G C SELE Missense_Mutation p.Q42E 0.35 tolerated(0.41) benign(0.002) TCGA-39-5019-01 1 171621272 171621272 C T MYOC Silent p.R160R 0.09 TCGA-39-5019-01 1 17422416 17422416 G T PADI2 Missense_Mutation p.N133K 0.42 tolerated(0.37) probably_damaging(0.923) TCGA-39-5019-01 1 179965809 179965809 G T CEP350 Nonsense_Mutation p.E173* 0.17 TCGA-39-5019-01 1 193218963 193218963 T C CDC73 Silent p.D507D 0.09 TCGA-39-5019-01 1 198721755 198721755 A G PTPRC Silent p.Q1121Q 0.38 TCGA-39-5019-01 1 207680060 207680060 T C CR1 Silent p.R101R 0.14 TCGA-39-5019-01 1 212798756 212798756 G T FAM71A Missense_Mutation p.E179D 0.09 tolerated(1) benign(0.004) TCGA-39-5019-01 1 214209146 214209146 C T PROX1 Missense_Mutation p.P728L 0.08 deleterious(0.01) possibly_damaging(0.7) TCGA-39-5019-01 1 234561477 234561477 C A TARBP1 Missense_Mutation p.G1129V 0.33 deleterious(0.05) possibly_damaging(0.448) TCGA-39-5019-01 1 248201738 248201738 C G OR2L2 Missense_Mutation p.P57A 0.11 deleterious(0) possibly_damaging(0.858) TCGA-39-5019-01 1 248570189 248570189 G A OR2T1 Silent p.V298V 0.41 TCGA-39-5019-01 1 99470041 99470041 C A LPPR5 Missense_Mutation p.V63L 0.31 tolerated(0.15) benign(0.004) TCGA-39-5019-01 20 16359697 16359697 C T KIF16B Missense_Mutation p.E984K 0.07 tolerated_low_confidence(0.08) benign(0.12) TCGA-39-5019-01 20 20177230 20177230 G T C20orf26 Missense_Mutation p.R536L 0.11 deleterious(0) probably_damaging(0.987) TCGA-39-5019-01 20 29623225 29623225 T A FRG1B Missense_Mutation p.F13I 0.03 tolerated(0.07) benign(0.072) TCGA-39-5019-01 20 29960893 29960893 A C DEFB118 Missense_Mutation p.S98R 0.12 deleterious(0.02) possibly_damaging(0.766) TCGA-39-5019-01 20 29960894 29960894 G T DEFB118 Missense_Mutation p.S98I 0.11 deleterious(0.02) possibly_damaging(0.766) TCGA-39-5019-01 20 30784121 30784121 T C PLAGL2 3'UTR 0.62 TCGA-39-5019-01 20 35533876 35533876 G A SAMHD1 Missense_Mutation p.T434I 0.10 deleterious(0.02) benign(0.14) TCGA-39-5019-01 20 42969953 42969953 C A R3HDML Missense_Mutation p.Q127K 0.43 deleterious(0.04) benign(0.002) TCGA-39-5019-01 20 57769077 57769077 G A ZNF831 Silent p.A1001A 0.41 TCGA-39-5019-01 20 5953813 5953813 C G MCM8 Missense_Mutation p.P456A 0.27 deleterious(0) probably_damaging(1) TCGA-39-5019-01 20 9417754 9417754 C T PLCB4 Missense_Mutation p.P895S 0.23 tolerated(0.32) benign(0.164) TCGA-39-5019-01 21 10862961 10862961 G A IGHV1OR21-1 Missense_Mutation p.R86K 0.21 tolerated(0.45) possibly_damaging(0.772) TCGA-39-5019-01 21 33371224 33371224 C T HUNK Silent p.H624H 0.30 TCGA-39-5019-01 22 20128226 20128226 G T ZDHHC8 Silent p.A249A 0.34 TCGA-39-5019-01 22 24034461 24034461 C A RGL4 Intron 0.32 TCGA-39-5019-01 22 29956798 29956798 G A NIPSNAP1 Missense_Mutation p.R211W 0.10 deleterious(0) probably_damaging(1) TCGA-39-5019-01 2 102644717 102644717 C T IL1R2 Silent p.L354L 0.43 TCGA-39-5019-01 2 11758996 11758996 G T GREB1 Missense_Mutation p.R1332L 0.27 tolerated(0.11) benign(0.313) TCGA-39-5019-01 2 144764930 144764930 G C GTDC1 Missense_Mutation p.R232G 0.34 tolerated_low_confidence(0.11) benign(0.001) TCGA-39-5019-01 2 152289653 152289653 A G RIF1 Missense_Mutation p.R330G 0.29 deleterious(0) probably_damaging(0.997) TCGA-39-5019-01 2 15470844 15470844 A - NBAS Frame_Shift_Del p.W1409Gfs*7 0.17 TCGA-39-5019-01 2 164466434 164466434 T A FIGN Silent p.I636I 0.08 TCGA-39-5019-01 2 179396364 179396364 G T TTN Missense_Mutation p.T34993K 0.36 TCGA-39-5019-01 2 179413276 179413276 T C TTN Missense_Mutation p.K31026R 0.12 TCGA-39-5019-01 2 179443382 179443382 A T TTN Missense_Mutation p.L22762Q 0.14 TCGA-39-5019-01 2 179451523 179451523 G A TTN Missense_Mutation p.P21369S 0.32 TCGA-39-5019-01 2 20131147 20131147 T C WDR35 Silent p.K960K 0.07 TCGA-39-5019-01 2 205969167 205969167 G T PARD3B Missense_Mutation p.L174F 0.30 tolerated(0.29) possibly_damaging(0.576) TCGA-39-5019-01 2 205969168 205969168 G T PARD3B Nonsense_Mutation p.E175* 0.30 TCGA-39-5019-01 2 216284091 216284091 C G FN1 Missense_Mutation p.E565Q 0.09 tolerated(0.27) possibly_damaging(0.708) TCGA-39-5019-01 2 228009244 228009244 T G COL4A4 Missense_Mutation p.Q34H 0.24 benign(0.021) TCGA-39-5019-01 2 228770965 228770965 T A DAW1 Missense_Mutation p.L257I 0.39 deleterious(0.03) probably_damaging(0.996) TCGA-39-5019-01 2 228881326 228881326 T A SPHKAP Missense_Mutation p.N1415I 0.39 tolerated(0.11) benign(0.091) TCGA-39-5019-01 2 27599539 27599539 G T SNX17 Missense_Mutation p.V456F 0.46 tolerated(1) benign(0.003) TCGA-39-5019-01 2 32361662 32361662 C G SPAST Missense_Mutation p.L426V 0.10 deleterious(0) probably_damaging(0.966) TCGA-39-5019-01 2 37374967 37374967 T C EIF2AK2 Splice_Site 0.08 TCGA-39-5019-01 2 40656652 40656652 G A SLC8A1 Silent p.L257L 0.10 TCGA-39-5019-01 2 43452225 43452225 C T ZFP36L2 Missense_Mutation p.D240N 0.10 tolerated(0.16) benign(0.094) TCGA-39-5019-01 2 43520205 43520205 G A THADA Missense_Mutation p.A1529V 0.11 tolerated(0.25) benign(0.013) TCGA-39-5019-01 2 46986955 46986955 G T SOCS5 Missense_Mutation p.R429L 0.44 deleterious(0.01) benign(0.04) TCGA-39-5019-01 2 55795348 55795348 C G SMEK2 Missense_Mutation p.L639F 0.16 deleterious(0.03) benign(0.141) TCGA-39-5019-01 2 669658 669658 C T TMEM18 Silent p.K115K 0.27 TCGA-39-5019-01 2 7137071 7137071 G C RNF144A Missense_Mutation p.R5T 0.06 tolerated_low_confidence(0.5) benign(0.125) TCGA-39-5019-01 2 86374846 86374846 T A IMMT Missense_Mutation p.E504D 0.11 tolerated(0.1) benign(0.077) TCGA-39-5019-01 2 89513339 89513339 A T IGKV1-27 Missense_Mutation p.L15H 0.09 deleterious(0) probably_damaging(0.998) TCGA-39-5019-01 2 90193339 90193339 C A IGKV1D-13 Missense_Mutation p.S89Y 0.30 deleterious(0.04) benign(0.246) TCGA-39-5019-01 2 96993095 96993095 C - ITPRIPL1 Frame_Shift_Del p.P252Hfs*10 0.26 TCGA-39-5019-01 2 97217930 97217930 C T ARID5A Silent p.P555P 0.31 TCGA-39-5019-01 3 100594406 100594406 G C ABI3BP Missense_Mutation p.H262D 0.29 deleterious(0.02) benign(0.227) TCGA-39-5019-01 3 130187876 130187876 C T COL6A5 Missense_Mutation p.P2343L 0.11 tolerated(0.07) probably_damaging(1) TCGA-39-5019-01 3 138739077 138739077 C T PRR23B Missense_Mutation p.A143T 0.17 tolerated(0.07) benign(0.239) TCGA-39-5019-01 3 147128271 147128271 G A ZIC1 Silent p.S124S 0.19 TCGA-39-5019-01 3 155206556 155206556 A T PLCH1 Missense_Mutation p.V799E 0.22 deleterious(0) probably_damaging(0.974) TCGA-39-5019-01 3 195701397 195701397 C A SDHAP1 RNA 0.07 TCGA-39-5019-01 3 52526092 52526092 C G NISCH Missense_Mutation p.P1370R 0.30 deleterious(0) probably_damaging(0.987) TCGA-39-5019-01 3 53908307 53908307 G C ACTR8 Missense_Mutation p.C332W 0.11 tolerated(0.05) probably_damaging(0.994) TCGA-39-5019-01 3 99891191 99891191 G C CMSS1 Missense_Mutation p.R204P 0.07 tolerated(0.17) possibly_damaging(0.587) TCGA-39-5019-01 4 155237114 155237114 C T DCHS2 Silent p.L1227L 0.27 TCGA-39-5019-01 4 155531250 155531250 G T FGG Missense_Mutation p.D167E 0.36 tolerated(0.06) probably_damaging(0.999) TCGA-39-5019-01 4 49063890 49063890 C G CWH43 Missense_Mutation p.P695A 0.15 deleterious(0) probably_damaging(1) TCGA-39-5019-01 4 5418612 5418612 G T STK32B Silent p.V171V 0.37 TCGA-39-5019-01 4 57357606 57357606 A G SRP72 Silent p.K504K 0.23 TCGA-39-5019-01 4 73186501 73186501 G C ADAMTS3 Silent p.L344L 0.24 TCGA-39-5019-01 4 81952680 81952680 G A BMP3 Missense_Mutation p.G81E 0.18 tolerated(1) benign(0.001) TCGA-39-5019-01 4 8588916 8588916 C T GPR78 Silent p.A306A 0.28 TCGA-39-5019-01 4 88035845 88035845 C G AFF1 Silent p.A620A 0.05 TCGA-39-5019-01 5 101583092 101583092 C A SLCO4C1 Nonsense_Mutation p.E559* 0.31 TCGA-39-5019-01 5 133901824 133901824 G A JADE2 Missense_Mutation p.V330I 0.10 tolerated(1) benign(0.004) TCGA-39-5019-01 5 140515709 140515709 C A PCDHB5 Silent p.V231V 0.36 TCGA-39-5019-01 5 140574340 140574340 G T PCDHB10 Missense_Mutation p.V739L 0.09 tolerated_low_confidence(0.16) benign(0.062) TCGA-39-5019-01 5 140793265 140793265 C A PCDHGA10 Missense_Mutation p.Q175K 0.35 tolerated_low_confidence(0.19) benign(0.057) TCGA-39-5019-01 5 167933834 167933834 C A RARS Missense_Mutation p.D448E 0.23 deleterious(0) probably_damaging(0.959) TCGA-39-5019-01 5 176018407 176018407 C A CDHR2 Missense_Mutation p.A1219D 0.12 deleterious(0) probably_damaging(0.913) TCGA-39-5019-01 5 176859271 176859271 C T GRK6 Missense_Mutation p.A100V 0.06 tolerated(0.08) benign(0.03) TCGA-39-5019-01 5 33588803 33588803 C A ADAMTS12 Silent p.P922P 0.15 TCGA-39-5019-01 5 33937435 33937435 G T RXFP3 Missense_Mutation p.G197V 0.17 tolerated(0.1) possibly_damaging(0.587) TCGA-39-5019-01 5 36995735 36995735 C G NIPBL Missense_Mutation p.Q1045E 0.10 tolerated_low_confidence(0.44) benign(0.054) TCGA-39-5019-01 5 38350605 38350605 G A EGFLAM Silent p.E98E 0.19 TCGA-39-5019-01 5 41382282 41382282 T C PLCXD3 Missense_Mutation p.Y153C 0.09 tolerated(0.21) benign(0) TCGA-39-5019-01 5 45262686 45262686 C A HCN1 Silent p.A670A 0.18 TCGA-39-5019-01 5 5237099 5237099 C A ADAMTS16 Missense_Mutation p.L681I 0.09 deleterious(0) probably_damaging(0.999) TCGA-39-5019-01 6 106968897 106968897 A G AIM1 Missense_Mutation p.T864A 0.28 tolerated(0.1) benign(0.017) TCGA-39-5019-01 6 123116872 123116872 A G SMPDL3A Missense_Mutation p.T55A 0.28 tolerated(0.15) benign(0.088) TCGA-39-5019-01 6 131946127 131946127 C T MED23 Silent p.E54E 0.19 TCGA-39-5019-01 6 152576797 152576797 C T SYNE1 Missense_Mutation p.V6397I 0.17 probably_damaging(0.994) TCGA-39-5019-01 6 159653483 159653483 T C FNDC1 Missense_Mutation p.S647P 0.27 tolerated_low_confidence(0.42) unknown(0) TCGA-39-5019-01 6 44116675 44116675 A T TMEM63B Missense_Mutation p.Y469F 0.27 tolerated(0.2) benign(0.052) TCGA-39-5019-01 6 56707879 56707879 T A RP11-472M19.2 5'Flank 0.38 TCGA-39-5019-01 7 102939977 102939977 G T PMPCB Splice_Site p.X109_splice 0.08 TCGA-39-5019-01 7 103002523 103002523 G A PSMC2 Missense_Mutation p.G137E 0.21 deleterious(0) probably_damaging(1) TCGA-39-5019-01 7 131864544 131864544 G A PLXNA4 Missense_Mutation p.A1259V 0.28 deleterious(0.05) probably_damaging(0.971) TCGA-39-5019-01 7 132973849 132973849 T C EXOC4 Silent p.Y150Y 0.41 TCGA-39-5019-01 7 141491042 141491042 G - TAS2R5 Frame_Shift_Del p.R295Dfs*34 0.30 TCGA-39-5019-01 7 149148159 149148159 C A ZNF777 Missense_Mutation p.G340W 0.24 deleterious(0) probably_damaging(1) TCGA-39-5019-01 7 156967697 156967697 C T UBE3C Nonsense_Mutation p.Q143* 0.23 TCGA-39-5019-01 7 157926637 157926637 G T PTPRN2 Missense_Mutation p.H430N 0.08 tolerated(0.48) benign(0) TCGA-39-5019-01 7 16823143 16823143 G A TSPAN13 3'UTR 0.22 TCGA-39-5019-01 7 34009998 34009998 G A BMPER Missense_Mutation p.E154K 0.24 tolerated(0.94) benign(0) TCGA-39-5019-01 7 38505102 38505102 G C AMPH Missense_Mutation p.H238Q 0.30 tolerated(0.08) probably_damaging(0.979) TCGA-39-5019-01 7 40314128 40314128 G T SUGCT Missense_Mutation p.R205L 0.24 deleterious(0) probably_damaging(0.989) TCGA-39-5019-01 7 6213320 6213320 T C CYTH3 Missense_Mutation p.H138R 0.30 deleterious(0) probably_damaging(0.966) TCGA-39-5019-01 7 82582540 82582540 T C PCLO Missense_Mutation p.T2577A 0.34 unknown(0) TCGA-39-5019-01 7 95709710 95709710 C A DYNC1I1 Silent p.S579S 0.12 TCGA-39-5019-01 7 99691659 99691659 G A MCM7 Intron 0.26 TCGA-39-5019-01 7 99701047 99701047 C A AP4M1 Missense_Mutation p.Q123K 0.41 deleterious(0) probably_damaging(0.975) TCGA-39-5019-01 8 11302018 11302018 C A FAM167A 5'UTR 0.33 TCGA-39-5019-01 8 144550572 144550572 C T ZC3H3 Silent p.E695E 0.61 TCGA-39-5019-01 8 35648047 35648047 C A UNC5D Missense_Mutation p.A943D 0.67 tolerated_low_confidence(0.12) benign(0.022) TCGA-39-5019-01 8 39525515 39525515 A T ADAM18 Splice_Site p.X443_splice 0.65 TCGA-39-5019-01 8 53586629 53586629 T A RB1CC1 Nonsense_Mutation p.K260* 0.56 TCGA-39-5019-01 8 74894624 74894624 T A TMEM70 3'UTR 0.56 TCGA-39-5019-01 8 87126017 87126017 T G ATP6V0D2 Missense_Mutation p.I70M 0.37 deleterious(0.02) probably_damaging(0.941) TCGA-39-5019-01 9 136253268 136253268 A T C9orf96 Missense_Mutation p.N111I 0.10 deleterious(0.02) benign(0.288) TCGA-39-5019-01 9 137642656 137642656 C A COL5A1 Silent p.G530G 0.31 TCGA-39-5019-01 9 15745613 15745613 C T CCDC171 Silent p.D885D 0.10 TCGA-39-5019-01 9 32634826 32634826 G T TAF1L Missense_Mutation p.P251Q 0.36 deleterious(0) possibly_damaging(0.796) TCGA-39-5019-01 X 100364557 100364557 G A CENPI Missense_Mutation p.G154S 0.03 tolerated(0.32) benign(0.016) TCGA-39-5019-01 X 11308596 11308596 C A ARHGAP6 Intron 0.30 TCGA-39-5019-01 X 123514710 123514710 C T TENM1 Silent p.R2625R 0.35 TCGA-39-5019-01 X 129148208 129148208 A C BCORL1 Missense_Mutation p.D487A 0.06 possibly_damaging(0.524) TCGA-39-5019-01 X 151821421 151821421 G T GABRQ Missense_Mutation p.G526C 0.51 tolerated(1) benign(0.001) TCGA-39-5019-01 X 152936845 152936845 A G PNCK Intron 0.39 TCGA-39-5019-01 X 153171312 153171312 C A AVPR2 Missense_Mutation p.L118M 0.46 deleterious(0.04) probably_damaging(1) TCGA-39-5019-01 X 63445290 63445290 C A ASB12 Missense_Mutation p.A81S 0.28 deleterious(0) probably_damaging(0.996) TCGA-39-5021-01 10 105905258 105905258 T C WDR96 Missense_Mutation p.Y1307C 0.11 deleterious(0) probably_damaging(0.959) TCGA-39-5021-01 10 124605305 124605305 C T CUZD1 Missense_Mutation p.A19T 0.17 tolerated(0.07) benign(0.017) TCGA-39-5021-01 10 124605306 124605306 C T CUZD1 Silent p.L18L 0.17 TCGA-39-5021-01 10 128973697 128973697 C T FAM196A Silent p.Q321Q 0.18 TCGA-39-5021-01 10 14995911 14995911 G C DCLRE1C Missense_Mutation p.H33Q 0.17 deleterious(0) probably_damaging(1) TCGA-39-5021-01 10 17276803 17276803 G T VIM Missense_Mutation p.A332S 0.10 tolerated(0.49) benign(0.284) TCGA-39-5021-01 10 27326951 27326951 C T ANKRD26 Missense_Mutation p.R803K 0.06 tolerated(0.38) benign(0.009) TCGA-39-5021-01 10 27687254 27687254 G T PTCHD3 Missense_Mutation p.S758Y 0.23 tolerated(0.06) benign(0.078) TCGA-39-5021-01 10 31809110 31809110 T C ZEB1 Missense_Mutation p.Y284H 0.11 deleterious(0) probably_damaging(0.998) TCGA-39-5021-01 10 37508496 37508496 A T ANKRD30A Nonsense_Mutation p.R1230* 0.17 TCGA-39-5021-01 10 75519790 75519790 C T SEC24C Silent p.L166L 0.13 TCGA-39-5021-01 11 110450560 110450560 C A ARHGAP20 Missense_Mutation p.W1037L 0.11 deleterious(0) probably_damaging(0.999) TCGA-39-5021-01 11 124135307 124135307 A T OR8G5 Silent p.I195I 0.12 TCGA-39-5021-01 11 19955304 19955304 C T NAV2 Missense_Mutation p.A528V 0.43 tolerated_low_confidence(0.08) benign(0.013) TCGA-39-5021-01 11 46797843 46797843 C T CKAP5 Missense_Mutation p.E985K 0.15 deleterious(0.05) benign(0.348) TCGA-39-5021-01 11 48238812 48238812 T G OR4B1 Missense_Mutation p.F151V 0.31 deleterious(0.05) benign(0.02) TCGA-39-5021-01 11 5411216 5411216 G C OR51M1 Silent p.V196V 0.03 TCGA-39-5021-01 11 56949576 56949576 C A LRRC55 Missense_Mutation p.A70D 0.17 tolerated(0.09) probably_damaging(0.991) TCGA-39-5021-01 11 57569663 57569663 T G CTNND1 Missense_Mutation p.I472S 0.26 deleterious(0) probably_damaging(0.997) TCGA-39-5021-01 11 59943081 59943081 G A MS4A6A Missense_Mutation p.H143Y 0.17 tolerated(0.81) possibly_damaging(0.651) TCGA-39-5021-01 11 60182994 60182994 C A MS4A14 Missense_Mutation p.Q218K 0.09 deleterious(0.01) probably_damaging(0.972) TCGA-39-5021-01 11 61290739 61290739 G T SYT7 Nonsense_Mutation p.Y380* 0.11 TCGA-39-5021-01 11 64368969 64368969 G C SLC22A12 Missense_Mutation p.K536N 0.07 tolerated(0.08) possibly_damaging(0.649) TCGA-39-5021-01 11 64374839 64374839 G A NRXN2 Silent p.A1656A 0.12 TCGA-39-5021-01 11 71719783 71719783 C G NUMA1 Missense_Mutation p.D1723H 0.20 probably_damaging(1) TCGA-39-5021-01 11 78467899 78467899 C A TENM4 Missense_Mutation p.G903C 0.14 deleterious(0) probably_damaging(0.947) TCGA-39-5021-01 11 88911308 88911308 G A TYR Missense_Mutation p.A63T 0.12 tolerated(0.36) probably_damaging(0.91) TCGA-39-5021-01 11 9051542 9051542 G A SCUBE2 Missense_Mutation p.R741C 0.41 deleterious(0) probably_damaging(0.999) TCGA-39-5021-01 12 111079360 111079360 C T TCTN1 Missense_Mutation p.P373L 0.18 deleterious(0) probably_damaging(0.984) TCGA-39-5021-01 12 24995114 24995114 T A BCAT1 Missense_Mutation p.N252I 0.48 tolerated(0.11) benign(0.024) TCGA-39-5021-01 12 40681168 40681168 T C LRRK2 Missense_Mutation p.L839P 0.10 deleterious(0) probably_damaging(0.999) TCGA-39-5021-01 12 42858718 42858718 C A PRICKLE1 Missense_Mutation p.R373L 0.14 tolerated(0.94) benign(0.241) TCGA-39-5021-01 12 48387245 48387245 G A COL2A1 Missense_Mutation p.P322L 0.23 unknown(0) TCGA-39-5021-01 12 49169144 49169144 C A ADCY6 Missense_Mutation p.R641L 0.20 deleterious(0.03) probably_damaging(0.991) TCGA-39-5021-01 12 5154720 5154720 C A KCNA5 Missense_Mutation p.D469E 0.12 tolerated(0.18) possibly_damaging(0.828) TCGA-39-5021-01 12 5603793 5603793 G A NTF3 Missense_Mutation p.R151Q 0.03 deleterious(0) possibly_damaging(0.885) TCGA-39-5021-01 12 56355204 56355204 C T PMEL Silent p.L77L 0.12 TCGA-39-5021-01 12 65564642 65564642 C T LEMD3 Silent p.L422L 0.22 TCGA-39-5021-01 12 6976727 6976727 C G TPI1 Missense_Mutation p.S36R 0.47 tolerated_low_confidence(0.13) benign(0.016) TCGA-39-5021-01 12 9251320 9251320 G C A2M Silent p.L578L 0.39 TCGA-39-5021-01 12 93968892 93968892 C T SOCS2 Silent p.I178I 0.20 TCGA-39-5021-01 13 37573414 37573414 C T ALG5 Silent p.L8L 0.41 TCGA-39-5021-01 13 48881542 48881542 G T RB1 Missense_Mutation p.L88F 0.41 tolerated(0.4) benign(0.143) TCGA-39-5021-01 14 20019843 20019843 G T POTEM Missense_Mutation p.S126R 0.17 tolerated(0.12) benign(0.167) TCGA-39-5021-01 14 20389096 20389096 G T OR4K5 Nonsense_Mutation p.E111* 0.07 TCGA-39-5021-01 14 22555205 22555205 G C TRAV23DV6 Missense_Mutation p.G111R 0.38 tolerated(0.07) benign(0.33) TCGA-39-5021-01 14 50246318 50246318 A G KLHDC2 Silent p.K213K 0.44 TCGA-39-5021-01 14 65398968 65398968 T C CHURC1 3'UTR 0.22 TCGA-39-5021-01 15 23444061 23444061 C A AC100757.1 5'Flank 0.23 TCGA-39-5021-01 16 28944428 28944428 C A CD19 Silent p.L184L 0.18 TCGA-39-5021-01 16 28944429 28944429 A C CD19 Missense_Mutation p.S185R 0.19 tolerated(0.09) possibly_damaging(0.883) TCGA-39-5021-01 16 75263782 75263782 T C BCAR1 Missense_Mutation p.Y793C 0.16 deleterious(0) probably_damaging(1) TCGA-39-5021-01 17 10429113 10429113 G T MYH2 Missense_Mutation p.T1423K 0.38 deleterious(0) probably_damaging(0.95) TCGA-39-5021-01 17 15341276 15341276 C T CDRT4 Silent p.R90R 0.24 TCGA-39-5021-01 17 57733276 57733276 A T CLTC Missense_Mutation p.D286V 0.16 deleterious(0) probably_damaging(0.99) TCGA-39-5021-01 17 67215713 67215713 A T ABCA10 Missense_Mutation p.V168E 0.41 deleterious(0) possibly_damaging(0.648) TCGA-39-5021-01 17 73008861 73008861 G A ICT1 Missense_Mutation p.R27H 0.27 tolerated(0.25) benign(0.001) TCGA-39-5021-01 17 7578507 7578507 G C TP53 Missense_Mutation p.C141W 0.40 deleterious(0) probably_damaging(1) TCGA-39-5021-01 17 7793959 7793959 A G CHD3 Missense_Mutation p.Y154C 0.18 possibly_damaging(0.759) TCGA-39-5021-01 17 79914879 79914879 G T NOTUM Missense_Mutation p.A256D 0.53 tolerated(0.32) possibly_damaging(0.598) TCGA-39-5021-01 18 30092621 30092621 C A WBP11P1 RNA 0.28 TCGA-39-5021-01 18 44559910 44559910 C T TCEB3B Missense_Mutation p.A576T 0.34 tolerated(0.12) benign(0.371) TCGA-39-5021-01 18 74625777 74625778 AG T ZNF236 Frame_Shift_Del p.K993Ifs*28 0.19 TCGA-39-5021-01 18 77193660 77193660 C G NFATC1 Silent p.S423S 0.33 TCGA-39-5021-01 19 1051539 1051539 T C ABCA7 Silent p.P972P 0.21 TCGA-39-5021-01 19 11465571 11465571 C T CCDC159 3'UTR 0.19 TCGA-39-5021-01 19 13035919 13035919 C T FARSA Missense_Mutation p.G304D 0.24 deleterious(0.04) benign(0.239) TCGA-39-5021-01 19 14765947 14765947 G A EMR3 Missense_Mutation p.L142F 0.09 tolerated(0.06) benign(0.017) TCGA-39-5021-01 19 17922703 17922703 T C B3GNT3 Silent p.D297D 0.28 TCGA-39-5021-01 19 18499285 18499285 A C GDF15 Missense_Mutation p.H156P 0.32 tolerated(0.21) benign(0.002) TCGA-39-5021-01 19 22941130 22941130 A T ZNF99 Missense_Mutation p.H527Q 0.26 deleterious(0.01) benign(0.059) TCGA-39-5021-01 19 36353407 36353407 C A KIRREL2 Missense_Mutation p.T508N 0.21 tolerated(0.26) benign(0.091) TCGA-39-5021-01 19 37677356 37677356 C T ZNF585B Silent p.K361K 0.05 TCGA-39-5021-01 19 40902712 40902712 C A PRX Missense_Mutation p.R516L 0.23 deleterious(0.04) benign(0.433) TCGA-39-5021-01 19 49442786 49442786 G T DHDH Silent p.V149V 0.18 TCGA-39-5021-01 19 50909521 50909521 G T POLD1 Missense_Mutation p.G442V 0.29 deleterious(0) probably_damaging(0.994) TCGA-39-5021-01 19 54803248 54803248 G A LILRA3 Silent p.I143I 0.37 TCGA-39-5021-01 19 55450740 55450740 C A NLRP7 Nonsense_Mutation p.E483* 0.17 TCGA-39-5021-01 19 9063785 9063785 G A MUC16 Silent p.T7887T 0.27 TCGA-39-5021-01 1 15545933 15545933 G A TMEM51 Silent p.P152P 0.15 TCGA-39-5021-01 1 156694041 156694041 T A ISG20L2 Missense_Mutation p.T283S 0.17 deleterious(0) probably_damaging(0.999) TCGA-39-5021-01 1 157494301 157494301 C A FCRL5 Missense_Mutation p.Q669H 0.19 deleterious(0) probably_damaging(0.997) TCGA-39-5021-01 1 158735878 158735878 C A OR6N1 Missense_Mutation p.D199Y 0.21 deleterious(0.03) probably_damaging(0.997) TCGA-39-5021-01 1 169510281 169510281 G T F5 Silent p.S1349S 0.21 TCGA-39-5021-01 1 172628635 172628635 C A FASLG Silent p.G98G 0.23 TCGA-39-5021-01 1 176659665 176659665 G T PAPPA2 Intron 0.10 TCGA-39-5021-01 1 176709279 176709279 G T PAPPA2 Silent p.S1366S 0.23 TCGA-39-5021-01 1 176738770 176738770 G T PAPPA2 Missense_Mutation p.G1451W 0.19 deleterious(0) probably_damaging(1) TCGA-39-5021-01 1 176903472 176903472 G A ASTN1 Silent p.L829L 0.17 TCGA-39-5021-01 1 179019460 179019460 G A FAM20B Missense_Mutation p.D142N 0.27 deleterious(0.01) probably_damaging(0.928) TCGA-39-5021-01 1 179398712 179398712 G C AXDND1 Missense_Mutation p.W430C 0.15 deleterious(0) possibly_damaging(0.893) TCGA-39-5021-01 1 207071110 207071110 G A IL24 5'UTR 0.10 TCGA-39-5021-01 1 224009057 224009057 C A TP53BP2 Missense_Mutation p.V14L 0.19 deleterious(0) probably_damaging(0.994) TCGA-39-5021-01 1 226822451 226822451 C G ITPKB Missense_Mutation p.R921P 0.19 deleterious(0) probably_damaging(1) TCGA-39-5021-01 1 228335335 228335335 G C GUK1 Missense_Mutation p.R158P 0.23 deleterious(0) probably_damaging(1) TCGA-39-5021-01 1 237794791 237794791 G T RYR2 Nonsense_Mutation p.E2169* 0.18 TCGA-39-5021-01 1 237801654 237801654 C T RYR2 Intron 0.27 TCGA-39-5021-01 1 246498753 246498753 C T SMYD3 Silent p.K84K 0.14 TCGA-39-5021-01 1 247695727 247695727 G A OR2C3 Silent p.F29F 0.32 TCGA-39-5021-01 1 62330011 62330011 C A INADL Missense_Mutation p.S847R 0.06 tolerated(0.07) benign(0.365) TCGA-39-5021-01 1 70700378 70700378 G T SRSF11 Splice_Site p.X150_splice 0.22 TCGA-39-5021-01 1 74507364 74507364 G T LRRIQ3 Silent p.L417L 0.12 TCGA-39-5021-01 1 94480239 94480239 C T ABCA4 Missense_Mutation p.V1774I 0.18 tolerated(1) benign(0.181) TCGA-39-5021-01 20 18529263 18529263 A T SEC23B Missense_Mutation p.H585L 0.19 deleterious(0) probably_damaging(0.978) TCGA-39-5021-01 20 20257983 20257983 G - C20orf26 Frame_Shift_Del p.A893Pfs*70 0.32 TCGA-39-5021-01 20 32005618 32005618 C - SNTA1 Frame_Shift_Del p.G203Afs*15 0.35 TCGA-39-5021-01 20 33584464 33584464 C A MYH7B Silent p.R1099R 0.25 TCGA-39-5021-01 20 36841984 36841984 C G KIAA1755 Silent p.V1021V 0.26 TCGA-39-5021-01 20 47838119 47838119 G A DDX27 Missense_Mutation p.S106N 0.30 tolerated(0.43) benign(0.002) TCGA-39-5021-01 20 50701752 50701752 C A ZFP64 Missense_Mutation p.D428Y 0.30 deleterious(0.01) probably_damaging(0.995) TCGA-39-5021-01 21 15882692 15882692 C A SAMSN1 Missense_Mutation p.R235L 0.24 deleterious(0) probably_damaging(0.987) TCGA-39-5021-01 21 40186828 40186828 G A ETS2 Missense_Mutation p.G143D 0.24 tolerated(0.13) probably_damaging(0.979) TCGA-39-5021-01 21 46047531 46047531 C T KRTAP10-9 Missense_Mutation p.P148L 0.16 deleterious(0.03) unknown(0) TCGA-39-5021-01 21 46313372 46313372 T A ITGB2 Missense_Mutation p.T391S 0.24 tolerated(1) benign(0.001) TCGA-39-5021-01 22 16256591 16256591 T C POTEH 3'UTR 0.05 TCGA-39-5021-01 22 30682934 30682934 G T GATSL3 Missense_Mutation p.P170H 0.45 tolerated(0.06) benign(0.401) TCGA-39-5021-01 22 39884019 39884019 G T MGAT3 Missense_Mutation p.V223L 0.44 deleterious(0.04) benign(0.084) TCGA-39-5021-01 2 111598951 111598951 G C ACOXL Missense_Mutation p.G253R 0.12 deleterious(0) probably_damaging(1) TCGA-39-5021-01 2 116593772 116593772 G T DPP10 Missense_Mutation p.D668Y 0.18 tolerated(0.11) benign(0.424) TCGA-39-5021-01 2 120194538 120194538 C T TMEM37 Missense_Mutation p.T32M 0.17 tolerated(0.06) benign(0.033) TCGA-39-5021-01 2 131976176 131976176 C T POTEE Silent p.H67H 0.19 TCGA-39-5021-01 2 132288288 132288288 G T CCDC74A Missense_Mutation p.R144S 0.10 tolerated(0.3) benign(0.005) TCGA-39-5021-01 2 163059422 163059422 A G FAP Missense_Mutation p.W395R 0.14 deleterious(0) probably_damaging(1) TCGA-39-5021-01 2 168099528 168099528 C A XIRP2 Silent p.A542A 0.21 TCGA-39-5021-01 2 168099529 168099529 C A XIRP2 Silent p.R543R 0.21 TCGA-39-5021-01 2 179517248 179517248 C T TTN Missense_Mutation p.V13022I 0.13 TCGA-39-5021-01 2 179640465 179640465 G T TTN Silent p.T2042T 0.16 TCGA-39-5021-01 2 179640466 179640466 G T TTN Missense_Mutation p.T2042N 0.16 TCGA-39-5021-01 2 207175031 207175031 C A ZDBF2 Missense_Mutation p.P1927T 0.22 tolerated(0.29) benign(0.005) TCGA-39-5021-01 2 207175032 207175032 C A ZDBF2 Missense_Mutation p.P1927H 0.21 tolerated(0.46) benign(0.094) TCGA-39-5021-01 2 225346608 225346608 C T CUL3 Splice_Site p.X677_splice 0.16 TCGA-39-5021-01 2 225376227 225376227 C T CUL3 Missense_Mutation p.E243K 0.14 deleterious(0) probably_damaging(0.973) TCGA-39-5021-01 2 242795003 242795003 C T PDCD1 Missense_Mutation p.R69H 0.19 deleterious(0) probably_damaging(0.999) TCGA-39-5021-01 2 27596776 27596776 A T SNX17 Missense_Mutation p.S124C 0.15 tolerated(0.11) benign(0.013) TCGA-39-5021-01 2 28741349 28741349 C T PLB1 Missense_Mutation p.P45L 0.31 tolerated(0.07) benign(0.006) TCGA-39-5021-01 2 31472300 31472300 G A EHD3 Silent p.G156G 0.20 TCGA-39-5021-01 2 33590482 33590482 G T LTBP1 Silent p.V1541V 0.14 TCGA-39-5021-01 2 74749797 74749797 G A DQX1 Missense_Mutation p.P469S 0.20 deleterious(0.01) probably_damaging(0.943) TCGA-39-5021-01 2 85780514 85780514 G A GGCX Silent p.P332P 0.15 TCGA-39-5021-01 2 98846666 98846666 C A VWA3B Missense_Mutation p.H768Q 0.15 tolerated(0.08) benign(0.31) TCGA-39-5021-01 3 113761550 113761550 C A KIAA1407 Missense_Mutation p.D139Y 0.11 deleterious(0.01) probably_damaging(0.994) TCGA-39-5021-01 3 119133421 119133421 T G ARHGAP31 Missense_Mutation p.V882G 0.23 deleterious(0) benign(0.282) TCGA-39-5021-01 3 124209608 124209608 G T KALRN Silent p.P1486P 0.17 TCGA-39-5021-01 3 167246900 167246900 C T WDR49 Silent p.K430K 0.56 TCGA-39-5021-01 3 184586825 184586825 G T VPS8 Splice_Site p.X533_splice 0.62 TCGA-39-5021-01 3 187442826 187442826 T C BCL6 Missense_Mutation p.E627G 0.27 deleterious(0) probably_damaging(0.982) TCGA-39-5021-01 4 123336548 123336548 A G ADAD1 Missense_Mutation p.S422G 0.22 tolerated(0.05) benign(0.003) TCGA-39-5021-01 4 123663366 123663366 G T BBS12 Missense_Mutation p.V107F 0.23 deleterious(0) probably_damaging(0.959) TCGA-39-5021-01 4 123663906 123663906 G T BBS12 Nonsense_Mutation p.E287* 0.24 TCGA-39-5021-01 4 134071494 134071494 A T PCDH10 Missense_Mutation p.N67Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-39-5021-01 4 141560481 141560481 T A TBC1D9 Intron 0.41 TCGA-39-5021-01 4 15779985 15779985 G T CD38 5'UTR 0.25 TCGA-39-5021-01 4 164393523 164393523 G T TKTL2 Missense_Mutation p.A455D 0.31 deleterious(0) probably_damaging(0.99) TCGA-39-5021-01 4 178881955 178881955 G A LINC01098 5'UTR 0.23 TCGA-39-5021-01 4 6623085 6623085 A G MAN2B2 3'UTR 0.09 TCGA-39-5021-01 5 118968463 118968463 G C FAM170A Missense_Mutation p.D31H 0.31 deleterious(0.03) probably_damaging(0.942) TCGA-39-5021-01 5 140557741 140557741 C A PCDHB8 Silent p.G42G 0.09 TCGA-39-5021-01 5 160097670 160097670 C G ATP10B Missense_Mutation p.E159Q 0.29 tolerated(0.16) benign(0.052) TCGA-39-5021-01 5 71493130 71493130 G A MAP1B Silent p.K1316K 0.20 TCGA-39-5021-01 6 118887060 118887060 T C CEP85L Missense_Mutation p.I221V 0.06 tolerated(0.53) benign(0.001) TCGA-39-5021-01 6 167786681 167786681 G A TCP10 Silent p.P319P 0.15 TCGA-39-5021-01 6 34507100 34507100 C - SPDEF Frame_Shift_Del p.W252Cfs*49 0.27 TCGA-39-5021-01 6 40399704 40399704 G C LRFN2 Missense_Mutation p.S383R 0.20 tolerated(0.43) possibly_damaging(0.514) TCGA-39-5021-01 6 66204811 66204811 G C EYS Missense_Mutation p.L165V 0.26 deleterious(0.04) probably_damaging(0.953) TCGA-39-5021-01 6 76715078 76715078 T G IMPG1 Missense_Mutation p.D354A 0.23 deleterious(0.04) benign(0.063) TCGA-39-5021-01 6 86181076 86181076 C A NT5E Silent p.L228L 0.20 TCGA-39-5021-01 6 88331094 88331094 A G ORC3 Missense_Mutation p.Y337C 0.05 deleterious(0) benign(0.087) TCGA-39-5021-01 6 96053766 96053766 A T MANEA Missense_Mutation p.N292Y 0.26 deleterious(0.01) probably_damaging(0.931) TCGA-39-5021-01 7 122635075 122635075 T C TAS2R16 Missense_Mutation p.K205R 0.24 tolerated(1) benign(0.018) TCGA-39-5021-01 7 149502517 149502517 C T SSPO RNA 0.16 TCGA-39-5021-01 7 31126093 31126093 G T ADCYAP1R1 Silent p.L255L 0.15 TCGA-39-5021-01 7 31793118 31793118 G A PDE1C Silent p.S730S 0.20 TCGA-39-5021-01 7 39125632 39125632 G T POU6F2 Splice_Site p.X64_splice 0.22 TCGA-39-5021-01 7 40102656 40102656 A G CDK13 Missense_Mutation p.I913V 0.28 tolerated(0.05) benign(0.326) TCGA-39-5021-01 7 44286779 44286779 C A CAMK2B Missense_Mutation p.Q118H 0.16 tolerated_low_confidence(0.31) probably_damaging(0.935) TCGA-39-5021-01 7 77569641 77569641 G A PHTF2 Intron 0.04 TCGA-39-5021-01 7 8095089 8095089 A G GLCCI1 Silent p.L241L 0.16 TCGA-39-5021-01 7 88424128 88424128 C A C7orf62 Missense_Mutation p.K43N 0.15 deleterious(0.03) probably_damaging(0.997) TCGA-39-5021-01 7 88956718 88956718 G T ZNF804B Missense_Mutation p.D104Y 0.22 deleterious(0) probably_damaging(0.975) TCGA-39-5021-01 8 10468360 10468360 G T RP1L1 Missense_Mutation p.T1083K 0.16 probably_damaging(0.949) TCGA-39-5021-01 8 104922413 104922413 C A RIMS2 Missense_Mutation p.A559E 0.22 tolerated_low_confidence(0.2) benign(0.06) TCGA-39-5021-01 8 113563039 113563039 T A CSMD3 Silent p.P1475P 0.25 TCGA-39-5021-01 8 3000083 3000083 G T CSMD1 Missense_Mutation p.L2049I 0.10 benign(0.007) TCGA-39-5021-01 8 35648048 35648048 C T UNC5D Silent p.A943A 0.11 TCGA-39-5021-01 8 42611340 42611340 C A CHRNA6 Silent p.T334T 0.08 TCGA-39-5021-01 8 66525497 66525497 T C ARMC1 Missense_Mutation p.I149M 0.26 deleterious(0.03) possibly_damaging(0.786) TCGA-39-5021-01 8 80677843 80677843 C A HEY1 Silent p.R169R 0.11 TCGA-39-5021-01 8 80677844 80677844 C A HEY1 Missense_Mutation p.R169L 0.11 tolerated(0.17) probably_damaging(0.999) TCGA-39-5021-01 8 80677875 80677875 C T HEY1 Missense_Mutation p.V159I 0.09 deleterious(0.01) possibly_damaging(0.886) TCGA-39-5021-01 9 119976866 119976866 G C ASTN2 Silent p.P262P 0.23 TCGA-39-5021-01 9 27168569 27168569 G C TEK Missense_Mutation p.L147F 0.28 tolerated(0.18) benign(0.051) TCGA-39-5021-01 9 34996318 34996318 T C DNAJB5 Missense_Mutation p.F204L 0.14 deleterious(0.05) benign(0.022) TCGA-39-5021-01 9 79917868 79917868 G T VPS13A Missense_Mutation p.D1284Y 0.24 deleterious(0) possibly_damaging(0.707) TCGA-39-5021-01 9 88903620 88903620 G A ZCCHC6 Missense_Mutation p.S1487L 0.22 deleterious_low_confidence(0.01) benign(0.038) TCGA-39-5021-01 X 12734276 12734276 A G FRMPD4 Silent p.Q566Q 0.32 TCGA-39-5021-01 X 128885770 128885770 T C XPNPEP2 Silent p.Y263Y 0.13 TCGA-39-5021-01 X 135303015 135303015 G T MAP7D3 Missense_Mutation p.R799S 0.44 tolerated(0.53) benign(0.024) TCGA-39-5021-01 X 135431938 135431938 A C GPR112 Missense_Mutation p.N2025H 0.38 deleterious(0) possibly_damaging(0.707) TCGA-39-5021-01 X 138619203 138619203 G C F9 Silent p.L41L 0.08 TCGA-39-5021-01 X 19031915 19031915 G C GPR64 Missense_Mutation p.P330A 0.35 deleterious(0.04) benign(0.009) TCGA-39-5021-01 X 86919919 86919919 G T KLHL4 Missense_Mutation p.R694I 0.42 tolerated(0.06) benign(0.091) TCGA-39-5022-01 10 126523297 126523297 A G FAM175B Silent p.Q335Q 0.17 TCGA-39-5022-01 10 129902207 129902207 G C MKI67 Missense_Mutation p.H2633D 0.05 tolerated(0.7) benign(0.066) TCGA-39-5022-01 10 24783456 24783456 G A KIAA1217 Silent p.Q569Q 0.05 TCGA-39-5022-01 10 26589951 26589951 T C GAD2 3'UTR 0.11 TCGA-39-5022-01 10 30900858 30900858 C T LYZL2 3'UTR 0.05 TCGA-39-5022-01 10 30915842 30915842 C A LYZL2 Missense_Mutation p.M47I 0.05 deleterious(0.02) probably_damaging(0.971) TCGA-39-5022-01 10 43695154 43695154 C G RASGEF1A Silent p.L273L 0.12 TCGA-39-5022-01 10 63519826 63519826 G C C10orf107 Missense_Mutation p.E100Q 0.12 deleterious(0) probably_damaging(0.994) TCGA-39-5022-01 10 70967669 70967669 G C SUPV3L1 Missense_Mutation p.D633H 0.07 deleterious(0) probably_damaging(0.999) TCGA-39-5022-01 10 75184893 75184893 G A MSS51 Missense_Mutation p.R376C 0.08 deleterious(0) benign(0.011) TCGA-39-5022-01 10 85956342 85956342 G C CDHR1 Missense_Mutation p.R78T 0.05 tolerated(0.12) benign(0.395) TCGA-39-5022-01 10 98105744 98105744 C G OPALIN Missense_Mutation p.R127T 0.06 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-39-5022-01 11 108348418 108348418 C G KDELC2 Missense_Mutation p.K438N 0.10 deleterious(0.05) benign(0.219) TCGA-39-5022-01 11 110486303 110486303 C T ARHGAP20 Silent p.K173K 0.15 TCGA-39-5022-01 11 117066728 117066728 G C SIDT2 Silent p.L815L 0.08 TCGA-39-5022-01 11 119030980 119030980 C T ABCG4 Missense_Mutation p.T494M 0.15 deleterious(0) probably_damaging(0.909) TCGA-39-5022-01 11 120745935 120745935 A G GRIK4 Missense_Mutation p.R383G 0.13 tolerated(0.09) benign(0.001) TCGA-39-5022-01 11 1955618 1955618 G A TNNT3 Silent p.L141L 0.06 TCGA-39-5022-01 11 22364891 22364891 G T SLC17A6 Silent p.A146A 0.16 TCGA-39-5022-01 11 2424480 2424480 C G TSSC4 Missense_Mutation p.S206C 0.04 deleterious(0) probably_damaging(0.999) TCGA-39-5022-01 11 55418443 55418443 G C OR4S2 Missense_Mutation p.E22Q 0.10 tolerated(1) benign(0.01) TCGA-39-5022-01 11 607998 607998 G A PHRF1 Missense_Mutation p.E847K 0.06 deleterious(0) probably_damaging(0.998) TCGA-39-5022-01 11 62554633 62554633 C G TAF6L Missense_Mutation p.F578L 0.14 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-39-5022-01 11 71668300 71668300 G C RNF121 Missense_Mutation p.E31Q 0.14 tolerated(0.05) benign(0.289) TCGA-39-5022-01 11 73801934 73801934 C G C2CD3 Missense_Mutation p.E1189Q 0.13 tolerated(0.09) benign(0.061) TCGA-39-5022-01 12 104033905 104033905 A T STAB2 Missense_Mutation p.H304L 0.07 tolerated(0.07) possibly_damaging(0.548) TCGA-39-5022-01 12 11546167 11546167 T A PRB2 Missense_Mutation p.K282M 0.02 deleterious(0.01) unknown(0) TCGA-39-5022-01 12 12037425 12037425 C T ETV6 Silent p.S352S 0.06 TCGA-39-5022-01 12 21679392 21679392 G C C12orf39 5'UTR 0.10 TCGA-39-5022-01 12 2800327 2800327 G C CACNA1C Missense_Mutation p.E2175Q 0.06 deleterious_low_confidence(0.02) benign(0.104) TCGA-39-5022-01 12 6078430 6078430 G A VWF Missense_Mutation p.S2559L 0.08 tolerated(1) benign(0.001) TCGA-39-5022-01 12 6499369 6499369 C G LTBR Missense_Mutation p.S298C 0.10 deleterious(0.01) possibly_damaging(0.885) TCGA-39-5022-01 12 75807396 75807396 T C GLIPR1L2 Missense_Mutation p.Y167H 0.05 deleterious(0.01) probably_damaging(1) TCGA-39-5022-01 12 78574810 78574810 G A NAV3 Missense_Mutation p.E1871K 0.10 deleterious(0.03) benign(0.012) TCGA-39-5022-01 12 99077009 99077009 A G APAF1 Missense_Mutation p.H712R 0.20 tolerated(0.65) benign(0.002) TCGA-39-5022-01 13 79979847 79979847 G C RBM26 Silent p.L21L 0.08 TCGA-39-5022-01 14 102515856 102515856 G C DYNC1H1 Missense_Mutation p.E4484D 0.05 benign(0.033) TCGA-39-5022-01 14 104571026 104571026 C T ASPG Missense_Mutation p.S335L 0.17 deleterious(0.02) benign(0.141) TCGA-39-5022-01 14 105412098 105412098 C G AHNAK2 Missense_Mutation p.Q3230H 0.12 possibly_damaging(0.808) TCGA-39-5022-01 14 106066464 106066464 T C IGHE Missense_Mutation p.H409R 0.16 deleterious(0) probably_damaging(0.999) TCGA-39-5022-01 14 107218845 107218845 C A IGHV3-74 Missense_Mutation p.G61V 0.17 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-39-5022-01 14 20483014 20483014 C A OR4K14 Missense_Mutation p.M113I 0.13 tolerated(0.15) benign(0.272) TCGA-39-5022-01 14 54417514 54417514 A C BMP4 Missense_Mutation p.S155A 0.14 tolerated(0.72) benign(0.041) TCGA-39-5022-01 14 58831452 58831452 C G ARID4A Missense_Mutation p.S882C 0.05 deleterious_low_confidence(0.01) benign(0) TCGA-39-5022-01 14 65246548 65246548 G A SPTB Silent p.I1456I 0.04 TCGA-39-5022-01 14 75514843 75514843 C A MLH3 Nonsense_Mutation p.E506* 0.04 TCGA-39-5022-01 14 76928997 76928997 G A ESRRB Silent p.L169L 0.04 TCGA-39-5022-01 14 77795519 77795519 G C GSTZ1 Missense_Mutation p.Q132H 0.06 tolerated(0.27) benign(0.009) TCGA-39-5022-01 15 35045123 35045123 C A GJD2 Silent p.L174L 0.11 TCGA-39-5022-01 15 40661460 40661460 G A DISP2 Silent p.L1049L 0.04 TCGA-39-5022-01 15 44890849 44890849 C G SPG11 Missense_Mutation p.S1291T 0.10 tolerated(0.31) benign(0.034) TCGA-39-5022-01 15 48829910 48829910 T C FBN1 Missense_Mutation p.T212A 0.11 probably_damaging(0.996) TCGA-39-5022-01 15 52357078 52357078 C G MAPK6 Missense_Mutation p.H683D 0.10 tolerated_low_confidence(0.96) benign(0) TCGA-39-5022-01 15 74166053 74166053 G A TBC1D21 Translation_Start_Site p.M1? 0.11 tolerated_low_confidence(0.08) benign(0.026) TCGA-39-5022-01 16 18861663 18861663 C T SMG1 Missense_Mutation p.E1727K 0.05 deleterious(0.05) benign(0.054) TCGA-39-5022-01 16 21033341 21033341 G C DNAH3 Missense_Mutation p.P1910A 0.09 tolerated(0.09) benign(0.008) TCGA-39-5022-01 16 2806571 2806571 G A SRRM2 Missense_Mutation p.R69Q 0.07 unknown(0) TCGA-39-5022-01 16 28497729 28497729 C T CLN3 Missense_Mutation p.G206S 0.11 deleterious(0.01) probably_damaging(1) TCGA-39-5022-01 16 3613598 3613598 G A NLRC3 Missense_Mutation p.S494L 0.19 tolerated(0.78) benign(0.002) TCGA-39-5022-01 16 48250159 48250159 C G ABCC11 Missense_Mutation p.E273Q 0.03 deleterious(0) probably_damaging(0.993) TCGA-39-5022-01 16 54966367 54966367 G A IRX5 Intron 0.12 TCGA-39-5022-01 16 72992324 72992324 C G ZFHX3 Missense_Mutation p.S574T 0.12 benign(0.076) TCGA-39-5022-01 16 81973631 81973631 C G PLCG2 Missense_Mutation p.H1150D 0.04 deleterious(0.01) benign(0.42) TCGA-39-5022-01 17 10307706 10307706 C G MYH8 Missense_Mutation p.E877Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-39-5022-01 17 18682174 18682174 A G FBXW10 Missense_Mutation p.I908V 0.08 deleterious(0.04) benign(0.034) TCGA-39-5022-01 17 27182147 27182147 C A ERAL1 Missense_Mutation p.P32H 0.13 tolerated_low_confidence(0.55) benign(0.268) TCGA-39-5022-01 17 39553742 39553742 G C KRT31 Missense_Mutation p.S17C 0.12 tolerated(0.22) benign(0.002) TCGA-39-5022-01 17 39739351 39739351 C G KRT14 Missense_Mutation p.R439T 0.06 tolerated(0.23) benign(0.065) TCGA-39-5022-01 17 41122314 41122314 C T PTGES3L Missense_Mutation p.D147N 0.09 tolerated(0.06) possibly_damaging(0.728) TCGA-39-5022-01 17 47688717 47688717 C A SPOP Nonsense_Mutation p.E195* 0.17 TCGA-39-5022-01 17 57842496 57842496 G C VMP1 Missense_Mutation p.M193I 0.33 deleterious(0.01) possibly_damaging(0.748) TCGA-39-5022-01 17 65156379 65156379 G C HELZ Silent p.L725L 0.07 TCGA-39-5022-01 17 65184632 65184632 G A HELZ Missense_Mutation p.S322L 0.03 tolerated(0.49) benign(0.005) TCGA-39-5022-01 17 6659337 6659337 C T XAF1 5'UTR 0.12 TCGA-39-5022-01 17 6718550 6718550 G A TEKT1 Silent p.I187I 0.09 TCGA-39-5022-01 17 73489113 73489113 C G KIAA0195 Silent p.L672L 0.21 TCGA-39-5022-01 17 7579535 7579551 TCAATATCGTCCGGGGA - TP53 Frame_Shift_Del p.S46Tfs*5 0.14 TCGA-39-5022-01 17 77075610 77075610 C G ENGASE Missense_Mutation p.F152L 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-39-5022-01 17 9923193 9923193 G A GAS7 Missense_Mutation p.P69S 0.16 tolerated(0.77) benign(0.002) TCGA-39-5022-01 18 13884528 13884528 G T MC2R 3'UTR 0.18 TCGA-39-5022-01 18 44560278 44560278 G A TCEB3B Missense_Mutation p.T453M 0.11 deleterious(0) probably_damaging(0.997) TCGA-39-5022-01 18 47323859 47323859 G C ACAA2 Missense_Mutation p.Q97E 0.04 tolerated(0.2) benign(0.268) TCGA-39-5022-01 18 580595 580595 G A CETN1 Missense_Mutation p.E63K 0.10 deleterious(0) probably_damaging(0.932) TCGA-39-5022-01 18 61325788 61325788 C G SERPINB3 Missense_Mutation p.S143T 0.07 tolerated(0.17) benign(0.156) TCGA-39-5022-01 18 66504390 66504390 G T CCDC102B Silent p.A130A 0.17 TCGA-39-5022-01 19 10073506 10073506 G C COL5A3 Missense_Mutation p.R1614G 0.09 unknown(0) TCGA-39-5022-01 19 1453249 1453249 G A APC2 Missense_Mutation p.V49I 0.33 probably_damaging(0.927) TCGA-39-5022-01 19 19626179 19626179 C G TSSK6 Missense_Mutation p.E20Q 0.05 tolerated(0.08) possibly_damaging(0.669) TCGA-39-5022-01 19 19905854 19905854 C G ZNF506 Missense_Mutation p.G281A 0.05 deleterious(0.02) possibly_damaging(0.727) TCGA-39-5022-01 19 23543988 23543988 C A ZNF91 Missense_Mutation p.G598V 0.12 deleterious(0) probably_damaging(0.987) TCGA-39-5022-01 19 37853479 37853479 T C HKR1 Missense_Mutation p.L261P 0.08 deleterious(0.03) probably_damaging(0.921) TCGA-39-5022-01 19 42383185 42383185 G A CD79A Missense_Mutation p.V69I 0.18 tolerated(0.95) benign(0.014) TCGA-39-5022-01 19 42492696 42492696 C G ATP1A3 Missense_Mutation p.D22H 0.07 tolerated(0.12) benign(0.121) TCGA-39-5022-01 19 51917069 51917069 A C SIGLEC10 Missense_Mutation p.I573S 0.11 tolerated(0.06) benign(0.065) TCGA-39-5022-01 19 52149622 52149622 C T SIGLEC14 Silent p.L103L 0.05 TCGA-39-5022-01 19 52618120 52618120 C G ZNF616 Missense_Mutation p.R766T 0.04 deleterious(0.05) benign(0.001) TCGA-39-5022-01 19 54867877 54867877 C A LAIR1 Splice_Site p.X209_splice 0.21 TCGA-39-5022-01 19 57326512 57326512 C A PEG3 Missense_Mutation p.D1100Y 0.08 deleterious(0) possibly_damaging(0.88) TCGA-39-5022-01 19 57326513 57326513 C A PEG3 Missense_Mutation p.K1099N 0.09 tolerated(0.11) benign(0.131) TCGA-39-5022-01 19 9072935 9072935 G T MUC16 Silent p.T4837T 0.13 TCGA-39-5022-01 1 117087219 117087219 G A CD58 Silent p.I26I 0.16 TCGA-39-5022-01 1 150048382 150048382 G C VPS45 Missense_Mutation p.E121Q 0.03 deleterious(0.04) probably_damaging(0.919) TCGA-39-5022-01 1 151196730 151196730 G T PIP5K1A Missense_Mutation p.G32V 0.04 tolerated_low_confidence(0.14) possibly_damaging(0.642) TCGA-39-5022-01 1 154542077 154542077 C T CHRNB2 Silent p.I68I 0.11 TCGA-39-5022-01 1 158747222 158747222 G A OR6N2 Silent p.F68F 0.04 TCGA-39-5022-01 1 179112101 179112101 C T ABL2 Intron 0.06 TCGA-39-5022-01 1 182551334 182551334 C G RNASEL Silent p.L542L 0.03 TCGA-39-5022-01 1 19168341 19168341 A T TAS1R2 Silent p.P491P 0.12 TCGA-39-5022-01 1 207196391 207196391 C G C1orf116 Missense_Mutation p.E240Q 0.03 tolerated(0.16) benign(0.024) TCGA-39-5022-01 1 207644397 207644397 T G CR2 Missense_Mutation p.F486L 0.03 tolerated(0.29) benign(0.017) TCGA-39-5022-01 1 222828095 222828095 C T MIA3 Silent p.L1523L 0.05 TCGA-39-5022-01 1 237886440 237886440 G A RYR2 Missense_Mutation p.A3523T 0.20 benign(0.146) TCGA-39-5022-01 1 248263470 248263470 C T OR2L13 Missense_Mutation p.R265C 0.24 deleterious(0.02) benign(0.064) TCGA-39-5022-01 1 248616175 248616175 G T OR2T2 Missense_Mutation p.G26V 0.13 tolerated(0.57) benign(0.422) TCGA-39-5022-01 1 248616176 248616176 G T OR2T2 Silent p.G26G 0.13 TCGA-39-5022-01 1 27094437 27094437 C G ARID1A Missense_Mutation p.L1049V 0.03 unknown(0) TCGA-39-5022-01 1 27675619 27675619 G C SYTL1 Missense_Mutation p.E170Q 0.05 tolerated(0.4) benign(0.016) TCGA-39-5022-01 1 27877043 27877043 C G AHDC1 Silent p.R528R 0.05 TCGA-39-5022-01 1 34329862 34329862 A G HMGB4 Missense_Mutation p.R24G 0.08 deleterious(0.02) possibly_damaging(0.735) TCGA-39-5022-01 1 40363021 40363021 G C MYCL 3'UTR 0.05 TCGA-39-5022-01 1 40881009 40881009 C G SMAP2 Missense_Mutation p.L213V 0.05 deleterious(0.01) probably_damaging(0.978) TCGA-39-5022-01 1 52940773 52940775 CTA TT ZCCHC11 Nonsense_Mutation p.L819* 0.13 TCGA-39-5022-01 1 53459225 53459225 G T SCP2 Intron 0.05 TCGA-39-5022-01 1 65878757 65878757 T C DNAJC6 3'UTR 0.23 TCGA-39-5022-01 1 75716933 75716933 G A SLC44A5 Missense_Mutation p.P103S 0.05 tolerated(0.13) possibly_damaging(0.45) TCGA-39-5022-01 1 76779647 76779647 G T ST6GALNAC3 Missense_Mutation p.R59L 0.06 benign(0.23) TCGA-39-5022-01 1 94049605 94049605 C G BCAR3 Missense_Mutation p.A335P 0.05 tolerated(0.1) benign(0.059) TCGA-39-5022-01 20 10602001 10602001 G C SLX4IP Missense_Mutation p.E149Q 0.06 tolerated(0.07) possibly_damaging(0.876) TCGA-39-5022-01 20 17207870 17207870 C G PCSK2 5'UTR 0.12 TCGA-39-5022-01 20 31590668 31590668 C T SUN5 Missense_Mutation p.M45I 0.08 tolerated_low_confidence(0.45) benign(0.023) TCGA-39-5022-01 20 31814288 31814288 G C BPIFA3 Missense_Mutation p.E205Q 0.07 tolerated(0.47) probably_damaging(0.993) TCGA-39-5022-01 20 32295600 32295600 G T PXMP4 Missense_Mutation p.S184Y 0.11 deleterious(0) probably_damaging(0.928) TCGA-39-5022-01 20 32336822 32336822 A T ZNF341 Missense_Mutation p.M145L 0.15 tolerated(0.06) possibly_damaging(0.775) TCGA-39-5022-01 20 334113 334113 C T NRSN2 Missense_Mutation p.P150L 0.07 tolerated(0.63) benign(0.005) TCGA-39-5022-01 20 33596469 33596469 G A TRPC4AP Silent p.F531F 0.06 TCGA-39-5022-01 20 35929762 35929762 C G MANBAL Missense_Mutation p.F32L 0.04 deleterious(0.04) probably_damaging(0.992) TCGA-39-5022-01 20 61143831 61143831 G C C20orf166 5'Flank 0.07 TCGA-39-5022-01 21 15561661 15561661 C A LIPI Missense_Mutation p.E63D 0.10 tolerated(0.23) benign(0.017) TCGA-39-5022-01 21 16337172 16337172 C T NRIP1 Silent p.T1114T 0.07 TCGA-39-5022-01 21 43411868 43411868 C A ZBTB21 Missense_Mutation p.E779D 0.12 deleterious(0.01) benign(0.077) TCGA-39-5022-01 21 43411872 43411872 A C ZBTB21 Missense_Mutation p.L778R 0.12 tolerated(0.1) probably_damaging(0.999) TCGA-39-5022-01 22 42049691 42049691 C G XRCC6 Missense_Mutation p.P430A 0.06 tolerated(0.08) benign(0.129) TCGA-39-5022-01 2 10050867 10050867 G A TAF1B Missense_Mutation p.E320K 0.07 deleterious(0) probably_damaging(0.989) TCGA-39-5022-01 2 130951855 130951855 G A TUBA3E Missense_Mutation p.S187F 0.10 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-39-5022-01 2 152214240 152214240 C T TNFAIP6 Silent p.F20F 0.09 TCGA-39-5022-01 2 160755255 160755255 G C LY75-CD302 Missense_Mutation p.S137C 0.04 deleterious(0) probably_damaging(0.987) TCGA-39-5022-01 2 163393571 163393571 G A KCNH7 Silent p.N109N 0.07 TCGA-39-5022-01 2 170089935 170089935 G A LRP2 Missense_Mutation p.S1695L 0.12 benign(0) TCGA-39-5022-01 2 178098810 178098810 C G NFE2L2 Missense_Mutation p.E79Q 0.10 deleterious(0) probably_damaging(1) TCGA-39-5022-01 2 18768395 18768395 G C NT5C1B Silent p.P55P 0.14 TCGA-39-5022-01 2 202149860 202149860 C G CASP8 Nonsense_Mutation p.S434* 0.09 TCGA-39-5022-01 2 203141198 203141198 T A NOP58 Intron 0.14 TCGA-39-5022-01 2 204305815 204305815 G A RAPH1 Nonsense_Mutation p.Q700* 0.16 TCGA-39-5022-01 2 208841936 208841936 G A PLEKHM3 Missense_Mutation p.H329Y 0.08 tolerated(0.2) benign(0.001) TCGA-39-5022-01 2 209271605 209271605 C A PTH2R 5'UTR 0.25 TCGA-39-5022-01 2 218713332 218713332 G C TNS1 Missense_Mutation p.H511Q 0.21 tolerated(0.07) benign(0.011) TCGA-39-5022-01 2 27167566 27167566 G T DPYSL5 Missense_Mutation p.D495Y 0.22 deleterious(0) benign(0.216) TCGA-39-5022-01 2 27801100 27801100 A G C2orf16 Missense_Mutation p.H554R 0.05 tolerated(0.05) benign(0.007) TCGA-39-5022-01 2 61441575 61441575 C G USP34 Missense_Mutation p.E2768Q 0.20 deleterious(0) probably_damaging(0.998) TCGA-39-5022-01 2 69046260 69046260 C A ARHGAP25 Missense_Mutation p.P337T 0.06 deleterious(0.04) probably_damaging(0.935) TCGA-39-5022-01 3 121822377 121822377 T C CD86 Missense_Mutation p.I28T 0.10 tolerated(1) benign(0.124) TCGA-39-5022-01 3 124053267 124053267 G C KALRN Missense_Mutation p.E522D 0.04 tolerated(0.05) unknown(0) TCGA-39-5022-01 3 130285672 130285672 C T COL6A6 Missense_Mutation p.P470L 0.08 deleterious(0.04) probably_damaging(1) TCGA-39-5022-01 3 130300468 130300468 T C COL6A6 Missense_Mutation p.L1204P 0.08 deleterious(0) possibly_damaging(0.907) TCGA-39-5022-01 3 134084662 134084662 G A AMOTL2 Nonsense_Mutation p.Q426* 0.07 TCGA-39-5022-01 3 151131013 151131013 C G MED12L Missense_Mutation p.S2041C 0.05 deleterious_low_confidence(0.01) probably_damaging(0.974) TCGA-39-5022-01 3 170198250 170198250 C T SLC7A14 Silent p.L607L 0.05 TCGA-39-5022-01 3 183439723 183439723 C G YEATS2 Missense_Mutation p.I112M 0.03 deleterious(0) possibly_damaging(0.786) TCGA-39-5022-01 3 183905220 183905220 G A ABCF3 Missense_Mutation p.E113K 0.31 tolerated(1) benign(0.002) TCGA-39-5022-01 3 183905691 183905691 G C ABCF3 Missense_Mutation p.K163N 0.39 tolerated(0.34) possibly_damaging(0.855) TCGA-39-5022-01 3 183906897 183906897 G A ABCF3 Silent p.R333R 0.27 TCGA-39-5022-01 3 183907652 183907652 G A ABCF3 Missense_Mutation p.D442N 0.33 deleterious(0.05) probably_damaging(0.914) TCGA-39-5022-01 3 44945440 44945440 T C TGM4 Missense_Mutation p.W346R 0.08 tolerated(0.05) probably_damaging(0.973) TCGA-39-5022-01 3 45152242 45152242 G A CDCP1 Silent p.L249L 0.06 TCGA-39-5022-01 3 46750623 46750623 G A TMIE Silent p.T73T 0.06 TCGA-39-5022-01 3 48602858 48602858 G A COL7A1 Missense_Mutation p.H2838Y 0.18 possibly_damaging(0.772) TCGA-39-5022-01 3 51392382 51392382 G C DOCK3 Missense_Mutation p.E1393Q 0.05 tolerated(0.13) benign(0.015) TCGA-39-5022-01 3 93733279 93733279 G T STX19 Missense_Mutation p.P279T 0.11 deleterious(0) probably_damaging(1) TCGA-39-5022-01 4 100057749 100057749 A T ADH4 Missense_Mutation p.S150R 0.14 deleterious(0) probably_damaging(1) TCGA-39-5022-01 4 11401378 11401378 C T HS3ST1 Silent p.E84E 0.13 TCGA-39-5022-01 4 126336234 126336234 T C FAT4 Missense_Mutation p.I2039T 0.11 possibly_damaging(0.689) TCGA-39-5022-01 4 141489037 141489037 A T UCP1 Missense_Mutation p.L74H 0.06 deleterious(0) probably_damaging(0.957) TCGA-39-5022-01 4 153896413 153896413 C T FHDC1 Missense_Mutation p.S657L 0.07 tolerated(0.27) benign(0.002) TCGA-39-5022-01 4 16510277 16510277 T C LDB2 Missense_Mutation p.R258G 0.11 deleterious(0) probably_damaging(0.946) TCGA-39-5022-01 4 169305853 169305853 C G DDX60L Silent p.L1342L 0.11 TCGA-39-5022-01 4 187540391 187540391 G C FAT1 Nonsense_Mutation p.S2450* 0.10 TCGA-39-5022-01 4 2701692 2701692 G C FAM193A Missense_Mutation p.E974Q 0.11 tolerated(0.23) probably_damaging(0.986) TCGA-39-5022-01 4 30725257 30725257 A G PCDH7 Missense_Mutation p.N738S 0.05 deleterious(0) probably_damaging(0.978) TCGA-39-5022-01 4 42895496 42895496 T G GRXCR1 Missense_Mutation p.D71E 0.09 deleterious(0.02) benign(0.005) TCGA-39-5022-01 4 80328291 80328291 G A GK2 Missense_Mutation p.S355F 0.05 deleterious(0) probably_damaging(0.958) TCGA-39-5022-01 4 95220778 95220778 G A HPGDS Silent p.F151F 0.16 TCGA-39-5022-01 5 140346482 140346482 T A PCDHAC2 Missense_Mutation p.L44Q 0.29 deleterious(0.02) possibly_damaging(0.908) TCGA-39-5022-01 5 140554092 140554092 C A PCDHB7 Missense_Mutation p.P559H 0.08 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-39-5022-01 5 156390205 156390205 G C TIMD4 Missense_Mutation p.S2C 0.09 deleterious(0) probably_damaging(0.996) TCGA-39-5022-01 5 158585685 158585685 G A RNF145 Missense_Mutation p.S692L 0.08 deleterious_low_confidence(0.04) benign(0.003) TCGA-39-5022-01 5 160047610 160047610 C G ATP10B Missense_Mutation p.E720D 0.07 deleterious(0.01) probably_damaging(0.995) TCGA-39-5022-01 5 176477774 176477774 G C ZNF346 Missense_Mutation p.M180I 0.10 tolerated(0.28) benign(0.001) TCGA-39-5022-01 5 31464342 31464342 C A DROSHA Splice_Site p.X858_splice 0.17 TCGA-39-5022-01 5 32599095 32599095 G A SUB1 Missense_Mutation p.R75H 0.07 tolerated(0.07) possibly_damaging(0.577) TCGA-39-5022-01 5 35857078 35857078 G C IL7R 5'UTR 0.03 TCGA-39-5022-01 5 39306829 39306829 A T C9 Missense_Mutation p.Y436N 0.21 deleterious(0.03) possibly_damaging(0.703) TCGA-39-5022-01 5 40852847 40852847 C G CARD6 Silent p.L471L 0.10 TCGA-39-5022-01 5 74063119 74063119 G C GFM2 5'UTR 0.04 TCGA-39-5022-01 5 76932787 76932787 C T OTP Silent p.Q102Q 0.05 TCGA-39-5022-01 5 94852864 94852864 G C TTC37 Silent p.L759L 0.08 TCGA-39-5022-01 5 95759116 95759116 C G PCSK1 Silent p.V148V 0.09 TCGA-39-5022-01 6 112443382 112443383 - T LAMA4 Frame_Shift_Ins p.P1437Hfs*28 0.10 TCGA-39-5022-01 6 117086374 117086374 C A FAM162B Missense_Mutation p.D73Y 0.09 deleterious(0) probably_damaging(1) TCGA-39-5022-01 6 127837647 127837647 C T SOGA3 Missense_Mutation p.R38Q 0.13 deleterious_low_confidence(0) benign(0.238) TCGA-39-5022-01 6 130164698 130164698 G A TMEM244 Missense_Mutation p.S57L 0.10 deleterious(0.02) benign(0.024) TCGA-39-5022-01 6 168947789 168947789 C A SMOC2 Missense_Mutation p.L179M 0.05 tolerated(0.13) possibly_damaging(0.667) TCGA-39-5022-01 6 2948803 2948803 C T SERPINB6 Missense_Mutation p.R287H 0.04 tolerated(0.47) benign(0.035) TCGA-39-5022-01 6 29627140 29627140 G A MOG Missense_Mutation p.V45I 0.26 deleterious(0.03) benign(0.011) TCGA-39-5022-01 6 29691138 29691138 C G HLA-F 5'Flank 0.16 TCGA-39-5022-01 6 31733830 31733830 G A VWA7 Missense_Mutation p.H777Y 0.07 tolerated(1) benign(0.097) TCGA-39-5022-01 6 31778604 31778604 C G HSPA1L Silent p.L382L 0.04 TCGA-39-5022-01 6 36336811 36336811 G A ETV7 Silent p.L234L 0.04 TCGA-39-5022-01 6 49704215 49704215 G T CRISP3 Silent p.P49P 0.17 TCGA-39-5022-01 6 51900492 51900492 G A PKHD1 Missense_Mutation p.S1042F 0.07 tolerated(0.18) probably_damaging(0.962) TCGA-39-5022-01 6 56469654 56469654 T C DST Intron 0.07 TCGA-39-5022-01 6 79655828 79655828 C T PHIP Missense_Mutation p.R1507K 0.04 deleterious_low_confidence(0.01) probably_damaging(0.952) TCGA-39-5022-01 6 85446684 85446684 G A TBX18 Nonsense_Mutation p.Q515* 0.05 TCGA-39-5022-01 7 103290727 103290727 C G RELN Missense_Mutation p.D666H 0.11 deleterious(0) probably_damaging(0.999) TCGA-39-5022-01 7 114282526 114282526 G C FOXP2 Missense_Mutation p.M304I 0.13 tolerated(0.19) unknown(0) TCGA-39-5022-01 7 123150018 123150018 G C IQUB Missense_Mutation p.L157V 0.09 deleterious(0) probably_damaging(0.975) TCGA-39-5022-01 7 155094081 155094081 C G INSIG1 Missense_Mutation p.L220V 0.06 tolerated(0.36) benign(0.128) TCGA-39-5022-01 7 5567445 5567445 C G ACTB Missense_Mutation p.Q354H 0.08 deleterious_low_confidence(0.03) probably_damaging(0.988) TCGA-39-5022-01 7 65160071 65160071 G A INTS4L2 RNA 0.09 TCGA-39-5022-01 7 71177217 71177217 C G WBSCR17 3'UTR 0.23 TCGA-39-5022-01 7 75186969 75186969 C A HIP1 Missense_Mutation p.G524C 0.09 deleterious(0) benign(0.087) TCGA-39-5022-01 7 95848973 95848973 T C SLC25A13 Intron 0.08 TCGA-39-5022-01 8 139833588 139833588 C T COL22A1 Missense_Mutation p.A346T 0.06 unknown(0) TCGA-39-5022-01 8 145151497 145151497 G A CYC1 Missense_Mutation p.E208K 0.05 tolerated(0.23) probably_damaging(0.999) TCGA-39-5022-01 8 22460827 22460827 C T C8orf58 3'UTR 0.06 TCGA-39-5022-01 8 22548418 22548418 G T EGR3 Silent p.G244G 0.11 TCGA-39-5022-01 8 42868513 42868513 G C HOOK3 Missense_Mutation p.E662D 0.04 tolerated(0.06) probably_damaging(0.992) TCGA-39-5022-01 8 97621715 97621715 G A SDC2 Missense_Mutation p.G182E 0.04 deleterious(0) probably_damaging(1) TCGA-39-5022-01 9 107581073 107581073 A T ABCA1 Nonsense_Mutation p.C1111* 0.14 TCGA-39-5022-01 9 117552889 117552889 G C TNFSF15 Missense_Mutation p.S200C 0.08 deleterious(0) probably_damaging(0.988) TCGA-39-5022-01 9 120476482 120476482 A G TLR4 Silent p.L692L 0.15 TCGA-39-5022-01 9 126132615 126132615 C T CRB2 Missense_Mutation p.P428L 0.06 deleterious(0) possibly_damaging(0.713) TCGA-39-5022-01 9 131084583 131084583 C G TRUB2 Silent p.L35L 0.07 TCGA-39-5022-01 9 132502028 132502028 G A PTGES Silent p.L107L 0.20 TCGA-39-5022-01 9 138516149 138516149 C T GLT6D1 Missense_Mutation p.E209K 0.06 deleterious(0) probably_damaging(0.999) TCGA-39-5022-01 9 27455464 27455464 C G MOB3B Missense_Mutation p.E29Q 0.04 tolerated(0.73) benign(0.008) TCGA-39-5022-01 9 32634386 32634386 A G TAF1L Missense_Mutation p.S398P 0.14 tolerated(0.27) benign(0.001) TCGA-39-5022-01 9 368110 368110 G C DOCK8 Missense_Mutation p.G591A 0.09 deleterious(0.04) probably_damaging(0.939) TCGA-39-5022-01 X 106065219 106065219 G A TBC1D8B Missense_Mutation p.E125K 0.22 deleterious(0) benign(0.424) TCGA-39-5022-01 X 114871183 114871183 G C PLS3 Missense_Mutation p.E262Q 0.08 tolerated(0.05) benign(0.003) TCGA-39-5022-01 X 114871194 114871194 G A PLS3 Missense_Mutation p.M265I 0.10 tolerated(0.06) benign(0.014) TCGA-39-5022-01 X 140996143 140996143 G C MAGEC1 Missense_Mutation p.E985Q 0.03 deleterious(0.01) unknown(0) TCGA-39-5022-01 X 19443781 19443781 C G MAP3K15 Missense_Mutation p.R436T 0.20 deleterious(0) probably_damaging(0.991) TCGA-39-5022-01 X 32360357 32360357 C A DMD Missense_Mutation p.A1928S 0.11 possibly_damaging(0.567) TCGA-39-5022-01 X 37028984 37028984 G T FAM47C Missense_Mutation p.S834I 0.33 deleterious(0.01) possibly_damaging(0.888) TCGA-39-5022-01 X 50111908 50111908 C T DGKK RNA 0.08 TCGA-39-5022-01 X 78216921 78216921 C G P2RY10 Missense_Mutation p.P302A 0.03 deleterious(0) probably_damaging(0.985) TCGA-39-5024-01 10 121551579 121551579 G A INPP5F Intron 0.29 TCGA-39-5024-01 10 61414243 61414243 T C SLC16A9 Missense_Mutation p.I181V 0.41 deleterious(0.03) benign(0.305) TCGA-39-5024-01 10 64967767 64967767 T A JMJD1C Missense_Mutation p.E1221V 0.11 deleterious(0) possibly_damaging(0.609) TCGA-39-5024-01 10 64967768 64967768 C A JMJD1C Nonsense_Mutation p.E1221* 0.11 TCGA-39-5024-01 10 89692902 89692902 G A PTEN Missense_Mutation p.G129E 0.32 deleterious(0) probably_damaging(0.998) TCGA-39-5024-01 10 909706 909706 G C LARP4B Missense_Mutation p.S136C 0.10 tolerated(0.13) benign(0.013) TCGA-39-5024-01 10 96039673 96039673 G C PLCE1 Intron 0.12 TCGA-39-5024-01 11 103091471 103091471 G C DYNC2H1 Missense_Mutation p.R3022S 0.08 possibly_damaging(0.46) TCGA-39-5024-01 11 118398237 118398237 C T TTC36 Silent p.L10L 0.17 TCGA-39-5024-01 11 123524489 123524489 C A SCN3B Missense_Mutation p.L7F 0.14 tolerated(0.39) benign(0.037) TCGA-39-5024-01 11 18955526 18955526 G A MRGPRX1 Missense_Mutation p.P269L 0.10 deleterious(0) probably_damaging(0.996) TCGA-39-5024-01 11 27390301 27390301 T G LGR4 Missense_Mutation p.N657H 0.19 tolerated(0.19) benign(0.005) TCGA-39-5024-01 11 43350426 43350426 C G API5 Silent p.L370L 0.18 TCGA-39-5024-01 11 47188328 47188328 G A ARFGAP2 Missense_Mutation p.R439W 0.07 deleterious(0) probably_damaging(0.999) TCGA-39-5024-01 11 55872908 55872908 A G OR8H2 Silent p.L130L 0.11 TCGA-39-5024-01 11 59245380 59245380 A G OR4D10 Missense_Mutation p.I160V 0.14 tolerated(0.4) benign(0.075) TCGA-39-5024-01 11 59939686 59939686 C T MS4A6A 3'Flank 0.11 TCGA-39-5024-01 11 6190816 6190816 G A OR52B2 Silent p.L247L 0.10 TCGA-39-5024-01 11 65835515 65835515 C T SF3B2 Missense_Mutation p.T810M 0.11 deleterious(0.02) benign(0.194) TCGA-39-5024-01 11 822471 822471 C T PNPLA2 Silent p.F187F 0.07 TCGA-39-5024-01 11 93464250 93464250 G C KIAA1731 3'Flank 0.16 TCGA-39-5024-01 12 111070361 111070361 G C TCTN1 Missense_Mutation p.A237P 0.19 deleterious(0.03) benign(0.222) TCGA-39-5024-01 12 120195326 120195326 G C CIT Missense_Mutation p.S852C 0.14 deleterious(0) possibly_damaging(0.885) TCGA-39-5024-01 12 15650234 15650234 A C PTPRO Silent p.T135T 0.12 TCGA-39-5024-01 12 24736226 24736226 A G LINC00477 RNA 0.10 TCGA-39-5024-01 12 32137042 32137042 A T KIAA1551 Silent p.L1051L 0.21 TCGA-39-5024-01 12 495116 495116 C G KDM5A Missense_Mutation p.E64Q 0.17 deleterious(0) benign(0.385) TCGA-39-5024-01 12 50387974 50387974 G A RACGAP1 Nonsense_Mutation p.R427* 0.15 TCGA-39-5024-01 12 55820491 55820491 G C OR6C76 Missense_Mutation p.V152L 0.15 deleterious_low_confidence(0.05) benign(0.02) TCGA-39-5024-01 12 64011105 64011105 A C DPY19L2 Silent p.S399S 0.14 TCGA-39-5024-01 12 7172571 7172571 G A C1S Missense_Mutation p.D229N 0.08 tolerated(0.38) benign(0.098) TCGA-39-5024-01 13 35615106 35615106 A G NBEA Missense_Mutation p.I111V 0.08 tolerated(0.2) benign(0.338) TCGA-39-5024-01 13 43462602 43462602 T C EPSTI1 Silent p.S339S 0.04 TCGA-39-5024-01 13 77672487 77672487 T C MYCBP2 Silent p.E2896E 0.07 TCGA-39-5024-01 13 77742737 77742737 T - MYCBP2 Frame_Shift_Del p.V1943Lfs*4 0.20 TCGA-39-5024-01 13 77900608 77900608 C T MYCBP2 Splice_Site p.X63_splice 0.09 TCGA-39-5024-01 13 84455087 84455087 C G SLITRK1 Missense_Mutation p.G186R 0.04 deleterious(0) probably_damaging(1) TCGA-39-5024-01 13 96293633 96293633 C T DZIP1 Silent p.K171K 0.09 TCGA-39-5024-01 13 97999141 97999141 C G MBNL2 Missense_Mutation p.I208M 0.30 tolerated(0.07) benign(0.299) TCGA-39-5024-01 14 102499791 102499791 C T DYNC1H1 Silent p.I3461I 0.26 TCGA-39-5024-01 14 103946810 103946810 G A MARK3 Silent p.Q523Q 0.29 TCGA-39-5024-01 14 35231112 35231112 T C BAZ1A Missense_Mutation p.N1365S 0.27 tolerated_low_confidence(0.32) benign(0.027) TCGA-39-5024-01 14 55817179 55817179 G C FBXO34 Missense_Mutation p.R24T 0.31 deleterious(0.01) benign(0.372) TCGA-39-5024-01 14 68274248 68274248 C G ZFYVE26 Silent p.G251G 0.27 TCGA-39-5024-01 14 92563086 92563086 C G ATXN3 Missense_Mutation p.D41H 0.07 deleterious(0) probably_damaging(0.995) TCGA-39-5024-01 15 40685615 40685615 T A KNSTRN Intron 0.15 TCGA-39-5024-01 15 41388466 41388466 C T INO80 Missense_Mutation p.E15K 0.13 tolerated(0.33) benign(0.002) TCGA-39-5024-01 15 44900797 44900797 G C SPG11 Missense_Mutation p.Q1100E 0.22 tolerated(0.06) benign(0) TCGA-39-5024-01 15 50515285 50515285 G A SLC27A2 Missense_Mutation p.E366K 0.08 deleterious(0) probably_damaging(1) TCGA-39-5024-01 15 73852096 73852096 C G C15orf60 Missense_Mutation p.L214V 0.09 tolerated(1) benign(0.221) TCGA-39-5024-01 15 74173766 74173766 G C TBC1D21 Missense_Mutation p.K29N 0.13 tolerated(0.43) benign(0.029) TCGA-39-5024-01 15 78474488 78474488 C G ACSBG1 Splice_Site p.X299_splice 0.14 TCGA-39-5024-01 16 15853504 15853504 G A MYH11 Silent p.L451L 0.17 TCGA-39-5024-01 16 19603129 19603129 A G C16orf62 Silent p.S308S 0.11 TCGA-39-5024-01 16 20422796 20422796 G T ACSM5 5'UTR 0.31 TCGA-39-5024-01 16 28967599 28967599 C T NFATC2IP Nonsense_Mutation p.R263* 0.10 TCGA-39-5024-01 16 3349552 3349552 C G TIGD7 Missense_Mutation p.E355Q 0.12 deleterious(0.03) possibly_damaging(0.825) TCGA-39-5024-01 16 50346817 50346817 C T ADCY7 Missense_Mutation p.S874F 0.13 deleterious(0) probably_damaging(1) TCGA-39-5024-01 17 12908318 12908318 G A ELAC2 Missense_Mutation p.A324V 0.22 tolerated(0.23) benign(0.043) TCGA-39-5024-01 17 15234856 15234856 C T TEKT3 Missense_Mutation p.R16K 0.15 tolerated(0.56) benign(0.001) TCGA-39-5024-01 17 26890464 26890464 G A PIGS Silent p.S151S 0.11 TCGA-39-5024-01 17 40936150 40936150 C T WNK4 Silent p.R329R 0.16 TCGA-39-5024-01 17 4883886 4883886 C T CAMTA2 Missense_Mutation p.S267N 0.19 tolerated(0.06) benign(0.008) TCGA-39-5024-01 17 60837244 60837244 T C MARCH10 Missense_Mutation p.M112V 0.20 deleterious(0) benign(0.265) TCGA-39-5024-01 17 7330607 7330607 G A C17orf74 Missense_Mutation p.V433I 0.13 tolerated(0.05) possibly_damaging(0.621) TCGA-39-5024-01 17 7576928 7576928 T A TP53 Splice_Site p.X307_splice 0.25 TCGA-39-5024-01 18 21059301 21059301 C G RIOK3 Silent p.V455V 0.14 TCGA-39-5024-01 18 50923735 50923735 T C DCC Missense_Mutation p.Y916H 0.17 deleterious(0) probably_damaging(1) TCGA-39-5024-01 18 64235805 64235805 T A CDH19 Missense_Mutation p.Y113F 0.13 deleterious(0) probably_damaging(0.999) TCGA-39-5024-01 18 67687945 67687945 T C RTTN Missense_Mutation p.Q2020R 0.12 tolerated(0.16) benign(0.009) TCGA-39-5024-01 18 67742704 67742704 T A RTTN Missense_Mutation p.H1483L 0.16 deleterious(0) probably_damaging(0.972) TCGA-39-5024-01 19 10476232 10476232 G C TYK2 Missense_Mutation p.I324M 0.14 deleterious(0) possibly_damaging(0.885) TCGA-39-5024-01 19 19655799 19655799 C T CILP2 Silent p.G815G 0.22 TCGA-39-5024-01 19 20215134 20215134 G T ZNF90 Missense_Mutation p.R30S 0.15 deleterious(0) probably_damaging(0.999) TCGA-39-5024-01 19 21265135 21265135 A T ZNF714 5'UTR 0.06 TCGA-39-5024-01 19 36940338 36940338 A G ZNF566 Silent p.S267S 0.06 TCGA-39-5024-01 19 37037943 37037943 T C ZNF529 Missense_Mutation p.Y506C 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-39-5024-01 19 37210578 37210578 T C ZNF567 Missense_Mutation p.F287L 0.15 deleterious(0) probably_damaging(0.99) TCGA-39-5024-01 19 38189610 38189610 C G ZNF607 Missense_Mutation p.E474D 0.10 deleterious(0.02) benign(0.236) TCGA-39-5024-01 19 38692538 38692538 C T SIPA1L3 Missense_Mutation p.P1674L 0.06 tolerated(0.31) benign(0.022) TCGA-39-5024-01 19 40419950 40419950 G A FCGBP Missense_Mutation p.A1015V 0.14 probably_damaging(0.963) TCGA-39-5024-01 19 41932349 41932349 G T B3GNT8 Missense_Mutation p.P112H 0.17 deleterious(0) probably_damaging(0.998) TCGA-39-5024-01 19 44470198 44470198 G A ZNF221 Missense_Mutation p.V182I 0.15 tolerated(0.58) benign(0.196) TCGA-39-5024-01 19 50000835 50000835 G C RPS11 Missense_Mutation p.R69P 0.05 deleterious(0.02) benign(0.281) TCGA-39-5024-01 19 50099808 50099808 C T PRR12 Missense_Mutation p.P739L 0.12 possibly_damaging(0.851) TCGA-39-5024-01 19 52714609 52714609 G A PPP2R1A Missense_Mutation p.D123N 0.09 tolerated(0.11) benign(0.147) TCGA-39-5024-01 19 56466026 56466026 G C NLRP8 Missense_Mutation p.R201T 0.18 tolerated(0.06) possibly_damaging(0.829) TCGA-39-5024-01 19 57325481 57325481 G C PEG3 Silent p.A1443A 0.13 TCGA-39-5024-01 1 109806324 109806324 C G CELSR2 Silent p.L1642L 0.11 TCGA-39-5024-01 1 15987907 15987907 C T RSC1A1 Missense_Mutation p.S515L 0.31 tolerated(0.1) possibly_damaging(0.663) TCGA-39-5024-01 1 160811111 160811111 C G CD244 Missense_Mutation p.E187Q 0.05 tolerated(0.25) benign(0.348) TCGA-39-5024-01 1 164789349 164789349 G T PBX1 Missense_Mutation p.L346F 0.08 tolerated(0.16) benign(0.288) TCGA-39-5024-01 1 17313556 17313556 G A ATP13A2 Missense_Mutation p.T1023I 0.18 tolerated(0.09) benign(0.049) TCGA-39-5024-01 1 176525454 176525454 G A PAPPA2 5'UTR 0.08 TCGA-39-5024-01 1 176915252 176915252 T G ASTN1 Missense_Mutation p.I687L 0.06 deleterious(0.04) benign(0.002) TCGA-39-5024-01 1 178310680 178310680 C G RASAL2 Intron 0.12 TCGA-39-5024-01 1 178433416 178433416 C G RASAL2 Missense_Mutation p.Q1086E 0.15 tolerated(0.96) benign(0.048) TCGA-39-5024-01 1 179815858 179815858 G A TOR1AIP2 Missense_Mutation p.A254V 0.25 tolerated(0.11) probably_damaging(0.974) TCGA-39-5024-01 1 183507541 183507541 T A SMG7 Missense_Mutation p.L421I 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-39-5024-01 1 19447774 19447774 G A UBR4 Silent p.A3350A 0.12 TCGA-39-5024-01 1 204237406 204237406 C A PLEKHA6 Missense_Mutation p.G46V 0.11 deleterious(0.01) benign(0.103) TCGA-39-5024-01 1 212273994 212273994 G C DTL Missense_Mutation p.R554S 0.09 deleterious(0) probably_damaging(0.999) TCGA-39-5024-01 1 21564678 21564678 C A ECE1 Silent p.A446A 0.12 TCGA-39-5024-01 1 229438736 229438736 G A RAB4A Intron 0.15 TCGA-39-5024-01 1 23689283 23689283 C T ZNF436 Missense_Mutation p.E198K 0.14 tolerated(0.06) possibly_damaging(0.649) TCGA-39-5024-01 1 242042620 242042620 G A EXO1 Missense_Mutation p.C695Y 0.11 tolerated(1) benign(0.002) TCGA-39-5024-01 1 2442178 2442178 C G PANK4 Missense_Mutation p.G626A 0.03 deleterious(0.01) possibly_damaging(0.896) TCGA-39-5024-01 1 248366988 248366988 A C OR2M3 Missense_Mutation p.I207L 0.25 tolerated(1) benign(0.002) TCGA-39-5024-01 1 248487074 248487074 T G OR2M7 Missense_Mutation p.H266P 0.10 deleterious(0.01) possibly_damaging(0.507) TCGA-39-5024-01 1 35332772 35332772 C T DLGAP3 Silent p.V866V 0.09 TCGA-39-5024-01 1 39801303 39801303 A G MACF1 Intron 0.15 TCGA-39-5024-01 1 39824465 39824465 G A MACF1 Missense_Mutation p.E1952K 0.21 benign(0.011) TCGA-39-5024-01 1 62293228 62293228 C A INADL Silent p.R651R 0.10 TCGA-39-5024-01 1 76251913 76251913 G C RABGGTB 5'UTR 0.11 TCGA-39-5024-01 1 78958394 78958394 G C PTGFR 5'UTR 0.21 TCGA-39-5024-01 1 99157223 99157223 G T SNX7 Missense_Mutation p.D203Y 0.09 tolerated(0.16) probably_damaging(0.988) TCGA-39-5024-01 1 99380394 99380394 A G LPPR5 Missense_Mutation p.M294T 0.16 tolerated(0.61) benign(0.002) TCGA-39-5024-01 20 2083902 2083902 C T STK35 Silent p.V261V 0.25 TCGA-39-5024-01 20 3095978 3095978 T C UBOX5 Missense_Mutation p.T464A 0.11 tolerated(0.18) benign(0.003) TCGA-39-5024-01 20 62853285 62853285 G C MYT1 Missense_Mutation p.D761H 0.10 probably_damaging(1) TCGA-39-5024-01 21 17214736 17214736 A C USP25 Silent p.P738P 0.20 TCGA-39-5024-01 21 17443570 17443570 T C LINC00478 RNA 0.05 TCGA-39-5024-01 21 31874377 31874377 A C KRTAP19-5 Missense_Mutation p.L11R 0.21 deleterious_low_confidence(0) unknown(0) TCGA-39-5024-01 21 37418233 37418233 G C SETD4 Missense_Mutation p.L125V 0.05 tolerated(0.34) benign(0.005) TCGA-39-5024-01 21 37591765 37591765 A G DOPEY2 Missense_Mutation p.T409A 0.13 tolerated(0.09) benign(0.146) TCGA-39-5024-01 21 40570728 40570728 C G BRWD1 Missense_Mutation p.D1872H 0.14 tolerated_low_confidence(0.07) possibly_damaging(0.728) TCGA-39-5024-01 21 41385159 41385159 C T DSCAM Silent p.P1947P 0.10 TCGA-39-5024-01 21 42779983 42779983 T A MX2 Missense_Mutation p.N657K 0.13 tolerated(0.14) possibly_damaging(0.522) TCGA-39-5024-01 21 45709879 45709879 T C AIRE Silent p.G269G 0.16 TCGA-39-5024-01 22 22869714 22869714 G A ZNF280A Nonsense_Mutation p.Q81* 0.18 TCGA-39-5024-01 22 32015789 32015789 C T PISD Missense_Mutation p.G313S 0.19 tolerated(0.08) possibly_damaging(0.734) TCGA-39-5024-01 22 39884490 39884490 C T MGAT3 Missense_Mutation p.R380C 0.10 tolerated(0.05) possibly_damaging(0.849) TCGA-39-5024-01 22 40706902 40706902 G T TNRC6B Missense_Mutation p.G1447V 0.13 deleterious(0.01) benign(0.03) TCGA-39-5024-01 2 125627272 125627272 C T CNTNAP5 Silent p.L1122L 0.12 TCGA-39-5024-01 2 165542495 165542495 G C COBLL1 Silent p.L1154L 0.09 TCGA-39-5024-01 2 170493071 170493071 G A PPIG Missense_Mutation p.E435K 0.10 deleterious_low_confidence(0) unknown(0) TCGA-39-5024-01 2 179494076 179494076 G C TTN Missense_Mutation p.I14792M 0.08 TCGA-39-5024-01 2 179593630 179593630 G T TTN Missense_Mutation p.L6379I 0.15 TCGA-39-5024-01 2 179597601 179597601 G T TTN Silent p.S5434S 0.15 TCGA-39-5024-01 2 202900382 202900382 A G FZD7 Missense_Mutation p.I338V 0.20 tolerated(0.57) benign(0.047) TCGA-39-5024-01 2 21230157 21230157 C G APOB Missense_Mutation p.E3195Q 0.23 benign(0.284) TCGA-39-5024-01 2 219295494 219295494 T G VIL1 Missense_Mutation p.V332G 0.05 deleterious(0) probably_damaging(0.987) TCGA-39-5024-01 2 231927224 231927224 G A PSMD1 Missense_Mutation p.V47I 0.12 tolerated(0.61) benign(0.001) TCGA-39-5024-01 2 232458735 232458735 C G C2orf57 Missense_Mutation p.T358S 0.11 deleterious(0.03) benign(0.005) TCGA-39-5024-01 2 234366959 234366959 G T DGKD Missense_Mutation p.K870N 0.18 deleterious(0) probably_damaging(0.974) TCGA-39-5024-01 2 277335 277335 G T ACP1 3'UTR 0.12 TCGA-39-5024-01 2 31010096 31010096 G T CAPN13 Silent p.G32G 0.12 TCGA-39-5024-01 2 39971520 39971520 C A THUMPD2 Nonsense_Mutation p.E393* 0.11 TCGA-39-5024-01 2 48808750 48808750 A T STON1-GTF2A1L Silent p.P326P 0.10 TCGA-39-5024-01 2 61706014 61706014 G C XPO1 Missense_Mutation p.Q1053E 0.12 tolerated(0.65) benign(0.037) TCGA-39-5024-01 2 73519557 73519557 A G EGR4 Silent p.P266P 0.33 TCGA-39-5024-01 2 74601547 74601547 G C DCTN1 Intron 0.28 TCGA-39-5024-01 2 98804508 98804508 G A VWA3B Missense_Mutation p.S461N 0.09 deleterious(0.01) benign(0.039) TCGA-39-5024-01 3 105421219 105421219 C T CBLB Missense_Mutation p.E560K 0.10 tolerated_low_confidence(0.1) benign(0.017) TCGA-39-5024-01 3 108288392 108288392 C T KIAA1524 Missense_Mutation p.M319I 0.06 tolerated(0.41) benign(0.004) TCGA-39-5024-01 3 113376876 113376876 C T KIAA2018 Missense_Mutation p.G1218E 0.12 benign(0.064) TCGA-39-5024-01 3 121200502 121200502 C A POLQ Missense_Mutation p.R2043L 0.14 deleterious(0) probably_damaging(0.912) TCGA-39-5024-01 3 124132412 124132412 G A KALRN Silent p.Q812Q 0.24 TCGA-39-5024-01 3 132201158 132201158 C G DNAJC13 Missense_Mutation p.P988R 0.19 deleterious(0) probably_damaging(0.998) TCGA-39-5024-01 3 136068192 136068192 C T STAG1 Missense_Mutation p.E1027K 0.09 tolerated(0.05) benign(0.047) TCGA-39-5024-01 3 1427380 1427380 G A CNTN6 Missense_Mutation p.G868E 0.18 deleterious(0) probably_damaging(0.987) TCGA-39-5024-01 3 149216522 149216522 G T TM4SF4 Missense_Mutation p.D139Y 0.14 deleterious(0) probably_damaging(0.974) TCGA-39-5024-01 3 156232996 156232996 C A KCNAB1 Silent p.L284L 0.12 TCGA-39-5024-01 3 185236980 185236980 C A LIPH Missense_Mutation p.G279V 0.11 deleterious(0) probably_damaging(0.997) TCGA-39-5024-01 3 19491639 19491639 A T KCNH8 Missense_Mutation p.I473L 0.20 deleterious(0) possibly_damaging(0.827) TCGA-39-5024-01 3 24206830 24206830 G A THRB Intron 0.16 TCGA-39-5024-01 3 52682440 52682440 T A PBRM1 Missense_Mutation p.I245F 0.19 deleterious(0.01) benign(0.025) TCGA-39-5024-01 3 97367220 97367220 C T EPHA6 Intron 0.15 TCGA-39-5024-01 3 9791872 9791872 C T OGG1 5'UTR 0.18 TCGA-39-5024-01 4 104066284 104066284 C T CENPE Missense_Mutation p.E1594K 0.18 possibly_damaging(0.51) TCGA-39-5024-01 4 123165066 123165066 A T KIAA1109 Missense_Mutation p.L1600F 0.14 benign(0.1) TCGA-39-5024-01 4 141543624 141543624 C T TBC1D9 Missense_Mutation p.D1176N 0.07 deleterious_low_confidence(0.03) benign(0.274) TCGA-39-5024-01 4 154624935 154624935 T C TLR2 Silent p.V292V 0.15 TCGA-39-5024-01 4 155467273 155467273 A T PLRG1 Splice_Site p.X135_splice 0.13 TCGA-39-5024-01 4 164271506 164271506 C T NPY5R Silent p.F27F 0.06 TCGA-39-5024-01 4 20711365 20711365 C G PACRGL Nonsense_Mutation p.S112* 0.06 TCGA-39-5024-01 4 25677891 25677891 C G SLC34A2 Missense_Mutation p.F531L 0.13 tolerated(1) benign(0.002) TCGA-39-5024-01 4 47877170 47877170 C G NFXL1 Missense_Mutation p.K740N 0.12 deleterious(0.02) benign(0.128) TCGA-39-5024-01 4 48581237 48581237 T C FRYL Missense_Mutation p.S761G 0.10 tolerated(0.21) benign(0) TCGA-39-5024-01 4 5743447 5743447 T A EVC Missense_Mutation p.F236Y 0.10 deleterious(0.05) possibly_damaging(0.881) TCGA-39-5024-01 4 65175614 65175614 C G TECRL Missense_Mutation p.R196P 0.18 deleterious(0) probably_damaging(1) TCGA-39-5024-01 4 70156509 70156509 G A UGT2B28 Silent p.K430K 0.20 TCGA-39-5024-01 4 70361034 70361034 C G UGT2B4 Missense_Mutation p.K182N 0.10 deleterious(0) probably_damaging(0.981) TCGA-39-5024-01 4 83778220 83778220 C G SEC31A Missense_Mutation p.C589S 0.10 deleterious(0) probably_damaging(1) TCGA-39-5024-01 4 94344073 94344073 A C GRID2 Missense_Mutation p.Q500P 0.15 tolerated(0.12) benign(0.022) TCGA-39-5024-01 5 112174552 112174552 C T APC Silent p.L1087L 0.05 TCGA-39-5024-01 5 140773546 140773546 A T PCDHGA8 Missense_Mutation p.N389I 0.13 deleterious_low_confidence(0.02) benign(0.353) TCGA-39-5024-01 5 152873579 152873579 G T GRIA1 Missense_Mutation p.Q68H 0.16 tolerated(1) benign(0.007) TCGA-39-5024-01 5 154202038 154202038 C A FAXDC2 Missense_Mutation p.E224D 0.08 deleterious(0.02) possibly_damaging(0.558) TCGA-39-5024-01 5 160047859 160047859 G A ATP10B Silent p.F637F 0.10 TCGA-39-5024-01 5 16465211 16465211 C T ZNF622 Silent p.K188K 0.06 TCGA-39-5024-01 5 167850747 167850747 C G WWC1 Nonsense_Mutation p.S495* 0.16 TCGA-39-5024-01 5 19473700 19473700 C A CDH18 Missense_Mutation p.A670S 0.55 deleterious(0) possibly_damaging(0.735) TCGA-39-5024-01 5 40841657 40841657 G C CARD6 Missense_Mutation p.R58P 0.09 deleterious(0.04) probably_damaging(0.966) TCGA-39-5024-01 5 41176712 41176712 G C C6 Missense_Mutation p.L345V 0.09 deleterious(0) probably_damaging(0.982) TCGA-39-5024-01 5 484789 484789 C G SLC9A3 Missense_Mutation p.G260R 0.06 deleterious(0) probably_damaging(1) TCGA-39-5024-01 6 121768672 121768672 G T GJA1 Nonsense_Mutation p.E227* 0.14 TCGA-39-5024-01 6 129513971 129513971 C T LAMA2 Silent p.S585S 0.14 TCGA-39-5024-01 6 136597477 136597477 C A BCLAF1 Missense_Mutation p.D396Y 0.04 deleterious(0) probably_damaging(0.934) TCGA-39-5024-01 6 142487437 142487437 A G VTA1 Missense_Mutation p.K62R 0.25 tolerated(0.18) possibly_damaging(0.606) TCGA-39-5024-01 6 151914290 151914290 A T CCDC170 Missense_Mutation p.M448L 0.34 tolerated(0.36) benign(0.016) TCGA-39-5024-01 6 152763321 152763321 C T SYNE1 Silent p.A1299A 0.12 TCGA-39-5024-01 6 155632376 155632376 G C TFB1M Missense_Mutation p.D77E 0.28 tolerated(0.24) benign(0.003) TCGA-39-5024-01 6 170892822 170892822 T G PDCD2 Missense_Mutation p.Q99H 0.13 deleterious(0.03) probably_damaging(0.996) TCGA-39-5024-01 6 27100914 27100914 G C HIST1H2AG Missense_Mutation p.A22P 0.20 deleterious_low_confidence(0.02) unknown(0) TCGA-39-5024-01 6 29054033 29054033 C G OR2B3 3'UTR 0.20 TCGA-39-5024-01 6 29911061 29911061 G C HLA-A Missense_Mutation p.Q120H 0.21 deleterious_low_confidence(0) benign(0.032) TCGA-39-5024-01 6 32020577 32020577 C T TNXB Silent p.V2993V 0.10 TCGA-39-5024-01 6 39835470 39835470 G T DAAM2 Missense_Mutation p.A205S 0.06 tolerated(0.13) benign(0.097) TCGA-39-5024-01 6 43008035 43008035 C - CUL7 Frame_Shift_Del p.A1469Qfs*24 0.21 TCGA-39-5024-01 6 69949088 69949088 A T BAI3 Silent p.I928I 0.17 TCGA-39-5024-01 6 74124385 74124385 G A DDX43 Missense_Mutation p.R574Q 0.10 deleterious(0.01) probably_damaging(1) TCGA-39-5024-01 7 104752933 104752933 C T KMT2E Missense_Mutation p.S1577F 0.13 deleterious_low_confidence(0.02) benign(0.046) TCGA-39-5024-01 7 131128447 131128447 A T MKLN1 Missense_Mutation p.M461L 0.24 deleterious(0.04) possibly_damaging(0.823) TCGA-39-5024-01 7 143028687 143028687 C A CLCN1 Missense_Mutation p.R370S 0.04 deleterious(0) probably_damaging(0.999) TCGA-39-5024-01 7 150710212 150710212 C T ATG9B 3'UTR 0.18 TCGA-39-5024-01 7 158835748 158835748 C A VIPR2 Missense_Mutation p.C192F 0.19 deleterious(0) probably_damaging(0.995) TCGA-39-5024-01 7 24784198 24784198 G C DFNA5 Missense_Mutation p.I129M 0.05 tolerated(0.74) benign(0.207) TCGA-39-5024-01 7 32612988 32612988 G C AVL9 Missense_Mutation p.A510P 0.13 tolerated(0.17) possibly_damaging(0.811) TCGA-39-5024-01 7 35284591 35284591 G A TBX20 Silent p.L208L 0.10 TCGA-39-5024-01 7 4249744 4249744 G A SDK1 Missense_Mutation p.G1830D 0.07 deleterious(0) probably_damaging(1) TCGA-39-5024-01 7 48545964 48545964 G A ABCA13 Missense_Mutation p.A4442T 0.38 possibly_damaging(0.541) TCGA-39-5024-01 7 56131968 56131968 G A SUMF2 Silent p.R7R 0.24 TCGA-39-5024-01 7 63726285 63726285 C G ZNF679 Missense_Mutation p.H92D 0.07 deleterious(0.01) benign(0.143) TCGA-39-5024-01 7 66548450 66548450 G A TYW1 Silent p.R436R 0.16 TCGA-39-5024-01 7 73008360 73008360 G A MLXIPL Intron 0.12 TCGA-39-5024-01 7 86479854 86479854 T G GRM3 Missense_Mutation p.S854A 0.13 tolerated(0.23) benign(0.005) TCGA-39-5024-01 7 99217191 99217191 G T ZSCAN25 5'UTR 0.14 TCGA-39-5024-01 8 105456559 105456559 G C DPYS Missense_Mutation p.A237G 0.29 deleterious(0.03) possibly_damaging(0.773) TCGA-39-5024-01 8 113564842 113564842 C T CSMD3 Missense_Mutation p.D1448N 0.15 tolerated(0.22) benign(0.192) TCGA-39-5024-01 8 121256238 121256238 G A COL14A1 Missense_Mutation p.G824R 0.12 deleterious(0) probably_damaging(1) TCGA-39-5024-01 8 145738752 145738752 G A RECQL4 Missense_Mutation p.T771M 0.07 deleterious(0) probably_damaging(1) TCGA-39-5024-01 8 20007193 20007193 C T SLC18A1 Silent p.L380L 0.14 TCGA-39-5024-01 8 30404879 30404879 C G RBPMS Missense_Mutation p.S200C 0.15 deleterious_low_confidence(0.05) possibly_damaging(0.709) TCGA-39-5024-01 8 37728907 37728907 C G RAB11FIP1 Missense_Mutation p.R1138T 0.12 deleterious(0) benign(0.215) TCGA-39-5024-01 8 40554884 40554884 A T ZMAT4 Missense_Mutation p.C77S 0.12 deleterious(0) probably_damaging(0.999) TCGA-39-5024-01 8 52321164 52321164 G A PXDNL Missense_Mutation p.A1007V 0.24 deleterious(0) probably_damaging(0.989) TCGA-39-5024-01 9 139751491 139751491 T A MAMDC4 Missense_Mutation p.I657N 0.14 tolerated(0.06) benign(0.414) TCGA-39-5024-01 9 140139670 140139670 G C FAM166A Missense_Mutation p.L175V 0.16 tolerated(0.09) probably_damaging(0.996) TCGA-39-5024-01 9 14307521 14307521 T C NFIB Splice_Site p.X11_splice 0.27 TCGA-39-5024-01 9 19063106 19063106 G C HAUS6 Nonsense_Mutation p.S510* 0.09 TCGA-39-5024-01 9 19786143 19786143 T C SLC24A2 Missense_Mutation p.D241G 0.35 deleterious(0) probably_damaging(1) TCGA-39-5024-01 9 33796728 33796728 C G PRSS3 Missense_Mutation p.S100C 0.03 deleterious(0.04) probably_damaging(0.914) TCGA-39-5024-01 9 35611798 35611798 T G CD72 Intron 0.32 TCGA-39-5024-01 9 35710635 35710635 C T TLN1 Missense_Mutation p.G1417R 0.13 tolerated(0.06) benign(0.267) TCGA-39-5024-01 9 6015178 6015178 G C RANBP6 Missense_Mutation p.L144V 0.12 deleterious(0.01) probably_damaging(0.947) TCGA-39-5024-01 X 101818211 101818211 C T NXF4 RNA 0.15 TCGA-39-5024-01 X 102864065 102864065 G A TCEAL3 Missense_Mutation p.D25N 0.23 deleterious(0.04) benign(0.174) TCGA-39-5024-01 X 108719118 108719118 C T GUCY2F Silent p.A16A 0.15 TCGA-39-5024-01 X 109937485 109937485 C T CHRDL1 Silent p.G228G 0.19 TCGA-39-5024-01 X 111914294 111914294 C T LHFPL1 Missense_Mutation p.E109K 0.17 tolerated(0.69) benign(0.017) TCGA-39-5024-01 X 119410745 119410745 C T TMEM255A Missense_Mutation p.D248N 0.08 deleterious(0) probably_damaging(0.999) TCGA-39-5024-01 X 119504619 119504619 G A ATP1B4 Silent p.V126V 0.03 TCGA-39-5024-01 X 140985257 140985257 G T MAGEC3 Silent p.V571V 0.11 TCGA-39-5024-01 X 151935123 151935123 C T MAGEA3 3'UTR 0.14 TCGA-39-5024-01 X 153628196 153628196 C T RPL10 Silent p.G81G 0.11 TCGA-39-5024-01 X 31497149 31497149 C A DMD Silent p.L2873L 0.10 TCGA-39-5024-01 X 41078486 41078486 T A USP9X Splice_Site p.X2189_splice 0.13 TCGA-39-5024-01 X 50165475 50165475 C A DGKK RNA 0.06 TCGA-39-5024-01 X 53106694 53106694 C A GPR173 Silent p.L297L 0.12 TCGA-39-5024-01 X 54472818 54472818 G A FGD1 Silent p.L870L 0.13 TCGA-39-5024-01 X 57934971 57934971 G T ZXDA Silent p.I628I 0.12 TCGA-39-5024-01 X 57935713 57935713 C A ZXDA Missense_Mutation p.S381I 0.15 deleterious(0.01) possibly_damaging(0.87) TCGA-39-5024-01 X 73043423 73043423 T C XIST RNA 0.13 TCGA-39-5024-01 X 77150848 77150848 G T MAGT1 Silent p.I52I 0.12 TCGA-39-5024-01 X 78011509 78011509 G T LPAR4 3'UTR 0.05 TCGA-39-5024-01 X 80064747 80064747 G A BRWD3 Nonsense_Mutation p.Q30* 0.22 TCGA-39-5028-01 10 114044304 114044304 G C TECTB Missense_Mutation p.V30L 0.09 deleterious(0) probably_damaging(0.998) TCGA-39-5028-01 10 46121646 46121646 G A ZFAND4 Missense_Mutation p.S542F 0.14 deleterious(0) probably_damaging(0.998) TCGA-39-5028-01 10 63959610 63959610 C A RTKN2 Missense_Mutation p.K399N 0.15 deleterious(0) probably_damaging(0.999) TCGA-39-5028-01 10 860896 860896 G A LARP4B Missense_Mutation p.H604Y 0.08 deleterious(0.04) benign(0.162) TCGA-39-5028-01 11 10517157 10517157 C T AMPD3 Missense_Mutation p.S445L 0.17 deleterious(0) benign(0.007) TCGA-39-5028-01 11 116633646 116633646 T C BUD13 Missense_Mutation p.H220R 0.23 tolerated(0.07) benign(0.023) TCGA-39-5028-01 11 117244507 117244507 C G CEP164 Nonsense_Mutation p.S398* 0.08 TCGA-39-5028-01 11 117244538 117244538 C T CEP164 Silent p.F408F 0.07 TCGA-39-5028-01 11 119545974 119545974 G A PVRL1 Missense_Mutation p.L300F 0.13 deleterious(0) probably_damaging(0.945) TCGA-39-5028-01 11 124440462 124440462 C T OR8A1 Silent p.Y166Y 0.18 TCGA-39-5028-01 11 31648666 31648666 C A ELP4 Silent p.T221T 0.12 TCGA-39-5028-01 11 33053045 33053045 C T DEPDC7 Silent p.L302L 0.14 TCGA-39-5028-01 11 3381028 3381028 C G ZNF195 Missense_Mutation p.E404Q 0.04 deleterious(0.02) probably_damaging(0.982) TCGA-39-5028-01 11 4703778 4703778 T C OR51E2 Missense_Mutation p.H55R 0.23 deleterious(0.02) probably_damaging(0.996) TCGA-39-5028-01 11 5462646 5462646 G C OR51I1 Missense_Mutation p.F33L 0.10 tolerated(0.78) probably_damaging(0.986) TCGA-39-5028-01 11 69482722 69482722 C T ORAOV1 Missense_Mutation p.D96N 0.17 tolerated(0.11) benign(0.338) TCGA-39-5028-01 11 78369355 78369355 C G TENM4 Missense_Mutation p.E2686D 0.22 deleterious(0.05) probably_damaging(0.984) TCGA-39-5028-01 11 87025542 87025542 T C TMEM135 Missense_Mutation p.Y344H 0.18 deleterious(0) probably_damaging(0.987) TCGA-39-5028-01 12 10167165 10167165 G A CLEC12B Silent p.L78L 0.05 TCGA-39-5028-01 12 11420897 11420897 G A PRB3 Missense_Mutation p.P96S 0.06 tolerated(0.54) unknown(0) TCGA-39-5028-01 12 123042029 123042029 C T KNTC1 Silent p.D457D 0.07 TCGA-39-5028-01 12 368929 368929 G A SLC6A13 Intron 0.14 TCGA-39-5028-01 12 48174804 48174804 A T SLC48A1 3'UTR 0.33 TCGA-39-5028-01 12 53876922 53876922 C T MAP3K12 Silent p.L555L 0.09 TCGA-39-5028-01 12 53877249 53877249 C G MAP3K12 Silent p.R499R 0.11 TCGA-39-5028-01 12 53877268 53877268 C T MAP3K12 Missense_Mutation p.R493Q 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-39-5028-01 12 57348692 57348692 G C RDH16 Silent p.L190L 0.06 TCGA-39-5028-01 12 72058271 72058271 G C THAP2 5'UTR 0.04 TCGA-39-5028-01 12 9221440 9221440 T C A2M Splice_Site p.X1422_splice 0.37 TCGA-39-5028-01 13 24190102 24190102 C G TNFRSF19 Missense_Mutation p.L93V 0.06 tolerated(0.06) benign(0.139) TCGA-39-5028-01 14 21052516 21052516 C - RNASE11 Frame_Shift_Del p.A40Qfs*13 0.09 TCGA-39-5028-01 14 21109188 21109188 G T OR6S1 Nonsense_Mutation p.Y221* 0.07 TCGA-39-5028-01 14 22102926 22102926 G T OR10G2 Missense_Mutation p.P25T 0.14 tolerated(0.07) benign(0.004) TCGA-39-5028-01 14 23512009 23512009 A T PSMB11 Missense_Mutation p.Y192F 0.22 deleterious(0.02) possibly_damaging(0.884) TCGA-39-5028-01 14 50092567 50092567 G A DNAAF2 Missense_Mutation p.S736F 0.09 tolerated(0.07) possibly_damaging(0.885) TCGA-39-5028-01 14 55618609 55618609 C A DLGAP5 Missense_Mutation p.M724I 0.20 tolerated(0.24) benign(0.004) TCGA-39-5028-01 14 69799873 69799873 A G GALNT16 Missense_Mutation p.T284A 0.21 deleterious(0.03) probably_damaging(0.998) TCGA-39-5028-01 14 73685865 73685865 C T PSEN1 Silent p.L424L 0.07 TCGA-39-5028-01 14 76633045 76633045 C G GPATCH2L Silent p.L234L 0.17 TCGA-39-5028-01 14 95590807 95590807 G C DICER1 Missense_Mutation p.L368V 0.12 tolerated(0.51) benign(0.376) TCGA-39-5028-01 15 22849171 22849171 G C TUBGCP5 Intron 0.09 TCGA-39-5028-01 15 42453899 42453899 T C VPS39 Missense_Mutation p.K845E 0.03 deleterious(0.03) benign(0.037) TCGA-39-5028-01 15 52510865 52510865 C G MYO5C Missense_Mutation p.E1269Q 0.25 tolerated(0.47) benign(0.009) TCGA-39-5028-01 15 54793157 54793157 T A UNC13C Nonsense_Mutation p.L1761* 0.19 TCGA-39-5028-01 15 72338400 72338400 G A MYO9A Missense_Mutation p.R169C 0.08 deleterious(0) probably_damaging(1) TCGA-39-5028-01 15 76452464 76452464 G A C15orf27 Silent p.V137V 0.07 TCGA-39-5028-01 15 85487987 85487987 G T SLC28A1 Missense_Mutation p.G588V 0.14 deleterious(0) probably_damaging(1) TCGA-39-5028-01 16 23614875 23614875 C G PALB2 Missense_Mutation p.D1156H 0.08 deleterious(0.03) benign(0.105) TCGA-39-5028-01 16 56660528 56660528 G A MT1E Intron 0.24 TCGA-39-5028-01 16 57778365 57778365 C G KATNB1 Silent p.L77L 0.08 TCGA-39-5028-01 16 87960375 87960375 C T CA5A Missense_Mutation p.D107N 0.17 tolerated(0.07) possibly_damaging(0.875) TCGA-39-5028-01 17 17701460 17701460 C T RAI1 Missense_Mutation p.S1733L 0.10 tolerated(0.26) benign(0.004) TCGA-39-5028-01 17 26942236 26942236 G C KIAA0100 Missense_Mutation p.S2185C 0.04 deleterious(0) benign(0.325) TCGA-39-5028-01 17 34311404 34311404 G C CCL14 Missense_Mutation p.T71S 0.15 deleterious(0.03) possibly_damaging(0.561) TCGA-39-5028-01 17 38447541 38447541 G C CDC6 Missense_Mutation p.R137T 0.08 tolerated(0.24) benign(0.001) TCGA-39-5028-01 17 40714598 40714598 C T COASY Intron 0.15 TCGA-39-5028-01 17 40714959 40714959 C T COASY Missense_Mutation p.L136F 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-39-5028-01 17 40843901 40843901 G A CNTNAP1 Missense_Mutation p.D808N 0.16 deleterious(0) probably_damaging(0.998) TCGA-39-5028-01 17 41246585 41246585 C A BRCA1 Missense_Mutation p.W321C 0.07 deleterious(0) probably_damaging(0.986) TCGA-39-5028-01 17 43515290 43515290 C A PLEKHM1 Silent p.V1035V 0.16 TCGA-39-5028-01 17 45682807 45682807 C T NPEPPS Missense_Mutation p.L662F 0.12 deleterious(0) probably_damaging(0.982) TCGA-39-5028-01 17 56569101 56569101 C A MTMR4 Nonsense_Mutation p.E1171* 0.15 TCGA-39-5028-01 17 73732131 73732131 G A ITGB4 Splice_Site p.X553_splice 0.05 TCGA-39-5028-01 17 74163754 74163754 C T RNF157 Missense_Mutation p.E141K 0.06 deleterious(0.01) possibly_damaging(0.874) TCGA-39-5028-01 17 7577105 7577105 G A TP53 Missense_Mutation p.P278L 0.10 deleterious(0) probably_damaging(1) TCGA-39-5028-01 17 7678290 7678290 A T DNAH2 Missense_Mutation p.Q1572L 0.16 benign(0.216) TCGA-39-5028-01 17 78165148 78165148 G C CARD14 Missense_Mutation p.Q372H 0.07 deleterious(0.04) benign(0.086) TCGA-39-5028-01 17 9792918 9792918 G T GLP2R Missense_Mutation p.D520Y 0.09 tolerated(0.07) benign(0.232) TCGA-39-5028-01 18 22932086 22932086 C T ZNF521 5'UTR 0.06 TCGA-39-5028-01 18 649934 649934 G C CLUL1 3'UTR 0.15 TCGA-39-5028-01 19 12962980 12962980 G T MAST1 Missense_Mutation p.A310S 0.10 deleterious(0) probably_damaging(1) TCGA-39-5028-01 19 14000131 14000131 C T C19orf57 Missense_Mutation p.R513Q 0.08 tolerated(0.57) benign(0.001) TCGA-39-5028-01 19 17950440 17950440 G A JAK3 Silent p.L429L 0.13 TCGA-39-5028-01 19 3740705 3740705 C G TJP3 Nonsense_Mutation p.S605* 0.09 TCGA-39-5028-01 19 39915990 39915990 C G PLEKHG2 3'UTR 0.16 TCGA-39-5028-01 19 40477127 40477127 C G PSMC4 Missense_Mutation p.I6M 0.06 deleterious_low_confidence(0) benign(0.372) TCGA-39-5028-01 19 42738713 42738713 A G GSK3A Missense_Mutation p.C262R 0.11 deleterious(0) probably_damaging(0.996) TCGA-39-5028-01 19 49933907 49933907 C A SLC17A7 Missense_Mutation p.G518C 0.14 tolerated(0.06) possibly_damaging(0.682) TCGA-39-5028-01 19 50213726 50213726 A G CPT1C Silent p.Q572Q 0.12 TCGA-39-5028-01 19 51629380 51629380 G A SIGLEC9 Missense_Mutation p.G248D 0.04 tolerated(0.2) benign(0.02) TCGA-39-5028-01 19 52521336 52521336 C G ZNF614 Missense_Mutation p.D55H 0.09 deleterious(0.02) benign(0.001) TCGA-39-5028-01 19 52619900 52619900 C A ZNF616 Missense_Mutation p.G173C 0.10 tolerated(0.11) benign(0.022) TCGA-39-5028-01 19 53885519 53885519 A G ZNF525 3'UTR 0.11 TCGA-39-5028-01 19 5776281 5776281 A G CATSPERD Missense_Mutation p.N684S 0.14 deleterious(0) probably_damaging(0.999) TCGA-39-5028-01 19 58963053 58963053 G A ZNF324B 5'UTR 0.22 TCGA-39-5028-01 19 8601411 8601411 G T MYO1F Missense_Mutation p.R624S 0.10 deleterious(0.02) possibly_damaging(0.84) TCGA-39-5028-01 1 10386311 10386311 G A KIF1B Missense_Mutation p.V894M 0.06 tolerated(0.29) probably_damaging(0.994) TCGA-39-5028-01 1 112998820 112998820 G C CTTNBP2NL Missense_Mutation p.E236Q 0.10 deleterious(0) probably_damaging(0.997) TCGA-39-5028-01 1 113655227 113655227 A C LRIG2 Missense_Mutation p.D642A 0.10 deleterious(0) possibly_damaging(0.696) TCGA-39-5028-01 1 1227009 1227009 G T SCNN1D 3'UTR 0.06 TCGA-39-5028-01 1 150551640 150551640 C T MCL1 Missense_Mutation p.E123K 0.10 deleterious(0.04) probably_damaging(0.91) TCGA-39-5028-01 1 155172145 155172145 G A THBS3 Silent p.T335T 0.13 TCGA-39-5028-01 1 155265360 155265361 - T PKLR Splice_Site p.X126_splice 0.22 TCGA-39-5028-01 1 158604375 158604375 C A SPTA1 Missense_Mutation p.L1841F 0.14 deleterious(0.01) benign(0.147) TCGA-39-5028-01 1 167088693 167088693 G A DUSP27 Silent p.L215L 0.15 TCGA-39-5028-01 1 183515449 183515449 C T SMG7 Missense_Mutation p.P861S 0.13 tolerated_low_confidence(0.41) benign(0.003) TCGA-39-5028-01 1 190129961 190129961 T C BRINP3 Missense_Mutation p.I341V 0.21 tolerated(0.42) benign(0.001) TCGA-39-5028-01 1 202718206 202718206 G A KDM5B Missense_Mutation p.S628F 0.08 deleterious(0) probably_damaging(0.999) TCGA-39-5028-01 1 213414815 213414815 G T RPS6KC1 Missense_Mutation p.D666Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-39-5028-01 1 228210542 228210542 C T WNT3A Silent p.R82R 0.12 TCGA-39-5028-01 1 247264358 247264358 C A ZNF669 Missense_Mutation p.R238I 0.09 deleterious(0) possibly_damaging(0.549) TCGA-39-5028-01 1 247902042 247902042 C A OR14K1 Silent p.V42V 0.18 TCGA-39-5028-01 1 248845350 248845350 G C OR14I1 Missense_Mutation p.R86G 0.22 deleterious(0.03) benign(0.001) TCGA-39-5028-01 1 24997916 24997918 AAG - SRRM1 In_Frame_Del p.K815del 0.27 TCGA-39-5028-01 1 54060199 54060199 G A GLIS1 Missense_Mutation p.S126L 0.08 deleterious_low_confidence(0.01) benign(0.035) TCGA-39-5028-01 1 62923246 62923246 G C DOCK7 Missense_Mutation p.Q2084E 0.09 tolerated(0.76) benign(0.03) TCGA-39-5028-01 1 89279257 89279257 G C PKN2 Missense_Mutation p.R707T 0.07 deleterious(0) probably_damaging(0.995) TCGA-39-5028-01 20 2398026 2398026 C T TGM6 Silent p.I495I 0.07 TCGA-39-5028-01 20 34535534 34535534 C T PHF20 Silent p.L1008L 0.15 TCGA-39-5028-01 20 4229246 4229246 G C ADRA1D Nonsense_Mutation p.S120* 0.10 TCGA-39-5028-01 20 47258974 47258974 G A PREX1 Missense_Mutation p.H1219Y 0.20 deleterious(0.02) possibly_damaging(0.794) TCGA-39-5028-01 20 54573773 54573773 G A CBLN4 Missense_Mutation p.A149V 0.13 deleterious(0) probably_damaging(1) TCGA-39-5028-01 20 60574149 60574149 C G TAF4 Missense_Mutation p.E935Q 0.06 possibly_damaging(0.721) TCGA-39-5028-01 21 46021273 46021273 A T KRTAP10-7 Missense_Mutation p.D251V 0.06 tolerated(0.31) unknown(0) TCGA-39-5028-01 21 47754334 47754334 G C PCNT Missense_Mutation p.K97N 0.04 possibly_damaging(0.788) TCGA-39-5028-01 22 20723782 20723782 G C USP41 Missense_Mutation p.N188K 0.04 tolerated(0.1) benign(0.193) TCGA-39-5028-01 22 20724481 20724481 G A USP41 Nonsense_Mutation p.Q137* 0.10 TCGA-39-5028-01 22 23101419 23101419 C T IGLV2-14 Nonsense_Mutation p.Q25* 0.07 TCGA-39-5028-01 22 31740795 31740795 C T PATZ1 Missense_Mutation p.R265Q 0.16 deleterious(0.02) possibly_damaging(0.86) TCGA-39-5028-01 22 32302600 32302600 G T DEPDC5 3'UTR 0.21 TCGA-39-5028-01 22 39832626 39832626 G A TAB1 3'Flank 0.05 TCGA-39-5028-01 2 101924926 101924926 A G RNF149 Missense_Mutation p.V42A 0.14 deleterious(0) probably_damaging(0.994) TCGA-39-5028-01 2 113676149 113676149 G A IL37 Silent p.L140L 0.06 TCGA-39-5028-01 2 122106203 122106203 G A CLASP1 Missense_Mutation p.T1433M 0.12 deleterious(0) probably_damaging(1) TCGA-39-5028-01 2 138414670 138414670 C A THSD7B Missense_Mutation p.L1442I 0.08 tolerated(0.44) unknown(0) TCGA-39-5028-01 2 152107863 152107863 G A RBM43 Missense_Mutation p.P211S 0.07 tolerated(0.11) possibly_damaging(0.586) TCGA-39-5028-01 2 1906860 1906860 T C MYT1L Missense_Mutation p.Y673C 0.06 deleterious(0.01) possibly_damaging(0.882) TCGA-39-5028-01 2 20462982 20462982 C G PUM2 Missense_Mutation p.E733Q 0.10 deleterious(0) probably_damaging(0.991) TCGA-39-5028-01 2 213291085 213291085 G C ERBB4 Intron 0.07 TCGA-39-5028-01 2 220371039 220371039 G T GMPPA Missense_Mutation p.V353L 0.24 deleterious(0) possibly_damaging(0.685) TCGA-39-5028-01 2 220404238 220404238 C T CHPF Missense_Mutation p.R732Q 0.05 tolerated(0.54) benign(0.174) TCGA-39-5028-01 2 241468504 241468504 G A ANKMY1 Silent p.I212I 0.09 TCGA-39-5028-01 2 27602971 27602971 C G ZNF513 Missense_Mutation p.R67T 0.04 tolerated(0.19) benign(0.227) TCGA-39-5028-01 2 44153051 44153051 C T LRPPRC Missense_Mutation p.R929K 0.38 tolerated(0.76) benign(0.006) TCGA-39-5028-01 2 44547771 44547771 C T SLC3A1 Missense_Mutation p.S684L 0.06 tolerated_low_confidence(0.66) benign(0.001) TCGA-39-5028-01 2 54147333 54147333 G A PSME4 Missense_Mutation p.S806F 0.21 deleterious(0) possibly_damaging(0.67) TCGA-39-5028-01 2 54147371 54147371 G C PSME4 Silent p.V793V 0.21 TCGA-39-5028-01 2 54147429 54147429 G A PSME4 Missense_Mutation p.S774L 0.25 tolerated(0.35) benign(0.001) TCGA-39-5028-01 2 61463362 61463362 C A USP34 Missense_Mutation p.W2284C 0.12 deleterious(0) probably_damaging(0.935) TCGA-39-5028-01 2 74043451 74043451 G C C2orf78 Missense_Mutation p.E701Q 0.11 tolerated(0.19) benign(0.056) TCGA-39-5028-01 2 79255446 79255446 C A REG3G 3'UTR 0.10 TCGA-39-5028-01 2 8871135 8871135 G A KIDINS220 Silent p.N1677N 0.07 TCGA-39-5028-01 2 89309925 89309925 C A IGKV1-9 Silent p.L10L 0.09 TCGA-39-5028-01 3 105260527 105260527 G A ALCAM Silent p.V303V 0.20 TCGA-39-5028-01 3 108475982 108475982 C T RETNLB Silent p.L17L 0.25 TCGA-39-5028-01 3 111632271 111632271 A G PHLDB2 Missense_Mutation p.K481E 0.17 tolerated(0.13) benign(0.081) TCGA-39-5028-01 3 111710348 111710348 C G ABHD10 Missense_Mutation p.P234R 0.19 tolerated(0.07) possibly_damaging(0.838) TCGA-39-5028-01 3 111849292 111849292 C T GCSAM Missense_Mutation p.R35K 0.08 deleterious(0.05) probably_damaging(0.969) TCGA-39-5028-01 3 125725472 125725472 C T SLC41A3 Intron 0.15 TCGA-39-5028-01 3 138174129 138174129 C T ESYT3 Silent p.L155L 0.16 TCGA-39-5028-01 3 141464056 141464056 G A RNF7 Silent p.V93V 0.09 TCGA-39-5028-01 3 180378361 180378361 G C CCDC39 Missense_Mutation p.I171M 0.15 deleterious(0) probably_damaging(0.952) TCGA-39-5028-01 3 189692409 189692409 G A LEPREL1 Missense_Mutation p.R464W 0.09 deleterious(0) probably_damaging(0.999) TCGA-39-5028-01 3 48453313 48453313 C T PLXNB1 Missense_Mutation p.D1736N 0.11 deleterious(0) probably_damaging(0.993) TCGA-39-5028-01 3 49314135 49314135 C T C3orf62 Silent p.S57S 0.08 TCGA-39-5028-01 3 50392684 50392684 C G TMEM115 3'UTR 0.20 TCGA-39-5028-01 3 96945212 96945212 G A EPHA6 Missense_Mutation p.E407K 0.06 tolerated(0.11) possibly_damaging(0.604) TCGA-39-5028-01 3 98311835 98311835 C T CPOX Missense_Mutation p.G172R 0.07 deleterious(0.04) benign(0.31) TCGA-39-5028-01 4 69811154 69811154 C A UGT2A3 Missense_Mutation p.C245F 0.15 tolerated(0.14) benign(0.33) TCGA-39-5028-01 4 71698953 71698953 A G GRSF1 Silent p.F184F 0.08 TCGA-39-5028-01 4 8583059 8583059 G A GPR78 Missense_Mutation p.R117H 0.29 deleterious(0.03) benign(0.223) TCGA-39-5028-01 4 8584304 8584304 G C GPR78 Missense_Mutation p.A239P 0.15 deleterious(0) probably_damaging(0.999) TCGA-39-5028-01 4 89571022 89571022 C G HERC3 Missense_Mutation p.I86M 0.04 deleterious(0) probably_damaging(0.999) TCGA-39-5028-01 4 99993574 99993574 C G ADH5 Missense_Mutation p.K373N 0.06 tolerated(0.47) benign(0.001) TCGA-39-5028-01 5 126883605 126883605 G C PRRC1 Missense_Mutation p.V374L 0.13 deleterious(0.03) possibly_damaging(0.544) TCGA-39-5028-01 5 139216784 139216784 C G PSD2 Missense_Mutation p.F542L 0.05 deleterious(0.03) probably_damaging(0.998) TCGA-39-5028-01 5 139622978 139622978 C G CYSTM1 Silent p.L92L 0.07 TCGA-39-5028-01 5 140012199 140012199 C G CD14 Missense_Mutation p.E124Q 0.07 tolerated(0.06) benign(0.095) TCGA-39-5028-01 5 140208509 140208509 C T PCDHA6 Missense_Mutation p.S278L 0.13 tolerated_low_confidence(0.37) benign(0.016) TCGA-39-5028-01 5 140856583 140856583 A T PCDHGC3 Silent p.V300V 0.11 TCGA-39-5028-01 5 151230968 151230968 G C GLRA1 Missense_Mutation p.R299G 0.10 deleterious(0.04) possibly_damaging(0.851) TCGA-39-5028-01 5 153149833 153149833 T A GRIA1 Missense_Mutation p.S720T 0.17 deleterious(0) possibly_damaging(0.497) TCGA-39-5028-01 5 157065554 157065554 G A SOX30 Missense_Mutation p.H522Y 0.07 tolerated(0.36) benign(0.146) TCGA-39-5028-01 5 158126103 158126103 C T EBF1 3'UTR 0.08 TCGA-39-5028-01 5 161128560 161128560 A G GABRA6 Missense_Mutation p.I381M 0.20 tolerated(0.13) benign(0.007) TCGA-39-5028-01 5 17354058 17354058 A G CTD-2139B15.2 RNA 0.13 TCGA-39-5028-01 5 178541089 178541089 G C ADAMTS2 Missense_Mutation p.P1139A 0.16 tolerated(0.08) benign(0.016) TCGA-39-5028-01 5 37001175 37001175 C T NIPBL Missense_Mutation p.A1220V 0.04 tolerated(0.1) benign(0.154) TCGA-39-5028-01 6 100061058 100061058 C A PRDM13 Missense_Mutation p.P183T 0.29 tolerated_low_confidence(0.05) benign(0.05) TCGA-39-5028-01 6 117586987 117586987 G T VGLL2 Missense_Mutation p.A21S 0.05 tolerated(0.07) benign(0.419) TCGA-39-5028-01 6 129826502 129826502 T A LAMA2 Splice_Site p.X2901_splice 0.22 TCGA-39-5028-01 6 29624966 29624966 C G MOG 5'Flank 0.05 TCGA-39-5028-01 6 30131596 30131596 G C TRIM15 Missense_Mutation p.Q45H 0.11 tolerated(0.11) benign(0.002) TCGA-39-5028-01 6 32905234 32905234 C A HLA-DMB Splice_Site p.X113_splice 0.15 TCGA-39-5028-01 6 36103596 36103596 G C MAPK13 Missense_Mutation p.E125D 0.16 tolerated(1) benign(0) TCGA-39-5028-01 6 38793996 38793996 G C DNAH8 Silent p.L1087L 0.19 TCGA-39-5028-01 6 56857268 56857268 C T BEND6 Silent p.C71C 0.05 TCGA-39-5028-01 6 70037782 70037782 G T BAI3 Splice_Site p.X1012_splice 0.17 TCGA-39-5028-01 6 71235668 71235668 A G FAM135A Missense_Mutation p.T961A 0.21 tolerated(1) benign(0.001) TCGA-39-5028-01 6 89967576 89967576 T C GABRR2 Missense_Mutation p.Q404R 0.08 tolerated(0.6) benign(0.345) TCGA-39-5028-01 7 100678647 100678647 C T MUC17 Missense_Mutation p.S1317L 0.15 unknown(0) TCGA-39-5028-01 7 100678759 100678759 C T MUC17 Silent p.I1354I 0.15 TCGA-39-5028-01 7 136938275 136938275 C T PTN Silent p.E75E 0.13 TCGA-39-5028-01 7 147259273 147259273 G C CNTNAP2 Missense_Mutation p.Q607H 0.10 tolerated(0.09) benign(0.001) TCGA-39-5028-01 7 14733769 14733769 C G DGKB Silent p.V214V 0.14 TCGA-39-5028-01 7 148515180 148515180 G C EZH2 Silent p.L343L 0.07 TCGA-39-5028-01 7 6026709 6026709 G A PMS2 Nonsense_Mutation p.R563* 0.12 TCGA-39-5028-01 7 7612335 7612335 C T MIOS Silent p.L77L 0.18 TCGA-39-5028-01 7 77325886 77325886 C T RSBN1L Missense_Mutation p.R34W 0.23 deleterious_low_confidence(0.02) possibly_damaging(0.835) TCGA-39-5028-01 7 77407731 77407731 C T RSBN1L Nonsense_Mutation p.Q624* 0.07 TCGA-39-5028-01 7 82584106 82584106 C T PCLO Missense_Mutation p.E2055K 0.18 unknown(0) TCGA-39-5028-01 7 82784553 82784553 C A PCLO Missense_Mutation p.K468N 0.08 possibly_damaging(0.702) TCGA-39-5028-01 7 92938172 92938172 G C CCDC132 Missense_Mutation p.E556Q 0.05 tolerated(0.17) benign(0.144) TCGA-39-5028-01 8 110131549 110131549 C G TRHR Nonsense_Mutation p.Y354* 0.27 TCGA-39-5028-01 8 113420573 113420573 G C CSMD3 Missense_Mutation p.A1860G 0.24 deleterious(0.03) possibly_damaging(0.696) TCGA-39-5028-01 8 121259908 121259908 C A COL14A1 Missense_Mutation p.R846S 0.12 deleterious(0.01) probably_damaging(1) TCGA-39-5028-01 8 144732358 144732358 C G ZNF623 Missense_Mutation p.L106V 0.05 tolerated(0.5) possibly_damaging(0.899) TCGA-39-5028-01 8 38880712 38880712 G C ADAM9 Missense_Mutation p.G261A 0.10 deleterious(0.03) probably_damaging(1) TCGA-39-5028-01 8 38880725 38880725 G C ADAM9 Missense_Mutation p.W265C 0.23 deleterious(0) probably_damaging(0.997) TCGA-39-5028-01 8 38880818 38880818 G C ADAM9 Silent p.R296R 0.13 TCGA-39-5028-01 8 55541754 55541754 C T RP1 Missense_Mutation p.S1771L 0.06 deleterious(0) probably_damaging(1) TCGA-39-5028-01 9 140174066 140174066 C T TOR4A Missense_Mutation p.R309C 0.36 deleterious(0) possibly_damaging(0.696) TCGA-39-5028-01 9 21971036 21971036 C T CDKN2A Missense_Mutation p.D108N 0.36 deleterious(0.03) probably_damaging(0.96) TCGA-39-5028-01 9 340232 340232 G C DOCK8 Silent p.V530V 0.06 TCGA-39-5028-01 9 84532656 84532656 T C SPATA31D5P RNA 0.07 TCGA-39-5028-01 9 99296825 99296825 C T CDC14B Splice_Site p.X210_splice 0.15 TCGA-39-5028-01 X 101139090 101139090 G T ZMAT1 Missense_Mutation p.H437N 0.38 tolerated(0.28) possibly_damaging(0.572) TCGA-39-5028-01 X 101911775 101911775 G T GPRASP1 Missense_Mutation p.E978D 0.38 deleterious(0.02) possibly_damaging(0.866) TCGA-39-5028-01 X 11204422 11204422 G C ARHGAP6 Missense_Mutation p.L403V 0.17 deleterious(0) probably_damaging(0.949) TCGA-39-5028-01 X 123224762 123224762 G T STAG2 Nonsense_Mutation p.E1176* 0.17 TCGA-39-5028-01 X 12939453 12939453 C A TLR8 Missense_Mutation p.S765Y 0.09 deleterious(0.01) possibly_damaging(0.793) TCGA-39-5028-01 X 132161299 132161299 G T USP26 Missense_Mutation p.P317Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-39-5028-01 X 151815469 151815469 G A GABRQ Missense_Mutation p.E123K 0.16 tolerated(0.06) probably_damaging(1) TCGA-39-5028-01 X 27998327 27998327 T A DCAF8L1 Silent p.V375V 0.24 TCGA-39-5028-01 X 27998340 27998340 T C DCAF8L1 Missense_Mutation p.E371G 0.16 deleterious(0.03) benign(0.184) TCGA-39-5029-01 10 104174911 104174911 C A PSD Missense_Mutation p.G278V 0.17 tolerated(0.06) probably_damaging(0.946) TCGA-39-5029-01 10 127524721 127524721 T A BCCIP Intron 0.15 TCGA-39-5029-01 10 129905711 129905711 C G MKI67 Missense_Mutation p.E1465Q 0.19 deleterious(0.01) probably_damaging(1) TCGA-39-5029-01 10 18250558 18250558 G T SLC39A12 Missense_Mutation p.D104Y 0.25 deleterious(0) possibly_damaging(0.707) TCGA-39-5029-01 10 18955518 18955519 - T ARL5B Frame_Shift_Ins p.V22Sfs*5 0.23 TCGA-39-5029-01 10 26377272 26377272 G T MYO3A Silent p.A500A 0.29 TCGA-39-5029-01 10 37438704 37438704 G T ANKRD30A Splice_Site p.X469_splice 0.22 TCGA-39-5029-01 10 47086886 47086886 C T NPY4R Nonsense_Mutation p.Q35* 0.04 TCGA-39-5029-01 10 50916591 50916591 T A C10orf53 Nonsense_Mutation p.C134* 0.09 TCGA-39-5029-01 10 55582055 55582055 G C PCDH15 Missense_Mutation p.L1813V 0.19 tolerated_low_confidence(0.09) unknown(0) TCGA-39-5029-01 10 74684033 74684033 C A OIT3 Missense_Mutation p.P333H 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-39-5029-01 11 105782633 105782633 G C GRIA4 Intron 0.30 TCGA-39-5029-01 11 124756583 124756583 C T ROBO4 Silent p.L857L 0.26 TCGA-39-5029-01 11 128680570 128680570 C T FLI1 Missense_Mutation p.T349I 0.15 deleterious(0) probably_damaging(0.998) TCGA-39-5029-01 11 18194896 18194896 G A MRGPRX4 Silent p.T31T 0.27 TCGA-39-5029-01 11 27395522 27395522 A C LGR4 Missense_Mutation p.L418R 0.21 deleterious(0.02) probably_damaging(1) TCGA-39-5029-01 11 48238741 48238741 C T OR4B1 Missense_Mutation p.P127L 0.32 deleterious(0.02) probably_damaging(1) TCGA-39-5029-01 11 5173278 5173278 T C OR52A1 Missense_Mutation p.T108A 0.08 tolerated(0.48) benign(0.007) TCGA-39-5029-01 11 55872975 55872975 T C OR8H2 Missense_Mutation p.F153L 0.25 tolerated(0.24) benign(0.168) TCGA-39-5029-01 11 56184866 56184866 C T OR5R1 Silent p.V281V 0.10 TCGA-39-5029-01 11 5730645 5730645 G C TRIM22 Missense_Mutation p.E422Q 0.08 tolerated(0.11) probably_damaging(0.993) TCGA-39-5029-01 11 6048128 6048128 G A OR56A1 Silent p.N269N 0.29 TCGA-39-5029-01 11 62287374 62287374 T C AHNAK Missense_Mutation p.M4839V 0.23 probably_damaging(0.986) TCGA-39-5029-01 11 71152283 71152283 C T DHCR7 Missense_Mutation p.A206T 0.34 tolerated(0.12) possibly_damaging(0.686) TCGA-39-5029-01 11 9200611 9200611 G A DENND5A Missense_Mutation p.R489C 0.25 tolerated(0.05) benign(0.004) TCGA-39-5029-01 12 27863870 27863870 G T MRPS35 Missense_Mutation p.V32F 0.33 tolerated_low_confidence(0.08) benign(0.021) TCGA-39-5029-01 12 32764098 32764098 T A FGD4 Missense_Mutation p.Y407N 0.14 deleterious(0.01) benign(0.119) TCGA-39-5029-01 12 57324196 57324196 T A SDR9C7 Missense_Mutation p.D125V 0.36 deleterious(0) probably_damaging(1) TCGA-39-5029-01 12 72274315 72274315 C G TBC1D15 Missense_Mutation p.L91V 0.12 tolerated(0.96) benign(0.007) TCGA-39-5029-01 13 25029274 25029274 C A PARP4 Missense_Mutation p.C880F 0.31 deleterious(0.01) probably_damaging(0.969) TCGA-39-5029-01 13 31035762 31035762 G C HMGB1 Intron 0.32 TCGA-39-5029-01 13 31036834 31036834 G T HMGB1 Silent p.L104L 0.40 TCGA-39-5029-01 13 49710725 49710725 A G FNDC3A Missense_Mutation p.T250A 0.29 tolerated(0.71) benign(0) TCGA-39-5029-01 13 66878656 66878656 T C PCDH9 3'UTR 0.19 TCGA-39-5029-01 14 100129256 100129256 C A HHIPL1 Missense_Mutation p.Q516K 0.24 tolerated(1) benign(0.004) TCGA-39-5029-01 14 107048909 107048909 C G IGHV3-53 Silent p.L37L 0.14 TCGA-39-5029-01 14 24546967 24546967 C T CPNE6 3'UTR 0.23 TCGA-39-5029-01 14 30066893 30066893 G A PRKD1 Silent p.T746T 0.40 TCGA-39-5029-01 14 64522939 64522939 C G SYNE2 Nonsense_Mutation p.S3341* 0.28 TCGA-39-5029-01 14 64608107 64608107 A G SYNE2 Missense_Mutation p.I5009V 0.32 benign(0.004) TCGA-39-5029-01 14 64625421 64625421 A G SYNE2 Missense_Mutation p.M5291V 0.21 benign(0.007) TCGA-39-5029-01 14 94594942 94594942 G C IFI27L2 Silent p.S36S 0.16 TCGA-39-5029-01 14 94745119 94745119 A G PPP4R4 3'UTR 0.09 TCGA-39-5029-01 14 94770791 94770791 G T SERPINA6 Missense_Mutation p.S394R 0.19 deleterious(0) probably_damaging(1) TCGA-39-5029-01 15 40599972 40599972 T A PLCB2 5'UTR 0.36 TCGA-39-5029-01 15 41523623 41523623 G C CHP1 Missense_Mutation p.E15Q 0.10 tolerated(0.39) benign(0.01) TCGA-39-5029-01 15 57730751 57730751 A G CGNL1 Missense_Mutation p.N185S 0.36 tolerated(0.82) benign(0.001) TCGA-39-5029-01 15 76496130 76496130 T C C15orf27 Missense_Mutation p.I357T 0.35 deleterious_low_confidence(0) benign(0.42) TCGA-39-5029-01 15 86262404 86262404 G T AKAP13 Missense_Mutation p.Q2037H 0.34 deleterious(0.03) probably_damaging(0.963) TCGA-39-5029-01 16 1820909 1820909 C T NME3 Missense_Mutation p.R122H 0.30 deleterious(0.02) probably_damaging(0.983) TCGA-39-5029-01 16 18846334 18846334 A G SMG1 Missense_Mutation p.V2737A 0.18 tolerated(0.75) benign(0.003) TCGA-39-5029-01 16 18870957 18870957 G A SMG1 Nonsense_Mutation p.Q1292* 0.32 TCGA-39-5029-01 16 19027840 19027840 C G TMC7 Missense_Mutation p.S127C 0.33 deleterious(0.04) possibly_damaging(0.5) TCGA-39-5029-01 16 20996734 20996734 C T DNAH3 Missense_Mutation p.A2444T 0.32 tolerated(1) benign(0.002) TCGA-39-5029-01 16 30080950 30080950 C T ALDOA Missense_Mutation p.A306V 0.20 deleterious(0.05) possibly_damaging(0.668) TCGA-39-5029-01 16 46943685 46943685 C T GPT2 Silent p.V222V 0.23 TCGA-39-5029-01 16 67709234 67709234 C T GFOD2 Missense_Mutation p.D328N 0.30 tolerated(0.51) benign(0.058) TCGA-39-5029-01 17 26099414 26099414 G T NOS2 Missense_Mutation p.L542I 0.28 tolerated(0.07) possibly_damaging(0.57) TCGA-39-5029-01 17 32963126 32963126 G A TMEM132E Missense_Mutation p.S603N 0.28 deleterious(0.03) benign(0.069) TCGA-39-5029-01 17 47656181 47656181 C T NXPH3 Missense_Mutation p.S93L 0.21 tolerated(0.07) benign(0.062) TCGA-39-5029-01 17 54926589 54926589 C T DGKE Missense_Mutation p.P365L 0.11 tolerated(0.11) benign(0.016) TCGA-39-5029-01 17 73811302 73811302 G T UNK Missense_Mutation p.R310L 0.25 deleterious(0) probably_damaging(0.999) TCGA-39-5029-01 17 75398373 75398373 G T SEPT9 Silent p.P103P 0.20 TCGA-39-5029-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.29 TCGA-39-5029-01 18 32464725 32464725 A G DTNA Intron 0.25 TCGA-39-5029-01 18 39593460 39593460 G A PIK3C3 Missense_Mutation p.D409N 0.08 tolerated(0.25) benign(0.005) TCGA-39-5029-01 18 47792749 47792749 A G CCDC11 Missense_Mutation p.V9A 0.20 tolerated(0.1) benign(0.038) TCGA-39-5029-01 18 909481 909481 G A ADCYAP1 Missense_Mutation p.E126K 0.30 tolerated(0.09) benign(0.009) TCGA-39-5029-01 19 11527689 11527689 G A RGL3 Silent p.S64S 0.37 TCGA-39-5029-01 19 13616887 13616887 G T CACNA1A Nonsense_Mutation p.S51* 0.17 TCGA-39-5029-01 19 18277041 18277041 G C PIK3R2 Missense_Mutation p.Q496H 0.35 tolerated(0.26) benign(0.008) TCGA-39-5029-01 19 33698458 33698458 G T LRP3 Missense_Mutation p.D764Y 0.21 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-39-5029-01 19 40519754 40519754 G A ZNF546 Missense_Mutation p.V193I 0.25 tolerated(0.5) benign(0) TCGA-39-5029-01 19 47151566 47151566 C G DACT3 3'UTR 0.24 TCGA-39-5029-01 19 51132654 51132654 G A SYT3 Missense_Mutation p.S393L 0.43 deleterious(0) probably_damaging(0.961) TCGA-39-5029-01 19 57133481 57133481 G T ZNF71 Missense_Mutation p.G276W 0.46 deleterious(0) probably_damaging(1) TCGA-39-5029-01 19 847957 847957 G A PRTN3 Silent p.K253K 0.25 TCGA-39-5029-01 1 1235355 1235355 C T ACAP3 Missense_Mutation p.E221K 0.15 tolerated(0.06) benign(0.296) TCGA-39-5029-01 1 155156413 155156413 G T TRIM46 Missense_Mutation p.R676M 0.41 deleterious(0) possibly_damaging(0.689) TCGA-39-5029-01 1 158151513 158151513 T C CD1D Splice_Site p.X110_splice 0.32 TCGA-39-5029-01 1 161168117 161168117 C G ADAMTS4 Missense_Mutation p.G101R 0.31 tolerated(0.18) probably_damaging(0.948) TCGA-39-5029-01 1 179084073 179084073 C A ABL2 Nonsense_Mutation p.G501* 0.22 TCGA-39-5029-01 1 207737501 207737501 G C CR1 Missense_Mutation p.G1263A 0.10 tolerated(0.18) possibly_damaging(0.834) TCGA-39-5029-01 1 216850454 216850454 C T ESRRG Missense_Mutation p.E151K 0.08 deleterious(0.03) possibly_damaging(0.58) TCGA-39-5029-01 1 2290142 2290142 C A MORN1 Missense_Mutation p.R253L 0.60 deleterious(0) probably_damaging(1) TCGA-39-5029-01 1 242287914 242287914 T C PLD5 Silent p.L263L 0.21 TCGA-39-5029-01 1 37324827 37324827 G A GRIK3 Missense_Mutation p.A329V 0.47 deleterious(0) probably_damaging(0.927) TCGA-39-5029-01 1 39797830 39797830 G A MACF1 Intron 0.49 TCGA-39-5029-01 1 57224416 57224416 A G C1orf168 Silent p.Y357Y 0.31 TCGA-39-5029-01 1 74648474 74648474 A G LRRIQ3 Silent p.N107N 0.28 TCGA-39-5029-01 20 10622443 10622443 G A JAG1 Silent p.I890I 0.14 TCGA-39-5029-01 20 13782282 13782282 G A NDUFAF5 Missense_Mutation p.D224N 0.20 deleterious(0) probably_damaging(1) TCGA-39-5029-01 20 30616874 30616874 G C CCM2L Silent p.A382A 0.11 TCGA-39-5029-01 20 48808476 48808476 G A CEBPB Silent p.K302K 0.22 TCGA-39-5029-01 21 31768611 31768611 C T KRTAP13-1 Silent p.S69S 0.39 TCGA-39-5029-01 21 31768915 31768915 T C KRTAP13-1 Missense_Mutation p.Y171H 0.27 tolerated(0.05) benign(0.167) TCGA-39-5029-01 21 44837498 44837498 C T SIK1 Missense_Mutation p.S634N 0.27 tolerated_low_confidence(0.68) possibly_damaging(0.516) TCGA-39-5029-01 21 47783431 47783431 C G PCNT Missense_Mutation p.L731V 0.26 possibly_damaging(0.636) TCGA-39-5029-01 22 26304368 26304368 T C MYO18B Missense_Mutation p.L1743P 0.40 deleterious(0) probably_damaging(0.991) TCGA-39-5029-01 2 100938034 100938034 C A LONRF2 Silent p.P174P 0.26 TCGA-39-5029-01 2 105858749 105858749 C T GPR45 Missense_Mutation p.P145L 0.26 tolerated(0.09) benign(0.051) TCGA-39-5029-01 2 109100746 109100746 G C GCC2 Missense_Mutation p.E1198Q 0.09 tolerated(0.08) probably_damaging(0.994) TCGA-39-5029-01 2 125281905 125281905 G C CNTNAP5 Missense_Mutation p.W450C 0.16 deleterious(0) probably_damaging(1) TCGA-39-5029-01 2 135659432 135659432 T G ACMSD 3'UTR 0.16 TCGA-39-5029-01 2 141356255 141356255 G A LRP1B Missense_Mutation p.S2380L 0.28 benign(0.307) TCGA-39-5029-01 2 152522861 152522861 T G NEB Missense_Mutation p.S1592R 0.31 probably_damaging(0.998) TCGA-39-5029-01 2 164466052 164466052 A G FIGN 3'UTR 0.04 TCGA-39-5029-01 2 179434007 179434007 C - TTN Frame_Shift_Del p.V25618Yfs*16 0.25 TCGA-39-5029-01 2 179642226 179642226 G A TTN Silent p.P1522P 0.25 TCGA-39-5029-01 2 179648821 179648821 T C TTN Silent p.E917E 0.24 TCGA-39-5029-01 2 238283095 238283095 C G COL6A3 Silent p.L1213L 0.40 TCGA-39-5029-01 2 242036818 242036818 C G MTERFD2 Missense_Mutation p.C182S 0.28 tolerated(0.41) benign(0.05) TCGA-39-5029-01 2 26418042 26418042 C G HADHA Silent p.T513T 0.32 TCGA-39-5029-01 2 27480855 27480855 C T SLC30A3 Missense_Mutation p.V166I 0.32 tolerated(0.15) benign(0) TCGA-39-5029-01 2 27672642 27672642 T C IFT172 Missense_Mutation p.D1359G 0.33 deleterious(0) benign(0.444) TCGA-39-5029-01 2 48898756 48898756 T A STON1-GTF2A1L Silent p.V1126V 0.12 TCGA-39-5029-01 2 65217264 65217264 G A SLC1A4 Missense_Mutation p.V163I 0.19 tolerated(0.26) benign(0.002) TCGA-39-5029-01 2 6989779 6989779 T C CMPK2 3'UTR 0.33 TCGA-39-5029-01 2 74760964 74760964 C T LOXL3 Intron 0.30 TCGA-39-5029-01 2 90229083 90229083 G C IGKV1D-42 Missense_Mutation p.A7P 0.13 deleterious(0.02) benign(0.003) TCGA-39-5029-01 3 112267419 112267419 C T ATG3 Missense_Mutation p.D102N 0.15 deleterious(0.02) probably_damaging(0.952) TCGA-39-5029-01 3 118917955 118917955 G T UPK1B Missense_Mutation p.A234S 0.35 tolerated(0.99) benign(0.045) TCGA-39-5029-01 3 130290112 130290112 C A COL6A6 Missense_Mutation p.A951D 0.24 deleterious(0) probably_damaging(1) TCGA-39-5029-01 3 131102049 131102049 G A NUDT16 3'UTR 0.19 TCGA-39-5029-01 3 132235581 132235581 A G DNAJC13 Missense_Mutation p.N1865S 0.18 tolerated(0.09) benign(0.17) TCGA-39-5029-01 3 52019412 52019412 G A ACY1 Nonsense_Mutation p.W65* 0.04 TCGA-39-5029-01 3 9036101 9036101 C T SRGAP3 Silent p.S778S 0.23 TCGA-39-5029-01 4 119273413 119273413 G T PRSS12 Missense_Mutation p.R155S 0.29 tolerated(1) benign(0.008) TCGA-39-5029-01 4 55602936 55602936 G A KIT Missense_Mutation p.M882I 0.20 deleterious(0.01) probably_damaging(0.957) TCGA-39-5029-01 4 56448312 56448312 C G PDCL2 Missense_Mutation p.M33I 0.23 tolerated(0.3) benign(0.338) TCGA-39-5029-01 4 84358185 84358185 T C HELQ Missense_Mutation p.N625S 0.27 tolerated(0.44) benign(0.004) TCGA-39-5029-01 4 87684053 87684053 A C PTPN13 Missense_Mutation p.S1243R 0.30 deleterious(0.03) probably_damaging(0.994) TCGA-39-5029-01 4 89385004 89385004 A G HERC5 Splice_Site p.X261_splice 0.24 TCGA-39-5029-01 5 10286472 10286472 C T CMBL Missense_Mutation p.V154I 0.14 tolerated(0.2) benign(0.013) TCGA-39-5029-01 5 114469806 114469806 C A TRIM36 Missense_Mutation p.V429F 0.30 tolerated(0.14) possibly_damaging(0.529) TCGA-39-5029-01 5 128362850 128362850 G C SLC27A6 Missense_Mutation p.R427P 0.29 tolerated(0.21) benign(0.011) TCGA-39-5029-01 5 140553062 140553062 G A PCDHB7 Missense_Mutation p.D216N 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-39-5029-01 5 140783976 140783976 G A PCDHGA9 Missense_Mutation p.R486K 0.33 tolerated_low_confidence(0.08) benign(0.039) TCGA-39-5029-01 5 176304243 176304243 G A UNC5A Missense_Mutation p.E477K 0.36 deleterious(0) probably_damaging(0.998) TCGA-39-5029-01 5 5146420 5146420 T C ADAMTS16 Missense_Mutation p.L118P 0.44 deleterious(0) probably_damaging(0.996) TCGA-39-5029-01 6 161510413 161510413 T G MAP3K4 Silent p.A961A 0.20 TCGA-39-5029-01 6 3155931 3155931 C T TUBB2A Missense_Mutation p.E69K 0.37 deleterious_low_confidence(0.01) benign(0.151) TCGA-39-5029-01 6 47253871 47253871 C A TNFRSF21 Missense_Mutation p.C186F 0.33 deleterious(0) probably_damaging(1) TCGA-39-5029-01 6 51918945 51918945 C T PKHD1 Missense_Mutation p.G619S 0.23 deleterious(0.03) possibly_damaging(0.45) TCGA-39-5029-01 6 54025338 54025338 C A MLIP Missense_Mutation p.Q259K 0.20 tolerated(0.05) benign(0.058) TCGA-39-5029-01 6 97339016 97339016 G A NDUFAF4 Silent p.F164F 0.21 TCGA-39-5029-01 7 100377230 100377230 G T ZAN Silent p.T2159T 0.29 TCGA-39-5029-01 7 100677564 100677564 C A MUC17 Missense_Mutation p.T956N 0.16 probably_damaging(0.995) TCGA-39-5029-01 7 100677565 100677565 C A MUC17 Silent p.T956T 0.16 TCGA-39-5029-01 7 101747623 101747623 G C CUX1 Silent p.T149T 0.20 TCGA-39-5029-01 7 107599895 107599895 T C LAMB1 Missense_Mutation p.N830S 0.21 tolerated(1) benign(0.002) TCGA-39-5029-01 7 112535725 112535725 T A C7orf60 Silent p.V124V 0.22 TCGA-39-5029-01 7 117874559 117874559 T C ANKRD7 Missense_Mutation p.I85T 0.24 deleterious(0) possibly_damaging(0.723) TCGA-39-5029-01 7 123593967 123593967 C T SPAM1 Missense_Mutation p.P115S 0.29 deleterious(0) probably_damaging(1) TCGA-39-5029-01 7 137590525 137590525 G A CREB3L2 Missense_Mutation p.P280S 0.30 deleterious(0) probably_damaging(0.994) TCGA-39-5029-01 7 151878809 151878809 G T KMT2C Missense_Mutation p.P2046T 0.34 probably_damaging(0.999) TCGA-39-5029-01 7 20180437 20180437 C A MACC1 3'UTR 0.39 TCGA-39-5029-01 7 38254705 38254705 C T STARD3NL Missense_Mutation p.A127V 0.50 deleterious(0.05) probably_damaging(0.972) TCGA-39-5029-01 7 43840098 43840098 G C BLVRA Missense_Mutation p.L129F 0.36 tolerated(0.07) benign(0.012) TCGA-39-5029-01 7 71175889 71175889 G A WBSCR17 Silent p.L548L 0.16 TCGA-39-5029-01 7 73111966 73111966 G A WBSCR22 Missense_Mutation p.V262M 0.09 tolerated(0.11) benign(0.389) TCGA-39-5029-01 7 92905597 92905597 C T CCDC132 Nonsense_Mutation p.Q308* 0.29 TCGA-39-5029-01 8 121483082 121483082 C T MTBP Missense_Mutation p.P357L 0.10 deleterious(0) probably_damaging(0.988) TCGA-39-5029-01 8 124664915 124664915 G A KLHL38 Silent p.T84T 0.39 TCGA-39-5029-01 8 145582909 145582909 G T SLC52A2 5'UTR 0.39 TCGA-39-5029-01 8 145697332 145697332 G C KIFC2 Missense_Mutation p.R463T 0.35 tolerated(0.09) possibly_damaging(0.816) TCGA-39-5029-01 8 145697404 145697404 G A KIFC2 Missense_Mutation p.G487D 0.34 deleterious(0) probably_damaging(1) TCGA-39-5029-01 8 145773748 145773748 C T ARHGAP39 Missense_Mutation p.R241H 0.14 tolerated(0.28) benign(0.029) TCGA-39-5029-01 8 3165292 3165292 G T CSMD1 Missense_Mutation p.P1292H 0.44 probably_damaging(0.992) TCGA-39-5029-01 8 38913123 38913123 G A ADAM9 Missense_Mutation p.G475R 0.08 tolerated(0.19) possibly_damaging(0.703) TCGA-39-5029-01 8 53586413 53586413 T A RB1CC1 Missense_Mutation p.M332L 0.39 tolerated(0.72) possibly_damaging(0.904) TCGA-39-5029-01 8 85097158 85097158 G T RALYL 5'UTR 0.17 TCGA-39-5029-01 8 88884955 88884955 G A DCAF4L2 3'UTR 0.12 TCGA-39-5029-01 9 104048410 104048410 T C LPPR1 Missense_Mutation p.Y93H 0.29 deleterious(0.02) possibly_damaging(0.853) TCGA-39-5029-01 9 104048506 104048506 A G LPPR1 Missense_Mutation p.I125V 0.33 tolerated(1) benign(0) TCGA-39-5029-01 9 116049074 116049074 G A PRPF4 Missense_Mutation p.A301T 0.35 tolerated(0.33) possibly_damaging(0.447) TCGA-39-5029-01 9 131030746 131030746 C A GOLGA2 Missense_Mutation p.G89C 0.30 tolerated(0.1) benign(0.421) TCGA-39-5029-01 X 135758808 135758808 C T ARHGEF6 Silent p.S640S 0.36 TCGA-39-5029-01 X 142795447 142795447 G A SPANXN2 Silent p.S77S 0.27 TCGA-39-5029-01 X 31341742 31341742 G A DMD Missense_Mutation p.S3066L 0.38 benign(0.439) TCGA-39-5029-01 X 66943546 66943546 C A AR Missense_Mutation p.Q876K 0.49 deleterious(0.03) probably_damaging(0.981) TCGA-39-5029-01 X 71932781 71932781 T C PHKA1 Splice_Site p.X27_splice 0.52 TCGA-39-5029-01 X 75003366 75003366 C A MAGEE2 Missense_Mutation p.E507D 0.42 tolerated(0.13) probably_damaging(0.97) TCGA-39-5029-01 Y 6115610 6115610 A G TSPY2 Missense_Mutation p.E191G 0.19 tolerated(0.14) possibly_damaging(0.838) TCGA-39-5030-01 10 129910038 129910038 C T MKI67 Missense_Mutation p.A711T 0.08 deleterious(0) probably_damaging(0.996) TCGA-39-5030-01 10 135106715 135106715 C T TUBGCP2 Silent p.E312E 0.08 TCGA-39-5030-01 10 14939354 14939354 C A SUV39H2 Nonsense_Mutation p.C229* 0.09 TCGA-39-5030-01 10 6504316 6504316 G A PRKCQ Missense_Mutation p.A486V 0.10 deleterious(0.03) possibly_damaging(0.516) TCGA-39-5030-01 11 107923528 107923528 G A CUL5 Missense_Mutation p.V185I 0.11 tolerated(0.11) possibly_damaging(0.514) TCGA-39-5030-01 11 124743608 124743608 C T ROBO3 Missense_Mutation p.S545L 0.12 tolerated(0.48) benign(0.008) TCGA-39-5030-01 11 128781427 128781427 C T KCNJ5 Missense_Mutation p.R87C 0.07 deleterious(0) probably_damaging(0.979) TCGA-39-5030-01 11 17153558 17153558 T C PIK3C2A Silent p.S712S 0.05 TCGA-39-5030-01 11 32118747 32118747 G C RCN1 Silent p.L104L 0.11 TCGA-39-5030-01 11 4608686 4608686 C T OR52I2 Missense_Mutation p.A215V 0.07 tolerated(0.57) benign(0.107) TCGA-39-5030-01 11 46920945 46920945 C A LRP4 Missense_Mutation p.E180D 0.05 tolerated(0.58) benign(0.041) TCGA-39-5030-01 11 5221786 5221786 A G OR51V1 Silent p.L49L 0.04 TCGA-39-5030-01 11 58893237 58893237 C T FAM111B Missense_Mutation p.A556V 0.08 tolerated(0.06) benign(0.441) TCGA-39-5030-01 11 61067618 61067618 C T DDB1 Missense_Mutation p.R1138Q 0.17 tolerated(0.09) probably_damaging(0.999) TCGA-39-5030-01 11 61205522 61205522 A G SDHAF2 Missense_Mutation p.N103D 0.05 tolerated(0.44) possibly_damaging(0.725) TCGA-39-5030-01 11 61897526 61897526 G C INCENP Missense_Mutation p.R176P 0.14 deleterious(0) unknown(0) TCGA-39-5030-01 11 65635415 65635415 T C EFEMP2 Missense_Mutation p.I363V 0.12 deleterious(0.01) probably_damaging(0.995) TCGA-39-5030-01 11 8016879 8016879 G C EIF3F Missense_Mutation p.D321H 0.08 deleterious(0.03) probably_damaging(0.981) TCGA-39-5030-01 11 94731334 94731334 G A KDM4D Silent p.Q266Q 0.05 TCGA-39-5030-01 12 104378655 104378655 C T TDG Silent p.D307D 0.05 TCGA-39-5030-01 12 105536924 105536924 G A KIAA1033 Missense_Mutation p.R638H 0.06 deleterious(0.05) possibly_damaging(0.647) TCGA-39-5030-01 12 108169097 108169097 C - ASCL4 Frame_Shift_Del p.L37Sfs*53 0.10 TCGA-39-5030-01 12 121746350 121746350 G A ANAPC5 Missense_Mutation p.A734V 0.10 deleterious(0) possibly_damaging(0.802) TCGA-39-5030-01 12 122016728 122016728 C T KDM2B Missense_Mutation p.V84M 0.09 deleterious(0) probably_damaging(0.92) TCGA-39-5030-01 12 13243687 13243687 T C GSG1 Silent p.S38S 0.04 TCGA-39-5030-01 12 133331494 133331494 C A ANKLE2 Missense_Mutation p.R136M 0.08 deleterious(0.04) possibly_damaging(0.784) TCGA-39-5030-01 12 1889659 1889659 G T ADIPOR2 Missense_Mutation p.R169L 0.11 deleterious(0.04) benign(0.342) TCGA-39-5030-01 12 21487604 21487604 G T SLCO1A2 5'UTR 0.04 TCGA-39-5030-01 12 49421039 49421039 G A KMT2D Nonsense_Mutation p.R4904* 0.04 TCGA-39-5030-01 12 56078904 56078904 G T ITGA7 Missense_Mutation p.L1122M 0.12 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-39-5030-01 12 57593149 57593149 C T LRP1 Silent p.D3277D 0.03 TCGA-39-5030-01 12 9265040 9265040 C A A2M Missense_Mutation p.M121I 0.09 tolerated(0.05) benign(0) TCGA-39-5030-01 12 94965417 94965417 G C TMCC3 Missense_Mutation p.L410V 0.06 deleterious(0.02) probably_damaging(0.997) TCGA-39-5030-01 12 94965482 94965482 G A TMCC3 Missense_Mutation p.S388F 0.10 deleterious(0.02) benign(0.038) TCGA-39-5030-01 13 50280449 50280449 T C KPNA3 Silent p.V364V 0.05 TCGA-39-5030-01 13 99364785 99364785 C A SLC15A1 Missense_Mutation p.E259D 0.12 tolerated(0.16) benign(0.049) TCGA-39-5030-01 14 50550460 50550460 C G C14orf183 Missense_Mutation p.W295S 0.11 unknown(0) TCGA-39-5030-01 14 53619565 53619565 G A DDHD1 Silent p.L84L 0.14 TCGA-39-5030-01 14 64898281 64898281 C T MTHFD1 Missense_Mutation p.A448V 0.05 deleterious(0.01) possibly_damaging(0.869) TCGA-39-5030-01 14 94848957 94848957 A - SERPINA1 Frame_Shift_Del p.F206Lfs*4 0.09 TCGA-39-5030-01 14 97018866 97018866 A C PAPOLA Missense_Mutation p.D524A 0.05 tolerated(0.09) benign(0.031) TCGA-39-5030-01 15 42710039 42710039 G A ZNF106 Silent p.C1853C 0.09 TCGA-39-5030-01 15 49882125 49882125 G A FAM227B Missense_Mutation p.S62L 0.09 tolerated(0.06) probably_damaging(0.988) TCGA-39-5030-01 15 65682603 65682603 G A IGDCC4 Silent p.I766I 0.07 TCGA-39-5030-01 15 67358513 67358513 C T SMAD3 Silent p.F7F 0.18 TCGA-39-5030-01 15 79339219 79339219 C T RASGRF1 Silent p.L249L 0.10 TCGA-39-5030-01 15 85327190 85327190 G T ZNF592 Silent p.V428V 0.06 TCGA-39-5030-01 16 15814831 15814831 C A MYH11 Missense_Mutation p.E1559D 0.08 probably_damaging(0.997) TCGA-39-5030-01 16 24980023 24980023 C T ARHGAP17 Missense_Mutation p.V115I 0.06 tolerated(0.53) benign(0.035) TCGA-39-5030-01 16 29922394 29922394 C T KCTD13 Missense_Mutation p.E220K 0.10 deleterious(0) probably_damaging(0.93) TCGA-39-5030-01 16 53844090 53844090 C T FTO Silent p.L28L 0.09 TCGA-39-5030-01 16 67943531 67943531 C T PSKH1 Silent p.G293G 0.06 TCGA-39-5030-01 16 784148 784148 T G NARFL Intron 0.12 TCGA-39-5030-01 16 86601394 86601394 C A FOXC2 Missense_Mutation p.D151E 0.09 deleterious(0.05) probably_damaging(0.994) TCGA-39-5030-01 16 87443942 87443942 C A ZCCHC14 Splice_Site p.X932_splice 0.08 TCGA-39-5030-01 17 12883479 12883479 G C ARHGAP44 Missense_Mutation p.G623A 0.21 tolerated(0.2) benign(0) TCGA-39-5030-01 17 15907564 15907564 C G TTC19 Missense_Mutation p.A190G 0.08 deleterious(0.04) benign(0.269) TCGA-39-5030-01 17 26518101 26518101 C T NLK Nonsense_Mutation p.R431* 0.07 TCGA-39-5030-01 17 27066122 27066122 G A NEK8 Silent p.L440L 0.04 TCGA-39-5030-01 17 39017927 39017927 C G KRT12 Missense_Mutation p.E491Q 0.07 deleterious(0.01) unknown(0) TCGA-39-5030-01 17 41570888 41570888 G C DHX8 Silent p.V313V 0.08 TCGA-39-5030-01 17 45915402 45915402 G A SCRN2 Intron 0.07 TCGA-39-5030-01 17 47304062 47304062 C T PHOSPHO1 5'UTR 0.10 TCGA-39-5030-01 17 47482457 47482457 C T PHB Missense_Mutation p.R239H 0.14 tolerated(0.06) benign(0.017) TCGA-39-5030-01 17 48458295 48458295 G C EME1 Missense_Mutation p.D583H 0.05 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-39-5030-01 17 48917580 48917580 G T WFIKKN2 Missense_Mutation p.A311S 0.11 tolerated(0.72) benign(0.001) TCGA-39-5030-01 17 74308994 74308994 G C PRPSAP1 Missense_Mutation p.S319C 0.11 deleterious(0) probably_damaging(0.997) TCGA-39-5030-01 17 8049287 8049287 G T PER1 Missense_Mutation p.P736H 0.11 deleterious(0) probably_damaging(0.993) TCGA-39-5030-01 18 20768804 20768804 G A CABLES1 Missense_Mutation p.R283Q 0.07 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-39-5030-01 18 40323632 40323632 A - RIT2 Frame_Shift_Del p.F160Lfs*18 0.11 TCGA-39-5030-01 18 59483590 59483590 G A RNF152 Missense_Mutation p.S36L 0.12 tolerated(0.25) probably_damaging(0.991) TCGA-39-5030-01 18 74962959 74962959 C T GALR1 Missense_Mutation p.A152V 0.10 deleterious(0) possibly_damaging(0.879) TCGA-39-5030-01 19 1090909 1090909 C T POLR2E Missense_Mutation p.E143K 0.10 tolerated(0.71) benign(0.223) TCGA-39-5030-01 19 14522397 14522397 A G DDX39A Missense_Mutation p.V117A 0.09 deleterious(0.02) possibly_damaging(0.892) TCGA-39-5030-01 19 16035633 16035633 G A CYP4F11 Silent p.I195I 0.09 TCGA-39-5030-01 19 18329276 18329276 T G PDE4C Silent p.P366P 0.16 TCGA-39-5030-01 19 19625912 19625912 C T TSSK6 Missense_Mutation p.G109R 0.08 tolerated(0.12) benign(0.278) TCGA-39-5030-01 19 3061229 3061229 G C AES Silent p.L85L 0.07 TCGA-39-5030-01 19 31769840 31769840 G T TSHZ3 Missense_Mutation p.L287M 0.04 deleterious(0) probably_damaging(0.999) TCGA-39-5030-01 19 35642326 35642329 TCTC - FXYD7 Intron 0.11 TCGA-39-5030-01 19 36239509 36239509 G A LIN37 5'UTR 0.24 TCGA-39-5030-01 19 39998898 39998898 C T DLL3 3'UTR 0.06 TCGA-39-5030-01 19 43523150 43523150 C T PSG11 Missense_Mutation p.A161T 0.05 tolerated(0.15) benign(0.082) TCGA-39-5030-01 19 50046438 50046438 G A RCN3 Missense_Mutation p.E319K 0.06 deleterious(0) possibly_damaging(0.791) TCGA-39-5030-01 19 52519532 52519532 C T ZNF614 Missense_Mutation p.R440H 0.04 tolerated(0.22) benign(0.002) TCGA-39-5030-01 19 55708603 55708603 C A PTPRH Missense_Mutation p.R624S 0.15 benign(0.145) TCGA-39-5030-01 19 5711826 5711826 C G LONP1 Missense_Mutation p.E276Q 0.06 deleterious(0.05) probably_damaging(0.913) TCGA-39-5030-01 19 57765668 57765668 G A ZNF805 Missense_Mutation p.R494H 0.12 tolerated(0.11) possibly_damaging(0.516) TCGA-39-5030-01 19 58849911 58849911 C T ZSCAN22 Missense_Mutation p.A232V 0.06 tolerated(0.69) benign(0) TCGA-39-5030-01 19 58966636 58966636 G A ZNF324B Missense_Mutation p.V109I 0.06 tolerated(0.23) benign(0.001) TCGA-39-5030-01 19 6828713 6828713 G C VAV1 Missense_Mutation p.E391D 0.08 deleterious(0.03) possibly_damaging(0.528) TCGA-39-5030-01 19 9065822 9065822 G T MUC16 Silent p.A7208A 0.09 TCGA-39-5030-01 1 109177804 109177804 A G FAM102B 3'UTR 0.05 TCGA-39-5030-01 1 110765655 110765655 G A KCNC4 Missense_Mutation p.A250T 0.05 tolerated(0.07) possibly_damaging(0.531) TCGA-39-5030-01 1 111889268 111889268 G A PIFO 5'UTR 0.08 TCGA-39-5030-01 1 116206498 116206498 G A VANGL1 Missense_Mutation p.E141K 0.08 tolerated(0.53) benign(0.009) TCGA-39-5030-01 1 147096108 147096108 G T BCL9 Missense_Mutation p.S1210I 0.05 deleterious(0.04) benign(0.121) TCGA-39-5030-01 1 150598102 150598102 G - ENSA Intron 0.11 TCGA-39-5030-01 1 153932959 153932959 G A SLC39A1 Missense_Mutation p.A197V 0.10 deleterious(0) probably_damaging(0.988) TCGA-39-5030-01 1 155263347 155263347 G A PKLR Missense_Mutation p.T384M 0.24 deleterious(0) probably_damaging(1) TCGA-39-5030-01 1 155838391 155838391 G C SYT11 Missense_Mutation p.D224H 0.06 deleterious(0) probably_damaging(1) TCGA-39-5030-01 1 155912482 155912482 C A RXFP4 Silent p.R328R 0.11 TCGA-39-5030-01 1 158912017 158912017 G A PYHIN1 Missense_Mutation p.R277H 0.18 tolerated(0.53) benign(0) TCGA-39-5030-01 1 160260349 160260349 T C COPA Missense_Mutation p.E1192G 0.15 deleterious(0.02) benign(0.172) TCGA-39-5030-01 1 171755080 171755080 G C METTL13 Silent p.A325A 0.12 TCGA-39-5030-01 1 174221626 174221626 C G RABGAP1L Missense_Mutation p.P295R 0.12 deleterious(0) probably_damaging(0.996) TCGA-39-5030-01 1 17557070 17557070 G A PADI1 Missense_Mutation p.E353K 0.09 deleterious(0) probably_damaging(0.999) TCGA-39-5030-01 1 178490422 178490422 T C TEX35 Intron 0.09 TCGA-39-5030-01 1 214478553 214478553 G T SMYD2 Missense_Mutation p.G66V 0.08 deleterious(0.01) probably_damaging(0.971) TCGA-39-5030-01 1 227300098 227300098 G T CDC42BPA Missense_Mutation p.A639D 0.04 tolerated(0.61) benign(0.028) TCGA-39-5030-01 1 228363082 228363082 C T IBA57 Silent p.G313G 0.07 TCGA-39-5030-01 1 231131696 231131696 A G ARV1 Silent p.V213V 0.04 TCGA-39-5030-01 1 237972262 237972262 A T RYR2 Missense_Mutation p.N4787I 0.05 probably_damaging(0.973) TCGA-39-5030-01 1 243471407 243471407 G C SDCCAG8 Missense_Mutation p.C286S 0.12 deleterious(0) probably_damaging(0.984) TCGA-39-5030-01 1 247614912 247614912 C G OR2B11 Missense_Mutation p.D125H 0.12 deleterious(0) probably_damaging(0.997) TCGA-39-5030-01 1 26369919 26369919 G A SLC30A2 Missense_Mutation p.T181M 0.11 deleterious(0) probably_damaging(1) TCGA-39-5030-01 1 28337512 28337512 C A EYA3 Missense_Mutation p.K285N 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-39-5030-01 1 28477434 28477434 A T PTAFR Missense_Mutation p.N33K 0.14 deleterious(0) probably_damaging(1) TCGA-39-5030-01 1 36564093 36564093 C T COL8A2 Missense_Mutation p.G397R 0.15 deleterious(0) unknown(0) TCGA-39-5030-01 1 41949800 41949800 G A EDN2 Missense_Mutation p.R47C 0.07 deleterious(0) probably_damaging(0.999) TCGA-39-5030-01 1 45798117 45798117 C T MUTYH Missense_Mutation p.R242H 0.06 deleterious(0) probably_damaging(0.975) TCGA-39-5030-01 1 51439730 51439730 G A CDKN2C Missense_Mutation p.E99K 0.06 tolerated(0.25) benign(0.013) TCGA-39-5030-01 1 54607066 54607066 G A CDCP2 Silent p.L156L 0.07 TCGA-39-5030-01 1 57481000 57481000 G A DAB1 Missense_Mutation p.P334S 0.06 tolerated(0.05) possibly_damaging(0.783) TCGA-39-5030-01 1 92184997 92184997 C T TGFBR3 Missense_Mutation p.V480I 0.07 tolerated(0.17) benign(0.041) TCGA-39-5030-01 20 60578821 60578821 C T TAF4 Silent p.T779T 0.09 TCGA-39-5030-01 20 62591483 62591483 G A ZNF512B Nonsense_Mutation p.R813* 0.11 TCGA-39-5030-01 21 31587550 31587550 A - CLDN8 3'UTR 0.13 TCGA-39-5030-01 21 43277285 43277285 C A PRDM15 Missense_Mutation p.K461N 0.09 deleterious_low_confidence(0) possibly_damaging(0.889) TCGA-39-5030-01 21 47575431 47575431 G A FTCD Nonsense_Mutation p.Q3* 0.17 TCGA-39-5030-01 21 47575432 47575432 G A FTCD Silent p.S2S 0.17 TCGA-39-5030-01 22 18070729 18070729 C T SLC25A18 Missense_Mutation p.A205V 0.04 deleterious(0) possibly_damaging(0.874) TCGA-39-5030-01 22 20819760 20819760 C T KLHL22 Missense_Mutation p.R166H 0.09 tolerated(0.67) benign(0.001) TCGA-39-5030-01 22 26422427 26422432 GGGGAC TGGGAAA MYO18B Frame_Shift_Ins p.G2163Wfs*4 0.09 TCGA-39-5030-01 22 30864530 30864530 G A SEC14L3 Missense_Mutation p.R130C 0.07 deleterious(0.02) possibly_damaging(0.893) TCGA-39-5030-01 22 37491609 37491609 C A TMPRSS6 Missense_Mutation p.A214S 0.10 tolerated(0.38) benign(0.007) TCGA-39-5030-01 22 40038863 40038863 A G CACNA1I Missense_Mutation p.Y373C 0.20 deleterious(0) probably_damaging(0.964) TCGA-39-5030-01 22 41173355 41173355 G A SLC25A17 Silent p.R158R 0.09 TCGA-39-5030-01 22 50657616 50657616 C T TUBGCP6 Missense_Mutation p.A1503T 0.12 deleterious(0.05) possibly_damaging(0.71) TCGA-39-5030-01 2 105886000 105886000 C T TGFBRAP1 Missense_Mutation p.R712H 0.11 deleterious(0) probably_damaging(0.994) TCGA-39-5030-01 2 107459969 107459969 C T ST6GAL2 Silent p.E155E 0.15 TCGA-39-5030-01 2 108477224 108477224 C A RGPD4 Silent p.G587G 0.13 TCGA-39-5030-01 2 10922457 10922457 G A ATP6V1C2 Missense_Mutation p.V384I 0.12 tolerated(0.09) benign(0.001) TCGA-39-5030-01 2 152410492 152410492 G A NEB Silent p.I6492I 0.07 TCGA-39-5030-01 2 153530207 153530207 T C PRPF40A Missense_Mutation p.K349E 0.08 tolerated(0.47) benign(0.292) TCGA-39-5030-01 2 160287584 160287584 C G BAZ2B Missense_Mutation p.D662H 0.08 possibly_damaging(0.861) TCGA-39-5030-01 2 160295564 160295564 C T BAZ2B Missense_Mutation p.D286N 0.06 possibly_damaging(0.539) TCGA-39-5030-01 2 168726029 168726029 G A B3GALT1 Missense_Mutation p.M160I 0.09 deleterious(0.04) possibly_damaging(0.656) TCGA-39-5030-01 2 180830638 180830638 C T CWC22 Missense_Mutation p.E428K 0.12 deleterious(0.04) benign(0.009) TCGA-39-5030-01 2 189599261 189599261 A - DIRC1 3'UTR 0.19 TCGA-39-5030-01 2 189850464 189850465 - C COL3A1 Frame_Shift_Ins p.G139Wfs*4 0.09 TCGA-39-5030-01 2 193059101 193059101 C T TMEFF2 Silent p.T50T 0.08 TCGA-39-5030-01 2 198482601 198482601 C G RFTN2 Missense_Mutation p.E325Q 0.06 deleterious(0.02) possibly_damaging(0.668) TCGA-39-5030-01 2 202340345 202340345 C T STRADB Missense_Mutation p.S143L 0.05 deleterious(0) probably_damaging(1) TCGA-39-5030-01 2 207171375 207171375 C G ZDBF2 Missense_Mutation p.S708C 0.14 deleterious(0.01) probably_damaging(0.923) TCGA-39-5030-01 2 207173250 207173250 C T ZDBF2 Missense_Mutation p.S1333L 0.05 deleterious(0) benign(0.307) TCGA-39-5030-01 2 216903947 216903947 T C PECR 3'UTR 0.05 TCGA-39-5030-01 2 227663295 227663295 G A IRS1 Missense_Mutation p.R54W 0.11 deleterious(0.03) benign(0.006) TCGA-39-5030-01 2 227917019 227917019 A T COL4A4 Splice_Site p.X990_splice 0.17 TCGA-39-5030-01 2 231948391 231948391 C T PSMD1 Missense_Mutation p.R546C 0.05 deleterious(0) probably_damaging(0.998) TCGA-39-5030-01 2 239092332 239092332 C A ILKAP Missense_Mutation p.D226Y 0.06 deleterious(0) probably_damaging(0.98) TCGA-39-5030-01 2 242438156 242438156 C T STK25 Missense_Mutation p.R272H 0.07 deleterious(0) possibly_damaging(0.527) TCGA-39-5030-01 2 242681886 242681886 G T D2HGDH Missense_Mutation p.Q129H 0.17 deleterious(0) probably_damaging(0.999) TCGA-39-5030-01 2 39552742 39552742 G A MAP4K3 Missense_Mutation p.R279W 0.05 deleterious(0.04) probably_damaging(0.984) TCGA-39-5030-01 2 45233549 45233549 C A SIX2 Silent p.S212S 0.04 TCGA-39-5030-01 2 63816130 63816130 C T MDH1 5'Flank 0.14 TCGA-39-5030-01 2 99155410 99155410 C T INPP4A Silent p.Y212Y 0.11 TCGA-39-5030-01 2 99220597 99220597 C T COA5 Missense_Mutation p.A53T 0.05 tolerated(0.86) benign(0.007) TCGA-39-5030-01 3 100949881 100949881 G T IMPG2 Silent p.V1114V 0.08 TCGA-39-5030-01 3 10413690 10413690 C G ATP2B2 Missense_Mutation p.E488Q 0.11 deleterious(0.01) benign(0.009) TCGA-39-5030-01 3 113804605 113804605 C T QTRTD1 Silent p.L380L 0.04 TCGA-39-5030-01 3 119153616 119153616 C T TMEM39A Missense_Mutation p.R409H 0.05 deleterious(0.02) benign(0.028) TCGA-39-5030-01 3 120320957 120320957 T C NDUFB4 Intron 0.23 TCGA-39-5030-01 3 129303326 129303326 C T PLXND1 Missense_Mutation p.R644H 0.04 tolerated(0.63) benign(0) TCGA-39-5030-01 3 142841021 142841021 G T CHST2 Missense_Mutation p.A455S 0.09 deleterious(0.02) possibly_damaging(0.524) TCGA-39-5030-01 3 158983100 158983100 C G IQCJ Missense_Mutation p.L130V 0.07 tolerated_low_confidence(0.08) benign(0.257) TCGA-39-5030-01 3 184046503 184046504 - A EIF4G1 Frame_Shift_Ins p.I1354Nfs*44 0.10 TCGA-39-5030-01 3 186338694 186338694 G A AHSG Missense_Mutation p.G360E 0.05 deleterious(0) probably_damaging(1) TCGA-39-5030-01 3 194407900 194407900 G A FAM43A Silent p.A115A 0.10 TCGA-39-5030-01 3 37061819 37061819 G A MLH1 Silent p.Q301Q 0.11 TCGA-39-5030-01 3 37061853 37061853 G T MLH1 Nonsense_Mutation p.E313* 0.11 TCGA-39-5030-01 3 40352450 40352450 T C EIF1B Missense_Mutation p.I33T 0.18 deleterious(0.02) probably_damaging(0.96) TCGA-39-5030-01 3 45132780 45132780 G A CDCP1 Silent p.L626L 0.09 TCGA-39-5030-01 3 45153706 45153706 C T CDCP1 Missense_Mutation p.G175E 0.21 deleterious(0) probably_damaging(1) TCGA-39-5030-01 3 46497426 46497426 C - LTF Frame_Shift_Del p.G120Afs*6 0.20 TCGA-39-5030-01 3 9788039 9788039 C A BRPF1 Missense_Mutation p.P1127H 0.06 deleterious(0) probably_damaging(0.998) TCGA-39-5030-01 4 100530115 100530115 C T MTTP Missense_Mutation p.R584C 0.04 deleterious(0) possibly_damaging(0.462) TCGA-39-5030-01 4 108816946 108816946 G A SGMS2 Silent p.T79T 0.06 TCGA-39-5030-01 4 114275200 114275200 C T ANK2 Missense_Mutation p.A1809V 0.06 benign(0.003) TCGA-39-5030-01 4 126328171 126328171 G T FAT4 Missense_Mutation p.R1815L 0.10 probably_damaging(1) TCGA-39-5030-01 4 128851936 128851936 C T MFSD8 Nonsense_Mutation p.W300* 0.05 TCGA-39-5030-01 4 186291928 186291928 C T LRP2BP Missense_Mutation p.A282T 0.05 deleterious(0) benign(0.12) TCGA-39-5030-01 4 187120144 187120144 G A CYP4V2 Missense_Mutation p.M236I 0.17 tolerated(0.4) benign(0.216) TCGA-39-5030-01 4 25260783 25260783 T A PI4K2B Missense_Mutation p.V294D 0.09 deleterious(0) probably_damaging(0.98) TCGA-39-5030-01 4 47605540 47605540 C T CORIN Missense_Mutation p.V896I 0.05 tolerated(0.12) benign(0.073) TCGA-39-5030-01 4 56831849 56831849 C T CEP135 Missense_Mutation p.R290C 0.15 deleterious(0) possibly_damaging(0.847) TCGA-39-5030-01 4 6114505 6114505 C G JAKMIP1 Missense_Mutation p.E25Q 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-39-5030-01 4 62849149 62849149 G T LPHN3 Missense_Mutation p.A954S 0.18 tolerated(0.21) possibly_damaging(0.557) TCGA-39-5030-01 4 7435593 7435593 G A PSAPL1 Silent p.I338I 0.11 TCGA-39-5030-01 5 112175432 112175432 C T APC Missense_Mutation p.P1381S 0.07 probably_damaging(1) TCGA-39-5030-01 5 137878559 137878559 T C ETF1 Missense_Mutation p.I17V 0.10 tolerated(0.52) benign(0.057) TCGA-39-5030-01 5 138268318 138268318 G A CTNNA1 Missense_Mutation p.A784T 0.17 tolerated(0.41) benign(0.153) TCGA-39-5030-01 5 13845026 13845026 G A DNAH5 Nonsense_Mutation p.Q1731* 0.17 TCGA-39-5030-01 5 140475054 140475054 C T PCDHB2 Missense_Mutation p.T227M 0.16 deleterious_low_confidence(0.02) probably_damaging(0.964) TCGA-39-5030-01 5 141029088 141029088 G A FCHSD1 Silent p.F83F 0.13 TCGA-39-5030-01 5 156565862 156565862 C A MED7 Missense_Mutation p.S194I 0.10 tolerated(0.12) benign(0.002) TCGA-39-5030-01 5 167858385 167858385 T G WWC1 Missense_Mutation p.L739R 0.07 deleterious(0) probably_damaging(0.966) TCGA-39-5030-01 5 32087426 32087426 C - PDZD2 Frame_Shift_Del p.P1292Rfs*42 0.10 TCGA-39-5030-01 5 37392194 37392194 G A WDR70 Missense_Mutation p.V90I 0.08 tolerated(0.49) benign(0.001) TCGA-39-5030-01 5 41927220 41927220 T C FBXO4 Missense_Mutation p.W99R 0.05 deleterious(0) probably_damaging(1) TCGA-39-5030-01 5 87502852 87502852 C G TMEM161B Missense_Mutation p.E198Q 0.07 deleterious(0) probably_damaging(0.969) TCGA-39-5030-01 6 101296201 101296201 G A ASCC3 Silent p.C208C 0.08 TCGA-39-5030-01 6 106987389 106987389 G A AIM1 Missense_Mutation p.M1202I 0.07 deleterious(0.02) probably_damaging(0.998) TCGA-39-5030-01 6 107780271 107780271 C T PDSS2 Silent p.L73L 0.09 TCGA-39-5030-01 6 121768435 121768435 C T GJA1 Nonsense_Mutation p.R148* 0.06 TCGA-39-5030-01 6 129591883 129591883 A G LAMA2 Missense_Mutation p.I813V 0.04 tolerated(0.37) benign(0.007) TCGA-39-5030-01 6 137245683 137245683 C G SLC35D3 Missense_Mutation p.P367R 0.09 tolerated_low_confidence(0.36) benign(0.013) TCGA-39-5030-01 6 138196093 138196093 G A TNFAIP3 Missense_Mutation p.R136H 0.06 tolerated(0.13) benign(0.027) TCGA-39-5030-01 6 146747715 146747715 C G GRM1 Intron 0.12 TCGA-39-5030-01 6 150004302 150004302 G A LATS1 Silent p.F641F 0.10 TCGA-39-5030-01 6 151869452 151869452 G A CCDC170 Missense_Mutation p.R201H 0.10 tolerated(0.33) benign(0.001) TCGA-39-5030-01 6 158509790 158509790 G A SYNJ2 Missense_Mutation p.A1148T 0.05 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-39-5030-01 6 170627660 170627695 CCCTGAATCCAGGCGAGAAGTTCCCATGTGTTCAGA - FAM120B In_Frame_Del p.S397_E408del 0.19 TCGA-39-5030-01 6 31833154 31833154 G A SLC44A4 Silent p.Y566Y 0.07 TCGA-39-5030-01 6 36945884 36945884 C T MTCH1 Missense_Mutation p.M187I 0.04 tolerated(0.42) benign(0.032) TCGA-39-5030-01 6 41011317 41011317 G T TSPO2 Missense_Mutation p.W65C 0.06 deleterious(0) probably_damaging(0.997) TCGA-39-5030-01 6 43190375 43190375 G A CUL9 Missense_Mutation p.R2343Q 0.16 deleterious(0.04) probably_damaging(0.978) TCGA-39-5030-01 6 56918751 56918751 C T KIAA1586 Missense_Mutation p.A485V 0.08 tolerated(0.88) benign(0.016) TCGA-39-5030-01 6 64004921 64004921 A G LGSN Silent p.T20T 0.05 TCGA-39-5030-01 6 71567858 71567858 G A SMAP1 Missense_Mutation p.V399M 0.09 tolerated(0.16) benign(0.04) TCGA-39-5030-01 6 7585249 7585249 C G DSP Missense_Mutation p.S2585C 0.10 benign(0.001) TCGA-39-5030-01 6 86329009 86329009 C G SYNCRIP Missense_Mutation p.D379H 0.10 deleterious(0.01) probably_damaging(0.944) TCGA-39-5030-01 7 100490391 100490391 C T ACHE Missense_Mutation p.G373R 0.14 deleterious(0.03) probably_damaging(1) TCGA-39-5030-01 7 100686564 100686564 C A MUC17 Missense_Mutation p.A3956E 0.15 benign(0.01) TCGA-39-5030-01 7 100731660 100731660 C A TRIM56 Missense_Mutation p.P356H 0.19 deleterious(0) probably_damaging(0.994) TCGA-39-5030-01 7 102953109 102953109 G A PMPCB 3'UTR 0.08 TCGA-39-5030-01 7 107743572 107743572 G C LAMB4 Missense_Mutation p.T366S 0.06 deleterious(0.01) probably_damaging(0.991) TCGA-39-5030-01 7 134890753 134890753 C G WDR91 Missense_Mutation p.E218Q 0.07 tolerated(0.47) benign(0.004) TCGA-39-5030-01 7 134925438 134925438 G A STRA8 Silent p.V76V 0.05 TCGA-39-5030-01 7 148895705 148895705 G A ZNF282 Missense_Mutation p.S149N 0.05 deleterious(0.03) possibly_damaging(0.528) TCGA-39-5030-01 7 2578022 2578022 G A BRAT1 Missense_Mutation p.A716V 0.08 deleterious(0) probably_damaging(0.999) TCGA-39-5030-01 7 43843318 43843318 C T BLVRA Silent p.S168S 0.03 TCGA-39-5030-01 7 45009408 45009408 C T MYO1G Missense_Mutation p.V467M 0.12 tolerated(0.06) benign(0.146) TCGA-39-5030-01 7 6189851 6189851 C T USP42 Missense_Mutation p.A675V 0.14 tolerated(0.49) benign(0.035) TCGA-39-5030-01 7 73184230 73184230 C A CLDN3 Missense_Mutation p.W50C 0.09 deleterious(0) probably_damaging(1) TCGA-39-5030-01 7 75933484 75933484 C T HSPB1 Silent p.A204A 0.20 TCGA-39-5030-01 7 88964767 88964767 G T ZNF804B Missense_Mutation p.R824I 0.06 deleterious(0) possibly_damaging(0.736) TCGA-39-5030-01 7 91855866 91855866 G C KRIT1 Missense_Mutation p.L374V 0.10 deleterious(0) probably_damaging(0.999) TCGA-39-5030-01 7 91980322 91980322 G C ANKIB1 Missense_Mutation p.D382H 0.10 tolerated(0.06) benign(0.013) TCGA-39-5030-01 7 98955978 98955978 G C ARPC1A Missense_Mutation p.K243N 0.11 tolerated(0.15) benign(0.005) TCGA-39-5030-01 8 103274250 103274250 A G UBR5 Silent p.L2579L 0.08 TCGA-39-5030-01 8 11702626 11702626 A G CTSB 3'UTR 0.14 TCGA-39-5030-01 8 117954881 117954881 G C AARD Missense_Mutation p.E137Q 0.15 tolerated(0.1) possibly_damaging(0.859) TCGA-39-5030-01 8 125565386 125565386 G T MTSS1 Silent p.A705A 0.07 TCGA-39-5030-01 8 144898903 144898903 C G PUF60 Missense_Mutation p.K489N 0.09 tolerated(0.09) benign(0.018) TCGA-39-5030-01 8 146156294 146156294 G A ZNF16 Missense_Mutation p.R627C 0.09 deleterious(0) probably_damaging(0.985) TCGA-39-5030-01 8 1626520 1626520 G A DLGAP2 Missense_Mutation p.S730N 0.17 tolerated(0.21) probably_damaging(0.951) TCGA-39-5030-01 8 22785204 22785204 G T PEBP4 Silent p.V8V 0.13 TCGA-39-5030-01 8 38187141 38187141 C G WHSC1L1 Missense_Mutation p.E446Q 0.10 tolerated(0.12) benign(0.313) TCGA-39-5030-01 8 42611901 42611901 G T CHRNA6 Silent p.T147T 0.04 TCGA-39-5030-01 8 48761740 48761740 C A PRKDC Missense_Mutation p.D2418Y 0.06 probably_damaging(0.94) TCGA-39-5030-01 8 54142388 54142388 G A OPRK1 Silent p.D204D 0.19 TCGA-39-5030-01 8 77618552 77618552 C A ZFHX4 Silent p.A743A 0.12 TCGA-39-5030-01 9 104170627 104170627 G C ZNF189 Missense_Mutation p.E193Q 0.05 tolerated(0.63) benign(0.039) TCGA-39-5030-01 9 104171282 104171282 G C ZNF189 Missense_Mutation p.R411T 0.07 tolerated(0.33) possibly_damaging(0.522) TCGA-39-5030-01 9 107288712 107288712 G T OR13C4 Missense_Mutation p.A260E 0.09 tolerated(0.18) possibly_damaging(0.9) TCGA-39-5030-01 9 111617236 111617236 G A ACTL7B Silent p.R325R 0.04 TCGA-39-5030-01 9 123169494 123169494 G C CDK5RAP2 Missense_Mutation p.P1587A 0.09 tolerated(0.63) benign(0.032) TCGA-39-5030-01 9 136635533 136635533 G A VAV2 Missense_Mutation p.R772C 0.07 deleterious(0) possibly_damaging(0.776) TCGA-39-5030-01 9 139329253 139329253 C T INPP5E Missense_Mutation p.R292H 0.08 deleterious(0) possibly_damaging(0.489) TCGA-39-5030-01 9 73206004 73206004 T C TRPM3 Missense_Mutation p.I1044V 0.03 tolerated(0.22) probably_damaging(0.976) TCGA-39-5030-01 9 78953262 78953262 G A PCSK5 Missense_Mutation p.R1595H 0.14 tolerated(0.24) benign(0.006) TCGA-39-5030-01 9 97845023 97845023 C G C9orf3 Intron 0.11 TCGA-39-5030-01 X 102005284 102005284 C G BHLHB9 Missense_Mutation p.S454C 0.10 tolerated(0.06) benign(0.395) TCGA-39-5030-01 X 119680457 119680457 C A CUL4B Missense_Mutation p.S282I 0.10 tolerated(0.21) benign(0.059) TCGA-39-5030-01 X 123019782 123019782 C A XIAP Nonsense_Mutation p.C90* 0.14 TCGA-39-5030-01 X 128674794 128674794 A T OCRL Missense_Mutation p.Q38L 0.10 deleterious_low_confidence(0) benign(0) TCGA-39-5030-01 X 130220305 130220305 G T ARHGAP36 Silent p.V428V 0.08 TCGA-39-5030-01 X 13337594 13337594 G A ATXN3L Nonsense_Mutation p.R154* 0.09 TCGA-39-5030-01 X 153609143 153609143 G A EMD Missense_Mutation p.E144K 0.08 tolerated(0.08) benign(0.018) TCGA-39-5030-01 X 153609540 153609540 G T EMD Nonsense_Mutation p.E250* 0.11 TCGA-39-5030-01 X 27998586 27998586 G A DCAF8L1 Missense_Mutation p.A289V 0.07 deleterious(0.01) benign(0.156) TCGA-39-5030-01 X 32382757 32382758 TC - DMD Frame_Shift_Del p.D1699Hfs*5 0.10 TCGA-39-5030-01 X 37027835 37027835 G C FAM47C Missense_Mutation p.R451P 0.13 tolerated_low_confidence(0.13) possibly_damaging(0.824) TCGA-39-5030-01 X 37913575 37913575 C A SYTL5 Silent p.R77R 0.12 TCGA-39-5030-01 X 51640678 51640678 G A MAGED1 Missense_Mutation p.V564I 0.14 tolerated_low_confidence(0.36) possibly_damaging(0.835) TCGA-39-5030-01 X 53459056 53459056 G A HSD17B10 Silent p.L122L 0.07 TCGA-39-5030-01 X 54476175 54476175 G T FGD1 Missense_Mutation p.L689M 0.05 tolerated(0.06) benign(0.004) TCGA-39-5030-01 X 54954175 54954175 C T TRO Silent p.H613H 0.05 TCGA-39-5030-01 X 68060194 68060194 C T EFNB1 Silent p.A246A 0.16 TCGA-39-5030-01 X 70836791 70836791 C - CXCR3 Frame_Shift_Del p.L225Sfs*119 0.16 TCGA-39-5030-01 X 83723684 83723684 C T HDX Missense_Mutation p.M349I 0.06 tolerated(0.58) benign(0.001) TCGA-39-5031-01 10 102566224 102566224 G C PAX2 Missense_Mutation p.Q241H 0.37 tolerated(0.15) probably_damaging(0.971) TCGA-39-5031-01 10 104353392 104353392 G C SUFU Splice_Site p.X200_splice 0.20 TCGA-39-5031-01 10 124919932 124919933 CT - BUB3 Frame_Shift_Del p.S146Wfs*54 0.33 TCGA-39-5031-01 10 127693514 127693514 G T FANK1 Missense_Mutation p.A201S 0.46 tolerated(0.06) probably_damaging(0.999) TCGA-39-5031-01 10 129903801 129903801 T A MKI67 Silent p.I2101I 0.47 TCGA-39-5031-01 10 27368049 27368049 G T ANKRD26 Nonsense_Mutation p.S261* 0.11 TCGA-39-5031-01 10 30318354 30318354 C T KIAA1462 Silent p.L241L 0.20 TCGA-39-5031-01 10 48968613 48968613 G T GLUD1P2 RNA 0.11 TCGA-39-5031-01 10 50820179 50820179 G T SLC18A3 Missense_Mutation p.V465F 0.44 deleterious(0) possibly_damaging(0.512) TCGA-39-5031-01 10 5929903 5929903 C T ANKRD16 Missense_Mutation p.G148S 0.14 deleterious(0) probably_damaging(0.996) TCGA-39-5031-01 10 60154126 60154126 G A TFAM Silent p.L182L 0.07 TCGA-39-5031-01 10 6155486 6155486 C G RBM17 Nonsense_Mutation p.S291* 0.11 TCGA-39-5031-01 10 63851828 63851828 C G ARID5B Missense_Mutation p.S869C 0.13 tolerated(0.15) benign(0.219) TCGA-39-5031-01 10 71158397 71158397 G T HK1 Missense_Mutation p.G812C 0.38 deleterious(0) probably_damaging(0.996) TCGA-39-5031-01 10 72503414 72503414 G A ADAMTS14 Missense_Mutation p.V682I 0.11 tolerated(0.97) benign(0.013) TCGA-39-5031-01 10 73577053 73577053 T A PSAP 3'UTR 0.27 TCGA-39-5031-01 10 73822496 73822496 G - SPOCK2 3'UTR 0.11 TCGA-39-5031-01 10 74879866 74879866 G A NUDT13 Silent p.L58L 0.21 TCGA-39-5031-01 10 7762923 7762923 G A ITIH2 Silent p.Q245Q 0.13 TCGA-39-5031-01 10 97444366 97444366 C G TCTN3 Missense_Mutation p.E329Q 0.10 tolerated(0.1) benign(0.271) TCGA-39-5031-01 10 98411116 98411116 T A PIK3AP1 Missense_Mutation p.N293Y 0.08 tolerated(0.12) possibly_damaging(0.694) TCGA-39-5031-01 11 100064360 100064360 G C CNTN5 Missense_Mutation p.E617Q 0.16 tolerated(0.68) benign(0.109) TCGA-39-5031-01 11 115049489 115049489 C T CADM1 Missense_Mutation p.R362Q 0.14 tolerated(0.24) benign(0.072) TCGA-39-5031-01 11 118986832 118986832 C G C2CD2L Missense_Mutation p.H664D 0.08 deleterious(0) probably_damaging(1) TCGA-39-5031-01 11 118986933 118986933 C G C2CD2L Silent p.P697P 0.13 TCGA-39-5031-01 11 119535989 119535989 G A PVRL1 Missense_Mutation p.S341F 0.32 tolerated(0.31) benign(0.001) TCGA-39-5031-01 11 129800974 129800974 C T PRDM10 Silent p.E489E 0.42 TCGA-39-5031-01 11 13514120 13514120 C T PTH Silent p.Q60Q 0.14 TCGA-39-5031-01 11 14880628 14880628 C T PDE3B Missense_Mutation p.H854Y 0.15 deleterious(0) probably_damaging(1) TCGA-39-5031-01 11 18301471 18301471 C A HPS5 Missense_Mutation p.M1116I 0.40 tolerated(0.09) probably_damaging(0.996) TCGA-39-5031-01 11 18723292 18723292 T G TMEM86A Silent p.L153L 0.18 TCGA-39-5031-01 11 32874918 32874918 C G PRRG4 Missense_Mutation p.P176A 0.15 deleterious(0.01) benign(0.106) TCGA-39-5031-01 11 3735181 3735181 G A NUP98 Missense_Mutation p.T815I 0.14 deleterious(0) possibly_damaging(0.899) TCGA-39-5031-01 11 55038088 55038088 C T TRIM48 3'UTR 0.10 TCGA-39-5031-01 11 55761778 55761778 C T OR5F1 Silent p.A108A 0.10 TCGA-39-5031-01 11 55798745 55798745 T A OR5AS1 Missense_Mutation p.M284K 0.22 deleterious(0) probably_damaging(0.993) TCGA-39-5031-01 11 57077747 57077747 G C TNKS1BP1 Missense_Mutation p.S813C 0.13 tolerated(0.24) benign(0.003) TCGA-39-5031-01 11 57182517 57182517 G A SLC43A3 Missense_Mutation p.R278C 0.09 deleterious(0.05) possibly_damaging(0.892) TCGA-39-5031-01 11 58170611 58170611 G C OR5B3 Missense_Mutation p.S91C 0.08 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-39-5031-01 11 58723411 58723411 C A GLYATL1 Missense_Mutation p.R305S 0.45 tolerated(0.08) benign(0.016) TCGA-39-5031-01 11 59282956 59282956 G C OR4D9 Missense_Mutation p.D191H 0.08 deleterious(0) probably_damaging(0.961) TCGA-39-5031-01 11 60617696 60617696 G C CCDC86 Missense_Mutation p.K327N 0.17 deleterious(0) probably_damaging(0.999) TCGA-39-5031-01 11 6190633 6190633 C A OR52B2 Silent p.R308R 0.28 TCGA-39-5031-01 11 62297457 62297459 CTT - AHNAK In_Frame_Del p.E1477del 0.26 TCGA-39-5031-01 11 62298072 62298072 C T AHNAK Missense_Mutation p.E1273K 0.24 possibly_damaging(0.889) TCGA-39-5031-01 11 63064845 63064845 G T SLC22A10 Missense_Mutation p.A193S 0.19 deleterious(0.02) possibly_damaging(0.66) TCGA-39-5031-01 11 63987220 63987220 C A FERMT3 Silent p.L346L 0.09 TCGA-39-5031-01 11 64037583 64037583 T G BAD 3'UTR 0.24 TCGA-39-5031-01 11 64544043 64544043 C T SF1 Silent p.Q154Q 0.07 TCGA-39-5031-01 11 64557882 64557882 G A MAP4K2 Silent p.I715I 0.11 TCGA-39-5031-01 11 64803125 64803125 C G SNX15 Missense_Mutation p.F218L 0.09 tolerated(0.31) benign(0.414) TCGA-39-5031-01 11 64854843 64854843 A C ZFPL1 Silent p.G228G 0.42 TCGA-39-5031-01 11 65375870 65375870 C T MAP3K11 Silent p.L263L 0.12 TCGA-39-5031-01 11 65650870 65650870 C G CTSW Missense_Mutation p.S332C 0.05 deleterious(0) probably_damaging(0.999) TCGA-39-5031-01 11 66108320 66108320 C G BRMS1 Missense_Mutation p.D154H 0.38 deleterious(0.03) possibly_damaging(0.845) TCGA-39-5031-01 11 66444569 66444569 G C RBM4B 5'UTR 0.08 TCGA-39-5031-01 11 67171760 67171760 C T TBC1D10C Silent p.S29S 0.09 TCGA-39-5031-01 11 68571486 68571486 G C CPT1A Silent p.V179V 0.09 TCGA-39-5031-01 11 71706589 71706589 C T RNF121 Silent p.F285F 0.11 TCGA-39-5031-01 11 73075604 73075604 A G ARHGEF17 Missense_Mutation p.N1837D 0.38 deleterious(0.03) benign(0.156) TCGA-39-5031-01 11 73717284 73717284 C T UCP3 Missense_Mutation p.M89I 0.10 tolerated(0.42) benign(0.027) TCGA-39-5031-01 11 73811650 73811650 C G C2CD3 Missense_Mutation p.W884C 0.42 deleterious(0) probably_damaging(1) TCGA-39-5031-01 11 74414013 74414013 C T CHRDL2 Splice_Site p.X316_splice 0.06 TCGA-39-5031-01 11 86519517 86519517 C T PRSS23 Missense_Mutation p.H278Y 0.13 deleterious(0) probably_damaging(0.988) TCGA-39-5031-01 11 89892410 89892410 C A NAALAD2 Nonsense_Mutation p.Y298* 0.40 TCGA-39-5031-01 12 104134531 104134531 C A STAB2 Missense_Mutation p.Q1960K 0.10 tolerated(0.26) benign(0.146) TCGA-39-5031-01 12 104208723 104208723 C T NT5DC3 Missense_Mutation p.E129K 0.10 tolerated(1) benign(0.034) TCGA-39-5031-01 12 110252339 110252339 G C TRPV4 Missense_Mutation p.S88C 0.15 deleterious_low_confidence(0) possibly_damaging(0.823) TCGA-39-5031-01 12 110655899 110655899 G A IFT81 Missense_Mutation p.M633I 0.10 tolerated(0.09) benign(0.19) TCGA-39-5031-01 12 110893649 110893649 C G GPN3 Silent p.L218L 0.10 TCGA-39-5031-01 12 112186901 112186901 G T ACAD10 Intron 0.10 TCGA-39-5031-01 12 122281695 122281695 G A HPD Missense_Mutation p.P292L 0.10 deleterious(0) probably_damaging(0.996) TCGA-39-5031-01 12 123265748 123265748 C G CCDC62 Silent p.L89L 0.10 TCGA-39-5031-01 12 123812522 123812522 G C SBNO1 Nonsense_Mutation p.S450* 0.10 TCGA-39-5031-01 12 124228439 124228439 C T ATP6V0A2 Silent p.I382I 0.12 TCGA-39-5031-01 12 124289380 124289380 G C DNAH10 Missense_Mutation p.G809A 0.15 benign(0.015) TCGA-39-5031-01 12 132250835 132250835 G C SFSWAP Missense_Mutation p.E708D 0.12 tolerated(0.3) benign(0.021) TCGA-39-5031-01 12 132522540 132522540 G A EP400 Missense_Mutation p.D2036N 0.24 unknown(0) TCGA-39-5031-01 12 133327418 133327418 C G ANKLE2 Missense_Mutation p.E220Q 0.10 tolerated(0.19) benign(0.174) TCGA-39-5031-01 12 133357410 133357410 C A GOLGA3 Nonsense_Mutation p.E1186* 0.07 TCGA-39-5031-01 12 14943483 14943483 G A WBP11 Missense_Mutation p.P406S 0.34 deleterious_low_confidence(0.03) unknown(0) TCGA-39-5031-01 12 18576938 18576938 C T PIK3C2G Silent p.S782S 0.33 TCGA-39-5031-01 12 21472317 21472317 C A SLCO1A2 Intron 0.21 TCGA-39-5031-01 12 21472318 21472318 C A SLCO1A2 Intron 0.20 TCGA-39-5031-01 12 27081799 27081799 G A ASUN Missense_Mutation p.R114W 0.11 tolerated(0.05) benign(0.022) TCGA-39-5031-01 12 40001441 40001441 C A ABCD2 Missense_Mutation p.G399V 0.29 deleterious(0) benign(0.027) TCGA-39-5031-01 12 46322405 46322405 G A SCAF11 Missense_Mutation p.S360F 0.26 deleterious(0) possibly_damaging(0.907) TCGA-39-5031-01 12 4737262 4737262 C A AKAP3 Missense_Mutation p.R269L 0.28 tolerated(0.16) possibly_damaging(0.495) TCGA-39-5031-01 12 49229901 49229901 C T DDX23 Intron 0.13 TCGA-39-5031-01 12 49444670 49444670 T A KMT2D Silent p.P932P 0.31 TCGA-39-5031-01 12 521043 521043 G C CCDC77 Missense_Mutation p.E57Q 0.29 deleterious(0.04) probably_damaging(0.999) TCGA-39-5031-01 12 52841347 52841347 C T KRT6B Missense_Mutation p.E479K 0.38 deleterious(0) probably_damaging(0.98) TCGA-39-5031-01 12 53292299 53292299 C T KRT8 Missense_Mutation p.E431K 0.15 tolerated(0.09) benign(0.233) TCGA-39-5031-01 12 53691675 53691675 C A PFDN5 Silent p.L83L 0.07 TCGA-39-5031-01 12 56559219 56559219 C T SMARCC2 Missense_Mutation p.G1008S 0.07 tolerated_low_confidence(0.37) unknown(0) TCGA-39-5031-01 12 56721407 56721407 C T PAN2 Silent p.L220L 0.16 TCGA-39-5031-01 12 56737278 56737278 C T STAT2 Silent p.P817P 0.15 TCGA-39-5031-01 12 57127988 57127988 C G PRIM1 Missense_Mutation p.E396Q 0.11 tolerated(0.15) benign(0.175) TCGA-39-5031-01 12 62929435 62929435 C T MON2 Missense_Mutation p.H616Y 0.24 deleterious(0) probably_damaging(0.976) TCGA-39-5031-01 12 64816962 64816962 G T XPOT Missense_Mutation p.A374S 0.11 tolerated(0.44) benign(0.374) TCGA-39-5031-01 12 64828360 64828360 G C XPOT Missense_Mutation p.Q842H 0.14 deleterious(0) probably_damaging(0.997) TCGA-39-5031-01 12 6666601 6666601 G A NOP2 Missense_Mutation p.S699F 0.11 deleterious_low_confidence(0.03) possibly_damaging(0.653) TCGA-39-5031-01 12 6692573 6692573 G C CHD4 Intron 0.32 TCGA-39-5031-01 12 6761577 6761577 C G ING4 Missense_Mutation p.E170Q 0.11 tolerated(0.25) benign(0.067) TCGA-39-5031-01 12 7981421 7981421 C A SLC2A14 Missense_Mutation p.W208C 0.37 deleterious(0) probably_damaging(1) TCGA-39-5031-01 12 81111177 81111177 C A MYF5 Missense_Mutation p.T112N 0.17 tolerated(0.05) benign(0.174) TCGA-39-5031-01 12 97151357 97151357 A T C12orf55 Missense_Mutation p.L2677F 0.10 tolerated(0.08) possibly_damaging(0.595) TCGA-39-5031-01 12 98921682 98921682 G A TMPO Missense_Mutation p.D100N 0.12 deleterious_low_confidence(0.01) probably_damaging(0.978) TCGA-39-5031-01 13 109661274 109661274 G T MYO16 Missense_Mutation p.M802I 0.41 tolerated(1) benign(0.004) TCGA-39-5031-01 13 113158973 113158973 G A TUBGCP3 Silent p.F714F 0.26 TCGA-39-5031-01 13 25823374 25823374 C T MTMR6 Missense_Mutation p.C621Y 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-39-5031-01 13 28562754 28562754 G A URAD Silent p.N7N 0.22 TCGA-39-5031-01 13 29041227 29041227 C T FLT1 Silent p.V67V 0.10 TCGA-39-5031-01 13 35733368 35733368 C T NBEA Silent p.V1020V 0.11 TCGA-39-5031-01 13 41333178 41333178 C T MRPS31 Missense_Mutation p.D169N 0.11 tolerated(0.45) probably_damaging(1) TCGA-39-5031-01 13 45841420 45841422 AAC - GTF2F2 In_Frame_Del p.Q181del 0.30 TCGA-39-5031-01 13 48916850 48916850 G T RB1 Missense_Mutation p.S127I 0.32 deleterious(0) possibly_damaging(0.795) TCGA-39-5031-01 13 99092218 99092218 G A FARP1 Missense_Mutation p.E813K 0.13 deleterious(0.02) benign(0.202) TCGA-39-5031-01 14 100405640 100405640 C G EML1 Missense_Mutation p.F785L 0.20 deleterious(0) benign(0.442) TCGA-39-5031-01 14 105409022 105409022 C A AHNAK2 Missense_Mutation p.V4256F 0.30 possibly_damaging(0.701) TCGA-39-5031-01 14 105409053 105409053 C G AHNAK2 Silent p.L4245L 0.09 TCGA-39-5031-01 14 105417072 105417072 G C AHNAK2 Silent p.L1572L 0.10 TCGA-39-5031-01 14 105420059 105420059 C T AHNAK2 Missense_Mutation p.E577K 0.09 benign(0.037) TCGA-39-5031-01 14 105421375 105421375 G C AHNAK2 Missense_Mutation p.I190M 0.33 probably_damaging(0.933) TCGA-39-5031-01 14 106091400 106091400 T C IGHG4 Missense_Mutation p.H165R 0.11 tolerated(0.4) benign(0.003) TCGA-39-5031-01 14 35554831 35554831 C T PPP2R3C Missense_Mutation p.D443N 0.07 tolerated(0.31) benign(0.022) TCGA-39-5031-01 14 35554858 35554858 C T PPP2R3C Missense_Mutation p.E434K 0.08 deleterious(0) probably_damaging(0.987) TCGA-39-5031-01 14 37969198 37969199 AG - MIPOL1 Frame_Shift_Del p.N375Hfs*10 0.19 TCGA-39-5031-01 14 45512921 45512921 G C FAM179B Missense_Mutation p.R1282T 0.26 deleterious(0) probably_damaging(0.969) TCGA-39-5031-01 14 45706889 45706889 G A MIS18BP1 Silent p.I393I 0.08 TCGA-39-5031-01 14 50844896 50844896 T C CDKL1 Intron 0.28 TCGA-39-5031-01 14 55369083 55369083 G A GCH1 Missense_Mutation p.S100L 0.06 deleterious(0.01) benign(0.023) TCGA-39-5031-01 14 56117286 56117286 G T KTN1 Splice_Site p.X833_splice 0.16 TCGA-39-5031-01 14 64461905 64461905 C T SYNE2 Silent p.L975L 0.13 TCGA-39-5031-01 14 64537597 64537597 G C SYNE2 Missense_Mutation p.E3556Q 0.08 probably_damaging(0.999) TCGA-39-5031-01 14 64724059 64724059 C G ESR2 Missense_Mutation p.D326H 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-39-5031-01 14 64936211 64936211 G C AKAP5 Missense_Mutation p.E367Q 0.06 deleterious(0.01) possibly_damaging(0.573) TCGA-39-5031-01 14 65246467 65246467 G A SPTB Silent p.I1483I 0.13 TCGA-39-5031-01 14 68249978 68249978 G C ZFYVE26 Silent p.L1297L 0.08 TCGA-39-5031-01 14 69256726 69256726 C G ZFP36L1 Missense_Mutation p.E181Q 0.11 deleterious(0) probably_damaging(0.998) TCGA-39-5031-01 14 74061929 74061929 G A ACOT4 Silent p.L279L 0.10 TCGA-39-5031-01 14 75513083 75513083 C T MLH3 Silent p.E1092E 0.06 TCGA-39-5031-01 14 75513680 75513680 C A MLH3 Missense_Mutation p.M893I 0.07 tolerated(0.76) benign(0.001) TCGA-39-5031-01 14 75513683 75513683 C T MLH3 Missense_Mutation p.M892I 0.07 tolerated(0.2) benign(0.001) TCGA-39-5031-01 14 75514218 75514218 G A MLH3 Missense_Mutation p.S714F 0.10 deleterious(0) possibly_damaging(0.599) TCGA-39-5031-01 14 75747297 75747297 G A FOS Missense_Mutation p.R143Q 0.16 deleterious(0) probably_damaging(1) TCGA-39-5031-01 14 77857401 77857401 C G SAMD15 Missense_Mutation p.F613L 0.06 deleterious(0) possibly_damaging(0.557) TCGA-39-5031-01 14 81972508 81972508 C A SEL1L Nonsense_Mutation p.E140* 0.11 TCGA-39-5031-01 14 90798204 90798204 A T NRDE2 Missense_Mutation p.D15E 0.13 tolerated(1) benign(0.002) TCGA-39-5031-01 14 94125580 94125580 G C UNC79 Missense_Mutation p.L2028F 0.12 tolerated(0.07) probably_damaging(0.999) TCGA-39-5031-01 15 101718886 101718886 C G CHSY1 Missense_Mutation p.E372D 0.26 tolerated(0.27) benign(0.06) TCGA-39-5031-01 15 25324235 25324235 C A SNORD116-13 RNA 0.30 TCGA-39-5031-01 15 25415750 25415750 C T SNORD115-3 5'Flank 0.35 TCGA-39-5031-01 15 25620661 25620662 - GAGTTGTT UBE3A Frame_Shift_Ins p.C108Tfs*7 0.20 TCGA-39-5031-01 15 35044789 35044789 C T GJD2 Missense_Mutation p.G286R 0.04 tolerated(0.1) probably_damaging(0.987) TCGA-39-5031-01 15 40949569 40949569 C T CASC5 Missense_Mutation p.S2230L 0.05 deleterious(0) probably_damaging(0.984) TCGA-39-5031-01 15 43654029 43654029 G A ZSCAN29 Missense_Mutation p.L601F 0.03 tolerated(0.7) benign(0.002) TCGA-39-5031-01 15 44751303 44751303 G C CTDSPL2 Missense_Mutation p.D31H 0.04 deleterious_low_confidence(0) benign(0.399) TCGA-39-5031-01 15 49033734 49033734 G C CEP152 Intron 0.14 TCGA-39-5031-01 15 51756878 51756878 G - DMXL2 Frame_Shift_Del p.P2601Hfs*63 0.11 TCGA-39-5031-01 15 59191709 59191709 C T SLTM Silent p.K339K 0.12 TCGA-39-5031-01 15 71404515 71404515 G A CT62 Missense_Mutation p.S36F 0.11 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-39-5031-01 15 72639091 72639091 G A HEXA Intron 0.16 TCGA-39-5031-01 15 72641494 72641494 G C HEXA Missense_Mutation p.F304L 0.16 tolerated(0.69) benign(0.012) TCGA-39-5031-01 15 74573116 74573116 C A CCDC33 Missense_Mutation p.L333I 0.38 tolerated(0.1) benign(0.15) TCGA-39-5031-01 15 75586778 75586778 C A GOLGA6D Missense_Mutation p.Q682K 0.26 tolerated(0.69) benign(0.006) TCGA-39-5031-01 15 75762311 75762311 G C PTPN9 Missense_Mutation p.F463L 0.14 tolerated(0.4) benign(0.032) TCGA-39-5031-01 15 75763113 75763113 G C PTPN9 Missense_Mutation p.R423G 0.12 tolerated(0.34) benign(0.238) TCGA-39-5031-01 15 83349908 83349908 G A AP3B2 Nonsense_Mutation p.Q182* 0.14 TCGA-39-5031-01 15 85360141 85360141 C T ALPK3 Nonsense_Mutation p.Q22* 0.17 TCGA-39-5031-01 15 85383714 85383714 G T ALPK3 Missense_Mutation p.A604S 0.23 tolerated_low_confidence(0.05) benign(0.075) TCGA-39-5031-01 15 90774374 90774374 C T CIB1 Missense_Mutation p.E140K 0.21 tolerated(0.21) benign(0.122) TCGA-39-5031-01 15 91020916 91020916 C G IQGAP1 Missense_Mutation p.Q1042E 0.08 deleterious(0.01) benign(0.002) TCGA-39-5031-01 15 91423120 91423120 C G FURIN Missense_Mutation p.L428V 0.30 deleterious(0.01) probably_damaging(0.961) TCGA-39-5031-01 16 10775923 10775923 C A TEKT5 Nonsense_Mutation p.E264* 0.13 TCGA-39-5031-01 16 10861776 10861776 G C TVP23A 3'UTR 0.12 TCGA-39-5031-01 16 18826788 18826788 C T SMG1 Silent p.L3496L 0.13 TCGA-39-5031-01 16 18827768 18827768 C G SMG1 Missense_Mutation p.Q3386H 0.07 deleterious(0.03) possibly_damaging(0.459) TCGA-39-5031-01 16 19501728 19501728 C T TMC5 Missense_Mutation p.S862L 0.14 deleterious(0) probably_damaging(1) TCGA-39-5031-01 16 19718331 19718331 C T KNOP1 Nonsense_Mutation p.W426* 0.14 TCGA-39-5031-01 16 2807817 2807819 AGA - SRRM2 In_Frame_Del p.K131del 0.14 TCGA-39-5031-01 16 28631386 28631386 T C SULT1A1 Intron 0.20 TCGA-39-5031-01 16 28996671 28996671 C T LAT Intron 0.25 TCGA-39-5031-01 16 30666258 30666258 C - PRR14 Frame_Shift_Del p.L323Sfs*135 0.17 TCGA-39-5031-01 16 31075372 31075372 C G ZNF668 Missense_Mutation p.E160Q 0.25 deleterious(0.04) benign(0.141) TCGA-39-5031-01 16 31273035 31273035 C G ITGAM Missense_Mutation p.F17L 0.24 deleterious(0) probably_damaging(0.999) TCGA-39-5031-01 16 3254937 3254937 A G OR1F1 Missense_Mutation p.T231A 0.27 tolerated(0.76) benign(0.02) TCGA-39-5031-01 16 3633150 3633150 C G SLX4 Missense_Mutation p.E1701Q 0.09 deleterious(0.01) possibly_damaging(0.626) TCGA-39-5031-01 16 3778105 3778105 T A CREBBP Missense_Mutation p.S2315C 0.14 unknown(0) TCGA-39-5031-01 16 3779748 3779748 G A CREBBP Missense_Mutation p.S1767L 0.11 unknown(0) TCGA-39-5031-01 16 4863804 4863804 G A GLYR1 Silent p.I351I 0.11 TCGA-39-5031-01 16 5055943 5055943 G T SEC14L5 Missense_Mutation p.R444M 0.29 deleterious(0) possibly_damaging(0.853) TCGA-39-5031-01 16 67470609 67470609 C G HSD11B2 Missense_Mutation p.F307L 0.18 tolerated(0.28) probably_damaging(0.998) TCGA-39-5031-01 16 67916221 67916221 C G EDC4 Silent p.L1089L 0.33 TCGA-39-5031-01 16 68026025 68026025 G A DPEP2 Silent p.D154D 0.08 TCGA-39-5031-01 16 69748870 69748870 G A NQO1 Silent p.F138F 0.13 TCGA-39-5031-01 16 70578410 70578410 C T SF3B3 Silent p.L435L 0.13 TCGA-39-5031-01 16 70916674 70916674 G T HYDIN Missense_Mutation p.F3368L 0.10 possibly_damaging(0.682) TCGA-39-5031-01 16 74990499 74990499 G C WDR59 Missense_Mutation p.F38L 0.16 tolerated(0.06) benign(0.2) TCGA-39-5031-01 16 75481439 75481439 C T TMEM170A 3'UTR 0.10 TCGA-39-5031-01 16 88923573 88923573 C T TRAPPC2L Silent p.I5I 0.21 TCGA-39-5031-01 17 10406373 10406373 C T MYH1 Missense_Mutation p.E962K 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-39-5031-01 17 10450818 10450818 C G MYH2 Missense_Mutation p.E108Q 0.27 tolerated(0.13) possibly_damaging(0.88) TCGA-39-5031-01 17 13980228 13980228 G C COX10 Missense_Mutation p.L118F 0.44 tolerated(0.39) benign(0.021) TCGA-39-5031-01 17 15554796 15554798 TCT - RP11-385D13.1 In_Frame_Del p.E43del 0.13 TCGA-39-5031-01 17 17122399 17122399 G A FLCN Silent p.L332L 0.10 TCGA-39-5031-01 17 18045066 18045066 C A MYO15A Nonsense_Mutation p.Y1877* 0.43 TCGA-39-5031-01 17 18221365 18221365 C T SMCR8 Silent p.V754V 0.25 TCGA-39-5031-01 17 18566347 18566347 C G ZNF286B Missense_Mutation p.E158Q 0.27 tolerated(0.15) benign(0.354) TCGA-39-5031-01 17 18566462 18566462 C G ZNF286B Missense_Mutation p.Q119H 0.18 deleterious(0.01) benign(0.169) TCGA-39-5031-01 17 20108650 20108650 C G SPECC1 Missense_Mutation p.R430G 0.18 tolerated(0.11) possibly_damaging(0.72) TCGA-39-5031-01 17 3539509 3539509 G A SHPK Missense_Mutation p.A2V 0.11 deleterious(0.02) benign(0.11) TCGA-39-5031-01 17 38555128 38555128 G C TOP2A Missense_Mutation p.S1117C 0.12 deleterious(0) possibly_damaging(0.886) TCGA-39-5031-01 17 38922650 38922650 G C KRT26 3'UTR 0.43 TCGA-39-5031-01 17 39578372 39578372 C T KRT37 Silent p.L323L 0.16 TCGA-39-5031-01 17 39578435 39578435 G A KRT37 Silent p.I302I 0.18 TCGA-39-5031-01 17 39578672 39578672 C T KRT37 Silent p.L249L 0.11 TCGA-39-5031-01 17 39580001 39580001 C T KRT37 Intron 0.11 TCGA-39-5031-01 17 39580147 39580147 C G KRT37 Intron 0.06 TCGA-39-5031-01 17 39968008 39968008 C G LEPREL4 Missense_Mutation p.E54Q 0.22 tolerated(0.06) possibly_damaging(0.814) TCGA-39-5031-01 17 44408844 44408844 G A LRRC37A Missense_Mutation p.D1401N 0.14 tolerated(0.22) benign(0.001) TCGA-39-5031-01 17 48687294 48687294 C G CACNA1G Nonsense_Mutation p.S1586* 0.40 TCGA-39-5031-01 17 5042338 5042338 G C USP6 Intron 0.44 TCGA-39-5031-01 17 53040696 53040696 C G COX11 Missense_Mutation p.E207Q 0.11 tolerated(0.63) possibly_damaging(0.883) TCGA-39-5031-01 17 55023814 55023818 GAAAG AAAA COIL Frame_Shift_Del p.L515Ffs*7 0.11 TCGA-39-5031-01 17 56232861 56232861 C G OR4D1 Nonsense_Mutation p.S116* 0.34 TCGA-39-5031-01 17 56438267 56438267 C T RNF43 Silent p.Q242Q 0.43 TCGA-39-5031-01 17 58024015 58024015 G C RPS6KB1 Missense_Mutation p.E482Q 0.11 tolerated_low_confidence(0.11) possibly_damaging(0.638) TCGA-39-5031-01 17 58024195 58024195 G T RPS6KB1 3'UTR 0.14 TCGA-39-5031-01 17 60130057 60130059 TCT - MED13 In_Frame_Del p.E103del 0.09 TCGA-39-5031-01 17 60837358 60837358 C T MARCH10 Missense_Mutation p.E74K 0.09 deleterious(0.01) possibly_damaging(0.804) TCGA-39-5031-01 17 61557861 61557861 C T ACE Silent p.L273L 0.09 TCGA-39-5031-01 17 61889493 61889493 C G DDX42 Missense_Mutation p.Q534E 0.16 deleterious(0) probably_damaging(0.995) TCGA-39-5031-01 17 62487068 62487068 T G POLG2 Missense_Mutation p.N272H 0.42 deleterious(0.02) benign(0.11) TCGA-39-5031-01 17 648684 648684 G A GEMIN4 Nonsense_Mutation p.Q867* 0.13 TCGA-39-5031-01 17 6945349 6945349 C T SLC16A11 Missense_Mutation p.M384I 0.43 tolerated(0.35) benign(0.049) TCGA-39-5031-01 17 695397 695397 G A RNMTL1 3'UTR 0.60 TCGA-39-5031-01 17 7093943 7093943 G A DLG4 3'UTR 0.21 TCGA-39-5031-01 17 7093991 7093991 G T DLG4 3'UTR 0.14 TCGA-39-5031-01 17 7095304 7095304 G A DLG4 Silent p.L671L 0.15 TCGA-39-5031-01 17 72310360 72310360 C G DNAI2 3'UTR 0.35 TCGA-39-5031-01 17 74473802 74473802 C T RHBDF2 Silent p.P275P 0.25 TCGA-39-5031-01 17 74623247 74623247 C T ST6GALNAC1 Silent p.G358G 0.11 TCGA-39-5031-01 17 7462439 7462439 C G TNFSF13 Nonsense_Mutation p.S28* 0.10 TCGA-39-5031-01 17 7462449 7462449 C T TNFSF13 Silent p.L31L 0.08 TCGA-39-5031-01 17 74717909 74717909 C A JMJD6 Silent p.G304G 0.11 TCGA-39-5031-01 17 74718008 74718008 C G JMJD6 Missense_Mutation p.W271C 0.11 deleterious(0) probably_damaging(1) TCGA-39-5031-01 17 7579378 7579378 G T TP53 Nonsense_Mutation p.Y103* 0.50 TCGA-39-5031-01 17 78093181 78093181 G A GAA 3'UTR 0.45 TCGA-39-5031-01 17 7809481 7809481 C T CHD3 Intron 0.13 TCGA-39-5031-01 17 79658588 79658588 G C HGS Missense_Mutation p.E217Q 0.12 deleterious(0.03) probably_damaging(0.988) TCGA-39-5031-01 17 79801953 79801953 C G P4HB Missense_Mutation p.E488Q 0.26 tolerated(0.06) probably_damaging(0.951) TCGA-39-5031-01 17 9490041 9490041 G A WDR16 Silent p.K99K 0.40 TCGA-39-5031-01 18 13621222 13621222 C T LDLRAD4 Silent p.F96F 0.11 TCGA-39-5031-01 18 18588119 18588119 G C ROCK1 Missense_Mutation p.Q483E 0.07 tolerated(0.44) probably_damaging(0.915) TCGA-39-5031-01 18 19202685 19202685 G A SNRPD1 Splice_Site p.X5_splice 0.06 TCGA-39-5031-01 18 21112115 21112115 T A NPC1 3'UTR 0.33 TCGA-39-5031-01 18 22057141 22057141 C T HRH4 Missense_Mutation p.S263L 0.12 tolerated(0.88) benign(0) TCGA-39-5031-01 18 28710533 28710533 G T DSC1 Missense_Mutation p.L877I 0.06 deleterious(0) probably_damaging(0.998) TCGA-39-5031-01 18 33691181 33691181 C T SLC39A6 Missense_Mutation p.M652I 0.06 deleterious(0) probably_damaging(0.998) TCGA-39-5031-01 18 33696661 33696661 C T SLC39A6 Missense_Mutation p.E481K 0.24 tolerated(0.16) benign(0.168) TCGA-39-5031-01 18 43667006 43667006 G C ATP5A1 Missense_Mutation p.P382A 0.05 deleterious_low_confidence(0) probably_damaging(1) TCGA-39-5031-01 18 47918511 47918511 C G SKA1 Missense_Mutation p.T221S 0.21 tolerated(0.37) benign(0.004) TCGA-39-5031-01 18 55355583 55355584 GA - ATP8B1 Frame_Shift_Del p.L459Hfs*8 0.21 TCGA-39-5031-01 18 60242387 60242387 G T ZCCHC2 Nonsense_Mutation p.G1025* 0.20 TCGA-39-5031-01 18 61160267 61160267 G C SERPINB5 Missense_Mutation p.G169A 0.38 deleterious(0.04) possibly_damaging(0.522) TCGA-39-5031-01 18 61223515 61223515 G T SERPINB12 Missense_Mutation p.M41I 0.23 deleterious(0) probably_damaging(0.991) TCGA-39-5031-01 18 61305057 61305057 G C SERPINB4 Missense_Mutation p.P357A 0.06 tolerated(0.36) benign(0.142) TCGA-39-5031-01 18 70417779 70417779 C T NETO1 Silent p.V353V 0.08 TCGA-39-5031-01 18 71793322 71793322 G C FBXO15 Missense_Mutation p.S267C 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-39-5031-01 18 77246387 77246387 C T NFATC1 Silent p.L731L 0.07 TCGA-39-5031-01 19 1049354 1049354 C T ABCA7 Silent p.L824L 0.11 TCGA-39-5031-01 19 1049377 1049377 C T ABCA7 Silent p.F831F 0.07 TCGA-39-5031-01 19 10506652 10506652 C G CDC37 Missense_Mutation p.K110N 0.12 deleterious(0.01) probably_damaging(0.969) TCGA-39-5031-01 19 10663612 10663612 G A ATG4D Missense_Mutation p.E432K 0.07 tolerated(0.13) probably_damaging(0.997) TCGA-39-5031-01 19 10664823 10664823 G A KRI1 Missense_Mutation p.S645L 0.10 tolerated(0.13) benign(0) TCGA-39-5031-01 19 11545901 11545901 C G CCDC151 5'UTR 0.11 TCGA-39-5031-01 19 11891126 11891126 C T ZNF441 Nonsense_Mutation p.Q163* 0.09 TCGA-39-5031-01 19 12461659 12461659 G C ZNF442 Missense_Mutation p.P247R 0.07 tolerated(0.54) benign(0.012) TCGA-39-5031-01 19 1251880 1251880 G C MIDN Missense_Mutation p.E122Q 0.26 deleterious(0) possibly_damaging(0.875) TCGA-39-5031-01 19 12807446 12807446 G A FBXW9 5'UTR 0.27 TCGA-39-5031-01 19 13035011 13035011 G A FARSA Missense_Mutation p.L448F 0.05 tolerated(0.07) possibly_damaging(0.871) TCGA-39-5031-01 19 1418235 1418235 G A DAZAP1 Missense_Mutation p.E35K 0.10 deleterious(0) unknown(0) TCGA-39-5031-01 19 1418262 1418262 G A DAZAP1 Missense_Mutation p.D44N 0.12 tolerated(0.26) unknown(0) TCGA-39-5031-01 19 15350616 15350616 G A BRD4 Missense_Mutation p.S1100F 0.11 possibly_damaging(0.485) TCGA-39-5031-01 19 15917935 15917937 TCT - OR10H1 In_Frame_Del p.K304del 0.18 TCGA-39-5031-01 19 16008360 16008360 A G CYP4F2 Missense_Mutation p.L21P 0.31 deleterious(0) probably_damaging(0.97) TCGA-39-5031-01 19 16339738 16339738 C T AP1M1 Missense_Mutation p.P361L 0.16 deleterious(0.02) probably_damaging(0.979) TCGA-39-5031-01 19 16589875 16589875 G C CALR3 3'UTR 0.19 TCGA-39-5031-01 19 17476334 17476334 C A PLVAP Missense_Mutation p.G314C 0.32 deleterious(0.02) possibly_damaging(0.868) TCGA-39-5031-01 19 17643149 17643149 C T FAM129C Silent p.F119F 0.10 TCGA-39-5031-01 19 17653073 17653073 C T FAM129C Silent p.L464L 0.11 TCGA-39-5031-01 19 18308384 18308386 TCT - RAB3A In_Frame_Del p.K186del 0.12 TCGA-39-5031-01 19 18391933 18391933 G A JUND Missense_Mutation p.S121L 0.27 tolerated(0.08) benign(0.11) TCGA-39-5031-01 19 18964156 18964156 G C UPF1 Missense_Mutation p.D385H 0.15 deleterious(0) possibly_damaging(0.746) TCGA-39-5031-01 19 19043761 19043761 C T HOMER3 Missense_Mutation p.E169K 0.16 tolerated(0.06) possibly_damaging(0.673) TCGA-39-5031-01 19 20727718 20727718 C G ZNF737 Missense_Mutation p.G431R 0.18 deleterious(0.01) probably_damaging(1) TCGA-39-5031-01 19 21131580 21131580 G C ZNF85 Missense_Mutation p.W87S 0.06 tolerated(0.1) benign(0.066) TCGA-39-5031-01 19 21299680 21299680 G A ZNF714 Silent p.V70V 0.08 TCGA-39-5031-01 19 21476612 21476612 G A ZNF708 Missense_Mutation p.H386Y 0.10 deleterious(0.01) benign(0.392) TCGA-39-5031-01 19 21476864 21476864 G A ZNF708 Missense_Mutation p.H302Y 0.06 deleterious(0.01) possibly_damaging(0.469) TCGA-39-5031-01 19 21933973 21933973 C T ZNF100 Intron 0.27 TCGA-39-5031-01 19 22941883 22941883 C A ZNF99 Missense_Mutation p.K276N 0.25 deleterious(0.05) possibly_damaging(0.777) TCGA-39-5031-01 19 2834766 2834766 G C ZNF554 Missense_Mutation p.Q511H 0.10 deleterious(0.04) probably_damaging(0.983) TCGA-39-5031-01 19 3005560 3005560 C T TLE2 Missense_Mutation p.G591S 0.10 deleterious(0) probably_damaging(0.979) TCGA-39-5031-01 19 30308042 30308042 A G CCNE1 Splice_Site p.X61_splice 0.24 TCGA-39-5031-01 19 30934871 30934871 C A ZNF536 Silent p.L134L 0.29 TCGA-39-5031-01 19 31767814 31767814 C T TSHZ3 Missense_Mutation p.G962E 0.28 deleterious(0) possibly_damaging(0.787) TCGA-39-5031-01 19 31768045 31768045 G T TSHZ3 Nonsense_Mutation p.S885* 0.21 TCGA-39-5031-01 19 32844576 32844576 C G ZNF507 Missense_Mutation p.I280M 0.08 deleterious(0) probably_damaging(0.924) TCGA-39-5031-01 19 34890129 34890129 C A GPI Missense_Mutation p.F440L 0.15 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-39-5031-01 19 3546069 3546069 C T MFSD12 Intron 0.11 TCGA-39-5031-01 19 35514178 35514178 A G GRAMD1A Missense_Mutation p.Y631C 0.42 deleterious(0) possibly_damaging(0.867) TCGA-39-5031-01 19 35832500 35832500 G A CD22 Missense_Mutation p.E588K 0.30 tolerated(0.15) benign(0.001) TCGA-39-5031-01 19 38689091 38689091 G T SIPA1L3 Missense_Mutation p.D1635Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-39-5031-01 19 38799948 38799948 G A YIF1B Silent p.I106I 0.19 TCGA-39-5031-01 19 39516020 39516020 C A FBXO27 3'UTR 0.13 TCGA-39-5031-01 19 41445013 41445013 C T CYP2B7P RNA 0.11 TCGA-39-5031-01 19 42311204 42311204 G A CEACAM3 Intron 0.08 TCGA-39-5031-01 19 42490037 42490037 G T ATP1A3 Silent p.I208I 0.19 TCGA-39-5031-01 19 42794394 42794394 C T CIC Missense_Mutation p.R492W 0.05 probably_damaging(0.95) TCGA-39-5031-01 19 46811549 46811549 G C HIF3A Silent p.L145L 0.12 TCGA-39-5031-01 19 47197343 47197343 G A PRKD2 Silent p.F455F 0.09 TCGA-39-5031-01 19 47422077 47422077 G T ARHGAP35 Nonsense_Mutation p.E49* 0.27 TCGA-39-5031-01 19 4770786 4770786 T G MIR7-3 RNA 0.23 TCGA-39-5031-01 19 48342941 48342941 C T CRX Missense_Mutation p.S206F 0.20 tolerated(0.33) benign(0.278) TCGA-39-5031-01 19 48343180 48343180 C T CRX Silent p.L286L 0.21 TCGA-39-5031-01 19 49409111 49409111 C G NUCB1 Silent p.L115L 0.44 TCGA-39-5031-01 19 49564991 49564991 C G NTF4 Silent p.A88A 0.09 TCGA-39-5031-01 19 49637089 49637089 C T PPFIA3 Missense_Mutation p.R400W 0.24 deleterious(0) probably_damaging(0.976) TCGA-39-5031-01 19 50099552 50099552 C T PRR12 Missense_Mutation p.R654W 0.24 possibly_damaging(0.835) TCGA-39-5031-01 19 50306555 50306555 C T AP2A1 Missense_Mutation p.L778F 0.11 deleterious(0.01) benign(0.083) TCGA-39-5031-01 19 52580271 52580271 C A ZNF841 Missense_Mutation p.V28F 0.30 deleterious(0) benign(0.05) TCGA-39-5031-01 19 53343146 53343146 C T ZNF468 3'UTR 0.17 TCGA-39-5031-01 19 53343904 53343904 C G ZNF468 3'UTR 0.14 TCGA-39-5031-01 19 53344268 53344268 C G ZNF468 Missense_Mutation p.E427Q 0.14 tolerated(0.16) benign(0.21) TCGA-39-5031-01 19 54677872 54677872 T G MBOAT7 Missense_Mutation p.I429L 0.08 deleterious(0.02) benign(0.01) TCGA-39-5031-01 19 56235397 56235397 C G NLRP9 Missense_Mutation p.R703T 0.14 tolerated(0.29) benign(0.041) TCGA-39-5031-01 19 57640692 57640692 G C USP29 Missense_Mutation p.E217Q 0.13 deleterious(0.04) benign(0.176) TCGA-39-5031-01 19 5785253 5785253 G A DUS3L Silent p.F638F 0.14 TCGA-39-5031-01 19 58118674 58118674 G T ZNF530 Missense_Mutation p.R594I 0.08 deleterious(0.02) benign(0.068) TCGA-39-5031-01 19 58266091 58266091 C T ZNF776 3'UTR 0.08 TCGA-39-5031-01 19 58288012 58288012 G C ZNF586 Missense_Mutation p.E46D 0.11 deleterious(0.04) possibly_damaging(0.87) TCGA-39-5031-01 19 58490799 58490799 G C ZNF606 Missense_Mutation p.Q417E 0.14 deleterious(0.02) probably_damaging(0.987) TCGA-39-5031-01 19 58723025 58723025 G T ZNF274 Nonsense_Mutation p.E317* 0.21 TCGA-39-5031-01 19 757477 757477 G T MISP Silent p.R177R 0.40 TCGA-39-5031-01 19 8953558 8953558 G C MBD3L1 Missense_Mutation p.Q68H 0.18 tolerated(0.54) benign(0.009) TCGA-39-5031-01 19 9070300 9070300 T A MUC16 Missense_Mutation p.T5716S 0.17 unknown(0) TCGA-39-5031-01 19 9091316 9091316 C T MUC16 Missense_Mutation p.E167K 0.32 unknown(0) TCGA-39-5031-01 1 103380302 103380302 A T COL11A1 Silent p.G1294G 0.10 TCGA-39-5031-01 1 109883349 109883349 C T SORT1 Missense_Mutation p.E421K 0.08 tolerated(0.17) benign(0.01) TCGA-39-5031-01 1 109944647 109944647 G C PSMA5 Missense_Mutation p.I238M 0.13 deleterious(0.03) benign(0.043) TCGA-39-5031-01 1 1120531 1120531 G A TTLL10 Intron 0.19 TCGA-39-5031-01 1 112958854 112958854 G A CTTNBP2NL Missense_Mutation p.E23K 0.07 deleterious(0.03) possibly_damaging(0.672) TCGA-39-5031-01 1 113657094 113657094 G C LRIG2 Missense_Mutation p.R709P 0.30 tolerated(0.26) benign(0.174) TCGA-39-5031-01 1 113662124 113662124 C - LRIG2 Frame_Shift_Del p.S985Pfs*4 0.21 TCGA-39-5031-01 1 117629135 117629135 C T TTF2 Silent p.L717L 0.15 TCGA-39-5031-01 1 117654991 117654991 G T TRIM45 Missense_Mutation p.S560Y 0.13 deleterious(0) probably_damaging(0.98) TCGA-39-5031-01 1 118035835 118035835 C G MAN1A2 Nonsense_Mutation p.S412* 0.08 TCGA-39-5031-01 1 120468265 120468265 G A NOTCH2 Nonsense_Mutation p.Q1392* 0.13 TCGA-39-5031-01 1 12336242 12336242 C T VPS13D Missense_Mutation p.S866L 0.16 possibly_damaging(0.702) TCGA-39-5031-01 1 142713326 142713326 G C RP11-417J8.6 RNA 0.27 TCGA-39-5031-01 1 145281550 145281550 C T NOTCH2NL Silent p.L160L 0.04 TCGA-39-5031-01 1 149783774 149783774 C T HIST2H2BF Silent p.K35K 0.31 TCGA-39-5031-01 1 150429815 150429815 C T RPRD2 Nonsense_Mutation p.Q308* 0.30 TCGA-39-5031-01 1 150620868 150620868 C T GOLPH3L Missense_Mutation p.E263K 0.14 tolerated(0.05) benign(0.136) TCGA-39-5031-01 1 152733820 152733820 G C KPRP 3'UTR 0.49 TCGA-39-5031-01 1 153591394 153591394 C G S100A13 Missense_Mutation p.D92H 0.12 tolerated(0.07) unknown(0) TCGA-39-5031-01 1 155753824 155753826 CTC - GON4L In_Frame_Del p.E615del 0.15 TCGA-39-5031-01 1 156641286 156641286 C T NES Nonsense_Mutation p.W898* 0.11 TCGA-39-5031-01 1 158226844 158226844 C T CD1A Silent p.V291V 0.22 TCGA-39-5031-01 1 158449733 158449733 G T OR10R2 Missense_Mutation p.L22F 0.19 tolerated(0.71) benign(0.004) TCGA-39-5031-01 1 158449734 158449734 G T OR10R2 Missense_Mutation p.A23S 0.19 tolerated(0.8) benign(0.001) TCGA-39-5031-01 1 159166860 159166860 C T CADM3 Intron 0.10 TCGA-39-5031-01 1 160323932 160323932 G C NCSTN Missense_Mutation p.E402Q 0.10 tolerated(0.45) benign(0.038) TCGA-39-5031-01 1 161141748 161141748 C T B4GALT3 Missense_Mutation p.R347Q 0.33 deleterious(0.04) benign(0.029) TCGA-39-5031-01 1 162469927 162469927 C T UHMK1 Missense_Mutation p.H151Y 0.21 tolerated(0.34) benign(0.006) TCGA-39-5031-01 1 166818626 166818626 C G POGK Silent p.V270V 0.13 TCGA-39-5031-01 1 172526451 172526451 G C SUCO Missense_Mutation p.A159P 0.12 deleterious(0.01) possibly_damaging(0.724) TCGA-39-5031-01 1 185269418 185269418 C G IVNS1ABP Missense_Mutation p.E434Q 0.10 deleterious(0) probably_damaging(1) TCGA-39-5031-01 1 185270191 185270191 C T IVNS1ABP Missense_Mutation p.E345K 0.10 tolerated(0.21) benign(0.004) TCGA-39-5031-01 1 18691730 18691730 G C IGSF21 Missense_Mutation p.R185P 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-39-5031-01 1 197019883 197019883 C A F13B Missense_Mutation p.G561V 0.24 deleterious(0) probably_damaging(1) TCGA-39-5031-01 1 197390763 197390763 A T CRB1 Missense_Mutation p.D602V 0.29 tolerated(0.38) possibly_damaging(0.71) TCGA-39-5031-01 1 202464542 202464542 C T PPP1R12B Missense_Mutation p.S756L 0.06 tolerated(0.27) benign(0.001) TCGA-39-5031-01 1 202464554 202464554 C A PPP1R12B Missense_Mutation p.S760Y 0.08 deleterious(0.04) benign(0.429) TCGA-39-5031-01 1 207039176 207039176 G T IL20 5'UTR 0.21 TCGA-39-5031-01 1 208272301 208272301 C - PLXNA2 Frame_Shift_Del p.D541Tfs*20 0.32 TCGA-39-5031-01 1 209791921 209791921 G A LAMB3 Silent p.L929L 0.10 TCGA-39-5031-01 1 215822039 215822039 C T USH2A Missense_Mutation p.V4805I 0.34 benign(0.053) TCGA-39-5031-01 1 216373226 216373226 G T USH2A Missense_Mutation p.S1185Y 0.21 probably_damaging(0.976) TCGA-39-5031-01 1 217665061 217665061 C G GPATCH2 Missense_Mutation p.R413T 0.15 tolerated(0.14) probably_damaging(0.931) TCGA-39-5031-01 1 222802391 222802391 C T MIA3 Missense_Mutation p.S610L 0.10 deleterious(0.02) benign(0.224) TCGA-39-5031-01 1 223177892 223177892 C A DISP1 Missense_Mutation p.D1051E 0.32 deleterious(0.02) probably_damaging(1) TCGA-39-5031-01 1 223177893 223177893 T G DISP1 Missense_Mutation p.F1052V 0.32 deleterious(0) probably_damaging(1) TCGA-39-5031-01 1 225600282 225600282 G A LBR Missense_Mutation p.H320Y 0.15 tolerated(1) benign(0.002) TCGA-39-5031-01 1 226175869 226175869 C G SDE2 Missense_Mutation p.D288H 0.10 tolerated(0.06) possibly_damaging(0.707) TCGA-39-5031-01 1 228295503 228295503 G A MRPL55 Nonsense_Mutation p.R68* 0.19 TCGA-39-5031-01 1 228400408 228400408 C G OBSCN Silent p.L308L 0.09 TCGA-39-5031-01 1 22902721 22902721 C T EPHA8 Silent p.I57I 0.10 TCGA-39-5031-01 1 229567525 229567525 G A ACTA1 Silent p.I311I 0.11 TCGA-39-5031-01 1 230795272 230795272 G A COG2 Silent p.L45L 0.07 TCGA-39-5031-01 1 232551265 232551265 G C SIPA1L2 Silent p.L1579L 0.18 TCGA-39-5031-01 1 234569206 234569206 G C TARBP1 Missense_Mutation p.L782V 0.13 tolerated(0.21) benign(0.003) TCGA-39-5031-01 1 237806719 237806719 C G RYR2 Missense_Mutation p.I2438M 0.17 probably_damaging(0.977) TCGA-39-5031-01 1 24409207 24409207 G A MYOM3 Intron 0.38 TCGA-39-5031-01 1 246811316 246811316 G C CNST Missense_Mutation p.A605P 0.04 deleterious(0) probably_damaging(0.999) TCGA-39-5031-01 1 247615256 247615256 C A OR2B11 Missense_Mutation p.G10V 0.30 deleterious(0.02) benign(0.143) TCGA-39-5031-01 1 247737523 247737523 A G GCSAML Missense_Mutation p.S83G 0.15 tolerated(0.08) benign(0.242) TCGA-39-5031-01 1 248004481 248004481 T A OR11L1 Missense_Mutation p.T240S 0.28 deleterious(0) probably_damaging(0.999) TCGA-39-5031-01 1 248039238 248039238 G T TRIM58 Missense_Mutation p.S303I 0.18 tolerated(0.07) probably_damaging(0.969) TCGA-39-5031-01 1 249106336 249106336 C A SH3BP5L Silent p.G315G 0.25 TCGA-39-5031-01 1 24995649 24995649 C G SRRM1 Missense_Mutation p.S592C 0.16 unknown(0) TCGA-39-5031-01 1 27618778 27618778 G T WDTC1 Silent p.L184L 0.28 TCGA-39-5031-01 1 32828254 32828254 C G TSSK3 5'UTR 0.14 TCGA-39-5031-01 1 35485050 35485050 G C ZMYM6 Missense_Mutation p.S111C 0.35 deleterious(0.05) benign(0.109) TCGA-39-5031-01 1 36921956 36921956 C T MRPS15 Silent p.L156L 0.20 TCGA-39-5031-01 1 44422286 44422286 G C IPO13 Missense_Mutation p.M339I 0.09 deleterious(0.02) benign(0.053) TCGA-39-5031-01 1 45110680 45110680 G A RNF220 Missense_Mutation p.D413N 0.19 deleterious(0) probably_damaging(0.917) TCGA-39-5031-01 1 45887417 45887417 G A TESK2 Silent p.L108L 0.06 TCGA-39-5031-01 1 45887497 45887497 G A TESK2 Nonsense_Mutation p.Q82* 0.04 TCGA-39-5031-01 1 52289374 52289374 T A NRD1 Missense_Mutation p.Y442F 0.15 deleterious(0.01) probably_damaging(1) TCGA-39-5031-01 1 52991868 52991868 T C ZCCHC11 Missense_Mutation p.I29V 0.29 tolerated_low_confidence(0.2) benign(0.011) TCGA-39-5031-01 1 55089202 55089202 G T FAM151A 5'UTR 0.28 TCGA-39-5031-01 1 5993284 5993284 G A NPHP4 Silent p.L409L 0.19 TCGA-39-5031-01 1 60312778 60312778 G A HOOK1 Missense_Mutation p.E284K 0.14 deleterious(0) possibly_damaging(0.752) TCGA-39-5031-01 1 62503707 62503707 C G INADL Missense_Mutation p.P1340A 0.07 tolerated(0.21) benign(0.103) TCGA-39-5031-01 1 62672662 62672662 G A L1TD1 Missense_Mutation p.G121E 0.16 tolerated(1) unknown(0) TCGA-39-5031-01 1 6313942 6313942 C T GPR153 Missense_Mutation p.D208N 0.18 tolerated(0.22) benign(0.326) TCGA-39-5031-01 1 65270453 65270453 C G RAVER2 Intron 0.19 TCGA-39-5031-01 1 67486081 67486081 G C SLC35D1 Missense_Mutation p.L283V 0.08 deleterious(0) probably_damaging(0.999) TCGA-39-5031-01 1 75112383 75112383 G T C1orf173 Missense_Mutation p.Q71K 0.23 deleterious(0.01) possibly_damaging(0.757) TCGA-39-5031-01 1 77759537 77759537 C G AK5 Missense_Mutation p.Q103E 0.05 deleterious(0.01) possibly_damaging(0.868) TCGA-39-5031-01 1 7792647 7792647 G C CAMTA1 Silent p.G1018G 0.55 TCGA-39-5031-01 1 8403861 8403861 C G SLC45A1 Missense_Mutation p.L679V 0.23 tolerated(0.14) probably_damaging(0.997) TCGA-39-5031-01 1 86196157 86196157 C G COL24A1 3'UTR 0.11 TCGA-39-5031-01 20 18794459 18794459 G A SCP2D1 5'UTR 0.11 TCGA-39-5031-01 20 19662590 19662590 G A SLC24A3 Missense_Mutation p.D286N 0.09 tolerated(0.19) benign(0.334) TCGA-39-5031-01 20 19945645 19945645 C G RIN2 Silent p.L220L 0.07 TCGA-39-5031-01 20 21494134 21494134 G T NKX2-2 Missense_Mutation p.S58R 0.11 tolerated(0.09) benign(0.009) TCGA-39-5031-01 20 21687680 21687680 C A PAX1 Silent p.G297G 0.19 TCGA-39-5031-01 20 23667745 23667745 C A CST4 Nonsense_Mutation p.E108* 0.10 TCGA-39-5031-01 20 2636825 2636825 G C NOP56 Intron 0.19 TCGA-39-5031-01 20 30037910 30037910 G C DEFB123 Missense_Mutation p.C46S 0.29 deleterious(0) probably_damaging(0.989) TCGA-39-5031-01 20 31629812 31629812 C A BPIFB6 Silent p.G393G 0.07 TCGA-39-5031-01 20 32664611 32664611 G T RALY Missense_Mutation p.K216N 0.24 deleterious(0.02) possibly_damaging(0.652) TCGA-39-5031-01 20 33068455 33068455 A G ITCH Missense_Mutation p.K665E 0.17 deleterious(0.01) probably_damaging(0.977) TCGA-39-5031-01 20 34300964 34300964 G C RBM39 Missense_Mutation p.S384C 0.08 deleterious(0.01) possibly_damaging(0.566) TCGA-39-5031-01 20 3760348 3760348 G C SPEF1 Missense_Mutation p.L62V 0.12 tolerated(1) benign(0.002) TCGA-39-5031-01 20 3766431 3766431 C A CENPB Missense_Mutation p.D234Y 0.34 deleterious(0.01) unknown(0) TCGA-39-5031-01 20 40045984 40045984 G A CHD6 Missense_Mutation p.P2045S 0.09 tolerated_low_confidence(0.06) benign(0.035) TCGA-39-5031-01 20 42806559 42806559 C T JPH2 Intron 0.19 TCGA-39-5031-01 20 47701833 47701833 G C CSE1L Missense_Mutation p.E545Q 0.13 tolerated(0.51) benign(0.027) TCGA-39-5031-01 20 47865809 47865809 C G ZNFX1 Missense_Mutation p.R1251P 0.15 deleterious(0) probably_damaging(0.959) TCGA-39-5031-01 20 49209624 49209624 C T FAM65C Silent p.Q770Q 0.13 TCGA-39-5031-01 20 60885718 60885718 C A LAMA5 Intron 0.16 TCGA-39-5031-01 20 62275232 62275232 G A STMN3 Silent p.V56V 0.14 TCGA-39-5031-01 20 62648166 62648166 C T PRPF6 Missense_Mutation p.R539W 0.04 deleterious(0) possibly_damaging(0.814) TCGA-39-5031-01 21 15558281 15558281 C A LIPI Splice_Site p.X202_splice 0.04 TCGA-39-5031-01 21 27117588 27117588 G C GABPA Missense_Mutation p.G49R 0.05 tolerated(0.08) probably_damaging(0.963) TCGA-39-5031-01 21 34058125 34058125 G C SYNJ1 Missense_Mutation p.L390V 0.29 deleterious(0) probably_damaging(0.999) TCGA-39-5031-01 21 34897293 34897293 G C GART Missense_Mutation p.Q361E 0.16 tolerated(0.43) benign(0.002) TCGA-39-5031-01 21 39087405 39087405 G A KCNJ6 Nonsense_Mutation p.Q19* 0.24 TCGA-39-5031-01 21 40568985 40568985 C T BRWD1 Missense_Mutation p.E2004K 0.15 tolerated_low_confidence(0.44) benign(0.084) TCGA-39-5031-01 21 40752217 40752217 G T WRB 5'UTR 0.30 TCGA-39-5031-01 21 45821777 45821777 G A TRPM2 Silent p.R845R 0.38 TCGA-39-5031-01 21 47685237 47685237 C T MCM3AP Missense_Mutation p.E1078K 0.13 tolerated(0.69) benign(0.007) TCGA-39-5031-01 21 47783764 47783764 G A PCNT Missense_Mutation p.E842K 0.14 possibly_damaging(0.636) TCGA-39-5031-01 21 47959842 47959842 G C DIP2A Silent p.L658L 0.12 TCGA-39-5031-01 22 17619180 17619180 C G CECR5 Missense_Mutation p.D335H 0.07 tolerated(0.1) benign(0.243) TCGA-39-5031-01 22 18374399 18374399 C G MICAL3 Splice_Site p.X516_splice 0.10 TCGA-39-5031-01 22 21141193 21141193 G A SERPIND1 Missense_Mutation p.E447K 0.12 deleterious(0) probably_damaging(1) TCGA-39-5031-01 22 22160160 22160160 G T MAPK1 Silent p.L157L 0.11 TCGA-39-5031-01 22 22842011 22842011 A T ZNF280B 3'UTR 0.28 TCGA-39-5031-01 22 24452698 24452700 GAA - CABIN1 In_Frame_Del p.K381del 0.23 TCGA-39-5031-01 22 24629463 24629463 C G GGT5 Intron 0.16 TCGA-39-5031-01 22 36661498 36661498 G T APOL1 Missense_Mutation p.V222L 0.19 tolerated(0.17) benign(0.005) TCGA-39-5031-01 22 39146333 39146333 G A SUN2 Silent p.F160F 0.11 TCGA-39-5031-01 22 41926792 41926792 C A POLR3H Missense_Mutation p.D154Y 0.16 deleterious(0.01) possibly_damaging(0.595) TCGA-39-5031-01 22 47116103 47116103 G A CERK Missense_Mutation p.H87Y 0.14 tolerated(0.95) benign(0.001) TCGA-39-5031-01 22 47308002 47308002 C G TBC1D22A Missense_Mutation p.I311M 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-39-5031-01 22 50684751 50684751 G C HDAC10 Missense_Mutation p.F542L 0.08 tolerated(0.16) benign(0.018) TCGA-39-5031-01 2 111542385 111542385 G A ACOXL Missense_Mutation p.G51E 0.20 tolerated(0.09) possibly_damaging(0.559) TCGA-39-5031-01 2 113258796 113258796 C G TTL Silent p.L161L 0.12 TCGA-39-5031-01 2 11706686 11706686 G A GREB1 Missense_Mutation p.V120M 0.24 deleterious(0) probably_damaging(0.999) TCGA-39-5031-01 2 119732103 119732103 C G MARCO Missense_Mutation p.S192W 0.17 deleterious(0) possibly_damaging(0.565) TCGA-39-5031-01 2 120362833 120362833 C G PCDP1 Missense_Mutation p.D367E 0.39 deleterious(0.02) possibly_damaging(0.839) TCGA-39-5031-01 2 128366337 128366337 A - MYO7B Frame_Shift_Del p.K900Rfs*26 0.34 TCGA-39-5031-01 2 131520757 131520757 C A AMER3 Missense_Mutation p.T371N 0.48 deleterious(0) probably_damaging(0.999) TCGA-39-5031-01 2 135630170 135630170 G A ACMSD Missense_Mutation p.D270N 0.42 tolerated(0.05) possibly_damaging(0.819) TCGA-39-5031-01 2 145156514 145156514 A T ZEB2 Missense_Mutation p.L747H 0.42 tolerated(0.16) benign(0.005) TCGA-39-5031-01 2 15415908 15415908 C G NBAS Missense_Mutation p.M1808I 0.23 tolerated(0.19) benign(0) TCGA-39-5031-01 2 163256909 163256909 G C KCNH7 Missense_Mutation p.L733V 0.14 deleterious(0.01) possibly_damaging(0.893) TCGA-39-5031-01 2 173355770 173355770 A G ITGA6 Missense_Mutation p.K900E 0.48 tolerated(0.32) benign(0.008) TCGA-39-5031-01 2 174987919 174987919 C T OLA1 Silent p.K239K 0.19 TCGA-39-5031-01 2 179506971 179506971 C G TTN Silent p.L13517L 0.18 TCGA-39-5031-01 2 179588843 179588843 C A TTN Missense_Mutation p.R7048L 0.44 TCGA-39-5031-01 2 179730515 179730515 G T CCDC141 Silent p.A901A 0.45 TCGA-39-5031-01 2 201436108 201436108 C G SGOL2 Missense_Mutation p.Q347E 0.33 tolerated(0.58) benign(0.008) TCGA-39-5031-01 2 201533380 201533380 G A AOX1 Missense_Mutation p.E1218K 0.30 deleterious(0) probably_damaging(1) TCGA-39-5031-01 2 219232573 219232573 C T C2orf62 Silent p.F350F 0.55 TCGA-39-5031-01 2 219301884 219301886 AGA - VIL1 In_Frame_Del p.K672del 0.24 TCGA-39-5031-01 2 219457065 219457065 C T RQCD1 Silent p.D193D 0.34 TCGA-39-5031-01 2 242135328 242135328 C T ANO7 Intron 0.33 TCGA-39-5031-01 2 242176058 242176059 TT - HDLBP Frame_Shift_Del p.K959Vfs*2 0.40 TCGA-39-5031-01 2 24484607 24484607 T A ITSN2 Missense_Mutation p.D787V 0.09 deleterious(0.02) unknown(0) TCGA-39-5031-01 2 29092700 29092700 C T TRMT61B Silent p.E148E 0.18 TCGA-39-5031-01 2 30987131 30987131 T C CAPN13 Missense_Mutation p.E189G 0.26 deleterious(0.01) benign(0.216) TCGA-39-5031-01 2 39222389 39222390 TC - SOS1 Frame_Shift_Del p.E1074Kfs*32 0.30 TCGA-39-5031-01 2 39411779 39411779 C G CDKL4 Missense_Mutation p.E249Q 0.11 tolerated(0.13) possibly_damaging(0.483) TCGA-39-5031-01 2 42483655 42483655 C T EML4 Nonsense_Mutation p.R75* 0.29 TCGA-39-5031-01 2 48026133 48026133 G A MSH6 Silent p.L337L 0.19 TCGA-39-5031-01 2 48688336 48688336 C G PPP1R21 Nonsense_Mutation p.S220* 0.23 TCGA-39-5031-01 2 55561844 55561844 C T CCDC88A Missense_Mutation p.E705K 0.10 deleterious(0.01) benign(0.087) TCGA-39-5031-01 2 55806830 55806830 C G SMEK2 Missense_Mutation p.D485H 0.08 tolerated(0.07) possibly_damaging(0.687) TCGA-39-5031-01 2 61558465 61558465 T C USP34 Missense_Mutation p.D959G 0.64 tolerated(0.06) benign(0.306) TCGA-39-5031-01 2 61644510 61644510 G A USP34 Intron 0.11 TCGA-39-5031-01 2 68608007 68608007 C G PLEK Silent p.S117S 0.28 TCGA-39-5031-01 2 69704048 69704048 C A AAK1 Missense_Mutation p.D919Y 0.31 deleterious(0) probably_damaging(0.997) TCGA-39-5031-01 2 73456011 73456011 C T PRADC1 Missense_Mutation p.D120N 0.26 tolerated(0.16) possibly_damaging(0.652) TCGA-39-5031-01 2 73826595 73826595 C G ALMS1 Missense_Mutation p.S3871C 0.06 benign(0.275) TCGA-39-5031-01 2 74901685 74901687 CTG - SEMA4F In_Frame_Del p.L296del 0.18 TCGA-39-5031-01 2 76976038 76976038 G T LRRTM4 Missense_Mutation p.P519Q 0.36 deleterious_low_confidence(0.03) benign(0.206) TCGA-39-5031-01 2 79348017 79348017 G A REG1A Silent p.L10L 0.12 TCGA-39-5031-01 2 85361184 85361184 C A TCF7L1 Silent p.R99R 0.29 TCGA-39-5031-01 2 86719209 86719209 G A KDM3A Silent p.L1311L 0.16 TCGA-39-5031-01 2 9588382 9588382 G A CPSF3 Missense_Mutation p.R433Q 0.26 tolerated(0.2) benign(0.01) TCGA-39-5031-01 2 9991696 9991696 G A TAF1B Missense_Mutation p.E78K 0.17 deleterious(0) possibly_damaging(0.695) TCGA-39-5031-01 2 9991740 9991740 G C TAF1B Missense_Mutation p.K92N 0.16 tolerated(0.31) benign(0.209) TCGA-39-5031-01 3 108298180 108298180 C T KIAA1524 Missense_Mutation p.D256N 0.14 deleterious(0) probably_damaging(1) TCGA-39-5031-01 3 108301881 108301884 ATTC - KIAA1524 Frame_Shift_Del p.N100Vfs*27 0.21 TCGA-39-5031-01 3 110831075 110831075 G C PVRL3 Missense_Mutation p.R120T 0.11 deleterious(0) possibly_damaging(0.864) TCGA-39-5031-01 3 113528274 113528274 G C ATP6V1A Nonstop_Mutation p.*618Yext*3 0.10 TCGA-39-5031-01 3 113761652 113761652 G C KIAA1407 Missense_Mutation p.Q105E 0.23 deleterious(0.04) benign(0.029) TCGA-39-5031-01 3 119562180 119562180 G A GSK3B Silent p.L386L 0.09 TCGA-39-5031-01 3 121207343 121207343 G A POLQ Missense_Mutation p.P1479S 0.09 tolerated(0.2) benign(0.072) TCGA-39-5031-01 3 121591497 121591497 G A EAF2 Missense_Mutation p.E200K 0.09 deleterious(0.03) benign(0.171) TCGA-39-5031-01 3 122255105 122255105 C G PARP9 Missense_Mutation p.V699L 0.26 tolerated(0.12) benign(0.066) TCGA-39-5031-01 3 122274371 122274371 C T PARP9 Missense_Mutation p.C251Y 0.06 deleterious(0) probably_damaging(0.992) TCGA-39-5031-01 3 122411176 122411176 C G PARP14 Silent p.L128L 0.16 TCGA-39-5031-01 3 124748078 124748078 C T HEG1 Missense_Mutation p.E191K 0.12 tolerated_low_confidence(0.08) benign(0.122) TCGA-39-5031-01 3 125257330 125257330 C T OSBPL11 Silent p.V663V 0.03 TCGA-39-5031-01 3 126180755 126180755 G A ZXDC Missense_Mutation p.L584F 0.08 tolerated(0.4) probably_damaging(0.974) TCGA-39-5031-01 3 127327758 127327758 A G MCM2 Silent p.L440L 0.28 TCGA-39-5031-01 3 129389306 129389306 C G TMCC1 Missense_Mutation p.D460H 0.09 deleterious(0.01) benign(0.259) TCGA-39-5031-01 3 130293257 130293257 C T COL6A6 Silent p.L1145L 0.06 TCGA-39-5031-01 3 132324026 132324026 G A ACAD11 Missense_Mutation p.H480Y 0.23 tolerated(0.61) benign(0.051) TCGA-39-5031-01 3 133193819 133193819 G A BFSP2 3'UTR 0.05 TCGA-39-5031-01 3 133525544 133525544 C T SRPRB Silent p.V82V 0.11 TCGA-39-5031-01 3 13372064 13372064 C T NUP210 Missense_Mutation p.E1336K 0.16 tolerated(0.41) benign(0.04) TCGA-39-5031-01 3 13372096 13372096 C T NUP210 Missense_Mutation p.G1325E 0.18 tolerated(0.78) benign(0.15) TCGA-39-5031-01 3 138009477 138009477 G A ARMC8 Missense_Mutation p.D648N 0.16 deleterious(0.04) possibly_damaging(0.619) TCGA-39-5031-01 3 138117390 138117390 G C MRAS Missense_Mutation p.E143Q 0.20 tolerated(0.6) benign(0.042) TCGA-39-5031-01 3 138433508 138433508 G A PIK3CB Silent p.I368I 0.10 TCGA-39-5031-01 3 138763014 138763014 G T PRR23C Missense_Mutation p.A150D 0.26 tolerated(0.21) probably_damaging(0.971) TCGA-39-5031-01 3 141900354 141900354 C A GK5 Nonsense_Mutation p.E333* 0.08 TCGA-39-5031-01 3 142542385 142542385 G C PCOLCE2 Nonsense_Mutation p.S313* 0.10 TCGA-39-5031-01 3 142735215 142735215 T G U2SURP Splice_Site p.X146_splice 0.07 TCGA-39-5031-01 3 15062303 15062303 C G NR2C2 Missense_Mutation p.F159L 0.18 deleterious(0) probably_damaging(1) TCGA-39-5031-01 3 151056472 151056472 C G P2RY12 Silent p.R54R 0.13 TCGA-39-5031-01 3 151458563 151458563 C G AADACL2 Missense_Mutation p.P90A 0.06 tolerated(0.1) benign(0.168) TCGA-39-5031-01 3 153943771 153943771 G A ARHGEF26 Missense_Mutation p.D688N 0.06 deleterious(0) probably_damaging(0.997) TCGA-39-5031-01 3 154834285 154834285 A G MME Missense_Mutation p.K126E 0.16 tolerated(0.75) benign(0.001) TCGA-39-5031-01 3 156867907 156867907 C T CCNL1 Missense_Mutation p.E276K 0.04 tolerated(0.07) benign(0.006) TCGA-39-5031-01 3 157271041 157271041 G A C3orf55 5'UTR 0.09 TCGA-39-5031-01 3 164906446 164906446 G C SLITRK3 Missense_Mutation p.P725A 0.47 tolerated(0.66) possibly_damaging(0.539) TCGA-39-5031-01 3 180671549 180671549 G A FXR1 Splice_Site p.X268_splice 0.04 TCGA-39-5031-01 3 183778074 183778074 C T HTR3C Silent p.L426L 0.04 TCGA-39-5031-01 3 186512450 186512450 G C RFC4 Nonsense_Mutation p.S136* 0.05 TCGA-39-5031-01 3 186760494 186760494 G A ST6GAL1 Translation_Start_Site p.M1? 0.14 probably_damaging(0.991) TCGA-39-5031-01 3 186954141 186954141 G T MASP1 Silent p.T506T 0.06 TCGA-39-5031-01 3 189526204 189526204 C T TP63 Silent p.F156F 0.05 TCGA-39-5031-01 3 189590662 189590662 G C TP63 Missense_Mutation p.E409D 0.04 deleterious(0.04) probably_damaging(0.996) TCGA-39-5031-01 3 189700892 189700892 G A LEPREL1 Missense_Mutation p.H423Y 0.04 tolerated(0.19) benign(0.005) TCGA-39-5031-01 3 193159353 193159353 C A ATP13A4 Nonsense_Mutation p.E781* 0.07 TCGA-39-5031-01 3 196733571 196733571 G C MFI2 Nonsense_Mutation p.S596* 0.08 TCGA-39-5031-01 3 197640718 197640718 C T IQCG Intron 0.07 TCGA-39-5031-01 3 32180216 32180216 C G GPD1L Missense_Mutation p.I121M 0.39 deleterious(0.02) benign(0.361) TCGA-39-5031-01 3 33195066 33195066 T A SUSD5 Missense_Mutation p.K353M 0.28 deleterious(0.01) benign(0.268) TCGA-39-5031-01 3 37367039 37367039 G T GOLGA4 Missense_Mutation p.C1243F 0.42 benign(0.337) TCGA-39-5031-01 3 37514854 37514854 G A ITGA9 Missense_Mutation p.R108Q 0.40 tolerated(0.53) benign(0.029) TCGA-39-5031-01 3 37514855 37514855 G T ITGA9 Silent p.R108R 0.40 TCGA-39-5031-01 3 48682912 48682912 G A CELSR3 Silent p.L2587L 0.09 TCGA-39-5031-01 3 48682972 48682972 G C CELSR3 Silent p.L2567L 0.06 TCGA-39-5031-01 3 49694176 49694176 G A BSN Missense_Mutation p.R2396Q 0.31 unknown(0) TCGA-39-5031-01 3 50310865 50310865 G A SEMA3B Intron 0.18 TCGA-39-5031-01 3 52476875 52476875 G C SEMA3G Missense_Mutation p.S55C 0.13 tolerated(0.14) possibly_damaging(0.564) TCGA-39-5031-01 3 52692308 52692308 C G PBRM1 Missense_Mutation p.E184D 0.11 tolerated(0.22) benign(0.21) TCGA-39-5031-01 3 56627033 56627033 G C CCDC66 Silent p.V324V 0.19 TCGA-39-5031-01 3 60522645 60522645 G C FHIT Silent p.L17L 0.40 TCGA-39-5031-01 3 69075232 69075232 G T TMF1 Missense_Mutation p.S925Y 0.12 deleterious(0) possibly_damaging(0.786) TCGA-39-5031-01 3 71008498 71008498 G T FOXP1 Missense_Mutation p.A647D 0.41 tolerated(1) benign(0.021) TCGA-39-5031-01 3 72957687 72957687 C G GXYLT2 Missense_Mutation p.L149V 0.47 deleterious(0.01) probably_damaging(0.938) TCGA-39-5031-01 3 78795913 78795913 C T ROBO1 Missense_Mutation p.D213N 0.12 deleterious(0.03) probably_damaging(0.98) TCGA-39-5031-01 3 97868721 97868721 C G OR5H14 Missense_Mutation p.F164L 0.13 tolerated(0.29) benign(0.011) TCGA-39-5031-01 4 100510802 100510802 C G MTTP Silent p.V132V 0.12 TCGA-39-5031-01 4 103553402 103553402 C G MANBA Missense_Mutation p.D818H 0.09 tolerated(0.22) benign(0.03) TCGA-39-5031-01 4 129035746 129035746 G C LARP1B Missense_Mutation p.R337T 0.25 tolerated(0.17) benign(0.115) TCGA-39-5031-01 4 15060838 15060838 G C CPEB2 Missense_Mutation p.D870H 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-39-5031-01 4 155506659 155506659 G T FGA Intron 0.35 TCGA-39-5031-01 4 155720158 155720158 G A RBM46 Missense_Mutation p.E282K 0.13 deleterious(0.04) benign(0.257) TCGA-39-5031-01 4 164050300 164050300 G A NAF1 Nonsense_Mutation p.Q412* 0.12 TCGA-39-5031-01 4 164247167 164247167 A C NPY1R Silent p.T180T 0.47 TCGA-39-5031-01 4 185691472 185691472 C G ACSL1 Intron 0.13 TCGA-39-5031-01 4 3418748 3418748 C T RGS12 Nonsense_Mutation p.Q846* 0.42 TCGA-39-5031-01 4 39122658 39122658 G A KLHL5 Missense_Mutation p.G747E 0.17 deleterious(0) probably_damaging(0.999) TCGA-39-5031-01 4 40045328 40045328 C T RP11-333E13.4 RNA 0.12 TCGA-39-5031-01 4 42122141 42122146 CCTTTT - BEND4 In_Frame_Del p.K438_R439del 0.12 TCGA-39-5031-01 4 44449797 44449797 G A KCTD8 Silent p.F248F 0.38 TCGA-39-5031-01 4 49064012 49064012 C A CWH43 3'UTR 0.19 TCGA-39-5031-01 4 52883607 52883607 A G LRRC66 Missense_Mutation p.I58T 0.10 tolerated(1) benign(0) TCGA-39-5031-01 4 55161433 55161433 C T PDGFRA Silent p.F1088F 0.07 TCGA-39-5031-01 4 6598903 6598903 G A MAN2B2 Missense_Mutation p.R374Q 0.09 tolerated(0.23) benign(0.274) TCGA-39-5031-01 4 71508450 71508450 C G ENAM Missense_Mutation p.P436R 0.11 deleterious(0) probably_damaging(0.969) TCGA-39-5031-01 4 77084496 77084496 G C SCARB2 Missense_Mutation p.S427C 0.19 deleterious(0.04) probably_damaging(0.971) TCGA-39-5031-01 4 77662404 77662404 G A SHROOM3 Missense_Mutation p.M1026I 0.16 tolerated(0.21) benign(0.068) TCGA-39-5031-01 4 79832756 79832756 C T BMP2K Missense_Mutation p.R1019C 0.09 deleterious_low_confidence(0) unknown(0) TCGA-39-5031-01 4 8229027 8229027 G T SH3TC1 Nonsense_Mutation p.E536* 0.22 TCGA-39-5031-01 4 84376570 84376570 C T HELQ Missense_Mutation p.D93N 0.10 tolerated_low_confidence(0.51) benign(0.006) TCGA-39-5031-01 4 84376974 84376974 C T HELQ 5'UTR 0.18 TCGA-39-5031-01 4 85664938 85664938 C T WDFY3 Silent p.R1996R 0.11 TCGA-39-5031-01 4 88979148 88979148 C T PKD2 Missense_Mutation p.R638C 0.12 deleterious(0) probably_damaging(0.976) TCGA-39-5031-01 5 1075584 1075584 C G SLC12A7 Missense_Mutation p.M623I 0.15 deleterious(0.01) probably_damaging(0.962) TCGA-39-5031-01 5 11384923 11384923 G C CTNND2 Missense_Mutation p.S344W 0.10 deleterious(0) probably_damaging(0.972) TCGA-39-5031-01 5 121785556 121785556 G C SNCAIP Missense_Mutation p.V537L 0.40 tolerated(0.07) probably_damaging(0.992) TCGA-39-5031-01 5 1264696 1264696 C T TERT Missense_Mutation p.R889Q 0.03 tolerated(0.53) benign(0.022) TCGA-39-5031-01 5 131552898 131552898 G C P4HA2 Nonsense_Mutation p.S108* 0.09 TCGA-39-5031-01 5 137803577 137803577 C T EGR1 Missense_Mutation p.S480L 0.10 deleterious_low_confidence(0) unknown(0) TCGA-39-5031-01 5 138268336 138268336 C T CTNNA1 Silent p.L790L 0.08 TCGA-39-5031-01 5 139918523 139918523 A G ANKHD1 Missense_Mutation p.Y2475C 0.35 probably_damaging(0.997) TCGA-39-5031-01 5 140215333 140215333 C G PCDHA7 Missense_Mutation p.F455L 0.42 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-39-5031-01 5 140237240 140237240 C T PCDHA10 Missense_Mutation p.A536V 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.858) TCGA-39-5031-01 5 140953218 140953218 G A DIAPH1 Silent p.P733P 0.19 TCGA-39-5031-01 5 14488200 14488200 C G TRIO Missense_Mutation p.S2488C 0.11 benign(0.216) TCGA-39-5031-01 5 148998503 148998504 AG - ARHGEF37 Frame_Shift_Del p.E265Rfs*5 0.11 TCGA-39-5031-01 5 149515421 149515421 G A PDGFRB Missense_Mutation p.L21F 0.20 tolerated(0.59) possibly_damaging(0.587) TCGA-39-5031-01 5 150946710 150946710 G A FAT2 Nonsense_Mutation p.Q595* 0.10 TCGA-39-5031-01 5 153030008 153030008 G A GRIA1 Silent p.E203E 0.08 TCGA-39-5031-01 5 155935666 155935666 C A SGCD Missense_Mutation p.S83Y 0.07 deleterious(0) probably_damaging(0.972) TCGA-39-5031-01 5 16451691 16451691 T C ZNF622 3'UTR 0.54 TCGA-39-5031-01 5 169697832 169697832 G T LCP2 Silent p.P138P 0.42 TCGA-39-5031-01 5 176300995 176300995 C A UNC5A Missense_Mutation p.L305I 0.30 deleterious(0) possibly_damaging(0.708) TCGA-39-5031-01 5 19473181 19473181 G T CDH18 3'UTR 0.17 TCGA-39-5031-01 5 205636 205636 C G CCDC127 Missense_Mutation p.E187Q 0.05 deleterious(0) possibly_damaging(0.837) TCGA-39-5031-01 5 24505332 24505332 G A CDH10 Missense_Mutation p.L428F 0.44 tolerated(0.28) benign(0.162) TCGA-39-5031-01 5 26916023 26916023 C G CDH9 Missense_Mutation p.D80H 0.52 deleterious(0) probably_damaging(0.948) TCGA-39-5031-01 5 38932055 38932055 G A OSMR Silent p.L761L 0.08 TCGA-39-5031-01 5 45353208 45353208 C T HCN1 Silent p.L457L 0.08 TCGA-39-5031-01 5 52374695 52374695 C T ITGA2 Silent p.F973F 0.15 TCGA-39-5031-01 5 5463329 5463329 G C KIAA0947 Missense_Mutation p.M1294I 0.19 tolerated(0.4) benign(0.008) TCGA-39-5031-01 5 54721826 54721826 G C PPAP2A Silent p.L198L 0.11 TCGA-39-5031-01 5 75591689 75591689 G A SV2C Missense_Mutation p.R475K 0.16 tolerated(1) benign(0) TCGA-39-5031-01 5 865589 865589 G A BRD9 Missense_Mutation p.R545W 0.05 deleterious(0) probably_damaging(0.959) TCGA-39-5031-01 5 89814557 89814557 G C LYSMD3 3'UTR 0.16 TCGA-39-5031-01 5 89815272 89815272 G A LYSMD3 Silent p.L95L 0.11 TCGA-39-5031-01 5 89933761 89933761 G C GPR98 Missense_Mutation p.D746H 0.12 probably_damaging(0.953) TCGA-39-5031-01 5 89981778 89981778 G A GPR98 Silent p.V2152V 0.21 TCGA-39-5031-01 5 99921932 99921932 G C FAM174A 3'UTR 0.13 TCGA-39-5031-01 6 105526314 105526314 C A LIN28B Missense_Mutation p.H137N 0.22 tolerated(0.08) probably_damaging(0.994) TCGA-39-5031-01 6 108985121 108985121 G T FOXO3 Missense_Mutation p.C362F 0.22 deleterious(0.01) possibly_damaging(0.565) TCGA-39-5031-01 6 111709286 111709286 G C REV3L Missense_Mutation p.H289D 0.17 deleterious(0.01) benign(0.001) TCGA-39-5031-01 6 111732738 111732738 C G REV3L Missense_Mutation p.E117Q 0.17 tolerated(0.18) possibly_damaging(0.89) TCGA-39-5031-01 6 117589561 117589561 G T VGLL2 Missense_Mutation p.D100Y 0.24 deleterious(0) probably_damaging(1) TCGA-39-5031-01 6 138727245 138727245 G C HEBP2 Missense_Mutation p.D126H 0.19 deleterious(0.01) possibly_damaging(0.857) TCGA-39-5031-01 6 144184768 144184768 G A LTV1 3'UTR 0.29 TCGA-39-5031-01 6 166580150 166580150 G C T Missense_Mutation p.A134G 0.17 deleterious(0.01) benign(0.243) TCGA-39-5031-01 6 167786830 167786830 G T TCP10 Missense_Mutation p.P270T 0.12 tolerated(0.46) benign(0.017) TCGA-39-5031-01 6 168363320 168363320 G A MLLT4 3'UTR 0.06 TCGA-39-5031-01 6 169622523 169622523 G C THBS2 Missense_Mutation p.F1014L 0.06 tolerated(0.06) benign(0.291) TCGA-39-5031-01 6 169628356 169628356 G C THBS2 Missense_Mutation p.F760L 0.08 tolerated(0.19) benign(0.267) TCGA-39-5031-01 6 170103065 170103065 G T C6orf120 Missense_Mutation p.E170D 0.14 tolerated(0.3) benign(0.104) TCGA-39-5031-01 6 17626323 17626323 G A NUP153 Missense_Mutation p.S1206F 0.16 deleterious(0.04) possibly_damaging(0.823) TCGA-39-5031-01 6 25492188 25492188 C A LRRC16A Missense_Mutation p.L386I 0.13 deleterious(0) possibly_damaging(0.701) TCGA-39-5031-01 6 27835170 27835170 C G HIST1H1B Silent p.L46L 0.23 TCGA-39-5031-01 6 28297319 28297319 G A ZSCAN31 Nonsense_Mutation p.Q48* 0.04 TCGA-39-5031-01 6 29572676 29572676 G C GABBR1 Missense_Mutation p.F843L 0.15 tolerated(0.19) probably_damaging(0.996) TCGA-39-5031-01 6 3006760 3006760 G C NQO2 5'UTR 0.10 TCGA-39-5031-01 6 30672587 30672587 G T MDC1 Missense_Mutation p.S1458Y 0.08 deleterious(0.02) possibly_damaging(0.726) TCGA-39-5031-01 6 30673549 30673549 G C MDC1 Silent p.V1137V 0.12 TCGA-39-5031-01 6 30680454 30680455 CT - MDC1 Frame_Shift_Del p.S422Pfs*28 0.08 TCGA-39-5031-01 6 31607333 31607333 C T BAG6 Missense_Mutation p.E1083K 0.10 tolerated(0.06) benign(0.305) TCGA-39-5031-01 6 32374847 32374847 G A BTNL2 Silent p.F18F 0.10 TCGA-39-5031-01 6 33133405 33133405 C T COL11A2 Missense_Mutation p.M1471I 0.13 unknown(0) TCGA-39-5031-01 6 33179274 33179274 G C RING1 Silent p.V265V 0.17 TCGA-39-5031-01 6 33289247 33289247 G A DAXX Missense_Mutation p.S102L 0.12 deleterious(0) probably_damaging(0.999) TCGA-39-5031-01 6 41774221 41774221 C T USP49 Silent p.A167A 0.18 TCGA-39-5031-01 6 43305564 43305564 C A ZNF318 Missense_Mutation p.D2058Y 0.15 benign(0.016) TCGA-39-5031-01 6 56483485 56483485 G T DST Intron 0.13 TCGA-39-5031-01 6 7355299 7355299 C G CAGE1 Missense_Mutation p.A782P 0.16 deleterious(0.03) benign(0.032) TCGA-39-5031-01 6 7569565 7569565 C T DSP Silent p.L522L 0.18 TCGA-39-5031-01 6 84290168 84290168 C T SNAP91 Splice_Site p.X767_splice 0.17 TCGA-39-5031-01 6 85446736 85446736 C A TBX18 Missense_Mutation p.Q497H 0.19 tolerated(0.46) probably_damaging(0.979) TCGA-39-5031-01 6 90382074 90382074 C G MDN1 Missense_Mutation p.E4547Q 0.11 benign(0.215) TCGA-39-5031-01 6 90513082 90513082 C T MDN1 Missense_Mutation p.M98I 0.12 benign(0.01) TCGA-39-5031-01 7 100366312 100366312 C A ZAN Silent p.A1707A 0.19 TCGA-39-5031-01 7 100484482 100484484 GAG - SRRT In_Frame_Del p.E575del 0.11 TCGA-39-5031-01 7 102953596 102953596 C G PMPCB 3'UTR 0.08 TCGA-39-5031-01 7 103051974 103051974 C T SLC26A5 Missense_Mutation p.D155N 0.27 tolerated(0.28) probably_damaging(0.995) TCGA-39-5031-01 7 103143678 103143678 C G RELN Splice_Site p.X2759_splice 0.07 TCGA-39-5031-01 7 103202380 103202380 C G RELN Missense_Mutation p.R1744T 0.10 deleterious(0) probably_damaging(0.992) TCGA-39-5031-01 7 103214687 103214687 C G RELN Missense_Mutation p.E1455Q 0.15 deleterious(0.04) probably_damaging(0.961) TCGA-39-5031-01 7 103234130 103234130 T G RELN Missense_Mutation p.K1304T 0.26 tolerated(0.09) possibly_damaging(0.905) TCGA-39-5031-01 7 104752848 104752848 C T KMT2E Missense_Mutation p.P1549S 0.06 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-39-5031-01 7 107431650 107431650 C - SLC26A3 Frame_Shift_Del p.G138Dfs*2 0.24 TCGA-39-5031-01 7 116381073 116381073 C G MET Missense_Mutation p.I565M 0.08 deleterious(0) possibly_damaging(0.724) TCGA-39-5031-01 7 127847965 127847965 T C MIR129-1 RNA 0.33 TCGA-39-5031-01 7 128489458 128489458 G T FLNC Missense_Mutation p.E1675D 0.31 tolerated(0.06) benign(0.054) TCGA-39-5031-01 7 128622324 128622324 C G TNPO3 Missense_Mutation p.D613H 0.09 deleterious(0) probably_damaging(0.997) TCGA-39-5031-01 7 131864622 131864622 G T PLXNA4 Missense_Mutation p.P1233Q 0.13 tolerated(0.64) possibly_damaging(0.876) TCGA-39-5031-01 7 133821796 133821796 G C LRGUK Silent p.L106L 0.21 TCGA-39-5031-01 7 134849719 134849720 GA - TMEM140 Frame_Shift_Del p.R177Gfs*2 0.11 TCGA-39-5031-01 7 138329559 138329559 G A SVOPL Missense_Mutation p.S231F 0.06 deleterious(0.01) probably_damaging(0.972) TCGA-39-5031-01 7 140481417 140481417 C A BRAF Missense_Mutation p.G464V 0.06 deleterious(0) probably_damaging(0.986) TCGA-39-5031-01 7 141619217 141619217 G A OR9A4 Missense_Mutation p.R181Q 0.10 tolerated(0.31) possibly_damaging(0.477) TCGA-39-5031-01 7 142013240 142013240 T C TRBV4-1 Missense_Mutation p.M32T 0.32 tolerated(1) benign(0.014) TCGA-39-5031-01 7 142460325 142460325 G A PRSS1 Silent p.L166L 0.03 TCGA-39-5031-01 7 14758225 14758225 C T DGKB Silent p.K136K 0.21 TCGA-39-5031-01 7 148516729 148516729 G A EZH2 Silent p.L320L 0.15 TCGA-39-5031-01 7 150490335 150490335 C A TMEM176B Silent p.V147V 0.08 TCGA-39-5031-01 7 151791525 151791525 C G GALNT11 Missense_Mutation p.F71L 0.10 tolerated(0.57) benign(0) TCGA-39-5031-01 7 156974312 156974312 G A UBE3C Silent p.E239E 0.12 TCGA-39-5031-01 7 16685310 16685310 G C ANKMY2 5'UTR 0.08 TCGA-39-5031-01 7 1997351 1997351 C A MAD1L1 Missense_Mutation p.L503F 0.12 tolerated(0.06) benign(0.435) TCGA-39-5031-01 7 44156737 44156738 TG - POLD2 Frame_Shift_Del p.T192Rfs*2 0.25 TCGA-39-5031-01 7 44198726 44198726 G A GCK 5'UTR 0.13 TCGA-39-5031-01 7 47886498 47886498 G A PKD1L1 Missense_Mutation p.S1711F 0.06 tolerated(0.21) benign(0.117) TCGA-39-5031-01 7 48139316 48139316 G A UPP1 Missense_Mutation p.D32N 0.09 deleterious(0) probably_damaging(0.989) TCGA-39-5031-01 7 5355647 5355647 C A TNRC18 Missense_Mutation p.D2268Y 0.08 possibly_damaging(0.861) TCGA-39-5031-01 7 6045587 6045587 C T PMS2 Silent p.L33L 0.10 TCGA-39-5031-01 7 75044221 75044221 G C POM121C 3'Flank 0.10 TCGA-39-5031-01 7 77762213 77762213 C T MAGI2 Missense_Mutation p.E1066K 0.12 tolerated(0.13) benign(0.248) TCGA-39-5031-01 7 82581599 82581599 C A PCLO Missense_Mutation p.Q2890H 0.27 unknown(0) TCGA-39-5031-01 7 87760697 87760697 G C ADAM22 Missense_Mutation p.M313I 0.09 tolerated(0.05) probably_damaging(0.984) TCGA-39-5031-01 7 91830045 91830045 C T KRIT1 3'UTR 0.09 TCGA-39-5031-01 7 91830051 91830051 C T KRIT1 Silent p.%3D 0.10 TCGA-39-5031-01 7 92146731 92146731 A C PEX1 Missense_Mutation p.D366E 0.11 tolerated(0.08) benign(0.027) TCGA-39-5031-01 7 98951667 98951667 C A ARPC1A Missense_Mutation p.F212L 0.09 deleterious(0) probably_damaging(0.948) TCGA-39-5031-01 7 99042437 99042437 C G CPSF4 Missense_Mutation p.F43L 0.13 tolerated(0.06) benign(0.033) TCGA-39-5031-01 7 99668922 99668924 GGG - ZNF3 In_Frame_Del p.P395del 0.09 TCGA-39-5031-01 8 100155294 100155294 C G VPS13B Missense_Mutation p.L582V 0.11 tolerated(0.22) possibly_damaging(0.636) TCGA-39-5031-01 8 107782077 107782077 G A ABRA Silent p.V114V 0.06 TCGA-39-5031-01 8 109462667 109462667 A T EMC2 Silent p.I55I 0.42 TCGA-39-5031-01 8 113651004 113651004 G T CSMD3 Silent p.L1149L 0.16 TCGA-39-5031-01 8 114389010 114389010 G T CSMD3 Intron 0.15 TCGA-39-5031-01 8 116426593 116426593 G A TRPS1 Silent p.I1181I 0.08 TCGA-39-5031-01 8 116616834 116616834 G A TRPS1 Silent p.F454F 0.14 TCGA-39-5031-01 8 120772851 120772851 C T TAF2 Missense_Mutation p.D896N 0.12 deleterious(0.01) probably_damaging(0.963) TCGA-39-5031-01 8 124132346 124132346 T A TBC1D31 Nonsense_Mutation p.Y496* 0.09 TCGA-39-5031-01 8 124132347 124132347 C T TBC1D31 Missense_Mutation p.L497F 0.09 deleterious(0) possibly_damaging(0.855) TCGA-39-5031-01 8 139160775 139160775 G C FAM135B Missense_Mutation p.H1146D 0.16 deleterious(0) probably_damaging(1) TCGA-39-5031-01 8 143822632 143822632 C T SLURP1 Missense_Mutation p.D81N 0.13 deleterious(0.04) possibly_damaging(0.696) TCGA-39-5031-01 8 144407560 144407560 C T TOP1MT Silent p.L209L 0.10 TCGA-39-5031-01 8 145537690 145537690 G A HSF1 Missense_Mutation p.E453K 0.10 tolerated(0.23) benign(0.311) TCGA-39-5031-01 8 145579035 145579035 C A SLC52A2 5'Flank 0.17 TCGA-39-5031-01 8 145665533 145665533 C G TONSL Missense_Mutation p.E451Q 0.27 tolerated(0.5) benign(0.001) TCGA-39-5031-01 8 146016768 146016768 C T RPL8 Silent p.G131G 0.05 TCGA-39-5031-01 8 146067569 146067569 G A ZNF7 Silent p.E359E 0.05 TCGA-39-5031-01 8 1645454 1645454 C A DLGAP2 Missense_Mutation p.P900T 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-39-5031-01 8 22058749 22058749 C G BMP1 Intron 0.10 TCGA-39-5031-01 8 22386063 22386063 G T PPP3CC Nonsense_Mutation p.E372* 0.12 TCGA-39-5031-01 8 27516290 27516290 C T SCARA3 Silent p.G201G 0.23 TCGA-39-5031-01 8 3087750 3087750 G C CSMD1 Nonsense_Mutation p.S1386* 0.18 TCGA-39-5031-01 8 3565986 3565986 C T CSMD1 Missense_Mutation p.R320K 0.15 possibly_damaging(0.669) TCGA-39-5031-01 8 38107250 38107250 C A DDHD2 Missense_Mutation p.Q425K 0.09 tolerated(1) benign(0.004) TCGA-39-5031-01 8 38153399 38153399 C T WHSC1L1 Missense_Mutation p.E944K 0.42 tolerated(0.08) benign(0.184) TCGA-39-5031-01 8 41790175 41790175 T A KAT6A Missense_Mutation p.I1855F 0.19 unknown(0) TCGA-39-5031-01 8 48647946 48647946 G A SPIDR Silent p.P894P 0.10 TCGA-39-5031-01 8 67547363 67547363 C G VCPIP1 Missense_Mutation p.K1014N 0.10 tolerated(0.06) benign(0.067) TCGA-39-5031-01 8 68062015 68062015 C A CSPP1 Intron 0.12 TCGA-39-5031-01 8 69445345 69445345 G C C8orf34 Missense_Mutation p.E356Q 0.23 deleterious(0.03) probably_damaging(0.979) TCGA-39-5031-01 8 79645810 79645810 C G IL7 3'UTR 0.09 TCGA-39-5031-01 8 91078134 91078134 C T CALB1 Missense_Mutation p.D148N 0.25 tolerated(0.06) benign(0.078) TCGA-39-5031-01 8 92982910 92982910 G C RUNX1T1 Missense_Mutation p.I516M 0.16 deleterious(0.05) benign(0.146) TCGA-39-5031-01 8 94935387 94935387 G C PDP1 Missense_Mutation p.R392T 0.09 tolerated(0.15) probably_damaging(0.971) TCGA-39-5031-01 8 9590841 9590841 G C TNKS Missense_Mutation p.E734Q 0.12 tolerated(0.07) probably_damaging(0.989) TCGA-39-5031-01 9 101530382 101530382 C G ANKS6 Missense_Mutation p.G708A 0.30 tolerated(0.8) benign(0.004) TCGA-39-5031-01 9 103090163 103090163 G C TEX10 Silent p.L569L 0.13 TCGA-39-5031-01 9 106877046 106877046 C T SMC2 Missense_Mutation p.S536F 0.07 deleterious(0.01) possibly_damaging(0.658) TCGA-39-5031-01 9 106889003 106889003 G C SMC2 Missense_Mutation p.E845Q 0.15 tolerated(0.21) benign(0.038) TCGA-39-5031-01 9 114131428 114131428 C T KIAA0368 Missense_Mutation p.R1845Q 0.08 tolerated(0.53) benign(0.021) TCGA-39-5031-01 9 114873987 114873987 G C SUSD1 Missense_Mutation p.S373C 0.08 deleterious(0) possibly_damaging(0.873) TCGA-39-5031-01 9 122075482 122075482 G T BRINP1 Missense_Mutation p.S51Y 0.12 deleterious(0) benign(0.078) TCGA-39-5031-01 9 125054075 125054075 G C MRRF Silent p.L169L 0.10 TCGA-39-5031-01 9 128509835 128509835 G A PBX3 Missense_Mutation p.E35K 0.19 tolerated_low_confidence(0.35) benign(0.004) TCGA-39-5031-01 9 131768572 131768572 G A NUP188 Silent p.A1666A 0.03 TCGA-39-5031-01 9 137642704 137642704 G A COL5A1 Silent p.A546A 0.26 TCGA-39-5031-01 9 139115921 139115921 C A QSOX2 Missense_Mutation p.M172I 0.17 tolerated(0.17) possibly_damaging(0.893) TCGA-39-5031-01 9 139651029 139651029 C G LCN8 Missense_Mutation p.E57D 0.13 tolerated(0.3) possibly_damaging(0.466) TCGA-39-5031-01 9 140093946 140093946 G T TPRN Silent p.L406L 0.20 TCGA-39-5031-01 9 140967951 140967951 C G CACNA1B Missense_Mutation p.I1562M 0.06 deleterious(0) probably_damaging(0.986) TCGA-39-5031-01 9 141010056 141010056 A C CACNA1B Missense_Mutation p.Q1901P 0.30 tolerated(0.18) benign(0.024) TCGA-39-5031-01 9 21837927 21837927 C T MTAP Missense_Mutation p.S123F 0.05 deleterious(0) benign(0.008) TCGA-39-5031-01 9 32543158 32543158 C A TOPORS Silent p.T455T 0.13 TCGA-39-5031-01 9 32630838 32630838 C A TAF1L Missense_Mutation p.K1580N 0.17 deleterious(0.01) probably_damaging(0.987) TCGA-39-5031-01 9 35662700 35662700 G T ARHGEF39 Missense_Mutation p.P238T 0.78 deleterious(0) probably_damaging(0.974) TCGA-39-5031-01 9 37541208 37541208 T A FBXO10 Silent p.P186P 0.23 TCGA-39-5031-01 9 37887804 37887804 C G SLC25A51 Missense_Mutation p.Q248H 0.10 tolerated(0.07) possibly_damaging(0.489) TCGA-39-5031-01 9 72091005 72091005 G C APBA1 Missense_Mutation p.L419V 0.11 tolerated_low_confidence(0.43) benign(0.05) TCGA-39-5031-01 9 78938068 78938071 CTGT - PCSK5 Frame_Shift_Del p.C1375Wfs*51 0.45 TCGA-39-5031-01 9 82323125 82323125 G A TLE4 Silent p.L343L 0.10 TCGA-39-5031-01 9 8375957 8375957 C G PTPRD Missense_Mutation p.G1547A 0.06 deleterious(0) probably_damaging(0.999) TCGA-39-5031-01 9 8484269 8484269 C A PTPRD Missense_Mutation p.R1088L 0.25 deleterious(0.03) probably_damaging(0.988) TCGA-39-5031-01 9 88648280 88648282 TCT - GOLM1 In_Frame_Del p.E348del 0.09 TCGA-39-5031-01 9 97055395 97055395 G C ZNF169 Intron 0.25 TCGA-39-5031-01 9 97842985 97842985 C T C9orf3 Missense_Mutation p.R748W 0.09 deleterious(0) probably_damaging(1) TCGA-39-5031-01 X 101908955 101908955 C A GPRASP1 Silent p.P38P 0.13 TCGA-39-5031-01 X 109694890 109694890 G T RGAG1 Missense_Mutation p.A349S 0.17 deleterious(0.03) benign(0.108) TCGA-39-5031-01 X 110951368 110951368 C A ALG13 Missense_Mutation p.S166Y 0.21 deleterious_low_confidence(0.01) benign(0.438) TCGA-39-5031-01 X 111698022 111698022 T A ZCCHC16 Missense_Mutation p.N22K 0.18 deleterious(0.03) possibly_damaging(0.856) TCGA-39-5031-01 X 117749672 117749672 A C DOCK11 Missense_Mutation p.Q1097P 0.19 tolerated(0.26) probably_damaging(0.939) TCGA-39-5031-01 X 118222335 118222335 G T KIAA1210 Missense_Mutation p.P953Q 0.16 tolerated(0.05) benign(0.345) TCGA-39-5031-01 X 122598715 122598715 G A GRIA3 Splice_Site p.X693_splice 0.12 TCGA-39-5031-01 X 129506983 129506983 C A SLC25A14 3'UTR 0.23 TCGA-39-5031-01 X 134186115 134186115 C T FAM127B Missense_Mutation p.M8I 0.12 tolerated(1) benign(0.001) TCGA-39-5031-01 X 135080640 135080640 G A SLC9A6 Splice_Site p.X202_splice 0.08 TCGA-39-5031-01 X 135312673 135312673 T C MAP7D3 Missense_Mutation p.K541E 0.16 deleterious(0.01) possibly_damaging(0.904) TCGA-39-5031-01 X 13681157 13681157 G A TCEANC Missense_Mutation p.C207Y 0.18 deleterious(0) probably_damaging(0.982) TCGA-39-5031-01 X 141291826 141291826 G A MAGEC2 5'UTR 0.17 TCGA-39-5031-01 X 148037466 148037466 C A AFF2 Missense_Mutation p.P631T 0.14 tolerated(0.24) possibly_damaging(0.451) TCGA-39-5031-01 X 149638334 149638334 T A MAMLD1 Nonsense_Mutation p.Y138* 0.24 TCGA-39-5031-01 X 153220573 153220573 T A HCFC1 Missense_Mutation p.T1093S 0.23 deleterious_low_confidence(0) possibly_damaging(0.542) TCGA-39-5031-01 X 153706634 153706634 C T LAGE3 Missense_Mutation p.R102K 0.08 deleterious(0.04) possibly_damaging(0.447) TCGA-39-5031-01 X 153706719 153706719 C T LAGE3 Missense_Mutation p.E74K 0.05 deleterious(0.01) probably_damaging(0.935) TCGA-39-5031-01 X 18622327 18622327 G A CDKL5 Missense_Mutation p.G428D 0.17 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-39-5031-01 X 19482334 19482334 G T MAP3K15 Nonsense_Mutation p.S239* 0.20 TCGA-39-5031-01 X 19947938 19947938 G C CXorf23 Missense_Mutation p.H662D 0.16 tolerated(0.07) benign(0) TCGA-39-5031-01 X 24024735 24024735 C T KLHL15 Missense_Mutation p.E26K 0.10 tolerated(0.86) benign(0.219) TCGA-39-5031-01 X 24580242 24580242 G T PCYT1B 3'UTR 0.11 TCGA-39-5031-01 X 24761436 24761436 C A POLA1 Missense_Mutation p.D846E 0.17 tolerated(0.43) benign(0.162) TCGA-39-5031-01 X 24761437 24761437 C A POLA1 Missense_Mutation p.P847T 0.17 deleterious(0) probably_damaging(1) TCGA-39-5031-01 X 2867672 2867672 G A ARSE Missense_Mutation p.S176F 0.13 deleterious(0) probably_damaging(0.938) TCGA-39-5031-01 X 29938208 29938208 C A IL1RAPL1 Silent p.R352R 0.24 TCGA-39-5031-01 X 3239840 3239840 T A MXRA5 Missense_Mutation p.M1296L 0.20 tolerated(0.76) benign(0) TCGA-39-5031-01 X 3240621 3240621 T C MXRA5 Silent p.Q1035Q 0.22 TCGA-39-5031-01 X 3241209 3241209 T A MXRA5 Missense_Mutation p.E839D 0.18 tolerated(0.15) benign(0.041) TCGA-39-5031-01 X 41495861 41495861 C T CASK Silent p.L295L 0.15 TCGA-39-5031-01 X 47106588 47106588 G A USP11 Silent p.E839E 0.10 TCGA-39-5031-01 X 47496454 47496454 C T ELK1 Silent p.L382L 0.24 TCGA-39-5031-01 X 48270302 48270302 G C SSX4B Missense_Mutation p.F25L 0.13 tolerated(0.05) possibly_damaging(0.814) TCGA-39-5031-01 X 48317959 48317959 G T SLC38A5 Missense_Mutation p.S427Y 0.17 deleterious(0) possibly_damaging(0.617) TCGA-39-5031-01 X 48652236 48652236 C T GATA1 Nonsense_Mutation p.Q303* 0.14 TCGA-39-5031-01 X 50658840 50658840 C T BMP15 Missense_Mutation p.R138C 0.23 tolerated(0.22) benign(0.015) TCGA-39-5031-01 X 54334465 54334465 C T WNK3 Missense_Mutation p.E327K 0.25 deleterious(0) probably_damaging(0.999) TCGA-39-5031-01 X 57935958 57935958 G T ZXDA Silent p.P299P 0.19 TCGA-39-5031-01 X 6069167 6069167 A T NLGN4X Missense_Mutation p.L114Q 0.19 deleterious(0) probably_damaging(0.991) TCGA-39-5031-01 X 67316832 67316832 G A OPHN1 Silent p.S522S 0.23 TCGA-39-5031-01 X 69498434 69498434 G T ARR3 Missense_Mutation p.G283V 0.13 deleterious(0) probably_damaging(0.995) TCGA-39-5031-01 X 69561721 69561721 A T KIF4A Missense_Mutation p.L402F 0.15 deleterious(0) possibly_damaging(0.884) TCGA-39-5031-01 X 70472625 70472625 C T ZMYM3 Missense_Mutation p.E161K 0.21 tolerated_low_confidence(1) benign(0.007) TCGA-39-5031-01 X 84525778 84525778 G C ZNF711 Missense_Mutation p.M410I 0.17 tolerated(0.67) benign(0.014) TCGA-39-5031-01 X 84526676 84526676 G A ZNF711 Missense_Mutation p.E710K 0.23 deleterious(0.01) probably_damaging(0.983) TCGA-39-5031-01 X 9905624 9905624 G C SHROOM2 Missense_Mutation p.L1346F 0.25 deleterious(0) probably_damaging(0.998) TCGA-39-5034-01 10 102750675 102750675 G T C10orf2 Missense_Mutation p.D548Y 0.41 deleterious(0.01) possibly_damaging(0.793) TCGA-39-5034-01 10 103922084 103922084 G T NOLC1 3'UTR 0.45 TCGA-39-5034-01 10 108412268 108412268 C A SORCS1 Nonsense_Mutation p.E783* 0.16 TCGA-39-5034-01 10 108469063 108469063 G T SORCS1 Missense_Mutation p.T354K 0.40 deleterious(0) possibly_damaging(0.454) TCGA-39-5034-01 10 111630600 111630600 C A XPNPEP1 Missense_Mutation p.G529W 0.39 deleterious(0) probably_damaging(1) TCGA-39-5034-01 10 117093859 117093859 C A ATRNL1 Silent p.T1035T 0.12 TCGA-39-5034-01 10 117884941 117884941 G T GFRA1 Nonsense_Mutation p.C187* 0.48 TCGA-39-5034-01 10 122334752 122334752 C A PPAPDC1A Silent p.P185P 0.39 TCGA-39-5034-01 10 124159890 124159890 C T PLEKHA1 Missense_Mutation p.A77V 0.14 tolerated(0.21) probably_damaging(0.999) TCGA-39-5034-01 10 124361448 124361448 G T DMBT1 Missense_Mutation p.C1160F 0.64 deleterious(0) probably_damaging(0.999) TCGA-39-5034-01 10 124598601 124598601 A C CUZD1 Missense_Mutation p.I127R 0.19 deleterious(0) probably_damaging(0.963) TCGA-39-5034-01 10 126631747 126631747 G T ZRANB1 Missense_Mutation p.D229Y 0.25 deleterious(0.01) possibly_damaging(0.862) TCGA-39-5034-01 10 24762199 24762199 G T KIAA1217 Missense_Mutation p.A297S 0.49 tolerated(0.2) possibly_damaging(0.755) TCGA-39-5034-01 10 26315340 26315340 G A MYO3A Missense_Mutation p.V278M 0.54 deleterious(0.02) benign(0.37) TCGA-39-5034-01 10 26802551 26802551 G T APBB1IP Nonsense_Mutation p.E259* 0.44 TCGA-39-5034-01 10 29704286 29704286 C A PTCHD3P1 Intron 0.53 TCGA-39-5034-01 10 33469097 33469097 C A NRP1 Missense_Mutation p.L893F 0.22 tolerated(0.05) probably_damaging(0.99) TCGA-39-5034-01 10 37430865 37430865 C A ANKRD30A Missense_Mutation p.S291Y 0.44 tolerated(0.36) benign(0.193) TCGA-39-5034-01 10 3827110 3827111 GC A KLF6 Frame_Shift_Del p.W32Cfs*6 0.55 TCGA-39-5034-01 10 38406908 38406908 G T ZNF37A Nonsense_Mutation p.G277* 0.35 TCGA-39-5034-01 10 46143984 46143984 T A ZFAND4 Splice_Site p.X110_splice 0.15 TCGA-39-5034-01 10 47087197 47087197 G A NPY4R Silent p.E138E 0.16 TCGA-39-5034-01 10 5415736 5415736 C A UCN3 Missense_Mutation p.P18H 0.47 deleterious(0) possibly_damaging(0.893) TCGA-39-5034-01 10 5567503 5567503 G T CALML3 3'UTR 0.50 TCGA-39-5034-01 10 55839090 55839090 C A PCDH15 Splice_Site p.X697_splice 0.19 TCGA-39-5034-01 10 61011252 61011252 G T FAM13C Intron 0.18 TCGA-39-5034-01 10 61844409 61844409 A G ANK3 Missense_Mutation p.L1342S 0.21 probably_damaging(0.999) TCGA-39-5034-01 10 69793815 69793815 C A HERC4 Nonsense_Mutation p.G198* 0.22 TCGA-39-5034-01 10 70958268 70958268 G T SUPV3L1 Silent p.R388R 0.18 TCGA-39-5034-01 10 71003049 71003049 G C HKDC1 Missense_Mutation p.G268A 0.40 deleterious(0.01) possibly_damaging(0.871) TCGA-39-5034-01 10 7218007 7218007 C A SFMBT2 Silent p.V643V 0.38 TCGA-39-5034-01 10 7409817 7409817 C A SFMBT2 Missense_Mutation p.G77V 0.43 deleterious(0) probably_damaging(1) TCGA-39-5034-01 10 7773812 7773812 T G ITIH2 Missense_Mutation p.N500K 0.18 tolerated(0.52) benign(0.013) TCGA-39-5034-01 10 8115925 8115925 C G GATA3 Missense_Mutation p.P425R 0.55 deleterious(0) probably_damaging(0.96) TCGA-39-5034-01 10 90762854 90762854 G A FAS Silent p.K33K 0.25 TCGA-39-5034-01 10 93608155 93608155 G T TNKS2 Missense_Mutation p.A792S 0.38 tolerated(0.43) benign(0.076) TCGA-39-5034-01 10 96522631 96522631 G T CYP2C19 Splice_Site p.X56_splice 0.20 TCGA-39-5034-01 10 96740944 96740944 A T CYP2C9 Missense_Mutation p.K322N 0.18 deleterious(0) possibly_damaging(0.614) TCGA-39-5034-01 10 97181781 97181781 G A SORBS1 Silent p.P126P 0.18 TCGA-39-5034-01 10 97919664 97919664 C G ZNF518A RNA 0.18 TCGA-39-5034-01 11 104896864 104896864 C A CASP1 3'UTR 0.30 TCGA-39-5034-01 11 106558399 106558399 C A GUCY1A2 Missense_Mutation p.G723V 0.18 deleterious(0.02) probably_damaging(0.996) TCGA-39-5034-01 11 106810231 106810231 C G GUCY1A2 Silent p.V387V 0.52 TCGA-39-5034-01 11 118343408 118343408 C T KMT2A Missense_Mutation p.P512S 0.50 probably_damaging(0.986) TCGA-39-5034-01 11 118343409 118343409 C T KMT2A Missense_Mutation p.P512L 0.50 probably_damaging(0.991) TCGA-39-5034-01 11 121060534 121060534 G A TECTA Silent p.G2104G 0.54 TCGA-39-5034-01 11 123847798 123847798 G A OR10S1 Missense_Mutation p.L201F 0.46 deleterious(0) probably_damaging(1) TCGA-39-5034-01 11 124252469 124252469 G T OR8B2 Missense_Mutation p.F257L 0.12 deleterious_low_confidence(0.04) benign(0.083) TCGA-39-5034-01 11 132290188 132290188 C A OPCML Splice_Site p.X313_splice 0.50 TCGA-39-5034-01 11 132306674 132306674 C A OPCML Splice_Site p.X222_splice 0.15 TCGA-39-5034-01 11 14156977 14156977 C A RNA5SP332 3'Flank 0.24 TCGA-39-5034-01 11 14989322 14989322 C A CALCA 3'Flank 0.22 TCGA-39-5034-01 11 14991479 14991479 A G CALCA Splice_Site p.X76_splice 0.27 TCGA-39-5034-01 11 1619127 1619127 A G KRTAP5-2 Silent p.C118C 0.24 TCGA-39-5034-01 11 22291872 22291872 G T ANO5 Missense_Mutation p.W638L 0.22 tolerated(0.29) benign(0.059) TCGA-39-5034-01 11 22291873 22291873 G T ANO5 Missense_Mutation p.W638C 0.23 deleterious(0) probably_damaging(0.959) TCGA-39-5034-01 11 30953457 30953457 G C DCDC1 Missense_Mutation p.P920A 0.26 deleterious(0.01) possibly_damaging(0.728) TCGA-39-5034-01 11 31125294 31125294 C A DCDC1 Missense_Mutation p.G592C 0.22 deleterious(0.03) possibly_damaging(0.882) TCGA-39-5034-01 11 3128546 3128546 G A OSBPL5 Missense_Mutation p.P336S 0.21 tolerated(0.11) benign(0.009) TCGA-39-5034-01 11 32954287 32954287 G A QSER1 Missense_Mutation p.V366I 0.28 tolerated(0.38) benign(0.08) TCGA-39-5034-01 11 35287277 35287277 C T SLC1A2 Missense_Mutation p.V484M 0.09 tolerated(0.08) benign(0.189) TCGA-39-5034-01 11 36484126 36484126 C A PRR5L Missense_Mutation p.A316D 0.12 tolerated(0.09) benign(0.002) TCGA-39-5034-01 11 36614707 36614707 C A RAG2 Missense_Mutation p.V338F 0.61 tolerated(0.41) benign(0.15) TCGA-39-5034-01 11 45927976 45927976 C G MAPK8IP1 3'UTR 0.16 TCGA-39-5034-01 11 46690990 46690990 G T ATG13 Missense_Mutation p.D495Y 0.41 deleterious(0) probably_damaging(0.997) TCGA-39-5034-01 11 48238431 48238431 G A OR4B1 Missense_Mutation p.V24I 0.16 tolerated(0.57) benign(0.003) TCGA-39-5034-01 11 48285862 48285862 C A OR4X1 Silent p.G150G 0.34 TCGA-39-5034-01 11 4903561 4903561 G A OR51T1 Silent p.L171L 0.22 TCGA-39-5034-01 11 4936224 4936224 C A OR51G2 Missense_Mutation p.A224S 0.33 deleterious(0) possibly_damaging(0.528) TCGA-39-5034-01 11 51411467 51411467 C A OR4A5 Missense_Mutation p.G310V 0.50 tolerated_low_confidence(0.11) benign(0) TCGA-39-5034-01 11 51515981 51515981 G T OR4C46 Missense_Mutation p.A234S 0.45 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-39-5034-01 11 55340479 55340479 G A OR4C16 Silent p.V292V 0.13 TCGA-39-5034-01 11 5536095 5536095 T A UBQLNL 3'UTR 0.16 TCGA-39-5034-01 11 5566400 5566400 C A OR52H1 Silent p.L118L 0.23 TCGA-39-5034-01 11 55761642 55761642 G T OR5F1 Missense_Mutation p.L154M 0.17 tolerated(0.14) probably_damaging(1) TCGA-39-5034-01 11 56127871 56127871 G T OR8J1 Missense_Mutation p.S50I 0.15 deleterious(0.04) benign(0.027) TCGA-39-5034-01 11 5758489 5758489 G A OR56B1 Missense_Mutation p.S248N 0.24 tolerated(0.17) benign(0.12) TCGA-39-5034-01 11 57995910 57995910 C T OR10Q1 Silent p.T146T 0.49 TCGA-39-5034-01 11 5878771 5878771 C G OR52E8 Silent p.V54V 0.26 TCGA-39-5034-01 11 59211350 59211350 C T OR5A1 Nonsense_Mutation p.R237* 0.14 TCGA-39-5034-01 11 60183663 60183663 C A MS4A14 Missense_Mutation p.Q441K 0.19 tolerated(0.11) benign(0.275) TCGA-39-5034-01 11 60636731 60636731 C G ZP1 Missense_Mutation p.L104V 0.11 tolerated(0.07) probably_damaging(0.994) TCGA-39-5034-01 11 61977960 61977960 A G SCGB2A1 Missense_Mutation p.E44G 0.13 tolerated(0.17) possibly_damaging(0.728) TCGA-39-5034-01 11 62381732 62381732 G A ROM1 Missense_Mutation p.R198Q 0.16 tolerated(0.09) benign(0.157) TCGA-39-5034-01 11 6245798 6245798 C G FAM160A2 5'UTR 0.41 TCGA-39-5034-01 11 63233663 63233663 C A HRASLS5 Missense_Mutation p.K222N 0.48 deleterious(0.01) probably_damaging(0.988) TCGA-39-5034-01 11 65146853 65146853 G A SLC25A45 Silent p.F111F 0.39 TCGA-39-5034-01 11 65337949 65337949 G T SSSCA1 5'UTR 0.21 TCGA-39-5034-01 11 65386129 65386129 G T PCNXL3 Silent p.P432P 0.16 TCGA-39-5034-01 11 66329058 66329058 C G CTSF 3'Flank 0.16 TCGA-39-5034-01 11 6643054 6643054 C T DCHS1 Missense_Mutation p.E3285K 0.46 deleterious(0.01) probably_damaging(0.95) TCGA-39-5034-01 11 6867351 6867351 T A OR10A5 Silent p.A146A 0.23 TCGA-39-5034-01 11 6891498 6891498 G T OR10A2 Silent p.V171V 0.28 TCGA-39-5034-01 11 70185386 70185386 G A PPFIA1 Missense_Mutation p.A561T 0.68 tolerated(0.13) benign(0.014) TCGA-39-5034-01 11 7022334 7022334 C A ZNF214 Nonsense_Mutation p.E194* 0.25 TCGA-39-5034-01 11 7063773 7063773 C A NLRP14 Silent p.T172T 0.13 TCGA-39-5034-01 11 73872552 73872552 T C C2CD3 Silent p.P125P 0.54 TCGA-39-5034-01 11 7847514 7847514 C A OR5P3 Silent p.G2G 0.14 TCGA-39-5034-01 11 7982478 7982478 G T NLRP10 Nonsense_Mutation p.C227* 0.26 TCGA-39-5034-01 11 85593592 85593592 C A CCDC83 Silent p.R73R 0.51 TCGA-39-5034-01 11 88780555 88780555 G T GRM5 Silent p.L162L 0.55 TCGA-39-5034-01 12 100887180 100887180 G T NR1H4 Missense_Mutation p.G27C 0.47 deleterious(0) probably_damaging(0.95) TCGA-39-5034-01 12 103288597 103288597 C A PAH Missense_Mutation p.A90S 0.23 tolerated(0.71) benign(0.003) TCGA-39-5034-01 12 113552632 113552632 G T RASAL1 Missense_Mutation p.P385H 0.38 deleterious(0) probably_damaging(1) TCGA-39-5034-01 12 113614720 113614720 C A DDX54 Missense_Mutation p.R226L 0.36 deleterious(0) probably_damaging(0.998) TCGA-39-5034-01 12 117426475 117426475 A T FBXW8 Missense_Mutation p.Y347F 0.42 tolerated(0.81) benign(0.001) TCGA-39-5034-01 12 117768269 117768269 G T NOS1 Missense_Mutation p.N202K 0.39 tolerated_low_confidence(0.16) benign(0.001) TCGA-39-5034-01 12 121756089 121756089 A G ANAPC5 Silent p.A628A 0.17 TCGA-39-5034-01 12 12794994 12794994 G A CREBL2 3'UTR 0.23 TCGA-39-5034-01 12 130922934 130922934 G T RIMBP2 Nonsense_Mutation p.Y527* 0.49 TCGA-39-5034-01 12 133196133 133196133 C A P2RX2 Missense_Mutation p.D94E 0.25 deleterious(0.01) possibly_damaging(0.767) TCGA-39-5034-01 12 133198429 133198429 T C P2RX2 Silent p.C455C 0.42 TCGA-39-5034-01 12 133721110 133721110 G T CTD-2140B24.4 Missense_Mutation p.R11L 0.36 tolerated(0.12) unknown(0) TCGA-39-5034-01 12 23998927 23998927 G A SOX5 Silent p.N157N 0.15 TCGA-39-5034-01 12 29617573 29617573 G A OVCH1 Silent p.D664D 0.33 TCGA-39-5034-01 12 29630302 29630302 G C OVCH1 Silent p.T406T 0.32 TCGA-39-5034-01 12 30872123 30872123 C A CAPRIN2 Intron 0.29 TCGA-39-5034-01 12 30872131 30872131 G C CAPRIN2 Intron 0.29 TCGA-39-5034-01 12 49359931 49359931 A G WNT10B Missense_Mutation p.Y373H 0.29 tolerated(0.15) possibly_damaging(0.899) TCGA-39-5034-01 12 50191005 50191005 C A NCKAP5L Missense_Mutation p.R213L 0.39 tolerated(0.08) benign(0.239) TCGA-39-5034-01 12 51097929 51097929 C T DIP2B Missense_Mutation p.P778S 0.26 deleterious(0.01) probably_damaging(0.994) TCGA-39-5034-01 12 5153838 5153838 C G KCNA5 Missense_Mutation p.I175M 0.35 deleterious(0) probably_damaging(0.999) TCGA-39-5034-01 12 51584253 51584253 C A POU6F1 Missense_Mutation p.G228V 0.45 tolerated(0.08) probably_damaging(0.957) TCGA-39-5034-01 12 51722306 51722306 T C CELA1 3'UTR 0.52 TCGA-39-5034-01 12 54756854 54756854 G T GPR84 Missense_Mutation p.A261D 0.34 tolerated(0.23) benign(0.009) TCGA-39-5034-01 12 54912986 54912986 G T NCKAP1L Missense_Mutation p.A499S 0.33 tolerated(0.92) benign(0.007) TCGA-39-5034-01 12 54925318 54925318 C A NCKAP1L Missense_Mutation p.S883Y 0.31 deleterious(0) probably_damaging(0.934) TCGA-39-5034-01 12 57106933 57106933 C A NACA Missense_Mutation p.E851D 0.28 deleterious_low_confidence(0.01) benign(0.234) TCGA-39-5034-01 12 57132290 57132290 C G PRIM1 Missense_Mutation p.D358H 0.21 deleterious(0.01) benign(0.365) TCGA-39-5034-01 12 58000887 58000887 G A DTX3 Missense_Mutation p.A81T 0.29 deleterious(0.03) possibly_damaging(0.811) TCGA-39-5034-01 12 58019018 58019018 G T SLC26A10 Splice_Site p.X460_splice 0.35 TCGA-39-5034-01 12 5853353 5853353 C A ANO2 Missense_Mutation p.V437F 0.28 deleterious(0.01) probably_damaging(1) TCGA-39-5034-01 12 70918351 70918351 A C PTPRB Missense_Mutation p.H2175Q 0.40 deleterious(0) probably_damaging(1) TCGA-39-5034-01 12 72425513 72425513 G T TPH2 3'UTR 0.38 TCGA-39-5034-01 12 80746150 80746150 T C OTOGL Missense_Mutation p.S1772P 0.11 deleterious(0) possibly_damaging(0.729) TCGA-39-5034-01 12 81101527 81101527 C A MYF6 Missense_Mutation p.S10Y 0.26 deleterious(0) possibly_damaging(0.899) TCGA-39-5034-01 12 81110714 81110714 C A MYF5 5'UTR 0.45 TCGA-39-5034-01 13 103508405 103508405 A T BIVM-ERCC5 Silent p.S583S 0.33 TCGA-39-5034-01 13 109707867 109707867 A G MYO16 Missense_Mutation p.I1065V 0.45 tolerated(0.48) benign(0.173) TCGA-39-5034-01 13 21736015 21736015 C A SKA3 Splice_Site p.X248_splice 0.41 TCGA-39-5034-01 13 28519465 28519465 G A ATP5EP2 Silent p.V23V 0.39 TCGA-39-5034-01 13 32903583 32903583 G T BRCA2 Missense_Mutation p.R212I 0.29 deleterious(0) possibly_damaging(0.483) TCGA-39-5034-01 13 35716473 35716473 A T NBEA Missense_Mutation p.T802S 0.17 tolerated(0.5) benign(0.117) TCGA-39-5034-01 13 36413238 36413238 G A DCLK1 Missense_Mutation p.P371S 0.31 tolerated(0.65) benign(0.009) TCGA-39-5034-01 13 36900786 36900786 C A SPG20 Missense_Mutation p.C405F 0.56 tolerated(0.3) benign(0.001) TCGA-39-5034-01 13 40239231 40239231 A T COG6 Splice_Site p.X124_splice 0.18 TCGA-39-5034-01 13 46544055 46544055 G A ZC3H13 Missense_Mutation p.S875F 0.24 unknown(0) TCGA-39-5034-01 13 46721058 46721058 A T LCP1 Missense_Mutation p.W387R 0.22 tolerated(0.33) benign(0.025) TCGA-39-5034-01 13 49281913 49281913 C A CYSLTR2 Silent p.L320L 0.19 TCGA-39-5034-01 13 52639526 52639526 T C NEK5 3'UTR 0.19 TCGA-39-5034-01 13 52960191 52960191 G A THSD1 Silent p.A384A 0.15 TCGA-39-5034-01 13 53421165 53421165 G A PCDH8 Silent p.A469A 0.55 TCGA-39-5034-01 13 84454704 84454704 G T SLITRK1 Silent p.G313G 0.17 TCGA-39-5034-01 13 92408573 92408573 G T GPC5 Silent p.L393L 0.42 TCGA-39-5034-01 14 100157439 100157439 C A CYP46A1 Silent p.P47P 0.22 TCGA-39-5034-01 14 100563886 100563886 G T EVL Missense_Mutation p.W83C 0.14 deleterious(0) probably_damaging(1) TCGA-39-5034-01 14 102028663 102028663 C T DIO3 Missense_Mutation p.P277L 0.20 deleterious(0) probably_damaging(0.998) TCGA-39-5034-01 14 106173853 106173853 C T IGHA1 Silent p.E238E 0.24 TCGA-39-5034-01 14 106494297 106494297 G T IGHV2-5 Silent p.A65A 0.31 TCGA-39-5034-01 14 107170178 107170178 G T IGHV1-69 Missense_Mutation p.S35Y 0.29 deleterious(0) possibly_damaging(0.703) TCGA-39-5034-01 14 19553812 19553812 G A POTEG Silent p.R132R 0.09 TCGA-39-5034-01 14 20215670 20215670 C A OR4Q3 Missense_Mutation p.F28L 0.10 deleterious(0.03) benign(0.008) TCGA-39-5034-01 14 20483346 20483346 G T OR4K14 Missense_Mutation p.P3T 0.37 tolerated(0.4) benign(0) TCGA-39-5034-01 14 22362785 22362785 G T TRAV8-4 Silent p.L15L 0.16 TCGA-39-5034-01 14 23020905 23020905 T A AE000662.92 5'Flank 0.20 TCGA-39-5034-01 14 23374858 23374858 C A RBM23 Nonsense_Mutation p.G138* 0.15 TCGA-39-5034-01 14 23883054 23883054 C A MYH7 Nonsense_Mutation p.E1902* 0.21 TCGA-39-5034-01 14 33293416 33293416 A T AKAP6 Missense_Mutation p.S2133C 0.37 deleterious(0) probably_damaging(0.935) TCGA-39-5034-01 14 34266746 34266746 C A NPAS3 Missense_Mutation p.S462Y 0.38 deleterious(0) probably_damaging(0.962) TCGA-39-5034-01 14 35577444 35577444 T C PPP2R3C Splice_Site p.X135_splice 0.17 TCGA-39-5034-01 14 39565121 39565121 C T SEC23A Missense_Mutation p.A68T 0.18 deleterious(0) benign(0.399) TCGA-39-5034-01 14 47120558 47120558 G T RPL10L Silent p.R128R 0.27 TCGA-39-5034-01 14 59112336 59112336 C G DACT1 Missense_Mutation p.P332R 0.25 deleterious(0) probably_damaging(1) TCGA-39-5034-01 14 60921845 60921845 T A C14orf39 Silent p.A459A 0.23 TCGA-39-5034-01 14 62261686 62261686 G T SNAPC1 Missense_Mutation p.K364N 0.14 deleterious(0.01) benign(0.102) TCGA-39-5034-01 14 71444817 71444817 G T PCNX Missense_Mutation p.G588V 0.42 deleterious_low_confidence(0.03) benign(0.093) TCGA-39-5034-01 14 81223252 81223252 C A CEP128 Missense_Mutation p.W866L 0.19 deleterious(0) probably_damaging(0.999) TCGA-39-5034-01 14 81743830 81743830 C T STON2 Missense_Mutation p.A609T 0.13 tolerated(0.24) possibly_damaging(0.572) TCGA-39-5034-01 14 94083500 94083500 C A UNC79 Missense_Mutation p.H1181Q 0.19 tolerated(0.56) benign(0.032) TCGA-39-5034-01 14 95562292 95562292 T C DICER1 Silent p.A1655A 0.21 TCGA-39-5034-01 14 95918675 95918676 - C SYNE3 Frame_Shift_Ins p.L395Afs*20 0.40 TCGA-39-5034-01 15 100801732 100801732 C A ADAMTS17 Missense_Mutation p.G328V 0.62 deleterious(0.01) probably_damaging(1) TCGA-39-5034-01 15 100801733 100801733 C A ADAMTS17 Missense_Mutation p.G328C 0.61 deleterious(0) probably_damaging(1) TCGA-39-5034-01 15 20644060 20644060 A T HERC2P3 RNA 0.58 TCGA-39-5034-01 15 24921762 24921762 C A NPAP1 Silent p.R250R 0.44 TCGA-39-5034-01 15 25451489 25451489 C A SNORD115-20 RNA 0.48 TCGA-39-5034-01 15 33876610 33876610 G - RYR3 Frame_Shift_Del p.G530Efs*23 0.43 TCGA-39-5034-01 15 33952493 33952493 C G RYR3 Silent p.P1497P 0.44 TCGA-39-5034-01 15 45409796 45409796 C A DUOXA1 Missense_Mutation p.D457Y 0.48 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-39-5034-01 15 53081441 53081441 G T ONECUT1 Missense_Mutation p.T214N 0.48 tolerated(0.08) benign(0.013) TCGA-39-5034-01 15 63362165 63362165 G T TPM1 Intron 0.57 TCGA-39-5034-01 15 65412257 65412257 T C PDCD7 Missense_Mutation p.T349A 0.58 tolerated(0.12) benign(0.002) TCGA-39-5034-01 15 68434639 68434639 G T PIAS1 Missense_Mutation p.G189V 0.52 deleterious(0) possibly_damaging(0.879) TCGA-39-5034-01 15 69003967 69003967 G T CORO2B Silent p.T190T 0.60 TCGA-39-5034-01 16 12061644 12061644 C A TNFRSF17 Nonsense_Mutation p.C165* 0.29 TCGA-39-5034-01 16 14355188 14355188 G T MKL2 Missense_Mutation p.D1013Y 0.40 deleterious(0) probably_damaging(1) TCGA-39-5034-01 16 15112715 15112715 A C PDXDC1 Missense_Mutation p.T328P 0.18 deleterious(0.01) probably_damaging(0.979) TCGA-39-5034-01 16 18846364 18846364 C A SMG1 Missense_Mutation p.R2727L 0.35 deleterious(0.03) probably_damaging(0.982) TCGA-39-5034-01 16 20359828 20359828 C A UMOD Missense_Mutation p.K265N 0.30 deleterious(0) probably_damaging(0.996) TCGA-39-5034-01 16 20451738 20451738 T A ACSM5 Missense_Mutation p.W577R 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-39-5034-01 16 20781576 20781576 G A ACSM3 Splice_Site p.X73_splice 0.13 TCGA-39-5034-01 16 22579832 22579832 G T RP11-368J21.3 RNA 0.12 TCGA-39-5034-01 16 23359992 23359992 G T SCNN1B Missense_Mutation p.E24D 0.39 tolerated(0.09) probably_damaging(0.998) TCGA-39-5034-01 16 23712018 23712018 G T ERN2 Missense_Mutation p.P504Q 0.31 tolerated(0.71) benign(0.009) TCGA-39-5034-01 16 24921747 24921747 A T SLC5A11 Missense_Mutation p.S591C 0.28 tolerated(0.07) benign(0.289) TCGA-39-5034-01 16 27357815 27357815 C G IL4R Missense_Mutation p.T130R 0.04 deleterious(0) possibly_damaging(0.543) TCGA-39-5034-01 16 27374975 27374975 G T IL4R Missense_Mutation p.G768W 0.31 deleterious(0) probably_damaging(0.987) TCGA-39-5034-01 16 34712245 34712245 G A RP11-80F22.9 RNA 0.53 TCGA-39-5034-01 16 48212593 48212593 G T ABCC11 Missense_Mutation p.A1088E 0.45 deleterious(0) possibly_damaging(0.838) TCGA-39-5034-01 16 49671070 49671070 G T ZNF423 Missense_Mutation p.P665T 0.40 tolerated(0.15) probably_damaging(0.998) TCGA-39-5034-01 16 49672647 49672647 G T ZNF423 Missense_Mutation p.P139H 0.16 deleterious(0) probably_damaging(0.989) TCGA-39-5034-01 16 55703493 55703493 G A SLC6A2 Silent p.P97P 0.40 TCGA-39-5034-01 16 58438424 58438424 C T GINS3 Missense_Mutation p.R187C 0.19 deleterious(0) probably_damaging(0.959) TCGA-39-5034-01 16 70395414 70395414 G T DDX19A Splice_Site p.X129_splice 0.53 TCGA-39-5034-01 16 70941346 70941346 G C HYDIN Missense_Mutation p.I2815M 0.15 possibly_damaging(0.844) TCGA-39-5034-01 16 71318514 71318514 C G CMTR2 Missense_Mutation p.R437T 0.29 deleterious(0.01) possibly_damaging(0.649) TCGA-39-5034-01 16 74455196 74455196 G T CLEC18B 5'UTR 0.17 TCGA-39-5034-01 16 89715876 89715876 G A CHMP1A Silent p.A45A 0.44 TCGA-39-5034-01 16 90162301 90162301 C A TUBB8P7 RNA 0.16 TCGA-39-5034-01 17 10222464 10222464 T G MYH13 Missense_Mutation p.E1127D 0.56 tolerated(0.06) benign(0.279) TCGA-39-5034-01 17 11583171 11583171 C T DNAH9 Missense_Mutation p.H1151Y 0.44 benign(0.003) TCGA-39-5034-01 17 26086079 26086079 C T NOS2 Missense_Mutation p.R1061Q 0.48 tolerated(0.6) benign(0.037) TCGA-39-5034-01 17 26087112 26087112 T C NOS2 Missense_Mutation p.K1035E 0.46 tolerated(0.3) possibly_damaging(0.626) TCGA-39-5034-01 17 27402033 27402033 C A TIAF1 5'UTR 0.39 TCGA-39-5034-01 17 27402034 27402034 C A TIAF1 5'UTR 0.39 TCGA-39-5034-01 17 2995893 2995893 G T OR1D2 Missense_Mutation p.T133N 0.47 deleterious(0.05) benign(0.197) TCGA-39-5034-01 17 33475376 33475376 G T UNC45B Missense_Mutation p.A32S 0.35 deleterious(0) possibly_damaging(0.783) TCGA-39-5034-01 17 34149665 34149665 C T TAF15 Silent p.S104S 0.14 TCGA-39-5034-01 17 38078819 38078819 C A ORMDL3 Missense_Mutation p.G149V 0.36 deleterious(0) probably_damaging(0.988) TCGA-39-5034-01 17 40330349 40330349 C T KCNH4 Missense_Mutation p.E153K 0.20 tolerated(0.13) possibly_damaging(0.561) TCGA-39-5034-01 17 43348542 43348542 C T MAP3K14-AS1 3'Flank 0.27 TCGA-39-5034-01 17 44060974 44060974 T C MAPT Silent p.P268P 0.16 TCGA-39-5034-01 17 44949982 44949982 G T WNT9B Missense_Mutation p.K59N 0.16 deleterious(0.02) benign(0.084) TCGA-39-5034-01 17 48246512 48246512 C G SGCA Missense_Mutation p.S215C 0.30 deleterious(0) probably_damaging(0.951) TCGA-39-5034-01 17 51900544 51900544 C T KIF2B Silent p.N50N 0.39 TCGA-39-5034-01 17 51900601 51900601 G C KIF2B Missense_Mutation p.K69N 0.18 deleterious(0) probably_damaging(0.998) TCGA-39-5034-01 17 56352921 56352921 G T MPO Silent p.I449I 0.28 TCGA-39-5034-01 17 57816205 57816205 A C VMP1 Missense_Mutation p.Q104P 0.42 tolerated(0.11) benign(0.121) TCGA-39-5034-01 17 60342465 60342465 A G TBC1D3P2 3'Flank 0.14 TCGA-39-5034-01 17 60342514 60342514 G T TBC1D3P2 3'Flank 0.13 TCGA-39-5034-01 17 63685244 63685244 T A CEP112 Intron 0.24 TCGA-39-5034-01 17 65942265 65942265 G C BPTF Missense_Mutation p.V2481L 0.22 probably_damaging(0.949) TCGA-39-5034-01 17 66985234 66985234 G A ABCA9 Silent p.H1327H 0.35 TCGA-39-5034-01 17 73038739 73038739 C A ATP5H Missense_Mutation p.G3W 0.34 deleterious(0) probably_damaging(0.995) TCGA-39-5034-01 17 74714765 74714765 C A JMJD6 Intron 0.41 TCGA-39-5034-01 17 74714766 74714766 C T JMJD6 Intron 0.42 TCGA-39-5034-01 17 7578257 7578257 C A TP53 Nonsense_Mutation p.E198* 0.58 TCGA-39-5034-01 17 79995529 79995529 C A DCXR Silent p.V10V 0.29 TCGA-39-5034-01 17 8770874 8770874 C A PIK3R6 5'UTR 0.57 TCGA-39-5034-01 18 20878006 20878006 C G TMEM241 Missense_Mutation p.A286P 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-39-5034-01 18 22048786 22048786 G A HRH4 Silent p.T76T 0.18 TCGA-39-5034-01 18 28906563 28906563 G A DSG1 Missense_Mutation p.S23N 0.20 deleterious(0.02) possibly_damaging(0.833) TCGA-39-5034-01 18 28971155 28971155 C A DSG4 Missense_Mutation p.P267T 0.29 deleterious(0) probably_damaging(1) TCGA-39-5034-01 18 39595519 39595519 G T PIK3C3 Nonsense_Mutation p.E469* 0.40 TCGA-39-5034-01 18 43219729 43219729 G T SLC14A2 Missense_Mutation p.V288F 0.36 deleterious(0.01) benign(0.285) TCGA-39-5034-01 18 44424715 44424715 C A PIAS2 Missense_Mutation p.D317Y 0.10 deleterious(0) possibly_damaging(0.506) TCGA-39-5034-01 18 45567082 45567082 C A ZBTB7C Missense_Mutation p.G133W 0.41 deleterious(0) probably_damaging(0.985) TCGA-39-5034-01 18 50848448 50848448 G C DCC Missense_Mutation p.Q695H 0.26 deleterious(0) probably_damaging(0.981) TCGA-39-5034-01 18 5291744 5291744 C A ZBTB14 Missense_Mutation p.A155S 0.19 tolerated(0.66) benign(0) TCGA-39-5034-01 18 56246789 56246789 G T ALPK2 Missense_Mutation p.P407T 0.21 tolerated(0.06) possibly_damaging(0.559) TCGA-39-5034-01 18 56246794 56246794 G T ALPK2 Nonsense_Mutation p.S405* 0.22 TCGA-39-5034-01 18 61323107 61323107 C - SERPINB3 Frame_Shift_Del p.S320Afs*30 0.39 TCGA-39-5034-01 18 61650841 61650841 G A SERPINB8 Silent p.G151G 0.34 TCGA-39-5034-01 18 63547639 63547639 T C CDH7 Silent p.L623L 0.21 TCGA-39-5034-01 18 63548130 63548130 G T CDH7 Nonstop_Mutation p.*786Yext*21 0.34 TCGA-39-5034-01 18 67776880 67776880 C T RTTN Missense_Mutation p.D1253N 0.20 deleterious(0.03) probably_damaging(1) TCGA-39-5034-01 18 67776881 67776881 C A RTTN Silent p.T1252T 0.19 TCGA-39-5034-01 18 9256856 9256856 G T ANKRD12 Silent p.P1197P 0.42 TCGA-39-5034-01 18 9887971 9887971 G C TXNDC2 Missense_Mutation p.D499H 0.43 deleterious(0) probably_damaging(0.999) TCGA-39-5034-01 19 10599915 10599915 C T KEAP1 Missense_Mutation p.R554Q 0.56 deleterious(0) probably_damaging(0.982) TCGA-39-5034-01 19 10798131 10798131 C T ILF3 Silent p.N727N 0.60 TCGA-39-5034-01 19 1221336 1221336 A T STK11 Nonsense_Mutation p.K287* 0.79 TCGA-39-5034-01 19 12461017 12461017 T C ZNF442 Missense_Mutation p.Y461C 0.42 deleterious(0) probably_damaging(0.974) TCGA-39-5034-01 19 13226521 13226521 C A TRMT1 Missense_Mutation p.E124D 0.50 tolerated(0.23) benign(0.012) TCGA-39-5034-01 19 14829574 14829574 G T ZNF333 Nonsense_Mutation p.E479* 0.47 TCGA-39-5034-01 19 15852941 15852941 C T OR10H3 Missense_Mutation p.L247F 0.60 deleterious(0.01) possibly_damaging(0.831) TCGA-39-5034-01 19 17664371 17664371 G A FAM129C Silent p.%3D 0.26 TCGA-39-5034-01 19 17664373 17664373 G A FAM129C 3'UTR 0.26 TCGA-39-5034-01 19 17664524 17664524 G C FAM129C 3'UTR 0.33 TCGA-39-5034-01 19 18171935 18171935 C T IL12RB1 Silent p.K596K 0.26 TCGA-39-5034-01 19 20229836 20229836 G T ZNF90 Missense_Mutation p.K491N 0.29 tolerated(1) benign(0.007) TCGA-39-5034-01 19 20727247 20727247 C G ZNF737 3'UTR 0.57 TCGA-39-5034-01 19 22272247 22272247 G T ZNF257 3'UTR 0.28 TCGA-39-5034-01 19 22575548 22575548 A G ZNF98 Silent p.F163F 0.11 TCGA-39-5034-01 19 23544215 23544215 T A ZNF91 Missense_Mutation p.E522D 0.31 tolerated(0.11) possibly_damaging(0.686) TCGA-39-5034-01 19 24010608 24010608 G T RPSAP58 Missense_Mutation p.Q215H 0.27 deleterious(0) probably_damaging(0.966) TCGA-39-5034-01 19 2794886 2794886 G T THOP1 Silent p.V118V 0.58 TCGA-39-5034-01 19 31039000 31039000 T A ZNF536 Missense_Mutation p.M825K 0.54 tolerated(0.34) benign(0.013) TCGA-39-5034-01 19 31770327 31770327 G A TSHZ3 Silent p.N124N 0.47 TCGA-39-5034-01 19 33117732 33117732 C A ANKRD27 Silent p.G474G 0.18 TCGA-39-5034-01 19 33117733 33117733 C A ANKRD27 Missense_Mutation p.G474V 0.19 deleterious(0) probably_damaging(0.988) TCGA-39-5034-01 19 35850689 35850689 C T FFAR3 Silent p.G299G 0.20 TCGA-39-5034-01 19 36210785 36210785 G T KMT2B Missense_Mutation p.R179L 0.54 unknown(0) TCGA-39-5034-01 19 36322025 36322025 C T NPHS1 Silent p.P1137P 0.27 TCGA-39-5034-01 19 36545186 36545186 C G THAP8 5'UTR 0.45 TCGA-39-5034-01 19 36595448 36595448 T A WDR62 Silent p.P1394P 0.21 TCGA-39-5034-01 19 37117037 37117037 G A ZNF382 Missense_Mutation p.D80N 0.23 tolerated(0.52) benign(0.002) TCGA-39-5034-01 19 38229243 38229243 G C ZNF573 3'UTR 0.43 TCGA-39-5034-01 19 38951070 38951070 G A RYR1 Missense_Mutation p.G806S 0.30 probably_damaging(0.925) TCGA-39-5034-01 19 38976665 38976665 G T RYR1 Silent p.G1790G 0.43 TCGA-39-5034-01 19 38993256 38993256 G C RYR1 Missense_Mutation p.R2575P 0.35 benign(0.152) TCGA-39-5034-01 19 39019652 39019652 A G RYR1 Missense_Mutation p.H3699R 0.33 benign(0.013) TCGA-39-5034-01 19 39998578 39998578 G - DLL3 Frame_Shift_Del p.L595Yfs*23 0.26 TCGA-39-5034-01 19 40380262 40380262 C T FCGBP Missense_Mutation p.G3685S 0.32 probably_damaging(0.961) TCGA-39-5034-01 19 40901907 40901907 T C PRX Silent p.L784L 0.11 TCGA-39-5034-01 19 41388158 41388158 C - CYP2A7 5'UTR 0.18 TCGA-39-5034-01 19 41630672 41630672 C A CYP2F1 Missense_Mutation p.P338Q 0.65 deleterious(0) probably_damaging(0.961) TCGA-39-5034-01 19 43343523 43343523 T C PSG10P 3'Flank 0.20 TCGA-39-5034-01 19 43343881 43343881 A G PSG10P 3'Flank 0.31 TCGA-39-5034-01 19 43439766 43439766 C A PSG7 Missense_Mutation p.D74Y 0.47 deleterious(0.04) benign(0.01) TCGA-39-5034-01 19 43702376 43702376 G A PSG4 Missense_Mutation p.A161V 0.21 tolerated(0.52) benign(0.05) TCGA-39-5034-01 19 4429718 4429718 A G CHAF1A Missense_Mutation p.Y596C 0.53 deleterious(0) probably_damaging(1) TCGA-39-5034-01 19 44932558 44932558 C A ZNF229 Missense_Mutation p.V800L 0.71 tolerated(0.34) benign(0.174) TCGA-39-5034-01 19 44933808 44933808 C A ZNF229 Missense_Mutation p.G383V 0.68 deleterious(0) probably_damaging(0.998) TCGA-39-5034-01 19 45767979 45767979 G T MARK4 Silent p.L131L 0.17 TCGA-39-5034-01 19 46299142 46299142 C T RSPH6A Silent p.E713E 0.70 TCGA-39-5034-01 19 46914899 46914899 T A CCDC8 Missense_Mutation p.N390I 0.67 benign(0.337) TCGA-39-5034-01 19 46997171 46997171 T C PNMAL2 Missense_Mutation p.T518A 0.26 tolerated_low_confidence(0.41) unknown(0) TCGA-39-5034-01 19 48733728 48733728 C A CARD8 Missense_Mutation p.L334F 0.29 deleterious(0) probably_damaging(0.985) TCGA-39-5034-01 19 49878207 49878207 C A DKKL1 Silent p.T217T 0.30 TCGA-39-5034-01 19 50128916 50128916 A G PRR12 3'UTR 0.28 TCGA-39-5034-01 19 50248523 50248523 C A TSKS Nonsense_Mutation p.E375* 0.41 TCGA-39-5034-01 19 51207409 51207409 T A SHANK1 Missense_Mutation p.E397V 0.31 probably_damaging(0.994) TCGA-39-5034-01 19 51217449 51217449 C T SHANK1 Silent p.S210S 0.11 TCGA-39-5034-01 19 51671394 51671394 G A CTD-3187F8.14 Intron 0.19 TCGA-39-5034-01 19 51830362 51830362 C G IGLON5 Missense_Mutation p.S225R 0.26 deleterious(0.02) benign(0.059) TCGA-39-5034-01 19 51885708 51885708 G T LIM2 Silent p.R139R 0.29 TCGA-39-5034-01 19 51918268 51918268 G T SIGLEC10 Silent p.R475R 0.31 TCGA-39-5034-01 19 52003330 52003330 C A SIGLEC12 Missense_Mutation p.G218C 0.34 deleterious(0) probably_damaging(1) TCGA-39-5034-01 19 52132636 52132636 C G SIGLEC5 Missense_Mutation p.E225D 0.57 deleterious(0.03) benign(0.238) TCGA-39-5034-01 19 52216772 52216772 C T HAS1 Missense_Mutation p.V549M 0.07 tolerated(0.11) benign(0.122) TCGA-39-5034-01 19 52219638 52219638 A G HAS1 Missense_Mutation p.L311P 0.11 deleterious(0) possibly_damaging(0.812) TCGA-39-5034-01 19 54175242 54175242 G T MIR1323 RNA 0.16 TCGA-39-5034-01 19 54445574 54445574 C A CACNG7 3'UTR 0.19 TCGA-39-5034-01 19 54503016 54503016 G T CACNG6 Missense_Mutation p.G179C 0.19 tolerated(0.14) probably_damaging(0.978) TCGA-39-5034-01 19 5456261 5456261 C A ZNRF4 Silent p.T253T 0.46 TCGA-39-5034-01 19 54567102 54567102 G T VSTM1 5'UTR 0.13 TCGA-39-5034-01 19 54754670 54754670 C A LILRB5 Missense_Mutation p.A586S 0.54 deleterious(0.01) possibly_damaging(0.532) TCGA-39-5034-01 19 54824286 54824286 C A LILRA5 Splice_Site p.X1_splice 0.09 TCGA-39-5034-01 19 55177372 55177372 C A LILRB4 Missense_Mutation p.H288Q 0.26 tolerated(0.3) benign(0.154) TCGA-39-5034-01 19 55331201 55331201 C A KIR3DL1 Missense_Mutation p.P130Q 0.44 deleterious(0.05) probably_damaging(0.943) TCGA-39-5034-01 19 55604386 55604386 C T PPP1R12C Missense_Mutation p.R608K 0.34 tolerated(0.24) probably_damaging(0.965) TCGA-39-5034-01 19 56170580 56170580 G T U2AF2 Silent p.R18R 0.39 TCGA-39-5034-01 19 56499243 56499243 G T NLRP8 Silent p.T1037T 0.26 TCGA-39-5034-01 19 56511141 56511141 C A NLRP5 Missense_Mutation p.A17E 0.28 tolerated_low_confidence(0.89) unknown(0) TCGA-39-5034-01 19 57640117 57640117 C G USP29 Missense_Mutation p.A25G 0.17 deleterious(0.01) possibly_damaging(0.534) TCGA-39-5034-01 19 57672141 57672141 C A DUXA Missense_Mutation p.R17L 0.20 deleterious(0) probably_damaging(0.979) TCGA-39-5034-01 19 57956292 57956292 C G ZNF749 Missense_Mutation p.F592L 0.09 tolerated(0.25) possibly_damaging(0.787) TCGA-39-5034-01 19 6433572 6433572 C T SLC25A41 Missense_Mutation p.G45S 0.36 tolerated(0.09) possibly_damaging(0.744) TCGA-39-5034-01 19 677861 677861 G A FSTL3 Missense_Mutation p.R58Q 0.56 tolerated(0.54) benign(0.001) TCGA-39-5034-01 19 6928262 6928262 A T EMR1 Intron 0.62 TCGA-39-5034-01 19 8196637 8196637 C A FBN3 Missense_Mutation p.Q597H 0.61 tolerated(0.14) benign(0.005) TCGA-39-5034-01 19 8808467 8808467 C A ACTL9 Silent p.V195V 0.51 TCGA-39-5034-01 19 9083058 9083058 G T MUC16 Missense_Mutation p.D2919E 0.57 unknown(0) TCGA-39-5034-01 1 11103546 11103546 G T MASP2 Missense_Mutation p.S197R 0.47 deleterious(0.04) probably_damaging(0.928) TCGA-39-5034-01 1 145460197 145460197 C A POLR3GL Missense_Mutation p.G9V 0.36 deleterious(0) probably_damaging(0.997) TCGA-39-5034-01 1 150204257 150204257 T A ANP32E Missense_Mutation p.E21V 0.29 deleterious(0) probably_damaging(0.963) TCGA-39-5034-01 1 152187525 152187525 G A HRNR Missense_Mutation p.H2194Y 0.09 unknown(0) TCGA-39-5034-01 1 152193356 152193356 C G HRNR Missense_Mutation p.G250A 0.33 unknown(0) TCGA-39-5034-01 1 152280798 152280798 A C FLG Missense_Mutation p.S2188R 0.05 benign(0.307) TCGA-39-5034-01 1 152281066 152281066 T A FLG Missense_Mutation p.Q2099L 0.21 benign(0.069) TCGA-39-5034-01 1 152282523 152282523 C A FLG Silent p.S1613S 0.30 TCGA-39-5034-01 1 152287852 152287852 T A FLG Silent p.T27T 0.34 TCGA-39-5034-01 1 152325098 152325098 C A FLG2 Nonsense_Mutation p.G1722* 0.34 TCGA-39-5034-01 1 152648494 152648494 G T LCE2C Translation_Start_Site p.M1? 0.37 tolerated_low_confidence(0.23) unknown(0) TCGA-39-5034-01 1 153659802 153659802 G T NPR1 Missense_Mutation p.D688Y 0.18 deleterious(0) possibly_damaging(0.529) TCGA-39-5034-01 1 153965259 153965259 G A NUP210L 3'UTR 0.35 TCGA-39-5034-01 1 154574334 154574334 G A ADAR Missense_Mutation p.P262S 0.15 tolerated(0.23) unknown(0) TCGA-39-5034-01 1 158581176 158581176 G C SPTA1 Missense_Mutation p.L2380V 0.45 deleterious(0) probably_damaging(0.999) TCGA-39-5034-01 1 158641985 158641985 A G SPTA1 Missense_Mutation p.M451T 0.49 deleterious(0.01) possibly_damaging(0.854) TCGA-39-5034-01 1 159284060 159284060 G C OR10J3 Silent p.P130P 0.51 TCGA-39-5034-01 1 160721171 160721171 G T SLAMF7 Missense_Mutation p.R269L 0.53 tolerated(0.06) benign(0.004) TCGA-39-5034-01 1 166990328 166990328 A T MAEL Missense_Mutation p.R350W 0.59 deleterious(0) probably_damaging(0.924) TCGA-39-5034-01 1 167096856 167096856 A T DUSP27 Missense_Mutation p.N830Y 0.62 deleterious(0) benign(0.071) TCGA-39-5034-01 1 16727273 16727273 T A SPATA21 Silent p.S372S 0.38 TCGA-39-5034-01 1 167817641 167817641 C T ADCY10 Missense_Mutation p.G799S 0.52 tolerated(0.11) possibly_damaging(0.78) TCGA-39-5034-01 1 173493920 173493920 T C SLC9C2 Missense_Mutation p.K838E 0.08 deleterious(0.02) benign(0.245) TCGA-39-5034-01 1 17410279 17410279 G A PADI2 Missense_Mutation p.T331I 0.27 deleterious(0.02) benign(0.026) TCGA-39-5034-01 1 175066791 175066792 - A TNN Frame_Shift_Ins p.K611Efs*3 0.26 TCGA-39-5034-01 1 175335253 175335255 AGG T TNR Frame_Shift_Del p.D691Efs*23 0.13 TCGA-39-5034-01 1 175365714 175365714 G T TNR Silent p.I402I 0.28 TCGA-39-5034-01 1 176564681 176564681 C A PAPPA2 Silent p.P647P 0.20 TCGA-39-5034-01 1 176668478 176668478 G T PAPPA2 Missense_Mutation p.G997C 0.36 deleterious(0) probably_damaging(0.998) TCGA-39-5034-01 1 177001897 177001897 G T ASTN1 Missense_Mutation p.P187Q 0.30 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-39-5034-01 1 177927267 177927267 C A SEC16B Missense_Mutation p.K455N 0.38 deleterious(0) probably_damaging(0.981) TCGA-39-5034-01 1 181684510 181684510 G T CACNA1E Missense_Mutation p.G403V 0.30 tolerated(0.05) probably_damaging(0.953) TCGA-39-5034-01 1 181767478 181767478 C G CACNA1E Missense_Mutation p.S2150R 0.27 deleterious(0.01) probably_damaging(0.944) TCGA-39-5034-01 1 183212606 183212606 G C LAMC2 3'UTR 0.33 TCGA-39-5034-01 1 184677374 184677374 T C EDEM3 Silent p.V650V 0.38 TCGA-39-5034-01 1 186313061 186313061 T C TPR Silent p.Q1193Q 0.36 TCGA-39-5034-01 1 190195404 190195404 G T BRINP3 Missense_Mutation p.Q257K 0.25 tolerated(0.28) benign(0.057) TCGA-39-5034-01 1 196696067 196696067 G T CFH Missense_Mutation p.V745L 0.49 deleterious(0.03) benign(0.247) TCGA-39-5034-01 1 197031995 197031995 C A F13B Missense_Mutation p.R86M 0.55 deleterious(0.01) possibly_damaging(0.897) TCGA-39-5034-01 1 201915316 201915316 C G LMOD1 Missense_Mutation p.Q51H 0.36 probably_damaging(0.999) TCGA-39-5034-01 1 203026076 203026076 A T PPFIA4 Missense_Mutation p.H296L 0.72 tolerated(0.57) benign(0.001) TCGA-39-5034-01 1 203185938 203185938 C A CHIT1 3'UTR 0.63 TCGA-39-5034-01 1 210015739 210015739 G A DIEXF Missense_Mutation p.D539N 0.52 tolerated(0.38) benign(0.068) TCGA-39-5034-01 1 217793699 217793699 T G GPATCH2 Missense_Mutation p.K67Q 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-39-5034-01 1 229567282 229567282 C A ACTA1 Missense_Mutation p.E366D 0.61 tolerated_low_confidence(0.05) possibly_damaging(0.57) TCGA-39-5034-01 1 235647641 235647641 T C B3GALNT2 Silent p.Q184Q 0.53 TCGA-39-5034-01 1 237872368 237872368 C A RYR2 Missense_Mutation p.P3371H 0.69 probably_damaging(0.997) TCGA-39-5034-01 1 238051712 238051712 G T ZP4 Missense_Mutation p.L167I 0.61 tolerated(0.2) benign(0.12) TCGA-39-5034-01 1 247902460 247902460 C A OR14K1 Missense_Mutation p.L182I 0.47 deleterious(0.04) probably_damaging(0.987) TCGA-39-5034-01 1 248039431 248039431 G T TRIM58 Silent p.L367L 0.19 TCGA-39-5034-01 1 248039454 248039454 C T TRIM58 Missense_Mutation p.P375L 0.42 tolerated(0.81) benign(0.147) TCGA-39-5034-01 1 248637320 248637320 C T OR2T3 Silent p.Y223Y 0.46 TCGA-39-5034-01 1 248814185 248814185 T C OR2T27 Translation_Start_Site p.M1? 0.30 deleterious(0.02) benign(0.411) TCGA-39-5034-01 1 39783009 39783009 G C MACF1 Missense_Mutation p.E1243Q 0.61 benign(0.156) TCGA-39-5034-01 1 43824818 43824818 C G CDC20 5'UTR 0.59 TCGA-39-5034-01 1 44087717 44087717 G C PTPRF 3'UTR 0.64 TCGA-39-5034-01 1 64686585 64686585 T C UBE2U Silent p.C167C 0.15 TCGA-39-5034-01 1 75038282 75038282 C A C1orf173 Missense_Mutation p.A1038S 0.57 tolerated(0.26) benign(0.029) TCGA-39-5034-01 1 75214507 75214507 G T TYW3 Splice_Site p.X142_splice 0.62 TCGA-39-5034-01 1 75672188 75672188 A - SLC44A5 3'UTR 0.23 TCGA-39-5034-01 1 7737787 7737787 T A CAMTA1 Missense_Mutation p.L970M 0.14 deleterious(0.01) probably_damaging(0.972) TCGA-39-5034-01 1 86591871 86591871 G T COL24A1 Missense_Mutation p.L50I 0.36 deleterious(0.02) benign(0.083) TCGA-39-5034-01 20 20149969 20149969 A T C20orf26 Missense_Mutation p.K417M 0.45 deleterious(0.01) probably_damaging(0.916) TCGA-39-5034-01 20 2622024 2622024 C T TMC2 3'UTR 0.67 TCGA-39-5034-01 20 30309561 30309561 C A BCL2L1 Missense_Mutation p.S154I 0.31 tolerated(0.07) probably_damaging(1) TCGA-39-5034-01 20 31368147 31368147 G T DNMT3B Missense_Mutation p.R6S 0.13 tolerated_low_confidence(0.44) benign(0.005) TCGA-39-5034-01 20 35672524 35672524 G A RBL1 Nonsense_Mutation p.Q579* 0.27 TCGA-39-5034-01 20 41306786 41306786 G T PTPRT Silent p.P291P 0.21 TCGA-39-5034-01 20 42161417 42161417 C A L3MBTL1 Missense_Mutation p.P408H 0.21 tolerated(0.15) benign(0.004) TCGA-39-5034-01 20 42743448 42743448 G T JPH2 Missense_Mutation p.H693Q 0.33 deleterious(0) probably_damaging(0.987) TCGA-39-5034-01 20 52198292 52198292 C A ZNF217 Silent p.A358A 0.22 TCGA-39-5034-01 20 54970729 54970729 C T CSTF1 Nonsense_Mutation p.Q41* 0.21 TCGA-39-5034-01 20 56139583 56139583 G T PCK1 Missense_Mutation p.S411I 0.28 deleterious(0.03) benign(0.072) TCGA-39-5034-01 20 58349522 58349522 C A PHACTR3 Missense_Mutation p.A384E 0.27 tolerated(1) benign(0.01) TCGA-39-5034-01 20 60768584 60768584 A G MTG2 Silent p.P36P 0.35 TCGA-39-5034-01 21 10910352 10910352 G A TPTE Silent p.D468D 0.15 TCGA-39-5034-01 21 10920143 10920143 C A TPTE Nonsense_Mutation p.E371* 0.16 TCGA-39-5034-01 21 11038741 11038741 G T BAGE2 RNA 0.14 TCGA-39-5034-01 21 34074304 34074304 A G SYNJ1 Missense_Mutation p.Y99H 0.20 deleterious(0.02) probably_damaging(1) TCGA-39-5034-01 21 37653787 37653787 A G DOPEY2 Missense_Mutation p.Q2013R 0.52 deleterious(0) probably_damaging(0.911) TCGA-39-5034-01 21 41032873 41032873 C T B3GALT5 Silent p.Y129Y 0.45 TCGA-39-5034-01 21 41710301 41710301 G T DSCAM Missense_Mutation p.P504T 0.56 tolerated(0.42) benign(0.256) TCGA-39-5034-01 21 44317086 44317086 C T NDUFV3 Missense_Mutation p.S33F 0.22 tolerated(0.41) benign(0.086) TCGA-39-5034-01 22 21384054 21384054 G T SLC7A4 Silent p.L523L 0.26 TCGA-39-5034-01 22 24584472 24584472 C T SUSD2 3'UTR 0.36 TCGA-39-5034-01 22 26239734 26239734 C A MYO18B Missense_Mutation p.L1081I 0.27 deleterious(0.02) probably_damaging(0.944) TCGA-39-5034-01 22 26747119 26747119 G T SEZ6L Missense_Mutation p.G837C 0.33 deleterious(0) probably_damaging(0.997) TCGA-39-5034-01 22 32463954 32463954 G T SLC5A1 Missense_Mutation p.A105S 0.31 tolerated(0.13) possibly_damaging(0.856) TCGA-39-5034-01 22 35463135 35463135 G T ISX Missense_Mutation p.G19W 0.29 deleterious(0) probably_damaging(0.988) TCGA-39-5034-01 22 37334381 37334381 C A CSF2RB Missense_Mutation p.P844H 0.39 tolerated(0.57) benign(0.276) TCGA-39-5034-01 22 37637689 37637689 G A RAC2 Silent p.G15G 0.37 TCGA-39-5034-01 22 38642025 38642025 C A TMEM184B Missense_Mutation p.A92S 0.36 tolerated(0.21) possibly_damaging(0.568) TCGA-39-5034-01 22 40055808 40055808 T A CACNA1I Missense_Mutation p.V852E 0.41 deleterious(0) possibly_damaging(0.727) TCGA-39-5034-01 22 40366977 40366977 C T GRAP2 Silent p.S294S 0.40 TCGA-39-5034-01 22 41077879 41077879 G C MCHR1 Missense_Mutation p.V406L 0.41 tolerated(0.18) benign(0.001) TCGA-39-5034-01 22 41980353 41980353 C T PMM1 Silent p.E102E 0.32 TCGA-39-5034-01 22 42422932 42422932 C A WBP2NL Missense_Mutation p.A226D 0.41 deleterious(0.02) benign(0.185) TCGA-39-5034-01 2 101182964 101182964 G T PDCL3 Splice_Site p.X3_splice 0.22 TCGA-39-5034-01 2 101186157 101186157 G T PDCL3 Missense_Mutation p.W114C 0.14 deleterious(0.01) possibly_damaging(0.853) TCGA-39-5034-01 2 103040758 103040758 T A IL18RAP Missense_Mutation p.C155S 0.37 deleterious(0) probably_damaging(0.965) TCGA-39-5034-01 2 109400076 109400076 G T RANBP2 Nonsense_Mutation p.G3132* 0.19 TCGA-39-5034-01 2 122122669 122122669 C T CLASP1 Splice_Site p.X1359_splice 0.11 TCGA-39-5034-01 2 125671794 125671794 G T CNTNAP5 Missense_Mutation p.D1284Y 0.17 tolerated(0.22) probably_damaging(0.928) TCGA-39-5034-01 2 128354099 128354099 C T MYO7B Silent p.S769S 0.13 TCGA-39-5034-01 2 130725884 130725884 C A RAB6C-AS1 RNA 0.27 TCGA-39-5034-01 2 130832623 130832623 C A POTEF Missense_Mutation p.A808S 0.18 deleterious_low_confidence(0.02) benign(0.248) TCGA-39-5034-01 2 131521126 131521126 T A AMER3 Missense_Mutation p.L494Q 0.40 deleterious(0) probably_damaging(1) TCGA-39-5034-01 2 138414400 138414400 C A THSD7B Missense_Mutation p.S1383R 0.30 deleterious(0.03) unknown(0) TCGA-39-5034-01 2 141079600 141079600 C A LRP1B Missense_Mutation p.G4191V 0.37 probably_damaging(0.953) TCGA-39-5034-01 2 141359142 141359142 G A LRP1B Missense_Mutation p.T2289I 0.23 possibly_damaging(0.507) TCGA-39-5034-01 2 141680684 141680684 C A LRP1B Nonsense_Mutation p.E1057* 0.34 TCGA-39-5034-01 2 152544873 152544873 T - NEB Frame_Shift_Del p.K783Sfs*21 0.25 TCGA-39-5034-01 2 155252570 155252570 G T GALNT13 Missense_Mutation p.K408N 0.46 deleterious(0.03) benign(0.129) TCGA-39-5034-01 2 158114774 158114774 G C GALNT5 Missense_Mutation p.Q60H 0.21 tolerated(0.07) possibly_damaging(0.625) TCGA-39-5034-01 2 163302667 163302667 G T KCNH7 Missense_Mutation p.T472K 0.31 deleterious(0) probably_damaging(1) TCGA-39-5034-01 2 168106960 168106960 G T XIRP2 Nonsense_Mutation p.E3020* 0.23 TCGA-39-5034-01 2 170063353 170063353 C T LRP2 Missense_Mutation p.V2293I 0.39 probably_damaging(0.927) TCGA-39-5034-01 2 172965159 172965159 C G DLX2 3'UTR 0.20 TCGA-39-5034-01 2 178540248 178540248 T G PDE11A Splice_Site p.X808_splice 0.18 TCGA-39-5034-01 2 178981091 178981091 G A RBM45 Missense_Mutation p.D135N 0.43 deleterious(0.01) probably_damaging(0.977) TCGA-39-5034-01 2 179640287 179640287 C T TTN Missense_Mutation p.V2102M 0.30 TCGA-39-5034-01 2 183960281 183960281 A T DUSP19 Silent p.A183A 0.41 TCGA-39-5034-01 2 186671136 186671136 G A FSIP2 Silent p.S5790S 0.35 TCGA-39-5034-01 2 187627415 187627415 G T FAM171B Missense_Mutation p.R782S 0.38 tolerated(0.16) benign(0.055) TCGA-39-5034-01 2 189866283 189866283 C T COL3A1 Missense_Mutation p.L787F 0.17 unknown(0) TCGA-39-5034-01 2 189904130 189904130 C G COL5A2 Missense_Mutation p.D1265H 0.43 unknown(0) TCGA-39-5034-01 2 202254036 202254036 C A TRAK2 Nonsense_Mutation p.E462* 0.26 TCGA-39-5034-01 2 212248345 212248345 C A ERBB4 Missense_Mutation p.V1308L 0.24 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-39-5034-01 2 212248346 212248346 C G ERBB4 Silent p.V1307V 0.24 TCGA-39-5034-01 2 220285660 220285660 C A DES Missense_Mutation p.D336E 0.23 tolerated(0.77) benign(0.13) TCGA-39-5034-01 2 222428802 222428802 C A EPHA4 Missense_Mutation p.D158Y 0.42 deleterious(0) probably_damaging(0.998) TCGA-39-5034-01 2 225339002 225339002 C A CUL3 Missense_Mutation p.R756L 0.09 deleterious(0) probably_damaging(1) TCGA-39-5034-01 2 225796386 225796386 C A DOCK10 Splice_Site p.X42_splice 0.30 TCGA-39-5034-01 2 228882550 228882550 G A SPHKAP Missense_Mutation p.T1007M 0.18 deleterious(0) probably_damaging(0.987) TCGA-39-5034-01 2 233656147 233656147 A T GIGYF2 Nonsense_Mutation p.R446* 0.16 TCGA-39-5034-01 2 233681609 233681609 T C GIGYF2 Missense_Mutation p.M767T 0.26 unknown(0) TCGA-39-5034-01 2 234854674 234854674 G C TRPM8 Missense_Mutation p.D292H 0.16 tolerated(0.16) possibly_damaging(0.479) TCGA-39-5034-01 2 242144371 242144371 G A ANO7 Splice_Site p.X381_splice 0.14 TCGA-39-5034-01 2 242148994 242148994 C A ANO7 Missense_Mutation p.P489T 0.30 deleterious(0.02) possibly_damaging(0.539) TCGA-39-5034-01 2 242265453 242265453 G T SEPT2 Nonsense_Mutation p.G19* 0.26 TCGA-39-5034-01 2 31483592 31483592 T A EHD3 Nonsense_Mutation p.L240* 0.61 TCGA-39-5034-01 2 32379632 32379632 G A SPAST 3'UTR 0.09 TCGA-39-5034-01 2 32475139 32475139 G T NLRC4 Missense_Mutation p.F598L 0.55 deleterious(0) probably_damaging(0.997) TCGA-39-5034-01 2 32822821 32822821 C T BIRC6 Missense_Mutation p.T4539M 0.38 probably_damaging(0.997) TCGA-39-5034-01 2 33745061 33745061 A G RASGRP3 Silent p.L72L 0.67 TCGA-39-5034-01 2 42991202 42991202 T A OXER1 Missense_Mutation p.M40L 0.13 deleterious_low_confidence(0.02) benign(0.141) TCGA-39-5034-01 2 42991203 42991203 G T OXER1 Silent p.P39P 0.14 TCGA-39-5034-01 2 44105135 44105135 G T ABCG8 3'UTR 0.52 TCGA-39-5034-01 2 71044073 71044073 G T CLEC4F Missense_Mutation p.A147D 0.34 deleterious(0.01) benign(0.223) TCGA-39-5034-01 2 74001004 74001004 T G DUSP11 Missense_Mutation p.H166P 0.25 deleterious(0.01) probably_damaging(0.994) TCGA-39-5034-01 2 74750617 74750617 C - DQX1 Frame_Shift_Del p.L288Ffs*74 0.23 TCGA-39-5034-01 2 85890861 85890861 A T SFTPB Missense_Mutation p.L273Q 0.67 tolerated(0.08) probably_damaging(0.977) TCGA-39-5034-01 2 86831949 86831949 T C RNF103 Missense_Mutation p.T359A 0.19 tolerated(0.36) probably_damaging(0.996) TCGA-39-5034-01 2 89309595 89309595 C T IGKV1-9 Missense_Mutation p.G79R 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.896) TCGA-39-5034-01 2 90044171 90044171 C A IGKV2D-24 Nonsense_Mutation p.S31* 0.47 TCGA-39-5034-01 2 90229352 90229352 T A IGKV1D-42 Missense_Mutation p.Y58N 0.18 deleterious(0.01) probably_damaging(0.981) TCGA-39-5034-01 2 90260142 90260142 C T IGKV1D-8 Missense_Mutation p.S82L 0.36 deleterious(0.01) benign(0.312) TCGA-39-5034-01 2 91843511 91843511 G - AC027612.6 RNA 0.11 TCGA-39-5034-01 2 96801143 96801143 G T ASTL Missense_Mutation p.L64M 0.45 deleterious(0.04) benign(0.014) TCGA-39-5034-01 3 107524226 107524226 G T BBX Missense_Mutation p.R916S 0.55 deleterious(0) probably_damaging(0.989) TCGA-39-5034-01 3 122003582 122003582 C A CASR Silent p.P937P 0.53 TCGA-39-5034-01 3 123456371 123456371 G A MYLK Missense_Mutation p.P203L 0.62 tolerated(0.11) benign(0.018) TCGA-39-5034-01 3 124449248 124449248 C A UMPS 5'UTR 0.55 TCGA-39-5034-01 3 170727802 170727802 C A SLC2A2 Missense_Mutation p.L147F 0.75 tolerated(0.23) benign(0.03) TCGA-39-5034-01 3 172534549 172534549 C T ECT2 Silent p.H859H 0.65 TCGA-39-5034-01 3 178525209 178525209 G T KCNMB2 Missense_Mutation p.W4C 0.59 deleterious(0.02) probably_damaging(0.999) TCGA-39-5034-01 3 194790790 194790790 C T XXYLT1 Missense_Mutation p.G279D 0.71 tolerated(0.76) benign(0.001) TCGA-39-5034-01 3 2908469 2908469 C A CNTN4 Missense_Mutation p.P163H 0.47 deleterious(0) probably_damaging(0.991) TCGA-39-5034-01 3 3030072 3030072 A T CNTN4 Missense_Mutation p.T468S 0.41 tolerated(0.57) possibly_damaging(0.823) TCGA-39-5034-01 3 42251258 42251258 G T TRAK1 Splice_Site p.X582_splice 0.56 TCGA-39-5034-01 3 43618294 43618294 C A ANO10 Missense_Mutation p.G351V 0.51 tolerated(0.22) benign(0.063) TCGA-39-5034-01 3 44488268 44488268 G A ZNF445 Silent p.L965L 0.47 TCGA-39-5034-01 3 44763516 44763516 G T ZNF502 Missense_Mutation p.G403W 0.15 deleterious(0) probably_damaging(1) TCGA-39-5034-01 3 49163526 49163526 G A LAMB2 Missense_Mutation p.R740C 0.08 deleterious(0.01) possibly_damaging(0.844) TCGA-39-5034-01 3 52326543 52326543 G T GLYCTK Missense_Mutation p.A325S 0.32 tolerated(0.66) benign(0.01) TCGA-39-5034-01 3 52535701 52535701 G T STAB1 Missense_Mutation p.R88I 0.50 tolerated(0.12) benign(0.039) TCGA-39-5034-01 3 52812421 52812421 C A ITIH1 Missense_Mutation p.H68Q 0.36 deleterious(0) probably_damaging(0.991) TCGA-39-5034-01 3 58849575 58849575 C A C3orf67 Silent p.L309L 0.29 TCGA-39-5034-01 3 68934405 68934405 C G FAM19A4 5'UTR 0.23 TCGA-39-5034-01 3 9032337 9032337 C A SRGAP3 Silent p.A915A 0.43 TCGA-39-5034-01 3 93803039 93803039 T C NSUN3 Silent p.L71L 0.58 TCGA-39-5034-01 3 95374443 95374443 C T MTHFD2P1 RNA 0.57 TCGA-39-5034-01 4 102117163 102117163 C A PPP3CA Nonsense_Mutation p.E57* 0.49 TCGA-39-5034-01 4 108831741 108831741 A C SGMS2 3'UTR 0.13 TCGA-39-5034-01 4 111539320 111539320 G T PITX2 Missense_Mutation p.N312K 0.49 deleterious(0.05) benign(0.318) TCGA-39-5034-01 4 126315114 126315114 G C FAT4 Intron 0.41 TCGA-39-5034-01 4 134071637 134071637 C A PCDH10 Missense_Mutation p.D114E 0.60 deleterious(0) probably_damaging(0.957) TCGA-39-5034-01 4 13578612 13578612 G T BOD1L1 Missense_Mutation p.S2963Y 0.14 possibly_damaging(0.643) TCGA-39-5034-01 4 13628977 13628977 C A BOD1L1 Missense_Mutation p.D79Y 0.47 probably_damaging(0.947) TCGA-39-5034-01 4 169342916 169342916 C A DDX60L Missense_Mutation p.A797S 0.49 deleterious(0.01) benign(0.022) TCGA-39-5034-01 4 175412984 175412984 C A HPGD 3'UTR 0.45 TCGA-39-5034-01 4 176733415 176733415 T A GPM6A Intron 0.50 TCGA-39-5034-01 4 183245120 183245120 C A TENM3 5'UTR 0.67 TCGA-39-5034-01 4 20731636 20731636 G A KCNIP4 3'UTR 0.14 TCGA-39-5034-01 4 2272499 2272499 A T ZFYVE28 Missense_Mutation p.Y873N 0.17 deleterious(0) probably_damaging(1) TCGA-39-5034-01 4 2306064 2306064 G T ZFYVE28 Missense_Mutation p.A668D 0.33 tolerated_low_confidence(0.43) benign(0.028) TCGA-39-5034-01 4 39301702 39301702 T A RFC1 Missense_Mutation p.D917V 0.34 tolerated(0.37) possibly_damaging(0.472) TCGA-39-5034-01 4 41749515 41749515 C T PHOX2B Missense_Mutation p.E94K 0.39 deleterious(0.01) probably_damaging(0.979) TCGA-39-5034-01 4 4199143 4199143 G T OTOP1 Missense_Mutation p.P473H 0.28 tolerated(0.17) possibly_damaging(0.538) TCGA-39-5034-01 4 44450254 44450254 C G KCTD8 Missense_Mutation p.R96P 0.12 deleterious(0) probably_damaging(0.991) TCGA-39-5034-01 4 47850218 47850218 C A NFXL1 Missense_Mutation p.V900L 0.17 tolerated(0.47) benign(0.001) TCGA-39-5034-01 4 60032 60032 C A ZNF595 Missense_Mutation p.A71E 0.12 deleterious_low_confidence(0.03) possibly_damaging(0.533) TCGA-39-5034-01 4 68928540 68928540 G T TMPRSS11F Intron 0.59 TCGA-39-5034-01 4 76452343 76452343 C T THAP6 Silent p.I196I 0.68 TCGA-39-5034-01 4 76489694 76489694 C T C4orf26 Missense_Mutation p.S161F 0.43 tolerated_low_confidence(0.12) possibly_damaging(0.683) TCGA-39-5034-01 4 77700040 77700040 A T SHROOM3 Missense_Mutation p.R1901W 0.57 deleterious(0) probably_damaging(1) TCGA-39-5034-01 4 91234192 91234192 C T CCSER1 Silent p.N501N 0.53 TCGA-39-5034-01 4 94006244 94006244 C A GRID2 Missense_Mutation p.P115T 0.55 tolerated(0.11) probably_damaging(1) TCGA-39-5034-01 4 96761713 96761713 G A PDHA2 Missense_Mutation p.G138R 0.52 deleterious(0) probably_damaging(1) TCGA-39-5034-01 5 10748381 10748381 T A DAP Nonsense_Mutation p.K20* 0.22 TCGA-39-5034-01 5 109117282 109117282 C T MAN2A1 Silent p.I520I 0.43 TCGA-39-5034-01 5 109117294 109117294 T - MAN2A1 Frame_Shift_Del p.L525* 0.32 TCGA-39-5034-01 5 110446977 110446977 G C WDR36 Missense_Mutation p.M628I 0.20 tolerated(0.12) benign(0.185) TCGA-39-5034-01 5 11236857 11236857 G T CTNND2 Missense_Mutation p.N569K 0.16 deleterious(0) probably_damaging(0.985) TCGA-39-5034-01 5 121487970 121487970 G T ZNF474 Silent p.R95R 0.26 TCGA-39-5034-01 5 1216723 1216723 C A SLC6A19 Missense_Mutation p.T313K 0.11 deleterious(0) probably_damaging(0.996) TCGA-39-5034-01 5 127624872 127624872 C G FBN2 Missense_Mutation p.R2195P 0.43 deleterious(0) benign(0.328) TCGA-39-5034-01 5 127636540 127636540 T G FBN2 Silent p.P2045P 0.34 TCGA-39-5034-01 5 130797535 130797535 T C RAPGEF6 Silent p.Q909Q 0.29 TCGA-39-5034-01 5 131013319 131013319 T C FNIP1 Intron 0.25 TCGA-39-5034-01 5 134679204 134679204 C A C5orf66 3'UTR 0.27 TCGA-39-5034-01 5 13700969 13700969 C A DNAH5 Silent p.R4501R 0.26 TCGA-39-5034-01 5 13922242 13922242 C T DNAH5 Missense_Mutation p.G212S 0.18 possibly_damaging(0.855) TCGA-39-5034-01 5 140166035 140166035 C T PCDHA1 Silent p.L54L 0.40 TCGA-39-5034-01 5 140208410 140208410 C T PCDHA6 Missense_Mutation p.S245F 0.43 tolerated_low_confidence(0.07) benign(0.025) TCGA-39-5034-01 5 140241215 140241215 G T AC005609.1 3'UTR 0.23 TCGA-39-5034-01 5 140249127 140249127 C A PCDHA11 Missense_Mutation p.Q147K 0.38 tolerated_low_confidence(0.31) benign(0.355) TCGA-39-5034-01 5 140480369 140480369 G T PCDHB3 Missense_Mutation p.A46S 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.564) TCGA-39-5034-01 5 140517441 140517441 C A PCDHB5 3'UTR 0.51 TCGA-39-5034-01 5 140537434 140537434 G T PCDHB17 3'UTR 0.30 TCGA-39-5034-01 5 140574035 140574035 A T PCDHB10 Missense_Mutation p.K637M 0.62 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-39-5034-01 5 140590638 140590638 C A PCDHB12 Missense_Mutation p.A720D 0.47 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-39-5034-01 5 140711192 140711192 T C PCDHGA1 Missense_Mutation p.M314T 0.38 deleterious_low_confidence(0.02) benign(0.006) TCGA-39-5034-01 5 140718633 140718633 G A PCDHGA2 Missense_Mutation p.R32H 0.15 tolerated_low_confidence(0.29) benign(0.032) TCGA-39-5034-01 5 140736582 140736582 C G PCDHGA4 Silent p.S605S 0.45 TCGA-39-5034-01 5 140740455 140740455 G T PCDHGB2 Silent p.L251L 0.15 TCGA-39-5034-01 5 140768848 140768848 G T PCDHGB4 Missense_Mutation p.G466V 0.19 deleterious(0) probably_damaging(0.997) TCGA-39-5034-01 5 140783509 140783509 G T PCDHGA9 Missense_Mutation p.W330C 0.18 deleterious_low_confidence(0) benign(0.335) TCGA-39-5034-01 5 149631572 149631572 C A CAMK2A Missense_Mutation p.G191W 0.41 deleterious_low_confidence(0) possibly_damaging(0.862) TCGA-39-5034-01 5 154395013 154395013 G T KIF4B Missense_Mutation p.A532S 0.29 tolerated(0.09) possibly_damaging(0.459) TCGA-39-5034-01 5 156900014 156900014 G T NIPAL4 3'UTR 0.29 TCGA-39-5034-01 5 160047863 160047863 G T ATP10B Nonsense_Mutation p.S636* 0.43 TCGA-39-5034-01 5 160061484 160061484 T C ATP10B Missense_Mutation p.I420V 0.43 deleterious(0.03) benign(0.071) TCGA-39-5034-01 5 16067760 16067760 A T MARCH11 Silent p.T343T 0.29 TCGA-39-5034-01 5 161119103 161119103 C - GABRA6 Frame_Shift_Del p.N329Ifs*19 0.33 TCGA-39-5034-01 5 161277832 161277832 G T GABRA1 Missense_Mutation p.G6C 0.41 deleterious_low_confidence(0.02) benign(0.071) TCGA-39-5034-01 5 161580293 161580293 G T GABRG2 Missense_Mutation p.M489I 0.35 tolerated(0.69) benign(0.003) TCGA-39-5034-01 5 169506052 169506052 C G DOCK2 Missense_Mutation p.L1690V 0.35 tolerated(0.45) benign(0.04) TCGA-39-5034-01 5 169535487 169535487 T C FOXI1 Missense_Mutation p.W337R 0.24 tolerated(0.09) probably_damaging(0.999) TCGA-39-5034-01 5 169535488 169535488 G T FOXI1 Missense_Mutation p.W337L 0.24 tolerated(0.21) probably_damaging(0.997) TCGA-39-5034-01 5 173531230 173531230 G T NSG2 Splice_Site p.X72_splice 0.51 TCGA-39-5034-01 5 175995734 175995734 T A CDHR2 Nonsense_Mutation p.Y60* 0.15 TCGA-39-5034-01 5 176025143 176025143 C A GPRIN1 Nonsense_Mutation p.G565* 0.36 TCGA-39-5034-01 5 176468795 176468795 A G ZNF346 Missense_Mutation p.N99S 0.14 tolerated(0.15) possibly_damaging(0.614) TCGA-39-5034-01 5 176885394 176885394 C A DBN1 Missense_Mutation p.G483C 0.46 deleterious(0) probably_damaging(0.94) TCGA-39-5034-01 5 176942950 176942950 A G DDX41 Silent p.Y138Y 0.19 TCGA-39-5034-01 5 179498580 179498580 C T RNF130 Silent p.V41V 0.47 TCGA-39-5034-01 5 180486554 180486554 G T BTNL9 Missense_Mutation p.A434S 0.44 tolerated(0.54) benign(0.171) TCGA-39-5034-01 5 180582664 180582664 C A OR2V2 Missense_Mutation p.T241N 0.35 deleterious(0) probably_damaging(0.984) TCGA-39-5034-01 5 180582665 180582665 C A OR2V2 Silent p.T241T 0.35 TCGA-39-5034-01 5 24487766 24487766 C G CDH10 3'UTR 0.34 TCGA-39-5034-01 5 254607 254607 G C SDHA Missense_Mutation p.V632L 0.63 tolerated_low_confidence(0.4) benign(0.001) TCGA-39-5034-01 5 33467855 33467855 A G TARS 3'UTR 0.21 TCGA-39-5034-01 5 35691144 35691144 G A SPEF2 Missense_Mutation p.M510I 0.53 deleterious(0) probably_damaging(0.937) TCGA-39-5034-01 5 35921086 35921086 C T CAPSL Missense_Mutation p.R46K 0.13 tolerated(0.06) benign(0.165) TCGA-39-5034-01 5 36051976 36051976 C A UGT3A2 Missense_Mutation p.G103C 0.11 deleterious(0.01) probably_damaging(0.954) TCGA-39-5034-01 5 36679800 36679800 G T SLC1A3 Missense_Mutation p.G311V 0.21 deleterious(0.01) probably_damaging(1) TCGA-39-5034-01 5 41149437 41149437 T A C6 Missense_Mutation p.L843F 0.46 deleterious(0.01) probably_damaging(0.953) TCGA-39-5034-01 5 41161941 41161941 C A C6 Nonsense_Mutation p.E438* 0.54 TCGA-39-5034-01 5 41381998 41381998 C A PLCXD3 Missense_Mutation p.V248L 0.19 deleterious(0.01) possibly_damaging(0.596) TCGA-39-5034-01 5 43245781 43245781 C A NIM1K 5'UTR 0.20 TCGA-39-5034-01 5 50685702 50685702 G C ISL1 Missense_Mutation p.C234S 0.17 deleterious(0) probably_damaging(0.981) TCGA-39-5034-01 5 5303425 5303425 G C ADAMTS16 Missense_Mutation p.G945A 0.54 tolerated(0.05) benign(0.098) TCGA-39-5034-01 5 65288575 65288575 G T ERBB2IP Missense_Mutation p.R10L 0.43 deleterious(0) probably_damaging(0.998) TCGA-39-5034-01 5 73136385 73136385 G T ARHGEF28 Silent p.L409L 0.44 TCGA-39-5034-01 5 74695170 74695170 T C COL4A3BP Missense_Mutation p.S513G 0.20 tolerated(0.24) benign(0.121) TCGA-39-5034-01 5 75427912 75427912 A T SV2C Nonsense_Mutation p.K113* 0.41 TCGA-39-5034-01 5 75505701 75505701 T A SV2C Missense_Mutation p.I301N 0.43 deleterious(0) probably_damaging(0.917) TCGA-39-5034-01 5 75858253 75858253 C T IQGAP2 Missense_Mutation p.P60L 0.17 deleterious(0) probably_damaging(1) TCGA-39-5034-01 5 7709369 7709369 C A ADCY2 Missense_Mutation p.L483I 0.13 tolerated(0.24) benign(0.006) TCGA-39-5034-01 5 82808062 82808062 G C VCAN Missense_Mutation p.G297R 0.15 deleterious(0) probably_damaging(0.999) TCGA-39-5034-01 5 82817556 82817556 G T VCAN Missense_Mutation p.G1144V 0.22 deleterious(0.01) possibly_damaging(0.735) TCGA-39-5034-01 5 82835376 82835376 C A VCAN Missense_Mutation p.P2185Q 0.19 deleterious(0.04) possibly_damaging(0.51) TCGA-39-5034-01 5 96440939 96440939 G A LIX1 Silent p.H146H 0.19 TCGA-39-5034-01 6 108068095 108068095 T A SCML4 Splice_Site p.X96_splice 0.56 TCGA-39-5034-01 6 117114298 117114300 TAG AA GPRC6A Frame_Shift_Del p.L596Ffs*3 0.25 TCGA-39-5034-01 6 121768604 121768604 C A GJA1 Missense_Mutation p.T204K 0.45 deleterious(0) probably_damaging(1) TCGA-39-5034-01 6 126199413 126199413 G T NCOA7 Missense_Mutation p.G119V 0.38 deleterious(0.01) probably_damaging(0.961) TCGA-39-5034-01 6 129649518 129649518 A T LAMA2 Silent p.G1424G 0.46 TCGA-39-5034-01 6 133055453 133055453 G T VNN3 Missense_Mutation p.P95T 0.44 deleterious(0) possibly_damaging(0.644) TCGA-39-5034-01 6 136599813 136599813 C G BCLAF1 Missense_Mutation p.R69P 0.17 deleterious_low_confidence(0) unknown(0) TCGA-39-5034-01 6 154542435 154542435 G A IPCEF1 Silent p.I116I 0.26 TCGA-39-5034-01 6 154732242 154732242 T A CNKSR3 Missense_Mutation p.S369C 0.34 deleterious(0.02) possibly_damaging(0.494) TCGA-39-5034-01 6 155776910 155776910 C A NOX3 Nonsense_Mutation p.E9* 0.40 TCGA-39-5034-01 6 159263019 159263019 T A OSTCP1 RNA 0.58 TCGA-39-5034-01 6 160543366 160543366 C T SLC22A1 Silent p.S133S 0.42 TCGA-39-5034-01 6 161026109 161026109 G A LPA Missense_Mutation p.H972Y 0.51 deleterious(0) probably_damaging(0.995) TCGA-39-5034-01 6 26027423 26027423 G A HIST1H4B Nonsense_Mutation p.R20* 0.28 TCGA-39-5034-01 6 26032019 26032019 C G HIST1H3B Silent p.V90V 0.14 TCGA-39-5034-01 6 26200048 26200048 T G HIST1H2BF Missense_Mutation p.S88A 0.25 deleterious_low_confidence(0.01) benign(0.428) TCGA-39-5034-01 6 26252107 26252107 G A HIST1H2BH Missense_Mutation p.E77K 0.42 deleterious_low_confidence(0.04) possibly_damaging(0.849) TCGA-39-5034-01 6 30128367 30128367 G C TRIM10 Missense_Mutation p.T90R 0.38 tolerated(0.53) benign(0.002) TCGA-39-5034-01 6 32017121 32017121 C T TNXB 5'Flank 0.22 TCGA-39-5034-01 6 37298819 37298819 G A TBC1D22B Splice_Site p.X464_splice 0.22 TCGA-39-5034-01 6 44116087 44116087 C T TMEM63B Silent p.A362A 0.08 TCGA-39-5034-01 6 50683213 50683213 C A TFAP2D Missense_Mutation p.R142S 0.22 tolerated(0.06) possibly_damaging(0.726) TCGA-39-5034-01 6 50696691 50696691 C T TFAP2D Missense_Mutation p.P241S 0.26 deleterious(0) probably_damaging(0.966) TCGA-39-5034-01 6 52103537 52103537 C T IL17F Nonsense_Mutation p.W82* 0.31 TCGA-39-5034-01 6 54219319 54219319 C T TINAG Nonsense_Mutation p.Q379* 0.14 TCGA-39-5034-01 6 54804611 54804611 G T FAM83B Missense_Mutation p.C281F 0.31 tolerated(0.1) possibly_damaging(0.516) TCGA-39-5034-01 6 54806025 54806025 C A FAM83B Missense_Mutation p.N752K 0.18 tolerated(0.15) benign(0.075) TCGA-39-5034-01 6 55300561 55300561 C T HMGCLL1 Missense_Mutation p.G338S 0.31 deleterious(0) probably_damaging(1) TCGA-39-5034-01 6 55924958 55924958 G T COL21A1 Silent p.S822S 0.17 TCGA-39-5034-01 6 6174934 6174934 G T F13A1 Missense_Mutation p.N542K 0.19 deleterious(0) possibly_damaging(0.765) TCGA-39-5034-01 6 656932 656932 C A HUS1B Missense_Mutation p.A5S 0.38 tolerated(0.06) probably_damaging(0.998) TCGA-39-5034-01 6 74073397 74073397 C A KHDC3L Silent p.T156T 0.34 TCGA-39-5034-01 6 76728451 76728451 C - IMPG1 Frame_Shift_Del p.G264Efs*23 0.38 TCGA-39-5034-01 6 96984250 96984250 G A UFL1 Silent p.R262R 0.51 TCGA-39-5034-01 7 100198390 100198390 G C FBXO24 Missense_Mutation p.E575D 0.27 tolerated_low_confidence(0.2) benign(0.217) TCGA-39-5034-01 7 113558807 113558807 C A PPP1R3A Missense_Mutation p.C82F 0.59 deleterious(0.01) benign(0.396) TCGA-39-5034-01 7 11464326 11464326 A G THSD7A Missense_Mutation p.V1127A 0.23 deleterious(0) probably_damaging(0.955) TCGA-39-5034-01 7 120767221 120767221 T G CPED1 Missense_Mutation p.N404K 0.48 tolerated(0.64) benign(0) TCGA-39-5034-01 7 121682764 121682764 C A PTPRZ1 Silent p.I1968I 0.33 TCGA-39-5034-01 7 121682765 121682765 C A PTPRZ1 Missense_Mutation p.R1969S 0.32 deleterious(0.02) probably_damaging(0.987) TCGA-39-5034-01 7 121731818 121731818 C A AASS Missense_Mutation p.W652L 0.53 deleterious(0) probably_damaging(1) TCGA-39-5034-01 7 128478704 128478704 C A FLNC Silent p.R420R 0.57 TCGA-39-5034-01 7 128852151 128852151 C A SMO Silent p.P741P 0.59 TCGA-39-5034-01 7 141740618 141740618 C G MGAM Missense_Mutation p.Q824E 0.46 deleterious(0) possibly_damaging(0.749) TCGA-39-5034-01 7 143701535 143701535 G - OR6B1 Frame_Shift_Del p.A150Pfs*45 0.48 TCGA-39-5034-01 7 149152995 149152995 G A ZNF777 Missense_Mutation p.P40L 0.58 deleterious_low_confidence(0) benign(0.319) TCGA-39-5034-01 7 150839342 150839342 T G AGAP3 Splice_Site p.X684_splice 0.54 TCGA-39-5034-01 7 151970812 151970812 G T KMT2C Missense_Mutation p.H330Q 0.07 probably_damaging(0.999) TCGA-39-5034-01 7 158542363 158542363 C A ESYT2 Missense_Mutation p.G539W 0.46 deleterious(0) probably_damaging(0.999) TCGA-39-5034-01 7 17915109 17915109 C A SNX13 Nonsense_Mutation p.E220* 0.18 TCGA-39-5034-01 7 19748392 19748392 G A TWISTNB Missense_Mutation p.S83F 0.34 deleterious(0.02) probably_damaging(0.992) TCGA-39-5034-01 7 20698299 20698299 G T ABCB5 Missense_Mutation p.K569N 0.25 deleterious(0.02) probably_damaging(0.996) TCGA-39-5034-01 7 25264692 25264692 G T NPVF 3'UTR 0.46 TCGA-39-5034-01 7 2578203 2578203 C A BRAT1 Nonsense_Mutation p.E656* 0.48 TCGA-39-5034-01 7 27186829 27186829 C G HOXA6 Intron 0.21 TCGA-39-5034-01 7 2946133 2946133 C A CARD11 3'UTR 0.33 TCGA-39-5034-01 7 30087565 30087565 A G PLEKHA8 Missense_Mutation p.N144S 0.15 tolerated(0.62) benign(0) TCGA-39-5034-01 7 30671101 30671101 G A GARS Missense_Mutation p.C616Y 0.41 deleterious(0) probably_damaging(0.991) TCGA-39-5034-01 7 30876341 30876341 G T FAM188B Missense_Mutation p.L400F 0.17 tolerated(0.07) benign(0.027) TCGA-39-5034-01 7 32110039 32110039 G T PDE1C Intron 0.16 TCGA-39-5034-01 7 33015994 33015994 T G FKBP9 Missense_Mutation p.Y196D 0.42 deleterious(0.02) probably_damaging(0.99) TCGA-39-5034-01 7 37955903 37955903 G A SFRP4 Silent p.A79A 0.26 TCGA-39-5034-01 7 39612150 39612150 A T YAE1D1 Missense_Mutation p.S176C 0.48 deleterious(0.03) possibly_damaging(0.497) TCGA-39-5034-01 7 40900000 40900000 G T SUGCT Missense_Mutation p.K446N 0.24 tolerated(0.18) benign(0.34) TCGA-39-5034-01 7 43601602 43601602 T A HECW1 3'UTR 0.37 TCGA-39-5034-01 7 44573140 44573140 G C NPC1L1 Missense_Mutation p.P767A 0.33 deleterious(0) probably_damaging(0.996) TCGA-39-5034-01 7 48556469 48556469 A G ABCA13 Missense_Mutation p.K4597E 0.47 probably_damaging(0.97) TCGA-39-5034-01 7 55565379 55565379 G A VOPP1 Missense_Mutation p.R40C 0.22 deleterious(0) probably_damaging(0.995) TCGA-39-5034-01 7 57188114 57188114 C T ZNF479 Nonsense_Mutation p.W336* 0.31 TCGA-39-5034-01 7 63709472 63709472 T A ZNF679 5'UTR 0.16 TCGA-39-5034-01 7 6629948 6629948 G A C7orf26 Missense_Mutation p.D12N 0.41 deleterious(0.02) probably_damaging(0.913) TCGA-39-5034-01 7 69364304 69364304 G A AUTS2 Silent p.V114V 0.20 TCGA-39-5034-01 7 70880963 70880963 G T WBSCR17 Silent p.L226L 0.24 TCGA-39-5034-01 7 71175763 71175763 G A WBSCR17 Silent p.K506K 0.34 TCGA-39-5034-01 7 71252688 71252688 G A CALN1 3'UTR 0.17 TCGA-39-5034-01 7 72040474 72040474 C A TYW1B 3'UTR 0.18 TCGA-39-5034-01 7 73152088 73152088 G A ABHD11 Intron 0.14 TCGA-39-5034-01 7 73790457 73790457 G T CLIP2 Missense_Mutation p.A576S 0.20 tolerated(0.09) benign(0.027) TCGA-39-5034-01 7 84628840 84628840 C A SEMA3D Missense_Mutation p.W750C 0.23 deleterious(0) probably_damaging(0.999) TCGA-39-5034-01 7 88963215 88963215 C A ZNF804B Missense_Mutation p.H307N 0.40 tolerated(1) benign(0) TCGA-39-5034-01 7 92028048 92028048 C A ANKIB1 Missense_Mutation p.P1019T 0.15 deleterious_low_confidence(0.04) benign(0.034) TCGA-39-5034-01 8 10159067 10159067 G T MSRA Missense_Mutation p.V119F 0.30 deleterious(0) probably_damaging(0.989) TCGA-39-5034-01 8 106810999 106810999 C - ZFPM2 Frame_Shift_Del p.R263Gfs*7 0.14 TCGA-39-5034-01 8 113318267 113318267 C A CSMD3 Missense_Mutation p.W2680C 0.15 deleterious(0) probably_damaging(0.998) TCGA-39-5034-01 8 114031359 114031359 G C CSMD3 Missense_Mutation p.L323V 0.18 tolerated(0.13) possibly_damaging(0.842) TCGA-39-5034-01 8 118847698 118847698 C A EXT1 Missense_Mutation p.E383D 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-39-5034-01 8 124382258 124382258 G A ATAD2 Missense_Mutation p.S245F 0.18 deleterious(0.01) benign(0.107) TCGA-39-5034-01 8 124978289 124978289 C A FER1L6 Silent p.S80S 0.11 TCGA-39-5034-01 8 125074157 125074157 T C FER1L6 Missense_Mutation p.F1071S 0.68 deleterious(0.01) probably_damaging(1) TCGA-39-5034-01 8 135649861 135649861 C G ZFAT Silent p.P97P 0.08 TCGA-39-5034-01 8 145640628 145640628 A T SLC39A4 Missense_Mutation p.V217D 0.05 tolerated(0.33) benign(0.03) TCGA-39-5034-01 8 20004770 20004770 A T SLC18A1 Missense_Mutation p.L488H 0.25 deleterious(0.04) probably_damaging(0.93) TCGA-39-5034-01 8 22548325 22548325 G C EGR3 Missense_Mutation p.H275Q 0.14 deleterious(0) probably_damaging(0.998) TCGA-39-5034-01 8 24251625 24251625 A G ADAMDEC1 Missense_Mutation p.R110G 0.45 tolerated(0.53) benign(0.015) TCGA-39-5034-01 8 26366139 26366139 A G PNMA2 Missense_Mutation p.S45P 0.42 tolerated(1) benign(0.001) TCGA-39-5034-01 8 28321212 28321212 C A FBXO16 Missense_Mutation p.D87Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-39-5034-01 8 30550519 30550519 C G GSR Missense_Mutation p.E283D 0.34 tolerated(0.12) benign(0.01) TCGA-39-5034-01 8 30651498 30651498 A T PPP2CB Missense_Mutation p.S225T 0.11 tolerated(0.49) benign(0.015) TCGA-39-5034-01 8 32585592 32585592 T C NRG1 Missense_Mutation p.C210R 0.17 deleterious(0) probably_damaging(0.997) TCGA-39-5034-01 8 3326338 3326338 C A CSMD1 Missense_Mutation p.G486V 0.20 probably_damaging(0.987) TCGA-39-5034-01 8 37688965 37688965 C A GPR124 Silent p.G319G 0.35 TCGA-39-5034-01 8 38117592 38117592 G C DDHD2 Missense_Mutation p.E697Q 0.12 deleterious(0) probably_damaging(1) TCGA-39-5034-01 8 38883347 38883347 G T ADAM9 Nonsense_Mutation p.G314* 0.66 TCGA-39-5034-01 8 52733180 52733180 G T PCMTD1 Missense_Mutation p.P269T 0.04 tolerated(0.55) benign(0.001) TCGA-39-5034-01 8 82195673 82195673 A T FABP5 Missense_Mutation p.N51I 0.10 tolerated(0.41) benign(0.031) TCGA-39-5034-01 8 87081759 87081759 G T PSKH2 Silent p.G31G 0.16 TCGA-39-5034-01 8 87229852 87229852 T A SLC7A13 Silent p.L342L 0.65 TCGA-39-5034-01 8 91095049 91095049 G T CALB1 5'UTR 0.16 TCGA-39-5034-01 8 92307811 92307811 C A SLC26A7 Silent p.V119V 0.17 TCGA-39-5034-01 8 94767200 94767200 C T TMEM67 Missense_Mutation p.R20W 0.14 deleterious_low_confidence(0.02) benign(0.232) TCGA-39-5034-01 9 104341565 104341565 G T GRIN3A Silent p.T948T 0.55 TCGA-39-5034-01 9 113734412 113734412 T A LPAR1 5'UTR 0.54 TCGA-39-5034-01 9 119976858 119976858 C A ASTN2 Missense_Mutation p.R265L 0.50 deleterious_low_confidence(0) unknown(0) TCGA-39-5034-01 9 123220897 123220897 T - CDK5RAP2 Frame_Shift_Del p.M736* 0.21 TCGA-39-5034-01 9 124855655 124855655 C T TTLL11 Missense_Mutation p.A15T 1.00 tolerated_low_confidence(0.49) benign(0.001) TCGA-39-5034-01 9 125273598 125273598 C T OR1J2 Missense_Mutation p.T173I 0.46 tolerated_low_confidence(0.33) benign(0.019) TCGA-39-5034-01 9 125563063 125563063 C T OR1K1 Missense_Mutation p.A221V 0.17 tolerated(0.48) benign(0.444) TCGA-39-5034-01 9 130830848 130830848 G T SLC25A25 Missense_Mutation p.G84C 0.67 deleterious(0.01) benign(0.064) TCGA-39-5034-01 9 13137985 13137985 G A MPDZ Nonsense_Mutation p.R1391* 0.30 TCGA-39-5034-01 9 139733362 139733362 G C RABL6 Missense_Mutation p.D429H 0.56 deleterious(0) benign(0.01) TCGA-39-5034-01 9 140008752 140008752 C A DPP7 Silent p.S88S 0.70 TCGA-39-5034-01 9 21440678 21440678 G T IFNA1 Missense_Mutation p.D58Y 0.49 deleterious(0.02) possibly_damaging(0.77) TCGA-39-5034-01 9 27949272 27949272 G C LINGO2 Silent p.G466G 0.22 TCGA-39-5034-01 9 32542658 32542658 T C TOPORS Missense_Mutation p.K622R 0.42 tolerated(0.35) unknown(0) TCGA-39-5034-01 9 37537381 37537381 C A FBXO10 Missense_Mutation p.R382L 0.50 tolerated(0.67) benign(0.125) TCGA-39-5034-01 9 37740242 37740242 C A FRMPD1 Missense_Mutation p.P573T 0.46 tolerated(0.1) benign(0.118) TCGA-39-5034-01 9 43709737 43709737 T A CNTNAP3B Missense_Mutation p.F58Y 0.26 tolerated(0.31) probably_damaging(0.985) TCGA-39-5034-01 9 5534920 5534920 G A PDCD1LG2 Silent p.E77E 0.12 TCGA-39-5034-01 9 72131497 72131497 G T APBA1 Silent p.R210R 0.56 TCGA-39-5034-01 9 84609961 84609961 C A SPATA31D1 Missense_Mutation p.H1526N 0.43 tolerated(0.12) benign(0.387) TCGA-39-5034-01 9 91994467 91994467 T G SEMA4D Missense_Mutation p.N581H 0.26 deleterious(0.01) probably_damaging(0.991) TCGA-39-5034-01 9 990868 990868 C G DMRT3 Missense_Mutation p.R428G 0.21 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-39-5034-01 X 101138757 101138757 C A ZMAT1 Missense_Mutation p.G548C 0.50 deleterious(0) probably_damaging(0.989) TCGA-39-5034-01 X 101971772 101971772 T C GPRASP2 Silent p.L659L 0.10 TCGA-39-5034-01 X 118215298 118215298 C G KIAA1210 Silent p.T1708T 0.49 TCGA-39-5034-01 X 122755409 122755409 T C THOC2 Missense_Mutation p.E1272G 0.28 tolerated(0.09) benign(0.219) TCGA-39-5034-01 X 125686219 125686219 C A DCAF12L1 Missense_Mutation p.V125L 0.49 deleterious(0.03) possibly_damaging(0.81) TCGA-39-5034-01 X 135429037 135429037 A G GPR112 Missense_Mutation p.T1058A 0.59 tolerated(0.07) probably_damaging(0.994) TCGA-39-5034-01 X 138644188 138644188 C A F9 Silent p.S448S 0.47 TCGA-39-5034-01 X 139866601 139866601 C A CDR1 5'UTR 0.61 TCGA-39-5034-01 X 149013059 149013059 C A MAGEA8 Missense_Mutation p.Q5K 0.43 tolerated(0.17) possibly_damaging(0.803) TCGA-39-5034-01 X 149896249 149896249 G A MTMR1 Missense_Mutation p.E173K 0.55 deleterious(0.01) benign(0.063) TCGA-39-5034-01 X 153689102 153689102 G T PLXNA3 Silent p.A193A 0.50 TCGA-39-5034-01 X 153881678 153881678 C A CTAG2 Missense_Mutation p.G38C 0.59 deleterious_low_confidence(0) unknown(0) TCGA-39-5034-01 X 17818577 17818577 G T RAI2 Silent p.I518I 0.04 TCGA-39-5034-01 X 18767960 18767960 G T PPEF1 Missense_Mutation p.D96Y 0.51 deleterious(0) possibly_damaging(0.702) TCGA-39-5034-01 X 23412069 23412069 C G PTCHD1 Missense_Mutation p.L812V 0.05 tolerated(0.1) benign(0.114) TCGA-39-5034-01 X 27840394 27840394 C T MAGEB10 Missense_Mutation p.A324V 0.34 tolerated(0.08) unknown(0) TCGA-39-5034-01 X 27840403 27840403 G T MAGEB10 Missense_Mutation p.R327L 0.38 tolerated(0.31) unknown(0) TCGA-39-5034-01 X 3228954 3228954 C A MXRA5 Silent p.T2430T 0.59 TCGA-39-5034-01 X 37700278 37700278 T A DYNLT3 Intron 0.42 TCGA-39-5034-01 X 47444706 47444706 C T TIMP1 Missense_Mutation p.R102C 0.53 deleterious(0) probably_damaging(0.983) TCGA-39-5034-01 X 48687701 48687701 G C ERAS Silent p.A56A 0.05 TCGA-39-5034-01 X 54841108 54841108 C A MAGED2 Missense_Mutation p.A429D 0.05 deleterious(0.01) possibly_damaging(0.653) TCGA-39-5034-01 X 79960259 79960259 C A BRWD3 Missense_Mutation p.R880L 0.55 tolerated(0.07) benign(0.177) TCGA-39-5034-01 X 83129557 83129557 C A CYLC1 Missense_Mutation p.P614H 0.59 deleterious(0) probably_damaging(0.975) TCGA-39-5034-01 X 83724080 83724080 G C HDX Missense_Mutation p.H217Q 0.52 tolerated(0.21) benign(0.007) TCGA-39-5034-01 X 85994824 85994824 C T DACH2 Silent p.S393S 0.50 TCGA-39-5034-01 X 90691003 90691003 G T PABPC5 Missense_Mutation p.G143C 0.46 deleterious(0) probably_damaging(0.947) TCGA-39-5034-01 X 91131881 91131881 C A PCDH11X Silent p.T214T 0.53 TCGA-39-5035-01 10 128150141 128150141 G A C10orf90 Silent p.C516C 0.10 TCGA-39-5035-01 10 135204834 135204834 G A RP11-108K14.8 Missense_Mutation p.G10E 0.19 tolerated_low_confidence(0.36) benign(0) TCGA-39-5035-01 10 17278303 17278303 G T VIM Silent p.L428L 0.27 TCGA-39-5035-01 10 17278304 17278304 G T VIM Missense_Mutation p.D429Y 0.27 deleterious(0.02) possibly_damaging(0.867) TCGA-39-5035-01 10 17645632 17645632 G A PTPLA Missense_Mutation p.S137F 0.15 deleterious(0) possibly_damaging(0.829) TCGA-39-5035-01 10 27223358 27223358 T C LINC00202-1 RNA 0.12 TCGA-39-5035-01 10 28348669 28348669 G A MPP7 Missense_Mutation p.T403I 0.34 deleterious(0) probably_damaging(0.994) TCGA-39-5035-01 10 48414384 48414384 G T GDF2 Missense_Mutation p.P162T 0.12 tolerated(0.6) benign(0.002) TCGA-39-5035-01 10 55582652 55582652 T G PCDH15 Missense_Mutation p.T1614P 0.14 tolerated_low_confidence(0.1) benign(0.002) TCGA-39-5035-01 10 70097753 70097753 G T HNRNPH3 Missense_Mutation p.R84M 0.29 tolerated(0.05) unknown(0) TCGA-39-5035-01 10 70097754 70097754 G T HNRNPH3 Splice_Site p.X84_splice 0.30 TCGA-39-5035-01 10 71969329 71969329 T A PPA1 Silent p.A208A 0.43 TCGA-39-5035-01 10 7409714 7409714 G A SFMBT2 Silent p.Y111Y 0.15 TCGA-39-5035-01 10 93999117 93999117 G C CPEB3 Missense_Mutation p.L331V 0.13 tolerated(0.26) benign(0.009) TCGA-39-5035-01 11 10514980 10514980 G A AMPD3 Missense_Mutation p.D351N 0.17 tolerated(0.15) benign(0.004) TCGA-39-5035-01 11 10526199 10526199 C T AMPD3 Missense_Mutation p.S716L 0.18 deleterious(0.01) probably_damaging(0.916) TCGA-39-5035-01 11 108357165 108357165 G A KDELC2 Missense_Mutation p.P135S 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-39-5035-01 11 117869979 117869979 G A IL10RA Missense_Mutation p.E454K 0.19 tolerated(0.06) benign(0.11) TCGA-39-5035-01 11 118134903 118134903 G A MPZL2 5'UTR 0.16 TCGA-39-5035-01 11 121028738 121028738 C T TECTA Silent p.F1498F 0.55 TCGA-39-5035-01 11 123513295 123513295 C T SCN3B Missense_Mutation p.D102N 0.28 deleterious(0) probably_damaging(0.977) TCGA-39-5035-01 11 18195510 18195510 G A MRGPRX4 Missense_Mutation p.G236E 0.16 deleterious(0.01) benign(0.018) TCGA-39-5035-01 11 30033613 30033613 G T KCNA4 Missense_Mutation p.P205T 0.13 deleterious(0) probably_damaging(0.996) TCGA-39-5035-01 11 47355472 47355472 C T MYBPC3 Splice_Site p.X998_splice 0.27 TCGA-39-5035-01 11 57575873 57575873 C T CTNND1 Silent p.Y701Y 0.28 TCGA-39-5035-01 11 60234454 60234454 T A MS4A1 Missense_Mutation p.I199N 0.11 deleterious(0) possibly_damaging(0.89) TCGA-39-5035-01 11 6023942 6023942 G C OR56A4 Missense_Mutation p.S146W 0.24 deleterious(0) probably_damaging(0.953) TCGA-39-5035-01 11 65427630 65427630 C G RELA Missense_Mutation p.S131T 0.24 tolerated(0.54) benign(0.002) TCGA-39-5035-01 11 774114 774114 C T PDDC1 Splice_Site p.X48_splice 0.24 TCGA-39-5035-01 11 92532480 92532480 A T FAT3 Missense_Mutation p.T2101S 0.12 benign(0.091) TCGA-39-5035-01 12 102590466 102590466 C T PMCH Missense_Mutation p.M154I 0.28 deleterious(0) possibly_damaging(0.76) TCGA-39-5035-01 12 10588420 10588420 C G KLRC2 Missense_Mutation p.D56H 0.12 deleterious(0.01) possibly_damaging(0.849) TCGA-39-5035-01 12 130841573 130841573 T C PIWIL1 Silent p.Y505Y 0.24 TCGA-39-5035-01 12 22637741 22637741 G A C2CD5 Silent p.L480L 0.28 TCGA-39-5035-01 12 22637746 22637746 G A C2CD5 Missense_Mutation p.H479Y 0.29 deleterious(0.02) benign(0.001) TCGA-39-5035-01 12 250351 250351 G A IQSEC3 Missense_Mutation p.G685S 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-39-5035-01 12 25243095 25243095 G A LRMP Silent p.L190L 0.38 TCGA-39-5035-01 12 40114814 40114814 G T C12orf40 Missense_Mutation p.A574S 0.18 tolerated(0.3) benign(0.067) TCGA-39-5035-01 12 52162811 52162811 C G SCN8A Missense_Mutation p.H1022D 0.16 tolerated(0.63) benign(0.266) TCGA-39-5035-01 12 549899 549899 G C CCDC77 Missense_Mutation p.E386D 0.15 tolerated(0.14) probably_damaging(0.93) TCGA-39-5035-01 12 6638690 6638690 C G NCAPD2 Missense_Mutation p.S1195C 0.28 deleterious(0) benign(0.141) TCGA-39-5035-01 12 9754178 9754178 G C KLRB1 Missense_Mutation p.P35A 0.11 tolerated(0.87) benign(0.005) TCGA-39-5035-01 13 101763505 101763505 G A NALCN Silent p.S755S 0.11 TCGA-39-5035-01 13 28897007 28897007 T C FLT1 Missense_Mutation p.D958G 0.15 tolerated(0.32) benign(0.015) TCGA-39-5035-01 15 100246988 100246988 G A MEF2A Missense_Mutation p.V307M 0.33 deleterious(0) probably_damaging(0.987) TCGA-39-5035-01 15 22368561 22368561 G A OR4M2 5'UTR 0.12 TCGA-39-5035-01 15 28202861 28202861 C T OCA2 Missense_Mutation p.V553I 0.31 tolerated(0.4) possibly_damaging(0.683) TCGA-39-5035-01 15 41650394 41650394 G C NUSAP1 Missense_Mutation p.D200H 0.20 deleterious(0.01) benign(0.247) TCGA-39-5035-01 15 49030440 49030440 C T CEP152 3'UTR 0.17 TCGA-39-5035-01 15 63084980 63084980 G C TLN2 Silent p.T1959T 0.23 TCGA-39-5035-01 15 77471165 77471165 G C PEAK1 Missense_Mutation p.S1035C 0.28 deleterious(0.03) benign(0.006) TCGA-39-5035-01 16 22319508 22319508 C A POLR3E Missense_Mutation p.P43T 0.14 tolerated(0.86) benign(0.004) TCGA-39-5035-01 16 3658855 3658855 G T SLX4 Missense_Mutation p.S37R 0.13 tolerated(0.5) benign(0.133) TCGA-39-5035-01 16 57951265 57951265 C A CNGB1 Missense_Mutation p.W691C 0.18 deleterious(0) probably_damaging(0.998) TCGA-39-5035-01 16 70500096 70500096 C G FUK Missense_Mutation p.P116R 0.43 deleterious(0.04) benign(0.049) TCGA-39-5035-01 16 72845910 72845910 A C ZFHX3 Missense_Mutation p.L1186R 0.30 benign(0.276) TCGA-39-5035-01 16 74695345 74695345 C A RFWD3 Translation_Start_Site p.M1? 0.24 deleterious_low_confidence(0.01) benign(0.104) TCGA-39-5035-01 17 3474819 3474819 T A SHPK Missense_Mutation p.R782S 0.58 deleterious(0.01) benign(0.371) TCGA-39-5035-01 17 37864713 37864713 C T ERBB2 Missense_Mutation p.P122L 0.38 tolerated(0.35) benign(0.002) TCGA-39-5035-01 17 45822825 45822825 C A TBX21 3'UTR 0.32 TCGA-39-5035-01 17 48050472 48050472 G T DLX4 Nonsense_Mutation p.E107* 0.37 TCGA-39-5035-01 17 6337412 6337412 A C AIPL1 Missense_Mutation p.F35V 0.32 deleterious(0) probably_damaging(1) TCGA-39-5035-01 17 7139897 7139897 A C PHF23 Missense_Mutation p.S117A 0.35 tolerated_low_confidence(0.18) benign(0.004) TCGA-39-5035-01 17 7578457 7578457 C T TP53 Missense_Mutation p.R158H 0.44 tolerated(0.1) benign(0.438) TCGA-39-5035-01 18 59942704 59942704 G A KIAA1468 Missense_Mutation p.E989K 0.18 deleterious(0.02) probably_damaging(0.992) TCGA-39-5035-01 18 67993357 67993357 G A SOCS6 Missense_Mutation p.V485I 0.17 deleterious(0.01) probably_damaging(0.982) TCGA-39-5035-01 18 77659474 77659474 C G KCNG2 Missense_Mutation p.F353L 0.19 deleterious(0) probably_damaging(0.919) TCGA-39-5035-01 18 9254528 9254528 C G ANKRD12 Silent p.V421V 0.13 TCGA-39-5035-01 19 12878912 12878912 T A HOOK2 Missense_Mutation p.Q377L 0.72 deleterious(0) benign(0.007) TCGA-39-5035-01 19 15164318 15164318 G C CASP14 Missense_Mutation p.R18P 0.14 deleterious(0) probably_damaging(0.973) TCGA-39-5035-01 19 15791259 15791259 C T CYP4F12 Missense_Mutation p.T152M 0.22 deleterious(0.01) probably_damaging(0.957) TCGA-39-5035-01 19 17265133 17265133 G C MYO9B Missense_Mutation p.L369F 0.16 tolerated(0.45) benign(0.398) TCGA-39-5035-01 19 17442022 17442022 C G ANO8 Missense_Mutation p.D236H 0.48 deleterious(0.02) benign(0.358) TCGA-39-5035-01 19 19381140 19381140 C T TM6SF2 Intron 0.61 TCGA-39-5035-01 19 19381156 19381156 C T TM6SF2 Missense_Mutation p.E99K 0.69 tolerated(0.07) possibly_damaging(0.824) TCGA-39-5035-01 19 22780133 22780133 G T RN7SL860P 5'Flank 0.15 TCGA-39-5035-01 19 39998799 39998799 C G DLL3 3'UTR 0.23 TCGA-39-5035-01 19 40336971 40336971 C A FBL 5'UTR 0.29 TCGA-39-5035-01 19 41381560 41381560 G T CYP2A7 3'UTR 0.04 TCGA-39-5035-01 19 45656363 45656363 C T NKPD1 Silent p.L444L 0.18 TCGA-39-5035-01 19 54395051 54395051 C G PRKCG Missense_Mutation p.T218R 0.27 deleterious(0.02) possibly_damaging(0.816) TCGA-39-5035-01 19 57647047 57647047 C G ZIM3 Missense_Mutation p.E220Q 0.22 deleterious(0.01) benign(0.153) TCGA-39-5035-01 19 57803639 57803639 C T ZNF460 3'UTR 0.26 TCGA-39-5035-01 19 8389685 8389685 G A KANK3 Silent p.I704I 0.27 TCGA-39-5035-01 19 9727722 9727722 C T ZNF561 Silent p.V80V 0.20 TCGA-39-5035-01 1 109271432 109271432 A G FNDC7 Silent p.S516S 0.10 TCGA-39-5035-01 1 118567962 118567962 C G SPAG17 Missense_Mutation p.E1270Q 0.21 tolerated(0.4) benign(0.321) TCGA-39-5035-01 1 12941715 12941715 A G PRAMEF4 Missense_Mutation p.S279P 0.12 deleterious(0.01) benign(0.014) TCGA-39-5035-01 1 144865917 144865917 T A PDE4DIP Missense_Mutation p.N1888I 0.14 deleterious(0) benign(0.149) TCGA-39-5035-01 1 145498774 145498774 G A LIX1L Missense_Mutation p.C337Y 0.29 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-39-5035-01 1 149859324 149859324 G C HIST2H2AB Missense_Mutation p.A48G 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.873) TCGA-39-5035-01 1 152281822 152281822 G A FLG Missense_Mutation p.T1847M 0.32 possibly_damaging(0.791) TCGA-39-5035-01 1 160789114 160789114 C G LY9 Nonsense_Mutation p.S483* 0.28 TCGA-39-5035-01 1 17023103 17023103 G C ESPNP RNA 0.16 TCGA-39-5035-01 1 170521750 170521750 C T GORAB 3'UTR 0.30 TCGA-39-5035-01 1 171755047 171755047 C G METTL13 Silent p.L314L 0.22 TCGA-39-5035-01 1 175092792 175092792 C G TNN Silent p.A969A 0.06 TCGA-39-5035-01 1 177250258 177250258 G A BRINP2 Missense_Mutation p.R649Q 0.17 deleterious(0.05) probably_damaging(0.992) TCGA-39-5035-01 1 177937043 177937043 C T SEC16B Missense_Mutation p.R25Q 0.33 tolerated(0.1) benign(0.048) TCGA-39-5035-01 1 186308815 186308815 T C TPR Silent p.Q1370Q 0.21 TCGA-39-5035-01 1 19212114 19212114 G C ALDH4A1 Silent p.L102L 0.20 TCGA-39-5035-01 1 207304941 207304941 C T C4BPA Missense_Mutation p.P314S 0.30 tolerated(0.59) benign(0.024) TCGA-39-5035-01 1 210267799 210267799 C T SYT14 Missense_Mutation p.S237F 0.29 deleterious(0) benign(0.031) TCGA-39-5035-01 1 23395630 23395630 G T KDM1A Nonsense_Mutation p.E467* 0.17 TCGA-39-5035-01 1 247769169 247769169 C T OR2G3 Silent p.Y94Y 0.32 TCGA-39-5035-01 1 248308860 248308860 A C OR2M5 Missense_Mutation p.R137S 0.15 tolerated(1) benign(0) TCGA-39-5035-01 1 35915491 35915491 C T KIAA0319L Missense_Mutation p.R777Q 0.29 tolerated(0.39) benign(0.019) TCGA-39-5035-01 1 46093993 46093993 C G GPBP1L1 Missense_Mutation p.E454Q 0.16 tolerated(0.2) benign(0.015) TCGA-39-5035-01 1 47283815 47283815 C G CYP4B1 Missense_Mutation p.L429V 0.53 tolerated(0.07) possibly_damaging(0.447) TCGA-39-5035-01 1 50572062 50572062 T C ELAVL4 Silent p.F19F 0.13 TCGA-39-5035-01 1 57349275 57349275 G C C8A Missense_Mutation p.S259T 0.11 tolerated(0.44) benign(0.003) TCGA-39-5035-01 1 67154905 67154905 C T SGIP1 Missense_Mutation p.R464W 0.21 deleterious(0) probably_damaging(0.973) TCGA-39-5035-01 1 67154906 67154906 G T SGIP1 Missense_Mutation p.R464L 0.22 deleterious(0) probably_damaging(0.931) TCGA-39-5035-01 1 79095529 79095529 A C IFI44L Missense_Mutation p.K218Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-39-5035-01 1 92941572 92941572 G A GFI1 3'UTR 0.23 TCGA-39-5035-01 20 23472426 23472426 C T CST8 Missense_Mutation p.S41L 0.34 deleterious(0) probably_damaging(0.962) TCGA-39-5035-01 20 43108970 43108970 G A TTPAL Missense_Mutation p.E111K 0.14 deleterious(0.02) possibly_damaging(0.73) TCGA-39-5035-01 20 44444263 44444263 G A UBE2C Silent p.T100T 0.14 TCGA-39-5035-01 20 58416495 58416495 C T PHACTR3 Silent p.L498L 0.11 TCGA-39-5035-01 20 60893681 60893681 C G LAMA5 Silent p.L2356L 0.41 TCGA-39-5035-01 20 60893954 60893954 C T LAMA5 Silent p.R2329R 0.47 TCGA-39-5035-01 20 61341012 61341012 C A NTSR1 Nonsense_Mutation p.C151* 0.32 TCGA-39-5035-01 20 62705589 62705589 C T RGS19 Missense_Mutation p.E124K 0.33 deleterious(0) probably_damaging(0.999) TCGA-39-5035-01 21 41719705 41719705 C G DSCAM Missense_Mutation p.E368Q 0.37 tolerated(0.11) probably_damaging(0.997) TCGA-39-5035-01 21 45706449 45706449 C T AIRE Missense_Mutation p.H48Y 0.10 tolerated(0.19) benign(0.233) TCGA-39-5035-01 22 17071946 17071946 C T CCT8L2 Missense_Mutation p.V499I 0.33 deleterious(0.01) benign(0.119) TCGA-39-5035-01 2 130833091 130833091 G A POTEF Missense_Mutation p.R652W 0.21 deleterious_low_confidence(0) benign(0) TCGA-39-5035-01 2 158114721 158114721 C T GALNT5 Missense_Mutation p.R43W 0.23 deleterious(0) possibly_damaging(0.724) TCGA-39-5035-01 2 167298201 167298201 C T SCN7A Missense_Mutation p.S621N 0.28 deleterious(0.04) benign(0.006) TCGA-39-5035-01 2 179428793 179428793 C A TTN Missense_Mutation p.G27356C 0.28 TCGA-39-5035-01 2 179569463 179569463 C G TTN Missense_Mutation p.L9912F 0.11 TCGA-39-5035-01 2 189855088 189855088 T G COL3A1 Splice_Site p.X266_splice 0.16 TCGA-39-5035-01 2 45616517 45616517 C T SRBD1 Missense_Mutation p.E974K 0.28 deleterious(0) probably_damaging(0.983) TCGA-39-5035-01 2 69208054 69208054 C G GKN1 3'UTR 0.17 TCGA-39-5035-01 2 97464826 97464828 GAG AA CNNM4 Frame_Shift_Del p.E572Kfs*58 0.25 TCGA-39-5035-01 3 105572277 105572277 C T CBLB Missense_Mutation p.E134K 0.26 deleterious(0.01) possibly_damaging(0.684) TCGA-39-5035-01 3 119121048 119121048 G A ARHGAP31 Silent p.A483A 0.12 TCGA-39-5035-01 3 122287849 122287849 C T DTX3L Silent p.L305L 0.14 TCGA-39-5035-01 3 140397053 140397053 T G TRIM42 5'UTR 0.30 TCGA-39-5035-01 3 141535632 141535632 G A GRK7 Missense_Mutation p.E468K 0.21 tolerated(0.2) benign(0.211) TCGA-39-5035-01 3 141535701 141535701 G C GRK7 Missense_Mutation p.E491Q 0.22 deleterious(0.02) probably_damaging(0.961) TCGA-39-5035-01 3 147114108 147114108 C T ZIC4 Silent p.A123A 0.18 TCGA-39-5035-01 3 183907053 183907053 C T ABCF3 Silent p.L349L 0.17 TCGA-39-5035-01 3 184038429 184038429 A T EIF4G1 Silent p.R190R 0.20 TCGA-39-5035-01 3 195622267 195622267 G A TNK2 Silent p.P7P 0.22 TCGA-39-5035-01 3 39228401 39228401 G A XIRP1 Silent p.L846L 0.38 TCGA-39-5035-01 3 53684870 53684870 A G CACNA1D Missense_Mutation p.Y183C 0.33 deleterious(0) probably_damaging(0.999) TCGA-39-5035-01 3 7620793 7620793 G C GRM7 Missense_Mutation p.E734Q 0.38 tolerated(0.09) probably_damaging(0.996) TCGA-39-5035-01 4 146807209 146807209 C A ZNF827 Missense_Mutation p.Q456H 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-39-5035-01 4 55955889 55955889 A G KDR Silent p.F1091F 0.36 TCGA-39-5035-01 4 79437159 79437159 G A FRAS1 Missense_Mutation p.D3461N 0.47 probably_damaging(0.971) TCGA-39-5035-01 5 140168014 140168014 C G PCDHA1 Silent p.L713L 0.24 TCGA-39-5035-01 5 140604601 140604601 G C PCDHB14 Silent p.A508A 0.14 TCGA-39-5035-01 5 176003183 176003183 C T CDHR2 Silent p.D397D 0.18 TCGA-39-5035-01 5 178392301 178392301 C A ZNF454 Missense_Mutation p.P299H 0.39 deleterious(0) probably_damaging(1) TCGA-39-5035-01 5 40998193 40998193 G A MROH2B Silent p.T1573T 0.58 TCGA-39-5035-01 5 50128660 50128660 C T PARP8 Missense_Mutation p.S760L 0.34 tolerated(0.15) possibly_damaging(0.796) TCGA-39-5035-01 5 76331618 76331618 C G AGGF1 Intron 0.33 TCGA-39-5035-01 5 79752839 79752839 C T ZFYVE16 Missense_Mutation p.H1291Y 0.42 deleterious(0) benign(0.094) TCGA-39-5035-01 5 90449047 90449047 G A GPR98 Missense_Mutation p.D6212N 0.39 possibly_damaging(0.811) TCGA-39-5035-01 5 94022307 94022307 A G ANKRD32 Missense_Mutation p.I669V 0.20 tolerated(0.09) benign(0.194) TCGA-39-5035-01 6 133833901 133833901 A G EYA4 Missense_Mutation p.N442D 0.38 deleterious(0) possibly_damaging(0.744) TCGA-39-5035-01 6 138192646 138192646 G C TNFAIP3 Silent p.A94A 0.28 TCGA-39-5035-01 6 147124107 147124107 A G ADGB Intron 0.11 TCGA-39-5035-01 6 159046221 159046221 G A TMEM181 Missense_Mutation p.R484H 0.23 deleterious(0.03) benign(0.12) TCGA-39-5035-01 6 168317906 168317906 C T MLLT4 Silent p.I894I 0.34 TCGA-39-5035-01 6 169637755 169637755 G T THBS2 Missense_Mutation p.T422K 0.14 deleterious(0.01) probably_damaging(0.958) TCGA-39-5035-01 6 26156778 26156778 C T HIST1H1E Missense_Mutation p.R54C 0.15 deleterious(0) possibly_damaging(0.658) TCGA-39-5035-01 6 29797255 29797255 G C HLA-G Missense_Mutation p.C227S 0.05 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-39-5035-01 6 38743618 38743618 G T DNAH8 Missense_Mutation p.R401I 0.14 benign(0.034) TCGA-39-5035-01 6 42044885 42044885 C A TAF8 Missense_Mutation p.N276K 0.10 tolerated(0.62) benign(0.014) TCGA-39-5035-01 6 43480208 43480208 G A YIPF3 Silent p.L292L 0.18 TCGA-39-5035-01 6 51524604 51524604 G C PKHD1 Silent p.V3440V 0.35 TCGA-39-5035-01 6 55739436 55739436 A C BMP5 Silent p.S76S 0.17 TCGA-39-5035-01 6 7571678 7571678 A G DSP Silent p.Q588Q 0.38 TCGA-39-5035-01 7 105516995 105516995 C T ATXN7L1 Missense_Mutation p.E4K 0.20 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-39-5035-01 7 107427307 107427307 C G SLC26A3 Missense_Mutation p.R312S 0.17 tolerated(0.45) possibly_damaging(0.72) TCGA-39-5035-01 7 117386086 117386086 T G CTTNBP2 Missense_Mutation p.Q1139P 0.36 deleterious(0.02) probably_damaging(0.991) TCGA-39-5035-01 7 38402580 38402580 C A TRGV2 Missense_Mutation p.G80V 0.18 deleterious(0) probably_damaging(0.995) TCGA-39-5035-01 7 4823974 4823974 C G AP5Z1 Silent p.G254G 0.44 TCGA-39-5035-01 7 95216387 95216387 A G PDK4 Missense_Mutation p.F344L 0.06 tolerated(0.13) probably_damaging(0.996) TCGA-39-5035-01 7 99821238 99821238 C T GATS 3'UTR 0.12 TCGA-39-5035-01 8 121237336 121237336 G T COL14A1 Missense_Mutation p.D583Y 0.21 deleterious(0.03) probably_damaging(0.993) TCGA-39-5035-01 8 134060111 134060111 C G SLA Missense_Mutation p.G146R 0.04 deleterious(0) probably_damaging(0.998) TCGA-39-5035-01 8 145006636 145006636 C A PLEC Nonsense_Mutation p.E774* 0.22 TCGA-39-5035-01 8 30546779 30546779 G A GSR Missense_Mutation p.P314S 0.21 tolerated(0.27) benign(0.162) TCGA-39-5035-01 9 80879233 80879233 G A CEP78 Splice_Site p.X543_splice 0.31 TCGA-39-5035-01 X 111195573 111195573 C T TRPC5 Missense_Mutation p.E26K 0.18 deleterious(0.01) probably_damaging(0.965) TCGA-39-5035-01 X 111698850 111698850 T G ZCCHC16 Silent p.S298S 0.10 TCGA-39-5035-01 X 117764395 117764395 G C DOCK11 Missense_Mutation p.Q1276H 0.10 deleterious(0.04) possibly_damaging(0.641) TCGA-39-5035-01 X 120182719 120182719 C A GLUD2 Missense_Mutation p.P394H 0.17 tolerated(0.48) benign(0.003) TCGA-39-5035-01 X 123515073 123515073 C T TENM1 Missense_Mutation p.M2504I 0.15 tolerated(0.23) benign(0.017) TCGA-39-5035-01 X 138643729 138643729 T G F9 Missense_Mutation p.N295K 0.22 tolerated(0.94) benign(0.008) TCGA-39-5035-01 X 15609979 15609979 C A ACE2 Missense_Mutation p.G147V 0.34 deleterious(0) probably_damaging(0.969) TCGA-39-5035-01 X 3248135 3248135 A T MXRA5 Missense_Mutation p.N211K 0.24 deleterious(0) probably_damaging(0.914) TCGA-39-5035-01 X 52681966 52681966 G C SSX7 Missense_Mutation p.I46M 0.32 deleterious(0) probably_damaging(0.999) TCGA-39-5035-01 X 54359719 54359719 C T WNK3 Missense_Mutation p.E130K 0.22 deleterious(0) probably_damaging(0.999) TCGA-39-5035-01 X 69420307 69420307 T C DGAT2L6 Missense_Mutation p.M157T 0.18 tolerated(1) benign(0.257) TCGA-39-5035-01 X 69615553 69615553 C T KIF4A Silent p.V755V 0.14 TCGA-39-5035-01 X 70466282 70466282 C G ZMYM3 Missense_Mutation p.K831N 0.17 deleterious(0) probably_damaging(0.991) TCGA-39-5035-01 X 96139743 96139743 T C RPA4 Missense_Mutation p.I145T 0.18 deleterious(0) probably_damaging(0.975) TCGA-39-5036-01 10 126172723 126172723 G A LHPP Silent p.R47R 0.07 TCGA-39-5036-01 10 16870833 16870833 A T CUBN Missense_Mutation p.S3579T 0.07 tolerated(0.11) possibly_damaging(0.507) TCGA-39-5036-01 10 17271981 17271981 A G VIM Missense_Mutation p.E187G 0.30 tolerated(0.16) probably_damaging(0.95) TCGA-39-5036-01 10 18254536 18254536 G T SLC39A12 Missense_Mutation p.G223V 0.22 deleterious(0.01) probably_damaging(0.943) TCGA-39-5036-01 10 26432395 26432395 G C MYO3A Missense_Mutation p.D761H 0.38 deleterious(0.01) possibly_damaging(0.657) TCGA-39-5036-01 10 37422867 37422867 G A ANKRD30A Missense_Mutation p.C158Y 0.11 tolerated(0.23) benign(0.002) TCGA-39-5036-01 10 37454039 37454039 G A ANKRD30A Missense_Mutation p.E618K 0.26 tolerated(0.44) possibly_damaging(0.636) TCGA-39-5036-01 10 50835781 50835781 C A CHAT Missense_Mutation p.T354K 0.43 deleterious(0.01) probably_damaging(0.973) TCGA-39-5036-01 10 73406254 73406254 T C CDH23 Silent p.Y35Y 0.39 TCGA-39-5036-01 10 82187220 82187220 G A FAM213A Missense_Mutation p.G182R 0.45 deleterious(0) probably_damaging(1) TCGA-39-5036-01 10 95093544 95093544 C G MYOF Missense_Mutation p.E1564Q 0.17 tolerated(0.09) benign(0.005) TCGA-39-5036-01 10 95791902 95791902 A G PLCE1 Missense_Mutation p.K367E 0.46 deleterious_low_confidence(0.04) benign(0.009) TCGA-39-5036-01 11 101833133 101833133 G C KIAA1377 Missense_Mutation p.C456S 0.07 tolerated(0.51) benign(0.008) TCGA-39-5036-01 11 105850479 105850479 T A GRIA4 3'UTR 0.45 TCGA-39-5036-01 11 105880331 105880331 C T MSANTD4 Silent p.Q323Q 0.04 TCGA-39-5036-01 11 118175632 118175632 G A CD3E 5'UTR 0.10 TCGA-39-5036-01 11 118638961 118638961 G A DDX6 Missense_Mutation p.R157W 0.34 deleterious(0) probably_damaging(0.964) TCGA-39-5036-01 11 124252781 124252781 C A OR8B2 Missense_Mutation p.L153F 0.38 tolerated_low_confidence(1) benign(0.003) TCGA-39-5036-01 11 18051058 18051058 C T TPH1 Splice_Site p.X157_splice 0.27 TCGA-39-5036-01 11 20668426 20668426 G T SLC6A5 Missense_Mutation p.Q672H 0.32 tolerated(0.06) possibly_damaging(0.726) TCGA-39-5036-01 11 27016328 27016328 C A FIBIN Silent p.T85T 0.22 TCGA-39-5036-01 11 30946900 30946900 C T DCDC1 Missense_Mutation p.G985R 0.23 deleterious(0) probably_damaging(0.979) TCGA-39-5036-01 11 43343602 43343602 A C API5 Missense_Mutation p.K153N 0.05 deleterious(0) possibly_damaging(0.827) TCGA-39-5036-01 11 46900792 46900792 C - LRP4 Frame_Shift_Del p.W963Cfs*12 0.25 TCGA-39-5036-01 11 47444133 47444133 G A PSMC3 Silent p.G292G 0.34 TCGA-39-5036-01 11 48166407 48166407 A G PTPRJ Missense_Mutation p.N919S 0.38 deleterious(0) probably_damaging(0.999) TCGA-39-5036-01 11 5322984 5322984 C T OR51B4 Missense_Mutation p.A65T 0.28 deleterious(0) probably_damaging(0.97) TCGA-39-5036-01 11 55798238 55798238 T A OR5AS1 Missense_Mutation p.L115Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-39-5036-01 11 55904999 55904999 G A OR8J3 Silent p.L66L 0.06 TCGA-39-5036-01 11 61018735 61018735 C G PGA5 Silent p.G383G 0.23 TCGA-39-5036-01 11 6898336 6898336 G A OR10A4 Missense_Mutation p.G153E 0.36 deleterious(0) possibly_damaging(0.887) TCGA-39-5036-01 11 72412727 72412727 C A ARAP1 Missense_Mutation p.G757C 0.36 deleterious(0.01) possibly_damaging(0.795) TCGA-39-5036-01 11 85431949 85431949 T C SYTL2 Missense_Mutation p.R827G 0.33 deleterious(0) probably_damaging(0.996) TCGA-39-5036-01 11 85584264 85584264 A T CCDC83 Nonsense_Mutation p.K36* 0.12 TCGA-39-5036-01 11 93523815 93523815 G A MED17 Missense_Mutation p.E165K 0.26 tolerated(0.1) benign(0.059) TCGA-39-5036-01 12 11000994 11000994 T C PRR4 Missense_Mutation p.E26G 0.08 deleterious_low_confidence(0.03) possibly_damaging(0.607) TCGA-39-5036-01 12 113824846 113824846 G - PLBD2 Frame_Shift_Del p.N465Tfs*14 0.31 TCGA-39-5036-01 12 114836499 114836499 G T TBX5 Missense_Mutation p.A130D 0.50 deleterious(0.01) possibly_damaging(0.708) TCGA-39-5036-01 12 116424272 116424272 C T MED13L Silent p.P1379P 0.13 TCGA-39-5036-01 12 22837914 22837914 A T ETNK1 3'UTR 0.40 TCGA-39-5036-01 12 2721173 2721173 A G CACNA1C Silent p.K1294K 0.22 TCGA-39-5036-01 12 30805224 30805224 C T IPO8 Splice_Site p.X692_splice 0.06 TCGA-39-5036-01 12 40707775 40707775 T C LRRK2 Missense_Mutation p.I1513T 0.10 deleterious(0) probably_damaging(0.997) TCGA-39-5036-01 12 42554536 42554536 T A YAF2 Missense_Mutation p.K157I 0.45 deleterious(0) probably_damaging(0.998) TCGA-39-5036-01 12 49436428 49436428 C - KMT2D Frame_Shift_Del p.G1928Vfs*119 0.39 TCGA-39-5036-01 12 51138612 51138612 A T DIP2B Missense_Mutation p.Y1574F 0.18 deleterious(0.01) possibly_damaging(0.866) TCGA-39-5036-01 12 51402304 51402304 G A SLC11A2 Silent p.Y75Y 0.07 TCGA-39-5036-01 12 54447770 54447770 G C HOXC4 Missense_Mutation p.E22Q 0.46 deleterious(0) probably_damaging(0.986) TCGA-39-5036-01 12 6204461 6204461 C T VWF Intron 0.21 TCGA-39-5036-01 12 70983913 70983913 C T PTPRB Silent p.R627R 0.26 TCGA-39-5036-01 12 71139710 71139710 G T PTPRR Missense_Mutation p.L299M 0.29 tolerated(0.07) possibly_damaging(0.541) TCGA-39-5036-01 12 72355476 72355476 A C TPH2 Intron 0.05 TCGA-39-5036-01 12 7894112 7894112 A G CLEC4C Missense_Mutation p.M47T 0.04 tolerated(1) benign(0.003) TCGA-39-5036-01 12 85626479 85626479 A G LRRIQ1 Missense_Mutation p.H1654R 0.44 tolerated(0.51) benign(0.059) TCGA-39-5036-01 12 94706779 94706779 A C CCDC41 Missense_Mutation p.H574Q 0.25 tolerated(0.13) possibly_damaging(0.742) TCGA-39-5036-01 13 19748040 19748040 G A TUBA3C Missense_Mutation p.S439F 0.05 deleterious_low_confidence(0.01) unknown(0) TCGA-39-5036-01 13 29608097 29608097 C G MTUS2 Missense_Mutation p.R771G 0.06 deleterious(0) probably_damaging(0.999) TCGA-39-5036-01 13 37014302 37014302 G T CCNA1 Missense_Mutation p.R360S 0.44 deleterious(0.04) possibly_damaging(0.832) TCGA-39-5036-01 13 77629779 77629779 T C MYCBP2 Missense_Mutation p.T4483A 0.29 probably_damaging(0.965) TCGA-39-5036-01 14 103371655 103371655 A G TRAF3 Missense_Mutation p.Y414C 0.27 tolerated(0.07) possibly_damaging(0.781) TCGA-39-5036-01 14 106725354 106725354 C A IGHV3-23 Missense_Mutation p.W66C 0.14 deleterious_low_confidence(0.01) benign(0.207) TCGA-39-5036-01 14 106725355 106725355 C T IGHV3-23 Nonsense_Mutation p.W66* 0.13 TCGA-39-5036-01 14 107283095 107283095 A G IGHV7-81 Silent p.G16G 0.22 TCGA-39-5036-01 14 22521153 22521153 C A TRAV21 Missense_Mutation p.D58E 0.06 tolerated(0.61) benign(0.205) TCGA-39-5036-01 14 23869498 23869498 C A MYH6 Missense_Mutation p.M516I 0.33 deleterious(0.01) benign(0.193) TCGA-39-5036-01 14 24805493 24805493 G A RIPK3 Missense_Mutation p.S482L 0.33 tolerated(0.67) benign(0.001) TCGA-39-5036-01 14 33016177 33016177 A C AKAP6 Missense_Mutation p.N773T 0.31 deleterious(0.04) possibly_damaging(0.889) TCGA-39-5036-01 14 47324237 47324237 G T MDGA2 Missense_Mutation p.T958N 0.04 deleterious(0.04) benign(0.382) TCGA-39-5036-01 14 53217453 53217453 A T STYX Missense_Mutation p.N66I 0.03 tolerated(0.08) benign(0.293) TCGA-39-5036-01 14 63483556 63483556 T A KCNH5 Missense_Mutation p.T64S 0.17 tolerated(0.16) benign(0.217) TCGA-39-5036-01 14 64488573 64488573 A C SYNE2 Splice_Site p.X1785_splice 0.21 TCGA-39-5036-01 14 76452154 76452154 G C IFT43 Missense_Mutation p.E9Q 0.22 tolerated(0.05) unknown(0) TCGA-39-5036-01 14 90459730 90459730 G T TDP1 Missense_Mutation p.A482S 0.22 tolerated(0.37) possibly_damaging(0.894) TCGA-39-5036-01 15 100871105 100871105 T C ADAMTS17 Missense_Mutation p.K202R 0.28 tolerated(0.07) benign(0.001) TCGA-39-5036-01 15 101562654 101562654 A C LRRK1 Missense_Mutation p.K640T 0.26 deleterious(0) probably_damaging(1) TCGA-39-5036-01 15 24924477 24924477 C T NPAP1 Missense_Mutation p.L1155F 0.05 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-39-5036-01 15 25966982 25966982 G A ATP10A Silent p.D395D 0.07 TCGA-39-5036-01 15 27193318 27193318 G T GABRA5 Missense_Mutation p.V443F 0.33 tolerated(0.09) probably_damaging(0.999) TCGA-39-5036-01 15 40030346 40030346 C A FSIP1 Silent p.L279L 0.28 TCGA-39-5036-01 15 43363118 43363118 T A UBR1 Silent p.S178S 0.26 TCGA-39-5036-01 15 48561893 48561893 G T SLC12A1 Silent p.V778V 0.15 TCGA-39-5036-01 15 55964742 55964742 T A PRTG Missense_Mutation p.I648F 0.20 deleterious(0) possibly_damaging(0.678) TCGA-39-5036-01 15 64915056 64915056 C G ZNF609 Missense_Mutation p.L260V 0.33 tolerated(0.31) benign(0.442) TCGA-39-5036-01 15 81598257 81598257 A G IL16 Silent p.R1143R 0.04 TCGA-39-5036-01 15 99673095 99673095 G T SYNM Silent p.G1509G 0.22 TCGA-39-5036-01 16 17235064 17235064 G A XYLT1 Silent p.D511D 0.30 TCGA-39-5036-01 16 20451694 20451694 C G ACSM5 Missense_Mutation p.T562R 0.27 deleterious(0) probably_damaging(0.999) TCGA-39-5036-01 16 24268023 24268023 G T CACNG3 5'UTR 0.21 TCGA-39-5036-01 16 24268024 24268024 G T CACNG3 5'UTR 0.21 TCGA-39-5036-01 16 73126746 73126746 C T HCCAT5 RNA 0.18 TCGA-39-5036-01 16 77369733 77369733 G T ADAMTS18 Silent p.S593S 0.29 TCGA-39-5036-01 16 77397773 77397773 G T ADAMTS18 Missense_Mutation p.L328I 0.27 deleterious(0) probably_damaging(0.996) TCGA-39-5036-01 16 79628410 79628410 C T MAF Missense_Mutation p.A387T 0.40 tolerated_low_confidence(0.16) benign(0.015) TCGA-39-5036-01 16 86565980 86565980 C T MTHFSD Silent p.P263P 0.23 TCGA-39-5036-01 16 9012908 9012908 A C USP7 Missense_Mutation p.F234V 0.05 deleterious(0) probably_damaging(0.999) TCGA-39-5036-01 17 10296178 10296178 C - MYH8 Frame_Shift_Del p.K1812Rfs*39 0.44 TCGA-39-5036-01 17 12656437 12656437 A G MYOCD Missense_Mutation p.N611S 0.05 tolerated(0.54) benign(0.003) TCGA-39-5036-01 17 26817738 26817738 C A SLC13A2 Missense_Mutation p.L179M 0.62 tolerated(0.11) benign(0.139) TCGA-39-5036-01 17 38812817 38812817 A T KRT222 Nonsense_Mutation p.L242* 0.56 TCGA-39-5036-01 17 39675158 39675158 G A KRT15 5'UTR 0.68 TCGA-39-5036-01 17 44782198 44782198 C T NSF Missense_Mutation p.S483F 0.11 deleterious(0) possibly_damaging(0.498) TCGA-39-5036-01 17 48753334 48753334 G C ABCC3 Missense_Mutation p.A984P 0.50 deleterious(0.04) probably_damaging(0.962) TCGA-39-5036-01 17 49337958 49337958 C A UTP18 Silent p.R5R 0.50 TCGA-39-5036-01 17 56435317 56435317 G A RNF43 Missense_Mutation p.S607L 0.07 tolerated_low_confidence(0.09) benign(0.002) TCGA-39-5036-01 17 71391524 71391524 G A SDK2 Missense_Mutation p.P1121L 0.18 tolerated(0.08) benign(0.08) TCGA-39-5036-01 17 73827393 73827393 C T UNC13D Silent p.V828V 0.18 TCGA-39-5036-01 17 7578500 7578501 - T TP53 Frame_Shift_Ins p.Q144Tfs*5 0.40 TCGA-39-5036-01 18 50589827 50589827 G T DCC Missense_Mutation p.V380L 0.43 tolerated(0.14) possibly_damaging(0.622) TCGA-39-5036-01 18 64235678 64235678 G T CDH19 Silent p.A155A 0.15 TCGA-39-5036-01 18 65179558 65179558 C A DSEL Missense_Mutation p.R773M 0.08 tolerated(0.1) benign(0.209) TCGA-39-5036-01 18 74620433 74620433 G A ZNF236 Missense_Mutation p.E817K 0.06 tolerated(0.06) benign(0.102) TCGA-39-5036-01 19 10602310 10602310 C A KEAP1 Missense_Mutation p.G423V 0.47 deleterious(0) probably_damaging(0.911) TCGA-39-5036-01 19 13985806 13985806 G T NANOS3 5'Flank 0.40 TCGA-39-5036-01 19 15807756 15807756 A C CYP4F12 Missense_Mutation p.K479T 0.48 deleterious(0) probably_damaging(0.949) TCGA-39-5036-01 19 31038928 31038928 A C ZNF536 Missense_Mutation p.H801P 0.46 deleterious(0) probably_damaging(0.997) TCGA-39-5036-01 19 34981323 34981323 A T WTIP Missense_Mutation p.Q237L 0.10 deleterious(0) probably_damaging(0.988) TCGA-39-5036-01 19 35176423 35176423 C G ZNF302 3'UTR 0.18 TCGA-39-5036-01 19 35800780 35800780 C A MAG Missense_Mutation p.A412D 0.15 deleterious(0.01) possibly_damaging(0.883) TCGA-39-5036-01 19 35940862 35940862 C A FFAR2 Nonsense_Mutation p.C82* 0.10 TCGA-39-5036-01 19 38160053 38160053 C T ZNF781 3'UTR 0.44 TCGA-39-5036-01 19 43697455 43697455 C G PSG4 3'UTR 0.04 TCGA-39-5036-01 19 48389461 48389461 G C SULT2A1 Missense_Mutation p.F18L 0.46 tolerated(0.08) benign(0.003) TCGA-39-5036-01 19 52327500 52327500 A G FPR3 Missense_Mutation p.I167V 0.29 tolerated(1) benign(0.001) TCGA-39-5036-01 19 53007938 53007938 G C ZNF578 Missense_Mutation p.E32Q 0.10 deleterious(0) benign(0.33) TCGA-39-5036-01 19 53383784 53383784 G A ZNF320 3'UTR 0.43 TCGA-39-5036-01 19 55085379 55085379 G C LILRA2 Missense_Mutation p.G12R 0.44 deleterious(0.03) benign(0.176) TCGA-39-5036-01 19 5598891 5598891 G A SAFB2 Silent p.S565S 0.08 TCGA-39-5036-01 19 5867525 5867525 G T FUT5 Missense_Mutation p.P71H 0.11 deleterious(0.01) possibly_damaging(0.881) TCGA-39-5036-01 19 7831639 7831639 C G CLEC4M Silent p.T294T 0.30 TCGA-39-5036-01 19 9003659 9003659 G T MUC16 Silent p.L13327L 0.38 TCGA-39-5036-01 1 104120169 104120169 A T AMY2B Missense_Mutation p.I387F 0.28 tolerated(0.28) possibly_damaging(0.725) TCGA-39-5036-01 1 109143220 109143220 G A FAM102B Missense_Mutation p.R57K 0.10 tolerated(0.63) benign(0.003) TCGA-39-5036-01 1 114308799 114308799 T G RSBN1 Silent p.R738R 0.05 TCGA-39-5036-01 1 117150804 117150804 T C IGSF3 Missense_Mutation p.M328V 0.27 tolerated(0.63) benign(0.001) TCGA-39-5036-01 1 118539335 118539335 A G SPAG17 Missense_Mutation p.L1603S 0.25 deleterious(0.02) benign(0.168) TCGA-39-5036-01 1 12027126 12027126 A T PLOD1 Missense_Mutation p.Q578L 0.31 deleterious(0.02) benign(0.008) TCGA-39-5036-01 1 149399197 149399197 G C HIST2H3PS2 3'Flank 0.17 TCGA-39-5036-01 1 152681748 152681748 A G LCE4A Missense_Mutation p.H66R 0.29 tolerated_low_confidence(0.37) unknown(0) TCGA-39-5036-01 1 157667548 157667548 C A FCRL3 Missense_Mutation p.V154F 0.23 deleterious(0.01) probably_damaging(0.948) TCGA-39-5036-01 1 159283599 159283599 G T OR10J3 Missense_Mutation p.P284H 0.25 deleterious(0) probably_damaging(0.999) TCGA-39-5036-01 1 160209596 160209596 C A DCAF8 Missense_Mutation p.G205V 0.37 deleterious(0) probably_damaging(1) TCGA-39-5036-01 1 170928624 170928624 G T MROH9 Missense_Mutation p.Q58H 0.05 deleterious(0.02) probably_damaging(1) TCGA-39-5036-01 1 176903441 176903441 T C ASTN1 Missense_Mutation p.T840A 0.17 deleterious(0.02) benign(0.343) TCGA-39-5036-01 1 185704138 185704138 G A HMCN1 Missense_Mutation p.R76K 0.11 probably_damaging(0.92) TCGA-39-5036-01 1 190067614 190067614 A G BRINP3 Missense_Mutation p.L612S 0.30 deleterious(0) probably_damaging(0.997) TCGA-39-5036-01 1 190068100 190068100 A T BRINP3 Missense_Mutation p.L450Q 0.34 deleterious(0.01) benign(0.006) TCGA-39-5036-01 1 220955184 220955184 T G MARC2 Missense_Mutation p.Y317D 0.03 deleterious(0.01) probably_damaging(0.942) TCGA-39-5036-01 1 226496852 226496852 C A LIN9 Missense_Mutation p.G13C 0.22 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-39-5036-01 1 235345368 235345368 G T ARID4B Missense_Mutation p.P956T 0.04 tolerated_low_confidence(0.08) probably_damaging(0.998) TCGA-39-5036-01 1 236998969 236998969 C T MTR Silent p.S437S 0.12 TCGA-39-5036-01 1 237947865 237947865 T G RYR2 Missense_Mutation p.S4285A 0.37 benign(0.041) TCGA-39-5036-01 1 242511451 242511451 C A PLD5 Missense_Mutation p.D95Y 0.21 deleterious(0) probably_damaging(0.98) TCGA-39-5036-01 1 25628018 25628018 C G RHD Silent p.L214L 0.03 TCGA-39-5036-01 1 70339171 70339171 C T LRRC7 Intron 0.18 TCGA-39-5036-01 1 71512400 71512400 G T PTGER3 Silent p.I287I 0.25 TCGA-39-5036-01 1 74954877 74954877 G T TNNI3K Missense_Mutation p.R810I 0.23 deleterious(0) possibly_damaging(0.638) TCGA-39-5036-01 1 75078454 75078454 G T C1orf173 Missense_Mutation p.P347H 0.27 deleterious(0) probably_damaging(1) TCGA-39-5036-01 1 76343990 76343990 A G MSH4 Silent p.V509V 0.10 TCGA-39-5036-01 1 76349469 76349469 A T MSH4 Missense_Mutation p.L690F 0.26 deleterious(0) benign(0.293) TCGA-39-5036-01 1 7995185 7995185 C T TNFRSF9 Silent p.K144K 0.23 TCGA-39-5036-01 1 84880477 84880477 T C DNASE2B Missense_Mutation p.F338L 0.34 tolerated(0.43) benign(0.267) TCGA-39-5036-01 1 91182612 91182612 G A BARHL2 Silent p.A47A 0.37 TCGA-39-5036-01 1 93202101 93202101 C A EVI5 Missense_Mutation p.M45I 0.28 tolerated(0.06) benign(0.34) TCGA-39-5036-01 20 1435635 1435635 G C NSFL1C Missense_Mutation p.P143A 0.24 tolerated(1) benign(0.132) TCGA-39-5036-01 20 24988512 24988512 G C ACSS1 Missense_Mutation p.I652M 0.10 deleterious(0) possibly_damaging(0.56) TCGA-39-5036-01 20 35724343 35724343 C T RBL1 Missense_Mutation p.P52L 0.38 possibly_damaging(0.856) TCGA-39-5036-01 20 36870243 36870243 G T KIAA1755 Missense_Mutation p.P97H 0.08 deleterious(0) benign(0.335) TCGA-39-5036-01 20 61537362 61537362 T C DIDO1 Missense_Mutation p.S489G 0.20 benign(0.006) TCGA-39-5036-01 20 62165629 62165629 C G PTK6 Missense_Mutation p.R131P 0.13 deleterious(0.02) possibly_damaging(0.866) TCGA-39-5036-01 20 9371211 9371212 - G PLCB4 Frame_Shift_Ins p.E425Gfs*14 0.14 TCGA-39-5036-01 21 38311131 38311131 C T HLCS Splice_Site p.X18_splice 0.41 TCGA-39-5036-01 22 24620982 24620982 G A GGT5 Silent p.Y533Y 0.11 TCGA-39-5036-01 22 24621612 24621612 G A GGT5 Missense_Mutation p.A413V 0.08 deleterious(0.01) probably_damaging(0.964) TCGA-39-5036-01 22 25145726 25145726 T A PIWIL3 Nonsense_Mutation p.K384* 0.12 TCGA-39-5036-01 22 26164833 26164833 A T MYO18B Missense_Mutation p.K317M 0.09 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-39-5036-01 22 26995432 26995432 G C CRYBB1 3'UTR 0.24 TCGA-39-5036-01 22 32229905 32229905 G T DEPDC5 Missense_Mutation p.M703I 0.30 tolerated(0.4) benign(0) TCGA-39-5036-01 22 32831696 32831696 C T BPIFC Missense_Mutation p.E307K 0.07 tolerated(1) benign(0.001) TCGA-39-5036-01 22 36587190 36587190 C A APOL4 Missense_Mutation p.W329L 0.19 tolerated(0.4) benign(0.122) TCGA-39-5036-01 2 11053971 11053971 C T KCNF1 Silent p.S473S 0.13 TCGA-39-5036-01 2 141707850 141707850 G T LRP1B Missense_Mutation p.D1030E 0.21 probably_damaging(0.956) TCGA-39-5036-01 2 149243368 149243368 C A MBD5 Nonsense_Mutation p.S968* 0.12 TCGA-39-5036-01 2 165404254 165404254 C G GRB14 Missense_Mutation p.V133L 0.16 tolerated(0.78) benign(0.042) TCGA-39-5036-01 2 171238525 171238525 G A MYO3B Splice_Site p.X324_splice 0.15 TCGA-39-5036-01 2 179259114 179259114 G T OSBPL6 Missense_Mutation p.R908I 0.22 deleterious(0) probably_damaging(0.991) TCGA-39-5036-01 2 179431458 179431458 A G TTN Silent p.A26467A 0.25 TCGA-39-5036-01 2 182542328 182542328 A T NEUROD1 3'UTR 0.24 TCGA-39-5036-01 2 183866998 183866998 C T NCKAP1 Splice_Site p.X130_splice 0.09 TCGA-39-5036-01 2 187455140 187455140 A G ITGAV Silent p.L25L 0.16 TCGA-39-5036-01 2 202334695 202334695 C T STRADB Missense_Mutation p.S38F 0.12 deleterious(0.03) benign(0.005) TCGA-39-5036-01 2 227779053 227779053 G T RHBDD1 Missense_Mutation p.S281I 0.59 deleterious(0) probably_damaging(1) TCGA-39-5036-01 2 231077723 231077723 C T SP110 Nonsense_Mutation p.W112* 0.10 TCGA-39-5036-01 2 241531369 241531369 C A CAPN10 Missense_Mutation p.H164N 0.46 tolerated(0.1) benign(0.395) TCGA-39-5036-01 2 27303605 27303605 G A EMILIN1 Missense_Mutation p.R99H 0.10 probably_damaging(0.998) TCGA-39-5036-01 2 44999172 44999172 C T CAMKMT Intron 0.23 TCGA-39-5036-01 2 56420240 56420240 C A CCDC85A Missense_Mutation p.P302H 0.08 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-39-5036-01 2 71305540 71305540 C G NAGK Missense_Mutation p.L359V 0.24 tolerated(0.25) benign(0.017) TCGA-39-5036-01 2 79312271 79312271 A G REG1B 3'UTR 0.33 TCGA-39-5036-01 2 79385540 79385540 C A REG3A Missense_Mutation p.G82V 0.30 tolerated(0.08) benign(0.021) TCGA-39-5036-01 2 97862451 97862451 A G ANKRD36 Splice_Site p.X861_splice 0.38 TCGA-39-5036-01 3 102157338 102157338 C A ZPLD1 Missense_Mutation p.Q19K 0.33 tolerated_low_confidence(0.19) benign(0.02) TCGA-39-5036-01 3 105290790 105290790 A T ALCAM 3'UTR 0.20 TCGA-39-5036-01 3 107938410 107938410 A G IFT57 Silent p.F74F 0.17 TCGA-39-5036-01 3 112727209 112727209 C G C3orf17 Silent p.V348V 0.19 TCGA-39-5036-01 3 113138979 113138979 A G WDR52 Missense_Mutation p.L152P 0.25 deleterious(0) probably_damaging(0.93) TCGA-39-5036-01 3 119327761 119327761 C A PLA1A Missense_Mutation p.S140R 0.30 deleterious(0) possibly_damaging(0.868) TCGA-39-5036-01 3 128875486 128875486 C T ISY1 Silent p.Q59Q 0.19 TCGA-39-5036-01 3 148562525 148562525 C A CPB1 Missense_Mutation p.P250H 0.20 deleterious(0.01) probably_damaging(0.995) TCGA-39-5036-01 3 164735594 164735594 C T SI Missense_Mutation p.M1196I 0.05 tolerated(0.3) benign(0.028) TCGA-39-5036-01 3 16636046 16636046 T A DAZL Silent p.V225V 0.46 TCGA-39-5036-01 3 176756174 176756174 C G TBL1XR1 Missense_Mutation p.C325S 0.13 tolerated(0.25) possibly_damaging(0.816) TCGA-39-5036-01 3 178560680 178560680 G A KCNMB2 Silent p.Q221Q 0.08 TCGA-39-5036-01 3 19436644 19436644 C T KCNH8 Missense_Mutation p.R340C 0.20 deleterious(0) probably_damaging(1) TCGA-39-5036-01 3 196626831 196626831 G T SENP5 Silent p.R552R 0.20 TCGA-39-5036-01 3 27759046 27759046 G T EOMES Missense_Mutation p.P526T 0.50 tolerated(0.13) benign(0.13) TCGA-39-5036-01 3 37366072 37366072 C T GOLGA4 Nonsense_Mutation p.Q921* 0.56 TCGA-39-5036-01 3 38592636 38592636 C T SCN5A Missense_Mutation p.G1743R 0.47 deleterious(0) probably_damaging(1) TCGA-39-5036-01 3 46901133 46901133 T C MYL3 Missense_Mutation p.N105D 0.30 tolerated(0.05) benign(0.119) TCGA-39-5036-01 3 49002404 49002404 C G ARIH2 Missense_Mutation p.P126A 0.44 tolerated(0.23) benign(0) TCGA-39-5036-01 3 73108204 73108204 C T PPP4R2 Nonsense_Mutation p.Q102* 0.50 TCGA-39-5036-01 3 75478291 75478291 A T FAM86DP RNA 0.09 TCGA-39-5036-01 3 9788857 9788857 C T BRPF1 Silent p.L1163L 0.08 TCGA-39-5036-01 4 114278132 114278132 T A ANK2 Silent p.A2786A 0.62 TCGA-39-5036-01 4 122833214 122833215 AA T TRPC3 Frame_Shift_Del p.F459Mfs*2 0.17 TCGA-39-5036-01 4 147561769 147561769 C T POU4F2 Missense_Mutation p.R347C 0.04 deleterious(0) possibly_damaging(0.787) TCGA-39-5036-01 4 155510606 155510606 A T FGA Missense_Mutation p.C55S 0.45 deleterious(0) possibly_damaging(0.45) TCGA-39-5036-01 4 162307621 162307621 G T FSTL5 Intron 0.32 TCGA-39-5036-01 4 177649017 177649017 C A VEGFC Missense_Mutation p.C156F 0.43 deleterious(0) probably_damaging(1) TCGA-39-5036-01 4 183675813 183675813 G T TENM3 Missense_Mutation p.Q1431H 0.12 deleterious(0.02) benign(0.099) TCGA-39-5036-01 4 26490935 26490935 A G CCKAR Missense_Mutation p.M95T 0.19 deleterious(0) probably_damaging(0.967) TCGA-39-5036-01 4 2749604 2749604 G C TNIP2 Silent p.P115P 0.27 TCGA-39-5036-01 4 37962435 37962435 G T PTTG2 Missense_Mutation p.S127I 0.22 deleterious(0) probably_damaging(0.94) TCGA-39-5036-01 4 41016210 41016210 G A APBB2 Silent p.I75I 0.35 TCGA-39-5036-01 4 46060551 46060551 A G GABRG1 Silent p.F238F 0.23 TCGA-39-5036-01 4 56448400 56448400 G T PDCL2 Missense_Mutation p.P4H 0.21 deleterious(0) probably_damaging(0.999) TCGA-39-5036-01 4 56448401 56448401 G T PDCL2 Missense_Mutation p.P4T 0.21 deleterious(0) probably_damaging(0.999) TCGA-39-5036-01 4 66356236 66356236 G T EPHA5 Missense_Mutation p.L421M 0.48 deleterious(0) probably_damaging(0.996) TCGA-39-5036-01 4 66356237 66356237 G T EPHA5 Silent p.G420G 0.48 TCGA-39-5036-01 4 85771053 85771053 A G WDFY3 Splice_Site p.X102_splice 0.04 TCGA-39-5036-01 4 8589092 8589092 G T GPR78 3'UTR 0.15 TCGA-39-5036-01 5 101834440 101834440 C T SLCO6A1 Missense_Mutation p.G37R 0.39 tolerated(0.4) benign(0.018) TCGA-39-5036-01 5 122708355 122708355 T G CEP120 Missense_Mutation p.T824P 0.38 deleterious(0.01) benign(0.397) TCGA-39-5036-01 5 128844873 128844873 C T ADAMTS19 Missense_Mutation p.S278F 0.14 deleterious(0.04) possibly_damaging(0.883) TCGA-39-5036-01 5 140257180 140257180 C A PCDHA12 Missense_Mutation p.S708Y 0.47 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-39-5036-01 5 140553393 140553393 G A PCDHB7 Missense_Mutation p.G326E 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.602) TCGA-39-5036-01 5 140723680 140723680 G C PCDHGA3 Missense_Mutation p.G27A 0.47 tolerated_low_confidence(0.12) possibly_damaging(0.467) TCGA-39-5036-01 5 140802625 140802625 A T PCDHGA11 Nonsense_Mutation p.K611* 0.44 TCGA-39-5036-01 5 1409227 1409227 A T SLC6A3 Missense_Mutation p.V471D 0.09 deleterious(0) probably_damaging(0.936) TCGA-39-5036-01 5 159680516 159680516 C T CCNJL Missense_Mutation p.V393M 0.07 tolerated(0.35) benign(0.018) TCGA-39-5036-01 5 169081483 169081483 G T DOCK2 Silent p.T40T 0.53 TCGA-39-5036-01 5 31511217 31511217 C A DROSHA Missense_Mutation p.G453W 0.46 deleterious(0.01) probably_damaging(0.912) TCGA-39-5036-01 5 32000253 32000253 G T PDZD2 Missense_Mutation p.R377M 0.31 deleterious(0) probably_damaging(0.933) TCGA-39-5036-01 5 32059445 32059445 G C PDZD2 Missense_Mutation p.K767N 0.06 deleterious(0) probably_damaging(1) TCGA-39-5036-01 5 40834286 40834286 A G RPL37 Missense_Mutation p.F74S 0.04 deleterious(0.01) possibly_damaging(0.796) TCGA-39-5036-01 5 41199881 41199881 C G C6 Missense_Mutation p.R145P 0.25 deleterious(0.04) possibly_damaging(0.858) TCGA-39-5036-01 5 61778973 61778973 A G IPO11 Missense_Mutation p.I332V 0.09 tolerated(0.06) possibly_damaging(0.599) TCGA-39-5036-01 5 61802105 61802105 T G IPO11 Missense_Mutation p.L608R 0.12 deleterious(0) probably_damaging(1) TCGA-39-5036-01 5 76129526 76129526 G A F2RL1 Missense_Mutation p.R365H 0.05 deleterious(0) probably_damaging(0.999) TCGA-39-5036-01 5 7832066 7832066 T A C5orf49 Missense_Mutation p.N114I 0.03 tolerated(0.42) benign(0.2) TCGA-39-5036-01 6 102483400 102483400 G T GRIK2 Missense_Mutation p.G757V 0.31 deleterious(0) probably_damaging(1) TCGA-39-5036-01 6 110551303 110551303 G T CDC40 Missense_Mutation p.G570V 0.40 deleterious(0) probably_damaging(0.999) TCGA-39-5036-01 6 112430732 112430732 G A LAMA4 Missense_Mutation p.R1794C 0.36 deleterious(0) probably_damaging(1) TCGA-39-5036-01 6 117709004 117709004 T A ROS1 Silent p.A651A 0.40 TCGA-39-5036-01 6 127476525 127476525 A T RSPO3 Silent p.P192P 0.23 TCGA-39-5036-01 6 132891742 132891742 G A TAAR6 Silent p.V94V 0.25 TCGA-39-5036-01 6 135611618 135611618 T C AHI1 Missense_Mutation p.I1177M 0.41 tolerated_low_confidence(0.11) benign(0.001) TCGA-39-5036-01 6 158538849 158538849 C T SERAC1 Nonsense_Mutation p.W438* 0.07 TCGA-39-5036-01 6 160205780 160205781 - T TCP1 Frame_Shift_Ins p.N196Kfs*43 0.16 TCGA-39-5036-01 6 166572067 166572067 G T T Silent p.P348P 0.38 TCGA-39-5036-01 6 166572068 166572068 G A T Missense_Mutation p.P348L 0.31 deleterious(0) possibly_damaging(0.721) TCGA-39-5036-01 6 25851025 25851025 A T SLC17A3 Missense_Mutation p.S265T 0.45 tolerated(0.46) benign(0.034) TCGA-39-5036-01 6 2623807 2623807 C A C6orf195 Missense_Mutation p.A84S 0.51 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-39-5036-01 6 27806769 27806769 C T HIST1H2BN Silent p.H110H 0.60 TCGA-39-5036-01 6 30514615 30514615 T A GNL1 Splice_Site p.X481_splice 0.52 TCGA-39-5036-01 6 31948524 31948524 G A STK19 Missense_Mutation p.R336Q 0.05 deleterious(0.04) benign(0.255) TCGA-39-5036-01 6 37452873 37452873 T C CCDC167 Intron 0.50 TCGA-39-5036-01 6 49660410 49660410 C A CRISP2 3'UTR 0.08 TCGA-39-5036-01 6 49668381 49668381 C A CRISP2 Missense_Mutation p.M61I 0.12 deleterious(0) probably_damaging(0.993) TCGA-39-5036-01 6 51586646 51586646 C G PKHD1 Intron 0.19 TCGA-39-5036-01 6 55625317 55625317 C T BMP5 Missense_Mutation p.E348K 0.39 tolerated(0.17) benign(0.027) TCGA-39-5036-01 6 7583049 7583049 C T DSP Missense_Mutation p.R1852C 0.09 possibly_damaging(0.77) TCGA-39-5036-01 6 97679345 97679345 T C MMS22L Missense_Mutation p.M496V 0.44 tolerated(0.39) benign(0.054) TCGA-39-5036-01 7 100187468 100187468 G C FBXO24 Intron 0.25 TCGA-39-5036-01 7 100693916 100693916 G T MUC17 Missense_Mutation p.D4292Y 0.26 unknown(0) TCGA-39-5036-01 7 112413056 112413056 C G TMEM168 Missense_Mutation p.L442F 0.04 tolerated(0.07) possibly_damaging(0.74) TCGA-39-5036-01 7 114299649 114299649 G A FOXP2 Missense_Mutation p.R548K 0.22 tolerated(0.6) unknown(0) TCGA-39-5036-01 7 141758051 141758051 C T MGAM Silent p.L1248L 0.05 TCGA-39-5036-01 7 142180928 142180928 C A TRBV6-5 Missense_Mutation p.C8F 0.48 tolerated(0.24) possibly_damaging(0.768) TCGA-39-5036-01 7 143573132 143573132 C T FAM115A Silent p.T190T 0.14 TCGA-39-5036-01 7 151874635 151874635 G A KMT2C Nonsense_Mutation p.Q2635* 0.36 TCGA-39-5036-01 7 1526289 1526289 T A INTS1 Missense_Mutation p.Q983L 0.40 deleterious(0) benign(0.118) TCGA-39-5036-01 7 154672636 154672636 T A DPP6 Missense_Mutation p.V706E 0.13 deleterious(0) probably_damaging(0.994) TCGA-39-5036-01 7 1587401 1587401 G C TMEM184A Missense_Mutation p.A330G 0.13 tolerated(0.06) benign(0.045) TCGA-39-5036-01 7 30538534 30538534 C G GGCT Missense_Mutation p.G103A 0.47 deleterious(0) possibly_damaging(0.768) TCGA-39-5036-01 7 38433815 38433815 C G AMPH Splice_Site p.X467_splice 0.49 TCGA-39-5036-01 7 45632493 45632493 G A ADCY1 Missense_Mutation p.E259K 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-39-5036-01 7 45725678 45725678 C G ADCY1 Missense_Mutation p.L731V 0.13 tolerated(0.33) benign(0.196) TCGA-39-5036-01 7 53103760 53103760 G C POM121L12 Silent p.R132R 0.10 TCGA-39-5036-01 7 73119406 73119413 CAAAACCC - STX1A Intron 0.12 TCGA-39-5036-01 7 73474266 73474266 G A ELN Missense_Mutation p.V489I 0.11 unknown(0) TCGA-39-5036-01 7 81579668 81579668 G C CACNA2D1 3'UTR 0.06 TCGA-39-5036-01 7 83610772 83610772 G T SEMA3A Missense_Mutation p.T506K 0.14 tolerated(0.64) benign(0.005) TCGA-39-5036-01 7 86991136 86991136 C T CROT Missense_Mutation p.T200I 0.07 deleterious(0.05) benign(0.385) TCGA-39-5036-01 7 96650095 96650095 C A DLX5 Missense_Mutation p.G275C 0.24 deleterious(0.02) possibly_damaging(0.766) TCGA-39-5036-01 8 101014510 101014514 TAGAT - RGS22 Frame_Shift_Del p.K902Nfs*4 0.30 TCGA-39-5036-01 8 10464570 10464570 T A RP1L1 Missense_Mutation p.E2346D 0.22 unknown(0) TCGA-39-5036-01 8 113395805 113395805 T A CSMD3 Missense_Mutation p.S2008C 0.35 deleterious(0) probably_damaging(0.984) TCGA-39-5036-01 8 120429198 120429198 G C NOV Missense_Mutation p.G100A 0.26 deleterious(0) probably_damaging(0.97) TCGA-39-5036-01 8 120756528 120756528 C A TAF2 Missense_Mutation p.G1072W 0.19 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-39-5036-01 8 131136311 131136311 T C ASAP1 Missense_Mutation p.M519V 0.38 tolerated(0.14) possibly_damaging(0.604) TCGA-39-5036-01 8 28608235 28608235 C T EXTL3 Missense_Mutation p.S871F 0.28 deleterious(0) probably_damaging(0.996) TCGA-39-5036-01 8 29207707 29207707 C T DUSP4 Missense_Mutation p.G30D 0.31 tolerated_low_confidence(0.56) probably_damaging(0.931) TCGA-39-5036-01 8 30701206 30701206 T G TEX15 Missense_Mutation p.E1776D 0.47 tolerated(0.09) possibly_damaging(0.6) TCGA-39-5036-01 8 37699818 37699818 T A GPR124 Missense_Mutation p.V1321E 0.21 tolerated(1) benign(0) TCGA-39-5036-01 8 57078946 57078946 A T PLAG1 Silent p.V453V 0.11 TCGA-39-5036-01 8 70541814 70541814 G T SULF1 Missense_Mutation p.K728N 0.25 tolerated(0.1) possibly_damaging(0.852) TCGA-39-5036-01 8 72951117 72951117 C T TRPA1 Missense_Mutation p.E760K 0.22 tolerated(0.3) benign(0.029) TCGA-39-5036-01 8 89209517 89209517 C A MMP16 Missense_Mutation p.G51C 0.22 deleterious(0) probably_damaging(1) TCGA-39-5036-01 8 97269295 97269295 C A MTERFD1 Nonsense_Mutation p.E128* 0.41 TCGA-39-5036-01 8 98787974 98787974 C T LAPTM4B Missense_Mutation p.R4W 0.16 deleterious_low_confidence(0) benign(0.046) TCGA-39-5036-01 9 104317101 104317101 G A RNF20 Silent p.Q715Q 0.28 TCGA-39-5036-01 9 2654019 2654019 G T VLDLR 3'UTR 0.50 TCGA-39-5036-01 X 101095855 101095855 T A NXF5 Missense_Mutation p.N165Y 0.58 deleterious(0.03) probably_damaging(0.997) TCGA-39-5036-01 X 101970974 101970974 G C GPRASP2 Missense_Mutation p.A393P 0.06 deleterious(0.02) possibly_damaging(0.772) TCGA-39-5036-01 X 122532572 122532572 G A GRIA3 Missense_Mutation p.R333Q 0.13 deleterious(0.03) benign(0.057) TCGA-39-5036-01 X 124097425 124097425 G A TENM1 Nonsense_Mutation p.Q60* 0.60 TCGA-39-5036-01 X 132160305 132160305 G C USP26 Missense_Mutation p.F648L 0.11 tolerated(0.61) benign(0.004) TCGA-39-5036-01 X 135429362 135429362 C A GPR112 Missense_Mutation p.S1166Y 0.72 deleterious(0) probably_damaging(0.921) TCGA-39-5036-01 X 139047576 139047576 G C CXorf66 Missense_Mutation p.S27C 0.13 tolerated(0.06) probably_damaging(0.938) TCGA-39-5036-01 X 153669525 153669525 G A GDI1 Missense_Mutation p.V268M 0.13 deleterious(0) probably_damaging(0.968) TCGA-39-5036-01 X 3238837 3238837 G T MXRA5 Missense_Mutation p.S1630Y 0.68 tolerated(0.17) benign(0.002) TCGA-39-5036-01 X 41782255 41782255 T C CASK 5'UTR 0.68 TCGA-39-5036-01 X 65423283 65423283 C A HEPH Missense_Mutation p.P773T 0.53 tolerated(0.41) benign(0.044) TCGA-39-5036-01 X 70598702 70598702 G A TAF1 Missense_Mutation p.G414D 0.63 tolerated(0.47) benign(0.002) TCGA-39-5036-01 X 72433991 72433991 A T NAP1L2 Nonsense_Mutation p.L113* 0.68 TCGA-39-5036-01 X 73072079 73072079 G A XIST RNA 0.27 TCGA-39-5036-01 X 75004382 75004382 C G MAGEE2 Missense_Mutation p.A169P 0.11 tolerated(0.23) possibly_damaging(0.583) TCGA-39-5036-01 X 83724452 83724452 G C HDX Missense_Mutation p.S93R 0.08 deleterious(0.01) benign(0.005) TCGA-39-5037-01 10 105172873 105172873 G A PDCD11 Missense_Mutation p.V327M 0.11 deleterious(0.04) probably_damaging(0.927) TCGA-39-5037-01 10 105762780 105762780 A T SLK Missense_Mutation p.K615I 0.19 tolerated(0.16) benign(0.003) TCGA-39-5037-01 10 116602761 116602761 G T FAM160B1 Missense_Mutation p.D198Y 0.10 deleterious(0) benign(0.398) TCGA-39-5037-01 10 127464382 127464382 G A MMP21 Silent p.A3A 0.18 TCGA-39-5037-01 10 127529443 127529443 C A DHX32 Missense_Mutation p.D556Y 0.49 deleterious(0.02) benign(0.004) TCGA-39-5037-01 10 16796963 16796963 G A RSU1 Nonsense_Mutation p.R103* 0.11 TCGA-39-5037-01 10 16960671 16960671 C A CUBN Missense_Mutation p.R2317L 0.11 deleterious(0.05) possibly_damaging(0.705) TCGA-39-5037-01 10 18292099 18292099 G T SLC39A12 Splice_Site p.X587_splice 0.17 TCGA-39-5037-01 10 27702593 27702593 C A PTCHD3 Missense_Mutation p.R196L 0.45 tolerated(0.72) benign(0.01) TCGA-39-5037-01 10 27702888 27702888 C A PTCHD3 Nonsense_Mutation p.E98* 0.43 TCGA-39-5037-01 10 50532472 50532472 G T C10orf71 Missense_Mutation p.A628S 0.31 tolerated(1) benign(0.003) TCGA-39-5037-01 10 50678601 50678601 T C ERCC6 Silent p.T1135T 0.42 TCGA-39-5037-01 10 61834414 61834414 C T ANK3 Silent p.Q2075Q 0.16 TCGA-39-5037-01 10 75113471 75113471 G A TTC18 Silent p.T31T 0.30 TCGA-39-5037-01 10 96798718 96798718 A G CYP2C8 Silent p.P409P 0.41 TCGA-39-5037-01 11 107422636 107422636 G C ALKBH8 Missense_Mutation p.L200V 0.54 tolerated(0.06) possibly_damaging(0.795) TCGA-39-5037-01 11 113281606 113281606 G T DRD2 Missense_Mutation p.T392K 0.10 deleterious(0) possibly_damaging(0.672) TCGA-39-5037-01 11 121016448 121016448 G A TECTA Missense_Mutation p.R1243H 0.17 tolerated(0.12) possibly_damaging(0.79) TCGA-39-5037-01 11 123894283 123894283 T A OR10G9 Nonsense_Mutation p.C188* 0.09 TCGA-39-5037-01 11 124524593 124524593 C T SIAE Missense_Mutation p.D168N 0.15 deleterious(0.02) probably_damaging(0.967) TCGA-39-5037-01 11 129772364 129772364 T A PRDM10 Missense_Mutation p.Q1109H 0.22 deleterious_low_confidence(0) possibly_damaging(0.742) TCGA-39-5037-01 11 13391207 13391207 G A ARNTL Missense_Mutation p.R238Q 0.16 deleterious(0.03) possibly_damaging(0.897) TCGA-39-5037-01 11 1944086 1944086 G T TNNT3 Splice_Site 0.15 TCGA-39-5037-01 11 20625906 20625906 G T SLC6A5 Silent p.V205V 0.08 TCGA-39-5037-01 11 22261201 22261201 C T ANO5 Silent p.F283F 0.12 TCGA-39-5037-01 11 44286452 44286452 G T ALX4 Silent p.L396L 0.44 TCGA-39-5037-01 11 55371517 55371517 A C OR4C11 Missense_Mutation p.F111L 0.07 tolerated(0.26) benign(0.012) TCGA-39-5037-01 11 55735200 55735200 G C OR10AG1 Missense_Mutation p.T247S 0.46 tolerated(0.57) benign(0.019) TCGA-39-5037-01 11 55904834 55904834 C A OR8J3 Missense_Mutation p.D121Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-39-5037-01 11 56086669 56086669 T A OR8K3 Missense_Mutation p.V296E 0.50 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-39-5037-01 11 56127868 56127868 C A OR8J1 Missense_Mutation p.T49N 0.48 deleterious(0) possibly_damaging(0.732) TCGA-39-5037-01 11 62298396 62298396 C T AHNAK Missense_Mutation p.E1165K 0.50 benign(0.388) TCGA-39-5037-01 11 64898161 64898161 G A SYVN1 Missense_Mutation p.P359L 0.39 tolerated(0.25) unknown(0) TCGA-39-5037-01 11 65634506 65634506 C T EFEMP2 Silent p.V405V 0.68 TCGA-39-5037-01 11 68518014 68518014 C A MTL5 Missense_Mutation p.V39L 0.56 tolerated_low_confidence(0.05) benign(0.088) TCGA-39-5037-01 11 68685319 68685319 C G IGHMBP2 Missense_Mutation p.T343S 0.68 tolerated(0.67) benign(0.023) TCGA-39-5037-01 11 89883651 89883651 G C NAALAD2 Missense_Mutation p.G162A 0.63 tolerated(0.16) possibly_damaging(0.502) TCGA-39-5037-01 11 99944959 99944959 C - CNTN5 Frame_Shift_Del p.Q506Kfs*23 0.23 TCGA-39-5037-01 12 100706354 100706354 G C SCYL2 Missense_Mutation p.V259L 0.52 tolerated(0.36) benign(0.028) TCGA-39-5037-01 12 11508439 11508439 G T PRB1 Missense_Mutation p.Q17K 0.45 deleterious_low_confidence(0.04) unknown(0) TCGA-39-5037-01 12 123276650 123276650 G A CCDC62 Missense_Mutation p.D252N 0.05 tolerated(0.4) probably_damaging(0.999) TCGA-39-5037-01 12 129566322 129566322 A T TMEM132D Silent p.L635L 0.14 TCGA-39-5037-01 12 130827214 130827214 C T PIWIL1 Silent p.A26A 0.47 TCGA-39-5037-01 12 132635872 132635872 C T NOC4L Silent p.R344R 0.03 TCGA-39-5037-01 12 26864171 26864171 C T ITPR2 Missense_Mutation p.A296T 0.08 tolerated(0.09) probably_damaging(0.999) TCGA-39-5037-01 12 41946553 41946553 C A PDZRN4 Missense_Mutation p.S433R 0.50 deleterious(0) probably_damaging(1) TCGA-39-5037-01 12 50190450 50190450 T C NCKAP5L Missense_Mutation p.E398G 0.58 tolerated_low_confidence(0.22) benign(0.011) TCGA-39-5037-01 12 53071127 53071127 A G KRT1 Silent p.A367A 0.09 TCGA-39-5037-01 12 56079052 56079052 C T ITGA7 Silent p.A1072A 0.09 TCGA-39-5037-01 12 78400498 78400498 C A NAV3 Silent p.R394R 0.52 TCGA-39-5037-01 12 9262611 9262611 G A A2M Silent p.I175I 0.49 TCGA-39-5037-01 12 993955 993955 A G WNK1 Missense_Mutation p.T1329A 0.56 tolerated(0.29) benign(0.015) TCGA-39-5037-01 13 20012295 20012295 T C TPTE2 Splice_Site p.X325_splice 0.60 TCGA-39-5037-01 13 20412970 20412970 T C ZMYM5 Missense_Mutation p.K248E 0.14 deleterious(0) possibly_damaging(0.486) TCGA-39-5037-01 13 25263440 25263440 C T ATP12A Missense_Mutation p.T158M 0.10 deleterious(0) probably_damaging(1) TCGA-39-5037-01 14 102792675 102792675 G A ZNF839 Silent p.P214P 0.50 TCGA-39-5037-01 14 105209529 105209529 G T ADSSL1 Splice_Site p.X401_splice 0.54 TCGA-39-5037-01 14 20711878 20711878 G T OR11H4 Missense_Mutation p.A310S 0.11 deleterious(0.01) probably_damaging(0.945) TCGA-39-5037-01 14 24505724 24505724 G A RP11-468E2.9 RNA 0.55 TCGA-39-5037-01 14 65008628 65008628 A T HSPA2 Missense_Mutation p.Q354L 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.738) TCGA-39-5037-01 14 74975970 74975970 C T LTBP2 Missense_Mutation p.R1125Q 0.15 tolerated(0.56) benign(0.006) TCGA-39-5037-01 14 76186151 76186151 G C TTLL5 Missense_Mutation p.E306Q 0.54 tolerated(0.18) benign(0.246) TCGA-39-5037-01 14 77808245 77808245 C A TMED8 Missense_Mutation p.D283Y 0.44 deleterious(0) probably_damaging(0.997) TCGA-39-5037-01 15 22369420 22369420 C A OR4M2 Missense_Mutation p.P282H 0.31 deleterious(0) probably_damaging(1) TCGA-39-5037-01 15 25430695 25430695 C T SNORD115-10 5'Flank 0.19 TCGA-39-5037-01 15 25442736 25442736 G T SNORD115-15 RNA 0.06 TCGA-39-5037-01 15 25475914 25475914 C A SNORD115-33 5'Flank 0.25 TCGA-39-5037-01 15 25477422 25477422 C T SNORD115-33 3'Flank 0.55 TCGA-39-5037-01 15 33938728 33938728 G A RYR3 Splice_Site p.X1314_splice 0.25 TCGA-39-5037-01 15 34640787 34640787 G C NUTM1 Missense_Mutation p.E212Q 0.45 tolerated(0.14) possibly_damaging(0.888) TCGA-39-5037-01 15 41793728 41793728 A T ITPKA Missense_Mutation p.Y186F 0.12 deleterious(0.01) possibly_damaging(0.858) TCGA-39-5037-01 15 50154566 50154566 G A ATP8B4 Missense_Mutation p.A1058V 0.23 tolerated(0.1) benign(0.003) TCGA-39-5037-01 15 50158629 50158629 C A ATP8B4 Missense_Mutation p.G1027V 0.37 deleterious(0.02) probably_damaging(1) TCGA-39-5037-01 15 70968849 70968849 T C UACA Missense_Mutation p.R372G 0.46 deleterious(0) possibly_damaging(0.87) TCGA-39-5037-01 15 83805500 83805500 C T TM6SF1 3'UTR 0.23 TCGA-39-5037-01 15 92981642 92981642 T G ST8SIA2 Missense_Mutation p.L117R 0.31 probably_damaging(0.981) TCGA-39-5037-01 16 31226446 31226446 C G TRIM72 Silent p.L129L 0.45 TCGA-39-5037-01 16 31382999 31382999 G A ITGAX Missense_Mutation p.R685H 0.27 deleterious(0.04) benign(0.187) TCGA-39-5037-01 16 31383005 31383005 G T ITGAX Missense_Mutation p.S687I 0.16 tolerated(0.45) probably_damaging(0.946) TCGA-39-5037-01 16 31424157 31424157 A T ITGAD Splice_Site p.X570_splice 0.33 TCGA-39-5037-01 16 47581411 47581411 G T PHKB Missense_Mutation p.W221L 0.24 deleterious(0.03) benign(0.262) TCGA-39-5037-01 16 62055393 62055393 G T CDH8 5'UTR 0.26 TCGA-39-5037-01 16 7568163 7568163 A C RBFOX1 Silent p.A34A 0.27 TCGA-39-5037-01 16 78064472 78064472 G C CLEC3A Missense_Mutation p.E119Q 0.24 deleterious(0.03) probably_damaging(1) TCGA-39-5037-01 16 86612267 86612267 G C FOXL1 5'UTR 0.38 TCGA-39-5037-01 17 10358039 10358039 G T MYH4 Missense_Mutation p.P842T 0.54 deleterious(0) probably_damaging(0.998) TCGA-39-5037-01 17 10433217 10433217 T A MYH2 Nonsense_Mutation p.K958* 0.36 TCGA-39-5037-01 17 11797796 11797796 G A DNAH9 Missense_Mutation p.A3797T 0.58 benign(0.213) TCGA-39-5037-01 17 1399417 1399417 C T INPP5K Silent p.E409E 0.65 TCGA-39-5037-01 17 20799334 20799334 C T CCDC144NL 5'UTR 0.11 TCGA-39-5037-01 17 3181346 3181346 T A OR3A2 Missense_Mutation p.N295I 0.69 deleterious(0) probably_damaging(0.998) TCGA-39-5037-01 17 41245215 41245215 C T BRCA1 Missense_Mutation p.G778D 0.41 tolerated(0.94) benign(0.101) TCGA-39-5037-01 17 42429094 42429094 C T GRN Silent p.S370S 0.46 TCGA-39-5037-01 17 45915974 45915974 G A SCRN2 Silent p.A287A 0.39 TCGA-39-5037-01 17 46669550 46669550 G T HOXB5 3'UTR 0.34 TCGA-39-5037-01 17 7578395 7578395 G C TP53 Missense_Mutation p.H179D 0.68 deleterious(0) probably_damaging(1) TCGA-39-5037-01 17 77768640 77768640 G C CBX8 Missense_Mutation p.R322G 0.27 tolerated(0.05) benign(0.25) TCGA-39-5037-01 17 78071154 78071154 C T CCDC40 Silent p.F1044F 0.09 TCGA-39-5037-01 18 28712547 28712547 G T DSC1 Missense_Mutation p.P741H 0.30 deleterious(0) probably_damaging(0.992) TCGA-39-5037-01 18 32886380 32886380 T C ZNF271 RNA 0.50 TCGA-39-5037-01 18 43458381 43458381 G T EPG5 Missense_Mutation p.L1968I 0.29 deleterious(0.04) probably_damaging(0.953) TCGA-39-5037-01 18 44579344 44579344 G - KATNAL2 5'UTR 0.27 TCGA-39-5037-01 19 1068656 1068656 G T HMHA1 Missense_Mutation p.V128F 0.16 tolerated(0.54) benign(0.157) TCGA-39-5037-01 19 11096052 11096052 C T SMARCA4 Missense_Mutation p.P109L 0.10 probably_damaging(0.913) TCGA-39-5037-01 19 11460627 11460627 G A CCDC159 Silent p.V23V 0.12 TCGA-39-5037-01 19 11537702 11537702 C A CCDC151 Missense_Mutation p.E201D 0.31 tolerated(0.16) benign(0.081) TCGA-39-5037-01 19 23543202 23543202 C A ZNF91 Missense_Mutation p.G860V 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-39-5037-01 19 44516734 44516734 A G ZNF230 3'UTR 0.29 TCGA-39-5037-01 19 48387031 48387031 A T SULT2A1 Missense_Mutation p.L50M 0.21 tolerated(0.88) possibly_damaging(0.568) TCGA-39-5037-01 19 51483083 51483083 C G KLK7 Silent p.L189L 0.33 TCGA-39-5037-01 19 53383976 53383976 G T ZNF320 Missense_Mutation p.S468Y 0.10 deleterious(0) possibly_damaging(0.611) TCGA-39-5037-01 19 53740505 53740505 C A ZNF677 Missense_Mutation p.C492F 0.30 deleterious(0) probably_damaging(0.997) TCGA-39-5037-01 19 54417765 54417765 G C CACNG7 Missense_Mutation p.G70R 0.15 deleterious(0.01) probably_damaging(1) TCGA-39-5037-01 19 57646258 57646258 C - ZIM3 3'UTR 0.27 TCGA-39-5037-01 19 57723617 57723617 A T ZNF264 Silent p.A384A 0.26 TCGA-39-5037-01 19 5867472 5867472 C G FUT5 Missense_Mutation p.V89L 0.28 tolerated(0.17) benign(0.013) TCGA-39-5037-01 19 6901981 6901981 G A EMR1 Missense_Mutation p.E204K 0.36 tolerated(0.74) benign(0.405) TCGA-39-5037-01 19 7914140 7914140 A G EVI5L Splice_Site p.X185_splice 0.33 TCGA-39-5037-01 19 8842253 8842253 T C OR2Z1 Missense_Mutation p.L288P 0.39 deleterious(0) probably_damaging(0.956) TCGA-39-5037-01 19 9524910 9524910 T C ZNF266 Missense_Mutation p.M231V 0.35 tolerated(0.39) benign(0.003) TCGA-39-5037-01 1 11562836 11562836 C A PTCHD2 Missense_Mutation p.L400M 0.52 tolerated(0.2) probably_damaging(0.999) TCGA-39-5037-01 1 145297636 145297636 G A NBPF10 Missense_Mutation p.D171N 0.12 probably_damaging(0.988) TCGA-39-5037-01 1 151148993 151148993 G A VPS72 3'UTR 0.77 TCGA-39-5037-01 1 152190789 152190789 C T HRNR Missense_Mutation p.G1106S 0.30 unknown(0) TCGA-39-5037-01 1 154067592 154067592 G T NUP210L Missense_Mutation p.S669Y 0.16 deleterious(0) probably_damaging(0.968) TCGA-39-5037-01 1 157666858 157666858 G T FCRL3 Intron 0.14 TCGA-39-5037-01 1 158450081 158450081 G T OR10R2 Missense_Mutation p.M138I 0.12 deleterious(0.01) probably_damaging(0.961) TCGA-39-5037-01 1 176679237 176679237 T G PAPPA2 Silent p.A1192A 0.60 TCGA-39-5037-01 1 178427316 178427316 G A RASAL2 Silent p.K963K 0.50 TCGA-39-5037-01 1 186412951 186412951 A G PDC 3'UTR 0.64 TCGA-39-5037-01 1 201047035 201047035 G A CACNA1S Missense_Mutation p.R531C 0.05 deleterious(0) probably_damaging(0.998) TCGA-39-5037-01 1 204588718 204588718 G - LRRN2 Frame_Shift_Del p.H135Tfs*43 0.41 TCGA-39-5037-01 1 207087143 207087143 G T FAIM3 Silent p.R112R 0.45 TCGA-39-5037-01 1 237532900 237532900 A G RYR2 Missense_Mutation p.S126G 0.56 benign(0.246) TCGA-39-5037-01 1 237936851 237936851 C A RYR2 Missense_Mutation p.S3893Y 0.22 probably_damaging(0.997) TCGA-39-5037-01 1 247902510 247902510 G T OR14K1 Silent p.V198V 0.44 TCGA-39-5037-01 1 248343796 248343796 G T OR2M2 Missense_Mutation p.G170V 0.22 deleterious(0.01) possibly_damaging(0.883) TCGA-39-5037-01 1 248343797 248343797 G T OR2M2 Silent p.G170G 0.22 TCGA-39-5037-01 1 27106599 27106599 G T ARID1A Missense_Mutation p.Q2070H 0.52 benign(0.359) TCGA-39-5037-01 1 3670758 3670758 C A CCDC27 Missense_Mutation p.P132H 0.50 deleterious(0) probably_damaging(0.979) TCGA-39-5037-01 1 76397808 76397808 A G ASB17 Missense_Mutation p.Y57H 0.56 tolerated_low_confidence(0.38) possibly_damaging(0.86) TCGA-39-5037-01 1 85331494 85331494 G A LPAR3 Missense_Mutation p.L104F 0.57 tolerated(0.14) benign(0.078) TCGA-39-5037-01 1 93163484 93163484 C A EVI5 Missense_Mutation p.R277L 0.56 deleterious(0) probably_damaging(1) TCGA-39-5037-01 1 9782144 9782144 G A PIK3CD Missense_Mutation p.A723T 0.18 tolerated(0.54) benign(0) TCGA-39-5037-01 20 35467818 35467818 C A SOGA1 Missense_Mutation p.E238D 0.47 deleterious(0) probably_damaging(0.999) TCGA-39-5037-01 20 37580822 37580822 T G FAM83D Missense_Mutation p.S503A 0.50 tolerated(0.06) possibly_damaging(0.721) TCGA-39-5037-01 20 43851456 43851456 C G SEMG2 Missense_Mutation p.Q395E 0.09 tolerated(0.1) probably_damaging(0.926) TCGA-39-5037-01 20 60901774 60901774 T C LAMA5 Missense_Mutation p.T1753A 0.58 benign(0.015) TCGA-39-5037-01 20 61907461 61907461 G A ARFGAP1 Missense_Mutation p.A27T 0.04 tolerated(0.33) benign(0.236) TCGA-39-5037-01 21 43735446 43735446 C T TFF3 Silent p.L27L 0.49 TCGA-39-5037-01 21 47556289 47556289 A G FTCD 3'UTR 0.65 TCGA-39-5037-01 22 18570928 18570928 T C PEX26 3'UTR 0.28 TCGA-39-5037-01 22 21988721 21988721 T C CCDC116 Silent p.H161H 0.48 TCGA-39-5037-01 22 23063563 23063563 C A IGLV3-19 Silent p.S90S 0.45 TCGA-39-5037-01 22 23237706 23237706 G A IGLL5 Silent p.A159A 0.07 TCGA-39-5037-01 22 24837046 24837046 C G ADORA2A Silent p.L276L 0.06 TCGA-39-5037-01 22 24837160 24837160 C A ADORA2A Missense_Mutation p.F314L 0.07 tolerated(0.54) benign(0) TCGA-39-5037-01 22 24985841 24985841 A G FAM211B Missense_Mutation p.I85T 0.25 deleterious(0) probably_damaging(0.997) TCGA-39-5037-01 22 35463100 35463100 C A ISX Missense_Mutation p.P7H 0.43 deleterious_low_confidence(0) possibly_damaging(0.879) TCGA-39-5037-01 22 41716691 41716691 C T ZC3H7B Silent p.D9D 0.12 TCGA-39-5037-01 22 50278006 50278006 T G ZBED4 Silent p.S232S 0.25 TCGA-39-5037-01 2 100065857 100065857 A T REV1 Missense_Mutation p.N97K 0.57 deleterious(0.01) possibly_damaging(0.861) TCGA-39-5037-01 2 100203674 100203674 G C AFF3 Missense_Mutation p.L870V 0.20 tolerated(0.07) benign(0.438) TCGA-39-5037-01 2 102636197 102636197 A G IL1R2 Missense_Mutation p.Y204C 0.17 deleterious(0) probably_damaging(0.973) TCGA-39-5037-01 2 114512814 114512814 C T SLC35F5 Silent p.R67R 0.20 TCGA-39-5037-01 2 127447886 127447886 A C GYPC Silent p.A35A 0.66 TCGA-39-5037-01 2 130900830 130900830 C A CCDC74B Intron 0.62 TCGA-39-5037-01 2 133489454 133489454 G A NCKAP5 Nonsense_Mutation p.Q1767* 0.48 TCGA-39-5037-01 2 162751258 162751258 G A SLC4A10 Missense_Mutation p.D422N 0.22 deleterious(0) probably_damaging(0.999) TCGA-39-5037-01 2 166165901 166165901 G C SCN2A Intron 0.49 TCGA-39-5037-01 2 175213308 175213308 G A CIR1 Missense_Mutation p.H424Y 0.37 deleterious_low_confidence(0.03) probably_damaging(0.976) TCGA-39-5037-01 2 175436784 175436784 G A WIPF1 Missense_Mutation p.P250L 0.50 deleterious(0) probably_damaging(0.998) TCGA-39-5037-01 2 179588322 179588322 T A TTN Missense_Mutation p.N7169Y 0.43 TCGA-39-5037-01 2 185803334 185803334 C - ZNF804A Frame_Shift_Del p.P1071Qfs*25 0.27 TCGA-39-5037-01 2 196849409 196849409 C A DNAH7 Missense_Mutation p.A594S 0.25 tolerated(0.33) benign(0.007) TCGA-39-5037-01 2 200137310 200137310 T C SATB2 Missense_Mutation p.D609G 0.24 tolerated(0.36) benign(0.005) TCGA-39-5037-01 2 201521602 201521602 T C AOX1 Missense_Mutation p.V1038A 0.26 deleterious(0.02) benign(0.074) TCGA-39-5037-01 2 211082716 211082716 T A ACADL Missense_Mutation p.Y115F 0.14 tolerated(0.69) benign(0.005) TCGA-39-5037-01 2 212989624 212989624 A T ERBB4 Nonsense_Mutation p.C29* 0.50 TCGA-39-5037-01 2 232325391 232325393 TCT - NCL In_Frame_Del p.E271del 0.15 TCGA-39-5037-01 2 237149976 237149976 T C ASB18 Missense_Mutation p.N92S 0.25 tolerated(0.96) benign(0.002) TCGA-39-5037-01 2 241569781 241569781 G A GPR35 Missense_Mutation p.A169T 0.48 tolerated(0.1) benign(0.052) TCGA-39-5037-01 2 48915452 48915452 G A LHCGR Missense_Mutation p.S495F 0.51 tolerated(0.78) benign(0.002) TCGA-39-5037-01 2 71886131 71886131 T C DYSF Missense_Mutation p.F1627L 0.13 tolerated(0.54) benign(0.003) TCGA-39-5037-01 2 79313940 79313940 C A REG1B Missense_Mutation p.D61Y 0.25 deleterious(0.04) possibly_damaging(0.761) TCGA-39-5037-01 2 89339823 89339823 C - IGKV1-12 Frame_Shift_Del p.R83Sfs*? 0.26 TCGA-39-5037-01 2 89475835 89475835 A G IGKV2-24 Missense_Mutation p.C113R 0.66 deleterious(0) probably_damaging(0.954) TCGA-39-5037-01 2 95539813 95539813 G A TEKT4 Missense_Mutation p.E225K 0.52 tolerated(0.06) benign(0.067) TCGA-39-5037-01 3 142681325 142681325 A T PAQR9 Missense_Mutation p.V285E 0.04 deleterious(0.01) possibly_damaging(0.604) TCGA-39-5037-01 3 142681705 142681705 G C PAQR9 Nonsense_Mutation p.Y158* 0.16 TCGA-39-5037-01 3 142681846 142681846 G T PAQR9 Missense_Mutation p.D111E 0.15 tolerated(0.9) benign(0.006) TCGA-39-5037-01 3 142841059 142841059 G T CHST2 Missense_Mutation p.K467N 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-39-5037-01 3 16475533 16475534 - A RFTN1 Frame_Shift_Ins p.G53Wfs*12 0.40 TCGA-39-5037-01 3 167750570 167750570 T C GOLIM4 Missense_Mutation p.Y305C 0.26 tolerated(0.15) possibly_damaging(0.556) TCGA-39-5037-01 3 170811627 170811627 C T TNIK Splice_Site p.X907_splice 0.07 TCGA-39-5037-01 3 173322205 173322205 G T NLGN1 5'UTR 0.10 TCGA-39-5037-01 3 182683507 182683507 C T DCUN1D1 Missense_Mutation p.R13H 0.10 tolerated(0.08) benign(0.186) TCGA-39-5037-01 3 195517097 195517097 G A MUC4 Missense_Mutation p.H452Y 0.72 unknown(0) TCGA-39-5037-01 3 196654678 196654678 G T SENP5 Missense_Mutation p.K678N 0.71 deleterious(0.02) probably_damaging(0.999) TCGA-39-5037-01 3 197762799 197762799 G A LMLN Missense_Mutation p.M621I 0.73 tolerated(0.28) benign(0.03) TCGA-39-5037-01 3 30842566 30842566 T A GADL1 Missense_Mutation p.K355N 0.58 tolerated(0.39) benign(0.014) TCGA-39-5037-01 3 44761767 44761767 A T ZNF502 Missense_Mutation p.Q5L 0.63 deleterious_low_confidence(0) benign(0) TCGA-39-5037-01 3 51864598 51864598 G T IQCF3 Silent p.L82L 0.57 TCGA-39-5037-01 4 101342458 101342458 C A EMCN Missense_Mutation p.M215I 0.63 tolerated(0.12) possibly_damaging(0.708) TCGA-39-5037-01 4 113538950 113538950 A G C4orf21 Missense_Mutation p.C750R 0.72 tolerated(0.37) benign(0.002) TCGA-39-5037-01 4 121957867 121957867 C T NDNF Missense_Mutation p.R420Q 0.60 tolerated(0.45) benign(0.419) TCGA-39-5037-01 4 159514595 159514595 C A RXFP1 Missense_Mutation p.A77D 0.51 tolerated(0.12) benign(0.01) TCGA-39-5037-01 4 165878495 165878495 G T FAM218A Silent p.T107T 0.46 TCGA-39-5037-01 4 169392938 169392938 A G DDX60L Missense_Mutation p.L75P 0.48 deleterious(0) probably_damaging(0.95) TCGA-39-5037-01 4 170057544 170057544 G A SH3RF1 Silent p.L331L 0.40 TCGA-39-5037-01 4 178272546 178272548 TAG AA NEIL3 Frame_Shift_Del p.R295Kfs*4 0.37 TCGA-39-5037-01 4 22820400 22820400 A T GBA3 Missense_Mutation p.N422Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-39-5037-01 4 48422177 48422177 C T SLAIN2 Missense_Mutation p.P466S 0.68 tolerated(0.47) probably_damaging(0.998) TCGA-39-5037-01 4 759926 759926 C T PCGF3 3'UTR 0.27 TCGA-39-5037-01 4 89527029 89527029 C A HERC3 Missense_Mutation p.Q19K 0.65 tolerated(0.08) benign(0.001) TCGA-39-5037-01 4 94006266 94006266 C T GRID2 Missense_Mutation p.S122L 0.59 deleterious_low_confidence(0.03) benign(0.41) TCGA-39-5037-01 5 132150984 132150984 T C SOWAHA 3'UTR 0.42 TCGA-39-5037-01 5 140262150 140262150 C T PCDHA13 Silent p.S99S 0.19 TCGA-39-5037-01 5 150928931 150928931 T C FAT2 Missense_Mutation p.T1572A 0.12 benign(0.077) TCGA-39-5037-01 5 163559 163559 G T PLEKHG4B Silent p.P768P 0.48 TCGA-39-5037-01 5 169145667 169145667 G T DOCK2 Missense_Mutation p.L713F 0.40 deleterious(0) probably_damaging(0.972) TCGA-39-5037-01 5 19473725 19473725 T G CDH18 Missense_Mutation p.E661D 0.43 deleterious(0) benign(0.04) TCGA-39-5037-01 5 24537623 24537623 G T CDH10 Missense_Mutation p.A131D 0.18 deleterious(0) probably_damaging(0.999) TCGA-39-5037-01 5 26903886 26903886 G A CDH9 Missense_Mutation p.L287F 0.15 deleterious(0) benign(0.238) TCGA-39-5037-01 5 40716530 40716530 G A TTC33 Missense_Mutation p.S169F 0.45 tolerated(0.06) possibly_damaging(0.646) TCGA-39-5037-01 5 53839315 53839315 A T SNX18 3'UTR 0.20 TCGA-39-5037-01 5 55147335 55147335 G C IL31RA 5'UTR 0.30 TCGA-39-5037-01 5 58021831 58021831 C G RAB3C Missense_Mutation p.D85E 0.34 deleterious(0) probably_damaging(0.989) TCGA-39-5037-01 5 71491608 71491608 T A MAP1B Missense_Mutation p.M809K 0.23 unknown(0) TCGA-39-5037-01 5 75950040 75950040 C T IQGAP2 Nonsense_Mutation p.R732* 0.16 TCGA-39-5037-01 6 100368871 100368871 C A MCHR2 Missense_Mutation p.R323I 0.24 tolerated(0.06) benign(0.278) TCGA-39-5037-01 6 109980541 109980541 C T AK9 Missense_Mutation p.D174N 0.22 tolerated(0.64) benign(0.068) TCGA-39-5037-01 6 110944071 110944071 C A CDK19 Silent p.S326S 0.23 TCGA-39-5037-01 6 126805844 126805844 C T MIR588 RNA 0.33 TCGA-39-5037-01 6 152540290 152540290 C A SYNE1 Missense_Mutation p.D7298Y 0.16 possibly_damaging(0.702) TCGA-39-5037-01 6 152651824 152651824 C T SYNE1 Missense_Mutation p.V4666I 0.15 benign(0.009) TCGA-39-5037-01 6 160218358 160218358 T C MRPL18 Silent p.L93L 0.41 TCGA-39-5037-01 6 17649457 17649457 A G NUP153 Silent p.S490S 0.19 TCGA-39-5037-01 6 25773531 25773531 C T SLC17A4 Silent p.L245L 0.22 TCGA-39-5037-01 6 31929803 31929803 A G SKIV2L Missense_Mutation p.I346V 0.45 deleterious(0) probably_damaging(0.998) TCGA-39-5037-01 6 38790651 38790651 G T DNAH8 Missense_Mutation p.K970N 0.24 benign(0.002) TCGA-39-5037-01 6 42625796 42625796 A G UBR2 Missense_Mutation p.I969M 0.56 deleterious(0) benign(0.354) TCGA-39-5037-01 6 43498432 43498432 T A XPO5 Missense_Mutation p.M891L 0.12 tolerated(0.8) benign(0) TCGA-39-5037-01 6 44199199 44199199 G C SLC29A1 Splice_Site p.X288_splice 0.20 TCGA-39-5037-01 6 51613404 51613404 C G PKHD1 Missense_Mutation p.V3004L 0.40 deleterious(0.04) benign(0.042) TCGA-39-5037-01 6 5999430 5999430 C G NRN1 Missense_Mutation p.E70Q 0.35 deleterious(0.01) benign(0.211) TCGA-39-5037-01 6 70049245 70049245 G T BAI3 Missense_Mutation p.C1103F 0.47 deleterious(0) probably_damaging(0.959) TCGA-39-5037-01 6 86324670 86324670 C T SYNCRIP Missense_Mutation p.G559E 0.27 deleterious(0) unknown(0) TCGA-39-5037-01 6 88046835 88046835 G A SMIM8 Missense_Mutation p.R29H 0.11 tolerated(0.08) benign(0.004) TCGA-39-5037-01 6 90497611 90497611 C T MDN1 Silent p.L432L 0.49 TCGA-39-5037-01 6 90575901 90575901 G A CASP8AP2 RNA 0.54 TCGA-39-5037-01 7 100187505 100187505 C T FBXO24 Intron 0.27 TCGA-39-5037-01 7 100454632 100454632 C A SLC12A9 Missense_Mutation p.F197L 0.27 tolerated(0.61) benign(0.075) TCGA-39-5037-01 7 100888346 100888346 T C FIS1 5'UTR 0.14 TCGA-39-5037-01 7 106710740 106710740 C T PRKAR2B Nonsense_Mutation p.R108* 0.27 TCGA-39-5037-01 7 110303734 110303734 C A IMMP2L Missense_Mutation p.W151L 0.29 deleterious(0) probably_damaging(0.996) TCGA-39-5037-01 7 12683806 12683806 T G SCIN Missense_Mutation p.V542G 0.10 deleterious(0) probably_damaging(0.961) TCGA-39-5037-01 7 138604033 138604033 C T KIAA1549 Silent p.P113P 0.13 TCGA-39-5037-01 7 139257806 139257806 G T HIPK2 Nonsense_Mutation p.S1155* 0.38 TCGA-39-5037-01 7 140259565 140259565 A C DENND2A Missense_Mutation p.I611S 0.20 deleterious(0) probably_damaging(0.998) TCGA-39-5037-01 7 146741040 146741040 C T CNTNAP2 Silent p.H148H 0.10 TCGA-39-5037-01 7 151891602 151891602 T C KMT2C Missense_Mutation p.N1477S 0.58 benign(0.002) TCGA-39-5037-01 7 37780147 37780147 C A GPR141 Missense_Mutation p.T51N 0.04 deleterious(0.02) probably_damaging(0.997) TCGA-39-5037-01 7 37956067 37956067 C T SFRP4 Missense_Mutation p.E25K 0.47 deleterious(0) probably_damaging(0.971) TCGA-39-5037-01 7 38393611 38393611 G A TRGV4 Missense_Mutation p.S20F 0.15 tolerated(0.05) benign(0.117) TCGA-39-5037-01 7 44747291 44747291 G T OGDH Silent p.V969V 0.20 TCGA-39-5037-01 7 50097646 50097646 G C ZPBP Silent p.L142L 0.03 TCGA-39-5037-01 7 53104039 53104039 G T POM121L12 Silent p.A225A 0.26 TCGA-39-5037-01 7 57509901 57509901 C A ZNF716 5'UTR 0.21 TCGA-39-5037-01 7 62752326 62752326 G C ZNF733P RNA 0.11 TCGA-39-5037-01 7 71743678 71743678 C A CALN1 Missense_Mutation p.E79D 0.43 deleterious(0.01) benign(0.101) TCGA-39-5037-01 7 73944172 73944172 G A GTF2IRD1 Missense_Mutation p.R432H 0.16 deleterious(0) probably_damaging(0.991) TCGA-39-5037-01 7 98580986 98580986 A G TRRAP Missense_Mutation p.T2969A 0.35 benign(0.02) TCGA-39-5037-01 8 105263326 105263326 A T RIMS2 Missense_Mutation p.T1256S 0.36 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-39-5037-01 8 105361446 105361446 C A DCSTAMP Silent p.L222L 0.38 TCGA-39-5037-01 8 113256633 113256633 G T CSMD3 Silent p.P3464P 0.19 TCGA-39-5037-01 8 113569047 113569047 G A CSMD3 Silent p.L1393L 0.24 TCGA-39-5037-01 8 114389062 114389062 C G CSMD3 Intron 0.28 TCGA-39-5037-01 8 11607646 11607646 C G GATA4 Silent p.S270S 0.21 TCGA-39-5037-01 8 116599281 116599281 A T TRPS1 Missense_Mutation p.Y883N 0.38 deleterious_low_confidence(0) benign(0.203) TCGA-39-5037-01 8 126369499 126369499 G A NSMCE2 Missense_Mutation p.G153R 0.36 tolerated(0.42) benign(0.01) TCGA-39-5037-01 8 128428657 128428657 G T POU5F1B Missense_Mutation p.K182N 0.24 deleterious(0) benign(0.099) TCGA-39-5037-01 8 139163694 139163694 G T FAM135B Silent p.S1008S 0.34 TCGA-39-5037-01 8 139207519 139207519 C A FAM135B Missense_Mutation p.Q285H 0.26 deleterious(0.01) possibly_damaging(0.764) TCGA-39-5037-01 8 145746733 145746733 C T LRRC14 Silent p.S451S 0.17 TCGA-39-5037-01 8 196171 196171 A G ZNF596 Missense_Mutation p.T442A 0.22 deleterious(0) possibly_damaging(0.647) TCGA-39-5037-01 8 2020527 2020527 G T MYOM2 Missense_Mutation p.C299F 0.37 deleterious(0) probably_damaging(1) TCGA-39-5037-01 8 26365833 26365833 C T PNMA2 Missense_Mutation p.G147R 0.08 tolerated(0.1) benign(0.029) TCGA-39-5037-01 8 61735246 61735246 G T CHD7 Missense_Mutation p.G1048W 0.34 probably_damaging(1) TCGA-39-5037-01 8 61774820 61774820 C T CHD7 Silent p.N2632N 0.18 TCGA-39-5037-01 8 75737636 75737636 C T PI15 Missense_Mutation p.A51V 0.32 tolerated(0.29) benign(0.001) TCGA-39-5037-01 8 85097152 85097152 C A RALYL 5'UTR 0.33 TCGA-39-5037-01 9 104238559 104238559 C A TMEM246 Silent p.L272L 0.64 TCGA-39-5037-01 9 115818955 115818955 C T ZFP37 Missense_Mutation p.S5N 0.56 tolerated_low_confidence(0.77) benign(0.016) TCGA-39-5037-01 9 120475457 120475457 A T TLR4 Nonsense_Mutation p.K351* 0.53 TCGA-39-5037-01 9 125281783 125281783 C G OR1J4 Missense_Mutation p.R122G 0.56 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-39-5037-01 9 125315489 125315489 G T OR1N2 Missense_Mutation p.G14V 0.67 tolerated(0.23) benign(0.004) TCGA-39-5037-01 9 129594781 129594781 G T ZBTB43 5'UTR 0.48 TCGA-39-5037-01 9 130430389 130430389 G T STXBP1 Silent p.R275R 0.10 TCGA-39-5037-01 9 139393588 139393588 C G NOTCH1 Missense_Mutation p.D2020H 0.56 deleterious(0) probably_damaging(1) TCGA-39-5037-01 9 14824964 14824964 C A FREM1 Silent p.V636V 0.61 TCGA-39-5037-01 9 37356933 37356933 T C ZCCHC7 Missense_Mutation p.W434R 0.56 tolerated(0.71) benign(0) TCGA-39-5037-01 9 37745120 37745120 C A FRMPD1 Missense_Mutation p.P1031T 0.43 tolerated_low_confidence(0.06) benign(0.017) TCGA-39-5037-01 X 101382216 101382216 C A TCEAL2 Silent p.A138A 0.57 TCGA-39-5037-01 X 106410992 106410992 G A NUP62CL Silent p.T27T 0.23 TCGA-39-5037-01 X 153136600 153136600 G T L1CAM Silent p.P145P 0.71 TCGA-39-5037-01 X 36162975 36162975 C A CHDC2 3'UTR 0.69 TCGA-39-5037-01 X 83320047 83320047 A T RPS6KA6 Missense_Mutation p.W682R 0.27 deleterious(0) probably_damaging(0.999) TCGA-39-5039-01 10 125426542 125426542 G A GPR26 Missense_Mutation p.D207N 0.14 deleterious(0.04) possibly_damaging(0.474) TCGA-39-5039-01 10 127569451 127569451 T A DHX32 5'UTR 0.10 TCGA-39-5039-01 10 52008284 52008284 G T ASAH2 Missense_Mutation p.S29R 0.24 deleterious_low_confidence(0.02) benign(0.372) TCGA-39-5039-01 10 53564377 53564377 C A PRKG1 Silent p.R209R 0.11 TCGA-39-5039-01 10 67680256 67680256 C A CTNNA3 Silent p.G840G 0.14 TCGA-39-5039-01 10 98031214 98031214 T C BLNK 5'UTR 0.09 TCGA-39-5039-01 11 11354266 11354266 T C GALNT18 Missense_Mutation p.Y464C 0.04 deleterious(0.01) probably_damaging(0.975) TCGA-39-5039-01 11 117258018 117258018 G T CEP164 Missense_Mutation p.R608S 0.18 tolerated(0.14) possibly_damaging(0.487) TCGA-39-5039-01 11 119217302 119217302 T A MFRP 5'UTR 0.22 TCGA-39-5039-01 11 122756635 122756635 A T C11orf63 Silent p.T26T 0.06 TCGA-39-5039-01 11 1268600 1268600 C G MUC5B Missense_Mutation p.A3497G 0.20 unknown(0) TCGA-39-5039-01 11 18745750 18745750 C T IGSF22 Missense_Mutation p.E12K 0.05 tolerated_low_confidence(0.05) benign(0.007) TCGA-39-5039-01 11 55322397 55322397 C A OR4C15 Silent p.G205G 0.10 TCGA-39-5039-01 11 56258430 56258430 C A OR5M8 Silent p.V139V 0.20 TCGA-39-5039-01 11 5799147 5799147 A T OR52N5 Missense_Mutation p.S240T 0.10 tolerated(0.27) benign(0.013) TCGA-39-5039-01 11 57995755 57995755 C A OR10Q1 Missense_Mutation p.R198L 0.15 deleterious(0.03) benign(0.396) TCGA-39-5039-01 11 5799598 5799598 A G OR52N5 Silent p.N89N 0.09 TCGA-39-5039-01 11 59420456 59420456 C T PATL1 Missense_Mutation p.G386E 0.17 tolerated(0.38) benign(0.003) TCGA-39-5039-01 11 61050268 61050268 G A VWCE Silent p.S217S 0.09 TCGA-39-5039-01 11 9005642 9005642 G T NRIP3 Missense_Mutation p.L198I 0.09 deleterious(0) possibly_damaging(0.845) TCGA-39-5039-01 12 10241723 10241723 A G CLEC1A Missense_Mutation p.F72L 0.17 tolerated(0.15) benign(0.018) TCGA-39-5039-01 12 113312915 113312915 G T RPH3A Missense_Mutation p.A275S 0.27 tolerated(0.55) benign(0.063) TCGA-39-5039-01 12 124840069 124840069 G A NCOR2 Missense_Mutation p.P1097L 0.12 probably_damaging(0.981) TCGA-39-5039-01 12 14947514 14947514 G A WBP11 Silent p.P226P 0.13 TCGA-39-5039-01 12 26218104 26218104 G A RASSF8 Silent p.K259K 0.05 TCGA-39-5039-01 12 27553684 27553684 A G ARNTL2 Silent p.G379G 0.14 TCGA-39-5039-01 12 2933085 2933085 A T ITFG2 Missense_Mutation p.S406C 0.15 tolerated(0.07) benign(0.003) TCGA-39-5039-01 12 47629351 47629351 G T PCED1B Missense_Mutation p.G169C 0.07 deleterious(0) probably_damaging(0.997) TCGA-39-5039-01 12 54576119 54576119 C G SMUG1 Missense_Mutation p.G192R 0.08 tolerated(0.5) benign(0.038) TCGA-39-5039-01 12 56234994 56234994 G T MMP19 Missense_Mutation p.P67Q 0.10 tolerated(0.1) probably_damaging(1) TCGA-39-5039-01 12 69968278 69968278 C G FRS2 Missense_Mutation p.P357R 0.11 deleterious(0.03) benign(0.042) TCGA-39-5039-01 12 70963667 70963667 C T PTPRB Missense_Mutation p.S1141N 0.18 tolerated(0.05) probably_damaging(0.913) TCGA-39-5039-01 12 80672819 80672819 G T OTOGL Missense_Mutation p.R925L 0.04 deleterious(0) probably_damaging(0.924) TCGA-39-5039-01 12 8608653 8608653 T C CLEC6A 5'UTR 0.17 TCGA-39-5039-01 12 88508920 88508920 C A CEP290 Missense_Mutation p.D622Y 0.13 probably_damaging(0.982) TCGA-39-5039-01 13 113460563 113460563 G A ATP11A Missense_Mutation p.G97R 0.27 deleterious(0.02) probably_damaging(0.927) TCGA-39-5039-01 13 38357198 38357198 G T TRPC4 Missense_Mutation p.S91R 0.20 tolerated(0.28) benign(0.343) TCGA-39-5039-01 13 80910886 80910886 A C SPRY2 3'UTR 0.25 TCGA-39-5039-01 13 94197638 94197638 C T GPC6 Missense_Mutation p.R95C 0.21 deleterious(0) probably_damaging(0.93) TCGA-39-5039-01 14 24470661 24470661 G C DHRS4L2 Silent p.L200L 0.06 TCGA-39-5039-01 14 24877097 24877097 G T NYNRIN Missense_Mutation p.S74I 0.19 deleterious_low_confidence(0) benign(0.295) TCGA-39-5039-01 14 38679133 38679133 G T SSTR1 Missense_Mutation p.G180V 0.30 deleterious(0.04) benign(0.375) TCGA-39-5039-01 14 67555743 67555743 C T GPHN Silent p.D396D 0.24 TCGA-39-5039-01 14 91369242 91369242 T G RPS6KA5 Missense_Mutation p.L343F 0.20 deleterious(0.02) possibly_damaging(0.838) TCGA-39-5039-01 14 92480787 92480787 T C TRIP11 Missense_Mutation p.K320E 0.05 tolerated(1) benign(0.005) TCGA-39-5039-01 14 94048554 94048554 C A UNC79 Silent p.P712P 0.11 TCGA-39-5039-01 15 22383115 22383115 C T OR4N4 Silent p.L215L 0.11 TCGA-39-5039-01 15 42158429 42158429 T A SPTBN5 Splice_Site p.X2211_splice 0.27 TCGA-39-5039-01 15 54799355 54799355 C G UNC13C Nonsense_Mutation p.S1781* 0.11 TCGA-39-5039-01 15 83935686 83935686 C A BNC1 Missense_Mutation p.D113Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-39-5039-01 16 21995486 21995486 G T PDZD9 3'UTR 0.12 TCGA-39-5039-01 16 2998759 2998759 C T FLYWCH1 3'UTR 0.12 TCGA-39-5039-01 16 48295410 48295410 A T LONP2 Missense_Mutation p.N267Y 0.14 deleterious(0.02) benign(0.027) TCGA-39-5039-01 16 50745873 50745873 G T NOD2 Missense_Mutation p.R684L 0.13 deleterious(0.02) benign(0.073) TCGA-39-5039-01 16 65016007 65016007 G A CDH11 Silent p.G399G 0.12 TCGA-39-5039-01 16 77355045 77355045 C A ADAMTS18 Missense_Mutation p.V740F 0.11 deleterious(0.03) benign(0.195) TCGA-39-5039-01 16 77375655 77375655 C G ADAMTS18 Missense_Mutation p.R552S 0.10 deleterious(0) benign(0.218) TCGA-39-5039-01 17 11648345 11648345 G T DNAH9 Missense_Mutation p.V2115F 0.14 benign(0.442) TCGA-39-5039-01 17 46685369 46685369 C A HOXB7 Silent p.T163T 0.10 TCGA-39-5039-01 17 46685422 46685422 G A HOXB7 Missense_Mutation p.R146C 0.08 deleterious(0.03) benign(0.262) TCGA-39-5039-01 17 61972734 61972734 C T CSH1 Intron 0.08 TCGA-39-5039-01 17 61995185 61995185 C T GH1 Missense_Mutation p.A131T 0.16 tolerated(1) benign(0.004) TCGA-39-5039-01 17 7579312 7579312 C A TP53 Silent p.T125T 0.12 TCGA-39-5039-01 17 7807757 7807759 CAG - CHD3 Splice_Site p.X1358_splice 0.18 TCGA-39-5039-01 17 79974718 79974718 C T ASPSCR1 Missense_Mutation p.P577L 0.09 deleterious(0) probably_damaging(0.958) TCGA-39-5039-01 18 347175 347175 C - COLEC12 Frame_Shift_Del p.R149Sfs*5 0.16 TCGA-39-5039-01 18 55355660 55355660 C A ATP8B1 Missense_Mutation p.A434S 0.17 deleterious(0.02) possibly_damaging(0.705) TCGA-39-5039-01 18 63530206 63530206 G C CDH7 Intron 0.10 TCGA-39-5039-01 19 17426741 17426741 A T DDA1 Splice_Site p.X46_splice 0.19 TCGA-39-5039-01 19 18377695 18377695 T C KIAA1683 Missense_Mutation p.T219A 0.32 tolerated(0.71) benign(0.001) TCGA-39-5039-01 19 19313117 19313117 C T NR2C2AP Intron 0.16 TCGA-39-5039-01 19 22155926 22155926 T C ZNF208 Missense_Mutation p.Y637C 0.16 deleterious(0.02) probably_damaging(0.945) TCGA-39-5039-01 19 35505200 35505200 C T GRAMD1A Silent p.D326D 0.04 TCGA-39-5039-01 19 40761067 40761067 C T AKT2 Silent p.E95E 0.06 TCGA-39-5039-01 19 46357737 46357737 C T SYMPK Missense_Mutation p.G6E 0.09 deleterious_low_confidence(0.01) benign(0.228) TCGA-39-5039-01 19 51981926 51981926 G T CEACAM18 Silent p.L71L 0.08 TCGA-39-5039-01 19 54724576 54724576 C T LILRB3 Silent p.G360G 0.17 TCGA-39-5039-01 19 6897289 6897289 G T EMR1 Missense_Mutation p.G123V 0.23 deleterious(0.02) possibly_damaging(0.781) TCGA-39-5039-01 19 9063188 9063188 T A MUC16 Silent p.P8086P 0.18 TCGA-39-5039-01 1 100357256 100357256 A G AGL Missense_Mutation p.Y1015C 0.12 tolerated(0.05) benign(0.234) TCGA-39-5039-01 1 114397560 114397560 C T PTPN22 Missense_Mutation p.D218N 0.19 deleterious(0.01) possibly_damaging(0.526) TCGA-39-5039-01 1 120050217 120050217 G A HSD3B1 Missense_Mutation p.G40R 0.19 tolerated(1) benign(0.001) TCGA-39-5039-01 1 120050218 120050218 G T HSD3B1 Missense_Mutation p.G40V 0.18 tolerated(0.05) benign(0.063) TCGA-39-5039-01 1 152185453 152185453 G T HRNR 3'UTR 0.31 TCGA-39-5039-01 1 155171258 155171258 G C THBS3 Missense_Mutation p.H427D 0.11 tolerated(1) benign(0.078) TCGA-39-5039-01 1 158263325 158263325 C T CD1C 3'UTR 0.11 TCGA-39-5039-01 1 159683523 159683523 T A CRP Missense_Mutation p.E156V 0.12 deleterious(0) probably_damaging(0.922) TCGA-39-5039-01 1 159683524 159683524 C A CRP Nonsense_Mutation p.E156* 0.11 TCGA-39-5039-01 1 160128811 160128811 G A ATP1A4 Missense_Mutation p.G182E 0.08 tolerated(0.34) benign(0.418) TCGA-39-5039-01 1 163172658 163172658 T C RGS5 5'UTR 0.11 TCGA-39-5039-01 1 183536474 183536483 CAGAGCCCTG - NCF2 Splice_Site p.X238_splice 0.11 TCGA-39-5039-01 1 190067601 190067601 G T BRINP3 Missense_Mutation p.N616K 0.08 deleterious(0) benign(0.214) TCGA-39-5039-01 1 20302020 20302020 C G PLA2G2A 3'UTR 0.21 TCGA-39-5039-01 1 207103673 207103673 T C PIGR Missense_Mutation p.Q762R 0.20 tolerated(0.69) benign(0.001) TCGA-39-5039-01 1 222715355 222715355 T A HHIPL2 Nonsense_Mutation p.K373* 0.16 TCGA-39-5039-01 1 27057875 27057875 A T ARID1A Missense_Mutation p.Q528L 0.13 benign(0) TCGA-39-5039-01 1 32742069 32742069 C G LCK Missense_Mutation p.Q255E 0.20 deleterious(0.01) probably_damaging(0.962) TCGA-39-5039-01 1 39927568 39927568 C T MACF1 Silent p.T5120T 0.10 TCGA-39-5039-01 1 45271199 45271199 G T PLK3 Missense_Mutation p.G597V 0.16 tolerated(0.13) possibly_damaging(0.724) TCGA-39-5039-01 1 47689738 47689738 A G TAL1 Missense_Mutation p.M160T 0.10 deleterious(0) benign(0.016) TCGA-39-5039-01 1 52867041 52867041 G T ORC1 Missense_Mutation p.F72L 0.08 deleterious(0.01) possibly_damaging(0.871) TCGA-39-5039-01 1 78432396 78432396 C A FUBP1 Missense_Mutation p.G152V 0.18 deleterious(0) probably_damaging(0.999) TCGA-39-5039-01 1 78432397 78432397 C A FUBP1 Nonsense_Mutation p.G152* 0.18 TCGA-39-5039-01 1 9083027 9083027 G A SLC2A7 Silent p.G87G 0.12 TCGA-39-5039-01 20 30028537 30028538 GC T DEFB123 Frame_Shift_Del p.L13Sfs*5 0.09 TCGA-39-5039-01 20 30747829 30747829 G T TM9SF4 Missense_Mutation p.G535V 0.21 deleterious(0) probably_damaging(1) TCGA-39-5039-01 20 44004180 44004180 G A TP53TG5 Silent p.A89A 0.10 TCGA-39-5039-01 20 50769440 50769440 C T ZFP64 Missense_Mutation p.D431N 0.10 tolerated(0.12) benign(0.007) TCGA-39-5039-01 20 5294767 5294767 C A PROKR2 Missense_Mutation p.K83N 0.23 deleterious(0) probably_damaging(0.98) TCGA-39-5039-01 21 19770581 19770581 T A TMPRSS15 Missense_Mutation p.N71Y 0.20 deleterious(0.01) possibly_damaging(0.905) TCGA-39-5039-01 22 16256590 16256590 C A POTEH 3'UTR 0.05 TCGA-39-5039-01 22 18028975 18028975 C A CECR2 Nonsense_Mutation p.S1312* 0.31 TCGA-39-5039-01 22 18028976 18028976 A T CECR2 Silent p.S1312S 0.31 TCGA-39-5039-01 22 22385737 22385737 C T IGLV4-69 Missense_Mutation p.H76Y 0.21 tolerated(0.94) benign(0.005) TCGA-39-5039-01 22 38043285 38043285 T C SH3BP1 Missense_Mutation p.S350P 0.07 deleterious(0.02) probably_damaging(0.995) TCGA-39-5039-01 22 40814895 40814895 G A MKL1 Missense_Mutation p.A516V 0.41 tolerated(0.32) benign(0.003) TCGA-39-5039-01 22 40816853 40816853 T C MKL1 Silent p.P293P 0.25 TCGA-39-5039-01 2 113404520 113404520 G T SLC20A1 Missense_Mutation p.V39L 0.12 deleterious(0) probably_damaging(1) TCGA-39-5039-01 2 125530467 125530467 G T CNTNAP5 Missense_Mutation p.W874C 0.14 deleterious(0) probably_damaging(1) TCGA-39-5039-01 2 141773378 141773378 T G LRP1B Missense_Mutation p.K693Q 0.19 possibly_damaging(0.65) TCGA-39-5039-01 2 162830816 162830816 G A SLC4A10 Missense_Mutation p.G1073R 0.11 deleterious(0.04) possibly_damaging(0.801) TCGA-39-5039-01 2 168104476 168104476 A G XIRP2 Missense_Mutation p.T2192A 0.18 benign(0.004) TCGA-39-5039-01 2 172844237 172844237 C G HAT1 Nonsense_Mutation p.Y351* 0.16 TCGA-39-5039-01 2 179431690 179431690 G T TTN Missense_Mutation p.P26390Q 0.15 TCGA-39-5039-01 2 179590253 179590253 T A TTN Missense_Mutation p.E6893V 0.10 TCGA-39-5039-01 2 179621110 179621110 G A TTN Missense_Mutation p.A3698V 0.12 TCGA-39-5039-01 2 197208380 197208380 C A HECW2 Splice_Site p.X134_splice 0.05 TCGA-39-5039-01 2 206870222 206870222 C A INO80D Missense_Mutation p.A652S 0.09 deleterious(0) probably_damaging(0.999) TCGA-39-5039-01 2 224824686 224824686 C T MRPL44 Silent p.S205S 0.11 TCGA-39-5039-01 2 29379276 29379276 G T CLIP4 Missense_Mutation p.G408C 0.13 deleterious(0.01) possibly_damaging(0.469) TCGA-39-5039-01 2 37395021 37395021 A T SULT6B1 3'UTR 0.18 TCGA-39-5039-01 2 47612313 47612313 C G EPCAM Silent p.S289S 0.13 TCGA-39-5039-01 2 69569383 69569383 T A GFPT1 Splice_Site p.X369_splice 0.12 TCGA-39-5039-01 2 74867166 74867166 A - M1AP Frame_Shift_Del p.F79Lfs*4 0.15 TCGA-39-5039-01 2 95847693 95847693 G A ZNF2 Missense_Mutation p.E374K 0.11 deleterious(0.03) possibly_damaging(0.706) TCGA-39-5039-01 3 115394998 115394998 G C GAP43 Missense_Mutation p.D93H 0.04 deleterious(0.01) possibly_damaging(0.533) TCGA-39-5039-01 3 120122198 120122198 T A FSTL1 Silent p.G195G 0.20 TCGA-39-5039-01 3 129370615 129370615 C T TMCC1 Silent p.T557T 0.05 TCGA-39-5039-01 3 140285066 140285066 G T CLSTN2 Nonsense_Mutation p.E947* 0.29 TCGA-39-5039-01 3 142269086 142269086 T C ATR Missense_Mutation p.Q955R 0.13 tolerated(0.06) benign(0.014) TCGA-39-5039-01 3 142272128 142272128 C G ATR Missense_Mutation p.A916P 0.08 deleterious(0.02) possibly_damaging(0.905) TCGA-39-5039-01 3 14744711 14744711 G T C3orf20 Nonsense_Mutation p.E274* 0.14 TCGA-39-5039-01 3 148563352 148563352 C G CPB1 Missense_Mutation p.S307C 0.12 deleterious(0) probably_damaging(1) TCGA-39-5039-01 3 23934649 23934649 C G NKIRAS1 Missense_Mutation p.Q172H 0.16 deleterious(0.02) possibly_damaging(0.873) TCGA-39-5039-01 4 104082506 104082506 G T CENPE Missense_Mutation p.L651M 0.12 probably_damaging(0.947) TCGA-39-5039-01 4 177081166 177081166 G T WDR17 Missense_Mutation p.Q873H 0.09 deleterious(0.05) possibly_damaging(0.498) TCGA-39-5039-01 4 44683220 44683220 G - GUF1 Frame_Shift_Del 0.12 TCGA-39-5039-01 4 62679551 62679551 C T LPHN3 Missense_Mutation p.S407L 0.15 tolerated(0.05) benign(0.004) TCGA-39-5039-01 4 65274916 65274916 C A TECRL Missense_Mutation p.V52F 0.19 deleterious(0.03) benign(0.11) TCGA-39-5039-01 4 6588845 6588845 C G MAN2B2 Missense_Mutation p.L172V 0.04 tolerated(0.89) benign(0.034) TCGA-39-5039-01 4 72412222 72412222 A G SLC4A4 Silent p.E866E 0.16 TCGA-39-5039-01 4 89186283 89186283 T A PPM1K Missense_Mutation p.H286L 0.13 tolerated(0.06) benign(0.002) TCGA-39-5039-01 4 90816041 90816041 C T MMRN1 5'UTR 0.13 TCGA-39-5039-01 5 11732318 11732318 A T CTNND2 Nonsense_Mutation p.L35* 0.10 TCGA-39-5039-01 5 13870923 13870923 T C DNAH5 Missense_Mutation p.I1263V 0.14 benign(0.031) TCGA-39-5039-01 5 21842274 21842274 G C CDH12 Silent p.P270P 0.17 TCGA-39-5039-01 5 31983589 31983589 G A PDZD2 Missense_Mutation p.G269S 0.12 tolerated(0.08) possibly_damaging(0.599) TCGA-39-5039-01 5 33891861 33891861 G T ADAMTS12 Missense_Mutation p.P34Q 0.16 tolerated(0.27) benign(0.129) TCGA-39-5039-01 5 36608603 36608603 A G SLC1A3 Silent p.T26T 0.19 TCGA-39-5039-01 5 37169315 37169315 G C C5orf42 Missense_Mutation p.L2271V 0.13 tolerated(0.24) benign(0.035) TCGA-39-5039-01 5 40981570 40981570 C T C7 Silent p.N809N 0.24 TCGA-39-5039-01 5 5242297 5242297 C T ADAMTS16 Silent p.C885C 0.09 TCGA-39-5039-01 5 63256546 63256546 T C HTR1A Missense_Mutation p.K334R 0.15 tolerated(0.34) benign(0.232) TCGA-39-5039-01 5 7802424 7802424 G A ADCY2 Missense_Mutation p.E908K 0.21 deleterious(0.02) probably_damaging(0.956) TCGA-39-5039-01 5 96126064 96126064 G A ERAP1 Missense_Mutation p.P487S 0.30 tolerated(0.65) benign(0.037) TCGA-39-5039-01 6 100841640 100841640 G A SIM1 Silent p.D431D 0.12 TCGA-39-5039-01 6 121482134 121482134 C A TBC1D32 Missense_Mutation p.G880V 0.16 deleterious(0) probably_damaging(1) TCGA-39-5039-01 6 128411045 128411045 G A PTPRK Missense_Mutation p.R419C 0.12 deleterious(0) probably_damaging(0.991) TCGA-39-5039-01 6 160453653 160453653 G C IGF2R Missense_Mutation p.C318S 0.18 deleterious(0) possibly_damaging(0.779) TCGA-39-5039-01 6 25913469 25913469 A G SLC17A2 3'UTR 0.13 TCGA-39-5039-01 6 350767 350767 G C DUSP22 Intron 0.11 TCGA-39-5039-01 6 56006603 56006603 G A COL21A1 Missense_Mutation p.P508S 0.12 deleterious(0.04) benign(0.41) TCGA-39-5039-01 7 107600229 107600229 C A LAMB1 Nonsense_Mutation p.G789* 0.11 TCGA-39-5039-01 7 11468628 11468628 A C THSD7A Silent p.R1063R 0.13 TCGA-39-5039-01 7 122774500 122774500 G T SLC13A1 Missense_Mutation p.S299Y 0.10 deleterious(0) probably_damaging(0.988) TCGA-39-5039-01 7 128413743 128413743 C T OPN1SW Missense_Mutation p.C296Y 0.11 deleterious(0) probably_damaging(0.934) TCGA-39-5039-01 7 136700698 136700698 C A CHRM2 Silent p.A362A 0.10 TCGA-39-5039-01 7 142099914 142099914 C A TRBV7-8 Missense_Mutation p.V9L 0.12 tolerated(0.07) benign(0.071) TCGA-39-5039-01 7 142640001 142640001 C A KEL Missense_Mutation p.E634D 0.15 deleterious(0.02) possibly_damaging(0.558) TCGA-39-5039-01 7 150555107 150555107 C A AOC1 Missense_Mutation p.R517S 0.17 deleterious(0) probably_damaging(1) TCGA-39-5039-01 7 15458232 15458232 G A AGMO Missense_Mutation p.A187V 0.11 tolerated(0.33) benign(0.395) TCGA-39-5039-01 7 156619400 156619400 C A LMBR1 Missense_Mutation p.G73V 0.11 deleterious(0.01) probably_damaging(1) TCGA-39-5039-01 7 2472891 2472891 A G CHST12 Missense_Mutation p.H206R 0.12 tolerated(0.35) benign(0.004) TCGA-39-5039-01 7 31864552 31864552 C A PDE1C Missense_Mutation p.M505I 0.10 deleterious(0.02) probably_damaging(0.997) TCGA-39-5039-01 7 44042333 44042333 T A SPDYE1 Missense_Mutation p.L135Q 0.10 deleterious(0) probably_damaging(0.979) TCGA-39-5039-01 7 65557066 65557066 G T ASL Missense_Mutation p.R379L 0.21 deleterious(0.02) benign(0.087) TCGA-39-5039-01 7 91630612 91630612 G C AKAP9 Missense_Mutation p.E461Q 0.18 possibly_damaging(0.615) TCGA-39-5039-01 7 94039566 94039566 C A COL1A2 Missense_Mutation p.P350T 0.12 probably_damaging(0.995) TCGA-39-5039-01 8 104427175 104427175 G A DCAF13 5'UTR 0.27 TCGA-39-5039-01 8 104973360 104973360 A G RIMS2 Silent p.S923S 0.14 TCGA-39-5039-01 8 113253983 113253983 T A CSMD3 Missense_Mutation p.R3478S 0.11 tolerated(0.69) benign(0.008) TCGA-39-5039-01 8 143603331 143603331 G A BAI1 Silent p.V1010V 0.40 TCGA-39-5039-01 8 144621338 144621338 C T ZC3H3 Missense_Mutation p.G67R 0.13 deleterious(0.03) probably_damaging(1) TCGA-39-5039-01 8 22432219 22432219 G T SORBS3 Missense_Mutation p.G665V 0.18 deleterious(0) probably_damaging(0.997) TCGA-39-5039-01 8 59515778 59515778 A G NSMAF Missense_Mutation p.S377P 0.11 tolerated(0.49) benign(0.005) TCGA-39-5039-01 8 69021782 69021782 G A PREX2 Missense_Mutation p.D1024N 0.12 deleterious(0) probably_damaging(0.992) TCGA-39-5039-01 8 77619845 77619845 C A ZFHX4 Silent p.S885S 0.17 TCGA-39-5039-01 8 77764061 77764061 G A ZFHX4 Missense_Mutation p.G1635E 0.10 probably_damaging(0.969) TCGA-39-5039-01 9 104356955 104356955 G A PPP3R2 Silent p.S86S 0.25 TCGA-39-5039-01 9 131476641 131476641 C T PKN3 Missense_Mutation p.P493L 0.21 tolerated(0.12) benign(0.282) TCGA-39-5039-01 9 14775880 14775880 A G FREM1 Silent p.T1588T 0.14 TCGA-39-5039-01 9 21971082 21971082 G A CDKN2A Silent p.D92D 0.42 TCGA-39-5039-01 9 37746626 37746626 C G FRMPD1 Missense_Mutation p.Q1533E 0.23 tolerated(0.18) probably_damaging(0.993) TCGA-39-5039-01 9 40772779 40772779 C T ZNF658 Silent p.G832G 0.18 TCGA-39-5039-01 9 6553420 6553420 G A GLDC Missense_Mutation p.A802V 0.22 deleterious(0) possibly_damaging(0.642) TCGA-39-5039-01 9 93375424 93375424 T C DIRAS2 3'UTR 0.23 TCGA-39-5039-01 X 132161178 132161178 C T USP26 Silent p.K357K 0.28 TCGA-39-5039-01 X 135441478 135441478 C T GPR112 Silent p.A2336A 0.17 TCGA-39-5039-01 X 147062846 147062846 C A FMR1NB 5'Flank 0.31 TCGA-39-5039-01 X 152826170 152826170 C T ATP2B3 Missense_Mutation p.A959V 0.22 deleterious(0.05) probably_damaging(0.966) TCGA-39-5039-01 X 152826171 152826171 G C ATP2B3 Silent p.A959A 0.22 TCGA-39-5039-01 X 155149501 155149501 G T VAMP7 Intron 0.12 TCGA-39-5039-01 X 31893457 31893457 T C DMD Missense_Mutation p.I2316V 0.34 benign(0.068) TCGA-39-5039-01 X 5821841 5821841 G T NLGN4X Missense_Mutation p.P293Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-39-5039-01 X 601573 601573 G T SHOX Silent p.R168R 0.11 TCGA-39-5040-01 10 117704270 117704270 C T ATRNL1 Missense_Mutation p.R1374C 0.09 deleterious(0.03) possibly_damaging(0.543) TCGA-39-5040-01 10 11908631 11908631 G C PROSER2 Silent p.V80V 0.12 TCGA-39-5040-01 10 123954651 123954651 A G TACC2 Silent p.P1977P 0.29 TCGA-39-5040-01 10 126715655 126715655 C A CTBP2 Missense_Mutation p.R225I 0.50 deleterious_low_confidence(0) possibly_damaging(0.555) TCGA-39-5040-01 10 135038275 135038275 G A KNDC1 Missense_Mutation p.G1711S 0.22 tolerated(0.1) benign(0.126) TCGA-39-5040-01 10 135195128 135195129 - C PAOX Frame_Shift_Ins p.A280Gfs*14 0.14 TCGA-39-5040-01 10 18289674 18289674 G T SLC39A12 Missense_Mutation p.G560V 0.22 deleterious(0) probably_damaging(1) TCGA-39-5040-01 10 30317941 30317941 T C KIAA1462 Missense_Mutation p.K379R 0.50 tolerated(0.31) benign(0.076) TCGA-39-5040-01 10 30915079 30915079 G T LYZL2 Missense_Mutation p.R131S 0.54 tolerated(0.08) benign(0.004) TCGA-39-5040-01 10 33208918 33208918 T A ITGB1 Missense_Mutation p.E455V 0.36 tolerated(0.11) benign(0.046) TCGA-39-5040-01 10 34573132 34573132 C - PARD3 Frame_Shift_Del p.G1039Vfs*3 0.24 TCGA-39-5040-01 10 51818945 51818945 G A RP11-324H6.5 RNA 0.25 TCGA-39-5040-01 10 51818946 51818946 G T RP11-324H6.5 RNA 0.25 TCGA-39-5040-01 10 55568633 55568633 G A PCDH15 Missense_Mutation p.A660V 0.29 tolerated_low_confidence(0.23) unknown(0) TCGA-39-5040-01 10 64968299 64968299 C A JMJD1C Missense_Mutation p.G1044C 0.44 tolerated(0.09) benign(0.008) TCGA-39-5040-01 10 79397083 79397083 C T KCNMA1 Silent p.L106L 0.19 TCGA-39-5040-01 10 87615932 87615932 G C GRID1 Missense_Mutation p.L323V 0.24 tolerated(0.18) probably_damaging(0.999) TCGA-39-5040-01 10 88441356 88441356 G T LDB3 Missense_Mutation p.G162V 0.32 tolerated(0.18) benign(0.027) TCGA-39-5040-01 10 95892193 95892193 C A PLCE1 Missense_Mutation p.S490Y 0.39 deleterious_low_confidence(0) possibly_damaging(0.779) TCGA-39-5040-01 10 97154367 97154367 C T SORBS1 Splice_Site p.X454_splice 0.19 TCGA-39-5040-01 10 98741363 98741363 G A C10orf12 Silent p.E72E 0.46 TCGA-39-5040-01 11 103907734 103907734 G T DDI1 Missense_Mutation p.G62C 0.04 deleterious(0.05) possibly_damaging(0.852) TCGA-39-5040-01 11 104871091 104871091 C G CASP5 Silent p.P296P 0.40 TCGA-39-5040-01 11 109294492 109294508 ACCTGCATCACGCAGGT - C11orf87 Frame_Shift_Del p.T45Gfs*38 0.39 TCGA-39-5040-01 11 111749888 111749888 G T FDXACB1 5'UTR 0.21 TCGA-39-5040-01 11 11292714 11292714 C A GALNT18 Missense_Mutation p.V601F 0.45 tolerated(0.71) benign(0.01) TCGA-39-5040-01 11 113295326 113295326 C T DRD2 Silent p.Q16Q 0.16 TCGA-39-5040-01 11 1157921 1157921 G T MUC5AC Missense_Mutation p.G330C 0.12 deleterious(0.04) benign(0.075) TCGA-39-5040-01 11 116701503 116701503 G T APOC3 Nonsense_Mutation p.E24* 0.38 TCGA-39-5040-01 11 119031368 119031368 T A ABCG4 Splice_Site p.X572_splice 0.41 TCGA-39-5040-01 11 120117192 120117192 G C POU2F3 Silent p.T23T 0.20 TCGA-39-5040-01 11 121028618 121028618 G T TECTA Missense_Mutation p.Q1458H 0.43 deleterious(0.03) probably_damaging(0.994) TCGA-39-5040-01 11 121028620 121028620 G T TECTA Missense_Mutation p.C1459F 0.43 deleterious(0) probably_damaging(0.957) TCGA-39-5040-01 11 121028765 121028765 C A TECTA Silent p.A1507A 0.40 TCGA-39-5040-01 11 1217679 1217679 G C MUC5AC RNA 0.29 TCGA-39-5040-01 11 123755276 123755276 G T TMEM225 Silent p.I83I 0.38 TCGA-39-5040-01 11 124766476 124766476 T A ROBO4 Missense_Mutation p.H164L 0.38 tolerated(0.63) benign(0.007) TCGA-39-5040-01 11 133402160 133402160 T C OPCML Silent p.P20P 0.33 TCGA-39-5040-01 11 134022738 134022738 C A NCAPD3 3'UTR 0.34 TCGA-39-5040-01 11 18029562 18029562 T G SERGEF Missense_Mutation p.Q41P 0.25 tolerated(0.18) possibly_damaging(0.611) TCGA-39-5040-01 11 18764887 18764887 C A PTPN5 Silent p.L127L 0.17 TCGA-39-5040-01 11 1958223 1958223 G T TNNT3 Missense_Mutation p.A238S 0.27 tolerated(0.4) benign(0.209) TCGA-39-5040-01 11 30915816 30915816 C A DCDC1 Missense_Mutation p.M1624I 0.21 tolerated(0.44) benign(0.043) TCGA-39-5040-01 11 30915817 30915817 A T DCDC1 Missense_Mutation p.M1624K 0.21 tolerated(0.19) benign(0.092) TCGA-39-5040-01 11 31815271 31815271 G T PAX6 Missense_Mutation p.P296H 0.18 deleterious(0) benign(0.345) TCGA-39-5040-01 11 36597528 36597528 A G RAG1 Missense_Mutation p.M892V 0.25 deleterious_low_confidence(0) possibly_damaging(0.685) TCGA-39-5040-01 11 4661681 4661681 G T OR51D1 Missense_Mutation p.G221C 0.16 deleterious(0) probably_damaging(1) TCGA-39-5040-01 11 55110905 55110905 C A OR4A16 Missense_Mutation p.P77T 0.25 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-39-5040-01 11 55873370 55873370 G A OR8H2 Silent p.V284V 0.23 TCGA-39-5040-01 11 55945008 55945008 A G OR5J2 Missense_Mutation p.I305M 0.21 tolerated(0.23) benign(0.007) TCGA-39-5040-01 11 56431884 56431884 C A OR5AR1 Nonsense_Mutation p.C241* 0.38 TCGA-39-5040-01 11 58170417 58170417 T A OR5B3 Missense_Mutation p.I156F 0.21 tolerated_low_confidence(0.11) benign(0.03) TCGA-39-5040-01 11 60075648 60075648 T A MS4A4A Silent p.V239V 0.40 TCGA-39-5040-01 11 60781003 60781003 C A CD6 Missense_Mutation p.A420D 0.18 deleterious(0) possibly_damaging(0.786) TCGA-39-5040-01 11 61549291 61549291 A G MYRF Missense_Mutation p.Q1004R 0.19 tolerated(0.44) benign(0.003) TCGA-39-5040-01 11 619562 619562 C T CDHR5 Missense_Mutation p.R402Q 0.12 tolerated(0.21) probably_damaging(0.947) TCGA-39-5040-01 11 62985158 62985158 C G SLC22A25 Missense_Mutation p.V186L 0.38 tolerated(0.35) benign(0.012) TCGA-39-5040-01 11 63278571 63278571 C T LGALS12 Silent p.P207P 0.06 TCGA-39-5040-01 11 66188801 66188801 C A NPAS4 Missense_Mutation p.R51S 0.42 deleterious(0) probably_damaging(0.999) TCGA-39-5040-01 11 6817026 6817026 G T OR6A2 5'UTR 0.40 TCGA-39-5040-01 11 700638 700638 C T TMEM80 Missense_Mutation p.R78C 0.27 deleterious(0.04) possibly_damaging(0.767) TCGA-39-5040-01 11 7021233 7021233 T C ZNF214 Missense_Mutation p.K561E 0.08 deleterious(0) possibly_damaging(0.725) TCGA-39-5040-01 11 73997365 73997365 C T P4HA3 Missense_Mutation p.V281M 0.46 tolerated(0.18) benign(0.002) TCGA-39-5040-01 11 8008861 8008861 G T EIF3F 5'UTR 0.43 TCGA-39-5040-01 11 93468353 93468353 A T KIAA1731 3'Flank 0.17 TCGA-39-5040-01 11 95826183 95826183 C G MAML2 Missense_Mutation p.D338H 0.22 probably_damaging(0.956) TCGA-39-5040-01 12 100043148 100043148 C - FAM71C Frame_Shift_Del p.Y234Ifs*6 0.24 TCGA-39-5040-01 12 101587526 101587527 - G SLC5A8 Frame_Shift_Ins p.V190Afs*31 0.28 TCGA-39-5040-01 12 106977059 106977059 A G RP11-144F15.1 Intron 0.36 TCGA-39-5040-01 12 109017498 109017498 G C SELPLG Missense_Mutation p.P212A 0.25 tolerated(0.06) unknown(0) TCGA-39-5040-01 12 109863788 109863788 T C MYO1H Missense_Mutation p.L572P 0.28 deleterious(0) possibly_damaging(0.898) TCGA-39-5040-01 12 113496163 113496163 G A DTX1 Missense_Mutation p.A56T 0.19 tolerated(0.17) benign(0.305) TCGA-39-5040-01 12 113835123 113835123 A - SDS Frame_Shift_Del p.V167Gfs*59 0.34 TCGA-39-5040-01 12 116446350 116446350 G A MED13L Missense_Mutation p.P623L 0.07 tolerated(0.87) unknown(0) TCGA-39-5040-01 12 117660636 117660636 C A NOS1 Missense_Mutation p.G1321W 0.49 deleterious(0) probably_damaging(1) TCGA-39-5040-01 12 124856568 124856568 C A NCOR2 Missense_Mutation p.R936L 0.38 probably_damaging(0.966) TCGA-39-5040-01 12 125396635 125396635 C G UBC Missense_Mutation p.K561N 0.28 deleterious(0) probably_damaging(0.911) TCGA-39-5040-01 12 125465128 125465128 C T DHX37 Missense_Mutation p.V216I 0.09 tolerated(0.21) benign(0.008) TCGA-39-5040-01 12 15661536 15661536 C G PTPRO Silent p.T433T 0.31 TCGA-39-5040-01 12 15733636 15733636 C A PTPRO Nonsense_Mutation p.Y1001* 0.25 TCGA-39-5040-01 12 18237472 18237472 G T RERGL Missense_Mutation p.P105Q 0.34 tolerated(0.16) possibly_damaging(0.53) TCGA-39-5040-01 12 18793468 18793468 G T PIK3C2G Missense_Mutation p.D1389Y 0.39 deleterious(0) possibly_damaging(0.897) TCGA-39-5040-01 12 20774281 20774281 C A PDE3A Silent p.S492S 0.34 TCGA-39-5040-01 12 21331617 21331617 G C SLCO1B1 Missense_Mutation p.D197H 0.11 deleterious(0) probably_damaging(1) TCGA-39-5040-01 12 300202 300202 G T SLC6A12 3'UTR 0.42 TCGA-39-5040-01 12 40653354 40653355 - T LRRK2 Frame_Shift_Ins p.L498Ffs*32 0.15 TCGA-39-5040-01 12 5154531 5154531 G T KCNA5 Silent p.R406R 0.24 TCGA-39-5040-01 12 52710372 52710372 C G KRT83 Missense_Mutation p.E307D 0.15 deleterious(0.01) probably_damaging(0.98) TCGA-39-5040-01 12 52986727 52986727 C T KRT72 Silent p.V217V 0.21 TCGA-39-5040-01 12 53186029 53186029 C A KRT3 Missense_Mutation p.Q394H 0.10 deleterious(0.02) possibly_damaging(0.599) TCGA-39-5040-01 12 53454927 53454927 G T TENC1 Silent p.L1089L 0.47 TCGA-39-5040-01 12 53687150 53687151 - G ESPL1 Frame_Shift_Ins p.A2087Gfs*66 0.12 TCGA-39-5040-01 12 54379362 54379362 G A HOXC10 Missense_Mutation p.E107K 0.51 deleterious(0) probably_damaging(0.984) TCGA-39-5040-01 12 55688587 55688587 G T OR6C6 Missense_Mutation p.L144I 0.40 tolerated_low_confidence(0.22) benign(0.077) TCGA-39-5040-01 12 56077908 56077908 C T METTL7B 3'UTR 0.28 TCGA-39-5040-01 12 57441521 57441521 T A MYO1A Intron 0.22 TCGA-39-5040-01 12 675184 675184 G T NINJ2 Missense_Mutation p.T111N 0.20 deleterious(0.04) possibly_damaging(0.857) TCGA-39-5040-01 12 6858120 6858120 C T MLF2 Nonsense_Mutation p.W196* 0.28 TCGA-39-5040-01 12 6933262 6933262 C A GPR162 Silent p.P66P 0.32 TCGA-39-5040-01 12 70049481 70049481 G T BEST3 Missense_Mutation p.P405T 0.16 deleterious(0.01) possibly_damaging(0.517) TCGA-39-5040-01 12 72314519 72314519 G T TBC1D15 Missense_Mutation p.W553C 0.19 deleterious(0) probably_damaging(1) TCGA-39-5040-01 12 7241964 7241964 G T C1R Silent p.T230T 0.29 TCGA-39-5040-01 12 78513469 78513469 A T NAV3 Missense_Mutation p.N1165Y 0.25 deleterious(0.01) probably_damaging(0.987) TCGA-39-5040-01 12 91347857 91347857 C T CCER1 Silent p.V221V 0.22 TCGA-39-5040-01 12 9307297 9307298 - T PZP Frame_Shift_Ins p.T1230Nfs*10 0.36 TCGA-39-5040-01 12 94563050 94563050 G C PLXNC1 Missense_Mutation p.G395A 0.30 tolerated(0.15) benign(0.122) TCGA-39-5040-01 12 97330475 97330475 G T NEDD1 Missense_Mutation p.R276L 0.43 deleterious(0) probably_damaging(0.991) TCGA-39-5040-01 13 101720338 101720338 G C NALCN Missense_Mutation p.Q1460E 0.70 deleterious(0.01) benign(0.379) TCGA-39-5040-01 13 101997771 101997771 C A NALCN Silent p.G215G 0.58 TCGA-39-5040-01 13 102345044 102345044 C G ITGBL1 Silent p.V375V 0.18 TCGA-39-5040-01 13 111279892 111279892 C T CARKD Nonsense_Mutation p.Q165* 0.61 TCGA-39-5040-01 13 111367893 111367893 C G ING1 Missense_Mutation p.R35G 0.07 deleterious_low_confidence(0.01) benign(0) TCGA-39-5040-01 13 113773379 113773379 C A F7 3'UTR 0.63 TCGA-39-5040-01 13 21557822 21557822 C A LATS2 Missense_Mutation p.G675W 0.66 deleterious(0) probably_damaging(1) TCGA-39-5040-01 13 23905000 23905000 C A SACS Missense_Mutation p.D4339Y 0.48 probably_damaging(0.997) TCGA-39-5040-01 13 23905596 23905596 C T SACS Missense_Mutation p.G4140E 0.57 probably_damaging(0.999) TCGA-39-5040-01 13 25840275 25840275 C G MTMR6 Missense_Mutation p.D152H 0.61 tolerated(0.05) benign(0.048) TCGA-39-5040-01 13 27255418 27255418 G T WASF3 Missense_Mutation p.G315V 0.61 tolerated(0.29) possibly_damaging(0.642) TCGA-39-5040-01 13 40261853 40261853 G T COG6 Missense_Mutation p.G309V 0.52 deleterious(0) probably_damaging(0.999) TCGA-39-5040-01 13 40261854 40261854 A T COG6 Silent p.G309G 0.55 TCGA-39-5040-01 13 46952114 46952114 G T KIAA0226L 5'UTR 0.67 TCGA-39-5040-01 13 52548608 52548608 C A ATP7B Missense_Mutation p.G250W 0.56 deleterious(0.03) possibly_damaging(0.75) TCGA-39-5040-01 13 53420812 53420812 G A PCDH8 Missense_Mutation p.P587L 0.67 deleterious(0) possibly_damaging(0.633) TCGA-39-5040-01 13 72255946 72255946 A T DACH1 Silent p.P317P 0.61 TCGA-39-5040-01 13 79911362 79911362 G A RBM26 Nonsense_Mutation p.R843* 0.10 TCGA-39-5040-01 14 102816292 102816292 G A CINP Missense_Mutation p.P149S 0.66 tolerated(0.35) possibly_damaging(0.487) TCGA-39-5040-01 14 105477551 105477551 A G CDCA4 Missense_Mutation p.V239A 0.24 deleterious(0) probably_damaging(0.994) TCGA-39-5040-01 14 106066376 106066376 C A IGHE 3'UTR 0.27 TCGA-39-5040-01 14 106963115 106963115 A T IGHV1-45 Missense_Mutation p.V56E 0.56 deleterious(0) possibly_damaging(0.706) TCGA-39-5040-01 14 24567862 24567862 C T PCK2 Silent p.S213S 0.53 TCGA-39-5040-01 14 32562656 32562656 A T ARHGAP5 Missense_Mutation p.Q927H 0.59 deleterious(0.04) possibly_damaging(0.887) TCGA-39-5040-01 14 58599958 58599958 T G C14orf37 Missense_Mutation p.S491R 0.60 tolerated(0.16) benign(0.017) TCGA-39-5040-01 14 65253668 65253668 G T SPTB Silent p.A1005A 0.55 TCGA-39-5040-01 14 94066921 94066921 T G UNC79 Missense_Mutation p.C950G 0.24 deleterious(0) probably_damaging(0.997) TCGA-39-5040-01 15 20666536 20666536 G T HERC2P3 RNA 0.18 TCGA-39-5040-01 15 22368624 22368624 C A OR4M2 Missense_Mutation p.L17I 0.22 deleterious(0.03) probably_damaging(0.994) TCGA-39-5040-01 15 22382721 22382721 G T OR4N4 Silent p.V83V 0.12 TCGA-39-5040-01 15 31294269 31294269 A T TRPM1 Missense_Mutation p.L1562Q 0.61 deleterious_low_confidence(0.01) benign(0.352) TCGA-39-5040-01 15 37391540 37391540 C A MEIS2 Intron 0.53 TCGA-39-5040-01 15 42178118 42178118 T G SPTBN5 Silent p.A445A 0.23 TCGA-39-5040-01 15 44816319 44816319 C T CTDSPL2 Nonsense_Mutation p.R450* 0.18 TCGA-39-5040-01 15 53992072 53992072 T C WDR72 Missense_Mutation p.K547R 0.59 tolerated(1) benign(0.035) TCGA-39-5040-01 15 72699042 72699042 G - TMEM202 Frame_Shift_Del p.S146Tfs*2 0.36 TCGA-39-5040-01 15 78471147 78471147 C A ACSBG1 Missense_Mutation p.R504L 0.56 tolerated(0.2) benign(0.023) TCGA-39-5040-01 15 79750445 79750445 G T KIAA1024 Missense_Mutation p.E652D 0.58 tolerated(0.27) benign(0.003) TCGA-39-5040-01 15 79750472 79750472 C T KIAA1024 Silent p.P661P 0.57 TCGA-39-5040-01 15 93467737 93467737 A G CHD2 Silent p.K83K 0.24 TCGA-39-5040-01 16 16276434 16276434 G - ABCC6 Frame_Shift_Del p.Y695Tfs*14 0.42 TCGA-39-5040-01 16 20702432 20702432 G C ACSM1 Missense_Mutation p.L27V 0.58 tolerated(0.16) benign(0.035) TCGA-39-5040-01 16 2814727 2814727 C A SRRM2 Missense_Mutation p.Q1400K 0.08 unknown(0) TCGA-39-5040-01 16 28508015 28508015 G A APOBR Nonsense_Mutation p.W551* 0.44 TCGA-39-5040-01 16 2905590 2905590 T - PRSS22 Frame_Shift_Del p.S182Afs*17 0.44 TCGA-39-5040-01 16 3614526 3614526 G A NLRC3 Missense_Mutation p.P185S 0.44 deleterious(0.02) probably_damaging(0.978) TCGA-39-5040-01 16 3633239 3633239 T C SLX4 Missense_Mutation p.H1671R 0.54 tolerated(0.38) benign(0.001) TCGA-39-5040-01 16 4411025 4411025 C A CORO7 Silent p.S612S 0.54 TCGA-39-5040-01 16 47117642 47117642 C A NETO2 Silent p.G356G 0.58 TCGA-39-5040-01 16 50785700 50785700 G C CYLD Missense_Mutation p.L230F 0.33 tolerated(0.17) probably_damaging(0.999) TCGA-39-5040-01 16 51171442 51171442 A T SALL1 Missense_Mutation p.W1186R 0.47 deleterious(0) benign(0.424) TCGA-39-5040-01 16 737224 737224 G C WDR24 Silent p.R284R 0.58 TCGA-39-5040-01 16 84212796 84212796 G A TAF1C Silent p.P787P 0.89 TCGA-39-5040-01 16 88871005 88871005 C T CDT1 Missense_Mutation p.P94L 0.70 tolerated(0.52) benign(0.001) TCGA-39-5040-01 17 12893430 12893430 G C ARHGAP44 Missense_Mutation p.R800P 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.512) TCGA-39-5040-01 17 15989645 15989645 G A NCOR1 Missense_Mutation p.T1043I 0.29 possibly_damaging(0.528) TCGA-39-5040-01 17 2381028 2381028 C A METTL16 Missense_Mutation p.G94C 0.53 deleterious(0) probably_damaging(0.972) TCGA-39-5040-01 17 27047576 27047576 G C RPL23A Intron 0.11 TCGA-39-5040-01 17 29483067 29483067 C T NF1 Silent p.L43L 0.34 TCGA-39-5040-01 17 33521055 33521055 C T SLC35G3 Missense_Mutation p.G91D 0.03 tolerated(0.2) probably_damaging(0.991) TCGA-39-5040-01 17 3493571 3493571 G C SHPK Silent p.T240T 0.09 TCGA-39-5040-01 17 39637165 39637165 C A KRT35 Missense_Mutation p.R62M 0.31 tolerated(0.22) possibly_damaging(0.491) TCGA-39-5040-01 17 41166208 41166208 G C IFI35 Silent p.L253L 0.13 TCGA-39-5040-01 17 42334897 42334897 C A SLC4A1 Missense_Mutation p.G483C 0.23 deleterious(0) possibly_damaging(0.865) TCGA-39-5040-01 17 48546084 48546084 T G CHAD Missense_Mutation p.S31R 0.12 tolerated(0.13) benign(0.004) TCGA-39-5040-01 17 57334572 57334572 A G GDPD1 Missense_Mutation p.K153E 0.39 deleterious(0) probably_damaging(0.98) TCGA-39-5040-01 17 65989353 65989353 T G C17orf58 Splice_Site 0.30 TCGA-39-5040-01 17 67170489 67170489 T A ABCA10 Missense_Mutation p.Y1032F 0.06 deleterious(0.04) probably_damaging(0.997) TCGA-39-5040-01 17 68171829 68171829 C A KCNJ2 Missense_Mutation p.L217I 0.30 deleterious(0) possibly_damaging(0.892) TCGA-39-5040-01 17 74005844 74005844 G A EVPL Missense_Mutation p.L1148F 0.23 deleterious(0) probably_damaging(0.999) TCGA-39-5040-01 17 7579312 7579312 C A TP53 Silent p.T125T 0.54 TCGA-39-5040-01 17 7796822 7796822 C T CHD3 Missense_Mutation p.P302L 0.53 benign(0.307) TCGA-39-5040-01 17 78014016 78014016 G A CCDC40 Missense_Mutation p.G167S 0.20 tolerated(0.29) benign(0.009) TCGA-39-5040-01 17 78797051 78797051 C T RPTOR Intron 0.44 TCGA-39-5040-01 17 80606161 80606161 T A WDR45B Missense_Mutation p.N19I 0.24 deleterious(0) probably_damaging(1) TCGA-39-5040-01 17 8701710 8701710 C T MFSD6L Silent p.R243R 0.45 TCGA-39-5040-01 18 13885604 13885604 T C MC2R 5'UTR 0.56 TCGA-39-5040-01 18 19426916 19426916 A G MIB1 Silent p.G741G 0.36 TCGA-39-5040-01 18 29867755 29867756 - A GAREM Frame_Shift_Ins p.H269Sfs*4 0.26 TCGA-39-5040-01 18 32443999 32443999 G T DTNA Missense_Mutation p.Q485H 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-39-5040-01 18 357425 357425 G A COLEC12 Silent p.I52I 0.22 TCGA-39-5040-01 18 54814855 54814855 G T BOD1L2 Missense_Mutation p.Q104H 0.37 deleterious(0.01) benign(0.304) TCGA-39-5040-01 18 56205095 56205095 G T ALPK2 Missense_Mutation p.S775Y 0.41 tolerated(0.19) benign(0.272) TCGA-39-5040-01 18 61652467 61652467 G T SERPINB8 Silent p.T236T 0.30 TCGA-39-5040-01 18 66504496 66504496 G T CCDC102B Nonsense_Mutation p.E166* 0.33 TCGA-39-5040-01 18 74074396 74074396 C A ZNF516 3'UTR 0.27 TCGA-39-5040-01 18 74154033 74154033 C A ZNF516 Silent p.V326V 0.26 TCGA-39-5040-01 18 76753569 76753569 G C SALL3 Silent p.V526V 0.24 TCGA-39-5040-01 18 9256445 9256445 A G ANKRD12 Silent p.S1060S 0.09 TCGA-39-5040-01 19 10107129 10107129 C T COL5A3 Missense_Mutation p.A468T 0.19 unknown(0) TCGA-39-5040-01 19 11141427 11141427 G C SMARCA4 Missense_Mutation p.R1135P 0.40 probably_damaging(1) TCGA-39-5040-01 19 15052584 15052584 C G OR7C2 Missense_Mutation p.A95G 0.57 tolerated_low_confidence(0.1) benign(0.02) TCGA-39-5040-01 19 15291039 15291039 C A NOTCH3 Silent p.A1057A 0.64 TCGA-39-5040-01 19 17678341 17678341 A G COLGALT1 Missense_Mutation p.T206A 0.22 deleterious(0.02) benign(0.096) TCGA-39-5040-01 19 19752670 19752670 C T GMIP Missense_Mutation p.E63K 0.38 tolerated(0.1) benign(0.054) TCGA-39-5040-01 19 20117507 20117507 C G ZNF682 Missense_Mutation p.W268C 0.31 tolerated(0.22) possibly_damaging(0.707) TCGA-39-5040-01 19 23159540 23159540 G A ZNF728 Missense_Mutation p.S200F 0.32 tolerated(0.44) benign(0.023) TCGA-39-5040-01 19 30935586 30935586 C A ZNF536 Missense_Mutation p.H373N 0.07 deleterious(0) probably_damaging(0.996) TCGA-39-5040-01 19 31040272 31040272 C A ZNF536 Missense_Mutation p.P1249Q 0.42 deleterious_low_confidence(0.04) benign(0.265) TCGA-39-5040-01 19 33350812 33350812 T G SLC7A9 Missense_Mutation p.M270L 0.28 deleterious(0.01) benign(0.016) TCGA-39-5040-01 19 33696965 33696965 G T LRP3 Missense_Mutation p.C430F 0.33 deleterious(0) probably_damaging(0.991) TCGA-39-5040-01 19 36053501 36053501 C T ATP4A Missense_Mutation p.D86N 0.36 tolerated(0.08) probably_damaging(0.997) TCGA-39-5040-01 19 36674413 36674413 G A ZNF565 Missense_Mutation p.T152M 0.10 deleterious(0.01) benign(0.096) TCGA-39-5040-01 19 38876325 38876325 C G GGN Missense_Mutation p.R526P 0.09 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-39-5040-01 19 38976782 38976782 C A RYR1 Silent p.P1829P 0.15 TCGA-39-5040-01 19 40928953 40928953 G A SERTAD1 Silent p.D167D 0.23 TCGA-39-5040-01 19 41025854 41025854 G T SPTBN4 Silent p.V1150V 0.21 TCGA-39-5040-01 19 4216918 4216918 G C ANKRD24 Silent p.T587T 0.38 TCGA-39-5040-01 19 43376124 43376124 G T PSG1 Silent p.T168T 0.31 TCGA-39-5040-01 19 43376125 43376125 G T PSG1 Missense_Mutation p.T168N 0.31 deleterious(0.04) benign(0.034) TCGA-39-5040-01 19 44301831 44301831 G T LYPD5 Missense_Mutation p.T223N 0.22 tolerated(0.41) benign(0.007) TCGA-39-5040-01 19 44591188 44591188 A T ZNF284 Silent p.G519G 0.39 TCGA-39-5040-01 19 48925171 48925171 G T GRIN2D Missense_Mutation p.V741L 0.12 deleterious(0.02) probably_damaging(0.996) TCGA-39-5040-01 19 51129172 51129172 C A SYT3 Missense_Mutation p.D462Y 0.21 deleterious(0) probably_damaging(0.991) TCGA-39-5040-01 19 51297044 51297044 G A ACPT Missense_Mutation p.R250Q 0.25 tolerated(0.33) benign(0.043) TCGA-39-5040-01 19 51728615 51728615 G T CD33 Missense_Mutation p.W60L 0.35 deleterious(0) probably_damaging(1) TCGA-39-5040-01 19 52004733 52004733 C A SIGLEC12 Silent p.V85V 0.40 TCGA-39-5040-01 19 52023287 52023287 G A SIGLEC6 3'UTR 0.29 TCGA-39-5040-01 19 52496228 52496228 T C ZNF615 Missense_Mutation p.K712E 0.32 tolerated(0.09) benign(0.1) TCGA-39-5040-01 19 52497584 52497584 C A ZNF615 Missense_Mutation p.D260Y 0.25 deleterious(0.04) benign(0.26) TCGA-39-5040-01 19 52794143 52794143 A T ZNF766 Nonsense_Mutation p.K367* 0.44 TCGA-39-5040-01 19 54967943 54967943 G T LENG8 Missense_Mutation p.R525L 0.45 deleterious(0.02) probably_damaging(0.979) TCGA-39-5040-01 19 54969503 54969503 G A LENG8 Silent p.T681T 0.04 TCGA-39-5040-01 19 56370082 56370082 C T NLRP4 Silent p.Y441Y 0.20 TCGA-39-5040-01 19 58187450 58187450 C A ZSCAN4 5'UTR 0.69 TCGA-39-5040-01 19 58639354 58639354 C A ZNF329 Missense_Mutation p.S506I 0.57 deleterious(0) benign(0.235) TCGA-39-5040-01 19 58904546 58904546 A T RPS5 Silent p.T104T 0.16 TCGA-39-5040-01 19 5997179 5997179 G A RFX2 Silent p.F635F 0.09 TCGA-39-5040-01 19 757891 757891 G A MISP Silent p.Q315Q 0.76 TCGA-39-5040-01 19 757892 757892 G T MISP Missense_Mutation p.A316S 0.77 tolerated(0.2) benign(0.132) TCGA-39-5040-01 19 7806407 7806407 G T CD209 3'UTR 0.65 TCGA-39-5040-01 19 9082911 9082911 A T MUC16 Silent p.P2968P 0.59 TCGA-39-5040-01 1 103412404 103412404 C G COL11A1 Splice_Site p.X1092_splice 0.32 TCGA-39-5040-01 1 10405970 10405970 C T KIF1B Silent p.L1206L 0.51 TCGA-39-5040-01 1 104114823 104114823 G T AMY2B Missense_Mutation p.R87I 0.24 deleterious(0) probably_damaging(0.997) TCGA-39-5040-01 1 104115760 104115760 G C AMY2B Missense_Mutation p.G131R 0.33 deleterious(0.01) benign(0.174) TCGA-39-5040-01 1 115223038 115223038 G A AMPD1 Silent p.N236N 0.40 TCGA-39-5040-01 1 11562886 11562886 G T PTCHD2 Missense_Mutation p.E416D 0.19 tolerated(0.49) benign(0.083) TCGA-39-5040-01 1 14059338 14059338 A G PRDM2 Silent p.K64K 0.30 TCGA-39-5040-01 1 151259083 151259083 G T ZNF687 Missense_Mutation p.G106W 0.49 deleterious(0) possibly_damaging(0.735) TCGA-39-5040-01 1 152286063 152286063 G T FLG Missense_Mutation p.D433E 0.18 possibly_damaging(0.694) TCGA-39-5040-01 1 153409678 153409678 G A S100A7L2 Silent p.Y65Y 0.21 TCGA-39-5040-01 1 153906046 153906046 C G DENND4B Silent p.L1081L 0.27 TCGA-39-5040-01 1 156552160 156552160 G T TTC24 Missense_Mutation p.A282S 0.15 deleterious(0) possibly_damaging(0.874) TCGA-39-5040-01 1 157738298 157738298 T A FCRL2 Silent p.P263P 0.04 TCGA-39-5040-01 1 158435699 158435699 A T OR10K1 Silent p.A116A 0.13 TCGA-39-5040-01 1 159275888 159275888 G T FCER1A Missense_Mutation p.D148Y 0.65 deleterious(0) probably_damaging(0.976) TCGA-39-5040-01 1 161789581 161789581 G T ATF6 Missense_Mutation p.K356N 0.08 deleterious(0) probably_damaging(0.98) TCGA-39-5040-01 1 16381947 16381947 G T CLCNKB Missense_Mutation p.G592C 0.24 deleterious(0) probably_damaging(1) TCGA-39-5040-01 1 165182966 165182966 C A LMX1A Missense_Mutation p.R194L 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-39-5040-01 1 167023648 167023648 T A GPA33 Missense_Mutation p.R295W 0.23 deleterious(0.05) benign(0.001) TCGA-39-5040-01 1 167023649 167023649 C A GPA33 Missense_Mutation p.E294D 0.23 tolerated(0.49) benign(0.003) TCGA-39-5040-01 1 169515772 169515774 CAG - F5 In_Frame_Del p.S556_W557delinsR 0.20 TCGA-39-5040-01 1 169524449 169524449 A G F5 Silent p.Y363Y 0.28 TCGA-39-5040-01 1 171173095 171173095 G A FMO2 Missense_Mutation p.R240H 0.18 tolerated(0.66) benign(0.384) TCGA-39-5040-01 1 171174602 171174602 C A FMO2 Missense_Mutation p.L338I 0.15 deleterious(0.03) possibly_damaging(0.876) TCGA-39-5040-01 1 17292595 17292595 G T CROCC Silent p.A1559A 0.36 TCGA-39-5040-01 1 173726214 173726214 G T KLHL20 Missense_Mutation p.C356F 0.60 deleterious(0) probably_damaging(0.992) TCGA-39-5040-01 1 17413022 17413022 C T PADI2 Missense_Mutation p.M276I 0.08 tolerated(0.43) benign(0.001) TCGA-39-5040-01 1 175053023 175053023 G T TNN Missense_Mutation p.V396F 0.69 deleterious(0.01) probably_damaging(0.969) TCGA-39-5040-01 1 175336407 175336407 C A TNR Missense_Mutation p.V664F 0.54 deleterious(0.01) benign(0.038) TCGA-39-5040-01 1 176153815 176153815 C G RFWD2 Missense_Mutation p.D141H 0.53 tolerated(0.05) possibly_damaging(0.868) TCGA-39-5040-01 1 181702648 181702648 G T CACNA1E Silent p.L1008L 0.17 TCGA-39-5040-01 1 181762860 181762860 T A CACNA1E Silent p.P1986P 0.23 TCGA-39-5040-01 1 186282822 186282822 A G PRG4 Missense_Mutation p.Y1376C 0.52 unknown(0) TCGA-39-5040-01 1 196796107 196796107 G T CFHR1 Missense_Mutation p.W134C 0.55 deleterious(0) probably_damaging(0.997) TCGA-39-5040-01 1 197026480 197026480 C T F13B Silent p.E307E 0.16 TCGA-39-5040-01 1 197391053 197391053 C T CRB1 Missense_Mutation p.H699Y 0.32 tolerated(1) benign(0.002) TCGA-39-5040-01 1 201035381 201035381 G C CACNA1S Silent p.A907A 0.56 TCGA-39-5040-01 1 201185635 201185635 G T IGFN1 Missense_Mutation p.G3117C 0.16 probably_damaging(0.998) TCGA-39-5040-01 1 201282382 201282382 G T PKP1 Missense_Mutation p.R132L 0.64 tolerated(0.35) benign(0.178) TCGA-39-5040-01 1 203025246 203025246 A T PPFIA4 Splice_Site p.X185_splice 0.20 TCGA-39-5040-01 1 205034336 205034336 C A CNTN2 Missense_Mutation p.D547E 0.50 deleterious(0.01) benign(0.106) TCGA-39-5040-01 1 205065903 205065903 C A RBBP5 Nonsense_Mutation p.E435* 0.21 TCGA-39-5040-01 1 205495578 205495602 TTTGAGTACCTGGTGAGAGTCCGGC - CDK18 Splice_Site p.X249_splice 0.14 TCGA-39-5040-01 1 20810159 20810159 C A CAMK2N1 Missense_Mutation p.A74S 0.45 tolerated_low_confidence(1) benign(0.03) TCGA-39-5040-01 1 213161973 213161973 G A VASH2 3'UTR 0.68 TCGA-39-5040-01 1 214169962 214169962 G C PROX1 Silent p.G28G 0.61 TCGA-39-5040-01 1 214815086 214815086 A T CENPF Missense_Mutation p.L1135F 0.73 probably_damaging(0.989) TCGA-39-5040-01 1 216595506 216595506 C T USH2A Missense_Mutation p.C58Y 0.15 probably_damaging(0.999) TCGA-39-5040-01 1 22214080 22214080 C T HSPG2 Missense_Mutation p.R264Q 0.19 benign(0) TCGA-39-5040-01 1 224318282 224318282 A T FBXO28 Missense_Mutation p.R126W 0.51 deleterious(0) possibly_damaging(0.908) TCGA-39-5040-01 1 226485492 226485492 C A LIN9 Missense_Mutation p.W45C 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.747) TCGA-39-5040-01 1 230883228 230883232 TTCCA - CAPN9 5'UTR 0.19 TCGA-39-5040-01 1 237057782 237057782 G A MTR Silent p.L1110L 0.06 TCGA-39-5040-01 1 237813294 237813294 C A RYR2 Missense_Mutation p.L2544I 0.10 possibly_damaging(0.849) TCGA-39-5040-01 1 237955441 237955441 C G RYR2 Missense_Mutation p.P4534A 0.59 benign(0.05) TCGA-39-5040-01 1 240371479 240371479 C T FMN2 Missense_Mutation p.P1123S 0.43 unknown(0) TCGA-39-5040-01 1 24424416 24424416 G - MYOM3 Frame_Shift_Del p.R248Afs*30 0.13 TCGA-39-5040-01 1 247063672 247063672 C T AHCTF1 Missense_Mutation p.R415H 0.05 deleterious(0) probably_damaging(0.998) TCGA-39-5040-01 1 248366710 248366710 T A OR2M3 Missense_Mutation p.L114H 0.17 deleterious(0) probably_damaging(1) TCGA-39-5040-01 1 26366394 26366395 - G SLC30A2 Frame_Shift_Ins p.K283Qfs*4 0.30 TCGA-39-5040-01 1 27690431 27690431 G T MAP3K6 Missense_Mutation p.L281M 0.14 deleterious(0) probably_damaging(0.971) TCGA-39-5040-01 1 28764898 28764898 G A PHACTR4 Translation_Start_Site p.M1? 0.28 deleterious_low_confidence(0.01) benign(0.006) TCGA-39-5040-01 1 29447755 29447755 C T TMEM200B Missense_Mutation p.G196S 0.52 deleterious(0.01) probably_damaging(0.998) TCGA-39-5040-01 1 3103029 3103029 C A PRDM16 Missense_Mutation p.F126L 0.33 tolerated(0.08) benign(0.005) TCGA-39-5040-01 1 39815210 39815210 G T MACF1 Nonsense_Mutation p.G1564* 0.28 TCGA-39-5040-01 1 43204153 43204153 G C CLDN19 Missense_Mutation p.D109E 0.14 tolerated(1) benign(0.096) TCGA-39-5040-01 1 45244297 45244297 G T RPS8 Silent p.V189V 0.33 TCGA-39-5040-01 1 45267581 45267581 G A PLK3 Silent p.L210L 0.07 TCGA-39-5040-01 1 46290161 46290161 A G MAST2 Missense_Mutation p.I78M 0.11 deleterious_low_confidence(0.04) benign(0.232) TCGA-39-5040-01 1 55182280 55182280 A G TTC4 Missense_Mutation p.E40G 0.08 deleterious(0.01) benign(0.24) TCGA-39-5040-01 1 57536702 57536702 C G DAB1 Silent p.V197V 0.05 TCGA-39-5040-01 1 62190838 62190838 C A TM2D1 Silent p.L47L 0.36 TCGA-39-5040-01 1 66098942 66098942 G T LEPR Intron 0.16 TCGA-39-5040-01 1 67561092 67561092 T A C1orf141 Silent p.P143P 0.31 TCGA-39-5040-01 1 71544173 71544173 C A ZRANB2 Missense_Mutation p.G62V 0.35 deleterious(0) probably_damaging(0.999) TCGA-39-5040-01 1 76262751 76262751 G T MSH4 Missense_Mutation p.Q27H 0.29 tolerated_low_confidence(0.15) benign(0.259) TCGA-39-5040-01 1 7723987 7723987 G T CAMTA1 Silent p.V460V 0.38 TCGA-39-5040-01 1 87031598 87031598 A G CLCA4 Silent p.K283K 0.31 TCGA-39-5040-01 20 17389926 17389926 G A PCSK2 Missense_Mutation p.D188N 0.69 deleterious(0) benign(0.099) TCGA-39-5040-01 20 30037895 30037895 G A DEFB123 Missense_Mutation p.R41K 0.43 tolerated(1) unknown(0) TCGA-39-5040-01 20 34242408 34242408 C T RBM12 Silent p.P279P 0.69 TCGA-39-5040-01 20 43850683 43850683 A G SEMG2 Missense_Mutation p.H137R 0.66 tolerated(0.75) benign(0.002) TCGA-39-5040-01 20 51871149 51871149 G T TSHZ2 Missense_Mutation p.E384D 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-39-5040-01 20 55052128 55052128 C T RTFDC1 Missense_Mutation p.R116W 0.48 deleterious(0.02) probably_damaging(0.93) TCGA-39-5040-01 20 56227257 56227257 T C PMEPA1 Missense_Mutation p.Y239C 0.33 tolerated_low_confidence(0.06) benign(0.033) TCGA-39-5040-01 20 57036353 57036353 G T APCDD1L Silent p.A333A 0.45 TCGA-39-5040-01 20 60791964 60791964 G T HRH3 Missense_Mutation p.Q146K 0.31 tolerated(0.35) probably_damaging(0.987) TCGA-39-5040-01 20 60994755 60994755 C T RBBP8NL 5'UTR 0.20 TCGA-39-5040-01 20 61945447 61945447 C A COL20A1 Missense_Mutation p.S794R 0.15 tolerated(0.13) benign(0.072) TCGA-39-5040-01 20 61947943 61947943 G T COL20A1 Missense_Mutation p.A855S 0.33 tolerated(0.07) benign(0.011) TCGA-39-5040-01 20 8755188 8755188 C A PLCB1 Nonsense_Mutation p.S978* 0.12 TCGA-39-5040-01 21 31869337 31869337 C T KRTAP19-4 Missense_Mutation p.S31N 0.15 tolerated_low_confidence(0.08) unknown(0) TCGA-39-5040-01 21 31986178 31986178 C A KRTAP6-1 Missense_Mutation p.G16W 0.46 unknown(0) TCGA-39-5040-01 21 32513547 32513547 G T TIAM1 Silent p.I1221I 0.56 TCGA-39-5040-01 21 32595869 32595869 C A TIAM1 Missense_Mutation p.M616I 0.14 tolerated(0.15) benign(0.003) TCGA-39-5040-01 21 41725613 41725613 G A DSCAM Missense_Mutation p.A238V 0.31 tolerated(0.48) benign(0.044) TCGA-39-5040-01 21 45716316 45716316 C T AIRE Silent p.S518S 0.16 TCGA-39-5040-01 21 46117097 46117097 C A KRTAP10-12 5'UTR 0.45 TCGA-39-5040-01 22 23465281 23465281 T A GNAZ Missense_Mutation p.M244K 0.57 deleterious(0) benign(0.101) TCGA-39-5040-01 22 23465282 23465282 G T GNAZ Missense_Mutation p.M244I 0.56 deleterious(0.02) benign(0.009) TCGA-39-5040-01 22 30051622 30051622 G T NF2 Nonsense_Mutation p.E186* 0.68 TCGA-39-5040-01 22 31851964 31851964 C G EIF4ENIF1 Missense_Mutation p.D325H 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-39-5040-01 22 40140182 40140182 G A ENTHD1 Silent p.A442A 0.14 TCGA-39-5040-01 22 42522669 42522669 C A CYP2D6 Silent p.S467S 0.52 TCGA-39-5040-01 22 43619131 43619131 G T SCUBE1 Silent p.S433S 0.59 TCGA-39-5040-01 22 51048678 51048678 G C MAPK8IP2 Missense_Mutation p.R780P 0.90 deleterious(0) probably_damaging(1) TCGA-39-5040-01 2 102000119 102000119 G T CREG2 Missense_Mutation p.P163T 0.48 deleterious(0.01) probably_damaging(0.957) TCGA-39-5040-01 2 103068245 103068245 G T IL18RAP Silent p.V468V 0.54 TCGA-39-5040-01 2 108488539 108488539 A T RGPD4 Missense_Mutation p.H1360L 0.14 deleterious(0) probably_damaging(0.999) TCGA-39-5040-01 2 128922355 128922355 A G UGGT1 Silent p.K959K 0.05 TCGA-39-5040-01 2 130899749 130899749 G C CCDC74B Silent p.L167L 0.43 TCGA-39-5040-01 2 131976105 131976105 G T POTEE Missense_Mutation p.G44C 0.14 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-39-5040-01 2 132021016 132021016 A T POTEE Missense_Mutation p.D663V 0.12 deleterious_low_confidence(0) benign(0.259) TCGA-39-5040-01 2 141806662 141806662 A G LRP1B Missense_Mutation p.L561S 0.51 possibly_damaging(0.587) TCGA-39-5040-01 2 149840267 149840267 A G KIF5C Missense_Mutation p.N568S 0.09 tolerated(0.19) benign(0.009) TCGA-39-5040-01 2 152500593 152500593 G T NEB Silent p.A2565A 0.59 TCGA-39-5040-01 2 158272177 158272177 C A CYTIP 3'UTR 0.61 TCGA-39-5040-01 2 166026957 166026957 G T SCN3A Silent p.I122I 0.14 TCGA-39-5040-01 2 166901795 166901795 T A SCN1A Missense_Mutation p.S474C 0.50 deleterious(0.04) possibly_damaging(0.784) TCGA-39-5040-01 2 167760280 167760280 G C XIRP2 Silent p.L96L 0.16 TCGA-39-5040-01 2 168102766 168102766 G T XIRP2 Nonsense_Mutation p.E1622* 0.18 TCGA-39-5040-01 2 168105694 168105694 C A XIRP2 Missense_Mutation p.L2598I 0.13 benign(0.009) TCGA-39-5040-01 2 177017333 177017333 C T HOXD4 Intron 0.21 TCGA-39-5040-01 2 17906571 17906571 T A SMC6 Missense_Mutation p.M227L 0.20 tolerated(0.87) benign(0.027) TCGA-39-5040-01 2 179395540 179395540 C T TTN Missense_Mutation p.E35268K 0.70 TCGA-39-5040-01 2 179416534 179416534 C A TTN Nonsense_Mutation p.E30365* 0.06 TCGA-39-5040-01 2 179497710 179497710 C A TTN Missense_Mutation p.G14383V 0.16 TCGA-39-5040-01 2 179497711 179497711 C A TTN Missense_Mutation p.G14383C 0.17 TCGA-39-5040-01 2 179588214 179588214 C A TTN Missense_Mutation p.G7205W 0.17 TCGA-39-5040-01 2 182358063 182358063 G - ITGA4 Frame_Shift_Del p.G389Efs*39 0.11 TCGA-39-5040-01 2 182780486 182780486 A C SSFA2 Missense_Mutation p.N707H 0.56 tolerated(0.06) benign(0.003) TCGA-39-5040-01 2 183640100 183640100 A G DNAJC10 Missense_Mutation p.I775V 0.23 tolerated(0.54) benign(0.021) TCGA-39-5040-01 2 1843088 1843088 G T MYT1L Silent p.S969S 0.52 TCGA-39-5040-01 2 189873662 189873662 C A COL3A1 Missense_Mutation p.H1180N 0.52 unknown(0) TCGA-39-5040-01 2 1983306 1983306 G C MYT1L Missense_Mutation p.Q26E 0.28 tolerated(0.07) unknown(0) TCGA-39-5040-01 2 198950806 198950806 G - PLCL1 Frame_Shift_Del p.A856Hfs*8 0.36 TCGA-39-5040-01 2 202163960 202163960 C A ALS2CR12 Splice_Site p.X314_splice 0.09 TCGA-39-5040-01 2 203624016 203624016 A T FAM117B Missense_Mutation p.Y464F 0.56 tolerated(0.06) benign(0.262) TCGA-39-5040-01 2 211452796 211452796 C A CPS1 Nonsense_Mutation p.Y218* 0.11 TCGA-39-5040-01 2 216285470 216285470 C G FN1 Missense_Mutation p.R534P 0.07 deleterious(0) probably_damaging(1) TCGA-39-5040-01 2 219029327 219029327 C A CXCR1 Missense_Mutation p.R203L 0.12 deleterious(0.02) benign(0.392) TCGA-39-5040-01 2 219825547 219825547 C T CDK5R2 Silent p.G335G 0.73 TCGA-39-5040-01 2 219825571 219825571 G T CDK5R2 Silent p.A343A 0.90 TCGA-39-5040-01 2 220161789 220161789 G - PTPRN Frame_Shift_Del p.Y719Tfs*33 0.10 TCGA-39-5040-01 2 228119433 228119433 T G COL4A3 Splice_Site p.X296_splice 0.08 TCGA-39-5040-01 2 228476134 228476134 A G C2orf83 Silent p.H143H 0.15 TCGA-39-5040-01 2 228883676 228883676 T A SPHKAP Missense_Mutation p.T632S 0.59 tolerated(0.49) benign(0.006) TCGA-39-5040-01 2 231176266 231176266 C T SP140 Nonsense_Mutation p.Q821* 0.16 TCGA-39-5040-01 2 233899334 233899334 G T NEU2 Missense_Mutation p.R237I 0.58 deleterious(0) probably_damaging(1) TCGA-39-5040-01 2 238258790 238258790 C A COL6A3 Silent p.T2293T 0.14 TCGA-39-5040-01 2 238296583 238296583 C T COL6A3 Silent p.E318E 0.55 TCGA-39-5040-01 2 239051533 239051533 C A KLHL30 Missense_Mutation p.P290T 0.17 tolerated(0.18) benign(0.003) TCGA-39-5040-01 2 242194934 242194934 C A HDLBP Missense_Mutation p.G312V 0.11 deleterious(0) probably_damaging(0.999) TCGA-39-5040-01 2 26700626 26700626 C T OTOF Intron 0.13 TCGA-39-5040-01 2 31467185 31467185 G A EHD3 Silent p.E91E 0.10 TCGA-39-5040-01 2 46372283 46372283 G T PRKCE Silent p.L548L 0.49 TCGA-39-5040-01 2 46986402 46986402 A T SOCS5 Missense_Mutation p.T245S 0.47 tolerated(1) benign(0.002) TCGA-39-5040-01 2 50149279 50149279 G T NRXN1 Missense_Mutation p.L1483M 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-39-5040-01 2 50780066 50780066 C A NRXN1 Missense_Mutation p.C513F 0.50 deleterious(0) probably_damaging(0.999) TCGA-39-5040-01 2 61454320 61454320 C T USP34 Missense_Mutation p.E2493K 0.21 tolerated(0.08) benign(0.004) TCGA-39-5040-01 2 65659102 65659102 G - SPRED2 Frame_Shift_Del p.P7Qfs*15 0.16 TCGA-39-5040-01 2 70052612 70052612 A G ANXA4 Missense_Mutation p.K311E 0.14 deleterious(0.03) benign(0.2) TCGA-39-5040-01 2 74883725 74883725 G A SEMA4F Silent p.V70V 0.46 TCGA-39-5040-01 2 86362054 86362054 C G PTCD3 Silent p.T574T 0.40 TCGA-39-5040-01 2 89327172 89327172 G T IGKV3-11 Missense_Mutation p.P4T 0.24 deleterious(0.04) possibly_damaging(0.743) TCGA-39-5040-01 2 95713709 95713709 C A MAL Missense_Mutation p.F33L 0.25 deleterious(0.04) possibly_damaging(0.766) TCGA-39-5040-01 2 97474451 97474451 G C CNNM4 Missense_Mutation p.R701P 0.45 deleterious(0) probably_damaging(0.979) TCGA-39-5040-01 3 10379893 10379893 C G ATP2B2 Silent p.L1129L 0.19 TCGA-39-5040-01 3 10443967 10443967 C - ATP2B2 Frame_Shift_Del p.A155Pfs*59 0.25 TCGA-39-5040-01 3 11058864 11058864 A G SLC6A1 5'UTR 0.18 TCGA-39-5040-01 3 113004359 113004359 G C BOC Missense_Mutation p.R1035T 0.55 tolerated_low_confidence(0.4) benign(0.017) TCGA-39-5040-01 3 121822497 121822497 T G CD86 Missense_Mutation p.V68G 0.60 deleterious(0.01) probably_damaging(0.992) TCGA-39-5040-01 3 124117574 124117574 C A KALRN Silent p.P732P 0.47 TCGA-39-5040-01 3 130188264 130188264 C A COL6A5 Silent p.T2472T 0.53 TCGA-39-5040-01 3 130282210 130282210 A C COL6A6 Silent p.A121A 0.50 TCGA-39-5040-01 3 132320042 132320042 C T ACKR4 Silent p.I267I 0.16 TCGA-39-5040-01 3 134670281 134670281 C A EPHB1 Missense_Mutation p.F64L 0.14 tolerated(0.17) benign(0.02) TCGA-39-5040-01 3 13896167 13896167 G C WNT7A Missense_Mutation p.D144E 0.19 tolerated(1) benign(0.003) TCGA-39-5040-01 3 1424690 1424690 G T CNTN6 Missense_Mutation p.G744V 0.43 deleterious(0) probably_damaging(0.915) TCGA-39-5040-01 3 151046614 151046614 G T P2RY13 Missense_Mutation p.T77N 0.05 tolerated(0.43) benign(0.085) TCGA-39-5040-01 3 161221174 161221174 G A OTOL1 Missense_Mutation p.G293E 0.61 deleterious(0) probably_damaging(1) TCGA-39-5040-01 3 165547676 165547676 T A BCHE Missense_Mutation p.L382F 0.14 deleterious(0) probably_damaging(0.956) TCGA-39-5040-01 3 179051712 179051712 G T ZNF639 Missense_Mutation p.Q320H 0.53 deleterious(0.01) probably_damaging(0.99) TCGA-39-5040-01 3 180327703 180327703 T G TTC14 Missense_Mutation p.D562E 0.08 tolerated(0.37) unknown(0) TCGA-39-5040-01 3 18428054 18428054 G C SATB1 Missense_Mutation p.S419C 0.49 deleterious(0) probably_damaging(0.983) TCGA-39-5040-01 3 20167424 20167424 A G KAT2B Missense_Mutation p.R481G 0.15 deleterious(0) probably_damaging(0.994) TCGA-39-5040-01 3 25820175 25820175 G A NGLY1 Missense_Mutation p.P46S 0.53 deleterious(0.01) probably_damaging(1) TCGA-39-5040-01 3 33896665 33896665 A T PDCD6IP Missense_Mutation p.N683I 0.15 deleterious(0) probably_damaging(0.977) TCGA-39-5040-01 3 38135220 38135220 G T DLEC1 Silent p.R627R 0.17 TCGA-39-5040-01 3 46244654 46244654 C A CCR1 3'UTR 0.45 TCGA-39-5040-01 3 49719992 49719992 A T APEH Missense_Mutation p.Q569L 0.15 tolerated(0.33) benign(0.039) TCGA-39-5040-01 3 49847145 49847145 G A UBA7 Silent p.L640L 0.11 TCGA-39-5040-01 3 50005453 50005453 G A RBM6 Missense_Mutation p.D199N 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-39-5040-01 3 50222958 50222958 C T SEMA3F Silent p.V513V 0.51 TCGA-39-5040-01 3 78666943 78666943 C - ROBO1 Frame_Shift_Del p.G1375Afs*42 0.20 TCGA-39-5040-01 3 97167443 97167443 G C EPHA6 Missense_Mutation p.R588T 0.14 tolerated(0.19) probably_damaging(0.998) TCGA-39-5040-01 4 10447010 10447010 C G ZNF518B Missense_Mutation p.V315L 0.45 tolerated(0.08) benign(0.284) TCGA-39-5040-01 4 108911194 108911194 G T HADH Missense_Mutation p.G36W 0.62 deleterious(0) probably_damaging(1) TCGA-39-5040-01 4 110433152 110433152 C G SEC24B Missense_Mutation p.R606G 0.07 deleterious(0) probably_damaging(1) TCGA-39-5040-01 4 114294503 114294503 G T ANK2 Missense_Mutation p.M3919I 0.70 benign(0.009) TCGA-39-5040-01 4 115544270 115544270 C G UGT8 Missense_Mutation p.N78K 0.05 deleterious(0.03) probably_damaging(0.981) TCGA-39-5040-01 4 119952898 119952898 C G SYNPO2 Missense_Mutation p.Q990E 0.55 tolerated(1) benign(0.062) TCGA-39-5040-01 4 122078257 122078257 G C TNIP3 Missense_Mutation p.R196G 0.62 deleterious(0.03) possibly_damaging(0.689) TCGA-39-5040-01 4 122743650 122743650 C G CCNA2 Missense_Mutation p.R122P 0.05 tolerated(0.22) benign(0.001) TCGA-39-5040-01 4 142651068 142651068 A T IL15 Silent p.G103G 0.65 TCGA-39-5040-01 4 151388832 151388832 A G LRBA Missense_Mutation p.L2269S 0.56 deleterious(0) probably_damaging(1) TCGA-39-5040-01 4 153247235 153247235 C A FBXW7 Missense_Mutation p.V523L 0.59 deleterious(0.03) possibly_damaging(0.714) TCGA-39-5040-01 4 159573006 159573006 G T RXFP1 Missense_Mutation p.M691I 0.56 deleterious(0.03) benign(0.007) TCGA-39-5040-01 4 172735729 172735729 G T GALNTL6 5'UTR 0.39 TCGA-39-5040-01 4 175898532 175898532 C A ADAM29 Missense_Mutation p.T619N 0.22 deleterious(0.01) benign(0.008) TCGA-39-5040-01 4 42965107 42965107 G T GRXCR1 Missense_Mutation p.A195S 0.09 tolerated(0.77) benign(0.034) TCGA-39-5040-01 4 48076032 48076032 G T TXK Missense_Mutation p.A426D 0.46 deleterious(0.01) possibly_damaging(0.876) TCGA-39-5040-01 4 57797296 57797296 A C REST Missense_Mutation p.K758Q 0.58 tolerated_low_confidence(0.58) benign(0.133) TCGA-39-5040-01 4 62903567 62903567 G T LPHN3 Missense_Mutation p.G1169V 0.73 deleterious(0) probably_damaging(0.948) TCGA-39-5040-01 4 70160516 70160516 A T UGT2B28 Nonsense_Mutation p.K527* 0.61 TCGA-39-5040-01 4 70592914 70592914 C A SULT1B1 Silent p.T261T 0.58 TCGA-39-5040-01 4 71063752 71063752 G A ODAM Missense_Mutation p.G85R 0.63 tolerated(0.28) benign(0.245) TCGA-39-5040-01 4 89052269 89052269 C A ABCG2 Nonsense_Mutation p.E159* 0.23 TCGA-39-5040-01 4 89052270 89052270 G C ABCG2 Missense_Mutation p.N158K 0.23 tolerated(0.5) benign(0.018) TCGA-39-5040-01 4 90856628 90856628 C A MMRN1 Nonsense_Mutation p.C599* 0.23 TCGA-39-5040-01 5 110837776 110837776 G T STARD4 Missense_Mutation p.Q56K 0.23 deleterious(0.01) benign(0.189) TCGA-39-5040-01 5 11117662 11117662 C A CTNND2 Missense_Mutation p.G726V 0.21 deleterious(0) probably_damaging(0.979) TCGA-39-5040-01 5 112177965 112177965 C T APC Missense_Mutation p.S2225F 0.15 probably_damaging(1) TCGA-39-5040-01 5 112228693 112228693 C T ZRSR1 Nonsense_Mutation p.Q453* 0.18 TCGA-39-5040-01 5 112769553 112769553 G A TSSK1B Silent p.P328P 0.40 TCGA-39-5040-01 5 123982908 123982908 C A ZNF608 Missense_Mutation p.A1057S 0.19 tolerated(1) benign(0.001) TCGA-39-5040-01 5 128324355 128324355 G A SLC27A6 Missense_Mutation p.A250T 0.23 tolerated(0.27) probably_damaging(0.978) TCGA-39-5040-01 5 129521215 129521215 G T CHSY3 Missense_Mutation p.G794C 0.39 deleterious(0) probably_damaging(1) TCGA-39-5040-01 5 131729382 131729382 T G SLC22A5 Missense_Mutation p.F489V 0.16 tolerated(0.52) benign(0.008) TCGA-39-5040-01 5 140174589 140174589 C A PCDHA2 Silent p.R14R 0.42 TCGA-39-5040-01 5 140175422 140175422 T C PCDHA2 Silent p.T291T 0.42 TCGA-39-5040-01 5 140182027 140182027 C A PCDHA3 Silent p.R415R 0.39 TCGA-39-5040-01 5 140208003 140208003 C A PCDHA6 Silent p.I109I 0.23 TCGA-39-5040-01 5 140222530 140222530 G T PCDHA8 Missense_Mutation p.V542L 0.21 tolerated_low_confidence(0.15) benign(0.18) TCGA-39-5040-01 5 140531308 140531308 G T PCDHB6 Silent p.P490P 0.36 TCGA-39-5040-01 5 140537715 140537715 C A PCDHB17 3'UTR 0.17 TCGA-39-5040-01 5 140554156 140554156 C A PCDHB7 Silent p.A580A 0.18 TCGA-39-5040-01 5 140564141 140564141 C T PCDHB16 Silent p.P669P 0.44 TCGA-39-5040-01 5 140712448 140712448 G T PCDHGA1 Missense_Mutation p.A733S 0.35 tolerated_low_confidence(0.12) benign(0.015) TCGA-39-5040-01 5 140783195 140783195 G A PCDHGA9 Missense_Mutation p.V226M 0.21 tolerated_low_confidence(0.06) benign(0.262) TCGA-39-5040-01 5 140789216 140789216 C A PCDHGB6 Missense_Mutation p.L483I 0.24 deleterious(0.04) benign(0.102) TCGA-39-5040-01 5 141019180 141019180 C A RELL2 Missense_Mutation p.P156H 0.45 deleterious(0.02) possibly_damaging(0.497) TCGA-39-5040-01 5 14390340 14390340 C T TRIO Silent p.N1353N 0.47 TCGA-39-5040-01 5 14394157 14394157 A T TRIO Missense_Mutation p.Q1410L 0.15 probably_damaging(0.989) TCGA-39-5040-01 5 145894540 145894540 C G GPR151 Missense_Mutation p.E379D 0.06 tolerated(0.34) benign(0.004) TCGA-39-5040-01 5 153413937 153413937 C T FAM114A2 Missense_Mutation p.D71N 0.08 tolerated(0.13) benign(0.131) TCGA-39-5040-01 5 155771637 155771637 G T SGCD Missense_Mutation p.V48L 0.43 tolerated(0.07) benign(0.074) TCGA-39-5040-01 5 160047955 160047955 G A ATP10B Silent p.V605V 0.41 TCGA-39-5040-01 5 160761898 160761898 C A GABRB2 Missense_Mutation p.R231S 0.36 deleterious(0) probably_damaging(1) TCGA-39-5040-01 5 160761899 160761899 C A GABRB2 Missense_Mutation p.R231M 0.38 deleterious(0) probably_damaging(1) TCGA-39-5040-01 5 161116653 161116653 A - GABRA6 Frame_Shift_Del p.S182Vfs*15 0.24 TCGA-39-5040-01 5 17354572 17354572 A T CTD-2139B15.2 RNA 0.31 TCGA-39-5040-01 5 21975222 21975222 A T CDH12 Silent p.T168T 0.27 TCGA-39-5040-01 5 24511501 24511501 C A CDH10 Missense_Mutation p.G313C 0.43 deleterious(0) probably_damaging(0.935) TCGA-39-5040-01 5 26881658 26881658 G T CDH9 Silent p.R653R 0.38 TCGA-39-5040-01 5 31318010 31318010 C A CDH6 Missense_Mutation p.L621M 0.35 tolerated(0.05) probably_damaging(0.994) TCGA-39-5040-01 5 34824537 34824537 G C RAI14 Missense_Mutation p.A867P 0.35 tolerated(0.14) possibly_damaging(0.522) TCGA-39-5040-01 5 35659219 35659219 G C SPEF2 Missense_Mutation p.K359N 0.18 deleterious(0) probably_damaging(0.995) TCGA-39-5040-01 5 35779393 35779393 G T SPEF2 Silent p.L1464L 0.36 TCGA-39-5040-01 5 35857090 35857090 T C IL7R Missense_Mutation p.L4P 0.22 tolerated(0.07) benign(0.258) TCGA-39-5040-01 5 38458446 38458446 G C EGFLAM Missense_Mutation p.M915I 0.24 tolerated(0.4) benign(0.063) TCGA-39-5040-01 5 54329739 54329739 G A GZMK Silent p.P260P 0.26 TCGA-39-5040-01 5 6337374 6337374 C A CTD-2324F15.2 RNA 0.46 TCGA-39-5040-01 5 64595953 64595953 C A ADAMTS6 Missense_Mutation p.G410V 0.19 deleterious(0) probably_damaging(0.999) TCGA-39-5040-01 5 71757221 71757221 G A ZNF366 Missense_Mutation p.R35W 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.507) TCGA-39-5040-01 5 80369116 80369116 A T RASGRF2 Missense_Mutation p.R244S 0.17 deleterious(0) probably_damaging(0.928) TCGA-39-5040-01 5 82808018 82808018 A T VCAN Missense_Mutation p.E282V 0.48 deleterious(0) probably_damaging(0.999) TCGA-39-5040-01 6 129807650 129807650 G T LAMA2 Missense_Mutation p.R2594L 0.53 tolerated(0.1) possibly_damaging(0.826) TCGA-39-5040-01 6 130762460 130762460 G T TMEM200A Missense_Mutation p.C298F 0.62 deleterious(0) probably_damaging(0.997) TCGA-39-5040-01 6 133035172 133035172 C A VNN1 Translation_Start_Site p.M1? 0.75 tolerated_low_confidence(1) benign(0) TCGA-39-5040-01 6 138428343 138428343 G A PERP Silent p.S45S 0.24 TCGA-39-5040-01 6 143093736 143093736 T A HIVEP2 Missense_Mutation p.S714C 0.62 deleterious(0.02) possibly_damaging(0.503) TCGA-39-5040-01 6 152553311 152553311 T A SYNE1 Missense_Mutation p.E6934D 0.74 benign(0.403) TCGA-39-5040-01 6 165806200 165806200 C - PDE10A Frame_Shift_Del p.V531Sfs*3 0.43 TCGA-39-5040-01 6 28195102 28195102 G T ZSCAN9 Missense_Mutation p.W80C 0.70 deleterious(0.01) benign(0.096) TCGA-39-5040-01 6 28872166 28872166 G C TRIM27 Missense_Mutation p.A408G 0.13 tolerated(0.17) probably_damaging(0.918) TCGA-39-5040-01 6 29691235 29691235 G - HLA-F 5'UTR 0.44 TCGA-39-5040-01 6 31685378 31685378 C A LY6G6D Missense_Mutation p.Q67K 0.67 tolerated(0.23) benign(0.009) TCGA-39-5040-01 6 35837680 35837680 T C SRPK1 Splice_Site p.X331_splice 0.70 TCGA-39-5040-01 6 46828499 46828499 C G GPR116 Missense_Mutation p.D778H 0.62 deleterious(0.04) probably_damaging(0.957) TCGA-39-5040-01 6 50683085 50683085 A T TFAP2D Missense_Mutation p.Q99L 0.65 tolerated(0.07) benign(0.006) TCGA-39-5040-01 6 52009176 52009177 - C MIR206 RNA 0.40 TCGA-39-5040-01 6 99857197 99857197 C T PNISR Silent p.P175P 0.12 TCGA-39-5040-01 7 100189370 100189370 G A FBXO24 Missense_Mutation p.G173S 0.54 deleterious_low_confidence(0) possibly_damaging(0.862) TCGA-39-5040-01 7 100850942 100850942 C A PLOD3 Missense_Mutation p.G618W 0.37 deleterious(0) probably_damaging(0.986) TCGA-39-5040-01 7 103175855 103175855 C A RELN Silent p.V2419V 0.24 TCGA-39-5040-01 7 107215681 107215681 G A DUS4L Silent p.E135E 0.28 TCGA-39-5040-01 7 121636470 121636470 C A PTPRZ1 Missense_Mutation p.D321E 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-39-5040-01 7 121651671 121651671 T A PTPRZ1 Missense_Mutation p.H857Q 0.25 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-39-5040-01 7 121651672 121651672 G T PTPRZ1 Missense_Mutation p.A858S 0.25 deleterious_low_confidence(0) possibly_damaging(0.622) TCGA-39-5040-01 7 123595111 123595111 T A SPAM1 Missense_Mutation p.W339R 0.46 deleterious(0) probably_damaging(1) TCGA-39-5040-01 7 128415649 128415649 G A OPN1SW Missense_Mutation p.R66W 0.20 deleterious(0.02) benign(0.034) TCGA-39-5040-01 7 128491584 128491584 C A FLNC Missense_Mutation p.T1915N 0.26 deleterious(0.03) possibly_damaging(0.906) TCGA-39-5040-01 7 135433260 135433260 C A FAM180A Missense_Mutation p.W23C 0.22 tolerated(0.09) probably_damaging(0.927) TCGA-39-5040-01 7 138545903 138545903 C A KIAA1549 Silent p.T1743T 0.44 TCGA-39-5040-01 7 141726934 141726934 G C MGAM Silent p.A334A 0.16 TCGA-39-5040-01 7 142983744 142983744 G T TMEM139 Missense_Mutation p.R158I 0.22 deleterious(0) probably_damaging(0.974) TCGA-39-5040-01 7 143056118 143056118 C T FAM131B Splice_Site p.X90_splice 0.11 TCGA-39-5040-01 7 143140732 143140732 G T TAS2R60 Missense_Mutation p.G63W 0.24 deleterious(0) probably_damaging(0.965) TCGA-39-5040-01 7 143747577 143747577 G T OR2A5 Missense_Mutation p.G28V 0.24 tolerated(0.17) benign(0.008) TCGA-39-5040-01 7 150269969 150269969 G T GIMAP4 Nonsense_Mutation p.E271* 0.21 TCGA-39-5040-01 7 151927113 151927113 C A KMT2C Splice_Site p.X958_splice 0.13 TCGA-39-5040-01 7 158457266 158457266 C G NCAPG2 Missense_Mutation p.R552S 0.23 deleterious(0) probably_damaging(0.999) TCGA-39-5040-01 7 18767203 18767203 C A HDAC9 Missense_Mutation p.P578T 0.73 tolerated(0.42) benign(0.001) TCGA-39-5040-01 7 23682551 23682551 G A CCDC126 Silent p.A80A 0.27 TCGA-39-5040-01 7 24324984 24324984 C T NPY Missense_Mutation p.A42V 0.20 tolerated(0.09) possibly_damaging(0.891) TCGA-39-5040-01 7 24932006 24932006 C A OSBPL3 Missense_Mutation p.G29V 0.43 tolerated(0.31) benign(0.162) TCGA-39-5040-01 7 31683379 31683379 C A CCDC129 Missense_Mutation p.H825N 0.21 tolerated(0.2) possibly_damaging(0.881) TCGA-39-5040-01 7 31683395 31683395 A G CCDC129 Missense_Mutation p.H830R 0.39 deleterious(0.03) probably_damaging(0.967) TCGA-39-5040-01 7 36445984 36445984 G C ANLN Missense_Mutation p.E228Q 0.26 deleterious(0.04) possibly_damaging(0.517) TCGA-39-5040-01 7 36901296 36901296 G C ELMO1 Missense_Mutation p.Q651E 0.44 tolerated(0.75) benign(0.004) TCGA-39-5040-01 7 43495926 43495926 G T HECW1 Missense_Mutation p.R844L 0.23 deleterious(0) probably_damaging(0.993) TCGA-39-5040-01 7 45776389 45776389 G A SEPT7P2 RNA 0.42 TCGA-39-5040-01 7 54612427 54612427 G C VSTM2A Missense_Mutation p.W64C 0.52 deleterious(0) probably_damaging(1) TCGA-39-5040-01 7 81331974 81331974 C A HGF Missense_Mutation p.G704C 0.19 deleterious(0.01) probably_damaging(0.965) TCGA-39-5040-01 7 82474800 82474800 C A PCLO Silent p.V4611V 0.39 TCGA-39-5040-01 7 97363084 97363084 G T TAC1 Missense_Mutation p.R58I 0.41 deleterious(0) possibly_damaging(0.674) TCGA-39-5040-01 8 100733132 100733132 A T VPS13B Missense_Mutation p.N2328Y 0.34 deleterious(0.03) benign(0.009) TCGA-39-5040-01 8 103293729 103293729 G C UBR5 Missense_Mutation p.S1905R 0.07 tolerated(0.22) benign(0.119) TCGA-39-5040-01 8 10469282 10469282 T A RP1L1 Missense_Mutation p.I776L 0.58 benign(0.009) TCGA-39-5040-01 8 104897848 104897848 C T RIMS2 Missense_Mutation p.R341C 0.40 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-39-5040-01 8 105263888 105263888 A T RIMS2 Missense_Mutation p.Q1297L 0.45 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-39-5040-01 8 110131601 110131601 G T TRHR Missense_Mutation p.V372F 0.21 tolerated(0.05) possibly_damaging(0.675) TCGA-39-5040-01 8 110530615 110530615 G - PKHD1L1 Frame_Shift_Del p.S3970Mfs*9 0.25 TCGA-39-5040-01 8 110980739 110980739 A T KCNV1 Missense_Mutation p.S361T 0.43 deleterious(0) benign(0.353) TCGA-39-5040-01 8 113318410 113318410 C A CSMD3 Missense_Mutation p.G2633W 0.40 deleterious(0) probably_damaging(1) TCGA-39-5040-01 8 122626376 122626376 T G HAS2 Missense_Mutation p.Q544H 0.25 deleterious_low_confidence(0.01) benign(0.049) TCGA-39-5040-01 8 122626448 122626448 T A HAS2 Silent p.A520A 0.45 TCGA-39-5040-01 8 131949350 131949350 C A ADCY8 Nonsense_Mutation p.E484* 0.38 TCGA-39-5040-01 8 134024259 134024259 G T TG Missense_Mutation p.V2126F 0.32 deleterious(0) benign(0.352) TCGA-39-5040-01 8 134042252 134042252 G T TG Missense_Mutation p.R2408L 0.15 deleterious(0.01) possibly_damaging(0.73) TCGA-39-5040-01 8 134042253 134042253 G T TG Silent p.R2408R 0.15 TCGA-39-5040-01 8 139791784 139791784 C G COL22A1 Missense_Mutation p.E558Q 0.26 unknown(0) TCGA-39-5040-01 8 139890228 139890228 G T COL22A1 Silent p.A141A 0.25 TCGA-39-5040-01 8 143558631 143558631 T C BAI1 Missense_Mutation p.V405A 0.40 tolerated(0.07) benign(0.418) TCGA-39-5040-01 8 145699823 145699823 G T FOXH1 Missense_Mutation p.S299Y 0.30 deleterious(0) probably_damaging(0.91) TCGA-39-5040-01 8 19694667 19694667 A G INTS10 Silent p.R545R 0.46 TCGA-39-5040-01 8 26513217 26513217 G C DPYSL2 Missense_Mutation p.G572R 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-39-5040-01 8 26627800 26627800 G T ADRA1A Silent p.R423R 0.46 TCGA-39-5040-01 8 26721814 26721814 C G ADRA1A Missense_Mutation p.D225H 0.11 deleterious(0.01) benign(0.198) TCGA-39-5040-01 8 27737127 27737127 C A SCARA5 Missense_Mutation p.R437L 0.45 deleterious(0.04) benign(0.049) TCGA-39-5040-01 8 36768584 36768584 C T KCNU1 Missense_Mutation p.T823I 0.34 deleterious(0.02) benign(0.002) TCGA-39-5040-01 8 37730274 37730274 C T RAB11FIP1 Silent p.K682K 0.37 TCGA-39-5040-01 8 39466605 39466605 C A ADAM18 Missense_Mutation p.T78N 0.39 tolerated(0.11) benign(0.006) TCGA-39-5040-01 8 42563891 42563891 T A CHRNB3 Missense_Mutation p.N28K 0.45 tolerated(0.72) benign(0.01) TCGA-39-5040-01 8 51465643 51465643 G T SNTG1 Silent p.G238G 0.46 TCGA-39-5040-01 8 68084791 68084791 G A CSPP1 Splice_Site p.X985_splice 0.46 TCGA-39-5040-01 8 71056993 71056993 G T NCOA2 Missense_Mutation p.A899D 0.08 tolerated(0.62) benign(0.101) TCGA-39-5040-01 8 77767190 77767190 C G ZFHX4 Missense_Mutation p.P2678R 0.31 probably_damaging(0.999) TCGA-39-5040-01 8 77767769 77767769 C A ZFHX4 Missense_Mutation p.P2871Q 0.39 probably_damaging(0.961) TCGA-39-5040-01 8 8239017 8239017 T A SGK223 Nonsense_Mutation p.K81* 0.56 TCGA-39-5040-01 8 92346675 92346676 GG TTT SLC26A7 Splice_Site p.X265_splice 0.09 TCGA-39-5040-01 9 113231367 113231367 C G SVEP1 Missense_Mutation p.G1005R 0.75 probably_damaging(1) TCGA-39-5040-01 9 115167979 115167982 AGAA - HSDL2 Frame_Shift_Del p.K87Pfs*12 0.66 TCGA-39-5040-01 9 117066950 117066950 A G COL27A1 Silent p.P1645P 0.16 TCGA-39-5040-01 9 125611962 125611962 C T RC3H2 Missense_Mutation p.E1174K 0.57 deleterious_low_confidence(0) possibly_damaging(0.761) TCGA-39-5040-01 9 131261372 131261372 G A ODF2 Silent p.T756T 0.73 TCGA-39-5040-01 9 133333787 133333787 G T ASS1 Splice_Site p.X59_splice 0.72 TCGA-39-5040-01 9 136202991 136202991 C G SURF6 5'UTR 0.73 TCGA-39-5040-01 9 136307853 136307853 C T ADAMTS13 Silent p.P741P 0.71 TCGA-39-5040-01 9 140008960 140008960 C A DPP7 Nonsense_Mutation p.E46* 0.67 TCGA-39-5040-01 9 140146519 140146519 C A C9orf173 Missense_Mutation p.P112Q 0.75 deleterious(0) probably_damaging(0.997) TCGA-39-5040-01 9 32436333 32436333 T C ACO1 Silent p.L729L 0.27 TCGA-39-5040-01 9 32544069 32544069 C A TOPORS Missense_Mutation p.V152L 0.43 deleterious(0.01) possibly_damaging(0.54) TCGA-39-5040-01 9 35802505 35802505 A G NPR2 Silent p.R572R 0.28 TCGA-39-5040-01 X 103499108 103499108 C T ESX1 Missense_Mutation p.G78D 0.59 deleterious(0.04) benign(0.336) TCGA-39-5040-01 X 106845186 106845186 G - FRMPD3 Frame_Shift_Del p.G1341Afs*34 0.47 TCGA-39-5040-01 X 111019993 111019993 G - TRPC5 Frame_Shift_Del p.Q824Kfs*81 0.42 TCGA-39-5040-01 X 114251794 114251794 G T IL13RA2 Silent p.T13T 0.46 TCGA-39-5040-01 X 129184721 129184726 GAGGGT - BCORL1 In_Frame_Del p.E1550_G1551del 0.14 TCGA-39-5040-01 X 130407878 130407878 C T IGSF1 Silent p.Q1306Q 0.48 TCGA-39-5040-01 X 130408072 130408072 G T IGSF1 Missense_Mutation p.P1292H 0.54 deleterious_low_confidence(0) probably_damaging(1) TCGA-39-5040-01 X 139047579 139047579 G T CXorf66 Missense_Mutation p.S26Y 0.58 deleterious(0) probably_damaging(0.919) TCGA-39-5040-01 X 140953384 140953384 A G MAGEC3 Missense_Mutation p.Y84C 0.51 deleterious_low_confidence(0) possibly_damaging(0.759) TCGA-39-5040-01 X 150867277 150867277 A T PRRG3 5'UTR 0.57 TCGA-39-5040-01 X 152225752 152225752 A G PNMA3 Missense_Mutation p.R114G 0.61 tolerated(1) benign(0.012) TCGA-39-5040-01 X 152807827 152807827 C T ATP2B3 Silent p.L237L 0.54 TCGA-39-5040-01 X 153496090 153496090 T - OPN1MW2 Frame_Shift_Del p.M273Rfs*30 0.55 TCGA-39-5040-01 X 3228528 3228528 G T MXRA5 Silent p.P2572P 0.64 TCGA-39-5040-01 X 5821414 5821414 C A NLGN4X Silent p.T435T 0.32 TCGA-39-5040-01 X 591533 591533 A T SHOX 5'UTR 0.35 TCGA-39-5040-01 X 70149730 70149730 G A SLC7A3 Silent p.L40L 0.78 TCGA-39-5040-01 X 78011119 78011119 C G LPAR4 Missense_Mutation p.I251M 0.67 deleterious(0) probably_damaging(0.996) TCGA-39-5040-01 X 79999754 79999754 T A BRWD3 Splice_Site p.X198_splice 0.48 TCGA-39-5040-01 X 91133597 91133597 G A PCDH11X Silent p.V786V 0.63 TCGA-39-5040-01 X 99551684 99551684 C T PCDH19 Missense_Mutation p.R1013Q 0.86 tolerated(0.08) benign(0.014) TCGA-39-5040-01 Y 4968304 4968304 G T PCDH11Y Missense_Mutation p.Q895H 0.63 tolerated(0.09) probably_damaging(0.952) TCGA-43-2576-01 10 102684566 102684566 G T FAM178A Missense_Mutation p.S603I 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-43-2576-01 10 12043694 12043694 C T UPF2 Silent p.K545K 0.13 TCGA-43-2576-01 10 129868644 129868644 A G PTPRE Missense_Mutation p.E408G 0.36 tolerated(0.15) possibly_damaging(0.656) TCGA-43-2576-01 10 134660437 134660437 T A TTC40 Missense_Mutation p.Q2089L 0.16 deleterious(0) probably_damaging(0.994) TCGA-43-2576-01 10 16996509 16996509 G - CUBN Frame_Shift_Del p.R1579Gfs*21 0.24 TCGA-43-2576-01 10 24835028 24835028 T G KIAA1217 Missense_Mutation p.H1869Q 0.21 deleterious(0.04) probably_damaging(0.996) TCGA-43-2576-01 10 26442852 26442852 G T MYO3A Silent p.L903L 0.06 TCGA-43-2576-01 10 31810015 31810015 T C ZEB1 Silent p.P585P 0.10 TCGA-43-2576-01 10 43279935 43279935 A T BMS1 Silent p.L31L 0.26 TCGA-43-2576-01 10 50121596 50121596 T C LRRC18 Missense_Mutation p.E202G 0.30 tolerated(0.12) benign(0.018) TCGA-43-2576-01 10 50530874 50530874 G T C10orf71 Missense_Mutation p.W95L 0.26 deleterious(0) probably_damaging(0.999) TCGA-43-2576-01 10 50944403 50944403 C A OGDHL Missense_Mutation p.Q918H 0.30 deleterious(0) probably_damaging(1) TCGA-43-2576-01 10 61115692 61115692 T A FAM13C Missense_Mutation p.D25V 0.19 deleterious_low_confidence(0) probably_damaging(0.915) TCGA-43-2576-01 10 61412624 61412624 A T SLC16A9 Missense_Mutation p.L479Q 0.28 deleterious(0) probably_damaging(0.992) TCGA-43-2576-01 10 71688730 71688730 G T COL13A1 Missense_Mutation p.G476V 0.21 deleterious(0) probably_damaging(1) TCGA-43-2576-01 10 78709023 78709023 C T KCNMA1 Missense_Mutation p.M845I 0.28 deleterious(0.02) probably_damaging(0.998) TCGA-43-2576-01 10 81316901 81316901 G T SFTPA2 3'UTR 0.16 TCGA-43-2576-01 10 88469712 88469712 C A LDB3 Missense_Mutation p.A384D 0.19 tolerated(0.09) benign(0.037) TCGA-43-2576-01 10 90497493 90497493 C G LIPK Missense_Mutation p.N257K 0.24 tolerated(0.09) benign(0.06) TCGA-43-2576-01 10 96802802 96802802 C A CYP2C8 Missense_Mutation p.G332C 0.26 deleterious(0) probably_damaging(0.999) TCGA-43-2576-01 10 98170216 98170216 A C TLL2 Missense_Mutation p.L355R 0.26 deleterious(0.01) probably_damaging(0.984) TCGA-43-2576-01 11 102479709 102479709 T C MMP20 Missense_Mutation p.H257R 0.10 tolerated(1) benign(0.001) TCGA-43-2576-01 11 1157862 1157862 C A MUC5AC Missense_Mutation p.T310N 0.23 deleterious(0) probably_damaging(0.998) TCGA-43-2576-01 11 117869810 117869810 C A IL10RA Silent p.G397G 0.14 TCGA-43-2576-01 11 118949954 118949954 G T VPS11 Silent p.R793R 0.31 TCGA-43-2576-01 11 119217001 119217001 G T MFRP Missense_Mutation p.S46R 0.19 tolerated(0.3) benign(0.018) TCGA-43-2576-01 11 120327913 120327913 C A ARHGEF12 Missense_Mutation p.P715T 0.18 tolerated(0.1) benign(0.271) TCGA-43-2576-01 11 121016501 121016501 T A TECTA Missense_Mutation p.S1261T 0.22 tolerated(0.9) benign(0) TCGA-43-2576-01 11 123847608 123847608 A G OR10S1 Missense_Mutation p.L264P 0.21 deleterious(0) probably_damaging(1) TCGA-43-2576-01 11 124310542 124310543 CC T OR8B8 Frame_Shift_Del p.G147Mfs*17 0.11 TCGA-43-2576-01 11 124310562 124310562 C G OR8B8 Silent p.V140V 0.18 TCGA-43-2576-01 11 124440737 124440737 G T OR8A1 Missense_Mutation p.S258I 0.17 deleterious(0) probably_damaging(0.965) TCGA-43-2576-01 11 124509655 124509655 A C SIAE Missense_Mutation p.F359V 0.11 deleterious(0) probably_damaging(0.999) TCGA-43-2576-01 11 14899628 14899628 C T CYP2R1 3'UTR 0.14 TCGA-43-2576-01 11 17531016 17531016 G T USH1C Missense_Mutation p.P634T 0.20 tolerated_low_confidence(0.33) benign(0.001) TCGA-43-2576-01 11 18054831 18054831 G A TPH1 Missense_Mutation p.A131V 0.22 deleterious(0.03) probably_damaging(0.943) TCGA-43-2576-01 11 27141381 27141381 T C BBOX1 Silent p.H275H 0.20 TCGA-43-2576-01 11 36597620 36597620 C A RAG1 Silent p.L922L 0.16 TCGA-43-2576-01 11 40136149 40136149 G T LRRC4C Missense_Mutation p.T565N 0.18 deleterious_low_confidence(0) possibly_damaging(0.517) TCGA-43-2576-01 11 44289070 44289070 G T ALX4 Missense_Mutation p.L294I 0.16 deleterious(0.01) probably_damaging(0.952) TCGA-43-2576-01 11 47819417 47819417 G A NUP160 Missense_Mutation p.S1068L 0.20 deleterious(0) probably_damaging(0.933) TCGA-43-2576-01 11 48239167 48239167 T C OR4B1 Missense_Mutation p.V269A 0.20 deleterious(0) possibly_damaging(0.868) TCGA-43-2576-01 11 48510532 48510532 G A OR4A47 Missense_Mutation p.G63D 0.21 tolerated_low_confidence(0.11) benign(0.002) TCGA-43-2576-01 11 49831372 49831372 G T RP11-707M1.1 RNA 0.11 TCGA-43-2576-01 11 50003689 50003689 C G OR4C12 Missense_Mutation p.A117P 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-43-2576-01 11 55065449 55065449 T A TRIM51HP RNA 0.30 TCGA-43-2576-01 11 55371805 55371826 TAATCCTAACAGTATGAATTCA - OR4C11 Frame_Shift_Del p.E9Hfs*5 0.10 TCGA-43-2576-01 11 55579072 55579072 G T OR5L1 Missense_Mutation p.G44C 0.21 deleterious(0) probably_damaging(0.995) TCGA-43-2576-01 11 55890218 55890218 G T OR8H3 Missense_Mutation p.A124S 0.22 deleterious(0) benign(0.049) TCGA-43-2576-01 11 56257974 56257974 A T OR5M8 Silent p.L291L 0.20 TCGA-43-2576-01 11 56510511 56510511 G T OR9G4 Missense_Mutation p.H259Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-43-2576-01 11 58125792 58125792 T C OR5B17 Missense_Mutation p.I251V 0.21 deleterious_low_confidence(0) benign(0.008) TCGA-43-2576-01 11 59633939 59633939 C T TCN1 Missense_Mutation p.R2K 0.20 tolerated(0.2) benign(0.269) TCGA-43-2576-01 11 59992488 59992488 C G MS4A4E Intron 0.25 TCGA-43-2576-01 11 60893272 60893272 C T CD5 Silent p.S483S 0.24 TCGA-43-2576-01 11 62300487 62300487 C T AHNAK Missense_Mutation p.D468N 0.21 benign(0.026) TCGA-43-2576-01 11 62911102 62911102 C A SLC22A24 Missense_Mutation p.W50C 0.14 deleterious(0) probably_damaging(0.922) TCGA-43-2576-01 11 66811170 66811170 C T SYT12 Missense_Mutation p.T228I 0.20 tolerated(0.2) benign(0.005) TCGA-43-2576-01 11 67059110 67059110 A T ANKRD13D Missense_Mutation p.Y145F 0.18 tolerated(0.16) probably_damaging(0.997) TCGA-43-2576-01 11 67209916 67209916 C A CORO1B Missense_Mutation p.V62L 0.17 deleterious(0.01) probably_damaging(0.975) TCGA-43-2576-01 11 68207245 68207245 G A LRP5 Missense_Mutation p.G1450D 0.21 tolerated(0.06) possibly_damaging(0.862) TCGA-43-2576-01 11 7063942 7063942 T C NLRP14 Missense_Mutation p.F229L 0.14 tolerated(0.12) probably_damaging(0.999) TCGA-43-2576-01 11 71907124 71907124 C G FOLR1 Missense_Mutation p.A226G 0.12 deleterious(0.01) probably_damaging(0.987) TCGA-43-2576-01 11 75152219 75152219 G A GDPD5 Missense_Mutation p.L488F 0.15 tolerated(0.1) benign(0.221) TCGA-43-2576-01 11 7960539 7960539 G A OR10A3 Missense_Mutation p.L177F 0.20 tolerated(1) benign(0.169) TCGA-43-2576-01 11 93097460 93097460 G A CCDC67 Silent p.E144E 0.21 TCGA-43-2576-01 12 102067316 102067316 G T MYBPC1 Nonsense_Mutation p.E902* 0.08 TCGA-43-2576-01 12 10312510 10312510 C A OLR1 Missense_Mutation p.C264F 0.22 deleterious(0) probably_damaging(1) TCGA-43-2576-01 12 103352731 103352731 T A ASCL1 Nonstop_Mutation p.*237Rext*64 0.18 TCGA-43-2576-01 12 107125919 107125919 C A RFX4 Missense_Mutation p.L464I 0.15 deleterious(0) probably_damaging(0.996) TCGA-43-2576-01 12 109838904 109838904 C T MYO1H Missense_Mutation p.P177S 0.07 deleterious(0) probably_damaging(0.999) TCGA-43-2576-01 12 109844639 109844639 A T MYO1H Nonsense_Mutation p.R321* 0.18 TCGA-43-2576-01 12 118582683 118582683 A G PEBP1 3'UTR 0.16 TCGA-43-2576-01 12 120582566 120582566 G A GCN1L1 Silent p.A1743A 0.23 TCGA-43-2576-01 12 124069333 124069333 G T TMED2 Silent p.A50A 0.17 TCGA-43-2576-01 12 124220152 124220152 G T ATP6V0A2 Missense_Mutation p.R269L 0.24 deleterious(0) probably_damaging(0.999) TCGA-43-2576-01 12 125450229 125450229 C A DHX37 Missense_Mutation p.G574C 0.19 tolerated(0.13) possibly_damaging(0.662) TCGA-43-2576-01 12 130832723 130832723 T G PIWIL1 Missense_Mutation p.S243R 0.24 tolerated(0.07) benign(0.021) TCGA-43-2576-01 12 15677819 15677819 G T PTPRO Missense_Mutation p.D655Y 0.26 deleterious(0) possibly_damaging(0.867) TCGA-43-2576-01 12 2064677 2064677 T G DCP1B Missense_Mutation p.Y191S 0.18 tolerated(0.12) benign(0.04) TCGA-43-2576-01 12 20792807 20792807 G T PDE3A Missense_Mutation p.G723C 0.13 deleterious(0.04) probably_damaging(0.995) TCGA-43-2576-01 12 20874772 20874772 G T SLCO1C1 Missense_Mutation p.W270C 0.20 deleterious(0.01) probably_damaging(1) TCGA-43-2576-01 12 20890085 20890085 G A SLCO1C1 Missense_Mutation p.C476Y 0.17 deleterious(0) probably_damaging(1) TCGA-43-2576-01 12 21446917 21446917 C G SLCO1A2 Missense_Mutation p.A467P 0.12 deleterious(0) probably_damaging(0.998) TCGA-43-2576-01 12 22440210 22440210 C G ST8SIA1 Missense_Mutation p.C85S 0.21 deleterious(0) probably_damaging(0.997) TCGA-43-2576-01 12 40012633 40012633 A G ABCD2 Missense_Mutation p.L262P 0.22 deleterious(0.01) possibly_damaging(0.633) TCGA-43-2576-01 12 44782154 44782154 G T TMEM117 Missense_Mutation p.G415V 0.21 deleterious(0) probably_damaging(0.999) TCGA-43-2576-01 12 48888759 48888759 C A C12orf54 3'UTR 0.16 TCGA-43-2576-01 12 52056845 52056845 G T SCN8A Nonsense_Mutation p.E82* 0.16 TCGA-43-2576-01 12 53045462 53045462 G A KRT2 Silent p.V155V 0.23 TCGA-43-2576-01 12 54891651 54891651 C T NCKAP1L Silent p.L26L 0.22 TCGA-43-2576-01 12 57422966 57422966 C A MYO1A Silent p.R985R 0.22 TCGA-43-2576-01 12 58347392 58347392 C A XRCC6BP1 Silent p.R153R 0.11 TCGA-43-2576-01 12 64521759 64521759 C A SRGAP1 Missense_Mutation p.P887T 0.23 tolerated(0.16) benign(0.097) TCGA-43-2576-01 12 65857074 65857074 C A MSRB3 Missense_Mutation p.P184Q 0.27 tolerated_low_confidence(0.24) benign(0.031) TCGA-43-2576-01 12 69644993 69644993 G C CPSF6 Missense_Mutation p.D49H 0.20 deleterious(0.05) unknown(0) TCGA-43-2576-01 12 69967969 69967969 G T FRS2 Missense_Mutation p.G254V 0.22 deleterious(0) possibly_damaging(0.741) TCGA-43-2576-01 12 70932705 70932705 G C PTPRB Silent p.P1956P 0.17 TCGA-43-2576-01 12 72265927 72265927 A T TBC1D15 Silent p.G36G 0.20 TCGA-43-2576-01 12 78400655 78400655 T A NAV3 Nonsense_Mutation p.L446* 0.22 TCGA-43-2576-01 12 78511901 78511901 G T NAV3 Missense_Mutation p.G955V 0.16 tolerated(0.58) benign(0.001) TCGA-43-2576-01 12 78513025 78513025 G C NAV3 Missense_Mutation p.D1017H 0.15 deleterious(0) probably_damaging(0.998) TCGA-43-2576-01 12 91449441 91449441 A T KERA Missense_Mutation p.N206K 0.20 tolerated(1) benign(0) TCGA-43-2576-01 12 9906062 9906062 G A CD69 3'UTR 0.28 TCGA-43-2576-01 13 100153982 100153982 T A TM9SF2 Missense_Mutation p.L41Q 0.22 deleterious(0) possibly_damaging(0.823) TCGA-43-2576-01 13 23907908 23907908 G T SACS Silent p.V3369V 0.13 TCGA-43-2576-01 13 32912314 32912314 G T BRCA2 Missense_Mutation p.K1274N 0.19 tolerated(0.09) benign(0.086) TCGA-43-2576-01 13 45149945 45149945 G C TSC22D1 Missense_Mutation p.S89W 0.15 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-43-2576-01 13 77785301 77785301 C A MYCBP2 Splice_Site p.X1101_splice 0.17 TCGA-43-2576-01 13 88328572 88328572 C A SLITRK5 Missense_Mutation p.P310Q 0.37 deleterious(0) possibly_damaging(0.866) TCGA-43-2576-01 14 101528420 101528420 A G MIR377 RNA 0.13 TCGA-43-2576-01 14 106692091 106692091 C A IGHV3-21 Missense_Mutation p.A12S 0.10 tolerated_low_confidence(0.09) benign(0.022) TCGA-43-2576-01 14 19553711 19553711 G T POTEG Missense_Mutation p.G99C 0.05 deleterious_low_confidence(0.02) benign(0.049) TCGA-43-2576-01 14 20010218 20010218 A T POTEM Missense_Mutation p.C314S 0.15 tolerated(0.43) possibly_damaging(0.82) TCGA-43-2576-01 14 20215924 20215924 T A OR4Q3 Missense_Mutation p.M113K 0.11 deleterious(0) benign(0.116) TCGA-43-2576-01 14 20215925 20215925 G A OR4Q3 Missense_Mutation p.M113I 0.11 tolerated(0.87) benign(0.079) TCGA-43-2576-01 14 20345166 20345166 T C OR4K2 Missense_Mutation p.V247A 0.06 deleterious(0) possibly_damaging(0.903) TCGA-43-2576-01 14 20612613 20612613 G T OR4N5 Missense_Mutation p.C240F 0.24 deleterious(0) possibly_damaging(0.774) TCGA-43-2576-01 14 21109368 21109368 G T OR6S1 Silent p.P161P 0.17 TCGA-43-2576-01 14 22670508 22670508 T G TRAV26-2 Missense_Mutation p.L11R 0.21 deleterious(0) possibly_damaging(0.831) TCGA-43-2576-01 14 23940167 23940167 G T NGDN Missense_Mutation p.G42V 0.22 deleterious(0) possibly_damaging(0.895) TCGA-43-2576-01 14 24607728 24607728 C A PSME1 Silent p.R210R 0.24 TCGA-43-2576-01 14 28733923 28733923 G C BNIP3P1 RNA 0.14 TCGA-43-2576-01 14 30098300 30098300 C A PRKD1 Splice_Site p.X558_splice 0.16 TCGA-43-2576-01 14 32902952 32902952 C G AKAP6 Missense_Mutation p.R85G 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-43-2576-01 14 45400628 45400628 T G KLHL28 Missense_Mutation p.H487P 0.23 deleterious(0.02) probably_damaging(0.992) TCGA-43-2576-01 14 45473426 45473426 T C FAM179B Missense_Mutation p.I834T 0.21 tolerated(1) benign(0) TCGA-43-2576-01 14 45628395 45628395 A T FANCM Missense_Mutation p.Q498L 0.21 deleterious(0.04) benign(0.021) TCGA-43-2576-01 14 51375628 51375628 C T PYGL Silent p.L741L 0.18 TCGA-43-2576-01 14 52907331 52907331 G A TXNDC16 Silent p.L652L 0.15 TCGA-43-2576-01 14 60976504 60976504 C G SIX6 Missense_Mutation p.Q130E 0.09 tolerated(0.97) benign(0.147) TCGA-43-2576-01 14 65253181 65253181 G T SPTB Missense_Mutation p.L1168I 0.15 tolerated(0.36) possibly_damaging(0.51) TCGA-43-2576-01 14 66209046 66209046 G T FUT8 Missense_Mutation p.R549M 0.22 tolerated(0.27) benign(0.387) TCGA-43-2576-01 14 70714051 70714051 A T ADAM21P1 RNA 0.16 TCGA-43-2576-01 14 72169064 72169064 G A SIPA1L1 Intron 0.23 TCGA-43-2576-01 14 73190364 73190364 G A DPF3 Nonsense_Mutation p.R168* 0.22 TCGA-43-2576-01 14 94084638 94084638 C A UNC79 Missense_Mutation p.A1265D 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-43-2576-01 14 95080931 95080931 C G SERPINA3 Silent p.S51S 0.18 TCGA-43-2576-01 15 100269497 100269497 T A LYSMD4 Missense_Mutation p.K242I 0.24 deleterious(0) probably_damaging(0.991) TCGA-43-2576-01 15 101013221 101013221 T C CERS3 Missense_Mutation p.I216V 0.22 tolerated(0.09) benign(0.02) TCGA-43-2576-01 15 101816775 101816775 C G VIMP Missense_Mutation p.R61T 0.12 tolerated(0.17) probably_damaging(0.956) TCGA-43-2576-01 15 20588485 20588485 C A HERC2P3 RNA 0.07 TCGA-43-2576-01 15 22368694 22368694 C A OR4M2 Missense_Mutation p.P40Q 0.10 deleterious(0.05) possibly_damaging(0.594) TCGA-43-2576-01 15 22368991 22368991 G T OR4M2 Missense_Mutation p.R139L 0.06 deleterious(0.04) benign(0.074) TCGA-43-2576-01 15 25325341 25325341 G T SNORD116-14 RNA 0.17 TCGA-43-2576-01 15 25479266 25479266 C A SNORD115-33 3'Flank 0.18 TCGA-43-2576-01 15 25924545 25924545 T C ATP10A Silent p.G1481G 0.19 TCGA-43-2576-01 15 34656472 34656472 G A LPCAT4 Missense_Mutation p.R172W 0.24 deleterious(0) probably_damaging(1) TCGA-43-2576-01 15 38229573 38229573 C A TMCO5A Missense_Mutation p.H97Q 0.12 tolerated(0.31) benign(0.034) TCGA-43-2576-01 15 45954171 45954171 A T SQRDL Missense_Mutation p.I85F 0.13 deleterious(0.02) possibly_damaging(0.673) TCGA-43-2576-01 15 48414410 48414410 T G SLC24A5 Intron 0.20 TCGA-43-2576-01 15 49584553 49584553 G C GALK2 Missense_Mutation p.W262C 0.12 tolerated(0.06) probably_damaging(0.985) TCGA-43-2576-01 15 50881825 50881825 C A TRPM7 Missense_Mutation p.R1451S 0.13 tolerated_low_confidence(0.47) benign(0.016) TCGA-43-2576-01 15 57523438 57523438 G - TCF12 Frame_Shift_Del p.S223Tfs*22 0.09 TCGA-43-2576-01 15 66839045 66839045 T C ZWILCH Splice_Site 0.12 TCGA-43-2576-01 15 77406318 77406318 C A PEAK1 3'UTR 0.31 TCGA-43-2576-01 15 77450908 77450908 C A PEAK1 Nonsense_Mutation p.G1090* 0.28 TCGA-43-2576-01 15 78783002 78783002 T C IREB2 Silent p.H741H 0.29 TCGA-43-2576-01 15 81229191 81229191 C G KIAA1199 Silent p.P1062P 0.07 TCGA-43-2576-01 15 90129040 90129040 G T TICRR Missense_Mutation p.E426D 0.10 tolerated(0.22) benign(0.029) TCGA-43-2576-01 15 90189138 90189138 G C KIF7 Silent p.T636T 0.26 TCGA-43-2576-01 15 92977544 92977544 C A ST8SIA2 Missense_Mutation p.H77N 0.10 benign(0.001) TCGA-43-2576-01 16 11773681 11773681 A T TXNDC11 Missense_Mutation p.S749R 0.11 deleterious(0) probably_damaging(0.972) TCGA-43-2576-01 16 2028689 2028689 G A TBL3 3'UTR 0.17 TCGA-43-2576-01 16 2052629 2052629 C T ZNF598 Silent p.K190K 0.23 TCGA-43-2576-01 16 21709102 21709102 C A OTOA Missense_Mutation p.S249Y 0.27 deleterious(0) probably_damaging(0.978) TCGA-43-2576-01 16 2577951 2577951 G T AMDHD2 Missense_Mutation p.R198L 0.24 tolerated(0.08) benign(0.112) TCGA-43-2576-01 16 29934682 29934682 T C KCTD13 Splice_Site p.X82_splice 0.28 TCGA-43-2576-01 16 31150402 31150402 C A PRSS36 3'UTR 0.30 TCGA-43-2576-01 16 31382513 31382513 C A ITGAX Silent p.R607R 0.21 TCGA-43-2576-01 16 47533740 47533740 G C PHKB Missense_Mutation p.Q80H 0.20 tolerated(0.06) benign(0.003) TCGA-43-2576-01 16 51173297 51173297 C A SALL1 Nonsense_Mutation p.E946* 0.24 TCGA-43-2576-01 16 65022216 65022216 G T CDH11 Silent p.A281A 0.28 TCGA-43-2576-01 16 70908223 70908223 C T HYDIN Missense_Mutation p.E3645K 0.05 possibly_damaging(0.801) TCGA-43-2576-01 16 75512583 75512583 C A CHST6 Missense_Mutation p.G382C 0.17 deleterious(0.03) benign(0.315) TCGA-43-2576-01 16 80654735 80654735 A T CDYL2 Missense_Mutation p.L311Q 0.08 deleterious(0) probably_damaging(1) TCGA-43-2576-01 16 815221 815221 C T MSLN Silent p.L208L 0.24 TCGA-43-2576-01 16 84808810 84808810 C T USP10 Nonsense_Mutation p.R730* 0.20 TCGA-43-2576-01 16 87730243 87730243 C A JPH3 Missense_Mutation p.L742M 0.20 deleterious(0) probably_damaging(0.999) TCGA-43-2576-01 17 10304026 10304026 C A MYH8 Missense_Mutation p.R1139L 0.29 deleterious(0) probably_damaging(0.922) TCGA-43-2576-01 17 11666845 11666846 - CTGCAGACT DNAH9 In_Frame_Ins p.D2364_C2365insSAD 0.16 TCGA-43-2576-01 17 11687616 11687616 G T DNAH9 Splice_Site p.X2608_splice 0.26 TCGA-43-2576-01 17 11774990 11774990 T A DNAH9 Missense_Mutation p.C3377S 0.28 benign(0.063) TCGA-43-2576-01 17 1944778 1944778 G A DPH1 Missense_Mutation p.A369T 0.09 tolerated(0.23) possibly_damaging(0.7) TCGA-43-2576-01 17 27844513 27844513 G T TAOK1 Nonsense_Mutation p.E583* 0.23 TCGA-43-2576-01 17 29664494 29664494 G T NF1 Missense_Mutation p.R2179L 0.20 deleterious(0.01) probably_damaging(0.968) TCGA-43-2576-01 17 33679299 33679299 C A SLFN11 3'UTR 0.22 TCGA-43-2576-01 17 34234091 34234091 G A AC015849.16 RNA 0.16 TCGA-43-2576-01 17 34862935 34862935 G A MYO19 Missense_Mutation p.T504I 0.19 deleterious(0.01) benign(0.224) TCGA-43-2576-01 17 35600327 35600327 C A ACACA Missense_Mutation p.S964I 0.23 deleterious(0.02) probably_damaging(0.995) TCGA-43-2576-01 17 38910151 38910151 C A KRT25 Silent p.L210L 0.21 TCGA-43-2576-01 17 38991342 38991342 A G TMEM99 Missense_Mutation p.S192G 0.24 deleterious_low_confidence(0) benign(0.294) TCGA-43-2576-01 17 39183317 39183317 C T KRTAP1-5 Missense_Mutation p.E31K 0.29 tolerated(0.65) unknown(0) TCGA-43-2576-01 17 40330364 40330364 C G KCNH4 Missense_Mutation p.G148R 0.22 tolerated(0.62) benign(0.001) TCGA-43-2576-01 17 42271491 42271491 A C ATXN7L3 3'UTR 0.29 TCGA-43-2576-01 17 42397389 42397389 C A SLC25A39 Missense_Mutation p.D354Y 0.20 deleterious(0) benign(0.221) TCGA-43-2576-01 17 4862785 4862785 C G SPAG7 3'UTR 0.24 TCGA-43-2576-01 17 61607591 61607591 G T KCNH6 Missense_Mutation p.L149F 0.23 tolerated(0.19) benign(0.273) TCGA-43-2576-01 17 61611342 61611342 C A KCNH6 Silent p.A257A 0.30 TCGA-43-2576-01 17 65962733 65962733 G A BPTF Missense_Mutation p.D2834N 0.15 probably_damaging(0.916) TCGA-43-2576-01 17 67023591 67023591 C A ABCA9 Splice_Site p.X598_splice 0.11 TCGA-43-2576-01 17 67522786 67522786 G T MAP2K6 Nonsense_Mutation p.E273* 0.20 TCGA-43-2576-01 17 72349630 72349630 C A KIF19 Intron 0.18 TCGA-43-2576-01 17 72588889 72588889 C T C17orf77 Missense_Mutation p.P235L 0.19 unknown(0) TCGA-43-2576-01 17 73096838 73096838 T A SLC16A5 Missense_Mutation p.D360E 0.23 tolerated(0.36) benign(0.072) TCGA-43-2576-01 17 7578469 7578469 C A TP53 Missense_Mutation p.G154V 0.30 deleterious(0) probably_damaging(0.961) TCGA-43-2576-01 17 7604986 7604986 G A WRAP53 Silent p.T278T 0.24 TCGA-43-2576-01 17 76219718 76219718 G T AC087645.1 Missense_Mutation p.P188T 0.18 deleterious_low_confidence(0) possibly_damaging(0.81) TCGA-43-2576-01 17 9923250 9923250 G A GAS7 Intron 0.29 TCGA-43-2576-01 18 2892427 2892427 C A EMILIN2 Missense_Mutation p.H768N 0.33 tolerated(0.06) possibly_damaging(0.678) TCGA-43-2576-01 18 28983596 28983596 T C DSG4 Silent p.N545N 0.15 TCGA-43-2576-01 18 33706523 33706523 C A SLC39A6 Missense_Mutation p.D150Y 0.21 deleterious(0.01) possibly_damaging(0.855) TCGA-43-2576-01 18 39593560 39593560 G T PIK3C3 Missense_Mutation p.S442I 0.13 tolerated(0.17) benign(0.149) TCGA-43-2576-01 18 39593561 39593561 G T PIK3C3 Splice_Site p.X442_splice 0.12 TCGA-43-2576-01 18 47101875 47101875 G T LIPG Silent p.V236V 0.16 TCGA-43-2576-01 18 77456019 77456019 G A CTDP1 Silent p.T147T 0.09 TCGA-43-2576-01 19 10597147 10597147 G A KEAP1 3'UTR 0.40 TCGA-43-2576-01 19 1080914 1080914 G T HMHA1 Nonsense_Mutation p.E697* 0.23 TCGA-43-2576-01 19 11145695 11145695 G T SMARCA4 Nonsense_Mutation p.E1353* 0.19 TCGA-43-2576-01 19 12866746 12866746 C A BEST2 Missense_Mutation p.F315L 0.21 tolerated(1) benign(0.006) TCGA-43-2576-01 19 18322614 18322614 G A PDE4C Silent p.I582I 0.11 TCGA-43-2576-01 19 18893751 18893751 C G COMP Missense_Mutation p.E750Q 0.27 tolerated(0.91) benign(0.084) TCGA-43-2576-01 19 22364366 22364366 T C ZNF676 Silent p.Q51Q 0.29 TCGA-43-2576-01 19 287501 287501 C A PPAP2C Missense_Mutation p.G173V 0.22 deleterious(0) probably_damaging(1) TCGA-43-2576-01 19 36157798 36157798 G C UPK1A Silent p.L28L 0.28 TCGA-43-2576-01 19 40540401 40540401 C A ZNF780B Missense_Mutation p.A789S 0.22 tolerated(0.18) probably_damaging(0.918) TCGA-43-2576-01 19 42526416 42526416 T A GRIK5 Missense_Mutation p.S522C 0.23 deleterious(0) possibly_damaging(0.846) TCGA-43-2576-01 19 42813971 42813971 C A PRR19 Missense_Mutation p.H79N 0.26 deleterious(0.04) benign(0.016) TCGA-43-2576-01 19 44057047 44057047 G A XRCC1 Missense_Mutation p.P242L 0.11 deleterious(0.01) benign(0.019) TCGA-43-2576-01 19 45996492 45996492 A G RTN2 Missense_Mutation p.L320P 0.11 tolerated_low_confidence(0.41) benign(0.001) TCGA-43-2576-01 19 48229156 48229156 C G EHD2 Missense_Mutation p.S197W 0.07 deleterious(0) possibly_damaging(0.892) TCGA-43-2576-01 19 49954088 49954088 C G PIH1D1 Missense_Mutation p.Q36H 0.27 deleterious(0.01) benign(0.023) TCGA-43-2576-01 19 51135940 51135940 C A SYT3 Missense_Mutation p.G93C 0.31 deleterious(0) benign(0.3) TCGA-43-2576-01 19 51219925 51219925 C A SHANK1 Missense_Mutation p.Q84H 0.28 probably_damaging(0.953) TCGA-43-2576-01 19 52663819 52663819 G A ZNF836 Missense_Mutation p.A14V 0.21 deleterious(0.03) benign(0.184) TCGA-43-2576-01 19 54754546 54754546 C T LILRB5 3'UTR 0.13 TCGA-43-2576-01 19 56370246 56370246 G A NLRP4 Nonsense_Mutation p.W496* 0.14 TCGA-43-2576-01 19 56423722 56423722 G T NLRP13 Silent p.A487A 0.36 TCGA-43-2576-01 19 56549530 56549530 A G NLRP5 Missense_Mutation p.R919G 0.12 tolerated(0.25) benign(0.021) TCGA-43-2576-01 19 56569715 56569715 A G NLRP5 Missense_Mutation p.K1137E 0.13 tolerated(1) benign(0) TCGA-43-2576-01 19 56614541 56614541 C A ZNF787 Nonsense_Mutation p.E16* 0.21 TCGA-43-2576-01 19 58085062 58085062 C G ZNF416 Missense_Mutation p.W70C 0.06 tolerated(0.46) benign(0.015) TCGA-43-2576-01 19 58928399 58928399 T G ZNF584 Missense_Mutation p.F172V 0.12 tolerated(0.09) probably_damaging(0.979) TCGA-43-2576-01 19 6495962 6495962 T C TUBB4A Missense_Mutation p.Y183C 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-43-2576-01 19 7833782 7833782 G T CLEC4M Nonsense_Mutation p.E370* 0.26 TCGA-43-2576-01 19 8808364 8808364 C A ACTL9 Missense_Mutation p.A230S 0.33 tolerated(0.51) possibly_damaging(0.811) TCGA-43-2576-01 19 9070091 9070091 C T MUC16 Silent p.R5785R 0.26 TCGA-43-2576-01 1 114184644 114184644 G C MAGI3 Missense_Mutation p.C491S 0.06 deleterious(0) probably_damaging(0.999) TCGA-43-2576-01 1 114443004 114443004 T C AP4B1 Silent p.Q212Q 0.09 TCGA-43-2576-01 1 1269429 1269429 C A TAS1R3 Missense_Mutation p.P715H 0.18 deleterious(0.03) possibly_damaging(0.839) TCGA-43-2576-01 1 1390854 1390854 G A ATAD3C Silent p.R131R 0.30 TCGA-43-2576-01 1 144903200 144903200 C A PDE4DIP Nonsense_Mutation p.E898* 0.54 TCGA-43-2576-01 1 147380712 147380712 G T GJA8 Missense_Mutation p.L210F 0.50 deleterious(0) possibly_damaging(0.887) TCGA-43-2576-01 1 150325414 150325414 G T PRPF3 Missense_Mutation p.D671Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-43-2576-01 1 151239874 151239874 A T PSMD4 3'UTR 0.43 TCGA-43-2576-01 1 155207294 155207294 C A GBA Silent p.L279L 0.48 TCGA-43-2576-01 1 156351154 156351154 G C RHBG Missense_Mutation p.W230C 0.15 deleterious(0) probably_damaging(0.983) TCGA-43-2576-01 1 158390454 158390454 C A OR10K2 Missense_Mutation p.C68F 0.11 tolerated(1) benign(0.336) TCGA-43-2576-01 1 158435634 158435634 C A OR10K1 Missense_Mutation p.L95M 0.04 tolerated(0.32) benign(0.01) TCGA-43-2576-01 1 158435637 158435637 G T OR10K1 Missense_Mutation p.G96C 0.12 tolerated(0.06) probably_damaging(0.992) TCGA-43-2576-01 1 158687675 158687675 G T OR6K3 Silent p.T77T 0.37 TCGA-43-2576-01 1 161047483 161047483 C A PVRL4 Missense_Mutation p.G164C 0.06 deleterious(0.01) probably_damaging(0.992) TCGA-43-2576-01 1 161561020 161561020 C A FCGR2C 5'Flank 0.13 TCGA-43-2576-01 1 161594164 161594164 G T FCGR3B 3'UTR 0.33 TCGA-43-2576-01 1 171621437 171621437 G A MYOC Silent p.D105D 0.37 TCGA-43-2576-01 1 175355342 175355342 G A TNR Missense_Mutation p.L535F 0.38 tolerated(0.18) possibly_damaging(0.841) TCGA-43-2576-01 1 178745920 178745920 G T RALGPS2 Missense_Mutation p.Q7H 0.21 tolerated_low_confidence(0.13) possibly_damaging(0.669) TCGA-43-2576-01 1 180151404 180151404 C - QSOX1 Frame_Shift_Del p.S236Lfs*51 0.11 TCGA-43-2576-01 1 1956833 1956833 C A GABRD Missense_Mutation p.A81D 0.30 deleterious(0) probably_damaging(0.922) TCGA-43-2576-01 1 196883755 196883755 C A CFHR4 Silent p.S436S 0.13 TCGA-43-2576-01 1 197072293 197072293 C G ASPM Missense_Mutation p.A2030P 0.03 deleterious(0.01) probably_damaging(0.998) TCGA-43-2576-01 1 201036039 201036039 A C CACNA1S Missense_Mutation p.V878G 0.14 deleterious(0) probably_damaging(0.961) TCGA-43-2576-01 1 204379350 204379350 C G PPP1R15B Missense_Mutation p.G397A 0.10 tolerated(0.22) benign(0.026) TCGA-43-2576-01 1 206240133 206240133 C T C1orf186 Splice_Site p.X106_splice 0.15 TCGA-43-2576-01 1 207225553 207225553 C G YOD1 5'Flank 0.15 TCGA-43-2576-01 1 207649656 207649656 G T CR2 Nonsense_Mutation p.G932* 0.29 TCGA-43-2576-01 1 210012275 210012275 C T DIEXF Missense_Mutation p.R362W 0.08 deleterious(0) probably_damaging(1) TCGA-43-2576-01 1 21013945 21013945 C T KIF17 Missense_Mutation p.R625K 0.16 tolerated_low_confidence(0.31) benign(0.075) TCGA-43-2576-01 1 228363243 228363243 G T IBA57 3'UTR 0.13 TCGA-43-2576-01 1 228598751 228598751 G A TRIM17 Missense_Mutation p.L218F 0.17 deleterious(0) probably_damaging(0.998) TCGA-43-2576-01 1 233802461 233802461 A G KCNK1 Missense_Mutation p.H159R 0.32 tolerated(0.19) benign(0.037) TCGA-43-2576-01 1 235324560 235324560 C A RBM34 5'UTR 0.12 TCGA-43-2576-01 1 237765388 237765388 C T RYR2 Nonsense_Mutation p.Q1554* 0.26 TCGA-43-2576-01 1 242451803 242451803 C A PLD5 Missense_Mutation p.G119V 0.15 deleterious(0) probably_damaging(0.959) TCGA-43-2576-01 1 242451804 242451804 C G PLD5 Missense_Mutation p.G119R 0.11 deleterious(0.03) probably_damaging(0.94) TCGA-43-2576-01 1 244662364 244662364 G A C1orf101 Missense_Mutation p.A138T 0.10 deleterious(0) probably_damaging(1) TCGA-43-2576-01 1 247592924 247592924 G A NLRP3 Missense_Mutation p.G732S 0.12 tolerated(0.17) benign(0.009) TCGA-43-2576-01 1 247597555 247597555 G T NLRP3 Missense_Mutation p.L826F 0.08 tolerated(0.2) benign(0.001) TCGA-43-2576-01 1 247654764 247654764 G C OR2W5 RNA 0.13 TCGA-43-2576-01 1 247921322 247921322 G T OR1C1 Silent p.P129P 0.19 TCGA-43-2576-01 1 248039403 248039403 G A TRIM58 Nonsense_Mutation p.W358* 0.27 TCGA-43-2576-01 1 248262995 248262995 G T OR2L13 Missense_Mutation p.M106I 0.09 deleterious(0.04) benign(0.005) TCGA-43-2576-01 1 248458861 248458861 G T OR2T12 Missense_Mutation p.T7N 0.13 tolerated(0.13) possibly_damaging(0.558) TCGA-43-2576-01 1 248525674 248525674 G A OR2T4 Silent p.E264E 0.24 TCGA-43-2576-01 1 248637120 248637120 G A OR2T3 Missense_Mutation p.G157R 0.18 deleterious(0.01) probably_damaging(1) TCGA-43-2576-01 1 248685784 248685784 C T OR2G6 Silent p.T279T 0.15 TCGA-43-2576-01 1 29581896 29581896 G T PTPRU Silent p.R61R 0.24 TCGA-43-2576-01 1 36023606 36023606 A G NCDN 5'UTR 0.40 TCGA-43-2576-01 1 36499777 36499777 G T AGO3 Nonsense_Mutation p.E532* 0.33 TCGA-43-2576-01 1 37267600 37267600 G T GRIK3 Missense_Mutation p.T871N 0.32 tolerated(0.11) benign(0.142) TCGA-43-2576-01 1 43888801 43888801 G T SZT2 Missense_Mutation p.R690L 0.21 tolerated(0.09) benign(0.027) TCGA-43-2576-01 1 57383247 57383247 C A C8A Missense_Mutation p.A538E 0.14 deleterious(0.01) possibly_damaging(0.548) TCGA-43-2576-01 1 57383248 57383248 A G C8A Silent p.A538A 0.14 TCGA-43-2576-01 1 62740431 62740431 G A KANK4 Silent p.A115A 0.12 TCGA-43-2576-01 1 75038716 75038716 G A C1orf173 Missense_Mutation p.S893F 0.23 deleterious(0.04) benign(0.037) TCGA-43-2576-01 1 75596315 75596315 T A LHX8 5'UTR 0.21 TCGA-43-2576-01 1 75606727 75606727 C A LHX8 Missense_Mutation p.L109I 0.24 deleterious(0) probably_damaging(0.988) TCGA-43-2576-01 1 76356438 76356438 G A MSH4 Missense_Mutation p.G762S 0.21 deleterious(0.01) probably_damaging(0.989) TCGA-43-2576-01 1 86334303 86334303 G C COL24A1 Missense_Mutation p.P1067A 0.22 tolerated(0.1) benign(0.424) TCGA-43-2576-01 1 89734478 89734478 A T GBP5 Silent p.P84P 0.19 TCGA-43-2576-01 1 90493118 90493118 A T ZNF326 Missense_Mutation p.Q536L 0.31 tolerated_low_confidence(0.21) unknown(0) TCGA-43-2576-01 1 91404778 91404778 A G ZNF644 Silent p.I711I 0.21 TCGA-43-2576-01 1 93730395 93730395 G A CCDC18 Silent p.L1327L 0.18 TCGA-43-2576-01 20 1961451 1961451 G T PDYN Missense_Mutation p.L95M 0.31 deleterious(0.02) benign(0.254) TCGA-43-2576-01 20 21687029 21687029 G C PAX1 Intron 0.23 TCGA-43-2576-01 20 30584374 30584374 G A XKR7 Missense_Mutation p.R285Q 0.22 deleterious(0) possibly_damaging(0.821) TCGA-43-2576-01 20 31625373 31625373 G A BPIFB6 Silent p.V225V 0.23 TCGA-43-2576-01 20 33068947 33068947 C A ITCH Missense_Mutation p.H718N 0.22 deleterious(0) possibly_damaging(0.558) TCGA-43-2576-01 20 37378830 37378830 A T ACTR5 Missense_Mutation p.I185F 0.32 deleterious(0) possibly_damaging(0.902) TCGA-43-2576-01 20 37536513 37536513 C G PPP1R16B Missense_Mutation p.I321M 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-43-2576-01 20 42695384 42695384 C A TOX2 Silent p.I457I 0.22 TCGA-43-2576-01 20 44527061 44527061 C A CTSA Missense_Mutation p.S490Y 0.14 tolerated(0.13) benign(0.071) TCGA-43-2576-01 20 55910512 55910512 G T SPO11 Splice_Site p.X212_splice 0.08 TCGA-43-2576-01 20 62166398 62166398 C G PTK6 Missense_Mutation p.C82S 0.13 tolerated(0.69) benign(0.008) TCGA-43-2576-01 20 7875811 7875811 C A HAO1 Missense_Mutation p.G261V 0.10 deleterious(0) probably_damaging(1) TCGA-43-2576-01 20 7875812 7875812 C A HAO1 Missense_Mutation p.G261W 0.10 deleterious(0) probably_damaging(1) TCGA-43-2576-01 21 10920083 10920083 C G TPTE Splice_Site p.X390_splice 0.06 TCGA-43-2576-01 21 10920125 10920125 T A TPTE Missense_Mutation p.T377S 0.06 tolerated(1) benign(0.041) TCGA-43-2576-01 21 10942735 10942735 C G TPTE Missense_Mutation p.D236H 0.04 deleterious(0) probably_damaging(0.999) TCGA-43-2576-01 21 30715014 30715014 G C BACH1 Missense_Mutation p.G691R 0.30 tolerated(0.39) benign(0.01) TCGA-43-2576-01 21 44189233 44189233 G T PDE9A Missense_Mutation p.V520F 0.16 deleterious(0) probably_damaging(0.995) TCGA-43-2576-01 21 45941826 45941826 C G TSPEAR Missense_Mutation p.K502N 0.34 tolerated(0.36) benign(0.009) TCGA-43-2576-01 22 16267043 16267043 T A POTEH Missense_Mutation p.N469I 0.05 deleterious(0) probably_damaging(0.999) TCGA-43-2576-01 22 17072868 17072868 G T CCT8L2 Silent p.I191I 0.16 TCGA-43-2576-01 22 19196538 19196538 G C CLTCL1 Silent p.A1112A 0.24 TCGA-43-2576-01 22 22937299 22937299 C A IGLV3-32 Silent p.T39T 0.14 TCGA-43-2576-01 22 30866239 30866239 C A SEC14L3 Missense_Mutation p.R45L 0.21 deleterious(0.01) possibly_damaging(0.858) TCGA-43-2576-01 22 32239787 32239787 T C DEPDC5 Silent p.S921S 0.11 TCGA-43-2576-01 22 32555238 32555238 C A C22orf42 5'UTR 0.17 TCGA-43-2576-01 22 33265085 33265085 C A SYN3 Silent p.L163L 0.15 TCGA-43-2576-01 22 44586520 44586520 G T PARVG Missense_Mutation p.V160F 0.31 deleterious(0) probably_damaging(0.97) TCGA-43-2576-01 2 102957289 102957289 G A IL1RL1 Splice_Site p.X204_splice 0.12 TCGA-43-2576-01 2 102965546 102965546 G T IL1RL1 Missense_Mutation p.K375N 0.11 deleterious(0) probably_damaging(0.997) TCGA-43-2576-01 2 103095481 103095481 C A SLC9A4 Missense_Mutation p.P147H 0.12 deleterious(0) probably_damaging(0.992) TCGA-43-2576-01 2 113785561 113785561 G T IL36B Intron 0.10 TCGA-43-2576-01 2 116599950 116599950 A T DPP10 3'Flank 0.25 TCGA-43-2576-01 2 120404537 120404537 C A PCDP1 Nonsense_Mutation p.C743* 0.16 TCGA-43-2576-01 2 121107282 121107282 G T INHBB Silent p.T352T 0.23 TCGA-43-2576-01 2 125405520 125405520 C A CNTNAP5 Missense_Mutation p.L687M 0.18 deleterious(0) probably_damaging(0.999) TCGA-43-2576-01 2 131486761 131486761 A G GPR148 Missense_Mutation p.T13A 0.15 tolerated(0.16) benign(0.002) TCGA-43-2576-01 2 141081587 141081587 C A LRP1B Missense_Mutation p.G4130V 0.16 probably_damaging(0.953) TCGA-43-2576-01 2 145157687 145157687 G T ZEB2 Missense_Mutation p.S356Y 0.07 deleterious(0) probably_damaging(0.998) TCGA-43-2576-01 2 149216329 149216329 T C MBD5 Translation_Start_Site p.M1? 0.12 deleterious(0) unknown(0) TCGA-43-2576-01 2 155099387 155099387 G T GALNT13 Nonsense_Mutation p.E219* 0.17 TCGA-43-2576-01 2 167992471 167992471 G T XIRP2 Missense_Mutation p.G154V 0.03 benign(0.256) TCGA-43-2576-01 2 168099752 168099752 C G XIRP2 Missense_Mutation p.T617S 0.11 probably_damaging(0.956) TCGA-43-2576-01 2 173355809 173355809 A G ITGA6 Missense_Mutation p.R913G 0.22 tolerated(0.92) benign(0.001) TCGA-43-2576-01 2 179478573 179478573 G T TTN Silent p.G16479G 0.23 TCGA-43-2576-01 2 179489434 179489434 G C TTN Missense_Mutation p.P14858R 0.10 TCGA-43-2576-01 2 179500819 179500819 C A TTN Missense_Mutation p.V13827L 0.23 TCGA-43-2576-01 2 179639903 179639903 C A TTN Nonsense_Mutation p.E2179* 0.16 TCGA-43-2576-01 2 180348102 180348102 G A ZNF385B Silent p.D189D 0.23 TCGA-43-2576-01 2 190719415 190719415 G T PMS1 Missense_Mutation p.D473Y 0.17 tolerated(0.06) benign(0.092) TCGA-43-2576-01 2 202074185 202074185 G T CASP10 Missense_Mutation p.G439C 0.16 deleterious(0) probably_damaging(1) TCGA-43-2576-01 2 204820437 204820437 A T ICOS Missense_Mutation p.D46V 0.16 deleterious(0.02) benign(0.23) TCGA-43-2576-01 2 207482388 207482388 G T ADAM23 3'UTR 0.21 TCGA-43-2576-01 2 207482389 207482389 G T ADAM23 3'UTR 0.21 TCGA-43-2576-01 2 207564484 207564484 G T DYTN Missense_Mutation p.T229N 0.18 tolerated(0.34) benign(0.05) TCGA-43-2576-01 2 213291072 213291072 C A ERBB4 Intron 0.21 TCGA-43-2576-01 2 217528736 217528736 G T IGFBP2 Missense_Mutation p.G296V 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-43-2576-01 2 220501409 220501409 G T SLC4A3 Missense_Mutation p.R810L 0.09 deleterious(0.05) benign(0.052) TCGA-43-2576-01 2 225661131 225661131 C T DOCK10 Missense_Mutation p.V1614M 0.31 deleterious(0) probably_damaging(0.999) TCGA-43-2576-01 2 227661624 227661624 C A IRS1 Missense_Mutation p.G611C 0.13 deleterious(0) probably_damaging(1) TCGA-43-2576-01 2 228194339 228194339 G T MFF 5'UTR 0.21 TCGA-43-2576-01 2 230634022 230634022 C A TRIP12 Missense_Mutation p.G1868V 0.09 deleterious(0) probably_damaging(1) TCGA-43-2576-01 2 232458621 232458621 T A C2orf57 Missense_Mutation p.L320Q 0.14 deleterious(0.01) possibly_damaging(0.877) TCGA-43-2576-01 2 241535798 241535798 G C CAPN10 Silent p.A447A 0.18 TCGA-43-2576-01 2 32517291 32517291 A T YIPF4 Silent p.R93R 0.11 TCGA-43-2576-01 2 36775695 36775695 T A CRIM1 Missense_Mutation p.S988T 0.21 tolerated_low_confidence(0.46) probably_damaging(0.914) TCGA-43-2576-01 2 37353461 37353461 G A EIF2AK2 Silent p.Y293Y 0.20 TCGA-43-2576-01 2 39082254 39082254 C G DHX57 Missense_Mutation p.R617T 0.27 deleterious(0) probably_damaging(1) TCGA-43-2576-01 2 39963818 39963818 C A THUMPD2 3'UTR 0.38 TCGA-43-2576-01 2 48807992 48807992 G T STON1-GTF2A1L Nonsense_Mutation p.G74* 0.25 TCGA-43-2576-01 2 50149384 50149384 G T NRXN1 Missense_Mutation p.P1448T 0.12 deleterious_low_confidence(0) benign(0.022) TCGA-43-2576-01 2 63282842 63282842 A T OTX1 Silent p.A152A 0.37 TCGA-43-2576-01 2 80816495 80816495 C A CTNNA2 Missense_Mutation p.Q692K 0.33 tolerated(0.94) benign(0.008) TCGA-43-2576-01 2 88082620 88082620 A T RGPD2 Missense_Mutation p.V1308D 0.23 deleterious(0.05) possibly_damaging(0.683) TCGA-43-2576-01 2 88383859 88383859 C A SMYD1 Silent p.T54T 0.23 TCGA-43-2576-01 2 97007486 97007486 G T NCAPH Silent p.A42A 0.26 TCGA-43-2576-01 2 98373600 98373600 C A TMEM131 Missense_Mutation p.D1872Y 0.12 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-43-2576-01 2 99013129 99013129 G A CNGA3 Missense_Mutation p.R499Q 0.15 tolerated(0.9) benign(0.009) TCGA-43-2576-01 3 100484732 100484732 C T ABI3BP Missense_Mutation p.M890I 0.16 tolerated(0.5) benign(0) TCGA-43-2576-01 3 112713982 112713982 G C GTPBP8 Missense_Mutation p.G146R 0.11 deleterious(0) probably_damaging(0.977) TCGA-43-2576-01 3 119306331 119306331 G A ADPRH Nonsense_Mutation p.W227* 0.10 TCGA-43-2576-01 3 120469770 120469770 G T GTF2E1 Missense_Mutation p.R124L 0.16 deleterious(0) probably_damaging(0.999) TCGA-43-2576-01 3 121400675 121400675 T C GOLGB1 Missense_Mutation p.Q2911R 0.06 benign(0.127) TCGA-43-2576-01 3 124114023 124114023 G C KALRN Missense_Mutation p.E666D 0.18 tolerated(1) unknown(0) TCGA-43-2576-01 3 130659472 130659472 A T ATP2C1 Splice_Site p.X155_splice 0.24 TCGA-43-2576-01 3 134323273 134323273 C T KY Silent p.T378T 0.09 TCGA-43-2576-01 3 140406665 140406665 C T TRIM42 Missense_Mutation p.L381F 0.14 deleterious(0.04) benign(0.152) TCGA-43-2576-01 3 140409815 140409815 C A TRIM42 Nonsense_Mutation p.Y622* 0.22 TCGA-43-2576-01 3 164756887 164756887 A T SI Silent p.A760A 0.12 TCGA-43-2576-01 3 164764696 164764696 G A SI Missense_Mutation p.A607V 0.23 deleterious(0.01) benign(0.156) TCGA-43-2576-01 3 169854339 169854339 T A PHC3 Missense_Mutation p.T263S 0.20 tolerated(0.16) benign(0.228) TCGA-43-2576-01 3 172096227 172096227 G T FNDC3B Splice_Site p.X1059_splice 0.32 TCGA-43-2576-01 3 173322612 173322612 G A NLGN1 Missense_Mutation p.G75E 0.19 tolerated(0.1) probably_damaging(0.999) TCGA-43-2576-01 3 173998414 173998414 A G NLGN1 Missense_Mutation p.Y598C 0.20 deleterious(0) probably_damaging(0.999) TCGA-43-2576-01 3 180324079 180324079 A T TTC14 Missense_Mutation p.H323L 0.21 deleterious(0.03) probably_damaging(0.993) TCGA-43-2576-01 3 183273369 183273369 C A KLHL6 Missense_Mutation p.A25S 0.24 tolerated_low_confidence(0.88) benign(0.001) TCGA-43-2576-01 3 195022697 195022697 G A ACAP2 Silent p.H441H 0.20 TCGA-43-2576-01 3 195515946 195515946 G A MUC4 Silent p.S835S 0.22 TCGA-43-2576-01 3 50334201 50334201 C A NAT6 Missense_Mutation p.A254S 0.07 tolerated(0.29) benign(0.015) TCGA-43-2576-01 3 54596951 54596951 G T CACNA2D3 Missense_Mutation p.Q223H 0.25 deleterious(0.02) probably_damaging(0.998) TCGA-43-2576-01 3 88104485 88104485 C A CGGBP1 3'UTR 0.21 TCGA-43-2576-01 3 9089088 9089088 C A SRGAP3 Missense_Mutation p.Q465H 0.26 deleterious(0.01) probably_damaging(0.991) TCGA-43-2576-01 3 9515061 9515061 C A SETD5 Missense_Mutation p.H1113N 0.14 tolerated(0.35) benign(0.001) TCGA-43-2576-01 4 126369713 126369713 C T FAT4 Silent p.H2514H 0.27 TCGA-43-2576-01 4 169393014 169393014 A T DDX60L Missense_Mutation p.C50S 0.32 deleterious(0.05) benign(0.175) TCGA-43-2576-01 4 178357451 178357451 C A AGA Missense_Mutation p.G226V 0.27 deleterious(0) probably_damaging(1) TCGA-43-2576-01 4 186379897 186379897 T C CCDC110 Missense_Mutation p.Q615R 0.29 deleterious(0.04) possibly_damaging(0.69) TCGA-43-2576-01 4 20618556 20618556 G T SLIT2 Missense_Mutation p.A1291S 0.16 tolerated(0.73) benign(0.345) TCGA-43-2576-01 4 20760467 20760467 T G KCNIP4 Missense_Mutation p.Y112S 0.19 deleterious(0) probably_damaging(1) TCGA-43-2576-01 4 36214075 36214075 C - ARAP2 Frame_Shift_Del p.G359Efs*29 0.26 TCGA-43-2576-01 4 38907482 38907482 A C FAM114A1 Silent p.T219T 0.21 TCGA-43-2576-01 4 38907483 38907483 G A FAM114A1 Splice_Site p.X219_splice 0.22 TCGA-43-2576-01 4 46043022 46043022 C A GABRG1 Missense_Mutation p.G461C 0.29 tolerated(0.11) possibly_damaging(0.903) TCGA-43-2576-01 4 46043249 46043249 C A GABRG1 Missense_Mutation p.G385V 0.20 tolerated(0.31) possibly_damaging(0.9) TCGA-43-2576-01 4 53348 53348 G T ZNF595 5'UTR 0.07 TCGA-43-2576-01 4 55561943 55561943 T C KIT Silent p.V111V 0.36 TCGA-43-2576-01 4 55598132 55598132 G T KIT Missense_Mutation p.A777S 0.27 deleterious(0.01) possibly_damaging(0.868) TCGA-43-2576-01 4 56233806 56233806 T C SRD5A3 Missense_Mutation p.L205P 0.27 deleterious(0.02) probably_damaging(0.986) TCGA-43-2576-01 4 6107239 6107239 G T JAKMIP1 Missense_Mutation p.H195Q 0.13 tolerated(0.39) benign(0.006) TCGA-43-2576-01 4 62845491 62845491 G C LPHN3 Splice_Site p.X937_splice 0.30 TCGA-43-2576-01 4 65175574 65175574 T C TECRL Silent p.A209A 0.24 TCGA-43-2576-01 4 673762 673762 A G MYL5 Missense_Mutation p.I83V 0.29 tolerated(0.06) benign(0.026) TCGA-43-2576-01 4 71469164 71469164 G T AMBN Missense_Mutation p.G247V 0.31 tolerated(0.14) possibly_damaging(0.647) TCGA-43-2576-01 4 84374535 84374535 A T HELQ Missense_Mutation p.S287R 0.24 tolerated(0.17) benign(0.001) TCGA-43-2576-01 4 89199602 89199602 G T PPM1K Missense_Mutation p.P45H 0.22 tolerated_low_confidence(0.56) benign(0) TCGA-43-2576-01 4 90170698 90170698 C A GPRIN3 Missense_Mutation p.E188D 0.34 tolerated(1) benign(0.001) TCGA-43-2576-01 4 94690472 94690472 C T GRID2 Silent p.G824G 0.07 TCGA-43-2576-01 4 95585138 95585138 G T PDLIM5 Nonsense_Mutation p.E600* 0.19 TCGA-43-2576-01 5 108168596 108168596 G A FER Silent p.K111K 0.28 TCGA-43-2576-01 5 110836810 110836810 C A STARD4 Missense_Mutation p.C96F 0.27 deleterious(0.01) probably_damaging(0.975) TCGA-43-2576-01 5 128369024 128369024 G A SLC27A6 3'UTR 0.36 TCGA-43-2576-01 5 134059350 134059350 T C SEC24A Missense_Mutation p.Y1053H 0.19 tolerated(0.91) benign(0.006) TCGA-43-2576-01 5 140203119 140203119 G T PCDHA5 Missense_Mutation p.G587C 0.40 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-43-2576-01 5 140603144 140603144 T A PCDHB14 Missense_Mutation p.L23M 0.33 tolerated_low_confidence(0.3) possibly_damaging(0.73) TCGA-43-2576-01 5 140810699 140810699 G T PCDHGA12 Missense_Mutation p.D125Y 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-43-2576-01 5 141023988 141023988 G A FCHSD1 Silent p.L554L 0.35 TCGA-43-2576-01 5 156592611 156592611 G A FAM71B Missense_Mutation p.S190F 0.29 deleterious(0) benign(0.089) TCGA-43-2576-01 5 176737441 176737441 T C MXD3 Missense_Mutation p.R103G 0.32 deleterious(0) possibly_damaging(0.848) TCGA-43-2576-01 5 176895877 176895877 C A DBN1 Missense_Mutation p.G39V 0.27 deleterious(0) possibly_damaging(0.886) TCGA-43-2576-01 5 178138996 178138996 C A ZNF354A 3'UTR 0.28 TCGA-43-2576-01 5 179290780 179290780 G C TBC1D9B Missense_Mutation p.Q1141E 0.26 tolerated(0.93) benign(0.027) TCGA-43-2576-01 5 179545641 179545641 G A RASGEF1C Missense_Mutation p.R351C 0.35 deleterious(0.02) benign(0.224) TCGA-43-2576-01 5 180631658 180631658 C T TRIM7 Silent p.V151V 0.33 TCGA-43-2576-01 5 23527186 23527186 C A PRDM9 Silent p.P663P 0.23 TCGA-43-2576-01 5 26915853 26915853 C A CDH9 Silent p.G136G 0.22 TCGA-43-2576-01 5 33616094 33616094 T C ADAMTS12 Missense_Mutation p.I743V 0.19 tolerated(0.32) benign(0.074) TCGA-43-2576-01 5 35086373 35086373 C A PRLR Missense_Mutation p.W47L 0.18 deleterious(0) probably_damaging(0.999) TCGA-43-2576-01 5 37125377 37125377 T A C5orf42 Missense_Mutation p.E2922V 0.12 deleterious(0) probably_damaging(1) TCGA-43-2576-01 5 38448420 38448420 G A EGFLAM Missense_Mutation p.E836K 0.09 tolerated(0.07) benign(0.077) TCGA-43-2576-01 5 40958182 40958182 G C C7 Silent p.V436V 0.26 TCGA-43-2576-01 5 50090044 50090044 C T PARP8 Silent p.I247I 0.15 TCGA-43-2576-01 5 55112290 55112290 G T DDX4 Splice_Site p.X700_splice 0.17 TCGA-43-2576-01 5 55112291 55112291 G T DDX4 Missense_Mutation p.G700C 0.15 deleterious(0) benign(0.06) TCGA-43-2576-01 5 70805414 70805414 A T BDP1 Missense_Mutation p.E832V 0.20 tolerated(0.12) possibly_damaging(0.854) TCGA-43-2576-01 5 70805415 70805415 G T BDP1 Missense_Mutation p.E832D 0.20 tolerated(0.14) benign(0.131) TCGA-43-2576-01 5 70820015 70820015 C G BDP1 Missense_Mutation p.D1879E 0.10 tolerated(1) benign(0.008) TCGA-43-2576-01 5 76259230 76259230 G C CRHBP Missense_Mutation p.L252F 0.18 tolerated(0.07) possibly_damaging(0.822) TCGA-43-2576-01 5 76704778 76704778 G T PDE8B Missense_Mutation p.D476Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-43-2576-01 5 78111832 78111832 G A ARSB Intron 0.33 TCGA-43-2576-01 6 112671390 112671390 G T RFPL4B Silent p.L160L 0.12 TCGA-43-2576-01 6 117250119 117250119 C G RFX6 Missense_Mutation p.R866G 0.20 tolerated_low_confidence(0.11) benign(0.02) TCGA-43-2576-01 6 118887069 118887069 C A CEP85L Missense_Mutation p.D218Y 0.16 deleterious(0) probably_damaging(0.988) TCGA-43-2576-01 6 126080926 126080926 G T HEY2 Missense_Mutation p.G331V 0.21 deleterious(0) probably_damaging(1) TCGA-43-2576-01 6 154414624 154414624 T C OPRM1 Intron 0.23 TCGA-43-2576-01 6 154414625 154414625 T A OPRM1 Intron 0.22 TCGA-43-2576-01 6 160828077 160828077 G T SLC22A3 Missense_Mutation p.G180C 0.17 deleterious(0) probably_damaging(1) TCGA-43-2576-01 6 160857897 160857897 T C SLC22A3 Missense_Mutation p.L354P 0.20 deleterious(0) probably_damaging(0.998) TCGA-43-2576-01 6 165703504 165703504 C A C6orf118 Missense_Mutation p.K391N 0.17 deleterious(0.02) probably_damaging(0.979) TCGA-43-2576-01 6 25914851 25914851 G A SLC17A2 Nonsense_Mutation p.Q371* 0.29 TCGA-43-2576-01 6 26108194 26108194 G C HIST1H1T Missense_Mutation p.S43C 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-43-2576-01 6 27860888 27860888 T C HIST1H2AM Missense_Mutation p.K14E 0.11 deleterious_low_confidence(0.02) unknown(0) TCGA-43-2576-01 6 32139163 32139163 C A AGPAT1 Missense_Mutation p.K37N 0.20 deleterious(0) benign(0.347) TCGA-43-2576-01 6 33138675 33138675 C A COL11A2 Missense_Mutation p.G1043V 0.17 probably_damaging(0.979) TCGA-43-2576-01 6 35378866 35378866 T C PPARD Translation_Start_Site p.M1? 0.24 deleterious_low_confidence(0.01) unknown(0) TCGA-43-2576-01 6 35755757 35755757 G T CLPSL1 Missense_Mutation p.R112S 0.15 tolerated(0.05) benign(0.097) TCGA-43-2576-01 6 36287253 36287253 G T C6orf222 Nonsense_Mutation p.Y601* 0.26 TCGA-43-2576-01 6 40399990 40399990 G T LRFN2 Missense_Mutation p.P288Q 0.10 tolerated(0.06) possibly_damaging(0.831) TCGA-43-2576-01 6 44797465 44797465 G A SUPT3H 3'UTR 0.12 TCGA-43-2576-01 6 46826988 46826988 G C GPR116 Missense_Mutation p.D884E 0.24 tolerated(0.26) benign(0.012) TCGA-43-2576-01 6 54254761 54254761 A T TINAG 3'UTR 0.16 TCGA-43-2576-01 6 62390927 62390927 C A KHDRBS2 Missense_Mutation p.A331S 0.15 deleterious(0.03) probably_damaging(0.987) TCGA-43-2576-01 6 66204963 66204963 C G EYS Missense_Mutation p.C114S 0.16 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-43-2576-01 6 66205364 66205364 T C EYS 5'UTR 0.29 TCGA-43-2576-01 6 66205369 66205369 C A EYS 5'UTR 0.09 TCGA-43-2576-01 6 75799927 75799927 G A COL12A1 Missense_Mutation p.P2947L 0.18 probably_damaging(1) TCGA-43-2576-01 6 76660485 76660485 C A IMPG1 Missense_Mutation p.V540F 0.27 tolerated(0.08) benign(0.035) TCGA-43-2576-01 6 84233999 84233999 T C PRSS35 Missense_Mutation p.L280P 0.18 deleterious(0) probably_damaging(0.999) TCGA-43-2576-01 6 87971073 87971073 G T ZNF292 Nonsense_Mutation p.E2576* 0.26 TCGA-43-2576-01 6 89868157 89868157 T C PM20D2 Silent p.D342D 0.14 TCGA-43-2576-01 6 93955102 93955102 T C EPHA7 Silent p.L932L 0.17 TCGA-43-2576-01 6 97681850 97681850 T C MMS22L Missense_Mutation p.I397V 0.23 tolerated(0.9) benign(0.007) TCGA-43-2576-01 6 99323439 99323439 C T FBXL4 Silent p.L518L 0.23 TCGA-43-2576-01 7 100732058 100732058 C T TRIM56 Missense_Mutation p.P489S 0.19 deleterious(0.01) possibly_damaging(0.637) TCGA-43-2576-01 7 100777095 100777098 ACCA - SERPINE1 Frame_Shift_Del p.N275Ffs*2 0.11 TCGA-43-2576-01 7 111448890 111448890 C A DOCK4 Missense_Mutation p.M1051I 0.33 deleterious(0) benign(0.423) TCGA-43-2576-01 7 1132361 1132361 G A GPER1 Missense_Mutation p.D333N 0.12 tolerated(0.08) possibly_damaging(0.517) TCGA-43-2576-01 7 11447000 11447000 G A THSD7A Silent p.C1283C 0.33 TCGA-43-2576-01 7 11676473 11676473 G C THSD7A Silent p.A102A 0.37 TCGA-43-2576-01 7 127976058 127976058 C T RBM28 Missense_Mutation p.V218I 0.11 tolerated(0.38) benign(0.001) TCGA-43-2576-01 7 141758013 141758013 G - MGAM Frame_Shift_Del p.P1236Lfs*2 0.34 TCGA-43-2576-01 7 142499102 142499102 G C TRBC2 Missense_Mutation p.G127R 0.22 deleterious(0) probably_damaging(1) TCGA-43-2576-01 7 14622723 14622723 T A DGKB Missense_Mutation p.L492F 0.15 deleterious(0) probably_damaging(0.998) TCGA-43-2576-01 7 149152779 149152779 T G ZNF777 Missense_Mutation p.E112A 0.41 tolerated_low_confidence(0.19) benign(0.002) TCGA-43-2576-01 7 153584786 153584786 G C DPP6 Missense_Mutation p.M6I 0.31 tolerated(0.43) benign(0.002) TCGA-43-2576-01 7 21641047 21641047 A G DNAH11 Silent p.T1153T 0.31 TCGA-43-2576-01 7 24874183 24874183 C T OSBPL3 Silent p.L556L 0.07 TCGA-43-2576-01 7 26235482 26235482 C A HNRNPA2B1 Nonsense_Mutation p.G248* 0.08 TCGA-43-2576-01 7 30825581 30825581 G A FAM188B Missense_Mutation p.M212I 0.29 deleterious(0.05) benign(0.283) TCGA-43-2576-01 7 31855624 31855624 A G PDE1C Missense_Mutation p.V636A 0.09 tolerated_low_confidence(0.35) benign(0.001) TCGA-43-2576-01 7 38403032 38403032 C A TRGV2 5'UTR 0.24 TCGA-43-2576-01 7 40277309 40277309 A T SUGCT Missense_Mutation p.H194L 0.25 deleterious(0) possibly_damaging(0.743) TCGA-43-2576-01 7 43484756 43484756 C T HECW1 Missense_Mutation p.P662L 0.10 tolerated_low_confidence(0.05) benign(0.15) TCGA-43-2576-01 7 43485064 43485064 G A HECW1 Missense_Mutation p.G765S 0.11 tolerated_low_confidence(0.08) benign(0.055) TCGA-43-2576-01 7 44286744 44286744 A T CAMK2B Missense_Mutation p.M130K 0.24 tolerated_low_confidence(0.29) benign(0.337) TCGA-43-2576-01 7 48314987 48314987 T C ABCA13 Silent p.H1908H 0.09 TCGA-43-2576-01 7 48413957 48413957 C A ABCA13 Missense_Mutation p.T3716K 0.16 probably_damaging(0.986) TCGA-43-2576-01 7 51152899 51152899 T C COBL Missense_Mutation p.T354A 0.09 tolerated(0.18) benign(0.164) TCGA-43-2576-01 7 5569286 5569286 C A ACTB Translation_Start_Site p.M1? 0.11 deleterious_low_confidence(0.04) possibly_damaging(0.48) TCGA-43-2576-01 7 57200001 57200001 G A ZNF479 Nonsense_Mutation p.R11* 0.27 TCGA-43-2576-01 7 57529546 57529546 G T ZNF716 Missense_Mutation p.G460V 0.17 deleterious(0.03) possibly_damaging(0.79) TCGA-43-2576-01 7 71275331 71275331 C G CALN1 Missense_Mutation p.E216D 0.26 tolerated(1) possibly_damaging(0.699) TCGA-43-2576-01 7 72744262 72744262 C T FKBP6 Silent p.P125P 0.11 TCGA-43-2576-01 7 73097986 73097986 G T WBSCR22 Missense_Mutation p.G11C 0.26 tolerated(0.06) benign(0.024) TCGA-43-2576-01 7 80275988 80275988 A T CD36 5'UTR 0.40 TCGA-43-2576-01 7 81381530 81381530 A T HGF Nonsense_Mutation p.C177* 0.32 TCGA-43-2576-01 7 82545208 82545208 C A PCLO Missense_Mutation p.D4032Y 0.43 unknown(0) TCGA-43-2576-01 7 82578791 82578791 C A PCLO Splice_Site p.X3704_splice 0.35 TCGA-43-2576-01 7 82578792 82578792 C A PCLO Silent p.T3704T 0.34 TCGA-43-2576-01 8 10692285 10692285 C G SOX7 Missense_Mutation p.R7P 0.11 tolerated_low_confidence(0.36) benign(0.004) TCGA-43-2576-01 8 113871490 113871490 T A CSMD3 Missense_Mutation p.T547S 0.21 tolerated(0.15) benign(0.184) TCGA-43-2576-01 8 124413007 124413007 G T ATAD2 5'Flank 0.09 TCGA-43-2576-01 8 131955658 131955658 G A ADCY8 Missense_Mutation p.S431F 0.21 deleterious(0) probably_damaging(0.987) TCGA-43-2576-01 8 139165453 139165453 T G FAM135B Missense_Mutation p.N422T 0.25 tolerated(0.07) benign(0.031) TCGA-43-2576-01 8 139207537 139207537 A C FAM135B Silent p.V279V 0.22 TCGA-43-2576-01 8 144458717 144458717 A C RHPN1 Silent p.R67R 0.19 TCGA-43-2576-01 8 22069296 22069296 T A BMP1 3'UTR 0.30 TCGA-43-2576-01 8 24324581 24324581 C A ADAM7 Intron 0.30 TCGA-43-2576-01 8 2836248 2836248 C A CSMD1 Nonsense_Mutation p.E2818* 0.11 TCGA-43-2576-01 8 2886875 2886875 C A CSMD1 Silent p.T2607T 0.29 TCGA-43-2576-01 8 3245161 3245161 A T CSMD1 Silent p.P879P 0.36 TCGA-43-2576-01 8 36664934 36664934 C T KCNU1 Nonsense_Mutation p.Q208* 0.14 TCGA-43-2576-01 8 41550170 41550170 A G ANK1 Missense_Mutation p.I1326T 0.04 tolerated(0.08) benign(0.172) TCGA-43-2576-01 8 59059803 59059803 G C FAM110B Silent p.V338V 0.33 TCGA-43-2576-01 8 69050717 69050717 A T PREX2 Missense_Mutation p.Y1351F 0.25 tolerated(0.46) benign(0.001) TCGA-43-2576-01 8 80523429 80523429 C A STMN2 5'UTR 0.44 TCGA-43-2576-01 8 81733832 81733832 C A ZNF704 5'UTR 0.25 TCGA-43-2576-01 9 100899877 100899877 C G CORO2A Missense_Mutation p.A99P 0.18 deleterious(0) probably_damaging(1) TCGA-43-2576-01 9 104433352 104433352 A T GRIN3A Missense_Mutation p.S448T 0.25 tolerated(0.37) benign(0.064) TCGA-43-2576-01 9 105767982 105767982 C T CYLC2 3'UTR 0.12 TCGA-43-2576-01 9 115626649 115626649 G T SNX30 Missense_Mutation p.M408I 0.25 deleterious(0.03) benign(0.007) TCGA-43-2576-01 9 117062930 117062930 A G COL27A1 Missense_Mutation p.K1555R 0.30 unknown(0) TCGA-43-2576-01 9 134350077 134350077 C T PRRC2B Missense_Mutation p.P854L 0.38 deleterious(0.03) possibly_damaging(0.616) TCGA-43-2576-01 9 18950872 18950872 G T FAM154A Silent p.L34L 0.05 TCGA-43-2576-01 9 23692785 23692785 C A ELAVL2 Missense_Mutation p.A284S 0.20 tolerated(0.63) benign(0.019) TCGA-43-2576-01 9 23692786 23692786 C G ELAVL2 Silent p.L283L 0.19 TCGA-43-2576-01 9 32573158 32573158 G T NDUFB6 5'UTR 0.33 TCGA-43-2576-01 9 34610716 34610716 G A RPP25L 3'UTR 0.04 TCGA-43-2576-01 9 34689985 34689985 G C CCL19 Missense_Mutation p.P73R 0.32 deleterious(0) probably_damaging(1) TCGA-43-2576-01 9 35091572 35091572 G C PIGO Missense_Mutation p.A771G 0.08 tolerated(0.62) benign(0.044) TCGA-43-2576-01 9 35091573 35091573 C T PIGO Missense_Mutation p.A771T 0.08 tolerated(0.7) benign(0.001) TCGA-43-2576-01 9 37304185 37304185 G C ZCCHC7 Missense_Mutation p.A219P 0.38 deleterious(0) probably_damaging(0.999) TCGA-43-2576-01 9 37740937 37740937 G A FRMPD1 Intron 0.25 TCGA-43-2576-01 9 72082781 72082782 - A APBA1 Frame_Shift_Ins p.V481Rfs*28 0.34 TCGA-43-2576-01 9 8319949 8319949 G T PTPRD Missense_Mutation p.T1851N 0.29 deleterious(0) probably_damaging(0.998) TCGA-43-2576-01 9 8331603 8331603 C T PTPRD Missense_Mutation p.G1838E 0.26 deleterious(0) probably_damaging(1) TCGA-43-2576-01 X 100395773 100395773 C G CENPI Intron 0.03 TCGA-43-2576-01 X 10058919 10058919 G T WWC3 Missense_Mutation p.K162N 0.06 deleterious(0) possibly_damaging(0.839) TCGA-43-2576-01 X 101396002 101396002 G C TCEAL6 Missense_Mutation p.P101R 0.21 deleterious(0.01) probably_damaging(0.91) TCGA-43-2576-01 X 101909068 101909068 C A GPRASP1 Missense_Mutation p.P76H 0.12 deleterious(0) possibly_damaging(0.827) TCGA-43-2576-01 X 105199572 105199572 C A NRK Missense_Mutation p.Q1578K 0.17 tolerated_low_confidence(0.08) benign(0.006) TCGA-43-2576-01 X 106184804 106184804 G T MORC4 Missense_Mutation p.L907I 0.35 tolerated(0.06) probably_damaging(0.997) TCGA-43-2576-01 X 107037884 107037884 G T NCBP2L Missense_Mutation p.G145V 0.33 deleterious(0) probably_damaging(0.993) TCGA-43-2576-01 X 109696042 109696042 A T RGAG1 Missense_Mutation p.M733L 0.34 tolerated(0.25) benign(0.012) TCGA-43-2576-01 X 111195531 111195531 C A TRPC5 Missense_Mutation p.V40L 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-43-2576-01 X 115576103 115576103 G C SLC6A14 Missense_Mutation p.R225P 0.23 tolerated(0.25) probably_damaging(0.951) TCGA-43-2576-01 X 119739315 119739315 T C MCTS1 Missense_Mutation p.I23T 0.12 deleterious(0.04) benign(0.026) TCGA-43-2576-01 X 122755356 122755356 G T THOC2 Missense_Mutation p.P1290T 0.14 tolerated(0.14) benign(0.002) TCGA-43-2576-01 X 124097542 124097542 G C TENM1 Missense_Mutation p.L21V 0.10 tolerated_low_confidence(0.5) possibly_damaging(0.677) TCGA-43-2576-01 X 127185625 127185625 G T ACTRT1 Missense_Mutation p.D187E 0.23 deleterious(0.04) probably_damaging(0.918) TCGA-43-2576-01 X 128873147 128873147 C - XPNPEP2 5'UTR 0.16 TCGA-43-2576-01 X 128880289 128880289 G A XPNPEP2 Missense_Mutation p.D126N 0.14 deleterious(0.02) possibly_damaging(0.85) TCGA-43-2576-01 X 128885788 128885788 A G XPNPEP2 Silent p.T269T 0.23 TCGA-43-2576-01 X 128925008 128925008 T A SASH3 Silent p.S131S 0.14 TCGA-43-2576-01 X 129041371 129041371 C T UTP14A Silent p.L19L 0.09 TCGA-43-2576-01 X 132351962 132351962 A G TFDP3 Missense_Mutation p.M109T 0.08 deleterious(0.01) benign(0.045) TCGA-43-2576-01 X 134483083 134483083 G T ZNF449 Missense_Mutation p.A135S 0.11 tolerated(0.4) benign(0.022) TCGA-43-2576-01 X 134714017 134714017 T A DDX26B Silent p.P771P 0.11 TCGA-43-2576-01 X 135428020 135428020 G C GPR112 Missense_Mutation p.A719P 0.17 deleterious(0) benign(0.278) TCGA-43-2576-01 X 135428655 135428655 G T GPR112 Missense_Mutation p.M930I 0.23 tolerated(1) benign(0) TCGA-43-2576-01 X 138686891 138686891 C A MCF2 Silent p.L640L 0.20 TCGA-43-2576-01 X 14027171 14027171 C G GEMIN8 Missense_Mutation p.R197P 0.12 deleterious(0) probably_damaging(0.969) TCGA-43-2576-01 X 140984757 140984757 C T MAGEC3 Nonsense_Mutation p.Q405* 0.28 TCGA-43-2576-01 X 140995529 140995529 G T MAGEC1 Missense_Mutation p.S780I 0.20 deleterious_low_confidence(0.01) benign(0.403) TCGA-43-2576-01 X 142718360 142718360 T A SLITRK4 Nonsense_Mutation p.R189* 0.23 TCGA-43-2576-01 X 147024739 147024739 C A FMR1 Missense_Mutation p.T455K 0.14 tolerated(0.69) benign(0.063) TCGA-43-2576-01 X 147027065 147027065 C A FMR1 Missense_Mutation p.H556N 0.11 tolerated_low_confidence(0.71) benign(0.063) TCGA-43-2576-01 X 148035126 148035126 C AA AFF2 Frame_Shift_Ins p.P472Nfs*24 0.22 TCGA-43-2576-01 X 150349689 150349689 C A GPR50 Missense_Mutation p.P545H 0.18 deleterious_low_confidence(0.02) benign(0.003) TCGA-43-2576-01 X 151093115 151093115 G T MAGEA4 3'UTR 0.06 TCGA-43-2576-01 X 151123336 151123336 A T GABRE Missense_Mutation p.F453Y 0.21 tolerated(0.52) benign(0.227) TCGA-43-2576-01 X 151997092 151997092 C A CETN2 Nonsense_Mutation p.E140* 0.10 TCGA-43-2576-01 X 152482625 152482625 A T MAGEA1 Missense_Mutation p.L129Q 0.10 deleterious(0.01) probably_damaging(0.983) TCGA-43-2576-01 X 152826279 152826279 C A ATP2B3 Missense_Mutation p.N995K 0.20 deleterious(0) probably_damaging(0.992) TCGA-43-2576-01 X 15287930 15287930 T A ASB9 Missense_Mutation p.R23W 0.11 deleterious(0.01) possibly_damaging(0.86) TCGA-43-2576-01 X 153033728 153033728 G T PLXNB3 Missense_Mutation p.G394C 0.17 deleterious(0) probably_damaging(1) TCGA-43-2576-01 X 153416191 153416191 G T OPN1LW Missense_Mutation p.W59L 0.10 tolerated(0.33) benign(0.354) TCGA-43-2576-01 X 153583319 153583319 A C FLNA Missense_Mutation p.D1697E 0.05 tolerated(0.38) benign(0.017) TCGA-43-2576-01 X 153589810 153589810 C G FLNA Missense_Mutation p.G1025R 0.08 tolerated(0.09) possibly_damaging(0.66) TCGA-43-2576-01 X 153626733 153626733 G T RPL10 Intron 0.12 TCGA-43-2576-01 X 153674835 153674835 C A FAM50A Silent p.T123T 0.07 TCGA-43-2576-01 X 153694750 153694750 G T PLXNA3 Missense_Mutation p.R944L 0.23 tolerated(0.16) benign(0.084) TCGA-43-2576-01 X 154159132 154159132 G T F8 Nonsense_Mutation p.S978* 0.11 TCGA-43-2576-01 X 155004373 155004373 C - SPRY3 Frame_Shift_Del p.K282Rfs*37 0.14 TCGA-43-2576-01 X 1719764 1719764 G T AKAP17A Missense_Mutation p.E455D 0.33 deleterious_low_confidence(0.03) unknown(0) TCGA-43-2576-01 X 18593517 18593517 G T CDKL5 Missense_Mutation p.M63I 0.12 deleterious_low_confidence(0.04) benign(0.019) TCGA-43-2576-01 X 18622956 18622956 A G CDKL5 Missense_Mutation p.R638G 0.11 deleterious_low_confidence(0) benign(0.152) TCGA-43-2576-01 X 18912363 18912363 G A PHKA2 Nonsense_Mutation p.Q1166* 0.17 TCGA-43-2576-01 X 18958157 18958157 C T PHKA2 Missense_Mutation p.G292R 0.12 deleterious(0) probably_damaging(0.998) TCGA-43-2576-01 X 22291311 22291311 G T ZNF645 Missense_Mutation p.G68V 0.17 deleterious(0) possibly_damaging(0.878) TCGA-43-2576-01 X 23018165 23018165 C A DDX53 5'UTR 0.15 TCGA-43-2576-01 X 2407256 2407256 T C ZBED1 Missense_Mutation p.K502R 0.17 tolerated(0.3) benign(0.01) TCGA-43-2576-01 X 24721370 24721370 C A POLA1 Silent p.V51V 0.18 TCGA-43-2576-01 X 27839508 27839508 C G MAGEB10 Missense_Mutation p.L29V 0.24 deleterious(0.02) possibly_damaging(0.495) TCGA-43-2576-01 X 30577763 30577763 G A CXorf21 Missense_Mutation p.T237I 0.16 tolerated(0.05) benign(0.167) TCGA-43-2576-01 X 35969450 35969450 C A CXorf22 Missense_Mutation p.Q287K 0.22 deleterious(0.01) possibly_damaging(0.758) TCGA-43-2576-01 X 37026950 37026950 A C FAM47C Missense_Mutation p.E156A 0.10 deleterious(0.01) probably_damaging(0.968) TCGA-43-2576-01 X 37026959 37026959 T C FAM47C Missense_Mutation p.L159P 0.15 deleterious(0) probably_damaging(0.999) TCGA-43-2576-01 X 44101371 44101371 C G EFHC2 Missense_Mutation p.D426H 0.12 tolerated(0.05) possibly_damaging(0.491) TCGA-43-2576-01 X 47101484 47101484 G T USP11 Missense_Mutation p.V438L 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-43-2576-01 X 48682666 48682666 G T HDAC6 Missense_Mutation p.A1181S 0.15 deleterious(0.04) benign(0.395) TCGA-43-2576-01 X 49050779 49050779 C A SYP Silent p.G89G 0.10 TCGA-43-2576-01 X 51487236 51487236 C T GSPT2 Missense_Mutation p.P172S 0.11 tolerated(0.22) benign(0.004) TCGA-43-2576-01 X 53115405 53115405 G A TSPYL2 Missense_Mutation p.E611K 0.09 deleterious_low_confidence(0.05) benign(0.02) TCGA-43-2576-01 X 53578028 53578028 G T HUWE1 Silent p.V3073V 0.06 TCGA-43-2576-01 X 55033014 55033014 C T APEX2 Nonsense_Mutation p.Q235* 0.12 TCGA-43-2576-01 X 57619352 57619352 C A ZXDB Missense_Mutation p.H291N 0.28 deleterious(0) probably_damaging(0.997) TCGA-43-2576-01 X 63410575 63410575 C A AMER1 Missense_Mutation p.W864C 0.20 deleterious(0) probably_damaging(0.99) TCGA-43-2576-01 X 63412639 63412639 G T AMER1 Silent p.I176I 0.14 TCGA-43-2576-01 X 69456938 69456938 G T AWAT1 Missense_Mutation p.M100I 0.13 tolerated(0.92) benign(0.025) TCGA-43-2576-01 X 69478682 69478682 G C P2RY4 Missense_Mutation p.R265G 0.07 deleterious(0) probably_damaging(0.992) TCGA-43-2576-01 X 70148103 70148103 C A SLC7A3 Missense_Mutation p.G238C 0.11 deleterious(0) probably_damaging(0.998) TCGA-43-2576-01 X 70347210 70347210 G A MED12 Silent p.G958G 0.14 TCGA-43-2576-01 X 71359513 71359513 C A NHSL2 Silent p.P705P 0.13 TCGA-43-2576-01 X 73961868 73961868 C A KIAA2022 Nonsense_Mutation p.E842* 0.15 TCGA-43-2576-01 X 77224435 77224435 C T PGAM4 Missense_Mutation p.G234E 0.11 deleterious(0) probably_damaging(0.943) TCGA-43-2576-01 X 77244209 77244209 G T ATP7A Missense_Mutation p.G198C 0.20 deleterious(0) probably_damaging(1) TCGA-43-2576-01 X 78011044 78011044 G T LPAR4 Silent p.V226V 0.17 TCGA-43-2576-01 X 79947356 79947356 C A BRWD3 Silent p.R1149R 0.19 TCGA-43-2576-01 X 83362701 83362701 G A RPS6KA6 Silent p.F347F 0.09 TCGA-43-2576-01 X 83724496 83724496 C A HDX Missense_Mutation p.D79Y 0.12 tolerated(0.07) benign(0.424) TCGA-43-2576-01 X 84363404 84363404 G T SATL1 Missense_Mutation p.P191T 0.08 tolerated(0.3) possibly_damaging(0.803) TCGA-43-2576-01 X 84526311 84526311 A G ZNF711 Missense_Mutation p.K588R 0.17 tolerated(0.14) possibly_damaging(0.482) TCGA-43-2576-01 X 91090535 91090535 C A PCDH11X Missense_Mutation p.A11E 0.16 deleterious(0.03) probably_damaging(0.932) TCGA-43-2576-01 X 9841813 9841813 C A SHROOM2 Missense_Mutation p.S96Y 0.22 deleterious(0) probably_damaging(0.973) TCGA-43-2576-01 X 9905270 9905270 C A SHROOM2 Missense_Mutation p.S1228R 0.14 tolerated(0.11) benign(0.278) TCGA-43-2578-01 10 115412757 115412757 G A NRAP Silent p.S169S 0.19 TCGA-43-2578-01 10 131757215 131757215 G C EBF3 Silent p.T156T 0.13 TCGA-43-2578-01 10 131761760 131761760 G A EBF3 Silent p.F54F 0.66 TCGA-43-2578-01 10 16942801 16942801 C G CUBN Missense_Mutation p.D2745H 0.46 deleterious(0) probably_damaging(0.999) TCGA-43-2578-01 10 35333790 35333790 A C CUL2 Silent p.R190R 0.42 TCGA-43-2578-01 10 37422844 37422844 C A ANKRD30A Nonsense_Mutation p.C150* 0.36 TCGA-43-2578-01 10 48429340 48429340 G C GDF10 Silent p.A182A 0.59 TCGA-43-2578-01 10 48429341 48429341 G T GDF10 Missense_Mutation p.A182D 0.59 deleterious(0.04) probably_damaging(0.988) TCGA-43-2578-01 10 51556783 51556783 A G MSMB Missense_Mutation p.I48V 0.41 tolerated(0.24) benign(0.042) TCGA-43-2578-01 10 55568916 55568916 A T PCDH15 Missense_Mutation p.S566T 0.48 tolerated_low_confidence(0.52) unknown(0) TCGA-43-2578-01 10 7262489 7262489 C A SFMBT2 Missense_Mutation p.S405I 0.49 deleterious(0.02) benign(0.323) TCGA-43-2578-01 10 78713682 78713682 C A KCNMA1 Missense_Mutation p.R729S 0.58 tolerated(0.29) benign(0.143) TCGA-43-2578-01 10 89711893 89711893 C A PTEN Missense_Mutation p.Q171K 0.47 deleterious(0) probably_damaging(0.982) TCGA-43-2578-01 11 103908335 103908335 G T DDI1 Missense_Mutation p.G262V 0.05 deleterious(0) probably_damaging(1) TCGA-43-2578-01 11 106810492 106810492 A T GUCY1A2 Missense_Mutation p.N300K 0.34 tolerated(0.21) benign(0.062) TCGA-43-2578-01 11 118368740 118368740 C A KMT2A Missense_Mutation p.D1918E 0.30 probably_damaging(0.975) TCGA-43-2578-01 11 118403023 118403023 T A TMEM25 Missense_Mutation p.S77T 0.24 tolerated(0.26) possibly_damaging(0.557) TCGA-43-2578-01 11 120176496 120176496 T A POU2F3 Splice_Site p.X259_splice 0.10 TCGA-43-2578-01 11 121023771 121023771 C A TECTA Silent p.S1429S 0.39 TCGA-43-2578-01 11 123777196 123777196 C G OR8D4 Missense_Mutation p.Q20E 0.29 tolerated(0.09) benign(0.008) TCGA-43-2578-01 11 130284617 130284617 C A ADAMTS8 Missense_Mutation p.D459Y 0.39 deleterious(0.01) benign(0.207) TCGA-43-2578-01 11 133791226 133791226 G A IGSF9B Silent p.D798D 0.43 TCGA-43-2578-01 11 17408451 17408451 C A KCNJ11 3'UTR 0.54 TCGA-43-2578-01 11 2190926 2190926 C A TH Missense_Mutation p.R120M 0.28 deleterious(0.01) possibly_damaging(0.566) TCGA-43-2578-01 11 22257761 22257761 G A ANO5 Missense_Mutation p.R234K 0.23 tolerated(1) benign(0.002) TCGA-43-2578-01 11 3659814 3659814 C A ART5 3'UTR 0.53 TCGA-43-2578-01 11 44072153 44072153 G A ACCSL Missense_Mutation p.D206N 0.27 tolerated(0.08) benign(0.198) TCGA-43-2578-01 11 4903764 4903764 A T OR51T1 Missense_Mutation p.D239V 0.45 deleterious(0) probably_damaging(0.999) TCGA-43-2578-01 11 55322725 55322725 C G OR4C15 Missense_Mutation p.P315A 0.22 tolerated_low_confidence(0.4) possibly_damaging(0.65) TCGA-43-2578-01 11 55563693 55563693 T A OR5D14 Missense_Mutation p.V221D 0.34 deleterious(0) possibly_damaging(0.675) TCGA-43-2578-01 11 55927656 55927656 G A OR8K5 Silent p.I46I 0.31 TCGA-43-2578-01 11 56468292 56468292 G A OR9G1 Silent p.L143L 0.10 TCGA-43-2578-01 11 58294964 58294964 T C LPXN Missense_Mutation p.Y380C 0.29 deleterious(0) probably_damaging(1) TCGA-43-2578-01 11 58723225 58723225 G T GLYATL1 Missense_Mutation p.G243C 0.23 deleterious(0) probably_damaging(0.999) TCGA-43-2578-01 11 5968758 5968758 A T OR56A3 Missense_Mutation p.Q61L 0.39 deleterious(0) benign(0.174) TCGA-43-2578-01 11 59837686 59837686 T A MS4A3 Missense_Mutation p.S209T 0.26 tolerated(0.13) benign(0.042) TCGA-43-2578-01 11 61539172 61539172 T A MYRF Missense_Mutation p.I314N 0.29 tolerated(0.22) possibly_damaging(0.883) TCGA-43-2578-01 11 62342867 62342867 C T TUT1 Nonsense_Mutation p.W813* 0.31 TCGA-43-2578-01 11 62760671 62760671 C T SLC22A8 3'UTR 0.18 TCGA-43-2578-01 11 64677243 64677243 G C ATG2A Missense_Mutation p.L673V 0.35 tolerated(0.08) benign(0.161) TCGA-43-2578-01 11 64679608 64679608 G T ATG2A Missense_Mutation p.P346T 0.33 tolerated(0.56) benign(0.066) TCGA-43-2578-01 11 65767582 65767582 C T EIF1AD Silent p.G46G 0.36 TCGA-43-2578-01 11 71155063 71155063 G C DHCR7 Silent p.L99L 0.21 TCGA-43-2578-01 11 72554711 72554711 G C FCHSD2 Intron 0.15 TCGA-43-2578-01 11 75430961 75430961 C A MOGAT2 Intron 0.36 TCGA-43-2578-01 11 75431154 75431154 A T MOGAT2 Missense_Mutation p.H70L 0.31 deleterious(0.03) benign(0.016) TCGA-43-2578-01 11 88033701 88033701 G C CTSC Missense_Mutation p.Q252E 0.27 deleterious(0) probably_damaging(0.966) TCGA-43-2578-01 11 95825700 95825700 C A MAML2 Missense_Mutation p.G499W 0.23 probably_damaging(0.986) TCGA-43-2578-01 12 101873438 101873438 C G SPIC Missense_Mutation p.T59R 0.27 tolerated(0.22) benign(0.265) TCGA-43-2578-01 12 11174518 11174518 T C TAS2R19 Missense_Mutation p.D218G 0.27 deleterious(0.01) possibly_damaging(0.833) TCGA-43-2578-01 12 114836513 114836513 G A TBX5 Silent p.G125G 0.42 TCGA-43-2578-01 12 120972765 120972765 A C RNF10 Missense_Mutation p.K51Q 0.36 deleterious(0.02) benign(0.059) TCGA-43-2578-01 12 121206828 121206828 G A SPPL3 Silent p.A179A 0.31 TCGA-43-2578-01 12 124968189 124968189 G A NCOR2 Missense_Mutation p.P122S 0.20 unknown(0) TCGA-43-2578-01 12 125509609 125509609 G C BRI3BP Missense_Mutation p.G130A 0.38 tolerated(0.25) probably_damaging(0.973) TCGA-43-2578-01 12 130840201 130840201 G T PIWIL1 Missense_Mutation p.G465C 0.21 deleterious(0.01) possibly_damaging(0.717) TCGA-43-2578-01 12 2659754 2659754 G T CACNA1C Intron 0.34 TCGA-43-2578-01 12 38714293 38714293 C A ALG10B Missense_Mutation p.L234I 0.37 tolerated(0.1) benign(0.019) TCGA-43-2578-01 12 39756986 39756986 C A KIF21A Missense_Mutation p.L311F 0.25 deleterious(0) probably_damaging(0.98) TCGA-43-2578-01 12 42706889 42706889 C T ZCRB1 Missense_Mutation p.E212K 0.12 deleterious(0) possibly_damaging(0.788) TCGA-43-2578-01 12 49433700 49433714 GGTGGCAGAACCGAC - KMT2D In_Frame_Del p.S2614_P2618del 0.35 TCGA-43-2578-01 12 53565313 53565313 C A CSAD Intron 0.26 TCGA-43-2578-01 12 56398187 56398187 G C SUOX Silent p.R338R 0.19 TCGA-43-2578-01 12 6933072 6933072 G A GPR162 Missense_Mutation p.R3Q 0.45 deleterious_low_confidence(0.03) benign(0.238) TCGA-43-2578-01 12 70003884 70003884 T C LRRC10 Silent p.P245P 0.11 TCGA-43-2578-01 12 70048965 70048965 T A BEST3 Missense_Mutation p.N577Y 0.33 deleterious_low_confidence(0.04) benign(0.027) TCGA-43-2578-01 12 7459250 7459250 C T ACSM4 Missense_Mutation p.P108L 0.14 tolerated(0.06) benign(0.039) TCGA-43-2578-01 13 113798324 113798324 A G F10 Missense_Mutation p.N221S 0.40 tolerated(0.25) benign(0.293) TCGA-43-2578-01 13 21549176 21549176 C A LATS2 Nonsense_Mutation p.E1034* 0.46 TCGA-43-2578-01 13 22140935 22140935 C G MICU2 Splice_Site p.X120_splice 0.30 TCGA-43-2578-01 13 40263924 40263924 T A COG6 Missense_Mutation p.V346D 0.43 deleterious(0) probably_damaging(0.914) TCGA-43-2578-01 13 49030426 49030426 C G RB1 Nonsense_Mutation p.S634* 0.43 TCGA-43-2578-01 13 99907119 99907119 G A GPR18 3'UTR 0.50 TCGA-43-2578-01 14 103412890 103412890 C A CDC42BPB Silent p.L1221L 0.12 TCGA-43-2578-01 14 105419898 105419907 CTCTGTGCGT - AHNAK2 Frame_Shift_Del p.R628Kfs*3 0.29 TCGA-43-2578-01 14 105518399 105518399 G T GPR132 Silent p.S25S 0.48 TCGA-43-2578-01 14 106963323 106963323 G C IGHV1-45 Missense_Mutation p.T15R 0.10 deleterious(0.03) possibly_damaging(0.82) TCGA-43-2578-01 14 107131289 107131289 A C IGHV3-66 Missense_Mutation p.I31S 0.62 deleterious_low_confidence(0.01) benign(0.048) TCGA-43-2578-01 14 20215938 20215938 G T OR4Q3 Missense_Mutation p.V118F 0.55 deleterious(0.01) benign(0.232) TCGA-43-2578-01 14 20854308 20854308 C A TEP1 Missense_Mutation p.V970L 0.48 tolerated(0.11) benign(0.255) TCGA-43-2578-01 14 22409336 22409336 G C TRAV9-2 5'UTR 0.64 TCGA-43-2578-01 14 23873974 23873974 G T MYH6 Silent p.A196A 0.60 TCGA-43-2578-01 14 29238041 29238041 T A FOXG1 3'UTR 0.60 TCGA-43-2578-01 14 72985064 72985064 G T RGS6 Missense_Mutation p.W366L 0.43 deleterious(0) probably_damaging(0.981) TCGA-43-2578-01 14 74413274 74413274 G T FAM161B Missense_Mutation p.A93E 0.53 tolerated(0.27) benign(0.234) TCGA-43-2578-01 14 74825298 74825298 C T VRTN Silent p.S604S 0.63 TCGA-43-2578-01 14 89878560 89878560 G T FOXN3 Silent p.V87V 0.34 TCGA-43-2578-01 14 92900300 92900300 C T SLC24A4 Nonsense_Mutation p.Q96* 0.09 TCGA-43-2578-01 14 99183497 99183497 T A C14orf177 Silent p.S88S 0.54 TCGA-43-2578-01 15 22999410 22999410 G C CYFIP1 Missense_Mutation p.E1094D 0.06 deleterious(0.04) probably_damaging(0.951) TCGA-43-2578-01 15 23811738 23811738 G T MKRN3 Missense_Mutation p.G270V 0.44 deleterious(0) probably_damaging(0.997) TCGA-43-2578-01 15 40702942 40702942 C T IVD Silent p.I137I 0.55 TCGA-43-2578-01 15 51984508 51984508 T C SCG3 Silent p.Y281Y 0.46 TCGA-43-2578-01 15 66223281 66223281 C T MEGF11 Missense_Mutation p.G430R 0.45 deleterious(0) probably_damaging(0.972) TCGA-43-2578-01 16 14947401 14947401 G T NOMO1 Silent p.T271T 0.24 TCGA-43-2578-01 16 16170234 16170234 G T ABCC1 Missense_Mutation p.R655M 0.25 tolerated(0.06) benign(0.407) TCGA-43-2578-01 16 20702439 20702439 A T ACSM1 Silent p.P24P 0.28 TCGA-43-2578-01 16 21030989 21030989 G T DNAH3 Silent p.P1993P 0.27 TCGA-43-2578-01 16 23999892 23999892 A T PRKCB Missense_Mutation p.D90V 0.32 tolerated(0.07) benign(0.139) TCGA-43-2578-01 16 32890604 32890604 C A SLC6A10P RNA 0.15 TCGA-43-2578-01 16 47117149 47117149 T A NETO2 Missense_Mutation p.I521L 0.48 tolerated_low_confidence(1) benign(0) TCGA-43-2578-01 16 49672234 49672234 C T ZNF423 Missense_Mutation p.E277K 0.46 deleterious(0.03) benign(0.142) TCGA-43-2578-01 16 51172639 51172639 G T SALL1 Missense_Mutation p.T1165N 0.47 tolerated(0.06) benign(0.026) TCGA-43-2578-01 16 64982593 64982593 G C CDH11 Intron 0.50 TCGA-43-2578-01 16 67700143 67700143 C T ENKD1 Silent p.A37A 0.07 TCGA-43-2578-01 16 825561 825561 C A MSLNL Missense_Mutation p.R400S 0.38 benign(0.001) TCGA-43-2578-01 17 10411234 10411234 G A MYH1 Missense_Mutation p.S646F 0.37 deleterious(0.01) possibly_damaging(0.536) TCGA-43-2578-01 17 27282922 27282922 G T SEZ6 3'UTR 0.57 TCGA-43-2578-01 17 32964687 32964687 G T TMEM132E Silent p.L797L 0.31 TCGA-43-2578-01 17 40260052 40260052 C A DHX58 Silent p.R251R 0.44 TCGA-43-2578-01 17 41362019 41362019 A T NBR1 Missense_Mutation p.N943Y 0.38 deleterious(0) probably_damaging(0.996) TCGA-43-2578-01 17 47788602 47788602 G C FAM117A 3'UTR 0.62 TCGA-43-2578-01 17 57275130 57275130 G T CTD-2510F5.6 Missense_Mutation p.A39S 0.57 deleterious_low_confidence(0) benign(0.001) TCGA-43-2578-01 17 61972329 61972329 C T CSH1 3'UTR 0.61 TCGA-43-2578-01 17 6927751 6927751 C T BCL6B Silent p.L145L 0.29 TCGA-43-2578-01 18 19996472 19996472 C A CTAGE1 Missense_Mutation p.A435S 0.20 tolerated(0.13) possibly_damaging(0.721) TCGA-43-2578-01 18 19996473 19996473 C A CTAGE1 Silent p.S434S 0.20 TCGA-43-2578-01 18 29175121 29175121 C T TTR Missense_Mutation p.T80I 0.25 deleterious(0.01) probably_damaging(0.985) TCGA-43-2578-01 18 29453429 29453429 G A TRAPPC8 Missense_Mutation p.R676W 0.26 deleterious(0) probably_damaging(0.998) TCGA-43-2578-01 18 3067412 3067412 C T MYOM1 Missense_Mutation p.V1636M 0.14 deleterious(0) probably_damaging(0.999) TCGA-43-2578-01 18 31263479 31263479 C A ASXL3 Missense_Mutation p.P276T 0.31 probably_damaging(1) TCGA-43-2578-01 18 5416379 5416379 T A EPB41L3 Splice_Site p.X503_splice 0.30 TCGA-43-2578-01 18 6993639 6993639 C T LAMA1 Splice_Site p.X1670_splice 0.34 TCGA-43-2578-01 18 9887052 9887052 G C TXNDC2 Missense_Mutation p.E192D 0.07 tolerated(0.52) benign(0.108) TCGA-43-2578-01 19 10610211 10610211 C A KEAP1 Missense_Mutation p.V167F 0.41 deleterious(0) probably_damaging(1) TCGA-43-2578-01 19 11510615 11510615 C T RGL3 Silent p.G560G 0.45 TCGA-43-2578-01 19 11624938 11624938 G C ECSIT Silent p.P65P 0.45 TCGA-43-2578-01 19 12243921 12243921 T C ZNF20 Silent p.T360T 0.45 TCGA-43-2578-01 19 12297702 12297702 G T ZNF136 Missense_Mutation p.C170F 0.45 deleterious(0) probably_damaging(1) TCGA-43-2578-01 19 13397745 13397745 G T CACNA1A Missense_Mutation p.P1042H 0.45 probably_damaging(0.979) TCGA-43-2578-01 19 15052439 15052439 C A OR7C2 Missense_Mutation p.L47M 0.48 deleterious_low_confidence(0.03) probably_damaging(0.98) TCGA-43-2578-01 19 21476912 21476912 C A ZNF708 Missense_Mutation p.G286C 0.33 deleterious(0.02) possibly_damaging(0.697) TCGA-43-2578-01 19 24309708 24309708 A G ZNF254 Silent p.A302A 0.55 TCGA-43-2578-01 19 33349399 33349399 A G SLC7A9 Silent p.F308F 0.33 TCGA-43-2578-01 19 33600724 33600724 A T GPATCH1 Missense_Mutation p.R463W 0.26 deleterious(0) possibly_damaging(0.571) TCGA-43-2578-01 19 36122095 36122095 C T RBM42 Silent p.P112P 0.37 TCGA-43-2578-01 19 3789339 3789339 C A MATK Nonsense_Mutation p.G3* 0.29 TCGA-43-2578-01 19 3819124 3819124 G A ZFR2 Missense_Mutation p.A617V 0.36 tolerated(0.08) benign(0.007) TCGA-43-2578-01 19 38885282 38885282 G T SPRED3 Splice_Site p.X142_splice 0.47 TCGA-43-2578-01 19 425217 425217 C A SHC2 Missense_Mutation p.G397C 0.57 deleterious(0.02) probably_damaging(0.999) TCGA-43-2578-01 19 42583881 42583881 A G ZNF574 Missense_Mutation p.T375A 0.08 deleterious(0.01) possibly_damaging(0.874) TCGA-43-2578-01 19 43441184 43441184 C G PSG7 Missense_Mutation p.W15C 0.20 deleterious(0.03) possibly_damaging(0.601) TCGA-43-2578-01 19 46328429 46328429 C A SYMPK Silent p.P830P 0.15 TCGA-43-2578-01 19 46973039 46973039 A C PNMAL1 Silent p.S418S 0.47 TCGA-43-2578-01 19 46998649 46998649 C A PNMAL2 Missense_Mutation p.G25V 0.19 deleterious(0) probably_damaging(0.999) TCGA-43-2578-01 19 47575963 47575963 G A ZC3H4 Missense_Mutation p.A483V 0.06 unknown(0) TCGA-43-2578-01 19 51298356 51298356 G A ACPT Missense_Mutation p.G408R 0.29 deleterious(0.05) possibly_damaging(0.904) TCGA-43-2578-01 19 51410182 51410182 C - KLK4 3'UTR 0.20 TCGA-43-2578-01 19 53303427 53303427 C T ZNF28 Silent p.E557E 0.37 TCGA-43-2578-01 19 53303938 53303938 T A ZNF28 Missense_Mutation p.E387V 0.35 tolerated(0.12) probably_damaging(0.941) TCGA-43-2578-01 19 54242613 54242613 A T MIR518A2 RNA 0.58 TCGA-43-2578-01 19 54260071 54260071 G C MIR516A1 RNA 0.55 TCGA-43-2578-01 19 54313716 54313716 G T NLRP12 Silent p.T399T 0.35 TCGA-43-2578-01 19 56701832 56701832 G T ZSCAN5B Missense_Mutation p.S284R 0.21 tolerated(0.35) probably_damaging(0.999) TCGA-43-2578-01 19 57175947 57175947 G A ZNF835 Missense_Mutation p.T207M 0.35 deleterious(0.01) benign(0.11) TCGA-43-2578-01 19 5788169 5788169 G C DUS3L Missense_Mutation p.R321G 0.40 deleterious(0) probably_damaging(1) TCGA-43-2578-01 19 58867836 58867836 G A ZNF497 Missense_Mutation p.A389V 0.27 tolerated(0.21) benign(0.105) TCGA-43-2578-01 19 9075135 9075135 G C MUC16 Nonsense_Mutation p.S4104* 0.42 TCGA-43-2578-01 1 151262644 151262644 C T ZNF687 Missense_Mutation p.S1004F 0.40 deleterious(0) probably_damaging(0.993) TCGA-43-2578-01 1 152659545 152659545 C T LCE2B Missense_Mutation p.H76Y 0.13 deleterious_low_confidence(0.01) unknown(0) TCGA-43-2578-01 1 156521502 156521502 C A IQGAP3 Missense_Mutation p.A577S 0.51 tolerated(0.13) benign(0.25) TCGA-43-2578-01 1 1599852 1599852 C A SLC35E2B Silent p.L298L 0.23 TCGA-43-2578-01 1 160719865 160719865 G T SLAMF7 Missense_Mutation p.A211S 0.46 tolerated(0.22) benign(0.23) TCGA-43-2578-01 1 160990843 160990843 G C F11R Silent p.V7V 0.36 TCGA-43-2578-01 1 161022516 161022516 G T ARHGAP30 Missense_Mutation p.P246T 0.37 deleterious(0.04) benign(0.231) TCGA-43-2578-01 1 161070430 161070430 G A PFDN2 3'UTR 0.41 TCGA-43-2578-01 1 161488732 161488732 T G FCGR2A 3'UTR 0.09 TCGA-43-2578-01 1 1666215 1666215 C A SLC35E2 Missense_Mutation p.A216S 0.17 tolerated_low_confidence(0.05) benign(0.003) TCGA-43-2578-01 1 16748415 16748415 G C SPATA21 Missense_Mutation p.A29G 0.34 deleterious(0.02) benign(0.009) TCGA-43-2578-01 1 16902793 16902793 C A NBPF1 Silent p.L696L 0.03 TCGA-43-2578-01 1 176905450 176905450 G A ASTN1 Missense_Mutation p.R812W 0.10 deleterious(0) possibly_damaging(0.701) TCGA-43-2578-01 1 200880605 200880605 T G C1orf106 Silent p.P328P 0.19 TCGA-43-2578-01 1 201983144 201983144 G A ELF3 Silent p.R331R 0.29 TCGA-43-2578-01 1 203317314 203317314 G A FMOD Missense_Mutation p.H29Y 0.58 tolerated(1) benign(0) TCGA-43-2578-01 1 22165442 22165442 C T HSPG2 Silent p.R3342R 0.36 TCGA-43-2578-01 1 222802777 222802777 G T MIA3 Missense_Mutation p.A739S 0.59 deleterious(0) probably_damaging(0.998) TCGA-43-2578-01 1 224475681 224475681 C T NVL Silent p.R530R 0.56 TCGA-43-2578-01 1 229619809 229619809 T A NUP133 Missense_Mutation p.Q528H 0.64 tolerated(0.4) benign(0) TCGA-43-2578-01 1 241901755 241901755 A C WDR64 Missense_Mutation p.M419L 0.59 deleterious(0.01) probably_damaging(0.989) TCGA-43-2578-01 1 242159509 242159509 T A MAP1LC3C Missense_Mutation p.R134W 0.60 deleterious(0.03) benign(0) TCGA-43-2578-01 1 248436938 248436938 A G OR2T33 Missense_Mutation p.L60P 0.50 deleterious(0) probably_damaging(0.992) TCGA-43-2578-01 1 31206716 31206716 G T LAPTM5 Missense_Mutation p.P250T 0.18 deleterious_low_confidence(0.01) probably_damaging(0.92) TCGA-43-2578-01 1 32669966 32669966 C T CCDC28B Nonsense_Mutation p.Q171* 0.44 TCGA-43-2578-01 1 33745931 33745931 G T ZNF362 Missense_Mutation p.G186C 0.21 tolerated(0.13) probably_damaging(0.984) TCGA-43-2578-01 1 34663142 34663142 G T C1orf94 Missense_Mutation p.A213S 0.18 tolerated(0.49) benign(0.128) TCGA-43-2578-01 1 35226920 35226920 G T GJB4 Missense_Mutation p.R22L 0.40 deleterious(0) probably_damaging(0.998) TCGA-43-2578-01 1 43775071 43775071 A T TIE1 Missense_Mutation p.I401F 0.17 tolerated(0.2) probably_damaging(0.998) TCGA-43-2578-01 1 47016743 47016743 C A KNCN Missense_Mutation p.V49F 0.36 tolerated_low_confidence(0.41) benign(0.006) TCGA-43-2578-01 1 51912683 51912683 C A EPS15 Missense_Mutation p.R249L 0.28 deleterious(0.01) probably_damaging(0.995) TCGA-43-2578-01 1 55563371 55563371 G C USP24 Missense_Mutation p.T1872S 0.25 tolerated(0.29) benign(0.038) TCGA-43-2578-01 1 5964865 5964865 C A NPHP4 Splice_Site p.X652_splice 0.35 TCGA-43-2578-01 1 6272764 6272764 G C RNF207 Missense_Mutation p.R502P 0.23 deleterious(0.01) benign(0.345) TCGA-43-2578-01 1 67147845 67147845 G T SGIP1 Missense_Mutation p.V370L 0.19 tolerated_low_confidence(0.45) benign(0.001) TCGA-43-2578-01 1 75622600 75622600 C G LHX8 Missense_Mutation p.A278G 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-43-2578-01 1 78097596 78097596 C A ZZZ3 Missense_Mutation p.D482Y 0.41 deleterious(0.03) possibly_damaging(0.702) TCGA-43-2578-01 1 89730408 89730408 A T GBP5 Silent p.S370S 0.33 TCGA-43-2578-01 1 92528829 92528829 A G EPHX4 Missense_Mutation p.R359G 0.47 tolerated(0.16) benign(0.002) TCGA-43-2578-01 1 94463498 94463498 C T ABCA4 Silent p.A2216A 0.39 TCGA-43-2578-01 20 1456741 1456741 G A SIRPB2 3'UTR 0.54 TCGA-43-2578-01 20 18433327 18433327 C A DZANK1 Splice_Site p.X159_splice 0.32 TCGA-43-2578-01 20 20232401 20232401 G C C20orf26 Missense_Mutation p.Q774H 0.30 deleterious(0) probably_damaging(0.998) TCGA-43-2578-01 20 33874542 33874542 C A FAM83C Silent p.L680L 0.21 TCGA-43-2578-01 20 43850949 43850949 G A SEMG2 Missense_Mutation p.V226M 0.29 tolerated(0.35) benign(0.328) TCGA-43-2578-01 20 44048147 44048147 G T PIGT Missense_Mutation p.G200C 0.33 deleterious(0) probably_damaging(1) TCGA-43-2578-01 20 44180615 44180615 C G WFDC8 Intron 0.28 TCGA-43-2578-01 20 44639932 44639932 G C MMP9 Missense_Mutation p.R267P 0.31 deleterious(0.01) benign(0.204) TCGA-43-2578-01 20 47886894 47886894 G A ZNFX1 Silent p.C485C 0.06 TCGA-43-2578-01 20 50273654 50273654 C A ATP9A Silent p.T443T 0.23 TCGA-43-2578-01 20 51871519 51871519 G C TSHZ2 Missense_Mutation p.D508H 0.26 deleterious(0) probably_damaging(0.999) TCGA-43-2578-01 20 55027698 55027698 C A CASS4 Missense_Mutation p.S489Y 0.47 deleterious(0) probably_damaging(0.994) TCGA-43-2578-01 20 55033731 55033731 G T CASS4 Silent p.A763A 0.16 TCGA-43-2578-01 20 57767515 57767515 C A ZNF831 Silent p.R481R 0.20 TCGA-43-2578-01 20 61867797 61867797 G T BIRC7 Missense_Mutation p.G117C 0.36 deleterious(0) possibly_damaging(0.466) TCGA-43-2578-01 20 62839118 62839118 C A MYT1 Missense_Mutation p.P190Q 0.54 benign(0.006) TCGA-43-2578-01 20 7963243 7963243 A T TMX4 Silent p.A235A 0.33 TCGA-43-2578-01 21 11039130 11039130 G T BAGE2 RNA 0.06 TCGA-43-2578-01 21 31709843 31709843 G T KRTAP27-1 Missense_Mutation p.D48E 0.09 deleterious(0.03) possibly_damaging(0.517) TCGA-43-2578-01 21 36421302 36421302 C G RUNX1 5'UTR 0.22 TCGA-43-2578-01 21 38460573 38460573 A G TTC3 Missense_Mutation p.I89V 0.04 tolerated(0.14) benign(0.02) TCGA-43-2578-01 21 42647528 42647528 C T BACE2 Silent p.L512L 0.32 TCGA-43-2578-01 21 46078016 46078016 C A KRTAP12-3 Nonsense_Mutation p.C40* 0.59 TCGA-43-2578-01 22 21347115 21347115 T C LZTR1 Silent p.A394A 0.50 TCGA-43-2578-01 22 21347116 21347116 G T LZTR1 Missense_Mutation p.V395F 0.50 deleterious(0) possibly_damaging(0.905) TCGA-43-2578-01 22 32302363 32302363 G T DEPDC5 Silent p.G1555G 0.47 TCGA-43-2578-01 22 33700389 33700389 C A LARGE Missense_Mutation p.G519V 0.46 tolerated(0.16) possibly_damaging(0.876) TCGA-43-2578-01 22 38119338 38119338 G A TRIOBP Missense_Mutation p.A259T 0.09 tolerated_low_confidence(0.15) benign(0.007) TCGA-43-2578-01 22 39996543 39996543 T G CACNA1I Missense_Mutation p.F123V 0.51 deleterious(0) probably_damaging(0.987) TCGA-43-2578-01 2 103324932 103324932 G T SLC9A2 Missense_Mutation p.G808V 0.26 deleterious_low_confidence(0.03) probably_damaging(0.919) TCGA-43-2578-01 2 106498213 106498213 G T NCK2 Missense_Mutation p.G219V 0.31 deleterious(0) probably_damaging(1) TCGA-43-2578-01 2 120702715 120702715 A G PTPN4 Missense_Mutation p.K472E 0.33 tolerated(0.85) benign(0.185) TCGA-43-2578-01 2 136620287 136620287 C A MCM6 Silent p.L370L 0.37 TCGA-43-2578-01 2 155711340 155711340 G T KCNJ3 Missense_Mutation p.D341Y 0.18 deleterious(0) probably_damaging(1) TCGA-43-2578-01 2 158140834 158140834 A T GALNT5 Missense_Mutation p.S499C 0.15 deleterious(0) probably_damaging(0.998) TCGA-43-2578-01 2 163031394 163031394 G T FAP Missense_Mutation p.S651Y 0.22 deleterious(0) probably_damaging(1) TCGA-43-2578-01 2 166451624 166451624 C A CSRNP3 Missense_Mutation p.P17T 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-43-2578-01 2 179434250 179434250 G A TTN Missense_Mutation p.R25537C 0.10 TCGA-43-2578-01 2 183623609 183623609 G T DNAJC10 Missense_Mutation p.W663C 0.17 deleterious(0) probably_damaging(0.999) TCGA-43-2578-01 2 189876652 189876652 G A COL3A1 3'UTR 0.19 TCGA-43-2578-01 2 204255841 204255841 C T ABI2 Missense_Mutation p.P179S 0.29 deleterious(0.04) possibly_damaging(0.788) TCGA-43-2578-01 2 222428482 222428482 A T EPHA4 Silent p.A264A 0.31 TCGA-43-2578-01 2 225670849 225670849 T G DOCK10 Missense_Mutation p.I1270L 0.15 tolerated(0.12) probably_damaging(0.982) TCGA-43-2578-01 2 233273070 233273070 G T ALPPL2 Missense_Mutation p.D248Y 0.09 deleterious(0) probably_damaging(0.995) TCGA-43-2578-01 2 234202983 234202983 G - ATG16L1 Frame_Shift_Del p.A605Hfs*31 0.18 TCGA-43-2578-01 2 234601653 234601653 G T UGT1A6 Translation_Start_Site p.M1? 0.23 deleterious_low_confidence(0.02) probably_damaging(0.958) TCGA-43-2578-01 2 241420378 241420378 C A ANKMY1 Missense_Mutation p.D919Y 0.31 deleterious(0) probably_damaging(0.995) TCGA-43-2578-01 2 27730846 27730846 A C GCKR Missense_Mutation p.N415H 0.42 tolerated(0.28) possibly_damaging(0.804) TCGA-43-2578-01 2 37041330 37041330 G C VIT Silent p.V636V 0.18 TCGA-43-2578-01 2 44023055 44023055 G T DYNC2LI1 Silent p.P178P 0.43 TCGA-43-2578-01 2 44051508 44051508 T A ABCG5 Missense_Mutation p.Q323L 0.47 deleterious(0.02) benign(0.254) TCGA-43-2578-01 2 74750078 74750078 G T DQX1 Missense_Mutation p.P403H 0.24 deleterious(0) possibly_damaging(0.905) TCGA-43-2578-01 2 85823972 85823972 A T RNF181 Missense_Mutation p.E82V 0.34 deleterious(0) benign(0.259) TCGA-43-2578-01 2 88082413 88082413 A G RGPD2 Missense_Mutation p.L1377S 0.22 deleterious(0.02) probably_damaging(0.992) TCGA-43-2578-01 2 89340148 89340148 C A IGKV1-12 Missense_Mutation p.W16C 0.21 tolerated(0.1) benign(0.002) TCGA-43-2578-01 2 99614543 99614543 A G TSGA10 3'UTR 0.41 TCGA-43-2578-01 3 102196518 102196518 T C ZPLD1 3'UTR 0.28 TCGA-43-2578-01 3 107097435 107097435 T C CCDC54 3'UTR 0.21 TCGA-43-2578-01 3 111664201 111664201 A G PHLDB2 Silent p.K828K 0.42 TCGA-43-2578-01 3 121822396 121822396 G T CD86 Missense_Mutation p.E34D 0.23 tolerated(0.15) benign(0.021) TCGA-43-2578-01 3 129267964 129267964 C G H1FOO Missense_Mutation p.P167A 0.55 tolerated(0.13) benign(0.376) TCGA-43-2578-01 3 130282165 130282165 G T COL6A6 Missense_Mutation p.Q106H 0.21 deleterious(0.03) possibly_damaging(0.447) TCGA-43-2578-01 3 136136806 136136806 T C STAG1 Missense_Mutation p.D706G 0.08 deleterious(0) probably_damaging(0.971) TCGA-43-2578-01 3 137843132 137843132 C T A4GNT Missense_Mutation p.G333R 0.16 tolerated_low_confidence(0.83) benign(0.002) TCGA-43-2578-01 3 139297773 139297773 G T NMNAT3 Silent p.I41I 0.19 TCGA-43-2578-01 3 14509682 14509682 A G SLC6A6 Missense_Mutation p.Q353R 0.23 tolerated(0.21) benign(0.392) TCGA-43-2578-01 3 156254576 156254576 C A KCNAB1 3'UTR 0.24 TCGA-43-2578-01 3 157160709 157160709 A T PTX3 Missense_Mutation p.I363F 0.24 deleterious(0) possibly_damaging(0.812) TCGA-43-2578-01 3 164908179 164908179 C A SLITRK3 Missense_Mutation p.G147V 0.20 deleterious(0.01) probably_damaging(1) TCGA-43-2578-01 3 172166131 172166131 G A GHSR Missense_Mutation p.P25S 0.17 tolerated(0.39) benign(0) TCGA-43-2578-01 3 173993318 173993318 G T NLGN1 Splice_Site p.X287_splice 0.43 TCGA-43-2578-01 3 173998420 173998420 C A NLGN1 Missense_Mutation p.A600D 0.14 deleterious(0) probably_damaging(0.998) TCGA-43-2578-01 3 173998935 173998935 G T NLGN1 Missense_Mutation p.D772Y 0.30 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-43-2578-01 3 184297702 184297702 G T EPHB3 Missense_Mutation p.A718S 0.26 tolerated(1) benign(0.309) TCGA-43-2578-01 3 192516749 192516749 C T MB21D2 Missense_Mutation p.C301Y 0.22 tolerated(0.29) possibly_damaging(0.702) TCGA-43-2578-01 3 193372726 193372726 G T OPA1 Silent p.A678A 0.14 TCGA-43-2578-01 3 19436596 19436596 G T KCNH8 Missense_Mutation p.V324L 0.32 tolerated(0.29) possibly_damaging(0.872) TCGA-43-2578-01 3 194373764 194373764 C G LSG1 Missense_Mutation p.R289S 0.13 tolerated(0.69) benign(0.001) TCGA-43-2578-01 3 195481244 195481244 C A MUC4 Splice_Site p.X5057_splice 0.15 TCGA-43-2578-01 3 196753577 196753581 TCCCG - MFI2 Frame_Shift_Del p.A85Efs*36 0.35 TCGA-43-2578-01 3 197640840 197640840 C A IQCG Missense_Mutation p.R267L 0.28 tolerated(0.7) benign(0.016) TCGA-43-2578-01 3 20136868 20136868 G T KAT2B Missense_Mutation p.D182Y 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-43-2578-01 3 37070325 37070325 G T MLH1 Missense_Mutation p.R487L 0.48 tolerated(0.21) benign(0.002) TCGA-43-2578-01 3 38087137 38087137 G T DLEC1 Missense_Mutation p.S172I 0.27 deleterious(0.03) benign(0.187) TCGA-43-2578-01 3 38798291 38798291 C A SCN10A Silent p.L388L 0.43 TCGA-43-2578-01 3 38805035 38805035 T A SCN10A Nonsense_Mutation p.R218* 0.45 TCGA-43-2578-01 3 42728049 42728049 C G KLHL40 Silent p.G313G 0.39 TCGA-43-2578-01 3 43640090 43640090 T A ANO10 Nonsense_Mutation p.R136* 0.41 TCGA-43-2578-01 3 5025366 5025366 A T BHLHE40 Missense_Mutation p.T410S 0.36 tolerated_low_confidence(0.05) possibly_damaging(0.493) TCGA-43-2578-01 3 98188470 98188470 T A OR5K1 Missense_Mutation p.F17Y 0.33 deleterious(0) probably_damaging(0.987) TCGA-43-2578-01 4 123264619 123264619 C T KIAA1109 Missense_Mutation p.S4136L 0.51 probably_damaging(0.988) TCGA-43-2578-01 4 154702552 154702552 T C SFRP2 3'UTR 0.40 TCGA-43-2578-01 4 16504392 16504392 G T LDB2 Missense_Mutation p.N332K 0.46 deleterious(0.01) possibly_damaging(0.777) TCGA-43-2578-01 4 175238646 175238646 G T CEP44 Intron 0.38 TCGA-43-2578-01 4 1944146 1944146 G T WHSC1 Intron 0.43 TCGA-43-2578-01 4 47809040 47809040 T C CORIN Missense_Mutation p.M30V 0.06 tolerated_low_confidence(0.26) benign(0.001) TCGA-43-2578-01 4 70078389 70078389 T G UGT2B11 Missense_Mutation p.M258L 0.06 deleterious(0.02) benign(0.016) TCGA-43-2578-01 4 71347381 71347381 C A MUC7 Missense_Mutation p.P307Q 0.38 deleterious_low_confidence(0.01) unknown(0) TCGA-43-2578-01 4 88766576 88766576 T C MEPE Missense_Mutation p.Y186H 0.44 tolerated(0.33) benign(0.392) TCGA-43-2578-01 4 96171649 96171649 A T UNC5C Missense_Mutation p.V255D 0.45 deleterious(0) probably_damaging(0.992) TCGA-43-2578-01 5 10403543 10403543 G C MARCH6 Missense_Mutation p.D408H 0.04 deleterious(0) probably_damaging(0.982) TCGA-43-2578-01 5 137426719 137426719 G C WNT8A Missense_Mutation p.R338P 0.33 deleterious(0.01) benign(0.205) TCGA-43-2578-01 5 140724612 140724612 C G PCDHGA3 Missense_Mutation p.L338V 0.42 tolerated_low_confidence(0.18) benign(0.212) TCGA-43-2578-01 5 14485270 14485270 T G TRIO Missense_Mutation p.I2250M 0.44 benign(0.012) TCGA-43-2578-01 5 149754232 149754232 A T TCOF1 Missense_Mutation p.K379M 0.29 deleterious(0.02) possibly_damaging(0.897) TCGA-43-2578-01 5 162930404 162930404 C T MAT2B 5'Flank 0.31 TCGA-43-2578-01 5 167920938 167920938 A G RARS Missense_Mutation p.I137V 0.38 tolerated(1) benign(0.371) TCGA-43-2578-01 5 23527971 23527971 C A PRDM9 3'UTR 0.42 TCGA-43-2578-01 5 45396618 45396618 A G HCN1 Silent p.S402S 0.44 TCGA-43-2578-01 5 52358644 52358644 G C ITGA2 Missense_Mutation p.C496S 0.40 deleterious(0.03) probably_damaging(0.999) TCGA-43-2578-01 5 63256664 63256664 C - HTR1A Frame_Shift_Del p.V295Cfs*50 0.25 TCGA-43-2578-01 5 87492090 87492090 C G TMEM161B Missense_Mutation p.A468P 0.36 deleterious(0.04) probably_damaging(1) TCGA-43-2578-01 6 101075504 101075504 C A ASCC3 Missense_Mutation p.C1535F 0.04 deleterious(0) possibly_damaging(0.823) TCGA-43-2578-01 6 107824935 107824935 G C SOBP Missense_Mutation p.E57D 0.61 tolerated(0.5) benign(0.071) TCGA-43-2578-01 6 109763467 109763467 C G SMPD2 Missense_Mutation p.L125V 0.58 tolerated(0.29) benign(0.086) TCGA-43-2578-01 6 131910675 131910675 T C MED23 Missense_Mutation p.Y1290C 0.31 deleterious(0.01) benign(0.01) TCGA-43-2578-01 6 133783546 133783546 G T EYA4 Missense_Mutation p.G171W 0.24 deleterious(0) probably_damaging(0.991) TCGA-43-2578-01 6 136597502 136597502 T C BCLAF1 Silent p.K387K 0.11 TCGA-43-2578-01 6 152673301 152673301 C A SYNE1 Missense_Mutation p.G3814V 0.40 benign(0.221) TCGA-43-2578-01 6 152762406 152762406 C A SYNE1 Splice_Site p.X1337_splice 0.21 TCGA-43-2578-01 6 155761239 155761239 T G NOX3 Silent p.A173A 0.37 TCGA-43-2578-01 6 157521979 157521979 G A ARID1B Silent p.R1417R 0.26 TCGA-43-2578-01 6 165746503 165746503 G C PDE10A 3'UTR 0.04 TCGA-43-2578-01 6 26104417 26104417 C T HIST1H4C Missense_Mutation p.T81I 0.63 deleterious(0.03) possibly_damaging(0.7) TCGA-43-2578-01 6 26124142 26124142 C A HIST1H2BC 5'Flank 0.71 TCGA-43-2578-01 6 29012897 29012897 T C OR2W1 Missense_Mutation p.N19S 0.22 deleterious(0.02) benign(0) TCGA-43-2578-01 6 36334368 36334368 G T ETV7 3'UTR 0.08 TCGA-43-2578-01 6 74079068 74079068 G T OOEP Missense_Mutation p.S77R 0.65 deleterious(0.01) possibly_damaging(0.469) TCGA-43-2578-01 6 96986576 96986576 A T UFL1 Missense_Mutation p.S350C 0.63 deleterious(0.03) benign(0.443) TCGA-43-2578-01 7 106508783 106508783 G T PIK3CG Missense_Mutation p.M259I 0.64 tolerated(0.06) benign(0.048) TCGA-43-2578-01 7 116759660 116759660 G A ST7 Missense_Mutation p.E94K 0.37 deleterious(0) benign(0.345) TCGA-43-2578-01 7 126410117 126410117 G T GRM8 Missense_Mutation p.L387M 0.30 tolerated(0.13) probably_damaging(0.962) TCGA-43-2578-01 7 132192291 132192291 C A PLXNA4 Missense_Mutation p.V388L 0.26 tolerated(0.13) possibly_damaging(0.578) TCGA-43-2578-01 7 132192292 132192292 C A PLXNA4 Missense_Mutation p.K387N 0.27 tolerated(0.29) possibly_damaging(0.868) TCGA-43-2578-01 7 142176456 142176456 G T TRBV7-4 Silent p.R74R 0.24 TCGA-43-2578-01 7 142231624 142231624 T G TRBV10-1 Missense_Mutation p.E98A 0.05 tolerated(0.06) benign(0.063) TCGA-43-2578-01 7 143175315 143175315 C A TAS2R41 Missense_Mutation p.S117Y 0.42 deleterious(0) benign(0.042) TCGA-43-2578-01 7 143454055 143454055 C G CTAGE6 Missense_Mutation p.V233L 0.16 tolerated(0.7) benign(0.011) TCGA-43-2578-01 7 144097350 144097350 A G NOBOX Silent p.D300D 0.37 TCGA-43-2578-01 7 150439822 150439822 C A GIMAP5 Missense_Mutation p.Q199K 0.35 deleterious(0) probably_damaging(1) TCGA-43-2578-01 7 38785213 38785213 C A VPS41 Missense_Mutation p.A643S 0.39 deleterious(0.02) benign(0.099) TCGA-43-2578-01 7 44571705 44571705 G A NPC1L1 Silent p.L841L 0.54 TCGA-43-2578-01 7 48147045 48147045 G T UPP1 Missense_Mutation p.R245L 0.46 tolerated(0.13) possibly_damaging(0.867) TCGA-43-2578-01 7 64438368 64438368 C A ZNF117 3'UTR 0.48 TCGA-43-2578-01 7 94540121 94540121 G T PPP1R9A Silent p.G232G 0.55 TCGA-43-2578-01 7 98524818 98524818 A G TRRAP Missense_Mutation p.I1002V 0.06 benign(0.014) TCGA-43-2578-01 8 110476998 110476998 C A PKHD1L1 Missense_Mutation p.A2646E 0.25 deleterious(0) possibly_damaging(0.886) TCGA-43-2578-01 8 113301700 113301700 C - CSMD3 Frame_Shift_Del p.S3015Lfs*14 0.33 TCGA-43-2578-01 8 114449095 114449095 G A CSMD3 5'UTR 0.29 TCGA-43-2578-01 8 116617106 116617106 C A TRPS1 Nonsense_Mutation p.E364* 0.43 TCGA-43-2578-01 8 117778804 117778804 G C UTP23 5'UTR 0.35 TCGA-43-2578-01 8 117859646 117859646 C G RAD21 3'UTR 0.42 TCGA-43-2578-01 8 117950629 117950629 C T AARD Silent p.A49A 0.39 TCGA-43-2578-01 8 124349885 124349885 T A ATAD2 Nonsense_Mutation p.K1011* 0.22 TCGA-43-2578-01 8 15967718 15967718 G T MSR1 Missense_Mutation p.P411Q 0.30 tolerated(0.18) possibly_damaging(0.551) TCGA-43-2578-01 8 35647908 35647908 C A UNC5D Missense_Mutation p.P897T 0.08 deleterious(0) probably_damaging(1) TCGA-43-2578-01 8 43054725 43054725 A T HGSNAT 3'UTR 0.78 TCGA-43-2578-01 8 48746885 48746885 G A PRKDC Missense_Mutation p.S2674F 0.29 benign(0.209) TCGA-43-2578-01 8 60031610 60031610 C T TOX 5'UTR 0.39 TCGA-43-2578-01 8 65517287 65517287 G T CYP7B1 Silent p.I395I 0.27 TCGA-43-2578-01 8 65528652 65528652 G A CYP7B1 Missense_Mutation p.S149F 0.37 tolerated(0.5) possibly_damaging(0.642) TCGA-43-2578-01 8 77617884 77617884 G A ZFHX4 Missense_Mutation p.G521S 0.48 probably_damaging(0.931) TCGA-43-2578-01 8 82713558 82713558 T C SNX16 3'UTR 0.42 TCGA-43-2578-01 8 87081732 87081732 G T PSKH2 Silent p.A40A 0.48 TCGA-43-2578-01 8 99148776 99148776 G T POP1 Missense_Mutation p.A360S 0.43 tolerated(0.09) benign(0.002) TCGA-43-2578-01 9 100124029 100124029 G A CCDC180 Missense_Mutation p.E1213K 0.42 tolerated(0.08) benign(0) TCGA-43-2578-01 9 133948095 133948095 T A LAMC3 Missense_Mutation p.L1097Q 0.18 deleterious(0.01) benign(0.146) TCGA-43-2578-01 9 137664641 137664641 C - COL5A1 Frame_Shift_Del p.P765Lfs*39 0.18 TCGA-43-2578-01 9 137801475 137801475 T G FCN1 3'UTR 0.28 TCGA-43-2578-01 9 137982073 137982073 G T OLFM1 Missense_Mutation p.Q43H 0.29 deleterious(0) possibly_damaging(0.522) TCGA-43-2578-01 9 140509312 140509312 C T ARRDC1 Missense_Mutation p.A366V 0.25 tolerated(0.12) benign(0.001) TCGA-43-2578-01 9 27950441 27950441 A G LINGO2 Missense_Mutation p.F77L 0.35 tolerated(0.33) probably_damaging(0.996) TCGA-43-2578-01 9 34514727 34514727 C A DNAI1 Missense_Mutation p.T603K 0.05 tolerated(0.06) benign(0.096) TCGA-43-2578-01 9 43627489 43627489 C A SPATA31A6 Missense_Mutation p.D400Y 0.22 tolerated(1) benign(0.004) TCGA-43-2578-01 9 90502329 90502329 T C SPATA31E1 Missense_Mutation p.V976A 0.13 tolerated(0.28) possibly_damaging(0.55) TCGA-43-2578-01 9 94486343 94486343 C T ROR2 Missense_Mutation p.M811I 0.34 tolerated_low_confidence(0.32) benign(0.01) TCGA-43-2578-01 X 100169714 100169714 G T XKRX Silent p.G321G 0.19 TCGA-43-2578-01 X 100547833 100547833 C G TAF7L Silent p.A67A 0.33 TCGA-43-2578-01 X 101909873 101909873 G A GPRASP1 Missense_Mutation p.M344I 0.16 tolerated(0.21) benign(0.015) TCGA-43-2578-01 X 106092552 106092552 G C TBC1D8B Intron 0.07 TCGA-43-2578-01 X 107978079 107978079 C A IRS4 Missense_Mutation p.R499L 0.32 deleterious_low_confidence(0) unknown(0) TCGA-43-2578-01 X 107978980 107978980 G A IRS4 Missense_Mutation p.L199F 0.33 tolerated(0.58) probably_damaging(0.988) TCGA-43-2578-01 X 118723249 118723249 C G NKRF 3'UTR 0.18 TCGA-43-2578-01 X 123539063 123539069 AAGTGAC - TENM1 Frame_Shift_Del p.V1735Lfs*60 0.15 TCGA-43-2578-01 X 125686050 125686050 G C DCAF12L1 Missense_Mutation p.S181C 0.16 deleterious(0) possibly_damaging(0.469) TCGA-43-2578-01 X 128722174 128722174 C T OCRL Missense_Mutation p.P759S 0.10 deleterious(0.05) probably_damaging(1) TCGA-43-2578-01 X 12904030 12904030 G C TLR7 Missense_Mutation p.D135H 0.18 deleterious(0) probably_damaging(0.996) TCGA-43-2578-01 X 134156424 134156424 G A FAM127C Silent p.R22R 0.12 TCGA-43-2578-01 X 135443706 135443706 A T GPR112 Nonsense_Mutation p.R2413* 0.07 TCGA-43-2578-01 X 135738538 135738538 G T CD40LG Missense_Mutation p.A124S 0.16 deleterious(0) probably_damaging(0.916) TCGA-43-2578-01 X 135957039 135957039 T A RBMX Intron 0.42 TCGA-43-2578-01 X 138644099 138644099 G T F9 Missense_Mutation p.V419L 0.36 tolerated(0.22) possibly_damaging(0.56) TCGA-43-2578-01 X 138870478 138870478 C A ATP11C Missense_Mutation p.A468S 0.15 tolerated(0.1) possibly_damaging(0.903) TCGA-43-2578-01 X 140994297 140994297 C A MAGEC1 Silent p.P369P 0.14 TCGA-43-2578-01 X 141291155 141291155 C T MAGEC2 Missense_Mutation p.V207M 0.32 deleterious(0.03) possibly_damaging(0.625) TCGA-43-2578-01 X 141291463 141291463 C G MAGEC2 Missense_Mutation p.C104S 0.17 tolerated(0.82) benign(0) TCGA-43-2578-01 X 142803719 142803719 C A SPANXN2 Missense_Mutation p.S15I 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-43-2578-01 X 145076308 145076308 T A MIR888 RNA 0.13 TCGA-43-2578-01 X 14599312 14599312 G T GLRA2 Missense_Mutation p.R93L 0.14 deleterious(0.02) probably_damaging(0.982) TCGA-43-2578-01 X 147009842 147009842 G T FMR1 Silent p.V67V 0.18 TCGA-43-2578-01 X 147582605 147582605 C A AFF2 5'UTR 0.14 TCGA-43-2578-01 X 14861877 14861877 C A FANCB Missense_Mutation p.V798F 0.13 tolerated(0.26) benign(0.113) TCGA-43-2578-01 X 148664753 148664753 G A MAGEA9B Missense_Mutation p.A28V 0.20 tolerated(0.25) benign(0.05) TCGA-43-2578-01 X 150867262 150867262 G T PRRG3 5'UTR 0.21 TCGA-43-2578-01 X 152159451 152159451 A C PNMA5 Missense_Mutation p.L231R 0.11 deleterious(0) probably_damaging(1) TCGA-43-2578-01 X 153596279 153596279 T C FLNA Missense_Mutation p.I185V 0.10 tolerated(0.05) benign(0.086) TCGA-43-2578-01 X 153715906 153715906 G T SLC10A3 Silent p.S458S 0.12 TCGA-43-2578-01 X 153774349 153774349 T A G6PD Missense_Mutation p.S38C 0.17 deleterious_low_confidence(0.01) probably_damaging(0.967) TCGA-43-2578-01 X 154493498 154493498 G T RAB39B Missense_Mutation p.R26S 0.09 deleterious(0) possibly_damaging(0.837) TCGA-43-2578-01 X 29972768 29972768 A T IL1RAPL1 Missense_Mutation p.Y444F 0.27 deleterious(0.02) probably_damaging(0.996) TCGA-43-2578-01 X 30269105 30269105 G A MAGEB1 Silent p.L165L 0.37 TCGA-43-2578-01 X 30671633 30671633 C A GK 5'UTR 0.19 TCGA-43-2578-01 X 3240924 3240924 G - MXRA5 Frame_Shift_Del p.T935Pfs*59 0.19 TCGA-43-2578-01 X 34149883 34149883 C T FAM47A Silent p.K171K 0.13 TCGA-43-2578-01 X 34962130 34962130 G T FAM47B Missense_Mutation p.M394I 0.26 tolerated(0.21) benign(0.011) TCGA-43-2578-01 X 36117965 36117965 C A CHDC2 Missense_Mutation p.A274E 0.28 deleterious(0) probably_damaging(0.962) TCGA-43-2578-01 X 37027930 37027930 G T FAM47C Missense_Mutation p.V483L 0.23 tolerated_low_confidence(0.17) possibly_damaging(0.704) TCGA-43-2578-01 X 37028017 37028017 C A FAM47C Missense_Mutation p.P512T 0.18 tolerated_low_confidence(0.12) possibly_damaging(0.794) TCGA-43-2578-01 X 37028891 37028891 C T FAM47C Missense_Mutation p.P803L 0.12 deleterious(0.03) possibly_damaging(0.731) TCGA-43-2578-01 X 38147126 38147126 C A RPGR Missense_Mutation p.D581Y 0.36 possibly_damaging(0.685) TCGA-43-2578-01 X 41555559 41555559 G T GPR34 Missense_Mutation p.V225L 0.14 tolerated(0.5) benign(0.012) TCGA-43-2578-01 X 47308216 47308216 G T ZNF41 Missense_Mutation p.P318Q 0.22 tolerated(1) benign(0) TCGA-43-2578-01 X 48116705 48116705 G T SSX1 Missense_Mutation p.R10I 0.07 tolerated(0.06) possibly_damaging(0.773) TCGA-43-2578-01 X 48207011 48207011 G T SSX3 Silent p.T165T 0.15 TCGA-43-2578-01 X 48931479 48931479 G C PRAF2 Silent p.L56L 0.12 TCGA-43-2578-01 X 49034343 49034343 G A PRICKLE3 Silent p.I318I 0.41 TCGA-43-2578-01 X 49086835 49086835 C A CACNA1F Splice_Site p.X222_splice 0.14 TCGA-43-2578-01 X 50051880 50051880 A C CCNB3 Silent p.A237A 0.11 TCGA-43-2578-01 X 53574675 53574675 G T HUWE1 Missense_Mutation p.T3532N 0.13 unknown(0) TCGA-43-2578-01 X 55513251 55513251 G T USP51 Missense_Mutation p.L708I 0.12 tolerated(0.08) benign(0.004) TCGA-43-2578-01 X 56590724 56590724 A T UBQLN2 Missense_Mutation p.S140C 0.16 deleterious(0.03) possibly_damaging(0.894) TCGA-43-2578-01 X 63411898 63411898 C A AMER1 Silent p.L423L 0.21 TCGA-43-2578-01 X 65476119 65476119 C G HEPH Missense_Mutation p.P1002R 0.15 deleterious(0.01) benign(0.035) TCGA-43-2578-01 X 70316676 70316676 G T FOXO4 Missense_Mutation p.A100S 0.17 deleterious(0) probably_damaging(0.958) TCGA-43-2578-01 X 70387433 70387433 C A NLGN3 Missense_Mutation p.R496S 0.17 tolerated(0.29) benign(0.061) TCGA-43-2578-01 X 70389919 70389919 C A NLGN3 Missense_Mutation p.P840H 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-43-2578-01 X 70472962 70472962 A T ZMYM3 Silent p.P48P 0.21 TCGA-43-2578-01 X 70603813 70603813 T C TAF1 Missense_Mutation p.M670T 0.15 tolerated(0.16) possibly_damaging(0.631) TCGA-43-2578-01 X 71425039 71425039 G C ERCC6L Missense_Mutation p.A1193G 0.11 tolerated(0.18) benign(0.12) TCGA-43-2578-01 X 73070854 73070854 T A XIST RNA 0.36 TCGA-43-2578-01 X 73960135 73960135 G T KIAA2022 Missense_Mutation p.N1419K 0.17 deleterious(0.02) benign(0.256) TCGA-43-2578-01 X 77373610 77373610 A G PGK1 Missense_Mutation p.N195S 0.14 tolerated(0.17) benign(0.002) TCGA-43-2578-01 X 96396771 96396771 A G DIAPH2 Silent p.E899E 0.13 TCGA-43-2581-01 10 103360552 103360552 T A DPCD Missense_Mutation p.V68E 0.24 deleterious(0) probably_damaging(0.994) TCGA-43-2581-01 10 103534511 103534511 C A FGF8 Missense_Mutation p.M105I 0.17 tolerated(0.06) benign(0.006) TCGA-43-2581-01 10 104233430 104233430 G T TMEM180 Silent p.L343L 0.22 TCGA-43-2581-01 10 108357142 108357142 G T SORCS1 Silent p.R1078R 0.14 TCGA-43-2581-01 10 1132230 1132230 C T WDR37 Silent p.H179H 0.12 TCGA-43-2581-01 10 115905433 115905433 G T C10orf118 Silent p.R326R 0.19 TCGA-43-2581-01 10 117823873 117823873 C A GFRA1 3'UTR 0.08 TCGA-43-2581-01 10 117856234 117856234 G T GFRA1 Nonsense_Mutation p.S271* 0.19 TCGA-43-2581-01 10 118202639 118202639 A T PNLIPRP3 Missense_Mutation p.I93L 0.24 deleterious(0.01) benign(0.399) TCGA-43-2581-01 10 126495451 126495451 G T FAM175B Missense_Mutation p.D42Y 0.15 deleterious(0) probably_damaging(0.972) TCGA-43-2581-01 10 127486643 127486643 T A UROS Nonsense_Mutation p.K156* 0.20 TCGA-43-2581-01 10 128202508 128202508 C G C10orf90 Missense_Mutation p.G8A 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-43-2581-01 10 132944875 132944875 C G TCERG1L Silent p.T361T 0.21 TCGA-43-2581-01 10 134161528 134161528 G T LRRC27 Silent p.P198P 0.18 TCGA-43-2581-01 10 135084401 135084401 C T ADAM8 Silent p.Q516Q 0.17 TCGA-43-2581-01 10 15091701 15091701 T A OLAH Missense_Mutation p.W34R 0.19 deleterious(0) probably_damaging(1) TCGA-43-2581-01 10 15091730 15091730 C A OLAH Silent p.A43A 0.17 TCGA-43-2581-01 10 16970248 16970248 C A CUBN Missense_Mutation p.G2060V 0.17 deleterious(0) probably_damaging(0.997) TCGA-43-2581-01 10 17865237 17865237 G C MRC1L1 Missense_Mutation p.G76R 0.18 probably_damaging(1) TCGA-43-2581-01 10 18254524 18254524 G T SLC39A12 Missense_Mutation p.G219V 0.19 deleterious(0) possibly_damaging(0.901) TCGA-43-2581-01 10 18292058 18292058 C A SLC39A12 Intron 0.15 TCGA-43-2581-01 10 28822470 28822470 C G WAC 5'UTR 0.27 TCGA-43-2581-01 10 30318157 30318157 C A KIAA1462 Missense_Mutation p.G307V 0.21 deleterious(0.04) possibly_damaging(0.773) TCGA-43-2581-01 10 37508145 37508145 A T ANKRD30A Nonsense_Mutation p.K1113* 0.24 TCGA-43-2581-01 10 37508147 37508147 A T ANKRD30A Missense_Mutation p.K1113N 0.23 tolerated(0.56) possibly_damaging(0.788) TCGA-43-2581-01 10 37508622 37508623 AG T ANKRD30A Frame_Shift_Del p.N1274Ifs*8 0.19 TCGA-43-2581-01 10 38246011 38246011 T A ZNF25 Nonsense_Mutation p.K59* 0.13 TCGA-43-2581-01 10 42947110 42947110 G T CCNYL2 RNA 0.16 TCGA-43-2581-01 10 48390083 48390083 G T RBP3 Missense_Mutation p.D265E 0.20 tolerated(0.09) probably_damaging(0.952) TCGA-43-2581-01 10 50820153 50820153 G T SLC18A3 Missense_Mutation p.G456V 0.21 tolerated(0.06) probably_damaging(0.973) TCGA-43-2581-01 10 50916598 50916598 G T C10orf53 Missense_Mutation p.G137C 0.20 deleterious_low_confidence(0) benign(0.12) TCGA-43-2581-01 10 51562436 51562436 C A MSMB 3'UTR 0.24 TCGA-43-2581-01 10 51748361 51748361 A T AGAP6 5'Flank 0.15 TCGA-43-2581-01 10 53458658 53458658 C A CSTF2T Missense_Mutation p.G218C 0.16 deleterious(0.01) possibly_damaging(0.536) TCGA-43-2581-01 10 54530477 54530477 C A MBL2 Missense_Mutation p.G86V 0.23 deleterious(0) probably_damaging(1) TCGA-43-2581-01 10 5781663 5781663 A G FAM208B Silent p.Q510Q 0.12 TCGA-43-2581-01 10 6067808 6067808 C A IL2RA Missense_Mutation p.C82F 0.20 deleterious(0) probably_damaging(1) TCGA-43-2581-01 10 61830101 61830101 G A ANK3 Missense_Mutation p.S3513L 0.18 benign(0.037) TCGA-43-2581-01 10 68526128 68526128 G A CTNNA3 Missense_Mutation p.T392M 0.09 deleterious(0) probably_damaging(0.997) TCGA-43-2581-01 10 69948693 69948693 T A MYPN Missense_Mutation p.L912Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-43-2581-01 10 71393009 71393009 G A C10orf35 3'UTR 0.18 TCGA-43-2581-01 10 87484170 87484170 C A GRID1 Silent p.P599P 0.22 TCGA-43-2581-01 10 88768600 88768600 T C RP11-96C23.10 3'Flank 0.19 TCGA-43-2581-01 10 93209 93209 G T TUBB8 Missense_Mutation p.Q375K 0.19 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-43-2581-01 10 95790601 95790601 A G PLCE1 5'UTR 0.33 TCGA-43-2581-01 10 96116960 96116960 C A NOC3L Missense_Mutation p.G160V 0.15 deleterious(0) probably_damaging(0.974) TCGA-43-2581-01 10 96352231 96352231 G T HELLS Missense_Mutation p.R644M 0.22 deleterious(0) probably_damaging(0.959) TCGA-43-2581-01 10 96535186 96535186 G T CYP2C19 Missense_Mutation p.R124L 0.15 deleterious(0) probably_damaging(0.995) TCGA-43-2581-01 10 97099061 97099061 C A SORBS1 Silent p.R898R 0.17 TCGA-43-2581-01 10 97099062 97099062 C A SORBS1 Missense_Mutation p.R898L 0.16 deleterious(0) possibly_damaging(0.694) TCGA-43-2581-01 10 98924621 98924621 C A ARHGAP19-SLIT1 Nonsense_Mutation p.G501* 0.12 TCGA-43-2581-01 11 103175332 103175332 G C DYNC2H1 Missense_Mutation p.M3762I 0.11 possibly_damaging(0.607) TCGA-43-2581-01 11 106856835 106856835 A T GUCY1A2 Missense_Mutation p.L109H 0.17 deleterious(0) probably_damaging(0.996) TCGA-43-2581-01 11 107920688 107920688 A G CUL5 Silent p.T102T 0.13 TCGA-43-2581-01 11 1083836 1083836 G T MUC2 Missense_Mutation p.G790C 0.41 probably_damaging(0.989) TCGA-43-2581-01 11 108546406 108546406 G C DDX10 Missense_Mutation p.G111R 0.26 deleterious(0) probably_damaging(0.997) TCGA-43-2581-01 11 111338323 111338323 C T BTG4 3'UTR 0.24 TCGA-43-2581-01 11 113283456 113283456 G T DRD2 Missense_Mutation p.D320E 0.29 tolerated(1) benign(0.002) TCGA-43-2581-01 11 113934714 113934714 G C ZBTB16 Missense_Mutation p.G231A 0.25 tolerated(0.81) benign(0) TCGA-43-2581-01 11 116661185 116661185 G T APOA5 Missense_Mutation p.R254S 0.30 deleterious(0.02) possibly_damaging(0.753) TCGA-43-2581-01 11 118952272 118952272 C T VPS11 Missense_Mutation p.T921I 0.21 tolerated(0.46) benign(0.008) TCGA-43-2581-01 11 123811091 123811091 C A OR4D5 Nonsense_Mutation p.Y256* 0.20 TCGA-43-2581-01 11 124761298 124761298 G T ROBO4 Silent p.S615S 0.10 TCGA-43-2581-01 11 129817094 129817094 C A PRDM10 Missense_Mutation p.D156Y 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-43-2581-01 11 17464790 17464790 T A ABCC8 Missense_Mutation p.I468F 0.18 tolerated(0.25) benign(0.314) TCGA-43-2581-01 11 1955238 1955238 G T TNNT3 Silent p.A122A 0.21 TCGA-43-2581-01 11 22279266 22279266 G A ANO5 Nonsense_Mutation p.W458* 0.14 TCGA-43-2581-01 11 22398151 22398151 C G SLC17A6 Missense_Mutation p.S449W 0.23 deleterious(0) probably_damaging(0.999) TCGA-43-2581-01 11 2441528 2441528 C A TRPM5 Silent p.P191P 0.13 TCGA-43-2581-01 11 25100169 25100169 G C LUZP2 Missense_Mutation p.E336Q 0.26 tolerated_low_confidence(0.14) possibly_damaging(0.526) TCGA-43-2581-01 11 26692798 26692798 C A SLC5A12 Nonsense_Mutation p.E570* 0.15 TCGA-43-2581-01 11 26725101 26725101 G - SLC5A12 Frame_Shift_Del p.C266* 0.17 TCGA-43-2581-01 11 26743306 26743306 G T SLC5A12 5'UTR 0.09 TCGA-43-2581-01 11 32705049 32705049 G T CCDC73 Intron 0.13 TCGA-43-2581-01 11 33564801 33564801 T A KIAA1549L Missense_Mutation p.S267R 0.13 tolerated_low_confidence(0.17) benign(0.014) TCGA-43-2581-01 11 36597901 36597901 G T RAG1 Missense_Mutation p.G1016V 0.22 tolerated_low_confidence(0.16) benign(0.42) TCGA-43-2581-01 11 3721997 3721997 C A NUP98 Missense_Mutation p.M1195I 0.08 tolerated(0.61) benign(0.001) TCGA-43-2581-01 11 44940769 44940769 C T TSPAN18 Missense_Mutation p.T113I 0.19 deleterious(0.05) possibly_damaging(0.507) TCGA-43-2581-01 11 4510904 4510904 C A OR52K1 Silent p.V258V 0.14 TCGA-43-2581-01 11 47496952 47496952 G A CELF1 Silent p.P401P 0.16 TCGA-43-2581-01 11 48158554 48158554 G T PTPRJ Splice_Site p.X625_splice 0.15 TCGA-43-2581-01 11 4825140 4825140 C A OR52R1 Silent p.L157L 0.22 TCGA-43-2581-01 11 5010952 5010952 G T MMP26 Silent p.L58L 0.14 TCGA-43-2581-01 11 51411897 51411897 C A OR4A5 Missense_Mutation p.G167C 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-43-2581-01 11 5221084 5221084 C T OR51V1 Missense_Mutation p.V283I 0.26 tolerated(0.91) benign(0.182) TCGA-43-2581-01 11 5364731 5364732 - T OR51B5 Frame_Shift_Ins p.H8Qfs*41 0.17 TCGA-43-2581-01 11 5410720 5410720 G T OR51M1 Missense_Mutation p.G31V 0.15 deleterious(0) probably_damaging(0.923) TCGA-43-2581-01 11 551758 551758 G T LRRC56 Missense_Mutation p.G302C 0.13 tolerated(0.11) probably_damaging(0.935) TCGA-43-2581-01 11 55406533 55406533 G A OR4P4 Missense_Mutation p.A234T 0.16 deleterious(0) probably_damaging(0.992) TCGA-43-2581-01 11 55798552 55798552 T G OR5AS1 Missense_Mutation p.C220G 0.11 tolerated(0.14) possibly_damaging(0.685) TCGA-43-2581-01 11 57185284 57185284 C A SLC43A3 Missense_Mutation p.R203L 0.13 deleterious(0) probably_damaging(0.946) TCGA-43-2581-01 11 57886239 57886239 C A OR9I1 Missense_Mutation p.L226F 0.14 deleterious(0.01) benign(0.114) TCGA-43-2581-01 11 58317460 58317460 C G LPXN Missense_Mutation p.A221P 0.23 deleterious(0) probably_damaging(0.984) TCGA-43-2581-01 11 58714632 58714632 C A GLYATL1 Intron 0.24 TCGA-43-2581-01 11 59626557 59626557 G A TCN1 Missense_Mutation p.A247V 0.22 deleterious(0) probably_damaging(0.996) TCGA-43-2581-01 11 59834453 59834453 C A MS4A3 Silent p.A127A 0.22 TCGA-43-2581-01 11 60199938 60199938 C A MS4A5 Missense_Mutation p.L113M 0.14 tolerated(0.24) possibly_damaging(0.732) TCGA-43-2581-01 11 60666020 60666020 T A PRPF19 Missense_Mutation p.D378V 0.20 deleterious(0) probably_damaging(0.989) TCGA-43-2581-01 11 60785353 60785353 G T CD6 Missense_Mutation p.G569W 0.20 deleterious(0) probably_damaging(0.998) TCGA-43-2581-01 11 61034964 61034964 C T VWCE Silent p.V645V 0.13 TCGA-43-2581-01 11 6221388 6221388 C A OR52W1 Missense_Mutation p.T312N 0.14 deleterious(0.02) benign(0.03) TCGA-43-2581-01 11 62472996 62472996 C G BSCL2 Missense_Mutation p.A61P 0.26 tolerated_low_confidence(0.07) benign(0.008) TCGA-43-2581-01 11 63964753 63964753 A T STIP1 Missense_Mutation p.E228V 0.26 deleterious(0) probably_damaging(0.986) TCGA-43-2581-01 11 64331800 64331800 G T SLC22A11 Missense_Mutation p.R281L 0.19 deleterious(0.02) benign(0.359) TCGA-43-2581-01 11 64402922 64402922 C G NRXN2 Missense_Mutation p.G1136R 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-43-2581-01 11 64722210 64722210 C T C11orf85 Intron 0.07 TCGA-43-2581-01 11 65811043 65811043 C A GAL3ST3 Silent p.T77T 0.11 TCGA-43-2581-01 11 68305322 68305322 G T PPP6R3 Nonsense_Mutation p.E64* 0.23 TCGA-43-2581-01 11 68369334 68369334 A T PPP6R3 Silent p.T732T 0.17 TCGA-43-2581-01 11 68748106 68748106 G T MRGPRD Missense_Mutation p.T117K 0.22 deleterious(0) probably_damaging(0.997) TCGA-43-2581-01 11 69588214 69588214 G - FGF4 Frame_Shift_Del p.L162Ffs*20 0.17 TCGA-43-2581-01 11 7111458 7111458 C A RBMXL2 Silent p.G369G 0.36 TCGA-43-2581-01 11 71943768 71943768 G T INPPL1 Missense_Mutation p.W604L 0.08 deleterious(0) probably_damaging(1) TCGA-43-2581-01 11 72145562 72145562 T A CLPB 5'UTR 0.27 TCGA-43-2581-01 11 74904399 74904399 C A SLCO2B1 Silent p.I404I 0.30 TCGA-43-2581-01 11 76370687 76370687 G A LRRC32 Silent p.C650C 0.22 TCGA-43-2581-01 11 76370871 76370871 C A LRRC32 Missense_Mutation p.R589L 0.11 tolerated(0.33) benign(0.006) TCGA-43-2581-01 11 7949672 7949672 C G OR10A6 Missense_Mutation p.E180Q 0.11 deleterious(0) probably_damaging(0.959) TCGA-43-2581-01 11 82443436 82443436 C T FAM181B 3'UTR 0.17 TCGA-43-2581-01 11 86518796 86518796 C T PRSS23 Silent p.L37L 0.17 TCGA-43-2581-01 11 88301072 88301072 G T GRM5 Silent p.A593A 0.20 TCGA-43-2581-01 11 92569862 92569862 G T FAT3 Missense_Mutation p.R3406L 0.08 probably_damaging(1) TCGA-43-2581-01 11 92624106 92624106 A T FAT3 Missense_Mutation p.S4533C 0.29 possibly_damaging(0.471) TCGA-43-2581-01 12 108634306 108634306 C T WSCD2 Missense_Mutation p.H444Y 0.32 tolerated(0.07) possibly_damaging(0.541) TCGA-43-2581-01 12 109880041 109880041 G T MYO1H Silent p.P868P 0.33 TCGA-43-2581-01 12 110221577 110221577 C A TRPV4 Missense_Mutation p.W822L 0.28 deleterious(0) possibly_damaging(0.792) TCGA-43-2581-01 12 111342442 111342442 C A CCDC63 Missense_Mutation p.R465S 0.30 tolerated(0.05) probably_damaging(0.997) TCGA-43-2581-01 12 11286441 11286441 C A TAS2R30 Missense_Mutation p.G135W 0.14 deleterious(0.01) probably_damaging(1) TCGA-43-2581-01 12 11286442 11286442 C G TAS2R30 Missense_Mutation p.L134F 0.15 deleterious(0.05) benign(0.315) TCGA-43-2581-01 12 113307720 113307720 C A RPH3A Silent p.P224P 0.18 TCGA-43-2581-01 12 113905980 113905980 G A LHX5 Silent p.I209I 0.50 TCGA-43-2581-01 12 117768670 117768670 C A NOS1 Missense_Mutation p.G69C 0.40 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-43-2581-01 12 132403136 132403136 C T ULK1 Silent p.H807H 0.23 TCGA-43-2581-01 12 13720189 13720189 C A GRIN2B Nonsense_Mutation p.E790* 0.24 TCGA-43-2581-01 12 1702821 1702821 T A FBXL14 Missense_Mutation p.I138L 0.13 tolerated(0.55) benign(0.034) TCGA-43-2581-01 12 1943679 1943679 C G LRTM2 Missense_Mutation p.A302G 0.22 deleterious(0) benign(0.12) TCGA-43-2581-01 12 19511300 19511300 A G PLEKHA5 Missense_Mutation p.I1093V 0.25 tolerated(1) benign(0.005) TCGA-43-2581-01 12 20896273 20896273 G T SLCO1C1 Missense_Mutation p.G590C 0.21 deleterious(0) probably_damaging(1) TCGA-43-2581-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.11 deleterious(0) possibly_damaging(0.479) TCGA-43-2581-01 12 26781008 26781008 C T ITPR2 Missense_Mutation p.E1008K 0.26 tolerated(0.21) benign(0.017) TCGA-43-2581-01 12 272696 272696 A T IQSEC3 Missense_Mutation p.S874C 0.08 tolerated(1) benign(0.121) TCGA-43-2581-01 12 27845547 27845547 G T PPFIBP1 Silent p.V969V 0.12 TCGA-43-2581-01 12 29624819 29624819 C A OVCH1 Missense_Mutation p.G591V 0.15 deleterious(0.01) probably_damaging(0.976) TCGA-43-2581-01 12 33592368 33592368 C A SYT10 Missense_Mutation p.E30D 0.26 tolerated(0.48) benign(0) TCGA-43-2581-01 12 39695426 39695426 T G KIF21A Missense_Mutation p.H1596P 0.08 tolerated(0.26) benign(0.18) TCGA-43-2581-01 12 42749002 42749002 G C PPHLN1 Missense_Mutation p.A93P 0.45 tolerated(0.05) possibly_damaging(0.616) TCGA-43-2581-01 12 42864156 42864156 C A PRICKLE1 Missense_Mutation p.Q46H 0.50 tolerated(1) benign(0.141) TCGA-43-2581-01 12 49171511 49171511 C A ADCY6 Silent p.L341L 0.30 TCGA-43-2581-01 12 52282414 52282414 G T ANKRD33 Missense_Mutation p.A70S 0.39 tolerated_low_confidence(0.11) benign(0.002) TCGA-43-2581-01 12 52282513 52282513 T G ANKRD33 Missense_Mutation p.C103G 0.26 deleterious(0) probably_damaging(0.996) TCGA-43-2581-01 12 54765501 54765501 T A ZNF385A Splice_Site p.X141_splice 0.30 TCGA-43-2581-01 12 55026026 55026026 C T LACRT Silent p.L84L 0.05 TCGA-43-2581-01 12 55615677 55615677 A G OR10A7 Missense_Mutation p.Y290C 0.30 deleterious(0) probably_damaging(1) TCGA-43-2581-01 12 58019551 58019551 C A SLC26A10 3'UTR 0.32 TCGA-43-2581-01 12 63541320 63541320 C A AVPR1A Missense_Mutation p.C359F 0.29 tolerated(0.79) benign(0.002) TCGA-43-2581-01 12 63544622 63544622 C A AVPR1A 5'UTR 0.36 TCGA-43-2581-01 12 64889504 64889504 A T TBK1 Missense_Mutation p.N557Y 0.22 deleterious(0) benign(0.17) TCGA-43-2581-01 12 6928576 6928576 A T CD4 3'UTR 0.32 TCGA-43-2581-01 12 772710 772710 G A NINJ2 5'UTR 0.28 TCGA-43-2581-01 12 81568681 81568681 C A ACSS3 Missense_Mutation p.P405T 0.07 deleterious(0.01) probably_damaging(1) TCGA-43-2581-01 12 8200823 8200823 A T FOXJ2 Missense_Mutation p.Q388L 0.12 tolerated(0.13) benign(0.034) TCGA-43-2581-01 12 85623386 85623386 G T LRRIQ1 Missense_Mutation p.Q1638H 0.29 deleterious(0.02) benign(0.21) TCGA-43-2581-01 12 89997946 89997946 C A ATP2B1 Missense_Mutation p.A874S 0.34 deleterious(0.04) probably_damaging(0.998) TCGA-43-2581-01 12 9318668 9318668 G T PZP Silent p.I746I 0.16 TCGA-43-2581-01 12 977282 977282 A T WNK1 Intron 0.20 TCGA-43-2581-01 13 110823047 110823047 C G COL4A1 Missense_Mutation p.A1197P 0.27 benign(0.174) TCGA-43-2581-01 13 111973110 111973110 G T TEX29 Splice_Site 0.41 TCGA-43-2581-01 13 115091461 115091461 G A CHAMP1 Missense_Mutation p.C715Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-43-2581-01 13 19751301 19751301 C A TUBA3C Silent p.P274P 0.34 TCGA-43-2581-01 13 24861019 24861019 G T SPATA13 Silent p.R866R 0.23 TCGA-43-2581-01 13 27333176 27333176 G T GPR12 Nonsense_Mutation p.C263* 0.29 TCGA-43-2581-01 13 42295625 42295625 C A VWA8 Nonsense_Mutation p.E949* 0.28 TCGA-43-2581-01 13 46701662 46701662 C T LCP1 3'UTR 0.25 TCGA-43-2581-01 13 49833557 49833557 G T CDADC1 Missense_Mutation p.A110S 0.23 deleterious(0.05) possibly_damaging(0.861) TCGA-43-2581-01 13 51969452 51969452 C G INTS6 Missense_Mutation p.M199I 0.27 tolerated(0.06) benign(0.022) TCGA-43-2581-01 13 53603144 53603144 G A OLFM4 Missense_Mutation p.R58H 0.23 tolerated_low_confidence(0.12) unknown(0) TCGA-43-2581-01 13 58298892 58298892 G T PCDH17 Missense_Mutation p.V982F 0.23 tolerated(0.33) possibly_damaging(0.616) TCGA-43-2581-01 13 76427279 76427279 G T LMO7 Missense_Mutation p.Q1239H 0.21 tolerated(0.42) benign(0.015) TCGA-43-2581-01 13 77670580 77670580 C A MYCBP2 Missense_Mutation p.S3236I 0.27 possibly_damaging(0.856) TCGA-43-2581-01 13 79191192 79191192 C A RNF219 Missense_Mutation p.R235L 0.23 deleterious(0.02) possibly_damaging(0.79) TCGA-43-2581-01 13 84453489 84453489 G T SLITRK1 3'UTR 0.31 TCGA-43-2581-01 13 84454608 84454608 G T SLITRK1 Nonsense_Mutation p.C345* 0.20 TCGA-43-2581-01 14 100792493 100792493 G T SLC25A47 Splice_Site p.X25_splice 0.24 TCGA-43-2581-01 14 105929528 105929528 G C MTA1 Missense_Mutation p.W317S 0.12 deleterious(0) probably_damaging(0.998) TCGA-43-2581-01 14 105929529 105929529 G T MTA1 Missense_Mutation p.W317C 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-43-2581-01 14 106054520 106054520 G T IGHA2 Silent p.T71T 0.14 TCGA-43-2581-01 14 106109833 106109833 G T IGHG2 Missense_Mutation p.L230M 0.13 tolerated(0.1) possibly_damaging(0.893) TCGA-43-2581-01 14 106320707 106320707 C T IGHM Missense_Mutation p.R368K 0.15 tolerated(1) benign(0.003) TCGA-43-2581-01 14 106586232 106586232 G T IGHV3-13 Silent p.R85R 0.25 TCGA-43-2581-01 14 107198961 107198961 C A IGHV3-72 Nonsense_Mutation p.E110* 0.15 TCGA-43-2581-01 14 19553862 19553862 G T POTEG Missense_Mutation p.W149L 0.11 tolerated(0.68) benign(0.115) TCGA-43-2581-01 14 19553863 19553863 G T POTEG Missense_Mutation p.W149C 0.10 tolerated(0.17) probably_damaging(0.962) TCGA-43-2581-01 14 20502158 20502158 A T OR4K13 Missense_Mutation p.C254S 0.23 deleterious(0.03) benign(0.088) TCGA-43-2581-01 14 20528846 20528846 C A OR4L1 Missense_Mutation p.L215I 0.17 tolerated(0.19) benign(0.344) TCGA-43-2581-01 14 20711154 20711154 C A OR11H4 Silent p.P68P 0.18 TCGA-43-2581-01 14 20852215 20852215 C T TEP1 Silent p.Q1172Q 0.19 TCGA-43-2581-01 14 23902752 23902752 C A MYH7 Nonsense_Mutation p.E64* 0.21 TCGA-43-2581-01 14 28733880 28733880 G A BNIP3P1 RNA 0.20 TCGA-43-2581-01 14 38678680 38678680 G T SSTR1 Missense_Mutation p.G29V 0.20 tolerated(0.73) unknown(0) TCGA-43-2581-01 14 39650616 39650616 A C PNN Missense_Mutation p.N568T 0.14 deleterious_low_confidence(0) unknown(0) TCGA-43-2581-01 14 42373533 42373533 G C LRFN5 3'UTR 0.10 TCGA-43-2581-01 14 45403487 45403487 C A KLHL28 Missense_Mutation p.G392C 0.22 deleterious(0) probably_damaging(1) TCGA-43-2581-01 14 50101114 50101114 C A DNAAF2 Nonsense_Mutation p.E252* 0.24 TCGA-43-2581-01 14 50101368 50101368 G T DNAAF2 Missense_Mutation p.T167K 0.24 deleterious(0) possibly_damaging(0.793) TCGA-43-2581-01 14 53331191 53331191 C A FERMT2 Missense_Mutation p.E510D 0.19 tolerated(1) benign(0.003) TCGA-43-2581-01 14 57268835 57268835 G A OTX2 Missense_Mutation p.P171L 0.19 tolerated(0.07) benign(0.053) TCGA-43-2581-01 14 65262186 65262186 T C SPTB Missense_Mutation p.N505D 0.23 deleterious(0) possibly_damaging(0.895) TCGA-43-2581-01 14 67826554 67826554 C T ATP6V1D 5'UTR 0.30 TCGA-43-2581-01 14 70263893 70263893 G T SLC10A1 5'UTR 0.19 TCGA-43-2581-01 14 70634703 70634703 G T SLC8A3 Missense_Mutation p.P146H 0.18 deleterious(0) probably_damaging(1) TCGA-43-2581-01 14 70634704 70634704 G T SLC8A3 Missense_Mutation p.P146T 0.17 deleterious(0) probably_damaging(1) TCGA-43-2581-01 14 72943484 72943484 A T RGS6 Missense_Mutation p.Q243L 0.18 tolerated(0.34) benign(0.206) TCGA-43-2581-01 14 73444752 73444752 C A ZFYVE1 Silent p.G506G 0.24 TCGA-43-2581-01 14 76905949 76905949 G A ESRRB Missense_Mutation p.E85K 0.22 tolerated(0.07) benign(0.206) TCGA-43-2581-01 14 81329203 81329203 C A CEP128 Silent p.V220V 0.17 TCGA-43-2581-01 14 88652094 88652094 C A KCNK10 Missense_Mutation p.D473Y 0.21 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-43-2581-01 14 91770322 91770322 C A CCDC88C Missense_Mutation p.V1120L 0.20 deleterious(0) possibly_damaging(0.885) TCGA-43-2581-01 14 94933627 94933627 G A SERPINA9 Missense_Mutation p.H259Y 0.21 tolerated(0.22) possibly_damaging(0.674) TCGA-43-2581-01 14 96178652 96178652 C A TCL1A Missense_Mutation p.G68C 0.20 tolerated(0.05) possibly_damaging(0.868) TCGA-43-2581-01 15 100331139 100331139 C G AC090825.1 5'Flank 0.08 TCGA-43-2581-01 15 23811037 23811037 G C MKRN3 Missense_Mutation p.E36D 0.08 tolerated(0.15) benign(0.001) TCGA-43-2581-01 15 25470433 25470433 G T SNORD115-27 3'Flank 0.10 TCGA-43-2581-01 15 28000529 28000529 G T OCA2 3'UTR 0.12 TCGA-43-2581-01 15 31342635 31342635 G T TRPM1 Silent p.R489R 0.11 TCGA-43-2581-01 15 34130268 34130268 A G RYR3 Silent p.L4029L 0.09 TCGA-43-2581-01 15 35529784 35529784 G C ANP32AP1 RNA 0.12 TCGA-43-2581-01 15 42171652 42171652 C A SPTBN5 Silent p.L996L 0.15 TCGA-43-2581-01 15 45440468 45440468 A - DUOX1 Splice_Site p.X881_splice 0.16 TCGA-43-2581-01 15 48435226 48435226 G C MYEF2 Nonsense_Mutation p.S561* 0.09 TCGA-43-2581-01 15 50593426 50593426 T A GABPB1 Missense_Mutation p.K204M 0.14 tolerated(0.07) benign(0.071) TCGA-43-2581-01 15 50853917 50853917 G C TRPM7 Silent p.T1852T 0.13 TCGA-43-2581-01 15 54305916 54305916 C A UNC13C Missense_Mutation p.H272Q 0.14 tolerated_low_confidence(0.69) benign(0.001) TCGA-43-2581-01 15 57731050 57731050 G C CGNL1 Missense_Mutation p.G285R 0.17 deleterious(0) probably_damaging(0.997) TCGA-43-2581-01 15 63012046 63012046 G T TLN2 Silent p.L986L 0.14 TCGA-43-2581-01 15 65680825 65680825 C A IGDCC4 Missense_Mutation p.R936L 0.14 tolerated(0.3) benign(0.07) TCGA-43-2581-01 15 65681677 65681677 G A IGDCC4 Silent p.G827G 0.12 TCGA-43-2581-01 15 68937591 68937591 C A CORO2B Silent p.I36I 0.15 TCGA-43-2581-01 15 74631989 74631989 C A CYP11A1 Missense_Mutation p.D366Y 0.18 deleterious(0) probably_damaging(0.992) TCGA-43-2581-01 15 76630195 76630195 C A ISL2 Missense_Mutation p.D45E 0.15 deleterious(0) benign(0.35) TCGA-43-2581-01 15 78212125 78212125 C A RP11-114H24.7 Intron 0.11 TCGA-43-2581-01 15 81625201 81625201 G T TMC3 Silent p.I954I 0.17 TCGA-43-2581-01 15 81625294 81625294 C A TMC3 Missense_Mutation p.R923S 0.10 deleterious_low_confidence(0) benign(0.272) TCGA-43-2581-01 15 82512461 82512461 C A EFTUD1 Missense_Mutation p.G468W 0.12 deleterious(0) benign(0.325) TCGA-43-2581-01 15 83215198 83215198 C A CPEB1 Missense_Mutation p.R523L 0.12 deleterious(0) possibly_damaging(0.854) TCGA-43-2581-01 15 83499355 83499355 G T WHAMM Missense_Mutation p.R549L 0.10 tolerated(0.67) benign(0.035) TCGA-43-2581-01 15 83820017 83820017 C A HDGFRP3 Missense_Mutation p.G186C 0.10 deleterious_low_confidence(0.01) benign(0.28) TCGA-43-2581-01 15 88678524 88678524 T A NTRK3 Missense_Mutation p.N338Y 0.14 deleterious(0) probably_damaging(0.934) TCGA-43-2581-01 15 89385000 89385000 G C ACAN Missense_Mutation p.C220S 0.12 deleterious(0) unknown(0) TCGA-43-2581-01 15 89386768 89386768 G T ACAN Missense_Mutation p.A314S 0.15 deleterious(0) unknown(0) TCGA-43-2581-01 15 89402124 89402124 C A ACAN Missense_Mutation p.T2103K 0.10 deleterious(0) possibly_damaging(0.809) TCGA-43-2581-01 15 90188244 90188244 C T KIF7 Missense_Mutation p.G731R 0.10 deleterious(0.01) probably_damaging(1) TCGA-43-2581-01 15 90258228 90258228 C A WDR93 Missense_Mutation p.L220M 0.11 deleterious(0) probably_damaging(0.998) TCGA-43-2581-01 15 91030219 91030219 A T IQGAP1 Missense_Mutation p.K1353M 0.12 deleterious(0.03) benign(0.01) TCGA-43-2581-01 16 12145889 12145889 G T SNX29 Missense_Mutation p.G312W 0.09 deleterious_low_confidence(0.03) probably_damaging(0.948) TCGA-43-2581-01 16 1261799 1261799 C G CACNA1H Missense_Mutation p.D1520E 0.13 deleterious(0) probably_damaging(0.997) TCGA-43-2581-01 16 1451674 1451674 T A UNKL Missense_Mutation p.N165Y 0.09 deleterious(0) benign(0.396) TCGA-43-2581-01 16 14645942 14645942 C G PARN Missense_Mutation p.Q472H 0.16 tolerated(0.31) benign(0.003) TCGA-43-2581-01 16 15120546 15120546 A T PDXDC1 Missense_Mutation p.Q396L 0.06 tolerated(0.19) benign(0.001) TCGA-43-2581-01 16 19741749 19741749 T C IQCK Intron 0.07 TCGA-43-2581-01 16 20410444 20410444 G T PDILT Missense_Mutation p.T60N 0.20 tolerated(0.09) probably_damaging(0.99) TCGA-43-2581-01 16 20471479 20471479 G C ACSM2A Missense_Mutation p.G15R 0.23 tolerated(0.14) benign(0.038) TCGA-43-2581-01 16 21053522 21053522 C A DNAH3 Nonsense_Mutation p.E1489* 0.28 TCGA-43-2581-01 16 21261272 21261272 C A ANKS4B Missense_Mutation p.P129T 0.25 deleterious(0) possibly_damaging(0.77) TCGA-43-2581-01 16 2126551 2126551 G T TSC2 Missense_Mutation p.R934S 0.16 deleterious(0) probably_damaging(0.997) TCGA-43-2581-01 16 21991974 21991974 A G UQCRC2 Missense_Mutation p.T411A 0.17 tolerated(0.93) benign(0) TCGA-43-2581-01 16 22563702 22563702 C G RP11-368J21.3 Intron 0.07 TCGA-43-2581-01 16 23713835 23713835 G A ERN2 Silent p.P367P 0.18 TCGA-43-2581-01 16 23768979 23768979 G T CHP2 3'UTR 0.06 TCGA-43-2581-01 16 25255469 25255469 C A ZKSCAN2 Nonsense_Mutation p.E540* 0.14 TCGA-43-2581-01 16 27441381 27441381 G T IL21R 5'UTR 0.23 TCGA-43-2581-01 16 2818222 2818222 G T SRRM2 Missense_Mutation p.G2565C 0.17 probably_damaging(0.998) TCGA-43-2581-01 16 28967353 28967353 G A NFATC2IP Silent p.T211T 0.17 TCGA-43-2581-01 16 30037024 30037024 T A FAM57B Intron 0.18 TCGA-43-2581-01 16 304613 304613 A G ITFG3 Silent p.S67S 0.06 TCGA-43-2581-01 16 30978363 30978363 G T SETD1A Silent p.L888L 0.27 TCGA-43-2581-01 16 31368399 31368399 A G ITGAX Missense_Mutation p.T99A 0.15 tolerated(1) benign(0.001) TCGA-43-2581-01 16 31422800 31422800 G C ITGAD Missense_Mutation p.G557R 0.15 deleterious(0) probably_damaging(0.982) TCGA-43-2581-01 16 31437393 31437393 G C ITGAD Missense_Mutation p.A1144P 0.17 deleterious(0.02) benign(0.007) TCGA-43-2581-01 16 3339778 3339778 A G ZNF263 Silent p.L424L 0.18 TCGA-43-2581-01 16 3613871 3613871 G T NLRC3 Missense_Mutation p.P403H 0.17 deleterious(0.02) benign(0.289) TCGA-43-2581-01 16 3929873 3929873 G C CREBBP Silent p.A15A 0.14 TCGA-43-2581-01 16 4016469 4016469 C T ADCY9 Silent p.A1123A 0.19 TCGA-43-2581-01 16 47581372 47581372 G T PHKB Missense_Mutation p.C208F 0.17 tolerated(0.19) possibly_damaging(0.589) TCGA-43-2581-01 16 49670120 49670120 G T ZNF423 Missense_Mutation p.H981Q 0.24 deleterious(0) possibly_damaging(0.841) TCGA-43-2581-01 16 49672002 49672002 C A ZNF423 Missense_Mutation p.S354I 0.23 deleterious(0) probably_damaging(0.979) TCGA-43-2581-01 16 49672203 49672203 G T ZNF423 Missense_Mutation p.P287Q 0.19 tolerated(0.15) probably_damaging(0.978) TCGA-43-2581-01 16 50733622 50733622 C A NOD2 Silent p.A99A 0.15 TCGA-43-2581-01 16 53341594 53341594 A T CHD9 Missense_Mutation p.D2261V 0.26 unknown(0) TCGA-43-2581-01 16 55903634 55903634 C G CES5A Missense_Mutation p.G176A 0.23 deleterious(0) probably_damaging(0.94) TCGA-43-2581-01 16 57075940 57075940 C T NLRC5 Nonsense_Mutation p.Q1026* 0.24 TCGA-43-2581-01 16 57689319 57689319 G T GPR56 Missense_Mutation p.Q259H 0.17 tolerated(0.11) benign(0.009) TCGA-43-2581-01 16 602651 602651 G T CAPN15 Silent p.P928P 0.36 TCGA-43-2581-01 16 67683410 67683410 C A RLTPR Silent p.R603R 0.21 TCGA-43-2581-01 16 67912295 67912295 G T EDC4 Missense_Mutation p.R346L 0.15 deleterious(0) possibly_damaging(0.676) TCGA-43-2581-01 16 68386306 68386306 G T PRMT7 Missense_Mutation p.E523D 0.21 deleterious(0.05) benign(0.126) TCGA-43-2581-01 16 68406030 68406030 C A SMPD3 Missense_Mutation p.V19L 0.30 tolerated(1) benign(0.003) TCGA-43-2581-01 16 70301604 70301604 C A AARS Missense_Mutation p.D394Y 0.17 deleterious(0.01) probably_damaging(0.942) TCGA-43-2581-01 16 71096096 71096096 G C HYDIN Missense_Mutation p.I784M 0.20 possibly_damaging(0.66) TCGA-43-2581-01 16 71512791 71512791 T A ZNF19 Missense_Mutation p.T51S 0.15 deleterious(0.02) possibly_damaging(0.78) TCGA-43-2581-01 16 72993233 72993233 C A ZFHX3 Missense_Mutation p.G271V 0.21 probably_damaging(0.994) TCGA-43-2581-01 16 77769815 77769815 C A NUDT7 Missense_Mutation p.Q94K 0.17 tolerated(0.48) benign(0.17) TCGA-43-2581-01 16 77775534 77775534 A G NUDT7 Missense_Mutation p.Q135R 0.17 tolerated(0.35) benign(0.029) TCGA-43-2581-01 16 77775535 77775535 G C NUDT7 Missense_Mutation p.Q135H 0.17 tolerated(0.14) benign(0.117) TCGA-43-2581-01 16 85952067 85952067 G T IRF8 Missense_Mutation p.V216L 0.12 deleterious(0.05) benign(0.089) TCGA-43-2581-01 16 87723355 87723355 G C JPH3 Missense_Mutation p.K463N 0.18 tolerated(0.11) benign(0.028) TCGA-43-2581-01 16 89592809 89592809 G T SPG7 Missense_Mutation p.D231Y 0.26 deleterious(0) probably_damaging(0.987) TCGA-43-2581-01 17 10543698 10543698 C A MYH3 Missense_Mutation p.C793F 0.27 deleterious(0.03) benign(0.206) TCGA-43-2581-01 17 16062141 16062141 G A NCOR1 Missense_Mutation p.P222L 0.23 probably_damaging(0.999) TCGA-43-2581-01 17 18251640 18251640 T C SHMT1 Silent p.S119S 0.30 TCGA-43-2581-01 17 18541639 18541639 G T TBC1D28 Missense_Mutation p.P125Q 0.09 deleterious(0.04) possibly_damaging(0.893) TCGA-43-2581-01 17 18541640 18541640 G T TBC1D28 Missense_Mutation p.P125T 0.09 deleterious(0.02) probably_damaging(0.995) TCGA-43-2581-01 17 18544618 18544618 G T TBC1D28 Silent p.G16G 0.09 TCGA-43-2581-01 17 20319895 20319895 G T SRP68P3 RNA 0.21 TCGA-43-2581-01 17 21319498 21319498 G - KCNJ12 Frame_Shift_Del p.G282Afs*27 0.09 TCGA-43-2581-01 17 21730982 21730982 C A UBBP4 Missense_Mutation p.P95H 0.17 tolerated(0.13) benign(0.374) TCGA-43-2581-01 17 27225479 27225479 G C DHRS13 Missense_Mutation p.P372A 0.35 tolerated_low_confidence(0.11) benign(0.079) TCGA-43-2581-01 17 33289095 33289095 A T ZNF830 Missense_Mutation p.E170D 0.35 tolerated(0.53) benign(0.054) TCGA-43-2581-01 17 33966699 33966699 G A AP2B1 Missense_Mutation p.G453R 0.33 deleterious(0) probably_damaging(1) TCGA-43-2581-01 17 39411752 39411752 G T KRTAP9-9 Missense_Mutation p.V39L 0.32 tolerated(0.3) unknown(0) TCGA-43-2581-01 17 3999905 3999905 T C ZZEF1 Missense_Mutation p.M588V 0.14 deleterious(0.01) benign(0.179) TCGA-43-2581-01 17 42148411 42148411 G T G6PC3 Missense_Mutation p.W26C 0.53 deleterious(0) probably_damaging(0.999) TCGA-43-2581-01 17 43005472 43005472 T A KIF18B Missense_Mutation p.K733M 0.37 deleterious(0.03) possibly_damaging(0.896) TCGA-43-2581-01 17 4577937 4577937 C A PELP1 Missense_Mutation p.G484W 0.19 probably_damaging(0.996) TCGA-43-2581-01 17 48608778 48608778 C A MYCBPAP Missense_Mutation p.L982I 0.28 tolerated_low_confidence(0.1) benign(0.076) TCGA-43-2581-01 17 48917671 48917671 A T WFIKKN2 Missense_Mutation p.Q341L 0.26 tolerated(0.22) benign(0.006) TCGA-43-2581-01 17 49730999 49730999 T A CA10 Intron 0.21 TCGA-43-2581-01 17 5033908 5033908 T A USP6 Silent p.A28A 0.21 TCGA-43-2581-01 17 5064895 5064895 G T USP6 Missense_Mutation p.W967C 0.14 tolerated_low_confidence(0.18) probably_damaging(0.981) TCGA-43-2581-01 17 54985916 54985916 C A TRIM25 Silent p.L202L 0.20 TCGA-43-2581-01 17 56232967 56232967 G T OR4D1 Silent p.G151G 0.20 TCGA-43-2581-01 17 57093162 57093162 T G TRIM37 Splice_Site p.X796_splice 0.25 TCGA-43-2581-01 17 61613056 61613056 G T KCNH6 Missense_Mutation p.K376N 0.28 deleterious(0) probably_damaging(0.997) TCGA-43-2581-01 17 65116711 65116711 G A HELZ Silent p.Y1216Y 0.33 TCGA-43-2581-01 17 66883495 66883495 T A ABCA8 Silent p.T1059T 0.44 TCGA-43-2581-01 17 7225027 7225027 C A NEURL4 Missense_Mutation p.G984V 0.12 tolerated(0.52) benign(0.15) TCGA-43-2581-01 17 74382561 74382561 C A SPHK1 Missense_Mutation p.L202M 0.21 deleterious(0.01) benign(0.378) TCGA-43-2581-01 17 7578271 7578271 T G TP53 Missense_Mutation p.H193P 0.18 deleterious(0) probably_damaging(1) TCGA-43-2581-01 17 76422546 76422546 G C DNAH17 Missense_Mutation p.R4326G 0.22 probably_damaging(1) TCGA-43-2581-01 17 77755584 77755584 G T CBX2 Missense_Mutation p.R91L 0.18 tolerated(0.2) possibly_damaging(0.657) TCGA-43-2581-01 18 19997540 19997540 C T CTAGE1 Missense_Mutation p.E79K 0.17 deleterious(0) possibly_damaging(0.786) TCGA-43-2581-01 18 23714031 23714031 G T PSMA8 Silent p.A34A 0.23 TCGA-43-2581-01 18 23970037 23970037 T - TAF4B 3'UTR 0.18 TCGA-43-2581-01 18 28991266 28991266 G T DSG4 Missense_Mutation p.G756V 0.20 tolerated(0.1) probably_damaging(0.954) TCGA-43-2581-01 18 29049152 29049152 A T DSG3 Silent p.P579P 0.16 TCGA-43-2581-01 18 30257226 30257226 G T KLHL14 Silent p.L552L 0.21 TCGA-43-2581-01 18 31325549 31325549 G C ASXL3 Missense_Mutation p.V1913L 0.19 benign(0.063) TCGA-43-2581-01 18 32374195 32374195 C A DTNA Missense_Mutation p.L115M 0.24 tolerated(0.27) benign(0.207) TCGA-43-2581-01 18 34092445 34092445 G C FHOD3 Silent p.L150L 0.12 TCGA-43-2581-01 18 43204733 43204733 C A SLC14A2 Missense_Mutation p.P35Q 0.16 tolerated_low_confidence(1) benign(0.003) TCGA-43-2581-01 18 43534878 43534878 G T EPG5 Missense_Mutation p.Q164K 0.16 tolerated_low_confidence(0.19) benign(0.025) TCGA-43-2581-01 18 44259925 44259925 C A ST8SIA5 3'UTR 0.28 TCGA-43-2581-01 18 44260413 44260413 G T ST8SIA5 Missense_Mutation p.N241K 0.12 probably_damaging(0.998) TCGA-43-2581-01 18 54348546 54348546 A G WDR7 Missense_Mutation p.E90G 0.21 deleterious(0) possibly_damaging(0.846) TCGA-43-2581-01 18 56939808 56939808 G C RAX Missense_Mutation p.R110G 0.20 tolerated(0.07) benign(0.131) TCGA-43-2581-01 18 57006018 57006018 C A LMAN1 Missense_Mutation p.A375S 0.15 tolerated(0.2) benign(0.002) TCGA-43-2581-01 18 61234062 61234062 C G SERPINB12 Missense_Mutation p.H346D 0.21 deleterious(0) probably_damaging(0.998) TCGA-43-2581-01 18 7016667 7016667 C A LAMA1 Missense_Mutation p.G938C 0.16 deleterious(0) probably_damaging(0.999) TCGA-43-2581-01 18 72775234 72775234 A T ZNF407 Missense_Mutation p.S1853C 0.21 deleterious(0.02) possibly_damaging(0.498) TCGA-43-2581-01 19 10169743 10169743 C A C3P1 RNA 0.18 TCGA-43-2581-01 19 13566024 13566024 G T CACNA1A Missense_Mutation p.P99H 0.18 probably_damaging(0.95) TCGA-43-2581-01 19 13991435 13991435 G T NANOS3 3'Flank 0.23 TCGA-43-2581-01 19 13991436 13991436 G T NANOS3 3'Flank 0.23 TCGA-43-2581-01 19 14730198 14730198 A T EMR3 3'UTR 0.20 TCGA-43-2581-01 19 14952104 14952104 C T OR7A10 Missense_Mutation p.D196N 0.11 tolerated_low_confidence(0.53) benign(0.032) TCGA-43-2581-01 19 15839556 15839556 C A OR10H2 Silent p.R235R 0.22 TCGA-43-2581-01 19 16687445 16687445 G A MED26 Missense_Mutation p.P399L 0.24 tolerated(0.05) benign(0.038) TCGA-43-2581-01 19 16688169 16688169 G A MED26 Missense_Mutation p.H158Y 0.20 tolerated(1) benign(0.164) TCGA-43-2581-01 19 16883965 16883965 G T NWD1 Silent p.L813L 0.23 TCGA-43-2581-01 19 17309001 17309001 A T MYO9B Silent p.A1374A 0.18 TCGA-43-2581-01 19 17641600 17641600 G T FAM129C Missense_Mutation p.C62F 0.21 tolerated(0.51) benign(0.109) TCGA-43-2581-01 19 17943500 17943500 C T JAK3 Silent p.V836V 0.21 TCGA-43-2581-01 19 18092801 18092801 G A KCNN1 Missense_Mutation p.G261E 0.24 deleterious(0) probably_damaging(0.997) TCGA-43-2581-01 19 18104310 18104310 T C KCNN1 Missense_Mutation p.V440A 0.19 tolerated(0.06) benign(0.145) TCGA-43-2581-01 19 18183014 18183015 GA - IL12RB1 Frame_Shift_Del p.S310Gfs*60 0.20 TCGA-43-2581-01 19 18561354 18561354 G A ELL Silent p.P466P 0.26 TCGA-43-2581-01 19 19345885 19345885 G T NCAN Missense_Mutation p.G1077V 0.15 deleterious(0) possibly_damaging(0.826) TCGA-43-2581-01 19 19349153 19349153 G T NCAN Missense_Mutation p.K1114N 0.13 deleterious(0) benign(0.008) TCGA-43-2581-01 19 19349154 19349154 G T NCAN Missense_Mutation p.D1115Y 0.13 deleterious(0) probably_damaging(0.987) TCGA-43-2581-01 19 19377328 19377328 C G TM6SF2 Missense_Mutation p.A299P 0.16 deleterious(0) probably_damaging(0.969) TCGA-43-2581-01 19 20308025 20308025 C G ZNF486 Nonsense_Mutation p.S169* 0.18 TCGA-43-2581-01 19 20728419 20728419 C A ZNF737 Missense_Mutation p.G197V 0.29 tolerated(0.06) probably_damaging(0.977) TCGA-43-2581-01 19 20828570 20828570 T A ZNF626 Missense_Mutation p.K49M 0.20 deleterious(0.01) possibly_damaging(0.819) TCGA-43-2581-01 19 21131883 21131883 G C ZNF85 Missense_Mutation p.C188S 0.16 tolerated(0.17) benign(0.003) TCGA-43-2581-01 19 21991603 21991603 C G ZNF43 Missense_Mutation p.K412N 0.14 tolerated(0.77) benign(0.058) TCGA-43-2581-01 19 2811728 2811728 G T THOP1 Missense_Mutation p.S635I 0.11 deleterious(0) benign(0.136) TCGA-43-2581-01 19 2852847 2852847 G T ZNF555 Missense_Mutation p.G262W 0.22 deleterious(0) probably_damaging(0.998) TCGA-43-2581-01 19 36051482 36051482 C T ATP4A Silent p.Q190Q 0.21 TCGA-43-2581-01 19 36205651 36205651 C A ZBTB32 Silent p.P41P 0.17 TCGA-43-2581-01 19 36964354 36964354 C A ZNF566 Missense_Mutation p.V6L 0.19 tolerated(0.09) benign(0.009) TCGA-43-2581-01 19 37642820 37642820 G A ZNF585A Missense_Mutation p.P606S 0.11 deleterious(0.03) probably_damaging(1) TCGA-43-2581-01 19 38948819 38948819 G T RYR1 Missense_Mutation p.W685L 0.17 probably_damaging(1) TCGA-43-2581-01 19 38964021 38964021 C A RYR1 Missense_Mutation p.S1257Y 0.15 benign(0.296) TCGA-43-2581-01 19 39760271 39760271 G T IFNL2 Silent p.R138R 0.17 TCGA-43-2581-01 19 40354044 40354044 C A FCGBP 3'UTR 0.25 TCGA-43-2581-01 19 4157078 4157078 C T CREB3L3 Silent p.S81S 0.14 TCGA-43-2581-01 19 4217075 4217075 G A ANKRD24 Missense_Mutation p.V640M 0.18 tolerated_low_confidence(0.17) benign(0.136) TCGA-43-2581-01 19 4280023 4280023 C A SHD 5'UTR 0.44 TCGA-43-2581-01 19 43433853 43433853 G T PSG7 Silent p.S150S 0.13 TCGA-43-2581-01 19 43690625 43690625 C A PSG5 5'UTR 0.14 TCGA-43-2581-01 19 43698648 43698648 G T PSG4 Missense_Mutation p.Q363K 0.11 tolerated(0.2) possibly_damaging(0.507) TCGA-43-2581-01 19 44097465 44097465 C A IRGQ Missense_Mutation p.E195D 0.22 deleterious(0.01) probably_damaging(0.995) TCGA-43-2581-01 19 44236977 44236977 C A SMG9 Intron 0.25 TCGA-43-2581-01 19 44793161 44793161 C A ZNF235 Missense_Mutation p.V143L 0.26 tolerated(0.51) benign(0) TCGA-43-2581-01 19 47279003 47279003 C A SLC1A5 Missense_Mutation p.D464Y 0.22 deleterious(0) probably_damaging(1) TCGA-43-2581-01 19 48533699 48533699 C T CABP5 3'UTR 0.26 TCGA-43-2581-01 19 50099409 50099409 G A PRR12 Missense_Mutation p.G606D 0.19 benign(0.094) TCGA-43-2581-01 19 50840355 50840355 G T NAPSB RNA 0.16 TCGA-43-2581-01 19 51133391 51133391 G T SYT3 Missense_Mutation p.L238M 0.15 tolerated(0.27) benign(0.374) TCGA-43-2581-01 19 52003406 52003406 C A SIGLEC12 Missense_Mutation p.K192N 0.16 deleterious(0.01) possibly_damaging(0.707) TCGA-43-2581-01 19 52132675 52132675 G T SIGLEC5 Silent p.T212T 0.16 TCGA-43-2581-01 19 52618660 52618660 T A ZNF616 Missense_Mutation p.Y586F 0.25 tolerated(1) benign(0.001) TCGA-43-2581-01 19 52824941 52824941 G T ZNF480 Missense_Mutation p.R146S 0.26 tolerated(0.57) probably_damaging(0.977) TCGA-43-2581-01 19 53453832 53453832 C A ZNF816 Missense_Mutation p.C399F 0.19 deleterious(0) probably_damaging(1) TCGA-43-2581-01 19 53577463 53577463 C A ZNF160 Missense_Mutation p.W67C 0.17 deleterious(0.04) possibly_damaging(0.893) TCGA-43-2581-01 19 53669103 53669103 C A ZNF665 Missense_Mutation p.A214S 0.23 tolerated(0.16) benign(0.287) TCGA-43-2581-01 19 54238187 54238187 G A MIR518D RNA 0.27 TCGA-43-2581-01 19 54395863 54395863 G T PRKCG Missense_Mutation p.V263F 0.22 deleterious(0.04) possibly_damaging(0.855) TCGA-43-2581-01 19 54761148 54761148 T G LILRB5 5'Flank 0.25 TCGA-43-2581-01 19 55341925 55341925 G T KIR3DL1 3'UTR 0.25 TCGA-43-2581-01 19 55399721 55399721 G T FCAR Intron 0.21 TCGA-43-2581-01 19 56320227 56320227 G T NLRP11 Nonsense_Mutation p.Y583* 0.20 TCGA-43-2581-01 19 56320401 56320401 C G NLRP11 Silent p.S525S 0.16 TCGA-43-2581-01 19 56423598 56423598 C T NLRP13 Missense_Mutation p.G529R 0.19 tolerated(0.05) benign(0.001) TCGA-43-2581-01 19 56423909 56423909 G T NLRP13 Missense_Mutation p.P425H 0.22 deleterious(0) probably_damaging(0.999) TCGA-43-2581-01 19 56552434 56552434 C A NLRP5 Missense_Mutation p.P978H 0.18 deleterious(0) probably_damaging(0.962) TCGA-43-2581-01 19 57642067 57642067 C T USP29 Missense_Mutation p.T675I 0.18 deleterious(0.04) possibly_damaging(0.452) TCGA-43-2581-01 19 57922744 57922744 G T ZNF17 5'UTR 0.12 TCGA-43-2581-01 19 58455396 58455396 G T ZNF256 Nonsense_Mutation p.Y22* 0.11 TCGA-43-2581-01 19 58551837 58551837 G T ZSCAN1 Silent p.S130S 0.20 TCGA-43-2581-01 19 58640594 58640594 C A ZNF329 Missense_Mutation p.A93S 0.20 tolerated(0.68) benign(0.01) TCGA-43-2581-01 19 58805485 58805485 G T ZNF8 Missense_Mutation p.S104I 0.16 tolerated(0.34) benign(0) TCGA-43-2581-01 19 58868376 58868376 C A ZNF497 Missense_Mutation p.R209L 0.21 deleterious(0.02) benign(0.102) TCGA-43-2581-01 19 6312479 6312479 G T ACER1 Missense_Mutation p.P42Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-43-2581-01 19 6713508 6713508 C - C3 Frame_Shift_Del p.K263Rfs*40 0.23 TCGA-43-2581-01 19 7166394 7166394 C A INSR Missense_Mutation p.E544D 0.22 deleterious(0.01) probably_damaging(0.944) TCGA-43-2581-01 19 7518461 7518461 G T ARHGEF18 Missense_Mutation p.R467M 0.12 deleterious(0.01) probably_damaging(0.95) TCGA-43-2581-01 19 7763624 7763624 C A FCER2 Intron 0.14 TCGA-43-2581-01 19 806485 806485 G T PTBP1 Missense_Mutation p.G350C 0.29 deleterious(0.01) possibly_damaging(0.627) TCGA-43-2581-01 19 8564512 8564512 C A PRAM1 Silent p.P60P 0.21 TCGA-43-2581-01 19 8808508 8808508 C G ACTL9 Missense_Mutation p.V182L 0.18 tolerated(0.21) probably_damaging(0.994) TCGA-43-2581-01 19 8987318 8987318 C A MUC16 Missense_Mutation p.E13923D 0.15 probably_damaging(0.956) TCGA-43-2581-01 19 9067292 9067292 G T MUC16 Silent p.I6718I 0.15 TCGA-43-2581-01 19 9070490 9070490 G T MUC16 Missense_Mutation p.S5652R 0.24 unknown(0) TCGA-43-2581-01 19 9086803 9086803 G T MUC16 Missense_Mutation p.S1671Y 0.19 unknown(0) TCGA-43-2581-01 19 9090010 9090010 T A MUC16 Missense_Mutation p.Q602L 0.27 unknown(0) TCGA-43-2581-01 19 9271897 9271897 G C ZNF317 Missense_Mutation p.G526R 0.14 deleterious(0) probably_damaging(0.999) TCGA-43-2581-01 19 9324922 9324922 C T OR7D4 Missense_Mutation p.V198I 0.22 tolerated(0.15) benign(0.008) TCGA-43-2581-01 19 9801079 9801079 C T ZNF812 Missense_Mutation p.G367E 0.17 deleterious(0.01) possibly_damaging(0.773) TCGA-43-2581-01 1 102302473 102302473 C A OLFM3 Missense_Mutation p.D60Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-43-2581-01 1 103470022 103470023 GG - COL11A1 Frame_Shift_Del p.P641Kfs*6 0.17 TCGA-43-2581-01 1 104234110 104234110 C T AMY1B Missense_Mutation p.R334K 0.12 tolerated(0.64) probably_damaging(0.992) TCGA-43-2581-01 1 107691380 107691380 G C NTNG1 Silent p.T55T 0.11 TCGA-43-2581-01 1 107691381 107691381 G T NTNG1 Missense_Mutation p.D56Y 0.11 deleterious(0.02) probably_damaging(1) TCGA-43-2581-01 1 107867166 107867166 G T NTNG1 Missense_Mutation p.R170L 0.23 deleterious(0) probably_damaging(0.928) TCGA-43-2581-01 1 109793527 109793527 A G CELSR2 Missense_Mutation p.T276A 0.35 tolerated(0.34) possibly_damaging(0.868) TCGA-43-2581-01 1 110085914 110085914 C T GPR61 Silent p.A90A 0.32 TCGA-43-2581-01 1 110151362 110151362 T A GNAT2 Missense_Mutation p.T118S 0.14 tolerated(0.75) benign(0.001) TCGA-43-2581-01 1 110170103 110170103 G A AMPD2 Missense_Mutation p.V359I 0.15 deleterious(0.01) benign(0.023) TCGA-43-2581-01 1 110921554 110921554 G T SLC16A4 Silent p.I317I 0.38 TCGA-43-2581-01 1 111773906 111773906 G C CHI3L2 Missense_Mutation p.G107R 0.18 deleterious(0.01) possibly_damaging(0.815) TCGA-43-2581-01 1 12638848 12638848 A G DHRS3 Missense_Mutation p.M199T 0.12 deleterious(0.04) benign(0.428) TCGA-43-2581-01 1 13474837 13474837 G A PRAMEF18 Missense_Mutation p.T431I 0.26 deleterious(0) benign(0.046) TCGA-43-2581-01 1 14142995 14142995 A G PRDM2 Missense_Mutation p.K1704E 0.11 unknown(0) TCGA-43-2581-01 1 145498697 145498697 G T LIX1L Missense_Mutation p.E311D 0.20 deleterious(0) probably_damaging(0.953) TCGA-43-2581-01 1 145581502 145581502 G A PIAS3 Silent p.K361K 0.19 TCGA-43-2581-01 1 147380334 147380334 C A GJA8 Missense_Mutation p.F84L 0.18 deleterious(0.01) benign(0.25) TCGA-43-2581-01 1 149369341 149369341 A T RP5-998N21.4 3'Flank 0.38 TCGA-43-2581-01 1 150325421 150325421 C A PRPF3 Missense_Mutation p.A673E 0.19 deleterious(0) probably_damaging(0.999) TCGA-43-2581-01 1 151502488 151502488 G T CGN Missense_Mutation p.R737L 0.32 deleterious(0) probably_damaging(0.999) TCGA-43-2581-01 1 152277218 152277218 G A FLG Missense_Mutation p.R3382C 0.05 unknown(0) TCGA-43-2581-01 1 152322972 152322972 C A FLG2 3'UTR 0.32 TCGA-43-2581-01 1 152322974 152322974 G A FLG2 3'UTR 0.31 TCGA-43-2581-01 1 152328871 152328871 A G FLG2 Missense_Mutation p.L464S 0.36 unknown(0) TCGA-43-2581-01 1 152552237 152552237 C A LCE3D Missense_Mutation p.R59L 0.32 tolerated_low_confidence(0.1) unknown(0) TCGA-43-2581-01 1 152648842 152648842 C A LCE2C 3'UTR 0.15 TCGA-43-2581-01 1 152733167 152733167 C T KPRP Missense_Mutation p.P368L 0.34 deleterious(0) probably_damaging(0.999) TCGA-43-2581-01 1 152733527 152733527 C A KPRP Missense_Mutation p.P488Q 0.15 deleterious(0.01) probably_damaging(0.985) TCGA-43-2581-01 1 153043128 153043128 C A SPRR2B Missense_Mutation p.C63F 0.13 deleterious_low_confidence(0) unknown(0) TCGA-43-2581-01 1 153915606 153915606 C A DENND4B Silent p.G106G 0.34 TCGA-43-2581-01 1 154310209 154310209 G A ATP8B2 Intron 0.14 TCGA-43-2581-01 1 154832276 154832276 C T KCNN3 Intron 0.43 TCGA-43-2581-01 1 155029764 155029764 C G ADAM15 Missense_Mutation p.L417V 0.21 tolerated(0.42) possibly_damaging(0.665) TCGA-43-2581-01 1 156642953 156642953 G A NES Missense_Mutation p.R343C 0.19 deleterious(0) possibly_damaging(0.874) TCGA-43-2581-01 1 156816460 156816460 C A INSRR Missense_Mutation p.R554L 0.14 tolerated(0.11) benign(0.016) TCGA-43-2581-01 1 15764975 15764975 T A CTRC Silent p.T5T 0.16 TCGA-43-2581-01 1 158669760 158669760 C A OR6K2 Missense_Mutation p.R228L 0.21 deleterious(0.01) possibly_damaging(0.644) TCGA-43-2581-01 1 159038356 159038356 A G AIM2 Splice_Site p.X132_splice 0.19 TCGA-43-2581-01 1 159166741 159166741 G T CADM3 Missense_Mutation p.E315D 0.16 tolerated(0.34) benign(0.001) TCGA-43-2581-01 1 159175341 159175341 G T DARC Missense_Mutation p.D40Y 0.31 tolerated(0.69) possibly_damaging(0.542) TCGA-43-2581-01 1 159409974 159409974 A T OR10J1 Missense_Mutation p.R142S 0.07 deleterious(0) probably_damaging(0.948) TCGA-43-2581-01 1 159778908 159778908 G T FCRL6 Missense_Mutation p.R159S 0.15 tolerated(0.51) possibly_damaging(0.696) TCGA-43-2581-01 1 160313209 160313209 C T NCSTN Missense_Mutation p.S8F 0.15 tolerated_low_confidence(0.72) benign(0) TCGA-43-2581-01 1 161017590 161017590 T A ARHGAP30 Missense_Mutation p.Q1074L 0.31 deleterious_low_confidence(0.04) benign(0.01) TCGA-43-2581-01 1 161183897 161183897 C A NDUFS2 Intron 0.06 TCGA-43-2581-01 1 161771915 161771915 A C ATF6 Silent p.P254P 0.17 TCGA-43-2581-01 1 162366875 162366875 C T SH2D1B 3'UTR 0.46 TCGA-43-2581-01 1 162381888 162381888 G T SH2D1B 5'UTR 0.18 TCGA-43-2581-01 1 162824552 162824552 C A C1orf110 3'UTR 0.18 TCGA-43-2581-01 1 166926061 166926061 C T ILDR2 Missense_Mutation p.M136I 0.34 tolerated(0.38) benign(0.03) TCGA-43-2581-01 1 166990978 166990978 A G MAEL Silent p.L397L 0.37 TCGA-43-2581-01 1 168260462 168260462 C G TBX19 Missense_Mutation p.L90V 0.16 deleterious(0.03) probably_damaging(0.998) TCGA-43-2581-01 1 169563953 169563953 G T SELP Nonsense_Mutation p.S755* 0.36 TCGA-43-2581-01 1 171227228 171227228 T A FMO1 Translation_Start_Site p.M1? 0.23 deleterious(0) probably_damaging(0.993) TCGA-43-2581-01 1 171227229 171227229 G T FMO1 Translation_Start_Site p.M1? 0.23 deleterious(0) probably_damaging(0.985) TCGA-43-2581-01 1 173628544 173628544 C A ANKRD45 Missense_Mutation p.G5V 0.29 deleterious_low_confidence(0.02) unknown(0) TCGA-43-2581-01 1 17413096 17413096 C A PADI2 Missense_Mutation p.V252L 0.14 deleterious(0.02) probably_damaging(1) TCGA-43-2581-01 1 175306792 175306792 G T TNR Missense_Mutation p.Q1136K 0.09 tolerated(0.34) probably_damaging(0.91) TCGA-43-2581-01 1 175335036 175335036 C A TNR Missense_Mutation p.L764F 0.15 tolerated(0.06) benign(0.002) TCGA-43-2581-01 1 176664921 176664921 G T PAPPA2 Missense_Mutation p.R891L 0.35 tolerated(0.76) benign(0.324) TCGA-43-2581-01 1 176918407 176918407 G T ASTN1 Missense_Mutation p.F656L 0.17 deleterious(0.02) probably_damaging(0.914) TCGA-43-2581-01 1 178491540 178491541 - T TEX35 Frame_Shift_Ins p.P224Afs*8 0.21 TCGA-43-2581-01 1 178491583 178491583 C A TEX35 3'UTR 0.24 TCGA-43-2581-01 1 179086473 179086473 C T ABL2 Missense_Mutation p.V468I 0.30 deleterious(0.01) possibly_damaging(0.871) TCGA-43-2581-01 1 181767704 181767704 C A CACNA1E Missense_Mutation p.R2226S 0.31 deleterious(0.04) benign(0.004) TCGA-43-2581-01 1 183273967 183273967 T A NMNAT2 Intron 0.33 TCGA-43-2581-01 1 185958696 185958696 G C HMCN1 Missense_Mutation p.G1042A 0.12 possibly_damaging(0.688) TCGA-43-2581-01 1 18661415 18661415 G T IGSF21 Missense_Mutation p.G112V 0.09 deleterious(0) probably_damaging(1) TCGA-43-2581-01 1 1920389 1920389 C T C1orf222 Missense_Mutation p.E22K 0.14 tolerated(0.06) unknown(0) TCGA-43-2581-01 1 196227490 196227490 C G KCNT2 Missense_Mutation p.M1015I 0.13 tolerated_low_confidence(0.06) possibly_damaging(0.548) TCGA-43-2581-01 1 196928244 196928244 C T CFHR2 3'UTR 0.22 TCGA-43-2581-01 1 201193995 201193995 G C IGFN1 Missense_Mutation p.R3493S 0.21 benign(0.316) TCGA-43-2581-01 1 201282572 201282572 C A PKP1 Silent p.A195A 0.28 TCGA-43-2581-01 1 204985433 204985433 C A NFASC Intron 0.23 TCGA-43-2581-01 1 208224694 208224694 C G PLXNA2 Missense_Mutation p.S1023T 0.31 tolerated(0.44) benign(0.187) TCGA-43-2581-01 1 209789946 209789946 C G LAMB3 Missense_Mutation p.K1084N 0.17 tolerated(0.07) possibly_damaging(0.774) TCGA-43-2581-01 1 209789950 209789950 T G LAMB3 Missense_Mutation p.Q1083P 0.16 deleterious(0.04) benign(0.002) TCGA-43-2581-01 1 220284272 220284272 C T IARS2 Missense_Mutation p.A491V 0.07 tolerated(0.16) benign(0.056) TCGA-43-2581-01 1 221875653 221875653 C - DUSP10 3'UTR 0.28 TCGA-43-2581-01 1 22834523 22834523 G T ZBTB40 Nonsense_Mutation p.E464* 0.09 TCGA-43-2581-01 1 228548134 228548134 T A OBSCN Intron 0.13 TCGA-43-2581-01 1 229667383 229667383 C G ABCB10 Missense_Mutation p.E479Q 0.11 tolerated(0.21) benign(0.173) TCGA-43-2581-01 1 230415296 230415296 G - GALNT2 3'UTR 0.42 TCGA-43-2581-01 1 230846534 230846534 G T AGT Silent p.I21I 0.16 TCGA-43-2581-01 1 23236984 23236984 C T EPHB2 Missense_Mutation p.P872L 0.16 deleterious(0) probably_damaging(1) TCGA-43-2581-01 1 236755333 236755333 T C HEATR1 Missense_Mutation p.H461R 0.15 deleterious(0.03) possibly_damaging(0.889) TCGA-43-2581-01 1 237001809 237001809 G T MTR Missense_Mutation p.K475N 0.36 deleterious(0) probably_damaging(1) TCGA-43-2581-01 1 237875060 237875060 G T RYR2 Nonsense_Mutation p.E3416* 0.24 TCGA-43-2581-01 1 237947412 237947412 G T RYR2 Missense_Mutation p.G4134C 0.38 probably_damaging(1) TCGA-43-2581-01 1 238050799 238050799 G T ZP4 Missense_Mutation p.P206T 0.33 deleterious(0) probably_damaging(0.985) TCGA-43-2581-01 1 241731810 241731810 G T KMO Missense_Mutation p.V274L 0.33 tolerated(0.35) benign(0.008) TCGA-43-2581-01 1 241946624 241946624 A T WDR64 Missense_Mutation p.Q872H 0.36 tolerated(0.12) benign(0.026) TCGA-43-2581-01 1 243349338 243349338 G C CEP170 Missense_Mutation p.P437A 0.18 deleterious(0.02) benign(0.066) TCGA-43-2581-01 1 245775267 245775267 G T KIF26B Missense_Mutation p.G696V 0.28 deleterious(0) unknown(0) TCGA-43-2581-01 1 247486494 247486494 G A ZNF496 Missense_Mutation p.R205W 0.31 deleterious(0.03) probably_damaging(0.924) TCGA-43-2581-01 1 248028137 248028137 G T TRIM58 Missense_Mutation p.R216L 0.34 deleterious(0.01) possibly_damaging(0.621) TCGA-43-2581-01 1 248028138 248028138 G T TRIM58 Silent p.R216R 0.33 TCGA-43-2581-01 1 248059644 248059644 T C OR2W3 Silent p.Y252Y 0.34 TCGA-43-2581-01 1 248262720 248262720 G T OR2L13 Missense_Mutation p.G15C 0.15 deleterious(0) probably_damaging(1) TCGA-43-2581-01 1 248402642 248402642 C G OR2M4 Missense_Mutation p.P138A 0.29 tolerated(0.52) benign(0.045) TCGA-43-2581-01 1 248402962 248402962 C A OR2M4 Missense_Mutation p.H244Q 0.40 deleterious(0.02) possibly_damaging(0.718) TCGA-43-2581-01 1 248551413 248551413 C A OR2T6 Missense_Mutation p.F168L 0.28 deleterious(0) possibly_damaging(0.872) TCGA-43-2581-01 1 248551421 248551421 C A OR2T6 Missense_Mutation p.S171Y 0.18 deleterious(0) probably_damaging(0.992) TCGA-43-2581-01 1 248616108 248616108 G C OR2T2 Missense_Mutation p.E4Q 0.09 tolerated(0.08) benign(0.154) TCGA-43-2581-01 1 248616192 248616192 G T OR2T2 Missense_Mutation p.V32F 0.12 deleterious(0.05) possibly_damaging(0.459) TCGA-43-2581-01 1 248652066 248652066 C T OR2T5 Silent p.L59L 0.16 TCGA-43-2581-01 1 26371652 26371652 G T SLC30A2 Missense_Mutation p.P36H 0.11 deleterious(0.02) benign(0.059) TCGA-43-2581-01 1 27687250 27687250 T C MAP3K6 Missense_Mutation p.D667G 0.33 deleterious(0.01) possibly_damaging(0.82) TCGA-43-2581-01 1 28477083 28477083 G T PTAFR Silent p.S150S 0.22 TCGA-43-2581-01 1 33138126 33138126 A T RBBP4 Missense_Mutation p.S348C 0.24 deleterious(0) possibly_damaging(0.841) TCGA-43-2581-01 1 33248105 33248105 T A YARS Missense_Mutation p.E314D 0.16 tolerated(0.36) possibly_damaging(0.813) TCGA-43-2581-01 1 3328709 3328709 G - PRDM16 Frame_Shift_Del p.G651Afs*33 0.13 TCGA-43-2581-01 1 35852694 35852694 G T ZMYM4 Missense_Mutation p.V643L 0.23 tolerated(0.47) benign(0.066) TCGA-43-2581-01 1 36904372 36904372 C A OSCP1 Missense_Mutation p.Q84H 0.15 tolerated(0.09) possibly_damaging(0.879) TCGA-43-2581-01 1 38227468 38227468 G T EPHA10 Missense_Mutation p.D153E 0.13 deleterious(0) possibly_damaging(0.721) TCGA-43-2581-01 1 47489602 47489602 G T CYP4X1 Missense_Mutation p.R38L 0.11 tolerated(0.82) possibly_damaging(0.716) TCGA-43-2581-01 1 47748108 47748108 C T STIL Missense_Mutation p.G386E 0.13 deleterious(0.02) benign(0.275) TCGA-43-2581-01 1 6142265 6142265 A T KCNAB2 Missense_Mutation p.Q104L 0.10 deleterious(0.04) benign(0.003) TCGA-43-2581-01 1 65113496 65113496 G T CACHD1 Missense_Mutation p.G339V 0.29 tolerated(0.45) benign(0.039) TCGA-43-2581-01 1 67303453 67303453 G A WDR78 Silent p.H507H 0.14 TCGA-43-2581-01 1 70761844 70761844 T A ANKRD13C Missense_Mutation p.Q341L 0.10 deleterious(0.01) probably_damaging(0.925) TCGA-43-2581-01 1 75037013 75037013 T A C1orf173 Missense_Mutation p.S1461C 0.25 tolerated(0.11) benign(0.011) TCGA-43-2581-01 1 75038579 75038579 C G C1orf173 Missense_Mutation p.V939L 0.24 tolerated(0.18) benign(0.013) TCGA-43-2581-01 1 75608928 75608928 C T LHX8 Missense_Mutation p.S172F 0.10 deleterious(0) probably_damaging(0.99) TCGA-43-2581-01 1 77516036 77516036 C A ST6GALNAC5 Silent p.P255P 0.22 TCGA-43-2581-01 1 79356756 79356756 G T ELTD1 3'UTR 0.33 TCGA-43-2581-01 1 85116142 85116142 C A SSX2IP Missense_Mutation p.G525W 0.10 deleterious(0.04) benign(0.001) TCGA-43-2581-01 1 85279638 85279638 C G LPAR3 Missense_Mutation p.R318T 0.11 deleterious(0.05) benign(0.021) TCGA-43-2581-01 1 86515818 86515818 C A COL24A1 Nonsense_Mutation p.E632* 0.09 TCGA-43-2581-01 1 89616022 89616022 T G GBP7 Missense_Mutation p.T288P 0.22 deleterious(0.01) benign(0.429) TCGA-43-2581-01 1 89616023 89616023 G T GBP7 Silent p.V287V 0.22 TCGA-43-2581-01 1 89732273 89732273 T A GBP5 Splice_Site p.X209_splice 0.20 TCGA-43-2581-01 1 89844145 89844145 C A GBP6 Missense_Mutation p.L200M 0.17 deleterious(0) probably_damaging(0.998) TCGA-43-2581-01 1 92946572 92946572 C T GFI1 Nonsense_Mutation p.W124* 0.14 TCGA-43-2581-01 1 94485162 94485162 C A ABCA4 Missense_Mutation p.W1724C 0.17 deleterious(0) probably_damaging(0.988) TCGA-43-2581-01 1 94544149 94544149 G T ABCA4 Silent p.I451I 0.22 TCGA-43-2581-01 20 10030161 10030161 G T ANKEF1 Missense_Mutation p.R315M 0.19 deleterious(0) possibly_damaging(0.526) TCGA-43-2581-01 20 13971172 13971172 G T SEL1L2 Silent p.P3P 0.11 TCGA-43-2581-01 20 21376441 21376441 G A NKX2-4 3'UTR 0.15 TCGA-43-2581-01 20 21376442 21376442 C A NKX2-4 3'UTR 0.14 TCGA-43-2581-01 20 21494284 21494284 C G NKX2-2 Silent p.T8T 0.11 TCGA-43-2581-01 20 2378587 2378587 C T TGM6 Silent p.I189I 0.21 TCGA-43-2581-01 20 24565545 24565545 G T SYNDIG1 Silent p.P178P 0.17 TCGA-43-2581-01 20 2796440 2796440 C A C20orf141 3'UTR 0.13 TCGA-43-2581-01 20 30226900 30226900 C A COX4I2 Missense_Mutation p.T27N 0.23 tolerated(0.2) benign(0.002) TCGA-43-2581-01 20 30414743 30414743 T A MYLK2 Splice_Site p.X408_splice 0.19 TCGA-43-2581-01 20 30816186 30816186 G T POFUT1 Silent p.T221T 0.17 TCGA-43-2581-01 20 33297148 33297148 G A TP53INP2 Missense_Mutation p.C78Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-43-2581-01 20 3804563 3804563 G T AP5S1 Silent p.R74R 0.19 TCGA-43-2581-01 20 42694440 42694440 C T TOX2 Missense_Mutation p.P350L 0.20 deleterious(0) possibly_damaging(0.656) TCGA-43-2581-01 20 42695413 42695413 G T TOX2 Missense_Mutation p.C467F 0.23 tolerated(0.05) benign(0.099) TCGA-43-2581-01 20 43933001 43933001 C A MATN4 Silent p.A170A 0.24 TCGA-43-2581-01 20 44664043 44664043 G T SLC12A5 Nonsense_Mutation p.E73* 0.19 TCGA-43-2581-01 20 50052242 50052242 C A NFATC2 Splice_Site p.X635_splice 0.10 TCGA-43-2581-01 20 55206876 55206876 C T TFAP2C Missense_Mutation p.H184Y 0.24 tolerated(0.19) benign(0.322) TCGA-43-2581-01 20 56098241 56098241 C T CTCFL Missense_Mutation p.D213N 0.22 tolerated(0.06) benign(0.28) TCGA-43-2581-01 20 57767501 57767501 C A ZNF831 Missense_Mutation p.P476H 0.18 deleterious(0) probably_damaging(0.921) TCGA-43-2581-01 20 5935797 5935797 C T MCM8 Missense_Mutation p.T129I 0.17 tolerated(0.47) benign(0.001) TCGA-43-2581-01 20 60774190 60774190 G T MTG2 Missense_Mutation p.A235S 0.19 deleterious(0) possibly_damaging(0.803) TCGA-43-2581-01 20 61039930 61039930 G T GATA5 Missense_Mutation p.L386M 0.11 deleterious(0.04) probably_damaging(0.998) TCGA-43-2581-01 20 61340682 61340682 C A NTSR1 Missense_Mutation p.N41K 0.20 tolerated(0.07) benign(0.436) TCGA-43-2581-01 20 61513236 61513236 G C DIDO1 Missense_Mutation p.P1358A 0.16 probably_damaging(0.998) TCGA-43-2581-01 20 61981781 61981781 G C CHRNA4 Missense_Mutation p.L328V 0.18 deleterious(0) probably_damaging(0.997) TCGA-43-2581-01 20 76969 76969 A C DEFB125 Missense_Mutation p.T128P 0.20 tolerated(0.2) possibly_damaging(0.86) TCGA-43-2581-01 21 11015001 11015001 C G TPTE RNA 0.14 TCGA-43-2581-01 21 15588573 15588573 G A RBM11 Silent p.R22R 0.18 TCGA-43-2581-01 21 27840832 27840832 G C CYYR1 Missense_Mutation p.N151K 0.14 tolerated_low_confidence(0.22) probably_damaging(0.99) TCGA-43-2581-01 21 28210528 28210528 C G ADAMTS1 Missense_Mutation p.Q758H 0.21 tolerated(0.83) benign(0.004) TCGA-43-2581-01 21 28337865 28337865 C A ADAMTS5 Missense_Mutation p.L282F 0.28 tolerated(1) benign(0.026) TCGA-43-2581-01 21 31744370 31744370 C A KRTAP13-2 Missense_Mutation p.R54S 0.17 tolerated(1) benign(0.003) TCGA-43-2581-01 21 32253374 32253374 G C KRTAP11-1 Missense_Mutation p.S157C 0.15 deleterious(0) probably_damaging(0.993) TCGA-43-2581-01 21 40652110 40652110 C A BRWD1 Missense_Mutation p.C299F 0.10 deleterious(0) probably_damaging(0.996) TCGA-43-2581-01 21 45948439 45948439 G C TSPEAR Missense_Mutation p.P273R 0.25 tolerated(0.37) benign(0.023) TCGA-43-2581-01 21 45953737 45953737 G T TSPEAR Missense_Mutation p.P125T 0.19 tolerated(0.42) benign(0.035) TCGA-43-2581-01 21 46596499 46596499 G A ADARB1 Missense_Mutation p.A295T 0.23 tolerated(0.32) benign(0.001) TCGA-43-2581-01 21 46603327 46603327 G T ADARB1 Missense_Mutation p.G433V 0.22 deleterious(0.02) possibly_damaging(0.801) TCGA-43-2581-01 21 46640871 46640871 G A ADARB1 Missense_Mutation p.R663H 0.26 tolerated(0.1) probably_damaging(0.971) TCGA-43-2581-01 22 17072303 17072303 C T CCT8L2 Missense_Mutation p.A380T 0.12 deleterious(0.02) possibly_damaging(0.735) TCGA-43-2581-01 22 20760056 20760056 G T ZNF74 Nonsense_Mutation p.E245* 0.33 TCGA-43-2581-01 22 25753295 25753295 C G LRP5L Missense_Mutation p.W122S 0.29 deleterious(0) probably_damaging(1) TCGA-43-2581-01 22 30200765 30200765 C A ASCC2 Silent p.G405G 0.28 TCGA-43-2581-01 22 37524149 37524149 G T IL2RB Missense_Mutation p.T548N 0.23 deleterious(0) benign(0.353) TCGA-43-2581-01 22 37524845 37524845 C T IL2RB Missense_Mutation p.G316D 0.28 tolerated(0.15) benign(0.193) TCGA-43-2581-01 22 50319131 50319131 C T CRELD2 Missense_Mutation p.P361L 0.23 deleterious(0.03) possibly_damaging(0.589) TCGA-43-2581-01 2 101654982 101654982 A G TBC1D8 Silent p.L391L 0.08 TCGA-43-2581-01 2 102456399 102456399 G C MAP4K4 Missense_Mutation p.V298L 0.17 deleterious_low_confidence(0.04) unknown(0) TCGA-43-2581-01 2 107423385 107423385 T A ST6GAL2 Missense_Mutation p.M447L 0.21 benign(0.014) TCGA-43-2581-01 2 109003811 109003811 G A SULT1C4 Missense_Mutation p.A278T 0.17 deleterious(0.03) possibly_damaging(0.487) TCGA-43-2581-01 2 113780150 113780150 A G IL36B 3'UTR 0.19 TCGA-43-2581-01 2 113992991 113992991 G A PAX8 Missense_Mutation p.T356M 0.22 deleterious(0.02) possibly_damaging(0.782) TCGA-43-2581-01 2 119738995 119738995 G T MARCO Silent p.G259G 0.13 TCGA-43-2581-01 2 128366303 128366303 C A MYO7B Silent p.A888A 0.33 TCGA-43-2581-01 2 128415038 128415038 T A LIMS2 Missense_Mutation p.H61L 0.14 deleterious(0) probably_damaging(0.997) TCGA-43-2581-01 2 135926481 135926481 A G RAB3GAP1 3'UTR 0.21 TCGA-43-2581-01 2 137872852 137872852 G C THSD7B Missense_Mutation p.R453T 0.25 tolerated(0.2) benign(0.234) TCGA-43-2581-01 2 141027831 141027831 C A LRP1B Missense_Mutation p.E4409D 0.28 benign(0.217) TCGA-43-2581-01 2 141079599 141079599 C A LRP1B Silent p.G4191G 0.23 TCGA-43-2581-01 2 141607899 141607899 C T LRP1B Splice_Site p.X1571_splice 0.35 TCGA-43-2581-01 2 141641537 141641537 G T LRP1B Missense_Mutation p.L1340M 0.19 benign(0.022) TCGA-43-2581-01 2 141777631 141777631 T A LRP1B Silent p.G610G 0.21 TCGA-43-2581-01 2 153616431 153616431 A C ARL6IP6 3'UTR 0.11 TCGA-43-2581-01 2 155102351 155102351 A T GALNT13 Missense_Mutation p.D238V 0.22 deleterious(0) probably_damaging(0.979) TCGA-43-2581-01 2 164466809 164466809 C A FIGN Silent p.A511A 0.23 TCGA-43-2581-01 2 167760128 167760128 C A XIRP2 Missense_Mutation p.P46T 0.17 benign(0.024) TCGA-43-2581-01 2 168099456 168099456 C T XIRP2 Silent p.I518I 0.18 TCGA-43-2581-01 2 168107361 168107361 C A XIRP2 Silent p.P3153P 0.24 TCGA-43-2581-01 2 168107812 168107812 C A XIRP2 Missense_Mutation p.R3304S 0.18 benign(0.198) TCGA-43-2581-01 2 169757856 169757856 C A G6PC2 Missense_Mutation p.H5Q 0.21 tolerated(0.07) probably_damaging(0.961) TCGA-43-2581-01 2 17830695 17830695 G C VSNL1 Missense_Mutation p.A61P 0.21 tolerated(1) possibly_damaging(0.844) TCGA-43-2581-01 2 179516669 179516669 G T TTN Silent p.A13107A 0.09 TCGA-43-2581-01 2 179576838 179576838 T C TTN Missense_Mutation p.K9240R 0.09 TCGA-43-2581-01 2 179584126 179584126 G T TTN Silent p.I7997I 0.27 TCGA-43-2581-01 2 179616389 179616389 A C TTN Intron 0.18 TCGA-43-2581-01 2 179636127 179636127 C A TTN Missense_Mutation p.V2643F 0.09 TCGA-43-2581-01 2 180308014 180308014 C A ZNF385B Missense_Mutation p.R460L 0.16 deleterious(0) probably_damaging(0.998) TCGA-43-2581-01 2 183790256 183790256 C G NCKAP1 3'UTR 0.23 TCGA-43-2581-01 2 186671053 186671053 T G FSIP2 Missense_Mutation p.Y5763D 0.26 benign(0.016) TCGA-43-2581-01 2 186697895 186697895 C A FSIP2 Missense_Mutation p.S6978Y 0.21 probably_damaging(0.997) TCGA-43-2581-01 2 196825595 196825595 T C DNAH7 Silent p.Q760Q 0.23 TCGA-43-2581-01 2 198622075 198622075 A T BOLL Splice_Site p.X212_splice 0.21 TCGA-43-2581-01 2 201807409 201807409 C A ORC2 Missense_Mutation p.K140N 0.19 tolerated(0.08) possibly_damaging(0.855) TCGA-43-2581-01 2 20886822 20886822 C A C2orf43 Missense_Mutation p.W273C 0.12 deleterious(0) probably_damaging(1) TCGA-43-2581-01 2 209169661 209169661 G T PIKFYVE Missense_Mutation p.E520D 0.27 tolerated(0.12) possibly_damaging(0.868) TCGA-43-2581-01 2 21225625 21225625 C T APOB Silent p.E4223E 0.19 TCGA-43-2581-01 2 21251236 21251236 C A APOB Missense_Mutation p.A598S 0.14 possibly_damaging(0.861) TCGA-43-2581-01 2 212589912 212589912 C A ERBB4 Missense_Mutation p.R210S 0.30 tolerated(0.08) benign(0.015) TCGA-43-2581-01 2 217142459 217142459 C A MARCH4 Missense_Mutation p.Q267H 0.21 deleterious(0) probably_damaging(0.969) TCGA-43-2581-01 2 217366154 217366154 C T RPL37A 3'UTR 0.17 TCGA-43-2581-01 2 219612843 219612843 G C TTLL4 Missense_Mutation p.M798I 0.24 deleterious(0.04) benign(0.026) TCGA-43-2581-01 2 219825324 219825324 C T CDK5R2 Missense_Mutation p.A261V 0.28 tolerated(0.42) possibly_damaging(0.675) TCGA-43-2581-01 2 220026666 220026666 C G SLC23A3 Missense_Mutation p.E608Q 0.26 tolerated_low_confidence(0.54) benign(0.003) TCGA-43-2581-01 2 220500201 220500201 A T SLC4A3 Missense_Mutation p.Y679F 0.22 tolerated(0.7) benign(0.036) TCGA-43-2581-01 2 220502502 220502502 A C SLC4A3 Missense_Mutation p.K939T 0.08 deleterious(0) probably_damaging(0.999) TCGA-43-2581-01 2 228563979 228563979 T C SLC19A3 Missense_Mutation p.Y151C 0.14 deleterious(0.01) benign(0.179) TCGA-43-2581-01 2 231775394 231775394 G T GPR55 Missense_Mutation p.T95N 0.16 deleterious(0.03) benign(0.285) TCGA-43-2581-01 2 238728875 238728875 G A RBM44 Silent p.K599K 0.14 TCGA-43-2581-01 2 238742731 238742731 G T RBM44 Missense_Mutation p.R994L 0.52 deleterious(0.02) probably_damaging(0.925) TCGA-43-2581-01 2 25966820 25966820 C A ASXL2 Missense_Mutation p.A796S 0.19 tolerated_low_confidence(0.3) benign(0.282) TCGA-43-2581-01 2 26533714 26533714 G C GPR113 Missense_Mutation p.P961R 0.23 tolerated(0.32) benign(0.037) TCGA-43-2581-01 2 26684617 26684617 C A OTOF Missense_Mutation p.R1827L 0.15 tolerated(0.33) probably_damaging(1) TCGA-43-2581-01 2 27360929 27360929 G A C2orf53 Missense_Mutation p.S90F 0.12 tolerated(0.18) benign(0.003) TCGA-43-2581-01 2 29092625 29092625 C A TRMT61B Missense_Mutation p.R173S 0.15 tolerated(0.09) benign(0.095) TCGA-43-2581-01 2 29416633 29416633 G T ALK Silent p.A1440A 0.16 TCGA-43-2581-01 2 3196338 3196338 C A TSSC1 Missense_Mutation p.R279L 0.16 deleterious(0.01) probably_damaging(0.982) TCGA-43-2581-01 2 33246085 33246085 C A LTBP1 Missense_Mutation p.D225E 0.18 tolerated(0.41) benign(0.002) TCGA-43-2581-01 2 33952464 33952464 C T AC009499.1 Intron 0.14 TCGA-43-2581-01 2 39944390 39944390 G T TMEM178A Nonstop_Mutation p.*298Lext*43 0.13 TCGA-43-2581-01 2 50280681 50280681 C G NRXN1 Missense_Mutation p.G1326R 0.23 deleterious(0) probably_damaging(0.957) TCGA-43-2581-01 2 51254745 51254745 C A NRXN1 Missense_Mutation p.G223C 0.56 tolerated(0.12) benign(0.023) TCGA-43-2581-01 2 51255013 51255013 C A NRXN1 Silent p.V133V 0.40 TCGA-43-2581-01 2 54873420 54873420 C T SPTBN1 Silent p.L1558L 0.08 TCGA-43-2581-01 2 55771494 55771494 G A CCDC104 Missense_Mutation p.G306R 0.13 tolerated(0.58) benign(0.004) TCGA-43-2581-01 2 61575057 61575057 T A USP34 Missense_Mutation p.I745F 0.25 deleterious(0) possibly_damaging(0.643) TCGA-43-2581-01 2 63831845 63831845 G - MDH1 Frame_Shift_Del p.G190Vfs*2 0.14 TCGA-43-2581-01 2 64176297 64176297 C A VPS54 Silent p.R337R 0.19 TCGA-43-2581-01 2 70043261 70043261 G T ANXA4 Missense_Mutation p.W188L 0.26 tolerated(0.39) benign(0.202) TCGA-43-2581-01 2 70188436 70188436 A T ASPRV1 Missense_Mutation p.W129R 0.26 deleterious(0) probably_damaging(0.999) TCGA-43-2581-01 2 79255026 79255026 C A REG3G Missense_Mutation p.P143T 0.13 tolerated(0.3) benign(0.157) TCGA-43-2581-01 2 80136852 80136852 G A CTNNA2 Missense_Mutation p.E329K 0.10 tolerated(0.09) benign(0.103) TCGA-43-2581-01 2 86014023 86014023 G T ATOH8 3'UTR 0.32 TCGA-43-2581-01 2 86279957 86279957 T A POLR1A Missense_Mutation p.Y792F 0.25 tolerated(0.13) possibly_damaging(0.46) TCGA-43-2581-01 2 88390582 88390582 G T SMYD1 Missense_Mutation p.G194C 0.18 deleterious(0) probably_damaging(0.999) TCGA-43-2581-01 2 8890425 8890425 C G KIDINS220 Silent p.L1077L 0.24 TCGA-43-2581-01 2 89416949 89416949 C A IGKV1-17 Missense_Mutation p.G79W 0.26 deleterious(0.02) possibly_damaging(0.839) TCGA-43-2581-01 2 9508639 9508639 G T ASAP2 Missense_Mutation p.G516V 0.18 tolerated(0.11) benign(0.25) TCGA-43-2581-01 2 95537417 95537417 C A TEKT4 Silent p.T31T 0.22 TCGA-43-2581-01 2 95542383 95542383 C A TEKT4 Missense_Mutation p.L393I 0.23 deleterious(0) probably_damaging(0.996) TCGA-43-2581-01 2 95843283 95843283 G T ZNF2 Missense_Mutation p.R30L 0.23 tolerated(0.32) benign(0.002) TCGA-43-2581-01 2 96780560 96780560 G T ADRA2B Silent p.T443T 0.21 TCGA-43-2581-01 2 97007303 97007303 C G NCAPH Intron 0.14 TCGA-43-2581-01 2 98986518 98986518 G A CNGA3 Missense_Mutation p.R27H 0.13 tolerated_low_confidence(0.27) benign(0.001) TCGA-43-2581-01 3 100328731 100328731 G T GPR128 Missense_Mutation p.V11L 0.18 tolerated(0.16) benign(0.004) TCGA-43-2581-01 3 100994525 100994525 C A IMPG2 Missense_Mutation p.L216F 0.20 tolerated(0.6) benign(0.016) TCGA-43-2581-01 3 10970980 10970980 C A SLC6A11 Silent p.A442A 0.25 TCGA-43-2581-01 3 113327359 113327359 C T SIDT1 Missense_Mutation p.P566S 0.17 deleterious(0) probably_damaging(1) TCGA-43-2581-01 3 118647461 118647461 T A IGSF11 Missense_Mutation p.I107F 0.16 tolerated(0.06) possibly_damaging(0.549) TCGA-43-2581-01 3 119531533 119531533 C A NR1I2 Missense_Mutation p.L213M 0.19 tolerated(0.24) probably_damaging(0.918) TCGA-43-2581-01 3 119886537 119886537 G C GPR156 Missense_Mutation p.P596R 0.18 deleterious(0.02) probably_damaging(1) TCGA-43-2581-01 3 120428680 120428680 C A RABL3 Missense_Mutation p.G72V 0.15 deleterious(0) probably_damaging(0.96) TCGA-43-2581-01 3 122525726 122525726 G C DIRC2 Silent p.L122L 0.14 TCGA-43-2581-01 3 123359276 123359276 G T MYLK Nonsense_Mutation p.Y1565* 0.20 TCGA-43-2581-01 3 128181768 128181768 C A DNAJB8 Silent p.L107L 0.22 TCGA-43-2581-01 3 128990648 128990648 C T COPG1 Missense_Mutation p.P628S 0.24 tolerated(0.07) benign(0.02) TCGA-43-2581-01 3 130095105 130095105 C G COL6A5 Silent p.V31V 0.18 TCGA-43-2581-01 3 133099360 133099360 A T TMEM108 Missense_Mutation p.T269S 0.16 tolerated(0.52) benign(0.416) TCGA-43-2581-01 3 133476761 133476761 C G TF Missense_Mutation p.T340S 0.22 tolerated(0.88) benign(0.015) TCGA-43-2581-01 3 133661460 133661460 C A SLCO2A1 Missense_Mutation p.M538I 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-43-2581-01 3 138724582 138724582 C A PRR23A Missense_Mutation p.A177S 0.19 tolerated(0.05) possibly_damaging(0.672) TCGA-43-2581-01 3 139292446 139292446 G T NMNAT3 Missense_Mutation p.P87T 0.17 tolerated(0.27) benign(0.008) TCGA-43-2581-01 3 142499859 142499859 T A TRPC1 Nonsense_Mutation p.Y316* 0.12 TCGA-43-2581-01 3 148577783 148577783 G C CPB1 Silent p.L416L 0.18 TCGA-43-2581-01 3 148577785 148577785 A T CPB1 Missense_Mutation p.Y417F 0.18 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-43-2581-01 3 148601603 148601603 G T CPA3 Splice_Site p.X327_splice 0.24 TCGA-43-2581-01 3 158409360 158409360 G T GFM1 3'UTR 0.16 TCGA-43-2581-01 3 161220820 161220820 C G OTOL1 Missense_Mutation p.P175R 0.30 tolerated(0.53) unknown(0) TCGA-43-2581-01 3 164756889 164756889 C A SI Missense_Mutation p.A760S 0.27 deleterious(0.02) possibly_damaging(0.647) TCGA-43-2581-01 3 164906811 164906811 C G SLITRK3 Missense_Mutation p.R603P 0.25 deleterious(0) probably_damaging(0.979) TCGA-43-2581-01 3 167023591 167023591 G T ZBBX Missense_Mutation p.S522Y 0.07 tolerated(0.05) benign(0.273) TCGA-43-2581-01 3 169644490 169644490 C A SAMD7 Missense_Mutation p.A147D 0.15 tolerated(0.59) probably_damaging(0.927) TCGA-43-2581-01 3 181430595 181430595 G T SOX2 Silent p.L149L 0.29 TCGA-43-2581-01 3 184542458 184542458 G T VPS8 Missense_Mutation p.S13I 0.24 deleterious_low_confidence(0.03) benign(0.006) TCGA-43-2581-01 3 185969656 185969656 G A DGKG Silent p.P551P 0.15 TCGA-43-2581-01 3 194126646 194126646 T G ATP13A3 3'UTR 0.20 TCGA-43-2581-01 3 21552464 21552464 C A ZNF385D Missense_Mutation p.A110S 0.17 tolerated(0.23) probably_damaging(0.935) TCGA-43-2581-01 3 25670394 25670394 T A TOP2B Missense_Mutation p.D612V 0.15 deleterious(0.01) benign(0.026) TCGA-43-2581-01 3 3111982 3111982 C T IL5RA Missense_Mutation p.S397N 0.28 tolerated(0.33) benign(0.001) TCGA-43-2581-01 3 3143456 3143456 G A IL5RA Missense_Mutation p.A96V 0.34 deleterious(0.02) probably_damaging(1) TCGA-43-2581-01 3 38265350 38265350 A T OXSR1 Silent p.T216T 0.31 TCGA-43-2581-01 3 38591836 38591836 G T SCN5A Missense_Mutation p.D2009E 0.22 tolerated_low_confidence(0.11) benign(0.017) TCGA-43-2581-01 3 43760019 43760019 G T ABHD5 Missense_Mutation p.D349Y 0.24 deleterious(0) probably_damaging(0.992) TCGA-43-2581-01 3 4699876 4699876 G T ITPR1 Silent p.L340L 0.22 TCGA-43-2581-01 3 49212197 49212197 G T KLHDC8B Silent p.P188P 0.29 TCGA-43-2581-01 3 58351614 58351614 G T PXK Missense_Mutation p.R39L 0.24 deleterious(0) possibly_damaging(0.897) TCGA-43-2581-01 3 65342244 65342244 C A MAGI1 Missense_Mutation p.D1400Y 0.23 deleterious(0.03) unknown(0) TCGA-43-2581-01 3 6903580 6903580 C A GRM7 Missense_Mutation p.L169M 0.28 deleterious(0.01) possibly_damaging(0.603) TCGA-43-2581-01 3 77666761 77666761 A T ROBO2 Missense_Mutation p.T1147S 0.23 tolerated(0.15) benign(0.292) TCGA-43-2581-01 3 89462309 89462309 G A EPHA3 Missense_Mutation p.R594K 0.23 tolerated(1) benign(0.001) TCGA-43-2581-01 3 93596020 93596020 C A PROS1 Missense_Mutation p.V554F 0.19 deleterious(0.05) possibly_damaging(0.878) TCGA-43-2581-01 3 97731400 97731400 C A GABRR3 Intron 0.17 TCGA-43-2581-01 3 97983383 97983383 G T OR5H6 Silent p.V85V 0.16 TCGA-43-2581-01 4 100208806 100208806 G T ADH1A Missense_Mutation p.A12E 0.15 deleterious(0) probably_damaging(0.999) TCGA-43-2581-01 4 100232722 100232722 A G ADH1B Missense_Mutation p.M307T 0.18 tolerated(0.12) benign(0.008) TCGA-43-2581-01 4 100510863 100510863 G T MTTP Missense_Mutation p.A153S 0.18 deleterious(0.04) possibly_damaging(0.864) TCGA-43-2581-01 4 102951124 102951124 G A BANK1 Missense_Mutation p.M534I 0.07 tolerated(0.63) benign(0.004) TCGA-43-2581-01 4 106307724 106307724 C A PPA2 Silent p.S313S 0.12 TCGA-43-2581-01 4 107845331 107845331 G - DKK2 Frame_Shift_Del p.S187* 0.22 TCGA-43-2581-01 4 109895706 109895706 C A COL25A1 Missense_Mutation p.G150C 0.22 deleterious(0) unknown(0) TCGA-43-2581-01 4 110222991 110222991 C G COL25A1 Missense_Mutation p.R62T 0.14 deleterious(0) unknown(0) TCGA-43-2581-01 4 113436242 113436242 C A NEUROG2 Silent p.A130A 0.17 TCGA-43-2581-01 4 114276509 114276509 A G ANK2 Silent p.E2245E 0.07 TCGA-43-2581-01 4 122854262 122854262 A T TRPC3 Intron 0.13 TCGA-43-2581-01 4 123156162 123156162 T A KIAA1109 Silent p.I1186I 0.12 TCGA-43-2581-01 4 123156163 123156163 C T KIAA1109 Missense_Mutation p.P1187S 0.14 possibly_damaging(0.783) TCGA-43-2581-01 4 123156164 123156164 C T KIAA1109 Missense_Mutation p.P1187L 0.12 probably_damaging(0.919) TCGA-43-2581-01 4 123274242 123274242 G T KIAA1109 Missense_Mutation p.W4678L 0.18 probably_damaging(0.999) TCGA-43-2581-01 4 123329164 123329164 A T ADAD1 Missense_Mutation p.T276S 0.20 deleterious(0.05) possibly_damaging(0.62) TCGA-43-2581-01 4 126329949 126329949 G C FAT4 Missense_Mutation p.G1974R 0.25 probably_damaging(1) TCGA-43-2581-01 4 126373614 126373614 G C FAT4 Missense_Mutation p.G3815R 0.12 probably_damaging(0.973) TCGA-43-2581-01 4 134072881 134072881 G C PCDH10 Missense_Mutation p.R529P 0.19 deleterious(0) probably_damaging(1) TCGA-43-2581-01 4 141888921 141888921 G T RNF150 Silent p.T197T 0.17 TCGA-43-2581-01 4 143029259 143029259 C A INPP4B Missense_Mutation p.K787N 0.22 tolerated(0.2) possibly_damaging(0.876) TCGA-43-2581-01 4 145061870 145061870 C A GYPA 5'UTR 0.18 TCGA-43-2581-01 4 146648103 146648103 T C C4orf51 Silent p.F116F 0.25 TCGA-43-2581-01 4 148787870 148787870 C T ARHGAP10 Missense_Mutation p.S202L 0.22 deleterious(0.02) benign(0.001) TCGA-43-2581-01 4 159789786 159789786 C T FNIP2 Silent p.P666P 0.27 TCGA-43-2581-01 4 162307501 162307501 C T FSTL5 Missense_Mutation p.V648I 0.19 tolerated(0.68) benign(0) TCGA-43-2581-01 4 164246900 164246900 C A NPY1R Missense_Mutation p.R237L 0.13 tolerated(0.13) probably_damaging(0.982) TCGA-43-2581-01 4 164272171 164272171 T A NPY5R Missense_Mutation p.L249H 0.12 tolerated(0.23) possibly_damaging(0.651) TCGA-43-2581-01 4 164393740 164393740 G T TKTL2 Missense_Mutation p.R383S 0.25 deleterious(0.01) probably_damaging(0.977) TCGA-43-2581-01 4 170477230 170477230 C A NEK1 Missense_Mutation p.S428I 0.16 tolerated(0.06) benign(0.018) TCGA-43-2581-01 4 184210713 184210713 G T WWC2 Missense_Mutation p.Q1103H 0.22 tolerated(0.32) possibly_damaging(0.62) TCGA-43-2581-01 4 185940877 185940877 G T HELT Nonsense_Mutation p.E122* 0.29 TCGA-43-2581-01 4 190876238 190876238 G T FRG1 Missense_Mutation p.D122Y 0.08 deleterious(0.04) probably_damaging(0.963) TCGA-43-2581-01 4 20529982 20529982 C A SLIT2 Intron 0.20 TCGA-43-2581-01 4 20714444 20714444 G T PACRGL Missense_Mutation p.V134L 0.18 tolerated(0.31) possibly_damaging(0.456) TCGA-43-2581-01 4 22694592 22694592 G T GBA3 5'UTR 0.20 TCGA-43-2581-01 4 2306901 2306901 C A ZFYVE28 Missense_Mutation p.R389L 0.17 tolerated_low_confidence(0.13) benign(0.124) TCGA-43-2581-01 4 3189499 3189499 A G HTT Missense_Mutation p.Y1704C 0.19 benign(0.007) TCGA-43-2581-01 4 3210632 3210632 G T HTT Silent p.P2095P 0.18 TCGA-43-2581-01 4 44624477 44624477 G T YIPF7 Missense_Mutation p.P266H 0.28 deleterious(0) probably_damaging(1) TCGA-43-2581-01 4 46966986 46966986 C A GABRA4 Splice_Site p.X378_splice 0.20 TCGA-43-2581-01 4 47559919 47559919 G T ATP10D Missense_Mutation p.S688I 0.21 tolerated(0.1) benign(0.285) TCGA-43-2581-01 4 47655647 47655647 G T CORIN Nonsense_Mutation p.S589* 0.15 TCGA-43-2581-01 4 52863992 52863992 C A LRRC66 Missense_Mutation p.D260Y 0.21 tolerated(0.57) benign(0.002) TCGA-43-2581-01 4 55139787 55139787 C G PDGFRA Missense_Mutation p.T483S 0.14 tolerated(0.55) benign(0.021) TCGA-43-2581-01 4 55161575 55161575 G T PDGFRA 3'UTR 0.14 TCGA-43-2581-01 4 56837435 56837435 G A CEP135 Splice_Site p.X371_splice 0.22 TCGA-43-2581-01 4 62758547 62758547 C T LPHN3 Missense_Mutation p.L484F 0.25 tolerated(0.7) benign(0.035) TCGA-43-2581-01 4 68925151 68925151 C A TMPRSS11F Nonsense_Mutation p.E351* 0.18 TCGA-43-2581-01 4 68928495 68928495 C A TMPRSS11F Intron 0.20 TCGA-43-2581-01 4 70079772 70079772 C A UGT2B11 Missense_Mutation p.W223C 0.20 deleterious(0.03) benign(0.046) TCGA-43-2581-01 4 70921233 70921233 C A HTN1 Silent p.R41R 0.19 TCGA-43-2581-01 4 71255676 71255676 C A SMR3B 3'UTR 0.13 TCGA-43-2581-01 4 74863933 74863933 C T CXCL5 Missense_Mutation p.V78M 0.27 deleterious(0) probably_damaging(0.984) TCGA-43-2581-01 4 74964326 74964326 C T CXCL2 Missense_Mutation p.M100I 0.17 tolerated(0.64) benign(0.001) TCGA-43-2581-01 4 76539512 76539512 C T CDKL2 Missense_Mutation p.G97E 0.18 deleterious(0) probably_damaging(1) TCGA-43-2581-01 4 80328109 80328109 C T GK2 Missense_Mutation p.G416R 0.19 deleterious(0.01) benign(0.139) TCGA-43-2581-01 4 90816169 90816169 G A MMRN1 Missense_Mutation p.G16E 0.20 deleterious_low_confidence(0.03) possibly_damaging(0.793) TCGA-43-2581-01 4 90856834 90856834 C G MMRN1 Missense_Mutation p.P668R 0.15 tolerated(0.3) possibly_damaging(0.494) TCGA-43-2581-01 4 96470113 96470113 C A UNC5C 5'UTR 0.23 TCGA-43-2581-01 4 98902439 98902439 C A STPG2 Missense_Mutation p.A215S 0.21 deleterious(0.02) probably_damaging(0.996) TCGA-43-2581-01 5 112179672 112179672 G C APC Missense_Mutation p.S2794T 0.24 benign(0.122) TCGA-43-2581-01 5 115142163 115142163 C A CDO1 Silent p.V152V 0.16 TCGA-43-2581-01 5 120021880 120021880 C T PRR16 Missense_Mutation p.P108S 0.15 tolerated_low_confidence(0.06) probably_damaging(0.999) TCGA-43-2581-01 5 121188452 121188452 C A FTMT 3'UTR 0.07 TCGA-43-2581-01 5 126676253 126676253 G T MEGF10 Nonsense_Mutation p.E84* 0.21 TCGA-43-2581-01 5 127680190 127680190 C A FBN2 Missense_Mutation p.C1077F 0.29 deleterious(0) possibly_damaging(0.854) TCGA-43-2581-01 5 127681108 127681108 G A FBN2 Missense_Mutation p.P1053L 0.09 deleterious(0) possibly_damaging(0.755) TCGA-43-2581-01 5 135277049 135277049 C A FBXL21 RNA 0.20 TCGA-43-2581-01 5 136963997 136963997 C A KLHL3 Missense_Mutation p.R527L 0.11 deleterious(0) probably_damaging(0.963) TCGA-43-2581-01 5 137488192 137488192 G T BRD8 Missense_Mutation p.N945K 0.12 deleterious_low_confidence(0.03) benign(0.091) TCGA-43-2581-01 5 13754396 13754396 T A DNAH5 Missense_Mutation p.T3491S 0.20 possibly_damaging(0.621) TCGA-43-2581-01 5 140176859 140176859 G T PCDHA2 Missense_Mutation p.M770I 0.08 tolerated_low_confidence(0.07) benign(0.316) TCGA-43-2581-01 5 140182028 140182028 G T PCDHA3 Nonsense_Mutation p.E416* 0.18 TCGA-43-2581-01 5 140203692 140203692 G T PCDHA5 Missense_Mutation p.G778C 0.17 tolerated_low_confidence(0.66) benign(0.018) TCGA-43-2581-01 5 140215759 140215759 T A PCDHA7 Silent p.V597V 0.10 TCGA-43-2581-01 5 140221957 140221957 G A PCDHA8 Missense_Mutation p.A351T 0.08 tolerated_low_confidence(1) benign(0) TCGA-43-2581-01 5 140502735 140502735 A T PCDHB4 Silent p.P385P 0.11 TCGA-43-2581-01 5 140537766 140537766 G T PCDHB17 3'UTR 0.10 TCGA-43-2581-01 5 140573662 140573662 C G PCDHB10 Missense_Mutation p.L513V 0.04 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-43-2581-01 5 140590277 140590277 G - PCDHB12 Frame_Shift_Del p.A600Pfs*31 0.24 TCGA-43-2581-01 5 140595174 140595174 C T PCDHB13 Silent p.P493P 0.16 TCGA-43-2581-01 5 140605193 140605193 C A PCDHB14 Missense_Mutation p.L706I 0.16 tolerated_low_confidence(0.15) benign(0.426) TCGA-43-2581-01 5 140711873 140711873 C A PCDHGA1 Missense_Mutation p.P541H 0.15 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-43-2581-01 5 140731334 140731334 G T PCDHGB1 Missense_Mutation p.V503L 0.10 tolerated(0.06) benign(0.182) TCGA-43-2581-01 5 140740268 140740268 G T PCDHGB2 Missense_Mutation p.R189L 0.18 tolerated(0.09) benign(0.157) TCGA-43-2581-01 5 140741397 140741397 C A PCDHGB2 Silent p.P565P 0.17 TCGA-43-2581-01 5 140741591 140741591 G C PCDHGB2 Missense_Mutation p.R630P 0.26 deleterious(0.01) possibly_damaging(0.597) TCGA-43-2581-01 5 140754886 140754886 G T PCDHGA6 Silent p.R412R 0.25 TCGA-43-2581-01 5 140755676 140755676 G T PCDHGA6 Missense_Mutation p.G676C 0.09 deleterious_low_confidence(0) possibly_damaging(0.896) TCGA-43-2581-01 5 140772711 140772711 G C PCDHGA8 Missense_Mutation p.E111Q 0.23 deleterious_low_confidence(0.01) probably_damaging(0.969) TCGA-43-2581-01 5 141059943 141059943 C T ARAP3 Silent p.R37R 0.28 TCGA-43-2581-01 5 147593512 147593512 A T SPINK6 Missense_Mutation p.T41S 0.08 deleterious(0.04) probably_damaging(0.999) TCGA-43-2581-01 5 148742232 148742232 G C PCYOX1L Missense_Mutation p.V41L 0.09 tolerated(0.09) unknown(0) TCGA-43-2581-01 5 149449613 149449613 G A CSF1R Nonsense_Mutation p.Q445* 0.16 TCGA-43-2581-01 5 153030030 153030030 G T GRIA1 Missense_Mutation p.V211L 0.10 tolerated(0.28) benign(0.156) TCGA-43-2581-01 5 153709221 153709221 C A GALNT10 Missense_Mutation p.T164N 0.29 deleterious(0) probably_damaging(0.999) TCGA-43-2581-01 5 154252160 154252160 G T CNOT8 Missense_Mutation p.Q226H 0.14 deleterious(0) probably_damaging(0.998) TCGA-43-2581-01 5 160047670 160047670 C A ATP10B Missense_Mutation p.E700D 0.18 tolerated(0.53) benign(0.01) TCGA-43-2581-01 5 167617357 167617357 G T TENM2 Missense_Mutation p.C862F 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-43-2581-01 5 167868812 167868812 G C WWC1 Missense_Mutation p.M802I 0.10 tolerated(0.23) benign(0) TCGA-43-2581-01 5 169702323 169702323 C A LCP2 Splice_Site p.X96_splice 0.14 TCGA-43-2581-01 5 172659655 172659655 C T NKX2-5 Missense_Mutation p.G298R 0.15 deleterious(0) probably_damaging(0.98) TCGA-43-2581-01 5 172752942 172752942 A T STC2 Missense_Mutation p.S75T 0.10 tolerated(0.38) probably_damaging(0.999) TCGA-43-2581-01 5 176305316 176305316 C G UNC5A Missense_Mutation p.D647E 0.19 deleterious(0.05) possibly_damaging(0.499) TCGA-43-2581-01 5 176306489 176306489 G T UNC5A Missense_Mutation p.S788I 0.19 deleterious(0) possibly_damaging(0.642) TCGA-43-2581-01 5 176825359 176825359 T A SLC34A1 3'UTR 0.14 TCGA-43-2581-01 5 178540897 178540897 G A ADAMTS2 Missense_Mutation p.R1203W 0.13 tolerated_low_confidence(0.05) benign(0.033) TCGA-43-2581-01 5 178554995 178554995 T A ADAMTS2 Missense_Mutation p.K861M 0.19 deleterious(0) probably_damaging(0.991) TCGA-43-2581-01 5 21802394 21802394 C A CDH12 Nonsense_Mutation p.E380* 0.17 TCGA-43-2581-01 5 22078882 22078882 A G CDH12 5'UTR 0.30 TCGA-43-2581-01 5 24535373 24535373 G C CDH10 Missense_Mutation p.A221G 0.21 deleterious(0) probably_damaging(0.96) TCGA-43-2581-01 5 2749796 2749796 T A IRX2 Nonsense_Mutation p.K119* 0.30 TCGA-43-2581-01 5 35644553 35644553 G T SPEF2 Missense_Mutation p.A171S 0.20 tolerated(0.28) benign(0.039) TCGA-43-2581-01 5 37170329 37170329 T A C5orf42 Missense_Mutation p.L2092F 0.20 tolerated(0.1) possibly_damaging(0.662) TCGA-43-2581-01 5 39202246 39202246 G A FYB Missense_Mutation p.P283S 0.18 tolerated(0.05) probably_damaging(0.999) TCGA-43-2581-01 5 39389972 39389972 C A DAB2 Missense_Mutation p.K175N 0.13 deleterious(0.01) possibly_damaging(0.875) TCGA-43-2581-01 5 40681445 40681445 G A PTGER4 Missense_Mutation p.R117H 0.09 deleterious(0) probably_damaging(1) TCGA-43-2581-01 5 41005682 41005682 G T MROH2B Missense_Mutation p.T1272N 0.35 tolerated(0.52) benign(0.018) TCGA-43-2581-01 5 43704512 43704512 A C NNT 3'UTR 0.26 TCGA-43-2581-01 5 50687184 50687184 C A ISL1 Missense_Mutation p.P281Q 0.20 tolerated(0.08) benign(0.094) TCGA-43-2581-01 5 52360842 52360842 G T ITGA2 Missense_Mutation p.G568V 0.21 deleterious(0) probably_damaging(0.954) TCGA-43-2581-01 5 56777637 56777637 A C ACTBL2 Missense_Mutation p.L300V 0.25 deleterious_low_confidence(0) possibly_damaging(0.466) TCGA-43-2581-01 5 56777638 56777638 C A ACTBL2 Silent p.V299V 0.25 TCGA-43-2581-01 5 61923219 61923219 G A IPO11 3'UTR 0.09 TCGA-43-2581-01 5 64892897 64892897 C A TRIM23 Missense_Mutation p.M430I 0.07 tolerated(0.3) benign(0.009) TCGA-43-2581-01 5 66479813 66479813 G T CD180 Missense_Mutation p.F286L 0.21 tolerated(0.11) benign(0.189) TCGA-43-2581-01 5 66492431 66492431 C A CD180 Silent p.L13L 0.12 TCGA-43-2581-01 5 68524115 68524115 G C MRPS36 Silent p.L65L 0.24 TCGA-43-2581-01 5 74973698 74973698 A G POC5 Silent p.D495D 0.16 TCGA-43-2581-01 5 76251581 76251581 G C CRHBP Missense_Mutation p.S146T 0.13 tolerated(0.73) benign(0.002) TCGA-43-2581-01 5 78350075 78350075 C A DMGDH Missense_Mutation p.A158S 0.14 tolerated(0.67) benign(0.016) TCGA-43-2581-01 5 79033166 79033166 G T CMYA5 Missense_Mutation p.D2860Y 0.19 possibly_damaging(0.577) TCGA-43-2581-01 5 82816319 82816319 G T VCAN Nonsense_Mutation p.E732* 0.13 TCGA-43-2581-01 5 85578470 85578470 G C NBPF22P RNA 0.17 TCGA-43-2581-01 5 87501734 87501734 C A TMEM161B Missense_Mutation p.A233S 0.11 deleterious(0.03) possibly_damaging(0.762) TCGA-43-2581-01 5 9197325 9197325 C T SEMA5A Silent p.S341S 0.15 TCGA-43-2581-01 5 9224891 9224891 C A SEMA5A Missense_Mutation p.A181S 0.17 deleterious(0) probably_damaging(0.999) TCGA-43-2581-01 6 102516295 102516295 C A GRIK2 Missense_Mutation p.P879Q 0.24 tolerated(0.06) probably_damaging(0.912) TCGA-43-2581-01 6 108768448 108768448 G T LACE1 Missense_Mutation p.G280V 0.29 deleterious(0) possibly_damaging(0.688) TCGA-43-2581-01 6 112375428 112375428 G T WISP3 5'Flank 0.28 TCGA-43-2581-01 6 128312006 128312006 C A PTPRK Missense_Mutation p.D1008Y 0.12 deleterious(0) probably_damaging(0.977) TCGA-43-2581-01 6 130762652 130762652 C T TMEM200A Missense_Mutation p.S362F 0.28 deleterious(0) possibly_damaging(0.691) TCGA-43-2581-01 6 132196928 132196928 G T ENPP1 Missense_Mutation p.G550C 0.29 deleterious(0) probably_damaging(0.997) TCGA-43-2581-01 6 132649221 132649221 G T MOXD1 Missense_Mutation p.L293I 0.23 tolerated(1) benign(0.128) TCGA-43-2581-01 6 134496020 134496020 C A SGK1 Intron 0.26 TCGA-43-2581-01 6 136597258 136597258 C G BCLAF1 Missense_Mutation p.E469Q 0.08 tolerated_low_confidence(0.06) possibly_damaging(0.607) TCGA-43-2581-01 6 146625930 146625930 C A GRM1 Nonsense_Mutation p.C378* 0.22 TCGA-43-2581-01 6 146625931 146625931 C G GRM1 Missense_Mutation p.R379G 0.22 deleterious(0) possibly_damaging(0.826) TCGA-43-2581-01 6 157510847 157510847 G T ARID1B Missense_Mutation p.G1208C 0.35 probably_damaging(0.94) TCGA-43-2581-01 6 157713868 157713868 T A TMEM242 3'UTR 0.31 TCGA-43-2581-01 6 160551218 160551218 G A SLC22A1 Missense_Mutation p.G165D 0.18 tolerated(0.18) benign(0.371) TCGA-43-2581-01 6 161012040 161012040 G T LPA Missense_Mutation p.N1241K 0.31 tolerated(0.09) probably_damaging(0.998) TCGA-43-2581-01 6 161016558 161016558 G T LPA Silent p.T1099T 0.28 TCGA-43-2581-01 6 165846496 165846496 C G PDE10A Missense_Mutation p.W220S 0.21 tolerated(0.38) possibly_damaging(0.511) TCGA-43-2581-01 6 17788051 17788051 C A KIF13A Missense_Mutation p.R1106L 0.17 deleterious(0) probably_damaging(0.937) TCGA-43-2581-01 6 18225821 18225821 T C DEK 3'UTR 0.26 TCGA-43-2581-01 6 26423291 26423291 C T BTN2A3P RNA 0.15 TCGA-43-2581-01 6 28327314 28327314 G T ZKSCAN3 5'UTR 0.16 TCGA-43-2581-01 6 28887813 28887813 C A TRIM27 Missense_Mutation p.Q241H 0.25 tolerated(0.18) benign(0.018) TCGA-43-2581-01 6 29323454 29323454 C A OR5V1 Missense_Mutation p.Q173H 0.23 tolerated(0.16) benign(0.025) TCGA-43-2581-01 6 29408092 29408092 G T OR10C1 Missense_Mutation p.M100I 0.26 deleterious(0.01) benign(0.182) TCGA-43-2581-01 6 30638587 30638587 G A DHX16 Silent p.L197L 0.16 TCGA-43-2581-01 6 30675171 30675171 T A MDC1 Missense_Mutation p.K1025M 0.19 tolerated_low_confidence(0.14) benign(0.271) TCGA-43-2581-01 6 31473420 31473420 A G MICB Missense_Mutation p.M33V 0.20 deleterious(0) benign(0.008) TCGA-43-2581-01 6 31548626 31548626 G T LTB Missense_Mutation p.P199T 0.20 tolerated(0.45) benign(0.11) TCGA-43-2581-01 6 31548627 31548627 C T LTB Silent p.G198G 0.20 TCGA-43-2581-01 6 31557590 31557590 T G NCR3 Silent p.T119T 0.11 TCGA-43-2581-01 6 32944068 32944068 G T BRD2 Missense_Mutation p.V218F 0.28 deleterious(0.04) benign(0.197) TCGA-43-2581-01 6 38029508 38029508 G T ZFAND3 Silent p.P84P 0.25 TCGA-43-2581-01 6 401664 401664 T A IRF4 Missense_Mutation p.L329Q 0.20 tolerated(0.18) probably_damaging(0.988) TCGA-43-2581-01 6 42236745 42236745 G A TRERF1 Missense_Mutation p.P195L 0.11 deleterious_low_confidence(0) benign(0.432) TCGA-43-2581-01 6 43472985 43472985 C T TJAP1 Nonsense_Mutation p.Q356* 0.21 TCGA-43-2581-01 6 49754376 49754376 G T PGK2 Silent p.S175S 0.21 TCGA-43-2581-01 6 52013755 52013755 C T MIR133B RNA 0.15 TCGA-43-2581-01 6 54173302 54173302 G A TINAG 5'UTR 0.17 TCGA-43-2581-01 6 54806505 54806505 T C FAM83B Silent p.P912P 0.26 TCGA-43-2581-01 6 66205404 66205404 C A EYS 5'UTR 0.40 TCGA-43-2581-01 6 69685216 69685216 G C BAI3 Missense_Mutation p.R573T 0.22 deleterious(0) benign(0.343) TCGA-43-2581-01 6 70049307 70049307 C A BAI3 Missense_Mutation p.R1124S 0.24 deleterious(0.03) probably_damaging(0.997) TCGA-43-2581-01 6 70944604 70944604 C A COL9A1 Nonsense_Mutation p.G718* 0.27 TCGA-43-2581-01 6 78172079 78172079 G C HTR1B Missense_Mutation p.L348V 0.17 tolerated(0.35) benign(0.001) TCGA-43-2581-01 6 91226167 91226167 C A MAP3K7 3'UTR 0.34 TCGA-43-2581-01 6 91246238 91246238 T C MAP3K7 Intron 0.31 TCGA-43-2581-01 7 100390118 100390118 C A ZAN Missense_Mutation p.Q2601K 0.27 unknown(0) TCGA-43-2581-01 7 100678975 100678975 T A MUC17 Silent p.P1426P 0.21 TCGA-43-2581-01 7 100844048 100844048 C A MOGAT3 Missense_Mutation p.V30L 0.26 tolerated(0.08) benign(0.263) TCGA-43-2581-01 7 101256778 101256778 T C MYL10 Missense_Mutation p.T220A 0.12 deleterious(0) probably_damaging(0.995) TCGA-43-2581-01 7 103136228 103136228 T C RELN Missense_Mutation p.H3104R 0.08 tolerated(0.14) benign(0.027) TCGA-43-2581-01 7 103969463 103969463 G T LHFPL3 Missense_Mutation p.C79F 0.17 deleterious(0) probably_damaging(0.999) TCGA-43-2581-01 7 106508160 106508160 A G PIK3CG Missense_Mutation p.K52E 0.12 tolerated(0.72) benign(0.001) TCGA-43-2581-01 7 117874881 117874881 G T ANKRD7 Missense_Mutation p.V141F 0.16 deleterious(0) probably_damaging(0.99) TCGA-43-2581-01 7 120765877 120765877 C A CPED1 Nonsense_Mutation p.C355* 0.05 TCGA-43-2581-01 7 121944342 121944342 G T FEZF1 Missense_Mutation p.H50Q 0.26 tolerated_low_confidence(0.73) benign(0.001) TCGA-43-2581-01 7 123119974 123119974 C A IQUB Nonsense_Mutation p.E429* 0.12 TCGA-43-2581-01 7 124404470 124404470 C - GPR37 Frame_Shift_Del p.K188Nfs*58 0.33 TCGA-43-2581-01 7 124510965 124510965 C A POT1 Missense_Mutation p.K85N 0.20 deleterious(0) probably_damaging(0.968) TCGA-43-2581-01 7 126883157 126883157 C G GRM8 Missense_Mutation p.Q34H 0.14 tolerated(0.26) benign(0.201) TCGA-43-2581-01 7 127253565 127253565 G C PAX4 Missense_Mutation p.P187R 0.12 deleterious(0) probably_damaging(1) TCGA-43-2581-01 7 127979363 127979363 C G RBM28 Missense_Mutation p.C97S 0.12 tolerated(1) benign(0) TCGA-43-2581-01 7 128035312 128035312 C A IMPDH1 Silent p.R426R 0.12 TCGA-43-2581-01 7 128035313 128035313 C A IMPDH1 Missense_Mutation p.R426L 0.12 deleterious(0) probably_damaging(0.953) TCGA-43-2581-01 7 128388831 128388831 C T CALU Missense_Mutation p.T73I 0.16 deleterious(0) possibly_damaging(0.809) TCGA-43-2581-01 7 128850308 128850308 C A SMO Missense_Mutation p.A524D 0.16 deleterious(0.01) possibly_damaging(0.58) TCGA-43-2581-01 7 131878843 131878843 G T PLXNA4 Missense_Mutation p.S945Y 0.09 deleterious(0) probably_damaging(0.999) TCGA-43-2581-01 7 136700017 136700017 G T CHRM2 Silent p.R135R 0.11 TCGA-43-2581-01 7 137293798 137293798 C A DGKI Missense_Mutation p.G361C 0.18 tolerated(0.14) probably_damaging(0.962) TCGA-43-2581-01 7 141722146 141722146 G T MGAM Silent p.V263V 0.09 TCGA-43-2581-01 7 142498824 142498824 C T TRBC2 Missense_Mutation p.T34I 0.06 deleterious(0) probably_damaging(0.961) TCGA-43-2581-01 7 142606681 142606681 C A TRPV5 Missense_Mutation p.G624W 0.24 deleterious(0) probably_damaging(1) TCGA-43-2581-01 7 142723387 142723387 G C OR9A2 Missense_Mutation p.T278S 0.25 tolerated(0.09) possibly_damaging(0.803) TCGA-43-2581-01 7 143028743 143028743 G T CLCN1 Missense_Mutation p.K388N 0.25 deleterious(0) probably_damaging(0.985) TCGA-43-2581-01 7 143140767 143140767 G T TAS2R60 Missense_Mutation p.M74I 0.12 tolerated(1) benign(0.001) TCGA-43-2581-01 7 143573188 143573188 C A FAM115A Missense_Mutation p.G172W 0.26 deleterious(0) probably_damaging(1) TCGA-43-2581-01 7 147869355 147869355 G T CNTNAP2 Missense_Mutation p.G932V 0.14 deleterious(0) probably_damaging(0.999) TCGA-43-2581-01 7 147869376 147869376 C A CNTNAP2 Missense_Mutation p.S939Y 0.14 deleterious(0.02) probably_damaging(0.917) TCGA-43-2581-01 7 149481986 149481986 G T SSPO RNA 0.11 TCGA-43-2581-01 7 151716792 151716792 G T GALNTL5 Missense_Mutation p.R413L 0.18 deleterious(0.02) probably_damaging(0.972) TCGA-43-2581-01 7 15601408 15601408 G T AGMO Nonsense_Mutation p.Y21* 0.19 TCGA-43-2581-01 7 15666513 15666513 A T MEOX2 Missense_Mutation p.V183D 0.21 tolerated(0.09) possibly_damaging(0.452) TCGA-43-2581-01 7 18066439 18066439 A G PRPS1L1 3'UTR 0.28 TCGA-43-2581-01 7 20683124 20683124 G T ABCB5 Missense_Mutation p.A183S 0.16 tolerated(0.54) benign(0.089) TCGA-43-2581-01 7 20824767 20824767 G T SP8 Silent p.A223A 0.40 TCGA-43-2581-01 7 22533204 22533204 C G STEAP1B Silent p.L112L 0.25 TCGA-43-2581-01 7 23561338 23561338 C A TRA2A Missense_Mutation p.R53I 0.16 deleterious_low_confidence(0) benign(0.308) TCGA-43-2581-01 7 27148082 27148082 G A HOXA3 Nonsense_Mutation p.Q262* 0.22 TCGA-43-2581-01 7 34697900 34697900 C A NPSR1 5'UTR 0.11 TCGA-43-2581-01 7 36396561 36396561 G T KIAA0895 Missense_Mutation p.P273T 0.25 tolerated(0.09) benign(0.425) TCGA-43-2581-01 7 38389065 38389065 C A TRGV5 Missense_Mutation p.S82I 0.26 tolerated(0.05) benign(0.418) TCGA-43-2581-01 7 38574543 38574543 G T AMPH Missense_Mutation p.F46L 0.29 deleterious(0) possibly_damaging(0.816) TCGA-43-2581-01 7 44228649 44228649 C A GCK 5'UTR 0.29 TCGA-43-2581-01 7 4794121 4794121 G T FOXK1 Missense_Mutation p.G260C 0.17 deleterious(0) probably_damaging(0.976) TCGA-43-2581-01 7 4949561 4949561 A T MMD2 Missense_Mutation p.L187H 0.22 deleterious(0) probably_damaging(0.976) TCGA-43-2581-01 7 51287598 51287598 C A COBL Missense_Mutation p.A29S 0.29 tolerated(0.1) possibly_damaging(0.61) TCGA-43-2581-01 7 57188061 57188061 G T ZNF479 Missense_Mutation p.A354D 0.16 deleterious(0) benign(0.116) TCGA-43-2581-01 7 70885912 70885912 C G WBSCR17 Silent p.S261S 0.23 TCGA-43-2581-01 7 75442990 75442990 C T CCL24 Missense_Mutation p.G15D 0.16 deleterious(0.01) benign(0.091) TCGA-43-2581-01 7 8258025 8258025 C A ICA1 Missense_Mutation p.R163S 0.18 deleterious(0) probably_damaging(1) TCGA-43-2581-01 7 82583807 82583807 T A PCLO Missense_Mutation p.Q2154H 0.16 unknown(0) TCGA-43-2581-01 7 83636725 83636725 G C SEMA3A Missense_Mutation p.P362A 0.09 tolerated(0.08) possibly_damaging(0.682) TCGA-43-2581-01 7 84644520 84644520 T C SEMA3D Missense_Mutation p.I520V 0.21 tolerated(1) benign(0) TCGA-43-2581-01 7 90492580 90492580 A T CDK14 Missense_Mutation p.Y194F 0.28 tolerated(0.07) benign(0.072) TCGA-43-2581-01 7 90895852 90895852 G T FZD1 Missense_Mutation p.A553S 0.15 deleterious(0) probably_damaging(0.942) TCGA-43-2581-01 7 91864857 91864857 T C KRIT1 Missense_Mutation p.T197A 0.19 tolerated(0.83) benign(0) TCGA-43-2581-01 7 92120788 92120788 A C PEX1 Missense_Mutation p.L1079R 0.21 deleterious(0) possibly_damaging(0.899) TCGA-43-2581-01 7 92158104 92158104 C T RBM48 5'UTR 0.19 TCGA-43-2581-01 7 93063593 93063593 G T CALCR Missense_Mutation p.A422E 0.11 deleterious(0) probably_damaging(0.944) TCGA-43-2581-01 7 94167063 94167063 G A CASD1 Missense_Mutation p.G375S 0.17 tolerated(0.09) possibly_damaging(0.515) TCGA-43-2581-01 7 99757934 99757934 G T GAL3ST4 Silent p.R360R 0.27 TCGA-43-2581-01 8 100588008 100588008 C T VPS13B Missense_Mutation p.T1716I 0.21 tolerated(0.43) benign(0.006) TCGA-43-2581-01 8 100975193 100975193 T A RGS22 Missense_Mutation p.Y1210F 0.20 deleterious(0) probably_damaging(0.997) TCGA-43-2581-01 8 10464624 10464624 G C RP1L1 Silent p.A2328A 0.26 TCGA-43-2581-01 8 105361161 105361161 C A DCSTAMP Nonsense_Mutation p.C127* 0.27 TCGA-43-2581-01 8 11995403 11995403 G T USP17L2 Missense_Mutation p.N289K 0.20 tolerated(0.62) benign(0.024) TCGA-43-2581-01 8 124383964 124383964 C A ATAD2 Missense_Mutation p.R161I 0.07 deleterious(0) possibly_damaging(0.779) TCGA-43-2581-01 8 125022924 125022924 C A FER1L6 Silent p.S597S 0.18 TCGA-43-2581-01 8 130789826 130789826 G C GSDMC Missense_Mutation p.S3C 0.11 deleterious(0) probably_damaging(0.982) TCGA-43-2581-01 8 133036948 133036948 G T OC90 Missense_Mutation p.S405Y 0.13 tolerated(0.67) benign(0.386) TCGA-43-2581-01 8 133047070 133047070 C A OC90 Missense_Mutation p.D231Y 0.11 tolerated(0.19) probably_damaging(0.957) TCGA-43-2581-01 8 133900613 133900613 G C TG Missense_Mutation p.R854P 0.33 tolerated(0.16) benign(0.003) TCGA-43-2581-01 8 139144759 139144759 A G FAM135B 3'UTR 0.12 TCGA-43-2581-01 8 139160920 139160920 C A FAM135B Missense_Mutation p.Q1097H 0.10 deleterious(0.05) possibly_damaging(0.54) TCGA-43-2581-01 8 139701164 139701164 T A COL22A1 Missense_Mutation p.E953V 0.36 unknown(0) TCGA-43-2581-01 8 142154270 142154270 G T DENND3 Missense_Mutation p.C136F 0.12 tolerated(0.14) benign(0.029) TCGA-43-2581-01 8 144239840 144239840 A G LY6H Missense_Mutation p.F105L 0.17 tolerated(0.2) possibly_damaging(0.632) TCGA-43-2581-01 8 144946586 144946586 C A EPPK1 Missense_Mutation p.R279L 0.16 benign(0.082) TCGA-43-2581-01 8 145094967 145094967 G T SPATC1 Silent p.T123T 0.12 TCGA-43-2581-01 8 19214713 19214713 G T SH2D4A Splice_Site p.X172_splice 0.24 TCGA-43-2581-01 8 19362803 19362803 C A CSGALNACT1 Silent p.V181V 0.24 TCGA-43-2581-01 8 19682315 19682315 A T INTS10 Missense_Mutation p.S280C 0.20 deleterious(0.05) benign(0.386) TCGA-43-2581-01 8 27925081 27925081 G T NUGGC Missense_Mutation p.P221T 0.27 deleterious(0.03) possibly_damaging(0.825) TCGA-43-2581-01 8 3200843 3200843 C A CSMD1 Missense_Mutation p.D1202Y 0.24 possibly_damaging(0.716) TCGA-43-2581-01 8 33449707 33449707 C T DUSP26 Missense_Mutation p.V154M 0.30 tolerated(0.56) probably_damaging(0.998) TCGA-43-2581-01 8 38178628 38178628 T A WHSC1L1 Missense_Mutation p.T591S 0.20 tolerated(0.66) benign(0.002) TCGA-43-2581-01 8 38271249 38271249 G C FGFR1 Missense_Mutation p.S820C 0.30 tolerated(0.07) probably_damaging(0.999) TCGA-43-2581-01 8 38677230 38677230 G T TACC1 Silent p.T156T 0.16 TCGA-43-2581-01 8 52321018 52321018 C A PXDNL Missense_Mutation p.G1056C 0.20 deleterious(0) probably_damaging(1) TCGA-43-2581-01 8 52321569 52321569 C A PXDNL Missense_Mutation p.G872V 0.15 deleterious(0) probably_damaging(0.997) TCGA-43-2581-01 8 63973949 63973949 C A TTPA Missense_Mutation p.L233F 0.19 deleterious(0.01) probably_damaging(0.959) TCGA-43-2581-01 8 67342103 67342103 G T RRS1 Missense_Mutation p.R246L 0.09 deleterious(0.01) probably_damaging(0.918) TCGA-43-2581-01 8 72968047 72968047 C A TRPA1 Missense_Mutation p.G413V 0.19 deleterious(0) probably_damaging(1) TCGA-43-2581-01 8 72977769 72977769 C G TRPA1 Missense_Mutation p.D157H 0.17 deleterious(0.01) possibly_damaging(0.743) TCGA-43-2581-01 8 72987669 72987669 G T TRPA1 5'UTR 0.14 TCGA-43-2581-01 8 74516094 74516094 C G STAU2 Missense_Mutation p.G299A 0.18 tolerated(0.18) benign(0.214) TCGA-43-2581-01 8 77618136 77618136 G - ZFHX4 Frame_Shift_Del p.G605Efs*28 0.21 TCGA-43-2581-01 8 77764008 77764008 C A ZFHX4 Missense_Mutation p.H1617Q 0.13 benign(0.402) TCGA-43-2581-01 8 77764868 77764868 C A ZFHX4 Missense_Mutation p.A1904D 0.37 possibly_damaging(0.82) TCGA-43-2581-01 8 82714646 82714646 C A SNX16 Missense_Mutation p.V303F 0.08 deleterious(0) benign(0.055) TCGA-43-2581-01 8 85686829 85686829 G T RALYL Missense_Mutation p.G104V 0.28 tolerated(0.06) possibly_damaging(0.51) TCGA-43-2581-01 8 87081840 87081840 G T PSKH2 Silent p.G4G 0.45 TCGA-43-2581-01 8 87226854 87226854 C A SLC7A13 Missense_Mutation p.A401S 0.22 deleterious(0.03) possibly_damaging(0.568) TCGA-43-2581-01 8 88249149 88249149 G A CNBD1 Missense_Mutation p.V194I 0.21 tolerated(0.87) benign(0) TCGA-43-2581-01 8 92406479 92406479 C A SLC26A7 Missense_Mutation p.L657I 0.15 tolerated_low_confidence(0.11) possibly_damaging(0.567) TCGA-43-2581-01 8 93003966 93003966 G T RUNX1T1 Missense_Mutation p.Q309K 0.22 tolerated(0.14) benign(0.101) TCGA-43-2581-01 8 97274194 97274194 T C PTDSS1 5'UTR 0.24 TCGA-43-2581-01 8 97847307 97847307 C G CPQ Nonsense_Mutation p.Y180* 0.09 TCGA-43-2581-01 9 100424369 100424369 A G NCBP1 Missense_Mutation p.Q549R 0.19 tolerated(0.11) possibly_damaging(0.836) TCGA-43-2581-01 9 104324622 104324622 G T RNF20 Missense_Mutation p.R949L 0.23 deleterious(0) probably_damaging(0.97) TCGA-43-2581-01 9 104356919 104356919 C A PPP3R2 Silent p.A98A 0.16 TCGA-43-2581-01 9 104449114 104449114 C A GRIN3A Silent p.L356L 0.19 TCGA-43-2581-01 9 107331692 107331692 C G OR13C8 Missense_Mutation p.L82V 0.22 deleterious(0.01) probably_damaging(0.994) TCGA-43-2581-01 9 107380418 107380418 A T OR13C9 Missense_Mutation p.L23H 0.19 deleterious(0) probably_damaging(0.999) TCGA-43-2581-01 9 107535282 107535282 G T NIPSNAP3B Silent p.R224R 0.17 TCGA-43-2581-01 9 111655282 111655282 C A IKBKAP Missense_Mutation p.S981I 0.07 deleterious(0.04) benign(0.092) TCGA-43-2581-01 9 114305433 114305433 T A ZNF483 Missense_Mutation p.F740I 0.10 tolerated(0.86) benign(0.307) TCGA-43-2581-01 9 116038827 116038827 G A PRPF4 Silent p.Q10Q 0.19 TCGA-43-2581-01 9 116930451 116930451 G A COL27A1 Missense_Mutation p.A206T 0.23 unknown(0) TCGA-43-2581-01 9 119943398 119943398 C A ASTN2 Intron 0.21 TCGA-43-2581-01 9 120176884 120176884 G T ASTN2 Silent p.A111A 0.14 TCGA-43-2581-01 9 120176885 120176885 G T ASTN2 Missense_Mutation p.A111D 0.15 deleterious_low_confidence(0) unknown(0) TCGA-43-2581-01 9 125423957 125423957 G C OR1L1 5'Flank 0.20 TCGA-43-2581-01 9 12695587 12695587 G C TYRP1 Missense_Mutation p.R153P 0.18 tolerated(0.08) benign(0.37) TCGA-43-2581-01 9 128061225 128061225 C A GAPVD1 Missense_Mutation p.L9M 0.17 deleterious(0) probably_damaging(0.999) TCGA-43-2581-01 9 130167220 130167220 G T SLC2A8 Missense_Mutation p.S367I 0.19 tolerated(0.27) benign(0.027) TCGA-43-2581-01 9 131083879 131083879 C A TRUB2 Silent p.L80L 0.15 TCGA-43-2581-01 9 13205966 13205966 C T MPDZ Missense_Mutation p.D475N 0.19 tolerated(0.26) benign(0.062) TCGA-43-2581-01 9 133355142 133355142 C A ASS1 Missense_Mutation p.T243N 0.12 tolerated(0.15) benign(0.005) TCGA-43-2581-01 9 134165699 134165699 C A PPAPDC3 Silent p.S105S 0.23 TCGA-43-2581-01 9 135073725 135073725 A T NTNG2 Missense_Mutation p.T196S 0.18 deleterious(0) probably_damaging(0.947) TCGA-43-2581-01 9 135278058 135278058 T A TTF1 Missense_Mutation p.R51W 0.19 deleterious(0) possibly_damaging(0.869) TCGA-43-2581-01 9 135863747 135863747 C A GFI1B Silent p.S134S 0.43 TCGA-43-2581-01 9 135984069 135984069 C A RALGDS Nonsense_Mutation p.E257* 0.23 TCGA-43-2581-01 9 136277973 136277973 T A REXO4 Missense_Mutation p.K214M 0.23 tolerated(0.16) benign(0.025) TCGA-43-2581-01 9 139369859 139369859 T A SEC16A Missense_Mutation p.N737Y 0.20 deleterious(0) probably_damaging(0.94) TCGA-43-2581-01 9 139621340 139621340 G T FAM69B 3'Flank 0.18 TCGA-43-2581-01 9 18753350 18753350 G T ADAMTSL1 Missense_Mutation p.Q687H 0.22 deleterious(0) possibly_damaging(0.903) TCGA-43-2581-01 9 34385670 34385670 T A C9orf24 Missense_Mutation p.Y82F 0.22 deleterious(0.05) probably_damaging(0.953) TCGA-43-2581-01 9 34971548 34971548 G C KIAA1045 Missense_Mutation p.G85R 0.24 deleterious(0) probably_damaging(1) TCGA-43-2581-01 9 39149926 39149926 C A CNTNAP3 Missense_Mutation p.G509V 0.19 tolerated(0.26) probably_damaging(0.958) TCGA-43-2581-01 9 40772744 40772744 T G ZNF658 Missense_Mutation p.H844P 0.23 deleterious(0) probably_damaging(0.999) TCGA-43-2581-01 9 43624863 43624863 G T SPATA31A6 Missense_Mutation p.P1275H 0.18 deleterious(0) possibly_damaging(0.757) TCGA-43-2581-01 9 5920889 5920889 T A KIAA2026 Missense_Mutation p.S1703C 0.18 deleterious(0) possibly_damaging(0.54) TCGA-43-2581-01 9 6012796 6012796 C A RANBP6 Missense_Mutation p.G938C 0.19 deleterious(0) probably_damaging(1) TCGA-43-2581-01 9 6012797 6012797 C A RANBP6 Silent p.L937L 0.18 TCGA-43-2581-01 9 6486820 6486820 G T UHRF2 Splice_Site p.X465_splice 0.24 TCGA-43-2581-01 9 71951136 71951136 T C FAM189A2 5'UTR 0.08 TCGA-43-2581-01 9 80336339 80336339 T C GNAQ Missense_Mutation p.H327R 0.16 deleterious(0) probably_damaging(1) TCGA-43-2581-01 9 8341267 8341267 C A PTPRD Missense_Mutation p.R1650L 0.18 tolerated(0.18) probably_damaging(0.924) TCGA-43-2581-01 9 84606375 84606375 A T SPATA31D1 Silent p.L330L 0.18 TCGA-43-2581-01 9 8497247 8497247 C A PTPRD Nonsense_Mutation p.E782* 0.25 TCGA-43-2581-01 9 91940537 91940537 G T SECISBP2 Missense_Mutation p.K126N 0.22 tolerated(0.11) possibly_damaging(0.548) TCGA-43-2581-01 9 95177577 95177577 G C OMD Missense_Mutation p.L375V 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.539) TCGA-43-2581-01 X 100626659 100626659 G T BTK Missense_Mutation p.Q91K 0.22 tolerated(0.93) possibly_damaging(0.64) TCGA-43-2581-01 X 106117316 106117316 A G TBC1D8B 3'UTR 0.20 TCGA-43-2581-01 X 106236562 106236562 C A MORC4 Missense_Mutation p.R69M 0.23 deleterious(0) probably_damaging(0.99) TCGA-43-2581-01 X 106236563 106236563 T C MORC4 Missense_Mutation p.R69G 0.23 tolerated(0.15) possibly_damaging(0.908) TCGA-43-2581-01 X 123499637 123499637 G T SH2D1A Missense_Mutation p.R55L 0.27 deleterious(0) probably_damaging(0.998) TCGA-43-2581-01 X 123615585 123615585 G A TENM1 Nonsense_Mutation p.R1316* 0.18 TCGA-43-2581-01 X 125685303 125685303 G T DCAF12L1 Missense_Mutation p.A430E 0.28 deleterious(0) probably_damaging(0.947) TCGA-43-2581-01 X 125686419 125686419 C A DCAF12L1 Missense_Mutation p.R58L 0.16 deleterious(0.02) possibly_damaging(0.558) TCGA-43-2581-01 X 128703320 128703320 C G OCRL Missense_Mutation p.H516D 0.28 deleterious(0) probably_damaging(1) TCGA-43-2581-01 X 128901656 128901656 G C XPNPEP2 Silent p.L606L 0.26 TCGA-43-2581-01 X 134482891 134482891 G T ZNF449 Intron 0.17 TCGA-43-2581-01 X 135429973 135429973 C A GPR112 Missense_Mutation p.L1370M 0.22 deleterious(0.02) possibly_damaging(0.823) TCGA-43-2581-01 X 137714740 137714740 A G FGF13 3'Flank 0.29 TCGA-43-2581-01 X 140985356 140985356 G T MAGEC3 Intron 0.24 TCGA-43-2581-01 X 145075861 145075861 G T MIR890 RNA 0.26 TCGA-43-2581-01 X 14862096 14862096 T A FANCB Missense_Mutation p.T725S 0.28 tolerated(0.14) benign(0.084) TCGA-43-2581-01 X 150841061 150841061 G T PASD1 Missense_Mutation p.R615I 0.26 tolerated(0.59) benign(0) TCGA-43-2581-01 X 152036130 152036130 G T NSDHL Missense_Mutation p.L234F 0.27 deleterious(0.02) probably_damaging(0.93) TCGA-43-2581-01 X 152036131 152036131 G T NSDHL Missense_Mutation p.V235L 0.26 tolerated(0.07) probably_damaging(0.955) TCGA-43-2581-01 X 152612356 152612356 G A ZNF275 Silent p.R71R 0.24 TCGA-43-2581-01 X 15344121 15344121 G T PIGA Missense_Mutation p.P255T 0.23 deleterious(0.02) benign(0.2) TCGA-43-2581-01 X 153641903 153641903 A T TAZ Silent p.R123R 0.23 TCGA-43-2581-01 X 153881591 153881591 C A CTAG2 Missense_Mutation p.G67C 0.27 deleterious_low_confidence(0.04) unknown(0) TCGA-43-2581-01 X 18183269 18183269 T G BEND2 Missense_Mutation p.I754L 0.21 deleterious(0.01) probably_damaging(0.914) TCGA-43-2581-01 X 18183297 18183297 T C BEND2 Silent p.G744G 0.23 TCGA-43-2581-01 X 18183299 18183299 C A BEND2 Nonsense_Mutation p.G744* 0.22 TCGA-43-2581-01 X 21613470 21613470 A G CNKSR2 Missense_Mutation p.K645E 0.23 deleterious(0.01) possibly_damaging(0.626) TCGA-43-2581-01 X 30746887 30746887 T A GK 3'UTR 0.24 TCGA-43-2581-01 X 3228318 3228318 C A MXRA5 Missense_Mutation p.Q2642H 0.25 tolerated(0.11) benign(0.403) TCGA-43-2581-01 X 3235232 3235232 G T MXRA5 Missense_Mutation p.L2164I 0.36 deleterious(0.03) probably_damaging(1) TCGA-43-2581-01 X 3235233 3235233 G T MXRA5 Silent p.T2163T 0.36 TCGA-43-2581-01 X 37984555 37984555 C T SYTL5 Silent p.L638L 0.15 TCGA-43-2581-01 X 51150577 51150577 G A CXorf67 Missense_Mutation p.G237S 0.27 tolerated(0.43) benign(0) TCGA-43-2581-01 X 54099358 54099358 C A FAM120C 3'UTR 0.28 TCGA-43-2581-01 X 55287033 55287033 C A PAGE3 Nonsense_Mutation p.G85* 0.18 TCGA-43-2581-01 X 63410371 63410371 G C AMER1 Missense_Mutation p.D932E 0.37 tolerated(1) benign(0.002) TCGA-43-2581-01 X 63444222 63444222 T C ASB12 Missense_Mutation p.Q317R 0.22 tolerated(0.15) probably_damaging(0.988) TCGA-43-2581-01 X 65242569 65242569 C A VSIG4 Intron 0.29 TCGA-43-2581-01 X 67937799 67937799 C T STARD8 Missense_Mutation p.T348M 0.18 tolerated(0.13) benign(0.217) TCGA-43-2581-01 X 70607142 70607142 T C TAF1 Missense_Mutation p.I773T 0.26 deleterious(0) benign(0.1) TCGA-43-2581-01 X 73061282 73061282 C A XIST RNA 0.26 TCGA-43-2581-01 X 77359774 77359774 A T PGK1 5'UTR 0.26 TCGA-43-2581-01 X 84526122 84526122 G T ZNF711 Missense_Mutation p.R525I 0.18 deleterious(0) probably_damaging(0.992) TCGA-43-2581-01 X 88009404 88009404 C A CPXCR1 3'UTR 0.18 TCGA-43-2581-01 X 89177450 89177450 T A TGIF2LX Silent p.I122I 0.20 TCGA-43-2581-01 X 91132396 91132396 C T PCDH11X Missense_Mutation p.T386M 0.09 tolerated(0.07) benign(0.152) TCGA-43-2581-01 X 9862548 9862548 G T SHROOM2 Silent p.L200L 0.22 TCGA-43-2581-01 X 9900341 9900341 G T SHROOM2 Silent p.R1006R 0.24 TCGA-43-3394-01 10 84745280 84745280 G T NRG3 Silent p.L670L 0.27 TCGA-43-3394-01 10 98386609 98386609 C T PIK3AP1 Missense_Mutation p.E509K 0.27 tolerated(0.5) benign(0.002) TCGA-43-3394-01 11 114465423 114465423 G T NXPE4 Missense_Mutation p.S20Y 0.30 tolerated(1) benign(0.039) TCGA-43-3394-01 11 117335863 117335863 C G DSCAML1 Silent p.R1080R 0.18 TCGA-43-3394-01 11 123810699 123810699 A G OR4D5 Missense_Mutation p.I126V 0.42 deleterious(0.01) possibly_damaging(0.891) TCGA-43-3394-01 11 43923170 43923170 G A ALKBH3 Silent p.V188V 0.37 TCGA-43-3394-01 11 55418886 55418886 C T OR4S2 Silent p.P169P 0.40 TCGA-43-3394-01 11 56468490 56468490 C A OR9G1 Silent p.P209P 0.08 TCGA-43-3394-01 11 5758307 5758307 G T OR56B1 Silent p.L187L 0.13 TCGA-43-3394-01 11 5862830 5862830 G T OR52E6 Missense_Mutation p.L100I 0.18 tolerated(0.13) probably_damaging(0.996) TCGA-43-3394-01 11 62301162 62301162 T A AHNAK Nonsense_Mutation p.K243* 0.20 TCGA-43-3394-01 11 6292037 6292037 G T CCKBR Intron 0.16 TCGA-43-3394-01 11 65402891 65402891 G A PCNXL3 Missense_Mutation p.R1719Q 0.30 deleterious(0) possibly_damaging(0.684) TCGA-43-3394-01 11 66453725 66453725 G T SPTBN2 Intron 0.49 TCGA-43-3394-01 11 75160079 75160079 C A GDPD5 Missense_Mutation p.M219I 0.38 tolerated(0.15) probably_damaging(0.993) TCGA-43-3394-01 11 7982580 7982580 A G NLRP10 Silent p.G193G 0.33 TCGA-43-3394-01 12 10337966 10337966 T C TMEM52B Missense_Mutation p.W26R 0.17 deleterious(0) possibly_damaging(0.847) TCGA-43-3394-01 12 107155033 107155033 G T RFX4 Missense_Mutation p.R674I 0.29 deleterious_low_confidence(0.01) benign(0.036) TCGA-43-3394-01 12 12022436 12022436 G T ETV6 Missense_Mutation p.R181L 0.15 tolerated(0.1) possibly_damaging(0.764) TCGA-43-3394-01 12 120802555 120802555 C T MSI1 Missense_Mutation p.D91N 0.27 deleterious(0) probably_damaging(0.998) TCGA-43-3394-01 12 122413496 122413496 G A WDR66 Missense_Mutation p.D971N 0.11 tolerated(0.12) benign(0.148) TCGA-43-3394-01 12 133398645 133398645 G T GOLGA3 Missense_Mutation p.P24T 0.34 tolerated_low_confidence(0.1) benign(0.392) TCGA-43-3394-01 12 2055431 2055431 T C DCP1B Missense_Mutation p.I599V 0.82 tolerated(0.08) benign(0.123) TCGA-43-3394-01 12 21331930 21331930 G T SLCO1B1 Missense_Mutation p.V235L 0.56 deleterious(0) probably_damaging(0.992) TCGA-43-3394-01 12 39751147 39751147 A T KIF21A Silent p.R436R 0.09 TCGA-43-3394-01 12 43824220 43824220 C A ADAMTS20 Nonsense_Mutation p.E1106* 0.65 TCGA-43-3394-01 12 49431879 49431879 C A KMT2D Missense_Mutation p.R3087L 0.44 possibly_damaging(0.494) TCGA-43-3394-01 12 53565181 53565181 G A CSAD Nonsense_Mutation p.Q193* 0.52 TCGA-43-3394-01 12 55688725 55688725 G T OR6C6 Missense_Mutation p.Q98K 0.30 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-43-3394-01 12 56547669 56547669 C A MYL6B 5'UTR 0.21 TCGA-43-3394-01 12 57994176 57994176 G A PIP4K2C Missense_Mutation p.E257K 0.43 tolerated(0.1) possibly_damaging(0.808) TCGA-43-3394-01 12 80615994 80615994 G T OTOGL Missense_Mutation p.C144F 0.33 deleterious(0) probably_damaging(0.955) TCGA-43-3394-01 13 36026233 36026233 G T NBEA Silent p.T2103T 0.58 TCGA-43-3394-01 14 103452886 103452887 - G CDC42BPB Frame_Shift_Ins p.V210Rfs*9 0.27 TCGA-43-3394-01 14 21269781 21269781 A G RNASE1 Silent p.D149D 0.61 TCGA-43-3394-01 14 22180585 22180585 G A TRAV2 Nonsense_Mutation p.W11* 0.51 TCGA-43-3394-01 14 52472511 52472511 G A NID2 Missense_Mutation p.P1354L 0.55 deleterious(0) probably_damaging(0.999) TCGA-43-3394-01 14 79423668 79423668 A T NRXN3 Missense_Mutation p.S414C 0.25 deleterious(0) probably_damaging(0.91) TCGA-43-3394-01 15 23889145 23889145 G T MAGEL2 Missense_Mutation p.R646S 0.33 deleterious_low_confidence(0.01) benign(0.097) TCGA-43-3394-01 15 34656452 34656452 T A LPCAT4 Silent p.R178R 0.34 TCGA-43-3394-01 15 43714111 43714111 C A TP53BP1 Missense_Mutation p.G1348W 0.33 deleterious(0) probably_damaging(1) TCGA-43-3394-01 15 49303951 49303951 G - SECISBP2L Frame_Shift_Del p.P614Hfs*12 0.21 TCGA-43-3394-01 15 52564918 52564918 G A MYO5C Silent p.A203A 0.09 TCGA-43-3394-01 15 58902590 58902590 C T ADAM10 Missense_Mutation p.R644Q 0.38 deleterious(0) benign(0.011) TCGA-43-3394-01 15 72968594 72968594 C A HIGD2B Missense_Mutation p.R41L 0.43 tolerated(0.05) benign(0.021) TCGA-43-3394-01 15 81585143 81585143 C G IL16 Missense_Mutation p.S556C 0.12 tolerated(0.2) possibly_damaging(0.502) TCGA-43-3394-01 15 90347487 90347487 G T ANPEP Missense_Mutation p.H392Q 0.46 deleterious(0) probably_damaging(0.999) TCGA-43-3394-01 16 11001706 11001706 A T CIITA Missense_Mutation p.Q786L 0.29 deleterious(0) benign(0.221) TCGA-43-3394-01 16 1584307 1584307 G A TMEM204 Missense_Mutation p.V11M 0.11 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-43-3394-01 16 24801321 24801321 C A TNRC6A Missense_Mutation p.P453Q 0.40 deleterious(0) probably_damaging(0.999) TCGA-43-3394-01 16 30771646 30771646 G T C16orf93 Missense_Mutation p.A143E 0.15 deleterious(0.01) possibly_damaging(0.906) TCGA-43-3394-01 16 46615562 46615562 C T SHCBP1 3'UTR 0.20 TCGA-43-3394-01 16 4934186 4934186 C A PPL Silent p.L1490L 0.11 TCGA-43-3394-01 16 81953096 81953096 G T PLCG2 Missense_Mutation p.G688C 0.33 deleterious(0) benign(0.414) TCGA-43-3394-01 16 81953097 81953097 G T PLCG2 Missense_Mutation p.G688V 0.30 deleterious(0) probably_damaging(0.936) TCGA-43-3394-01 17 10360876 10360876 G T MYH4 Silent p.A586A 0.57 TCGA-43-3394-01 17 29653203 29653203 A T NF1 Missense_Mutation p.E1734V 0.44 deleterious(0) benign(0.228) TCGA-43-3394-01 17 48266736 48266736 A G COL1A1 Splice_Site p.X943_splice 0.29 TCGA-43-3394-01 17 53851197 53851197 G T PCTP Missense_Mutation p.R151L 0.48 deleterious(0) probably_damaging(1) TCGA-43-3394-01 17 64299001 64299001 C T PRKCA Missense_Mutation p.T11M 0.44 tolerated_low_confidence(0.05) benign(0.174) TCGA-43-3394-01 17 7576904 7576904 G - TP53 Frame_Shift_Del p.S315Lfs*30 0.39 TCGA-43-3394-01 17 78237532 78237532 T G RNF213 Missense_Mutation p.C18G 0.29 probably_damaging(0.991) TCGA-43-3394-01 18 13752338 13752338 A G RNMT Missense_Mutation p.N424S 0.39 tolerated(0.47) benign(0.023) TCGA-43-3394-01 18 44560772 44560772 A T TCEB3B Silent p.A288A 0.54 TCGA-43-3394-01 18 70502399 70502399 A G NETO1 Intron 0.42 TCGA-43-3394-01 19 14720890 14720890 A G CLEC17A Missense_Mutation p.E340G 0.25 tolerated(0.66) benign(0.348) TCGA-43-3394-01 19 14883240 14883240 C T EMR2 Missense_Mutation p.G90E 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-43-3394-01 19 14884827 14884827 T A EMR2 Missense_Mutation p.N41I 0.17 deleterious(0) probably_damaging(0.948) TCGA-43-3394-01 19 18186558 18186558 C - IL12RB1 Splice_Site p.X234_splice 0.30 TCGA-43-3394-01 19 30505964 30505964 A G URI1 Silent p.Q532Q 0.26 TCGA-43-3394-01 19 30935022 30935022 C A ZNF536 Missense_Mutation p.L185M 0.32 deleterious(0.02) probably_damaging(0.998) TCGA-43-3394-01 19 33902627 33902627 C A PEPD Nonsense_Mutation p.G257* 0.36 TCGA-43-3394-01 19 35435155 35435155 G T ZNF30 Nonsense_Mutation p.E430* 0.54 TCGA-43-3394-01 19 872083 872083 C A MED16 Silent p.R647R 0.43 TCGA-43-3394-01 1 112999055 112999055 C A CTTNBP2NL Missense_Mutation p.T314K 0.24 deleterious(0) probably_damaging(0.997) TCGA-43-3394-01 1 142803442 142803442 A G RP11-423O2.5 RNA 0.09 TCGA-43-3394-01 1 144882799 144882799 C A PDE4DIP Nonsense_Mutation p.E1074* 0.47 TCGA-43-3394-01 1 162326836 162326837 AG - NOS1AP Frame_Shift_Del p.E284Dfs*40 0.15 TCGA-43-3394-01 1 16809932 16809932 C T CROCCP3 RNA 0.50 TCGA-43-3394-01 1 197069780 197069780 C A ASPM Missense_Mutation p.Q2867H 0.71 deleterious(0.05) probably_damaging(0.996) TCGA-43-3394-01 1 205496919 205496919 C T CDK18 Intron 0.49 TCGA-43-3394-01 1 248343383 248343383 G C OR2M2 Silent p.L32L 0.52 TCGA-43-3394-01 1 27105921 27105921 G A ARID1A Nonsense_Mutation p.W1844* 0.67 TCGA-43-3394-01 1 44804965 44804965 C A ERI3 Missense_Mutation p.A81S 0.52 tolerated_low_confidence(0.13) benign(0.102) TCGA-43-3394-01 1 6169927 6169927 C T CHD5 Missense_Mutation p.A1836T 0.60 deleterious(0.01) probably_damaging(0.928) TCGA-43-3394-01 1 62190845 62190845 G C TM2D1 Missense_Mutation p.P45R 0.23 tolerated_low_confidence(0.62) benign(0) TCGA-43-3394-01 1 67147840 67147840 G A SGIP1 Missense_Mutation p.R368H 0.09 deleterious_low_confidence(0.01) probably_damaging(0.976) TCGA-43-3394-01 20 1277858 1277858 T A SNPH Silent p.S40S 0.39 TCGA-43-3394-01 20 35668651 35668651 C G RBL1 Missense_Mutation p.G603A 0.57 tolerated(0.56) benign(0.002) TCGA-43-3394-01 20 42825791 42825791 G C OSER1 Missense_Mutation p.F260L 0.54 deleterious(0.02) benign(0.005) TCGA-43-3394-01 21 38568325 38568325 C G TTC3 Missense_Mutation p.P1856R 0.21 deleterious(0) probably_damaging(1) TCGA-43-3394-01 21 39672221 39672221 T C KCNJ15 Silent p.S346S 0.38 TCGA-43-3394-01 21 47746346 47746346 A G PCNT Missense_Mutation p.K37R 0.40 possibly_damaging(0.636) TCGA-43-3394-01 22 43528981 43528981 C A MCAT 3'UTR 0.46 TCGA-43-3394-01 22 47085971 47085971 G T CERK Missense_Mutation p.H487N 0.31 tolerated(0.22) benign(0.002) TCGA-43-3394-01 2 129026360 129026360 C A HS6ST1 Missense_Mutation p.W204C 0.26 deleterious(0) probably_damaging(0.999) TCGA-43-3394-01 2 137990482 137990483 - C THSD7B Frame_Shift_Ins p.S646* 0.33 TCGA-43-3394-01 2 138030108 138030108 G A THSD7B Missense_Mutation p.A758T 0.33 tolerated(0.26) possibly_damaging(0.682) TCGA-43-3394-01 2 142004811 142004811 A T LRP1B Silent p.S192S 0.28 TCGA-43-3394-01 2 149240909 149240909 A G MBD5 Missense_Mutation p.S917G 0.39 deleterious(0.01) unknown(0) TCGA-43-3394-01 2 168106268 168106268 T C XIRP2 Missense_Mutation p.I2789T 0.44 benign(0.001) TCGA-43-3394-01 2 179393645 179393645 T C TTN Silent p.A35611A 0.24 TCGA-43-3394-01 2 179571295 179571295 T C TTN Missense_Mutation p.Y9769C 0.55 TCGA-43-3394-01 2 228681836 228681836 C T CCL20 3'UTR 0.16 TCGA-43-3394-01 2 7137169 7137169 T C RNF144A Missense_Mutation p.C38R 0.34 deleterious(0) probably_damaging(0.999) TCGA-43-3394-01 2 73826590 73826590 A C ALMS1 Silent p.S3869S 0.10 TCGA-43-3394-01 2 86371456 86371457 - T IMMT Frame_Shift_Ins p.V738Sfs*43 0.11 TCGA-43-3394-01 2 90043658 90043658 C A IGKV2D-24 Missense_Mutation p.L8M 0.86 deleterious(0.01) probably_damaging(0.981) TCGA-43-3394-01 2 99454634 99454634 C T KIAA1211L Missense_Mutation p.V63I 0.19 deleterious(0.02) benign(0.198) TCGA-43-3394-01 3 100447602 100447602 C G TFG Silent p.L105L 0.24 TCGA-43-3394-01 3 113377278 113377278 G A KIAA2018 Missense_Mutation p.A1084V 0.30 benign(0.242) TCGA-43-3394-01 3 140281051 140281051 G T CLSTN2 Missense_Mutation p.D705Y 0.28 deleterious(0) possibly_damaging(0.497) TCGA-43-3394-01 3 143412129 143412129 A G SLC9A9 Missense_Mutation p.V185A 0.15 deleterious(0.03) possibly_damaging(0.56) TCGA-43-3394-01 3 158323060 158323060 A G MLF1 3'UTR 0.21 TCGA-43-3394-01 3 159995188 159995188 T G IFT80 Missense_Mutation p.S669R 0.37 tolerated(0.26) possibly_damaging(0.723) TCGA-43-3394-01 3 168810803 168810803 C A MECOM Missense_Mutation p.R913L 0.05 deleterious(0) probably_damaging(0.917) TCGA-43-3394-01 3 46307342 46307343 - A CCR3 Frame_Shift_Ins p.Y256Vfs*38 0.49 TCGA-43-3394-01 3 51747147 51747147 T C GRM2 Missense_Mutation p.V370A 0.57 tolerated(0.63) benign(0.002) TCGA-43-3394-01 3 99567816 99567816 G A FILIP1L Missense_Mutation p.L902F 0.49 deleterious(0) probably_damaging(0.992) TCGA-43-3394-01 4 155336 155336 A T ZNF718 RNA 0.70 TCGA-43-3394-01 4 164247222 164247222 A C NPY1R Missense_Mutation p.I162S 0.59 deleterious(0) possibly_damaging(0.904) TCGA-43-3394-01 4 183664445 183664445 G C TENM3 Missense_Mutation p.D1168H 0.60 tolerated(0.14) benign(0.099) TCGA-43-3394-01 4 187541799 187541799 G A FAT1 Nonsense_Mutation p.Q1981* 0.55 TCGA-43-3394-01 4 20598038 20598038 T C SLIT2 Silent p.S1107S 0.61 TCGA-43-3394-01 4 23803870 23803870 G A PPARGC1A Silent p.C706C 0.58 TCGA-43-3394-01 4 42445668 42445668 C A ATP8A1 Missense_Mutation p.G1013W 0.41 deleterious(0) possibly_damaging(0.907) TCGA-43-3394-01 4 46043218 46043218 A T GABRG1 Silent p.S395S 0.32 TCGA-43-3394-01 5 110835571 110835571 T A STARD4 3'UTR 0.70 TCGA-43-3394-01 5 112174187 112174187 A G APC Missense_Mutation p.S966G 0.59 probably_damaging(0.995) TCGA-43-3394-01 5 113831666 113831666 C A KCNN2 Silent p.T509T 0.51 TCGA-43-3394-01 5 128320972 128320972 C G SLC27A6 Missense_Mutation p.H210D 0.49 deleterious(0) benign(0.158) TCGA-43-3394-01 5 131296315 131296315 C T ACSL6 Splice_Site p.X620_splice 0.50 TCGA-43-3394-01 5 140517005 140517005 C T PCDHB5 Silent p.D663D 0.62 TCGA-43-3394-01 5 157159978 157159978 G A THG1L Silent p.V98V 0.64 TCGA-43-3394-01 5 158522656 158522656 A G EBF1 Missense_Mutation p.V128A 0.32 deleterious(0.04) possibly_damaging(0.713) TCGA-43-3394-01 5 179155595 179155595 G T CANX Missense_Mutation p.D577Y 0.65 deleterious(0) possibly_damaging(0.907) TCGA-43-3394-01 5 2752747 2752747 C G C5orf38 Nonsense_Mutation p.S71* 0.46 TCGA-43-3394-01 5 40998213 40998213 C A MROH2B Missense_Mutation p.A1567S 0.23 deleterious(0.03) probably_damaging(0.924) TCGA-43-3394-01 5 72864310 72864310 A G UTP15 Silent p.A83A 0.67 TCGA-43-3394-01 5 79854626 79854626 A G ANKRD34B Missense_Mutation p.S405P 0.63 tolerated(0.34) benign(0.008) TCGA-43-3394-01 5 88119733 88119733 C A MEF2C 5'UTR 0.61 TCGA-43-3394-01 6 106967119 106967119 C A AIM1 Missense_Mutation p.T271N 0.09 tolerated(1) benign(0.005) TCGA-43-3394-01 6 133035147 133035147 C - VNN1 Frame_Shift_Del p.A10Qfs*32 0.25 TCGA-43-3394-01 6 30131465 30131465 C T TRIM15 Missense_Mutation p.P2S 0.31 tolerated(0.3) benign(0.014) TCGA-43-3394-01 6 32046816 32046816 C T RNA5SP206 5'Flank 0.17 TCGA-43-3394-01 6 32709205 32709205 C A HLA-DQA2 5'UTR 0.54 TCGA-43-3394-01 6 41738856 41738856 G - FRS3 Frame_Shift_Del p.P327Hfs*64 0.35 TCGA-43-3394-01 6 76744468 76744468 A G IMPG1 Missense_Mutation p.F113S 0.16 deleterious(0) probably_damaging(0.999) TCGA-43-3394-01 6 90428865 90428865 T A MDN1 Missense_Mutation p.Y2016F 0.24 benign(0.006) TCGA-43-3394-01 7 100350584 100350584 A G ZAN Silent p.P952P 0.11 TCGA-43-3394-01 7 106830702 106830702 C T HBP1 Missense_Mutation p.P336L 0.41 deleterious(0) probably_damaging(0.997) TCGA-43-3394-01 7 107399420 107399420 A G CBLL1 Missense_Mutation p.N425D 0.30 deleterious(0.02) probably_damaging(0.987) TCGA-43-3394-01 7 107756483 107756483 C G LAMB4 Missense_Mutation p.R53T 0.34 tolerated(0.08) benign(0.124) TCGA-43-3394-01 7 141536910 141536910 A T PRSS37 Splice_Site p.X189_splice 0.42 TCGA-43-3394-01 7 18767237 18767237 C T HDAC9 Missense_Mutation p.S589F 0.15 deleterious(0.02) benign(0.001) TCGA-43-3394-01 7 21912964 21912964 A C DNAH11 Silent p.R4021R 0.36 TCGA-43-3394-01 7 38725419 38725419 C A FAM183B Missense_Mutation p.A63S 0.54 tolerated(0.3) benign(0.402) TCGA-43-3394-01 7 41739630 41739630 C G INHBA Missense_Mutation p.E115Q 0.07 tolerated(0.19) probably_damaging(0.977) TCGA-43-3394-01 7 48312439 48312439 A G ABCA13 Missense_Mutation p.H1059R 0.46 possibly_damaging(0.828) TCGA-43-3394-01 7 63727064 63727064 C G ZNF679 Silent p.P351P 0.17 TCGA-43-3394-01 7 8198264 8198264 G T ICA1 Missense_Mutation p.L200I 0.46 tolerated(0.18) possibly_damaging(0.507) TCGA-43-3394-01 7 84702397 84702397 T A SEMA3D Missense_Mutation p.T126S 0.20 tolerated(0.25) benign(0.111) TCGA-43-3394-01 8 101076179 101076181 CTT - RGS22 In_Frame_Del p.E272del 0.66 TCGA-43-3394-01 8 124340506 124340506 C G ATAD2 Missense_Mutation p.L1264F 0.16 tolerated(0.4) benign(0.068) TCGA-43-3394-01 8 27315846 27315846 G T PTK2B Silent p.L950L 0.53 TCGA-43-3394-01 8 86572811 86572811 G C REXO1L1P 3'UTR 0.25 TCGA-43-3394-01 9 129184187 129184187 G A MVB12B Silent p.T239T 0.34 TCGA-43-3394-01 9 130145740 130145740 T C GARNL3 Missense_Mutation p.C729R 0.52 tolerated(0.06) possibly_damaging(0.632) TCGA-43-3394-01 9 137300876 137300876 A T RXRA Missense_Mutation p.N174I 0.29 deleterious(0.03) probably_damaging(0.948) TCGA-43-3394-01 9 139641878 139641878 G T LCN6 Missense_Mutation p.H76Q 0.48 tolerated(0.52) benign(0.007) TCGA-43-3394-01 9 14823222 14823222 C T FREM1 Missense_Mutation p.G758D 0.61 deleterious(0) probably_damaging(0.996) TCGA-43-3394-01 9 15047998 15047998 C G RP11-54D18.3 RNA 0.62 TCGA-43-3394-01 9 90500689 90500689 G A SPATA31E1 Silent p.G429G 0.28 TCGA-43-3394-01 X 10096089 10096089 A T WWC3 Missense_Mutation p.H723L 0.82 tolerated(0.18) benign(0.001) TCGA-43-3394-01 X 104464730 104464730 G T TEX13A Missense_Mutation p.Q118K 0.65 tolerated(0.25) benign(0.027) TCGA-43-3394-01 X 115593951 115593951 G A CT83 Missense_Mutation p.R23C 0.65 tolerated(0.07) probably_damaging(0.965) TCGA-43-3394-01 X 128723821 128723821 G T OCRL Splice_Site p.X824_splice 0.72 TCGA-43-3394-01 X 134494173 134494173 G T ZNF449 Missense_Mutation p.E243D 0.77 tolerated(0.13) benign(0.012) TCGA-43-3394-01 X 138699860 138699860 G T MCF2 Missense_Mutation p.L331I 0.67 tolerated(0.38) benign(0.391) TCGA-43-3394-01 X 142718645 142718645 T A SLITRK4 Nonsense_Mutation p.K94* 0.64 TCGA-43-3394-01 X 150911817 150911817 A G CNGA2 Missense_Mutation p.Y281C 0.66 deleterious(0.02) probably_damaging(1) TCGA-43-3394-01 X 155235767 155235767 G C IL9R Missense_Mutation p.W267C 0.29 tolerated(0.11) possibly_damaging(0.698) TCGA-43-3394-01 X 47464427 47464427 C T SYN1 Missense_Mutation p.E242K 0.80 deleterious(0.04) benign(0.24) TCGA-43-3394-01 X 64137714 64137714 G T ZC4H2 Silent p.A208A 0.41 TCGA-43-3394-01 X 84362449 84362449 G C SATL1 Missense_Mutation p.P509R 0.66 deleterious(0.03) probably_damaging(0.986) TCGA-43-3920-01 10 112262559 112262559 G A DUSP5 Missense_Mutation p.E154K 0.35 tolerated(0.5) benign(0.175) TCGA-43-3920-01 10 115891764 115891764 T C C10orf118 Missense_Mutation p.Q612R 0.32 deleterious(0.04) benign(0.363) TCGA-43-3920-01 10 115963163 115963163 T G TDRD1 Missense_Mutation p.F273C 0.31 deleterious(0) probably_damaging(0.987) TCGA-43-3920-01 10 122666322 122666322 G A WDR11 Missense_Mutation p.E1158K 0.30 deleterious(0.01) benign(0.025) TCGA-43-3920-01 10 122666349 122666349 G T WDR11 Nonsense_Mutation p.E1167* 0.29 TCGA-43-3920-01 10 27688069 27688069 C T PTCHD3 Silent p.A486A 0.62 TCGA-43-3920-01 10 82098168 82098168 A G DYDC1 Intron 0.42 TCGA-43-3920-01 10 89717708 89717708 C T PTEN Nonsense_Mutation p.Q245* 0.54 TCGA-43-3920-01 11 107299812 107299812 C A CWF19L2 Missense_Mutation p.K382N 0.37 tolerated(0.13) benign(0.015) TCGA-43-3920-01 11 123755245 123755245 G C TMEM225 Missense_Mutation p.Q94E 0.44 tolerated(0.1) benign(0) TCGA-43-3920-01 11 123901086 123901086 C A OR10G8 Missense_Mutation p.P253T 0.14 deleterious(0) probably_damaging(0.956) TCGA-43-3920-01 11 124294600 124294600 G T OR8B4 Missense_Mutation p.H56Q 0.36 deleterious_low_confidence(0.02) probably_damaging(0.991) TCGA-43-3920-01 11 124763909 124763909 T G ROBO4 Missense_Mutation p.S451R 0.50 tolerated(0.11) benign(0.005) TCGA-43-3920-01 11 125472288 125472288 G A STT3A Silent p.L80L 0.18 TCGA-43-3920-01 11 1467072 1467072 C A BRSK2 Missense_Mutation p.S433R 0.30 deleterious(0.01) probably_damaging(0.967) TCGA-43-3920-01 11 18956283 18956283 C A MRGPRX1 Nonsense_Mutation p.G17* 0.05 TCGA-43-3920-01 11 2356566 2356568 TTC - CD81-AS1 Intron 0.36 TCGA-43-3920-01 11 26584733 26584733 G A MUC15 Silent p.Y285Y 0.45 TCGA-43-3920-01 11 30974037 30974037 C T DCDC1 Silent p.K890K 0.33 TCGA-43-3920-01 11 33564652 33564652 G T KIAA1549L Missense_Mutation p.A218S 0.45 deleterious_low_confidence(0.02) benign(0.26) TCGA-43-3920-01 11 43775641 43775641 G T HSD17B12 Missense_Mutation p.D85Y 0.18 deleterious(0.01) possibly_damaging(0.824) TCGA-43-3920-01 11 44940762 44940762 C T TSPAN18 Intron 0.43 TCGA-43-3920-01 11 48346875 48346875 G C OR4C3 Missense_Mutation p.G128A 0.05 tolerated(1) benign(0.034) TCGA-43-3920-01 11 49207291 49207291 A T FOLH1 Silent p.G252G 0.14 TCGA-43-3920-01 11 5080752 5080752 C G OR52E2 Missense_Mutation p.V36L 0.13 tolerated(0.1) benign(0.304) TCGA-43-3920-01 11 55032605 55032605 C G TRIM48 Missense_Mutation p.L92V 0.15 deleterious(0.05) benign(0.073) TCGA-43-3920-01 11 55579833 55579833 G T OR5L1 Silent p.V297V 0.17 TCGA-43-3920-01 11 55703750 55703750 C A OR5I1 Missense_Mutation p.G43W 0.27 tolerated(0.06) probably_damaging(0.971) TCGA-43-3920-01 11 55798323 55798323 C A OR5AS1 Nonsense_Mutation p.C143* 0.40 TCGA-43-3920-01 11 55873110 55873110 C T OR8H2 Silent p.L198L 0.42 TCGA-43-3920-01 11 55944669 55944669 C T OR5J2 Silent p.T192T 0.29 TCGA-43-3920-01 11 5969164 5969164 C T OR56A3 Silent p.V196V 0.09 TCGA-43-3920-01 11 60156870 60156870 G A MS4A7 Missense_Mutation p.S116N 0.22 tolerated(0.07) benign(0.393) TCGA-43-3920-01 11 60183336 60183336 G T MS4A14 Missense_Mutation p.A332S 0.24 tolerated(0.3) benign(0.001) TCGA-43-3920-01 11 76831861 76831861 G T CAPN5 Nonsense_Mutation p.E465* 0.10 TCGA-43-3920-01 11 89069063 89069063 T A NOX4 Silent p.G522G 0.10 TCGA-43-3920-01 11 9167295 9167295 T C DENND5A Silent p.P975P 0.47 TCGA-43-3920-01 11 95713100 95713100 G A MAML2 Missense_Mutation p.S828F 0.52 unknown(0) TCGA-43-3920-01 12 101368626 101368626 A T ANO4 Missense_Mutation p.R152S 0.23 tolerated(0.2) benign(0.138) TCGA-43-3920-01 12 104030921 104030921 G C STAB2 Missense_Mutation p.E206Q 0.47 tolerated(0.37) probably_damaging(0.998) TCGA-43-3920-01 12 13220127 13220127 C G KIAA1467 Missense_Mutation p.Q347E 0.39 deleterious(0.03) benign(0.009) TCGA-43-3920-01 12 19440426 19440426 G A PLEKHA5 Missense_Mutation p.R600K 0.22 deleterious(0) probably_damaging(0.989) TCGA-43-3920-01 12 22635541 22635541 C A C2CD5 Nonsense_Mutation p.G563* 0.48 TCGA-43-3920-01 12 2613601 2613601 G T CACNA1C Intron 0.10 TCGA-43-3920-01 12 2943895 2943895 G C NRIP2 Silent p.L85L 0.21 TCGA-43-3920-01 12 319118 319118 G T SLC6A12 Missense_Mutation p.P12H 0.30 tolerated(0.09) benign(0.002) TCGA-43-3920-01 12 40926074 40926074 C T MUC19 Intron 0.50 TCGA-43-3920-01 12 44782229 44782229 C A TMEM117 Nonsense_Mutation p.S440* 0.40 TCGA-43-3920-01 12 48090172 48090172 G A RPAP3 Silent p.F144F 0.24 TCGA-43-3920-01 12 49048747 49048748 - A KANSL2 Frame_Shift_Ins p.A442Cfs*2 0.40 TCGA-43-3920-01 12 54109789 54109789 C G CALCOCO1 Missense_Mutation p.E350Q 0.18 tolerated(0.07) probably_damaging(0.934) TCGA-43-3920-01 12 57605310 57605310 G T LRP1 Missense_Mutation p.V4378F 0.38 benign(0.012) TCGA-43-3920-01 12 57662127 57662127 C T R3HDM2 Silent p.V649V 0.20 TCGA-43-3920-01 12 70918334 70918334 A T PTPRB Missense_Mutation p.V2181D 0.23 deleterious(0) probably_damaging(0.999) TCGA-43-3920-01 12 77208951 77208951 G C ZDHHC17 Missense_Mutation p.G190A 0.50 deleterious(0.04) probably_damaging(0.999) TCGA-43-3920-01 12 88420267 88420267 C G C12orf50 Missense_Mutation p.S44T 0.28 tolerated(0.05) possibly_damaging(0.447) TCGA-43-3920-01 12 95611630 95611630 A G VEZT Missense_Mutation p.T2A 0.45 deleterious(0) benign(0.11) TCGA-43-3920-01 13 110827678 110827678 C A COL4A1 Missense_Mutation p.G1029C 0.64 probably_damaging(1) TCGA-43-3920-01 13 113768231 113768231 C T F7 Silent p.I129I 0.50 TCGA-43-3920-01 13 39587671 39587671 A T PROSER1 Missense_Mutation p.V573D 0.51 tolerated_low_confidence(0.09) benign(0.369) TCGA-43-3920-01 13 45148757 45148757 C A TSC22D1 Missense_Mutation p.G485V 0.38 deleterious(0.01) probably_damaging(1) TCGA-43-3920-01 13 49281313 49281313 C G CYSLTR2 Silent p.V120V 0.40 TCGA-43-3920-01 13 52971859 52971859 C T THSD1 Missense_Mutation p.E177K 0.41 tolerated(0.24) benign(0.011) TCGA-43-3920-01 13 77672952 77672952 C T MYCBP2 Silent p.L2741L 0.45 TCGA-43-3920-01 13 92380910 92380910 A G GPC5 Missense_Mutation p.N382S 0.44 tolerated(0.89) benign(0.034) TCGA-43-3920-01 14 103442072 103442072 C G CDC42BPB Missense_Mutation p.E486Q 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-43-3920-01 14 105344820 105344820 C T CEP170B Silent p.V105V 0.50 TCGA-43-3920-01 14 105405698 105405698 T A AHNAK2 Missense_Mutation p.M5364L 0.21 benign(0.029) TCGA-43-3920-01 14 20711715 20711715 G A OR11H4 Silent p.L255L 0.43 TCGA-43-3920-01 14 23884939 23884939 C G MYH7 Missense_Mutation p.E1686Q 0.10 deleterious(0.01) probably_damaging(0.985) TCGA-43-3920-01 14 24772988 24772988 C G NOP9 Silent p.L445L 0.27 TCGA-43-3920-01 14 35240723 35240723 G C BAZ1A Missense_Mutation p.P1099A 0.26 deleterious(0) probably_damaging(0.956) TCGA-43-3920-01 14 36004316 36004316 C A INSM2 Silent p.I286I 0.33 TCGA-43-3920-01 14 56085932 56085932 C A KTN1 Missense_Mutation p.L289M 0.20 tolerated(0.22) benign(0.26) TCGA-43-3920-01 14 61517235 61517235 G C SLC38A6 Missense_Mutation p.V311L 0.15 deleterious(0.02) probably_damaging(0.944) TCGA-43-3920-01 14 76948971 76948971 C A ESRRB Missense_Mutation p.A219D 0.22 deleterious(0.02) possibly_damaging(0.742) TCGA-43-3920-01 14 77492209 77492209 C T IRF2BPL Missense_Mutation p.G643S 0.50 tolerated(0.25) unknown(0) TCGA-43-3920-01 14 81302659 81302659 A C CEP128 Missense_Mutation p.L316R 0.11 deleterious(0) probably_damaging(0.994) TCGA-43-3920-01 14 92357676 92357677 - A FBLN5 Frame_Shift_Ins p.D170* 0.19 TCGA-43-3920-01 15 20489466 20489466 C A CHEK2P2 RNA 0.12 TCGA-43-3920-01 15 20490545 20490545 G A CHEK2P2 RNA 0.08 TCGA-43-3920-01 15 25334021 25334021 C G SNORD116-20 RNA 0.14 TCGA-43-3920-01 15 25334030 25334030 C G SNORD116-20 RNA 0.13 TCGA-43-3920-01 15 25440102 25440102 G T SNORD115-14 RNA 0.35 TCGA-43-3920-01 15 31294476 31294476 T C TRPM1 Missense_Mutation p.Q1493R 0.40 tolerated_low_confidence(0.54) benign(0) TCGA-43-3920-01 15 50158593 50158593 A C ATP8B4 Missense_Mutation p.M1039R 0.19 deleterious(0.01) benign(0.265) TCGA-43-3920-01 15 54707216 54707216 C T UNC13C Silent p.A1628A 0.11 TCGA-43-3920-01 15 66850219 66850219 G T LCTL Missense_Mutation p.L255M 0.45 tolerated(0.3) benign(0.305) TCGA-43-3920-01 15 68624279 68624279 C T ITGA11 Missense_Mutation p.G563E 0.33 deleterious(0) probably_damaging(0.973) TCGA-43-3920-01 15 83358145 83358145 C T AP3B2 Missense_Mutation p.M58I 0.36 deleterious(0.02) possibly_damaging(0.897) TCGA-43-3920-01 15 85407730 85407730 G A ALPK3 Silent p.L1721L 0.31 TCGA-43-3920-01 15 85661024 85661024 A T PDE8A Missense_Mutation p.D563V 0.35 deleterious(0) probably_damaging(1) TCGA-43-3920-01 15 98509239 98509239 T C ARRDC4 Silent p.V163V 0.11 TCGA-43-3920-01 16 11362982 11362982 G C TNP2 Missense_Mutation p.S46R 0.20 tolerated(0.45) possibly_damaging(0.637) TCGA-43-3920-01 16 15690595 15690595 G C KIAA0430 Silent p.V1728V 0.43 TCGA-43-3920-01 16 18847402 18847402 C A SMG1 Missense_Mutation p.C2637F 0.20 deleterious(0) possibly_damaging(0.758) TCGA-43-3920-01 16 19027784 19027784 G C TMC7 Missense_Mutation p.E108D 0.13 deleterious(0.05) possibly_damaging(0.573) TCGA-43-3920-01 16 19548053 19548053 C G CCP110 Missense_Mutation p.I354M 0.21 deleterious(0.01) probably_damaging(0.991) TCGA-43-3920-01 16 24372945 24372945 T C CACNG3 Missense_Mutation p.S237P 0.14 deleterious(0.02) possibly_damaging(0.616) TCGA-43-3920-01 16 3349210 3349210 C G TIGD7 Missense_Mutation p.E469Q 0.40 tolerated(0.11) benign(0.007) TCGA-43-3920-01 16 4924300 4924300 G A UBN1 Missense_Mutation p.G630E 0.18 tolerated(0.33) benign(0.195) TCGA-43-3920-01 16 56673832 56673832 G C MT1A Silent p.G52G 0.24 TCGA-43-3920-01 16 69874130 69874130 C T WWP2 Silent p.L148L 0.17 TCGA-43-3920-01 16 722740 722740 C T RHOT2 Missense_Mutation p.S481L 0.35 tolerated(0.17) benign(0.002) TCGA-43-3920-01 16 77398203 77398203 G C ADAMTS18 Nonsense_Mutation p.S285* 0.17 TCGA-43-3920-01 17 10428145 10428145 G T MYH2 Missense_Mutation p.Q1634K 0.69 deleterious(0.01) possibly_damaging(0.744) TCGA-43-3920-01 17 11603086 11603086 C G DNAH9 Silent p.A1637A 0.18 TCGA-43-3920-01 17 2995592 2995592 C T OR1D2 Silent p.K233K 0.12 TCGA-43-3920-01 17 55948728 55948728 G T CUEDC1 Silent p.R263R 0.20 TCGA-43-3920-01 17 60788625 60788625 C G MARCH10 Missense_Mutation p.M765I 0.16 deleterious(0.03) benign(0.024) TCGA-43-3920-01 17 66033297 66033297 T A KPNA2 Missense_Mutation p.F17I 0.70 deleterious(0) possibly_damaging(0.858) TCGA-43-3920-01 17 67119511 67119511 C G ABCA6 Missense_Mutation p.L435F 0.56 deleterious(0.01) benign(0.162) TCGA-43-3920-01 17 74150388 74150388 C T RNF157 Missense_Mutation p.E596K 0.76 deleterious_low_confidence(0.01) benign(0.22) TCGA-43-3920-01 17 7578271 7578271 T A TP53 Missense_Mutation p.H193L 0.56 deleterious(0) probably_damaging(1) TCGA-43-3920-01 18 28587056 28587056 C A DSC3 Missense_Mutation p.D569Y 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-43-3920-01 18 28934414 28934414 G T DSG1 Missense_Mutation p.G752V 0.34 deleterious(0) probably_damaging(0.999) TCGA-43-3920-01 18 59166620 59166620 G C CDH20 Missense_Mutation p.E150Q 0.34 tolerated(0.05) probably_damaging(0.995) TCGA-43-3920-01 18 59483298 59483298 C A RNF152 Silent p.V133V 0.45 TCGA-43-3920-01 18 6859824 6859824 C G ARHGAP28 Silent p.L59L 0.13 TCGA-43-3920-01 18 8113592 8113592 G A PTPRM Silent p.L655L 0.37 TCGA-43-3920-01 19 16025601 16025601 A T CYP4F11 Missense_Mutation p.V407E 0.75 tolerated(0.49) benign(0.022) TCGA-43-3920-01 19 2129329 2129329 C G AP3D1 Missense_Mutation p.K240N 0.56 deleterious(0.01) probably_damaging(1) TCGA-43-3920-01 19 24309470 24309470 C T ZNF254 Missense_Mutation p.S223L 0.57 tolerated(0.07) benign(0.295) TCGA-43-3920-01 19 36120495 36120495 A G RBM42 Missense_Mutation p.T68A 0.20 tolerated(0.49) possibly_damaging(0.507) TCGA-43-3920-01 19 36333142 36333142 C G NPHS1 Silent p.V849V 0.20 TCGA-43-3920-01 19 36611661 36611661 G C TBCB Missense_Mutation p.R103P 0.55 deleterious(0.03) benign(0.001) TCGA-43-3920-01 19 37961251 37961251 G C ZNF570 5'UTR 0.10 TCGA-43-3920-01 19 38882630 38882630 G A SPRED3 Silent p.K74K 0.13 TCGA-43-3920-01 19 42863021 42863021 G T MEGF8 Missense_Mutation p.R1686L 0.47 tolerated_low_confidence(0.81) benign(0) TCGA-43-3920-01 19 43910665 43910665 G A TEX101 Silent p.A3A 0.37 TCGA-43-3920-01 19 47549873 47549873 G T TMEM160 Missense_Mutation p.D93E 0.12 tolerated(0.14) benign(0.259) TCGA-43-3920-01 19 49377887 49377887 C G PPP1R15A Nonsense_Mutation p.S466* 0.13 TCGA-43-3920-01 19 49654775 49654775 G C HRC Missense_Mutation p.Q688E 0.18 deleterious(0) possibly_damaging(0.519) TCGA-43-3920-01 19 51132558 51132558 C T SYT3 Missense_Mutation p.G425D 0.70 deleterious(0.01) probably_damaging(0.913) TCGA-43-3920-01 19 54327540 54327540 G T NLRP12 5'UTR 0.56 TCGA-43-3920-01 19 55602858 55602858 G A PPP1R12C Silent p.I777I 0.24 TCGA-43-3920-01 19 57286681 57286681 G A ZIM2 Missense_Mutation p.S320L 0.16 tolerated(0.37) benign(0.003) TCGA-43-3920-01 19 6730269 6730269 A T GPR108 3'UTR 0.15 TCGA-43-3920-01 1 10228233 10228233 G A UBE4B Missense_Mutation p.E1080K 0.19 deleterious(0) probably_damaging(0.963) TCGA-43-3920-01 1 11015097 11015097 T C C1orf127 Missense_Mutation p.K309E 0.43 deleterious(0.02) possibly_damaging(0.533) TCGA-43-3920-01 1 115137122 115137122 G C DENND2C Missense_Mutation p.I801M 0.34 deleterious(0.04) possibly_damaging(0.863) TCGA-43-3920-01 1 118003163 118003163 G A MAN1A2 Missense_Mutation p.E335K 0.34 deleterious(0) probably_damaging(0.995) TCGA-43-3920-01 1 149906927 149906927 C A MTMR11 Silent p.L140L 0.52 TCGA-43-3920-01 1 150192944 150192944 C T ANP32E 3'UTR 0.25 TCGA-43-3920-01 1 152732698 152732698 C T KPRP Missense_Mutation p.P212S 0.10 tolerated(0.25) benign(0.039) TCGA-43-3920-01 1 154832198 154832198 G C KCNN3 Intron 0.33 TCGA-43-3920-01 1 155006051 155006051 G A DCST2 Silent p.L43L 0.13 TCGA-43-3920-01 1 15792535 15792535 C G CELA2A Missense_Mutation p.L179V 0.60 tolerated(0.32) benign(0.051) TCGA-43-3920-01 1 158614993 158614993 C A SPTA1 Missense_Mutation p.Q1393H 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-43-3920-01 1 160801188 160801188 G C CD244 Missense_Mutation p.N354K 0.37 deleterious(0) possibly_damaging(0.863) TCGA-43-3920-01 1 161132464 161132464 A T USP21 Missense_Mutation p.T281S 0.26 tolerated(1) benign(0.022) TCGA-43-3920-01 1 171227315 171227315 G A FMO1 Missense_Mutation p.C30Y 0.31 deleterious(0.01) probably_damaging(1) TCGA-43-3920-01 1 176153775 176153775 C T RFWD2 Missense_Mutation p.S154N 0.07 tolerated(0.05) possibly_damaging(0.796) TCGA-43-3920-01 1 176918373 176918373 T A ASTN1 Missense_Mutation p.M668L 0.13 tolerated(1) benign(0.001) TCGA-43-3920-01 1 176934344 176934344 C A ASTN1 Missense_Mutation p.G518V 0.51 deleterious_low_confidence(0) probably_damaging(1) TCGA-43-3920-01 1 181765947 181765947 C A CACNA1E Missense_Mutation p.Q2118K 0.29 tolerated(0.44) benign(0.007) TCGA-43-3920-01 1 183617486 183617486 G A APOBEC4 Missense_Mutation p.T144M 0.12 tolerated(0.27) benign(0.006) TCGA-43-3920-01 1 202568477 202568477 G C SYT2 Missense_Mutation p.P308A 0.29 deleterious(0) benign(0.003) TCGA-43-3920-01 1 206230826 206230826 T A AVPR1B Missense_Mutation p.F320Y 0.27 deleterious(0.05) benign(0.209) TCGA-43-3920-01 1 206944738 206944738 T C IL10 Missense_Mutation p.N63S 0.20 tolerated(0.73) benign(0.001) TCGA-43-3920-01 1 208270171 208270171 C A PLXNA2 Missense_Mutation p.G597W 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-43-3920-01 1 21571587 21571587 G A ECE1 Silent p.N391N 0.20 TCGA-43-3920-01 1 221879746 221879746 C G DUSP10 Missense_Mutation p.E292Q 0.41 tolerated(0.32) benign(0.002) TCGA-43-3920-01 1 22336303 22336303 C T CELA3A Missense_Mutation p.P250S 0.27 deleterious(0) probably_damaging(1) TCGA-43-3920-01 1 223568431 223568431 G A C1orf65 Silent p.L538L 0.32 TCGA-43-3920-01 1 223949944 223949944 G C CAPN2 Missense_Mutation p.L541F 0.30 tolerated(0.09) possibly_damaging(0.858) TCGA-43-3920-01 1 235747056 235747056 C A GNG4 Missense_Mutation p.C28F 0.15 deleterious(0.02) benign(0.007) TCGA-43-3920-01 1 237732496 237732496 G T RYR2 Missense_Mutation p.G1159C 0.30 probably_damaging(1) TCGA-43-3920-01 1 240976974 240976974 A G RGS7 Silent p.P300P 0.22 TCGA-43-3920-01 1 242035547 242035547 G C EXO1 Missense_Mutation p.S494T 0.10 tolerated(0.18) benign(0.003) TCGA-43-3920-01 1 246704449 246704449 C T TFB2M Missense_Mutation p.D359N 0.33 tolerated(1) benign(0.015) TCGA-43-3920-01 1 248004383 248004383 C G OR11L1 Missense_Mutation p.K272N 0.39 deleterious(0) probably_damaging(1) TCGA-43-3920-01 1 248525278 248525278 G T OR2T4 Missense_Mutation p.Q132H 0.42 deleterious(0) probably_damaging(0.993) TCGA-43-3920-01 1 248616510 248616510 A G OR2T2 Missense_Mutation p.N138D 0.15 tolerated(0.07) benign(0.106) TCGA-43-3920-01 1 248637397 248637397 A T OR2T3 Missense_Mutation p.H249L 0.22 deleterious(0) probably_damaging(0.999) TCGA-43-3920-01 1 29189343 29189343 G A OPRD1 Missense_Mutation p.V223M 0.62 tolerated(0.1) possibly_damaging(0.458) TCGA-43-3920-01 1 3389705 3389705 C T ARHGEF16 Silent p.I362I 0.33 TCGA-43-3920-01 1 36509055 36509055 G T AGO3 Missense_Mutation p.R727I 0.11 deleterious(0) possibly_damaging(0.486) TCGA-43-3920-01 1 36509093 36509093 G T AGO3 Missense_Mutation p.D740Y 0.18 deleterious(0.02) possibly_damaging(0.612) TCGA-43-3920-01 1 36509117 36509117 G A AGO3 Missense_Mutation p.D748N 0.13 deleterious(0) probably_damaging(0.942) TCGA-43-3920-01 1 38171130 38171130 G A CDCA8 Missense_Mutation p.G201D 0.31 deleterious(0.02) probably_damaging(1) TCGA-43-3920-01 1 46488582 46488582 A G MAST2 Missense_Mutation p.E475G 0.09 deleterious_low_confidence(0.01) benign(0.393) TCGA-43-3920-01 1 64097450 64097450 G T PGM1 Nonsense_Mutation p.G245* 0.28 TCGA-43-3920-01 1 64644214 64644214 G A ROR1 Silent p.A830A 0.32 TCGA-43-3920-01 1 74929215 74929215 G A TNNI3K Missense_Mutation p.G802E 0.27 tolerated(0.06) probably_damaging(0.999) TCGA-43-3920-01 1 75065437 75065437 G T C1orf173 Missense_Mutation p.D556E 0.31 tolerated(0.06) benign(0.382) TCGA-43-3920-01 1 75171962 75171962 C A CRYZ 3'UTR 0.21 TCGA-43-3920-01 1 75171963 75171963 C A CRYZ 3'UTR 0.21 TCGA-43-3920-01 1 77510258 77510258 C A ST6GALNAC5 Missense_Mutation p.Q211K 0.37 benign(0.02) TCGA-43-3920-01 1 89652027 89652027 G C GBP4 Missense_Mutation p.H566D 0.09 tolerated(0.08) possibly_damaging(0.862) TCGA-43-3920-01 1 98165061 98165061 G A DPYD Silent p.L176L 0.22 TCGA-43-3920-01 20 30745599 30745599 G A TM9SF4 Silent p.V444V 0.48 TCGA-43-3920-01 20 34828318 34828318 G C AAR2 Missense_Mutation p.Q176H 0.50 tolerated(0.11) benign(0.142) TCGA-43-3920-01 20 44815288 44815288 G C CDH22 Missense_Mutation p.F534L 0.12 deleterious(0.04) benign(0.007) TCGA-43-3920-01 20 52645430 52645430 G T BCAS1 Missense_Mutation p.A75D 0.58 deleterious(0) probably_damaging(0.978) TCGA-43-3920-01 20 7915149 7915149 C T HAO1 Missense_Mutation p.E91K 0.17 deleterious(0) probably_damaging(1) TCGA-43-3920-01 21 11012929 11012929 C A TPTE RNA 0.12 TCGA-43-3920-01 21 22910240 22910240 G T NCAM2 Missense_Mutation p.D826Y 0.57 deleterious(0) probably_damaging(1) TCGA-43-3920-01 21 47985788 47985788 G A DIP2A Missense_Mutation p.D1443N 0.55 tolerated(0.09) probably_damaging(0.989) TCGA-43-3920-01 22 17978484 17978484 G T CECR2 Missense_Mutation p.D109Y 0.10 deleterious(0) probably_damaging(0.974) TCGA-43-3920-01 22 19865933 19865933 C A TXNRD2 Nonsense_Mutation p.E435* 0.12 TCGA-43-3920-01 22 21119167 21119167 G C PI4KA Missense_Mutation p.I882M 0.11 deleterious(0) possibly_damaging(0.786) TCGA-43-3920-01 22 21322218 21322218 C A AIFM3 5'UTR 0.54 TCGA-43-3920-01 22 29533453 29533453 C T KREMEN1 Missense_Mutation p.S252F 0.14 tolerated(0.17) benign(0.059) TCGA-43-3920-01 22 31363827 31363827 C G MORC2 5'UTR 0.15 TCGA-43-3920-01 22 39908032 39908032 G A MIEF1 Splice_Site p.X108_splice 0.17 TCGA-43-3920-01 22 42099442 42099442 C T MEI1 Silent p.F94F 0.33 TCGA-43-3920-01 22 51237431 51237431 A G RPL23AP82 RNA 0.62 TCGA-43-3920-01 2 102475492 102475492 G C MAP4K4 Missense_Mutation p.R477P 0.21 deleterious_low_confidence(0) unknown(0) TCGA-43-3920-01 2 106761715 106761715 C G UXS1 Missense_Mutation p.E135Q 0.38 tolerated(0.19) benign(0.219) TCGA-43-3920-01 2 133539570 133539570 C A NCKAP5 Missense_Mutation p.R1605I 0.14 tolerated(0.18) possibly_damaging(0.887) TCGA-43-3920-01 2 135185973 135185973 G C MGAT5 Missense_Mutation p.G611A 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-43-3920-01 2 136555694 136555694 C A LCT Missense_Mutation p.W1627C 0.28 deleterious(0) probably_damaging(1) TCGA-43-3920-01 2 137814061 137814061 G C THSD7B Missense_Mutation p.V71L 0.34 tolerated(0.23) benign(0.198) TCGA-43-3920-01 2 137852667 137852667 G T THSD7B Missense_Mutation p.G392V 0.26 deleterious(0.03) probably_damaging(0.996) TCGA-43-3920-01 2 137917791 137917791 C A THSD7B Missense_Mutation p.P460T 0.23 deleterious(0.02) possibly_damaging(0.803) TCGA-43-3920-01 2 165952979 165952979 C G SCN3A Missense_Mutation p.D1431H 0.27 deleterious(0.04) possibly_damaging(0.847) TCGA-43-3920-01 2 171902795 171902795 G C TLK1 Missense_Mutation p.T353R 0.34 tolerated(0.11) benign(0.093) TCGA-43-3920-01 2 179436183 179436183 A T TTN Missense_Mutation p.S24892R 0.41 TCGA-43-3920-01 2 179516472 179516472 G T TTN Silent p.T13128T 0.31 TCGA-43-3920-01 2 179597774 179597774 C A TTN Missense_Mutation p.D5377Y 0.45 TCGA-43-3920-01 2 179616631 179616631 G T TTN Intron 0.22 TCGA-43-3920-01 2 202025610 202025610 C A CFLAR Missense_Mutation p.H417N 0.22 deleterious(0.04) benign(0.004) TCGA-43-3920-01 2 209136333 209136333 T C PIKFYVE Silent p.F30F 0.37 TCGA-43-3920-01 2 21232830 21232830 T C APOB Missense_Mutation p.T2304A 0.11 benign(0.001) TCGA-43-3920-01 2 219252307 219252308 TT - SLC11A1 Frame_Shift_Del p.F199Wfs*14 0.16 TCGA-43-3920-01 2 220404600 220404600 G A CHPF Silent p.F611F 0.45 TCGA-43-3920-01 2 240960628 240960628 T G NDUFA10 Missense_Mutation p.H149P 0.11 deleterious(0) probably_damaging(0.997) TCGA-43-3920-01 2 25062839 25062839 C T ADCY3 Missense_Mutation p.V420M 0.30 deleterious(0) probably_damaging(1) TCGA-43-3920-01 2 26502980 26502980 C G HADHB Missense_Mutation p.F310L 0.62 tolerated(0.13) benign(0.395) TCGA-43-3920-01 2 26697491 26697491 C - OTOF Frame_Shift_Del p.A1060Qfs*86 0.43 TCGA-43-3920-01 2 28816919 28816919 G A PLB1 Intron 0.61 TCGA-43-3920-01 2 31754473 31754473 C T AL133247.2 Intron 0.63 TCGA-43-3920-01 2 43547631 43547631 G C THADA Missense_Mutation p.F1464L 0.57 tolerated(0.6) benign(0.001) TCGA-43-3920-01 2 64780367 64780367 G C AFTPH Missense_Mutation p.A587P 0.55 deleterious(0.04) probably_damaging(0.96) TCGA-43-3920-01 2 79878772 79878772 A C CTNNA2 Silent p.P30P 0.58 TCGA-43-3920-01 2 98351014 98351014 G - ZAP70 Frame_Shift_Del p.M308Cfs*25 0.21 TCGA-43-3920-01 3 108363257 108363257 A T DZIP3 Missense_Mutation p.K463I 0.49 deleterious_low_confidence(0) possibly_damaging(0.888) TCGA-43-3920-01 3 124431836 124431836 G T KALRN Silent p.V1013V 0.42 TCGA-43-3920-01 3 124724179 124724179 C G HEG1 Missense_Mutation p.R1076T 0.34 deleterious(0.02) benign(0.093) TCGA-43-3920-01 3 126270960 126270960 G A C3orf22 Missense_Mutation p.S32L 0.14 deleterious(0) possibly_damaging(0.776) TCGA-43-3920-01 3 129389574 129389574 T A TMCC1 Missense_Mutation p.R370S 0.54 deleterious(0) possibly_damaging(0.843) TCGA-43-3920-01 3 130287403 130287403 C A COL6A6 Missense_Mutation p.R786S 0.43 tolerated(0.71) benign(0.134) TCGA-43-3920-01 3 130452690 130452690 G C PIK3R4 Silent p.S384S 0.20 TCGA-43-3920-01 3 130715610 130715610 A G ATP2C1 Missense_Mutation p.N772S 0.28 deleterious(0) probably_damaging(0.998) TCGA-43-3920-01 3 133327499 133327499 T A TOPBP1 Silent p.T1435T 0.14 TCGA-43-3920-01 3 134339655 134339655 G C KY Silent p.L176L 0.32 TCGA-43-3920-01 3 136068095 136068095 T G STAG1 Missense_Mutation p.D1059A 0.42 deleterious(0.02) probably_damaging(0.983) TCGA-43-3920-01 3 136573495 136573495 G A SLC35G2 Missense_Mutation p.G65R 0.21 tolerated(0.08) possibly_damaging(0.494) TCGA-43-3920-01 3 138762920 138762920 G A PRR23C Silent p.S181S 0.42 TCGA-43-3920-01 3 147130317 147130317 T G ZIC1 Missense_Mutation p.F332C 0.12 deleterious(0) probably_damaging(0.998) TCGA-43-3920-01 3 150264440 150264440 C G SERP1 5'UTR 0.40 TCGA-43-3920-01 3 153909148 153909148 A G ARHGEF26 Missense_Mutation p.M571V 0.31 deleterious(0) possibly_damaging(0.688) TCGA-43-3920-01 3 154859822 154859822 G T MME Missense_Mutation p.V334L 0.48 deleterious(0) probably_damaging(0.957) TCGA-43-3920-01 3 158541245 158541245 T C MFSD1 Missense_Mutation p.L418P 0.22 deleterious(0) probably_damaging(0.982) TCGA-43-3920-01 3 164750383 164750383 G T SI Missense_Mutation p.T888K 0.40 tolerated(0.12) benign(0.006) TCGA-43-3920-01 3 179501871 179501871 C G USP13 Nonsense_Mutation p.S845* 0.24 TCGA-43-3920-01 3 197427648 197427648 G A KIAA0226 Missense_Mutation p.A366V 0.27 tolerated(0.22) benign(0.004) TCGA-43-3920-01 3 38798202 38798202 A T SCN10A Missense_Mutation p.F418Y 0.54 tolerated(0.17) benign(0.102) TCGA-43-3920-01 3 46063247 46063247 G A XCR1 Missense_Mutation p.L65F 0.48 deleterious(0) probably_damaging(0.923) TCGA-43-3920-01 3 89528545 89528545 A T EPHA3 Splice_Site p.X949_splice 0.61 TCGA-43-3920-01 4 15964609 15964609 G C FGFBP2 Missense_Mutation p.S48R 0.26 deleterious(0.01) possibly_damaging(0.45) TCGA-43-3920-01 4 175414319 175414319 T C HPGD Silent p.K215K 0.35 TCGA-43-3920-01 4 177241318 177241318 G C SPCS3 Missense_Mutation p.A31P 0.35 tolerated(0.06) possibly_damaging(0.88) TCGA-43-3920-01 4 183675635 183675635 G T TENM3 Missense_Mutation p.R1372L 0.59 tolerated(0.62) benign(0.006) TCGA-43-3920-01 4 20533630 20533630 C T SLIT2 Missense_Mutation p.T546I 0.30 deleterious(0.01) benign(0.109) TCGA-43-3920-01 4 25821452 25821452 G A SEL1L3 Silent p.H467H 0.25 TCGA-43-3920-01 4 39827057 39827057 G C PDS5A 3'UTR 0.27 TCGA-43-3920-01 4 54327114 54327114 A G LNX1 Missense_Mutation p.I716T 0.33 deleterious(0) possibly_damaging(0.864) TCGA-43-3920-01 4 57261688 57261688 C T PPAT Missense_Mutation p.V462I 0.30 tolerated(0.29) benign(0.059) TCGA-43-3920-01 4 80328018 80328018 A G GK2 Missense_Mutation p.V446A 0.08 deleterious(0) probably_damaging(0.972) TCGA-43-3920-01 4 96163623 96163623 G T UNC5C Silent p.L355L 0.54 TCGA-43-3920-01 5 13716740 13716740 G A DNAH5 Silent p.V4255V 0.29 TCGA-43-3920-01 5 139193044 139193044 C T PSD2 Silent p.V174V 0.68 TCGA-43-3920-01 5 140176083 140176083 G A PCDHA2 Missense_Mutation p.A512T 0.37 deleterious_low_confidence(0.01) benign(0.396) TCGA-43-3920-01 5 140783283 140783285 TGC GG PCDHGA9 Frame_Shift_Del p.V255Gfs*53 0.09 TCGA-43-3920-01 5 156482466 156482466 A G HAVCR1 Missense_Mutation p.V42A 0.58 deleterious(0) benign(0.294) TCGA-43-3920-01 5 16475279 16475279 A G FAM134B Silent p.N355N 0.48 TCGA-43-3920-01 5 23510030 23510030 T C PRDM9 Silent p.G65G 0.39 TCGA-43-3920-01 5 23526702 23526702 A T PRDM9 Missense_Mutation p.Q502L 0.34 deleterious(0.02) benign(0.441) TCGA-43-3920-01 6 105281021 105281021 T C HACE1 Missense_Mutation p.T144A 0.15 tolerated(0.09) possibly_damaging(0.846) TCGA-43-3920-01 6 109175566 109175566 A G ARMC2 Silent p.E32E 0.41 TCGA-43-3920-01 6 109769511 109769511 G T MICAL1 Missense_Mutation p.P584T 0.14 deleterious(0) probably_damaging(0.997) TCGA-43-3920-01 6 110736689 110736689 C A DDO Missense_Mutation p.D21Y 0.31 tolerated_low_confidence(0.09) benign(0.011) TCGA-43-3920-01 6 123318999 123318999 C A CLVS2 Missense_Mutation p.T26K 0.39 tolerated(0.92) possibly_damaging(0.564) TCGA-43-3920-01 6 128134270 128134270 C A THEMIS Missense_Mutation p.V506L 0.34 tolerated(0.14) benign(0.014) TCGA-43-3920-01 6 146673571 146673571 T A GRM1 Missense_Mutation p.S458T 0.09 tolerated(0.47) benign(0.075) TCGA-43-3920-01 6 151859208 151859208 C T CCDC170 Missense_Mutation p.S72F 0.38 deleterious(0) probably_damaging(0.974) TCGA-43-3920-01 6 152949431 152949431 C A SYNE1 Silent p.R12R 0.24 TCGA-43-3920-01 6 157521975 157521975 G T ARID1B Missense_Mutation p.R1416L 0.24 probably_damaging(0.993) TCGA-43-3920-01 6 161006101 161006101 C G LPA Missense_Mutation p.R1422S 0.29 tolerated(0.45) probably_damaging(0.997) TCGA-43-3920-01 6 170169666 170169666 G C ERMARD Missense_Mutation p.E364Q 0.25 deleterious(0) possibly_damaging(0.791) TCGA-43-3920-01 6 25727146 25727146 G A HIST1H2BA Missense_Mutation p.V4M 0.42 tolerated_low_confidence(0.09) benign(0.033) TCGA-43-3920-01 6 25770337 25770337 C G SLC17A4 Missense_Mutation p.L114V 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-43-3920-01 6 35280413 35280413 G T DEF6 Missense_Mutation p.W224L 0.42 tolerated(0.23) benign(0.268) TCGA-43-3920-01 6 51907930 51907930 C G PKHD1 Missense_Mutation p.G942R 0.38 tolerated(0.06) possibly_damaging(0.601) TCGA-43-3920-01 6 52656747 52656747 G T GSTA1 Missense_Mutation p.T193K 0.08 deleterious(0.01) benign(0.071) TCGA-43-3920-01 6 72967848 72967848 A G RIMS1 Missense_Mutation p.R931G 0.33 deleterious(0) probably_damaging(0.992) TCGA-43-3920-01 6 84865148 84865148 C A KIAA1009 Missense_Mutation p.D955Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-43-3920-01 7 141315303 141315303 C T AGK Silent p.I152I 0.51 TCGA-43-3920-01 7 143421745 143421745 C T FAM115C Silent p.P820P 0.27 TCGA-43-3920-01 7 149545452 149545452 C T ZNF862 Silent p.I290I 0.54 TCGA-43-3920-01 7 20762813 20762813 G A ABCB5 Missense_Mutation p.D866N 0.31 tolerated(0.11) possibly_damaging(0.519) TCGA-43-3920-01 7 21727028 21727028 T A DNAH11 Missense_Mutation p.V1943E 0.44 benign(0.444) TCGA-43-3920-01 7 28848907 28848907 G A CREB5 Missense_Mutation p.R377K 0.44 tolerated(0.18) unknown(0) TCGA-43-3920-01 7 30544197 30544198 CA - GGCT Frame_Shift_Del p.V43Gfs*7 0.37 TCGA-43-3920-01 7 31592800 31592800 G T CCDC129 Silent p.L80L 0.35 TCGA-43-3920-01 7 4089005 4089005 G T SDK1 Silent p.V876V 0.18 TCGA-43-3920-01 7 50057886 50057886 G T ZPBP Missense_Mutation p.P245T 0.25 tolerated(0.56) benign(0.046) TCGA-43-3920-01 7 7410440 7410440 T C COL28A1 Silent p.S994S 0.36 TCGA-43-3920-01 7 8099836 8099836 G A GLCCI1 Silent p.K308K 0.29 TCGA-43-3920-01 7 92987839 92987839 C T CCDC132 3'UTR 0.12 TCGA-43-3920-01 7 99917383 99917383 C T SPDYE3 Silent p.F514F 0.65 TCGA-43-3920-01 7 99971747 99971747 G T PILRA Missense_Mutation p.V49L 0.12 tolerated(0.06) benign(0.113) TCGA-43-3920-01 8 113237043 113237043 A G CSMD3 Missense_Mutation p.V3694A 0.31 tolerated(0.53) possibly_damaging(0.605) TCGA-43-3920-01 8 113418774 113418774 C A CSMD3 Missense_Mutation p.D1930Y 0.38 tolerated(0.07) probably_damaging(0.989) TCGA-43-3920-01 8 11640745 11640745 G T NEIL2 Silent p.L175L 0.56 TCGA-43-3920-01 8 133100143 133100143 G C HHLA1 Missense_Mutation p.Q216E 0.44 deleterious(0) possibly_damaging(0.878) TCGA-43-3920-01 8 134262695 134262695 T C NDRG1 Missense_Mutation p.N229S 0.27 tolerated(0.18) benign(0.002) TCGA-43-3920-01 8 139164198 139164198 C A FAM135B Missense_Mutation p.Q840H 0.33 tolerated_low_confidence(0.13) benign(0.011) TCGA-43-3920-01 8 144406775 144406775 C A TOP1MT Silent p.P232P 0.53 TCGA-43-3920-01 8 144990859 144990859 C G PLEC Missense_Mutation p.G4514A 0.27 probably_damaging(0.999) TCGA-43-3920-01 8 28309902 28309902 C A FBXO16 Missense_Mutation p.R200L 0.43 tolerated(0.21) benign(0.015) TCGA-43-3920-01 8 77618799 77618799 G T ZFHX4 Missense_Mutation p.A826S 0.30 possibly_damaging(0.567) TCGA-43-3920-01 8 77763701 77763701 C A ZFHX4 Missense_Mutation p.S1515Y 0.30 benign(0.027) TCGA-43-3920-01 8 91072367 91072367 G T CALB1 3'UTR 0.43 TCGA-43-3920-01 9 104449076 104449076 C A GRIN3A Missense_Mutation p.G369V 0.67 deleterious(0) probably_damaging(0.949) TCGA-43-3920-01 9 107602611 107602611 C A ABCA1 Nonsense_Mutation p.G335* 0.55 TCGA-43-3920-01 9 21305250 21305250 G T IFNA5 Silent p.A2A 0.67 TCGA-43-3920-01 9 33385652 33385652 G A AQP7 Silent p.V246V 0.13 TCGA-43-3920-01 9 34647203 34647203 G A GALT Missense_Mutation p.R67H 0.60 tolerated(0.1) probably_damaging(0.981) TCGA-43-3920-01 9 74842874 74842874 G A GDA Missense_Mutation p.G280S 0.60 tolerated(0.47) probably_damaging(0.967) TCGA-43-3920-01 9 77407667 77407667 C G TRPM6 Missense_Mutation p.R804T 0.65 tolerated(0.06) benign(0.423) TCGA-43-3920-01 9 86570396 86570396 G C C9orf64 Missense_Mutation p.S166C 0.51 deleterious(0) benign(0.376) TCGA-43-3920-01 9 95993306 95993306 A T WNK2 Missense_Mutation p.I331F 0.42 unknown(0) TCGA-43-3920-01 X 100603684 100603684 C A TIMM8A 5'UTR 0.83 TCGA-43-3920-01 X 123020331 123020331 G A XIAP Silent p.G273G 0.70 TCGA-43-3920-01 X 27766261 27766261 G T DCAF8L2 Missense_Mutation p.V417F 0.72 deleterious(0.01) possibly_damaging(0.875) TCGA-43-3920-01 X 51079093 51079093 G T NUDT10 Intron 0.62 TCGA-43-3920-01 X 70678145 70678145 G T TAF1 Missense_Mutation p.V1685L 0.68 tolerated_low_confidence(0.54) benign(0.002) TCGA-43-3920-01 X 99663159 99663159 G A PCDH19 Missense_Mutation p.T146M 0.68 deleterious(0) probably_damaging(1) TCGA-43-3920-01 Y 4925417 4925417 G C PCDH11Y Missense_Mutation p.A185P 0.48 tolerated(0.32) probably_damaging(0.991) TCGA-43-5668-01 10 105657461 105657461 C A OBFC1 Missense_Mutation p.D200Y 0.10 deleterious(0.01) probably_damaging(0.974) TCGA-43-5668-01 10 115365538 115365538 C A NRAP Nonsense_Mutation p.G1300* 0.20 TCGA-43-5668-01 10 116195975 116195975 C A ABLIM1 3'UTR 0.15 TCGA-43-5668-01 10 118321144 118321144 A G PNLIP Missense_Mutation p.K444E 0.27 tolerated(0.28) benign(0.001) TCGA-43-5668-01 10 124339201 124339201 T C DMBT1 Missense_Mutation p.W263R 0.21 deleterious(0) probably_damaging(1) TCGA-43-5668-01 10 124339203 124339203 G A DMBT1 Nonsense_Mutation p.W263* 0.21 TCGA-43-5668-01 10 124353098 124353098 G A DMBT1 Silent p.R838R 0.19 TCGA-43-5668-01 10 21903765 21903765 A T MLLT10 Missense_Mutation p.Q172L 0.28 deleterious(0) probably_damaging(0.998) TCGA-43-5668-01 10 26463077 26463077 A G MYO3A Missense_Mutation p.Y1295C 0.25 tolerated_low_confidence(0.15) benign(0.001) TCGA-43-5668-01 10 28224093 28224093 C T ARMC4 Missense_Mutation p.G781R 0.31 deleterious(0) probably_damaging(0.998) TCGA-43-5668-01 10 31138162 31138162 T C ZNF438 Missense_Mutation p.D391G 0.23 deleterious(0) possibly_damaging(0.903) TCGA-43-5668-01 10 38305892 38305892 G A ZNF33A Missense_Mutation p.A35T 0.29 tolerated(1) benign(0.011) TCGA-43-5668-01 10 43595929 43595930 - A RET Frame_Shift_Ins p.R33Kfs*29 0.20 TCGA-43-5668-01 10 49450230 49450231 - A FRMPD2 Frame_Shift_Ins p.G181Wfs*9 0.28 TCGA-43-5668-01 10 54529061 54529061 G T MBL2 Missense_Mutation p.L107M 0.14 tolerated(0.06) benign(0.212) TCGA-43-5668-01 10 55582009 55582009 G A PCDH15 Missense_Mutation p.P1828L 0.16 tolerated_low_confidence(0.14) unknown(0) TCGA-43-5668-01 10 55755403 55755403 A G PCDH15 Intron 0.28 TCGA-43-5668-01 10 55892716 55892716 G T PCDH15 Missense_Mutation p.S612R 0.19 tolerated(0.19) possibly_damaging(0.686) TCGA-43-5668-01 10 61029743 61029743 C T FAM13C Missense_Mutation p.R240Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-43-5668-01 10 75239135 75239135 C G PPP3CB Missense_Mutation p.E76Q 0.23 tolerated(0.28) benign(0.023) TCGA-43-5668-01 10 79613209 79613209 C A DLG5 Missense_Mutation p.R256L 0.33 deleterious(0.02) probably_damaging(0.994) TCGA-43-5668-01 10 82271915 82271915 G T TSPAN14 Missense_Mutation p.A156S 0.08 deleterious(0.02) benign(0.329) TCGA-43-5668-01 11 102592148 102592148 C G MMP8 Missense_Mutation p.W202C 0.19 deleterious(0) probably_damaging(0.999) TCGA-43-5668-01 11 108057295 108057295 C A NPAT Nonsense_Mutation p.E214* 0.35 TCGA-43-5668-01 11 11348656 11348656 T C GALNT18 Missense_Mutation p.I497V 0.11 tolerated(0.48) benign(0.062) TCGA-43-5668-01 11 119031262 119031262 G A ABCG4 Silent p.V537V 0.35 TCGA-43-5668-01 11 11985924 11985924 A G DKK3 3'UTR 0.13 TCGA-43-5668-01 11 120008122 120008122 G T TRIM29 Silent p.A206A 0.10 TCGA-43-5668-01 11 124412845 124412845 C T OR8B12 Missense_Mutation p.A236T 0.13 deleterious_low_confidence(0.01) probably_damaging(0.973) TCGA-43-5668-01 11 124829068 124829068 G A CCDC15 Missense_Mutation p.A79T 0.40 deleterious(0.05) probably_damaging(0.981) TCGA-43-5668-01 11 134062759 134062759 C - NCAPD3 Frame_Shift_Del p.V624Wfs*5 0.33 TCGA-43-5668-01 11 14480146 14480146 C A COPB1 Nonsense_Mutation p.E912* 0.13 TCGA-43-5668-01 11 16036565 16036565 T A SOX6 Missense_Mutation p.Q552L 0.06 deleterious(0.04) benign(0.339) TCGA-43-5668-01 11 1861789 1861789 T A TNNI2 Missense_Mutation p.L30Q 0.32 deleterious(0) possibly_damaging(0.661) TCGA-43-5668-01 11 18731979 18731979 G A IGSF22 Missense_Mutation p.L866F 0.14 tolerated(0.06) probably_damaging(0.987) TCGA-43-5668-01 11 19077733 19077734 CG T MRGPRX2 Frame_Shift_Del p.A74Pfs*11 0.15 TCGA-43-5668-01 11 20660004 20660004 G C SLC6A5 Splice_Site p.X624_splice 0.13 TCGA-43-5668-01 11 2981043 2981043 C A NAP1L4 Missense_Mutation p.D235Y 0.12 deleterious(0.01) probably_damaging(0.989) TCGA-43-5668-01 11 30034104 30034104 G T KCNA4 Missense_Mutation p.A41E 0.17 deleterious_low_confidence(0.01) unknown(0) TCGA-43-5668-01 11 44146495 44146495 C T EXT2 Silent p.C333C 0.18 TCGA-43-5668-01 11 4470671 4470671 C T OR52K2 Silent p.C34C 0.29 TCGA-43-5668-01 11 45671602 45671602 G T CHST1 Missense_Mutation p.P291Q 0.34 tolerated(0.34) benign(0.22) TCGA-43-5668-01 11 46404190 46404190 A C MDK Missense_Mutation p.T100P 0.11 tolerated(0.09) probably_damaging(0.958) TCGA-43-5668-01 11 46908042 46908042 C A LRP4 Missense_Mutation p.R753L 0.27 deleterious(0) benign(0.185) TCGA-43-5668-01 11 47355296 47355296 G A MYBPC3 Missense_Mutation p.P1001L 0.43 deleterious(0) probably_damaging(0.999) TCGA-43-5668-01 11 4945209 4945209 A T OR51G1 Missense_Mutation p.S121T 0.11 deleterious(0.01) possibly_damaging(0.65) TCGA-43-5668-01 11 5373146 5373146 A T OR51B6 Missense_Mutation p.T137S 0.09 tolerated(1) benign(0.001) TCGA-43-5668-01 11 55405832 55405832 C T OR4P4 5'Flank 0.07 TCGA-43-5668-01 11 55606660 55606660 A C OR5D16 Missense_Mutation p.M145L 0.10 tolerated(1) benign(0.004) TCGA-43-5668-01 11 56127828 56127828 G A OR8J1 Missense_Mutation p.G36R 0.11 tolerated(0.27) possibly_damaging(0.474) TCGA-43-5668-01 11 5626790 5626790 T A TRIM6 Missense_Mutation p.L276Q 0.14 deleterious(0.01) probably_damaging(0.954) TCGA-43-5668-01 11 57114588 57114588 A G P2RX3 Splice_Site p.X86_splice 0.07 TCGA-43-5668-01 11 5799597 5799597 C A OR52N5 Missense_Mutation p.A90S 0.19 deleterious(0) benign(0.146) TCGA-43-5668-01 11 5862836 5862836 C A OR52E6 Missense_Mutation p.G98C 0.26 tolerated(0.17) benign(0.025) TCGA-43-5668-01 11 5878459 5878459 G T OR52E8 Missense_Mutation p.S158R 0.33 deleterious(0.04) benign(0.045) TCGA-43-5668-01 11 60183135 60183135 G T MS4A14 Nonsense_Mutation p.E265* 0.40 TCGA-43-5668-01 11 60482507 60482507 C T MS4A8 Missense_Mutation p.A183V 0.12 tolerated(0.09) benign(0.343) TCGA-43-5668-01 11 62766531 62766531 G T SLC22A8 Missense_Mutation p.A208D 0.36 deleterious(0) probably_damaging(0.979) TCGA-43-5668-01 11 62910984 62910984 G T SLC22A24 Missense_Mutation p.R90S 0.38 deleterious(0) possibly_damaging(0.605) TCGA-43-5668-01 11 65767038 65767038 C A EIF1AD Missense_Mutation p.W102L 0.10 deleterious(0) probably_damaging(0.991) TCGA-43-5668-01 11 67171784 67171784 C A TBC1D10C Silent p.A37A 0.18 TCGA-43-5668-01 11 6816427 6816427 G T OR6A2 Silent p.L171L 0.12 TCGA-43-5668-01 11 68838835 68838835 C T TPCN2 Silent p.L303L 0.17 TCGA-43-5668-01 11 6913409 6913409 C A OR2D2 Missense_Mutation p.G108V 0.30 deleterious(0.05) possibly_damaging(0.864) TCGA-43-5668-01 11 70176310 70176310 G T PPFIA1 Missense_Mutation p.R321I 0.24 deleterious(0) probably_damaging(0.993) TCGA-43-5668-01 11 74800671 74800671 G A OR2AT4 Missense_Mutation p.L30F 0.36 tolerated(0.19) benign(0.053) TCGA-43-5668-01 11 76257281 76257281 G T C11orf30 Missense_Mutation p.M1238I 0.06 tolerated_low_confidence(1) benign(0.001) TCGA-43-5668-01 11 76372296 76372296 G T LRRC32 Missense_Mutation p.A114E 0.28 tolerated(0.36) benign(0.004) TCGA-43-5668-01 11 76507479 76507479 G T TSKU Missense_Mutation p.E273D 0.39 tolerated(0.24) probably_damaging(0.996) TCGA-43-5668-01 11 7981912 7981912 A G NLRP10 Missense_Mutation p.L416P 0.15 deleterious(0) probably_damaging(1) TCGA-43-5668-01 11 8704324 8704324 T C RPL27A 5'UTR 0.12 TCGA-43-5668-01 11 92258043 92258043 C A FAT3 Missense_Mutation p.S1179Y 0.42 possibly_damaging(0.811) TCGA-43-5668-01 11 92532911 92532911 C G FAT3 Missense_Mutation p.S2244R 0.33 benign(0.023) TCGA-43-5668-01 12 104681162 104681162 T A TXNRD1 Intron 0.28 TCGA-43-5668-01 12 105151514 105151514 A G CHST11 Missense_Mutation p.Y331C 0.31 deleterious(0) probably_damaging(0.967) TCGA-43-5668-01 12 107393465 107393465 C A CRY1 Missense_Mutation p.R334L 0.34 deleterious(0.01) benign(0.235) TCGA-43-5668-01 12 108634306 108634306 C A WSCD2 Missense_Mutation p.H444N 0.31 tolerated(0.5) benign(0.305) TCGA-43-5668-01 12 115117336 115117336 C A TBX3 Missense_Mutation p.A280S 0.30 deleterious(0) probably_damaging(0.978) TCGA-43-5668-01 12 116549311 116549311 T A MED13L Missense_Mutation p.E106V 0.20 deleterious(0) unknown(0) TCGA-43-5668-01 12 121666570 121666570 G A P2RX4 Silent p.S232S 0.34 TCGA-43-5668-01 12 124212412 124212412 G A ATP6V0A2 Missense_Mutation p.V202M 0.34 deleterious(0.03) possibly_damaging(0.643) TCGA-43-5668-01 12 124950785 124950785 G C NCOR2 Silent p.P213P 0.27 TCGA-43-5668-01 12 21355512 21355512 C A SLCO1B1 Missense_Mutation p.A408D 0.32 deleterious(0) probably_damaging(0.948) TCGA-43-5668-01 12 23818466 23818466 G - SOX5 Frame_Shift_Del p.V282Yfs*37 0.33 TCGA-43-5668-01 12 2997321 2997321 G T RHNO1 Missense_Mutation p.G138V 0.42 deleterious(0.04) probably_damaging(0.964) TCGA-43-5668-01 12 46240701 46240701 G T ARID2 Nonsense_Mutation p.E521* 0.53 TCGA-43-5668-01 12 50355822 50355822 G T AQP5 Missense_Mutation p.V8L 0.42 tolerated(0.88) benign(0) TCGA-43-5668-01 12 50472763 50472763 G A ASIC1 Missense_Mutation p.D351N 0.12 deleterious(0.04) probably_damaging(0.948) TCGA-43-5668-01 12 51347861 51347861 C T HIGD1C Missense_Mutation p.P27L 0.36 tolerated(0.07) probably_damaging(0.999) TCGA-43-5668-01 12 52913994 52913994 G A KRT5 Silent p.R29R 0.55 TCGA-43-5668-01 12 53044194 53044194 G C KRT2 Silent p.L243L 0.34 TCGA-43-5668-01 12 55820349 55820349 T C OR6C76 Silent p.L104L 0.12 TCGA-43-5668-01 12 58127845 58127845 G C AGAP2 Missense_Mutation p.R505G 0.39 deleterious(0) benign(0.321) TCGA-43-5668-01 12 63987866 63987866 C A DPY19L2 Splice_Site p.X527_splice 0.46 TCGA-43-5668-01 12 65462643 65462643 C A WIF1 Missense_Mutation p.V147L 0.29 deleterious(0.01) probably_damaging(0.972) TCGA-43-5668-01 12 6703658 6703658 C G CHD4 Missense_Mutation p.Q760H 0.31 deleterious(0) benign(0.252) TCGA-43-5668-01 12 71960207 71960207 A G LGR5 Missense_Mutation p.Q294R 0.41 tolerated(0.11) benign(0.056) TCGA-43-5668-01 12 75444456 75444456 C A KCNC2 Missense_Mutation p.M443I 0.39 deleterious(0.03) probably_damaging(0.997) TCGA-43-5668-01 12 75444506 75444506 C G KCNC2 Missense_Mutation p.G427R 0.46 deleterious(0) probably_damaging(1) TCGA-43-5668-01 12 7647932 7647932 C A CD163 Nonsense_Mutation p.E389* 0.29 TCGA-43-5668-01 12 78513396 78513396 C G NAV3 Silent p.R1140R 0.42 TCGA-43-5668-01 12 78515843 78515843 G T NAV3 Silent p.P1291P 0.26 TCGA-43-5668-01 12 8083956 8083956 C A SLC2A3 Missense_Mutation p.G132V 0.29 deleterious(0) probably_damaging(0.993) TCGA-43-5668-01 12 862973 862973 G C WNK1 Missense_Mutation p.R81P 0.26 deleterious(0) unknown(0) TCGA-43-5668-01 13 19755891 19755891 G A TUBA3C 5'UTR 0.32 TCGA-43-5668-01 13 19755893 19755893 G T TUBA3C 5'UTR 0.33 TCGA-43-5668-01 13 21331602 21331602 C A N6AMT2 Nonsense_Mutation p.E46* 0.27 TCGA-43-5668-01 13 25670683 25670683 A C PABPC3 Missense_Mutation p.Y116S 0.28 deleterious(0) probably_damaging(0.936) TCGA-43-5668-01 13 26152955 26152955 T A ATP8A2 Missense_Mutation p.D595E 0.19 deleterious(0.01) possibly_damaging(0.88) TCGA-43-5668-01 13 36049108 36049108 G T MAB21L1 3'UTR 0.26 TCGA-43-5668-01 13 38137489 38137489 C T POSTN Missense_Mutation p.R831K 0.19 deleterious_low_confidence(0.03) probably_damaging(0.983) TCGA-43-5668-01 13 39264710 39264710 G T FREM2 Missense_Mutation p.V1077L 0.38 deleterious(0) probably_damaging(0.97) TCGA-43-5668-01 13 47011894 47011894 C T PPP1R2P4 RNA 0.15 TCGA-43-5668-01 13 67800109 67800109 C A PCDH9 Missense_Mutation p.G822C 0.31 deleterious(0.02) possibly_damaging(0.859) TCGA-43-5668-01 13 67802410 67802410 C T PCDH9 Missense_Mutation p.A55T 0.30 tolerated(0.53) benign(0.309) TCGA-43-5668-01 13 72147095 72147095 G T DACH1 Missense_Mutation p.S394R 0.21 possibly_damaging(0.66) TCGA-43-5668-01 13 73650080 73650080 A T KLF5 3'UTR 0.36 TCGA-43-5668-01 13 76427226 76427226 A T LMO7 Splice_Site p.X1222_splice 0.25 TCGA-43-5668-01 13 84454000 84454000 C A SLITRK1 Missense_Mutation p.G548V 0.33 deleterious(0.03) benign(0.036) TCGA-43-5668-01 13 95228567 95228567 C T TGDS Splice_Site p.X328_splice 0.24 TCGA-43-5668-01 13 96277157 96277157 C T DZIP1 Silent p.E279E 0.30 TCGA-43-5668-01 14 100173916 100173916 G A CYP46A1 Silent p.G198G 0.15 TCGA-43-5668-01 14 101348366 101348366 C A RTL1 Silent p.A920A 0.38 TCGA-43-5668-01 14 103416104 103416104 G A CDC42BPB Silent p.L1149L 0.40 TCGA-43-5668-01 14 105518189 105518189 C A GPR132 Silent p.L95L 0.17 TCGA-43-5668-01 14 106641665 106641665 G C IGHV1-18 Silent p.L83L 0.17 TCGA-43-5668-01 14 20404367 20404367 T A OR4K1 Missense_Mutation p.L181H 0.08 deleterious(0) probably_damaging(1) TCGA-43-5668-01 14 20444303 20444303 C A OR4K15 Missense_Mutation p.T209N 0.11 deleterious(0) possibly_damaging(0.876) TCGA-43-5668-01 14 21793152 21793152 C G RPGRIP1 Missense_Mutation p.T713S 0.11 deleterious(0.01) possibly_damaging(0.811) TCGA-43-5668-01 14 23889398 23889398 C T MYH7 Missense_Mutation p.A1128T 0.29 tolerated(0.29) possibly_damaging(0.808) TCGA-43-5668-01 14 24551685 24551685 G T NRL Missense_Mutation p.H125N 0.13 tolerated(0.18) benign(0.001) TCGA-43-5668-01 14 24612869 24612869 C T PSME2 Silent p.R188R 0.18 TCGA-43-5668-01 14 24724340 24724340 C A TGM1 Missense_Mutation p.V589L 0.16 tolerated(0.39) probably_damaging(0.941) TCGA-43-5668-01 14 29237218 29237218 C A FOXG1 Missense_Mutation p.H245N 0.21 deleterious(0.02) possibly_damaging(0.809) TCGA-43-5668-01 14 31099693 31099693 A T SCFD1 Missense_Mutation p.Y48F 0.28 tolerated(0.41) possibly_damaging(0.617) TCGA-43-5668-01 14 44974035 44974035 G T FSCB Missense_Mutation p.P719Q 0.11 deleterious(0.01) unknown(0) TCGA-43-5668-01 14 52735261 52735261 T C PTGDR Silent p.C243C 0.35 TCGA-43-5668-01 14 53100290 53100290 G C GPR137C Missense_Mutation p.G304R 0.37 deleterious(0) probably_damaging(0.998) TCGA-43-5668-01 14 74972757 74972757 C - LTBP2 Frame_Shift_Del p.A1391Lfs*100 0.31 TCGA-43-5668-01 14 75416087 75416087 C A PGF Silent p.P96P 0.14 TCGA-43-5668-01 14 76620929 76620929 G T GPATCH2L Missense_Mutation p.D75Y 0.15 deleterious(0.05) probably_damaging(1) TCGA-43-5668-01 14 77327101 77327101 G A C14orf166B Silent p.L390L 0.19 TCGA-43-5668-01 14 77706032 77706032 G C TMEM63C Missense_Mutation p.R298P 0.22 deleterious(0.01) possibly_damaging(0.905) TCGA-43-5668-01 14 81562988 81562988 T A TSHR Missense_Mutation p.L184Q 0.26 deleterious(0) probably_damaging(1) TCGA-43-5668-01 14 89061173 89061173 G T ZC3H14 Intron 0.21 TCGA-43-5668-01 14 89336410 89336410 A G TTC8 Missense_Mutation p.N306S 0.22 tolerated(0.1) probably_damaging(0.979) TCGA-43-5668-01 14 93273305 93273305 G T GOLGA5 Nonsense_Mutation p.E257* 0.29 TCGA-43-5668-01 14 94935745 94935745 G T SERPINA9 Missense_Mutation p.Q163K 0.11 deleterious(0.01) probably_damaging(0.991) TCGA-43-5668-01 14 94936147 94936148 - A SERPINA9 Frame_Shift_Ins p.A29Cfs*147 0.17 TCGA-43-5668-01 14 94964318 94964318 G T SERPINA12 Missense_Mutation p.F139L 0.13 deleterious(0) probably_damaging(1) TCGA-43-5668-01 14 95053730 95053730 C T SERPINA5 Missense_Mutation p.L11F 0.28 tolerated(0.1) probably_damaging(0.996) TCGA-43-5668-01 14 95679563 95679563 T C CLMN Missense_Mutation p.T201A 0.24 tolerated(0.07) probably_damaging(0.955) TCGA-43-5668-01 15 20193212 20193212 C A IGHV3OR15-7 Missense_Mutation p.C19F 0.26 deleterious_low_confidence(0) possibly_damaging(0.888) TCGA-43-5668-01 15 22369506 22369506 A T OR4M2 Nonsense_Mutation p.K311* 0.10 TCGA-43-5668-01 15 24921123 24921123 C A NPAP1 Silent p.R37R 0.25 TCGA-43-5668-01 15 25456849 25456849 C - SNORD115-22 3'Flank 0.21 TCGA-43-5668-01 15 26806186 26806186 C G GABRB3 Missense_Mutation p.A325P 0.26 deleterious(0) probably_damaging(0.984) TCGA-43-5668-01 15 33022978 33022978 C T GREM1 Silent p.S29S 0.46 TCGA-43-5668-01 15 33022979 33022979 C G GREM1 Missense_Mutation p.Q30E 0.43 tolerated(0.11) benign(0.297) TCGA-43-5668-01 15 40659933 40659933 C - DISP2 Frame_Shift_Del p.F542Sfs*10 0.31 TCGA-43-5668-01 15 45456010 45456010 A G DUOX1 Missense_Mutation p.Q1476R 0.40 deleterious(0) possibly_damaging(0.734) TCGA-43-5668-01 15 48726794 48726794 C T FBN1 Missense_Mutation p.E2205K 0.31 benign(0.424) TCGA-43-5668-01 15 50474976 50474976 G T SLC27A2 Missense_Mutation p.V118L 0.19 tolerated(0.45) benign(0.055) TCGA-43-5668-01 15 62228845 62228845 A T VPS13C Silent p.T1902T 0.29 TCGA-43-5668-01 15 68570955 68570955 A G FEM1B Missense_Mutation p.E67G 0.30 tolerated(0.23) benign(0.423) TCGA-43-5668-01 15 71184576 71184576 G A THAP10 Silent p.N12N 0.36 TCGA-43-5668-01 15 76430220 76430220 G C C15orf27 Missense_Mutation p.D71H 0.38 deleterious_low_confidence(0) possibly_damaging(0.718) TCGA-43-5668-01 15 79382708 79382708 C A RASGRF1 Missense_Mutation p.A45S 0.42 deleterious(0) benign(0.128) TCGA-43-5668-01 15 83936916 83936916 A G BNC1 Silent p.C56C 0.28 TCGA-43-5668-01 15 85383912 85383912 C G ALPK3 Missense_Mutation p.H670D 0.36 deleterious_low_confidence(0.02) benign(0.02) TCGA-43-5668-01 15 89401963 89401963 T C ACAN Silent p.T2049T 0.21 TCGA-43-5668-01 16 11145375 11145375 G A CLEC16A Silent p.K624K 0.22 TCGA-43-5668-01 16 12758889 12758889 T A CPPED1 Missense_Mutation p.I267F 0.05 deleterious(0) possibly_damaging(0.823) TCGA-43-5668-01 16 15815324 15815324 G T MYH11 Silent p.A1518A 0.23 TCGA-43-5668-01 16 1639764 1639764 C A IFT140 Missense_Mutation p.D218Y 0.36 deleterious(0) possibly_damaging(0.896) TCGA-43-5668-01 16 1823398 1823402 GCAGG - EME2 Frame_Shift_Del p.R58Gfs*73 0.56 TCGA-43-5668-01 16 20331035 20331035 A G GP2 Missense_Mutation p.I308T 0.26 deleterious(0.05) probably_damaging(0.989) TCGA-43-5668-01 16 20335424 20335424 C A GP2 Missense_Mutation p.Q83H 0.29 tolerated(0.14) benign(0.007) TCGA-43-5668-01 16 20429554 20429554 G T ACSM5 Silent p.P126P 0.25 TCGA-43-5668-01 16 20451701 20451701 T A ACSM5 Silent p.S564S 0.21 TCGA-43-5668-01 16 2161421 2161421 G A PKD1 Silent p.D1249D 0.19 TCGA-43-5668-01 16 23079561 23079561 C A USP31 Nonsense_Mutation p.G1289* 0.21 TCGA-43-5668-01 16 27078255 27078255 G C C16orf82 RNA 0.21 TCGA-43-5668-01 16 2806447 2806447 G T SRRM2 Missense_Mutation p.G28C 0.27 unknown(0) TCGA-43-5668-01 16 29824892 29824892 G T PRRT2 Nonsense_Mutation p.E173* 0.33 TCGA-43-5668-01 16 31374500 31374500 G T ITGAX Missense_Mutation p.W505C 0.24 deleterious(0.03) benign(0.304) TCGA-43-5668-01 16 32891012 32891012 G A SLC6A10P RNA 0.08 TCGA-43-5668-01 16 32891899 32891899 G T SLC6A10P RNA 0.41 TCGA-43-5668-01 16 3613666 3613666 A T NLRC3 Silent p.G471G 0.17 TCGA-43-5668-01 16 3823769 3823770 GG A CREBBP Frame_Shift_Del p.Q816Kfs*33 0.43 TCGA-43-5668-01 16 3900414 3900414 T C CREBBP Missense_Mutation p.T228A 0.27 benign(0.006) TCGA-43-5668-01 16 46741619 46741619 G T MYLK3 Silent p.P819P 0.28 TCGA-43-5668-01 16 49670792 49670792 C A ZNF423 Missense_Mutation p.W757C 0.22 tolerated(0.08) probably_damaging(0.939) TCGA-43-5668-01 16 49671126 49671126 C A ZNF423 Missense_Mutation p.S646I 0.35 tolerated(0.19) benign(0.371) TCGA-43-5668-01 16 5046873 5046873 C T SEC14L5 Silent p.H266H 0.22 TCGA-43-5668-01 16 51174144 51174144 C A SALL1 Missense_Mutation p.L663F 0.32 deleterious(0.01) benign(0.361) TCGA-43-5668-01 16 51175307 51175307 G A SALL1 Nonsense_Mutation p.R276* 0.22 TCGA-43-5668-01 16 5127927 5127927 A C ALG1 Missense_Mutation p.K217Q 0.23 deleterious(0.02) possibly_damaging(0.691) TCGA-43-5668-01 16 52480035 52480035 C A TOX3 Silent p.V259V 0.16 TCGA-43-5668-01 16 54967505 54967505 C T IRX5 Missense_Mutation p.P391L 0.21 tolerated(0.24) unknown(0) TCGA-43-5668-01 16 56535369 56535369 C T BBS2 Missense_Mutation p.R374Q 0.24 tolerated(0.35) benign(0.06) TCGA-43-5668-01 16 56670808 56670808 G T MT1M 3'Flank 0.26 TCGA-43-5668-01 16 57449013 57449013 C A CCL17 Silent p.R31R 0.33 TCGA-43-5668-01 16 57695777 57695777 G T GPR56 Silent p.L617L 0.29 TCGA-43-5668-01 16 57732937 57732937 G T CCDC135 Splice_Site p.X126_splice 0.21 TCGA-43-5668-01 16 61891022 61891022 C G CDH8 Splice_Site p.X223_splice 0.23 TCGA-43-5668-01 16 64982512 64982512 C T CDH11 Intron 0.24 TCGA-43-5668-01 16 7568385 7568385 C G RBFOX1 Silent p.T108T 0.21 TCGA-43-5668-01 16 772659 772659 C T CCDC78 3'UTR 0.33 TCGA-43-5668-01 16 84075715 84075715 G A SLC38A8 Silent p.H16H 0.09 TCGA-43-5668-01 17 10353910 10353910 C T MYH4 Silent p.L1347L 0.30 TCGA-43-5668-01 17 11583238 11583238 T C DNAH9 Missense_Mutation p.I1173T 0.16 possibly_damaging(0.548) TCGA-43-5668-01 17 11726142 11726142 A T DNAH9 Nonsense_Mutation p.K3013* 0.39 TCGA-43-5668-01 17 14110505 14110505 G T COX10 Missense_Mutation p.G436V 0.32 tolerated_low_confidence(0.13) unknown(0) TCGA-43-5668-01 17 16320888 16320888 C A TRPV2 5'UTR 0.43 TCGA-43-5668-01 17 1633693 1633693 C T WDR81 Silent p.V1229V 0.25 TCGA-43-5668-01 17 16722922 16722922 G A AC022596.6 RNA 0.10 TCGA-43-5668-01 17 21205556 21205556 G A MAP2K3 Silent p.G167G 0.15 TCGA-43-5668-01 17 21731582 21731582 G T UBBP4 Silent p.L219L 0.11 TCGA-43-5668-01 17 26603915 26603915 A T AC061975.8 5'Flank 0.23 TCGA-43-5668-01 17 26817360 26817360 C A SLC13A2 Missense_Mutation p.S89R 0.29 tolerated_low_confidence(0.39) benign(0) TCGA-43-5668-01 17 29195408 29195408 A C ATAD5 Silent p.G1097G 0.37 TCGA-43-5668-01 17 33520778 33520778 C A SLC35G3 Silent p.G183G 0.21 TCGA-43-5668-01 17 35295441 35295441 G T LHX1 5'UTR 0.18 TCGA-43-5668-01 17 36499258 36499258 C A GPR179 Nonsense_Mutation p.E139* 0.15 TCGA-43-5668-01 17 37009248 37009248 G T RPL23 Intron 0.19 TCGA-43-5668-01 17 39579038 39579038 G C KRT37 Missense_Mutation p.H242D 0.17 deleterious(0.01) possibly_damaging(0.614) TCGA-43-5668-01 17 40642586 40642586 A T ATP6V0A1 Nonsense_Mutation p.K376* 0.21 TCGA-43-5668-01 17 41215391 41215391 C T BRCA1 Splice_Site p.X1739_splice 0.30 TCGA-43-5668-01 17 42475947 42475947 C A GPATCH8 Missense_Mutation p.L1166F 0.26 deleterious(0.02) unknown(0) TCGA-43-5668-01 17 4437098 4437098 G - SPNS2 Frame_Shift_Del p.E433Rfs*53 0.13 TCGA-43-5668-01 17 46691964 46691964 G T HOXB8 Silent p.R35R 0.17 TCGA-43-5668-01 17 48596332 48596332 T C MYCBPAP Intron 0.38 TCGA-43-5668-01 17 48629453 48629453 G T SPATA20 Missense_Mutation p.Q623H 0.14 deleterious(0) probably_damaging(0.993) TCGA-43-5668-01 17 48629454 48629454 G T SPATA20 Missense_Mutation p.D624Y 0.14 deleterious(0) probably_damaging(0.998) TCGA-43-5668-01 17 5041503 5041503 T A USP6 Missense_Mutation p.V338E 0.31 deleterious_low_confidence(0) benign(0.403) TCGA-43-5668-01 17 51901800 51901800 C A KIF2B Missense_Mutation p.A469E 0.24 deleterious(0) probably_damaging(1) TCGA-43-5668-01 17 56247027 56247027 G A OR4D2 Missense_Mutation p.G4E 0.19 tolerated(0.85) benign(0.005) TCGA-43-5668-01 17 56349029 56349029 G A MPO Missense_Mutation p.R673W 0.22 deleterious(0) probably_damaging(1) TCGA-43-5668-01 17 58511040 58511040 A T C17orf64 3'Flank 0.25 TCGA-43-5668-01 17 60348785 60348785 C T TBC1D3P2 RNA 0.18 TCGA-43-5668-01 17 61987801 61987801 C A CSHL1 Missense_Mutation p.M95I 0.27 deleterious(0) benign(0.222) TCGA-43-5668-01 17 61994599 61994599 G A GH1 3'UTR 0.19 TCGA-43-5668-01 17 61995183 61995183 G A GH1 Silent p.A131A 0.27 TCGA-43-5668-01 17 62049162 62049162 C A SCN4A Silent p.L177L 0.33 TCGA-43-5668-01 17 63185418 63185418 T C RGS9 Silent p.V223V 0.15 TCGA-43-5668-01 17 66864201 66864201 A T ABCA8 3'UTR 0.12 TCGA-43-5668-01 17 7097029 7097029 T A DLG4 Silent p.R559R 0.31 TCGA-43-5668-01 17 74391933 74391933 G A UBE2O Missense_Mutation p.S940F 0.41 tolerated(0.6) benign(0.157) TCGA-43-5668-01 17 7556735 7556735 C G ATP1B2 Silent p.T52T 0.32 TCGA-43-5668-01 17 7577120 7577120 C A TP53 Missense_Mutation p.R273L 0.28 deleterious(0) probably_damaging(0.993) TCGA-43-5668-01 17 77073871 77073871 G T ENGASE Missense_Mutation p.R114L 0.27 deleterious(0) probably_damaging(0.993) TCGA-43-5668-01 17 77079880 77079880 A T ENGASE Missense_Mutation p.Q430L 0.22 deleterious(0) probably_damaging(0.999) TCGA-43-5668-01 17 80847546 80847546 C A TBCD Silent p.A512A 0.07 TCGA-43-5668-01 18 21739691 21739691 A G CABYR Missense_Mutation p.N266S 0.07 tolerated(0.18) benign(0.142) TCGA-43-5668-01 18 22057539 22057539 C A HRH4 3'UTR 0.31 TCGA-43-5668-01 18 24436152 24436152 C A AQP4 3'UTR 0.32 TCGA-43-5668-01 18 25585835 25585835 T A CDH2 Silent p.T275T 0.38 TCGA-43-5668-01 18 28923448 28923448 G A DSG1 Missense_Mutation p.G575S 0.15 tolerated(0.25) probably_damaging(0.914) TCGA-43-5668-01 18 31324241 31324241 C T ASXL3 Missense_Mutation p.H1477Y 0.20 possibly_damaging(0.541) TCGA-43-5668-01 18 33722805 33722805 A T ELP2 Silent p.L289L 0.17 TCGA-43-5668-01 18 34322742 34322742 C A FHOD3 Missense_Mutation p.Q1093K 0.17 deleterious(0.04) possibly_damaging(0.832) TCGA-43-5668-01 18 42530417 42530417 G A SETBP1 Missense_Mutation p.G371D 0.11 tolerated(0.2) benign(0.049) TCGA-43-5668-01 18 43577752 43577752 C A PSTPIP2 Missense_Mutation p.R202L 0.17 deleterious(0) possibly_damaging(0.852) TCGA-43-5668-01 18 44560078 44560078 G T TCEB3B Missense_Mutation p.P520T 0.16 tolerated(1) benign(0.001) TCGA-43-5668-01 18 55221491 55221491 C A FECH Splice_Site p.X365_splice 0.19 TCGA-43-5668-01 18 59854895 59854895 G T KIAA1468 Missense_Mutation p.G53C 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.715) TCGA-43-5668-01 18 60028957 60028957 G A TNFRSF11A Missense_Mutation p.A221T 0.15 tolerated(0.4) benign(0) TCGA-43-5668-01 18 60609017 60609017 G C PHLPP1 Missense_Mutation p.E1009D 0.24 tolerated(0.32) benign(0.138) TCGA-43-5668-01 18 61306466 61306466 G A SERPINB4 Silent p.L241L 0.05 TCGA-43-5668-01 18 61310792 61310792 G C SERPINB4 Missense_Mutation p.A7G 0.16 deleterious(0.02) possibly_damaging(0.707) TCGA-43-5668-01 18 76754395 76754395 G A SALL3 Missense_Mutation p.E802K 0.24 deleterious(0) benign(0.189) TCGA-43-5668-01 18 76754397 76754397 G A SALL3 Silent p.E802E 0.25 TCGA-43-5668-01 18 76755125 76755125 C A SALL3 Missense_Mutation p.P1045H 0.09 deleterious(0) probably_damaging(0.971) TCGA-43-5668-01 19 11289130 11289130 G C KANK2 Missense_Mutation p.P479A 0.33 tolerated(0.75) benign(0.024) TCGA-43-5668-01 19 12089327 12089327 G T ZNF763 Silent p.G199G 0.51 TCGA-43-5668-01 19 13011312 13011312 C T SYCE2 Missense_Mutation p.V153M 0.17 tolerated(0.17) possibly_damaging(0.801) TCGA-43-5668-01 19 15574963 15574963 C A RASAL3 Silent p.R69R 0.69 TCGA-43-5668-01 19 15839146 15839146 C A OR10H2 Missense_Mutation p.A98D 0.42 deleterious(0) possibly_damaging(0.461) TCGA-43-5668-01 19 17184097 17184097 A - HAUS8 Frame_Shift_Del p.D26Efs*9 0.09 TCGA-43-5668-01 19 17405196 17405196 G A ABHD8 Silent p.G350G 0.07 TCGA-43-5668-01 19 20728472 20728472 G A ZNF737 Silent p.G179G 0.43 TCGA-43-5668-01 19 21240824 21240824 G A ZNF430 Missense_Mutation p.M570I 0.48 tolerated_low_confidence(0.41) benign(0.004) TCGA-43-5668-01 19 22574527 22574527 G T ZNF98 Missense_Mutation p.H504N 0.70 tolerated(0.45) benign(0.001) TCGA-43-5668-01 19 22952052 22952052 C T ZNF99 Silent p.Q26Q 0.66 TCGA-43-5668-01 19 2799758 2799758 G C THOP1 Silent p.T186T 0.08 TCGA-43-5668-01 19 31039578 31039578 C G ZNF536 Missense_Mutation p.L1018V 0.72 deleterious(0) probably_damaging(0.99) TCGA-43-5668-01 19 33587209 33587209 G T GPATCH1 Missense_Mutation p.A237S 0.60 deleterious(0.01) benign(0.071) TCGA-43-5668-01 19 37905157 37905157 T G ZNF569 Missense_Mutation p.N135H 0.54 deleterious(0.02) benign(0.172) TCGA-43-5668-01 19 38912755 38912755 C A RASGRP4 Missense_Mutation p.R21L 0.61 deleterious(0.01) possibly_damaging(0.491) TCGA-43-5668-01 19 39019676 39019676 G T RYR1 Missense_Mutation p.R3707L 0.39 benign(0.005) TCGA-43-5668-01 19 41825636 41825636 C T CCDC97 Silent p.L220L 0.65 TCGA-43-5668-01 19 43258691 43258691 G T PSG8 Nonsense_Mutation p.S346* 0.59 TCGA-43-5668-01 19 43683099 43683099 G T PSG5 Intron 0.52 TCGA-43-5668-01 19 47192836 47192836 C A PRKD2 Missense_Mutation p.K643N 0.58 tolerated(0.12) benign(0.419) TCGA-43-5668-01 19 47575179 47575179 C A ZC3H4 Missense_Mutation p.G668C 0.68 unknown(0) TCGA-43-5668-01 19 47951365 47951365 G A SLC8A2 Silent p.G488G 0.37 TCGA-43-5668-01 19 49557609 49557609 G T CGB7 Missense_Mutation p.P146H 0.47 deleterious_low_confidence(0.03) possibly_damaging(0.756) TCGA-43-5668-01 19 49842171 49842171 C A CD37 Missense_Mutation p.A221E 0.53 tolerated(0.5) benign(0.032) TCGA-43-5668-01 19 50978671 50978671 C A FAM71E1 Silent p.G134G 0.56 TCGA-43-5668-01 19 51021570 51021570 C A LRRC4B Missense_Mutation p.G467V 0.52 tolerated_low_confidence(0.11) benign(0.128) TCGA-43-5668-01 19 51527457 51527457 G A KLK11 Missense_Mutation p.P135S 0.56 tolerated(0.28) probably_damaging(0.935) TCGA-43-5668-01 19 51656526 51656526 T A SIGLEC7 3'UTR 0.79 TCGA-43-5668-01 19 51918210 51918210 T A SIGLEC10 Missense_Mutation p.T495S 0.55 tolerated(0.09) possibly_damaging(0.732) TCGA-43-5668-01 19 52133167 52133167 C A SIGLEC5 Nonsense_Mutation p.G114* 0.49 TCGA-43-5668-01 19 52217094 52217094 C A HAS1 Silent p.V441V 0.67 TCGA-43-5668-01 19 52505063 52505063 C A ZNF615 Intron 0.47 TCGA-43-5668-01 19 53208581 53208581 C A ZNF611 Missense_Mutation p.S576I 0.65 tolerated(0.28) possibly_damaging(0.723) TCGA-43-5668-01 19 5456269 5456269 G C ZNRF4 Missense_Mutation p.W256S 0.30 deleterious(0.03) possibly_damaging(0.841) TCGA-43-5668-01 19 54710345 54710345 G T RPS9 Intron 0.64 TCGA-43-5668-01 19 56296913 56296913 G T NLRP11 3'UTR 0.64 TCGA-43-5668-01 19 56953880 56953880 G A ZNF667 Missense_Mutation p.H162Y 0.65 deleterious(0) probably_damaging(0.996) TCGA-43-5668-01 19 57840469 57840469 G C ZNF543 Missense_Mutation p.G547R 0.46 tolerated(0.13) benign(0) TCGA-43-5668-01 19 58864738 58864738 G T A1BG Intron 0.59 TCGA-43-5668-01 19 9677404 9677404 T A ZNF121 Missense_Mutation p.T129S 0.23 tolerated(0.2) possibly_damaging(0.46) TCGA-43-5668-01 1 108115894 108115894 G C VAV3 3'UTR 0.29 TCGA-43-5668-01 1 111494390 111494390 T A LRIF1 Silent p.T372T 0.13 TCGA-43-5668-01 1 115399895 115399895 A T SYCP1 Missense_Mutation p.Q79L 0.20 tolerated(0.08) possibly_damaging(0.661) TCGA-43-5668-01 1 115537564 115537564 G C SYCP1 Missense_Mutation p.R952P 0.33 deleterious(0.04) benign(0.012) TCGA-43-5668-01 1 117527364 117527364 G T PTGFRN Missense_Mutation p.V744L 0.32 deleterious(0.02) benign(0.046) TCGA-43-5668-01 1 118035780 118035780 G T MAN1A2 Missense_Mutation p.V394F 0.29 deleterious(0) benign(0.062) TCGA-43-5668-01 1 152275921 152275921 C T FLG Missense_Mutation p.R3814H 0.12 unknown(0) TCGA-43-5668-01 1 152285992 152285992 C A FLG Missense_Mutation p.R457L 0.12 possibly_damaging(0.863) TCGA-43-5668-01 1 152484386 152484386 C A LCE5A 3'UTR 0.22 TCGA-43-5668-01 1 152732892 152732892 G T KPRP Missense_Mutation p.E276D 0.16 tolerated(0.17) benign(0.034) TCGA-43-5668-01 1 153631258 153631258 G T SNAPIN Silent p.G13G 0.27 TCGA-43-5668-01 1 15420716 15420716 C A KAZN Missense_Mutation p.S421R 0.13 tolerated(0.23) benign(0.001) TCGA-43-5668-01 1 155584471 155584471 C T MSTO1 3'UTR 0.41 TCGA-43-5668-01 1 155735075 155735075 G A GON4L Missense_Mutation p.P1397S 0.12 tolerated_low_confidence(0.16) probably_damaging(0.932) TCGA-43-5668-01 1 15788058 15788058 C G CELA2A Silent p.V44V 0.17 TCGA-43-5668-01 1 158436059 158436059 G T OR10K1 Missense_Mutation p.K236N 0.15 deleterious(0) possibly_damaging(0.9) TCGA-43-5668-01 1 158648278 158648278 A G SPTA1 Missense_Mutation p.V242A 0.11 deleterious(0) probably_damaging(0.999) TCGA-43-5668-01 1 158815668 158815668 G T MNDA Missense_Mutation p.D288Y 0.13 deleterious(0) possibly_damaging(0.883) TCGA-43-5668-01 1 16358208 16358208 C A CLCNKA Silent p.S542S 0.30 TCGA-43-5668-01 1 165322360 165322360 G A LMX1A Silent p.T72T 0.32 TCGA-43-5668-01 1 165513549 165513549 G T LRRC52 Missense_Mutation p.G6C 0.12 deleterious_low_confidence(0.01) probably_damaging(0.917) TCGA-43-5668-01 1 167097464 167097464 C A DUSP27 Silent p.S1032S 0.26 TCGA-43-5668-01 1 173569255 173569255 C A SLC9C2 Splice_Site p.X76_splice 0.18 TCGA-43-5668-01 1 175375592 175375592 C A TNR Missense_Mutation p.A87S 0.08 tolerated(0.4) benign(0.019) TCGA-43-5668-01 1 17596852 17596852 C A PADI3 Silent p.A259A 0.13 TCGA-43-5668-01 1 17660457 17660457 G T PADI4 Missense_Mutation p.G98V 0.19 deleterious(0.01) benign(0.29) TCGA-43-5668-01 1 176838113 176838113 C A ASTN1 Nonsense_Mutation p.E1172* 0.12 TCGA-43-5668-01 1 177249890 177249890 G T BRINP2 Missense_Mutation p.E526D 0.18 deleterious(0.04) probably_damaging(0.978) TCGA-43-5668-01 1 177250164 177250164 G C BRINP2 Missense_Mutation p.V618L 0.19 tolerated(1) benign(0.006) TCGA-43-5668-01 1 180366651 180366651 C A ACBD6 Missense_Mutation p.Q221H 0.11 deleterious(0) probably_damaging(0.99) TCGA-43-5668-01 1 181727124 181727124 C A CACNA1E Silent p.T1457T 0.09 TCGA-43-5668-01 1 182642059 182642059 C A RGS8 5'Flank 0.19 TCGA-43-5668-01 1 186076015 186076015 G A HMCN1 Splice_Site p.X3591_splice 0.14 TCGA-43-5668-01 1 186329965 186329965 T A TPR Missense_Mutation p.E344V 0.16 benign(0.403) TCGA-43-5668-01 1 19062446 19062446 G T PAX7 Missense_Mutation p.M492I 0.13 tolerated_low_confidence(0.06) benign(0) TCGA-43-5668-01 1 19212005 19212005 G A ALDH4A1 Missense_Mutation p.R139C 0.38 deleterious(0.02) possibly_damaging(0.77) TCGA-43-5668-01 1 19212006 19212006 C G ALDH4A1 Silent p.P138P 0.36 TCGA-43-5668-01 1 193149618 193149618 G C B3GALT2 Missense_Mutation p.P359A 0.10 tolerated(0.08) possibly_damaging(0.85) TCGA-43-5668-01 1 19451160 19451160 C A UBR4 Missense_Mutation p.A3155S 0.08 benign(0.179) TCGA-43-5668-01 1 19666102 19666102 C A CAPZB 3'UTR 0.20 TCGA-43-5668-01 1 201915297 201915297 G A LMOD1 Nonsense_Mutation p.Q58* 0.24 TCGA-43-5668-01 1 202276493 202276493 C A LGR6 Missense_Mutation p.P415H 0.23 deleterious(0) probably_damaging(0.987) TCGA-43-5668-01 1 203472827 203472827 C A OPTC Silent p.L326L 0.19 TCGA-43-5668-01 1 205039104 205039104 G T CNTN2 Silent p.T782T 0.14 TCGA-43-5668-01 1 20517959 20517959 G T UBXN10 3'UTR 0.27 TCGA-43-5668-01 1 205306498 205306498 C T KLHDC8A 3'UTR 0.25 TCGA-43-5668-01 1 207741317 207741317 C G CR1 Silent p.T1367T 0.13 TCGA-43-5668-01 1 207850749 207850749 C A CR1L Missense_Mutation p.P38Q 0.16 deleterious(0.02) probably_damaging(1) TCGA-43-5668-01 1 209880159 209880159 C T HSD11B1 Missense_Mutation p.L109F 0.15 tolerated(0.53) benign(0.04) TCGA-43-5668-01 1 209948944 209948944 C A TRAF3IP3 Silent p.R306R 0.16 TCGA-43-5668-01 1 212788546 212788546 G A ATF3 Silent p.A61A 0.19 TCGA-43-5668-01 1 214170585 214170585 G T PROX1 Missense_Mutation p.R236L 0.13 tolerated(0.17) possibly_damaging(0.653) TCGA-43-5668-01 1 215844535 215844535 G T USH2A Missense_Mutation p.P4638T 0.16 probably_damaging(0.996) TCGA-43-5668-01 1 216462640 216462640 A T USH2A Silent p.G651G 0.19 TCGA-43-5668-01 1 216741400 216741400 G T ESRRG Nonsense_Mutation p.Y215* 0.12 TCGA-43-5668-01 1 217842374 217842374 G C SPATA17 Splice_Site p.X81_splice 0.16 TCGA-43-5668-01 1 221912285 221912285 C A DUSP10 Missense_Mutation p.V268L 0.09 tolerated(0.42) benign(0.06) TCGA-43-5668-01 1 222700356 222700356 G T HHIPL2 Missense_Mutation p.A587D 0.24 deleterious(0) possibly_damaging(0.891) TCGA-43-5668-01 1 222715457 222715457 C A HHIPL2 Missense_Mutation p.G339C 0.12 deleterious(0) probably_damaging(0.998) TCGA-43-5668-01 1 223178402 223178402 C T DISP1 Silent p.N1221N 0.13 TCGA-43-5668-01 1 223989849 223989849 G A TP53BP2 Silent p.N398N 0.15 TCGA-43-5668-01 1 228469829 228469829 A T OBSCN Missense_Mutation p.E3227V 0.31 possibly_damaging(0.699) TCGA-43-5668-01 1 228487724 228487724 A G OBSCN Missense_Mutation p.Y4539C 0.17 probably_damaging(0.93) TCGA-43-5668-01 1 230979363 230979363 C A C1orf198 Nonsense_Mutation p.E222* 0.12 TCGA-43-5668-01 1 232575113 232575113 T A SIPA1L2 Missense_Mutation p.I1258F 0.13 deleterious(0.01) benign(0.236) TCGA-43-5668-01 1 232579347 232579347 C A SIPA1L2 Splice_Site p.X1146_splice 0.18 TCGA-43-5668-01 1 236645625 236645625 G T EDARADD Silent p.R108R 0.21 TCGA-43-5668-01 1 237941988 237941988 A G RYR2 Missense_Mutation p.Q3933R 0.18 probably_damaging(0.988) TCGA-43-5668-01 1 237947713 237947713 C G RYR2 Missense_Mutation p.A4234G 0.20 benign(0) TCGA-43-5668-01 1 240978064 240978064 T G RGS7 Missense_Mutation p.Q266P 0.11 deleterious(0.04) probably_damaging(0.976) TCGA-43-5668-01 1 241753539 241753539 G A KMO Missense_Mutation p.V412M 0.14 tolerated(0.22) benign(0.064) TCGA-43-5668-01 1 247902640 247902640 C A OR14K1 Missense_Mutation p.H242N 0.09 deleterious(0) possibly_damaging(0.75) TCGA-43-5668-01 1 248031145 248031145 A T TRIM58 Splice_Site p.X250_splice 0.19 TCGA-43-5668-01 1 248436853 248436853 C A OR2T33 Missense_Mutation p.K88N 0.14 tolerated(0.18) benign(0.019) TCGA-43-5668-01 1 248685066 248685066 T C OR2G6 Missense_Mutation p.L40P 0.15 deleterious(0) possibly_damaging(0.62) TCGA-43-5668-01 1 249211704 249211704 G T PGBD2 Silent p.V307V 0.10 TCGA-43-5668-01 1 25627436 25627436 G A RHD Splice_Site p.X163_splice 0.12 TCGA-43-5668-01 1 27480681 27480681 A C SLC9A1 Missense_Mutation p.S49A 0.20 tolerated_low_confidence(0.59) benign(0) TCGA-43-5668-01 1 29475183 29475183 G A SRSF4 Silent p.S408S 0.28 TCGA-43-5668-01 1 34123686 34123686 C T CSMD2 Missense_Mutation p.R1396Q 0.28 deleterious(0) probably_damaging(0.979) TCGA-43-5668-01 1 35223426 35223426 C T GJB5 Silent p.H165H 0.27 TCGA-43-5668-01 1 39823534 39823534 C G MACF1 Missense_Mutation p.A1909G 0.55 possibly_damaging(0.749) TCGA-43-5668-01 1 43897158 43897158 G T SZT2 Silent p.T1627T 0.10 TCGA-43-5668-01 1 45120240 45120240 G A TMEM53 Silent p.V275V 0.07 TCGA-43-5668-01 1 47882444 47882444 G A FOXE3 Missense_Mutation p.D153N 0.19 deleterious(0) probably_damaging(0.989) TCGA-43-5668-01 1 53986384 53986384 T C GLIS1 Missense_Mutation p.Q375R 0.21 deleterious(0.03) benign(0.26) TCGA-43-5668-01 1 57383237 57383237 G T C8A Splice_Site p.X535_splice 0.36 TCGA-43-5668-01 1 57383238 57383238 G T C8A Missense_Mutation p.G535V 0.35 deleterious(0.03) benign(0.21) TCGA-43-5668-01 1 59248409 59248409 C G JUN Missense_Mutation p.E112Q 0.24 deleterious(0.02) probably_damaging(0.99) TCGA-43-5668-01 1 63329799 63329799 G C ATG4C Missense_Mutation p.R449T 0.26 deleterious(0.04) benign(0.018) TCGA-43-5668-01 1 6341204 6341204 C T ACOT7 Silent p.S334S 0.12 TCGA-43-5668-01 1 65855081 65855081 A G DNAJC6 Missense_Mutation p.S446G 0.29 deleterious(0.02) benign(0.201) TCGA-43-5668-01 1 70291484 70291484 G T LRRC7 Nonsense_Mutation p.E121* 0.08 TCGA-43-5668-01 1 70493891 70493891 C G LRRC7 Missense_Mutation p.P573R 0.20 deleterious(0) probably_damaging(0.999) TCGA-43-5668-01 1 71477799 71477799 A G PTGER3 Intron 0.11 TCGA-43-5668-01 1 71478136 71478136 G A PTGER3 Missense_Mutation p.T310I 0.12 tolerated(0.06) benign(0.088) TCGA-43-5668-01 1 74832986 74832986 A G FPGT-TNNI3K Silent p.Q522Q 0.17 TCGA-43-5668-01 1 76254853 76254853 A T RABGGTB Missense_Mutation p.M41L 0.14 tolerated(1) benign(0) TCGA-43-5668-01 1 76280782 76280782 T A MSH4 Missense_Mutation p.I259K 0.15 tolerated(0.06) benign(0.063) TCGA-43-5668-01 1 76387916 76387916 T - ASB17 Frame_Shift_Del p.N177Tfs*7 0.11 TCGA-43-5668-01 1 78099011 78099011 G C ZZZ3 Missense_Mutation p.T10R 0.28 deleterious(0) probably_damaging(0.999) TCGA-43-5668-01 1 79101166 79101166 A T IFI44L Nonsense_Mutation p.R290* 0.12 TCGA-43-5668-01 1 79402025 79402025 A T ELTD1 Missense_Mutation p.Y278N 0.11 tolerated(0.26) benign(0.008) TCGA-43-5668-01 1 86590959 86590959 G T COL24A1 Missense_Mutation p.H354N 0.12 tolerated(0.45) benign(0.039) TCGA-43-5668-01 1 89834177 89834177 G T GBP6 Missense_Mutation p.V23L 0.12 deleterious(0.02) possibly_damaging(0.651) TCGA-43-5668-01 1 94668516 94668516 C A ARHGAP29 Missense_Mutation p.R304S 0.09 deleterious(0) probably_damaging(0.996) TCGA-43-5668-01 20 1552405 1552405 G A SIRPB1 Missense_Mutation p.P238S 0.54 deleterious(0.02) benign(0.128) TCGA-43-5668-01 20 21376611 21376611 C A NKX2-4 Missense_Mutation p.A335S 0.25 tolerated(0.67) benign(0.364) TCGA-43-5668-01 20 2384224 2384224 C A TGM6 Intron 0.33 TCGA-43-5668-01 20 26084078 26084078 G T NCOR1P1 RNA 0.14 TCGA-43-5668-01 20 30753302 30753302 G A TM9SF4 3'UTR 0.19 TCGA-43-5668-01 20 30898728 30898728 G C KIF3B Missense_Mutation p.R383P 0.20 tolerated(0.06) benign(0.049) TCGA-43-5668-01 20 31894774 31894774 C A BPIFB1 Missense_Mutation p.A459D 0.26 deleterious(0) possibly_damaging(0.851) TCGA-43-5668-01 20 33874999 33874999 G A FAM83C Missense_Mutation p.T528I 0.21 deleterious_low_confidence(0) benign(0.303) TCGA-43-5668-01 20 33875022 33875022 C T FAM83C Silent p.V520V 0.25 TCGA-43-5668-01 20 33876313 33876313 C T FAM83C Missense_Mutation p.E253K 0.20 deleterious(0) probably_damaging(0.999) TCGA-43-5668-01 20 36989406 36989406 C A LBP Missense_Mutation p.L213I 0.22 deleterious(0.05) probably_damaging(0.996) TCGA-43-5668-01 20 3766827 3766827 C A CENPB Nonsense_Mutation p.E102* 0.38 TCGA-43-5668-01 20 40102043 40102043 C A CHD6 Silent p.A861A 0.26 TCGA-43-5668-01 20 40739007 40739007 G A PTPRT Missense_Mutation p.P1074S 0.17 deleterious(0) possibly_damaging(0.522) TCGA-43-5668-01 20 40827935 40827935 G T PTPRT Missense_Mutation p.S812R 0.27 deleterious(0.03) benign(0.101) TCGA-43-5668-01 20 43135617 43135617 C A SERINC3 Missense_Mutation p.A212S 0.28 deleterious(0.04) benign(0.016) TCGA-43-5668-01 20 43977007 43977007 C A SDC4 Silent p.L6L 0.38 TCGA-43-5668-01 20 44444350 44444350 G T UBE2C Missense_Mutation p.R129S 0.25 tolerated(0.1) probably_damaging(0.998) TCGA-43-5668-01 20 44642296 44642296 G T MMP9 Silent p.G537G 0.26 TCGA-43-5668-01 20 44666000 44666000 C A SLC12A5 Silent p.I219I 0.24 TCGA-43-5668-01 20 47741135 47741135 G - STAU1 Intron 0.18 TCGA-43-5668-01 20 48252856 48252856 T A B4GALT5 Missense_Mutation p.E387V 0.06 deleterious_low_confidence(0) possibly_damaging(0.52) TCGA-43-5668-01 20 590488 590488 C A TCF15 Missense_Mutation p.D132Y 0.44 deleterious(0) possibly_damaging(0.786) TCGA-43-5668-01 20 590489 590489 G C TCF15 Silent p.G131G 0.44 TCGA-43-5668-01 20 60348181 60348181 C G CDH4 Missense_Mutation p.I173M 0.23 deleterious(0) probably_damaging(0.999) TCGA-43-5668-01 20 61291766 61291766 C T SLCO4A1 Missense_Mutation p.T297M 0.50 tolerated(0.11) possibly_damaging(0.719) TCGA-43-5668-01 20 61833927 61833927 G A YTHDF1 Silent p.P455P 0.11 TCGA-43-5668-01 20 62192207 62192207 G A HELZ2 Missense_Mutation p.R2408W 0.12 deleterious(0) probably_damaging(0.976) TCGA-43-5668-01 20 9523318 9523318 T G PAK7 Missense_Mutation p.E640A 0.44 deleterious(0) probably_damaging(0.996) TCGA-43-5668-01 21 10933867 10933867 A T TPTE Missense_Mutation p.C338S 0.17 deleterious(0) probably_damaging(1) TCGA-43-5668-01 21 31709432 31709432 G T KRTAP27-1 Silent p.L185L 0.38 TCGA-43-5668-01 21 32119426 32119426 C A KRTAP21-2 Missense_Mutation p.G32V 0.37 deleterious_low_confidence(0.04) unknown(0) TCGA-43-5668-01 21 33044451 33044451 G T SCAF4 Missense_Mutation p.P902H 0.38 unknown(0) TCGA-43-5668-01 21 43531513 43531513 C A UMODL1 Missense_Mutation p.N727K 0.39 tolerated(0.92) possibly_damaging(0.607) TCGA-43-5668-01 21 46078055 46078055 C A KRTAP12-3 Silent p.S53S 0.29 TCGA-43-5668-01 22 16449018 16449018 C A OR11H1 Missense_Mutation p.V263L 0.22 deleterious(0.01) benign(0.311) TCGA-43-5668-01 22 19384447 19384447 G A HIRA Missense_Mutation p.H173Y 0.18 deleterious(0) probably_damaging(0.993) TCGA-43-5668-01 22 19502550 19502550 G C CDC45 Silent p.L505L 0.26 TCGA-43-5668-01 22 20760522 20760522 A G ZNF74 Missense_Mutation p.H400R 0.17 tolerated(0.76) probably_damaging(0.991) TCGA-43-5668-01 22 23438181 23438181 G T GNAZ Missense_Mutation p.R100L 0.24 tolerated(0.09) benign(0.039) TCGA-43-5668-01 22 26422991 26422991 T A MYO18B Missense_Mutation p.C2351S 0.20 tolerated(0.12) probably_damaging(0.947) TCGA-43-5668-01 22 30805173 30805173 C A SEC14L2 Intron 0.44 TCGA-43-5668-01 22 37581315 37581315 C A C1QTNF6 Missense_Mutation p.G78C 0.41 tolerated(0.19) possibly_damaging(0.744) TCGA-43-5668-01 22 40814489 40814489 C A MKL1 Missense_Mutation p.K651N 0.22 tolerated(0.09) benign(0.136) TCGA-43-5668-01 22 41077845 41077845 G T MCHR1 Silent p.S394S 0.40 TCGA-43-5668-01 2 101584779 101584779 G T NPAS2 Missense_Mutation p.R315L 0.16 deleterious(0) probably_damaging(1) TCGA-43-5668-01 2 105954063 105954063 G T C2orf49 Missense_Mutation p.G7C 0.09 deleterious(0) benign(0.194) TCGA-43-5668-01 2 121050722 121050722 C A RALB Missense_Mutation p.F169L 0.25 deleterious(0.01) possibly_damaging(0.618) TCGA-43-5668-01 2 121050855 121050855 A G RALB 3'UTR 0.28 TCGA-43-5668-01 2 130878177 130878177 C G POTEF 5'UTR 0.21 TCGA-43-5668-01 2 130914946 130914946 C A SMPD4 Missense_Mutation p.E364D 0.25 tolerated(0.27) benign(0.019) TCGA-43-5668-01 2 131128159 131128159 G A PTPN18 Missense_Mutation p.C240Y 0.22 deleterious(0) probably_damaging(1) TCGA-43-5668-01 2 131521569 131521569 C A AMER3 Missense_Mutation p.Q642K 0.16 deleterious(0.03) possibly_damaging(0.831) TCGA-43-5668-01 2 136552210 136552210 C A LCT Splice_Site p.X1704_splice 0.34 TCGA-43-5668-01 2 138759758 138759758 G T HNMT Missense_Mutation p.M141I 0.16 deleterious(0) possibly_damaging(0.832) TCGA-43-5668-01 2 141108547 141108547 G T LRP1B Missense_Mutation p.P3904Q 0.15 possibly_damaging(0.804) TCGA-43-5668-01 2 141459804 141459804 C A LRP1B Nonsense_Mutation p.E2070* 0.27 TCGA-43-5668-01 2 142012191 142012191 T C LRP1B Silent p.Q121Q 0.15 TCGA-43-5668-01 2 144899453 144899453 T A GTDC1 Missense_Mutation p.S173C 0.24 deleterious(0) possibly_damaging(0.738) TCGA-43-5668-01 2 148680584 148680584 G T ACVR2A Missense_Mutation p.A374S 0.22 deleterious(0) possibly_damaging(0.555) TCGA-43-5668-01 2 1544421 1544421 C T TPO Missense_Mutation p.P892S 0.29 tolerated_low_confidence(0.44) benign(0.001) TCGA-43-5668-01 2 160335088 160335088 C T BAZ2B Missense_Mutation p.C48Y 0.26 benign(0.384) TCGA-43-5668-01 2 163027560 163027560 C A FAP Missense_Mutation p.G738C 0.18 deleterious(0) probably_damaging(0.993) TCGA-43-5668-01 2 167289179 167289180 - T SCN7A Frame_Shift_Ins p.N747Kfs*10 0.28 TCGA-43-5668-01 2 1680758 1680758 C A PXDN Silent p.V263V 0.30 TCGA-43-5668-01 2 168101642 168101642 C A XIRP2 Missense_Mutation p.P1247Q 0.31 probably_damaging(0.92) TCGA-43-5668-01 2 169993938 169993938 G A LRP2 Silent p.A4528A 0.24 TCGA-43-5668-01 2 170127511 170127511 A G LRP2 Silent p.S741S 0.26 TCGA-43-5668-01 2 176964863 176964863 C T HOXD12 Missense_Mutation p.R112C 0.24 deleterious(0.03) possibly_damaging(0.902) TCGA-43-5668-01 2 176981724 176981724 C A HOXD10 Missense_Mutation p.P55T 0.21 deleterious(0) probably_damaging(0.998) TCGA-43-5668-01 2 179226430 179226430 C T OSBPL6 Missense_Mutation p.A417V 0.19 tolerated(0.49) possibly_damaging(0.864) TCGA-43-5668-01 2 179588005 179588005 T A TTN Silent p.P7243P 0.18 TCGA-43-5668-01 2 179613192 179613192 A G TTN Intron 0.08 TCGA-43-5668-01 2 182774642 182774642 G T SSFA2 Missense_Mutation p.G477V 0.28 deleterious(0) probably_damaging(0.976) TCGA-43-5668-01 2 183960174 183960174 G C DUSP19 Missense_Mutation p.V148L 0.29 deleterious(0.02) possibly_damaging(0.539) TCGA-43-5668-01 2 197629280 197629280 C T GTF3C3 3'UTR 0.25 TCGA-43-5668-01 2 202136259 202136259 C G CASP8 Nonsense_Mutation p.S168* 0.26 TCGA-43-5668-01 2 207170435 207170435 C T ZDBF2 Nonsense_Mutation p.Q395* 0.17 TCGA-43-5668-01 2 20838383 20838383 T A HS1BP3 Missense_Mutation p.T146S 0.21 tolerated(0.54) benign(0.002) TCGA-43-5668-01 2 214794706 214794706 A G SPAG16 Missense_Mutation p.S413G 0.26 tolerated(0.1) benign(0.372) TCGA-43-5668-01 2 217279579 217279579 A C SMARCAL1 Missense_Mutation p.Q51P 0.23 tolerated_low_confidence(0.06) benign(0.003) TCGA-43-5668-01 2 217279581 217279581 G C SMARCAL1 Missense_Mutation p.G52R 0.20 deleterious_low_confidence(0.04) benign(0.319) TCGA-43-5668-01 2 219846674 219846674 G A FEV Silent p.A144A 0.36 TCGA-43-5668-01 2 219890788 219890788 C T CCDC108 Missense_Mutation p.G769S 0.07 tolerated(0.19) benign(0.26) TCGA-43-5668-01 2 225669970 225669970 C A DOCK10 Missense_Mutation p.R1335M 0.21 deleterious(0) probably_damaging(0.998) TCGA-43-5668-01 2 231775562 231775562 A T GPR55 Missense_Mutation p.L39Q 0.19 deleterious(0.02) possibly_damaging(0.908) TCGA-43-5668-01 2 233199087 233199087 G A DIS3L2 Missense_Mutation p.E723K 0.18 tolerated(0.16) benign(0.018) TCGA-43-5668-01 2 233406092 233406092 G A CHRNG Missense_Mutation p.G120D 0.25 deleterious(0) probably_damaging(0.997) TCGA-43-5668-01 2 233899414 233899414 C A NEU2 Missense_Mutation p.L264M 0.15 deleterious(0) probably_damaging(1) TCGA-43-5668-01 2 26680912 26680912 G T OTOF 3'UTR 0.15 TCGA-43-5668-01 2 33567903 33567903 A C LTBP1 Splice_Site p.X1244_splice 0.21 TCGA-43-5668-01 2 43625176 43625176 C G THADA Missense_Mutation p.L1387F 0.17 deleterious(0) benign(0.314) TCGA-43-5668-01 2 46386887 46386887 G T PRKCE Missense_Mutation p.R688L 0.29 deleterious(0) possibly_damaging(0.854) TCGA-43-5668-01 2 49189950 49189950 G A FSHR Silent p.G670G 0.21 TCGA-43-5668-01 2 55436852 55436852 C G CLHC1 Missense_Mutation p.Q205H 0.21 deleterious(0.03) probably_damaging(0.947) TCGA-43-5668-01 2 71012642 71012642 C G FIGLA Missense_Mutation p.G172R 0.06 tolerated(0.47) benign(0.059) TCGA-43-5668-01 2 71797850 71797850 C A DYSF Missense_Mutation p.S1069R 0.24 tolerated(0.18) benign(0.026) TCGA-43-5668-01 2 71839801 71839801 C A DYSF Missense_Mutation p.P1418T 0.20 deleterious(0) possibly_damaging(0.883) TCGA-43-5668-01 2 73676776 73676776 A T ALMS1 Missense_Mutation p.E1040V 0.34 benign(0.015) TCGA-43-5668-01 2 73800227 73800227 G T ALMS1 Missense_Mutation p.E3740D 0.22 benign(0.275) TCGA-43-5668-01 2 73800228 73800228 G T ALMS1 Nonsense_Mutation p.E3741* 0.22 TCGA-43-5668-01 2 74690021 74690021 C A MOGS Missense_Mutation p.G299C 0.19 deleterious(0.01) probably_damaging(0.994) TCGA-43-5668-01 2 89513141 89513141 T G IGKV1-27 Silent p.R40R 0.26 TCGA-43-5668-01 2 89986357 89986357 G T IGKV2D-29 Missense_Mutation p.R2S 0.19 tolerated(0.06) benign(0.352) TCGA-43-5668-01 2 90139486 90139486 G A IGKV1D-16 Missense_Mutation p.G86D 0.31 deleterious(0.01) possibly_damaging(0.619) TCGA-43-5668-01 2 96968949 96968949 C A SNRNP200 Missense_Mutation p.R110L 0.30 deleterious(0) possibly_damaging(0.862) TCGA-43-5668-01 2 98411438 98411438 G A TMEM131 Missense_Mutation p.P1114L 0.21 deleterious(0) probably_damaging(0.999) TCGA-43-5668-01 3 108156488 108156488 T - MYH15 Frame_Shift_Del p.H1065Pfs*7 0.19 TCGA-43-5668-01 3 108163597 108163597 C T MYH15 Missense_Mutation p.A869T 0.10 tolerated(0.38) benign(0.075) TCGA-43-5668-01 3 111999610 111999610 C - SLC9C1 Frame_Shift_Del p.E37Kfs*9 0.18 TCGA-43-5668-01 3 112357103 112357103 C T CCDC80 Silent p.K550K 0.19 TCGA-43-5668-01 3 113098376 113098376 C T WDR52 Missense_Mutation p.R692K 0.10 tolerated(0.08) possibly_damaging(0.644) TCGA-43-5668-01 3 119445084 119445084 G T MAATS1 Missense_Mutation p.W250L 0.18 deleterious(0) probably_damaging(0.985) TCGA-43-5668-01 3 119886044 119886044 C A GPR156 Silent p.R760R 0.27 TCGA-43-5668-01 3 120976075 120976075 C T STXBP5L Missense_Mutation p.P576L 0.15 tolerated(0.08) benign(0.069) TCGA-43-5668-01 3 122259607 122259607 A T PARP9 Missense_Mutation p.Y528N 0.30 tolerated(0.37) benign(0.001) TCGA-43-5668-01 3 125822661 125822661 C A ALDH1L1 Silent p.R904R 0.24 TCGA-43-5668-01 3 127823761 127823761 C A RUVBL1 Missense_Mutation p.R123L 0.28 deleterious(0.01) benign(0.134) TCGA-43-5668-01 3 129278510 129278510 C A PLXND1 Missense_Mutation p.K1750N 0.10 deleterious(0) probably_damaging(0.928) TCGA-43-5668-01 3 129389433 129389433 A T TMCC1 Nonsense_Mutation p.Y417* 0.20 TCGA-43-5668-01 3 130452389 130452389 T A PIK3R4 Intron 0.42 TCGA-43-5668-01 3 133098958 133098958 G C TMEM108 Missense_Mutation p.G135R 0.13 deleterious_low_confidence(0) benign(0.022) TCGA-43-5668-01 3 133478161 133478161 C A TF Silent p.I397I 0.34 TCGA-43-5668-01 3 13659585 13659585 C T FBLN2 Missense_Mutation p.A580V 0.40 tolerated(0.21) benign(0.02) TCGA-43-5668-01 3 139258355 139258355 C A RBP1 Missense_Mutation p.G69V 0.33 deleterious(0) probably_damaging(1) TCGA-43-5668-01 3 140397179 140397179 C A TRIM42 Missense_Mutation p.N36K 0.29 deleterious(0) probably_damaging(0.928) TCGA-43-5668-01 3 14174420 14174420 G T TMEM43 Missense_Mutation p.G166V 0.62 deleterious(0.01) probably_damaging(0.989) TCGA-43-5668-01 3 142557696 142557696 C A PCOLCE2 Missense_Mutation p.R209L 0.25 deleterious(0) probably_damaging(0.996) TCGA-43-5668-01 3 142681553 142681553 T A PAQR9 Missense_Mutation p.Y209F 0.21 tolerated(0.79) probably_damaging(0.983) TCGA-43-5668-01 3 150690564 150690564 C A CLRN1 5'Flank 0.42 TCGA-43-5668-01 3 150834175 150834175 C A MED12L Silent p.A50A 0.29 TCGA-43-5668-01 3 151164737 151164737 C A IGSF10 Missense_Mutation p.G1011V 0.30 deleterious(0) probably_damaging(0.976) TCGA-43-5668-01 3 159605586 159605586 G C IQCJ-SCHIP1 Missense_Mutation p.K438N 0.11 deleterious(0.04) probably_damaging(0.948) TCGA-43-5668-01 3 168825717 168825717 A G MECOM Silent p.T744T 0.18 TCGA-43-5668-01 3 173525560 173525560 G A NLGN1 Missense_Mutation p.S195N 0.21 deleterious(0) possibly_damaging(0.883) TCGA-43-5668-01 3 178919142 178919142 G A PIK3CA Silent p.L209L 0.35 TCGA-43-5668-01 3 179076790 179076790 G T MFN1 Missense_Mutation p.K137N 0.23 tolerated(0.1) benign(0.271) TCGA-43-5668-01 3 183883207 183883207 C A DVL3 Intron 0.35 TCGA-43-5668-01 3 184076563 184076563 C A CLCN2 Missense_Mutation p.V87F 0.25 deleterious(0) possibly_damaging(0.873) TCGA-43-5668-01 3 18427920 18427920 T G SATB1 Missense_Mutation p.I464L 0.14 tolerated(0.36) benign(0.015) TCGA-43-5668-01 3 184910839 184910839 T A EHHADH Missense_Mutation p.Q449H 0.27 tolerated(0.09) benign(0.005) TCGA-43-5668-01 3 192078223 192078223 C A FGF12 Missense_Mutation p.D102Y 0.43 deleterious(0.01) possibly_damaging(0.821) TCGA-43-5668-01 3 19554491 19554491 C A KCNH8 Missense_Mutation p.N703K 0.36 tolerated(0.89) benign(0) TCGA-43-5668-01 3 30713504 30713504 A G TGFBR2 Missense_Mutation p.K302E 0.46 deleterious(0) probably_damaging(1) TCGA-43-5668-01 3 32995297 32995297 T A CCR4 Missense_Mutation p.V128D 0.44 deleterious(0) possibly_damaging(0.541) TCGA-43-5668-01 3 38537942 38537942 T A EXOG Silent p.A28A 0.31 TCGA-43-5668-01 3 40231921 40231921 C T MYRIP Silent p.P544P 0.08 TCGA-43-5668-01 3 432795 432795 G T CHL1 Missense_Mutation p.G915V 0.54 deleterious(0) probably_damaging(1) TCGA-43-5668-01 3 48677267 48677267 C G CELSR3 Missense_Mutation p.A3251P 0.44 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-43-5668-01 3 49736430 49736430 G A RNF123 Missense_Mutation p.G219D 0.41 deleterious(0) probably_damaging(1) TCGA-43-5668-01 3 52557073 52557073 G C STAB1 Missense_Mutation p.G2315R 0.33 deleterious(0) probably_damaging(0.999) TCGA-43-5668-01 3 53324879 53324879 T A DCP1A Missense_Mutation p.Q464L 0.38 tolerated(0.06) benign(0.073) TCGA-43-5668-01 3 54952882 54952882 G T LRTM1 Missense_Mutation p.D214E 0.42 tolerated(1) benign(0.005) TCGA-43-5668-01 3 74315693 74315693 C A CNTN3 Missense_Mutation p.K975N 0.10 deleterious(0) probably_damaging(0.942) TCGA-43-5668-01 3 75472004 75472004 T C FAM86DP RNA 0.36 TCGA-43-5668-01 3 97869025 97869025 C A OR5H14 Missense_Mutation p.Q266K 0.43 tolerated(0.45) benign(0.02) TCGA-43-5668-01 4 100348953 100348953 C A ADH7 Missense_Mutation p.G201C 0.35 deleterious(0) probably_damaging(0.999) TCGA-43-5668-01 4 101439008 101439008 C A EMCN Missense_Mutation p.G22C 0.20 deleterious(0.03) probably_damaging(0.995) TCGA-43-5668-01 4 102751316 102751316 A C BANK1 Missense_Mutation p.Q141P 0.09 deleterious(0) probably_damaging(0.994) TCGA-43-5668-01 4 115997237 115997237 C A NDST4 Missense_Mutation p.R319M 0.31 deleterious(0) probably_damaging(0.993) TCGA-43-5668-01 4 123175404 123175404 C A KIAA1109 Missense_Mutation p.P1993T 0.16 possibly_damaging(0.791) TCGA-43-5668-01 4 129809879 129809879 C T SCLT1 Silent p.R653R 0.05 TCGA-43-5668-01 4 134076104 134076104 C A PCDH10 Missense_Mutation p.S908Y 0.39 deleterious(0.02) probably_damaging(0.996) TCGA-43-5668-01 4 146436166 146436166 G T SMAD1 Splice_Site p.X134_splice 0.12 TCGA-43-5668-01 4 151773088 151773088 C T LRBA Silent p.L1258L 0.17 TCGA-43-5668-01 4 155156647 155156647 G A DCHS2 Nonsense_Mutation p.Q2598* 0.16 TCGA-43-5668-01 4 169227871 169227871 C A DDX60 Missense_Mutation p.D89Y 0.27 deleterious(0) probably_damaging(0.986) TCGA-43-5668-01 4 186510909 186510909 C T SORBS2 Silent p.R1155R 0.28 TCGA-43-5668-01 4 189020189 189020189 C A TRIML2 Missense_Mutation p.K157N 0.26 deleterious(0.02) benign(0.156) TCGA-43-5668-01 4 190883076 190883076 G T FRG1 Silent p.T243T 0.20 TCGA-43-5668-01 4 20530638 20530638 G T SLIT2 Missense_Mutation p.C510F 0.09 deleterious(0) probably_damaging(1) TCGA-43-5668-01 4 22438203 22438203 T A GPR125 Missense_Mutation p.S383C 0.15 deleterious(0) possibly_damaging(0.8) TCGA-43-5668-01 4 22748957 22748957 A G GBA3 Missense_Mutation p.K109E 0.12 tolerated(0.34) benign(0) TCGA-43-5668-01 4 37848563 37848563 G A PGM2 Missense_Mutation p.R340K 0.29 tolerated(1) benign(0.001) TCGA-43-5668-01 4 42403402 42403402 C A SHISA3 Missense_Mutation p.F217L 0.22 tolerated_low_confidence(0.26) benign(0.004) TCGA-43-5668-01 4 42895622 42895622 G T GRXCR1 Silent p.V113V 0.09 TCGA-43-5668-01 4 46053631 46053631 G T GABRG1 Missense_Mutation p.T314K 0.18 deleterious(0) probably_damaging(0.998) TCGA-43-5668-01 4 46067412 46067412 A C GABRG1 Missense_Mutation p.W171G 0.11 tolerated(0.06) benign(0.089) TCGA-43-5668-01 4 47527573 47527573 G T ATP10D Splice_Site p.X231_splice 0.19 TCGA-43-5668-01 4 47527574 47527574 G T ATP10D Missense_Mutation p.D231Y 0.22 tolerated(0.06) possibly_damaging(0.797) TCGA-43-5668-01 4 47645067 47645067 G - CORIN Intron 0.33 TCGA-43-5668-01 4 52883288 52883288 G A LRRC66 Silent p.P164P 0.28 TCGA-43-5668-01 4 54231648 54231648 A G SCFD2 Missense_Mutation p.F154S 0.11 deleterious(0) benign(0.019) TCGA-43-5668-01 4 54343060 54343060 C G LNX1 Silent p.S584S 0.20 TCGA-43-5668-01 4 57261419 57261419 C T PPAT 3'UTR 0.24 TCGA-43-5668-01 4 57325748 57325748 C G PAICS 3'UTR 0.35 TCGA-43-5668-01 4 57522051 57522051 T A HOPX Missense_Mutation p.E57V 0.28 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-43-5668-01 4 57522052 57522052 C G HOPX Missense_Mutation p.E57Q 0.28 deleterious_low_confidence(0) possibly_damaging(0.742) TCGA-43-5668-01 4 66467468 66467468 C A EPHA5 Silent p.V267V 0.29 TCGA-43-5668-01 4 6826361 6826361 G A KIAA0232 Missense_Mutation p.V61I 0.13 tolerated(0.18) benign(0.034) TCGA-43-5668-01 4 68928893 68928893 C A TMPRSS11F Intron 0.13 TCGA-43-5668-01 4 69343137 69343137 C A TMPRSS11E Missense_Mutation p.P253H 0.21 deleterious(0.03) benign(0.11) TCGA-43-5668-01 4 70513211 70513211 G A UGT2A1 Missense_Mutation p.T51I 0.19 deleterious(0.02) probably_damaging(1) TCGA-43-5668-01 4 70599210 70599210 C G SULT1B1 Missense_Mutation p.W173S 0.32 deleterious(0) probably_damaging(0.999) TCGA-43-5668-01 4 70723226 70723226 G T SULT1E1 Missense_Mutation p.P46H 0.14 deleterious(0) probably_damaging(0.999) TCGA-43-5668-01 4 71201257 71201257 G A CABS1 Silent p.K167K 0.16 TCGA-43-5668-01 4 71275312 71275312 A T PROL1 Silent p.P89P 0.13 TCGA-43-5668-01 4 71510502 71510502 C A ENAM Missense_Mutation p.P1120Q 0.16 deleterious(0) probably_damaging(0.913) TCGA-43-5668-01 4 73003832 73003832 C T NPFFR2 Missense_Mutation p.T237M 0.17 deleterious(0) probably_damaging(0.998) TCGA-43-5668-01 4 7436386 7436386 G T PSAPL1 Missense_Mutation p.A74D 0.25 deleterious(0) possibly_damaging(0.883) TCGA-43-5668-01 4 80246828 80246828 C A NAA11 Silent p.P68P 0.09 TCGA-43-5668-01 4 8368789 8368789 C A ACOX3 Missense_Mutation p.G668C 0.15 deleterious(0.04) possibly_damaging(0.781) TCGA-43-5668-01 4 83748545 83748545 C A SEC31A Missense_Mutation p.A1090S 0.28 deleterious(0.03) benign(0.437) TCGA-43-5668-01 4 94377048 94377048 G T GRID2 Missense_Mutation p.R594L 0.28 tolerated(0.1) possibly_damaging(0.627) TCGA-43-5668-01 5 102895085 102895085 T A NUDT12 Missense_Mutation p.L97F 0.42 tolerated(0.16) probably_damaging(0.929) TCGA-43-5668-01 5 10411539 10411539 G A MARCH6 Missense_Mutation p.A596T 0.40 tolerated(0.46) benign(0.025) TCGA-43-5668-01 5 132034944 132034944 T C KIF3A Missense_Mutation p.E657G 0.42 tolerated(0.32) benign(0) TCGA-43-5668-01 5 134724704 134724704 C A H2AFY Missense_Mutation p.R27L 0.45 deleterious(0) probably_damaging(1) TCGA-43-5668-01 5 138716052 138716052 G T SLC23A1 Missense_Mutation p.S168R 0.30 deleterious(0) probably_damaging(0.979) TCGA-43-5668-01 5 1403118 1403118 C A SLC6A3 Missense_Mutation p.W562C 0.20 deleterious(0.02) probably_damaging(0.981) TCGA-43-5668-01 5 140554588 140554588 G T PCDHB7 Silent p.S724S 0.41 TCGA-43-5668-01 5 140604159 140604159 C A PCDHB14 Nonsense_Mutation p.S361* 0.29 TCGA-43-5668-01 5 140616352 140616352 C A PCDHB18 RNA 0.34 TCGA-43-5668-01 5 140730146 140730146 G T PCDHGB1 Missense_Mutation p.A107S 0.37 deleterious(0.05) benign(0.398) TCGA-43-5668-01 5 140811264 140811264 G T PCDHGA12 Missense_Mutation p.G313V 0.29 tolerated_low_confidence(0.16) benign(0.072) TCGA-43-5668-01 5 141019431 141019431 G T FCHSD1 3'UTR 0.32 TCGA-43-5668-01 5 1422081 1422081 C G SLC6A3 Silent p.G234G 0.50 TCGA-43-5668-01 5 148206670 148206670 C A ADRB2 Silent p.A92A 0.37 TCGA-43-5668-01 5 150722495 150722495 C G SLC36A2 Missense_Mutation p.E132Q 0.06 deleterious(0.02) possibly_damaging(0.517) TCGA-43-5668-01 5 151784185 151784185 G T NMUR2 Missense_Mutation p.L164I 0.29 tolerated(0.08) probably_damaging(0.98) TCGA-43-5668-01 5 154394676 154394676 G T KIF4B Missense_Mutation p.R419S 0.27 deleterious(0.02) benign(0.051) TCGA-43-5668-01 5 154395465 154395465 G T KIF4B Missense_Mutation p.R682S 0.28 deleterious(0) probably_damaging(0.99) TCGA-43-5668-01 5 159661868 159661868 C T FABP6 Silent p.F144F 0.32 TCGA-43-5668-01 5 16769217 16769217 G A MYO10 Silent p.I342I 0.20 TCGA-43-5668-01 5 168093550 168093550 C T SLIT3 Missense_Mutation p.R1494Q 0.57 deleterious(0) possibly_damaging(0.564) TCGA-43-5668-01 5 168135110 168135110 G C SLIT3 Intron 0.24 TCGA-43-5668-01 5 168671733 168671733 T A SLIT3 Missense_Mutation p.Q106L 0.31 tolerated(0.15) possibly_damaging(0.596) TCGA-43-5668-01 5 169023621 169023621 G T SPDL1 Missense_Mutation p.Q316H 0.31 deleterious(0) possibly_damaging(0.893) TCGA-43-5668-01 5 179192629 179192629 G C MAML1 Missense_Mutation p.E206D 0.39 tolerated(1) benign(0.001) TCGA-43-5668-01 5 24537582 24537582 C T CDH10 Missense_Mutation p.E145K 0.34 deleterious(0) probably_damaging(0.933) TCGA-43-5668-01 5 31466304 31466304 C A DROSHA Missense_Mutation p.K817N 0.35 deleterious(0.02) possibly_damaging(0.811) TCGA-43-5668-01 5 35910530 35910530 G T CAPSL Silent p.R85R 0.10 TCGA-43-5668-01 5 37348656 37348656 C A NUP155 Missense_Mutation p.A316S 0.13 tolerated(0.06) benign(0.103) TCGA-43-5668-01 5 41181519 41181519 C A C6 Missense_Mutation p.S290I 0.20 tolerated(0.07) benign(0.235) TCGA-43-5668-01 5 42801147 42801147 T C SEPP1 Missense_Mutation p.K274R 0.19 tolerated_low_confidence(0.74) benign(0.009) TCGA-43-5668-01 5 50683438 50683438 C A ISL1 Missense_Mutation p.S111R 0.25 tolerated(0.11) possibly_damaging(0.598) TCGA-43-5668-01 5 52206169 52206169 G C ITGA1 Missense_Mutation p.A593P 0.57 deleterious(0) probably_damaging(0.984) TCGA-43-5668-01 5 52377486 52377486 T A ITGA2 Missense_Mutation p.V1035E 0.15 tolerated(0.4) benign(0.268) TCGA-43-5668-01 5 66479329 66479329 G A CD180 Nonsense_Mutation p.Q448* 0.45 TCGA-43-5668-01 5 68470119 68470119 A C CCNB1 Missense_Mutation p.E196D 0.41 tolerated(0.14) benign(0.024) TCGA-43-5668-01 5 78373405 78373410 CCAGAG - BHMT2 In_Frame_Del p.P46_E47del 0.26 TCGA-43-5668-01 6 100838339 100838339 G T SIM1 Silent p.G733G 0.13 TCGA-43-5668-01 6 102074447 102074447 C A GRIK2 Missense_Mutation p.A159D 0.18 deleterious(0) probably_damaging(1) TCGA-43-5668-01 6 102074448 102074448 C A GRIK2 Silent p.A159A 0.20 TCGA-43-5668-01 6 106555270 106555270 A C PRDM1 Missense_Mutation p.D796A 0.18 deleterious(0.05) possibly_damaging(0.484) TCGA-43-5668-01 6 108499422 108499422 T C NR2E1 Missense_Mutation p.S207P 0.26 tolerated(0.19) benign(0.213) TCGA-43-5668-01 6 108986089 108986089 G T FOXO3 3'UTR 0.19 TCGA-43-5668-01 6 109476454 109476454 G A CEP57L1 Missense_Mutation p.E201K 0.22 deleterious(0) probably_damaging(0.974) TCGA-43-5668-01 6 109787067 109787067 T A ZBTB24 Missense_Mutation p.Q694L 0.24 tolerated_low_confidence(0.16) benign(0.069) TCGA-43-5668-01 6 112035579 112035579 T A FYN Missense_Mutation p.K105N 0.10 deleterious(0) probably_damaging(0.999) TCGA-43-5668-01 6 112671182 112671182 G T RFPL4B Missense_Mutation p.R91L 0.19 tolerated(1) benign(0.001) TCGA-43-5668-01 6 132179888 132179888 G A ENPP1 Splice_Site p.X265_splice 0.29 TCGA-43-5668-01 6 132891790 132891790 C A TAAR6 Nonsense_Mutation p.C110* 0.17 TCGA-43-5668-01 6 133072503 133072503 G T VNN2 Silent p.I327I 0.19 TCGA-43-5668-01 6 135518392 135518392 A G MYB Missense_Mutation p.I499M 0.17 tolerated(0.14) benign(0.121) TCGA-43-5668-01 6 144835120 144835120 C T UTRN Silent p.L1674L 0.31 TCGA-43-5668-01 6 15524752 15524752 C G DTNBP1 Intron 0.14 TCGA-43-5668-01 6 161007565 161007565 T C LPA Missense_Mutation p.T1349A 0.26 tolerated(0.39) probably_damaging(0.976) TCGA-43-5668-01 6 163985702 163985702 G T QKI Intron 0.12 TCGA-43-5668-01 6 21065322 21065322 C - CDKAL1 Frame_Shift_Del p.P367Lfs*12 0.25 TCGA-43-5668-01 6 26200040 26200040 A G HIST1H2BF Missense_Mutation p.N85S 0.15 deleterious_low_confidence(0.03) benign(0.305) TCGA-43-5668-01 6 26468327 26468327 G T BTN2A1 Silent p.R378R 0.26 TCGA-43-5668-01 6 28227293 28227293 T C NKAPL Silent p.R48R 0.23 TCGA-43-5668-01 6 28331591 28331591 G T ZKSCAN3 Silent p.L252L 0.07 TCGA-43-5668-01 6 29365234 29365234 C A OR12D2 Missense_Mutation p.P253H 0.10 deleterious(0) probably_damaging(0.948) TCGA-43-5668-01 6 30122178 30122178 C A TRIM10 Missense_Mutation p.W338C 0.17 tolerated(0.08) probably_damaging(1) TCGA-43-5668-01 6 30653372 30653372 C A PPP1R18 Nonsense_Mutation p.E142* 0.14 TCGA-43-5668-01 6 30865331 30865331 G C DDR1 Missense_Mutation p.G731R 0.33 tolerated(0.3) benign(0.051) TCGA-43-5668-01 6 30888132 30888132 G T VARS2 Missense_Mutation p.R469L 0.31 deleterious(0) probably_damaging(1) TCGA-43-5668-01 6 31110428 31110428 C A CCHCR1 Missense_Mutation p.V853F 0.10 deleterious_low_confidence(0.01) benign(0.312) TCGA-43-5668-01 6 31548597 31548597 G C LTB Silent p.G208G 0.31 TCGA-43-5668-01 6 32134487 32134487 C T EGFL8 Silent p.Y78Y 0.29 TCGA-43-5668-01 6 34386164 34386164 T A RPS10 Silent p.S146S 0.14 TCGA-43-5668-01 6 34826575 34826575 A G UHRF1BP1 Silent p.A814A 0.15 TCGA-43-5668-01 6 35987385 35987385 T G SLC26A8 Missense_Mutation p.T34P 0.32 tolerated(0.15) benign(0.126) TCGA-43-5668-01 6 39880094 39880094 C A MOCS1 Missense_Mutation p.G299C 0.22 deleterious(0) probably_damaging(1) TCGA-43-5668-01 6 41250461 41250461 C T TREM1 Silent p.E26E 0.27 TCGA-43-5668-01 6 41704721 41704721 C A PGC Nonsense_Mutation p.G346* 0.26 TCGA-43-5668-01 6 44254184 44254184 G T TCTE1 Silent p.T121T 0.23 TCGA-43-5668-01 6 45917079 45917079 G A CLIC5 Silent p.H230H 0.23 TCGA-43-5668-01 6 46801051 46801051 C A MEP1A Nonsense_Mutation p.S462* 0.36 TCGA-43-5668-01 6 50011361 50011361 G C DEFB112 Missense_Mutation p.T90R 0.24 tolerated(0.45) possibly_damaging(0.657) TCGA-43-5668-01 6 54025560 54025560 G C MLIP Missense_Mutation p.R286T 0.11 tolerated(0.28) benign(0.157) TCGA-43-5668-01 6 55443894 55443894 G A HMGCLL1 5'UTR 0.40 TCGA-43-5668-01 6 62442636 62442636 C A KHDRBS2 Missense_Mutation p.D282Y 0.13 deleterious(0) possibly_damaging(0.621) TCGA-43-5668-01 6 70859619 70859619 G A COL19A1 Silent p.E639E 0.16 TCGA-43-5668-01 6 74492421 74492421 G T CD109 Missense_Mutation p.S683I 0.19 tolerated(0.12) benign(0.005) TCGA-43-5668-01 6 7580280 7580280 A T DSP Missense_Mutation p.Q1286L 0.24 benign(0.126) TCGA-43-5668-01 6 75892940 75892940 C G COL12A1 Missense_Mutation p.A573P 0.22 probably_damaging(0.999) TCGA-43-5668-01 6 84234168 84234168 C A PRSS35 Nonsense_Mutation p.Y336* 0.17 TCGA-43-5668-01 6 84627783 84627783 A T CYB5R4 Missense_Mutation p.S169C 0.12 tolerated(0.07) possibly_damaging(0.886) TCGA-43-5668-01 6 84772676 84772676 G T MRAP2 Silent p.L64L 0.20 TCGA-43-5668-01 6 85446454 85446454 G T TBX18 Silent p.T591T 0.10 TCGA-43-5668-01 6 85457707 85457707 C A TBX18 Silent p.G290G 0.18 TCGA-43-5668-01 6 87795487 87795487 T A CGA Missense_Mutation p.Y113F 0.28 tolerated(0.14) benign(0.002) TCGA-43-5668-01 6 97063549 97063549 C T FHL5 Silent p.C252C 0.33 TCGA-43-5668-01 6 97247021 97247021 T A GPR63 Missense_Mutation p.K196M 0.20 deleterious(0) probably_damaging(0.999) TCGA-43-5668-01 6 97610000 97610000 C T MMS22L Missense_Mutation p.R1088H 0.12 tolerated(0.11) probably_damaging(0.996) TCGA-43-5668-01 7 100345809 100345809 T C ZAN Missense_Mutation p.V358A 0.14 probably_damaging(0.996) TCGA-43-5668-01 7 100679498 100679498 A C MUC17 Missense_Mutation p.K1601Q 0.17 unknown(0) TCGA-43-5668-01 7 102944925 102944925 G T PMPCB Missense_Mutation p.A242S 0.18 tolerated(0.08) benign(0.165) TCGA-43-5668-01 7 103014876 103014876 G C SLC26A5 Silent p.P735P 0.16 TCGA-43-5668-01 7 112415234 112415234 C A TMEM168 Missense_Mutation p.C423F 0.16 deleterious(0.02) benign(0.109) TCGA-43-5668-01 7 113517826 113517826 C A PPP1R3A Missense_Mutation p.W1107C 0.10 deleterious(0.04) probably_damaging(0.922) TCGA-43-5668-01 7 120764491 120764491 G T CPED1 Missense_Mutation p.S342I 0.28 tolerated(0.05) possibly_damaging(0.759) TCGA-43-5668-01 7 120935621 120935621 C G CPED1 Missense_Mutation p.S999W 0.20 deleterious(0) probably_damaging(0.999) TCGA-43-5668-01 7 121731879 121731879 A G AASS Missense_Mutation p.Y632H 0.13 deleterious(0) probably_damaging(0.925) TCGA-43-5668-01 7 126173172 126173172 T C GRM8 Missense_Mutation p.Y755C 0.30 deleterious(0.01) probably_damaging(1) TCGA-43-5668-01 7 126882901 126882901 C A GRM8 Missense_Mutation p.V120L 0.20 deleterious(0.02) possibly_damaging(0.674) TCGA-43-5668-01 7 137080431 137080431 T G DGKI Silent p.A998A 0.10 TCGA-43-5668-01 7 141491034 141491034 G T TAS2R5 Silent p.V291V 0.15 TCGA-43-5668-01 7 142197581 142197581 G T TRBV11-2 RNA 0.09 TCGA-43-5668-01 7 142231742 142231742 C A TRBV10-1 Nonsense_Mutation p.G59* 0.20 TCGA-43-5668-01 7 142630466 142630466 G T TRPV5 Missense_Mutation p.Q31K 0.10 tolerated(0.1) benign(0.005) TCGA-43-5668-01 7 142919978 142919978 C G TAS2R40 Missense_Mutation p.N269K 0.10 deleterious(0) possibly_damaging(0.589) TCGA-43-5668-01 7 142983078 142983078 C A TMEM139 Missense_Mutation p.L10M 0.26 deleterious(0.01) possibly_damaging(0.82) TCGA-43-5668-01 7 143701614 143701614 C A OR6B1 Missense_Mutation p.N175K 0.21 deleterious(0) probably_damaging(0.938) TCGA-43-5668-01 7 147914555 147914555 C T CNTNAP2 Silent p.C1062C 0.20 TCGA-43-5668-01 7 1489875 1489875 C A MICALL2 Splice_Site p.X64_splice 0.27 TCGA-43-5668-01 7 149419958 149419958 C T KRBA1 Missense_Mutation p.T228I 0.11 tolerated(0.09) benign(0.242) TCGA-43-5668-01 7 150417670 150417670 C G GIMAP1 Missense_Mutation p.T193S 0.22 tolerated(0.16) benign(0.223) TCGA-43-5668-01 7 150554679 150554679 T A AOC1 Missense_Mutation p.V374D 0.09 tolerated(0.08) probably_damaging(0.982) TCGA-43-5668-01 7 150645948 150645948 C T KCNH2 Missense_Mutation p.R863Q 0.13 deleterious(0.02) probably_damaging(0.957) TCGA-43-5668-01 7 150745868 150745868 C A ASIC3 5'Flank 0.20 TCGA-43-5668-01 7 150746350 150746350 G T ASIC3 Silent p.L126L 0.25 TCGA-43-5668-01 7 19184786 19184786 C A FERD3L Missense_Mutation p.C67F 0.19 tolerated(0.25) benign(0.009) TCGA-43-5668-01 7 30831179 30831179 C T FAM188B Silent p.P354P 0.25 TCGA-43-5668-01 7 33644897 33644897 A T BBS9 3'UTR 0.39 TCGA-43-5668-01 7 36447361 36447361 A G ANLN Missense_Mutation p.K298E 0.34 tolerated(0.07) benign(0.119) TCGA-43-5668-01 7 38389443 38389443 C A TRGV5 5'UTR 0.16 TCGA-43-5668-01 7 40118369 40118369 C G CDK13 Missense_Mutation p.P983R 0.12 deleterious(0) probably_damaging(0.985) TCGA-43-5668-01 7 42005485 42005485 C T GLI3 Silent p.S1062S 0.12 TCGA-43-5668-01 7 48550699 48550699 T C ABCA13 Missense_Mutation p.V4515A 0.11 possibly_damaging(0.872) TCGA-43-5668-01 7 4947082 4947082 G A MMD2 Missense_Mutation p.A253V 0.28 deleterious(0) probably_damaging(0.992) TCGA-43-5668-01 7 70255478 70255478 G A AUTS2 Silent p.R1092R 0.17 TCGA-43-5668-01 7 76828528 76828528 G T FGL2 Missense_Mutation p.P195T 0.18 tolerated(0.13) possibly_damaging(0.461) TCGA-43-5668-01 7 8110628 8110629 - CC GLCCI1 Frame_Shift_Ins p.Q349Pfs*79 0.30 TCGA-43-5668-01 7 86522305 86522305 C A KIAA1324L Missense_Mutation p.G933C 0.20 tolerated(0.17) probably_damaging(0.99) TCGA-43-5668-01 7 87049318 87049318 C A ABCB4 Missense_Mutation p.R797I 0.19 deleterious(0.04) benign(0.178) TCGA-43-5668-01 7 87170713 87170713 A G ABCB1 Missense_Mutation p.L760P 0.16 deleterious(0) probably_damaging(0.975) TCGA-43-5668-01 7 87174183 87174183 C A ABCB1 Nonsense_Mutation p.G674* 0.16 TCGA-43-5668-01 7 94059648 94059648 C T COL1A2 Silent p.D1348D 0.15 TCGA-43-5668-01 7 95125305 95125305 C A ASB4 Missense_Mutation p.H141Q 0.22 tolerated(0.14) benign(0.033) TCGA-43-5668-01 7 95751058 95751058 C A SLC25A13 Splice_Site p.X585_splice 0.11 TCGA-43-5668-01 8 103306322 103306322 T A UBR5 Missense_Mutation p.T1404S 0.12 deleterious(0) probably_damaging(0.952) TCGA-43-5668-01 8 104987671 104987671 C A RIMS2 Missense_Mutation p.P955H 0.26 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-43-5668-01 8 105405189 105405189 A C DPYS Silent p.A422A 0.17 TCGA-43-5668-01 8 108913145 108913145 C G RSPO2 3'UTR 0.35 TCGA-43-5668-01 8 113301596 113301596 G A CSMD3 Missense_Mutation p.S3049L 0.27 deleterious(0) benign(0.356) TCGA-43-5668-01 8 113697736 113697736 G T CSMD3 Missense_Mutation p.A794D 0.16 tolerated(0.48) probably_damaging(1) TCGA-43-5668-01 8 11421500 11421500 C G BLK Silent p.G467G 0.37 TCGA-43-5668-01 8 118812099 118812099 A G EXT1 Missense_Mutation p.F698S 0.32 deleterious(0.03) probably_damaging(0.979) TCGA-43-5668-01 8 133153497 133153497 C A KCNQ3 Silent p.L448L 0.23 TCGA-43-5668-01 8 133645013 133645013 C T LRRC6 Missense_Mutation p.R209H 0.11 tolerated(0.12) benign(0.014) TCGA-43-5668-01 8 133961149 133961149 C A TG Missense_Mutation p.Q1788K 0.23 tolerated(0.26) benign(0.049) TCGA-43-5668-01 8 139151241 139151241 T A FAM135B Missense_Mutation p.S1297C 0.15 deleterious(0) probably_damaging(1) TCGA-43-5668-01 8 144809011 144809011 C A FAM83H Missense_Mutation p.A874S 0.24 tolerated(0.18) benign(0.003) TCGA-43-5668-01 8 145697789 145697789 G T KIFC2 Missense_Mutation p.Q551H 0.42 tolerated(0.25) probably_damaging(0.997) TCGA-43-5668-01 8 17838119 17838119 G A PCM1 Missense_Mutation p.M1321I 0.32 tolerated(0.51) benign(0.003) TCGA-43-5668-01 8 2975995 2975995 A T CSMD1 Missense_Mutation p.L2119Q 0.40 probably_damaging(1) TCGA-43-5668-01 8 39792687 39792687 G T IDO2 5'UTR 0.26 TCGA-43-5668-01 8 48798650 48798650 C - PRKDC Frame_Shift_Del p.G1543Afs*29 0.24 TCGA-43-5668-01 8 52232420 52232420 C A PXDNL 3'UTR 0.27 TCGA-43-5668-01 8 52258501 52258501 C A PXDNL Missense_Mutation p.R1303M 0.09 deleterious(0) possibly_damaging(0.738) TCGA-43-5668-01 8 52320778 52320778 C T PXDNL Missense_Mutation p.D1136N 0.21 deleterious(0) probably_damaging(0.999) TCGA-43-5668-01 8 52321169 52321169 C A PXDNL Silent p.V1005V 0.50 TCGA-43-5668-01 8 52359606 52359606 C A PXDNL Missense_Mutation p.G495W 0.13 deleterious(0) probably_damaging(1) TCGA-43-5668-01 8 68334855 68334855 G T CPA6 Missense_Mutation p.R400S 0.24 deleterious(0) probably_damaging(1) TCGA-43-5668-01 8 69030786 69030786 G T PREX2 Missense_Mutation p.D1110Y 0.27 deleterious(0) probably_damaging(0.915) TCGA-43-5668-01 8 69104759 69104759 C G PREX2 Missense_Mutation p.R1535G 0.29 deleterious(0) benign(0.19) TCGA-43-5668-01 8 77761870 77761871 - A ZFHX4 Frame_Shift_Ins p.N1257Kfs*31 0.35 TCGA-43-5668-01 8 77763598 77763598 C A ZFHX4 Missense_Mutation p.H1481N 0.29 benign(0.216) TCGA-43-5668-01 8 77766706 77766706 C T ZFHX4 Missense_Mutation p.L2517F 0.22 probably_damaging(0.994) TCGA-43-5668-01 8 87226774 87226774 C G SLC7A13 Silent p.L427L 0.22 TCGA-43-5668-01 8 97156891 97156891 G T GDF6 Missense_Mutation p.T423N 0.24 deleterious(0) probably_damaging(0.973) TCGA-43-5668-01 8 97316352 97316352 C T PTDSS1 Silent p.D279D 0.17 TCGA-43-5668-01 9 101065634 101065634 C A GABBR2 Missense_Mutation p.K767N 0.33 tolerated(0.33) benign(0.002) TCGA-43-5668-01 9 113251936 113251936 C G SVEP1 Missense_Mutation p.V642L 0.14 probably_damaging(0.999) TCGA-43-5668-01 9 113547873 113547873 C A MUSK Missense_Mutation p.N551K 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-43-5668-01 9 117020846 117020846 C A COL27A1 Missense_Mutation p.P1056Q 0.26 unknown(0) TCGA-43-5668-01 9 125551984 125551984 C A OR5C1 Missense_Mutation p.T258K 0.18 deleterious(0) probably_damaging(0.999) TCGA-43-5668-01 9 128510846 128510846 G T PBX3 Missense_Mutation p.C73F 0.16 deleterious(0.01) possibly_damaging(0.775) TCGA-43-5668-01 9 130197395 130197395 G T ZNF79 Silent p.T44T 0.26 TCGA-43-5668-01 9 133962940 133962940 G T LAMC3 Silent p.T1436T 0.14 TCGA-43-5668-01 9 134015981 134015981 C T NUP214 Missense_Mutation p.S393L 0.05 unknown(0) TCGA-43-5668-01 9 135447886 135447886 A G C9orf171 Missense_Mutation p.T318A 0.38 tolerated(0.08) possibly_damaging(0.896) TCGA-43-5668-01 9 139272465 139272465 C A SNAPC4 Missense_Mutation p.G1272C 0.30 tolerated(0.08) possibly_damaging(0.72) TCGA-43-5668-01 9 139301958 139301958 C A SDCCAG3 Missense_Mutation p.G153V 0.15 tolerated(1) benign(0.001) TCGA-43-5668-01 9 139649901 139649901 C T LCN8 Missense_Mutation p.M98I 0.24 tolerated(0.4) benign(0.028) TCGA-43-5668-01 9 140611315 140611315 A T EHMT1 Missense_Mutation p.H108L 0.16 deleterious_low_confidence(0.03) benign(0.354) TCGA-43-5668-01 9 14759788 14759788 C A FREM1 Silent p.S1772S 0.30 TCGA-43-5668-01 9 16437519 16437519 C A BNC2 Missense_Mutation p.A225S 0.35 tolerated(0.07) possibly_damaging(0.526) TCGA-43-5668-01 9 32630258 32630258 C A TAF1L Nonsense_Mutation p.E1774* 0.25 TCGA-43-5668-01 9 34382827 34382827 G T C9orf24 Nonsense_Mutation p.Y107* 0.39 TCGA-43-5668-01 9 43624918 43624918 T A SPATA31A6 Missense_Mutation p.I1257L 0.11 tolerated(0.24) benign(0.007) TCGA-43-5668-01 9 78804654 78804654 G T PCSK5 Missense_Mutation p.C873F 0.35 deleterious(0) probably_damaging(0.997) TCGA-43-5668-01 9 80537167 80537167 C T GNAQ Silent p.K77K 0.31 TCGA-43-5668-01 9 90503468 90503468 C A SPATA31E1 Missense_Mutation p.P1356T 0.15 tolerated(0.39) benign(0.382) TCGA-43-5668-01 9 91262379 91262379 C A RP13-60M5.2 RNA 0.23 TCGA-43-5668-01 X 100611048 100611048 G T BTK Silent p.R520R 0.53 TCGA-43-5668-01 X 100667656 100667656 G T HNRNPH2 Missense_Mutation p.G227V 0.42 tolerated(0.21) possibly_damaging(0.873) TCGA-43-5668-01 X 101097735 101097735 C A NXF5 Missense_Mutation p.M10I 0.55 tolerated(0.39) benign(0.001) TCGA-43-5668-01 X 107380351 107380351 C T ATG4A Silent p.S166S 0.38 TCGA-43-5668-01 X 110491218 110491218 T A CAPN6 Missense_Mutation p.E496V 0.22 deleterious(0) possibly_damaging(0.788) TCGA-43-5668-01 X 110494147 110494147 G T CAPN6 Missense_Mutation p.Q386K 0.55 deleterious(0.01) possibly_damaging(0.621) TCGA-43-5668-01 X 110653371 110653371 C T DCX Missense_Mutation p.D167N 0.62 deleterious(0.04) possibly_damaging(0.675) TCGA-43-5668-01 X 125685530 125685530 C T DCAF12L1 Silent p.R354R 0.40 TCGA-43-5668-01 X 131212472 131212472 G T FRMD7 Missense_Mutation p.P525T 0.38 deleterious(0.01) benign(0.184) TCGA-43-5668-01 X 138633269 138633269 C - F9 Frame_Shift_Del p.R191Vfs*12 0.39 TCGA-43-5668-01 X 148798397 148798397 G A MAGEA11 Silent p.L417L 0.62 TCGA-43-5668-01 X 151093042 151093042 C - MAGEA4 Frame_Shift_Del p.P303Hfs*9 0.37 TCGA-43-5668-01 X 151303813 151303813 G T MAGEA10 Missense_Mutation p.P94T 0.42 tolerated(0.33) benign(0.3) TCGA-43-5668-01 X 153053588 153053588 T A IDH3G Missense_Mutation p.N117Y 0.56 tolerated(0.44) probably_damaging(0.986) TCGA-43-5668-01 X 1584343 1584343 C A P2RY8 3'UTR 0.17 TCGA-43-5668-01 X 23018431 23018431 A G DDX53 Missense_Mutation p.N86S 0.26 deleterious(0.05) benign(0.004) TCGA-43-5668-01 X 31462722 31462722 G T DMD Missense_Mutation p.P2987H 0.63 probably_damaging(0.95) TCGA-43-5668-01 X 32408279 32408279 G C DMD Missense_Mutation p.T1418R 0.69 probably_damaging(0.923) TCGA-43-5668-01 X 41010252 41010252 G C USP9X Missense_Mutation p.A569P 0.42 deleterious(0) probably_damaging(0.995) TCGA-43-5668-01 X 50119073 50119073 C G DGKK RNA 0.54 TCGA-43-5668-01 X 53674517 53674517 A G HUWE1 Missense_Mutation p.C49R 0.43 probably_damaging(0.991) TCGA-43-5668-01 X 54957141 54957141 C A TRO Missense_Mutation p.D1328E 0.53 deleterious_low_confidence(0.02) benign(0.417) TCGA-43-5668-01 X 63412889 63412889 C A AMER1 Missense_Mutation p.S93I 0.40 deleterious(0.02) probably_damaging(1) TCGA-43-5668-01 X 70349258 70349258 C G MED12 Missense_Mutation p.L1224V 0.33 probably_damaging(0.995) TCGA-43-5668-01 X 71825207 71825207 C A PHKA1 Missense_Mutation p.G910V 0.48 tolerated(0.15) benign(0.009) TCGA-43-5668-01 X 73065916 73065916 T A XIST RNA 0.51 TCGA-43-5668-01 X 83723923 83723923 C A HDX Missense_Mutation p.V270F 0.39 deleterious(0.05) probably_damaging(0.999) TCGA-43-5668-01 X 84510709 84510709 C A ZNF711 Missense_Mutation p.A175E 0.38 tolerated(0.1) benign(0.375) TCGA-43-5668-01 X 8998330 8998330 G A FAM9B Missense_Mutation p.H85Y 0.44 deleterious(0.01) benign(0.066) TCGA-43-5668-01 X 91133162 91133162 C A PCDH11X Missense_Mutation p.F641L 0.43 tolerated(0.2) possibly_damaging(0.823) TCGA-43-5670-01 10 102055941 102055941 C T PKD2L1 Missense_Mutation p.A432T 0.24 deleterious(0.01) probably_damaging(1) TCGA-43-5670-01 10 103552620 103552620 G C MGEA5 Missense_Mutation p.I717M 0.18 deleterious(0) probably_damaging(0.972) TCGA-43-5670-01 10 117024705 117024705 C G ATRNL1 Missense_Mutation p.L575V 0.21 tolerated(0.07) probably_damaging(0.999) TCGA-43-5670-01 10 24832604 24832604 G A KIAA1217 Missense_Mutation p.E1469K 0.20 deleterious(0) probably_damaging(0.996) TCGA-43-5670-01 10 24835202 24835202 G A KIAA1217 Silent p.Q1927Q 0.12 TCGA-43-5670-01 10 89504927 89504927 C G PAPSS2 Missense_Mutation p.P554A 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-43-5670-01 10 90524317 90524317 G C LIPN Missense_Mutation p.R126T 0.40 deleterious(0.01) probably_damaging(0.94) TCGA-43-5670-01 11 115049470 115049470 C T CADM1 Silent p.S368S 0.19 TCGA-43-5670-01 11 124440348 124440348 G T OR8A1 Missense_Mutation p.E128D 0.21 deleterious(0.03) probably_damaging(0.997) TCGA-43-5670-01 11 133805998 133805998 G A IGSF9B Silent p.G257G 0.18 TCGA-43-5670-01 11 55541081 55541081 A T OR5D13 Missense_Mutation p.K56N 0.17 deleterious(0.01) benign(0.295) TCGA-43-5670-01 11 55872590 55872590 C A OR8H2 Silent p.I24I 0.18 TCGA-43-5670-01 11 61563070 61563070 C G FEN1 Missense_Mutation p.I79M 0.14 deleterious(0.04) possibly_damaging(0.9) TCGA-43-5670-01 11 63885815 63885815 C G FLRT1 3'UTR 0.42 TCGA-43-5670-01 11 65561449 65561449 C T OVOL1 Intron 0.19 TCGA-43-5670-01 11 66473171 66473171 G C SPTBN2 Missense_Mutation p.F597L 0.26 deleterious(0) probably_damaging(0.909) TCGA-43-5670-01 11 76893603 76893603 G A MYO7A Silent p.K1081K 0.15 TCGA-43-5670-01 12 109848532 109848532 G C MYO1H Missense_Mutation p.D441H 0.43 deleterious(0) probably_damaging(0.956) TCGA-43-5670-01 12 120750384 120750384 C T SIRT4 Missense_Mutation p.S208L 0.23 tolerated(0.08) benign(0.056) TCGA-43-5670-01 12 129559370 129559370 T A TMEM132D Missense_Mutation p.S784C 0.27 deleterious(0) probably_damaging(0.999) TCGA-43-5670-01 12 130841644 130841644 C A PIWIL1 Missense_Mutation p.A529E 0.35 deleterious(0) possibly_damaging(0.649) TCGA-43-5670-01 12 26551906 26551906 C G ITPR2 Silent p.L2533L 0.15 TCGA-43-5670-01 12 52912864 52912864 C T KRT5 Silent p.R212R 0.23 TCGA-43-5670-01 12 70988432 70988432 G A PTPRB Missense_Mutation p.S444F 0.32 tolerated(0.26) benign(0.029) TCGA-43-5670-01 12 80696555 80696555 C T OTOGL Nonsense_Mutation p.Q1060* 0.29 TCGA-43-5670-01 12 8673811 8673811 C A CLEC4D Missense_Mutation p.P198T 0.21 tolerated(0.58) probably_damaging(0.964) TCGA-43-5670-01 13 25745177 25745177 A C AMER2 Missense_Mutation p.L194R 0.19 deleterious(0) possibly_damaging(0.906) TCGA-43-5670-01 14 104120971 104120979 ATTATTTCT - KLC1 In_Frame_Del p.I24_S26del 0.56 TCGA-43-5670-01 14 105176008 105176008 G A INF2 Missense_Mutation p.D702N 0.16 deleterious(0) unknown(0) TCGA-43-5670-01 14 20249158 20249158 A G OR4M1 Missense_Mutation p.K226R 0.16 tolerated(1) benign(0.006) TCGA-43-5670-01 14 22447156 22447156 C T TRAV8-6 Missense_Mutation p.S46L 0.25 tolerated(0.31) benign(0.081) TCGA-43-5670-01 14 69371453 69371453 C G ACTN1 Missense_Mutation p.D199H 0.19 deleterious(0.04) probably_damaging(0.95) TCGA-43-5670-01 14 99641950 99641950 G A BCL11B Missense_Mutation p.P408L 0.44 deleterious(0.01) benign(0.124) TCGA-43-5670-01 15 28474895 28474895 G A HERC2 Silent p.L1636L 0.27 TCGA-43-5670-01 15 31196858 31196858 C T FAN1 5'UTR 0.04 TCGA-43-5670-01 15 36950052 36950052 T C C15orf41 Silent p.L98L 0.23 TCGA-43-5670-01 15 88420108 88420108 G T NTRK3 3'UTR 0.09 TCGA-43-5670-01 15 91337424 91337424 G T BLM Missense_Mutation p.R1016I 0.29 deleterious(0) benign(0.15) TCGA-43-5670-01 16 20556573 20556573 T G ACSM2B Missense_Mutation p.D396A 0.27 deleterious(0) probably_damaging(0.976) TCGA-43-5670-01 16 3452125 3452125 G A ZNF174 Missense_Mutation p.D41N 0.31 tolerated(0.37) benign(0.072) TCGA-43-5670-01 16 55362803 55362803 G C IRX6 Missense_Mutation p.E305Q 0.15 tolerated(0.15) benign(0.017) TCGA-43-5670-01 17 30678818 30678818 G C ZNF207 Missense_Mutation p.D19H 0.26 deleterious(0) benign(0.202) TCGA-43-5670-01 17 40860921 40860921 G A EZH1 Missense_Mutation p.H503Y 0.25 deleterious(0) benign(0.062) TCGA-43-5670-01 17 42756193 42756193 T C CCDC43 3'UTR 0.25 TCGA-43-5670-01 17 44400351 44400351 C T LRRC37A Missense_Mutation p.T1004I 0.42 deleterious(0) possibly_damaging(0.904) TCGA-43-5670-01 17 47882749 47882749 G C KAT7 Missense_Mutation p.R202T 0.22 tolerated(0.24) benign(0.241) TCGA-43-5670-01 17 7578280 7578280 G A TP53 Missense_Mutation p.P190L 0.54 deleterious(0.05) possibly_damaging(0.812) TCGA-43-5670-01 18 65178190 65178190 C A DSEL 3'UTR 0.24 TCGA-43-5670-01 18 8813172 8813172 G A SOGA2 Missense_Mutation p.D934N 0.15 deleterious(0) probably_damaging(0.944) TCGA-43-5670-01 19 11144143 11144143 G A SMARCA4 Missense_Mutation p.E1242K 0.21 possibly_damaging(0.45) TCGA-43-5670-01 19 1388922 1388922 C T NDUFS7 Silent p.V71V 0.38 TCGA-43-5670-01 19 23328706 23328706 A T ZNF730 Missense_Mutation p.E287V 0.31 deleterious(0) benign(0.396) TCGA-43-5670-01 19 9408006 9408006 C T ZNF699 Missense_Mutation p.D146N 0.04 tolerated(0.13) benign(0.001) TCGA-43-5670-01 1 12853483 12853483 A G PRAMEF1 Missense_Mutation p.Y36C 0.66 deleterious(0) probably_damaging(0.911) TCGA-43-5670-01 1 12885097 12885097 A - PRAMEF11 Frame_Shift_Del p.F338Lfs*22 0.29 TCGA-43-5670-01 1 167096915 167096915 G C DUSP27 Missense_Mutation p.E849D 0.21 tolerated(0.18) benign(0.015) TCGA-43-5670-01 1 175335233 175335233 C G TNR Missense_Mutation p.E699Q 0.20 tolerated(0.06) possibly_damaging(0.759) TCGA-43-5670-01 1 19181332 19181332 C T TAS1R2 Missense_Mutation p.S211N 0.92 deleterious(0) probably_damaging(0.999) TCGA-43-5670-01 1 240071106 240071106 G A CHRM3 Missense_Mutation p.V119I 0.48 tolerated(0.42) benign(0.039) TCGA-43-5670-01 1 27106649 27106649 G T ARID1A Missense_Mutation p.G2087V 0.51 probably_damaging(0.997) TCGA-43-5670-01 1 44595843 44595843 C G KLF17 Silent p.L300L 0.19 TCGA-43-5670-01 1 9815238 9815238 G A CLSTN1 Missense_Mutation p.S125L 0.20 deleterious(0) benign(0.066) TCGA-43-5670-01 20 17446185 17446185 G A PCSK2 Missense_Mutation p.V473M 0.08 tolerated(0.27) benign(0.001) TCGA-43-5670-01 20 22563665 22563665 G T FOXA2 Nonsense_Mutation p.S72* 0.10 TCGA-43-5670-01 20 24523796 24523796 G C SYNDIG1 Missense_Mutation p.K21N 0.11 deleterious(0) benign(0.093) TCGA-43-5670-01 20 36641821 36641821 G A TTI1 Missense_Mutation p.S133L 0.04 deleterious(0.01) benign(0.197) TCGA-43-5670-01 20 45618719 45618719 C G EYA2 Missense_Mutation p.R24G 0.16 tolerated_low_confidence(0.47) benign(0) TCGA-43-5670-01 20 47361673 47361673 C T PREX1 Silent p.S101S 0.20 TCGA-43-5670-01 21 41684216 41684216 A T DSCAM Silent p.V618V 0.31 TCGA-43-5670-01 21 45929132 45929132 C T TSPEAR Silent p.L568L 0.29 TCGA-43-5670-01 22 18138430 18138430 T A BCL2L13 Intron 0.17 TCGA-43-5670-01 22 19196550 19196550 C G CLTCL1 Missense_Mutation p.W1108C 0.23 deleterious(0) probably_damaging(1) TCGA-43-5670-01 22 20130720 20130720 C T ZDHHC8 Missense_Mutation p.R523C 0.22 deleterious(0) benign(0.002) TCGA-43-5670-01 22 40746004 40746004 C G ADSL Missense_Mutation p.L108V 0.28 deleterious(0) possibly_damaging(0.823) TCGA-43-5670-01 22 41625580 41625580 G C L3MBTL2 Missense_Mutation p.R642T 0.18 tolerated(0.14) benign(0.055) TCGA-43-5670-01 2 149829975 149829975 G C KIF5C Missense_Mutation p.E415Q 0.23 tolerated(0.83) benign(0) TCGA-43-5670-01 2 158114606 158114606 C T GALNT5 Silent p.I4I 0.25 TCGA-43-5670-01 2 174223524 174223524 G T CDCA7 Missense_Mutation p.D36Y 0.11 deleterious(0) probably_damaging(1) TCGA-43-5670-01 2 178481504 178481504 C T TTC30A Silent p.G642G 0.18 TCGA-43-5670-01 2 179650429 179650429 T A TTN Missense_Mutation p.H804L 0.19 TCGA-43-5670-01 2 182780686 182780686 T C SSFA2 Silent p.Y773Y 0.17 TCGA-43-5670-01 2 209010611 209010611 C A CRYGB Nonsense_Mutation p.E47* 0.17 TCGA-43-5670-01 2 219602984 219602984 G C TTLL4 Missense_Mutation p.K195N 0.25 tolerated(0.28) benign(0.002) TCGA-43-5670-01 2 235962268 235962268 C T SH3BP4 Silent p.L900L 0.16 TCGA-43-5670-01 2 24338401 24338401 C T PFN4 3'UTR 0.28 TCGA-43-5670-01 2 27664773 27664773 G A NRBP1 3'UTR 0.21 TCGA-43-5670-01 2 40397471 40397471 T A SLC8A1 Missense_Mutation p.K663M 0.23 tolerated(0.1) possibly_damaging(0.548) TCGA-43-5670-01 2 55462720 55462720 G A RPS27A 3'UTR 0.24 TCGA-43-5670-01 2 90139354 90139354 C A IGKV1D-16 Missense_Mutation p.T42N 0.37 deleterious(0.01) benign(0.259) TCGA-43-5670-01 2 98853144 98853144 C T VWA3B Missense_Mutation p.T875I 0.16 deleterious(0.03) probably_damaging(0.961) TCGA-43-5670-01 2 99726020 99726020 C G TSGA10 Intron 0.29 TCGA-43-5670-01 3 121154999 121154999 G A POLQ Nonsense_Mutation p.R2505* 0.16 TCGA-43-5670-01 3 123634058 123634058 T G CCDC14 Silent p.L769L 0.19 TCGA-43-5670-01 3 128996271 128996271 G T COPG1 3'UTR 0.23 TCGA-43-5670-01 3 129155861 129155861 G T MBD4 Missense_Mutation p.S209Y 0.25 deleterious(0) possibly_damaging(0.844) TCGA-43-5670-01 3 131442381 131442381 C T CPNE4 Missense_Mutation p.R90H 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-43-5670-01 3 14523332 14523332 G C SLC6A6 Missense_Mutation p.E569Q 0.13 tolerated(0.25) benign(0.005) TCGA-43-5670-01 3 154862189 154862189 G C MME Missense_Mutation p.Q453H 0.15 deleterious(0.02) benign(0.002) TCGA-43-5670-01 3 170732417 170732417 G A SLC2A2 Missense_Mutation p.S71L 0.08 tolerated(0.22) benign(0.004) TCGA-43-5670-01 3 170732419 170732419 G A SLC2A2 Silent p.I70I 0.08 TCGA-43-5670-01 3 190026143 190026143 G A CLDN1 Missense_Mutation p.P187S 0.21 tolerated(0.31) unknown(0) TCGA-43-5670-01 3 39433096 39433096 C T SLC25A38 Silent p.I147I 0.26 TCGA-43-5670-01 3 42573310 42573310 C G VIPR1 Missense_Mutation p.I289M 0.05 tolerated(0.08) probably_damaging(0.971) TCGA-43-5670-01 3 44764047 44764047 C T ZNF502 3'UTR 0.31 TCGA-43-5670-01 3 48474373 48474373 T C CCDC51 Silent p.L227L 0.49 TCGA-43-5670-01 3 50143135 50143135 C T RBM5 Missense_Mutation p.S283F 0.32 deleterious(0) possibly_damaging(0.557) TCGA-43-5670-01 3 50145680 50145680 C A RBM5 Missense_Mutation p.Q379K 0.16 tolerated(0.48) possibly_damaging(0.678) TCGA-43-5670-01 3 50145692 50145692 C T RBM5 Nonsense_Mutation p.Q383* 0.19 TCGA-43-5670-01 3 50147033 50147033 C A RBM5 Intron 0.15 TCGA-43-5670-01 3 50147102 50147102 C G RBM5 Missense_Mutation p.S420C 0.14 tolerated(0.05) benign(0.088) TCGA-43-5670-01 3 50151529 50151529 G T RBM5 Missense_Mutation p.K588N 0.23 deleterious(0) probably_damaging(0.966) TCGA-43-5670-01 3 50327694 50327694 G A IFRD2 Silent p.L163L 0.50 TCGA-43-5670-01 3 74411089 74411089 G A CNTN3 Missense_Mutation p.A439V 0.22 deleterious(0.02) possibly_damaging(0.582) TCGA-43-5670-01 4 156274476 156274476 C G MAP9 Missense_Mutation p.R466T 0.21 deleterious(0) probably_damaging(0.999) TCGA-43-5670-01 4 162376211 162376211 C G FSTL5 Missense_Mutation p.D596H 0.29 deleterious(0.01) probably_damaging(0.996) TCGA-43-5670-01 4 69403434 69403434 C G UGT2B17 Missense_Mutation p.C501S 0.25 deleterious(0.01) possibly_damaging(0.826) TCGA-43-5670-01 4 85746 85746 T A Z95704.2 RNA 0.25 TCGA-43-5670-01 5 10377933 10377933 G A MARCH6 Missense_Mutation p.E15K 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-43-5670-01 5 106717032 106717032 G C EFNA5 Missense_Mutation p.A204G 0.29 tolerated(0.1) benign(0.145) TCGA-43-5670-01 5 11236868 11236868 C G CTNND2 Missense_Mutation p.V566L 0.07 deleterious(0) possibly_damaging(0.777) TCGA-43-5670-01 5 115338556 115338556 T C AQPEP Silent p.L615L 0.31 TCGA-43-5670-01 5 140603724 140603724 A G PCDHB14 Missense_Mutation p.D216G 0.46 deleterious_low_confidence(0) probably_damaging(1) TCGA-43-5670-01 5 160044905 160044905 C G ATP10B Missense_Mutation p.R831T 0.14 deleterious(0.03) possibly_damaging(0.827) TCGA-43-5670-01 5 167674323 167674323 G C TENM2 Missense_Mutation p.E2127Q 0.22 deleterious(0.01) probably_damaging(0.961) TCGA-43-5670-01 5 176833049 176833049 G A F12 Silent p.T43T 0.24 TCGA-43-5670-01 5 178392461 178392461 A G ZNF454 Silent p.G352G 0.41 TCGA-43-5670-01 5 180046280 180046280 G A FLT4 Missense_Mutation p.L912F 0.36 deleterious(0) probably_damaging(1) TCGA-43-5670-01 5 23522462 23522462 A T PRDM9 Missense_Mutation p.R186S 0.07 deleterious(0.03) possibly_damaging(0.643) TCGA-43-5670-01 5 24535872 24535872 C T CDH10 Missense_Mutation p.A196T 0.40 deleterious(0.02) probably_damaging(0.975) TCGA-43-5670-01 5 5463236 5463236 G A KIAA0947 Silent p.L1263L 0.11 TCGA-43-5670-01 5 69730795 69730795 C T GTF2H2B RNA 0.27 TCGA-43-5670-01 5 90449130 90449130 G A GPR98 Silent p.P6239P 0.21 TCGA-43-5670-01 6 107076731 107076731 C T RTN4IP1 Missense_Mutation p.V56M 0.20 tolerated(0.07) probably_damaging(0.984) TCGA-43-5670-01 6 112454572 112454572 A G LAMA4 Silent p.Y1225Y 0.26 TCGA-43-5670-01 6 12296365 12296365 C A EDN1 3'UTR 0.21 TCGA-43-5670-01 6 123100874 123100874 T A FABP7 5'UTR 0.21 TCGA-43-5670-01 6 26251986 26251986 G C HIST1H2BH Missense_Mutation p.E36D 0.20 deleterious_low_confidence(0.02) benign(0.022) TCGA-43-5670-01 6 32369583 32369583 C G BTNL2 Splice_Site p.X237_splice 0.19 TCGA-43-5670-01 6 38810564 38810564 G A DNAH8 Missense_Mutation p.R1360K 0.19 probably_damaging(0.976) TCGA-43-5670-01 6 56464926 56464927 CT A DST Frame_Shift_Del p.Q1255Hfs*5 0.19 TCGA-43-5670-01 6 57472378 57472378 T G PRIM2 3'UTR 0.11 TCGA-43-5670-01 7 103183298 103183298 A T RELN Nonsense_Mutation p.L2184* 0.34 TCGA-43-5670-01 7 149191096 149191096 C G ZNF746 Missense_Mutation p.E130D 0.31 deleterious(0) possibly_damaging(0.592) TCGA-43-5670-01 7 20685462 20685462 A T ABCB5 Silent p.R254R 0.15 TCGA-43-5670-01 7 23385593 23385593 C G IGF2BP3 Missense_Mutation p.E303Q 0.23 tolerated(0.12) possibly_damaging(0.72) TCGA-43-5670-01 7 45010595 45010595 C T MYO1G Missense_Mutation p.E304K 0.25 tolerated(0.12) benign(0.006) TCGA-43-5670-01 7 65595766 65595766 T A AC068533.7 Silent p.R210R 0.26 TCGA-43-5670-01 7 87145930 87145930 T C ABCB1 Silent p.S993S 0.17 TCGA-43-5670-01 8 103354742 103354742 G C UBR5 Missense_Mutation p.P353A 0.13 deleterious(0) probably_damaging(0.93) TCGA-43-5670-01 8 110588229 110588229 C G SYBU Missense_Mutation p.V300L 0.07 tolerated(0.18) benign(0.087) TCGA-43-5670-01 8 117950667 117950667 G A AARD Missense_Mutation p.R62Q 0.16 tolerated(0.16) possibly_damaging(0.776) TCGA-43-5670-01 8 124413271 124413271 C T ATAD2 5'Flank 0.25 TCGA-43-5670-01 8 139144816 139144816 G T FAM135B 3'UTR 0.12 TCGA-43-5670-01 8 146017166 146017166 C - RPL8 Frame_Shift_Del p.G91Afs*58 0.17 TCGA-43-5670-01 8 28309778 28309778 C A FBXO16 Missense_Mutation p.M241I 0.39 tolerated(1) benign(0) TCGA-43-5670-01 8 33369594 33369594 G A TTI2 Missense_Mutation p.L180F 0.16 deleterious(0.02) benign(0.33) TCGA-43-5670-01 8 37732681 37732681 T C RAB11FIP1 Missense_Mutation p.Y325C 0.16 deleterious(0) probably_damaging(0.999) TCGA-43-5670-01 8 51442764 51442764 C A SNTG1 Missense_Mutation p.T165N 0.15 deleterious(0.04) benign(0.397) TCGA-43-5670-01 8 6299617 6299617 A C MCPH1 Missense_Mutation p.N204H 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-43-5670-01 8 63927907 63927907 C T GGH Missense_Mutation p.C314Y 0.13 tolerated(0.24) possibly_damaging(0.541) TCGA-43-5670-01 8 87568468 87568468 G C CPNE3 Missense_Mutation p.E465Q 0.21 tolerated(0.29) probably_damaging(0.999) TCGA-43-5670-01 8 93029522 93029522 G T RUNX1T1 Missense_Mutation p.P64H 0.12 deleterious(0) probably_damaging(0.998) TCGA-43-5670-01 9 114454488 114454488 C G C9orf84 Missense_Mutation p.D1193H 0.27 deleterious(0) possibly_damaging(0.847) TCGA-43-5670-01 9 139391554 139391554 C G NOTCH1 Missense_Mutation p.V2213L 0.18 tolerated(0.1) possibly_damaging(0.621) TCGA-43-5670-01 9 32631546 32631546 G A TAF1L Silent p.F1344F 0.26 TCGA-43-5670-01 9 79933377 79933377 C G VPS13A Missense_Mutation p.S1728C 0.25 deleterious(0) probably_damaging(0.987) TCGA-43-5670-01 9 8375990 8375990 C A PTPRD Missense_Mutation p.R1536L 0.25 deleterious(0) probably_damaging(0.994) TCGA-43-5670-01 X 119760307 119760307 C G C1GALT1C1 Missense_Mutation p.D239H 0.30 deleterious(0) probably_damaging(1) TCGA-43-5670-01 X 136649569 136649569 T G ZIC3 Missense_Mutation p.F240C 0.23 deleterious(0) probably_damaging(0.921) TCGA-43-5670-01 X 149100888 149100888 C T CXorf40B Silent p.K117K 0.58 TCGA-43-5670-01 X 154020463 154020463 C T MPP1 Missense_Mutation p.R67Q 0.23 tolerated(0.57) benign(0.01) TCGA-43-5670-01 X 2928099 2928099 G A ARSH Missense_Mutation p.E41K 0.36 deleterious(0.04) probably_damaging(0.916) TCGA-43-5670-01 X 34961519 34961519 C A FAM47B Missense_Mutation p.P191T 0.34 tolerated(0.13) possibly_damaging(0.779) TCGA-43-5670-01 X 55041274 55041274 C T ALAS2 Missense_Mutation p.R448Q 0.36 tolerated(0.16) benign(0.427) TCGA-43-6143-01 10 107005322 107005322 G T SORCS3 Missense_Mutation p.S964I 0.48 deleterious(0.01) possibly_damaging(0.805) TCGA-43-6143-01 10 107016620 107016620 G A SORCS3 Missense_Mutation p.M1127I 0.61 tolerated(0.21) benign(0.028) TCGA-43-6143-01 10 122334709 122334709 G T PPAPDC1A Missense_Mutation p.S171I 0.58 tolerated(0.16) benign(0.003) TCGA-43-6143-01 10 134743117 134743117 C A TTC40 Intron 0.65 TCGA-43-6143-01 10 135000076 135000076 C A KNDC1 Silent p.A408A 0.11 TCGA-43-6143-01 10 135440199 135440199 C A FRG2B Missense_Mutation p.Q16H 0.05 tolerated(0.05) possibly_damaging(0.452) TCGA-43-6143-01 10 26849102 26849102 C A APBB1IP Missense_Mutation p.N408K 0.26 deleterious(0.04) benign(0.216) TCGA-43-6143-01 10 26849116 26849116 G C APBB1IP Missense_Mutation p.G413A 0.26 tolerated(0.07) probably_damaging(0.946) TCGA-43-6143-01 10 28024303 28024303 C T MKX Missense_Mutation p.V117M 0.31 deleterious(0) probably_damaging(1) TCGA-43-6143-01 10 28151364 28151364 G T ARMC4 Missense_Mutation p.T933K 0.43 deleterious(0) benign(0.424) TCGA-43-6143-01 10 52005134 52005134 T A ASAH2 Missense_Mutation p.T70S 0.61 tolerated_low_confidence(0.44) benign(0.001) TCGA-43-6143-01 10 54074771 54074771 G T DKK1 Missense_Mutation p.C111F 0.28 deleterious(0) probably_damaging(1) TCGA-43-6143-01 10 63957639 63957639 T C RTKN2 3'UTR 0.54 TCGA-43-6143-01 10 71265996 71265996 G T TSPAN15 Missense_Mutation p.Q245H 0.40 deleterious(0) probably_damaging(1) TCGA-43-6143-01 10 71332658 71332658 C T NEUROG3 Missense_Mutation p.E48K 0.21 tolerated(0.07) benign(0.257) TCGA-43-6143-01 10 74899087 74899087 G A ECD Silent p.H500H 0.12 TCGA-43-6143-01 10 81058846 81058847 GG - ZMIZ1 Frame_Shift_Del p.D570Wfs*35 0.40 TCGA-43-6143-01 10 98743831 98743831 G T C10orf12 Missense_Mutation p.R895L 0.37 deleterious(0) probably_damaging(0.97) TCGA-43-6143-01 11 116744752 116744752 A G SIK3 Missense_Mutation p.L425P 0.51 tolerated_low_confidence(0.05) possibly_damaging(0.903) TCGA-43-6143-01 11 118498595 118498595 G A PHLDB1 Silent p.L352L 0.18 TCGA-43-6143-01 11 121391474 121391474 G A SORL1 Silent p.S440S 0.53 TCGA-43-6143-01 11 125496665 125496665 T C CHEK1 Translation_Start_Site p.M1? 0.43 deleterious(0) probably_damaging(0.989) TCGA-43-6143-01 11 49974874 49974874 T A OR4C13 Nonsense_Mutation p.C300* 0.81 TCGA-43-6143-01 11 5068285 5068285 C A OR52J3 Missense_Mutation p.A177D 0.86 deleterious(0) possibly_damaging(0.72) TCGA-43-6143-01 11 55032389 55032389 G C TRIM48 Missense_Mutation p.G20R 0.95 tolerated(0.33) benign(0.007) TCGA-43-6143-01 11 55433052 55433052 G T OR4C6 Missense_Mutation p.R137L 0.37 deleterious_low_confidence(0.02) benign(0.319) TCGA-43-6143-01 11 55433053 55433053 G T OR4C6 Silent p.R137R 0.36 TCGA-43-6143-01 11 55681456 55681456 G T OR5W2 Silent p.T201T 0.44 TCGA-43-6143-01 11 563234 563234 T A RASSF7 Missense_Mutation p.C290S 0.88 deleterious(0) probably_damaging(0.997) TCGA-43-6143-01 11 56954748 56954748 C G LRRC55 Missense_Mutation p.P274A 0.38 tolerated(0.82) possibly_damaging(0.879) TCGA-43-6143-01 11 57155270 57155270 C A PRG2 Missense_Mutation p.Q189H 0.33 deleterious(0.05) probably_damaging(0.994) TCGA-43-6143-01 11 57958004 57958004 T C OR9Q2 Silent p.L14L 0.45 TCGA-43-6143-01 11 59271742 59271742 G C OR4D11 Missense_Mutation p.G232R 0.20 deleterious(0.01) probably_damaging(0.947) TCGA-43-6143-01 11 59480597 59480597 G T OR10V1 Missense_Mutation p.T241N 0.43 deleterious(0) probably_damaging(1) TCGA-43-6143-01 11 60184470 60184470 C A MS4A14 Missense_Mutation p.L710M 0.19 tolerated_low_confidence(0.19) benign(0) TCGA-43-6143-01 11 6023918 6023918 A T OR56A4 Missense_Mutation p.L154H 0.71 deleterious(0) probably_damaging(0.917) TCGA-43-6143-01 11 61960877 61960877 A G SCGB1D1 Missense_Mutation p.I84V 0.44 tolerated(0.19) benign(0.165) TCGA-43-6143-01 11 67046935 67046935 G A ADRBK1 Missense_Mutation p.R104H 0.09 tolerated(0.53) possibly_damaging(0.505) TCGA-43-6143-01 11 67196008 67196008 G T RPS6KB2 5'UTR 0.43 TCGA-43-6143-01 11 67196009 67196009 G T RPS6KB2 5'UTR 0.39 TCGA-43-6143-01 11 78381477 78381477 T A TENM4 Silent p.S1971S 0.50 TCGA-43-6143-01 11 85597249 85597249 G T CCDC83 Missense_Mutation p.R117L 0.37 tolerated(0.1) possibly_damaging(0.884) TCGA-43-6143-01 11 85627158 85627158 A G CCDC83 Missense_Mutation p.H352R 0.53 tolerated(0.6) benign(0.009) TCGA-43-6143-01 11 95825738 95825738 C T MAML2 Missense_Mutation p.G486D 0.41 benign(0.439) TCGA-43-6143-01 12 15702086 15702086 C A PTPRO Missense_Mutation p.A788D 0.88 deleterious(0.01) benign(0.243) TCGA-43-6143-01 12 15702087 15702087 C A PTPRO Silent p.A788A 0.88 TCGA-43-6143-01 12 275002 275002 G A IQSEC3 Missense_Mutation p.D973N 0.07 deleterious(0) probably_damaging(0.978) TCGA-43-6143-01 12 28544295 28544295 C T CCDC91 Missense_Mutation p.S238F 0.17 tolerated(0.12) possibly_damaging(0.731) TCGA-43-6143-01 12 347143 347143 G C SLC6A13 Missense_Mutation p.S171C 0.14 tolerated(0.08) probably_damaging(0.926) TCGA-43-6143-01 12 40041652 40041652 G A C12orf40 Missense_Mutation p.C148Y 0.90 tolerated(0.39) benign(0.081) TCGA-43-6143-01 12 48358089 48358089 G T TMEM106C Missense_Mutation p.G24C 0.38 deleterious(0.03) possibly_damaging(0.574) TCGA-43-6143-01 12 58347452 58347452 G C XRCC6BP1 Missense_Mutation p.G173R 0.81 tolerated(0.06) probably_damaging(0.967) TCGA-43-6143-01 12 69250352 69250352 T C CPM Silent p.Q399Q 0.94 TCGA-43-6143-01 12 71955575 71955575 A G LGR5 Missense_Mutation p.N267S 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-43-6143-01 12 7640453 7640453 C T CD163 Missense_Mutation p.E551K 0.74 deleterious(0) probably_damaging(1) TCGA-43-6143-01 13 25914306 25914306 G T NUPL1 3'UTR 0.98 TCGA-43-6143-01 13 33628177 33628177 G A KL Missense_Mutation p.D365N 0.88 deleterious(0) probably_damaging(1) TCGA-43-6143-01 13 48947589 48947593 AAGTG - RB1 Frame_Shift_Del p.D394Tfs*10 0.76 TCGA-43-6143-01 13 61985741 61985741 C A PCDH20 Nonsense_Mutation p.E831* 0.90 TCGA-43-6143-01 13 96547515 96547529 TAAAAATCTTCTGCA - UGGT2 In_Frame_Del p.A889_Y893del 0.14 TCGA-43-6143-01 14 20249350 20249350 C A OR4M1 Missense_Mutation p.T290K 0.30 deleterious(0) probably_damaging(0.999) TCGA-43-6143-01 14 20389688 20389688 C A OR4K5 Missense_Mutation p.P308Q 0.26 tolerated(0.29) possibly_damaging(0.602) TCGA-43-6143-01 14 60069840 60069840 G T RTN1 Missense_Mutation p.A744E 0.46 deleterious(0) probably_damaging(0.966) TCGA-43-6143-01 14 63757659 63757659 G C RHOJ Missense_Mutation p.D188H 0.55 deleterious(0) probably_damaging(1) TCGA-43-6143-01 14 81421894 81421894 G C TSHR 5'UTR 0.59 TCGA-43-6143-01 14 95690189 95690189 T G CLMN Missense_Mutation p.N50H 0.30 deleterious(0.02) probably_damaging(0.967) TCGA-43-6143-01 15 22369335 22369335 G - OR4M2 Frame_Shift_Del p.P255Hfs*15 0.16 TCGA-43-6143-01 15 30029502 30029502 T A TJP1 Missense_Mutation p.K458M 0.45 deleterious(0.01) probably_damaging(0.971) TCGA-43-6143-01 15 33961618 33961618 G T RYR3 Nonsense_Mutation p.E1895* 0.41 TCGA-43-6143-01 15 33961619 33961619 A G RYR3 Missense_Mutation p.E1895G 0.44 possibly_damaging(0.549) TCGA-43-6143-01 15 33999173 33999173 C T RYR3 Silent p.A2179A 0.51 TCGA-43-6143-01 15 34146970 34146970 T - RYR3 Frame_Shift_Del p.L4623Sfs*34 0.36 TCGA-43-6143-01 15 42034848 42034848 G - MGA Frame_Shift_Del p.T1565Hfs*11 0.34 TCGA-43-6143-01 15 63029096 63029096 G T TLN2 Silent p.T1126T 0.36 TCGA-43-6143-01 15 64048842 64048842 G A HERC1 Nonsense_Mutation p.Q443* 0.39 TCGA-43-6143-01 15 64791889 64791889 A T ZNF609 Nonsense_Mutation p.K91* 0.46 TCGA-43-6143-01 15 76074514 76074514 G C RN7SL319P 5'Flank 0.32 TCGA-43-6143-01 15 76225414 76225414 G T FBXO22 Missense_Mutation p.A395S 0.45 tolerated(0.23) benign(0.119) TCGA-43-6143-01 15 83455327 83455327 T C FSD2 Missense_Mutation p.E224G 0.30 deleterious(0) probably_damaging(0.986) TCGA-43-6143-01 15 84592663 84592663 A T ADAMTSL3 Missense_Mutation p.Q665H 0.35 deleterious(0) probably_damaging(0.928) TCGA-43-6143-01 15 84592664 84592664 G T ADAMTSL3 Nonsense_Mutation p.E666* 0.36 TCGA-43-6143-01 15 91452555 91452555 A T MAN2A2 Splice_Site p.X399_splice 0.65 TCGA-43-6143-01 16 12061466 12061466 A C TNFRSF17 Missense_Mutation p.K106T 0.18 tolerated(0.54) benign(0.035) TCGA-43-6143-01 16 1827785 1827785 G A SPSB3 Silent p.H228H 0.53 TCGA-43-6143-01 16 20328621 20328621 T C GP2 Missense_Mutation p.M447V 0.42 tolerated(0.07) benign(0.393) TCGA-43-6143-01 16 21994598 21994598 G T UQCRC2 3'UTR 0.45 TCGA-43-6143-01 16 24373169 24373169 C T CACNG3 Silent p.R311R 0.46 TCGA-43-6143-01 16 2816402 2816402 C G SRRM2 Missense_Mutation p.S1958C 0.33 benign(0.184) TCGA-43-6143-01 16 28877797 28877797 G T SH2B1 Missense_Mutation p.D128Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-43-6143-01 16 31088353 31088353 G A ZNF646 Silent p.E236E 0.19 TCGA-43-6143-01 16 31141588 31141588 G T KAT8 Nonsense_Mutation p.E305* 0.37 TCGA-43-6143-01 16 33020884 33020884 C A IGHV3OR16-8 Missense_Mutation p.P98T 0.49 deleterious_low_confidence(0.01) benign(0) TCGA-43-6143-01 16 47694647 47694647 G T PHKB Missense_Mutation p.A705S 0.43 tolerated(0.49) benign(0.021) TCGA-43-6143-01 16 52473000 52473000 T C TOX3 3'UTR 0.33 TCGA-43-6143-01 16 55583305 55583305 G A LPCAT2 Missense_Mutation p.R351Q 0.37 tolerated(0.36) benign(0) TCGA-43-6143-01 16 58612662 58612662 T C CNOT1 Missense_Mutation p.I509V 0.41 tolerated(0.33) benign(0.045) TCGA-43-6143-01 16 58633245 58633245 T A CNOT1 5'UTR 0.60 TCGA-43-6143-01 16 75269714 75269714 C A BCAR1 Silent p.V407V 0.44 TCGA-43-6143-01 16 81204619 81204619 T C PKD1L2 3'Flank 0.49 TCGA-43-6143-01 17 10222449 10222449 G C MYH13 Silent p.L1132L 0.84 TCGA-43-6143-01 17 35614769 35614769 C T ACACA Missense_Mutation p.G561E 0.61 deleterious(0) probably_damaging(0.923) TCGA-43-6143-01 17 41879023 41879023 A G MPP3 3'UTR 0.33 TCGA-43-6143-01 17 47810055 47810055 T C FAM117A Missense_Mutation p.E75G 0.56 deleterious(0.02) benign(0.407) TCGA-43-6143-01 17 61902894 61902894 A G FTSJ3 Splice_Site p.X134_splice 0.63 TCGA-43-6143-01 17 73747062 73747062 C A ITGB4 Missense_Mutation p.S1221R 0.53 deleterious(0) probably_damaging(0.998) TCGA-43-6143-01 17 7578208 7578208 T C TP53 Missense_Mutation p.H214R 0.70 deleterious(0.02) probably_damaging(0.922) TCGA-43-6143-01 18 13621229 13621229 C T LDLRAD4 Missense_Mutation p.R99C 0.21 deleterious(0) probably_damaging(0.95) TCGA-43-6143-01 18 25572701 25572701 C G CDH2 Missense_Mutation p.R421T 0.54 tolerated(0.25) possibly_damaging(0.773) TCGA-43-6143-01 18 33234650 33234650 G A GALNT1 Silent p.K8K 0.41 TCGA-43-6143-01 18 54339771 54339771 C T WDR7 Missense_Mutation p.P9S 0.05 deleterious(0) probably_damaging(0.998) TCGA-43-6143-01 18 59807680 59807680 A T PIGN Silent p.I332I 0.16 TCGA-43-6143-01 18 74672689 74672689 C T ZNF236 Missense_Mutation p.A1764V 0.03 deleterious(0.03) possibly_damaging(0.881) TCGA-43-6143-01 19 10600339 10600339 T C KEAP1 Missense_Mutation p.I506V 0.87 tolerated(0.3) benign(0.001) TCGA-43-6143-01 19 13397667 13397667 A T CACNA1A Missense_Mutation p.M1068K 0.82 benign(0.013) TCGA-43-6143-01 19 14952418 14952418 A T OR7A10 Missense_Mutation p.V91D 0.87 deleterious_low_confidence(0.01) benign(0.014) TCGA-43-6143-01 19 15354077 15354077 G A BRD4 Silent p.L935L 0.80 TCGA-43-6143-01 19 17435645 17435645 C G ANO8 Missense_Mutation p.G1071A 0.82 tolerated_low_confidence(0.17) unknown(0) TCGA-43-6143-01 19 19752824 19752824 T C GMIP Silent p.S47S 0.87 TCGA-43-6143-01 19 22847553 22847553 G T ZNF492 Missense_Mutation p.G361V 0.35 deleterious(0.01) possibly_damaging(0.549) TCGA-43-6143-01 19 36145572 36145572 G T COX6B1 Missense_Mutation p.W69L 0.58 deleterious(0.01) probably_damaging(0.994) TCGA-43-6143-01 19 37903520 37903520 G C ZNF569 Missense_Mutation p.H680Q 0.29 deleterious(0) probably_damaging(0.982) TCGA-43-6143-01 19 42410651 42410651 A G ARHGEF1 Missense_Mutation p.N860S 0.41 tolerated(1) benign(0.001) TCGA-43-6143-01 19 43262165 43262165 A C PSG8 Missense_Mutation p.L233R 0.44 deleterious(0) probably_damaging(0.998) TCGA-43-6143-01 19 43699232 43699232 C T PSG4 Silent p.T301T 0.43 TCGA-43-6143-01 19 45899860 45899860 C A PPP1R13L Missense_Mutation p.G219W 0.45 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-43-6143-01 19 46842791 46842791 C A HIF3A Missense_Mutation p.P641H 0.51 deleterious_low_confidence(0) possibly_damaging(0.778) TCGA-43-6143-01 19 53912694 53912694 G T ZNF765 3'UTR 0.29 TCGA-43-6143-01 19 54072558 54072558 C T ZNF331 Intron 0.30 TCGA-43-6143-01 19 54140202 54140202 G T DPRX Missense_Mutation p.G179V 0.32 tolerated(0.27) benign(0.011) TCGA-43-6143-01 19 55263688 55263688 G A KIR2DL3 Missense_Mutation p.E281K 0.32 deleterious(0) benign(0.178) TCGA-43-6143-01 19 55401161 55401161 C T FCAR Missense_Mutation p.P266S 0.49 tolerated(0.99) benign(0.006) TCGA-43-6143-01 19 5664451 5664451 G T SAFB Splice_Site p.X778_splice 0.93 TCGA-43-6143-01 19 57641067 57641067 T C USP29 Missense_Mutation p.C342R 0.52 tolerated(0.13) probably_damaging(0.999) TCGA-43-6143-01 19 58099911 58099911 G T ZIK1 Missense_Mutation p.C26F 0.40 tolerated(0.41) benign(0.01) TCGA-43-6143-01 19 58452250 58452250 C A ZNF256 3'UTR 0.88 TCGA-43-6143-01 19 9058961 9058961 G A MUC16 Silent p.T9495T 0.19 TCGA-43-6143-01 1 100819406 100819406 A T CDC14A Missense_Mutation p.E46D 0.57 tolerated(0.09) benign(0.146) TCGA-43-6143-01 1 109810620 109810620 G T CELSR2 Missense_Mutation p.A2086S 0.38 tolerated(0.42) benign(0.193) TCGA-43-6143-01 1 110467449 110467449 A T CSF1 Missense_Mutation p.S541C 0.31 deleterious(0) probably_damaging(0.992) TCGA-43-6143-01 1 116519279 116519279 G A SLC22A15 Missense_Mutation p.G11R 0.24 deleterious(0) probably_damaging(0.999) TCGA-43-6143-01 1 12383778 12383778 G C VPS13D Missense_Mutation p.R2644T 0.05 benign(0.031) TCGA-43-6143-01 1 150444718 150444718 G T RPRD2 Missense_Mutation p.M1098I 0.41 tolerated_low_confidence(0.11) benign(0.018) TCGA-43-6143-01 1 150526475 150526475 C A ADAMTSL4 Silent p.G336G 0.50 TCGA-43-6143-01 1 154129975 154129975 G A NUP210L 5'Flank 0.51 TCGA-43-6143-01 1 154316910 154316910 C T ATP8B2 Missense_Mutation p.T725M 0.40 deleterious(0.01) probably_damaging(0.939) TCGA-43-6143-01 1 156622070 156622070 C A BCAN Missense_Mutation p.T443K 0.53 tolerated(0.9) benign(0.091) TCGA-43-6143-01 1 156639207 156639207 C A NES Missense_Mutation p.W1591C 0.58 deleterious(0) probably_damaging(0.969) TCGA-43-6143-01 1 161680553 161680553 C A FCRLA Missense_Mutation p.A51D 0.47 deleterious_low_confidence(0.01) probably_damaging(0.938) TCGA-43-6143-01 1 162829412 162829412 G T C1orf110 Missense_Mutation p.Q9K 0.45 tolerated(0.07) benign(0.173) TCGA-43-6143-01 1 163117197 163117197 G T RGS5 Missense_Mutation p.L165M 0.49 deleterious(0) probably_damaging(1) TCGA-43-6143-01 1 16358202 16358202 C A CLCNKA Intron 0.54 TCGA-43-6143-01 1 165398161 165398161 G T RXRG Missense_Mutation p.A31E 0.38 tolerated_low_confidence(1) benign(0.042) TCGA-43-6143-01 1 172635292 172635292 G T FASLG 3'UTR 0.50 TCGA-43-6143-01 1 175372337 175372337 T C TNR Silent p.G305G 0.47 TCGA-43-6143-01 1 176983989 176983989 G C ASTN1 Silent p.G487G 0.06 TCGA-43-6143-01 1 186316424 186316424 C G TPR Missense_Mutation p.Q981H 0.35 benign(0.018) TCGA-43-6143-01 1 193218893 193218893 G T CDC73 Missense_Mutation p.R484L 0.60 deleterious(0.03) benign(0.112) TCGA-43-6143-01 1 196303136 196303136 G T KCNT2 Missense_Mutation p.T613N 0.04 tolerated(0.39) benign(0.002) TCGA-43-6143-01 1 196963327 196963327 G T CFHR5 Missense_Mutation p.G183V 0.47 deleterious(0) probably_damaging(0.983) TCGA-43-6143-01 1 200143385 200143385 G T NR5A2 3'UTR 0.14 TCGA-43-6143-01 1 200550341 200550341 T C KIF14 Missense_Mutation p.Y1108C 0.69 deleterious(0.04) probably_damaging(0.947) TCGA-43-6143-01 1 204380189 204380189 G A PPP1R15B Silent p.A117A 0.34 TCGA-43-6143-01 1 204588804 204588804 G A LRRN2 Missense_Mutation p.S106L 0.44 deleterious(0) possibly_damaging(0.653) TCGA-43-6143-01 1 205272758 205272758 C A NUAK2 Silent p.R569R 0.18 TCGA-43-6143-01 1 206239444 206239444 T A C1orf186 Missense_Mutation p.S152C 0.77 deleterious(0) possibly_damaging(0.513) TCGA-43-6143-01 1 207718772 207718772 G T CR1 Missense_Mutation p.A786S 0.37 tolerated(0.73) possibly_damaging(0.819) TCGA-43-6143-01 1 212798339 212798339 C A FAM71A Missense_Mutation p.F40L 0.71 deleterious(0) possibly_damaging(0.765) TCGA-43-6143-01 1 218607483 218607483 G C TGFB2 Silent p.V218V 0.16 TCGA-43-6143-01 1 224420909 224420909 C T NVL Missense_Mutation p.E817K 0.10 tolerated(0.66) benign(0.001) TCGA-43-6143-01 1 229568390 229568390 G T ACTA1 Missense_Mutation p.Q123K 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.462) TCGA-43-6143-01 1 233114004 233114004 A C NTPCR 3'UTR 0.36 TCGA-43-6143-01 1 24384007 24384007 C G MYOM3 Silent p.G1387G 0.72 TCGA-43-6143-01 1 247599379 247599379 A T NLRP3 Missense_Mutation p.D869V 0.21 deleterious(0) probably_damaging(0.98) TCGA-43-6143-01 1 248028112 248028112 G T TRIM58 Nonsense_Mutation p.E208* 0.31 TCGA-43-6143-01 1 248202041 248202041 C T OR2L2 Missense_Mutation p.H158Y 0.70 deleterious(0.03) possibly_damaging(0.521) TCGA-43-6143-01 1 248637193 248637193 G C OR2T3 Missense_Mutation p.S181T 0.69 deleterious(0) benign(0.082) TCGA-43-6143-01 1 248685741 248685741 G A OR2G6 Missense_Mutation p.R265K 0.16 tolerated(0.12) benign(0.002) TCGA-43-6143-01 1 248737801 248737801 C A OR2T34 Missense_Mutation p.M86I 0.18 deleterious(0.03) benign(0.012) TCGA-43-6143-01 1 248845393 248845393 G T OR14I1 Nonsense_Mutation p.Y71* 0.60 TCGA-43-6143-01 1 34035025 34035025 G C CSMD2 Missense_Mutation p.R2696G 0.48 deleterious(0.01) probably_damaging(1) TCGA-43-6143-01 1 34663015 34663015 T C C1orf94 Silent p.S170S 0.61 TCGA-43-6143-01 1 35578967 35578967 G T ZMYM1 Missense_Mutation p.K512N 0.05 deleterious(0.01) probably_damaging(0.993) TCGA-43-6143-01 1 3669365 3669365 T C CCDC27 Splice_Site p.X106_splice 0.33 TCGA-43-6143-01 1 38227015 38227015 T C EPHA10 Intron 0.30 TCGA-43-6143-01 1 39757596 39757596 A T MACF1 Silent p.R605R 0.74 TCGA-43-6143-01 1 39823278 39823278 C A MACF1 Missense_Mutation p.H1824N 0.09 possibly_damaging(0.655) TCGA-43-6143-01 1 45241263 45241263 C G RPS8 5'UTR 0.21 TCGA-43-6143-01 1 45291982 45291982 G A PTCH2 Silent p.P1018P 0.29 TCGA-43-6143-01 1 4834552 4834552 C G AJAP1 Missense_Mutation p.S410C 0.20 deleterious(0) possibly_damaging(0.843) TCGA-43-6143-01 1 54610420 54610420 A G CDCP2 Missense_Mutation p.L49P 0.36 tolerated(0.23) benign(0.282) TCGA-43-6143-01 1 66036306 66036306 A T LEPR Missense_Mutation p.Y64F 0.35 tolerated(0.66) benign(0.187) TCGA-43-6143-01 1 72748157 72748157 C A NEGR1 Silent p.V7V 0.07 TCGA-43-6143-01 1 75037348 75037348 G A C1orf173 Missense_Mutation p.T1349M 0.32 tolerated(0.18) benign(0.006) TCGA-43-6143-01 1 77987624 77987624 G A AK5 Missense_Mutation p.R475H 0.36 tolerated(0.09) benign(0.02) TCGA-43-6143-01 20 17338980 17338980 G T PCSK2 Missense_Mutation p.M97I 0.07 tolerated(0.1) benign(0) TCGA-43-6143-01 20 23731348 23731348 G T CST1 Silent p.I52I 0.59 TCGA-43-6143-01 20 31017235 31017235 G A ASXL1 Splice_Site p.X189_splice 0.18 TCGA-43-6143-01 20 36641556 36641556 G A TTI1 Silent p.I221I 0.12 TCGA-43-6143-01 20 36953175 36953175 G C BPI Splice_Site p.X316_splice 0.69 TCGA-43-6143-01 20 41385134 41385134 C T PTPRT Missense_Mutation p.G276D 0.10 deleterious(0) probably_damaging(0.983) TCGA-43-6143-01 20 44424038 44424038 G A DNTTIP1 Missense_Mutation p.A110T 0.67 tolerated(1) benign(0.004) TCGA-43-6143-01 20 44569577 44569577 G A PCIF1 Missense_Mutation p.E173K 0.27 tolerated(0.68) benign(0.052) TCGA-43-6143-01 20 47307609 47307609 G A PREX1 Silent p.T354T 0.21 TCGA-43-6143-01 20 60701381 60701381 G T LSM14B Missense_Mutation p.A105S 0.69 tolerated(0.98) benign(0.012) TCGA-43-6143-01 21 22707972 22707972 C G NCAM2 Missense_Mutation p.F295L 0.26 tolerated(0.64) benign(0.008) TCGA-43-6143-01 21 22910202 22910202 C A NCAM2 Missense_Mutation p.A813D 0.64 tolerated(0.59) benign(0.085) TCGA-43-6143-01 21 45738464 45738464 G T PFKL Nonsense_Mutation p.E350* 0.75 TCGA-43-6143-01 21 45959214 45959214 G C KRTAP10-1 Missense_Mutation p.R274G 0.73 deleterious(0) unknown(0) TCGA-43-6143-01 22 19001948 19001948 G A DGCR9 5'Flank 0.23 TCGA-43-6143-01 22 23248586 23248586 C T IGLC3 Silent p.L26L 0.60 TCGA-43-6143-01 22 24121395 24121395 G C MMP11 Missense_Mutation p.E44Q 0.21 tolerated_low_confidence(0.55) unknown(0) TCGA-43-6143-01 22 24121524 24121524 G A MMP11 Missense_Mutation p.D87N 0.27 tolerated(0.24) benign(0.005) TCGA-43-6143-01 22 24121532 24121532 G C MMP11 Silent p.L89L 0.28 TCGA-43-6143-01 22 30891954 30891954 T A SEC14L4 Silent p.R45R 0.40 TCGA-43-6143-01 22 31535854 31535854 C T PLA2G3 Missense_Mutation p.D163N 0.08 tolerated(0.28) benign(0.083) TCGA-43-6143-01 22 32010810 32010810 G T SFI1 Missense_Mutation p.R1011L 0.59 deleterious(0.01) benign(0.421) TCGA-43-6143-01 22 32644773 32644773 A G SLC5A4 Missense_Mutation p.L110P 0.40 deleterious(0.01) benign(0.008) TCGA-43-6143-01 22 37578345 37578345 G T C1QTNF6 Nonsense_Mutation p.Y240* 0.69 TCGA-43-6143-01 22 37578618 37578618 G A C1QTNF6 Silent p.G149G 0.50 TCGA-43-6143-01 22 38212584 38212584 C G GCAT Silent p.V399V 0.40 TCGA-43-6143-01 22 40055036 40055037 - G CACNA1I Frame_Shift_Ins p.R750Afs*121 0.26 TCGA-43-6143-01 22 40754992 40754992 G T ADSL Missense_Mutation p.G203C 0.49 deleterious(0) probably_damaging(1) TCGA-43-6143-01 22 43936136 43936136 C A EFCAB6 Missense_Mutation p.M1250I 0.24 tolerated(0.37) benign(0.003) TCGA-43-6143-01 2 10101193 10101193 G T GRHL1 Silent p.V99V 0.50 TCGA-43-6143-01 2 112536327 112536327 G C ANAPC1 Silent p.L1770L 0.23 TCGA-43-6143-01 2 118865897 118865897 G A INSIG2 Silent p.%3D 0.19 TCGA-43-6143-01 2 122285374 122285374 C G CLASP1 Splice_Site p.X157_splice 0.62 TCGA-43-6143-01 2 128409093 128409093 T A GPR17 Missense_Mutation p.Y290N 0.87 tolerated(0.1) possibly_damaging(0.555) TCGA-43-6143-01 2 132021104 132021104 G T POTEE Missense_Mutation p.K692N 0.33 deleterious_low_confidence(0) benign(0.135) TCGA-43-6143-01 2 138373750 138373750 C G THSD7B Missense_Mutation p.C1146W 0.87 deleterious(0) unknown(0) TCGA-43-6143-01 2 138373770 138373770 G A THSD7B Missense_Mutation p.R1153K 0.88 tolerated(0.88) unknown(0) TCGA-43-6143-01 2 149227683 149227683 G A MBD5 Missense_Mutation p.G724E 0.24 deleterious(0.04) probably_damaging(0.969) TCGA-43-6143-01 2 167304128 167304128 T G SCN7A Missense_Mutation p.K461Q 0.89 tolerated(0.08) benign(0.101) TCGA-43-6143-01 2 179449700 179449700 A C TTN Intron 0.93 TCGA-43-6143-01 2 179509320 179509320 C G TTN Missense_Mutation p.E13478Q 0.19 TCGA-43-6143-01 2 1947066 1947066 C A MYT1L Missense_Mutation p.D65Y 0.85 deleterious(0) unknown(0) TCGA-43-6143-01 2 200790045 200790045 T C C2orf69 Silent p.S198S 0.96 TCGA-43-6143-01 2 207988717 207988717 C A KLF7 Missense_Mutation p.A172S 0.93 tolerated(1) benign(0.001) TCGA-43-6143-01 2 216296604 216296604 A T FN1 Missense_Mutation p.C167S 0.94 deleterious(0) probably_damaging(0.998) TCGA-43-6143-01 2 216296609 216296609 A C FN1 Nonsense_Mutation p.L165* 0.93 TCGA-43-6143-01 2 219513804 219513804 G A ZNF142 Missense_Mutation p.T276M 0.12 deleterious(0.02) probably_damaging(0.938) TCGA-43-6143-01 2 219878062 219878062 C A CCDC108 Silent p.P1292P 0.92 TCGA-43-6143-01 2 220075486 220075486 C T ABCB6 Missense_Mutation p.V735I 0.23 deleterious(0.02) benign(0.256) TCGA-43-6143-01 2 220494096 220494096 G T SLC4A3 Missense_Mutation p.A150S 0.91 tolerated_low_confidence(0.71) benign(0.033) TCGA-43-6143-01 2 231159004 231159004 C T SP140 Missense_Mutation p.P663S 0.60 tolerated(0.07) possibly_damaging(0.677) TCGA-43-6143-01 2 31467261 31467261 G A EHD3 Missense_Mutation p.D117N 0.62 tolerated(0.08) possibly_damaging(0.517) TCGA-43-6143-01 2 33810284 33810284 C T FAM98A Silent p.G372G 0.10 TCGA-43-6143-01 2 39250233 39250233 T A SOS1 Missense_Mutation p.M446L 0.31 tolerated(1) benign(0.013) TCGA-43-6143-01 2 71014918 71014918 G T FIGLA Missense_Mutation p.R83S 0.25 tolerated(0.48) benign(0.234) TCGA-43-6143-01 2 71892406 71892406 G T DYSF Missense_Mutation p.Q1763H 0.29 tolerated(0.14) benign(0.016) TCGA-43-6143-01 2 74785924 74785924 G T M1AP Silent p.S504S 0.61 TCGA-43-6143-01 2 79254169 79254169 C T REG3G Nonsense_Mutation p.Q69* 0.25 TCGA-43-6143-01 2 86481814 86481814 T C REEP1 Intron 0.66 TCGA-43-6143-01 2 90199005 90199005 G T IGKV1D-12 Missense_Mutation p.A56S 0.25 tolerated(0.48) benign(0.009) TCGA-43-6143-01 3 108102447 108102447 T C MYH15 Missense_Mutation p.K1941E 0.16 tolerated(0.28) benign(0.016) TCGA-43-6143-01 3 109049619 109049619 G C DPPA4 Nonsense_Mutation p.S144* 0.48 TCGA-43-6143-01 3 109128857 109128857 G A RP11-702L6.4 RNA 0.15 TCGA-43-6143-01 3 111887848 111887849 CT - SLC9C1 Frame_Shift_Del p.S1038Yfs*4 0.34 TCGA-43-6143-01 3 112642480 112642480 T C CD200R1 3'UTR 0.39 TCGA-43-6143-01 3 122259335 122259335 G A PARP9 Silent p.G618G 0.44 TCGA-43-6143-01 3 122632069 122632069 C T SEMA5B Missense_Mutation p.G882D 0.46 deleterious(0) probably_damaging(0.978) TCGA-43-6143-01 3 125856685 125856685 C T ALDH1L1 Missense_Mutation p.D409N 0.10 tolerated_low_confidence(0.05) benign(0.009) TCGA-43-6143-01 3 134911454 134911454 T A EPHB1 Missense_Mutation p.L640Q 0.42 tolerated(0.17) benign(0.024) TCGA-43-6143-01 3 137483941 137483941 C G SOX14 Silent p.L105L 0.45 TCGA-43-6143-01 3 138014742 138014742 G A ARMC8 3'UTR 0.18 TCGA-43-6143-01 3 138724627 138724627 G C PRR23A Missense_Mutation p.P162A 0.44 tolerated(1) benign(0.018) TCGA-43-6143-01 3 142840409 142840409 G T CHST2 Missense_Mutation p.G251C 0.47 deleterious(0.01) probably_damaging(1) TCGA-43-6143-01 3 14941937 14941937 C T FGD5 Missense_Mutation p.S1061F 0.42 deleterious(0) probably_damaging(0.982) TCGA-43-6143-01 3 14941938 14941938 C T FGD5 Silent p.S1061S 0.42 TCGA-43-6143-01 3 150931768 150931768 C G P2RY14 Missense_Mutation p.G113R 0.29 deleterious(0) probably_damaging(0.998) TCGA-43-6143-01 3 158322912 158322912 T C MLF1 Missense_Mutation p.I274T 0.75 deleterious_low_confidence(0.01) benign(0.284) TCGA-43-6143-01 3 167016199 167016199 A T ZBBX Nonsense_Mutation p.Y591* 0.17 TCGA-43-6143-01 3 168830641 168830641 A G MECOM Silent p.T714T 0.20 TCGA-43-6143-01 3 169664357 169664357 G T RP11-379K17.4 RNA 0.20 TCGA-43-6143-01 3 172224300 172224300 C A TNFSF10 Silent p.G276G 0.72 TCGA-43-6143-01 3 180320683 180320683 G T TTC14 Nonsense_Mutation p.E56* 0.12 TCGA-43-6143-01 3 180320684 180320684 A T TTC14 Missense_Mutation p.E56V 0.14 tolerated(0.08) benign(0.147) TCGA-43-6143-01 3 186338466 186338466 G A AHSG Missense_Mutation p.G284D 0.13 tolerated(0.51) benign(0.023) TCGA-43-6143-01 3 190039819 190039819 G A CLDN1 Silent p.T59T 0.79 TCGA-43-6143-01 3 20082244 20082244 A G KAT2B Missense_Mutation p.E92G 0.84 tolerated(0.11) probably_damaging(0.982) TCGA-43-6143-01 3 35748492 35748492 T C ARPP21 Missense_Mutation p.L238S 0.79 deleterious(0) possibly_damaging(0.816) TCGA-43-6143-01 3 44763952 44763952 A G ZNF502 3'UTR 0.82 TCGA-43-6143-01 3 47957950 47957950 G C MAP4 Missense_Mutation p.T456S 0.88 tolerated(0.08) benign(0.132) TCGA-43-6143-01 3 50374817 50374817 G C RASSF1 Intron 0.84 TCGA-43-6143-01 3 50403720 50403720 T C CACNA2D2 Missense_Mutation p.N903S 0.78 tolerated(0.1) probably_damaging(0.948) TCGA-43-6143-01 3 97852069 97852069 C G OR5H1 Missense_Mutation p.H176Q 0.40 deleterious(0.01) possibly_damaging(0.831) TCGA-43-6143-01 4 103822205 103822205 C A SLC9B1 3'UTR 0.13 TCGA-43-6143-01 4 104511076 104511076 G T TACR3 Silent p.L387L 0.28 TCGA-43-6143-01 4 114284526 114284526 C G ANK2 Missense_Mutation p.Q3597E 0.53 probably_damaging(0.992) TCGA-43-6143-01 4 155467044 155467044 T C PLRG1 Missense_Mutation p.S146G 0.50 tolerated(0.31) benign(0) TCGA-43-6143-01 4 157732119 157732119 C A PDGFC Missense_Mutation p.R122L 0.25 deleterious(0) possibly_damaging(0.844) TCGA-43-6143-01 4 160264516 160264516 G T RAPGEF2 Missense_Mutation p.A911S 0.30 tolerated(0.37) benign(0.146) TCGA-43-6143-01 4 160274061 160274061 G T RAPGEF2 Missense_Mutation p.G1203W 0.58 deleterious_low_confidence(0) possibly_damaging(0.886) TCGA-43-6143-01 4 22438155 22438155 T C GPR125 Missense_Mutation p.R399G 0.40 deleterious(0.03) benign(0.079) TCGA-43-6143-01 4 40936686 40936686 G A APBB2 Missense_Mutation p.P380S 0.24 tolerated(0.07) probably_damaging(0.999) TCGA-43-6143-01 4 4190615 4190615 A T OTOP1 Missense_Mutation p.I585N 0.09 deleterious(0.04) probably_damaging(0.962) TCGA-43-6143-01 4 420629 420629 C A ABCA11P RNA 0.38 TCGA-43-6143-01 4 46930469 46930469 C G GABRA4 Missense_Mutation p.G480R 0.37 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-43-6143-01 4 57269556 57269556 A G PPAT Silent p.H138H 0.57 TCGA-43-6143-01 4 65147199 65147199 G A TECRL Missense_Mutation p.T304I 0.62 deleterious(0) probably_damaging(0.969) TCGA-43-6143-01 4 68385091 68385091 A G CENPC Missense_Mutation p.L154S 0.54 deleterious(0.02) possibly_damaging(0.739) TCGA-43-6143-01 4 72222840 72222840 G T SLC4A4 Silent p.R222R 0.54 TCGA-43-6143-01 4 72631146 72631146 C T GC Intron 0.44 TCGA-43-6143-01 4 7844926 7844926 C A AFAP1 Silent p.R162R 0.27 TCGA-43-6143-01 4 80954705 80954705 T A ANTXR2 Missense_Mutation p.L239F 0.70 tolerated(0.08) probably_damaging(0.948) TCGA-43-6143-01 5 101834339 101834339 G A SLCO6A1 Silent p.A70A 0.44 TCGA-43-6143-01 5 10250467 10250467 G T CCT5 Silent p.G5G 0.45 TCGA-43-6143-01 5 122751802 122751802 T A CEP120 Missense_Mutation p.I75F 0.54 deleterious(0) possibly_damaging(0.888) TCGA-43-6143-01 5 126793018 126793018 G A MEGF10 3'UTR 0.38 TCGA-43-6143-01 5 127730856 127730856 C G FBN2 Missense_Mutation p.G397A 0.40 tolerated(1) possibly_damaging(0.587) TCGA-43-6143-01 5 132161784 132161784 T A SHROOM1 Missense_Mutation p.T17S 0.42 tolerated(0.07) benign(0.433) TCGA-43-6143-01 5 140202652 140202652 C T PCDHA5 Missense_Mutation p.S431L 0.10 tolerated_low_confidence(0.06) benign(0.321) TCGA-43-6143-01 5 140215062 140215062 C A PCDHA7 Missense_Mutation p.P365Q 0.32 tolerated_low_confidence(0.28) benign(0.023) TCGA-43-6143-01 5 140772461 140772461 G T PCDHGA8 Silent p.G27G 0.51 TCGA-43-6143-01 5 141023886 141023886 A G FCHSD1 Missense_Mutation p.W588R 0.33 deleterious(0) probably_damaging(1) TCGA-43-6143-01 5 148712275 148712275 C G AFAP1L1 Missense_Mutation p.L665V 0.49 tolerated(0.07) benign(0.424) TCGA-43-6143-01 5 150322143 150322143 C A ZNF300P1 RNA 0.45 TCGA-43-6143-01 5 150897185 150897185 A C FAT2 Missense_Mutation p.L3820R 0.38 probably_damaging(0.972) TCGA-43-6143-01 5 161580143 161580143 G T GABRG2 Missense_Mutation p.M439I 0.43 tolerated(0.4) benign(0.281) TCGA-43-6143-01 5 168199835 168199835 G T SLIT3 Silent p.L470L 0.46 TCGA-43-6143-01 5 179136000 179136000 T C CANX Silent p.N156N 0.48 TCGA-43-6143-01 5 23527122 23527122 G T PRDM9 Missense_Mutation p.G642V 0.40 deleterious(0) probably_damaging(0.995) TCGA-43-6143-01 5 24535872 24535872 C G CDH10 Missense_Mutation p.A196P 0.44 deleterious(0) probably_damaging(0.995) TCGA-43-6143-01 5 31317838 31317838 C A CDH6 Silent p.T563T 0.55 TCGA-43-6143-01 5 31515295 31515295 G T DROSHA Missense_Mutation p.R364S 0.41 tolerated(0.08) probably_damaging(0.968) TCGA-43-6143-01 5 33576589 33576589 C A ADAMTS12 Missense_Mutation p.R1181I 0.43 tolerated(0.08) benign(0.017) TCGA-43-6143-01 5 33684122 33684122 C A ADAMTS12 Nonsense_Mutation p.E225* 0.58 TCGA-43-6143-01 5 3599553 3599553 C A IRX1 Missense_Mutation p.A164D 0.13 deleterious(0) probably_damaging(0.995) TCGA-43-6143-01 5 40955555 40955555 G T C7 Missense_Mutation p.G387V 0.37 deleterious(0.04) benign(0.292) TCGA-43-6143-01 5 45262353 45262353 C T HCN1 Silent p.R781R 0.47 TCGA-43-6143-01 5 79026563 79026563 G C CMYA5 Missense_Mutation p.E659Q 0.21 benign(0.054) TCGA-43-6143-01 5 90012361 90012361 G C GPR98 Missense_Mutation p.E3088Q 0.09 probably_damaging(0.932) TCGA-43-6143-01 6 112452297 112452297 C T LAMA4 Missense_Mutation p.V1281M 0.35 tolerated(0.22) benign(0.041) TCGA-43-6143-01 6 127797193 127797193 G A SOGA3 Missense_Mutation p.R660W 0.32 deleterious(0) probably_damaging(1) TCGA-43-6143-01 6 129513893 129513893 C A LAMA2 Missense_Mutation p.D559E 0.31 tolerated(0.25) benign(0.017) TCGA-43-6143-01 6 134495880 134495880 T G SGK1 Intron 0.31 TCGA-43-6143-01 6 136667017 136667017 C A MAP7 Missense_Mutation p.G761V 0.37 deleterious(0.01) unknown(0) TCGA-43-6143-01 6 146720553 146720553 C - GRM1 Frame_Shift_Del p.T794Pfs*6 0.33 TCGA-43-6143-01 6 152655215 152655215 T C SYNE1 Missense_Mutation p.D4241G 0.04 benign(0.069) TCGA-43-6143-01 6 152665306 152665306 C A SYNE1 Silent p.L4045L 0.47 TCGA-43-6143-01 6 158487553 158487553 G T SYNJ2 Missense_Mutation p.G535W 0.34 deleterious(0) probably_damaging(1) TCGA-43-6143-01 6 159651036 159651036 G - FNDC1 Splice_Site p.X457_splice 0.36 TCGA-43-6143-01 6 167728969 167728969 C T UNC93A 3'UTR 0.28 TCGA-43-6143-01 6 167754494 167754494 T A TTLL2 Missense_Mutation p.L369H 0.39 deleterious(0) probably_damaging(1) TCGA-43-6143-01 6 2623993 2623993 G T C6orf195 Missense_Mutation p.L22M 0.07 deleterious_low_confidence(0) possibly_damaging(0.82) TCGA-43-6143-01 6 31919166 31919166 G A CFB Missense_Mutation p.V1171I 0.06 tolerated(0.15) benign(0.129) TCGA-43-6143-01 6 43400473 43400473 A T ABCC10 Missense_Mutation p.H252L 0.32 tolerated(0.63) benign(0) TCGA-43-6143-01 6 43466750 43466750 C G TJAP1 Missense_Mutation p.A4G 0.52 tolerated(0.11) possibly_damaging(0.803) TCGA-43-6143-01 6 52288907 52288907 A G EFHC1 Missense_Mutation p.Q76R 0.40 tolerated(0.32) benign(0.008) TCGA-43-6143-01 6 72892190 72892190 C A RIMS1 Missense_Mutation p.A339E 0.38 tolerated(1) benign(0.004) TCGA-43-6143-01 6 79787843 79787843 G C PHIP 5'UTR 0.33 TCGA-43-6143-01 6 84904694 84904694 T G KIAA1009 Missense_Mutation p.E312A 0.53 tolerated(0.16) possibly_damaging(0.547) TCGA-43-6143-01 6 97063482 97063482 C G FHL5 Intron 0.40 TCGA-43-6143-01 7 103183274 103183274 C T RELN Missense_Mutation p.R2192Q 0.10 tolerated(0.09) probably_damaging(0.972) TCGA-43-6143-01 7 108155826 108155826 T C PNPLA8 Missense_Mutation p.H37R 0.58 tolerated_low_confidence(0.33) benign(0.002) TCGA-43-6143-01 7 117450887 117450887 C A CTTNBP2 Missense_Mutation p.A116S 0.32 tolerated(0.1) benign(0.079) TCGA-43-6143-01 7 123324492 123324492 G T WASL 3'UTR 0.32 TCGA-43-6143-01 7 123599605 123599605 T - SPAM1 Frame_Shift_Del p.L371Qfs*18 0.41 TCGA-43-6143-01 7 128845131 128845131 G T SMO Missense_Mutation p.D209Y 0.49 deleterious(0.01) probably_damaging(0.94) TCGA-43-6143-01 7 135287563 135287563 C T NUP205 Silent p.H841H 0.42 TCGA-43-6143-01 7 136700020 136700020 C A CHRM2 Silent p.T136T 0.29 TCGA-43-6143-01 7 141464890 141464890 A G TAS2R3 Missense_Mutation p.K311R 0.61 tolerated(0.12) benign(0.01) TCGA-43-6143-01 7 142161971 142161971 G C TRBV6-6 Missense_Mutation p.P102A 0.24 tolerated(0.16) benign(0.071) TCGA-43-6143-01 7 144015481 144015481 C A OR2A1 Silent p.A88A 0.12 TCGA-43-6143-01 7 146818253 146818253 G A CNTNAP2 Missense_Mutation p.E313K 0.50 tolerated(0.08) benign(0.364) TCGA-43-6143-01 7 148771626 148771626 A G ZNF786 Silent p.D50D 0.54 TCGA-43-6143-01 7 149522134 149522134 G C SSPO RNA 0.18 TCGA-43-6143-01 7 151871312 151871312 G A KMT2C Missense_Mutation p.T3093I 0.29 probably_damaging(0.98) TCGA-43-6143-01 7 23552617 23552617 G C TRA2A Missense_Mutation p.R141G 0.67 deleterious(0) probably_damaging(0.915) TCGA-43-6143-01 7 30490872 30490872 G A NOD1 Missense_Mutation p.R721W 0.49 deleterious(0) benign(0.427) TCGA-43-6143-01 7 30893027 30893027 G T FAM188B Missense_Mutation p.L543F 0.25 tolerated(0.05) benign(0.034) TCGA-43-6143-01 7 36698786 36698786 G C AOAH Silent p.L125L 0.51 TCGA-43-6143-01 7 37311438 37311438 G A ELMO1 Missense_Mutation p.P81L 0.27 deleterious(0) benign(0.283) TCGA-43-6143-01 7 38370123 38370123 C A TRGV8 Missense_Mutation p.G59W 0.27 deleterious(0) probably_damaging(0.999) TCGA-43-6143-01 7 43918685 43918685 T C URGCP Missense_Mutation p.N126S 0.47 tolerated(0.12) benign(0.053) TCGA-43-6143-01 7 44796711 44796711 C T ZMIZ2 Missense_Mutation p.R111C 0.53 deleterious(0) probably_damaging(1) TCGA-43-6143-01 7 56125742 56125742 G A CCT6A Missense_Mutation p.R224K 0.27 tolerated(0.17) benign(0.016) TCGA-43-6143-01 7 63709511 63709511 G T ZNF679 Nonsense_Mutation p.G6* 0.30 TCGA-43-6143-01 7 73483125 73483125 C G ELN 3'UTR 0.48 TCGA-43-6143-01 7 86526942 86526942 G C KIAA1324L Missense_Mutation p.C855W 0.33 deleterious(0) probably_damaging(0.999) TCGA-43-6143-01 7 87400022 87400022 G T RUNDC3B Missense_Mutation p.C269F 0.23 tolerated(0.08) possibly_damaging(0.564) TCGA-43-6143-01 7 88963673 88963673 G T ZNF804B Silent p.T459T 0.31 TCGA-43-6143-01 8 10480382 10480382 G - RP1L1 Frame_Shift_Del p.K111Rfs*46 0.54 TCGA-43-6143-01 8 113266518 113266518 A T CSMD3 Silent p.P3358P 0.36 TCGA-43-6143-01 8 131812681 131812681 G C ADCY8 Missense_Mutation p.D1017E 0.55 deleterious(0.01) probably_damaging(0.996) TCGA-43-6143-01 8 133899251 133899251 A G TG Missense_Mutation p.N545S 0.34 tolerated(0.51) possibly_damaging(0.713) TCGA-43-6143-01 8 144993616 144993616 C A PLEC Missense_Mutation p.R3595L 0.31 possibly_damaging(0.866) TCGA-43-6143-01 8 145066865 145066865 C T GRINA Silent p.L324L 0.12 TCGA-43-6143-01 8 24259568 24259568 T C ADAMDEC1 Missense_Mutation p.L428P 0.88 deleterious(0) probably_damaging(0.959) TCGA-43-6143-01 8 30699552 30699552 C T TEX15 Missense_Mutation p.D2328N 0.75 tolerated(1) benign(0) TCGA-43-6143-01 8 30704329 30704329 G C TEX15 Missense_Mutation p.S735R 0.77 deleterious(0) possibly_damaging(0.79) TCGA-43-6143-01 8 61766950 61766950 T A CHD7 Missense_Mutation p.F2268L 0.30 benign(0.437) TCGA-43-6143-01 8 77617437 77617438 GG T ZFHX4 Frame_Shift_Del p.G372Lfs*11 0.23 TCGA-43-6143-01 8 80831357 80831357 C T MRPS28 Missense_Mutation p.R141Q 0.64 deleterious(0.01) probably_damaging(0.985) TCGA-43-6143-01 8 87498812 87498812 G T RMDN1 Missense_Mutation p.S132R 0.54 tolerated(0.09) benign(0.003) TCGA-43-6143-01 8 88885715 88885715 G T DCAF4L2 Nonsense_Mutation p.S162* 0.60 TCGA-43-6143-01 8 92406549 92406549 A T SLC26A7 3'UTR 0.30 TCGA-43-6143-01 9 104324230 104324230 A G RNF20 Silent p.T896T 0.81 TCGA-43-6143-01 9 107266756 107266756 C A OR13F1 Silent p.I71I 0.77 TCGA-43-6143-01 9 119858403 119858403 C A ASTN2 Missense_Mutation p.G348V 0.81 tolerated_low_confidence(0.07) unknown(0) TCGA-43-6143-01 9 121930121 121930121 C G BRINP1 Missense_Mutation p.E509D 0.78 tolerated(1) possibly_damaging(0.899) TCGA-43-6143-01 9 123156817 123156817 G C CDK5RAP2 Missense_Mutation p.R1851G 0.77 tolerated(0.32) benign(0.135) TCGA-43-6143-01 9 130699797 130699797 C A DPM2 Silent p.T3T 0.81 TCGA-43-6143-01 9 140468735 140468735 C T DPH7 Missense_Mutation p.A189T 0.06 tolerated(0.1) benign(0.147) TCGA-43-6143-01 9 14619681 14619681 C G ZDHHC21 Splice_Site p.X208_splice 0.05 TCGA-43-6143-01 9 21865645 21865645 G T MTAP 3'UTR 0.78 TCGA-43-6143-01 9 74863310 74863310 C - GDA Intron 0.50 TCGA-43-6143-01 9 88655734 88655734 G T GOLM1 Silent p.R173R 0.91 TCGA-43-6143-01 X 102968474 102968474 G - GLRA4 Frame_Shift_Del p.R353Efs*53 0.51 TCGA-43-6143-01 X 123514841 123514841 A G TENM1 Missense_Mutation p.F2582L 0.90 tolerated(0.06) possibly_damaging(0.81) TCGA-43-6143-01 X 128599711 128599711 T G SMARCA1 Splice_Site p.X940_splice 0.85 TCGA-43-6143-01 X 150911633 150911633 C T CNGA2 Nonsense_Mutation p.Q220* 0.90 TCGA-43-6143-01 X 151124015 151124015 G A GABRE Missense_Mutation p.T321I 0.82 deleterious(0) possibly_damaging(0.874) TCGA-43-6143-01 X 17710497 17710497 C - NHS Frame_Shift_Del p.L256Ffs*28 0.51 TCGA-43-6143-01 X 29935678 29935678 T C IL1RAPL1 Silent p.D292D 0.09 TCGA-43-6143-01 X 49099760 49099760 G A CCDC22 Silent p.E182E 0.92 TCGA-43-6143-01 X 53578044 53578044 T C HUWE1 Missense_Mutation p.D3068G 0.18 possibly_damaging(0.822) TCGA-43-6143-01 X 70472485 70472485 C - ZMYM3 Frame_Shift_Del p.T208Pfs*19 0.67 TCGA-43-6647-01 10 115961240 115961240 G T TDRD1 Missense_Mutation p.A201S 0.09 tolerated(0.24) possibly_damaging(0.866) TCGA-43-6647-01 10 124396774 124396774 G C DMBT1 Silent p.T2167T 0.14 TCGA-43-6647-01 10 134910554 134910554 T A GPR123 Missense_Mutation p.V27D 0.10 deleterious(0) probably_damaging(0.999) TCGA-43-6647-01 10 135086034 135086034 C G ADAM8 Missense_Mutation p.S254T 0.08 tolerated(0.58) benign(0.004) TCGA-43-6647-01 10 22839611 22839611 C A PIP4K2A Nonsense_Mutation p.E257* 0.10 TCGA-43-6647-01 10 5541037 5541037 A G CALML5 Missense_Mutation p.M122T 0.27 deleterious(0) probably_damaging(0.986) TCGA-43-6647-01 10 55626456 55626456 T C PCDH15 Silent p.Q1221Q 0.04 TCGA-43-6647-01 10 71392747 71392747 A G C10orf35 Missense_Mutation p.M100V 0.11 tolerated(0.37) benign(0.007) TCGA-43-6647-01 10 92508999 92508999 C A HTR7 Nonsense_Mutation p.E298* 0.11 TCGA-43-6647-01 10 92509000 92509000 C A HTR7 Missense_Mutation p.K297N 0.12 tolerated(0.14) benign(0.05) TCGA-43-6647-01 10 93600414 93600414 G T TNKS2 Missense_Mutation p.V542L 0.16 tolerated(0.09) probably_damaging(0.992) TCGA-43-6647-01 11 102667499 102667499 A G MMP1 Missense_Mutation p.F174S 0.09 deleterious(0) probably_damaging(1) TCGA-43-6647-01 11 123676137 123676137 G T OR6M1 Silent p.T307T 0.12 TCGA-43-6647-01 11 123900741 123900741 C T OR10G8 Missense_Mutation p.R138C 0.13 deleterious(0.01) benign(0.032) TCGA-43-6647-01 11 17332477 17332477 G A NUCB2 Missense_Mutation p.E197K 0.11 deleterious(0.04) probably_damaging(0.998) TCGA-43-6647-01 11 18566213 18566213 T A UEVLD Silent p.S339S 0.10 TCGA-43-6647-01 11 3114761 3114761 C A OSBPL5 Nonsense_Mutation p.E648* 0.14 TCGA-43-6647-01 11 32439176 32439176 G T WT1 Silent p.S299S 0.14 TCGA-43-6647-01 11 4790235 4790235 T C OR51F1 Missense_Mutation p.M305V 0.12 tolerated(0.44) benign(0) TCGA-43-6647-01 11 4903293 4903293 G A OR51T1 Missense_Mutation p.R82Q 0.07 tolerated(0.85) benign(0.024) TCGA-43-6647-01 11 5009431 5009431 G A MMP26 5'UTR 0.15 TCGA-43-6647-01 11 5080470 5080470 T C OR52E2 Missense_Mutation p.N130D 0.11 tolerated(0.26) benign(0.023) TCGA-43-6647-01 11 56310501 56310501 G T OR5M11 Missense_Mutation p.T78N 0.13 deleterious(0) possibly_damaging(0.58) TCGA-43-6647-01 11 61732988 61732988 C G FTH1 Splice_Site p.X39_splice 0.11 TCGA-43-6647-01 11 63426637 63426637 G A ATL3 Missense_Mutation p.A45V 0.08 deleterious(0.05) possibly_damaging(0.821) TCGA-43-6647-01 11 63681598 63681598 T C RCOR2 Missense_Mutation p.K240R 0.18 tolerated(0.92) benign(0.005) TCGA-43-6647-01 11 89531714 89531714 G T TRIM49 Missense_Mutation p.H315N 0.14 tolerated(0.32) benign(0.003) TCGA-43-6647-01 11 89531715 89531715 G T TRIM49 Missense_Mutation p.D314E 0.14 deleterious(0.04) benign(0.006) TCGA-43-6647-01 12 10780269 10780269 G C STYK1 Missense_Mutation p.H230D 0.07 tolerated(0.25) probably_damaging(0.928) TCGA-43-6647-01 12 113706674 113706674 G A TPCN1 Missense_Mutation p.R291Q 0.12 deleterious(0) benign(0.241) TCGA-43-6647-01 12 113826438 113826438 G C PLBD2 3'UTR 0.16 TCGA-43-6647-01 12 130648774 130648774 G A FZD10 Silent p.T429T 0.09 TCGA-43-6647-01 12 133201572 133201572 C G POLE Silent p.L2222L 0.08 TCGA-43-6647-01 12 1943683 1943683 C T LRTM2 Silent p.S303S 0.17 TCGA-43-6647-01 12 43925895 43925895 T C ADAMTS20 Missense_Mutation p.Y186C 0.07 deleterious(0) probably_damaging(0.997) TCGA-43-6647-01 12 45567091 45567091 G A PLEKHA8P1 RNA 0.05 TCGA-43-6647-01 12 56075635 56075635 A T METTL7B Nonsense_Mutation p.K33* 0.20 TCGA-43-6647-01 12 62786902 62786902 A T USP15 Silent p.V830V 0.16 TCGA-43-6647-01 12 78400700 78400700 C T NAV3 Missense_Mutation p.S461F 0.07 deleterious(0) possibly_damaging(0.857) TCGA-43-6647-01 12 977837 977837 G T WNK1 Intron 0.09 TCGA-43-6647-01 12 9885651 9885651 G A CLECL1 Silent p.V70V 0.17 TCGA-43-6647-01 13 100617671 100617671 T C ZIC5 Missense_Mutation p.E651G 0.13 deleterious(0) possibly_damaging(0.841) TCGA-43-6647-01 13 25442751 25442751 C G RNF17 Missense_Mutation p.A1392G 0.10 tolerated(0.34) benign(0.017) TCGA-43-6647-01 14 105175017 105175017 C A INF2 Missense_Mutation p.L633I 0.05 tolerated(0.29) unknown(0) TCGA-43-6647-01 14 21052471 21052471 G A RNASE11 Missense_Mutation p.P55S 0.10 tolerated(0.18) benign(0) TCGA-43-6647-01 14 33291766 33291766 T C AKAP6 Missense_Mutation p.F1583L 0.14 tolerated_low_confidence(0.08) benign(0.006) TCGA-43-6647-01 14 59113810 59113810 C G DACT1 Silent p.L823L 0.13 TCGA-43-6647-01 14 60212638 60212638 G A RTN1 Missense_Mutation p.S268F 0.05 deleterious(0.04) benign(0.006) TCGA-43-6647-01 14 71575553 71575553 A C PCNX Silent p.S2178S 0.07 TCGA-43-6647-01 14 73989131 73989131 G T HEATR4 Missense_Mutation p.D242E 0.15 tolerated(0.06) probably_damaging(0.999) TCGA-43-6647-01 14 91252596 91252596 G A TTC7B Silent p.A66A 0.18 TCGA-43-6647-01 14 95669821 95669821 G A CLMN Missense_Mutation p.P622L 0.06 deleterious_low_confidence(0) benign(0.079) TCGA-43-6647-01 15 36989572 36989572 G T C15orf41 Missense_Mutation p.E175D 0.05 tolerated(0.17) possibly_damaging(0.765) TCGA-43-6647-01 15 52155121 52155121 G C TMOD3 Missense_Mutation p.D14H 0.07 deleterious(0) probably_damaging(0.93) TCGA-43-6647-01 15 78894314 78894314 A C CHRNA3 Missense_Mutation p.C224G 0.07 deleterious(0.03) probably_damaging(0.999) TCGA-43-6647-01 16 21211169 21211169 G C ZP2 Silent p.T575T 0.06 TCGA-43-6647-01 16 2129610 2129610 G T TSC2 Nonsense_Mutation p.E1113* 0.22 TCGA-43-6647-01 16 27448887 27448887 C A IL21R Silent p.A77A 0.12 TCGA-43-6647-01 16 4016686 4016686 G C ADCY9 Missense_Mutation p.S1051C 0.19 deleterious(0.04) possibly_damaging(0.791) TCGA-43-6647-01 16 424040 424040 G A TMEM8A Silent p.L623L 0.16 TCGA-43-6647-01 16 67702132 67702132 C T C16orf86 Nonsense_Mutation p.Q195* 0.14 TCGA-43-6647-01 16 89661838 89661838 G A CPNE7 Missense_Mutation p.A531T 0.09 deleterious(0) probably_damaging(0.973) TCGA-43-6647-01 17 10351379 10351379 G A MYH4 Missense_Mutation p.S1574F 0.18 deleterious(0.02) possibly_damaging(0.857) TCGA-43-6647-01 17 16137283 16137283 A T PIGL Splice_Site p.X79_splice 0.11 TCGA-43-6647-01 17 27805292 27805292 G A TAOK1 Missense_Mutation p.V126M 0.11 tolerated(0.12) benign(0.1) TCGA-43-6647-01 17 3595137 3595137 G A P2RX5 Intron 0.25 TCGA-43-6647-01 17 42800348 42800348 G T DBF4B Missense_Mutation p.K61N 0.16 deleterious(0.02) possibly_damaging(0.893) TCGA-43-6647-01 17 46627849 46627849 G T HOXB3 Silent p.S381S 0.07 TCGA-43-6647-01 17 74934111 74934111 G C MGAT5B Missense_Mutation p.E499D 0.06 tolerated(0.06) possibly_damaging(0.873) TCGA-43-6647-01 17 7577538 7577538 C A TP53 Missense_Mutation p.R248L 0.14 deleterious(0) probably_damaging(1) TCGA-43-6647-01 17 8047094 8047094 G A PER1 Silent p.C854C 0.12 TCGA-43-6647-01 18 48581307 48581307 C A SMAD4 Missense_Mutation p.S204Y 0.07 deleterious(0.03) benign(0.044) TCGA-43-6647-01 19 10403724 10403724 G A ICAM5 Missense_Mutation p.E423K 0.10 deleterious(0) probably_damaging(0.997) TCGA-43-6647-01 19 11453492 11453492 T A TMEM205 Nonstop_Mutation p.*190Lext*? 0.13 TCGA-43-6647-01 19 2936662 2936662 C A ZNF77 Missense_Mutation p.Q57H 0.12 tolerated(0.07) benign(0.159) TCGA-43-6647-01 19 31039443 31039443 T A ZNF536 Missense_Mutation p.Y973N 0.14 deleterious(0) probably_damaging(0.919) TCGA-43-6647-01 19 31039656 31039656 C T ZNF536 Nonsense_Mutation p.Q1044* 0.08 TCGA-43-6647-01 19 36245292 36245292 A T LIN37 Splice_Site p.X220_splice 0.26 TCGA-43-6647-01 19 36339628 36339628 A T NPHS1 Missense_Mutation p.C361S 0.09 deleterious(0) probably_damaging(1) TCGA-43-6647-01 19 36350435 36350435 C A KIRREL2 Missense_Mutation p.T192N 0.09 tolerated(0.22) possibly_damaging(0.821) TCGA-43-6647-01 19 43762202 43762202 A T PSG9 Intron 0.11 TCGA-43-6647-01 19 51535168 51535168 G T KLK12 Missense_Mutation p.H141N 0.12 tolerated(0.33) benign(0.39) TCGA-43-6647-01 19 53454512 53454512 A G ZNF816 Silent p.T172T 0.12 TCGA-43-6647-01 19 53741391 53741391 C - ZNF677 Frame_Shift_Del p.A197Hfs*48 0.13 TCGA-43-6647-01 19 53960033 53960033 A G ZNF761 RNA 0.15 TCGA-43-6647-01 19 5844073 5844073 G T FUT3 Missense_Mutation p.L260M 0.14 deleterious(0) probably_damaging(0.998) TCGA-43-6647-01 19 8993440 8993440 G A MUC16 Silent p.S13883S 0.05 TCGA-43-6647-01 1 145474029 145474029 C T ANKRD34A Missense_Mutation p.P234L 0.06 tolerated(0.58) benign(0.291) TCGA-43-6647-01 1 155057747 155057747 G T EFNA3 Missense_Mutation p.Q103H 0.21 tolerated(0.27) possibly_damaging(0.453) TCGA-43-6647-01 1 156670390 156670390 C A CRABP2 Nonsense_Mutation p.E104* 0.11 TCGA-43-6647-01 1 158226635 158226635 G C CD1A Missense_Mutation p.V222L 0.12 deleterious(0.02) benign(0.015) TCGA-43-6647-01 1 160607107 160607107 T A SLAMF1 Nonsense_Mutation p.K97* 0.15 TCGA-43-6647-01 1 176740282 176740282 T A PAPPA2 Missense_Mutation p.Y1561N 0.15 deleterious(0) possibly_damaging(0.828) TCGA-43-6647-01 1 183543638 183543638 G T NCF2 Missense_Mutation p.A162E 0.10 deleterious(0) probably_damaging(1) TCGA-43-6647-01 1 197704774 197704774 C A DENND1B Intron 0.21 TCGA-43-6647-01 1 202317984 202317984 C T PPP1R12B Missense_Mutation p.A2V 0.12 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-43-6647-01 1 237872358 237872358 G T RYR2 Missense_Mutation p.A3368S 0.10 probably_damaging(0.994) TCGA-43-6647-01 1 32148971 32148971 C T COL16A1 Splice_Site p.X794_splice 0.06 TCGA-43-6647-01 1 35370415 35370415 C A DLGAP3 Silent p.P190P 0.20 TCGA-43-6647-01 1 3756192 3756192 C A CEP104 Missense_Mutation p.A239S 0.14 deleterious(0) probably_damaging(0.987) TCGA-43-6647-01 20 17495386 17495386 C A BFSP1 Missense_Mutation p.A172S 0.04 tolerated(0.06) probably_damaging(0.924) TCGA-43-6647-01 20 30253775 30253775 C A BCL2L1 Missense_Mutation p.G227C 0.12 deleterious(0.01) possibly_damaging(0.75) TCGA-43-6647-01 20 30253776 30253776 C G BCL2L1 Silent p.L226L 0.11 TCGA-43-6647-01 20 43850507 43850507 G A SEMG2 Nonsense_Mutation p.W78* 0.07 TCGA-43-6647-01 22 22712501 22712501 T G IGLV1-47 Missense_Mutation p.F82V 0.03 deleterious_low_confidence(0) possibly_damaging(0.892) TCGA-43-6647-01 22 50988132 50988132 A G KLHDC7B Missense_Mutation p.T513A 0.05 tolerated(0.07) probably_damaging(0.94) TCGA-43-6647-01 2 101188144 101188144 G T PDCL3 Missense_Mutation p.C154F 0.18 deleterious(0) probably_damaging(0.999) TCGA-43-6647-01 2 116572486 116572486 C G DPP10 Missense_Mutation p.F610L 0.10 tolerated(0.06) benign(0.354) TCGA-43-6647-01 2 122520626 122520626 A G TSN Missense_Mutation p.Y140C 0.08 deleterious(0.04) probably_damaging(0.962) TCGA-43-6647-01 2 138414443 138414443 G T THSD7B Missense_Mutation p.V1398L 0.12 tolerated(0.46) unknown(0) TCGA-43-6647-01 2 142567923 142567923 T C LRP1B Missense_Mutation p.T44A 0.11 possibly_damaging(0.523) TCGA-43-6647-01 2 15760423 15760423 G T DDX1 Missense_Mutation p.G433V 0.20 deleterious(0) probably_damaging(1) TCGA-43-6647-01 2 165947222 165947222 G T SCN3A Missense_Mutation p.S1814Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-43-6647-01 2 167133750 167133750 A G SCN9A Silent p.L862L 0.16 TCGA-43-6647-01 2 178990747 178990747 A G RBM45 Silent p.S423S 0.17 TCGA-43-6647-01 2 179640666 179640666 T G TTN Missense_Mutation p.E1975D 0.13 TCGA-43-6647-01 2 19552084 19552084 C G OSR1 Silent p.T251T 0.11 TCGA-43-6647-01 2 218745622 218745622 C A TNS1 Missense_Mutation p.E351D 0.11 tolerated(0.29) benign(0.007) TCGA-43-6647-01 2 32842813 32842813 G A BIRC6 Missense_Mutation p.E4806K 0.11 probably_damaging(0.929) TCGA-43-6647-01 2 39509662 39509662 T C MAP4K3 Missense_Mutation p.K541E 0.08 deleterious(0.02) probably_damaging(0.991) TCGA-43-6647-01 2 61019336 61019336 C G PAPOLG Missense_Mutation p.L531V 0.19 deleterious(0.04) possibly_damaging(0.598) TCGA-43-6647-01 2 74479403 74479403 C G SLC4A5 Missense_Mutation p.G461R 0.13 tolerated(0.13) possibly_damaging(0.835) TCGA-43-6647-01 2 79363934 79363934 G T REG1P RNA 0.11 TCGA-43-6647-01 2 89326792 89326792 C A IGKV3-11 Missense_Mutation p.R74M 0.10 deleterious(0.03) probably_damaging(0.966) TCGA-43-6647-01 2 9582063 9582063 T C CPSF3 Silent p.G351G 0.12 TCGA-43-6647-01 3 123367836 123367836 A G MYLK Missense_Mutation p.I1466T 0.11 deleterious(0) benign(0.156) TCGA-43-6647-01 3 123634171 123634171 T C CCDC14 Missense_Mutation p.N732D 0.15 tolerated(0.2) possibly_damaging(0.801) TCGA-43-6647-01 3 125725882 125725882 C T SLC41A3 Intron 0.16 TCGA-43-6647-01 3 132337462 132337462 C G ACAD11 Intron 0.08 TCGA-43-6647-01 3 48621171 48621171 G A COL7A1 Missense_Mutation p.P1441S 0.10 unknown(0) TCGA-43-6647-01 3 48621172 48621172 G A COL7A1 Silent p.P1440P 0.10 TCGA-43-6647-01 3 64617583 64617583 C G ADAMTS9 Missense_Mutation p.V732L 0.16 deleterious(0) benign(0.115) TCGA-43-6647-01 3 97454854 97454854 G A EPHA6 Nonsense_Mutation p.W1007* 0.09 TCGA-43-6647-01 3 97852280 97852280 T A OR5H1 Missense_Mutation p.S247T 0.05 deleterious(0) possibly_damaging(0.517) TCGA-43-6647-01 4 104030059 104030059 C G CENPE Missense_Mutation p.E2638Q 0.09 possibly_damaging(0.827) TCGA-43-6647-01 4 104068579 104068579 C A CENPE Silent p.T1356T 0.12 TCGA-43-6647-01 4 122254094 122254094 G C QRFPR Missense_Mutation p.L227V 0.10 deleterious(0) possibly_damaging(0.598) TCGA-43-6647-01 4 126372108 126372108 A G FAT4 Missense_Mutation p.K3313E 0.13 benign(0.031) TCGA-43-6647-01 4 141320055 141320055 C T CLGN Nonsense_Mutation p.W278* 0.04 TCGA-43-6647-01 4 148876465 148876465 A G ARHGAP10 Splice_Site p.X464_splice 0.05 TCGA-43-6647-01 4 38777259 38777259 G T TLR10 5'UTR 0.14 TCGA-43-6647-01 4 38798666 38798666 G A TLR1 Missense_Mutation p.T596I 0.14 tolerated(0.5) benign(0.003) TCGA-43-6647-01 5 135390435 135390435 G C TGFBI Missense_Mutation p.R432T 0.13 tolerated(0.09) benign(0.151) TCGA-43-6647-01 5 140221414 140221414 T G PCDHA8 Missense_Mutation p.Y170D 0.07 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-43-6647-01 5 180376262 180376262 G A BTNL8 Missense_Mutation p.A287T 0.25 tolerated(0.14) benign(0.079) TCGA-43-6647-01 5 58285714 58285714 T A PDE4D Silent p.P440P 0.13 TCGA-43-6647-01 6 116289818 116289818 G T FRK Nonsense_Mutation p.S184* 0.15 TCGA-43-6647-01 6 130530728 130530728 G C SAMD3 Missense_Mutation p.P99A 0.15 tolerated_low_confidence(0.19) benign(0.002) TCGA-43-6647-01 6 134498864 134498864 G - SGK1 Intron 0.15 TCGA-43-6647-01 6 146625878 146625878 C G GRM1 Missense_Mutation p.T361S 0.13 tolerated(0.18) benign(0.088) TCGA-43-6647-01 6 165711504 165711504 G A C6orf118 Silent p.L341L 0.12 TCGA-43-6647-01 6 26505289 26505289 A T BTN1A1 Silent p.T188T 0.07 TCGA-43-6647-01 6 29395018 29395018 G T OR11A1 Missense_Mutation p.P134Q 0.07 tolerated(0.12) benign(0.434) TCGA-43-6647-01 6 30955950 30955950 C T MUC21 Silent p.S560S 0.13 TCGA-43-6647-01 6 38690769 38690769 C A DNAH8 5'Flank 0.11 TCGA-43-6647-01 6 44226793 44226793 C A NFKBIE 3'UTR 0.40 TCGA-43-6647-01 6 49754268 49754268 T A PGK2 Silent p.I211I 0.07 TCGA-43-6647-01 6 90571877 90571877 A G CASP8AP2 RNA 0.12 TCGA-43-6647-01 7 101882815 101882815 C A CUX1 Missense_Mutation p.Q1291K 0.19 deleterious(0) unknown(0) TCGA-43-6647-01 7 107692543 107692543 C T LAMB4 Silent p.A1305A 0.17 TCGA-43-6647-01 7 122759214 122759214 G C SLC13A1 Missense_Mutation p.S478C 0.18 tolerated(1) benign(0.052) TCGA-43-6647-01 7 6038907 6038907 C A PMS2 Splice_Site p.X180_splice 0.07 TCGA-43-6647-01 7 72683349 72683349 C A GTF2IRD2P1 RNA 0.13 TCGA-43-6647-01 7 75051114 75051114 G A POM121C Silent p.T807T 0.07 TCGA-43-6647-01 7 81714198 81714198 T G CACNA2D1 Missense_Mutation p.E182A 0.10 tolerated(0.08) probably_damaging(0.999) TCGA-43-6647-01 7 86415818 86415818 G C GRM3 Missense_Mutation p.R237P 0.11 tolerated(0.27) probably_damaging(0.992) TCGA-43-6647-01 7 87072693 87072693 C T ABCB4 Missense_Mutation p.C433Y 0.18 deleterious(0) possibly_damaging(0.759) TCGA-43-6647-01 7 93623548 93623548 C A BET1 Silent p.L117L 0.15 TCGA-43-6647-01 8 106815541 106815541 G T ZFPM2 Silent p.S1077S 0.14 TCGA-43-6647-01 8 145745252 145745252 G A LRRC14 Missense_Mutation p.R48H 0.11 tolerated(0.13) benign(0.017) TCGA-43-6647-01 8 29194783 29194783 G T DUSP4 Missense_Mutation p.S315R 0.04 deleterious(0.04) probably_damaging(0.998) TCGA-43-6647-01 8 81412419 81412419 A G ZBTB10 Missense_Mutation p.T555A 0.09 tolerated(0.29) benign(0.003) TCGA-43-6647-01 9 101904938 101904938 C - TGFBR1 Frame_Shift_Del p.T309Rfs*26 0.10 TCGA-43-6647-01 9 107266678 107266678 G T OR13F1 Silent p.L45L 0.15 TCGA-43-6647-01 9 140110455 140110455 T C NDOR1 Missense_Mutation p.F514L 0.05 deleterious(0) probably_damaging(0.997) TCGA-43-6647-01 9 35750883 35750883 G T RGP1 Silent p.R128R 0.21 TCGA-43-6647-01 X 10176267 10176267 G T CLCN4 Silent p.G342G 0.15 TCGA-43-6647-01 X 102004380 102004380 C G BHLHB9 Missense_Mutation p.P153A 0.15 tolerated(0.34) benign(0.006) TCGA-43-6647-01 X 117819735 117819735 C A DOCK11 Silent p.R2063R 0.10 TCGA-43-6647-01 X 123205067 123205067 G T STAG2 Missense_Mutation p.M809I 0.11 tolerated(0.39) benign(0) TCGA-43-6647-01 X 125299535 125299535 C G DCAF12L2 Missense_Mutation p.V125L 0.20 tolerated(0.07) possibly_damaging(0.743) TCGA-43-6647-01 X 128649887 128649887 A T SMARCA1 Missense_Mutation p.F171L 0.13 tolerated(0.11) probably_damaging(0.999) TCGA-43-6647-01 X 129799638 129799638 G T ENOX2 Missense_Mutation p.S360R 0.12 deleterious(0.04) possibly_damaging(0.475) TCGA-43-6647-01 X 130217853 130217853 G T ARHGAP36 Silent p.V155V 0.21 TCGA-43-6647-01 X 146271247 146271247 G T MIR513C RNA 0.08 TCGA-43-6647-01 X 152482623 152482623 C T MAGEA1 Missense_Mutation p.E130K 0.12 tolerated(0.93) possibly_damaging(0.546) TCGA-43-6647-01 X 153695768 153695768 C T PLXNA3 Missense_Mutation p.P1132L 0.36 tolerated(0.11) possibly_damaging(0.902) TCGA-43-6647-01 X 154448554 154448554 T C VBP1 Missense_Mutation p.M63T 0.26 deleterious(0) possibly_damaging(0.771) TCGA-43-6647-01 X 154741382 154741382 A T TMLHE Missense_Mutation p.L237Q 0.20 tolerated(0.05) possibly_damaging(0.876) TCGA-43-6647-01 X 27999274 27999274 G T DCAF8L1 Missense_Mutation p.L60M 0.10 tolerated_low_confidence(0.22) benign(0.367) TCGA-43-6647-01 X 30260968 30260968 G T MAGEB4 Missense_Mutation p.G239V 0.14 deleterious(0) probably_damaging(1) TCGA-43-6647-01 X 32360339 32360339 C G DMD Missense_Mutation p.E1934Q 0.16 possibly_damaging(0.607) TCGA-43-6647-01 X 48047126 48047126 C G SSX5 Missense_Mutation p.E211Q 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-43-6647-01 X 48825921 48825921 G T KCND1 Missense_Mutation p.A253D 0.09 deleterious(0) probably_damaging(0.995) TCGA-43-6647-01 X 50053412 50053412 C T CCNB3 Missense_Mutation p.S748F 0.12 deleterious(0.03) probably_damaging(0.962) TCGA-43-6647-01 X 50133404 50133404 C A DGKK RNA 0.14 TCGA-43-6647-01 X 50133405 50133405 C G DGKK Intron 0.13 TCGA-43-6647-01 X 50376730 50376730 G T SHROOM4 Missense_Mutation p.S781R 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-43-6647-01 X 54838617 54838617 G T MAGED2 Missense_Mutation p.D340Y 0.09 deleterious(0.01) possibly_damaging(0.893) TCGA-43-6647-01 X 55650240 55650240 G A FOXR2 Silent p.L32L 0.11 TCGA-43-6647-01 X 73963303 73963303 T C KIAA2022 Silent p.Q363Q 0.18 TCGA-43-6647-01 X 79946652 79946652 C T BRWD3 Missense_Mutation p.V1168I 0.14 deleterious(0.02) benign(0.326) TCGA-43-6647-01 X 83724491 83724491 G A HDX Silent p.I80I 0.19 TCGA-43-6770-01 10 102766372 102766372 G C LZTS2 Missense_Mutation p.R486P 0.50 deleterious(0.03) probably_damaging(0.958) TCGA-43-6770-01 10 134579331 134579331 G C INPP5A Missense_Mutation p.D320H 0.04 deleterious(0.02) possibly_damaging(0.835) TCGA-43-6770-01 10 21805147 21805147 C T SKIDA1 Silent p.P535P 0.32 TCGA-43-6770-01 10 27702399 27702399 G T PTCHD3 Missense_Mutation p.L261I 0.39 tolerated(0.4) benign(0.036) TCGA-43-6770-01 10 30315900 30315900 C T KIAA1462 Silent p.Q1059Q 0.05 TCGA-43-6770-01 10 37508513 37508513 A C ANKRD30A Silent p.T1235T 0.14 TCGA-43-6770-01 10 5948139 5948139 C T FBXO18 Silent p.S150S 0.12 TCGA-43-6770-01 11 108042941 108042941 G A NPAT Missense_Mutation p.P924S 0.08 tolerated(0.12) probably_damaging(0.999) TCGA-43-6770-01 11 113105856 113105856 G T NCAM1 Missense_Mutation p.A648S 0.36 tolerated(0.71) benign(0.022) TCGA-43-6770-01 11 17153551 17153551 G C PIK3C2A Missense_Mutation p.H715D 0.13 deleterious(0) possibly_damaging(0.86) TCGA-43-6770-01 11 2608873 2608873 G T KCNQ1 Missense_Mutation p.R401L 0.26 tolerated(0.12) benign(0.173) TCGA-43-6770-01 11 40136309 40136309 T C LRRC4C Missense_Mutation p.I512V 0.30 tolerated(0.82) benign(0) TCGA-43-6770-01 11 5364468 5364468 A G OR51B5 Missense_Mutation p.F96S 0.06 deleterious(0.01) possibly_damaging(0.786) TCGA-43-6770-01 11 5462308 5462308 A G OR51I1 Missense_Mutation p.M146T 0.38 tolerated(0.2) benign(0.006) TCGA-43-6770-01 11 55432843 55432843 G A OR4C6 Silent p.L67L 0.19 TCGA-43-6770-01 11 55433068 55433068 G A OR4C6 Missense_Mutation p.M142I 0.36 deleterious_low_confidence(0) benign(0.213) TCGA-43-6770-01 11 55433069 55433069 G T OR4C6 Missense_Mutation p.V143L 0.35 tolerated_low_confidence(0.73) benign(0.014) TCGA-43-6770-01 11 5758258 5758258 T A OR56B1 Missense_Mutation p.L171H 0.33 deleterious(0) probably_damaging(0.996) TCGA-43-6770-01 11 5776678 5776678 G A OR52N4 Silent p.R236R 0.37 TCGA-43-6770-01 11 58034971 58034971 C T OR10W1 Silent p.P120P 0.18 TCGA-43-6770-01 11 61906420 61906432 ACACCCAACCCGA - INCENP Frame_Shift_Del p.T412Sfs*42 0.12 TCGA-43-6770-01 11 65123817 65123817 T A TIGD3 Missense_Mutation p.L180M 0.16 tolerated(0.18) probably_damaging(0.998) TCGA-43-6770-01 11 67396482 67396482 C G NUDT8 Missense_Mutation p.V79L 0.06 tolerated(0.1) benign(0.392) TCGA-43-6770-01 11 7079556 7079556 T C NLRP14 Silent p.S836S 0.36 TCGA-43-6770-01 11 76893063 76893063 G T MYO7A Nonsense_Mutation p.E991* 0.14 TCGA-43-6770-01 11 83497769 83497769 G C DLG2 Missense_Mutation p.Q597E 0.10 deleterious(0.01) benign(0.319) TCGA-43-6770-01 11 9861056 9861056 T C SBF2 Silent p.S1148S 0.33 TCGA-43-6770-01 12 12496330 12496340 CAGATGATGAG - MANSC1 5'UTR 0.29 TCGA-43-6770-01 12 13716959 13716959 C T GRIN2B Silent p.G1071G 0.33 TCGA-43-6770-01 12 15095561 15095561 C A ARHGDIB Silent p.L167L 0.20 TCGA-43-6770-01 12 15095562 15095562 A G ARHGDIB Missense_Mutation p.L167P 0.20 deleterious(0) probably_damaging(0.983) TCGA-43-6770-01 12 49412616 49412616 C T PRKAG1 5'Flank 0.50 TCGA-43-6770-01 12 49442517 49442524 CTCCTCCT - KMT2D Frame_Shift_Del p.K1350Rfs*5 0.27 TCGA-43-6770-01 12 56075807 56075807 C A METTL7B Missense_Mutation p.P90Q 0.25 tolerated(0.05) benign(0.214) TCGA-43-6770-01 12 56094858 56094858 C T ITGA7 Silent p.V165V 0.26 TCGA-43-6770-01 12 6172175 6172175 C G VWF Missense_Mutation p.S493T 0.17 tolerated(0.55) benign(0.014) TCGA-43-6770-01 12 6756072 6756072 C T ACRBP Silent p.L50L 0.39 TCGA-43-6770-01 12 96300166 96300166 T C CCDC38 Missense_Mutation p.E123G 0.17 deleterious(0) probably_damaging(0.986) TCGA-43-6770-01 13 100181844 100181844 C T TM9SF2 Missense_Mutation p.H153Y 0.23 deleterious(0.01) probably_damaging(1) TCGA-43-6770-01 13 101763490 101763490 G A NALCN Silent p.I760I 0.05 TCGA-43-6770-01 13 114203835 114203835 G A TMCO3 Silent p.E672E 0.18 TCGA-43-6770-01 13 78218430 78218430 G T SCEL 3'UTR 0.35 TCGA-43-6770-01 13 96513097 96513097 C A UGGT2 Missense_Mutation p.D1229Y 0.42 deleterious(0.01) probably_damaging(0.99) TCGA-43-6770-01 14 106235847 106235847 C G IGHG3 Missense_Mutation p.E287D 0.22 deleterious(0.01) probably_damaging(0.926) TCGA-43-6770-01 14 20612092 20612092 G T OR4N5 Missense_Mutation p.L66F 0.06 deleterious(0) probably_damaging(0.999) TCGA-43-6770-01 14 20824553 20824553 G C PARP2 Missense_Mutation p.D410H 0.09 deleterious(0.01) possibly_damaging(0.566) TCGA-43-6770-01 14 21500193 21500193 G C TPPP2 Missense_Mutation p.S157T 0.14 tolerated(0.17) benign(0.009) TCGA-43-6770-01 14 24838689 24838689 C A NFATC4 Intron 0.09 TCGA-43-6770-01 14 42361139 42361139 C A LRFN5 Missense_Mutation p.T691K 0.43 tolerated_low_confidence(0.23) benign(0.012) TCGA-43-6770-01 14 55531382 55531382 G A MAPK1IP1L 3'UTR 0.40 TCGA-43-6770-01 15 34649392 34649392 G C NUTM1 Missense_Mutation p.R1033S 0.31 tolerated(0.62) benign(0.037) TCGA-43-6770-01 15 43692396 43692396 G C TUBGCP4 Missense_Mutation p.D525H 0.20 deleterious(0) probably_damaging(0.934) TCGA-43-6770-01 15 45426062 45426062 G T DUOX1 Missense_Mutation p.G20V 0.26 tolerated(0.06) benign(0.003) TCGA-43-6770-01 15 48413351 48413351 C A SLC24A5 Missense_Mutation p.P37Q 0.26 tolerated(0.12) benign(0.045) TCGA-43-6770-01 15 48717600 48717600 G T FBN1 Silent p.G2473G 0.05 TCGA-43-6770-01 15 54630593 54630593 T C UNC13C Missense_Mutation p.M1540T 0.27 tolerated_low_confidence(0.5) benign(0.001) TCGA-43-6770-01 15 63084986 63084986 G T TLN2 Missense_Mutation p.K1961N 0.13 tolerated(0.12) benign(0.407) TCGA-43-6770-01 15 65158077 65158077 G T PLEKHO2 Missense_Mutation p.S488I 0.22 deleterious(0) probably_damaging(0.998) TCGA-43-6770-01 15 75656349 75656349 T C MAN2C1 Missense_Mutation p.I261V 0.24 deleterious(0.01) probably_damaging(0.911) TCGA-43-6770-01 15 77771649 77771649 G T HMG20A Missense_Mutation p.D346Y 0.43 deleterious(0) probably_damaging(0.96) TCGA-43-6770-01 15 83331597 83331597 G T AP3B2 Nonsense_Mutation p.Y875* 0.09 TCGA-43-6770-01 15 86124590 86124590 A G AKAP13 Silent p.L1097L 0.12 TCGA-43-6770-01 15 89198686 89198686 C T ISG20 Missense_Mutation p.A157V 0.15 deleterious(0) probably_damaging(0.988) TCGA-43-6770-01 15 91524812 91524812 C G PRC1 Missense_Mutation p.E197Q 0.16 deleterious(0.04) probably_damaging(0.974) TCGA-43-6770-01 16 14956939 14956960 AGTTGTCCTGTCATCTCAAGAC - NOMO1 Frame_Shift_Del p.V431Rfs*29 0.22 TCGA-43-6770-01 16 2987296 2987296 G T FLYWCH1 Missense_Mutation p.R562L 0.44 deleterious(0.04) probably_damaging(0.999) TCGA-43-6770-01 16 48256530 48256530 T A ABCC11 Silent p.V252V 0.26 TCGA-43-6770-01 16 77323300 77323300 G T ADAMTS18 Silent p.V1137V 0.27 TCGA-43-6770-01 16 81209275 81209275 G C PKD1L2 Missense_Mutation p.L96V 0.15 deleterious(0.03) possibly_damaging(0.61) TCGA-43-6770-01 17 10543520 10543520 G A MYH3 Silent p.V825V 0.31 TCGA-43-6770-01 17 18565295 18565295 T G ZNF286B Silent p.S508S 0.06 TCGA-43-6770-01 17 18638695 18638695 G C TRIM16L Missense_Mutation p.K323N 0.39 tolerated(0.09) possibly_damaging(0.9) TCGA-43-6770-01 17 33767706 33767706 T A SLFN13 Missense_Mutation p.I868F 0.35 tolerated(0.05) probably_damaging(0.974) TCGA-43-6770-01 17 35487070 35487070 G T ACACA Silent p.T1918T 0.39 TCGA-43-6770-01 17 43347853 43347853 C - MAP3K14-AS1 3'Flank 0.10 TCGA-43-6770-01 17 5009196 5009196 A G ZNF232 Missense_Mutation p.C420R 0.65 deleterious(0) possibly_damaging(0.479) TCGA-43-6770-01 17 5323090 5323090 G A RPAIN 5'Flank 0.73 TCGA-43-6770-01 17 56247203 56247203 C T OR4D2 Missense_Mutation p.L63F 0.44 deleterious(0.01) benign(0.167) TCGA-43-6770-01 17 60753804 60753804 G T MRC2 Silent p.T582T 0.41 TCGA-43-6770-01 17 60753805 60753805 G T MRC2 Missense_Mutation p.A583S 0.41 deleterious(0.02) possibly_damaging(0.74) TCGA-43-6770-01 17 61957965 61957965 C T GH2 Missense_Mutation p.G208E 0.27 tolerated_low_confidence(1) benign(0) TCGA-43-6770-01 17 62855639 62855639 T A LRRC37A3 Missense_Mutation p.D1542V 0.40 deleterious(0) probably_damaging(0.999) TCGA-43-6770-01 17 65134182 65134182 C A HELZ Missense_Mutation p.V940L 0.37 tolerated(0.11) possibly_damaging(0.593) TCGA-43-6770-01 17 72519625 72519625 G T CD300LB Intron 0.22 TCGA-43-6770-01 17 72846477 72846477 G A GRIN2C Silent p.C453C 0.45 TCGA-43-6770-01 17 72955976 72955976 C T HID1 Silent p.E336E 0.50 TCGA-43-6770-01 17 7578235 7578235 T C TP53 Missense_Mutation p.Y205C 0.58 deleterious(0) probably_damaging(0.99) TCGA-43-6770-01 17 78073416 78073416 C A CCDC40 Missense_Mutation p.Q1091K 0.05 tolerated(0.28) benign(0.015) TCGA-43-6770-01 17 79164546 79164546 C A AZI1 Missense_Mutation p.E1000D 0.13 deleterious(0.01) possibly_damaging(0.473) TCGA-43-6770-01 18 14542655 14542655 G T POTEC Missense_Mutation p.T164K 0.27 tolerated(0.27) probably_damaging(0.993) TCGA-43-6770-01 18 23866131 23866131 G A TAF4B Missense_Mutation p.A420T 0.28 tolerated(0.53) benign(0.034) TCGA-43-6770-01 18 3215167 3215167 T C MYOM1 Missense_Mutation p.N19D 0.30 tolerated_low_confidence(0.67) benign(0.001) TCGA-43-6770-01 18 40503645 40503645 T A RIT2 Silent p.S106S 0.30 TCGA-43-6770-01 18 43314309 43314309 G T SLC14A1 Missense_Mutation p.D194Y 0.28 deleterious(0.02) benign(0.132) TCGA-43-6770-01 18 46284498 46284498 G A CTIF Missense_Mutation p.A265T 0.26 tolerated_low_confidence(0.08) benign(0.005) TCGA-43-6770-01 18 56246255 56246255 G A ALPK2 Missense_Mutation p.H585Y 0.40 tolerated(0.08) benign(0.022) TCGA-43-6770-01 18 6943182 6943182 G C LAMA1 Missense_Mutation p.P3022A 0.30 deleterious(0) possibly_damaging(0.897) TCGA-43-6770-01 18 8784453 8784453 G T SOGA2 Missense_Mutation p.R448L 0.35 deleterious(0.01) benign(0.028) TCGA-43-6770-01 19 10158116 10158116 C T C3P1 RNA 0.24 TCGA-43-6770-01 19 10662585 10662585 T C ATG4D Missense_Mutation p.C327R 0.35 deleterious(0.03) benign(0.068) TCGA-43-6770-01 19 16632349 16632349 G C CHERP Missense_Mutation p.H699Q 0.28 deleterious(0.01) probably_damaging(0.916) TCGA-43-6770-01 19 16942392 16942413 CCTCGGATATAGAATAGACATT - SIN3B Frame_Shift_Del p.L106Pfs*6 0.29 TCGA-43-6770-01 19 17438618 17438618 G T ANO8 Silent p.P766P 0.28 TCGA-43-6770-01 19 21300974 21300974 C T ZNF714 Nonsense_Mutation p.Q502* 0.32 TCGA-43-6770-01 19 21300975 21300975 A G ZNF714 Missense_Mutation p.Q502R 0.33 deleterious(0.02) benign(0.035) TCGA-43-6770-01 19 21366002 21366002 G C ZNF431 Missense_Mutation p.R299P 0.24 tolerated(0.1) possibly_damaging(0.858) TCGA-43-6770-01 19 21720399 21720399 G A ZNF429 Missense_Mutation p.G515D 0.24 tolerated(0.08) probably_damaging(0.999) TCGA-43-6770-01 19 3278102 3278102 C T CELF5 Silent p.T199T 0.34 TCGA-43-6770-01 19 37905296 37905307 ATGCTCATCAAC - ZNF569 In_Frame_Del p.V85_H88del 0.14 TCGA-43-6770-01 19 4323157 4323157 C A FSD1 Missense_Mutation p.A405D 0.35 deleterious(0) probably_damaging(0.966) TCGA-43-6770-01 19 49631295 49631295 A G PPFIA3 Silent p.T55T 0.52 TCGA-43-6770-01 19 56369695 56369695 C G NLRP4 Missense_Mutation p.C312W 0.06 tolerated(0.18) probably_damaging(0.932) TCGA-43-6770-01 19 8808441 8808441 T C ACTL9 Missense_Mutation p.Y204C 0.38 tolerated(0.14) benign(0.037) TCGA-43-6770-01 19 9064008 9064008 G A MUC16 Missense_Mutation p.P7813L 0.27 unknown(0) TCGA-43-6770-01 1 100154844 100154844 C T PALMD Missense_Mutation p.P343L 0.38 tolerated(0.28) benign(0.001) TCGA-43-6770-01 1 114319901 114319901 A G RSBN1 Missense_Mutation p.M530T 0.30 deleterious(0) benign(0.196) TCGA-43-6770-01 1 117131648 117131648 A T IGSF3 Missense_Mutation p.V723D 0.30 deleterious(0) probably_damaging(0.948) TCGA-43-6770-01 1 145562900 145562900 C T ANKRD35 Missense_Mutation p.A863V 0.21 tolerated(0.21) probably_damaging(0.99) TCGA-43-6770-01 1 152283513 152283513 G A FLG Silent p.S1283S 0.31 TCGA-43-6770-01 1 154492811 154492811 A G TDRD10 Missense_Mutation p.N58S 0.31 tolerated(0.49) benign(0.001) TCGA-43-6770-01 1 154544002 154544002 C T CHRNB2 Missense_Mutation p.L235F 0.28 deleterious(0) probably_damaging(0.999) TCGA-43-6770-01 1 156675204 156675204 C T CRABP2 Missense_Mutation p.R12Q 0.28 deleterious(0.04) benign(0.003) TCGA-43-6770-01 1 158943530 158943530 A T PYHIN1 Missense_Mutation p.T485S 0.30 benign(0.292) TCGA-43-6770-01 1 16775693 16775693 C T NECAP2 Silent p.I162I 0.33 TCGA-43-6770-01 1 176760601 176760601 A T PAPPA2 Missense_Mutation p.E1668V 0.22 tolerated(0.05) benign(0.02) TCGA-43-6770-01 1 186278006 186278006 C G PRG4 Missense_Mutation p.P1052R 0.04 unknown(0) TCGA-43-6770-01 1 197403847 197403847 G T CRB1 Missense_Mutation p.A952S 0.28 deleterious(0.05) benign(0.345) TCGA-43-6770-01 1 201196154 201196154 A G IGFN1 Missense_Mutation p.H3644R 0.29 benign(0.051) TCGA-43-6770-01 1 216420069 216420069 C G USH2A Missense_Mutation p.L889F 0.40 possibly_damaging(0.781) TCGA-43-6770-01 1 227935399 227935399 A G SNAP47 Missense_Mutation p.K33E 0.35 tolerated_low_confidence(0.3) benign(0.017) TCGA-43-6770-01 1 22913107 22913107 C T EPHA8 Missense_Mutation p.P320S 0.43 tolerated(0.13) benign(0.122) TCGA-43-6770-01 1 29609186 29609186 A T PTPRU Splice_Site p.X623_splice 0.17 TCGA-43-6770-01 1 70904911 70904911 A T CTH 3'UTR 0.27 TCGA-43-6770-01 1 85564330 85564330 G A WDR63 Missense_Mutation p.D490N 0.44 tolerated(0.11) benign(0.098) TCGA-43-6770-01 20 48524716 48524716 C A SPATA2 Missense_Mutation p.W104C 0.23 deleterious(0) probably_damaging(1) TCGA-43-6770-01 20 48746194 48746194 C G TMEM189-UBE2V1 Missense_Mutation p.D123H 0.05 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-43-6770-01 20 58559798 58559798 A C CDH26 Missense_Mutation p.S216R 0.49 tolerated(0.36) benign(0.016) TCGA-43-6770-01 21 15591904 15591904 G C RBM11 Silent p.V39V 0.26 TCGA-43-6770-01 21 31798087 31798087 C A KRTAP13-3 Silent p.L48L 0.29 TCGA-43-6770-01 21 41414584 41414584 G T DSCAM Missense_Mutation p.S1800R 0.22 deleterious(0) probably_damaging(0.999) TCGA-43-6770-01 21 46021683 46021683 C T KRTAP10-7 3'UTR 0.31 TCGA-43-6770-01 21 46047883 46047883 C A KRTAP10-9 Silent p.A265A 0.32 TCGA-43-6770-01 22 19119491 19119491 G T TSSK2 Missense_Mutation p.Q193H 0.08 tolerated(0.17) benign(0.021) TCGA-43-6770-01 22 30144534 30144534 G C ZMAT5 5'UTR 0.55 TCGA-43-6770-01 22 30766590 30766590 G A CCDC157 Silent p.Q232Q 0.06 TCGA-43-6770-01 22 30980537 30980537 C T PES1 Missense_Mutation p.R179H 0.61 deleterious(0.04) possibly_damaging(0.616) TCGA-43-6770-01 2 11053295 11053295 T A KCNF1 Missense_Mutation p.L248Q 0.28 tolerated(0.11) probably_damaging(0.951) TCGA-43-6770-01 2 131520797 131520797 C T AMER3 Silent p.D384D 0.42 TCGA-43-6770-01 2 133531461 133531461 C G NCKAP5 Missense_Mutation p.E1686Q 0.06 tolerated(0.41) benign(0.012) TCGA-43-6770-01 2 141274521 141274521 A G LRP1B Silent p.L2696L 0.06 TCGA-43-6770-01 2 141533667 141533667 C A LRP1B Missense_Mutation p.G1834C 0.30 probably_damaging(0.965) TCGA-43-6770-01 2 172305295 172305295 G T DCAF17 Missense_Mutation p.E142D 0.04 deleterious(0.01) benign(0.289) TCGA-43-6770-01 2 176948394 176948394 G T EVX2 Silent p.L37L 0.36 TCGA-43-6770-01 2 179498596 179498596 C A TTN Missense_Mutation p.Q14210H 0.28 TCGA-43-6770-01 2 179593626 179593626 A G TTN Missense_Mutation p.L6380S 0.30 TCGA-43-6770-01 2 179611814 179611814 G A TTN Intron 0.30 TCGA-43-6770-01 2 179635302 179635302 C G TTN Missense_Mutation p.Q2739H 0.30 TCGA-43-6770-01 2 183066211 183066211 C G PDE1A Silent p.L376L 0.35 TCGA-43-6770-01 2 189876590 189876590 A C COL3A1 3'UTR 0.29 TCGA-43-6770-01 2 191792155 191792155 A T GLS Missense_Mutation p.S458C 0.26 deleterious(0) probably_damaging(0.999) TCGA-43-6770-01 2 21252821 21252821 C T APOB Silent p.Q473Q 0.16 TCGA-43-6770-01 2 217293404 217293404 G C SMARCAL1 Missense_Mutation p.K411N 0.28 tolerated(0.11) benign(0.06) TCGA-43-6770-01 2 231326018 231326018 T C SP100 Missense_Mutation p.S288P 0.18 tolerated(0.13) possibly_damaging(0.504) TCGA-43-6770-01 2 234372821 234372821 G C DGKD Silent p.P1066P 0.23 TCGA-43-6770-01 2 24118806 24118806 T A ATAD2B Missense_Mutation p.H84L 0.41 deleterious_low_confidence(0.03) benign(0.036) TCGA-43-6770-01 2 27600640 27600640 G T ZNF513 Missense_Mutation p.H466Q 0.26 deleterious(0) possibly_damaging(0.537) TCGA-43-6770-01 2 28766132 28766132 G T PLB1 Missense_Mutation p.R311S 0.29 tolerated(0.49) benign(0.001) TCGA-43-6770-01 2 29295418 29295418 C - C2orf71 Frame_Shift_Del p.R571Gfs*11 0.16 TCGA-43-6770-01 2 32703790 32703790 C G BIRC6 Missense_Mutation p.L2386V 0.17 probably_damaging(0.978) TCGA-43-6770-01 2 54080255 54080255 T C GPR75 3'UTR 0.27 TCGA-43-6770-01 2 88991249 88991249 C G RPIA Nonsense_Mutation p.Y11* 0.35 TCGA-43-6770-01 3 105264056 105264056 C G ALCAM Intron 0.34 TCGA-43-6770-01 3 119301046 119301046 G T ADPRH Silent p.L10L 0.23 TCGA-43-6770-01 3 119301047 119301047 A C ADPRH Missense_Mutation p.S11R 0.22 deleterious(0) probably_damaging(1) TCGA-43-6770-01 3 126224833 126224833 A G UROC1 Silent p.G208G 0.04 TCGA-43-6770-01 3 13671366 13671366 G A FBLN2 Silent p.T963T 0.45 TCGA-43-6770-01 3 146173087 146173087 A T PLSCR2 Missense_Mutation p.V160D 0.26 deleterious(0) probably_damaging(0.997) TCGA-43-6770-01 3 152058195 152058195 A G TMEM14E 3'UTR 0.41 TCGA-43-6770-01 3 154146767 154146767 G C GPR149 Missense_Mutation p.T213S 0.34 deleterious(0.03) possibly_damaging(0.472) TCGA-43-6770-01 3 155493633 155493633 G C C3orf33 Nonsense_Mutation p.S17* 0.03 TCGA-43-6770-01 3 158371155 158371155 C A GFM1 Missense_Mutation p.S299R 0.35 deleterious(0) probably_damaging(0.982) TCGA-43-6770-01 3 186915549 186915549 G C RTP1 Missense_Mutation p.Q82H 0.07 deleterious(0) probably_damaging(0.98) TCGA-43-6770-01 3 196754711 196754711 G T MFI2 Missense_Mutation p.S40R 0.07 tolerated(0.45) possibly_damaging(0.478) TCGA-43-6770-01 3 48612666 48612666 C A COL7A1 Nonsense_Mutation p.G2064* 0.40 TCGA-43-6770-01 3 49044195 49044195 A G P4HTM Missense_Mutation p.N516S 0.41 deleterious(0) possibly_damaging(0.897) TCGA-43-6770-01 3 50231296 50231296 T G GNAT1 Missense_Mutation p.F187C 0.41 tolerated(0.08) benign(0.013) TCGA-43-6770-01 4 113506862 113506862 C A C4orf21 Silent p.L1312L 0.11 TCGA-43-6770-01 4 128725243 128725243 G T HSPA4L Splice_Site p.X329_splice 0.21 TCGA-43-6770-01 4 13544131 13544131 T C NKX3-2 Missense_Mutation p.E163G 0.08 tolerated(0.07) benign(0.156) TCGA-43-6770-01 4 154523864 154523864 C T KIAA0922 Missense_Mutation p.T875M 0.06 deleterious(0.04) probably_damaging(1) TCGA-43-6770-01 4 155155906 155155906 T G DCHS2 Missense_Mutation p.N2845H 0.34 deleterious(0.03) benign(0.008) TCGA-43-6770-01 4 164393737 164393737 C A TKTL2 Missense_Mutation p.G384C 0.21 deleterious(0.02) probably_damaging(0.992) TCGA-43-6770-01 4 164394531 164394531 A G TKTL2 Missense_Mutation p.V119A 0.26 deleterious(0.04) probably_damaging(0.947) TCGA-43-6770-01 4 20715163 20715163 G T PACRGL Splice_Site p.X203_splice 0.30 TCGA-43-6770-01 4 65175582 65175582 C G TECRL Missense_Mutation p.V207L 0.31 tolerated(0.07) benign(0.006) TCGA-43-6770-01 4 90169836 90169836 A G GPRIN3 Missense_Mutation p.C476R 0.07 deleterious(0.04) benign(0) TCGA-43-6770-01 5 102295636 102295636 G T PAM Missense_Mutation p.K321N 0.47 deleterious(0.01) probably_damaging(0.991) TCGA-43-6770-01 5 146777324 146777324 C T DPYSL3 Missense_Mutation p.D570N 0.71 tolerated(0.25) possibly_damaging(0.537) TCGA-43-6770-01 5 156936311 156936311 G T ADAM19 Silent p.I301I 0.52 TCGA-43-6770-01 5 176011425 176011425 G A CDHR2 Missense_Mutation p.V715M 0.52 tolerated(0.1) benign(0.16) TCGA-43-6770-01 5 42695031 42695031 A G GHR Silent p.E93E 0.28 TCGA-43-6770-01 5 50137846 50137846 G A PARP8 Missense_Mutation p.G837R 0.18 tolerated(0.2) benign(0.025) TCGA-43-6770-01 5 50137849 50137849 G C PARP8 Missense_Mutation p.G838R 0.19 tolerated(0.22) benign(0.007) TCGA-43-6770-01 5 82649140 82649140 G C XRCC4 3'UTR 0.33 TCGA-43-6770-01 5 87493533 87493533 G A TMEM161B Missense_Mutation p.A380V 0.08 tolerated(0.17) benign(0.228) TCGA-43-6770-01 6 109954161 109954161 G A AK9 Missense_Mutation p.L407F 0.32 deleterious(0) probably_damaging(0.973) TCGA-43-6770-01 6 129609117 129609117 T C LAMA2 Missense_Mutation p.I888T 0.29 tolerated(0.12) possibly_damaging(0.719) TCGA-43-6770-01 6 129833550 129833550 A C LAMA2 Missense_Mutation p.E2967A 0.05 deleterious(0) possibly_damaging(0.878) TCGA-43-6770-01 6 148855979 148855979 G A SASH1 Silent p.R679R 0.08 TCGA-43-6770-01 6 154360850 154360850 C G OPRM1 Missense_Mutation p.S150R 0.51 deleterious(0.03) benign(0.007) TCGA-43-6770-01 6 160553345 160553345 C G SLC22A1 Nonsense_Mutation p.Y199* 0.04 TCGA-43-6770-01 6 163483206 163483206 C T PACRG Missense_Mutation p.H106Y 0.28 deleterious(0.01) probably_damaging(0.972) TCGA-43-6770-01 6 170068228 170068228 T G WDR27 Missense_Mutation p.K170N 0.42 tolerated_low_confidence(0.52) benign(0) TCGA-43-6770-01 6 26225532 26225532 C G HIST1H3E Silent p.R50R 0.06 TCGA-43-6770-01 6 2954829 2954829 C A SERPINB6 Nonsense_Mutation p.E143* 0.08 TCGA-43-6770-01 6 33048736 33048736 G T HLA-DPB1 Intron 0.32 TCGA-43-6770-01 6 44216403 44216403 G C HSP90AB1 Missense_Mutation p.E13Q 0.04 deleterious(0.02) probably_damaging(0.985) TCGA-43-6770-01 6 47763175 47763175 C A OPN5 Missense_Mutation p.P211Q 0.26 deleterious(0) probably_damaging(1) TCGA-43-6770-01 6 72967967 72967967 A T RIMS1 Silent p.P970P 0.26 TCGA-43-6770-01 7 100696357 100696357 G T MUC17 Silent p.G4398G 0.16 TCGA-43-6770-01 7 103824482 103824482 C A ORC5 Splice_Site p.X245_splice 0.04 TCGA-43-6770-01 7 1474126 1474126 C G MICALL2 3'UTR 0.27 TCGA-43-6770-01 7 149515170 149515170 C T SSPO RNA 0.41 TCGA-43-6770-01 7 150720201 150720201 C G ATG9B Missense_Mutation p.R251T 0.14 tolerated(0.26) benign(0.005) TCGA-43-6770-01 7 155301727 155301727 G A CNPY1 Silent p.N2N 0.42 TCGA-43-6770-01 7 23221613 23221613 C - NUPL2 5'UTR 0.48 TCGA-43-6770-01 7 25264627 25264627 G A NPVF 3'UTR 0.46 TCGA-43-6770-01 7 3991545 3991545 C G SDK1 Missense_Mutation p.F381L 0.37 deleterious(0.04) benign(0) TCGA-43-6770-01 7 57200012 57200012 G T ZNF479 Missense_Mutation p.P7H 0.24 tolerated_low_confidence(0.16) possibly_damaging(0.862) TCGA-43-6770-01 7 64530847 64530847 A C SNORA22 3'Flank 0.30 TCGA-43-6770-01 7 92146842 92146842 A C PEX1 Silent p.T329T 0.13 TCGA-43-6770-01 7 99757893 99757893 G A GAL3ST4 Silent p.F373F 0.04 TCGA-43-6770-01 8 126049491 126049494 TGTA - KIAA0196 Frame_Shift_Del p.Y1056Tfs*28 0.32 TCGA-43-6770-01 8 144891120 144891120 G A SCRIB Missense_Mutation p.P592S 0.40 possibly_damaging(0.731) TCGA-43-6770-01 8 145135352 145135352 A G EXOSC4 Missense_Mutation p.I196V 0.18 tolerated(0.46) benign(0.005) TCGA-43-6770-01 8 42552621 42552621 C - CHRNB3 5'UTR 0.31 TCGA-43-6770-01 8 52321350 52321350 G A PXDNL Missense_Mutation p.A945V 0.14 tolerated(0.18) benign(0.108) TCGA-43-6770-01 8 57358515 57358515 A G PENK 5'UTR 0.35 TCGA-43-6770-01 8 59502566 59502566 A G NSMAF Missense_Mutation p.V727A 0.32 deleterious(0) possibly_damaging(0.492) TCGA-43-6770-01 8 68204219 68204233 TCTTGGGATATATGA - ARFGEF1 In_Frame_Del p.D255_Q259del 0.29 TCGA-43-6770-01 8 69069635 69069635 C T PREX2 Missense_Mutation p.S1437L 0.22 deleterious(0) benign(0.386) TCGA-43-6770-01 8 71071841 71071841 C A NCOA2 Missense_Mutation p.L341F 0.29 deleterious(0) probably_damaging(0.999) TCGA-43-6770-01 8 72184094 72184094 C G EYA1 Missense_Mutation p.D289H 0.04 deleterious(0.02) possibly_damaging(0.798) TCGA-43-6770-01 8 72938268 72938268 C G TRPA1 Missense_Mutation p.W993S 0.33 deleterious(0.01) possibly_damaging(0.535) TCGA-43-6770-01 8 77764838 77764838 C A ZFHX4 Missense_Mutation p.S1894Y 0.62 benign(0.04) TCGA-43-6770-01 8 77765936 77765936 C A ZFHX4 Missense_Mutation p.S2260Y 0.46 probably_damaging(0.979) TCGA-43-6770-01 8 77765937 77765937 C A ZFHX4 Silent p.S2260S 0.46 TCGA-43-6770-01 9 101611482 101611482 T A GALNT12 3'UTR 0.29 TCGA-43-6770-01 9 104433328 104433328 T C GRIN3A Missense_Mutation p.I456V 0.27 tolerated(0.34) benign(0.004) TCGA-43-6770-01 9 105766997 105766997 A - CYLC2 Frame_Shift_Del p.R68Efs*14 0.25 TCGA-43-6770-01 9 114886687 114886687 G A SUSD1 Missense_Mutation p.R246W 0.39 deleterious(0.02) probably_damaging(0.912) TCGA-43-6770-01 9 123632136 123632136 G A PHF19 Missense_Mutation p.A151V 0.11 deleterious(0.05) possibly_damaging(0.467) TCGA-43-6770-01 9 138683697 138683697 C A KCNT1 Missense_Mutation p.P1186H 0.18 deleterious(0.05) benign(0.159) TCGA-43-6770-01 9 95219619 95219626 CGAAATGT - ASPN Frame_Shift_Del p.T363Lfs*22 0.11 TCGA-43-6770-01 9 96326821 96326821 A G FAM120A Silent p.%3D 0.41 TCGA-43-6770-01 9 97912344 97912344 G C FANCC Missense_Mutation p.L183V 0.18 tolerated(0.41) probably_damaging(0.989) TCGA-43-6770-01 9 99581208 99581208 T C ZNF782 Missense_Mutation p.Y366C 0.05 tolerated(0.07) benign(0) TCGA-43-6770-01 X 100242485 100242485 C T ARL13A Missense_Mutation p.T198I 0.06 tolerated(0.09) benign(0.071) TCGA-43-6770-01 X 100656659 100656659 C - GLA Frame_Shift_Del p.D170Mfs*22 0.21 TCGA-43-6770-01 X 104464650 104464650 G T TEX13A Missense_Mutation p.D144E 0.39 tolerated(0.09) benign(0.443) TCGA-43-6770-01 X 105153033 105153033 C G NRK Missense_Mutation p.A468G 0.42 deleterious_low_confidence(0.01) benign(0.439) TCGA-43-6770-01 X 105168796 105168796 G T NRK Nonsense_Mutation p.G1030* 0.52 TCGA-43-6770-01 X 107979218 107979218 C A IRS4 Silent p.R119R 0.30 TCGA-43-6770-01 X 117743289 117743289 T A DOCK11 Missense_Mutation p.L976M 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-43-6770-01 X 118717208 118717208 G T UBE2A Missense_Mutation p.R150L 0.17 tolerated(0.62) benign(0) TCGA-43-6770-01 X 131762512 131762512 T C HS6ST2 Silent p.K559K 0.24 TCGA-43-6770-01 X 135432363 135432363 T A GPR112 Silent p.S2166S 0.24 TCGA-43-6770-01 X 140995353 140995353 C A MAGEC1 Silent p.L721L 0.21 TCGA-43-6770-01 X 142967587 142967587 C G UBE2NL Missense_Mutation p.Q129E 0.23 tolerated(0.66) benign(0.003) TCGA-43-6770-01 X 14936842 14936842 C G MOSPD2 Missense_Mutation p.L453V 0.30 tolerated(0.38) benign(0.08) TCGA-43-6770-01 X 152128349 152128349 A T ZNF185 Missense_Mutation p.T537S 0.13 tolerated(0.55) benign(0.02) TCGA-43-6770-01 X 15605982 15605982 C T ACE2 Splice_Site p.X233_splice 0.09 TCGA-43-6770-01 X 18963197 18963197 T C PHKA2 Missense_Mutation p.K206R 0.28 deleterious(0) benign(0.33) TCGA-43-6770-01 X 24544369 24544369 A G PDK3 Missense_Mutation p.H243R 0.30 deleterious(0) possibly_damaging(0.866) TCGA-43-6770-01 X 24766501 24766501 G A POLA1 Missense_Mutation p.R916Q 0.22 deleterious(0.01) probably_damaging(0.938) TCGA-43-6770-01 X 32366646 32366646 C T DMD Splice_Site p.X1776_splice 0.39 TCGA-43-6770-01 X 34149282 34149282 C A FAM47A Missense_Mutation p.G372W 0.31 deleterious(0.04) possibly_damaging(0.82) TCGA-43-6770-01 X 34961596 34961596 C A FAM47B Silent p.P216P 0.29 TCGA-43-6770-01 X 40513614 40513614 A T MED14 Splice_Site p.X1431_splice 0.16 TCGA-43-6770-01 X 53592131 53592131 C G HUWE1 Missense_Mutation p.Q2259H 0.20 benign(0.132) TCGA-43-6770-01 X 54780108 54780108 G T ITIH6 Missense_Mutation p.Q1110K 0.27 tolerated(0.15) benign(0.005) TCGA-43-6770-01 X 54950182 54950182 G A TRO Missense_Mutation p.R406Q 0.24 tolerated(0.17) unknown(0) TCGA-43-6770-01 X 70323957 70323957 C A CXorf65 Missense_Mutation p.K144N 0.35 deleterious(0.02) possibly_damaging(0.89) TCGA-43-6770-01 X 70469495 70469495 T G ZMYM3 Missense_Mutation p.H429P 0.08 deleterious(0) probably_damaging(0.999) TCGA-43-6770-01 X 73812546 73812546 C A RLIM Missense_Mutation p.V202F 0.14 tolerated(0.12) unknown(0) TCGA-43-6770-01 X 74288858 74288858 A G ABCB7 Missense_Mutation p.V549A 0.33 deleterious(0) benign(0.138) TCGA-43-6770-01 X 75003354 75003354 T - MAGEE2 Frame_Shift_Del p.K511Nfs*16 0.33 TCGA-43-6771-01 10 100401681 100401681 G T HPSE2 Silent p.R341R 0.19 TCGA-43-6771-01 10 112044826 112044826 G A MXI1 3'UTR 0.25 TCGA-43-6771-01 10 115451765 115451765 G - CASP7 Frame_Shift_Del p.W12Cfs*84 0.24 TCGA-43-6771-01 10 118389530 118389530 G T PNLIPRP2 Silent p.V218V 0.18 TCGA-43-6771-01 10 124708325 124708325 A C C10orf88 Missense_Mutation p.V163G 0.15 deleterious(0) probably_damaging(0.997) TCGA-43-6771-01 10 128973730 128973730 C G FAM196A Silent p.P310P 0.25 TCGA-43-6771-01 10 17157565 17157565 G A CUBN Nonsense_Mutation p.Q209* 0.21 TCGA-43-6771-01 10 44052638 44052638 C A ZNF239 Missense_Mutation p.G297V 0.19 deleterious(0) probably_damaging(0.997) TCGA-43-6771-01 10 45941193 45941193 C A ALOX5 3'UTR 0.38 TCGA-43-6771-01 10 70748591 70748591 G T KIAA1279 Translation_Start_Site p.M1? 0.25 tolerated_low_confidence(0.06) benign(0.017) TCGA-43-6771-01 10 74690336 74690336 G A OIT3 Missense_Mutation p.D470N 0.22 tolerated(0.16) probably_damaging(0.914) TCGA-43-6771-01 11 1021225 1021225 G A MUC6 Silent p.C1193C 0.27 TCGA-43-6771-01 11 102584065 102584065 C A MMP8 3'UTR 0.45 TCGA-43-6771-01 11 104879648 104879648 G A CASP5 Nonsense_Mutation p.Q36* 0.44 TCGA-43-6771-01 11 120345304 120345304 A G ARHGEF12 Silent p.E1023E 0.43 TCGA-43-6771-01 11 14316390 14316390 T A RRAS2 Missense_Mutation p.Q72L 0.75 deleterious(0) benign(0.361) TCGA-43-6771-01 11 3249654 3249654 G A MRGPRE Missense_Mutation p.L125F 0.30 tolerated(0.18) benign(0.05) TCGA-43-6771-01 11 40137376 40137376 C T LRRC4C Missense_Mutation p.R156Q 0.42 deleterious(0.04) probably_damaging(0.98) TCGA-43-6771-01 11 51515501 51515501 G T OR4C46 Missense_Mutation p.V74F 0.15 deleterious_low_confidence(0.01) benign(0.159) TCGA-43-6771-01 11 5221315 5221315 A T OR51V1 Missense_Mutation p.Y206N 0.19 deleterious(0.02) benign(0.285) TCGA-43-6771-01 11 5264474 5264474 G A HBG1 3'Flank 0.20 TCGA-43-6771-01 11 55419064 55419064 G T OR4S2 Nonsense_Mutation p.E229* 0.57 TCGA-43-6771-01 11 55904844 55904844 C A OR8J3 Silent p.V117V 0.38 TCGA-43-6771-01 11 56230220 56230220 C A OR5M9 Missense_Mutation p.V220L 0.32 tolerated(1) benign(0.004) TCGA-43-6771-01 11 56409790 56409790 C A OR5AP2 Missense_Mutation p.M42I 0.25 tolerated(0.35) benign(0.001) TCGA-43-6771-01 11 56510447 56510447 A G OR9G4 Missense_Mutation p.Y281H 0.26 tolerated(0.28) probably_damaging(0.971) TCGA-43-6771-01 11 5878717 5878717 C A OR52E8 Missense_Mutation p.L72F 0.20 deleterious(0.01) probably_damaging(1) TCGA-43-6771-01 11 58978773 58978773 G T MPEG1 Missense_Mutation p.S522R 0.43 tolerated(0.34) benign(0.067) TCGA-43-6771-01 11 59997532 59997532 A C MS4A4E 5'Flank 0.17 TCGA-43-6771-01 11 6631392 6631392 G T ILK Missense_Mutation p.K364N 0.31 deleterious(0.01) benign(0.169) TCGA-43-6771-01 11 6631393 6631393 C A ILK Missense_Mutation p.P365T 0.31 deleterious(0.04) benign(0.089) TCGA-43-6771-01 11 68201211 68201211 A T LRP5 Missense_Mutation p.Q1302L 0.69 deleterious(0.02) probably_damaging(0.924) TCGA-43-6771-01 11 70189989 70189989 A T PPFIA1 Missense_Mutation p.K641I 0.19 deleterious(0.03) benign(0.164) TCGA-43-6771-01 11 7960135 7960135 T C OR10A3 Silent p.L311L 0.14 TCGA-43-6771-01 12 100433449 100433449 C A UHRF1BP1L Missense_Mutation p.Q1400H 0.34 deleterious(0.05) probably_damaging(0.999) TCGA-43-6771-01 12 104413419 104413419 A G GLT8D2 Missense_Mutation p.L3P 0.28 deleterious_low_confidence(0.04) possibly_damaging(0.783) TCGA-43-6771-01 12 109283249 109283249 C T DAO Missense_Mutation p.P105L 0.14 deleterious(0) probably_damaging(0.975) TCGA-43-6771-01 12 109858783 109858783 C A MYO1H Intron 0.15 TCGA-43-6771-01 12 111336867 111336867 A G CCDC63 Missense_Mutation p.K427R 0.12 tolerated(0.13) benign(0.019) TCGA-43-6771-01 12 116429696 116429696 G T MED13L Silent p.P1021P 0.06 TCGA-43-6771-01 12 117768451 117768451 C T NOS1 Missense_Mutation p.G142S 0.22 tolerated_low_confidence(1) benign(0) TCGA-43-6771-01 12 123099563 123099563 G A KNTC1 Missense_Mutation p.C1968Y 0.28 deleterious(0) probably_damaging(0.991) TCGA-43-6771-01 12 124839417 124839417 C A NCOR2 Missense_Mutation p.M1150I 0.25 benign(0.108) TCGA-43-6771-01 12 124839419 124839419 T A NCOR2 Missense_Mutation p.M1150L 0.25 benign(0.257) TCGA-43-6771-01 12 131280555 131280555 G C STX2 3'UTR 0.14 TCGA-43-6771-01 12 21207473 21207473 G T SLCO1B7 Missense_Mutation p.A482S 0.33 tolerated(0.41) benign(0.004) TCGA-43-6771-01 12 33579085 33579085 G T SYT10 Missense_Mutation p.T166K 0.30 deleterious(0.02) benign(0.345) TCGA-43-6771-01 12 53776695 53776695 A T SP1 Missense_Mutation p.T322S 0.13 tolerated(0.32) possibly_damaging(0.636) TCGA-43-6771-01 12 54903516 54903516 G T NCKAP1L Silent p.L190L 0.14 TCGA-43-6771-01 12 58017834 58017834 C A SLC26A10 Missense_Mutation p.Q394K 0.17 tolerated(0.19) probably_damaging(0.994) TCGA-43-6771-01 12 6132840 6132840 G T VWF Silent p.A1112A 0.25 TCGA-43-6771-01 12 6924028 6924028 G T CD4 Missense_Mutation p.R159S 0.10 tolerated(0.8) benign(0.011) TCGA-43-6771-01 12 70048997 70048997 G T BEST3 Missense_Mutation p.T566K 0.35 deleterious_low_confidence(0.03) benign(0.081) TCGA-43-6771-01 12 9349036 9349036 C T PZP Splice_Site p.X328_splice 0.29 TCGA-43-6771-01 13 103460094 103460094 A T BIVM-ERCC5 Silent p.S131S 0.15 TCGA-43-6771-01 13 20426215 20426215 C A ZMYM5 Missense_Mutation p.G36C 0.18 deleterious_low_confidence(0) possibly_damaging(0.867) TCGA-43-6771-01 13 72014825 72014825 C A DACH1 Splice_Site p.X697_splice 0.21 TCGA-43-6771-01 13 84454735 84454735 G T SLITRK1 Missense_Mutation p.S303Y 0.19 tolerated(0.39) benign(0.089) TCGA-43-6771-01 13 88327856 88327856 C A SLITRK5 Silent p.I71I 0.26 TCGA-43-6771-01 13 95095825 95095825 C T DCT Missense_Mutation p.A449T 0.14 tolerated(0.4) benign(0.082) TCGA-43-6771-01 14 105419189 105419189 C T AHNAK2 Missense_Mutation p.V867M 0.20 possibly_damaging(0.86) TCGA-43-6771-01 14 106306971 106306971 G T IGHD Silent p.P286P 0.38 TCGA-43-6771-01 14 20344449 20344449 C - OR4K2 Frame_Shift_Del p.M9Cfs*37 0.14 TCGA-43-6771-01 14 23242900 23242900 G T SLC7A7 Silent p.V485V 0.20 TCGA-43-6771-01 14 23889128 23889128 C A MYH7 Nonsense_Mutation p.E1218* 0.12 TCGA-43-6771-01 14 55636119 55636119 G T DLGAP5 Missense_Mutation p.Q516K 0.30 deleterious(0) probably_damaging(0.999) TCGA-43-6771-01 14 60976059 60976059 C A SIX6 5'UTR 0.22 TCGA-43-6771-01 14 95058452 95058452 C A SERPINA5 Missense_Mutation p.T366K 0.28 deleterious(0) possibly_damaging(0.689) TCGA-43-6771-01 14 96909082 96909082 G T AK7 Nonsense_Mutation p.E236* 0.18 TCGA-43-6771-01 15 29393969 29393969 T C APBA2 Silent p.H502H 0.28 TCGA-43-6771-01 15 48777639 48777639 G C FBN1 Missense_Mutation p.S1215C 0.20 probably_damaging(0.944) TCGA-43-6771-01 15 74559079 74559079 C T CCDC33 Missense_Mutation p.P127L 0.15 deleterious(0) probably_damaging(0.958) TCGA-43-6771-01 15 80889689 80889689 C T ARNT2 3'UTR 0.18 TCGA-43-6771-01 15 81436089 81436089 C T C15orf26 Silent p.S188S 0.22 TCGA-43-6771-01 15 86259125 86259125 C T AKAP13 Silent p.S1906S 0.21 TCGA-43-6771-01 16 1035307 1035307 A G SOX8 Missense_Mutation p.N421S 0.32 tolerated(0.08) benign(0.018) TCGA-43-6771-01 16 3544718 3544718 A T C16orf90 Missense_Mutation p.L69Q 0.32 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-43-6771-01 16 50666270 50666270 C G NKD1 Missense_Mutation p.H258Q 0.23 deleterious(0) probably_damaging(0.998) TCGA-43-6771-01 16 57762439 57762439 C A CCDC135 Missense_Mutation p.S778R 0.25 deleterious(0.04) possibly_damaging(0.71) TCGA-43-6771-01 16 70219866 70219866 C T CLEC18C Silent p.Y430Y 0.19 TCGA-43-6771-01 16 84270969 84270969 G T KCNG4 Nonsense_Mutation p.Y41* 0.23 TCGA-43-6771-01 17 10600876 10600876 T G SCO1 5'UTR 0.19 TCGA-43-6771-01 17 15983977 15983977 G A NCOR1 Missense_Mutation p.P1081L 0.12 probably_damaging(0.999) TCGA-43-6771-01 17 20805904 20805904 C T RP11-344E13.3 RNA 0.34 TCGA-43-6771-01 17 27861296 27861296 G A TAOK1 Missense_Mutation p.R841Q 0.15 deleterious(0) possibly_damaging(0.744) TCGA-43-6771-01 17 2966415 2966415 G T OR1D5 Missense_Mutation p.L163M 0.16 tolerated(1) benign(0.006) TCGA-43-6771-01 17 35913588 35913588 T A SYNRG Missense_Mutation p.D746V 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-43-6771-01 17 39596681 39596681 C T KRT38 Splice_Site p.X164_splice 0.21 TCGA-43-6771-01 17 40011341 40011341 C G KLHL11 Missense_Mutation p.V260L 0.20 deleterious(0) possibly_damaging(0.748) TCGA-43-6771-01 17 42800368 42800368 G C DBF4B Missense_Mutation p.G68A 0.21 tolerated(0.23) benign(0.093) TCGA-43-6771-01 17 56536130 56536130 A G HSF5 Silent p.P573P 0.24 TCGA-43-6771-01 17 59485479 59485479 C T TBX2 Missense_Mutation p.A584V 0.29 deleterious(0) probably_damaging(0.968) TCGA-43-6771-01 17 60469293 60469293 G T EFCAB3 Missense_Mutation p.V140F 0.19 deleterious(0) possibly_damaging(0.767) TCGA-43-6771-01 17 7690250 7690250 G C DNAH2 Missense_Mutation p.G2168R 0.24 probably_damaging(0.997) TCGA-43-6771-01 18 28742632 28742632 A T DSC1 5'UTR 0.16 TCGA-43-6771-01 18 28986104 28986104 G T DSG4 Silent p.L567L 0.17 TCGA-43-6771-01 18 33263543 33263543 G T GALNT1 Missense_Mutation p.A224S 0.12 tolerated(0.53) benign(0.025) TCGA-43-6771-01 18 65178549 65178549 C A DSEL Missense_Mutation p.L1109F 0.28 deleterious(0) probably_damaging(0.951) TCGA-43-6771-01 18 9257705 9257705 G T ANKRD12 Missense_Mutation p.Q1480H 0.15 deleterious_low_confidence(0.02) benign(0.012) TCGA-43-6771-01 18 9257706 9257706 G T ANKRD12 Missense_Mutation p.D1481Y 0.15 deleterious_low_confidence(0) possibly_damaging(0.886) TCGA-43-6771-01 19 15569435 15569435 G T RASAL3 Missense_Mutation p.L232M 0.28 deleterious(0) probably_damaging(0.999) TCGA-43-6771-01 19 17608160 17608160 G A SLC27A1 Missense_Mutation p.G365R 0.18 deleterious(0.01) probably_damaging(0.948) TCGA-43-6771-01 19 20829130 20829130 A G ZNF626 Missense_Mutation p.Y29H 0.29 deleterious(0) probably_damaging(0.999) TCGA-43-6771-01 19 31039987 31039987 G T ZNF536 Missense_Mutation p.S1154I 0.25 tolerated_low_confidence(0.12) benign(0.1) TCGA-43-6771-01 19 36853129 36853129 T A ZFP14 Silent p.T7T 0.19 TCGA-43-6771-01 19 38959968 38959968 G T RYR1 Nonsense_Mutation p.G1194* 0.16 TCGA-43-6771-01 19 41201934 41201934 C A ADCK4 Missense_Mutation p.S390I 0.19 deleterious(0) possibly_damaging(0.824) TCGA-43-6771-01 19 42847671 42847671 C T MEGF8 Missense_Mutation p.A519V 0.11 tolerated(0.42) benign(0.031) TCGA-43-6771-01 19 43763083 43763083 G T PSG9 Missense_Mutation p.T305K 0.25 deleterious(0) possibly_damaging(0.83) TCGA-43-6771-01 19 44097332 44097332 C T IRGQ Missense_Mutation p.D240N 0.17 tolerated(1) benign(0.011) TCGA-43-6771-01 19 50413004 50413004 C A NUP62 Missense_Mutation p.A21S 0.21 tolerated(0.07) unknown(0) TCGA-43-6771-01 19 51983848 51983848 C A CEACAM18 Missense_Mutation p.T166N 0.22 tolerated(0.08) benign(0.269) TCGA-43-6771-01 19 52131184 52131184 C G SIGLEC5 Missense_Mutation p.E300D 0.21 tolerated(0.17) possibly_damaging(0.766) TCGA-43-6771-01 19 56244704 56244704 C T NLRP9 Missense_Mutation p.V165M 0.26 deleterious(0.01) possibly_damaging(0.669) TCGA-43-6771-01 19 57327108 57327108 C T PEG3 Missense_Mutation p.R901H 0.19 tolerated(0.83) benign(0.001) TCGA-43-6771-01 1 11193214 11193214 C A MTOR Missense_Mutation p.G1763C 0.23 deleterious(0) probably_damaging(1) TCGA-43-6771-01 1 11193215 11193215 C G MTOR Missense_Mutation p.Q1762H 0.23 tolerated(0.37) benign(0.022) TCGA-43-6771-01 1 152484143 152484143 C T LCE5A Missense_Mutation p.P45S 0.21 tolerated_low_confidence(0.87) unknown(0) TCGA-43-6771-01 1 154543919 154543919 C T CHRNB2 Missense_Mutation p.A207V 0.17 tolerated(0.27) possibly_damaging(0.883) TCGA-43-6771-01 1 154965044 154965044 A G FLAD1 Intron 0.37 TCGA-43-6771-01 1 156639957 156639957 G T NES Silent p.G1341G 0.19 TCGA-43-6771-01 1 160054285 160054285 C A KCNJ9 Silent p.G155G 0.36 TCGA-43-6771-01 1 17418973 17418973 G T PADI2 Silent p.P195P 0.15 TCGA-43-6771-01 1 17418974 17418974 G T PADI2 Missense_Mutation p.P195H 0.15 deleterious(0.03) probably_damaging(1) TCGA-43-6771-01 1 190195413 190195413 G T BRINP3 Missense_Mutation p.R254S 0.15 tolerated(0.25) benign(0.002) TCGA-43-6771-01 1 19181214 19181214 C T TAS1R2 Silent p.T250T 0.17 TCGA-43-6771-01 1 203017755 203017755 G T PPFIA4 5'Flank 0.53 TCGA-43-6771-01 1 215848895 215848895 G - USH2A Frame_Shift_Del p.R4120Afs*11 0.19 TCGA-43-6771-01 1 220809369 220809369 G C MARK1 Splice_Site p.X490_splice 0.12 TCGA-43-6771-01 1 22927417 22927417 C A EPHA8 Nonsense_Mutation p.Y855* 0.27 TCGA-43-6771-01 1 237801714 237801714 G T RYR2 Missense_Mutation p.G2284C 0.19 possibly_damaging(0.722) TCGA-43-6771-01 1 24113866 24113866 A T PITHD1 Nonstop_Mutation p.*212Yext*13 0.20 TCGA-43-6771-01 1 24202075 24202075 A T CNR2 Missense_Mutation p.N11K 0.15 deleterious(0.04) benign(0.156) TCGA-43-6771-01 1 248262831 248262831 C T OR2L13 Missense_Mutation p.P52S 0.27 tolerated(0.71) benign(0.001) TCGA-43-6771-01 1 248344136 248344136 C T OR2M2 Silent p.P283P 0.22 TCGA-43-6771-01 1 248551173 248551173 C A OR2T6 Silent p.G88G 0.29 TCGA-43-6771-01 1 248570307 248570307 C A OR2T1 Missense_Mutation p.L338I 0.17 deleterious(0.05) benign(0.109) TCGA-43-6771-01 1 248651974 248651974 G T OR2T5 Missense_Mutation p.A29S 0.16 tolerated(0.43) benign(0.033) TCGA-43-6771-01 1 28601391 28601391 G T SESN2 Missense_Mutation p.G359V 0.19 tolerated(1) benign(0.017) TCGA-43-6771-01 1 28601393 28601393 G T SESN2 Missense_Mutation p.G360W 0.21 deleterious(0) probably_damaging(1) TCGA-43-6771-01 1 36820883 36820883 T A STK40 Missense_Mutation p.K165M 0.28 deleterious(0.01) probably_damaging(0.982) TCGA-43-6771-01 1 45796905 45796905 C A MUTYH Missense_Mutation p.W472C 0.21 deleterious(0) probably_damaging(1) TCGA-43-6771-01 1 52703701 52703701 A T ZFYVE9 Missense_Mutation p.E204D 0.23 tolerated_low_confidence(0.13) benign(0.007) TCGA-43-6771-01 1 53458967 53458967 G T SCP2 Intron 0.19 TCGA-43-6771-01 1 6188991 6188991 C A CHD5 Missense_Mutation p.G1176C 0.19 deleterious(0) probably_damaging(1) TCGA-43-6771-01 1 82447526 82447526 C G LPHN2 Missense_Mutation p.L1033V 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-43-6771-01 1 84544037 84544037 G T RP11-486G15.2 5'Flank 0.08 TCGA-43-6771-01 1 86814554 86814554 T C ODF2L 3'UTR 0.20 TCGA-43-6771-01 1 94546254 94546254 C A ABCA4 Missense_Mutation p.M293I 0.25 tolerated(0.26) benign(0) TCGA-43-6771-01 20 25203568 25203568 T C ENTPD6 Silent p.Y380Y 0.35 TCGA-43-6771-01 20 50781293 50781293 C A ZFP64 Missense_Mutation p.C151F 0.19 deleterious(0) probably_damaging(0.993) TCGA-43-6771-01 20 61944518 61944518 G C COL20A1 Missense_Mutation p.R709T 0.17 tolerated(0.32) benign(0.216) TCGA-43-6771-01 20 742315 742315 C A SLC52A3 Intron 0.30 TCGA-43-6771-01 21 10998282 10998282 C A TPTE RNA 0.12 TCGA-43-6771-01 21 32253437 32253437 C A KRTAP11-1 Missense_Mutation p.G136V 0.14 tolerated(0.41) benign(0.347) TCGA-43-6771-01 21 43164076 43164076 C A RIPK4 Silent p.L387L 0.23 TCGA-43-6771-01 22 17073086 17073086 C A CCT8L2 Missense_Mutation p.A119S 0.26 deleterious(0.04) probably_damaging(0.999) TCGA-43-6771-01 22 17669238 17669238 C G CECR1 Missense_Mutation p.G358R 0.13 deleterious(0) probably_damaging(1) TCGA-43-6771-01 22 44966431 44966431 T A LINC00207 RNA 0.21 TCGA-43-6771-01 22 45133072 45133072 G T PRR5 Missense_Mutation p.R394L 0.28 tolerated_low_confidence(0.17) benign(0.14) TCGA-43-6771-01 22 45802744 45802744 C A SMC1B Nonsense_Mutation p.G101* 0.11 TCGA-43-6771-01 22 45802745 45802745 C A SMC1B Silent p.G100G 0.11 TCGA-43-6771-01 22 49042449 49042449 C T FAM19A5 Silent p.D51D 0.12 TCGA-43-6771-01 2 125284887 125284887 C A CNTNAP5 Silent p.S500S 0.17 TCGA-43-6771-01 2 131519981 131519981 G T AMER3 Silent p.V112V 0.21 TCGA-43-6771-01 2 141660699 141660699 G T LRP1B Missense_Mutation p.H1186N 0.15 benign(0.107) TCGA-43-6771-01 2 141665614 141665614 C T LRP1B Missense_Mutation p.G1118R 0.21 probably_damaging(0.998) TCGA-43-6771-01 2 141762970 141762970 G T LRP1B Missense_Mutation p.P813T 0.19 possibly_damaging(0.641) TCGA-43-6771-01 2 145156530 145156530 G T ZEB2 Missense_Mutation p.P742T 0.22 tolerated(0.32) benign(0.016) TCGA-43-6771-01 2 162760576 162760576 G A SLC4A10 Missense_Mutation p.R502K 0.24 tolerated(1) benign(0.003) TCGA-43-6771-01 2 16742721 16742721 C A FAM49A Intron 0.32 TCGA-43-6771-01 2 186671346 186671346 T C FSIP2 Silent p.P5860P 0.27 TCGA-43-6771-01 2 188210986 188210986 A T CALCRL Silent p.P437P 0.20 TCGA-43-6771-01 2 189599601 189599601 G T DIRC1 Missense_Mutation p.P16H 0.21 deleterious_low_confidence(0.04) probably_damaging(0.95) TCGA-43-6771-01 2 203622139 203622139 G T FAM117B Silent p.L436L 0.24 TCGA-43-6771-01 2 207040914 207040914 G C GPR1 Missense_Mutation p.T353R 0.19 deleterious_low_confidence(0) possibly_damaging(0.839) TCGA-43-6771-01 2 26502066 26502066 G T HADHB Missense_Mutation p.A232S 0.22 tolerated(0.17) benign(0.417) TCGA-43-6771-01 2 32740406 32740406 G T BIRC6 Missense_Mutation p.A3640S 0.22 benign(0.006) TCGA-43-6771-01 2 32750596 32750596 A T BIRC6 Missense_Mutation p.R3941W 0.18 probably_damaging(0.995) TCGA-43-6771-01 2 50149153 50149153 C A NRXN1 Nonsense_Mutation p.E1525* 0.24 TCGA-43-6771-01 2 89103856 89103856 C A ANKRD36BP2 RNA 0.20 TCGA-43-6771-01 2 99155388 99155388 C T INPP4A Missense_Mutation p.A205V 0.19 tolerated(0.08) benign(0.093) TCGA-43-6771-01 3 100378607 100378607 C A GPR128 Silent p.T633T 0.21 TCGA-43-6771-01 3 102183089 102183089 T A ZPLD1 Missense_Mutation p.F268Y 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-43-6771-01 3 10400554 10400554 G A ATP2B2 Missense_Mutation p.R653W 0.10 deleterious(0) probably_damaging(0.958) TCGA-43-6771-01 3 113878657 113878657 C T DRD3 Missense_Mutation p.D110N 0.36 deleterious(0) probably_damaging(1) TCGA-43-6771-01 3 121228898 121228898 C A POLQ Missense_Mutation p.D602Y 0.27 deleterious(0) possibly_damaging(0.56) TCGA-43-6771-01 3 128292613 128292613 C G C3orf27 5'UTR 0.47 TCGA-43-6771-01 3 128292623 128292623 C A C3orf27 5'UTR 0.47 TCGA-43-6771-01 3 13611931 13611931 G T FBLN2 Missense_Mutation p.A26S 0.40 tolerated(0.44) unknown(0) TCGA-43-6771-01 3 140251217 140251217 G A CLSTN2 Missense_Mutation p.V466I 0.10 deleterious(0.02) probably_damaging(0.971) TCGA-43-6771-01 3 147113994 147113994 G T ZIC4 Missense_Mutation p.H161Q 0.24 tolerated(0.07) probably_damaging(0.954) TCGA-43-6771-01 3 147128391 147128391 G T ZIC1 Missense_Mutation p.R164S 0.40 deleterious(0.02) possibly_damaging(0.787) TCGA-43-6771-01 3 147130402 147130402 G T ZIC1 Missense_Mutation p.K360N 0.11 deleterious(0) probably_damaging(0.992) TCGA-43-6771-01 3 148596536 148596536 G T CPA3 Splice_Site p.X158_splice 0.27 TCGA-43-6771-01 3 169847268 169847268 T G PHC3 Missense_Mutation p.K331T 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-43-6771-01 3 183696311 183696311 A T ABCC5 Missense_Mutation p.F426I 0.21 tolerated(0.27) benign(0.003) TCGA-43-6771-01 3 190039968 190039968 C G CLDN1 Missense_Mutation p.G10R 0.21 deleterious(0) probably_damaging(0.999) TCGA-43-6771-01 3 26751354 26751354 C A LRRC3B Missense_Mutation p.P64H 0.27 tolerated(0.13) possibly_damaging(0.69) TCGA-43-6771-01 3 49146522 49146522 G A USP19 Missense_Mutation p.P1377S 0.19 tolerated_low_confidence(0.8) benign(0.034) TCGA-43-6771-01 3 52568677 52568677 G T NT5DC2 5'Flank 0.22 TCGA-43-6771-01 3 77147370 77147370 C A ROBO2 Silent p.S105S 0.23 TCGA-43-6771-01 4 114277038 114277038 A C ANK2 Missense_Mutation p.S2422R 0.14 probably_damaging(1) TCGA-43-6771-01 4 71472446 71472446 G C AMBN Nonstop_Mutation p.*448Sext*3 0.45 TCGA-43-6771-01 4 80990634 80990634 C T ANTXR2 Silent p.V84V 0.29 TCGA-43-6771-01 4 86988994 86988994 C A MAPK10 Missense_Mutation p.G306V 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-43-6771-01 5 115628185 115628185 G A COMMD10 Silent p.%3D 0.18 TCGA-43-6771-01 5 132269995 132269995 A C AFF4 Silent p.T254T 0.12 TCGA-43-6771-01 5 132269996 132269996 G A AFF4 Missense_Mutation p.T254I 0.11 deleterious(0) probably_damaging(0.999) TCGA-43-6771-01 5 140188054 140188054 C T PCDHA4 Nonsense_Mutation p.R428* 0.22 TCGA-43-6771-01 5 140215252 140215252 G T PCDHA7 Silent p.R428R 0.17 TCGA-43-6771-01 5 140237924 140237924 A T PCDHA10 Missense_Mutation p.K764M 0.22 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-43-6771-01 5 140720255 140720255 A T PCDHGA2 Missense_Mutation p.T573S 0.21 deleterious_low_confidence(0.03) benign(0.303) TCGA-43-6771-01 5 140799073 140799073 C T PCDHGB7 Silent p.R549R 0.11 TCGA-43-6771-01 5 140801878 140801878 C T PCDHGA11 Missense_Mutation p.P362S 0.13 tolerated_low_confidence(0.11) possibly_damaging(0.642) TCGA-43-6771-01 5 140812405 140812405 G C PCDHGA12 Silent p.L693L 0.18 TCGA-43-6771-01 5 149907838 149907838 G T NDST1 Missense_Mutation p.R329L 0.24 deleterious(0) probably_damaging(1) TCGA-43-6771-01 5 154397042 154397042 C T KIF4B Missense_Mutation p.P1208L 0.22 tolerated_low_confidence(1) benign(0.002) TCGA-43-6771-01 5 156590131 156590131 G T FAM71B Missense_Mutation p.T382N 0.20 deleterious(0.04) benign(0.08) TCGA-43-6771-01 5 156590133 156590133 C G FAM71B Silent p.T381T 0.22 TCGA-43-6771-01 5 156590401 156590401 G T FAM71B Missense_Mutation p.A292E 0.22 tolerated(0.45) benign(0.011) TCGA-43-6771-01 5 168201328 168201328 G C SLIT3 Missense_Mutation p.Q403E 0.24 tolerated(0.23) benign(0.345) TCGA-43-6771-01 5 172351073 172351073 G T ERGIC1 Silent p.T147T 0.17 TCGA-43-6771-01 5 32101331 32101331 A G PDZD2 Missense_Mutation p.K2780R 0.32 deleterious(0.02) probably_damaging(1) TCGA-43-6771-01 5 32274181 32274181 C A MTMR12 Nonsense_Mutation p.E64* 0.26 TCGA-43-6771-01 5 35921196 35921196 T A CAPSL Silent p.R9R 0.31 TCGA-43-6771-01 5 36265127 36265127 T - RANBP3L Frame_Shift_Del p.V164* 0.28 TCGA-43-6771-01 5 55195757 55195757 C A IL31RA Missense_Mutation p.A289D 0.16 tolerated(0.29) benign(0.012) TCGA-43-6771-01 5 65344565 65344565 C T ERBB2IP Missense_Mutation p.S620F 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-43-6771-01 5 94848321 94848321 G A TTC37 Missense_Mutation p.T927I 0.17 tolerated(0.11) benign(0.212) TCGA-43-6771-01 6 11105035 11105035 G T ERVFRD-1 Missense_Mutation p.P170Q 0.41 tolerated(0.05) benign(0.31) TCGA-43-6771-01 6 117037477 117037477 G T KPNA5 Missense_Mutation p.S251I 0.44 deleterious(0.04) benign(0.117) TCGA-43-6771-01 6 117248301 117248301 C T RFX6 Missense_Mutation p.P666L 0.38 tolerated_low_confidence(0.26) benign(0.003) TCGA-43-6771-01 6 33403080 33403080 G A SYNGAP1 Missense_Mutation p.E221K 0.53 deleterious(0) benign(0.114) TCGA-43-6771-01 6 35278241 35278241 G T DEF6 Missense_Mutation p.E81D 0.38 tolerated(0.19) benign(0.124) TCGA-43-6771-01 6 69349089 69349089 G T BAI3 Missense_Mutation p.W174C 0.49 deleterious(0) probably_damaging(0.985) TCGA-43-6771-01 7 124499166 124499166 C A POT1 Missense_Mutation p.V183L 0.41 deleterious(0) possibly_damaging(0.759) TCGA-43-6771-01 7 142028315 142028315 G T TRBV6-1 Splice_Site p.X17_splice 0.08 TCGA-43-6771-01 7 143747807 143747807 A G OR2A5 Missense_Mutation p.M105V 0.13 deleterious(0.03) benign(0.005) TCGA-43-6771-01 7 31617997 31617997 G C CCDC129 Missense_Mutation p.K399N 0.23 deleterious(0) probably_damaging(0.933) TCGA-43-6771-01 7 34182925 34182925 A C BMPER Missense_Mutation p.Q610P 0.37 tolerated(0.11) possibly_damaging(0.461) TCGA-43-6771-01 7 63721308 63721308 G T ZNF679 Splice_Site p.X88_splice 0.43 TCGA-43-6771-01 7 81667449 81667449 T C CACNA2D1 Missense_Mutation p.K328E 0.37 tolerated(0.11) benign(0.212) TCGA-43-6771-01 8 10464903 10464903 C T RP1L1 Silent p.G2235G 0.16 TCGA-43-6771-01 8 120435214 120435214 A G NOV Missense_Mutation p.T306A 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-43-6771-01 8 125083789 125083789 G C FER1L6 Missense_Mutation p.E1337Q 0.11 tolerated(0.17) benign(0.09) TCGA-43-6771-01 8 140630959 140630959 A T KCNK9 Missense_Mutation p.F223I 0.11 deleterious(0) possibly_damaging(0.823) TCGA-43-6771-01 8 143958589 143958589 G T CYP11B1 Missense_Mutation p.L149M 0.10 tolerated(0.21) probably_damaging(0.999) TCGA-43-6771-01 8 25234906 25234906 A G DOCK5 Missense_Mutation p.Y1301C 0.15 deleterious(0) probably_damaging(0.989) TCGA-43-6771-01 8 29202894 29202894 C A DUSP4 Intron 0.20 TCGA-43-6771-01 9 21206376 21206376 T A IFNA10 3'UTR 0.64 TCGA-43-6771-01 9 34971600 34971600 C A KIAA1045 Missense_Mutation p.P102H 0.37 deleterious(0) probably_damaging(0.937) TCGA-43-6771-01 9 6328676 6328676 C T TPD52L3 Silent p.P27P 0.31 TCGA-43-6771-01 9 97522149 97522149 G T C9orf3 Silent p.L28L 0.36 TCGA-43-6771-01 X 109694807 109694807 C G RGAG1 Missense_Mutation p.S321C 0.36 deleterious(0.01) probably_damaging(0.986) TCGA-43-6771-01 X 151138714 151138714 G C GABRE Missense_Mutation p.R73G 0.39 tolerated(0.1) benign(0.116) TCGA-43-6771-01 X 153207088 153207088 C A RENBP Missense_Mutation p.G263V 0.50 deleterious(0) probably_damaging(1) TCGA-43-6771-01 X 27839468 27839468 C A MAGEB10 Silent p.R15R 0.37 TCGA-43-6771-01 X 3242791 3242791 T A MXRA5 Missense_Mutation p.Q312L 0.41 deleterious(0.01) benign(0.295) TCGA-43-6773-01 10 12191900 12191900 G A SEC61A2 Silent p.T134T 0.12 TCGA-43-6773-01 10 135197637 135197637 C T PAOX Missense_Mutation p.P348S 0.06 tolerated(0.07) benign(0.444) TCGA-43-6773-01 11 5373433 5373433 G A OR51B6 Silent p.R232R 0.13 TCGA-43-6773-01 11 58602195 58602195 C T GLYATL2 Missense_Mutation p.D198N 0.09 tolerated(1) benign(0.003) TCGA-43-6773-01 11 6499986 6499986 C T ARFIP2 Silent p.Q173Q 0.12 TCGA-43-6773-01 11 65977848 65977848 C A PACS1 Missense_Mutation p.L154I 0.12 deleterious(0) probably_damaging(0.998) TCGA-43-6773-01 11 8132346 8132346 C G RIC3 Missense_Mutation p.E337Q 0.09 tolerated_low_confidence(0.43) benign(0.005) TCGA-43-6773-01 12 112451248 112451248 C G ERP29 5'UTR 0.05 TCGA-43-6773-01 12 49485043 49485043 G A DHH Missense_Mutation p.R145C 0.05 deleterious(0) probably_damaging(1) TCGA-43-6773-01 12 49958634 49958634 T G MCRS1 Silent p.P124P 0.07 TCGA-43-6773-01 12 56428909 56428909 C T IKZF4 Missense_Mutation p.R518W 0.06 deleterious(0) probably_damaging(0.997) TCGA-43-6773-01 12 73056972 73056972 C G TRHDE Missense_Mutation p.H1024Q 0.07 deleterious_low_confidence(0) possibly_damaging(0.88) TCGA-43-6773-01 14 103596354 103596354 T C TNFAIP2 Silent p.L331L 0.11 TCGA-43-6773-01 14 107113959 107113959 C G IGHV3-64 Missense_Mutation p.G46R 0.06 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-43-6773-01 15 75890810 75890811 GA - SNUPN Frame_Shift_Del p.L324Hfs*6 0.08 TCGA-43-6773-01 15 90170271 90170271 C T TICRR Missense_Mutation p.T1896I 0.04 deleterious(0) probably_damaging(0.973) TCGA-43-6773-01 16 1503837 1503837 G A CLCN7 Silent p.I404I 0.09 TCGA-43-6773-01 16 49764694 49764694 G A ZNF423 Missense_Mutation p.R89C 0.07 deleterious(0.01) possibly_damaging(0.766) TCGA-43-6773-01 16 72822702 72822702 G A ZFHX3 Missense_Mutation p.T3158I 0.11 unknown(0) TCGA-43-6773-01 17 16343520 16343520 A G TRPV2 3'Flank 0.13 TCGA-43-6773-01 17 38792658 38792658 C A SMARCE1 Nonsense_Mutation p.E120* 0.14 TCGA-43-6773-01 17 42635785 42635785 C T FZD2 Silent p.F243F 0.08 TCGA-43-6773-01 17 56355289 56355289 C T MPO Missense_Mutation p.R368H 0.16 tolerated(0.1) benign(0.003) TCGA-43-6773-01 17 57652802 57652802 A C DHX40 Missense_Mutation p.I315L 0.06 deleterious(0) probably_damaging(0.958) TCGA-43-6773-01 17 7578208 7578208 T C TP53 Missense_Mutation p.H214R 0.12 deleterious(0.02) probably_damaging(0.922) TCGA-43-6773-01 17 7701893 7701893 C T DNAH2 Missense_Mutation p.R2806C 0.13 possibly_damaging(0.846) TCGA-43-6773-01 17 7701894 7701894 G T DNAH2 Missense_Mutation p.R2806L 0.13 benign(0.015) TCGA-43-6773-01 17 77757900 77757900 G A CBX2 Missense_Mutation p.E220K 0.13 tolerated(0.27) possibly_damaging(0.585) TCGA-43-6773-01 18 21644113 21644113 C T TTC39C Silent p.S59S 0.09 TCGA-43-6773-01 18 55319715 55319715 C G ATP8B1 Splice_Site p.X1087_splice 0.15 TCGA-43-6773-01 18 63481823 63481823 C G CDH7 Nonsense_Mutation p.S203* 0.08 TCGA-43-6773-01 19 18649218 18649218 C T FKBP8 Missense_Mutation p.A194T 0.18 tolerated(0.55) benign(0.084) TCGA-43-6773-01 19 22939241 22939241 C G ZNF99 3'Flank 0.09 TCGA-43-6773-01 19 51729262 51729262 A C CD33 Missense_Mutation p.T208P 0.14 deleterious(0) probably_damaging(0.998) TCGA-43-6773-01 19 52618277 52618277 C T ZNF616 Missense_Mutation p.E714K 0.05 deleterious(0.04) possibly_damaging(0.638) TCGA-43-6773-01 1 161494361 161494361 G T HSPA6 5'UTR 0.24 TCGA-43-6773-01 1 196883633 196883633 G C CFHR4 Missense_Mutation p.D396H 0.14 deleterious(0.02) possibly_damaging(0.861) TCGA-43-6773-01 1 214498028 214498028 T - SMYD2 Frame_Shift_Del p.L194Wfs*11 0.15 TCGA-43-6773-01 1 247769058 247769058 C T OR2G3 Silent p.T57T 0.15 TCGA-43-6773-01 20 13055116 13055116 C G SPTLC3 Missense_Mutation p.T193R 0.06 deleterious(0.02) benign(0.17) TCGA-43-6773-01 22 43716044 43716044 T C SCUBE1 Missense_Mutation p.Y83C 0.07 tolerated(0.07) possibly_damaging(0.827) TCGA-43-6773-01 2 144728277 144728277 C G GTDC1 Missense_Mutation p.D310H 0.07 deleterious(0) possibly_damaging(0.682) TCGA-43-6773-01 2 166847955 166847955 T A SCN1A Nonsense_Mutation p.K1944* 0.08 TCGA-43-6773-01 2 166848603 166848603 C T SCN1A Missense_Mutation p.G1728R 0.11 deleterious(0.01) possibly_damaging(0.799) TCGA-43-6773-01 2 170062593 170062593 T - LRP2 Frame_Shift_Del p.N2499Tfs*4 0.10 TCGA-43-6773-01 2 202550763 202550763 C G MPP4 Missense_Mutation p.S124T 0.12 tolerated(0.06) benign(0.035) TCGA-43-6773-01 2 70314991 70314991 T G PCBP1 Missense_Mutation p.I39S 0.08 deleterious(0.01) benign(0.014) TCGA-43-6773-01 2 74802628 74802628 C A M1AP Missense_Mutation p.Q337H 0.14 deleterious(0.03) possibly_damaging(0.889) TCGA-43-6773-01 2 77745507 77745507 C T LRRTM4 Missense_Mutation p.M496I 0.12 tolerated(0.05) benign(0.071) TCGA-43-6773-01 2 86258669 86258669 T C POLR1A Silent p.E1454E 0.06 TCGA-43-6773-01 2 87012950 87012950 A G CD8A 3'UTR 0.07 TCGA-43-6773-01 3 146239809 146239809 A C PLSCR1 Nonsense_Mutation p.Y129* 0.05 TCGA-43-6773-01 4 128807640 128807640 A T PLK4 Missense_Mutation p.Y372F 0.14 tolerated(0.09) probably_damaging(0.997) TCGA-43-6773-01 4 57182368 57182368 C G KIAA1211 Silent p.L900L 0.10 TCGA-43-6773-01 4 79832743 79832743 T A BMP2K Silent p.T1014T 0.09 TCGA-43-6773-01 5 151771813 151771813 G A NMUR2 Missense_Mutation p.A396V 0.05 tolerated_low_confidence(0.15) benign(0.002) TCGA-43-6773-01 6 133078617 133078617 G A VNN2 Silent p.F94F 0.10 TCGA-43-6773-01 6 149918211 149918211 G C KATNA1 Missense_Mutation p.T422S 0.05 tolerated(0.14) probably_damaging(0.99) TCGA-43-6773-01 6 24520658 24520658 G C ALDH5A1 Silent p.V313V 0.07 TCGA-43-6773-01 6 24554806 24554806 C T KIAA0319 Missense_Mutation p.G971R 0.08 deleterious(0.03) possibly_damaging(0.671) TCGA-43-6773-01 6 28219717 28219717 C A ZKSCAN4 Missense_Mutation p.Q14H 0.09 tolerated(0.21) benign(0.002) TCGA-43-6773-01 6 30954571 30954571 G T MUC21 Missense_Mutation p.A207S 0.09 tolerated(0.36) unknown(0) TCGA-43-6773-01 6 49753654 49753654 T G PGK2 Missense_Mutation p.N416T 0.08 deleterious(0.03) benign(0.079) TCGA-43-6773-01 6 52131414 52131414 G A MCM3 Missense_Mutation p.P763L 0.09 deleterious(0.04) benign(0.005) TCGA-43-6773-01 7 126173323 126173323 C T GRM8 Missense_Mutation p.V705I 0.16 tolerated(0.27) benign(0.005) TCGA-43-6773-01 7 127235881 127235881 G C FSCN3 Missense_Mutation p.G222A 0.19 deleterious(0.03) benign(0.345) TCGA-43-6773-01 7 142991832 142991832 A G CASP2 Missense_Mutation p.Y238C 0.17 deleterious(0) probably_damaging(0.998) TCGA-43-6773-01 7 42958888 42958888 T C PSMA2 Intron 0.18 TCGA-43-6773-01 8 131949325 131949326 - T ADCY8 Frame_Shift_Ins p.T492Nfs*14 0.12 TCGA-43-6773-01 8 134050863 134050863 G A SLA Missense_Mutation p.S286F 0.10 deleterious(0.02) possibly_damaging(0.554) TCGA-43-6773-01 8 139845379 139845379 C A COL22A1 Missense_Mutation p.D250Y 0.11 unknown(0) TCGA-43-6773-01 8 20005520 20005520 A G SLC18A1 Missense_Mutation p.I403T 0.10 deleterious(0.03) probably_damaging(0.93) TCGA-43-6773-01 8 88886101 88886101 C A DCAF4L2 Missense_Mutation p.Q33H 0.14 tolerated(0.22) benign(0.049) TCGA-43-6773-01 9 117131 117131 G A FOXD4 Missense_Mutation p.S330L 0.11 tolerated(0.54) benign(0.006) TCGA-43-6773-01 9 136650937 136650937 T C VAV2 Missense_Mutation p.D498G 0.10 deleterious(0) possibly_damaging(0.5) TCGA-43-6773-01 9 77359045 77359045 T A TRPM6 Missense_Mutation p.L1700F 0.06 tolerated(0.56) benign(0.033) TCGA-43-6773-01 9 77359051 77359051 G C TRPM6 Silent p.A1698A 0.06 TCGA-43-6773-01 9 77377086 77377086 C T TRPM6 Missense_Mutation p.D1501N 0.09 tolerated_low_confidence(0.52) benign(0.002) TCGA-43-6773-01 X 136113726 136113726 G A GPR101 Silent p.T36T 0.17 TCGA-43-6773-01 X 53112166 53112166 G A TSPYL2 Silent p.P162P 0.18 TCGA-43-7656-01 10 100219335 100219335 C T HPSE2 Missense_Mutation p.R592Q 0.26 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-43-7656-01 10 108923843 108923843 C A SORCS1 Missense_Mutation p.D148Y 0.21 deleterious(0.04) possibly_damaging(0.627) TCGA-43-7656-01 10 108923844 108923844 C A SORCS1 Silent p.P147P 0.22 TCGA-43-7656-01 10 115370229 115370229 G T NRAP Missense_Mutation p.L1198I 0.21 tolerated(0.34) possibly_damaging(0.885) TCGA-43-7656-01 10 117884908 117884908 C G GFRA1 Missense_Mutation p.Q198H 0.21 deleterious(0.05) benign(0.065) TCGA-43-7656-01 10 118357344 118357344 G A PNLIPRP1 Silent p.L193L 0.25 TCGA-43-7656-01 10 129899630 129899630 G C MKI67 Missense_Mutation p.C3199W 0.09 tolerated(0.07) benign(0.19) TCGA-43-7656-01 10 131761951 131761951 G C EBF3 Missense_Mutation p.R28G 0.32 deleterious_low_confidence(0.02) probably_damaging(0.983) TCGA-43-7656-01 10 13214692 13214692 T A MCM10 Missense_Mutation p.F174L 0.35 tolerated(0.06) possibly_damaging(0.799) TCGA-43-7656-01 10 134261455 134261455 C G C10orf91 Missense_Mutation p.P110A 0.32 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-43-7656-01 10 25887285 25887285 G A GPR158 Silent p.K910K 0.23 TCGA-43-7656-01 10 31810422 31810422 T A ZEB1 Nonsense_Mutation p.L721* 0.27 TCGA-43-7656-01 10 52570812 52570812 T C A1CF Missense_Mutation p.Q491R 0.25 tolerated(0.25) probably_damaging(0.995) TCGA-43-7656-01 10 55719564 55719564 G T PCDH15 Missense_Mutation p.S1017Y 0.25 deleterious(0.01) possibly_damaging(0.905) TCGA-43-7656-01 10 55973800 55973800 C T PCDH15 Missense_Mutation p.E332K 0.32 tolerated(0.3) benign(0.206) TCGA-43-7656-01 10 71969419 71969419 C T PPA1 Silent p.L178L 0.24 TCGA-43-7656-01 10 72360433 72360433 A T PRF1 Missense_Mutation p.C76S 0.24 deleterious(0) probably_damaging(1) TCGA-43-7656-01 10 90591784 90591784 C T ANKRD22 Splice_Site p.X8_splice 0.25 TCGA-43-7656-01 10 95718538 95718538 A T PIPSL RNA 0.13 TCGA-43-7656-01 11 105929633 105929633 C G KBTBD3 Silent p.P64P 0.16 TCGA-43-7656-01 11 111844950 111844950 G A DIXDC1 Missense_Mutation p.G174R 0.18 deleterious(0) probably_damaging(1) TCGA-43-7656-01 11 112072797 112072797 A C BCO2 Missense_Mutation p.N360H 0.24 deleterious(0) possibly_damaging(0.633) TCGA-43-7656-01 11 117165862 117165862 A G BACE1 Silent p.Y184Y 0.27 TCGA-43-7656-01 11 119227976 119227976 C A USP2 Nonsense_Mutation p.G551* 0.33 TCGA-43-7656-01 11 122022955 122022955 A G MIR100 RNA 0.23 TCGA-43-7656-01 11 124310355 124310355 C A OR8B8 Silent p.V209V 0.28 TCGA-43-7656-01 11 128680830 128680830 G A FLI1 Missense_Mutation p.V436I 0.26 tolerated(0.17) benign(0.007) TCGA-43-7656-01 11 14303267 14303267 C A RRAS2 Splice_Site p.X137_splice 0.24 TCGA-43-7656-01 11 19247052 19247052 C T E2F8 Missense_Mutation p.G713R 0.24 tolerated(0.36) possibly_damaging(0.844) TCGA-43-7656-01 11 25071601 25071601 T G LUZP2 Silent p.S261S 0.21 TCGA-43-7656-01 11 33350149 33350149 G - HIPK3 Frame_Shift_Del p.L398Sfs*26 0.22 TCGA-43-7656-01 11 5372935 5372935 T A OR51B6 Silent p.A66A 0.33 TCGA-43-7656-01 11 55110869 55110869 T G OR4A16 Missense_Mutation p.S65A 0.23 deleterious_low_confidence(0.01) benign(0.32) TCGA-43-7656-01 11 55653204 55653204 G T TRIM51 Missense_Mutation p.K100N 0.25 deleterious(0.01) benign(0.25) TCGA-43-7656-01 11 56000019 56000019 G T OR5T2 Missense_Mutation p.R215S 0.23 deleterious(0.03) benign(0.08) TCGA-43-7656-01 11 58274726 58274726 A G OR5B21 Silent p.L285L 0.26 TCGA-43-7656-01 11 5863044 5863044 C G OR52E6 Missense_Mutation p.W28C 0.32 deleterious(0) possibly_damaging(0.907) TCGA-43-7656-01 11 59189919 59189919 A G OR5A2 Missense_Mutation p.C170R 0.21 deleterious(0) probably_damaging(1) TCGA-43-7656-01 11 59283322 59283322 A G OR4D9 Missense_Mutation p.I313V 0.26 tolerated_low_confidence(0.42) benign(0) TCGA-43-7656-01 11 59480506 59480506 C A OR10V1 Missense_Mutation p.M271I 0.30 tolerated(0.07) benign(0.005) TCGA-43-7656-01 11 60183620 60183620 C A MS4A14 Missense_Mutation p.H426Q 0.32 tolerated(0.72) benign(0.004) TCGA-43-7656-01 11 6048066 6048066 A G OR56A1 Missense_Mutation p.I290T 0.35 deleterious(0.01) possibly_damaging(0.596) TCGA-43-7656-01 11 61897578 61897578 C T INCENP Silent p.P193P 0.25 TCGA-43-7656-01 11 62384264 62384264 C A B3GAT3 Missense_Mutation p.R208L 0.31 deleterious(0) possibly_damaging(0.816) TCGA-43-7656-01 11 64428005 64428005 C A NRXN2 Missense_Mutation p.A730S 0.16 tolerated(0.07) benign(0.074) TCGA-43-7656-01 11 64428006 64428006 C A NRXN2 Missense_Mutation p.E729D 0.16 tolerated(0.29) benign(0.001) TCGA-43-7656-01 11 67069081 67069081 A T ANKRD13D Missense_Mutation p.I491F 0.33 deleterious(0.01) possibly_damaging(0.854) TCGA-43-7656-01 11 70007741 70007741 G T ANO1 Silent p.T598T 0.31 TCGA-43-7656-01 11 70007742 70007742 G T ANO1 Nonsense_Mutation p.E599* 0.32 TCGA-43-7656-01 11 71293710 71293710 G A KRTAP5-11 Silent p.G58G 0.27 TCGA-43-7656-01 11 72404370 72404370 C A ARAP1 Silent p.R1318R 0.25 TCGA-43-7656-01 12 10151784 10151784 G C CLEC1B 5'UTR 0.33 TCGA-43-7656-01 12 108600119 108600119 G C WSCD2 Missense_Mutation p.V146L 0.31 tolerated(0.11) benign(0.065) TCGA-43-7656-01 12 11461703 11461703 G T PRB4 Missense_Mutation p.P72T 0.17 deleterious_low_confidence(0) unknown(0) TCGA-43-7656-01 12 115121051 115121051 G T TBX3 5'UTR 0.24 TCGA-43-7656-01 12 120613986 120613986 G A GCN1L1 Silent p.D291D 0.26 TCGA-43-7656-01 12 121098057 121098057 G T CABP1 Silent p.R248R 0.30 TCGA-43-7656-01 12 123060105 123060105 G T KNTC1 Missense_Mutation p.V800L 0.33 deleterious(0) probably_damaging(0.976) TCGA-43-7656-01 12 124270480 124270480 T G DNAH10 Missense_Mutation p.F412C 0.18 probably_damaging(0.981) TCGA-43-7656-01 12 133252711 133252711 C A POLE Missense_Mutation p.G330V 0.25 deleterious(0) probably_damaging(1) TCGA-43-7656-01 12 20885846 20885846 T A SLCO1C1 Missense_Mutation p.L397H 0.16 deleterious(0) probably_damaging(0.971) TCGA-43-7656-01 12 307974 307974 T G SLC6A12 Missense_Mutation p.K279Q 0.19 tolerated(0.28) benign(0.011) TCGA-43-7656-01 12 30814129 30814130 - AT IPO8 Frame_Shift_Ins p.M609Ifs*12 0.24 TCGA-43-7656-01 12 39709752 39709752 G A KIF21A Missense_Mutation p.S1310F 0.23 tolerated(0.43) possibly_damaging(0.825) TCGA-43-7656-01 12 40697955 40697955 C G LRRK2 Intron 0.29 TCGA-43-7656-01 12 49666087 49666087 G C TUBA1C Missense_Mutation p.G143R 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-43-7656-01 12 54969843 54969843 G T PDE1B Missense_Mutation p.Q445H 0.32 tolerated(0.2) benign(0.144) TCGA-43-7656-01 12 56506674 56506674 G A PA2G4 3'UTR 0.26 TCGA-43-7656-01 12 57578875 57578875 A T LRP1 Missense_Mutation p.N2117I 0.29 probably_damaging(0.996) TCGA-43-7656-01 12 71519084 71519084 G A TSPAN8 3'UTR 0.31 TCGA-43-7656-01 12 81283029 81283029 C T LIN7A Splice_Site p.X67_splice 0.29 TCGA-43-7656-01 12 86272323 86272323 C A NTS Missense_Mutation p.H112Q 0.28 tolerated(0.26) benign(0.031) TCGA-43-7656-01 12 93968526 93968526 T C SOCS2 Silent p.N56N 0.30 TCGA-43-7656-01 12 95611609 95611609 G T VEZT 5'UTR 0.25 TCGA-43-7656-01 13 103518380 103518380 G A ERCC5 Intron 0.50 TCGA-43-7656-01 13 113086755 113086755 C A SPACA7 Intron 0.49 TCGA-43-7656-01 13 23908507 23908507 G C SACS Missense_Mutation p.R3170G 0.42 benign(0.109) TCGA-43-7656-01 13 23927935 23927935 G A SACS Missense_Mutation p.A725V 0.32 possibly_damaging(0.505) TCGA-43-7656-01 13 26621071 26621071 C G SHISA2 Silent p.G156G 0.33 TCGA-43-7656-01 13 39263303 39263303 G T FREM2 Missense_Mutation p.G608W 0.36 deleterious(0) probably_damaging(1) TCGA-43-7656-01 13 50276565 50276565 T G KPNA3 Missense_Mutation p.K475T 0.46 deleterious(0.03) probably_damaging(0.997) TCGA-43-7656-01 13 70413208 70413208 T C KLHL1 Silent p.L438L 0.46 TCGA-43-7656-01 13 78477723 78477723 G A EDNRB Missense_Mutation p.P258L 0.50 tolerated(0.66) possibly_damaging(0.754) TCGA-43-7656-01 13 78477724 78477724 G T EDNRB Missense_Mutation p.P258T 0.50 tolerated(0.09) probably_damaging(0.986) TCGA-43-7656-01 14 19553717 19553717 T C POTEG Missense_Mutation p.W101R 0.08 deleterious_low_confidence(0) possibly_damaging(0.895) TCGA-43-7656-01 14 20019920 20019920 A G POTEM Missense_Mutation p.W101R 0.10 deleterious_low_confidence(0.02) benign(0.059) TCGA-43-7656-01 14 20249091 20249091 G T OR4M1 Missense_Mutation p.G204C 0.28 deleterious(0) probably_damaging(1) TCGA-43-7656-01 14 21542262 21542262 G T ARHGEF40 Missense_Mutation p.A125S 0.38 tolerated(0.64) probably_damaging(0.97) TCGA-43-7656-01 14 22134019 22134019 G T OR4E2 Silent p.S241S 0.33 TCGA-43-7656-01 14 23521692 23521692 A T CDH24 Silent p.A451A 0.48 TCGA-43-7656-01 14 23868035 23868035 T C MYH6 Missense_Mutation p.N598S 0.32 deleterious(0.02) benign(0.097) TCGA-43-7656-01 14 24642545 24642545 A G REC8 Silent p.L129L 0.43 TCGA-43-7656-01 14 42356775 42356775 C A LRFN5 Missense_Mutation p.P316H 0.34 deleterious(0) probably_damaging(1) TCGA-43-7656-01 14 42360642 42360642 G - LRFN5 Frame_Shift_Del p.G526Efs*4 0.31 TCGA-43-7656-01 14 52485911 52485911 G T NID2 Missense_Mutation p.Q966K 0.45 tolerated(0.43) benign(0.021) TCGA-43-7656-01 14 52735293 52735293 C G PTGDR Missense_Mutation p.S254C 0.49 tolerated(0.19) benign(0.016) TCGA-43-7656-01 14 63269148 63269148 C A KCNH5 Missense_Mutation p.G574V 0.40 deleterious(0) probably_damaging(1) TCGA-43-7656-01 14 79175999 79175999 G C NRXN3 Splice_Site p.X181_splice 0.37 TCGA-43-7656-01 15 23890147 23890147 C G MAGEL2 Missense_Mutation p.E312Q 0.54 deleterious(0.01) benign(0.216) TCGA-43-7656-01 15 23932267 23932267 G A NDN Missense_Mutation p.P33L 0.29 deleterious_low_confidence(0) benign(0.255) TCGA-43-7656-01 15 33938720 33938720 C A RYR3 Missense_Mutation p.Q1312K 0.58 benign(0.003) TCGA-43-7656-01 15 62182437 62182437 A C VPS13C Missense_Mutation p.S3090A 0.27 tolerated(0.34) benign(0.125) TCGA-43-7656-01 15 72700058 72700058 A C TMEM202 Missense_Mutation p.T216P 0.27 deleterious(0.01) possibly_damaging(0.693) TCGA-43-7656-01 15 74043429 74043429 C A C15orf59 Missense_Mutation p.D15Y 0.51 deleterious(0.05) probably_damaging(0.921) TCGA-43-7656-01 15 74636192 74636192 C T CYP11A1 Missense_Mutation p.R256H 0.52 deleterious(0.04) benign(0.415) TCGA-43-7656-01 15 86207823 86207823 C T AKAP13 Missense_Mutation p.A1614V 0.57 tolerated(0.12) benign(0.022) TCGA-43-7656-01 15 89173393 89173393 G C AEN Missense_Mutation p.W282C 0.60 tolerated(0.2) benign(0.002) TCGA-43-7656-01 16 23436118 23436118 T A COG7 Missense_Mutation p.T321S 0.37 tolerated(0.27) benign(0.129) TCGA-43-7656-01 16 24881220 24881220 A T SLC5A11 Splice_Site p.X70_splice 0.53 TCGA-43-7656-01 16 27781279 27781279 C A KIAA0556 Missense_Mutation p.A1358D 0.43 deleterious(0) probably_damaging(0.998) TCGA-43-7656-01 16 30768895 30768895 G T C16orf93 Silent p.R300R 0.43 TCGA-43-7656-01 16 46771749 46771749 C A MYLK3 Missense_Mutation p.R292M 0.23 deleterious(0.02) benign(0.03) TCGA-43-7656-01 16 50667410 50667410 G T NKD1 Silent p.A377A 0.18 TCGA-43-7656-01 16 66776531 66776531 C A DYNC1LI2 Missense_Mutation p.L113F 0.23 tolerated(0.17) possibly_damaging(0.873) TCGA-43-7656-01 16 72830024 72830024 T A ZFHX3 Missense_Mutation p.Q2186L 0.27 probably_damaging(0.985) TCGA-43-7656-01 16 72993516 72993516 C T ZFHX3 Missense_Mutation p.A177T 0.23 benign(0.037) TCGA-43-7656-01 16 77465492 77465492 C A ADAMTS18 Silent p.T65T 0.29 TCGA-43-7656-01 16 82069087 82069087 T C HSD17B2 Missense_Mutation p.C20R 0.21 deleterious(0.04) benign(0.177) TCGA-43-7656-01 16 84213427 84213427 G C TAF1C Nonsense_Mutation p.S577* 0.39 TCGA-43-7656-01 16 89598951 89598951 G T SPG7 Missense_Mutation p.D411Y 0.27 deleterious(0) probably_damaging(1) TCGA-43-7656-01 16 89925739 89925739 G A SPIRE2 Nonsense_Mutation p.W480* 0.14 TCGA-43-7656-01 16 90001715 90001715 G C TUBB3 Missense_Mutation p.V286L 0.24 deleterious_low_confidence(0) benign(0.369) TCGA-43-7656-01 17 10442785 10442785 G T MYH2 Silent p.V414V 0.43 TCGA-43-7656-01 17 11547946 11547946 A G DNAH9 Splice_Site p.X634_splice 0.45 TCGA-43-7656-01 17 1631599 1631599 G C WDR81 Missense_Mutation p.E1116Q 0.49 deleterious(0.01) possibly_damaging(0.908) TCGA-43-7656-01 17 18025462 18025462 G A MYO15A Silent p.V1116V 0.42 TCGA-43-7656-01 17 26094833 26094833 T G NOS2 Missense_Mutation p.K689Q 0.06 tolerated(0.19) benign(0.303) TCGA-43-7656-01 17 26094836 26094836 C T NOS2 Missense_Mutation p.G688S 0.07 tolerated(0.29) benign(0.126) TCGA-43-7656-01 17 27041839 27041839 C T RAB34 Silent p.S285S 0.35 TCGA-43-7656-01 17 33592455 33592455 C T SLFN5 Silent p.L742L 0.41 TCGA-43-7656-01 17 39977988 39977988 G C FKBP10 Silent p.L494L 0.47 TCGA-43-7656-01 17 45438763 45438763 G A EFCAB13 Silent p.K227K 0.55 TCGA-43-7656-01 17 54990861 54990861 C G TRIM25 Silent p.L163L 0.58 TCGA-43-7656-01 17 61271473 61271473 C A TANC2 Nonsense_Mutation p.Y111* 0.58 TCGA-43-7656-01 17 61949469 61949469 G T CSH2 3'UTR 0.50 TCGA-43-7656-01 17 7317773 7317773 G T NLGN2 Missense_Mutation p.V207F 0.42 deleterious(0) probably_damaging(1) TCGA-43-7656-01 17 7577106 7577106 G A TP53 Missense_Mutation p.P278S 0.35 deleterious(0.03) probably_damaging(1) TCGA-43-7656-01 17 76131023 76131023 C A TMC8 Missense_Mutation p.L354M 0.57 tolerated(0.05) probably_damaging(0.955) TCGA-43-7656-01 17 7983539 7983539 G A AC129492.6 Missense_Mutation p.A74T 0.42 benign(0.012) TCGA-43-7656-01 17 8215499 8215499 C A ARHGEF15 Silent p.R48R 0.30 TCGA-43-7656-01 18 28906904 28906904 G T DSG1 Missense_Mutation p.W51L 0.45 deleterious(0) probably_damaging(0.994) TCGA-43-7656-01 18 29044099 29044099 G T DSG3 Missense_Mutation p.S342I 0.40 tolerated(0.1) benign(0.305) TCGA-43-7656-01 18 30254623 30254623 T C KLHL14 Silent p.K628K 0.44 TCGA-43-7656-01 18 31319072 31319072 T C ASXL3 Silent p.S568S 0.16 TCGA-43-7656-01 18 55221594 55221594 C A FECH Missense_Mutation p.R331S 0.37 tolerated(0.1) benign(0.1) TCGA-43-7656-01 18 74729152 74729152 G A MBP Missense_Mutation p.A71V 0.16 tolerated_low_confidence(0.1) benign(0.017) TCGA-43-7656-01 19 15271467 15271467 A G NOTCH3 3'UTR 0.31 TCGA-43-7656-01 19 19381219 19381219 C A TM6SF2 Missense_Mutation p.D78Y 0.74 deleterious(0) probably_damaging(0.997) TCGA-43-7656-01 19 22940852 22940852 G C ZNF99 Missense_Mutation p.P620R 0.65 deleterious(0.01) probably_damaging(0.977) TCGA-43-7656-01 19 24289445 24289445 G C ZNF254 Missense_Mutation p.G85R 0.64 deleterious(0.04) benign(0.142) TCGA-43-7656-01 19 24309679 24309679 C G ZNF254 Missense_Mutation p.P293A 0.15 deleterious(0.02) benign(0.009) TCGA-43-7656-01 19 2733445 2733445 G C SLC39A3 Missense_Mutation p.D83E 0.31 deleterious(0.04) possibly_damaging(0.742) TCGA-43-7656-01 19 31025761 31025761 C A ZNF536 Silent p.G726G 0.70 TCGA-43-7656-01 19 35719285 35719285 C T FAM187B Missense_Mutation p.G100D 0.28 tolerated(0.41) benign(0.017) TCGA-43-7656-01 19 35804347 35804347 G A MAG Missense_Mutation p.R624Q 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-43-7656-01 19 37619473 37619473 G C ZNF420 Missense_Mutation p.G527A 0.24 deleterious(0.02) possibly_damaging(0.857) TCGA-43-7656-01 19 3779451 3779451 T C MATK Splice_Site p.X311_splice 0.43 TCGA-43-7656-01 19 38951142 38951142 C T RYR1 Missense_Mutation p.R830W 0.29 probably_damaging(0.937) TCGA-43-7656-01 19 39805264 39805264 C A LRFN1 Missense_Mutation p.G238V 0.27 deleterious(0.02) possibly_damaging(0.63) TCGA-43-7656-01 19 39915900 39915900 C T PLEKHG2 Missense_Mutation p.A1376V 0.18 deleterious_low_confidence(0.03) benign(0.368) TCGA-43-7656-01 19 49671555 49671555 G A TRPM4 Missense_Mutation p.G163S 0.29 tolerated(0.23) possibly_damaging(0.876) TCGA-43-7656-01 19 49965999 49965999 G A ALDH16A1 Missense_Mutation p.S362N 0.14 tolerated(0.17) possibly_damaging(0.497) TCGA-43-7656-01 19 50180569 50180569 T C PRMT1 Missense_Mutation p.M11T 0.30 tolerated_low_confidence(0.11) benign(0.031) TCGA-43-7656-01 19 50413060 50413060 C A NUP62 Missense_Mutation p.S2I 0.31 deleterious(0) unknown(0) TCGA-43-7656-01 19 53304677 53304677 C A ZNF28 Nonsense_Mutation p.G141* 0.26 TCGA-43-7656-01 19 54233114 54233114 G A MIR518E RNA 0.24 TCGA-43-7656-01 19 54872676 54872676 T C LAIR1 Missense_Mutation p.T71A 0.26 tolerated(0.72) probably_damaging(0.973) TCGA-43-7656-01 19 55247310 55247310 C A KIR3DL3 Missense_Mutation p.P360T 0.27 deleterious(0.05) possibly_damaging(0.703) TCGA-43-7656-01 19 55598762 55598762 C A EPS8L1 Missense_Mutation p.R682S 0.30 deleterious(0) probably_damaging(0.996) TCGA-43-7656-01 19 55649418 55649418 C A TNNT1 Nonsense_Mutation p.E138* 0.25 TCGA-43-7656-01 19 55693423 55693423 C A PTPRH Missense_Mutation p.R1053S 0.34 benign(0.312) TCGA-43-7656-01 19 55693424 55693424 C A PTPRH Missense_Mutation p.R1053M 0.34 benign(0.439) TCGA-43-7656-01 19 56539484 56539484 C T NLRP5 Missense_Mutation p.H629Y 0.14 deleterious(0.02) benign(0.133) TCGA-43-7656-01 19 5680625 5680625 G A C19orf70 5'UTR 0.25 TCGA-43-7656-01 19 7810533 7810533 G A CD209 Missense_Mutation p.P207S 0.09 tolerated(0.07) probably_damaging(0.909) TCGA-43-7656-01 19 7810602 7810602 G A CD209 Missense_Mutation p.P184S 0.37 tolerated(0.11) possibly_damaging(0.857) TCGA-43-7656-01 19 840982 840982 G A PRTN3 5'UTR 0.56 TCGA-43-7656-01 1 110709800 110709800 C A SLC6A17 Silent p.I83I 0.25 TCGA-43-7656-01 1 118524015 118524015 G A SPAG17 Missense_Mutation p.P1961L 0.28 tolerated(0.06) benign(0.012) TCGA-43-7656-01 1 12954603 12954603 T A PRAMEF10 Missense_Mutation p.Y227F 0.31 tolerated(0.17) possibly_damaging(0.447) TCGA-43-7656-01 1 150973020 150973020 G C FAM63A Silent p.G264G 0.23 TCGA-43-7656-01 1 151372579 151372579 T G PSMB4 Missense_Mutation p.M88R 0.18 tolerated(0.1) possibly_damaging(0.736) TCGA-43-7656-01 1 152193109 152193109 A T HRNR Silent p.S332S 0.36 TCGA-43-7656-01 1 158517744 158517744 A G OR6Y1 Missense_Mutation p.I51T 0.30 deleterious(0.01) possibly_damaging(0.655) TCGA-43-7656-01 1 158724645 158724645 A T OR6K6 Missense_Mutation p.R14W 0.34 deleterious_low_confidence(0.03) benign(0.173) TCGA-43-7656-01 1 161326537 161326537 G C SDHC Missense_Mutation p.K104N 0.25 deleterious(0.01) benign(0.026) TCGA-43-7656-01 1 167095889 167095889 G T DUSP27 Missense_Mutation p.R507S 0.25 tolerated(0.72) benign(0) TCGA-43-7656-01 1 169510611 169510611 G T F5 Silent p.T1239T 0.29 TCGA-43-7656-01 1 169660837 169660837 G T SELL 3'UTR 0.43 TCGA-43-7656-01 1 169660838 169660838 G T SELL 3'UTR 0.43 TCGA-43-7656-01 1 176905479 176905479 C G ASTN1 Missense_Mutation p.G802A 0.25 deleterious(0) probably_damaging(0.999) TCGA-43-7656-01 1 203191343 203191343 G T CHIT1 Missense_Mutation p.A239D 0.35 tolerated(0.3) benign(0.125) TCGA-43-7656-01 1 21009373 21009373 G T KIF17 Missense_Mutation p.Q746K 0.29 tolerated(0.12) benign(0.036) TCGA-43-7656-01 1 228238515 228238515 G C WNT3A Missense_Mutation p.D158H 0.32 tolerated(0.06) benign(0.151) TCGA-43-7656-01 1 237551399 237551399 G A RYR2 Missense_Mutation p.G230D 0.23 probably_damaging(0.915) TCGA-43-7656-01 1 237893566 237893566 G T RYR2 Silent p.R3615R 0.30 TCGA-43-7656-01 1 238048495 238048495 A T ZP4 Silent p.P427P 0.28 TCGA-43-7656-01 1 238048822 238048822 C A ZP4 Silent p.R343R 0.30 TCGA-43-7656-01 1 243303313 243303313 C A CEP170 Missense_Mutation p.D1386Y 0.33 deleterious(0) probably_damaging(0.926) TCGA-43-7656-01 1 247978810 247978810 G T OR14A16 Silent p.V74V 0.44 TCGA-43-7656-01 1 248059062 248059062 C A OR2W3 Silent p.P58P 0.19 TCGA-43-7656-01 1 32504184 32504184 A G KHDRBS1 Missense_Mutation p.Y380C 0.25 deleterious(0) probably_damaging(0.941) TCGA-43-7656-01 1 32636515 32636515 G A KPNA6 3'UTR 0.14 TCGA-43-7656-01 1 36824427 36824427 C T STK40 Intron 0.35 TCGA-43-7656-01 1 36931818 36931818 G T CSF3R 3'UTR 0.36 TCGA-43-7656-01 1 37307460 37307460 C A GRIK3 Silent p.L469L 0.25 TCGA-43-7656-01 1 38048434 38048434 C A GNL2 Missense_Mutation p.W247L 0.31 tolerated(0.43) possibly_damaging(0.621) TCGA-43-7656-01 1 52303159 52303159 C A NRD1 Missense_Mutation p.R255M 0.33 deleterious_low_confidence(0.04) benign(0.029) TCGA-43-7656-01 1 60223624 60223624 A T FGGY Nonsense_Mutation p.K536* 0.30 TCGA-43-7656-01 1 74670184 74670184 C T FPGT Silent p.Y151Y 0.20 TCGA-43-7656-01 1 75608934 75608934 G C LHX8 Missense_Mutation p.G174A 0.29 deleterious(0) probably_damaging(1) TCGA-43-7656-01 1 86119691 86119691 T C ZNHIT6 3'UTR 0.29 TCGA-43-7656-01 1 94471020 94471020 C T ABCA4 Missense_Mutation p.V2042I 0.28 tolerated(0.15) benign(0.118) TCGA-43-7656-01 20 16485157 16485157 G A KIF16B Silent p.L346L 0.48 TCGA-43-7656-01 20 17475108 17475108 T C BFSP1 Missense_Mutation p.I537V 0.10 tolerated(0.32) benign(0) TCGA-43-7656-01 20 23669418 23669418 G A CST4 Silent p.Y63Y 0.56 TCGA-43-7656-01 20 37137827 37137827 G A RALGAPB Nonsense_Mutation p.W283* 0.29 TCGA-43-7656-01 20 42744448 42744448 C A JPH2 Nonsense_Mutation p.E623* 0.25 TCGA-43-7656-01 20 44673693 44673693 A G SLC12A5 Missense_Mutation p.T518A 0.18 deleterious(0.01) possibly_damaging(0.507) TCGA-43-7656-01 20 44751370 44751370 G T CD40 Silent p.S126S 0.22 TCGA-43-7656-01 20 51870598 51870598 A C TSHZ2 Missense_Mutation p.S201R 0.32 deleterious(0) possibly_damaging(0.534) TCGA-43-7656-01 20 53171576 53171576 T A DOK5 Missense_Mutation p.H57Q 0.33 tolerated(0.25) benign(0.324) TCGA-43-7656-01 20 53267141 53267141 T A DOK5 3'UTR 0.28 TCGA-43-7656-01 20 58461812 58461814 TGT AA SYCP2 Frame_Shift_Del p.T814Lfs*11 0.13 TCGA-43-7656-01 20 61473300 61473300 C - TCFL5 3'UTR 0.30 TCGA-43-7656-01 21 11038920 11038920 C A BAGE2 RNA 0.07 TCGA-43-7656-01 21 43223073 43223073 C A PRDM15 Silent p.L1280L 0.44 TCGA-43-7656-01 21 45825803 45825803 G T TRPM2 Silent p.T891T 0.46 TCGA-43-7656-01 22 17472938 17472938 C A GAB4 Missense_Mutation p.Q101H 0.09 deleterious(0) probably_damaging(0.934) TCGA-43-7656-01 22 32270299 32270299 C G DEPDC5 Missense_Mutation p.P1193A 0.15 tolerated(0.24) benign(0.02) TCGA-43-7656-01 22 37171803 37171803 A G IFT27 5'UTR 0.23 TCGA-43-7656-01 22 50615413 50615413 A G PANX2 Missense_Mutation p.Q91R 0.20 deleterious(0) probably_damaging(0.987) TCGA-43-7656-01 2 107029701 107029701 T C RGPD3 Missense_Mutation p.E1702G 0.29 deleterious_low_confidence(0) benign(0.403) TCGA-43-7656-01 2 108910239 108910239 C A SULT1C2 Missense_Mutation p.P39Q 0.28 deleterious(0) possibly_damaging(0.826) TCGA-43-7656-01 2 10894166 10894166 T G ATP6V1C2 Missense_Mutation p.V86G 0.13 deleterious(0) possibly_damaging(0.551) TCGA-43-7656-01 2 1168788 1168788 G T SNTG2 Silent p.G170G 0.23 TCGA-43-7656-01 2 125671796 125671796 C G CNTNAP5 Missense_Mutation p.D1284E 0.06 tolerated(1) benign(0.02) TCGA-43-7656-01 2 135741304 135741304 G C MAP3K19 Missense_Mutation p.S1055C 0.28 tolerated(0.17) benign(0.005) TCGA-43-7656-01 2 136566826 136566826 C T LCT Missense_Mutation p.G1031R 0.30 deleterious(0) probably_damaging(0.999) TCGA-43-7656-01 2 139428848 139428848 G T NXPH2 Silent p.R147R 0.25 TCGA-43-7656-01 2 141259437 141259437 G T LRP1B Nonsense_Mutation p.S2890* 0.29 TCGA-43-7656-01 2 150427610 150427610 A T MMADHC Missense_Mutation p.S229T 0.35 tolerated(0.2) possibly_damaging(0.456) TCGA-43-7656-01 2 155566119 155566119 G T KCNJ3 Missense_Mutation p.R236L 0.19 deleterious(0) probably_damaging(0.986) TCGA-43-7656-01 2 159195563 159195563 A T CCDC148 Missense_Mutation p.F174Y 0.23 tolerated(0.19) possibly_damaging(0.682) TCGA-43-7656-01 2 166900259 166900259 C G SCN1A Missense_Mutation p.G655R 0.20 deleterious(0.02) probably_damaging(0.965) TCGA-43-7656-01 2 168096385 168096385 G A XIRP2 Silent p.Q293Q 0.21 TCGA-43-7656-01 2 168100194 168100194 G T XIRP2 Missense_Mutation p.K764N 0.22 probably_damaging(0.972) TCGA-43-7656-01 2 169938363 169938363 A G DHRS9 Missense_Mutation p.K91R 0.32 tolerated(0.2) benign(0.042) TCGA-43-7656-01 2 177033934 177033934 G T HOXD3 Missense_Mutation p.G31V 0.26 deleterious(0) probably_damaging(0.994) TCGA-43-7656-01 2 179330612 179330612 C A FKBP7 Missense_Mutation p.R185L 0.22 tolerated(0.12) possibly_damaging(0.504) TCGA-43-7656-01 2 179401100 179401100 A G TTN Silent p.I33458I 0.23 TCGA-43-7656-01 2 179407137 179407137 G T TTN Missense_Mutation p.P32449H 0.26 TCGA-43-7656-01 2 179636118 179636118 G T TTN Missense_Mutation p.P2646T 0.25 TCGA-43-7656-01 2 180310389 180310389 G T ZNF385B Missense_Mutation p.P328H 0.27 deleterious(0.01) possibly_damaging(0.759) TCGA-43-7656-01 2 196753077 196753077 G T DNAH7 Missense_Mutation p.P1771T 0.38 deleterious(0) probably_damaging(0.95) TCGA-43-7656-01 2 198948727 198948727 C A PLCL1 Silent p.A162A 0.39 TCGA-43-7656-01 2 207619880 207619880 C A MDH1B Missense_Mutation p.V255L 0.21 tolerated(0.06) benign(0.108) TCGA-43-7656-01 2 210560897 210560897 G T MAP2 Nonsense_Mutation p.E1335* 0.26 TCGA-43-7656-01 2 211540496 211540496 T A CPS1 Missense_Mutation p.N1408K 0.22 deleterious(0.04) benign(0.01) TCGA-43-7656-01 2 21228065 21228065 G A APOB Missense_Mutation p.P3892L 0.33 probably_damaging(0.999) TCGA-43-7656-01 2 217005990 217005990 A G XRCC5 Missense_Mutation p.D475G 0.29 deleterious(0.01) possibly_damaging(0.792) TCGA-43-7656-01 2 219894205 219894205 G T CCDC108 Missense_Mutation p.R524S 0.30 tolerated(0.52) benign(0.277) TCGA-43-7656-01 2 223554030 223554030 G T MOGAT1 Missense_Mutation p.G107V 0.23 deleterious(0) probably_damaging(0.994) TCGA-43-7656-01 2 228135577 228135577 C A COL4A3 Missense_Mutation p.P556Q 0.22 probably_damaging(0.997) TCGA-43-7656-01 2 230668814 230668814 G A TRIP12 Missense_Mutation p.P852L 0.22 deleterious(0) probably_damaging(0.914) TCGA-43-7656-01 2 232458261 232458261 C A C2orf57 Missense_Mutation p.P200Q 0.32 tolerated(0.19) benign(0.265) TCGA-43-7656-01 2 233075064 233075064 T A DIS3L2 Missense_Mutation p.S385T 0.25 tolerated(0.22) benign(0.1) TCGA-43-7656-01 2 234079218 234079218 A G INPP5D Missense_Mutation p.E611G 0.23 deleterious(0) probably_damaging(0.951) TCGA-43-7656-01 2 234526744 234526744 C T UGT1A8 Nonsense_Mutation p.R131* 0.28 TCGA-43-7656-01 2 242054329 242054329 G T PASK Intron 0.32 TCGA-43-7656-01 2 28627104 28627104 G T FOSL2 Missense_Mutation p.R78L 0.31 deleterious(0.04) benign(0.141) TCGA-43-7656-01 2 29274861 29274861 G T FAM179A Missense_Mutation p.D988Y 0.31 deleterious(0) benign(0.299) TCGA-43-7656-01 2 32475568 32475568 G C NLRC4 Silent p.L455L 0.24 TCGA-43-7656-01 2 44071680 44071680 A G ABCG8 Missense_Mutation p.D33G 0.20 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-43-7656-01 2 71740906 71740906 T C DYSF Missense_Mutation p.F205S 0.18 tolerated(0.42) benign(0.001) TCGA-43-7656-01 2 97399278 97399278 G A LMAN2L Missense_Mutation p.P162L 0.24 deleterious(0) probably_damaging(0.981) TCGA-43-7656-01 2 97526510 97526510 A G SEMA4C Silent p.N785N 0.29 TCGA-43-7656-01 3 100432603 100432603 C G TFG Missense_Mutation p.P25R 0.32 deleterious(0) probably_damaging(0.996) TCGA-43-7656-01 3 108351896 108351896 A G DZIP3 Missense_Mutation p.I265V 0.31 tolerated(0.05) benign(0.006) TCGA-43-7656-01 3 108474555 108474555 G C RETNLB 3'UTR 0.24 TCGA-43-7656-01 3 108698454 108698454 A T MORC1 Silent p.S795S 0.26 TCGA-43-7656-01 3 109050757 109050757 C A DPPA4 Silent p.R100R 0.25 TCGA-43-7656-01 3 116163872 116163872 T A LSAMP Missense_Mutation p.R3W 0.26 deleterious_low_confidence(0.02) benign(0.005) TCGA-43-7656-01 3 124380704 124380704 G T KALRN Missense_Mutation p.V183L 0.32 tolerated(0.11) benign(0.357) TCGA-43-7656-01 3 124385879 124385879 G C KALRN Missense_Mutation p.E275D 0.27 tolerated(0.11) benign(0.034) TCGA-43-7656-01 3 129017275 129017275 G A HMCES Missense_Mutation p.G178R 0.24 deleterious(0) probably_damaging(1) TCGA-43-7656-01 3 130188051 130188051 C A COL6A5 Silent p.T2401T 0.18 TCGA-43-7656-01 3 130284379 130284379 G C COL6A6 Missense_Mutation p.Q401H 0.28 tolerated(0.06) probably_damaging(0.909) TCGA-43-7656-01 3 132378497 132378497 C G ACAD11 Missense_Mutation p.L33F 0.39 deleterious(0.03) probably_damaging(0.944) TCGA-43-7656-01 3 13421162 13421162 C A NUP210 Nonsense_Mutation p.E293* 0.41 TCGA-43-7656-01 3 134670475 134670475 G T EPHB1 Missense_Mutation p.W129L 0.28 tolerated(0.13) possibly_damaging(0.859) TCGA-43-7656-01 3 134898739 134898739 T C EPHB1 Silent p.T599T 0.31 TCGA-43-7656-01 3 15071906 15071906 C G NR2C2 Missense_Mutation p.P372A 0.08 tolerated(0.18) benign(0.031) TCGA-43-7656-01 3 152880829 152880829 A G RAP2B Missense_Mutation p.N116S 0.25 deleterious(0.01) benign(0.097) TCGA-43-7656-01 3 155314127 155314127 C A PLCH1 Missense_Mutation p.M28I 0.20 deleterious(0) probably_damaging(0.995) TCGA-43-7656-01 3 164733752 164733752 G A SI Silent p.Y1292Y 0.29 TCGA-43-7656-01 3 184100438 184100438 C A CHRD Silent p.I286I 0.19 TCGA-43-7656-01 3 186504335 186504335 G A EIF4A2 Silent p.V224V 0.22 TCGA-43-7656-01 3 188956635 188956635 C T TPRG1 Missense_Mutation p.P139L 0.22 deleterious(0.02) benign(0.2) TCGA-43-7656-01 3 192516726 192516726 C T MB21D2 Missense_Mutation p.A309T 0.21 tolerated(0.14) possibly_damaging(0.796) TCGA-43-7656-01 3 195517798 195517798 G C MUC4 Missense_Mutation p.T218S 0.17 unknown(0) TCGA-43-7656-01 3 49693231 49693231 G A BSN Missense_Mutation p.G2081D 0.43 unknown(0) TCGA-43-7656-01 3 49693232 49693232 C G BSN Silent p.G2081G 0.45 TCGA-43-7656-01 4 103822401 103822401 A G SLC9B1 Missense_Mutation p.F474S 0.05 deleterious(0) probably_damaging(0.937) TCGA-43-7656-01 4 10445980 10445980 T C ZNF518B Missense_Mutation p.K658R 0.31 tolerated(0.3) probably_damaging(0.994) TCGA-43-7656-01 4 108935650 108935650 G T HADH Missense_Mutation p.V109F 0.44 deleterious(0) possibly_damaging(0.864) TCGA-43-7656-01 4 113970902 113970902 A G ANK2 Silent p.A6A 0.27 TCGA-43-7656-01 4 114824579 114824579 C G ARSJ Missense_Mutation p.M217I 0.24 tolerated(0.42) benign(0.004) TCGA-43-7656-01 4 119662139 119662139 C A SEC24D Missense_Mutation p.K683N 0.50 deleterious(0.03) probably_damaging(1) TCGA-43-7656-01 4 126370010 126370010 G A FAT4 Silent p.Q2613Q 0.27 TCGA-43-7656-01 4 13605265 13605265 C T BOD1L1 Missense_Mutation p.E1087K 0.33 possibly_damaging(0.848) TCGA-43-7656-01 4 145916513 145916513 C A ANAPC10 3'UTR 0.30 TCGA-43-7656-01 4 156283200 156283200 C A MAP9 Missense_Mutation p.D268Y 0.25 deleterious(0) probably_damaging(0.91) TCGA-43-7656-01 4 164394212 164394212 C A TKTL2 Missense_Mutation p.L225F 0.25 deleterious(0) probably_damaging(1) TCGA-43-7656-01 4 177114201 177114201 T A SPATA4 Missense_Mutation p.L125F 0.19 tolerated(0.06) probably_damaging(0.979) TCGA-43-7656-01 4 49006000 49006000 G C CWH43 Missense_Mutation p.V351L 0.43 tolerated(0.42) benign(0.011) TCGA-43-7656-01 4 53319 53319 C G ZNF595 5'UTR 0.18 TCGA-43-7656-01 4 66233143 66233143 C A EPHA5 Splice_Site p.X619_splice 0.28 TCGA-43-7656-01 4 76926016 76926016 A G CXCL9 Silent p.C74C 0.43 TCGA-43-7656-01 4 79434643 79434643 A G FRAS1 Missense_Mutation p.I3371V 0.33 benign(0.034) TCGA-43-7656-01 5 101631920 101631920 C A SLCO4C1 Missense_Mutation p.S16I 0.35 deleterious(0) probably_damaging(0.996) TCGA-43-7656-01 5 1089101 1089101 G T SLC12A7 Missense_Mutation p.T162K 0.16 tolerated(0.27) benign(0.315) TCGA-43-7656-01 5 131289985 131289985 G T ACSL6 Missense_Mutation p.P704H 0.41 deleterious(0.02) probably_damaging(0.952) TCGA-43-7656-01 5 13721161 13721161 C G DNAH5 Missense_Mutation p.G4076A 0.56 probably_damaging(0.939) TCGA-43-7656-01 5 140215374 140215374 C A PCDHA7 Missense_Mutation p.P469Q 0.44 deleterious_low_confidence(0.03) possibly_damaging(0.798) TCGA-43-7656-01 5 140557502 140557502 G C PCDHB8 5'UTR 0.06 TCGA-43-7656-01 5 140573455 140573455 G T PCDHB10 Missense_Mutation p.V444F 0.40 deleterious_low_confidence(0) benign(0.106) TCGA-43-7656-01 5 141041823 141041823 C A ARAP3 Splice_Site p.X934_splice 0.40 TCGA-43-7656-01 5 148431762 148431762 A T SH3TC2 Missense_Mutation p.C32S 0.34 tolerated(0.41) benign(0.001) TCGA-43-7656-01 5 156589583 156589583 C A FAM71B Missense_Mutation p.V565L 0.36 tolerated(0.12) benign(0.016) TCGA-43-7656-01 5 158585792 158585792 G A RNF145 Silent p.S656S 0.37 TCGA-43-7656-01 5 34935892 34935892 G A DNAJC21 Missense_Mutation p.R90H 0.30 tolerated(0.7) benign(0.002) TCGA-43-7656-01 5 35904617 35904617 G C CAPSL 3'UTR 0.38 TCGA-43-7656-01 5 37177739 37177740 - T C5orf42 Frame_Shift_Ins p.S1962Ifs*3 0.19 TCGA-43-7656-01 5 40909679 40909679 C A C7 5'UTR 0.15 TCGA-43-7656-01 5 78379657 78379657 A T BHMT2 Missense_Mutation p.T330S 0.36 deleterious(0.01) benign(0.028) TCGA-43-7656-01 5 7889305 7889305 G T MTRR Missense_Mutation p.R442L 0.20 tolerated(0.26) possibly_damaging(0.81) TCGA-43-7656-01 6 110948340 110948340 C T CDK19 Missense_Mutation p.A219T 0.22 deleterious(0) probably_damaging(0.997) TCGA-43-7656-01 6 123376990 123376990 C G CLVS2 Missense_Mutation p.L239V 0.27 tolerated(0.46) benign(0.439) TCGA-43-7656-01 6 132032036 132032036 G T CTAGE9 Nonsense_Mutation p.S41* 0.30 TCGA-43-7656-01 6 133105193 133105193 T C SLC18B1 Missense_Mutation p.I179M 0.28 tolerated(0.5) benign(0.029) TCGA-43-7656-01 6 146678688 146678688 C A GRM1 Missense_Mutation p.T487N 0.30 tolerated(0.12) benign(0.001) TCGA-43-7656-01 6 152457782 152457782 G T SYNE1 Missense_Mutation p.L8544M 0.19 possibly_damaging(0.863) TCGA-43-7656-01 6 152464807 152464807 C T SYNE1 Missense_Mutation p.R8357H 0.16 benign(0.006) TCGA-43-7656-01 6 160913985 160913985 G A LPAL2 RNA 0.22 TCGA-43-7656-01 6 162683759 162683759 C A PARK2 Silent p.V70V 0.31 TCGA-43-7656-01 6 27419089 27419089 C T ZNF184 Missense_Mutation p.G750D 0.50 deleterious(0) benign(0.226) TCGA-43-7656-01 6 27839631 27839631 T A HIST1H3I 3'UTR 0.48 TCGA-43-7656-01 6 31779417 31779417 C T HSPA1L Silent p.G111G 0.48 TCGA-43-7656-01 6 32040066 32040066 G T TNXB Missense_Mutation p.P1564Q 0.81 possibly_damaging(0.902) TCGA-43-7656-01 6 33371297 33371297 G A KIFC1 Missense_Mutation p.V114I 0.08 tolerated(0.08) benign(0.044) TCGA-43-7656-01 6 39159115 39159115 G A KCNK5 Missense_Mutation p.R351W 0.31 deleterious(0) possibly_damaging(0.614) TCGA-43-7656-01 6 47645588 47645588 A G GPR111 Missense_Mutation p.K96E 0.36 tolerated_low_confidence(0.13) benign(0.004) TCGA-43-7656-01 6 47682864 47682864 G C GPR115 Missense_Mutation p.G628A 0.23 deleterious(0.02) possibly_damaging(0.559) TCGA-43-7656-01 6 49412358 49412358 C A MUT Missense_Mutation p.R557L 0.28 deleterious_low_confidence(0) possibly_damaging(0.751) TCGA-43-7656-01 6 50011442 50011442 T G DEFB112 Missense_Mutation p.N63T 0.15 tolerated(0.35) possibly_damaging(0.728) TCGA-43-7656-01 6 51907660 51907660 T A PKHD1 Missense_Mutation p.I1032F 0.17 deleterious(0.02) possibly_damaging(0.903) TCGA-43-7656-01 6 56467756 56467756 C A DST Intron 0.50 TCGA-43-7656-01 6 71011742 71011742 A T COL9A1 Missense_Mutation p.L17Q 0.30 unknown(0) TCGA-43-7656-01 6 72889449 72889449 C T RIMS1 Nonsense_Mutation p.R215* 0.08 TCGA-43-7656-01 6 74072822 74072822 G C KHDC3L Silent p.R58R 0.22 TCGA-43-7656-01 6 84311026 84311026 C G SNAP91 Missense_Mutation p.V430L 0.25 tolerated(0.32) unknown(0) TCGA-43-7656-01 6 88773921 88773921 T A SPACA1 Missense_Mutation p.F239I 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-43-7656-01 6 99849083 99849083 C A PNISR Missense_Mutation p.S584I 0.25 deleterious_low_confidence(0.03) possibly_damaging(0.607) TCGA-43-7656-01 7 100087055 100087055 G T NYAP1 Missense_Mutation p.G571W 0.20 deleterious(0) probably_damaging(0.996) TCGA-43-7656-01 7 100320388 100320389 - C EPO Frame_Shift_Ins p.L118Pfs*7 0.24 TCGA-43-7656-01 7 100417216 100417216 G C EPHB4 Silent p.V420V 0.23 TCGA-43-7656-01 7 100463440 100463440 G A SLC12A9 Missense_Mutation p.S653N 0.34 tolerated(0.52) benign(0.001) TCGA-43-7656-01 7 1024649 1024649 A G CYP2W1 Missense_Mutation p.H134R 0.29 tolerated(1) benign(0.013) TCGA-43-7656-01 7 107211654 107211654 G A DUS4L Missense_Mutation p.A61T 0.24 deleterious(0) probably_damaging(0.909) TCGA-43-7656-01 7 11452391 11452391 C A THSD7A Missense_Mutation p.D1192Y 0.28 tolerated(0.97) benign(0.014) TCGA-43-7656-01 7 128490856 128490856 G A FLNC Splice_Site p.X1800_splice 0.33 TCGA-43-7656-01 7 129945749 129945749 A T CPA4 Missense_Mutation p.T194S 0.24 tolerated(0.15) possibly_damaging(0.826) TCGA-43-7656-01 7 134136496 134136496 C A AKR1B1 Missense_Mutation p.G26W 0.27 deleterious(0) probably_damaging(0.958) TCGA-43-7656-01 7 143270249 143270249 A G CTAGE15 Missense_Mutation p.T447A 0.60 deleterious(0) probably_damaging(0.923) TCGA-43-7656-01 7 146829513 146829513 C T CNTNAP2 Silent p.G420G 0.30 TCGA-43-7656-01 7 151945178 151945178 C A KMT2C Missense_Mutation p.V781L 0.08 benign(0.003) TCGA-43-7656-01 7 154585821 154585821 C G DPP6 Missense_Mutation p.T390S 0.33 tolerated(0.6) possibly_damaging(0.618) TCGA-43-7656-01 7 155534589 155534589 G C RBM33 Missense_Mutation p.R709P 0.25 tolerated(0.05) unknown(0) TCGA-43-7656-01 7 158715138 158715138 C T WDR60 Silent p.P664P 0.35 TCGA-43-7656-01 7 27134938 27134938 T C HOXA1 Silent p.T198T 0.23 TCGA-43-7656-01 7 31682729 31682729 G T CCDC129 Missense_Mutation p.R608M 0.23 deleterious(0.01) probably_damaging(0.957) TCGA-43-7656-01 7 34697993 34697993 C A NPSR1 5'UTR 0.17 TCGA-43-7656-01 7 42079676 42079676 G C GLI3 Missense_Mutation p.A330G 0.27 tolerated(0.1) possibly_damaging(0.849) TCGA-43-7656-01 7 44272430 44272430 G A CAMK2B Silent p.D389D 0.28 TCGA-43-7656-01 7 48312456 48312456 C G ABCA13 Missense_Mutation p.L1065V 0.36 possibly_damaging(0.708) TCGA-43-7656-01 7 48316160 48316160 G T ABCA13 Missense_Mutation p.M2299I 0.18 benign(0.017) TCGA-43-7656-01 7 4900000 4900000 C T PAPOLB Missense_Mutation p.G480D 0.31 tolerated(0.46) benign(0) TCGA-43-7656-01 7 50468295 50468295 G T IKZF1 Silent p.T468T 0.25 TCGA-43-7656-01 7 64442386 64442386 T G ZNF117 5'UTR 0.33 TCGA-43-7656-01 7 66774660 66774660 G T STAG3L4 RNA 0.20 TCGA-43-7656-01 7 73609082 73609082 G C EIF4H Missense_Mutation p.D161H 0.13 deleterious(0.03) possibly_damaging(0.781) TCGA-43-7656-01 7 73609104 73609104 G A EIF4H Missense_Mutation p.G168D 0.16 tolerated(0.09) benign(0.034) TCGA-43-7656-01 7 76112119 76112119 C T DTX2 Missense_Mutation p.P188L 0.36 deleterious(0.03) benign(0.003) TCGA-43-7656-01 7 82545460 82545460 G T PCLO Missense_Mutation p.P3948T 0.28 unknown(0) TCGA-43-7656-01 7 82578904 82578904 G A PCLO Missense_Mutation p.A3667V 0.27 unknown(0) TCGA-43-7656-01 7 94054481 94054481 C T COL1A2 Missense_Mutation p.P909L 0.40 unknown(0) TCGA-43-7656-01 7 98575872 98575872 A T TRRAP Missense_Mutation p.K2801N 0.34 benign(0.322) TCGA-43-7656-01 7 99303026 99303026 G A CYP3A7 3'UTR 0.17 TCGA-43-7656-01 8 100515085 100515085 T C VPS13B Missense_Mutation p.L1355P 0.30 deleterious(0) probably_damaging(0.986) TCGA-43-7656-01 8 139255279 139255279 C A FAM135B Missense_Mutation p.G192V 0.26 deleterious(0.02) benign(0.41) TCGA-43-7656-01 8 139706768 139706768 C A COL22A1 Nonsense_Mutation p.G895* 0.32 TCGA-43-7656-01 8 139706769 139706769 C G COL22A1 Missense_Mutation p.Q894H 0.32 probably_damaging(0.996) TCGA-43-7656-01 8 1645313 1645313 G A DLGAP2 Missense_Mutation p.D853N 0.22 tolerated(0.98) probably_damaging(0.999) TCGA-43-7656-01 8 20004788 20004788 G T SLC18A1 Missense_Mutation p.P482Q 0.44 deleterious(0.01) probably_damaging(0.972) TCGA-43-7656-01 8 23225510 23225510 C T LOXL2 Missense_Mutation p.G119R 0.30 deleterious(0) probably_damaging(1) TCGA-43-7656-01 8 35583750 35583750 G T UNC5D Missense_Mutation p.D462Y 0.31 deleterious(0) probably_damaging(0.962) TCGA-43-7656-01 8 35624435 35624435 C A UNC5D Missense_Mutation p.R777S 0.27 deleterious(0.01) benign(0.341) TCGA-43-7656-01 8 39871152 39871152 A G IDO2 Missense_Mutation p.Y276C 0.39 deleterious(0.03) benign(0.412) TCGA-43-7656-01 8 57892624 57892624 C G IMPAD1 Missense_Mutation p.D174H 0.19 deleterious(0) probably_damaging(0.989) TCGA-43-7656-01 8 62555460 62555460 G C ASPH Silent p.V259V 0.29 TCGA-43-7656-01 8 67563757 67563757 T C VCPIP1 Silent p.A911A 0.21 TCGA-43-7656-01 8 99468211 99468211 T C STK3 Silent p.L473L 0.36 TCGA-43-7656-01 9 120053677 120053677 G A ASTN2 Silent p.A186A 0.37 TCGA-43-7656-01 9 131235306 131235306 C T ODF2 Silent p.I232I 0.35 TCGA-43-7656-01 9 135171361 135171361 G A SETX Missense_Mutation p.R2002C 0.42 deleterious(0) probably_damaging(1) TCGA-43-7656-01 9 138516060 138516060 A T GLT6D1 Missense_Mutation p.N238K 0.41 tolerated(0.09) benign(0.017) TCGA-43-7656-01 9 139369461 139369461 T A SEC16A Silent p.A869A 0.52 TCGA-43-7656-01 9 43627023 43627023 G C SPATA31A6 Missense_Mutation p.P555R 0.24 tolerated(0.11) possibly_damaging(0.613) TCGA-43-7656-01 9 90500278 90500278 G A SPATA31E1 Silent p.V292V 0.28 TCGA-43-7656-01 9 91690055 91690055 C A SHC3 Missense_Mutation p.S233I 0.52 deleterious(0) probably_damaging(0.999) TCGA-43-7656-01 X 107160751 107160751 C G MID2 Missense_Mutation p.S406C 0.04 tolerated(0.1) benign(0.004) TCGA-43-7656-01 X 142803786 142803786 C G SPANXN2 5'UTR 0.48 TCGA-43-7656-01 X 1742155 1742155 G T ASMT Missense_Mutation p.D65Y 0.27 deleterious(0) probably_damaging(0.974) TCGA-43-7656-01 X 26212175 26212175 G T MAGEB6 Missense_Mutation p.G71V 0.71 tolerated(0.12) benign(0.441) TCGA-43-7656-01 X 2779704 2779704 G T GYG2 Nonsense_Mutation p.E358* 0.55 TCGA-43-7656-01 X 27997744 27997744 C G DCAF8L1 Missense_Mutation p.E570Q 0.05 tolerated(0.34) benign(0.196) TCGA-43-7656-01 X 30254464 30254464 C A MAGEB3 Silent p.V141V 0.55 TCGA-43-7656-01 X 53423218 53423218 G C SMC1A Missense_Mutation p.Q931E 0.55 tolerated(0.17) benign(0.105) TCGA-43-7656-01 X 54783480 54783480 C G ITIH6 Silent p.L1009L 0.57 TCGA-43-7656-01 X 5811208 5811208 C A NLGN4X Missense_Mutation p.D701Y 0.58 deleterious(0) probably_damaging(0.996) TCGA-43-7656-01 X 73069586 73069586 G T XIST RNA 0.60 TCGA-43-7656-01 X 91131861 91131861 G T PCDH11X Missense_Mutation p.D208Y 0.55 deleterious(0) probably_damaging(1) TCGA-43-7656-01 X 91133480 91133480 C A PCDH11X Missense_Mutation p.H747Q 0.44 deleterious(0) probably_damaging(0.985) TCGA-43-7656-01 Y 21882903 21882903 C T KDM5D Nonsense_Mutation p.W524* 0.59 TCGA-43-7656-01 Y 4968284 4968284 C G PCDH11Y Missense_Mutation p.P889A 0.55 deleterious(0.04) possibly_damaging(0.801) TCGA-43-7657-01 10 117704348 117704348 C A ATRNL1 3'UTR 0.21 TCGA-43-7657-01 10 118138938 118138938 A T CCDC172 3'UTR 0.17 TCGA-43-7657-01 10 11911553 11911553 C A PROSER2 Silent p.P152P 0.23 TCGA-43-7657-01 10 27462110 27462110 G C MASTL Missense_Mutation p.V730L 0.28 deleterious(0.01) benign(0.01) TCGA-43-7657-01 10 31134061 31134061 G T ZNF438 Silent p.S772S 0.04 TCGA-43-7657-01 10 43692443 43692443 C T RASGEF1A Silent p.A443A 0.18 TCGA-43-7657-01 10 72493640 72493640 G T ADAMTS14 Splice_Site p.X406_splice 0.24 TCGA-43-7657-01 10 83635464 83635464 A T NRG3 Missense_Mutation p.K123M 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-43-7657-01 10 91144357 91144357 T C IFIT1B Silent p.C429C 0.35 TCGA-43-7657-01 11 123900510 123900510 C A OR10G8 Missense_Mutation p.L61I 0.09 deleterious(0) probably_damaging(0.998) TCGA-43-7657-01 11 55371268 55371268 G C OR4C11 Missense_Mutation p.N194K 0.25 deleterious(0.01) probably_damaging(0.992) TCGA-43-7657-01 11 55735225 55735225 C A OR10AG1 Missense_Mutation p.V239L 0.28 deleterious(0.01) possibly_damaging(0.788) TCGA-43-7657-01 11 55735816 55735816 T - OR10AG1 Frame_Shift_Del p.I42Ffs*24 0.20 TCGA-43-7657-01 11 56113512 56113512 A T OR8K1 5'UTR 0.53 TCGA-43-7657-01 11 88386416 88386416 T G GRM5 Missense_Mutation p.Q356P 0.22 tolerated(1) benign(0.003) TCGA-43-7657-01 12 104084210 104084210 T C STAB2 Missense_Mutation p.M1064T 0.30 tolerated(0.21) benign(0.001) TCGA-43-7657-01 12 106740123 106740123 A G TCP11L2 Missense_Mutation p.M459V 0.26 tolerated(0.3) benign(0.005) TCGA-43-7657-01 12 113444405 113444405 G C OAS2 Missense_Mutation p.E552D 0.17 deleterious(0.05) benign(0.281) TCGA-43-7657-01 12 20876113 20876113 G A SLCO1C1 Missense_Mutation p.G371S 0.19 tolerated(0.09) probably_damaging(0.999) TCGA-43-7657-01 12 40114805 40114805 T A C12orf40 Missense_Mutation p.C571S 0.12 tolerated(0.45) benign(0.204) TCGA-43-7657-01 12 53586142 53586142 C T ITGB7 Silent p.T709T 0.34 TCGA-43-7657-01 12 54404909 54404909 G A HOXC8 Missense_Mutation p.R158Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-43-7657-01 12 81110795 81110795 C T MYF5 5'UTR 0.32 TCGA-43-7657-01 12 94806256 94806256 C A CCDC41 Missense_Mutation p.S4I 0.28 deleterious_low_confidence(0.04) benign(0.165) TCGA-43-7657-01 12 99007880 99007880 A G IKBIP Missense_Mutation p.I179T 0.21 deleterious(0) benign(0.073) TCGA-43-7657-01 13 24167536 24167536 A T TNFRSF19 Missense_Mutation p.D41V 0.58 deleterious(0) probably_damaging(0.964) TCGA-43-7657-01 13 72147027 72147027 G A DACH1 Missense_Mutation p.A417V 0.65 benign(0.387) TCGA-43-7657-01 14 101348257 101348257 G A RTL1 Silent p.L957L 0.40 TCGA-43-7657-01 14 34204519 34204519 T G NPAS3 Missense_Mutation p.I278S 0.35 deleterious(0) benign(0.003) TCGA-43-7657-01 14 34420043 34420043 G A EGLN3 5'UTR 0.42 TCGA-43-7657-01 14 52977963 52977963 G C TXNDC16 Missense_Mutation p.L251V 0.20 deleterious(0.03) benign(0.365) TCGA-43-7657-01 14 68024031 68024031 G C PLEKHH1 Missense_Mutation p.V79L 0.52 tolerated(0.21) benign(0.001) TCGA-43-7657-01 15 65495752 65495752 C T CILP Missense_Mutation p.V326M 0.20 deleterious(0) probably_damaging(0.999) TCGA-43-7657-01 16 11133735 11133735 T C CLEC16A Splice_Site p.X554_splice 0.20 TCGA-43-7657-01 16 27460663 27460663 G A IL21R 3'UTR 0.25 TCGA-43-7657-01 16 28845845 28845845 G A ATXN2L Missense_Mutation p.R755H 0.21 deleterious(0.02) benign(0.016) TCGA-43-7657-01 16 49670592 49670592 T A ZNF423 Missense_Mutation p.K824M 0.38 deleterious(0.01) probably_damaging(0.951) TCGA-43-7657-01 16 55360440 55360440 G T IRX6 Missense_Mutation p.A80S 0.27 tolerated(0.12) possibly_damaging(0.538) TCGA-43-7657-01 16 61854895 61854895 C T CDH8 Missense_Mutation p.G320R 0.19 deleterious(0.01) benign(0.011) TCGA-43-7657-01 16 72845559 72845559 G A ZFHX3 Missense_Mutation p.L1261F 0.10 benign(0.03) TCGA-43-7657-01 16 747116 747116 G T FBXL16 Missense_Mutation p.T97K 0.12 tolerated(0.64) benign(0.021) TCGA-43-7657-01 16 80718697 80718697 T C CDYL2 Silent p.K118K 0.26 TCGA-43-7657-01 17 10247274 10247274 G C MYH13 Missense_Mutation p.F579L 0.56 deleterious(0) probably_damaging(0.994) TCGA-43-7657-01 17 35771388 35771388 G C TADA2A 5'UTR 0.21 TCGA-43-7657-01 17 37871698 37871698 G T ERBB2 Splice_Site p.X408_splice 0.57 TCGA-43-7657-01 17 51900801 51900801 C A KIF2B Missense_Mutation p.P136H 0.06 deleterious(0.01) probably_damaging(0.982) TCGA-43-7657-01 17 78314108 78314108 A T RNF213 Missense_Mutation p.N1981Y 0.11 benign(0.002) TCGA-43-7657-01 18 3879724 3879724 G A DLGAP1 Silent p.R115R 0.30 TCGA-43-7657-01 18 5396236 5396236 G T EPB41L3 Missense_Mutation p.H979Q 0.28 tolerated(0.11) probably_damaging(0.95) TCGA-43-7657-01 18 9588194 9588194 C G PPP4R1 Missense_Mutation p.E160Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-43-7657-01 18 9887237 9887238 - C TXNDC2 Frame_Shift_Ins p.K256Qfs*28 0.16 TCGA-43-7657-01 19 20828051 20828051 T C ZNF626 Intron 0.54 TCGA-43-7657-01 19 43523073 43523073 G T PSG11 Missense_Mutation p.S186R 0.19 tolerated(0.06) benign(0.303) TCGA-43-7657-01 19 45976184 45976185 - TCTC FOSB Frame_Shift_Ins p.A313Lfs*13 0.13 TCGA-43-7657-01 19 51133334 51133334 G A SYT3 Silent p.L257L 0.16 TCGA-43-7657-01 19 54080627 54080627 C T ZNF331 Silent p.Y271Y 0.18 TCGA-43-7657-01 19 8922244 8922244 T A ZNF558 Missense_Mutation p.T308S 0.39 tolerated(0.1) possibly_damaging(0.779) TCGA-43-7657-01 1 101455998 101455998 T - DPH5 Frame_Shift_Del p.N275Ifs*53 0.23 TCGA-43-7657-01 1 13001331 13001331 C A PRAMEF6 Nonsense_Mutation p.E118* 0.06 TCGA-43-7657-01 1 205053058 205053058 C A TMEM81 Missense_Mutation p.D131Y 0.48 deleterious(0) probably_damaging(0.934) TCGA-43-7657-01 1 21299501 21299501 T C EIF4G3 Silent p.K146K 0.23 TCGA-43-7657-01 1 231935881 231935881 A G DISC1 Missense_Mutation p.T573A 0.10 tolerated(0.05) benign(0.334) TCGA-43-7657-01 1 243354628 243354628 G A CEP170 Missense_Mutation p.T267M 0.55 deleterious(0.04) benign(0.31) TCGA-43-7657-01 1 46495813 46495813 G A MAST2 Missense_Mutation p.R819Q 0.15 deleterious_low_confidence(0) possibly_damaging(0.903) TCGA-43-7657-01 1 74540377 74540377 T A LRRIQ3 Missense_Mutation p.K322I 0.25 deleterious(0.04) benign(0.217) TCGA-43-7657-01 1 7724686 7724686 G T CAMTA1 Missense_Mutation p.E693D 0.17 tolerated_low_confidence(0.34) probably_damaging(0.986) TCGA-43-7657-01 20 13797788 13797788 G A NDUFAF5 Missense_Mutation p.A324T 0.13 deleterious(0.03) probably_damaging(0.995) TCGA-43-7657-01 20 16359861 16359861 T G KIF16B Missense_Mutation p.E929A 0.20 tolerated_low_confidence(0.09) benign(0.105) TCGA-43-7657-01 20 20453545 20453545 G T RALGAPA2 Missense_Mutation p.P1808Q 0.06 deleterious(0) probably_damaging(0.975) TCGA-43-7657-01 20 36869232 36869232 G T KIAA1755 Missense_Mutation p.A434D 0.45 tolerated(0.09) probably_damaging(0.945) TCGA-43-7657-01 20 43034834 43034834 C A HNF4A Missense_Mutation p.F84L 0.59 deleterious(0) benign(0.009) TCGA-43-7657-01 20 57473997 57473997 G T GNAS Missense_Mutation p.G715C 0.43 deleterious(0) benign(0.219) TCGA-43-7657-01 20 62319519 62319519 G A RTEL1 Silent p.L565L 0.07 TCGA-43-7657-01 22 20918853 20918853 C T MED15 Nonsense_Mutation p.Q190* 0.20 TCGA-43-7657-01 22 29837579 29837579 C G RFPL1 Missense_Mutation p.S141C 0.32 deleterious(0) probably_damaging(0.996) TCGA-43-7657-01 2 102490659 102490659 G T MAP4K4 Missense_Mutation p.E917D 0.35 deleterious_low_confidence(0.01) probably_damaging(0.974) TCGA-43-7657-01 2 102490685 102490685 A C MAP4K4 Missense_Mutation p.N926T 0.24 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-43-7657-01 2 113786539 113786539 C A IL36B Missense_Mutation p.G80C 0.38 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-43-7657-01 2 160289311 160289311 A C BAZ2B Missense_Mutation p.D619E 0.08 benign(0.417) TCGA-43-7657-01 2 162279978 162279978 C G TBR1 Missense_Mutation p.S430C 0.14 deleterious(0.05) benign(0) TCGA-43-7657-01 2 164466298 164466298 C T FIGN Missense_Mutation p.V682I 0.07 deleterious(0.02) probably_damaging(0.959) TCGA-43-7657-01 2 179575864 179575864 G T TTN Missense_Mutation p.L9367I 0.38 TCGA-43-7657-01 2 202744824 202744824 G A CDK15 Missense_Mutation p.A378T 0.11 deleterious(0.01) probably_damaging(0.995) TCGA-43-7657-01 2 232323711 232323711 C G NCL Splice_Site p.X389_splice 0.13 TCGA-43-7657-01 2 233028197 233028197 G C DIS3L2 Missense_Mutation p.G327R 0.18 deleterious(0) probably_damaging(0.999) TCGA-43-7657-01 2 24929548 24929548 A G NCOA1 Silent p.S403S 0.34 TCGA-43-7657-01 2 44999339 44999339 G A CAMKMT 3'UTR 0.31 TCGA-43-7657-01 2 49190714 49190714 G A FSHR Silent p.L416L 0.18 TCGA-43-7657-01 2 71058308 71058308 T C CD207 Missense_Mutation p.N287S 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-43-7657-01 2 89117790 89117790 G A AC096579.13 Intron 0.13 TCGA-43-7657-01 2 99785834 99785834 C G MITD1 3'UTR 0.42 TCGA-43-7657-01 3 113658754 113658754 G T GRAMD1C Missense_Mutation p.L571F 0.31 deleterious(0) probably_damaging(0.999) TCGA-43-7657-01 3 138669308 138669308 T G C3orf72 Missense_Mutation p.L141R 0.06 deleterious_low_confidence(0.01) benign(0.066) TCGA-43-7657-01 3 142048401 142048401 C T XRN1 Missense_Mutation p.D1426N 0.05 tolerated_low_confidence(0.1) benign(0.083) TCGA-43-7657-01 3 147128775 147128775 C T ZIC1 Silent p.H292H 0.04 TCGA-43-7657-01 3 164709223 164709223 C A SI Missense_Mutation p.A1676S 0.70 deleterious(0.02) possibly_damaging(0.814) TCGA-43-7657-01 3 165547889 165547889 C T BCHE Silent p.G311G 0.09 TCGA-43-7657-01 3 191087771 191087771 C G CCDC50 Missense_Mutation p.P132A 0.31 deleterious(0.01) probably_damaging(0.962) TCGA-43-7657-01 3 46062678 46062678 C A XCR1 Missense_Mutation p.Q254H 0.46 tolerated(0.58) benign(0.002) TCGA-43-7657-01 3 46399303 46399303 C - CCR2 Frame_Shift_Del p.P96Hfs*39 0.30 TCGA-43-7657-01 3 58639460 58639460 A G FAM3D Missense_Mutation p.M21T 0.37 tolerated(0.07) benign(0.016) TCGA-43-7657-01 3 88040397 88040397 T C HTR1F Silent p.T166T 0.47 TCGA-43-7657-01 3 95374199 95374199 C A MTHFD2P1 RNA 0.23 TCGA-43-7657-01 4 156773439 156773439 T A ASIC5 Silent p.G205G 0.36 TCGA-43-7657-01 5 131705669 131705669 G T SLC22A5 Missense_Mutation p.R2L 0.13 tolerated(0.06) benign(0.006) TCGA-43-7657-01 5 140517422 140517422 G A PCDHB5 3'UTR 0.53 TCGA-43-7657-01 5 140762611 140762611 G A PCDHGA7 Missense_Mutation p.A49T 0.13 deleterious_low_confidence(0.03) benign(0.179) TCGA-43-7657-01 5 141243640 141243640 C G PCDH1 Silent p.L752L 0.47 TCGA-43-7657-01 5 156592826 156592826 C T FAM71B Silent p.E118E 0.55 TCGA-43-7657-01 5 180166130 180166130 G T OR2Y1 Nonsense_Mutation p.S310* 0.23 TCGA-43-7657-01 5 38407031 38407031 C T EGFLAM Silent p.P310P 0.10 TCGA-43-7657-01 5 6372521 6372521 C A MED10 3'UTR 0.27 TCGA-43-7657-01 5 90006797 90006797 G C GPR98 Splice_Site p.X2942_splice 0.46 TCGA-43-7657-01 6 112528319 112528319 G T LAMA4 Missense_Mutation p.H109N 0.13 tolerated(0.24) possibly_damaging(0.639) TCGA-43-7657-01 6 117237450 117237450 C A RFX6 Missense_Mutation p.F315L 0.34 tolerated(0.1) benign(0.119) TCGA-43-7657-01 6 152546898 152546898 T G SYNE1 Silent p.T7103T 0.14 TCGA-43-7657-01 6 155458394 155458394 A G TIAM2 Silent p.A426A 0.33 TCGA-43-7657-01 6 167590614 167590614 C A TCP10L2 Missense_Mutation p.P164T 0.12 tolerated(0.07) probably_damaging(0.935) TCGA-43-7657-01 6 29364735 29364735 C T OR12D2 Missense_Mutation p.H87Y 0.11 deleterious(0.05) benign(0.005) TCGA-43-7657-01 6 31778183 31778183 C A HSPA1L Missense_Mutation p.D523Y 0.14 deleterious_low_confidence(0) possibly_damaging(0.867) TCGA-43-7657-01 6 35773815 35773815 C G LHFPL5 Missense_Mutation p.T123R 0.14 deleterious(0.04) benign(0.413) TCGA-43-7657-01 6 97000488 97000488 G T UFL1 Nonsense_Mutation p.G706* 0.40 TCGA-43-7657-01 6 97730269 97730269 A G MMS22L Missense_Mutation p.F29L 0.13 deleterious(0) probably_damaging(0.979) TCGA-43-7657-01 7 100204175 100204175 C A PCOLCE Silent p.R288R 0.19 TCGA-43-7657-01 7 1028414 1028414 A G CYP2W1 Missense_Mutation p.M477V 0.28 tolerated(0.98) benign(0.026) TCGA-43-7657-01 7 103018180 103018180 G C SLC26A5 Missense_Mutation p.P618A 0.11 tolerated(0.55) benign(0.175) TCGA-43-7657-01 7 140051334 140051334 T C SLC37A3 Intron 0.29 TCGA-43-7657-01 7 143826940 143826940 C A OR2A14 Nonsense_Mutation p.C245* 0.39 TCGA-43-7657-01 7 2473440 2473440 G A CHST12 Missense_Mutation p.R389K 0.22 tolerated(0.05) probably_damaging(0.986) TCGA-43-7657-01 7 27211484 27211484 G A HOXA10 3'UTR 0.27 TCGA-43-7657-01 7 50611736 50611736 G A DDC Silent p.Y16Y 0.37 TCGA-43-7657-01 7 73753247 73753247 G T CLIP2 Missense_Mutation p.K197N 0.40 deleterious(0) probably_damaging(0.954) TCGA-43-7657-01 7 88424012 88424012 C A C7orf62 Missense_Mutation p.G82V 0.17 deleterious(0.03) benign(0.195) TCGA-43-7657-01 7 98257906 98257906 G T NPTX2 Missense_Mutation p.V421L 0.15 tolerated(0.32) benign(0.002) TCGA-43-7657-01 8 105025828 105025828 C T RIMS2 Missense_Mutation p.P1068L 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-43-7657-01 8 121062014 121062014 G C DEPTOR 3'UTR 0.25 TCGA-43-7657-01 8 12957917 12957917 G A DLC1 Silent p.P643P 0.15 TCGA-43-7657-01 8 145625776 145625776 G C CPSF1 Silent p.T266T 0.21 TCGA-43-7657-01 8 33319033 33319033 C A FUT10 5'UTR 0.57 TCGA-43-7657-01 8 38677616 38677616 A G TACC1 Missense_Mutation p.Q285R 0.27 deleterious(0.05) benign(0.043) TCGA-43-7657-01 8 54960494 54960494 G A LYPLA1 3'UTR 0.14 TCGA-43-7657-01 8 86027608 86027608 A G LRRCC1 Splice_Site p.X241_splice 0.38 TCGA-43-7657-01 8 86250555 86250555 G T CA1 Missense_Mutation p.P54Q 0.13 tolerated(0.17) probably_damaging(0.939) TCGA-43-7657-01 9 116931353 116931353 G A COL27A1 Silent p.T506T 0.42 TCGA-43-7657-01 9 121930092 121930092 C T BRINP1 Missense_Mutation p.R519Q 0.48 deleterious(0.01) possibly_damaging(0.885) TCGA-43-7657-01 9 72131299 72131299 C A APBA1 Missense_Mutation p.E276D 0.30 deleterious_low_confidence(0) benign(0.272) TCGA-43-7657-01 9 84202661 84202661 T G TLE1 Missense_Mutation p.N638H 0.30 deleterious(0.01) probably_damaging(0.909) TCGA-43-7657-01 X 100381763 100381763 A T CENPI Silent p.S251S 0.16 TCGA-43-7657-01 X 100808564 100808564 A - ARMCX1 Frame_Shift_Del p.N218Mfs*8 0.27 TCGA-43-7657-01 X 102755643 102755643 C G RAB40A Silent p.L14L 0.23 TCGA-43-7657-01 X 111000821 111000821 T A ALG13 Nonsense_Mutation p.Y993* 0.24 TCGA-43-7657-01 X 129480548 129480548 G A SLC25A14 Missense_Mutation p.R67Q 0.25 deleterious(0) probably_damaging(1) TCGA-43-7657-01 X 130222641 130222641 G A ARHGAP36 Missense_Mutation p.R509H 0.19 tolerated(0.47) benign(0.001) TCGA-43-7657-01 X 134426389 134426389 T A ZNF75D Missense_Mutation p.H141L 0.29 tolerated(0.08) benign(0.018) TCGA-43-7657-01 X 135593594 135593594 G C HTATSF1 Missense_Mutation p.E564Q 0.09 tolerated_low_confidence(0.06) benign(0.147) TCGA-43-7657-01 X 140994769 140994769 C A MAGEC1 Missense_Mutation p.H527N 0.21 deleterious_low_confidence(0.02) benign(0.107) TCGA-43-7657-01 X 148693139 148693139 G T TMEM185A Missense_Mutation p.L16I 0.31 tolerated(0.33) possibly_damaging(0.646) TCGA-43-7657-01 X 150154638 150154638 G T HMGB3 Missense_Mutation p.D89Y 0.22 deleterious(0.01) probably_damaging(0.93) TCGA-43-7657-01 X 151303385 151303385 T G MAGEA10 Silent p.I236I 0.26 TCGA-43-7657-01 X 152968510 152968510 C G BCAP31 Missense_Mutation p.A228P 0.28 tolerated(0.22) possibly_damaging(0.828) TCGA-43-7657-01 X 23801432 23801432 G A SAT1 5'UTR 0.45 TCGA-43-7657-01 X 26212145 26212145 C A MAGEB6 Missense_Mutation p.P61H 0.17 deleterious(0.03) probably_damaging(0.975) TCGA-43-7657-01 X 30269655 30269655 G T MAGEB1 3'UTR 0.10 TCGA-43-7657-01 X 37553560 37553560 C G XK Missense_Mutation p.I89M 0.11 tolerated(0.13) possibly_damaging(0.836) TCGA-43-7657-01 X 49142328 49142328 A C PPP1R3F Silent p.A392A 0.39 TCGA-43-7657-01 X 67293063 67293063 T C OPHN1 Missense_Mutation p.I589V 0.38 tolerated(0.11) benign(0.338) TCGA-43-7657-01 X 71788635 71788635 A G HDAC8 Silent p.D88D 0.20 TCGA-43-7657-01 X 78010751 78010751 C T LPAR4 Missense_Mutation p.L129F 0.18 deleterious(0) probably_damaging(0.999) TCGA-43-7657-01 X 79947384 79947384 G T BRWD3 Missense_Mutation p.A1140D 0.33 tolerated(0.26) benign(0.022) TCGA-43-7657-01 X 91873538 91873538 C A PCDH11X Missense_Mutation p.Q1215K 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.718) TCGA-43-7658-01 10 106014675 106014675 C T GSTO1 5'UTR 0.92 TCGA-43-7658-01 10 108923989 108923989 A G SORCS1 Missense_Mutation p.M99T 0.77 tolerated_low_confidence(0.62) benign(0) TCGA-43-7658-01 10 118897567 118897567 T C VAX1 Translation_Start_Site p.M1? 0.67 deleterious_low_confidence(0) unknown(0) TCGA-43-7658-01 10 27335359 27335359 C A ANKRD26 Missense_Mutation p.K636N 0.31 deleterious(0.02) benign(0.229) TCGA-43-7658-01 10 43604511 43604511 G T RET Nonsense_Mutation p.E366* 0.31 TCGA-43-7658-01 10 58118026 58118026 C A ZWINT Intron 0.68 TCGA-43-7658-01 10 75885914 75885914 C G AP3M1 Missense_Mutation p.V335L 0.68 tolerated(0.09) benign(0.014) TCGA-43-7658-01 10 95557094 95557094 G T LGI1 Missense_Mutation p.S403I 0.28 deleterious(0) probably_damaging(0.998) TCGA-43-7658-01 11 1101089 1101089 C T MUC2 Silent p.P2496P 0.21 TCGA-43-7658-01 11 117391939 117391939 G A DSCAML1 Silent p.I433I 0.36 TCGA-43-7658-01 11 133801417 133801417 C G IGSF9B Missense_Mutation p.E433D 0.52 tolerated(0.06) possibly_damaging(0.574) TCGA-43-7658-01 11 1619061 1619061 G T KRTAP5-2 Silent p.P140P 0.48 TCGA-43-7658-01 11 209502 209502 C A RIC8A Missense_Mutation p.D76E 0.53 tolerated(0.06) probably_damaging(0.977) TCGA-43-7658-01 11 30930607 30930607 A G DCDC1 Silent p.N1268N 0.43 TCGA-43-7658-01 11 34118799 34118799 C T CAPRIN1 Nonsense_Mutation p.Q653* 0.47 TCGA-43-7658-01 11 34473739 34473739 C T CAT Silent p.I155I 0.24 TCGA-43-7658-01 11 47712038 47712038 G A AGBL2 Silent p.L407L 0.34 TCGA-43-7658-01 11 55579035 55579035 C T OR5L1 Silent p.F31F 0.50 TCGA-43-7658-01 11 55735494 55735494 C A OR10AG1 Missense_Mutation p.G149V 0.35 tolerated(0.05) benign(0.223) TCGA-43-7658-01 11 55860822 55860822 C T OR8I2 Silent p.I13I 0.43 TCGA-43-7658-01 11 57569523 57569523 C G CTNND1 Missense_Mutation p.H425Q 0.50 tolerated(0.1) probably_damaging(0.978) TCGA-43-7658-01 11 61490398 61490398 C T DAGLA Silent p.S125S 0.53 TCGA-43-7658-01 11 62570998 62570998 C T NXF1 Missense_Mutation p.D88N 0.25 tolerated(0.82) benign(0) TCGA-43-7658-01 11 64338495 64338495 T C SLC22A11 Missense_Mutation p.V545A 0.18 tolerated(0.17) benign(0.031) TCGA-43-7658-01 11 71850050 71850050 G T FOLR3 Missense_Mutation p.A114S 0.19 tolerated(0.17) benign(0.364) TCGA-43-7658-01 11 78443573 78443573 G A TENM4 Missense_Mutation p.R976W 0.22 deleterious(0) probably_damaging(1) TCGA-43-7658-01 11 82693222 82693222 A G RAB30 Silent p.C199C 0.27 TCGA-43-7658-01 11 86778832 86778832 G T TMEM135 Missense_Mutation p.A80S 0.44 tolerated(0.57) benign(0.013) TCGA-43-7658-01 11 92534556 92534556 G C FAT3 Missense_Mutation p.D2793H 0.07 probably_damaging(0.993) TCGA-43-7658-01 11 94039742 94039742 G C FOLR4 Missense_Mutation p.V68L 0.21 tolerated(0.31) benign(0.033) TCGA-43-7658-01 12 100994216 100994216 C A GAS2L3 Missense_Mutation p.H25Q 0.48 deleterious(0.02) probably_damaging(0.996) TCGA-43-7658-01 12 100994217 100994217 G C GAS2L3 Missense_Mutation p.G26R 0.46 deleterious(0.02) probably_damaging(1) TCGA-43-7658-01 12 108128200 108128200 G T PRDM4 Silent p.V731V 0.24 TCGA-43-7658-01 12 108589732 108589732 C T WSCD2 Silent p.G41G 0.23 TCGA-43-7658-01 12 13719984 13719984 G T GRIN2B Missense_Mutation p.P858H 0.51 deleterious(0.01) probably_damaging(0.99) TCGA-43-7658-01 12 21531241 21531241 C A IAPP Missense_Mutation p.H51N 0.16 tolerated(0.06) benign(0.076) TCGA-43-7658-01 12 27845784 27845784 C T PPFIBP1 Missense_Mutation p.A1002V 0.48 tolerated(0.06) benign(0.156) TCGA-43-7658-01 12 4479835 4479835 C A FGF23 Missense_Mutation p.A144S 0.33 tolerated(0.29) benign(0.205) TCGA-43-7658-01 12 48375791 48375791 G T COL2A1 Intron 0.18 TCGA-43-7658-01 12 48375806 48375806 G A COL2A1 Intron 0.21 TCGA-43-7658-01 12 48375849 48375849 G T COL2A1 Intron 0.12 TCGA-43-7658-01 12 49390465 49390465 G A DDN 3'UTR 0.25 TCGA-43-7658-01 12 49958571 49958571 C A MCRS1 Silent p.L145L 0.53 TCGA-43-7658-01 12 50048723 50048723 G A FMNL3 Silent p.F310F 0.05 TCGA-43-7658-01 12 51461550 51461550 G A CSRNP2 Missense_Mutation p.A205V 0.18 tolerated(0.07) probably_damaging(0.973) TCGA-43-7658-01 12 52778977 52778977 G A KRT84 Silent p.V131V 0.24 TCGA-43-7658-01 12 56094789 56094789 G A ITGA7 Silent p.P188P 0.27 TCGA-43-7658-01 12 9142285 9142285 C T KLRG1 Silent p.A18A 0.45 TCGA-43-7658-01 12 94618035 94618035 C T PLXNC1 Silent p.F578F 0.21 TCGA-43-7658-01 13 84454379 84454379 G C SLITRK1 Missense_Mutation p.L422V 0.26 deleterious(0) probably_damaging(0.958) TCGA-43-7658-01 13 92380812 92380812 A T GPC5 Silent p.V349V 0.94 TCGA-43-7658-01 13 95248468 95248468 G A TGDS 5'UTR 0.17 TCGA-43-7658-01 13 95860065 95860065 G C ABCC4 Silent p.T300T 0.05 TCGA-43-7658-01 14 20711810 20711810 T A OR11H4 Missense_Mutation p.V287E 0.66 deleterious(0) possibly_damaging(0.721) TCGA-43-7658-01 14 22356635 22356635 G C TRAV12-2 Missense_Mutation p.R98T 0.30 tolerated(0.94) benign(0.032) TCGA-43-7658-01 14 59965543 59965543 C G JKAMP Missense_Mutation p.S186C 0.78 deleterious(0.01) possibly_damaging(0.784) TCGA-43-7658-01 14 91007837 91007837 C A TTC7B Missense_Mutation p.G803W 0.15 deleterious(0) possibly_damaging(0.886) TCGA-43-7658-01 14 92189471 92189471 G A CATSPERB Silent p.F77F 0.19 TCGA-43-7658-01 15 23811187 23811187 G T MKRN3 Silent p.P86P 0.33 TCGA-43-7658-01 15 23890384 23890384 A T MAGEL2 Missense_Mutation p.W233R 0.59 deleterious(0) probably_damaging(0.998) TCGA-43-7658-01 15 25440105 25440105 G T SNORD115-14 RNA 0.40 TCGA-43-7658-01 15 45392950 45392950 C A DUOX2 Intron 0.53 TCGA-43-7658-01 15 79614528 79614528 G T TMED3 Missense_Mutation p.R209L 0.49 deleterious(0) possibly_damaging(0.866) TCGA-43-7658-01 15 85407722 85407722 G A ALPK3 Missense_Mutation p.A1719T 0.07 deleterious(0.01) probably_damaging(1) TCGA-43-7658-01 16 20331707 20331708 - A GP2 Frame_Shift_Ins p.L248Ffs*35 0.23 TCGA-43-7658-01 16 24802005 24802005 G C TNRC6A Missense_Mutation p.R681P 0.44 tolerated(0.14) benign(0.214) TCGA-43-7658-01 16 28856362 28856362 G T TUFM Silent p.G143G 0.17 TCGA-43-7658-01 16 30768255 30768255 G A PHKG2 Missense_Mutation p.C353Y 0.13 tolerated(0.14) probably_damaging(0.997) TCGA-43-7658-01 16 31471181 31471181 C T ARMC5 Silent p.S112S 0.77 TCGA-43-7658-01 16 3454576 3454576 G C ZNF174 Missense_Mutation p.D185H 0.26 deleterious(0.02) possibly_damaging(0.65) TCGA-43-7658-01 16 56866231 56866231 G T NUP93 Missense_Mutation p.D426Y 0.24 deleterious(0.01) possibly_damaging(0.763) TCGA-43-7658-01 17 10401967 10401967 C A MYH1 Missense_Mutation p.R1386L 0.69 deleterious(0.01) probably_damaging(0.99) TCGA-43-7658-01 17 34870381 34870381 T C MYO19 Missense_Mutation p.M210V 0.44 deleterious(0.02) benign(0.209) TCGA-43-7658-01 17 37339996 37339996 G C CACNB1 Missense_Mutation p.I340M 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-43-7658-01 17 42925485 42925485 T C HIGD1B 5'UTR 0.24 TCGA-43-7658-01 17 43213532 43213532 C G ACBD4 Missense_Mutation p.S7R 0.41 deleterious_low_confidence(0.02) benign(0.054) TCGA-43-7658-01 17 48072135 48072135 G A DLX3 Silent p.G76G 0.34 TCGA-43-7658-01 17 53398199 53398199 A C HLF Missense_Mutation p.N283H 0.10 deleterious(0) possibly_damaging(0.906) TCGA-43-7658-01 17 66918424 66918424 T G ABCA8 Missense_Mutation p.K487T 0.22 deleterious(0) possibly_damaging(0.45) TCGA-43-7658-01 17 7578457 7578457 C A TP53 Missense_Mutation p.R158L 0.75 deleterious(0) probably_damaging(0.986) TCGA-43-7658-01 17 8046714 8046714 G A PER1 Missense_Mutation p.P981L 0.74 deleterious(0) possibly_damaging(0.882) TCGA-43-7658-01 18 55020048 55020048 C A ST8SIA3 5'UTR 0.58 TCGA-43-7658-01 18 77475369 77475369 G A CTDP1 Missense_Mutation p.V637M 0.50 deleterious(0.01) probably_damaging(0.988) TCGA-43-7658-01 18 9533779 9533779 G A RALBP1 Silent p.L552L 0.29 TCGA-43-7658-01 19 15072831 15072831 C A SLC1A6 Silent p.L306L 0.42 TCGA-43-7658-01 19 17664314 17664314 C A FAM129C Missense_Mutation p.S679Y 0.25 deleterious_low_confidence(0.02) benign(0.005) TCGA-43-7658-01 19 31767777 31767777 G A TSHZ3 Silent p.P974P 0.16 TCGA-43-7658-01 19 36370104 36370104 C A APLP1 Missense_Mutation p.S614R 0.11 tolerated(0.05) probably_damaging(0.997) TCGA-43-7658-01 19 39292682 39292682 C A LGALS4 Nonsense_Mutation p.E259* 0.25 TCGA-43-7658-01 19 41135353 41135353 G A LTBP4 Silent p.A1590A 0.63 TCGA-43-7658-01 19 43349415 43349415 G A PSG10P RNA 0.04 TCGA-43-7658-01 19 44471076 44471076 T A ZNF221 Silent p.G474G 0.21 TCGA-43-7658-01 19 49686007 49686007 A G TRPM4 Missense_Mutation p.Q479R 0.42 tolerated(0.4) benign(0.007) TCGA-43-7658-01 19 49845841 49845841 G C TEAD2 Missense_Mutation p.R366G 0.22 deleterious(0.02) benign(0.07) TCGA-43-7658-01 19 51379757 51379757 A T KLK2 Missense_Mutation p.N79I 0.23 deleterious(0) probably_damaging(0.984) TCGA-43-7658-01 19 53958205 53958205 G T ZNF761 RNA 0.40 TCGA-43-7658-01 19 54418710 54418710 G A CACNG7 Silent p.P125P 0.32 TCGA-43-7658-01 19 55175851 55175851 G T LILRB4 Silent p.G190G 0.23 TCGA-43-7658-01 19 55493010 55493010 C A NLRP2 Silent p.V141V 0.15 TCGA-43-7658-01 19 5661612 5661612 G A SAFB Missense_Mutation p.R649Q 0.29 deleterious(0.02) unknown(0) TCGA-43-7658-01 19 58806440 58806441 - A ZNF8 Frame_Shift_Ins p.P424Afs*3 0.23 TCGA-43-7658-01 19 8131005 8131005 C T FBN3 Missense_Mutation p.R2743H 0.28 tolerated(1) benign(0.001) TCGA-43-7658-01 19 9083502 9083502 C A MUC16 Silent p.T2771T 0.48 TCGA-43-7658-01 19 9296792 9296792 C T OR7D2 Missense_Mutation p.T112M 0.10 deleterious_low_confidence(0.03) possibly_damaging(0.696) TCGA-43-7658-01 19 9324858 9324858 G T OR7D4 Missense_Mutation p.S219Y 0.53 tolerated(0.06) possibly_damaging(0.649) TCGA-43-7658-01 1 110766144 110766144 C T KCNC4 Missense_Mutation p.R413W 0.28 deleterious(0.02) possibly_damaging(0.899) TCGA-43-7658-01 1 145368448 145368448 G C NBPF10 Missense_Mutation p.G3476R 0.26 benign(0.003) TCGA-43-7658-01 1 150128284 150128284 G T PLEKHO1 Nonsense_Mutation p.E68* 0.82 TCGA-43-7658-01 1 152281214 152281214 G T FLG Missense_Mutation p.H2050N 0.49 benign(0.322) TCGA-43-7658-01 1 153617813 153617813 G A CHTOP 3'UTR 0.14 TCGA-43-7658-01 1 167400808 167400808 G T CD247 3'UTR 0.58 TCGA-43-7658-01 1 169513671 169513671 C A F5 Missense_Mutation p.C613F 0.67 deleterious(0.02) probably_damaging(1) TCGA-43-7658-01 1 17257012 17257012 C G CROCC Missense_Mutation p.R258G 0.07 possibly_damaging(0.888) TCGA-43-7658-01 1 186037029 186037029 A G HMCN1 Missense_Mutation p.N2590S 0.08 probably_damaging(0.996) TCGA-43-7658-01 1 198718565 198718565 C A PTPRC Missense_Mutation p.L987I 0.26 tolerated(0.6) possibly_damaging(0.823) TCGA-43-7658-01 1 203452909 203452909 C A PRELP Silent p.L199L 0.24 TCGA-43-7658-01 1 204110495 204110495 C T ETNK2 Silent p.V244V 0.12 TCGA-43-7658-01 1 207896982 207896982 A G CR1L Missense_Mutation p.I554M 0.18 tolerated(0.13) benign(0.257) TCGA-43-7658-01 1 214537919 214537919 C A PTPN14 Missense_Mutation p.G1124V 0.43 deleterious(0) probably_damaging(1) TCGA-43-7658-01 1 227935616 227935616 C G SNAP47 Missense_Mutation p.A105G 0.21 deleterious(0.04) benign(0.304) TCGA-43-7658-01 1 229568453 229568453 C A ACTA1 Nonsense_Mutation p.E102* 0.45 TCGA-43-7658-01 1 233802459 233802459 G T KCNK1 Silent p.V158V 0.21 TCGA-43-7658-01 1 235926046 235926046 G T LYST Missense_Mutation p.S2076Y 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.448) TCGA-43-7658-01 1 243434358 243434358 C - SDCCAG8 Frame_Shift_Del p.L102* 0.23 TCGA-43-7658-01 1 247920964 247920964 C T OR1C1 Missense_Mutation p.V249M 0.19 tolerated(0.07) benign(0.037) TCGA-43-7658-01 1 248202320 248202320 T A OR2L2 Missense_Mutation p.Y251N 0.21 deleterious(0) benign(0.337) TCGA-43-7658-01 1 248737364 248737364 C A OR2T34 Missense_Mutation p.R232M 0.27 deleterious(0) possibly_damaging(0.905) TCGA-43-7658-01 1 33276655 33276655 C A YARS Missense_Mutation p.V21F 0.37 deleterious(0.02) possibly_damaging(0.566) TCGA-43-7658-01 1 43904393 43904393 G T SZT2 Missense_Mutation p.V2121L 0.23 deleterious(0.01) possibly_damaging(0.866) TCGA-43-7658-01 1 46597591 46597591 C T PIK3R3 Missense_Mutation p.D12N 0.18 deleterious_low_confidence(0.04) benign(0.101) TCGA-43-7658-01 1 62190648 62190648 C T TM2D1 Missense_Mutation p.E111K 0.16 tolerated(0.07) benign(0.104) TCGA-43-7658-01 1 68947156 68947156 G A DEPDC1 Silent p.P634P 0.28 TCGA-43-7658-01 1 75685004 75685004 C A SLC44A5 Missense_Mutation p.V402L 0.48 tolerated(0.15) possibly_damaging(0.457) TCGA-43-7658-01 1 985813 985813 G A AGRN Silent p.K1661K 0.24 TCGA-43-7658-01 20 1161996 1161996 C T TMEM74B Silent p.G89G 0.22 TCGA-43-7658-01 20 20278880 20278880 T G C20orf26 Missense_Mutation p.I1091S 0.43 deleterious(0) possibly_damaging(0.782) TCGA-43-7658-01 20 2597741 2597741 G A TMC2 Missense_Mutation p.G655D 0.36 tolerated(0.07) probably_damaging(0.999) TCGA-43-7658-01 20 33735010 33735010 G A EDEM2 Nonsense_Mutation p.Q18* 0.14 TCGA-43-7658-01 20 3627518 3627518 C T ATRN 3'UTR 0.14 TCGA-43-7658-01 20 47267949 47267949 G A PREX1 Silent p.F880F 0.11 TCGA-43-7658-01 20 57599301 57599301 C T TUBB1 Silent p.L273L 0.12 TCGA-43-7658-01 20 57829452 57829452 A C ZNF831 Missense_Mutation p.E1563A 0.28 deleterious(0.03) benign(0.024) TCGA-43-7658-01 20 77143 77143 C T DEFB125 3'UTR 0.43 TCGA-43-7658-01 21 42694928 42694928 C T FAM3B Missense_Mutation p.P33L 0.24 deleterious(0) probably_damaging(0.97) TCGA-43-7658-01 22 30683184 30683184 C A GATSL3 Silent p.T155T 0.40 TCGA-43-7658-01 22 38212309 38212309 G T GCAT Silent p.A389A 0.32 TCGA-43-7658-01 22 44564486 44564486 G T PARVB Silent p.V374V 0.22 TCGA-43-7658-01 2 101183090 101183090 G T PDCL3 Silent p.V44V 0.16 TCGA-43-7658-01 2 105897111 105897111 G A TGFBRAP1 Silent p.F397F 0.29 TCGA-43-7658-01 2 105900823 105900823 T C TGFBRAP1 Silent p.G357G 0.28 TCGA-43-7658-01 2 106761733 106761733 C A UXS1 Missense_Mutation p.G129C 0.56 deleterious(0) probably_damaging(1) TCGA-43-7658-01 2 128367150 128367150 G T MYO7B Nonsense_Mutation p.E962* 0.21 TCGA-43-7658-01 2 136437758 136437758 G A R3HDM1 Missense_Mutation p.G740S 0.45 tolerated(0.05) benign(0.024) TCGA-43-7658-01 2 152108052 152108052 C A RBM43 Nonsense_Mutation p.G148* 0.30 TCGA-43-7658-01 2 167992568 167992568 T C XIRP2 Silent p.F186F 0.53 TCGA-43-7658-01 2 170033090 170033090 G A LRP2 Missense_Mutation p.P3468S 0.67 probably_damaging(0.973) TCGA-43-7658-01 2 179417034 179417034 T C TTN Missense_Mutation p.H30198R 0.20 TCGA-43-7658-01 2 179433065 179433065 C A TTN Missense_Mutation p.D25932Y 0.24 TCGA-43-7658-01 2 179574518 179574518 A T TTN Missense_Mutation p.S9510T 0.21 TCGA-43-7658-01 2 185803585 185803585 G T ZNF804A Missense_Mutation p.R1154S 0.21 deleterious(0.01) probably_damaging(0.95) TCGA-43-7658-01 2 196822037 196822037 C T DNAH7 Missense_Mutation p.R1009Q 0.05 tolerated(0.19) possibly_damaging(0.595) TCGA-43-7658-01 2 216916192 216916192 G A PECR Missense_Mutation p.R195W 0.14 deleterious(0) probably_damaging(1) TCGA-43-7658-01 2 229890796 229890796 G T PID1 Missense_Mutation p.T100N 0.14 tolerated(0.22) benign(0.421) TCGA-43-7658-01 2 241622101 241622101 G A AQP12B Silent p.L52L 0.58 TCGA-43-7658-01 2 27424557 27424557 C A SLC5A6 Silent p.L507L 0.44 TCGA-43-7658-01 2 27604371 27604371 T C PPM1G 3'UTR 0.42 TCGA-43-7658-01 2 29295440 29295440 T C C2orf71 Missense_Mutation p.D563G 0.49 deleterious(0.03) benign(0.149) TCGA-43-7658-01 2 70451735 70451735 G A TIA1 Missense_Mutation p.A142V 0.34 tolerated(0.15) benign(0.035) TCGA-43-7658-01 2 71360671 71360671 G A MPHOSPH10 Missense_Mutation p.D245N 0.37 tolerated(0.08) benign(0.202) TCGA-43-7658-01 2 9658364 9658364 C A ADAM17 Missense_Mutation p.D324Y 0.36 deleterious(0) probably_damaging(1) TCGA-43-7658-01 3 108818251 108818251 C T MORC1 Missense_Mutation p.C126Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-43-7658-01 3 113342500 113342500 C T SIDT1 Missense_Mutation p.P743S 0.29 tolerated(0.11) benign(0.395) TCGA-43-7658-01 3 114069307 114069307 C A ZBTB20 Missense_Mutation p.V540L 0.20 tolerated(0.15) possibly_damaging(0.785) TCGA-43-7658-01 3 126070739 126070739 G A KLF15 Missense_Mutation p.R343C 0.08 deleterious(0.01) probably_damaging(1) TCGA-43-7658-01 3 126071222 126071222 G A KLF15 Missense_Mutation p.L182F 0.26 tolerated(0.18) benign(0.249) TCGA-43-7658-01 3 169890478 169890478 C T PHC3 Missense_Mutation p.R68Q 0.23 deleterious(0) probably_damaging(0.975) TCGA-43-7658-01 3 172052789 172052789 C G FNDC3B Missense_Mutation p.T566R 0.17 deleterious(0.03) benign(0.174) TCGA-43-7658-01 3 178560533 178560533 C G KCNMB2 Missense_Mutation p.F172L 0.05 tolerated(0.11) probably_damaging(0.987) TCGA-43-7658-01 3 180359865 180359865 T A CCDC39 Missense_Mutation p.E597V 0.31 tolerated(0.12) benign(0.211) TCGA-43-7658-01 3 182662952 182662952 G A DCUN1D1 Missense_Mutation p.P237L 0.10 deleterious(0) probably_damaging(1) TCGA-43-7658-01 3 184100488 184100488 T C CHRD Missense_Mutation p.L303P 0.04 deleterious(0) probably_damaging(1) TCGA-43-7658-01 3 186954298 186954298 C A MASP1 Missense_Mutation p.R454L 0.29 deleterious(0) possibly_damaging(0.511) TCGA-43-7658-01 3 190127905 190127905 G A CLDN16 3'UTR 0.32 TCGA-43-7658-01 3 75482000 75482000 C T RP11-803B1.8 5'Flank 0.11 TCGA-43-7658-01 3 77147278 77147278 A G ROBO2 Missense_Mutation p.T75A 0.68 tolerated(0.5) unknown(0) TCGA-43-7658-01 4 106156874 106156874 A C TET2 Missense_Mutation p.Y592S 0.34 tolerated(0.24) benign(0.024) TCGA-43-7658-01 4 126370102 126370102 G T FAT4 Missense_Mutation p.G2644V 0.47 benign(0.232) TCGA-43-7658-01 4 164415871 164415871 T G TMA16 5'UTR 0.27 TCGA-43-7658-01 4 189068460 189068460 C A TRIML1 Silent p.P447P 0.39 TCGA-43-7658-01 4 38829326 38829326 G C TLR6 Missense_Mutation p.T590S 0.58 deleterious(0.02) benign(0.023) TCGA-43-7658-01 4 39851225 39851225 T C PDS5A Missense_Mutation p.N1045S 0.32 tolerated(0.48) possibly_damaging(0.712) TCGA-43-7658-01 4 42965096 42965096 G A GRXCR1 Missense_Mutation p.R191Q 0.47 tolerated(0.25) possibly_damaging(0.659) TCGA-43-7658-01 4 54310229 54310229 G T FIP1L1 Missense_Mutation p.G415V 0.43 deleterious(0) probably_damaging(1) TCGA-43-7658-01 4 57797918 57797918 C T REST Missense_Mutation p.T965I 0.42 deleterious(0) benign(0.055) TCGA-43-7658-01 4 88732696 88732696 C A IBSP Missense_Mutation p.D196E 0.48 tolerated(0.52) benign(0.158) TCGA-43-7658-01 4 94377045 94377045 C A GRID2 Missense_Mutation p.P593Q 0.31 tolerated(0.07) possibly_damaging(0.707) TCGA-43-7658-01 5 122343612 122343612 C T SNX24 3'UTR 0.65 TCGA-43-7658-01 5 13701433 13701433 C A DNAH5 Missense_Mutation p.G4484V 0.13 probably_damaging(0.988) TCGA-43-7658-01 5 140554198 140554198 C T PCDHB7 Silent p.G594G 0.28 TCGA-43-7658-01 5 1420816 1420816 C T SLC6A3 Silent p.V265V 0.10 TCGA-43-7658-01 5 142689700 142689700 C T NR3C1 Missense_Mutation p.R478H 0.31 deleterious(0) probably_damaging(1) TCGA-43-7658-01 5 150946858 150946858 C T FAT2 Silent p.E545E 0.10 TCGA-43-7658-01 5 16670785 16670785 C T MYO10 Missense_Mutation p.M1911I 0.33 deleterious(0.04) benign(0.025) TCGA-43-7658-01 5 37816165 37816165 A T GDNF Missense_Mutation p.L92Q 0.22 tolerated(0.05) probably_damaging(0.992) TCGA-43-7658-01 5 38982105 38982105 C T RICTOR Missense_Mutation p.G206D 0.11 deleterious(0.01) possibly_damaging(0.792) TCGA-43-7658-01 6 110112732 110112732 C T FIG4 Silent p.P778P 0.48 TCGA-43-7658-01 6 132891980 132891980 G T TAAR6 Missense_Mutation p.D174Y 0.04 deleterious(0.02) benign(0.141) TCGA-43-7658-01 6 152652721 152652721 T A SYNE1 Missense_Mutation p.I4367F 0.46 benign(0.004) TCGA-43-7658-01 6 4892338 4892338 G A CDYL Missense_Mutation p.G139D 0.06 deleterious(0.01) probably_damaging(0.991) TCGA-43-7658-01 6 71236019 71236019 C G FAM135A Missense_Mutation p.Q1078E 0.14 tolerated(0.37) benign(0.027) TCGA-43-7658-01 6 73110336 73110336 C T RIMS1 Missense_Mutation p.P1667S 0.08 deleterious(0.02) benign(0.018) TCGA-43-7658-01 6 82930416 82930416 T C IBTK Missense_Mutation p.K380R 0.28 tolerated(0.18) benign(0.043) TCGA-43-7658-01 7 128607365 128607365 G T TNPO3 Missense_Mutation p.Q894K 0.63 deleterious(0) probably_damaging(1) TCGA-43-7658-01 7 137076055 137076055 G T DGKI Missense_Mutation p.Q1037K 0.25 tolerated(1) benign(0.169) TCGA-43-7658-01 7 138603593 138603593 T C KIAA1549 Missense_Mutation p.H260R 0.24 tolerated(0.26) benign(0.004) TCGA-43-7658-01 7 152498737 152498737 G - ACTR3B Frame_Shift_Del p.D87Ifs*25 0.21 TCGA-43-7658-01 7 156745281 156745281 T G NOM1 Silent p.G367G 0.41 TCGA-43-7658-01 7 44561322 44561322 G A NPC1L1 Missense_Mutation p.P981L 0.19 deleterious(0) probably_damaging(0.938) TCGA-43-7658-01 7 50737506 50737506 G A GRB10 Silent p.P139P 0.16 TCGA-43-7658-01 7 90042866 90042866 A G CLDN12 3'UTR 0.70 TCGA-43-7658-01 8 100779104 100779104 G A VPS13B Missense_Mutation p.D2410N 0.04 tolerated(0.09) possibly_damaging(0.811) TCGA-43-7658-01 8 139278023 139278023 T C FAM135B Missense_Mutation p.I74V 0.69 deleterious(0.02) benign(0.255) TCGA-43-7658-01 8 57025810 57025810 G T MOS Silent p.T244T 0.25 TCGA-43-7658-01 8 61754290 61754290 G T CHD7 Missense_Mutation p.D1541Y 0.25 probably_damaging(0.998) TCGA-43-7658-01 8 623836 623836 T G ERICH1 Missense_Mutation p.K172N 0.65 deleterious(0) possibly_damaging(0.899) TCGA-43-7658-01 8 70981538 70981538 G T PRDM14 Missense_Mutation p.N186K 0.25 tolerated(0.08) benign(0.115) TCGA-43-7658-01 9 100075614 100075614 C A CCDC180 Missense_Mutation p.A193E 0.13 tolerated(0.18) benign(0.366) TCGA-43-7658-01 9 100693288 100693288 T A HEMGN Missense_Mutation p.E130V 0.53 tolerated(0.08) benign(0.203) TCGA-43-7658-01 9 101706444 101706444 G A COL15A1 Silent p.R4R 0.50 TCGA-43-7658-01 9 123182083 123182083 A G CDK5RAP2 Missense_Mutation p.V1387A 0.32 tolerated(1) benign(0.002) TCGA-43-7658-01 9 123860835 123860835 G T CNTRL Nonsense_Mutation p.E265* 0.12 TCGA-43-7658-01 9 130474475 130474475 C A C9orf117 Intron 0.24 TCGA-43-7658-01 9 133498135 133498135 G A FUBP3 Missense_Mutation p.R271K 0.16 tolerated(0.21) benign(0.061) TCGA-43-7658-01 9 14804977 14804977 C A FREM1 Missense_Mutation p.D1150Y 0.46 deleterious(0) possibly_damaging(0.707) TCGA-43-7658-01 9 18770617 18770617 C A ADAMTSL1 Silent p.G745G 0.56 TCGA-43-7658-01 9 6506113 6506113 G C UHRF2 Missense_Mutation p.M781I 0.24 tolerated(0.07) possibly_damaging(0.577) TCGA-43-7658-01 9 84532506 84532506 G T SPATA31D5P RNA 0.35 TCGA-43-7658-01 9 84609509 84609509 G A SPATA31D1 Nonsense_Mutation p.W1375* 0.12 TCGA-43-7658-01 9 84609719 84609719 C A SPATA31D1 Missense_Mutation p.P1445Q 0.16 tolerated(0.55) benign(0.064) TCGA-43-7658-01 9 95796838 95796838 G A FGD3 Missense_Mutation p.D601N 0.57 tolerated(0.52) benign(0.193) TCGA-43-7658-01 9 96318803 96318803 A T FAM120A Missense_Mutation p.K805M 0.31 deleterious(0) probably_damaging(0.959) TCGA-43-7658-01 X 100912634 100912634 G A ARMCX2 5'UTR 0.39 TCGA-43-7658-01 X 103041630 103041630 G T PLP1 Missense_Mutation p.G143V 0.18 tolerated(0.16) possibly_damaging(0.865) TCGA-43-7658-01 X 103080701 103080701 G A RAB9B Missense_Mutation p.S5F 0.18 deleterious(0) possibly_damaging(0.839) TCGA-43-7658-01 X 118221191 118221191 G T KIAA1210 Silent p.S1334S 0.21 TCGA-43-7658-01 X 123196809 123196810 - T STAG2 Frame_Shift_Ins p.A568Cfs*20 0.38 TCGA-43-7658-01 X 134493814 134493814 C A ZNF449 Intron 0.12 TCGA-43-7658-01 X 135570487 135570487 T - BRS3 Frame_Shift_Del p.F73Sfs*26 0.10 TCGA-43-7658-01 X 140995547 140995547 C A MAGEC1 Missense_Mutation p.T786N 0.26 deleterious_low_confidence(0.01) benign(0.403) TCGA-43-7658-01 X 147003483 147003483 A G FMR1 Missense_Mutation p.I28M 0.26 deleterious(0) benign(0.153) TCGA-43-7658-01 X 14748410 14748410 G A GLRA2 Missense_Mutation p.A388T 0.44 tolerated(0.36) benign(0.006) TCGA-43-7658-01 X 148037409 148037409 C T AFF2 Missense_Mutation p.H612Y 0.28 tolerated(0.06) probably_damaging(0.992) TCGA-43-7658-01 X 151997739 151997739 C G CETN2 Missense_Mutation p.G82A 0.13 deleterious(0.01) benign(0.232) TCGA-43-7658-01 X 153195571 153195571 C - NAA10 Frame_Shift_Del p.A193Pfs*58 0.38 TCGA-43-7658-01 X 153924202 153924202 T A GAB3 Missense_Mutation p.Y507F 0.56 tolerated(0.17) possibly_damaging(0.452) TCGA-43-7658-01 X 155237251 155237251 T C IL9R Silent p.S317S 0.17 TCGA-43-7658-01 X 18622590 18622590 T A CDKL5 Missense_Mutation p.Y516N 0.42 deleterious_low_confidence(0) benign(0.168) TCGA-43-7658-01 X 21675340 21675340 C T KLHL34 Silent p.A189A 0.55 TCGA-43-7658-01 X 3239031 3239031 C G MXRA5 Missense_Mutation p.Q1565H 0.51 deleterious(0.04) benign(0.139) TCGA-43-7658-01 X 46884292 46884292 C A JADE3 Missense_Mutation p.L151I 0.33 tolerated(0.17) benign(0.345) TCGA-43-7658-01 X 47486922 47486922 G C CFP Missense_Mutation p.C174W 0.53 deleterious(0) probably_damaging(1) TCGA-43-7658-01 X 48319429 48319430 - A SLC38A5 Frame_Shift_Ins p.G299Wfs*130 0.11 TCGA-43-7658-01 X 50339889 50339889 G T SHROOM4 Missense_Mutation p.R1430S 0.39 deleterious(0.04) benign(0.019) TCGA-43-7658-01 X 54040902 54040902 C T PHF8 Missense_Mutation p.V267I 0.28 deleterious(0) probably_damaging(0.986) TCGA-43-7658-01 X 69644851 69644851 G T GDPD2 Missense_Mutation p.G6V 0.44 deleterious(0.01) benign(0.209) TCGA-43-7658-01 X 73064861 73064861 G C XIST RNA 0.54 TCGA-43-7658-01 X 83319257 83319257 C G RPS6KA6 3'UTR 0.44 TCGA-43-7658-01 X 91873757 91873757 G T PCDH11X Missense_Mutation p.G1288W 0.47 deleterious_low_confidence(0.02) probably_damaging(0.919) TCGA-43-7658-01 X 9862755 9862755 G T SHROOM2 Silent p.P269P 0.87 TCGA-43-7658-01 X 99662705 99662705 C A PCDH19 Silent p.L297L 0.45 TCGA-43-8115-01 10 108337017 108337017 G C SORCS1 Missense_Mutation p.Q1187E 0.16 tolerated(1) benign(0.004) TCGA-43-8115-01 10 116930950 116930950 A T ATRNL1 Silent p.A416A 0.18 TCGA-43-8115-01 10 127520142 127520142 C A BCCIP Missense_Mutation p.P189T 0.13 deleterious(0.03) possibly_damaging(0.525) TCGA-43-8115-01 10 37508138 37508138 G A ANKRD30A Silent p.G1110G 0.16 TCGA-43-8115-01 10 50872988 50872988 C T CHAT Missense_Mutation p.L715F 0.16 tolerated(0.06) possibly_damaging(0.547) TCGA-43-8115-01 10 68138955 68138955 A G CTNNA3 Missense_Mutation p.Y563H 0.21 deleterious(0) unknown(0) TCGA-43-8115-01 10 95380396 95380396 A G PDE6C Missense_Mutation p.H163R 0.16 tolerated(0.63) benign(0.016) TCGA-43-8115-01 11 114453694 114453694 G C NXPE4 Missense_Mutation p.S49C 0.05 tolerated(0.18) benign(0.258) TCGA-43-8115-01 11 121060519 121060519 G A TECTA Silent p.T2099T 0.05 TCGA-43-8115-01 11 1213648 1213648 G T MUC5AC RNA 0.27 TCGA-43-8115-01 11 123065652 123065652 G C CLMP 5'UTR 0.21 TCGA-43-8115-01 11 124120599 124120599 G T OR8G1 Missense_Mutation p.M59I 0.20 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-43-8115-01 11 124543584 124543584 T A SIAE Silent p.V7V 0.15 TCGA-43-8115-01 11 125281668 125281668 G T PKNOX2 Silent p.L281L 0.21 TCGA-43-8115-01 11 130078425 130078425 C G ST14 Missense_Mutation p.D705E 0.19 tolerated(0.2) benign(0.002) TCGA-43-8115-01 11 22396417 22396417 G A SLC17A6 Silent p.K386K 0.23 TCGA-43-8115-01 11 32636423 32636423 G C CCDC73 Missense_Mutation p.Q481E 0.18 deleterious(0.02) possibly_damaging(0.544) TCGA-43-8115-01 11 46724781 46724781 G A ZNF408 Missense_Mutation p.E214K 0.27 deleterious(0.05) benign(0.255) TCGA-43-8115-01 11 47741580 47741580 C A FNBP4 Missense_Mutation p.R955L 0.22 deleterious(0) probably_damaging(0.982) TCGA-43-8115-01 11 5269637 5269637 C A HBG1 Missense_Mutation p.Q132H 0.23 deleterious(0.02) probably_damaging(0.927) TCGA-43-8115-01 11 5530712 5530712 A T UBQLN3 Missense_Mutation p.V26E 0.12 deleterious(0) probably_damaging(0.998) TCGA-43-8115-01 11 56113585 56113585 C T OR8K1 Missense_Mutation p.T24I 0.06 deleterious_low_confidence(0.01) benign(0.213) TCGA-43-8115-01 11 60170448 60170448 A T MS4A14 Missense_Mutation p.T128S 0.17 tolerated(0.05) possibly_damaging(0.887) TCGA-43-8115-01 11 62259218 62259218 G C AHNAK Missense_Mutation p.S143C 0.26 deleterious_low_confidence(0) benign(0.058) TCGA-43-8115-01 11 65658787 65658787 T C CCDC85B Missense_Mutation p.L178P 0.15 tolerated(0.26) possibly_damaging(0.825) TCGA-43-8115-01 11 70332579 70332579 C T SHANK2 Silent p.L1274L 0.17 TCGA-43-8115-01 11 70338551 70338551 G T SHANK2 Silent p.V777V 0.20 TCGA-43-8115-01 12 109604727 109604727 C A ACACB Missense_Mutation p.H239N 0.15 tolerated(0.07) benign(0.141) TCGA-43-8115-01 12 11545881 11545881 A T PRB2 Silent p.P377P 0.06 TCGA-43-8115-01 12 120126043 120126043 T A CIT Silent p.S2068S 0.20 TCGA-43-8115-01 12 121098540 121098540 G A CABP1 Missense_Mutation p.G279D 0.13 deleterious(0.01) probably_damaging(1) TCGA-43-8115-01 12 121432027 121432027 C A HNF1A Silent p.L258L 0.24 TCGA-43-8115-01 12 130184738 130184738 C A TMEM132D Missense_Mutation p.E195D 0.33 deleterious(0.01) benign(0.162) TCGA-43-8115-01 12 132241053 132241053 T G SFSWAP Silent p.S528S 0.14 TCGA-43-8115-01 12 54974797 54974797 G A PPP1R1A Silent p.G147G 0.17 TCGA-43-8115-01 12 69968606 69968606 G T FRS2 Missense_Mutation p.R466S 0.15 deleterious(0.02) probably_damaging(0.996) TCGA-43-8115-01 12 86198716 86198716 C A RASSF9 Nonsense_Mutation p.E358* 0.16 TCGA-43-8115-01 12 9075318 9075318 G A PHC1 Silent p.A182A 0.45 TCGA-43-8115-01 13 101997730 101997730 C A NALCN Missense_Mutation p.C229F 0.07 deleterious(0) probably_damaging(1) TCGA-43-8115-01 13 108519001 108519001 C A FAM155A 5'UTR 0.12 TCGA-43-8115-01 13 49033957 49033957 G C RB1 Missense_Mutation p.R698S 0.20 deleterious(0) probably_damaging(1) TCGA-43-8115-01 13 51953629 51953629 A G INTS6 Missense_Mutation p.V452A 0.22 deleterious(0) benign(0.359) TCGA-43-8115-01 13 78178498 78178498 G C SCEL Missense_Mutation p.D369H 0.26 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-43-8115-01 13 99667822 99667822 C T DOCK9 Missense_Mutation p.R14H 0.13 deleterious_low_confidence(0.03) possibly_damaging(0.464) TCGA-43-8115-01 14 100118619 100118619 G A HHIPL1 Missense_Mutation p.R105H 0.30 deleterious(0) probably_damaging(1) TCGA-43-8115-01 14 20020003 20020003 C A POTEM Missense_Mutation p.R73M 0.06 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-43-8115-01 14 21551025 21551025 G T ARHGEF40 Missense_Mutation p.K1174N 0.10 deleterious(0) probably_damaging(0.999) TCGA-43-8115-01 14 23354548 23354548 G A REM2 Silent p.Q173Q 0.15 TCGA-43-8115-01 14 23888812 23888812 G C MYH7 Missense_Mutation p.L1245V 0.04 tolerated(0.11) benign(0.131) TCGA-43-8115-01 14 39782596 39782596 A G CTAGE5 Missense_Mutation p.K421E 0.28 deleterious(0.04) benign(0.22) TCGA-43-8115-01 14 58678078 58678078 G A ACTR10 Missense_Mutation p.M137I 0.24 deleterious(0.02) benign(0.002) TCGA-43-8115-01 14 59730170 59730170 A G DAAM1 5'Flank 0.26 TCGA-43-8115-01 14 59961818 59961818 G T JKAMP Missense_Mutation p.V112F 0.11 tolerated(0.3) possibly_damaging(0.691) TCGA-43-8115-01 14 67525501 67525501 G A GPHN Missense_Mutation p.R381Q 0.12 tolerated(0.38) benign(0.094) TCGA-43-8115-01 14 72943497 72943497 T C RGS6 Silent p.H247H 0.15 TCGA-43-8115-01 14 75469656 75469656 G C EIF2B2 5'UTR 0.21 TCGA-43-8115-01 14 79181420 79181420 G T NRXN3 Missense_Mutation p.G288V 0.17 deleterious(0) probably_damaging(1) TCGA-43-8115-01 14 91341695 91341695 A G RPS6KA5 Silent p.L616L 0.12 TCGA-43-8115-01 15 102194821 102194821 C T TARSL2 Silent p.R791R 0.13 TCGA-43-8115-01 15 30659634 30659634 T C CHRFAM7A Missense_Mutation p.K236R 0.09 tolerated(0.19) benign(0.072) TCGA-43-8115-01 15 31239349 31239349 C T MTMR10 Missense_Mutation p.R511Q 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-43-8115-01 15 42003522 42003522 C A MGA Missense_Mutation p.S1020Y 0.24 deleterious(0) probably_damaging(0.995) TCGA-43-8115-01 15 51294851 51294851 G A AP4E1 Missense_Mutation p.G1136R 0.21 tolerated_low_confidence(0.13) benign(0.393) TCGA-43-8115-01 15 52161528 52161529 AA - TMOD3 Frame_Shift_Del p.K81Rfs*35 0.21 TCGA-43-8115-01 15 64050506 64050506 A G HERC1 Silent p.G363G 0.12 TCGA-43-8115-01 15 64332444 64332444 A G DAPK2 Missense_Mutation p.M6T 0.23 deleterious(0.05) benign(0.09) TCGA-43-8115-01 15 66607385 66607385 G A DIS3L Missense_Mutation p.D276N 0.14 deleterious(0.02) possibly_damaging(0.843) TCGA-43-8115-01 15 75499117 75499117 C T C15orf39 Missense_Mutation p.S243F 0.16 deleterious(0.01) benign(0) TCGA-43-8115-01 16 27720218 27720218 C T KIAA0556 Missense_Mutation p.R528C 0.12 tolerated(1) benign(0.001) TCGA-43-8115-01 16 4391372 4391372 C G PAM16 Missense_Mutation p.Q74H 0.33 deleterious(0.01) probably_damaging(0.917) TCGA-43-8115-01 16 48119528 48119528 G T ABCC12 Silent p.A1268A 0.09 TCGA-43-8115-01 16 53296897 53296897 A G CHD9 Splice_Site p.X1404_splice 0.26 TCGA-43-8115-01 16 57714264 57714264 T A GPR97 Missense_Mutation p.F252Y 0.06 deleterious(0) possibly_damaging(0.828) TCGA-43-8115-01 16 58573676 58573676 T C CNOT1 Missense_Mutation p.Q1663R 0.15 tolerated(0.1) benign(0.271) TCGA-43-8115-01 16 67691669 67691669 C G ACD Missense_Mutation p.V518L 0.22 deleterious(0.03) benign(0.021) TCGA-43-8115-01 16 83378590 83378590 G C CDH13 Missense_Mutation p.V301L 0.14 deleterious(0.04) benign(0.351) TCGA-43-8115-01 17 18256999 18256999 A C SHMT1 Missense_Mutation p.Y77D 0.05 deleterious(0) probably_damaging(0.972) TCGA-43-8115-01 17 18257000 18257000 C A SHMT1 Silent p.G76G 0.04 TCGA-43-8115-01 17 33750011 33750011 C T SLFN12 Missense_Mutation p.E13K 0.22 deleterious(0) possibly_damaging(0.797) TCGA-43-8115-01 17 41052848 41052848 T A G6PC 5'UTR 0.50 TCGA-43-8115-01 17 59974871 59974871 T C INTS2 Missense_Mutation p.S493G 0.27 deleterious(0) benign(0.009) TCGA-43-8115-01 17 7578442 7578442 T C TP53 Missense_Mutation p.Y163C 0.26 deleterious(0) probably_damaging(0.999) TCGA-43-8115-01 18 14106216 14106216 C A ZNF519 Missense_Mutation p.S108I 0.18 deleterious(0.04) benign(0.008) TCGA-43-8115-01 18 28934537 28934537 T A DSG1 Missense_Mutation p.V793D 0.40 tolerated(0.51) benign(0.081) TCGA-43-8115-01 18 2925268 2925268 C T LPIN2 Missense_Mutation p.S631N 0.13 tolerated(0.24) benign(0.002) TCGA-43-8115-01 18 32455306 32455306 C A DTNA Missense_Mutation p.T529K 0.22 deleterious(0.03) benign(0.222) TCGA-43-8115-01 18 44260243 44260243 C T ST8SIA5 Missense_Mutation p.R298H 0.36 probably_damaging(0.999) TCGA-43-8115-01 18 60242004 60242004 A T ZCCHC2 Missense_Mutation p.N897I 0.24 deleterious_low_confidence(0) possibly_damaging(0.663) TCGA-43-8115-01 18 70205467 70205467 G T CBLN2 Missense_Mutation p.L207I 0.32 tolerated(0.2) probably_damaging(0.992) TCGA-43-8115-01 18 70451081 70451081 C A NETO1 Missense_Mutation p.V234L 0.21 tolerated(0.11) possibly_damaging(0.828) TCGA-43-8115-01 18 8394562 8394562 G T PTPRM Missense_Mutation p.A1433S 0.07 tolerated(0.15) possibly_damaging(0.66) TCGA-43-8115-01 18 9588749 9588750 - G PPP4R1 Frame_Shift_Ins p.L133Pfs*6 0.26 TCGA-43-8115-01 19 12911113 12911113 C A PRDX2 Missense_Mutation p.W86C 0.17 deleterious(0.01) probably_damaging(1) TCGA-43-8115-01 19 12969382 12969382 C T MAST1 Missense_Mutation p.R399C 0.27 deleterious(0) probably_damaging(0.998) TCGA-43-8115-01 19 15052808 15052808 A G OR7C2 Missense_Mutation p.T170A 0.14 tolerated_low_confidence(0.11) benign(0.02) TCGA-43-8115-01 19 19337453 19337453 A G NCAN Missense_Mutation p.S411G 0.25 deleterious(0.01) probably_damaging(0.97) TCGA-43-8115-01 19 37854029 37854029 A T HKR1 Silent p.T444T 0.19 TCGA-43-8115-01 19 40882682 40882682 G A PLD3 Splice_Site p.X395_splice 0.21 TCGA-43-8115-01 19 41430295 41430295 T C CYP2B7P RNA 0.20 TCGA-43-8115-01 19 43708270 43708270 A G PSG4 Silent p.I66I 0.14 TCGA-43-8115-01 19 43708291 43708291 G A PSG4 Silent p.P59P 0.11 TCGA-43-8115-01 19 44001234 44001234 C T PHLDB3 Intron 0.14 TCGA-43-8115-01 19 44514981 44514981 G T ZNF230 Missense_Mutation p.D264Y 0.23 tolerated(0.44) probably_damaging(0.96) TCGA-43-8115-01 19 45889089 45889089 G A PPP1R13L Missense_Mutation p.H692Y 0.17 deleterious(0) benign(0.219) TCGA-43-8115-01 19 49536461 49536461 C G CGB2 Missense_Mutation p.P159A 0.08 tolerated_low_confidence(0.14) probably_damaging(0.981) TCGA-43-8115-01 19 49539538 49539538 A T CGB1 Missense_Mutation p.L11Q 0.32 tolerated(0.29) possibly_damaging(0.883) TCGA-43-8115-01 19 50393665 50393665 C T IL4I1 Silent p.A344A 0.06 TCGA-43-8115-01 19 51362827 51362827 G T KLK3 Intron 0.08 TCGA-43-8115-01 19 51631240 51631240 C T SIGLEC9 Silent p.V350V 0.06 TCGA-43-8115-01 19 52033979 52033979 C A SIGLEC6 Missense_Mutation p.G221V 0.36 deleterious(0.02) possibly_damaging(0.689) TCGA-43-8115-01 19 55294987 55294987 C A KIR2DL1 Missense_Mutation p.S289R 0.26 tolerated(1) benign(0.001) TCGA-43-8115-01 19 56320183 56320183 A C NLRP11 Missense_Mutation p.V598G 0.06 deleterious(0) probably_damaging(0.942) TCGA-43-8115-01 19 57966875 57966875 A G VN1R1 Missense_Mutation p.M327T 0.48 tolerated(0.39) benign(0) TCGA-43-8115-01 19 58199127 58199127 G C ZNF551 Missense_Mutation p.R495T 0.05 deleterious(0.05) benign(0.107) TCGA-43-8115-01 19 6141551 6141551 T C ACSBG2 5'UTR 0.11 TCGA-43-8115-01 19 6417032 6417032 G C KHSRP Missense_Mutation p.A383G 0.12 deleterious(0.02) probably_damaging(0.967) TCGA-43-8115-01 1 103491460 103491460 A T COL11A1 Intron 0.12 TCGA-43-8115-01 1 150315791 150315791 A G PRPF3 Missense_Mutation p.N430S 0.18 tolerated(0.5) benign(0) TCGA-43-8115-01 1 152193358 152193358 A G HRNR Silent p.S249S 0.29 TCGA-43-8115-01 1 154246309 154246309 C T HAX1 Missense_Mutation p.R126W 0.06 deleterious(0.01) possibly_damaging(0.54) TCGA-43-8115-01 1 156670832 156670832 A C CRABP2 Missense_Mutation p.M28R 0.08 deleterious(0.03) benign(0.4) TCGA-43-8115-01 1 158225818 158225818 G A CD1A Missense_Mutation p.G117E 0.22 tolerated(0.13) benign(0.059) TCGA-43-8115-01 1 158390500 158390500 T A OR10K2 Missense_Mutation p.R53W 0.23 deleterious(0.03) probably_damaging(0.938) TCGA-43-8115-01 1 165513869 165513869 C G LRRC52 Missense_Mutation p.N112K 0.28 deleterious(0.05) possibly_damaging(0.588) TCGA-43-8115-01 1 169483550 169483550 T C F5 3'UTR 0.22 TCGA-43-8115-01 1 17328595 17328595 C A ATP13A2 Missense_Mutation p.K213N 0.37 deleterious(0.03) benign(0.342) TCGA-43-8115-01 1 175067645 175067645 T G TNN Missense_Mutation p.L678R 0.04 deleterious(0) probably_damaging(0.999) TCGA-43-8115-01 1 176983926 176983926 C A ASTN1 Splice_Site p.X508_splice 0.29 TCGA-43-8115-01 1 179338038 179338038 G T AXDND1 Silent p.L67L 0.09 TCGA-43-8115-01 1 203029441 203029441 C T PPFIA4 Missense_Mutation p.R388W 0.14 deleterious(0) probably_damaging(0.998) TCGA-43-8115-01 1 228509051 228509051 G T OBSCN Missense_Mutation p.A5794S 0.41 possibly_damaging(0.727) TCGA-43-8115-01 1 236966752 236966752 A T MTR Missense_Mutation p.D20V 0.23 deleterious(0.03) benign(0.017) TCGA-43-8115-01 1 238050857 238050857 G A ZP4 Silent p.T186T 0.10 TCGA-43-8115-01 1 31732928 31732928 C T SNRNP40 Silent p.E355E 0.12 TCGA-43-8115-01 1 35846933 35846933 C G ZMYM4 Missense_Mutation p.Q419E 0.08 deleterious(0.01) benign(0.148) TCGA-43-8115-01 1 41454346 41454346 G A CTPS1 Silent p.E173E 0.32 TCGA-43-8115-01 1 43885464 43885464 G T SZT2 Missense_Mutation p.M313I 0.12 deleterious(0.01) possibly_damaging(0.78) TCGA-43-8115-01 1 47735327 47735327 G A STIL Silent p.N865N 0.40 TCGA-43-8115-01 1 57395165 57395165 G A C8B Missense_Mutation p.T563I 0.36 deleterious(0.02) benign(0.162) TCGA-43-8115-01 1 70504769 70504769 C A LRRC7 Missense_Mutation p.P1050T 0.22 deleterious(0.04) possibly_damaging(0.606) TCGA-43-8115-01 1 75204406 75204406 C A TYW3 Silent p.A96A 0.16 TCGA-43-8115-01 1 86591753 86591753 T A COL24A1 Missense_Mutation p.Y89F 0.14 tolerated(0.28) benign(0.196) TCGA-43-8115-01 20 21687680 21687680 C A PAX1 Silent p.G297G 0.20 TCGA-43-8115-01 20 34526744 34526744 A G PHF20 Missense_Mutation p.Y809C 0.24 tolerated(0.14) benign(0.396) TCGA-43-8115-01 20 60835172 60835172 A G OSBPL2 Missense_Mutation p.Q58R 0.13 tolerated(0.3) benign(0.002) TCGA-43-8115-01 20 62044802 62044802 C T KCNQ2 Splice_Site p.X588_splice 0.12 TCGA-43-8115-01 20 62366011 62366011 G A ZGPAT Missense_Mutation p.A296T 0.29 tolerated(0.62) benign(0) TCGA-43-8115-01 21 45678487 45678487 G A DNMT3L Silent p.C145C 0.15 TCGA-43-8115-01 22 37688669 37688669 G T CYTH4 Silent p.A9A 0.16 TCGA-43-8115-01 22 41566523 41566523 A T EP300 Missense_Mutation p.Y1467F 0.31 probably_damaging(0.999) TCGA-43-8115-01 2 100055254 100055254 G A REV1 Missense_Mutation p.S341F 0.21 tolerated(0.07) benign(0.008) TCGA-43-8115-01 2 149227511 149227511 T C MBD5 Silent p.L667L 0.27 TCGA-43-8115-01 2 162868365 162868365 G T DPP4 Silent p.I590I 0.05 TCGA-43-8115-01 2 163124754 163124754 T G IFIH1 Missense_Mutation p.K884Q 0.38 tolerated(0.13) benign(0.022) TCGA-43-8115-01 2 179444838 179444838 T C TTN Silent p.Q22392Q 0.43 TCGA-43-8115-01 2 179455353 179455353 G A TTN Missense_Mutation p.R20367W 0.05 TCGA-43-8115-01 2 65237815 65237815 C G SLC1A4 Missense_Mutation p.L240V 0.04 deleterious(0) probably_damaging(0.999) TCGA-43-8115-01 2 68740257 68740257 A G APLF Silent p.P129P 0.40 TCGA-43-8115-01 2 90139471 90139471 C A IGKV1D-16 Missense_Mutation p.P81Q 0.13 deleterious(0) possibly_damaging(0.627) TCGA-43-8115-01 3 101520185 101520185 A T NXPE3 Missense_Mutation p.Q67L 0.19 tolerated(0.33) benign(0) TCGA-43-8115-01 3 127981015 127981015 G A EEFSEC Missense_Mutation p.G190E 0.17 deleterious(0) possibly_damaging(0.627) TCGA-43-8115-01 3 129290053 129290053 G A PLXND1 Missense_Mutation p.R1144W 0.15 tolerated(0.13) possibly_damaging(0.67) TCGA-43-8115-01 3 153202343 153202343 C A C3orf79 5'UTR 0.48 TCGA-43-8115-01 3 156745922 156745922 G C LEKR1 Missense_Mutation p.D467H 0.13 deleterious(0.01) probably_damaging(0.934) TCGA-43-8115-01 3 175520883 175520883 G A NAALADL2 Silent p.E760E 0.05 TCGA-43-8115-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.24 tolerated(0.11) possibly_damaging(0.529) TCGA-43-8115-01 3 186456920 186456920 C T KNG1 Silent p.F321F 0.15 TCGA-43-8115-01 3 187447567 187447567 G C BCL6 Missense_Mutation p.S209C 0.06 tolerated(0.07) benign(0.156) TCGA-43-8115-01 3 194062999 194062999 C T CPN2 Missense_Mutation p.A145T 0.06 tolerated(0.54) benign(0.079) TCGA-43-8115-01 3 194134490 194134490 C T ATP13A3 Missense_Mutation p.E1161K 0.12 deleterious(0.01) possibly_damaging(0.899) TCGA-43-8115-01 3 38926778 38926778 C A SCN11A Splice_Site p.X1022_splice 0.07 TCGA-43-8115-01 3 45872402 45872402 C G LZTFL1 Intron 0.26 TCGA-43-8115-01 4 146824038 146824038 G A ZNF827 Missense_Mutation p.R125W 0.27 deleterious(0) probably_damaging(0.996) TCGA-43-8115-01 4 166976263 166976263 G C TLL1 Silent p.L520L 0.36 TCGA-43-8115-01 4 17513626 17513626 C A QDPR Missense_Mutation p.G18C 0.28 deleterious(0) probably_damaging(1) TCGA-43-8115-01 4 55575692 55575692 T C KIT Silent p.N406N 0.21 TCGA-43-8115-01 4 55955940 55955940 T A KDR Silent p.P1074P 0.25 TCGA-43-8115-01 4 74363401 74363401 C A AFM Missense_Mutation p.S408R 0.25 deleterious(0) possibly_damaging(0.888) TCGA-43-8115-01 4 89052245 89052245 C A ABCG2 Nonsense_Mutation p.E167* 0.27 TCGA-43-8115-01 5 118183816 118183816 G T DTWD2 Missense_Mutation p.S232Y 0.15 deleterious(0) probably_damaging(0.974) TCGA-43-8115-01 5 118552603 118552603 C T DMXL1 Missense_Mutation p.A2624V 0.13 tolerated(0.1) benign(0.22) TCGA-43-8115-01 5 129037279 129037279 G A ADAMTS19 Nonsense_Mutation p.W1045* 0.06 TCGA-43-8115-01 5 129040001 129040013 GTCCTCTCTACCA - ADAMTS19 Frame_Shift_Del p.V1071Dfs*37 0.14 TCGA-43-8115-01 5 140595371 140595371 C T PCDHB13 Missense_Mutation p.P559L 0.09 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-43-8115-01 5 145439552 145439552 C G SH3RF2 Missense_Mutation p.P560R 0.20 deleterious(0.02) benign(0.09) TCGA-43-8115-01 5 149624823 149624823 G T CAMK2A Intron 0.40 TCGA-43-8115-01 5 175819913 175819913 C G CLTB Missense_Mutation p.K184N 0.07 tolerated(0.06) probably_damaging(0.995) TCGA-43-8115-01 5 178552016 178552016 G A ADAMTS2 Silent p.R972R 0.38 TCGA-43-8115-01 5 179320221 179320221 G A TBC1D9B Missense_Mutation p.S275L 0.05 deleterious(0) probably_damaging(0.999) TCGA-43-8115-01 5 180326318 180326318 T A BTNL8 Missense_Mutation p.L3H 0.11 deleterious(0.01) unknown(0) TCGA-43-8115-01 5 21752158 21752158 C A CDH12 Missense_Mutation p.R691S 0.23 tolerated(0.05) possibly_damaging(0.907) TCGA-43-8115-01 5 79030950 79030950 A G CMYA5 Missense_Mutation p.K2121R 0.31 benign(0.198) TCGA-43-8115-01 5 88100502 88100502 A G MEF2C Silent p.Y57Y 0.18 TCGA-43-8115-01 5 99871180 99871180 A C FAM174A 5'UTR 0.17 TCGA-43-8115-01 6 38565866 38565866 C A BTBD9 Missense_Mutation p.S2I 0.15 deleterious(0.01) unknown(0) TCGA-43-8115-01 6 7572076 7572076 G T DSP Silent p.V635V 0.48 TCGA-43-8115-01 7 100364686 100364686 G T ZAN Missense_Mutation p.A1556S 0.24 unknown(0) TCGA-43-8115-01 7 138601567 138601567 T C KIAA1549 Silent p.T935T 0.22 TCGA-43-8115-01 7 140301468 140301468 C A DENND2A Missense_Mutation p.D244Y 0.23 deleterious(0.01) benign(0.092) TCGA-43-8115-01 7 141750564 141750564 T A MGAM Missense_Mutation p.I902N 0.14 deleterious(0) probably_damaging(0.991) TCGA-43-8115-01 7 143175331 143175331 G T TAS2R41 Silent p.L122L 0.16 TCGA-43-8115-01 7 149544927 149544927 C T ZNF862 Silent p.L115L 0.25 TCGA-43-8115-01 7 151947994 151947994 T A KMT2C Missense_Mutation p.Q560L 0.19 benign(0.028) TCGA-43-8115-01 7 31683310 31683310 C A CCDC129 Missense_Mutation p.P802T 0.15 tolerated(0.18) benign(0.295) TCGA-43-8115-01 7 41729444 41729444 G A INHBA Missense_Mutation p.S362F 0.21 deleterious(0) probably_damaging(0.973) TCGA-43-8115-01 7 48312804 48312804 C G ABCA13 Missense_Mutation p.Q1181E 0.17 benign(0.004) TCGA-43-8115-01 7 53103762 53103762 C G POM121L12 Missense_Mutation p.T133S 0.25 deleterious(0.02) possibly_damaging(0.801) TCGA-43-8115-01 7 70255413 70255413 A G AUTS2 Missense_Mutation p.I1071V 0.21 tolerated(0.41) benign(0.029) TCGA-43-8115-01 7 71142206 71142206 A G WBSCR17 Missense_Mutation p.N472S 0.24 tolerated(1) benign(0.002) TCGA-43-8115-01 7 75988059 75988059 T C YWHAG Missense_Mutation p.M23V 0.25 deleterious_low_confidence(0) benign(0.168) TCGA-43-8115-01 7 81355294 81355294 A C HGF Silent p.S360S 0.24 TCGA-43-8115-01 7 92844914 92844914 A T HEPACAM2 Missense_Mutation p.V172E 0.17 deleterious(0) probably_damaging(0.972) TCGA-43-8115-01 8 101152920 101152920 C T FBXO43 Missense_Mutation p.S521N 0.29 tolerated(0.07) benign(0.077) TCGA-43-8115-01 8 104922389 104922389 A G RIMS2 Missense_Mutation p.H551R 0.15 tolerated_low_confidence(0.12) benign(0.078) TCGA-43-8115-01 8 105361136 105361136 A T DCSTAMP Missense_Mutation p.K119I 0.13 deleterious(0) possibly_damaging(0.864) TCGA-43-8115-01 8 113988374 113988374 G A CSMD3 Missense_Mutation p.S345F 0.21 tolerated(0.12) benign(0.008) TCGA-43-8115-01 8 11996003 11996003 G T USP17L2 Nonsense_Mutation p.C89* 0.27 TCGA-43-8115-01 8 133829198 133829198 C T PHF20L1 Missense_Mutation p.R417C 0.14 deleterious(0) probably_damaging(0.983) TCGA-43-8115-01 8 143599530 143599530 C T BAI1 Missense_Mutation p.T950M 0.21 deleterious(0.01) probably_damaging(0.938) TCGA-43-8115-01 8 20035988 20035988 G T SLC18A1 Missense_Mutation p.P169T 0.46 deleterious(0) probably_damaging(1) TCGA-43-8115-01 8 77618135 77618135 A T ZFHX4 Silent p.G604G 0.13 TCGA-43-8115-01 8 87151770 87151770 C A ATP6V0D2 Nonsense_Mutation p.C129* 0.16 TCGA-43-8115-01 9 119903685 119903685 G T ASTN2 Intron 0.41 TCGA-43-8115-01 9 5465520 5465520 C T CD274 Missense_Mutation p.P235L 0.30 tolerated(0.29) benign(0.003) TCGA-43-8115-01 9 78953262 78953262 G T PCSK5 Missense_Mutation p.R1595L 0.28 tolerated(0.07) benign(0.345) TCGA-43-8115-01 X 100912263 100912263 G A ARMCX2 Silent p.S104S 0.16 TCGA-43-8115-01 X 103268169 103268169 G T H2BFWT Missense_Mutation p.L22I 0.21 tolerated(0.18) benign(0.019) TCGA-43-8115-01 X 118239091 118239091 C G KIAA1210 Missense_Mutation p.R311P 0.19 tolerated(0.14) probably_damaging(0.996) TCGA-43-8115-01 X 127185855 127185855 G A ACTRT1 Missense_Mutation p.P111S 0.15 tolerated(0.12) probably_damaging(0.96) TCGA-43-8115-01 X 129290549 129290549 A T AIFM1 Silent p.P45P 0.13 TCGA-43-8115-01 X 135092701 135092701 T C SLC9A6 Missense_Mutation p.S334P 0.12 deleterious(0) probably_damaging(0.999) TCGA-43-8115-01 X 135453541 135453541 C G GPR112 Missense_Mutation p.A2484G 0.29 tolerated(0.05) benign(0.007) TCGA-43-8115-01 X 138698583 138698583 A G MCF2 Missense_Mutation p.I410T 0.14 deleterious(0.04) benign(0.002) TCGA-43-8115-01 X 1407672 1407672 C G CSF2RA Missense_Mutation p.Q122E 0.08 tolerated(0.19) benign(0.071) TCGA-43-8115-01 X 140996174 140996174 C - MAGEC1 Frame_Shift_Del p.Q996Rfs*5 0.11 TCGA-43-8115-01 X 148794842 148794842 G T MAGEA11 Missense_Mutation p.G8V 0.14 tolerated_low_confidence(0.19) benign(0) TCGA-43-8115-01 X 149613795 149613795 A C MAMLD1 Missense_Mutation p.K5Q 0.19 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-43-8115-01 X 151533033 151533033 T C GABRA3 Missense_Mutation p.T4A 0.21 tolerated_low_confidence(0.07) benign(0) TCGA-43-8115-01 X 152159455 152159455 C A PNMA5 Missense_Mutation p.A230S 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-43-8115-01 X 152482012 152482012 T C MAGEA1 3'UTR 0.14 TCGA-43-8115-01 X 152482516 152482516 G A MAGEA1 Silent p.T165T 0.20 TCGA-43-8115-01 X 152969453 152969453 C A BCAP31 Silent p.A213A 0.14 TCGA-43-8115-01 X 155254966 155254966 C G WASH6P RNA 0.12 TCGA-43-8115-01 X 155255104 155255104 C G WASH6P RNA 0.12 TCGA-43-8115-01 X 19389093 19389093 G T MAP3K15 Silent p.V1128V 0.16 TCGA-43-8115-01 X 30326398 30326398 G C NR0B1 Missense_Mutation p.I361M 0.15 tolerated(0.09) probably_damaging(0.998) TCGA-43-8115-01 X 30739108 30739108 G T GK Silent p.A493A 0.10 TCGA-43-8115-01 X 34148183 34148183 G T FAM47A Missense_Mutation p.A738D 0.12 deleterious(0) probably_damaging(0.991) TCGA-43-8115-01 X 41334004 41334004 C A NYX Missense_Mutation p.T433N 0.36 tolerated(0.08) benign(0.081) TCGA-43-8115-01 X 41586584 41586584 G T GPR82 Missense_Mutation p.S102I 0.15 deleterious(0) possibly_damaging(0.886) TCGA-43-8115-01 X 47842752 47842752 C A ZNF182 Silent p.L44L 0.15 TCGA-43-8115-01 X 48780386 48780386 G T OTUD5 3'UTR 0.15 TCGA-43-8115-01 X 48974066 48974066 C T GPKOW Missense_Mutation p.R222H 0.13 tolerated(0.29) benign(0.006) TCGA-43-8115-01 X 49853426 49853426 G C CLCN5 Missense_Mutation p.M543I 0.15 tolerated(0.13) benign(0.028) TCGA-43-8115-01 X 54278052 54278052 A T WNK3 Silent p.G812G 0.12 TCGA-43-8115-01 X 57146725 57146725 C A SPIN2B Missense_Mutation p.R113M 0.11 deleterious(0) benign(0.412) TCGA-43-8115-01 X 65408283 65408283 C T HEPH Silent p.N290N 0.50 TCGA-43-8115-01 X 65819541 65819541 C A EDA2R Missense_Mutation p.G248C 0.17 deleterious(0.02) possibly_damaging(0.896) TCGA-43-8115-01 X 70823895 70823895 C A ACRC Missense_Mutation p.D256E 0.14 unknown(0) TCGA-43-8115-01 X 76938673 76938673 G T ATRX Nonsense_Mutation p.S692* 0.20 TCGA-43-8115-01 X 79945521 79945521 T G BRWD3 Missense_Mutation p.S1225R 0.38 deleterious(0) probably_damaging(0.968) TCGA-43-8115-01 X 96212999 96212999 C A DIAPH2 Missense_Mutation p.P596Q 0.13 tolerated(0.29) unknown(0) TCGA-43-8116-01 10 108380257 108380257 C A SORCS1 Missense_Mutation p.A909S 0.45 deleterious(0) benign(0.199) TCGA-43-8116-01 10 124273768 124273768 A G HTRA1 Missense_Mutation p.N446D 0.26 tolerated(0.06) benign(0.107) TCGA-43-8116-01 10 134752133 134752134 TC - TTC40 Frame_Shift_Del p.Q165Hfs*2 0.16 TCGA-43-8116-01 10 135352459 135352459 C A CYP2E1 Silent p.P491P 0.14 TCGA-43-8116-01 10 17756741 17756741 C T STAM Nonsense_Mutation p.Q529* 0.04 TCGA-43-8116-01 10 18292239 18292239 C A SLC39A12 Silent p.I633I 0.31 TCGA-43-8116-01 10 26994282 26994282 G T PDSS1 Missense_Mutation p.G99C 0.19 tolerated(0.14) probably_damaging(0.941) TCGA-43-8116-01 10 48389955 48389955 G A RBP3 Missense_Mutation p.P308L 0.19 tolerated(0.19) probably_damaging(0.988) TCGA-43-8116-01 10 50863472 50863472 C - CHAT Frame_Shift_Del p.Q607Rfs*9 0.28 TCGA-43-8116-01 10 50947837 50947837 C A OGDHL Missense_Mutation p.W730L 0.27 deleterious(0) probably_damaging(0.973) TCGA-43-8116-01 10 52502738 52502738 C T ASAH2B Silent p.S18S 0.24 TCGA-43-8116-01 10 55913041 55913041 C A PCDH15 Missense_Mutation p.D535Y 0.15 deleterious(0) probably_damaging(1) TCGA-43-8116-01 10 63170350 63170350 G C TMEM26 Missense_Mutation p.F279L 0.17 deleterious(0.01) possibly_damaging(0.865) TCGA-43-8116-01 10 70252952 70252952 C A SLC25A16 Missense_Mutation p.G183C 0.15 deleterious(0) probably_damaging(1) TCGA-43-8116-01 10 70451100 70451100 G C TET1 Silent p.L1980L 0.19 TCGA-43-8116-01 10 98741982 98741982 C G C10orf12 Missense_Mutation p.Q279E 0.30 tolerated(0.32) benign(0.204) TCGA-43-8116-01 10 99640025 99640025 C G CRTAC1 Missense_Mutation p.E600D 0.45 tolerated_low_confidence(0.26) benign(0.005) TCGA-43-8116-01 11 109294802 109294802 C G C11orf87 Missense_Mutation p.S148W 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.741) TCGA-43-8116-01 11 112832208 112832208 T C NCAM1 Silent p.N17N 0.50 TCGA-43-8116-01 11 122850018 122850018 G C BSX Missense_Mutation p.T137R 0.28 deleterious(0.04) probably_damaging(0.96) TCGA-43-8116-01 11 122944315 122944315 G T CLMP Missense_Mutation p.T330N 0.49 tolerated(0.14) benign(0.002) TCGA-43-8116-01 11 123811246 123811246 C A OR4D5 Missense_Mutation p.P308H 0.14 tolerated(0.28) benign(0.174) TCGA-43-8116-01 11 123887144 123887144 C T OR10G4 Missense_Mutation p.T288I 0.24 deleterious(0.01) benign(0.167) TCGA-43-8116-01 11 123894194 123894194 A T OR10G9 Missense_Mutation p.T159S 0.14 deleterious(0.03) possibly_damaging(0.898) TCGA-43-8116-01 11 125301336 125301336 C A PKNOX2 3'UTR 0.20 TCGA-43-8116-01 11 126294687 126294687 G A KIRREL3 Missense_Mutation p.R709W 0.50 deleterious(0) probably_damaging(0.995) TCGA-43-8116-01 11 128844152 128844152 G T ARHGAP32 Silent p.A966A 0.32 TCGA-43-8116-01 11 14282184 14282184 G A RP11-21L19.1 3'Flank 0.14 TCGA-43-8116-01 11 1469081 1469081 G T BRSK2 Intron 0.54 TCGA-43-8116-01 11 55579063 55579063 G A OR5L1 Missense_Mutation p.A41T 0.51 deleterious(0.02) benign(0.022) TCGA-43-8116-01 11 55761756 55761756 C A OR5F1 Missense_Mutation p.G116W 0.23 deleterious(0) probably_damaging(0.996) TCGA-43-8116-01 11 55927378 55927378 C A OR8K5 Missense_Mutation p.R139L 0.21 deleterious_low_confidence(0) possibly_damaging(0.743) TCGA-43-8116-01 11 56310506 56310506 A G OR5M11 Silent p.N76N 0.20 TCGA-43-8116-01 11 57004429 57004429 G C APLNR Missense_Mutation p.S17C 0.50 deleterious(0.01) benign(0.353) TCGA-43-8116-01 11 57440586 57440586 A T ZDHHC5 Missense_Mutation p.R8S 0.44 tolerated(0.07) benign(0.009) TCGA-43-8116-01 11 58480315 58480315 G T GLYAT Silent p.I78I 0.49 TCGA-43-8116-01 11 5877980 5877980 T C OR52E8 Silent p.%3D 0.25 TCGA-43-8116-01 11 6023785 6023785 C A OR56A4 Missense_Mutation p.R198S 0.24 deleterious(0.01) benign(0.013) TCGA-43-8116-01 11 62288761 62288761 T C AHNAK Silent p.P4376P 0.22 TCGA-43-8116-01 11 62288778 62288778 G C AHNAK Missense_Mutation p.P4371A 0.22 probably_damaging(0.999) TCGA-43-8116-01 11 62782196 62782196 G C SLC22A8 Missense_Mutation p.P79A 0.06 tolerated(0.09) benign(0.058) TCGA-43-8116-01 11 64641900 64641900 G A EHD1 Silent p.I165I 0.14 TCGA-43-8116-01 11 66062486 66062486 G A TMEM151A Missense_Mutation p.E257K 0.21 deleterious(0.01) probably_damaging(0.994) TCGA-43-8116-01 11 67354004 67354004 C G GSTP1 Missense_Mutation p.P197A 0.34 tolerated(0.11) benign(0.002) TCGA-43-8116-01 11 69482676 69482676 C A ORAOV1 Missense_Mutation p.G111V 0.05 deleterious(0) possibly_damaging(0.594) TCGA-43-8116-01 11 85396000 85396000 C T CCDC89 3'UTR 0.50 TCGA-43-8116-01 11 85435898 85435898 T A SYTL2 Missense_Mutation p.L534F 0.37 deleterious(0.02) probably_damaging(0.956) TCGA-43-8116-01 11 86056630 86056630 G A C11orf73 Missense_Mutation p.E182K 0.25 tolerated(0.17) possibly_damaging(0.622) TCGA-43-8116-01 11 92534795 92534795 G C FAT3 Silent p.T2872T 0.44 TCGA-43-8116-01 12 104171780 104171780 G A NT5DC3 Missense_Mutation p.R492C 0.41 deleterious(0.01) possibly_damaging(0.791) TCGA-43-8116-01 12 106838327 106838327 C T POLR3B Missense_Mutation p.P681L 0.24 deleterious(0) probably_damaging(0.999) TCGA-43-8116-01 12 109181758 109181758 G A SSH1 3'UTR 0.13 TCGA-43-8116-01 12 10958673 10958673 T G TAS2R8 Silent p.R303R 0.15 TCGA-43-8116-01 12 122821264 122821264 C G CLIP1 Missense_Mutation p.R828T 0.17 deleterious(0.03) benign(0.031) TCGA-43-8116-01 12 123068983 123068983 C G KNTC1 Missense_Mutation p.T1141S 0.10 deleterious(0.03) probably_damaging(0.956) TCGA-43-8116-01 12 129822265 129822265 A T TMEM132D Missense_Mutation p.Y405N 0.18 deleterious(0) possibly_damaging(0.892) TCGA-43-8116-01 12 15654647 15654647 T C PTPRO Missense_Mutation p.F252S 0.65 tolerated_low_confidence(0.26) benign(0.047) TCGA-43-8116-01 12 30829440 30829440 C G IPO8 Missense_Mutation p.V241L 0.11 deleterious(0.04) benign(0.273) TCGA-43-8116-01 12 402155 402155 T C KDM5A Missense_Mutation p.K1546E 0.17 tolerated(0.35) possibly_damaging(0.899) TCGA-43-8116-01 12 41900338 41900338 G T PDZRN4 Silent p.V308V 0.14 TCGA-43-8116-01 12 43833752 43833752 G T ADAMTS20 Missense_Mutation p.A804E 0.45 tolerated(0.41) benign(0.003) TCGA-43-8116-01 12 51138490 51138490 C T DIP2B Silent p.I1533I 0.18 TCGA-43-8116-01 12 52981534 52981534 G T KRT72 Missense_Mutation p.H397Q 0.16 tolerated(1) benign(0.006) TCGA-43-8116-01 12 53185131 53185131 T C KRT3 Missense_Mutation p.Q465R 0.22 tolerated(0.4) benign(0.225) TCGA-43-8116-01 12 54911350 54911350 C T NCKAP1L Missense_Mutation p.R377C 0.29 deleterious(0) probably_damaging(1) TCGA-43-8116-01 12 64879736 64879736 A C TBK1 Silent p.R427R 0.04 TCGA-43-8116-01 12 6753375 6753375 G A ACRBP Missense_Mutation p.S291L 0.04 deleterious(0.05) benign(0.005) TCGA-43-8116-01 12 7045812 7045812 C T ATN1 Missense_Mutation p.P461L 0.60 probably_damaging(0.995) TCGA-43-8116-01 12 7170299 7170299 C G C1S Missense_Mutation p.Q107E 0.06 tolerated(0.71) benign(0.446) TCGA-43-8116-01 12 7527509 7527509 G T CD163L1 Silent p.T1004T 0.45 TCGA-43-8116-01 12 81111244 81111244 G T MYF5 Silent p.L134L 0.08 TCGA-43-8116-01 12 82750914 82750914 A G CCDC59 Missense_Mutation p.Y97H 0.11 deleterious(0) probably_damaging(0.999) TCGA-43-8116-01 13 114078632 114078632 C A ADPRHL1 Silent p.G269G 0.45 TCGA-43-8116-01 13 25480944 25480944 G A CENPJ Missense_Mutation p.P411L 0.51 tolerated(0.66) benign(0.004) TCGA-43-8116-01 13 28851476 28851476 A G PAN3 Missense_Mutation p.T718A 0.27 tolerated(0.32) benign(0.016) TCGA-43-8116-01 13 28883020 28883020 G T FLT1 Missense_Mutation p.T1227N 0.34 deleterious(0) probably_damaging(0.968) TCGA-43-8116-01 13 29933509 29933509 G A MTUS2 Missense_Mutation p.E1016K 0.27 deleterious(0.02) benign(0.322) TCGA-43-8116-01 14 105419121 105419121 G A AHNAK2 Silent p.D889D 0.12 TCGA-43-8116-01 14 105419122 105419122 T A AHNAK2 Missense_Mutation p.D889V 0.13 possibly_damaging(0.732) TCGA-43-8116-01 14 105419123 105419123 C G AHNAK2 Missense_Mutation p.D889H 0.13 benign(0.322) TCGA-43-8116-01 14 105419239 105419239 T C AHNAK2 Missense_Mutation p.K850R 0.03 possibly_damaging(0.83) TCGA-43-8116-01 14 19553768 19553768 G T POTEG Missense_Mutation p.G118C 0.12 deleterious(0) probably_damaging(0.954) TCGA-43-8116-01 14 20528494 20528494 C T OR4L1 Silent p.C97C 0.28 TCGA-43-8116-01 14 45711626 45711626 G A MIS18BP1 Missense_Mutation p.H252Y 0.20 deleterious(0.02) possibly_damaging(0.852) TCGA-43-8116-01 14 52535698 52535698 C A NID2 Silent p.R5R 0.27 TCGA-43-8116-01 14 58814555 58814555 A C ARID4A Missense_Mutation p.S455R 0.41 tolerated(0.05) possibly_damaging(0.638) TCGA-43-8116-01 14 93178235 93178235 A G LGMN Missense_Mutation p.S226P 0.32 tolerated(0.25) benign(0.334) TCGA-43-8116-01 15 101114043 101114043 C A LINS Silent p.V345V 0.05 TCGA-43-8116-01 15 22382797 22382797 G A OR4N4 Missense_Mutation p.G109R 0.16 deleterious(0) possibly_damaging(0.714) TCGA-43-8116-01 15 22473074 22473074 T C IGHV4OR15-8 Missense_Mutation p.E66G 0.10 deleterious(0.03) probably_damaging(0.987) TCGA-43-8116-01 15 22473077 22473077 A G IGHV4OR15-8 Missense_Mutation p.L65P 0.09 deleterious(0.01) probably_damaging(0.991) TCGA-43-8116-01 15 23006289 23006289 T C NIPA2 Missense_Mutation p.T339A 0.31 tolerated(0.45) benign(0) TCGA-43-8116-01 15 35044815 35044815 C A GJD2 Missense_Mutation p.W277L 0.41 tolerated(0.33) probably_damaging(0.999) TCGA-43-8116-01 15 40295447 40295447 G T EIF2AK4 Nonsense_Mutation p.E1097* 0.22 TCGA-43-8116-01 15 41801229 41801229 C G LTK Missense_Mutation p.V366L 0.36 deleterious_low_confidence(0) possibly_damaging(0.672) TCGA-43-8116-01 15 51032016 51032016 C T SPPL2A Silent p.L198L 0.35 TCGA-43-8116-01 15 55916579 55916579 T C PRTG Silent p.L1018L 0.08 TCGA-43-8116-01 15 58834806 58834806 C - LIPC Frame_Shift_Del p.G178Afs*53 0.33 TCGA-43-8116-01 15 70982849 70982849 T C UACA Missense_Mutation p.Y123C 0.54 deleterious(0) probably_damaging(0.998) TCGA-43-8116-01 15 71125387 71125387 C G LARP6 Missense_Mutation p.L160F 0.22 deleterious(0.01) benign(0.41) TCGA-43-8116-01 15 73889484 73889484 G C NPTN Silent p.L106L 0.32 TCGA-43-8116-01 15 74623559 74623559 G T CCDC33 Nonsense_Mutation p.E565* 0.06 TCGA-43-8116-01 15 74918241 74918241 A G CLK3 Missense_Mutation p.N398S 0.11 deleterious(0) probably_damaging(1) TCGA-43-8116-01 15 76189358 76189358 C T UBE2Q2 Missense_Mutation p.A351V 0.24 deleterious(0) probably_damaging(0.973) TCGA-43-8116-01 15 80478580 80478580 G T FAH 3'UTR 0.41 TCGA-43-8116-01 16 15092221 15092221 G C PDXDC1 Missense_Mutation p.K40N 0.22 tolerated(0.09) benign(0.005) TCGA-43-8116-01 16 19516202 19516202 C - GDE1 Splice_Site p.X283_splice 0.23 TCGA-43-8116-01 16 2260184 2260184 G T BRICD5 Silent p.I93I 0.41 TCGA-43-8116-01 16 31050956 31050956 A G STX4 Missense_Mutation p.Q266R 0.33 deleterious(0.03) possibly_damaging(0.83) TCGA-43-8116-01 16 4245753 4245753 G T SRL Silent p.L137L 0.12 TCGA-43-8116-01 16 46943636 46943636 G T GPT2 Missense_Mutation p.R206L 0.34 deleterious(0.03) possibly_damaging(0.847) TCGA-43-8116-01 16 49412431 49412431 T C C16orf78 Silent p.Y107Y 0.30 TCGA-43-8116-01 16 57295904 57295904 C A PLLP Missense_Mutation p.V72F 0.33 deleterious(0) probably_damaging(0.993) TCGA-43-8116-01 16 731262 731262 C T STUB1 Silent p.D90D 0.13 TCGA-43-8116-01 16 87960487 87960487 G T CA5A Silent p.I69I 0.40 TCGA-43-8116-01 17 10435170 10435170 G T MYH2 Missense_Mutation p.S826Y 0.37 deleterious(0) possibly_damaging(0.61) TCGA-43-8116-01 17 1579336 1579336 C T PRPF8 Silent p.R855R 0.17 TCGA-43-8116-01 17 19584932 19584932 C T SLC47A2 Missense_Mutation p.A442T 0.48 deleterious(0) possibly_damaging(0.453) TCGA-43-8116-01 17 19699448 19699448 T A ULK2 Missense_Mutation p.R653W 0.41 tolerated(0.18) probably_damaging(0.92) TCGA-43-8116-01 17 25976065 25976065 A C LGALS9 3'UTR 0.21 TCGA-43-8116-01 17 3195624 3195624 A G OR3A1 Silent p.L85L 0.38 TCGA-43-8116-01 17 33497248 33497248 C T UNC45B Silent p.L555L 0.33 TCGA-43-8116-01 17 33905052 33905052 T C PEX12 5'UTR 0.31 TCGA-43-8116-01 17 36707534 36707534 T A SRCIN1 Missense_Mutation p.E940V 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-43-8116-01 17 40720940 40720940 G A MLX Silent p.Q139Q 0.37 TCGA-43-8116-01 17 44248808 44248808 G C KANSL1 Silent p.V234V 0.05 TCGA-43-8116-01 17 55957075 55957075 C G CUEDC1 Missense_Mutation p.D121H 0.07 deleterious(0) probably_damaging(0.995) TCGA-43-8116-01 17 56344816 56344816 C G LPO Silent p.L600L 0.47 TCGA-43-8116-01 17 71420130 71420130 C A SDK2 Missense_Mutation p.G562V 0.44 deleterious(0) probably_damaging(0.973) TCGA-43-8116-01 17 7577556 7577556 C A TP53 Missense_Mutation p.C242F 0.38 deleterious(0) probably_damaging(1) TCGA-43-8116-01 17 7708307 7708307 T G DNAH2 Missense_Mutation p.V3072G 0.29 benign(0.201) TCGA-43-8116-01 17 77708953 77708953 G A ENPP7 Missense_Mutation p.E171K 0.52 deleterious(0.04) possibly_damaging(0.796) TCGA-43-8116-01 18 13760052 13760052 G A RNMT 3'UTR 0.30 TCGA-43-8116-01 18 13885372 13885372 A T MC2R Missense_Mutation p.V49E 0.23 deleterious(0) probably_damaging(0.999) TCGA-43-8116-01 18 21946860 21946860 C T OSBPL1A Missense_Mutation p.R93Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-43-8116-01 18 22056762 22056762 G T HRH4 Missense_Mutation p.V137L 0.31 tolerated(0.18) benign(0.044) TCGA-43-8116-01 18 24039773 24039773 G A KCTD1 Silent p.C142C 0.28 TCGA-43-8116-01 18 2928653 2928653 T C LPIN2 Missense_Mutation p.Y519C 0.33 deleterious(0) probably_damaging(0.999) TCGA-43-8116-01 18 32374158 32374158 C A DTNA Silent p.I102I 0.22 TCGA-43-8116-01 18 32953481 32953481 G C ZNF396 Silent p.L167L 0.18 TCGA-43-8116-01 18 33558824 33558824 C T C18orf21 Missense_Mutation p.S173F 0.15 deleterious(0) possibly_damaging(0.807) TCGA-43-8116-01 18 47800596 47800596 C G MBD1 Missense_Mutation p.R369P 0.29 deleterious(0) probably_damaging(0.995) TCGA-43-8116-01 18 5969394 5969394 C T L3MBTL4 Missense_Mutation p.E547K 0.11 deleterious(0) possibly_damaging(0.61) TCGA-43-8116-01 19 12721871 12721871 C T ZNF791 5'UTR 0.17 TCGA-43-8116-01 19 12807216 12807216 C G FBXW9 Silent p.P60P 0.17 TCGA-43-8116-01 19 13923950 13923950 C T ZSWIM4 Silent p.S384S 0.29 TCGA-43-8116-01 19 16772103 16772103 C A TMEM38A Missense_Mutation p.F25L 0.31 deleterious(0) probably_damaging(0.978) TCGA-43-8116-01 19 1802586 1802586 T A ATP8B3 Missense_Mutation p.E321D 0.19 tolerated(0.29) benign(0.03) TCGA-43-8116-01 19 2280931 2280931 G C C19orf35 5'UTR 0.16 TCGA-43-8116-01 19 2405538 2405538 C A TMPRSS9 Missense_Mutation p.F245L 0.24 deleterious(0.01) probably_damaging(0.976) TCGA-43-8116-01 19 30935025 30935025 G T ZNF536 Missense_Mutation p.G186C 0.36 deleterious(0.02) probably_damaging(1) TCGA-43-8116-01 19 36508566 36508566 C A CLIP3 Missense_Mutation p.R481L 0.18 deleterious(0) probably_damaging(0.999) TCGA-43-8116-01 19 3813826 3813826 G A ZFR2 Missense_Mutation p.T745I 0.18 tolerated(0.19) benign(0.091) TCGA-43-8116-01 19 38964175 38964175 G T RYR1 Silent p.P1308P 0.50 TCGA-43-8116-01 19 40581882 40581882 G C ZNF780A Missense_Mutation p.S157C 0.16 deleterious(0.04) probably_damaging(0.931) TCGA-43-8116-01 19 41235261 41235261 G T ITPKC Missense_Mutation p.M470I 0.18 tolerated(0.06) probably_damaging(0.998) TCGA-43-8116-01 19 45262720 45262720 C A BCL3 Missense_Mutation p.Q405K 0.20 tolerated(0.59) unknown(0) TCGA-43-8116-01 19 46417652 46417652 C A NANOS2 Silent p.V100V 0.39 TCGA-43-8116-01 19 51447006 51447006 G A KLK5 Silent p.L255L 0.20 TCGA-43-8116-01 19 53855428 53855428 T C ZNF845 Silent p.C500C 0.26 TCGA-43-8116-01 19 54224353 54224353 G C MIR517B RNA 0.22 TCGA-43-8116-01 19 54756741 54756741 C G LILRB5 Missense_Mutation p.R489S 0.30 tolerated(0.06) benign(0.012) TCGA-43-8116-01 19 54823151 54823151 A G LILRA5 Missense_Mutation p.L131P 0.21 deleterious(0) probably_damaging(1) TCGA-43-8116-01 19 55175878 55175878 C T LILRB4 Silent p.H199H 0.29 TCGA-43-8116-01 19 55451377 55451377 G T NLRP7 Nonsense_Mutation p.C270* 0.21 TCGA-43-8116-01 19 56539652 56539652 C G NLRP5 Missense_Mutation p.L685V 0.23 deleterious(0) possibly_damaging(0.753) TCGA-43-8116-01 19 56552310 56552310 G T NLRP5 Missense_Mutation p.A937S 0.20 tolerated(0.15) possibly_damaging(0.796) TCGA-43-8116-01 19 56688494 56688494 T C GALP Missense_Mutation p.V6A 0.06 tolerated_low_confidence(0.49) unknown(0) TCGA-43-8116-01 19 57646783 57646783 G T ZIM3 Missense_Mutation p.Q308K 0.20 tolerated(0.29) benign(0.026) TCGA-43-8116-01 19 58234651 58234651 G C ZNF671 Missense_Mutation p.L66V 0.24 deleterious(0) probably_damaging(0.959) TCGA-43-8116-01 19 59060788 59060788 C G TRIM28 Missense_Mutation p.P585A 0.33 tolerated(0.33) benign(0.003) TCGA-43-8116-01 19 8661988 8661988 C G ADAMTS10 Missense_Mutation p.G308A 0.26 deleterious(0.02) probably_damaging(0.997) TCGA-43-8116-01 19 9000567 9000567 C G MUC16 Splice_Site p.X13473_splice 0.29 TCGA-43-8116-01 19 9049302 9049302 T A MUC16 Missense_Mutation p.S10777C 0.21 benign(0.063) TCGA-43-8116-01 19 9063777 9063777 C A MUC16 Missense_Mutation p.W7890L 0.35 unknown(0) TCGA-43-8116-01 19 9073130 9073130 A T MUC16 Silent p.P4772P 0.29 TCGA-43-8116-01 19 9226384 9226384 T A OR7G1 Missense_Mutation p.E19V 0.04 deleterious(0) possibly_damaging(0.649) TCGA-43-8116-01 19 9324722 9324722 C A OR7D4 Silent p.V264V 0.17 TCGA-43-8116-01 1 10363358 10363358 T G KIF1B Intron 0.22 TCGA-43-8116-01 1 10493945 10493945 A G APITD1 Missense_Mutation p.E33G 0.29 deleterious(0) possibly_damaging(0.879) TCGA-43-8116-01 1 11188983 11188983 C G MTOR Missense_Mutation p.G1914R 0.11 deleterious(0) probably_damaging(0.999) TCGA-43-8116-01 1 118165864 118165864 A G FAM46C Missense_Mutation p.N125S 0.15 tolerated(0.77) benign(0.005) TCGA-43-8116-01 1 118530499 118530499 G C SPAG17 Missense_Mutation p.T1876R 0.20 tolerated(0.27) benign(0.017) TCGA-43-8116-01 1 120464895 120464895 C T NOTCH2 Missense_Mutation p.R1726H 0.17 deleterious(0) probably_damaging(0.998) TCGA-43-8116-01 1 12908029 12908029 G T HNRNPCL1 Silent p.S38S 0.06 TCGA-43-8116-01 1 1431123 1431123 C T ATAD3B Missense_Mutation p.P625S 0.26 tolerated_low_confidence(0.33) benign(0) TCGA-43-8116-01 1 143912181 143912181 C T FAM72D Missense_Mutation p.E39K 0.07 tolerated(0.64) benign(0.004) TCGA-43-8116-01 1 144879041 144879041 C T PDE4DIP Nonsense_Mutation p.W1470* 0.07 TCGA-43-8116-01 1 147230694 147230694 G A GJA5 Missense_Mutation p.S218F 0.24 deleterious(0) probably_damaging(1) TCGA-43-8116-01 1 153066168 153066168 C T SPRR2E Silent p.T20T 0.21 TCGA-43-8116-01 1 153791379 153791379 C A GATAD2B Missense_Mutation p.R162L 0.24 deleterious(0) probably_damaging(0.999) TCGA-43-8116-01 1 153994716 153994716 G A NUP210L Missense_Mutation p.P1468S 0.25 tolerated(0.19) probably_damaging(1) TCGA-43-8116-01 1 154241388 154241388 G A UBAP2L Silent p.P1042P 0.19 TCGA-43-8116-01 1 155034421 155034421 G A ADAM15 Silent p.L798L 0.23 TCGA-43-8116-01 1 155255678 155255678 T G HCN3 Missense_Mutation p.F467C 0.31 deleterious(0) probably_damaging(1) TCGA-43-8116-01 1 159921426 159921426 C G SLAMF9 3'UTR 0.21 TCGA-43-8116-01 1 159923133 159923133 G T SLAMF9 Silent p.I119I 0.34 TCGA-43-8116-01 1 161047377 161047377 G C PVRL4 Missense_Mutation p.S199C 0.08 deleterious(0.05) possibly_damaging(0.823) TCGA-43-8116-01 1 161165910 161165910 C A ADAMTS4 Intron 0.24 TCGA-43-8116-01 1 169204428 169204428 C A NME7 Missense_Mutation p.D277Y 0.20 deleterious(0) probably_damaging(0.951) TCGA-43-8116-01 1 174668765 174668765 T C RABGAP1L Missense_Mutation p.Y668H 0.24 deleterious(0.04) possibly_damaging(0.871) TCGA-43-8116-01 1 175046884 175046884 C A TNN Silent p.A110A 0.26 TCGA-43-8116-01 1 17550888 17550888 C T PADI1 Missense_Mutation p.R125C 0.24 tolerated(0.09) probably_damaging(0.984) TCGA-43-8116-01 1 17603140 17603140 C T PADI3 Silent p.V478V 0.08 TCGA-43-8116-01 1 179414213 179414213 G C AXDND1 Missense_Mutation p.G558R 0.16 tolerated(0.06) benign(0.116) TCGA-43-8116-01 1 179783136 179783136 T A FAM163A Missense_Mutation p.Y106N 0.30 deleterious(0) probably_damaging(0.989) TCGA-43-8116-01 1 182635149 182635149 C A RGS8 Missense_Mutation p.A68S 0.34 deleterious(0.02) benign(0.357) TCGA-43-8116-01 1 198828010 198828010 C A MIR181B1 RNA 0.25 TCGA-43-8116-01 1 204957803 204957803 C T NFASC Missense_Mutation p.S879F 0.20 deleterious(0.02) probably_damaging(0.974) TCGA-43-8116-01 1 228431123 228431123 A C OBSCN Silent p.R1149R 0.27 TCGA-43-8116-01 1 228447429 228447429 A C OBSCN Missense_Mutation p.S1697R 0.16 benign(0.157) TCGA-43-8116-01 1 231401812 231401812 C G GNPAT Silent p.T275T 0.17 TCGA-43-8116-01 1 237890401 237890401 G T RYR2 Missense_Mutation p.Q3580H 0.33 benign(0.044) TCGA-43-8116-01 1 247582307 247582307 G T NLRP3 Missense_Mutation p.A71S 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-43-8116-01 1 247582338 247582338 G C NLRP3 Missense_Mutation p.R81T 0.07 deleterious(0) probably_damaging(0.998) TCGA-43-8116-01 1 247607346 247607346 C T NLRP3 Silent p.L914L 0.22 TCGA-43-8116-01 1 247737710 247737710 C A GCSAML 3'UTR 0.28 TCGA-43-8116-01 1 247752196 247752196 C A OR2G2 Missense_Mutation p.H179N 0.28 tolerated(0.12) probably_damaging(1) TCGA-43-8116-01 1 26104728 26104728 G A MAN1C1 Missense_Mutation p.E464K 0.42 tolerated(0.38) benign(0.04) TCGA-43-8116-01 1 26516103 26516103 G A CNKSR1 3'UTR 0.42 TCGA-43-8116-01 1 34080131 34080131 A G CSMD2 Missense_Mutation p.W1996R 0.53 deleterious(0) probably_damaging(0.969) TCGA-43-8116-01 1 34102040 34102040 A C CSMD2 Missense_Mutation p.V1590G 0.29 deleterious(0) possibly_damaging(0.471) TCGA-43-8116-01 1 3544190 3544190 A C TPRG1L Silent p.A199A 0.27 TCGA-43-8116-01 1 40961594 40961594 T G ZFP69 Missense_Mutation p.F482V 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-43-8116-01 1 44820561 44820561 C T ERI3 Intron 0.24 TCGA-43-8116-01 1 55119007 55119007 C T MROH7 Silent p.A136A 0.23 TCGA-43-8116-01 1 65301154 65301154 C G JAK1 Missense_Mutation p.Q1098H 0.32 deleterious(0.02) probably_damaging(0.998) TCGA-43-8116-01 1 78046742 78046742 G A ZZZ3 Missense_Mutation p.R641C 0.07 deleterious(0) probably_damaging(0.999) TCGA-43-8116-01 1 79403503 79403503 G T ELTD1 Nonsense_Mutation p.S250* 0.22 TCGA-43-8116-01 1 8928069 8928069 C G ENO1 Missense_Mutation p.E96D 0.07 tolerated_low_confidence(0.24) benign(0.001) TCGA-43-8116-01 20 30585031 30585031 G A XKR7 Missense_Mutation p.R504Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-43-8116-01 20 34145298 34145300 CTC - ERGIC3 3'UTR 0.43 TCGA-43-8116-01 20 35422979 35422979 G A SOGA1 Missense_Mutation p.S1169F 0.13 deleterious(0) probably_damaging(0.983) TCGA-43-8116-01 20 3672835 3672835 C A SIGLEC1 Missense_Mutation p.A1349S 0.20 tolerated(0.07) possibly_damaging(0.699) TCGA-43-8116-01 20 3725711 3725711 C G HSPA12B Missense_Mutation p.F143L 0.22 deleterious(0) probably_damaging(0.994) TCGA-43-8116-01 20 422235 422235 T C TBC1D20 Missense_Mutation p.Q208R 0.22 tolerated(0.42) benign(0.014) TCGA-43-8116-01 20 43132453 43132453 T A SERINC3 Intron 0.22 TCGA-43-8116-01 20 43835671 43835671 C A SEMG1 5'UTR 0.26 TCGA-43-8116-01 20 56137252 56137252 T G PCK1 Missense_Mutation p.M117R 0.17 tolerated(0.14) benign(0.233) TCGA-43-8116-01 21 16338216 16338216 A G NRIP1 Silent p.P766P 0.29 TCGA-43-8116-01 21 37759993 37759993 C G CHAF1B Missense_Mutation p.S75C 0.07 deleterious(0.02) benign(0.349) TCGA-43-8116-01 22 22842070 22842070 T A ZNF280B 3'UTR 0.33 TCGA-43-8116-01 22 31011382 31011382 A T TCN2 Silent p.T225T 0.49 TCGA-43-8116-01 22 32462970 32462970 G T SLC5A1 Missense_Mutation p.G86W 0.53 deleterious(0) probably_damaging(1) TCGA-43-8116-01 22 32754303 32754303 C A RFPL3 Missense_Mutation p.S82Y 0.40 tolerated(0.25) possibly_damaging(0.852) TCGA-43-8116-01 22 50684401 50684401 C T HDAC10 Missense_Mutation p.A591T 0.20 deleterious(0.01) probably_damaging(0.99) TCGA-43-8116-01 2 141528477 141528477 G A LRP1B Missense_Mutation p.L1867F 0.32 possibly_damaging(0.587) TCGA-43-8116-01 2 141771132 141771132 C - LRP1B Frame_Shift_Del p.K791Nfs*10 0.19 TCGA-43-8116-01 2 142004869 142004869 T A LRP1B Missense_Mutation p.H173L 0.31 benign(0) TCGA-43-8116-01 2 15746340 15746340 G T DDX1 Missense_Mutation p.A257S 0.20 tolerated(0.21) benign(0.171) TCGA-43-8116-01 2 170366655 170366655 G A KLHL41 Missense_Mutation p.V123I 0.15 deleterious(0) probably_damaging(0.987) TCGA-43-8116-01 2 172411238 172411238 C T CYBRD1 Silent p.G254G 0.29 TCGA-43-8116-01 2 179490042 179490042 T A TTN Missense_Mutation p.T14836S 0.10 TCGA-43-8116-01 2 179596277 179596277 G C TTN Missense_Mutation p.T5739S 0.64 TCGA-43-8116-01 2 201718629 201718629 C G CLK1 Silent p.L478L 0.05 TCGA-43-8116-01 2 201814337 201814337 C T ORC2 Missense_Mutation p.G90S 0.50 tolerated(0.06) benign(0.011) TCGA-43-8116-01 2 211473198 211473198 T C CPS1 Missense_Mutation p.M775T 0.24 deleterious(0) benign(0.047) TCGA-43-8116-01 2 211504777 211504777 C G CPS1 Missense_Mutation p.H991D 0.10 deleterious(0) probably_damaging(0.973) TCGA-43-8116-01 2 233128106 233128106 T C DIS3L2 Silent p.L539L 0.18 TCGA-43-8116-01 2 233990529 233990529 G T INPP5D Nonsense_Mutation p.E142* 0.23 TCGA-43-8116-01 2 234851354 234851354 T A TRPM8 Missense_Mutation p.S221T 0.51 deleterious(0.01) possibly_damaging(0.877) TCGA-43-8116-01 2 27360549 27360549 C A C2orf53 Missense_Mutation p.V217F 0.35 deleterious(0.02) possibly_damaging(0.803) TCGA-43-8116-01 2 31147103 31147103 T A GALNT14 Missense_Mutation p.K426M 0.17 tolerated(0.22) possibly_damaging(0.873) TCGA-43-8116-01 2 33487892 33487892 G T LTBP1 Intron 0.28 TCGA-43-8116-01 2 44556233 44556233 T C PREPL Missense_Mutation p.M458V 0.33 tolerated(0.88) benign(0.002) TCGA-43-8116-01 2 49190484 49190485 - A FSHR Frame_Shift_Ins p.M492Ifs*32 0.37 TCGA-43-8116-01 2 62115679 62115679 A T CCT4 5'UTR 0.21 TCGA-43-8116-01 2 66775093 66775093 G A MEIS1 Missense_Mutation p.E303K 0.16 deleterious(0.01) possibly_damaging(0.547) TCGA-43-8116-01 2 73718437 73718437 A G ALMS1 Silent p.L3116L 0.12 TCGA-43-8116-01 2 74783089 74783089 G T DOK1 Missense_Mutation p.V175L 0.32 tolerated(0.35) benign(0.014) TCGA-43-8116-01 2 79384297 79384297 C G REG3A 3'UTR 0.25 TCGA-43-8116-01 2 95943189 95943189 G T PROM2 Nonsense_Mutation p.E284* 0.47 TCGA-43-8116-01 2 98275083 98275083 C G ACTR1B Missense_Mutation p.G155A 0.09 deleterious(0) probably_damaging(1) TCGA-43-8116-01 3 108639339 108639339 A T GUCA1C Missense_Mutation p.Y100N 0.20 deleterious(0) possibly_damaging(0.876) TCGA-43-8116-01 3 113172588 113172588 T C SPICE1 Missense_Mutation p.N623D 0.29 tolerated(0.11) benign(0.014) TCGA-43-8116-01 3 119211131 119211131 G A POGLUT1 Missense_Mutation p.G342E 0.19 deleterious(0) probably_damaging(1) TCGA-43-8116-01 3 122215290 122215290 T A KPNA1 Missense_Mutation p.E41D 0.40 tolerated(0.39) benign(0.052) TCGA-43-8116-01 3 126190868 126190868 C T ZXDC Missense_Mutation p.D363N 0.33 deleterious(0.01) probably_damaging(1) TCGA-43-8116-01 3 128200025 128200025 G T GATA2 Missense_Mutation p.P427H 0.30 deleterious(0) probably_damaging(0.996) TCGA-43-8116-01 3 132213933 132213933 C A DNAJC13 Missense_Mutation p.H1315N 0.36 tolerated(0.17) benign(0.012) TCGA-43-8116-01 3 135741955 135741955 G - PPP2R3A Intron 0.32 TCGA-43-8116-01 3 140866060 140866060 C A SPSB4 Silent p.I257I 0.09 TCGA-43-8116-01 3 148577729 148577729 C A CPB1 Nonsense_Mutation p.C398* 0.16 TCGA-43-8116-01 3 157815879 157815879 C G SHOX2 Missense_Mutation p.K335N 0.05 deleterious(0) unknown(0) TCGA-43-8116-01 3 158539861 158539861 G C MFSD1 Missense_Mutation p.A386P 0.53 deleterious(0) probably_damaging(0.974) TCGA-43-8116-01 3 164760891 164760891 C G SI Missense_Mutation p.A654P 0.35 deleterious(0) probably_damaging(1) TCGA-43-8116-01 3 164792425 164792425 G C SI Missense_Mutation p.T50S 0.37 tolerated(0.82) benign(0) TCGA-43-8116-01 3 164906468 164906468 G A SLITRK3 Silent p.G717G 0.13 TCGA-43-8116-01 3 169099100 169099100 C G MECOM Missense_Mutation p.E108Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-43-8116-01 3 182897441 182897441 A G MCF2L2 Missense_Mutation p.C1049R 0.16 tolerated(0.73) benign(0.067) TCGA-43-8116-01 3 183273212 183273212 C A KLHL6 Missense_Mutation p.C77F 0.13 tolerated(0.71) possibly_damaging(0.833) TCGA-43-8116-01 3 185237068 185237068 T A LIPH Missense_Mutation p.R250W 0.50 deleterious(0) probably_damaging(0.998) TCGA-43-8116-01 3 186293675 186293675 A T DNAJB11 Missense_Mutation p.E91V 0.57 deleterious(0) probably_damaging(0.998) TCGA-43-8116-01 3 195451956 195451956 C T MUC20 Missense_Mutation p.T161I 0.12 deleterious(0.05) probably_damaging(0.938) TCGA-43-8116-01 3 195515705 195515705 T C MUC4 Missense_Mutation p.S916G 0.22 unknown(0) TCGA-43-8116-01 3 195515706 195515706 G T MUC4 Silent p.T915T 0.22 TCGA-43-8116-01 3 196771487 196771487 T A DLG1 3'UTR 0.56 TCGA-43-8116-01 3 38739260 38739260 C A SCN10A Missense_Mutation p.E1817D 0.37 tolerated(0.1) benign(0.004) TCGA-43-8116-01 3 38770103 38770103 C A SCN10A Missense_Mutation p.C857F 0.30 deleterious(0) probably_damaging(0.991) TCGA-43-8116-01 3 39108349 39108349 C G WDR48 Nonsense_Mutation p.S155* 0.28 TCGA-43-8116-01 3 39184680 39184680 C A CSRNP1 Missense_Mutation p.G546W 0.41 tolerated(0.16) possibly_damaging(0.8) TCGA-43-8116-01 3 45038690 45038690 G T EXOSC7 Missense_Mutation p.K122N 0.14 tolerated(0.06) benign(0.017) TCGA-43-8116-01 3 46621529 46621529 C T TDGF1 Nonsense_Mutation p.Q143* 0.41 TCGA-43-8116-01 3 46621530 46621530 A C TDGF1 Missense_Mutation p.Q143P 0.41 deleterious(0) probably_damaging(0.995) TCGA-43-8116-01 3 49200975 49200975 G A CCDC71 Missense_Mutation p.P223S 0.35 tolerated(0.9) benign(0.061) TCGA-43-8116-01 3 50295148 50295148 T C GNAI2 Splice_Site 0.26 TCGA-43-8116-01 3 51264838 51264838 G A DOCK3 Missense_Mutation p.R501Q 0.39 tolerated(0.13) possibly_damaging(0.724) TCGA-43-8116-01 3 66023696 66023696 G C MAGI1 Silent p.A96A 0.25 TCGA-43-8116-01 3 96962907 96962907 T C EPHA6 Missense_Mutation p.V461A 0.37 tolerated(0.1) benign(0.046) TCGA-43-8116-01 4 109766361 109766361 C G COL25A1 Missense_Mutation p.G521A 0.16 deleterious(0.04) probably_damaging(0.987) TCGA-43-8116-01 4 114257179 114257179 G T ANK2 Missense_Mutation p.G1186V 0.10 probably_damaging(1) TCGA-43-8116-01 4 13603780 13603780 C G BOD1L1 Missense_Mutation p.E1582Q 0.47 possibly_damaging(0.489) TCGA-43-8116-01 4 148407224 148407224 G A EDNRA Missense_Mutation p.V131I 0.30 tolerated(0.6) benign(0.05) TCGA-43-8116-01 4 170674908 170674908 T C C4orf27 Missense_Mutation p.N43D 0.38 tolerated(0.46) benign(0.001) TCGA-43-8116-01 4 248225 248225 G A ZNF876P RNA 0.13 TCGA-43-8116-01 4 3319414 3319414 C G RGS12 Missense_Mutation p.S506C 0.05 deleterious(0.04) benign(0.006) TCGA-43-8116-01 4 3449329 3449329 C G HGFAC Missense_Mutation p.S489W 0.05 deleterious(0) probably_damaging(1) TCGA-43-8116-01 4 44177144 44177144 C A KCTD8 Missense_Mutation p.S362I 0.45 deleterious(0.01) benign(0.331) TCGA-43-8116-01 4 44450091 44450091 G T KCTD8 Silent p.V150V 0.11 TCGA-43-8116-01 4 47427744 47427744 G C GABRB1 Silent p.T378T 0.32 TCGA-43-8116-01 4 4864425 4864425 C G MSX1 Intron 0.60 TCGA-43-8116-01 4 527729 527729 G T PIGG Missense_Mutation p.W898C 0.45 deleterious(0) probably_damaging(0.999) TCGA-43-8116-01 4 55153687 55153687 C G PDGFRA Missense_Mutation p.L885V 0.19 deleterious(0) probably_damaging(0.997) TCGA-43-8116-01 4 55948208 55948208 C T KDR Missense_Mutation p.D1255N 0.06 deleterious(0.03) benign(0.208) TCGA-43-8116-01 4 56837555 56837555 T C CEP135 Silent p.V410V 0.22 TCGA-43-8116-01 4 71522212 71522212 A G IGJ Missense_Mutation p.I105T 0.22 tolerated(0.18) benign(0.017) TCGA-43-8116-01 4 87150 87150 C T Z95704.2 RNA 0.12 TCGA-43-8116-01 4 89018626 89018626 G T ABCG2 Silent p.T542T 0.32 TCGA-43-8116-01 4 90833156 90833156 T A MMRN1 Missense_Mutation p.W269R 0.14 deleterious(0) probably_damaging(1) TCGA-43-8116-01 4 90833157 90833157 G A MMRN1 Nonsense_Mutation p.W269* 0.13 TCGA-43-8116-01 4 96762237 96762237 G T PDHA2 Missense_Mutation p.R312S 0.23 tolerated(0.92) benign(0) TCGA-43-8116-01 5 115146889 115146889 G T CDO1 Silent p.V124V 0.41 TCGA-43-8116-01 5 126676308 126676308 G A MEGF10 Missense_Mutation p.G102E 0.43 tolerated(0.22) benign(0.001) TCGA-43-8116-01 5 127609646 127609646 C A FBN2 Missense_Mutation p.G2576W 0.32 tolerated(0.11) possibly_damaging(0.886) TCGA-43-8116-01 5 127670870 127670870 G T FBN2 Missense_Mutation p.T1322K 0.37 tolerated(0.06) benign(0.133) TCGA-43-8116-01 5 127697462 127697462 C A FBN2 Silent p.T836T 0.36 TCGA-43-8116-01 5 137906752 137906752 T C HSPA9 Missense_Mutation p.M103V 0.07 tolerated_low_confidence(0.61) benign(0.005) TCGA-43-8116-01 5 139494021 139494021 C T PURA Silent p.F85F 0.25 TCGA-43-8116-01 5 140255856 140255856 T A PCDHA12 Missense_Mutation p.S267T 0.48 tolerated_low_confidence(0.4) benign(0.312) TCGA-43-8116-01 5 140256998 140256998 G T PCDHA12 Silent p.L647L 0.43 TCGA-43-8116-01 5 140503452 140503452 C T PCDHB4 Silent p.R624R 0.41 TCGA-43-8116-01 5 140736755 140736755 C A PCDHGA4 Missense_Mutation p.A663D 0.46 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-43-8116-01 5 140752016 140752016 G T PCDHGB3 Missense_Mutation p.Q685H 0.38 deleterious(0) possibly_damaging(0.468) TCGA-43-8116-01 5 141318105 141318105 G C KIAA0141 Silent p.L443L 0.22 TCGA-43-8116-01 5 154394661 154394661 C A KIF4B Silent p.A414A 0.25 TCGA-43-8116-01 5 154394662 154394662 C A KIF4B Missense_Mutation p.Q415K 0.25 tolerated(0.2) benign(0.059) TCGA-43-8116-01 5 176966044 176966044 C A FAM193B Missense_Mutation p.Q105H 0.59 tolerated(0.35) probably_damaging(0.937) TCGA-43-8116-01 5 178413197 178413197 G C GRM6 Silent p.V686V 0.23 TCGA-43-8116-01 5 35003922 35003922 A C AGXT2 Missense_Mutation p.H461Q 0.37 deleterious(0.04) benign(0.125) TCGA-43-8116-01 5 35065912 35065912 G C PRLR Missense_Mutation p.P383R 0.23 tolerated(0.33) benign(0.312) TCGA-43-8116-01 5 35065913 35065913 G T PRLR Missense_Mutation p.P383T 0.23 tolerated(0.43) benign(0.05) TCGA-43-8116-01 5 35876415 35876415 G C IL7R Missense_Mutation p.D403H 0.20 tolerated(0.28) probably_damaging(0.937) TCGA-43-8116-01 5 36152262 36152262 C G SKP2 5'UTR 0.50 TCGA-43-8116-01 5 39202848 39202848 T C FYB Missense_Mutation p.E82G 0.19 deleterious(0.01) possibly_damaging(0.662) TCGA-43-8116-01 5 40999867 40999867 C A MROH2B Missense_Mutation p.Q1499H 0.27 tolerated(0.14) possibly_damaging(0.769) TCGA-43-8116-01 5 41201797 41201797 A G C6 Missense_Mutation p.Y55H 0.27 tolerated(0.08) probably_damaging(0.995) TCGA-43-8116-01 5 42699938 42699938 C T GHR Missense_Mutation p.P151L 0.32 deleterious(0) probably_damaging(0.999) TCGA-43-8116-01 5 43613184 43613184 C T NNT Missense_Mutation p.A109V 0.25 tolerated(0.12) benign(0.024) TCGA-43-8116-01 5 54416276 54416276 G T CDC20B Missense_Mutation p.Q440K 0.44 tolerated(0.19) benign(0.087) TCGA-43-8116-01 5 54416277 54416277 G T CDC20B Silent p.I439I 0.45 TCGA-43-8116-01 5 70855995 70855995 G T BDP1 Missense_Mutation p.R2476I 0.33 deleterious(0.01) possibly_damaging(0.568) TCGA-43-8116-01 5 71756724 71756724 C T ZNF366 Silent p.R200R 0.26 TCGA-43-8116-01 5 75427665 75427665 G A SV2C Silent p.V30V 0.47 TCGA-43-8116-01 5 7869243 7869243 G A MTRR 5'UTR 0.30 TCGA-43-8116-01 6 108042035 108042035 C A SCML4 Missense_Mutation p.G282V 0.29 tolerated(0.09) benign(0.005) TCGA-43-8116-01 6 111697910 111697910 T C REV3L Missense_Mutation p.T550A 0.33 tolerated(0.13) benign(0.326) TCGA-43-8116-01 6 117862172 117862172 G - DCBLD1 Frame_Shift_Del p.E448Kfs*7 0.22 TCGA-43-8116-01 6 127797328 127797328 G A SOGA3 Silent p.L615L 0.30 TCGA-43-8116-01 6 136599724 136599724 T C BCLAF1 Missense_Mutation p.R99G 0.21 deleterious_low_confidence(0) unknown(0) TCGA-43-8116-01 6 139210108 139210108 T A ECT2L Missense_Mutation p.I785N 0.45 deleterious(0) probably_damaging(0.915) TCGA-43-8116-01 6 144801063 144801063 G T UTRN Missense_Mutation p.R1151L 0.22 deleterious(0.03) possibly_damaging(0.58) TCGA-43-8116-01 6 151686764 151686764 G A ZBTB2 Silent p.D479D 0.13 TCGA-43-8116-01 6 160200777 160200777 G C TCP1 Missense_Mutation p.L446V 0.18 deleterious(0) probably_damaging(0.952) TCGA-43-8116-01 6 17292271 17292271 C G RBM24 Missense_Mutation p.A211G 0.42 tolerated(0.15) benign(0.384) TCGA-43-8116-01 6 28403674 28403674 C T ZSCAN23 Missense_Mutation p.E124K 0.15 deleterious(0) probably_damaging(0.999) TCGA-43-8116-01 6 28967712 28967712 A T ZNF311 Intron 0.30 TCGA-43-8116-01 6 29429904 29429904 C G OR2H1 Missense_Mutation p.R120G 0.22 deleterious(0) benign(0.333) TCGA-43-8116-01 6 31497585 31497585 T C MCCD1 Missense_Mutation p.L78P 0.13 tolerated(0.06) probably_damaging(0.984) TCGA-43-8116-01 6 31683182 31683182 C T LY6G6D Missense_Mutation p.A17V 0.28 tolerated(0.12) benign(0.001) TCGA-43-8116-01 6 34386165 34386165 G A RPS10 Missense_Mutation p.S146L 0.36 tolerated(0.13) benign(0.086) TCGA-43-8116-01 6 35959551 35959551 G C SLC26A8 Missense_Mutation p.A276G 0.33 deleterious(0) probably_damaging(0.996) TCGA-43-8116-01 6 37186596 37186596 G A TMEM217 Silent p.L71L 0.16 TCGA-43-8116-01 6 38854682 38854682 C A DNAH8 Missense_Mutation p.P2575H 0.17 probably_damaging(1) TCGA-43-8116-01 6 39864985 39864985 C A DAAM2 Missense_Mutation p.L849M 0.18 tolerated(0.09) possibly_damaging(0.882) TCGA-43-8116-01 6 87725578 87725578 C A HTR1E Missense_Mutation p.Q176K 0.27 tolerated(0.4) benign(0.002) TCGA-43-8116-01 6 97679340 97679340 C T MMS22L Silent p.K497K 0.24 TCGA-43-8116-01 7 100377154 100377154 G A ZAN Missense_Mutation p.R2134H 0.38 unknown(0) TCGA-43-8116-01 7 100686841 100686841 A G MUC17 Silent p.S4048S 0.24 TCGA-43-8116-01 7 103141279 103141279 G A RELN Silent p.C2860C 0.35 TCGA-43-8116-01 7 108137159 108137159 G A PNPLA8 Silent p.P498P 0.23 TCGA-43-8116-01 7 117864851 117864851 C A ANKRD7 5'UTR 0.24 TCGA-43-8116-01 7 123595124 123595124 G C SPAM1 Missense_Mutation p.S343T 0.24 tolerated(0.09) benign(0.014) TCGA-43-8116-01 7 127255499 127255499 C T PAX4 Missense_Mutation p.A26T 0.19 deleterious(0) probably_damaging(0.999) TCGA-43-8116-01 7 131912274 131912274 C A PLXNA4 Silent p.V606V 0.24 TCGA-43-8116-01 7 132990730 132990730 G C EXOC4 Missense_Mutation p.V191L 0.17 tolerated(0.4) benign(0.391) TCGA-43-8116-01 7 133622814 133622814 C T EXOC4 Missense_Mutation p.T733I 0.39 tolerated(0.22) benign(0.013) TCGA-43-8116-01 7 136700033 136700033 G T CHRM2 Missense_Mutation p.G141C 0.21 deleterious(0.01) probably_damaging(0.952) TCGA-43-8116-01 7 138417659 138417659 T C ATP6V0A4 Missense_Mutation p.Y624C 0.29 tolerated(0.11) probably_damaging(0.987) TCGA-43-8116-01 7 142460355 142460355 T A PRSS1 Silent p.P176P 0.14 TCGA-43-8116-01 7 142460901 142460901 C A PRSS1 3'UTR 0.35 TCGA-43-8116-01 7 149483213 149483213 C A SSPO RNA 0.30 TCGA-43-8116-01 7 150069120 150069120 C T REPIN1 Missense_Mutation p.H321Y 0.22 tolerated(0.74) probably_damaging(0.999) TCGA-43-8116-01 7 150738196 150738196 C A ABCB8 Silent p.T498T 0.21 TCGA-43-8116-01 7 150921881 150921881 G C ABCF2 Silent p.L116L 0.25 TCGA-43-8116-01 7 154645501 154645501 C T DPP6 Missense_Mutation p.P560S 0.20 deleterious(0) probably_damaging(0.944) TCGA-43-8116-01 7 2279112 2279112 C A FTSJ2 Missense_Mutation p.G80V 0.42 deleterious(0.03) probably_damaging(1) TCGA-43-8116-01 7 2579220 2579220 A C BRAT1 Missense_Mutation p.S519A 0.12 deleterious(0) probably_damaging(0.999) TCGA-43-8116-01 7 27135109 27135109 C T HOXA1 Silent p.Q141Q 0.25 TCGA-43-8116-01 7 27135110 27135110 T G HOXA1 Missense_Mutation p.Q141P 0.27 tolerated(0.46) probably_damaging(0.923) TCGA-43-8116-01 7 27147512 27147512 G T HOXA3 3'UTR 0.14 TCGA-43-8116-01 7 27689243 27689243 C G HIBADH Missense_Mutation p.R34T 0.16 tolerated(0.05) benign(0.012) TCGA-43-8116-01 7 28996129 28996129 G T AC005013.5 5'Flank 0.19 TCGA-43-8116-01 7 31887703 31887703 G T PDE1C Missense_Mutation p.P347T 0.24 tolerated(1) benign(0.015) TCGA-43-8116-01 7 36895197 36895197 T A ELMO1 Nonsense_Mutation p.K715* 0.20 TCGA-43-8116-01 7 48317991 48317991 G A ABCA13 Silent p.E2400E 0.25 TCGA-43-8116-01 7 48335311 48335311 A G ABCA13 Missense_Mutation p.I2990M 0.20 benign(0.028) TCGA-43-8116-01 7 50660783 50660783 C G GRB10 Missense_Mutation p.G551R 0.24 deleterious(0) probably_damaging(0.975) TCGA-43-8116-01 7 65705691 65705691 T A TPST1 Silent p.P93P 0.08 TCGA-43-8116-01 7 82578892 82578892 G C PCLO Missense_Mutation p.T3671R 0.22 unknown(0) TCGA-43-8116-01 7 86415720 86415720 C A GRM3 Silent p.I204I 0.19 TCGA-43-8116-01 7 93090135 93090135 G T CALCR Missense_Mutation p.P250T 0.32 deleterious(0) probably_damaging(0.994) TCGA-43-8116-01 7 98562332 98562332 C T TRRAP Silent p.L2297L 0.27 TCGA-43-8116-01 8 103852015 103852015 T C AZIN1 Missense_Mutation p.K47E 0.06 tolerated(0.5) benign(0.165) TCGA-43-8116-01 8 105361774 105361774 C A DCSTAMP Missense_Mutation p.P332T 0.36 deleterious(0) probably_damaging(0.999) TCGA-43-8116-01 8 114110992 114110992 T C CSMD3 Missense_Mutation p.T304A 0.22 tolerated(0.17) benign(0.007) TCGA-43-8116-01 8 120612985 120612985 G T ENPP2 Nonsense_Mutation p.S302* 0.16 TCGA-43-8116-01 8 121240959 121240959 T A COL14A1 Missense_Mutation p.F716L 0.13 tolerated(0.65) benign(0.001) TCGA-43-8116-01 8 139164191 139164191 C A FAM135B Nonsense_Mutation p.G843* 0.32 TCGA-43-8116-01 8 144897475 144897475 G A SCRIB Missense_Mutation p.S23L 0.26 benign(0.02) TCGA-43-8116-01 8 145006568 145006568 C T PLEC Silent p.S796S 0.15 TCGA-43-8116-01 8 145948181 145948181 A T ZNF251 Silent p.T288T 0.14 TCGA-43-8116-01 8 28976483 28976483 G T KIF13B Missense_Mutation p.L1188I 0.31 tolerated(0.14) benign(0.347) TCGA-43-8116-01 8 33247070 33247070 C G FUT10 Missense_Mutation p.R208T 0.13 deleterious(0) probably_damaging(0.992) TCGA-43-8116-01 8 37702190 37702190 G A BRF2 Missense_Mutation p.P360S 0.11 deleterious(0) probably_damaging(0.996) TCGA-43-8116-01 8 41573332 41573332 G - ANK1 Frame_Shift_Del p.I513Mfs*7 0.28 TCGA-43-8116-01 8 42401646 42401646 G C SMIM19 Missense_Mutation p.D11H 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.695) TCGA-43-8116-01 8 48641525 48641525 G T SPIDR Silent p.R822R 0.24 TCGA-43-8116-01 8 48802874 48802874 C - PRKDC Frame_Shift_Del p.V1338Sfs*11 0.21 TCGA-43-8116-01 8 51351117 51351117 C T SNTG1 Silent p.T59T 0.39 TCGA-43-8116-01 8 59720342 59720342 C A TOX Silent p.G515G 0.28 TCGA-43-8116-01 8 62212836 62212836 G T CLVS1 Missense_Mutation p.Q150H 0.39 tolerated(0.53) probably_damaging(0.968) TCGA-43-8116-01 8 62366760 62366760 G T CLVS1 Missense_Mutation p.A231S 0.24 tolerated(0.11) possibly_damaging(0.612) TCGA-43-8116-01 8 66988980 66988980 G C DNAJC5B Missense_Mutation p.A69P 0.30 deleterious(0.01) possibly_damaging(0.581) TCGA-43-8116-01 8 70981670 70981670 C A PRDM14 Silent p.P142P 0.10 TCGA-43-8116-01 8 77775695 77775695 G T ZFHX4 Missense_Mutation p.A3249S 0.18 benign(0.208) TCGA-43-8116-01 8 82355592 82355592 C T PMP2 3'UTR 0.32 TCGA-43-8116-01 8 85441807 85441807 C A RALYL Missense_Mutation p.P97Q 0.19 deleterious(0.04) benign(0.074) TCGA-43-8116-01 8 88885494 88885494 T C DCAF4L2 Missense_Mutation p.T236A 0.34 tolerated(0.71) benign(0.003) TCGA-43-8116-01 8 93004090 93004090 C A RUNX1T1 Missense_Mutation p.E267D 0.22 tolerated(1) benign(0) TCGA-43-8116-01 9 104313026 104313026 G T RNF20 Missense_Mutation p.G411C 0.30 deleterious(0.02) probably_damaging(0.965) TCGA-43-8116-01 9 113197521 113197521 C T SVEP1 Missense_Mutation p.D1630N 0.58 probably_damaging(0.936) TCGA-43-8116-01 9 118949471 118949471 G T PAPPA Nonsense_Mutation p.G152* 0.30 TCGA-43-8116-01 9 119737487 119737487 C T ASTN2 Missense_Mutation p.R579K 0.40 deleterious(0) unknown(0) TCGA-43-8116-01 9 134014708 134014708 C T NUP214 Missense_Mutation p.A349V 0.30 unknown(0) TCGA-43-8116-01 9 138416984 138416984 G T LCN1 Missense_Mutation p.C171F 0.64 deleterious(0) possibly_damaging(0.902) TCGA-43-8116-01 9 140943738 140943738 C T CACNA1B Silent p.V1227V 0.13 TCGA-43-8116-01 9 2646515 2646515 C T VLDLR Nonsense_Mutation p.R556* 0.15 TCGA-43-8116-01 9 27524342 27524342 C A IFNK Missense_Mutation p.T3N 0.37 deleterious(0.01) possibly_damaging(0.548) TCGA-43-8116-01 9 37015126 37015126 G A PAX5 Missense_Mutation p.P93L 0.10 deleterious(0) probably_damaging(0.962) TCGA-43-8116-01 9 87570340 87570340 G C NTRK2 Missense_Mutation p.A694P 0.22 deleterious(0) probably_damaging(0.999) TCGA-43-8116-01 X 113949683 113949683 G T HTR2C Intron 0.61 TCGA-43-8116-01 X 122616866 122616866 G A GRIA3 Missense_Mutation p.V886M 0.11 tolerated_low_confidence(0.06) probably_damaging(0.964) TCGA-43-8116-01 X 140992790 140992790 G C MAGEC1 5'UTR 0.44 TCGA-43-8116-01 X 152821817 152821817 G T ATP2B3 Missense_Mutation p.W756L 0.53 deleterious(0.01) probably_damaging(0.984) TCGA-43-8116-01 X 153761211 153761211 T C G6PD Missense_Mutation p.T363A 0.45 tolerated(0.46) benign(0.043) TCGA-43-8116-01 X 155119226 155119226 C G VAMP7 Missense_Mutation p.L33V 0.24 deleterious(0.01) possibly_damaging(0.492) TCGA-43-8116-01 X 48762124 48762124 G A SLC35A2 Silent p.S354S 0.42 TCGA-43-8116-01 X 65392263 65392263 T C HEPH Silent p.Y132Y 0.61 TCGA-43-8116-01 X 79286333 79286333 C A TBX22 Missense_Mutation p.S429Y 0.50 tolerated(0.78) benign(0.035) TCGA-43-8116-01 Y 6115658 6115658 G T TSPY2 Missense_Mutation p.S207I 0.15 tolerated(0.17) possibly_damaging(0.579) TCGA-43-8118-01 10 104572972 104572972 G T WBP1L Nonsense_Mutation p.E326* 0.20 TCGA-43-8118-01 10 112653869 112653869 A G PDCD4 Silent p.E337E 0.12 TCGA-43-8118-01 10 115534679 115534679 G A PLEKHS1 Missense_Mutation p.E286K 0.15 tolerated(0.06) possibly_damaging(0.614) TCGA-43-8118-01 10 116593078 116593078 G T FAM160B1 Nonsense_Mutation p.E71* 0.16 TCGA-43-8118-01 10 118957024 118957024 G A KCNK18 Missense_Mutation p.A9T 0.12 tolerated(0.3) benign(0.007) TCGA-43-8118-01 10 12240702 12240702 A - CDC123 Splice_Site p.X25_splice 0.16 TCGA-43-8118-01 10 127782604 127782604 G A ADAM12 Silent p.S368S 0.26 TCGA-43-8118-01 10 131666110 131666110 A T EBF3 Missense_Mutation p.I274K 0.30 deleterious(0) possibly_damaging(0.666) TCGA-43-8118-01 10 13370439 13370439 C T SEPHS1 Nonsense_Mutation p.W221* 0.11 TCGA-43-8118-01 10 134210811 134210811 C A PWWP2B Nonsense_Mutation p.C27* 0.25 TCGA-43-8118-01 10 135020463 135020463 T C KNDC1 Intron 0.20 TCGA-43-8118-01 10 135020639 135020639 A T KNDC1 Splice_Site p.X1194_splice 0.35 TCGA-43-8118-01 10 135020785 135020785 G T KNDC1 Missense_Mutation p.G1242C 0.15 tolerated(0.48) benign(0.003) TCGA-43-8118-01 10 15138525 15138525 T A C10orf111 Missense_Mutation p.Y100F 0.17 tolerated_low_confidence(0.1) unknown(0) TCGA-43-8118-01 10 18276533 18276533 G T SLC39A12 Missense_Mutation p.A408S 0.14 deleterious(0) probably_damaging(1) TCGA-43-8118-01 10 24813663 24813663 G T KIAA1217 Silent p.V956V 0.27 TCGA-43-8118-01 10 26414423 26414423 C A MYO3A Missense_Mutation p.T667N 0.17 deleterious(0.03) benign(0.326) TCGA-43-8118-01 10 26785240 26785240 G T APBB1IP Missense_Mutation p.G27V 0.05 deleterious(0) possibly_damaging(0.758) TCGA-43-8118-01 10 33224472 33224472 T A ITGB1 Silent p.P5P 0.10 TCGA-43-8118-01 10 37419150 37419150 G A ANKRD30A Silent p.Q62Q 0.13 TCGA-43-8118-01 10 50944205 50944205 C T OGDHL Missense_Mutation p.D925N 0.09 deleterious(0.01) benign(0.124) TCGA-43-8118-01 10 54053592 54053592 G C PRKG1 Missense_Mutation p.D665H 0.12 deleterious(0) probably_damaging(1) TCGA-43-8118-01 10 55721574 55721574 C G PCDH15 Missense_Mutation p.E983Q 0.22 tolerated(0.13) possibly_damaging(0.673) TCGA-43-8118-01 10 63852130 63852130 G A ARID5B Missense_Mutation p.E970K 0.09 deleterious(0.03) probably_damaging(0.952) TCGA-43-8118-01 10 64979710 64979710 C T JMJD1C Missense_Mutation p.D161N 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-43-8118-01 10 67748452 67748452 G A CTNNA3 Nonsense_Mutation p.Q755* 0.25 TCGA-43-8118-01 10 67829139 67829139 C A CTNNA3 Missense_Mutation p.D696Y 0.23 deleterious(0) unknown(0) TCGA-43-8118-01 10 69966634 69966634 C G MYPN Missense_Mutation p.S1256W 0.24 deleterious(0) probably_damaging(1) TCGA-43-8118-01 10 71718556 71718556 C T COL13A1 3'UTR 0.35 TCGA-43-8118-01 10 7657950 7657950 G A ITIH5 Missense_Mutation p.R312W 0.16 deleterious(0) probably_damaging(0.924) TCGA-43-8118-01 10 8115948 8115948 C A GATA3 Missense_Mutation p.P433T 0.13 tolerated(0.4) possibly_damaging(0.628) TCGA-43-8118-01 10 82112213 82112213 G C DYDC1 Missense_Mutation p.L49V 0.38 tolerated(0.22) benign(0.011) TCGA-43-8118-01 10 85991873 85991873 T C LRIT1 Missense_Mutation p.N561S 0.22 tolerated(0.57) benign(0) TCGA-43-8118-01 10 87362327 87362327 G T GRID1 Silent p.T911T 0.09 TCGA-43-8118-01 10 90427346 90427346 G T LIPF Missense_Mutation p.W52C 0.29 deleterious(0.04) probably_damaging(1) TCGA-43-8118-01 10 99150569 99150569 G C RRP12 Missense_Mutation p.S188C 0.14 deleterious(0.01) possibly_damaging(0.627) TCGA-43-8118-01 11 100920674 100920674 A T PGR Nonsense_Mutation p.L825* 0.18 TCGA-43-8118-01 11 117389228 117389228 C A DSCAML1 Missense_Mutation p.R548L 0.23 tolerated(0.26) possibly_damaging(0.808) TCGA-43-8118-01 11 117691432 117691432 A C FXYD2 Intron 0.09 TCGA-43-8118-01 11 118374630 118374630 A G KMT2A Missense_Mutation p.S2675G 0.31 probably_damaging(0.977) TCGA-43-8118-01 11 118550270 118550270 C A TREH Missense_Mutation p.A23S 0.24 tolerated(0.4) benign(0.154) TCGA-43-8118-01 11 119206296 119206296 G A RNF26 Missense_Mutation p.C155Y 0.13 deleterious(0.02) benign(0.316) TCGA-43-8118-01 11 120186131 120186131 G A POU2F3 Missense_Mutation p.G379E 0.06 deleterious(0.01) possibly_damaging(0.804) TCGA-43-8118-01 11 120352173 120352173 G T ARHGEF12 Missense_Mutation p.G1481V 0.11 deleterious_low_confidence(0.04) benign(0.273) TCGA-43-8118-01 11 123513331 123513331 C G SCN3B Missense_Mutation p.G90R 0.30 deleterious(0.01) possibly_damaging(0.896) TCGA-43-8118-01 11 124481537 124481537 C T PANX3 Missense_Mutation p.R29C 0.15 deleterious(0.02) benign(0.38) TCGA-43-8118-01 11 124489220 124489220 C A PANX3 Missense_Mutation p.P190T 0.27 deleterious(0) benign(0.405) TCGA-43-8118-01 11 129321283 129321283 C A BARX2 Missense_Mutation p.P276T 0.13 deleterious_low_confidence(0.05) unknown(0) TCGA-43-8118-01 11 17428935 17428935 C A ABCC8 Missense_Mutation p.R962S 0.09 tolerated(0.05) benign(0.029) TCGA-43-8118-01 11 17542446 17542446 A T USH1C Missense_Mutation p.V394E 0.26 deleterious_low_confidence(0) benign(0.007) TCGA-43-8118-01 11 18254000 18254000 C A SAA4 Nonsense_Mutation p.G58* 0.19 TCGA-43-8118-01 11 22384359 22384359 T C SLC17A6 Missense_Mutation p.F246L 0.13 deleterious(0) possibly_damaging(0.859) TCGA-43-8118-01 11 30033995 30033995 C T KCNA4 Silent p.Q77Q 0.29 TCGA-43-8118-01 11 34112191 34112191 A T CAPRIN1 Missense_Mutation p.N507I 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-43-8118-01 11 35684822 35684822 C T TRIM44 Missense_Mutation p.H55Y 0.07 deleterious(0) probably_damaging(0.99) TCGA-43-8118-01 11 3687739 3687739 G A CHRNA10 Silent p.I317I 0.15 TCGA-43-8118-01 11 44253983 44253983 G T EXT2 Missense_Mutation p.K614N 0.18 deleterious(0.03) probably_damaging(0.981) TCGA-43-8118-01 11 45672420 45672420 G C CHST1 Missense_Mutation p.I18M 0.14 deleterious(0) probably_damaging(0.959) TCGA-43-8118-01 11 46406768 46406768 G A CHRM4 Missense_Mutation p.T447I 0.20 deleterious(0) probably_damaging(0.998) TCGA-43-8118-01 11 4945041 4945041 C A OR51G1 Missense_Mutation p.A177S 0.26 tolerated(1) benign(0.03) TCGA-43-8118-01 11 4945214 4945214 G T OR51G1 Missense_Mutation p.S119Y 0.27 deleterious(0.01) possibly_damaging(0.492) TCGA-43-8118-01 11 5274575 5274575 C A HBG2 Nonsense_Mutation p.E126* 0.12 TCGA-43-8118-01 11 5274612 5274612 G T HBG2 Silent p.T113T 0.17 TCGA-43-8118-01 11 55321811 55321811 A T OR4C15 Missense_Mutation p.N10I 0.18 deleterious_low_confidence(0) unknown(0) TCGA-43-8118-01 11 55594752 55594752 G C OR5L2 Missense_Mutation p.V20L 0.14 tolerated(0.58) benign(0.05) TCGA-43-8118-01 11 55655615 55655615 C T TRIM51 Silent p.G205G 0.13 TCGA-43-8118-01 11 55860827 55860827 C T OR8I2 Missense_Mutation p.S15F 0.13 tolerated(0.06) probably_damaging(0.998) TCGA-43-8118-01 11 55927621 55927621 G A OR8K5 Missense_Mutation p.P58L 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-43-8118-01 11 5653527 5653527 G T TRIM6-TRIM34 Missense_Mutation p.G343V 0.12 tolerated(0.37) benign(0.021) TCGA-43-8118-01 11 57080046 57080046 C A TNKS1BP1 Nonsense_Mutation p.E706* 0.28 TCGA-43-8118-01 11 59245457 59245457 C A OR4D10 Silent p.L185L 0.27 TCGA-43-8118-01 11 60229937 60229937 C G MS4A1 Silent p.L30L 0.26 TCGA-43-8118-01 11 60482518 60482518 G A MS4A8 Missense_Mutation p.V187M 0.12 tolerated(0.53) possibly_damaging(0.69) TCGA-43-8118-01 11 60558546 60558546 C G MS4A10 Missense_Mutation p.P95A 0.27 deleterious(0) probably_damaging(1) TCGA-43-8118-01 11 6129463 6129463 G T OR56B4 Missense_Mutation p.G152V 0.20 tolerated(0.61) benign(0.006) TCGA-43-8118-01 11 62286129 62286129 C A AHNAK Nonsense_Mutation p.E5254* 0.22 TCGA-43-8118-01 11 63138697 63138697 C T SLC22A9 Missense_Mutation p.H165Y 0.26 tolerated(0.43) benign(0.034) TCGA-43-8118-01 11 6340213 6340213 C A PRKCDBP 3'UTR 0.30 TCGA-43-8118-01 11 64052008 64052008 G T BAD 5'UTR 0.25 TCGA-43-8118-01 11 6423333 6423333 C A APBB1 Missense_Mutation p.G454V 0.20 deleterious(0) probably_damaging(0.969) TCGA-43-8118-01 11 64402821 64402821 G A NRXN2 Silent p.F1169F 0.13 TCGA-43-8118-01 11 65003918 65003918 A T SLC22A20 RNA 0.14 TCGA-43-8118-01 11 65325230 65325230 C A LTBP3 Silent p.A67A 0.12 TCGA-43-8118-01 11 65988228 65988228 G C PACS1 Missense_Mutation p.E389Q 0.08 tolerated(0.05) possibly_damaging(0.864) TCGA-43-8118-01 11 66031349 66031349 G C KLC2 Missense_Mutation p.V290L 0.10 tolerated(0.1) benign(0.073) TCGA-43-8118-01 11 66062130 66062130 T A TMEM151A Missense_Mutation p.L138Q 0.23 tolerated(0.06) benign(0.342) TCGA-43-8118-01 11 67271652 67271652 C G PITPNM1 5'UTR 0.18 TCGA-43-8118-01 11 67400504 67400504 C T TBX10 Missense_Mutation p.S207N 0.15 tolerated(0.12) benign(0.318) TCGA-43-8118-01 11 6790026 6790026 G T OR2AG2 Missense_Mutation p.L55I 0.23 deleterious(0) probably_damaging(0.999) TCGA-43-8118-01 11 6913533 6913533 A G OR2D2 Missense_Mutation p.S67P 0.19 deleterious(0) probably_damaging(0.98) TCGA-43-8118-01 11 71146645 71146645 C A DHCR7 Missense_Mutation p.V402L 0.25 tolerated(0.53) benign(0.034) TCGA-43-8118-01 11 74168483 74168483 C A KCNE3 Missense_Mutation p.Q42H 0.31 tolerated(0.36) benign(0.002) TCGA-43-8118-01 11 88780923 88780923 G C GRM5 Missense_Mutation p.L40V 0.13 deleterious(0) probably_damaging(0.99) TCGA-43-8118-01 11 8936404 8936404 G T AKIP1 Missense_Mutation p.G112V 0.21 deleterious(0.03) probably_damaging(0.999) TCGA-43-8118-01 11 89420564 89420564 G T FOLH1B RNA 0.17 TCGA-43-8118-01 11 99827672 99827672 C A CNTN5 Missense_Mutation p.L270M 0.19 tolerated(0.05) probably_damaging(0.994) TCGA-43-8118-01 12 100452785 100452785 C T UHRF1BP1L Missense_Mutation p.S757N 0.21 tolerated(0.32) benign(0.008) TCGA-43-8118-01 12 100657640 100657640 T C DEPDC4 Silent p.L63L 0.27 TCGA-43-8118-01 12 101368575 101368575 G T ANO4 Intron 0.18 TCGA-43-8118-01 12 101748759 101748759 A G UTP20 Missense_Mutation p.K1753E 0.19 tolerated(0.91) benign(0.002) TCGA-43-8118-01 12 10225927 10225927 C A CLEC1A Missense_Mutation p.W209C 0.19 deleterious(0) probably_damaging(1) TCGA-43-8118-01 12 108589574 108589574 C A WSCD2 5'UTR 0.23 TCGA-43-8118-01 12 108589854 108589854 C T WSCD2 Missense_Mutation p.A82V 0.10 tolerated(0.3) benign(0.003) TCGA-43-8118-01 12 108686153 108686153 G A CMKLR1 Missense_Mutation p.S196F 0.25 deleterious(0) benign(0.213) TCGA-43-8118-01 12 108985597 108985597 C A TMEM119 Missense_Mutation p.R188M 0.17 deleterious(0) probably_damaging(0.971) TCGA-43-8118-01 12 109536193 109536193 G T UNG Intron 0.21 TCGA-43-8118-01 12 112486133 112486133 C T NAA25 Missense_Mutation p.E615K 0.31 deleterious(0) probably_damaging(1) TCGA-43-8118-01 12 11420359 11420359 C G PRB3 Missense_Mutation p.G233A 0.13 deleterious(0) unknown(0) TCGA-43-8118-01 12 118490117 118490117 C A WSB2 Missense_Mutation p.Q60H 0.27 tolerated(0.11) benign(0.135) TCGA-43-8118-01 12 120210579 120210579 C A CIT Missense_Mutation p.A693S 0.26 tolerated(0.83) benign(0.059) TCGA-43-8118-01 12 120502495 120502495 G T CCDC64 Intron 0.15 TCGA-43-8118-01 12 120650061 120650061 C T PXN 3'UTR 0.21 TCGA-43-8118-01 12 121431443 121431443 A T HNF1A Missense_Mutation p.Q216L 0.22 deleterious(0) benign(0.265) TCGA-43-8118-01 12 123749864 123749864 A T CDK2AP1 Silent p.T53T 0.12 TCGA-43-8118-01 12 130840148 130840148 C A PIWIL1 Missense_Mutation p.S447Y 0.14 deleterious(0.04) benign(0.003) TCGA-43-8118-01 12 130847544 130847544 A T PIWIL1 Missense_Mutation p.R684W 0.13 deleterious(0) probably_damaging(0.969) TCGA-43-8118-01 12 130921505 130921505 C A RIMBP2 Missense_Mutation p.G646V 0.19 deleterious(0.02) possibly_damaging(0.866) TCGA-43-8118-01 12 131471705 131471705 G C GPR133 Missense_Mutation p.G186R 0.31 deleterious(0.03) probably_damaging(0.966) TCGA-43-8118-01 12 132426276 132426276 G T PUS1 Silent p.A328A 0.28 TCGA-43-8118-01 12 13722811 13722811 C A GRIN2B Missense_Mutation p.G771V 0.20 tolerated(0.49) possibly_damaging(0.821) TCGA-43-8118-01 12 1749102 1749102 G T WNT5B Missense_Mutation p.R194L 0.12 deleterious(0.05) possibly_damaging(0.841) TCGA-43-8118-01 12 2055411 2055411 G C DCP1B Silent p.L605L 0.18 TCGA-43-8118-01 12 21459846 21459846 G T SLCO1A2 Missense_Mutation p.Q138K 0.23 tolerated(0.22) benign(0.41) TCGA-43-8118-01 12 21689871 21689871 T A GYS2 3'UTR 0.24 TCGA-43-8118-01 12 25261651 25261651 G A CASC1 Missense_Mutation p.A667V 0.18 tolerated(0.12) benign(0.049) TCGA-43-8118-01 12 32793545 32793545 G T FGD4 3'UTR 0.23 TCGA-43-8118-01 12 40637388 40637388 G C LRRK2 Missense_Mutation p.R248T 0.17 deleterious(0.01) possibly_damaging(0.907) TCGA-43-8118-01 12 40745387 40745387 G T LRRK2 Missense_Mutation p.R2143L 0.17 tolerated(0.59) benign(0.024) TCGA-43-8118-01 12 43837593 43837593 C A ADAMTS20 Splice_Site p.X764_splice 0.24 TCGA-43-8118-01 12 47471423 47471423 C T AMIGO2 Missense_Mutation p.A455T 0.07 tolerated(0.19) benign(0.003) TCGA-43-8118-01 12 48920030 48920030 C G OR8S1 Missense_Mutation p.H206D 0.12 tolerated(0.12) benign(0.179) TCGA-43-8118-01 12 49959357 49959357 T A MCRS1 Silent p.P94P 0.22 TCGA-43-8118-01 12 51495795 51495795 C T TFCP2 Silent p.L358L 0.06 TCGA-43-8118-01 12 520923 520923 G T CCDC77 Missense_Mutation p.V17F 0.10 tolerated_low_confidence(0.2) benign(0.003) TCGA-43-8118-01 12 52941758 52941758 C A KRT71 Missense_Mutation p.E329D 0.21 deleterious(0) probably_damaging(0.998) TCGA-43-8118-01 12 53170596 53170596 T A KRT76 Silent p.V160V 0.28 TCGA-43-8118-01 12 53723129 53723129 G C SP7 Missense_Mutation p.L33V 0.08 tolerated(0.54) benign(0.008) TCGA-43-8118-01 12 53861208 53861208 T C PCBP2 Intron 0.17 TCGA-43-8118-01 12 54676995 54676995 G C HNRNPA1 Missense_Mutation p.G295A 0.15 tolerated(0.43) unknown(0) TCGA-43-8118-01 12 56355461 56355461 C G PMEL Missense_Mutation p.W44C 0.08 deleterious(0) probably_damaging(1) TCGA-43-8118-01 12 57032033 57032033 T C ATP5B 3'UTR 0.20 TCGA-43-8118-01 12 57032193 57032193 G C ATP5B Missense_Mutation p.L502V 0.09 deleterious_low_confidence(0.01) benign(0.018) TCGA-43-8118-01 12 57553659 57553659 A G LRP1 Missense_Mutation p.Y617C 0.22 probably_damaging(1) TCGA-43-8118-01 12 57865117 57865117 A G GLI1 Missense_Mutation p.Y865C 0.23 tolerated(0.09) benign(0.011) TCGA-43-8118-01 12 63954281 63954281 T A DPY19L2 3'UTR 0.20 TCGA-43-8118-01 12 6729207 6729207 C A LPAR5 3'UTR 0.29 TCGA-43-8118-01 12 72030284 72030284 G A ZFC3H1 Nonsense_Mutation p.R696* 0.10 TCGA-43-8118-01 12 72233590 72233590 A T TBC1D15 Missense_Mutation p.K10M 0.11 deleterious(0) benign(0.02) TCGA-43-8118-01 12 75601404 75601404 G A KCNC2 Silent p.T120T 0.24 TCGA-43-8118-01 12 75672681 75672681 A T CAPS2 Intron 0.23 TCGA-43-8118-01 12 75807453 75807453 G T GLIPR1L2 Missense_Mutation p.A186S 0.19 deleterious(0.01) probably_damaging(0.972) TCGA-43-8118-01 12 78392166 78392166 C T NAV3 Nonsense_Mutation p.Q264* 0.22 TCGA-43-8118-01 12 78571030 78571030 A T NAV3 Missense_Mutation p.K1745M 0.14 deleterious(0) probably_damaging(1) TCGA-43-8118-01 12 7882201 7882201 G T CLEC4C Silent p.I211I 0.19 TCGA-43-8118-01 12 81769722 81769722 C A PPFIA2 Splice_Site p.X329_splice 0.08 TCGA-43-8118-01 12 88568414 88568414 G A TMTC3 Silent p.L410L 0.21 TCGA-43-8118-01 12 9242584 9242584 C G A2M Missense_Mutation p.E878Q 0.23 tolerated(1) benign(0.002) TCGA-43-8118-01 12 9334608 9334608 G T PZP Missense_Mutation p.S551Y 0.15 deleterious(0) probably_damaging(0.998) TCGA-43-8118-01 12 9334609 9334609 A T PZP Missense_Mutation p.S551T 0.15 tolerated(0.22) probably_damaging(0.992) TCGA-43-8118-01 12 95228341 95228341 T A MIR492 3'Flank 0.23 TCGA-43-8118-01 12 98987762 98987762 C G SLC25A3 Missense_Mutation p.F2L 0.10 tolerated_low_confidence(0.11) benign(0.001) TCGA-43-8118-01 13 103527656 103527656 G T ERCC5 Splice_Site p.X989_splice 0.18 TCGA-43-8118-01 13 110822004 110822004 T A COL4A1 Missense_Mutation p.K1283M 0.08 probably_damaging(0.999) TCGA-43-8118-01 13 113795234 113795234 C G F10 Missense_Mutation p.F124L 0.08 tolerated(0.73) benign(0.001) TCGA-43-8118-01 13 24890283 24890283 G T C1QTNF9 Missense_Mutation p.A48S 0.22 tolerated(0.72) benign(0.024) TCGA-43-8118-01 13 28542687 28542687 C A CDX2 Missense_Mutation p.A153S 0.23 tolerated(0.3) benign(0.167) TCGA-43-8118-01 13 28602376 28602376 C T FLT3 Missense_Mutation p.M664I 0.10 deleterious(0) probably_damaging(1) TCGA-43-8118-01 13 37625688 37625688 G A SUPT20H 5'UTR 0.09 TCGA-43-8118-01 13 46287967 46287967 G C SPERT Silent p.A269A 0.19 TCGA-43-8118-01 13 46563128 46563128 C A ZC3H13 Missense_Mutation p.R350L 0.10 unknown(0) TCGA-43-8118-01 13 47409111 47409111 A G HTR2A Missense_Mutation p.M426T 0.14 tolerated(0.14) benign(0) TCGA-43-8118-01 13 52952145 52952145 C T THSD1 Missense_Mutation p.A654T 0.07 deleterious(0) possibly_damaging(0.858) TCGA-43-8118-01 13 58298897 58298897 G T PCDH17 Missense_Mutation p.E983D 0.29 tolerated(1) benign(0.029) TCGA-43-8118-01 13 61987776 61987776 C A PCDH20 Silent p.L152L 0.28 TCGA-43-8118-01 13 64321187 64321187 G A AL445989.1 Missense_Mutation p.G85D 0.26 unknown(0) TCGA-43-8118-01 13 64321188 64321188 C A AL445989.1 Silent p.G85G 0.26 TCGA-43-8118-01 13 64321222 64321222 G T AL445989.1 Missense_Mutation p.G97C 0.14 unknown(0) TCGA-43-8118-01 13 79942976 79942976 G A RBM26 Missense_Mutation p.H262Y 0.07 deleterious(0) probably_damaging(0.991) TCGA-43-8118-01 14 103180915 103180915 G A RCOR1 Silent p.L338L 0.10 TCGA-43-8118-01 14 103592861 103592861 G A TNFAIP2 Missense_Mutation p.E23K 0.12 tolerated_low_confidence(0.16) benign(0.006) TCGA-43-8118-01 14 105415092 105415092 G C AHNAK2 Silent p.L2232L 0.08 TCGA-43-8118-01 14 106641995 106641995 C A IGHV1-18 Translation_Start_Site p.M1? 0.20 deleterious(0.01) benign(0.308) TCGA-43-8118-01 14 20296124 20296124 C A OR4N2 Missense_Mutation p.Q173K 0.24 tolerated(0.7) benign(0.005) TCGA-43-8118-01 14 20345276 20345276 C A OR4K2 Missense_Mutation p.P284T 0.18 deleterious(0) probably_damaging(1) TCGA-43-8118-01 14 20585979 20585979 G T OR4K17 Silent p.L138L 0.26 TCGA-43-8118-01 14 20585980 20585980 G T OR4K17 Missense_Mutation p.G139C 0.24 deleterious(0) probably_damaging(0.999) TCGA-43-8118-01 14 23884612 23884612 T G MYH7 Missense_Mutation p.K1754T 0.14 deleterious(0) probably_damaging(0.971) TCGA-43-8118-01 14 31617981 31617981 C A HECTD1 Missense_Mutation p.W814C 0.32 deleterious(0) probably_damaging(0.991) TCGA-43-8118-01 14 35550321 35550321 G C FAM177A1 Missense_Mutation p.D200H 0.07 deleterious(0.03) possibly_damaging(0.838) TCGA-43-8118-01 14 50558263 50558263 C A C14orf183 Missense_Mutation p.G102V 0.41 deleterious_low_confidence(0.02) probably_damaging(0.979) TCGA-43-8118-01 14 58604975 58604975 C A C14orf37 Missense_Mutation p.G368W 0.29 deleterious(0) benign(0.15) TCGA-43-8118-01 14 74206712 74206712 G A ELMSAN1 5'UTR 0.38 TCGA-43-8118-01 14 74516694 74516694 G C CCDC176 Missense_Mutation p.R361T 0.08 tolerated(0.29) benign(0.025) TCGA-43-8118-01 14 76642992 76642992 T A GPATCH2L Silent p.T337T 0.15 TCGA-43-8118-01 14 82000139 82000139 C T SEL1L 5'UTR 0.32 TCGA-43-8118-01 14 92344024 92344024 C A FBLN5 Missense_Mutation p.R331L 0.24 deleterious(0) benign(0.097) TCGA-43-8118-01 14 95110074 95110074 C A SERPINA13P Intron 0.29 TCGA-43-8118-01 14 96706743 96706743 C T BDKRB2 Silent p.A26A 0.37 TCGA-43-8118-01 15 100871177 100871177 T A ADAMTS17 Missense_Mutation p.H178L 0.14 deleterious(0) probably_damaging(0.998) TCGA-43-8118-01 15 20649621 20649621 C A HERC2P3 RNA 0.12 TCGA-43-8118-01 15 23326034 23326034 C A HERC2P2 RNA 0.24 TCGA-43-8118-01 15 25448378 25448378 C T SNORD115-18 RNA 0.12 TCGA-43-8118-01 15 25476068 25476068 C A SNORD115-33 3'Flank 0.24 TCGA-43-8118-01 15 25481275 25481275 G T SNORD115-36 RNA 0.12 TCGA-43-8118-01 15 28900520 28900520 G A HERC2P9 RNA 0.19 TCGA-43-8118-01 15 33999186 33999186 G A RYR3 Missense_Mutation p.D2184N 0.12 probably_damaging(1) TCGA-43-8118-01 15 34140619 34140619 C A RYR3 Missense_Mutation p.T4542K 0.23 probably_damaging(0.943) TCGA-43-8118-01 15 37390254 37390254 C A MEIS2 Silent p.A53A 0.24 TCGA-43-8118-01 15 41860509 41860509 A T TYRO3 Missense_Mutation p.E352D 0.13 tolerated(0.11) benign(0.008) TCGA-43-8118-01 15 43503613 43503613 C A EPB42 Splice_Site p.X213_splice 0.13 TCGA-43-8118-01 15 48551490 48551490 C A SLC12A1 Silent p.I712I 0.08 TCGA-43-8118-01 15 51041018 51041018 G C SPPL2A Missense_Mutation p.S76C 0.14 deleterious(0) probably_damaging(0.987) TCGA-43-8118-01 15 53081121 53081121 A C ONECUT1 Missense_Mutation p.C321G 0.19 deleterious(0.05) possibly_damaging(0.856) TCGA-43-8118-01 15 63619428 63619428 G A CA12 Silent p.I304I 0.12 TCGA-43-8118-01 15 65308812 65308812 C T MTFMT Missense_Mutation p.E259K 0.08 tolerated(0.16) possibly_damaging(0.643) TCGA-43-8118-01 15 73617775 73617775 A T HCN4 Missense_Mutation p.V534E 0.17 deleterious(0) unknown(0) TCGA-43-8118-01 15 74625104 74625104 C T CCDC33 Missense_Mutation p.A619V 0.24 tolerated(0.1) probably_damaging(0.971) TCGA-43-8118-01 15 75970080 75970080 A T CSPG4 Missense_Mutation p.C1700S 0.13 tolerated(0.13) possibly_damaging(0.597) TCGA-43-8118-01 15 77907576 77907576 G T LINGO1 Missense_Mutation p.L225I 0.20 deleterious(0.01) probably_damaging(0.991) TCGA-43-8118-01 15 81429068 81429068 G A C15orf26 Missense_Mutation p.R124K 0.15 deleterious(0.01) probably_damaging(0.928) TCGA-43-8118-01 15 81561880 81561880 G A IL16 Missense_Mutation p.G189E 0.26 deleterious(0.01) benign(0.393) TCGA-43-8118-01 15 81650554 81650554 G T TMC3 Missense_Mutation p.P227T 0.22 deleterious(0) probably_damaging(0.98) TCGA-43-8118-01 15 82444385 82444385 T A EFTUD1 Nonsense_Mutation p.K804* 0.13 TCGA-43-8118-01 15 82444386 82444386 G T EFTUD1 Missense_Mutation p.F803L 0.14 tolerated(0.56) benign(0.012) TCGA-43-8118-01 15 86286827 86286827 G C AKAP13 Missense_Mutation p.L2725F 0.06 tolerated(0.27) possibly_damaging(0.481) TCGA-43-8118-01 15 89872324 89872324 G T POLG Missense_Mutation p.F291L 0.14 deleterious(0) probably_damaging(0.998) TCGA-43-8118-01 15 90785102 90785102 G A GDPGP1 Missense_Mutation p.G321E 0.22 deleterious(0.03) possibly_damaging(0.895) TCGA-43-8118-01 16 11770086 11770086 G A SNN Silent p.K57K 0.07 TCGA-43-8118-01 16 1877797 1877797 G C FAHD1 Missense_Mutation p.L189F 0.15 tolerated(0.07) probably_damaging(0.998) TCGA-43-8118-01 16 19451843 19451843 G T TMC5 Silent p.P161P 0.12 TCGA-43-8118-01 16 19584492 19584492 G T C16orf62 Missense_Mutation p.D202Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-43-8118-01 16 20370596 20370596 C T PDILT 3'UTR 0.24 TCGA-43-8118-01 16 20634726 20634726 C G ACSM1 3'UTR 0.11 TCGA-43-8118-01 16 21663862 21663862 A G IGSF6 Missense_Mutation p.F20L 0.27 tolerated(0.35) benign(0.009) TCGA-43-8118-01 16 2203396 2203396 C G RAB26 Missense_Mutation p.R249G 0.16 deleterious(0.03) benign(0.162) TCGA-43-8118-01 16 23391970 23391970 C T SCNN1B Nonsense_Mutation p.Q591* 0.09 TCGA-43-8118-01 16 2821724 2821724 T C TCEB2 Intron 0.22 TCGA-43-8118-01 16 29821392 29821392 G A MAZ Intron 0.26 TCGA-43-8118-01 16 3065342 3065342 C G CLDN6 3'UTR 0.12 TCGA-43-8118-01 16 3433155 3433155 C T ZSCAN32 Silent p.R385R 0.22 TCGA-43-8118-01 16 3786661 3786661 T A CREBBP Missense_Mutation p.H1517L 0.16 unknown(0) TCGA-43-8118-01 16 4812682 4812682 G A ZNF500 Nonsense_Mutation p.Q164* 0.18 TCGA-43-8118-01 16 49672082 49672082 C A ZNF423 Missense_Mutation p.M327I 0.27 tolerated(0.83) benign(0.002) TCGA-43-8118-01 16 50112773 50112773 G C HEATR3 Missense_Mutation p.M295I 0.10 tolerated(0.05) benign(0.035) TCGA-43-8118-01 16 55361588 55361588 C A IRX6 Missense_Mutation p.H168Q 0.30 deleterious(0) probably_damaging(1) TCGA-43-8118-01 16 55361589 55361589 C A IRX6 Missense_Mutation p.R169S 0.32 deleterious(0) probably_damaging(0.981) TCGA-43-8118-01 16 57147338 57147338 G A CPNE2 Missense_Mutation p.E107K 0.10 tolerated(0.34) benign(0.39) TCGA-43-8118-01 16 67234428 67234428 C T ELMO3 Missense_Mutation p.T216I 0.23 tolerated(0.56) benign(0.044) TCGA-43-8118-01 16 67515065 67515065 C T ATP6V0D1 5'UTR 0.09 TCGA-43-8118-01 16 67915579 67915580 - C EDC4 Frame_Shift_Ins p.E948* 0.08 TCGA-43-8118-01 16 68056493 68056493 G A DDX28 Nonsense_Mutation p.R205* 0.13 TCGA-43-8118-01 16 70778356 70778356 G A VAC14 Missense_Mutation p.P500S 0.19 tolerated(0.45) benign(0.001) TCGA-43-8118-01 16 71779094 71779094 G A AP1G1 Missense_Mutation p.S654F 0.10 tolerated(0.05) possibly_damaging(0.458) TCGA-43-8118-01 16 72188301 72188301 T A PMFBP1 Missense_Mutation p.S75C 0.19 tolerated(0.28) possibly_damaging(0.698) TCGA-43-8118-01 16 76461384 76461384 G T CNTNAP4 Silent p.V117V 0.19 TCGA-43-8118-01 16 81209244 81209244 G C PKD1L2 Missense_Mutation p.A106G 0.30 tolerated(0.1) probably_damaging(0.958) TCGA-43-8118-01 16 85694948 85694948 G C GSE1 Missense_Mutation p.E613Q 0.11 deleterious(0.04) probably_damaging(0.968) TCGA-43-8118-01 16 90160894 90160894 G T TUBB8P7 RNA 0.13 TCGA-43-8118-01 17 10346796 10346796 C G MYH4 Missense_Mutation p.E1906Q 0.08 deleterious(0) probably_damaging(1) TCGA-43-8118-01 17 10432938 10432938 C A MYH2 Missense_Mutation p.E1020D 0.36 deleterious(0) probably_damaging(0.999) TCGA-43-8118-01 17 10443944 10443944 G A MYH2 Silent p.S325S 0.42 TCGA-43-8118-01 17 11593158 11593158 C - DNAH9 Frame_Shift_Del p.R1341Gfs*27 0.35 TCGA-43-8118-01 17 16843895 16843895 A G TNFRSF13B Intron 0.25 TCGA-43-8118-01 17 17910455 17910456 GC - LRRC48 Frame_Shift_Del p.L443Ffs*4 0.58 TCGA-43-8118-01 17 3336478 3336478 A G OR1E2 Missense_Mutation p.F220L 0.52 tolerated(0.27) benign(0.232) TCGA-43-8118-01 17 34328456 34328456 C G CCL15 Missense_Mutation p.D26H 0.35 tolerated(0.11) benign(0.059) TCGA-43-8118-01 17 37883547 37883547 G A ERBB2 Splice_Site p.X1054_splice 0.05 TCGA-43-8118-01 17 38857443 38857443 C G KRT24 Missense_Mutation p.Q268H 0.08 deleterious(0.01) probably_damaging(0.985) TCGA-43-8118-01 17 38938595 38938595 C A KRT27 Missense_Mutation p.G51C 0.55 deleterious(0.02) probably_damaging(0.966) TCGA-43-8118-01 17 40475064 40475064 C G STAT3 Missense_Mutation p.E616Q 0.16 deleterious(0.01) possibly_damaging(0.616) TCGA-43-8118-01 17 4449045 4449045 G A MYBBP1A Missense_Mutation p.P645S 0.42 deleterious(0.01) probably_damaging(0.959) TCGA-43-8118-01 17 48265912 48265912 C G COL1A1 Missense_Mutation p.K1062N 0.14 unknown(0) TCGA-43-8118-01 17 48266566 48266566 C G COL1A1 Missense_Mutation p.R967T 0.17 unknown(0) TCGA-43-8118-01 17 54431293 54431293 G A ANKFN1 Missense_Mutation p.D166N 0.08 tolerated(0.07) possibly_damaging(0.71) TCGA-43-8118-01 17 56345247 56345247 C G LPO Silent p.T677T 0.38 TCGA-43-8118-01 17 59482042 59482042 C A TBX2 Missense_Mutation p.D321E 0.40 tolerated(0.31) probably_damaging(0.958) TCGA-43-8118-01 17 61744355 61744355 A G MAP3K3 Missense_Mutation p.Q177R 0.37 tolerated(0.68) benign(0.038) TCGA-43-8118-01 17 65052373 65052373 G T CACNG1 Nonsense_Mutation p.E219* 0.40 TCGA-43-8118-01 17 67119547 67119547 A T ABCA6 Nonsense_Mutation p.Y423* 0.14 TCGA-43-8118-01 17 72367865 72367865 C A GPR142 Intron 0.50 TCGA-43-8118-01 17 7578554 7578554 A G TP53 Missense_Mutation p.Y126H 0.39 deleterious(0) probably_damaging(1) TCGA-43-8118-01 18 11999050 11999050 C G IMPA2 Intron 0.10 TCGA-43-8118-01 18 13095593 13095593 G C CEP192 Missense_Mutation p.A2116P 0.35 deleterious(0.02) probably_damaging(0.943) TCGA-43-8118-01 18 20606196 20606196 A C RBBP8 Missense_Mutation p.K896T 0.10 deleterious(0) probably_damaging(0.92) TCGA-43-8118-01 18 31318898 31318898 A C ASXL3 Missense_Mutation p.E510D 0.25 benign(0.006) TCGA-43-8118-01 18 32446117 32446117 A C DTNA Intron 0.36 TCGA-43-8118-01 18 33606938 33606938 C T RPRD1A Silent p.K238K 0.11 TCGA-43-8118-01 18 43217128 43217128 C A SLC14A2 Missense_Mutation p.T275K 0.26 deleterious(0.02) benign(0.065) TCGA-43-8118-01 18 43440199 43440199 C A EPG5 Silent p.R2293R 0.14 TCGA-43-8118-01 18 55020041 55020041 G C ST8SIA3 5'UTR 0.09 TCGA-43-8118-01 18 56202612 56202612 G A ALPK2 Missense_Mutation p.P1603S 0.12 tolerated(1) benign(0.001) TCGA-43-8118-01 18 61262419 61262419 G A SERPINB13 Splice_Site p.X257_splice 0.21 TCGA-43-8118-01 18 64172144 64172144 C A CDH19 Missense_Mutation p.D742Y 0.17 deleterious(0.01) probably_damaging(0.961) TCGA-43-8118-01 18 7011309 7011309 T C LAMA1 Missense_Mutation p.Q1226R 0.24 tolerated(0.22) benign(0.14) TCGA-43-8118-01 18 74154360 74154360 G A ZNF516 Silent p.S217S 0.21 TCGA-43-8118-01 18 8114809 8114809 C G PTPRM Silent p.V717V 0.09 TCGA-43-8118-01 18 8825567 8825567 C T SOGA2 Silent p.G1353G 0.14 TCGA-43-8118-01 19 10397760 10397760 G T ICAM4 Silent p.L24L 0.26 TCGA-43-8118-01 19 14694243 14694243 C A CLEC17A Missense_Mutation p.P40T 0.38 deleterious_low_confidence(0.03) benign(0.017) TCGA-43-8118-01 19 15132512 15132512 G T CCDC105 Missense_Mutation p.G376C 0.35 deleterious(0) possibly_damaging(0.73) TCGA-43-8118-01 19 15198223 15198223 C A OR1I1 Missense_Mutation p.A116E 0.54 deleterious(0) probably_damaging(0.999) TCGA-43-8118-01 19 16222610 16222610 G T RAB8A 5'UTR 0.42 TCGA-43-8118-01 19 16687800 16687800 C G MED26 Missense_Mutation p.E281Q 0.08 tolerated(0.11) benign(0.143) TCGA-43-8118-01 19 18548519 18548519 G T ISYNA1 Silent p.R58R 0.36 TCGA-43-8118-01 19 19626269 19626269 C A TSSK6 5'UTR 0.43 TCGA-43-8118-01 19 19656722 19656722 C A CILP2 Missense_Mutation p.A1123E 0.44 deleterious(0.03) benign(0.011) TCGA-43-8118-01 19 34263137 34263137 C A CHST8 Missense_Mutation p.S148R 0.25 tolerated(0.54) benign(0.001) TCGA-43-8118-01 19 34263138 34263138 C A CHST8 Missense_Mutation p.L149M 0.24 tolerated(0.05) probably_damaging(0.921) TCGA-43-8118-01 19 36211928 36211928 C T KMT2B Missense_Mutation p.S560L 0.14 possibly_damaging(0.879) TCGA-43-8118-01 19 36212309 36212309 C G KMT2B Missense_Mutation p.S687C 0.11 possibly_damaging(0.79) TCGA-43-8118-01 19 36276155 36276155 G C ARHGAP33 Missense_Mutation p.A596P 0.14 tolerated_low_confidence(0.11) possibly_damaging(0.82) TCGA-43-8118-01 19 36340455 36340455 G C NPHS1 Missense_Mutation p.L237V 0.09 deleterious(0.04) benign(0.027) TCGA-43-8118-01 19 38230542 38230542 A G ZNF573 Silent p.F283F 0.34 TCGA-43-8118-01 19 39575875 39575875 G C PAPL 5'UTR 0.10 TCGA-43-8118-01 19 39916074 39916074 A T PLEKHG2 3'UTR 0.21 TCGA-43-8118-01 19 39916099 39916099 G T PLEKHG2 3'UTR 0.36 TCGA-43-8118-01 19 41075566 41075566 G T SPTBN4 Missense_Mutation p.K2320N 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.775) TCGA-43-8118-01 19 44301828 44301828 C A LYPD5 Missense_Mutation p.S224I 0.14 tolerated(0.07) benign(0.024) TCGA-43-8118-01 19 44680677 44680677 G T ZNF226 Missense_Mutation p.C421F 0.08 deleterious(0) probably_damaging(1) TCGA-43-8118-01 19 46288894 46288894 G C AC011530.4 Missense_Mutation p.C26W 0.19 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-43-8118-01 19 47200461 47200461 T C PRKD2 Missense_Mutation p.K424E 0.08 deleterious(0) benign(0.338) TCGA-43-8118-01 19 47845034 47845034 C G C5AR2 Silent p.S326S 0.21 TCGA-43-8118-01 19 49261431 49261431 G T FGF21 Missense_Mutation p.S195I 0.15 deleterious(0) possibly_damaging(0.884) TCGA-43-8118-01 19 51171794 51171794 C A SHANK1 Silent p.P1141P 0.21 TCGA-43-8118-01 19 51273865 51273865 G T GPR32 Missense_Mutation p.G3V 0.26 tolerated_low_confidence(0.05) benign(0.357) TCGA-43-8118-01 19 51527569 51527569 G A KLK11 Intron 0.11 TCGA-43-8118-01 19 51742826 51742826 A T CD33 Silent p.S326S 0.14 TCGA-43-8118-01 19 52938353 52938353 G A ZNF534 Silent p.L67L 0.06 TCGA-43-8118-01 19 54313443 54313443 G T NLRP12 Missense_Mutation p.D490E 0.21 deleterious(0.04) benign(0.104) TCGA-43-8118-01 19 54445514 54445514 G A CACNG7 Silent p.P265P 0.14 TCGA-43-8118-01 19 54818795 54818795 C A LILRA5 Missense_Mutation p.R268L 0.28 deleterious(0.03) benign(0.021) TCGA-43-8118-01 19 55316358 55316358 T A KIR2DL4 Missense_Mutation p.Y63N 0.26 deleterious(0.03) possibly_damaging(0.786) TCGA-43-8118-01 19 55444945 55444945 C A NLRP7 Missense_Mutation p.Q878H 0.31 deleterious(0) probably_damaging(0.997) TCGA-43-8118-01 19 6418713 6418713 C A KHSRP Missense_Mutation p.Q260H 0.40 deleterious(0) probably_damaging(0.997) TCGA-43-8118-01 19 6924826 6924826 G A EMR1 Silent p.V643V 0.42 TCGA-43-8118-01 1 101704900 101704900 G T S1PR1 Silent p.R120R 0.13 TCGA-43-8118-01 1 103463918 103463918 C A COL11A1 Missense_Mutation p.G715V 0.21 unknown(0) TCGA-43-8118-01 1 10713566 10713566 C G CASZ1 Missense_Mutation p.V850L 0.11 tolerated_low_confidence(0.16) benign(0.059) TCGA-43-8118-01 1 10720400 10720400 C T CASZ1 Silent p.R233R 0.20 TCGA-43-8118-01 1 109241358 109241358 C G PRPF38B Missense_Mutation p.Q231E 0.13 tolerated(0.24) benign(0.089) TCGA-43-8118-01 1 110737452 110737452 C A SLC6A17 Intron 0.27 TCGA-43-8118-01 1 11119932 11119932 C A SRM Missense_Mutation p.E23D 0.37 deleterious(0) probably_damaging(0.995) TCGA-43-8118-01 1 111860623 111860623 C A CHIA Silent p.I207I 0.32 TCGA-43-8118-01 1 113471741 113471741 T C SLC16A1 Missense_Mutation p.I64V 0.29 tolerated(0.09) benign(0.414) TCGA-43-8118-01 1 117303046 117303046 C G CD2 Missense_Mutation p.I135M 0.09 tolerated(0.08) possibly_damaging(0.707) TCGA-43-8118-01 1 117559930 117559930 A T CD101 Missense_Mutation p.N483Y 0.07 deleterious(0.05) benign(0.396) TCGA-43-8118-01 1 12820727 12820727 A T C1orf158 Missense_Mutation p.Y143F 0.20 tolerated(0.36) benign(0.004) TCGA-43-8118-01 1 144868065 144868065 C A PDE4DIP Missense_Mutation p.G1792C 0.11 deleterious(0.03) possibly_damaging(0.823) TCGA-43-8118-01 1 147410860 147410860 C T GPR89B Silent p.S45S 0.14 TCGA-43-8118-01 1 151507528 151507528 C A CGN Nonsense_Mutation p.S972* 0.09 TCGA-43-8118-01 1 152187511 152187511 G A HRNR Silent p.H2198H 0.03 TCGA-43-8118-01 1 152328889 152328889 G T FLG2 Missense_Mutation p.S458Y 0.27 unknown(0) TCGA-43-8118-01 1 153276409 153276409 C A PGLYRP3 Silent p.S151S 0.24 TCGA-43-8118-01 1 155317525 155317525 C G ASH1L Missense_Mutation p.E2575D 0.09 tolerated_low_confidence(0.55) benign(0.267) TCGA-43-8118-01 1 155317599 155317599 C T ASH1L Missense_Mutation p.E2551K 0.08 tolerated_low_confidence(0.05) probably_damaging(0.99) TCGA-43-8118-01 1 156213494 156213494 C T PAQR6 3'UTR 0.12 TCGA-43-8118-01 1 156910146 156910146 C A ARHGEF11 Missense_Mutation p.A1196S 0.24 tolerated_low_confidence(0.72) benign(0.018) TCGA-43-8118-01 1 157801727 157801727 G T CD5L 3'UTR 0.32 TCGA-43-8118-01 1 158618444 158618444 C A SPTA1 Splice_Site p.X1190_splice 0.10 TCGA-43-8118-01 1 158815765 158815765 T A MNDA Missense_Mutation p.M320K 0.21 deleterious(0.01) benign(0.038) TCGA-43-8118-01 1 160465848 160465848 T A SLAMF6 Intron 0.26 TCGA-43-8118-01 1 160616744 160616744 G C SLAMF1 5'UTR 0.41 TCGA-43-8118-01 1 161087906 161087906 C G NIT1 5'UTR 0.19 TCGA-43-8118-01 1 167794075 167794075 C A ADCY10 Missense_Mutation p.D1257Y 0.25 deleterious(0) probably_damaging(0.91) TCGA-43-8118-01 1 167825573 167825573 G A ADCY10 Silent p.F667F 0.16 TCGA-43-8118-01 1 169438047 169438047 T C SLC19A2 Missense_Mutation p.Y353C 0.25 tolerated(0.11) benign(0.031) TCGA-43-8118-01 1 172559045 172559045 A T SUCO Missense_Mutation p.Y935F 0.10 deleterious(0) probably_damaging(0.997) TCGA-43-8118-01 1 17312722 17312722 C T ATP13A2 Silent p.L1179L 0.27 TCGA-43-8118-01 1 175355280 175355280 G A TNR Silent p.P555P 0.25 TCGA-43-8118-01 1 176993806 176993806 C A ASTN1 Missense_Mutation p.V395L 0.15 deleterious(0) probably_damaging(0.991) TCGA-43-8118-01 1 179851956 179851956 C A TOR1AIP1 Silent p.R107R 0.10 TCGA-43-8118-01 1 183212292 183212292 C T LAMC2 Silent p.L1113L 0.15 TCGA-43-8118-01 1 1847121 1847121 C A CALML6 Intron 0.15 TCGA-43-8118-01 1 190195440 190195440 C G BRINP3 Missense_Mutation p.V245L 0.29 tolerated(0.47) benign(0) TCGA-43-8118-01 1 190234086 190234086 G T BRINP3 Missense_Mutation p.T176K 0.23 deleterious(0.04) benign(0.134) TCGA-43-8118-01 1 192992058 192992058 T A UCHL5 Nonsense_Mutation p.K282* 0.16 TCGA-43-8118-01 1 193181550 193181550 C T CDC73 Missense_Mutation p.A366V 0.22 deleterious(0.01) probably_damaging(0.986) TCGA-43-8118-01 1 197411476 197411476 G A CRB1 Intron 0.15 TCGA-43-8118-01 1 198685948 198685948 C A PTPRC Missense_Mutation p.H477N 0.16 tolerated(0.84) benign(0) TCGA-43-8118-01 1 203317233 203317233 C A FMOD Missense_Mutation p.G56W 0.23 deleterious(0.02) benign(0.219) TCGA-43-8118-01 1 207072745 207072745 T A IL24 Missense_Mutation p.L43H 0.33 deleterious(0) probably_damaging(0.989) TCGA-43-8118-01 1 207314523 207314523 A T C4BPA Missense_Mutation p.E449V 0.14 tolerated(0.08) benign(0.078) TCGA-43-8118-01 1 208227802 208227802 C A PLXNA2 Missense_Mutation p.E940D 0.11 tolerated(0.73) probably_damaging(0.982) TCGA-43-8118-01 1 209964081 209964081 C A IRF6 Missense_Mutation p.Q273H 0.40 deleterious(0) probably_damaging(0.999) TCGA-43-8118-01 1 211526657 211526657 G T TRAF5 Missense_Mutation p.D26Y 0.12 deleterious(0.01) probably_damaging(0.994) TCGA-43-8118-01 1 212148531 212148531 G A INTS7 Missense_Mutation p.H598Y 0.10 tolerated(1) benign(0.015) TCGA-43-8118-01 1 216061847 216061847 A T USH2A Missense_Mutation p.V2715E 0.26 benign(0.004) TCGA-43-8118-01 1 2160915 2160915 A G SKI Missense_Mutation p.Y237C 0.11 deleterious(0) probably_damaging(1) TCGA-43-8118-01 1 216219807 216219807 G T USH2A Silent p.I2097I 0.25 TCGA-43-8118-01 1 22021562 22021562 A C USP48 Missense_Mutation p.I960M 0.09 deleterious(0.01) probably_damaging(0.926) TCGA-43-8118-01 1 226567632 226567632 T C PARP1 Missense_Mutation p.K512E 0.14 tolerated(0.49) benign(0.005) TCGA-43-8118-01 1 232942402 232942402 G T MAP10 Missense_Mutation p.V545F 0.08 deleterious(0) possibly_damaging(0.901) TCGA-43-8118-01 1 233511794 233511794 G T MLK4 Missense_Mutation p.R603I 0.09 deleterious(0.04) probably_damaging(0.99) TCGA-43-8118-01 1 237016254 237016254 A T MTR Missense_Mutation p.M607L 0.18 tolerated(0.32) benign(0.017) TCGA-43-8118-01 1 238090158 238090158 A C RP11-193H5.1 RNA 0.33 TCGA-43-8118-01 1 244217806 244217806 G T ZBTB18 Missense_Mutation p.D244Y 0.12 deleterious(0) probably_damaging(0.998) TCGA-43-8118-01 1 247902703 247902703 G T OR14K1 Missense_Mutation p.D263Y 0.15 deleterious(0.02) possibly_damaging(0.826) TCGA-43-8118-01 1 248028042 248028042 G C TRIM58 Missense_Mutation p.L184F 0.09 tolerated(0.71) benign(0.043) TCGA-43-8118-01 1 248059305 248059305 G T OR2W3 Missense_Mutation p.R139S 0.10 tolerated(0.06) benign(0.038) TCGA-43-8118-01 1 248085160 248085160 C A OR2T8 Missense_Mutation p.P281T 0.11 deleterious(0) probably_damaging(1) TCGA-43-8118-01 1 248085161 248085161 C A OR2T8 Missense_Mutation p.P281H 0.11 deleterious(0) probably_damaging(1) TCGA-43-8118-01 1 249142079 249142079 C A ZNF672 Silent p.G202G 0.17 TCGA-43-8118-01 1 36026543 36026543 G T NCDN Missense_Mutation p.G264V 0.18 tolerated(0.17) benign(0.104) TCGA-43-8118-01 1 42045416 42045416 T G HIVEP3 Missense_Mutation p.M1685L 0.23 possibly_damaging(0.904) TCGA-43-8118-01 1 43220610 43220610 C T LEPRE1 Missense_Mutation p.M425I 0.08 deleterious(0.04) possibly_damaging(0.79) TCGA-43-8118-01 1 51774930 51774930 C A TTC39A Intron 0.13 TCGA-43-8118-01 1 54605624 54605624 G C CDCP2 Missense_Mutation p.P307A 0.41 tolerated(0.12) possibly_damaging(0.626) TCGA-43-8118-01 1 6008219 6008219 C A NPHP4 Silent p.P301P 0.18 TCGA-43-8118-01 1 6169954 6169954 C A CHD5 Missense_Mutation p.A1827S 0.12 tolerated(0.09) possibly_damaging(0.579) TCGA-43-8118-01 1 6681711 6681711 A T PHF13 3'UTR 0.23 TCGA-43-8118-01 1 70034249 70034249 C A LRRC7 5'UTR 0.33 TCGA-43-8118-01 1 77672403 77672403 C A PIGK Missense_Mutation p.R54L 0.10 deleterious(0) probably_damaging(0.999) TCGA-43-8118-01 1 78001646 78001646 G C AK5 Missense_Mutation p.A515P 0.06 tolerated(0.14) benign(0.163) TCGA-43-8118-01 1 82431740 82431740 A T LPHN2 Splice_Site p.X656_splice 0.09 TCGA-43-8118-01 1 91403193 91403193 C T ZNF644 Silent p.R1179R 0.12 TCGA-43-8118-01 1 92789535 92789535 G T RPAP2 Missense_Mutation p.S353I 0.26 tolerated(0.11) benign(0.136) TCGA-43-8118-01 20 10280035 10280035 G A SNAP25 Missense_Mutation p.R176H 0.11 deleterious(0.03) possibly_damaging(0.836) TCGA-43-8118-01 20 1115688 1115688 G C PSMF1 Intron 0.22 TCGA-43-8118-01 20 1514958 1514958 A T SIRPD 3'UTR 0.31 TCGA-43-8118-01 20 18365068 18365068 C T DZANK1 Missense_Mutation p.R745K 0.29 tolerated(0.5) benign(0.002) TCGA-43-8118-01 20 1961448 1961448 C G PDYN Missense_Mutation p.A96P 0.20 deleterious(0.02) possibly_damaging(0.83) TCGA-43-8118-01 20 32162068 32162068 G T CBFA2T2 Splice_Site p.X21_splice 0.25 TCGA-43-8118-01 20 36848171 36848171 C T KIAA1755 Splice_Site p.X806_splice 0.11 TCGA-43-8118-01 20 3687261 3687261 C G SIGLEC1 Missense_Mutation p.D48H 0.31 deleterious(0.03) possibly_damaging(0.512) TCGA-43-8118-01 20 44641109 44641109 G T MMP9 Silent p.A406A 0.25 TCGA-43-8118-01 20 50408852 50408854 CTC - SALL4 In_Frame_Del p.S57del 0.29 TCGA-43-8118-01 20 57768913 57768913 C G ZNF831 Missense_Mutation p.Q947E 0.10 deleterious(0.02) possibly_damaging(0.527) TCGA-43-8118-01 20 61511899 61511899 C T DIDO1 Silent p.Q1803Q 0.16 TCGA-43-8118-01 21 22804443 22804443 C G NCAM2 Missense_Mutation p.P499R 0.16 deleterious(0) probably_damaging(0.999) TCGA-43-8118-01 21 27423428 27423428 A G APP Missense_Mutation p.F184L 0.18 deleterious(0) unknown(0) TCGA-43-8118-01 21 31720771 31720771 G T KRTAP23-1 Missense_Mutation p.L52I 0.11 unknown(0) TCGA-43-8118-01 21 44492122 44492122 G C CBS Missense_Mutation p.S61C 0.15 deleterious(0.01) benign(0.004) TCGA-43-8118-01 21 45795817 45795817 C G TRPM2 Silent p.T291T 0.24 TCGA-43-8118-01 21 45877231 45877231 G A LRRC3 Missense_Mutation p.R235K 0.33 tolerated(0.18) benign(0.053) TCGA-43-8118-01 22 17073152 17073152 G T CCT8L2 Missense_Mutation p.Q97K 0.20 deleterious(0.01) possibly_damaging(0.871) TCGA-43-8118-01 22 17073153 17073153 G T CCT8L2 Silent p.T96T 0.19 TCGA-43-8118-01 22 19175135 19175135 G A CLTCL1 Silent p.L1514L 0.08 TCGA-43-8118-01 22 19241689 19241689 C A CLTCL1 Missense_Mutation p.M104I 0.23 deleterious(0.03) benign(0.076) TCGA-43-8118-01 22 20800889 20800889 C T KLHL22 Silent p.L460L 0.09 TCGA-43-8118-01 22 22385671 22385671 G A IGLV4-69 Missense_Mutation p.A54T 0.32 tolerated(0.39) benign(0.009) TCGA-43-8118-01 22 23252767 23252767 G T IGLJ4 Silent p.L8L 0.05 TCGA-43-8118-01 22 23626206 23626206 G T BCR Nonsense_Mutation p.E720* 0.14 TCGA-43-8118-01 22 29755845 29755845 T A AP1B1 Missense_Mutation p.M83L 0.28 tolerated(1) benign(0.005) TCGA-43-8118-01 22 31722888 31722888 C G PATZ1 Missense_Mutation p.E685Q 0.06 tolerated_low_confidence(0.18) probably_damaging(0.985) TCGA-43-8118-01 22 32753874 32753874 T A RFPL3 5'UTR 0.32 TCGA-43-8118-01 22 35481725 35481725 T C ISX 3'UTR 0.32 TCGA-43-8118-01 22 37318298 37318298 T A CSF2RB Missense_Mutation p.W17R 0.29 tolerated(0.15) benign(0.086) TCGA-43-8118-01 22 37627277 37627277 C T RAC2 Missense_Mutation p.E148K 0.04 tolerated_low_confidence(0.12) benign(0.342) TCGA-43-8118-01 22 37678537 37678537 C A CYTH4 5'UTR 0.18 TCGA-43-8118-01 22 38374007 38374007 C T SOX10 Silent p.A188A 0.31 TCGA-43-8118-01 22 39636860 39636860 G T PDGFB Intron 0.11 TCGA-43-8118-01 22 41077471 41077471 C A MCHR1 Missense_Mutation p.P270T 0.31 deleterious(0) probably_damaging(0.924) TCGA-43-8118-01 2 118766149 118766149 C T CCDC93 Missense_Mutation p.R43K 0.12 deleterious(0) probably_damaging(0.971) TCGA-43-8118-01 2 122513252 122513252 G T TSN 5'UTR 0.14 TCGA-43-8118-01 2 125175073 125175073 C A CNTNAP5 Missense_Mutation p.H145Q 0.23 tolerated(0.66) possibly_damaging(0.452) TCGA-43-8118-01 2 128339577 128339577 T - MYO7B Frame_Shift_Del p.F398Lfs*107 0.11 TCGA-43-8118-01 2 130910947 130910947 G A SMPD4 Missense_Mutation p.P696L 0.18 deleterious(0.01) benign(0.234) TCGA-43-8118-01 2 131356353 131356353 C A CFC1 Nonsense_Mutation p.E37* 0.14 TCGA-43-8118-01 2 132258616 132258616 G T AC093838.4 RNA 0.13 TCGA-43-8118-01 2 136564899 136564899 C A LCT Missense_Mutation p.W1324C 0.09 deleterious(0) probably_damaging(1) TCGA-43-8118-01 2 136564900 136564900 C A LCT Missense_Mutation p.W1324L 0.09 deleterious(0) probably_damaging(0.997) TCGA-43-8118-01 2 139308559 139308559 G A SPOPL Missense_Mutation p.S96N 0.38 tolerated(0.09) benign(0.006) TCGA-43-8118-01 2 141055405 141055405 C A LRP1B Silent p.P4313P 0.24 TCGA-43-8118-01 2 141264400 141264400 T A LRP1B Missense_Mutation p.D2829V 0.25 probably_damaging(0.942) TCGA-43-8118-01 2 152127288 152127288 T G NMI Missense_Mutation p.Q281H 0.21 deleterious(0) probably_damaging(1) TCGA-43-8118-01 2 158443804 158443804 G T ACVR1C Missense_Mutation p.P67T 0.12 tolerated(0.28) possibly_damaging(0.589) TCGA-43-8118-01 2 162813677 162813677 G T SLC4A10 Missense_Mutation p.R907L 0.22 deleterious(0.01) benign(0.136) TCGA-43-8118-01 2 162865134 162865134 G C DPP4 Missense_Mutation p.S642W 0.27 deleterious(0) probably_damaging(0.967) TCGA-43-8118-01 2 163280002 163280002 G C KCNH7 Missense_Mutation p.I666M 0.12 deleterious(0) probably_damaging(0.996) TCGA-43-8118-01 2 178936768 178936768 C T PDE11A Missense_Mutation p.V133M 0.12 tolerated(0.18) possibly_damaging(0.868) TCGA-43-8118-01 2 179395339 179395339 G A TTN Missense_Mutation p.H35335Y 0.13 TCGA-43-8118-01 2 179410816 179410816 G T TTN Missense_Mutation p.T31716N 0.14 TCGA-43-8118-01 2 179424766 179424766 C T TTN Nonsense_Mutation p.W28698* 0.22 TCGA-43-8118-01 2 179431735 179431735 G T TTN Missense_Mutation p.S26375Y 0.14 TCGA-43-8118-01 2 179566264 179566264 G T TTN Missense_Mutation p.P10197T 0.06 TCGA-43-8118-01 2 179665242 179665242 C G TTN Missense_Mutation p.E155Q 0.12 TCGA-43-8118-01 2 185463723 185463723 C A ZNF804A Missense_Mutation p.L13I 0.18 deleterious(0) possibly_damaging(0.636) TCGA-43-8118-01 2 189929293 189929293 G A COL5A2 Missense_Mutation p.P569L 0.31 possibly_damaging(0.592) TCGA-43-8118-01 2 190554328 190554328 A T ANKAR Missense_Mutation p.D226V 0.34 deleterious(0) benign(0.13) TCGA-43-8118-01 2 190617431 190617431 G A OSGEPL1 Missense_Mutation p.R372C 0.12 deleterious(0.04) benign(0.014) TCGA-43-8118-01 2 191301381 191301381 C G MFSD6 Nonsense_Mutation p.S209* 0.18 TCGA-43-8118-01 2 196729385 196729385 G T DNAH7 Missense_Mutation p.Q2332K 0.13 deleterious(0) probably_damaging(0.996) TCGA-43-8118-01 2 196737021 196737021 C G DNAH7 Missense_Mutation p.E2196Q 0.13 tolerated(0.15) probably_damaging(0.965) TCGA-43-8118-01 2 197757947 197757947 T A PGAP1 Missense_Mutation p.K317I 0.20 deleterious(0) possibly_damaging(0.899) TCGA-43-8118-01 2 200298145 200298145 G C SATB2 Missense_Mutation p.R88G 0.25 deleterious(0) probably_damaging(0.926) TCGA-43-8118-01 2 201371641 201371641 G A KCTD18 Silent p.F33F 0.33 TCGA-43-8118-01 2 203846936 203846936 G C CARF Missense_Mutation p.G611R 0.14 deleterious_low_confidence(0.03) possibly_damaging(0.662) TCGA-43-8118-01 2 207003256 207003256 G A NDUFS1 Missense_Mutation p.P463S 0.25 tolerated(0.12) benign(0.014) TCGA-43-8118-01 2 207175155 207175155 C A ZDBF2 Missense_Mutation p.P1968Q 0.37 deleterious(0) possibly_damaging(0.804) TCGA-43-8118-01 2 207175953 207175953 T C ZDBF2 Missense_Mutation p.L2234S 0.53 deleterious(0) possibly_damaging(0.587) TCGA-43-8118-01 2 209045501 209045501 C A C2orf80 Missense_Mutation p.A112S 0.22 tolerated(0.19) possibly_damaging(0.547) TCGA-43-8118-01 2 211469853 211469853 G T CPS1 Missense_Mutation p.V628L 0.19 tolerated(0.11) benign(0.409) TCGA-43-8118-01 2 212812339 212812339 A T ERBB4 Silent p.S79S 0.14 TCGA-43-8118-01 2 217142530 217142530 C G MARCH4 Missense_Mutation p.G244R 0.25 deleterious(0) probably_damaging(0.926) TCGA-43-8118-01 2 220379455 220379455 C A ASIC4 Silent p.I130I 0.36 TCGA-43-8118-01 2 228881963 228881963 C G SPHKAP Missense_Mutation p.E1203Q 0.14 deleterious(0.01) probably_damaging(0.95) TCGA-43-8118-01 2 238436151 238436151 G A MLPH Missense_Mutation p.E338K 0.15 tolerated(0.12) benign(0.049) TCGA-43-8118-01 2 240968912 240968912 T A OR6B2 Missense_Mutation p.H312L 0.28 deleterious(0.04) benign(0.001) TCGA-43-8118-01 2 24516570 24516570 G A ITSN2 Silent p.F570F 0.08 TCGA-43-8118-01 2 26706485 26706485 C T OTOF Missense_Mutation p.E413K 0.06 deleterious(0) possibly_damaging(0.857) TCGA-43-8118-01 2 27801333 27801333 G A C2orf16 Missense_Mutation p.V632M 0.23 deleterious(0.02) benign(0.032) TCGA-43-8118-01 2 29404818 29404818 G T CLIP4 3'UTR 0.21 TCGA-43-8118-01 2 29404819 29404819 G T CLIP4 3'UTR 0.21 TCGA-43-8118-01 2 33585790 33585790 C G LTBP1 Nonsense_Mutation p.S1376* 0.04 TCGA-43-8118-01 2 44981239 44981239 G C CAMKMT Missense_Mutation p.K248N 0.13 tolerated(0.17) possibly_damaging(0.736) TCGA-43-8118-01 2 61725823 61725823 G A XPO1 Silent p.S248S 0.16 TCGA-43-8118-01 2 73826552 73826552 G A ALMS1 Missense_Mutation p.D3857N 0.15 probably_damaging(1) TCGA-43-8118-01 2 79314701 79314701 G A REG1B Missense_Mutation p.S13F 0.12 deleterious(0.04) benign(0) TCGA-43-8118-01 2 80816524 80816524 G T CTNNA2 Silent p.V701V 0.34 TCGA-43-8118-01 2 80816525 80816525 G T CTNNA2 Missense_Mutation p.A702S 0.37 tolerated(0.33) benign(0.009) TCGA-43-8118-01 2 89156797 89156797 G A IGKC 3'UTR 0.32 TCGA-43-8118-01 2 89196845 89196845 T C IGKV5-2 Missense_Mutation p.L12P 0.29 deleterious(0) possibly_damaging(0.497) TCGA-43-8118-01 2 89266039 89266039 G T IGKV1-6 Silent p.S31S 0.24 TCGA-43-8118-01 2 89326713 89326713 A T IGKV3-11 Silent p.P100P 0.08 TCGA-43-8118-01 2 90078300 90078300 G - IGKV3D-20 Frame_Shift_Del p.G113Vfs*? 0.17 TCGA-43-8118-01 2 90249360 90249360 G A IGKV1D-43 Missense_Mutation p.A106T 0.04 deleterious(0.02) possibly_damaging(0.752) TCGA-43-8118-01 2 90249395 90249395 T G IGKV1D-43 Silent p.P117P 0.13 TCGA-43-8118-01 2 95847676 95847689 AGCCATATGAATGC - ZNF2 Frame_Shift_Del p.P369Rfs*7 0.14 TCGA-43-8118-01 2 99995528 99995528 G T EIF5B Missense_Mutation p.R630I 0.31 probably_damaging(0.997) TCGA-43-8118-01 3 101085600 101085602 TCT - SENP7 In_Frame_Del p.E330del 0.08 TCGA-43-8118-01 3 107492210 107492210 A T BBX Nonsense_Mutation p.K548* 0.67 TCGA-43-8118-01 3 108224645 108224645 C G MYH15 Missense_Mutation p.E60D 0.07 deleterious(0.04) benign(0.039) TCGA-43-8118-01 3 108373025 108373025 G A DZIP3 Silent p.R689R 0.07 TCGA-43-8118-01 3 108778667 108778667 A T MORC1 Silent p.L339L 0.37 TCGA-43-8118-01 3 113619972 113619972 C T GRAMD1C Missense_Mutation p.S212L 0.12 tolerated(0.07) benign(0.012) TCGA-43-8118-01 3 121217419 121217419 T C POLQ Silent p.L686L 0.22 TCGA-43-8118-01 3 122287714 122287715 AG - DTX3L Frame_Shift_Del p.R260Ifs*6 0.14 TCGA-43-8118-01 3 126062578 126062578 C T KLF15 Missense_Mutation p.V415M 0.06 tolerated(0.09) benign(0.003) TCGA-43-8118-01 3 126224837 126224837 G T UROC1 Missense_Mutation p.A207E 0.15 deleterious(0) probably_damaging(0.996) TCGA-43-8118-01 3 127823737 127823737 T A RUVBL1 Missense_Mutation p.Y131F 0.09 tolerated(0.11) benign(0.068) TCGA-43-8118-01 3 130285675 130285675 A G COL6A6 Missense_Mutation p.H471R 0.46 deleterious(0.02) benign(0.243) TCGA-43-8118-01 3 132948132 132948132 G T TMEM108 5'UTR 0.10 TCGA-43-8118-01 3 133099850 133099850 G T TMEM108 Missense_Mutation p.R432L 0.12 deleterious(0) possibly_damaging(0.725) TCGA-43-8118-01 3 136287700 136287700 C T STAG1 Missense_Mutation p.V101M 0.09 deleterious(0.03) possibly_damaging(0.588) TCGA-43-8118-01 3 140281046 140281046 G T CLSTN2 Missense_Mutation p.G703V 0.06 deleterious(0) probably_damaging(0.96) TCGA-43-8118-01 3 142241671 142241671 C T ATR Missense_Mutation p.D1389N 0.05 deleterious(0.01) probably_damaging(1) TCGA-43-8118-01 3 142443490 142443490 A T TRPC1 Missense_Mutation p.E30V 0.44 tolerated(0.17) benign(0.007) TCGA-43-8118-01 3 148459542 148459542 G T AGTR1 Missense_Mutation p.K240N 0.21 deleterious(0.04) benign(0.075) TCGA-43-8118-01 3 150916481 150916481 G T GPR171 Silent p.G231G 0.32 TCGA-43-8118-01 3 151097971 151097971 A G MED12L Missense_Mutation p.R1482G 0.13 deleterious(0) probably_damaging(0.957) TCGA-43-8118-01 3 165548041 165548041 C T BCHE Missense_Mutation p.V261I 0.18 tolerated(0.16) benign(0.004) TCGA-43-8118-01 3 167023466 167023466 T C ZBBX Missense_Mutation p.S564G 0.43 deleterious(0.02) benign(0.069) TCGA-43-8118-01 3 168834006 168834006 C A MECOM Missense_Mutation p.G429W 0.14 deleterious(0.01) benign(0.029) TCGA-43-8118-01 3 169513211 169513211 T A LRRC34 Intron 0.12 TCGA-43-8118-01 3 170244708 170244708 G C SLC7A14 Silent p.T6T 0.07 TCGA-43-8118-01 3 172694761 172694761 C G SPATA16 Missense_Mutation p.W310C 0.31 deleterious(0) possibly_damaging(0.878) TCGA-43-8118-01 3 179316513 179316513 C A MRPL47 Nonsense_Mutation p.E118* 0.50 TCGA-43-8118-01 3 186954123 186954123 G T MASP1 Silent p.S512S 0.18 TCGA-43-8118-01 3 193031966 193031966 C T ATP13A5 Silent p.T725T 0.08 TCGA-43-8118-01 3 193156353 193156353 C A ATP13A4 Silent p.V861V 0.47 TCGA-43-8118-01 3 194167803 194167803 G C ATP13A3 Missense_Mutation p.I450M 0.06 deleterious(0) probably_damaging(0.973) TCGA-43-8118-01 3 196812548 196812548 G T DLG1 Missense_Mutation p.H614N 0.07 deleterious(0) benign(0.35) TCGA-43-8118-01 3 197640758 197640758 C G IQCG Missense_Mutation p.E294D 0.06 deleterious(0) possibly_damaging(0.841) TCGA-43-8118-01 3 197640778 197640778 C G IQCG Missense_Mutation p.E288Q 0.06 deleterious(0) probably_damaging(0.996) TCGA-43-8118-01 3 407788 407788 G A CHL1 Missense_Mutation p.E581K 0.30 tolerated(0.06) benign(0.272) TCGA-43-8118-01 3 47555131 47555131 G C ELP6 5'UTR 0.12 TCGA-43-8118-01 3 48679800 48679800 G C CELSR3 Missense_Mutation p.R2886G 0.08 deleterious(0) probably_damaging(0.998) TCGA-43-8118-01 3 49365218 49365218 T C USP4 Silent p.L87L 0.26 TCGA-43-8118-01 3 49701883 49701883 G A BSN Missense_Mutation p.G3879E 0.15 probably_damaging(0.994) TCGA-43-8118-01 3 50331065 50331065 C T HYAL3 Missense_Mutation p.E328K 0.17 tolerated(1) benign(0.015) TCGA-43-8118-01 3 50374741 50374741 C T RASSF1 Intron 0.10 TCGA-43-8118-01 3 58631305 58631305 T C FAM3D Missense_Mutation p.Y65C 0.33 deleterious(0.01) possibly_damaging(0.525) TCGA-43-8118-01 3 64526841 64526841 C T ADAMTS9 Silent p.K1817K 0.19 TCGA-43-8118-01 3 96962950 96962950 C G EPHA6 Missense_Mutation p.D475E 0.11 tolerated(0.31) benign(0.104) TCGA-43-8118-01 3 97887778 97887778 C A OR5H15 Missense_Mutation p.P79T 0.21 deleterious(0) probably_damaging(0.957) TCGA-43-8118-01 3 98109856 98109856 C A OR5K3 Missense_Mutation p.A116E 0.07 deleterious(0) probably_damaging(0.966) TCGA-43-8118-01 4 107845175 107845175 C A DKK2 Missense_Mutation p.C239F 0.12 deleterious(0) probably_damaging(0.986) TCGA-43-8118-01 4 108955426 108955426 A G HADH Silent p.L303L 0.40 TCGA-43-8118-01 4 113568220 113568220 A C LARP7 Silent p.R202R 0.13 TCGA-43-8118-01 4 114204026 114204026 A G ANK2 Missense_Mutation p.K693E 0.19 probably_damaging(0.996) TCGA-43-8118-01 4 119727036 119727036 G A SEC24D Missense_Mutation p.P292L 0.32 deleterious(0.01) probably_damaging(1) TCGA-43-8118-01 4 123122210 123122210 C T KIAA1109 Missense_Mutation p.T476I 0.13 benign(0.083) TCGA-43-8118-01 4 13462428 13462428 T C RAB28 Missense_Mutation p.T96A 0.11 deleterious(0) possibly_damaging(0.804) TCGA-43-8118-01 4 146560287 146560287 C T MMAA 5'UTR 0.20 TCGA-43-8118-01 4 148545976 148545976 G - TMEM184C Frame_Shift_Del p.G105Efs*17 0.27 TCGA-43-8118-01 4 151408973 151408973 G A LRBA Silent p.F2165F 0.11 TCGA-43-8118-01 4 151814250 151814250 G T LRBA Missense_Mutation p.H707N 0.22 tolerated(0.08) probably_damaging(0.989) TCGA-43-8118-01 4 16597387 16597387 A T LDB2 Missense_Mutation p.I116N 0.16 deleterious(0) probably_damaging(0.987) TCGA-43-8118-01 4 170037612 170037612 G C SH3RF1 Missense_Mutation p.I649M 0.13 tolerated(0.46) benign(0.002) TCGA-43-8118-01 4 170037640 170037640 G C SH3RF1 Nonsense_Mutation p.S640* 0.15 TCGA-43-8118-01 4 188924737 188924737 A G ZFP42 Missense_Mutation p.D259G 0.30 deleterious(0.01) possibly_damaging(0.488) TCGA-43-8118-01 4 22422419 22422419 C T GPR125 Intron 0.22 TCGA-43-8118-01 4 24538798 24538798 T A DHX15 Splice_Site p.X596_splice 0.12 TCGA-43-8118-01 4 39436075 39436075 A T KLB Missense_Mutation p.E357D 0.12 tolerated(0.21) benign(0.012) TCGA-43-8118-01 4 46314709 46314709 G C GABRA2 Missense_Mutation p.R94G 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-43-8118-01 4 54256750 54256750 G T FIP1L1 Nonsense_Mutation p.E154* 0.20 TCGA-43-8118-01 4 57173761 57173761 A T KIAA1211 Nonsense_Mutation p.K61* 0.13 TCGA-43-8118-01 4 57173763 57173763 G T KIAA1211 Missense_Mutation p.K61N 0.13 deleterious(0.02) probably_damaging(0.981) TCGA-43-8118-01 4 57244336 57244336 C A AASDH Missense_Mutation p.V216L 0.14 tolerated(0.38) benign(0.052) TCGA-43-8118-01 4 6107573 6107573 A C JAKMIP1 Missense_Mutation p.L84R 0.09 deleterious(0) probably_damaging(0.942) TCGA-43-8118-01 4 62758482 62758482 G C LPHN3 Missense_Mutation p.R462T 0.11 tolerated(0.46) benign(0.035) TCGA-43-8118-01 4 66467438 66467438 G C EPHA5 Missense_Mutation p.S277R 0.14 deleterious(0.05) probably_damaging(0.986) TCGA-43-8118-01 4 68449324 68449324 C A STAP1 Missense_Mutation p.T188N 0.12 tolerated(0.08) possibly_damaging(0.88) TCGA-43-8118-01 4 68687906 68687906 G T TMPRSS11D 3'UTR 0.23 TCGA-43-8118-01 4 68788571 68788571 C T TMPRSS11A Nonsense_Mutation p.W201* 0.07 TCGA-43-8118-01 4 70823229 70823229 G T CSN2 Silent p.L146L 0.19 TCGA-43-8118-01 4 71472158 71472158 G T AMBN Missense_Mutation p.G352V 0.21 deleterious(0.01) probably_damaging(1) TCGA-43-8118-01 4 74274401 74274401 G C ALB Missense_Mutation p.E121Q 0.15 deleterious(0.01) possibly_damaging(0.609) TCGA-43-8118-01 4 79399146 79399146 G T FRAS1 Nonsense_Mutation p.E2677* 0.25 TCGA-43-8118-01 4 85414499 85414499 G A NKX6-1 Silent p.S349S 0.27 TCGA-43-8118-01 4 96470013 96470013 G A UNC5C 5'UTR 0.08 TCGA-43-8118-01 5 101592840 101592840 C A SLCO4C1 Missense_Mutation p.G483V 0.30 deleterious(0) probably_damaging(1) TCGA-43-8118-01 5 102355520 102355520 G T PAM Missense_Mutation p.A820S 0.21 tolerated(0.07) probably_damaging(0.99) TCGA-43-8118-01 5 10433817 10433817 G T MARCH6 3'UTR 0.17 TCGA-43-8118-01 5 120022323 120022323 C T PRR16 Silent p.I255I 0.10 TCGA-43-8118-01 5 13871765 13871765 A T DNAH5 Missense_Mutation p.F1169Y 0.09 benign(0.153) TCGA-43-8118-01 5 140181898 140181898 C T PCDHA3 Silent p.I372I 0.14 TCGA-43-8118-01 5 140516980 140516980 C A PCDHB5 Missense_Mutation p.A655D 0.33 deleterious_low_confidence(0) benign(0.134) TCGA-43-8118-01 5 140712134 140712134 C A PCDHGA1 Missense_Mutation p.T628K 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-43-8118-01 5 140725483 140725483 C A PCDHGA3 Missense_Mutation p.T628K 0.20 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-43-8118-01 5 141304974 141304974 G C KIAA0141 Splice_Site p.X49_splice 0.10 TCGA-43-8118-01 5 145246259 145246259 G T GRXCR2 Silent p.I123I 0.39 TCGA-43-8118-01 5 150036602 150036602 C T SYNPO 3'Flank 0.21 TCGA-43-8118-01 5 150425500 150425500 C A TNIP1 Silent p.T286T 0.34 TCGA-43-8118-01 5 150924646 150924654 CATATGAAA - FAT2 In_Frame_Del p.F2012_M2014del 0.28 TCGA-43-8118-01 5 154191115 154191115 A T LARP1 Missense_Mutation p.Y922F 0.19 deleterious(0) probably_damaging(0.997) TCGA-43-8118-01 5 156929988 156929988 C T ADAM19 Silent p.G377G 0.24 TCGA-43-8118-01 5 168151456 168151456 G T SLIT3 Silent p.P768P 0.26 TCGA-43-8118-01 5 168151457 168151457 G T SLIT3 Missense_Mutation p.P768H 0.26 deleterious(0.04) probably_damaging(1) TCGA-43-8118-01 5 171318489 171318489 T C FBXW11 Silent p.L257L 0.31 TCGA-43-8118-01 5 175540858 175540858 T A FAM153B Missense_Mutation p.V276E 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.887) TCGA-43-8118-01 5 179563557 179563557 G T RASGEF1C Intron 0.55 TCGA-43-8118-01 5 21752092 21752092 T A CDH12 Silent p.I713I 0.14 TCGA-43-8118-01 5 225641 225641 C G SDHA Missense_Mutation p.H140Q 0.07 tolerated_low_confidence(0.16) possibly_damaging(0.851) TCGA-43-8118-01 5 23522991 23522991 G T PRDM9 Missense_Mutation p.W293C 0.24 deleterious(0) possibly_damaging(0.769) TCGA-43-8118-01 5 24488071 24488071 T A CDH10 Missense_Mutation p.I690F 0.18 deleterious(0) probably_damaging(0.954) TCGA-43-8118-01 5 24537748 24537748 G T CDH10 Silent p.L89L 0.23 TCGA-43-8118-01 5 34043072 34043072 C T C1QTNF3 Silent p.R53R 0.11 TCGA-43-8118-01 5 35697836 35697836 G C SPEF2 Silent p.L694L 0.10 TCGA-43-8118-01 5 36136520 36136520 T C LMBRD2 Missense_Mutation p.Y213C 0.23 tolerated(0.31) benign(0.006) TCGA-43-8118-01 5 37044765 37044765 G T NIPBL Nonsense_Mutation p.G2093* 0.21 TCGA-43-8118-01 5 6632777 6632777 C A NSUN2 Missense_Mutation p.W63C 0.22 deleterious(0) probably_damaging(0.927) TCGA-43-8118-01 5 7883310 7883310 C G MTRR Missense_Mutation p.Q302E 0.10 tolerated(0.92) benign(0.026) TCGA-43-8118-01 5 90059161 90059161 T A GPR98 Missense_Mutation p.S4054T 0.26 possibly_damaging(0.787) TCGA-43-8118-01 6 100838700 100838700 G - SIM1 Frame_Shift_Del p.P613Hfs*29 0.11 TCGA-43-8118-01 6 107361110 107361110 A C C6orf203 Missense_Mutation p.K54T 0.25 deleterious(0.04) possibly_damaging(0.598) TCGA-43-8118-01 6 112041033 112041033 C T FYN Silent p.G74G 0.08 TCGA-43-8118-01 6 128388791 128388791 C T PTPRK Missense_Mutation p.G677E 0.05 tolerated(0.19) benign(0.004) TCGA-43-8118-01 6 151670468 151670468 G T AKAP12 Missense_Mutation p.R314S 0.17 deleterious(0) possibly_damaging(0.799) TCGA-43-8118-01 6 152675953 152675953 A C SYNE1 Silent p.T3589T 0.13 TCGA-43-8118-01 6 152831414 152831414 G T SYNE1 Missense_Mutation p.S165R 0.13 probably_damaging(0.953) TCGA-43-8118-01 6 161574578 161574578 C G AGPAT4 Intron 0.16 TCGA-43-8118-01 6 25845672 25845672 G A SLC17A3 Missense_Mutation p.L479F 0.29 deleterious(0.02) benign(0.172) TCGA-43-8118-01 6 27220653 27220653 A C PRSS16 Silent p.R359R 0.28 TCGA-43-8118-01 6 28056441 28056441 A G ZNF165 Silent p.S217S 0.10 TCGA-43-8118-01 6 30955378 30955378 G T MUC21 Missense_Mutation p.V476L 0.28 tolerated(0.09) benign(0.283) TCGA-43-8118-01 6 31609099 31609099 G A BAG6 Missense_Mutation p.T857I 0.19 deleterious(0) probably_damaging(0.986) TCGA-43-8118-01 6 39835317 39835317 T C DAAM2 Silent p.L154L 0.32 TCGA-43-8118-01 6 39855342 39855342 C A DAAM2 Silent p.A678A 0.36 TCGA-43-8118-01 6 41652622 41652622 G C TFEB Silent p.P382P 0.31 TCGA-43-8118-01 6 43325171 43325171 G C ZNF318 Nonsense_Mutation p.S294* 0.30 TCGA-43-8118-01 6 46107413 46107413 A T ENPP4 Silent p.V31V 0.13 TCGA-43-8118-01 6 49754117 49754117 C T PGK2 Missense_Mutation p.G262R 0.33 deleterious(0.02) probably_damaging(0.989) TCGA-43-8118-01 6 6145933 6145933 C T F13A1 Silent p.L706L 0.16 TCGA-43-8118-01 6 70992695 70992695 A T COL9A1 Intron 0.25 TCGA-43-8118-01 6 7230094 7230094 G T RREB1 Missense_Mutation p.G588C 0.50 deleterious(0.01) probably_damaging(0.919) TCGA-43-8118-01 6 76022254 76022254 T A FILIP1 Silent p.T1098T 0.29 TCGA-43-8118-01 6 76022932 76022932 C A FILIP1 Missense_Mutation p.W872C 0.36 tolerated(0.05) benign(0.267) TCGA-43-8118-01 6 88763711 88763711 G A SPACA1 Missense_Mutation p.V86I 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.808) TCGA-43-8118-01 6 99848798 99848798 T A PNISR Missense_Mutation p.K679M 0.64 deleterious_low_confidence(0) possibly_damaging(0.891) TCGA-43-8118-01 7 100852178 100852178 C A PLOD3 Missense_Mutation p.A582S 0.26 deleterious(0) benign(0.017) TCGA-43-8118-01 7 102940737 102940737 C G PMPCB Missense_Mutation p.S147C 0.10 deleterious(0) possibly_damaging(0.749) TCGA-43-8118-01 7 104752384 104752384 A T KMT2E Missense_Mutation p.H1394L 0.11 tolerated_low_confidence(0.34) benign(0.227) TCGA-43-8118-01 7 104783635 104783635 G T SRPK2 Nonsense_Mutation p.S319* 0.09 TCGA-43-8118-01 7 116556113 116556113 G C CAPZA2 Splice_Site p.X220_splice 0.14 TCGA-43-8118-01 7 127253516 127253516 C A PAX4 Missense_Mutation p.E203D 0.23 tolerated(0.08) benign(0.081) TCGA-43-8118-01 7 128489445 128489445 A T FLNC Missense_Mutation p.K1671M 0.23 deleterious(0.02) probably_damaging(1) TCGA-43-8118-01 7 129064931 129064931 G T AHCYL2 Missense_Mutation p.A553S 0.22 tolerated(0.12) possibly_damaging(0.543) TCGA-43-8118-01 7 129764317 129764317 G T KLHDC10 Missense_Mutation p.G269V 0.09 deleterious(0) probably_damaging(0.945) TCGA-43-8118-01 7 129945689 129945689 G A CPA4 Missense_Mutation p.V174I 0.09 tolerated(1) benign(0) TCGA-43-8118-01 7 143098450 143098450 C A EPHA1 Silent p.V133V 0.29 TCGA-43-8118-01 7 143632884 143632884 C G OR2F2 Missense_Mutation p.L187V 0.09 deleterious(0.05) possibly_damaging(0.558) TCGA-43-8118-01 7 148975510 148975510 C A ZNF783 Missense_Mutation p.H232N 0.23 tolerated(0.33) benign(0.031) TCGA-43-8118-01 7 149492320 149492320 G T SSPO RNA 0.13 TCGA-43-8118-01 7 149514735 149514735 G A SSPO RNA 0.10 TCGA-43-8118-01 7 1518418 1518418 C A INTS1 Missense_Mutation p.R1478L 0.11 tolerated(0.29) benign(0.001) TCGA-43-8118-01 7 19765283 19765283 G T TMEM196 Missense_Mutation p.L105I 0.20 tolerated(0.2) possibly_damaging(0.567) TCGA-43-8118-01 7 2853989 2853989 C A GNA12 Intron 0.30 TCGA-43-8118-01 7 35284578 35284578 G T TBX20 Missense_Mutation p.L213M 0.21 tolerated(0.42) benign(0.173) TCGA-43-8118-01 7 42958867 42958867 C A PSMA2 Intron 0.17 TCGA-43-8118-01 7 42972080 42972080 C T MRPL32 Missense_Mutation p.P32L 0.07 tolerated(0.69) benign(0) TCGA-43-8118-01 7 44153518 44153518 C A AEBP1 Silent p.G1045G 0.20 TCGA-43-8118-01 7 48018103 48018103 G A HUS1 Nonsense_Mutation p.R90* 0.19 TCGA-43-8118-01 7 48520720 48520720 G T ABCA13 Nonsense_Mutation p.E4355* 0.46 TCGA-43-8118-01 7 49842304 49842304 C G VWC2 Intron 0.21 TCGA-43-8118-01 7 56006692 56006692 G A ZNF713 Missense_Mutation p.E96K 0.10 tolerated(0.19) benign(0.004) TCGA-43-8118-01 7 70881000 70881000 G T WBSCR17 Missense_Mutation p.G239W 0.25 deleterious(0) probably_damaging(0.998) TCGA-43-8118-01 7 77365823 77365823 A G RSBN1L Missense_Mutation p.E228G 0.17 deleterious(0.04) possibly_damaging(0.828) TCGA-43-8118-01 7 82996952 82996952 G T SEMA3E Missense_Mutation p.R760S 0.18 deleterious(0.04) benign(0.274) TCGA-43-8118-01 7 87180053 87180053 C A ABCB1 Missense_Mutation p.K367N 0.16 tolerated(0.56) benign(0.002) TCGA-43-8118-01 7 92730668 92730668 T A SAMD9 Silent p.P1581P 0.25 TCGA-43-8118-01 7 92970851 92970851 A G CCDC132 Missense_Mutation p.Y724C 0.16 tolerated(0.14) probably_damaging(0.979) TCGA-43-8118-01 7 93055842 93055842 C A CALCR Missense_Mutation p.W451C 0.12 tolerated(0.07) probably_damaging(0.927) TCGA-43-8118-01 7 96650267 96650267 C T DLX5 Silent p.S217S 0.10 TCGA-43-8118-01 7 99705134 99705134 G A TAF6 Missense_Mutation p.T627I 0.27 deleterious_low_confidence(0.04) benign(0.035) TCGA-43-8118-01 8 103305854 103305854 G A UBR5 Missense_Mutation p.P1523L 0.23 tolerated(0.08) benign(0.244) TCGA-43-8118-01 8 104898020 104898020 C G RIMS2 Nonsense_Mutation p.S398* 0.13 TCGA-43-8118-01 8 104948899 104948899 C A RIMS2 Silent p.T832T 0.22 TCGA-43-8118-01 8 104948900 104948900 C A RIMS2 Missense_Mutation p.L833I 0.22 deleterious_low_confidence(0) possibly_damaging(0.842) TCGA-43-8118-01 8 105393412 105393412 C T DPYS Intron 0.19 TCGA-43-8118-01 8 108264084 108264084 C T ANGPT1 Silent p.%3D 0.09 TCGA-43-8118-01 8 113599392 113599392 T A CSMD3 Missense_Mutation p.N1263I 0.09 deleterious(0.02) probably_damaging(0.962) TCGA-43-8118-01 8 113599403 113599403 G A CSMD3 Silent p.L1259L 0.09 TCGA-43-8118-01 8 113697782 113697782 C A CSMD3 Missense_Mutation p.D779Y 0.21 deleterious(0) probably_damaging(1) TCGA-43-8118-01 8 11421515 11421515 C A BLK Nonsense_Mutation p.C472* 0.26 TCGA-43-8118-01 8 121706117 121706117 C T SNTB1 Silent p.V201V 0.06 TCGA-43-8118-01 8 124360507 124360507 T C ATAD2 Missense_Mutation p.K605E 0.27 deleterious(0.04) benign(0.025) TCGA-43-8118-01 8 133851712 133851712 G C PHF20L1 Missense_Mutation p.E758Q 0.11 deleterious(0.01) benign(0.06) TCGA-43-8118-01 8 135614408 135614408 C G ZFAT Silent p.L518L 0.23 TCGA-43-8118-01 8 136659346 136659346 T C KHDRBS3 3'UTR 0.24 TCGA-43-8118-01 8 145651584 145651584 C T VPS28 Silent p.G15G 0.11 TCGA-43-8118-01 8 145661253 145661253 C G TONSL Missense_Mutation p.D855H 0.09 tolerated(0.09) benign(0.007) TCGA-43-8118-01 8 35583781 35583781 C A UNC5D Missense_Mutation p.S472Y 0.24 tolerated(0.05) benign(0.012) TCGA-43-8118-01 8 37693141 37693141 C A GPR124 Missense_Mutation p.P635T 0.24 tolerated(0.08) benign(0.272) TCGA-43-8118-01 8 39840222 39840222 G T IDO2 Missense_Mutation p.G136W 0.16 deleterious(0) probably_damaging(1) TCGA-43-8118-01 8 59359948 59359948 G T UBXN2B Missense_Mutation p.R278S 0.17 deleterious(0.04) probably_damaging(0.999) TCGA-43-8118-01 8 76471158 76471158 C G HNF4G Missense_Mutation p.L327V 0.12 deleterious(0) probably_damaging(0.957) TCGA-43-8118-01 8 77767902 77767902 C A ZFHX4 Silent p.S2915S 0.21 TCGA-43-8118-01 8 8175765 8175765 C A SGK223 Nonsense_Mutation p.E1374* 0.32 TCGA-43-8118-01 8 87076360 87076360 A G PSKH2 Missense_Mutation p.I229T 0.10 deleterious(0.01) possibly_damaging(0.864) TCGA-43-8118-01 8 88885060 88885060 C A DCAF4L2 Silent p.G380G 0.17 TCGA-43-8118-01 8 88885435 88885435 A G DCAF4L2 Silent p.C255C 0.25 TCGA-43-8118-01 8 92301437 92301437 T G SLC26A7 Missense_Mutation p.I89M 0.21 deleterious(0) probably_damaging(0.994) TCGA-43-8118-01 8 98290055 98290055 C A TSPYL5 Silent p.R6R 0.17 TCGA-43-8118-01 8 99146860 99146860 G T POP1 Missense_Mutation p.W328C 0.22 deleterious(0) probably_damaging(1) TCGA-43-8118-01 9 103348378 103348378 G T MURC Missense_Mutation p.R247M 0.46 deleterious(0) probably_damaging(0.998) TCGA-43-8118-01 9 104375738 104375738 A T GRIN3A Missense_Mutation p.S896T 0.29 deleterious(0.02) probably_damaging(0.992) TCGA-43-8118-01 9 106885431 106885431 G T SMC2 Missense_Mutation p.E725D 0.40 deleterious(0.01) benign(0.329) TCGA-43-8118-01 9 111692199 111692199 C T IKBKAP Silent p.V51V 0.16 TCGA-43-8118-01 9 113149574 113149574 G T SVEP1 Missense_Mutation p.L3351I 0.35 benign(0.084) TCGA-43-8118-01 9 113169476 113169476 C T SVEP1 Missense_Mutation p.D2802N 0.30 benign(0.032) TCGA-43-8118-01 9 113231327 113231327 C A SVEP1 Missense_Mutation p.C1018F 0.39 probably_damaging(1) TCGA-43-8118-01 9 114131353 114131353 C A KIAA0368 Missense_Mutation p.S1870I 0.13 tolerated(0.18) benign(0.017) TCGA-43-8118-01 9 125746958 125746958 A G RABGAP1 Silent p.Q115Q 0.39 TCGA-43-8118-01 9 136262344 136262344 C G C9orf96 Missense_Mutation p.S307C 0.09 deleterious(0.01) possibly_damaging(0.76) TCGA-43-8118-01 9 139391498 139391498 G A NOTCH1 Silent p.L2231L 0.15 TCGA-43-8118-01 9 139848170 139848170 A T LCN12 Silent p.T90T 0.57 TCGA-43-8118-01 9 140137546 140137546 G A TUBB4B Silent p.Q292Q 0.10 TCGA-43-8118-01 9 35399223 35399223 G T UNC13B Missense_Mutation p.R1298L 0.15 deleterious(0) possibly_damaging(0.64) TCGA-43-8118-01 9 6014571 6014571 G A RANBP6 Missense_Mutation p.A346V 0.16 tolerated(1) benign(0.034) TCGA-43-8118-01 9 75431124 75431124 C A TMC1 Silent p.I587I 0.33 TCGA-43-8118-01 X 100075408 100075408 G T CSTF2 Translation_Start_Site p.M1? 0.14 deleterious_low_confidence(0) benign(0.38) TCGA-43-8118-01 X 100075409 100075409 G T CSTF2 Missense_Mutation p.A2S 0.12 tolerated_low_confidence(0.72) probably_damaging(0.935) TCGA-43-8118-01 X 100078360 100078360 C A CSTF2 Missense_Mutation p.S129R 0.11 deleterious(0) probably_damaging(0.996) TCGA-43-8118-01 X 100292054 100292054 G T TRMT2B Silent p.I149I 0.09 TCGA-43-8118-01 X 101138493 101138493 G T ZMAT1 Missense_Mutation p.L636I 0.13 deleterious(0) probably_damaging(0.997) TCGA-43-8118-01 X 102331169 102331169 C A NXF3 Intron 0.05 TCGA-43-8118-01 X 102885167 102885167 G T TCEAL1 Missense_Mutation p.R108L 0.15 deleterious(0.03) benign(0.001) TCGA-43-8118-01 X 104993033 104993033 T A IL1RAPL2 Missense_Mutation p.C377S 0.30 deleterious(0.01) probably_damaging(0.971) TCGA-43-8118-01 X 107084333 107084333 G T MID2 Silent p.P146P 0.13 TCGA-43-8118-01 X 107431761 107431761 G T COL4A6 Missense_Mutation p.P526T 0.12 probably_damaging(0.966) TCGA-43-8118-01 X 107938631 107938631 C T COL4A5 Silent p.S1652S 0.08 TCGA-43-8118-01 X 109694967 109694967 A T RGAG1 Silent p.P374P 0.12 TCGA-43-8118-01 X 111914469 111914469 G T LHFPL1 Nonsense_Mutation p.C50* 0.09 TCGA-43-8118-01 X 112034007 112034007 G A AMOT Nonsense_Mutation p.Q644* 0.17 TCGA-43-8118-01 X 118145841 118145841 G A LONRF3 Silent p.L572L 0.13 TCGA-43-8118-01 X 118602536 118602536 G A SLC25A5 Missense_Mutation p.A20T 0.14 deleterious(0.04) probably_damaging(0.964) TCGA-43-8118-01 X 118603931 118603931 G A SLC25A5 Missense_Mutation p.R140H 0.12 tolerated(0.09) benign(0.279) TCGA-43-8118-01 X 119005893 119005893 C A NDUFA1 Missense_Mutation p.P7T 0.11 deleterious(0) probably_damaging(0.991) TCGA-43-8118-01 X 119387464 119387464 G T ZBTB33 Missense_Mutation p.G65V 0.12 deleterious(0) probably_damaging(1) TCGA-43-8118-01 X 120183004 120183004 C A GLUD2 Missense_Mutation p.P489H 0.12 deleterious(0.01) probably_damaging(0.976) TCGA-43-8118-01 X 123556242 123556242 T C TENM1 Missense_Mutation p.T1451A 0.10 deleterious(0) possibly_damaging(0.5) TCGA-43-8118-01 X 125298907 125298907 G A DCAF12L2 Missense_Mutation p.P334L 0.11 tolerated(0.58) benign(0.003) TCGA-43-8118-01 X 125685356 125685356 G T DCAF12L1 Missense_Mutation p.N412K 0.10 tolerated(0.09) benign(0.033) TCGA-43-8118-01 X 129189893 129189893 C G BCORL1 Missense_Mutation p.Q1640E 0.13 probably_damaging(0.945) TCGA-43-8118-01 X 133607399 133607399 A G HPRT1 Missense_Mutation p.D13G 0.08 deleterious(0.02) benign(0.101) TCGA-43-8118-01 X 134681185 134681185 G T DDX26B Missense_Mutation p.G246V 0.11 deleterious(0.04) probably_damaging(0.963) TCGA-43-8118-01 X 134990633 134990633 T C SAGE1 Intron 0.09 TCGA-43-8118-01 X 135429276 135429276 C A GPR112 Silent p.T1137T 0.11 TCGA-43-8118-01 X 138711967 138711967 C A MCF2 Missense_Mutation p.A169S 0.19 deleterious(0) possibly_damaging(0.651) TCGA-43-8118-01 X 139038339 139038339 G T CXorf66 Missense_Mutation p.P268T 0.21 tolerated(0.36) benign(0.002) TCGA-43-8118-01 X 139040227 139040227 C T CXorf66 Missense_Mutation p.G80R 0.12 tolerated(0.44) benign(0.113) TCGA-43-8118-01 X 139866546 139866546 C A CDR1 5'UTR 0.09 TCGA-43-8118-01 X 140994576 140994576 C T MAGEC1 Silent p.S462S 0.04 TCGA-43-8118-01 X 149638235 149638235 G A MAMLD1 Silent p.L105L 0.32 TCGA-43-8118-01 X 151283897 151283897 A C RP11-1007I13.4 RNA 0.12 TCGA-43-8118-01 X 152815572 152815572 G T ATP2B3 Missense_Mutation p.V551F 0.11 deleterious(0) possibly_damaging(0.852) TCGA-43-8118-01 X 152960022 152960022 G T SLC6A8 Missense_Mutation p.M510I 0.14 deleterious(0) possibly_damaging(0.856) TCGA-43-8118-01 X 153001907 153001907 G T ABCD1 Missense_Mutation p.A445S 0.10 tolerated(1) benign(0.001) TCGA-43-8118-01 X 153037688 153037688 G T PLXNB3 Silent p.R930R 0.08 TCGA-43-8118-01 X 153043755 153043755 C A PLXNB3 Missense_Mutation p.P1840T 0.13 deleterious(0) probably_damaging(0.997) TCGA-43-8118-01 X 153221814 153221814 G T HCFC1 Missense_Mutation p.A895D 0.06 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-43-8118-01 X 153589802 153589802 G T FLNA Missense_Mutation p.D1027E 0.14 tolerated(0.59) benign(0.017) TCGA-43-8118-01 X 153716949 153716949 C T SLC10A3 Missense_Mutation p.D111N 0.13 deleterious(0.04) possibly_damaging(0.701) TCGA-43-8118-01 X 153881669 153881669 C T CTAG2 Missense_Mutation p.G41S 0.24 deleterious_low_confidence(0) unknown(0) TCGA-43-8118-01 X 154225318 154225318 T A F8 Silent p.T106T 0.27 TCGA-43-8118-01 X 18597971 18597971 A G CDKL5 Missense_Mutation p.M96V 0.13 tolerated_low_confidence(0.18) benign(0.027) TCGA-43-8118-01 X 21675857 21675857 G A KLHL34 Missense_Mutation p.T17I 0.41 deleterious(0) possibly_damaging(0.84) TCGA-43-8118-01 X 22237169 22237169 G T PHEX Missense_Mutation p.A573S 0.28 deleterious(0.03) possibly_damaging(0.61) TCGA-43-8118-01 X 34148585 34148585 G A FAM47A Missense_Mutation p.T604I 0.15 tolerated(0.34) probably_damaging(0.986) TCGA-43-8118-01 X 47040977 47040977 G C RBM10 Missense_Mutation p.A503P 0.35 tolerated(0.16) benign(0.446) TCGA-43-8118-01 X 54559016 54559016 A G GNL3L Missense_Mutation p.H6R 0.15 tolerated_low_confidence(0.07) benign(0.001) TCGA-43-8118-01 X 54776418 54776418 C T ITIH6 Silent p.R1284R 0.18 TCGA-43-8118-01 X 54781515 54781515 T A ITIH6 Missense_Mutation p.E1046V 0.35 tolerated(0.06) possibly_damaging(0.521) TCGA-43-8118-01 X 57620365 57620365 G T ZXDB Silent p.V628V 0.11 TCGA-43-8118-01 X 64717096 64717096 T A ZC3H12B Silent p.T231T 0.20 TCGA-43-8118-01 X 65415068 65415068 G C HEPH Missense_Mutation p.D554H 0.28 deleterious(0.03) probably_damaging(0.989) TCGA-43-8118-01 X 66931314 66931314 C A AR Silent p.P652P 0.14 TCGA-43-8118-01 X 67283909 67283909 C A OPHN1 Missense_Mutation p.G649W 0.12 deleterious(0.04) benign(0.003) TCGA-43-8118-01 X 67937101 67937101 G A STARD8 Nonsense_Mutation p.W115* 0.33 TCGA-43-8118-01 X 68381267 68381267 C G PJA1 Silent p.G605G 0.11 TCGA-43-8118-01 X 69479350 69479350 T C P2RY4 Missense_Mutation p.Y42C 0.39 deleterious(0) probably_damaging(0.999) TCGA-43-8118-01 X 70384107 70384107 G T NLGN3 Missense_Mutation p.R281L 0.22 tolerated(0.08) probably_damaging(1) TCGA-43-8118-01 X 75651115 75651115 A T MAGEE1 Missense_Mutation p.Q931L 0.23 tolerated(0.22) benign(0.049) TCGA-43-8118-01 X 76874386 76874386 C A ATRX Missense_Mutation p.R1779I 0.15 probably_damaging(1) TCGA-43-8118-01 X 78216452 78216452 G T P2RY10 Missense_Mutation p.K145N 0.13 deleterious(0.01) probably_damaging(0.954) TCGA-43-8118-01 X 99917222 99917222 C G SRPX2 Missense_Mutation p.C71W 0.12 deleterious(0) probably_damaging(0.999) TCGA-43-A474-01 10 103827054 103827054 C T HPS6 Missense_Mutation p.A608V 0.55 deleterious(0) probably_damaging(0.999) TCGA-43-A474-01 10 114911626 114911626 C A TCF7L2 Missense_Mutation p.Q382K 0.51 deleterious(0) possibly_damaging(0.669) TCGA-43-A474-01 10 126694124 126694124 G A CTBP2 Intron 0.31 TCGA-43-A474-01 10 18266984 18266984 G T SLC39A12 Missense_Mutation p.G302V 0.24 tolerated(0.51) benign(0.018) TCGA-43-A474-01 10 23270283 23270283 C T ARMC3 Missense_Mutation p.L311F 0.21 tolerated(0.17) benign(0.03) TCGA-43-A474-01 10 50827770 50827770 G T CHAT Splice_Site p.X130_splice 0.46 TCGA-43-A474-01 10 6152021 6152021 C A RBM17 Missense_Mutation p.P212Q 0.37 deleterious(0.02) probably_damaging(0.997) TCGA-43-A474-01 10 63759958 63759958 A T ARID5B Missense_Mutation p.D204V 0.55 deleterious(0) possibly_damaging(0.61) TCGA-43-A474-01 10 70719900 70719900 A T DDX21 Missense_Mutation p.E142D 0.45 tolerated(1) benign(0.002) TCGA-43-A474-01 10 75487095 75487095 C T RP11-464F9.1 RNA 0.28 TCGA-43-A474-01 10 7605094 7605094 T A ITIH5 Silent p.P927P 0.39 TCGA-43-A474-01 10 76735728 76735728 G T KAT6B Missense_Mutation p.D545Y 0.66 probably_damaging(0.93) TCGA-43-A474-01 10 8115975 8115975 G A GATA3 Missense_Mutation p.A442T 0.20 tolerated(0.12) probably_damaging(0.999) TCGA-43-A474-01 10 81700545 81700545 C T SFTPD Splice_Site p.X223_splice 0.53 TCGA-43-A474-01 10 89720858 89720858 T A PTEN Missense_Mutation p.F337I 0.32 deleterious(0) probably_damaging(0.993) TCGA-43-A474-01 11 1017962 1017962 G T MUC6 Silent p.P1613P 0.05 TCGA-43-A474-01 11 102937187 102937187 C G DCUN1D5 Splice_Site p.X150_splice 0.47 TCGA-43-A474-01 11 107682431 107682431 C T SLC35F2 Missense_Mutation p.V126I 0.46 tolerated(0.06) possibly_damaging(0.692) TCGA-43-A474-01 11 119535663 119535663 C G PVRL1 Missense_Mutation p.E450Q 0.40 deleterious(0.05) benign(0.057) TCGA-43-A474-01 11 122659827 122659827 C T UBASH3B Missense_Mutation p.P264L 0.27 deleterious(0.02) probably_damaging(1) TCGA-43-A474-01 11 12345525 12345525 G A MICALCL Missense_Mutation p.E515K 0.24 tolerated(0.05) benign(0.275) TCGA-43-A474-01 11 123598221 123598221 C T ZNF202 Silent p.E305E 0.25 TCGA-43-A474-01 11 123848041 123848041 A T OR10S1 Missense_Mutation p.F120I 0.22 deleterious(0.01) benign(0.312) TCGA-43-A474-01 11 123900947 123900947 C G OR10G8 Silent p.A206A 0.42 TCGA-43-A474-01 11 124310660 124310660 C G OR8B8 Missense_Mutation p.V108L 0.29 deleterious_low_confidence(0) benign(0.291) TCGA-43-A474-01 11 124626478 124626478 G C ESAM Missense_Mutation p.S137C 0.25 deleterious(0.05) possibly_damaging(0.738) TCGA-43-A474-01 11 124749797 124749797 C A ROBO3 Missense_Mutation p.A1304E 0.53 tolerated_low_confidence(1) benign(0.091) TCGA-43-A474-01 11 125780309 125780309 G T DDX25 Silent p.V186V 0.37 TCGA-43-A474-01 11 134239707 134239707 G T GLB1L2 Missense_Mutation p.A346S 0.21 deleterious(0.01) probably_damaging(0.99) TCGA-43-A474-01 11 134244038 134244038 G T GLB1L2 Splice_Site p.X532_splice 0.34 TCGA-43-A474-01 11 17452401 17452401 G A ABCC8 Silent p.L593L 0.56 TCGA-43-A474-01 11 18158871 18158871 C G MRGPRX3 Missense_Mutation p.A41G 0.38 tolerated(1) benign(0) TCGA-43-A474-01 11 30915929 30915929 G T DCDC1 Silent p.R1587R 0.19 TCGA-43-A474-01 11 31312317 31312317 C G DCDC1 Missense_Mutation p.K279N 0.21 deleterious(0) probably_damaging(0.971) TCGA-43-A474-01 11 47261724 47261724 C T ACP2 Silent p.R405R 0.30 TCGA-43-A474-01 11 4903572 4903572 T C OR51T1 Missense_Mutation p.L175P 0.36 deleterious(0) probably_damaging(0.979) TCGA-43-A474-01 11 4928688 4928688 C T OR51A7 Missense_Mutation p.P30L 0.34 deleterious(0.05) benign(0.216) TCGA-43-A474-01 11 5013312 5013312 C T MMP26 Silent p.F238F 0.38 TCGA-43-A474-01 11 55579282 55579282 C A OR5L1 Missense_Mutation p.L114M 0.32 tolerated(0.21) probably_damaging(1) TCGA-43-A474-01 11 55999802 55999802 A T OR5T2 Missense_Mutation p.V287E 0.27 deleterious(0) probably_damaging(0.993) TCGA-43-A474-01 11 6048498 6048498 T A OR56A1 Missense_Mutation p.Q146L 0.34 tolerated(0.22) benign(0.036) TCGA-43-A474-01 11 60561516 60561516 G T MS4A10 Missense_Mutation p.K144N 0.38 deleterious(0) probably_damaging(0.997) TCGA-43-A474-01 11 74109130 74109130 T C PGM2L1 Missense_Mutation p.D26G 0.31 deleterious(0.01) benign(0.129) TCGA-43-A474-01 11 7817747 7817747 T C OR5P2 Missense_Mutation p.Y248C 0.41 deleterious(0) probably_damaging(0.994) TCGA-43-A474-01 11 7981172 7981172 T A NLRP10 3'UTR 0.30 TCGA-43-A474-01 11 92613949 92613949 G A FAT3 Silent p.E4060E 0.32 TCGA-43-A474-01 11 93844981 93844981 C A HEPHL1 Missense_Mutation p.S1134Y 0.19 tolerated_low_confidence(0.45) benign(0.033) TCGA-43-A474-01 12 101873401 101873401 G T SPIC Missense_Mutation p.V47F 0.12 tolerated(0.16) benign(0.299) TCGA-43-A474-01 12 110968559 110968559 C T RAD9B Intron 0.34 TCGA-43-A474-01 12 111336915 111336915 T A CCDC63 Missense_Mutation p.L443H 0.31 deleterious(0) probably_damaging(0.992) TCGA-43-A474-01 12 117672461 117672461 G A NOS1 Silent p.L1082L 0.49 TCGA-43-A474-01 12 121947703 121947703 C A KDM2B Silent p.P438P 0.40 TCGA-43-A474-01 12 122709147 122709147 T C DIABLO Missense_Mutation p.K32R 0.55 tolerated(1) benign(0.009) TCGA-43-A474-01 12 123433212 123433213 - G ABCB9 Frame_Shift_Ins p.I338Hfs*47 0.23 TCGA-43-A474-01 12 129558366 129558366 C A TMEM132D 3'UTR 0.25 TCGA-43-A474-01 12 18499742 18499742 C A PIK3C2G Missense_Mutation p.H533N 0.39 deleterious(0) probably_damaging(0.984) TCGA-43-A474-01 12 20801705 20801705 T G PDE3A Nonsense_Mutation p.Y883* 0.50 TCGA-43-A474-01 12 21069171 21069171 C G SLCO1B3 Missense_Mutation p.A700G 0.41 tolerated_low_confidence(0.1) benign(0.014) TCGA-43-A474-01 12 29514613 29514613 T C ERGIC2 Silent p.V113V 0.30 TCGA-43-A474-01 12 2967863 2967863 C T FOXM1 Missense_Mutation p.E783K 0.28 deleterious(0.02) benign(0.157) TCGA-43-A474-01 12 43944802 43944802 T C ADAMTS20 Silent p.A121A 0.38 TCGA-43-A474-01 12 48547238 48547238 G T ASB8 Missense_Mutation p.S14R 0.44 tolerated(0.63) possibly_damaging(0.766) TCGA-43-A474-01 12 49425315 49425315 C T KMT2D Silent p.Q4391Q 0.60 TCGA-43-A474-01 12 50149538 50149538 G C TMBIM6 Missense_Mutation p.G154R 0.17 deleterious(0) probably_damaging(1) TCGA-43-A474-01 12 50794733 50794733 C T LARP4 5'UTR 0.47 TCGA-43-A474-01 12 51585465 51585465 C G POU6F1 Silent p.R158R 0.21 TCGA-43-A474-01 12 53683912 53683912 A T ESPL1 Silent p.G1719G 0.19 TCGA-43-A474-01 12 56092244 56092244 C T ITGA7 Missense_Mutation p.R376Q 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-43-A474-01 12 56491682 56491682 G T ERBB3 Silent p.L858L 0.28 TCGA-43-A474-01 12 56558322 56558322 G A SMARCC2 Silent p.P1111P 0.54 TCGA-43-A474-01 12 67686458 67686458 C T CAND1 Missense_Mutation p.T90I 0.20 deleterious(0.03) possibly_damaging(0.544) TCGA-43-A474-01 12 70946768 70946768 G T PTPRB Missense_Mutation p.P1726T 0.14 deleterious(0) probably_damaging(1) TCGA-43-A474-01 12 71918208 71918208 A G LGR5 Missense_Mutation p.T103A 0.52 tolerated(0.14) probably_damaging(0.988) TCGA-43-A474-01 12 78400257 78400257 T A NAV3 Missense_Mutation p.S313R 0.23 deleterious(0.02) benign(0.429) TCGA-43-A474-01 12 80672809 80672809 G C OTOGL Missense_Mutation p.V922L 0.40 deleterious(0.02) benign(0.079) TCGA-43-A474-01 12 8374606 8374606 G A FAM90A1 Missense_Mutation p.R403C 0.47 deleterious(0.04) benign(0.003) TCGA-43-A474-01 13 108861511 108861511 T A LIG4 Silent p.A702A 0.19 TCGA-43-A474-01 13 28127557 28127557 G T LNX2 Silent p.I522I 0.20 TCGA-43-A474-01 13 28592681 28592681 C T FLT3 Missense_Mutation p.G822R 0.39 deleterious(0) probably_damaging(0.999) TCGA-43-A474-01 13 39264808 39264808 G C FREM2 Missense_Mutation p.Q1109H 0.38 deleterious(0.01) probably_damaging(0.94) TCGA-43-A474-01 13 41768037 41768037 G A KBTBD7 Silent p.A119A 0.16 TCGA-43-A474-01 13 42877071 42877071 C T AKAP11 Missense_Mutation p.P1397S 0.27 tolerated(0.23) benign(0.076) TCGA-43-A474-01 13 46288281 46288281 G T SPERT Missense_Mutation p.R374L 0.27 tolerated(0.13) benign(0.026) TCGA-43-A474-01 13 61987575 61987575 C T PCDH20 Silent p.P219P 0.27 TCGA-43-A474-01 13 72147145 72147145 C A DACH1 Splice_Site p.X378_splice 0.41 TCGA-43-A474-01 13 75869030 75869030 A G TBC1D4 Silent p.F1092F 0.28 TCGA-43-A474-01 14 105409223 105409223 C T AHNAK2 Missense_Mutation p.D4189N 0.20 probably_damaging(0.92) TCGA-43-A474-01 14 106573414 106573414 C A IGHV3-11 Missense_Mutation p.R57L 0.64 deleterious_low_confidence(0.01) benign(0.404) TCGA-43-A474-01 14 19553589 19553589 G T POTEG Missense_Mutation p.R58M 0.05 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-43-A474-01 14 20020048 20020048 C A POTEM Missense_Mutation p.R58M 0.08 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-43-A474-01 14 22279872 22279872 G T TRAV9-1 Missense_Mutation p.D21Y 0.48 deleterious(0) possibly_damaging(0.551) TCGA-43-A474-01 14 22392787 22392787 C A TRAV14DV4 Missense_Mutation p.L104M 0.38 TCGA-43-A474-01 14 22392788 22392788 T A TRAV14DV4 Missense_Mutation p.L104Q 0.38 TCGA-43-A474-01 14 22782966 22782966 T A TRAV40 Splice_Site p.X15_splice 0.42 TCGA-43-A474-01 14 24879352 24879352 A T NYNRIN Silent p.S784S 0.38 TCGA-43-A474-01 14 35264944 35264944 G A BAZ1A Nonsense_Mutation p.R386* 0.37 TCGA-43-A474-01 14 45431724 45431724 G T FAM179B Missense_Mutation p.D34Y 0.13 deleterious_low_confidence(0) probably_damaging(1) TCGA-43-A474-01 14 47504275 47504275 G A MDGA2 Silent p.T586T 0.37 TCGA-43-A474-01 14 47504276 47504276 G T MDGA2 Missense_Mutation p.T586N 0.38 deleterious(0) probably_damaging(0.992) TCGA-43-A474-01 14 51378717 51378717 C A PYGL Missense_Mutation p.R602S 0.23 deleterious(0) probably_damaging(0.988) TCGA-43-A474-01 14 55818310 55818310 A G FBXO34 Missense_Mutation p.N401S 0.48 tolerated(0.61) benign(0.015) TCGA-43-A474-01 14 68219162 68219162 G T ZFYVE26 Missense_Mutation p.Q2424K 0.83 deleterious(0.01) probably_damaging(0.919) TCGA-43-A474-01 14 69256851 69256851 T A ZFP36L1 Missense_Mutation p.H139L 0.70 deleterious(0) probably_damaging(0.999) TCGA-43-A474-01 14 75580102 75580102 G T NEK9 Missense_Mutation p.P293H 0.34 deleterious(0) probably_damaging(0.99) TCGA-43-A474-01 14 92105512 92105512 C G CATSPERB Missense_Mutation p.K505N 0.21 deleterious(0.02) probably_damaging(0.962) TCGA-43-A474-01 14 93299614 93299614 G A GOLGA5 Missense_Mutation p.E623K 0.33 deleterious(0.01) possibly_damaging(0.756) TCGA-43-A474-01 14 94909088 94909088 G A SERPINA11 Missense_Mutation p.S375L 0.64 deleterious(0) probably_damaging(0.948) TCGA-43-A474-01 14 95029889 95029889 G A SERPINA4 Missense_Mutation p.V24I 0.75 tolerated(0.22) benign(0.001) TCGA-43-A474-01 15 20496747 20496747 T C CHEK2P2 RNA 0.29 TCGA-43-A474-01 15 20644028 20644028 C T HERC2P3 RNA 0.15 TCGA-43-A474-01 15 25477407 25477407 C A SNORD115-33 3'Flank 0.43 TCGA-43-A474-01 15 26806184 26806184 G T GABRB3 Silent p.A325A 0.27 TCGA-43-A474-01 15 29398932 29398932 G A APBA2 Silent p.S609S 0.21 TCGA-43-A474-01 15 32971996 32971996 G T SCG5 Missense_Mutation p.G86C 0.20 deleterious(0) probably_damaging(1) TCGA-43-A474-01 15 44620981 44620981 G T CASC4 Nonsense_Mutation p.E161* 0.40 TCGA-43-A474-01 15 48413250 48413250 A - SLC24A5 Frame_Shift_Del p.G6Afs*65 0.22 TCGA-43-A474-01 15 49935673 49935673 A C DTWD1 Missense_Mutation p.R271S 0.22 tolerated(0.45) benign(0.004) TCGA-43-A474-01 15 54527245 54527245 A G UNC13C Missense_Mutation p.Y1030C 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-43-A474-01 15 55965610 55965610 A G PRTG Missense_Mutation p.V604A 0.47 tolerated(0.35) benign(0.004) TCGA-43-A474-01 15 60919506 60919506 C G RORA Missense_Mutation p.G23A 0.48 deleterious_low_confidence(0) benign(0.005) TCGA-43-A474-01 15 72700320 72700320 A C TMEM202 3'UTR 0.56 TCGA-43-A474-01 15 73595016 73595016 A G NEO1 Silent p.L1455L 0.38 TCGA-43-A474-01 15 78322487 78322487 C A TBC1D2B Missense_Mutation p.G237W 0.26 deleterious(0) probably_damaging(1) TCGA-43-A474-01 15 79750232 79750232 G T KIAA1024 Silent p.R581R 0.12 TCGA-43-A474-01 15 80767417 80767417 C T ARNT2 Nonsense_Mutation p.R159* 0.04 TCGA-43-A474-01 15 86266536 86266536 G T AKAP13 Missense_Mutation p.A2248S 0.48 tolerated(0.24) benign(0.151) TCGA-43-A474-01 16 11781801 11781801 C A TXNDC11 Missense_Mutation p.A689S 0.46 tolerated(0.21) benign(0.348) TCGA-43-A474-01 16 1391422 1391422 C T BAIAP3 Silent p.A256A 0.41 TCGA-43-A474-01 16 19516274 19516274 C G GDE1 Missense_Mutation p.W259C 0.47 deleterious(0) probably_damaging(0.988) TCGA-43-A474-01 16 20362122 20362122 G T UMOD Intron 0.33 TCGA-43-A474-01 16 20788730 20788730 C G ACSM3 Missense_Mutation p.Q156E 0.25 tolerated(0.19) benign(0.015) TCGA-43-A474-01 16 24581161 24581161 G C RBBP6 Missense_Mutation p.E1050D 0.23 tolerated_low_confidence(0.15) unknown(0) TCGA-43-A474-01 16 29706300 29706300 G T QPRT Missense_Mutation p.R110L 0.15 deleterious(0) probably_damaging(0.986) TCGA-43-A474-01 16 31371246 31371246 C T ITGAX Silent p.S189S 0.45 TCGA-43-A474-01 16 3367430 3367430 A C ZNF75A Missense_Mutation p.H151P 0.19 deleterious(0.02) benign(0.017) TCGA-43-A474-01 16 53301874 53301874 G T CHD9 Missense_Mutation p.R1518L 0.27 probably_damaging(0.992) TCGA-43-A474-01 16 67265681 67265681 C T FHOD1 Silent p.K748K 0.36 TCGA-43-A474-01 16 70954605 70954605 C A HYDIN Silent p.G2558G 0.42 TCGA-43-A474-01 16 72992416 72992416 C A ZFHX3 Silent p.L543L 0.49 TCGA-43-A474-01 16 72993516 72993516 C T ZFHX3 Missense_Mutation p.A177T 0.09 benign(0.037) TCGA-43-A474-01 16 76482693 76482693 C A CNTNAP4 Missense_Mutation p.L233M 0.43 tolerated(0.22) benign(0.039) TCGA-43-A474-01 16 77327139 77327139 C A ADAMTS18 Missense_Mutation p.G1008V 0.22 deleterious(0) probably_damaging(1) TCGA-43-A474-01 16 86600886 86600886 G C FOXC2 5'UTR 0.24 TCGA-43-A474-01 16 87678468 87678468 G A JPH3 Silent p.P329P 0.21 TCGA-43-A474-01 16 89611134 89611134 C G SPG7 Missense_Mutation p.P468R 0.23 tolerated(0.07) probably_damaging(0.999) TCGA-43-A474-01 16 89929960 89929960 C G SPIRE2 Missense_Mutation p.A551G 0.20 deleterious(0.03) probably_damaging(1) TCGA-43-A474-01 17 10404807 10404807 C A MYH1 Nonsense_Mutation p.E1120* 0.54 TCGA-43-A474-01 17 28706547 28706547 C T CPD Silent p.N183N 0.15 TCGA-43-A474-01 17 31082534 31082534 T C MYO1D Silent p.K481K 0.12 TCGA-43-A474-01 17 31439004 31439005 - C ASIC2 Frame_Shift_Ins p.T264Dfs*15 0.44 TCGA-43-A474-01 17 36704798 36704798 G T SRCIN1 Missense_Mutation p.L1089I 0.51 deleterious(0) possibly_damaging(0.876) TCGA-43-A474-01 17 40180086 40180086 T C ZNF385C Silent p.S383S 0.42 TCGA-43-A474-01 17 42427815 42427815 C A GRN Silent p.S156S 0.23 TCGA-43-A474-01 17 4541966 4541966 C T ALOX15 Missense_Mutation p.A186T 0.14 tolerated(0.36) benign(0.206) TCGA-43-A474-01 17 48217465 48217465 T C PPP1R9B Missense_Mutation p.D618G 0.24 deleterious(0.02) possibly_damaging(0.871) TCGA-43-A474-01 17 48678409 48678409 C A CACNA1G Intron 0.40 TCGA-43-A474-01 17 61611471 61611471 C A KCNH6 Silent p.L300L 0.46 TCGA-43-A474-01 17 64881312 64881312 G T CACNG5 Missense_Mutation p.L261F 0.50 deleterious_low_confidence(0.04) benign(0.352) TCGA-43-A474-01 17 66039402 66039402 C T KPNA2 Nonsense_Mutation p.R285* 0.39 TCGA-43-A474-01 17 66920854 66920854 T A ABCA8 Missense_Mutation p.K477I 0.22 deleterious(0) probably_damaging(0.966) TCGA-43-A474-01 17 67024733 67024733 C A ABCA9 Nonsense_Mutation p.G520* 0.18 TCGA-43-A474-01 17 70117691 70117691 C A SOX9 Missense_Mutation p.F53L 0.31 tolerated(1) benign(0.011) TCGA-43-A474-01 17 72522052 72522052 G T CD300LB Missense_Mutation p.Q106K 0.20 tolerated(0.39) benign(0.01) TCGA-43-A474-01 17 73625342 73625342 C T RECQL5 Missense_Mutation p.A721T 0.28 tolerated(0.12) benign(0.022) TCGA-43-A474-01 17 7577610 7577610 T C TP53 Splice_Site p.X225_splice 0.74 TCGA-43-A474-01 17 79514353 79514353 G C C17orf70 Silent p.G585G 0.20 TCGA-43-A474-01 18 2891332 2891332 G A EMILIN2 Missense_Mutation p.G403S 0.71 tolerated(0.17) benign(0.017) TCGA-43-A474-01 18 2891925 2891925 C A EMILIN2 Silent p.T600T 0.78 TCGA-43-A474-01 18 31323479 31323479 G T ASXL3 Nonsense_Mutation p.E1223* 0.10 TCGA-43-A474-01 18 47101830 47101830 C A LIPG Silent p.T221T 0.17 TCGA-43-A474-01 18 7016663 7016663 T C LAMA1 Missense_Mutation p.Y939C 0.71 tolerated(0.07) probably_damaging(0.98) TCGA-43-A474-01 18 71740918 71740918 G T FBXO15 Silent p.P437P 0.09 TCGA-43-A474-01 18 9557244 9557244 A G PPP4R1 Missense_Mutation p.L722P 0.70 deleterious(0) probably_damaging(0.999) TCGA-43-A474-01 19 10662583 10662583 G A ATG4D Missense_Mutation p.R326H 0.50 tolerated(0.09) probably_damaging(0.986) TCGA-43-A474-01 19 1112433 1112433 G A SBNO2 Missense_Mutation p.P828L 0.56 deleterious(0) possibly_damaging(0.894) TCGA-43-A474-01 19 12060518 12060518 G C ZNF700 Missense_Mutation p.G560A 0.42 deleterious(0.03) probably_damaging(0.966) TCGA-43-A474-01 19 12858332 12858332 G A ASNA1 Missense_Mutation p.V281I 0.40 tolerated(0.16) benign(0.065) TCGA-43-A474-01 19 14263721 14263721 G A LPHN1 Missense_Mutation p.H1105Y 0.41 deleterious(0) possibly_damaging(0.544) TCGA-43-A474-01 19 15198864 15198864 G A OR1I1 Missense_Mutation p.A330T 0.13 deleterious_low_confidence(0.03) benign(0) TCGA-43-A474-01 19 15852528 15852528 G T OR10H3 Missense_Mutation p.G109V 0.23 deleterious(0) probably_damaging(0.978) TCGA-43-A474-01 19 17086962 17086962 C T CPAMD8 Splice_Site p.X634_splice 0.17 TCGA-43-A474-01 19 2117310 2117310 C A AP3D1 Silent p.V590V 0.21 TCGA-43-A474-01 19 2222231 2222231 C T DOT1L Silent p.P1021P 0.29 TCGA-43-A474-01 19 22363141 22363141 A G ZNF676 Missense_Mutation p.W460R 0.41 tolerated(0.51) benign(0.265) TCGA-43-A474-01 19 22784191 22784191 C A AC011467.1 5'Flank 0.33 TCGA-43-A474-01 19 2807451 2807451 C T THOP1 Nonsense_Mutation p.Q300* 0.33 TCGA-43-A474-01 19 30935261 30935261 G A ZNF536 Silent p.Q264Q 0.37 TCGA-43-A474-01 19 35804285 35804285 G A MAG Silent p.G603G 0.20 TCGA-43-A474-01 19 36018957 36018957 C A SBSN Missense_Mutation p.G76V 0.18 deleterious(0) probably_damaging(0.999) TCGA-43-A474-01 19 36558818 36558818 G C WDR62 Missense_Mutation p.G263A 0.38 deleterious(0) probably_damaging(0.91) TCGA-43-A474-01 19 39026655 39026655 C T RYR1 Silent p.A3845A 0.21 TCGA-43-A474-01 19 39410462 39410462 C A SARS2 Silent p.G235G 0.30 TCGA-43-A474-01 19 40433305 40433305 C A FCGBP Missense_Mutation p.A322S 0.49 benign(0.027) TCGA-43-A474-01 19 46029246 46029246 G C VASP Missense_Mutation p.E364Q 0.14 deleterious(0.03) probably_damaging(0.988) TCGA-43-A474-01 19 49261360 49261360 C A FGF21 Silent p.P171P 0.20 TCGA-43-A474-01 19 49793776 49793776 G A SLC6A16 Intron 0.38 TCGA-43-A474-01 19 49812077 49812077 C A SLC6A16 Intron 0.24 TCGA-43-A474-01 19 51165279 51165279 G T SHANK1 Silent p.T2143T 0.45 TCGA-43-A474-01 19 53793415 53793415 T A BIRC8 Missense_Mutation p.E71D 0.45 tolerated(0.13) benign(0.009) TCGA-43-A474-01 19 54377789 54377789 C T MYADM 3'UTR 0.30 TCGA-43-A474-01 19 54966604 54966604 G C LENG8 Missense_Mutation p.E295Q 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-43-A474-01 19 56156391 56156391 C T ZNF581 Missense_Mutation p.R152C 0.33 deleterious(0) possibly_damaging(0.776) TCGA-43-A474-01 19 56424174 56424174 G A NLRP13 Nonsense_Mutation p.Q337* 0.21 TCGA-43-A474-01 19 56538748 56538748 G C NLRP5 Missense_Mutation p.E383D 0.62 tolerated(0.32) benign(0.046) TCGA-43-A474-01 19 6535004 6535004 G A TNFSF9 Missense_Mutation p.G231D 0.52 tolerated(0.18) benign(0.287) TCGA-43-A474-01 19 7977245 7977245 G A MAP2K7 Missense_Mutation p.V397I 0.42 tolerated(0.36) benign(0.013) TCGA-43-A474-01 19 8651502 8651502 C A ADAMTS10 Silent p.G781G 0.26 TCGA-43-A474-01 19 9325466 9325466 T C OR7D4 Silent p.G16G 0.50 TCGA-43-A474-01 19 9525317 9525317 G A ZNF266 Missense_Mutation p.T95I 0.13 tolerated(0.06) benign(0.004) TCGA-43-A474-01 1 118657953 118657953 G A SPAG17 Nonsense_Mutation p.R143* 0.21 TCGA-43-A474-01 1 1277171 1277171 C G DVL1 Missense_Mutation p.G161R 0.78 deleterious(0.05) probably_damaging(0.998) TCGA-43-A474-01 1 153800540 153800540 G A GATAD2B Missense_Mutation p.P95L 0.37 tolerated(0.28) benign(0.065) TCGA-43-A474-01 1 154931671 154931671 T C PYGO2 Missense_Mutation p.T269A 0.30 tolerated(0.51) benign(0) TCGA-43-A474-01 1 156128182 156128182 C A SEMA4A Missense_Mutation p.Q123K 0.34 deleterious(0.02) benign(0.309) TCGA-43-A474-01 1 159683767 159683767 T C CRP Missense_Mutation p.K75E 0.41 tolerated(0.07) benign(0.014) TCGA-43-A474-01 1 159683865 159683865 G T CRP Missense_Mutation p.A42E 0.43 tolerated(0.08) possibly_damaging(0.778) TCGA-43-A474-01 1 162748457 162748457 C A DDR2 Missense_Mutation p.Q791K 0.35 tolerated(0.59) benign(0.41) TCGA-43-A474-01 1 167814826 167814826 C T ADCY10 Silent p.K994K 0.40 TCGA-43-A474-01 1 175365929 175365929 C T TNR Missense_Mutation p.D331N 0.35 tolerated(0.7) benign(0.013) TCGA-43-A474-01 1 175375659 175375659 G C TNR Silent p.V64V 0.43 TCGA-43-A474-01 1 176525406 176525406 G T PAPPA2 5'UTR 0.14 TCGA-43-A474-01 1 176564294 176564294 C T PAPPA2 Silent p.P518P 0.38 TCGA-43-A474-01 1 180062547 180062547 G C CEP350 Missense_Mutation p.S2436T 0.27 possibly_damaging(0.649) TCGA-43-A474-01 1 196648890 196648890 G T CFH Nonsense_Mutation p.E253* 0.19 TCGA-43-A474-01 1 197021890 197021890 A G F13B Silent p.L477L 0.24 TCGA-43-A474-01 1 197168935 197168935 C A ZBTB41 Missense_Mutation p.E223D 0.09 tolerated_low_confidence(0.09) benign(0.197) TCGA-43-A474-01 1 200948694 200948694 G A KIF21B Missense_Mutation p.R1377W 0.37 deleterious(0) probably_damaging(0.996) TCGA-43-A474-01 1 211192227 211192227 G A KCNH1 Silent p.N310N 0.19 TCGA-43-A474-01 1 216538390 216538390 A G USH2A Missense_Mutation p.V230A 0.33 benign(0.099) TCGA-43-A474-01 1 223568638 223568638 G T C1orf65 Missense_Mutation p.Q607H 0.08 tolerated(0.55) benign(0.004) TCGA-43-A474-01 1 226829751 226829751 G T ITPKB Silent p.I774I 0.35 TCGA-43-A474-01 1 228404829 228404829 C A OBSCN Nonsense_Mutation p.Y831* 0.28 TCGA-43-A474-01 1 229773634 229773634 G T URB2 Missense_Mutation p.V1092L 0.39 tolerated(0.34) benign(0.001) TCGA-43-A474-01 1 230795210 230795210 G C COG2 Missense_Mutation p.E25Q 0.25 tolerated(0.31) benign(0.431) TCGA-43-A474-01 1 23520386 23520386 G A HTR1D Silent p.I109I 0.27 TCGA-43-A474-01 1 236925896 236925896 C A ACTN2 Missense_Mutation p.L888I 0.51 tolerated(0.11) probably_damaging(0.999) TCGA-43-A474-01 1 240601413 240601413 G A FMN2 Missense_Mutation p.E1655K 0.36 probably_damaging(0.934) TCGA-43-A474-01 1 2428049 2428049 G A PLCH2 Silent p.A586A 0.23 TCGA-43-A474-01 1 245851520 245851520 G A KIF26B Silent p.A1745A 0.34 TCGA-43-A474-01 1 248004816 248004816 C T OR11L1 Missense_Mutation p.S128N 0.39 tolerated(0.69) benign(0.002) TCGA-43-A474-01 1 248128968 248128968 G T OR2AK2 Missense_Mutation p.C112F 0.37 deleterious(0) probably_damaging(0.999) TCGA-43-A474-01 1 35972284 35972284 T C KIAA0319L Missense_Mutation p.I199V 0.68 tolerated(0.69) benign(0) TCGA-43-A474-01 1 52901127 52901127 C A ZCCHC11 Silent p.L1391L 0.78 TCGA-43-A474-01 1 70494033 70494033 C A LRRC7 Silent p.A620A 0.68 TCGA-43-A474-01 1 75039135 75039135 G C C1orf173 Missense_Mutation p.I753M 0.52 deleterious(0.02) benign(0.267) TCGA-43-A474-01 1 84415667 84415667 G A TTLL7 Missense_Mutation p.R54C 0.65 deleterious(0) probably_damaging(0.998) TCGA-43-A474-01 20 22562638 22562638 C A FOXA2 Silent p.V414V 0.14 TCGA-43-A474-01 20 23584269 23584269 C T CST9 Missense_Mutation p.E120K 0.04 tolerated(0.11) benign(0.288) TCGA-43-A474-01 20 31583518 31583518 C T SUN5 Silent p.K147K 0.38 TCGA-43-A474-01 20 34090424 34090424 C A CEP250 Silent p.G1409G 0.35 TCGA-43-A474-01 20 48600648 48600648 G A SNAI1 Missense_Mutation p.E124K 0.40 tolerated(1) benign(0.02) TCGA-43-A474-01 20 50238703 50238703 C A ATP9A Missense_Mutation p.M675I 0.58 deleterious(0) possibly_damaging(0.817) TCGA-43-A474-01 20 6759188 6759188 C T BMP2 Missense_Mutation p.R215W 0.24 deleterious(0) probably_damaging(0.995) TCGA-43-A474-01 21 10910393 10910393 C - TPTE Frame_Shift_Del p.D455Ifs*9 0.14 TCGA-43-A474-01 21 11039157 11039157 G T BAGE2 RNA 0.11 TCGA-43-A474-01 21 11098853 11098853 C A BAGE2 RNA 0.46 TCGA-43-A474-01 21 31971054 31971054 C G KRTAP6-2 Missense_Mutation p.R47P 0.59 unknown(0) TCGA-43-A474-01 21 32567584 32567584 T C TIAM1 Missense_Mutation p.Q844R 0.66 tolerated(0.36) benign(0) TCGA-43-A474-01 21 43412883 43412883 G A ZBTB21 Missense_Mutation p.S441L 0.61 tolerated(0.06) benign(0.014) TCGA-43-A474-01 21 47970604 47970604 T C DIP2A Missense_Mutation p.M929T 0.62 deleterious(0) possibly_damaging(0.775) TCGA-43-A474-01 22 19178909 19178909 G C CLTCL1 Missense_Mutation p.F1410L 0.40 deleterious(0) possibly_damaging(0.685) TCGA-43-A474-01 22 21133532 21133532 C T SERPIND1 Intron 0.34 TCGA-43-A474-01 22 21141302 21141302 G A SERPIND1 Missense_Mutation p.R483H 0.35 tolerated(0.17) possibly_damaging(0.701) TCGA-43-A474-01 22 21335369 21335369 G A AIFM3 3'UTR 0.38 TCGA-43-A474-01 22 25023569 25023569 C T GGT1 Silent p.T397T 0.15 TCGA-43-A474-01 22 26400691 26400691 G A MYO18B Missense_Mutation p.V2114I 0.08 tolerated(0.55) benign(0.006) TCGA-43-A474-01 22 26997952 26997952 C A CRYBB1 Missense_Mutation p.G156W 0.18 tolerated(0.11) probably_damaging(0.98) TCGA-43-A474-01 22 29833610 29833610 A C RFPL1 5'Flank 0.65 TCGA-43-A474-01 22 35943058 35943058 C A RASD2 Missense_Mutation p.Q68K 0.20 deleterious(0.01) possibly_damaging(0.803) TCGA-43-A474-01 22 37602530 37602530 T C SSTR3 3'UTR 0.08 TCGA-43-A474-01 22 39496335 39496335 C T APOBEC3H Missense_Mutation p.R18C 0.46 deleterious(0) probably_damaging(0.939) TCGA-43-A474-01 22 40066908 40066908 C A CACNA1I Silent p.I1496I 0.38 TCGA-43-A474-01 22 45279150 45279150 C T PHF21B Missense_Mutation p.R471H 0.27 deleterious(0.04) possibly_damaging(0.621) TCGA-43-A474-01 2 101598698 101598698 G T NPAS2 Silent p.S496S 0.17 TCGA-43-A474-01 2 11591812 11591812 C T E2F6 Silent p.Q167Q 0.19 TCGA-43-A474-01 2 121748370 121748370 G A GLI2 3'UTR 0.47 TCGA-43-A474-01 2 127834210 127834210 T G BIN1 Missense_Mutation p.K53Q 0.20 tolerated(0.1) probably_damaging(1) TCGA-43-A474-01 2 128767875 128767875 C A SAP130 Silent p.T305T 0.20 TCGA-43-A474-01 2 132021819 132021819 G T POTEE Missense_Mutation p.A931S 0.19 tolerated_low_confidence(0.07) benign(0.271) TCGA-43-A474-01 2 137814092 137814092 G T THSD7B Missense_Mutation p.C81F 0.58 deleterious(0) possibly_damaging(0.506) TCGA-43-A474-01 2 138762789 138762789 G T HNMT Missense_Mutation p.V173L 0.43 tolerated(0.28) benign(0.08) TCGA-43-A474-01 2 141625820 141625820 C G LRP1B Missense_Mutation p.W1394C 0.33 benign(0.074) TCGA-43-A474-01 2 1499831 1499831 C T TPO Missense_Mutation p.R693W 0.62 deleterious(0.02) possibly_damaging(0.723) TCGA-43-A474-01 2 153415317 153415317 A C FMNL2 Silent p.S141S 0.37 TCGA-43-A474-01 2 176948556 176948556 A T EVX2 5'UTR 0.40 TCGA-43-A474-01 2 179402291 179402291 G A TTN Missense_Mutation p.R33215W 0.42 TCGA-43-A474-01 2 179417319 179417319 A G TTN Missense_Mutation p.V30103A 0.39 TCGA-43-A474-01 2 179433022 179433022 G A TTN Missense_Mutation p.A25946V 0.23 TCGA-43-A474-01 2 179516844 179516844 G C TTN Missense_Mutation p.P13092A 0.31 TCGA-43-A474-01 2 179659689 179659689 G T TTN Missense_Mutation p.A402D 0.27 TCGA-43-A474-01 2 179664369 179664369 T A TTN Silent p.T253T 0.30 TCGA-43-A474-01 2 18737065 18737065 T C RDH14 Missense_Mutation p.R135G 0.24 deleterious(0.01) probably_damaging(0.911) TCGA-43-A474-01 2 188349701 188349701 G T TFPI Missense_Mutation p.F124L 0.44 tolerated(0.09) benign(0.06) TCGA-43-A474-01 2 190719382 190719382 G - PMS1 Frame_Shift_Del p.V462Lfs*14 0.25 TCGA-43-A474-01 2 192246289 192246289 G C MYO1B Silent p.R429R 0.28 TCGA-43-A474-01 2 197183825 197183825 C G HECW2 Missense_Mutation p.E597Q 0.17 tolerated_low_confidence(0.22) benign(0.008) TCGA-43-A474-01 2 20113465 20113465 C T WDR35 Missense_Mutation p.E1134K 0.19 tolerated(0.47) benign(0.005) TCGA-43-A474-01 2 207170789 207170789 G A ZDBF2 Missense_Mutation p.V513I 0.17 tolerated(0.16) benign(0.355) TCGA-43-A474-01 2 213921596 213921596 C A IKZF2 Missense_Mutation p.G123W 0.29 deleterious(0) probably_damaging(0.999) TCGA-43-A474-01 2 215275106 215275106 A T SPAG16 3'UTR 0.43 TCGA-43-A474-01 2 219691702 219691702 C G PRKAG3 Missense_Mutation p.D373H 0.48 tolerated(0.24) probably_damaging(0.984) TCGA-43-A474-01 2 220087056 220087056 G A ATG9A Silent p.F655F 0.26 TCGA-43-A474-01 2 224623440 224623440 T A AP1S3 Missense_Mutation p.T153S 0.47 tolerated_low_confidence(0.4) benign(0.045) TCGA-43-A474-01 2 225342996 225342996 C A CUL3 Missense_Mutation p.R699I 0.48 deleterious(0) probably_damaging(1) TCGA-43-A474-01 2 227778932 227778932 G T RHBDD1 Nonsense_Mutation p.G241* 0.21 TCGA-43-A474-01 2 228137696 228137696 C A COL4A3 Missense_Mutation p.P597H 0.33 unknown(0) TCGA-43-A474-01 2 228230831 228230831 C T TM4SF20 Missense_Mutation p.E127K 0.19 tolerated(0.07) benign(0.026) TCGA-43-A474-01 2 228882116 228882116 C A SPHKAP Missense_Mutation p.A1152S 0.10 deleterious(0) probably_damaging(0.999) TCGA-43-A474-01 2 233201258 233201258 G T DIS3L2 Missense_Mutation p.R859L 0.19 deleterious(0) possibly_damaging(0.491) TCGA-43-A474-01 2 25803648 25803648 A C DTNB Silent p.P217P 0.42 TCGA-43-A474-01 2 26539841 26539841 G T GPR113 Silent p.L147L 0.44 TCGA-43-A474-01 2 28827549 28827549 G T PLB1 Missense_Mutation p.G962C 0.31 deleterious(0) probably_damaging(1) TCGA-43-A474-01 2 33590419 33590419 T A LTBP1 Missense_Mutation p.D1520E 0.17 tolerated(0.25) benign(0.029) TCGA-43-A474-01 2 46803229 46803229 G T RHOQ Missense_Mutation p.D69Y 0.20 deleterious(0) probably_damaging(0.997) TCGA-43-A474-01 2 67630771 67630771 G T ETAA1 Missense_Mutation p.L319F 0.19 deleterious(0.03) possibly_damaging(0.905) TCGA-43-A474-01 2 74834212 74834212 C T M1AP Missense_Mutation p.A189T 0.12 tolerated(0.36) benign(0.234) TCGA-43-A474-01 2 79255421 79255421 A G REG3G 3'UTR 0.43 TCGA-43-A474-01 2 79349137 79349137 G C REG1A Silent p.S69S 0.14 TCGA-43-A474-01 2 87042542 87042542 G C CD8B 3'Flank 0.16 TCGA-43-A474-01 3 119328383 119328383 G T PLA1A Missense_Mutation p.M174I 0.54 tolerated(0.12) benign(0.008) TCGA-43-A474-01 3 150398252 150398252 C G FAM194A Intron 0.32 TCGA-43-A474-01 3 157099123 157099123 C T VEPH1 Missense_Mutation p.A317T 0.42 tolerated(0.11) benign(0.021) TCGA-43-A474-01 3 194336370 194336370 G T TMEM44 Silent p.A327A 0.04 TCGA-43-A474-01 3 19491796 19491796 A C KCNH8 Missense_Mutation p.E525A 0.29 tolerated(0.11) possibly_damaging(0.903) TCGA-43-A474-01 3 38044745 38044745 G T VILL Missense_Mutation p.Q582H 0.35 deleterious(0.01) probably_damaging(0.971) TCGA-43-A474-01 3 44763277 44763277 A G ZNF502 Missense_Mutation p.H323R 0.59 deleterious(0) possibly_damaging(0.464) TCGA-43-A474-01 3 51452179 51452179 C T VPRBP Missense_Mutation p.V817I 0.66 deleterious(0.02) benign(0.187) TCGA-43-A474-01 3 64627637 64627637 T A ADAMTS9 Missense_Mutation p.E581D 0.65 tolerated(0.28) benign(0.008) TCGA-43-A474-01 3 75478290 75478290 C A FAM86DP RNA 0.29 TCGA-43-A474-01 4 100789297 100789297 C T DAPP1 Silent p.N266N 0.41 TCGA-43-A474-01 4 103950027 103950027 G A SLC9B2 Silent p.A423A 0.23 TCGA-43-A474-01 4 114275001 114275001 T C ANK2 Silent p.L1743L 0.28 TCGA-43-A474-01 4 119229640 119229640 C A PRSS12 Nonsense_Mutation p.G528* 0.26 TCGA-43-A474-01 4 122059826 122059826 C A TNIP3 Intron 0.26 TCGA-43-A474-01 4 122254070 122254070 T A QRFPR Missense_Mutation p.S235C 0.36 deleterious(0.02) benign(0.141) TCGA-43-A474-01 4 122257963 122257963 T C QRFPR Missense_Mutation p.E187G 0.03 deleterious(0) benign(0.152) TCGA-43-A474-01 4 122853642 122853642 G T TRPC3 Silent p.A257A 0.29 TCGA-43-A474-01 4 122853695 122853695 C A TRPC3 Missense_Mutation p.A240S 0.24 deleterious(0) probably_damaging(0.999) TCGA-43-A474-01 4 125592443 125592443 C A ANKRD50 Missense_Mutation p.L663F 0.20 deleterious(0) probably_damaging(1) TCGA-43-A474-01 4 134071886 134071886 C A PCDH10 Missense_Mutation p.H197Q 0.31 deleterious(0.03) probably_damaging(0.993) TCGA-43-A474-01 4 134071887 134071887 C G PCDH10 Missense_Mutation p.R198G 0.30 deleterious(0.01) possibly_damaging(0.522) TCGA-43-A474-01 4 142651050 142651050 T A IL15 Silent p.V97V 0.30 TCGA-43-A474-01 4 162463693 162463693 T C FSTL5 Missense_Mutation p.T390A 0.32 tolerated(0.08) probably_damaging(0.977) TCGA-43-A474-01 4 165962176 165962176 C T TRIM60 Nonsense_Mutation p.R318* 0.20 TCGA-43-A474-01 4 166935643 166935643 G T TLL1 Missense_Mutation p.A325S 0.35 tolerated(0.51) benign(0.005) TCGA-43-A474-01 4 187629026 187629026 A C FAT1 Missense_Mutation p.N652K 0.38 benign(0.412) TCGA-43-A474-01 4 189068020 189068020 T C TRIML1 Silent p.L301L 0.43 TCGA-43-A474-01 4 39000511 39000511 G A TMEM156 Missense_Mutation p.S36L 0.58 deleterious(0) probably_damaging(0.976) TCGA-43-A474-01 4 52729874 52729874 A G DCUN1D4 Silent p.T45T 0.29 TCGA-43-A474-01 4 62599076 62599076 G T LPHN3 Missense_Mutation p.E333D 0.27 deleterious(0) probably_damaging(0.998) TCGA-43-A474-01 4 70071199 70071199 T A UGT2B11 Silent p.L363L 0.31 TCGA-43-A474-01 4 71388500 71388500 C G AMTN Missense_Mutation p.P28R 0.24 deleterious(0) probably_damaging(0.925) TCGA-43-A474-01 4 72215626 72215626 T A SLC4A4 Intron 0.30 TCGA-43-A474-01 4 78815389 78815389 C A MRPL1 Missense_Mutation p.P219T 0.18 deleterious(0) probably_damaging(1) TCGA-43-A474-01 4 84519799 84519799 A C AGPAT9 Missense_Mutation p.E376D 0.14 tolerated(0.22) benign(0.006) TCGA-43-A474-01 4 90170173 90170173 G C GPRIN3 Missense_Mutation p.H363Q 0.23 tolerated(0.45) benign(0.09) TCGA-43-A474-01 4 94751061 94751061 C T ATOH1 Silent p.S328S 0.28 TCGA-43-A474-01 4 99264302 99264302 G T RAP1GDS1 Missense_Mutation p.S43I 0.37 deleterious(0.03) possibly_damaging(0.872) TCGA-43-A474-01 4 998125 998125 G T IDUA Missense_Mutation p.V636L 0.67 tolerated(0.1) probably_damaging(0.99) TCGA-43-A474-01 5 11364999 11364999 C A CTNND2 Missense_Mutation p.G394V 0.82 deleterious(0) benign(0.196) TCGA-43-A474-01 5 122165295 122165295 G T SNX2 Silent p.L504L 0.69 TCGA-43-A474-01 5 122950114 122950114 G A CSNK1G3 3'UTR 0.59 TCGA-43-A474-01 5 129001272 129001272 G T ADAMTS19 Missense_Mutation p.A830S 0.50 deleterious(0) probably_damaging(0.992) TCGA-43-A474-01 5 131080381 131080381 C A FNIP1 Missense_Mutation p.W32L 0.12 deleterious(0) benign(0.341) TCGA-43-A474-01 5 13809268 13809268 G A DNAH5 Missense_Mutation p.T2546I 0.08 possibly_damaging(0.507) TCGA-43-A474-01 5 13830304 13830304 G T DNAH5 Missense_Mutation p.S2027Y 0.82 possibly_damaging(0.86) TCGA-43-A474-01 5 13864590 13864591 CC G DNAH5 Frame_Shift_Del p.G1504Afs*13 0.39 TCGA-43-A474-01 5 176722059 176722059 G T NSD1 Nonsense_Mutation p.E2564* 0.71 TCGA-43-A474-01 5 19747243 19747243 G C CDH18 Missense_Mutation p.H111D 0.78 deleterious(0) probably_damaging(0.995) TCGA-43-A474-01 5 19747244 19747244 G T CDH18 Silent p.I110I 0.78 TCGA-43-A474-01 5 23509167 23509167 G T PRDM9 Nonsense_Mutation p.E9* 0.70 TCGA-43-A474-01 5 23522482 23522482 A T PRDM9 Missense_Mutation p.E193V 0.11 deleterious(0) possibly_damaging(0.848) TCGA-43-A474-01 5 24535247 24535247 T C CDH10 Missense_Mutation p.N263S 0.87 deleterious(0) possibly_damaging(0.869) TCGA-43-A474-01 5 31799452 31799452 C T PDZD2 Missense_Mutation p.R33W 0.13 deleterious(0) probably_damaging(1) TCGA-43-A474-01 5 3599846 3599846 G T IRX1 Missense_Mutation p.A262S 0.78 tolerated(0.8) benign(0.001) TCGA-43-A474-01 5 40958213 40958213 G T C7 Nonsense_Mutation p.E447* 0.70 TCGA-43-A474-01 5 5232531 5232531 C G ADAMTS16 Silent p.P584P 0.09 TCGA-43-A474-01 5 54329681 54329681 G T GZMK Missense_Mutation p.G241V 0.71 deleterious(0) probably_damaging(1) TCGA-43-A474-01 5 56526993 56526993 C A GPBP1 Missense_Mutation p.H93N 0.70 deleterious(0.03) benign(0.302) TCGA-43-A474-01 5 7895895 7895895 C G MTRR Missense_Mutation p.P563A 0.11 tolerated(0.2) benign(0.437) TCGA-43-A474-01 5 79032753 79032753 C A CMYA5 Missense_Mutation p.T2722N 0.64 unknown(0) TCGA-43-A474-01 5 81601115 81601115 G T ATP6AP1L 5'UTR 0.55 TCGA-43-A474-01 5 94936650 94936650 A T ARSK Missense_Mutation p.H399L 0.60 tolerated(0.07) benign(0.155) TCGA-43-A474-01 6 123118053 123118053 G T SMPDL3A Missense_Mutation p.Q137H 0.46 deleterious(0.03) benign(0.049) TCGA-43-A474-01 6 127797023 127797023 G T SOGA3 Missense_Mutation p.S716R 0.47 tolerated(0.08) probably_damaging(0.999) TCGA-43-A474-01 6 135749825 135749825 C G AHI1 Silent p.G855G 0.37 TCGA-43-A474-01 6 152679544 152679544 A G SYNE1 Silent p.D3524D 0.37 TCGA-43-A474-01 6 152737886 152737886 T A SYNE1 Missense_Mutation p.S1896C 0.18 possibly_damaging(0.695) TCGA-43-A474-01 6 153042964 153042964 G C MYCT1 Missense_Mutation p.R95P 0.46 deleterious(0) probably_damaging(0.933) TCGA-43-A474-01 6 153078241 153078241 G C VIP Missense_Mutation p.E160Q 0.32 tolerated(0.36) benign(0.008) TCGA-43-A474-01 6 15627647 15627647 G A DTNBP1 Silent p.L94L 0.40 TCGA-43-A474-01 6 161537981 161537981 G T MAP3K4 3'UTR 0.20 TCGA-43-A474-01 6 25820119 25820119 C A SLC17A1 Missense_Mutation p.D78Y 0.29 deleterious(0) probably_damaging(0.914) TCGA-43-A474-01 6 25921513 25921513 C A SLC17A2 Missense_Mutation p.G123V 0.46 deleterious(0) probably_damaging(0.995) TCGA-43-A474-01 6 26385362 26385362 C T BTN2A2 Missense_Mutation p.R72W 0.22 deleterious(0) probably_damaging(0.997) TCGA-43-A474-01 6 27107273 27107273 C A HIST1H4I Missense_Mutation p.F62L 0.35 deleterious(0) possibly_damaging(0.739) TCGA-43-A474-01 6 29394476 29394476 C G OR11A1 Missense_Mutation p.D315H 0.34 deleterious_low_confidence(0.01) benign(0.346) TCGA-43-A474-01 6 29523619 29523619 G T UBD 3'UTR 0.20 TCGA-43-A474-01 6 32134290 32134290 C G EGFL8 Silent p.S39S 0.37 TCGA-43-A474-01 6 43029053 43029053 G T KLC4 Missense_Mutation p.G12C 0.34 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-43-A474-01 6 43476643 43476643 G T LRRC73 Silent p.P96P 0.27 TCGA-43-A474-01 6 576828 576828 G C EXOC2 Nonsense_Mutation p.S416* 0.45 TCGA-43-A474-01 6 75796136 75796136 G A COL12A1 3'UTR 0.24 TCGA-43-A474-01 6 75860947 75860947 T A COL12A1 Missense_Mutation p.T1353S 0.19 benign(0.278) TCGA-43-A474-01 6 88768434 88768434 G T SPACA1 Missense_Mutation p.W123L 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-43-A474-01 7 100086579 100086579 C A NYAP1 Missense_Mutation p.P412H 0.48 deleterious(0) probably_damaging(0.999) TCGA-43-A474-01 7 100369548 100369548 G C ZAN Missense_Mutation p.G1777A 0.33 unknown(0) TCGA-43-A474-01 7 103629641 103629641 C A RELN Missense_Mutation p.V55L 0.33 deleterious(0) benign(0.239) TCGA-43-A474-01 7 107414448 107414448 G A SLC26A3 Missense_Mutation p.P642S 0.34 deleterious(0) probably_damaging(1) TCGA-43-A474-01 7 136848922 136848922 T G hsa-mir-490 Intron 0.42 TCGA-43-A474-01 7 1512774 1512774 G T INTS1 Missense_Mutation p.L2002I 0.23 tolerated(0.07) probably_damaging(0.997) TCGA-43-A474-01 7 154684388 154684388 T A DPP6 3'UTR 0.24 TCGA-43-A474-01 7 154684389 154684389 G T DPP6 3'UTR 0.23 TCGA-43-A474-01 7 19738336 19738336 C A TWISTNB Missense_Mutation p.R207L 0.29 tolerated(0.31) benign(0.001) TCGA-43-A474-01 7 23650822 23650822 T C CCDC126 5'UTR 0.45 TCGA-43-A474-01 7 23827669 23827669 G T STK31 Missense_Mutation p.G853V 0.41 deleterious(0) probably_damaging(1) TCGA-43-A474-01 7 25194740 25194740 G T C7orf31 Missense_Mutation p.T162N 0.25 tolerated(0.8) probably_damaging(0.945) TCGA-43-A474-01 7 27185471 27185471 G A HOXA6 Silent p.L170L 0.39 TCGA-43-A474-01 7 27824920 27824920 G T TAX1BP1 Nonsense_Mutation p.E251* 0.26 TCGA-43-A474-01 7 34118614 34118614 C T BMPER Silent p.D408D 0.08 TCGA-43-A474-01 7 37936584 37936584 C A NME8 Silent p.R553R 0.26 TCGA-43-A474-01 7 38725699 38725699 C A FAM183B 5'UTR 0.33 TCGA-43-A474-01 7 40535932 40535932 G T SUGCT Nonsense_Mutation p.G353* 0.25 TCGA-43-A474-01 7 40535933 40535933 G T SUGCT Missense_Mutation p.G353V 0.25 deleterious(0) probably_damaging(0.94) TCGA-43-A474-01 7 47894523 47894523 A G PKD1L1 Missense_Mutation p.S1606P 0.30 deleterious(0.03) possibly_damaging(0.854) TCGA-43-A474-01 7 57188410 57188410 C A ZNF479 Nonsense_Mutation p.E238* 0.37 TCGA-43-A474-01 7 70886082 70886082 T G WBSCR17 Missense_Mutation p.L318R 0.17 deleterious(0.03) possibly_damaging(0.609) TCGA-43-A474-01 7 72658707 72658707 G A GTF2IRD2P1 RNA 0.35 TCGA-43-A474-01 7 7278246 7278246 T G C1GALT1 Missense_Mutation p.F194C 0.23 deleterious(0) probably_damaging(1) TCGA-43-A474-01 7 80091940 80091940 C G GNAT3 Missense_Mutation p.D200H 0.25 deleterious(0) probably_damaging(1) TCGA-43-A474-01 7 88963703 88963703 C A ZNF804B Silent p.P469P 0.22 TCGA-43-A474-01 7 94539423 94539423 A G PPP1R9A 5'UTR 0.20 TCGA-43-A474-01 7 94918001 94918001 C A PPP1R9A Missense_Mutation p.L1295I 0.31 deleterious(0) probably_damaging(0.999) TCGA-43-A474-01 7 97870190 97870190 C A TECPR1 Silent p.V302V 0.50 TCGA-43-A474-01 7 98591333 98591333 C A TRRAP Silent p.V3326V 0.32 TCGA-43-A474-01 8 110984518 110984518 C A KCNV1 Silent p.L320L 0.40 TCGA-43-A474-01 8 113697836 113697836 G C CSMD3 Missense_Mutation p.L761V 0.60 deleterious(0.04) probably_damaging(0.999) TCGA-43-A474-01 8 117784010 117784010 A G UTP23 Missense_Mutation p.K227E 0.20 tolerated(0.11) benign(0.174) TCGA-43-A474-01 8 133141909 133141909 G C KCNQ3 Missense_Mutation p.T740R 0.66 tolerated(0.33) benign(0.226) TCGA-43-A474-01 8 139190811 139190811 G T FAM135B Silent p.T332T 0.12 TCGA-43-A474-01 8 139190812 139190812 G T FAM135B Missense_Mutation p.T332N 0.12 tolerated(0.07) probably_damaging(0.979) TCGA-43-A474-01 8 139601538 139601538 G A COL22A1 Silent p.F1613F 0.58 TCGA-43-A474-01 8 145154324 145154324 C A SHARPIN Nonsense_Mutation p.E260* 0.13 TCGA-43-A474-01 8 3141715 3141715 G A CSMD1 Silent p.F1368F 0.33 TCGA-43-A474-01 8 56652667 56652667 C A TMEM68 3'UTR 0.25 TCGA-43-A474-01 8 88885563 88885563 C A DCAF4L2 Missense_Mutation p.V213L 0.37 tolerated(0.08) benign(0.043) TCGA-43-A474-01 9 101763185 101763185 T C COL15A1 Silent p.T339T 0.26 TCGA-43-A474-01 9 114172437 114172437 C A KIAA0368 Missense_Mutation p.G990C 0.42 deleterious(0) probably_damaging(0.916) TCGA-43-A474-01 9 116769659 116769659 G - ZNF618 Frame_Shift_Del p.K163Rfs*44 0.29 TCGA-43-A474-01 9 123201936 123201936 C A CDK5RAP2 Missense_Mutation p.D1155Y 0.20 deleterious(0) possibly_damaging(0.823) TCGA-43-A474-01 9 125140248 125140248 G A PTGS1 Silent p.Q55Q 0.36 TCGA-43-A474-01 9 132638413 132638413 G A USP20 Missense_Mutation p.G769R 0.42 tolerated(0.09) probably_damaging(0.981) TCGA-43-A474-01 9 136324131 136324131 C A ADAMTS13 Missense_Mutation p.F1371L 0.09 deleterious(0.01) benign(0.216) TCGA-43-A474-01 9 140509394 140509394 G T ARRDC1 Silent p.V393V 0.16 TCGA-43-A474-01 9 37015093 37015093 C A PAX5 Missense_Mutation p.R104L 0.56 deleterious(0.01) possibly_damaging(0.83) TCGA-43-A474-01 9 5358314 5358314 C A PLGRKT Silent p.L123L 0.59 TCGA-43-A474-01 9 73150703 73150703 G T TRPM3 3'UTR 0.19 TCGA-43-A474-01 9 77377202 77377202 T G TRPM6 Missense_Mutation p.E1462A 0.13 deleterious_low_confidence(0.04) benign(0.303) TCGA-43-A474-01 9 95993365 95993365 A T WNK2 Missense_Mutation p.R350S 0.25 unknown(0) TCGA-43-A474-01 X 104512132 104512132 A T IL1RAPL2 Missense_Mutation p.Q202L 0.87 tolerated(0.6) benign(0.069) TCGA-43-A474-01 X 105865980 105865980 G A CXorf57 Missense_Mutation p.R248Q 0.80 tolerated(0.06) benign(0.048) TCGA-43-A474-01 X 106396409 106396409 C T NUP62CL Missense_Mutation p.V175M 0.64 tolerated_low_confidence(0.11) benign(0.187) TCGA-43-A474-01 X 109695386 109695386 C A RGAG1 Missense_Mutation p.P514Q 0.69 tolerated(0.42) possibly_damaging(0.447) TCGA-43-A474-01 X 110491858 110491858 G A CAPN6 Nonsense_Mutation p.Q475* 0.63 TCGA-43-A474-01 X 11157163 11157163 G A ARHGAP6 Silent p.A915A 0.78 TCGA-43-A474-01 X 115569030 115569030 A G SLC6A14 Missense_Mutation p.K41E 0.38 deleterious(0.03) benign(0.217) TCGA-43-A474-01 X 134989516 134989516 G T SAGE1 Missense_Mutation p.D308Y 0.66 deleterious(0.01) benign(0.018) TCGA-43-A474-01 X 13773322 13773322 G T OFD1 Missense_Mutation p.E394D 0.75 deleterious(0.01) probably_damaging(0.93) TCGA-43-A474-01 X 140996171 140996171 T C MAGEC1 Missense_Mutation p.M994T 0.71 deleterious(0.02) unknown(0) TCGA-43-A474-01 X 26158083 26158083 G A MAGEB18 Missense_Mutation p.M327I 0.60 tolerated(0.4) benign(0.002) TCGA-43-A474-01 X 31496298 31496298 C G DMD Missense_Mutation p.E2954D 0.67 benign(0.388) TCGA-43-A474-01 X 3228892 3228892 G T MXRA5 Missense_Mutation p.T2451N 0.44 tolerated(0.06) probably_damaging(0.975) TCGA-43-A474-01 X 32360390 32360390 G T DMD Silent p.R1917R 0.67 TCGA-43-A474-01 X 37026537 37026537 G A FAM47C Silent p.T18T 0.88 TCGA-43-A474-01 X 44949073 44949073 C T KDM6A Nonsense_Mutation p.Q1212* 0.82 TCGA-43-A474-01 X 52891589 52891589 T C XAGE3 3'UTR 0.50 TCGA-43-A474-01 X 65393458 65393458 G T HEPH Missense_Mutation p.G201V 0.56 deleterious(0.01) probably_damaging(0.959) TCGA-43-A474-01 X 76918980 76918980 T A ATRX Missense_Mutation p.R1337S 0.81 benign(0.26) TCGA-43-A474-01 X 86872981 86872981 A T KLHL4 Silent p.A258A 0.54 TCGA-43-A474-01 X 86919802 86919802 C T KLHL4 Missense_Mutation p.P655L 0.63 deleterious(0) probably_damaging(0.944) TCGA-43-A474-01 X 9900373 9900373 G T SHROOM2 Missense_Mutation p.R1017L 0.46 tolerated(0.27) possibly_damaging(0.874) TCGA-43-A474-01 X 99551361 99551361 C G PCDH19 Missense_Mutation p.V1121L 0.69 tolerated_low_confidence(0.05) benign(0.027) TCGA-43-A475-01 10 104173527 104173527 T A PSD Missense_Mutation p.S518C 0.24 deleterious(0.01) probably_damaging(0.985) TCGA-43-A475-01 10 126395243 126395243 C T FAM53B Missense_Mutation p.A14T 0.29 deleterious(0.04) benign(0.008) TCGA-43-A475-01 10 129536884 129536884 C G FOXI2 Silent p.A204A 0.17 TCGA-43-A475-01 10 17032358 17032358 G T CUBN Nonsense_Mutation p.S1442* 0.12 TCGA-43-A475-01 10 27066036 27066036 A G ABI1 Silent p.P140P 0.31 TCGA-43-A475-01 10 33209192 33209192 T C ITGB1 Missense_Mutation p.N417S 0.39 tolerated(0.06) possibly_damaging(0.874) TCGA-43-A475-01 10 63959551 63959551 A C RTKN2 Missense_Mutation p.F419C 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-43-A475-01 10 68040247 68040247 C T CTNNA3 Missense_Mutation p.C622Y 0.05 tolerated(0.06) unknown(0) TCGA-43-A475-01 10 70182463 70182463 C A DNA2 Missense_Mutation p.R884L 0.38 tolerated(0.06) benign(0.047) TCGA-43-A475-01 10 72541582 72541582 G C TBATA Missense_Mutation p.H84Q 0.46 tolerated(0.15) benign(0.247) TCGA-43-A475-01 11 123596884 123596884 C G ZNF202 Missense_Mutation p.V590L 0.35 tolerated(0.08) benign(0.101) TCGA-43-A475-01 11 123810678 123810678 G T OR4D5 Missense_Mutation p.A119S 0.28 deleterious(0) benign(0.223) TCGA-43-A475-01 11 123900464 123900464 G T OR10G8 Silent p.L45L 0.29 TCGA-43-A475-01 11 123900465 123900465 G T OR10G8 Missense_Mutation p.V46L 0.29 deleterious(0.02) benign(0.02) TCGA-43-A475-01 11 1861658 1861658 G C TNNI2 Missense_Mutation p.R14P 0.47 deleterious(0) probably_damaging(1) TCGA-43-A475-01 11 55065022 55065022 A G TRIM51HP RNA 0.26 TCGA-43-A475-01 11 55607076 55607076 G T OR5D16 Silent p.V283V 0.30 TCGA-43-A475-01 11 55658716 55658716 G - TRIM51 Frame_Shift_Del p.G323Efs*49 0.23 TCGA-43-A475-01 11 57971393 57971393 A T OR1S2 Silent p.I87I 0.29 TCGA-43-A475-01 11 62550212 62550212 C T TAF6L Missense_Mutation p.S292F 0.34 deleterious(0) possibly_damaging(0.722) TCGA-43-A475-01 11 6953595 6953595 G - ZNF215 Frame_Shift_Del p.W31Cfs*27 0.28 TCGA-43-A475-01 11 71821156 71821156 G A ANAPC15 Missense_Mutation p.P99L 0.17 tolerated(0.06) benign(0.066) TCGA-43-A475-01 11 74617345 74617345 C T XRRA1 Silent p.E306E 0.35 TCGA-43-A475-01 11 82878329 82878329 C G PCF11 Missense_Mutation p.S660R 0.25 tolerated(0.06) possibly_damaging(0.764) TCGA-43-A475-01 12 110488961 110488961 C T C12orf76 Intron 0.38 TCGA-43-A475-01 12 120222128 120222128 A G CIT Intron 0.12 TCGA-43-A475-01 12 124856701 124856701 T A NCOR2 Nonsense_Mutation p.K892* 0.05 TCGA-43-A475-01 12 131359098 131359098 T C RAN Silent p.C85C 0.10 TCGA-43-A475-01 12 133331669 133331669 C G ANKLE2 Missense_Mutation p.D78H 0.03 deleterious(0) probably_damaging(1) TCGA-43-A475-01 12 21325699 21325699 G T SLCO1B1 Missense_Mutation p.G67V 0.26 deleterious(0) probably_damaging(1) TCGA-43-A475-01 12 2613703 2613703 C T CACNA1C Intron 0.18 TCGA-43-A475-01 12 45742404 45742404 C T ANO6 Missense_Mutation p.P267L 0.29 deleterious(0) probably_damaging(0.988) TCGA-43-A475-01 12 57135289 57135289 C A PRIM1 Silent p.R304R 0.26 TCGA-43-A475-01 12 57135290 57135290 C A PRIM1 Missense_Mutation p.R304L 0.26 deleterious(0.02) probably_damaging(0.994) TCGA-43-A475-01 12 57648750 57648750 C A R3HDM2 Missense_Mutation p.D913Y 0.13 deleterious(0) possibly_damaging(0.629) TCGA-43-A475-01 12 6638006 6638006 A G NCAPD2 Missense_Mutation p.N1154S 0.25 tolerated(0.61) benign(0.021) TCGA-43-A475-01 12 81101904 81101904 A T MYF6 Missense_Mutation p.S136C 0.36 deleterious(0) probably_damaging(0.998) TCGA-43-A475-01 13 28014329 28014329 A G MTIF3 Missense_Mutation p.V86A 0.04 deleterious(0) benign(0.09) TCGA-43-A475-01 13 32911890 32911890 C T BRCA2 Missense_Mutation p.P1133L 0.29 deleterious(0.01) benign(0.272) TCGA-43-A475-01 13 36229121 36229121 G T NBEA Missense_Mutation p.S2701I 0.33 deleterious(0) possibly_damaging(0.871) TCGA-43-A475-01 13 64321103 64321103 G T AL445989.1 Missense_Mutation p.G57V 0.22 unknown(0) TCGA-43-A475-01 13 95273357 95273357 G C GPR180 Missense_Mutation p.Q254H 0.32 tolerated(0.17) benign(0.015) TCGA-43-A475-01 14 103596462 103596462 G C TNFAIP2 Splice_Site p.X366_splice 0.14 TCGA-43-A475-01 14 20388955 20388955 G T OR4K5 Nonsense_Mutation p.G64* 0.12 TCGA-43-A475-01 14 20502252 20502252 T A OR4K13 Silent p.I222I 0.44 TCGA-43-A475-01 14 20612531 20612531 G T OR4N5 Missense_Mutation p.G213C 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-43-A475-01 14 34985493 34985494 - A EAPP 3'UTR 0.22 TCGA-43-A475-01 14 45693920 45693920 C G MIS18BP1 Missense_Mutation p.D624H 0.05 deleterious(0) probably_damaging(0.997) TCGA-43-A475-01 14 72169098 72169098 G T SIPA1L1 Silent p.G1174G 0.18 TCGA-43-A475-01 14 77948857 77948857 C A ISM2 Missense_Mutation p.A261S 0.23 tolerated(0.23) benign(0.003) TCGA-43-A475-01 14 86088173 86088173 G A FLRT2 Missense_Mutation p.M105I 0.17 tolerated(1) benign(0.002) TCGA-43-A475-01 14 90770314 90770314 C A NRDE2 Missense_Mutation p.D324Y 0.23 deleterious(0) probably_damaging(1) TCGA-43-A475-01 14 91647674 91647674 C T C14orf159 Missense_Mutation p.A292V 0.12 tolerated(0.59) benign(0.048) TCGA-43-A475-01 14 95058568 95058568 C T SERPINA5 Missense_Mutation p.R405C 0.17 deleterious(0.01) possibly_damaging(0.889) TCGA-43-A475-01 15 25223018 25223018 C A SNRPN Silent p.R172R 0.27 TCGA-43-A475-01 15 28459798 28459798 C A HERC2 Intron 0.11 TCGA-43-A475-01 15 33256309 33256309 T - FMN1 Frame_Shift_Del p.K823Rfs*17 0.23 TCGA-43-A475-01 15 40599884 40599884 G T PLCB2 5'UTR 0.19 TCGA-43-A475-01 15 42113178 42113178 A C MAPKBP1 Missense_Mutation p.Q883P 0.22 tolerated(0.17) benign(0.159) TCGA-43-A475-01 15 48063818 48063818 C T SEMA6D Missense_Mutation p.H1020Y 0.26 tolerated(0.06) possibly_damaging(0.487) TCGA-43-A475-01 15 48551507 48551507 T C SLC12A1 Missense_Mutation p.V718A 0.34 tolerated(0.25) benign(0.045) TCGA-43-A475-01 15 62210451 62210451 T C VPS13C Silent p.K2548K 0.27 TCGA-43-A475-01 15 78841246 78841246 G A PSMA4 Missense_Mutation p.R249H 0.18 tolerated(0.1) unknown(0) TCGA-43-A475-01 15 86077022 86077022 A G AKAP13 Missense_Mutation p.N130S 0.23 deleterious(0.01) possibly_damaging(0.54) TCGA-43-A475-01 16 1825059 1825059 C T EME2 Silent p.H165H 0.22 TCGA-43-A475-01 16 20489980 20489980 G T ACSM2A Missense_Mutation p.G421V 0.35 deleterious(0.05) probably_damaging(1) TCGA-43-A475-01 16 21136675 21136675 C T DNAH3 Missense_Mutation p.A409T 0.13 tolerated(0.27) benign(0.052) TCGA-43-A475-01 16 27489814 27489814 G T GTF3C1 Missense_Mutation p.T1412N 0.30 tolerated(0.51) benign(0.003) TCGA-43-A475-01 16 27720182 27720182 G C KIAA0556 Missense_Mutation p.D516H 0.18 deleterious(0) probably_damaging(0.994) TCGA-43-A475-01 16 2819161 2819163 TCT - SRRM2 In_Frame_Del p.S2648del 0.44 TCGA-43-A475-01 16 48175176 48175176 G T ABCC12 Missense_Mutation p.R122S 0.48 deleterious(0) possibly_damaging(0.676) TCGA-43-A475-01 16 48264403 48264403 A G ABCC11 Missense_Mutation p.W61R 0.11 tolerated(0.38) benign(0.001) TCGA-43-A475-01 16 48265785 48265785 G A ABCC11 Silent p.L16L 0.05 TCGA-43-A475-01 16 55706032 55706032 G A SLC6A2 Missense_Mutation p.G197S 0.06 tolerated(0.8) benign(0.028) TCGA-43-A475-01 17 10350342 10350342 A C MYH4 Silent p.L1719L 0.22 TCGA-43-A475-01 17 10440767 10440767 C A MYH2 Silent p.L560L 0.21 TCGA-43-A475-01 17 34233652 34233652 C A AC015849.16 RNA 0.33 TCGA-43-A475-01 17 35295495 35295495 A G LHX1 Translation_Start_Site p.M1? 0.09 tolerated(0.07) benign(0.298) TCGA-43-A475-01 17 35872822 35872822 C T DUSP14 Missense_Mutation p.P150S 0.35 deleterious(0) probably_damaging(1) TCGA-43-A475-01 17 46423361 46423361 G A SKAP1 Silent p.D62D 0.22 TCGA-43-A475-01 17 59560695 59560695 G T TBX4 Missense_Mutation p.G486W 0.29 deleterious_low_confidence(0) possibly_damaging(0.711) TCGA-43-A475-01 17 5984184 5984184 G T WSCD1 Missense_Mutation p.S69I 0.16 tolerated(0.19) benign(0.096) TCGA-43-A475-01 17 62028926 62028926 G A SCN4A Missense_Mutation p.P904L 0.21 tolerated(0.07) benign(0.063) TCGA-43-A475-01 17 7294063 7294063 C A TMEM256-PLSCR3 Missense_Mutation p.G241W 0.16 deleterious(0) probably_damaging(0.999) TCGA-43-A475-01 17 7578461 7578461 C A TP53 Missense_Mutation p.V157F 0.23 deleterious(0) probably_damaging(0.997) TCGA-43-A475-01 17 79662822 79662822 T G HGS Missense_Mutation p.F396V 0.10 tolerated(0.09) benign(0.01) TCGA-43-A475-01 18 29848625 29848625 T A GAREM Missense_Mutation p.S614C 0.41 deleterious(0.01) possibly_damaging(0.827) TCGA-43-A475-01 18 31432914 31432914 T A NOL4 Silent p.P603P 0.14 TCGA-43-A475-01 18 3582079 3582079 T C DLGAP1 Missense_Mutation p.S587G 0.21 tolerated(0.27) probably_damaging(0.986) TCGA-43-A475-01 18 5891751 5891751 G T TMEM200C Missense_Mutation p.S104R 0.25 tolerated(0.31) benign(0.043) TCGA-43-A475-01 18 61306554 61306554 C G SERPINB4 Missense_Mutation p.Q211H 0.17 tolerated(0.07) benign(0.063) TCGA-43-A475-01 18 70461622 70461622 G C NETO1 Missense_Mutation p.L163V 0.13 tolerated(0.15) benign(0.176) TCGA-43-A475-01 18 74154155 74154155 T A ZNF516 Nonsense_Mutation p.K286* 0.10 TCGA-43-A475-01 18 8296438 8296438 G A PTPRM Missense_Mutation p.G943R 0.28 deleterious(0) probably_damaging(0.99) TCGA-43-A475-01 19 11287281 11287281 G A KANK2 Missense_Mutation p.S586L 0.05 deleterious(0.03) benign(0.22) TCGA-43-A475-01 19 11537389 11537389 G C CCDC151 Missense_Mutation p.D239E 0.17 tolerated(1) benign(0.02) TCGA-43-A475-01 19 11725414 11725414 A T ZNF627 Nonsense_Mutation p.K26* 0.39 TCGA-43-A475-01 19 13879798 13879798 C T MRI1 Silent p.I295I 0.15 TCGA-43-A475-01 19 14991470 14991470 C A OR7A17 Missense_Mutation p.G233V 0.13 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-43-A475-01 19 20295163 20295163 A G ZNF486 Splice_Site p.X11_splice 0.28 TCGA-43-A475-01 19 43093112 43093112 G T CEACAM8 Missense_Mutation p.A261E 0.30 deleterious(0) possibly_damaging(0.853) TCGA-43-A475-01 19 4310499 4310499 A G FSD1 Silent p.L132L 0.28 TCGA-43-A475-01 19 49362248 49362248 G A PLEKHA4 Missense_Mutation p.P281S 0.27 deleterious(0.04) possibly_damaging(0.78) TCGA-43-A475-01 19 49547427 49547427 G C CGB5 5'UTR 0.03 TCGA-43-A475-01 19 53994248 53994248 G A ZNF813 Silent p.R254R 0.25 TCGA-43-A475-01 19 54314356 54314356 G T NLRP12 Missense_Mutation p.T186N 0.19 tolerated(0.14) benign(0.215) TCGA-43-A475-01 19 54799996 54799996 T A LILRA3 3'UTR 0.18 TCGA-43-A475-01 19 55816697 55816697 G A BRSK1 Missense_Mutation p.A576T 0.24 tolerated(0.07) benign(0.259) TCGA-43-A475-01 19 56423931 56423931 G C NLRP13 Missense_Mutation p.L418V 0.10 tolerated(0.07) probably_damaging(0.912) TCGA-43-A475-01 1 117560965 117560965 T C CD101 Silent p.T600T 0.13 TCGA-43-A475-01 1 12302643 12302643 A T VPS13D Missense_Mutation p.K57N 0.35 probably_damaging(0.978) TCGA-43-A475-01 1 153657538 153657538 G T NPR1 Missense_Mutation p.G528V 0.18 deleterious(0) probably_damaging(0.971) TCGA-43-A475-01 1 153991471 153991471 T A NUP210L Missense_Mutation p.R1531W 0.33 deleterious(0.02) probably_damaging(0.991) TCGA-43-A475-01 1 154548541 154548541 G C CHRNB2 3'UTR 0.18 TCGA-43-A475-01 1 155838396 155838396 G C SYT11 Missense_Mutation p.E225D 0.36 deleterious(0) probably_damaging(0.986) TCGA-43-A475-01 1 158637680 158637680 C T SPTA1 Nonsense_Mutation p.W669* 0.14 TCGA-43-A475-01 1 168160660 168160660 G T TIPRL Missense_Mutation p.Q146H 0.14 tolerated(0.12) benign(0.023) TCGA-43-A475-01 1 16893693 16893693 G A NBPF1 Silent p.G940G 0.03 TCGA-43-A475-01 1 175049505 175049505 C A TNN Missense_Mutation p.L331M 0.33 deleterious(0.03) probably_damaging(0.988) TCGA-43-A475-01 1 190234160 190234160 C G BRINP3 Silent p.V151V 0.16 TCGA-43-A475-01 1 200523665 200523665 C A KIF14 Missense_Mutation p.A1500S 0.05 deleterious(0.04) benign(0.303) TCGA-43-A475-01 1 200960141 200960141 C G KIF21B Missense_Mutation p.R864P 0.12 deleterious(0.02) possibly_damaging(0.754) TCGA-43-A475-01 1 216138752 216138752 G A USH2A Missense_Mutation p.R2343W 0.23 probably_damaging(0.955) TCGA-43-A475-01 1 216138753 216138753 G T USH2A Silent p.S2342S 0.25 TCGA-43-A475-01 1 216741359 216741359 G C ESRRG Missense_Mutation p.P229R 0.32 tolerated(0.35) benign(0.249) TCGA-43-A475-01 1 222721310 222721310 C A HHIPL2 Missense_Mutation p.C26F 0.09 tolerated(0.71) benign(0.008) TCGA-43-A475-01 1 224345158 224345158 G T FBXO28 Missense_Mutation p.A273S 0.23 tolerated(0.34) benign(0.368) TCGA-43-A475-01 1 226923853 226923853 C T ITPKB Missense_Mutation p.R436H 0.17 deleterious_low_confidence(0.01) benign(0.27) TCGA-43-A475-01 1 228509902 228509902 G A OBSCN Silent p.L6077L 0.12 TCGA-43-A475-01 1 2334515 2334515 G A RER1 Silent p.K181K 0.30 TCGA-43-A475-01 1 237947444 237947444 C A RYR2 Silent p.R4144R 0.26 TCGA-43-A475-01 1 241798854 241798854 C A CHML Missense_Mutation p.S72I 0.25 tolerated(0.18) benign(0.275) TCGA-43-A475-01 1 247655200 247655200 A G OR2W5 RNA 0.21 TCGA-43-A475-01 1 248224314 248224314 G T OR2L3 Missense_Mutation p.A111S 0.24 tolerated(0.18) benign(0.022) TCGA-43-A475-01 1 28920552 28920552 G T RAB42 Missense_Mutation p.G81C 0.13 deleterious(0) probably_damaging(1) TCGA-43-A475-01 1 63084518 63084518 G C DOCK7 Missense_Mutation p.S514C 0.11 deleterious(0.03) possibly_damaging(0.632) TCGA-43-A475-01 1 77632515 77632515 C - PIGK Frame_Shift_Del p.V126* 0.31 TCGA-43-A475-01 20 10036200 10036200 A G ANKEF1 Silent p.L741L 0.05 TCGA-43-A475-01 20 45131106 45131106 C A ZNF334 Missense_Mutation p.R291I 0.35 deleterious(0) possibly_damaging(0.837) TCGA-43-A475-01 20 61981598 61981598 C T CHRNA4 Missense_Mutation p.E389K 0.45 tolerated(0.13) benign(0.117) TCGA-43-A475-01 21 22656599 22656599 A T NCAM2 Missense_Mutation p.E72D 0.35 tolerated(1) probably_damaging(0.992) TCGA-43-A475-01 21 31744286 31744286 G A KRTAP13-2 Silent p.R82R 0.16 TCGA-43-A475-01 21 31874346 31874346 C A KRTAP19-5 Silent p.L21L 0.14 TCGA-43-A475-01 21 43291626 43291626 C A PRDM15 Missense_Mutation p.R173L 0.10 tolerated_low_confidence(0.17) benign(0) TCGA-43-A475-01 22 23406269 23406269 A G RTDR1 Missense_Mutation p.V155A 0.24 deleterious(0) probably_damaging(0.916) TCGA-43-A475-01 22 33265084 33265084 C T SYN3 Missense_Mutation p.V164I 0.07 tolerated(1) unknown(0) TCGA-43-A475-01 22 44967363 44967363 G T LINC00207 RNA 0.23 TCGA-43-A475-01 22 47089326 47089326 G A CERK Missense_Mutation p.A375V 0.08 tolerated(0.18) benign(0.007) TCGA-43-A475-01 2 128389950 128389950 C G MYO7B Missense_Mutation p.C1767W 0.24 deleterious(0) probably_damaging(0.983) TCGA-43-A475-01 2 131487336 131487336 A T GPR148 Silent p.P204P 0.29 TCGA-43-A475-01 2 141214043 141214043 G A LRP1B Missense_Mutation p.S3315F 0.32 possibly_damaging(0.788) TCGA-43-A475-01 2 144244966 144244966 C A ARHGAP15 Missense_Mutation p.S243Y 0.27 deleterious(0.04) probably_damaging(0.962) TCGA-43-A475-01 2 179437704 179437704 A G TTN Silent p.T24385T 0.32 TCGA-43-A475-01 2 179517260 179517260 C T TTN Missense_Mutation p.A13018T 0.32 TCGA-43-A475-01 2 211082702 211082702 C A ACADL Missense_Mutation p.V120F 0.26 tolerated(0.08) possibly_damaging(0.691) TCGA-43-A475-01 2 216198181 216198181 G C ATIC Splice_Site p.X308_splice 0.13 TCGA-43-A475-01 2 225266217 225266217 T A FAM124B Missense_Mutation p.Q90L 0.40 deleterious(0) possibly_damaging(0.571) TCGA-43-A475-01 2 235961301 235961301 G T SH3BP4 Silent p.R858R 0.50 TCGA-43-A475-01 2 44079562 44079562 C T ABCG8 Missense_Mutation p.R211W 0.33 deleterious(0) probably_damaging(1) TCGA-43-A475-01 2 49190931 49190931 G C FSHR Missense_Mutation p.D343E 0.35 tolerated(0.62) benign(0.003) TCGA-43-A475-01 2 56420477 56420477 G T CCDC85A Missense_Mutation p.S381I 0.34 tolerated_low_confidence(0.15) benign(0.188) TCGA-43-A475-01 2 89385176 89385176 G C IGKV3-15 Missense_Mutation p.P4R 0.19 deleterious(0.04) possibly_damaging(0.876) TCGA-43-A475-01 2 89475928 89475928 C A IGKV2-24 Missense_Mutation p.G82W 0.13 deleterious(0.03) possibly_damaging(0.892) TCGA-43-A475-01 2 99980175 99980175 G C EIF5B Missense_Mutation p.E329D 0.07 benign(0.217) TCGA-43-A475-01 3 112545876 112545876 T A CD200R1L Missense_Mutation p.T215S 0.08 deleterious(0.03) probably_damaging(0.991) TCGA-43-A475-01 3 113172637 113172637 G C SPICE1 Silent p.V606V 0.22 TCGA-43-A475-01 3 119886116 119886116 G A GPR156 Silent p.S736S 0.19 TCGA-43-A475-01 3 120469835 120469835 G C GTF2E1 Missense_Mutation p.D146H 0.32 deleterious(0) probably_damaging(0.963) TCGA-43-A475-01 3 129155737 129155737 A G MBD4 Silent p.C250C 0.12 TCGA-43-A475-01 3 130305437 130305437 G T COL6A6 Missense_Mutation p.G1353V 0.24 deleterious(0) probably_damaging(1) TCGA-43-A475-01 3 137483754 137483754 G T SOX14 Missense_Mutation p.G43V 0.19 deleterious(0) probably_damaging(1) TCGA-43-A475-01 3 156978955 156978955 T G VEPH1 Silent p.R824R 0.08 TCGA-43-A475-01 3 157815814 157815814 C G SHOX2 3'UTR 0.10 TCGA-43-A475-01 3 157817715 157817715 G C SHOX2 Missense_Mutation p.S236R 0.08 deleterious(0) possibly_damaging(0.811) TCGA-43-A475-01 3 16264125 16264125 C A GALNT15 Missense_Mutation p.L545M 0.30 deleterious(0.02) probably_damaging(0.992) TCGA-43-A475-01 3 25775418 25775418 C T NGLY1 Missense_Mutation p.R402K 0.23 deleterious(0) probably_damaging(0.996) TCGA-43-A475-01 3 42244358 42244358 G T TRAK1 Intron 0.33 TCGA-43-A475-01 3 48719552 48719552 C A NCKIPSD Missense_Mutation p.R175L 0.31 deleterious(0.01) benign(0.129) TCGA-43-A475-01 3 58155513 58155513 C G FLNB Missense_Mutation p.S2569R 0.25 tolerated(0.06) possibly_damaging(0.864) TCGA-43-A475-01 4 165961244 165961244 T C TRIM60 Missense_Mutation p.L7P 0.33 deleterious(0) probably_damaging(0.99) TCGA-43-A475-01 4 177113837 177113837 G T SPATA4 Missense_Mutation p.A210E 0.30 tolerated(0.07) possibly_damaging(0.635) TCGA-43-A475-01 4 38829963 38829966 TAAC - TLR6 Frame_Shift_Del p.V377Nfs*12 0.18 TCGA-43-A475-01 4 47548644 47548644 G T ATP10D Missense_Mutation p.R467M 0.28 deleterious(0.01) possibly_damaging(0.653) TCGA-43-A475-01 4 69696584 69696584 G A UGT2B10 Missense_Mutation p.G525E 0.25 tolerated(0.75) benign(0.004) TCGA-43-A475-01 4 88767342 88767342 G A MEPE Missense_Mutation p.R441H 0.26 tolerated(1) benign(0.004) TCGA-43-A475-01 5 118454585 118454585 A G DMXL1 Silent p.P273P 0.33 TCGA-43-A475-01 5 1334415 1334415 C A CLPTM1L Missense_Mutation p.A294S 0.10 tolerated(0.34) benign(0.175) TCGA-43-A475-01 5 140209932 140209932 G A PCDHA6 Silent p.Q752Q 0.35 TCGA-43-A475-01 5 140581048 140581048 C T PCDHB11 Silent p.N567N 0.33 TCGA-43-A475-01 5 140739989 140739990 - C PCDHGB2 Frame_Shift_Ins p.G97Rfs*15 0.23 TCGA-43-A475-01 5 146236146 146236146 C T PPP2R2B Intron 0.38 TCGA-43-A475-01 5 149497369 149497369 T G PDGFRB Silent p.P983P 0.08 TCGA-43-A475-01 5 154396212 154396212 G C KIF4B Silent p.V931V 0.36 TCGA-43-A475-01 5 156589729 156589729 C A FAM71B Missense_Mutation p.G516V 0.29 deleterious(0.01) possibly_damaging(0.77) TCGA-43-A475-01 5 15928589 15928589 C G FBXL7 Missense_Mutation p.L240V 0.31 tolerated(0.07) benign(0.082) TCGA-43-A475-01 5 161580226 161580226 G T GABRG2 Missense_Mutation p.C467F 0.26 deleterious(0) probably_damaging(0.968) TCGA-43-A475-01 5 176938888 176938888 C A DDX41 Silent p.R591R 0.26 TCGA-43-A475-01 5 176938889 176938889 C A DDX41 Missense_Mutation p.R591L 0.26 deleterious(0.01) benign(0.415) TCGA-43-A475-01 5 176952198 176952198 C G FAM193B Missense_Mutation p.E428D 0.19 tolerated(0.21) probably_damaging(0.98) TCGA-43-A475-01 5 31983524 31983524 G T PDZD2 Missense_Mutation p.S247I 0.13 tolerated(0.26) benign(0.003) TCGA-43-A475-01 5 33624344 33624344 T A ADAMTS12 Missense_Mutation p.E712V 0.34 deleterious(0) probably_damaging(0.965) TCGA-43-A475-01 5 33937145 33937145 G T RXFP3 Silent p.L100L 0.14 TCGA-43-A475-01 5 35857131 35857131 G C IL7R Missense_Mutation p.V18L 0.20 tolerated(0.08) benign(0.081) TCGA-43-A475-01 5 35988586 35988586 A T UGT3A1 Silent p.T54T 0.25 TCGA-43-A475-01 5 41018861 41018861 G T MROH2B Missense_Mutation p.L869I 0.23 deleterious(0.01) probably_damaging(0.977) TCGA-43-A475-01 5 76932767 76932767 G A OTP Missense_Mutation p.T109M 0.17 deleterious(0) probably_damaging(1) TCGA-43-A475-01 6 121768246 121768246 G A GJA1 Missense_Mutation p.V85M 0.29 deleterious(0) probably_damaging(1) TCGA-43-A475-01 6 132206149 132206149 C T ENPP1 Missense_Mutation p.P797L 0.40 deleterious(0) probably_damaging(1) TCGA-43-A475-01 6 142737008 142737008 C T GPR126 Silent p.F915F 0.30 TCGA-43-A475-01 6 154489161 154489161 C A IPCEF1 Missense_Mutation p.R333L 0.29 deleterious(0) probably_damaging(0.993) TCGA-43-A475-01 6 160952803 160952803 T A LPA Silent p.S2027S 0.36 TCGA-43-A475-01 6 167550581 167550581 G A CCR6 Missense_Mutation p.C288Y 0.34 deleterious(0) probably_damaging(1) TCGA-43-A475-01 6 170626902 170626902 C A FAM120B Silent p.R142R 0.06 TCGA-43-A475-01 6 26250717 26250717 G T HIST1H3F Silent p.P39P 0.21 TCGA-43-A475-01 6 28228020 28228020 G C NKAPL Missense_Mutation p.E291Q 0.28 deleterious(0.01) probably_damaging(0.948) TCGA-43-A475-01 6 30619138 30619138 G A C6orf136 Missense_Mutation p.R401H 0.20 deleterious(0.03) possibly_damaging(0.817) TCGA-43-A475-01 7 100246365 100246365 G T ACTL6B Nonsense_Mutation p.Y183* 0.18 TCGA-43-A475-01 7 100853684 100853684 C A PLOD3 Silent p.R514R 0.19 TCGA-43-A475-01 7 107591759 107591759 C - LAMB1 Frame_Shift_Del p.Q1102Sfs*87 0.10 TCGA-43-A475-01 7 11485733 11485733 C A THSD7A Missense_Mutation p.D1007Y 0.33 deleterious(0) probably_damaging(0.996) TCGA-43-A475-01 7 140501361 140501361 C A BRAF Splice_Site p.X238_splice 0.32 TCGA-43-A475-01 7 141722149 141722149 T C MGAM Silent p.Y264Y 0.13 TCGA-43-A475-01 7 142045782 142045782 G T TRBV4-2 Missense_Mutation p.D104Y 0.10 deleterious(0) probably_damaging(0.998) TCGA-43-A475-01 7 149499022 149499022 G A SSPO RNA 0.20 TCGA-43-A475-01 7 26224191 26224191 C G NFE2L3 Missense_Mutation p.I291M 0.12 tolerated(0.12) benign(0.014) TCGA-43-A475-01 7 48452066 48452066 C A ABCA13 Silent p.T4115T 0.23 TCGA-43-A475-01 7 56149333 56149333 C T PHKG1 Missense_Mutation p.G335E 0.12 tolerated(0.12) possibly_damaging(0.767) TCGA-43-A475-01 7 57188527 57188527 G T ZNF479 Missense_Mutation p.H199N 0.15 tolerated(0.15) possibly_damaging(0.753) TCGA-43-A475-01 7 71177176 71177176 T C WBSCR17 3'UTR 0.18 TCGA-43-A475-01 7 73008679 73008679 C - MLXIPL Frame_Shift_Del p.A789Qfs*28 0.14 TCGA-43-A475-01 7 77558580 77558580 A C PHTF2 Missense_Mutation p.D391A 0.19 deleterious(0.01) benign(0.287) TCGA-43-A475-01 7 82785150 82785150 A G PCLO Silent p.H269H 0.20 TCGA-43-A475-01 7 912949 912949 A C SUN1 Missense_Mutation p.H780P 0.26 deleterious(0) probably_damaging(0.999) TCGA-43-A475-01 7 94919455 94919455 A C PPP1R9A Missense_Mutation p.K1322T 0.23 deleterious(0) probably_damaging(1) TCGA-43-A475-01 7 94993312 94993312 G A PON3 Silent p.T186T 0.24 TCGA-43-A475-01 8 107754456 107754456 G C OXR1 Missense_Mutation p.G776R 0.30 deleterious(0) probably_damaging(1) TCGA-43-A475-01 8 125132058 125132058 C A FER1L6 3'UTR 0.33 TCGA-43-A475-01 8 139163918 139163918 C A FAM135B Missense_Mutation p.V934L 0.37 deleterious_low_confidence(0.01) benign(0.092) TCGA-43-A475-01 8 14022088 14022088 C T SGCZ Splice_Site p.X183_splice 0.35 TCGA-43-A475-01 8 145101732 145101732 G A SPATC1 Missense_Mutation p.V551M 0.12 tolerated(0.34) benign(0.018) TCGA-43-A475-01 8 21849467 21849467 C T XPO7 Silent p.F710F 0.15 TCGA-43-A475-01 8 48874232 48874232 A G MCM4 Missense_Mutation p.H76R 0.25 tolerated(0.55) benign(0) TCGA-43-A475-01 8 51314806 51314806 C A SNTG1 Missense_Mutation p.Q22K 0.13 tolerated(0.53) benign(0.019) TCGA-43-A475-01 8 56717584 56717584 C A TGS1 Missense_Mutation p.T711K 0.10 deleterious(0) possibly_damaging(0.631) TCGA-43-A475-01 8 61754536 61754536 G T CHD7 Missense_Mutation p.R1592L 0.38 probably_damaging(0.991) TCGA-43-A475-01 9 107289455 107289455 G A OR13C4 Silent p.F12F 0.14 TCGA-43-A475-01 9 108468028 108468028 C G TMEM38B Nonsense_Mutation p.S88* 0.10 TCGA-43-A475-01 9 124103469 124103469 T A STOM 3'UTR 0.16 TCGA-43-A475-01 9 125921414 125921414 G A STRBP Nonsense_Mutation p.R266* 0.16 TCGA-43-A475-01 9 129643125 129643125 G T ZBTB34 Missense_Mutation p.A479S 0.21 tolerated_low_confidence(0.28) benign(0.003) TCGA-43-A475-01 9 130507042 130507042 G T SH2D3C Missense_Mutation p.P534H 0.31 tolerated(0.11) benign(0.003) TCGA-43-A475-01 9 130674926 130674926 C A ST6GALNAC4 Missense_Mutation p.V78L 0.25 benign(0.035) TCGA-43-A475-01 9 20363381 20363381 G T MLLT3 Intron 0.33 TCGA-43-A475-01 9 21974721 21974721 C - CDKN2A Frame_Shift_Del p.A36Rfs*17 0.27 TCGA-43-A475-01 9 77257691 77257691 C A RORB Missense_Mutation p.N199K 0.11 tolerated(0.84) benign(0.012) TCGA-43-A475-01 9 79324790 79324790 C G PRUNE2 Missense_Mutation p.W800C 0.31 deleterious(0) probably_damaging(0.999) TCGA-43-A475-01 9 88938465 88938465 C G ZCCHC6 Missense_Mutation p.D734H 0.28 tolerated_low_confidence(0.11) possibly_damaging(0.572) TCGA-43-A475-01 X 10153127 10153127 G C CLCN4 Missense_Mutation p.E19Q 0.11 tolerated(0.05) benign(0.086) TCGA-43-A475-01 X 101911123 101911123 C G GPRASP1 Nonsense_Mutation p.S761* 0.12 TCGA-43-A475-01 X 102885085 102885085 G T TCEAL1 Missense_Mutation p.G81W 0.13 deleterious_low_confidence(0.01) benign(0.077) TCGA-43-A475-01 X 106066473 106066473 T A TBC1D8B Missense_Mutation p.W202R 0.09 deleterious(0) probably_damaging(1) TCGA-43-A475-01 X 106418409 106418409 C A NUP62CL 5'UTR 0.16 TCGA-43-A475-01 X 107170211 107170211 G A MID2 Missense_Mutation p.A706T 0.14 tolerated(0.26) benign(0.101) TCGA-43-A475-01 X 107866052 107866052 C G COL4A5 Missense_Mutation p.P972A 0.08 unknown(0) TCGA-43-A475-01 X 107978371 107978371 G T IRS4 Missense_Mutation p.P402T 0.12 deleterious(0.02) possibly_damaging(0.905) TCGA-43-A475-01 X 108785847 108785847 C A NXT2 Missense_Mutation p.S175Y 0.13 deleterious(0.01) possibly_damaging(0.847) TCGA-43-A475-01 X 109695797 109695797 G T RGAG1 Missense_Mutation p.G651V 0.15 deleterious(0.01) probably_damaging(0.988) TCGA-43-A475-01 X 11200237 11200237 G T ARHGAP6 Silent p.G425G 0.10 TCGA-43-A475-01 X 117695429 117695429 A T DOCK11 Silent p.S214S 0.15 TCGA-43-A475-01 X 117900920 117900920 G T IL13RA1 Missense_Mutation p.W330C 0.15 deleterious(0) probably_damaging(1) TCGA-43-A475-01 X 118723550 118723550 T G NKRF Missense_Mutation p.Y628S 0.09 deleterious(0) probably_damaging(0.954) TCGA-43-A475-01 X 120009201 120009201 C A CT47B1 Missense_Mutation p.L108F 0.23 tolerated(0.09) possibly_damaging(0.883) TCGA-43-A475-01 X 123025126 123025126 T A XIAP Missense_Mutation p.I339K 0.16 deleterious(0) probably_damaging(0.961) TCGA-43-A475-01 X 123663732 123663732 A T TENM1 Missense_Mutation p.I918N 0.15 deleterious(0) possibly_damaging(0.733) TCGA-43-A475-01 X 123805668 123805668 G T TENM1 Missense_Mutation p.L345M 0.14 deleterious(0) probably_damaging(0.991) TCGA-43-A475-01 X 125685833 125685833 G A DCAF12L1 Silent p.I253I 0.21 TCGA-43-A475-01 X 133527611 133527611 T C PHF6 Silent p.C107C 0.10 TCGA-43-A475-01 X 135314201 135314201 T C MAP7D3 Silent p.A305A 0.03 TCGA-43-A475-01 X 135428017 135428017 G T GPR112 Missense_Mutation p.D718Y 0.17 deleterious(0) possibly_damaging(0.65) TCGA-43-A475-01 X 13781914 13781914 G T OFD1 Missense_Mutation p.G847W 0.25 deleterious(0) probably_damaging(0.999) TCGA-43-A475-01 X 140995522 140995522 C G MAGEC1 Missense_Mutation p.P778A 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.539) TCGA-43-A475-01 X 141290724 141290724 G T MAGEC2 Silent p.T350T 0.21 TCGA-43-A475-01 X 142967509 142967509 C G UBE2NL Missense_Mutation p.R103G 0.12 deleterious(0.01) possibly_damaging(0.812) TCGA-43-A475-01 X 1475148 1475150 TAA - IL3RA In_Frame_Del p.N218del 0.22 TCGA-43-A475-01 X 150891116 150891116 G A FATE1 Missense_Mutation p.R146Q 0.11 tolerated(0.61) benign(0.06) TCGA-43-A475-01 X 152612885 152612885 G T ZNF275 Missense_Mutation p.D248Y 0.09 tolerated(0.09) probably_damaging(0.973) TCGA-43-A475-01 X 152915761 152915761 G A DUSP9 3'UTR 0.10 TCGA-43-A475-01 X 153696668 153696668 C - PLXNA3 Frame_Shift_Del p.L1330Cfs*99 0.10 TCGA-43-A475-01 X 15373289 15373289 C A FIGF Missense_Mutation p.Q208H 0.12 tolerated(0.2) benign(0.043) TCGA-43-A475-01 X 154134802 154134802 C - F8 Frame_Shift_Del p.E1756Nfs*16 0.09 TCGA-43-A475-01 X 154250729 154250729 C A F8 Missense_Mutation p.W33C 0.13 deleterious(0) probably_damaging(0.999) TCGA-43-A475-01 X 18198718 18198718 G A BEND2 Silent p.S447S 0.08 TCGA-43-A475-01 X 23019537 23019537 G A DDX53 Missense_Mutation p.A455T 0.10 tolerated(0.64) benign(0.013) TCGA-43-A475-01 X 2408100 2408100 C T ZBED1 Missense_Mutation p.G221S 0.14 tolerated(0.68) benign(0.003) TCGA-43-A475-01 X 27997852 27997852 C A DCAF8L1 Nonsense_Mutation p.E534* 0.13 TCGA-43-A475-01 X 29417280 29417280 G A IL1RAPL1 Silent p.R186R 0.10 TCGA-43-A475-01 X 30269410 30269410 G C MAGEB1 Missense_Mutation p.R267P 0.12 tolerated(0.05) probably_damaging(0.964) TCGA-43-A475-01 X 30872553 30872553 G A TAB3 Missense_Mutation p.P410L 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-43-A475-01 X 3239612 3239612 C A MXRA5 Missense_Mutation p.V1372L 0.13 tolerated(0.5) benign(0) TCGA-43-A475-01 X 34149213 34149213 C T FAM47A Missense_Mutation p.E395K 0.13 tolerated(0.87) possibly_damaging(0.533) TCGA-43-A475-01 X 37029739 37029739 C T FAM47C 3'UTR 0.24 TCGA-43-A475-01 X 41048594 41048594 C T USP9X Silent p.D1281D 0.11 TCGA-43-A475-01 X 48558679 48558679 G T SUV39H1 Missense_Mutation p.K121N 0.29 deleterious(0.02) benign(0.077) TCGA-43-A475-01 X 48758490 48758490 G A PQBP1 Missense_Mutation p.E31K 0.20 tolerated(0.07) benign(0.41) TCGA-43-A475-01 X 50377163 50377163 G A SHROOM4 Missense_Mutation p.T637I 0.14 deleterious(0.05) benign(0.032) TCGA-43-A475-01 X 53244021 53244021 T A KDM5C Silent p.S324S 0.18 TCGA-43-A475-01 X 53579365 53579365 C T HUWE1 Missense_Mutation p.D2930N 0.13 possibly_damaging(0.539) TCGA-43-A475-01 X 54161490 54161490 G T FAM120C Missense_Mutation p.P464T 0.15 tolerated(0.13) possibly_damaging(0.637) TCGA-43-A475-01 X 55514513 55514513 A C USP51 Missense_Mutation p.M287R 0.13 tolerated(0.21) benign(0.223) TCGA-43-A475-01 X 65253520 65253520 G T VSIG4 Missense_Mutation p.R70S 0.34 deleterious(0.03) probably_damaging(0.914) TCGA-43-A475-01 X 65478765 65478765 G T HEPH Missense_Mutation p.G1048C 0.44 deleterious(0) probably_damaging(1) TCGA-43-A475-01 X 67421490 67421490 C A OPHN1 Missense_Mutation p.R332S 0.18 deleterious(0) probably_damaging(0.996) TCGA-43-A475-01 X 70472858 70472858 C A ZMYM3 Missense_Mutation p.G83V 0.17 tolerated_low_confidence(0.14) benign(0.254) TCGA-43-A475-01 X 73963354 73963354 G T KIAA2022 Silent p.P346P 0.15 TCGA-43-A475-01 X 77086343 77086343 C T MAGT1 Missense_Mutation p.M349I 0.14 tolerated(0.14) benign(0.004) TCGA-43-A475-01 X 78216372 78216372 G T P2RY10 Missense_Mutation p.A119S 0.15 deleterious(0) possibly_damaging(0.837) TCGA-43-A475-01 X 79948479 79948479 G T BRWD3 Missense_Mutation p.P1075T 0.18 tolerated(0.07) benign(0.009) TCGA-43-A475-01 X 90691003 90691003 G T PABPC5 Missense_Mutation p.G143C 0.11 deleterious(0) probably_damaging(0.947) TCGA-43-A475-01 X 90691004 90691004 G T PABPC5 Missense_Mutation p.G143V 0.10 deleterious(0.01) benign(0.085) TCGA-43-A56U-01 10 101715196 101715196 C A DNMBP Missense_Mutation p.G679C 0.14 tolerated(0.12) possibly_damaging(0.619) TCGA-43-A56U-01 10 134144966 134144966 C T LRRC27 5'Flank 0.14 TCGA-43-A56U-01 10 135440185 135440185 T A FRG2B Missense_Mutation p.Q21L 0.05 tolerated(0.14) possibly_damaging(0.71) TCGA-43-A56U-01 10 17277852 17277852 C T VIM Silent p.L413L 0.10 TCGA-43-A56U-01 10 26457650 26457650 A T MYO3A Nonsense_Mutation p.K1041* 0.12 TCGA-43-A56U-01 10 43971240 43971240 G A ZNF487 5'UTR 0.09 TCGA-43-A56U-01 10 45430248 45430248 C A TMEM72 Missense_Mutation p.T165K 0.05 deleterious(0) probably_damaging(0.964) TCGA-43-A56U-01 10 70164565 70164565 A T RUFY2 Nonsense_Mutation p.L49* 0.11 TCGA-43-A56U-01 10 75143073 75143073 C G ANXA7 Missense_Mutation p.E282Q 0.11 deleterious(0) probably_damaging(0.998) TCGA-43-A56U-01 11 118390446 118390446 G A KMT2A Missense_Mutation p.E3754K 0.15 probably_damaging(0.991) TCGA-43-A56U-01 11 118967959 118967959 C T DPAGT1 Missense_Mutation p.D352N 0.06 tolerated(0.15) benign(0.023) TCGA-43-A56U-01 11 123777469 123777469 G T OR8D4 Nonsense_Mutation p.E111* 0.09 TCGA-43-A56U-01 11 124440239 124440239 C A OR8A1 Missense_Mutation p.S92Y 0.06 deleterious(0) probably_damaging(0.977) TCGA-43-A56U-01 11 130068294 130068294 C A ST14 Missense_Mutation p.N517K 0.07 tolerated(0.1) benign(0.363) TCGA-43-A56U-01 11 18231758 18231758 C T RP11-113D6.10 3'UTR 0.16 TCGA-43-A56U-01 11 3726559 3726559 C T NUP98 Missense_Mutation p.E985K 0.10 tolerated(0.08) possibly_damaging(0.858) TCGA-43-A56U-01 11 45891899 45891899 G A CRY2 Silent p.L476L 0.09 TCGA-43-A56U-01 11 47819532 47819532 C G NUP160 Missense_Mutation p.E1061Q 0.11 deleterious(0) probably_damaging(0.946) TCGA-43-A56U-01 11 55587473 55587473 G T OR5D18 Missense_Mutation p.R123L 0.05 deleterious(0.02) benign(0.246) TCGA-43-A56U-01 11 62293114 62293114 G C AHNAK Silent p.V2925V 0.05 TCGA-43-A56U-01 11 82880514 82880514 C G PCF11 Missense_Mutation p.P1046R 0.15 deleterious(0.04) possibly_damaging(0.878) TCGA-43-A56U-01 12 110340988 110340988 G C TCHP Missense_Mutation p.E53Q 0.11 tolerated(0.34) benign(0.007) TCGA-43-A56U-01 12 110471694 110471694 C G ANKRD13A Missense_Mutation p.Q481E 0.06 tolerated(0.39) benign(0.108) TCGA-43-A56U-01 12 112451218 112451218 G C ERP29 5'UTR 0.09 TCGA-43-A56U-01 12 117013835 117013835 A T MAP1LC3B2 Nonsense_Mutation p.K30* 0.08 TCGA-43-A56U-01 12 120565618 120565618 T C GCN1L1 3'UTR 0.07 TCGA-43-A56U-01 12 130926787 130926787 G A RIMBP2 Silent p.L353L 0.10 TCGA-43-A56U-01 12 13241804 13241804 G T GSG1 Missense_Mutation p.A135D 0.08 deleterious(0.04) possibly_damaging(0.733) TCGA-43-A56U-01 12 26629880 26629880 C G ITPR2 Missense_Mutation p.E2062Q 0.08 deleterious(0.02) possibly_damaging(0.626) TCGA-43-A56U-01 12 44782282 44782282 G C TMEM117 Missense_Mutation p.E458Q 0.07 deleterious_low_confidence(0.03) probably_damaging(0.991) TCGA-43-A56U-01 12 45209896 45209896 A C NELL2 Missense_Mutation p.S120A 0.08 tolerated(0.8) benign(0.074) TCGA-43-A56U-01 12 55420707 55420707 C T NEUROD4 Missense_Mutation p.L162F 0.08 deleterious(0) probably_damaging(1) TCGA-43-A56U-01 12 55725577 55725577 G A OR6C3 Silent p.T31T 0.06 TCGA-43-A56U-01 12 65136942 65136942 C G GNS Missense_Mutation p.K257N 0.06 tolerated(0.16) benign(0.315) TCGA-43-A56U-01 12 6702735 6702735 G A CHD4 Silent p.I787I 0.06 TCGA-43-A56U-01 12 91550887 91550887 C A DCN Missense_Mutation p.R206L 0.06 deleterious(0) probably_damaging(0.915) TCGA-43-A56U-01 12 93881337 93881337 G C MRPL42 Missense_Mutation p.R95T 0.08 tolerated(0.09) benign(0.168) TCGA-43-A56U-01 12 96384198 96384198 C A HAL Silent p.P276P 0.10 TCGA-43-A56U-01 13 32977123 32977123 C G N4BP2L1 Missense_Mutation p.E230Q 0.15 tolerated_low_confidence(0.19) benign(0.002) TCGA-43-A56U-01 13 36686327 36686327 T C DCLK1 Missense_Mutation p.I134M 0.14 tolerated(0.13) unknown(0) TCGA-43-A56U-01 13 37678323 37678323 G T CSNK1A1L 3'UTR 0.21 TCGA-43-A56U-01 13 41834680 41834680 C G MTRF1 Missense_Mutation p.E122Q 0.11 tolerated(0.1) probably_damaging(0.913) TCGA-43-A56U-01 13 42874074 42874074 C T AKAP11 Missense_Mutation p.P398S 0.06 deleterious(0) probably_damaging(0.999) TCGA-43-A56U-01 13 52035123 52035123 C G RPS4XP16 RNA 0.12 TCGA-43-A56U-01 13 84455256 84455256 C T SLITRK1 Silent p.L129L 0.16 TCGA-43-A56U-01 13 99908004 99908004 G C GPR18 Missense_Mutation p.I41M 0.11 tolerated(0.18) benign(0.36) TCGA-43-A56U-01 13 99908046 99908046 G C GPR18 Silent p.V27V 0.11 TCGA-43-A56U-01 14 20825922 20825922 T A PARP2 Nonsense_Mutation p.L573* 0.12 TCGA-43-A56U-01 14 51401846 51401846 C T PYGL Missense_Mutation p.G135S 0.12 deleterious(0) probably_damaging(1) TCGA-43-A56U-01 14 65253400 65253400 C G SPTB Missense_Mutation p.E1095Q 0.08 deleterious(0.01) probably_damaging(0.98) TCGA-43-A56U-01 14 68222755 68222755 C G ZFYVE26 Missense_Mutation p.E2232D 0.09 tolerated(0.28) benign(0.088) TCGA-43-A56U-01 14 72054904 72054904 C G SIPA1L1 Missense_Mutation p.C105W 0.07 tolerated(0.18) possibly_damaging(0.624) TCGA-43-A56U-01 14 72054939 72054939 G T SIPA1L1 Missense_Mutation p.S117I 0.06 tolerated(0.41) possibly_damaging(0.755) TCGA-43-A56U-01 14 77950779 77950779 G T ISM2 Missense_Mutation p.P172T 0.10 tolerated(0.11) unknown(0) TCGA-43-A56U-01 14 86088713 86088713 C A FLRT2 Missense_Mutation p.N285K 0.08 tolerated(0.05) possibly_damaging(0.593) TCGA-43-A56U-01 14 88654410 88654410 T C KCNK10 Silent p.L304L 0.09 TCGA-43-A56U-01 14 89154707 89154707 T C EML5 Missense_Mutation p.T884A 0.05 deleterious(0.05) benign(0.012) TCGA-43-A56U-01 14 96807948 96807948 G C ATG2B Missense_Mutation p.P279A 0.08 deleterious(0.01) probably_damaging(0.98) TCGA-43-A56U-01 15 102345964 102345964 C T OR4F6 Silent p.F14F 0.12 TCGA-43-A56U-01 15 23811042 23811042 C A MKRN3 Missense_Mutation p.S38Y 0.14 deleterious(0) possibly_damaging(0.675) TCGA-43-A56U-01 15 25304786 25304786 G T SNORD116-3 3'Flank 0.11 TCGA-43-A56U-01 15 25427424 25427424 G A SNORD115-6 3'Flank 0.10 TCGA-43-A56U-01 15 41011093 41011093 G C RAD51 Missense_Mutation p.E177Q 0.18 tolerated(0.26) benign(0.144) TCGA-43-A56U-01 15 43495333 43495333 T A EPB42 Nonsense_Mutation p.R617* 0.06 TCGA-43-A56U-01 15 50545851 50545851 G A HDC Silent p.L245L 0.13 TCGA-43-A56U-01 15 75042775 75042775 C T CYP1A2 Silent p.S232S 0.07 TCGA-43-A56U-01 16 27374931 27374931 C T IL4R Missense_Mutation p.S753L 0.10 tolerated(0.16) benign(0.01) TCGA-43-A56U-01 16 28509310 28509310 G T APOBR Missense_Mutation p.W983L 0.10 deleterious(0) possibly_damaging(0.803) TCGA-43-A56U-01 16 28509311 28509311 G C APOBR Missense_Mutation p.W983C 0.10 deleterious(0) probably_damaging(0.95) TCGA-43-A56U-01 16 31097751 31097751 G C PRSS53 Missense_Mutation p.I190M 0.14 deleterious(0.01) benign(0.175) TCGA-43-A56U-01 16 31421808 31421808 G T ITGAD Missense_Mutation p.M392I 0.09 tolerated(0.13) benign(0.002) TCGA-43-A56U-01 16 3614029 3614029 G A NLRC3 Silent p.P350P 0.09 TCGA-43-A56U-01 16 61689526 61689526 G A CDH8 Missense_Mutation p.P585L 0.10 tolerated(0.67) probably_damaging(0.966) TCGA-43-A56U-01 16 66430006 66430006 T C CDH5 Missense_Mutation p.V421A 0.10 deleterious(0) possibly_damaging(0.491) TCGA-43-A56U-01 16 67231949 67231949 G A E2F4 Missense_Mutation p.D389N 0.13 deleterious(0) possibly_damaging(0.632) TCGA-43-A56U-01 16 74761268 74761268 C T FA2H Missense_Mutation p.R127Q 0.10 tolerated(0.89) benign(0.001) TCGA-43-A56U-01 16 77317856 77317856 G T ADAMTS18 Silent p.I1221I 0.07 TCGA-43-A56U-01 17 11513805 11513805 C G DNAH9 Missense_Mutation p.S236C 0.10 probably_damaging(0.959) TCGA-43-A56U-01 17 12032560 12032560 G - MAP2K4 Frame_Shift_Del p.E333Kfs*30 0.16 TCGA-43-A56U-01 17 18041446 18041446 G A MYO15A Silent p.E1631E 0.08 TCGA-43-A56U-01 17 18832145 18832145 G C PRPSAP2 Missense_Mutation p.D276H 0.12 tolerated(0.07) benign(0.006) TCGA-43-A56U-01 17 27068496 27068496 G T NEK8 Nonsense_Mutation p.G653* 0.20 TCGA-43-A56U-01 17 3181471 3181471 G T OR3A2 Missense_Mutation p.H253Q 0.09 deleterious(0) probably_damaging(1) TCGA-43-A56U-01 17 39182840 39182840 G C KRTAP1-5 3'UTR 0.09 TCGA-43-A56U-01 17 42979990 42979990 G T CCDC103 Silent p.L178L 0.07 TCGA-43-A56U-01 17 46024064 46024064 G T PNPO Silent p.R234R 0.15 TCGA-43-A56U-01 17 61889457 61889457 G T DDX42 Missense_Mutation p.G522C 0.08 deleterious(0) probably_damaging(0.984) TCGA-43-A56U-01 17 61949892 61949892 A T CSH2 Intron 0.08 TCGA-43-A56U-01 17 72878745 72878745 C T FADS6 Silent p.T151T 0.17 TCGA-43-A56U-01 17 7463198 7463198 G A TNFSF12-TNFSF13 Missense_Mutation p.A205T 0.08 tolerated_low_confidence(0.53) benign(0.019) TCGA-43-A56U-01 17 76501521 76501521 G A DNAH17 Missense_Mutation p.R1600C 0.12 benign(0.096) TCGA-43-A56U-01 17 8354152 8354152 C T NDEL1 Missense_Mutation p.S194L 0.11 tolerated(0.12) probably_damaging(0.999) TCGA-43-A56U-01 18 23632698 23632698 G C SS18 Missense_Mutation p.S166C 0.07 deleterious_low_confidence(0) possibly_damaging(0.628) TCGA-43-A56U-01 18 47778058 47778058 C A CCDC11 Silent p.L190L 0.08 TCGA-43-A56U-01 18 50912455 50912455 A G DCC Missense_Mutation p.N801S 0.29 deleterious(0.02) benign(0.196) TCGA-43-A56U-01 18 580658 580658 A G CETN1 Missense_Mutation p.I84V 0.15 tolerated(0.09) benign(0.058) TCGA-43-A56U-01 18 71740966 71740966 C A FBXO15 Splice_Site p.X422_splice 0.09 TCGA-43-A56U-01 19 12800594 12800594 C A FBXW9 Missense_Mutation p.G376V 0.09 deleterious(0) probably_damaging(0.915) TCGA-43-A56U-01 19 12800595 12800595 C G FBXW9 Missense_Mutation p.G376R 0.08 deleterious(0.01) probably_damaging(0.982) TCGA-43-A56U-01 19 15053123 15053123 G T OR7C2 Missense_Mutation p.V275L 0.07 deleterious_low_confidence(0.04) benign(0.107) TCGA-43-A56U-01 19 15465824 15465824 C G AKAP8 Missense_Mutation p.E661Q 0.12 deleterious_low_confidence(0.03) benign(0.058) TCGA-43-A56U-01 19 15760789 15760789 G T CYP4F3 Missense_Mutation p.Q238H 0.07 tolerated(0.35) benign(0.005) TCGA-43-A56U-01 19 15794363 15794363 C G CYP4F12 Missense_Mutation p.S236R 0.10 tolerated(0.41) benign(0.063) TCGA-43-A56U-01 19 16279011 16279011 A G CIB3 Missense_Mutation p.F95L 0.18 tolerated(1) probably_damaging(0.977) TCGA-43-A56U-01 19 17895592 17895592 G C FCHO1 Missense_Mutation p.G762A 0.07 tolerated(0.4) benign(0.019) TCGA-43-A56U-01 19 23543918 23543918 C T ZNF91 Silent p.K621K 0.11 TCGA-43-A56U-01 19 31038987 31038987 C A ZNF536 Missense_Mutation p.H821N 0.08 tolerated(0.15) benign(0.046) TCGA-43-A56U-01 19 35826942 35826942 G T CD22 Missense_Mutation p.R139M 0.06 deleterious(0.02) possibly_damaging(0.593) TCGA-43-A56U-01 19 35829161 35829161 C A CD22 Missense_Mutation p.P359H 0.07 deleterious(0) probably_damaging(0.993) TCGA-43-A56U-01 19 36831383 36831383 C A ZFP14 Nonsense_Mutation p.E449* 0.09 TCGA-43-A56U-01 19 39600823 39600823 G T PAPL 3'UTR 0.11 TCGA-43-A56U-01 19 42585005 42585005 A G ZNF574 Silent p.T749T 0.10 TCGA-43-A56U-01 19 45561023 45561023 G T CLASRP Missense_Mutation p.K160N 0.10 tolerated(0.15) possibly_damaging(0.579) TCGA-43-A56U-01 19 49377995 49377995 C T PPP1R15A Missense_Mutation p.A502V 0.08 deleterious(0) probably_damaging(0.935) TCGA-43-A56U-01 19 50166602 50166602 G C IRF3 Nonsense_Mutation p.S112* 0.17 TCGA-43-A56U-01 19 52569292 52569292 G A ZNF841 Missense_Mutation p.H615Y 0.10 deleterious(0) probably_damaging(0.997) TCGA-43-A56U-01 19 52671322 52671322 C A ZNF836 Missense_Mutation p.A2S 0.05 tolerated(0.06) probably_damaging(0.935) TCGA-43-A56U-01 19 52709227 52709227 G A PPP2R1A Missense_Mutation p.D61N 0.13 deleterious(0) benign(0.426) TCGA-43-A56U-01 19 53762553 53762553 C T VN1R2 Missense_Mutation p.P309S 0.09 deleterious(0.01) probably_damaging(0.946) TCGA-43-A56U-01 19 54663891 54663891 G C TMC4 3'Flank 0.16 TCGA-43-A56U-01 19 55043994 55043994 C A KIR3DX1 5'Flank 0.06 TCGA-43-A56U-01 19 56363563 56363563 C G NLRP4 Silent p.L39L 0.07 TCGA-43-A56U-01 19 56370460 56370460 G T NLRP4 Missense_Mutation p.K567N 0.10 tolerated(0.5) benign(0.009) TCGA-43-A56U-01 19 56466640 56466640 C A NLRP8 Missense_Mutation p.L406M 0.10 deleterious(0) probably_damaging(0.998) TCGA-43-A56U-01 19 57646322 57646322 G T ZIM3 Nonsense_Mutation p.Y461* 0.06 TCGA-43-A56U-01 19 9056391 9056391 G T MUC16 Missense_Mutation p.T10352N 0.11 benign(0.007) TCGA-43-A56U-01 19 9060646 9060646 G T MUC16 Missense_Mutation p.L8934I 0.06 unknown(0) TCGA-43-A56U-01 1 102312489 102312489 G C OLFM3 Intron 0.07 TCGA-43-A56U-01 1 115277111 115277111 C G CSDE1 Silent p.L224L 0.12 TCGA-43-A56U-01 1 144880858 144880858 C A PDE4DIP Missense_Mutation p.G1257V 0.09 deleterious(0) possibly_damaging(0.725) TCGA-43-A56U-01 1 145587461 145587461 C G NUDT17 Missense_Mutation p.E207Q 0.12 deleterious(0) probably_damaging(1) TCGA-43-A56U-01 1 151109037 151109037 G C SEMA6C Silent p.V331V 0.06 TCGA-43-A56U-01 1 152082758 152082758 C T TCHH Missense_Mutation p.E979K 0.08 unknown(0) TCGA-43-A56U-01 1 152082893 152082893 C G TCHH Missense_Mutation p.E934Q 0.07 unknown(0) TCGA-43-A56U-01 1 152083107 152083107 C T TCHH Silent p.R862R 0.09 TCGA-43-A56U-01 1 153591383 153591383 G A S100A13 Silent p.I95I 0.08 TCGA-43-A56U-01 1 156352398 156352398 C A RHBG Intron 0.16 TCGA-43-A56U-01 1 157557703 157557703 C A FCRL4 Missense_Mutation p.D172Y 0.29 deleterious(0) possibly_damaging(0.883) TCGA-43-A56U-01 1 158324219 158324219 C T CD1E Silent p.F37F 0.10 TCGA-43-A56U-01 1 159283478 159283478 C A OR10J3 Silent p.A324A 0.09 TCGA-43-A56U-01 1 160328024 160328024 T G NCSTN Missense_Mutation p.F698C 0.07 deleterious(0) probably_damaging(1) TCGA-43-A56U-01 1 161088936 161088936 G T NIT1 Missense_Mutation p.M37I 0.10 deleterious(0.02) benign(0.017) TCGA-43-A56U-01 1 161722885 161722885 C G DUSP12 Missense_Mutation p.S232C 0.08 deleterious(0) probably_damaging(0.99) TCGA-43-A56U-01 1 169565335 169565335 T A SELP Silent p.P643P 0.07 TCGA-43-A56U-01 1 169798627 169798627 A G C1orf112 Intron 0.10 TCGA-43-A56U-01 1 179013046 179013046 G C FAM20B Missense_Mutation p.V22L 0.09 tolerated(0.97) benign(0.001) TCGA-43-A56U-01 1 17958941 17958941 C G ARHGEF10L Silent p.V570V 0.10 TCGA-43-A56U-01 1 180165548 180165548 C T QSOX1 Silent p.I540I 0.11 TCGA-43-A56U-01 1 186324870 186324870 G C TPR Nonsense_Mutation p.S640* 0.08 TCGA-43-A56U-01 1 19454798 19454798 G A UBR4 Silent p.L3006L 0.09 TCGA-43-A56U-01 1 207646967 207646967 G A CR2 Missense_Mutation p.V686I 0.09 tolerated(0.09) probably_damaging(0.999) TCGA-43-A56U-01 1 210334275 210334275 G T SYT14 Missense_Mutation p.W583L 0.09 deleterious(0) probably_damaging(0.996) TCGA-43-A56U-01 1 21800034 21800034 C G NBPF3 Nonsense_Mutation p.S299* 0.07 TCGA-43-A56U-01 1 226595696 226595696 C G PARP1 5'UTR 0.17 TCGA-43-A56U-01 1 227216867 227216867 C T CDC42BPA Missense_Mutation p.R1273Q 0.11 deleterious(0) possibly_damaging(0.794) TCGA-43-A56U-01 1 236972053 236972053 A T MTR Missense_Mutation p.E130V 0.10 tolerated(0.07) benign(0.014) TCGA-43-A56U-01 1 237659925 237659925 C A RYR2 Missense_Mutation p.H692Q 0.10 probably_damaging(0.999) TCGA-43-A56U-01 1 248112202 248112202 G T OR2L8 Missense_Mutation p.G15W 0.12 deleterious(0) probably_damaging(1) TCGA-43-A56U-01 1 248487802 248487802 G T OR2M7 Silent p.T23T 0.07 TCGA-43-A56U-01 1 248685068 248685068 G T OR2G6 Missense_Mutation p.G41W 0.08 deleterious(0) possibly_damaging(0.875) TCGA-43-A56U-01 1 2492143 2492143 C T TNFRSF14 Missense_Mutation p.H181Y 0.20 deleterious(0.01) possibly_damaging(0.51) TCGA-43-A56U-01 1 26355726 26355726 C T EXTL1 Silent p.L274L 0.11 TCGA-43-A56U-01 1 27057835 27057835 C T ARID1A Nonsense_Mutation p.Q515* 0.07 TCGA-43-A56U-01 1 33330382 33330382 G A FNDC5 Silent p.F97F 0.15 TCGA-43-A56U-01 1 37337963 37337963 G T GRIK3 Silent p.I186I 0.08 TCGA-43-A56U-01 1 38227250 38227250 G A EPHA10 Missense_Mutation p.A226V 0.15 deleterious(0.01) probably_damaging(0.973) TCGA-43-A56U-01 1 43908690 43908690 C G SZT2 Silent p.P2727P 0.09 TCGA-43-A56U-01 1 44154683 44154683 G C KDM4A Missense_Mutation p.E652Q 0.08 tolerated(0.86) probably_damaging(0.932) TCGA-43-A56U-01 1 45506068 45506068 C G ZSWIM5 Missense_Mutation p.K584N 0.12 tolerated(0.15) unknown(0) TCGA-43-A56U-01 1 52859131 52859131 C T ORC1 Missense_Mutation p.E356K 0.09 tolerated(0.29) benign(0.002) TCGA-43-A56U-01 1 67450567 67450567 A C MIER1 Missense_Mutation p.E561A 0.16 deleterious_low_confidence(0) possibly_damaging(0.601) TCGA-43-A56U-01 1 7797425 7797425 C T CAMTA1 Silent p.A1151A 0.11 TCGA-43-A56U-01 1 82456558 82456558 C G LPHN2 Missense_Mutation p.S1314C 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-43-A56U-01 1 85733435 85733435 G T BCL10 Missense_Mutation p.P193T 0.09 deleterious(0) probably_damaging(0.996) TCGA-43-A56U-01 20 23350992 23350992 G A GZF1 Missense_Mutation p.A684T 0.11 tolerated(0.09) benign(0.016) TCGA-43-A56U-01 20 31600637 31600637 C A BPIFB2 Missense_Mutation p.R78S 0.08 tolerated(0.18) benign(0.02) TCGA-43-A56U-01 20 33762679 33762679 C A PROCR Missense_Mutation p.T82K 0.12 tolerated(0.95) benign(0.286) TCGA-43-A56U-01 20 39831123 39831123 A T ZHX3 Missense_Mutation p.F812I 0.08 deleterious(0) probably_damaging(0.999) TCGA-43-A56U-01 20 45852994 45852994 G A ZMYND8 Missense_Mutation p.H1032Y 0.12 deleterious(0) benign(0.279) TCGA-43-A56U-01 20 62120374 62120374 C A EEF1A2 Silent p.L387L 0.10 TCGA-43-A56U-01 22 23214201 23214201 C A IGLV4-3 Missense_Mutation p.Q120K 0.10 tolerated(0.22) benign(0.007) TCGA-43-A56U-01 22 30189461 30189461 C T ASCC2 Missense_Mutation p.E603K 0.12 tolerated(0.14) benign(0.102) TCGA-43-A56U-01 22 31487031 31487031 C T SMTN Missense_Mutation p.S341F 0.11 deleterious(0) possibly_damaging(0.62) TCGA-43-A56U-01 22 31830004 31830004 C A DRG1 3'UTR 0.30 TCGA-43-A56U-01 22 39884183 39884183 C G MGAT3 Missense_Mutation p.F277L 0.08 deleterious(0) benign(0.444) TCGA-43-A56U-01 22 41222513 41222513 C T ST13 3'UTR 0.09 TCGA-43-A56U-01 2 112922667 112922667 C T FBLN7 Missense_Mutation p.P109S 0.10 tolerated(0.06) benign(0.394) TCGA-43-A56U-01 2 112922727 112922727 G T FBLN7 Missense_Mutation p.G129W 0.12 deleterious(0.01) probably_damaging(0.99) TCGA-43-A56U-01 2 113514206 113514206 C G CKAP2L Missense_Mutation p.E248Q 0.06 deleterious(0.05) benign(0.23) TCGA-43-A56U-01 2 118860868 118860868 G T INSIG2 Missense_Mutation p.V114F 0.07 deleterious(0.02) possibly_damaging(0.776) TCGA-43-A56U-01 2 131984440 131984440 G A POTEE Silent p.Q285Q 0.10 TCGA-43-A56U-01 2 133541193 133541193 T C NCKAP5 Missense_Mutation p.Q1064R 0.11 tolerated(1) benign(0.003) TCGA-43-A56U-01 2 163133258 163133258 C A IFIH1 Missense_Mutation p.G748V 0.11 deleterious(0) probably_damaging(1) TCGA-43-A56U-01 2 166773870 166773870 C G TTC21B Missense_Mutation p.G599A 0.11 tolerated(0.25) benign(0.003) TCGA-43-A56U-01 2 179431175 179431175 G A TTN Nonsense_Mutation p.R26562* 0.09 TCGA-43-A56U-01 2 179534361 179534361 G T TTN Missense_Mutation p.R11810S 0.07 TCGA-43-A56U-01 2 179594203 179594203 G A TTN Missense_Mutation p.P6227L 0.05 TCGA-43-A56U-01 2 179621364 179621364 A G TTN Silent p.F3613F 0.10 TCGA-43-A56U-01 2 182542929 182542929 G C NEUROD1 Missense_Mutation p.S220C 0.08 deleterious(0.04) benign(0.423) TCGA-43-A56U-01 2 183960318 183960318 C T DUSP19 Nonsense_Mutation p.Q196* 0.07 TCGA-43-A56U-01 2 192194725 192194725 A G MYO1B Missense_Mutation p.I106V 0.07 deleterious(0) benign(0.1) TCGA-43-A56U-01 2 203421184 203421184 C G BMPR2 Silent p.P932P 0.06 TCGA-43-A56U-01 2 210558206 210558206 A G MAP2 Missense_Mutation p.K438E 0.12 tolerated_low_confidence(0.18) benign(0.155) TCGA-43-A56U-01 2 21252595 21252595 C G APOB Silent p.L511L 0.11 TCGA-43-A56U-01 2 224831673 224831673 C T MRPL44 Silent p.F307F 0.08 TCGA-43-A56U-01 2 230655920 230655920 C T TRIP12 Missense_Mutation p.G1413D 0.14 tolerated(0.07) benign(0.252) TCGA-43-A56U-01 2 29245048 29245048 C A FAM179A Missense_Mutation p.T462K 0.05 deleterious(0.01) possibly_damaging(0.614) TCGA-43-A56U-01 2 55795483 55795483 C G SMEK2 Missense_Mutation p.M594I 0.08 deleterious(0.01) benign(0.053) TCGA-43-A56U-01 2 62115734 62115734 C G CCT4 5'UTR 0.27 TCGA-43-A56U-01 2 64819221 64819221 C T AFTPH 3'UTR 0.14 TCGA-43-A56U-01 2 73676812 73676812 G T ALMS1 Missense_Mutation p.R1052M 0.08 probably_damaging(0.976) TCGA-43-A56U-01 2 74683012 74683012 G A INO80B Missense_Mutation p.E107K 0.08 deleterious(0.04) possibly_damaging(0.874) TCGA-43-A56U-01 3 113375789 113375789 T C KIAA2018 Silent p.E1580E 0.09 TCGA-43-A56U-01 3 121100313 121100313 A T STXBP5L Missense_Mutation p.I865F 0.09 tolerated(0.08) benign(0.005) TCGA-43-A56U-01 3 121410665 121410665 C G GOLGB1 Missense_Mutation p.E2516Q 0.08 probably_damaging(0.996) TCGA-43-A56U-01 3 124377323 124377323 C T KALRN Missense_Mutation p.R119C 0.09 deleterious(0) probably_damaging(0.956) TCGA-43-A56U-01 3 129824456 129824456 C T FAM86HP RNA 0.15 TCGA-43-A56U-01 3 132209822 132209822 G A DNAJC13 Missense_Mutation p.E1184K 0.11 deleterious(0.03) benign(0.017) TCGA-43-A56U-01 3 133476788 133476788 C A TF Missense_Mutation p.T349K 0.23 tolerated(0.94) benign(0) TCGA-43-A56U-01 3 138417809 138417809 T C PIK3CB Silent p.P570P 0.24 TCGA-43-A56U-01 3 140281083 140281083 C G CLSTN2 Silent p.L715L 0.13 TCGA-43-A56U-01 3 148614597 148614597 A T CPA3 3'UTR 0.18 TCGA-43-A56U-01 3 151599000 151599000 T C SUCNR1 Silent p.T223T 0.08 TCGA-43-A56U-01 3 153958194 153958194 G C ARHGEF26 Missense_Mutation p.R709T 0.12 tolerated(0.3) possibly_damaging(0.892) TCGA-43-A56U-01 3 153958226 153958226 G A ARHGEF26 Missense_Mutation p.E720K 0.14 tolerated(0.12) benign(0.062) TCGA-43-A56U-01 3 164907492 164907492 C A SLITRK3 Missense_Mutation p.G376V 0.23 tolerated(0.4) probably_damaging(0.921) TCGA-43-A56U-01 3 173322201 173322201 A T NLGN1 5'UTR 0.13 TCGA-43-A56U-01 3 183770919 183770919 C A HTR3C Silent p.V17V 0.14 TCGA-43-A56U-01 3 194182961 194182961 G C ATP13A3 5'UTR 0.21 TCGA-43-A56U-01 3 25661379 25661379 G C TOP2B Missense_Mutation p.Q1008E 0.15 tolerated(0.06) benign(0.018) TCGA-43-A56U-01 3 37366834 37366834 C T GOLGA4 Missense_Mutation p.L1175F 0.08 probably_damaging(0.945) TCGA-43-A56U-01 3 38622809 38622809 G A SCN5A Silent p.L947L 0.16 TCGA-43-A56U-01 3 45127465 45127465 G A CDCP1 Nonsense_Mutation p.R726* 0.11 TCGA-43-A56U-01 3 49738999 49738999 G T RNF123 Missense_Mutation p.E451D 0.17 tolerated(0.33) possibly_damaging(0.48) TCGA-43-A56U-01 3 49756821 49756821 G A AMIGO3 Silent p.F26F 0.07 TCGA-43-A56U-01 3 65361463 65361463 C A MAGI1 Missense_Mutation p.K1051N 0.09 deleterious(0) probably_damaging(0.984) TCGA-43-A56U-01 4 100235154 100235154 C G ADH1B Missense_Mutation p.A218P 0.05 deleterious(0) possibly_damaging(0.816) TCGA-43-A56U-01 4 138452897 138452897 C G PCDH18 Missense_Mutation p.E116Q 0.08 tolerated(0.07) benign(0.014) TCGA-43-A56U-01 4 177648966 177648966 C A VEGFC Missense_Mutation p.C173F 0.12 deleterious(0) probably_damaging(1) TCGA-43-A56U-01 4 6474016 6474016 G C PPP2R2C 5'UTR 0.09 TCGA-43-A56U-01 4 75482021 75482021 G T AREGB Missense_Mutation p.G26V 0.22 deleterious(0.01) probably_damaging(0.932) TCGA-43-A56U-01 4 80328030 80328030 A G GK2 Missense_Mutation p.L442P 0.06 deleterious(0) probably_damaging(1) TCGA-43-A56U-01 5 112889329 112889329 G T YTHDC2 Missense_Mutation p.G637V 0.09 tolerated(0.25) benign(0.028) TCGA-43-A56U-01 5 133914244 133914244 C T JADE2 Missense_Mutation p.S537L 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-43-A56U-01 5 1341901 1341901 G A CLPTM1L Missense_Mutation p.A113V 0.10 tolerated(0.24) benign(0.016) TCGA-43-A56U-01 5 140562711 140562711 G A PCDHB16 Missense_Mutation p.E193K 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.861) TCGA-43-A56U-01 5 140762652 140762652 C T PCDHGA7 Silent p.R62R 0.06 TCGA-43-A56U-01 5 180377418 180377418 C A BTNL8 Silent p.I459I 0.24 TCGA-43-A56U-01 5 180377434 180377434 G C BTNL8 Missense_Mutation p.E465Q 0.24 tolerated(0.5) benign(0.068) TCGA-43-A56U-01 5 23527606 23527606 C A PRDM9 Silent p.P803P 0.11 TCGA-43-A56U-01 5 32783035 32783035 G C NPR3 Missense_Mutation p.E443Q 0.19 tolerated(0.33) benign(0.002) TCGA-43-A56U-01 5 39202112 39202112 A T FYB Silent p.P327P 0.10 TCGA-43-A56U-01 5 45262576 45262576 G T HCN1 Missense_Mutation p.P707H 0.15 tolerated_low_confidence(0.06) possibly_damaging(0.75) TCGA-43-A56U-01 5 45262577 45262577 G T HCN1 Missense_Mutation p.P707T 0.15 tolerated_low_confidence(0.06) benign(0.185) TCGA-43-A56U-01 5 94230530 94230530 C T MCTP1 Missense_Mutation p.D555N 0.13 deleterious(0.04) possibly_damaging(0.459) TCGA-43-A56U-01 6 105526588 105526588 C A LIN28B Missense_Mutation p.T228K 0.10 deleterious_low_confidence(0.04) benign(0.081) TCGA-43-A56U-01 6 12125771 12125771 C A HIVEP1 Missense_Mutation p.Q1915K 0.14 tolerated(0.99) benign(0) TCGA-43-A56U-01 6 129621929 129621929 G - LAMA2 Frame_Shift_Del p.R1029Hfs*46 0.15 TCGA-43-A56U-01 6 132910646 132910646 G A TAAR5 Silent p.S60S 0.07 TCGA-43-A56U-01 6 135318664 135318664 C A HBS1L Missense_Mutation p.A224S 0.15 tolerated(0.76) benign(0.001) TCGA-43-A56U-01 6 151936707 151936707 G C CCDC170 Missense_Mutation p.E614Q 0.11 deleterious(0.01) benign(0.358) TCGA-43-A56U-01 6 15496730 15496730 G - JARID2 Frame_Shift_Del p.Q426Sfs*35 0.10 TCGA-43-A56U-01 6 167717489 167717489 G C UNC93A Missense_Mutation p.K236N 0.12 tolerated(0.09) benign(0.111) TCGA-43-A56U-01 6 24588863 24588863 G T KIAA0319 Missense_Mutation p.P318T 0.07 tolerated(0.2) benign(0.002) TCGA-43-A56U-01 6 26124027 26124027 C A HIST1H2BC Nonsense_Mutation p.E36* 0.11 TCGA-43-A56U-01 6 38813359 38813359 A C DNAH8 Missense_Mutation p.I1402L 0.13 benign(0.04) TCGA-43-A56U-01 6 43024077 43024077 C G MRPL2 Missense_Mutation p.E124D 0.08 deleterious(0.04) probably_damaging(0.966) TCGA-43-A56U-01 6 55638987 55638987 G T BMP5 Nonsense_Mutation p.S296* 0.06 TCGA-43-A56U-01 6 69944946 69944946 C G BAI3 Missense_Mutation p.P877R 0.10 deleterious(0) probably_damaging(0.999) TCGA-43-A56U-01 6 76412552 76412552 T A SENP6 Missense_Mutation p.M827K 0.07 tolerated(0.55) benign(0.362) TCGA-43-A56U-01 6 85472343 85472343 G A TBX18 Missense_Mutation p.P139L 0.10 tolerated(0.36) benign(0.003) TCGA-43-A56U-01 7 103131137 103131137 G A RELN Silent p.L3195L 0.07 TCGA-43-A56U-01 7 105189098 105189098 C G RINT1 Missense_Mutation p.L313V 0.10 deleterious(0) probably_damaging(0.927) TCGA-43-A56U-01 7 128481232 128481232 A G FLNC Missense_Mutation p.I608V 0.10 tolerated(0.38) benign(0.032) TCGA-43-A56U-01 7 131130621 131130621 T C MKLN1 Missense_Mutation p.V495A 0.11 deleterious(0) benign(0.395) TCGA-43-A56U-01 7 148486850 148486850 A G CUL1 Missense_Mutation p.S536G 0.10 tolerated(0.1) benign(0.101) TCGA-43-A56U-01 7 149480625 149480625 G A SSPO RNA 0.07 TCGA-43-A56U-01 7 19184940 19184940 A C FERD3L Missense_Mutation p.F16V 0.07 deleterious(0) possibly_damaging(0.713) TCGA-43-A56U-01 7 47886512 47886512 T C PKD1L1 Silent p.P1706P 0.08 TCGA-43-A56U-01 7 48349729 48349729 C T ABCA13 Silent p.F3169F 0.08 TCGA-43-A56U-01 7 55219002 55219002 C G EGFR Missense_Mutation p.P192R 0.10 tolerated(0.47) possibly_damaging(0.508) TCGA-43-A56U-01 7 62752668 62752668 T A ZNF733P RNA 0.09 TCGA-43-A56U-01 7 65557022 65557022 C T ASL Silent p.L364L 0.06 TCGA-43-A56U-01 7 7278353 7278353 G A C1GALT1 Missense_Mutation p.D230N 0.13 tolerated(0.84) benign(0.001) TCGA-43-A56U-01 7 73010276 73010276 C G MLXIPL Missense_Mutation p.Q694H 0.12 deleterious(0.02) possibly_damaging(0.78) TCGA-43-A56U-01 7 73922512 73922512 C G GTF2IRD1 Silent p.L34L 0.09 TCGA-43-A56U-01 7 74129193 74129193 T A GTF2I Silent p.T260T 0.05 TCGA-43-A56U-01 7 82579169 82579169 G T PCLO Missense_Mutation p.Q3579K 0.11 unknown(0) TCGA-43-A56U-01 7 92762845 92762845 G C SAMD9L Missense_Mutation p.L814V 0.20 deleterious(0) probably_damaging(0.987) TCGA-43-A56U-01 7 97823549 97823549 G T LMTK2 Nonsense_Mutation p.E1258* 0.09 TCGA-43-A56U-01 8 110448672 110448672 C G PKHD1L1 Missense_Mutation p.T1204S 0.12 tolerated(0.36) benign(0.257) TCGA-43-A56U-01 8 113256644 113256644 C A CSMD3 Nonsense_Mutation p.G3461* 0.08 TCGA-43-A56U-01 8 120801981 120801981 G A TAF2 Silent p.F473F 0.32 TCGA-43-A56U-01 8 124266517 124266517 G A ZHX1 Missense_Mutation p.P557L 0.10 tolerated(0.5) benign(0.002) TCGA-43-A56U-01 8 139164939 139164939 G T FAM135B Missense_Mutation p.S593R 0.08 tolerated(0.34) benign(0.006) TCGA-43-A56U-01 8 139263128 139263128 C A FAM135B Silent p.V166V 0.14 TCGA-43-A56U-01 8 144810275 144810275 C A FAM83H Missense_Mutation p.Q452H 0.10 deleterious(0.02) possibly_damaging(0.603) TCGA-43-A56U-01 8 26721688 26721688 C T ADRA1A Missense_Mutation p.E267K 0.10 deleterious(0) probably_damaging(0.999) TCGA-43-A56U-01 8 63492197 63492197 T C NKAIN3 Missense_Mutation p.F52L 0.10 deleterious(0.02) probably_damaging(0.997) TCGA-43-A56U-01 8 68204193 68204193 T C ARFGEF1 Missense_Mutation p.T269A 0.07 tolerated(0.51) benign(0.002) TCGA-43-A56U-01 8 69380928 69380928 G T C8orf34 Missense_Mutation p.L203F 0.11 deleterious(0.01) probably_damaging(0.972) TCGA-43-A56U-01 8 70585504 70585504 C A SLCO5A1 Missense_Mutation p.W716L 0.08 deleterious(0) probably_damaging(0.999) TCGA-43-A56U-01 9 107379790 107379790 C A OR13C9 Missense_Mutation p.E232D 0.08 tolerated(0.1) benign(0.022) TCGA-43-A56U-01 9 113170815 113170815 C T SVEP1 Silent p.L2355L 0.13 TCGA-43-A56U-01 9 114803709 114803709 G C SUSD1 3'UTR 0.24 TCGA-43-A56U-01 9 116135945 116135945 G A HDHD3 Silent p.I230I 0.07 TCGA-43-A56U-01 9 127115810 127115810 G A PSMB7 3'UTR 0.27 TCGA-43-A56U-01 9 133942545 133942545 G T LAMC3 Missense_Mutation p.G849V 0.13 deleterious(0) probably_damaging(1) TCGA-43-A56U-01 9 26905523 26905523 G A PLAA Silent p.L792L 0.11 TCGA-43-A56U-01 9 36390514 36390514 C T RNF38 Missense_Mutation p.D38N 0.12 tolerated_low_confidence(1) unknown(0) TCGA-43-A56U-01 9 39888159 39888159 C G SPATA31A2 Missense_Mutation p.F382L 0.10 deleterious(0.05) benign(0.024) TCGA-43-A56U-01 9 414946 414946 T C DOCK8 Missense_Mutation p.F1232S 0.08 deleterious(0.02) probably_damaging(0.998) TCGA-43-A56U-01 9 84606007 84606007 T - SPATA31D1 Frame_Shift_Del p.L208* 0.09 TCGA-43-A56U-01 9 91616283 91616283 G C S1PR3 Missense_Mutation p.E56D 0.06 deleterious(0) probably_damaging(0.999) TCGA-43-A56U-01 9 95776240 95776240 C T FGD3 Missense_Mutation p.S381L 0.12 deleterious(0) probably_damaging(1) TCGA-43-A56U-01 X 129771345 129771345 T A ENOX2 Missense_Mutation p.D419V 0.08 deleterious(0) probably_damaging(0.999) TCGA-43-A56U-01 X 138687895 138687895 G T MCF2 Silent p.R588R 0.08 TCGA-43-A56U-01 X 150793971 150793971 T A PASD1 Missense_Mutation p.S200T 0.08 deleterious(0.01) benign(0.351) TCGA-43-A56U-01 X 154261816 154261816 G T FUNDC2 Missense_Mutation p.G91V 0.23 deleterious(0) probably_damaging(0.992) TCGA-43-A56U-01 X 30326359 30326359 A G NR0B1 Silent p.S374S 0.06 TCGA-43-A56U-01 X 37026664 37026664 G T FAM47C Missense_Mutation p.G61C 0.11 deleterious(0) probably_damaging(0.981) TCGA-43-A56U-01 X 70324208 70324208 C G CXorf65 Missense_Mutation p.Q122H 0.14 deleterious(0) possibly_damaging(0.532) TCGA-43-A56U-01 X 70783295 70783295 G C OGT Missense_Mutation p.Q794H 0.10 deleterious(0.02) possibly_damaging(0.528) TCGA-43-A56V-01 10 105107209 105107209 T A PCGF6 Splice_Site p.X186_splice 0.44 TCGA-43-A56V-01 10 16916401 16916401 C A CUBN Missense_Mutation p.V3070F 0.21 deleterious(0.01) benign(0.002) TCGA-43-A56V-01 10 22896858 22896858 G A PIP4K2A Nonsense_Mutation p.Q113* 0.32 TCGA-43-A56V-01 10 26998696 26998696 C T PDSS1 Nonsense_Mutation p.R156* 0.17 TCGA-43-A56V-01 10 3190310 3190310 G C PITRM1 Intron 0.16 TCGA-43-A56V-01 10 32197629 32197629 T C ARHGAP12 Missense_Mutation p.Q52R 0.21 tolerated(0.14) probably_damaging(0.955) TCGA-43-A56V-01 11 103049792 103049792 C T DYNC2H1 Silent p.D2059D 0.10 TCGA-43-A56V-01 11 114271387 114271387 C G RBM7 5'UTR 0.23 TCGA-43-A56V-01 11 124310699 124310699 C T OR8B8 Missense_Mutation p.A95T 0.17 tolerated_low_confidence(0.49) benign(0.003) TCGA-43-A56V-01 11 1270797 1270797 C A MUC5B Silent p.P4229P 0.21 TCGA-43-A56V-01 11 134015861 134015861 G T JAM3 Missense_Mutation p.K211N 0.14 deleterious(0) probably_damaging(0.999) TCGA-43-A56V-01 11 27390165 27390165 G A LGR4 Missense_Mutation p.P702L 0.26 tolerated(0.11) benign(0.045) TCGA-43-A56V-01 11 47201809 47201809 G A PACSIN3 Silent p.D177D 0.12 TCGA-43-A56V-01 11 4976395 4976395 G T OR51A2 Missense_Mutation p.H183Q 0.37 deleterious(0) probably_damaging(0.998) TCGA-43-A56V-01 11 5291070 5291070 G T HBE1 Missense_Mutation p.S17R 0.30 deleterious(0.03) benign(0.012) TCGA-43-A56V-01 11 55110914 55110914 A T OR4A16 Missense_Mutation p.M80L 0.28 tolerated_low_confidence(0.16) benign(0.001) TCGA-43-A56V-01 11 55111025 55111025 G C OR4A16 Missense_Mutation p.A117P 0.17 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-43-A56V-01 11 55322132 55322132 G T OR4C15 Missense_Mutation p.G117V 0.24 tolerated_low_confidence(0.17) benign(0.01) TCGA-43-A56V-01 11 55563666 55563666 C A OR5D14 Missense_Mutation p.T212K 0.20 deleterious(0) possibly_damaging(0.836) TCGA-43-A56V-01 11 56019869 56019869 A T OR5T3 Missense_Mutation p.Y65F 0.16 deleterious(0) probably_damaging(0.973) TCGA-43-A56V-01 11 5602670 5602670 C A OR52B6 Nonsense_Mutation p.C188* 0.18 TCGA-43-A56V-01 11 56237131 56237131 G T OR5M3 Silent p.P281P 0.12 TCGA-43-A56V-01 11 57982608 57982608 T A OR1S1 Missense_Mutation p.M131K 0.24 deleterious(0) possibly_damaging(0.864) TCGA-43-A56V-01 11 59940308 59940308 G T MS4A6A 3'UTR 0.31 TCGA-43-A56V-01 11 64507201 64507201 G A RASGRP2 Silent p.N201N 0.23 TCGA-43-A56V-01 11 6806994 6806994 T C OR2AG1 Silent p.S242S 0.16 TCGA-43-A56V-01 11 72700071 72700071 C G FCHSD2 Missense_Mutation p.K153N 0.30 deleterious(0) probably_damaging(0.997) TCGA-43-A56V-01 11 73366856 73366856 T A PLEKHB1 Silent p.A133A 0.34 TCGA-43-A56V-01 11 8060241 8060241 A G TUB 5'UTR 0.21 TCGA-43-A56V-01 12 10313003 10313003 C A OLR1 Missense_Mutation p.R208L 0.51 tolerated(0.35) benign(0.021) TCGA-43-A56V-01 12 104181295 104181295 T A NT5DC3 Missense_Mutation p.Y371F 0.47 tolerated(0.83) benign(0.02) TCGA-43-A56V-01 12 108634305 108634305 C A WSCD2 Silent p.A443A 0.37 TCGA-43-A56V-01 12 120150444 120150444 T C CIT Missense_Mutation p.I1546V 0.41 tolerated(1) benign(0.001) TCGA-43-A56V-01 12 124281281 124281281 G T DNAH10 Missense_Mutation p.A571S 0.28 benign(0.047) TCGA-43-A56V-01 12 13715819 13715819 C A GRIN2B Missense_Mutation p.Q1451H 0.14 tolerated(1) possibly_damaging(0.67) TCGA-43-A56V-01 12 1988187 1988187 G T CACNA2D4 Missense_Mutation p.L527I 0.09 deleterious(0) probably_damaging(0.991) TCGA-43-A56V-01 12 22487042 22487042 C A ST8SIA1 Missense_Mutation p.W42L 0.61 tolerated(0.05) probably_damaging(0.997) TCGA-43-A56V-01 12 247623 247623 C A IQSEC3 Missense_Mutation p.A365E 0.51 tolerated(0.39) possibly_damaging(0.564) TCGA-43-A56V-01 12 29624866 29624867 - A OVCH1 Frame_Shift_Ins p.A576Rfs*47 0.31 TCGA-43-A56V-01 12 31862226 31862226 C A AMN1 Splice_Site p.X57_splice 0.52 TCGA-43-A56V-01 12 5153645 5153645 C A KCNA5 Missense_Mutation p.A111D 0.12 tolerated(0.65) benign(0.047) TCGA-43-A56V-01 12 56490383 56490383 G T ERBB3 Missense_Mutation p.G718C 0.41 deleterious(0) probably_damaging(1) TCGA-43-A56V-01 12 6837398 6837398 G T COPS7A Missense_Mutation p.R83L 0.09 tolerated(0.28) benign(0.014) TCGA-43-A56V-01 12 81624898 81624898 T G ACSS3 Nonsense_Mutation p.L526* 0.56 TCGA-43-A56V-01 12 8906584 8906584 G C RIMKLB Missense_Mutation p.E198Q 0.04 tolerated(0.22) probably_damaging(0.99) TCGA-43-A56V-01 12 9997143 9997143 A T KLRF1 3'UTR 0.50 TCGA-43-A56V-01 13 20356555 20356555 G A PSPC1 Missense_Mutation p.R115W 0.29 deleterious(0) probably_damaging(0.948) TCGA-43-A56V-01 13 31903728 31903728 T G B3GALTL Missense_Mutation p.Y474D 0.28 deleterious(0) probably_damaging(0.996) TCGA-43-A56V-01 13 32705882 32705882 G T FRY Missense_Mutation p.V264F 0.33 deleterious(0.01) benign(0.367) TCGA-43-A56V-01 13 50035258 50035258 G C SETDB2 Silent p.V56V 0.30 TCGA-43-A56V-01 13 70681403 70681403 C A KLHL1 Silent p.L143L 0.20 TCGA-43-A56V-01 13 73345095 73345095 G C DIS3 Missense_Mutation p.H568D 0.36 tolerated(0.52) benign(0.001) TCGA-43-A56V-01 13 78216875 78216875 A G SCEL Missense_Mutation p.Q661R 0.31 tolerated(0.18) benign(0.012) TCGA-43-A56V-01 14 100367334 100367334 T G EML1 Silent p.G341G 0.28 TCGA-43-A56V-01 14 101200718 101200718 G T DLK1 Missense_Mutation p.A213S 0.28 tolerated(0.15) benign(0.251) TCGA-43-A56V-01 14 101350883 101350883 G T RTL1 Silent p.S81S 0.21 TCGA-43-A56V-01 14 102471449 102471449 G A DYNC1H1 Missense_Mutation p.G1770D 0.09 benign(0.001) TCGA-43-A56V-01 14 103188648 103188648 A G RCOR1 Silent p.Q438Q 0.37 TCGA-43-A56V-01 14 104473018 104473018 C A TDRD9 Missense_Mutation p.P639T 0.24 deleterious(0) probably_damaging(0.997) TCGA-43-A56V-01 14 20345195 20345195 A G OR4K2 Missense_Mutation p.I257V 0.38 tolerated(0.09) benign(0.12) TCGA-43-A56V-01 14 21896114 21896114 C A CHD8 Missense_Mutation p.K505N 0.39 tolerated(0.22) possibly_damaging(0.589) TCGA-43-A56V-01 14 22133821 22133821 C A OR4E2 Missense_Mutation p.D175E 0.30 deleterious(0) probably_damaging(0.912) TCGA-43-A56V-01 14 24610357 24610357 G T EMC9 Missense_Mutation p.H53N 0.34 tolerated(0.32) benign(0.003) TCGA-43-A56V-01 14 31626174 31626174 C G HECTD1 Missense_Mutation p.D602H 0.44 deleterious(0) probably_damaging(0.999) TCGA-43-A56V-01 14 52481869 52481869 G T NID2 Silent p.P1051P 0.20 TCGA-43-A56V-01 14 78285427 78285427 G C ADCK1 Missense_Mutation p.A36P 0.30 tolerated(0.12) benign(0.076) TCGA-43-A56V-01 14 95088729 95088729 C G SERPINA3 Missense_Mutation p.N323K 0.33 tolerated(0.17) benign(0.019) TCGA-43-A56V-01 14 96152766 96152766 C T TCL1B 5'UTR 0.25 TCGA-43-A56V-01 15 20649609 20649609 C A HERC2P3 RNA 0.05 TCGA-43-A56V-01 15 25436473 25436473 C A SNORD115-11 3'Flank 0.34 TCGA-43-A56V-01 15 45431634 45431634 C T DUOX1 Missense_Mutation p.P409L 0.45 tolerated(0.22) benign(0.102) TCGA-43-A56V-01 15 52662480 52662480 C A MYO5A Silent p.R984R 0.43 TCGA-43-A56V-01 15 77906771 77906771 C T LINGO1 Missense_Mutation p.G493D 0.43 deleterious(0) probably_damaging(0.999) TCGA-43-A56V-01 15 83499662 83499662 A T WHAMM Silent p.P651P 0.56 TCGA-43-A56V-01 15 85230974 85230974 C G SEC11A Missense_Mutation p.D65H 0.33 deleterious(0) possibly_damaging(0.85) TCGA-43-A56V-01 15 88420285 88420285 C T NTRK3 Missense_Mutation p.D801N 0.28 tolerated(0.28) probably_damaging(0.989) TCGA-43-A56V-01 16 10274205 10274205 C A GRIN2A Missense_Mutation p.A22S 0.31 tolerated_low_confidence(0.14) benign(0.001) TCGA-43-A56V-01 16 10274206 10274206 C A GRIN2A Silent p.P21P 0.30 TCGA-43-A56V-01 16 20043222 20043222 C A GPR139 Silent p.T299T 0.21 TCGA-43-A56V-01 16 20344650 20344650 G C UMOD Missense_Mutation p.L637V 0.32 tolerated(0.36) unknown(0) TCGA-43-A56V-01 16 20348010 20348010 C A UMOD Missense_Mutation p.D594Y 0.24 deleterious(0) possibly_damaging(0.855) TCGA-43-A56V-01 16 21035957 21035957 G T DNAH3 Missense_Mutation p.D1869E 0.27 tolerated(0.1) benign(0.001) TCGA-43-A56V-01 16 23641017 23641017 C G PALB2 Missense_Mutation p.E820Q 0.31 deleterious(0.03) possibly_damaging(0.802) TCGA-43-A56V-01 16 29990577 29990577 G C TAOK2 Missense_Mutation p.G171R 0.26 deleterious(0) probably_damaging(0.999) TCGA-43-A56V-01 16 31072915 31072915 G A ZNF668 Missense_Mutation p.A468V 0.25 tolerated(0.54) benign(0.004) TCGA-43-A56V-01 16 50756610 50756610 G T NOD2 Missense_Mutation p.W931L 0.21 tolerated(0.08) probably_damaging(0.998) TCGA-43-A56V-01 16 61851490 61851490 G T CDH8 Silent p.V390V 0.33 TCGA-43-A56V-01 16 69600170 69600170 C A NFAT5 5'UTR 0.33 TCGA-43-A56V-01 16 74927697 74927697 C G WDR59 Missense_Mutation p.W627S 0.20 tolerated(0.45) benign(0.005) TCGA-43-A56V-01 16 75669624 75669624 A T KARS Missense_Mutation p.I278N 0.45 deleterious(0) probably_damaging(0.935) TCGA-43-A56V-01 16 89702784 89702784 T A DPEP1 Missense_Mutation p.L117Q 0.14 tolerated(0.72) benign(0.039) TCGA-43-A56V-01 16 9857939 9857939 G T GRIN2A Silent p.P1154P 0.27 TCGA-43-A56V-01 17 10355396 10355396 G A MYH4 Silent p.H1200H 0.42 TCGA-43-A56V-01 17 2585036 2585036 G A PAFAH1B1 Silent p.T391T 0.33 TCGA-43-A56V-01 17 27936005 27936005 G T ANKRD13B Missense_Mutation p.R186S 0.30 deleterious(0.01) benign(0.026) TCGA-43-A56V-01 17 38854449 38854449 T C KRT24 3'UTR 0.22 TCGA-43-A56V-01 17 43333321 43333321 C T SPATA32 Silent p.E76E 0.14 TCGA-43-A56V-01 17 60349844 60349844 C T TBC1D3P2 RNA 0.17 TCGA-43-A56V-01 17 72295924 72295924 C T DNAI2 Silent p.D264D 0.73 TCGA-43-A56V-01 17 72308270 72308270 G T DNAI2 Silent p.L541L 0.62 TCGA-43-A56V-01 17 7579699 7579699 C T TP53 Splice_Site p.X32_splice 0.39 TCGA-43-A56V-01 17 80887001 80887001 C T TBCD Silent p.I902I 0.06 TCGA-43-A56V-01 18 908347 908347 C G ADCYAP1 Silent p.L108L 0.29 TCGA-43-A56V-01 18 9547746 9547746 G A PPP4R1 3'UTR 0.29 TCGA-43-A56V-01 19 10116627 10116627 G T COL5A3 Silent p.I94I 0.38 TCGA-43-A56V-01 19 11172625 11172625 T C SMARCA4 3'UTR 0.38 TCGA-43-A56V-01 19 15569187 15569187 C A RASAL3 Missense_Mutation p.E280D 0.44 deleterious(0.01) benign(0.219) TCGA-43-A56V-01 19 17766754 17766754 C A UNC13A Silent p.T407T 0.31 TCGA-43-A56V-01 19 33716521 33716521 G T SLC7A10 Missense_Mutation p.A30D 0.25 tolerated(0.33) benign(0.029) TCGA-43-A56V-01 19 34263544 34263544 G T CHST8 Missense_Mutation p.G284V 0.20 deleterious(0) probably_damaging(0.993) TCGA-43-A56V-01 19 51020944 51020944 T G LRRC4B Missense_Mutation p.S676R 0.31 tolerated_low_confidence(0.47) benign(0.048) TCGA-43-A56V-01 19 54759288 54759288 G T LILRB5 Silent p.P271P 0.21 TCGA-43-A56V-01 19 55014931 55014931 A G LAIR2 Missense_Mutation p.Q17R 0.13 tolerated(0.1) possibly_damaging(0.463) TCGA-43-A56V-01 19 56410155 56410155 G T NLRP13 Missense_Mutation p.R980S 0.26 tolerated(0.25) benign(0.012) TCGA-43-A56V-01 1 114483842 114483842 A G HIPK1 Silent p.L279L 0.24 TCGA-43-A56V-01 1 14925598 14925598 G A KAZN Silent p.R35R 0.12 TCGA-43-A56V-01 1 150525423 150525423 C A ADAMTSL4 Missense_Mutation p.P43H 0.21 deleterious(0.02) possibly_damaging(0.779) TCGA-43-A56V-01 1 153791376 153791376 T A GATAD2B Missense_Mutation p.Q163L 0.24 deleterious(0) possibly_damaging(0.694) TCGA-43-A56V-01 1 156693228 156693228 C A ISG20L2 Silent p.V325V 0.25 TCGA-43-A56V-01 1 158225922 158225922 C T CD1A Missense_Mutation p.P152S 0.28 deleterious(0.02) probably_damaging(0.998) TCGA-43-A56V-01 1 158670197 158670197 C T OR6K2 Silent p.L82L 0.25 TCGA-43-A56V-01 1 160134147 160134147 A C ATP1A4 Missense_Mutation p.E327A 0.28 deleterious(0.02) benign(0.246) TCGA-43-A56V-01 1 167038214 167038214 C G GPA33 Silent p.S120S 0.28 TCGA-43-A56V-01 1 175048645 175048645 G T TNN Missense_Mutation p.D196Y 0.36 deleterious(0) probably_damaging(0.942) TCGA-43-A56V-01 1 176526014 176526014 G C PAPPA2 Missense_Mutation p.E186Q 0.22 tolerated_low_confidence(0.06) benign(0.107) TCGA-43-A56V-01 1 196879571 196879571 C A CFHR4 Nonsense_Mutation p.C319* 0.17 TCGA-43-A56V-01 1 204587364 204587364 C G LRRN2 Missense_Mutation p.R586P 0.26 deleterious(0.01) probably_damaging(0.985) TCGA-43-A56V-01 1 212798290 212798290 C T FAM71A Missense_Mutation p.T24I 0.33 deleterious(0.01) benign(0.013) TCGA-43-A56V-01 1 215960072 215960072 T A USH2A Missense_Mutation p.M3443L 0.15 benign(0) TCGA-43-A56V-01 1 217604330 217604330 T A GPATCH2 3'UTR 0.40 TCGA-43-A56V-01 1 23762384 23762384 C G ASAP3 Missense_Mutation p.G570A 0.09 deleterious(0) possibly_damaging(0.649) TCGA-43-A56V-01 1 237843814 237843814 C A RYR2 Missense_Mutation p.A2985E 0.50 benign(0.021) TCGA-43-A56V-01 1 240370358 240370358 C T FMN2 Missense_Mutation p.T749M 0.28 unknown(0) TCGA-43-A56V-01 1 240371888 240371888 T G FMN2 Missense_Mutation p.V1259G 0.27 benign(0.021) TCGA-43-A56V-01 1 248308743 248308744 CA - OR2M5 Frame_Shift_Del p.Q100Nfs*21 0.20 TCGA-43-A56V-01 1 248551757 248551757 C A OR2T6 Missense_Mutation p.P283H 0.24 deleterious(0.01) probably_damaging(0.942) TCGA-43-A56V-01 1 248551758 248551758 C T OR2T6 Silent p.P283P 0.24 TCGA-43-A56V-01 1 24989177 24989177 G A SRRM1 Missense_Mutation p.D504N 0.43 unknown(0) TCGA-43-A56V-01 1 34209177 34209177 G T CSMD2 Missense_Mutation p.S586Y 0.27 deleterious(0.01) probably_damaging(0.953) TCGA-43-A56V-01 1 46876109 46876109 C G FAAH Silent p.V405V 0.10 TCGA-43-A56V-01 1 53679150 53679150 G C CPT2 Missense_Mutation p.W620C 0.30 tolerated(0.17) probably_damaging(0.927) TCGA-43-A56V-01 1 55073701 55073701 C T ACOT11 Missense_Mutation p.S530L 0.39 deleterious(0) probably_damaging(0.99) TCGA-43-A56V-01 1 70488919 70488919 C T LRRC7 Silent p.I514I 0.08 TCGA-43-A56V-01 1 70504189 70504189 C G LRRC7 Silent p.T856T 0.07 TCGA-43-A56V-01 1 70518708 70518708 G T LRRC7 Splice_Site p.X1333_splice 0.07 TCGA-43-A56V-01 1 76288240 76288240 A C MSH4 Missense_Mutation p.E379A 0.42 deleterious(0.01) possibly_damaging(0.733) TCGA-43-A56V-01 1 86934733 86934733 C T CLCA1 Silent p.L27L 0.47 TCGA-43-A56V-01 1 89654341 89654341 C T GBP4 Missense_Mutation p.G445E 0.33 deleterious(0) possibly_damaging(0.907) TCGA-43-A56V-01 20 1145814 1145814 G - PSMF1 3'UTR 0.21 TCGA-43-A56V-01 20 13779142 13779142 A T NDUFAF5 Missense_Mutation p.E172V 0.21 tolerated(0.33) benign(0.063) TCGA-43-A56V-01 20 1961396 1961396 G A PDYN Missense_Mutation p.P113L 0.25 tolerated(0.26) benign(0.001) TCGA-43-A56V-01 20 43353506 43353506 C A WISP2 Missense_Mutation p.S135R 0.40 tolerated(0.05) benign(0.234) TCGA-43-A56V-01 20 57269498 57269498 G T NPEPL1 Missense_Mutation p.E119D 0.24 tolerated(1) benign(0) TCGA-43-A56V-01 20 57274283 57274283 A T NPEPL1 Missense_Mutation p.I210F 0.31 deleterious(0.01) benign(0.411) TCGA-43-A56V-01 20 57768629 57768629 C A ZNF831 Missense_Mutation p.S852Y 0.33 deleterious(0) possibly_damaging(0.78) TCGA-43-A56V-01 21 10910342 10910342 G T TPTE Missense_Mutation p.L472M 0.08 deleterious(0) probably_damaging(0.976) TCGA-43-A56V-01 21 11038784 11038784 C A BAGE2 RNA 0.16 TCGA-43-A56V-01 21 11039388 11039388 T C BAGE2 RNA 0.06 TCGA-43-A56V-01 22 23503161 23503161 C A RAB36 Missense_Mutation p.Q305K 0.50 tolerated(0.18) benign(0.013) TCGA-43-A56V-01 22 31536317 31536317 A G PLA2G3 Silent p.F8F 0.23 TCGA-43-A56V-01 22 50470482 50470482 C A TTLL8 Missense_Mutation p.R463L 0.30 deleterious(0) probably_damaging(1) TCGA-43-A56V-01 2 11721033 11721033 G C GREB1 Intron 0.33 TCGA-43-A56V-01 2 121748261 121748261 C A GLI2 3'UTR 0.35 TCGA-43-A56V-01 2 133543077 133543077 A T NCKAP5 Missense_Mutation p.I436K 0.27 deleterious(0) probably_damaging(1) TCGA-43-A56V-01 2 136566554 136566554 C T LCT Silent p.S1121S 0.21 TCGA-43-A56V-01 2 15770186 15770186 G T DDX1 Missense_Mutation p.D682Y 0.13 deleterious(0) benign(0.361) TCGA-43-A56V-01 2 173686659 173686659 C T RAPGEF4 Intron 0.22 TCGA-43-A56V-01 2 174055631 174055631 G T MLTK Missense_Mutation p.A142S 0.17 tolerated(0.69) benign(0.329) TCGA-43-A56V-01 2 178482928 178482928 C A TTC30A Nonsense_Mutation p.G168* 0.21 TCGA-43-A56V-01 2 178936695 178936695 A T PDE11A Missense_Mutation p.L157H 0.20 deleterious(0) probably_damaging(0.926) TCGA-43-A56V-01 2 187371464 187371464 G A ZC3H15 Missense_Mutation p.D331N 0.31 deleterious(0.05) benign(0.168) TCGA-43-A56V-01 2 191897750 191897750 A G STAT4 Missense_Mutation p.Y660H 0.28 deleterious(0.03) probably_damaging(0.959) TCGA-43-A56V-01 2 197183281 197183281 G T HECW2 Missense_Mutation p.T778N 0.20 tolerated_low_confidence(0.3) benign(0.042) TCGA-43-A56V-01 2 197521481 197521481 G C CCDC150 Missense_Mutation p.V101L 0.26 deleterious(0) benign(0.423) TCGA-43-A56V-01 2 211542655 211542655 G T CPS1 Silent p.V1489V 0.29 TCGA-43-A56V-01 2 218940177 218940177 T A RUFY4 Missense_Mutation p.L341Q 0.32 tolerated(0.1) possibly_damaging(0.578) TCGA-43-A56V-01 2 219694901 219694901 A T PRKAG3 Missense_Mutation p.W145R 0.28 deleterious(0.04) benign(0.223) TCGA-43-A56V-01 2 222307707 222307707 C G EPHA4 Missense_Mutation p.R639P 0.26 deleterious(0.03) probably_damaging(0.986) TCGA-43-A56V-01 2 225639664 225639664 C A DOCK10 Missense_Mutation p.G1991C 0.23 deleterious(0) probably_damaging(1) TCGA-43-A56V-01 2 238245135 238245135 G A COL6A3 Missense_Mutation p.P2870S 0.26 unknown(0) TCGA-43-A56V-01 2 239162200 239162200 G A PER2 Missense_Mutation p.P822S 0.22 deleterious(0.05) benign(0.266) TCGA-43-A56V-01 2 26683850 26683850 G T OTOF Missense_Mutation p.A1861D 0.28 deleterious(0) possibly_damaging(0.461) TCGA-43-A56V-01 2 27800905 27800905 C G C2orf16 Missense_Mutation p.A489G 0.32 deleterious(0.02) benign(0.029) TCGA-43-A56V-01 2 32474755 32474755 T A NLRC4 Silent p.I726I 0.20 TCGA-43-A56V-01 2 46372368 46372368 G A PRKCE Missense_Mutation p.E577K 0.06 deleterious(0.01) probably_damaging(1) TCGA-43-A56V-01 2 50850517 50850517 G T NRXN1 Missense_Mutation p.P390T 0.23 deleterious(0) probably_damaging(1) TCGA-43-A56V-01 2 51255111 51255111 C T NRXN1 Missense_Mutation p.A101T 0.18 tolerated(0.43) possibly_damaging(0.657) TCGA-43-A56V-01 2 80773031 80773031 G T CTNNA2 Splice_Site p.X462_splice 0.33 TCGA-43-A56V-01 3 112997048 112997048 T C BOC Missense_Mutation p.M549T 0.24 deleterious(0) possibly_damaging(0.672) TCGA-43-A56V-01 3 135720405 135720405 G T PPP2R3A Missense_Mutation p.R22L 0.18 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-43-A56V-01 3 145824319 145824319 C G PLOD2 Missense_Mutation p.R205S 0.49 deleterious(0) probably_damaging(1) TCGA-43-A56V-01 3 154886360 154886366 GTGCATG - MME Frame_Shift_Del p.M622Ifs*57 0.15 TCGA-43-A56V-01 3 159997046 159997046 T C IFT80 Missense_Mutation p.I591V 0.41 tolerated(0.46) benign(0.015) TCGA-43-A56V-01 3 169540219 169540219 C A LRRIQ4 Silent p.I170I 0.48 TCGA-43-A56V-01 3 185404846 185404846 G C IGF2BP2 Missense_Mutation p.L271V 0.24 tolerated(0.39) benign(0.001) TCGA-43-A56V-01 3 71019906 71019906 G C FOXP1 Missense_Mutation p.P570R 0.37 tolerated(0.16) benign(0.316) TCGA-43-A56V-01 3 75471092 75471092 C T FAM86DP RNA 0.33 TCGA-43-A56V-01 3 97806682 97806682 T C OR5AC2 Silent p.R222R 0.44 TCGA-43-A56V-01 4 114279332 114279332 G T ANK2 Silent p.V3186V 0.30 TCGA-43-A56V-01 4 123663655 123663655 A T BBS12 Missense_Mutation p.Q203L 0.42 tolerated(0.76) benign(0.35) TCGA-43-A56V-01 4 170912975 170912975 C A MFAP3L Missense_Mutation p.G262W 0.36 deleterious(0.04) benign(0.339) TCGA-43-A56V-01 4 183676183 183676183 G T TENM3 Missense_Mutation p.A1555S 0.23 tolerated(0.55) benign(0) TCGA-43-A56V-01 4 39219646 39219646 G T WDR19 Missense_Mutation p.R467L 0.39 deleterious(0.01) benign(0.038) TCGA-43-A56V-01 4 55564718 55564718 G T KIT Silent p.L202L 0.23 TCGA-43-A56V-01 4 5838579 5838579 C T CRMP1 Silent p.K455K 0.38 TCGA-43-A56V-01 4 62813934 62813934 T C LPHN3 Silent p.T847T 0.26 TCGA-43-A56V-01 4 65170917 65170917 A T TECRL Missense_Mutation p.Y233N 0.39 deleterious(0) probably_damaging(0.998) TCGA-43-A56V-01 4 65170918 65170918 G T TECRL Silent p.A232A 0.37 TCGA-43-A56V-01 4 71275267 71275267 T C PROL1 Silent p.S74S 0.47 TCGA-43-A56V-01 4 91229803 91229803 G T CCSER1 Missense_Mutation p.R123L 0.22 deleterious(0) possibly_damaging(0.669) TCGA-43-A56V-01 5 10973545 10973545 G T CTNND2 3'UTR 0.22 TCGA-43-A56V-01 5 115627259 115627259 G T COMMD10 Missense_Mutation p.D186Y 0.22 deleterious(0.01) possibly_damaging(0.776) TCGA-43-A56V-01 5 128301992 128301992 G A SLC27A6 Silent p.V54V 0.30 TCGA-43-A56V-01 5 13923504 13923504 A G DNAH5 Missense_Mutation p.I108T 0.42 benign(0) TCGA-43-A56V-01 5 140201463 140201463 C A PCDHA5 Missense_Mutation p.P35T 0.40 deleterious_low_confidence(0.01) benign(0.33) TCGA-43-A56V-01 5 150656895 150656895 A G SLC36A3 3'Flank 0.35 TCGA-43-A56V-01 5 39393358 39393358 T A DAB2 Nonsense_Mutation p.K77* 0.38 TCGA-43-A56V-01 5 94620097 94620097 C A MCTP1 Silent p.P61P 0.58 TCGA-43-A56V-01 6 112021307 112021307 C A FYN Missense_Mutation p.G288C 0.30 deleterious(0.01) probably_damaging(0.992) TCGA-43-A56V-01 6 112508696 112508696 G A LAMA4 Missense_Mutation p.H308Y 0.18 tolerated(0.55) benign(0.072) TCGA-43-A56V-01 6 116836946 116836946 C T FAM26E Silent p.L242L 0.20 TCGA-43-A56V-01 6 116938449 116938449 T A RSPH4A Silent p.T221T 0.15 TCGA-43-A56V-01 6 118832509 118832509 C A CEP85L Missense_Mutation p.M406I 0.22 tolerated(0.24) benign(0.002) TCGA-43-A56V-01 6 136582412 136582412 C T BCLAF1 Silent p.K916K 0.08 TCGA-43-A56V-01 6 152765600 152765600 C A SYNE1 Missense_Mutation p.K1261N 0.13 benign(0.258) TCGA-43-A56V-01 6 26184236 26184236 C T HIST1H2BE Silent p.F71F 0.33 TCGA-43-A56V-01 6 35610535 35610535 C T FKBP5 Missense_Mutation p.E23K 0.31 tolerated(0.5) benign(0.016) TCGA-43-A56V-01 6 35610537 35610537 C T FKBP5 Missense_Mutation p.G22E 0.31 deleterious(0) probably_damaging(0.986) TCGA-43-A56V-01 6 39832244 39832244 G T DAAM2 Missense_Mutation p.W98C 0.33 deleterious(0) probably_damaging(0.999) TCGA-43-A56V-01 6 49754189 49754189 C T PGK2 Missense_Mutation p.G238S 0.38 deleterious(0.01) probably_damaging(0.925) TCGA-43-A56V-01 6 70991127 70991127 C G COL9A1 Missense_Mutation p.G281A 0.48 unknown(0) TCGA-43-A56V-01 6 73043350 73043350 G T RIMS1 Missense_Mutation p.R1393I 0.40 deleterious(0.02) benign(0.019) TCGA-43-A56V-01 6 76728571 76728571 C A IMPG1 Missense_Mutation p.R224I 0.27 tolerated(0.24) benign(0.025) TCGA-43-A56V-01 6 84627747 84627747 A G CYB5R4 Missense_Mutation p.T157A 0.29 tolerated(0.87) benign(0.001) TCGA-43-A56V-01 6 88767349 88767349 T A SPACA1 Silent p.V95V 0.19 TCGA-43-A56V-01 7 100607885 100607885 G T MUC3A Missense_Mutation p.D678Y 0.17 deleterious(0.01) possibly_damaging(0.876) TCGA-43-A56V-01 7 100682840 100682840 A G MUC17 Missense_Mutation p.T2715A 0.24 unknown(0) TCGA-43-A56V-01 7 100806481 100806481 G T VGF Missense_Mutation p.N548K 0.26 deleterious_low_confidence(0) unknown(0) TCGA-43-A56V-01 7 103151416 103151416 A G RELN Missense_Mutation p.V2719A 0.11 tolerated(0.08) benign(0.097) TCGA-43-A56V-01 7 107692678 107692678 T C LAMB4 Silent p.E1260E 0.27 TCGA-43-A56V-01 7 121718054 121718055 - T AASS Frame_Shift_Ins p.D834Rfs*21 0.24 TCGA-43-A56V-01 7 126079098 126079098 G C GRM8 3'UTR 0.35 TCGA-43-A56V-01 7 136699730 136699730 G A CHRM2 Missense_Mutation p.G40R 0.28 deleterious(0) probably_damaging(1) TCGA-43-A56V-01 7 142378921 142378921 C A MTRNR2L6 3'Flank 0.30 TCGA-43-A56V-01 7 143048785 143048785 G A CLCN1 Silent p.G898G 0.31 TCGA-43-A56V-01 7 150269593 150269593 T A GIMAP4 Silent p.A145A 0.30 TCGA-43-A56V-01 7 154875964 154875964 C A HTR5A Missense_Mutation p.Q281K 0.35 tolerated(1) benign(0.002) TCGA-43-A56V-01 7 31862745 31862745 A G PDE1C Silent p.A568A 0.29 TCGA-43-A56V-01 7 43548658 43548658 A C HECW1 Silent p.A1319A 0.22 TCGA-43-A56V-01 7 72892042 72892042 T C BAZ1B Silent p.Q583Q 0.22 TCGA-43-A56V-01 7 80418669 80418669 C A SEMA3C Missense_Mutation p.R436L 0.19 deleterious(0.05) benign(0.041) TCGA-43-A56V-01 7 82785162 82785162 A C PCLO Silent p.P265P 0.13 TCGA-43-A56V-01 7 90585079 90585079 A C CDK14 Missense_Mutation p.R280S 0.04 deleterious(0) probably_damaging(1) TCGA-43-A56V-01 7 91503933 91503933 C T MTERF Missense_Mutation p.G59S 0.21 tolerated(0.78) benign(0.003) TCGA-43-A56V-01 7 91730334 91730334 A C AKAP9 Missense_Mutation p.Q3687H 0.22 benign(0.019) TCGA-43-A56V-01 7 97851720 97851721 - A TECPR1 Frame_Shift_Ins p.V1015Rfs*9 0.50 TCGA-43-A56V-01 7 98633303 98633303 C A SMURF1 Missense_Mutation p.D642Y 0.33 deleterious(0) probably_damaging(0.991) TCGA-43-A56V-01 8 113504750 113504750 G T CSMD3 Missense_Mutation p.P1749H 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-43-A56V-01 8 131792865 131792865 G T ADCY8 Missense_Mutation p.P1176H 0.06 tolerated(0.06) benign(0.014) TCGA-43-A56V-01 8 139165059 139165059 G T FAM135B Nonsense_Mutation p.Y553* 0.09 TCGA-43-A56V-01 8 144241690 144241690 G C LY6H Intron 0.42 TCGA-43-A56V-01 8 144297310 144297310 C A GPIHBP1 Silent p.R158R 0.53 TCGA-43-A56V-01 8 41504771 41504771 G T NKX6-3 Missense_Mutation p.P35H 0.28 deleterious_low_confidence(0.03) probably_damaging(0.95) TCGA-43-A56V-01 8 73479910 73479910 A G KCNB2 5'UTR 0.37 TCGA-43-A56V-01 8 99170559 99170559 A T POP1 3'UTR 0.58 TCGA-43-A56V-01 9 101767184 101767184 C A COL15A1 Missense_Mutation p.P402Q 0.43 tolerated_low_confidence(0.15) possibly_damaging(0.642) TCGA-43-A56V-01 9 115956437 115956437 T C FKBP15 Missense_Mutation p.R293G 0.36 deleterious(0) possibly_damaging(0.786) TCGA-43-A56V-01 9 139368744 139368744 C T SEC16A Silent p.A1108A 0.50 TCGA-43-A56V-01 9 19520960 19520960 G T SLC24A2 Silent p.A556A 0.31 TCGA-43-A56V-01 9 37744813 37744813 G A FRMPD1 Missense_Mutation p.M928I 0.22 deleterious(0) possibly_damaging(0.78) TCGA-43-A56V-01 9 37854867 37854867 G C DCAF10 Missense_Mutation p.L314F 0.25 deleterious(0.01) probably_damaging(0.994) TCGA-43-A56V-01 9 97522809 97522809 C T C9orf3 Silent p.Y248Y 0.37 TCGA-43-A56V-01 X 100534008 100534008 C T TAF7L Missense_Mutation p.E246K 0.44 tolerated(0.08) benign(0.009) TCGA-43-A56V-01 X 107979559 107979559 A C IRS4 Missense_Mutation p.F6V 0.48 deleterious_low_confidence(0.01) benign(0.275) TCGA-43-A56V-01 X 134483095 134483095 C A ZNF449 Missense_Mutation p.P139T 0.09 tolerated(0.15) benign(0.003) TCGA-43-A56V-01 X 39930385 39930385 C A BCOR Nonsense_Mutation p.E1027* 0.69 TCGA-43-A56V-01 X 41333624 41333624 G T NYX Silent p.A306A 0.39 TCGA-43-A56V-01 X 41333757 41333757 A T NYX Missense_Mutation p.M351L 0.41 tolerated(0.17) benign(0.011) TCGA-43-A56V-01 X 54777725 54777725 G T ITIH6 Silent p.V1147V 0.41 TCGA-43-A56V-01 X 54817469 54817469 G T ITIH6 Silent p.G139G 0.65 TCGA-43-A56V-01 X 63411821 63411821 G A AMER1 Missense_Mutation p.A449V 0.44 tolerated(0.07) benign(0.008) TCGA-43-A56V-01 X 82764325 82764325 A G POU3F4 Silent p.Q331Q 0.24 TCGA-46-3765-01 10 101996952 101996952 A G CWF19L1 Intron 0.13 TCGA-46-3765-01 10 102120670 102120670 G C SCD Missense_Mutation p.G354R 0.33 deleterious(0.01) possibly_damaging(0.847) TCGA-46-3765-01 10 102120671 102120671 G T SCD Missense_Mutation p.G354V 0.33 deleterious(0) probably_damaging(0.915) TCGA-46-3765-01 10 118321053 118321053 G A PNLIP Silent p.Q413Q 0.35 TCGA-46-3765-01 10 15107717 15107717 C T OLAH Silent p.I232I 0.11 TCGA-46-3765-01 10 18284589 18284589 G T SLC39A12 Missense_Mutation p.S513I 0.10 tolerated(0.16) possibly_damaging(0.723) TCGA-46-3765-01 10 21108409 21108409 C A NEBL Missense_Mutation p.V667L 0.16 tolerated(0.32) benign(0.004) TCGA-46-3765-01 10 50819834 50819835 GC - SLC18A3 Frame_Shift_Del p.R351Lfs*98 0.34 TCGA-46-3765-01 10 5959446 5959446 G A FBXO18 Missense_Mutation p.E669K 0.30 tolerated(1) benign(0.025) TCGA-46-3765-01 10 6263484 6263484 C T PFKFB3 Silent p.I324I 0.35 TCGA-46-3765-01 10 70253288 70253288 A T SLC25A16 Missense_Mutation p.V154D 0.22 deleterious(0) probably_damaging(0.994) TCGA-46-3765-01 10 73521605 73521605 C T C10orf54 Silent p.R87R 0.19 TCGA-46-3765-01 10 98715105 98715105 A G LCOR Missense_Mutation p.K243R 0.36 tolerated(0.89) possibly_damaging(0.636) TCGA-46-3765-01 11 121460075 121460075 G C SORL1 Missense_Mutation p.D1352H 0.25 deleterious(0) probably_damaging(1) TCGA-46-3765-01 11 128839232 128839232 G A ARHGAP32 Missense_Mutation p.S1945F 0.25 tolerated_low_confidence(0.35) benign(0.004) TCGA-46-3765-01 11 132290039 132290039 C T OPCML 3'UTR 0.25 TCGA-46-3765-01 11 134114844 134114844 C T VPS26B Missense_Mutation p.P245L 0.11 deleterious(0) probably_damaging(0.992) TCGA-46-3765-01 11 1651586 1651615 CTGCTGCCAGTCCAGCTGCTGTAAGCCTTA - KRTAP5-5 In_Frame_Del p.Y192_P201del 0.55 TCGA-46-3765-01 11 26619981 26619981 G T ANO3 Missense_Mutation p.W506L 0.28 tolerated(0.16) probably_damaging(0.999) TCGA-46-3765-01 11 45274068 45274068 G A SYT13 Silent p.S250S 0.25 TCGA-46-3765-01 11 47073976 47073976 C T C11orf49 Nonsense_Mutation p.R63* 0.30 TCGA-46-3765-01 11 5345277 5345277 C A OR51B2 Missense_Mutation p.W84L 0.22 tolerated(0.26) benign(0.02) TCGA-46-3765-01 11 55136361 55136361 A C OR4A15 Silent p.V334V 0.19 TCGA-46-3765-01 11 55563596 55563596 G C OR5D14 Missense_Mutation p.V189L 0.18 tolerated(0.94) benign(0.075) TCGA-46-3765-01 11 55587562 55587562 G A OR5D18 Missense_Mutation p.G153R 0.12 deleterious(0) probably_damaging(0.946) TCGA-46-3765-01 11 59282973 59282973 G T OR4D9 Missense_Mutation p.E196D 0.17 deleterious(0.01) probably_damaging(0.98) TCGA-46-3765-01 11 63994119 63994119 C G NUDT22 5'UTR 0.40 TCGA-46-3765-01 11 68840410 68840410 C T TPCN2 Missense_Mutation p.L391F 0.28 tolerated(0.08) possibly_damaging(0.835) TCGA-46-3765-01 11 72145604 72145604 C G CLPB 5'UTR 0.36 TCGA-46-3765-01 11 77921353 77921353 A T USP35 Missense_Mutation p.M818L 0.24 tolerated(1) benign(0.376) TCGA-46-3765-01 11 7981752 7981752 G A NLRP10 Silent p.F469F 0.14 TCGA-46-3765-01 11 92531931 92531931 C G FAT3 Missense_Mutation p.L1918V 0.28 possibly_damaging(0.606) TCGA-46-3765-01 11 92533017 92533017 G T FAT3 Missense_Mutation p.V2280L 0.24 benign(0.05) TCGA-46-3765-01 11 94759401 94759401 T A KDM4E Missense_Mutation p.L227H 0.26 deleterious(0.02) benign(0.102) TCGA-46-3765-01 12 103696309 103696309 G A C12orf42 Silent p.I220I 0.12 TCGA-46-3765-01 12 111749903 111749903 G - CUX2 Splice_Site p.X634_splice 0.15 TCGA-46-3765-01 12 121434449 121434449 A T HNF1A Missense_Mutation p.M405L 0.19 deleterious(0.01) probably_damaging(0.984) TCGA-46-3765-01 12 32490544 32490544 C G BICD1 Silent p.L788L 0.23 TCGA-46-3765-01 12 40422151 40422151 C T SLC2A13 Missense_Mutation p.D293N 0.26 tolerated(0.28) benign(0.101) TCGA-46-3765-01 12 48360006 48360006 G T TMEM106C Missense_Mutation p.E182D 0.18 tolerated(0.57) benign(0.016) TCGA-46-3765-01 12 4920817 4920817 C A KCNA6 3'UTR 0.37 TCGA-46-3765-01 12 49446494 49446494 T A KMT2D Splice_Site p.X371_splice 0.32 TCGA-46-3765-01 12 49491879 49491879 C A LMBR1L Missense_Mutation p.R417L 0.28 deleterious(0.03) possibly_damaging(0.517) TCGA-46-3765-01 12 53516877 53516877 C T SOAT2 Missense_Mutation p.R417W 0.39 deleterious(0) probably_damaging(0.93) TCGA-46-3765-01 12 53565707 53565707 G A CSAD Missense_Mutation p.A164V 0.19 deleterious(0.02) benign(0.053) TCGA-46-3765-01 12 54792386 54792386 G T ITGA5 Missense_Mutation p.R980S 0.29 tolerated(0.41) benign(0.001) TCGA-46-3765-01 12 66725230 66725230 C T HELB Silent p.V989V 0.18 TCGA-46-3765-01 12 70928645 70928645 C T PTPRB Missense_Mutation p.E2058K 0.28 deleterious(0) probably_damaging(0.997) TCGA-46-3765-01 12 78400703 78400703 T A NAV3 Nonsense_Mutation p.L462* 0.28 TCGA-46-3765-01 12 99007382 99007382 T C IKBIP Missense_Mutation p.H345R 0.27 tolerated(0.34) benign(0.013) TCGA-46-3765-01 13 114149892 114149892 G T TMCO3 5'UTR 0.14 TCGA-46-3765-01 13 114781703 114781703 C T RASA3 Silent p.L417L 0.20 TCGA-46-3765-01 13 115091231 115091231 A T CHAMP1 Missense_Mutation p.K638N 0.12 tolerated(0.22) possibly_damaging(0.492) TCGA-46-3765-01 13 25670378 25670378 C G PABPC3 Nonsense_Mutation p.Y14* 0.29 TCGA-46-3765-01 13 26620919 26620919 C A SHISA2 Missense_Mutation p.C207F 0.19 deleterious(0) probably_damaging(0.989) TCGA-46-3765-01 13 28919617 28919617 G T FLT1 Missense_Mutation p.L774I 0.33 tolerated(0.3) probably_damaging(0.954) TCGA-46-3765-01 13 32709039 32709039 A T FRY Splice_Site p.X296_splice 0.28 TCGA-46-3765-01 13 33344601 33344601 G T PDS5B Missense_Mutation p.A1323S 0.16 tolerated_low_confidence(0.24) benign(0.003) TCGA-46-3765-01 13 38210967 38210967 T G TRPC4 3'UTR 0.14 TCGA-46-3765-01 13 70681347 70681347 C G KLHL1 Missense_Mutation p.G162A 0.36 tolerated_low_confidence(0.79) benign(0.004) TCGA-46-3765-01 13 96086185 96086185 G A CLDN10 Missense_Mutation p.R33Q 0.19 tolerated(0.08) possibly_damaging(0.666) TCGA-46-3765-01 14 52520558 52520558 C G NID2 Missense_Mutation p.E390Q 0.31 tolerated(0.57) benign(0.007) TCGA-46-3765-01 14 69341521 69341521 C T ACTN1 3'UTR 0.40 TCGA-46-3765-01 14 88945368 88945368 T A PTPN21 Missense_Mutation p.T803S 0.27 tolerated_low_confidence(0.2) benign(0.017) TCGA-46-3765-01 14 94008943 94008943 G A UNC79 Silent p.L375L 0.23 TCGA-46-3765-01 15 100332419 100332419 C A AC090825.1 5'Flank 0.21 TCGA-46-3765-01 15 23811260 23811260 G T MKRN3 Nonsense_Mutation p.E111* 0.41 TCGA-46-3765-01 15 25488797 25488797 A T SNORD115-40 RNA 0.09 TCGA-46-3765-01 15 43527770 43527770 C A TGM5 Missense_Mutation p.K537N 0.32 deleterious(0.03) probably_damaging(1) TCGA-46-3765-01 15 51676070 51676070 T C GLDN Silent p.N174N 0.40 TCGA-46-3765-01 15 71302258 71302258 A G LRRC49 Missense_Mutation p.N512S 0.34 tolerated(0.81) benign(0.001) TCGA-46-3765-01 15 77471444 77471444 T A PEAK1 Missense_Mutation p.D942V 0.23 deleterious(0.03) benign(0.19) TCGA-46-3765-01 15 86124952 86124952 C T AKAP13 Missense_Mutation p.A1218V 0.11 tolerated_low_confidence(0.1) benign(0.003) TCGA-46-3765-01 15 86125189 86125189 C T AKAP13 Missense_Mutation p.T1297I 0.13 deleterious_low_confidence(0.05) benign(0.076) TCGA-46-3765-01 16 29997772 29997772 G T TAOK2 Nonsense_Mutation p.E727* 0.11 TCGA-46-3765-01 16 31008036 31008036 C G STX1B Missense_Mutation p.E169Q 0.18 deleterious(0.02) possibly_damaging(0.519) TCGA-46-3765-01 16 4871572 4871572 C T GLYR1 Silent p.T236T 0.15 TCGA-46-3765-01 16 67286512 67286512 G A SLC9A5 Silent p.L85L 0.31 TCGA-46-3765-01 16 723528 723528 G T RHOT2 Silent p.G593G 0.22 TCGA-46-3765-01 16 75186816 75186816 C T ZFP1 5'UTR 0.24 TCGA-46-3765-01 16 83378554 83378554 C A CDH13 Silent p.R289R 0.24 TCGA-46-3765-01 16 89702987 89702987 C T DPEP1 Silent p.G139G 0.35 TCGA-46-3765-01 17 33513623 33513623 A T UNC45B 3'UTR 0.24 TCGA-46-3765-01 17 39190915 39190915 A G KRTAP1-3 Silent p.S53S 0.35 TCGA-46-3765-01 17 46135698 46135698 T C NFE2L1 Silent p.S338S 0.23 TCGA-46-3765-01 17 46629668 46629668 G - HOXB3 Frame_Shift_Del p.L57Wfs*18 0.12 TCGA-46-3765-01 17 46847099 46847099 T C TTLL6 Missense_Mutation p.N801D 0.17 tolerated(0.26) benign(0.005) TCGA-46-3765-01 17 47583905 47583905 C T NGFR Silent p.D151D 0.38 TCGA-46-3765-01 17 47589302 47589302 G A NGFR Silent p.V290V 0.24 TCGA-46-3765-01 17 58286791 58286791 T G USP32 Missense_Mutation p.E846D 0.12 tolerated(0.54) benign(0.009) TCGA-46-3765-01 17 59821886 59821886 T C BRIP1 Missense_Mutation p.T722A 0.21 tolerated(0.1) probably_damaging(0.919) TCGA-46-3765-01 17 60813646 60813646 T C MARCH10 Missense_Mutation p.H528R 0.20 deleterious(0.05) benign(0.022) TCGA-46-3765-01 17 66252992 66252992 C T AMZ2 Missense_Mutation p.T322I 0.10 tolerated(0.27) benign(0.002) TCGA-46-3765-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.46 tolerated(0.13) possibly_damaging(0.631) TCGA-46-3765-01 17 78348267 78348267 C A RNF213 Missense_Mutation p.Q4318K 0.19 benign(0) TCGA-46-3765-01 17 78355400 78355400 G A RNF213 Silent p.Q4617Q 0.32 TCGA-46-3765-01 18 31323263 31323263 A G ASXL3 Missense_Mutation p.K1151E 0.23 probably_damaging(0.997) TCGA-46-3765-01 18 31325671 31325671 G T ASXL3 Missense_Mutation p.K1953N 0.15 probably_damaging(0.999) TCGA-46-3765-01 18 31325735 31325735 G C ASXL3 Missense_Mutation p.V1975L 0.14 benign(0.062) TCGA-46-3765-01 18 54424511 54424511 C G WDR7 Missense_Mutation p.S896C 0.32 deleterious(0) probably_damaging(0.998) TCGA-46-3765-01 18 64172361 64172361 C G CDH19 Missense_Mutation p.K669N 0.09 tolerated(0.06) benign(0.306) TCGA-46-3765-01 18 67992319 67992319 C T SOCS6 Silent p.L139L 0.12 TCGA-46-3765-01 18 70205487 70205487 A G CBLN2 Missense_Mutation p.L200P 0.23 deleterious(0) probably_damaging(1) TCGA-46-3765-01 19 15838833 15838833 C A OR10H2 5'Flank 0.32 TCGA-46-3765-01 19 17327016 17327016 G T USE1 Silent p.L90L 0.28 TCGA-46-3765-01 19 17327017 17327017 G T USE1 Missense_Mutation p.A91S 0.32 tolerated(0.23) benign(0.039) TCGA-46-3765-01 19 22940797 22940797 T C ZNF99 Silent p.K638K 0.23 TCGA-46-3765-01 19 23544231 23544231 G C ZNF91 Missense_Mutation p.P517R 0.15 deleterious(0.02) probably_damaging(0.996) TCGA-46-3765-01 19 23578154 23578154 C G ZNF91 Translation_Start_Site p.M1? 0.20 tolerated_low_confidence(0.28) benign(0.019) TCGA-46-3765-01 19 30934469 30934469 G A ZNF536 Intron 0.20 TCGA-46-3765-01 19 35849930 35849930 C T FFAR3 Silent p.R46R 0.09 TCGA-46-3765-01 19 40478439 40478439 C T PSMC4 Missense_Mutation p.T100I 0.23 tolerated(0.1) benign(0.187) TCGA-46-3765-01 19 42342205 42342205 G A LYPD4 Silent p.L114L 0.22 TCGA-46-3765-01 19 42794659 42794659 G C CIC Missense_Mutation p.G580A 0.32 probably_damaging(0.981) TCGA-46-3765-01 19 47823500 47823500 G T C5AR1 Missense_Mutation p.A156S 0.20 deleterious(0.01) probably_damaging(0.928) TCGA-46-3765-01 19 48737714 48737714 G A CARD8 Missense_Mutation p.P99L 0.22 deleterious(0.01) benign(0.018) TCGA-46-3765-01 19 53958064 53958064 G T ZNF761 RNA 0.28 TCGA-46-3765-01 19 54313983 54313983 C T NLRP12 Nonsense_Mutation p.W310* 0.27 TCGA-46-3765-01 19 57037235 57037235 A T ZNF471 Missense_Mutation p.Q600L 0.32 deleterious(0.03) benign(0.062) TCGA-46-3765-01 19 57328304 57328304 C - PEG3 Frame_Shift_Del p.K503Nfs*76 0.19 TCGA-46-3765-01 19 57328739 57328739 C A PEG3 Missense_Mutation p.R357S 0.28 deleterious(0) probably_damaging(0.928) TCGA-46-3765-01 19 57641512 57641512 A C USP29 Missense_Mutation p.K490T 0.14 deleterious(0.02) benign(0.15) TCGA-46-3765-01 19 58099930 58099930 C A ZIK1 Silent p.I32I 0.27 TCGA-46-3765-01 19 7688675 7688675 G A XAB2 Missense_Mutation p.P354L 0.22 deleterious(0) probably_damaging(1) TCGA-46-3765-01 19 8201158 8201158 C A FBN3 Missense_Mutation p.G461C 0.36 deleterious(0) probably_damaging(1) TCGA-46-3765-01 19 9070727 9070727 C T MUC16 Silent p.G5573G 0.08 TCGA-46-3765-01 19 9578468 9578468 G T ZNF560 Missense_Mutation p.F385L 0.15 deleterious(0.01) possibly_damaging(0.787) TCGA-46-3765-01 1 109883449 109883449 G A SORT1 Silent p.S387S 0.15 TCGA-46-3765-01 1 110033990 110033990 C T ATXN7L2 Missense_Mutation p.S602L 0.17 deleterious_low_confidence(0.05) benign(0.102) TCGA-46-3765-01 1 111216270 111216270 C G KCNA3 Missense_Mutation p.G388R 0.15 deleterious(0) probably_damaging(1) TCGA-46-3765-01 1 150131510 150131510 G C PLEKHO1 Missense_Mutation p.R341P 0.15 tolerated(0.28) benign(0.09) TCGA-46-3765-01 1 151372089 151372089 C T PSMB4 Missense_Mutation p.S9F 0.16 tolerated(0.73) benign(0) TCGA-46-3765-01 1 152276145 152276145 G A FLG Silent p.H3739H 0.38 TCGA-46-3765-01 1 152326835 152326835 G C FLG2 Missense_Mutation p.Q1143E 0.13 unknown(0) TCGA-46-3765-01 1 153084896 153084896 C T SPRR2F 3'UTR 0.39 TCGA-46-3765-01 1 156503909 156503909 C T IQGAP3 Silent p.Q1255Q 0.11 TCGA-46-3765-01 1 157771327 157771327 G T FCRL1 Silent p.V309V 0.30 TCGA-46-3765-01 1 161518412 161518412 T A FCGR3A Nonsense_Mutation p.K76* 0.20 TCGA-46-3765-01 1 169356240 169356240 A G BLZF1 Silent p.L341L 0.10 TCGA-46-3765-01 1 169890752 169890753 - A KIFAP3 3'UTR 0.53 TCGA-46-3765-01 1 179503957 179503957 A T AXDND1 Missense_Mutation p.E964V 0.11 deleterious(0) possibly_damaging(0.788) TCGA-46-3765-01 1 198509707 198509707 G C ATP6V1G3 Missense_Mutation p.A25G 0.23 deleterious(0.04) probably_damaging(0.999) TCGA-46-3765-01 1 203741202 203741202 A G LAX1 Missense_Mutation p.H106R 0.32 tolerated(0.66) benign(0.26) TCGA-46-3765-01 1 216246553 216246553 G T USH2A Missense_Mutation p.L1888M 0.12 possibly_damaging(0.718) TCGA-46-3765-01 1 218458651 218458651 G T RRP15 5'UTR 0.41 TCGA-46-3765-01 1 220287687 220287687 G T IARS2 Missense_Mutation p.G504V 0.32 tolerated(0.17) benign(0.1) TCGA-46-3765-01 1 220324712 220324713 - A RAB3GAP2 Frame_Shift_Ins p.A1355Cfs*5 0.25 TCGA-46-3765-01 1 222717191 222717191 G C HHIPL2 Missense_Mutation p.S221C 0.29 tolerated(0.06) benign(0.089) TCGA-46-3765-01 1 233497839 233497839 T G MLK4 Missense_Mutation p.L451R 0.29 tolerated(0.06) probably_damaging(0.997) TCGA-46-3765-01 1 240966246 240966246 T A RGS7 Silent p.I439I 0.37 TCGA-46-3765-01 1 241033393 241033393 G T RGS7 Missense_Mutation p.Q138K 0.32 deleterious(0.03) probably_damaging(0.937) TCGA-46-3765-01 1 247588746 247588746 C A NLRP3 Silent p.S667S 0.12 TCGA-46-3765-01 1 248263099 248263099 T A OR2L13 Missense_Mutation p.V141E 0.24 deleterious(0.02) possibly_damaging(0.557) TCGA-46-3765-01 1 248367107 248367107 G T OR2M3 Missense_Mutation p.L246F 0.12 deleterious(0.01) benign(0.113) TCGA-46-3765-01 1 248814146 248814146 G A OR2T27 Missense_Mutation p.L14F 0.17 tolerated(0.06) benign(0.047) TCGA-46-3765-01 1 48701497 48701497 T C SLC5A9 Missense_Mutation p.V438A 0.31 deleterious(0) benign(0.37) TCGA-46-3765-01 1 55572963 55572963 G A USP24 Missense_Mutation p.R1571C 0.28 deleterious(0) probably_damaging(0.976) TCGA-46-3765-01 1 89579960 89579960 C T GBP2 Silent p.L296L 0.17 TCGA-46-3765-01 20 30193986 30193986 C G ID1 3'UTR 0.45 TCGA-46-3765-01 20 33623108 33623108 G T TRPC4AP Missense_Mutation p.A290D 0.37 deleterious(0.03) benign(0.146) TCGA-46-3765-01 20 62737703 62737703 C T NPBWR2 Missense_Mutation p.R161Q 0.53 tolerated(0.14) possibly_damaging(0.51) TCGA-46-3765-01 21 10920107 10920107 G A TPTE Nonsense_Mutation p.Q383* 0.08 TCGA-46-3765-01 21 10996029 10996029 T C TPTE RNA 0.19 TCGA-46-3765-01 22 16287406 16287406 G T POTEH Nonsense_Mutation p.Y160* 0.35 TCGA-46-3765-01 22 22599440 22599440 G A VPREB1 Silent p.L43L 0.11 TCGA-46-3765-01 22 34157471 34157471 G A LARGE 5'UTR 0.26 TCGA-46-3765-01 2 121744022 121744022 C A GLI2 Missense_Mutation p.L709M 0.09 tolerated(0.13) possibly_damaging(0.779) TCGA-46-3765-01 2 131103469 131103469 T C IMP4 Missense_Mutation p.L186P 0.14 deleterious(0) probably_damaging(0.998) TCGA-46-3765-01 2 131103470 131103470 C T IMP4 Silent p.L186L 0.14 TCGA-46-3765-01 2 141081591 141081591 A T LRP1B Missense_Mutation p.Y4129N 0.49 possibly_damaging(0.485) TCGA-46-3765-01 2 171822450 171822450 C G GORASP2 Missense_Mutation p.T390S 0.16 tolerated_low_confidence(0.41) possibly_damaging(0.636) TCGA-46-3765-01 2 178098957 178098957 G A NFE2L2 Missense_Mutation p.L30F 0.09 deleterious(0) probably_damaging(1) TCGA-46-3765-01 2 179416982 179416982 G T TTN Silent p.V30215V 0.08 TCGA-46-3765-01 2 179438954 179438954 C A TTN Nonsense_Mutation p.G23969* 0.14 TCGA-46-3765-01 2 179604870 179604870 C T TTN Missense_Mutation p.V4364M 0.16 TCGA-46-3765-01 2 179614291 179614291 C A TTN Intron 0.19 TCGA-46-3765-01 2 186672861 186672861 T C FSIP2 Silent p.G6365G 0.28 TCGA-46-3765-01 2 191117026 191117026 G T HIBCH Missense_Mutation p.F175L 0.39 deleterious(0) probably_damaging(0.969) TCGA-46-3765-01 2 196636525 196636525 G A DNAH7 Silent p.F3764F 0.09 TCGA-46-3765-01 2 197541356 197541356 G A CCDC150 Silent p.E447E 0.25 TCGA-46-3765-01 2 198948853 198948853 T G PLCL1 Silent p.V204V 0.12 TCGA-46-3765-01 2 201337626 201337626 G T SPATS2L Missense_Mutation p.A378S 0.08 tolerated(0.65) benign(0.003) TCGA-46-3765-01 2 201507519 201507519 G C AOX1 Missense_Mutation p.E948Q 0.12 deleterious(0.02) benign(0.367) TCGA-46-3765-01 2 210557999 210557999 G A MAP2 Missense_Mutation p.E369K 0.14 deleterious_low_confidence(0.04) benign(0.405) TCGA-46-3765-01 2 212251789 212251789 T G ERBB4 Missense_Mutation p.E1090D 0.07 tolerated(0.3) benign(0.2) TCGA-46-3765-01 2 21255260 21255260 C A APOB Missense_Mutation p.A440S 0.42 probably_damaging(0.998) TCGA-46-3765-01 2 29296003 29296003 T C C2orf71 Silent p.P375P 0.25 TCGA-46-3765-01 2 73678881 73678881 C T ALMS1 Nonsense_Mutation p.Q1742* 0.08 TCGA-46-3765-01 2 84775477 84775477 G T DNAH6 Missense_Mutation p.D418Y 0.33 deleterious(0) benign(0.017) TCGA-46-3765-01 2 88885387 88885387 C T EIF2AK3 Missense_Mutation p.R541H 0.25 deleterious(0.05) benign(0.009) TCGA-46-3765-01 2 98412760 98412760 A C TMEM131 Missense_Mutation p.C1041G 0.36 deleterious(0) probably_damaging(0.996) TCGA-46-3765-01 3 107096405 107096405 A T CCDC54 5'UTR 0.09 TCGA-46-3765-01 3 121973103 121973103 G A CASR Missense_Mutation p.D23N 0.22 tolerated(0.6) benign(0.002) TCGA-46-3765-01 3 122331967 122331967 G C PARP15 Missense_Mutation p.G208A 0.25 deleterious(0.03) benign(0.013) TCGA-46-3765-01 3 15116107 15116107 C T ZFYVE20 Missense_Mutation p.E513K 0.46 deleterious(0.04) benign(0.059) TCGA-46-3765-01 3 169513156 169513156 A T LRRC34 Intron 0.53 TCGA-46-3765-01 3 183903927 183903927 G C ABCF3 5'UTR 0.14 TCGA-46-3765-01 3 185635358 185635358 C T TRA2B 3'UTR 0.53 TCGA-46-3765-01 3 191093125 191093125 C G CCDC50 Missense_Mutation p.I241M 0.44 deleterious(0.03) probably_damaging(0.974) TCGA-46-3765-01 3 62452069 62452069 A G CADPS Missense_Mutation p.I1166T 0.39 tolerated(0.2) benign(0.152) TCGA-46-3765-01 3 67426195 67426195 C A SUCLG2 Intron 0.43 TCGA-46-3765-01 3 72971411 72971411 C T GXYLT2 Silent p.I175I 0.33 TCGA-46-3765-01 3 89521662 89521662 C T EPHA3 Silent p.F913F 0.22 TCGA-46-3765-01 4 121966917 121966917 C T NDNF Missense_Mutation p.D26N 0.42 tolerated(0.14) possibly_damaging(0.729) TCGA-46-3765-01 4 122782823 122782823 C A BBS7 Missense_Mutation p.K59N 0.36 deleterious(0.02) probably_damaging(0.978) TCGA-46-3765-01 4 123246404 123246404 G A KIAA1109 Missense_Mutation p.E3642K 0.13 benign(0.437) TCGA-46-3765-01 4 13604824 13604824 C G BOD1L1 Missense_Mutation p.D1234H 0.27 probably_damaging(0.955) TCGA-46-3765-01 4 164393214 164393214 C G TKTL2 Missense_Mutation p.G558A 0.31 tolerated(0.08) probably_damaging(0.971) TCGA-46-3765-01 4 164393215 164393215 C A TKTL2 Missense_Mutation p.G558C 0.29 tolerated(0.12) probably_damaging(0.999) TCGA-46-3765-01 4 16900050 16900050 C G LDB2 Missense_Mutation p.R20T 0.13 deleterious(0) probably_damaging(0.999) TCGA-46-3765-01 4 175899130 175899130 G A ADAM29 Silent p.T818T 0.17 TCGA-46-3765-01 4 186545420 186545420 C A SORBS2 Missense_Mutation p.C484F 0.29 deleterious(0) benign(0.347) TCGA-46-3765-01 4 74301996 74301996 C T AFP Missense_Mutation p.S6L 0.13 tolerated(1) benign(0.018) TCGA-46-3765-01 4 74302032 74302032 C G AFP Missense_Mutation p.S18C 0.14 deleterious(0.05) benign(0.01) TCGA-46-3765-01 4 75312365 75312365 C T AREG Missense_Mutation p.S59L 0.58 tolerated(0.09) benign(0.006) TCGA-46-3765-01 4 87690984 87690984 G A PTPN13 Missense_Mutation p.E1523K 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-46-3765-01 4 89317227 89317227 C A HERC6 Missense_Mutation p.P274T 0.26 tolerated(0.54) benign(0.038) TCGA-46-3765-01 5 126734484 126734484 G T MEGF10 Missense_Mutation p.W259L 0.51 deleterious(0) benign(0.169) TCGA-46-3765-01 5 126769147 126769147 G T MEGF10 Missense_Mutation p.D596Y 0.38 deleterious(0) probably_damaging(0.987) TCGA-46-3765-01 5 140181452 140181452 G A PCDHA3 Missense_Mutation p.G224S 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.907) TCGA-46-3765-01 5 140255775 140255775 C T PCDHA12 Missense_Mutation p.P240S 0.25 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-46-3765-01 5 145428766 145428766 G T SH3RF2 Missense_Mutation p.R427L 0.41 tolerated(0.1) probably_damaging(0.922) TCGA-46-3765-01 5 147023671 147023671 G C JAKMIP2 Missense_Mutation p.L392V 0.35 deleterious(0.02) probably_damaging(0.969) TCGA-46-3765-01 5 33947345 33947345 A G SLC45A2 Missense_Mutation p.F431L 0.15 tolerated(0.13) benign(0.434) TCGA-46-3765-01 5 36677103 36677103 G A SLC1A3 Missense_Mutation p.R226Q 0.09 tolerated(0.3) benign(0.009) TCGA-46-3765-01 5 37017247 37017247 G A NIPBL Missense_Mutation p.E1635K 0.15 deleterious(0.04) benign(0.013) TCGA-46-3765-01 5 45461983 45461983 G T HCN1 Missense_Mutation p.P326T 0.62 deleterious(0) possibly_damaging(0.575) TCGA-46-3765-01 5 82850838 82850838 G C VCAN Missense_Mutation p.W3239S 0.26 deleterious(0) probably_damaging(1) TCGA-46-3765-01 6 110763720 110763720 C T SLC22A16 Missense_Mutation p.A304T 0.22 tolerated(0.09) probably_damaging(0.951) TCGA-46-3765-01 6 129929122 129929122 C G ARHGAP18 Missense_Mutation p.A400P 0.16 deleterious(0) probably_damaging(0.993) TCGA-46-3765-01 6 139094876 139094876 C A CCDC28A Missense_Mutation p.A22E 0.20 tolerated_low_confidence(0.1) benign(0.162) TCGA-46-3765-01 6 152861157 152861157 C A SYNE1 Splice_Site p.X23_splice 0.26 TCGA-46-3765-01 6 161007644 161007644 G T LPA Nonsense_Mutation p.Y1322* 0.11 TCGA-46-3765-01 6 161966334 161966334 G T PARK2 Intron 0.38 TCGA-46-3765-01 6 26056651 26056651 G A HIST1H1C Silent p.S2S 0.43 TCGA-46-3765-01 6 26390287 26390287 C T BTN2A2 Missense_Mutation p.T260I 0.14 tolerated(0.62) benign(0.008) TCGA-46-3765-01 6 29274478 29274478 G C OR14J1 Missense_Mutation p.L4F 0.29 tolerated(0.97) benign(0.004) TCGA-46-3765-01 6 30954884 30954884 G T MUC21 Missense_Mutation p.G311V 0.18 tolerated(0.09) unknown(0) TCGA-46-3765-01 6 33411229 33411229 G A SYNGAP1 Missense_Mutation p.R967Q 0.20 tolerated(0.75) benign(0.103) TCGA-46-3765-01 6 34498116 34498116 G A PACSIN1 Missense_Mutation p.M295I 0.44 deleterious(0.01) probably_damaging(0.974) TCGA-46-3765-01 6 36714347 36714347 G A CPNE5 Silent p.P342P 0.23 TCGA-46-3765-01 6 43534990 43534990 G T XPO5 Silent p.L250L 0.20 TCGA-46-3765-01 6 74440235 74440235 C T CD109 Missense_Mutation p.R149C 0.15 deleterious(0) probably_damaging(1) TCGA-46-3765-01 6 83075567 83075567 G A TPBG Missense_Mutation p.V297I 0.24 tolerated(0.06) benign(0.313) TCGA-46-3765-01 6 87967475 87967475 C A ZNF292 Silent p.I1376I 0.26 TCGA-46-3765-01 7 106836436 106836436 T A HBP1 Missense_Mutation p.S409T 0.38 tolerated(0.13) benign(0.007) TCGA-46-3765-01 7 1131687 1131687 T A GPER1 Missense_Mutation p.L108Q 0.10 deleterious(0) probably_damaging(1) TCGA-46-3765-01 7 123109370 123109370 G A IQUB Silent p.I493I 0.39 TCGA-46-3765-01 7 127637709 127637709 C T SND1 Intron 0.36 TCGA-46-3765-01 7 138429990 138429990 G A ATP6V0A4 Silent p.I452I 0.34 TCGA-46-3765-01 7 142723284 142723284 C G OR9A2 3'UTR 0.21 TCGA-46-3765-01 7 143701805 143701805 G A OR6B1 Missense_Mutation p.C239Y 0.26 deleterious(0) probably_damaging(1) TCGA-46-3765-01 7 19156538 19156538 G T TWIST1 Missense_Mutation p.P136H 0.39 deleterious(0) probably_damaging(1) TCGA-46-3765-01 7 33054270 33054270 C T NT5C3A 3'UTR 0.29 TCGA-46-3765-01 7 44556482 44556482 G C NPC1L1 Silent p.L1140L 0.19 TCGA-46-3765-01 7 45112369 45112369 G T CCM2 Nonsense_Mutation p.E285* 0.28 TCGA-46-3765-01 7 4831000 4831000 G A AP5Z1 Missense_Mutation p.G803D 0.29 tolerated(0.05) possibly_damaging(0.856) TCGA-46-3765-01 7 5781325 5781325 C G RNF216 Missense_Mutation p.S108T 0.21 tolerated_low_confidence(0.54) benign(0.022) TCGA-46-3765-01 7 6054848 6054848 G C AIMP2 Missense_Mutation p.L69F 0.20 deleterious(0) probably_damaging(1) TCGA-46-3765-01 7 62752319 62752319 A T ZNF733P RNA 0.11 TCGA-46-3765-01 7 66103967 66103967 C G KCTD7 Silent p.L206L 0.89 TCGA-46-3765-01 7 92935226 92935226 G T CCDC132 Missense_Mutation p.L513F 0.32 tolerated(0.62) benign(0.012) TCGA-46-3765-01 7 96639256 96639256 C T DLX6 Missense_Mutation p.S260L 0.55 deleterious(0.01) benign(0.09) TCGA-46-3765-01 8 110100339 110100339 T C TRHR Missense_Mutation p.Y200H 0.22 deleterious(0) probably_damaging(0.998) TCGA-46-3765-01 8 113303805 113303805 A T CSMD3 Missense_Mutation p.F2970I 0.22 tolerated(0.1) possibly_damaging(0.488) TCGA-46-3765-01 8 141678480 141678480 T C PTK2 Missense_Mutation p.D931G 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-46-3765-01 8 145667759 145667759 G C TONSL Silent p.R205R 0.17 TCGA-46-3765-01 8 31015003 31015003 G C WRN Missense_Mutation p.Q1313H 0.49 deleterious(0.04) benign(0.062) TCGA-46-3765-01 8 35608161 35608161 G T UNC5D Missense_Mutation p.C666F 0.71 deleterious(0) probably_damaging(0.999) TCGA-46-3765-01 8 35624481 35624481 T C UNC5D Missense_Mutation p.L792P 0.10 deleterious(0) probably_damaging(0.999) TCGA-46-3765-01 8 39495087 39495087 T C ADAM18 Missense_Mutation p.L231P 0.18 deleterious(0) probably_damaging(0.995) TCGA-46-3765-01 8 41804152 41804152 A C KAT6A Silent p.P651P 0.15 TCGA-46-3765-01 8 52387662 52387662 C T PXDNL Silent p.L188L 0.14 TCGA-46-3765-01 8 69002947 69002947 G T PREX2 Silent p.T749T 0.24 TCGA-46-3765-01 8 69002948 69002948 A T PREX2 Nonsense_Mutation p.K750* 0.23 TCGA-46-3765-01 8 87751931 87751931 T A CNGB3 Missense_Mutation p.T55S 0.26 tolerated(0.32) benign(0.003) TCGA-46-3765-01 8 87917412 87917412 G T CNBD1 Nonsense_Mutation p.E88* 0.31 TCGA-46-3765-01 8 94828702 94828702 A G TMEM67 3'UTR 0.25 TCGA-46-3765-01 9 100232913 100232913 G A TDRD7 Missense_Mutation p.C568Y 0.41 tolerated(1) benign(0.012) TCGA-46-3765-01 9 116812065 116812065 A T ZNF618 Missense_Mutation p.K735M 0.16 deleterious(0.01) probably_damaging(0.982) TCGA-46-3765-01 9 134471736 134471736 C G RAPGEF1 Missense_Mutation p.G712R 0.59 deleterious(0.01) possibly_damaging(0.905) TCGA-46-3765-01 9 137293518 137293518 G T RXRA Silent p.T23T 0.54 TCGA-46-3765-01 9 36118794 36118794 G T RECK Missense_Mutation p.G765V 0.48 deleterious(0.01) possibly_damaging(0.881) TCGA-46-3765-01 9 66459890 66459890 G A RP11-262H14.1 RNA 0.09 TCGA-46-3765-01 9 7799633 7799633 C A TMEM261 Silent p.A34A 0.37 TCGA-46-3765-01 9 8331669 8331669 G T PTPRD Missense_Mutation p.S1816Y 0.38 tolerated(0.06) probably_damaging(0.998) TCGA-46-3765-01 X 101572348 101572348 C A NXF2 Missense_Mutation p.S82R 0.15 tolerated(0.3) benign(0.022) TCGA-46-3765-01 X 102317936 102317936 C T BEX1 Silent p.V89V 0.31 TCGA-46-3765-01 X 125686327 125686327 C A DCAF12L1 Nonsense_Mutation p.E89* 0.41 TCGA-46-3765-01 X 12905841 12905841 G A TLR7 Silent p.L738L 0.29 TCGA-46-3765-01 X 131206864 131206864 G C MST4 Silent p.L350L 0.28 TCGA-46-3765-01 X 152959701 152959701 C G SLC6A8 Missense_Mutation p.I457M 0.40 tolerated(0.06) probably_damaging(0.927) TCGA-46-3765-01 X 16846272 16846272 C A TXLNG Missense_Mutation p.A185D 0.32 deleterious(0.01) benign(0.292) TCGA-46-3765-01 X 56295866 56295866 G C KLF8 Missense_Mutation p.E234D 0.36 tolerated(0.51) benign(0.023) TCGA-46-3765-01 X 57935671 57935671 C A ZXDA Missense_Mutation p.G395V 0.29 deleterious(0) probably_damaging(0.92) TCGA-46-3765-01 X 65474929 65474929 C A HEPH Silent p.P926P 0.09 TCGA-46-3765-01 X 7268042 7268042 G A STS Missense_Mutation p.D498N 0.44 tolerated(0.22) benign(0.02) TCGA-46-3765-01 X 76763844 76763844 T A ATRX Missense_Mutation p.Q2488H 0.32 possibly_damaging(0.594) TCGA-46-3765-01 X 79936891 79936891 C A BRWD3 Missense_Mutation p.D1535Y 0.28 deleterious_low_confidence(0) possibly_damaging(0.556) TCGA-46-3767-01 10 127418024 127418024 A G EDRF1 Missense_Mutation p.Y331C 0.07 deleterious(0.01) probably_damaging(0.994) TCGA-46-3767-01 10 133978215 133978215 A G JAKMIP3 Silent p.R820R 0.12 TCGA-46-3767-01 10 26512861 26512865 TTGGA - GAD2 Frame_Shift_Del p.G190Sfs*12 0.12 TCGA-46-3767-01 10 30915048 30915048 T A LYZL2 Missense_Mutation p.H141L 0.07 deleterious(0.01) possibly_damaging(0.741) TCGA-46-3767-01 10 45430487 45430487 G A TMEM72 Missense_Mutation p.E245K 0.21 deleterious(0.01) possibly_damaging(0.521) TCGA-46-3767-01 10 50154982 50154982 C A WDFY4 Missense_Mutation p.P2649T 0.29 deleterious(0.01) possibly_damaging(0.665) TCGA-46-3767-01 10 50820303 50820303 G T SLC18A3 Missense_Mutation p.G506V 0.13 deleterious(0.01) benign(0.005) TCGA-46-3767-01 10 51761793 51761793 G T AGAP6 Missense_Mutation p.C145F 0.13 deleterious_low_confidence(0.01) benign(0.007) TCGA-46-3767-01 11 123887173 123887173 G T OR10G4 Missense_Mutation p.V298L 0.16 tolerated(1) benign(0.001) TCGA-46-3767-01 11 18014479 18014479 T G SERGEF Silent p.T228T 0.16 TCGA-46-3767-01 11 30928154 30928154 C G DCDC1 Missense_Mutation p.C1346S 0.19 deleterious(0) benign(0.291) TCGA-46-3767-01 11 33565038 33565038 C T KIAA1549L Silent p.G346G 0.17 TCGA-46-3767-01 11 55655543 55655543 T A TRIM51 Silent p.A181A 0.17 TCGA-46-3767-01 11 56043875 56043875 G T OR5T1 Missense_Mutation p.G254V 0.07 deleterious(0.02) possibly_damaging(0.517) TCGA-46-3767-01 11 5862634 5862634 A T OR52E6 Missense_Mutation p.L165H 0.16 deleterious(0) probably_damaging(0.989) TCGA-46-3767-01 11 58892347 58892347 A G FAM111B Silent p.V259V 0.13 TCGA-46-3767-01 11 6245017 6245017 T A FAM160A2 Silent p.P200P 0.15 TCGA-46-3767-01 11 82644903 82644903 T C C11orf82 Silent p.G841G 0.10 TCGA-46-3767-01 11 89935578 89935578 C G CHORDC1 Missense_Mutation p.D332H 0.14 deleterious_low_confidence(0) possibly_damaging(0.471) TCGA-46-3767-01 12 104179133 104179133 C A NT5DC3 Missense_Mutation p.G437C 0.10 deleterious(0.01) probably_damaging(0.988) TCGA-46-3767-01 12 112481017 112481017 T A NAA25 Splice_Site p.X751_splice 0.12 TCGA-46-3767-01 12 22218072 22218072 G T CMAS Nonsense_Mutation p.E378* 0.12 TCGA-46-3767-01 12 4874599 4874599 G T GALNT8 Missense_Mutation p.A550S 0.13 tolerated(0.64) benign(0.027) TCGA-46-3767-01 12 51696919 51696919 C A BIN2 Missense_Mutation p.G57C 0.10 deleterious(0.01) benign(0.378) TCGA-46-3767-01 12 52380615 52380615 G C ACVR1B Missense_Mutation p.E425Q 0.13 deleterious(0) possibly_damaging(0.889) TCGA-46-3767-01 12 52841120 52841120 A T KRT6B Missense_Mutation p.Y517N 0.12 tolerated(0.16) unknown(0) TCGA-46-3767-01 12 72425388 72425388 T A TPH2 Missense_Mutation p.S462R 0.20 tolerated(0.22) possibly_damaging(0.826) TCGA-46-3767-01 12 7647710 7647710 C T CD163 Missense_Mutation p.D463N 0.15 tolerated(0.44) benign(0.315) TCGA-46-3767-01 14 101200491 101200491 C T DLK1 Missense_Mutation p.P137L 0.12 deleterious(0.03) probably_damaging(1) TCGA-46-3767-01 14 101335439 101335439 G T MIR493 RNA 0.12 TCGA-46-3767-01 14 101348215 101348215 C T RTL1 Missense_Mutation p.V971I 0.10 tolerated(0.07) possibly_damaging(0.656) TCGA-46-3767-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.16 deleterious(0) probably_damaging(0.999) TCGA-46-3767-01 14 20528788 20528788 G T OR4L1 Silent p.L195L 0.10 TCGA-46-3767-01 14 22616466 22616466 G T TRAV27 Silent p.T69T 0.16 TCGA-46-3767-01 14 74426223 74426223 T - COQ6 Frame_Shift_Del p.W298Gfs*24 0.10 TCGA-46-3767-01 14 77579782 77579782 C G CIPC Silent p.S107S 0.08 TCGA-46-3767-01 15 26866631 26866631 G C GABRB3 Silent p.L97L 0.08 TCGA-46-3767-01 15 28235745 28235745 C A OCA2 Missense_Mutation p.A365S 0.08 tolerated(0.16) possibly_damaging(0.817) TCGA-46-3767-01 15 34648683 34648683 T A NUTM1 Missense_Mutation p.L797Q 0.16 deleterious(0.01) possibly_damaging(0.907) TCGA-46-3767-01 15 42378498 42378498 C T PLA2G4D Silent p.E100E 0.18 TCGA-46-3767-01 15 77348510 77348510 G C TSPAN3 Missense_Mutation p.L51V 0.05 deleterious(0.04) benign(0.34) TCGA-46-3767-01 15 85438170 85438170 G T SLC28A1 Splice_Site p.X93_splice 0.31 TCGA-46-3767-01 16 20329643 20329643 C A GP2 Missense_Mutation p.V376F 0.14 deleterious(0.01) probably_damaging(0.979) TCGA-46-3767-01 16 20682918 20682918 G A ACSM1 Silent p.T229T 0.16 TCGA-46-3767-01 16 3021766 3021766 G A PAQR4 Silent p.A213A 0.14 TCGA-46-3767-01 16 3293137 3293137 G C MEFV 3'UTR 0.17 TCGA-46-3767-01 16 68010022 68010022 G T DPEP3 Missense_Mutation p.L427M 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-46-3767-01 17 10216043 10216043 C A MYH13 Nonsense_Mutation p.E1405* 0.27 TCGA-46-3767-01 17 10443358 10443358 G T MYH2 Missense_Mutation p.T345N 0.16 tolerated(0.13) benign(0.008) TCGA-46-3767-01 17 1183600 1183600 G C TUSC5 Missense_Mutation p.R102T 0.15 deleterious(0.02) benign(0.245) TCGA-46-3767-01 17 15207316 15207316 C G TEKT3 Missense_Mutation p.Q470H 0.16 deleterious(0.03) benign(0.309) TCGA-46-3767-01 17 29162429 29162429 A T ATAD5 Nonsense_Mutation p.K444* 0.24 TCGA-46-3767-01 17 36966763 36966763 C T CWC25 Missense_Mutation p.S195N 0.13 deleterious(0.05) benign(0.006) TCGA-46-3767-01 17 42636019 42636019 C T FZD2 Silent p.G321G 0.33 TCGA-46-3767-01 17 46622226 46622226 C A HOXB2 Silent p.P16P 0.24 TCGA-46-3767-01 17 7578271 7578271 T C TP53 Missense_Mutation p.H193R 0.23 deleterious(0) probably_damaging(1) TCGA-46-3767-01 17 76099517 76099517 C T TNRC6C Missense_Mutation p.T1568I 0.21 deleterious(0) probably_damaging(0.994) TCGA-46-3767-01 18 2885096 2885096 C A EMILIN2 Missense_Mutation p.P131H 0.23 tolerated(0.07) benign(0.086) TCGA-46-3767-01 18 33283583 33283583 C T GALNT1 Silent p.N503N 0.08 TCGA-46-3767-01 18 47010053 47010053 T C RPL17-C18orf32 Missense_Mutation p.H199R 0.10 tolerated_low_confidence(0.96) benign(0) TCGA-46-3767-01 18 61328424 61328424 G A SERPINB3 Silent p.T9T 0.10 TCGA-46-3767-01 19 12460784 12460784 T G ZNF442 Missense_Mutation p.T539P 0.12 deleterious(0.03) possibly_damaging(0.485) TCGA-46-3767-01 19 18321932 18321932 T C PDE4C Missense_Mutation p.E649G 0.12 tolerated_low_confidence(0.12) benign(0.002) TCGA-46-3767-01 19 39088220 39088220 G A MAP4K1 Silent p.L562L 0.22 TCGA-46-3767-01 19 42566697 42566697 G A GRIK5 Nonsense_Mutation p.R151* 0.16 TCGA-46-3767-01 19 43243198 43243198 G T PSG3 Silent p.V36V 0.11 TCGA-46-3767-01 19 46842856 46842856 G T HIF3A Missense_Mutation p.A663S 0.22 deleterious_low_confidence(0.01) benign(0.101) TCGA-46-3767-01 19 51645698 51645698 G T SIGLEC7 Missense_Mutation p.K24N 0.20 tolerated(0.25) benign(0.012) TCGA-46-3767-01 19 55087509 55087509 C A LILRA2 Nonsense_Mutation p.Y396* 0.11 TCGA-46-3767-01 19 55435122 55435122 C A NLRP7 Missense_Mutation p.D1034Y 0.15 deleterious(0) benign(0.045) TCGA-46-3767-01 19 56382329 56382329 T A NLRP4 Missense_Mutation p.L831M 0.11 tolerated(0.06) probably_damaging(0.991) TCGA-46-3767-01 19 57175492 57175492 C G ZNF835 Missense_Mutation p.E359Q 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-46-3767-01 19 57802519 57802519 G C ZNF460 Missense_Mutation p.A204P 0.09 deleterious(0.01) probably_damaging(0.917) TCGA-46-3767-01 19 59010941 59010941 C A SLC27A5 Missense_Mutation p.V529F 0.10 deleterious(0) benign(0.304) TCGA-46-3767-01 19 8609217 8609217 C T MYO1F Nonsense_Mutation p.W496* 0.20 TCGA-46-3767-01 19 9074998 9074998 G T MUC16 Missense_Mutation p.P4150T 0.14 unknown(0) TCGA-46-3767-01 1 152748937 152748937 C A LCE1F Silent p.P30P 0.28 TCGA-46-3767-01 1 156640754 156640754 C A NES Missense_Mutation p.D1076Y 0.22 deleterious(0.01) possibly_damaging(0.576) TCGA-46-3767-01 1 158298754 158298754 A T CD1B Missense_Mutation p.L313M 0.16 deleterious(0) benign(0.164) TCGA-46-3767-01 1 158812030 158812030 G C MNDA Silent p.L29L 0.11 TCGA-46-3767-01 1 158812031 158812031 G A MNDA Missense_Mutation p.A30T 0.11 tolerated(0.12) possibly_damaging(0.807) TCGA-46-3767-01 1 159275872 159275872 G A FCER1A Silent p.K142K 0.18 TCGA-46-3767-01 1 175097789 175097789 C A TNN Silent p.A1079A 0.08 TCGA-46-3767-01 1 183559390 183559390 G T NCF2 Silent p.A25A 0.14 TCGA-46-3767-01 1 184695505 184695505 T C EDEM3 Missense_Mutation p.I211V 0.20 tolerated(1) benign(0.004) TCGA-46-3767-01 1 197898339 197898339 A T LHX9 Missense_Mutation p.S382C 0.09 tolerated(0.19) possibly_damaging(0.682) TCGA-46-3767-01 1 198668711 198668711 C G PTPRC Missense_Mutation p.T106R 0.10 deleterious(0.05) benign(0.122) TCGA-46-3767-01 1 204375323 204375323 T C PPP1R15B Missense_Mutation p.E680G 0.10 deleterious(0) probably_damaging(1) TCGA-46-3767-01 1 20975099 20975099 G C PINK1 Missense_Mutation p.G409R 0.17 deleterious(0.02) probably_damaging(0.976) TCGA-46-3767-01 1 237755079 237755079 C T RYR2 Missense_Mutation p.H1401Y 0.13 benign(0.062) TCGA-46-3767-01 1 238090391 238090391 C A RP11-193H5.1 RNA 0.11 TCGA-46-3767-01 1 242161882 242161882 G A MAP1LC3C Missense_Mutation p.P52L 0.10 tolerated(1) benign(0.004) TCGA-46-3767-01 1 247655381 247655381 G T OR2W5 RNA 0.17 TCGA-46-3767-01 1 248436338 248436338 G C OR2T33 Missense_Mutation p.P260R 0.13 deleterious(0.04) probably_damaging(0.993) TCGA-46-3767-01 1 248569858 248569858 G T OR2T1 Missense_Mutation p.R188L 0.16 tolerated(0.07) benign(0.178) TCGA-46-3767-01 20 18516382 18516382 A G SEC23B Missense_Mutation p.N467S 0.18 tolerated(0.34) benign(0.34) TCGA-46-3767-01 20 23472308 23472308 C G CST8 Missense_Mutation p.P2A 0.18 tolerated_low_confidence(0.16) possibly_damaging(0.811) TCGA-46-3767-01 20 48600466 48600466 C G SNAI1 Missense_Mutation p.S63C 0.16 deleterious(0) benign(0.011) TCGA-46-3767-01 20 61541126 61541126 T G DIDO1 Missense_Mutation p.E362D 0.13 benign(0.036) TCGA-46-3767-01 21 31863884 31863884 A T KRTAP19-3 3'UTR 0.33 TCGA-46-3767-01 21 46021203 46021203 C T KRTAP10-7 Missense_Mutation p.P228S 0.09 tolerated(0.29) unknown(0) TCGA-46-3767-01 22 26423089 26423089 G T MYO18B Silent p.R2383R 0.22 TCGA-46-3767-01 2 103343376 103343376 T C MFSD9 Missense_Mutation p.S119G 0.07 deleterious(0) probably_damaging(0.95) TCGA-46-3767-01 2 107459731 107459731 C A ST6GAL2 Missense_Mutation p.G235W 0.38 probably_damaging(0.997) TCGA-46-3767-01 2 158636892 158636892 C A ACVR1 Silent p.G96G 0.15 TCGA-46-3767-01 2 171034739 171034739 G A MYO3B 5'UTR 0.14 TCGA-46-3767-01 2 179444634 179444634 C T TTN Intron 0.17 TCGA-46-3767-01 2 179583529 179583529 G T TTN Missense_Mutation p.T8133K 0.10 TCGA-46-3767-01 2 207527889 207527889 C T DYTN Silent p.E457E 0.08 TCGA-46-3767-01 2 228777099 228777099 A G DAW1 Intron 0.33 TCGA-46-3767-01 2 241555804 241555804 G T GPR35 Splice_Site 0.14 TCGA-46-3767-01 2 32726824 32726824 G T BIRC6 Missense_Mutation p.G3026W 0.26 probably_damaging(0.998) TCGA-46-3767-01 2 43732780 43732780 A T THADA Missense_Mutation p.I1201K 0.25 tolerated(0.8) benign(0.001) TCGA-46-3767-01 2 49381582 49381582 C A FSHR 5'UTR 0.15 TCGA-46-3767-01 2 8952577 8952577 T C KIDINS220 Missense_Mutation p.D151G 0.15 tolerated(0.11) benign(0.217) TCGA-46-3767-01 2 90121879 90121879 A T IGKV1D-17 Missense_Mutation p.M33L 0.06 tolerated(1) benign(0) TCGA-46-3767-01 3 100964871 100964871 C G IMPG2 Missense_Mutation p.G440R 0.16 tolerated(0.06) possibly_damaging(0.653) TCGA-46-3767-01 3 108394691 108394691 G A DZIP3 Missense_Mutation p.D918N 0.25 tolerated(0.25) probably_damaging(0.996) TCGA-46-3767-01 3 109049388 109049388 G A DPPA4 Missense_Mutation p.S221F 0.10 deleterious(0) probably_damaging(0.989) TCGA-46-3767-01 3 134851685 134851685 G A EPHB1 Missense_Mutation p.R364Q 0.10 tolerated(0.59) benign(0.016) TCGA-46-3767-01 3 151046127 151046127 A G P2RY13 Silent p.Y239Y 0.09 TCGA-46-3767-01 3 164907242 164907242 C G SLITRK3 Missense_Mutation p.K459N 0.07 deleterious(0) probably_damaging(0.915) TCGA-46-3767-01 3 179069752 179069752 A T MFN1 Silent p.G59G 0.23 TCGA-46-3767-01 3 8940726 8940726 C - RAD18 Frame_Shift_Del p.E392Kfs*4 0.13 TCGA-46-3767-01 4 113189328 113189328 A G AP1AR Silent p.E224E 0.10 TCGA-46-3767-01 4 156632319 156632319 G T GUCY1A3 Silent p.T334T 0.14 TCGA-46-3767-01 4 177094441 177094441 A T WDR17 Missense_Mutation p.T1129S 0.14 tolerated(0.12) benign(0.011) TCGA-46-3767-01 4 183603016 183603016 G T TENM3 Silent p.G628G 0.15 TCGA-46-3767-01 4 186343691 186343691 G C UFSP2 Silent p.L10L 0.10 TCGA-46-3767-01 4 56832003 56832003 A T CEP135 Missense_Mutation p.D341V 0.26 deleterious(0.01) probably_damaging(1) TCGA-46-3767-01 5 133996855 133996855 A G SEC24A Silent p.Q48Q 0.14 TCGA-46-3767-01 5 140347837 140347837 C A PCDHAC2 Missense_Mutation p.P496T 0.22 deleterious(0.01) benign(0.1) TCGA-46-3767-01 5 140564195 140564195 T C PCDHB16 Silent p.T687T 0.14 TCGA-46-3767-01 5 159640821 159640821 G C FABP6 Missense_Mutation p.G44R 0.16 deleterious_low_confidence(0) benign(0.057) TCGA-46-3767-01 5 19473524 19473524 G C CDH18 Missense_Mutation p.S728R 0.11 tolerated(0.07) possibly_damaging(0.881) TCGA-46-3767-01 5 33947229 33947229 C A SLC45A2 Intron 0.13 TCGA-46-3767-01 6 127765317 127765317 A T KIAA0408 Silent p.P674P 0.23 TCGA-46-3767-01 6 132014691 132014691 C T ENPP3 Nonsense_Mutation p.R447* 0.10 TCGA-46-3767-01 6 137245645 137245645 C T SLC35D3 Silent p.G354G 0.33 TCGA-46-3767-01 6 165756886 165756886 C A PDE10A Missense_Mutation p.W697C 0.12 deleterious(0) probably_damaging(0.987) TCGA-46-3767-01 6 168347398 168347398 C T MLLT4 Missense_Mutation p.R1117C 0.14 deleterious(0) possibly_damaging(0.843) TCGA-46-3767-01 6 29080293 29080293 T G OR2J3 Missense_Mutation p.F209C 0.07 deleterious(0) probably_damaging(0.959) TCGA-46-3767-01 6 51890462 51890462 G T PKHD1 Silent p.L1382L 0.19 TCGA-46-3767-01 6 74477846 74477846 A G CD109 Silent p.E522E 0.08 TCGA-46-3767-01 7 100551669 100551669 C A MUC3A Silent p.A140A 0.16 TCGA-46-3767-01 7 111379224 111379224 C A DOCK4 Missense_Mutation p.S1724I 0.14 deleterious(0) probably_damaging(0.987) TCGA-46-3767-01 7 122338498 122338498 T A RNF133 Nonsense_Mutation p.K159* 0.16 TCGA-46-3767-01 7 132193312 132193312 G C PLXNA4 Silent p.P47P 0.24 TCGA-46-3767-01 7 139726098 139726098 C A PARP12 Missense_Mutation p.R560L 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-46-3767-01 7 156974359 156974359 G T UBE3C Missense_Mutation p.G255V 0.09 tolerated(0.24) benign(0.003) TCGA-46-3767-01 7 81591314 81591314 C A CACNA2D1 Silent p.T954T 0.14 TCGA-46-3767-01 7 86493636 86493636 C A GRM3 Silent p.R869R 0.26 TCGA-46-3767-01 8 101153374 101153374 C A FBXO43 Missense_Mutation p.D370Y 0.22 deleterious(0) possibly_damaging(0.695) TCGA-46-3767-01 8 69009359 69009359 G T PREX2 Missense_Mutation p.D826Y 0.12 deleterious_low_confidence(0.04) probably_damaging(0.998) TCGA-46-3767-01 8 69351818 69351818 C A C8orf34 Missense_Mutation p.R138S 0.19 tolerated(0.12) benign(0.33) TCGA-46-3767-01 8 70744099 70744099 C G SLCO5A1 Silent p.A270A 0.14 TCGA-46-3767-01 8 95523407 95523407 T A KIAA1429 Intron 0.15 TCGA-46-3767-01 9 123875857 123875857 A T CNTRL Silent p.T400T 0.12 TCGA-46-3767-01 9 135941993 135941993 C T CEL Silent p.P208P 0.16 TCGA-46-3767-01 9 23701384 23701384 G C ELAVL2 Missense_Mutation p.R236G 0.14 tolerated(0.07) benign(0.059) TCGA-46-3767-01 9 79323950 79323950 G C PRUNE2 Missense_Mutation p.D1080E 0.15 tolerated(0.68) possibly_damaging(0.474) TCGA-46-3767-01 X 109924818 109924818 G C CHRDL1 Missense_Mutation p.P350A 0.13 tolerated(0.45) probably_damaging(0.997) TCGA-46-3767-01 X 122551691 122551691 C G GRIA3 Intron 0.18 TCGA-46-3767-01 X 130218636 130218636 C A ARHGAP36 Missense_Mutation p.S262Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-46-3767-01 X 130417031 130417031 C T IGSF1 Missense_Mutation p.G292E 0.11 deleterious(0) probably_damaging(1) TCGA-46-3767-01 X 37027657 37027657 C G FAM47C Missense_Mutation p.P392A 0.14 tolerated(0.08) possibly_damaging(0.627) TCGA-46-3767-01 X 64721966 64721966 C A ZC3H12B Missense_Mutation p.P463H 0.22 deleterious(0) probably_damaging(0.995) TCGA-46-3767-01 X 65392409 65392409 C G HEPH Missense_Mutation p.P181R 0.14 deleterious(0) probably_damaging(1) TCGA-46-3767-01 X 65427122 65427122 A G HEPH Missense_Mutation p.T847A 0.24 deleterious(0.02) possibly_damaging(0.724) TCGA-46-3767-01 X 83128462 83128462 T C CYLC1 Missense_Mutation p.M249T 0.20 deleterious(0.01) benign(0.092) TCGA-46-3768-01 10 104135269 104135269 G C GBF1 Missense_Mutation p.E1271Q 0.61 deleterious(0.04) possibly_damaging(0.688) TCGA-46-3768-01 10 106907389 106907389 C T SORCS3 Silent p.I439I 0.38 TCGA-46-3768-01 10 108339011 108339011 T C SORCS1 Splice_Site p.X1124_splice 0.24 TCGA-46-3768-01 10 116232760 116232760 T C ABLIM1 Silent p.K417K 0.75 TCGA-46-3768-01 10 129913759 129913759 C G MKI67 Missense_Mutation p.E305Q 0.14 tolerated(0.16) possibly_damaging(0.702) TCGA-46-3768-01 10 133106547 133106547 A C TCERG1L Silent p.A199A 0.72 TCGA-46-3768-01 10 31810412 31810412 C A ZEB1 Missense_Mutation p.Q718K 0.28 tolerated(0.16) benign(0.103) TCGA-46-3768-01 10 38345348 38345348 G C ZNF33A Missense_Mutation p.V766L 0.40 tolerated(0.17) benign(0) TCGA-46-3768-01 10 49392662 49392662 C G FRMPD2 Missense_Mutation p.R844T 0.33 tolerated(0.08) possibly_damaging(0.72) TCGA-46-3768-01 10 5799560 5799560 T C FAM208B Silent p.D2270D 0.21 TCGA-46-3768-01 10 76910349 76910349 G A SAMD8 Silent p.L21L 0.48 TCGA-46-3768-01 10 77806919 77806919 C T C10orf11 Intron 0.50 TCGA-46-3768-01 11 100061878 100061878 G T CNTN5 Missense_Mutation p.G534V 0.62 deleterious(0) possibly_damaging(0.809) TCGA-46-3768-01 11 1020215 1020215 G T MUC6 Missense_Mutation p.T1228N 0.69 unknown(0) TCGA-46-3768-01 11 104972156 104972156 C A CARD17 5'UTR 0.32 TCGA-46-3768-01 11 105623843 105623843 C G GRIA4 Missense_Mutation p.S128R 0.68 tolerated(0.44) benign(0.256) TCGA-46-3768-01 11 105795143 105795143 G T GRIA4 Missense_Mutation p.A499S 0.78 deleterious(0.03) possibly_damaging(0.89) TCGA-46-3768-01 11 106680751 106680751 C G GUCY1A2 Missense_Mutation p.D554H 0.16 deleterious(0) probably_damaging(1) TCGA-46-3768-01 11 106849403 106849403 G - GUCY1A2 Frame_Shift_Del p.N144Tfs*21 0.41 TCGA-46-3768-01 11 117038512 117038512 G A PAFAH1B2 3'UTR 1.00 TCGA-46-3768-01 11 117160476 117160476 A G BACE1 Silent p.L438L 0.63 TCGA-46-3768-01 11 124440879 124440879 C A OR8A1 Silent p.I305I 0.71 TCGA-46-3768-01 11 125484306 125484306 G T STT3A Missense_Mutation p.G587W 0.60 deleterious(0) probably_damaging(0.999) TCGA-46-3768-01 11 125618497 125618497 G T PATE1 Missense_Mutation p.D84Y 0.62 deleterious(0) probably_damaging(0.971) TCGA-46-3768-01 11 13729455 13729455 T C FAR1 Missense_Mutation p.V125A 0.94 deleterious(0) benign(0.411) TCGA-46-3768-01 11 14280884 14280884 C A RP11-21L19.1 3'Flank 0.70 TCGA-46-3768-01 11 20668427 20668427 C G SLC6A5 Missense_Mutation p.P673A 0.66 deleterious(0.02) benign(0.062) TCGA-46-3768-01 11 20668428 20668428 C G SLC6A5 Missense_Mutation p.P673R 0.66 tolerated(0.06) benign(0.02) TCGA-46-3768-01 11 26620410 26620410 A T ANO3 Silent p.T512T 0.30 TCGA-46-3768-01 11 5411036 5411036 G T OR51M1 Silent p.V136V 0.68 TCGA-46-3768-01 11 55433025 55433025 T A OR4C6 Missense_Mutation p.L128Q 0.71 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-46-3768-01 11 60704035 60704035 G C TMEM132A Missense_Mutation p.D911H 0.38 deleterious(0.01) probably_damaging(1) TCGA-46-3768-01 11 70009436 70009436 G A ANO1 Missense_Mutation p.R647Q 0.42 deleterious(0) possibly_damaging(0.836) TCGA-46-3768-01 11 83344300 83344300 C A DLG2 Missense_Mutation p.G632W 0.69 deleterious(0) probably_damaging(0.995) TCGA-46-3768-01 12 10149584 10149584 C A CLEC1B Missense_Mutation p.S100I 0.44 deleterious(0.03) benign(0.126) TCGA-46-3768-01 12 102492903 102492903 T A NUP37 Missense_Mutation p.S144C 0.47 deleterious(0) probably_damaging(0.994) TCGA-46-3768-01 12 105551091 105551091 A G KIAA1033 Missense_Mutation p.K968R 0.43 tolerated(0.49) benign(0.002) TCGA-46-3768-01 12 113837484 113837484 C A SDS Missense_Mutation p.K10N 0.50 tolerated(0.52) benign(0.003) TCGA-46-3768-01 12 124317842 124317842 A G DNAH10 Missense_Mutation p.Q1458R 0.46 benign(0.026) TCGA-46-3768-01 12 127229426 127229426 G A LINC00943 RNA 0.33 TCGA-46-3768-01 12 14633957 14633957 A G ATF7IP Missense_Mutation p.T1040A 0.40 deleterious_low_confidence(0.03) unknown(0) TCGA-46-3768-01 12 21472485 21472485 C G SLCO1A2 Intron 0.47 TCGA-46-3768-01 12 31945016 31945016 T - H3F3C Frame_Shift_Del p.S29Afs*8 0.28 TCGA-46-3768-01 12 40692290 40692290 A T LRRK2 Missense_Mutation p.L1114F 0.45 deleterious(0) possibly_damaging(0.883) TCGA-46-3768-01 12 49949466 49949466 G C KCNH3 Missense_Mutation p.D734H 0.24 tolerated(0.07) benign(0.04) TCGA-46-3768-01 12 52778981 52778981 C A KRT84 Missense_Mutation p.G130V 0.41 tolerated(0.3) probably_damaging(0.998) TCGA-46-3768-01 12 52962040 52962040 C G KRT74 Missense_Mutation p.R423P 0.37 deleterious(0.02) benign(0.168) TCGA-46-3768-01 12 52967522 52967522 C A KRT74 Missense_Mutation p.G14C 0.47 tolerated(0.08) possibly_damaging(0.77) TCGA-46-3768-01 12 53091506 53091506 C A KRT77 Missense_Mutation p.V240F 0.09 deleterious(0.02) possibly_damaging(0.812) TCGA-46-3768-01 12 55759748 55759748 C T OR6C75 Missense_Mutation p.P285L 0.20 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-46-3768-01 12 62894643 62894643 G T MON2 Missense_Mutation p.A216S 0.43 deleterious(0.01) probably_damaging(0.997) TCGA-46-3768-01 12 62894645 62894645 A T MON2 Silent p.A216A 0.43 TCGA-46-3768-01 12 77419463 77419463 G A E2F7 Missense_Mutation p.P814S 0.28 tolerated(0.07) benign(0.027) TCGA-46-3768-01 12 8330139 8330139 T A ZNF705A Missense_Mutation p.L288Q 0.16 tolerated(0.09) probably_damaging(0.973) TCGA-46-3768-01 12 86373490 86373490 A T MGAT4C Silent p.P338P 0.38 TCGA-46-3768-01 12 8689737 8689737 C A CLEC4E Missense_Mutation p.V116L 0.54 deleterious(0.03) probably_damaging(0.934) TCGA-46-3768-01 12 95488424 95488424 T A FGD6 Missense_Mutation p.I1182L 0.19 tolerated(0.15) possibly_damaging(0.759) TCGA-46-3768-01 13 108861116 108861116 T A LIG4 Missense_Mutation p.E834V 0.37 tolerated(0.2) benign(0.001) TCGA-46-3768-01 13 23906110 23906110 G A SACS Missense_Mutation p.L3969F 0.12 probably_damaging(0.994) TCGA-46-3768-01 13 25026687 25026687 G C PARP4 Silent p.L957L 0.48 TCGA-46-3768-01 13 28794441 28794441 C A PAN3 Nonsense_Mutation p.S309* 0.14 TCGA-46-3768-01 13 32527150 32527150 G T EEF1DP3 RNA 0.34 TCGA-46-3768-01 13 33638087 33638087 T A KL Missense_Mutation p.F935I 0.55 tolerated(0.1) possibly_damaging(0.456) TCGA-46-3768-01 13 35517158 35517158 C T NBEA Silent p.I67I 0.30 TCGA-46-3768-01 13 39271908 39271908 T C FREM2 Silent p.F1749F 0.10 TCGA-46-3768-01 13 46085956 46085956 A T COG3 Missense_Mutation p.L592F 0.49 deleterious(0.01) probably_damaging(0.947) TCGA-46-3768-01 13 58208948 58208949 GG A PCDH17 Frame_Shift_Del p.G757Afs*24 0.38 TCGA-46-3768-01 13 76382282 76382282 G T LMO7 Missense_Mutation p.E388D 0.49 deleterious(0) possibly_damaging(0.614) TCGA-46-3768-01 14 102816311 102816311 A G CINP Silent p.Y142Y 0.63 TCGA-46-3768-01 14 20215703 20215703 C A OR4Q3 Silent p.V39V 0.48 TCGA-46-3768-01 14 20215704 20215704 C G OR4Q3 Missense_Mutation p.L40V 0.50 tolerated(0.36) benign(0.012) TCGA-46-3768-01 14 24838700 24838700 G C NFATC4 Intron 0.72 TCGA-46-3768-01 14 78353520 78353520 G C ADCK1 Silent p.G170G 0.78 TCGA-46-3768-01 14 80130287 80130287 C A NRXN3 Missense_Mutation p.P831H 0.82 deleterious(0) benign(0.005) TCGA-46-3768-01 15 23932428 23932428 C A NDN 5'UTR 0.43 TCGA-46-3768-01 15 25227297 25227297 G A SNRPN 3'Flank 0.55 TCGA-46-3768-01 15 25448376 25448376 G A SNORD115-18 RNA 0.23 TCGA-46-3768-01 15 25479263 25479263 A G SNORD115-33 3'Flank 0.11 TCGA-46-3768-01 15 42459085 42459085 C A VPS39 Missense_Mutation p.L468F 0.24 deleterious(0) probably_damaging(0.945) TCGA-46-3768-01 15 45814396 45814396 C A SLC30A4 Missense_Mutation p.D53Y 0.43 tolerated(0.1) possibly_damaging(0.838) TCGA-46-3768-01 15 48056121 48056121 G C SEMA6D Missense_Mutation p.W274C 0.38 deleterious(0) probably_damaging(1) TCGA-46-3768-01 15 50190438 50190438 A G ATP8B4 Missense_Mutation p.L767P 0.47 deleterious(0.05) probably_damaging(1) TCGA-46-3768-01 15 54305821 54305821 G A UNC13C Missense_Mutation p.D241N 0.46 deleterious_low_confidence(0) possibly_damaging(0.501) TCGA-46-3768-01 15 54305932 54305932 T A UNC13C Missense_Mutation p.S278T 0.40 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-46-3768-01 15 54592473 54592473 G C UNC13C Silent p.G1390G 0.53 TCGA-46-3768-01 15 59225621 59225621 G C SLTM Silent p.L48L 0.30 TCGA-46-3768-01 15 65499327 65499327 G T CILP Silent p.R73R 0.30 TCGA-46-3768-01 15 75013955 75013974 ATGTTAATGATCTTCTCATC - CYP1A1 Frame_Shift_Del p.D304Rfs*10 0.30 TCGA-46-3768-01 15 75594826 75594826 G A DNM1P34 RNA 0.20 TCGA-46-3768-01 15 80263514 80263514 A G BCL2A1 5'UTR 0.33 TCGA-46-3768-01 16 20335151 20335151 C A GP2 Silent p.L174L 0.50 TCGA-46-3768-01 16 23456434 23456434 A T COG7 Missense_Mutation p.S124T 0.08 deleterious(0.01) possibly_damaging(0.672) TCGA-46-3768-01 16 24583481 24583481 C G RBBP6 Silent p.V1698V 0.18 TCGA-46-3768-01 16 24922792 24922792 C A SLC5A11 Missense_Mutation p.L656M 0.48 tolerated(0.08) possibly_damaging(0.656) TCGA-46-3768-01 16 28847341 28847341 C T ATXN2L Nonsense_Mutation p.Q995* 0.16 TCGA-46-3768-01 16 31089893 31089893 G A ZNF646 Missense_Mutation p.G750S 0.15 tolerated(0.29) benign(0.004) TCGA-46-3768-01 16 31477078 31477078 A T ARMC5 Intron 0.43 TCGA-46-3768-01 16 3187644 3187644 G A ZNF213 Silent p.E121E 0.54 TCGA-46-3768-01 16 32893944 32893944 G T RP11-989E6.3 5'Flank 0.24 TCGA-46-3768-01 16 3614541 3614541 G T NLRC3 Silent p.R180R 0.35 TCGA-46-3768-01 16 48119595 48119595 A G ABCC12 Missense_Mutation p.L1246S 0.21 deleterious(0.01) possibly_damaging(0.885) TCGA-46-3768-01 16 53499487 53499487 T G RBL2 Missense_Mutation p.N612K 0.25 tolerated(0.19) benign(0.09) TCGA-46-3768-01 16 53499488 53499488 G T RBL2 Nonsense_Mutation p.E613* 0.25 TCGA-46-3768-01 16 55909174 55909174 G T CES5A Intron 0.54 TCGA-46-3768-01 16 70928378 70928378 G C HYDIN Missense_Mutation p.N3074K 0.43 possibly_damaging(0.859) TCGA-46-3768-01 16 72157488 72157488 C G PMFBP1 Missense_Mutation p.D884H 0.55 deleterious(0) probably_damaging(0.957) TCGA-46-3768-01 16 823224 823224 G A MSLNL Silent p.L682L 0.59 TCGA-46-3768-01 16 83941731 83941731 G T MLYCD Missense_Mutation p.E214D 0.62 tolerated(0.45) benign(0.03) TCGA-46-3768-01 16 84218511 84218511 C A TAF1C Missense_Mutation p.M28I 0.39 tolerated(0.07) benign(0.281) TCGA-46-3768-01 17 10412856 10412856 C A MYH1 Missense_Mutation p.W511C 0.62 deleterious(0) probably_damaging(0.989) TCGA-46-3768-01 17 10412857 10412857 C A MYH1 Missense_Mutation p.W511L 0.63 deleterious(0) possibly_damaging(0.827) TCGA-46-3768-01 17 12860030 12860030 A G ARHGAP44 Missense_Mutation p.I437V 0.72 deleterious(0.03) benign(0.045) TCGA-46-3768-01 17 2075968 2075968 T A SMG6 Missense_Mutation p.E1114V 0.86 deleterious(0.01) benign(0.056) TCGA-46-3768-01 17 27869816 27869816 G - TAOK1 Frame_Shift_Del p.G928Afs*42 0.21 TCGA-46-3768-01 17 27869818 27869818 C T TAOK1 Silent p.G928G 0.34 TCGA-46-3768-01 17 27869819 27869819 C T TAOK1 Missense_Mutation p.P929S 0.29 tolerated_low_confidence(0.82) benign(0.004) TCGA-46-3768-01 17 30696771 30696771 G T ZNF207 Missense_Mutation p.R493L 0.36 deleterious_low_confidence(0) unknown(0) TCGA-46-3768-01 17 3101463 3101463 T C OR1A2 Silent p.Y217Y 0.77 TCGA-46-3768-01 17 3337053 3337053 T C OR1E2 Missense_Mutation p.Y28C 0.73 deleterious(0.01) benign(0.107) TCGA-46-3768-01 17 46688189 46688189 G A HOXB7 Missense_Mutation p.S31F 0.26 deleterious(0) probably_damaging(0.985) TCGA-46-3768-01 17 57262807 57262807 G A PRR11 Missense_Mutation p.E96K 0.36 tolerated(0.45) benign(0.176) TCGA-46-3768-01 17 66416707 66416707 C T ARSG 3'UTR 0.23 TCGA-46-3768-01 17 72539071 72539071 G T CD300C Silent p.P152P 0.47 TCGA-46-3768-01 17 7577538 7577538 C G TP53 Missense_Mutation p.R248P 0.73 deleterious(0) probably_damaging(1) TCGA-46-3768-01 17 7710538 7710538 G T DNAH2 Missense_Mutation p.K3171N 0.76 possibly_damaging(0.783) TCGA-46-3768-01 17 78337588 78337588 C G RNF213 Silent p.V3916V 0.21 TCGA-46-3768-01 18 13826055 13826055 C T MC5R Silent p.Y97Y 0.13 TCGA-46-3768-01 18 14843069 14843069 G T ANKRD30B Missense_Mutation p.W933L 0.30 tolerated(0.45) benign(0.009) TCGA-46-3768-01 18 21758027 21758027 C T OSBPL1A Silent p.G681G 0.16 TCGA-46-3768-01 18 31324435 31324435 T C ASXL3 Silent p.A1541A 0.20 TCGA-46-3768-01 18 33613794 33613794 G A RPRD1A Missense_Mutation p.P53L 0.22 deleterious(0.04) benign(0.062) TCGA-46-3768-01 18 43446904 43446904 C A EPG5 Silent p.S2160S 0.63 TCGA-46-3768-01 18 65181344 65181344 C A DSEL Missense_Mutation p.V178F 0.63 deleterious(0) probably_damaging(0.989) TCGA-46-3768-01 18 65181345 65181345 C G DSEL Missense_Mutation p.E177D 0.63 deleterious(0.04) probably_damaging(0.998) TCGA-46-3768-01 18 6955481 6955481 G A LAMA1 Intron 0.45 TCGA-46-3768-01 18 8783855 8783855 G T SOGA2 Nonsense_Mutation p.E249* 0.15 TCGA-46-3768-01 19 17091325 17091325 T A CPAMD8 Missense_Mutation p.T570S 0.33 tolerated(0.05) benign(0.209) TCGA-46-3768-01 19 18649073 18649073 G A FKBP8 Missense_Mutation p.A242V 0.15 tolerated(0.91) benign(0.022) TCGA-46-3768-01 19 21300186 21300186 A G ZNF714 Missense_Mutation p.H239R 0.60 tolerated(0.84) benign(0.001) TCGA-46-3768-01 19 2217007 2217007 G C DOT1L Missense_Mutation p.G821A 0.28 deleterious_low_confidence(0.02) benign(0.013) TCGA-46-3768-01 19 23299949 23299949 A T ZNF730 5'UTR 0.28 TCGA-46-3768-01 19 2877439 2877439 C G ZNF556 Silent p.S161S 0.40 TCGA-46-3768-01 19 2877512 2877512 C T ZNF556 Missense_Mutation p.R186C 0.53 tolerated(0.32) benign(0.004) TCGA-46-3768-01 19 33202956 33202956 G A NUDT19 3'UTR 0.10 TCGA-46-3768-01 19 37854631 37854631 G C HKR1 Missense_Mutation p.S645T 0.07 tolerated(0.32) benign(0.033) TCGA-46-3768-01 19 43529139 43529139 A T PSG11 Missense_Mutation p.V45E 0.40 deleterious(0) probably_damaging(0.963) TCGA-46-3768-01 19 44096824 44096826 TCT - IRGQ In_Frame_Del p.E409del 0.41 TCGA-46-3768-01 19 4447574 4447574 C T UBXN6 Silent p.K196K 0.22 TCGA-46-3768-01 19 4538248 4538248 T A LRG1 Missense_Mutation p.R250W 0.62 deleterious(0.01) possibly_damaging(0.586) TCGA-46-3768-01 19 45975850 45975850 G T FOSB Silent p.S199S 0.44 TCGA-46-3768-01 19 498595 498595 C T MADCAM1 Missense_Mutation p.A146V 0.79 tolerated(0.46) benign(0.054) TCGA-46-3768-01 19 50099409 50099409 G T PRR12 Missense_Mutation p.G606V 0.46 benign(0.245) TCGA-46-3768-01 19 53085781 53085781 G A ZNF701 Missense_Mutation p.E223K 0.26 tolerated(0.24) possibly_damaging(0.805) TCGA-46-3768-01 19 53207909 53207909 T C ZNF611 3'UTR 0.58 TCGA-46-3768-01 19 54687471 54687471 C T MBOAT7 Silent p.L142L 0.37 TCGA-46-3768-01 19 55711656 55711656 C A PTPRH Missense_Mutation p.W456C 0.53 possibly_damaging(0.462) TCGA-46-3768-01 19 57175601 57175601 G A ZNF835 Silent p.A322A 0.34 TCGA-46-3768-01 19 58290273 58290273 C T ZNF586 Silent p.P106P 0.16 TCGA-46-3768-01 19 58991863 58991863 C T ZNF446 Missense_Mutation p.P375S 0.50 tolerated(0.27) benign(0) TCGA-46-3768-01 19 9090237 9090237 C T MUC16 Silent p.Q526Q 0.49 TCGA-46-3768-01 1 111963989 111963989 T A OVGP1 Missense_Mutation p.K271I 0.64 deleterious(0.02) possibly_damaging(0.863) TCGA-46-3768-01 1 112303946 112303946 G T DDX20 Intron 0.88 TCGA-46-3768-01 1 11249665 11249665 C A ANGPTL7 Missense_Mutation p.T10N 0.53 tolerated_low_confidence(0.31) benign(0.031) TCGA-46-3768-01 1 115524061 115524061 T A SYCP1 Missense_Mutation p.H829Q 0.79 tolerated(0.3) benign(0.005) TCGA-46-3768-01 1 11861293 11861293 G A MTHFR Missense_Mutation p.R134C 0.81 deleterious(0.05) benign(0.003) TCGA-46-3768-01 1 145706688 145706688 C G CD160 Missense_Mutation p.G24A 0.25 tolerated(0.1) possibly_damaging(0.814) TCGA-46-3768-01 1 152059147 152059147 T C TCHHL1 Silent p.G337G 0.22 TCGA-46-3768-01 1 157548310 157548310 C T FCRL4 Silent p.L461L 0.12 TCGA-46-3768-01 1 159409849 159409849 C T OR10J1 Nonsense_Mutation p.Q101* 0.24 TCGA-46-3768-01 1 160012156 160012156 C T KCNJ10 Nonsense_Mutation p.W56* 0.19 TCGA-46-3768-01 1 160209559 160209559 C T DCAF8 Silent p.V217V 0.17 TCGA-46-3768-01 1 161143746 161143746 C T B4GALT3 Missense_Mutation p.D195N 0.27 deleterious(0.03) probably_damaging(0.96) TCGA-46-3768-01 1 166829516 166829516 C T TADA1 Missense_Mutation p.R200Q 0.35 deleterious(0) possibly_damaging(0.66) TCGA-46-3768-01 1 169823643 169823643 G C SCYL3 Missense_Mutation p.P646R 0.17 tolerated(0.39) benign(0.005) TCGA-46-3768-01 1 171510347 171510347 A T PRRC2C Missense_Mutation p.S1246C 0.54 unknown(0) TCGA-46-3768-01 1 171511306 171511306 G T PRRC2C Missense_Mutation p.R1565S 0.74 unknown(0) TCGA-46-3768-01 1 176564385 176564385 C A PAPPA2 Missense_Mutation p.L549M 0.20 tolerated(0.12) benign(0.252) TCGA-46-3768-01 1 176769217 176769217 G A PAPPA2 Silent p.R1717R 0.28 TCGA-46-3768-01 1 178820204 178820204 C A ANGPTL1 3'UTR 0.15 TCGA-46-3768-01 1 186277488 186277488 G A PRG4 Silent p.E879E 0.61 TCGA-46-3768-01 1 196881962 196881962 T A CFHR4 Missense_Mutation p.C363S 0.32 deleterious(0) benign(0.171) TCGA-46-3768-01 1 205034927 205034927 T A CNTN2 Missense_Mutation p.I569N 0.20 tolerated(0.69) possibly_damaging(0.721) TCGA-46-3768-01 1 220153567 220153567 C G EPRS Missense_Mutation p.D1191H 0.55 deleterious(0.02) benign(0.41) TCGA-46-3768-01 1 222717398 222717398 G A HHIPL2 Missense_Mutation p.T152I 0.12 tolerated(0.06) probably_damaging(0.999) TCGA-46-3768-01 1 229577157 229577157 C T NUP133 3'UTR 0.24 TCGA-46-3768-01 1 247751925 247751926 - T OR2G2 Frame_Shift_Ins p.W89Lfs*26 0.37 TCGA-46-3768-01 1 247902021 247902021 G - OR14K1 Frame_Shift_Del p.A36Lfs*3 0.18 TCGA-46-3768-01 1 248436684 248436684 A G OR2T33 Missense_Mutation p.S145P 0.27 tolerated(0.05) benign(0.003) TCGA-46-3768-01 1 248512734 248512734 T A OR14C36 Missense_Mutation p.F220I 0.22 deleterious(0.01) possibly_damaging(0.708) TCGA-46-3768-01 1 248737969 248737969 G C OR2T34 Silent p.A30A 0.39 TCGA-46-3768-01 1 248845378 248845378 C A OR14I1 Silent p.V76V 0.22 TCGA-46-3768-01 1 33790576 33790576 C G PHC2 Missense_Mutation p.G823R 0.55 deleterious(0.01) probably_damaging(1) TCGA-46-3768-01 1 39797468 39797468 G T MACF1 Intron 0.66 TCGA-46-3768-01 1 44071241 44071241 G T PTPRF Missense_Mutation p.G1144V 0.54 tolerated(0.1) benign(0.258) TCGA-46-3768-01 1 47685806 47685806 G T TAL1 Missense_Mutation p.S194R 0.73 deleterious(0) probably_damaging(0.979) TCGA-46-3768-01 1 79129525 79129525 C A IFI44 3'UTR 0.78 TCGA-46-3768-01 20 20079402 20079402 C A C20orf26 Missense_Mutation p.P268Q 0.28 deleterious(0.02) probably_damaging(0.984) TCGA-46-3768-01 20 21687473 21687473 G T PAX1 Silent p.L228L 0.67 TCGA-46-3768-01 20 21687474 21687474 G T PAX1 Missense_Mutation p.A229S 0.68 tolerated(0.5) benign(0.007) TCGA-46-3768-01 20 31421598 31421598 A C MAPRE1 Missense_Mutation p.K66T 0.45 deleterious(0.03) benign(0.294) TCGA-46-3768-01 20 44663663 44663663 G A SLC12A5 Silent p.K66K 0.37 TCGA-46-3768-01 20 49177930 49177930 T G PTPN1 Missense_Mutation p.C32G 0.10 tolerated(0.25) possibly_damaging(0.907) TCGA-46-3768-01 20 8769342 8769342 A T PLCB1 Missense_Mutation p.K1084I 0.25 deleterious(0.04) benign(0.226) TCGA-46-3768-01 21 31768868 31768868 G A KRTAP13-1 Missense_Mutation p.R155K 0.49 tolerated(0.1) benign(0.108) TCGA-46-3768-01 22 37333986 37333986 C A CSF2RB Silent p.V712V 0.50 TCGA-46-3768-01 22 39085044 39085044 G C JOSD1 Silent p.L135L 0.45 TCGA-46-3768-01 22 44532354 44532354 G T PARVB Silent p.L249L 0.44 TCGA-46-3768-01 2 109379712 109379712 A G RANBP2 Missense_Mutation p.N906S 0.37 deleterious(0.02) benign(0.022) TCGA-46-3768-01 2 120124593 120124593 C T DBI 5'Flank 0.76 TCGA-46-3768-01 2 128767876 128767876 G A SAP130 Missense_Mutation p.T305M 0.87 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-46-3768-01 2 130725819 130725819 T A RAB6C-AS1 RNA 0.26 TCGA-46-3768-01 2 130792808 130792808 T C FAR2P1 5'Flank 0.23 TCGA-46-3768-01 2 178098960 178098960 C G NFE2L2 Missense_Mutation p.D29H 0.87 deleterious(0) probably_damaging(1) TCGA-46-3768-01 2 17906556 17906556 T C SMC6 Missense_Mutation p.R232G 0.48 tolerated(0.18) possibly_damaging(0.544) TCGA-46-3768-01 2 197157413 197157413 C A HECW2 Missense_Mutation p.R959M 0.93 deleterious(0) probably_damaging(0.974) TCGA-46-3768-01 2 198949015 198949015 T C PLCL1 Silent p.I258I 0.11 TCGA-46-3768-01 2 21232746 21232746 C T APOB Missense_Mutation p.E2332K 0.13 possibly_damaging(0.452) TCGA-46-3768-01 2 220439980 220439980 G T INHA Missense_Mutation p.R278L 0.89 tolerated(0.05) benign(0.258) TCGA-46-3768-01 2 27121593 27121593 G T DPYSL5 Missense_Mutation p.A76S 0.26 tolerated(0.24) possibly_damaging(0.492) TCGA-46-3768-01 2 27800671 27800671 T A C2orf16 Missense_Mutation p.L411Q 0.18 deleterious(0.01) benign(0.004) TCGA-46-3768-01 2 27801331 27801331 G A C2orf16 Missense_Mutation p.C631Y 0.71 tolerated(0.2) benign(0.001) TCGA-46-3768-01 2 27852009 27852009 G T GPN1 Silent p.A42A 0.15 TCGA-46-3768-01 2 27852010 27852010 G T GPN1 Nonsense_Mutation p.G43* 0.16 TCGA-46-3768-01 2 43927638 43927638 A G PLEKHH2 Missense_Mutation p.Y514C 0.15 tolerated(0.17) benign(0.002) TCGA-46-3768-01 2 48027187 48027187 T G MSH6 Missense_Mutation p.F689V 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-46-3768-01 2 58392929 58392929 G T FANCL Silent p.I212I 0.67 TCGA-46-3768-01 2 77746050 77746050 G A LRRTM4 Silent p.C315C 0.23 TCGA-46-3768-01 2 77746622 77746622 G C LRRTM4 Missense_Mutation p.H125D 0.19 tolerated(0.6) benign(0.186) TCGA-46-3768-01 2 86292414 86292414 G A POLR1A Silent p.L681L 0.12 TCGA-46-3768-01 2 89160397 89160397 C A IGKC 5'Flank 0.75 TCGA-46-3768-01 3 108175659 108175659 G T MYH15 Missense_Mutation p.R718S 0.31 deleterious(0.05) benign(0.017) TCGA-46-3768-01 3 111993873 111993873 C A SLC9C1 Splice_Site p.X162_splice 0.19 TCGA-46-3768-01 3 112993496 112993496 G C BOC Silent p.A503A 0.21 TCGA-46-3768-01 3 113858465 113858465 C A DRD3 Missense_Mutation p.G202V 0.28 tolerated(0.27) benign(0.004) TCGA-46-3768-01 3 124641091 124641092 TC - MUC13 Frame_Shift_Del p.K232Tfs*10 0.45 TCGA-46-3768-01 3 127337913 127337913 A T MCM2 Missense_Mutation p.H686L 0.55 tolerated(0.21) benign(0.445) TCGA-46-3768-01 3 129130176 129130176 C G EFCAB12 Missense_Mutation p.R287T 0.58 tolerated(0.06) benign(0.073) TCGA-46-3768-01 3 130159017 130159017 T C COL6A5 Silent p.C1945C 0.08 TCGA-46-3768-01 3 132169490 132169490 G C DNAJC13 Splice_Site p.X113_splice 0.21 TCGA-46-3768-01 3 15677003 15677003 C T BTD Silent p.A39A 0.09 TCGA-46-3768-01 3 164793766 164793766 G C SI Missense_Mutation p.S12C 0.90 tolerated(0.06) possibly_damaging(0.711) TCGA-46-3768-01 3 169846536 169846536 G C PHC3 Missense_Mutation p.P575R 0.83 deleterious(0) probably_damaging(0.999) TCGA-46-3768-01 3 183860854 183860854 G A EIF2B5 Missense_Mutation p.V557I 0.06 deleterious(0.01) possibly_damaging(0.77) TCGA-46-3768-01 3 185316246 185316246 C T SENP2 Silent p.S68S 0.09 TCGA-46-3768-01 3 186980345 186980345 T A MASP1 Missense_Mutation p.H134L 0.20 deleterious(0.04) possibly_damaging(0.836) TCGA-46-3768-01 3 194151920 194151920 C T ATP13A3 Silent p.E819E 0.10 TCGA-46-3768-01 3 194309165 194309165 C T TMEM44 3'UTR 0.21 TCGA-46-3768-01 3 19554758 19554758 G T KCNH8 Missense_Mutation p.K792N 0.38 tolerated(0.05) benign(0.006) TCGA-46-3768-01 3 49692819 49692819 C T BSN Missense_Mutation p.P1944S 0.29 unknown(0) TCGA-46-3768-01 3 57908716 57908716 A G SLMAP Missense_Mutation p.N770S 0.78 tolerated_low_confidence(0.7) benign(0.001) TCGA-46-3768-01 4 10445265 10445265 T A ZNF518B Missense_Mutation p.L896F 0.16 tolerated(0.23) benign(0.001) TCGA-46-3768-01 4 169197228 169197228 T C DDX60 Missense_Mutation p.I695V 0.70 tolerated(0.08) benign(0.076) TCGA-46-3768-01 4 55564640 55564640 A T KIT Missense_Mutation p.K176N 0.45 deleterious(0.02) benign(0.111) TCGA-46-3768-01 4 55964865 55964865 C G KDR Missense_Mutation p.R791P 0.30 deleterious(0) probably_damaging(0.988) TCGA-46-3768-01 4 57796520 57796520 T A REST Missense_Mutation p.V499E 0.07 tolerated(0.07) benign(0.009) TCGA-46-3768-01 4 62542612 62542612 C A LPHN3 Missense_Mutation p.T113N 0.17 deleterious(0) probably_damaging(1) TCGA-46-3768-01 4 71508091 71508091 T G ENAM Missense_Mutation p.I316M 0.71 deleterious(0.02) benign(0.187) TCGA-46-3768-01 4 77290776 77290776 C A CCDC158 Missense_Mutation p.A384S 0.62 tolerated(0.16) probably_damaging(0.987) TCGA-46-3768-01 4 77290777 77290777 C A CCDC158 Splice_Site p.X384_splice 0.58 TCGA-46-3768-01 5 127800548 127800548 A T FBN2 Missense_Mutation p.I232N 0.85 deleterious(0.04) probably_damaging(0.934) TCGA-46-3768-01 5 132097150 132097150 C G SEPT8 Missense_Mutation p.S321T 0.09 deleterious(0.03) probably_damaging(0.993) TCGA-46-3768-01 5 132424810 132424810 C T HSPA4 Missense_Mutation p.P401S 0.12 tolerated(0.38) benign(0.079) TCGA-46-3768-01 5 135692600 135692600 G A TRPC7 Missense_Mutation p.T159M 0.83 deleterious(0) probably_damaging(0.985) TCGA-46-3768-01 5 13793634 13793634 G T DNAH5 Missense_Mutation p.D2738E 0.13 possibly_damaging(0.739) TCGA-46-3768-01 5 14507302 14507302 A T TRIO Missense_Mutation p.H2895L 0.44 unknown(0) TCGA-46-3768-01 5 157166545 157166545 A T THG1L 3'UTR 0.79 TCGA-46-3768-01 5 175308446 175308446 C A CPLX2 3'UTR 0.67 TCGA-46-3768-01 5 180048825 180048825 T C FLT4 Silent p.Q579Q 0.55 TCGA-46-3768-01 5 19544111 19544111 G C CDH18 Nonsense_Mutation p.Y419* 0.11 TCGA-46-3768-01 5 22142567 22142567 T C CDH12 Intron 0.11 TCGA-46-3768-01 5 23527171 23527171 C G PRDM9 Missense_Mutation p.H658Q 0.23 deleterious(0) probably_damaging(0.997) TCGA-46-3768-01 5 26885766 26885766 C A CDH9 Silent p.T613T 0.66 TCGA-46-3768-01 5 31983601 31983601 C G PDZD2 Missense_Mutation p.L273V 0.06 deleterious(0.02) benign(0.275) TCGA-46-3768-01 5 37107698 37107698 C A C5orf42 3'UTR 0.62 TCGA-46-3768-01 5 37379456 37379456 G T WDR70 5'UTR 0.18 TCGA-46-3768-01 5 40998243 40998243 G T MROH2B Missense_Mutation p.Q1557K 0.51 tolerated(1) benign(0.001) TCGA-46-3768-01 5 45262468 45262468 G T HCN1 Missense_Mutation p.P743Q 0.56 tolerated_low_confidence(0.29) benign(0.001) TCGA-46-3768-01 5 45262722 45262722 G C HCN1 Silent p.S658S 0.32 TCGA-46-3768-01 5 45267206 45267206 G A HCN1 Nonsense_Mutation p.R590* 0.61 TCGA-46-3768-01 5 55247854 55247854 T A IL6ST Missense_Mutation p.E534D 0.72 deleterious(0.04) benign(0.062) TCGA-46-3768-01 5 64082402 64082402 A - CWC27 Frame_Shift_Del p.E185Rfs*7 0.45 TCGA-46-3768-01 5 79031807 79031807 C T CMYA5 Missense_Mutation p.P2407S 0.26 benign(0.024) TCGA-46-3768-01 6 100062259 100062259 C A PRDM13 Nonsense_Mutation p.S583* 0.48 TCGA-46-3768-01 6 100896428 100896428 C T SIM1 Missense_Mutation p.E224K 0.34 deleterious(0) probably_damaging(0.971) TCGA-46-3768-01 6 11232826 11232826 G A NEDD9 5'UTR 0.38 TCGA-46-3768-01 6 116381198 116381198 T C FRK Missense_Mutation p.S93G 0.34 tolerated(0.65) benign(0) TCGA-46-3768-01 6 117053519 117053519 A T KPNA5 3'UTR 0.50 TCGA-46-3768-01 6 128222064 128222064 A G THEMIS Missense_Mutation p.L5P 0.25 deleterious(0) probably_damaging(1) TCGA-46-3768-01 6 129712691 129712691 C T LAMA2 Silent p.A1709A 0.27 TCGA-46-3768-01 6 131949222 131949223 CG A MED23 5'UTR 0.25 TCGA-46-3768-01 6 133044143 133044143 G A VNN3 3'UTR 0.48 TCGA-46-3768-01 6 144164604 144164604 G A LTV1 5'UTR 0.34 TCGA-46-3768-01 6 152734570 152734570 A G SYNE1 Silent p.D2049D 0.35 TCGA-46-3768-01 6 158923577 158923577 A G TULP4 Missense_Mutation p.Y961C 0.38 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-46-3768-01 6 161470015 161470015 A T MAP3K4 Silent p.S237S 0.42 TCGA-46-3768-01 6 170151566 170151566 C T TCTE3 5'UTR 0.13 TCGA-46-3768-01 6 26413559 26413559 G T BTN3A1 Missense_Mutation p.R394I 0.60 deleterious(0) probably_damaging(0.996) TCGA-46-3768-01 6 27879772 27879772 G T OR2B2 Missense_Mutation p.S109Y 0.57 deleterious(0) possibly_damaging(0.845) TCGA-46-3768-01 6 28402480 28402480 C - ZSCAN23 Frame_Shift_Del p.G311Afs*66 0.56 TCGA-46-3768-01 6 31500649 31500649 G A DDX39B Silent p.L259L 0.10 TCGA-46-3768-01 6 31644735 31644735 T A LY6G5C Nonstop_Mutation p.*151Lext*52 0.10 TCGA-46-3768-01 6 3737340 3737340 T A PXDC1 Missense_Mutation p.S147C 0.11 tolerated_low_confidence(0.24) possibly_damaging(0.522) TCGA-46-3768-01 6 82950160 82950160 A C IBTK Missense_Mutation p.L15R 0.06 tolerated(0.4) benign(0.005) TCGA-46-3768-01 6 97561919 97561920 - A KLHL32 Frame_Shift_Ins p.R299Afs*16 0.21 TCGA-46-3768-01 7 100552224 100552224 T C MUC3A Silent p.T325T 0.21 TCGA-46-3768-01 7 100866982 100866982 A G ZNHIT1 Missense_Mutation p.Y101C 0.41 deleterious(0) probably_damaging(0.96) TCGA-46-3768-01 7 107323902 107323902 G C SLC26A4 Silent p.T307T 0.36 TCGA-46-3768-01 7 113519573 113519573 C T PPP1R3A Missense_Mutation p.G525D 0.34 tolerated(0.17) benign(0.009) TCGA-46-3768-01 7 114271687 114271687 C T FOXP2 Silent p.L259L 0.43 TCGA-46-3768-01 7 115892000 115892000 G T TES Nonsense_Mutation p.E297* 0.48 TCGA-46-3768-01 7 121753271 121753271 C G AASS Silent p.S393S 0.36 TCGA-46-3768-01 7 126746605 126746605 C A GRM8 Missense_Mutation p.E224D 0.36 deleterious(0.03) probably_damaging(0.994) TCGA-46-3768-01 7 139030286 139030286 C T LUC7L2 Missense_Mutation p.H60Y 0.23 tolerated_low_confidence(0.05) benign(0.043) TCGA-46-3768-01 7 140301390 140301390 G A DENND2A Missense_Mutation p.R270W 0.41 deleterious(0) probably_damaging(0.995) TCGA-46-3768-01 7 141673168 141673168 A T TAS2R38 Missense_Mutation p.W108R 0.46 deleterious(0) probably_damaging(1) TCGA-46-3768-01 7 141800656 141800656 G A MGAM Silent p.G1747G 0.18 TCGA-46-3768-01 7 142379005 142379005 G A MTRNR2L6 3'Flank 0.11 TCGA-46-3768-01 7 142723686 142723686 C G OR9A2 Silent p.G178G 0.41 TCGA-46-3768-01 7 151878701 151878701 T C KMT2C Missense_Mutation p.I2082V 0.42 benign(0.001) TCGA-46-3768-01 7 156981640 156981640 C G UBE3C Intron 0.71 TCGA-46-3768-01 7 21521591 21521591 G A SP4 Missense_Mutation p.G653R 0.11 deleterious(0) possibly_damaging(0.695) TCGA-46-3768-01 7 23207573 23207573 C G KLHL7 Missense_Mutation p.I432M 0.34 deleterious(0.01) possibly_damaging(0.786) TCGA-46-3768-01 7 27141032 27141032 A T HOXA2 Silent p.T148T 0.52 TCGA-46-3768-01 7 31736665 31736665 G C PPP1R17 Missense_Mutation p.D108H 0.33 deleterious_low_confidence(0) probably_damaging(1) TCGA-46-3768-01 7 44807259 44807259 A T ZMIZ2 3'UTR 0.48 TCGA-46-3768-01 7 47859248 47859248 A T C7orf69 3'UTR 0.44 TCGA-46-3768-01 7 47979871 47979871 A G PKD1L1 Silent p.C68C 0.48 TCGA-46-3768-01 7 4820834 4820834 T A AP5Z1 Missense_Mutation p.F24I 0.52 tolerated(0.07) possibly_damaging(0.773) TCGA-46-3768-01 7 72756882 72756882 A T FKBP6 Silent p.T323T 0.41 TCGA-46-3768-01 7 77539631 77539631 A G PHTF2 Silent p.T193T 0.49 TCGA-46-3768-01 7 87196249 87196249 C A ABCB1 Missense_Mutation p.A128S 0.14 tolerated(0.1) benign(0.12) TCGA-46-3768-01 7 90042424 90042424 C G CLDN12 Missense_Mutation p.T145S 0.13 tolerated(0.06) benign(0.014) TCGA-46-3768-01 7 94174935 94174935 C T CASD1 Missense_Mutation p.P519S 0.60 deleterious(0) probably_damaging(1) TCGA-46-3768-01 8 104390442 104390442 C T CTHRC1 Missense_Mutation p.S187L 0.14 tolerated(0.05) benign(0.023) TCGA-46-3768-01 8 106815050 106815050 A G ZFPM2 Missense_Mutation p.I914V 0.49 tolerated(0.9) benign(0.001) TCGA-46-3768-01 8 120759010 120759010 C G TAF2 Missense_Mutation p.A1015P 0.12 tolerated(0.27) benign(0.002) TCGA-46-3768-01 8 12957525 12957525 A T DLC1 Missense_Mutation p.M774K 0.81 deleterious(0) probably_damaging(0.942) TCGA-46-3768-01 8 145999031 145999031 C A ZNF34 Missense_Mutation p.V435L 0.75 tolerated(0.09) possibly_damaging(0.853) TCGA-46-3768-01 8 27468014 27468014 C A CLU Silent p.T25T 0.68 TCGA-46-3768-01 8 2876056 2876056 G T CSMD1 Missense_Mutation p.H2658N 0.68 probably_damaging(0.993) TCGA-46-3768-01 8 30703523 30703523 A T TEX15 Nonsense_Mutation p.L1004* 0.73 TCGA-46-3768-01 8 38832580 38832580 A G HTRA4 Missense_Mutation p.N166S 0.67 deleterious(0.02) benign(0.031) TCGA-46-3768-01 8 52733199 52733199 C T PCMTD1 Silent p.E262E 0.10 TCGA-46-3768-01 8 55534821 55534821 G T RP1 Nonsense_Mutation p.G254* 0.77 TCGA-46-3768-01 8 62212287 62212287 G T CLVS1 5'UTR 0.86 TCGA-46-3768-01 8 77775461 77775461 C A ZFHX4 Missense_Mutation p.P3171T 0.68 probably_damaging(0.996) TCGA-46-3768-01 9 114296103 114296103 A C ZNF483 Missense_Mutation p.K196Q 0.08 tolerated(0.07) possibly_damaging(0.728) TCGA-46-3768-01 9 135975601 135975601 G C RALGDS Intron 0.20 TCGA-46-3768-01 9 27556758 27556758 C T C9orf72 Missense_Mutation p.V298I 0.62 tolerated(0.37) probably_damaging(0.99) TCGA-46-3768-01 9 34241647 34241647 G C UBAP1 Silent p.V272V 0.07 TCGA-46-3768-01 9 4605351 4605351 T C SPATA6L Missense_Mutation p.N304S 0.81 tolerated(0.59) probably_damaging(0.953) TCGA-46-3768-01 9 73235238 73235238 C A TRPM3 Missense_Mutation p.R616L 0.83 tolerated(0.21) benign(0.015) TCGA-46-3768-01 9 79324805 79324805 C A PRUNE2 Silent p.A795A 0.17 TCGA-46-3768-01 9 8317841 8317841 C G PTPRD 3'UTR 0.68 TCGA-46-3768-01 9 86893097 86893097 C T SLC28A3 3'UTR 0.88 TCGA-46-3768-01 9 893917 893917 C T DMRT1 Missense_Mutation p.R182C 0.17 deleterious(0.02) probably_damaging(0.977) TCGA-46-3768-01 9 90500668 90500668 C A SPATA31E1 Silent p.V422V 0.80 TCGA-46-3768-01 9 97864116 97864116 T A FANCC Missense_Mutation p.E517V 0.21 tolerated(0.15) possibly_damaging(0.597) TCGA-46-3768-01 X 102334777 102334778 AG - NXF3 Frame_Shift_Del p.S358Wfs*8 0.42 TCGA-46-3768-01 X 102337150 102337150 G T NXF3 Intron 0.78 TCGA-46-3768-01 X 118724197 118724197 A G NKRF Silent p.S412S 0.88 TCGA-46-3768-01 X 139038229 139038229 C A CXorf66 Missense_Mutation p.K304N 0.30 tolerated(0.12) possibly_damaging(0.895) TCGA-46-3768-01 X 142967551 142967551 A C UBE2NL Missense_Mutation p.N117H 0.44 deleterious(0) probably_damaging(0.969) TCGA-46-3768-01 X 153667172 153667172 G A GDI1 Nonsense_Mutation p.W72* 0.88 TCGA-46-3768-01 X 26213027 26213027 A G MAGEB6 Missense_Mutation p.Y355C 0.81 deleterious(0.04) probably_damaging(0.998) TCGA-46-3768-01 X 37663222 37663222 A - CYBB Frame_Shift_Del p.K331Rfs*12 0.39 TCGA-46-3768-01 X 47070573 47070573 G C UBA1 Missense_Mutation p.V805L 0.09 deleterious(0.04) benign(0.175) TCGA-46-3769-01 10 101656026 101656026 G A DNMBP Nonsense_Mutation p.Q1017* 0.53 TCGA-46-3769-01 10 108336980 108336980 C G SORCS1 Nonstop_Mutation p.*1199Sext*? 0.17 TCGA-46-3769-01 10 115986958 115986958 G T TDRD1 Missense_Mutation p.E1101D 0.30 tolerated(0.06) possibly_damaging(0.801) TCGA-46-3769-01 10 116919865 116919865 C A ATRNL1 Silent p.P298P 0.26 TCGA-46-3769-01 10 118101703 118101703 G C CCDC172 Missense_Mutation p.M146I 0.15 tolerated(1) benign(0) TCGA-46-3769-01 10 118220751 118220751 G A PNLIPRP3 Missense_Mutation p.E253K 0.67 tolerated(0.99) benign(0.007) TCGA-46-3769-01 10 122273500 122273500 G T PPAPDC1A Missense_Mutation p.K81N 0.39 tolerated(0.1) benign(0.335) TCGA-46-3769-01 10 123846008 123846008 G A TACC2 Silent p.R1331R 0.15 TCGA-46-3769-01 10 125447671 125447671 G C GPR26 Missense_Mutation p.E337Q 0.61 deleterious_low_confidence(0) benign(0.086) TCGA-46-3769-01 10 129201358 129201358 G A DOCK1 Missense_Mutation p.E1302K 0.25 tolerated(0.37) possibly_damaging(0.602) TCGA-46-3769-01 10 129905200 129905209 GTCTTGAGCC - MKI67 Frame_Shift_Del p.R1632Hfs*8 0.29 TCGA-46-3769-01 10 16981039 16981039 C A CUBN Missense_Mutation p.A1886S 0.31 tolerated(0.3) benign(0.062) TCGA-46-3769-01 10 17369069 17369070 - C ST8SIA6 Frame_Shift_Ins p.I194Nfs*4 0.24 TCGA-46-3769-01 10 17373464 17373464 C A ST8SIA6 Missense_Mutation p.E155D 0.39 tolerated(0.15) benign(0.272) TCGA-46-3769-01 10 18242259 18242259 C A SLC39A12 Silent p.L18L 0.37 TCGA-46-3769-01 10 23003205 23003205 C G PIP4K2A Missense_Mutation p.K17N 0.35 deleterious(0) probably_damaging(0.979) TCGA-46-3769-01 10 24874831 24874831 C T ARHGAP21 Missense_Mutation p.E1463K 0.37 tolerated(0.06) possibly_damaging(0.602) TCGA-46-3769-01 10 25888314 25888314 G A GPR158 3'UTR 0.36 TCGA-46-3769-01 10 34573173 34573173 C A PARD3 Missense_Mutation p.R1025S 0.11 deleterious(0.03) benign(0.211) TCGA-46-3769-01 10 35467822 35467822 A T CREM Silent p.A58A 0.21 TCGA-46-3769-01 10 38246038 38246038 G A ZNF25 Missense_Mutation p.H50Y 0.13 tolerated(0.53) benign(0.006) TCGA-46-3769-01 10 38343517 38343517 G T ZNF33A Missense_Mutation p.L155F 0.19 tolerated(0.13) benign(0.117) TCGA-46-3769-01 10 43088981 43088981 C A ZNF33B Nonsense_Mutation p.E473* 0.28 TCGA-46-3769-01 10 45486418 45486418 C T RASSF4 Silent p.C236C 0.13 TCGA-46-3769-01 10 45799210 45799210 C A OR13A1 Missense_Mutation p.D221Y 0.12 deleterious(0) probably_damaging(0.995) TCGA-46-3769-01 10 48389447 48389447 G C RBP3 Missense_Mutation p.D477E 0.27 deleterious(0) possibly_damaging(0.504) TCGA-46-3769-01 10 48389621 48389621 C G RBP3 Missense_Mutation p.E419D 0.12 tolerated(0.2) benign(0.006) TCGA-46-3769-01 10 50531521 50531521 T C C10orf71 Silent p.L311L 0.13 TCGA-46-3769-01 10 50574366 50574366 T G DRGX Missense_Mutation p.Y201S 0.34 tolerated(0.36) benign(0.019) TCGA-46-3769-01 10 50916766 50916766 A G C10orf53 3'UTR 0.47 TCGA-46-3769-01 10 52566514 52566514 C T A1CF Missense_Mutation p.R587Q 0.20 tolerated_low_confidence(0.05) benign(0.027) TCGA-46-3769-01 10 55839174 55839174 G A PCDH15 Silent p.L670L 0.17 TCGA-46-3769-01 10 55973758 55973758 C G PCDH15 Missense_Mutation p.E346Q 0.23 tolerated(0.11) benign(0.053) TCGA-46-3769-01 10 56106233 56106233 A G PCDH15 Silent p.V162V 0.25 TCGA-46-3769-01 10 60146077 60146077 A G TFAM Missense_Mutation p.I67V 0.16 tolerated(0.47) benign(0.003) TCGA-46-3769-01 10 64943277 64943277 T C JMJD1C Silent p.E2338E 0.27 TCGA-46-3769-01 10 69961673 69961673 G A MYPN Missense_Mutation p.R1194H 0.10 deleterious(0) probably_damaging(0.999) TCGA-46-3769-01 10 70719870 70719870 G A DDX21 Silent p.K132K 0.22 TCGA-46-3769-01 10 70863695 70863695 G T SRGN Missense_Mutation p.G99V 0.13 deleterious(0) probably_damaging(1) TCGA-46-3769-01 10 71899758 71899758 C G TYSND1 Silent p.L541L 0.14 TCGA-46-3769-01 10 71917543 71917543 C A SAR1A Missense_Mutation p.V109L 0.37 tolerated(0.48) benign(0) TCGA-46-3769-01 10 72503416 72503416 C G ADAMTS14 Silent p.V682V 0.36 TCGA-46-3769-01 10 72531032 72531032 G A TBATA 3'UTR 0.12 TCGA-46-3769-01 10 73046577 73046577 G C UNC5B Missense_Mutation p.K228N 0.23 deleterious(0.02) probably_damaging(0.948) TCGA-46-3769-01 10 73501524 73501524 C G CDH23 Missense_Mutation p.S1569C 0.33 tolerated(0.17) probably_damaging(0.982) TCGA-46-3769-01 10 75550015 75550015 G T ZSWIM8 Silent p.L302L 0.05 TCGA-46-3769-01 10 79777381 79777381 C A POLR3A Silent p.L461L 0.11 TCGA-46-3769-01 10 81373497 81373497 C T SFTPA1 Silent p.L140L 0.26 TCGA-46-3769-01 10 85968559 85968559 G C CDHR1 Silent p.L414L 0.18 TCGA-46-3769-01 10 95347066 95347066 C G FFAR4 Silent p.L278L 0.41 TCGA-46-3769-01 10 99003889 99003889 G A ARHGAP19 Missense_Mutation p.H341Y 0.24 deleterious(0.04) benign(0.023) TCGA-46-3769-01 11 101834216 101834216 A C KIAA1377 Missense_Mutation p.Q817P 0.38 tolerated(0.06) probably_damaging(0.917) TCGA-46-3769-01 11 108198393 108198393 A T ATM Missense_Mutation p.T2333S 0.08 deleterious(0) benign(0.012) TCGA-46-3769-01 11 108382262 108382262 G C EXPH5 Silent p.L1324L 0.42 TCGA-46-3769-01 11 110128828 110128828 T A RDX Intron 0.42 TCGA-46-3769-01 11 110456944 110456944 G C ARHGAP20 Missense_Mutation p.Q471E 0.15 deleterious(0.01) benign(0.144) TCGA-46-3769-01 11 113075051 113075051 C G NCAM1 Silent p.P116P 0.35 TCGA-46-3769-01 11 114401497 114401497 T A NXPE1 5'UTR 0.36 TCGA-46-3769-01 11 116693478 116693478 C T APOA4 Missense_Mutation p.D25N 0.38 deleterious(0.01) possibly_damaging(0.49) TCGA-46-3769-01 11 118967642 118967642 G A DPAGT1 3'UTR 0.28 TCGA-46-3769-01 11 119983087 119983088 - A TRIM29 3'UTR 0.26 TCGA-46-3769-01 11 121476146 121476146 C T SORL1 Missense_Mutation p.T1605I 0.33 deleterious(0) possibly_damaging(0.848) TCGA-46-3769-01 11 121485651 121485651 C G SORL1 Missense_Mutation p.L1831V 0.30 tolerated(0.64) benign(0.02) TCGA-46-3769-01 11 123676886 123676886 A T OR6M1 Missense_Mutation p.Y58N 0.14 deleterious(0) probably_damaging(0.925) TCGA-46-3769-01 11 123814316 123814316 A T OR6T1 Missense_Mutation p.V77E 0.42 deleterious(0) probably_damaging(0.969) TCGA-46-3769-01 11 123893820 123893820 T A OR10G9 Missense_Mutation p.V34E 0.15 deleterious(0) benign(0.258) TCGA-46-3769-01 11 124135437 124135437 G T OR8G5 Nonsense_Mutation p.G239* 0.41 TCGA-46-3769-01 11 124135727 124135727 C A OR8G5 Silent p.A335A 0.28 TCGA-46-3769-01 11 124135728 124135728 C A OR8G5 Missense_Mutation p.L336M 0.28 deleterious_low_confidence(0.05) benign(0.401) TCGA-46-3769-01 11 124189302 124189302 G T OR8D2 Silent p.S264S 0.14 TCGA-46-3769-01 11 124756551 124756551 G T ROBO4 Missense_Mutation p.P868H 0.24 deleterious(0.02) possibly_damaging(0.893) TCGA-46-3769-01 11 124793658 124793658 C A HEPACAM Missense_Mutation p.G226C 0.23 tolerated(0.11) possibly_damaging(0.653) TCGA-46-3769-01 11 1261425 1261425 G A MUC5B Missense_Mutation p.E1264K 0.46 unknown(0) TCGA-46-3769-01 11 128710133 128710133 G C KCNJ1 Missense_Mutation p.F21L 0.20 tolerated(0.36) benign(0.001) TCGA-46-3769-01 11 18158752 18158752 G C MRGPRX3 Translation_Start_Site p.M1? 0.41 deleterious(0.04) benign(0.318) TCGA-46-3769-01 11 2604670 2604670 A T KCNQ1 Silent p.T309T 0.17 TCGA-46-3769-01 11 27371728 27371728 G C CCDC34 Intron 0.32 TCGA-46-3769-01 11 27680064 27680064 C T BDNF Missense_Mutation p.M98I 0.25 tolerated(0.98) possibly_damaging(0.584) TCGA-46-3769-01 11 30032317 30032317 C T KCNA4 Missense_Mutation p.E637K 0.29 tolerated_low_confidence(0.37) benign(0.3) TCGA-46-3769-01 11 31113054 31113054 C A DCDC1 Missense_Mutation p.G708V 0.45 deleterious(0) benign(0.331) TCGA-46-3769-01 11 31327851 31327851 C A DCDC1 Silent p.V173V 0.22 TCGA-46-3769-01 11 31815649 31815649 G T PAX6 Silent p.T246T 0.12 TCGA-46-3769-01 11 32417924 32417924 C A WT1 Silent p.P376P 0.33 TCGA-46-3769-01 11 32450097 32450097 A G WT1 Missense_Mutation p.F239L 0.28 tolerated_low_confidence(0.16) benign(0.067) TCGA-46-3769-01 11 32635972 32635972 G C CCDC73 Missense_Mutation p.S631W 0.32 deleterious(0.04) probably_damaging(0.99) TCGA-46-3769-01 11 32956358 32956358 G T QSER1 Missense_Mutation p.S1056I 0.15 tolerated(0.15) benign(0.33) TCGA-46-3769-01 11 33572687 33572687 G C KIAA1549L Silent p.V904V 0.39 TCGA-46-3769-01 11 36511715 36511715 C T TRAF6 Missense_Mutation p.M414I 0.29 deleterious(0.01) probably_damaging(0.987) TCGA-46-3769-01 11 36595604 36595604 G T RAG1 Missense_Mutation p.K250N 0.14 tolerated_low_confidence(0.11) probably_damaging(0.966) TCGA-46-3769-01 11 40137549 40137549 G C LRRC4C Missense_Mutation p.H98Q 0.12 tolerated(0.1) benign(0.131) TCGA-46-3769-01 11 4608328 4608328 C T OR52I2 Silent p.L96L 0.14 TCGA-46-3769-01 11 47238436 47238436 C G DDB2 Missense_Mutation p.L98V 0.30 tolerated(0.06) probably_damaging(0.99) TCGA-46-3769-01 11 47312322 47312322 C T MADD Silent p.L1106L 0.25 TCGA-46-3769-01 11 48239093 48239093 G C OR4B1 Silent p.V244V 0.07 TCGA-46-3769-01 11 4869826 4869826 A G OR51S1 Missense_Mutation p.Y205H 0.31 deleterious(0) probably_damaging(0.999) TCGA-46-3769-01 11 4869963 4869963 C T OR51S1 Missense_Mutation p.R159Q 0.12 deleterious(0.01) benign(0.161) TCGA-46-3769-01 11 49175984 49175984 C G FOLH1 Missense_Mutation p.V562L 0.23 deleterious(0.01) probably_damaging(0.992) TCGA-46-3769-01 11 5153427 5153427 C A OR52A5 Missense_Mutation p.G149V 0.21 tolerated(0.48) benign(0.006) TCGA-46-3769-01 11 55065358 55065358 C A TRIM51HP RNA 0.39 TCGA-46-3769-01 11 55433256 55433256 G T OR4C6 Missense_Mutation p.C205F 0.18 deleterious_low_confidence(0) possibly_damaging(0.863) TCGA-46-3769-01 11 55540949 55540949 C A OR5D13 Silent p.P12P 0.21 TCGA-46-3769-01 11 55587261 55587261 C G OR5D18 Missense_Mutation p.I52M 0.12 tolerated(0.05) benign(0.025) TCGA-46-3769-01 11 55595417 55595417 T C OR5L2 Silent p.C241C 0.35 TCGA-46-3769-01 11 55653083 55653083 G T TRIM51 Missense_Mutation p.R60L 0.27 tolerated(0.23) benign(0.166) TCGA-46-3769-01 11 55861081 55861081 C G OR8I2 Missense_Mutation p.Q100E 0.13 deleterious(0.01) probably_damaging(0.978) TCGA-46-3769-01 11 55944717 55944717 G T OR5J2 Missense_Mutation p.M208I 0.19 tolerated(1) benign(0.006) TCGA-46-3769-01 11 56086566 56086567 - G OR8K3 Frame_Shift_Ins p.K262Rfs*7 0.15 TCGA-46-3769-01 11 56230190 56230190 C T OR5M9 Missense_Mutation p.D230N 0.55 deleterious(0.02) benign(0.02) TCGA-46-3769-01 11 56431331 56431331 C G OR5AR1 Missense_Mutation p.T57R 0.21 deleterious(0) probably_damaging(0.913) TCGA-46-3769-01 11 56468215 56468215 G C OR9G1 Missense_Mutation p.A118P 0.07 deleterious(0) probably_damaging(0.998) TCGA-46-3769-01 11 56949613 56949613 C G LRRC55 Silent p.P82P 0.20 TCGA-46-3769-01 11 58207465 58207465 G C OR5B12 Missense_Mutation p.H54D 0.28 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-46-3769-01 11 59211286 59211286 C G OR5A1 Silent p.L215L 0.32 TCGA-46-3769-01 11 59282638 59282638 C A OR4D9 Missense_Mutation p.L85I 0.25 deleterious(0.03) benign(0.242) TCGA-46-3769-01 11 59574004 59574004 C G MRPL16 Missense_Mutation p.S191T 0.14 tolerated(0.1) benign(0.118) TCGA-46-3769-01 11 60105243 60105243 G C MS4A6E Silent p.L59L 0.11 TCGA-46-3769-01 11 60687196 60687196 G T TMEM109 Nonsense_Mutation p.G11* 0.37 TCGA-46-3769-01 11 60785239 60785239 G A CD6 Missense_Mutation p.E531K 0.15 deleterious(0.03) possibly_damaging(0.521) TCGA-46-3769-01 11 60971058 60971058 G C PGA3 Missense_Mutation p.G8R 0.35 tolerated(0.08) benign(0.444) TCGA-46-3769-01 11 61919412 61919412 C G INCENP Silent p.V907V 0.22 TCGA-46-3769-01 11 62532846 62532846 C - POLR2G Frame_Shift_Del p.N124Tfs*13 0.16 TCGA-46-3769-01 11 6261502 6261502 C A CNGA4 Missense_Mutation p.R160S 0.20 deleterious(0) possibly_damaging(0.844) TCGA-46-3769-01 11 63230888 63230888 G A HRASLS5 3'UTR 0.22 TCGA-46-3769-01 11 65267905 65267905 G A MALAT1 RNA 0.35 TCGA-46-3769-01 11 65268000 65268000 G C MALAT1 RNA 0.24 TCGA-46-3769-01 11 67413199 67413199 G A ACY3 Silent p.H132H 0.57 TCGA-46-3769-01 11 6942862 6942862 C A OR2D3 Missense_Mutation p.S210R 0.42 tolerated(0.56) benign(0.003) TCGA-46-3769-01 11 6977732 6977732 T A ZNF215 Missense_Mutation p.H508Q 0.30 deleterious(0) probably_damaging(0.997) TCGA-46-3769-01 11 6977739 6977739 C A ZNF215 Missense_Mutation p.L511M 0.38 tolerated(0.05) possibly_damaging(0.776) TCGA-46-3769-01 11 69951865 69951865 T - ANO1 Frame_Shift_Del p.F241Sfs*14 0.12 TCGA-46-3769-01 11 70200404 70200404 C A PPFIA1 Intron 0.46 TCGA-46-3769-01 11 7059931 7059931 G T NLRP14 Missense_Mutation p.M38I 0.20 tolerated(0.49) benign(0.003) TCGA-46-3769-01 11 7059932 7059932 G T NLRP14 Nonsense_Mutation p.E39* 0.20 TCGA-46-3769-01 11 71293514 71293514 G A KRTAP5-11 Missense_Mutation p.P124S 0.10 deleterious_low_confidence(0.05) unknown(0) TCGA-46-3769-01 11 71511620 71511620 G C FAM86C1 3'UTR 0.33 TCGA-46-3769-01 11 73020284 73020284 C A ARHGEF17 Missense_Mutation p.Q201K 0.44 tolerated_low_confidence(0.59) benign(0.011) TCGA-46-3769-01 11 76162994 76162994 G C C11orf30 Missense_Mutation p.V55L 0.08 tolerated_low_confidence(0.05) benign(0.279) TCGA-46-3769-01 11 7817698 7817698 A T OR5P2 Silent p.T264T 0.15 TCGA-46-3769-01 11 78285425 78285425 G C NARS2 Missense_Mutation p.Q37E 0.60 tolerated(0.45) benign(0.004) TCGA-46-3769-01 11 82924097 82924097 T C ANKRD42 Intron 0.37 TCGA-46-3769-01 11 82924430 82924430 G A ANKRD42 Intron 0.14 TCGA-46-3769-01 11 85447559 85447559 G C SYTL2 Missense_Mutation p.Q190E 0.30 tolerated(0.11) probably_damaging(0.983) TCGA-46-3769-01 11 8737282 8737282 C A ST5 Missense_Mutation p.K571N 0.18 tolerated(0.17) probably_damaging(0.999) TCGA-46-3769-01 11 92533735 92533735 G C FAT3 Missense_Mutation p.R2519P 0.27 benign(0.038) TCGA-46-3769-01 11 92600001 92600001 A T FAT3 Missense_Mutation p.H3918L 0.44 probably_damaging(1) TCGA-46-3769-01 11 92881849 92881849 C A SLC36A4 Missense_Mutation p.A457S 0.24 tolerated(1) benign(0.049) TCGA-46-3769-01 11 94861787 94861787 G A ENDOD1 Missense_Mutation p.D183N 0.31 deleterious(0.03) benign(0.075) TCGA-46-3769-01 11 9861114 9861114 C A SBF2 Missense_Mutation p.S1129I 0.28 deleterious(0.01) benign(0.252) TCGA-46-3769-01 12 101870686 101870686 G T SPIC Splice_Site p.X1_splice 0.39 TCGA-46-3769-01 12 102315101 102315101 G A DRAM1 3'UTR 0.42 TCGA-46-3769-01 12 104190720 104190720 G C NT5DC3 Silent p.L235L 0.31 TCGA-46-3769-01 12 105600901 105600901 C A APPL2 Missense_Mutation p.A193S 0.30 tolerated(0.14) possibly_damaging(0.634) TCGA-46-3769-01 12 106460588 106460588 G C NUAK1 Missense_Mutation p.L660V 0.08 deleterious(0) probably_damaging(0.996) TCGA-46-3769-01 12 106824224 106824224 G A POLR3B Silent p.L479L 0.38 TCGA-46-3769-01 12 108685783 108685783 C A CMKLR1 Missense_Mutation p.M319I 0.43 tolerated(0.09) benign(0.034) TCGA-46-3769-01 12 109843825 109843825 C T MYO1H Silent p.I300I 0.40 TCGA-46-3769-01 12 110495092 110495092 C T C12orf76 Silent p.K67K 0.27 TCGA-46-3769-01 12 11061945 11061945 C G TAS2R13 5'UTR 0.22 TCGA-46-3769-01 12 11081921 11081921 C A PRH2 Missense_Mutation p.Q17K 0.31 deleterious_low_confidence(0.04) benign(0.092) TCGA-46-3769-01 12 112654880 112654880 G A HECTD4 Silent p.P2252P 0.33 TCGA-46-3769-01 12 115114170 115114170 G A TBX3 Silent p.F349F 0.24 TCGA-46-3769-01 12 115120647 115120647 C A TBX3 Missense_Mutation p.G120V 0.28 deleterious(0) probably_damaging(1) TCGA-46-3769-01 12 119624881 119624881 C A HSPB8 Missense_Mutation p.T140K 0.46 deleterious(0) probably_damaging(1) TCGA-46-3769-01 12 12303970 12303970 G A LRP6 Missense_Mutation p.P932S 0.16 deleterious(0) probably_damaging(1) TCGA-46-3769-01 12 124303771 124303771 G T DNAH10 Missense_Mutation p.G1207V 0.72 possibly_damaging(0.569) TCGA-46-3769-01 12 125397817 125397817 G A UBC Silent p.L167L 0.32 TCGA-46-3769-01 12 126138695 126138695 G C TMEM132B Missense_Mutation p.R892S 0.23 deleterious(0) probably_damaging(0.999) TCGA-46-3769-01 12 13769432 13769432 A T GRIN2B Missense_Mutation p.C429S 0.28 deleterious(0.01) probably_damaging(0.973) TCGA-46-3769-01 12 14577231 14577231 G T ATF7IP Nonsense_Mutation p.E128* 0.59 TCGA-46-3769-01 12 21069268 21069268 A T SLCO1B3 3'UTR 0.38 TCGA-46-3769-01 12 21958144 21958144 A C ABCC9 Intron 0.07 TCGA-46-3769-01 12 2659802 2659802 C A CACNA1C Intron 0.58 TCGA-46-3769-01 12 2693757 2693757 G T CACNA1C Missense_Mutation p.E771D 0.28 tolerated(0.08) benign(0.361) TCGA-46-3769-01 12 2702441 2702441 C T CACNA1C Missense_Mutation p.L865F 0.13 tolerated(0.06) possibly_damaging(0.632) TCGA-46-3769-01 12 27553476 27553476 A G ARNTL2 Missense_Mutation p.K310R 0.11 tolerated(0.2) benign(0.318) TCGA-46-3769-01 12 27849721 27849721 C A REP15 Missense_Mutation p.L76M 0.55 deleterious(0.01) probably_damaging(0.999) TCGA-46-3769-01 12 28116594 28116594 C T PTHLH Missense_Mutation p.E71K 0.48 deleterious(0.02) probably_damaging(0.993) TCGA-46-3769-01 12 2906971 2906971 A G FKBP4 Silent p.P109P 0.11 TCGA-46-3769-01 12 29639211 29639211 T C OVCH1 Silent p.Q321Q 0.17 TCGA-46-3769-01 12 32137137 32137137 A T KIAA1551 Missense_Mutation p.Q1083L 0.07 tolerated(0.07) benign(0.154) TCGA-46-3769-01 12 32974420 32974420 T C PKP2 Missense_Mutation p.K672R 0.16 tolerated(0.68) benign(0.02) TCGA-46-3769-01 12 41327314 41327314 A T CNTN1 Missense_Mutation p.Y252F 0.47 tolerated(0.1) benign(0.013) TCGA-46-3769-01 12 427394 427394 C G KDM5A Silent p.L925L 0.59 TCGA-46-3769-01 12 46591814 46591814 C G SLC38A1 Missense_Mutation p.K384N 0.22 tolerated(0.31) benign(0.383) TCGA-46-3769-01 12 49176824 49176824 G A ADCY6 Missense_Mutation p.R132C 0.38 deleterious(0.01) possibly_damaging(0.794) TCGA-46-3769-01 12 49230475 49230475 C G DDX23 Silent p.R371R 0.32 TCGA-46-3769-01 12 50149493 50149493 G T TMBIM6 Nonsense_Mutation p.E139* 0.42 TCGA-46-3769-01 12 50186285 50186285 A T NCKAP5L Missense_Mutation p.S1246T 0.41 tolerated(0.53) benign(0.007) TCGA-46-3769-01 12 50498416 50498416 C A GPD1 Missense_Mutation p.P34Q 0.50 tolerated(0.14) benign(0.05) TCGA-46-3769-01 12 51851227 51851227 C T SLC4A8 Nonsense_Mutation p.Q223* 0.28 TCGA-46-3769-01 12 51851228 51851228 A C SLC4A8 Missense_Mutation p.Q223P 0.28 deleterious(0) probably_damaging(0.997) TCGA-46-3769-01 12 52758919 52758919 C T KRT85 Silent p.E152E 0.52 TCGA-46-3769-01 12 53096844 53096844 C G KRT77 Silent p.G125G 0.13 TCGA-46-3769-01 12 54106841 54106841 G A CALCOCO1 Intron 0.31 TCGA-46-3769-01 12 55794480 55794480 T A OR6C65 Silent p.P56P 0.22 TCGA-46-3769-01 12 57910229 57910229 C T MARS Silent p.V856V 0.22 TCGA-46-3769-01 12 6138553 6138553 C A VWF Missense_Mutation p.W974C 0.66 deleterious(0) probably_damaging(0.994) TCGA-46-3769-01 12 6138585 6138585 G A VWF Silent p.L964L 0.65 TCGA-46-3769-01 12 64854058 64854058 G T TBK1 Missense_Mutation p.L59F 0.18 deleterious(0) probably_damaging(1) TCGA-46-3769-01 12 6575181 6575181 G A VAMP1 Intron 0.27 TCGA-46-3769-01 12 6692675 6692675 G T CHD4 Intron 0.63 TCGA-46-3769-01 12 6925470 6925470 C T CD4 Nonsense_Mutation p.Q286* 0.69 TCGA-46-3769-01 12 7090191 7090191 C A LPCAT3 Missense_Mutation p.D218Y 0.17 deleterious(0) probably_damaging(0.994) TCGA-46-3769-01 12 71092078 71092078 C G PTPRR Missense_Mutation p.G416R 0.14 deleterious(0.03) benign(0.13) TCGA-46-3769-01 12 8212271 8212271 T A C3AR1 Nonsense_Mutation p.R171* 0.23 TCGA-46-3769-01 12 85432046 85432046 G T LRRIQ1 Missense_Mutation p.S31I 0.41 deleterious(0) probably_damaging(0.968) TCGA-46-3769-01 12 93100523 93100523 G T C12orf74 Missense_Mutation p.R39L 0.20 deleterious(0) probably_damaging(0.999) TCGA-46-3769-01 13 100181719 100181719 A T TM9SF2 Splice_Site p.X112_splice 0.14 TCGA-46-3769-01 13 100925585 100925585 G C PCCA Missense_Mutation p.M350I 0.40 deleterious(0) probably_damaging(1) TCGA-46-3769-01 13 113814408 113814408 G A PROZ Missense_Mutation p.E73K 0.30 tolerated(0.37) benign(0.22) TCGA-46-3769-01 13 113893744 113893744 C T CUL4A Intron 0.18 TCGA-46-3769-01 13 21189974 21189974 C G IFT88 Silent p.L394L 0.23 TCGA-46-3769-01 13 21219051 21219051 T A IFT88 Missense_Mutation p.F644I 0.19 tolerated(0.14) benign(0.18) TCGA-46-3769-01 13 21562336 21562336 G A LATS2 Missense_Mutation p.S528L 0.40 tolerated(0.12) benign(0.052) TCGA-46-3769-01 13 25480240 25480240 C T CENPJ Missense_Mutation p.E646K 0.14 tolerated(0.43) benign(0.02) TCGA-46-3769-01 13 29001924 29001924 A G FLT1 Missense_Mutation p.V414A 0.21 deleterious(0) benign(0.142) TCGA-46-3769-01 13 38213200 38213200 C A TRPC4 Missense_Mutation p.G735C 0.16 deleterious(0) probably_damaging(0.994) TCGA-46-3769-01 13 38229236 38229236 G T TRPC4 Missense_Mutation p.Q625K 0.12 deleterious(0.03) possibly_damaging(0.646) TCGA-46-3769-01 13 39264956 39264956 G T FREM2 Missense_Mutation p.V1159L 0.13 tolerated(0.17) benign(0.082) TCGA-46-3769-01 13 39266606 39266606 C G FREM2 Missense_Mutation p.L1709V 0.19 tolerated(0.05) benign(0.08) TCGA-46-3769-01 13 41379369 41379369 G C SLC25A15 Missense_Mutation p.G144R 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-46-3769-01 13 45857747 45857747 A - GTF2F2 3'UTR 0.17 TCGA-46-3769-01 13 66879051 66879051 T A PCDH9 Silent p.P1150P 0.25 TCGA-46-3769-01 13 77739409 77739409 T A MYCBP2 Missense_Mutation p.E2115V 0.28 probably_damaging(0.985) TCGA-46-3769-01 13 84454785 84454785 C - SLITRK1 Frame_Shift_Del p.P287Qfs*39 0.15 TCGA-46-3769-01 13 96086270 96086270 C T CLDN10 Silent p.C61C 0.24 TCGA-46-3769-01 14 100808747 100808747 C A WARS Missense_Mutation p.Q367H 0.31 deleterious(0) possibly_damaging(0.88) TCGA-46-3769-01 14 100808790 100808790 C A WARS Missense_Mutation p.S353I 0.47 deleterious(0) probably_damaging(0.956) TCGA-46-3769-01 14 101010249 101010249 G C BEGAIN Silent p.L99L 0.38 TCGA-46-3769-01 14 101347449 101347449 C A RTL1 Missense_Mutation p.G1226V 0.18 deleterious_low_confidence(0) possibly_damaging(0.708) TCGA-46-3769-01 14 103406189 103406189 C T CDC42BPB Missense_Mutation p.E1563K 0.36 tolerated(0.06) benign(0.317) TCGA-46-3769-01 14 103406192 103406192 C T CDC42BPB Missense_Mutation p.E1562K 0.37 deleterious(0.04) benign(0.211) TCGA-46-3769-01 14 104470664 104470664 G C TDRD9 Missense_Mutation p.E525Q 0.25 deleterious(0.02) probably_damaging(0.971) TCGA-46-3769-01 14 105410407 105410407 T C AHNAK2 Missense_Mutation p.K3794R 0.36 probably_damaging(0.953) TCGA-46-3769-01 14 105414568 105414568 G C AHNAK2 Missense_Mutation p.P2407R 0.17 benign(0.008) TCGA-46-3769-01 14 106552558 106552558 C A IGHV3-9 Silent p.G27G 0.37 TCGA-46-3769-01 14 106586427 106586427 C T IGHV3-13 Missense_Mutation p.E20K 0.21 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-46-3769-01 14 106622165 106622165 C A IGHV3-16 Missense_Mutation p.G27V 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.806) TCGA-46-3769-01 14 106725423 106725423 G C IGHV3-23 Silent p.A43A 0.16 TCGA-46-3769-01 14 106815779 106815779 C A IGHV3-33 Silent p.L98L 0.16 TCGA-46-3769-01 14 106926233 106926233 G T IGHV3-43 Missense_Mutation p.N103K 0.10 deleterious_low_confidence(0.02) benign(0.178) TCGA-46-3769-01 14 19563531 19563531 C A POTEG Missense_Mutation p.H349N 0.08 tolerated(0.32) benign(0.369) TCGA-46-3769-01 14 20249222 20249222 C A OR4M1 Silent p.T247T 0.08 TCGA-46-3769-01 14 20296240 20296240 T A OR4N2 Missense_Mutation p.F211L 0.12 deleterious(0.01) possibly_damaging(0.539) TCGA-46-3769-01 14 20444459 20444459 G T OR4K15 Missense_Mutation p.R261L 0.27 tolerated(1) benign(0.037) TCGA-46-3769-01 14 22938210 22938210 C A TRDV3 Missense_Mutation p.R55L 0.63 deleterious(0.01) probably_damaging(0.999) TCGA-46-3769-01 14 23874503 23874503 C G MYH6 Missense_Mutation p.G144A 0.46 deleterious(0.01) possibly_damaging(0.825) TCGA-46-3769-01 14 23874944 23874944 C G MYH6 Missense_Mutation p.Q79H 0.16 deleterious(0) possibly_damaging(0.896) TCGA-46-3769-01 14 24735655 24735655 C A RABGGTA Missense_Mutation p.E512D 0.10 tolerated(0.2) benign(0.334) TCGA-46-3769-01 14 29237355 29237355 G C FOXG1 Silent p.A290A 0.15 TCGA-46-3769-01 14 30100056 30100056 T A PRKD1 Missense_Mutation p.S522C 0.48 deleterious(0.03) benign(0.32) TCGA-46-3769-01 14 31354783 31354783 C A COCH Missense_Mutation p.P306H 0.19 deleterious(0.05) possibly_damaging(0.819) TCGA-46-3769-01 14 34419656 34419656 C A EGLN3 Silent p.L101L 0.28 TCGA-46-3769-01 14 34419657 34419657 A G EGLN3 Missense_Mutation p.L101P 0.30 deleterious(0) probably_damaging(0.937) TCGA-46-3769-01 14 35182474 35182474 T C CFL2 Silent p.L99L 0.19 TCGA-46-3769-01 14 50201309 50201309 G A KLHDC1 Missense_Mutation p.D276N 0.30 deleterious(0) probably_damaging(1) TCGA-46-3769-01 14 50626482 50626482 C T SOS2 Missense_Mutation p.E507K 0.36 deleterious(0) possibly_damaging(0.826) TCGA-46-3769-01 14 50671113 50671113 C A SOS2 Silent p.V34V 0.26 TCGA-46-3769-01 14 51219373 51219373 C A NIN Nonsense_Mutation p.E1605* 0.16 TCGA-46-3769-01 14 53513567 53513567 C A DDHD1 Missense_Mutation p.L874F 0.25 tolerated(0.52) possibly_damaging(0.716) TCGA-46-3769-01 14 57272080 57272080 G - OTX2 Frame_Shift_Del p.P32Rfs*27 0.31 TCGA-46-3769-01 14 60069930 60069930 C G RTN1 Missense_Mutation p.Q743H 0.30 deleterious(0) probably_damaging(0.999) TCGA-46-3769-01 14 64606673 64606673 C T SYNE2 Missense_Mutation p.S4953L 0.09 possibly_damaging(0.876) TCGA-46-3769-01 14 71568774 71568774 A T PCNX Missense_Mutation p.E1886V 0.32 deleterious(0) probably_damaging(0.948) TCGA-46-3769-01 14 74971752 74971752 C T LTBP2 Missense_Mutation p.E1435K 0.45 deleterious(0.01) possibly_damaging(0.642) TCGA-46-3769-01 14 75366627 75366627 G A DLST Silent p.V301V 0.11 TCGA-46-3769-01 14 76286427 76286427 C T TTLL5 Silent p.I1083I 0.50 TCGA-46-3769-01 14 77255657 77255657 C A ANGEL1 Missense_Mutation p.A643S 0.26 tolerated(0.67) benign(0.145) TCGA-46-3769-01 14 78397912 78397912 C A ADCK1 Missense_Mutation p.L420I 0.16 tolerated(0.3) benign(0.219) TCGA-46-3769-01 14 81670361 81670361 G A GTF2A1 Missense_Mutation p.H74Y 0.67 deleterious(0) benign(0.01) TCGA-46-3769-01 14 94046632 94046632 G T UNC79 Missense_Mutation p.E680D 0.24 tolerated(0.21) benign(0.034) TCGA-46-3769-01 14 95030031 95030031 C A SERPINA4 Missense_Mutation p.P71Q 0.15 tolerated(0.09) probably_damaging(0.984) TCGA-46-3769-01 14 95033402 95033402 G T SERPINA4 Missense_Mutation p.D249Y 0.32 deleterious(0.01) possibly_damaging(0.635) TCGA-46-3769-01 14 95109887 95109887 C A SERPINA13P RNA 0.36 TCGA-46-3769-01 14 95109888 95109888 C A SERPINA13P RNA 0.33 TCGA-46-3769-01 14 96807901 96807901 C T ATG2B Silent p.L294L 0.22 TCGA-46-3769-01 15 20488784 20488784 G T CHEK2P2 RNA 0.07 TCGA-46-3769-01 15 25432755 25432755 C A SNORD115-10 RNA 0.41 TCGA-46-3769-01 15 32929102 32929102 G C ARHGAP11A Missense_Mutation p.D710H 0.54 deleterious(0.01) possibly_damaging(0.88) TCGA-46-3769-01 15 33991934 33991934 C A RYR3 Nonsense_Mutation p.C2093* 0.32 TCGA-46-3769-01 15 34065783 34065783 C A RYR3 Missense_Mutation p.S3035Y 0.31 possibly_damaging(0.482) TCGA-46-3769-01 15 34131112 34131112 G T RYR3 Nonsense_Mutation p.E4311* 0.32 TCGA-46-3769-01 15 37187378 37187378 T A MEIS2 Missense_Mutation p.Q374L 0.42 tolerated(0.05) possibly_damaging(0.889) TCGA-46-3769-01 15 37390191 37390191 C A MEIS2 Missense_Mutation p.K74N 0.30 deleterious(0) probably_damaging(0.98) TCGA-46-3769-01 15 41680695 41680695 G C NDUFAF1 Missense_Mutation p.S262C 0.36 deleterious(0.03) probably_damaging(0.992) TCGA-46-3769-01 15 42442310 42442310 C A PLA2G4F Silent p.V305V 0.56 TCGA-46-3769-01 15 43641146 43641146 G A ADAL Silent p.L198L 0.47 TCGA-46-3769-01 15 48459545 48459545 C - MYEF2 Splice_Site p.X141_splice 0.25 TCGA-46-3769-01 15 50475061 50475061 G A SLC27A2 Missense_Mutation p.C146Y 0.48 deleterious(0) probably_damaging(0.992) TCGA-46-3769-01 15 51973991 51973991 A G SCG3 Silent p.L13L 0.57 TCGA-46-3769-01 15 54307002 54307002 G C UNC13C Silent p.V634V 0.39 TCGA-46-3769-01 15 59910815 59910815 A G GCNT3 Silent p.K126K 0.41 TCGA-46-3769-01 15 63446168 63446168 A G RPS27L 3'UTR 0.12 TCGA-46-3769-01 15 66161914 66161914 C T RAB11A 5'UTR 0.46 TCGA-46-3769-01 15 72582474 72582474 T A CELF6 Missense_Mutation p.S173C 0.15 deleterious(0) probably_damaging(1) TCGA-46-3769-01 15 74574143 74574143 G A CCDC33 Missense_Mutation p.D350N 0.51 deleterious(0.04) benign(0.004) TCGA-46-3769-01 15 78635882 78635882 G T CRABP1 Silent p.T97T 0.29 TCGA-46-3769-01 15 79290512 79290512 G T RASGRF1 Silent p.I980I 0.25 TCGA-46-3769-01 15 79750590 79750590 A T KIAA1024 Nonsense_Mutation p.K701* 0.37 TCGA-46-3769-01 15 81578086 81578086 T A IL16 Missense_Mutation p.L416Q 0.59 deleterious(0) benign(0.058) TCGA-46-3769-01 15 81625278 81625278 C T TMC3 Missense_Mutation p.A929T 0.35 tolerated_low_confidence(0.47) benign(0.001) TCGA-46-3769-01 15 81637256 81637256 G T TMC3 Silent p.R457R 0.19 TCGA-46-3769-01 15 86697678 86697678 A C AGBL1 Missense_Mutation p.K48Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-46-3769-01 16 14989462 14989462 C T NOMO1 Missense_Mutation p.A1210V 0.27 deleterious(0.04) benign(0.007) TCGA-46-3769-01 16 17202698 17202698 C A XYLT1 Missense_Mutation p.G912W 0.42 deleterious(0) probably_damaging(0.93) TCGA-46-3769-01 16 20329729 20329729 C T GP2 Missense_Mutation p.G347E 0.16 deleterious(0.01) probably_damaging(0.98) TCGA-46-3769-01 16 21093016 21093016 G A DNAH3 Silent p.P970P 0.12 TCGA-46-3769-01 16 22260121 22260121 C G EEF2K Missense_Mutation p.I131M 0.42 tolerated(0.07) possibly_damaging(0.655) TCGA-46-3769-01 16 2373534 2373534 G T ABCA3 Silent p.G201G 0.51 TCGA-46-3769-01 16 24802560 24802560 G T TNRC6A Missense_Mutation p.W866L 0.49 tolerated(0.57) probably_damaging(0.998) TCGA-46-3769-01 16 24953356 24953356 C A ARHGAP17 Missense_Mutation p.R481L 0.61 deleterious(0) probably_damaging(0.975) TCGA-46-3769-01 16 29675658 29675658 C A SPN Silent p.P203P 0.62 TCGA-46-3769-01 16 30409369 30409369 G T ZNF48 Missense_Mutation p.Q266H 0.33 tolerated(0.05) benign(0.004) TCGA-46-3769-01 16 31435470 31435470 C T ITGAD Silent p.F1069F 0.17 TCGA-46-3769-01 16 31435806 31435806 G A ITGAD Missense_Mutation p.E1094K 0.32 tolerated(0.79) benign(0.004) TCGA-46-3769-01 16 32893913 32893913 G T RP11-989E6.3 5'Flank 0.12 TCGA-46-3769-01 16 33647500 33647500 C A RP11-812E19.9 Missense_Mutation p.G34W 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-46-3769-01 16 47117419 47117419 C A NETO2 Missense_Mutation p.A431S 0.33 tolerated_low_confidence(0.18) benign(0.09) TCGA-46-3769-01 16 5058478 5058478 G T SEC14L5 Silent p.L543L 0.70 TCGA-46-3769-01 16 56678669 56678669 T A MT1A 3'Flank 0.18 TCGA-46-3769-01 16 58559117 58559117 G C CNOT1 Missense_Mutation p.I2250M 0.30 deleterious(0) possibly_damaging(0.891) TCGA-46-3769-01 16 61687817 61687817 C A CDH8 Missense_Mutation p.D699Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-46-3769-01 16 72153940 72153940 C G PMFBP1 Silent p.L939L 0.30 TCGA-46-3769-01 16 77769814 77769814 C A NUDT7 Silent p.A93A 0.25 TCGA-46-3769-01 16 77913097 77913097 G T VAT1L Missense_Mutation p.K286N 0.23 deleterious(0) probably_damaging(0.984) TCGA-46-3769-01 16 79245630 79245630 C G WWOX Silent p.A394A 0.18 TCGA-46-3769-01 16 818700 818700 C T MSLN Silent p.V620V 0.62 TCGA-46-3769-01 16 84271026 84271026 A G KCNG4 Silent p.P22P 0.26 TCGA-46-3769-01 16 88061218 88061218 C A BANP Nonsense_Mutation p.S334* 0.29 TCGA-46-3769-01 16 88691009 88691009 G C ZC3H18 Splice_Site p.X633_splice 0.40 TCGA-46-3769-01 16 88722558 88722558 C G MVD Silent p.V186V 0.27 TCGA-46-3769-01 16 90244243 90244243 C A FAM157C RNA 0.70 TCGA-46-3769-01 17 10298521 10298521 G T MYH8 Missense_Mutation p.Q1631K 0.31 deleterious(0) possibly_damaging(0.755) TCGA-46-3769-01 17 10302972 10302972 C A MYH8 Missense_Mutation p.K1250N 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-46-3769-01 17 10356530 10356530 T A MYH4 Missense_Mutation p.E1017V 0.18 deleterious(0.02) probably_damaging(0.998) TCGA-46-3769-01 17 10398576 10398576 C T MYH1 Missense_Mutation p.G1743E 0.33 deleterious(0.04) benign(0.099) TCGA-46-3769-01 17 10404776 10404776 C G MYH1 Missense_Mutation p.R1130P 0.68 deleterious(0.01) probably_damaging(0.967) TCGA-46-3769-01 17 10432232 10432232 C A MYH2 Silent p.R1173R 0.08 TCGA-46-3769-01 17 10628381 10628381 C A TMEM220 Silent p.A78A 0.18 TCGA-46-3769-01 17 16323463 16323463 C A TRPV2 Missense_Mutation p.L79I 0.35 tolerated(0.22) possibly_damaging(0.798) TCGA-46-3769-01 17 21203906 21203906 G T MAP2K3 Missense_Mutation p.R72L 0.25 deleterious(0) probably_damaging(0.993) TCGA-46-3769-01 17 27306729 27306729 G A SEZ6 Missense_Mutation p.S276F 0.65 deleterious(0) possibly_damaging(0.602) TCGA-46-3769-01 17 27869857 27869857 C T TAOK1 Silent p.P941P 0.14 TCGA-46-3769-01 17 27959886 27959886 C A SSH2 Missense_Mutation p.V749F 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-46-3769-01 17 29684054 29684054 G T NF1 Missense_Mutation p.L2605F 0.17 deleterious(0) probably_damaging(0.986) TCGA-46-3769-01 17 3323930 3323930 A G OR3A3 Silent p.L23L 0.29 TCGA-46-3769-01 17 33738500 33738500 T A SLFN12 Nonsense_Mutation p.K532* 0.56 TCGA-46-3769-01 17 34072205 34072205 T A GAS2L2 Missense_Mutation p.I771F 0.26 deleterious(0.04) probably_damaging(0.998) TCGA-46-3769-01 17 34072206 34072206 G C GAS2L2 Silent p.S770S 0.27 TCGA-46-3769-01 17 39116541 39116541 C T KRT39 Silent p.S403S 0.21 TCGA-46-3769-01 17 39140113 39140113 C G KRT40 Missense_Mutation p.R138P 0.64 tolerated(0.13) benign(0.272) TCGA-46-3769-01 17 39261704 39261704 G C KRTAP4-9 Missense_Mutation p.E22Q 0.18 tolerated(0.09) unknown(0) TCGA-46-3769-01 17 39642717 39642717 C A KRT36 Missense_Mutation p.V439F 0.27 tolerated(0.14) benign(0.002) TCGA-46-3769-01 17 40556972 40556972 C A PTRF Silent p.T302T 0.18 TCGA-46-3769-01 17 41020842 41020842 G T AOC4P RNA 0.31 TCGA-46-3769-01 17 41244070 41244070 T A BRCA1 Nonsense_Mutation p.K1160* 0.11 TCGA-46-3769-01 17 41341074 41341074 C G NBR1 Missense_Mutation p.P140A 0.07 tolerated(0.47) benign(0.027) TCGA-46-3769-01 17 46628422 46628422 C A HOXB3 Silent p.R190R 0.21 TCGA-46-3769-01 17 46673923 46673923 C A HOXB6 Missense_Mutation p.R176L 0.64 deleterious(0) possibly_damaging(0.701) TCGA-46-3769-01 17 48245004 48245004 C A SGCA Silent p.P73P 0.18 TCGA-46-3769-01 17 51900869 51900869 C A KIF2B Missense_Mutation p.Q159K 0.29 tolerated(1) benign(0.063) TCGA-46-3769-01 17 51901186 51901186 C A KIF2B Missense_Mutation p.F264L 0.42 deleterious(0) probably_damaging(0.998) TCGA-46-3769-01 17 55693342 55693342 G C MSI2 Missense_Mutation p.K183N 0.51 deleterious(0) probably_damaging(0.999) TCGA-46-3769-01 17 56293532 56293532 G A MKS1 Silent p.L112L 0.46 TCGA-46-3769-01 17 56384158 56384158 T C BZRAP1 Intron 0.59 TCGA-46-3769-01 17 59147416 59147416 G T BCAS3 Intron 0.38 TCGA-46-3769-01 17 60814365 60814365 G T MARCH10 Missense_Mutation p.S288R 0.44 deleterious(0.02) benign(0.175) TCGA-46-3769-01 17 62049739 62049739 C A SCN4A Missense_Mutation p.R122L 0.57 deleterious(0.01) benign(0.059) TCGA-46-3769-01 17 62968992 62968992 C A AMZ2P1 RNA 0.60 TCGA-46-3769-01 17 66878019 66878019 A G ABCA8 Missense_Mutation p.F1271L 0.43 deleterious(0.03) benign(0.076) TCGA-46-3769-01 17 66982358 66982358 C A ABCA9 Silent p.V1385V 0.38 TCGA-46-3769-01 17 67029935 67029935 A T ABCA9 Missense_Mutation p.L403H 0.43 tolerated(0.22) benign(0.021) TCGA-46-3769-01 17 6946295 6946295 G T SLC16A11 Missense_Mutation p.F124L 0.46 tolerated(0.19) possibly_damaging(0.519) TCGA-46-3769-01 17 72368181 72368181 G T GPR142 Silent p.R277R 0.38 TCGA-46-3769-01 17 7339853 7339853 C G TMEM102 Missense_Mutation p.D185E 0.38 tolerated_low_confidence(0.33) benign(0.003) TCGA-46-3769-01 17 7578230 7578230 C - TP53 Frame_Shift_Del p.D207Mfs*40 0.35 TCGA-46-3769-01 17 77704931 77704931 G C ENPP7 Silent p.V10V 0.41 TCGA-46-3769-01 17 77711788 77711788 G C ENPP7 Missense_Mutation p.R440S 0.35 tolerated_low_confidence(0.37) benign(0.007) TCGA-46-3769-01 17 78323667 78323667 A G RNF213 Missense_Mutation p.Q3350R 0.44 probably_damaging(0.998) TCGA-46-3769-01 17 79686896 79686896 C G SLC25A10 Silent p.L256L 0.47 TCGA-46-3769-01 17 8243550 8243550 C A ODF4 Missense_Mutation p.R61S 0.35 deleterious(0.01) probably_damaging(0.98) TCGA-46-3769-01 17 8784233 8784233 C A PIK3R5 Missense_Mutation p.Q828H 0.52 deleterious(0) probably_damaging(0.999) TCGA-46-3769-01 18 21957471 21957471 A T OSBPL1A Silent p.L9L 0.67 TCGA-46-3769-01 18 29055842 29055842 C A DSG3 Silent p.P873P 0.11 TCGA-46-3769-01 18 29099864 29099864 G C DSG2 Missense_Mutation p.E60D 0.56 deleterious(0) probably_damaging(0.99) TCGA-46-3769-01 18 33725955 33725955 G T ELP2 Missense_Mutation p.D378Y 0.13 deleterious(0) probably_damaging(0.996) TCGA-46-3769-01 18 40503725 40503725 C G RIT2 Missense_Mutation p.E80Q 0.81 tolerated(0.19) probably_damaging(0.95) TCGA-46-3769-01 18 55247367 55247367 G A FECH Silent p.A44A 0.21 TCGA-46-3769-01 18 61226897 61226897 C G SERPINB12 Nonsense_Mutation p.Y110* 0.17 TCGA-46-3769-01 18 61305083 61305083 G C SERPINB4 Missense_Mutation p.A348G 0.38 tolerated(1) benign(0) TCGA-46-3769-01 18 61305084 61305084 C T SERPINB4 Missense_Mutation p.A348T 0.35 deleterious(0.03) benign(0) TCGA-46-3769-01 18 61306500 61306500 G T SERPINB4 Silent p.A229A 0.29 TCGA-46-3769-01 18 61459629 61459629 G T SERPINB7 Missense_Mutation p.L57F 0.24 deleterious(0) benign(0.173) TCGA-46-3769-01 18 70532107 70532107 G T NETO1 Silent p.I52I 0.20 TCGA-46-3769-01 18 72998837 72998837 G T TSHZ1 Missense_Mutation p.G447V 0.16 tolerated(0.29) benign(0.097) TCGA-46-3769-01 18 74622041 74622041 C T ZNF236 Nonsense_Mutation p.Q855* 0.17 TCGA-46-3769-01 18 74622042 74622042 A T ZNF236 Missense_Mutation p.Q855L 0.17 deleterious(0) benign(0.13) TCGA-46-3769-01 18 74631815 74631815 G T ZNF236 Nonsense_Mutation p.E1118* 0.14 TCGA-46-3769-01 18 8819111 8819111 G A SOGA2 Missense_Mutation p.E1004K 0.59 deleterious(0.01) possibly_damaging(0.69) TCGA-46-3769-01 19 10076996 10076996 A T COL5A3 Missense_Mutation p.F1592L 0.67 unknown(0) TCGA-46-3769-01 19 1043053 1043053 G T ABCA7 Missense_Mutation p.R198L 0.19 tolerated(0.09) benign(0.001) TCGA-46-3769-01 19 1056367 1056367 C G ABCA7 Silent p.A1485A 0.21 TCGA-46-3769-01 19 110837 110837 C A OR4F17 Nonsense_Mutation p.Y53* 0.11 TCGA-46-3769-01 19 11795883 11795883 C T ZNF833P RNA 0.50 TCGA-46-3769-01 19 15072908 15072908 C G SLC1A6 Missense_Mutation p.V281L 0.49 tolerated(0.25) probably_damaging(0.983) TCGA-46-3769-01 19 15133834 15133834 G A CCDC105 Missense_Mutation p.R468Q 0.30 tolerated(0.28) benign(0.018) TCGA-46-3769-01 19 15905716 15905716 C A OR10H5 Silent p.L286L 0.18 TCGA-46-3769-01 19 16024462 16024462 C A CYP4F11 3'UTR 0.58 TCGA-46-3769-01 19 17212909 17212909 C A MYO9B Missense_Mutation p.Q128K 0.17 tolerated(0.84) benign(0.002) TCGA-46-3769-01 19 17899220 17899220 G T FCHO1 3'UTR 0.50 TCGA-46-3769-01 19 17922653 17922653 G A B3GNT3 Missense_Mutation p.A281T 0.53 tolerated(0.65) benign(0.007) TCGA-46-3769-01 19 22156135 22156135 G T ZNF208 Silent p.T567T 0.50 TCGA-46-3769-01 19 31040208 31040208 G T ZNF536 Missense_Mutation p.A1228S 0.26 tolerated_low_confidence(0.6) benign(0.002) TCGA-46-3769-01 19 313641 313641 A G MIER2 Missense_Mutation p.Y220H 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-46-3769-01 19 31767965 31767965 C A TSHZ3 Missense_Mutation p.A912S 0.26 tolerated(1) benign(0.138) TCGA-46-3769-01 19 33792245 33792245 C G CEBPA Nonstop_Mutation p.*359Sext*36 0.50 TCGA-46-3769-01 19 36110360 36110360 A G HAUS5 Missense_Mutation p.K405R 0.27 deleterious(0) probably_damaging(0.999) TCGA-46-3769-01 19 39421117 39421117 G A SARS2 Missense_Mutation p.P87L 0.25 tolerated(0.18) benign(0.331) TCGA-46-3769-01 19 41083301 41083301 G T SHKBP1 Splice_Site p.X47_splice 0.24 TCGA-46-3769-01 19 41220008 41220008 G A ADCK4 Missense_Mutation p.P85S 0.29 deleterious(0) probably_damaging(0.982) TCGA-46-3769-01 19 44159726 44159726 C T PLAUR Splice_Site p.X158_splice 0.25 TCGA-46-3769-01 19 44223323 44223323 G C IRGC Missense_Mutation p.A205P 0.44 tolerated(0.13) benign(0.364) TCGA-46-3769-01 19 44537160 44537160 T C ZNF222 Missense_Mutation p.S485P 0.33 tolerated(0.19) probably_damaging(0.966) TCGA-46-3769-01 19 4902856 4902856 G T ARRDC5 Silent p.L8L 0.15 TCGA-46-3769-01 19 49468747 49468747 C T FTL 5'UTR 0.46 TCGA-46-3769-01 19 49671628 49671628 G T TRPM4 Missense_Mutation p.G187V 0.31 deleterious(0) probably_damaging(1) TCGA-46-3769-01 19 52941774 52941774 A T ZNF534 Missense_Mutation p.Y367F 0.31 deleterious(0.02) unknown(0) TCGA-46-3769-01 19 54377402 54377402 G T MYADM Missense_Mutation p.V207L 0.40 tolerated(0.16) benign(0.377) TCGA-46-3769-01 19 5456134 5456134 C T ZNRF4 Missense_Mutation p.S211L 0.19 deleterious(0) possibly_damaging(0.851) TCGA-46-3769-01 19 54782788 54782788 C T LILRB2 Silent p.Q278Q 0.23 TCGA-46-3769-01 19 54803513 54803513 G C LILRA3 Missense_Mutation p.T104S 0.16 tolerated(0.7) benign(0.004) TCGA-46-3769-01 19 54848834 54848834 G A LILRA4 Silent p.L263L 0.21 TCGA-46-3769-01 19 55086444 55086444 C T LILRA2 Missense_Mutation p.S200L 0.46 deleterious(0.04) benign(0.161) TCGA-46-3769-01 19 55087395 55087395 G T LILRA2 Missense_Mutation p.E358D 0.11 deleterious(0.04) benign(0.052) TCGA-46-3769-01 19 55669033 55669033 C A TNNI3 5'UTR 0.48 TCGA-46-3769-01 19 5622569 5622569 T A SAFB2 Missense_Mutation p.K53M 0.36 deleterious(0) probably_damaging(0.996) TCGA-46-3769-01 19 56701752 56701752 G T ZSCAN5B Missense_Mutation p.P311H 0.18 tolerated(0.33) probably_damaging(0.959) TCGA-46-3769-01 19 57285994 57285994 C G ZIM2 3'UTR 0.22 TCGA-46-3769-01 19 57327351 57327351 G T PEG3 Missense_Mutation p.A820D 0.35 deleterious(0) possibly_damaging(0.638) TCGA-46-3769-01 19 57328094 57328094 G C PEG3 Missense_Mutation p.F572L 0.15 tolerated(0.06) benign(0.001) TCGA-46-3769-01 19 57955212 57955212 G A ZNF749 Silent p.L232L 0.46 TCGA-46-3769-01 19 58118382 58118382 G A ZNF530 Missense_Mutation p.G497R 0.43 deleterious(0) probably_damaging(0.941) TCGA-46-3769-01 19 8175984 8175984 C G FBN3 Missense_Mutation p.E1390Q 0.25 deleterious(0.02) probably_damaging(0.974) TCGA-46-3769-01 19 9010658 9010658 G A MUC16 Silent p.P13001P 0.59 TCGA-46-3769-01 19 9069470 9069470 C A MUC16 Missense_Mutation p.E5992D 0.18 unknown(0) TCGA-46-3769-01 19 9083474 9083474 C G MUC16 Missense_Mutation p.E2781Q 0.51 unknown(0) TCGA-46-3769-01 1 102270177 102270177 C T OLFM3 Missense_Mutation p.D332N 0.47 deleterious(0.04) probably_damaging(0.997) TCGA-46-3769-01 1 10328302 10328302 C A KIF1B Missense_Mutation p.T234N 0.54 deleterious(0.02) probably_damaging(0.955) TCGA-46-3769-01 1 103352543 103352543 C A COL11A1 Missense_Mutation p.G1560C 0.15 unknown(0) TCGA-46-3769-01 1 103428220 103428220 C T COL11A1 Missense_Mutation p.E1005K 0.20 unknown(0) TCGA-46-3769-01 1 103453221 103453221 C A COL11A1 Missense_Mutation p.D824Y 0.21 unknown(0) TCGA-46-3769-01 1 109637160 109637160 G A TMEM167B 3'UTR 0.32 TCGA-46-3769-01 1 109803812 109803812 G T CELSR2 Silent p.T1369T 0.20 TCGA-46-3769-01 1 110293279 110293279 C T EPS8L3 Intron 0.31 TCGA-46-3769-01 1 111216168 111216168 C T KCNA3 Missense_Mutation p.D422N 0.36 deleterious(0.02) probably_damaging(0.909) TCGA-46-3769-01 1 114308797 114308797 C A RSBN1 Missense_Mutation p.R738S 0.29 tolerated_low_confidence(0.27) benign(0.001) TCGA-46-3769-01 1 114310948 114310948 G C RSBN1 Silent p.L574L 0.14 TCGA-46-3769-01 1 114970445 114970445 C T TRIM33 Silent p.V409V 0.43 TCGA-46-3769-01 1 120509091 120509091 T C NOTCH2 Missense_Mutation p.E492G 0.31 deleterious(0) probably_damaging(0.997) TCGA-46-3769-01 1 12567003 12567003 C T VPS13D Silent p.A4297A 0.14 TCGA-46-3769-01 1 12979852 12979852 C A PRAMEF7 Silent p.A348A 0.26 TCGA-46-3769-01 1 13001086 13001086 C G PRAMEF6 Silent p.L199L 0.04 TCGA-46-3769-01 1 144892439 144892439 C G PDE4DIP Intron 0.11 TCGA-46-3769-01 1 145302744 145302744 G C NBPF10 Missense_Mutation p.L394F 0.43 possibly_damaging(0.487) TCGA-46-3769-01 1 145415320 145415320 G C HFE2 Missense_Mutation p.V47L 0.08 tolerated(0.18) possibly_damaging(0.548) TCGA-46-3769-01 1 145581401 145581401 C G PIAS3 Intron 0.34 TCGA-46-3769-01 1 146398508 146398508 G A NBPF12 Splice_Site p.X165_splice 0.10 TCGA-46-3769-01 1 147084987 147084987 C G BCL9 Missense_Mutation p.S120C 0.22 deleterious(0.02) benign(0.176) TCGA-46-3769-01 1 150325483 150325483 C A PRPF3 3'UTR 0.12 TCGA-46-3769-01 1 152058373 152058373 C T TCHHL1 Silent p.Q595Q 0.28 TCGA-46-3769-01 1 152129161 152129161 C T RPTN Silent p.E138E 0.28 TCGA-46-3769-01 1 152659716 152659716 C A LCE2B 3'UTR 0.30 TCGA-46-3769-01 1 154515264 154515264 G T TDRD10 Missense_Mutation p.R157M 0.22 deleterious(0) possibly_damaging(0.817) TCGA-46-3769-01 1 155838213 155838213 A G SYT11 Silent p.S164S 0.15 TCGA-46-3769-01 1 157665335 157665335 G A FCRL3 Silent p.L399L 0.26 TCGA-46-3769-01 1 157801672 157801672 G T CD5L 3'UTR 0.26 TCGA-46-3769-01 1 158576522 158576522 T C OR10Z1 Silent p.A98A 0.25 TCGA-46-3769-01 1 158576523 158576523 G T OR10Z1 Missense_Mutation p.A99S 0.25 tolerated(0.05) benign(0.03) TCGA-46-3769-01 1 158592826 158592826 C G SPTA1 Missense_Mutation p.A2023P 0.21 tolerated(0.26) benign(0.2) TCGA-46-3769-01 1 158615329 158615329 C A SPTA1 Missense_Mutation p.A1318S 0.12 deleterious(0) possibly_damaging(0.795) TCGA-46-3769-01 1 158624460 158624460 G T SPTA1 Missense_Mutation p.P993T 0.24 deleterious(0.03) benign(0.026) TCGA-46-3769-01 1 158648259 158648259 G T SPTA1 Silent p.R248R 0.35 TCGA-46-3769-01 1 158747070 158747070 G T OR6N2 Missense_Mutation p.A119D 0.16 deleterious(0.01) benign(0.157) TCGA-46-3769-01 1 160580487 160580487 A G SLAMF1 3'UTR 0.23 TCGA-46-3769-01 1 160920953 160920953 C A ITLN2 Silent p.T107T 0.40 TCGA-46-3769-01 1 161967803 161967803 G A OLFML2B Missense_Mutation p.P429L 0.30 tolerated(0.07) benign(0.006) TCGA-46-3769-01 1 164776878 164776878 G T PBX1 Missense_Mutation p.E267D 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-46-3769-01 1 166891994 166891994 G A ILDR2 Silent p.F349F 0.25 TCGA-46-3769-01 1 16727236 16727236 G T SPATA21 Silent p.R385R 0.57 TCGA-46-3769-01 1 172520690 172520690 C T SUCO Missense_Mutation p.S34L 0.26 tolerated_low_confidence(0.09) benign(0.154) TCGA-46-3769-01 1 173503744 173503744 A C SLC9C2 Missense_Mutation p.L618W 0.35 deleterious(0) possibly_damaging(0.885) TCGA-46-3769-01 1 173881102 173881102 G C SERPINC1 Missense_Mutation p.F153L 0.32 tolerated(0.28) probably_damaging(0.92) TCGA-46-3769-01 1 175053046 175053046 C A TNN Missense_Mutation p.D403E 0.14 tolerated(0.51) benign(0.042) TCGA-46-3769-01 1 175372675 175372675 C A TNR Missense_Mutation p.G193C 0.13 deleterious(0) probably_damaging(0.997) TCGA-46-3769-01 1 175375662 175375662 C A TNR Silent p.V63V 0.18 TCGA-46-3769-01 1 17552641 17552641 T G PADI1 Missense_Mutation p.F214V 0.31 deleterious(0) probably_damaging(0.999) TCGA-46-3769-01 1 17555289 17555289 G T PADI1 Silent p.P274P 0.62 TCGA-46-3769-01 1 176760590 176760590 G T PAPPA2 Missense_Mutation p.E1664D 0.27 deleterious(0) probably_damaging(0.983) TCGA-46-3769-01 1 17690305 17690305 C A PADI4 3'UTR 0.20 TCGA-46-3769-01 1 180062650 180062650 C T CEP350 Silent p.R2470R 0.26 TCGA-46-3769-01 1 180163490 180163490 C T QSOX1 Silent p.L477L 0.30 TCGA-46-3769-01 1 181549846 181549846 C A CACNA1E Silent p.I295I 0.17 TCGA-46-3769-01 1 183907946 183907946 G A COLGALT2 Silent p.A610A 0.30 TCGA-46-3769-01 1 184764780 184764780 C A FAM129A Silent p.S706S 0.20 TCGA-46-3769-01 1 186010270 186010270 T C HMCN1 Splice_Site p.X2102_splice 0.16 TCGA-46-3769-01 1 186099657 186099657 G T HMCN1 Missense_Mutation p.G4353V 0.32 probably_damaging(0.999) TCGA-46-3769-01 1 186326588 186326588 C A TPR Silent p.V555V 0.31 TCGA-46-3769-01 1 193038214 193038214 A T TROVE2 Silent p.P10P 0.19 TCGA-46-3769-01 1 1961080 1961080 A T GABRD Missense_Mutation p.Y313F 0.12 deleterious(0) probably_damaging(0.997) TCGA-46-3769-01 1 197112698 197112698 G A ASPM Silent p.F228F 0.26 TCGA-46-3769-01 1 203798581 203798581 G T ZC3H11A Missense_Mutation p.V101L 0.17 tolerated(0.22) benign(0.005) TCGA-46-3769-01 1 204380249 204380249 T C PPP1R15B Silent p.L97L 0.31 TCGA-46-3769-01 1 211952259 211952259 C G LPGAT1 Splice_Site p.X285_splice 0.12 TCGA-46-3769-01 1 214706296 214706296 G A PTPN14 Intron 0.27 TCGA-46-3769-01 1 214805946 214805946 G T CENPF Splice_Site p.X482_splice 0.31 TCGA-46-3769-01 1 214816281 214816281 G T CENPF Nonsense_Mutation p.E1534* 0.13 TCGA-46-3769-01 1 215823956 215823956 C T USH2A Missense_Mutation p.S4774N 0.10 benign(0) TCGA-46-3769-01 1 215901539 215901539 C G USH2A Missense_Mutation p.D3967H 0.32 benign(0.014) TCGA-46-3769-01 1 215990448 215990448 G C USH2A Missense_Mutation p.A3154G 0.37 benign(0.017) TCGA-46-3769-01 1 216052200 216052200 G C USH2A Missense_Mutation p.Q2822E 0.28 benign(0.014) TCGA-46-3769-01 1 216052283 216052283 A T USH2A Missense_Mutation p.V2794D 0.16 possibly_damaging(0.875) TCGA-46-3769-01 1 216363668 216363668 T A USH2A Silent p.V1431V 0.23 TCGA-46-3769-01 1 216595351 216595351 T C USH2A Missense_Mutation p.T110A 0.19 benign(0.005) TCGA-46-3769-01 1 218458684 218458684 G T RRP15 Missense_Mutation p.R9L 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.484) TCGA-46-3769-01 1 220152881 220152881 C A EPRS Missense_Mutation p.G1263V 0.14 deleterious(0.01) benign(0.31) TCGA-46-3769-01 1 221912899 221912899 G A DUSP10 Missense_Mutation p.S63L 0.13 deleterious_low_confidence(0) benign(0.386) TCGA-46-3769-01 1 221912900 221912900 A T DUSP10 Missense_Mutation p.S63T 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.621) TCGA-46-3769-01 1 229568800 229568800 G C ACTA1 Silent p.A21A 0.14 TCGA-46-3769-01 1 231885718 231885718 C A DISC1 Silent p.I388I 0.35 TCGA-46-3769-01 1 234041325 234041325 G T SLC35F3 Missense_Mutation p.S35I 0.42 tolerated_low_confidence(0.11) probably_damaging(0.996) TCGA-46-3769-01 1 234565935 234565935 C A TARBP1 Missense_Mutation p.G836V 0.18 deleterious(0.05) possibly_damaging(0.572) TCGA-46-3769-01 1 235715326 235715326 C G GNG4 3'UTR 0.14 TCGA-46-3769-01 1 236702237 236702237 C A LGALS8 Missense_Mutation p.H65N 0.28 deleterious(0) probably_damaging(1) TCGA-46-3769-01 1 236711372 236711372 G C LGALS8 Missense_Mutation p.E331Q 0.31 deleterious(0.01) probably_damaging(0.962) TCGA-46-3769-01 1 236751300 236751300 C A HEATR1 Missense_Mutation p.R525L 0.16 deleterious(0) probably_damaging(0.994) TCGA-46-3769-01 1 236751301 236751301 G A HEATR1 Nonsense_Mutation p.R525* 0.17 TCGA-46-3769-01 1 236911049 236911049 A G ACTN2 Missense_Mutation p.T497A 0.28 tolerated(0.23) probably_damaging(0.997) TCGA-46-3769-01 1 237617764 237617764 C A RYR2 Missense_Mutation p.L456M 0.07 benign(0.241) TCGA-46-3769-01 1 237619941 237619941 C G RYR2 Missense_Mutation p.H506Q 0.36 benign(0.117) TCGA-46-3769-01 1 237632437 237632437 G T RYR2 Missense_Mutation p.G553V 0.12 possibly_damaging(0.542) TCGA-46-3769-01 1 237730076 237730076 G T RYR2 Splice_Site p.X1141_splice 0.21 TCGA-46-3769-01 1 237778138 237778138 T C RYR2 Silent p.L1904L 0.18 TCGA-46-3769-01 1 237947621 237947621 G T RYR2 Silent p.A4203A 0.07 TCGA-46-3769-01 1 237948232 237948232 G C RYR2 Missense_Mutation p.S4407T 0.16 benign(0.002) TCGA-46-3769-01 1 237982461 237982461 T G RYR2 Missense_Mutation p.F4853L 0.16 possibly_damaging(0.787) TCGA-46-3769-01 1 238050774 238050774 C A ZP4 Missense_Mutation p.R214L 0.20 deleterious(0.05) possibly_damaging(0.524) TCGA-46-3769-01 1 238090520 238090520 G C RP11-193H5.1 RNA 0.58 TCGA-46-3769-01 1 24078941 24078941 G A TCEB3 Silent p.A516A 0.59 TCGA-46-3769-01 1 241758003 241758004 - A KMO 3'UTR 0.11 TCGA-46-3769-01 1 243349566 243349566 C A CEP170 Missense_Mutation p.A423S 0.15 tolerated(0.98) benign(0.01) TCGA-46-3769-01 1 243480191 243480191 C A SDCCAG8 Missense_Mutation p.T355N 0.51 deleterious(0) probably_damaging(0.996) TCGA-46-3769-01 1 24706237 24706237 T C STPG1 Missense_Mutation p.K123R 0.45 tolerated(0.17) benign(0.42) TCGA-46-3769-01 1 247582273 247582273 C A NLRP3 Silent p.I59I 0.25 TCGA-46-3769-01 1 247588944 247588944 C T NLRP3 Intron 0.19 TCGA-46-3769-01 1 247875361 247875361 C A OR6F1 Missense_Mutation p.G233C 0.20 deleterious(0) probably_damaging(0.992) TCGA-46-3769-01 1 247920865 247920865 C G OR1C1 Missense_Mutation p.A282P 0.17 deleterious(0) benign(0.227) TCGA-46-3769-01 1 248263520 248263520 C A OR2L13 Silent p.T281T 0.15 TCGA-46-3769-01 1 248525735 248525735 G T OR2T4 Missense_Mutation p.G285W 0.57 deleterious(0) probably_damaging(1) TCGA-46-3769-01 1 248616135 248616135 T G OR2T2 Missense_Mutation p.F13V 0.09 deleterious(0) benign(0.326) TCGA-46-3769-01 1 248637586 248637586 C A OR2T3 Nonsense_Mutation p.S312* 0.10 TCGA-46-3769-01 1 248685106 248685106 C A OR2G6 Silent p.S53S 0.08 TCGA-46-3769-01 1 248685110 248685110 C G OR2G6 Missense_Mutation p.L55V 0.54 deleterious(0) probably_damaging(0.999) TCGA-46-3769-01 1 248756222 248756222 G A OR2T10 Missense_Mutation p.P283L 0.13 deleterious(0) probably_damaging(0.992) TCGA-46-3769-01 1 248756589 248756589 G T OR2T10 Missense_Mutation p.P161T 0.08 deleterious(0.04) benign(0.05) TCGA-46-3769-01 1 248790288 248790288 C T OR2T11 Missense_Mutation p.V48M 0.17 tolerated(0.35) benign(0.03) TCGA-46-3769-01 1 2529710 2529710 A T MMEL1 Missense_Mutation p.L403Q 0.09 deleterious(0.02) probably_damaging(0.997) TCGA-46-3769-01 1 28477001 28477001 C T PTAFR Missense_Mutation p.E178K 0.28 tolerated(0.05) benign(0.269) TCGA-46-3769-01 1 29070237 29070237 G T YTHDF2 Silent p.V485V 0.34 TCGA-46-3769-01 1 2938634 2938634 C G ACTRT2 Missense_Mutation p.F128L 0.38 deleterious(0) probably_damaging(1) TCGA-46-3769-01 1 33820149 33820149 C A PHC2 Missense_Mutation p.D470Y 0.16 deleterious(0.01) possibly_damaging(0.571) TCGA-46-3769-01 1 34102088 34102088 A T CSMD2 Missense_Mutation p.L1574Q 0.60 deleterious(0.01) possibly_damaging(0.905) TCGA-46-3769-01 1 34191097 34191097 C A CSMD2 Missense_Mutation p.D810Y 0.37 deleterious(0) probably_damaging(0.999) TCGA-46-3769-01 1 35365738 35365738 G C DLGAP3 Missense_Mutation p.T415R 0.17 tolerated(0.15) benign(0.022) TCGA-46-3769-01 1 35921739 35921739 G A KIAA0319L Nonsense_Mutation p.Q511* 0.60 TCGA-46-3769-01 1 37325587 37325587 C A GRIK3 Missense_Mutation p.R273L 0.50 deleterious(0.02) possibly_damaging(0.753) TCGA-46-3769-01 1 37961483 37961484 - A MEAF6 Intron 0.32 TCGA-46-3769-01 1 38397443 38397443 C A INPP5B Intron 0.67 TCGA-46-3769-01 1 39715746 39715746 C G MACF1 Missense_Mutation p.L115V 0.64 possibly_damaging(0.591) TCGA-46-3769-01 1 39876940 39876940 G C KIAA0754 Missense_Mutation p.E199Q 0.16 possibly_damaging(0.607) TCGA-46-3769-01 1 39945559 39945559 C T MACF1 Nonsense_Mutation p.R5262* 0.21 TCGA-46-3769-01 1 41474386 41474386 G T CTPS1 Missense_Mutation p.E483D 0.39 deleterious(0) possibly_damaging(0.9) TCGA-46-3769-01 1 43204186 43204186 G C CLDN19 Missense_Mutation p.S98R 0.12 deleterious(0) probably_damaging(0.992) TCGA-46-3769-01 1 43777783 43777783 C T TIE1 Silent p.L537L 0.68 TCGA-46-3769-01 1 45223802 45223802 A G KIF2C Missense_Mutation p.Y405C 0.24 deleterious(0) probably_damaging(1) TCGA-46-3769-01 1 45469374 45469374 C T HECTD3 Missense_Mutation p.C823Y 0.50 deleterious(0) probably_damaging(1) TCGA-46-3769-01 1 47283849 47283849 A G CYP4B1 Missense_Mutation p.H440R 0.59 deleterious(0) probably_damaging(0.999) TCGA-46-3769-01 1 50642799 50642799 C G ELAVL4 Missense_Mutation p.P114A 0.18 tolerated(0.53) benign(0.008) TCGA-46-3769-01 1 57216842 57216842 T A C1orf168 Missense_Mutation p.Q421L 0.15 deleterious(0) possibly_damaging(0.809) TCGA-46-3769-01 1 6170001 6170001 T C CHD5 Missense_Mutation p.Y1811C 0.15 deleterious(0.01) possibly_damaging(0.759) TCGA-46-3769-01 1 64034182 64034182 G A EFCAB7 Missense_Mutation p.E567K 0.36 deleterious(0.02) benign(0.434) TCGA-46-3769-01 1 67205146 67205146 C A SGIP1 Silent p.L720L 0.40 TCGA-46-3769-01 1 67390477 67390477 G C WDR78 Missense_Mutation p.A13G 0.44 tolerated_low_confidence(0.13) benign(0.023) TCGA-46-3769-01 1 70477575 70477575 T C LRRC7 Missense_Mutation p.V329A 0.51 tolerated(1) benign(0.036) TCGA-46-3769-01 1 72241934 72241934 T A NEGR1 Missense_Mutation p.E152D 0.46 deleterious(0.03) probably_damaging(0.911) TCGA-46-3769-01 1 74507259 74507259 T C LRRIQ3 Silent p.R452R 0.18 TCGA-46-3769-01 1 74671168 74671168 G C FPGT Missense_Mutation p.K479N 0.08 tolerated(0.11) benign(0.03) TCGA-46-3769-01 1 85486931 85486931 C A MCOLN3 Missense_Mutation p.C450F 0.41 deleterious(0.03) probably_damaging(0.997) TCGA-46-3769-01 1 86590593 86590593 C T COL24A1 Missense_Mutation p.E476K 0.53 tolerated(0.08) possibly_damaging(0.619) TCGA-46-3769-01 1 89654377 89654377 G A GBP4 Missense_Mutation p.T433I 0.32 tolerated(0.33) benign(0.014) TCGA-46-3769-01 1 897096 897096 C T KLHL17 Missense_Mutation p.T152M 0.20 deleterious(0) probably_damaging(0.999) TCGA-46-3769-01 1 94502704 94502704 T A ABCA4 Missense_Mutation p.E1270D 0.45 deleterious(0) probably_damaging(0.995) TCGA-46-3769-01 1 99771402 99771402 C T LPPR4 Silent p.L376L 0.07 TCGA-46-3769-01 20 18448234 18448234 T A POLR3F Intron 0.38 TCGA-46-3769-01 20 1961250 1961250 A T PDYN Missense_Mutation p.Y162N 0.53 tolerated(0.49) benign(0) TCGA-46-3769-01 20 20171995 20171995 C A C20orf26 Missense_Mutation p.L508M 0.39 deleterious(0) possibly_damaging(0.532) TCGA-46-3769-01 20 20621385 20621385 T A RALGAPA2 Silent p.T170T 0.37 TCGA-46-3769-01 20 25456757 25456757 T G NINL Missense_Mutation p.D1057A 0.11 tolerated(0.11) benign(0.307) TCGA-46-3769-01 20 30602789 30602789 C A CCM2L Missense_Mutation p.P38H 0.22 deleterious(0) probably_damaging(0.999) TCGA-46-3769-01 20 31436640 31436640 C T MAPRE1 3'UTR 0.19 TCGA-46-3769-01 20 31590677 31590677 G A SUN5 Silent p.S42S 0.14 TCGA-46-3769-01 20 31607502 31607502 G T BPIFB2 Missense_Mutation p.E342D 0.58 tolerated(0.13) possibly_damaging(0.565) TCGA-46-3769-01 20 31671497 31671497 C T BPIFB4 Missense_Mutation p.A165V 0.33 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-46-3769-01 20 31811649 31811649 G A BPIFA3 Missense_Mutation p.E54K 0.09 tolerated(0.14) probably_damaging(1) TCGA-46-3769-01 20 31873902 31873902 C G BPIFB1 Missense_Mutation p.T8S 0.30 tolerated(0.2) benign(0.028) TCGA-46-3769-01 20 34242934 34242934 C A RBM12 Missense_Mutation p.R104I 0.46 deleterious(0) unknown(0) TCGA-46-3769-01 20 35128704 35128704 G T DLGAP4 Silent p.P731P 0.15 TCGA-46-3769-01 20 41306547 41306547 C A PTPRT Missense_Mutation p.G371V 0.18 deleterious(0) probably_damaging(1) TCGA-46-3769-01 20 42315650 42315650 C T MYBL2 Silent p.I146I 0.28 TCGA-46-3769-01 20 44483870 44483870 G C ACOT8 Missense_Mutation p.L64V 0.16 deleterious(0.02) possibly_damaging(0.651) TCGA-46-3769-01 20 44527174 44527174 C T CTSA 3'UTR 0.57 TCGA-46-3769-01 20 45016067 45016067 C G ELMO2 Missense_Mutation p.E145D 0.44 tolerated(0.24) benign(0.097) TCGA-46-3769-01 20 47990134 47990134 C T KCNB1 Missense_Mutation p.E655K 0.22 tolerated_low_confidence(0.05) benign(0.338) TCGA-46-3769-01 20 50776752 50776752 G A ZFP64 Missense_Mutation p.H225Y 0.51 deleterious(0) probably_damaging(0.995) TCGA-46-3769-01 20 55027043 55027043 G T CASS4 Missense_Mutation p.A271S 0.47 tolerated(0.78) benign(0.025) TCGA-46-3769-01 20 56099117 56099117 C A CTCFL Missense_Mutation p.A49S 0.39 deleterious(0.04) benign(0.421) TCGA-46-3769-01 20 57242623 57242623 A G STX16 Silent p.P74P 0.23 TCGA-46-3769-01 20 60503462 60503462 G T CDH4 Missense_Mutation p.W662C 0.45 deleterious(0) probably_damaging(0.999) TCGA-46-3769-01 20 62842683 62842683 C T MYT1 Silent p.I472I 0.39 TCGA-46-3769-01 20 9401951 9401951 C G PLCB4 Nonsense_Mutation p.S709* 0.57 TCGA-46-3769-01 21 10910396 10910396 G T TPTE Missense_Mutation p.L454I 0.12 tolerated(0.12) benign(0.014) TCGA-46-3769-01 21 15554098 15554098 G C LIPI Silent p.V229V 0.13 TCGA-46-3769-01 21 27066164 27066164 C A JAM2 Missense_Mutation p.A113D 0.20 deleterious(0.01) probably_damaging(0.988) TCGA-46-3769-01 21 27141330 27141330 G T GABPA Silent p.G384G 0.20 TCGA-46-3769-01 21 27372439 27372439 G C APP Nonsense_Mutation p.Y308* 0.19 TCGA-46-3769-01 21 34924260 34924260 C T SON Missense_Mutation p.S908L 0.29 benign(0.307) TCGA-46-3769-01 21 45929138 45929140 GTA - TSPEAR In_Frame_Del p.Y566del 0.19 TCGA-46-3769-01 21 45994747 45994747 C A KRTAP10-4 Missense_Mutation p.P371H 0.19 deleterious(0) unknown(0) TCGA-46-3769-01 21 46925829 46925829 C T COL18A1 Silent p.A1235A 0.18 TCGA-46-3769-01 21 47836082 47836082 A T PCNT Missense_Mutation p.M2084L 0.22 benign(0.067) TCGA-46-3769-01 21 47918562 47918562 C A DIP2A Silent p.L157L 0.18 TCGA-46-3769-01 22 17447154 17447154 G T GAB4 Missense_Mutation p.A375E 0.50 tolerated(0.07) possibly_damaging(0.857) TCGA-46-3769-01 22 19511547 19511547 G T CLDN5 Missense_Mutation p.Q163K 0.50 deleterious(0.01) probably_damaging(0.975) TCGA-46-3769-01 22 21096603 21096603 G A PI4KA Silent p.P1218P 0.28 TCGA-46-3769-01 22 21288526 21288526 A C CRKL Silent p.A257A 0.27 TCGA-46-3769-01 22 22931056 22931056 C G IGLV2-33 Nonsense_Mutation p.S84* 0.26 TCGA-46-3769-01 22 23401853 23401853 C A RTDR1 Silent p.L278L 0.66 TCGA-46-3769-01 22 26224836 26224836 G T MYO18B Silent p.A960A 0.24 TCGA-46-3769-01 22 29707967 29707967 C T GAS2L1 3'UTR 0.33 TCGA-46-3769-01 22 30035098 30035098 C G NF2 Nonsense_Mutation p.S87* 0.68 TCGA-46-3769-01 22 36691011 36691011 C A MYH9 Missense_Mutation p.E1199D 0.67 benign(0.052) TCGA-46-3769-01 22 36692951 36692951 C A MYH9 Missense_Mutation p.Q1070H 0.25 probably_damaging(0.992) TCGA-46-3769-01 22 38130844 38130844 G A TRIOBP Missense_Mutation p.E1501K 0.56 tolerated_low_confidence(0.8) benign(0.045) TCGA-46-3769-01 22 38130997 38130997 G C TRIOBP Missense_Mutation p.E1552Q 0.53 deleterious_low_confidence(0.02) benign(0.051) TCGA-46-3769-01 22 38131246 38131246 G A TRIOBP Missense_Mutation p.E1635K 0.69 tolerated_low_confidence(0.28) benign(0.013) TCGA-46-3769-01 22 39629506 39629506 G A PDGFB Silent p.L62L 0.46 TCGA-46-3769-01 22 50750580 50750580 C T DENND6B Silent p.L582L 0.26 TCGA-46-3769-01 2 101592003 101592003 G T NPAS2 Missense_Mutation p.G456W 0.31 deleterious(0.01) probably_damaging(0.942) TCGA-46-3769-01 2 108618456 108618456 C T SLC5A7 Missense_Mutation p.S234L 0.30 tolerated(0.42) benign(0.002) TCGA-46-3769-01 2 108626752 108626752 C A SLC5A7 Missense_Mutation p.T393K 0.31 deleterious(0) possibly_damaging(0.831) TCGA-46-3769-01 2 110049062 110049062 G C SH3RF3 Missense_Mutation p.K503N 0.32 deleterious(0) probably_damaging(0.969) TCGA-46-3769-01 2 124999952 124999952 A T CNTNAP5 Missense_Mutation p.K121N 0.36 deleterious(0.01) benign(0.02) TCGA-46-3769-01 2 125281886 125281886 A C CNTNAP5 Missense_Mutation p.N444T 0.48 deleterious(0.03) benign(0.099) TCGA-46-3769-01 2 125530503 125530503 C A CNTNAP5 Silent p.T886T 0.47 TCGA-46-3769-01 2 125669111 125669111 C T CNTNAP5 Silent p.I1240I 0.42 TCGA-46-3769-01 2 12881013 12881013 A T TRIB2 3'UTR 0.38 TCGA-46-3769-01 2 131487661 131487661 C T GPR148 Missense_Mutation p.R313C 0.60 tolerated(0.07) possibly_damaging(0.886) TCGA-46-3769-01 2 132276853 132276853 C G AC093838.4 RNA 0.67 TCGA-46-3769-01 2 135625270 135625270 G C ACMSD Intron 0.51 TCGA-46-3769-01 2 142004852 142004852 T A LRP1B Missense_Mutation p.S179C 0.51 benign(0.195) TCGA-46-3769-01 2 149539297 149539297 A T EPC2 Missense_Mutation p.Q602L 0.06 tolerated(0.2) benign(0.026) TCGA-46-3769-01 2 152374923 152374923 T C NEB Missense_Mutation p.K7570R 0.06 probably_damaging(0.999) TCGA-46-3769-01 2 160076237 160076237 G A TANC1 Silent p.L1179L 0.61 TCGA-46-3769-01 2 168101798 168101798 C T XIRP2 Missense_Mutation p.T1299I 0.19 benign(0.106) TCGA-46-3769-01 2 168106535 168106535 A G XIRP2 Missense_Mutation p.E2878G 0.07 benign(0.019) TCGA-46-3769-01 2 169814626 169814626 G T ABCB11 Missense_Mutation p.P731T 0.46 tolerated(0.21) benign(0.002) TCGA-46-3769-01 2 170062925 170062925 G A LRP2 Silent p.F2435F 0.12 TCGA-46-3769-01 2 170062926 170062926 A T LRP2 Missense_Mutation p.F2435Y 0.12 benign(0.033) TCGA-46-3769-01 2 171709293 171709293 C A GAD1 Silent p.V418V 0.34 TCGA-46-3769-01 2 172712451 172712451 G C SLC25A12 Missense_Mutation p.S73C 0.19 deleterious(0.02) benign(0.111) TCGA-46-3769-01 2 176982280 176982280 C A HOXD10 Missense_Mutation p.P240H 0.18 deleterious(0.01) possibly_damaging(0.873) TCGA-46-3769-01 2 177034272 177034272 A T HOXD3 Nonsense_Mutation p.K144* 0.30 TCGA-46-3769-01 2 177202252 177202252 C T MTX2 Missense_Mutation p.H218Y 0.28 deleterious(0) probably_damaging(0.967) TCGA-46-3769-01 2 178482257 178482257 C A TTC30A Silent p.R391R 0.40 TCGA-46-3769-01 2 179412919 179412919 A T TTN Missense_Mutation p.I31145N 0.24 TCGA-46-3769-01 2 179443892 179443892 G T TTN Missense_Mutation p.T22622K 0.31 TCGA-46-3769-01 2 179452854 179452854 C A TTN Missense_Mutation p.A21094S 0.34 TCGA-46-3769-01 2 179455492 179455492 G T TTN Silent p.V20320V 0.22 TCGA-46-3769-01 2 179460333 179460333 G A TTN Nonsense_Mutation p.Q19250* 0.44 TCGA-46-3769-01 2 179475959 179475959 A T TTN Missense_Mutation p.V16966D 0.28 TCGA-46-3769-01 2 179534373 179534373 C T TTN Missense_Mutation p.E11806K 0.29 TCGA-46-3769-01 2 179575619 179575619 C A TTN Missense_Mutation p.R9402L 0.30 TCGA-46-3769-01 2 179610930 179610930 G C TTN Intron 0.47 TCGA-46-3769-01 2 18113462 18113462 T A KCNS3 Nonsense_Mutation p.L396* 0.12 TCGA-46-3769-01 2 185803014 185803014 C A ZNF804A Nonsense_Mutation p.S964* 0.24 TCGA-46-3769-01 2 18765908 18765908 G A NT5C1B Silent p.L259L 0.31 TCGA-46-3769-01 2 190331241 190331241 C G WDR75 Silent p.T460T 0.26 TCGA-46-3769-01 2 190924989 190924989 G A MSTN Silent p.D182D 0.14 TCGA-46-3769-01 2 1926494 1926494 C T MYT1L Silent p.R349R 0.19 TCGA-46-3769-01 2 1927027 1927027 G A MYT1L Nonsense_Mutation p.Q172* 0.25 TCGA-46-3769-01 2 202899355 202899355 G T FZD7 5'UTR 0.41 TCGA-46-3769-01 2 209190082 209190082 G C PIKFYVE Silent p.L849L 0.55 TCGA-46-3769-01 2 21234330 21234330 T C APOB Missense_Mutation p.N1804D 0.13 benign(0.003) TCGA-46-3769-01 2 219602602 219602602 G T TTLL4 Missense_Mutation p.G68V 0.53 tolerated(0.31) benign(0.157) TCGA-46-3769-01 2 220506520 220506520 C T SLC4A3 3'UTR 0.56 TCGA-46-3769-01 2 222290645 222290645 A C EPHA4 3'UTR 0.11 TCGA-46-3769-01 2 232577903 232577903 C A PTMA 3'UTR 0.48 TCGA-46-3769-01 2 233527618 233527618 G T EFHD1 Nonsense_Mutation p.E137* 0.40 TCGA-46-3769-01 2 233986827 233986827 G T INPP5D Missense_Mutation p.G70V 0.46 deleterious(0) probably_damaging(1) TCGA-46-3769-01 2 234591121 234591121 G T UGT1A7 Missense_Mutation p.G180C 0.52 deleterious(0) possibly_damaging(0.588) TCGA-46-3769-01 2 240016748 240016748 C T HDAC4 Silent p.S741S 0.54 TCGA-46-3769-01 2 241658612 241658612 C A KIF1A Silent p.P1675P 0.44 TCGA-46-3769-01 2 242192394 242192394 G C HDLBP Silent p.L450L 0.46 TCGA-46-3769-01 2 25061456 25061456 A T ADCY3 Missense_Mutation p.L464Q 0.15 deleterious(0) probably_damaging(0.983) TCGA-46-3769-01 2 26424190 26424190 C G HADHA Splice_Site p.X407_splice 0.20 TCGA-46-3769-01 2 27167686 27167686 C A DPYSL5 Missense_Mutation p.L535I 0.24 tolerated(0.2) benign(0.223) TCGA-46-3769-01 2 27293106 27293106 C A AGBL5 Missense_Mutation p.P879Q 0.10 deleterious_low_confidence(0) benign(0.347) TCGA-46-3769-01 2 27552333 27552333 G C GTF3C2 Missense_Mutation p.S597C 0.17 deleterious(0) possibly_damaging(0.497) TCGA-46-3769-01 2 27684180 27684180 C G IFT172 Missense_Mutation p.E800Q 0.28 tolerated(0.38) benign(0.015) TCGA-46-3769-01 2 30998812 30998812 C G CAPN13 Missense_Mutation p.G124A 0.14 deleterious(0) probably_damaging(0.998) TCGA-46-3769-01 2 33500942 33500942 G T LTBP1 Nonsense_Mutation p.E982* 0.12 TCGA-46-3769-01 2 37002155 37002155 G A VIT Silent p.R249R 0.10 TCGA-46-3769-01 2 37374958 37374958 C G EIF2AK2 5'UTR 0.18 TCGA-46-3769-01 2 39089399 39089399 C A DHX57 Nonsense_Mutation p.E154* 0.13 TCGA-46-3769-01 2 42996925 42996925 C G HAAO Missense_Mutation p.W186C 0.12 deleterious(0) probably_damaging(0.996) TCGA-46-3769-01 2 45832512 45832512 T A SRBD1 Silent p.S23S 0.15 TCGA-46-3769-01 2 49190184 49190184 G T FSHR Silent p.A592A 0.20 TCGA-46-3769-01 2 50699459 50699459 C A NRXN1 Missense_Mutation p.G1114V 0.20 deleterious(0) probably_damaging(0.998) TCGA-46-3769-01 2 54080608 54080608 G A GPR75 Missense_Mutation p.S429F 0.42 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-46-3769-01 2 61002258 61002258 C T PAPOLG Nonsense_Mutation p.R232* 0.21 TCGA-46-3769-01 2 63176204 63176204 G A EHBP1 Silent p.K776K 0.22 TCGA-46-3769-01 2 69002150 69002150 G T ARHGAP25 Intron 0.44 TCGA-46-3769-01 2 69046400 69046400 G T ARHGAP25 Missense_Mutation p.W383C 0.13 deleterious(0) probably_damaging(1) TCGA-46-3769-01 2 69409643 69409643 G T ANTXR1 Missense_Mutation p.G402C 0.38 deleterious(0) probably_damaging(1) TCGA-46-3769-01 2 70187820 70187820 G C ASPRV1 Nonsense_Mutation p.S334* 0.14 TCGA-46-3769-01 2 71351516 71351516 C A MCEE Missense_Mutation p.K66N 0.12 deleterious(0) possibly_damaging(0.495) TCGA-46-3769-01 2 71838380 71838380 G T DYSF Missense_Mutation p.E1321D 0.21 tolerated(1) benign(0) TCGA-46-3769-01 2 73476157 73476157 C G CCT7 Silent p.L274L 0.34 TCGA-46-3769-01 2 77745792 77745792 T A LRRTM4 Silent p.T401T 0.44 TCGA-46-3769-01 2 79347993 79347993 T A REG1A Silent p.A2A 0.24 TCGA-46-3769-01 2 89161397 89161397 C A IGKC 5'Flank 0.52 TCGA-46-3769-01 2 89544459 89544459 G T IGKV2-30 Missense_Mutation p.N55K 0.10 tolerated(0.47) benign(0.005) TCGA-46-3769-01 2 90060797 90060797 T A IGKV6D-21 Silent p.I48I 0.26 TCGA-46-3769-01 2 90121911 90121911 C A IGKV1D-17 Silent p.I43I 0.26 TCGA-46-3769-01 2 90249214 90249214 G A IGKV1D-43 Nonsense_Mutation p.W57* 0.11 TCGA-46-3769-01 2 95488794 95488794 C A ANKRD20A8P RNA 0.12 TCGA-46-3769-01 2 96458251 96458251 C T AC008268.2 RNA 0.23 TCGA-46-3769-01 2 98351741 98351741 C A ZAP70 Missense_Mutation p.L371M 0.10 deleterious(0) probably_damaging(1) TCGA-46-3769-01 2 99012653 99012653 C T CNGA3 Silent p.I340I 0.19 TCGA-46-3769-01 2 99812039 99812039 C G MRPL30 Missense_Mutation p.I119M 0.36 deleterious(0.01) benign(0.215) TCGA-46-3769-01 3 100287758 100287758 G T TMEM45A Missense_Mutation p.W227C 0.34 deleterious(0.02) benign(0.17) TCGA-46-3769-01 3 101283908 101283908 A T TRMT10C Nonsense_Mutation p.R95* 0.25 TCGA-46-3769-01 3 105252517 105252517 T A ALCAM Missense_Mutation p.L177Q 0.24 deleterious(0) probably_damaging(0.938) TCGA-46-3769-01 3 108474549 108474549 G C RETNLB 3'UTR 0.26 TCGA-46-3769-01 3 10861482 10861482 C A SLC6A11 Missense_Mutation p.S159R 0.23 deleterious(0.01) possibly_damaging(0.567) TCGA-46-3769-01 3 113329854 113329854 G C SIDT1 Splice_Site p.X574_splice 0.33 TCGA-46-3769-01 3 11383696 11383696 C G ATG7 Silent p.V356V 0.38 TCGA-46-3769-01 3 115571360 115571360 C T LSAMP Missense_Mutation p.D207N 0.12 deleterious(0.04) probably_damaging(0.997) TCGA-46-3769-01 3 120977893 120977893 G T STXBP5L Silent p.V612V 0.35 TCGA-46-3769-01 3 121100298 121100298 G T STXBP5L Nonsense_Mutation p.G860* 0.22 TCGA-46-3769-01 3 121230774 121230774 C G POLQ Missense_Mutation p.G524A 0.16 deleterious(0) probably_damaging(0.999) TCGA-46-3769-01 3 121340752 121340752 C A FBXO40 Missense_Mutation p.T159N 0.22 tolerated(0.49) benign(0.004) TCGA-46-3769-01 3 121445853 121445853 T C GOLGB1 Missense_Mutation p.I146M 0.27 benign(0.009) TCGA-46-3769-01 3 123687973 123687973 C G ROPN1 3'UTR 0.31 TCGA-46-3769-01 3 124114075 124114075 C A KALRN Missense_Mutation p.Q684K 0.36 tolerated(1) unknown(0) TCGA-46-3769-01 3 124431863 124431863 G A KALRN Missense_Mutation p.M1022I 0.09 deleterious(0.01) benign(0.074) TCGA-46-3769-01 3 126268734 126268734 C A C3orf22 Missense_Mutation p.G135W 0.28 deleterious(0.01) probably_damaging(0.991) TCGA-46-3769-01 3 126749203 126749203 G C PLXNA1 Missense_Mutation p.D1727H 0.27 deleterious(0.05) probably_damaging(0.977) TCGA-46-3769-01 3 128204866 128204866 G A GATA2 Missense_Mutation p.S192F 0.15 deleterious(0) probably_damaging(0.974) TCGA-46-3769-01 3 130188024 130188024 G A COL6A5 Nonsense_Mutation p.W2392* 0.12 TCGA-46-3769-01 3 132203456 132203456 G T DNAJC13 Silent p.R1069R 0.10 TCGA-46-3769-01 3 133098820 133098820 G C TMEM108 Missense_Mutation p.E89Q 0.15 deleterious_low_confidence(0.05) benign(0.154) TCGA-46-3769-01 3 133099218 133099218 G T TMEM108 Missense_Mutation p.K221N 0.23 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-46-3769-01 3 133526599 133526599 G T SRPRB Missense_Mutation p.G87C 0.30 deleterious(0) probably_damaging(0.995) TCGA-46-3769-01 3 134269059 134269059 G C CEP63 Missense_Mutation p.R446T 0.27 deleterious(0) benign(0.127) TCGA-46-3769-01 3 138738743 138738743 G A PRR23B Missense_Mutation p.P254L 0.41 deleterious(0.05) probably_damaging(0.999) TCGA-46-3769-01 3 140140019 140140019 G C CLSTN2 Missense_Mutation p.E230D 0.15 tolerated(0.25) benign(0.016) TCGA-46-3769-01 3 141526697 141526697 G C GRK7 Missense_Mutation p.E421Q 0.20 tolerated(0.12) possibly_damaging(0.864) TCGA-46-3769-01 3 141595613 141595613 C T ATP1B3 5'UTR 0.24 TCGA-46-3769-01 3 142455268 142455268 G C TRPC1 Missense_Mutation p.D74H 0.27 tolerated(0.26) possibly_damaging(0.562) TCGA-46-3769-01 3 151171201 151171201 C T IGSF10 Nonsense_Mutation p.W229* 0.19 TCGA-46-3769-01 3 154147144 154147144 G T GPR149 Silent p.I87I 0.13 TCGA-46-3769-01 3 158317862 158317862 T A MLF1 Silent p.I187I 0.26 TCGA-46-3769-01 3 16254180 16254180 G A GALNT15 Silent p.L434L 0.64 TCGA-46-3769-01 3 164712057 164712057 G T SI Missense_Mutation p.P1610H 0.14 deleterious(0) probably_damaging(1) TCGA-46-3769-01 3 167000265 167000265 G - ZBBX Frame_Shift_Del p.P672Lfs*57 0.22 TCGA-46-3769-01 3 169485440 169485440 G C ACTRT3 Nonsense_Mutation p.S300* 0.18 TCGA-46-3769-01 3 176769497 176769497 A G TBL1XR1 Silent p.D74D 0.13 TCGA-46-3769-01 3 179131506 179131506 G A GNB4 Missense_Mutation p.T165I 0.16 deleterious(0) probably_damaging(0.997) TCGA-46-3769-01 3 180377513 180377513 C G CCDC39 Missense_Mutation p.Q187H 0.19 deleterious(0) benign(0.111) TCGA-46-3769-01 3 180685922 180685922 G A FXR1 Missense_Mutation p.D428N 0.11 tolerated(0.05) possibly_damaging(0.87) TCGA-46-3769-01 3 183907720 183907720 G A ABCF3 Splice_Site p.X464_splice 0.26 TCGA-46-3769-01 3 184040983 184040983 G A EIF4G1 Missense_Mutation p.R688H 0.16 deleterious(0.04) probably_damaging(0.925) TCGA-46-3769-01 3 184042714 184042714 A G EIF4G1 Missense_Mutation p.I897V 0.16 deleterious(0.02) benign(0.012) TCGA-46-3769-01 3 184294689 184294689 G A EPHB3 Missense_Mutation p.E358K 0.14 deleterious(0.01) possibly_damaging(0.721) TCGA-46-3769-01 3 186940980 186940980 C T MASP1 Missense_Mutation p.A582T 0.34 tolerated(1) benign(0.001) TCGA-46-3769-01 3 187386958 187386958 C T SST Missense_Mutation p.M82I 0.28 tolerated(0.15) benign(0.001) TCGA-46-3769-01 3 194062502 194062502 G T CPN2 Silent p.A310A 0.23 TCGA-46-3769-01 3 194081183 194081183 C A LRRC15 Missense_Mutation p.G203V 0.23 tolerated(0.06) benign(0.187) TCGA-46-3769-01 3 194373677 194373677 C A LSG1 Missense_Mutation p.W318C 0.25 deleterious(0.04) possibly_damaging(0.865) TCGA-46-3769-01 3 197239159 197239159 G T BDH1 Missense_Mutation p.F213L 0.40 deleterious(0.03) possibly_damaging(0.872) TCGA-46-3769-01 3 197707242 197707242 G T LMLN Missense_Mutation p.G199C 0.27 deleterious(0) probably_damaging(0.978) TCGA-46-3769-01 3 27244048 27244048 G A NEK10 Silent p.C697C 0.53 TCGA-46-3769-01 3 3139615 3139615 G T IL5RA Missense_Mutation p.N216K 0.23 deleterious(0.01) possibly_damaging(0.597) TCGA-46-3769-01 3 32495815 32495815 C G CMTM7 3'UTR 0.21 TCGA-46-3769-01 3 36422172 36422172 G T STAC Missense_Mutation p.D13Y 0.55 tolerated_low_confidence(0.07) possibly_damaging(0.526) TCGA-46-3769-01 3 38770299 38770299 T C SCN10A Missense_Mutation p.I792V 0.16 tolerated(0.07) benign(0.019) TCGA-46-3769-01 3 38781048 38781048 C A SCN10A Silent p.V746V 0.65 TCGA-46-3769-01 3 38968411 38968411 G A SCN11A Missense_Mutation p.T167I 0.33 deleterious(0.01) benign(0.134) TCGA-46-3769-01 3 39307072 39307072 T A CX3CR1 Missense_Mutation p.K342I 0.20 deleterious(0) probably_damaging(0.998) TCGA-46-3769-01 3 40571728 40571728 G A ZNF621 Silent p.L60L 0.42 TCGA-46-3769-01 3 46541960 46541960 C A RTP3 Silent p.T90T 0.17 TCGA-46-3769-01 3 46945048 46945048 G A PTH1R Missense_Mutation p.G562R 0.27 tolerated(0.12) possibly_damaging(0.494) TCGA-46-3769-01 3 48473987 48473987 G T CCDC51 Missense_Mutation p.A356D 0.17 tolerated(0.11) benign(0.019) TCGA-46-3769-01 3 49692795 49692795 C A BSN Missense_Mutation p.Q1936K 0.36 unknown(0) TCGA-46-3769-01 3 64547256 64547256 C T ADAMTS9 Missense_Mutation p.E1566K 0.34 tolerated(0.41) benign(0.024) TCGA-46-3769-01 3 66502051 66502051 G C LRIG1 Silent p.L99L 0.32 TCGA-46-3769-01 3 9782562 9782562 G T BRPF1 Silent p.G553G 0.35 TCGA-46-3769-01 3 97983218 97983218 C T OR5H6 Silent p.L30L 0.24 TCGA-46-3769-01 3 97983944 97983944 C A OR5H6 Silent p.T272T 0.25 TCGA-46-3769-01 4 100515905 100515905 G C MTTP Silent p.L258L 0.44 TCGA-46-3769-01 4 113348773 113348773 G C ALPK1 Missense_Mutation p.M249I 0.29 deleterious(0) probably_damaging(0.968) TCGA-46-3769-01 4 113568585 113568585 G T LARP7 Missense_Mutation p.G300W 0.14 deleterious(0.01) probably_damaging(0.992) TCGA-46-3769-01 4 114282011 114282011 A T ANK2 Missense_Mutation p.R3572W 0.62 probably_damaging(0.998) TCGA-46-3769-01 4 115891700 115891700 C A NDST4 Silent p.R369R 0.29 TCGA-46-3769-01 4 1207352 1207352 C A CTBP1 Missense_Mutation p.C312F 0.37 deleterious(0) probably_damaging(0.964) TCGA-46-3769-01 4 123207785 123207785 C A KIAA1109 Missense_Mutation p.P3043T 0.28 probably_damaging(0.998) TCGA-46-3769-01 4 123333783 123333783 C G ADAD1 Silent p.L356L 0.62 TCGA-46-3769-01 4 125599908 125599908 T C ANKRD50 Missense_Mutation p.H222R 0.37 tolerated(0.25) benign(0.058) TCGA-46-3769-01 4 126412468 126412468 G C FAT4 Missense_Mutation p.D4831H 0.17 probably_damaging(0.999) TCGA-46-3769-01 4 13602546 13602546 T A BOD1L1 Missense_Mutation p.K1993I 0.11 benign(0.29) TCGA-46-3769-01 4 144390295 144390295 G T GAB1 Missense_Mutation p.G710W 0.44 deleterious(0.04) probably_damaging(0.999) TCGA-46-3769-01 4 155254549 155254549 G T DCHS2 Silent p.P438P 0.41 TCGA-46-3769-01 4 155459240 155459240 G C PLRG1 Missense_Mutation p.S391C 0.15 deleterious(0) probably_damaging(1) TCGA-46-3769-01 4 167020663 167020663 G C TLL1 Missense_Mutation p.R964P 0.51 deleterious(0) probably_damaging(0.996) TCGA-46-3769-01 4 169337864 169337864 C G DDX60L Missense_Mutation p.A899P 0.33 deleterious(0) probably_damaging(0.999) TCGA-46-3769-01 4 173150831 173150831 G T GALNTL6 Missense_Mutation p.G55W 0.42 deleterious(0.01) possibly_damaging(0.447) TCGA-46-3769-01 4 178897011 178897011 G T LINC01098 Nonsense_Mutation p.G72* 0.09 TCGA-46-3769-01 4 184431872 184431872 G C ING2 Missense_Mutation p.E204Q 0.58 deleterious(0.01) possibly_damaging(0.71) TCGA-46-3769-01 4 187549470 187549470 C T FAT1 Missense_Mutation p.V1550I 0.44 benign(0.074) TCGA-46-3769-01 4 188924664 188924664 C A ZFP42 Missense_Mutation p.H235N 0.10 deleterious(0) probably_damaging(1) TCGA-46-3769-01 4 27000893 27000893 G A STIM2 Silent p.L183L 0.45 TCGA-46-3769-01 4 36296596 36296596 T A DTHD1 Silent p.S401S 0.16 TCGA-46-3769-01 4 4199533 4199533 C A OTOP1 Missense_Mutation p.S343I 0.31 deleterious(0.02) probably_damaging(0.99) TCGA-46-3769-01 4 44713028 44713028 G C GNPDA2 Nonsense_Mutation p.S179* 0.15 TCGA-46-3769-01 4 46305529 46305529 G T GABRA2 Silent p.S268S 0.39 TCGA-46-3769-01 4 46390739 46390739 C G GABRA2 Intron 0.32 TCGA-46-3769-01 4 46995466 46995466 C A GABRA4 5'UTR 0.38 TCGA-46-3769-01 4 47033570 47033570 G A GABRB1 5'UTR 0.19 TCGA-46-3769-01 4 47939827 47939827 C G CNGA1 Silent p.L297L 0.19 TCGA-46-3769-01 4 48115301 48115301 T A TXK Missense_Mutation p.S33C 0.14 deleterious(0.01) possibly_damaging(0.838) TCGA-46-3769-01 4 54440231 54440231 C A LNX1 5'UTR 0.26 TCGA-46-3769-01 4 54930367 54930367 C A CHIC2 Missense_Mutation p.G34V 0.45 deleterious(0) probably_damaging(0.992) TCGA-46-3769-01 4 55156543 55156543 G T PDGFRA Missense_Mutation p.V982L 0.09 tolerated(0.94) benign(0.049) TCGA-46-3769-01 4 55592146 55592146 A T KIT Missense_Mutation p.E490D 0.79 tolerated(0.06) benign(0.041) TCGA-46-3769-01 4 55599352 55599352 A C KIT Missense_Mutation p.K826N 0.06 deleterious(0) probably_damaging(0.999) TCGA-46-3769-01 4 57798239 57798239 G A REST Missense_Mutation p.G1072E 0.62 tolerated(1) benign(0) TCGA-46-3769-01 4 6862821 6862821 G C KIAA0232 Missense_Mutation p.E238Q 0.24 tolerated(0.34) benign(0.006) TCGA-46-3769-01 4 70066419 70066419 C A UGT2B11 Missense_Mutation p.M443I 0.41 deleterious(0.03) benign(0.008) TCGA-46-3769-01 4 70146511 70146511 C T UGT2B28 Missense_Mutation p.S98L 0.18 tolerated(0.62) benign(0.002) TCGA-46-3769-01 4 7044215 7044215 C T CCDC96 Missense_Mutation p.E151K 0.21 tolerated_low_confidence(0.21) benign(0.044) TCGA-46-3769-01 4 73434420 73434420 A T ADAMTS3 Silent p.A20A 0.51 TCGA-46-3769-01 4 74275097 74275097 C T ALB Missense_Mutation p.H170Y 0.15 deleterious(0.02) benign(0.08) TCGA-46-3769-01 4 76570810 76570810 C G G3BP2 Missense_Mutation p.R418T 0.56 deleterious(0.01) probably_damaging(0.972) TCGA-46-3769-01 4 77230773 77230773 G T FAM47E-STBD1 Missense_Mutation p.D233Y 0.49 deleterious(0) probably_damaging(0.958) TCGA-46-3769-01 4 79353585 79353585 G C FRAS1 Missense_Mutation p.D1682H 0.65 probably_damaging(0.992) TCGA-46-3769-01 4 8609035 8609035 C A CPZ Silent p.T370T 0.33 TCGA-46-3769-01 4 88766732 88766732 G T MEPE Missense_Mutation p.G238C 0.35 deleterious(0) probably_damaging(1) TCGA-46-3769-01 4 88989210 88989210 A C PKD2 Missense_Mutation p.Q840P 0.41 deleterious(0.05) possibly_damaging(0.756) TCGA-46-3769-01 4 98893523 98893523 G A STPG2 Nonsense_Mutation p.Q281* 0.57 TCGA-46-3769-01 5 102363902 102363902 A T PAM Missense_Mutation p.K902N 0.50 deleterious(0) probably_damaging(0.99) TCGA-46-3769-01 5 118728655 118728655 G T TNFAIP8 Missense_Mutation p.R59M 0.64 deleterious(0) benign(0.386) TCGA-46-3769-01 5 127681162 127681162 G T FBN2 Missense_Mutation p.T1035N 0.50 tolerated(0.44) benign(0.216) TCGA-46-3769-01 5 134023936 134023945 GTCTTCAGGA - SEC24A Frame_Shift_Del p.G557Efs*9 0.42 TCGA-46-3769-01 5 138661001 138661001 G T MATR3 Intron 0.33 TCGA-46-3769-01 5 140215673 140215673 C T PCDHA7 Missense_Mutation p.R569W 0.47 tolerated_low_confidence(0.16) benign(0.004) TCGA-46-3769-01 5 140552867 140552867 G T PCDHB7 Missense_Mutation p.A151S 0.56 tolerated_low_confidence(0.18) benign(0.003) TCGA-46-3769-01 5 140731747 140731747 C A PCDHGB1 Silent p.V640V 0.44 TCGA-46-3769-01 5 141236853 141236853 C G PCDH1 Missense_Mutation p.D1095H 0.57 deleterious(0) probably_damaging(0.999) TCGA-46-3769-01 5 141324905 141324905 C T PCDH12 3'UTR 0.58 TCGA-46-3769-01 5 148627474 148627474 G C ABLIM3 Missense_Mutation p.E561Q 0.55 tolerated(0.13) benign(0.075) TCGA-46-3769-01 5 161116112 161116112 A G GABRA6 Missense_Mutation p.N128S 0.53 tolerated(0.42) probably_damaging(0.996) TCGA-46-3769-01 5 161324409 161324409 C T GABRA1 Missense_Mutation p.A451V 0.39 deleterious_low_confidence(0) benign(0.019) TCGA-46-3769-01 5 16689976 16689976 C A MYO10 Missense_Mutation p.D1285Y 0.30 deleterious(0) probably_damaging(1) TCGA-46-3769-01 5 167626043 167626049 CAATCAT - TENM2 Frame_Shift_Del p.I1030Sfs*36 0.42 TCGA-46-3769-01 5 167643784 167643784 G A TENM2 Missense_Mutation p.D1364N 0.09 tolerated(0.11) benign(0.188) TCGA-46-3769-01 5 168216618 168216618 C T SLIT3 Silent p.Q342Q 0.33 TCGA-46-3769-01 5 169116285 169116285 G T DOCK2 Missense_Mutation p.R264L 0.54 tolerated(0.19) benign(0.008) TCGA-46-3769-01 5 169506093 169506093 G C DOCK2 Missense_Mutation p.K1703N 0.33 tolerated_low_confidence(0.23) possibly_damaging(0.883) TCGA-46-3769-01 5 180419834 180419834 C A BTNL3 Missense_Mutation p.P24Q 0.43 deleterious(0.01) probably_damaging(0.998) TCGA-46-3769-01 5 180622557 180622557 G T TRIM7 Missense_Mutation p.T382N 0.30 deleterious(0.02) probably_damaging(1) TCGA-46-3769-01 5 21975227 21975227 C A CDH12 Missense_Mutation p.A167S 0.27 deleterious(0) probably_damaging(0.998) TCGA-46-3769-01 5 35867468 35867468 C T IL7R Silent p.I94I 0.32 TCGA-46-3769-01 5 37000524 37000524 A G NIPBL Silent p.E1118E 0.78 TCGA-46-3769-01 5 41057273 41057273 C T MROH2B Missense_Mutation p.R286K 0.64 tolerated(0.75) benign(0.003) TCGA-46-3769-01 5 41934478 41934478 G C FBXO4 Intron 0.58 TCGA-46-3769-01 5 45303823 45303823 C A HCN1 Missense_Mutation p.G499V 0.37 deleterious(0) possibly_damaging(0.849) TCGA-46-3769-01 5 45303824 45303824 C G HCN1 Missense_Mutation p.G499R 0.36 deleterious(0.02) possibly_damaging(0.804) TCGA-46-3769-01 5 45462083 45462083 G A HCN1 Silent p.A292A 0.27 TCGA-46-3769-01 5 5182170 5182170 G T ADAMTS16 Missense_Mutation p.R172L 0.33 deleterious(0) probably_damaging(0.995) TCGA-46-3769-01 5 52780903 52780903 G T FST Silent p.R266R 0.38 TCGA-46-3769-01 5 5489491 5489491 A C KIAA0947 3'UTR 0.64 TCGA-46-3769-01 5 60188319 60188319 C G ERCC8 Intron 0.50 TCGA-46-3769-01 5 6651984 6651984 G C SRD5A1 Missense_Mutation p.G108A 0.30 deleterious(0.02) possibly_damaging(0.601) TCGA-46-3769-01 5 6668313 6668313 A T SRD5A1 Splice_Site p.X238_splice 0.30 TCGA-46-3769-01 5 70837292 70837292 A T BDP1 Missense_Mutation p.I2012L 0.20 deleterious(0.01) benign(0.053) TCGA-46-3769-01 5 71493547 71493547 A T MAP1B Missense_Mutation p.Q1455H 0.37 possibly_damaging(0.825) TCGA-46-3769-01 5 71756484 71756484 C T ZNF366 Silent p.P280P 0.17 TCGA-46-3769-01 5 7709423 7709423 T A ADCY2 Missense_Mutation p.W501R 0.33 deleterious(0) probably_damaging(0.973) TCGA-46-3769-01 5 7826896 7826896 T A ADCY2 Missense_Mutation p.I1063N 0.26 deleterious(0) probably_damaging(1) TCGA-46-3769-01 5 7869243 7869243 G T MTRR 5'UTR 0.60 TCGA-46-3769-01 5 79026607 79026607 A C CMYA5 Silent p.T673T 0.16 TCGA-46-3769-01 5 89924618 89924618 G A GPR98 Missense_Mutation p.R493Q 0.52 benign(0) TCGA-46-3769-01 5 94050558 94050558 A G MCTP1 Missense_Mutation p.Y882H 0.19 tolerated(0.48) probably_damaging(1) TCGA-46-3769-01 5 9629796 9629796 A T TAS2R1 Missense_Mutation p.W117R 0.33 deleterious(0.02) probably_damaging(0.974) TCGA-46-3769-01 6 100838631 100838631 C G SIM1 Missense_Mutation p.R636T 0.28 deleterious_low_confidence(0.01) benign(0.237) TCGA-46-3769-01 6 10419691 10419691 C A TFAP2A 5'Flank 0.26 TCGA-46-3769-01 6 105526586 105526586 C A LIN28B Silent p.S227S 0.16 TCGA-46-3769-01 6 106989163 106989163 C G AIM1 Intron 0.25 TCGA-46-3769-01 6 10725208 10725208 G A TMEM14C Nonsense_Mutation p.W12* 0.37 TCGA-46-3769-01 6 109802814 109802816 GTT - ZBTB24 In_Frame_Del p.T139del 0.35 TCGA-46-3769-01 6 112451158 112451158 C G LAMA4 Missense_Mutation p.K1351N 0.15 tolerated(0.15) benign(0.03) TCGA-46-3769-01 6 116948888 116948888 G A RSPH4A Missense_Mutation p.A340T 0.30 deleterious(0) probably_damaging(1) TCGA-46-3769-01 6 12161767 12161767 G A HIVEP1 Missense_Mutation p.E2195K 0.44 deleterious(0) possibly_damaging(0.703) TCGA-46-3769-01 6 123892185 123892185 C A TRDN Missense_Mutation p.D39Y 0.31 deleterious_low_confidence(0) unknown(0) TCGA-46-3769-01 6 129674308 129674308 G T LAMA2 Splice_Site p.X1508_splice 0.26 TCGA-46-3769-01 6 132938838 132938838 C A TAAR2 Silent p.S169S 0.20 TCGA-46-3769-01 6 134350675 134350675 G T SLC2A12 Silent p.T96T 0.42 TCGA-46-3769-01 6 136888770 136888770 T A MAP3K5 Nonsense_Mutation p.R1254* 0.41 TCGA-46-3769-01 6 138198379 138198379 C T TNFAIP3 Silent p.L324L 0.31 TCGA-46-3769-01 6 144820427 144820427 C A UTRN Nonsense_Mutation p.S1543* 0.23 TCGA-46-3769-01 6 149912013 149912013 G A GINM1 3'UTR 0.53 TCGA-46-3769-01 6 150240487 150240487 C G RAET1G Intron 0.35 TCGA-46-3769-01 6 151107545 151107545 G T PLEKHG1 Nonsense_Mutation p.E178* 0.36 TCGA-46-3769-01 6 159687195 159687195 G T FNDC1 Missense_Mutation p.K1788N 0.27 deleterious(0) probably_damaging(0.999) TCGA-46-3769-01 6 160868836 160868836 A - SLC22A3 Frame_Shift_Del p.E533Kfs*39 0.20 TCGA-46-3769-01 6 161087345 161087345 C G LPA 5'UTR 0.31 TCGA-46-3769-01 6 163483209 163483209 C A PACRG Missense_Mutation p.H107N 0.27 deleterious(0.03) probably_damaging(0.992) TCGA-46-3769-01 6 167585692 167585692 G T TCP10L2 Silent p.P20P 0.43 TCGA-46-3769-01 6 167753790 167753790 A G TTLL2 Silent p.E134E 0.31 TCGA-46-3769-01 6 169625265 169625265 G - THBS2 Frame_Shift_Del p.F916Lfs*85 0.24 TCGA-46-3769-01 6 169646362 169646362 G A THBS2 Silent p.N208N 0.16 TCGA-46-3769-01 6 169649011 169649011 C T THBS2 Missense_Mutation p.R37H 0.18 tolerated(0.05) probably_damaging(0.932) TCGA-46-3769-01 6 17637456 17637456 C A NUP153 Nonsense_Mutation p.E798* 0.42 TCGA-46-3769-01 6 21201499 21201499 G A CDKAL1 Silent p.L514L 0.42 TCGA-46-3769-01 6 25554286 25554286 G A LRRC16A Missense_Mutation p.E852K 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-46-3769-01 6 26197084 26197084 C A HIST1H3D Missense_Mutation p.R132L 0.23 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-46-3769-01 6 26234618 26234618 G A HIST1H1D Nonsense_Mutation p.Q182* 0.42 TCGA-46-3769-01 6 26393166 26393166 C T BTN2A2 Missense_Mutation p.H515Y 0.53 tolerated(0.24) benign(0.02) TCGA-46-3769-01 6 26444514 26444514 G T BTN3A3 Missense_Mutation p.V139L 0.15 tolerated(0.17) benign(0.209) TCGA-46-3769-01 6 26445991 26445991 G T BTN3A3 Nonsense_Mutation p.E165* 0.09 TCGA-46-3769-01 6 27834802 27834802 T A HIST1H1B Missense_Mutation p.K169M 0.59 deleterious(0) unknown(0) TCGA-46-3769-01 6 27841265 27841265 C G HIST1H4L Silent p.G8G 0.13 TCGA-46-3769-01 6 28053318 28053318 G A ZNF165 Silent p.L20L 0.25 TCGA-46-3769-01 6 28971816 28971816 G A ZNF311 5'UTR 0.11 TCGA-46-3769-01 6 29054912 29054912 G C OR2B3 Silent p.T38T 0.19 TCGA-46-3769-01 6 29323495 29323495 T C OR5V1 Missense_Mutation p.T160A 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-46-3769-01 6 29395013 29395013 G T OR11A1 Missense_Mutation p.L136M 0.78 deleterious(0.03) possibly_damaging(0.642) TCGA-46-3769-01 6 29524035 29524035 C G UBD Missense_Mutation p.K40N 0.48 deleterious(0) probably_damaging(0.961) TCGA-46-3769-01 6 29577154 29577154 C A GABBR1 Missense_Mutation p.G571W 0.66 deleterious(0) possibly_damaging(0.711) TCGA-46-3769-01 6 29627135 29627135 C T MOG Missense_Mutation p.A43V 0.24 tolerated(0.11) benign(0.122) TCGA-46-3769-01 6 33246501 33246501 G C B3GALT4 3'UTR 0.58 TCGA-46-3769-01 6 33284035 33284035 G T ZBTB22 Missense_Mutation p.S220Y 0.13 tolerated(0.19) benign(0.11) TCGA-46-3769-01 6 33641418 33641418 C G ITPR3 Silent p.V993V 0.53 TCGA-46-3769-01 6 35911651 35911651 C G SLC26A8 3'UTR 0.12 TCGA-46-3769-01 6 43403589 43403589 G A ABCC10 Missense_Mutation p.R570Q 0.16 deleterious(0) probably_damaging(0.961) TCGA-46-3769-01 6 43480033 43480033 C A YIPF3 Missense_Mutation p.G309C 0.52 deleterious(0) possibly_damaging(0.8) TCGA-46-3769-01 6 47846520 47846520 C G PTCHD4 Missense_Mutation p.W687S 0.09 deleterious(0) probably_damaging(0.992) TCGA-46-3769-01 6 47847511 47847511 G T PTCHD4 Missense_Mutation p.P357T 0.39 tolerated(0.07) probably_damaging(0.997) TCGA-46-3769-01 6 49986761 49986761 G A DEFB110 Nonsense_Mutation p.Q45* 0.38 TCGA-46-3769-01 6 50682871 50682871 G T TFAP2D Missense_Mutation p.G28C 0.10 deleterious(0) probably_damaging(0.979) TCGA-46-3769-01 6 51799118 51799118 C T PKHD1 Missense_Mutation p.G1971S 0.07 deleterious(0) probably_damaging(1) TCGA-46-3769-01 6 53135398 53135398 T A ELOVL5 Missense_Mutation p.Y277F 0.08 deleterious(0.03) probably_damaging(0.999) TCGA-46-3769-01 6 53160466 53160466 T C ELOVL5 Missense_Mutation p.Y11C 0.12 deleterious(0) probably_damaging(0.959) TCGA-46-3769-01 6 55196525 55196525 G T GFRAL Missense_Mutation p.S12I 0.43 tolerated(0.39) benign(0.009) TCGA-46-3769-01 6 55264069 55264069 C T GFRAL Silent p.F348F 0.45 TCGA-46-3769-01 6 55623910 55623910 A G BMP5 Missense_Mutation p.W370R 0.08 deleterious(0) probably_damaging(0.999) TCGA-46-3769-01 6 56484526 56484526 G A DST Intron 0.12 TCGA-46-3769-01 6 56879309 56879309 G A BEND6 Intron 0.50 TCGA-46-3769-01 6 56918885 56918885 A G KIAA1586 Missense_Mutation p.I530V 0.30 tolerated(0.5) benign(0.011) TCGA-46-3769-01 6 6182372 6182372 G T F13A1 Silent p.V436V 0.35 TCGA-46-3769-01 6 70778345 70778345 C A COL19A1 Missense_Mutation p.P401T 0.42 tolerated(0.05) unknown(0) TCGA-46-3769-01 6 7232080 7232080 C T RREB1 Missense_Mutation p.H1250Y 0.40 tolerated(0.84) benign(0.012) TCGA-46-3769-01 6 75857502 75857502 C T COL12A1 Missense_Mutation p.E1436K 0.45 benign(0.058) TCGA-46-3769-01 6 85448296 85448296 C T TBX18 Missense_Mutation p.A340T 0.27 deleterious(0) probably_damaging(0.984) TCGA-46-3769-01 6 88144698 88144698 C A C6ORF165 Missense_Mutation p.A474D 0.21 deleterious(0) probably_damaging(0.995) TCGA-46-3769-01 6 90472117 90472117 T C MDN1 Silent p.K759K 0.28 TCGA-46-3769-01 6 90482321 90482321 G C MDN1 Missense_Mutation p.S685C 0.32 probably_damaging(0.998) TCGA-46-3769-01 6 90482391 90482391 G A MDN1 Nonsense_Mutation p.Q662* 0.31 TCGA-46-3769-01 6 90605460 90605460 C T GJA10 Missense_Mutation p.P425S 0.19 tolerated(0.32) benign(0.01) TCGA-46-3769-01 6 93964367 93964367 C G EPHA7 Missense_Mutation p.D844H 0.36 deleterious(0) probably_damaging(0.999) TCGA-46-3769-01 6 97345750 97345750 C G NDUFAF4 5'UTR 0.34 TCGA-46-3769-01 6 97489367 97489367 G T KLHL32 Splice_Site p.X69_splice 0.23 TCGA-46-3769-01 7 100210858 100210858 G C MOSPD3 Missense_Mutation p.E83Q 0.40 deleterious(0.02) benign(0.205) TCGA-46-3769-01 7 103808925 103808925 C T ORC5 Silent p.L291L 0.59 TCGA-46-3769-01 7 106509912 106509912 T C PIK3CG Missense_Mutation p.S636P 0.12 tolerated(0.27) benign(0.062) TCGA-46-3769-01 7 106524666 106524666 G T PIK3CG Nonsense_Mutation p.G943* 0.31 TCGA-46-3769-01 7 106524667 106524667 G T PIK3CG Missense_Mutation p.G943V 0.30 deleterious(0) probably_damaging(1) TCGA-46-3769-01 7 11022091 11022091 G T PHF14 Nonsense_Mutation p.E69* 0.48 TCGA-46-3769-01 7 11078410 11078410 A G PHF14 Silent p.L668L 0.22 TCGA-46-3769-01 7 121726155 121726155 C A AASS Missense_Mutation p.G699C 0.39 deleterious(0.01) possibly_damaging(0.787) TCGA-46-3769-01 7 122111611 122111611 C A CADPS2 Missense_Mutation p.W668C 0.45 deleterious(0.04) probably_damaging(0.993) TCGA-46-3769-01 7 122339059 122339059 C T RNF133 5'UTR 0.60 TCGA-46-3769-01 7 123594272 123594272 G T SPAM1 Missense_Mutation p.W216C 0.34 deleterious(0) probably_damaging(1) TCGA-46-3769-01 7 127970947 127970947 C A RBM28 Missense_Mutation p.G352W 0.12 deleterious(0.01) probably_damaging(1) TCGA-46-3769-01 7 128038584 128038584 G A IMPDH1 Silent p.L320L 0.49 TCGA-46-3769-01 7 128041089 128041089 C A IMPDH1 Missense_Mutation p.D162Y 0.51 deleterious(0.04) possibly_damaging(0.615) TCGA-46-3769-01 7 131872353 131872353 G A PLXNA4 Missense_Mutation p.S957L 0.57 tolerated(0.78) benign(0.002) TCGA-46-3769-01 7 135048770 135048770 C A CNOT4 Missense_Mutation p.G559V 0.08 deleterious(0) probably_damaging(0.998) TCGA-46-3769-01 7 141429329 141429329 A C WEE2 Splice_Site p.X512_splice 0.16 TCGA-46-3769-01 7 142008651 142008651 T A TRBV3-1 Missense_Mutation p.C42S 0.42 deleterious(0) probably_damaging(1) TCGA-46-3769-01 7 142223974 142223974 G T TRBV11-1 Missense_Mutation p.L65M 0.26 tolerated(0.12) probably_damaging(0.941) TCGA-46-3769-01 7 142495159 142495159 G T TRBJ2-7 Missense_Mutation p.G8W 0.28 unknown(0) TCGA-46-3769-01 7 142750136 142750136 G T OR6V1 Missense_Mutation p.Q233H 0.61 tolerated(0.06) benign(0.143) TCGA-46-3769-01 7 143175872 143175872 G T TAS2R41 Missense_Mutation p.G303C 0.62 deleterious(0.01) possibly_damaging(0.879) TCGA-46-3769-01 7 150417175 150417175 G A GIMAP1 Missense_Mutation p.R28Q 0.46 deleterious(0) benign(0.324) TCGA-46-3769-01 7 150921165 150921165 C T ABCF2 Missense_Mutation p.E135K 0.60 deleterious(0) probably_damaging(0.986) TCGA-46-3769-01 7 154564582 154564582 C T DPP6 Silent p.L356L 0.38 TCGA-46-3769-01 7 154564583 154564583 T A DPP6 Missense_Mutation p.L356Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-46-3769-01 7 155598997 155598997 C T SHH Silent p.V185V 0.18 TCGA-46-3769-01 7 157396693 157396693 C T PTPRN2 Splice_Site p.X806_splice 0.26 TCGA-46-3769-01 7 17930043 17930043 G C SNX13 Missense_Mutation p.S128C 0.29 deleterious(0.01) possibly_damaging(0.753) TCGA-46-3769-01 7 18066588 18066588 T A PRPS1L1 Missense_Mutation p.N273I 0.20 deleterious(0) probably_damaging(1) TCGA-46-3769-01 7 18705919 18705919 G C HDAC9 Silent p.A517A 0.21 TCGA-46-3769-01 7 20784959 20784959 G A ABCB5 Silent p.E1109E 0.18 TCGA-46-3769-01 7 21468913 21468913 C T SP4 Nonsense_Mutation p.Q44* 0.39 TCGA-46-3769-01 7 21639594 21639594 C T DNAH11 Missense_Mutation p.P953S 0.11 benign(0.053) TCGA-46-3769-01 7 22533344 22533344 C A STEAP1B Nonsense_Mutation p.E66* 0.13 TCGA-46-3769-01 7 2284214 2284214 G C NUDT1 Missense_Mutation p.G25A 0.11 tolerated(0.53) benign(0.002) TCGA-46-3769-01 7 23561452 23561452 C T TRA2A Missense_Mutation p.R15H 0.43 deleterious_low_confidence(0) possibly_damaging(0.522) TCGA-46-3769-01 7 27148264 27148264 G C HOXA3 Missense_Mutation p.A201G 0.15 deleterious(0) possibly_damaging(0.808) TCGA-46-3769-01 7 27209158 27209158 G A RP1-170O19.20 Intron 0.26 TCGA-46-3769-01 7 31864492 31864492 C A PDE1C Missense_Mutation p.Q525H 0.23 tolerated(0.58) benign(0.001) TCGA-46-3769-01 7 34097706 34097706 C A BMPER Silent p.I321I 0.22 TCGA-46-3769-01 7 34182965 34182965 T C BMPER Silent p.N623N 0.21 TCGA-46-3769-01 7 38516551 38516551 T A AMPH Missense_Mutation p.S139C 0.24 deleterious(0.01) probably_damaging(1) TCGA-46-3769-01 7 39243867 39243867 G T POU6F2 Missense_Mutation p.G75V 0.27 tolerated_low_confidence(0.15) probably_damaging(0.914) TCGA-46-3769-01 7 3991404 3991404 G T SDK1 Silent p.V334V 0.16 TCGA-46-3769-01 7 42004165 42004165 T A GLI3 Silent p.V1502V 0.21 TCGA-46-3769-01 7 42063099 42063099 T A GLI3 Missense_Mutation p.R489W 0.15 deleterious(0) probably_damaging(0.998) TCGA-46-3769-01 7 4218193 4218193 C A SDK1 Silent p.P1691P 0.13 TCGA-46-3769-01 7 42950098 42950098 C A C7orf25 Missense_Mutation p.R192S 0.33 deleterious(0.02) possibly_damaging(0.652) TCGA-46-3769-01 7 42976962 42976962 G T MRPL32 Missense_Mutation p.Q118H 0.19 deleterious(0.03) benign(0.146) TCGA-46-3769-01 7 48314472 48314472 A G ABCA13 Missense_Mutation p.K1737E 0.22 benign(0.09) TCGA-46-3769-01 7 55233016 55233016 C T EGFR Missense_Mutation p.P589L 0.08 tolerated(0.13) possibly_damaging(0.503) TCGA-46-3769-01 7 6027050 6027050 T C PMS2 Missense_Mutation p.Q449R 0.27 tolerated(0.24) possibly_damaging(0.461) TCGA-46-3769-01 7 6048643 6048643 C T PMS2 Missense_Mutation p.R3Q 0.28 tolerated_low_confidence(0.32) benign(0.005) TCGA-46-3769-01 7 70800691 70800691 C G WBSCR17 Missense_Mutation p.R132G 0.45 deleterious(0) probably_damaging(0.972) TCGA-46-3769-01 7 79846649 79846649 A G GNAI1 Missense_Mutation p.Y302C 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-46-3769-01 7 8167699 8167699 C G ICA1 Missense_Mutation p.E378D 0.20 tolerated(0.55) benign(0.074) TCGA-46-3769-01 7 82784244 82784244 T A PCLO Silent p.T571T 0.55 TCGA-46-3769-01 7 82784705 82784705 G A PCLO Missense_Mutation p.P418S 0.08 possibly_damaging(0.803) TCGA-46-3769-01 7 87104757 87104757 C G ABCB4 Missense_Mutation p.G9R 0.14 deleterious_low_confidence(0.04) benign(0.002) TCGA-46-3769-01 7 94917904 94917904 G T PPP1R9A Missense_Mutation p.Q1262H 0.51 tolerated(0.75) benign(0.001) TCGA-46-3769-01 7 98501038 98501038 G - TRRAP Frame_Shift_Del p.G312Efs*21 0.15 TCGA-46-3769-01 7 99129345 99129345 G T ZKSCAN5 Nonsense_Mutation p.E665* 0.48 TCGA-46-3769-01 8 100133616 100133616 G C VPS13B Missense_Mutation p.L383F 0.13 tolerated(0.22) possibly_damaging(0.86) TCGA-46-3769-01 8 110523031 110523031 T A PKHD1L1 Silent p.A3807A 0.56 TCGA-46-3769-01 8 113317125 113317125 G A CSMD3 Silent p.I2697I 0.62 TCGA-46-3769-01 8 113599332 113599332 G C CSMD3 Missense_Mutation p.A1283G 0.48 deleterious(0.05) probably_damaging(0.983) TCGA-46-3769-01 8 113657387 113657387 A T CSMD3 Nonsense_Mutation p.Y1087* 0.09 TCGA-46-3769-01 8 117954955 117954955 A G AARD 3'UTR 0.18 TCGA-46-3769-01 8 122641427 122641427 A T HAS2 Missense_Mutation p.F52I 0.44 tolerated(0.98) benign(0) TCGA-46-3769-01 8 125058105 125058105 C A FER1L6 Missense_Mutation p.P896H 0.13 deleterious(0) probably_damaging(1) TCGA-46-3769-01 8 133740110 133740110 T A TMEM71 Missense_Mutation p.S185C 0.33 tolerated(0.07) possibly_damaging(0.455) TCGA-46-3769-01 8 133900481 133900481 G C TG Missense_Mutation p.R810T 0.25 deleterious(0.03) benign(0.011) TCGA-46-3769-01 8 133905937 133905937 C A TG Missense_Mutation p.P922T 0.13 deleterious(0) benign(0.305) TCGA-46-3769-01 8 134125847 134125847 G T TG Missense_Mutation p.R2585L 0.26 deleterious(0) probably_damaging(0.991) TCGA-46-3769-01 8 13947844 13947844 G T SGCZ 3'UTR 0.51 TCGA-46-3769-01 8 139696707 139696707 G C COL22A1 Silent p.L991L 0.42 TCGA-46-3769-01 8 143570401 143570401 G A BAI1 Missense_Mutation p.D820N 0.43 deleterious(0) possibly_damaging(0.831) TCGA-46-3769-01 8 144358654 144358654 G A GLI4 Missense_Mutation p.E271K 0.29 deleterious(0) probably_damaging(0.982) TCGA-46-3769-01 8 144892670 144892670 C G SCRIB Silent p.G503G 0.11 TCGA-46-3769-01 8 22421834 22421834 G C SORBS3 Silent p.T238T 0.44 TCGA-46-3769-01 8 28384825 28384825 G T FZD3 Missense_Mutation p.R183L 0.42 tolerated(0.08) benign(0.334) TCGA-46-3769-01 8 28385267 28385267 G A FZD3 Silent p.L330L 0.51 TCGA-46-3769-01 8 56436703 56436703 G C XKR4 Missense_Mutation p.E624Q 0.66 tolerated(0.34) benign(0.34) TCGA-46-3769-01 8 56699597 56699597 A C TGS1 Silent p.T380T 0.52 TCGA-46-3769-01 8 59409573 59409573 C A CYP7A1 Missense_Mutation p.W166C 0.51 deleterious(0) probably_damaging(1) TCGA-46-3769-01 8 67726104 67726104 A G SGK3 Silent p.R90R 0.42 TCGA-46-3769-01 8 68113906 68113906 G A ARFGEF1 Intron 0.16 TCGA-46-3769-01 8 68423882 68423882 A G CPA6 Missense_Mutation p.I109T 0.57 deleterious(0) possibly_damaging(0.639) TCGA-46-3769-01 8 6914138 6914138 C A DEFA5 Nonsense_Mutation p.E28* 0.48 TCGA-46-3769-01 8 70501234 70501234 G A SULF1 Missense_Mutation p.E198K 0.47 deleterious(0) benign(0.212) TCGA-46-3769-01 8 70541837 70541837 G A SULF1 Missense_Mutation p.G736E 0.49 tolerated(0.13) benign(0.067) TCGA-46-3769-01 8 72754691 72754691 C A MSC 3'UTR 0.44 TCGA-46-3769-01 8 77616923 77616923 C G ZFHX4 Silent p.S200S 0.11 TCGA-46-3769-01 8 77766955 77766955 G A ZFHX4 Missense_Mutation p.E2600K 0.33 possibly_damaging(0.848) TCGA-46-3769-01 8 87060998 87060998 T A PSKH2 Splice_Site p.X285_splice 0.36 TCGA-46-3769-01 8 91072419 91072419 G C CALB1 Silent p.L256L 0.33 TCGA-46-3769-01 8 94730980 94730980 G A FAM92A1 Silent p.Q207Q 0.29 TCGA-46-3769-01 8 95538842 95538842 C G KIAA1429 Missense_Mutation p.V544L 0.08 tolerated(0.09) probably_damaging(0.994) TCGA-46-3769-01 8 95848775 95848775 A T INTS8 Silent p.A259A 0.41 TCGA-46-3769-01 8 96167094 96167094 G C PLEKHF2 3'UTR 0.41 TCGA-46-3769-01 8 99440426 99440426 C A KCNS2 Silent p.R73R 0.26 TCGA-46-3769-01 9 104356946 104356946 G A PPP3R2 Silent p.G89G 0.19 TCGA-46-3769-01 9 105767520 105767520 G T CYLC2 Missense_Mutation p.A203S 0.27 tolerated(0.21) unknown(0) TCGA-46-3769-01 9 107457200 107457200 C A OR13D1 Silent p.I166I 0.21 TCGA-46-3769-01 9 107576733 107576733 C G ABCA1 Missense_Mutation p.E1254D 0.15 tolerated(1) benign(0.001) TCGA-46-3769-01 9 111625099 111625099 C T ACTL7A Missense_Mutation p.A166V 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-46-3769-01 9 130279211 130279211 C A FAM129B Missense_Mutation p.A300S 0.20 tolerated(0.59) benign(0.053) TCGA-46-3769-01 9 130279214 130279214 G C FAM129B Missense_Mutation p.P299A 0.20 tolerated(0.08) benign(0.174) TCGA-46-3769-01 9 130473730 130473730 G A C9orf117 Silent p.E270E 0.61 TCGA-46-3769-01 9 132623876 132623876 A C USP20 Missense_Mutation p.Q161P 0.51 deleterious(0) probably_damaging(1) TCGA-46-3769-01 9 134049561 134049561 G C NUP214 Missense_Mutation p.D1005H 0.19 possibly_damaging(0.777) TCGA-46-3769-01 9 136216887 136216887 G C RPL7A Missense_Mutation p.R132T 0.55 deleterious(0.03) benign(0.405) TCGA-46-3769-01 9 139288772 139288772 C T SNAPC4 Nonsense_Mutation p.W187* 0.39 TCGA-46-3769-01 9 140137842 140137843 GC T TUBB4B Frame_Shift_Del p.R391Lfs*25 0.20 TCGA-46-3769-01 9 140139971 140139971 G A FAM166A Missense_Mutation p.L104F 0.56 tolerated(1) benign(0.002) TCGA-46-3769-01 9 140146505 140146505 C G C9orf173 Silent p.T107T 0.47 TCGA-46-3769-01 9 140777379 140777379 C A CACNA1B Intron 0.14 TCGA-46-3769-01 9 14842506 14842506 G A FREM1 Missense_Mutation p.P516S 0.41 deleterious(0) probably_damaging(0.998) TCGA-46-3769-01 9 18928832 18928832 G C FAM154A Missense_Mutation p.P215A 0.44 tolerated(0.05) probably_damaging(0.997) TCGA-46-3769-01 9 34996700 34996700 G A DNAJB5 Missense_Mutation p.R331H 0.26 deleterious(0.02) probably_damaging(0.919) TCGA-46-3769-01 9 35108045 35108045 G A FAM214B Missense_Mutation p.P76L 0.14 deleterious_low_confidence(0.03) benign(0.028) TCGA-46-3769-01 9 4663258 4663258 C G PPAPDC2 Missense_Mutation p.R295G 0.38 deleterious_low_confidence(0.01) benign(0) TCGA-46-3769-01 9 77455096 77455096 C T TRPM6 Missense_Mutation p.E130K 0.54 deleterious(0) probably_damaging(0.994) TCGA-46-3769-01 9 78686749 78686749 G T PCSK5 Missense_Mutation p.D277Y 0.17 deleterious(0) probably_damaging(1) TCGA-46-3769-01 9 78808270 78808270 C A PCSK5 Intron 0.47 TCGA-46-3769-01 9 79322998 79322998 C A PRUNE2 Nonsense_Mutation p.E1398* 0.41 TCGA-46-3769-01 9 84530388 84530388 C A SPATA31D5P RNA 0.58 TCGA-46-3769-01 9 84532831 84532831 A C SPATA31D5P RNA 0.38 TCGA-46-3769-01 9 84533166 84533166 C A SPATA31D5P RNA 0.48 TCGA-46-3769-01 9 84607342 84607342 C G SPATA31D1 Missense_Mutation p.P653A 0.32 tolerated(0.2) benign(0.412) TCGA-46-3769-01 9 88203362 88203362 C A AGTPBP1 Silent p.R878R 0.38 TCGA-46-3769-01 9 95219630 95219630 A G ASPN Silent p.P361P 0.25 TCGA-46-3769-01 9 95847045 95847045 G A SUSD3 3'UTR 0.24 TCGA-46-3769-01 9 96212824 96212824 G A FAM120AOS Silent p.P207P 0.21 TCGA-46-3769-01 9 99228025 99228025 T C HABP4 Silent p.C236C 0.17 TCGA-46-3769-01 X 104440226 104440226 T A IL1RAPL2 Missense_Mutation p.V51E 0.64 deleterious(0) probably_damaging(0.981) TCGA-46-3769-01 X 106840841 106840841 G C FRMPD3 Missense_Mutation p.D611H 0.65 deleterious_low_confidence(0.04) benign(0.121) TCGA-46-3769-01 X 108636213 108636213 A G GUCY2F Silent p.S832S 0.70 TCGA-46-3769-01 X 1314965 1314965 A T CRLF2 Missense_Mutation p.F232L 0.28 deleterious(0.01) possibly_damaging(0.73) TCGA-46-3769-01 X 132887889 132887889 G A GPC3 Nonsense_Mutation p.Q218* 0.72 TCGA-46-3769-01 X 134156096 134156096 C T FAM127C 3'UTR 0.75 TCGA-46-3769-01 X 134166698 134166698 G T FAM127A Silent p.R95R 0.08 TCGA-46-3769-01 X 140983082 140983082 G T MAGEC3 Missense_Mutation p.D313Y 0.72 tolerated(0.43) possibly_damaging(0.861) TCGA-46-3769-01 X 140995433 140995433 C T MAGEC1 Missense_Mutation p.S748F 0.20 tolerated_low_confidence(0.13) possibly_damaging(0.485) TCGA-46-3769-01 X 142795489 142795489 T C SPANXN2 Missense_Mutation p.I63M 0.67 tolerated(0.09) possibly_damaging(0.674) TCGA-46-3769-01 X 146360837 146360837 G C MIR514A1 RNA 0.67 TCGA-46-3769-01 X 150349889 150349889 C T GPR50 Missense_Mutation p.P612S 0.60 tolerated_low_confidence(1) benign(0) TCGA-46-3769-01 X 150842410 150842410 G A PASD1 Missense_Mutation p.E643K 0.73 tolerated(0.11) possibly_damaging(0.486) TCGA-46-3769-01 X 150908073 150908073 C A CNGA2 Missense_Mutation p.N81K 0.85 tolerated(0.37) benign(0.021) TCGA-46-3769-01 X 151821602 151821602 C A GABRQ Missense_Mutation p.P586H 0.78 deleterious(0) probably_damaging(0.976) TCGA-46-3769-01 X 152225749 152225749 G T PNMA3 Nonsense_Mutation p.E113* 0.65 TCGA-46-3769-01 X 153581667 153581667 C T FLNA Missense_Mutation p.V2007M 0.61 tolerated(0.08) possibly_damaging(0.788) TCGA-46-3769-01 X 18259479 18259479 C A SCML2 Silent p.L665L 0.52 TCGA-46-3769-01 X 19024151 19024151 C G GPR64 Missense_Mutation p.C603S 0.28 deleterious(0) probably_damaging(1) TCGA-46-3769-01 X 29938136 29938136 G A IL1RAPL1 Missense_Mutation p.D328N 0.64 deleterious(0.01) probably_damaging(0.997) TCGA-46-3769-01 X 30236723 30236723 T A MAGEB2 Missense_Mutation p.L9H 0.75 tolerated(0.06) possibly_damaging(0.688) TCGA-46-3769-01 X 3241309 3241309 T G MXRA5 Missense_Mutation p.K806T 0.65 tolerated(0.58) benign(0.005) TCGA-46-3769-01 X 36117869 36117869 C G CHDC2 Missense_Mutation p.S242C 0.62 deleterious(0.03) benign(0.023) TCGA-46-3769-01 X 37028283 37028283 G T FAM47C Missense_Mutation p.E600D 0.60 tolerated(0.18) benign(0.193) TCGA-46-3769-01 X 41437649 41437649 C T CASK Missense_Mutation p.E483K 0.57 deleterious(0.02) benign(0.373) TCGA-46-3769-01 X 47307673 47307673 T G ZNF41 Missense_Mutation p.E499A 0.78 deleterious(0) probably_damaging(0.996) TCGA-46-3769-01 X 52673644 52673644 G T SSX7 3'UTR 0.57 TCGA-46-3769-01 X 53661239 53661239 T A HUWE1 Silent p.G172G 0.48 TCGA-46-3769-01 X 54823400 54823400 G C ITIH6 Missense_Mutation p.L78V 0.52 tolerated(0.61) benign(0.159) TCGA-46-3769-01 X 591648 591648 G C SHOX Missense_Mutation p.A6P 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-46-3769-01 X 64141826 64141826 C A ZC4H2 Missense_Mutation p.K32N 0.64 tolerated(0.53) possibly_damaging(0.583) TCGA-46-3769-01 X 68059886 68059886 G T EFNB1 Missense_Mutation p.A195S 0.50 tolerated(1) benign(0.001) TCGA-46-3769-01 X 69282924 69282924 G T OTUD6A Nonsense_Mutation p.E184* 0.71 TCGA-46-3769-01 X 69424174 69424174 T A DGAT2L6 Missense_Mutation p.Y223N 0.80 deleterious(0) probably_damaging(1) TCGA-46-3769-01 X 70321014 70321014 C G FOXO4 Missense_Mutation p.L312V 0.67 deleterious(0.01) benign(0.039) TCGA-46-3769-01 X 73047462 73047462 G A XIST RNA 0.45 TCGA-46-3769-01 X 76938926 76938926 C A ATRX Missense_Mutation p.V608F 0.48 possibly_damaging(0.613) TCGA-46-3769-01 X 78616676 78616676 T A ITM2A Splice_Site p.X235_splice 0.40 TCGA-46-3769-01 X 86924368 86924368 A T KLHL4 Nonsense_Mutation p.K713* 0.61 TCGA-46-3769-01 Y 9305960 9305960 C A TSPY1 Silent p.R206R 0.16 TCGA-46-6025-01 10 102795364 102795364 G A SFXN3 Missense_Mutation p.R95H 0.09 deleterious(0) probably_damaging(0.924) TCGA-46-6025-01 10 104679152 104679152 C G CNNM2 Missense_Mutation p.I305M 0.55 deleterious(0) probably_damaging(0.999) TCGA-46-6025-01 10 105218313 105218325 GAAAGAGCACCAG - CALHM1 Frame_Shift_Del p.L62Cfs*6 0.22 TCGA-46-6025-01 10 129914179 129914179 C G MKI67 Missense_Mutation p.D165H 0.25 tolerated(0.21) possibly_damaging(0.804) TCGA-46-6025-01 10 13231032 13231032 A G MCM10 Missense_Mutation p.D457G 0.24 tolerated(0.06) benign(0.033) TCGA-46-6025-01 10 135373641 135373641 T A SYCE1 Silent p.S30S 0.33 TCGA-46-6025-01 10 16967745 16967745 T G CUBN Missense_Mutation p.R2100S 0.28 tolerated(0.12) possibly_damaging(0.817) TCGA-46-6025-01 10 27444468 27444468 T A MASTL Missense_Mutation p.V38E 0.19 deleterious(0) probably_damaging(0.951) TCGA-46-6025-01 10 50723771 50723771 C G ERCC6-PGBD3 Missense_Mutation p.D932H 0.48 deleterious_low_confidence(0.04) unknown(0) TCGA-46-6025-01 10 74451889 74451889 G C MCU 5'UTR 0.33 TCGA-46-6025-01 10 82034380 82034380 C T MAT1A Silent p.P327P 0.34 TCGA-46-6025-01 11 1101629 1101629 G A MUC2 Missense_Mutation p.V2548M 0.10 unknown(0) TCGA-46-6025-01 11 113683058 113683074 TCAGGCCTCCATAGGAA - USP28 Frame_Shift_Del p.D632Efs*4 0.16 TCGA-46-6025-01 11 130332592 130332599 TGGGCCGA - ADAMTS15 Frame_Shift_Del p.A488Hfs*95 0.19 TCGA-46-6025-01 11 134037950 134037950 C G NCAPD3 Missense_Mutation p.D1172H 0.25 deleterious(0.02) possibly_damaging(0.897) TCGA-46-6025-01 11 20057595 20057595 C T NAV2 Silent p.S976S 0.15 TCGA-46-6025-01 11 46709766 46709766 G C ARHGAP1 Missense_Mutation p.R92G 0.15 deleterious(0) probably_damaging(0.993) TCGA-46-6025-01 11 55658946 55658946 G A TRIM51 Silent p.V399V 0.35 TCGA-46-6025-01 11 61906362 61906382 CCCTGAGAACAATGGAAATAA - INCENP In_Frame_Del p.P393_N399del 0.11 TCGA-46-6025-01 11 62300231 62300231 G A AHNAK Missense_Mutation p.T553I 0.10 benign(0.26) TCGA-46-6025-01 11 67560688 67560688 C A FAM86C2P RNA 0.11 TCGA-46-6025-01 11 93480476 93480476 C T C11orf54 5'UTR 0.26 TCGA-46-6025-01 12 101018492 101018492 A G GAS2L3 Missense_Mutation p.K637E 0.06 deleterious(0.01) benign(0.424) TCGA-46-6025-01 12 101768637 101768637 G C UTP20 Missense_Mutation p.E2395Q 0.15 deleterious(0) possibly_damaging(0.831) TCGA-46-6025-01 12 112893784 112893784 G T PTPN11 Nonsense_Mutation p.E225* 0.26 TCGA-46-6025-01 12 121682977 121682991 CCTCCCGCCGGCTGC - CAMKK2 In_Frame_Del p.G502_E506del 0.18 TCGA-46-6025-01 12 122277617 122277617 C G HPD 3'UTR 0.19 TCGA-46-6025-01 12 124326030 124326030 G A DNAH10 Missense_Mutation p.M1648I 0.66 probably_damaging(0.998) TCGA-46-6025-01 12 125465138 125465138 A G DHX37 Silent p.A212A 0.06 TCGA-46-6025-01 12 14976670 14976670 T C C12orf60 3'UTR 0.55 TCGA-46-6025-01 12 45000994 45000994 A C NELL2 Missense_Mutation p.C591G 0.16 deleterious(0) probably_damaging(0.991) TCGA-46-6025-01 12 48391460 48391460 C G COL2A1 Missense_Mutation p.E154Q 0.19 unknown(0) TCGA-46-6025-01 12 54110074 54110074 C A CALCOCO1 Missense_Mutation p.K325N 0.25 tolerated(0.26) possibly_damaging(0.701) TCGA-46-6025-01 12 78593181 78593181 A G NAV3 Silent p.K2173K 0.43 TCGA-46-6025-01 12 9227264 9227264 A G A2M Silent p.Y1216Y 0.15 TCGA-46-6025-01 13 30096564 30096564 C T SLC7A1 Missense_Mutation p.R360Q 0.58 tolerated(0.11) probably_damaging(1) TCGA-46-6025-01 13 30423650 30423650 A G UBL3 Missense_Mutation p.M9T 0.25 tolerated(0.36) benign(0.003) TCGA-46-6025-01 13 40233518 40233518 C G COG6 Silent p.L57L 0.57 TCGA-46-6025-01 14 106321137 106321137 G A IGHM Silent p.A284A 0.13 TCGA-46-6025-01 14 20848129 20848129 G T TEP1 Missense_Mutation p.A1696D 0.25 deleterious(0.01) possibly_damaging(0.886) TCGA-46-6025-01 14 20848130 20848130 C A TEP1 Missense_Mutation p.A1696S 0.25 tolerated(0.14) possibly_damaging(0.728) TCGA-46-6025-01 14 21238568 21238568 G C EDDM3B Missense_Mutation p.D87H 0.54 deleterious(0.01) possibly_damaging(0.761) TCGA-46-6025-01 14 21542304 21542304 G A ARHGEF40 Missense_Mutation p.E139K 0.34 tolerated(0.36) probably_damaging(0.952) TCGA-46-6025-01 14 22749414 22749414 A G TRAV38-2DV8 Silent p.T44T 0.23 TCGA-46-6025-01 14 39736556 39736556 C G CTAGE5 5'UTR 0.58 TCGA-46-6025-01 14 69866033 69866033 A G SLC39A9 5'UTR 0.36 TCGA-46-6025-01 14 73459962 73459962 A G ZFYVE1 Silent p.T364T 0.26 TCGA-46-6025-01 14 94582193 94582193 T C IFI27 Missense_Mutation p.I63T 0.56 deleterious(0.03) benign(0.415) TCGA-46-6025-01 15 25226980 25226980 C T SNRPN 3'Flank 0.43 TCGA-46-6025-01 15 28231737 28231737 A T OCA2 Missense_Mutation p.V412E 0.17 deleterious(0) probably_damaging(0.998) TCGA-46-6025-01 15 31325029 31325029 G A TRPM1 Missense_Mutation p.R956C 0.28 deleterious(0) probably_damaging(1) TCGA-46-6025-01 15 43818818 43818818 G A MAP1A Missense_Mutation p.G1716E 0.52 probably_damaging(1) TCGA-46-6025-01 15 52161438 52161438 C G TMOD3 Missense_Mutation p.R51G 0.19 deleterious(0) probably_damaging(0.95) TCGA-46-6025-01 15 53081638 53081638 G T ONECUT1 Missense_Mutation p.S148R 0.09 deleterious(0) probably_damaging(0.999) TCGA-46-6025-01 15 63111814 63111814 A G TLN2 Missense_Mutation p.M2291V 0.67 deleterious(0.03) benign(0.007) TCGA-46-6025-01 15 70351076 70351076 C G TLE3 Missense_Mutation p.D282H 0.22 deleterious(0.04) possibly_damaging(0.907) TCGA-46-6025-01 15 74326667 74326667 A G PML Intron 0.76 TCGA-46-6025-01 15 90897929 90897929 G A ZNF774 Missense_Mutation p.G13R 0.21 tolerated_low_confidence(0.28) benign(0.004) TCGA-46-6025-01 16 1816271 1816271 G A MAPK8IP3 Missense_Mutation p.E893K 0.22 deleterious(0.04) possibly_damaging(0.694) TCGA-46-6025-01 16 2126131 2126131 G A TSC2 Missense_Mutation p.R901H 0.24 deleterious(0) probably_damaging(0.999) TCGA-46-6025-01 16 2158510 2158510 G A PKD1 Missense_Mutation p.R2220W 0.57 probably_damaging(0.995) TCGA-46-6025-01 16 23702239 23702239 C G ERN2 Missense_Mutation p.R946S 0.19 tolerated(0.16) benign(0.023) TCGA-46-6025-01 16 3823774 3823774 G A CREBBP Missense_Mutation p.P814L 0.67 benign(0.122) TCGA-46-6025-01 16 46766205 46766205 C G MYLK3 Missense_Mutation p.E459D 0.24 tolerated(0.53) benign(0.04) TCGA-46-6025-01 16 55519555 55519555 G T MMP2 Missense_Mutation p.C233F 0.30 deleterious(0) probably_damaging(0.998) TCGA-46-6025-01 16 731969 731969 G T JMJD8 3'UTR 0.32 TCGA-46-6025-01 16 76461469 76461469 C T CNTNAP4 Nonsense_Mutation p.R146* 0.26 TCGA-46-6025-01 17 18638551 18638551 T C TRIM16L Silent p.P275P 0.17 TCGA-46-6025-01 17 27958769 27958769 G T SSH2 Missense_Mutation p.T1121K 0.25 tolerated_low_confidence(0.09) benign(0.066) TCGA-46-6025-01 17 28750565 28750565 G C CPD Missense_Mutation p.E567Q 0.56 deleterious(0) probably_damaging(1) TCGA-46-6025-01 17 3680912 3680912 G T ITGAE Missense_Mutation p.P26H 0.22 deleterious(0.02) possibly_damaging(0.619) TCGA-46-6025-01 17 37228713 37228713 T G PLXDC1 Silent p.A404A 0.35 TCGA-46-6025-01 17 37842247 37842247 C T PGAP3 Silent p.K69K 0.16 TCGA-46-6025-01 17 39619203 39619203 C T KRT32 Missense_Mutation p.A366T 0.08 deleterious(0.04) possibly_damaging(0.575) TCGA-46-6025-01 17 42992539 42992539 C A GFAP Missense_Mutation p.A106S 0.14 deleterious(0.04) benign(0.02) TCGA-46-6025-01 17 42992540 42992540 C G GFAP Silent p.R105R 0.14 TCGA-46-6025-01 17 4936615 4936615 G T SLC52A1 Missense_Mutation p.L359M 0.33 tolerated(0.64) probably_damaging(1) TCGA-46-6025-01 17 51902198 51902198 C T KIF2B Missense_Mutation p.P602S 0.32 tolerated(0.77) benign(0) TCGA-46-6025-01 17 56329601 56329601 C G LPO Missense_Mutation p.A280G 0.16 deleterious(0) benign(0.3) TCGA-46-6025-01 17 60759627 60759627 C A MRC2 Silent p.A945A 0.68 TCGA-46-6025-01 17 61958797 61958797 G A GH2 Silent p.P31P 0.11 TCGA-46-6025-01 17 65850532 65850532 C T BPTF Silent p.L364L 0.16 TCGA-46-6025-01 17 7227500 7227500 G C NEURL4 Missense_Mutation p.N663K 0.04 deleterious(0.01) probably_damaging(0.978) TCGA-46-6025-01 17 72539080 72539080 T A CD300C Silent p.S149S 0.13 TCGA-46-6025-01 17 7578416 7578416 C A TP53 Missense_Mutation p.V172F 0.47 deleterious(0) probably_damaging(0.984) TCGA-46-6025-01 17 78317711 78317711 A G RNF213 Missense_Mutation p.M2080V 0.14 possibly_damaging(0.872) TCGA-46-6025-01 17 8076865 8076865 C G TMEM107 3'Flank 0.38 TCGA-46-6025-01 17 8192261 8192261 C G SLC25A35 3'UTR 0.54 TCGA-46-6025-01 18 2656159 2656159 T A SMCHD1 Missense_Mutation p.Y29N 0.58 deleterious(0.04) benign(0.289) TCGA-46-6025-01 18 30926220 30926220 A G CCDC178 Missense_Mutation p.W205R 0.53 deleterious(0) probably_damaging(0.993) TCGA-46-6025-01 18 43204660 43204660 C A SLC14A2 Missense_Mutation p.P11T 0.45 tolerated_low_confidence(0.23) benign(0.024) TCGA-46-6025-01 19 10610487 10610487 G A KEAP1 Nonsense_Mutation p.Q75* 0.54 TCGA-46-6025-01 19 11446165 11446165 C A RAB3D Missense_Mutation p.V144F 0.35 deleterious(0.04) possibly_damaging(0.543) TCGA-46-6025-01 19 16318920 16318920 T C AP1M1 Missense_Mutation p.F120L 0.49 deleterious(0.02) possibly_damaging(0.868) TCGA-46-6025-01 19 17449876 17449876 C T GTPBP3 Silent p.I235I 0.24 TCGA-46-6025-01 19 19389509 19389509 T - SUGP1 Frame_Shift_Del p.K542Rfs*3 0.25 TCGA-46-6025-01 19 24288805 24288805 A T ZNF254 Missense_Mutation p.I32F 0.22 deleterious(0.04) benign(0.18) TCGA-46-6025-01 19 37678108 37678108 T C ZNF585B Missense_Mutation p.I111V 0.20 tolerated(0.27) benign(0.004) TCGA-46-6025-01 19 44891507 44891507 G C ZNF285 Missense_Mutation p.S300R 0.32 deleterious(0) benign(0.206) TCGA-46-6025-01 19 47200993 47200993 C G PRKD2 Silent p.T412T 0.24 TCGA-46-6025-01 19 50412728 50412728 C G NUP62 Missense_Mutation p.G113R 0.75 deleterious(0) possibly_damaging(0.751) TCGA-46-6025-01 19 53884450 53884450 G A ZNF525 Silent p.Q206Q 0.12 TCGA-46-6025-01 1 109740262 109740262 C T KIAA1324 Missense_Mutation p.A763V 0.18 deleterious(0) probably_damaging(0.936) TCGA-46-6025-01 1 113244258 113244258 C G RHOC Missense_Mutation p.K162N 0.45 deleterious(0.02) benign(0.15) TCGA-46-6025-01 1 117297478 117297478 A T CD2 Missense_Mutation p.H96L 0.17 tolerated(0.09) benign(0.247) TCGA-46-6025-01 1 1403985 1403985 T C ATAD3C 3'UTR 0.41 TCGA-46-6025-01 1 146638191 146638191 C G PRKAB2 Missense_Mutation p.V142L 0.21 tolerated(0.07) benign(0.004) TCGA-46-6025-01 1 150484888 150484888 T A ECM1 Missense_Mutation p.L409M 0.31 tolerated(0.17) benign(0.015) TCGA-46-6025-01 1 152005131 152005131 G A S100A11 3'UTR 0.25 TCGA-46-6025-01 1 155167970 155167970 C G THBS3 Missense_Mutation p.D706H 0.31 deleterious(0) probably_damaging(1) TCGA-46-6025-01 1 155695241 155695241 A T DAP3 Missense_Mutation p.K113N 0.17 tolerated(0.1) possibly_damaging(0.513) TCGA-46-6025-01 1 156309473 156309473 G C TSACC 5'UTR 0.25 TCGA-46-6025-01 1 157557276 157557276 C T FCRL4 Missense_Mutation p.E213K 0.52 tolerated(0.1) benign(0.077) TCGA-46-6025-01 1 157660175 157660175 G A FCRL3 Silent p.I520I 0.11 TCGA-46-6025-01 1 157718392 157718392 C T FCRL2 Silent p.V470V 0.45 TCGA-46-6025-01 1 157801630 157801630 G C CD5L 3'UTR 0.51 TCGA-46-6025-01 1 160917718 160917718 C G ITLN2 Splice_Site p.X275_splice 0.16 TCGA-46-6025-01 1 162745548 162745548 G A DDR2 Missense_Mutation p.E655K 0.04 deleterious(0) probably_damaging(0.997) TCGA-46-6025-01 1 172414239 172414239 T C C1orf105 Silent p.I16I 0.17 TCGA-46-6025-01 1 175372327 175372327 C T TNR Missense_Mutation p.E309K 0.38 tolerated(0.11) benign(0.297) TCGA-46-6025-01 1 175916338 175916338 G A RFWD2 Missense_Mutation p.T724I 0.22 tolerated(0.16) benign(0.018) TCGA-46-6025-01 1 200524526 200524526 G C KIF14 Missense_Mutation p.I1470M 0.23 tolerated(0.22) benign(0.027) TCGA-46-6025-01 1 201926485 201926485 A G TIMM17A Missense_Mutation p.K35E 0.14 deleterious(0) probably_damaging(0.996) TCGA-46-6025-01 1 203030153 203030153 C T PPFIA4 Missense_Mutation p.T441I 0.37 tolerated(0.06) benign(0.015) TCGA-46-6025-01 1 204197299 204197299 T G PLEKHA6 Silent p.S981S 0.45 TCGA-46-6025-01 1 32842193 32842193 G A BSDC1 Missense_Mutation p.P293S 0.33 tolerated(0.08) possibly_damaging(0.615) TCGA-46-6025-01 1 33354482 33354482 G C HPCA 5'UTR 0.17 TCGA-46-6025-01 1 39800459 39800459 C T MACF1 Intron 0.18 TCGA-46-6025-01 1 44685944 44685944 T G DMAP1 Missense_Mutation p.I436S 0.25 deleterious(0) benign(0.256) TCGA-46-6025-01 1 63879795 63879795 C T ALG6 Missense_Mutation p.R294C 0.36 tolerated(0.06) benign(0.378) TCGA-46-6025-01 1 86591318 86591318 T C COL24A1 Missense_Mutation p.Y234C 0.40 deleterious(0) probably_damaging(0.999) TCGA-46-6025-01 1 9791234 9791234 C A CLSTN1 Intron 0.25 TCGA-46-6025-01 20 30674582 30674582 C G HCK Missense_Mutation p.I329M 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-46-6025-01 20 39978997 39978997 A T LPIN3 Silent p.P354P 0.26 TCGA-46-6025-01 20 40043905 40043905 C A CHD6 Missense_Mutation p.R2287L 0.35 deleterious(0) probably_damaging(0.998) TCGA-46-6025-01 20 47683023 47683023 G A CSE1L Missense_Mutation p.R151H 0.05 tolerated(0.39) benign(0.002) TCGA-46-6025-01 20 62598349 62598349 C A ZNF512B Silent p.L91L 0.13 TCGA-46-6025-01 21 37618877 37618877 C G DOPEY2 Silent p.S1533S 0.39 TCGA-46-6025-01 22 23264868 23264868 C A IGLC7 Missense_Mutation p.P35Q 0.14 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-46-6025-01 22 29445798 29445820 GGCCGACTGCCCAGGCAGCGACA - ZNRF3 Frame_Shift_Del p.A544Qfs*15 0.65 TCGA-46-6025-01 22 30415746 30415746 G T MTMR3 Nonsense_Mutation p.E700* 0.31 TCGA-46-6025-01 22 30977576 30977576 G C PES1 Missense_Mutation p.T229R 0.09 deleterious(0) probably_damaging(0.997) TCGA-46-6025-01 22 32009832 32009832 C G SFI1 Missense_Mutation p.A996G 0.24 tolerated(0.09) benign(0.275) TCGA-46-6025-01 22 35942906 35942906 A C RASD2 Missense_Mutation p.K17T 0.36 deleterious(0.01) possibly_damaging(0.889) TCGA-46-6025-01 22 39883552 39883552 C T MGAT3 Missense_Mutation p.P67L 0.19 deleterious_low_confidence(0.03) benign(0.002) TCGA-46-6025-01 22 45795100 45795100 C G SMC1B Missense_Mutation p.E330Q 0.19 tolerated(0.28) benign(0.084) TCGA-46-6025-01 22 47089354 47089354 T A CERK Nonsense_Mutation p.K366* 0.17 TCGA-46-6025-01 2 105886097 105886097 C T TGFBRAP1 Missense_Mutation p.E680K 0.52 deleterious(0.02) benign(0.016) TCGA-46-6025-01 2 109103003 109103003 A G GCC2 Missense_Mutation p.I1277V 0.08 tolerated(0.67) benign(0.001) TCGA-46-6025-01 2 127958804 127958804 C A CYP27C1 Missense_Mutation p.M94I 0.54 tolerated(0.14) benign(0.122) TCGA-46-6025-01 2 130914945 130914945 G T SMPD4 Missense_Mutation p.H365N 0.46 deleterious(0) benign(0.009) TCGA-46-6025-01 2 157186681 157186681 C T NR4A2 Silent p.A6A 0.10 TCGA-46-6025-01 2 1652209 1652209 C T PXDN Missense_Mutation p.D1115N 0.29 deleterious(0) probably_damaging(1) TCGA-46-6025-01 2 175440042 175440042 C T WIPF1 Missense_Mutation p.G83E 0.28 tolerated(0.14) benign(0.118) TCGA-46-6025-01 2 179434109 179434109 C G TTN Missense_Mutation p.E25584Q 0.36 TCGA-46-6025-01 2 179468920 179468920 C T TTN Missense_Mutation p.R18165H 0.22 TCGA-46-6025-01 2 179550282 179550282 G A TTN Silent p.H10785H 0.34 TCGA-46-6025-01 2 179733966 179733966 C T CCDC141 Missense_Mutation p.V758I 0.33 tolerated(0.16) possibly_damaging(0.516) TCGA-46-6025-01 2 187529339 187529339 G A ITGAV Missense_Mutation p.D682N 0.15 deleterious(0) probably_damaging(1) TCGA-46-6025-01 2 207027509 207027538 GAAGATGATAAAGTTGGAACAGATATGCTG - EEF1B2 In_Frame_Del p.D195_E204del 0.19 TCGA-46-6025-01 2 20840876 20840876 G C HS1BP3 Missense_Mutation p.A88G 0.11 deleterious(0) possibly_damaging(0.825) TCGA-46-6025-01 2 208478081 208478081 T G METTL21A Missense_Mutation p.T116P 0.54 tolerated(1) benign(0) TCGA-46-6025-01 2 21228898 21228898 A C APOB Silent p.P3614P 0.21 TCGA-46-6025-01 2 220083188 220083188 T G ABCB6 Missense_Mutation p.I70L 0.16 tolerated(0.66) benign(0) TCGA-46-6025-01 2 220089359 220089359 C T ATG9A Missense_Mutation p.R245H 0.26 tolerated(0.1) probably_damaging(0.965) TCGA-46-6025-01 2 238234216 238234216 C A COL6A3 Missense_Mutation p.K3160N 0.14 unknown(0) TCGA-46-6025-01 2 29152454 29152454 G C WDR43 Missense_Mutation p.E439Q 0.39 tolerated(0.07) possibly_damaging(0.893) TCGA-46-6025-01 2 43452225 43452225 C T ZFP36L2 Missense_Mutation p.D240N 0.48 tolerated(0.16) benign(0.094) TCGA-46-6025-01 2 44079798 44079798 T A ABCG8 Missense_Mutation p.V252E 0.37 deleterious(0) probably_damaging(0.994) TCGA-46-6025-01 2 46237534 46237534 T - PRKCE Frame_Shift_Del p.L439* 0.29 TCGA-46-6025-01 2 69093080 69093080 C T BMP10 Missense_Mutation p.G320R 0.37 tolerated(0.13) probably_damaging(0.996) TCGA-46-6025-01 2 75116380 75116389 TGGCCCTGCT - HK2 Frame_Shift_Del p.L795Rfs*10 0.48 TCGA-46-6025-01 3 111766781 111766781 C A TMPRSS7 Missense_Mutation p.S183Y 0.19 deleterious(0) possibly_damaging(0.741) TCGA-46-6025-01 3 111901040 111901040 T G SLC9C1 Missense_Mutation p.E863D 0.48 tolerated(0.34) benign(0.003) TCGA-46-6025-01 3 112357363 112357363 G A CCDC80 Missense_Mutation p.R464W 0.43 deleterious(0.02) benign(0.002) TCGA-46-6025-01 3 169824720 169824720 T C PHC3 Missense_Mutation p.M790V 0.08 tolerated(0.56) benign(0.045) TCGA-46-6025-01 3 183904012 183904012 A G ABCF3 Missense_Mutation p.E6G 0.08 deleterious(0.04) benign(0.075) TCGA-46-6025-01 3 184580719 184580719 G C VPS8 Missense_Mutation p.S420T 0.10 tolerated(0.52) benign(0.013) TCGA-46-6025-01 3 25638136 25638136 C A RARB 3'UTR 0.17 TCGA-46-6025-01 3 37514869 37514869 G T ITGA9 Missense_Mutation p.G113V 0.72 deleterious(0) probably_damaging(1) TCGA-46-6025-01 3 46245443 46245443 A T CCR1 Missense_Mutation p.I121N 0.53 deleterious(0.02) probably_damaging(0.975) TCGA-46-6025-01 3 46449908 46449908 G A CCRL2 Missense_Mutation p.G125D 0.14 deleterious(0) probably_damaging(0.995) TCGA-46-6025-01 3 48684274 48684274 G C CELSR3 Missense_Mutation p.S2406C 0.45 deleterious(0.01) probably_damaging(0.95) TCGA-46-6025-01 3 49053093 49053093 A G DALRD3 Silent p.L520L 0.36 TCGA-46-6025-01 4 148653489 148653489 C A ARHGAP10 Missense_Mutation p.L13I 0.26 deleterious(0) probably_damaging(0.952) TCGA-46-6025-01 4 148968149 148968149 C G ARHGAP10 Missense_Mutation p.D658E 0.05 tolerated(0.57) benign(0.004) TCGA-46-6025-01 4 159526275 159526275 C G RXFP1 Missense_Mutation p.H150D 0.21 tolerated(0.63) benign(0.04) TCGA-46-6025-01 4 1821200 1821200 C A LETM1 Splice_Site p.X537_splice 0.27 TCGA-46-6025-01 4 3240265 3240265 A C HTT Missense_Mutation p.N2995H 0.29 probably_damaging(0.999) TCGA-46-6025-01 4 420732 420732 G A ABCA11P RNA 0.46 TCGA-46-6025-01 4 42895454 42895454 T A GRXCR1 Missense_Mutation p.D57E 0.56 tolerated(1) benign(0.001) TCGA-46-6025-01 4 88415203 88415203 G A SPARCL1 Missense_Mutation p.P250L 0.37 deleterious(0.01) benign(0.263) TCGA-46-6025-01 4 89052230 89052230 T G ABCG2 Missense_Mutation p.K172Q 0.28 deleterious(0.04) benign(0.378) TCGA-46-6025-01 5 101816003 101816003 T C SLCO6A1 Missense_Mutation p.Y165C 0.58 deleterious(0.02) probably_damaging(1) TCGA-46-6025-01 5 115782949 115782951 AGG T SEMA6A Frame_Shift_Del p.L818Afs*10 0.27 TCGA-46-6025-01 5 13867922 13867922 G A DNAH5 Silent p.F1338F 0.18 TCGA-46-6025-01 5 139217217 139217217 A G PSD2 Missense_Mutation p.Y558C 0.26 deleterious(0.03) probably_damaging(1) TCGA-46-6025-01 5 140590009 140590009 C G PCDHB12 Missense_Mutation p.N510K 0.24 deleterious_low_confidence(0.01) benign(0.434) TCGA-46-6025-01 5 150563006 150563006 C G CCDC69 Missense_Mutation p.A295P 0.21 deleterious(0.03) possibly_damaging(0.488) TCGA-46-6025-01 5 16453235 16453235 C A ZNF622 Missense_Mutation p.R398I 0.53 deleterious(0) possibly_damaging(0.863) TCGA-46-6025-01 5 33549326 33549326 C T ADAMTS12 Missense_Mutation p.E1430K 0.09 deleterious(0.05) possibly_damaging(0.661) TCGA-46-6025-01 5 484769 484769 C A SLC9A3 Silent p.V266V 0.54 TCGA-46-6025-01 5 90015976 90015976 C T GPR98 Silent p.L3187L 0.74 TCGA-46-6025-01 6 105821374 105821374 G A PREP Silent p.F155F 0.45 TCGA-46-6025-01 6 110746145 110746145 G A SLC22A16 Silent p.L555L 0.56 TCGA-46-6025-01 6 132891506 132891506 G A TAAR6 Missense_Mutation p.A16T 0.17 deleterious(0.01) benign(0.026) TCGA-46-6025-01 6 160450647 160450647 C T IGF2R Missense_Mutation p.A281V 0.39 deleterious(0) probably_damaging(0.974) TCGA-46-6025-01 6 28265739 28265739 A T PGBD1 Missense_Mutation p.Q280H 0.18 tolerated_low_confidence(0.23) benign(0.001) TCGA-46-6025-01 6 29054387 29054387 C A OR2B3 Missense_Mutation p.L213F 0.53 tolerated(0.16) benign(0.215) TCGA-46-6025-01 6 31541077 31541077 C G LTA Missense_Mutation p.N75K 0.16 tolerated(0.28) benign(0) TCGA-46-6025-01 6 42832465 42832465 C T GLTSCR1L Missense_Mutation p.R841W 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.59) TCGA-46-6025-01 6 44197764 44197764 C A SLC29A1 Silent p.I145I 0.46 TCGA-46-6025-01 6 71138052 71138054 GAA - FAM135A In_Frame_Del p.E3del 0.23 TCGA-46-6025-01 7 100680562 100680562 A C MUC17 Silent p.T1955T 0.23 TCGA-46-6025-01 7 102574465 102574465 G C LRRC17 Silent p.A35A 0.26 TCGA-46-6025-01 7 131099445 131099445 C T MKLN1 Nonsense_Mutation p.Q275* 0.37 TCGA-46-6025-01 7 138546088 138546088 C T KIAA1549 Missense_Mutation p.E1682K 0.36 deleterious(0) probably_damaging(0.999) TCGA-46-6025-01 7 142162112 142162112 G T TRBV6-6 Silent p.R55R 0.26 TCGA-46-6025-01 7 148716172 148716172 G A PDIA4 Silent p.A129A 0.59 TCGA-46-6025-01 7 43436457 43436457 A G HECW1 Silent p.G200G 0.38 TCGA-46-6025-01 7 55750339 55750339 G T RNU6-389P 5'Flank 0.31 TCGA-46-6025-01 7 72891722 72891722 T A BAZ1B Missense_Mutation p.E690V 0.48 deleterious(0) probably_damaging(0.999) TCGA-46-6025-01 7 72891723 72891723 C A BAZ1B Nonsense_Mutation p.E690* 0.47 TCGA-46-6025-01 7 99917242 99917242 C G SPDYE3 Missense_Mutation p.F467L 0.22 tolerated(0.09) benign(0.193) TCGA-46-6025-01 8 134488234 134488234 G C ST3GAL1 Missense_Mutation p.L12V 0.13 benign(0.192) TCGA-46-6025-01 8 17053096 17053099 CAAG TGGTATA ZDHHC2 In_Frame_Ins p.K113delinsGI 0.15 TCGA-46-6025-01 8 30916059 30916059 G T WRN Missense_Mutation p.K32N 0.59 deleterious(0) possibly_damaging(0.792) TCGA-46-6025-01 8 3263552 3263552 C T CSMD1 Missense_Mutation p.E755K 0.47 possibly_damaging(0.769) TCGA-46-6025-01 8 36662792 36662792 T A KCNU1 Missense_Mutation p.F153I 0.24 deleterious(0) probably_damaging(1) TCGA-46-6025-01 8 77617287 77617287 A G ZFHX4 Missense_Mutation p.I322V 0.54 benign(0.068) TCGA-46-6025-01 9 125316421 125316421 G T OR1N2 Nonsense_Mutation p.G325* 0.19 TCGA-46-6025-01 9 21968188 21968188 T C CDKN2A 3'UTR 0.63 TCGA-46-6025-01 9 77377803 77377803 G A TRPM6 Silent p.L1262L 0.16 TCGA-46-6025-01 9 80923366 80923366 G A PSAT1 Missense_Mutation p.G203S 0.19 deleterious(0.01) probably_damaging(0.979) TCGA-46-6025-01 9 84606392 84606392 C A SPATA31D1 Nonsense_Mutation p.S336* 0.22 TCGA-46-6025-01 X 118230627 118230627 C G KIAA1210 Missense_Mutation p.D366H 0.67 tolerated(0.55) probably_damaging(0.927) TCGA-46-6025-01 X 122846737 122846737 G A THOC2 Silent p.L31L 0.30 TCGA-46-6025-01 X 123657279 123657279 G C TENM1 Missense_Mutation p.P990A 0.38 tolerated(0.79) benign(0.021) TCGA-46-6025-01 X 129205107 129205107 G C ELF4 Missense_Mutation p.F239L 0.36 deleterious(0) probably_damaging(0.996) TCGA-46-6025-01 X 19968911 19968911 C T CXorf23 Missense_Mutation p.E569K 0.33 deleterious(0) probably_damaging(0.967) TCGA-46-6025-01 X 48318223 48318223 C G SLC38A5 Missense_Mutation p.A370P 0.59 tolerated(1) benign(0.007) TCGA-46-6025-01 X 50051612 50051612 C G CCNB3 Missense_Mutation p.T148S 0.59 deleterious(0.01) benign(0.091) TCGA-46-6025-01 X 53578078 53578078 C A HUWE1 Missense_Mutation p.D3057Y 0.53 probably_damaging(0.961) TCGA-46-6025-01 X 63405898 63405898 A G AMER1 3'UTR 0.35 TCGA-46-6025-01 X 65420453 65420453 C A HEPH Missense_Mutation p.L700M 0.32 tolerated(0.15) probably_damaging(0.973) TCGA-46-6025-01 Y 15448075 15448075 A G UTY Silent p.N637N 0.43 TCGA-46-6026-01 10 101716838 101716838 C A DNMBP Silent p.R131R 0.45 TCGA-46-6026-01 10 102986907 102986907 G A LBX1 3'UTR 0.51 TCGA-46-6026-01 10 103988611 103988611 C T ELOVL3 Missense_Mutation p.R139W 0.36 deleterious(0) benign(0.22) TCGA-46-6026-01 10 103990395 103990395 G T PITX3 Nonsense_Mutation p.S262* 0.14 TCGA-46-6026-01 10 103990840 103990840 G T PITX3 Missense_Mutation p.R114S 0.17 deleterious(0) probably_damaging(0.913) TCGA-46-6026-01 10 121618678 121618678 C T MCMBP Missense_Mutation p.E54K 0.50 deleterious(0.02) benign(0.254) TCGA-46-6026-01 10 27703284 27703284 C A PTCHD3 5'UTR 0.40 TCGA-46-6026-01 10 51562373 51562373 C A MSMB Silent p.T106T 0.45 TCGA-46-6026-01 10 68686704 68686704 C T LRRTM3 Silent p.S10S 0.19 TCGA-46-6026-01 10 81052019 81052019 T C ZMIZ1 Missense_Mutation p.V288A 0.41 benign(0.009) TCGA-46-6026-01 10 85981876 85981876 C - LRIT2 Frame_Shift_Del p.A485Qfs*51 0.32 TCGA-46-6026-01 10 93390010 93390011 - A PPP1R3C Frame_Shift_Ins p.G210Wfs*4 0.36 TCGA-46-6026-01 11 107920638 107920638 G A CUL5 Missense_Mutation p.D86N 0.25 deleterious(0.02) possibly_damaging(0.579) TCGA-46-6026-01 11 107920721 107920721 A G CUL5 Silent p.Q113Q 0.63 TCGA-46-6026-01 11 108202603 108202603 C A ATM Intron 0.20 TCGA-46-6026-01 11 108385055 108385055 T A EXPH5 Silent p.S393S 0.56 TCGA-46-6026-01 11 119149399 119149399 G A CBL Missense_Mutation p.M469I 0.51 tolerated(0.11) benign(0) TCGA-46-6026-01 11 124875041 124875041 A G CCDC15 Missense_Mutation p.M782V 0.80 deleterious(0.02) possibly_damaging(0.889) TCGA-46-6026-01 11 132205049 132205049 C T NTM 3'UTR 0.64 TCGA-46-6026-01 11 17474672 17474672 T C ABCC8 Silent p.A390A 0.17 TCGA-46-6026-01 11 34938280 34938280 A G PDHX Silent p.V26V 0.34 TCGA-46-6026-01 11 4703724 4703724 G A OR51E2 Missense_Mutation p.S73F 0.60 deleterious(0.01) probably_damaging(0.949) TCGA-46-6026-01 11 5153137 5153137 C T OR52A5 Missense_Mutation p.A246T 0.51 deleterious(0.05) benign(0.35) TCGA-46-6026-01 11 55322751 55322751 G A OR4C15 Missense_Mutation p.M323I 0.27 tolerated_low_confidence(0.52) benign(0.009) TCGA-46-6026-01 11 55340262 55340262 T C OR4C16 Missense_Mutation p.L220S 0.25 deleterious(0) probably_damaging(1) TCGA-46-6026-01 11 55340263 55340263 G A OR4C16 Silent p.L220L 0.25 TCGA-46-6026-01 11 5701330 5701330 C T TRIM5 Silent p.L26L 0.41 TCGA-46-6026-01 11 57970680 57970684 AGGGA GGGG OR1S2 Frame_Shift_Del p.S324Pfs*? 0.20 TCGA-46-6026-01 11 59574276 59574276 G T MRPL16 Silent p.G100G 0.59 TCGA-46-6026-01 11 60235940 60235940 A T MS4A1 Nonstop_Mutation p.*298Lext*11 0.23 TCGA-46-6026-01 11 65617738 65617738 G A SNX32 Missense_Mutation p.E124K 0.26 deleterious(0) possibly_damaging(0.77) TCGA-46-6026-01 11 66611788 66611788 C T RCE1 Missense_Mutation p.S135F 0.49 tolerated(0.15) possibly_damaging(0.448) TCGA-46-6026-01 11 71146383 71146383 C T DHCR7 3'UTR 0.29 TCGA-46-6026-01 11 88300267 88300267 G T GRM5 Missense_Mutation p.L862I 0.23 tolerated(0.18) benign(0.338) TCGA-46-6026-01 11 92600075 92600075 G T FAT3 Missense_Mutation p.A3943S 0.17 possibly_damaging(0.877) TCGA-46-6026-01 11 95546720 95546720 C T CEP57 Silent p.A157A 0.28 TCGA-46-6026-01 12 101505455 101505455 G T ANO4 Missense_Mutation p.G771V 0.46 deleterious(0.01) probably_damaging(0.996) TCGA-46-6026-01 12 104144435 104144435 C A STAB2 Missense_Mutation p.R2173S 0.58 deleterious(0.01) probably_damaging(0.998) TCGA-46-6026-01 12 110929836 110929836 C T VPS29 Missense_Mutation p.E179K 0.39 deleterious(0.03) benign(0.058) TCGA-46-6026-01 12 121229358 121229358 G T SPPL3 Missense_Mutation p.S35Y 0.34 deleterious(0) probably_damaging(0.976) TCGA-46-6026-01 12 132529905 132529905 G T EP400 Missense_Mutation p.V2276F 0.27 unknown(0) TCGA-46-6026-01 12 2224635 2224635 C T CACNA1C Missense_Mutation p.R99C 0.46 deleterious(0) probably_damaging(0.999) TCGA-46-6026-01 12 4763618 4763618 C T NDUFA9 Silent p.V70V 0.32 TCGA-46-6026-01 12 48531536 48531536 A G PFKM Silent p.A394A 0.27 TCGA-46-6026-01 12 50471078 50471078 C T ASIC1 Missense_Mutation p.T214M 0.41 tolerated(0.9) benign(0.133) TCGA-46-6026-01 12 50475335 50475336 GC - ASIC1 Frame_Shift_Del p.C543* 0.26 TCGA-46-6026-01 12 64891754 64891754 G C TBK1 Missense_Mutation p.K691N 0.44 tolerated(0.07) possibly_damaging(0.798) TCGA-46-6026-01 12 73057029 73057029 C G TRHDE 3'UTR 0.32 TCGA-46-6026-01 12 75687147 75687147 C T CAPS2 Missense_Mutation p.G368S 0.69 deleterious(0.03) probably_damaging(0.998) TCGA-46-6026-01 12 96266040 96266040 G A CCDC38 Missense_Mutation p.R493W 0.54 deleterious(0.02) benign(0.433) TCGA-46-6026-01 12 99837544 99837544 G T ANKS1B Missense_Mutation p.N494K 0.42 tolerated(0.17) benign(0.11) TCGA-46-6026-01 13 109793152 109793152 C A MYO16 Nonsense_Mutation p.S1509* 0.38 TCGA-46-6026-01 13 36141107 36141107 G A NBEA Missense_Mutation p.E2330K 0.45 tolerated(0.29) benign(0.139) TCGA-46-6026-01 13 36686298 36686298 T C DCLK1 Missense_Mutation p.K144R 0.46 tolerated(0.21) unknown(0) TCGA-46-6026-01 14 103371855 103371855 G T TRAF3 Nonsense_Mutation p.E481* 0.81 TCGA-46-6026-01 14 20849731 20849731 C A TEP1 Silent p.T1513T 0.85 TCGA-46-6026-01 14 42357019 42357019 C T LRFN5 Silent p.I397I 0.70 TCGA-46-6026-01 14 42361132 42361132 G T LRFN5 Missense_Mutation p.G689W 0.75 deleterious_low_confidence(0.02) benign(0.013) TCGA-46-6026-01 14 50623738 50623738 T A SOS2 Missense_Mutation p.Y679F 0.93 tolerated(0.25) possibly_damaging(0.537) TCGA-46-6026-01 14 55529998 55529998 G A MAPK1IP1L Silent p.V227V 0.19 TCGA-46-6026-01 14 76906001 76906001 T C ESRRB Missense_Mutation p.L102P 0.96 deleterious(0) probably_damaging(0.996) TCGA-46-6026-01 14 81950624 81950624 G A SEL1L Missense_Mutation p.A664V 0.84 deleterious(0) probably_damaging(0.998) TCGA-46-6026-01 14 91700917 91700917 C T GPR68 Missense_Mutation p.E160K 0.79 tolerated(1) benign(0.001) TCGA-46-6026-01 15 100339913 100339913 A T DNM1P46 RNA 0.23 TCGA-46-6026-01 15 22369024 22369024 G T OR4M2 Missense_Mutation p.R150M 0.14 tolerated(0.18) benign(0) TCGA-46-6026-01 15 25332892 25332892 C T SNORD116-20 RNA 0.29 TCGA-46-6026-01 15 58285190 58285190 C G ALDH1A2 Missense_Mutation p.E213Q 0.38 deleterious(0.01) benign(0.172) TCGA-46-6026-01 15 59063709 59063709 G C FAM63B Missense_Mutation p.D39H 0.40 tolerated_low_confidence(0.2) benign(0.012) TCGA-46-6026-01 15 65623939 65623939 C A IGDCC3 Nonsense_Mutation p.E403* 0.45 TCGA-46-6026-01 15 85345644 85345644 C A ZNF592 3'UTR 0.28 TCGA-46-6026-01 15 86122698 86122698 G A AKAP13 Missense_Mutation p.G467S 0.15 tolerated_low_confidence(0.58) benign(0.007) TCGA-46-6026-01 16 1272258 1272258 G T TPSG1 Missense_Mutation p.P199T 0.47 tolerated(0.37) benign(0.031) TCGA-46-6026-01 16 15813504 15813504 T C MYH11 Missense_Mutation p.T1681A 0.41 benign(0.004) TCGA-46-6026-01 16 23535757 23535757 C G EARS2 Missense_Mutation p.E503Q 0.41 deleterious(0) probably_damaging(1) TCGA-46-6026-01 16 25235842 25235842 G T AQP8 Missense_Mutation p.G183C 0.41 deleterious(0.04) possibly_damaging(0.852) TCGA-46-6026-01 16 4242878 4242878 C T SRL Missense_Mutation p.G233D 0.47 deleterious(0) probably_damaging(1) TCGA-46-6026-01 16 58743377 58743377 G T GOT2 Missense_Mutation p.Q372K 0.40 tolerated(0.26) benign(0.003) TCGA-46-6026-01 16 70867983 70867983 G A HYDIN Missense_Mutation p.R4496C 0.72 probably_damaging(0.942) TCGA-46-6026-01 16 89930203 89930203 T C SPIRE2 Missense_Mutation p.I571T 0.82 deleterious(0.03) possibly_damaging(0.462) TCGA-46-6026-01 16 9858401 9858401 C T GRIN2A Silent p.V1000V 0.48 TCGA-46-6026-01 17 10233701 10233701 C T MYH13 Intron 0.32 TCGA-46-6026-01 17 27935921 27935921 C T ANKRD13B Silent p.S158S 0.50 TCGA-46-6026-01 17 28543219 28543219 C T SLC6A4 Missense_Mutation p.A285T 0.24 deleterious(0) probably_damaging(1) TCGA-46-6026-01 17 33491078 33491078 T A UNC45B Silent p.T348T 0.54 TCGA-46-6026-01 17 38256403 38256403 T G NR1D1 5'UTR 0.30 TCGA-46-6026-01 17 40997994 40997994 A G AOC2 Missense_Mutation p.S451G 0.32 tolerated(0.63) benign(0) TCGA-46-6026-01 17 46703633 46703633 C T HOXB9 5'UTR 0.40 TCGA-46-6026-01 17 71346876 71346876 G A SDK2 Silent p.L1938L 0.50 TCGA-46-6026-01 17 72350424 72350424 C G KIF19 Missense_Mutation p.S811C 0.35 deleterious(0) probably_damaging(0.976) TCGA-46-6026-01 17 7577519 7577527 GATGGTGAG - TP53 In_Frame_Del p.L252_I254del 0.87 TCGA-46-6026-01 17 77914763 77914763 C T TBC1D16 Silent p.E733E 0.61 TCGA-46-6026-01 18 32455309 32455309 C T DTNA Missense_Mutation p.P530L 0.65 deleterious(0.01) benign(0.171) TCGA-46-6026-01 18 42531485 42531485 G T SETBP1 Missense_Mutation p.R727L 0.18 deleterious(0) probably_damaging(0.996) TCGA-46-6026-01 18 67795714 67795714 G C RTTN Missense_Mutation p.S1008C 0.21 deleterious(0) probably_damaging(0.922) TCGA-46-6026-01 18 74696745 74696745 T C RP11-862L9.3 3'Flank 0.26 TCGA-46-6026-01 19 1003150 1003150 C T GRIN3B Missense_Mutation p.H150Y 0.70 deleterious(0.02) benign(0.007) TCGA-46-6026-01 19 12058351 12058351 C T ZNF700 Silent p.N71N 0.68 TCGA-46-6026-01 19 12383498 12383498 C A ZNF44 Missense_Mutation p.R572S 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-46-6026-01 19 13002940 13002940 G A GCDH Silent p.R94R 0.21 TCGA-46-6026-01 19 13039467 13039467 G A FARSA Missense_Mutation p.R203W 0.63 deleterious(0) possibly_damaging(0.685) TCGA-46-6026-01 19 15565328 15565328 C T RASAL3 Silent p.L668L 0.08 TCGA-46-6026-01 19 21933957 21933957 G A ZNF100 Intron 0.73 TCGA-46-6026-01 19 22156530 22156530 A T ZNF208 Missense_Mutation p.W436R 0.19 tolerated(0.5) benign(0) TCGA-46-6026-01 19 23318762 23318762 C G ZNF730 Nonsense_Mutation p.S48* 0.69 TCGA-46-6026-01 19 35719356 35719356 G A FAM187B Silent p.P76P 0.55 TCGA-46-6026-01 19 35719440 35719440 C A FAM187B Silent p.G48G 0.44 TCGA-46-6026-01 19 38127106 38127106 A G ZFP30 Silent p.C112C 0.24 TCGA-46-6026-01 19 43575978 43575978 G A PSG2 Nonsense_Mutation p.Q280* 0.60 TCGA-46-6026-01 19 43576022 43576022 G C PSG2 Missense_Mutation p.S265C 0.55 deleterious(0.04) probably_damaging(0.999) TCGA-46-6026-01 19 45885788 45885788 G A PPP1R13L Silent p.F815F 0.63 TCGA-46-6026-01 19 50926910 50926910 G C SPIB Missense_Mutation p.E130Q 0.26 deleterious(0.01) probably_damaging(0.993) TCGA-46-6026-01 19 54234315 54234315 C T MIR518A1 RNA 0.32 TCGA-46-6026-01 19 54822833 54822833 T A LILRA5 Missense_Mutation p.Q188L 0.57 deleterious(0) benign(0.438) TCGA-46-6026-01 19 54845234 54845234 C T LILRA4 Missense_Mutation p.A420T 0.63 tolerated(0.3) benign(0.147) TCGA-46-6026-01 19 54963343 54963343 G A LENG8 Missense_Mutation p.E38K 0.24 deleterious(0.01) probably_damaging(0.993) TCGA-46-6026-01 19 55558804 55558804 C A RDH13 Silent p.L237L 0.57 TCGA-46-6026-01 19 58266005 58266005 C G ZNF776 Missense_Mutation p.L503V 0.45 deleterious(0) probably_damaging(0.937) TCGA-46-6026-01 19 58596227 58596227 C A ZSCAN18 Missense_Mutation p.S509I 0.46 deleterious(0) benign(0.194) TCGA-46-6026-01 19 9204149 9204149 A G OR1M1 Missense_Mutation p.T77A 0.17 deleterious(0.02) probably_damaging(0.993) TCGA-46-6026-01 1 151491775 151491775 C A CGN Silent p.L260L 0.25 TCGA-46-6026-01 1 152285018 152285018 G A FLG Missense_Mutation p.R782W 0.34 probably_damaging(0.973) TCGA-46-6026-01 1 152327320 152327320 G T FLG2 Nonsense_Mutation p.S981* 0.62 TCGA-46-6026-01 1 159846487 159846487 C T CCDC19 Missense_Mutation p.R404K 0.22 tolerated(0.16) benign(0.019) TCGA-46-6026-01 1 160098527 160098527 C T ATP1A2 Missense_Mutation p.T368M 0.18 deleterious(0) probably_damaging(0.999) TCGA-46-6026-01 1 16360250 16360250 C T CLCNKA 3'UTR 0.42 TCGA-46-6026-01 1 164761841 164761849 TCGGCGGCA - PBX1 In_Frame_Del p.S126_A128del 0.12 TCGA-46-6026-01 1 178427462 178427462 G A RASAL2 Missense_Mutation p.R1012Q 0.17 tolerated(0.13) benign(0.294) TCGA-46-6026-01 1 186024775 186024775 G T HMCN1 Missense_Mutation p.M2371I 0.51 probably_damaging(0.921) TCGA-46-6026-01 1 186276431 186276431 C G PRG4 Missense_Mutation p.T527S 0.56 unknown(0) TCGA-46-6026-01 1 197072366 197072366 C A ASPM Missense_Mutation p.R2005S 0.25 deleterious(0) probably_damaging(0.98) TCGA-46-6026-01 1 204957875 204957875 G A NFASC Missense_Mutation p.R903K 0.57 tolerated(0.88) benign(0.147) TCGA-46-6026-01 1 206760076 206760076 C A RASSF5 Intron 0.34 TCGA-46-6026-01 1 210522307 210522307 G T HHAT Intron 0.64 TCGA-46-6026-01 1 21934781 21934781 G T RAP1GAP Silent p.S471S 0.25 TCGA-46-6026-01 1 220213588 220213588 C A EPRS Missense_Mutation p.V24L 0.28 tolerated(0.28) benign(0.003) TCGA-46-6026-01 1 221912559 221912584 GTCAATGATGACAGGGCCCTGACTCG - DUSP10 Frame_Shift_Del p.P168Lfs*19 0.40 TCGA-46-6026-01 1 233507832 233507832 G A MLK4 Missense_Mutation p.R534Q 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-46-6026-01 1 234743230 234743230 C T IRF2BP2 Missense_Mutation p.E473K 0.28 tolerated(0.23) possibly_damaging(0.899) TCGA-46-6026-01 1 240656268 240656268 C T GREM2 3'UTR 0.43 TCGA-46-6026-01 1 247769333 247769333 G T OR2G3 Missense_Mutation p.W149L 0.27 deleterious(0) probably_damaging(1) TCGA-46-6026-01 1 248737725 248737725 G A OR2T34 Silent p.L112L 0.25 TCGA-46-6026-01 1 27608757 27608757 G T WDTC1 Nonsense_Mutation p.E54* 0.54 TCGA-46-6026-01 1 29362386 29362386 G T EPB41 Missense_Mutation p.A472S 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-46-6026-01 1 44595677 44595677 C A KLF17 Missense_Mutation p.S245Y 0.26 tolerated(0.36) possibly_damaging(0.646) TCGA-46-6026-01 1 53108671 53108671 G A FAM159A Missense_Mutation p.A107T 0.58 tolerated(1) benign(0.002) TCGA-46-6026-01 1 70486789 70486789 G A LRRC7 Missense_Mutation p.D470N 0.50 tolerated(0.08) benign(0.156) TCGA-46-6026-01 20 34501238 34501238 G A PHF20 Silent p.K543K 0.52 TCGA-46-6026-01 20 43355964 43355964 G T WISP2 3'UTR 0.41 TCGA-46-6026-01 20 50400992 50400992 T G SALL4 Missense_Mutation p.S992R 0.54 deleterious(0.03) benign(0.005) TCGA-46-6026-01 20 5294818 5294818 G A PROKR2 Silent p.V66V 0.55 TCGA-46-6026-01 20 62322277 62322277 G T RTEL1 Missense_Mutation p.A869S 0.40 tolerated(0.65) benign(0.005) TCGA-46-6026-01 21 10969127 10969127 G A TPTE Missense_Mutation p.P41S 0.08 tolerated(0.45) benign(0.002) TCGA-46-6026-01 22 30886088 30886088 G T SEC14L4 3'UTR 0.72 TCGA-46-6026-01 22 46930324 46930324 G C CELSR1 Missense_Mutation p.S915C 0.56 deleterious(0) probably_damaging(0.997) TCGA-46-6026-01 22 46930352 46930352 G A CELSR1 Missense_Mutation p.P906S 0.36 tolerated(0.1) probably_damaging(0.98) TCGA-46-6026-01 2 105473369 105473369 C A POU3F3 Silent p.P467P 0.71 TCGA-46-6026-01 2 118764334 118764334 A G CCDC93 Missense_Mutation p.L72S 0.21 deleterious(0) probably_damaging(0.998) TCGA-46-6026-01 2 130902495 130902495 C A CCDC74B Missense_Mutation p.Q25H 0.71 tolerated(0.15) possibly_damaging(0.693) TCGA-46-6026-01 2 152322531 152322531 A G RIF1 Missense_Mutation p.Q2166R 0.29 tolerated(0.1) benign(0.045) TCGA-46-6026-01 2 155099239 155099239 C T GALNT13 Silent p.Y169Y 0.27 TCGA-46-6026-01 2 176964967 176964967 G T HOXD12 Silent p.T146T 0.69 TCGA-46-6026-01 2 179365898 179365898 C G PLEKHA3 Missense_Mutation p.P257R 0.20 tolerated_low_confidence(0.17) benign(0.019) TCGA-46-6026-01 2 179471836 179471836 T A TTN Missense_Mutation p.Q17831H 0.22 TCGA-46-6026-01 2 203693855 203693855 C T ICA1L Intron 0.77 TCGA-46-6026-01 2 211471548 211471548 G A CPS1 Missense_Mutation p.G698D 0.60 deleterious(0) benign(0.082) TCGA-46-6026-01 2 217142400 217142400 C A MARCH4 Missense_Mutation p.C287F 0.31 deleterious(0) possibly_damaging(0.671) TCGA-46-6026-01 2 220329246 220329246 G A SPEG Missense_Mutation p.E933K 0.56 probably_damaging(0.93) TCGA-46-6026-01 2 223085987 223085987 C G PAX3 Silent p.T304T 0.72 TCGA-46-6026-01 2 225740851 225740851 C T DOCK10 Missense_Mutation p.D279N 0.23 tolerated(0.13) possibly_damaging(0.898) TCGA-46-6026-01 2 234104059 234104059 G T INPP5D Nonsense_Mutation p.E859* 0.64 TCGA-46-6026-01 2 40657410 40657410 A G SLC8A1 Missense_Mutation p.M4T 0.16 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-46-6026-01 2 42991386 42991386 G - OXER1 5'UTR 0.31 TCGA-46-6026-01 2 48848367 48848367 A G STON1-GTF2A1L Missense_Mutation p.Q766R 0.61 tolerated(0.21) benign(0.002) TCGA-46-6026-01 2 71209097 71209097 C A ANKRD53 Missense_Mutation p.L217M 0.11 tolerated(0.06) possibly_damaging(0.511) TCGA-46-6026-01 2 72359496 72359496 C A CYP26B1 Missense_Mutation p.A467S 0.21 tolerated(0.11) possibly_damaging(0.764) TCGA-46-6026-01 2 75278458 75278459 - T TACR1 Frame_Shift_Ins p.Q285Afs*26 0.41 TCGA-46-6026-01 3 108626788 108626788 C G GUCA1C 3'UTR 0.42 TCGA-46-6026-01 3 108818237 108818237 G C MORC1 Missense_Mutation p.Q131E 0.20 deleterious(0) probably_damaging(0.999) TCGA-46-6026-01 3 138724816 138724816 G C PRR23A Missense_Mutation p.L99V 0.17 tolerated(0.1) benign(0.259) TCGA-46-6026-01 3 138763105 138763105 C T PRR23C Missense_Mutation p.A120T 0.42 tolerated(0.56) benign(0.009) TCGA-46-6026-01 3 170802084 170802084 T C TNIK Missense_Mutation p.E1010G 0.56 deleterious(0.01) possibly_damaging(0.469) TCGA-46-6026-01 3 183209889 183209889 G A KLHL6 Silent p.G564G 0.12 TCGA-46-6026-01 3 184100816 184100816 G T CHRD Missense_Mutation p.A360S 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-46-6026-01 3 38307617 38307617 C T SLC22A13 Missense_Mutation p.P89L 0.73 deleterious(0.01) probably_damaging(0.989) TCGA-46-6026-01 3 46414943 46414943 T A CCR5 Missense_Mutation p.Y184N 0.86 tolerated(0.6) benign(0) TCGA-46-6026-01 3 47144879 47144879 C T SETD2 Missense_Mutation p.R1625H 0.80 deleterious(0) probably_damaging(0.961) TCGA-46-6026-01 3 52407054 52407054 G A DNAH1 Missense_Mutation p.D2324N 0.55 probably_damaging(0.927) TCGA-46-6026-01 3 86028400 86028400 C A CADM2 Missense_Mutation p.P346T 0.87 tolerated(0.26) benign(0) TCGA-46-6026-01 3 98002676 98002676 G C OR5H2 Nonstop_Mutation p.*315Yext*? 0.36 TCGA-46-6026-01 3 98251616 98251616 G A GPR15 Missense_Mutation p.V247M 0.19 deleterious(0) probably_damaging(1) TCGA-46-6026-01 4 123274300 123274300 C G KIAA1109 Missense_Mutation p.I4697M 0.36 possibly_damaging(0.812) TCGA-46-6026-01 4 141489864 141489864 G A UCP1 Missense_Mutation p.S7L 0.27 tolerated(0.1) benign(0.003) TCGA-46-6026-01 4 149075781 149075781 G A NR3C2 Silent p.A762A 0.04 TCGA-46-6026-01 4 153897750 153897750 G T FHDC1 Nonsense_Mutation p.E1103* 0.61 TCGA-46-6026-01 4 155507479 155507479 C T FGA Missense_Mutation p.G368R 0.55 deleterious_low_confidence(0.01) benign(0.097) TCGA-46-6026-01 4 187509794 187509794 T C FAT1 Silent p.E4573E 0.92 TCGA-46-6026-01 4 189060895 189060895 G C TRIML1 Missense_Mutation p.E61D 0.58 tolerated(0.14) benign(0.004) TCGA-46-6026-01 4 48887563 48887563 C A OCIAD2 Nonsense_Mutation p.E135* 0.57 TCGA-46-6026-01 4 55972048 55972048 C A KDR Silent p.A532A 0.20 TCGA-46-6026-01 4 56496629 56496629 T A NMU Splice_Site p.X38_splice 0.35 TCGA-46-6026-01 4 94376864 94376864 G A GRID2 Missense_Mutation p.V533M 0.57 deleterious(0) probably_damaging(0.997) TCGA-46-6026-01 5 108714199 108714199 T G PJA2 Missense_Mutation p.E330A 0.89 deleterious(0.01) possibly_damaging(0.571) TCGA-46-6026-01 5 115628151 115628151 G A COMMD10 Missense_Mutation p.E192K 0.79 tolerated(0.05) benign(0.301) TCGA-46-6026-01 5 127727716 127727716 C A FBN2 Missense_Mutation p.C533F 0.81 deleterious(0) probably_damaging(0.987) TCGA-46-6026-01 5 131008549 131008549 C A FNIP1 Missense_Mutation p.D530Y 0.75 deleterious(0) probably_damaging(0.945) TCGA-46-6026-01 5 145718768 145718768 G T POU4F3 Missense_Mutation p.M31I 0.80 tolerated(0.92) possibly_damaging(0.775) TCGA-46-6026-01 5 14610393 14610393 C T FAM105A Silent p.N347N 0.23 TCGA-46-6026-01 5 154330396 154330396 A T MRPL22 Silent p.S31S 0.80 TCGA-46-6026-01 5 159680366 159680366 C A CCNJL 3'UTR 0.88 TCGA-46-6026-01 5 16177969 16177969 G - MARCH11 Frame_Shift_Del p.R187Dfs*15 0.17 TCGA-46-6026-01 5 169472827 169472827 A C DOCK2 Missense_Mutation p.E1295A 0.79 deleterious(0) probably_damaging(0.998) TCGA-46-6026-01 5 171161 171161 G C PLEKHG4B Missense_Mutation p.E889Q 0.19 deleterious(0.01) probably_damaging(0.924) TCGA-46-6026-01 5 174156192 174156192 G T MSX2 Missense_Mutation p.R137M 0.31 deleterious(0) probably_damaging(0.999) TCGA-46-6026-01 5 176684105 176684105 G C NSD1 Missense_Mutation p.C1640S 0.79 deleterious(0) probably_damaging(0.999) TCGA-46-6026-01 5 21842439 21842439 T A CDH12 Splice_Site p.X216_splice 0.27 TCGA-46-6026-01 5 44388780 44388780 C G FGF10 Missense_Mutation p.W2S 0.17 tolerated(0.43) benign(0.023) TCGA-46-6026-01 5 45396653 45396653 C A HCN1 Missense_Mutation p.G391C 0.60 deleterious(0) probably_damaging(0.991) TCGA-46-6026-01 5 9380059 9380059 G T SEMA5A 5'UTR 0.18 TCGA-46-6026-01 6 129775399 129775399 G A LAMA2 Missense_Mutation p.D2225N 0.32 tolerated(0.48) benign(0.06) TCGA-46-6026-01 6 149691074 149691074 A G TAB2 5'UTR 0.27 TCGA-46-6026-01 6 26124133 26124133 C T HIST1H2BC 5'UTR 0.47 TCGA-46-6026-01 6 26271447 26271447 G A HIST1H3G Nonsense_Mutation p.Q56* 0.48 TCGA-46-6026-01 6 28402560 28402560 C A ZSCAN23 Silent p.R284R 0.70 TCGA-46-6026-01 6 29080187 29080187 C A OR2J3 Missense_Mutation p.H174N 0.53 tolerated(0.2) benign(0.011) TCGA-46-6026-01 6 32948622 32948622 G A BRD2 3'UTR 0.37 TCGA-46-6026-01 6 33424415 33424415 G A ZBTB9 3'UTR 0.21 TCGA-46-6026-01 6 41708268 41708268 G A PGC Missense_Mutation p.P243L 0.53 deleterious(0) probably_damaging(0.979) TCGA-46-6026-01 6 49928073 49928073 C G DEFB114 Missense_Mutation p.D48H 0.46 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-46-6026-01 6 52268797 52268797 C T PAQR8 Silent p.F262F 0.47 TCGA-46-6026-01 6 56350253 56350253 C T DST Missense_Mutation p.E4399K 0.35 probably_damaging(0.999) TCGA-46-6026-01 6 56497780 56497780 C T DST Missense_Mutation p.R689H 0.12 benign(0.016) TCGA-46-6026-01 6 74331542 74331542 C T SLC17A5 Silent p.R321R 0.34 TCGA-46-6026-01 6 79752705 79752705 G A PHIP Missense_Mutation p.S152L 0.49 deleterious(0.03) benign(0.054) TCGA-46-6026-01 6 84233341 84233342 GT - PRSS35 Frame_Shift_Del p.C62Wfs*15 0.30 TCGA-46-6026-01 7 100304454 100304454 A C POP7 Translation_Start_Site p.M1? 0.26 deleterious_low_confidence(0) possibly_damaging(0.456) TCGA-46-6026-01 7 100453423 100453423 G A SLC12A9 Missense_Mutation p.G138R 0.53 deleterious(0) probably_damaging(1) TCGA-46-6026-01 7 100807347 100807347 C T VGF Missense_Mutation p.E260K 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.885) TCGA-46-6026-01 7 120608024 120608024 A G ING3 Missense_Mutation p.N198S 0.61 tolerated(1) benign(0.001) TCGA-46-6026-01 7 136700855 136700855 C A CHRM2 Missense_Mutation p.P415T 0.60 tolerated(0.31) benign(0) TCGA-46-6026-01 7 143095862 143095862 C T EPHA1 Missense_Mutation p.V390M 0.43 deleterious(0.02) probably_damaging(0.916) TCGA-46-6026-01 7 143772025 143772025 C G OR2A25 Missense_Mutation p.S238C 0.29 deleterious(0) benign(0.35) TCGA-46-6026-01 7 149418023 149418023 C A KRBA1 Missense_Mutation p.D84E 0.56 tolerated(0.15) benign(0.189) TCGA-46-6026-01 7 150819972 150819972 G T AGAP3 Intron 0.50 TCGA-46-6026-01 7 154587594 154587594 G T DPP6 Splice_Site p.X433_splice 0.60 TCGA-46-6026-01 7 195587 195587 C G FAM20C Silent p.L213L 0.37 TCGA-46-6026-01 7 21584665 21584665 G A DNAH11 Silent p.K131K 0.67 TCGA-46-6026-01 7 2260523 2260523 T A MAD1L1 Intron 0.65 TCGA-46-6026-01 7 23018024 23018024 C A FAM126A Missense_Mutation p.S66I 0.69 deleterious(0) probably_damaging(0.986) TCGA-46-6026-01 7 37264527 37264527 C A ELMO1 Missense_Mutation p.A220S 0.72 tolerated(0.14) probably_damaging(0.999) TCGA-46-6026-01 7 39729980 39729980 G A RALA Splice_Site p.X39_splice 0.50 TCGA-46-6026-01 7 44228546 44228546 C A GCK Missense_Mutation p.D3Y 0.23 deleterious(0.03) benign(0.085) TCGA-46-6026-01 7 50121417 50121417 A T ZPBP Missense_Mutation p.I96K 0.61 deleterious(0) probably_damaging(0.966) TCGA-46-6026-01 7 72954383 72957877 7:72954383-72957877 - BCL7B large deletion p.X89_splice 0.12 TCGA-46-6026-01 7 73774519 73774519 C T CLIP2 Silent p.A410A 0.37 TCGA-46-6026-01 7 74103545 74103545 C T GTF2I Missense_Mutation p.S28L 0.18 deleterious(0) possibly_damaging(0.656) TCGA-46-6026-01 7 81643795 81643795 C A CACNA2D1 Missense_Mutation p.V382L 0.22 deleterious(0.02) probably_damaging(0.997) TCGA-46-6026-01 8 10480563 10480563 C T RP1L1 Missense_Mutation p.R50H 0.41 probably_damaging(0.992) TCGA-46-6026-01 8 11414226 11414226 C G BLK Missense_Mutation p.P278A 0.43 tolerated(0.15) benign(0.039) TCGA-46-6026-01 8 120633675 120633675 G C ENPP2 Missense_Mutation p.A126G 0.41 tolerated(0.09) benign(0.047) TCGA-46-6026-01 8 125562116 125562116 C T NDUFB9 Missense_Mutation p.R175W 0.43 deleterious_low_confidence(0.03) benign(0.049) TCGA-46-6026-01 8 145619352 145619352 T C CPSF1 Missense_Mutation p.M1279V 0.44 tolerated(0.63) benign(0.001) TCGA-46-6026-01 8 145748500 145748500 C G LRRC24 Missense_Mutation p.E301Q 0.35 tolerated(0.42) possibly_damaging(0.637) TCGA-46-6026-01 8 22107639 22107639 C T POLR3D Nonsense_Mutation p.Q325* 0.47 TCGA-46-6026-01 8 53092850 53092850 C A ST18 Missense_Mutation p.A37S 0.42 tolerated(0.07) benign(0.091) TCGA-46-6026-01 8 68178322 68178322 G A ARFGEF1 Missense_Mutation p.T681I 0.37 tolerated(0.17) benign(0.039) TCGA-46-6026-01 8 8873831 8873831 G T ERI1 Splice_Site p.X167_splice 0.45 TCGA-46-6026-01 8 95189937 95189937 G C CDH17 Missense_Mutation p.P55A 0.46 tolerated(0.11) benign(0.013) TCGA-46-6026-01 9 123908435 123908435 A T CNTRL Silent p.R1120R 0.95 TCGA-46-6026-01 9 130206596 130206596 C T ZNF79 Missense_Mutation p.S206F 0.42 deleterious(0.04) probably_damaging(0.942) TCGA-46-6026-01 9 20912887 20912887 T C FOCAD Missense_Mutation p.L914S 0.76 deleterious(0) possibly_damaging(0.529) TCGA-46-6026-01 9 86591925 86591925 C G HNRNPK Missense_Mutation p.K66N 0.79 tolerated(0.06) probably_damaging(0.999) TCGA-46-6026-01 9 86591934 86591934 C T HNRNPK Silent p.K63K 0.77 TCGA-46-6026-01 X 13778539 13778539 C T OFD1 Missense_Mutation p.R654W 0.88 deleterious(0.01) possibly_damaging(0.854) TCGA-46-6026-01 X 153594531 153594531 T C FLNA Silent p.V430V 0.92 TCGA-46-6026-01 X 40551537 40551537 C T MED14 Silent p.K626K 0.96 TCGA-46-6026-01 X 50341344 50341344 C A SHROOM4 Silent p.L1378L 0.94 TCGA-51-4079-01 10 100015331 100015331 C G LOXL4 Intron 0.52 TCGA-51-4079-01 10 25464821 25464821 C A GPR158 Missense_Mutation p.Q158K 0.27 deleterious(0.04) benign(0.094) TCGA-51-4079-01 10 30316850 30316850 G A KIAA1462 Nonsense_Mutation p.Q743* 0.30 TCGA-51-4079-01 10 31809552 31809552 A T ZEB1 Missense_Mutation p.E431V 0.40 deleterious(0.01) probably_damaging(0.998) TCGA-51-4079-01 10 43127796 43127796 C A ZNF33B Missense_Mutation p.R34M 0.28 deleterious(0) probably_damaging(0.936) TCGA-51-4079-01 10 62648494 62648494 C A RHOBTB1 Missense_Mutation p.C311F 0.36 tolerated(0.15) benign(0.094) TCGA-51-4079-01 10 95892039 95892039 G T PLCE1 Missense_Mutation p.G439C 0.35 deleterious_low_confidence(0) benign(0.013) TCGA-51-4079-01 11 108277675 108277675 C T C11orf65 Missense_Mutation p.D82N 0.38 tolerated(1) benign(0.003) TCGA-51-4079-01 11 123847781 123847781 G T OR10S1 Silent p.T206T 0.40 TCGA-51-4079-01 11 124761204 124761204 T G ROBO4 Missense_Mutation p.K647Q 0.40 tolerated(0.25) possibly_damaging(0.482) TCGA-51-4079-01 11 134229019 134229019 G A GLB1L2 Silent p.K239K 0.33 TCGA-51-4079-01 11 14793481 14793481 A G PDE3B Splice_Site p.X327_splice 0.26 TCGA-51-4079-01 11 17741695 17741695 G A MYOD1 Silent p.L122L 0.19 TCGA-51-4079-01 11 18735591 18735591 G T IGSF22 Missense_Mutation p.P635T 0.04 tolerated(0.1) possibly_damaging(0.543) TCGA-51-4079-01 11 19252207 19252207 G A E2F8 Missense_Mutation p.A414V 0.18 deleterious(0) probably_damaging(0.999) TCGA-51-4079-01 11 2591910 2591910 C A KCNQ1 Missense_Mutation p.S177Y 0.25 deleterious(0) probably_damaging(0.996) TCGA-51-4079-01 11 32956442 32956442 A G QSER1 Missense_Mutation p.E1084G 0.27 deleterious(0.02) benign(0.001) TCGA-51-4079-01 11 36512059 36512059 G T TRAF6 Missense_Mutation p.H300N 0.41 tolerated(0.2) benign(0.008) TCGA-51-4079-01 11 36596776 36596776 T G RAG1 Missense_Mutation p.V641G 0.14 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-51-4079-01 11 40136341 40136341 G T LRRC4C Missense_Mutation p.T501K 0.24 deleterious(0.02) possibly_damaging(0.552) TCGA-51-4079-01 11 40137090 40137090 T C LRRC4C Missense_Mutation p.I251M 0.25 tolerated(1) benign(0.001) TCGA-51-4079-01 11 4127316 4127316 G T RRM1 Missense_Mutation p.G50V 0.16 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-51-4079-01 11 43284411 43284411 C T HNRNPKP3 RNA 0.42 TCGA-51-4079-01 11 4389418 4389418 G C OR52B4 Silent p.S36S 0.37 TCGA-51-4079-01 11 4790942 4790942 G T OR51F1 Nonsense_Mutation p.S69* 0.21 TCGA-51-4079-01 11 48286057 48286057 C A OR4X1 Silent p.S215S 0.31 TCGA-51-4079-01 11 48328705 48328705 C T OR4S1 3'Flank 0.38 TCGA-51-4079-01 11 48510847 48510848 - C OR4A47 Frame_Shift_Ins p.N170Qfs*4 0.33 TCGA-51-4079-01 11 5255610 5255610 T G HBD Missense_Mutation p.K18N 0.18 deleterious(0.03) possibly_damaging(0.52) TCGA-51-4079-01 11 55681515 55681515 G T OR5W2 Missense_Mutation p.P182T 0.16 deleterious(0.03) possibly_damaging(0.484) TCGA-51-4079-01 11 55681783 55681783 T A OR5W2 Silent p.I92I 0.16 TCGA-51-4079-01 11 56085868 56085868 C A OR8K3 Missense_Mutation p.A29E 0.24 deleterious_low_confidence(0.03) benign(0.007) TCGA-51-4079-01 11 56468174 56468174 C T OR9G1 Missense_Mutation p.A104V 0.20 tolerated(0.55) benign(0.082) TCGA-51-4079-01 11 57156084 57156084 C A PRG2 Missense_Mutation p.G155V 0.16 deleterious(0.01) probably_damaging(0.979) TCGA-51-4079-01 11 57947182 57947182 G T OR9Q1 Missense_Mutation p.G89V 0.31 tolerated(0.08) probably_damaging(0.96) TCGA-51-4079-01 11 5862608 5862608 G A OR52E6 Missense_Mutation p.R174C 0.30 tolerated(0.06) benign(0.002) TCGA-51-4079-01 11 59190428 59190428 G T OR5A2 5'UTR 0.27 TCGA-51-4079-01 11 62432947 62432947 G A C11orf48 Intron 0.20 TCGA-51-4079-01 11 65811127 65811127 C G GAL3ST3 Missense_Mutation p.L49F 0.41 tolerated(0.26) benign(0.007) TCGA-51-4079-01 11 67220114 67220114 G - GPR152 Frame_Shift_Del p.Q28Kfs*22 0.38 TCGA-51-4079-01 11 67402568 67402568 C T TBX10 Silent p.K58K 0.25 TCGA-51-4079-01 11 68658761 68658761 A G MRPL21 3'UTR 0.30 TCGA-51-4079-01 11 7111477 7111477 G - RBMXL2 Frame_Shift_Del p.G376Efs*4 0.41 TCGA-51-4079-01 11 74904316 74904316 G T SLCO2B1 Missense_Mutation p.V377F 0.08 deleterious(0) probably_damaging(0.979) TCGA-51-4079-01 11 7982683 7982683 C A NLRP10 Missense_Mutation p.G159V 0.27 deleterious(0.02) possibly_damaging(0.736) TCGA-51-4079-01 11 8161675 8161675 C T RIC3 Missense_Mutation p.G64R 0.24 deleterious(0.02) probably_damaging(0.96) TCGA-51-4079-01 11 87847211 87847211 T C RAB38 Missense_Mutation p.K194R 0.33 tolerated(0.26) benign(0.002) TCGA-51-4079-01 11 89028313 89028313 C A TYR Missense_Mutation p.P457T 0.44 tolerated(0.19) benign(0.075) TCGA-51-4079-01 11 89177344 89177344 C T NOX4 Missense_Mutation p.E136K 0.44 tolerated(0.14) benign(0.03) TCGA-51-4079-01 11 9228258 9228258 C A DENND5A Missense_Mutation p.V85L 0.25 tolerated(0.1) benign(0.053) TCGA-51-4079-01 12 101738501 101738501 G C UTP20 Missense_Mutation p.L1526F 0.28 deleterious(0) possibly_damaging(0.675) TCGA-51-4079-01 12 103695805 103695805 C A C12orf42 3'UTR 0.20 TCGA-51-4079-01 12 104171701 104171701 G A NT5DC3 Missense_Mutation p.P518L 0.30 deleterious(0) probably_damaging(1) TCGA-51-4079-01 12 109530664 109530664 G A ALKBH2 5'UTR 0.32 TCGA-51-4079-01 12 10954981 10954981 T C TAS2R7 Silent p.L63L 0.35 TCGA-51-4079-01 12 111729337 111729337 C T CUX2 Silent p.P139P 0.25 TCGA-51-4079-01 12 112081988 112081988 C G BRAP 3'UTR 0.23 TCGA-51-4079-01 12 112888210 112888210 G A PTPN11 Missense_Mutation p.E76K 0.24 deleterious(0.01) probably_damaging(0.978) TCGA-51-4079-01 12 113534584 113534584 C A DTX1 Missense_Mutation p.T568N 0.20 deleterious(0) probably_damaging(0.997) TCGA-51-4079-01 12 11506160 11506160 G C PRB1 Missense_Mutation p.Q160E 0.23 deleterious_low_confidence(0) unknown(0) TCGA-51-4079-01 12 122676112 122676112 G A LRRC43 Missense_Mutation p.E363K 0.23 tolerated(0.08) probably_damaging(0.934) TCGA-51-4079-01 12 21200045 21200045 T A SLCO1B7 Silent p.I296I 0.26 TCGA-51-4079-01 12 21970196 21970196 C T ABCC9 Missense_Mutation p.E1273K 0.25 deleterious(0) possibly_damaging(0.74) TCGA-51-4079-01 12 27933843 27933843 C T KLHL42 Missense_Mutation p.P194S 0.37 tolerated(0.64) benign(0.058) TCGA-51-4079-01 12 4648093 4648093 C A RAD51AP1 5'UTR 0.28 TCGA-51-4079-01 12 48380931 48380931 C A COL2A1 Missense_Mutation p.G432V 0.27 unknown(0) TCGA-51-4079-01 12 51865250 51865250 T A SLC4A8 Missense_Mutation p.L613Q 0.22 deleterious(0.02) probably_damaging(1) TCGA-51-4079-01 12 53606961 53606961 C T RARG Missense_Mutation p.R362K 0.26 tolerated(1) benign(0.001) TCGA-51-4079-01 12 56994532 56994532 T A BAZ2A Missense_Mutation p.D1514V 0.26 deleterious(0) probably_damaging(0.972) TCGA-51-4079-01 12 57538835 57538835 G A LRP1 Missense_Mutation p.E177K 0.27 benign(0.336) TCGA-51-4079-01 12 57599412 57599412 A T LRP1 Missense_Mutation p.S3848C 0.32 possibly_damaging(0.711) TCGA-51-4079-01 12 58340811 58340811 A G XRCC6BP1 Silent p.E89E 0.32 TCGA-51-4079-01 12 66597554 66597554 A G IRAK3 Missense_Mutation p.K66R 0.18 tolerated(0.26) benign(0.335) TCGA-51-4079-01 12 6677105 6677105 T C NOP2 Intron 0.31 TCGA-51-4079-01 12 66932885 66932885 C G GRIP1 Missense_Mutation p.E131Q 0.32 deleterious(0.04) possibly_damaging(0.778) TCGA-51-4079-01 12 7640565 7640565 G A CD163 Silent p.S513S 0.20 TCGA-51-4079-01 12 80722884 80722884 G C OTOGL Missense_Mutation p.V1436L 0.24 tolerated(0.78) benign(0) TCGA-51-4079-01 13 113975735 113975735 G T LAMP1 Missense_Mutation p.R298L 0.37 tolerated(0.17) benign(0.036) TCGA-51-4079-01 13 26923311 26923311 G A CDK8 Missense_Mutation p.D103N 0.37 deleterious(0) probably_damaging(1) TCGA-51-4079-01 13 28542963 28542963 G A CDX2 Missense_Mutation p.P61S 0.44 tolerated(0.24) benign(0.424) TCGA-51-4079-01 13 47011905 47011905 A T PPP1R2P4 RNA 0.23 TCGA-51-4079-01 13 52639728 52639728 C A NEK5 Missense_Mutation p.V648L 0.38 tolerated(0.19) benign(0.001) TCGA-51-4079-01 13 67205442 67205442 G T PCDH9 Silent p.I1080I 0.45 TCGA-51-4079-01 13 70293566 70293566 A C KLHL1 Nonsense_Mutation p.Y650* 0.38 TCGA-51-4079-01 13 78492548 78492548 C T EDNRB Nonsense_Mutation p.W144* 0.37 TCGA-51-4079-01 13 97995296 97995296 A G MBNL2 Missense_Mutation p.I122M 0.26 tolerated(0.06) benign(0.019) TCGA-51-4079-01 14 106610818 106610818 G T IGHV3-15 5'UTR 0.16 TCGA-51-4079-01 14 106877769 106877769 C T IGHV4-39 Nonsense_Mutation p.W75* 0.13 TCGA-51-4079-01 14 19378146 19378146 G T OR11H12 Missense_Mutation p.G185C 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-51-4079-01 14 20295656 20295656 C A OR4N2 Missense_Mutation p.L17M 0.20 deleterious(0) probably_damaging(0.999) TCGA-51-4079-01 14 20295971 20295971 C A OR4N2 Missense_Mutation p.R122S 0.28 deleterious(0) possibly_damaging(0.738) TCGA-51-4079-01 14 20502384 20502385 - A OR4K13 Frame_Shift_Ins p.C179Lfs*2 0.23 TCGA-51-4079-01 14 20528917 20528917 C A OR4L1 Silent p.S238S 0.20 TCGA-51-4079-01 14 20528919 20528919 C A OR4L1 Missense_Mutation p.T239K 0.18 deleterious(0) probably_damaging(0.997) TCGA-51-4079-01 14 21860938 21860938 C A CHD8 Missense_Mutation p.V2167F 0.28 deleterious(0.02) benign(0.03) TCGA-51-4079-01 14 23902340 23902340 C A MYH7 Missense_Mutation p.A100S 0.30 tolerated(0.95) possibly_damaging(0.633) TCGA-51-4079-01 14 30135294 30135294 A T PRKD1 Missense_Mutation p.L175H 0.17 deleterious(0) probably_damaging(1) TCGA-51-4079-01 14 47324238 47324238 T C MDGA2 Missense_Mutation p.T958A 0.19 tolerated(0.39) benign(0.022) TCGA-51-4079-01 14 50856878 50856878 T C CDKL1 Intron 0.29 TCGA-51-4079-01 14 53619407 53619407 C G DDHD1 Missense_Mutation p.G137A 0.17 tolerated_low_confidence(0.41) benign(0.101) TCGA-51-4079-01 14 55655860 55655860 T A DLGAP5 Missense_Mutation p.D13V 0.16 deleterious(0) probably_damaging(0.96) TCGA-51-4079-01 14 56232964 56232964 G T RP11-813I20.2 Intron 0.43 TCGA-51-4079-01 14 65262276 65262276 C A SPTB Nonsense_Mutation p.E475* 0.16 TCGA-51-4079-01 14 92922883 92922883 C G SLC24A4 Missense_Mutation p.P396A 0.25 tolerated(0.76) benign(0) TCGA-51-4079-01 14 94582791 94582791 T G IFI27 Missense_Mutation p.L96R 0.26 deleterious(0) probably_damaging(0.928) TCGA-51-4079-01 14 96010432 96010432 A T GLRX5 Missense_Mutation p.L148F 0.43 deleterious(0.05) benign(0.053) TCGA-51-4079-01 15 20658993 20658993 A T HERC2P3 RNA 0.22 TCGA-51-4079-01 15 22382682 22382682 T A OR4N4 Missense_Mutation p.D70E 0.21 tolerated(0.09) possibly_damaging(0.694) TCGA-51-4079-01 15 28769090 28769090 A C GOLGA8G Missense_Mutation p.M469R 0.28 deleterious(0.03) benign(0.052) TCGA-51-4079-01 15 33822813 33822813 C A RYR3 Missense_Mutation p.H100Q 0.37 possibly_damaging(0.878) TCGA-51-4079-01 15 34049713 34049713 A T RYR3 Missense_Mutation p.H2874L 0.69 probably_damaging(0.999) TCGA-51-4079-01 15 54007484 54007484 A G WDR72 Silent p.D140D 0.26 TCGA-51-4079-01 15 55974607 55974607 C T PRTG Missense_Mutation p.A211T 0.34 deleterious(0.03) benign(0.062) TCGA-51-4079-01 15 64455064 64455064 T A PPIB Missense_Mutation p.K41I 0.22 deleterious(0.01) possibly_damaging(0.483) TCGA-51-4079-01 15 66792511 66792511 C T RPL4 Silent p.K307K 0.32 TCGA-51-4079-01 15 75500622 75500622 C A C15orf39 Missense_Mutation p.P745T 0.38 tolerated(0.33) possibly_damaging(0.803) TCGA-51-4079-01 15 78764103 78764103 G A IREB2 Silent p.K240K 0.31 TCGA-51-4079-01 15 82431031 82431031 C G EFTUD1 Missense_Mutation p.A1048P 0.31 deleterious(0) probably_damaging(1) TCGA-51-4079-01 15 89074069 89074069 G A DET1 Missense_Mutation p.P301S 0.19 tolerated(0.51) benign(0.016) TCGA-51-4079-01 16 19027774 19027774 A G TMC7 Missense_Mutation p.D105G 0.27 tolerated(0.05) benign(0.06) TCGA-51-4079-01 16 20335293 20335293 G T GP2 Missense_Mutation p.A127D 0.21 tolerated(0.11) benign(0.002) TCGA-51-4079-01 16 20442370 20442370 A T ACSM5 Missense_Mutation p.K394M 0.23 deleterious(0.02) possibly_damaging(0.497) TCGA-51-4079-01 16 21213451 21213451 G T ZP2 Missense_Mutation p.L421M 0.25 deleterious(0) probably_damaging(1) TCGA-51-4079-01 16 21270077 21270077 C T CRYM 3'UTR 0.26 TCGA-51-4079-01 16 28834535 28834535 C G ATXN2L 5'UTR 0.35 TCGA-51-4079-01 16 46615483 46615483 T A SHCBP1 3'UTR 0.36 TCGA-51-4079-01 16 597619 597619 G A CAPN15 Missense_Mutation p.E261K 0.20 tolerated_low_confidence(0.19) benign(0.141) TCGA-51-4079-01 16 61854938 61854938 A T CDH8 Silent p.I305I 0.29 TCGA-51-4079-01 16 68398689 68398689 A G SMPD3 Missense_Mutation p.V507A 0.23 deleterious(0) benign(0.142) TCGA-51-4079-01 16 69143722 69143722 G T HAS3 Missense_Mutation p.G142C 0.27 deleterious(0.02) probably_damaging(0.984) TCGA-51-4079-01 16 843154 843155 - C CHTF18 Frame_Shift_Ins p.R562Pfs*52 0.32 TCGA-51-4079-01 16 89351302 89351302 T C ANKRD11 Missense_Mutation p.N550D 0.41 possibly_damaging(0.899) TCGA-51-4079-01 16 89920893 89920893 A T SPIRE2 Splice_Site p.X243_splice 0.33 TCGA-51-4079-01 16 89920895 89920895 G T SPIRE2 Missense_Mutation p.A243S 0.31 deleterious(0) probably_damaging(0.926) TCGA-51-4079-01 16 89985821 89985821 G A MC1R Missense_Mutation p.S52N 0.38 deleterious(0) probably_damaging(0.945) TCGA-51-4079-01 17 17699777 17699777 G T RAI1 Missense_Mutation p.R1172L 0.23 deleterious(0.01) benign(0.26) TCGA-51-4079-01 17 18046882 18046882 G A MYO15A Silent p.L1971L 0.40 TCGA-51-4079-01 17 27009987 27009987 A G SUPT6H Silent p.L585L 0.21 TCGA-51-4079-01 17 34009759 34009759 G A AP2B1 Silent p.L790L 0.28 TCGA-51-4079-01 17 37672056 37672056 G A CDK12 Silent p.L947L 0.22 TCGA-51-4079-01 17 51901549 51901549 A T KIF2B Missense_Mutation p.Q385H 0.30 deleterious(0.03) benign(0.186) TCGA-51-4079-01 17 53798145 53798145 C A TMEM100 Missense_Mutation p.G96V 0.23 deleterious(0) probably_damaging(1) TCGA-51-4079-01 17 56584539 56584539 C A MTMR4 Silent p.G269G 0.12 TCGA-51-4079-01 17 61987339 61987339 T C CSHL1 Intron 0.31 TCGA-51-4079-01 17 62008692 62008692 G A CD79B Intron 0.17 TCGA-51-4079-01 17 62028792 62028792 C A SCN4A Missense_Mutation p.D949Y 0.26 tolerated(0.18) benign(0.278) TCGA-51-4079-01 17 6381393 6381393 C A PITPNM3 Missense_Mutation p.G268W 0.63 deleterious(0) probably_damaging(0.999) TCGA-51-4079-01 17 7579545 7579545 C - TP53 Frame_Shift_Del p.D48Tfs*75 0.41 TCGA-51-4079-01 18 12691384 12691384 A G CEP76 Missense_Mutation p.S303P 0.19 tolerated(0.07) benign(0.128) TCGA-51-4079-01 18 13645499 13645499 A T LDLRAD4 Missense_Mutation p.Y255F 0.34 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-51-4079-01 18 480715 480715 T A COLEC12 Missense_Mutation p.K17M 0.27 deleterious(0) benign(0.271) TCGA-51-4079-01 18 5428365 5428365 G C EPB41L3 Missense_Mutation p.L338V 0.34 deleterious(0) probably_damaging(0.949) TCGA-51-4079-01 18 63491899 63491899 C - CDH7 Frame_Shift_Del p.P272Qfs*6 0.30 TCGA-51-4079-01 18 67991834 67991834 G T SOCS6 5'UTR 0.40 TCGA-51-4079-01 19 1058927 1058927 G A ABCA7 Silent p.R1796R 0.32 TCGA-51-4079-01 19 11892417 11892417 G T ZNF441 Missense_Mutation p.G593V 0.28 deleterious(0) possibly_damaging(0.77) TCGA-51-4079-01 19 14561819 14561819 G A PKN1 Missense_Mutation p.E296K 0.39 tolerated(0.06) probably_damaging(0.958) TCGA-51-4079-01 19 15572072 15572072 G T RASAL3 Silent p.S167S 0.42 TCGA-51-4079-01 19 17339861 17339861 C G OCEL1 3'UTR 0.38 TCGA-51-4079-01 19 17370752 17370752 C A USHBP1 Missense_Mutation p.S241I 0.27 deleterious(0) probably_damaging(0.988) TCGA-51-4079-01 19 19339269 19339269 G C NCAN Missense_Mutation p.G947A 0.28 deleterious(0.02) probably_damaging(0.997) TCGA-51-4079-01 19 21512186 21512186 C T ZNF708 5'UTR 0.38 TCGA-51-4079-01 19 21588630 21588630 G T ZNF493 Missense_Mutation p.K75N 0.24 deleterious(0.03) possibly_damaging(0.881) TCGA-51-4079-01 19 22157058 22157058 C T ZNF208 Missense_Mutation p.E260K 0.24 tolerated(0.54) benign(0.212) TCGA-51-4079-01 19 22941148 22941148 G A ZNF99 Silent p.F521F 0.18 TCGA-51-4079-01 19 30934949 30934949 C A ZNF536 Nonsense_Mutation p.C160* 0.27 TCGA-51-4079-01 19 33167279 33167279 G - RGS9BP Frame_Shift_Del p.Q38Rfs*21 0.38 TCGA-51-4079-01 19 34890129 34890129 C T GPI Silent p.F440F 0.18 TCGA-51-4079-01 19 36279138 36279138 G A ARHGAP33 Missense_Mutation p.G1063D 0.33 deleterious_low_confidence(0.01) benign(0.176) TCGA-51-4079-01 19 37211000 37211000 C T ZNF567 Silent p.F427F 0.32 TCGA-51-4079-01 19 3959147 3959147 G A DAPK3 Silent p.R439R 0.40 TCGA-51-4079-01 19 39691461 39691461 T G NCCRP1 3'UTR 0.31 TCGA-51-4079-01 19 40331140 40331140 G C FBL Missense_Mutation p.S66C 0.25 deleterious(0.04) unknown(0) TCGA-51-4079-01 19 40581487 40581487 G A ZNF780A Missense_Mutation p.R289C 0.23 tolerated(0.19) benign(0.136) TCGA-51-4079-01 19 40964289 40964289 G A BLVRB Silent p.L81L 0.38 TCGA-51-4079-01 19 41627463 41627463 G T CYP2F1 Silent p.L195L 0.28 TCGA-51-4079-01 19 46334680 46334680 C A SYMPK Missense_Mutation p.K520N 0.19 tolerated(0.06) benign(0.018) TCGA-51-4079-01 19 48283985 48283985 C T SEPW1 Silent p.G11G 0.55 TCGA-51-4079-01 19 5077469 5077469 C T KDM4B Silent p.I256I 0.38 TCGA-51-4079-01 19 50926104 50926104 C - SPIB Frame_Shift_Del p.P51Hfs*129 0.28 TCGA-51-4079-01 19 52723448 52723448 G A PPP2R1A Missense_Mutation p.E437K 0.26 tolerated(0.4) benign(0.036) TCGA-51-4079-01 19 54312869 54312869 C T NLRP12 Missense_Mutation p.A682T 0.27 tolerated(0.52) benign(0.003) TCGA-51-4079-01 19 54696028 54696028 C A TSEN34 Silent p.L183L 0.25 TCGA-51-4079-01 19 54742961 54742961 T C LILRA6 Silent p.S438S 0.09 TCGA-51-4079-01 19 54974005 54974005 G A LENG9 Silent p.A257A 0.32 TCGA-51-4079-01 19 55711650 55711650 T G PTPRH Missense_Mutation p.E458D 0.31 possibly_damaging(0.752) TCGA-51-4079-01 19 56109044 56109044 C A FIZ1 Missense_Mutation p.S63I 0.34 deleterious(0) unknown(0) TCGA-51-4079-01 19 57640425 57640425 G T USP29 Nonsense_Mutation p.E128* 0.23 TCGA-51-4079-01 19 57802178 57802179 - G ZNF460 Frame_Shift_Ins p.Q92Afs*10 0.20 TCGA-51-4079-01 19 57932017 57932017 A T ZNF17 Missense_Mutation p.Y386F 0.24 tolerated(0.24) benign(0.004) TCGA-51-4079-01 19 7076407 7076407 G C ZNF557 Missense_Mutation p.E46Q 0.39 tolerated(0.34) possibly_damaging(0.859) TCGA-51-4079-01 19 8154510 8154510 C A FBN3 Missense_Mutation p.V2099F 0.30 tolerated(0.43) benign(0.015) TCGA-51-4079-01 19 9024995 9024995 G C MUC16 Silent p.P12289P 0.22 TCGA-51-4079-01 1 11734801 11734801 T G MAD2L2 3'UTR 0.34 TCGA-51-4079-01 1 119962145 119962145 T C HSD3B2 Missense_Mutation p.C83R 0.31 deleterious(0.01) benign(0.255) TCGA-51-4079-01 1 12091849 12091849 C T MIIP Missense_Mutation p.P384L 0.35 tolerated(0.26) unknown(0) TCGA-51-4079-01 1 13448327 13448327 T A PRAMEF13 Missense_Mutation p.Y383F 0.42 deleterious(0.03) possibly_damaging(0.69) TCGA-51-4079-01 1 154988739 154988739 C T ZBTB7B Missense_Mutation p.R434C 0.10 deleterious(0) probably_damaging(0.992) TCGA-51-4079-01 1 155205560 155205560 G A GBA Missense_Mutation p.R434C 0.13 deleterious(0) possibly_damaging(0.823) TCGA-51-4079-01 1 158151294 158151294 C T CD1D Silent p.A37A 0.09 TCGA-51-4079-01 1 158368351 158368351 T A OR10T2 Missense_Mutation p.K302N 0.46 deleterious(0.04) benign(0.103) TCGA-51-4079-01 1 158450191 158450191 C A OR10R2 Missense_Mutation p.A175D 0.07 deleterious(0) benign(0.374) TCGA-51-4079-01 1 159284164 159284164 G T OR10J3 Missense_Mutation p.Q96K 0.20 tolerated(0.36) benign(0.041) TCGA-51-4079-01 1 160264286 160264286 G A COPA Silent p.L897L 0.54 TCGA-51-4079-01 1 160264287 160264287 A G COPA Missense_Mutation p.L897P 0.54 tolerated(0.06) possibly_damaging(0.715) TCGA-51-4079-01 1 16065985 16065985 G T SLC25A34 3'UTR 0.53 TCGA-51-4079-01 1 160970099 160970099 G A F11R Missense_Mutation p.A143V 0.06 tolerated(0.66) benign(0.009) TCGA-51-4079-01 1 169670785 169670785 G T SELL Missense_Mutation p.P346T 0.19 deleterious(0.01) probably_damaging(0.989) TCGA-51-4079-01 1 169985706 169985706 C T KIFAP3 Silent p.L360L 0.20 TCGA-51-4079-01 1 171073021 171073021 T C FMO3 Silent p.D76D 0.23 TCGA-51-4079-01 1 173019911 173019911 A T TNFSF18 Missense_Mutation p.S64R 0.74 tolerated(0.17) possibly_damaging(0.656) TCGA-51-4079-01 1 174417424 174417424 C T GPR52 Silent p.L59L 0.07 TCGA-51-4079-01 1 176915087 176915087 C A ASTN1 Nonsense_Mutation p.G742* 0.40 TCGA-51-4079-01 1 177913779 177913779 T C SEC16B Missense_Mutation p.T600A 0.27 tolerated(0.13) benign(0.119) TCGA-51-4079-01 1 182355396 182355396 G A GLUL Missense_Mutation p.P157L 0.34 deleterious(0.04) possibly_damaging(0.512) TCGA-51-4079-01 1 184663433 184663433 C T EDEM3 Missense_Mutation p.A855T 0.21 tolerated_low_confidence(0.39) benign(0.002) TCGA-51-4079-01 1 190068169 190068169 G T BRINP3 Missense_Mutation p.T427K 0.21 deleterious(0.01) benign(0.044) TCGA-51-4079-01 1 201860556 201860556 C T SHISA4 Missense_Mutation p.P136L 0.20 tolerated(0.06) probably_damaging(0.975) TCGA-51-4079-01 1 20412684 20412684 G A PLA2G5 Nonsense_Mutation p.W50* 0.37 TCGA-51-4079-01 1 206566134 206566134 T C SRGAP2 Missense_Mutation p.I106T 0.32 tolerated(0.58) benign(0.036) TCGA-51-4079-01 1 216138713 216138713 T A USH2A Missense_Mutation p.N2356Y 0.34 probably_damaging(0.925) TCGA-51-4079-01 1 216258076 216258076 C T USH2A Missense_Mutation p.A1711T 0.17 benign(0.001) TCGA-51-4079-01 1 220366599 220366599 G A RAB3GAP2 Missense_Mutation p.A418V 0.17 deleterious(0) benign(0.12) TCGA-51-4079-01 1 222885580 222885580 T C AIDA Missense_Mutation p.Q27R 0.23 deleterious(0) possibly_damaging(0.895) TCGA-51-4079-01 1 225598073 225598073 C A LBR Missense_Mutation p.D412Y 0.13 deleterious(0.02) benign(0.155) TCGA-51-4079-01 1 232564213 232564213 C G SIPA1L2 Missense_Mutation p.D1452H 0.27 deleterious(0) probably_damaging(0.948) TCGA-51-4079-01 1 247769289 247769289 C A OR2G3 Silent p.V134V 0.17 TCGA-51-4079-01 1 247769804 247769804 C A OR2G3 Nonsense_Mutation p.S306* 0.41 TCGA-51-4079-01 1 247902231 247902231 G T OR14K1 Silent p.L105L 0.13 TCGA-51-4079-01 1 248367217 248367217 C T OR2M3 Missense_Mutation p.P283L 0.30 deleterious(0.01) probably_damaging(0.99) TCGA-51-4079-01 1 248570379 248570379 C - OR2T1 Frame_Shift_Del p.Q362Kfs*? 0.30 TCGA-51-4079-01 1 248636883 248636883 T C OR2T3 Missense_Mutation p.Y78H 0.17 tolerated(0.06) benign(0.018) TCGA-51-4079-01 1 28906893 28906893 C T TRNAU1AP 3'Flank 0.50 TCGA-51-4079-01 1 28907115 28907115 C G TRNAU1AP 3'Flank 0.63 TCGA-51-4079-01 1 28907156 28907156 C T TRNAU1AP 3'Flank 0.56 TCGA-51-4079-01 1 32687602 32687602 C T TMEM234 Missense_Mutation p.V12M 0.35 deleterious(0.02) unknown(0) TCGA-51-4079-01 1 37291414 37291414 G T GRIK3 Missense_Mutation p.A515D 0.20 deleterious(0) probably_damaging(0.992) TCGA-51-4079-01 1 38265828 38265828 C T MANEAL Missense_Mutation p.R443C 0.24 deleterious(0) benign(0.019) TCGA-51-4079-01 1 41579063 41579063 C G SCMH1 Missense_Mutation p.G203R 0.22 deleterious(0) probably_damaging(1) TCGA-51-4079-01 1 49100272 49100272 A T AGBL4 Missense_Mutation p.S282T 0.27 tolerated(0.3) probably_damaging(0.977) TCGA-51-4079-01 1 57383376 57383376 C A C8A Missense_Mutation p.T581K 0.33 deleterious(0) possibly_damaging(0.57) TCGA-51-4079-01 1 65855118 65855118 C T DNAJC6 Missense_Mutation p.T458M 0.25 tolerated(0.1) probably_damaging(0.942) TCGA-51-4079-01 1 66067630 66067630 T A LEPR Missense_Mutation p.L464M 0.29 deleterious(0.03) possibly_damaging(0.476) TCGA-51-4079-01 1 67804309 67804309 C T IL12RB2 Missense_Mutation p.P321S 0.27 deleterious(0) probably_damaging(1) TCGA-51-4079-01 1 75037023 75037023 T A C1orf173 Silent p.A1457A 0.28 TCGA-51-4079-01 1 75038490 75038490 G A C1orf173 Silent p.D968D 0.29 TCGA-51-4079-01 1 78162895 78162895 T C USP33 3'UTR 0.31 TCGA-51-4079-01 1 86142970 86142970 G A ZNHIT6 Missense_Mutation p.T399I 0.26 deleterious(0.02) possibly_damaging(0.536) TCGA-51-4079-01 1 91177965 91177965 C A BARHL2 Silent p.L356L 0.24 TCGA-51-4079-01 1 92182160 92182160 C T TGFBR3 Missense_Mutation p.D558N 0.27 tolerated(0.14) possibly_damaging(0.827) TCGA-51-4079-01 20 18139799 18139799 C T CSRP2BP Missense_Mutation p.S191L 0.22 deleterious(0) probably_damaging(0.998) TCGA-51-4079-01 20 30156010 30156010 G C HM13 Silent p.P388P 0.36 TCGA-51-4079-01 20 3215403 3215403 G C SLC4A11 Missense_Mutation p.Q119E 0.28 tolerated(0.11) possibly_damaging(0.519) TCGA-51-4079-01 20 42225085 42225085 G A IFT52 Missense_Mutation p.E44K 0.28 tolerated(0.05) possibly_damaging(0.474) TCGA-51-4079-01 20 43545460 43545460 G T PABPC1L Missense_Mutation p.A151S 0.28 deleterious(0.02) possibly_damaging(0.857) TCGA-51-4079-01 20 43726500 43726500 G A KCNS1 Missense_Mutation p.L305F 0.32 deleterious(0) probably_damaging(1) TCGA-51-4079-01 20 44483888 44483888 G C ACOT8 Missense_Mutation p.Q58E 0.21 deleterious(0) probably_damaging(0.999) TCGA-51-4079-01 20 44596814 44596814 G C ZNF335 Intron 0.36 TCGA-51-4079-01 20 50273590 50273590 G C ATP9A Missense_Mutation p.L465V 0.22 deleterious(0.05) benign(0.319) TCGA-51-4079-01 20 57594462 57594462 C A TUBB1 5'UTR 0.38 TCGA-51-4079-01 20 57766527 57766527 C A ZNF831 Silent p.R151R 0.25 TCGA-51-4079-01 21 10998209 10998209 G T TPTE Intron 0.13 TCGA-51-4079-01 21 15884785 15884785 T C SAMSN1 Missense_Mutation p.Y198C 0.27 deleterious(0.01) probably_damaging(1) TCGA-51-4079-01 21 31802948 31802948 G C KRTAP13-4 Missense_Mutation p.G119R 0.27 tolerated(0.07) possibly_damaging(0.652) TCGA-51-4079-01 21 33032075 33032075 A T SOD1 5'UTR 0.34 TCGA-51-4079-01 21 46011633 46011633 C G KRTAP10-6 Missense_Mutation p.E245Q 0.25 tolerated(0.49) unknown(0) TCGA-51-4079-01 22 22064998 22064998 C T YPEL1 Silent p.A12A 0.20 TCGA-51-4079-01 22 32506253 32506253 T C SLC5A1 3'UTR 0.31 TCGA-51-4079-01 22 35943073 35943073 G T RASD2 Missense_Mutation p.D73Y 0.20 deleterious(0) probably_damaging(1) TCGA-51-4079-01 22 36164352 36164352 C A RBFOX2 Missense_Mutation p.R236S 0.28 possibly_damaging(0.458) TCGA-51-4079-01 22 41753294 41753294 A T ZC3H7B Missense_Mutation p.K932M 0.21 deleterious(0) probably_damaging(0.999) TCGA-51-4079-01 2 101581391 101581391 A C NPAS2 Missense_Mutation p.L262F 0.24 deleterious(0) probably_damaging(1) TCGA-51-4079-01 2 112541942 112541942 C A ANAPC1 Missense_Mutation p.L1651F 0.09 deleterious(0.01) benign(0.372) TCGA-51-4079-01 2 128471306 128471306 C A WDR33 Silent p.P1053P 0.29 TCGA-51-4079-01 2 131487666 131487666 C T GPR148 Silent p.A314A 0.36 TCGA-51-4079-01 2 138758497 138758504 ATCTTCAA - HNMT Frame_Shift_Del p.L68Sfs*16 0.32 TCGA-51-4079-01 2 143913212 143913212 G A ARHGAP15 Silent p.K51K 0.22 TCGA-51-4079-01 2 157182456 157182456 T G NR4A2 Missense_Mutation p.N533H 0.29 deleterious(0.01) possibly_damaging(0.891) TCGA-51-4079-01 2 160335124 160335124 G C BAZ2B Missense_Mutation p.T36S 0.04 benign(0.292) TCGA-51-4079-01 2 163369169 163369169 A T KCNH7 Missense_Mutation p.V303D 0.19 tolerated(0.63) benign(0.126) TCGA-51-4079-01 2 163693138 163693138 G A KCNH7 Silent p.P72P 0.23 TCGA-51-4079-01 2 168105878 168105878 T G XIRP2 Missense_Mutation p.V2659G 0.05 benign(0.019) TCGA-51-4079-01 2 168107114 168107114 A G XIRP2 Missense_Mutation p.E3071G 0.23 possibly_damaging(0.888) TCGA-51-4079-01 2 168114392 168114392 G T XIRP2 3'UTR 0.17 TCGA-51-4079-01 2 168114393 168114393 G T XIRP2 3'UTR 0.16 TCGA-51-4079-01 2 168114796 168114796 G T XIRP2 3'UTR 0.25 TCGA-51-4079-01 2 168725375 168725375 T G B3GALT1 5'Flank 0.36 TCGA-51-4079-01 2 171573769 171573769 C A SP5 Missense_Mutation p.T351K 0.28 deleterious(0) possibly_damaging(0.832) TCGA-51-4079-01 2 176983792 176983792 T A HOXD10 Missense_Mutation p.L286M 0.30 deleterious(0) probably_damaging(0.999) TCGA-51-4079-01 2 177036654 177036654 G T HOXD3 Silent p.A317A 0.30 TCGA-51-4079-01 2 178098803 178098803 C A NFE2L2 Missense_Mutation p.G81V 0.34 deleterious(0) probably_damaging(1) TCGA-51-4079-01 2 179253830 179253830 A T OSBPL6 Missense_Mutation p.I776F 0.30 deleterious(0) benign(0.315) TCGA-51-4079-01 2 179589011 179589011 A - TTN Frame_Shift_Del p.C7031Afs*20 0.28 TCGA-51-4079-01 2 179615909 179615909 C G TTN Intron 0.30 TCGA-51-4079-01 2 179616722 179616722 G T TTN Intron 0.25 TCGA-51-4079-01 2 179623731 179623731 G A TTN Missense_Mutation p.T3428I 0.32 TCGA-51-4079-01 2 179636016 179636016 C A TTN Missense_Mutation p.A2680S 0.22 TCGA-51-4079-01 2 180309691 180309691 C T ZNF385B Missense_Mutation p.R370Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-51-4079-01 2 189875023 189875023 T A COL3A1 Missense_Mutation p.W1315R 0.31 unknown(0) TCGA-51-4079-01 2 198948716 198948716 G T PLCL1 Missense_Mutation p.D159Y 0.25 deleterious(0.01) benign(0.379) TCGA-51-4079-01 2 200298113 200298113 C A SATB2 Missense_Mutation p.E98D 0.23 tolerated(0.05) probably_damaging(0.965) TCGA-51-4079-01 2 202027781 202027781 G A CFLAR Intron 0.20 TCGA-51-4079-01 2 207412165 207412165 C T ADAM23 Nonsense_Mutation p.R245* 0.18 TCGA-51-4079-01 2 211299258 211299258 C A LANCL1 Missense_Mutation p.D385Y 0.28 deleterious(0) probably_damaging(1) TCGA-51-4079-01 2 211464182 211464182 C G CPS1 Silent p.V488V 0.25 TCGA-51-4079-01 2 21228378 21228378 C T APOB Missense_Mutation p.E3788K 0.24 benign(0) TCGA-51-4079-01 2 227662963 227662963 C A IRS1 Missense_Mutation p.W164C 0.31 deleterious(0) probably_damaging(1) TCGA-51-4079-01 2 227662964 227662964 C A IRS1 Missense_Mutation p.W164L 0.31 deleterious(0) probably_damaging(1) TCGA-51-4079-01 2 228883285 228883285 C A SPHKAP Missense_Mutation p.W762L 0.28 tolerated(0.73) benign(0.005) TCGA-51-4079-01 2 231775273 231775273 G T GPR55 Silent p.P135P 0.29 TCGA-51-4079-01 2 241496722 241496722 C G ANKMY1 5'UTR 0.20 TCGA-51-4079-01 2 241987751 241987751 C T SNED1 Silent p.D431D 0.15 TCGA-51-4079-01 2 24239810 24239810 T A MFSD2B Missense_Mutation p.F148Y 0.24 deleterious(0) possibly_damaging(0.901) TCGA-51-4079-01 2 27804711 27804711 C A C2orf16 Missense_Mutation p.H1758N 0.15 tolerated(0.33) possibly_damaging(0.775) TCGA-51-4079-01 2 31565125 31565125 C A XDH Missense_Mutation p.G1148V 0.29 deleterious(0.01) probably_damaging(1) TCGA-51-4079-01 2 33749082 33749082 G T RASGRP3 Missense_Mutation p.R218M 0.27 deleterious(0) probably_damaging(0.999) TCGA-51-4079-01 2 38604324 38604324 T G ATL2 Missense_Mutation p.S27R 0.31 tolerated_low_confidence(0.5) benign(0.001) TCGA-51-4079-01 2 42936085 42936085 A G MTA3 Silent p.P458P 0.30 TCGA-51-4079-01 2 46803780 46803780 G A RHOQ Silent p.Q149Q 0.31 TCGA-51-4079-01 2 48915006 48915006 A C LHCGR Missense_Mutation p.C644G 0.30 deleterious(0) probably_damaging(0.991) TCGA-51-4079-01 2 48915786 48915786 G T LHCGR Missense_Mutation p.L384I 0.32 deleterious(0.04) possibly_damaging(0.773) TCGA-51-4079-01 2 54112848 54112848 C G PSME4 Missense_Mutation p.Q1598H 0.30 tolerated(0.08) benign(0.014) TCGA-51-4079-01 2 60687991 60687991 A C BCL11A Missense_Mutation p.S686A 0.18 tolerated(0.08) benign(0.076) TCGA-51-4079-01 2 61633028 61633028 C T USP34 Missense_Mutation p.E123K 0.19 tolerated(0.39) benign(0.012) TCGA-51-4079-01 2 62450499 62450499 G C B3GNT2 Missense_Mutation p.E382Q 0.04 tolerated(0.08) probably_damaging(0.992) TCGA-51-4079-01 2 65469172 65469172 C T ACTR2 Intron 0.16 TCGA-51-4079-01 2 71747932 71747932 C T DYSF Silent p.L349L 0.20 TCGA-51-4079-01 2 73118645 73118645 C T SPR Silent p.H255H 0.24 TCGA-51-4079-01 2 79385532 79385532 C A REG3A Nonsense_Mutation p.G85* 0.24 TCGA-51-4079-01 2 79385579 79385579 T C REG3A Missense_Mutation p.Q69R 0.24 deleterious(0.02) possibly_damaging(0.896) TCGA-51-4079-01 2 79385871 79385871 G C REG3A Missense_Mutation p.P34R 0.14 tolerated(0.06) benign(0.01) TCGA-51-4079-01 2 88056480 88056480 T C PLGLB2 3'UTR 0.17 TCGA-51-4079-01 2 88472876 88472876 A G THNSL2 Silent p.P69P 0.34 TCGA-51-4079-01 2 89309744 89309744 G C IGKV1-9 Missense_Mutation p.S29C 0.14 deleterious(0) probably_damaging(0.953) TCGA-51-4079-01 2 95537339 95537339 G T TEKT4 Silent p.V5V 0.22 TCGA-51-4079-01 2 95770428 95770428 C A MRPS5 Silent p.S240S 0.20 TCGA-51-4079-01 2 97361286 97361286 C A FER1L5 RNA 0.35 TCGA-51-4079-01 2 98388811 98388812 - T TMEM131 Frame_Shift_Ins p.S1466Kfs*8 0.19 TCGA-51-4079-01 3 100373875 100373875 T A GPR128 Missense_Mutation p.C526S 0.48 deleterious(0) probably_damaging(1) TCGA-51-4079-01 3 100570766 100570766 G C ABI3BP Nonsense_Mutation p.S393* 0.14 TCGA-51-4079-01 3 108475936 108475936 T A RETNLB Nonsense_Mutation p.K33* 0.14 TCGA-51-4079-01 3 108725881 108725881 G T MORC1 Missense_Mutation p.H588N 0.09 tolerated(0.17) benign(0) TCGA-51-4079-01 3 118948774 118948774 C A B4GALT4 Missense_Mutation p.G58V 0.18 tolerated(0.07) benign(0.221) TCGA-51-4079-01 3 121206414 121206414 C A POLQ Silent p.G1788G 0.13 TCGA-51-4079-01 3 127323596 127323596 C T MCM2 Silent p.L128L 0.12 TCGA-51-4079-01 3 132322143 132322143 C A ACAD11 Silent p.T517T 0.13 TCGA-51-4079-01 3 133339143 133339143 T A TOPBP1 Missense_Mutation p.Q1076L 0.09 deleterious(0) probably_damaging(0.987) TCGA-51-4079-01 3 142499767 142499767 C G TRPC1 Missense_Mutation p.L286V 0.23 deleterious(0) probably_damaging(0.99) TCGA-51-4079-01 3 148749901 148749901 C A HLTF 3'UTR 0.36 TCGA-51-4079-01 3 150460253 150460253 T C SIAH2 Missense_Mutation p.D217G 0.05 deleterious(0) probably_damaging(0.921) TCGA-51-4079-01 3 153973325 153973325 G C ARHGEF26 3'UTR 0.16 TCGA-51-4079-01 3 154884812 154884812 T A MME Splice_Site p.X594_splice 0.16 TCGA-51-4079-01 3 158409239 158409239 G T GFM1 Nonsense_Mutation p.G747* 0.06 TCGA-51-4079-01 3 158787230 158787230 G A IQCJ Silent p.L3L 0.55 TCGA-51-4079-01 3 158983042 158983042 C A IQCJ Silent p.I110I 0.18 TCGA-51-4079-01 3 164905727 164905727 C A SLITRK3 Silent p.P964P 0.08 TCGA-51-4079-01 3 165547376 165547376 A T BCHE Missense_Mutation p.D482E 0.17 tolerated(0.05) benign(0) TCGA-51-4079-01 3 167159837 167159837 T C SERPINI2 3'UTR 0.18 TCGA-51-4079-01 3 173322456 173322456 G T NLGN1 Missense_Mutation p.R23L 0.24 tolerated_low_confidence(0.77) benign(0) TCGA-51-4079-01 3 173322457 173322457 G T NLGN1 Silent p.R23R 0.24 TCGA-51-4079-01 3 173525487 173525487 G C NLGN1 Missense_Mutation p.G171R 0.09 tolerated(0.43) benign(0.346) TCGA-51-4079-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.21 deleterious(0.02) probably_damaging(0.959) TCGA-51-4079-01 3 180327373 180327373 A T TTC14 Intron 0.29 TCGA-51-4079-01 3 180381711 180381711 T A CCDC39 Missense_Mutation p.I52F 0.34 deleterious(0) possibly_damaging(0.8) TCGA-51-4079-01 3 182987916 182987916 G A B3GNT5 Silent p.T110T 0.05 TCGA-51-4079-01 3 185190873 185190873 G A MAP3K13 Missense_Mutation p.R585Q 0.16 deleterious(0.03) probably_damaging(0.997) TCGA-51-4079-01 3 185986661 185986661 C A DGKG Missense_Mutation p.D349Y 0.36 deleterious(0) probably_damaging(0.992) TCGA-51-4079-01 3 192980981 192980981 A G HRASLS Missense_Mutation p.H226R 0.62 deleterious(0.01) probably_damaging(0.999) TCGA-51-4079-01 3 194407853 194407853 A T FAM43A Missense_Mutation p.S100C 0.14 tolerated(0.12) probably_damaging(0.998) TCGA-51-4079-01 3 30713591 30713591 C T TGFBR2 Nonsense_Mutation p.Q331* 0.43 TCGA-51-4079-01 3 39184967 39184967 G A CSRNP1 Missense_Mutation p.T450I 0.49 tolerated(0.57) benign(0.02) TCGA-51-4079-01 3 39230980 39230980 C A XIRP1 5'UTR 0.38 TCGA-51-4079-01 3 97868527 97868527 C A OR5H14 Missense_Mutation p.Q100K 0.11 deleterious(0.01) possibly_damaging(0.858) TCGA-51-4079-01 3 98189243 98189243 G A OR5K1 Missense_Mutation p.A275T 0.38 deleterious(0.01) possibly_damaging(0.866) TCGA-51-4079-01 3 99649846 99649846 C T FILIP1L Missense_Mutation p.D7N 0.17 tolerated(0.76) benign(0.001) TCGA-51-4079-01 4 126355562 126355562 C T FAT4 Missense_Mutation p.S2394L 0.36 benign(0.155) TCGA-51-4079-01 4 15591297 15591297 G C CC2D2A Missense_Mutation p.D1437H 0.24 deleterious(0) benign(0.406) TCGA-51-4079-01 4 164534651 164534651 G C MARCH1 Intron 0.33 TCGA-51-4079-01 4 1808386 1808386 A T FGFR3 Missense_Mutation p.K717M 0.24 deleterious(0) probably_damaging(0.91) TCGA-51-4079-01 4 42122174 42122174 A T BEND4 Silent p.L428L 0.19 TCGA-51-4079-01 4 48622755 48622755 G A FRYL Missense_Mutation p.P72L 0.32 deleterious(0) probably_damaging(0.971) TCGA-51-4079-01 4 49005803 49005803 T C CWH43 Missense_Mutation p.V285A 0.36 tolerated(0.23) benign(0.002) TCGA-51-4079-01 4 5827375 5827375 C G CRMP1 Missense_Mutation p.L605F 0.27 tolerated(0.35) possibly_damaging(0.595) TCGA-51-4079-01 4 68928614 68928614 T C TMPRSS11F Intron 0.40 TCGA-51-4079-01 4 89397178 89397178 C A HERC5 Missense_Mutation p.L527M 0.47 deleterious(0.02) benign(0.139) TCGA-51-4079-01 4 96470037 96470037 G T UNC5C 5'UTR 0.46 TCGA-51-4079-01 4 99342483 99342483 G T RAP1GDS1 Missense_Mutation p.A461S 0.54 tolerated(0.16) possibly_damaging(0.623) TCGA-51-4079-01 5 101755709 101755709 T A SLCO6A1 Silent p.P431P 0.41 TCGA-51-4079-01 5 135231428 135231428 C T IL9 Silent p.G26G 0.39 TCGA-51-4079-01 5 140208644 140208644 C G PCDHA6 Missense_Mutation p.T323R 0.32 tolerated_low_confidence(0.2) benign(0.238) TCGA-51-4079-01 5 140481630 140481630 C A PCDHB3 Missense_Mutation p.P466H 0.33 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-51-4079-01 5 140595824 140595824 C A PCDHB13 Missense_Mutation p.A710E 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.869) TCGA-51-4079-01 5 145649043 145649043 A G RBM27 Missense_Mutation p.M863V 0.26 deleterious(0) benign(0.122) TCGA-51-4079-01 5 147040947 147040947 C G JAKMIP2 Missense_Mutation p.R64P 0.34 deleterious(0) benign(0.161) TCGA-51-4079-01 5 150925635 150925635 T C FAT2 Missense_Mutation p.M1685V 0.41 benign(0) TCGA-51-4079-01 5 1880922 1880922 C A IRX4 Silent p.S108S 0.17 TCGA-51-4079-01 5 19473489 19473489 T G CDH18 Missense_Mutation p.Y740S 0.42 deleterious(0) possibly_damaging(0.864) TCGA-51-4079-01 5 19483469 19483469 G T CDH18 Nonsense_Mutation p.S608* 0.51 TCGA-51-4079-01 5 21752201 21752201 G A CDH12 Missense_Mutation p.A677V 0.10 deleterious(0.01) probably_damaging(0.968) TCGA-51-4079-01 5 24511481 24511481 G T CDH10 Silent p.I319I 0.21 TCGA-51-4079-01 5 24511547 24511547 G T CDH10 Missense_Mutation p.D297E 0.17 deleterious(0) probably_damaging(0.969) TCGA-51-4079-01 5 26886102 26886102 G T CDH9 Missense_Mutation p.P535T 0.23 tolerated(0.05) probably_damaging(0.999) TCGA-51-4079-01 5 3599417 3599417 C T IRX1 Missense_Mutation p.P119S 0.40 deleterious(0.02) probably_damaging(0.968) TCGA-51-4079-01 5 5146263 5146263 T A ADAMTS16 Missense_Mutation p.Y66N 0.18 tolerated(0.05) possibly_damaging(0.824) TCGA-51-4079-01 5 76714083 76714083 A T PDE8B Silent p.A647A 0.26 TCGA-51-4079-01 5 86695249 86695249 C T CCNH Silent p.E278E 0.36 TCGA-51-4079-01 5 89990346 89990346 A T GPR98 Missense_Mutation p.E2591D 0.38 benign(0.211) TCGA-51-4079-01 5 89992782 89992782 C A GPR98 Silent p.T2658T 0.34 TCGA-51-4079-01 5 95236684 95236684 C A ELL2 Missense_Mutation p.R281L 0.59 tolerated(0.06) benign(0.072) TCGA-51-4079-01 6 110777877 110777877 G T SLC22A16 Missense_Mutation p.Q133K 0.27 tolerated(0.5) benign(0.034) TCGA-51-4079-01 6 117150012 117150012 G T GPRC6A Silent p.P55P 0.27 TCGA-51-4079-01 6 117631248 117631248 C T ROS1 Missense_Mutation p.V2144I 0.25 deleterious(0.03) benign(0.373) TCGA-51-4079-01 6 136599627 136599627 C G BCLAF1 Missense_Mutation p.R131P 0.11 tolerated_low_confidence(0.27) unknown(0) TCGA-51-4079-01 6 150141619 150141619 G C LRP11 3'UTR 0.45 TCGA-51-4079-01 6 150291168 150291168 C T ULBP1 Silent p.A214A 0.09 TCGA-51-4079-01 6 152712636 152712636 C A SYNE1 Nonsense_Mutation p.E2594* 0.18 TCGA-51-4079-01 6 160526034 160526034 G C IGF2R Missense_Mutation p.S2465T 0.49 tolerated(0.07) benign(0.011) TCGA-51-4079-01 6 167708167 167708167 G T UNC93A Missense_Mutation p.G84C 0.27 deleterious(0.04) possibly_damaging(0.648) TCGA-51-4079-01 6 22292835 22292835 C A PRL Missense_Mutation p.A82S 0.25 tolerated(0.35) benign(0.168) TCGA-51-4079-01 6 26094531 26094531 A T HFE 3'UTR 0.25 TCGA-51-4079-01 6 28227784 28227784 C A NKAPL Missense_Mutation p.T212K 0.09 tolerated(0.42) unknown(0) TCGA-51-4079-01 6 31692575 31692575 T A C6orf25 Missense_Mutation p.V192E 0.28 tolerated_low_confidence(0.05) benign(0.005) TCGA-51-4079-01 6 31895807 31895807 G T CFB Missense_Mutation p.W41L 0.33 tolerated(0.47) benign(0) TCGA-51-4079-01 6 39283053 39283053 T A KCNK16 Silent p.P272P 0.35 TCGA-51-4079-01 6 39881519 39881519 T A MOCS1 Missense_Mutation p.K215M 0.36 deleterious(0) probably_damaging(0.998) TCGA-51-4079-01 6 41057378 41057378 G A NFYA Missense_Mutation p.G124S 0.25 tolerated(0.18) unknown(0) TCGA-51-4079-01 6 43111279 43111279 C T PTK7 Silent p.F732F 0.27 TCGA-51-4079-01 6 49439895 49439895 A T CENPQ Missense_Mutation p.M93L 0.17 tolerated(1) benign(0) TCGA-51-4079-01 6 54245368 54245368 G - TINAG Frame_Shift_Del 0.21 TCGA-51-4079-01 6 55441932 55441932 G T HMGCLL1 Missense_Mutation p.P48T 0.35 tolerated_low_confidence(0.34) benign(0.009) TCGA-51-4079-01 6 69703705 69703705 G T BAI3 Nonsense_Mutation p.G594* 0.24 TCGA-51-4079-01 6 76751710 76751710 T A IMPG1 Silent p.R67R 0.27 TCGA-51-4079-01 6 7862712 7862712 G C BMP6 Silent p.A395A 0.20 TCGA-51-4079-01 6 90425430 90425430 T A MDN1 Missense_Mutation p.S2268C 0.29 probably_damaging(0.926) TCGA-51-4079-01 6 99797249 99797249 G A FAXC 5'UTR 0.22 TCGA-51-4079-01 7 110763987 110763987 C T LRRN3 Nonsense_Mutation p.R387* 0.28 TCGA-51-4079-01 7 111509672 111509672 G T DOCK4 Silent p.I689I 0.27 TCGA-51-4079-01 7 119915291 119915291 A T KCND2 Missense_Mutation p.N202I 0.23 deleterious(0) probably_damaging(0.996) TCGA-51-4079-01 7 127026190 127026190 T A ZNF800 Silent p.G27G 0.28 TCGA-51-4079-01 7 127031628 127031628 C A ZNF800 5'UTR 0.27 TCGA-51-4079-01 7 132193440 132193440 G T PLXNA4 Missense_Mutation p.P5T 0.27 tolerated_low_confidence(0.15) benign(0.004) TCGA-51-4079-01 7 143701707 143701707 C T OR6B1 Silent p.I206I 0.24 TCGA-51-4079-01 7 143747840 143747840 G C OR2A5 Missense_Mutation p.V116L 0.30 tolerated(0.08) benign(0.011) TCGA-51-4079-01 7 146997380 146997380 G C CNTNAP2 Missense_Mutation p.G499A 0.33 deleterious(0) probably_damaging(0.986) TCGA-51-4079-01 7 157367056 157367056 T C PTPRN2 Intron 0.31 TCGA-51-4079-01 7 20739496 20739496 T A ABCB5 Missense_Mutation p.Y735N 0.21 deleterious(0.01) possibly_damaging(0.583) TCGA-51-4079-01 7 21640295 21640295 A G DNAH11 Missense_Mutation p.N1001S 0.23 benign(0.002) TCGA-51-4079-01 7 27135018 27135018 C A HOXA1 Missense_Mutation p.A172S 0.26 tolerated(0.43) benign(0.023) TCGA-51-4079-01 7 27135019 27135019 C A HOXA1 Silent p.L171L 0.25 TCGA-51-4079-01 7 28844106 28844106 A T CREB5 Silent p.P331P 0.22 TCGA-51-4079-01 7 28848876 28848876 C G CREB5 Missense_Mutation p.R367G 0.29 deleterious(0.02) unknown(0) TCGA-51-4079-01 7 31792826 31792826 C T PDE1C 3'UTR 0.21 TCGA-51-4079-01 7 37780665 37780665 C T GPR141 Nonsense_Mutation p.Q224* 0.28 TCGA-51-4079-01 7 39736308 39736308 A T RALA Missense_Mutation p.E116D 0.28 tolerated(1) benign(0.017) TCGA-51-4079-01 7 42006047 42006047 C A GLI3 Missense_Mutation p.R875L 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-51-4079-01 7 55753023 55753023 C A RNU6-389P 5'Flank 0.21 TCGA-51-4079-01 7 72907247 72907247 G A BAZ1B Silent p.D192D 0.20 TCGA-51-4079-01 7 82585984 82585984 C T PCLO Missense_Mutation p.D1429N 0.27 unknown(0) TCGA-51-4079-01 7 86522259 86522259 T A KIAA1324L Missense_Mutation p.Y948F 0.33 deleterious(0.02) possibly_damaging(0.723) TCGA-51-4079-01 7 95222082 95222082 C A PDK4 Missense_Mutation p.M173I 0.23 tolerated(1) benign(0.01) TCGA-51-4079-01 8 105405140 105405140 C T DPYS Missense_Mutation p.V439M 0.31 deleterious(0.04) probably_damaging(0.935) TCGA-51-4079-01 8 109241376 109241376 C A EIF3E Missense_Mutation p.A174S 0.20 deleterious(0.02) probably_damaging(0.963) TCGA-51-4079-01 8 109241378 109241378 A G EIF3E Missense_Mutation p.L173P 0.20 deleterious(0) probably_damaging(0.999) TCGA-51-4079-01 8 113277673 113277673 C A CSMD3 Missense_Mutation p.G3219C 0.29 deleterious(0.02) benign(0.061) TCGA-51-4079-01 8 118173999 118173999 A T SLC30A8 Nonsense_Mutation p.R199* 0.23 TCGA-51-4079-01 8 120613685 120613685 C A ENPP2 Missense_Mutation p.R284L 0.17 deleterious(0.02) probably_damaging(0.946) TCGA-51-4079-01 8 124382061 124382061 T G ATAD2 Missense_Mutation p.K311Q 0.27 tolerated(0.15) benign(0.218) TCGA-51-4079-01 8 125076747 125076747 C T FER1L6 Missense_Mutation p.S1163L 0.37 tolerated(0.14) benign(0.05) TCGA-51-4079-01 8 143381929 143381929 T A TSNARE1 Missense_Mutation p.Q403L 0.25 deleterious(0.01) possibly_damaging(0.649) TCGA-51-4079-01 8 143558872 143558872 A T BAI1 Missense_Mutation p.E450V 0.29 deleterious(0.03) possibly_damaging(0.728) TCGA-51-4079-01 8 143960537 143960537 C A CYP11B1 Missense_Mutation p.Q102H 0.37 tolerated(0.05) probably_damaging(0.964) TCGA-51-4079-01 8 145106851 145106851 G A OPLAH Silent p.T1196T 0.38 TCGA-51-4079-01 8 16026114 16026114 G T MSR1 Silent p.T161T 0.21 TCGA-51-4079-01 8 20112616 20112616 C T LZTS1 Missense_Mutation p.R26H 0.06 deleterious(0) possibly_damaging(0.667) TCGA-51-4079-01 8 2050546 2050546 G T MYOM2 Missense_Mutation p.E903D 0.38 tolerated(0.65) possibly_damaging(0.665) TCGA-51-4079-01 8 25323754 25323754 G T CDCA2 Missense_Mutation p.A151S 0.11 deleterious(0) possibly_damaging(0.906) TCGA-51-4079-01 8 25323755 25323755 C A CDCA2 Missense_Mutation p.A151D 0.10 deleterious(0) probably_damaging(0.985) TCGA-51-4079-01 8 26722546 26722546 G T ADRA1A 5'UTR 0.17 TCGA-51-4079-01 8 33371000 33371000 T A TTI2 5'UTR 0.25 TCGA-51-4079-01 8 42823205 42823205 A - HOOK3 Frame_Shift_Del p.K325Rfs*3 0.18 TCGA-51-4079-01 8 43197382 43197382 C G POTEA RNA 0.25 TCGA-51-4079-01 8 53852521 53852521 C A NPBWR1 Missense_Mutation p.D18E 0.40 tolerated(1) benign(0.002) TCGA-51-4079-01 8 93003903 93003903 T A RUNX1T1 Missense_Mutation p.S330C 0.27 deleterious(0.01) possibly_damaging(0.497) TCGA-51-4079-01 8 99170282 99170282 C T POP1 Missense_Mutation p.P953L 0.31 deleterious(0) probably_damaging(1) TCGA-51-4079-01 9 101911680 101911680 A G TGFBR1 3'UTR 0.10 TCGA-51-4079-01 9 102607053 102607053 T A NR4A3 Silent p.T470T 0.31 TCGA-51-4079-01 9 104171948 104171948 A C ZNF189 3'UTR 0.11 TCGA-51-4079-01 9 107267167 107267167 C A OR13F1 Silent p.P208P 0.28 TCGA-51-4079-01 9 107267168 107267168 A T OR13F1 Missense_Mutation p.M209L 0.28 tolerated(0.35) benign(0.003) TCGA-51-4079-01 9 111617356 111617356 G T ACTL7B Missense_Mutation p.D285E 0.28 deleterious(0) probably_damaging(0.999) TCGA-51-4079-01 9 111903868 111903868 C A FRRS1L Missense_Mutation p.G206V 0.30 deleterious(0) probably_damaging(0.994) TCGA-51-4079-01 9 114173302 114173302 G A KIAA0368 Missense_Mutation p.P957S 0.37 tolerated(0.4) benign(0.013) TCGA-51-4079-01 9 116925043 116925043 C G COL27A1 Silent p.A37A 0.36 TCGA-51-4079-01 9 119568076 119568076 G A ASTN2 Missense_Mutation p.A693V 0.35 deleterious(0) unknown(0) TCGA-51-4079-01 9 119903693 119903693 G C ASTN2 Intron 0.23 TCGA-51-4079-01 9 128113072 128113072 C G GAPVD1 Missense_Mutation p.Q1191E 0.09 tolerated(0.07) possibly_damaging(0.653) TCGA-51-4079-01 9 134072656 134072656 G - NUP214 Frame_Shift_Del p.G1260Efs*98 0.23 TCGA-51-4079-01 9 135778003 135778003 G A TSC1 Nonsense_Mutation p.Q794* 0.07 TCGA-51-4079-01 9 138557945 138557945 G - LCN9 Frame_Shift_Del p.W176Cfs*? 0.25 TCGA-51-4079-01 9 139391110 139391110 G A NOTCH1 Nonsense_Mutation p.Q2361* 0.15 TCGA-51-4079-01 9 139915885 139915885 C T ABCA2 Missense_Mutation p.E286K 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.731) TCGA-51-4079-01 9 140245774 140245774 C T EXD3 Silent p.K460K 0.36 TCGA-51-4079-01 9 140332424 140332424 A C ENTPD8 Missense_Mutation p.V80G 0.14 deleterious(0) probably_damaging(0.958) TCGA-51-4079-01 9 140712552 140712552 C T EHMT1 Nonsense_Mutation p.R1168* 0.32 TCGA-51-4079-01 9 14841455 14841455 G A FREM1 Missense_Mutation p.S624L 0.48 deleterious(0) probably_damaging(0.957) TCGA-51-4079-01 9 35066808 35066808 C T VCP Silent p.Q103Q 0.08 TCGA-51-4079-01 9 35870090 35870090 C T OR13J1 Silent p.L103L 0.30 TCGA-51-4079-01 9 40716206 40716206 A T FAM74A3 RNA 0.30 TCGA-51-4079-01 9 40774448 40774448 C A ZNF658 Missense_Mutation p.G276V 0.30 deleterious(0.05) possibly_damaging(0.526) TCGA-51-4079-01 9 74828885 74828885 G A GDA Missense_Mutation p.E186K 0.12 tolerated(0.17) benign(0.022) TCGA-51-4079-01 9 79118046 79118046 A G GCNT1 Missense_Mutation p.H250R 0.29 tolerated(0.34) benign(0.175) TCGA-51-4079-01 9 79118229 79118229 G T GCNT1 Missense_Mutation p.W311L 0.13 deleterious(0) probably_damaging(1) TCGA-51-4079-01 9 79319739 79319739 T C PRUNE2 Missense_Mutation p.D2484G 0.30 tolerated(0.07) possibly_damaging(0.849) TCGA-51-4079-01 9 88247953 88247953 C A AGTPBP1 Missense_Mutation p.A507S 0.25 tolerated(0.58) benign(0.001) TCGA-51-4079-01 9 90535535 90535535 C G SPATA31C1 RNA 0.31 TCGA-51-4079-01 9 91653064 91653064 G C SHC3 Nonsense_Mutation p.Y500* 0.11 TCGA-51-4079-01 X 101096492 101096492 A C NXF5 Silent p.S93S 0.47 TCGA-51-4079-01 X 101623465 101623465 G T NXF2B Silent p.L237L 0.12 TCGA-51-4079-01 X 113961268 113961268 A T HTR2C Intron 0.29 TCGA-51-4079-01 X 135405370 135405370 C A GPR112 Missense_Mutation p.S168R 0.33 tolerated(0.11) benign(0.089) TCGA-51-4079-01 X 153688715 153688715 G T PLXNA3 Silent p.R64R 0.37 TCGA-51-4079-01 X 17750515 17750515 C A NHS Silent p.I1608I 0.20 TCGA-51-4079-01 X 3002640 3002640 G T ARSF Nonsense_Mutation p.E255* 0.21 TCGA-51-4079-01 X 30261046 30261046 C A MAGEB4 Missense_Mutation p.P265H 0.34 deleterious(0) probably_damaging(1) TCGA-51-4079-01 X 37953621 37953621 G C SYTL5 Missense_Mutation p.R302P 0.14 tolerated(0.27) benign(0.326) TCGA-51-4079-01 X 64138932 64138932 G T ZC4H2 Missense_Mutation p.P184Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-51-4079-01 X 69282373 69282373 T A OTUD6A 5'UTR 0.50 TCGA-51-4079-01 X 85906111 85906111 A T DACH2 Missense_Mutation p.Q238L 0.37 deleterious(0) benign(0.02) TCGA-51-4080-01 10 101464369 101464369 G A ENTPD7 Missense_Mutation p.A582T 0.87 tolerated_low_confidence(0.58) benign(0.004) TCGA-51-4080-01 10 115905426 115905426 T C C10orf118 Missense_Mutation p.E328G 0.04 tolerated(0.13) possibly_damaging(0.856) TCGA-51-4080-01 10 27059274 27059274 G A ABI1 Missense_Mutation p.H160Y 0.77 deleterious(0.01) possibly_damaging(0.723) TCGA-51-4080-01 10 27059275 27059275 C A ABI1 Splice_Site p.X160_splice 0.76 TCGA-51-4080-01 10 28348635 28348635 A T MPP7 Silent p.G414G 0.71 TCGA-51-4080-01 10 68686951 68686951 G C LRRTM3 Missense_Mutation p.D93H 0.82 deleterious(0) probably_damaging(1) TCGA-51-4080-01 10 73848064 73848064 C A SPOCK2 Missense_Mutation p.R8L 0.75 deleterious_low_confidence(0.01) benign(0) TCGA-51-4080-01 10 74914078 74914078 G C ECD Missense_Mutation p.P240R 0.56 deleterious(0) probably_damaging(0.998) TCGA-51-4080-01 10 91533730 91533730 T A KIF20B Silent p.I1756I 0.74 TCGA-51-4080-01 11 100169925 100169925 G T CNTN5 Missense_Mutation p.G806V 0.42 deleterious(0.02) probably_damaging(1) TCGA-51-4080-01 11 105880813 105880813 T C MSANTD4 Missense_Mutation p.M163V 0.45 tolerated(0.64) benign(0.004) TCGA-51-4080-01 11 108044245 108044245 G T NPAT Missense_Mutation p.S489Y 0.43 deleterious(0.03) possibly_damaging(0.812) TCGA-51-4080-01 11 22398990 22398990 C A SLC17A6 Missense_Mutation p.L485I 0.42 tolerated(0.09) benign(0.003) TCGA-51-4080-01 11 40136857 40136857 C A LRRC4C Missense_Mutation p.R329L 0.37 deleterious(0.01) possibly_damaging(0.728) TCGA-51-4080-01 11 4411401 4411401 C A TRIM21 Missense_Mutation p.S80I 0.45 tolerated(0.14) benign(0.049) TCGA-51-4080-01 11 4661500 4661500 T A OR51D1 Silent p.S160S 0.47 TCGA-51-4080-01 11 4903252 4903252 C G OR51T1 Silent p.L68L 0.38 TCGA-51-4080-01 11 55563899 55563899 C A OR5D14 Missense_Mutation p.L290M 0.37 deleterious(0) possibly_damaging(0.903) TCGA-51-4080-01 11 55999874 55999874 G A OR5T2 Missense_Mutation p.A263V 0.40 deleterious(0.04) benign(0.327) TCGA-51-4080-01 11 57106022 57106022 A C P2RX3 5'UTR 0.46 TCGA-51-4080-01 11 5905792 5905792 C A OR52E4 Missense_Mutation p.N90K 0.48 tolerated(0.13) benign(0.004) TCGA-51-4080-01 11 59578177 59578177 T A MRPL16 5'UTR 0.51 TCGA-51-4080-01 11 60482867 60482867 G T MS4A8 Nonsense_Mutation p.E245* 0.25 TCGA-51-4080-01 11 61042035 61042035 C G VWCE Missense_Mutation p.R506P 0.30 deleterious(0.01) possibly_damaging(0.902) TCGA-51-4080-01 11 6265355 6265355 G T CNGA4 Missense_Mutation p.A482S 0.51 tolerated(0.25) benign(0.419) TCGA-51-4080-01 11 6423356 6423356 G C APBB1 Silent p.P446P 0.43 TCGA-51-4080-01 11 64568595 64568595 C A MAP4K2 Missense_Mutation p.G173V 0.40 deleterious(0) benign(0.328) TCGA-51-4080-01 11 65265274 65265275 - A MALAT1 RNA 0.41 TCGA-51-4080-01 11 65266582 65266582 A G MALAT1 RNA 0.57 TCGA-51-4080-01 11 67372426 67372426 G T C11orf72 Missense_Mutation p.L39M 0.38 benign(0.003) TCGA-51-4080-01 11 72288475 72288475 C T PDE2A Missense_Mutation p.G927S 0.45 tolerated_low_confidence(0.06) benign(0.001) TCGA-51-4080-01 11 73718167 73718167 C A UCP3 5'UTR 0.20 TCGA-51-4080-01 11 74977313 74977313 T A ARRB1 Missense_Mutation p.D384V 0.51 deleterious(0) possibly_damaging(0.703) TCGA-51-4080-01 11 76924036 76924036 G A MYO7A Missense_Mutation p.A2132T 0.31 deleterious(0) probably_damaging(0.999) TCGA-51-4080-01 11 89431784 89431784 C A FOLH1B RNA 0.27 TCGA-51-4080-01 11 95522558 95522558 T G FAM76B Missense_Mutation p.K29Q 0.26 deleterious(0.04) benign(0.131) TCGA-51-4080-01 11 99715950 99715950 C A CNTN5 Missense_Mutation p.T178N 0.47 tolerated(0.09) benign(0.112) TCGA-51-4080-01 12 100796198 100796200 GAG - SLC17A8 In_Frame_Del p.E283del 0.44 TCGA-51-4080-01 12 109971309 109971309 C T UBE3B Silent p.F987F 0.11 TCGA-51-4080-01 12 111052162 111052162 G A TCTN1 Missense_Mutation p.A59T 0.52 tolerated(0.23) benign(0.015) TCGA-51-4080-01 12 1137525 1137525 G T ERC1 Missense_Mutation p.M152I 0.41 tolerated(0.1) benign(0.101) TCGA-51-4080-01 12 1137526 1137526 G T ERC1 Missense_Mutation p.D153Y 0.41 deleterious(0) probably_damaging(0.982) TCGA-51-4080-01 12 124330637 124330637 T C DNAH10 Missense_Mutation p.M1799T 0.40 probably_damaging(0.978) TCGA-51-4080-01 12 129566527 129566527 C A TMEM132D Missense_Mutation p.G567V 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-51-4080-01 12 16507203 16507203 A T MGST1 Missense_Mutation p.Q6L 0.39 tolerated(0.2) benign(0.001) TCGA-51-4080-01 12 41316152 41316152 G A CNTN1 Missense_Mutation p.D108N 0.41 deleterious(0.04) possibly_damaging(0.843) TCGA-51-4080-01 12 48368603 48368603 G C COL2A1 Missense_Mutation p.A1310G 0.45 unknown(0) TCGA-51-4080-01 12 51281029 51281029 G - TMPRSS12 Intron 0.31 TCGA-51-4080-01 12 53454219 53454219 G A TENC1 Missense_Mutation p.G893D 0.47 tolerated(0.4) benign(0.019) TCGA-51-4080-01 12 54964082 54964082 G A PDE1B Missense_Mutation p.A179T 0.47 deleterious(0.01) possibly_damaging(0.587) TCGA-51-4080-01 12 57872382 57872410 CTTCCTGGAAAGGCTTCAGAAGGCTGGGG - ARHGAP9 Frame_Shift_Del p.S149Rfs*35 0.53 TCGA-51-4080-01 12 66152358 66152358 G A RPSAP52 RNA 0.45 TCGA-51-4080-01 12 7868830 7868830 G T DPPA3 Missense_Mutation p.V122F 0.27 tolerated(0.17) probably_damaging(0.972) TCGA-51-4080-01 12 82147808 82147808 C A PPFIA2 Missense_Mutation p.D65Y 0.55 deleterious(0) probably_damaging(0.959) TCGA-51-4080-01 12 9750731 9750731 G T KLRB1 Missense_Mutation p.D147E 0.40 tolerated(1) benign(0.008) TCGA-51-4080-01 13 101287430 101287430 C A TMTC4 Nonsense_Mutation p.G408* 0.36 TCGA-51-4080-01 13 101759882 101759882 C A NALCN Missense_Mutation p.R845S 0.35 tolerated(0.1) benign(0.05) TCGA-51-4080-01 13 101759883 101759883 C A NALCN Missense_Mutation p.R845M 0.35 deleterious(0.01) possibly_damaging(0.885) TCGA-51-4080-01 13 111117753 111117753 G A COL4A2 Missense_Mutation p.G593D 0.36 benign(0.006) TCGA-51-4080-01 13 26411317 26411317 C G ATP8A2 Missense_Mutation p.P924R 0.38 deleterious(0) probably_damaging(1) TCGA-51-4080-01 13 32914165 32914165 A T BRCA2 Silent p.A1891A 0.32 TCGA-51-4080-01 13 46725120 46725120 A T LCP1 Missense_Mutation p.L278Q 0.41 deleterious(0) probably_damaging(1) TCGA-51-4080-01 13 51948489 51948489 G C INTS6 Missense_Mutation p.I653M 0.46 tolerated(0.24) benign(0.215) TCGA-51-4080-01 13 53217355 53217355 G T HNRNPA1L2 Missense_Mutation p.G243V 0.41 deleterious(0.01) unknown(0) TCGA-51-4080-01 13 70514254 70514254 G T KLHL1 Missense_Mutation p.P311Q 0.55 deleterious(0.01) probably_damaging(0.996) TCGA-51-4080-01 13 77760039 77760039 G A MYCBP2 Missense_Mutation p.R1433C 0.45 probably_damaging(0.989) TCGA-51-4080-01 13 86368471 86368471 C A SLITRK6 Nonsense_Mutation p.E725* 0.39 TCGA-51-4080-01 14 102916037 102916037 G C TECPR2 Silent p.S1049S 0.47 TCGA-51-4080-01 14 19378425 19378425 G T OR11H12 Nonsense_Mutation p.G278* 0.42 TCGA-51-4080-01 14 20249064 20249064 G T OR4M1 Nonsense_Mutation p.E195* 0.43 TCGA-51-4080-01 14 22466256 22466256 C A TRAV17 Silent p.G62G 0.34 TCGA-51-4080-01 14 22466395 22466395 T C TRAV17 Missense_Mutation p.C109R 0.49 deleterious(0) probably_damaging(0.999) TCGA-51-4080-01 14 24877620 24877620 G T NYNRIN Silent p.G248G 0.42 TCGA-51-4080-01 14 42356843 42356843 A T LRFN5 Missense_Mutation p.N339Y 0.40 deleterious(0) probably_damaging(0.992) TCGA-51-4080-01 14 44974473 44974473 G T FSCB Missense_Mutation p.P573H 0.34 deleterious(0) possibly_damaging(0.526) TCGA-51-4080-01 14 69256600 69256613 GGCTGTCCAGCAGC - ZFP36L1 Frame_Shift_Del p.L219Hfs*13 0.46 TCGA-51-4080-01 14 70513078 70513078 G T SLC8A3 Intron 0.57 TCGA-51-4080-01 14 70515418 70515418 G T SLC8A3 Intron 0.44 TCGA-51-4080-01 14 73719481 73719481 G A PAPLN Silent p.K337K 0.11 TCGA-51-4080-01 14 80158586 80158586 G T NRXN3 Intron 0.40 TCGA-51-4080-01 15 23687615 23687615 A G GOLGA6L2 Missense_Mutation p.L211P 0.68 probably_damaging(0.995) TCGA-51-4080-01 15 25924794 25924794 T A ATP10A Silent p.P1398P 0.37 TCGA-51-4080-01 15 28356766 28356766 A T HERC2 3'UTR 0.50 TCGA-51-4080-01 15 42693953 42693953 G T CAPN3 Missense_Mutation p.R490L 0.46 deleterious(0) probably_damaging(1) TCGA-51-4080-01 15 48499896 48499896 G A SLC12A1 5'UTR 0.38 TCGA-51-4080-01 15 48539555 48539555 T A SLC12A1 Missense_Mutation p.Y528N 0.51 deleterious(0) possibly_damaging(0.825) TCGA-51-4080-01 15 48713001 48713001 C A FBN1 Missense_Mutation p.V2568L 0.46 benign(0.061) TCGA-51-4080-01 15 49329817 49329817 G A SECISBP2L Silent p.Y58Y 0.45 TCGA-51-4080-01 15 74327786 74327786 G T PML Intron 0.40 TCGA-51-4080-01 15 79058441 79058441 G A ADAMTS7 Missense_Mutation p.A1271V 0.41 tolerated(0.39) benign(0.008) TCGA-51-4080-01 16 2094632 2094632 C T NTHL1 Missense_Mutation p.R183K 0.87 tolerated(0.95) benign(0.071) TCGA-51-4080-01 16 2279622 2279622 G C E4F1 Missense_Mutation p.V121L 0.88 tolerated(0.06) benign(0.305) TCGA-51-4080-01 16 23464258 23464258 C T COG7 Missense_Mutation p.A20T 0.44 tolerated(0.07) probably_damaging(0.959) TCGA-51-4080-01 16 31196347 31196347 G T FUS Missense_Mutation p.G204V 0.49 tolerated(0.19) unknown(0) TCGA-51-4080-01 16 4390273 4390273 C A CORO7-PAM16 3'UTR 0.90 TCGA-51-4080-01 16 4895079 4895079 C A GLYR1 Missense_Mutation p.D51Y 0.84 deleterious(0) possibly_damaging(0.746) TCGA-51-4080-01 16 56481718 56481718 T A NUDT21 Silent p.G100G 0.44 TCGA-51-4080-01 16 66432377 66432377 G A CDH5 Missense_Mutation p.A502T 0.43 deleterious(0) probably_damaging(1) TCGA-51-4080-01 16 67691204 67691204 C G RLTPR Missense_Mutation p.P1394A 0.44 tolerated(0.08) benign(0.046) TCGA-51-4080-01 16 68732173 68732173 C G CDH3 Missense_Mutation p.S787C 0.45 deleterious(0) probably_damaging(1) TCGA-51-4080-01 16 77353866 77353866 C A ADAMTS18 Missense_Mutation p.W804C 0.40 deleterious(0) probably_damaging(1) TCGA-51-4080-01 16 846977 846977 C A CHTF18 Missense_Mutation p.P873Q 0.84 tolerated(0.11) possibly_damaging(0.736) TCGA-51-4080-01 16 89735967 89735967 C A SPATA33 3'UTR 0.13 TCGA-51-4080-01 17 18054736 18054736 A G MYO15A Missense_Mutation p.Y2561C 0.85 unknown(0) TCGA-51-4080-01 17 3195189 3195189 G T OR3A1 Silent p.R230R 0.20 TCGA-51-4080-01 17 3346530 3346530 A C SPATA22 Missense_Mutation p.Y280D 0.84 tolerated(0.11) benign(0.299) TCGA-51-4080-01 17 36353737 36353737 T A RP11-1407O15.2 Missense_Mutation p.E375V 0.06 TCGA-51-4080-01 17 36714598 36714598 G T SRCIN1 Missense_Mutation p.T689K 0.30 deleterious(0) probably_damaging(0.991) TCGA-51-4080-01 17 46657302 46657302 G C HOXB4 5'UTR 0.26 TCGA-51-4080-01 17 48818594 48818594 A C LUC7L3 Missense_Mutation p.Q113P 0.29 tolerated(0.18) unknown(0) TCGA-51-4080-01 17 48916920 48916920 G T WFIKKN2 Missense_Mutation p.A91S 0.63 deleterious(0.04) possibly_damaging(0.739) TCGA-51-4080-01 17 54558135 54558135 G T ANKFN1 Missense_Mutation p.A686S 0.57 deleterious(0.04) probably_damaging(0.994) TCGA-51-4080-01 17 56247272 56247272 C G OR4D2 Missense_Mutation p.L86V 0.63 deleterious(0.03) benign(0.046) TCGA-51-4080-01 17 63554499 63554499 C T AXIN2 Silent p.K80K 0.28 TCGA-51-4080-01 17 63554581 63554581 G C AXIN2 Missense_Mutation p.S53C 0.23 tolerated(0.05) benign(0.115) TCGA-51-4080-01 17 63898350 63898350 C T CEP112 Missense_Mutation p.E695K 0.60 deleterious(0.02) benign(0.264) TCGA-51-4080-01 17 65914834 65914834 A G BPTF Missense_Mutation p.R1770G 0.27 probably_damaging(0.999) TCGA-51-4080-01 17 74288124 74288153 CCAGGTTGGATCAAACCACGCTGGTCCATT - QRICH2 In_Frame_Del p.M720_G729del 0.28 TCGA-51-4080-01 17 7574017 7574017 C A TP53 Missense_Mutation p.R337L 0.86 deleterious(0.01) probably_damaging(0.914) TCGA-51-4080-01 17 79080670 79080670 A T BAIAP2 Missense_Mutation p.Q488L 0.79 tolerated(0.14) benign(0.131) TCGA-51-4080-01 17 79207258 79207258 C A ENTHD2 Missense_Mutation p.G167V 0.31 deleterious(0) possibly_damaging(0.673) TCGA-51-4080-01 17 8079165 8079165 C A TMEM107 Missense_Mutation p.A62S 0.85 deleterious(0.04) probably_damaging(0.952) TCGA-51-4080-01 18 43243838 43243838 C T SLC14A2 Silent p.H480H 0.41 TCGA-51-4080-01 18 43502326 43502326 T C EPG5 Missense_Mutation p.M1027V 0.54 tolerated(0.07) benign(0) TCGA-51-4080-01 18 5424262 5424262 T A EPB41L3 Nonsense_Mutation p.R388* 0.38 TCGA-51-4080-01 18 74622624 74622624 G T ZNF236 Missense_Mutation p.V886L 0.39 tolerated(0.06) benign(0.033) TCGA-51-4080-01 18 76752207 76752207 C A SALL3 Missense_Mutation p.S72R 0.28 tolerated(0.1) unknown(0) TCGA-51-4080-01 19 15989695 15989695 C T CYP4F2 Silent p.A483A 0.44 TCGA-51-4080-01 19 15989720 15989720 A T CYP4F2 Missense_Mutation p.M475K 0.37 deleterious(0) probably_damaging(0.968) TCGA-51-4080-01 19 17937686 17937686 T A JAK3 Missense_Mutation p.S1081C 0.37 deleterious(0.01) possibly_damaging(0.756) TCGA-51-4080-01 19 20117559 20117559 T A ZNF682 Missense_Mutation p.H251L 0.41 deleterious(0) probably_damaging(0.994) TCGA-51-4080-01 19 22941562 22941562 G T ZNF99 Silent p.A383A 0.41 TCGA-51-4080-01 19 40433441 40433441 C A FCGBP Silent p.L276L 0.44 TCGA-51-4080-01 19 42856450 42856450 T - MEGF8 Frame_Shift_Del p.A998Pfs*28 0.47 TCGA-51-4080-01 19 51219713 51219713 T C SHANK1 Missense_Mutation p.D93G 0.42 probably_damaging(0.932) TCGA-51-4080-01 19 51738444 51738444 G A CD33 Missense_Mutation p.G260R 0.51 deleterious(0) probably_damaging(0.981) TCGA-51-4080-01 19 52497080 52497080 C A ZNF615 Missense_Mutation p.V428L 0.45 tolerated(0.26) benign(0.003) TCGA-51-4080-01 19 53770896 53770896 A G VN1R4 Missense_Mutation p.V8A 0.34 deleterious(0.03) benign(0.049) TCGA-51-4080-01 19 53905317 53905317 G C ZNF765 Splice_Site p.X6_splice 0.06 TCGA-51-4080-01 19 53952764 53952764 G C ZNF761 Splice_Site 0.41 TCGA-51-4080-01 19 55086941 55086941 C A LILRA2 Missense_Mutation p.Q292K 0.49 deleterious(0.04) possibly_damaging(0.507) TCGA-51-4080-01 19 55665559 55665559 G A TNNI3 Nonsense_Mutation p.Q130* 0.36 TCGA-51-4080-01 19 58564960 58564960 C A ZSCAN1 Missense_Mutation p.D256E 0.38 tolerated(0.89) benign(0) TCGA-51-4080-01 19 58596178 58596178 G A ZSCAN18 Silent p.Y525Y 0.38 TCGA-51-4080-01 19 58965063 58965063 G T ZNF324B Intron 0.50 TCGA-51-4080-01 19 9089943 9089943 G T MUC16 Silent p.T624T 0.43 TCGA-51-4080-01 1 10403337 10403337 C A KIF1B Missense_Mutation p.S1181Y 0.82 deleterious(0) probably_damaging(0.994) TCGA-51-4080-01 1 111495194 111495194 T C LRIF1 Silent p.S104S 0.88 TCGA-51-4080-01 1 11721284 11721284 C T FBXO44 Missense_Mutation p.P241L 0.76 tolerated(0.26) possibly_damaging(0.753) TCGA-51-4080-01 1 118530769 118530769 T C SPAG17 Silent p.P1860P 0.75 TCGA-51-4080-01 1 155580069 155580069 A G MSTO1 Silent p.T10T 0.51 TCGA-51-4080-01 1 156714059 156714059 C A HDGF Missense_Mutation p.A145S 0.61 deleterious(0.04) benign(0.219) TCGA-51-4080-01 1 158259909 158259909 G T CD1C Missense_Mutation p.A19S 0.22 tolerated(0.18) benign(0.017) TCGA-51-4080-01 1 159904551 159904551 T C IGSF9 Silent p.S245S 0.65 TCGA-51-4080-01 1 169349804 169349804 A T BLZF1 Missense_Mutation p.S252C 0.27 deleterious(0.02) possibly_damaging(0.664) TCGA-51-4080-01 1 169555505 169555505 G A F5 Silent p.G40G 0.61 TCGA-51-4080-01 1 171753036 171753036 G C METTL13 Missense_Mutation p.D104H 0.27 deleterious(0) probably_damaging(1) TCGA-51-4080-01 1 175046735 175046735 G T TNN Missense_Mutation p.D61Y 0.40 deleterious(0) possibly_damaging(0.896) TCGA-51-4080-01 1 175299209 175299209 C G TNR Splice_Site p.X1265_splice 0.62 TCGA-51-4080-01 1 176563861 176563861 G - PAPPA2 Frame_Shift_Del p.H375Tfs*15 0.43 TCGA-51-4080-01 1 190067447 190067447 C A BRINP3 Missense_Mutation p.V668L 0.29 tolerated(0.33) probably_damaging(0.978) TCGA-51-4080-01 1 196965178 196965178 C A CFHR5 Missense_Mutation p.P273T 0.28 deleterious(0) probably_damaging(0.999) TCGA-51-4080-01 1 202936319 202936319 C T CYB5R1 Silent p.T5T 0.25 TCGA-51-4080-01 1 203276598 203276598 G C BTG2 3'UTR 0.51 TCGA-51-4080-01 1 205116781 205116781 A G DSTYK Silent p.L899L 0.59 TCGA-51-4080-01 1 216144034 216144034 G A USH2A Missense_Mutation p.A2297V 0.33 benign(0.086) TCGA-51-4080-01 1 237798254 237798254 G A RYR2 Missense_Mutation p.E2252K 0.29 probably_damaging(0.976) TCGA-51-4080-01 1 237921021 237921021 C T RYR2 Missense_Mutation p.A3757V 0.28 benign(0.045) TCGA-51-4080-01 1 237942003 237942003 G A RYR2 Missense_Mutation p.S3938N 0.26 probably_damaging(0.988) TCGA-51-4080-01 1 247695265 247695265 G T OR2C3 Silent p.P183P 0.69 TCGA-51-4080-01 1 247835993 247835993 A C OR13G1 Nonsense_Mutation p.Y117* 0.30 TCGA-51-4080-01 1 247920813 247920813 C T OR1C1 Missense_Mutation p.R299K 0.21 tolerated(0.09) benign(0.074) TCGA-51-4080-01 1 247978629 247978629 C A OR14A16 Missense_Mutation p.D135Y 0.31 deleterious(0) benign(0.024) TCGA-51-4080-01 1 248004903 248004903 G A OR11L1 Missense_Mutation p.A99V 0.31 tolerated(0.62) benign(0.004) TCGA-51-4080-01 1 248263567 248263567 T C OR2L13 Missense_Mutation p.L297P 0.57 deleterious(0.01) probably_damaging(0.999) TCGA-51-4080-01 1 248309138 248309138 C A OR2M5 Missense_Mutation p.S230Y 0.59 deleterious(0) probably_damaging(0.968) TCGA-51-4080-01 1 248437007 248437007 A T OR2T33 Missense_Mutation p.L37Q 0.24 deleterious(0) probably_damaging(0.95) TCGA-51-4080-01 1 248525905 248525905 T A OR2T4 Silent p.P341P 0.31 TCGA-51-4080-01 1 27056326 27056326 C - ARID1A Frame_Shift_Del p.M442Wfs*177 0.59 TCGA-51-4080-01 1 65309869 65309869 G A JAK1 Missense_Mutation p.P761S 0.09 deleterious(0) probably_damaging(1) TCGA-51-4080-01 1 70504838 70504838 C A LRRC7 Missense_Mutation p.P1073T 0.94 deleterious(0.01) probably_damaging(0.998) TCGA-51-4080-01 1 75805294 75805294 G T SLC44A5 Missense_Mutation p.P25Q 0.83 deleterious(0.02) probably_damaging(0.914) TCGA-51-4080-01 20 16359631 16359631 C A KIF16B Nonsense_Mutation p.E1006* 0.43 TCGA-51-4080-01 20 39990279 39990279 G T EMILIN3 Missense_Mutation p.L644I 0.42 tolerated(0.06) possibly_damaging(0.788) TCGA-51-4080-01 20 44036967 44036967 G T DBNDD2 Missense_Mutation p.A56S 0.59 tolerated_low_confidence(0.05) benign(0.011) TCGA-51-4080-01 20 45315471 45315471 G A TP53RK Missense_Mutation p.S228F 0.44 tolerated(0.26) benign(0.003) TCGA-51-4080-01 20 61943356 61943356 G T COL20A1 Silent p.V584V 0.59 TCGA-51-4080-01 20 61943357 61943357 C A COL20A1 Missense_Mutation p.R585S 0.59 tolerated(0.1) benign(0.101) TCGA-51-4080-01 21 10906938 10906938 C T TPTE Missense_Mutation p.M541I 0.14 tolerated_low_confidence(0.28) benign(0) TCGA-51-4080-01 21 35144463 35144463 G T ITSN1 Nonsense_Mutation p.E381* 0.50 TCGA-51-4080-01 21 44185586 44185586 C A PDE9A Missense_Mutation p.N446K 0.34 deleterious(0.03) possibly_damaging(0.806) TCGA-51-4080-01 21 44430176 44430176 C A PKNOX1 Missense_Mutation p.P65T 0.31 deleterious(0) probably_damaging(0.997) TCGA-51-4080-01 22 16287578 16287578 C G POTEH Missense_Mutation p.C103S 0.28 tolerated_low_confidence(0.86) benign(0.001) TCGA-51-4080-01 22 19864684 19864684 G A TXNRD2 Silent p.L507L 0.55 TCGA-51-4080-01 22 21799774 21799774 C T HIC2 Missense_Mutation p.S197L 0.38 deleterious(0.02) benign(0.307) TCGA-51-4080-01 22 37769059 37769059 C A ELFN2 3'UTR 0.55 TCGA-51-4080-01 22 37769060 37769060 C A ELFN2 3'UTR 0.51 TCGA-51-4080-01 22 38219752 38219752 G A GALR3 Silent p.L113L 0.42 TCGA-51-4080-01 22 41928669 41928669 C G POLR3H Missense_Mutation p.V97L 0.39 tolerated(0.1) benign(0.381) TCGA-51-4080-01 2 100194833 100194833 G A AFF3 Silent p.N983N 0.21 TCGA-51-4080-01 2 105654683 105654683 C A MRPS9 Missense_Mutation p.Q45K 0.29 tolerated_low_confidence(0.07) benign(0.01) TCGA-51-4080-01 2 144764848 144764848 T G GTDC1 Missense_Mutation p.H259P 0.36 tolerated_low_confidence(0.3) benign(0.105) TCGA-51-4080-01 2 153519149 153519149 G A PRPF40A Nonsense_Mutation p.R764* 0.30 TCGA-51-4080-01 2 167327160 167327160 G C SCN7A Missense_Mutation p.T210S 0.40 deleterious(0.04) benign(0.04) TCGA-51-4080-01 2 168103567 168103567 G T XIRP2 Missense_Mutation p.D1889Y 0.43 possibly_damaging(0.807) TCGA-51-4080-01 2 168103615 168103615 G C XIRP2 Missense_Mutation p.A1905P 0.38 probably_damaging(0.937) TCGA-51-4080-01 2 179400408 179400408 A G TTN Missense_Mutation p.I33645T 0.44 TCGA-51-4080-01 2 179414471 179414471 G A TTN Missense_Mutation p.R30660W 0.46 TCGA-51-4080-01 2 179500272 179500272 C T TTN Missense_Mutation p.G13927R 0.33 TCGA-51-4080-01 2 179581922 179581922 C A TTN Silent p.L8513L 0.43 TCGA-51-4080-01 2 179599249 179599249 G C TTN Missense_Mutation p.T5101S 0.42 TCGA-51-4080-01 2 179733888 179733888 C G CCDC141 Missense_Mutation p.D784H 0.38 deleterious(0.05) possibly_damaging(0.73) TCGA-51-4080-01 2 180383331 180383331 G T ZNF385B Missense_Mutation p.T144K 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-51-4080-01 2 187627521 187627521 G T FAM171B Nonsense_Mutation p.E818* 0.44 TCGA-51-4080-01 2 189899824 189899824 G A COL5A2 Missense_Mutation p.R1391C 0.55 unknown(0) TCGA-51-4080-01 2 204822598 204822598 G A ICOS Missense_Mutation p.R193K 0.46 tolerated(0.43) benign(0.003) TCGA-51-4080-01 2 211465305 211465305 C T CPS1 Missense_Mutation p.L532F 0.38 tolerated(0.97) benign(0.2) TCGA-51-4080-01 2 21230036 21230036 G T APOB Missense_Mutation p.A3235D 0.31 benign(0.412) TCGA-51-4080-01 2 215862486 215862486 G C ABCA12 Missense_Mutation p.A1076G 0.42 deleterious(0.01) probably_damaging(0.984) TCGA-51-4080-01 2 216241299 216241299 C A FN1 Missense_Mutation p.V1937F 0.44 deleterious(0.01) probably_damaging(0.962) TCGA-51-4080-01 2 228882652 228882652 T A SPHKAP Missense_Mutation p.N973I 0.38 tolerated(0.06) possibly_damaging(0.531) TCGA-51-4080-01 2 230253096 230253096 A C DNER Missense_Mutation p.I580M 0.39 deleterious(0.01) benign(0.343) TCGA-51-4080-01 2 234468512 234468512 T C USP40 Missense_Mutation p.Q121R 0.43 tolerated(0.08) possibly_damaging(0.666) TCGA-51-4080-01 2 234775533 234775533 G A MSL3P1 RNA 0.35 TCGA-51-4080-01 2 238283145 238283145 C T COL6A3 Missense_Mutation p.V1197I 0.41 benign(0.206) TCGA-51-4080-01 2 241658532 241658532 C G KIF1A Missense_Mutation p.R1702P 0.43 deleterious(0) probably_damaging(1) TCGA-51-4080-01 2 26696918 26696918 C A OTOF Missense_Mutation p.G1117C 0.61 deleterious(0) probably_damaging(1) TCGA-51-4080-01 2 27826121 27826121 C T ZNF512 Missense_Mutation p.P295S 0.27 tolerated(0.33) probably_damaging(0.939) TCGA-51-4080-01 2 45704186 45704186 T A SRBD1 Silent p.P665P 0.53 TCGA-51-4080-01 2 58350361 58350361 G T VRK2 Missense_Mutation p.K223N 0.25 tolerated(0.17) possibly_damaging(0.644) TCGA-51-4080-01 2 68361898 68361898 G T WDR92 Missense_Mutation p.L268M 0.20 deleterious(0.01) probably_damaging(0.991) TCGA-51-4080-01 2 71058916 71058916 T C CD207 Missense_Mutation p.Y251C 0.28 tolerated(0.11) benign(0.151) TCGA-51-4080-01 2 77745405 77745405 C T LRRTM4 Intron 0.63 TCGA-51-4080-01 2 8952524 8952524 C T KIDINS220 Splice_Site p.X168_splice 0.25 TCGA-51-4080-01 3 133647056 133647056 G A C3orf36 3'UTR 0.19 TCGA-51-4080-01 3 141011380 141011380 G A ACPL2 Missense_Mutation p.R259H 0.04 deleterious(0.03) benign(0.126) TCGA-51-4080-01 3 149216547 149216547 G A TM4SF4 Missense_Mutation p.R147Q 0.05 tolerated(0.71) benign(0.005) TCGA-51-4080-01 3 150321258 150321258 A T SELT Missense_Mutation p.T37S 0.45 tolerated(0.55) benign(0.006) TCGA-51-4080-01 3 155282833 155282833 C T PLCH1 Missense_Mutation p.D302N 0.14 tolerated(0.05) probably_damaging(0.936) TCGA-51-4080-01 3 15762485 15762485 T C ANKRD28 Silent p.A281A 0.87 TCGA-51-4080-01 3 169485535 169485535 G T ACTRT3 Silent p.A268A 0.44 TCGA-51-4080-01 3 172351621 172351621 G - NCEH1 Frame_Shift_Del p.L331Sfs*53 0.17 TCGA-51-4080-01 3 180366077 180366077 G T CCDC39 Missense_Mutation p.T413K 0.49 tolerated(1) benign(0.003) TCGA-51-4080-01 3 183770843 183770843 C A HTR3C 5'UTR 0.34 TCGA-51-4080-01 3 47468674 47468674 G A SCAP Missense_Mutation p.T237I 0.85 deleterious(0) possibly_damaging(0.781) TCGA-51-4080-01 3 63601184 63601184 G C SYNPR 3'UTR 0.70 TCGA-51-4080-01 3 65415803 65415821 ACAATCACATCCCCTGTAG - MAGI1 Splice_Site p.X516_splice 0.83 TCGA-51-4080-01 3 69111294 69111294 T A UBA3 Missense_Mutation p.R244W 0.73 deleterious(0) probably_damaging(1) TCGA-51-4080-01 3 93734029 93734029 C T STX19 Missense_Mutation p.E29K 0.47 tolerated(0.12) benign(0.025) TCGA-51-4080-01 4 10446229 10446229 T C ZNF518B Missense_Mutation p.N575S 0.41 tolerated(0.85) benign(0.003) TCGA-51-4080-01 4 115997243 115997243 C A NDST4 Missense_Mutation p.G317V 0.49 deleterious(0) probably_damaging(0.999) TCGA-51-4080-01 4 177248312 177248312 G T SPCS3 Splice_Site p.X99_splice 0.48 TCGA-51-4080-01 4 183714078 183714078 G T TENM3 Missense_Mutation p.G2085C 0.10 deleterious(0) probably_damaging(0.979) TCGA-51-4080-01 4 22749453 22749453 C A GBA3 Missense_Mutation p.S274Y 0.35 tolerated(0.06) benign(0.101) TCGA-51-4080-01 4 40045009 40045009 C T RP11-333E13.4 RNA 0.38 TCGA-51-4080-01 4 42145884 42145884 G A BEND4 Silent p.G205G 0.32 TCGA-51-4080-01 4 42576678 42576678 A T ATP8A1 Missense_Mutation p.V418E 0.50 tolerated(0.08) probably_damaging(0.998) TCGA-51-4080-01 4 44177251 44177251 T A KCTD8 Silent p.I326I 0.38 TCGA-51-4080-01 4 66230755 66230755 A G EPHA5 Missense_Mutation p.L739S 0.43 deleterious(0) probably_damaging(0.999) TCGA-51-4080-01 4 70504808 70504808 G A UGT2A2 Missense_Mutation p.P184L 0.39 tolerated(0.59) benign(0.005) TCGA-51-4080-01 4 71115032 71115032 T C CSN3 Silent p.N135N 0.41 TCGA-51-4080-01 4 71396799 71396799 G T AMTN Missense_Mutation p.G134V 0.42 deleterious(0) probably_damaging(1) TCGA-51-4080-01 4 72622592 72622592 T C GC Missense_Mutation p.T310A 0.41 tolerated(0.78) benign(0.001) TCGA-51-4080-01 4 76912043 76912043 C A SDAD1 5'UTR 0.59 TCGA-51-4080-01 4 79394605 79394605 G C FRAS1 Missense_Mutation p.L2512F 0.34 possibly_damaging(0.883) TCGA-51-4080-01 4 79394606 79394606 G T FRAS1 Missense_Mutation p.G2513W 0.35 probably_damaging(1) TCGA-51-4080-01 4 90170412 90170412 C T GPRIN3 Missense_Mutation p.V284M 0.41 tolerated(0.14) benign(0.101) TCGA-51-4080-01 4 95497089 95497089 G A PDLIM5 Intron 0.37 TCGA-51-4080-01 4 96762238 96762238 G T PDHA2 Missense_Mutation p.D313Y 0.42 deleterious(0) probably_damaging(1) TCGA-51-4080-01 5 134782580 134782580 G C C5orf20 Missense_Mutation p.N73K 0.45 tolerated_low_confidence(0.16) benign(0.003) TCGA-51-4080-01 5 140048089 140048089 T C WDR55 Splice_Site p.X127_splice 0.48 TCGA-51-4080-01 5 141334818 141334818 C T PCDH12 Missense_Mutation p.E867K 0.45 tolerated(0.53) benign(0.385) TCGA-51-4080-01 5 150502573 150502573 C T ANXA6 Splice_Site p.X380_splice 0.49 TCGA-51-4080-01 5 156535959 156535959 C A HAVCR2 Silent p.L12L 0.47 TCGA-51-4080-01 5 176310852 176310852 C T HK3 Missense_Mutation p.V658I 0.34 deleterious(0.05) probably_damaging(0.998) TCGA-51-4080-01 5 19612679 19612679 G C CDH18 Missense_Mutation p.D225E 0.43 deleterious(0) probably_damaging(0.991) TCGA-51-4080-01 5 26890021 26890021 A T CDH9 Missense_Mutation p.L479Q 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-51-4080-01 5 26916006 26916006 A G CDH9 Silent p.D85D 0.44 TCGA-51-4080-01 5 31294255 31294255 G C CDH6 Missense_Mutation p.V139L 0.47 tolerated(1) probably_damaging(0.933) TCGA-51-4080-01 5 33937805 33937805 A T RXFP3 Missense_Mutation p.R320S 0.38 deleterious(0.01) possibly_damaging(0.579) TCGA-51-4080-01 5 33984499 33984499 C A SLC45A2 Missense_Mutation p.G64C 0.50 deleterious(0) probably_damaging(1) TCGA-51-4080-01 5 35740020 35740020 G - SPEF2 Splice_Site p.X1022_splice 0.33 TCGA-51-4080-01 5 35954499 35954499 G A UGT3A1 Silent p.I459I 0.40 TCGA-51-4080-01 5 36136480 36136480 C G LMBRD2 Silent p.T226T 0.41 TCGA-51-4080-01 5 37350275 37350275 C A NUP155 Silent p.T272T 0.44 TCGA-51-4080-01 5 38962427 38962427 G A RICTOR Nonsense_Mutation p.Q569* 0.38 TCGA-51-4080-01 5 40854526 40854526 A T CARD6 Missense_Mutation p.Q1031L 0.41 tolerated(0.06) benign(0) TCGA-51-4080-01 5 41853522 41853522 T A OXCT1 Missense_Mutation p.Q138L 0.45 deleterious(0) probably_damaging(1) TCGA-51-4080-01 5 45303823 45303823 C A HCN1 Missense_Mutation p.G499V 0.41 deleterious(0) possibly_damaging(0.849) TCGA-51-4080-01 5 89703555 89703555 A G CETN3 Silent p.D38D 0.80 TCGA-51-4080-01 6 101076979 101076979 C T ASCC3 Silent p.E1429E 0.44 TCGA-51-4080-01 6 11565950 11565950 A G TMEM170B Missense_Mutation p.H50R 0.42 deleterious(0) probably_damaging(0.939) TCGA-51-4080-01 6 122752641 122752641 A C HSF2 Missense_Mutation p.K433Q 0.43 tolerated(0.45) benign(0.202) TCGA-51-4080-01 6 125233205 125233205 C A RP11-510H23.1 RNA 0.67 TCGA-51-4080-01 6 126661382 126661382 A G CENPW 5'UTR 0.36 TCGA-51-4080-01 6 133013653 133013653 G C VNN1 Silent p.L299L 0.37 TCGA-51-4080-01 6 15511634 15511634 T A JARID2 Splice_Site p.X984_splice 0.50 TCGA-51-4080-01 6 157527307 157527307 G T ARID1B Nonsense_Mutation p.G1678* 0.40 TCGA-51-4080-01 6 157527593 157527593 A C ARID1B Missense_Mutation p.D1773A 0.46 benign(0.009) TCGA-51-4080-01 6 166571969 166571969 G T T Missense_Mutation p.A381E 0.54 deleterious(0.03) benign(0.166) TCGA-51-4080-01 6 25798970 25798970 T C SLC17A1 Intron 0.45 TCGA-51-4080-01 6 25850844 25850844 C A SLC17A3 Missense_Mutation p.G279V 0.39 tolerated(0.11) benign(0.063) TCGA-51-4080-01 6 26391044 26391044 A T BTN2A2 Silent p.T322T 0.37 TCGA-51-4080-01 6 28540574 28540574 G C SCAND3 Missense_Mutation p.S1031C 0.51 tolerated(0.08) benign(0.003) TCGA-51-4080-01 6 30122115 30122115 G A TRIM10 Silent p.G359G 0.42 TCGA-51-4080-01 6 69666042 69666042 G A BAI3 Nonsense_Mutation p.W441* 0.41 TCGA-51-4080-01 6 72892798 72892798 G T RIMS1 Nonsense_Mutation p.E542* 0.64 TCGA-51-4080-01 6 73713722 73713722 G C KCNQ5 Splice_Site p.X163_splice 0.47 TCGA-51-4080-01 6 74104507 74104507 C A DDX43 5'UTR 0.70 TCGA-51-4080-01 6 89909131 89909131 C A GABRR1 Missense_Mutation p.G100C 0.38 deleterious(0) probably_damaging(1) TCGA-51-4080-01 6 90053462 90053462 T A UBE2J1 Missense_Mutation p.L15F 0.37 deleterious(0) probably_damaging(0.998) TCGA-51-4080-01 7 100466332 100466332 G T TRIP6 Silent p.G193G 0.45 TCGA-51-4080-01 7 104909439 104909439 T A SRPK2 Intron 0.50 TCGA-51-4080-01 7 107355952 107355952 G C SLC26A4 3'UTR 0.46 TCGA-51-4080-01 7 122130267 122130267 C A CADPS2 Missense_Mutation p.D574Y 0.07 deleterious(0) possibly_damaging(0.811) TCGA-51-4080-01 7 127011839 127011839 C A ZNF800 3'UTR 0.54 TCGA-51-4080-01 7 129986318 129986318 G T CPA5 5'UTR 0.45 TCGA-51-4080-01 7 131908396 131908396 G T PLXNA4 Missense_Mutation p.L663M 0.36 tolerated(0.14) possibly_damaging(0.593) TCGA-51-4080-01 7 139168179 139168179 C A KLRG2 Silent p.P70P 0.57 TCGA-51-4080-01 7 141408806 141408806 C A WEE2 Missense_Mutation p.T83N 0.45 tolerated(0.09) benign(0.312) TCGA-51-4080-01 7 142630593 142630593 G A TRPV5 5'UTR 0.48 TCGA-51-4080-01 7 143807527 143807527 G T OR2A2 Silent p.L284L 0.40 TCGA-51-4080-01 7 23309656 23309656 C T GPNMB Missense_Mutation p.P443S 0.45 tolerated(0.19) benign(0.014) TCGA-51-4080-01 7 550620 550620 G A PDGFA Silent p.P93P 0.40 TCGA-51-4080-01 7 6370367 6370367 C A FAM220A Missense_Mutation p.G140V 0.47 deleterious(0.04) benign(0.333) TCGA-51-4080-01 7 87035607 87035607 G T ABCB4 Silent p.P1168P 0.38 TCGA-51-4080-01 7 87370837 87370837 C T RUNDC3B Silent p.L208L 0.40 TCGA-51-4080-01 7 8790773 8790773 C A NXPH1 Missense_Mutation p.R64S 0.46 tolerated(0.65) benign(0.015) TCGA-51-4080-01 7 99917560 99917560 G A SPDYE3 Missense_Mutation p.A533T 0.42 deleterious(0.04) probably_damaging(0.987) TCGA-51-4080-01 8 106814722 106814722 G T ZFPM2 Silent p.T804T 0.59 TCGA-51-4080-01 8 113563053 113563053 C A CSMD3 Missense_Mutation p.V1471F 0.22 deleterious(0.02) probably_damaging(0.991) TCGA-51-4080-01 8 12957052 12957052 C T DLC1 Missense_Mutation p.D932N 0.76 deleterious(0.02) probably_damaging(0.999) TCGA-51-4080-01 8 134108523 134108523 C G TG Missense_Mutation p.A2493G 0.34 deleterious(0.01) benign(0.216) TCGA-51-4080-01 8 139144962 139144962 G T FAM135B Missense_Mutation p.N1365K 0.30 deleterious(0) probably_damaging(0.974) TCGA-51-4080-01 8 139164371 139164371 C A FAM135B Missense_Mutation p.A783S 0.57 tolerated(0.19) benign(0.017) TCGA-51-4080-01 8 143960491 143960491 C T CYP11B1 Missense_Mutation p.A118T 0.54 tolerated(0.25) possibly_damaging(0.728) TCGA-51-4080-01 8 144807990 144807990 C T FAM83H 3'UTR 0.40 TCGA-51-4080-01 8 22438093 22438093 C G PDLIM2 Intron 0.78 TCGA-51-4080-01 8 55537815 55537815 G C RP1 Missense_Mutation p.R458T 0.41 deleterious(0) probably_damaging(0.991) TCGA-51-4080-01 8 57905986 57905986 C A IMPAD1 Silent p.A53A 0.67 TCGA-51-4080-01 8 62371029 62371029 C A CLVS1 Missense_Mutation p.S302Y 0.44 deleterious_low_confidence(0.01) benign(0.01) TCGA-51-4080-01 8 71646376 71646376 G T XKR9 Missense_Mutation p.G280V 0.38 deleterious(0) probably_damaging(1) TCGA-51-4080-01 8 87683207 87683207 C A CNGB3 Missense_Mutation p.G153V 0.49 deleterious(0.02) benign(0.194) TCGA-51-4080-01 9 104385621 104385621 C A GRIN3A Missense_Mutation p.G865W 0.35 deleterious(0) probably_damaging(1) TCGA-51-4080-01 9 104385622 104385622 C A GRIN3A Silent p.V864V 0.35 TCGA-51-4080-01 9 119738461 119738461 C A ASTN2 Missense_Mutation p.W510C 0.46 deleterious_low_confidence(0) unknown(0) TCGA-51-4080-01 9 130536590 130536590 G C SH2D3C Missense_Mutation p.P65R 0.31 tolerated_low_confidence(0.31) benign(0.074) TCGA-51-4080-01 9 131094462 131094462 C G COQ4 Missense_Mutation p.R145G 0.40 tolerated(0.1) probably_damaging(0.973) TCGA-51-4080-01 9 133914549 133914549 C A LAMC3 Silent p.G399G 0.31 TCGA-51-4080-01 9 137721880 137721880 G A COL5A1 Missense_Mutation p.R1709H 0.05 unknown(0) TCGA-51-4080-01 9 139310803 139310803 G A PMPCA Missense_Mutation p.R198Q 0.39 deleterious(0.04) benign(0.426) TCGA-51-4080-01 9 139616693 139616694 - A FAM69B Frame_Shift_Ins p.P143Afs*40 0.34 TCGA-51-4080-01 9 14857664 14857664 C A FREM1 Nonsense_Mutation p.E239* 0.45 TCGA-51-4080-01 9 21971000 21971000 C A CDKN2A Nonsense_Mutation p.E120* 0.47 TCGA-51-4080-01 9 32632793 32632793 C A TAF1L Missense_Mutation p.A929S 0.36 tolerated(0.07) benign(0.063) TCGA-51-4080-01 9 37740318 37740318 G A FRMPD1 Missense_Mutation p.R598H 0.40 tolerated(0.11) benign(0.423) TCGA-51-4080-01 9 5233938 5233938 A T INSL4 3'UTR 0.35 TCGA-51-4080-01 9 6015055 6015055 A G RANBP6 Silent p.L185L 0.43 TCGA-51-4080-01 X 110970594 110970594 C - ALG13 Frame_Shift_Del p.P671Rfs*36 0.59 TCGA-51-4080-01 X 151900150 151900150 A G MAGEA12 Silent p.P217P 0.90 TCGA-51-4080-01 X 30326572 30326572 G A NR0B1 Silent p.R303R 0.87 TCGA-51-4080-01 X 37028554 37028554 C T FAM47C Missense_Mutation p.R691C 0.82 tolerated(0.23) benign(0.003) TCGA-51-4080-01 X 37029564 37029564 C A FAM47C Missense_Mutation p.D1027E 0.87 tolerated(0.29) benign(0.169) TCGA-51-4080-01 X 47920198 47920198 C T ZNF630 Missense_Mutation p.G48R 0.92 deleterious(0) probably_damaging(1) TCGA-51-4080-01 X 51488591 51488591 G A GSPT2 Silent p.L623L 0.85 TCGA-51-4080-01 X 86869560 86869560 G T KLHL4 Missense_Mutation p.Q238H 0.85 tolerated(0.23) benign(0.012) TCGA-51-4081-01 10 11504618 11504618 G A USP6NL Missense_Mutation p.A787V 0.63 tolerated_low_confidence(0.72) benign(0.001) TCGA-51-4081-01 10 124390004 124390004 G A DMBT1 Missense_Mutation p.S1879N 0.16 tolerated(0.51) possibly_damaging(0.599) TCGA-51-4081-01 10 35929155 35929155 C A FZD8 Missense_Mutation p.L401F 0.48 deleterious(0) probably_damaging(0.991) TCGA-51-4081-01 10 37508589 37508589 G C ANKRD30A Missense_Mutation p.E1261Q 0.08 tolerated(0.08) possibly_damaging(0.727) TCGA-51-4081-01 10 50960229 50960229 C T OGDHL Missense_Mutation p.G182R 0.63 tolerated(0.08) probably_damaging(0.993) TCGA-51-4081-01 10 75393825 75393825 T A MYOZ1 Splice_Site p.X168_splice 0.06 TCGA-51-4081-01 10 95372507 95372507 G A PDE6C Missense_Mutation p.V9M 0.66 deleterious(0) probably_damaging(0.956) TCGA-51-4081-01 10 97919827 97919827 A G ZNF518A RNA 0.06 TCGA-51-4081-01 11 107299903 107299903 T A CWF19L2 Missense_Mutation p.N352I 0.34 tolerated(0.07) benign(0.035) TCGA-51-4081-01 11 120998686 120998686 C A TECTA Missense_Mutation p.A667D 0.08 tolerated(0.07) possibly_damaging(0.471) TCGA-51-4081-01 11 123676802 123676802 C T OR6M1 Missense_Mutation p.E86K 0.08 tolerated(0.75) benign(0.002) TCGA-51-4081-01 11 1264922 1264922 C A MUC5B Missense_Mutation p.T2271N 0.15 probably_damaging(0.991) TCGA-51-4081-01 11 1267380 1267380 C A MUC5B Silent p.T3090T 0.39 TCGA-51-4081-01 11 26743387 26743387 G A SLC5A12 5'UTR 0.29 TCGA-51-4081-01 11 3877612 3877612 G A STIM1 Missense_Mutation p.A38T 0.04 tolerated(0.39) benign(0.002) TCGA-51-4081-01 11 48510836 48510836 C A OR4A47 Silent p.L164L 0.40 TCGA-51-4081-01 11 5275745 5275745 C A HBG2 Splice_Site p.X31_splice 0.19 TCGA-51-4081-01 11 6646574 6646574 G A DCHS1 Missense_Mutation p.T2334M 0.36 deleterious(0.03) benign(0.265) TCGA-51-4081-01 11 674723 674723 G A DEAF1 Missense_Mutation p.P439L 0.38 deleterious(0.03) possibly_damaging(0.776) TCGA-51-4081-01 11 6867073 6867073 C A OR10A5 Missense_Mutation p.P54T 0.31 tolerated(0.07) benign(0.002) TCGA-51-4081-01 11 68777382 68777382 C A MRGPRF 5'UTR 0.27 TCGA-51-4081-01 11 70260667 70260667 A G CTTN Missense_Mutation p.Y104C 0.28 deleterious(0) probably_damaging(0.999) TCGA-51-4081-01 11 75438537 75438538 CA T MOGAT2 Frame_Shift_Del p.H110Lfs*30 0.32 TCGA-51-4081-01 11 76922973 76922973 C T MYO7A Silent p.F2115F 0.05 TCGA-51-4081-01 12 100042517 100042517 G A FAM71C Missense_Mutation p.G189R 0.28 tolerated(0.15) benign(0.078) TCGA-51-4081-01 12 110340868 110340868 C T TCHP Nonsense_Mutation p.Q13* 0.18 TCGA-51-4081-01 12 11082904 11082904 G A PRH2 Splice_Site p.X34_splice 0.33 TCGA-51-4081-01 12 123444664 123444664 T A ABCB9 Missense_Mutation p.H40L 0.18 deleterious(0.03) benign(0.082) TCGA-51-4081-01 12 13526028 13526028 G A C12orf36 3'UTR 0.33 TCGA-51-4081-01 12 416829 416829 G A KDM5A Missense_Mutation p.P1241S 0.46 deleterious(0) possibly_damaging(0.862) TCGA-51-4081-01 12 53473103 53473103 C G SPRYD3 Silent p.R5R 0.67 TCGA-51-4081-01 12 54912482 54912482 C A NCKAP1L Missense_Mutation p.F462L 0.55 tolerated(0.2) possibly_damaging(0.734) TCGA-51-4081-01 12 56733895 56733895 C T IL23A 3'UTR 0.13 TCGA-51-4081-01 12 77220766 77220766 G C ZDHHC17 Missense_Mutation p.D326H 0.05 deleterious(0.03) benign(0.439) TCGA-51-4081-01 12 85257356 85257356 C A SLC6A15 Missense_Mutation p.M560I 0.55 deleterious(0) possibly_damaging(0.779) TCGA-51-4081-01 13 33704002 33704002 G T STARD13 Missense_Mutation p.A271D 0.34 tolerated(0.08) benign(0.003) TCGA-51-4081-01 13 60566683 60566683 G A DIAPH3 Missense_Mutation p.T350I 0.11 tolerated(0.13) probably_damaging(0.998) TCGA-51-4081-01 14 105406002 105406002 G T AHNAK2 Missense_Mutation p.S5262R 0.33 benign(0.006) TCGA-51-4081-01 14 20612368 20612368 A T OR4N5 Silent p.V158V 0.30 TCGA-51-4081-01 14 20665821 20665821 A G OR11G2 Missense_Mutation p.I109M 0.38 deleterious(0.01) possibly_damaging(0.817) TCGA-51-4081-01 14 21360032 21360032 C A RNASE3 Missense_Mutation p.R63S 0.45 tolerated(0.37) possibly_damaging(0.535) TCGA-51-4081-01 14 23342656 23342656 G T LRP10 Splice_Site p.X72_splice 0.34 TCGA-51-4081-01 14 23442566 23442566 G T AJUBA 3'UTR 0.62 TCGA-51-4081-01 14 24524479 24524479 C A LRRC16B Silent p.R189R 0.12 TCGA-51-4081-01 14 59970688 59970688 G T JKAMP Missense_Mutation p.L278F 0.35 tolerated(0.66) probably_damaging(0.968) TCGA-51-4081-01 14 73659524 73659524 C T PSEN1 Missense_Mutation p.L241F 0.46 deleterious(0) probably_damaging(0.966) TCGA-51-4081-01 14 74874667 74874667 T C SYNDIG1L Missense_Mutation p.E148G 0.08 deleterious(0) probably_damaging(0.996) TCGA-51-4081-01 14 92922946 92922946 G A SLC24A4 Missense_Mutation p.V417M 0.39 tolerated(0.28) benign(0.002) TCGA-51-4081-01 15 25427554 25427554 G T SNORD115-6 3'Flank 0.34 TCGA-51-4081-01 15 25940142 25940142 C T ATP10A Missense_Mutation p.S971N 0.32 deleterious(0.05) benign(0.015) TCGA-51-4081-01 15 28377918 28377918 C T HERC2 Missense_Mutation p.A4097T 0.03 probably_damaging(0.962) TCGA-51-4081-01 15 48058151 48058151 A G SEMA6D Missense_Mutation p.S505G 0.35 tolerated(0.14) benign(0.014) TCGA-51-4081-01 15 48707783 48707783 C A FBN1 Missense_Mutation p.E2667D 0.38 benign(0.009) TCGA-51-4081-01 15 50904852 50904852 T C TRPM7 Missense_Mutation p.M649V 0.42 deleterious(0) benign(0.217) TCGA-51-4081-01 15 54307273 54307273 G A UNC13C Missense_Mutation p.G725S 0.40 deleterious_low_confidence(0.03) possibly_damaging(0.606) TCGA-51-4081-01 15 66793358 66793358 T C RPL4 Silent p.E254E 0.31 TCGA-51-4081-01 15 74327406 74327406 A G PML Intron 0.34 TCGA-51-4081-01 15 83395786 83395786 C T AC105339.2 5'Flank 0.45 TCGA-51-4081-01 15 89401084 89401084 C T ACAN Silent p.S1756S 0.04 TCGA-51-4081-01 15 90347586 90347586 C T ANPEP Silent p.L359L 0.42 TCGA-51-4081-01 16 1391391 1391391 A C BAIAP3 Missense_Mutation p.K246T 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-51-4081-01 16 49557637 49557637 G T ZNF423 Silent p.A1241A 0.14 TCGA-51-4081-01 16 55364220 55364220 C A IRX6 3'UTR 0.42 TCGA-51-4081-01 16 614894 614894 C - C16orf11 Frame_Shift_Del p.L436Cfs*23 0.33 TCGA-51-4081-01 16 88713162 88713162 C A CYBA Splice_Site p.X96_splice 0.09 TCGA-51-4081-01 17 10433387 10433387 G T MYH2 Missense_Mutation p.A901D 0.45 tolerated(0.08) benign(0.044) TCGA-51-4081-01 17 11583141 11583141 G A DNAH9 Missense_Mutation p.D1141N 0.04 benign(0.126) TCGA-51-4081-01 17 29556400 29556400 C G NF1 Missense_Mutation p.L923V 0.41 tolerated(0.51) probably_damaging(0.952) TCGA-51-4081-01 17 3417227 3417227 G A TRPV3 Missense_Mutation p.P787L 0.41 tolerated_low_confidence(0.2) benign(0.02) TCGA-51-4081-01 17 41113248 41113248 C G AARSD1 Missense_Mutation p.D98H 0.37 deleterious(0) probably_damaging(0.999) TCGA-51-4081-01 17 51901248 51901248 A T KIF2B Missense_Mutation p.Q285L 0.34 deleterious(0.01) possibly_damaging(0.805) TCGA-51-4081-01 17 60642414 60642414 G A TLK2 Missense_Mutation p.R295K 0.37 deleterious(0) probably_damaging(1) TCGA-51-4081-01 17 61949800 61949800 A C CSH2 Intron 0.35 TCGA-51-4081-01 17 62007148 62007148 G T CD79B Silent p.I178I 0.40 TCGA-51-4081-01 17 71281750 71281750 C A CDC42EP4 Missense_Mutation p.R297L 0.24 deleterious(0.01) benign(0.196) TCGA-51-4081-01 17 7577120 7577120 C A TP53 Missense_Mutation p.R273L 0.37 deleterious(0) probably_damaging(0.993) TCGA-51-4081-01 17 7578469 7578469 C A TP53 Missense_Mutation p.G154V 0.41 deleterious(0) probably_damaging(0.961) TCGA-51-4081-01 17 76989728 76989728 G T CANT1 Silent p.V370V 0.37 TCGA-51-4081-01 17 9823009 9823009 C T GAS7 Missense_Mutation p.M384I 0.12 tolerated(0.53) benign(0.004) TCGA-51-4081-01 18 28659823 28659823 T C DSC2 Silent p.A551A 0.34 TCGA-51-4081-01 18 47107935 47107935 G A LIPG Missense_Mutation p.R315H 0.38 deleterious(0.01) probably_damaging(1) TCGA-51-4081-01 18 50278668 50278668 G A DCC Silent p.E112E 0.30 TCGA-51-4081-01 18 61654442 61654442 C A SERPINB8 Missense_Mutation p.P352H 0.07 deleterious(0) probably_damaging(1) TCGA-51-4081-01 19 10602326 10602326 C A KEAP1 Missense_Mutation p.V418L 0.30 tolerated(0.05) benign(0.005) TCGA-51-4081-01 19 14273821 14273821 G A LPHN1 Silent p.D269D 0.38 TCGA-51-4081-01 19 20278150 20278150 C A ZNF486 Missense_Mutation p.P4H 0.26 tolerated_low_confidence(0.13) benign(0.133) TCGA-51-4081-01 19 30936608 30936608 C G ZNF536 Missense_Mutation p.D713E 0.26 tolerated(0.17) probably_damaging(0.99) TCGA-51-4081-01 19 34884949 34884949 G A GPI Missense_Mutation p.R358H 0.15 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-51-4081-01 19 36357069 36357069 A G KIRREL2 Missense_Mutation p.N601S 0.29 deleterious(0) probably_damaging(0.99) TCGA-51-4081-01 19 41627406 41627406 C A CYP2F1 Silent p.S176S 0.32 TCGA-51-4081-01 19 50512642 50512642 C G VRK3 Missense_Mutation p.G47A 0.36 tolerated(0.1) probably_damaging(0.969) TCGA-51-4081-01 19 53854270 53854270 A G ZNF845 Silent p.T114T 0.34 TCGA-51-4081-01 19 55255406 55255406 C A KIR2DL3 Missense_Mutation p.N178K 0.82 tolerated(0.06) benign(0.035) TCGA-51-4081-01 19 55399650 55399650 T A FCAR Missense_Mutation p.L213H 0.29 deleterious(0) probably_damaging(1) TCGA-51-4081-01 19 57286632 57286632 G A ZIM2 Silent p.T336T 0.42 TCGA-51-4081-01 19 57640572 57640572 G T USP29 Missense_Mutation p.V177L 0.40 tolerated(0.82) benign(0) TCGA-51-4081-01 1 104120396 104120396 T A AMY2B Nonsense_Mutation p.Y425* 0.11 TCGA-51-4081-01 1 144892268 144892268 A T PDE4DIP Intron 0.08 TCGA-51-4081-01 1 147131642 147131642 C T ACP6 Splice_Site p.X117_splice 0.43 TCGA-51-4081-01 1 152325922 152325922 T C FLG2 Missense_Mutation p.H1447R 0.37 benign(0.296) TCGA-51-4081-01 1 154931905 154931905 C A PYGO2 Missense_Mutation p.G191C 0.13 deleterious(0.01) probably_damaging(0.979) TCGA-51-4081-01 1 158590100 158590100 C A SPTA1 Missense_Mutation p.A2093S 0.44 tolerated(1) benign(0.077) TCGA-51-4081-01 1 158590101 158590101 C A SPTA1 Silent p.L2092L 0.44 TCGA-51-4081-01 1 161654678 161654678 A G RPL31P11 RNA 0.41 TCGA-51-4081-01 1 179528818 179528818 T G NPHS2 Missense_Mutation p.H177P 0.21 deleterious(0) probably_damaging(0.996) TCGA-51-4081-01 1 200017366 200017366 C A NR5A2 Missense_Mutation p.A177D 0.40 deleterious(0) probably_damaging(0.916) TCGA-51-4081-01 1 204199696 204199696 C T PLEKHA6 Missense_Mutation p.V810M 0.48 deleterious(0) possibly_damaging(0.495) TCGA-51-4081-01 1 243328002 243328002 C A CEP170 Missense_Mutation p.S1087I 0.31 deleterious(0) possibly_damaging(0.864) TCGA-51-4081-01 1 247751962 247751962 T A OR2G2 Missense_Mutation p.L101M 0.31 tolerated(0.06) benign(0.004) TCGA-51-4081-01 1 26360343 26360343 C G EXTL1 Missense_Mutation p.H559D 0.64 deleterious(0) probably_damaging(1) TCGA-51-4081-01 1 27094433 27094440 ACCTCTGG - ARID1A Frame_Shift_Del p.D1050Sfs*52 0.54 TCGA-51-4081-01 1 36755344 36755344 C G THRAP3 Missense_Mutation p.S575C 0.56 tolerated(0.08) probably_damaging(0.992) TCGA-51-4081-01 1 46976739 46976739 C A DMBX1 Missense_Mutation p.Q156K 0.53 tolerated(0.61) benign(0.047) TCGA-51-4081-01 20 16253791 16253791 C A KIF16B 3'UTR 0.36 TCGA-51-4081-01 20 23334882 23334882 C A NXT1 Missense_Mutation p.S68R 0.09 deleterious(0) probably_damaging(0.998) TCGA-51-4081-01 20 24523765 24523765 T A SYNDIG1 Missense_Mutation p.L11Q 0.08 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-51-4081-01 20 25028754 25028754 T G ACSS1 Missense_Mutation p.D133A 0.34 deleterious(0) probably_damaging(0.951) TCGA-51-4081-01 20 2638918 2638918 A G NOP56 Missense_Mutation p.H588R 0.33 tolerated_low_confidence(0.1) benign(0.001) TCGA-51-4081-01 20 48523097 48523097 A C SPATA2 Missense_Mutation p.S208A 0.37 tolerated(1) benign(0.004) TCGA-51-4081-01 20 57769016 57769016 G T ZNF831 Missense_Mutation p.G981V 0.43 deleterious(0.04) benign(0.446) TCGA-51-4081-01 20 6022379 6022379 G T LRRN4 Missense_Mutation p.H504Q 0.31 tolerated(1) benign(0) TCGA-51-4081-01 20 62065210 62065210 T C KCNQ2 Missense_Mutation p.H357R 0.39 tolerated(0.53) benign(0.003) TCGA-51-4081-01 22 18065400 18065400 C T SLC25A18 Missense_Mutation p.R91W 0.18 deleterious(0.01) benign(0.069) TCGA-51-4081-01 22 18389608 18389608 G A MICAL3 5'UTR 0.55 TCGA-51-4081-01 22 21193021 21193021 T C PI4KA Splice_Site p.X53_splice 0.12 TCGA-51-4081-01 22 21989177 21989177 G A CCDC116 Silent p.E275E 0.15 TCGA-51-4081-01 22 23114943 23114943 G T IGLV3-12 Missense_Mutation p.R72L 0.62 deleterious(0.01) possibly_damaging(0.85) TCGA-51-4081-01 22 32108241 32108241 C T PRR14L Missense_Mutation p.G1862R 0.63 deleterious(0.03) probably_damaging(0.975) TCGA-51-4081-01 22 42018068 42018068 A G XRCC6 Silent p.Q20Q 0.30 TCGA-51-4081-01 2 100915388 100915388 C G LONRF2 Silent p.T462T 0.26 TCGA-51-4081-01 2 130832979 130832979 T C POTEF Missense_Mutation p.N689S 0.52 deleterious_low_confidence(0.01) possibly_damaging(0.525) TCGA-51-4081-01 2 155098615 155098615 G A GALNT13 Nonsense_Mutation p.W128* 0.50 TCGA-51-4081-01 2 15536550 15536550 C T NBAS Missense_Mutation p.E1041K 0.38 tolerated(0.07) possibly_damaging(0.891) TCGA-51-4081-01 2 163059394 163059394 G A FAP Missense_Mutation p.T404I 0.20 deleterious(0) probably_damaging(1) TCGA-51-4081-01 2 1652640 1652640 A G PXDN Missense_Mutation p.F971S 0.14 deleterious(0) probably_damaging(1) TCGA-51-4081-01 2 175436644 175436644 T C WIPF1 Missense_Mutation p.T297A 0.63 tolerated(0.12) benign(0.013) TCGA-51-4081-01 2 178098957 178098957 G A NFE2L2 Missense_Mutation p.L30F 0.58 deleterious(0) probably_damaging(1) TCGA-51-4081-01 2 179489294 179489294 T C TTN Missense_Mutation p.R14905G 0.59 TCGA-51-4081-01 2 179579804 179579804 C A TTN Silent p.L8703L 0.68 TCGA-51-4081-01 2 220405116 220405116 C T CHPF Silent p.P439P 0.65 TCGA-51-4081-01 2 70015273 70015273 G T ANXA4 Missense_Mutation p.G33C 0.30 deleterious(0) probably_damaging(0.995) TCGA-51-4081-01 2 73303202 73303202 G C RAB11FIP5 Silent p.L559L 0.39 TCGA-51-4081-01 2 73718019 73718019 A G ALMS1 Missense_Mutation p.D2977G 0.33 benign(0.016) TCGA-51-4081-01 2 90060889 90060889 C T IGKV6D-21 Missense_Mutation p.S79L 0.60 deleterious(0.05) benign(0.186) TCGA-51-4081-01 2 99938551 99938551 G T TXNDC9 Missense_Mutation p.P144T 0.28 deleterious(0) probably_damaging(1) TCGA-51-4081-01 3 113379185 113379185 C G KIAA2018 Missense_Mutation p.Q448H 0.25 benign(0.043) TCGA-51-4081-01 3 115342472 115342472 G T GAP43 5'UTR 0.19 TCGA-51-4081-01 3 120469462 120469462 G A GTF2E1 Silent p.V21V 0.59 TCGA-51-4081-01 3 125271293 125271293 C A OSBPL11 Missense_Mutation p.K462N 0.26 tolerated(0.48) benign(0.002) TCGA-51-4081-01 3 127379841 127379841 G T PODXL2 Missense_Mutation p.D324Y 0.06 tolerated(0.08) possibly_damaging(0.759) TCGA-51-4081-01 3 130685990 130685990 T G ATP2C1 Missense_Mutation p.V409G 0.28 deleterious(0.01) possibly_damaging(0.551) TCGA-51-4081-01 3 134873094 134873094 C G EPHB1 Missense_Mutation p.D466E 0.29 tolerated(0.87) benign(0.327) TCGA-51-4081-01 3 155571667 155571667 C T SLC33A1 Silent p.L40L 0.12 TCGA-51-4081-01 3 155654155 155654155 G T GMPS Silent p.P612P 0.28 TCGA-51-4081-01 3 158317959 158317959 G T MLF1 Nonsense_Mutation p.E220* 0.57 TCGA-51-4081-01 3 160253640 160253641 - A KPNA4 Frame_Shift_Ins p.E54* 0.23 TCGA-51-4081-01 3 172227050 172227050 G A TNFSF10 Silent p.H125H 0.05 TCGA-51-4081-01 3 183585724 183585724 C A PARL Nonsense_Mutation p.E84* 0.28 TCGA-51-4081-01 3 193023381 193023381 G T ATP13A5 Missense_Mutation p.T882K 0.58 deleterious(0.01) benign(0.185) TCGA-51-4081-01 3 39176662 39176662 C A TTC21A Missense_Mutation p.P988T 0.66 deleterious(0.01) probably_damaging(0.982) TCGA-51-4081-01 3 39176663 39176663 C A TTC21A Missense_Mutation p.P988Q 0.66 deleterious(0) probably_damaging(0.993) TCGA-51-4081-01 3 39229489 39229489 A G XIRP1 Missense_Mutation p.V483A 0.08 deleterious(0) possibly_damaging(0.593) TCGA-51-4081-01 3 44438258 44438258 C G TCAIM Missense_Mutation p.R273G 0.07 tolerated(0.22) benign(0.152) TCGA-51-4081-01 3 48607725 48607725 C T COL7A1 Missense_Mutation p.G2475R 0.61 probably_damaging(1) TCGA-51-4081-01 3 62357315 62357315 G C FEZF2 Missense_Mutation p.R294G 0.60 deleterious(0) benign(0.045) TCGA-51-4081-01 4 109663571 109663571 A G ETNPPL 3'UTR 0.42 TCGA-51-4081-01 4 113524783 113524783 G A C4orf21 Missense_Mutation p.S958L 0.39 tolerated(0.29) benign(0.015) TCGA-51-4081-01 4 113524786 113524786 C T C4orf21 Missense_Mutation p.S957N 0.38 tolerated(0.71) possibly_damaging(0.625) TCGA-51-4081-01 4 134071539 134071539 G A PCDH10 Missense_Mutation p.E82K 0.25 deleterious(0) probably_damaging(0.994) TCGA-51-4081-01 4 139966421 139966421 C T CCRN4L Silent p.T363T 0.32 TCGA-51-4081-01 4 153247367 153247367 G A FBXW7 Nonsense_Mutation p.R479* 0.36 TCGA-51-4081-01 4 164272519 164272519 G T NPY5R Missense_Mutation p.S365I 0.31 tolerated(0.22) possibly_damaging(0.765) TCGA-51-4081-01 4 177032751 177032751 T A WDR17 Missense_Mutation p.V31E 0.34 deleterious(0) probably_damaging(0.997) TCGA-51-4081-01 4 177098633 177098633 A T WDR17 Missense_Mutation p.D1226V 0.16 tolerated(0.12) benign(0.147) TCGA-51-4081-01 4 177100779 177100779 C A WDR17 3'UTR 0.32 TCGA-51-4081-01 4 177113789 177113789 T C SPATA4 Missense_Mutation p.K226R 0.34 tolerated(0.28) probably_damaging(0.962) TCGA-51-4081-01 4 25665869 25665869 G T SLC34A2 Missense_Mutation p.G99V 0.10 tolerated(1) benign(0.013) TCGA-51-4081-01 4 26483565 26483565 G C CCKAR Missense_Mutation p.P328A 0.08 deleterious(0) probably_damaging(1) TCGA-51-4081-01 4 44450422 44450422 G A KCTD8 Missense_Mutation p.S40L 0.58 tolerated(0.19) benign(0.019) TCGA-51-4081-01 4 52942956 52942956 G A SPATA18 Missense_Mutation p.S257N 0.20 tolerated(0.08) possibly_damaging(0.498) TCGA-51-4081-01 4 56890686 56890686 A T CEP135 Missense_Mutation p.M1114L 0.18 tolerated(0.93) benign(0.002) TCGA-51-4081-01 5 1038076 1038076 G C NKD2 Missense_Mutation p.R315P 0.34 deleterious(0) probably_damaging(1) TCGA-51-4081-01 5 140475948 140475948 C T PCDHB2 Missense_Mutation p.A525V 0.66 deleterious_low_confidence(0.05) benign(0.259) TCGA-51-4081-01 5 140594268 140594268 A G PCDHB13 Silent p.K191K 0.55 TCGA-51-4081-01 5 140755620 140755620 C A PCDHGA6 Missense_Mutation p.T657N 0.55 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-51-4081-01 5 143586805 143586806 - T KCTD16 Frame_Shift_Ins p.G177Wfs*35 0.45 TCGA-51-4081-01 5 169502994 169502994 T A DOCK2 Missense_Mutation p.V1591E 0.67 deleterious(0.01) benign(0.048) TCGA-51-4081-01 5 22142462 22142462 G T CDH12 Intron 0.58 TCGA-51-4081-01 5 3601130 3601130 C G IRX1 Missense_Mutation p.I473M 0.27 deleterious(0) probably_damaging(0.924) TCGA-51-4081-01 5 36105236 36105236 T A LMBRD2 Missense_Mutation p.D654V 0.24 deleterious(0.01) possibly_damaging(0.779) TCGA-51-4081-01 5 41181646 41181646 C A C6 Missense_Mutation p.D248Y 0.24 deleterious(0) probably_damaging(0.994) TCGA-51-4081-01 5 42719278 42719278 C G GHR Missense_Mutation p.Q557E 0.58 tolerated(1) benign(0.001) TCGA-51-4081-01 5 45262556 45262556 C A HCN1 Missense_Mutation p.A714S 0.48 tolerated_low_confidence(0.85) benign(0.001) TCGA-51-4081-01 5 61690317 61690317 T A DIMT1 Silent p.L188L 0.64 TCGA-51-4081-01 5 7706904 7706904 T C ADCY2 Missense_Mutation p.V386A 0.22 deleterious(0) probably_damaging(0.998) TCGA-51-4081-01 5 840566 840566 C A ZDHHC11 Intron 0.06 TCGA-51-4081-01 6 112537599 112537599 G C LAMA4 Missense_Mutation p.N89K 0.40 tolerated(0.05) benign(0.373) TCGA-51-4081-01 6 121481233 121481233 G C TBC1D32 Missense_Mutation p.P899R 0.20 deleterious(0.01) benign(0.238) TCGA-51-4081-01 6 150239492 150239492 G T RAET1G Silent p.A220A 0.25 TCGA-51-4081-01 6 151281446 151281446 G T MTHFD1L Missense_Mutation p.M613I 0.17 deleterious(0) probably_damaging(0.924) TCGA-51-4081-01 6 151281447 151281447 G T MTHFD1L Missense_Mutation p.A614S 0.17 deleterious(0.03) possibly_damaging(0.785) TCGA-51-4081-01 6 151331065 151331065 G A MTHFD1L Missense_Mutation p.A746T 0.06 deleterious(0) probably_damaging(0.992) TCGA-51-4081-01 6 152163791 152163791 A T ESR1 Missense_Mutation p.K171M 0.48 deleterious(0.04) possibly_damaging(0.838) TCGA-51-4081-01 6 152163792 152163792 G A ESR1 Silent p.K171K 0.47 TCGA-51-4081-01 6 152674504 152674504 G A SYNE1 Missense_Mutation p.S3716F 0.21 benign(0.004) TCGA-51-4081-01 6 155153569 155153569 C T SCAF8 Silent p.I952I 0.41 TCGA-51-4081-01 6 170058390 170058390 C G WDR27 Missense_Mutation p.A462P 0.15 tolerated(0.38) benign(0.055) TCGA-51-4081-01 6 51524724 51524724 C A PKHD1 Missense_Mutation p.M3400I 0.56 tolerated(1) benign(0.001) TCGA-51-4081-01 6 51524725 51524725 A G PKHD1 Missense_Mutation p.M3400T 0.56 tolerated(0.16) benign(0.035) TCGA-51-4081-01 6 76580384 76580384 G C MYO6 Silent p.L655L 0.47 TCGA-51-4081-01 6 90385227 90385237 CTGTCGGACGA - MDN1 Frame_Shift_Del p.L4236Pfs*9 0.35 TCGA-51-4081-01 6 96651565 96651565 C A FUT9 Missense_Mutation p.F178L 0.53 tolerated(0.3) benign(0.001) TCGA-51-4081-01 7 100403230 100403230 C T EPHB4 Nonsense_Mutation p.W857* 0.03 TCGA-51-4081-01 7 100607832 100607832 C A MUC3A Missense_Mutation p.T660N 0.04 tolerated(0.1) benign(0.324) TCGA-51-4081-01 7 112579794 112579794 C A C7orf60 Silent p.G4G 0.32 TCGA-51-4081-01 7 134253073 134253073 G T AKR1B15 Missense_Mutation p.S105I 0.03 deleterious(0) probably_damaging(0.997) TCGA-51-4081-01 7 135309982 135309982 C G NUP205 Missense_Mutation p.S1517C 0.03 tolerated(0.25) benign(0.029) TCGA-51-4081-01 7 143141036 143141036 A T TAS2R60 Missense_Mutation p.H164L 0.33 tolerated(0.05) benign(0.096) TCGA-51-4081-01 7 144062298 144062298 G A ARHGEF5 Missense_Mutation p.D846N 0.29 tolerated(0.22) benign(0.026) TCGA-51-4081-01 7 155090172 155090172 G T INSIG1 Silent p.A59A 0.50 TCGA-51-4081-01 7 4277338 4277338 A C SDK1 Missense_Mutation p.S2018R 0.33 deleterious(0.04) possibly_damaging(0.836) TCGA-51-4081-01 7 4947205 4947205 A G MMD2 Missense_Mutation p.L212P 0.30 deleterious(0) probably_damaging(0.998) TCGA-51-4081-01 7 70597840 70597840 G T WBSCR17 Missense_Mutation p.V18L 0.46 tolerated_low_confidence(0.09) benign(0.025) TCGA-51-4081-01 7 70885948 70885948 C G WBSCR17 Silent p.P273P 0.31 TCGA-51-4081-01 7 796505 796505 C A HEATR2 Silent p.P448P 0.37 TCGA-51-4081-01 7 87005147 87005147 C T CROT Nonsense_Mutation p.R280* 0.04 TCGA-51-4081-01 7 89937162 89937162 G T C7orf63 Silent p.T848T 0.29 TCGA-51-4081-01 7 96650141 96650141 C G DLX5 Missense_Mutation p.W259C 0.34 deleterious(0) probably_damaging(0.977) TCGA-51-4081-01 7 99695279 99695279 C A MCM7 Missense_Mutation p.V359F 0.39 deleterious(0) probably_damaging(0.993) TCGA-51-4081-01 8 113303905 113303905 A G CSMD3 Silent p.P2936P 0.31 TCGA-51-4081-01 8 117671117 117671117 C A EIF3H Missense_Mutation p.R131L 0.43 tolerated(0.79) benign(0.392) TCGA-51-4081-01 8 133144497 133144497 A T KCNQ3 Missense_Mutation p.V605E 0.32 deleterious(0.05) benign(0.274) TCGA-51-4081-01 8 140744269 140744269 G A TRAPPC9 Missense_Mutation p.H1176Y 0.57 deleterious(0.02) benign(0.027) TCGA-51-4081-01 8 144995111 144995111 T G PLEC Missense_Mutation p.I3097L 0.10 benign(0.241) TCGA-51-4081-01 8 1808301 1808301 C T ARHGEF10 Silent p.P144P 0.25 TCGA-51-4081-01 8 22861981 22861981 G A RHOBTB2 Missense_Mutation p.V34I 0.23 tolerated(0.19) possibly_damaging(0.905) TCGA-51-4081-01 8 53074075 53074075 G T ST18 Missense_Mutation p.S485Y 0.31 deleterious(0) benign(0.367) TCGA-51-4081-01 8 55537321 55537321 T G RP1 Silent p.S293S 0.05 TCGA-51-4081-01 8 72968009 72968009 G T TRPA1 Missense_Mutation p.P426T 0.39 tolerated(0.44) possibly_damaging(0.711) TCGA-51-4081-01 8 76463627 76463627 A T HNF4G Silent p.V119V 0.43 TCGA-51-4081-01 9 103348698 103348698 G T MURC Nonsense_Mutation p.E354* 0.19 TCGA-51-4081-01 9 116769663 116769663 A G ZNF618 Missense_Mutation p.K163R 0.48 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-51-4081-01 9 117139707 117139707 C T AKNA Missense_Mutation p.G127E 0.53 tolerated(1) benign(0.002) TCGA-51-4081-01 9 117188587 117188587 T C DFNB31 Missense_Mutation p.K357R 0.20 tolerated(0.36) benign(0.161) TCGA-51-4081-01 9 127088623 127088623 G C NEK6 Missense_Mutation p.Q174H 0.51 tolerated(0.18) benign(0.019) TCGA-51-4081-01 9 137774436 137774436 G T FCN2 Silent p.L55L 0.17 TCGA-51-4081-01 9 139909524 139909524 T A ABCA2 Silent p.P1241P 0.32 TCGA-51-4081-01 9 72046088 72046088 G T APBA1 3'UTR 0.54 TCGA-51-4081-01 X 138680615 138680615 A G MCF2 Missense_Mutation p.Y703H 0.74 deleterious(0) probably_damaging(1) TCGA-51-4081-01 X 142716936 142716936 G T SLITRK4 Silent p.S663S 0.77 TCGA-51-4081-01 X 142967357 142967357 C T UBE2NL Missense_Mutation p.T52I 0.72 tolerated(0.54) benign(0.017) TCGA-51-4081-01 X 142967583 142967583 G A UBE2NL Silent p.V127V 0.89 TCGA-51-4081-01 X 16711326 16711354 TTTGTTCTCCGGTAGCACTGAGCTGAAAA - CTPS2 Splice_Site p.X186_splice 0.41 TCGA-51-4081-01 X 31089811 31089811 C A FTHL17 Missense_Mutation p.R87M 0.70 deleterious(0.02) benign(0.063) TCGA-51-4081-01 X 3242456 3242456 G T MXRA5 Missense_Mutation p.Q424K 0.66 tolerated(0.11) benign(0.214) TCGA-51-6867-01 10 101605456 101605456 G C ABCC2 Missense_Mutation p.G1355R 0.23 tolerated(0.14) probably_damaging(0.966) TCGA-51-6867-01 10 101731876 101731876 C T DNMBP Silent p.E2E 0.44 TCGA-51-6867-01 10 104176345 104176345 G T PSD Missense_Mutation p.L151M 0.21 deleterious_low_confidence(0.03) probably_damaging(0.916) TCGA-51-6867-01 10 105330636 105330636 C A NEURL1 Silent p.I31I 0.16 TCGA-51-6867-01 10 105484034 105484034 G A SH3PXD2A Missense_Mutation p.P131L 0.45 deleterious(0) probably_damaging(0.948) TCGA-51-6867-01 10 105642569 105642569 A T OBFC1 Missense_Mutation p.I327N 0.07 deleterious(0) probably_damaging(0.988) TCGA-51-6867-01 10 115413806 115413806 C A NRAP Missense_Mutation p.V147F 0.53 deleterious(0.01) benign(0.07) TCGA-51-6867-01 10 116417722 116417722 G A ABLIM1 Missense_Mutation p.P80S 0.45 tolerated(0.13) benign(0.001) TCGA-51-6867-01 10 119026266 119026266 T A SLC18A2 Missense_Mutation p.S338R 0.23 deleterious(0.01) probably_damaging(0.934) TCGA-51-6867-01 10 119044114 119044114 G C PDZD8 Nonsense_Mutation p.Y710* 0.04 TCGA-51-6867-01 10 120353848 120353848 G A PRLHR Silent p.L303L 0.30 TCGA-51-6867-01 10 131761995 131761995 G T EBF3 Missense_Mutation p.T13K 0.28 tolerated_low_confidence(0.09) benign(0.067) TCGA-51-6867-01 10 134144952 134144952 C - LRRC27 5'Flank 0.21 TCGA-51-6867-01 10 30748334 30748334 G C MAP3K8 Missense_Mutation p.E393Q 0.47 tolerated(0.05) probably_damaging(0.998) TCGA-51-6867-01 10 38667068 38667068 T C HSD17B7P2 RNA 0.33 TCGA-51-6867-01 10 50835827 50835827 G C CHAT Silent p.V369V 0.38 TCGA-51-6867-01 10 51808071 51808071 G C RP11-324H6.5 RNA 0.05 TCGA-51-6867-01 10 7218074 7218074 T C SFMBT2 Missense_Mutation p.Q621R 0.44 tolerated(0.44) probably_damaging(0.996) TCGA-51-6867-01 10 75231350 75231350 C G PPP3CB Missense_Mutation p.R182T 0.15 tolerated(0.21) benign(0.003) TCGA-51-6867-01 10 8051122 8051122 C T TAF3 Silent p.P799P 0.60 TCGA-51-6867-01 10 82043795 82043795 C G MAT1A Splice_Site p.X57_splice 0.16 TCGA-51-6867-01 10 95372534 95372534 C T PDE6C Nonsense_Mutation p.Q18* 0.19 TCGA-51-6867-01 10 98084118 98084118 C A DNTT Missense_Mutation p.S282R 0.28 tolerated(0.16) benign(0.35) TCGA-51-6867-01 10 98084119 98084119 C A DNTT Missense_Mutation p.L283M 0.26 deleterious(0.04) probably_damaging(0.971) TCGA-51-6867-01 11 118502104 118502104 G A PHLDB1 Missense_Mutation p.V670I 0.21 tolerated(0.38) benign(0) TCGA-51-6867-01 11 119027714 119027714 C T ABCG4 Missense_Mutation p.P353L 0.05 tolerated(0.6) benign(0.003) TCGA-51-6867-01 11 119045852 119045852 A G NLRX1 Missense_Mutation p.T514A 0.21 tolerated(0.62) benign(0.001) TCGA-51-6867-01 11 123483512 123483512 G A GRAMD1B Missense_Mutation p.V512M 0.21 deleterious(0) probably_damaging(0.999) TCGA-51-6867-01 11 124294417 124294417 C A OR8B4 Missense_Mutation p.M117I 0.34 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-51-6867-01 11 128680973 128680973 G T FLI1 3'UTR 0.51 TCGA-51-6867-01 11 129805088 129805088 C A PRDM10 Missense_Mutation p.W355C 0.52 deleterious(0) probably_damaging(0.998) TCGA-51-6867-01 11 132016342 132016342 C G NTM Missense_Mutation p.P112A 0.49 tolerated(0.11) probably_damaging(0.971) TCGA-51-6867-01 11 133789851 133789851 A C IGSF9B Missense_Mutation p.S1257A 0.61 tolerated_low_confidence(0.19) benign(0.005) TCGA-51-6867-01 11 14989244 14989244 G A CALCA 3'Flank 0.16 TCGA-51-6867-01 11 16872763 16872763 C A PLEKHA7 Missense_Mutation p.R224L 0.54 deleterious(0) possibly_damaging(0.499) TCGA-51-6867-01 11 17464298 17464298 G T ABCC8 Silent p.L533L 0.13 TCGA-51-6867-01 11 17464365 17464365 A T ABCC8 Missense_Mutation p.L511Q 0.29 deleterious(0) probably_damaging(0.998) TCGA-51-6867-01 11 17741507 17741507 G A MYOD1 Missense_Mutation p.E60K 0.09 deleterious(0.04) probably_damaging(0.997) TCGA-51-6867-01 11 22397610 22397610 A G SLC17A6 Silent p.A419A 0.11 TCGA-51-6867-01 11 36614642 36614642 C G RAG2 Missense_Mutation p.Q359H 0.19 tolerated(0.06) benign(0.115) TCGA-51-6867-01 11 45937784 45937784 C A PEX16 Missense_Mutation p.L73F 0.32 tolerated(0.44) benign(0.033) TCGA-51-6867-01 11 45970440 45970440 T G PHF21A Silent p.R428R 0.33 TCGA-51-6867-01 11 47299779 47299779 G T MADD Missense_Mutation p.D387Y 0.35 deleterious(0.01) probably_damaging(0.934) TCGA-51-6867-01 11 48347253 48347253 G C OR4C3 Missense_Mutation p.S254T 0.13 deleterious(0.04) possibly_damaging(0.765) TCGA-51-6867-01 11 49597940 49597940 C T RP11-707M1.1 RNA 0.41 TCGA-51-6867-01 11 49974120 49974120 C A OR4C13 Missense_Mutation p.A49D 0.27 deleterious_low_confidence(0.01) benign(0.14) TCGA-51-6867-01 11 51515322 51515322 G T OR4C46 Missense_Mutation p.G14V 0.50 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-51-6867-01 11 51515559 51515559 A T OR4C46 Missense_Mutation p.N93I 0.47 tolerated_low_confidence(0.08) benign(0.021) TCGA-51-6867-01 11 55340461 55340461 G C OR4C16 Silent p.T286T 0.58 TCGA-51-6867-01 11 55587546 55587546 G T OR5D18 Silent p.V147V 0.34 TCGA-51-6867-01 11 55587810 55587810 C A OR5D18 Silent p.R235R 0.17 TCGA-51-6867-01 11 56019882 56019882 G T OR5T3 Missense_Mutation p.L69F 0.51 deleterious(0.02) probably_damaging(0.937) TCGA-51-6867-01 11 56185183 56185183 G A OR5R1 Missense_Mutation p.H176Y 0.42 tolerated(0.05) benign(0.039) TCGA-51-6867-01 11 56431516 56431516 G T OR5AR1 Missense_Mutation p.A119S 0.48 deleterious(0.01) benign(0.207) TCGA-51-6867-01 11 57003959 57003959 C G APLNR Missense_Mutation p.E174Q 0.47 tolerated(0.26) benign(0.008) TCGA-51-6867-01 11 57003961 57003961 A T APLNR Nonsense_Mutation p.L173* 0.48 TCGA-51-6867-01 11 57798680 57798680 G T OR6Q1 Missense_Mutation p.G86C 0.29 deleterious(0.01) probably_damaging(0.936) TCGA-51-6867-01 11 57886537 57886537 C T OR9I1 Missense_Mutation p.R127H 0.25 deleterious(0.01) benign(0.001) TCGA-51-6867-01 11 57947207 57947207 T C OR9Q1 Silent p.C97C 0.27 TCGA-51-6867-01 11 5862405 5862405 G T OR52E6 Silent p.T241T 0.67 TCGA-51-6867-01 11 5878103 5878103 A G OR52E8 Missense_Mutation p.I277T 0.38 deleterious(0.02) benign(0.261) TCGA-51-6867-01 11 61595960 61595960 C A FADS2 Missense_Mutation p.T33N 0.21 tolerated(0.51) benign(0.008) TCGA-51-6867-01 11 67232276 67232276 C G TMEM134 Missense_Mutation p.G168A 0.35 tolerated(0.07) benign(0.024) TCGA-51-6867-01 11 69465985 69465985 G T CCND1 Nonsense_Mutation p.E275* 0.50 TCGA-51-6867-01 11 69588155 69588155 C G FGF4 Silent p.L181L 0.23 TCGA-51-6867-01 11 71946975 71946975 G T INPPL1 Missense_Mutation p.G942W 0.17 deleterious(0.04) possibly_damaging(0.744) TCGA-51-6867-01 11 74914471 74914471 C T SLCO2B1 Missense_Mutation p.R650W 0.50 deleterious(0) probably_damaging(0.999) TCGA-51-6867-01 11 83770505 83770505 C - DLG2 Frame_Shift_Del p.V258* 0.31 TCGA-51-6867-01 11 88027280 88027280 C T CTSC Nonsense_Mutation p.W429* 0.25 TCGA-51-6867-01 11 92715414 92715414 C T MTNR1B Missense_Mutation p.A342V 0.41 tolerated(0.23) benign(0.004) TCGA-51-6867-01 11 94230075 94230075 A C ANKRD49 Missense_Mutation p.K72N 0.23 tolerated(0.58) benign(0.001) TCGA-51-6867-01 12 10561536 10561536 C T KLRC4 Silent p.V87V 0.30 TCGA-51-6867-01 12 107712685 107712685 T A BTBD11 5'UTR 0.46 TCGA-51-6867-01 12 110883262 110883262 C T ARPC3 Missense_Mutation p.R34K 0.30 tolerated(0.82) benign(0.002) TCGA-51-6867-01 12 11183210 11183210 A G TAS2R31 Missense_Mutation p.F242S 0.39 tolerated(0.21) benign(0.264) TCGA-51-6867-01 12 113559416 113559416 C A RASAL1 Missense_Mutation p.R109L 0.37 deleterious(0.03) benign(0.428) TCGA-51-6867-01 12 114823323 114823323 C A TBX5 Missense_Mutation p.G238V 0.35 deleterious(0) probably_damaging(0.995) TCGA-51-6867-01 12 114841708 114841708 C T TBX5 5'UTR 0.40 TCGA-51-6867-01 12 117681210 117681210 C A NOS1 Missense_Mutation p.D986Y 0.38 deleterious(0) probably_damaging(0.997) TCGA-51-6867-01 12 118504385 118504385 C A VSIG10 3'UTR 0.17 TCGA-51-6867-01 12 121461870 121461870 G T OASL Missense_Mutation p.Q324K 0.39 tolerated(0.39) possibly_damaging(0.832) TCGA-51-6867-01 12 123047244 123047244 C T KNTC1 Silent p.F534F 0.14 TCGA-51-6867-01 12 124326027 124326027 G T DNAH10 Missense_Mutation p.E1647D 0.36 probably_damaging(0.997) TCGA-51-6867-01 12 125397663 125397663 A G UBC Silent p.L219L 0.16 TCGA-51-6867-01 12 130921685 130921685 A T RIMBP2 Missense_Mutation p.L586Q 0.30 deleterious(0.02) probably_damaging(0.988) TCGA-51-6867-01 12 132334431 132334431 G A MMP17 Missense_Mutation p.G430D 0.47 tolerated(0.09) probably_damaging(0.988) TCGA-51-6867-01 12 13768477 13768477 C G GRIN2B Missense_Mutation p.G484R 0.46 deleterious(0.01) probably_damaging(1) TCGA-51-6867-01 12 1953573 1953573 C A CACNA2D4 Missense_Mutation p.G822V 0.45 deleterious(0.02) benign(0.059) TCGA-51-6867-01 12 2943877 2943877 G C NRIP2 Missense_Mutation p.F91L 0.18 deleterious(0) probably_damaging(0.999) TCGA-51-6867-01 12 30906740 30906740 C G CAPRIN2 5'UTR 0.47 TCGA-51-6867-01 12 40715834 40715834 T C LRRK2 Intron 0.34 TCGA-51-6867-01 12 45171057 45171057 C A NELL2 Missense_Mutation p.G266V 0.42 deleterious(0) probably_damaging(1) TCGA-51-6867-01 12 5154512 5154512 G C KCNA5 Missense_Mutation p.R400P 0.12 deleterious(0) probably_damaging(0.999) TCGA-51-6867-01 12 52056659 52056659 G T SCN8A Nonsense_Mutation p.E20* 0.17 TCGA-51-6867-01 12 52284661 52284661 G C ANKRD33 Missense_Mutation p.A311P 0.35 deleterious(0) possibly_damaging(0.505) TCGA-51-6867-01 12 52867241 52867241 C T KRT6C Missense_Mutation p.G94D 0.26 deleterious(0) unknown(0) TCGA-51-6867-01 12 53342881 53342881 C T KRT18 5'UTR 0.16 TCGA-51-6867-01 12 53840017 53840017 C T PRR13 3'UTR 0.42 TCGA-51-6867-01 12 53876661 53876661 C T MAP3K12 Silent p.S642S 0.24 TCGA-51-6867-01 12 55725953 55725953 C T OR6C3 Missense_Mutation p.L157F 0.04 deleterious_low_confidence(0) possibly_damaging(0.772) TCGA-51-6867-01 12 56094925 56094925 C A ITGA7 Missense_Mutation p.R143L 0.38 tolerated(0.37) benign(0.006) TCGA-51-6867-01 12 56554103 56554109 AGGTAAG - MYL6 Splice_Site p.X143_splice 0.24 TCGA-51-6867-01 12 57114418 57114418 G - NACA Frame_Shift_Del p.P299Qfs*25 0.28 TCGA-51-6867-01 12 57409514 57409514 C G TAC3 Missense_Mutation p.C23S 0.42 deleterious(0) probably_damaging(0.987) TCGA-51-6867-01 12 57872485 57872485 C A ARHGAP9 Missense_Mutation p.R124S 0.31 tolerated(0.86) benign(0.075) TCGA-51-6867-01 12 6085416 6085416 T G VWF Missense_Mutation p.H2433P 0.42 tolerated(0.09) possibly_damaging(0.904) TCGA-51-6867-01 12 6125767 6125767 G A VWF Silent p.D1742D 0.23 TCGA-51-6867-01 12 64377801 64377801 G T SRGAP1 Missense_Mutation p.D48Y 0.38 deleterious(0) probably_damaging(1) TCGA-51-6867-01 12 65632546 65632546 C T LEMD3 Nonsense_Mutation p.R625* 0.12 TCGA-51-6867-01 12 6806626 6806626 C T PIANP Missense_Mutation p.G117E 0.19 tolerated_low_confidence(0.11) probably_damaging(0.969) TCGA-51-6867-01 12 70188989 70188989 T C RAB3IP Silent p.P267P 0.38 TCGA-51-6867-01 12 7463238 7463238 C A ACSM4 Silent p.A172A 0.27 TCGA-51-6867-01 12 75444377 75444377 G T KCNC2 Missense_Mutation p.P470T 0.37 deleterious(0) probably_damaging(0.995) TCGA-51-6867-01 12 8290908 8290908 G T CLEC4A 3'UTR 0.32 TCGA-51-6867-01 12 85449781 85449781 G C LRRIQ1 Missense_Mutation p.G404R 0.37 tolerated(0.12) benign(0.033) TCGA-51-6867-01 12 88589051 88589051 T C TMTC3 Silent p.A790A 0.40 TCGA-51-6867-01 12 97052100 97052100 G T C12orf55 Missense_Mutation p.R1812S 0.34 deleterious(0.04) benign(0.047) TCGA-51-6867-01 12 97102562 97102562 A C C12orf55 Silent p.P2235P 0.45 TCGA-51-6867-01 12 97137850 97137850 C G C12orf55 Missense_Mutation p.A2537G 0.39 deleterious(0.04) benign(0.008) TCGA-51-6867-01 13 20567940 20567940 C A ZMYM2 Missense_Mutation p.T243K 0.70 deleterious(0.04) possibly_damaging(0.617) TCGA-51-6867-01 13 26343186 26343186 T C ATP8A2 Missense_Mutation p.V796A 0.21 deleterious(0.01) benign(0.281) TCGA-51-6867-01 13 27847425 27847425 G C RASL11A Missense_Mutation p.E175Q 0.36 deleterious(0.01) probably_damaging(1) TCGA-51-6867-01 13 29598829 29598829 G C MTUS2 Silent p.G8G 0.48 TCGA-51-6867-01 13 32798394 32798394 G T FRY Silent p.T1596T 0.65 TCGA-51-6867-01 13 36886346 36886346 C A SPG20 Nonsense_Mutation p.E557* 0.62 TCGA-51-6867-01 13 38237562 38237562 G T TRPC4 Missense_Mutation p.A560E 0.57 deleterious(0.04) probably_damaging(0.972) TCGA-51-6867-01 13 49086175 49086175 T C RCBTB2 Missense_Mutation p.M218V 0.59 tolerated(0.17) probably_damaging(0.989) TCGA-51-6867-01 13 75894158 75894158 T C TBC1D4 Silent p.S738S 0.44 TCGA-51-6867-01 14 105239691 105239691 T A AKT1 Missense_Mutation p.D285V 0.19 deleterious(0) probably_damaging(0.965) TCGA-51-6867-01 14 105821453 105821453 A G PACS2 Missense_Mutation p.Y121C 0.42 deleterious(0) probably_damaging(0.999) TCGA-51-6867-01 14 106237513 106237513 G T IGHG3 Silent p.G77G 0.56 TCGA-51-6867-01 14 106586287 106586287 C A IGHV3-13 Missense_Mutation p.W66C 0.50 deleterious_low_confidence(0.01) benign(0.235) TCGA-51-6867-01 14 106780679 106780679 C G IGHV4-28 Missense_Mutation p.G62A 0.19 deleterious(0) possibly_damaging(0.801) TCGA-51-6867-01 14 106805372 106805372 T A IGHV4-31 Missense_Mutation p.K64M 0.20 deleterious_low_confidence(0.01) probably_damaging(0.927) TCGA-51-6867-01 14 20216144 20216144 C T OR4Q3 Silent p.I186I 0.13 TCGA-51-6867-01 14 20483059 20483059 A G OR4K14 Silent p.C98C 0.26 TCGA-51-6867-01 14 20692761 20692761 C T OR11H6 Missense_Mutation p.A298V 0.17 tolerated(1) benign(0.006) TCGA-51-6867-01 14 21623891 21623891 G T OR5AU1 Silent p.L98L 0.42 TCGA-51-6867-01 14 22133746 22133746 G T OR4E2 Missense_Mutation p.L150F 0.24 tolerated(0.09) possibly_damaging(0.515) TCGA-51-6867-01 14 22217804 22217804 A G TRAV5 Missense_Mutation p.Y52C 0.45 deleterious(0) probably_damaging(0.992) TCGA-51-6867-01 14 25075913 25075913 G T GZMH Missense_Mutation p.Q213K 0.48 deleterious(0.01) probably_damaging(0.927) TCGA-51-6867-01 14 42356321 42356321 G A LRFN5 Missense_Mutation p.D165N 0.44 tolerated(0.06) benign(0.191) TCGA-51-6867-01 14 47120619 47120619 C T RPL10L Silent p.G107G 0.21 TCGA-51-6867-01 14 50798849 50798849 A T CDKL1 Intron 0.79 TCGA-51-6867-01 14 51210200 51210200 C T NIN Silent p.Q1745Q 0.20 TCGA-51-6867-01 14 52535714 52535714 C G NID2 5'Flank 0.47 TCGA-51-6867-01 14 58030826 58030826 A G SLC35F4 3'UTR 0.21 TCGA-51-6867-01 14 58055993 58055993 G T SLC35F4 Silent p.V212V 0.17 TCGA-51-6867-01 14 64542599 64542599 C T SYNE2 Intron 0.22 TCGA-51-6867-01 14 64608237 64608237 A G SYNE2 Missense_Mutation p.H5052R 0.07 probably_damaging(0.95) TCGA-51-6867-01 14 67857433 67857433 G A PLEK2 Missense_Mutation p.R268C 0.11 deleterious(0) probably_damaging(0.96) TCGA-51-6867-01 14 70712483 70712483 T C ADAM21P1 RNA 0.35 TCGA-51-6867-01 14 70826259 70826259 G C COX16 Missense_Mutation p.L16V 0.05 tolerated(0.25) benign(0.026) TCGA-51-6867-01 14 78399825 78399825 C T ADCK1 3'UTR 0.20 TCGA-51-6867-01 14 86089544 86089544 T C FLRT2 Silent p.F562F 0.37 TCGA-51-6867-01 14 88442765 88442765 C A GALC Missense_Mutation p.W230L 0.46 deleterious(0.02) probably_damaging(0.953) TCGA-51-6867-01 14 88945594 88945594 C A PTPN21 Silent p.A727A 0.76 TCGA-51-6867-01 14 89153649 89153649 T A EML5 Missense_Mutation p.D922V 0.50 deleterious(0) possibly_damaging(0.881) TCGA-51-6867-01 14 89154790 89154790 T A EML5 Missense_Mutation p.Y856F 0.42 tolerated(0.25) benign(0.071) TCGA-51-6867-01 14 90650540 90650540 G T KCNK13 Missense_Mutation p.L140F 0.44 deleterious(0) probably_damaging(1) TCGA-51-6867-01 14 94642397 94642397 G A PPP4R4 Missense_Mutation p.E42K 0.24 deleterious(0) probably_damaging(0.999) TCGA-51-6867-01 14 94780394 94780394 C T SERPINA6 Missense_Mutation p.V198I 0.54 tolerated(0.54) benign(0.022) TCGA-51-6867-01 14 94930982 94930982 G C SERPINA9 Intron 0.57 TCGA-51-6867-01 14 95942047 95942047 C T SYNE3 Missense_Mutation p.A38T 0.23 tolerated(0.27) benign(0.003) TCGA-51-6867-01 15 25328008 25328008 G T SNORD116-18 5'Flank 0.21 TCGA-51-6867-01 15 25417675 25417675 G T SNORD115-3 5'Flank 0.49 TCGA-51-6867-01 15 25444674 25444674 C A SNORD115-16 RNA 0.39 TCGA-51-6867-01 15 25449419 25449419 T A SNORD115-20 5'Flank 0.44 TCGA-51-6867-01 15 28391410 28391410 C T HERC2 Missense_Mutation p.V3661I 0.25 benign(0.042) TCGA-51-6867-01 15 32449842 32449842 G T CHRNA7 Missense_Mutation p.R184L 0.49 deleterious(0.02) possibly_damaging(0.661) TCGA-51-6867-01 15 32929922 32929922 C T ARHGAP11A Missense_Mutation p.S983F 0.11 tolerated(0.05) benign(0.072) TCGA-51-6867-01 15 33357038 33357038 C A FMN1 Intron 0.60 TCGA-51-6867-01 15 33872308 33872308 G A RYR3 Missense_Mutation p.R467H 0.24 probably_damaging(0.998) TCGA-51-6867-01 15 34064310 34064310 G T RYR3 Silent p.T3002T 0.52 TCGA-51-6867-01 15 34078058 34078058 C G RYR3 Missense_Mutation p.P3155R 0.22 benign(0.001) TCGA-51-6867-01 15 38990598 38990598 G T C15orf53 Missense_Mutation p.R131L 0.49 tolerated_low_confidence(0.46) benign(0.01) TCGA-51-6867-01 15 39881524 39881524 A G THBS1 Missense_Mutation p.Q632R 0.52 tolerated(0.32) benign(0.001) TCGA-51-6867-01 15 41023290 41023290 T A RAD51 Missense_Mutation p.C313S 0.19 deleterious(0) possibly_damaging(0.783) TCGA-51-6867-01 15 41136956 41136956 G C SPINT1 Silent p.S68S 0.45 TCGA-51-6867-01 15 42377686 42377686 C T PLA2G4D Intron 0.17 TCGA-51-6867-01 15 43322257 43322257 T C UBR1 Missense_Mutation p.Y755C 0.49 deleterious(0) probably_damaging(0.999) TCGA-51-6867-01 15 54306680 54306680 A T UNC13C Missense_Mutation p.H527L 0.12 deleterious_low_confidence(0.04) benign(0.008) TCGA-51-6867-01 15 57976754 57976754 C G GCOM1 Intron 0.43 TCGA-51-6867-01 15 59175883 59175883 C A SLTM Missense_Mutation p.D980Y 0.22 deleterious(0) probably_damaging(0.995) TCGA-51-6867-01 15 59344585 59344585 C G RNF111 Nonsense_Mutation p.S321* 0.25 TCGA-51-6867-01 15 65412104 65412104 T C PDCD7 Missense_Mutation p.I400V 0.25 tolerated(0.28) benign(0.074) TCGA-51-6867-01 15 65682493 65682493 C A IGDCC4 Missense_Mutation p.S803I 0.67 deleterious(0) probably_damaging(1) TCGA-51-6867-01 15 66844025 66844025 G T LCTL Missense_Mutation p.A500D 0.60 tolerated(0.45) possibly_damaging(0.72) TCGA-51-6867-01 15 67681256 67681256 C A IQCH Missense_Mutation p.A515E 0.67 tolerated(0.05) probably_damaging(0.921) TCGA-51-6867-01 15 74468502 74468502 C T ISLR 3'UTR 0.19 TCGA-51-6867-01 15 77471280 77471280 G C PEAK1 Missense_Mutation p.Q997E 0.12 tolerated(0.71) benign(0.001) TCGA-51-6867-01 15 90349695 90349695 G T ANPEP Missense_Mutation p.N40K 0.11 deleterious(0.02) possibly_damaging(0.815) TCGA-51-6867-01 16 17211676 17211676 T G XYLT1 Missense_Mutation p.Y795S 0.50 deleterious(0.03) probably_damaging(0.999) TCGA-51-6867-01 16 20410623 20410623 G A PDILT 5'UTR 0.15 TCGA-51-6867-01 16 240110 240110 C A LUC7L Silent p.R277R 0.24 TCGA-51-6867-01 16 24578719 24578719 G C RBBP6 Missense_Mutation p.W615C 0.26 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-51-6867-01 16 27761302 27761302 G T KIAA0556 Missense_Mutation p.Q1007H 0.14 tolerated(0.05) benign(0.093) TCGA-51-6867-01 16 27840208 27840208 C A GSG1L Silent p.T244T 0.56 TCGA-51-6867-01 16 30748778 30748778 C - SRCAP Frame_Shift_Del p.P2473Qfs*2 0.38 TCGA-51-6867-01 16 3140124 3140124 G T ZSCAN10 Nonsense_Mutation p.C382* 0.43 TCGA-51-6867-01 16 31422191 31422191 G T ITGAD Missense_Mutation p.G450W 0.23 deleterious(0) probably_damaging(1) TCGA-51-6867-01 16 47162273 47162273 T C NETO2 Silent p.E148E 0.18 TCGA-51-6867-01 16 56548412 56548412 G A BBS2 Missense_Mutation p.L100F 0.19 deleterious(0.01) probably_damaging(0.94) TCGA-51-6867-01 16 56920331 56920331 T C SLC12A3 Missense_Mutation p.F661L 0.22 tolerated(0.6) benign(0.311) TCGA-51-6867-01 16 68338094 68338094 C T SLC7A6OS Silent p.L171L 0.17 TCGA-51-6867-01 16 68390955 68390955 A T PRMT7 Splice_Site p.X637_splice 0.53 TCGA-51-6867-01 16 70977814 70977814 G T HYDIN Silent p.R2190R 0.27 TCGA-51-6867-01 16 74376129 74376129 T C RP11-252A24.2 RNA 0.47 TCGA-51-6867-01 16 77356284 77356284 T A ADAMTS18 Silent p.G704G 0.55 TCGA-51-6867-01 16 77401549 77401549 G T ADAMTS18 Missense_Mutation p.H189Q 0.43 tolerated(0.31) possibly_damaging(0.815) TCGA-51-6867-01 16 816159 816159 G T MSLN Silent p.L332L 0.26 TCGA-51-6867-01 16 822938 822938 C A MSLNL Silent p.T749T 0.27 TCGA-51-6867-01 16 83704450 83704450 A T CDH13 Missense_Mutation p.E433V 0.32 tolerated(0.27) possibly_damaging(0.735) TCGA-51-6867-01 16 84792383 84792383 C G USP10 Missense_Mutation p.I418M 0.22 deleterious(0.03) possibly_damaging(0.714) TCGA-51-6867-01 16 89251664 89251664 C A CDH15 Missense_Mutation p.Q196K 0.42 deleterious(0.01) probably_damaging(0.953) TCGA-51-6867-01 16 89251666 89251666 G T CDH15 Missense_Mutation p.Q196H 0.42 deleterious(0.02) possibly_damaging(0.612) TCGA-51-6867-01 16 90001855 90001855 C T TUBB3 Silent p.A332A 0.24 TCGA-51-6867-01 17 11593596 11593596 A T DNAH9 Missense_Mutation p.K1486M 0.07 probably_damaging(0.986) TCGA-51-6867-01 17 18022667 18022667 G T MYO15A Missense_Mutation p.G185C 0.64 probably_damaging(0.999) TCGA-51-6867-01 17 21318960 21318960 C G KCNJ12 Missense_Mutation p.F102L 0.12 deleterious(0) probably_damaging(0.981) TCGA-51-6867-01 17 2601323 2601323 G C CLUH Missense_Mutation p.P572A 0.58 deleterious(0) probably_damaging(0.999) TCGA-51-6867-01 17 27042107 27042107 C A RAB34 Missense_Mutation p.A240S 0.15 deleterious(0) probably_damaging(0.979) TCGA-51-6867-01 17 27493354 27493354 G A MYO18A Missense_Mutation p.P202L 0.43 deleterious_low_confidence(0) benign(0.417) TCGA-51-6867-01 17 31439078 31439078 G T ASIC2 Missense_Mutation p.T239K 0.19 deleterious(0) possibly_damaging(0.876) TCGA-51-6867-01 17 32955611 32955611 T C TMEM132E Missense_Mutation p.L253S 0.29 deleterious(0.05) probably_damaging(0.933) TCGA-51-6867-01 17 33849655 33849655 G T SLFN12L 5'UTR 0.38 TCGA-51-6867-01 17 34192255 34192255 G A C17orf66 Missense_Mutation p.A95V 0.45 tolerated(0.06) benign(0.025) TCGA-51-6867-01 17 34340806 34340806 C A CCL23 Nonsense_Mutation p.E94* 0.39 TCGA-51-6867-01 17 34341384 34341384 T C CCL23 Silent p.V42V 0.27 TCGA-51-6867-01 17 35627712 35627712 G A ACACA Missense_Mutation p.S350L 0.12 deleterious(0) probably_damaging(0.988) TCGA-51-6867-01 17 36353716 36353716 T A RP11-1407O15.2 Missense_Mutation p.E382V 0.09 TCGA-51-6867-01 17 36909435 36909435 G T PSMB3 Missense_Mutation p.M12I 0.18 tolerated(0.71) benign(0.01) TCGA-51-6867-01 17 37922473 37922473 G C IKZF3 Missense_Mutation p.P367R 0.40 tolerated(0.84) benign(0.001) TCGA-51-6867-01 17 38907445 38907445 C A KRT25 Missense_Mutation p.R268M 0.47 deleterious(0) possibly_damaging(0.89) TCGA-51-6867-01 17 39919291 39919291 C A JUP Missense_Mutation p.G481C 0.26 deleterious(0) probably_damaging(0.999) TCGA-51-6867-01 17 45198244 45198244 C A CDC27 3'UTR 0.58 TCGA-51-6867-01 17 45221269 45221269 T C CDC27 Missense_Mutation p.S390G 0.21 tolerated(0.15) benign(0.182) TCGA-51-6867-01 17 46030604 46030604 G T PRR15L 5'UTR 0.38 TCGA-51-6867-01 17 51900559 51900559 G C KIF2B Missense_Mutation p.W55C 0.34 tolerated(0.31) benign(0.014) TCGA-51-6867-01 17 56247177 56247177 A T OR4D2 Missense_Mutation p.Q54L 0.39 tolerated(0.07) benign(0.028) TCGA-51-6867-01 17 56572372 56572372 C A MTMR4 Missense_Mutation p.R1044L 0.30 deleterious(0.02) possibly_damaging(0.712) TCGA-51-6867-01 17 61890813 61890813 A T DDX42 Missense_Mutation p.Q634L 0.41 deleterious(0) possibly_damaging(0.49) TCGA-51-6867-01 17 62026100 62026100 G T SCN4A Silent p.L1005L 0.28 TCGA-51-6867-01 17 62522188 62522188 G T CEP95 Splice_Site p.X341_splice 0.30 TCGA-51-6867-01 17 65116718 65116718 G C HELZ Missense_Mutation p.T1214R 0.08 deleterious_low_confidence(0) benign(0.274) TCGA-51-6867-01 17 71282109 71282109 G A CDC42EP4 Silent p.P177P 0.35 TCGA-51-6867-01 17 72363771 72363771 C T GPR142 Nonsense_Mutation p.Q43* 0.31 TCGA-51-6867-01 17 7346177 7346177 G C FGF11 Intron 0.62 TCGA-51-6867-01 17 73487919 73487919 C T KIAA0195 Missense_Mutation p.P512S 0.16 tolerated(0.21) benign(0.021) TCGA-51-6867-01 17 73759106 73759106 G A GALK1 Silent p.L200L 0.25 TCGA-51-6867-01 17 73812941 73812941 G C UNK Missense_Mutation p.G351A 0.10 tolerated(0.22) benign(0.345) TCGA-51-6867-01 17 73836318 73836318 G A UNC13D Silent p.L282L 0.15 TCGA-51-6867-01 17 73945882 73945882 T C ACOX1 Silent p.P465P 0.28 TCGA-51-6867-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.78 deleterious(0) probably_damaging(1) TCGA-51-6867-01 17 77082447 77082447 G T ENGASE 3'UTR 0.36 TCGA-51-6867-01 17 77704943 77704943 G T ENPP7 Silent p.T14T 0.27 TCGA-51-6867-01 17 79827213 79827213 G C ARHGDIA Missense_Mutation p.S115C 0.12 tolerated(0.2) benign(0.021) TCGA-51-6867-01 18 19424059 19424059 G T MIB1 Missense_Mutation p.V686F 0.27 deleterious(0) probably_damaging(0.997) TCGA-51-6867-01 18 21404392 21404392 G T LAMA3 Missense_Mutation p.A812S 0.30 benign(0.015) TCGA-51-6867-01 18 21892013 21892013 C A OSBPL1A Missense_Mutation p.D343Y 0.31 deleterious(0.02) benign(0.372) TCGA-51-6867-01 18 22805742 22805742 G A ZNF521 Silent p.L714L 0.27 TCGA-51-6867-01 18 24440749 24440749 C A AQP4 Missense_Mutation p.W227L 0.22 deleterious(0) probably_damaging(0.92) TCGA-51-6867-01 18 29782884 29782884 T C MEP1B Silent p.N93N 0.20 TCGA-51-6867-01 18 48325725 48325725 G T MRO Nonsense_Mutation p.Y257* 0.25 TCGA-51-6867-01 18 56897753 56897753 C G GRP 3'UTR 0.29 TCGA-51-6867-01 18 61223459 61223459 G T SERPINB12 Missense_Mutation p.D23Y 0.34 deleterious(0.01) possibly_damaging(0.781) TCGA-51-6867-01 18 6894877 6894877 C T ARHGAP28 Missense_Mutation p.S472L 0.37 tolerated(0.11) benign(0.131) TCGA-51-6867-01 18 77703416 77703416 T C PQLC1 Missense_Mutation p.M84V 0.42 deleterious(0) probably_damaging(0.999) TCGA-51-6867-01 19 10084600 10084600 A G COL5A3 Missense_Mutation p.S1185P 0.67 probably_damaging(0.916) TCGA-51-6867-01 19 10818035 10818035 G A QTRT1 Missense_Mutation p.R170H 0.69 deleterious(0) probably_damaging(0.963) TCGA-51-6867-01 19 1257361 1257361 G A MIDN 3'UTR 0.65 TCGA-51-6867-01 19 15073115 15073115 C T SLC1A6 Missense_Mutation p.V212M 0.73 deleterious(0.04) benign(0.059) TCGA-51-6867-01 19 15770260 15770260 A G CYP4F3 3'UTR 0.71 TCGA-51-6867-01 19 17212804 17212804 C T MYO9B Missense_Mutation p.R93W 0.26 deleterious(0) probably_damaging(1) TCGA-51-6867-01 19 17343412 17343412 C A NR2F6 Missense_Mutation p.A322S 0.65 tolerated(0.07) possibly_damaging(0.904) TCGA-51-6867-01 19 17514612 17514612 G T BST2 Missense_Mutation p.S145R 0.27 deleterious(0.02) possibly_damaging(0.87) TCGA-51-6867-01 19 17780409 17780409 G T UNC13A Missense_Mutation p.P116H 0.17 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-51-6867-01 19 17780410 17780410 G T UNC13A Missense_Mutation p.P116T 0.18 tolerated_low_confidence(0.06) probably_damaging(0.964) TCGA-51-6867-01 19 18004631 18004631 G T SLC5A5 Missense_Mutation p.W626L 0.16 tolerated_low_confidence(0.37) benign(0.013) TCGA-51-6867-01 19 19360754 19360754 C A NCAN 3'UTR 0.43 TCGA-51-6867-01 19 19414736 19414736 G T SUGP1 Intron 0.30 TCGA-51-6867-01 19 19626996 19626996 G T NDUFA13 5'UTR 0.25 TCGA-51-6867-01 19 20027402 20027402 A T ZNF93 Missense_Mutation p.H55L 0.22 tolerated(0.05) benign(0.003) TCGA-51-6867-01 19 22155761 22155761 G A ZNF208 Missense_Mutation p.P692L 0.05 deleterious(0.03) benign(0.231) TCGA-51-6867-01 19 22156335 22156335 C A ZNF208 Nonsense_Mutation p.E501* 0.14 TCGA-51-6867-01 19 22605003 22605003 T C ZNF98 Silent p.L8L 0.19 TCGA-51-6867-01 19 22939507 22939507 G T ZNF99 3'Flank 0.25 TCGA-51-6867-01 19 22952733 22952733 T G ZNF99 Intron 0.18 TCGA-51-6867-01 19 23328768 23328768 A G ZNF730 Missense_Mutation p.K308E 0.22 tolerated(0.05) benign(0.118) TCGA-51-6867-01 19 33700370 33700370 C T SLC7A10 Missense_Mutation p.A429T 0.31 tolerated(0.33) benign(0.003) TCGA-51-6867-01 19 34890150 34890150 G A GPI Silent p.L447L 0.41 TCGA-51-6867-01 19 36014299 36014299 T C SBSN 3'UTR 0.40 TCGA-51-6867-01 19 39962086 39962086 A G SUPT5H Silent p.S589S 0.34 TCGA-51-6867-01 19 40424151 40424151 G T FCGBP Missense_Mutation p.F684L 0.35 probably_damaging(0.999) TCGA-51-6867-01 19 40540787 40540787 T C ZNF780B Missense_Mutation p.Q660R 0.48 tolerated(0.1) possibly_damaging(0.514) TCGA-51-6867-01 19 40902351 40902351 G C PRX Silent p.L636L 0.11 TCGA-51-6867-01 19 46180363 46180364 - G GIPR Frame_Shift_Ins 0.20 TCGA-51-6867-01 19 47861229 47861229 C A DHX34 Missense_Mutation p.P375H 0.16 deleterious(0.01) possibly_damaging(0.738) TCGA-51-6867-01 19 4793688 4793688 G C FEM1A Missense_Mutation p.D608H 0.60 deleterious(0) probably_damaging(1) TCGA-51-6867-01 19 48176871 48176871 T C GLTSCR1 Missense_Mutation p.C14R 0.42 unknown(0) TCGA-51-6867-01 19 49538915 49538915 C A CGB1 Missense_Mutation p.K140N 0.40 deleterious_low_confidence(0.01) unknown(0) TCGA-51-6867-01 19 50548615 50548615 A G ZNF473 Silent p.T305T 0.39 TCGA-51-6867-01 19 50926159 50926159 T C SPIB Silent p.F68F 0.36 TCGA-51-6867-01 19 51169456 51169456 G T SHANK1 Silent p.R1921R 0.28 TCGA-51-6867-01 19 51656413 51656413 C T SIGLEC7 Missense_Mutation p.P439S 0.31 tolerated(0.97) benign(0) TCGA-51-6867-01 19 51918237 51918237 T G SIGLEC10 Missense_Mutation p.N486H 0.34 deleterious(0) probably_damaging(0.979) TCGA-51-6867-01 19 52919481 52919481 A G ZNF528 Missense_Mutation p.H459R 0.36 deleterious(0) probably_damaging(0.999) TCGA-51-6867-01 19 53116608 53116608 C T ZNF83 Missense_Mutation p.D404N 0.36 tolerated(1) benign(0.002) TCGA-51-6867-01 19 53321256 53321256 C T ZNF28 5'UTR 0.11 TCGA-51-6867-01 19 53452922 53452922 C G ZNF816 3'UTR 0.25 TCGA-51-6867-01 19 53995914 53995914 G C ZNF813 3'UTR 0.34 TCGA-51-6867-01 19 54822667 54822667 G C LILRA5 Intron 0.20 TCGA-51-6867-01 19 55363640 55363640 C A KIR3DL2 Silent p.T86T 0.55 TCGA-51-6867-01 19 55493571 55493571 C G NLRP2 Missense_Mutation p.R169G 0.34 tolerated(0.34) benign(0.002) TCGA-51-6867-01 19 55493729 55493729 G T NLRP2 Silent p.T221T 0.36 TCGA-51-6867-01 19 55539132 55539132 G A GP6 Nonsense_Mutation p.Q142* 0.39 TCGA-51-6867-01 19 55831935 55831935 G T TMEM150B Missense_Mutation p.P40H 0.40 deleterious(0) probably_damaging(1) TCGA-51-6867-01 19 56370463 56370463 G C NLRP4 Missense_Mutation p.Q568H 0.07 tolerated(0.13) benign(0.212) TCGA-51-6867-01 19 56485047 56485047 C T NLRP8 Missense_Mutation p.T855I 0.38 tolerated(0.09) benign(0.024) TCGA-51-6867-01 19 56703329 56703329 C G ZSCAN5B Missense_Mutation p.D160H 0.08 tolerated(0.1) benign(0.006) TCGA-51-6867-01 19 58724248 58724248 G T ZNF274 Missense_Mutation p.E566D 0.42 tolerated(0.06) benign(0.014) TCGA-51-6867-01 19 58774114 58774114 A C ZNF544 Missense_Mutation p.K714N 0.22 deleterious(0) probably_damaging(0.932) TCGA-51-6867-01 19 58805612 58805612 G A ZNF8 Silent p.Q146Q 0.33 TCGA-51-6867-01 19 6731020 6731020 C T GPR108 Missense_Mutation p.E513K 0.20 deleterious(0.01) probably_damaging(0.937) TCGA-51-6867-01 1 101705431 101705431 G T S1PR1 Silent p.L297L 0.61 TCGA-51-6867-01 1 10523111 10523111 C A DFFA Intron 0.23 TCGA-51-6867-01 1 10523123 10523123 C A DFFA Missense_Mutation p.D259Y 0.18 deleterious(0) probably_damaging(0.992) TCGA-51-6867-01 1 109394802 109394802 T A AKNAD1 Missense_Mutation p.K162I 0.81 deleterious(0) possibly_damaging(0.901) TCGA-51-6867-01 1 114377595 114377595 C T PTPN22 Missense_Mutation p.D611N 0.67 deleterious(0.01) probably_damaging(0.978) TCGA-51-6867-01 1 114522116 114522116 C T OLFML3 5'UTR 0.09 TCGA-51-6867-01 1 114522150 114522150 C T OLFML3 Silent p.S4S 0.09 TCGA-51-6867-01 1 120930043 120930043 C T FCGR1B Silent p.V186V 0.63 TCGA-51-6867-01 1 1267178 1267178 G T TAS1R3 Missense_Mutation p.A118S 0.77 tolerated(0.31) benign(0.329) TCGA-51-6867-01 1 145415526 145415526 C A HFE2 Silent p.I115I 0.47 TCGA-51-6867-01 1 150204192 150204192 C G ANP32E Missense_Mutation p.E43Q 0.22 tolerated(0.06) possibly_damaging(0.807) TCGA-51-6867-01 1 152085053 152085053 C G TCHH Missense_Mutation p.E214Q 0.27 unknown(0) TCGA-51-6867-01 1 152085140 152085140 C A TCHH Nonsense_Mutation p.E185* 0.37 TCGA-51-6867-01 1 152280511 152280511 G T FLG Missense_Mutation p.S2284Y 0.11 possibly_damaging(0.608) TCGA-51-6867-01 1 152636875 152636875 G A LCE2D Silent p.G98G 0.13 TCGA-51-6867-01 1 154543838 154543838 G C CHRNB2 Missense_Mutation p.R180P 0.59 tolerated(0.06) probably_damaging(0.946) TCGA-51-6867-01 1 155256968 155256968 C G HCN3 Missense_Mutation p.I494M 0.12 deleterious(0) benign(0.361) TCGA-51-6867-01 1 155313161 155313161 G A ASH1L Missense_Mutation p.P2746L 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-51-6867-01 1 156248781 156248781 T C SMG5 Missense_Mutation p.N40S 0.66 tolerated(0.59) benign(0.008) TCGA-51-6867-01 1 156279028 156279028 T C CCT3 Missense_Mutation p.S534G 0.31 tolerated(0.69) benign(0) TCGA-51-6867-01 1 156294791 156294791 C G CCT3 Missense_Mutation p.D132H 0.19 deleterious(0.01) benign(0.279) TCGA-51-6867-01 1 156811567 156811567 G T INSRR Missense_Mutation p.D1139E 0.23 deleterious(0) benign(0.164) TCGA-51-6867-01 1 157516897 157516897 C A FCRL5 Missense_Mutation p.R48L 0.33 tolerated(0.29) benign(0.013) TCGA-51-6867-01 1 157737201 157737201 G A FCRL2 Missense_Mutation p.P328S 0.22 deleterious(0.04) possibly_damaging(0.536) TCGA-51-6867-01 1 158324250 158324250 C A CD1E Missense_Mutation p.H48N 0.11 tolerated(0.2) benign(0.002) TCGA-51-6867-01 1 158390473 158390473 A T OR10K2 Missense_Mutation p.F62I 0.34 deleterious(0) probably_damaging(0.998) TCGA-51-6867-01 1 158623132 158623132 C A SPTA1 Silent p.P1040P 0.34 TCGA-51-6867-01 1 158644393 158644393 A G SPTA1 Silent p.A395A 0.29 TCGA-51-6867-01 1 159175880 159175880 C G DARC Missense_Mutation p.I219M 0.16 deleterious(0) possibly_damaging(0.61) TCGA-51-6867-01 1 160535318 160535318 T A CD84 Missense_Mutation p.L88F 0.15 tolerated(0.06) benign(0.047) TCGA-51-6867-01 1 163042643 163042643 G A RGS4 Silent p.L163L 0.22 TCGA-51-6867-01 1 169446897 169446899 AAC - SLC19A2 In_Frame_Del p.V101del 0.41 TCGA-51-6867-01 1 169586280 169586280 G C SELP Missense_Mutation p.A156G 0.08 deleterious(0.01) probably_damaging(0.939) TCGA-51-6867-01 1 169993627 169993627 C G KIFAP3 Missense_Mutation p.E318Q 0.15 deleterious(0.02) probably_damaging(1) TCGA-51-6867-01 1 172628408 172628408 T A FASLG Missense_Mutation p.W23R 0.62 tolerated(0.13) benign(0.352) TCGA-51-6867-01 1 173174566 173174566 C A TNFSF4 Intron 0.79 TCGA-51-6867-01 1 179308608 179308608 A G SOAT1 Missense_Mutation p.Y142C 0.12 deleterious(0) probably_damaging(0.999) TCGA-51-6867-01 1 181548324 181548324 G C CACNA1E Missense_Mutation p.G245R 0.24 deleterious(0.01) probably_damaging(0.988) TCGA-51-6867-01 1 181548325 181548325 G T CACNA1E Missense_Mutation p.G245V 0.24 deleterious(0) probably_damaging(0.988) TCGA-51-6867-01 1 181702121 181702121 G T CACNA1E Missense_Mutation p.G967C 0.35 deleterious(0) benign(0.013) TCGA-51-6867-01 1 183253174 183253174 T C NMNAT2 Missense_Mutation p.D177G 0.12 deleterious(0.02) probably_damaging(0.997) TCGA-51-6867-01 1 186056440 186056440 A T HMCN1 Missense_Mutation p.K3046N 0.20 probably_damaging(0.997) TCGA-51-6867-01 1 19166735 19166735 C A TAS1R2 Missense_Mutation p.K626N 0.71 deleterious(0.02) benign(0.158) TCGA-51-6867-01 1 197029507 197029507 G A F13B Missense_Mutation p.P265L 0.05 deleterious(0) probably_damaging(0.997) TCGA-51-6867-01 1 197111515 197111515 G T ASPM Missense_Mutation p.P623T 0.21 tolerated(0.07) benign(0.008) TCGA-51-6867-01 1 197115393 197115393 C A ASPM Missense_Mutation p.A59S 0.56 tolerated(0.27) benign(0.007) TCGA-51-6867-01 1 197396601 197396601 T C CRB1 Missense_Mutation p.F716L 0.19 deleterious(0) probably_damaging(0.957) TCGA-51-6867-01 1 201047093 201047093 G C CACNA1S Missense_Mutation p.I511M 0.12 tolerated(0.26) benign(0.062) TCGA-51-6867-01 1 205549015 205549015 G A MFSD4 Missense_Mutation p.D123N 0.16 deleterious(0) probably_damaging(1) TCGA-51-6867-01 1 207073657 207073657 C A IL24 Silent p.I87I 0.18 TCGA-51-6867-01 1 207140401 207140401 T C FCAMR Silent p.L55L 0.14 TCGA-51-6867-01 1 210536217 210536217 A C HHAT Missense_Mutation p.Q39P 0.17 deleterious(0.04) unknown(0) TCGA-51-6867-01 1 216246497 216246497 G C USH2A Missense_Mutation p.I1906M 0.17 probably_damaging(0.971) TCGA-51-6867-01 1 216420237 216420237 G A USH2A Silent p.N833N 0.16 TCGA-51-6867-01 1 216465586 216465586 C A USH2A Missense_Mutation p.D591Y 0.17 probably_damaging(1) TCGA-51-6867-01 1 216737667 216737667 C G ESRRG Missense_Mutation p.M264I 0.73 tolerated(0.07) benign(0.121) TCGA-51-6867-01 1 217975180 217975180 G T SPATA17 Missense_Mutation p.W331C 0.63 deleterious(0) probably_damaging(0.96) TCGA-51-6867-01 1 220978392 220978392 A G MARC1 Splice_Site p.X252_splice 0.14 TCGA-51-6867-01 1 22205598 22205598 G - HSPG2 Frame_Shift_Del p.T787Rfs*18 0.38 TCGA-51-6867-01 1 224377732 224377732 C T DEGS1 Missense_Mutation p.P179L 0.51 deleterious(0) probably_damaging(0.987) TCGA-51-6867-01 1 226173092 226173092 C - SDE2 Frame_Shift_Del p.A423Qfs*24 0.41 TCGA-51-6867-01 1 226595745 226595745 C T PARP1 5'UTR 0.24 TCGA-51-6867-01 1 228285141 228285141 C T ARF1 Nonsense_Mutation p.Q83* 0.21 TCGA-51-6867-01 1 231556848 231556848 C T EGLN1 Missense_Mutation p.E263K 0.16 deleterious(0) probably_damaging(0.998) TCGA-51-6867-01 1 232144846 232144846 C T DISC1 3'UTR 0.19 TCGA-51-6867-01 1 235505800 235505800 G T GGPS1 Nonsense_Mutation p.E206* 0.20 TCGA-51-6867-01 1 237794781 237794781 G T RYR2 Silent p.L2165L 0.41 TCGA-51-6867-01 1 237806731 237806731 G T RYR2 Missense_Mutation p.M2442I 0.61 benign(0.034) TCGA-51-6867-01 1 238053428 238053428 G T ZP4 Missense_Mutation p.T75N 0.27 deleterious(0.02) possibly_damaging(0.905) TCGA-51-6867-01 1 240371485 240371485 C G FMN2 Missense_Mutation p.P1125A 0.34 unknown(0) TCGA-51-6867-01 1 24680925 24680925 C G GRHL3 Intron 0.17 TCGA-51-6867-01 1 247599410 247599410 C A NLRP3 Silent p.A879A 0.34 TCGA-51-6867-01 1 247694861 247694861 G T OR2C3 Missense_Mutation p.A318E 0.18 deleterious_low_confidence(0.02) benign(0.152) TCGA-51-6867-01 1 248129529 248129529 T C OR2AK2 Missense_Mutation p.L299P 0.22 deleterious(0) probably_damaging(0.968) TCGA-51-6867-01 1 248308908 248308908 T C OR2M5 Silent p.S153S 0.20 TCGA-51-6867-01 1 248343845 248343845 C A OR2M2 Silent p.I186I 0.15 TCGA-51-6867-01 1 248344228 248344228 T C OR2M2 Missense_Mutation p.L314S 0.57 deleterious(0.03) benign(0.011) TCGA-51-6867-01 1 248525389 248525389 C A OR2T4 Missense_Mutation p.N169K 0.15 deleterious(0.04) benign(0.043) TCGA-51-6867-01 1 248616159 248616159 C G OR2T2 Missense_Mutation p.H21D 0.08 tolerated(0.09) benign(0.058) TCGA-51-6867-01 1 248756147 248756147 T C OR2T10 Missense_Mutation p.Q308R 0.17 tolerated(0.65) benign(0.001) TCGA-51-6867-01 1 248789681 248789681 C G OR2T11 Missense_Mutation p.G250A 0.62 deleterious(0.01) probably_damaging(1) TCGA-51-6867-01 1 25571663 25571663 G C C1orf63 Nonsense_Mutation p.S217* 0.40 TCGA-51-6867-01 1 26751896 26751896 G A LIN28A Missense_Mutation p.G111R 0.64 deleterious(0) probably_damaging(0.997) TCGA-51-6867-01 1 27058096 27058096 G C ARID1A Splice_Site p.X601_splice 0.68 TCGA-51-6867-01 1 28598961 28598961 C A SESN2 Missense_Mutation p.T174N 0.19 tolerated(0.1) possibly_damaging(0.677) TCGA-51-6867-01 1 28599209 28599209 G C SESN2 Missense_Mutation p.E219Q 0.18 tolerated(0.06) possibly_damaging(0.771) TCGA-51-6867-01 1 28861645 28861645 A G RCC1 Silent p.V206V 0.66 TCGA-51-6867-01 1 33160504 33160504 C G SYNC Missense_Mutation p.V399L 0.70 tolerated(0.22) benign(0.06) TCGA-51-6867-01 1 35559515 35559515 G A ZMYM1 Intron 0.43 TCGA-51-6867-01 1 36360841 36360841 G A AGO1 Missense_Mutation p.E331K 0.17 tolerated(0.1) probably_damaging(0.988) TCGA-51-6867-01 1 38478481 38478481 G T UTP11L Missense_Mutation p.A3S 0.19 tolerated(1) benign(0.009) TCGA-51-6867-01 1 51755719 51755719 C A TTC39A Missense_Mutation p.R488L 0.23 tolerated(0.16) benign(0.021) TCGA-51-6867-01 1 54661343 54661343 C T CYB5RL 5'UTR 0.22 TCGA-51-6867-01 1 77094411 77094411 A C ST6GALNAC3 Missense_Mutation p.I280L 0.71 benign(0.321) TCGA-51-6867-01 1 7723490 7723490 G - CAMTA1 Frame_Shift_Del p.Y297Tfs*93 0.10 TCGA-51-6867-01 1 78428507 78428507 C A FUBP1 Missense_Mutation p.G431V 0.71 deleterious(0) probably_damaging(0.999) TCGA-51-6867-01 1 79357316 79357316 C A ELTD1 Missense_Mutation p.V635F 0.62 deleterious(0.01) probably_damaging(0.946) TCGA-51-6867-01 1 86913430 86913430 T C CLCA2 Silent p.P651P 0.73 TCGA-51-6867-01 1 89474823 89474823 A T GBP3 Missense_Mutation p.V489E 0.69 tolerated(1) benign(0.023) TCGA-51-6867-01 1 91733390 91733390 T C HFM1 Silent p.E1265E 0.55 TCGA-51-6867-01 20 1551449 1551449 A G SIRPB1 Splice_Site p.X362_splice 0.32 TCGA-51-6867-01 20 1551642 1551642 G T SIRPB1 Missense_Mutation p.A298D 0.28 deleterious(0) probably_damaging(0.999) TCGA-51-6867-01 20 16359563 16359563 C G KIF16B Missense_Mutation p.E1028D 0.19 tolerated_low_confidence(0.27) benign(0.105) TCGA-51-6867-01 20 16360595 16360595 C A KIF16B Silent p.L684L 0.26 TCGA-51-6867-01 20 19664963 19664963 C A SLC24A3 Missense_Mutation p.R349S 0.35 tolerated(0.08) probably_damaging(0.978) TCGA-51-6867-01 20 2384408 2384408 C A TGM6 Missense_Mutation p.S425R 0.32 deleterious(0) probably_damaging(0.934) TCGA-51-6867-01 20 2639092 2639092 G A IDH3B 3'UTR 0.42 TCGA-51-6867-01 20 30662478 30662478 A T HCK Missense_Mutation p.I128F 0.44 deleterious(0) probably_damaging(0.944) TCGA-51-6867-01 20 33302996 33302996 G A NCOA6 3'UTR 0.35 TCGA-51-6867-01 20 37400507 37400507 G C ACTR5 3'UTR 0.41 TCGA-51-6867-01 20 44190839 44190839 G T WFDC8 Missense_Mutation p.P16T 0.37 tolerated(0.62) benign(0.023) TCGA-51-6867-01 20 44665911 44665911 A T SLC12A5 Missense_Mutation p.M190L 0.42 deleterious(0.02) possibly_damaging(0.522) TCGA-51-6867-01 20 47990412 47990412 A G KCNB1 Missense_Mutation p.M562T 0.36 tolerated_low_confidence(0.19) benign(0.383) TCGA-51-6867-01 20 50090634 50090634 C T NFATC2 Missense_Mutation p.G531S 0.33 deleterious(0) probably_damaging(1) TCGA-51-6867-01 20 56188199 56188199 G T ZBP1 Intron 0.38 TCGA-51-6867-01 20 58349485 58349485 C G PHACTR3 Missense_Mutation p.L372V 0.42 tolerated(0.11) benign(0.404) TCGA-51-6867-01 20 58487438 58487438 T A SYCP2 Missense_Mutation p.D289V 0.42 deleterious(0) possibly_damaging(0.744) TCGA-51-6867-01 20 61453506 61453506 C G COL9A3 Missense_Mutation p.P156R 0.32 tolerated(0.09) unknown(0) TCGA-51-6867-01 21 10862877 10862877 A G IGHV1OR21-1 Missense_Mutation p.Q58R 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-51-6867-01 21 10934058 10934058 G T TPTE Missense_Mutation p.H307N 0.09 deleterious(0) probably_damaging(0.999) TCGA-51-6867-01 21 47754676 47754676 C T PCNT Silent p.F211F 0.28 TCGA-51-6867-01 22 19707341 19707341 T G SEPT5 Missense_Mutation p.L55R 0.34 deleterious(0.01) probably_damaging(0.96) TCGA-51-6867-01 22 27008146 27008146 G A CRYBB1 Silent p.V63V 0.33 TCGA-51-6867-01 22 30639626 30639626 T A LIF 3'UTR 0.06 TCGA-51-6867-01 22 31740955 31740955 C A PATZ1 Missense_Mutation p.A212S 0.20 tolerated(0.47) benign(0.068) TCGA-51-6867-01 22 37273784 37273784 C G NCF4 3'UTR 0.26 TCGA-51-6867-01 22 41864641 41864641 G A PHF5A Missense_Mutation p.P6L 0.11 tolerated(0.39) benign(0.33) TCGA-51-6867-01 22 42998865 42998867 TCT - POLDIP3 In_Frame_Del p.K120del 0.17 TCGA-51-6867-01 22 45128192 45128192 G T PRR5 Missense_Mutation p.S182I 0.36 deleterious(0.01) possibly_damaging(0.697) TCGA-51-6867-01 22 50893951 50893951 C T SBF1 Missense_Mutation p.V1443M 0.25 deleterious(0) probably_damaging(0.999) TCGA-51-6867-01 2 102792931 102792931 G T IL1R1 Missense_Mutation p.M474I 0.38 tolerated(0.13) benign(0.078) TCGA-51-6867-01 2 108999591 108999591 T C SULT1C4 Missense_Mutation p.Y146H 0.62 deleterious(0) probably_damaging(1) TCGA-51-6867-01 2 120129897 120129897 G A DBI 3'UTR 0.31 TCGA-51-6867-01 2 122494469 122494469 G A NIFK 5'UTR 0.29 TCGA-51-6867-01 2 136029458 136029458 C T ZRANB3 Splice_Site p.X363_splice 0.24 TCGA-51-6867-01 2 136530114 136530114 G T UBXN4 Missense_Mutation p.R316I 0.16 deleterious(0.02) benign(0.059) TCGA-51-6867-01 2 137814500 137814500 G T THSD7B Missense_Mutation p.C217F 0.48 deleterious(0.02) possibly_damaging(0.839) TCGA-51-6867-01 2 141806772 141806772 G A LRP1B Silent p.F524F 0.47 TCGA-51-6867-01 2 141946082 141946082 G T LRP1B Silent p.I307I 0.54 TCGA-51-6867-01 2 152271340 152271340 C T RIF1 Missense_Mutation p.H63Y 0.21 deleterious(0) probably_damaging(0.997) TCGA-51-6867-01 2 152684728 152684728 C A ARL5A 5'UTR 0.26 TCGA-51-6867-01 2 158291252 158291252 A - CYTIP Frame_Shift_Del p.L61* 0.36 TCGA-51-6867-01 2 160074022 160074022 G A TANC1 Missense_Mutation p.A1087T 0.46 deleterious(0.02) benign(0.415) TCGA-51-6867-01 2 166020182 166020182 C A SCN3A Missense_Mutation p.A214S 0.14 tolerated(0.09) probably_damaging(0.98) TCGA-51-6867-01 2 167760336 167760336 A T XIRP2 Missense_Mutation p.D115V 0.47 probably_damaging(0.964) TCGA-51-6867-01 2 168106692 168106692 G C XIRP2 Silent p.V2930V 0.59 TCGA-51-6867-01 2 169948370 169948370 G T DHRS9 Missense_Mutation p.D215Y 0.29 deleterious(0) possibly_damaging(0.677) TCGA-51-6867-01 2 173853509 173853509 G T RAPGEF4 Missense_Mutation p.R439L 0.21 deleterious(0) probably_damaging(1) TCGA-51-6867-01 2 176988793 176988793 G A HOXD9 Missense_Mutation p.E317K 0.15 deleterious(0) probably_damaging(0.996) TCGA-51-6867-01 2 178936319 178936319 C A PDE11A Missense_Mutation p.W282C 0.48 deleterious(0) possibly_damaging(0.889) TCGA-51-6867-01 2 179395932 179395932 G A TTN Missense_Mutation p.S35137F 0.22 TCGA-51-6867-01 2 179436153 179436153 G T TTN Silent p.A24902A 0.47 TCGA-51-6867-01 2 179437738 179437738 G T TTN Missense_Mutation p.T24374N 0.26 TCGA-51-6867-01 2 179456066 179456066 G T TTN Missense_Mutation p.T20129K 0.46 TCGA-51-6867-01 2 179590603 179590603 T C TTN Missense_Mutation p.T6816A 0.43 TCGA-51-6867-01 2 179613488 179613488 C G TTN Intron 0.42 TCGA-51-6867-01 2 179613541 179613541 G T TTN Intron 0.35 TCGA-51-6867-01 2 185800559 185800559 G C ZNF804A Missense_Mutation p.E146Q 0.31 deleterious(0) probably_damaging(0.979) TCGA-51-6867-01 2 18765849 18765849 G A NT5C1B Silent p.Y278Y 0.23 TCGA-51-6867-01 2 189872656 189872656 G T COL3A1 Missense_Mutation p.G1137C 0.48 unknown(0) TCGA-51-6867-01 2 190719313 190719313 A C PMS1 Missense_Mutation p.I439L 0.44 tolerated(0.49) benign(0.009) TCGA-51-6867-01 2 1926694 1926694 T A MYT1L Nonsense_Mutation p.R283* 0.34 TCGA-51-6867-01 2 192814951 192814951 G T TMEFF2 3'UTR 0.59 TCGA-51-6867-01 2 192863797 192863797 C T TMEFF2 Missense_Mutation p.G225D 0.16 deleterious(0) probably_damaging(0.926) TCGA-51-6867-01 2 197183457 197183457 C A HECW2 Silent p.G719G 0.47 TCGA-51-6867-01 2 197194325 197194325 C A HECW2 Missense_Mutation p.R182L 0.38 deleterious(0) probably_damaging(0.995) TCGA-51-6867-01 2 198268416 198268416 G A SF3B1 Silent p.L538L 0.47 TCGA-51-6867-01 2 201437157 201437157 C A SGOL2 Silent p.T696T 0.28 TCGA-51-6867-01 2 201807463 201807463 T C ORC2 Silent p.S122S 0.29 TCGA-51-6867-01 2 203332299 203332299 C G BMPR2 Missense_Mutation p.T102S 0.38 tolerated(0.13) probably_damaging(0.958) TCGA-51-6867-01 2 207170776 207170776 C A ZDBF2 Nonsense_Mutation p.Y508* 0.65 TCGA-51-6867-01 2 209302357 209302357 G C PTH2R Missense_Mutation p.D92H 0.56 deleterious(0) probably_damaging(0.998) TCGA-51-6867-01 2 228882210 228882210 C A SPHKAP Silent p.S1120S 0.60 TCGA-51-6867-01 2 228882244 228882244 G A SPHKAP Missense_Mutation p.P1109L 0.23 deleterious(0) probably_damaging(0.922) TCGA-51-6867-01 2 230914484 230914484 G A SLC16A14 Silent p.V132V 0.27 TCGA-51-6867-01 2 233398656 233398656 C A CHRND Missense_Mutation p.L355M 0.10 deleterious(0) probably_damaging(1) TCGA-51-6867-01 2 233398657 233398657 T C CHRND Missense_Mutation p.L355P 0.10 deleterious(0.02) probably_damaging(1) TCGA-51-6867-01 2 234344961 234344961 G C DGKD Splice_Site p.X232_splice 0.28 TCGA-51-6867-01 2 238267688 238267688 G A COL6A3 Missense_Mutation p.P2133L 0.66 benign(0.015) TCGA-51-6867-01 2 238267689 238267689 G T COL6A3 Missense_Mutation p.P2133T 0.66 benign(0.165) TCGA-51-6867-01 2 238277354 238277355 CT G COL6A3 Frame_Shift_Del p.Q1584Pfs*22 0.11 TCGA-51-6867-01 2 238277821 238277821 C T COL6A3 Splice_Site p.X1429_splice 0.28 TCGA-51-6867-01 2 241725902 241725902 C G KIF1A Missense_Mutation p.R153P 0.62 deleterious(0) probably_damaging(0.996) TCGA-51-6867-01 2 27664048 27664048 G T NRBP1 Splice_Site p.X461_splice 0.42 TCGA-51-6867-01 2 27719730 27719730 G T GCKR 5'UTR 0.30 TCGA-51-6867-01 2 28352212 28352212 G T BRE Silent p.V215V 0.42 TCGA-51-6867-01 2 36583748 36583748 G A CRIM1 Missense_Mutation p.E105K 0.16 tolerated(0.05) benign(0.049) TCGA-51-6867-01 2 37483890 37483890 A G PRKD3 Silent p.F776F 0.41 TCGA-51-6867-01 2 70680379 70680379 C G TGFA Missense_Mutation p.G149A 0.14 tolerated_low_confidence(0.06) possibly_damaging(0.814) TCGA-51-6867-01 2 71012590 71012590 C T FIGLA Missense_Mutation p.S189N 0.38 tolerated(0.09) benign(0.002) TCGA-51-6867-01 2 7137077 7137077 G T RNF144A Missense_Mutation p.R7L 0.31 tolerated_low_confidence(0.06) possibly_damaging(0.505) TCGA-51-6867-01 2 71577120 71577120 A T ZNF638 Missense_Mutation p.S346C 0.36 deleterious(0) possibly_damaging(0.759) TCGA-51-6867-01 2 7170265 7170265 C G RNF144A Missense_Mutation p.F222L 0.39 tolerated(0.06) probably_damaging(0.995) TCGA-51-6867-01 2 75081520 75081520 C T HK2 Missense_Mutation p.T55I 0.35 deleterious(0.01) probably_damaging(1) TCGA-51-6867-01 2 90192990 90192990 C T IGKV1D-13 Missense_Mutation p.L15F 0.22 tolerated(0.08) possibly_damaging(0.529) TCGA-51-6867-01 2 90212014 90212014 G T IGKV3D-11 Missense_Mutation p.G36W 0.17 deleterious(0) probably_damaging(0.991) TCGA-51-6867-01 2 97030235 97030235 A T NCAPH Missense_Mutation p.Q535L 0.39 tolerated(0.17) benign(0.013) TCGA-51-6867-01 3 101573904 101573904 A C NFKBIZ Splice_Site p.X482_splice 0.25 TCGA-51-6867-01 3 102196358 102196358 G T ZPLD1 Nonsense_Mutation p.G398* 0.38 TCGA-51-6867-01 3 112185010 112185010 G A BTLA Missense_Mutation p.A272V 0.24 tolerated(0.07) benign(0.1) TCGA-51-6867-01 3 113098393 113098393 T C WDR52 Silent p.L686L 0.38 TCGA-51-6867-01 3 113377736 113377736 T C KIAA2018 Silent p.L931L 0.28 TCGA-51-6867-01 3 119102073 119102073 G T ARHGAP31 Nonsense_Mutation p.E228* 0.20 TCGA-51-6867-01 3 12046070 12046070 C G SYN2 RNA 0.45 TCGA-51-6867-01 3 122274828 122274828 C A PARP9 Missense_Mutation p.V99F 0.59 deleterious(0.02) benign(0.396) TCGA-51-6867-01 3 122288339 122288339 C G DTX3L Missense_Mutation p.T468S 0.22 tolerated(0.16) benign(0.15) TCGA-51-6867-01 3 12632467 12632467 T A RAF1 Silent p.T400T 0.62 TCGA-51-6867-01 3 127500645 127500645 G A MGLL Silent p.F83F 0.17 TCGA-51-6867-01 3 134670645 134670645 C G EPHB1 Missense_Mutation p.L186V 0.14 deleterious(0) probably_damaging(0.927) TCGA-51-6867-01 3 138413743 138413743 C G PIK3CB Missense_Mutation p.A593P 0.73 tolerated(0.12) probably_damaging(0.917) TCGA-51-6867-01 3 14171032 14171032 C T TMEM43 Missense_Mutation p.L45F 0.20 tolerated(0.24) benign(0.318) TCGA-51-6867-01 3 142430952 142430952 C G PLS1 3'UTR 0.12 TCGA-51-6867-01 3 146171917 146171917 C T PLSCR2 Missense_Mutation p.G192S 0.51 deleterious(0) probably_damaging(1) TCGA-51-6867-01 3 147108804 147108804 G A ZIC4 Silent p.L356L 0.24 TCGA-51-6867-01 3 147114110 147114110 C A ZIC4 Missense_Mutation p.A123S 0.54 tolerated(0.14) benign(0.016) TCGA-51-6867-01 3 148792136 148792136 C G HLTF Splice_Site p.X132_splice 0.20 TCGA-51-6867-01 3 14939552 14939552 G A FGD5 Missense_Mutation p.E1006K 0.62 deleterious(0) possibly_damaging(0.693) TCGA-51-6867-01 3 150127327 150127327 G C TSC22D2 Missense_Mutation p.E64Q 0.19 deleterious(0.04) benign(0.412) TCGA-51-6867-01 3 150903184 150903184 G T MED12L Missense_Mutation p.G521V 0.29 deleterious(0) probably_damaging(1) TCGA-51-6867-01 3 150931602 150931602 G A P2RY14 Missense_Mutation p.T168I 0.59 tolerated(0.07) benign(0.232) TCGA-51-6867-01 3 160679622 160679622 G T PPM1L Missense_Mutation p.Q166H 0.61 tolerated(0.09) possibly_damaging(0.612) TCGA-51-6867-01 3 169557690 169557690 C G LRRC31 3'UTR 0.05 TCGA-51-6867-01 3 169847206 169847206 G A PHC3 Nonsense_Mutation p.Q352* 0.05 TCGA-51-6867-01 3 184007230 184007230 G C ECE2 Missense_Mutation p.E578D 0.48 tolerated(0.09) probably_damaging(0.998) TCGA-51-6867-01 3 186457156 186457156 T A KNG1 Missense_Mutation p.W360R 0.27 deleterious(0) probably_damaging(0.997) TCGA-51-6867-01 3 186506968 186506972 TGAAG - EIF4A2 Frame_Shift_Del p.E379Rfs*7 0.12 TCGA-51-6867-01 3 194146194 194146194 C T ATP13A3 Missense_Mutation p.D1064N 0.06 tolerated(0.19) benign(0.033) TCGA-51-6867-01 3 194387207 194387207 G A LSG1 Silent p.N107N 0.06 TCGA-51-6867-01 3 195935297 195935297 G A ZDHHC19 Silent p.R181R 0.80 TCGA-51-6867-01 3 196388449 196388449 G T NRROS Silent p.R645R 0.83 TCGA-51-6867-01 3 27233723 27233723 G C NEK10 Missense_Mutation p.P768A 0.30 tolerated(0.11) benign(0.131) TCGA-51-6867-01 3 38597246 38597246 C A SCN5A Silent p.G1481G 0.67 TCGA-51-6867-01 3 38945512 38945512 C A SCN11A Missense_Mutation p.Q562H 0.51 tolerated(0.54) benign(0.001) TCGA-51-6867-01 3 42265128 42265128 C A TRAK1 Missense_Mutation p.P921T 0.57 deleterious(0) probably_damaging(0.998) TCGA-51-6867-01 3 42907171 42907171 G T ACKR2 3'UTR 0.47 TCGA-51-6867-01 3 52521398 52521398 G C NISCH Missense_Mutation p.E630D 0.27 tolerated(0.26) benign(0.104) TCGA-51-6867-01 3 58552426 58552426 A T FAM107A Intron 0.65 TCGA-51-6867-01 3 71821925 71821925 C T PROK2 Missense_Mutation p.A114T 0.64 tolerated(0.44) benign(0.078) TCGA-51-6867-01 3 88105147 88105147 G A CGGBP1 5'UTR 0.29 TCGA-51-6867-01 3 96963181 96963181 G C EPHA6 Intron 0.35 TCGA-51-6867-01 3 97439224 97439224 G C EPHA6 Missense_Mutation p.E968D 0.09 deleterious(0.01) probably_damaging(0.995) TCGA-51-6867-01 4 115998011 115998011 C G NDST4 Missense_Mutation p.R61T 0.66 tolerated_low_confidence(0.07) benign(0.264) TCGA-51-6867-01 4 141484580 141484580 T C UCP1 Missense_Mutation p.R140G 0.73 deleterious(0) probably_damaging(1) TCGA-51-6867-01 4 158257752 158257752 G C GRIA2 Missense_Mutation p.R566T 0.26 deleterious(0) probably_damaging(0.999) TCGA-51-6867-01 4 164394426 164394426 A G TKTL2 Missense_Mutation p.M154T 0.66 deleterious(0.02) benign(0.219) TCGA-51-6867-01 4 177113904 177113904 T C SPATA4 Missense_Mutation p.I188V 0.33 tolerated(0.18) probably_damaging(0.998) TCGA-51-6867-01 4 187201699 187201699 C T F11 Missense_Mutation p.S367F 0.53 deleterious(0) probably_damaging(0.997) TCGA-51-6867-01 4 1902957 1902957 C T WHSC1 Silent p.I192I 0.63 TCGA-51-6867-01 4 41640980 41640980 G A LIMCH1 Missense_Mutation p.A323T 0.67 tolerated(0.2) possibly_damaging(0.733) TCGA-51-6867-01 4 70146669 70146669 G C UGT2B28 Missense_Mutation p.D151H 0.27 deleterious(0) probably_damaging(0.998) TCGA-51-6867-01 4 71255587 71255587 G T SMR3B 3'UTR 0.35 TCGA-51-6867-01 4 84361020 84361020 T A HELQ Missense_Mutation p.S602C 0.65 deleterious(0.05) benign(0.065) TCGA-51-6867-01 4 85525423 85525423 G C CDS1 Missense_Mutation p.D49H 0.26 deleterious(0.01) possibly_damaging(0.592) TCGA-51-6867-01 4 88235046 88235046 T A HSD17B13 Missense_Mutation p.K208N 0.61 deleterious(0.01) possibly_damaging(0.771) TCGA-51-6867-01 4 94751092 94751092 G C ATOH1 Missense_Mutation p.G339R 0.63 deleterious(0) probably_damaging(0.999) TCGA-51-6867-01 5 10261820 10261820 G C CCT5 Missense_Mutation p.R381T 0.12 deleterious(0.02) possibly_damaging(0.825) TCGA-51-6867-01 5 1073757 1073757 C A SLC12A7 Silent p.R744R 0.22 TCGA-51-6867-01 5 11098765 11098765 C A CTNND2 Silent p.L853L 0.31 TCGA-51-6867-01 5 115298703 115298703 G T AQPEP Missense_Mutation p.R130L 0.50 deleterious(0.05) possibly_damaging(0.81) TCGA-51-6867-01 5 115627220 115627220 G T COMMD10 Nonsense_Mutation p.E173* 0.15 TCGA-51-6867-01 5 127595509 127595509 T A FBN2 Missense_Mutation p.S2793C 0.34 deleterious(0.01) probably_damaging(0.95) TCGA-51-6867-01 5 135489507 135489507 G A SMAD5 Missense_Mutation p.G20S 0.78 tolerated(0.06) probably_damaging(0.988) TCGA-51-6867-01 5 140182034 140182034 G C PCDHA3 Missense_Mutation p.V418L 0.63 tolerated_low_confidence(0.1) benign(0.163) TCGA-51-6867-01 5 140214191 140214191 C A PCDHA7 Missense_Mutation p.L75M 0.62 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-51-6867-01 5 140216017 140216017 G T PCDHA7 Silent p.S683S 0.71 TCGA-51-6867-01 5 140782999 140782999 G T PCDHGA9 Silent p.P160P 0.65 TCGA-51-6867-01 5 149247692 149247692 G A PDE6A Missense_Mutation p.S722L 0.40 deleterious(0.01) benign(0.01) TCGA-51-6867-01 5 149751629 149751629 C G TCOF1 Missense_Mutation p.P234A 0.60 tolerated(0.56) benign(0.168) TCGA-51-6867-01 5 151304166 151304166 A G GLRA1 5'UTR 0.72 TCGA-51-6867-01 5 156770086 156770086 C T FNDC9 Silent p.E153E 0.06 TCGA-51-6867-01 5 157078572 157078572 C G SOX30 Missense_Mutation p.G172A 0.66 deleterious_low_confidence(0.01) benign(0.11) TCGA-51-6867-01 5 160047583 160047583 G T ATP10B Missense_Mutation p.H729Q 0.52 tolerated(0.06) probably_damaging(0.99) TCGA-51-6867-01 5 169141389 169141389 G T DOCK2 Missense_Mutation p.W623C 0.74 deleterious(0) probably_damaging(0.998) TCGA-51-6867-01 5 170232829 170232829 C A GABRP Silent p.T217T 0.64 TCGA-51-6867-01 5 177574570 177574570 G A RMND5B Missense_Mutation p.M299I 0.31 tolerated(0.23) benign(0.001) TCGA-51-6867-01 5 19544041 19544041 T C CDH18 Missense_Mutation p.T443A 0.68 tolerated(1) benign(0.003) TCGA-51-6867-01 5 19612703 19612703 A T CDH18 Silent p.I217I 0.32 TCGA-51-6867-01 5 33546232 33546232 T - ADAMTS12 Frame_Shift_Del p.R1460Dfs*93 0.29 TCGA-51-6867-01 5 34845691 34845691 G A TTC23L Silent p.K56K 0.05 TCGA-51-6867-01 5 35921190 35921190 C A CAPSL Missense_Mutation p.M11I 0.29 deleterious(0.03) benign(0.354) TCGA-51-6867-01 5 38958920 38958920 T C RICTOR Missense_Mutation p.Y731C 0.33 deleterious(0) probably_damaging(0.999) TCGA-51-6867-01 5 45262155 45262155 C A HCN1 Silent p.S847S 0.33 TCGA-51-6867-01 5 45262159 45262159 G C HCN1 Missense_Mutation p.S846W 0.54 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-51-6867-01 5 5464987 5464987 G T KIAA0947 Missense_Mutation p.R1847I 0.12 deleterious(0) probably_damaging(0.997) TCGA-51-6867-01 5 56189356 56189356 A C MAP3K1 Splice_Site p.X1464_splice 0.63 TCGA-51-6867-01 5 61847075 61847075 A C IPO11 Missense_Mutation p.Y831S 0.66 tolerated(0.13) probably_damaging(0.927) TCGA-51-6867-01 5 74842890 74842890 C A POLK Missense_Mutation p.L15I 0.29 tolerated(0.07) benign(0.213) TCGA-51-6867-01 5 78076153 78076153 C A ARSB 3'UTR 0.50 TCGA-51-6867-01 5 79372818 79372818 C A THBS4 Missense_Mutation p.P678H 0.66 deleterious(0) probably_damaging(0.988) TCGA-51-6867-01 5 89939728 89939728 G T GPR98 Missense_Mutation p.G888C 0.73 probably_damaging(0.979) TCGA-51-6867-01 5 89939729 89939729 G T GPR98 Missense_Mutation p.G888V 0.73 probably_damaging(0.972) TCGA-51-6867-01 5 90136780 90136780 C A GPR98 Missense_Mutation p.A5666D 0.59 benign(0.07) TCGA-51-6867-01 5 90136781 90136781 C T GPR98 Silent p.A5666A 0.58 TCGA-51-6867-01 6 108225854 108225854 C T SEC63 Missense_Mutation p.V345I 0.35 tolerated(0.75) benign(0.002) TCGA-51-6867-01 6 110300411 110300411 C A GPR6 Missense_Mutation p.D32E 0.28 tolerated_low_confidence(0.28) benign(0.007) TCGA-51-6867-01 6 110301349 110301349 G T GPR6 Missense_Mutation p.C345F 0.24 deleterious(0.01) probably_damaging(0.982) TCGA-51-6867-01 6 117113610 117113610 G T GPRC6A Missense_Mutation p.L826M 0.35 deleterious(0.02) probably_damaging(0.986) TCGA-51-6867-01 6 117113611 117113611 G T GPRC6A Silent p.I825I 0.36 TCGA-51-6867-01 6 118804910 118804910 C G CEP85L Missense_Mutation p.D520H 0.22 deleterious(0) probably_damaging(1) TCGA-51-6867-01 6 137476176 137476176 G A IL22RA2 Missense_Mutation p.S125L 0.23 tolerated(0.13) benign(0.4) TCGA-51-6867-01 6 138199976 138199976 C T TNFAIP3 Missense_Mutation p.P465L 0.41 deleterious(0) probably_damaging(0.999) TCGA-51-6867-01 6 152650930 152650930 C T SYNE1 Missense_Mutation p.E4964K 0.51 benign(0.16) TCGA-51-6867-01 6 157522329 157522329 G T ARID1B Missense_Mutation p.R1534L 0.23 probably_damaging(0.993) TCGA-51-6867-01 6 157739917 157739917 C A TMEM242 Missense_Mutation p.G75V 0.28 deleterious(0) probably_damaging(0.996) TCGA-51-6867-01 6 158490658 158490658 C T SYNJ2 Silent p.G631G 0.21 TCGA-51-6867-01 6 160511089 160511089 C T IGF2R Silent p.F2203F 0.15 TCGA-51-6867-01 6 162683693 162683693 C A PARK2 Silent p.A92A 0.29 TCGA-51-6867-01 6 167709666 167709666 G C UNC93A Missense_Mutation p.G139A 0.28 deleterious(0) probably_damaging(1) TCGA-51-6867-01 6 17543294 17543294 A T CAP2 Missense_Mutation p.N377Y 0.53 deleterious(0) probably_damaging(0.967) TCGA-51-6867-01 6 24556918 24556918 G T KIAA0319 Missense_Mutation p.P925H 0.55 deleterious(0) probably_damaging(0.98) TCGA-51-6867-01 6 26197399 26197399 C T HIST1H3D Missense_Mutation p.R27Q 0.23 deleterious_low_confidence(0.01) benign(0) TCGA-51-6867-01 6 29079891 29079891 G T OR2J3 Missense_Mutation p.C75F 0.60 deleterious(0) benign(0.211) TCGA-51-6867-01 6 292508 292508 G T DUSP22 5'UTR 0.08 TCGA-51-6867-01 6 29394728 29394728 C A OR11A1 Missense_Mutation p.A231S 0.60 tolerated(1) benign(0.003) TCGA-51-6867-01 6 29912075 29912075 C T HLA-A Nonsense_Mutation p.Q266* 0.13 TCGA-51-6867-01 6 30043598 30043598 G A RNF39 5'UTR 0.13 TCGA-51-6867-01 6 30595875 30595875 G A ATAT1 Missense_Mutation p.V118M 0.22 deleterious(0.02) benign(0.023) TCGA-51-6867-01 6 31170721 31170721 T G HCG27 3'UTR 0.62 TCGA-51-6867-01 6 32119586 32119586 C G PRRT1 Missense_Mutation p.G7R 0.24 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-51-6867-01 6 32158953 32158953 C G GPSM3 3'UTR 0.14 TCGA-51-6867-01 6 32178568 32178568 C A NOTCH4 Silent p.G942G 0.54 TCGA-51-6867-01 6 33284637 33284637 C A ZBTB22 Silent p.L19L 0.62 TCGA-51-6867-01 6 39554122 39554122 A T KIF6 Missense_Mutation p.M302K 0.46 deleterious(0) probably_damaging(0.997) TCGA-51-6867-01 6 4037716 4037716 A G PRPF4B Missense_Mutation p.R442G 0.11 deleterious(0.03) benign(0.152) TCGA-51-6867-01 6 45515102 45515102 A G RUNX2 3'UTR 0.21 TCGA-51-6867-01 6 50786576 50786576 G A TFAP2B 5'UTR 0.11 TCGA-51-6867-01 6 50811096 50811096 C G TFAP2B Missense_Mutation p.H458Q 0.57 tolerated(0.06) benign(0.022) TCGA-51-6867-01 6 52051183 52051183 T C IL17A 5'Flank 0.73 TCGA-51-6867-01 6 54735217 54735217 A T FAM83B Missense_Mutation p.E58V 0.20 deleterious(0) benign(0.049) TCGA-51-6867-01 6 56397240 56397240 A T DST Silent p.I3047I 0.14 TCGA-51-6867-01 6 57467141 57467141 A G PRIM2 3'UTR 0.24 TCGA-51-6867-01 6 71571416 71571416 G T B3GAT2 Missense_Mutation p.L308I 0.61 deleterious(0.02) possibly_damaging(0.762) TCGA-51-6867-01 6 73904319 73904319 G A KCNQ5 Missense_Mutation p.V680M 0.12 tolerated(0.13) possibly_damaging(0.88) TCGA-51-6867-01 6 76640670 76640670 C A IMPG1 Missense_Mutation p.R748M 0.10 deleterious(0) possibly_damaging(0.907) TCGA-51-6867-01 6 76660685 76660685 G A IMPG1 Missense_Mutation p.T473I 0.16 tolerated(0.09) benign(0.323) TCGA-51-6867-01 6 76744403 76744403 A T IMPG1 Missense_Mutation p.F135I 0.21 deleterious(0) probably_damaging(0.982) TCGA-51-6867-01 6 82459665 82459665 T G FAM46A Missense_Mutation p.H359P 0.16 deleterious(0.01) probably_damaging(0.968) TCGA-51-6867-01 6 83937089 83937089 C G ME1 Missense_Mutation p.E414Q 0.18 deleterious(0.01) probably_damaging(1) TCGA-51-6867-01 6 84865020 84865020 C T KIAA1009 Missense_Mutation p.M997I 0.12 tolerated(1) benign(0.023) TCGA-51-6867-01 6 86203660 86203660 C A NT5E Missense_Mutation p.H555N 0.16 tolerated(0.38) benign(0) TCGA-51-6867-01 6 86203661 86203661 A T NT5E Missense_Mutation p.H555L 0.16 tolerated(0.37) benign(0) TCGA-51-6867-01 6 86243469 86243469 A G SNX14 Missense_Mutation p.V553A 0.17 tolerated(1) benign(0.002) TCGA-51-6867-01 6 99825357 99825357 T A COQ3 Missense_Mutation p.N131Y 0.38 deleterious(0.01) benign(0.212) TCGA-51-6867-01 7 100677349 100677349 C T MUC17 Silent p.T884T 0.23 TCGA-51-6867-01 7 100856150 100856150 C A PLOD3 Missense_Mutation p.Q284H 0.37 tolerated(0.05) benign(0.163) TCGA-51-6867-01 7 105615355 105615355 G T CDHR3 Missense_Mutation p.G38W 0.22 deleterious(0) possibly_damaging(0.892) TCGA-51-6867-01 7 107704324 107704324 T C LAMB4 Silent p.P981P 0.24 TCGA-51-6867-01 7 110763456 110763456 C A LRRN3 Missense_Mutation p.P210T 0.43 deleterious(0.02) possibly_damaging(0.737) TCGA-51-6867-01 7 122635521 122635521 G A TAS2R16 Silent p.R56R 0.42 TCGA-51-6867-01 7 128846386 128846386 A G SMO Missense_Mutation p.I408V 0.37 tolerated(0.4) benign(0.124) TCGA-51-6867-01 7 133812416 133812416 A T LRGUK Missense_Mutation p.E99V 0.44 deleterious(0) possibly_damaging(0.848) TCGA-51-6867-01 7 137170138 137170138 G T DGKI Silent p.S803S 0.43 TCGA-51-6867-01 7 138441239 138441239 T A ATP6V0A4 Missense_Mutation p.E229V 0.48 deleterious(0) probably_damaging(0.962) TCGA-51-6867-01 7 139791787 139791787 C T KDM7A Missense_Mutation p.G850S 0.67 tolerated(0.29) benign(0.007) TCGA-51-6867-01 7 140111633 140111633 G T RAB19 Intron 0.21 TCGA-51-6867-01 7 140111634 140111634 G T RAB19 Intron 0.21 TCGA-51-6867-01 7 140257942 140257942 C T DENND2A Splice_Site p.X653_splice 0.46 TCGA-51-6867-01 7 140301423 140301423 T A DENND2A Missense_Mutation p.T259S 0.25 tolerated(0.73) benign(0.001) TCGA-51-6867-01 7 140706290 140706290 C A MRPS33 Missense_Mutation p.K87N 0.16 tolerated(0.25) unknown(0) TCGA-51-6867-01 7 142099467 142099467 G T TRBV7-8 Missense_Mutation p.A112D 0.16 deleterious(0) probably_damaging(0.999) TCGA-51-6867-01 7 143141259 143141259 T C TAS2R60 Silent p.S238S 0.54 TCGA-51-6867-01 7 1476391 1476391 C T MICALL2 Missense_Mutation p.E860K 0.69 deleterious(0.02) possibly_damaging(0.544) TCGA-51-6867-01 7 1476454 1476454 C G MICALL2 Missense_Mutation p.E839Q 0.68 tolerated(0.06) possibly_damaging(0.453) TCGA-51-6867-01 7 147914575 147914575 C A CNTNAP2 Missense_Mutation p.S1069Y 0.31 deleterious(0.02) probably_damaging(0.916) TCGA-51-6867-01 7 148768387 148768387 C A ZNF786 Nonsense_Mutation p.E493* 0.60 TCGA-51-6867-01 7 148951307 148951307 G A ZNF212 Missense_Mutation p.G430D 0.32 tolerated(0.06) possibly_damaging(0.801) TCGA-51-6867-01 7 149152281 149152281 C A ZNF777 Missense_Mutation p.G278V 0.62 deleterious(0) probably_damaging(1) TCGA-51-6867-01 7 150440207 150440207 T C GIMAP5 3'UTR 0.49 TCGA-51-6867-01 7 151261161 151261161 C A PRKAG2 Intron 0.15 TCGA-51-6867-01 7 151970830 151970830 G A KMT2C Silent p.F324F 0.05 TCGA-51-6867-01 7 40118419 40118419 G T CDK13 Missense_Mutation p.D1000Y 0.64 deleterious(0) probably_damaging(0.916) TCGA-51-6867-01 7 4167104 4167104 G T SDK1 Missense_Mutation p.Q1305H 0.62 deleterious(0.02) benign(0.432) TCGA-51-6867-01 7 44098952 44098952 G T DBNL Splice_Site p.X288_splice 0.56 TCGA-51-6867-01 7 45753488 45753488 G T ADCY1 Missense_Mutation p.R1085I 0.68 deleterious_low_confidence(0.01) benign(0.372) TCGA-51-6867-01 7 65225056 65225056 G A SNORA15 RNA 0.24 TCGA-51-6867-01 7 71275369 71275369 C T CALN1 Missense_Mutation p.E204K 0.53 deleterious(0.05) probably_damaging(0.987) TCGA-51-6867-01 7 72891601 72891601 T C BAZ1B Silent p.E730E 0.28 TCGA-51-6867-01 7 75633121 75633121 C G STYXL1 Missense_Mutation p.E218Q 0.52 deleterious(0.01) benign(0.183) TCGA-51-6867-01 7 780557 780557 C G HEATR2 Silent p.L294L 0.38 TCGA-51-6867-01 7 87174141 87174141 G C ABCB1 Missense_Mutation p.L688V 0.47 tolerated(0.45) benign(0) TCGA-51-6867-01 7 87772378 87772378 G A ADAM22 Missense_Mutation p.E420K 0.20 tolerated(0.22) benign(0.143) TCGA-51-6867-01 7 87913314 87913314 C A STEAP4 Nonsense_Mutation p.E91* 0.28 TCGA-51-6867-01 7 90894757 90894757 C T FZD1 Missense_Mutation p.R188C 0.51 deleterious(0) probably_damaging(1) TCGA-51-6867-01 7 91936774 91936774 G A ANKIB1 Missense_Mutation p.G97E 0.26 deleterious(0) probably_damaging(0.99) TCGA-51-6867-01 8 100520107 100520107 C G VPS13B Missense_Mutation p.P1423A 0.10 tolerated(0.1) benign(0.348) TCGA-51-6867-01 8 101092455 101092455 A G RGS22 Silent p.Y82Y 0.51 TCGA-51-6867-01 8 105368413 105368413 C T DCSTAMP Missense_Mutation p.A467V 0.19 deleterious(0.05) benign(0.014) TCGA-51-6867-01 8 109796833 109796833 T C TMEM74 Silent p.S165S 0.53 TCGA-51-6867-01 8 110495325 110495325 G A PKHD1L1 Silent p.V3189V 0.49 TCGA-51-6867-01 8 113988342 113988342 C A CSMD3 Nonsense_Mutation p.E356* 0.17 TCGA-51-6867-01 8 119122468 119122468 G C EXT1 Missense_Mutation p.T273R 0.69 tolerated(0.36) probably_damaging(1) TCGA-51-6867-01 8 121262996 121262996 G T COL14A1 Missense_Mutation p.V915L 0.66 tolerated(0.07) benign(0.265) TCGA-51-6867-01 8 125570071 125570071 C T MTSS1 Missense_Mutation p.V361M 0.85 tolerated(0.26) benign(0.004) TCGA-51-6867-01 8 133596004 133596004 C A LRRC6 Missense_Mutation p.G388V 0.75 tolerated(0.34) benign(0.001) TCGA-51-6867-01 8 139165061 139165061 A T FAM135B Missense_Mutation p.Y553N 0.72 deleterious(0.02) possibly_damaging(0.781) TCGA-51-6867-01 8 144295155 144295155 G A GPIHBP1 Missense_Mutation p.G5R 0.62 tolerated(0.54) probably_damaging(0.956) TCGA-51-6867-01 8 144943459 144943459 C T EPPK1 Silent p.E1321E 0.20 TCGA-51-6867-01 8 145158085 145158086 CG - SHARPIN Frame_Shift_Del p.G83Pfs*76 0.45 TCGA-51-6867-01 8 146278096 146278096 G T C8orf33 Missense_Mutation p.C44F 0.64 tolerated_low_confidence(0.26) benign(0.072) TCGA-51-6867-01 8 1497519 1497519 C A DLGAP2 Missense_Mutation p.D220E 0.39 deleterious(0) benign(0.266) TCGA-51-6867-01 8 16971695 16971695 C T MICU3 Missense_Mutation p.R451C 0.17 deleterious(0) probably_damaging(0.964) TCGA-51-6867-01 8 22037285 22037285 A G BMP1 Missense_Mutation p.R302G 0.22 deleterious(0) probably_damaging(0.996) TCGA-51-6867-01 8 27886837 27886837 C T NUGGC Silent p.E700E 0.20 TCGA-51-6867-01 8 2807806 2807806 C A CSMD1 Missense_Mutation p.A3421S 0.31 benign(0.002) TCGA-51-6867-01 8 2964118 2964118 C A CSMD1 Missense_Mutation p.G2294V 0.31 probably_damaging(1) TCGA-51-6867-01 8 30210794 30210794 A C TUBBP1 RNA 0.42 TCGA-51-6867-01 8 30703471 30703471 T G TEX15 Silent p.V1021V 0.35 TCGA-51-6867-01 8 36671814 36671814 G A KCNU1 Silent p.T274T 0.19 TCGA-51-6867-01 8 48809754 48809754 C G PRKDC Missense_Mutation p.E1189Q 0.26 benign(0.142) TCGA-51-6867-01 8 71068869 71068869 C A NCOA2 Missense_Mutation p.M577I 0.08 tolerated(0.53) benign(0.147) TCGA-51-6867-01 8 73848725 73848725 A G KCNB2 Missense_Mutation p.M379V 0.28 deleterious(0) probably_damaging(0.993) TCGA-51-6867-01 8 77763350 77763350 G T ZFHX4 Missense_Mutation p.R1398L 0.29 benign(0.433) TCGA-51-6867-01 8 77767864 77767864 A G ZFHX4 Missense_Mutation p.S2903G 0.30 probably_damaging(0.961) TCGA-51-6867-01 8 77776632 77776632 C A ZFHX4 Missense_Mutation p.T3561N 0.42 probably_damaging(0.99) TCGA-51-6867-01 8 82605920 82605920 C T SLC10A5 Missense_Mutation p.D430N 0.23 tolerated(0.24) benign(0.001) TCGA-51-6867-01 8 87076519 87076519 G C PSKH2 Missense_Mutation p.A176G 0.25 tolerated(0.31) benign(0.004) TCGA-51-6867-01 8 89131014 89131014 G T MMP16 Silent p.A262A 0.57 TCGA-51-6867-01 8 95518826 95518826 C A KIAA1429 Silent p.T1333T 0.46 TCGA-51-6867-01 8 99139924 99139924 A T POP1 Nonsense_Mutation p.R82* 0.54 TCGA-51-6867-01 8 99961517 99961517 C T OSR2 Missense_Mutation p.R113W 0.56 deleterious(0) possibly_damaging(0.779) TCGA-51-6867-01 9 104170330 104170330 G T ZNF189 Missense_Mutation p.D94Y 0.76 deleterious(0.02) benign(0.226) TCGA-51-6867-01 9 118969826 118969826 G C PAPPA Missense_Mutation p.E524Q 0.14 deleterious(0.02) possibly_damaging(0.728) TCGA-51-6867-01 9 118974113 118974113 C A PAPPA Missense_Mutation p.P607H 0.57 deleterious(0) probably_damaging(0.971) TCGA-51-6867-01 9 119461705 119461705 G T TRIM32 Missense_Mutation p.G562C 0.70 tolerated(0.05) probably_damaging(1) TCGA-51-6867-01 9 130453163 130453163 G T STXBP1 3'UTR 0.34 TCGA-51-6867-01 9 139307329 139307329 A G PMPCA Missense_Mutation p.D141G 0.62 deleterious(0) probably_damaging(0.999) TCGA-51-6867-01 9 140320758 140320781 GAGTGGCCAACTTCCAGCTGGCAA CTGTG NOXA1 Frame_Shift_Del p.G79Afs*18 0.37 TCGA-51-6867-01 9 141070070 141070070 C T TUBBP5 RNA 0.25 TCGA-51-6867-01 9 16419520 16419520 C A BNC2 Missense_Mutation p.A923S 0.71 tolerated(0.27) benign(0.001) TCGA-51-6867-01 9 17342412 17342412 A G CNTLN Missense_Mutation p.K619R 0.57 deleterious(0.02) benign(0.165) TCGA-51-6867-01 9 21202067 21202067 C A IFNA7 Missense_Mutation p.R33L 0.61 tolerated(0.6) possibly_damaging(0.64) TCGA-51-6867-01 9 35044362 35044362 G A C9orf131 Missense_Mutation p.G579E 0.30 tolerated(0.31) possibly_damaging(0.88) TCGA-51-6867-01 9 5753566 5753566 A G KIAA1432 Missense_Mutation p.I508V 0.46 tolerated(0.91) benign(0.001) TCGA-51-6867-01 9 65505610 65505610 A T SPATA31A7 Silent p.G650G 0.20 TCGA-51-6867-01 9 72130967 72130967 G T APBA1 Missense_Mutation p.P387H 0.67 deleterious(0) probably_damaging(0.999) TCGA-51-6867-01 9 72472869 72472869 G C C9orf135 Missense_Mutation p.R142T 0.25 deleterious(0.04) probably_damaging(0.994) TCGA-51-6867-01 9 79634922 79634922 C A FOXB2 Missense_Mutation p.H118N 0.65 tolerated_low_confidence(0.36) unknown(0) TCGA-51-6867-01 9 79634923 79634923 A C FOXB2 Missense_Mutation p.H118P 0.61 tolerated_low_confidence(0.21) unknown(0) TCGA-51-6867-01 9 90503006 90503006 G T SPATA31E1 Missense_Mutation p.D1202Y 0.60 tolerated(0.85) possibly_damaging(0.655) TCGA-51-6867-01 9 95277417 95277417 G T ECM2 Missense_Mutation p.Q184K 0.57 tolerated(0.1) benign(0.164) TCGA-51-6867-01 9 98229708 98229708 C A PTCH1 Splice_Site p.X751_splice 0.35 TCGA-51-6867-01 9 98229709 98229709 T A PTCH1 Splice_Site p.X751_splice 0.37 TCGA-51-6867-01 X 100604932 100604932 G T BTK Missense_Mutation p.R641S 0.73 deleterious(0) probably_damaging(0.994) TCGA-51-6867-01 X 101805017 101805017 G C NXF4 RNA 0.22 TCGA-51-6867-01 X 105152954 105152954 G A NRK Missense_Mutation p.G442R 0.08 tolerated(0.26) benign(0.408) TCGA-51-6867-01 X 105937505 105937505 G T RNF128 Missense_Mutation p.W64C 0.67 deleterious(0) probably_damaging(1) TCGA-51-6867-01 X 118972327 118972327 G A UPF3B Intron 0.12 TCGA-51-6867-01 X 123020115 123020117 TTG - XIAP In_Frame_Del p.C203del 0.41 TCGA-51-6867-01 X 12817403 12817403 T C PRPS2 Missense_Mutation p.L67P 0.68 deleterious(0) probably_damaging(0.995) TCGA-51-6867-01 X 135428361 135428361 A T GPR112 Silent p.T832T 0.73 TCGA-51-6867-01 X 135428367 135428367 A T GPR112 Missense_Mutation p.R834S 0.73 tolerated(0.1) benign(0.002) TCGA-51-6867-01 X 146366167 146366167 C A MIR514A3 RNA 0.21 TCGA-51-6867-01 X 147027062 147027062 G T FMR1 Missense_Mutation p.D555Y 0.57 deleterious_low_confidence(0) possibly_damaging(0.523) TCGA-51-6867-01 X 1585464 1585464 C T P2RY8 5'UTR 0.61 TCGA-51-6867-01 X 1743250 1743250 G C ASMT Missense_Mutation p.R111S 0.32 tolerated(0.22) benign(0.096) TCGA-51-6867-01 X 17819684 17819684 A T RAI2 Missense_Mutation p.S149R 0.66 tolerated(0.09) possibly_damaging(0.548) TCGA-51-6867-01 X 19854249 19854249 A T SH3KBP1 Missense_Mutation p.F52L 0.06 deleterious(0.01) benign(0.005) TCGA-51-6867-01 X 21675038 21675038 G T KLHL34 Missense_Mutation p.A290E 0.77 tolerated(0.05) benign(0.025) TCGA-51-6867-01 X 24228480 24228480 A G ZFX Missense_Mutation p.I469V 0.65 tolerated(0.99) benign(0.009) TCGA-51-6867-01 X 26212224 26212224 C A MAGEB6 Missense_Mutation p.N87K 0.68 tolerated(1) benign(0) TCGA-51-6867-01 X 30873678 30873678 T A TAB3 Missense_Mutation p.N35I 0.67 deleterious(0) probably_damaging(0.999) TCGA-51-6867-01 X 30877724 30877724 C A TAB3 5'UTR 0.65 TCGA-51-6867-01 X 31090074 31090074 G T FTHL17 5'UTR 0.59 TCGA-51-6867-01 X 34148669 34148669 C G FAM47A Missense_Mutation p.R576P 0.69 tolerated(0.4) benign(0.445) TCGA-51-6867-01 X 34149643 34149643 A T FAM47A Silent p.P251P 0.60 TCGA-51-6867-01 X 34961678 34961678 G T FAM47B Missense_Mutation p.A244S 0.75 tolerated(0.36) possibly_damaging(0.614) TCGA-51-6867-01 X 37285241 37285241 T C PRRG1 Silent p.N53N 0.67 TCGA-51-6867-01 X 44894194 44894194 G T KDM6A Missense_Mutation p.V195F 0.65 tolerated(0.05) benign(0.197) TCGA-51-6867-01 X 48896664 48896664 G A TFE3 Missense_Mutation p.P168S 0.67 tolerated(0.17) possibly_damaging(0.641) TCGA-51-6867-01 X 73963305 73963305 G C KIAA2022 Missense_Mutation p.Q363E 0.64 deleterious(0.01) benign(0.108) TCGA-51-6867-01 X 77913410 77913410 C A ZCCHC5 Missense_Mutation p.A170S 0.67 deleterious(0) benign(0.05) TCGA-51-6867-01 X 78427074 78427074 G C GPR174 Missense_Mutation p.E190D 0.73 deleterious(0.02) probably_damaging(0.982) TCGA-51-6867-01 X 83128824 83128824 A C CYLC1 Missense_Mutation p.T370P 0.22 deleterious(0) unknown(0) TCGA-51-6867-01 X 91131800 91131800 C A PCDH11X Silent p.L187L 0.63 TCGA-51-6867-01 X 91642878 91642878 C A PCDH11X Missense_Mutation p.R1097S 0.69 deleterious(0.01) benign(0) TCGA-51-6867-01 X 96139565 96139565 G T RPA4 Missense_Mutation p.A86S 0.72 deleterious(0) possibly_damaging(0.877) TCGA-52-7622-01 10 105138230 105138230 C T TAF5 Missense_Mutation p.P346S 0.07 tolerated(0.11) benign(0.258) TCGA-52-7622-01 10 108371671 108371671 C A SORCS1 Nonsense_Mutation p.E1011* 0.29 TCGA-52-7622-01 10 108371672 108371672 C A SORCS1 Silent p.V1010V 0.29 TCGA-52-7622-01 10 117001422 117001422 C T ATRNL1 Missense_Mutation p.A532V 0.06 tolerated(0.09) benign(0.003) TCGA-52-7622-01 10 1230908 1230908 C A ADARB2 Missense_Mutation p.A646S 0.21 tolerated(0.68) benign(0.039) TCGA-52-7622-01 10 123258070 123258070 C T FGFR2 Missense_Mutation p.M538I 0.27 deleterious(0) probably_damaging(0.983) TCGA-52-7622-01 10 15686099 15686099 T A ITGA8 Silent p.S443S 0.23 TCGA-52-7622-01 10 27700842 27700842 G T PTCHD3 Nonsense_Mutation p.S369* 0.26 TCGA-52-7622-01 10 7838085 7838085 A G ATP5C1 Missense_Mutation p.I20V 0.28 tolerated(0.98) benign(0) TCGA-52-7622-01 10 81372141 81372141 T C SFTPA1 Silent p.P97P 0.26 TCGA-52-7622-01 10 85997315 85997315 G T LRIT1 Missense_Mutation p.R84S 0.26 tolerated(0.62) benign(0.03) TCGA-52-7622-01 10 85997316 85997316 G T LRIT1 Silent p.G83G 0.30 TCGA-52-7622-01 10 87482852 87482852 G T GRID1 Silent p.G635G 0.34 TCGA-52-7622-01 10 91222296 91222296 T C SLC16A12 Missense_Mutation p.I14V 0.32 tolerated_low_confidence(0.88) benign(0.005) TCGA-52-7622-01 11 100998893 100998893 G A PGR Silent p.F303F 0.13 TCGA-52-7622-01 11 103866882 103866882 T A PDGFD Nonsense_Mutation p.K141* 0.14 TCGA-52-7622-01 11 114453223 114453223 C G NXPE4 Missense_Mutation p.G206A 0.16 deleterious(0.01) probably_damaging(0.973) TCGA-52-7622-01 11 123524618 123524618 G C SCN3B 5'UTR 0.22 TCGA-52-7622-01 11 123909183 123909183 A G OR10G7 Missense_Mutation p.Y176H 0.15 deleterious(0) probably_damaging(0.988) TCGA-52-7622-01 11 125488327 125488327 A G STT3A Missense_Mutation p.I612V 0.20 tolerated(0.31) possibly_damaging(0.756) TCGA-52-7622-01 11 22291876 22291876 G T ANO5 Missense_Mutation p.W639C 0.16 deleterious(0.03) benign(0.133) TCGA-52-7622-01 11 34153692 34153692 C T NAT10 Missense_Mutation p.T514I 0.17 deleterious(0) benign(0.23) TCGA-52-7622-01 11 34680251 34680251 A G EHF Missense_Mutation p.Y282C 0.22 deleterious(0) probably_damaging(0.999) TCGA-52-7622-01 11 45671217 45671217 C A CHST1 3'UTR 0.24 TCGA-52-7622-01 11 47657116 47657116 T A MTCH2 Missense_Mutation p.Q96L 0.16 tolerated(0.16) benign(0.001) TCGA-52-7622-01 11 48238607 48238607 C A OR4B1 Missense_Mutation p.D82E 0.07 deleterious(0) possibly_damaging(0.895) TCGA-52-7622-01 11 49831765 49831765 G A RP11-707M1.1 RNA 0.13 TCGA-52-7622-01 11 5173079 5173079 G A OR52A1 Missense_Mutation p.T174I 0.15 deleterious(0.01) benign(0.2) TCGA-52-7622-01 11 56510831 56510831 T A OR9G4 Missense_Mutation p.T153S 0.18 tolerated(0.85) benign(0.001) TCGA-52-7622-01 11 5757927 5757927 A T OR56B1 Missense_Mutation p.N61Y 0.15 deleterious(0) benign(0.162) TCGA-52-7622-01 11 59245267 59245267 G T OR4D10 Missense_Mutation p.R122L 0.25 deleterious(0) possibly_damaging(0.749) TCGA-52-7622-01 11 65267660 65267660 A G MALAT1 RNA 0.33 TCGA-52-7622-01 11 6532642 6532642 A C DNHD1 Missense_Mutation p.T459P 0.06 possibly_damaging(0.623) TCGA-52-7622-01 11 66050873 66050873 G C CNIH2 Intron 0.05 TCGA-52-7622-01 11 68748440 68748440 T A MRGPRD Missense_Mutation p.N6Y 0.26 tolerated(0.1) benign(0.049) TCGA-52-7622-01 11 68748441 68748441 C A MRGPRD Missense_Mutation p.L5F 0.26 deleterious(0.02) possibly_damaging(0.624) TCGA-52-7622-01 11 68821544 68821544 C T TPCN2 Silent p.V51V 0.27 TCGA-52-7622-01 11 78176927 78176927 G A NARS2 Missense_Mutation p.H387Y 0.09 deleterious(0) benign(0.393) TCGA-52-7622-01 11 7818344 7818344 G T OR5P2 Missense_Mutation p.S49Y 0.15 deleterious(0) possibly_damaging(0.513) TCGA-52-7622-01 11 94113679 94113679 A T GPR83 Missense_Mutation p.L303H 0.15 deleterious(0) possibly_damaging(0.886) TCGA-52-7622-01 12 103699793 103699793 C A C12orf42 Missense_Mutation p.R197I 0.18 tolerated(0.07) possibly_damaging(0.899) TCGA-52-7622-01 12 105622987 105622987 C A APPL2 Silent p.L23L 0.24 TCGA-52-7622-01 12 11461207 11461207 G T PRB4 Missense_Mutation p.P237H 0.17 deleterious_low_confidence(0) unknown(0) TCGA-52-7622-01 12 117685239 117685239 C G NOS1 Missense_Mutation p.G947R 0.15 deleterious(0.01) benign(0.424) TCGA-52-7622-01 12 118821865 118821865 G A SUDS3 Silent p.L87L 0.13 TCGA-52-7622-01 12 123489953 123489953 C A PITPNM2 Missense_Mutation p.E262D 0.15 tolerated(0.23) benign(0.001) TCGA-52-7622-01 12 130184702 130184702 C A TMEM132D Silent p.T207T 0.19 TCGA-52-7622-01 12 132400995 132400995 C T ULK1 Missense_Mutation p.A644V 0.11 deleterious(0.03) benign(0.046) TCGA-52-7622-01 12 48145614 48145614 T A RAPGEF3 Splice_Site p.X92_splice 0.17 TCGA-52-7622-01 12 56233327 56233327 T A MMP19 Missense_Mutation p.H240L 0.26 tolerated(0.44) benign(0.186) TCGA-52-7622-01 12 56811531 56811531 C A TIMELESS Missense_Mutation p.R1199L 0.17 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-52-7622-01 12 57908748 57908748 C G MARS Missense_Mutation p.A704G 0.12 tolerated(1) benign(0.037) TCGA-52-7622-01 12 70954512 70954512 C A PTPRB Silent p.V1457V 0.21 TCGA-52-7622-01 12 78400350 78400350 C A NAV3 Silent p.T344T 0.16 TCGA-52-7622-01 12 78400994 78400994 G C NAV3 Missense_Mutation p.G559A 0.14 tolerated(0.2) benign(0.373) TCGA-52-7622-01 12 8375140 8375140 C T FAM90A1 Missense_Mutation p.V225M 0.08 tolerated(0.22) benign(0.293) TCGA-52-7622-01 12 85554399 85554399 G T LRRIQ1 Missense_Mutation p.V1577L 0.13 deleterious(0.03) benign(0.037) TCGA-52-7622-01 12 8628803 8628803 G A CLEC6A Nonsense_Mutation p.W151* 0.16 TCGA-52-7622-01 12 8756834 8756834 T C AICDA 3'UTR 0.20 TCGA-52-7622-01 12 9004828 9004828 C A A2ML1 Nonsense_Mutation p.S829* 0.23 TCGA-52-7622-01 12 96131839 96131839 G T NTN4 Missense_Mutation p.N223K 0.07 deleterious(0.02) possibly_damaging(0.651) TCGA-52-7622-01 13 103326818 103326818 G A TPP2 Nonsense_Mutation p.W1173* 0.17 TCGA-52-7622-01 13 111137283 111137283 A G COL4A2 Silent p.P978P 0.32 TCGA-52-7622-01 13 37619398 37619398 C T SUPT20H Missense_Mutation p.G93E 0.17 deleterious(0.05) possibly_damaging(0.819) TCGA-52-7622-01 13 77625296 77625296 A G MYCBP2 Missense_Mutation p.M4548T 0.08 possibly_damaging(0.822) TCGA-52-7622-01 13 97639449 97639449 A C OXGR1 Missense_Mutation p.S189A 0.23 tolerated(0.44) benign(0.032) TCGA-52-7622-01 14 103433398 103433398 G A CDC42BPB Missense_Mutation p.A819V 0.21 deleterious(0.01) possibly_damaging(0.771) TCGA-52-7622-01 14 20215844 20215844 C - OR4Q3 Frame_Shift_Del p.L87Yfs*22 0.10 TCGA-52-7622-01 14 20295678 20295678 A G OR4N2 Missense_Mutation p.Q24R 0.15 deleterious(0.05) benign(0.076) TCGA-52-7622-01 14 21502239 21502239 T A RNASE13 Missense_Mutation p.K70M 0.21 deleterious(0.02) possibly_damaging(0.873) TCGA-52-7622-01 14 24723930 24723930 G T TGM1 Missense_Mutation p.S676R 0.15 deleterious(0) benign(0.262) TCGA-52-7622-01 14 45542509 45542509 G T FAM179B Silent p.T1636T 0.15 TCGA-52-7622-01 14 52179224 52179224 A C FRMD6 Missense_Mutation p.L268F 0.23 deleterious(0) probably_damaging(0.966) TCGA-52-7622-01 14 59939654 59939654 A C L3HYPDH 3'UTR 0.24 TCGA-52-7622-01 14 67579805 67579805 A G GPHN Missense_Mutation p.I515V 0.22 tolerated(0.28) benign(0.214) TCGA-52-7622-01 14 75577030 75577030 C A NEK9 Missense_Mutation p.R328I 0.13 deleterious(0.01) benign(0.045) TCGA-52-7622-01 15 22382981 22382981 G T OR4N4 Missense_Mutation p.G170V 0.09 deleterious(0) probably_damaging(1) TCGA-52-7622-01 15 23812457 23812457 C A MKRN3 3'UTR 0.20 TCGA-52-7622-01 15 25425532 25425532 T A SNORD115-6 5'Flank 0.23 TCGA-52-7622-01 15 25453097 25453097 T C SNORD115-22 5'Flank 0.16 TCGA-52-7622-01 15 41068804 41068804 T G DNAJC17 Missense_Mutation p.Q106P 0.18 tolerated(0.08) benign(0.102) TCGA-52-7622-01 15 41145947 41145947 G T SPINT1 Missense_Mutation p.G261C 0.16 deleterious(0) probably_damaging(0.996) TCGA-52-7622-01 15 42436727 42436727 G A PLA2G4F Silent p.S632S 0.21 TCGA-52-7622-01 15 48722867 48722867 C T FBN1 Splice_Site p.X2291_splice 0.17 TCGA-52-7622-01 15 54305107 54305107 G T UNC13C Missense_Mutation p.A3S 0.14 tolerated_low_confidence(1) benign(0.005) TCGA-52-7622-01 15 74473768 74473768 A G STRA6 Missense_Mutation p.F557L 0.16 tolerated(0.06) benign(0.159) TCGA-52-7622-01 15 89398289 89398289 C A ACAN Missense_Mutation p.P825T 0.35 tolerated(0.09) benign(0.001) TCGA-52-7622-01 16 15841936 15841936 G T MYH11 Silent p.P723P 0.16 TCGA-52-7622-01 16 27786343 27786343 G T KIAA0556 Missense_Mutation p.D1463Y 0.27 deleterious(0) probably_damaging(1) TCGA-52-7622-01 16 30507755 30507755 A T ITGAL Splice_Site p.X568_splice 0.19 TCGA-52-7622-01 16 4384896 4384896 C T GLIS2 Missense_Mutation p.S147F 0.30 deleterious(0) probably_damaging(0.931) TCGA-52-7622-01 16 51172642 51172642 C T SALL1 Missense_Mutation p.C1164Y 0.20 deleterious(0) possibly_damaging(0.756) TCGA-52-7622-01 16 58568286 58568286 C A CNOT1 Missense_Mutation p.G1887V 0.28 deleterious(0) probably_damaging(0.979) TCGA-52-7622-01 16 58568287 58568287 C A CNOT1 Nonsense_Mutation p.G1887* 0.26 TCGA-52-7622-01 16 67662392 67662392 C T CTCF Silent p.H546H 0.25 TCGA-52-7622-01 16 70516062 70516062 T A COG4 Missense_Mutation p.Y646F 0.29 tolerated(0.07) probably_damaging(0.999) TCGA-52-7622-01 16 71570956 71570956 T A CHST4 Missense_Mutation p.W126R 0.24 deleterious(0) probably_damaging(1) TCGA-52-7622-01 16 87678601 87678601 G A JPH3 Missense_Mutation p.A374T 0.29 deleterious(0.01) possibly_damaging(0.563) TCGA-52-7622-01 17 35479518 35479518 C A ACACA Missense_Mutation p.V2025L 0.21 deleterious(0) benign(0.163) TCGA-52-7622-01 17 38854441 38854441 C A KRT24 3'UTR 0.16 TCGA-52-7622-01 17 41738627 41738627 G - MEOX1 Frame_Shift_Del p.N93Tfs*104 0.16 TCGA-52-7622-01 17 43531326 43531326 T A PLEKHM1 Missense_Mutation p.Q631L 0.13 tolerated(0.28) possibly_damaging(0.556) TCGA-52-7622-01 17 46153395 46153395 C G CBX1 Missense_Mutation p.E96Q 0.19 tolerated(0.23) possibly_damaging(0.773) TCGA-52-7622-01 17 47115656 47115656 G A IGF2BP1 Silent p.Q176Q 0.23 TCGA-52-7622-01 17 48918087 48918087 C A WFIKKN2 Missense_Mutation p.R480S 0.19 tolerated(0.4) possibly_damaging(0.672) TCGA-52-7622-01 17 60753169 60753169 C A MRC2 Missense_Mutation p.P530T 0.15 deleterious(0.01) possibly_damaging(0.87) TCGA-52-7622-01 17 60753170 60753170 C A MRC2 Missense_Mutation p.P530Q 0.14 deleterious(0.01) probably_damaging(0.964) TCGA-52-7622-01 17 61566474 61566474 C T ACE Silent p.P874P 0.22 TCGA-52-7622-01 17 72245015 72245015 G T TTYH2 Intron 0.29 TCGA-52-7622-01 17 72738413 72738413 T A RAB37 Missense_Mutation p.D80E 0.12 tolerated(0.07) benign(0.027) TCGA-52-7622-01 17 7578536 7578536 T C TP53 Missense_Mutation p.K132E 0.26 deleterious(0) probably_damaging(1) TCGA-52-7622-01 17 7798386 7798386 G T CHD3 Missense_Mutation p.C533F 0.19 possibly_damaging(0.639) TCGA-52-7622-01 17 7798387 7798387 C G CHD3 Missense_Mutation p.C533W 0.20 possibly_damaging(0.892) TCGA-52-7622-01 17 8222631 8222631 T A ARHGEF15 Missense_Mutation p.S730T 0.03 tolerated(0.07) probably_damaging(0.992) TCGA-52-7622-01 17 9820460 9820460 T A GAS7 3'UTR 0.36 TCGA-52-7622-01 18 13731661 13731661 G C RNMT Missense_Mutation p.V49L 0.24 tolerated_low_confidence(0.15) benign(0.017) TCGA-52-7622-01 18 57134092 57134092 C G CCBE1 Silent p.T144T 0.16 TCGA-52-7622-01 18 61328289 61328289 C T SERPINB3 Silent p.K54K 0.16 TCGA-52-7622-01 18 74592148 74592148 C T ZNF236 Missense_Mutation p.A353V 0.15 tolerated(0.2) benign(0.019) TCGA-52-7622-01 19 10504099 10504099 T C CDC37 Missense_Mutation p.M249V 0.21 tolerated(0.26) benign(0.007) TCGA-52-7622-01 19 17750655 17750655 C A UNC13A Missense_Mutation p.M950I 0.11 tolerated(0.07) benign(0.021) TCGA-52-7622-01 19 23159561 23159561 C G ZNF728 Missense_Mutation p.R193T 0.23 tolerated(0.09) possibly_damaging(0.653) TCGA-52-7622-01 19 35719169 35719169 G C FAM187B Missense_Mutation p.Q139E 0.04 tolerated(1) benign(0) TCGA-52-7622-01 19 36297484 36297484 C T PRODH2 Silent p.R359R 0.15 TCGA-52-7622-01 19 38990635 38990635 A T RYR1 Silent p.G2434G 0.13 TCGA-52-7622-01 19 40362839 40362839 T C FCGBP Silent p.V5077V 0.19 TCGA-52-7622-01 19 48734119 48734119 C A CARD8 Silent p.L229L 0.16 TCGA-52-7622-01 19 51133123 51133123 G T SYT3 Missense_Mutation p.P327H 0.14 deleterious(0) possibly_damaging(0.879) TCGA-52-7622-01 19 51301692 51301692 T A C19orf48 Missense_Mutation p.E5V 0.13 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-52-7622-01 19 52327477 52327477 C A FPR3 Missense_Mutation p.P159Q 0.16 tolerated(0.1) possibly_damaging(0.841) TCGA-52-7622-01 19 53057587 53057587 A G ZNF808 Missense_Mutation p.H473R 0.28 deleterious(0) probably_damaging(0.991) TCGA-52-7622-01 19 53391429 53391429 A C ZNF320 Silent p.T31T 0.07 TCGA-52-7622-01 19 53644614 53644614 C G ZNF347 Missense_Mutation p.E490D 0.13 tolerated(0.09) benign(0.047) TCGA-52-7622-01 19 53959541 53959541 G T ZNF761 RNA 0.14 TCGA-52-7622-01 19 54544206 54544206 G A VSTM1 3'UTR 0.15 TCGA-52-7622-01 19 55014951 55014951 G T LAIR2 Missense_Mutation p.G24W 0.18 tolerated(0.07) benign(0.404) TCGA-52-7622-01 19 57646512 57646512 T C ZIM3 Missense_Mutation p.K398R 0.17 deleterious(0.01) probably_damaging(0.984) TCGA-52-7622-01 19 57956400 57956400 T A ZNF749 Missense_Mutation p.S628R 0.13 tolerated(0.39) benign(0.117) TCGA-52-7622-01 19 8660788 8660788 C A ADAMTS10 Splice_Site p.X446_splice 0.11 TCGA-52-7622-01 1 101203869 101203869 C T VCAM1 3'UTR 0.22 TCGA-52-7622-01 1 120467989 120467989 A G NOTCH2 Missense_Mutation p.C1484R 0.30 deleterious(0) possibly_damaging(0.719) TCGA-52-7622-01 1 143767594 143767594 A G PPIAL4G Silent p.D85D 0.05 TCGA-52-7622-01 1 145474417 145474417 A T ANKRD34A Silent p.R363R 0.32 TCGA-52-7622-01 1 157801695 157801695 A T CD5L 3'UTR 0.08 TCGA-52-7622-01 1 158390561 158390561 C A OR10K2 Silent p.L32L 0.09 TCGA-52-7622-01 1 158612332 158612332 T A SPTA1 Missense_Mutation p.R1536W 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-52-7622-01 1 161928280 161928280 G T ATF6 Missense_Mutation p.D617Y 0.10 deleterious(0) probably_damaging(0.95) TCGA-52-7622-01 1 19634680 19634680 T - AKR7A2 Frame_Shift_Del p.N188Mfs*33 0.20 TCGA-52-7622-01 1 228451997 228451997 G T OBSCN Missense_Mutation p.R1773L 0.31 probably_damaging(0.991) TCGA-52-7622-01 1 230820970 230820970 G T COG2 Silent p.V456V 0.20 TCGA-52-7622-01 1 235301475 235301475 G A RBM34 Missense_Mutation p.P239L 0.17 deleterious(0) probably_damaging(0.939) TCGA-52-7622-01 1 235969542 235969542 G C LYST Missense_Mutation p.S965C 0.22 deleterious_low_confidence(0) possibly_damaging(0.617) TCGA-52-7622-01 1 237897040 237897040 C T RYR2 Missense_Mutation p.A3692V 0.11 possibly_damaging(0.515) TCGA-52-7622-01 1 245809532 245809532 G C KIF26B Silent p.L736L 0.27 TCGA-52-7622-01 1 247978669 247978669 A G OR14A16 Silent p.Y121Y 0.23 TCGA-52-7622-01 1 248084335 248084335 T A OR2T8 Missense_Mutation p.Y6N 0.18 tolerated(0.32) benign(0) TCGA-52-7622-01 1 248112720 248112720 C G OR2L8 Silent p.A187A 0.05 TCGA-52-7622-01 1 248366980 248366980 T C OR2M3 Missense_Mutation p.I204T 0.19 deleterious(0) benign(0.41) TCGA-52-7622-01 1 53684090 53684090 G A C1orf123 Silent p.S75S 0.17 TCGA-52-7622-01 20 18535781 18535781 A G SEC23B Silent p.P726P 0.25 TCGA-52-7622-01 20 1905456 1905456 G C SIRPA Silent p.V378V 0.14 TCGA-52-7622-01 20 1908541 1908541 A G SIRPA Missense_Mutation p.T408A 0.21 tolerated(0.4) possibly_damaging(0.899) TCGA-52-7622-01 20 20269380 20269380 G T C20orf26 Missense_Mutation p.R975I 0.28 deleterious(0.02) probably_damaging(0.966) TCGA-52-7622-01 20 23731276 23731276 C T CST1 Silent p.Q76Q 0.28 TCGA-52-7622-01 20 33054223 33054223 A G ITCH Intron 0.18 TCGA-52-7622-01 20 33567209 33567209 G T MYH7B Missense_Mutation p.W78C 0.12 probably_damaging(0.999) TCGA-52-7622-01 20 36775193 36775193 C T TGM2 Missense_Mutation p.R262Q 0.15 tolerated(0.06) benign(0.159) TCGA-52-7622-01 20 47602006 47602006 A T ARFGEF2 Missense_Mutation p.Y711F 0.07 tolerated(0.16) possibly_damaging(0.486) TCGA-52-7622-01 20 52193323 52193323 T C ZNF217 Silent p.E660E 0.10 TCGA-52-7622-01 20 52193324 52193324 T C ZNF217 Missense_Mutation p.E660G 0.10 tolerated(0.31) benign(0.001) TCGA-52-7622-01 20 52193325 52193325 C T ZNF217 Missense_Mutation p.E660K 0.10 tolerated(0.72) benign(0.034) TCGA-52-7622-01 20 54573754 54573754 A G CBLN4 Silent p.D155D 0.10 TCGA-52-7622-01 20 61288302 61288302 T A SLCO4A1 Missense_Mutation p.S166T 0.21 tolerated(0.62) benign(0.009) TCGA-52-7622-01 20 61288303 61288303 C A SLCO4A1 Nonsense_Mutation p.S166* 0.21 TCGA-52-7622-01 21 16339566 16339566 C A NRIP1 Missense_Mutation p.Q316H 0.24 tolerated(0.13) benign(0.004) TCGA-52-7622-01 21 31709632 31709632 C A KRTAP27-1 Nonsense_Mutation p.E119* 0.25 TCGA-52-7622-01 22 29706681 29706681 G A GAS2L1 Silent p.E265E 0.11 TCGA-52-7622-01 22 32628991 32628991 C G SLC5A4 Missense_Mutation p.D306H 0.27 deleterious(0) possibly_damaging(0.877) TCGA-52-7622-01 22 37524235 37524235 C A IL2RB Missense_Mutation p.Q519H 0.18 tolerated(0.09) benign(0.032) TCGA-52-7622-01 22 40015376 40015376 G T CACNA1I Missense_Mutation p.V182F 0.17 deleterious(0) probably_damaging(0.957) TCGA-52-7622-01 22 41310287 41310287 C T XPNPEP3 Silent p.C338C 0.22 TCGA-52-7622-01 22 46327101 46327101 C A WNT7B Missense_Mutation p.W149C 0.22 deleterious(0) probably_damaging(0.992) TCGA-52-7622-01 2 107053025 107053025 T C RGPD3 Silent p.V493V 0.13 TCGA-52-7622-01 2 130948129 130948129 G T MZT2B Missense_Mutation p.R136L 0.16 deleterious(0) possibly_damaging(0.716) TCGA-52-7622-01 2 158443907 158443907 C G ACVR1C Missense_Mutation p.L32F 0.09 tolerated(0.58) probably_damaging(0.998) TCGA-52-7622-01 2 17696869 17696869 C A RAD51AP2 Silent p.G938G 0.16 TCGA-52-7622-01 2 178098807 178098807 T C NFE2L2 Missense_Mutation p.T80A 0.18 deleterious(0) probably_damaging(0.999) TCGA-52-7622-01 2 179612418 179612418 G T TTN Intron 0.16 TCGA-52-7622-01 2 18736413 18736413 T A RDH14 3'UTR 0.07 TCGA-52-7622-01 2 1926469 1926469 G T MYT1L Missense_Mutation p.R358S 0.29 tolerated_low_confidence(0.24) benign(0.025) TCGA-52-7622-01 2 216811824 216811824 G - MREG Frame_Shift_Del p.L90Sfs*15 0.25 TCGA-52-7622-01 2 220110717 220110717 A T STK16 5'UTR 0.20 TCGA-52-7622-01 2 231404039 231404039 G A SP100 Missense_Mutation p.D718N 0.08 deleterious(0.04) possibly_damaging(0.741) TCGA-52-7622-01 2 231775447 231775447 G C GPR55 Silent p.L77L 0.16 TCGA-52-7622-01 2 241815409 241815409 C T AGXT Silent p.L278L 0.30 TCGA-52-7622-01 2 242135297 242135297 T A ANO7 Intron 0.23 TCGA-52-7622-01 2 33359953 33359953 A G LTBP1 Missense_Mutation p.K376R 0.12 deleterious(0.04) benign(0.049) TCGA-52-7622-01 2 43798941 43798941 T A THADA Missense_Mutation p.M657L 0.18 tolerated(0.46) benign(0) TCGA-52-7622-01 2 43937245 43937245 T C PLEKHH2 Missense_Mutation p.S695P 0.06 tolerated(0.07) benign(0.008) TCGA-52-7622-01 2 79254170 79254170 A G REG3G Missense_Mutation p.Q69R 0.15 deleterious(0.02) possibly_damaging(0.49) TCGA-52-7622-01 2 84668429 84668429 T A SUCLG1 Missense_Mutation p.K158I 0.29 tolerated(0.41) benign(0.014) TCGA-52-7622-01 3 101117703 101117703 A G SENP7 Splice_Site p.X226_splice 0.16 TCGA-52-7622-01 3 111923149 111923149 G A SLC9C1 Silent p.D696D 0.15 TCGA-52-7622-01 3 113380251 113380251 C T KIAA2018 Missense_Mutation p.R93Q 0.16 probably_damaging(0.997) TCGA-52-7622-01 3 114058117 114058117 C A ZBTB20 Missense_Mutation p.R654L 0.17 tolerated(0.08) probably_damaging(0.982) TCGA-52-7622-01 3 119361283 119361283 G A POPDC2 3'UTR 0.25 TCGA-52-7622-01 3 126747069 126747069 C T PLXNA1 Missense_Mutation p.P1519S 0.08 tolerated(0.08) benign(0.081) TCGA-52-7622-01 3 127646646 127646646 C A KBTBD12 Nonsense_Mutation p.C370* 0.15 TCGA-52-7622-01 3 128598617 128598617 G T ACAD9 Missense_Mutation p.R28L 0.17 deleterious(0) possibly_damaging(0.577) TCGA-52-7622-01 3 129290005 129290005 C A PLXND1 Nonsense_Mutation p.E1160* 0.17 TCGA-52-7622-01 3 129389736 129389736 C - TMCC1 Frame_Shift_Del p.Q317Sfs*13 0.19 TCGA-52-7622-01 3 130743388 130743388 G A ASTE1 Nonsense_Mutation p.R255* 0.16 TCGA-52-7622-01 3 138739054 138739054 G T PRR23B Silent p.A150A 0.16 TCGA-52-7622-01 3 142511685 142511685 G A TRPC1 Missense_Mutation p.R486Q 0.18 deleterious(0) possibly_damaging(0.884) TCGA-52-7622-01 3 152150554 152150554 G A MBNL1 Missense_Mutation p.A132T 0.19 tolerated(0.23) probably_damaging(0.998) TCGA-52-7622-01 3 167240173 167240173 C A WDR49 Nonsense_Mutation p.E550* 0.12 TCGA-52-7622-01 3 170198842 170198842 A G SLC7A14 Missense_Mutation p.M410T 0.16 deleterious(0) probably_damaging(1) TCGA-52-7622-01 3 190030721 190030721 C T CLDN1 Missense_Mutation p.D110N 0.07 tolerated(0.29) probably_damaging(0.909) TCGA-52-7622-01 3 195453368 195453368 G A MUC20 Missense_Mutation p.A632T 0.15 deleterious(0.02) unknown(0) TCGA-52-7622-01 3 40353539 40353539 A G EIF1B 3'UTR 0.17 TCGA-52-7622-01 3 41280713 41280713 C T CTNNB1 Silent p.H742H 0.20 TCGA-52-7622-01 3 41607574 41607574 T C ULK4 Silent p.A1056A 0.10 TCGA-52-7622-01 3 45764408 45764408 G A SACM1L Silent p.K271K 0.12 TCGA-52-7622-01 3 47461102 47461102 T C SCAP Silent p.P552P 0.35 TCGA-52-7622-01 4 106552297 106552297 T A ARHGEF38 Intron 0.13 TCGA-52-7622-01 4 120192606 120192606 A G USP53 Missense_Mutation p.I531V 0.18 tolerated(1) benign(0) TCGA-52-7622-01 4 134072364 134072364 G A PCDH10 Missense_Mutation p.E357K 0.11 deleterious(0.05) benign(0.345) TCGA-52-7622-01 4 160268094 160268094 C T RAPGEF2 Missense_Mutation p.A1058V 0.17 deleterious(0.03) benign(0.008) TCGA-52-7622-01 4 175897758 175897759 - A ADAM29 Frame_Shift_Ins p.P362Tfs*4 0.18 TCGA-52-7622-01 4 1805489 1805489 C A FGFR3 Intron 0.16 TCGA-52-7622-01 4 186188199 186188199 A T SNX25 Missense_Mutation p.R163S 0.09 deleterious(0) probably_damaging(0.99) TCGA-52-7622-01 4 25128941 25128941 C A SEPSECS Missense_Mutation p.L355F 0.11 tolerated(0.28) probably_damaging(0.99) TCGA-52-7622-01 4 37848880 37848880 G T PGM2 Missense_Mutation p.G416W 0.23 deleterious(0) probably_damaging(0.995) TCGA-52-7622-01 4 68784809 68784809 G T TMPRSS11A Silent p.V281V 0.25 TCGA-52-7622-01 4 96256684 96256684 T A UNC5C Nonsense_Mutation p.K75* 0.21 TCGA-52-7622-01 5 13811923 13811923 T A DNAH5 Nonsense_Mutation p.K2414* 0.12 TCGA-52-7622-01 5 149602662 149602662 G T CAMK2A Silent p.G452G 0.27 TCGA-52-7622-01 5 156479625 156479625 G T HAVCR1 Silent p.T140T 0.19 TCGA-52-7622-01 5 169126420 169126420 C G DOCK2 Missense_Mutation p.L364V 0.19 tolerated(0.17) benign(0.041) TCGA-52-7622-01 5 21854818 21854818 A C CDH12 Missense_Mutation p.L203R 0.18 deleterious(0.01) possibly_damaging(0.685) TCGA-52-7622-01 5 21975201 21975201 C A CDH12 Silent p.V175V 0.10 TCGA-52-7622-01 5 33881281 33881281 C G ADAMTS12 Silent p.T144T 0.18 TCGA-52-7622-01 5 33937466 33937466 G A RXFP3 Silent p.G207G 0.22 TCGA-52-7622-01 5 35876656 35876656 C A IL7R 3'UTR 0.37 TCGA-52-7622-01 5 41033156 41033156 A G MROH2B Missense_Mutation p.I783T 0.19 tolerated(0.18) benign(0.237) TCGA-52-7622-01 5 5190120 5190120 T A ADAMTS16 Missense_Mutation p.L362I 0.13 deleterious(0) probably_damaging(1) TCGA-52-7622-01 5 75591741 75591741 T A SV2C Missense_Mutation p.H492Q 0.10 deleterious(0.01) benign(0.229) TCGA-52-7622-01 5 79616994 79616994 G A SPZ1 Missense_Mutation p.M320I 0.24 tolerated(1) benign(0.001) TCGA-52-7622-01 5 87494823 87494823 C G TMEM161B Silent p.G353G 0.12 TCGA-52-7622-01 6 101037610 101037610 C A ASCC3 Missense_Mutation p.R1817L 0.20 deleterious(0.03) possibly_damaging(0.498) TCGA-52-7622-01 6 107956566 107956566 A G SOBP Missense_Mutation p.M840V 0.16 deleterious(0.01) benign(0.002) TCGA-52-7622-01 6 132874152 132874152 C T TAAR8 Silent p.H107H 0.15 TCGA-52-7622-01 6 153019176 153019176 G C MYCT1 Missense_Mutation p.D47H 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.875) TCGA-52-7622-01 6 155450637 155450637 C A TIAM2 Missense_Mutation p.H94N 0.16 tolerated_low_confidence(0.07) benign(0.097) TCGA-52-7622-01 6 159677632 159677632 T A FNDC1 Missense_Mutation p.L1715M 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-52-7622-01 6 31743783 31743783 G T VWA7 Silent p.T157T 0.15 TCGA-52-7622-01 6 31868564 31868564 G A ZBTB12 Silent p.P173P 0.44 TCGA-52-7622-01 6 32046826 32046826 G - RNA5SP206 5'Flank 0.22 TCGA-52-7622-01 6 38775408 38775408 T C DNAH8 Missense_Mutation p.F841S 0.23 benign(0.002) TCGA-52-7622-01 6 38875800 38875800 G A DNAH8 Silent p.R2922R 0.11 TCGA-52-7622-01 6 43323607 43323607 G A ZNF318 Nonsense_Mutation p.R489* 0.21 TCGA-52-7622-01 6 49665580 49665580 A T CRISP2 Missense_Mutation p.C170S 0.08 deleterious(0.01) probably_damaging(0.995) TCGA-52-7622-01 6 66204969 66204969 A G EYS Missense_Mutation p.V112A 0.16 deleterious_low_confidence(0.02) benign(0.007) TCGA-52-7622-01 6 74351605 74351605 G T SLC17A5 Missense_Mutation p.L112I 0.06 deleterious(0) probably_damaging(0.999) TCGA-52-7622-01 6 90382270 90382270 A G MDN1 Silent p.D4542D 0.26 TCGA-52-7622-01 6 96974249 96974249 G T UFL1 Missense_Mutation p.G135C 0.19 deleterious(0) probably_damaging(1) TCGA-52-7622-01 7 100187510 100187510 C A FBXO24 Intron 0.18 TCGA-52-7622-01 7 100682427 100682427 G C MUC17 Missense_Mutation p.R2577T 0.19 benign(0) TCGA-52-7622-01 7 100684219 100684219 G C MUC17 Missense_Mutation p.M3174I 0.22 benign(0.001) TCGA-52-7622-01 7 103270444 103270444 G T RELN Missense_Mutation p.S882Y 0.25 deleterious(0.03) probably_damaging(0.996) TCGA-52-7622-01 7 135269629 135269629 T A NUP205 Silent p.I364I 0.25 TCGA-52-7622-01 7 137282614 137282614 C T DGKI Silent p.L430L 0.10 TCGA-52-7622-01 7 142625313 142625313 A C TRPV5 Missense_Mutation p.M260R 0.07 deleterious(0) possibly_damaging(0.584) TCGA-52-7622-01 7 142962226 142962226 A G GSTK1 Missense_Mutation p.D142G 0.27 tolerated(0.06) possibly_damaging(0.728) TCGA-52-7622-01 7 142983599 142983599 C T TMEM139 Nonsense_Mutation p.Q110* 0.04 TCGA-52-7622-01 7 143036698 143036698 G T CLCN1 Silent p.G522G 0.19 TCGA-52-7622-01 7 143141198 143141198 C T TAS2R60 Missense_Mutation p.T218I 0.13 tolerated(0.48) benign(0.038) TCGA-52-7622-01 7 150269945 150269945 A T GIMAP4 Missense_Mutation p.I263F 0.19 deleterious(0.04) benign(0.081) TCGA-52-7622-01 7 154862880 154862880 G T HTR5A-AS1 Missense_Mutation p.A45E 0.19 deleterious_low_confidence(0) possibly_damaging(0.858) TCGA-52-7622-01 7 23793960 23793960 G T STK31 Missense_Mutation p.G387V 0.25 tolerated(0.1) probably_damaging(0.996) TCGA-52-7622-01 7 38393743 38393743 A G TRGV4 Silent p.P14P 0.24 TCGA-52-7622-01 7 38398292 38398292 C T TRGV3 Missense_Mutation p.G59R 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-52-7622-01 7 41729889 41729889 G T INHBA Silent p.R214R 0.11 TCGA-52-7622-01 7 77268017 77268017 A T PTPN12 Silent p.I750I 0.16 TCGA-52-7622-01 7 92404140 92404140 A T CDK6 Missense_Mutation p.F80Y 0.09 tolerated(0.14) probably_damaging(0.976) TCGA-52-7622-01 7 97814374 97814374 T A LMTK2 Missense_Mutation p.L268Q 0.24 deleterious(0) probably_damaging(1) TCGA-52-7622-01 7 98257843 98257843 G T NPTX2 Missense_Mutation p.G400C 0.21 deleterious(0) probably_damaging(1) TCGA-52-7622-01 7 99315225 99315225 G A CYP3A7 Missense_Mutation p.S119F 0.06 tolerated(0.14) benign(0.078) TCGA-52-7622-01 8 101245676 101245676 G A SPAG1 Missense_Mutation p.A676T 0.16 deleterious(0) probably_damaging(1) TCGA-52-7622-01 8 122641507 122641507 C A HAS2 Missense_Mutation p.G25V 0.14 tolerated(0.19) possibly_damaging(0.78) TCGA-52-7622-01 8 124359450 124359450 C - ATAD2 Frame_Shift_Del p.Q699Rfs*7 0.16 TCGA-52-7622-01 8 144332527 144332527 G T ZFP41 Nonsense_Mutation p.E172* 0.24 TCGA-52-7622-01 8 145661090 145661090 G T TONSL Missense_Mutation p.P909H 0.33 deleterious(0.01) possibly_damaging(0.479) TCGA-52-7622-01 8 16032806 16032806 G T MSR1 Missense_Mutation p.P36H 0.33 deleterious(0.01) possibly_damaging(0.873) TCGA-52-7622-01 8 16032807 16032807 G T MSR1 Missense_Mutation p.P36T 0.29 tolerated(0.17) benign(0.066) TCGA-52-7622-01 8 41513199 41513199 C T ANK1 3'UTR 0.31 TCGA-52-7622-01 8 42174399 42174399 A T IKBKB Missense_Mutation p.T368S 0.24 tolerated(1) benign(0.003) TCGA-52-7622-01 8 75925158 75925158 G T CRISPLD1 Missense_Mutation p.W137C 0.12 deleterious(0) probably_damaging(0.987) TCGA-52-7622-01 8 8235589 8235589 C A SGK223 Splice_Site p.X111_splice 0.24 TCGA-52-7622-01 8 88249152 88249152 G T CNBD1 Missense_Mutation p.A195S 0.12 deleterious(0.01) benign(0.106) TCGA-52-7622-01 8 88885467 88885467 A T DCAF4L2 Missense_Mutation p.S245T 0.13 deleterious(0.03) possibly_damaging(0.821) TCGA-52-7622-01 8 95182642 95182642 T A CDH17 Missense_Mutation p.Q350L 0.21 deleterious(0) possibly_damaging(0.521) TCGA-52-7622-01 9 119461127 119461127 G T TRIM32 Missense_Mutation p.G369V 0.18 deleterious(0) probably_damaging(0.999) TCGA-52-7622-01 9 125329958 125329958 A G OR1L8 Missense_Mutation p.Y267H 0.11 tolerated(0.56) probably_damaging(0.981) TCGA-52-7622-01 9 125652786 125652786 T A RC3H2 Missense_Mutation p.M130L 0.14 deleterious(0.04) benign(0.354) TCGA-52-7622-01 9 35720188 35720188 G A TLN1 Missense_Mutation p.R438W 0.04 deleterious(0) possibly_damaging(0.549) TCGA-52-7622-01 9 78682952 78682952 G C PCSK5 Missense_Mutation p.K238N 0.12 deleterious(0) possibly_damaging(0.903) TCGA-52-7622-01 X 100911109 100911109 C A ARMCX2 Missense_Mutation p.G489V 0.31 deleterious(0) probably_damaging(1) TCGA-52-7622-01 X 101910830 101910830 A T GPRASP1 Missense_Mutation p.R663S 0.24 deleterious(0) benign(0.006) TCGA-52-7622-01 X 112058707 112058707 G A AMOT Missense_Mutation p.P424L 0.12 unknown(0) TCGA-52-7622-01 X 123197724 123197724 C G STAG2 Missense_Mutation p.I616M 0.12 tolerated(0.3) benign(0.122) TCGA-52-7622-01 X 127185232 127185232 C G ACTRT1 Silent p.V318V 0.17 TCGA-52-7622-01 X 12734445 12734445 A G FRMPD4 Missense_Mutation p.R623G 0.06 deleterious_low_confidence(0.01) benign(0.06) TCGA-52-7622-01 X 129060054 129060054 G C UTP14A Missense_Mutation p.V637L 0.17 tolerated(0.15) benign(0.005) TCGA-52-7622-01 X 12906203 12906203 C G TLR7 Missense_Mutation p.A859G 0.16 tolerated(0.08) benign(0.15) TCGA-52-7622-01 X 129506943 129506943 G T SLC25A14 3'UTR 0.19 TCGA-52-7622-01 X 129822974 129822974 C A ENOX2 Missense_Mutation p.G68V 0.20 deleterious(0.01) probably_damaging(1) TCGA-52-7622-01 X 132161981 132161981 C A USP26 Missense_Mutation p.D90Y 0.11 deleterious(0) probably_damaging(0.931) TCGA-52-7622-01 X 132887756 132887756 C T GPC3 Missense_Mutation p.C262Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-52-7622-01 X 135593464 135593464 A C HTATSF1 Missense_Mutation p.E520D 0.21 tolerated_low_confidence(0.15) benign(0.006) TCGA-52-7622-01 X 138679649 138679649 A C MCF2 Silent p.S751S 0.21 TCGA-52-7622-01 X 141291756 141291756 G A MAGEC2 Silent p.G6G 0.18 TCGA-52-7622-01 X 142718785 142718785 G T SLITRK4 Nonsense_Mutation p.S47* 0.20 TCGA-52-7622-01 X 14592613 14592613 G T GLRA2 Intron 0.15 TCGA-52-7622-01 X 147063185 147063185 A T FMR1NB Missense_Mutation p.Y88F 0.12 tolerated(0.7) benign(0.294) TCGA-52-7622-01 X 152158925 152158925 A G PNMA5 Silent p.H406H 0.27 TCGA-52-7622-01 X 153421859 153421859 G A OPN1LW Missense_Mutation p.V279I 0.24 tolerated(0.31) benign(0.037) TCGA-52-7622-01 X 15833946 15833946 A T ZRSR2 Missense_Mutation p.Q235L 0.14 deleterious(0.01) possibly_damaging(0.621) TCGA-52-7622-01 X 21624935 21624935 C A CNKSR2 Missense_Mutation p.P695T 0.26 tolerated(0.74) benign(0.023) TCGA-52-7622-01 X 21624936 21624936 C A CNKSR2 Missense_Mutation p.P695Q 0.25 deleterious(0.04) possibly_damaging(0.737) TCGA-52-7622-01 X 24844664 24844664 C A POLA1 Silent p.R1222R 0.17 TCGA-52-7622-01 X 26157851 26157851 A C MAGEB18 Missense_Mutation p.Q250P 0.17 deleterious(0) probably_damaging(0.917) TCGA-52-7622-01 X 27839801 27839801 C T MAGEB10 Silent p.Y126Y 0.20 TCGA-52-7622-01 X 30873308 30873308 T C TAB3 Silent p.Q158Q 0.16 TCGA-52-7622-01 X 3228677 3228677 C T MXRA5 Missense_Mutation p.E2523K 0.62 deleterious(0.01) probably_damaging(0.974) TCGA-52-7622-01 X 37029316 37029316 C T FAM47C Missense_Mutation p.P945S 0.08 deleterious(0) probably_damaging(0.921) TCGA-52-7622-01 X 38129069 38129069 C T TM4SF2 Intron 0.10 TCGA-52-7622-01 X 40541973 40541973 A T MED14 Nonsense_Mutation p.Y749* 0.09 TCGA-52-7622-01 X 43599940 43599940 C T MAOA Silent p.I373I 0.11 TCGA-52-7622-01 X 46359863 46359863 A G ZNF674 Silent p.C387C 0.20 TCGA-52-7622-01 X 53439855 53439855 C G SMC1A Missense_Mutation p.E283D 0.15 tolerated(0.23) benign(0.005) TCGA-52-7622-01 X 53576394 53576394 A G HUWE1 Silent p.S3187S 0.15 TCGA-52-7622-01 X 63406040 63406040 G T AMER1 3'UTR 0.17 TCGA-52-7622-01 X 68060234 68060234 G T EFNB1 Missense_Mutation p.V260F 0.11 deleterious(0.02) benign(0.299) TCGA-52-7622-01 X 70612805 70612805 C A TAF1 Silent p.A1024A 0.16 TCGA-52-7622-01 X 78427331 78427331 T C GPR174 Missense_Mutation p.V276A 0.22 deleterious(0) benign(0.053) TCGA-52-7809-01 10 100017749 100017749 C T LOXL4 Missense_Mutation p.R365Q 0.07 tolerated(0.35) benign(0.023) TCGA-52-7809-01 10 105920866 105920866 C T WDR96 Missense_Mutation p.E1157K 0.20 deleterious(0) probably_damaging(0.995) TCGA-52-7809-01 10 124361460 124361460 G T DMBT1 Missense_Mutation p.G1164V 0.48 deleterious(0) probably_damaging(1) TCGA-52-7809-01 10 75114559 75114559 C A TTC18 5'UTR 0.52 TCGA-52-7809-01 11 117109359 117109359 G A RNF214 Silent p.L50L 0.55 TCGA-52-7809-01 11 14853315 14853315 C T PDE3B Missense_Mutation p.L696F 0.15 deleterious(0) probably_damaging(0.999) TCGA-52-7809-01 11 14853317 14853317 C T PDE3B Silent p.L696L 0.15 TCGA-52-7809-01 11 1629276 1629276 G T KRTAP5-3 Missense_Mutation p.R114S 0.60 tolerated(0.79) unknown(0) TCGA-52-7809-01 11 18750528 18750528 C T PTPN5 Missense_Mutation p.V551I 0.06 deleterious(0.02) benign(0.219) TCGA-52-7809-01 11 47362756 47362756 G A MYBPC3 Silent p.D610D 0.19 TCGA-52-7809-01 11 49830106 49830106 C A RP11-707M1.1 RNA 0.27 TCGA-52-7809-01 11 51515944 51515944 C A OR4C46 Nonsense_Mutation p.C221* 0.16 TCGA-52-7809-01 11 5173255 5173255 G T OR52A1 Silent p.G115G 0.59 TCGA-52-7809-01 11 5510156 5510156 C A OR52D1 Missense_Mutation p.L74M 0.48 deleterious(0) probably_damaging(0.999) TCGA-52-7809-01 11 57798599 57798599 A G OR6Q1 Missense_Mutation p.R59G 0.21 deleterious(0.03) benign(0.073) TCGA-52-7809-01 11 58170192 58170192 C G OR5B3 Missense_Mutation p.V231L 0.12 deleterious_low_confidence(0) benign(0.021) TCGA-52-7809-01 11 59406665 59406665 T A PATL1 Missense_Mutation p.E716V 0.29 deleterious(0) possibly_damaging(0.708) TCGA-52-7809-01 11 59415338 59415338 C G PATL1 Missense_Mutation p.K594N 0.13 deleterious(0) probably_damaging(0.999) TCGA-52-7809-01 11 60696236 60696236 G C TMEM132A Missense_Mutation p.E224Q 0.17 tolerated(0.45) benign(0.249) TCGA-52-7809-01 11 61250191 61250191 G A PPP1R32 Missense_Mutation p.D98N 0.17 tolerated(0.07) probably_damaging(1) TCGA-52-7809-01 11 65266460 65266460 T C MALAT1 RNA 0.33 TCGA-52-7809-01 11 71192971 71192971 A C NADSYN1 Silent p.A350A 0.24 TCGA-52-7809-01 11 71711437 71711437 C T IL18BP Silent p.V23V 0.26 TCGA-52-7809-01 11 75152235 75152235 G A GDPD5 Silent p.S482S 0.25 TCGA-52-7809-01 11 88780745 88780745 C G GRM5 Missense_Mutation p.C99S 0.33 deleterious(0) probably_damaging(0.999) TCGA-52-7809-01 11 92533836 92533836 A T FAT3 Missense_Mutation p.I2553F 0.53 benign(0.063) TCGA-52-7809-01 11 92543128 92543128 G T FAT3 Missense_Mutation p.D3123Y 0.22 probably_damaging(0.999) TCGA-52-7809-01 11 94918535 94918535 C G SESN3 Missense_Mutation p.R216T 0.07 tolerated(0.58) benign(0.026) TCGA-52-7809-01 12 100603920 100603920 G C ACTR6 Missense_Mutation p.S150T 0.34 tolerated(0.24) benign(0.019) TCGA-52-7809-01 12 10215655 10215655 C T CLEC9A Silent p.A107A 0.11 TCGA-52-7809-01 12 113346577 113346577 C G OAS1 Silent p.L139L 0.20 TCGA-52-7809-01 12 126135380 126135380 T C TMEM132B Missense_Mutation p.W594R 0.15 deleterious(0) probably_damaging(0.991) TCGA-52-7809-01 12 31132587 31132587 G A TSPAN11 Silent p.V146V 0.31 TCGA-52-7809-01 12 40076888 40076888 G T C12orf40 Missense_Mutation p.D388Y 0.38 tolerated(0.12) benign(0.037) TCGA-52-7809-01 12 49434618 49434618 G C KMT2D Nonsense_Mutation p.S2312* 0.25 TCGA-52-7809-01 12 54106967 54106967 G A CALCOCO1 Silent p.V605V 0.21 TCGA-52-7809-01 12 54687073 54687073 T C NFE2 Silent p.S69S 0.06 TCGA-52-7809-01 12 56823942 56823942 A G TIMELESS Missense_Mutation p.F345L 0.38 deleterious(0) probably_damaging(0.956) TCGA-52-7809-01 12 64377656 64377656 A G SRGAP1 Intron 0.54 TCGA-52-7809-01 12 6749569 6749569 G T ACRBP Silent p.S399S 0.41 TCGA-52-7809-01 12 675277 675277 G A NINJ2 Missense_Mutation p.A80V 0.11 deleterious(0.01) probably_damaging(0.993) TCGA-52-7809-01 12 72057029 72057029 G A ZFC3H1 Missense_Mutation p.S121L 0.42 tolerated(0.24) benign(0.32) TCGA-52-7809-01 12 89890971 89890971 G A POC1B Silent p.T83T 0.14 TCGA-52-7809-01 12 98849638 98849638 C A SLC9A7P1 RNA 0.23 TCGA-52-7809-01 12 991193 991193 G T WNK1 Missense_Mutation p.R1109L 0.22 deleterious(0) probably_damaging(0.997) TCGA-52-7809-01 12 991194 991194 C G WNK1 Silent p.R1109R 0.22 TCGA-52-7809-01 13 110434426 110434426 G A IRS2 Silent p.F1325F 0.11 TCGA-52-7809-01 13 20356840 20356840 G A PSPC1 Missense_Mutation p.R20C 0.58 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-52-7809-01 13 21987895 21987895 G A ZDHHC20 Missense_Mutation p.S89F 0.46 deleterious(0) benign(0.336) TCGA-52-7809-01 13 25483948 25483948 T A CENPJ Missense_Mutation p.E282V 0.19 tolerated(0.11) benign(0.263) TCGA-52-7809-01 13 31495911 31495911 C G MEDAG Missense_Mutation p.L239V 0.26 deleterious(0) probably_damaging(0.978) TCGA-52-7809-01 14 22251223 22251223 G A TRAV7 Missense_Mutation p.R5Q 0.48 tolerated(0.12) benign(0.011) TCGA-52-7809-01 14 23523880 23523880 C T CDH24 Missense_Mutation p.V207M 0.17 deleterious(0.02) probably_damaging(1) TCGA-52-7809-01 14 23842349 23842349 G T IL25 Missense_Mutation p.G8C 0.47 tolerated_low_confidence(0.27) benign(0.001) TCGA-52-7809-01 14 23900154 23900154 T A MYH7 Missense_Mutation p.H284L 0.53 deleterious(0) probably_damaging(0.999) TCGA-52-7809-01 14 31358979 31358979 C G COCH Missense_Mutation p.F545L 0.53 deleterious(0) benign(0.248) TCGA-52-7809-01 14 34398400 34398400 G A EGLN3 Missense_Mutation p.R166W 0.56 deleterious(0.02) probably_damaging(0.958) TCGA-52-7809-01 14 45564688 45564688 A G PRPF39 Silent p.E82E 0.38 TCGA-52-7809-01 14 93412810 93412810 C T ITPK1 Missense_Mutation p.R256Q 0.56 tolerated(0.32) benign(0.002) TCGA-52-7809-01 14 95571436 95571436 C T DICER1 Missense_Mutation p.G1081R 0.65 deleterious(0) probably_damaging(0.996) TCGA-52-7809-01 15 23931683 23931683 A C NDN Missense_Mutation p.F228V 0.12 deleterious(0) probably_damaging(0.912) TCGA-52-7809-01 15 49054703 49054703 T C CEP152 Missense_Mutation p.Q816R 0.19 deleterious(0.01) possibly_damaging(0.447) TCGA-52-7809-01 15 51397415 51397415 C T TNFAIP8L3 5'UTR 0.38 TCGA-52-7809-01 15 62256907 62256907 G C VPS13C Missense_Mutation p.L1069V 0.12 tolerated(0.32) benign(0.002) TCGA-52-7809-01 15 65897521 65897521 T A VWA9 Missense_Mutation p.L35F 0.38 deleterious(0.02) probably_damaging(0.988) TCGA-52-7809-01 15 69327817 69327817 G A NOX5 Missense_Mutation p.V327M 0.11 deleterious(0) benign(0.154) TCGA-52-7809-01 15 72502197 72502197 C T PKM Missense_Mutation p.G128S 0.22 tolerated(0.13) benign(0.025) TCGA-52-7809-01 15 73994805 73994805 C A CD276 Missense_Mutation p.P97T 0.08 tolerated(0.1) benign(0.063) TCGA-52-7809-01 15 81614749 81614749 G A STARD5 Silent p.D94D 0.17 TCGA-52-7809-01 16 19468193 19468193 T G TMC5 Intron 0.62 TCGA-52-7809-01 16 21080788 21080788 C G DNAH3 Missense_Mutation p.G1110A 0.23 tolerated(0.09) possibly_damaging(0.812) TCGA-52-7809-01 16 23116773 23116773 G A USP31 Missense_Mutation p.P360S 0.42 tolerated(0.22) probably_damaging(1) TCGA-52-7809-01 16 2334900 2334900 G - ABCA3 Frame_Shift_Del p.L1195Sfs*4 0.32 TCGA-52-7809-01 16 3065698 3065698 C T CLDN6 Missense_Mutation p.E109K 0.33 tolerated(0.07) possibly_damaging(0.633) TCGA-52-7809-01 16 31096483 31096483 C T PRSS53 Missense_Mutation p.G328R 0.27 deleterious(0) probably_damaging(1) TCGA-52-7809-01 16 4751513 4751513 G C ANKS3 Silent p.P347P 0.24 TCGA-52-7809-01 16 57560000 57560000 C G CCDC102A Missense_Mutation p.E209Q 0.50 tolerated(0.13) possibly_damaging(0.735) TCGA-52-7809-01 16 67963969 67963969 C T CTRL Silent p.Q221Q 0.41 TCGA-52-7809-01 16 72984752 72984752 G C ZFHX3 Silent p.L944L 0.37 TCGA-52-7809-01 17 10419293 10419293 G T MYH1 Missense_Mutation p.P152Q 0.57 deleterious(0) probably_damaging(0.995) TCGA-52-7809-01 17 10427955 10427955 C T MYH2 Missense_Mutation p.R1668Q 0.49 tolerated(0.09) benign(0.12) TCGA-52-7809-01 17 17943081 17943081 G A GID4 Silent p.A101A 0.53 TCGA-52-7809-01 17 27233424 27233424 G A PHF12 Missense_Mutation p.S931L 0.61 deleterious(0) probably_damaging(0.994) TCGA-52-7809-01 17 36104882 36104882 A T HNF1B 5'UTR 0.28 TCGA-52-7809-01 17 41001331 41001331 C G AOC2 Missense_Mutation p.P606R 0.50 deleterious(0.03) benign(0.063) TCGA-52-7809-01 17 4797842 4797842 A T MINK1 Missense_Mutation p.K944M 0.69 deleterious(0.01) probably_damaging(0.996) TCGA-52-7809-01 17 48183273 48183273 C T PDK2 Silent p.I119I 0.30 TCGA-52-7809-01 17 48823148 48823148 G C LUC7L3 Missense_Mutation p.R254T 0.53 tolerated(0.21) unknown(0) TCGA-52-7809-01 17 60348388 60348388 C T TBC1D3P2 Splice_Site 0.45 TCGA-52-7809-01 17 7578461 7578461 C A TP53 Missense_Mutation p.V157F 0.44 deleterious(0) probably_damaging(0.997) TCGA-52-7809-01 18 14852218 14852218 A G ANKRD30B Silent p.L1306L 0.31 TCGA-52-7809-01 18 321662 321662 C G COLEC12 Missense_Mutation p.V737L 0.40 tolerated_low_confidence(0.19) unknown(0) TCGA-52-7809-01 18 34408748 34408748 C T TPGS2 5'UTR 0.24 TCGA-52-7809-01 18 3452377 3452377 A T TGIF1 Nonsense_Mutation p.K134* 0.35 TCGA-52-7809-01 18 3456405 3456405 C A TGIF1 Missense_Mutation p.P153T 0.09 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-52-7809-01 18 47792789 47792789 C T CCDC11 5'UTR 0.16 TCGA-52-7809-01 18 47799931 47799931 C G MBD1 Intron 0.18 TCGA-52-7809-01 18 48326436 48326436 A G MRO Silent p.D235D 0.22 TCGA-52-7809-01 18 53070695 53070695 C A TCF4 Missense_Mutation p.G222V 0.17 deleterious(0.03) benign(0.097) TCGA-52-7809-01 18 58038595 58038595 T C MC4R Missense_Mutation p.S330G 0.18 tolerated_low_confidence(0.61) benign(0) TCGA-52-7809-01 18 59483710 59483710 C A RNF152 5'UTR 0.34 TCGA-52-7809-01 18 61390487 61390487 G A SERPINB11 Missense_Mutation p.E345K 0.08 deleterious(0.02) probably_damaging(0.979) TCGA-52-7809-01 18 66348303 66348303 T G TMX3 Missense_Mutation p.Q317P 0.14 tolerated(0.07) probably_damaging(0.93) TCGA-52-7809-01 19 1110868 1110868 G A SBNO2 Silent p.F968F 0.16 TCGA-52-7809-01 19 15587243 15587243 C G PGLYRP2 Missense_Mutation p.E80Q 0.14 tolerated(0.09) benign(0.03) TCGA-52-7809-01 19 15839263 15839263 G A OR10H2 Missense_Mutation p.S137N 0.21 tolerated(0.47) benign(0.02) TCGA-52-7809-01 19 17885235 17885235 C G FCHO1 Missense_Mutation p.R290G 0.37 deleterious(0.04) possibly_damaging(0.88) TCGA-52-7809-01 19 2878078 2878078 G T ZNF556 Silent p.T374T 0.49 TCGA-52-7809-01 19 32923652 32923652 G C DPY19L3 Missense_Mutation p.E90Q 0.08 deleterious(0.03) probably_damaging(0.989) TCGA-52-7809-01 19 34001958 34001958 G T PEPD Missense_Mutation p.A102D 0.53 tolerated(0.52) benign(0.001) TCGA-52-7809-01 19 3533364 3533364 C G FZR1 Missense_Mutation p.L439V 0.43 deleterious(0) probably_damaging(0.981) TCGA-52-7809-01 19 36214819 36214819 A G KMT2B Missense_Mutation p.Q1082R 0.61 possibly_damaging(0.775) TCGA-52-7809-01 19 36884101 36884101 G A ZFP82 Missense_Mutation p.L381F 0.04 deleterious(0.04) probably_damaging(1) TCGA-52-7809-01 19 38858384 38858384 C T CATSPERG Silent p.D966D 0.07 TCGA-52-7809-01 19 40366121 40366121 G A FCGBP Missense_Mutation p.P4705S 0.11 possibly_damaging(0.687) TCGA-52-7809-01 19 50210809 50210809 T C CPT1C Missense_Mutation p.S460P 0.38 tolerated(0.07) probably_damaging(0.999) TCGA-52-7809-01 19 50796888 50796888 G A MYH14 Missense_Mutation p.E1805K 0.43 deleterious(0) probably_damaging(0.971) TCGA-52-7809-01 19 53855437 53855437 T A ZNF845 Silent p.A503A 0.29 TCGA-52-7809-01 19 54818759 54818759 C G LILRA5 Missense_Mutation p.G280A 0.49 deleterious(0.02) benign(0.055) TCGA-52-7809-01 19 54871649 54871649 G A LAIR1 Missense_Mutation p.T132I 0.33 tolerated(0.15) benign(0.086) TCGA-52-7809-01 19 55098684 55098684 C T LILRA2 Silent p.H441H 0.22 TCGA-52-7809-01 19 57035800 57035800 G T ZNF471 Nonsense_Mutation p.E122* 0.58 TCGA-52-7809-01 19 57290818 57290818 G A ZIM2 Silent p.D223D 0.47 TCGA-52-7809-01 19 57840670 57840670 G C ZNF543 3'UTR 0.26 TCGA-52-7809-01 19 7685493 7685493 G C XAB2 Silent p.L678L 0.57 TCGA-52-7809-01 19 9063418 9063418 C A MUC16 Missense_Mutation p.A8010S 0.56 unknown(0) TCGA-52-7809-01 1 11177112 11177112 C T MTOR Missense_Mutation p.R2322H 0.08 deleterious(0) probably_damaging(0.997) TCGA-52-7809-01 1 112524984 112524984 C - KCND3 Frame_Shift_Del p.G122Afs*67 0.12 TCGA-52-7809-01 1 113460346 113460346 C T SLC16A1 Missense_Mutation p.D228N 0.07 tolerated(0.3) benign(0.005) TCGA-52-7809-01 1 114948171 114948171 C T TRIM33 Missense_Mutation p.D877N 0.16 tolerated(0.17) benign(0.001) TCGA-52-7809-01 1 145293417 145293417 A T NBPF10 Silent p.S4S 0.03 TCGA-52-7809-01 1 151090703 151090703 A G GABPB2 Missense_Mutation p.R440G 0.38 tolerated_low_confidence(1) benign(0) TCGA-52-7809-01 1 152084338 152084338 T C TCHH Missense_Mutation p.E452G 0.36 unknown(0) TCGA-52-7809-01 1 152284414 152284414 C T FLG Missense_Mutation p.R983K 0.14 probably_damaging(0.983) TCGA-52-7809-01 1 156290704 156290704 C A CCT3 Missense_Mutation p.A179S 0.34 tolerated(0.05) possibly_damaging(0.808) TCGA-52-7809-01 1 156565178 156565178 C T GPATCH4 Missense_Mutation p.E319K 0.05 tolerated_low_confidence(0.09) benign(0.008) TCGA-52-7809-01 1 157567720 157567720 C T FCRL4 Silent p.A5A 0.34 TCGA-52-7809-01 1 157739859 157739859 C G FCRL2 Missense_Mutation p.R131P 0.30 tolerated(0.11) benign(0.019) TCGA-52-7809-01 1 158226709 158226709 C A CD1A Silent p.G246G 0.35 TCGA-52-7809-01 1 159161728 159161728 A T CADM3 Missense_Mutation p.S65C 0.26 deleterious(0.02) probably_damaging(0.997) TCGA-52-7809-01 1 161293426 161293426 C T SDHC Nonsense_Mutation p.R15* 0.37 TCGA-52-7809-01 1 173907729 173907729 T C RC3H1 3'UTR 0.31 TCGA-52-7809-01 1 175046749 175046749 C T TNN Silent p.L65L 0.17 TCGA-52-7809-01 1 197403999 197403999 C A CRB1 Missense_Mutation p.S1002R 0.13 tolerated(0.1) benign(0.056) TCGA-52-7809-01 1 202715048 202715048 G C KDM5B Missense_Mutation p.S754C 0.36 deleterious(0.01) probably_damaging(0.947) TCGA-52-7809-01 1 205038678 205038678 G A CNTN2 Missense_Mutation p.V729I 0.09 tolerated(1) benign(0.005) TCGA-52-7809-01 1 205126464 205126464 C A DSTYK Missense_Mutation p.E763D 0.26 deleterious(0.01) possibly_damaging(0.733) TCGA-52-7809-01 1 21221968 21221968 C A EIF4G3 Missense_Mutation p.G626C 0.32 deleterious(0) probably_damaging(0.981) TCGA-52-7809-01 1 213161979 213161979 T C VASH2 3'UTR 0.36 TCGA-52-7809-01 1 21584024 21584024 G C ECE1 Missense_Mutation p.N274K 0.15 deleterious(0.02) benign(0.029) TCGA-52-7809-01 1 216595581 216595581 G T USH2A Nonsense_Mutation p.S33* 0.31 TCGA-52-7809-01 1 230883212 230883212 C T CAPN9 5'UTR 0.07 TCGA-52-7809-01 1 235956833 235956833 C G LYST Missense_Mutation p.L1362F 0.12 tolerated(0.06) probably_damaging(0.971) TCGA-52-7809-01 1 248059653 248059653 C T OR2W3 Silent p.I255I 0.31 TCGA-52-7809-01 1 248201871 248201871 T A OR2L2 Missense_Mutation p.F101Y 0.18 deleterious(0.01) benign(0.157) TCGA-52-7809-01 1 27105840 27105840 A G ARID1A Silent p.V1817V 0.22 TCGA-52-7809-01 1 28800289 28800289 T A PHACTR4 Silent p.T359T 0.05 TCGA-52-7809-01 1 34158654 34158654 C G CSMD2 Missense_Mutation p.E1270Q 0.19 deleterious(0.03) probably_damaging(0.96) TCGA-52-7809-01 1 36026657 36026657 C A NCDN Missense_Mutation p.S302Y 0.34 deleterious(0.02) benign(0.392) TCGA-52-7809-01 1 3662521 3662521 C T TP73-AS1 RNA 0.26 TCGA-52-7809-01 1 43232488 43232488 G A LEPRE1 Missense_Mutation p.P52L 0.45 tolerated(0.65) benign(0.004) TCGA-52-7809-01 1 65878762 65878762 C T DNAJC6 3'UTR 0.35 TCGA-52-7809-01 1 74737308 74737308 G T FPGT-TNNI3K Silent p.L234L 0.23 TCGA-52-7809-01 20 2591074 2591074 G A TMC2 Missense_Mutation p.V475M 0.57 deleterious(0) possibly_damaging(0.701) TCGA-52-7809-01 20 30745611 30745611 C G TM9SF4 Silent p.T448T 0.04 TCGA-52-7809-01 20 41419976 41419976 G A PTPRT Silent p.S115S 0.68 TCGA-52-7809-01 20 43564088 43564088 C T PABPC1L Missense_Mutation p.R501W 0.55 deleterious(0.01) possibly_damaging(0.582) TCGA-52-7809-01 20 50408013 50408013 G C SALL4 Missense_Mutation p.Q337E 0.72 deleterious(0) benign(0.08) TCGA-52-7809-01 22 18300174 18300174 C A MICAL3 Missense_Mutation p.K1751N 0.39 possibly_damaging(0.462) TCGA-52-7809-01 22 26937143 26937143 C G TPST2 Missense_Mutation p.A152P 0.15 deleterious(0) probably_damaging(0.999) TCGA-52-7809-01 22 26937147 26937147 C G TPST2 Missense_Mutation p.E150D 0.16 tolerated(0.12) benign(0.015) TCGA-52-7809-01 22 31043008 31043008 A C SLC35E4 Missense_Mutation p.K348T 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.858) TCGA-52-7809-01 22 37872996 37872996 G A MFNG Silent p.A195A 0.13 TCGA-52-7809-01 22 39996539 39996539 C T CACNA1I Silent p.F121F 0.40 TCGA-52-7809-01 22 42781140 42781140 C A NFAM1 3'UTR 0.35 TCGA-52-7809-01 2 121744139 121744139 G T GLI2 Missense_Mutation p.G748W 0.55 deleterious(0) probably_damaging(1) TCGA-52-7809-01 2 128377950 128377951 CG - MYO7B Frame_Shift_Del p.S1119* 0.42 TCGA-52-7809-01 2 131985918 131985918 C T POTEE Missense_Mutation p.T340M 0.35 tolerated_low_confidence(0.08) benign(0.282) TCGA-52-7809-01 2 141473566 141473566 G A LRP1B Missense_Mutation p.S2000F 0.08 possibly_damaging(0.788) TCGA-52-7809-01 2 168107215 168107215 G C XIRP2 Missense_Mutation p.D3105H 0.57 benign(0.024) TCGA-52-7809-01 2 179392029 179392029 G T TTN Missense_Mutation p.P35896T 0.53 TCGA-52-7809-01 2 179426595 179426595 G C TTN Missense_Mutation p.S28088R 0.50 TCGA-52-7809-01 2 179702252 179702252 T C CCDC141 Missense_Mutation p.M1232V 0.28 tolerated(0.28) benign(0.281) TCGA-52-7809-01 2 1843011 1843011 C G MYT1L Missense_Mutation p.W995S 0.12 deleterious(0.01) probably_damaging(1) TCGA-52-7809-01 2 200233399 200233399 T C SATB2 Missense_Mutation p.Y210C 0.45 deleterious(0) probably_damaging(0.99) TCGA-52-7809-01 2 210560108 210560108 C T MAP2 Missense_Mutation p.L1072F 0.26 tolerated_low_confidence(0.6) benign(0.012) TCGA-52-7809-01 2 228128534 228128534 C T COL4A3 Missense_Mutation p.P397S 0.64 probably_damaging(1) TCGA-52-7809-01 2 228860280 228860280 C A SPHKAP Nonsense_Mutation p.E1527* 0.69 TCGA-52-7809-01 2 238277484 238277484 G A COL6A3 Missense_Mutation p.P1541L 0.65 probably_damaging(1) TCGA-52-7809-01 2 242402803 242402803 G A FARP2 Silent p.T577T 0.60 TCGA-52-7809-01 2 29226438 29226438 C T FAM179A Silent p.I240I 0.70 TCGA-52-7809-01 2 29366599 29366599 G C CLIP4 Missense_Mutation p.D225H 0.65 deleterious(0) probably_damaging(0.952) TCGA-52-7809-01 2 33813556 33813556 C G FAM98A Missense_Mutation p.R123T 0.17 deleterious(0) probably_damaging(0.974) TCGA-52-7809-01 2 49244689 49244689 C A FSHR Missense_Mutation p.A105S 0.61 tolerated(0.16) benign(0.163) TCGA-52-7809-01 2 54876253 54876253 C A SPTBN1 Missense_Mutation p.L1710M 0.29 deleterious(0) probably_damaging(0.998) TCGA-52-7809-01 2 55408853 55408853 A C CLHC1 Missense_Mutation p.L345R 0.17 deleterious(0.02) probably_damaging(0.925) TCGA-52-7809-01 2 66796151 66796151 G A MEIS1 Intron 0.23 TCGA-52-7809-01 2 68621270 68621270 G C PLEK Missense_Mutation p.R293T 0.07 deleterious(0) probably_damaging(1) TCGA-52-7809-01 2 73828471 73828471 G T ALMS1 Missense_Mutation p.G4007W 0.06 probably_damaging(0.988) TCGA-52-7809-01 2 80816543 80816543 G T CTNNA2 Missense_Mutation p.G708C 0.65 deleterious(0) probably_damaging(0.988) TCGA-52-7809-01 3 119120939 119120939 C - ARHGAP31 Frame_Shift_Del p.P448Qfs*37 0.36 TCGA-52-7809-01 3 122274833 122274833 G C PARP9 Missense_Mutation p.S97C 0.43 tolerated(0.1) benign(0.019) TCGA-52-7809-01 3 126180405 126180405 G C ZXDC Silent p.L700L 0.36 TCGA-52-7809-01 3 147128809 147128809 T A ZIC1 Missense_Mutation p.C304S 0.26 deleterious(0) probably_damaging(0.975) TCGA-52-7809-01 3 183854402 183854402 C T EIF2B5 Silent p.V66V 0.08 TCGA-52-7809-01 3 3134047 3134047 C T IL5RA Splice_Site p.X286_splice 0.29 TCGA-52-7809-01 3 38318447 38318447 G T SLC22A13 Missense_Mutation p.G464V 0.39 deleterious(0) probably_damaging(0.999) TCGA-52-7809-01 3 38888460 38888460 C T SCN11A Missense_Mutation p.D1701N 0.48 deleterious(0) probably_damaging(0.997) TCGA-52-7809-01 3 46492120 46492120 G T LTF Silent p.L249L 0.35 TCGA-52-7809-01 3 49294704 49294704 G T CCDC36 Missense_Mutation p.D592Y 0.29 deleterious(0) unknown(0) TCGA-52-7809-01 3 97202799 97202799 C G EPHA6 Missense_Mutation p.T699S 0.23 tolerated(0.07) probably_damaging(0.997) TCGA-52-7809-01 3 97868731 97868731 T C OR5H14 Missense_Mutation p.F168L 0.39 deleterious(0) probably_damaging(0.993) TCGA-52-7809-01 4 107168402 107168402 C G TBCK Missense_Mutation p.E275D 0.26 tolerated(0.51) benign(0.002) TCGA-52-7809-01 4 158238817 158238817 C T GRIA2 Missense_Mutation p.T225I 0.27 tolerated(0.24) benign(0.112) TCGA-52-7809-01 4 159554554 159554554 C T RXFP1 Intron 0.27 TCGA-52-7809-01 4 170017810 170017810 G A SH3RF1 Nonsense_Mutation p.Q843* 0.40 TCGA-52-7809-01 4 190862160 190862160 G T FRG1 5'UTR 0.24 TCGA-52-7809-01 4 1932378 1932378 C T WHSC1 Missense_Mutation p.S479L 0.26 tolerated(0.11) probably_damaging(0.932) TCGA-52-7809-01 4 57796243 57796243 C T REST Missense_Mutation p.H407Y 0.20 deleterious(0) probably_damaging(0.974) TCGA-52-7809-01 4 5961105 5961105 C T C4orf50 Missense_Mutation p.M750I 0.09 tolerated_low_confidence(0.28) benign(0) TCGA-52-7809-01 4 6302627 6302627 A T WFS1 Nonsense_Mutation p.K369* 0.23 TCGA-52-7809-01 4 70460968 70460968 C T UGT2A1 Splice_Site p.X499_splice 0.17 TCGA-52-7809-01 4 89042814 89042814 G C ABCG2 Missense_Mutation p.A221G 0.21 deleterious(0) probably_damaging(0.995) TCGA-52-7809-01 4 98893591 98893591 C A STPG2 Missense_Mutation p.G258V 0.10 deleterious(0) probably_damaging(1) TCGA-52-7809-01 5 140229394 140229394 G A PCDHA9 Silent p.T438T 0.23 TCGA-52-7809-01 5 140729928 140729928 C T PCDHGB1 Missense_Mutation p.T34M 0.41 deleterious(0.01) possibly_damaging(0.775) TCGA-52-7809-01 5 140740267 140740267 C A PCDHGB2 Missense_Mutation p.R189S 0.52 tolerated(1) benign(0.007) TCGA-52-7809-01 5 140762891 140762891 T C PCDHGA7 Missense_Mutation p.I142T 0.14 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-52-7809-01 5 141248760 141248760 C G PCDH1 Missense_Mutation p.E93Q 0.60 tolerated(0.25) probably_damaging(0.999) TCGA-52-7809-01 5 1443322 1443322 G T SLC6A3 5'UTR 0.40 TCGA-52-7809-01 5 149227194 149227194 G C PPARGC1B 3'UTR 0.17 TCGA-52-7809-01 5 153182042 153182042 C A GRIA1 Silent p.R848R 0.28 TCGA-52-7809-01 5 173140 173140 G T PLEKHG4B Silent p.V1037V 0.36 TCGA-52-7809-01 5 37815927 37815927 T A GDNF Silent p.T171T 0.14 TCGA-52-7809-01 5 42807132 42807132 G C SEPP1 Missense_Mutation p.I94M 0.10 tolerated(0.24) benign(0.02) TCGA-52-7809-01 5 45262078 45262078 G T HCN1 Nonsense_Mutation p.S873* 0.27 TCGA-52-7809-01 5 52096604 52096604 G A PELO Missense_Mutation p.E126K 0.09 tolerated(0.39) benign(0.094) TCGA-52-7809-01 5 55422867 55422867 C T ANKRD55 Missense_Mutation p.D227N 0.30 deleterious(0.02) probably_damaging(0.998) TCGA-52-7809-01 5 76249946 76249946 G C CRHBP Missense_Mutation p.E90Q 0.53 tolerated(0.26) benign(0.049) TCGA-52-7809-01 5 79032967 79032967 G T CMYA5 Missense_Mutation p.R2793S 0.09 benign(0.092) TCGA-52-7809-01 5 89979742 89979742 A T GPR98 Missense_Mutation p.I2002L 0.73 possibly_damaging(0.718) TCGA-52-7809-01 6 10407064 10407064 G T TFAP2A Missense_Mutation p.P165Q 0.27 tolerated(1) benign(0.018) TCGA-52-7809-01 6 109321777 109321777 C T SESN1 Missense_Mutation p.A216T 0.15 tolerated(0.28) probably_damaging(0.999) TCGA-52-7809-01 6 111587324 111587324 G T KIAA1919 Missense_Mutation p.A187S 0.09 deleterious(0.04) benign(0.264) TCGA-52-7809-01 6 114379194 114379194 G A HS3ST5 Missense_Mutation p.L90F 0.29 deleterious(0.03) possibly_damaging(0.727) TCGA-52-7809-01 6 117709108 117709108 G C ROS1 Missense_Mutation p.Q617E 0.24 tolerated(0.33) benign(0.025) TCGA-52-7809-01 6 127517121 127517121 A T RSPO3 Missense_Mutation p.Q263L 0.33 deleterious_low_confidence(0.01) unknown(0) TCGA-52-7809-01 6 132186018 132186018 C A ENPP1 Nonsense_Mutation p.Y368* 0.18 TCGA-52-7809-01 6 132824727 132824727 C G STX7 Intron 0.26 TCGA-52-7809-01 6 152763227 152763227 G T SYNE1 Missense_Mutation p.Q1331K 0.17 benign(0.024) TCGA-52-7809-01 6 160668228 160668228 G A SLC22A2 Silent p.P315P 0.25 TCGA-52-7809-01 6 167570439 167570439 C T GPR31 Missense_Mutation p.R294Q 0.38 tolerated(0.09) benign(0.158) TCGA-52-7809-01 6 170072396 170072396 C T WDR27 Missense_Mutation p.V96I 0.15 tolerated(0.22) benign(0.045) TCGA-52-7809-01 6 26204945 26204945 G C HIST1H4E Missense_Mutation p.D25H 0.23 deleterious_low_confidence(0) possibly_damaging(0.584) TCGA-52-7809-01 6 27799023 27799023 C A HIST1H4K Missense_Mutation p.G95C 0.29 deleterious(0) probably_damaging(0.994) TCGA-52-7809-01 6 27879399 27879399 A G OR2B2 Silent p.G233G 0.21 TCGA-52-7809-01 6 28554143 28554143 C T SCAND3 Missense_Mutation p.E118K 0.31 deleterious_low_confidence(0.01) benign(0.008) TCGA-52-7809-01 6 28829644 28829644 C T XXbac-BPG308K3.6 RNA 0.21 TCGA-52-7809-01 6 29429766 29429766 A T OR2H1 Missense_Mutation p.S74C 0.17 deleterious(0.04) benign(0.013) TCGA-52-7809-01 6 29976931 29976931 G C ZNRD1-AS1 RNA 0.15 TCGA-52-7809-01 6 30877261 30877261 G C GTF2H4 Missense_Mutation p.E63Q 0.29 deleterious(0.05) probably_damaging(0.971) TCGA-52-7809-01 6 39304300 39304300 C A KIF6 3'UTR 0.16 TCGA-52-7809-01 6 41557906 41557906 C T FOXP4 Missense_Mutation p.S452L 0.15 deleterious(0.01) benign(0.341) TCGA-52-7809-01 6 44200559 44200559 C T SLC29A1 Missense_Mutation p.R359C 0.26 tolerated(0.22) benign(0.005) TCGA-52-7809-01 6 55638882 55638882 G C BMP5 Missense_Mutation p.S331C 0.41 deleterious(0.02) possibly_damaging(0.571) TCGA-52-7809-01 6 70386343 70386343 C A LMBRD1 Missense_Mutation p.G503V 0.15 tolerated(0.98) benign(0.002) TCGA-52-7809-01 6 79650442 79650442 C T PHIP Missense_Mutation p.E1812K 0.21 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-52-7809-01 6 8430324 8430324 C T SLC35B3 Missense_Mutation p.E24K 0.13 tolerated_low_confidence(0.83) benign(0) TCGA-52-7809-01 7 100198213 100198213 C T FBXO24 Silent p.S516S 0.16 TCGA-52-7809-01 7 107872770 107872770 T A NRCAM Nonsense_Mutation p.R143* 0.35 TCGA-52-7809-01 7 154561221 154561221 G T DPP6 Missense_Mutation p.M326I 0.62 deleterious(0) possibly_damaging(0.83) TCGA-52-7809-01 7 154863226 154863226 T C HTR5A Missense_Mutation p.V206A 0.72 tolerated(0.41) benign(0.062) TCGA-52-7809-01 7 155604708 155604709 - G SHH Frame_Shift_Ins p.K37Qfs*27 0.35 TCGA-52-7809-01 7 2565936 2565936 G A LFNG Missense_Mutation p.G294S 0.15 deleterious(0) probably_damaging(0.998) TCGA-52-7809-01 7 38530649 38530649 C A AMPH Splice_Site p.X132_splice 0.12 TCGA-52-7809-01 7 45614635 45614635 C T ADCY1 Nonsense_Mutation p.Q165* 0.19 TCGA-52-7809-01 7 4949602 4949602 G T MMD2 Silent p.G173G 0.34 TCGA-52-7809-01 7 53104131 53104131 T C POM121L12 Missense_Mutation p.L256P 0.26 tolerated_low_confidence(0.34) probably_damaging(0.955) TCGA-52-7809-01 7 5769068 5769068 G A RNF216 Nonsense_Mutation p.R462* 0.38 TCGA-52-7809-01 7 64853813 64853813 A G ZNF92 Silent p.P75P 0.30 TCGA-52-7809-01 7 71177054 71177055 - G WBSCR17 Frame_Shift_Ins p.L576Pfs*19 0.28 TCGA-52-7809-01 7 73097503 73097503 C A DNAJC30 Missense_Mutation p.S84I 0.42 deleterious(0) probably_damaging(0.979) TCGA-52-7809-01 7 82582535 82582535 T G PCLO Missense_Mutation p.E2578D 0.31 unknown(0) TCGA-52-7809-01 7 87778308 87778308 C T ADAM22 Missense_Mutation p.T501I 0.14 tolerated(0.13) benign(0.004) TCGA-52-7809-01 7 99359683 99359683 C T CYP3A4 Missense_Mutation p.E412K 0.31 deleterious(0.02) benign(0.08) TCGA-52-7809-01 8 110476829 110476829 A C PKHD1L1 Missense_Mutation p.N2590H 0.17 tolerated(0.11) benign(0.007) TCGA-52-7809-01 8 1998919 1998919 T C MYOM2 Silent p.H13H 0.41 TCGA-52-7809-01 8 22429892 22429892 C T SORBS3 Silent p.D629D 0.05 TCGA-52-7809-01 8 27288870 27288870 G T PTK2B Intron 0.43 TCGA-52-7809-01 8 38133146 38133146 G A WHSC1L1 3'UTR 0.14 TCGA-52-7809-01 8 57228680 57228680 C T SDR16C5 Missense_Mutation p.G76E 0.41 deleterious(0) benign(0.446) TCGA-52-7809-01 8 6874249 6874249 C G DEFA3 Missense_Mutation p.E42Q 0.15 deleterious(0.01) probably_damaging(0.982) TCGA-52-7809-01 8 77763571 77763571 G T ZFHX4 Nonsense_Mutation p.E1472* 0.59 TCGA-52-7809-01 8 77763932 77763932 C A ZFHX4 Missense_Mutation p.P1592H 0.44 probably_damaging(0.95) TCGA-52-7809-01 8 87242035 87242035 A G SLC7A13 Missense_Mutation p.W158R 0.23 tolerated(0.06) benign(0.326) TCGA-52-7809-01 9 119065075 119065075 T A PAPPA Missense_Mutation p.V998E 0.18 deleterious(0) benign(0.403) TCGA-52-7809-01 9 127651419 127651419 T G GOLGA1 Intron 0.40 TCGA-52-7809-01 9 134308166 134308166 A T PRRC2B Missense_Mutation p.Q93L 0.59 deleterious(0) possibly_damaging(0.61) TCGA-52-7809-01 9 135931457 135931457 A G GTF3C5 Missense_Mutation p.Q416R 0.24 deleterious(0) probably_damaging(0.998) TCGA-52-7809-01 9 34310828 34310828 A T KIF24 Missense_Mutation p.S173T 0.41 tolerated(0.06) possibly_damaging(0.493) TCGA-52-7809-01 9 382584 382584 T A DOCK8 Missense_Mutation p.S893T 0.34 tolerated(0.44) benign(0.211) TCGA-52-7809-01 9 38396713 38396713 C T ALDH1B1 Missense_Mutation p.S323F 0.50 deleterious(0.01) benign(0.036) TCGA-52-7809-01 9 86292749 86292749 G A UBQLN1 Missense_Mutation p.S333L 0.15 tolerated(0.08) benign(0.024) TCGA-52-7809-01 9 97873833 97873833 G T FANCC Nonsense_Mutation p.S414* 0.21 TCGA-52-7809-01 X 119664106 119664106 C A CUL4B Nonsense_Mutation p.E833* 0.66 TCGA-52-7809-01 X 125299530 125299530 C G DCAF12L2 Missense_Mutation p.Q126H 0.59 tolerated(0.73) benign(0.001) TCGA-52-7809-01 X 138820091 138820091 C T ATP11C Missense_Mutation p.R1094K 0.19 tolerated(0.3) benign(0.001) TCGA-52-7809-01 X 144337404 144337404 C A SPANXN1 3'UTR 0.38 TCGA-52-7809-01 X 151303247 151303247 C G MAGEA10 Missense_Mutation p.E282D 0.25 deleterious(0.02) benign(0.095) TCGA-52-7809-01 X 152091288 152091288 G A ZNF185 Silent p.A254A 0.62 TCGA-52-7809-01 X 153716964 153716964 T A SLC10A3 Missense_Mutation p.R106W 0.34 tolerated(0.17) benign(0.003) TCGA-52-7809-01 X 155004340 155004340 G A SPRY3 Silent p.V269V 0.49 TCGA-52-7809-01 X 23897093 23897093 T C APOO Missense_Mutation p.Q59R 0.52 tolerated(0.07) benign(0.039) TCGA-52-7809-01 X 55650199 55650199 C A FOXR2 Missense_Mutation p.P19T 0.66 deleterious(0) probably_damaging(1) TCGA-52-7810-01 10 103773780 103773780 G A C10orf76 Missense_Mutation p.S224F 0.36 deleterious(0.01) possibly_damaging(0.851) TCGA-52-7810-01 10 11363249 11363249 G T CELF2 Missense_Mutation p.Q398H 0.22 tolerated(0.07) possibly_damaging(0.87) TCGA-52-7810-01 10 15821084 15821084 C G FAM188A Missense_Mutation p.Q415H 0.28 tolerated(0.47) benign(0.003) TCGA-52-7810-01 10 16877068 16877068 A T CUBN Missense_Mutation p.F3436Y 0.30 tolerated(0.13) probably_damaging(1) TCGA-52-7810-01 10 49791090 49791093 TCTG CCT ARHGAP22 Frame_Shift_Del p.Q47Rfs*5 0.17 TCGA-52-7810-01 10 55566405 55566405 C G PCDH15 Missense_Mutation p.Q1660H 0.38 tolerated_low_confidence(0.08) benign(0) TCGA-52-7810-01 10 68687574 68687574 T A LRRTM3 Silent p.S300S 0.19 TCGA-52-7810-01 10 70644054 70644054 C G STOX1 Missense_Mutation p.L168V 0.14 deleterious(0) probably_damaging(1) TCGA-52-7810-01 10 70863643 70863643 G A SRGN Missense_Mutation p.D82N 0.14 tolerated(1) benign(0.002) TCGA-52-7810-01 10 76910642 76910642 G A SAMD8 Missense_Mutation p.C119Y 0.36 tolerated(1) benign(0.001) TCGA-52-7810-01 10 85984254 85984254 G A LRIT2 Missense_Mutation p.H243Y 0.34 tolerated(0.11) benign(0.323) TCGA-52-7810-01 10 88683422 88683422 G A BMPR1A Silent p.L515L 0.21 TCGA-52-7810-01 10 88911127 88911127 C G FAM35A Missense_Mutation p.Q6E 0.23 tolerated(0.08) benign(0.084) TCGA-52-7810-01 10 97366583 97366583 G A ALDH18A1 Missense_Mutation p.S775L 0.44 deleterious(0.04) benign(0.407) TCGA-52-7810-01 10 97918967 97918967 C T ZNF518A RNA 0.18 TCGA-52-7810-01 11 105881317 105881317 C G MSANTD4 Missense_Mutation p.E110Q 0.25 tolerated(0.55) benign(0.107) TCGA-52-7810-01 11 108224558 108224558 G C ATM Missense_Mutation p.D2913H 0.29 deleterious(0) probably_damaging(1) TCGA-52-7810-01 11 118348688 118348688 C T KMT2A Missense_Mutation p.S1114L 0.31 probably_damaging(0.961) TCGA-52-7810-01 11 118376478 118376478 A C KMT2A Silent p.R3291R 0.09 TCGA-52-7810-01 11 118917294 118917295 - C HYOU1 Frame_Shift_Ins p.E939Gfs*11 0.35 TCGA-52-7810-01 11 123599887 123599887 C G ZNF202 Missense_Mutation p.E217Q 0.16 deleterious(0.01) possibly_damaging(0.664) TCGA-52-7810-01 11 123886605 123886605 C A OR10G4 Missense_Mutation p.S108R 0.28 deleterious(0.04) possibly_damaging(0.581) TCGA-52-7810-01 11 124294383 124294383 G T OR8B4 Missense_Mutation p.L129M 0.31 deleterious_low_confidence(0) possibly_damaging(0.69) TCGA-52-7810-01 11 126294766 126294766 C G KIRREL3 Silent p.L682L 0.16 TCGA-52-7810-01 11 130785268 130785268 C A SNX19 Missense_Mutation p.W189C 0.37 deleterious(0) probably_damaging(0.999) TCGA-52-7810-01 11 20623103 20623103 C T SLC6A5 Silent p.N144N 0.33 TCGA-52-7810-01 11 26695034 26695034 G A SLC5A12 Missense_Mutation p.P541L 0.28 deleterious(0.04) probably_damaging(0.92) TCGA-52-7810-01 11 30032959 30032959 G - KCNA4 Frame_Shift_Del p.L423Wfs*59 0.27 TCGA-52-7810-01 11 33792313 33792313 A G FBXO3 Silent p.H56H 0.04 TCGA-52-7810-01 11 36293372 36293372 C T COMMD9 3'Flank 0.33 TCGA-52-7810-01 11 47296619 47296619 C T MADD Nonsense_Mutation p.R190* 0.40 TCGA-52-7810-01 11 47360158 47360158 C - MYBPC3 Frame_Shift_Del p.A741Qfs*13 0.26 TCGA-52-7810-01 11 47809814 47809814 C A NUP160 Silent p.A1222A 0.47 TCGA-52-7810-01 11 50003398 50003398 C A OR4C12 Missense_Mutation p.V214L 0.31 tolerated_low_confidence(0.08) benign(0.015) TCGA-52-7810-01 11 55655507 55655507 G A TRIM51 Splice_Site p.X170_splice 0.30 TCGA-52-7810-01 11 58385168 58385168 G T ZFP91 Missense_Mutation p.A568S 0.16 tolerated_low_confidence(0.07) benign(0.118) TCGA-52-7810-01 11 58385169 58385169 C G ZFP91 Missense_Mutation p.A568G 0.17 deleterious_low_confidence(0) benign(0.159) TCGA-52-7810-01 11 59211463 59211463 C T OR5A1 Silent p.D274D 0.30 TCGA-52-7810-01 11 60150607 60150607 T C MS4A7 5'UTR 0.26 TCGA-52-7810-01 11 62568656 62568656 C T NXF1 Silent p.L272L 0.15 TCGA-52-7810-01 11 63671469 63671469 C T MARK2 Missense_Mutation p.P509L 0.50 tolerated(0.14) benign(0.049) TCGA-52-7810-01 11 6413163 6413163 A T SMPD1 Missense_Mutation p.T290S 0.29 tolerated(0.66) benign(0.012) TCGA-52-7810-01 11 65385800 65385800 C G PCNXL3 Missense_Mutation p.L323V 0.15 tolerated(0.46) benign(0.076) TCGA-52-7810-01 11 65386185 65386185 C T PCNXL3 Missense_Mutation p.S451F 0.33 deleterious(0) possibly_damaging(0.897) TCGA-52-7810-01 11 65622918 65622918 C T CFL1 Silent p.G130G 0.36 TCGA-52-7810-01 11 66191324 66191324 C T NPAS4 Silent p.S321S 0.14 TCGA-52-7810-01 11 69978054 69978054 T C ANO1 Missense_Mutation p.I376T 0.59 deleterious(0.02) possibly_damaging(0.7) TCGA-52-7810-01 11 77775029 77775029 C T THRSP Silent p.P34P 0.45 TCGA-52-7810-01 11 77825382 77825382 G C ALG8 Missense_Mutation p.I201M 0.23 deleterious(0) probably_damaging(0.934) TCGA-52-7810-01 11 8111203 8111203 C G TUB Missense_Mutation p.R84G 0.33 deleterious(0.02) probably_damaging(0.996) TCGA-52-7810-01 11 88029353 88029353 C A CTSC Missense_Mutation p.Q279H 0.31 tolerated(0.1) benign(0.146) TCGA-52-7810-01 11 92531916 92531916 G C FAT3 Missense_Mutation p.E1913Q 0.29 benign(0.006) TCGA-52-7810-01 12 10124223 10124223 C A CLEC12A Missense_Mutation p.L20I 0.38 deleterious(0.03) probably_damaging(0.954) TCGA-52-7810-01 12 101510480 101510480 C A ANO4 Missense_Mutation p.A790D 0.12 deleterious(0.05) benign(0.281) TCGA-52-7810-01 12 101510481 101510481 C A ANO4 Silent p.A790A 0.12 TCGA-52-7810-01 12 109182137 109182137 G C SSH1 Missense_Mutation p.S926C 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-52-7810-01 12 110729873 110729873 G T ATP2A2 Nonsense_Mutation p.E90* 0.47 TCGA-52-7810-01 12 121471391 121471391 C T OASL Silent p.L118L 0.54 TCGA-52-7810-01 12 121783822 121783822 C T ANAPC5 Missense_Mutation p.R137H 0.06 deleterious(0) probably_damaging(0.994) TCGA-52-7810-01 12 129558573 129558573 G A TMEM132D Silent p.T1049T 0.45 TCGA-52-7810-01 12 133234456 133234456 C A POLE Missense_Mutation p.A1126S 0.12 tolerated(0.92) benign(0.002) TCGA-52-7810-01 12 14774059 14774059 A T GUCY2C Nonsense_Mutation p.L898* 0.23 TCGA-52-7810-01 12 15134414 15134414 G T PDE6H 3'UTR 0.44 TCGA-52-7810-01 12 21689892 21689892 T C GYS2 Missense_Mutation p.N703S 0.34 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-52-7810-01 12 27180279 27180279 G C MED21 Splice_Site p.X53_splice 0.35 TCGA-52-7810-01 12 27235188 27235188 G C C12orf71 Missense_Mutation p.Q77E 0.36 tolerated(0.33) benign(0.006) TCGA-52-7810-01 12 45803201 45803201 C T ANO6 Nonsense_Mutation p.R669* 0.04 TCGA-52-7810-01 12 48482626 48482626 C G SENP1 Missense_Mutation p.R113T 0.08 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-52-7810-01 12 48577998 48577998 G C C12orf68 Silent p.V31V 0.77 TCGA-52-7810-01 12 49724530 49724530 G T TROAP Silent p.G634G 0.41 TCGA-52-7810-01 12 52680599 52680599 C T KRT81 Missense_Mutation p.E419K 0.52 deleterious(0.02) benign(0.191) TCGA-52-7810-01 12 53072443 53072443 T C KRT1 Missense_Mutation p.Y230C 0.33 deleterious(0.01) benign(0.021) TCGA-52-7810-01 12 53292529 53292529 T G KRT8 Missense_Mutation p.N407T 0.25 deleterious(0.01) benign(0.168) TCGA-52-7810-01 12 53410382 53410382 C A EIF4B Missense_Mutation p.L47M 0.13 tolerated(0.06) possibly_damaging(0.665) TCGA-52-7810-01 12 53873277 53873277 G A PCBP2 3'UTR 0.25 TCGA-52-7810-01 12 53875760 53875760 G A MAP3K12 Silent p.L849L 0.13 TCGA-52-7810-01 12 54914488 54914488 C T NCKAP1L Missense_Mutation p.R546C 0.39 deleterious(0) probably_damaging(0.982) TCGA-52-7810-01 12 56522358 56522358 C T ESYT1 Silent p.L85L 0.22 TCGA-52-7810-01 12 57662795 57662795 C G R3HDM2 Missense_Mutation p.Q581H 0.14 deleterious(0.01) benign(0.378) TCGA-52-7810-01 12 64873808 64873808 G A TBK1 Missense_Mutation p.G240R 0.23 deleterious(0.01) possibly_damaging(0.719) TCGA-52-7810-01 12 7848318 7848318 G A GDF3 Missense_Mutation p.R3C 0.42 deleterious_low_confidence(0.01) benign(0.183) TCGA-52-7810-01 12 8290779 8290779 G T CLEC4A Missense_Mutation p.V204F 0.29 deleterious(0) probably_damaging(0.997) TCGA-52-7810-01 12 93244909 93244909 T A EEA1 Missense_Mutation p.Q259L 0.21 deleterious(0) possibly_damaging(0.694) TCGA-52-7810-01 12 97334267 97334267 G A NEDD1 Missense_Mutation p.D407N 0.43 tolerated(0.21) probably_damaging(0.983) TCGA-52-7810-01 13 25370369 25370369 G A RNF17 Silent p.E445E 0.26 TCGA-52-7810-01 13 25370370 25370370 A T RNF17 Nonsense_Mutation p.K446* 0.27 TCGA-52-7810-01 13 25479869 25479869 G T CENPJ Silent p.I769I 0.27 TCGA-52-7810-01 13 32360767 32360767 C A RXFP2 Missense_Mutation p.Q356K 0.31 tolerated(0.59) benign(0.013) TCGA-52-7810-01 13 32810249 32810249 C A FRY Missense_Mutation p.A1917E 0.25 tolerated(0.06) benign(0.118) TCGA-52-7810-01 13 39587156 39587156 C A PROSER1 Missense_Mutation p.A745S 0.26 tolerated_low_confidence(0.54) benign(0.013) TCGA-52-7810-01 13 40251615 40251615 G T COG6 Nonsense_Mutation p.E147* 0.24 TCGA-52-7810-01 14 101510563 101510563 G T MIR1185-2 RNA 0.16 TCGA-52-7810-01 14 106642031 106642031 G T IGHV1-18 5'UTR 0.32 TCGA-52-7810-01 14 106642032 106642032 G T IGHV1-18 5'UTR 0.32 TCGA-52-7810-01 14 106725299 106725299 C G IGHV3-23 Missense_Mutation p.G85R 0.09 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-52-7810-01 14 20665769 20665769 G C OR11G2 Missense_Mutation p.R92T 0.19 deleterious(0.01) benign(0.285) TCGA-52-7810-01 14 20826039 20826039 A C PARP2 3'UTR 0.22 TCGA-52-7810-01 14 26917285 26917285 C G NOVA1 Missense_Mutation p.R468S 0.23 deleterious(0.01) possibly_damaging(0.805) TCGA-52-7810-01 14 39900897 39900897 C A FBXO33 Missense_Mutation p.G157V 0.26 tolerated_low_confidence(0.05) benign(0.016) TCGA-52-7810-01 14 51223751 51223751 C G NIN Missense_Mutation p.E1333Q 0.22 tolerated(0.11) benign(0.161) TCGA-52-7810-01 14 68878147 68878147 C T RAD51B Missense_Mutation p.S287F 0.23 deleterious(0.01) benign(0.1) TCGA-52-7810-01 14 74988693 74988693 G T LTBP2 Silent p.I903I 0.29 TCGA-52-7810-01 14 75376438 75376438 C T RPS6KL1 Missense_Mutation p.G360S 0.33 tolerated(0.21) benign(0.035) TCGA-52-7810-01 14 75469747 75469747 C T EIF2B2 Silent p.F18F 0.26 TCGA-52-7810-01 14 91791199 91791199 C G CCDC88C Missense_Mutation p.Q422H 0.18 deleterious(0.02) probably_damaging(1) TCGA-52-7810-01 14 94088383 94088383 A G UNC79 Missense_Mutation p.K1425E 0.22 deleterious_low_confidence(0) benign(0.159) TCGA-52-7810-01 15 23330246 23330246 C A HERC2P2 Intron 0.17 TCGA-52-7810-01 15 25494428 25494428 G C SNORD115-44 5'Flank 0.20 TCGA-52-7810-01 15 29561589 29561589 C A NDNL2 Missense_Mutation p.K107N 0.18 deleterious(0) possibly_damaging(0.875) TCGA-52-7810-01 15 34533004 34533004 A T SLC12A6 Missense_Mutation p.L765Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-52-7810-01 15 40866579 40866579 G C RPUSD2 3'UTR 0.15 TCGA-52-7810-01 15 50534761 50534761 T C HDC Missense_Mutation p.K562R 0.40 tolerated_low_confidence(0.09) benign(0.005) TCGA-52-7810-01 15 50555599 50555599 C G HDC Missense_Mutation p.E13Q 0.17 tolerated(0.11) benign(0.013) TCGA-52-7810-01 15 65239675 65239675 C T ANKDD1A Missense_Mutation p.R405W 0.35 tolerated(0.06) benign(0.015) TCGA-52-7810-01 15 65350892 65350892 C T RASL12 Missense_Mutation p.V100I 0.57 tolerated(1) benign(0.002) TCGA-52-7810-01 15 65945119 65945119 G T SLC24A1 Missense_Mutation p.G1008V 0.15 probably_damaging(0.999) TCGA-52-7810-01 15 74328357 74328357 C G PML Intron 0.34 TCGA-52-7810-01 15 74625093 74625093 G T CCDC33 Silent p.S615S 0.37 TCGA-52-7810-01 15 75013064 75013065 - GGG CYP1A1 In_Frame_Ins p.P435dup 0.39 TCGA-52-7810-01 15 78398016 78398016 C G CIB2 Intron 0.18 TCGA-52-7810-01 15 79088964 79088964 C A ADAMTS7 Missense_Mutation p.V263F 0.31 deleterious(0) probably_damaging(0.992) TCGA-52-7810-01 15 79088965 79088965 C A ADAMTS7 Missense_Mutation p.Q262H 0.31 tolerated(0.44) benign(0.005) TCGA-52-7810-01 15 79183854 79183856 CAG - MORF4L1 In_Frame_Del p.S166del 0.21 TCGA-52-7810-01 15 83932490 83932490 G A BNC1 Missense_Mutation p.P505S 0.40 deleterious(0) probably_damaging(0.999) TCGA-52-7810-01 15 94913388 94913388 C T MCTP2 Missense_Mutation p.L521F 0.39 deleterious(0) probably_damaging(0.999) TCGA-52-7810-01 15 96875643 96875643 C T NR2F2 Silent p.F103F 0.40 TCGA-52-7810-01 15 98513259 98513259 G C ARRDC4 Silent p.L343L 0.43 TCGA-52-7810-01 16 12136835 12136835 C A SNX29 Nonsense_Mutation p.S110* 0.29 TCGA-52-7810-01 16 21262196 21262196 C G ANKS4B 3'UTR 0.62 TCGA-52-7810-01 16 21737951 21737951 C T OTOA Missense_Mutation p.S663L 0.44 tolerated(0.54) benign(0.003) TCGA-52-7810-01 16 2817553 2817553 C A SRRM2 Silent p.R2342R 0.48 TCGA-52-7810-01 16 28513358 28513358 C A IL27 Missense_Mutation p.R134M 0.69 deleterious(0) possibly_damaging(0.789) TCGA-52-7810-01 16 48120659 48120659 C G ABCC12 Missense_Mutation p.R1236T 0.13 tolerated(0.34) benign(0.026) TCGA-52-7810-01 16 48256718 48256718 C A ABCC11 Nonsense_Mutation p.E190* 0.26 TCGA-52-7810-01 16 48595820 48595820 G A N4BP1 Missense_Mutation p.S245F 0.09 deleterious(0) possibly_damaging(0.677) TCGA-52-7810-01 16 49670636 49670637 AC - ZNF423 Frame_Shift_Del p.C809* 0.09 TCGA-52-7810-01 16 53499466 53499466 C G RBL2 Silent p.L605L 0.34 TCGA-52-7810-01 16 58438588 58438588 C T GINS3 Silent p.L241L 0.25 TCGA-52-7810-01 16 75327911 75327911 C A CFDP1 Missense_Mutation p.R280L 0.29 deleterious(0) probably_damaging(0.998) TCGA-52-7810-01 16 77317931 77317931 G A ADAMTS18 Silent p.H1196H 0.41 TCGA-52-7810-01 16 81095095 81095095 G A C16orf46 Nonsense_Mutation p.Q287* 0.34 TCGA-52-7810-01 16 81279157 81279157 A C BCMO1 Missense_Mutation p.N48H 0.15 deleterious(0.03) probably_damaging(0.996) TCGA-52-7810-01 16 816990 816990 C T MSLN Silent p.F501F 0.42 TCGA-52-7810-01 16 86544485 86544485 G C FOXF1 Missense_Mutation p.E104Q 0.43 deleterious(0) probably_damaging(0.999) TCGA-52-7810-01 16 87938421 87938421 T C CA5A Missense_Mutation p.T144A 0.11 tolerated(0.1) benign(0.058) TCGA-52-7810-01 16 88599081 88599081 G A ZFPM1 Missense_Mutation p.E336K 0.31 deleterious(0) probably_damaging(0.977) TCGA-52-7810-01 16 88723960 88723960 G C MVD Nonsense_Mutation p.S96* 0.14 TCGA-52-7810-01 16 89724821 89724821 C T SPATA33 Missense_Mutation p.S67L 0.36 tolerated(0.3) benign(0.094) TCGA-52-7810-01 17 10350401 10350401 C T MYH4 Missense_Mutation p.E1700K 0.47 deleterious(0) possibly_damaging(0.796) TCGA-52-7810-01 17 13503859 13503859 G A HS3ST3A1 Silent p.L196L 0.62 TCGA-52-7810-01 17 18418748 18418748 T A CTD-2303H24.2 RNA 0.10 TCGA-52-7810-01 17 26087189 26087189 C G NOS2 Missense_Mutation p.R1009P 0.20 tolerated(1) benign(0.015) TCGA-52-7810-01 17 26874696 26874696 C G UNC119 Silent p.L203L 0.22 TCGA-52-7810-01 17 26910945 26910945 C T RP11-192H23.4 Silent p.L229L 0.43 TCGA-52-7810-01 17 39120025 39120025 C G KRT39 Missense_Mutation p.E188Q 0.32 deleterious(0.01) probably_damaging(0.979) TCGA-52-7810-01 17 45913828 45913828 C T LRRC46 Silent p.F194F 0.33 TCGA-52-7810-01 17 46024119 46024119 G A PNPO Missense_Mutation p.D253N 0.22 tolerated(0.05) benign(0.004) TCGA-52-7810-01 17 46688346 46688346 T G HOXB7 5'UTR 0.05 TCGA-52-7810-01 17 47115631 47115631 G A IGF2BP1 Missense_Mutation p.R168Q 0.10 tolerated(0.1) benign(0.07) TCGA-52-7810-01 17 48434128 48434128 T G XYLT2 Missense_Mutation p.L580R 0.51 tolerated(0.54) benign(0.006) TCGA-52-7810-01 17 4937769 4937769 C A SLC52A1 Intron 0.52 TCGA-52-7810-01 17 56621500 56621500 C T C17orf47 Silent p.Q16Q 0.49 TCGA-52-7810-01 17 7577609 7577609 C T TP53 Splice_Site p.X225_splice 0.46 TCGA-52-7810-01 17 7910415 7910415 G T GUCY2D Silent p.L472L 0.50 TCGA-52-7810-01 17 8076840 8076840 C G TMEM107 3'Flank 0.45 TCGA-52-7810-01 17 8784223 8784223 T A PIK3R5 Nonsense_Mutation p.R832* 0.47 TCGA-52-7810-01 18 18534817 18534817 C A ROCK1 Missense_Mutation p.E1260D 0.33 deleterious(0) probably_damaging(0.995) TCGA-52-7810-01 18 44589396 44589396 C G KATNAL2 Silent p.T129T 0.12 TCGA-52-7810-01 18 44625719 44625719 G C KATNAL2 Silent p.V367V 0.43 TCGA-52-7810-01 18 49867099 49867099 C A DCC 5'UTR 0.40 TCGA-52-7810-01 19 10401939 10401939 G A ICAM5 Missense_Mutation p.E92K 0.27 tolerated(0.06) benign(0.38) TCGA-52-7810-01 19 12297846 12297846 A C ZNF136 Missense_Mutation p.H218P 0.07 deleterious(0) probably_damaging(0.999) TCGA-52-7810-01 19 15757859 15757859 C T CYP4F3 Intron 0.36 TCGA-52-7810-01 19 17025536 17025536 C A CPAMD8 Missense_Mutation p.W1286C 0.37 deleterious(0) probably_damaging(1) TCGA-52-7810-01 19 18942957 18942957 C A UPF1 5'UTR 0.25 TCGA-52-7810-01 19 22271031 22271031 C T ZNF257 Missense_Mutation p.S160L 0.33 tolerated(0.39) benign(0.001) TCGA-52-7810-01 19 22785428 22785428 G T AC011467.1 5'Flank 0.35 TCGA-52-7810-01 19 23329555 23329555 C G ZNF730 3'UTR 0.13 TCGA-52-7810-01 19 23926509 23926509 C T ZNF681 Missense_Mutation p.E615K 0.40 tolerated(0.07) benign(0) TCGA-52-7810-01 19 36317415 36317415 C A NPHS1 3'UTR 0.41 TCGA-52-7810-01 19 39306225 39306225 C G ECH1 3'UTR 0.50 TCGA-52-7810-01 19 46915629 46915629 C T CCDC8 Missense_Mutation p.E147K 0.49 probably_damaging(0.93) TCGA-52-7810-01 19 47201108 47201108 C T PRKD2 Splice_Site p.X374_splice 0.46 TCGA-52-7810-01 19 50314958 50314958 T C FUZ Splice_Site p.X107_splice 0.17 TCGA-52-7810-01 19 50413084 50413084 G A NUP62 5'UTR 0.13 TCGA-52-7810-01 19 50461759 50461759 G A SIGLEC11 Nonsense_Mutation p.Q478* 0.42 TCGA-52-7810-01 19 51379765 51379765 G C KLK2 Missense_Mutation p.E82Q 0.23 tolerated(0.3) benign(0.159) TCGA-52-7810-01 19 51961440 51961440 G C SIGLEC8 Missense_Mutation p.R68G 0.12 deleterious(0.01) benign(0.199) TCGA-52-7810-01 19 53912566 53912566 G C ZNF765 3'UTR 0.35 TCGA-52-7810-01 19 54313052 54313052 G A NLRP12 Nonsense_Mutation p.Q621* 0.10 TCGA-52-7810-01 19 55175796 55175796 G T LILRB4 Missense_Mutation p.G172V 0.31 tolerated(0.19) benign(0.007) TCGA-52-7810-01 19 56482064 56482064 T A NLRP8 Splice_Site p.X845_splice 0.24 TCGA-52-7810-01 19 6836563 6836563 A G VAV1 Missense_Mutation p.E633G 0.30 deleterious(0.03) benign(0.392) TCGA-52-7810-01 19 7706956 7706956 C T STXBP2 Silent p.V205V 0.32 TCGA-52-7810-01 19 8979216 8979216 C A MUC16 Splice_Site p.X14052_splice 0.30 TCGA-52-7810-01 19 9060766 9060766 T C MUC16 Missense_Mutation p.T8894A 0.12 unknown(0) TCGA-52-7810-01 19 9071154 9071154 C A MUC16 Missense_Mutation p.G5431V 0.30 unknown(0) TCGA-52-7810-01 19 9869117 9869117 G A ZNF846 Silent p.S212S 0.38 TCGA-52-7810-01 1 100553734 100553734 C G SASS6 Missense_Mutation p.G578A 0.31 tolerated(0.68) benign(0.004) TCGA-52-7810-01 1 111440442 111440442 G A CD53 Silent p.A172A 0.46 TCGA-52-7810-01 1 145586516 145586516 C G PIAS3 3'UTR 0.10 TCGA-52-7810-01 1 149857744 149857744 G A HIST2H2BE 3'UTR 0.43 TCGA-52-7810-01 1 150241172 150241172 C A APH1A Silent p.A13A 0.27 TCGA-52-7810-01 1 150252088 150252088 G A C1orf54 Missense_Mutation p.R112Q 0.28 tolerated_low_confidence(1) benign(0) TCGA-52-7810-01 1 152326029 152326029 C A FLG2 Missense_Mutation p.Q1411H 0.28 benign(0.011) TCGA-52-7810-01 1 152383177 152383177 C G CRNN Silent p.G127G 0.31 TCGA-52-7810-01 1 154076500 154076500 G A NUP210L Missense_Mutation p.L603F 0.31 tolerated(0.53) benign(0.027) TCGA-52-7810-01 1 154303521 154303521 C T ATP8B2 Intron 0.12 TCGA-52-7810-01 1 154304079 154304079 C G ATP8B2 Intron 0.28 TCGA-52-7810-01 1 155058607 155058607 C G EFNA3 Missense_Mutation p.S171W 0.33 deleterious(0) probably_damaging(0.962) TCGA-52-7810-01 1 156698862 156698862 G T RRNAD1 5'UTR 0.36 TCGA-52-7810-01 1 156878601 156878601 C T PEAR1 Nonsense_Mutation p.Q424* 0.20 TCGA-52-7810-01 1 158390007 158390007 G T OR10K2 Missense_Mutation p.S217Y 0.33 deleterious(0) probably_damaging(1) TCGA-52-7810-01 1 158596730 158596730 G T SPTA1 Missense_Mutation p.P1911H 0.31 tolerated(0.17) possibly_damaging(0.879) TCGA-52-7810-01 1 158596731 158596731 G T SPTA1 Missense_Mutation p.P1911T 0.32 tolerated(0.42) benign(0.065) TCGA-52-7810-01 1 158647527 158647527 G A SPTA1 Missense_Mutation p.H304Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-52-7810-01 1 158724850 158724850 C T OR6K6 Missense_Mutation p.A82V 0.33 tolerated(0.32) benign(0.003) TCGA-52-7810-01 1 161049455 161049455 C A PVRL4 Nonsense_Mutation p.E122* 0.28 TCGA-52-7810-01 1 161519682 161519682 C G FCGR3A 5'UTR 0.23 TCGA-52-7810-01 1 162326837 162326837 G C NOS1AP Missense_Mutation p.E284Q 0.31 tolerated(0.57) benign(0.024) TCGA-52-7810-01 1 16256904 16256904 C A SPEN Missense_Mutation p.S1390Y 0.33 possibly_damaging(0.701) TCGA-52-7810-01 1 16464648 16464648 C T EPHA2 Missense_Mutation p.V338M 0.27 tolerated(0.13) benign(0.007) TCGA-52-7810-01 1 167814982 167814982 G C ADCY10 Silent p.L942L 0.22 TCGA-52-7810-01 1 169338779 169338779 G C BLZF1 Missense_Mutation p.E7Q 0.15 tolerated_low_confidence(0.07) benign(0.016) TCGA-52-7810-01 1 175052942 175052942 G T TNN Missense_Mutation p.V369L 0.26 deleterious(0.04) probably_damaging(1) TCGA-52-7810-01 1 175334409 175334409 C T TNR Missense_Mutation p.R775H 0.18 tolerated(0.05) probably_damaging(1) TCGA-52-7810-01 1 176709227 176709227 G T PAPPA2 Missense_Mutation p.R1349L 0.31 tolerated(1) benign(0.001) TCGA-52-7810-01 1 176918473 176918473 G A ASTN1 Silent p.L634L 0.32 TCGA-52-7810-01 1 180012190 180012190 G C CEP350 Splice_Site p.X1455_splice 0.21 TCGA-52-7810-01 1 182827749 182827749 G C DHX9 Missense_Mutation p.E292Q 0.37 tolerated(0.13) benign(0.076) TCGA-52-7810-01 1 183881293 183881293 C G RGL1 Missense_Mutation p.S582C 0.35 deleterious(0.04) probably_damaging(0.993) TCGA-52-7810-01 1 1920338 1920338 C T C1orf222 Missense_Mutation p.G39R 0.57 tolerated(0.07) benign(0.361) TCGA-52-7810-01 1 204588979 204588979 G A LRRN2 Missense_Mutation p.R48C 0.24 deleterious(0.03) probably_damaging(0.964) TCGA-52-7810-01 1 206822278 206822278 C G DYRK3 Missense_Mutation p.L579V 0.18 tolerated_low_confidence(0.12) probably_damaging(0.978) TCGA-52-7810-01 1 2160559 2160559 G C SKI Missense_Mutation p.E118D 0.48 deleterious(0.02) benign(0.303) TCGA-52-7810-01 1 22150649 22150649 G A HSPG2 Silent p.I4288I 0.26 TCGA-52-7810-01 1 221879723 221879723 G T DUSP10 Silent p.G299G 0.25 TCGA-52-7810-01 1 233120117 233120117 C G PCNXL2 Missense_Mutation p.R2116T 0.31 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-52-7810-01 1 235969788 235969788 G A LYST Missense_Mutation p.P883L 0.22 deleterious_low_confidence(0.02) benign(0.004) TCGA-52-7810-01 1 236918390 236918390 G A ACTN2 Silent p.E682E 0.42 TCGA-52-7810-01 1 237753951 237753951 A G RYR2 Missense_Mutation p.I1273M 0.22 possibly_damaging(0.7) TCGA-52-7810-01 1 244587639 244587639 C T ADSS Missense_Mutation p.E153K 0.55 tolerated(0.11) benign(0.005) TCGA-52-7810-01 1 248343489 248343489 C A OR2M2 Missense_Mutation p.L68I 0.47 tolerated(0.18) possibly_damaging(0.899) TCGA-52-7810-01 1 248487212 248487212 C A OR2M7 Missense_Mutation p.R220L 0.19 tolerated(1) benign(0.396) TCGA-52-7810-01 1 248813709 248813709 G A OR2T27 Silent p.L159L 0.33 TCGA-52-7810-01 1 25549643 25549643 G C SYF2 3'UTR 0.44 TCGA-52-7810-01 1 32829291 32829291 G T TSSK3 Missense_Mutation p.D81Y 0.23 deleterious(0.03) probably_damaging(0.936) TCGA-52-7810-01 1 33236663 33236663 C T KIAA1522 Missense_Mutation p.S628F 0.41 deleterious(0) unknown(0) TCGA-52-7810-01 1 34066553 34066553 C G CSMD2 Missense_Mutation p.K2258N 0.35 tolerated(0.2) benign(0.02) TCGA-52-7810-01 1 35579180 35579180 A T ZMYM1 Missense_Mutation p.K583N 0.50 deleterious(0) probably_damaging(1) TCGA-52-7810-01 1 37941410 37941410 C T ZC3H12A Nonsense_Mutation p.Q105* 0.16 TCGA-52-7810-01 1 40703673 40703673 C T RLF Missense_Mutation p.S1100L 0.39 tolerated(0.3) benign(0.094) TCGA-52-7810-01 1 40703702 40703702 C G RLF Missense_Mutation p.Q1110E 0.33 tolerated(0.38) benign(0.001) TCGA-52-7810-01 1 44035424 44035424 C T PTPRF Silent p.N181N 0.33 TCGA-52-7810-01 1 45479655 45479655 G C UROD Missense_Mutation p.Q183H 0.32 deleterious(0) possibly_damaging(0.791) TCGA-52-7810-01 1 53516448 53516448 G C SCP2 3'UTR 0.28 TCGA-52-7810-01 1 70339243 70339243 C A LRRC7 Intron 0.30 TCGA-52-7810-01 1 70705151 70705151 A G SRSF11 Missense_Mutation p.R250G 0.35 tolerated(0.12) unknown(0) TCGA-52-7810-01 1 79107578 79107578 C T IFI44L 3'UTR 0.34 TCGA-52-7810-01 1 92262981 92262981 G T TGFBR3 Missense_Mutation p.H37N 0.29 deleterious(0) probably_damaging(0.985) TCGA-52-7810-01 1 99422163 99422163 A T LPPR5 Splice_Site p.X124_splice 0.40 TCGA-52-7810-01 20 25481589 25481589 A C NINL Missense_Mutation p.S307A 0.23 tolerated(0.44) benign(0.015) TCGA-52-7810-01 20 32848259 32848259 G C ASIP Missense_Mutation p.E27Q 0.20 deleterious(0) benign(0.188) TCGA-52-7810-01 20 33735035 33735035 G T EDEM2 Silent p.L9L 0.44 TCGA-52-7810-01 20 37005406 37005406 C A LBP 3'UTR 0.10 TCGA-52-7810-01 20 3736209 3736209 G C C20orf27 Missense_Mutation p.L95V 0.29 tolerated(0.15) benign(0.014) TCGA-52-7810-01 20 43882359 43882359 A T SLPI Missense_Mutation p.V34D 0.38 tolerated(0.21) benign(0.012) TCGA-52-7810-01 20 44036954 44036954 G C DBNDD2 Missense_Mutation p.K51N 0.22 deleterious_low_confidence(0) benign(0.008) TCGA-52-7810-01 20 49458357 49458357 C T BCAS4 Nonsense_Mutation p.Q137* 0.66 TCGA-52-7810-01 20 5090009 5090009 G C TMEM230 Missense_Mutation p.S86C 0.47 deleterious(0.01) probably_damaging(0.935) TCGA-52-7810-01 20 61512218 61512218 G C DIDO1 Nonsense_Mutation p.S1697* 0.49 TCGA-52-7810-01 21 10862654 10862654 G T IGHV1OR21-1 Silent p.V11V 0.13 TCGA-52-7810-01 21 31988776 31988776 G T KRTAP20-1 Translation_Start_Site p.M1? 0.44 unknown(0) TCGA-52-7810-01 21 37537147 37537147 C G DOPEY2 Missense_Mutation p.S39C 0.19 deleterious(0) probably_damaging(0.992) TCGA-52-7810-01 21 39755483 39755483 T C ERG Missense_Mutation p.M435V 0.49 tolerated(0.93) benign(0.001) TCGA-52-7810-01 21 43277363 43277363 G T PRDM15 Silent p.L435L 0.46 TCGA-52-7810-01 21 47557192 47557192 G A FTCD Silent p.I500I 0.58 TCGA-52-7810-01 22 18389636 18389636 G A MICAL3 5'UTR 0.29 TCGA-52-7810-01 22 20131120 20131120 C G ZDHHC8 Missense_Mutation p.P656R 0.20 tolerated_low_confidence(0.64) probably_damaging(1) TCGA-52-7810-01 22 22677089 22677089 C G IGLV1-51 Missense_Mutation p.I39M 0.22 deleterious(0.02) probably_damaging(0.984) TCGA-52-7810-01 22 23503174 23503174 G A RAB36 Missense_Mutation p.G309E 0.24 deleterious(0) probably_damaging(0.952) TCGA-52-7810-01 22 30951182 30951182 T C GAL3ST1 Missense_Mutation p.I344V 0.56 tolerated(0.26) benign(0.042) TCGA-52-7810-01 22 30977004 30977004 C G PES1 Missense_Mutation p.D303H 0.28 deleterious(0) possibly_damaging(0.839) TCGA-52-7810-01 22 32894433 32894433 G T FBXO7 Missense_Mutation p.L495F 0.17 tolerated(0.06) benign(0.03) TCGA-52-7810-01 22 37272090 37272090 G T NCF4 Missense_Mutation p.K341N 0.13 deleterious_low_confidence(0) benign(0.403) TCGA-52-7810-01 22 40140121 40140121 C T ENTHD1 Missense_Mutation p.D463N 0.11 tolerated(0.12) benign(0.015) TCGA-52-7810-01 22 40415199 40415199 A G FAM83F Missense_Mutation p.T173A 0.18 deleterious(0) probably_damaging(0.996) TCGA-52-7810-01 22 42967150 42967150 C G SERHL2 Missense_Mutation p.I224M 0.20 tolerated(0.06) benign(0.026) TCGA-52-7810-01 22 43471545 43471545 C G TTLL1 Silent p.L16L 0.18 TCGA-52-7810-01 22 50718125 50718125 C T PLXNB2 Silent p.Q1441Q 0.51 TCGA-52-7810-01 22 50719348 50719348 G A PLXNB2 Missense_Mutation p.P1273L 0.28 deleterious(0) probably_damaging(1) TCGA-52-7810-01 2 103318947 103318947 C G SLC9A2 Missense_Mutation p.Q611E 0.32 deleterious(0.02) benign(0.123) TCGA-52-7810-01 2 11300664 11300664 C T PQLC3 Silent p.L72L 0.29 TCGA-52-7810-01 2 125192073 125192073 C A CNTNAP5 Missense_Mutation p.A181D 0.29 deleterious(0.01) benign(0.288) TCGA-52-7810-01 2 128339977 128339977 C T MYO7B Silent p.I433I 0.45 TCGA-52-7810-01 2 132010596 132010596 G T POTEE Nonsense_Mutation p.G568* 0.30 TCGA-52-7810-01 2 133542098 133542098 C G NCKAP5 Missense_Mutation p.R762S 0.19 deleterious(0) benign(0.407) TCGA-52-7810-01 2 158974367 158974367 T C UPP2 Missense_Mutation p.M181T 0.33 deleterious(0) probably_damaging(0.925) TCGA-52-7810-01 2 166245169 166245169 A G SCN2A Missense_Mutation p.Y1618C 0.36 deleterious(0) probably_damaging(0.978) TCGA-52-7810-01 2 166872215 166872215 G A SCN1A Missense_Mutation p.S1151L 0.29 tolerated(0.14) probably_damaging(0.97) TCGA-52-7810-01 2 179440153 179440153 A T TTN Missense_Mutation p.I23569N 0.33 TCGA-52-7810-01 2 179455712 179455712 C G TTN Missense_Mutation p.R20247T 0.30 TCGA-52-7810-01 2 179456938 179456938 C G TTN Missense_Mutation p.W19898S 0.50 TCGA-52-7810-01 2 179475081 179475081 C G TTN Missense_Mutation p.D17058H 0.25 TCGA-52-7810-01 2 179516201 179516201 G T TTN Missense_Mutation p.P13176T 0.33 TCGA-52-7810-01 2 179576918 179576918 C A TTN Silent p.P9213P 0.38 TCGA-52-7810-01 2 179579293 179579293 T C TTN Silent p.P8736P 0.27 TCGA-52-7810-01 2 179615412 179615412 C G TTN Intron 0.25 TCGA-52-7810-01 2 182400366 182400366 G A ITGA4 3'UTR 0.47 TCGA-52-7810-01 2 185801680 185801680 A G ZNF804A Silent p.K519K 0.38 TCGA-52-7810-01 2 185802563 185802563 C A ZNF804A Silent p.R814R 0.28 TCGA-52-7810-01 2 191064754 191064754 T A C2orf88 Silent p.T56T 0.30 TCGA-52-7810-01 2 191524715 191524715 T G NAB1 Silent p.L271L 0.27 TCGA-52-7810-01 2 196729327 196729327 G A DNAH7 Missense_Mutation p.T2351I 0.25 deleterious(0) probably_damaging(0.994) TCGA-52-7810-01 2 201355223 201355223 G C KCTD18 Nonsense_Mutation p.S294* 0.29 TCGA-52-7810-01 2 202207134 202207134 G A ALS2CR12 Silent p.L161L 0.25 TCGA-52-7810-01 2 206590669 206590669 T C NRP2 Missense_Mutation p.S285P 0.55 deleterious(0) probably_damaging(0.994) TCGA-52-7810-01 2 211542688 211542688 C T CPS1 Silent p.Y1500Y 0.40 TCGA-52-7810-01 2 21234788 21234788 C A APOB Missense_Mutation p.G1651V 0.29 possibly_damaging(0.861) TCGA-52-7810-01 2 234079230 234079230 A T INPP5D Missense_Mutation p.Q615L 0.48 deleterious(0.03) possibly_damaging(0.535) TCGA-52-7810-01 2 234079231 234079231 G A INPP5D Silent p.Q615Q 0.50 TCGA-52-7810-01 2 25387608 25387608 G - POMC Frame_Shift_Del p.L12Cfs*59 0.24 TCGA-52-7810-01 2 29274833 29274833 C A FAM179A Missense_Mutation p.H978Q 0.21 tolerated(0.31) benign(0.01) TCGA-52-7810-01 2 30966356 30966356 G A CAPN13 Silent p.T446T 0.34 TCGA-52-7810-01 2 32640519 32640519 G A BIRC6 Silent p.L720L 0.35 TCGA-52-7810-01 2 32740719 32740719 C A BIRC6 Missense_Mutation p.S3744Y 0.27 benign(0.417) TCGA-52-7810-01 2 32897410 32897410 G C TTC27 Silent p.P337P 0.40 TCGA-52-7810-01 2 37241004 37241004 C A HEATR5B Missense_Mutation p.V1422F 0.25 deleterious(0.01) possibly_damaging(0.82) TCGA-52-7810-01 2 40366731 40366731 C A SLC8A1 Missense_Mutation p.W785C 0.23 deleterious(0) probably_damaging(1) TCGA-52-7810-01 2 44078802 44078802 C A ABCG8 Silent p.I134I 0.25 TCGA-52-7810-01 2 62096610 62096610 C G CCT4 Missense_Mutation p.E524Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-52-7810-01 2 63605523 63605523 G C WDPCP Silent p.L582L 0.26 TCGA-52-7810-01 2 89309948 89309948 T C IGKV1-9 Missense_Mutation p.M3V 0.37 deleterious_low_confidence(0.03) benign(0.043) TCGA-52-7810-01 3 101062532 101062532 G C SENP7 Missense_Mutation p.Q702E 0.45 tolerated(0.07) probably_damaging(0.995) TCGA-52-7810-01 3 10132019 10132019 G C FANCD2 Missense_Mutation p.E1243Q 0.46 tolerated(0.06) probably_damaging(0.956) TCGA-52-7810-01 3 114058268 114058268 T C ZBTB20 Missense_Mutation p.K604E 0.47 deleterious(0) benign(0.376) TCGA-52-7810-01 3 121396153 121396153 G C GOLGB1 Silent p.L3006L 0.33 TCGA-52-7810-01 3 125032263 125032263 C A ZNF148 Missense_Mutation p.M74I 0.33 tolerated(0.25) benign(0.022) TCGA-52-7810-01 3 12650737 12650737 T G RAF1 Missense_Mutation p.N140H 0.79 deleterious(0) probably_damaging(0.992) TCGA-52-7810-01 3 128631642 128631642 A G ACAD9 3'UTR 0.26 TCGA-52-7810-01 3 130187764 130187764 G A COL6A5 Missense_Mutation p.E2306K 0.14 deleterious(0.01) possibly_damaging(0.691) TCGA-52-7810-01 3 130187899 130187899 G A COL6A5 Missense_Mutation p.E2351K 0.14 tolerated(0.18) benign(0.313) TCGA-52-7810-01 3 130737513 130737513 C T ASTE1 Silent p.V450V 0.27 TCGA-52-7810-01 3 133670158 133670158 C T SLCO2A1 Missense_Mutation p.R252Q 0.18 deleterious(0.04) possibly_damaging(0.499) TCGA-52-7810-01 3 137483721 137483721 A T SOX14 Missense_Mutation p.K32M 0.06 deleterious(0) probably_damaging(1) TCGA-52-7810-01 3 140419783 140419783 G C TRIM42 Missense_Mutation p.K713N 0.22 deleterious(0.01) probably_damaging(0.917) TCGA-52-7810-01 3 148586712 148586712 G A CPA3 Nonsense_Mutation p.W52* 0.25 TCGA-52-7810-01 3 150874031 150874031 G A MED12L Missense_Mutation p.D214N 0.22 tolerated(0.64) benign(0.002) TCGA-52-7810-01 3 164750357 164750357 G C SI Missense_Mutation p.Q897E 0.16 tolerated(0.75) benign(0.024) TCGA-52-7810-01 3 167016208 167016208 T C ZBBX Silent p.T588T 0.20 TCGA-52-7810-01 3 168845828 168845828 C T MECOM Missense_Mutation p.E88K 0.16 deleterious(0.03) probably_damaging(0.997) TCGA-52-7810-01 3 170819380 170819380 C G TNIK Missense_Mutation p.E817Q 0.18 deleterious(0.03) probably_damaging(0.989) TCGA-52-7810-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.27 deleterious(0.02) probably_damaging(0.959) TCGA-52-7810-01 3 179525574 179525574 C T PEX5L Missense_Mutation p.D522N 0.15 tolerated(0.68) benign(0.268) TCGA-52-7810-01 3 182735089 182735089 C G MCCC1 Missense_Mutation p.D672H 0.17 deleterious(0) probably_damaging(0.997) TCGA-52-7810-01 3 185165632 185165632 G A MAP3K13 Missense_Mutation p.E303K 0.24 deleterious(0.01) benign(0.264) TCGA-52-7810-01 3 186943132 186943132 G A MASP1 Missense_Mutation p.P574L 0.50 deleterious(0) probably_damaging(0.996) TCGA-52-7810-01 3 189604244 189604244 A G TP63 Missense_Mutation p.S471G 0.14 tolerated(0.88) benign(0.027) TCGA-52-7810-01 3 192516720 192516720 G A MB21D2 Nonsense_Mutation p.Q311* 0.32 TCGA-52-7810-01 3 195610157 195610157 C T TNK2 Silent p.L223L 0.24 TCGA-52-7810-01 3 196387264 196387264 C T NRROS Silent p.F250F 0.26 TCGA-52-7810-01 3 43389119 43389119 G C SNRK Missense_Mutation p.K456N 0.50 tolerated(0.16) benign(0.047) TCGA-52-7810-01 3 4747949 4747949 T C ITPR1 Missense_Mutation p.W1571R 0.73 deleterious(0.01) benign(0.406) TCGA-52-7810-01 3 47958343 47958343 T C MAP4 Missense_Mutation p.E325G 0.57 tolerated(0.06) benign(0.063) TCGA-52-7810-01 3 51273781 51273781 G A DOCK3 Silent p.L641L 0.56 TCGA-52-7810-01 3 62522170 62522170 C T CADPS Missense_Mutation p.V685I 0.07 tolerated(0.06) benign(0.097) TCGA-52-7810-01 3 97806672 97806672 C A OR5AC2 Missense_Mutation p.S219Y 0.33 deleterious(0) probably_damaging(1) TCGA-52-7810-01 3 97851713 97851713 C T OR5H1 Missense_Mutation p.P58S 0.34 deleterious(0.01) possibly_damaging(0.458) TCGA-52-7810-01 3 97983598 97983598 G C OR5H6 Missense_Mutation p.C157S 0.27 deleterious(0.03) probably_damaging(1) TCGA-52-7810-01 4 126367574 126367574 G T FAT4 Silent p.A2440A 0.45 TCGA-52-7810-01 4 128816156 128816156 G A PLK4 Missense_Mutation p.D871N 0.62 tolerated(0.85) benign(0.001) TCGA-52-7810-01 4 144135568 144135568 C G USP38 Missense_Mutation p.F813L 0.36 tolerated(0.65) benign(0.005) TCGA-52-7810-01 4 155670379 155670379 T G LRAT 3'UTR 0.31 TCGA-52-7810-01 4 174450020 174450020 G T HAND2 Missense_Mutation p.L141M 0.50 deleterious(0) probably_damaging(0.998) TCGA-52-7810-01 4 178231233 178231233 C G NEIL3 Silent p.L42L 0.50 TCGA-52-7810-01 4 437833 437833 T C ZNF721 Silent p.E141E 0.31 TCGA-52-7810-01 4 48487117 48487117 C A SLC10A4 Missense_Mutation p.F253L 0.37 tolerated(0.37) benign(0.007) TCGA-52-7810-01 4 48611079 48611079 G C FRYL Nonsense_Mutation p.S166* 0.32 TCGA-52-7810-01 4 52752766 52752766 G C DCUN1D4 Missense_Mutation p.E126Q 0.32 tolerated(0.05) probably_damaging(0.986) TCGA-52-7810-01 4 54362531 54362531 G C LNX1 Missense_Mutation p.H337D 0.20 deleterious(0) probably_damaging(0.999) TCGA-52-7810-01 4 6610897 6610897 G A MAN2B2 Silent p.V626V 0.70 TCGA-52-7810-01 4 66217150 66217150 G T EPHA5 Missense_Mutation p.S822Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-52-7810-01 4 66280013 66280013 G T EPHA5 Missense_Mutation p.T559N 0.27 deleterious(0.01) probably_damaging(0.977) TCGA-52-7810-01 4 71200710 71200710 G A CABS1 5'UTR 0.50 TCGA-52-7810-01 4 74853890 74853890 A G PPBP 5'UTR 0.33 TCGA-52-7810-01 4 83857259 83857259 T A LIN54 Nonsense_Mutation p.R574* 0.37 TCGA-52-7810-01 4 84227387 84227387 T C HPSE Missense_Mutation p.H392R 0.29 deleterious(0.03) benign(0.285) TCGA-52-7810-01 4 88977361 88977361 T C PKD2 Silent p.L614L 0.35 TCGA-52-7810-01 4 90816568 90816568 C G MMRN1 Nonsense_Mutation p.S149* 0.19 TCGA-52-7810-01 5 10264900 10264900 A G CCT5 3'UTR 0.45 TCGA-52-7810-01 5 11346717 11346717 G C CTNND2 Missense_Mutation p.D465E 0.35 tolerated(0.1) possibly_damaging(0.585) TCGA-52-7810-01 5 114499342 114499342 T C TRIM36 Silent p.V57V 0.57 TCGA-52-7810-01 5 133638354 133638354 C A CDKL3 Missense_Mutation p.R549M 0.62 deleterious(0.03) possibly_damaging(0.907) TCGA-52-7810-01 5 140482199 140482199 G A PCDHB3 Missense_Mutation p.A656T 0.52 deleterious_low_confidence(0.01) benign(0.105) TCGA-52-7810-01 5 140559465 140559465 G T PCDHB8 Missense_Mutation p.G617V 0.45 deleterious_low_confidence(0) benign(0.262) TCGA-52-7810-01 5 140603373 140603373 C - PCDHB14 Frame_Shift_Del p.E100Sfs*27 0.31 TCGA-52-7810-01 5 140605314 140605314 C T PCDHB14 Missense_Mutation p.S746F 0.44 deleterious_low_confidence(0) possibly_damaging(0.907) TCGA-52-7810-01 5 140790051 140790051 C T PCDHGB6 Missense_Mutation p.T761I 0.62 tolerated(0.18) benign(0.028) TCGA-52-7810-01 5 140801386 140801386 G C PCDHGA11 Missense_Mutation p.E198Q 0.39 tolerated_low_confidence(0.14) benign(0.363) TCGA-52-7810-01 5 156589673 156589673 T A FAM71B Missense_Mutation p.S535C 0.46 deleterious(0.05) possibly_damaging(0.635) TCGA-52-7810-01 5 157078243 157078243 C A SOX30 Nonsense_Mutation p.E282* 0.53 TCGA-52-7810-01 5 176730389 176730389 G A RAB24 5'UTR 0.75 TCGA-52-7810-01 5 446323 446323 G A EXOC3 Translation_Start_Site p.M1? 0.17 deleterious_low_confidence(0.02) benign(0.38) TCGA-52-7810-01 5 45303710 45303710 A T HCN1 Missense_Mutation p.Y537N 0.57 deleterious(0) probably_damaging(1) TCGA-52-7810-01 5 45303773 45303773 G T HCN1 Missense_Mutation p.Q516K 0.66 deleterious(0.02) probably_damaging(0.965) TCGA-52-7810-01 5 67593444 67593444 G C PIK3R1 3'UTR 0.50 TCGA-52-7810-01 5 79034928 79034928 C T CMYA5 Missense_Mutation p.P3447L 0.62 benign(0.056) TCGA-52-7810-01 5 87564571 87564571 C G TMEM161B 5'UTR 0.42 TCGA-52-7810-01 5 88100541 88100541 C T MEF2C Silent p.A44A 0.56 TCGA-52-7810-01 5 94842651 94842651 C A TTC37 Missense_Mutation p.G1027C 0.50 deleterious(0) probably_damaging(0.987) TCGA-52-7810-01 6 105609505 105609505 G T POPDC3 Missense_Mutation p.H94N 0.31 deleterious(0) benign(0.263) TCGA-52-7810-01 6 123101527 123101527 C A FABP7 Silent p.L55L 0.19 TCGA-52-7810-01 6 127898466 127898466 G T C6orf58 Nonsense_Mutation p.E46* 0.31 TCGA-52-7810-01 6 129786344 129786344 C A LAMA2 Missense_Mutation p.L2404M 0.29 deleterious(0) probably_damaging(1) TCGA-52-7810-01 6 146755648 146755648 G T GRM1 Nonsense_Mutation p.E1101* 0.24 TCGA-52-7810-01 6 152637988 152637988 T C SYNE1 Missense_Mutation p.H5569R 0.34 possibly_damaging(0.556) TCGA-52-7810-01 6 168226902 168226902 G C MLLT4 5'Flank 0.36 TCGA-52-7810-01 6 17632937 17632937 G C NUP153 Missense_Mutation p.S868C 0.64 tolerated(0.09) benign(0.013) TCGA-52-7810-01 6 27925810 27925810 G T OR2B6 Silent p.S264S 0.52 TCGA-52-7810-01 6 28093411 28093411 G C ZSCAN16 Missense_Mutation p.E64Q 0.61 tolerated(0.05) possibly_damaging(0.54) TCGA-52-7810-01 6 29365169 29365169 C A OR12D2 Missense_Mutation p.S231R 0.55 tolerated(0.34) benign(0.008) TCGA-52-7810-01 6 29796050 29796050 G A HLA-G Missense_Mutation p.M100I 0.61 deleterious_low_confidence(0.03) benign(0.009) TCGA-52-7810-01 6 30697932 30697932 G A FLOT1 Missense_Mutation p.S374L 0.48 deleterious(0.01) benign(0.015) TCGA-52-7810-01 6 31118822 31118822 C G CCHCR1 Silent p.L293L 0.67 TCGA-52-7810-01 6 31934521 31934521 C T SKIV2L Silent p.L746L 0.60 TCGA-52-7810-01 6 33653581 33653581 G C ITPR3 Missense_Mutation p.E1882Q 0.63 deleterious(0.01) probably_damaging(0.984) TCGA-52-7810-01 6 34558295 34558295 G C C6orf106 3'UTR 0.50 TCGA-52-7810-01 6 43192130 43192130 G C CUL9 Missense_Mutation p.E2501Q 0.36 deleterious_low_confidence(0.02) benign(0.084) TCGA-52-7810-01 6 56883276 56883276 G A BEND6 Missense_Mutation p.G257E 0.16 tolerated(0.11) probably_damaging(0.989) TCGA-52-7810-01 6 70049262 70049262 C G BAI3 Missense_Mutation p.L1109V 0.23 deleterious(0.01) possibly_damaging(0.793) TCGA-52-7810-01 6 73951255 73951255 C T KHDC1 Silent p.P237P 0.28 TCGA-52-7810-01 6 79655205 79655205 T C PHIP Missense_Mutation p.N1547S 0.38 tolerated_low_confidence(0.3) probably_damaging(0.97) TCGA-52-7810-01 6 96974222 96974222 G A UFL1 Missense_Mutation p.E126K 0.25 deleterious(0) probably_damaging(0.981) TCGA-52-7810-01 7 100678332 100678332 C G MUC17 Nonsense_Mutation p.S1212* 0.37 TCGA-52-7810-01 7 107875024 107875024 C T NRCAM Intron 0.28 TCGA-52-7810-01 7 11468640 11468640 A G THSD7A Silent p.S1059S 0.59 TCGA-52-7810-01 7 11485917 11485917 G A THSD7A Silent p.S945S 0.63 TCGA-52-7810-01 7 117175440 117175440 C G CFTR Missense_Mutation p.L240V 0.45 tolerated(0.1) benign(0.045) TCGA-52-7810-01 7 121726085 121726085 C A AASS Missense_Mutation p.R722L 0.22 deleterious(0) probably_damaging(1) TCGA-52-7810-01 7 122763232 122763232 C T SLC13A1 Nonsense_Mutation p.W433* 0.19 TCGA-52-7810-01 7 126883013 126883013 T A GRM8 Silent p.A82A 0.36 TCGA-52-7810-01 7 128040499 128040499 G C IMPDH1 Missense_Mutation p.S225C 0.17 tolerated(0.23) benign(0.02) TCGA-52-7810-01 7 142499026 142499026 C T TRBC2 Silent p.Y101Y 0.23 TCGA-52-7810-01 7 143013459 143013459 C T CLCN1 Missense_Mutation p.P52S 0.14 tolerated_low_confidence(0.43) benign(0.002) TCGA-52-7810-01 7 143140854 143140854 G T TAS2R60 Silent p.L103L 0.40 TCGA-52-7810-01 7 149462036 149462036 C G ZNF467 Missense_Mutation p.V519L 0.11 tolerated(0.32) possibly_damaging(0.478) TCGA-52-7810-01 7 158457287 158457287 C G NCAPG2 Missense_Mutation p.Q545H 0.33 deleterious(0.01) benign(0.126) TCGA-52-7810-01 7 21521711 21521711 G A SP4 Missense_Mutation p.E693K 0.24 deleterious(0) probably_damaging(0.998) TCGA-52-7810-01 7 27196280 27196280 G C HOXA7 5'UTR 0.33 TCGA-52-7810-01 7 4050656 4050656 G A SDK1 Silent p.V730V 0.66 TCGA-52-7810-01 7 48311928 48311928 A G ABCA13 Missense_Mutation p.I889V 0.37 benign(0.012) TCGA-52-7810-01 7 48411820 48411820 A C ABCA13 Missense_Mutation p.E3620A 0.19 probably_damaging(1) TCGA-52-7810-01 7 56125694 56125694 G C CCT6A Missense_Mutation p.R208T 0.52 deleterious(0) possibly_damaging(0.485) TCGA-52-7810-01 7 73010585 73010585 G C MLXIPL Missense_Mutation p.I652M 0.19 tolerated(0.1) probably_damaging(0.995) TCGA-52-7810-01 7 73279335 73279335 C A WBSCR28 Silent p.R29R 0.45 TCGA-52-7810-01 7 95221352 95221352 G C PDK4 Silent p.L214L 0.24 TCGA-52-7810-01 7 99170935 99170935 C T ZNF655 Missense_Mutation p.H437Y 0.32 deleterious(0.01) benign(0.291) TCGA-52-7810-01 7 99171010 99171010 C G ZNF655 Missense_Mutation p.H462D 0.35 deleterious(0.01) benign(0.402) TCGA-52-7810-01 7 99171241 99171241 C T ZNF655 3'UTR 0.29 TCGA-52-7810-01 7 99668855 99668855 G A ZNF3 Missense_Mutation p.H418Y 0.24 deleterious(0) probably_damaging(0.983) TCGA-52-7810-01 7 99755381 99755381 A T C7orf43 Missense_Mutation p.V171E 0.27 deleterious(0.01) possibly_damaging(0.455) TCGA-52-7810-01 8 100994248 100994248 G A RGS22 Nonsense_Mutation p.Q1093* 0.30 TCGA-52-7810-01 8 109796404 109796404 C A TMEM74 3'UTR 0.46 TCGA-52-7810-01 8 116631399 116631399 G C TRPS1 Missense_Mutation p.S309C 0.11 deleterious_low_confidence(0) possibly_damaging(0.757) TCGA-52-7810-01 8 13259110 13259110 C G DLC1 Missense_Mutation p.D348H 0.58 deleterious_low_confidence(0.01) possibly_damaging(0.681) TCGA-52-7810-01 8 139163899 139163899 G T FAM135B Missense_Mutation p.T940K 0.69 tolerated(0.76) benign(0.009) TCGA-52-7810-01 8 141542085 141542085 G C AGO2 3'UTR 0.17 TCGA-52-7810-01 8 145740348 145740348 G A RECQL4 Missense_Mutation p.S531F 0.12 deleterious(0) probably_damaging(0.998) TCGA-52-7810-01 8 146003480 146003480 G A ZNF34 Nonsense_Mutation p.Q56* 0.13 TCGA-52-7810-01 8 19682446 19682446 C G INTS10 Missense_Mutation p.F323L 0.55 tolerated(0.09) benign(0.022) TCGA-52-7810-01 8 22009496 22009496 G C LGI3 Nonsense_Mutation p.S171* 0.50 TCGA-52-7810-01 8 23012429 23012429 G A TNFRSF10D Nonsense_Mutation p.Q72* 0.62 TCGA-52-7810-01 8 37917466 37917466 C T EIF4EBP1 3'UTR 0.22 TCGA-52-7810-01 8 38852950 38852951 - C TM2D2 Intron 0.26 TCGA-52-7810-01 8 41561610 41561610 G T ANK1 Missense_Mutation p.D781E 0.38 tolerated(0.14) possibly_damaging(0.81) TCGA-52-7810-01 8 43171048 43171048 C A POTEA RNA 0.32 TCGA-52-7810-01 8 54906245 54906245 A T TCEA1 Silent p.P101P 0.27 TCGA-52-7810-01 8 56985805 56985805 A T RPS20 Silent p.T68T 0.05 TCGA-52-7810-01 8 57079360 57079360 C A PLAG1 Missense_Mutation p.M315I 0.26 tolerated(0.14) benign(0.002) TCGA-52-7810-01 8 57079364 57079364 C T PLAG1 Missense_Mutation p.G314E 0.25 tolerated(0.23) probably_damaging(0.994) TCGA-52-7810-01 8 87560646 87560647 - T CPNE3 Frame_Shift_Ins p.Q334Sfs*4 0.25 TCGA-52-7810-01 9 100245541 100245541 G C TDRD7 Silent p.L941L 0.47 TCGA-52-7810-01 9 103340618 103340618 A G MURC Missense_Mutation p.I65V 0.59 tolerated(1) benign(0.019) TCGA-52-7810-01 9 104357165 104357165 G T PPP3R2 Silent p.S16S 0.45 TCGA-52-7810-01 9 107550820 107550820 G C ABCA1 Missense_Mutation p.Q1986E 0.34 deleterious(0) benign(0.34) TCGA-52-7810-01 9 107578564 107578564 T C ABCA1 Missense_Mutation p.I1200V 0.05 tolerated(0.09) benign(0.002) TCGA-52-7810-01 9 109692876 109692876 G C ZNF462 Missense_Mutation p.C1973S 0.27 probably_damaging(0.989) TCGA-52-7810-01 9 111903801 111903801 A G FRRS1L Silent p.N228N 0.60 TCGA-52-7810-01 9 113166766 113166766 C A SVEP1 Missense_Mutation p.W3169C 0.20 probably_damaging(1) TCGA-52-7810-01 9 129642506 129642506 G T ZBTB34 Silent p.V272V 0.41 TCGA-52-7810-01 9 136208604 136208604 G C MED22 Intron 0.44 TCGA-52-7810-01 9 137623481 137623481 C T COL5A1 Missense_Mutation p.P435L 0.10 probably_damaging(0.999) TCGA-52-7810-01 9 140729270 140729270 C T EHMT1 Silent p.F1254F 0.27 TCGA-52-7810-01 9 19352172 19352172 G A DENND4C Missense_Mutation p.A1484T 0.51 deleterious(0.05) benign(0.134) TCGA-52-7810-01 9 35685291 35685291 C T TPM2 Missense_Mutation p.E180K 0.35 deleterious(0.03) benign(0.272) TCGA-52-7810-01 9 5090472 5090472 G T JAK2 Nonsense_Mutation p.E930* 0.47 TCGA-52-7810-01 9 73151570 73151570 C T TRPM3 Missense_Mutation p.D1475N 0.31 tolerated_low_confidence(0.24) benign(0.234) TCGA-52-7810-01 9 90301613 90301613 A T DAPK1 Missense_Mutation p.Q791L 0.58 tolerated(0.07) benign(0.122) TCGA-52-7810-01 X 100241793 100241793 A C ARL13A Missense_Mutation p.N130T 0.60 deleterious(0) probably_damaging(0.982) TCGA-52-7810-01 X 100509851 100509851 G T DRP2 Silent p.P706P 0.57 TCGA-52-7810-01 X 106219841 106219841 T A MORC4 Missense_Mutation p.Q377L 0.49 deleterious(0) probably_damaging(0.998) TCGA-52-7810-01 X 107084492 107084492 G A MID2 Silent p.E199E 0.31 TCGA-52-7810-01 X 111090614 111090614 C T TRPC5 Silent p.L476L 0.53 TCGA-52-7810-01 X 11187680 11187680 G T ARHGAP6 Missense_Mutation p.T585K 0.26 tolerated(0.08) benign(0.388) TCGA-52-7810-01 X 130407695 130407695 A T IGSF1 3'UTR 0.43 TCGA-52-7810-01 X 13337165 13337165 G T ATXN3L Missense_Mutation p.Q297K 0.38 tolerated_low_confidence(0.14) benign(0.013) TCGA-52-7810-01 X 135498731 135498731 G T GPR112 3'UTR 0.75 TCGA-52-7810-01 X 138714522 138714522 C G MCF2 Missense_Mutation p.S108T 0.40 tolerated(0.1) possibly_damaging(0.852) TCGA-52-7810-01 X 147026500 147026500 G C FMR1 Missense_Mutation p.R528T 0.27 tolerated(0.16) possibly_damaging(0.665) TCGA-52-7810-01 X 15549476 15549476 G C BMX Missense_Mutation p.R322T 0.29 deleterious(0) probably_damaging(0.947) TCGA-52-7810-01 X 18748384 18748384 C G PPEF1 Missense_Mutation p.I44M 0.32 deleterious(0) probably_damaging(0.966) TCGA-52-7810-01 X 19968908 19968908 C A CXorf23 Missense_Mutation p.D570Y 0.30 deleterious(0) probably_damaging(0.998) TCGA-52-7810-01 X 21609167 21609167 G A CNKSR2 Missense_Mutation p.R562Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-52-7810-01 X 21674162 21674162 C T KLHL34 Missense_Mutation p.R582Q 0.45 tolerated(0.78) benign(0.001) TCGA-52-7810-01 X 27765025 27765025 G C DCAF8L2 Missense_Mutation p.E5Q 0.35 tolerated_low_confidence(0.22) possibly_damaging(0.802) TCGA-52-7810-01 X 27765890 27765890 G T DCAF8L2 Missense_Mutation p.R293L 0.19 tolerated(0.1) benign(0.384) TCGA-52-7810-01 X 29935605 29935605 G A IL1RAPL1 Missense_Mutation p.R268K 0.55 tolerated(1) benign(0.007) TCGA-52-7810-01 X 31089687 31089687 G C FTHL17 Silent p.P128P 0.30 TCGA-52-7810-01 X 35820535 35820535 C G MAGEB16 Silent p.A74A 0.38 TCGA-52-7810-01 X 35820908 35820908 G T MAGEB16 Missense_Mutation p.G199C 0.20 deleterious(0) probably_damaging(0.994) TCGA-52-7810-01 X 38144942 38144942 G A RPGR Nonsense_Mutation p.Q1104* 0.27 TCGA-52-7810-01 X 39921460 39921460 G A BCOR Missense_Mutation p.R1454W 0.47 deleterious(0) probably_damaging(0.991) TCGA-52-7810-01 X 44703735 44703735 G T DUSP21 Silent p.A119A 0.27 TCGA-52-7810-01 X 46940535 46940535 C T RGN 5'UTR 0.29 TCGA-52-7810-01 X 48417714 48417714 G A TBC1D25 Missense_Mutation p.V229M 0.27 deleterious(0) probably_damaging(0.997) TCGA-52-7810-01 X 48543937 48543937 C A WAS Missense_Mutation p.A92D 0.29 tolerated(0.57) benign(0.065) TCGA-52-7810-01 X 48772655 48772655 T G PIM2 Silent p.T79T 0.36 TCGA-52-7810-01 X 49021112 49021112 G A MAGIX Silent p.V88V 0.26 TCGA-52-7810-01 X 49034372 49034372 C A PRICKLE3 Nonsense_Mutation p.E309* 0.27 TCGA-52-7810-01 X 49143288 49143289 CG T PPP1R3F Frame_Shift_Del p.E713Kfs*7 0.46 TCGA-52-7810-01 X 53627138 53627138 T A HUWE1 Nonsense_Mutation p.K1035* 0.31 TCGA-52-7810-01 X 54957141 54957141 C A TRO Missense_Mutation p.D1328E 0.29 deleterious_low_confidence(0.02) benign(0.417) TCGA-52-7810-01 X 54959844 54959844 G T PFKFB1 Missense_Mutation p.H470N 0.36 probably_damaging(0.984) TCGA-52-7810-01 X 55185628 55185628 G T FAM104B Missense_Mutation p.N18K 0.31 tolerated(0.1) probably_damaging(0.986) TCGA-52-7810-01 X 69517026 69517026 G T KIF4A Silent p.V138V 0.73 TCGA-52-7810-01 X 69647246 69647246 C A GDPD2 Missense_Mutation p.T290K 0.72 tolerated(0.91) benign(0.022) TCGA-52-7810-01 X 70147846 70147846 C T SLC7A3 Missense_Mutation p.R282H 0.15 tolerated(0.09) benign(0.178) TCGA-52-7810-01 X 70469520 70469520 C T ZMYM3 Missense_Mutation p.E421K 0.21 deleterious(0) probably_damaging(0.996) TCGA-52-7810-01 X 70618455 70618455 G A TAF1 Silent p.R1238R 0.13 TCGA-52-7810-01 X 70838297 70838297 C A CXCR3 5'UTR 0.56 TCGA-52-7810-01 X 73959986 73959986 C A KIAA2022 Missense_Mutation p.R1469L 0.14 deleterious(0) probably_damaging(1) TCGA-52-7810-01 X 75649823 75649823 G C MAGEE1 Missense_Mutation p.Q500H 0.08 tolerated(0.08) probably_damaging(0.957) TCGA-52-7810-01 X 76907610 76907610 C T ATRX Silent p.L1517L 0.43 TCGA-52-7810-01 X 84523302 84523302 G A ZNF711 Missense_Mutation p.D307N 0.81 tolerated(0.53) benign(0.03) TCGA-52-7810-01 X 9000382 9000382 C G FAM9B Missense_Mutation p.G50A 0.26 deleterious(0.01) probably_damaging(0.992) TCGA-52-7810-01 X 9907290 9907290 T G SHROOM2 Missense_Mutation p.Y1399D 0.42 deleterious(0) probably_damaging(0.997) TCGA-52-7810-01 X 99662146 99662146 G C PCDH19 Missense_Mutation p.L484V 0.46 tolerated(0.14) benign(0.309) TCGA-52-7811-01 10 12130995 12130995 G A DHTKD1 Missense_Mutation p.R243H 0.14 tolerated(0.32) benign(0.155) TCGA-52-7811-01 10 135183537 135183537 T C ECHS1 Splice_Site p.X96_splice 0.21 TCGA-52-7811-01 10 16949577 16949577 G A CUBN Silent p.V2545V 0.23 TCGA-52-7811-01 10 18937491 18937491 T C RP11-139J15.7 Silent p.T41T 0.24 TCGA-52-7811-01 10 18963065 18963065 G A ARL5B Splice_Site p.X164_splice 0.17 TCGA-52-7811-01 10 85964305 85964305 T G CDHR1 Missense_Mutation p.V269G 0.25 tolerated(0.36) benign(0.315) TCGA-52-7811-01 10 85992403 85992403 G T LRIT1 Silent p.P384P 0.21 TCGA-52-7811-01 10 85992404 85992404 G T LRIT1 Missense_Mutation p.P384H 0.21 deleterious(0.01) possibly_damaging(0.765) TCGA-52-7811-01 10 97919614 97919614 A T ZNF518A RNA 0.25 TCGA-52-7811-01 10 99330225 99330225 A C UBTD1 Missense_Mutation p.Q210P 0.26 tolerated(0.63) probably_damaging(0.997) TCGA-52-7811-01 11 124748267 124748267 G T ROBO3 Silent p.L1085L 0.14 TCGA-52-7811-01 11 19914047 19914047 A G NAV2 Missense_Mutation p.T303A 0.10 tolerated(0.5) benign(0) TCGA-52-7811-01 11 30033448 30033448 G A KCNA4 Nonsense_Mutation p.Q260* 0.08 TCGA-52-7811-01 11 47330831 47330831 G - MADD Splice_Site p.X1311_splice 0.21 TCGA-52-7811-01 11 47359003 47359003 G T MYBPC3 Nonsense_Mutation p.Y847* 0.11 TCGA-52-7811-01 11 55406505 55406505 A T OR4P4 Missense_Mutation p.R224S 0.18 deleterious(0.01) benign(0.12) TCGA-52-7811-01 11 55944767 55944767 G T OR5J2 Missense_Mutation p.S225I 0.09 tolerated(1) benign(0) TCGA-52-7811-01 11 5906327 5906327 A T OR52E4 Missense_Mutation p.I269F 0.08 deleterious(0.01) possibly_damaging(0.891) TCGA-52-7811-01 11 60201283 60201283 A G MS4A5 Missense_Mutation p.I129V 0.23 tolerated(1) benign(0.002) TCGA-52-7811-01 11 62656021 62656021 G T SLC3A2 Silent p.L584L 0.37 TCGA-52-7811-01 11 67267219 67267219 G A PITPNM1 Silent p.S382S 0.14 TCGA-52-7811-01 11 6789715 6789715 T C OR2AG2 Silent p.G158G 0.18 TCGA-52-7811-01 11 73105763 73105764 - TC RELT Frame_Shift_Ins p.L345Sfs*24 0.17 TCGA-52-7811-01 11 8704754 8704754 C T RPL27A Silent p.S3S 0.07 TCGA-52-7811-01 12 119568593 119568593 C A SRRM4 Missense_Mutation p.P242H 0.29 deleterious_low_confidence(0) possibly_damaging(0.746) TCGA-52-7811-01 12 26568392 26568392 C T ITPR2 Missense_Mutation p.V2384I 0.20 deleterious(0) possibly_damaging(0.685) TCGA-52-7811-01 12 4735677 4735677 T A AKAP3 Missense_Mutation p.E797D 0.22 tolerated(0.77) probably_damaging(0.999) TCGA-52-7811-01 12 53005044 53005044 C G KRT73 Missense_Mutation p.E352Q 0.10 deleterious(0.01) benign(0.391) TCGA-52-7811-01 12 57441543 57441543 C G MYO1A Intron 0.27 TCGA-52-7811-01 12 64879783 64879783 G T TBK1 Silent p.G442G 0.17 TCGA-52-7811-01 12 67696363 67696363 G T CAND1 Nonsense_Mutation p.G421* 0.52 TCGA-52-7811-01 13 101707587 101707587 T A NALCN 3'UTR 0.12 TCGA-52-7811-01 13 29600718 29600718 A C MTUS2 Missense_Mutation p.E638A 0.27 deleterious(0) possibly_damaging(0.783) TCGA-52-7811-01 13 53422447 53422447 G T PCDH8 Missense_Mutation p.P42H 0.17 deleterious(0) benign(0.028) TCGA-52-7811-01 13 53422452 53422452 A T PCDH8 Missense_Mutation p.D40E 0.17 tolerated(0.36) benign(0.028) TCGA-52-7811-01 13 70456542 70456542 A G KLHL1 Missense_Mutation p.V367A 0.15 deleterious(0) possibly_damaging(0.526) TCGA-52-7811-01 14 105478169 105478169 T A CDCA4 Missense_Mutation p.Q33L 0.30 deleterious(0) probably_damaging(0.964) TCGA-52-7811-01 14 106518558 106518558 C T IGHV3-7 Missense_Mutation p.E65K 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.662) TCGA-52-7811-01 14 106805364 106805364 C G IGHV4-31 Missense_Mutation p.E67Q 0.11 tolerated_low_confidence(0.1) benign(0.411) TCGA-52-7811-01 14 22204980 22204980 C A TRAV4 Missense_Mutation p.T15N 0.12 tolerated(0.08) possibly_damaging(0.58) TCGA-52-7811-01 14 23793474 23793474 G A PABPN1 Missense_Mutation p.S286N 0.07 tolerated(0.11) benign(0.013) TCGA-52-7811-01 14 63483653 63483653 T G KCNH5 Silent p.G31G 0.09 TCGA-52-7811-01 14 77895403 77895403 C A VIPAS39 Silent p.V434V 0.27 TCGA-52-7811-01 14 96757170 96757170 C A ATG2B Missense_Mutation p.M1894I 0.32 tolerated(0.2) benign(0) TCGA-52-7811-01 15 79294128 79294128 G T RASGRF1 Missense_Mutation p.S833R 0.08 tolerated(0.24) benign(0.005) TCGA-52-7811-01 15 88679741 88679741 A G NTRK3 Missense_Mutation p.V241A 0.24 tolerated(0.62) benign(0.247) TCGA-52-7811-01 16 15719528 15719528 T C KIAA0430 Missense_Mutation p.I552V 0.13 tolerated(0.74) benign(0.005) TCGA-52-7811-01 16 19067992 19067992 T A TMC7 Missense_Mutation p.F667Y 0.08 deleterious(0.01) probably_damaging(0.969) TCGA-52-7811-01 16 24166101 24166101 A G PRKCB Missense_Mutation p.M388V 0.19 deleterious(0) possibly_damaging(0.552) TCGA-52-7811-01 16 24202419 24202419 C A PRKCB Silent p.T577T 0.19 TCGA-52-7811-01 16 3640750 3640750 C T SLX4 Silent p.R963R 0.14 TCGA-52-7811-01 16 48117656 48117656 C A ABCC12 Silent p.A1350A 0.28 TCGA-52-7811-01 16 51174519 51174519 G T SALL1 Silent p.V538V 0.26 TCGA-52-7811-01 16 57722283 57722283 G C GPR97 Missense_Mutation p.W520C 0.31 deleterious(0) probably_damaging(1) TCGA-52-7811-01 16 75146417 75146417 C T LDHD Missense_Mutation p.R454Q 0.18 deleterious(0.03) benign(0.192) TCGA-52-7811-01 17 10298650 10298650 G A MYH8 Nonsense_Mutation p.Q1588* 0.39 TCGA-52-7811-01 17 10298651 10298651 G T MYH8 Missense_Mutation p.D1587E 0.39 tolerated(1) benign(0.007) TCGA-52-7811-01 17 39780827 39780827 T C KRT17 5'UTR 0.30 TCGA-52-7811-01 17 40738093 40738093 C T FAM134C Silent p.G189G 0.05 TCGA-52-7811-01 17 47041685 47041685 C A GIP Missense_Mutation p.G82W 0.29 deleterious(0.02) probably_damaging(1) TCGA-52-7811-01 17 47041686 47041686 C G GIP Missense_Mutation p.K81N 0.27 deleterious(0) possibly_damaging(0.884) TCGA-52-7811-01 17 48918274 48918274 C T WFIKKN2 Missense_Mutation p.P542L 0.42 deleterious(0) probably_damaging(1) TCGA-52-7811-01 17 51900826 51900826 G T KIF2B Missense_Mutation p.Q144H 0.27 deleterious(0.03) benign(0.332) TCGA-52-7811-01 17 53853443 53853443 C T PCTP Silent p.N209N 0.09 TCGA-52-7811-01 17 62533849 62533849 T C CEP95 Silent p.S806S 0.70 TCGA-52-7811-01 18 14763931 14763931 A G ANKRD30B Missense_Mutation p.E356G 0.32 tolerated(0.38) benign(0.001) TCGA-52-7811-01 18 18547017 18547017 T C ROCK1 Silent p.A1071A 0.20 TCGA-52-7811-01 18 19378178 19378178 A G MIB1 Missense_Mutation p.N409S 0.26 tolerated(0.31) benign(0.004) TCGA-52-7811-01 18 5395144 5395144 A C EPB41L3 Silent p.T1025T 0.19 TCGA-52-7811-01 18 60998937 60998937 A G KDSR 3'UTR 0.07 TCGA-52-7811-01 19 15838950 15838950 C A OR10H2 Missense_Mutation p.L33M 0.24 deleterious(0.04) benign(0.142) TCGA-52-7811-01 19 16532171 16532171 G - EPS15L1 Frame_Shift_Del p.F303Lfs*11 0.23 TCGA-52-7811-01 19 18329812 18329812 A G PDE4C Missense_Mutation p.F335L 0.39 deleterious(0.01) probably_damaging(0.997) TCGA-52-7811-01 19 55045150 55045150 G T KIR3DX1 Silent p.G90G 0.53 TCGA-52-7811-01 19 57889206 57889206 A G ZNF547 Missense_Mutation p.R288G 0.53 deleterious(0) possibly_damaging(0.651) TCGA-52-7811-01 19 58772316 58772316 A C ZNF544 Missense_Mutation p.E115A 0.06 tolerated(0.14) benign(0.258) TCGA-52-7811-01 19 7809893 7809893 G A CD209 Silent p.H278H 0.09 TCGA-52-7811-01 19 9050193 9050193 T C MUC16 Missense_Mutation p.K10480E 0.33 benign(0.007) TCGA-52-7811-01 19 9721787 9721787 G C ZNF561 Missense_Mutation p.L184V 0.08 tolerated(0.64) benign(0.338) TCGA-52-7811-01 1 11561391 11561391 G T PTCHD2 Missense_Mutation p.E114D 0.16 tolerated_low_confidence(0.45) possibly_damaging(0.764) TCGA-52-7811-01 1 11561392 11561392 G T PTCHD2 Missense_Mutation p.A115S 0.16 tolerated_low_confidence(1) probably_damaging(0.993) TCGA-52-7811-01 1 12443053 12443053 G T VPS13D Missense_Mutation p.G3737C 0.10 possibly_damaging(0.716) TCGA-52-7811-01 1 147230433 147230433 T A GJA5 Missense_Mutation p.E305V 0.18 tolerated(0.1) benign(0.021) TCGA-52-7811-01 1 152975885 152975885 C T SPRR3 Missense_Mutation p.A130V 0.47 tolerated(0.45) benign(0.062) TCGA-52-7811-01 1 154842108 154842108 G A KCNN3 Silent p.P111P 0.11 TCGA-52-7811-01 1 158607902 158607902 C T SPTA1 Missense_Mutation p.A1704T 0.34 tolerated(0.62) benign(0.021) TCGA-52-7811-01 1 158646020 158646020 G T SPTA1 Silent p.I341I 0.28 TCGA-52-7811-01 1 176659500 176659500 A C PAPPA2 Missense_Mutation p.T789P 0.16 tolerated(0.15) possibly_damaging(0.702) TCGA-52-7811-01 1 196395119 196395119 C T KCNT2 Splice_Site p.X329_splice 0.08 TCGA-52-7811-01 1 196715039 196715039 G A CFH Missense_Mutation p.E1135K 0.10 deleterious(0.01) possibly_damaging(0.77) TCGA-52-7811-01 1 197070672 197070672 T A ASPM Missense_Mutation p.Y2570F 0.30 tolerated(0.49) possibly_damaging(0.809) TCGA-52-7811-01 1 213415130 213415130 G A RPS6KC1 Missense_Mutation p.E771K 0.09 tolerated(0.74) benign(0.002) TCGA-52-7811-01 1 235826161 235826161 T A LYST 3'UTR 0.11 TCGA-52-7811-01 1 235826162 235826162 C A LYST 3'UTR 0.11 TCGA-52-7811-01 1 240370211 240370211 T A FMN2 Missense_Mutation p.L700Q 0.11 unknown(0) TCGA-52-7811-01 1 247875753 247875753 T C OR6F1 Missense_Mutation p.Y102C 0.12 deleterious(0.04) benign(0.053) TCGA-52-7811-01 1 248223999 248223999 C G OR2L3 Missense_Mutation p.Q6E 0.15 tolerated(0.17) benign(0.003) TCGA-52-7811-01 1 248224550 248224550 G T OR2L3 Missense_Mutation p.M189I 0.18 tolerated(0.24) benign(0.003) TCGA-52-7811-01 1 33237844 33237844 C T KIAA1522 Missense_Mutation p.P1022S 0.20 deleterious(0) probably_damaging(0.994) TCGA-52-7811-01 1 44878022 44878022 A C RNF220 Missense_Mutation p.N85H 0.14 tolerated_low_confidence(0.26) possibly_damaging(0.592) TCGA-52-7811-01 1 52824794 52824794 G A CC2D1B Silent p.L388L 0.08 TCGA-52-7811-01 1 66067234 66067234 G C LEPR Missense_Mutation p.S385T 0.11 deleterious(0.02) benign(0.1) TCGA-52-7811-01 1 82447611 82447611 C A LPHN2 Missense_Mutation p.A1061D 0.06 deleterious(0) possibly_damaging(0.697) TCGA-52-7811-01 20 139473 139473 C G DEFB127 Missense_Mutation p.I36M 0.20 deleterious(0.05) probably_damaging(0.966) TCGA-52-7811-01 20 42204951 42204951 G A SGK2 Missense_Mutation p.A321T 0.06 deleterious(0.01) benign(0.277) TCGA-52-7811-01 20 44979050 44979050 C A SLC35C2 Missense_Mutation p.A361S 0.14 deleterious_low_confidence(0.01) benign(0.016) TCGA-52-7811-01 20 50290724 50290724 G A ATP9A Silent p.F335F 0.22 TCGA-52-7811-01 21 40762734 40762734 A T WRB Missense_Mutation p.R71S 0.29 deleterious(0) possibly_damaging(0.686) TCGA-52-7811-01 21 45563217 45563217 G A C21orf33 Missense_Mutation p.A218T 0.09 deleterious(0) possibly_damaging(0.791) TCGA-52-7811-01 22 26164739 26164739 G A MYO18B Missense_Mutation p.G286R 0.27 tolerated_low_confidence(0.08) benign(0.056) TCGA-52-7811-01 22 37770411 37770411 C A ELFN2 Silent p.A388A 0.17 TCGA-52-7811-01 2 120439107 120439107 C T TMEM177 Silent p.A226A 0.26 TCGA-52-7811-01 2 155115593 155115593 G T GALNT13 Missense_Mutation p.G306V 0.29 deleterious(0) probably_damaging(0.982) TCGA-52-7811-01 2 179407584 179407584 G A TTN Missense_Mutation p.R32333C 0.24 TCGA-52-7811-01 2 179426298 179426298 A G TTN Silent p.I28187I 0.21 TCGA-52-7811-01 2 179631301 179631301 G T TTN Silent p.V3170V 0.24 TCGA-52-7811-01 2 192012859 192012859 T A STAT4 Missense_Mutation p.D24V 0.23 deleterious(0) probably_damaging(0.993) TCGA-52-7811-01 2 220026731 220026731 T G SLC23A3 Missense_Mutation p.E586A 0.26 deleterious(0.01) probably_damaging(0.955) TCGA-52-7811-01 2 223096897 223096897 A T PAX3 Missense_Mutation p.L231Q 0.15 deleterious(0) probably_damaging(1) TCGA-52-7811-01 2 227953483 227953483 G T COL4A4 Silent p.G503G 0.30 TCGA-52-7811-01 2 234890478 234890478 C T TRPM8 Silent p.Y836Y 0.37 TCGA-52-7811-01 2 238726615 238726615 A G RBM44 Missense_Mutation p.I352M 0.22 tolerated(0.78) benign(0.027) TCGA-52-7811-01 2 26532898 26532898 G C GPR113 Missense_Mutation p.L1052V 0.15 tolerated_low_confidence(0.08) benign(0.024) TCGA-52-7811-01 2 29259481 29259481 C A FAM179A Silent p.A831A 0.19 TCGA-52-7811-01 2 48037548 48037548 C T FBXO11 Missense_Mutation p.D749N 0.07 tolerated(0.18) possibly_damaging(0.722) TCGA-52-7811-01 2 54114519 54114519 G T PSME4 Silent p.R1536R 0.31 TCGA-52-7811-01 2 77748799 77748799 C T LRRTM4 5'UTR 0.12 TCGA-52-7811-01 2 90229433 90229433 A T IGKV1D-42 Missense_Mutation p.S85C 0.25 deleterious(0.01) possibly_damaging(0.906) TCGA-52-7811-01 3 123036929 123036929 A G ADCY5 Silent p.Y764Y 0.28 TCGA-52-7811-01 3 138738823 138738823 G C PRR23B Missense_Mutation p.S227R 0.12 tolerated(0.07) possibly_damaging(0.875) TCGA-52-7811-01 3 158991560 158991560 G T IQCJ-SCHIP1 Intron 0.29 TCGA-52-7811-01 3 158991561 158991561 A T IQCJ-SCHIP1 Intron 0.29 TCGA-52-7811-01 3 178952085 178952085 A T PIK3CA Missense_Mutation p.H1047L 0.25 tolerated(0.44) benign(0.085) TCGA-52-7811-01 3 38640517 38640517 C T SCN5A Missense_Mutation p.G639R 0.23 tolerated(0.63) benign(0.005) TCGA-52-7811-01 3 69026892 69026892 C G EOGT Missense_Mutation p.E403D 0.32 tolerated(0.5) possibly_damaging(0.801) TCGA-52-7811-01 4 189012801 189012801 C A TRIML2 Missense_Mutation p.G297V 0.20 deleterious(0) probably_damaging(0.976) TCGA-52-7811-01 4 52861508 52861508 G A LRRC66 Silent p.G560G 0.18 TCGA-52-7811-01 4 83602032 83602032 C T SCD5 Missense_Mutation p.A133T 0.09 deleterious(0.03) benign(0.063) TCGA-52-7811-01 4 89599125 89599125 A G HERC3 Missense_Mutation p.N679S 0.28 tolerated(0.45) benign(0.006) TCGA-52-7811-01 5 102309953 102309953 A C PAM Missense_Mutation p.K432N 0.34 deleterious(0.02) probably_damaging(0.99) TCGA-52-7811-01 5 140475894 140475894 C G PCDHB2 Missense_Mutation p.S507C 0.27 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-52-7811-01 5 140537771 140537771 C - PCDHB17 3'UTR 0.11 TCGA-52-7811-01 5 21751976 21751976 C A CDH12 Missense_Mutation p.S752I 0.17 deleterious(0.01) probably_damaging(1) TCGA-52-7811-01 5 2752844 2752844 G T C5orf38 Silent p.A103A 0.15 TCGA-52-7811-01 5 33588703 33588703 C A ADAMTS12 Splice_Site p.X955_splice 0.10 TCGA-52-7811-01 5 34020796 34020796 C G C1QTNF3 Missense_Mutation p.K284N 0.09 tolerated(0.09) possibly_damaging(0.867) TCGA-52-7811-01 5 50680505 50680505 C A ISL1 Missense_Mutation p.D53E 0.30 deleterious(0.04) possibly_damaging(0.588) TCGA-52-7811-01 5 87564598 87564598 C T TMEM161B 5'UTR 0.32 TCGA-52-7811-01 6 111346723 111346723 C T RPF2 Nonsense_Mutation p.R287* 0.07 TCGA-52-7811-01 6 117683785 117683785 C A ROS1 Missense_Mutation p.R1121I 0.40 deleterious(0.02) benign(0.325) TCGA-52-7811-01 6 117923408 117923408 G A GOPC Missense_Mutation p.P15L 0.42 deleterious_low_confidence(0) benign(0) TCGA-52-7811-01 6 26217559 26217559 G A HIST1H2AE Silent p.K119K 0.12 TCGA-52-7811-01 6 32021354 32021354 C T TNXB Missense_Mutation p.E2866K 0.35 possibly_damaging(0.502) TCGA-52-7811-01 6 33245231 33245231 C T B3GALT4 Missense_Mutation p.A12V 0.23 tolerated(0.83) benign(0.184) TCGA-52-7811-01 6 38897296 38897296 C A DNAH8 Missense_Mutation p.L3493M 0.19 probably_damaging(0.913) TCGA-52-7811-01 6 41908776 41908776 C T CCND3 Intron 0.30 TCGA-52-7811-01 7 100680212 100680212 G T MUC17 Missense_Mutation p.V1839L 0.18 benign(0.015) TCGA-52-7811-01 7 100773723 100773723 T C SERPINE1 Missense_Mutation p.L98P 0.09 deleterious(0.01) probably_damaging(0.981) TCGA-52-7811-01 7 11457166 11457166 C G THSD7A Missense_Mutation p.E1150Q 0.09 deleterious(0.04) possibly_damaging(0.533) TCGA-52-7811-01 7 11676400 11676400 C G THSD7A Missense_Mutation p.G127R 0.09 deleterious(0) possibly_damaging(0.883) TCGA-52-7811-01 7 139876585 139876585 G T KDM7A Missense_Mutation p.F51L 0.21 deleterious(0.04) benign(0.162) TCGA-52-7811-01 7 143092268 143092268 C A EPHA1 Silent p.P697P 0.20 TCGA-52-7811-01 7 143807411 143807411 G T OR2A2 Missense_Mutation p.V246L 0.22 deleterious(0) probably_damaging(0.915) TCGA-52-7811-01 7 14620560 14620560 G T DGKB Silent p.G513G 0.14 TCGA-52-7811-01 7 14724985 14724985 G A DGKB Silent p.N238N 0.19 TCGA-52-7811-01 7 147844701 147844701 C G CNTNAP2 Silent p.V891V 0.20 TCGA-52-7811-01 7 51092901 51092901 T A COBL Missense_Mutation p.R1225W 0.10 deleterious(0) probably_damaging(0.988) TCGA-52-7811-01 7 94750047 94750047 A G PPP1R9A Missense_Mutation p.I518V 0.17 deleterious(0) probably_damaging(0.957) TCGA-52-7811-01 8 100147345 100147345 A - VPS13B Frame_Shift_Del p.N469Ifs*2 0.13 TCGA-52-7811-01 8 110456118 110456118 C T PKHD1L1 Missense_Mutation p.P1593L 0.24 tolerated(0.12) benign(0.002) TCGA-52-7811-01 8 113933912 113933912 C T CSMD3 Missense_Mutation p.C526Y 0.28 deleterious(0) probably_damaging(0.979) TCGA-52-7811-01 8 117868521 117868521 C A RAD21 Missense_Mutation p.G274V 0.28 deleterious(0.01) benign(0.009) TCGA-52-7811-01 8 117868522 117868522 C A RAD21 Missense_Mutation p.G274W 0.28 deleterious(0) possibly_damaging(0.502) TCGA-52-7811-01 8 125083827 125083827 G A FER1L6 Silent p.P1349P 0.14 TCGA-52-7811-01 8 144993155 144993155 G C PLEC Missense_Mutation p.R3749G 0.26 possibly_damaging(0.57) TCGA-52-7811-01 8 35406952 35406952 G C UNC5D Missense_Mutation p.Q82H 0.13 deleterious(0) probably_damaging(0.998) TCGA-52-7811-01 8 40554780 40554780 G T ZMAT4 Silent p.T111T 0.19 TCGA-52-7811-01 8 68931879 68931879 A T PREX2 Missense_Mutation p.Q103H 0.23 tolerated(1) benign(0.001) TCGA-52-7811-01 8 6914205 6914205 G T DEFA5 Silent p.A5A 0.12 TCGA-52-7811-01 8 98943207 98943207 G T MATN2 Missense_Mutation p.D57Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-52-7811-01 9 104048458 104048458 A C LPPR1 Missense_Mutation p.I109L 0.15 tolerated(0.08) benign(0.012) TCGA-52-7811-01 9 104499805 104499805 C A GRIN3A Missense_Mutation p.A153S 0.10 deleterious(0.02) possibly_damaging(0.771) TCGA-52-7811-01 9 104499806 104499806 C T GRIN3A Missense_Mutation p.M152I 0.12 tolerated(0.1) benign(0.071) TCGA-52-7811-01 9 72755169 72755169 A G MAMDC2 Missense_Mutation p.N368S 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-52-7811-01 9 79320664 79320664 C A PRUNE2 Missense_Mutation p.D2176Y 0.14 deleterious(0) possibly_damaging(0.641) TCGA-52-7811-01 9 84607108 84607108 C G SPATA31D1 Missense_Mutation p.L575V 0.20 tolerated(0.13) benign(0.068) TCGA-52-7811-01 9 90313606 90313606 G T DAPK1 Missense_Mutation p.V883F 0.10 deleterious(0) benign(0.117) TCGA-52-7811-01 X 123637472 123637472 A G TENM1 Missense_Mutation p.M1128T 0.36 tolerated(0.22) benign(0.019) TCGA-52-7811-01 X 23018671 23018671 G T DDX53 Missense_Mutation p.R166I 0.45 tolerated(0.12) benign(0.017) TCGA-52-7811-01 X 24839677 24839677 A T POLA1 Missense_Mutation p.T1174S 0.32 deleterious(0.01) probably_damaging(0.977) TCGA-52-7811-01 X 78216581 78216581 G T P2RY10 Missense_Mutation p.K188N 0.25 deleterious(0.03) benign(0.014) TCGA-52-7811-01 X 9673126 9673126 G T TBL1X Missense_Mutation p.R403L 0.28 deleterious(0.04) benign(0.094) TCGA-52-7812-01 10 102676881 102676881 C T FAM178A Nonsense_Mutation p.R247* 0.19 TCGA-52-7812-01 10 106074376 106074376 G A ITPRIP Silent p.F478F 0.28 TCGA-52-7812-01 10 108357157 108357157 G T SORCS1 Missense_Mutation p.L1073M 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-52-7812-01 10 118713693 118713693 C A KIAA1598 Missense_Mutation p.R99I 0.29 deleterious(0.01) probably_damaging(0.984) TCGA-52-7812-01 10 123844425 123844425 G A TACC2 Missense_Mutation p.G804R 0.26 benign(0.203) TCGA-52-7812-01 10 127541164 127541164 G A DHX32 Silent p.I380I 0.08 TCGA-52-7812-01 10 18266983 18266983 G T SLC39A12 Missense_Mutation p.G302C 0.26 tolerated(0.16) possibly_damaging(0.682) TCGA-52-7812-01 10 26518626 26518626 G T GAD2 Missense_Mutation p.A254S 0.29 deleterious(0) possibly_damaging(0.841) TCGA-52-7812-01 10 27311563 27311563 C A ANKRD26 Missense_Mutation p.G1380V 0.21 tolerated(0.07) possibly_damaging(0.885) TCGA-52-7812-01 10 35842073 35842073 G C CCNY Missense_Mutation p.D236H 0.04 deleterious(0) probably_damaging(0.954) TCGA-52-7812-01 10 48389834 48389834 G T RBP3 Silent p.P348P 0.26 TCGA-52-7812-01 10 49392618 49392618 G C FRMPD2 Missense_Mutation p.Q859E 0.24 deleterious(0) probably_damaging(0.99) TCGA-52-7812-01 10 55566377 55566377 G T PCDH15 Missense_Mutation p.P1670T 0.11 deleterious_low_confidence(0) benign(0.002) TCGA-52-7812-01 10 5931003 5931003 C G ANKRD16 Splice_Site p.X105_splice 0.24 TCGA-52-7812-01 10 71136709 71136709 G T HK1 Missense_Mutation p.G303C 0.24 deleterious(0) probably_damaging(1) TCGA-52-7812-01 10 73588691 73588691 G A PSAP Silent p.A173A 0.17 TCGA-52-7812-01 10 81373915 81373915 G T SFTPA1 3'UTR 0.33 TCGA-52-7812-01 10 871237 871237 G C LARP4B Missense_Mutation p.L418V 0.24 tolerated(0.08) possibly_damaging(0.495) TCGA-52-7812-01 10 97626184 97626184 G A ENTPD1 3'UTR 0.54 TCGA-52-7812-01 11 100998782 100998782 G T PGR Silent p.A340A 0.56 TCGA-52-7812-01 11 11398909 11398909 G A GALNT18 Missense_Mutation p.T266I 0.16 deleterious(0.02) benign(0.053) TCGA-52-7812-01 11 119056192 119056192 G T PDZD3 5'UTR 0.60 TCGA-52-7812-01 11 134188806 134188806 T G GLB1L3 Missense_Mutation p.D644E 0.21 tolerated(1) benign(0.002) TCGA-52-7812-01 11 13736148 13736148 C T FAR1 Missense_Mutation p.H350Y 0.31 tolerated(0.32) benign(0) TCGA-52-7812-01 11 14063065 14063065 T C SPON1 Intron 0.25 TCGA-52-7812-01 11 14520472 14520472 C A COPB1 Translation_Start_Site p.M1? 0.20 deleterious(0) benign(0.419) TCGA-52-7812-01 11 18051070 18051070 C A TPH1 Missense_Mutation p.M153I 0.22 tolerated(0.09) benign(0.007) TCGA-52-7812-01 11 30601879 30601879 C T MPPED2 Silent p.T14T 0.27 TCGA-52-7812-01 11 44639762 44639762 G A CD82 Silent p.E163E 0.25 TCGA-52-7812-01 11 5322394 5322394 A T OR51B4 Missense_Mutation p.F261L 0.29 deleterious(0.01) possibly_damaging(0.766) TCGA-52-7812-01 11 55406327 55406327 C A OR4P4 Missense_Mutation p.P165Q 0.56 deleterious(0) probably_damaging(0.982) TCGA-52-7812-01 11 56510874 56510874 A G OR9G4 Silent p.H138H 0.21 TCGA-52-7812-01 11 57886198 57886198 G T OR9I1 Missense_Mutation p.T240K 0.24 deleterious(0) probably_damaging(1) TCGA-52-7812-01 11 61077409 61077409 G A DDB1 Nonsense_Mutation p.Q809* 0.31 TCGA-52-7812-01 11 6129696 6129696 T C OR56B4 Missense_Mutation p.S230P 0.33 deleterious(0) probably_damaging(0.962) TCGA-52-7812-01 11 619808 619808 G T CDHR5 Missense_Mutation p.P351Q 0.33 tolerated(0.41) possibly_damaging(0.74) TCGA-52-7812-01 11 64084424 64084424 C A TRMT112 Missense_Mutation p.G96V 0.32 deleterious(0) probably_damaging(0.997) TCGA-52-7812-01 11 66357973 66357973 C G CCDC87 Missense_Mutation p.Q838H 0.21 tolerated(0.05) benign(0.008) TCGA-52-7812-01 11 71821536 71821536 G C LRTOMT 3'UTR 0.45 TCGA-52-7812-01 11 76891430 76891430 G A MYO7A Missense_Mutation p.R866H 0.38 tolerated(0.16) probably_damaging(0.998) TCGA-52-7812-01 11 86270863 86270863 C A ME3 Silent p.G62G 0.20 TCGA-52-7812-01 11 89403612 89403612 G T FOLH1B RNA 0.45 TCGA-52-7812-01 11 89867913 89867913 G T NAALAD2 5'UTR 0.51 TCGA-52-7812-01 11 92715327 92715327 A T MTNR1B Missense_Mutation p.Q313L 0.51 deleterious(0.01) benign(0.036) TCGA-52-7812-01 11 95519417 95519417 T A FAM76B Missense_Mutation p.N77Y 0.57 deleterious(0) probably_damaging(0.988) TCGA-52-7812-01 12 110240799 110240799 G T TRPV4 Silent p.R237R 0.26 TCGA-52-7812-01 12 124343771 124343771 G T DNAH10 Silent p.G2117G 0.10 TCGA-52-7812-01 12 25398284 25398284 C G KRAS Missense_Mutation p.G12A 0.41 deleterious(0.02) possibly_damaging(0.773) TCGA-52-7812-01 12 2676917 2676917 G A CACNA1C Missense_Mutation p.V618M 0.18 deleterious(0.01) possibly_damaging(0.866) TCGA-52-7812-01 12 39973345 39973345 A T ABCD2 Missense_Mutation p.F623L 0.39 deleterious(0.03) possibly_damaging(0.669) TCGA-52-7812-01 12 4919603 4919603 G T KCNA6 Silent p.A132A 0.56 TCGA-52-7812-01 12 52827849 52827849 G T KRT75 Nonsense_Mutation p.C80* 0.17 TCGA-52-7812-01 12 52967118 52967118 G A KRT74 Silent p.N148N 0.43 TCGA-52-7812-01 12 56380883 56380883 G T RAB5B Nonsense_Mutation p.E47* 0.22 TCGA-52-7812-01 12 6658651 6658651 C A IFFO1 Splice_Site p.X358_splice 0.58 TCGA-52-7812-01 12 7343007 7343007 G T PEX5 Missense_Mutation p.G12W 0.44 deleterious(0) probably_damaging(1) TCGA-52-7812-01 12 78334155 78334155 C A NAV3 Silent p.I100I 0.30 TCGA-52-7812-01 12 8814684 8814684 G T MFAP5 Missense_Mutation p.P6H 0.52 deleterious(0.03) benign(0.109) TCGA-52-7812-01 13 25266757 25266757 A G ATP12A Missense_Mutation p.D426G 0.33 deleterious(0.05) benign(0.173) TCGA-52-7812-01 13 26133130 26133130 A T ATP8A2 Missense_Mutation p.D428V 0.30 deleterious(0) probably_damaging(1) TCGA-52-7812-01 13 36428657 36428657 T A DCLK1 Silent p.P338P 0.30 TCGA-52-7812-01 13 38158941 38158941 T A POSTN Silent p.V340V 0.43 TCGA-52-7812-01 13 42876328 42876331 TGTC - AKAP11 Frame_Shift_Del p.S1150Rfs*7 0.26 TCGA-52-7812-01 13 77792073 77792073 G A MYCBP2 Nonsense_Mutation p.Q949* 0.33 TCGA-52-7812-01 13 88329467 88329467 G T SLITRK5 Silent p.S608S 0.36 TCGA-52-7812-01 14 102474572 102474572 G A DYNC1H1 Missense_Mutation p.E1959K 0.21 probably_damaging(1) TCGA-52-7812-01 14 102514311 102514311 G T DYNC1H1 Silent p.L4388L 0.24 TCGA-52-7812-01 14 105517549 105517549 C T GPR132 Missense_Mutation p.V309M 0.23 tolerated(0.06) possibly_damaging(0.593) TCGA-52-7812-01 14 105643361 105643361 C A NUDT14 Silent p.V43V 0.36 TCGA-52-7812-01 14 107178982 107178982 G T IGHV2-70 Silent p.A65A 0.14 TCGA-52-7812-01 14 23867997 23867997 G A MYH6 Nonsense_Mutation p.Q611* 0.31 TCGA-52-7812-01 14 31354664 31354664 C A COCH Silent p.I266I 0.31 TCGA-52-7812-01 14 47324287 47324288 CC - MDGA2 Frame_Shift_Del p.G941Efs*2 0.20 TCGA-52-7812-01 14 72985182 72985182 C A RGS6 Missense_Mutation p.H405Q 0.30 tolerated(0.09) benign(0.006) TCGA-52-7812-01 14 74825552 74825552 G T VRTN Missense_Mutation p.W689L 0.21 deleterious(0) probably_damaging(0.998) TCGA-52-7812-01 14 76966239 76966239 G A ESRRB Missense_Mutation p.D444N 0.27 tolerated_low_confidence(0.14) benign(0.002) TCGA-52-7812-01 14 80668810 80668810 G A DIO2 3'Flank 0.22 TCGA-52-7812-01 14 81209601 81209601 T A CEP128 Missense_Mutation p.Q875L 0.21 deleterious(0) possibly_damaging(0.492) TCGA-52-7812-01 15 22368630 22368630 C A OR4M2 Missense_Mutation p.Q19K 0.20 tolerated(0.07) benign(0.058) TCGA-52-7812-01 15 22383242 22383242 T C OR4N4 Missense_Mutation p.I257T 0.04 deleterious(0.03) probably_damaging(0.999) TCGA-52-7812-01 15 25442582 25442582 C T SNORD115-14 3'Flank 0.30 TCGA-52-7812-01 15 30001189 30001189 G A TJP1 Missense_Mutation p.P1475L 0.28 deleterious_low_confidence(0.04) benign(0.003) TCGA-52-7812-01 15 31332381 31332381 C A TRPM1 Missense_Mutation p.Q769H 0.29 deleterious(0) probably_damaging(0.982) TCGA-52-7812-01 15 34395254 34395254 G C PGBD4 Missense_Mutation p.E174D 0.28 tolerated(0.53) benign(0.127) TCGA-52-7812-01 15 43714074 43714074 C G TP53BP1 Missense_Mutation p.R1360P 0.22 deleterious(0.01) possibly_damaging(0.891) TCGA-52-7812-01 15 44955870 44955870 C T SPG11 5'Flank 0.27 TCGA-52-7812-01 15 63128235 63128235 A G TLN2 Missense_Mutation p.K2446R 0.23 deleterious(0.02) benign(0.151) TCGA-52-7812-01 15 75705164 75705164 G A SIN3A Silent p.A232A 0.25 TCGA-52-7812-01 15 85410556 85410556 T A ALPK3 Missense_Mutation p.W1780R 0.19 deleterious(0) probably_damaging(1) TCGA-52-7812-01 16 21145622 21145622 A C DNAH3 Missense_Mutation p.V347G 0.36 tolerated(0.3) benign(0.002) TCGA-52-7812-01 16 2153389 2153389 G A PKD1 Missense_Mutation p.S2890F 0.38 benign(0.072) TCGA-52-7812-01 16 27761013 27761013 G T KIAA0556 Missense_Mutation p.R911L 0.18 deleterious(0) probably_damaging(0.997) TCGA-52-7812-01 16 49671208 49671208 G T ZNF423 Silent p.R619R 0.28 TCGA-52-7812-01 16 53190762 53190762 G T CHD9 Missense_Mutation p.G254V 0.24 possibly_damaging(0.774) TCGA-52-7812-01 16 75263600 75263600 C A BCAR1 Missense_Mutation p.V854L 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-52-7812-01 16 83998724 83998724 C T OSGIN1 Silent p.Y182Y 0.04 TCGA-52-7812-01 16 9943737 9943737 C T GRIN2A Missense_Mutation p.D402N 0.13 deleterious(0) probably_damaging(0.998) TCGA-52-7812-01 17 10448674 10448674 A T MYH2 Missense_Mutation p.F165Y 0.36 tolerated(1) benign(0.002) TCGA-52-7812-01 17 30376201 30376201 G A LRRC37B Missense_Mutation p.V822I 0.35 tolerated(0.15) benign(0) TCGA-52-7812-01 17 42169571 42169571 A T HDAC5 Missense_Mutation p.F335Y 0.43 tolerated(0.91) probably_damaging(0.961) TCGA-52-7812-01 17 42255716 42255716 C T ASB16 Silent p.L440L 0.24 TCGA-52-7812-01 17 60045503 60045503 G A MED13 Missense_Mutation p.P1362S 0.15 deleterious(0) probably_damaging(0.998) TCGA-52-7812-01 17 66918404 66918404 C G ABCA8 Missense_Mutation p.D494H 0.17 tolerated(0.06) benign(0.438) TCGA-52-7812-01 17 67211991 67211991 G A ABCA10 Missense_Mutation p.L275F 0.23 tolerated(0.87) benign(0.019) TCGA-52-7812-01 17 70120104 70120104 A T SOX9 Missense_Mutation p.Q369L 0.25 tolerated(0.25) benign(0.006) TCGA-52-7812-01 17 72345367 72345367 C G KIF19 Nonsense_Mutation p.Y364* 0.12 TCGA-52-7812-01 17 7412467 7412467 C T POLR2A Missense_Mutation p.R1224W 0.34 probably_damaging(0.978) TCGA-52-7812-01 17 8273153 8273153 C T KRBA2 Missense_Mutation p.D260N 0.29 tolerated(1) benign(0.005) TCGA-52-7812-01 17 8791921 8791921 T A PIK3R5 Missense_Mutation p.S395C 0.32 deleterious(0.02) probably_damaging(0.943) TCGA-52-7812-01 18 28934305 28934305 G T DSG1 Missense_Mutation p.D716Y 0.39 deleterious(0) probably_damaging(1) TCGA-52-7812-01 18 29598971 29598971 C T RNF125 Missense_Mutation p.R49W 0.43 deleterious(0) probably_damaging(1) TCGA-52-7812-01 18 3135623 3135623 G A MYOM1 Missense_Mutation p.R711C 0.31 deleterious(0) probably_damaging(1) TCGA-52-7812-01 18 43247910 43247910 G C SLC14A2 Missense_Mutation p.Q610H 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-52-7812-01 18 580861 580861 G T CETN1 Silent p.R151R 0.24 TCGA-52-7812-01 18 61570548 61570548 G T SERPINB2 3'UTR 0.26 TCGA-52-7812-01 18 63548107 63548107 G T CDH7 Missense_Mutation p.G779C 0.42 deleterious(0) probably_damaging(0.928) TCGA-52-7812-01 19 10791103 10791103 T C ILF3 Missense_Mutation p.I314T 0.23 deleterious(0) probably_damaging(0.913) TCGA-52-7812-01 19 12126945 12126945 C G ZNF433 Missense_Mutation p.R246T 0.19 deleterious(0.03) probably_damaging(0.998) TCGA-52-7812-01 19 13410060 13410060 T A CACNA1A Missense_Mutation p.E796V 0.21 possibly_damaging(0.632) TCGA-52-7812-01 19 14520364 14520364 T - DDX39A Frame_Shift_Del p.M320Wfs*66 0.19 TCGA-52-7812-01 19 1796182 1796182 G C ATP8B3 Silent p.S612S 0.19 TCGA-52-7812-01 19 1819119 1819119 G A REXO1 Missense_Mutation p.R888C 0.09 deleterious(0) probably_damaging(0.939) TCGA-52-7812-01 19 19656734 19656734 G A CILP2 Missense_Mutation p.G1127D 0.24 tolerated(0.21) benign(0.003) TCGA-52-7812-01 19 20236007 20236007 T A CTC-260E6.2 RNA 0.31 TCGA-52-7812-01 19 20807523 20807523 T C ZNF626 Missense_Mutation p.H387R 0.20 deleterious(0) probably_damaging(0.995) TCGA-52-7812-01 19 31039994 31039994 C A ZNF536 Missense_Mutation p.N1156K 0.19 tolerated_low_confidence(0.13) benign(0.031) TCGA-52-7812-01 19 35524464 35524464 T - SCN1B Frame_Shift_Del p.V90Gfs*57 0.27 TCGA-52-7812-01 19 36398356 36398356 G T TYROBP Missense_Mutation p.A74D 0.27 tolerated(0.29) benign(0.287) TCGA-52-7812-01 19 38189714 38189714 T A ZNF607 Missense_Mutation p.N440Y 0.28 deleterious(0.01) benign(0.001) TCGA-52-7812-01 19 44680652 44680652 C T ZNF226 Missense_Mutation p.H413Y 0.19 deleterious(0) probably_damaging(1) TCGA-52-7812-01 19 44933234 44933234 G C ZNF229 Missense_Mutation p.C574W 0.19 deleterious(0) probably_damaging(1) TCGA-52-7812-01 19 4498335 4498335 C T HDGFRP2 Missense_Mutation p.H479Y 0.19 deleterious(0) benign(0.291) TCGA-52-7812-01 19 46973004 46973004 C A PNMAL1 Missense_Mutation p.R430L 0.27 tolerated(0.23) benign(0.433) TCGA-52-7812-01 19 47951480 47951480 G T SLC8A2 Missense_Mutation p.T450K 0.36 deleterious(0.01) possibly_damaging(0.686) TCGA-52-7812-01 19 48848538 48848538 G A TMEM143 Missense_Mutation p.S148F 0.27 deleterious(0.03) benign(0.262) TCGA-52-7812-01 19 50949230 50949230 A T MYBPC2 Silent p.S409S 0.20 TCGA-52-7812-01 19 55239119 55239119 T A KIR3DL3 Missense_Mutation p.L133Q 0.25 deleterious(0) probably_damaging(0.992) TCGA-52-7812-01 19 55421423 55421423 C T NCR1 Missense_Mutation p.P227L 0.26 tolerated(0.5) benign(0.001) TCGA-52-7812-01 19 55447652 55447652 A G NLRP7 Silent p.H759H 0.37 TCGA-52-7812-01 19 55711636 55711636 C A PTPRH Missense_Mutation p.R463L 0.32 benign(0.002) TCGA-52-7812-01 19 57867809 57867809 G T ZNF304 Missense_Mutation p.R191M 0.28 deleterious(0.03) benign(0.243) TCGA-52-7812-01 19 58864709 58864709 C T A1BG Intron 0.30 TCGA-52-7812-01 19 7585074 7585074 G A ZNF358 Missense_Mutation p.E316K 0.32 deleterious(0) probably_damaging(0.938) TCGA-52-7812-01 19 7693043 7693043 G A XAB2 Missense_Mutation p.P65S 0.25 deleterious(0) probably_damaging(0.995) TCGA-52-7812-01 19 9076247 9076247 C G MUC16 Silent p.L3733L 0.24 TCGA-52-7812-01 19 9080486 9080486 G T MUC16 Missense_Mutation p.P3182H 0.27 unknown(0) TCGA-52-7812-01 19 9080487 9080487 G T MUC16 Missense_Mutation p.P3182T 0.27 unknown(0) TCGA-52-7812-01 1 115215854 115215854 C A AMPD1 Missense_Mutation p.G742C 0.44 deleterious(0) probably_damaging(1) TCGA-52-7812-01 1 12919960 12919960 C G PRAMEF2 Missense_Mutation p.L234V 0.36 tolerated(0.37) possibly_damaging(0.708) TCGA-52-7812-01 1 14109038 14109038 A G PRDM2 Missense_Mutation p.K1583R 0.23 unknown(0) TCGA-52-7812-01 1 145539681 145539681 A G ITGA10 Splice_Site p.X1039_splice 0.32 TCGA-52-7812-01 1 1458163 1458163 G A ATAD3A Missense_Mutation p.A312T 0.27 deleterious(0) probably_damaging(0.912) TCGA-52-7812-01 1 152185994 152185994 G T HRNR Missense_Mutation p.S2704Y 0.19 unknown(0) TCGA-52-7812-01 1 152283304 152283304 G A FLG Missense_Mutation p.P1353L 0.18 possibly_damaging(0.908) TCGA-52-7812-01 1 156811997 156811997 C A INSRR Missense_Mutation p.G1102C 0.39 deleterious(0) probably_damaging(1) TCGA-52-7812-01 1 160849119 160849119 G T ITLN1 Silent p.T257T 0.36 TCGA-52-7812-01 1 161680628 161680628 C G FCRLA Missense_Mutation p.T76S 0.19 tolerated(0.12) benign(0.071) TCGA-52-7812-01 1 165183002 165183002 C A LMX1A Missense_Mutation p.G182V 0.19 tolerated(0.06) benign(0.009) TCGA-52-7812-01 1 165183003 165183003 C A LMX1A Missense_Mutation p.G182W 0.19 deleterious(0) possibly_damaging(0.664) TCGA-52-7812-01 1 167095787 167095787 G T DUSP27 Silent p.S473S 0.19 TCGA-52-7812-01 1 169806126 169806126 A G C1orf112 Missense_Mutation p.H533R 0.19 tolerated(0.08) possibly_damaging(0.522) TCGA-52-7812-01 1 170967533 170967533 A T MROH9 Intron 0.20 TCGA-52-7812-01 1 176668700 176668700 C A PAPPA2 Missense_Mutation p.H1071N 0.42 tolerated(0.28) benign(0.003) TCGA-52-7812-01 1 185891556 185891556 A G HMCN1 Missense_Mutation p.T316A 0.17 possibly_damaging(0.899) TCGA-52-7812-01 1 201054642 201054642 G T CACNA1S Missense_Mutation p.Q358K 0.19 deleterious(0.01) possibly_damaging(0.818) TCGA-52-7812-01 1 202287265 202287265 G T LGR6 Missense_Mutation p.G612C 0.25 deleterious(0) probably_damaging(1) TCGA-52-7812-01 1 202287266 202287266 G T LGR6 Missense_Mutation p.G612V 0.25 deleterious(0.01) probably_damaging(1) TCGA-52-7812-01 1 211842590 211842590 C A NEK2 Nonsense_Mutation p.E284* 0.29 TCGA-52-7812-01 1 21205951 21205951 C T EIF4G3 Silent p.L779L 0.33 TCGA-52-7812-01 1 214171324 214171324 C - PROX1 Frame_Shift_Del p.F484Sfs*5 0.20 TCGA-52-7812-01 1 228873448 228873448 G A RHOU Silent p.V97V 0.31 TCGA-52-7812-01 1 237753984 237753984 G T RYR2 Missense_Mutation p.K1284N 0.21 benign(0.033) TCGA-52-7812-01 1 2452728 2452728 G A PANK4 Silent p.P78P 0.35 TCGA-52-7812-01 1 247654494 247654494 G A OR2W5 RNA 0.24 TCGA-52-7812-01 1 247655174 247655174 C A OR2W5 RNA 0.21 TCGA-52-7812-01 1 248059231 248059231 C T OR2W3 Silent p.L115L 0.25 TCGA-52-7812-01 1 46867817 46867817 C T FAAH Nonsense_Mutation p.Q84* 0.20 TCGA-52-7812-01 1 47746133 47746133 C A STIL Missense_Mutation p.R666I 0.21 tolerated(0.21) benign(0.022) TCGA-52-7812-01 1 47840885 47840885 C T CMPK1 Nonsense_Mutation p.Q189* 0.21 TCGA-52-7812-01 1 54666042 54666042 G T MRPL37 Missense_Mutation p.E42D 0.30 tolerated(0.14) benign(0.282) TCGA-52-7812-01 1 63018453 63018453 C A DOCK7 Missense_Mutation p.G906W 0.30 tolerated(0.05) possibly_damaging(0.879) TCGA-52-7812-01 1 70385268 70385268 C A LRRC7 Intron 0.40 TCGA-52-7812-01 1 74507415 74507415 C A LRRIQ3 Missense_Mutation p.L400F 0.26 tolerated(0.57) benign(0.316) TCGA-52-7812-01 20 11898792 11898792 G T BTBD3 5'UTR 0.23 TCGA-52-7812-01 20 1552521 1552521 G T SIRPB1 Missense_Mutation p.P199H 0.22 deleterious(0) probably_damaging(0.991) TCGA-52-7812-01 20 21346243 21346243 G T XRN2 Missense_Mutation p.W786L 0.24 tolerated(0.59) benign(0.003) TCGA-52-7812-01 20 23346169 23346171 GAA - GZF1 In_Frame_Del p.K385del 0.29 TCGA-52-7812-01 20 35075156 35075156 T A DLGAP4 Missense_Mutation p.S488R 0.19 tolerated(0.25) possibly_damaging(0.809) TCGA-52-7812-01 20 44439934 44439934 G A DNTTIP1 3'UTR 0.22 TCGA-52-7812-01 20 44599954 44599954 T C ZNF335 Silent p.S32S 0.44 TCGA-52-7812-01 20 47866126 47866126 C T ZNFX1 Silent p.L1145L 0.30 TCGA-52-7812-01 20 56073645 56073645 G T CTCFL Silent p.G651G 0.17 TCGA-52-7812-01 20 57769479 57769479 T A ZNF831 Silent p.T1135T 0.24 TCGA-52-7812-01 20 61461904 61461904 A T COL9A3 Silent p.P417P 0.29 TCGA-52-7812-01 20 61467276 61467276 C A COL9A3 Missense_Mutation p.P458T 0.26 tolerated(0.28) possibly_damaging(0.843) TCGA-52-7812-01 20 61959428 61959428 C G COL20A1 Intron 0.25 TCGA-52-7812-01 21 32499410 32499410 G A TIAM1 Missense_Mutation p.P1369L 0.31 deleterious(0) benign(0.113) TCGA-52-7812-01 21 42710401 42710401 A T FAM3B Missense_Mutation p.Y87F 0.26 tolerated(0.69) benign(0.011) TCGA-52-7812-01 22 17072854 17072854 C - CCT8L2 Frame_Shift_Del p.G196Afs*27 0.28 TCGA-52-7812-01 22 19486653 19486653 G T CDC45 Missense_Mutation p.W260L 0.21 tolerated(0.51) benign(0.007) TCGA-52-7812-01 22 19967344 19967344 G A ARVCF Missense_Mutation p.R440W 0.41 deleterious(0) probably_damaging(0.996) TCGA-52-7812-01 22 21998376 21998376 G T SDF2L1 Missense_Mutation p.S193I 0.35 deleterious(0.04) possibly_damaging(0.621) TCGA-52-7812-01 22 22569571 22569575 GAAAC AAAA IGLV10-54 Frame_Shift_Del p.G88Efs*6 0.32 TCGA-52-7812-01 22 26117340 26117340 G A ADRBK2 Silent p.G627G 0.33 TCGA-52-7812-01 22 44527364 44527364 C T PARVB Intron 0.34 TCGA-52-7812-01 22 47108085 47108085 G C CERK Missense_Mutation p.S162C 0.28 tolerated(0.12) benign(0.053) TCGA-52-7812-01 2 11355150 11355150 G C ROCK2 Silent p.T584T 0.26 TCGA-52-7812-01 2 121747009 121747009 G T GLI2 Silent p.V1173V 0.17 TCGA-52-7812-01 2 125521662 125521662 C A CNTNAP5 Missense_Mutation p.A823E 0.20 deleterious(0) possibly_damaging(0.794) TCGA-52-7812-01 2 128380826 128380826 G T MYO7B Missense_Mutation p.G1206V 0.25 deleterious(0) probably_damaging(1) TCGA-52-7812-01 2 128412029 128412029 C A LIMS2 Missense_Mutation p.A134S 0.25 tolerated(0.08) possibly_damaging(0.548) TCGA-52-7812-01 2 136023130 136023130 A G ZRANB3 Silent p.L505L 0.36 TCGA-52-7812-01 2 136566361 136566361 G A LCT Silent p.L1186L 0.27 TCGA-52-7812-01 2 152321339 152321339 G A RIF1 Missense_Mutation p.A1769T 0.16 tolerated(1) benign(0.001) TCGA-52-7812-01 2 168108382 168108382 C T XIRP2 Silent p.L3494L 0.29 TCGA-52-7812-01 2 170092514 170092514 C A LRP2 Missense_Mutation p.G1586C 0.23 probably_damaging(1) TCGA-52-7812-01 2 178098944 178098944 C A NFE2L2 Missense_Mutation p.R34L 0.18 deleterious(0) probably_damaging(1) TCGA-52-7812-01 2 178098959 178098959 T C NFE2L2 Missense_Mutation p.D29G 0.18 deleterious(0) probably_damaging(1) TCGA-52-7812-01 2 182389967 182389967 G C ITGA4 Missense_Mutation p.R763T 0.26 tolerated(0.96) benign(0.002) TCGA-52-7812-01 2 185463705 185463705 G A ZNF804A Missense_Mutation p.V7I 0.19 deleterious(0) benign(0.417) TCGA-52-7812-01 2 1907001 1907001 G C MYT1L Missense_Mutation p.T626S 0.28 tolerated(0.79) benign(0.017) TCGA-52-7812-01 2 198264984 198264984 A T SF3B1 Missense_Mutation p.C965S 0.27 deleterious(0.02) possibly_damaging(0.555) TCGA-52-7812-01 2 208994236 208994236 C T CRYGC Missense_Mutation p.G61R 0.24 deleterious(0.02) possibly_damaging(0.815) TCGA-52-7812-01 2 215440516 215440516 G T VWC2L Missense_Mutation p.R214L 0.24 tolerated(0.09) probably_damaging(0.969) TCGA-52-7812-01 2 217148414 217148414 G T MARCH4 Silent p.V185V 0.19 TCGA-52-7812-01 2 220285289 220285289 C A DES Missense_Mutation p.L270I 0.15 deleterious(0) probably_damaging(0.98) TCGA-52-7812-01 2 220473486 220473486 G A STK11IP Silent p.Q606Q 0.29 TCGA-52-7812-01 2 231115770 231115770 G T SP140 Missense_Mutation p.G351W 0.27 tolerated(0.06) probably_damaging(0.99) TCGA-52-7812-01 2 232326651 232326651 C A NCL Missense_Mutation p.K71N 0.30 unknown(0) TCGA-52-7812-01 2 25170351 25170351 C A DNAJC27 3'UTR 0.23 TCGA-52-7812-01 2 26203415 26203415 C A KIF3C Nonsense_Mutation p.E458* 0.26 TCGA-52-7812-01 2 26203416 26203416 C A KIF3C Missense_Mutation p.M457I 0.26 benign(0.009) TCGA-52-7812-01 2 29135558 29135558 G A WDR43 Silent p.E196E 0.20 TCGA-52-7812-01 2 32108490 32108490 C A MEMO1 Nonsense_Mutation p.E208* 0.22 TCGA-52-7812-01 2 33952383 33952383 T C AC009499.1 Intron 0.15 TCGA-52-7812-01 2 44079518 44079518 G T ABCG8 Missense_Mutation p.R196L 0.26 tolerated(0.07) probably_damaging(0.999) TCGA-52-7812-01 2 44079519 44079519 G T ABCG8 Silent p.R196R 0.25 TCGA-52-7812-01 2 64176222 64176230 AGAATAAGT - VPS54 In_Frame_Del p.T360_S362del 0.29 TCGA-52-7812-01 2 65488427 65488427 C G ACTR2 Missense_Mutation p.A266G 0.18 deleterious(0.04) benign(0.179) TCGA-52-7812-01 2 71058267 71058267 G T CD207 Missense_Mutation p.P301T 0.19 tolerated(0.21) benign(0.001) TCGA-52-7812-01 2 74597130 74597130 C G DCTN1 Missense_Mutation p.E452Q 0.23 deleterious(0) probably_damaging(0.98) TCGA-52-7812-01 2 74906886 74906886 G T SEMA4F Silent p.G621G 0.40 TCGA-52-7812-01 2 86433407 86433407 G T MRPL35 Silent p.V74V 0.09 TCGA-52-7812-01 2 96992189 96992189 G A ITPRIPL1 5'UTR 0.41 TCGA-52-7812-01 3 10370471 10370471 C A ATP2B2 3'UTR 0.30 TCGA-52-7812-01 3 113376197 113376197 A T KIAA2018 Missense_Mutation p.H1444Q 0.20 probably_damaging(0.998) TCGA-52-7812-01 3 121341142 121341142 C A FBXO40 Missense_Mutation p.P289H 0.23 deleterious(0) probably_damaging(0.996) TCGA-52-7812-01 3 122264278 122264278 C G PARP9 Splice_Site p.X497_splice 0.16 TCGA-52-7812-01 3 130187892 130187892 T G COL6A5 Silent p.P2348P 0.09 TCGA-52-7812-01 3 132319797 132319797 C A ACKR4 Missense_Mutation p.P186T 0.12 tolerated(0.19) benign(0.006) TCGA-52-7812-01 3 13395051 13395060 TACCGGCTGC - NUP210 Splice_Site p.X874_splice 0.21 TCGA-52-7812-01 3 153905550 153905550 A G ARHGEF26 Missense_Mutation p.T522A 0.42 tolerated(1) benign(0.015) TCGA-52-7812-01 3 164906357 164906357 G C SLITRK3 Silent p.P754P 0.24 TCGA-52-7812-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.27 deleterious(0.02) probably_damaging(0.959) TCGA-52-7812-01 3 192516720 192516720 G C MB21D2 Missense_Mutation p.Q311E 0.20 tolerated(0.19) possibly_damaging(0.569) TCGA-52-7812-01 3 194081218 194081218 G A LRRC15 Silent p.L191L 0.26 TCGA-52-7812-01 3 27472820 27472820 C G SLC4A7 Missense_Mutation p.Q364H 0.38 tolerated(0.34) possibly_damaging(0.549) TCGA-52-7812-01 3 3116525 3116525 G A IL5RA Missense_Mutation p.P373S 0.23 deleterious(0) probably_damaging(1) TCGA-52-7812-01 3 42678499 42678499 A C NKTR Missense_Mutation p.K435Q 0.34 deleterious_low_confidence(0) unknown(0) TCGA-52-7812-01 3 431119 431119 C A CHL1 Missense_Mutation p.P811H 0.35 deleterious(0) probably_damaging(1) TCGA-52-7812-01 3 44598743 44598743 G T ZKSCAN7 Silent p.P68P 0.45 TCGA-52-7812-01 3 48622486 48622487 - A COL7A1 Frame_Shift_Ins p.G1320Wfs*40 0.32 TCGA-52-7812-01 3 49043276 49043276 A G P4HTM Silent p.A441A 0.38 TCGA-52-7812-01 3 49066712 49066712 G A IMPDH2 Silent p.F24F 0.45 TCGA-52-7812-01 3 51994647 51994647 C G PCBP4 Silent p.R50R 0.50 TCGA-52-7812-01 3 81627197 81627197 C A GBE1 Missense_Mutation p.M499I 0.90 deleterious(0.05) probably_damaging(0.994) TCGA-52-7812-01 3 97852369 97852369 A T OR5H1 Silent p.L276L 0.27 TCGA-52-7812-01 3 97887972 97887972 G T OR5H15 Silent p.R143R 0.19 TCGA-52-7812-01 4 1017708 1017708 G C FGFRL1 Silent p.R179R 0.45 TCGA-52-7812-01 4 121675743 121675743 C A PRDM5 Missense_Mutation p.D530Y 0.32 deleterious(0.01) possibly_damaging(0.836) TCGA-52-7812-01 4 144354859 144354859 G T GAB1 Nonsense_Mutation p.E195* 0.11 TCGA-52-7812-01 4 155242212 155242212 C A DCHS2 Missense_Mutation p.D992Y 0.31 deleterious(0.01) possibly_damaging(0.877) TCGA-52-7812-01 4 177650808 177650808 C T VEGFC Missense_Mutation p.M80I 0.24 tolerated(0.25) benign(0.034) TCGA-52-7812-01 4 20760513 20760513 C T KCNIP4 Missense_Mutation p.E97K 0.25 deleterious(0.02) benign(0.114) TCGA-52-7812-01 4 47951909 47951909 C T CNGA1 Silent p.E149E 0.28 TCGA-52-7812-01 4 57356758 57356758 C G SRP72 Silent p.T483T 0.16 TCGA-52-7812-01 4 70615446 70615446 T A SULT1B1 Missense_Mutation p.N123I 0.21 deleterious(0) possibly_damaging(0.478) TCGA-52-7812-01 4 71888278 71888278 G T DCK Splice_Site p.X134_splice 0.21 TCGA-52-7812-01 4 76711941 76711941 A G USO1 Missense_Mutation p.T413A 0.19 tolerated(0.09) benign(0.017) TCGA-52-7812-01 4 76927382 76927382 T C CXCL9 Missense_Mutation p.N37S 0.24 tolerated(1) benign(0.03) TCGA-52-7812-01 4 79432509 79432509 A C FRAS1 Missense_Mutation p.T3288P 0.18 probably_damaging(0.929) TCGA-52-7812-01 4 86863375 86863375 T A ARHGAP24 Missense_Mutation p.V183D 0.22 deleterious(0) probably_damaging(0.997) TCGA-52-7812-01 4 9784674 9784674 T A DRD5 Missense_Mutation p.F341I 0.35 deleterious(0) probably_damaging(1) TCGA-52-7812-01 4 98633868 98633868 T A STPG2 Silent p.P434P 0.27 TCGA-52-7812-01 5 101631680 101631680 T A SLCO4C1 Missense_Mutation p.Q96L 0.37 tolerated(0.21) benign(0.028) TCGA-52-7812-01 5 114483016 114483016 C A TRIM36 Missense_Mutation p.G125V 0.26 deleterious(0) probably_damaging(1) TCGA-52-7812-01 5 115783043 115783043 A T SEMA6A Missense_Mutation p.C787S 0.24 tolerated(0.68) possibly_damaging(0.857) TCGA-52-7812-01 5 131706054 131706054 C T SLC22A5 Silent p.T130T 0.20 TCGA-52-7812-01 5 137451355 137451355 T A NME5 3'UTR 0.29 TCGA-52-7812-01 5 137451356 137451356 C A NME5 3'UTR 0.29 TCGA-52-7812-01 5 140021350 140021350 A G TMCO6 Missense_Mutation p.Q100R 0.27 tolerated(0.08) probably_damaging(0.997) TCGA-52-7812-01 5 140554903 140554903 C G PCDHB7 3'UTR 0.23 TCGA-52-7812-01 5 140725259 140725259 G T PCDHGA3 Silent p.L553L 0.28 TCGA-52-7812-01 5 141024187 141024187 G A FCHSD1 Missense_Mutation p.P532L 0.23 tolerated(0.51) benign(0.044) TCGA-52-7812-01 5 145540036 145540036 C G LARS Missense_Mutation p.R203P 0.29 deleterious(0) probably_damaging(1) TCGA-52-7812-01 5 156918701 156918701 G A ADAM19 Silent p.L673L 0.36 TCGA-52-7812-01 5 170736687 170736687 C A TLX3 Missense_Mutation p.S106R 0.24 deleterious(0.05) benign(0.201) TCGA-52-7812-01 5 176295846 176295846 C G UNC5A Missense_Mutation p.T201R 0.13 tolerated(0.29) probably_damaging(0.947) TCGA-52-7812-01 5 32126674 32126674 G A GOLPH3 Silent p.L181L 0.29 TCGA-52-7812-01 5 5303687 5303687 C T ADAMTS16 Silent p.C998C 0.05 TCGA-52-7812-01 5 60188901 60188901 C A ERCC8 Intron 0.35 TCGA-52-7812-01 5 68462974 68462996 CTCGGCGTGCTGCGGCGGAACGG - CCNB1 5'UTR 0.15 TCGA-52-7812-01 5 70828173 70828173 A T BDP1 Silent p.I1937I 0.17 TCGA-52-7812-01 5 94275895 94275895 T C MCTP1 Missense_Mutation p.T356A 0.26 tolerated(0.14) benign(0.027) TCGA-52-7812-01 6 137482923 137482923 T C IL22RA2 5'UTR 0.10 TCGA-52-7812-01 6 151626957 151626957 G T AKAP12 Missense_Mutation p.D80Y 0.27 deleterious(0.03) benign(0.059) TCGA-52-7812-01 6 158591509 158591509 C T GTF2H5 5'UTR 0.36 TCGA-52-7812-01 6 26240935 26240935 G T HIST1H4F Missense_Mutation p.Q94H 0.29 deleterious(0.03) benign(0.227) TCGA-52-7812-01 6 30131812 30131812 G C TRIM15 Silent p.G117G 0.19 TCGA-52-7812-01 6 33235031 33235031 G C VPS52 Silent p.V353V 0.28 TCGA-52-7812-01 6 52268893 52268893 C T PAQR8 Silent p.L294L 0.24 TCGA-52-7812-01 6 56468757 56468757 C A DST Intron 0.19 TCGA-52-7812-01 6 80750367 80750367 C T TTK Silent p.L813L 0.36 TCGA-52-7812-01 6 82930381 82930381 T A IBTK Nonsense_Mutation p.K392* 0.36 TCGA-52-7812-01 6 89977809 89977809 C G GABRR2 Silent p.T173T 0.40 TCGA-52-7812-01 7 101713690 101713690 C A CUX1 Missense_Mutation p.D98E 0.13 tolerated(0.7) unknown(0) TCGA-52-7812-01 7 106524683 106524683 C A PIK3CG Missense_Mutation p.H948Q 0.19 deleterious(0) probably_damaging(0.993) TCGA-52-7812-01 7 106526616 106526616 G T PIK3CG Missense_Mutation p.G970V 0.37 deleterious(0) possibly_damaging(0.701) TCGA-52-7812-01 7 107215738 107215738 A T DUS4L Silent p.S154S 0.20 TCGA-52-7812-01 7 107406287 107406287 A C SLC26A3 3'UTR 0.19 TCGA-52-7812-01 7 130370098 130370098 C A TSGA13 5'UTR 0.44 TCGA-52-7812-01 7 138314820 138314820 C A SVOPL Silent p.R279R 0.20 TCGA-52-7812-01 7 142021085 142021085 G A TRBV5-1 Missense_Mutation p.G22E 0.22 tolerated(0.2) benign(0.162) TCGA-52-7812-01 7 142124323 142124323 G T TRBV6-8 Missense_Mutation p.S52Y 0.27 tolerated(1) benign(0) TCGA-52-7812-01 7 142149386 142149386 G T TRBV5-5 Missense_Mutation p.P3T 0.31 tolerated(0.83) possibly_damaging(0.869) TCGA-52-7812-01 7 143080290 143080290 G A ZYX Missense_Mutation p.E300K 0.09 tolerated(0.39) benign(0.194) TCGA-52-7812-01 7 143748130 143748130 C T OR2A5 Silent p.C212C 0.21 TCGA-52-7812-01 7 14378274 14378274 A G DGKB Missense_Mutation p.I664T 0.37 deleterious(0) probably_damaging(1) TCGA-52-7812-01 7 14622748 14622748 C A DGKB Missense_Mutation p.R484L 0.25 tolerated(0.06) possibly_damaging(0.61) TCGA-52-7812-01 7 148427322 148427322 C G CUL1 Missense_Mutation p.S36R 0.18 deleterious(0.01) possibly_damaging(0.58) TCGA-52-7812-01 7 150553591 150553591 C T AOC1 Silent p.I11I 0.44 TCGA-52-7812-01 7 150919638 150919638 C A ABCF2 Missense_Mutation p.A263S 0.38 deleterious(0.03) probably_damaging(0.94) TCGA-52-7812-01 7 154564596 154564596 C A DPP6 Silent p.G360G 0.20 TCGA-52-7812-01 7 18624956 18624956 C G HDAC9 Missense_Mutation p.D25E 0.22 deleterious(0.04) probably_damaging(0.998) TCGA-52-7812-01 7 27211421 27211421 G T HOXA10 3'UTR 0.29 TCGA-52-7812-01 7 45688315 45688315 G A ADCY1 Missense_Mutation p.C356Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-52-7812-01 7 47849132 47849132 A T PKD1L1 Missense_Mutation p.L2542H 0.21 deleterious(0) probably_damaging(0.992) TCGA-52-7812-01 7 48005013 48005013 C T HUS1 Silent p.V261V 0.11 TCGA-52-7812-01 7 75053411 75053411 G A POM121C Silent p.S323S 0.26 TCGA-52-7812-01 7 77256870 77256870 C T PTPN12 Missense_Mutation p.S625L 0.18 deleterious(0) probably_damaging(0.999) TCGA-52-7812-01 7 87179220 87179220 C T ABCB1 Missense_Mutation p.E501K 0.27 tolerated(0.66) benign(0.018) TCGA-52-7812-01 7 87445535 87445535 G A RUNDC3B Missense_Mutation p.E412K 0.26 tolerated(0.92) benign(0.028) TCGA-52-7812-01 8 104390321 104390321 C G CTHRC1 Missense_Mutation p.L147V 0.18 tolerated(0.56) benign(0.039) TCGA-52-7812-01 8 10465503 10465503 C A RP1L1 Missense_Mutation p.Q2035H 0.35 unknown(0) TCGA-52-7812-01 8 104709395 104709395 G A RIMS2 Silent p.K86K 0.22 TCGA-52-7812-01 8 11643509 11643509 G C NEIL2 Silent p.G242G 0.35 TCGA-52-7812-01 8 123964933 123964933 C T ZHX2 Missense_Mutation p.L395F 0.35 deleterious(0.01) probably_damaging(0.976) TCGA-52-7812-01 8 145059011 145059011 G T PARP10 Missense_Mutation p.P387T 0.26 deleterious(0.02) benign(0.005) TCGA-52-7812-01 8 145268018 145268018 T A MROH1 Intron 0.35 TCGA-52-7812-01 8 145947894 145947894 T A ZNF251 Missense_Mutation p.K384M 0.22 deleterious(0) possibly_damaging(0.881) TCGA-52-7812-01 8 17412082 17412082 A T SLC7A2 Missense_Mutation p.I397F 0.33 deleterious(0.02) benign(0.255) TCGA-52-7812-01 8 65528284 65528284 C G CYP7B1 Missense_Mutation p.E272Q 0.16 deleterious(0.03) probably_damaging(0.966) TCGA-52-7812-01 8 68942852 68942852 G C PREX2 Missense_Mutation p.E222Q 0.23 deleterious(0.02) probably_damaging(0.986) TCGA-52-7812-01 8 88885021 88885021 G T DCAF4L2 Silent p.S393S 0.37 TCGA-52-7812-01 8 88885796 88885796 A T DCAF4L2 Missense_Mutation p.L135Q 0.34 deleterious(0.01) probably_damaging(0.984) TCGA-52-7812-01 9 100692458 100692458 C A HEMGN Missense_Mutation p.D407Y 0.24 deleterious(0) benign(0.368) TCGA-52-7812-01 9 102590320 102590320 C A NR4A3 Intron 0.25 TCGA-52-7812-01 9 108151406 108151406 G T SLC44A1 3'UTR 0.22 TCGA-52-7812-01 9 113234485 113234485 A G SVEP1 Silent p.S906S 0.24 TCGA-52-7812-01 9 114804236 114804236 C T SUSD1 Silent p.S718S 0.28 TCGA-52-7812-01 9 126125287 126125287 G T CRB2 Missense_Mutation p.A80S 0.19 deleterious(0) unknown(0) TCGA-52-7812-01 9 136323081 136323081 G A ADAMTS13 Silent p.S1314S 0.23 TCGA-52-7812-01 9 139652402 139652402 C A LCN8 5'UTR 0.24 TCGA-52-7812-01 9 21015980 21015980 C T PTPLAD2 Silent p.V100V 0.40 TCGA-52-7812-01 9 35722861 35722861 G A TLN1 Silent p.F280F 0.58 TCGA-52-7812-01 9 36170446 36170446 G T CCIN Missense_Mutation p.R316L 0.64 deleterious(0.02) possibly_damaging(0.743) TCGA-52-7812-01 9 77386747 77386747 G C TRPM6 Silent p.L1136L 0.18 TCGA-52-7812-01 9 77448987 77448987 A T TRPM6 Nonsense_Mutation p.L199* 0.12 TCGA-52-7812-01 9 82335073 82335073 G T TLE4 Missense_Mutation p.R568L 0.31 deleterious(0) probably_damaging(0.998) TCGA-52-7812-01 9 8507400 8507400 A T PTPRD Silent p.P526P 0.54 TCGA-52-7812-01 X 106185835 106185835 C - MORC4 Frame_Shift_Del p.K762Nfs*2 0.24 TCGA-52-7812-01 X 114536556 114536556 G T LUZP4 Splice_Site p.X31_splice 0.51 TCGA-52-7812-01 X 128614736 128614736 C A SMARCA1 Missense_Mutation p.R795L 0.30 deleterious(0.03) possibly_damaging(0.817) TCGA-52-7812-01 X 129843219 129843219 G T ENOX2 Missense_Mutation p.A16E 0.42 deleterious_low_confidence(0.01) benign(0.007) TCGA-52-7812-01 X 130215647 130215647 G T ARHGAP36 Missense_Mutation p.G3V 0.60 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-52-7812-01 X 131218575 131218575 G A FRMD7 Silent p.I228I 0.46 TCGA-52-7812-01 X 35959492 35959492 T A CXorf22 Missense_Mutation p.I165N 0.38 deleterious(0) probably_damaging(0.996) TCGA-52-7812-01 X 47039833 47039833 T A RBM10 Missense_Mutation p.N392K 0.50 tolerated(0.21) benign(0.162) TCGA-52-7812-01 X 47039834 47039834 G T RBM10 Nonsense_Mutation p.E393* 0.50 TCGA-52-7812-01 X 54956596 54956596 C A TRO Missense_Mutation p.L1147I 0.60 tolerated_low_confidence(0.44) possibly_damaging(0.838) TCGA-52-7812-01 X 62898339 62898339 G A ARHGEF9 Silent p.R225R 0.31 TCGA-52-7812-01 X 91133983 91133983 C G PCDH11X Missense_Mutation p.T915R 0.42 tolerated(0.26) possibly_damaging(0.493) TCGA-52-7812-01 Y 14847981 14847981 T G USP9Y Missense_Mutation p.Y275D 0.48 deleterious(0) possibly_damaging(0.501) TCGA-52-7812-01 Y 9305928 9305928 C A TSPY1 Missense_Mutation p.P195H 0.19 deleterious(0) probably_damaging(0.992) TCGA-56-1622-01 10 11060024 11060024 C A CELF2 5'UTR 0.48 TCGA-56-1622-01 10 1230902 1230902 G T ADARB2 Missense_Mutation p.L648M 0.76 tolerated(0.07) benign(0.16) TCGA-56-1622-01 10 135438759 135438759 C G FRG2B Missense_Mutation p.M227I 0.67 deleterious(0.02) benign(0.007) TCGA-56-1622-01 10 27703066 27703066 C G PTCHD3 Silent p.S38S 0.42 TCGA-56-1622-01 10 323152 323152 T G DIP2C 3'UTR 0.84 TCGA-56-1622-01 10 45486409 45486409 A G RASSF4 Silent p.L233L 0.72 TCGA-56-1622-01 10 49381129 49381129 C G FRMPD2 Missense_Mutation p.R1028T 0.57 tolerated(0.21) benign(0.438) TCGA-56-1622-01 10 88835729 88835729 T C GLUD1 Missense_Mutation p.Y193C 0.84 deleterious(0) probably_damaging(0.999) TCGA-56-1622-01 11 100863462 100863462 G T TMEM133 3'UTR 0.22 TCGA-56-1622-01 11 100863463 100863463 G T TMEM133 3'UTR 0.23 TCGA-56-1622-01 11 118451966 118451966 G T ARCN1 Silent p.L3L 0.33 TCGA-56-1622-01 11 1253773 1253773 C A MUC5B Nonsense_Mutation p.S646* 0.65 TCGA-56-1622-01 11 126145236 126145236 G T FOXRED1 Missense_Mutation p.G216C 0.22 deleterious(0) probably_damaging(1) TCGA-56-1622-01 11 18194626 18194626 G C MRGPRX4 5'UTR 0.27 TCGA-56-1622-01 11 18497181 18497181 C T LDHAL6A Missense_Mutation p.S196L 0.77 deleterious(0.01) benign(0.42) TCGA-56-1622-01 11 31113001 31113001 T C DCDC1 Missense_Mutation p.I726V 0.48 tolerated(0.32) benign(0.01) TCGA-56-1622-01 11 48188971 48188971 A T PTPRJ 3'UTR 0.46 TCGA-56-1622-01 11 49179538 49179538 T C FOLH1 Missense_Mutation p.K500E 0.47 deleterious(0.02) possibly_damaging(0.766) TCGA-56-1622-01 11 4967983 4967983 G T OR51A4 Silent p.V116V 0.54 TCGA-56-1622-01 11 55563598 55563598 G T OR5D14 Silent p.V189V 0.43 TCGA-56-1622-01 11 55655539 55655539 G T TRIM51 Missense_Mutation p.R180I 0.38 deleterious(0.04) benign(0.077) TCGA-56-1622-01 11 55926908 55926908 C T OR8K5 Missense_Mutation p.E296K 0.35 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-56-1622-01 11 56019795 56019795 C A OR5T3 Silent p.T40T 0.40 TCGA-56-1622-01 11 57885969 57885969 G A OR9Q1 Intron 0.24 TCGA-56-1622-01 11 57958903 57958903 C A OR9Q2 Missense_Mutation p.P314H 0.19 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-56-1622-01 11 57958904 57958904 C A OR9Q2 Silent p.P314P 0.19 TCGA-56-1622-01 11 58714638 58714638 G T GLYATL1 Intron 0.20 TCGA-56-1622-01 11 61730083 61730083 C A BEST1 Missense_Mutation p.P426Q 0.58 deleterious(0.04) possibly_damaging(0.717) TCGA-56-1622-01 11 64726895 64726895 C T C11orf85 Splice_Site 0.59 TCGA-56-1622-01 11 65269098 65269099 - G MALAT1 RNA 0.22 TCGA-56-1622-01 11 65793910 65793910 C A CATSPER1 5'UTR 0.30 TCGA-56-1622-01 11 89531515 89531515 C A TRIM49 Missense_Mutation p.G381V 0.22 tolerated(0.54) possibly_damaging(0.515) TCGA-56-1622-01 12 105582189 105582189 A C APPL2 Missense_Mutation p.L505W 0.90 deleterious(0) probably_damaging(0.999) TCGA-56-1622-01 12 114397945 114397945 G T RBM19 Silent p.P86P 0.83 TCGA-56-1622-01 12 11546009 11546009 T G PRB2 Missense_Mutation p.K335Q 0.15 tolerated(1) unknown(0) TCGA-56-1622-01 12 122658483 122658483 G T IL31 Missense_Mutation p.H25N 0.84 deleterious(0.02) possibly_damaging(0.844) TCGA-56-1622-01 12 15822599 15822599 T A EPS8 Missense_Mutation p.K122M 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-56-1622-01 12 176411 176411 G A IQSEC3 Silent p.L121L 0.24 TCGA-56-1622-01 12 29649181 29649181 A G OVCH1 Missense_Mutation p.C72R 0.28 deleterious(0) probably_damaging(1) TCGA-56-1622-01 12 40757299 40757299 T C LRRK2 Missense_Mutation p.V2375A 0.87 tolerated(0.09) benign(0.297) TCGA-56-1622-01 12 6458148 6458148 C T SCNN1A Silent p.S566S 0.51 TCGA-56-1622-01 12 65461474 65461474 C T WIF1 Splice_Site p.X212_splice 0.53 TCGA-56-1622-01 12 70986093 70986093 C G PTPRB Silent p.L583L 0.45 TCGA-56-1622-01 12 8630137 8630137 C T CLEC6A 3'UTR 0.32 TCGA-56-1622-01 12 96292356 96292356 C T CCDC38 Missense_Mutation p.A175T 0.90 deleterious(0.04) probably_damaging(1) TCGA-56-1622-01 12 96661013 96661013 C A ELK3 3'UTR 0.84 TCGA-56-1622-01 13 110818651 110818651 C G COL4A1 Splice_Site p.X1317_splice 0.84 TCGA-56-1622-01 13 32783211 32783211 C G FRY Missense_Mutation p.L1414V 0.84 deleterious(0) possibly_damaging(0.728) TCGA-56-1622-01 13 35692566 35692566 A C NBEA Missense_Mutation p.H733P 0.77 deleterious(0) probably_damaging(0.998) TCGA-56-1622-01 13 46725138 46725138 C G LCP1 Missense_Mutation p.R272T 0.84 deleterious(0) probably_damaging(0.977) TCGA-56-1622-01 13 48953748 48953748 C T RB1 Missense_Mutation p.R451C 0.12 deleterious(0) probably_damaging(1) TCGA-56-1622-01 13 60566228 60566228 G A DIAPH3 Silent p.R406R 0.85 TCGA-56-1622-01 13 70514310 70514310 A C KLHL1 Silent p.L292L 0.33 TCGA-56-1622-01 14 100375748 100375748 G T EML1 Nonsense_Mutation p.G410* 0.42 TCGA-56-1622-01 14 104202520 104202520 A G PPP1R13B Silent p.G1017G 0.32 TCGA-56-1622-01 14 52520919 52520919 C A NID2 Silent p.L296L 0.40 TCGA-56-1622-01 14 95054021 95054021 C G SERPINA5 Missense_Mutation p.H108D 0.45 deleterious(0) probably_damaging(0.999) TCGA-56-1622-01 15 102346017 102346017 C T OR4F6 Missense_Mutation p.S32L 0.27 tolerated_low_confidence(0.08) benign(0.053) TCGA-56-1622-01 15 20876572 20876572 G C NBEAP1 RNA 0.08 TCGA-56-1622-01 15 22473340 22473340 C A IGHV4OR15-8 Missense_Mutation p.W5L 0.23 tolerated(0.11) benign(0.005) TCGA-56-1622-01 15 28459024 28459024 A T HERC2 Missense_Mutation p.L2217Q 0.75 possibly_damaging(0.896) TCGA-56-1622-01 15 30000933 30000933 T A TJP1 Missense_Mutation p.K1560N 0.82 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-56-1622-01 15 35044963 35044963 A G GJD2 Silent p.L228L 0.87 TCGA-56-1622-01 15 48460929 48460929 C A MYEF2 Missense_Mutation p.G90V 0.27 deleterious_low_confidence(0) benign(0.305) TCGA-56-1622-01 15 51828999 51828999 T C DMXL2 Missense_Mutation p.K560E 0.25 tolerated(0.14) possibly_damaging(0.769) TCGA-56-1622-01 15 54916021 54916021 G T UNC13C Missense_Mutation p.Q2076H 0.56 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-56-1622-01 15 63883009 63883009 G A USP3 Missense_Mutation p.G516E 0.23 tolerated_low_confidence(0.07) benign(0.193) TCGA-56-1622-01 15 68605181 68605181 T C ITGA11 Missense_Mutation p.Y968C 0.23 deleterious(0) possibly_damaging(0.89) TCGA-56-1622-01 16 20373796 20373796 G T PDILT Missense_Mutation p.A449E 0.44 deleterious(0) probably_damaging(1) TCGA-56-1622-01 16 2150202 2150202 T G PKD1 Missense_Mutation p.N3226T 0.76 probably_damaging(0.954) TCGA-56-1622-01 16 26147026 26147026 C T HS3ST4 Silent p.S276S 0.46 TCGA-56-1622-01 16 4407255 4407255 G A CORO7 Nonsense_Mutation p.Q867* 0.87 TCGA-56-1622-01 16 48121987 48121987 G T ABCC12 Nonsense_Mutation p.S1162* 0.51 TCGA-56-1622-01 16 55539402 55539402 A C MMP2 3'UTR 0.43 TCGA-56-1622-01 16 57918054 57918054 C T CNGB1 3'UTR 0.43 TCGA-56-1622-01 16 61689506 61689506 A T CDH8 Missense_Mutation p.L592M 0.38 deleterious(0.02) probably_damaging(0.977) TCGA-56-1622-01 16 65038624 65038624 C A CDH11 Missense_Mutation p.R50L 0.55 deleterious(0) possibly_damaging(0.552) TCGA-56-1622-01 16 68386243 68386258 GCACCTGGGGCCAGGT - PRMT7 Frame_Shift_Del p.H503Pfs*3 0.29 TCGA-56-1622-01 16 70293019 70293019 A G AARS Missense_Mutation p.L619P 0.37 deleterious(0) probably_damaging(0.999) TCGA-56-1622-01 16 76311604 76311604 A TT CNTNAP4 Missense_Mutation 0.40 TCGA-56-1622-01 16 81161404 81161404 G A PKD1L2 RNA 0.41 TCGA-56-1622-01 17 10214458 10214458 C T MYH13 Missense_Mutation p.E1540K 0.84 deleterious(0) benign(0.332) TCGA-56-1622-01 17 10447295 10447295 C A MYH2 Missense_Mutation p.R191L 0.74 deleterious(0.02) possibly_damaging(0.545) TCGA-56-1622-01 17 35921348 35921348 T G SYNRG Missense_Mutation p.K538Q 0.35 deleterious(0.03) possibly_damaging(0.814) TCGA-56-1622-01 17 44110445 44110445 C G KANSL1 Splice_Site p.X946_splice 0.50 TCGA-56-1622-01 17 49708874 49708874 G T CA10 3'UTR 0.48 TCGA-56-1622-01 17 61949454 61949454 G A CSH2 3'UTR 0.34 TCGA-56-1622-01 17 72305582 72305582 C A DNAI2 Intron 0.41 TCGA-56-1622-01 17 72443115 72443115 C T GPRC5C Missense_Mutation p.P470L 0.40 tolerated_low_confidence(0.52) benign(0.004) TCGA-56-1622-01 17 73702489 73702489 T G SAP30BP Missense_Mutation p.L272R 0.35 deleterious(0.03) possibly_damaging(0.877) TCGA-56-1622-01 17 7574017 7574017 C A TP53 Missense_Mutation p.R337L 0.78 deleterious(0.01) probably_damaging(0.914) TCGA-56-1622-01 17 76435203 76435203 G T DNAH17 Missense_Mutation p.A3911D 0.55 probably_damaging(0.962) TCGA-56-1622-01 18 30672775 30672775 T C CCDC178 Missense_Mutation p.I780V 0.85 tolerated(0.45) benign(0.003) TCGA-56-1622-01 18 34850747 34850747 G A CELF4 Silent p.G361G 0.80 TCGA-56-1622-01 18 47808818 47808818 C A CXXC1 3'UTR 0.97 TCGA-56-1622-01 18 59195329 59195329 G T CDH20 Missense_Mutation p.V383L 0.77 deleterious(0.04) benign(0.008) TCGA-56-1622-01 18 67563044 67563044 A G CD226 Missense_Mutation p.I207T 0.80 deleterious(0) probably_damaging(0.96) TCGA-56-1622-01 18 8825138 8825138 T C SOGA2 Silent p.G1210G 0.71 TCGA-56-1622-01 19 10572296 10572296 C T PDE4A Silent p.D520D 0.28 TCGA-56-1622-01 19 12256966 12256966 C A ZNF625 Missense_Mutation p.D89Y 0.49 deleterious(0.02) probably_damaging(0.996) TCGA-56-1622-01 19 13988533 13988533 G A NANOS3 Silent p.A157A 0.21 TCGA-56-1622-01 19 20728586 20728586 T G ZNF737 Missense_Mutation p.Q141H 0.28 tolerated(0.11) benign(0.139) TCGA-56-1622-01 19 38942422 38942422 G T RYR1 Missense_Mutation p.G381C 0.31 probably_damaging(1) TCGA-56-1622-01 19 39805146 39805146 C T LRFN1 Silent p.T277T 0.30 TCGA-56-1622-01 19 44661166 44661166 A G ZNF234 Missense_Mutation p.I333V 0.39 tolerated(0.26) probably_damaging(0.936) TCGA-56-1622-01 19 48878904 48878904 C A SYNGR4 Nonsense_Mutation p.C122* 0.52 TCGA-56-1622-01 19 6854071 6854071 G C VAV1 Missense_Mutation p.G816R 0.56 deleterious(0) probably_damaging(1) TCGA-56-1622-01 19 9061509 9061509 G T MUC16 Missense_Mutation p.P8646H 0.17 unknown(0) TCGA-56-1622-01 1 111857928 111857928 G A CHIA Silent p.Q117Q 0.31 TCGA-56-1622-01 1 12921337 12921337 C T PRAMEF2 Silent p.C376C 0.20 TCGA-56-1622-01 1 142713882 142713882 C A RP11-417J8.6 RNA 0.15 TCGA-56-1622-01 1 151732535 151732535 G C MRPL9 Silent p.P265P 0.49 TCGA-56-1622-01 1 152129212 152129212 G T RPTN Missense_Mutation p.H121Q 0.31 tolerated(0.14) benign(0.139) TCGA-56-1622-01 1 152283417 152283417 G C FLG Missense_Mutation p.D1315E 0.29 benign(0.417) TCGA-56-1622-01 1 152287908 152287908 A C FLG Missense_Mutation p.F9V 0.14 possibly_damaging(0.575) TCGA-56-1622-01 1 155921325 155921325 C T ARHGEF2 Splice_Site p.X737_splice 0.51 TCGA-56-1622-01 1 160465906 160465906 G T SLAMF6 Silent p.A109A 0.54 TCGA-56-1622-01 1 171548569 171548569 G T PRRC2C Missense_Mutation p.L2410F 0.20 probably_damaging(0.997) TCGA-56-1622-01 1 171548570 171548570 G T PRRC2C Missense_Mutation p.A2411S 0.21 possibly_damaging(0.876) TCGA-56-1622-01 1 176740254 176740254 C G PAPPA2 Missense_Mutation p.I1551M 0.27 deleterious(0.01) possibly_damaging(0.459) TCGA-56-1622-01 1 177915542 177915542 C T SEC16B Intron 0.85 TCGA-56-1622-01 1 178442279 178442279 C T RASAL2 Missense_Mutation p.R1250W 0.25 deleterious(0) probably_damaging(0.999) TCGA-56-1622-01 1 17991036 17991036 G A ARHGEF10L Nonsense_Mutation p.W985* 0.59 TCGA-56-1622-01 1 19180803 19180803 G A TAS1R2 Silent p.S387S 0.26 TCGA-56-1622-01 1 206634572 206634572 T C SRGAP2 Missense_Mutation p.F922S 0.61 tolerated_low_confidence(0.18) benign(0.098) TCGA-56-1622-01 1 214501018 214501018 G T SMYD2 Missense_Mutation p.G219V 0.22 deleterious(0.02) possibly_damaging(0.813) TCGA-56-1622-01 1 216017746 216017746 C - USH2A Frame_Shift_Del p.V3050Sfs*8 0.20 TCGA-56-1622-01 1 221053501 221053501 C T HLX Missense_Mutation p.P101L 0.17 deleterious_low_confidence(0) possibly_damaging(0.856) TCGA-56-1622-01 1 226567672 226567672 C T PARP1 Silent p.K498K 0.31 TCGA-56-1622-01 1 228363319 228363319 G T IBA57 3'UTR 0.60 TCGA-56-1622-01 1 229770893 229770893 G A URB2 Missense_Mutation p.G178D 0.25 tolerated(0.25) possibly_damaging(0.647) TCGA-56-1622-01 1 236154191 236154191 C A NID1 Missense_Mutation p.V975F 0.18 deleterious(0.01) benign(0.092) TCGA-56-1622-01 1 237777617 237777617 C T RYR2 Missense_Mutation p.T1730M 0.19 probably_damaging(0.98) TCGA-56-1622-01 1 240497231 240497231 C T FMN2 Silent p.L1543L 0.46 TCGA-56-1622-01 1 247695527 247695527 C A OR2C3 Missense_Mutation p.G96V 0.62 tolerated(0.21) benign(0.004) TCGA-56-1622-01 1 247875412 247875412 C A OR6F1 Missense_Mutation p.V216F 0.57 tolerated(0.08) possibly_damaging(0.698) TCGA-56-1622-01 1 247921568 247921568 C T OR1C1 Silent p.A47A 0.31 TCGA-56-1622-01 1 248201674 248201674 A T OR2L2 Silent p.L35L 0.61 TCGA-56-1622-01 1 248224524 248224524 C A OR2L3 Missense_Mutation p.P181T 0.45 deleterious(0.02) possibly_damaging(0.483) TCGA-56-1622-01 1 248616558 248616558 T A OR2T2 Missense_Mutation p.S154T 0.19 tolerated(0.08) probably_damaging(0.996) TCGA-56-1622-01 1 26801131 26801131 A T HMGN2 Silent p.A70A 0.22 TCGA-56-1622-01 1 38483404 38483404 G T UTP11L Missense_Mutation p.D64Y 0.39 deleterious(0) probably_damaging(0.998) TCGA-56-1622-01 1 44435860 44435860 T C DPH2 Missense_Mutation p.F5L 0.37 deleterious(0) possibly_damaging(0.593) TCGA-56-1622-01 1 55607343 55607344 - T USP24 Frame_Shift_Ins p.M899Nfs*19 0.34 TCGA-56-1622-01 1 71318491 71318491 C A PTGER3 3'UTR 0.37 TCGA-56-1622-01 1 7913405 7913405 G T UTS2 Missense_Mutation p.N29K 0.38 deleterious(0.03) possibly_damaging(0.558) TCGA-56-1622-01 1 89845989 89845989 A T GBP6 Missense_Mutation p.I224F 0.40 deleterious(0) probably_damaging(0.993) TCGA-56-1622-01 1 98293701 98293701 C A DPYD Missense_Mutation p.G68C 0.38 deleterious(0) possibly_damaging(0.832) TCGA-56-1622-01 20 2843947 2843947 G C VPS16 Missense_Mutation p.R460P 0.47 deleterious(0) probably_damaging(1) TCGA-56-1622-01 20 29623211 29623211 A T FRG1B Missense_Mutation p.H8L 0.02 tolerated(0.61) benign(0.016) TCGA-56-1622-01 20 42683148 42683148 G T TOX2 Silent p.L287L 0.56 TCGA-56-1622-01 20 44640921 44640921 C A MMP9 Missense_Mutation p.S381R 0.46 tolerated(0.9) benign(0.009) TCGA-56-1622-01 20 61386239 61386239 G C NTSR1 Splice_Site p.X306_splice 0.26 TCGA-56-1622-01 20 61869312 61869312 G A BIRC7 Missense_Mutation p.R136H 0.55 tolerated(0.54) benign(0.048) TCGA-56-1622-01 20 61981226 61981226 G T CHRNA4 Missense_Mutation p.R513S 0.27 tolerated(0.74) benign(0.003) TCGA-56-1622-01 20 62337709 62337709 C A ARFRP1 Missense_Mutation p.K88N 0.35 tolerated(0.06) probably_damaging(0.919) TCGA-56-1622-01 20 7980436 7980436 T A TMX4 Missense_Mutation p.E137V 0.64 deleterious(0) possibly_damaging(0.471) TCGA-56-1622-01 21 10908860 10908860 G A TPTE Silent p.Y495Y 0.18 TCGA-56-1622-01 21 11049531 11049531 C A BAGE2 RNA 0.08 TCGA-56-1622-01 21 15554171 15554171 G T LIPI Missense_Mutation p.P205H 0.31 deleterious(0) probably_damaging(1) TCGA-56-1622-01 21 19737474 19737474 G T TMPRSS15 Silent p.V252V 0.41 TCGA-56-1622-01 21 33678949 33678949 A G MRAP Splice_Site p.X36_splice 0.59 TCGA-56-1622-01 21 38115753 38115753 C T SIM2 Missense_Mutation p.S355F 0.86 deleterious(0.03) benign(0.035) TCGA-56-1622-01 21 39671448 39671448 G A KCNJ15 Missense_Mutation p.A89T 0.07 deleterious(0) probably_damaging(0.909) TCGA-56-1622-01 22 29538035 29538035 A G KREMEN1 Missense_Mutation p.I455V 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.526) TCGA-56-1622-01 22 40825653 40825653 C T MKL1 Silent p.K86K 0.27 TCGA-56-1622-01 22 41565527 41565527 T C EP300 Missense_Mutation p.L1398P 0.40 probably_damaging(1) TCGA-56-1622-01 22 51160645 51160645 C A SHANK3 Missense_Mutation p.R1478S 0.39 possibly_damaging(0.628) TCGA-56-1622-01 2 102460599 102460599 C T MAP4K4 Silent p.R353R 0.42 TCGA-56-1622-01 2 109398838 109398838 G T RANBP2 Missense_Mutation p.W3005C 0.35 deleterious(0) probably_damaging(1) TCGA-56-1622-01 2 112566543 112566543 T C ANAPC1 Silent p.E1271E 0.45 TCGA-56-1622-01 2 120221813 120221813 G A SCTR Silent p.R174R 0.49 TCGA-56-1622-01 2 120723183 120723183 G T PTPN4 Missense_Mutation p.K840N 0.33 tolerated(0.38) benign(0.024) TCGA-56-1622-01 2 162762167 162762167 A C SLC4A10 Silent p.S589S 0.44 TCGA-56-1622-01 2 166870302 166870302 C A SCN1A Missense_Mutation p.W1219C 0.46 deleterious(0) probably_damaging(0.998) TCGA-56-1622-01 2 166870303 166870303 C A SCN1A Missense_Mutation p.W1219L 0.45 deleterious(0.01) possibly_damaging(0.714) TCGA-56-1622-01 2 176829140 176829140 C T KIAA1715 Silent p.P151P 0.33 TCGA-56-1622-01 2 179456980 179456980 A T TTN Missense_Mutation p.L19884Q 0.40 TCGA-56-1622-01 2 179612491 179612491 A G TTN Intron 0.52 TCGA-56-1622-01 2 182780263 182780263 G A SSFA2 Silent p.E632E 0.36 TCGA-56-1622-01 2 189859285 189859285 G T COL3A1 Missense_Mutation p.G438C 0.34 unknown(0) TCGA-56-1622-01 2 190921798 190921798 T C MSTN 3'UTR 0.38 TCGA-56-1622-01 2 191792047 191792047 G A GLS Missense_Mutation p.V422M 0.38 tolerated(0.06) possibly_damaging(0.882) TCGA-56-1622-01 2 202547600 202547600 C A MPP4 Missense_Mutation p.G205V 0.43 deleterious(0) probably_damaging(1) TCGA-56-1622-01 2 206165256 206165256 T A PARD3B Missense_Mutation p.S668T 0.36 deleterious(0.03) possibly_damaging(0.765) TCGA-56-1622-01 2 219507362 219507362 C T ZNF142 Missense_Mutation p.A1293T 0.40 tolerated(0.06) possibly_damaging(0.787) TCGA-56-1622-01 2 241468618 241468618 C A ANKMY1 Silent p.S174S 0.44 TCGA-56-1622-01 2 30998886 30998886 C A CAPN13 Silent p.L99L 0.78 TCGA-56-1622-01 2 69172655 69172655 A T GKN2 Intron 0.38 TCGA-56-1622-01 2 71060081 71060081 A G CD207 Missense_Mutation p.C223R 0.50 deleterious(0) probably_damaging(1) TCGA-56-1622-01 2 74597355 74597355 C A DCTN1 Missense_Mutation p.E415D 0.38 deleterious(0.03) benign(0.338) TCGA-56-1622-01 2 79385837 79385837 C A REG3A Missense_Mutation p.K45N 0.28 tolerated(0.42) benign(0.056) TCGA-56-1622-01 3 105377809 105377809 G A CBLB 3'UTR 0.75 TCGA-56-1622-01 3 113955305 113955305 C T ZNF80 Missense_Mutation p.R206Q 0.81 tolerated(0.74) benign(0.053) TCGA-56-1622-01 3 128757707 128757707 C T EFCC1 Silent p.L542L 0.89 TCGA-56-1622-01 3 138665365 138665378 ATCGCCATGGCGAT - FOXL2 Frame_Shift_Del p.I63Pfs*28 0.87 TCGA-56-1622-01 3 143551032 143551032 A G SLC9A9 Silent p.A69A 0.31 TCGA-56-1622-01 3 154802012 154802012 A T MME Missense_Mutation p.K19M 0.84 deleterious(0.03) possibly_damaging(0.479) TCGA-56-1622-01 3 185184616 185184616 G A MAP3K13 Missense_Mutation p.R503H 0.07 deleterious(0) probably_damaging(0.994) TCGA-56-1622-01 3 19492675 19492675 G C KCNH8 Missense_Mutation p.R535P 0.83 deleterious(0) probably_damaging(1) TCGA-56-1622-01 3 33626408 33626418 ACCAGCTGAAC - CLASP2 Splice_Site p.X691_splice 0.75 TCGA-56-1622-01 3 38805051 38805051 T G SCN10A Silent p.S212S 0.86 TCGA-56-1622-01 3 40498834 40498834 T C RPL14 5'UTR 0.78 TCGA-56-1622-01 3 93779797 93779797 C T DHFRL1 Missense_Mutation p.D187N 0.80 tolerated_low_confidence(0.18) benign(0.002) TCGA-56-1622-01 4 106359127 106359127 C T PPA2 Missense_Mutation p.V170I 0.73 tolerated(0.07) benign(0.076) TCGA-56-1622-01 4 120221760 120221761 CG - C4orf3 Frame_Shift_Del p.A110Gfs*9 0.28 TCGA-56-1622-01 4 120474846 120474846 T C PDE5A Missense_Mutation p.M419V 0.40 tolerated(0.53) possibly_damaging(0.823) TCGA-56-1622-01 4 151509200 151509200 C A LRBA Missense_Mutation p.K2121N 0.37 deleterious(0.02) benign(0.044) TCGA-56-1622-01 4 156847099 156847099 T C CTSO 3'UTR 0.53 TCGA-56-1622-01 4 16504484 16504484 C A LDB2 Missense_Mutation p.V302L 0.10 deleterious(0.01) benign(0.049) TCGA-56-1622-01 4 176622884 176622885 - C GPM6A Frame_Shift_Ins p.I25Hfs*25 0.49 TCGA-56-1622-01 4 20852181 20852181 G C KCNIP4 Nonsense_Mutation p.Y91* 0.65 TCGA-56-1622-01 4 22389781 22389781 G A GPR125 Silent p.H1171H 0.16 TCGA-56-1622-01 4 435561 435561 C T ZNF721 Missense_Mutation p.G899S 0.18 deleterious(0.03) probably_damaging(0.943) TCGA-56-1622-01 4 46736926 46736926 T - COX7B2 3'UTR 0.34 TCGA-56-1622-01 4 47428170 47428170 C A GABRB1 3'UTR 0.50 TCGA-56-1622-01 4 47605631 47605631 A G CORIN Silent p.H865H 0.49 TCGA-56-1622-01 4 78695839 78695839 C A CNOT6L Missense_Mutation p.W53C 0.53 deleterious(0) probably_damaging(0.968) TCGA-56-1622-01 5 10290792 10290792 T C CMBL Missense_Mutation p.E28G 0.29 tolerated(0.14) benign(0.047) TCGA-56-1622-01 5 10450186 10450186 G C ROPN1L Missense_Mutation p.W126C 0.29 deleterious(0) probably_damaging(0.995) TCGA-56-1622-01 5 136961565 136961565 G A KLHL3 Missense_Mutation p.L538F 0.73 tolerated(0.09) benign(0.157) TCGA-56-1622-01 5 140475752 140475752 C A PCDHB2 Missense_Mutation p.L460M 0.22 tolerated_low_confidence(0.11) possibly_damaging(0.777) TCGA-56-1622-01 5 140573497 140573497 C A PCDHB10 Missense_Mutation p.L458M 0.69 tolerated_low_confidence(0.11) possibly_damaging(0.47) TCGA-56-1622-01 5 156378594 156378594 C T TIMD4 Missense_Mutation p.S203N 0.80 tolerated(0.1) benign(0.366) TCGA-56-1622-01 5 19483655 19483655 G C CDH18 Missense_Mutation p.T546R 0.31 deleterious(0) possibly_damaging(0.562) TCGA-56-1622-01 5 24535924 24535924 A G CDH10 Silent p.S178S 0.39 TCGA-56-1622-01 5 35921087 35921087 T C CAPSL Missense_Mutation p.R46G 0.38 deleterious(0) probably_damaging(0.954) TCGA-56-1622-01 5 36114583 36114583 C G LMBRD2 Missense_Mutation p.G528A 0.43 deleterious(0.02) possibly_damaging(0.822) TCGA-56-1622-01 5 41052595 41052595 G T MROH2B Missense_Mutation p.S401Y 0.44 tolerated(0.17) benign(0.187) TCGA-56-1622-01 5 70931170 70931170 G T MCCC2 Intron 0.85 TCGA-56-1622-01 6 100895281 100895281 C G SIM1 Missense_Mutation p.K287N 0.45 deleterious(0.01) probably_damaging(1) TCGA-56-1622-01 6 135811852 135811852 C G AHI1 Missense_Mutation p.R15P 0.47 deleterious(0) probably_damaging(0.952) TCGA-56-1622-01 6 152718077 152718077 A G SYNE1 Silent p.L2463L 0.55 TCGA-56-1622-01 6 26056542 26056542 G A HIST1H1C Missense_Mutation p.P39S 0.32 tolerated(1) benign(0.06) TCGA-56-1622-01 6 26056543 26056543 G A HIST1H1C Silent p.P38P 0.32 TCGA-56-1622-01 6 26446185 26446185 G T BTN3A3 Silent p.L229L 0.52 TCGA-56-1622-01 6 27835194 27835194 C A HIST1H1B Silent p.A38A 0.56 TCGA-56-1622-01 6 29640508 29640508 C A ZFP57 Missense_Mutation p.R460S 0.34 tolerated(0.16) benign(0.217) TCGA-56-1622-01 6 30619233 30619233 G A C6orf136 Missense_Mutation p.E433K 0.52 tolerated(0.07) benign(0.428) TCGA-56-1622-01 6 32372966 32372966 C T BTNL2 Missense_Mutation p.M59I 0.41 tolerated(0.18) benign(0.14) TCGA-56-1622-01 6 39881098 39881098 G T MOCS1 Silent p.P240P 0.20 TCGA-56-1622-01 6 45405763 45405763 A C RUNX2 Silent p.T220T 0.38 TCGA-56-1622-01 6 46135373 46135373 T A ENPP5 Silent p.S209S 0.52 TCGA-56-1622-01 6 56468740 56468740 C A DST Intron 0.38 TCGA-56-1622-01 6 70386017 70386017 T C LMBRD1 3'UTR 0.47 TCGA-56-1622-01 7 148801240 148801240 T C ZNF425 Missense_Mutation p.M575V 0.38 tolerated(1) benign(0) TCGA-56-1622-01 7 151962204 151962204 C A KMT2C Missense_Mutation p.G368V 0.07 probably_damaging(1) TCGA-56-1622-01 7 155301605 155301605 C A CNPY1 Missense_Mutation p.R43I 0.86 tolerated(0.08) possibly_damaging(0.765) TCGA-56-1622-01 7 21469180 21469180 G C SP4 Missense_Mutation p.G133R 0.79 tolerated(0.59) benign(0.126) TCGA-56-1622-01 7 24789414 24789414 T A DFNA5 Splice_Site 0.81 TCGA-56-1622-01 7 29966073 29966073 C A SCRN1 Missense_Mutation p.D381Y 0.83 tolerated(0.05) benign(0.429) TCGA-56-1622-01 7 48285534 48285534 C A ABCA13 Silent p.S522S 0.89 TCGA-56-1622-01 7 57188389 57188389 C A ZNF479 Nonsense_Mutation p.E245* 0.61 TCGA-56-1622-01 7 6836359 6836359 C A RSPH10B2 Silent p.A798A 0.70 TCGA-56-1622-01 7 71130455 71130455 G C WBSCR17 Missense_Mutation p.E380D 0.40 deleterious(0.02) benign(0.001) TCGA-56-1622-01 7 72683346 72683346 T C GTF2IRD2P1 RNA 0.37 TCGA-56-1622-01 7 73246311 73246311 A G CLDN4 3'UTR 0.35 TCGA-56-1622-01 7 76058686 76058686 G A ZP3 Intron 0.38 TCGA-56-1622-01 7 82455955 82455955 C T PCLO Missense_Mutation p.V4789M 0.31 unknown(0) TCGA-56-1622-01 7 86509717 86509717 T A KIAA1324L 3'UTR 0.42 TCGA-56-1622-01 7 88965803 88965803 G T ZNF804B Missense_Mutation p.M1169I 0.37 deleterious(0.01) benign(0.168) TCGA-56-1622-01 7 88965804 88965804 C T ZNF804B Nonsense_Mutation p.Q1170* 0.37 TCGA-56-1622-01 7 99063780 99063780 T A ATP5J2 5'UTR 0.47 TCGA-56-1622-01 7 99457596 99457596 G A CYP3A43 Missense_Mutation p.A337T 0.44 tolerated(0.44) benign(0.011) TCGA-56-1622-01 8 105393524 105393524 C A DPYS Missense_Mutation p.V488L 0.92 deleterious(0) probably_damaging(0.966) TCGA-56-1622-01 8 116631873 116631873 T A TRPS1 Missense_Mutation p.D151V 0.34 deleterious_low_confidence(0) possibly_damaging(0.842) TCGA-56-1622-01 8 116631874 116631874 C A TRPS1 Missense_Mutation p.D151Y 0.34 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-56-1622-01 8 125551427 125551427 A G NDUFB9 5'UTR 0.44 TCGA-56-1622-01 8 139164914 139164914 G T FAM135B Missense_Mutation p.Q602K 0.92 tolerated(0.37) benign(0.011) TCGA-56-1622-01 8 139164915 139164915 G T FAM135B Missense_Mutation p.H601Q 0.93 tolerated(0.35) benign(0.003) TCGA-56-1622-01 8 139165094 139165094 C A FAM135B Missense_Mutation p.G542C 0.96 tolerated(0.17) benign(0.033) TCGA-56-1622-01 8 139610959 139610959 T C COL22A1 Intron 0.95 TCGA-56-1622-01 8 144773301 144773302 TG - ZNF707 Frame_Shift_Del p.L25Rfs*44 0.21 TCGA-56-1622-01 8 19362938 19362938 G C CSGALNACT1 Silent p.G136G 0.84 TCGA-56-1622-01 8 39627070 39627070 A G ADAM2 Silent p.F351F 0.33 TCGA-56-1622-01 8 86193700 86193700 A G CA13 3'UTR 0.32 TCGA-56-1622-01 8 96070046 96070046 G C NDUFAF6 Missense_Mutation p.E295Q 0.29 tolerated(0.11) benign(0.199) TCGA-56-1622-01 9 107535353 107535353 A T NIPSNAP3B Nonstop_Mutation p.*248Lext*18 0.78 TCGA-56-1622-01 9 107560766 107560766 T A ABCA1 Missense_Mutation p.H1686L 0.87 deleterious(0.01) probably_damaging(0.962) TCGA-56-1622-01 9 116082637 116082637 C G WDR31 Silent p.T260T 0.81 TCGA-56-1622-01 9 123903707 123903707 G A CNTRL Silent p.Q844Q 0.89 TCGA-56-1622-01 9 125240093 125240093 G A OR1J1 Missense_Mutation p.T38M 0.06 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-56-1622-01 9 130106616 130106616 C A GARNL3 Missense_Mutation p.Q452K 0.85 deleterious(0) benign(0.188) TCGA-56-1622-01 9 131337068 131337068 G T SPTAN1 Missense_Mutation p.D160Y 0.86 deleterious(0) probably_damaging(0.964) TCGA-56-1622-01 9 21186936 21186936 G T IFNA4 3'UTR 0.76 TCGA-56-1622-01 9 35295836 35295836 C A UNC13B Missense_Mutation p.Q224K 0.79 tolerated_low_confidence(0.18) benign(0.001) TCGA-56-1622-01 9 35825345 35825345 A T FAM221B Silent p.P208P 0.70 TCGA-56-1622-01 X 107225170 107225170 A G TEX13B Missense_Mutation p.V63A 0.91 tolerated(1) benign(0.021) TCGA-56-1622-01 X 119760819 119760819 C T C1GALT1C1 Missense_Mutation p.R68Q 0.89 tolerated(0.08) benign(0.03) TCGA-56-1622-01 X 1325342 1325342 G T CRLF2 Silent p.R111R 0.37 TCGA-56-1622-01 X 144905786 144905786 G C SLITRK2 Missense_Mutation p.E615Q 0.94 tolerated(0.07) possibly_damaging(0.601) TCGA-56-1622-01 X 155003826 155003826 G T SPRY3 Missense_Mutation p.R98M 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-56-1622-01 X 17745612 17745612 C T NHS Missense_Mutation p.P1108L 0.88 deleterious(0.03) benign(0.018) TCGA-56-1622-01 X 37642781 37642781 G C CYBB Silent p.L60L 0.83 TCGA-56-1622-01 X 44703624 44703624 C T DUSP21 Silent p.Y82Y 0.87 TCGA-56-1622-01 X 54784798 54784798 C T ITIH6 Missense_Mutation p.G570E 0.93 tolerated(0.2) benign(0.007) TCGA-56-1622-01 X 67938352 67938352 C A STARD8 Missense_Mutation p.D532E 0.98 tolerated(0.36) benign(0.012) TCGA-56-1622-01 X 91873458 91873458 G T PCDH11X Missense_Mutation p.R1188L 0.85 deleterious_low_confidence(0.05) benign(0) TCGA-56-5897-01 10 75567463 75567463 G A NDST2 Silent p.T228T 0.08 TCGA-56-5897-01 10 89685281 89685281 C G PTEN Nonsense_Mutation p.S59* 0.17 TCGA-56-5897-01 10 96745806 96745806 T C CYP2C9 Missense_Mutation p.I389T 0.15 tolerated(0.77) benign(0.004) TCGA-56-5897-01 10 96745813 96745813 G C CYP2C9 Silent p.L391L 0.17 TCGA-56-5897-01 11 36248918 36248918 G A LDLRAD3 Silent p.A246A 0.06 TCGA-56-5897-01 11 46760975 46760975 T C F2 3'UTR 0.08 TCGA-56-5897-01 11 5254010 5254010 C T HBD 3'Flank 0.19 TCGA-56-5897-01 11 55587196 55587196 G T OR5D18 Missense_Mutation p.V31F 0.14 deleterious(0.03) benign(0.029) TCGA-56-5897-01 11 55703274 55703274 G T OR5I1 Silent p.L201L 0.18 TCGA-56-5897-01 11 6239789 6239789 C G FAM160A2 Silent p.T492T 0.12 TCGA-56-5897-01 12 109654654 109654654 T A ACACB Missense_Mutation p.S1165T 0.11 tolerated(0.65) benign(0.012) TCGA-56-5897-01 12 119617441 119617441 G A HSPB8 Silent p.E108E 0.17 TCGA-56-5897-01 12 12311774 12311774 C A LRP6 Missense_Mutation p.R927M 0.20 deleterious(0.03) benign(0.082) TCGA-56-5897-01 12 14613896 14613896 C T ATF7IP Missense_Mutation p.P876S 0.11 tolerated_low_confidence(0.49) unknown(0) TCGA-56-5897-01 12 274629 274629 C G IQSEC3 Missense_Mutation p.S913R 0.08 deleterious(0) benign(0.024) TCGA-56-5897-01 12 3043692 3043692 G A TULP3 Missense_Mutation p.A297T 0.12 tolerated(0.19) benign(0.014) TCGA-56-5897-01 12 39947745 39947745 T G ABCD2 Missense_Mutation p.K731T 0.15 tolerated_low_confidence(0.08) benign(0.141) TCGA-56-5897-01 12 49437450 49437450 G C KMT2D Nonsense_Mutation p.S1812* 0.10 TCGA-56-5897-01 12 54109071 54109071 T C CALCOCO1 Missense_Mutation p.I433M 0.13 tolerated(0.33) possibly_damaging(0.739) TCGA-56-5897-01 12 6669272 6669272 G C NOP2 Missense_Mutation p.S627C 0.14 deleterious(0.01) benign(0.353) TCGA-56-5897-01 12 7177174 7177174 G A C1S Missense_Mutation p.R429K 0.15 tolerated(0.33) benign(0) TCGA-56-5897-01 12 78513113 78513113 G A NAV3 Missense_Mutation p.G1046E 0.20 deleterious(0.02) probably_damaging(1) TCGA-56-5897-01 12 85547826 85547826 G A LRRIQ1 Silent p.L1558L 0.18 TCGA-56-5897-01 13 31231868 31231868 G C USPL1 Missense_Mutation p.D552H 0.05 tolerated(0.33) benign(0.004) TCGA-56-5897-01 14 23549781 23549781 T G ACIN1 Silent p.R313R 0.08 TCGA-56-5897-01 14 31382827 31382827 G A STRN3 Missense_Mutation p.S426L 0.05 deleterious(0.05) benign(0.42) TCGA-56-5897-01 14 66136158 66136158 A T FUT8 Silent p.T265T 0.07 TCGA-56-5897-01 15 26825481 26825481 C A GABRB3 Missense_Mutation p.V223F 0.12 deleterious(0.01) probably_damaging(0.949) TCGA-56-5897-01 15 32929036 32929036 A G ARHGAP11A Missense_Mutation p.I688V 0.18 tolerated(0.45) benign(0.004) TCGA-56-5897-01 15 86122914 86122914 G A AKAP13 Missense_Mutation p.A539T 0.24 tolerated_low_confidence(0.07) possibly_damaging(0.766) TCGA-56-5897-01 15 90030051 90030051 T C RHCG Missense_Mutation p.Y117C 0.39 tolerated(0.07) benign(0.013) TCGA-56-5897-01 16 12136788 12136788 C G SNX29 Silent p.L94L 0.14 TCGA-56-5897-01 16 68293349 68293349 A G PLA2G15 Missense_Mutation p.Y343C 0.21 tolerated(0.1) possibly_damaging(0.84) TCGA-56-5897-01 16 72166725 72166725 C G PMFBP1 Missense_Mutation p.E457Q 0.19 tolerated(0.06) possibly_damaging(0.888) TCGA-56-5897-01 16 89763976 89763976 C - SPATA2L Frame_Shift_Del p.R347Sfs*250 0.12 TCGA-56-5897-01 17 10307790 10307790 C A MYH8 Nonsense_Mutation p.E849* 0.11 TCGA-56-5897-01 17 1939277 1939277 G A DPH1 Missense_Mutation p.E103K 0.18 deleterious(0.02) benign(0.076) TCGA-56-5897-01 17 27028597 27028597 C G SUPT6H Missense_Mutation p.S1712C 0.06 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-56-5897-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.19 TCGA-56-5897-01 18 19203843 19203843 C G SNRPD1 Missense_Mutation p.L76V 0.24 deleterious(0.01) possibly_damaging(0.467) TCGA-56-5897-01 18 22057388 22057388 G T HRH4 Missense_Mutation p.W345C 0.14 deleterious(0) probably_damaging(1) TCGA-56-5897-01 18 31463290 31463290 G T NOL4 Silent p.I547I 0.08 TCGA-56-5897-01 19 12244329 12244329 C T ZNF20 Silent p.V224V 0.22 TCGA-56-5897-01 19 17384808 17384808 T G BABAM1 Missense_Mutation p.V147G 0.07 deleterious(0) probably_damaging(0.994) TCGA-56-5897-01 19 40540887 40540887 G A ZNF780B Nonsense_Mutation p.Q627* 0.11 TCGA-56-5897-01 19 40827975 40827975 A C C19orf47 Silent p.L361L 0.26 TCGA-56-5897-01 19 45490529 45490529 G T CLPTM1 Nonsense_Mutation p.E296* 0.11 TCGA-56-5897-01 19 50412425 50412425 T C NUP62 Missense_Mutation p.I214V 0.07 tolerated(0.54) benign(0) TCGA-56-5897-01 19 55708712 55708712 G A PTPRH Missense_Mutation p.P588L 0.20 probably_damaging(0.996) TCGA-56-5897-01 19 6684439 6684439 G A C3 Nonsense_Mutation p.Q1378* 0.11 TCGA-56-5897-01 1 114680442 114680442 C T SYT6 Missense_Mutation p.R164H 0.10 deleterious(0.03) possibly_damaging(0.791) TCGA-56-5897-01 1 14109273 14109273 G C PRDM2 Missense_Mutation p.L1661F 0.14 unknown(0) TCGA-56-5897-01 1 158549354 158549354 A T OR10X1 Silent p.G112G 0.20 TCGA-56-5897-01 1 15956921 15956921 G C DDI2 Missense_Mutation p.E124Q 0.15 tolerated(0.24) benign(0.128) TCGA-56-5897-01 1 178426894 178426894 C G RASAL2 Missense_Mutation p.Q823E 0.11 tolerated(0.11) possibly_damaging(0.466) TCGA-56-5897-01 1 207139122 207139122 C A FCAMR Missense_Mutation p.R84L 0.24 tolerated(0.69) benign(0.003) TCGA-56-5897-01 1 227152766 227152766 C G ADCK3 Missense_Mutation p.F81L 0.17 tolerated_low_confidence(0.39) benign(0.297) TCGA-56-5897-01 1 34190220 34190220 C T CSMD2 Silent p.A887A 0.13 TCGA-56-5897-01 20 44523469 44523469 A G CTSA Missense_Mutation p.K311E 0.09 tolerated(0.8) benign(0) TCGA-56-5897-01 21 19715877 19715877 A G TMPRSS15 Silent p.Y458Y 0.08 TCGA-56-5897-01 21 38593815 38593815 T C DSCR3 3'Flank 0.08 TCGA-56-5897-01 22 16256566 16256566 G T POTEH 3'UTR 0.08 TCGA-56-5897-01 22 24036515 24036515 C G RGL4 Intron 0.29 TCGA-56-5897-01 22 37196867 37196867 T A PVALB 3'UTR 0.14 TCGA-56-5897-01 22 50717382 50717382 T A PLXNB2 Missense_Mutation p.N1483I 0.32 deleterious(0) probably_damaging(1) TCGA-56-5897-01 22 51019077 51019077 C T CHKB Silent p.Q198Q 0.09 TCGA-56-5897-01 2 159477760 159477760 A G PKP4 Missense_Mutation p.R144G 0.08 tolerated(0.05) benign(0.008) TCGA-56-5897-01 2 178098810 178098810 C G NFE2L2 Missense_Mutation p.E79Q 0.16 deleterious(0) probably_damaging(1) TCGA-56-5897-01 2 190728905 190728905 C T PMS1 Missense_Mutation p.H765Y 0.05 deleterious(0.02) benign(0.12) TCGA-56-5897-01 2 192550416 192550416 A G NABP1 Silent p.L179L 0.12 TCGA-56-5897-01 2 42935192 42935192 G C MTA3 Missense_Mutation p.E434Q 0.09 tolerated(0.44) benign(0.173) TCGA-56-5897-01 3 132056300 132056300 T C ACPP Silent p.L153L 0.29 TCGA-56-5897-01 3 157099020 157099020 C T VEPH1 Missense_Mutation p.R351H 0.08 deleterious(0) possibly_damaging(0.893) TCGA-56-5897-01 3 179593213 179593213 T C PEX5L Silent p.R186R 0.29 TCGA-56-5897-01 3 38739099 38739099 A G SCN10A Missense_Mutation p.M1871T 0.21 tolerated(0.07) benign(0.001) TCGA-56-5897-01 3 49688345 49688345 G A BSN Missense_Mutation p.E607K 0.10 unknown(0) TCGA-56-5897-01 3 49689252 49689252 G A BSN Missense_Mutation p.E755K 0.14 unknown(0) TCGA-56-5897-01 3 52097279 52097279 C G LINC00696 Missense_Mutation p.E97Q 0.05 unknown(0) TCGA-56-5897-01 4 111397798 111397798 C T ENPEP Silent p.D76D 0.14 TCGA-56-5897-01 4 114209638 114209638 C A ANK2 Missense_Mutation p.T758N 0.17 probably_damaging(1) TCGA-56-5897-01 4 186318030 186318030 C T ANKRD37 5'UTR 0.09 TCGA-56-5897-01 4 189067976 189067976 C A TRIML1 Missense_Mutation p.T286K 0.13 tolerated(0.57) benign(0.193) TCGA-56-5897-01 4 46067426 46067426 C T GABRG1 Missense_Mutation p.R166H 0.11 deleterious(0) possibly_damaging(0.756) TCGA-56-5897-01 5 115177356 115177356 T C ATG12 5'UTR 0.07 TCGA-56-5897-01 5 132426993 132426993 C G HSPA4 Missense_Mutation p.S496C 0.06 deleterious(0) probably_damaging(0.979) TCGA-56-5897-01 5 35988612 35988612 G C UGT3A1 Missense_Mutation p.L46V 0.07 deleterious(0) probably_damaging(0.999) TCGA-56-5897-01 5 36049476 36049476 G C UGT3A2 Missense_Mutation p.Q120E 0.10 tolerated(0.07) benign(0.403) TCGA-56-5897-01 5 66391439 66391439 G A MAST4 Missense_Mutation p.R283H 0.27 probably_damaging(0.999) TCGA-56-5897-01 5 80369249 80369249 G T RASGRF2 Missense_Mutation p.V289F 0.15 deleterious(0) possibly_damaging(0.866) TCGA-56-5897-01 6 110107533 110107533 G C FIG4 Missense_Mutation p.L659F 0.05 tolerated(0.25) benign(0.024) TCGA-56-5897-01 6 117715339 117715339 T A ROS1 Missense_Mutation p.I384F 0.08 deleterious(0) probably_damaging(0.927) TCGA-56-5897-01 6 124604183 124604183 C A NKAIN2 Missense_Mutation p.F29L 0.14 deleterious(0) possibly_damaging(0.814) TCGA-56-5897-01 6 132874559 132874559 G T TAAR8 Missense_Mutation p.S243I 0.15 deleterious(0.02) benign(0.363) TCGA-56-5897-01 6 132892023 132892023 G C TAAR6 Missense_Mutation p.G188A 0.16 deleterious(0) probably_damaging(0.971) TCGA-56-5897-01 6 160560878 160560878 G T SLC22A1 Missense_Mutation p.V419F 0.12 deleterious(0.03) benign(0.06) TCGA-56-5897-01 6 160908400 160908400 C A LPAL2 RNA 0.12 TCGA-56-5897-01 6 24467162 24467162 C - GPLD1 Frame_Shift_Del p.G220Vfs*4 0.18 TCGA-56-5897-01 6 26124149 26124149 T A HIST1H2BC 5'Flank 0.13 TCGA-56-5897-01 6 29394399 29394399 T A OR11A1 3'UTR 0.43 TCGA-56-5897-01 6 32137188 32137188 C A AGPAT1 Silent p.T239T 0.15 TCGA-56-5897-01 6 56494056 56494056 A T DST Silent p.I952I 0.07 TCGA-56-5897-01 6 72806810 72806810 G T RIMS1 Missense_Mutation p.C135F 0.20 deleterious(0) probably_damaging(0.992) TCGA-56-5897-01 6 74304842 74304842 T C SLC17A5 Silent p.V482V 0.16 TCGA-56-5897-01 7 100491272 100491272 C - ACHE Frame_Shift_Del p.S195Afs*34 0.27 TCGA-56-5897-01 7 107198509 107198509 G C COG5 Missense_Mutation p.S80C 0.18 tolerated(0.23) benign(0.099) TCGA-56-5897-01 7 128630242 128630242 C A TNPO3 Intron 0.17 TCGA-56-5897-01 7 148863259 148863259 G T ZNF398 Missense_Mutation p.A144S 0.20 deleterious(0.02) benign(0.209) TCGA-56-5897-01 7 156743221 156743221 G T NOM1 Nonsense_Mutation p.E264* 0.19 TCGA-56-5897-01 7 27169030 27169030 G C HOXA4 Silent p.V259V 0.06 TCGA-56-5897-01 7 27169744 27169744 G A HOXA4 Silent p.V203V 0.16 TCGA-56-5897-01 7 57528891 57528891 A T ZNF716 Nonsense_Mutation p.R242* 0.19 TCGA-56-5897-01 7 5967999 5967999 G T RSPH10B Silent p.R754R 0.17 TCGA-56-5897-01 7 81386571 81386571 G T HGF Missense_Mutation p.T139K 0.06 tolerated(1) possibly_damaging(0.82) TCGA-56-5897-01 7 82474630 82474630 G A PCLO Missense_Mutation p.P4668L 0.09 unknown(0) TCGA-56-5897-01 7 88963284 88963284 C T ZNF804B Missense_Mutation p.H330Y 0.15 tolerated(0.08) benign(0.014) TCGA-56-5897-01 7 99669079 99669079 T C ZNF3 Missense_Mutation p.N343S 0.15 tolerated(0.25) benign(0.029) TCGA-56-5897-01 8 35544208 35544208 A G UNC5D Silent p.T355T 0.17 TCGA-56-5897-01 8 54147415 54147415 G T OPRK1 Missense_Mutation p.P172T 0.23 deleterious(0) probably_damaging(0.965) TCGA-56-5897-01 8 77767225 77767225 T C ZFHX4 Silent p.L2690L 0.22 TCGA-56-5897-01 9 119976953 119976953 C A ASTN2 Missense_Mutation p.W233C 0.36 deleterious_low_confidence(0) unknown(0) TCGA-56-5897-01 9 132597006 132597006 C A C9orf78 Missense_Mutation p.R41S 0.05 deleterious(0) probably_damaging(0.999) TCGA-56-5897-01 9 32635551 32635551 C T TAF1L Silent p.L9L 0.10 TCGA-56-5897-01 9 8504320 8504320 C A PTPRD Missense_Mutation p.R588L 0.11 tolerated(0.5) probably_damaging(0.997) TCGA-56-5897-01 X 117788715 117788715 G C DOCK11 Missense_Mutation p.E1616Q 0.35 deleterious(0) possibly_damaging(0.826) TCGA-56-5897-01 X 122528848 122528848 C A GRIA3 Silent p.V260V 0.22 TCGA-56-5897-01 X 129159314 129159314 G A BCORL1 Silent p.L1346L 0.50 TCGA-56-5897-01 X 37028784 37028784 T A FAM47C Silent p.P767P 0.29 TCGA-56-5897-01 X 75649243 75649243 C T MAGEE1 Missense_Mutation p.S307F 0.54 deleterious_low_confidence(0.01) benign(0.005) TCGA-56-5897-01 X 78216453 78216453 C G P2RY10 Missense_Mutation p.R146G 0.35 deleterious(0) possibly_damaging(0.796) TCGA-56-5898-01 10 108923977 108923977 G T SORCS1 Missense_Mutation p.A103E 0.27 tolerated_low_confidence(0.88) benign(0.008) TCGA-56-5898-01 11 101946766 101946766 G T C11orf70 Missense_Mutation p.D200Y 0.21 deleterious(0) probably_damaging(0.998) TCGA-56-5898-01 11 113235651 113235651 C T TTC12 Silent p.N637N 0.31 TCGA-56-5898-01 11 124294718 124294718 A G OR8B4 Missense_Mutation p.L17S 0.24 deleterious_low_confidence(0) possibly_damaging(0.478) TCGA-56-5898-01 11 124857766 124857766 C T CCDC15 Silent p.P548P 0.28 TCGA-56-5898-01 11 125267790 125267790 C A PKNOX2 Silent p.V140V 0.24 TCGA-56-5898-01 11 128844845 128844845 C G ARHGAP32 Silent p.L735L 0.08 TCGA-56-5898-01 11 2946385 2946385 C G SLC22A18 Silent p.L411L 0.17 TCGA-56-5898-01 11 51515730 51515730 G T OR4C46 Missense_Mutation p.G150V 0.29 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-56-5898-01 11 5475341 5475341 G T OR51I2 Missense_Mutation p.G208V 0.38 deleterious(0.05) benign(0.199) TCGA-56-5898-01 11 57080481 57080481 G C TNKS1BP1 Missense_Mutation p.Q561E 0.17 tolerated(0.28) benign(0.007) TCGA-56-5898-01 11 57428849 57428849 C T CLP1 Missense_Mutation p.R407C 0.38 deleterious(0) probably_damaging(0.959) TCGA-56-5898-01 11 57958307 57958307 G T OR9Q2 Silent p.L115L 0.25 TCGA-56-5898-01 11 60665722 60665722 A G PRPF19 Missense_Mutation p.F388L 0.18 deleterious(0.03) possibly_damaging(0.598) TCGA-56-5898-01 11 71939479 71939479 G C INPPL1 Missense_Mutation p.A112P 0.23 tolerated(1) benign(0.001) TCGA-56-5898-01 12 10782146 10782146 C A STYK1 Silent p.V193V 0.20 TCGA-56-5898-01 12 108936867 108936867 T A SART3 Silent p.V281V 0.49 TCGA-56-5898-01 12 124362328 124362328 T C DNAH10 Missense_Mutation p.C2631R 0.37 possibly_damaging(0.532) TCGA-56-5898-01 12 131561415 131561415 T A GPR133 Missense_Mutation p.F515I 0.41 deleterious(0) benign(0.292) TCGA-56-5898-01 12 15654584 15654584 G A PTPRO Missense_Mutation p.R231H 0.29 tolerated_low_confidence(0.11) benign(0.002) TCGA-56-5898-01 12 32906940 32906940 C A YARS2 Missense_Mutation p.G287C 0.23 deleterious(0) probably_damaging(0.999) TCGA-56-5898-01 12 55042101 55042101 G T DCD 5'UTR 0.40 TCGA-56-5898-01 12 56500497 56500497 A T RP11-603J24.9 Nonsense_Mutation p.K53* 0.11 TCGA-56-5898-01 12 70963467 70963467 C G PTPRB Missense_Mutation p.V1208L 0.57 tolerated(0.66) benign(0.001) TCGA-56-5898-01 13 109817407 109817407 G C MYO16 Missense_Mutation p.G1753R 0.19 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-56-5898-01 13 111944527 111944527 G T ARHGEF7 Missense_Mutation p.D754Y 0.25 deleterious_low_confidence(0.03) possibly_damaging(0.714) TCGA-56-5898-01 13 29600146 29600146 G T MTUS2 Silent p.V447V 0.20 TCGA-56-5898-01 13 52548103 52548103 T G ATP7B Missense_Mutation p.E418A 0.14 deleterious(0) probably_damaging(0.997) TCGA-56-5898-01 13 58299291 58299291 G T PCDH17 Missense_Mutation p.G1115C 0.26 deleterious_low_confidence(0.02) benign(0.41) TCGA-56-5898-01 13 70535466 70535466 C T KLHL1 Nonsense_Mutation p.W264* 0.20 TCGA-56-5898-01 14 20711630 20711630 C A OR11H4 Missense_Mutation p.S227Y 0.30 deleterious(0) possibly_damaging(0.766) TCGA-56-5898-01 14 21058696 21058696 T C RNASE12 Missense_Mutation p.K63E 0.37 tolerated(0.1) probably_damaging(0.961) TCGA-56-5898-01 14 24529408 24529408 C T LRRC16B Missense_Mutation p.P669S 0.11 tolerated(0.11) benign(0.054) TCGA-56-5898-01 14 24975443 24975443 A G CMA1 Missense_Mutation p.F131L 0.25 tolerated(1) benign(0) TCGA-56-5898-01 14 29237474 29237474 C A FOXG1 Missense_Mutation p.T330N 0.28 tolerated(0.08) possibly_damaging(0.608) TCGA-56-5898-01 14 38724715 38724715 G A CLEC14A Silent p.C171C 0.33 TCGA-56-5898-01 14 50585243 50585243 C A SOS2 Missense_Mutation p.R1273L 0.25 deleterious_low_confidence(0.04) benign(0.081) TCGA-56-5898-01 14 67567581 67567582 GG A GPHN Frame_Shift_Del p.G416Tfs*21 0.30 TCGA-56-5898-01 14 67768148 67768148 G C MPP5 Missense_Mutation p.E207Q 0.12 deleterious(0.03) probably_damaging(0.94) TCGA-56-5898-01 15 22848885 22848885 G T TUBGCP5 Missense_Mutation p.R311L 0.19 deleterious(0.04) benign(0.038) TCGA-56-5898-01 15 25304721 25304721 G T SNORD116-3 3'Flank 0.19 TCGA-56-5898-01 15 34549958 34549958 T C SLC12A6 Missense_Mutation p.Y192C 0.26 deleterious(0) probably_damaging(1) TCGA-56-5898-01 15 64046826 64046826 C G HERC1 Missense_Mutation p.R551P 0.17 probably_damaging(0.999) TCGA-56-5898-01 15 72040852 72040852 G A THSD4 Missense_Mutation p.M778I 0.34 tolerated(0.08) benign(0.063) TCGA-56-5898-01 16 20441101 20441101 A G ACSM5 Missense_Mutation p.E368G 0.13 deleterious(0) probably_damaging(1) TCGA-56-5898-01 16 75663434 75663434 C T KARS Missense_Mutation p.R505H 0.12 deleterious(0) probably_damaging(0.963) TCGA-56-5898-01 16 81151074 81151074 C T PKD1L2 RNA 0.31 TCGA-56-5898-01 17 12626177 12626177 G C MYOCD Missense_Mutation p.E89D 0.28 tolerated(0.1) probably_damaging(0.994) TCGA-56-5898-01 17 18862955 18862955 G C SLC5A10 Silent p.V109V 0.26 TCGA-56-5898-01 17 34856770 34856770 C G MYO19 Silent p.R759R 0.33 TCGA-56-5898-01 17 57126641 57126641 T C TRIM37 Silent p.A476A 0.62 TCGA-56-5898-01 17 67079035 67079035 G A ABCA6 Missense_Mutation p.P1532L 0.38 deleterious(0.01) probably_damaging(0.965) TCGA-56-5898-01 17 7578442 7578442 T C TP53 Missense_Mutation p.Y163C 0.32 deleterious(0) probably_damaging(0.999) TCGA-56-5898-01 18 13089487 13089487 A C CEP192 Missense_Mutation p.Q2009P 0.26 tolerated(0.09) possibly_damaging(0.735) TCGA-56-5898-01 18 23772372 23772372 C G PSMA8 Silent p.V256V 0.19 TCGA-56-5898-01 18 28923950 28923950 A G DSG1 Missense_Mutation p.D628G 0.25 tolerated(0.11) benign(0.022) TCGA-56-5898-01 18 30321943 30321943 G T KLHL14 Missense_Mutation p.S339R 0.22 deleterious(0.02) benign(0.212) TCGA-56-5898-01 18 5398051 5398051 C G EPB41L3 Missense_Mutation p.G814A 0.33 tolerated(0.11) benign(0.005) TCGA-56-5898-01 19 41522660 41522660 C G CYP2B6 Missense_Mutation p.I468M 0.30 deleterious(0) probably_damaging(0.997) TCGA-56-5898-01 19 4157049 4157049 G C CREB3L3 Missense_Mutation p.D72H 0.22 deleterious(0.03) benign(0.042) TCGA-56-5898-01 19 44512957 44512957 A G ZNF230 Missense_Mutation p.K11E 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-56-5898-01 19 50550200 50550200 A G ZNF473 Missense_Mutation p.R834G 0.13 deleterious(0) benign(0.289) TCGA-56-5898-01 19 51650535 51650535 C A SIGLEC7 Silent p.G394G 0.21 TCGA-56-5898-01 19 55512225 55512225 C T NLRP2 Missense_Mutation p.P1050S 0.26 deleterious(0.04) benign(0.091) TCGA-56-5898-01 19 56538983 56538983 C T NLRP5 Missense_Mutation p.R462C 0.18 tolerated(0.12) benign(0.003) TCGA-56-5898-01 19 5724856 5724856 A G CATSPERD Missense_Mutation p.I37V 0.37 tolerated(0.28) benign(0.002) TCGA-56-5898-01 19 7707385 7707385 G T STXBP2 Missense_Mutation p.V289L 0.26 tolerated(0.08) benign(0.006) TCGA-56-5898-01 1 111862916 111862916 C A CHIA Missense_Mutation p.S420Y 0.16 tolerated(0.05) possibly_damaging(0.832) TCGA-56-5898-01 1 112305267 112305267 A T DDX20 Intron 0.31 TCGA-56-5898-01 1 1454326 1454326 G A ATAD3A Missense_Mutation p.R205Q 0.10 deleterious(0.04) benign(0.228) TCGA-56-5898-01 1 150470975 150470975 C G TARS2 Intron 0.15 TCGA-56-5898-01 1 160165289 160165289 C A CASQ1 Missense_Mutation p.P206T 0.47 deleterious(0) probably_damaging(1) TCGA-56-5898-01 1 161197498 161197498 G A TOMM40L Missense_Mutation p.E117K 0.32 tolerated(0.55) possibly_damaging(0.589) TCGA-56-5898-01 1 161336064 161336064 A T C1orf192 Missense_Mutation p.I32N 0.45 deleterious(0.03) possibly_damaging(0.494) TCGA-56-5898-01 1 175325554 175325554 G A TNR Missense_Mutation p.R1007W 0.36 deleterious(0) possibly_damaging(0.67) TCGA-56-5898-01 1 215933143 215933143 G T USH2A Missense_Mutation p.T3697K 0.28 benign(0.197) TCGA-56-5898-01 1 222732082 222732082 C A TAF1A Missense_Mutation p.D425Y 0.23 deleterious(0.01) probably_damaging(0.962) TCGA-56-5898-01 1 23107925 23107925 G A EPHB2 Missense_Mutation p.D25N 0.22 tolerated(0.19) possibly_damaging(0.715) TCGA-56-5898-01 1 237801776 237801776 T A RYR2 Missense_Mutation p.F2304L 0.15 probably_damaging(0.999) TCGA-56-5898-01 1 248737347 248737347 C T OR2T34 Missense_Mutation p.G238S 0.38 tolerated(0.1) possibly_damaging(0.451) TCGA-56-5898-01 1 26386826 26386826 C T TRIM63 Missense_Mutation p.M176I 0.18 tolerated(0.14) possibly_damaging(0.675) TCGA-56-5898-01 1 28800600 28800600 C A PHACTR4 Missense_Mutation p.S463Y 0.15 tolerated(1) benign(0.007) TCGA-56-5898-01 1 34066583 34066583 C T CSMD2 Silent p.R2248R 0.19 TCGA-56-5898-01 1 40434012 40434012 G T MFSD2A Missense_Mutation p.M418I 0.33 deleterious(0.01) probably_damaging(0.912) TCGA-56-5898-01 1 70446129 70446129 T C LRRC7 Missense_Mutation p.L222S 0.14 deleterious(0) benign(0.312) TCGA-56-5898-01 1 75038518 75038518 A G C1orf173 Missense_Mutation p.M959T 0.18 tolerated(0.4) benign(0.002) TCGA-56-5898-01 1 75693501 75693501 G T SLC44A5 Missense_Mutation p.R299S 0.14 tolerated(0.22) benign(0.002) TCGA-56-5898-01 1 92528792 92528792 G C EPHX4 Silent p.V346V 0.11 TCGA-56-5898-01 20 48491342 48491342 C A SLC9A8 Silent p.T369T 0.23 TCGA-56-5898-01 20 62521350 62521350 C T TPD52L2 3'UTR 0.24 TCGA-56-5898-01 21 10862789 10862789 G T IGHV1OR21-1 Nonsense_Mutation p.E29* 0.15 TCGA-56-5898-01 21 11039180 11039180 A T BAGE2 RNA 0.03 TCGA-56-5898-01 21 38844986 38844986 G A DYRK1A Missense_Mutation p.G4E 0.16 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-56-5898-01 22 18912699 18912699 C T PRODH Missense_Mutation p.D178N 0.22 deleterious(0.03) benign(0.085) TCGA-56-5898-01 22 41670655 41670655 C T RANGAP1 Silent p.V63V 0.25 TCGA-56-5898-01 2 11341532 11341532 T C ROCK2 Missense_Mutation p.Y876C 0.29 deleterious(0) probably_damaging(1) TCGA-56-5898-01 2 125530522 125530522 C T CNTNAP5 Missense_Mutation p.L893F 0.27 tolerated(0.09) benign(0.077) TCGA-56-5898-01 2 128922352 128922352 A G UGGT1 Silent p.P958P 0.26 TCGA-56-5898-01 2 130948287 130948287 G T MZT2B 3'UTR 0.09 TCGA-56-5898-01 2 135911411 135911411 A G RAB3GAP1 Missense_Mutation p.R752G 0.32 deleterious(0) benign(0.155) TCGA-56-5898-01 2 178988582 178988582 G C RBM45 Missense_Mutation p.M337I 0.29 tolerated(0.33) benign(0.069) TCGA-56-5898-01 2 179446770 179446770 G T TTN Missense_Mutation p.P22109H 0.18 TCGA-56-5898-01 2 179446771 179446771 G T TTN Missense_Mutation p.P22109T 0.17 TCGA-56-5898-01 2 179596203 179596203 G A TTN Silent p.L5764L 0.16 TCGA-56-5898-01 2 179640854 179640854 T A TTN Missense_Mutation p.T1913S 0.25 TCGA-56-5898-01 2 1926881 1926881 C A MYT1L Missense_Mutation p.R220S 0.23 tolerated_low_confidence(0.29) possibly_damaging(0.679) TCGA-56-5898-01 2 210561312 210561312 A G MAP2 Silent p.K1409K 0.22 TCGA-56-5898-01 2 21236225 21236225 G T APOB Silent p.T1341T 0.28 TCGA-56-5898-01 2 238483732 238483732 G A RAB17 Missense_Mutation p.A190V 0.11 tolerated(0.2) benign(0.035) TCGA-56-5898-01 2 39285891 39285891 C T SOS1 Missense_Mutation p.A90T 0.28 deleterious(0) probably_damaging(0.998) TCGA-56-5898-01 2 44036917 44036917 A G DYNC2LI1 3'UTR 0.25 TCGA-56-5898-01 2 55436584 55436584 A C CLHC1 Missense_Mutation p.F257C 0.27 deleterious(0) probably_damaging(0.91) TCGA-56-5898-01 2 64112824 64112824 T C UGP2 Missense_Mutation p.I226T 0.12 deleterious(0.02) benign(0.213) TCGA-56-5898-01 2 71891467 71891467 C T DYSF Silent p.L1691L 0.18 TCGA-56-5898-01 2 88367391 88367391 T G SMYD1 Missense_Mutation p.I3R 0.22 deleterious_low_confidence(0.05) benign(0.002) TCGA-56-5898-01 3 129695813 129695813 C A TRH Silent p.P161P 0.22 TCGA-56-5898-01 3 132363689 132363689 A G ACAD11 Silent p.Y67Y 0.29 TCGA-56-5898-01 3 133109124 133109124 C T TMEM108 Silent p.F517F 0.13 TCGA-56-5898-01 3 134851865 134851865 C T EPHB1 Missense_Mutation p.S424F 0.44 deleterious(0.01) possibly_damaging(0.463) TCGA-56-5898-01 3 138091773 138091773 G T MRAS Silent p.L16L 0.26 TCGA-56-5898-01 3 160395290 160395290 C T ARL14 Silent p.I52I 0.16 TCGA-56-5898-01 3 182897372 182897372 C T MCF2L2 Missense_Mutation p.E1072K 0.03 tolerated_low_confidence(0.37) benign(0) TCGA-56-5898-01 3 182897440 182897440 C T MCF2L2 Missense_Mutation p.C1049Y 0.03 tolerated(0.12) benign(0.254) TCGA-56-5898-01 3 184005696 184005696 C T ECE2 Silent p.L563L 0.89 TCGA-56-5898-01 3 186572371 186572371 C A ADIPOQ Missense_Mutation p.L205M 0.20 deleterious(0) probably_damaging(0.997) TCGA-56-5898-01 3 196387871 196387871 C T NRROS Missense_Mutation p.P453S 0.21 tolerated(0.36) benign(0.007) TCGA-56-5898-01 3 20142869 20142869 C T KAT2B Missense_Mutation p.R254C 0.16 tolerated(1) benign(0.002) TCGA-56-5898-01 3 97596183 97596183 G T CRYBG3 Missense_Mutation p.V101F 0.23 tolerated_low_confidence(0.15) benign(0.01) TCGA-56-5898-01 4 146064527 146064527 G A OTUD4 Missense_Mutation p.P493L 0.11 tolerated(0.37) probably_damaging(0.999) TCGA-56-5898-01 4 186294028 186294028 C A LRP2BP Missense_Mutation p.C262F 0.39 deleterious(0) possibly_damaging(0.825) TCGA-56-5898-01 5 10290841 10290841 T C CMBL Missense_Mutation p.I12V 0.23 tolerated(0.09) benign(0.222) TCGA-56-5898-01 5 137524751 137524751 G C CDC23 Silent p.P570P 0.21 TCGA-56-5898-01 5 1416275 1416275 G T SLC6A3 Silent p.G323G 0.16 TCGA-56-5898-01 5 148730726 148730726 G T GRPEL2 Missense_Mutation p.G187C 0.25 deleterious(0) possibly_damaging(0.8) TCGA-56-5898-01 5 150042512 150042512 C A MYOZ3 Silent p.P3P 0.40 TCGA-56-5898-01 5 150885463 150885463 G C FAT2 Missense_Mutation p.P4238R 0.23 probably_damaging(0.947) TCGA-56-5898-01 5 177422884 177422884 G T PROP1 Silent p.V17V 0.34 TCGA-56-5898-01 5 179193310 179193310 G T MAML1 Silent p.T433T 0.23 TCGA-56-5898-01 5 179193311 179193311 G T MAML1 Missense_Mutation p.G434W 0.24 deleterious(0) probably_damaging(0.995) TCGA-56-5898-01 5 180432609 180432609 C A BTNL3 Missense_Mutation p.L380I 0.19 tolerated(0.19) benign(0.231) TCGA-56-5898-01 5 32090630 32090630 C T PDZD2 Missense_Mutation p.P2359L 0.12 tolerated(0.08) possibly_damaging(0.642) TCGA-56-5898-01 5 37816091 37816091 G T GDNF Missense_Mutation p.P117T 0.21 tolerated(0.97) benign(0.002) TCGA-56-5898-01 5 38352408 38352408 C T EGFLAM Nonsense_Mutation p.Q174* 0.13 TCGA-56-5898-01 5 40981635 40981635 C A C7 Missense_Mutation p.S831Y 0.23 tolerated(0.11) benign(0.347) TCGA-56-5898-01 5 82868261 82868261 G T VCAN Missense_Mutation p.Q3254H 0.31 deleterious(0) probably_damaging(1) TCGA-56-5898-01 6 160200659 160200659 C T TCP1 Nonsense_Mutation p.W485* 0.11 TCGA-56-5898-01 6 166918101 166918101 C A RPS6KA2 Splice_Site p.X162_splice 0.11 TCGA-56-5898-01 6 43304821 43304821 C A ZNF318 3'UTR 0.35 TCGA-56-5898-01 6 46111495 46111495 G T ENPP4 3'UTR 0.24 TCGA-56-5898-01 6 47846462 47846462 C A PTCHD4 Missense_Mutation p.W706C 0.21 deleterious(0) probably_damaging(0.996) TCGA-56-5898-01 6 56480537 56480537 T C DST Intron 0.24 TCGA-56-5898-01 6 57512544 57512544 G C PRIM2 3'UTR 0.08 TCGA-56-5898-01 6 66044997 66044997 G A EYS Nonsense_Mutation p.Q548* 0.18 TCGA-56-5898-01 6 66115197 66115197 C A EYS Missense_Mutation p.C309F 0.09 deleterious(0.01) benign(0.012) TCGA-56-5898-01 6 80745093 80745093 G T TTK Missense_Mutation p.W628L 0.24 deleterious(0) possibly_damaging(0.89) TCGA-56-5898-01 7 123092884 123092884 A T IQUB Silent p.L763L 0.25 TCGA-56-5898-01 7 138429946 138429946 T C ATP6V0A4 Missense_Mutation p.N467S 0.26 deleterious(0) probably_damaging(0.999) TCGA-56-5898-01 7 142111478 142111478 G A TRBV5-7 Silent p.H86H 0.27 TCGA-56-5898-01 7 143140680 143140680 G T TAS2R60 Missense_Mutation p.E45D 0.13 deleterious(0.02) possibly_damaging(0.829) TCGA-56-5898-01 7 146818104 146818104 C A CNTNAP2 Missense_Mutation p.T263K 0.30 tolerated(0.85) possibly_damaging(0.463) TCGA-56-5898-01 7 154519510 154519510 G T DPP6 Missense_Mutation p.A266S 0.10 tolerated(0.72) benign(0.05) TCGA-56-5898-01 7 50605613 50605613 T G DDC Missense_Mutation p.E127A 0.37 tolerated(0.06) benign(0.027) TCGA-56-5898-01 7 50605614 50605614 C A DDC Nonsense_Mutation p.E127* 0.33 TCGA-56-5898-01 7 62752148 62752148 C G ZNF733P RNA 0.17 TCGA-56-5898-01 7 62752166 62752166 C T ZNF733P RNA 0.14 TCGA-56-5898-01 7 72985559 72985559 C T TBL2 Missense_Mutation p.A280T 0.31 tolerated(0.1) possibly_damaging(0.844) TCGA-56-5898-01 7 88965880 88965880 T C ZNF804B Missense_Mutation p.V1195A 0.27 deleterious(0.04) benign(0.04) TCGA-56-5898-01 7 91714871 91714871 T C AKAP9 Silent p.Y2965Y 0.11 TCGA-56-5898-01 7 93055820 93055820 A T CALCR Missense_Mutation p.S459T 0.20 tolerated(0.29) benign(0.006) TCGA-56-5898-01 8 131833626 131833626 C A ADCY8 Missense_Mutation p.A906S 0.32 tolerated(0.2) possibly_damaging(0.874) TCGA-56-5898-01 8 39644560 39644560 G C ADAM2 Nonsense_Mutation p.S275* 0.10 TCGA-56-5898-01 8 48794537 48794537 C A PRKDC Missense_Mutation p.W1632L 0.18 possibly_damaging(0.786) TCGA-56-5898-01 8 56922736 56922736 C T LYN 3'UTR 0.21 TCGA-56-5898-01 8 69050754 69050754 T A PREX2 Splice_Site p.X1363_splice 0.36 TCGA-56-5898-01 8 86044041 86044041 G T LRRCC1 Missense_Mutation p.D605Y 0.20 deleterious(0.03) benign(0.036) TCGA-56-5898-01 8 86354361 86354361 G T CA3 Missense_Mutation p.G98C 0.12 deleterious(0) probably_damaging(0.993) TCGA-56-5898-01 9 131261374 131261374 A G ODF2 Missense_Mutation p.E757G 0.14 deleterious(0) probably_damaging(0.987) TCGA-56-5898-01 X 104984630 104984630 C T IL1RAPL2 Missense_Mutation p.H332Y 0.54 tolerated(1) benign(0.04) TCGA-56-5898-01 X 111020095 111020095 C G TRPC5 Missense_Mutation p.A790P 0.04 tolerated(0.23) benign(0.001) TCGA-56-5898-01 X 125686548 125686548 G A DCAF12L1 Missense_Mutation p.A15V 0.20 tolerated(0.17) benign(0.004) TCGA-56-5898-01 X 128925032 128925032 G A SASH3 Silent p.P139P 0.26 TCGA-56-5898-01 X 18198764 18198764 A G BEND2 Missense_Mutation p.L432S 0.57 deleterious(0) possibly_damaging(0.748) TCGA-56-5898-01 X 77289124 77289124 G T ATP7A Missense_Mutation p.G1106C 0.53 deleterious(0) probably_damaging(1) TCGA-56-6545-01 10 102689090 102689090 A T FAM178A Nonsense_Mutation p.K687* 0.23 TCGA-56-6545-01 10 103569992 103569992 G C MGEA5 Missense_Mutation p.I143M 0.30 tolerated(0.23) possibly_damaging(0.781) TCGA-56-6545-01 10 11505690 11505690 C A USP6NL Nonsense_Mutation p.E430* 0.28 TCGA-56-6545-01 10 115601242 115601242 C G DCLRE1A Missense_Mutation p.E915Q 0.14 tolerated(0.1) benign(0.07) TCGA-56-6545-01 10 118196342 118196342 C T PNLIPRP3 Silent p.L57L 0.19 TCGA-56-6545-01 10 120801982 120801982 G T EIF3A Missense_Mutation p.P1017Q 0.14 tolerated(0.45) probably_damaging(0.996) TCGA-56-6545-01 10 15880243 15880243 A G FAM188A Missense_Mutation p.F149L 0.09 deleterious(0) probably_damaging(0.984) TCGA-56-6545-01 10 17156040 17156040 C T CUBN Missense_Mutation p.G290E 0.20 deleterious(0) probably_damaging(0.994) TCGA-56-6545-01 10 37419161 37419161 C A ANKRD30A Missense_Mutation p.A66E 0.11 deleterious(0) possibly_damaging(0.908) TCGA-56-6545-01 11 1016874 1016874 C A MUC6 Missense_Mutation p.S1976I 0.04 probably_damaging(0.974) TCGA-56-6545-01 11 1018760 1018760 G T MUC6 Silent p.T1347T 0.28 TCGA-56-6545-01 11 1018761 1018761 G A MUC6 Missense_Mutation p.T1347I 0.28 unknown(0) TCGA-56-6545-01 11 107424703 107424703 C G ALKBH8 Silent p.V123V 0.19 TCGA-56-6545-01 11 110134937 110134937 T A RDX Missense_Mutation p.K72I 0.24 deleterious(0) probably_damaging(0.966) TCGA-56-6545-01 11 119210227 119210227 G A C1QTNF5 Silent p.F182F 0.33 TCGA-56-6545-01 11 123516385 123516385 C G SCN3B Silent p.L43L 0.20 TCGA-56-6545-01 11 131781460 131781460 G T NTM Missense_Mutation p.V29L 0.20 tolerated(0.91) benign(0.005) TCGA-56-6545-01 11 3026612 3026612 C G CARS Missense_Mutation p.R734T 0.28 deleterious(0) possibly_damaging(0.48) TCGA-56-6545-01 11 43418950 43418950 A T TTC17 Missense_Mutation p.H276L 0.22 tolerated(0.09) probably_damaging(0.978) TCGA-56-6545-01 11 43427351 43427351 C A TTC17 Missense_Mutation p.S537R 0.21 tolerated(0.35) benign(0.021) TCGA-56-6545-01 11 49974362 49974362 T A OR4C13 Missense_Mutation p.Y130N 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-56-6545-01 11 5461847 5461847 C A OR51I1 Nonsense_Mutation p.E300* 0.32 TCGA-56-6545-01 11 55135383 55135383 C T OR4A15 Silent p.L8L 0.26 TCGA-56-6545-01 11 55904306 55904306 C A OR8J3 Missense_Mutation p.V297L 0.12 deleterious(0) benign(0.128) TCGA-56-6545-01 11 56468238 56468238 C A OR9G1 Silent p.I125I 0.08 TCGA-56-6545-01 11 56468590 56468590 C A OR9G1 Missense_Mutation p.H243N 0.14 deleterious(0) probably_damaging(1) TCGA-56-6545-01 11 56468598 56468598 C A OR9G1 Silent p.T245T 0.11 TCGA-56-6545-01 11 58190455 58190455 C A OR5B2 Missense_Mutation p.A94S 0.26 tolerated_low_confidence(0.06) benign(0.128) TCGA-56-6545-01 11 63713361 63713361 G C NAA40 Missense_Mutation p.R19P 0.08 tolerated(0.2) unknown(0) TCGA-56-6545-01 11 65360632 65360632 G A KCNK7 Silent p.F256F 0.21 TCGA-56-6545-01 11 77885471 77885471 G A KCTD21 Nonsense_Mutation p.Q44* 0.17 TCGA-56-6545-01 11 89531643 89531643 C A TRIM49 Silent p.S338S 0.15 TCGA-56-6545-01 11 89891312 89891312 G A NAALAD2 Splice_Site p.X266_splice 0.22 TCGA-56-6545-01 11 92085823 92085823 C A FAT3 Missense_Mutation p.A182E 0.22 probably_damaging(1) TCGA-56-6545-01 11 93454574 93454574 A G KIAA1731 Missense_Mutation p.D1949G 0.26 tolerated(0.09) benign(0.228) TCGA-56-6545-01 12 102471172 102471172 C A NUP37 Missense_Mutation p.C217F 0.11 deleterious(0.01) probably_damaging(0.95) TCGA-56-6545-01 12 103984805 103984805 G A STAB2 Missense_Mutation p.C71Y 0.25 deleterious(0) possibly_damaging(0.757) TCGA-56-6545-01 12 114804147 114804147 A T TBX5 Missense_Mutation p.S269T 0.24 deleterious(0.04) benign(0.05) TCGA-56-6545-01 12 120637201 120637201 G A RPLP0 Missense_Mutation p.R48C 0.13 deleterious(0.02) possibly_damaging(0.566) TCGA-56-6545-01 12 122803851 122803851 C T CLIP1 Missense_Mutation p.M1098I 0.11 tolerated(0.15) possibly_damaging(0.746) TCGA-56-6545-01 12 125302175 125302175 A T SCARB1 Missense_Mutation p.F69I 0.31 tolerated(0.06) benign(0.233) TCGA-56-6545-01 12 133272599 133272599 C T PXMP2 Silent p.L122L 0.26 TCGA-56-6545-01 12 15813567 15813567 A G EPS8 Silent p.G306G 0.21 TCGA-56-6545-01 12 20801620 20801620 A T PDE3A Splice_Site p.X856_splice 0.18 TCGA-56-6545-01 12 30873820 30873820 T C CAPRIN2 Silent p.S691S 0.24 TCGA-56-6545-01 12 38715036 38715036 G T ALG10B 3'UTR 0.21 TCGA-56-6545-01 12 43826519 43826519 C A ADAMTS20 Missense_Mutation p.G939V 0.18 deleterious(0.02) probably_damaging(0.984) TCGA-56-6545-01 12 43826520 43826520 C A ADAMTS20 Nonsense_Mutation p.G939* 0.16 TCGA-56-6545-01 12 44196114 44196114 A G TWF1 Missense_Mutation p.I86T 0.24 deleterious(0) probably_damaging(0.984) TCGA-56-6545-01 12 48174671 48174671 C T SLC48A1 3'UTR 0.12 TCGA-56-6545-01 12 4919972 4919972 G T KCNA6 Silent p.G255G 0.23 TCGA-56-6545-01 12 49445464 49445464 C A KMT2D Nonsense_Mutation p.E668* 0.12 TCGA-56-6545-01 12 57866396 57866396 C A ARHGAP9 Silent p.R700R 0.21 TCGA-56-6545-01 12 58125404 58125404 C T AGAP2 Missense_Mutation p.E659K 0.15 tolerated(0.09) possibly_damaging(0.885) TCGA-56-6545-01 12 6131150 6131150 G T VWF Missense_Mutation p.P1197Q 0.21 tolerated(0.32) probably_damaging(0.937) TCGA-56-6545-01 12 77202834 77202834 C T ZDHHC17 Missense_Mutation p.S111L 0.19 deleterious(0.03) benign(0.115) TCGA-56-6545-01 12 78362453 78362453 G T NAV3 Missense_Mutation p.Q214H 0.20 deleterious(0.05) probably_damaging(0.943) TCGA-56-6545-01 12 81747098 81747098 G T PPFIA2 Missense_Mutation p.H598Q 0.13 tolerated(1) benign(0.003) TCGA-56-6545-01 12 88471624 88471624 T G CEP290 Missense_Mutation p.E1812D 0.21 benign(0.078) TCGA-56-6545-01 12 93968918 93968918 T A SOCS2 Missense_Mutation p.L187Q 0.14 deleterious(0) probably_damaging(1) TCGA-56-6545-01 13 29608239 29608239 G T MTUS2 Missense_Mutation p.S818I 0.33 deleterious(0) possibly_damaging(0.509) TCGA-56-6545-01 13 61986120 61986120 C A PCDH20 Missense_Mutation p.Q704H 0.10 deleterious(0) probably_damaging(0.984) TCGA-56-6545-01 13 77740591 77740591 G C MYCBP2 Silent p.V2033V 0.20 TCGA-56-6545-01 14 106791099 106791099 C T IGHV3-30 Missense_Mutation p.R86Q 0.06 deleterious_low_confidence(0.01) probably_damaging(0.964) TCGA-56-6545-01 14 21558846 21558846 G C ZNF219 Missense_Mutation p.A673G 0.46 deleterious(0.02) probably_damaging(0.97) TCGA-56-6545-01 14 22038724 22038724 G T OR10G3 Missense_Mutation p.A51E 0.38 tolerated(0.15) benign(0.13) TCGA-56-6545-01 14 23596484 23596484 T C SLC7A8 Missense_Mutation p.T504A 0.35 tolerated(0.68) benign(0) TCGA-56-6545-01 14 47504448 47504448 T C MDGA2 Missense_Mutation p.T529A 0.46 tolerated(0.19) benign(0.297) TCGA-56-6545-01 14 55878324 55878324 C A ATG14 Nonsense_Mutation p.E73* 0.67 TCGA-56-6545-01 14 65246624 65246624 C T SPTB Missense_Mutation p.R1431Q 0.45 tolerated(0.07) possibly_damaging(0.663) TCGA-56-6545-01 14 76101273 76101273 A G FLVCR2 Silent p.G347G 0.43 TCGA-56-6545-01 15 28419575 28419575 C G HERC2 Missense_Mutation p.Q3341H 0.34 possibly_damaging(0.854) TCGA-56-6545-01 15 29398902 29398902 C - APBA2 Frame_Shift_Del p.N599Kfs*2 0.29 TCGA-56-6545-01 15 68468058 68468058 C T PIAS1 Missense_Mutation p.S418L 0.12 tolerated(0.13) benign(0.054) TCGA-56-6545-01 15 79066580 79066580 C G ADAMTS7 Missense_Mutation p.A647P 0.56 deleterious(0.01) benign(0.265) TCGA-56-6545-01 15 80423536 80423536 A G ZFAND6 Missense_Mutation p.T127A 0.09 tolerated(0.39) benign(0.002) TCGA-56-6545-01 16 15818395 15818395 G A NDE1 3'UTR 0.45 TCGA-56-6545-01 16 17352949 17352949 C A XYLT1 Missense_Mutation p.R270L 0.19 deleterious(0) probably_damaging(0.999) TCGA-56-6545-01 16 2014633 2014633 G T RPS2 Intron 0.17 TCGA-56-6545-01 16 2296982 2296982 C T ECI1 Missense_Mutation p.A58T 0.33 deleterious(0.02) probably_damaging(0.993) TCGA-56-6545-01 16 28993679 28993679 T C SPNS1 Missense_Mutation p.L323P 0.35 deleterious(0) probably_damaging(0.992) TCGA-56-6545-01 16 30035111 30035111 G T C16orf92 Missense_Mutation p.R65I 0.20 deleterious(0) possibly_damaging(0.883) TCGA-56-6545-01 16 30456053 30456053 T C SEPHS2 Silent p.Q332Q 0.40 TCGA-56-6545-01 16 57060632 57060632 G T NLRC5 Missense_Mutation p.A593S 0.16 tolerated(0.09) benign(0.354) TCGA-56-6545-01 16 65026887 65026887 C T CDH11 Missense_Mutation p.G192R 0.15 deleterious(0.01) probably_damaging(0.917) TCGA-56-6545-01 16 67709423 67709423 C A GFOD2 Missense_Mutation p.A265S 0.14 tolerated(0.37) benign(0.005) TCGA-56-6545-01 16 68936358 68936358 A C TANGO6 Silent p.R540R 0.15 TCGA-56-6545-01 16 71392738 71392738 G A CALB2 Missense_Mutation p.E15K 0.23 tolerated(0.35) benign(0.03) TCGA-56-6545-01 16 71682770 71682770 C T PHLPP2 3'UTR 0.25 TCGA-56-6545-01 16 74670477 74670477 T G RFWD3 Splice_Site p.X399_splice 0.22 TCGA-56-6545-01 16 76572187 76572187 T C CNTNAP4 Missense_Mutation p.F984S 0.16 deleterious(0.02) benign(0.191) TCGA-56-6545-01 16 84529301 84529301 T - TLDC1 Frame_Shift_Del p.E125Kfs*17 0.21 TCGA-56-6545-01 16 85948115 85948115 C A IRF8 Missense_Mutation p.A197E 0.47 tolerated(0.23) benign(0.113) TCGA-56-6545-01 16 89352526 89352526 C T ANKRD11 Silent p.L271L 0.13 TCGA-56-6545-01 17 10235464 10235464 G T MYH13 Silent p.L750L 0.49 TCGA-56-6545-01 17 10352316 10352316 A G MYH4 Silent p.A1410A 0.15 TCGA-56-6545-01 17 11535923 11535923 C A DNAH9 Missense_Mutation p.S513Y 0.21 benign(0.002) TCGA-56-6545-01 17 1542992 1542992 G C SCARF1 Nonsense_Mutation p.S395* 0.15 TCGA-56-6545-01 17 38068665 38068665 T C GSDMB Silent p.S107S 0.28 TCGA-56-6545-01 17 40474455 40474455 G C STAT3 Nonsense_Mutation p.S649* 0.13 TCGA-56-6545-01 17 40761340 40761340 C T FAM134C Translation_Start_Site p.M1? 0.20 deleterious_low_confidence(0) possibly_damaging(0.488) TCGA-56-6545-01 17 56435697 56435697 G A RNF43 Silent p.V480V 0.26 TCGA-56-6545-01 17 7578461 7578461 C A TP53 Missense_Mutation p.V157F 0.39 deleterious(0) probably_damaging(0.997) TCGA-56-6545-01 18 14851727 14851727 C T ANKRD30B Nonsense_Mutation p.Q1143* 0.18 TCGA-56-6545-01 18 28742650 28742650 G T DSC1 5'UTR 0.18 TCGA-56-6545-01 18 30349716 30349716 G T KLHL14 Nonsense_Mutation p.S280* 0.12 TCGA-56-6545-01 18 43703282 43703282 A T HAUS1 Missense_Mutation p.R206S 0.29 tolerated(0.39) benign(0.01) TCGA-56-6545-01 18 65179671 65179671 C A DSEL Missense_Mutation p.K735N 0.26 tolerated(0.53) benign(0.004) TCGA-56-6545-01 18 72998506 72998506 G C TSHZ1 Missense_Mutation p.D337H 0.29 deleterious(0.05) possibly_damaging(0.897) TCGA-56-6545-01 18 76755006 76755006 C T SALL3 Silent p.F1005F 0.18 TCGA-56-6545-01 19 11547298 11547298 C T PRKCSH Silent p.C56C 0.07 TCGA-56-6545-01 19 12541337 12541337 T C ZNF443 Missense_Mutation p.H550R 0.22 deleterious(0.01) probably_damaging(0.99) TCGA-56-6545-01 19 13054428 13054428 G A CALR Silent p.T346T 0.21 TCGA-56-6545-01 19 14883226 14883226 C A EMR2 Missense_Mutation p.V95L 0.28 tolerated(0.45) benign(0.002) TCGA-56-6545-01 19 2185903 2185903 G A DOT1L Missense_Mutation p.V59I 0.04 tolerated(0.16) benign(0.394) TCGA-56-6545-01 19 23405270 23405270 T C ZNF724P Missense_Mutation p.K593E 0.34 tolerated(1) probably_damaging(0.973) TCGA-56-6545-01 19 35617286 35617286 C A LGI4 Missense_Mutation p.R396L 0.19 deleterious(0.05) benign(0.116) TCGA-56-6545-01 19 36673999 36673999 C G ZNF565 Missense_Mutation p.R290P 0.08 tolerated(0.16) probably_damaging(0.99) TCGA-56-6545-01 19 37382620 37382620 C G ZNF829 Missense_Mutation p.R439T 0.23 deleterious(0) benign(0.141) TCGA-56-6545-01 19 38090575 38090575 T C ZNF540 Missense_Mutation p.W20R 0.22 deleterious(0) probably_damaging(0.998) TCGA-56-6545-01 19 40901692 40901692 G A PRX Missense_Mutation p.S856L 0.21 deleterious(0) possibly_damaging(0.504) TCGA-56-6545-01 19 41594427 41594427 G A CYP2A13 Silent p.V17V 0.30 TCGA-56-6545-01 19 42482868 42482868 C G ATP1A3 Missense_Mutation p.R520P 0.18 deleterious(0.01) possibly_damaging(0.882) TCGA-56-6545-01 19 43233400 43233400 T A PSG3 Missense_Mutation p.Q373L 0.21 tolerated(0.45) benign(0.019) TCGA-56-6545-01 19 4329999 4329999 G A STAP2 Silent p.V138V 0.14 TCGA-56-6545-01 19 44934665 44934665 G C ZNF229 Missense_Mutation p.F97L 0.17 tolerated(0.32) benign(0) TCGA-56-6545-01 19 46351134 46351134 G C SYMPK Missense_Mutation p.I184M 0.24 deleterious(0) possibly_damaging(0.713) TCGA-56-6545-01 19 50482395 50482395 G A VRK3 Missense_Mutation p.R461C 0.19 deleterious(0.05) benign(0.022) TCGA-56-6545-01 19 50491540 50491540 C T VRK3 Intron 0.25 TCGA-56-6545-01 19 51132551 51132551 C T SYT3 Silent p.S427S 0.30 TCGA-56-6545-01 19 52716078 52716078 G C PPP2R1A Missense_Mutation p.D215H 0.25 deleterious(0) probably_damaging(0.999) TCGA-56-6545-01 19 56436388 56436388 G C NLRP13 Silent p.T111T 0.18 TCGA-56-6545-01 19 603849 603849 A T HCN2 Missense_Mutation p.D313V 0.27 deleterious(0) probably_damaging(0.985) TCGA-56-6545-01 19 619277 619277 G A POLRMT Missense_Mutation p.S1029F 0.05 deleterious(0) probably_damaging(0.966) TCGA-56-6545-01 19 6921840 6921840 C A EMR1 Nonsense_Mutation p.C579* 0.18 TCGA-56-6545-01 19 9017356 9017356 G C MUC16 Silent p.L12656L 0.08 TCGA-56-6545-01 19 9324709 9324709 G T OR7D4 Missense_Mutation p.Q269K 0.13 tolerated(0.12) benign(0.02) TCGA-56-6545-01 19 9324710 9324710 G T OR7D4 Silent p.S268S 0.13 TCGA-56-6545-01 1 110198942 110198942 G C GSTM4 5'UTR 0.32 TCGA-56-6545-01 1 12853651 12853651 A G PRAMEF1 Missense_Mutation p.K92R 0.17 tolerated(0.05) possibly_damaging(0.756) TCGA-56-6545-01 1 145281588 145281588 G T NOTCH2NL Missense_Mutation p.G173V 0.08 deleterious(0.01) probably_damaging(0.981) TCGA-56-6545-01 1 145415545 145415545 C A HFE2 Missense_Mutation p.Q122K 0.19 deleterious(0.01) benign(0.137) TCGA-56-6545-01 1 149907536 149907536 T A MTMR11 Missense_Mutation p.T69S 0.24 tolerated(0.09) possibly_damaging(0.663) TCGA-56-6545-01 1 154965583 154965583 C T FLAD1 3'UTR 0.15 TCGA-56-6545-01 1 155148600 155148600 G A TRIM46 Missense_Mutation p.E188K 0.25 deleterious(0.02) benign(0.015) TCGA-56-6545-01 1 155225933 155225933 C T SCAMP3 3'UTR 0.35 TCGA-56-6545-01 1 155252472 155252472 G T HCN3 Silent p.V183V 0.26 TCGA-56-6545-01 1 157105292 157105292 C T ETV3 Missense_Mutation p.M85I 0.16 deleterious(0) probably_damaging(0.999) TCGA-56-6545-01 1 158943500 158943500 G T PYHIN1 Missense_Mutation p.V475L 0.25 tolerated_low_confidence(0.11) benign(0.005) TCGA-56-6545-01 1 162343862 162343862 G T C1orf111 Silent p.G254G 0.20 TCGA-56-6545-01 1 169951129 169951129 G A KIFAP3 Silent p.L594L 0.25 TCGA-56-6545-01 1 170940928 170940928 G A MROH9 Missense_Mutation p.E174K 0.19 deleterious(0) probably_damaging(0.986) TCGA-56-6545-01 1 171244533 171244533 C G FMO1 Missense_Mutation p.Q124E 0.24 deleterious(0.01) possibly_damaging(0.559) TCGA-56-6545-01 1 171504714 171504714 C G PRRC2C Missense_Mutation p.P672R 0.22 unknown(0) TCGA-56-6545-01 1 173703498 173703498 A T KLHL20 Intron 0.25 TCGA-56-6545-01 1 176564197 176564197 C A PAPPA2 Missense_Mutation p.P486Q 0.22 tolerated(0.07) benign(0.008) TCGA-56-6545-01 1 176564198 176564198 A C PAPPA2 Silent p.P486P 0.22 TCGA-56-6545-01 1 176709227 176709227 G C PAPPA2 Missense_Mutation p.R1349P 0.20 deleterious(0.03) benign(0.214) TCGA-56-6545-01 1 177249550 177249550 C T BRINP2 Missense_Mutation p.S413F 0.13 deleterious(0.01) benign(0.172) TCGA-56-6545-01 1 177902668 177902668 C A SEC16B Missense_Mutation p.R892L 0.21 tolerated(0.18) benign(0.039) TCGA-56-6545-01 1 180017694 180017694 A G CEP350 Missense_Mutation p.Q1549R 0.21 benign(0.057) TCGA-56-6545-01 1 186056380 186056380 G T HMCN1 Missense_Mutation p.K3026N 0.06 probably_damaging(0.997) TCGA-56-6545-01 1 186064593 186064593 A G HMCN1 Missense_Mutation p.T3505A 0.20 benign(0.209) TCGA-56-6545-01 1 186300668 186300668 G C TPR Missense_Mutation p.Q1884E 0.17 benign(0.042) TCGA-56-6545-01 1 196918772 196918772 G T CFHR2 Missense_Mutation p.K82N 0.24 tolerated(0.15) probably_damaging(0.999) TCGA-56-6545-01 1 197168544 197168544 G C ZBTB41 Missense_Mutation p.Q354E 0.14 tolerated(0.07) benign(0.075) TCGA-56-6545-01 1 201868376 201868376 G A LMOD1 Nonsense_Mutation p.Q589* 0.19 TCGA-56-6545-01 1 203143593 203143593 A G MYBPH Missense_Mutation p.M158T 0.17 tolerated(1) benign(0) TCGA-56-6545-01 1 211093085 211093085 C A KCNH1 Silent p.S453S 0.20 TCGA-56-6545-01 1 213415138 213415138 C A RPS6KC1 Silent p.P773P 0.18 TCGA-56-6545-01 1 220091888 220091888 G T SLC30A10 Intron 0.21 TCGA-56-6545-01 1 22216521 22216521 G C HSPG2 Missense_Mutation p.S176C 0.38 possibly_damaging(0.806) TCGA-56-6545-01 1 226054858 226054858 C T TMEM63A Missense_Mutation p.D174N 0.13 tolerated(1) benign(0.199) TCGA-56-6545-01 1 228529140 228529140 G A OBSCN Silent p.L6910L 0.18 TCGA-56-6545-01 1 229568328 229568328 G C ACTA1 Silent p.S143S 0.21 TCGA-56-6545-01 1 229675264 229675264 C A ABCB10 Missense_Mutation p.M426I 0.26 tolerated(0.69) benign(0.023) TCGA-56-6545-01 1 238053419 238053419 C G ZP4 Missense_Mutation p.R78T 0.26 tolerated(0.64) benign(0.002) TCGA-56-6545-01 1 240341368 240341368 G T FMN2 Nonsense_Mutation p.E644* 0.17 TCGA-56-6545-01 1 240341369 240341369 G T FMN2 Splice_Site p.X644_splice 0.18 TCGA-56-6545-01 1 248129375 248129375 G T OR2AK2 Nonsense_Mutation p.G248* 0.16 TCGA-56-6545-01 1 248569835 248569835 G T OR2T1 Silent p.L180L 0.23 TCGA-56-6545-01 1 248637044 248637044 T C OR2T3 Silent p.V131V 0.13 TCGA-56-6545-01 1 68910338 68910338 C A RPE65 Missense_Mutation p.R124L 0.38 deleterious(0.03) benign(0.262) TCGA-56-6545-01 1 92441989 92441989 G T BRDT Silent p.A204A 0.33 TCGA-56-6545-01 20 1161765 1161765 G T TMEM74B Nonsense_Mutation p.Y166* 0.23 TCGA-56-6545-01 20 18296277 18296277 A G ZNF133 Missense_Mutation p.Q260R 0.27 tolerated(0.08) possibly_damaging(0.864) TCGA-56-6545-01 20 2308908 2308908 G A TGM3 Nonsense_Mutation p.W410* 0.32 TCGA-56-6545-01 20 35219627 35219627 G A TGIF2 Silent p.R169R 0.41 TCGA-56-6545-01 20 35509121 35509121 A T TLDC2 Missense_Mutation p.T136S 0.09 tolerated(0.17) possibly_damaging(0.816) TCGA-56-6545-01 20 3677795 3677795 C T SIGLEC1 Missense_Mutation p.A773T 0.36 tolerated(0.43) benign(0.02) TCGA-56-6545-01 20 40126717 40126717 T A CHD6 Intron 0.14 TCGA-56-6545-01 20 46281693 46281693 G T NCOA3 Missense_Mutation p.Q1380H 0.08 tolerated(0.29) probably_damaging(0.926) TCGA-56-6545-01 20 62340457 62340457 G A ZGPAT Silent p.K175K 0.05 TCGA-56-6545-01 21 10944750 10944750 C A TPTE Missense_Mutation p.D162Y 0.11 deleterious(0) probably_damaging(0.995) TCGA-56-6545-01 21 11039276 11039276 A T BAGE2 RNA 0.05 TCGA-56-6545-01 21 14982885 14982885 C A POTED Missense_Mutation p.S112R 0.40 tolerated(0.31) benign(0.01) TCGA-56-6545-01 21 19737458 19737458 G T TMPRSS15 Missense_Mutation p.R258S 0.25 tolerated(0.3) benign(0.062) TCGA-56-6545-01 21 45999820 45999820 G A KRTAP10-5 Silent p.T212T 0.33 TCGA-56-6545-01 22 18975354 18975354 G T DGCR5 RNA 0.36 TCGA-56-6545-01 22 26853846 26853846 G A HPS4 Missense_Mutation p.A645V 0.06 deleterious(0) benign(0.284) TCGA-56-6545-01 22 30890178 30890178 G T SEC14L4 Missense_Mutation p.A180E 0.27 tolerated(1) benign(0.068) TCGA-56-6545-01 22 38273833 38273833 A C EIF3L Missense_Mutation p.E410D 0.30 deleterious(0.03) probably_damaging(0.964) TCGA-56-6545-01 22 39917932 39917932 C G ATF4 Silent p.V127V 0.21 TCGA-56-6545-01 22 50719566 50719566 C A PLXNB2 Nonsense_Mutation p.E1239* 0.29 TCGA-56-6545-01 22 50969224 50969224 G A ODF3B Missense_Mutation p.P200S 0.12 deleterious(0) probably_damaging(1) TCGA-56-6545-01 22 51178279 51178279 G A ACR Missense_Mutation p.E147K 0.27 tolerated(1) benign(0.002) TCGA-56-6545-01 2 102959991 102959991 T C IL1RL1 Intron 0.18 TCGA-56-6545-01 2 110310749 110310749 C T SEPT10 Missense_Mutation p.R359H 0.19 deleterious(0.03) possibly_damaging(0.614) TCGA-56-6545-01 2 113993011 113993011 G C PAX8 Silent p.A349A 0.33 TCGA-56-6545-01 2 130877618 130877618 G C POTEF Silent p.L157L 0.19 TCGA-56-6545-01 2 130912698 130912698 T A SMPD4 Missense_Mutation p.Q514L 0.22 tolerated(0.12) possibly_damaging(0.607) TCGA-56-6545-01 2 131803556 131803556 G A ARHGEF4 Intron 0.19 TCGA-56-6545-01 2 135757526 135757526 C T MAP3K19 Missense_Mutation p.E99K 0.24 tolerated(0.14) possibly_damaging(0.856) TCGA-56-6545-01 2 141274476 141274476 G T LRP1B Missense_Mutation p.R2711S 0.16 benign(0) TCGA-56-6545-01 2 152497110 152497110 G C NEB Missense_Mutation p.P2815R 0.17 probably_damaging(1) TCGA-56-6545-01 2 159033122 159033122 C A CCDC148 Missense_Mutation p.A514S 0.24 deleterious(0.03) possibly_damaging(0.866) TCGA-56-6545-01 2 179593309 179593309 C A TTN Missense_Mutation p.M6448I 0.47 TCGA-56-6545-01 2 196548515 196548515 G T SLC39A10 Missense_Mutation p.L367F 0.40 deleterious(0) probably_damaging(0.999) TCGA-56-6545-01 2 196722277 196722277 C T DNAH7 Missense_Mutation p.M2746I 0.35 tolerated(0.45) benign(0.003) TCGA-56-6545-01 2 206587416 206587416 G T NRP2 Missense_Mutation p.W216C 0.36 deleterious(0) probably_damaging(1) TCGA-56-6545-01 2 234091109 234091109 G C INPP5D Missense_Mutation p.E697Q 0.38 tolerated(0.1) benign(0.066) TCGA-56-6545-01 2 25180784 25180784 C G DNAJC27 Missense_Mutation p.Q100H 0.17 tolerated(0.09) benign(0.014) TCGA-56-6545-01 2 27445786 27445786 C T CAD Silent p.P230P 0.41 TCGA-56-6545-01 2 27660216 27660216 C G NRBP1 Missense_Mutation p.P298A 0.32 tolerated(0.05) benign(0.015) TCGA-56-6545-01 2 43452474 43452474 C G ZFP36L2 Missense_Mutation p.E157Q 0.45 deleterious(0) probably_damaging(0.99) TCGA-56-6545-01 2 54482223 54482223 C T TSPYL6 Missense_Mutation p.D356N 0.15 tolerated(0.07) possibly_damaging(0.897) TCGA-56-6545-01 2 61417456 61417456 C G USP34 Missense_Mutation p.D3275H 0.06 deleterious(0.01) possibly_damaging(0.525) TCGA-56-6545-01 2 61524017 61524017 G C USP34 Missense_Mutation p.S1391C 0.08 deleterious(0) possibly_damaging(0.841) TCGA-56-6545-01 2 65243695 65243695 C A SLC1A4 Missense_Mutation p.H308N 0.06 deleterious(0) probably_damaging(0.947) TCGA-56-6545-01 2 65572029 65572029 C A SPRED2 Missense_Mutation p.D10Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-56-6545-01 2 70456422 70456422 G C TIA1 Missense_Mutation p.P84R 0.06 deleterious(0) possibly_damaging(0.791) TCGA-56-6545-01 2 80646714 80646714 C G CTNNA2 Missense_Mutation p.N426K 0.37 tolerated(0.1) benign(0.176) TCGA-56-6545-01 3 122134320 122134320 G A WDR5B Missense_Mutation p.A19V 0.27 tolerated(0.13) benign(0.002) TCGA-56-6545-01 3 126386151 126386151 C G NUP210P1 RNA 0.35 TCGA-56-6545-01 3 130159471 130159471 G T COL6A5 Missense_Mutation p.V2097L 0.15 tolerated(1) benign(0.002) TCGA-56-6545-01 3 131624189 131624189 T - CPNE4 Frame_Shift_Del p.G34Afs*33 0.14 TCGA-56-6545-01 3 141161660 141161660 G A ZBTB38 Missense_Mutation p.V144I 0.18 tolerated(0.09) benign(0.175) TCGA-56-6545-01 3 141526658 141526658 C G GRK7 Missense_Mutation p.L408V 0.06 tolerated(0.24) possibly_damaging(0.782) TCGA-56-6545-01 3 150931162 150931162 T C P2RY14 Missense_Mutation p.K315E 0.11 tolerated(0.07) benign(0.08) TCGA-56-6545-01 3 186440248 186440248 C T KNG1 Missense_Mutation p.T110I 0.28 tolerated(0.09) benign(0.135) TCGA-56-6545-01 3 187086299 187086299 A T RTP4 Missense_Mutation p.T24S 0.15 tolerated(0.07) benign(0.015) TCGA-56-6545-01 3 19574939 19574939 T A KCNH8 Missense_Mutation p.V891E 0.34 deleterious(0) benign(0.312) TCGA-56-6545-01 3 19574965 19574965 T A KCNH8 Missense_Mutation p.S900T 0.36 tolerated(0.51) benign(0.002) TCGA-56-6545-01 3 196381479 196381479 C T NRROS Silent p.S23S 0.08 TCGA-56-6545-01 3 197410238 197410238 C A KIAA0226 Missense_Mutation p.M640I 0.21 deleterious(0.01) probably_damaging(0.936) TCGA-56-6545-01 3 38888748 38888748 C G SCN11A Missense_Mutation p.E1605Q 0.31 deleterious(0) probably_damaging(0.998) TCGA-56-6545-01 3 38904708 38904708 T G SCN11A Missense_Mutation p.Q1345P 0.32 deleterious(0) possibly_damaging(0.513) TCGA-56-6545-01 3 40192641 40192641 C A MYRIP Missense_Mutation p.H145Q 0.24 deleterious(0.01) possibly_damaging(0.717) TCGA-56-6545-01 3 48481715 48481715 C T TMA7 Silent p.G3G 0.29 TCGA-56-6545-01 3 53844043 53844043 G A CACNA1D Silent p.Q1990Q 0.35 TCGA-56-6545-01 3 58502934 58502934 G A ACOX2 Missense_Mutation p.R617W 0.30 deleterious(0) probably_damaging(1) TCGA-56-6545-01 3 69230202 69230202 C A FRMD4B Missense_Mutation p.R900L 0.24 deleterious(0) probably_damaging(0.998) TCGA-56-6545-01 3 7348196 7348196 C G GRM7 Missense_Mutation p.A297G 0.31 tolerated(0.12) benign(0.096) TCGA-56-6545-01 3 9854643 9854643 C T TTLL3 Missense_Mutation p.T165I 0.37 tolerated(0.35) benign(0.205) TCGA-56-6545-01 4 114278337 114278337 G C ANK2 Missense_Mutation p.V2855L 0.30 benign(0.037) TCGA-56-6545-01 4 114375662 114375662 T A CAMK2D 3'UTR 0.39 TCGA-56-6545-01 4 158224787 158224787 G T GRIA2 Nonsense_Mutation p.G105* 0.32 TCGA-56-6545-01 4 169348231 169348231 G C DDX60L Missense_Mutation p.C640W 0.42 deleterious(0) probably_damaging(0.95) TCGA-56-6545-01 4 178272639 178272639 G T NEIL3 Silent p.V325V 0.35 TCGA-56-6545-01 4 420711 420711 G A ABCA11P RNA 0.31 TCGA-56-6545-01 4 72634119 72634119 T G GC Missense_Mutation p.S73R 0.09 tolerated(0.11) benign(0.026) TCGA-56-6545-01 4 72634120 72634120 G T GC Silent p.P72P 0.09 TCGA-56-6545-01 4 73013088 73013088 G C NPFFR2 Missense_Mutation p.K376N 0.25 tolerated(0.14) possibly_damaging(0.854) TCGA-56-6545-01 4 89859339 89859339 A G FAM13A Missense_Mutation p.M220T 0.27 deleterious(0) possibly_damaging(0.701) TCGA-56-6545-01 5 101834609 101834609 T A SLCO6A1 5'UTR 0.39 TCGA-56-6545-01 5 112878128 112878128 G T YTHDC2 Missense_Mutation p.D475Y 0.45 deleterious(0) possibly_damaging(0.805) TCGA-56-6545-01 5 115782854 115782854 G A SEMA6A Silent p.L850L 0.04 TCGA-56-6545-01 5 120021833 120021833 C T PRR16 Missense_Mutation p.T92M 0.37 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-56-6545-01 5 140216019 140216019 T C PCDHA7 Missense_Mutation p.L684S 0.45 tolerated_low_confidence(0.74) benign(0.002) TCGA-56-6545-01 5 140228176 140228176 C A PCDHA9 Missense_Mutation p.H32Q 0.39 deleterious_low_confidence(0.01) benign(0.155) TCGA-56-6545-01 5 140590115 140590115 C A PCDHB12 Missense_Mutation p.L546M 0.35 deleterious_low_confidence(0.03) probably_damaging(0.981) TCGA-56-6545-01 5 140595204 140595204 G T PCDHB13 Silent p.L503L 0.37 TCGA-56-6545-01 5 153857226 153857226 C A HAND1 Missense_Mutation p.A115S 0.12 tolerated(0.11) possibly_damaging(0.798) TCGA-56-6545-01 5 177570966 177570966 G A RMND5B Missense_Mutation p.R184H 0.06 tolerated(0.1) benign(0.013) TCGA-56-6545-01 5 178392396 178392396 A C ZNF454 Missense_Mutation p.N331H 0.37 tolerated(0.29) benign(0.026) TCGA-56-6545-01 5 35861032 35861032 C T IL7R Missense_Mutation p.S54L 0.16 tolerated(0.22) benign(0.044) TCGA-56-6545-01 5 68423946 68423946 G C SLC30A5 Missense_Mutation p.R705T 0.27 tolerated(0.09) benign(0.072) TCGA-56-6545-01 5 98129295 98129295 T A RGMB Missense_Mutation p.F425L 0.45 deleterious(0) probably_damaging(0.998) TCGA-56-6545-01 6 105609428 105609428 C T POPDC3 Silent p.L119L 0.12 TCGA-56-6545-01 6 116906012 116906012 G C RWDD1 Missense_Mutation p.A88P 0.09 tolerated(0.25) benign(0.022) TCGA-56-6545-01 6 160240058 160240058 G C PNLDC1 Missense_Mutation p.E435D 0.15 deleterious(0.03) possibly_damaging(0.568) TCGA-56-6545-01 6 26027273 26027273 C A HIST1H4B Missense_Mutation p.A70S 0.12 tolerated(0.12) possibly_damaging(0.762) TCGA-56-6545-01 6 26200113 26200113 G C HIST1H2BF Missense_Mutation p.K109N 0.14 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-56-6545-01 6 2896288 2896288 G A SERPINB9 Missense_Mutation p.S102L 0.09 tolerated(0.1) benign(0.12) TCGA-56-6545-01 6 30668371 30668371 A C MDC1 Silent p.P2047P 0.07 TCGA-56-6545-01 6 32014025 32014025 C G TNXB 5'Flank 0.26 TCGA-56-6545-01 6 32188918 32188918 A T NOTCH4 Missense_Mutation p.H212Q 0.13 tolerated(0.29) possibly_damaging(0.846) TCGA-56-6545-01 6 36823495 36823495 C A PPIL1 3'UTR 0.24 TCGA-56-6545-01 6 42713446 42713446 C A TBCC Silent p.A122A 0.10 TCGA-56-6545-01 6 46107655 46107655 G C ENPP4 Missense_Mutation p.W112S 0.12 deleterious(0) probably_damaging(0.995) TCGA-56-6545-01 6 50697018 50697018 G T TFAP2D Missense_Mutation p.L292F 0.11 deleterious(0) probably_damaging(0.948) TCGA-56-6545-01 6 54804947 54804947 A G FAM83B Missense_Mutation p.Q393R 0.08 tolerated(0.29) benign(0.008) TCGA-56-6545-01 7 100389710 100389710 C A ZAN Missense_Mutation p.A2550E 0.24 unknown(0) TCGA-56-6545-01 7 11441494 11441494 G T THSD7A Missense_Mutation p.P1447T 0.23 tolerated(0.33) benign(0.045) TCGA-56-6545-01 7 128483512 128483512 G - FLNC Frame_Shift_Del p.G898Afs*24 0.25 TCGA-56-6545-01 7 138456011 138456011 T C ATP6V0A4 Splice_Site 0.30 TCGA-56-6545-01 7 13946086 13946086 C A ETV1 Missense_Mutation p.G360V 0.30 deleterious(0.03) probably_damaging(1) TCGA-56-6545-01 7 142572280 142572280 G C TRPV6 Missense_Mutation p.F472L 0.32 deleterious(0.01) possibly_damaging(0.521) TCGA-56-6545-01 7 142749511 142749511 T A OR6V1 Missense_Mutation p.L25Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-56-6545-01 7 147336310 147336310 C A CNTNAP2 Missense_Mutation p.D670E 0.17 tolerated(1) benign(0.001) TCGA-56-6545-01 7 20199737 20199737 G T MACC1 Missense_Mutation p.Q83K 0.10 tolerated(0.18) benign(0.012) TCGA-56-6545-01 7 21469531 21469531 C T SP4 Nonsense_Mutation p.Q250* 0.16 TCGA-56-6545-01 7 30695252 30695252 C T CRHR2 Missense_Mutation p.D360N 0.13 deleterious(0.03) probably_damaging(0.999) TCGA-56-6545-01 7 31683478 31683478 T C CCDC129 Missense_Mutation p.C858R 0.36 tolerated(0.19) possibly_damaging(0.477) TCGA-56-6545-01 7 43594272 43594272 T A HECW1 Missense_Mutation p.L1531Q 0.16 deleterious(0) probably_damaging(1) TCGA-56-6545-01 7 54610352 54610352 C T VSTM2A 5'UTR 0.11 TCGA-56-6545-01 7 55912272 55912272 C G SEPT14 Missense_Mutation p.L105F 0.68 deleterious(0) probably_damaging(1) TCGA-56-6545-01 7 66489962 66489962 G A TYW1 Missense_Mutation p.D313N 0.05 deleterious(0) probably_damaging(1) TCGA-56-6545-01 7 72657874 72657874 C T GTF2IRD2P1 RNA 0.05 TCGA-56-6545-01 7 88966163 88966163 A T ZNF804B Silent p.T1289T 0.18 TCGA-56-6545-01 7 97362024 97362024 T A TAC1 Missense_Mutation p.W34R 0.16 tolerated(0.08) probably_damaging(1) TCGA-56-6545-01 7 99084537 99084537 G C ZNF789 Missense_Mutation p.G235A 0.11 deleterious(0) probably_damaging(0.999) TCGA-56-6545-01 8 11189510 11189510 T C SLC35G5 Missense_Mutation p.Y299H 0.07 tolerated(0.2) possibly_damaging(0.562) TCGA-56-6545-01 8 113275901 113275901 C T CSMD3 Missense_Mutation p.G3277S 0.40 deleterious(0.01) probably_damaging(0.998) TCGA-56-6545-01 8 120774748 120774748 A T TAF2 Nonsense_Mutation p.L822* 0.11 TCGA-56-6545-01 8 139164354 139164354 G C FAM135B Silent p.T788T 0.11 TCGA-56-6545-01 8 142367828 142367828 C A GPR20 Missense_Mutation p.A66S 0.18 deleterious(0.04) benign(0.171) TCGA-56-6545-01 8 145745721 145745721 A G LRRC14 Silent p.V143V 0.09 TCGA-56-6545-01 8 29003964 29003964 C T KIF13B Silent p.E706E 0.22 TCGA-56-6545-01 8 38677880 38677880 G T TACC1 Missense_Mutation p.R373L 0.11 tolerated(0.18) benign(0.051) TCGA-56-6545-01 8 41791206 41791206 T A KAT6A Missense_Mutation p.Q1511L 0.11 unknown(0) TCGA-56-6545-01 8 6794261 6794261 A G DEFA4 Missense_Mutation p.L54P 0.21 tolerated(0.1) benign(0.052) TCGA-56-6545-01 8 87755727 87755727 C A CNGB3 Missense_Mutation p.Q43H 0.39 deleterious(0) probably_damaging(0.997) TCGA-56-6545-01 9 135961732 135961732 G C CELP RNA 0.42 TCGA-56-6545-01 9 136307599 136307599 G C ADAMTS13 Missense_Mutation p.R683P 0.26 tolerated(0.29) benign(0.002) TCGA-56-6545-01 X 101396002 101396002 G A TCEAL6 Missense_Mutation p.P101L 0.20 tolerated(0.08) benign(0.047) TCGA-56-6545-01 X 103042767 103042767 T C PLP1 Missense_Mutation p.L165P 0.03 deleterious(0.03) probably_damaging(0.987) TCGA-56-6545-01 X 105139491 105139491 G T NRK Silent p.L185L 0.23 TCGA-56-6545-01 X 105169003 105169003 G T NRK Missense_Mutation p.D1099Y 0.23 deleterious(0.02) possibly_damaging(0.714) TCGA-56-6545-01 X 105868450 105868450 G T CXorf57 Missense_Mutation p.S306I 0.23 deleterious(0) probably_damaging(0.998) TCGA-56-6545-01 X 106046203 106046203 G A TBC1D8B Silent p.G40G 0.29 TCGA-56-6545-01 X 106097468 106097468 G A TBC1D8B Missense_Mutation p.R765H 0.21 deleterious(0) probably_damaging(0.987) TCGA-56-6545-01 X 118370482 118370482 G T PGRMC1 Silent p.A52A 0.17 TCGA-56-6545-01 X 118708716 118708716 G T UBE2A Missense_Mutation p.K14N 0.15 deleterious(0.04) benign(0.409) TCGA-56-6545-01 X 119387961 119387961 C A ZBTB33 Missense_Mutation p.P231T 0.09 deleterious(0.02) benign(0.437) TCGA-56-6545-01 X 119660631 119660631 G T CUL4B Nonsense_Mutation p.Y909* 0.14 TCGA-56-6545-01 X 120181474 120181474 C A GLUD2 5'UTR 0.22 TCGA-56-6545-01 X 122772854 122772854 C G THOC2 Missense_Mutation p.D591H 0.25 deleterious(0) probably_damaging(0.998) TCGA-56-6545-01 X 123156423 123156423 C A STAG2 5'UTR 0.30 TCGA-56-6545-01 X 123227995 123227995 G C STAG2 Splice_Site p.X1235_splice 0.23 TCGA-56-6545-01 X 123518143 123518143 C A TENM1 Missense_Mutation p.G2213V 0.22 deleterious(0.04) probably_damaging(0.99) TCGA-56-6545-01 X 123518144 123518144 C T TENM1 Missense_Mutation p.G2213R 0.21 deleterious(0) possibly_damaging(0.867) TCGA-56-6545-01 X 129759197 129759197 C T ENOX2 3'UTR 0.33 TCGA-56-6545-01 X 140984215 140984215 A C MAGEC3 Intron 0.36 TCGA-56-6545-01 X 145109344 145109344 G T MIR891A RNA 0.14 TCGA-56-6545-01 X 148627157 148627157 G T CXorf40A 5'UTR 0.16 TCGA-56-6545-01 X 151900625 151900625 G A MAGEA12 Missense_Mutation p.P59L 0.21 tolerated(0.31) benign(0.005) TCGA-56-6545-01 X 152612647 152612647 G A ZNF275 Silent p.A168A 0.09 TCGA-56-6545-01 X 15287980 15287980 C A ASB9 Missense_Mutation p.G6V 0.10 tolerated_low_confidence(0.27) benign(0.039) TCGA-56-6545-01 X 15287981 15287981 C G ASB9 Missense_Mutation p.G6R 0.10 tolerated_low_confidence(0.56) benign(0.001) TCGA-56-6545-01 X 154448556 154448556 G A VBP1 Missense_Mutation p.E64K 0.14 deleterious(0) possibly_damaging(0.63) TCGA-56-6545-01 X 1585301 1585301 G T P2RY8 Missense_Mutation p.R51S 0.20 tolerated(0.06) benign(0.209) TCGA-56-6545-01 X 22292418 22292418 G A ZNF645 3'UTR 0.25 TCGA-56-6545-01 X 30237316 30237316 C A MAGEB2 Missense_Mutation p.L207I 0.26 tolerated(0.32) probably_damaging(0.951) TCGA-56-6545-01 X 48887486 48887486 C - TFE3 3'UTR 0.24 TCGA-56-6545-01 X 49068374 49068374 C A CACNA1F Missense_Mutation p.V1373L 0.19 tolerated(0.07) probably_damaging(0.918) TCGA-56-6545-01 X 50350935 50350935 G T SHROOM4 Missense_Mutation p.S1069R 0.28 deleterious(0.04) benign(0.394) TCGA-56-6545-01 X 50351168 50351168 T C SHROOM4 Missense_Mutation p.K992E 0.10 tolerated(0.09) benign(0.087) TCGA-56-6545-01 X 62570029 62570029 C T SPIN4 Missense_Mutation p.V224M 0.23 deleterious(0.03) possibly_damaging(0.652) TCGA-56-6545-01 X 68383037 68383037 T A PJA1 Silent p.G15G 0.25 TCGA-56-6545-01 X 69712107 69712107 G A DLG3 Silent p.Q557Q 0.23 TCGA-56-6545-01 X 70351454 70351454 A C MED12 Missense_Mutation p.K1368Q 0.21 possibly_damaging(0.636) TCGA-56-6545-01 X 71802349 71802349 C G PHKA1 Missense_Mutation p.V1133L 0.11 tolerated(0.11) possibly_damaging(0.468) TCGA-56-6545-01 X 73811707 73811707 G A RLIM Silent p.S481S 0.27 TCGA-56-6545-01 X 74644568 74644568 C A ZDHHC15 Missense_Mutation p.V219L 0.21 deleterious(0.05) benign(0.06) TCGA-56-6545-01 X 78216935 78216935 C T P2RY10 Silent p.Y306Y 0.23 TCGA-56-6545-01 X 78217080 78217080 C A P2RY10 3'UTR 0.30 TCGA-56-6545-01 X 78618572 78618572 C A ITM2A Missense_Mutation p.G103V 0.24 tolerated(0.15) benign(0.002) TCGA-56-6545-01 X 86067949 86067949 G T DACH2 Missense_Mutation p.G444V 0.25 deleterious(0.02) benign(0.434) TCGA-56-6545-01 X 91133468 91133468 C G PCDH11X Missense_Mutation p.D743E 0.13 deleterious(0.03) probably_damaging(0.998) TCGA-56-6545-01 X 99924320 99924320 C A SRPX2 Missense_Mutation p.R391S 0.21 deleterious(0) probably_damaging(0.97) TCGA-56-6546-01 10 1041879 1041879 C T GTPBP4 Missense_Mutation p.P77L 0.25 deleterious(0) probably_damaging(1) TCGA-56-6546-01 10 121691695 121691695 A C SEC23IP Missense_Mutation p.I875L 0.42 tolerated(0.74) benign(0.019) TCGA-56-6546-01 10 18087655 18087655 G T TMEM236 3'UTR 0.27 TCGA-56-6546-01 10 37430821 37430821 G A ANKRD30A Silent p.V276V 0.29 TCGA-56-6546-01 10 50741019 50741019 G A ERCC6-PGBD3 5'UTR 0.35 TCGA-56-6546-01 10 50870818 50870818 C A CHAT Missense_Mutation p.S656Y 0.33 deleterious(0.01) probably_damaging(1) TCGA-56-6546-01 10 87373316 87373316 C A GRID1 Missense_Mutation p.A817S 0.29 tolerated(0.36) benign(0.003) TCGA-56-6546-01 10 89717716 89717716 A C PTEN Missense_Mutation p.L247F 0.23 deleterious(0.03) possibly_damaging(0.665) TCGA-56-6546-01 10 89717718 89717718 C A PTEN Missense_Mutation p.P248H 0.24 tolerated(0.06) probably_damaging(0.926) TCGA-56-6546-01 11 11964541 11964541 A C USP47 Missense_Mutation p.E923D 0.24 tolerated(0.31) benign(0.031) TCGA-56-6546-01 11 120673443 120673443 C A GRIK4 Silent p.R42R 0.16 TCGA-56-6546-01 11 120827614 120827614 C G GRIK4 Missense_Mutation p.S609C 0.24 tolerated(0.06) probably_damaging(0.999) TCGA-56-6546-01 11 124740079 124740079 G T ROBO3 Missense_Mutation p.R262L 0.12 deleterious(0.01) probably_damaging(0.919) TCGA-56-6546-01 11 124857197 124857197 G T CCDC15 Missense_Mutation p.D359Y 0.13 deleterious(0.01) probably_damaging(0.956) TCGA-56-6546-01 11 128680902 128680902 C T FLI1 3'UTR 0.15 TCGA-56-6546-01 11 134127012 134127012 G A ACAD8 Missense_Mutation p.A81T 0.13 deleterious(0.05) possibly_damaging(0.904) TCGA-56-6546-01 11 16007843 16007843 G A SOX6 Missense_Mutation p.T677I 0.09 deleterious(0) probably_damaging(0.999) TCGA-56-6546-01 11 18195179 18195179 T A MRGPRX4 Missense_Mutation p.W126R 0.13 deleterious(0.03) benign(0.111) TCGA-56-6546-01 11 35287091 35287091 T A SLC1A2 Missense_Mutation p.I546L 0.17 tolerated_low_confidence(0.76) benign(0) TCGA-56-6546-01 11 45265746 45265746 C A SYT13 Missense_Mutation p.G380C 0.21 tolerated(0.05) benign(0.03) TCGA-56-6546-01 11 46726892 46726892 G C ZNF408 Missense_Mutation p.G548R 0.11 deleterious(0) probably_damaging(1) TCGA-56-6546-01 11 47365127 47365127 T A MYBPC3 Missense_Mutation p.K380M 0.25 deleterious(0) probably_damaging(0.98) TCGA-56-6546-01 11 48267133 48267133 T C OR4X2 Missense_Mutation p.F160L 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-56-6546-01 11 50003572 50003572 T C OR4C12 Missense_Mutation p.I156V 0.18 tolerated_low_confidence(0.16) benign(0.058) TCGA-56-6546-01 11 5020628 5020628 C G OR51L1 Missense_Mutation p.T139S 0.18 deleterious(0.01) benign(0.341) TCGA-56-6546-01 11 55890376 55890376 C T OR8H3 Silent p.H176H 0.07 TCGA-56-6546-01 11 56344762 56344762 T C OR5M10 Missense_Mutation p.T146A 0.23 tolerated(0.96) benign(0.007) TCGA-56-6546-01 11 56409758 56409758 A T OR5AP2 Missense_Mutation p.V53E 0.23 tolerated(0.05) benign(0.123) TCGA-56-6546-01 11 5663637 5663637 A G TRIM34 Missense_Mutation p.S259G 0.12 deleterious(0.02) benign(0.109) TCGA-56-6546-01 11 5878630 5878630 T A OR52E8 Silent p.G101G 0.16 TCGA-56-6546-01 11 61404962 61404962 G A RPLP0P2 RNA 0.29 TCGA-56-6546-01 11 61503811 61503814 GGGC - DAGLA Frame_Shift_Del p.G454Efs*12 0.14 TCGA-56-6546-01 11 6191058 6191058 G T OR52B2 Silent p.R167R 0.18 TCGA-56-6546-01 11 62298001 62298001 A T AHNAK Missense_Mutation p.D1296E 0.17 benign(0.072) TCGA-56-6546-01 11 65063653 65063653 G C POLA2 Intron 0.17 TCGA-56-6546-01 11 66055104 66055104 C A YIF1A Missense_Mutation p.R131L 0.22 deleterious(0) possibly_damaging(0.906) TCGA-56-6546-01 11 66391822 66391822 G C RBM14 Missense_Mutation p.V159L 0.10 tolerated(0.3) benign(0.048) TCGA-56-6546-01 11 67203589 67203589 C A PTPRCAP Missense_Mutation p.R79L 0.24 deleterious(0.03) benign(0.031) TCGA-56-6546-01 11 71208566 71208566 A G NADSYN1 Missense_Mutation p.Y601C 0.22 deleterious(0.01) benign(0.066) TCGA-56-6546-01 11 7334699 7334699 C A SYT9 Missense_Mutation p.Q191K 0.17 tolerated(0.28) benign(0.079) TCGA-56-6546-01 11 89431764 89431764 C A FOLH1B RNA 0.11 TCGA-56-6546-01 12 104171830 104171830 T C NT5DC3 Missense_Mutation p.Q475R 0.18 tolerated(0.14) benign(0.098) TCGA-56-6546-01 12 11034868 11034868 G A PRH1 Missense_Mutation p.P156L 0.12 tolerated_low_confidence(0.09) unknown(0) TCGA-56-6546-01 12 122292650 122292650 G - HPD Frame_Shift_Del p.Q125Kfs*7 0.17 TCGA-56-6546-01 12 13716470 13716470 C T GRIN2B Silent p.S1234S 0.17 TCGA-56-6546-01 12 20806910 20806910 C T PDE3A Silent p.P985P 0.19 TCGA-56-6546-01 12 21392004 21392004 G T SLCO1B1 Nonsense_Mutation p.E653* 0.10 TCGA-56-6546-01 12 2800348 2800348 T G CACNA1C Missense_Mutation p.Y2182D 0.20 deleterious_low_confidence(0.03) benign(0.02) TCGA-56-6546-01 12 33021918 33021918 A G PKP2 Silent p.S371S 0.21 TCGA-56-6546-01 12 40681156 40681156 T C LRRK2 Missense_Mutation p.I835T 0.16 tolerated(0.75) benign(0) TCGA-56-6546-01 12 41967358 41967358 C G PDZRN4 Missense_Mutation p.T926S 0.27 deleterious(0) probably_damaging(0.993) TCGA-56-6546-01 12 46244007 46244007 A T ARID2 Missense_Mutation p.T701S 0.20 tolerated_low_confidence(0.51) possibly_damaging(0.708) TCGA-56-6546-01 12 46592460 46592460 C A SLC38A1 Missense_Mutation p.R357L 0.17 deleterious(0) possibly_damaging(0.477) TCGA-56-6546-01 12 49723709 49723709 C A TROAP Missense_Mutation p.P412T 0.19 deleterious(0.05) benign(0.131) TCGA-56-6546-01 12 54379715 54379715 A G HOXC10 Silent p.K224K 0.22 TCGA-56-6546-01 12 56489049 56489049 G A ERBB3 Missense_Mutation p.G623E 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-56-6546-01 12 56490217 56490217 A G ERBB3 Intron 0.23 TCGA-56-6546-01 12 60168512 60168512 G T SLC16A7 Missense_Mutation p.A146S 0.18 deleterious(0) probably_damaging(1) TCGA-56-6546-01 12 70194074 70194074 A T RAB3IP Missense_Mutation p.Y341F 0.15 tolerated(0.12) probably_damaging(0.976) TCGA-56-6546-01 12 7528442 7528442 C A CD163L1 Missense_Mutation p.G847V 0.22 deleterious(0.02) probably_damaging(0.997) TCGA-56-6546-01 12 7633838 7633838 C A CD163 Nonsense_Mutation p.E1088* 0.18 TCGA-56-6546-01 12 78444913 78444913 T A NAV3 Missense_Mutation p.D834E 0.19 tolerated(0.06) benign(0.263) TCGA-56-6546-01 12 78582517 78582517 C A NAV3 Nonsense_Mutation p.Y1983* 0.16 TCGA-56-6546-01 12 95668562 95668562 G A VEZT Missense_Mutation p.C298Y 0.20 deleterious(0) probably_damaging(0.992) TCGA-56-6546-01 12 9985926 9985926 A G KLRF1 Missense_Mutation p.Q71R 0.21 tolerated(0.31) benign(0.045) TCGA-56-6546-01 13 29005411 29005411 G T FLT1 Missense_Mutation p.Q284K 0.32 tolerated(0.27) benign(0.008) TCGA-56-6546-01 13 99092415 99092415 A G FARP1 Missense_Mutation p.Q852R 0.24 tolerated(0.24) benign(0.002) TCGA-56-6546-01 14 19377657 19377657 G T OR11H12 Missense_Mutation p.A22S 0.15 tolerated(1) benign(0.002) TCGA-56-6546-01 14 20389730 20389730 T A OR4K5 Missense_Mutation p.F322Y 0.14 tolerated_low_confidence(0.51) benign(0.038) TCGA-56-6546-01 14 22315210 22315210 C G TRAV8-2 Missense_Mutation p.P50A 0.23 tolerated(0.07) benign(0.263) TCGA-56-6546-01 14 23887604 23887604 G C MYH7 Silent p.A1328A 0.12 TCGA-56-6546-01 14 38724724 38724724 G A CLEC14A Silent p.G168G 0.12 TCGA-56-6546-01 14 54417180 54417181 - CC BMP4 Frame_Shift_Ins p.A266Gfs*20 0.14 TCGA-56-6546-01 14 56757046 56757046 G A PELI2 Missense_Mutation p.V190I 0.16 tolerated(0.21) benign(0.079) TCGA-56-6546-01 14 57746974 57746974 C G AP5M1 Missense_Mutation p.S261C 0.14 deleterious(0.04) probably_damaging(0.984) TCGA-56-6546-01 14 58606016 58606016 C A C14orf37 Missense_Mutation p.V21F 0.17 tolerated(1) benign(0.029) TCGA-56-6546-01 14 67831577 67831577 G A EIF2S1 Silent p.G31G 0.19 TCGA-56-6546-01 14 70826258 70826258 A T COX16 Missense_Mutation p.L16H 0.18 deleterious(0) probably_damaging(0.943) TCGA-56-6546-01 14 73406560 73406560 A G DCAF4 Missense_Mutation p.D48G 0.25 tolerated(0.34) benign(0.002) TCGA-56-6546-01 14 93685054 93685054 C T UBR7 Silent p.A261A 0.22 TCGA-56-6546-01 14 99182725 99182725 G C C14orf177 Missense_Mutation p.C66S 0.18 deleterious_low_confidence(0) benign(0.291) TCGA-56-6546-01 15 23262302 23262302 T A GOLGA8I Missense_Mutation p.L387M 0.18 deleterious(0.01) probably_damaging(0.992) TCGA-56-6546-01 15 23931755 23931755 C A NDN Missense_Mutation p.G204C 0.18 deleterious(0.03) probably_damaging(1) TCGA-56-6546-01 15 25307535 25307535 G T SNORD116-5 RNA 0.19 TCGA-56-6546-01 15 25940176 25940176 G T ATP10A Missense_Mutation p.P960T 0.14 tolerated(0.14) benign(0.028) TCGA-56-6546-01 15 27184554 27184554 C G GABRA5 Intron 0.19 TCGA-56-6546-01 15 27572065 27572065 G C GABRG3 Missense_Mutation p.W127S 0.11 deleterious(0) probably_damaging(0.999) TCGA-56-6546-01 15 28511069 28511069 C - HERC2 Frame_Shift_Del p.K551Sfs*47 0.18 TCGA-56-6546-01 15 33990158 33990158 G T RYR3 Missense_Mutation p.M2070I 0.10 possibly_damaging(0.692) TCGA-56-6546-01 15 34015031 34015031 G T RYR3 Missense_Mutation p.Q2245H 0.21 benign(0.308) TCGA-56-6546-01 15 34015032 34015032 G T RYR3 Missense_Mutation p.G2246C 0.21 possibly_damaging(0.664) TCGA-56-6546-01 15 42057152 42057152 C T MGA Missense_Mutation p.L2605F 0.22 deleterious(0) probably_damaging(0.999) TCGA-56-6546-01 15 43281054 43281054 C A UBR1 Silent p.L1320L 0.28 TCGA-56-6546-01 15 55972345 55972345 C T PRTG Missense_Mutation p.V294I 0.28 tolerated(0.29) benign(0.074) TCGA-56-6546-01 15 63481791 63481791 C T RAB8B 5'UTR 0.26 TCGA-56-6546-01 15 64791618 64791618 G T ZNF609 5'UTR 0.14 TCGA-56-6546-01 15 65153739 65153739 C T AC069368.3 Nonsense_Mutation p.R150* 0.15 TCGA-56-6546-01 15 77908027 77908027 G C LINGO1 Silent p.R74R 0.25 TCGA-56-6546-01 15 85681166 85681166 G A PDE8A 3'UTR 0.35 TCGA-56-6546-01 16 19451423 19451423 G C TMC5 Silent p.G21G 0.13 TCGA-56-6546-01 16 21215489 21215489 T C ZP2 Silent p.P278P 0.22 TCGA-56-6546-01 16 28181118 28181118 C A XPO6 Missense_Mutation p.R173L 0.19 tolerated(0.22) benign(0.026) TCGA-56-6546-01 16 29888632 29888632 T A SEZ6L2 Silent p.P623P 0.10 TCGA-56-6546-01 16 30899246 30899246 T A BCL7C Silent p.T198T 0.15 TCGA-56-6546-01 16 31230814 31230814 G C TRIM72 Missense_Mutation p.D231H 0.21 tolerated(0.07) probably_damaging(0.945) TCGA-56-6546-01 16 3293469 3293469 G T MEFV Missense_Mutation p.S673Y 0.22 deleterious(0) probably_damaging(0.987) TCGA-56-6546-01 16 3639942 3639942 C A SLX4 Missense_Mutation p.G1233W 0.14 tolerated(0.17) benign(0.081) TCGA-56-6546-01 16 55734196 55734196 G T SLC6A2 Missense_Mutation p.S579I 0.19 tolerated(0.53) benign(0.077) TCGA-56-6546-01 16 56466539 56466539 C A NUDT21 3'UTR 0.19 TCGA-56-6546-01 16 61687488 61687488 C A CDH8 3'UTR 0.11 TCGA-56-6546-01 16 66944196 66944196 C A CDH16 Missense_Mutation p.V712L 0.31 tolerated(0.2) benign(0.034) TCGA-56-6546-01 16 68087518 68087518 G A DUS2 Missense_Mutation p.R75H 0.15 deleterious(0) possibly_damaging(0.746) TCGA-56-6546-01 16 70531872 70531872 C A COG4 Nonsense_Mutation p.E428* 0.12 TCGA-56-6546-01 16 70531873 70531873 C A COG4 Missense_Mutation p.M427I 0.11 deleterious(0.02) probably_damaging(0.915) TCGA-56-6546-01 16 72162993 72162993 C A PMFBP1 Missense_Mutation p.R641L 0.10 tolerated(0.05) possibly_damaging(0.703) TCGA-56-6546-01 16 84050258 84050258 C A SLC38A8 Missense_Mutation p.G343V 0.17 tolerated(0.11) probably_damaging(0.965) TCGA-56-6546-01 16 84209883 84209896 CTTCCTTGCAGCCT - DNAAF1 Frame_Shift_Del p.L683Sfs*5 0.20 TCGA-56-6546-01 17 10428931 10428931 G T MYH2 Silent p.I1458I 0.36 TCGA-56-6546-01 17 10438500 10438500 C A MYH2 Missense_Mutation p.M690I 0.30 tolerated(0.1) benign(0.081) TCGA-56-6546-01 17 10438501 10438501 A T MYH2 Missense_Mutation p.M690K 0.31 deleterious(0) probably_damaging(0.949) TCGA-56-6546-01 17 21318931 21318931 G T KCNJ12 Missense_Mutation p.A93S 0.06 tolerated(0.06) benign(0.155) TCGA-56-6546-01 17 33520925 33520925 G A SLC35G3 Silent p.R134R 0.32 TCGA-56-6546-01 17 35921351 35921351 C A SYNRG Missense_Mutation p.D537Y 0.28 deleterious(0) probably_damaging(0.943) TCGA-56-6546-01 17 39525936 39525937 - T KRT33B Frame_Shift_Ins p.P23Tfs*89 0.18 TCGA-56-6546-01 17 39775851 39775851 G A KRT17 Missense_Mutation p.R432C 0.10 deleterious_low_confidence(0) benign(0.226) TCGA-56-6546-01 17 42286844 42286844 T - UBTF Frame_Shift_Del p.K594Rfs*63 0.20 TCGA-56-6546-01 17 60743550 60743550 C T MRC2 Missense_Mutation p.R206C 0.40 deleterious(0) probably_damaging(1) TCGA-56-6546-01 17 72346634 72346634 G T KIF19 Silent p.V436V 0.43 TCGA-56-6546-01 17 72356212 72356212 C T BTBD17 Silent p.L86L 0.16 TCGA-56-6546-01 17 7578395 7578395 G A TP53 Missense_Mutation p.H179Y 0.36 deleterious(0) probably_damaging(1) TCGA-56-6546-01 17 76694409 76694409 C A CYTH1 Silent p.G251G 0.31 TCGA-56-6546-01 17 80037473 80037473 C T FASN Silent p.A2386A 0.31 TCGA-56-6546-01 18 14479250 14479250 C A CXADRP3 RNA 0.27 TCGA-56-6546-01 18 28934436 28934436 A T DSG1 Silent p.A759A 0.14 TCGA-56-6546-01 18 28980857 28980857 C T DSG4 Missense_Mutation p.H431Y 0.13 tolerated(0.07) benign(0.148) TCGA-56-6546-01 18 31226214 31226214 G A ASXL3 Silent p.E84E 0.24 TCGA-56-6546-01 18 44580782 44580782 C T KATNAL2 Missense_Mutation p.P30L 0.21 tolerated(0.34) benign(0.002) TCGA-56-6546-01 18 61627505 61627505 T C HMSD Silent p.T112T 0.20 TCGA-56-6546-01 18 70205524 70205524 C A CBLN2 Missense_Mutation p.V188L 0.24 deleterious(0) probably_damaging(0.94) TCGA-56-6546-01 19 12433494 12433494 T C ZNF563 Missense_Mutation p.N12S 0.03 tolerated(0.09) possibly_damaging(0.903) TCGA-56-6546-01 19 13029085 13029085 G T SYCE2 Missense_Mutation p.P28T 0.31 tolerated_low_confidence(0.27) benign(0.022) TCGA-56-6546-01 19 1820350 1820350 G A REXO1 Silent p.V813V 0.29 TCGA-56-6546-01 19 19162527 19162527 G T ARMC6 Missense_Mutation p.A126S 0.27 tolerated(0.16) benign(0.151) TCGA-56-6546-01 19 21950257 21950257 G A ZNF100 5'UTR 0.37 TCGA-56-6546-01 19 22155968 22155968 G T ZNF208 Missense_Mutation p.T623N 0.13 tolerated(0.58) benign(0) TCGA-56-6546-01 19 22364110 22364110 C G ZNF676 Missense_Mutation p.G137R 0.13 tolerated(0.11) probably_damaging(0.999) TCGA-56-6546-01 19 22939855 22939855 T C ZNF99 3'Flank 0.19 TCGA-56-6546-01 19 31039105 31039105 C T ZNF536 Missense_Mutation p.T860I 0.19 tolerated(0.05) benign(0.1) TCGA-56-6546-01 19 35761435 35761435 C A USF2 Missense_Mutation p.A172E 0.30 deleterious(0.03) probably_damaging(0.979) TCGA-56-6546-01 19 35761436 35761436 G T USF2 Silent p.A172A 0.31 TCGA-56-6546-01 19 36367439 36367439 G T APLP1 Silent p.V455V 0.21 TCGA-56-6546-01 19 3778348 3778348 C G MATK Missense_Mutation p.V454L 0.15 tolerated(0.13) benign(0.032) TCGA-56-6546-01 19 38610204 38610204 C G SIPA1L3 Silent p.T850T 0.22 TCGA-56-6546-01 19 41235273 41235273 G T ITPKC Silent p.L474L 0.19 TCGA-56-6546-01 19 41932672 41932672 G A B3GNT8 Silent p.P4P 0.11 TCGA-56-6546-01 19 42132287 42132287 T C CEACAM4 Missense_Mutation p.I38V 0.26 tolerated(0.54) benign(0.23) TCGA-56-6546-01 19 42583419 42583419 C T ZNF574 Nonsense_Mutation p.Q221* 0.25 TCGA-56-6546-01 19 42910529 42910529 C G LIPE Missense_Mutation p.E717Q 0.26 tolerated(0.05) possibly_damaging(0.589) TCGA-56-6546-01 19 43258724 43258724 G T PSG8 Missense_Mutation p.P335H 0.28 deleterious(0) probably_damaging(1) TCGA-56-6546-01 19 46136217 46136217 G A EML2 Missense_Mutation p.H339Y 0.21 deleterious(0.02) probably_damaging(0.972) TCGA-56-6546-01 19 46842972 46842972 G T HIF3A 3'UTR 0.20 TCGA-56-6546-01 19 50099655 50099655 A G PRR12 Missense_Mutation p.Y688C 0.24 possibly_damaging(0.878) TCGA-56-6546-01 19 51362888 51362888 G T KLK3 Intron 0.26 TCGA-56-6546-01 19 51647760 51647760 G T SIGLEC7 Silent p.G177G 0.18 TCGA-56-6546-01 19 51728798 51728798 A G CD33 Missense_Mutation p.E121G 0.20 deleterious(0) possibly_damaging(0.735) TCGA-56-6546-01 19 52793634 52793634 G T ZNF766 Missense_Mutation p.R197I 0.12 tolerated(0.16) benign(0.119) TCGA-56-6546-01 19 54313082 54313082 A T NLRP12 Missense_Mutation p.L611M 0.29 deleterious(0) probably_damaging(0.999) TCGA-56-6546-01 19 54313593 54313593 C A NLRP12 Silent p.L440L 0.16 TCGA-56-6546-01 19 54722671 54722671 G T LILRB3 Missense_Mutation p.A488D 0.26 tolerated(0.05) probably_damaging(0.999) TCGA-56-6546-01 19 54758731 54758731 A G LILRB5 Silent p.Y374Y 0.23 TCGA-56-6546-01 19 54974148 54974149 - GGCA LENG9 Frame_Shift_Ins p.P210Cfs*38 0.37 TCGA-56-6546-01 19 55220655 55220655 G A AC098784.2 3'Flank 0.23 TCGA-56-6546-01 19 55530042 55530042 G C GP6 Missense_Mutation p.F234L 0.31 tolerated_low_confidence(0.48) benign(0.004) TCGA-56-6546-01 19 56419214 56419214 A T NLRP13 Silent p.T797T 0.31 TCGA-56-6546-01 19 56424444 56424444 G A NLRP13 Nonsense_Mutation p.Q247* 0.23 TCGA-56-6546-01 19 57133934 57133934 G A ZNF71 Missense_Mutation p.E427K 0.36 tolerated(0.44) probably_damaging(0.992) TCGA-56-6546-01 19 9065628 9065628 C G MUC16 Missense_Mutation p.G7273A 0.27 unknown(0) TCGA-56-6546-01 1 110714798 110714798 A G SLC6A17 Missense_Mutation p.I135V 0.27 tolerated(0.27) benign(0.008) TCGA-56-6546-01 1 11087244 11087244 A T MASP2 Missense_Mutation p.Y587N 0.14 tolerated(0.07) possibly_damaging(0.889) TCGA-56-6546-01 1 111857923 111857923 C A CHIA Missense_Mutation p.R116S 0.19 deleterious(0) probably_damaging(0.991) TCGA-56-6546-01 1 111996876 111996877 - T ATP5F1 Frame_Shift_Ins p.V42Cfs*8 0.08 TCGA-56-6546-01 1 114483113 114483113 G T HIPK1 Missense_Mutation p.Q36H 0.14 tolerated(0.09) possibly_damaging(0.719) TCGA-56-6546-01 1 117158964 117158964 C G IGSF3 Missense_Mutation p.Q53H 0.23 deleterious(0) probably_damaging(0.952) TCGA-56-6546-01 1 145532483 145532483 G T ITGA10 Missense_Mutation p.Q312H 0.13 deleterious(0.01) benign(0.119) TCGA-56-6546-01 1 154033493 154033493 A T NUP210L Missense_Mutation p.D891E 0.12 tolerated(0.19) benign(0.024) TCGA-56-6546-01 1 155252499 155252499 G - HCN3 Frame_Shift_Del p.E193Sfs*24 0.21 TCGA-56-6546-01 1 155255711 155255711 G T HCN3 Missense_Mutation p.R478L 0.18 deleterious(0) benign(0.006) TCGA-56-6546-01 1 156568034 156568034 T A GPATCH4 Silent p.V82V 0.13 TCGA-56-6546-01 1 158669890 158669890 G T OR6K2 Missense_Mutation p.R185S 0.05 tolerated(1) benign(0.107) TCGA-56-6546-01 1 160385928 160385928 G T VANGL2 Missense_Mutation p.G50W 0.15 tolerated(0.06) probably_damaging(0.998) TCGA-56-6546-01 1 166991004 166991004 A G MAEL Missense_Mutation p.N406S 0.20 tolerated_low_confidence(1) benign(0.005) TCGA-56-6546-01 1 171765854 171765854 G T METTL13 Silent p.T686T 0.24 TCGA-56-6546-01 1 172437807 172437807 A T C1orf105 3'UTR 0.15 TCGA-56-6546-01 1 176563806 176563806 C A PAPPA2 Missense_Mutation p.H356N 0.19 tolerated(0.22) benign(0.026) TCGA-56-6546-01 1 17953966 17953966 A T ARHGEF10L Nonsense_Mutation p.K518* 0.16 TCGA-56-6546-01 1 179983508 179983508 T C CEP350 Silent p.F640F 0.27 TCGA-56-6546-01 1 182026487 182026487 G C ZNF648 Missense_Mutation p.A220G 0.10 tolerated(0.09) benign(0.217) TCGA-56-6546-01 1 185094122 185094122 A C TRMT1L Silent p.P571P 0.10 TCGA-56-6546-01 1 185964039 185964039 C A HMCN1 Missense_Mutation p.P1200T 0.16 probably_damaging(0.999) TCGA-56-6546-01 1 186287912 186287912 G A TPR Missense_Mutation p.S2206L 0.14 possibly_damaging(0.885) TCGA-56-6546-01 1 186646847 186646855 GAAGTGCTG - PTGS2 In_Frame_Del p.Q189_F191del 0.12 TCGA-56-6546-01 1 18809311 18809311 G A KLHDC7A Nonsense_Mutation p.W612* 0.12 TCGA-56-6546-01 1 192617069 192617069 G A RGS13 Missense_Mutation p.E27K 0.07 deleterious(0.02) probably_damaging(0.97) TCGA-56-6546-01 1 208061216 208061216 C A CD34 Missense_Mutation p.G342V 0.09 deleterious(0.02) possibly_damaging(0.766) TCGA-56-6546-01 1 2121260 2121260 G T AL590822.2 5'UTR 0.24 TCGA-56-6546-01 1 22158245 22158245 G T HSPG2 Missense_Mutation p.P3751Q 0.20 probably_damaging(0.997) TCGA-56-6546-01 1 228468290 228468290 C T OBSCN Silent p.L3093L 0.11 TCGA-56-6546-01 1 237730049 237730049 C A RYR2 Missense_Mutation p.R1133S 0.21 benign(0.036) TCGA-56-6546-01 1 247614672 247614672 C G OR2B11 Missense_Mutation p.V205L 0.19 tolerated(0.18) benign(0.253) TCGA-56-6546-01 1 247695546 247695546 G T OR2C3 Missense_Mutation p.Q90K 0.24 tolerated(0.14) benign(0.023) TCGA-56-6546-01 1 248059679 248059679 C A OR2W3 Missense_Mutation p.A264D 0.11 tolerated(0.08) benign(0.002) TCGA-56-6546-01 1 26371674 26371674 C A SLC30A2 Missense_Mutation p.G29C 0.16 deleterious(0.01) possibly_damaging(0.885) TCGA-56-6546-01 1 34174707 34174707 G A CSMD2 Silent p.S1146S 0.21 TCGA-56-6546-01 1 35320824 35320824 C A SMIM12 3'UTR 0.13 TCGA-56-6546-01 1 35334343 35334343 G A DLGAP3 Missense_Mutation p.P783L 0.37 tolerated(0.75) probably_damaging(0.999) TCGA-56-6546-01 1 38227289 38227289 G T EPHA10 Missense_Mutation p.A213D 0.25 tolerated(0.15) probably_damaging(0.995) TCGA-56-6546-01 1 46738151 46738151 A G RAD54L Missense_Mutation p.R395G 0.19 deleterious(0) probably_damaging(0.993) TCGA-56-6546-01 1 55620440 55620440 T A USP24 Silent p.S486S 0.15 TCGA-56-6546-01 1 57395200 57395200 C A C8B Missense_Mutation p.W551C 0.19 deleterious(0) probably_damaging(1) TCGA-56-6546-01 1 6194301 6194301 T C CHD5 Missense_Mutation p.N1011D 0.22 tolerated(0.13) benign(0.298) TCGA-56-6546-01 1 6635260 6635260 C T TAS1R1 Silent p.S356S 0.19 TCGA-56-6546-01 1 67724262 67724262 T C IL23R Silent p.P447P 0.11 TCGA-56-6546-01 1 70502167 70502167 G T LRRC7 Silent p.L678L 0.25 TCGA-56-6546-01 1 79404920 79404920 A T ELTD1 Missense_Mutation p.L117I 0.24 deleterious_low_confidence(0.04) benign(0.012) TCGA-56-6546-01 1 9324427 9324427 A T H6PD Silent p.P625P 0.29 TCGA-56-6546-01 1 94543316 94543316 G T ABCA4 Missense_Mutation p.A495D 0.13 tolerated(0.12) benign(0.003) TCGA-56-6546-01 1 97272495 97272495 T C PTBP2 Silent p.D384D 0.16 TCGA-56-6546-01 20 1961208 1961208 C A PDYN Missense_Mutation p.G176W 0.24 deleterious(0) probably_damaging(1) TCGA-56-6546-01 20 21492742 21492742 G T NKX2-2 Missense_Mutation p.P214Q 0.14 deleterious(0) probably_damaging(0.994) TCGA-56-6546-01 20 23065446 23065446 G T CD93 Missense_Mutation p.P462T 0.13 tolerated(0.05) benign(0.099) TCGA-56-6546-01 20 23433469 23433469 G T CST11 5'UTR 0.19 TCGA-56-6546-01 20 23728519 23728519 G C CST1 Missense_Mutation p.F120L 0.23 deleterious(0) probably_damaging(0.983) TCGA-56-6546-01 20 23731327 23731327 G T CST1 Silent p.T59T 0.17 TCGA-56-6546-01 20 31671440 31671440 G T BPIFB4 Missense_Mutation p.R146M 0.36 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-56-6546-01 20 43836508 43836508 C A SEMG1 Silent p.S190S 0.39 TCGA-56-6546-01 20 44664042 44664042 G A SLC12A5 Splice_Site p.X73_splice 0.32 TCGA-56-6546-01 20 48252781 48252781 C T B4GALT5 3'UTR 0.37 TCGA-56-6546-01 20 50140386 50140386 C T NFATC2 Missense_Mutation p.D132N 0.22 tolerated(0.22) possibly_damaging(0.517) TCGA-56-6546-01 20 55093244 55093244 T - RTFDC1 Frame_Shift_Del p.F282Lfs*43 0.28 TCGA-56-6546-01 20 57019265 57019265 G T VAPB Missense_Mutation p.V236L 0.20 tolerated(0.19) benign(0.184) TCGA-56-6546-01 20 58415482 58415482 A C PHACTR3 Missense_Mutation p.R481S 0.07 deleterious(0) possibly_damaging(0.908) TCGA-56-6546-01 20 60791306 60791306 C T HRH3 Missense_Mutation p.S365N 0.36 deleterious(0) possibly_damaging(0.664) TCGA-56-6546-01 20 62275622 62275622 G T STMN3 Silent p.L20L 0.27 TCGA-56-6546-01 22 17072690 17072690 C A CCT8L2 Missense_Mutation p.A251S 0.15 tolerated(0.38) benign(0.185) TCGA-56-6546-01 22 23482493 23482493 C A RTDR1 Missense_Mutation p.D39Y 0.07 tolerated(0.05) benign(0.257) TCGA-56-6546-01 22 26118334 26118334 C G ADRBK2 Missense_Mutation p.P662A 0.26 tolerated_low_confidence(0.25) benign(0.008) TCGA-56-6546-01 22 26422979 26422979 C A MYO18B Missense_Mutation p.Q2347K 0.19 tolerated(0.4) benign(0) TCGA-56-6546-01 22 41195076 41195076 T A SLC25A17 Silent p.T22T 0.37 TCGA-56-6546-01 2 103040368 103040368 C A IL18RAP Missense_Mutation p.F56L 0.19 tolerated(0.5) benign(0.003) TCGA-56-6546-01 2 108609583 108609583 G T SLC5A7 Nonsense_Mutation p.G150* 0.21 TCGA-56-6546-01 2 113286466 113286466 G T TTL 3'UTR 0.17 TCGA-56-6546-01 2 130910412 130910412 C A SMPD4 Missense_Mutation p.G773C 0.25 deleterious(0) probably_damaging(0.999) TCGA-56-6546-01 2 132021791 132021791 G - POTEE Frame_Shift_Del p.D922Tfs*15 0.08 TCGA-56-6546-01 2 141283417 141283417 G C LRP1B Missense_Mutation p.C2674W 0.18 possibly_damaging(0.892) TCGA-56-6546-01 2 141747209 141747209 C G LRP1B Missense_Mutation p.D888H 0.14 probably_damaging(0.995) TCGA-56-6546-01 2 141806619 141806619 G A LRP1B Silent p.T575T 0.20 TCGA-56-6546-01 2 15307178 15307178 C A NBAS Missense_Mutation p.W2370C 0.27 deleterious(0) probably_damaging(0.999) TCGA-56-6546-01 2 166848466 166848466 G A SCN1A Silent p.S1773S 0.19 TCGA-56-6546-01 2 167094728 167094728 A - SCN9A Frame_Shift_Del p.L1215Rfs*18 0.17 TCGA-56-6546-01 2 167160787 167160787 T C SCN9A Missense_Mutation p.R217G 0.16 deleterious(0) probably_damaging(1) TCGA-56-6546-01 2 168102055 168102055 A T XIRP2 Missense_Mutation p.S1385C 0.18 probably_damaging(0.978) TCGA-56-6546-01 2 170127585 170127585 C G LRP2 Missense_Mutation p.V717L 0.10 benign(0) TCGA-56-6546-01 2 179398873 179398873 A T TTN Missense_Mutation p.C34157S 0.14 TCGA-56-6546-01 2 179451895 179451895 G - TTN Frame_Shift_Del p.P21348Lfs*17 0.18 TCGA-56-6546-01 2 179577633 179577633 C G TTN Missense_Mutation p.S9040T 0.28 TCGA-56-6546-01 2 179592014 179592014 C A TTN Missense_Mutation p.G6693V 0.14 TCGA-56-6546-01 2 182423343 182423343 C T CERKL Missense_Mutation p.R283Q 0.21 tolerated(0.34) benign(0.001) TCGA-56-6546-01 2 182780211 182780211 G A SSFA2 Missense_Mutation p.G615E 0.18 tolerated(0.91) benign(0.05) TCGA-56-6546-01 2 182780729 182780729 A C SSFA2 Missense_Mutation p.M788L 0.12 tolerated(0.3) benign(0) TCGA-56-6546-01 2 189868835 189868835 G A COL3A1 Missense_Mutation p.G930E 0.22 probably_damaging(0.999) TCGA-56-6546-01 2 190728639 190728639 C T PMS1 Missense_Mutation p.P676L 0.17 tolerated(0.17) possibly_damaging(0.461) TCGA-56-6546-01 2 198950737 198950737 G T PLCL1 Silent p.V832V 0.14 TCGA-56-6546-01 2 215645566 215645566 A C BARD1 Missense_Mutation p.S344R 0.22 tolerated(0.24) benign(0.007) TCGA-56-6546-01 2 219558038 219558038 C T STK36 Missense_Mutation p.H707Y 0.24 tolerated(0.05) probably_damaging(0.98) TCGA-56-6546-01 2 220404186 220404186 G A CHPF Silent p.L749L 0.18 TCGA-56-6546-01 2 233272586 233272586 G A ALPPL2 Silent p.R169R 0.22 TCGA-56-6546-01 2 234526456 234526456 G A UGT1A8 Missense_Mutation p.G35R 0.14 deleterious(0) probably_damaging(1) TCGA-56-6546-01 2 27802601 27802601 T A C2orf16 Missense_Mutation p.S1054R 0.25 tolerated(0.22) benign(0.251) TCGA-56-6546-01 2 32476479 32476479 G T NLRC4 Missense_Mutation p.L152M 0.19 tolerated(0.16) possibly_damaging(0.635) TCGA-56-6546-01 2 37376049 37376049 G C EIF2AK2 5'UTR 0.22 TCGA-56-6546-01 2 46014 46014 C G FAM110C Missense_Mutation p.K124N 0.32 deleterious(0) possibly_damaging(0.711) TCGA-56-6546-01 2 48809163 48809163 C G STON1-GTF2A1L Missense_Mutation p.P464R 0.22 deleterious(0.02) benign(0.087) TCGA-56-6546-01 2 73898249 73898249 A G ALMS1P RNA 0.19 TCGA-56-6546-01 2 75874342 75874342 G A MRPL19 Missense_Mutation p.R73H 0.40 tolerated(0.3) benign(0.014) TCGA-56-6546-01 2 85536608 85536608 T A TCF7L1 3'UTR 0.14 TCGA-56-6546-01 2 88474167 88474167 A T THNSL2 Missense_Mutation p.D78V 0.21 deleterious(0.01) possibly_damaging(0.467) TCGA-56-6546-01 2 96040090 96040090 A G KCNIP3 Silent p.P76P 0.16 TCGA-56-6546-01 2 96781416 96781416 G A ADRA2B Missense_Mutation p.P158L 0.15 tolerated(0.26) benign(0.03) TCGA-56-6546-01 2 97808503 97808503 A G ANKRD36 Missense_Mutation p.T278A 0.20 tolerated(0.08) benign(0.217) TCGA-56-6546-01 2 97845636 97845636 C T ANKRD36 Silent p.A567A 0.16 TCGA-56-6546-01 2 98177127 98177127 C T ANKRD36B Splice_Site 0.11 TCGA-56-6546-01 2 99180045 99180045 C A INPP4A Missense_Mutation p.T663N 0.17 deleterious(0.01) probably_damaging(0.956) TCGA-56-6546-01 3 111844071 111844071 A T GCSAM Splice_Site p.X75_splice 0.20 TCGA-56-6546-01 3 113378936 113378936 T C KIAA2018 Silent p.Q531Q 0.20 TCGA-56-6546-01 3 113721326 113721326 T A KIAA1407 Nonsense_Mutation p.K680* 0.13 TCGA-56-6546-01 3 121414584 121414584 C T GOLGB1 Missense_Mutation p.E1596K 0.19 probably_damaging(0.92) TCGA-56-6546-01 3 127396373 127396373 C T ABTB1 Silent p.F276F 0.22 TCGA-56-6546-01 3 130202885 130202885 A T COL6A5 3'UTR 0.26 TCGA-56-6546-01 3 130452596 130452596 C T PIK3R4 Missense_Mutation p.D416N 0.16 deleterious(0) probably_damaging(0.972) TCGA-56-6546-01 3 13381467 13381467 C A NUP210 Missense_Mutation p.A1120S 0.37 deleterious(0.04) probably_damaging(0.966) TCGA-56-6546-01 3 143412060 143412060 C A SLC9A9 Missense_Mutation p.G208V 0.17 deleterious(0) probably_damaging(1) TCGA-56-6546-01 3 143412061 143412061 C A SLC9A9 Missense_Mutation p.G208C 0.17 deleterious(0) probably_damaging(1) TCGA-56-6546-01 3 156009633 156009633 C A KCNAB1 Intron 0.18 TCGA-56-6546-01 3 165547364 165547364 T - BCHE Frame_Shift_Del p.A487Pfs*5 0.16 TCGA-56-6546-01 3 182841756 182841756 G A LAMP3 3'UTR 0.12 TCGA-56-6546-01 3 184001719 184001719 C A ECE2 Missense_Mutation p.D439E 0.10 deleterious(0.01) benign(0.256) TCGA-56-6546-01 3 47371567 47371567 C T KLHL18 Silent p.F176F 0.26 TCGA-56-6546-01 4 115749016 115749016 G T NDST4 Missense_Mutation p.P859T 0.21 tolerated(0.27) probably_damaging(0.981) TCGA-56-6546-01 4 115997560 115997560 C G NDST4 Missense_Mutation p.E211D 0.09 tolerated(0.25) benign(0.006) TCGA-56-6546-01 4 126239746 126239746 G A FAT4 Missense_Mutation p.S727N 0.18 possibly_damaging(0.491) TCGA-56-6546-01 4 158057978 158057978 C A GLRB Missense_Mutation p.P184T 0.23 deleterious(0) probably_damaging(0.984) TCGA-56-6546-01 4 164393795 164393795 T C TKTL2 Missense_Mutation p.I364M 0.18 deleterious(0) probably_damaging(0.983) TCGA-56-6546-01 4 165962132 165962132 C A TRIM60 Missense_Mutation p.T303K 0.10 deleterious(0) probably_damaging(0.996) TCGA-56-6546-01 4 177032734 177032734 G A WDR17 Missense_Mutation p.M25I 0.09 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-56-6546-01 4 37962456 37962456 G A PTTG2 Missense_Mutation p.R134H 0.15 tolerated(1) benign(0.001) TCGA-56-6546-01 4 3949602 3949602 G T FAM86EP RNA 0.19 TCGA-56-6546-01 4 47602230 47602230 C G CORIN Splice_Site p.X982_splice 0.11 TCGA-56-6546-01 4 57204949 57204949 C G AASDH Missense_Mutation p.Q972H 0.18 tolerated(0.06) benign(0.053) TCGA-56-6546-01 4 71510196 71510196 A T ENAM Missense_Mutation p.Q1018L 0.16 deleterious(0) probably_damaging(0.988) TCGA-56-6546-01 4 76793293 76793293 A T PPEF2 Missense_Mutation p.Y512N 0.29 deleterious(0) probably_damaging(0.999) TCGA-56-6546-01 4 83857199 83857199 G A LIN54 Missense_Mutation p.R594C 0.19 deleterious(0) possibly_damaging(0.843) TCGA-56-6546-01 4 853458 853458 G A GAK Silent p.S1073S 0.15 TCGA-56-6546-01 4 96140439 96140439 G T UNC5C Silent p.L442L 0.21 TCGA-56-6546-01 5 100238692 100238692 G C ST8SIA4 5'UTR 0.14 TCGA-56-6546-01 5 131530683 131530683 C G P4HA2 Silent p.R491R 0.24 TCGA-56-6546-01 5 140502062 140502062 T A PCDHB4 Missense_Mutation p.V161E 0.35 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-56-6546-01 5 140588483 140588483 G T PCDHB12 Nonsense_Mutation p.E2* 0.23 TCGA-56-6546-01 5 140752099 140752099 T C PCDHGB3 Missense_Mutation p.L713P 0.20 deleterious(0) probably_damaging(0.99) TCGA-56-6546-01 5 140802039 140802039 G T PCDHGA11 Missense_Mutation p.L415F 0.30 deleterious_low_confidence(0.04) benign(0.04) TCGA-56-6546-01 5 148679152 148679154 AAG - AFAP1L1 In_Frame_Del p.K34del 0.35 TCGA-56-6546-01 5 155771565 155771565 A C SGCD Missense_Mutation p.K24Q 0.25 tolerated(0.14) probably_damaging(0.983) TCGA-56-6546-01 5 16090997 16090997 C A MARCH11 Splice_Site p.X296_splice 0.23 TCGA-56-6546-01 5 177036618 177036618 G T B4GALT7 Silent p.V302V 0.26 TCGA-56-6546-01 5 32786432 32786433 CC - NPR3 Frame_Shift_Del p.H537Ffs*40 0.19 TCGA-56-6546-01 5 35047982 35047982 T A AGXT2 Nonsense_Mutation p.R6* 0.17 TCGA-56-6546-01 5 39202365 39202365 G T FYB Missense_Mutation p.S243Y 0.17 deleterious(0.01) benign(0.235) TCGA-56-6546-01 5 40950040 40950040 C G C7 Silent p.S339S 0.26 TCGA-56-6546-01 5 41032884 41032884 G T MROH2B Missense_Mutation p.P801T 0.26 deleterious(0) possibly_damaging(0.743) TCGA-56-6546-01 5 45262787 45262787 C A HCN1 Missense_Mutation p.A637S 0.06 tolerated(0.77) benign(0.049) TCGA-56-6546-01 5 5464670 5464670 G T KIAA0947 Silent p.V1741V 0.16 TCGA-56-6546-01 5 68692239 68692239 A T RAD17 Missense_Mutation p.R491W 0.15 deleterious(0.04) possibly_damaging(0.778) TCGA-56-6546-01 5 74063106 74063106 C T GFM2 5'UTR 0.22 TCGA-56-6546-01 6 105609717 105609717 T C POPDC3 Missense_Mutation p.Q23R 0.26 tolerated(0.19) benign(0) TCGA-56-6546-01 6 106634342 106634342 T A ATG5 3'UTR 0.23 TCGA-56-6546-01 6 106968998 106968998 C G AIM1 Silent p.P897P 0.20 TCGA-56-6546-01 6 114383955 114383955 G T HS3ST5 Missense_Mutation p.L19I 0.25 tolerated_low_confidence(0.18) benign(0.003) TCGA-56-6546-01 6 12933987 12933987 A G PHACTR1 Missense_Mutation p.T125A 0.17 unknown(0) TCGA-56-6546-01 6 138657493 138657493 T G KIAA1244 Missense_Mutation p.F2135C 0.20 deleterious(0) probably_damaging(0.998) TCGA-56-6546-01 6 146350495 146350495 C T GRM1 5'UTR 0.45 TCGA-56-6546-01 6 151672155 151672155 G A AKAP12 Missense_Mutation p.A877T 0.14 tolerated(0.12) possibly_damaging(0.498) TCGA-56-6546-01 6 158495649 158495649 G T SYNJ2 Missense_Mutation p.C724F 0.15 tolerated(0.07) benign(0.32) TCGA-56-6546-01 6 161027644 161027644 G C LPA Missense_Mutation p.P884A 0.16 deleterious(0) probably_damaging(0.977) TCGA-56-6546-01 6 169650859 169650859 C T THBS2 Silent p.L7L 0.14 TCGA-56-6546-01 6 26285456 26285459 AGCG - HIST1H4H Frame_Shift_Del p.A90Gfs*56 0.17 TCGA-56-6546-01 6 27858534 27858534 C A HIST1H3J Missense_Mutation p.G13C 0.18 deleterious_low_confidence(0) benign(0.099) TCGA-56-6546-01 6 30638192 30638192 C A DHX16 Missense_Mutation p.A221S 0.19 tolerated(0.43) unknown(0) TCGA-56-6546-01 6 30638193 30638193 C A DHX16 Missense_Mutation p.K220N 0.19 tolerated(0.16) unknown(0) TCGA-56-6546-01 6 32037618 32037618 C T TNXB Missense_Mutation p.D1767N 0.12 possibly_damaging(0.485) TCGA-56-6546-01 6 36294340 36294340 C G C6orf222 Missense_Mutation p.S328T 0.04 tolerated(0.22) possibly_damaging(0.682) TCGA-56-6546-01 6 45514572 45514572 G T RUNX2 Nonsense_Mutation p.E366* 0.19 TCGA-56-6546-01 6 62604622 62604622 G A KHDRBS2 Missense_Mutation p.P243L 0.21 tolerated(0.3) benign(0.276) TCGA-56-6546-01 6 71603972 71603972 G C B3GAT2 Missense_Mutation p.R199G 0.15 deleterious(0) probably_damaging(0.995) TCGA-56-6546-01 6 7229882 7229882 C T RREB1 Missense_Mutation p.T517M 0.22 deleterious(0) probably_damaging(0.969) TCGA-56-6546-01 6 7583007 7583007 C T DSP Missense_Mutation p.R1838C 0.18 possibly_damaging(0.77) TCGA-56-6546-01 6 7585736 7585736 C A DSP Silent p.T2747T 0.15 TCGA-56-6546-01 6 7609057 7609057 G T SNRNP48 Splice_Site p.X324_splice 0.17 TCGA-56-6546-01 6 90460227 90460227 T A MDN1 Silent p.G1084G 0.16 TCGA-56-6546-01 6 90604280 90604280 C T GJA10 Silent p.I31I 0.21 TCGA-56-6546-01 6 97001374 97001374 G T UFL1 Nonsense_Mutation p.E794* 0.17 TCGA-56-6546-01 6 99283761 99283761 T A POU3F2 Missense_Mutation p.S338T 0.15 tolerated(0.5) benign(0.01) TCGA-56-6546-01 6 99322094 99322094 C A FBXL4 3'UTR 0.11 TCGA-56-6546-01 6 99322095 99322095 C A FBXL4 3'UTR 0.11 TCGA-56-6546-01 7 100549930 100549930 A T MUC3A Missense_Mutation p.T171S 0.14 tolerated(0.11) unknown(0) TCGA-56-6546-01 7 100551511 100551511 A T MUC3A Missense_Mutation p.T88S 0.05 tolerated(0.07) benign(0.182) TCGA-56-6546-01 7 102940667 102940667 G A PMPCB Missense_Mutation p.E124K 0.08 deleterious(0) probably_damaging(1) TCGA-56-6546-01 7 127231325 127231325 G T ARF5 Missense_Mutation p.W172L 0.16 deleterious_low_confidence(0) possibly_damaging(0.458) TCGA-56-6546-01 7 129666074 129666074 T A ZC3HC1 Missense_Mutation p.T234S 0.15 tolerated(0.82) benign(0.027) TCGA-56-6546-01 7 137792252 137792252 C T AKR1D1 Missense_Mutation p.R261C 0.19 deleterious(0.05) probably_damaging(1) TCGA-56-6546-01 7 146829568 146829568 C A CNTNAP2 Missense_Mutation p.Q439K 0.16 tolerated(0.73) benign(0.008) TCGA-56-6546-01 7 148312518 148312518 C A C7orf33 3'UTR 0.15 TCGA-56-6546-01 7 149462587 149462587 G T ZNF467 Missense_Mutation p.S335Y 0.33 tolerated(0.11) benign(0.232) TCGA-56-6546-01 7 149486292 149486292 G T SSPO RNA 0.16 TCGA-56-6546-01 7 149488961 149488961 G A SSPO RNA 0.18 TCGA-56-6546-01 7 151704947 151704947 G C GALNTL5 Missense_Mutation p.R315P 0.16 deleterious(0.01) benign(0.414) TCGA-56-6546-01 7 154172066 154172066 A G DPP6 Missense_Mutation p.E134G 0.20 deleterious(0.04) benign(0.042) TCGA-56-6546-01 7 158464239 158464239 C A NCAPG2 Missense_Mutation p.M482I 0.19 deleterious(0.01) benign(0.059) TCGA-56-6546-01 7 20698790 20698790 C G ABCB5 Intron 0.27 TCGA-56-6546-01 7 30695196 30695196 C G CRHR2 Missense_Mutation p.Q378H 0.18 deleterious(0) probably_damaging(0.999) TCGA-56-6546-01 7 34971194 34971194 T A DPY19L1 Silent p.V673V 0.14 TCGA-56-6546-01 7 5780740 5780740 T A RNF216 Missense_Mutation p.Q303L 0.31 tolerated(0.1) benign(0.156) TCGA-56-6546-01 7 6805341 6805341 C - RSPH10B2 Frame_Shift_Del p.I194Ffs*25 0.17 TCGA-56-6546-01 7 7612493 7612493 A T MIOS Silent p.L129L 0.25 TCGA-56-6546-01 7 86416019 86416020 GC - GRM3 Frame_Shift_Del p.Q306Gfs*114 0.14 TCGA-56-6546-01 7 89915616 89915616 G T C7orf63 Missense_Mutation p.S520I 0.16 tolerated(0.11) benign(0.01) TCGA-56-6546-01 7 95614265 95614265 G T DYNC1I1 Missense_Mutation p.G257V 0.17 deleterious(0) probably_damaging(1) TCGA-56-6546-01 7 97823030 97823030 A C LMTK2 Missense_Mutation p.T1085P 0.28 tolerated(0.25) benign(0.003) TCGA-56-6546-01 8 101149792 101149792 C A FBXO43 Splice_Site p.X558_splice 0.14 TCGA-56-6546-01 8 105509436 105509436 G A LRP12 Silent p.C448C 0.19 TCGA-56-6546-01 8 110463361 110463361 C T PKHD1L1 Silent p.V2111V 0.28 TCGA-56-6546-01 8 113649184 113649184 G T CSMD3 Silent p.R1193R 0.19 TCGA-56-6546-01 8 125072499 125072499 A G FER1L6 Missense_Mutation p.I985V 0.33 tolerated(0.14) benign(0.102) TCGA-56-6546-01 8 127569404 127569404 C G FAM84B Silent p.R77R 0.11 TCGA-56-6546-01 8 134478271 134478271 C A ST3GAL1 Silent p.V123V 0.23 TCGA-56-6546-01 8 142476592 142476592 G A MROH5 3'UTR 0.27 TCGA-56-6546-01 8 143927970 143927970 G T GML Missense_Mutation p.G114V 0.20 deleterious(0) probably_damaging(1) TCGA-56-6546-01 8 2040265 2040265 C A MYOM2 Missense_Mutation p.D640E 0.07 tolerated(1) benign(0.019) TCGA-56-6546-01 8 28998134 28998134 C A KIF13B Missense_Mutation p.V779L 0.31 tolerated(0.33) benign(0.007) TCGA-56-6546-01 8 28998135 28998135 C A KIF13B Splice_Site p.X779_splice 0.31 TCGA-56-6546-01 8 37697084 37697084 T C GPR124 Missense_Mutation p.S819P 0.14 tolerated(0.16) probably_damaging(0.949) TCGA-56-6546-01 8 77690543 77690543 C A ZFHX4 Missense_Mutation p.H1065N 0.18 benign(0.216) TCGA-56-6546-01 8 86044135 86044135 A G LRRCC1 Missense_Mutation p.Y636C 0.17 deleterious(0) probably_damaging(0.999) TCGA-56-6546-01 8 89128749 89128749 A G MMP16 Missense_Mutation p.M357T 0.19 deleterious(0) possibly_damaging(0.873) TCGA-56-6546-01 8 92378879 92378879 T A SLC26A7 Nonsense_Mutation p.Y520* 0.22 TCGA-56-6546-01 9 100692661 100692661 G T HEMGN Missense_Mutation p.S339Y 0.26 tolerated(0.08) benign(0.325) TCGA-56-6546-01 9 101125063 101125063 C G GABBR2 Silent p.L609L 0.23 TCGA-56-6546-01 9 120470891 120470891 C A TLR4 Silent p.I48I 0.26 TCGA-56-6546-01 9 130866023 130866023 G T SLC25A25 Missense_Mutation p.G218W 0.22 deleterious(0) probably_damaging(0.953) TCGA-56-6546-01 9 139642928 139642928 C T LCN6 Missense_Mutation p.G3D 0.38 tolerated(0.07) benign(0.146) TCGA-56-6546-01 9 139693672 139693672 G C CCDC183 Missense_Mutation p.K63N 0.40 tolerated(0.07) benign(0.048) TCGA-56-6546-01 9 18906818 18906818 C T ADAMTSL1 Missense_Mutation p.A1697V 0.23 tolerated(0.37) benign(0) TCGA-56-6546-01 9 2029188 2029188 C T SMARCA2 Missense_Mutation p.P56S 0.11 unknown(0) TCGA-56-6546-01 9 74838034 74838034 A T GDA Splice_Site p.X203_splice 0.28 TCGA-56-6546-01 9 82340080 82340080 T C TLE4 3'UTR 0.32 TCGA-56-6546-01 9 8319963 8319963 C T PTPRD Silent p.A1846A 0.28 TCGA-56-6546-01 9 84532387 84532387 C A SPATA31D5P RNA 0.30 TCGA-56-6546-01 9 90344506 90344506 A T CTSL Missense_Mutation p.N214Y 0.34 deleterious(0.01) possibly_damaging(0.626) TCGA-56-6546-01 X 107683297 107683297 G C COL4A5 5'UTR 0.29 TCGA-56-6546-01 X 140926178 140926178 G A MAGEC3 Missense_Mutation p.C26Y 0.44 deleterious_low_confidence(0) benign(0.384) TCGA-56-6546-01 X 144904178 144904178 C A SLITRK2 Missense_Mutation p.P79T 0.26 tolerated(0.95) benign(0.013) TCGA-56-6546-01 X 18797254 18797254 T A PPEF1 Missense_Mutation p.L229M 0.47 deleterious(0) probably_damaging(0.998) TCGA-56-6546-01 X 20195156 20195156 G A RPS6KA3 Missense_Mutation p.L298F 0.40 tolerated(0.15) probably_damaging(0.979) TCGA-56-6546-01 X 48762630 48762630 G C SLC35A2 Missense_Mutation p.Q186E 0.60 tolerated(0.27) benign(0.055) TCGA-56-6546-01 X 54783662 54783662 C A ITIH6 Missense_Mutation p.G949C 0.33 deleterious(0.02) possibly_damaging(0.525) TCGA-56-6546-01 X 70823780 70823780 A G ACRC Missense_Mutation p.K218R 0.15 unknown(0) TCGA-56-6546-01 X 70823781 70823781 G C ACRC Missense_Mutation p.K218N 0.19 unknown(0) TCGA-56-6546-01 X 78216168 78216168 G T P2RY10 Missense_Mutation p.A51S 0.34 tolerated(0.13) benign(0.304) TCGA-56-6546-01 X 85631865 85631865 G A DACH2 Missense_Mutation p.S176N 0.56 tolerated(0.08) possibly_damaging(0.587) TCGA-56-7221-01 10 107006980 107006980 A G SORCS3 Missense_Mutation p.Y999C 0.41 tolerated(0.1) possibly_damaging(0.848) TCGA-56-7221-01 10 124395559 124395559 C G DMBT1 Missense_Mutation p.R2072G 0.40 tolerated(0.14) benign(0.293) TCGA-56-7221-01 10 124459311 124459311 C T C10orf120 5'UTR 0.40 TCGA-56-7221-01 10 129676403 129676403 G A CLRN3 3'UTR 0.37 TCGA-56-7221-01 10 13175517 13175517 G A OPTN Silent p.E516E 0.23 TCGA-56-7221-01 10 15573056 15573056 C T ITGA8 Missense_Mutation p.S992N 0.36 tolerated(0.08) benign(0.002) TCGA-56-7221-01 10 18795465 18795465 C T CACNB2 Missense_Mutation p.P220L 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-56-7221-01 10 25887272 25887272 T A GPR158 Missense_Mutation p.I906K 0.32 deleterious(0) possibly_damaging(0.713) TCGA-56-7221-01 10 35896807 35896807 A G GJD4 Silent p.R122R 0.28 TCGA-56-7221-01 10 43613912 43613912 G A RET Silent p.G792G 0.17 TCGA-56-7221-01 10 55955575 55955575 T A PCDH15 Missense_Mutation p.Q391H 0.36 tolerated(0.1) benign(0.436) TCGA-56-7221-01 10 71690247 71690247 G T COL13A1 Missense_Mutation p.G530V 0.33 deleterious(0) probably_damaging(1) TCGA-56-7221-01 10 88950281 88950281 C T FAM35A Silent p.D783D 0.42 TCGA-56-7221-01 10 97791624 97791624 T A CC2D2B Silent p.I355I 0.42 TCGA-56-7221-01 11 102323411 102323411 G A TMEM123 5'UTR 0.36 TCGA-56-7221-01 11 118223143 118223143 C G CD3G Missense_Mutation p.Q170E 0.44 deleterious(0) possibly_damaging(0.676) TCGA-56-7221-01 11 118921828 118921828 G A HYOU1 Silent p.F528F 0.36 TCGA-56-7221-01 11 118922233 118922233 G C HYOU1 Silent p.V481V 0.22 TCGA-56-7221-01 11 124757364 124757364 C A ROBO4 Silent p.R696R 0.58 TCGA-56-7221-01 11 126138743 126138743 G C SRPR 5'UTR 0.50 TCGA-56-7221-01 11 1605618 1605618 G A KRTAP5-1 3'UTR 0.24 TCGA-56-7221-01 11 17793351 17793351 G A KCNC1 Missense_Mutation p.R237Q 0.23 tolerated(0.33) benign(0.004) TCGA-56-7221-01 11 20907075 20907075 G C NELL1 Missense_Mutation p.G198R 0.21 deleterious(0.01) benign(0.41) TCGA-56-7221-01 11 209211 209211 G C RIC8A Intron 0.27 TCGA-56-7221-01 11 26581410 26581410 C A MUC15 3'UTR 0.32 TCGA-56-7221-01 11 30033506 30033506 G A KCNA4 Silent p.R240R 0.24 TCGA-56-7221-01 11 40136810 40136810 C T LRRC4C Missense_Mutation p.D345N 0.17 deleterious(0.02) possibly_damaging(0.817) TCGA-56-7221-01 11 44639743 44639743 A T CD82 Missense_Mutation p.N157I 0.33 deleterious(0) probably_damaging(0.992) TCGA-56-7221-01 11 46880434 46880434 G A LRP4 3'UTR 0.26 TCGA-56-7221-01 11 50003301 50003301 A G OR4C12 Missense_Mutation p.V246A 0.14 tolerated_low_confidence(0.05) possibly_damaging(0.676) TCGA-56-7221-01 11 51412029 51412029 C A OR4A5 Missense_Mutation p.A123S 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-56-7221-01 11 5529093 5529093 G A UBQLN3 Missense_Mutation p.L566F 0.26 tolerated(0.71) benign(0.002) TCGA-56-7221-01 11 55322646 55322646 A T OR4C15 Missense_Mutation p.K288N 0.20 deleterious_low_confidence(0) probably_damaging(0.936) TCGA-56-7221-01 11 55418704 55418704 G A OR4S2 Missense_Mutation p.E109K 0.32 deleterious(0.02) benign(0.04) TCGA-56-7221-01 11 55761361 55761361 G T OR5F1 Silent p.A247A 0.28 TCGA-56-7221-01 11 56113541 56113541 C T OR8K1 Silent p.H9H 0.35 TCGA-56-7221-01 11 56468143 56468143 G T OR9G1 Missense_Mutation p.A94S 0.15 tolerated(0.3) benign(0.053) TCGA-56-7221-01 11 57947355 57947355 G T OR9Q1 Missense_Mutation p.G147W 0.32 deleterious(0) probably_damaging(0.999) TCGA-56-7221-01 11 57958295 57958295 C A OR9Q2 Missense_Mutation p.D111E 0.25 tolerated(1) benign(0.077) TCGA-56-7221-01 11 59210767 59210767 G C OR5A1 Silent p.L42L 0.26 TCGA-56-7221-01 11 59224887 59224887 G - OR4D6 Frame_Shift_Del p.G152Vfs*9 0.27 TCGA-56-7221-01 11 60198277 60198277 G C MS4A5 Missense_Mutation p.Q54H 0.14 deleterious(0) probably_damaging(0.999) TCGA-56-7221-01 11 66033668 66033668 C G KLC2 Silent p.P569P 0.34 TCGA-56-7221-01 11 73850662 73850662 G - C2CD3 Frame_Shift_Del p.S232* 0.34 TCGA-56-7221-01 11 82868648 82868648 C G PCF11 Missense_Mutation p.S56C 0.20 deleterious(0.01) benign(0.156) TCGA-56-7221-01 11 89155083 89155083 A T NOX4 Missense_Mutation p.L206M 0.51 tolerated(0.16) benign(0.081) TCGA-56-7221-01 11 99690434 99690434 C A CNTN5 Missense_Mutation p.A72E 0.34 tolerated_low_confidence(0.38) benign(0.025) TCGA-56-7221-01 12 102056215 102056215 T C MYBPC1 Silent p.F679F 0.27 TCGA-56-7221-01 12 114397898 114397898 G T RBM19 Missense_Mutation p.P102H 0.26 deleterious(0.02) possibly_damaging(0.627) TCGA-56-7221-01 12 116404041 116404041 C A MED13L Missense_Mutation p.G2078V 0.25 deleterious(0.03) possibly_damaging(0.736) TCGA-56-7221-01 12 133198164 133198164 G A P2RX2 Missense_Mutation p.G367E 0.37 tolerated_low_confidence(0.36) probably_damaging(0.988) TCGA-56-7221-01 12 133435794 133435794 G A CHFR Silent p.N269N 0.21 TCGA-56-7221-01 12 21294548 21294548 C A SLCO1B1 Missense_Mutation p.Q14K 0.23 tolerated(0.5) benign(0.003) TCGA-56-7221-01 12 29617592 29617592 G T OVCH1 Missense_Mutation p.T658K 0.22 tolerated(0.31) benign(0.069) TCGA-56-7221-01 12 30837245 30837245 C A IPO8 Missense_Mutation p.D105Y 0.26 deleterious(0) possibly_damaging(0.62) TCGA-56-7221-01 12 40677852 40677852 G T LRRK2 Missense_Mutation p.G806V 0.25 deleterious(0) probably_damaging(1) TCGA-56-7221-01 12 43945707 43945707 C A ADAMTS20 Missense_Mutation p.W6C 0.26 deleterious(0.02) probably_damaging(0.982) TCGA-56-7221-01 12 48375929 48375929 C T COL2A1 Silent p.E772E 0.31 TCGA-56-7221-01 12 49434181 49434181 G A KMT2D Nonsense_Mutation p.Q2458* 0.33 TCGA-56-7221-01 12 53096704 53096704 T A KRT77 Missense_Mutation p.N172I 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-56-7221-01 12 56091241 56091241 G A ITGA7 Missense_Mutation p.S504L 0.25 tolerated(0.29) benign(0.005) TCGA-56-7221-01 12 56489527 56489527 C G ERBB3 Silent p.L664L 0.29 TCGA-56-7221-01 12 56737879 56737879 C T STAT2 Missense_Mutation p.E715K 0.50 tolerated(0.31) benign(0.002) TCGA-56-7221-01 12 56867279 56867279 C A GLS2 Missense_Mutation p.G442W 0.38 deleterious(0) probably_damaging(1) TCGA-56-7221-01 12 69743898 69743898 G T LYZ Missense_Mutation p.L49F 0.36 deleterious(0) probably_damaging(0.986) TCGA-56-7221-01 12 70070983 70070983 C A BEST3 Missense_Mutation p.G231W 0.48 deleterious(0) probably_damaging(0.993) TCGA-56-7221-01 13 108518352 108518352 C T FAM155A Missense_Mutation p.G198E 0.24 deleterious(0) probably_damaging(1) TCGA-56-7221-01 13 114507889 114507889 C A TMEM255B Missense_Mutation p.A234D 0.30 tolerated(0.07) benign(0.139) TCGA-56-7221-01 13 25374522 25374522 G A RNF17 Silent p.V536V 0.27 TCGA-56-7221-01 13 50502145 50502145 C A SPRYD7 Silent p.L100L 0.27 TCGA-56-7221-01 13 60565330 60565330 A C DIAPH3 Silent p.L441L 0.30 TCGA-56-7221-01 13 70456510 70456510 C G KLHL1 Missense_Mutation p.A378P 0.28 deleterious(0) probably_damaging(0.995) TCGA-56-7221-01 13 92101111 92101111 A G GPC5 Missense_Mutation p.Q87R 0.29 deleterious(0.03) benign(0.033) TCGA-56-7221-01 13 98662264 98662264 G C IPO5 Missense_Mutation p.D662H 0.46 deleterious(0) possibly_damaging(0.519) TCGA-56-7221-01 14 102467343 102467343 G T DYNC1H1 Missense_Mutation p.R1376L 0.30 probably_damaging(0.993) TCGA-56-7221-01 14 106306742 106306742 G T IGHD Silent p.R363R 0.32 TCGA-56-7221-01 14 19377902 19377903 - A OR11H12 Frame_Shift_Ins p.N106Kfs*31 0.09 TCGA-56-7221-01 14 19378498 19378498 C A OR11H12 Missense_Mutation p.P302H 0.37 deleterious(0) probably_damaging(0.996) TCGA-56-7221-01 14 20344542 20344542 T C OR4K2 Missense_Mutation p.M39T 0.23 deleterious(0.02) benign(0.003) TCGA-56-7221-01 14 23567189 23567189 G A C14orf119 Missense_Mutation p.E108K 0.29 deleterious(0.01) possibly_damaging(0.57) TCGA-56-7221-01 14 55625304 55625304 T G DLGAP5 Missense_Mutation p.E603D 0.19 tolerated(0.1) benign(0.33) TCGA-56-7221-01 14 60074185 60074185 G A RTN1 Silent p.D597D 0.27 TCGA-56-7221-01 14 68268968 68268968 C A ZFYVE26 Silent p.L489L 0.25 TCGA-56-7221-01 14 69704555 69704555 G C EXD2 Missense_Mutation p.R519P 0.13 deleterious(0) probably_damaging(0.999) TCGA-56-7221-01 14 70125408 70125408 G T KIAA0247 Silent p.L33L 0.29 TCGA-56-7221-01 14 73437652 73437652 G A ZFYVE1 Missense_Mutation p.R758C 0.18 deleterious(0) probably_damaging(1) TCGA-56-7221-01 14 74769625 74769625 C T ABCD4 5'UTR 0.43 TCGA-56-7221-01 14 99929885 99929885 T C SETD3 Missense_Mutation p.K45R 0.24 deleterious(0.04) benign(0.2) TCGA-56-7221-01 15 25226930 25226930 G T SNRPN 3'Flank 0.62 TCGA-56-7221-01 15 25429534 25429534 C A SNORD115-8 RNA 0.27 TCGA-56-7221-01 15 25474151 25474151 G A SNORD115-32 RNA 0.27 TCGA-56-7221-01 15 30029551 30029551 C G TJP1 Missense_Mutation p.D442H 0.29 deleterious(0) probably_damaging(1) TCGA-56-7221-01 15 40093807 40093807 G A GPR176 Silent p.S358S 0.28 TCGA-56-7221-01 15 41387966 41387966 G C INO80 Missense_Mutation p.L102V 0.39 tolerated(0.31) benign(0.015) TCGA-56-7221-01 15 43025301 43025301 C G CDAN1 Missense_Mutation p.R484T 0.31 deleterious(0) benign(0.172) TCGA-56-7221-01 15 56388630 56388630 G C RFX7 Missense_Mutation p.I432M 0.38 deleterious(0) probably_damaging(0.999) TCGA-56-7221-01 15 58471376 58471376 C G AQP9 Missense_Mutation p.S182C 0.33 deleterious(0.03) possibly_damaging(0.852) TCGA-56-7221-01 15 62327168 62327168 C A VPS13C Missense_Mutation p.V91F 0.23 deleterious(0) probably_damaging(0.998) TCGA-56-7221-01 15 63125709 63125709 G A TLN2 Missense_Mutation p.D2337N 0.25 tolerated(0.1) benign(0.099) TCGA-56-7221-01 15 89876500 89876500 C A POLG Silent p.L162L 0.24 TCGA-56-7221-01 15 96877503 96877503 A T NR2F2 Missense_Mutation p.E214V 0.27 deleterious(0) probably_damaging(1) TCGA-56-7221-01 16 103535 103535 G A POLR3K Nonsense_Mutation p.Q18* 0.22 TCGA-56-7221-01 16 15661905 15661905 C - C16orf45 Frame_Shift_Del p.I100Sfs*17 0.27 TCGA-56-7221-01 16 23409429 23409429 C G COG7 Missense_Mutation p.G609R 0.32 deleterious(0) probably_damaging(0.968) TCGA-56-7221-01 16 27549605 27549605 A G GTF3C1 Silent p.D168D 0.39 TCGA-56-7221-01 16 50245341 50245341 T C PAPD5 Missense_Mutation p.L234P 0.22 deleterious(0) probably_damaging(0.992) TCGA-56-7221-01 16 728037 728037 C T RHBDL1 Silent p.I434I 0.26 TCGA-56-7221-01 16 84102059 84102059 C A MBTPS1 Missense_Mutation p.W652C 0.46 deleterious(0) probably_damaging(0.999) TCGA-56-7221-01 16 863475 863475 C G PRR25 Missense_Mutation p.R275G 0.24 deleterious_low_confidence(0) benign(0.433) TCGA-56-7221-01 16 9857919 9857919 C G GRIN2A Missense_Mutation p.G1161A 0.24 tolerated(0.8) benign(0.004) TCGA-56-7221-01 17 10402102 10402102 C A MYH1 Missense_Mutation p.R1341L 0.24 deleterious(0.01) benign(0.021) TCGA-56-7221-01 17 12656096 12656096 C G MYOCD Silent p.L497L 0.27 TCGA-56-7221-01 17 15450449 15450449 C A TVP23C Missense_Mutation p.R85I 0.21 deleterious(0) probably_damaging(1) TCGA-56-7221-01 17 28320340 28320340 G T EFCAB5 Splice_Site p.X308_splice 0.20 TCGA-56-7221-01 17 32963081 32963081 A C TMEM132E Missense_Mutation p.E588A 0.23 deleterious(0) benign(0.441) TCGA-56-7221-01 17 33849478 33849478 T A SLFN12L 5'UTR 0.19 TCGA-56-7221-01 17 3628885 3628885 C T GSG2 Silent p.R552R 0.22 TCGA-56-7221-01 17 38813602 38813602 A T KRT222 Splice_Site p.X220_splice 0.20 TCGA-56-7221-01 17 40695098 40695098 G T NAGLU Silent p.P358P 0.23 TCGA-56-7221-01 17 42327798 42327798 G T SLC4A1 3'UTR 0.27 TCGA-56-7221-01 17 42452106 42452106 A G ITGA2B Missense_Mutation p.L955P 0.47 deleterious(0) probably_damaging(0.993) TCGA-56-7221-01 17 44414856 44414856 C A LRRC37A Missense_Mutation p.A1659D 0.20 tolerated(0.1) probably_damaging(0.994) TCGA-56-7221-01 17 6589648 6589648 C T SLC13A5 Missense_Mutation p.G529R 0.32 deleterious(0) probably_damaging(1) TCGA-56-7221-01 17 7577506 7577506 C A TP53 Missense_Mutation p.D259Y 0.38 deleterious(0.02) probably_damaging(0.996) TCGA-56-7221-01 17 7578382 7578382 G C TP53 Nonsense_Mutation p.S183* 0.32 TCGA-56-7221-01 17 78264516 78264516 G T RNF213 Silent p.L420L 0.23 TCGA-56-7221-01 17 80579555 80579555 G T WDR45B Missense_Mutation p.A183E 0.25 deleterious(0) probably_damaging(1) TCGA-56-7221-01 17 9745819 9745819 A T GLP2R Silent p.S130S 0.26 TCGA-56-7221-01 17 9792861 9792861 C A GLP2R Silent p.R501R 0.17 TCGA-56-7221-01 17 9792862 9792862 G A GLP2R Missense_Mutation p.R501Q 0.16 tolerated(1) benign(0.001) TCGA-56-7221-01 18 54603058 54603058 G A WDR7 Silent p.S1251S 0.28 TCGA-56-7221-01 18 70209299 70209299 C A CBLN2 Missense_Mutation p.G33W 0.29 deleterious_low_confidence(0.01) benign(0.252) TCGA-56-7221-01 18 70209300 70209300 C T CBLN2 Silent p.L32L 0.29 TCGA-56-7221-01 19 18961608 18961608 C T UPF1 Silent p.S247S 0.22 TCGA-56-7221-01 19 19257408 19257408 C T MEF2B Missense_Mutation p.G242E 0.27 deleterious(0) possibly_damaging(0.892) TCGA-56-7221-01 19 21607735 21607735 A T ZNF493 Missense_Mutation p.R758S 0.12 tolerated(0.45) benign(0.098) TCGA-56-7221-01 19 22256294 22256294 C A ZNF257 Missense_Mutation p.L52M 0.15 deleterious(0.02) benign(0.168) TCGA-56-7221-01 19 22586191 22586191 C A ZNF98 Missense_Mutation p.V52L 0.27 tolerated(1) benign(0) TCGA-56-7221-01 19 22836232 22836232 G T ZNF492 Missense_Mutation p.V11L 0.10 tolerated(1) benign(0) TCGA-56-7221-01 19 36221242 36221242 G A KMT2B Splice_Site p.X1693_splice 0.29 TCGA-56-7221-01 19 39058417 39058417 G T RYR1 Nonsense_Mutation p.E4507* 0.22 TCGA-56-7221-01 19 4047921 4047921 G A ZBTB7A Silent p.D528D 0.50 TCGA-56-7221-01 19 40900780 40900780 A G PRX Missense_Mutation p.F1160S 0.15 deleterious(0) possibly_damaging(0.504) TCGA-56-7221-01 19 42583427 42583427 C - ZNF574 Frame_Shift_Del p.Q224Sfs*144 0.29 TCGA-56-7221-01 19 45858932 45858932 C T ERCC2 Missense_Mutation p.E512K 0.17 tolerated(0.19) benign(0.027) TCGA-56-7221-01 19 49362853 49362853 C A PLEKHA4 Missense_Mutation p.G189W 0.47 deleterious(0) possibly_damaging(0.759) TCGA-56-7221-01 19 49527213 49527213 C A CGB Splice_Site p.X5_splice 0.16 TCGA-56-7221-01 19 49527214 49527214 C A CGB Missense_Mutation p.Q5H 0.15 tolerated(0.09) probably_damaging(0.949) TCGA-56-7221-01 19 49644750 49644750 G T PPFIA3 Missense_Mutation p.K814N 0.10 deleterious(0.03) benign(0.052) TCGA-56-7221-01 19 53342758 53342758 C T ZNF468 3'UTR 0.18 TCGA-56-7221-01 19 53886829 53886829 G A ZNF525 3'UTR 0.14 TCGA-56-7221-01 19 54481469 54481469 C A CACNG8 Missense_Mutation p.A118E 0.23 deleterious(0) probably_damaging(0.973) TCGA-56-7221-01 19 5455457 5455457 C G ZNRF4 5'UTR 0.22 TCGA-56-7221-01 19 54664990 54664990 A C TMC4 Missense_Mutation p.L571R 0.57 deleterious(0) probably_damaging(0.984) TCGA-56-7221-01 19 55715328 55715328 T C PTPRH Silent p.P236P 0.19 TCGA-56-7221-01 19 56171968 56171968 A C U2AF2 Missense_Mutation p.Q106P 0.16 deleterious(0) probably_damaging(0.979) TCGA-56-7221-01 19 58639328 58639328 G A ZNF329 Nonsense_Mutation p.Q515* 0.19 TCGA-56-7221-01 19 6393099 6393099 C G GTF2F1 5'UTR 0.22 TCGA-56-7221-01 1 103573728 103573728 G C COL11A1 Missense_Mutation p.P3A 0.62 possibly_damaging(0.495) TCGA-56-7221-01 1 152127201 152127201 C T RPTN 3'UTR 0.28 TCGA-56-7221-01 1 155292224 155292224 C T RUSC1 Silent p.I220I 0.19 TCGA-56-7221-01 1 157666147 157666147 T C FCRL3 Intron 0.63 TCGA-56-7221-01 1 157771334 157771334 G A FCRL1 Missense_Mutation p.S307L 0.59 tolerated(0.09) benign(0.038) TCGA-56-7221-01 1 161654871 161654871 G A RPL31P11 RNA 0.32 TCGA-56-7221-01 1 179989441 179989441 G C CEP350 Missense_Mutation p.K844N 0.30 possibly_damaging(0.887) TCGA-56-7221-01 1 179989559 179989559 G A CEP350 Missense_Mutation p.D884N 0.22 possibly_damaging(0.694) TCGA-56-7221-01 1 185959466 185959466 T C HMCN1 Missense_Mutation p.S1090P 0.62 possibly_damaging(0.646) TCGA-56-7221-01 1 185959470 185959470 T A HMCN1 Missense_Mutation p.V1091D 0.62 possibly_damaging(0.751) TCGA-56-7221-01 1 18808702 18808702 G T KLHDC7A Silent p.P409P 0.50 TCGA-56-7221-01 1 197112882 197112882 C T ASPM Missense_Mutation p.R167K 0.30 tolerated(1) benign(0) TCGA-56-7221-01 1 19981893 19981893 G T MINOS1-NBL1 Missense_Mutation p.D83Y 0.56 deleterious(0) probably_damaging(0.98) TCGA-56-7221-01 1 204413530 204413530 G A PIK3C2B Missense_Mutation p.R901C 0.45 deleterious(0) probably_damaging(0.998) TCGA-56-7221-01 1 207300151 207300151 G T C4BPA Missense_Mutation p.C267F 0.60 deleterious(0) probably_damaging(1) TCGA-56-7221-01 1 216246244 216246244 A T USH2A Silent p.R1948R 0.50 TCGA-56-7221-01 1 248436697 248436697 C T OR2T33 Silent p.L140L 0.16 TCGA-56-7221-01 1 26524270 26524270 C G CATSPER4 Missense_Mutation p.L185V 0.44 deleterious(0.01) probably_damaging(0.966) TCGA-56-7221-01 1 27699687 27699687 T A FCN3 Silent p.L111L 0.42 TCGA-56-7221-01 1 42045980 42045980 C T HIVEP3 Missense_Mutation p.E1497K 0.22 possibly_damaging(0.546) TCGA-56-7221-01 1 42049428 42049428 C T HIVEP3 Silent p.E347E 0.26 TCGA-56-7221-01 1 42049627 42049627 C T HIVEP3 Missense_Mutation p.S281N 0.17 probably_damaging(0.993) TCGA-56-7221-01 1 43914283 43914283 G A SZT2 Missense_Mutation p.D3267N 0.16 tolerated(0.3) probably_damaging(0.995) TCGA-56-7221-01 1 43917587 43917587 G C SZT2 3'UTR 0.26 TCGA-56-7221-01 1 66834601 66834601 G - PDE4B Frame_Shift_Del p.E599Kfs*47 0.30 TCGA-56-7221-01 1 75055555 75055555 C T C1orf173 Missense_Mutation p.D646N 0.38 deleterious(0.01) probably_damaging(0.933) TCGA-56-7221-01 20 31624270 31624270 G C BPIFB6 Missense_Mutation p.Q199H 0.25 tolerated(0.12) benign(0.016) TCGA-56-7221-01 20 34215253 34215253 G C CPNE1 Missense_Mutation p.I400M 0.35 deleterious(0) probably_damaging(1) TCGA-56-7221-01 20 35443702 35443702 C T SOGA1 Missense_Mutation p.V715M 0.33 tolerated(0.12) benign(0.037) TCGA-56-7221-01 20 57599266 57599266 C T TUBB1 Missense_Mutation p.R262C 0.29 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-56-7221-01 20 60697816 60697816 G C LSM14B Missense_Mutation p.D32H 0.26 deleterious(0) possibly_damaging(0.897) TCGA-56-7221-01 20 60889490 60889490 C T LAMA5 Missense_Mutation p.G2792R 0.22 probably_damaging(0.999) TCGA-56-7221-01 21 10862978 10862978 G T IGHV1OR21-1 Missense_Mutation p.D92Y 0.07 deleterious(0.01) possibly_damaging(0.884) TCGA-56-7221-01 21 11047561 11047561 C A BAGE2 RNA 0.03 TCGA-56-7221-01 21 47767397 47767397 G C PCNT Missense_Mutation p.E335Q 0.72 probably_damaging(0.942) TCGA-56-7221-01 22 17662278 17662278 G A CECR1 3'UTR 0.21 TCGA-56-7221-01 22 19119814 19119814 C G TSSK2 Missense_Mutation p.T301S 0.23 tolerated_low_confidence(0.93) benign(0.001) TCGA-56-7221-01 22 22930962 22930962 C A IGLV2-33 Missense_Mutation p.H53N 0.23 tolerated_low_confidence(0.23) benign(0.011) TCGA-56-7221-01 22 23523856 23523856 G A BCR Missense_Mutation p.E237K 0.20 deleterious_low_confidence(0) benign(0.292) TCGA-56-7221-01 22 32831765 32831765 C A BPIFC Nonsense_Mutation p.E284* 0.35 TCGA-56-7221-01 22 36718568 36718568 T C MYH9 Splice_Site p.X205_splice 0.52 TCGA-56-7221-01 22 38379467 38379467 T G SOX10 Missense_Mutation p.N109H 0.24 deleterious(0) probably_damaging(0.999) TCGA-56-7221-01 22 39388083 39388083 C T APOBEC3B Missense_Mutation p.P355S 0.17 deleterious(0.04) possibly_damaging(0.779) TCGA-56-7221-01 22 42456372 42456372 C A NAGA Nonsense_Mutation p.E383* 0.45 TCGA-56-7221-01 22 45244861 45244861 G A ARHGAP8 Silent p.V388V 0.16 TCGA-56-7221-01 2 101010001 101010001 G T CHST10 Missense_Mutation p.H259Q 0.14 deleterious(0.01) benign(0.099) TCGA-56-7221-01 2 109405316 109405316 G T CCDC138 Missense_Mutation p.D54Y 0.40 deleterious_low_confidence(0) benign(0.063) TCGA-56-7221-01 2 11347978 11347978 T C ROCK2 Missense_Mutation p.N808S 0.18 tolerated(0.85) benign(0.036) TCGA-56-7221-01 2 11735414 11735414 C T GREB1 Silent p.L578L 0.29 TCGA-56-7221-01 2 121740453 121740453 C T GLI2 Silent p.N560N 0.26 TCGA-56-7221-01 2 133542533 133542533 C A NCKAP5 Silent p.L617L 0.26 TCGA-56-7221-01 2 135011990 135011990 C G MGAT5 Missense_Mutation p.P6A 0.26 deleterious_low_confidence(0.01) benign(0.158) TCGA-56-7221-01 2 135744239 135744239 C G MAP3K19 Missense_Mutation p.E735Q 0.25 deleterious(0.02) benign(0.003) TCGA-56-7221-01 2 136513131 136513131 G A UBXN4 Silent p.Q126Q 0.23 TCGA-56-7221-01 2 141625822 141625822 A T LRP1B Missense_Mutation p.W1394R 0.39 benign(0.012) TCGA-56-7221-01 2 163291711 163291711 C A KCNH7 Missense_Mutation p.G651C 0.33 deleterious(0) probably_damaging(0.969) TCGA-56-7221-01 2 170044745 170044745 A G LRP2 Silent p.Y3021Y 0.29 TCGA-56-7221-01 2 172966179 172966179 G T DLX2 Intron 0.24 TCGA-56-7221-01 2 179438839 179438839 G T TTN Missense_Mutation p.A24007D 0.26 TCGA-56-7221-01 2 179446819 179446819 C G TTN Missense_Mutation p.E22093Q 0.31 TCGA-56-7221-01 2 179447307 179447307 G T TTN Missense_Mutation p.P21959H 0.14 TCGA-56-7221-01 2 179475023 179475023 G T TTN Missense_Mutation p.T17077N 0.30 TCGA-56-7221-01 2 179480136 179480136 G T TTN Missense_Mutation p.P16179H 0.24 TCGA-56-7221-01 2 203825979 203825979 G C CARF Missense_Mutation p.R221P 0.30 deleterious(0) probably_damaging(1) TCGA-56-7221-01 2 212251766 212251766 G T ERBB4 Missense_Mutation p.T1098N 0.26 tolerated(0.5) benign(0.081) TCGA-56-7221-01 2 216200829 216200829 A T ATIC Silent p.G360G 0.27 TCGA-56-7221-01 2 219846803 219846803 C T FEV Silent p.L101L 0.31 TCGA-56-7221-01 2 220334060 220334060 G T SPEG Missense_Mutation p.G1225V 0.11 probably_damaging(0.999) TCGA-56-7221-01 2 233113966 233113966 C T DIS3L2 Silent p.P445P 0.22 TCGA-56-7221-01 2 27277973 27277974 GG - AGBL5 Frame_Shift_Del p.E255Dfs*4 0.20 TCGA-56-7221-01 2 29016762 29016762 C A PPP1CB Silent p.R260R 0.21 TCGA-56-7221-01 2 36805936 36805936 G A FEZ2 Missense_Mutation p.S236F 0.33 deleterious(0) probably_damaging(0.995) TCGA-56-7221-01 2 56420046 56420046 G A CCDC85A Silent p.L237L 0.25 TCGA-56-7221-01 2 71829919 71829919 C A DYSF Nonsense_Mutation p.S1314* 0.23 TCGA-56-7221-01 2 73520482 73520482 C T EGR4 Silent p.R91R 0.31 TCGA-56-7221-01 2 74690121 74690121 G A MOGS Silent p.T265T 0.11 TCGA-56-7221-01 2 89339798 89339798 C G IGKV1-12 Missense_Mutation p.D92H 0.19 deleterious(0.01) benign(0.138) TCGA-56-7221-01 2 90229397 90229397 G T IGKV1D-42 Missense_Mutation p.A73S 0.31 deleterious(0.03) possibly_damaging(0.786) TCGA-56-7221-01 2 96581888 96581888 T A ANKRD36C Intron 0.26 TCGA-56-7221-01 2 98920259 98920259 C A VWA3B Missense_Mutation p.P1172Q 0.28 tolerated(0.1) benign(0.043) TCGA-56-7221-01 3 105400735 105400735 G C CBLB Intron 0.45 TCGA-56-7221-01 3 10861224 10861224 G A SLC6A11 Missense_Mutation p.G111R 0.37 deleterious(0.02) probably_damaging(1) TCGA-56-7221-01 3 111828410 111828410 A G C3orf52 Intron 0.17 TCGA-56-7221-01 3 112642483 112642483 A G CD200R1 3'UTR 0.21 TCGA-56-7221-01 3 112998129 112998129 C T BOC Missense_Mutation p.T616M 0.37 tolerated(1) benign(0.015) TCGA-56-7221-01 3 133167415 133167415 A T BFSP2 Missense_Mutation p.T219S 0.24 tolerated(0.11) benign(0.103) TCGA-56-7221-01 3 133553468 133553468 C A RAB6B Silent p.A171A 0.33 TCGA-56-7221-01 3 138724450 138724450 G T PRR23A Missense_Mutation p.R221S 0.18 deleterious(0) benign(0.277) TCGA-56-7221-01 3 155200641 155200641 G T PLCH1 Silent p.T1066T 0.37 TCGA-56-7221-01 3 160968630 160968630 G A NMD3 Missense_Mutation p.E482K 0.39 deleterious(0.01) possibly_damaging(0.765) TCGA-56-7221-01 3 186507997 186507997 G C RFC4 Silent p.L310L 0.29 TCGA-56-7221-01 3 194790725 194790725 G A XXYLT1 Missense_Mutation p.R301C 0.34 deleterious(0) probably_damaging(0.99) TCGA-56-7221-01 4 113333133 113333133 A G ALPK1 Missense_Mutation p.I143V 0.09 tolerated(0.16) benign(0.02) TCGA-56-7221-01 4 119161748 119161748 C G NDST3 Missense_Mutation p.R730G 0.51 tolerated(0.48) benign(0) TCGA-56-7221-01 4 123255683 123255683 C T KIAA1109 Missense_Mutation p.P3944L 0.58 possibly_damaging(0.889) TCGA-56-7221-01 4 146695683 146695683 C G ZNF827 Missense_Mutation p.K945N 0.44 tolerated(0.08) possibly_damaging(0.763) TCGA-56-7221-01 4 153251907 153251907 G A FBXW7 Nonsense_Mutation p.R367* 0.47 TCGA-56-7221-01 4 164247268 164247268 C A NPY1R Missense_Mutation p.G147W 0.41 deleterious(0) probably_damaging(1) TCGA-56-7221-01 4 175899170 175899170 C G ADAM29 3'UTR 0.40 TCGA-56-7221-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.44 deleterious(0.01) possibly_damaging(0.594) TCGA-56-7221-01 4 2209885 2209885 G A POLN Silent p.A181A 0.65 TCGA-56-7221-01 4 46053540 46053540 A T GABRG1 Silent p.V344V 0.36 TCGA-56-7221-01 4 47938717 47938717 T A CNGA1 Missense_Mutation p.K667N 0.40 deleterious(0) probably_damaging(1) TCGA-56-7221-01 4 55955088 55955088 A T KDR Missense_Mutation p.F1153I 0.35 deleterious(0) probably_damaging(0.998) TCGA-56-7221-01 4 62598703 62598703 C G LPHN3 Missense_Mutation p.T209R 0.15 deleterious(0) probably_damaging(1) TCGA-56-7221-01 4 759970 759970 C T PCGF3 3'UTR 0.56 TCGA-56-7221-01 4 87694009 87694009 G T PTPN13 Silent p.S1754S 0.37 TCGA-56-7221-01 4 88959614 88959614 G A PKD2 Missense_Mutation p.S352N 0.09 tolerated(0.97) benign(0.007) TCGA-56-7221-01 4 96141264 96141264 A T UNC5C Missense_Mutation p.L391Q 0.24 deleterious(0) possibly_damaging(0.845) TCGA-56-7221-01 5 115177209 115177209 G T ATG12 Nonsense_Mutation p.S14* 0.31 TCGA-56-7221-01 5 115320328 115320328 G T AQPEP Silent p.T300T 0.33 TCGA-56-7221-01 5 127611833 127611833 C A FBN2 Missense_Mutation p.Q2497H 0.54 deleterious(0.04) probably_damaging(0.986) TCGA-56-7221-01 5 140573332 140573332 C T PCDHB10 Silent p.L403L 0.40 TCGA-56-7221-01 5 157078295 157078295 G C SOX30 Silent p.L264L 0.36 TCGA-56-7221-01 5 158250228 158250228 C A EBF1 Missense_Mutation p.R245L 0.33 deleterious(0) possibly_damaging(0.775) TCGA-56-7221-01 5 176636710 176636710 C G NSD1 Nonsense_Mutation p.S437* 0.39 TCGA-56-7221-01 5 23509171 23509171 G T PRDM9 Missense_Mutation p.S10I 0.26 deleterious_low_confidence(0) unknown(0) TCGA-56-7221-01 5 23522926 23522926 C T PRDM9 Missense_Mutation p.H272Y 0.44 deleterious(0) benign(0.246) TCGA-56-7221-01 5 24535903 24535903 T A CDH10 Silent p.T185T 0.33 TCGA-56-7221-01 5 3599686 3599686 C A IRX1 Missense_Mutation p.S208R 0.38 deleterious(0) probably_damaging(0.969) TCGA-56-7221-01 5 40931239 40931239 C G C7 Missense_Mutation p.Q46E 0.28 deleterious(0.03) possibly_damaging(0.491) TCGA-56-7221-01 5 40999840 40999840 G T MROH2B Missense_Mutation p.H1508Q 0.50 tolerated(0.37) possibly_damaging(0.754) TCGA-56-7221-01 5 41186223 41186223 C G C6 Missense_Mutation p.R225S 0.49 tolerated(0.73) benign(0.031) TCGA-56-7221-01 5 41842803 41842803 C A OXCT1 Silent p.A215A 0.37 TCGA-56-7221-01 5 76708051 76708051 C G PDE8B Missense_Mutation p.T568R 0.36 deleterious(0) probably_damaging(1) TCGA-56-7221-01 5 88047698 88047698 G T MEF2C Silent p.R207R 0.41 TCGA-56-7221-01 5 94861338 94861338 T C TTC37 Missense_Mutation p.K392E 0.53 deleterious(0.02) benign(0.371) TCGA-56-7221-01 6 101092006 101092006 C A ASCC3 Splice_Site p.X1212_splice 0.26 TCGA-56-7221-01 6 102266316 102266316 A T GRIK2 Silent p.T425T 0.38 TCGA-56-7221-01 6 116720612 116720612 A G DSE Missense_Mutation p.I67V 0.26 deleterious(0.03) benign(0.114) TCGA-56-7221-01 6 118880157 118880157 C A PLN Missense_Mutation p.R25S 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.683) TCGA-56-7221-01 6 132031451 132031451 C A CTAGE9 Missense_Mutation p.G236V 0.16 deleterious(0) benign(0.005) TCGA-56-7221-01 6 137815050 137815050 C T OLIG3 Silent p.L86L 0.32 TCGA-56-7221-01 6 152462425 152462425 C A SYNE1 Missense_Mutation p.V8387L 0.18 benign(0.06) TCGA-56-7221-01 6 152655386 152655386 C A SYNE1 Missense_Mutation p.S4184I 0.36 benign(0.063) TCGA-56-7221-01 6 159655334 159655334 C G FNDC1 Missense_Mutation p.R1264G 0.22 deleterious_low_confidence(0.03) unknown(0) TCGA-56-7221-01 6 160489400 160489400 C - IGF2R Frame_Shift_Del p.P1413Rfs*23 0.25 TCGA-56-7221-01 6 160557658 160557658 G C SLC22A1 Missense_Mutation p.R346P 0.25 deleterious(0.01) benign(0.21) TCGA-56-7221-01 6 160679540 160679540 C G SLC22A2 Missense_Mutation p.A84P 0.28 tolerated(0.18) benign(0.049) TCGA-56-7221-01 6 17837317 17837317 T A KIF13A Missense_Mutation p.N316I 0.28 deleterious(0) probably_damaging(1) TCGA-56-7221-01 6 28483501 28483501 G A GPX6 Missense_Mutation p.A7V 0.26 tolerated_low_confidence(0.27) benign(0.016) TCGA-56-7221-01 6 31124580 31124580 G A CCHCR1 Missense_Mutation p.T142I 0.25 tolerated(0.16) benign(0.007) TCGA-56-7221-01 6 34498326 34498326 G T PACSIN1 Silent p.G333G 0.32 TCGA-56-7221-01 6 43403597 43403597 C T ABCC10 Missense_Mutation p.L573F 0.30 deleterious(0) benign(0.037) TCGA-56-7221-01 6 51890878 51890878 C A PKHD1 Nonsense_Mutation p.E1244* 0.26 TCGA-56-7221-01 6 51890879 51890879 C A PKHD1 Silent p.T1243T 0.26 TCGA-56-7221-01 6 54214520 54214520 A T TINAG Silent p.V302V 0.26 TCGA-56-7221-01 6 56469779 56469779 T A DST Intron 0.29 TCGA-56-7221-01 6 74516750 74516750 T C CD109 Silent p.L1048L 0.31 TCGA-56-7221-01 6 90039597 90039597 C T UBE2J1 Missense_Mutation p.R253Q 0.48 tolerated(0.11) possibly_damaging(0.652) TCGA-56-7221-01 6 90409942 90409942 C G MDN1 Missense_Mutation p.E2904Q 0.26 possibly_damaging(0.548) TCGA-56-7221-01 6 96054057 96054057 G C MANEA Missense_Mutation p.A389P 0.32 deleterious(0) probably_damaging(1) TCGA-56-7221-01 7 106509334 106509334 G T PIK3CG Missense_Mutation p.S443I 0.12 tolerated(0.11) benign(0.171) TCGA-56-7221-01 7 120387837 120387837 C T KCND2 Silent p.T606T 0.56 TCGA-56-7221-01 7 147259273 147259273 G A CNTNAP2 Silent p.Q607Q 0.53 TCGA-56-7221-01 7 149416763 149416763 G T KRBA1 Missense_Mutation p.G12W 0.55 deleterious(0) probably_damaging(0.998) TCGA-56-7221-01 7 155503930 155503930 C G RBM33 Missense_Mutation p.Q328E 0.41 tolerated(0.06) benign(0.041) TCGA-56-7221-01 7 21630952 21630952 C A DNAH11 Missense_Mutation p.D808E 0.56 benign(0.233) TCGA-56-7221-01 7 23768756 23768756 G A STK31 Missense_Mutation p.R124Q 0.15 deleterious(0.04) benign(0.229) TCGA-56-7221-01 7 25266354 25266354 G T NPVF Missense_Mutation p.L144M 0.45 tolerated(0.08) probably_damaging(0.971) TCGA-56-7221-01 7 38247050 38247050 G T STARD3NL Intron 0.25 TCGA-56-7221-01 7 48318428 48318428 C G ABCA13 Missense_Mutation p.S2546C 0.13 probably_damaging(0.935) TCGA-56-7221-01 7 48319222 48319222 C T ABCA13 Nonsense_Mutation p.Q2811* 0.15 TCGA-56-7221-01 7 65220800 65220800 G C SNORA22 3'Flank 0.16 TCGA-56-7221-01 7 6647609 6647609 C T C7orf26 Silent p.I389I 0.39 TCGA-56-7221-01 7 83590762 83590762 C A SEMA3A Missense_Mutation p.W747C 0.43 deleterious(0) probably_damaging(0.999) TCGA-56-7221-01 7 83590763 83590763 C A SEMA3A Missense_Mutation p.W747L 0.42 tolerated(0.15) probably_damaging(0.997) TCGA-56-7221-01 7 86998781 86998781 A C CROT Missense_Mutation p.T241P 0.43 deleterious(0) possibly_damaging(0.624) TCGA-56-7221-01 7 86998786 86998786 G T CROT Silent p.P242P 0.43 TCGA-56-7221-01 7 87505989 87505989 C A DBF4 5'UTR 0.55 TCGA-56-7221-01 7 8791393 8791393 G T NXPH1 Silent p.S270S 0.27 TCGA-56-7221-01 7 8791395 8791395 G A NXPH1 Missense_Mutation p.G271E 0.25 deleterious(0) probably_damaging(1) TCGA-56-7221-01 7 88423573 88423573 T A C7orf62 Silent p.T228T 0.46 TCGA-56-7221-01 7 94057003 94057003 G T COL1A2 Missense_Mutation p.G1111V 0.46 unknown(0) TCGA-56-7221-01 7 94058738 94058738 G C COL1A2 Missense_Mutation p.C1317S 0.36 unknown(0) TCGA-56-7221-01 7 99074026 99074026 C T ZNF789 Intron 0.08 TCGA-56-7221-01 7 99798437 99798437 C A STAG3 Missense_Mutation p.H636N 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-56-7221-01 8 105105732 105105732 G C RIMS2 Intron 0.47 TCGA-56-7221-01 8 105503017 105503017 G C LRP12 Missense_Mutation p.R822G 0.18 deleterious_low_confidence(0) benign(0.001) TCGA-56-7221-01 8 105521184 105521184 G A LRP12 Silent p.G85G 0.15 TCGA-56-7221-01 8 110986214 110986214 T A KCNV1 Missense_Mutation p.Q135L 0.14 deleterious(0) probably_damaging(0.991) TCGA-56-7221-01 8 124359506 124359506 C A ATAD2 Nonsense_Mutation p.E680* 0.48 TCGA-56-7221-01 8 126369990 126369990 G T NSMCE2 Missense_Mutation p.G186C 0.09 deleterious(0) probably_damaging(1) TCGA-56-7221-01 8 141301163 141301163 G C TRAPPC9 Missense_Mutation p.Q693E 0.54 tolerated(0.45) possibly_damaging(0.521) TCGA-56-7221-01 8 144799916 144799916 C T MAPK15 Missense_Mutation p.A40V 0.35 deleterious(0) probably_damaging(1) TCGA-56-7221-01 8 144812700 144812700 C T FAM83H Missense_Mutation p.G18E 0.20 tolerated(0.05) possibly_damaging(0.673) TCGA-56-7221-01 8 19218825 19218825 C T SH2D4A Silent p.L236L 0.61 TCGA-56-7221-01 8 23116313 23116313 G A CHMP7 Silent p.K343K 0.75 TCGA-56-7221-01 8 59409292 59409292 C T CYP7A1 Missense_Mutation p.R260H 0.11 deleterious(0) probably_damaging(1) TCGA-56-7221-01 8 75756234 75756234 G T PI15 Missense_Mutation p.A98S 0.12 tolerated(0.07) probably_damaging(0.998) TCGA-56-7221-01 8 77765821 77765821 G T ZFHX4 Missense_Mutation p.A2222S 0.45 benign(0.004) TCGA-56-7221-01 8 86354402 86354402 A T CA3 Silent p.G111G 0.34 TCGA-56-7221-01 8 88885992 88885992 C - DCAF4L2 Frame_Shift_Del p.A70Qfs*20 0.08 TCGA-56-7221-01 8 95164115 95164115 G T CDH17 Missense_Mutation p.P593T 0.42 deleterious(0) probably_damaging(0.992) TCGA-56-7221-01 9 104449106 104449106 G T GRIN3A Missense_Mutation p.S359Y 0.16 deleterious(0) possibly_damaging(0.838) TCGA-56-7221-01 9 109690992 109690992 A T ZNF462 Missense_Mutation p.H1600L 0.12 benign(0.443) TCGA-56-7221-01 9 120475066 120475066 A T TLR4 Silent p.P220P 0.12 TCGA-56-7221-01 9 125141112 125141112 C G PTGS1 Missense_Mutation p.S137R 0.22 deleterious(0) possibly_damaging(0.892) TCGA-56-7221-01 9 125486864 125486864 T C OR1L4 Missense_Mutation p.V199A 0.07 tolerated(0.16) benign(0.042) TCGA-56-7221-01 9 125512722 125512722 T C OR1L6 Missense_Mutation p.V199A 0.14 tolerated(0.09) benign(0.06) TCGA-56-7221-01 9 126132504 126132504 G A CRB2 Missense_Mutation p.R391H 0.23 tolerated(0.38) possibly_damaging(0.812) TCGA-56-7221-01 9 139118669 139118669 T C QSOX2 Missense_Mutation p.N127S 0.18 deleterious(0) probably_damaging(0.99) TCGA-56-7221-01 9 139616411 139616411 C T FAM69B Silent p.V79V 0.42 TCGA-56-7221-01 9 139616461 139616461 C A FAM69B Nonsense_Mutation p.S96* 0.39 TCGA-56-7221-01 9 21971029 21971029 C T CDKN2A Nonsense_Mutation p.W110* 0.28 TCGA-56-7221-01 9 91150397 91150397 G C NXNL2 Silent p.A16A 0.34 TCGA-56-7221-01 9 97088151 97088151 G C NUTM2F Missense_Mutation p.L28V 0.27 tolerated(0.17) probably_damaging(0.999) TCGA-56-7221-01 X 105921437 105921437 T C CXorf57 Silent p.N839N 0.61 TCGA-56-7221-01 X 107037781 107037781 A G NCBP2L Missense_Mutation p.T111A 0.45 tolerated(0.14) benign(0.052) TCGA-56-7221-01 X 107288356 107288356 A G VSIG1 5'UTR 0.50 TCGA-56-7221-01 X 136649544 136649544 G A ZIC3 Missense_Mutation p.A232T 0.50 tolerated(0.16) benign(0.018) TCGA-56-7221-01 X 140995017 140995017 C T MAGEC1 Silent p.L609L 0.57 TCGA-56-7221-01 X 1422886 1422886 C T CSF2RA Silent p.G373G 0.42 TCGA-56-7221-01 X 142795377 142795377 C G SPANXN2 Missense_Mutation p.D101H 0.47 deleterious(0.01) unknown(0) TCGA-56-7221-01 X 153667426 153667426 G A GDI1 Missense_Mutation p.V110I 0.68 deleterious(0) possibly_damaging(0.839) TCGA-56-7221-01 X 16859853 16859853 C T TXLNG Silent p.S517S 0.52 TCGA-56-7221-01 X 70357662 70357662 G A MED12 Silent p.Q1971Q 0.64 TCGA-56-7222-01 10 11505255 11505255 C - USP6NL Frame_Shift_Del p.E575Sfs*62 0.33 TCGA-56-7222-01 10 123298115 123298115 C A FGFR2 Missense_Mutation p.D247Y 0.55 deleterious(0) probably_damaging(0.986) TCGA-56-7222-01 10 28229566 28229566 C A ARMC4 Missense_Mutation p.A638S 0.36 deleterious(0.04) probably_damaging(0.981) TCGA-56-7222-01 10 32863460 32863460 G T C10ORF68 Intron 0.22 TCGA-56-7222-01 10 38305844 38305844 G T ZNF33A Missense_Mutation p.V19L 0.41 deleterious(0.02) possibly_damaging(0.907) TCGA-56-7222-01 10 44873975 44873975 C A CXCL12 Intron 0.24 TCGA-56-7222-01 10 45643063 45643063 C T RP11-445N18.7 RNA 0.25 TCGA-56-7222-01 10 52575911 52575911 G T A1CF Silent p.G340G 0.60 TCGA-56-7222-01 10 5994963 5994963 T A IL15RA 3'UTR 0.26 TCGA-56-7222-01 10 61574454 61574454 A C CCDC6 Silent p.V214V 0.50 TCGA-56-7222-01 10 69926203 69926203 C A MYPN Missense_Mutation p.H585N 0.61 tolerated(0.14) probably_damaging(0.995) TCGA-56-7222-01 10 70406106 70406106 C T TET1 Missense_Mutation p.P1207L 0.58 deleterious(0.02) probably_damaging(0.953) TCGA-56-7222-01 10 89717642 89717642 A - PTEN Frame_Shift_Del p.K223Rfs*33 0.32 TCGA-56-7222-01 11 10789420 10789420 A G CTR9 Missense_Mutation p.Q585R 0.38 deleterious(0) benign(0.035) TCGA-56-7222-01 11 113639581 113639581 G C ZW10 Missense_Mutation p.L72V 0.15 tolerated(0.3) benign(0.014) TCGA-56-7222-01 11 113934224 113934224 C G ZBTB16 Missense_Mutation p.Q68E 0.29 tolerated(0.15) benign(0.138) TCGA-56-7222-01 11 114393133 114393134 - T NXPE1 Frame_Shift_Ins p.H259Tfs*2 0.10 TCGA-56-7222-01 11 118770165 118770165 C G BCL9L Missense_Mutation p.Q1153H 0.21 benign(0.01) TCGA-56-7222-01 11 121420676 121420676 G - SORL1 Frame_Shift_Del p.G687Vfs*4 0.25 TCGA-56-7222-01 11 1221794 1221794 G A MUC5AC RNA 0.20 TCGA-56-7222-01 11 122931036 122931036 C T HSPA8 Intron 0.19 TCGA-56-7222-01 11 124413323 124413323 G T OR8B12 Silent p.I76I 0.39 TCGA-56-7222-01 11 124743641 124743641 C A ROBO3 Missense_Mutation p.P556Q 0.16 deleterious(0) probably_damaging(0.982) TCGA-56-7222-01 11 126081570 126081570 G T FAM118B 5'UTR 0.44 TCGA-56-7222-01 11 133806052 133806052 G T IGSF9B Silent p.T239T 0.45 TCGA-56-7222-01 11 17470125 17470125 C T ABCC8 Missense_Mutation p.D424N 0.40 deleterious(0) probably_damaging(0.994) TCGA-56-7222-01 11 18195474 18195482 TCTTCCTCC - MRGPRX4 In_Frame_Del p.F225_L227del 0.31 TCGA-56-7222-01 11 2167474 2167474 G A INS-IGF2 3'Flank 0.18 TCGA-56-7222-01 11 30915808 30915808 A - DCDC1 Frame_Shift_Del p.I1627Kfs*18 0.09 TCGA-56-7222-01 11 408725 408725 C T SIGIRR Missense_Mutation p.G59E 0.44 tolerated(1) benign(0.003) TCGA-56-7222-01 11 45671881 45671881 C T CHST1 Missense_Mutation p.R198H 0.52 tolerated(0.29) benign(0.007) TCGA-56-7222-01 11 46567309 46567309 C - AMBRA1 Frame_Shift_Del p.W132Cfs*22 0.23 TCGA-56-7222-01 11 48166373 48166373 G T PTPRJ Missense_Mutation p.V908F 0.25 deleterious(0) probably_damaging(0.991) TCGA-56-7222-01 11 48346890 48346890 G T OR4C3 Missense_Mutation p.G133V 0.06 deleterious(0.01) probably_damaging(0.959) TCGA-56-7222-01 11 5530770 5530770 C A UBQLN3 Missense_Mutation p.A7S 0.28 tolerated(0.11) possibly_damaging(0.459) TCGA-56-7222-01 11 55563721 55563721 C A OR5D14 Silent p.I230I 0.13 TCGA-56-7222-01 11 55607078 55607079 - C OR5D16 Frame_Shift_Ins p.L287Vfs*11 0.09 TCGA-56-7222-01 11 5624660 5624660 A T TRIM6 Missense_Mutation p.T68S 0.22 deleterious(0.02) benign(0.306) TCGA-56-7222-01 11 56511053 56511053 C T OR9G4 Missense_Mutation p.G79S 0.44 tolerated(1) benign(0.253) TCGA-56-7222-01 11 57995950 57995950 G A OR10Q1 Missense_Mutation p.P133L 0.28 deleterious(0) possibly_damaging(0.74) TCGA-56-7222-01 11 59245232 59245232 G A OR4D10 Silent p.V110V 0.51 TCGA-56-7222-01 11 59480737 59480737 G T OR10V1 Silent p.R194R 0.17 TCGA-56-7222-01 11 59812214 59812214 C A OOSP2 Missense_Mutation p.P105H 0.32 tolerated(0.22) benign(0.007) TCGA-56-7222-01 11 60702219 60702219 G A TMEM132A Missense_Mutation p.G608S 0.17 deleterious(0) probably_damaging(0.999) TCGA-56-7222-01 11 61099030 61099030 C T DDB1 Silent p.E65E 0.34 TCGA-56-7222-01 11 62292008 62292008 G C AHNAK Missense_Mutation p.S3294C 0.46 probably_damaging(0.99) TCGA-56-7222-01 11 62911083 62911083 C T SLC22A24 Missense_Mutation p.D57N 0.44 tolerated(0.16) benign(0.004) TCGA-56-7222-01 11 62985158 62985158 C A SLC22A25 Missense_Mutation p.V186L 0.17 tolerated(0.35) benign(0.012) TCGA-56-7222-01 11 70202332 70202332 G A PPFIA1 Missense_Mutation p.A852T 0.34 tolerated(0.07) benign(0.006) TCGA-56-7222-01 11 70332734 70332734 C T SHANK2 Missense_Mutation p.A1223T 0.37 deleterious(0) possibly_damaging(0.499) TCGA-56-7222-01 11 71949099 71949099 A C INPPL1 Missense_Mutation p.Q1189P 0.25 tolerated(0.13) benign(0) TCGA-56-7222-01 11 89936597 89936597 T A CHORDC1 Splice_Site p.X224_splice 0.37 TCGA-56-7222-01 12 100646310 100646310 A G DEPDC4 Nonstop_Mutation p.*295Rext*7 0.36 TCGA-56-7222-01 12 102043084 102043084 C G MYBPC1 Missense_Mutation p.R390G 0.17 deleterious(0) benign(0.169) TCGA-56-7222-01 12 113425183 113425183 A G OAS2 Intron 0.40 TCGA-56-7222-01 12 113872001 113872001 C - SDSL Frame_Shift_Del p.P141Rfs*6 0.22 TCGA-56-7222-01 12 124358202 124358202 G T DNAH10 Missense_Mutation p.G2510V 0.46 probably_damaging(0.981) TCGA-56-7222-01 12 22697053 22697053 G C C2CD5 Missense_Mutation p.A11G 0.47 deleterious(0.01) benign(0.345) TCGA-56-7222-01 12 40076726 40076726 A T C12orf40 Missense_Mutation p.T334S 0.38 tolerated(0.25) benign(0.041) TCGA-56-7222-01 12 41331464 41331464 T C CNTN1 Silent p.Y401Y 0.28 TCGA-56-7222-01 12 43944779 43944779 C T ADAMTS20 Missense_Mutation p.C129Y 0.29 deleterious(0) probably_damaging(1) TCGA-56-7222-01 12 49448184 49448184 T A KMT2D Missense_Mutation p.H139L 0.31 unknown(0) TCGA-56-7222-01 12 55615372 55615372 C A OR10A7 Silent p.V188V 0.30 TCGA-56-7222-01 12 55641452 55641452 C A OR6C74 Silent p.P127P 0.39 TCGA-56-7222-01 12 56561908 56561908 T - SMARCC2 Frame_Shift_Del p.K898Sfs*42 0.21 TCGA-56-7222-01 12 65634777 65634777 G T LEMD3 Missense_Mutation p.G739C 0.35 deleterious(0) probably_damaging(0.999) TCGA-56-7222-01 12 7842550 7842550 A T GDF3 Missense_Mutation p.L340H 0.27 deleterious(0) probably_damaging(1) TCGA-56-7222-01 12 78592383 78592383 A T NAV3 Splice_Site p.X2127_splice 0.31 TCGA-56-7222-01 12 78594342 78594342 A G NAV3 Missense_Mutation p.I2247V 0.28 deleterious(0.03) benign(0.001) TCGA-56-7222-01 12 8051591 8051591 G T NANOGP1 RNA 0.37 TCGA-56-7222-01 12 85277775 85277775 A T SLC6A15 Missense_Mutation p.W207R 0.36 deleterious(0) probably_damaging(1) TCGA-56-7222-01 12 91396211 91396211 G A EPYC Silent p.Y44Y 0.29 TCGA-56-7222-01 12 9353501 9353501 G A PZP Silent p.T219T 0.12 TCGA-56-7222-01 12 96360186 96360186 G T AMDHD1 Missense_Mutation p.A365S 0.28 deleterious(0) probably_damaging(0.996) TCGA-56-7222-01 13 101742203 101742203 C A NALCN Silent p.V1128V 0.05 TCGA-56-7222-01 13 102250634 102250634 C A ITGBL1 Missense_Mutation p.P334T 0.78 deleterious(0.05) possibly_damaging(0.821) TCGA-56-7222-01 13 103703642 103703642 A G SLC10A2 Silent p.F242F 0.17 TCGA-56-7222-01 13 115057106 115057106 T C UPF3A Intron 0.24 TCGA-56-7222-01 13 31714385 31714385 T C HSPH1 Missense_Mutation p.E639G 0.61 deleterious(0) probably_damaging(0.999) TCGA-56-7222-01 13 37427700 37427700 G A SMAD9 Silent p.T372T 0.42 TCGA-56-7222-01 13 37607696 37607696 G A SUPT20H Silent p.L199L 0.43 TCGA-56-7222-01 13 37679485 37679485 A T CSNK1A1L 5'UTR 0.64 TCGA-56-7222-01 13 37679487 37679487 G T CSNK1A1L 5'UTR 0.64 TCGA-56-7222-01 13 45602091 45602091 G T GPALPP1 Nonsense_Mutation p.E326* 0.47 TCGA-56-7222-01 13 77743817 77743817 T A MYCBP2 Missense_Mutation p.S1905C 0.42 probably_damaging(0.977) TCGA-56-7222-01 13 79932434 79932434 C A RBM26 Missense_Mutation p.R555L 0.43 deleterious(0) benign(0.413) TCGA-56-7222-01 13 97639972 97639972 G A OXGR1 Silent p.F14F 0.32 TCGA-56-7222-01 13 98829280 98829280 T C RNF113B Missense_Mutation p.S71G 0.43 tolerated(0.56) benign(0.012) TCGA-56-7222-01 13 98829281 98829281 G T RNF113B Missense_Mutation p.H70Q 0.50 tolerated(0.68) benign(0.013) TCGA-56-7222-01 14 100119046 100119046 C T HHIPL1 Silent p.D247D 0.55 TCGA-56-7222-01 14 105409797 105409797 C T AHNAK2 Silent p.K3997K 0.61 TCGA-56-7222-01 14 106780916 106780916 C G IGHV4-28 Silent p.L10L 0.33 TCGA-56-7222-01 14 107218880 107218880 A G IGHV3-74 Silent p.S49S 0.65 TCGA-56-7222-01 14 107282968 107282968 C A IGHV7-81 Missense_Mutation p.A59S 0.57 tolerated(0.18) benign(0.019) TCGA-56-7222-01 14 20248497 20248497 T G OR4M1 Missense_Mutation p.Y6D 0.36 tolerated(0.22) benign(0.001) TCGA-56-7222-01 14 21841535 21841535 C G SUPT16H Missense_Mutation p.D41H 0.12 deleterious(0) probably_damaging(0.99) TCGA-56-7222-01 14 22772320 22772320 A T TRAV39 Silent p.G71G 0.71 TCGA-56-7222-01 14 22772432 22772432 G T TRAV39 Missense_Mutation p.V109L 0.38 tolerated(0.07) possibly_damaging(0.471) TCGA-56-7222-01 14 32563314 32563314 G T ARHGAP5 Nonsense_Mutation p.E1147* 0.63 TCGA-56-7222-01 14 61517238 61517238 G C SLC38A6 Missense_Mutation p.E312Q 0.77 tolerated(0.13) benign(0.32) TCGA-56-7222-01 14 62213738 62213738 A G HIF1A Missense_Mutation p.I830V 0.67 tolerated(1) benign(0.006) TCGA-56-7222-01 14 64891583 64891583 G C MTHFD1 Missense_Mutation p.E263D 0.42 tolerated(0.2) benign(0.002) TCGA-56-7222-01 14 88477880 88477880 G T GPR65 Missense_Mutation p.S230I 0.68 deleterious(0.01) possibly_damaging(0.794) TCGA-56-7222-01 14 93673319 93673319 C G C14orf142 Missense_Mutation p.E22Q 0.70 tolerated(0.08) possibly_damaging(0.714) TCGA-56-7222-01 14 97000833 97000833 G T PAPOLA Missense_Mutation p.W281L 0.58 deleterious(0) probably_damaging(0.987) TCGA-56-7222-01 15 101602853 101602853 A T LRRK1 Silent p.P1624P 0.40 TCGA-56-7222-01 15 25430695 25430695 C T SNORD115-10 5'Flank 0.33 TCGA-56-7222-01 15 25434631 25434631 A G SNORD115-11 RNA 0.28 TCGA-56-7222-01 15 25463882 25463882 C A SNORD115-28 5'Flank 0.39 TCGA-56-7222-01 15 26107841 26107841 G T ATP10A Missense_Mutation p.R135S 0.39 tolerated(0.08) benign(0.233) TCGA-56-7222-01 15 26108098 26108098 C A ATP10A Missense_Mutation p.R49L 0.60 tolerated(0.37) benign(0.159) TCGA-56-7222-01 15 27128704 27128704 G T GABRA5 Missense_Mutation p.R166L 0.22 deleterious(0) possibly_damaging(0.823) TCGA-56-7222-01 15 38782699 38782699 G A RASGRP1 3'UTR 0.08 TCGA-56-7222-01 15 48063931 48063931 C A SEMA6D Silent p.S1057S 0.43 TCGA-56-7222-01 15 55789970 55789970 T C DYX1C1 Missense_Mutation p.I71V 0.30 tolerated(0.53) benign(0.026) TCGA-56-7222-01 15 68582733 68582733 C T FEM1B Missense_Mutation p.P346L 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-56-7222-01 15 72958343 72958354 GTGTTGCCCCTT - GOLGA6B In_Frame_Del p.L611_V614del 0.12 TCGA-56-7222-01 15 79183853 79183853 C A MORF4L1 Missense_Mutation p.T165N 0.25 tolerated(0.17) benign(0.052) TCGA-56-7222-01 16 1552973 1552973 C T TELO2 Silent p.Y604Y 0.24 TCGA-56-7222-01 16 2347854 2347854 C T ABCA3 Silent p.E655E 0.20 TCGA-56-7222-01 16 24185846 24185846 G T PRKCB Missense_Mutation p.A447S 0.19 tolerated(0.1) possibly_damaging(0.556) TCGA-56-7222-01 16 27689090 27689090 G T KIAA0556 Missense_Mutation p.R194M 0.33 deleterious(0) probably_damaging(0.944) TCGA-56-7222-01 16 27689091 27689091 G T KIAA0556 Missense_Mutation p.R194S 0.33 tolerated(0.12) benign(0.044) TCGA-56-7222-01 16 3014477 3014477 C T KREMEN2 5'UTR 0.21 TCGA-56-7222-01 16 49669669 49669669 C T ZNF423 Missense_Mutation p.A1132T 0.17 tolerated(0.36) benign(0.003) TCGA-56-7222-01 16 56913118 56913118 C A SLC12A3 Nonsense_Mutation p.Y438* 0.39 TCGA-56-7222-01 16 57559910 57559910 A - CCDC102A Frame_Shift_Del p.W239Gfs*14 0.35 TCGA-56-7222-01 16 66966086 66966086 T G FAM96B 3'UTR 0.23 TCGA-56-7222-01 16 77896656 77896656 G T VAT1L Silent p.V197V 0.31 TCGA-56-7222-01 16 82185034 82185034 C A MPHOSPH6 Missense_Mutation p.V84F 0.34 deleterious(0) possibly_damaging(0.815) TCGA-56-7222-01 16 82185035 82185035 C G MPHOSPH6 Missense_Mutation p.E83D 0.33 tolerated(0.11) possibly_damaging(0.546) TCGA-56-7222-01 16 84065542 84065542 C T SLC38A8 Missense_Mutation p.A188T 0.19 tolerated(1) benign(0.009) TCGA-56-7222-01 16 89789782 89789782 A C ZNF276 Missense_Mutation p.Y224S 0.14 tolerated(0.68) probably_damaging(0.999) TCGA-56-7222-01 17 11808997 11808997 T A DNAH9 Missense_Mutation p.L3874I 0.62 possibly_damaging(0.817) TCGA-56-7222-01 17 17751039 17751039 G A TOM1L2 Silent p.P478P 0.73 TCGA-56-7222-01 17 29486094 29486094 G T NF1 Nonsense_Mutation p.E91* 0.61 TCGA-56-7222-01 17 38859830 38859830 G T KRT24 Nonsense_Mutation p.S39* 0.61 TCGA-56-7222-01 17 44116516 44116516 C G KANSL1 Missense_Mutation p.V757L 0.75 tolerated(0.19) benign(0.05) TCGA-56-7222-01 17 56320367 56320367 C T LPO Silent p.A9A 0.03 TCGA-56-7222-01 17 61994754 61994754 T A GH1 Missense_Mutation p.Y190F 0.62 tolerated(0.6) benign(0.016) TCGA-56-7222-01 17 62045435 62045435 T G SCN4A Silent p.A328A 0.02 TCGA-56-7222-01 17 7286762 7286762 C G TNK1 Missense_Mutation p.P85A 0.82 deleterious(0.04) benign(0.004) TCGA-56-7222-01 17 72959079 72959079 C T HID1 Missense_Mutation p.S162N 0.65 tolerated(0.07) benign(0.281) TCGA-56-7222-01 17 73723813 73723813 C T ITGB4 Missense_Mutation p.R116W 0.79 deleterious(0.05) possibly_damaging(0.832) TCGA-56-7222-01 17 7530960 7530960 C T SAT2 5'UTR 0.77 TCGA-56-7222-01 17 7578419 7578419 C A TP53 Nonsense_Mutation p.E171* 0.84 TCGA-56-7222-01 17 76046096 76046096 A G TNRC6C Missense_Mutation p.N318S 0.74 tolerated(0.87) benign(0.001) TCGA-56-7222-01 18 5394694 5394694 A G EPB41L3 Silent p.D1084D 0.29 TCGA-56-7222-01 18 59217289 59217289 T A CDH20 Missense_Mutation p.I576K 0.52 deleterious(0) probably_damaging(0.949) TCGA-56-7222-01 18 673088 673088 A C TYMS 3'UTR 0.22 TCGA-56-7222-01 18 7231364 7231364 C G LRRC30 Silent p.L76L 0.24 TCGA-56-7222-01 19 10084883 10084883 C A COL5A3 Silent p.P1156P 0.13 TCGA-56-7222-01 19 10166381 10166381 C A C3P1 RNA 0.09 TCGA-56-7222-01 19 14591241 14591241 C T GIPC1 Missense_Mutation p.M177I 0.14 tolerated(0.07) benign(0.089) TCGA-56-7222-01 19 1506133 1506133 G C ADAMTSL5 Missense_Mutation p.L433V 0.17 tolerated(0.13) benign(0.029) TCGA-56-7222-01 19 15651417 15651417 T A CYP4F22 Silent p.T276T 0.40 TCGA-56-7222-01 19 16045080 16045080 G A CYP4F11 Missense_Mutation p.R47C 0.16 deleterious(0.03) benign(0.017) TCGA-56-7222-01 19 19380998 19380998 C A TM6SF2 Missense_Mutation p.G129C 0.12 deleterious(0.02) probably_damaging(0.948) TCGA-56-7222-01 19 22941619 22941619 A T ZNF99 Silent p.T364T 0.34 TCGA-56-7222-01 19 23329128 23329128 G T ZNF730 Nonsense_Mutation p.E428* 0.11 TCGA-56-7222-01 19 2353238 2353238 G T LLfos-48D6.1 Intron 0.42 TCGA-56-7222-01 19 23926802 23926802 C A ZNF681 Missense_Mutation p.R517L 0.36 tolerated(0.65) possibly_damaging(0.846) TCGA-56-7222-01 19 2811724 2811724 A G THOP1 Missense_Mutation p.N634D 0.19 tolerated(0.05) benign(0.021) TCGA-56-7222-01 19 32873670 32873670 A T ZNF507 Missense_Mutation p.E848V 0.33 deleterious(0.05) probably_damaging(0.95) TCGA-56-7222-01 19 33470921 33470921 G A RHPN2 Missense_Mutation p.S681L 0.15 deleterious_low_confidence(0.01) benign(0.059) TCGA-56-7222-01 19 36004330 36004330 C A DMKN Silent p.L16L 0.32 TCGA-56-7222-01 19 36851418 36851418 G A ZFP14 Missense_Mutation p.P52S 0.18 deleterious(0.02) benign(0.001) TCGA-56-7222-01 19 37853873 37853873 T C HKR1 Silent p.R392R 0.27 TCGA-56-7222-01 19 39127593 39127593 G T EIF3K 3'UTR 0.18 TCGA-56-7222-01 19 39399488 39399488 A G NFKBIB 3'UTR 0.24 TCGA-56-7222-01 19 39734775 39734775 A T IFNL3 Nonsense_Mutation p.L94* 0.41 TCGA-56-7222-01 19 40412111 40412111 C G FCGBP Missense_Mutation p.D1173H 0.43 probably_damaging(0.963) TCGA-56-7222-01 19 40432968 40432968 C T FCGBP Missense_Mutation p.R434Q 0.36 benign(0.019) TCGA-56-7222-01 19 41008122 41008122 G A SPTBN4 Missense_Mutation p.V329M 0.42 deleterious(0) possibly_damaging(0.761) TCGA-56-7222-01 19 43258416 43258416 G T PSG8 3'UTR 0.16 TCGA-56-7222-01 19 44660659 44660659 G C ZNF234 Missense_Mutation p.D164H 0.25 deleterious(0.04) probably_damaging(0.935) TCGA-56-7222-01 19 46112914 46112914 G A EML2 3'UTR 0.17 TCGA-56-7222-01 19 49253607 49253607 C A FUT1 Missense_Mutation p.G311V 0.30 deleterious(0) probably_damaging(1) TCGA-56-7222-01 19 50397526 50397526 T A IL4I1 Missense_Mutation p.Q211L 0.33 deleterious(0) benign(0.14) TCGA-56-7222-01 19 50962009 50962009 C T MYBPC2 Missense_Mutation p.A835V 0.22 tolerated(1) benign(0) TCGA-56-7222-01 19 51380301 51380301 G T KLK2 Intron 0.43 TCGA-56-7222-01 19 53344705 53344705 C T ZNF468 Missense_Mutation p.G281D 0.05 tolerated(0.05) benign(0.027) TCGA-56-7222-01 19 54313572 54313572 C A NLRP12 Silent p.P447P 0.40 TCGA-56-7222-01 19 54313573 54313573 G T NLRP12 Missense_Mutation p.P447Q 0.42 tolerated(0.07) probably_damaging(0.987) TCGA-56-7222-01 19 582522 582522 G T BSG Missense_Mutation p.S368I 0.33 deleterious(0) possibly_damaging(0.707) TCGA-56-7222-01 19 5844394 5844394 A G FUT3 Missense_Mutation p.F153L 0.21 deleterious(0.04) benign(0.331) TCGA-56-7222-01 19 6418834 6418834 G A KHSRP Missense_Mutation p.P220L 0.21 tolerated(0.18) benign(0.018) TCGA-56-7222-01 19 7675603 7675603 G T CAMSAP3 Missense_Mutation p.M333I 0.41 deleterious(0.02) benign(0.009) TCGA-56-7222-01 19 7734314 7734314 G T RETN Missense_Mutation p.E34D 0.20 tolerated(0.47) benign(0.015) TCGA-56-7222-01 19 7830110 7830110 C A CLEC4M Missense_Mutation p.S57Y 0.19 deleterious(0.02) probably_damaging(0.982) TCGA-56-7222-01 1 100353532 100353532 A G AGL Splice_Site p.X894_splice 0.30 TCGA-56-7222-01 1 103348816 103348816 A T COL11A1 Missense_Mutation p.V1637D 0.29 unknown(0) TCGA-56-7222-01 1 104116993 104116993 G T AMY2B Nonsense_Mutation p.G286* 0.30 TCGA-56-7222-01 1 109811805 109811805 A T CELSR2 Silent p.R2235R 0.36 TCGA-56-7222-01 1 111147081 111147081 T C KCNA2 Missense_Mutation p.I108M 0.28 tolerated(0.1) possibly_damaging(0.581) TCGA-56-7222-01 1 111495332 111495332 T A LRIF1 Silent p.L58L 0.44 TCGA-56-7222-01 1 11288858 11288858 T C MTOR Missense_Mutation p.H966R 0.22 tolerated(0.08) benign(0.024) TCGA-56-7222-01 1 114185073 114185073 A G MAGI3 Missense_Mutation p.Q634R 0.18 tolerated(0.07) probably_damaging(0.999) TCGA-56-7222-01 1 114444377 114444377 C G AP4B1 Missense_Mutation p.D157H 0.27 deleterious(0) probably_damaging(0.986) TCGA-56-7222-01 1 117509730 117509730 G T PTGFRN Missense_Mutation p.V613L 0.33 deleterious(0.05) benign(0.442) TCGA-56-7222-01 1 1337476 1337476 A T MRPL20 Missense_Mutation p.V146E 0.21 deleterious_low_confidence(0) possibly_damaging(0.511) TCGA-56-7222-01 1 145561888 145561888 C T ANKRD35 Missense_Mutation p.R526C 0.36 deleterious(0) benign(0.066) TCGA-56-7222-01 1 145561889 145561889 G T ANKRD35 Missense_Mutation p.R526L 0.36 deleterious(0.03) benign(0) TCGA-56-7222-01 1 149921613 149921613 A G OTUD7B Missense_Mutation p.S348P 0.34 deleterious(0) probably_damaging(0.999) TCGA-56-7222-01 1 150259074 150259074 G T C1orf51 Missense_Mutation p.G289V 0.31 deleterious(0) possibly_damaging(0.494) TCGA-56-7222-01 1 150307514 150307514 T C PRPF3 Silent p.P279P 0.33 TCGA-56-7222-01 1 152190751 152190751 C T HRNR Silent p.Q1118Q 0.30 TCGA-56-7222-01 1 152325465 152325465 G A FLG2 Silent p.Y1599Y 0.05 TCGA-56-7222-01 1 155313229 155313229 T C ASH1L Silent p.T2723T 0.31 TCGA-56-7222-01 1 155870341 155870341 T C RIT1 Silent p.A183A 0.33 TCGA-56-7222-01 1 156531668 156531668 G C IQGAP3 Missense_Mutation p.L335V 0.29 tolerated(0.05) possibly_damaging(0.615) TCGA-56-7222-01 1 15753677 15753677 G T EFHD2 Missense_Mutation p.G163V 0.33 deleterious(0) probably_damaging(1) TCGA-56-7222-01 1 158687456 158687456 G C OR6K3 Silent p.L150L 0.05 TCGA-56-7222-01 1 160326980 160326980 G T NCSTN Missense_Mutation p.W648C 0.38 deleterious(0) probably_damaging(1) TCGA-56-7222-01 1 161022269 161022269 C A ARHGAP30 Nonsense_Mutation p.E301* 0.31 TCGA-56-7222-01 1 165370512 165370512 C A RXRG Silent p.L460L 0.31 TCGA-56-7222-01 1 168513212 168513212 C T XCL2 5'UTR 0.31 TCGA-56-7222-01 1 170007456 170007456 A G KIFAP3 Silent p.D164D 0.25 TCGA-56-7222-01 1 177911122 177911122 C T SEC16B Silent p.Q645Q 0.33 TCGA-56-7222-01 1 181705414 181705414 G T CACNA1E Missense_Mutation p.S1089I 0.32 tolerated(0.1) benign(0.403) TCGA-56-7222-01 1 182638785 182638785 A G RGS8 Intron 0.26 TCGA-56-7222-01 1 190195235 190195235 T C BRINP3 Missense_Mutation p.Y313C 0.08 tolerated(0.18) possibly_damaging(0.527) TCGA-56-7222-01 1 202411692 202411692 C T PPP1R12B Silent p.Y553Y 0.18 TCGA-56-7222-01 1 206778796 206778796 C T EIF2D Missense_Mutation p.G163R 0.07 deleterious(0) probably_damaging(0.989) TCGA-56-7222-01 1 210637863 210637863 G T HHAT Missense_Mutation p.A292S 0.03 deleterious(0.01) probably_damaging(0.978) TCGA-56-7222-01 1 220180615 220180615 T C EPRS Silent p.A557A 0.16 TCGA-56-7222-01 1 228452066 228452066 G T OBSCN Missense_Mutation p.R1796L 0.21 possibly_damaging(0.58) TCGA-56-7222-01 1 228468398 228468398 A G OBSCN Missense_Mutation p.T3129A 0.28 benign(0.068) TCGA-56-7222-01 1 231349717 231349717 C A TRIM67 Missense_Mutation p.N760K 0.43 deleterious(0) probably_damaging(0.999) TCGA-56-7222-01 1 235357391 235357391 T G ARID4B Missense_Mutation p.K688Q 0.37 deleterious(0) probably_damaging(0.996) TCGA-56-7222-01 1 237780738 237780738 A C RYR2 Silent p.A1956A 0.23 TCGA-56-7222-01 1 237947256 237947256 G C RYR2 Missense_Mutation p.E4082Q 0.65 possibly_damaging(0.673) TCGA-56-7222-01 1 247875885 247875885 G A OR6F1 Missense_Mutation p.P58L 0.24 deleterious(0) possibly_damaging(0.901) TCGA-56-7222-01 1 248039255 248039255 G T TRIM58 Missense_Mutation p.D309Y 0.38 deleterious(0) probably_damaging(0.994) TCGA-56-7222-01 1 248512190 248512190 G T OR14C36 Missense_Mutation p.M38I 0.34 tolerated(0.48) benign(0.005) TCGA-56-7222-01 1 248844941 248844941 G A OR14I1 Missense_Mutation p.T222M 0.32 deleterious(0.04) possibly_damaging(0.783) TCGA-56-7222-01 1 32210292 32210292 C A BAI2 Missense_Mutation p.W293C 0.31 tolerated(0.18) probably_damaging(0.928) TCGA-56-7222-01 1 40960620 40960620 A G ZFP69 Missense_Mutation p.E157G 0.05 deleterious(0.05) benign(0) TCGA-56-7222-01 1 45798463 45798463 C A MUTYH Missense_Mutation p.G180V 0.30 deleterious(0) probably_damaging(0.993) TCGA-56-7222-01 1 45798464 45798464 C A MUTYH Missense_Mutation p.G180C 0.30 deleterious(0) probably_damaging(0.998) TCGA-56-7222-01 1 47402407 47402407 T C CYP4A11 Missense_Mutation p.T147A 0.06 deleterious(0.03) possibly_damaging(0.777) TCGA-56-7222-01 1 47533297 47533297 G T CYP4Z1 Silent p.L45L 0.36 TCGA-56-7222-01 1 47685732 47685732 G T TAL1 Missense_Mutation p.P219Q 0.27 deleterious(0) probably_damaging(1) TCGA-56-7222-01 1 4772039 4772039 G A AJAP1 Missense_Mutation p.D37N 0.36 deleterious(0) probably_damaging(0.95) TCGA-56-7222-01 1 48694710 48694710 G T SLC5A9 Intron 0.46 TCGA-56-7222-01 1 52276042 52276042 T A NRD1 Missense_Mutation p.Q673L 0.30 tolerated(0.25) benign(0.005) TCGA-56-7222-01 1 54375770 54375770 C A DIO1 3'UTR 0.45 TCGA-56-7222-01 1 57602222 57602222 C A DAB1 Missense_Mutation p.K100N 0.31 deleterious(0) possibly_damaging(0.901) TCGA-56-7222-01 1 70889984 70889984 C G CTH Missense_Mutation p.T158S 0.32 tolerated(0.27) benign(0.28) TCGA-56-7222-01 1 75055702 75055702 C G C1orf173 Missense_Mutation p.E597Q 0.23 deleterious(0.01) probably_damaging(0.982) TCGA-56-7222-01 1 76253234 76253234 T C RABGGTB Missense_Mutation p.L19S 0.40 deleterious(0.05) benign(0.281) TCGA-56-7222-01 1 86252145 86252145 C A COL24A1 Splice_Site p.X1318_splice 0.41 TCGA-56-7222-01 1 86590726 86590726 G A COL24A1 Silent p.S431S 0.13 TCGA-56-7222-01 1 91731617 91731617 G A HFM1 Missense_Mutation p.L1311F 0.17 tolerated_low_confidence(0.96) benign(0.001) TCGA-56-7222-01 20 14306425 14306425 T A FLRT3 Silent p.A576A 0.42 TCGA-56-7222-01 20 30584958 30584958 A G XKR7 Missense_Mutation p.T480A 0.60 tolerated(0.14) possibly_damaging(0.676) TCGA-56-7222-01 20 31699296 31699296 G A BPIFB4 3'UTR 0.57 TCGA-56-7222-01 20 44708061 44708061 C T NCOA5 Translation_Start_Site p.M1? 0.21 deleterious_low_confidence(0.03) benign(0.077) TCGA-56-7222-01 20 45867859 45867859 T A ZMYND8 Missense_Mutation p.T770S 0.04 tolerated_low_confidence(0.81) benign(0.003) TCGA-56-7222-01 20 47688952 47688952 T C CSE1L Silent p.L300L 0.10 TCGA-56-7222-01 20 57428738 57428738 G T GNAS Nonsense_Mutation p.E140* 0.33 TCGA-56-7222-01 20 60573191 60573193 CCT - TAF4 Splice_Site p.X990_splice 0.46 TCGA-56-7222-01 20 60886468 60886468 T G LAMA5 Missense_Mutation p.T3311P 0.17 benign(0.002) TCGA-56-7222-01 20 62737750 62737750 C T NPBWR2 Silent p.V145V 0.34 TCGA-56-7222-01 20 858922 858922 G C ANGPT4 Missense_Mutation p.H368D 0.10 deleterious(0.01) probably_damaging(0.984) TCGA-56-7222-01 20 8745888 8745888 A G PLCB1 Missense_Mutation p.H938R 0.22 tolerated(0.54) benign(0.326) TCGA-56-7222-01 21 11038996 11038996 T C BAGE2 RNA 0.05 TCGA-56-7222-01 21 19704489 19704489 C A TMPRSS15 Silent p.T522T 0.58 TCGA-56-7222-01 21 31869176 31869176 A T KRTAP19-4 Nonstop_Mutation p.*85Rext*? 0.53 TCGA-56-7222-01 21 32638406 32638406 G A TIAM1 Missense_Mutation p.H295Y 0.61 deleterious(0.05) benign(0.008) TCGA-56-7222-01 21 32638502 32638502 C A TIAM1 Missense_Mutation p.D263Y 0.53 deleterious(0.02) benign(0.14) TCGA-56-7222-01 21 33948985 33948985 G A TCP10L 3'UTR 0.73 TCGA-56-7222-01 22 19481855 19481855 A G CDC45 Missense_Mutation p.I164M 0.23 tolerated(0.13) benign(0.027) TCGA-56-7222-01 22 28293855 28293855 T C PITPNB Missense_Mutation p.I75V 0.28 tolerated(0.09) benign(0.001) TCGA-56-7222-01 22 29490264 29490264 G T KREMEN1 Missense_Mutation p.G39V 0.34 deleterious(0) probably_damaging(1) TCGA-56-7222-01 22 51015827 51015827 T C CPT1B Silent p.T69T 0.34 TCGA-56-7222-01 2 100209661 100209661 C A AFF3 Missense_Mutation p.R846L 0.63 tolerated(0.06) probably_damaging(0.935) TCGA-56-7222-01 2 101667053 101667053 T G TBC1D8 Missense_Mutation p.N213H 0.10 deleterious(0) possibly_damaging(0.56) TCGA-56-7222-01 2 108910144 108910144 G - SULT1C2 Frame_Shift_Del p.K9Nfs*3 0.13 TCGA-56-7222-01 2 113940429 113940429 A T PSD4 Silent p.P132P 0.04 TCGA-56-7222-01 2 125530554 125530554 G A CNTNAP5 Silent p.E903E 0.45 TCGA-56-7222-01 2 128712755 128712755 G A SAP130 Missense_Mutation p.P769S 0.19 deleterious_low_confidence(0.04) unknown(0) TCGA-56-7222-01 2 135744872 135744872 G T MAP3K19 Missense_Mutation p.Q524K 0.12 tolerated(0.74) benign(0.018) TCGA-56-7222-01 2 137852606 137852606 G T THSD7B Missense_Mutation p.A372S 0.10 tolerated(0.19) possibly_damaging(0.844) TCGA-56-7222-01 2 141773457 141773457 T A LRP1B Missense_Mutation p.E666D 0.17 possibly_damaging(0.523) TCGA-56-7222-01 2 141812827 141812827 G C LRP1B Silent p.V470V 0.19 TCGA-56-7222-01 2 152331593 152331593 A C RIF1 3'UTR 0.13 TCGA-56-7222-01 2 152346972 152346973 - G NEB Frame_Shift_Ins p.G8404Afs*3 0.40 TCGA-56-7222-01 2 155306935 155306935 C A GALNT13 Silent p.R515R 0.39 TCGA-56-7222-01 2 155711557 155711557 C T KCNJ3 Missense_Mutation p.P413L 0.18 tolerated_low_confidence(0.26) benign(0.122) TCGA-56-7222-01 2 158617453 158617453 C G ACVR1 Missense_Mutation p.R401S 0.63 deleterious(0.02) probably_damaging(1) TCGA-56-7222-01 2 159166115 159166116 - A CCDC148 Frame_Shift_Ins p.A314Cfs*14 0.36 TCGA-56-7222-01 2 160335221 160335221 C A BAZ2B Nonsense_Mutation p.G4* 0.18 TCGA-56-7222-01 2 1653354 1653354 G A PXDN Missense_Mutation p.S733L 0.21 deleterious(0.01) probably_damaging(0.952) TCGA-56-7222-01 2 166152492 166152492 C A SCN2A Missense_Mutation p.N53K 0.53 tolerated(0.09) possibly_damaging(0.615) TCGA-56-7222-01 2 166164445 166164445 G T SCN2A Silent p.V158V 0.47 TCGA-56-7222-01 2 166892646 166892646 G A SCN1A Missense_Mutation p.T1114I 0.12 tolerated(0.09) benign(0.321) TCGA-56-7222-01 2 166896071 166896071 C G SCN1A Silent p.L817L 0.29 TCGA-56-7222-01 2 168100200 168100200 T A XIRP2 Missense_Mutation p.D766E 0.23 probably_damaging(0.946) TCGA-56-7222-01 2 170003403 170003403 G T LRP2 Missense_Mutation p.D4219E 0.19 benign(0.002) TCGA-56-7222-01 2 175292531 175292531 G T SCRN3 Missense_Mutation p.D395Y 0.33 deleterious(0) benign(0.27) TCGA-56-7222-01 2 178977188 178977188 G T RBM45 5'UTR 0.15 TCGA-56-7222-01 2 179408324 179408324 A G TTN Missense_Mutation p.W32126R 0.58 TCGA-56-7222-01 2 179427794 179427794 C G TTN Missense_Mutation p.A27689P 0.10 TCGA-56-7222-01 2 179458128 179458128 G A TTN Missense_Mutation p.P19603S 0.18 TCGA-56-7222-01 2 179472290 179472290 C G TTN Missense_Mutation p.E17709Q 0.54 TCGA-56-7222-01 2 179594837 179594837 G A TTN Missense_Mutation p.A6097V 0.48 TCGA-56-7222-01 2 179701677 179701677 A G CCDC141 Silent p.G1423G 0.62 TCGA-56-7222-01 2 191077701 191077701 C T HIBCH Missense_Mutation p.R331Q 0.13 deleterious(0.01) possibly_damaging(0.684) TCGA-56-7222-01 2 191552016 191552016 C T NAB1 Missense_Mutation p.P450S 0.44 tolerated_low_confidence(1) benign(0.002) TCGA-56-7222-01 2 201822853 201822853 C A ORC2 5'UTR 0.15 TCGA-56-7222-01 2 203420432 203420432 G A BMPR2 Missense_Mutation p.D682N 0.13 deleterious(0.01) probably_damaging(0.983) TCGA-56-7222-01 2 206058039 206058039 A C PARD3B Missense_Mutation p.D650A 0.17 deleterious(0) probably_damaging(0.955) TCGA-56-7222-01 2 216296607 216296607 C G FN1 Missense_Mutation p.E166Q 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-56-7222-01 2 219507996 219507996 A T ZNF142 Missense_Mutation p.N1081K 0.46 tolerated(0.94) benign(0.002) TCGA-56-7222-01 2 224863034 224863034 G T SERPINE2 Silent p.I107I 0.47 TCGA-56-7222-01 2 225688292 225688292 G A DOCK10 Missense_Mutation p.H1037Y 0.41 tolerated(0.23) probably_damaging(0.995) TCGA-56-7222-01 2 233899309 233899309 C A NEU2 Missense_Mutation p.Q229K 0.44 tolerated(0.72) benign(0.012) TCGA-56-7222-01 2 238283473 238283473 G T COL6A3 Missense_Mutation p.N1087K 0.06 possibly_damaging(0.602) TCGA-56-7222-01 2 3392134 3392134 G T TRAPPC12 Missense_Mutation p.S247I 0.14 tolerated_low_confidence(0.1) benign(0.004) TCGA-56-7222-01 2 37121076 37121076 T C STRN Missense_Mutation p.N299S 0.12 tolerated(0.2) benign(0.001) TCGA-56-7222-01 2 68413619 68413619 G C PPP3R1 Missense_Mutation p.S149C 0.43 deleterious(0) possibly_damaging(0.768) TCGA-56-7222-01 2 69034499 69034499 C T ARHGAP25 Silent p.F187F 0.52 TCGA-56-7222-01 2 7035937 7035937 G T RSAD2 Missense_Mutation p.R317L 0.45 tolerated(0.07) benign(0.124) TCGA-56-7222-01 2 71730380 71730380 C G DYSF Silent p.V92V 0.11 TCGA-56-7222-01 2 73316510 73316510 C G RAB11FIP5 Intron 0.46 TCGA-56-7222-01 2 77746770 77746770 C T LRRTM4 Silent p.K75K 0.54 TCGA-56-7222-01 2 86315787 86315787 C A POLR1A Missense_Mutation p.G211V 0.21 tolerated(0.32) probably_damaging(0.965) TCGA-56-7222-01 2 90139121 90139121 T C IGKV1D-16 Missense_Mutation p.L6P 0.28 tolerated_low_confidence(1) benign(0) TCGA-56-7222-01 2 90139152 90139152 T G IGKV1D-16 Missense_Mutation p.C16W 0.25 tolerated(1) benign(0) TCGA-56-7222-01 2 90198903 90198903 T A IGKV1D-12 Missense_Mutation p.C22S 0.53 tolerated(0.05) benign(0.063) TCGA-56-7222-01 2 90229346 90229346 G C IGKV1D-42 Missense_Mutation p.A56P 0.70 tolerated(0.14) possibly_damaging(0.513) TCGA-56-7222-01 2 97851061 97851061 C T ANKRD36 Nonsense_Mutation p.Q650* 0.38 TCGA-56-7222-01 2 97851172 97851172 C G ANKRD36 Intron 0.34 TCGA-56-7222-01 2 99439524 99439524 G A KIAA1211L Silent p.T404T 0.68 TCGA-56-7222-01 3 101062588 101062588 C - SENP7 Frame_Shift_Del p.C683Ffs*13 0.26 TCGA-56-7222-01 3 112066402 112066402 C A CD200 Intron 0.24 TCGA-56-7222-01 3 112666768 112666768 G T CD200R1 Missense_Mutation p.A24E 0.30 tolerated(0.15) benign(0.231) TCGA-56-7222-01 3 113955618 113955618 C - ZNF80 Frame_Shift_Del p.E102Rfs*52 0.25 TCGA-56-7222-01 3 121575999 121575999 A G EAF2 Silent p.E160E 0.38 TCGA-56-7222-01 3 127642124 127642124 C G KBTBD12 Missense_Mutation p.L74V 0.49 deleterious(0) probably_damaging(0.999) TCGA-56-7222-01 3 133119265 133119265 G A BFSP2 Missense_Mutation p.G113D 0.30 tolerated(0.4) benign(0.175) TCGA-56-7222-01 3 134348512 134348512 G A KY Silent p.H96H 0.27 TCGA-56-7222-01 3 141724331 141724331 A G TFDP2 Silent p.I46I 0.15 TCGA-56-7222-01 3 146239691 146239691 C A PLSCR1 Missense_Mutation p.G169C 0.28 deleterious(0.02) possibly_damaging(0.637) TCGA-56-7222-01 3 151164455 151164455 A T IGSF10 Missense_Mutation p.L1105Q 0.44 tolerated(0.44) possibly_damaging(0.565) TCGA-56-7222-01 3 153847362 153847362 G T ARHGEF26 Splice_Site p.X375_splice 0.20 TCGA-56-7222-01 3 160679628 160679628 C T PPM1L Silent p.I168I 0.36 TCGA-56-7222-01 3 160804277 160804277 G A B3GALNT1 Missense_Mutation p.S89L 0.10 tolerated(0.28) benign(0.002) TCGA-56-7222-01 3 17202590 17202590 T C TBC1D5 Silent p.P773P 0.10 TCGA-56-7222-01 3 179605471 179605471 G T PEX5L Silent p.S100S 0.30 TCGA-56-7222-01 3 183209889 183209889 G T KLHL6 Silent p.G564G 0.06 TCGA-56-7222-01 3 183774699 183774699 C A HTR3C Silent p.A142A 0.05 TCGA-56-7222-01 3 184429624 184429624 A C MAGEF1 5'UTR 0.17 TCGA-56-7222-01 3 27173419 27173419 G A NEK10 Silent p.L1068L 0.46 TCGA-56-7222-01 3 38962578 38962578 G T SCN11A Missense_Mutation p.P294Q 0.38 tolerated(0.46) benign(0) TCGA-56-7222-01 3 42956524 42956524 T C ZNF662 Missense_Mutation p.L346P 0.60 deleterious(0) probably_damaging(0.992) TCGA-56-7222-01 3 46563089 46563089 A C LRRC2 Missense_Mutation p.I330R 0.52 tolerated(0.25) benign(0.003) TCGA-56-7222-01 3 48694416 48694416 G C CELSR3 Missense_Mutation p.L1372V 0.56 deleterious(0.01) probably_damaging(0.997) TCGA-56-7222-01 3 52097187 52097187 C T LINC00696 Silent p.E127E 0.21 TCGA-56-7222-01 3 55504069 55504069 T G WNT5A 3'UTR 0.39 TCGA-56-7222-01 3 62423859 62423859 A T CADPS Missense_Mutation p.Y1233N 0.40 deleterious(0) possibly_damaging(0.608) TCGA-56-7222-01 3 64133282 64133282 C A PRICKLE2 Missense_Mutation p.R295L 0.47 tolerated(0.18) benign(0.18) TCGA-56-7222-01 3 64547409 64547409 G A ADAMTS9 Nonsense_Mutation p.R1515* 0.44 TCGA-56-7222-01 3 73433348 73433348 C A PDZRN3 Missense_Mutation p.S790I 0.47 tolerated(0.06) benign(0.043) TCGA-56-7222-01 3 78685192 78685192 G C ROBO1 Nonsense_Mutation p.S1035* 0.13 TCGA-56-7222-01 3 97705669 97705669 C A GABRR3 Missense_Mutation p.R421L 0.45 tolerated(0.36) benign(0.008) TCGA-56-7222-01 4 114199650 114199650 A T ANK2 Missense_Mutation p.Y606F 0.55 probably_damaging(0.999) TCGA-56-7222-01 4 115858618 115858618 T A NDST4 Silent p.P421P 0.47 TCGA-56-7222-01 4 122782656 122782656 T C BBS7 Intron 0.69 TCGA-56-7222-01 4 134072933 134072933 G T PCDH10 Silent p.R546R 0.08 TCGA-56-7222-01 4 147861017 147861017 G T TTC29 Missense_Mutation p.R11S 0.56 tolerated(0.65) benign(0) TCGA-56-7222-01 4 162307096 162307096 T A FSTL5 Nonsense_Mutation p.K783* 0.44 TCGA-56-7222-01 4 164272162 164272162 A - NPY5R Frame_Shift_Del p.N247Tfs*8 0.26 TCGA-56-7222-01 4 166238989 166238989 G T KLHL2 Missense_Mutation p.V545F 0.42 tolerated(0.31) possibly_damaging(0.85) TCGA-56-7222-01 4 187538861 187538861 C A FAT1 Splice_Site p.X2960_splice 0.48 TCGA-56-7222-01 4 2065772 2065772 C A NAT8L Missense_Mutation p.P276Q 0.27 deleterious(0) probably_damaging(0.98) TCGA-56-7222-01 4 40434794 40434794 T C RBM47 Silent p.T472T 0.54 TCGA-56-7222-01 4 57840028 57840028 G A NOA1 Silent p.V435V 0.45 TCGA-56-7222-01 4 89607910 89607911 - C HERC3 Frame_Shift_Ins p.G846Rfs*23 0.33 TCGA-56-7222-01 5 127448530 127448530 A G SLC12A2 Missense_Mutation p.N261D 0.59 tolerated(0.2) probably_damaging(0.978) TCGA-56-7222-01 5 128369016 128369016 A C SLC27A6 3'UTR 0.58 TCGA-56-7222-01 5 135692701 135692701 G C TRPC7 Missense_Mutation p.I125M 0.06 tolerated(0.1) possibly_damaging(0.728) TCGA-56-7222-01 5 136974722 136974722 A G KLHL3 Missense_Mutation p.M380T 0.48 deleterious(0) probably_damaging(1) TCGA-56-7222-01 5 13769117 13769117 T - DNAH5 Frame_Shift_Del p.K3283Nfs*9 0.20 TCGA-56-7222-01 5 140741364 140741364 C A PCDHGB2 Missense_Mutation p.D554E 0.44 deleterious(0) probably_damaging(0.995) TCGA-56-7222-01 5 140751455 140751455 G A PCDHGB3 Silent p.P498P 0.17 TCGA-56-7222-01 5 145886642 145886642 G T TCERG1 Missense_Mutation p.D928Y 0.53 deleterious(0) unknown(0) TCGA-56-7222-01 5 149755683 149755683 C T TCOF1 Silent p.C644C 0.61 TCGA-56-7222-01 5 176018414 176018414 C G CDHR2 Silent p.P1221P 0.53 TCGA-56-7222-01 5 176694712 176694712 C T NSD1 Nonsense_Mutation p.R1766* 0.57 TCGA-56-7222-01 5 19483644 19483644 G C CDH18 Missense_Mutation p.L550V 0.52 tolerated(0.26) benign(0.007) TCGA-56-7222-01 5 195468 195468 G A LRRC14B Silent p.%3D 0.28 TCGA-56-7222-01 5 21842347 21842347 A G CDH12 Missense_Mutation p.L246P 0.27 tolerated(0.15) probably_damaging(0.98) TCGA-56-7222-01 5 26906074 26906074 G C CDH9 Missense_Mutation p.P269A 0.56 tolerated(0.12) benign(0.388) TCGA-56-7222-01 5 31983667 31983667 C T PDZD2 Missense_Mutation p.P295S 0.21 tolerated(0.2) possibly_damaging(0.622) TCGA-56-7222-01 5 32077611 32077611 C G PDZD2 Missense_Mutation p.T1194S 0.26 tolerated(0.08) benign(0.009) TCGA-56-7222-01 5 36036011 36036011 C T UGT3A2 Missense_Mutation p.R454Q 0.51 tolerated(0.11) probably_damaging(0.96) TCGA-56-7222-01 5 36168428 36168428 C A SKP2 Missense_Mutation p.Q184K 0.10 tolerated(0.13) benign(0.047) TCGA-56-7222-01 5 38418325 38418325 C A EGFLAM Missense_Mutation p.P551H 0.19 deleterious(0.01) probably_damaging(1) TCGA-56-7222-01 5 38418326 38418326 C A EGFLAM Silent p.P551P 0.19 TCGA-56-7222-01 5 45262237 45262237 G A HCN1 Missense_Mutation p.T820M 0.09 deleterious_low_confidence(0.01) benign(0.062) TCGA-56-7222-01 5 45267325 45267325 G T HCN1 Missense_Mutation p.T550N 0.17 deleterious(0) probably_damaging(0.998) TCGA-56-7222-01 5 63257544 63257544 C A HTR1A Translation_Start_Site p.M1? 0.60 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-56-7222-01 5 70672272 70672272 G C RP11-136K7.2 Intron 0.40 TCGA-56-7222-01 5 80409369 80409370 - T RASGRF2 Frame_Shift_Ins p.A703Cfs*9 0.33 TCGA-56-7222-01 5 86685301 86685301 C G RASA1 Nonsense_Mutation p.S1006* 0.48 TCGA-56-7222-01 5 89923408 89923408 A C GPR98 Silent p.I351I 0.55 TCGA-56-7222-01 5 90008151 90008151 G T GPR98 Missense_Mutation p.M3030I 0.64 benign(0.002) TCGA-56-7222-01 6 100988040 100988040 T A ASCC3 Missense_Mutation p.Q1925L 0.20 deleterious(0) benign(0.33) TCGA-56-7222-01 6 105607628 105607628 A G POPDC3 Silent p.P184P 0.24 TCGA-56-7222-01 6 105816899 105816899 C A PREP Missense_Mutation p.G199V 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-56-7222-01 6 117232204 117232204 A C RFX6 Missense_Mutation p.K260T 0.32 deleterious(0) probably_damaging(0.99) TCGA-56-7222-01 6 127797094 127797094 G A SOGA3 Missense_Mutation p.H693Y 0.26 deleterious(0.02) possibly_damaging(0.884) TCGA-56-7222-01 6 129470177 129470177 C T LAMA2 Silent p.C321C 0.34 TCGA-56-7222-01 6 129588287 129588287 A G LAMA2 Missense_Mutation p.I749V 0.29 deleterious(0.04) benign(0.012) TCGA-56-7222-01 6 131277286 131277286 T G EPB41L2 Missense_Mutation p.K114Q 0.33 tolerated(0.12) benign(0.003) TCGA-56-7222-01 6 139565804 139565804 C A TXLNB Silent p.L398L 0.33 TCGA-56-7222-01 6 152605217 152605217 C G SYNE1 Missense_Mutation p.A6035P 0.25 benign(0.079) TCGA-56-7222-01 6 24178609 24178609 C A DCDC2 Silent p.L425L 0.45 TCGA-56-7222-01 6 25776846 25776846 G A SLC17A4 Silent p.P337P 0.22 TCGA-56-7222-01 6 26021923 26021923 A T HIST1H4A Missense_Mutation p.K6M 0.31 deleterious_low_confidence(0) benign(0.031) TCGA-56-7222-01 6 27782457 27782457 C A HIST1H2AJ Missense_Mutation p.R21L 0.24 deleterious_low_confidence(0.01) unknown(0) TCGA-56-7222-01 6 28120909 28120909 A T ZKSCAN8 Missense_Mutation p.E284V 0.31 deleterious(0.02) benign(0.329) TCGA-56-7222-01 6 28194969 28194969 A G ZSCAN9 Missense_Mutation p.Q36R 0.07 tolerated(0.06) probably_damaging(0.968) TCGA-56-7222-01 6 30633391 30633391 C G DHX16 Silent p.L262L 0.10 TCGA-56-7222-01 6 32065780 32065780 C A TNXB Nonsense_Mutation p.G66* 0.26 TCGA-56-7222-01 6 33371291 33371291 G T KIFC1 Missense_Mutation p.V112F 0.28 deleterious(0.03) benign(0.27) TCGA-56-7222-01 6 35212557 35212557 T C SCUBE3 Silent p.F790F 0.25 TCGA-56-7222-01 6 38759356 38759356 T C DNAH8 Missense_Mutation p.I719T 0.33 probably_damaging(0.98) TCGA-56-7222-01 6 39874714 39874714 A G MOCS1 3'UTR 0.35 TCGA-56-7222-01 6 40399511 40399511 G T LRFN2 Silent p.R448R 0.31 TCGA-56-7222-01 6 41774450 41774451 - C USP49 Frame_Shift_Ins p.D91Gfs*34 0.31 TCGA-56-7222-01 6 44247986 44247993 GCTGGCGG - TCTE1 Frame_Shift_Del p.R478Gfs*17 0.32 TCGA-56-7222-01 6 51774261 51774261 G T PKHD1 Missense_Mutation p.H2168N 0.32 tolerated(0.54) benign(0.001) TCGA-56-7222-01 6 56765293 56765293 G A DST Nonsense_Mutation p.R115* 0.40 TCGA-56-7222-01 6 6002593 6002593 C T NRN1 Missense_Mutation p.V65M 0.35 deleterious(0.05) benign(0.006) TCGA-56-7222-01 6 64289175 64289175 G C PTP4A1 Missense_Mutation p.V115L 0.31 deleterious(0) benign(0.44) TCGA-56-7222-01 6 75875431 75875431 C A COL12A1 Missense_Mutation p.W925C 0.38 probably_damaging(0.999) TCGA-56-7222-01 6 82925919 82925919 G T IBTK Missense_Mutation p.S492Y 0.29 tolerated(0.62) benign(0.013) TCGA-56-7222-01 6 83898494 83898520 AACCAATTTTACACCATTGTCTTCCTT - PGM3 Splice_Site p.X97_splice 0.18 TCGA-56-7222-01 6 90381977 90381977 G A MDN1 Missense_Mutation p.S4579F 0.40 possibly_damaging(0.646) TCGA-56-7222-01 6 93955036 93955036 T A EPHA7 Silent p.S954S 0.29 TCGA-56-7222-01 7 100679544 100679544 C A MUC17 Missense_Mutation p.A1616D 0.34 unknown(0) TCGA-56-7222-01 7 100803888 100803888 G T AP1S1 3'UTR 0.40 TCGA-56-7222-01 7 106509790 106509790 C T PIK3CG Missense_Mutation p.S595L 0.33 deleterious(0.01) possibly_damaging(0.507) TCGA-56-7222-01 7 107738873 107738873 G T LAMB4 Missense_Mutation p.S445R 0.23 tolerated(0.17) benign(0.13) TCGA-56-7222-01 7 113517820 113517820 G - PPP1R3A Frame_Shift_Del p.W1110Gfs*22 0.21 TCGA-56-7222-01 7 117230411 117230411 G T CFTR Missense_Mutation p.V562L 0.32 tolerated(0.14) benign(0.007) TCGA-56-7222-01 7 126173888 126173888 G C GRM8 Missense_Mutation p.C516W 0.29 deleterious(0) probably_damaging(0.996) TCGA-56-7222-01 7 142231583 142231583 T A TRBV10-1 Missense_Mutation p.S112C 0.35 deleterious(0) probably_damaging(0.954) TCGA-56-7222-01 7 142560920 142560920 A G EPHB6 5'UTR 0.43 TCGA-56-7222-01 7 142573620 142573620 T A TRPV6 Missense_Mutation p.Q267L 0.04 tolerated(0.26) benign(0.013) TCGA-56-7222-01 7 149502515 149502515 G T SSPO RNA 0.43 TCGA-56-7222-01 7 150737604 150737604 C T ABCB8 Missense_Mutation p.A424V 0.38 deleterious(0) probably_damaging(0.984) TCGA-56-7222-01 7 151845871 151845871 C T KMT2C Missense_Mutation p.E4381K 0.28 possibly_damaging(0.614) TCGA-56-7222-01 7 151945254 151945254 T C KMT2C Silent p.Q755Q 0.07 TCGA-56-7222-01 7 25266591 25266591 A T NPVF Missense_Mutation p.W65R 0.24 deleterious(0.02) possibly_damaging(0.479) TCGA-56-7222-01 7 27147697 27147698 - G HOXA3 Frame_Shift_Ins p.H390Pfs*130 0.19 TCGA-56-7222-01 7 2959248 2959248 T A CARD11 Splice_Site p.X757_splice 0.23 TCGA-56-7222-01 7 37253017 37253017 G A ELMO1 Nonsense_Mutation p.Q293* 0.31 TCGA-56-7222-01 7 37253018 37253018 G T ELMO1 Missense_Mutation p.H292Q 0.32 deleterious(0) probably_damaging(0.997) TCGA-56-7222-01 7 37896930 37896930 G C NME8 Missense_Mutation p.V85L 0.24 tolerated(0.16) benign(0.364) TCGA-56-7222-01 7 37901701 37901701 C T NME8 Silent p.I114I 0.39 TCGA-56-7222-01 7 43485085 43485085 G T HECW1 Nonsense_Mutation p.E772* 0.36 TCGA-56-7222-01 7 45006341 45006341 G T MYO1G Missense_Mutation p.L627M 0.42 deleterious(0) probably_damaging(0.999) TCGA-56-7222-01 7 4822988 4822988 G - AP5Z1 Frame_Shift_Del p.L137Yfs*82 0.27 TCGA-56-7222-01 7 550495 550495 G T PDGFA Missense_Mutation p.T135K 0.20 deleterious(0.03) possibly_damaging(0.787) TCGA-56-7222-01 7 55248923 55248923 C G EGFR Intron 0.37 TCGA-56-7222-01 7 76069878 76069878 C T ZP3 Missense_Mutation p.P337L 0.22 tolerated(0.16) benign(0.003) TCGA-56-7222-01 7 81641478 81641478 C G CACNA2D1 Missense_Mutation p.D452H 0.24 deleterious(0) probably_damaging(1) TCGA-56-7222-01 7 99036768 99036768 G A CPSF4 Silent p.Q21Q 0.55 TCGA-56-7222-01 8 110535065 110535065 A G PKHD1L1 Silent p.A4092A 0.42 TCGA-56-7222-01 8 110587863 110587863 C A SYBU Missense_Mutation p.G422W 0.28 deleterious(0) possibly_damaging(0.802) TCGA-56-7222-01 8 120942069 120942069 A G DEPTOR Missense_Mutation p.K106E 0.19 tolerated(0.65) benign(0.158) TCGA-56-7222-01 8 126067905 126067905 C A KIAA0196 Missense_Mutation p.K675N 0.21 deleterious(0) possibly_damaging(0.805) TCGA-56-7222-01 8 140630957 140630957 A G KCNK9 Silent p.F223F 0.14 TCGA-56-7222-01 8 144522412 144522412 C A ZC3H3 Missense_Mutation p.A872S 0.29 tolerated(1) benign(0.011) TCGA-56-7222-01 8 1497745 1497745 G A DLGAP2 Missense_Mutation p.V296I 0.27 deleterious(0.01) probably_damaging(0.934) TCGA-56-7222-01 8 52321681 52321681 C T PXDNL Missense_Mutation p.V835I 0.39 tolerated(0.12) benign(0.089) TCGA-56-7222-01 8 72229853 72229853 G A EYA1 Missense_Mutation p.L164F 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-56-7222-01 8 73951445 73951445 A G TERF1 Silent p.R378R 0.30 TCGA-56-7222-01 8 77768460 77768460 C A ZFHX4 Silent p.L3101L 0.38 TCGA-56-7222-01 8 86027354 86027354 C G LRRCC1 Silent p.L188L 0.33 TCGA-56-7222-01 8 89128761 89128761 A C MMP16 Missense_Mutation p.L353R 0.20 deleterious(0) probably_damaging(1) TCGA-56-7222-01 8 98943689 98943689 C T MATN2 Silent p.F217F 0.22 TCGA-56-7222-01 9 104432735 104432735 C A GRIN3A Missense_Mutation p.L653F 0.20 deleterious(0.04) probably_damaging(1) TCGA-56-7222-01 9 114206728 114206728 G C KIAA0368 Missense_Mutation p.P245R 0.27 deleterious(0) probably_damaging(0.983) TCGA-56-7222-01 9 115931759 115931759 T A FKBP15 Missense_Mutation p.K1077M 0.24 tolerated_low_confidence(0.07) benign(0.208) TCGA-56-7222-01 9 119124952 119124952 C T PAPPA Nonsense_Mutation p.Q1477* 0.24 TCGA-56-7222-01 9 121976218 121976218 A - BRINP1 Frame_Shift_Del p.Y301Ifs*14 0.28 TCGA-56-7222-01 9 125273254 125273254 C A OR1J2 Silent p.P58P 0.48 TCGA-56-7222-01 9 125273255 125273255 A T OR1J2 Missense_Mutation p.M59L 0.47 deleterious_low_confidence(0) benign(0.391) TCGA-56-7222-01 9 136131183 136131183 C A RP11-430N14.4 5'Flank 0.14 TCGA-56-7222-01 9 2718506 2718506 C T KCNV2 Missense_Mutation p.S256L 0.53 deleterious(0.01) probably_damaging(0.98) TCGA-56-7222-01 9 33385424 33385424 G T AQP7 Intron 0.44 TCGA-56-7222-01 9 87635206 87635206 G A NTRK2 Nonsense_Mutation p.W753* 0.63 TCGA-56-7222-01 9 90502077 90502077 C A SPATA31E1 Missense_Mutation p.P892H 0.30 deleterious(0.04) benign(0.134) TCGA-56-7222-01 9 93375522 93375522 G T DIRAS2 Nonsense_Mutation p.C196* 0.06 TCGA-56-7222-01 9 95142113 95142113 A T CENPP Missense_Mutation p.Y179F 0.33 tolerated(0.2) benign(0.418) TCGA-56-7222-01 X 103432960 103432960 T G FAM199X Missense_Mutation p.S323R 0.30 tolerated(0.11) possibly_damaging(0.474) TCGA-56-7222-01 X 112021824 112021824 C T AMOT Missense_Mutation p.D1076N 0.59 probably_damaging(0.986) TCGA-56-7222-01 X 118723852 118723852 T C NKRF Silent p.K527K 0.72 TCGA-56-7222-01 X 119293102 119293102 C A RHOXF2 Silent p.G87G 0.60 TCGA-56-7222-01 X 140786609 140786609 T C SPANXD 5'UTR 0.65 TCGA-56-7222-01 X 151821042 151821042 C T GABRQ Silent p.L399L 0.68 TCGA-56-7222-01 X 153050571 153050571 A C SRPK3 Missense_Mutation p.I488L 0.09 tolerated(0.24) benign(0.127) TCGA-56-7222-01 X 1719909 1719909 G C AKAP17A Missense_Mutation p.E504Q 0.32 tolerated_low_confidence(0.08) unknown(0) TCGA-56-7222-01 X 19478202 19478202 C T MAP3K15 Silent p.L263L 0.70 TCGA-56-7222-01 X 26157252 26157252 G C MAGEB18 Missense_Mutation p.Q50H 0.07 tolerated(0.06) possibly_damaging(0.681) TCGA-56-7222-01 X 32466632 32466632 G T DMD Missense_Mutation p.L1243I 0.39 probably_damaging(0.91) TCGA-56-7222-01 X 50377369 50377369 A G SHROOM4 Silent p.G568G 0.54 TCGA-56-7222-01 X 591664 591664 C A SHOX Missense_Mutation p.S11Y 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-56-7222-01 X 6451871 6451871 T A VCX3A Missense_Mutation p.E159V 0.43 tolerated(0.28) unknown(0) TCGA-56-7222-01 X 65486382 65486382 T A HEPH Silent p.I1169I 0.64 TCGA-56-7222-01 X 69421740 69421740 G T DGAT2L6 Missense_Mutation p.G158V 0.73 deleterious(0) probably_damaging(1) TCGA-56-7222-01 X 73045040 73045040 G C XIST RNA 0.58 TCGA-56-7222-01 X 91873932 91873932 C A PCDH11X Missense_Mutation p.P1346H 0.55 deleterious_low_confidence(0) possibly_damaging(0.868) TCGA-56-7223-01 10 102057295 102057295 C T PKD2L1 Missense_Mutation p.G267E 0.87 deleterious(0) probably_damaging(1) TCGA-56-7223-01 10 116056809 116056809 A G AFAP1L2 Silent p.S786S 0.39 TCGA-56-7223-01 10 45602446 45602446 T A RSU1P2 RNA 0.95 TCGA-56-7223-01 10 45938513 45938513 G A ALOX5 Missense_Mutation p.V434M 0.44 deleterious(0.01) probably_damaging(0.928) TCGA-56-7223-01 10 74658747 74658747 T C OIT3 Silent p.Y129Y 0.88 TCGA-56-7223-01 10 75675012 75675012 A G PLAU Missense_Mutation p.D325G 0.84 tolerated(0.07) benign(0.284) TCGA-56-7223-01 10 7608347 7608347 T C ITIH5 Missense_Mutation p.I725V 0.54 tolerated(0.08) possibly_damaging(0.474) TCGA-56-7223-01 10 76867829 76867829 G T DUSP13 Intron 0.84 TCGA-56-7223-01 10 99625436 99625436 T G CRTAC1 Missense_Mutation p.T619P 0.36 tolerated_low_confidence(0.21) benign(0.021) TCGA-56-7223-01 11 104971346 104971346 A C CARD17 Silent p.A56A 0.88 TCGA-56-7223-01 11 105961323 105961323 G C AASDHPPT Missense_Mutation p.R150T 0.86 deleterious(0) probably_damaging(0.998) TCGA-56-7223-01 11 117062604 117062604 C T SIDT2 Silent p.F582F 0.16 TCGA-56-7223-01 11 1265821 1265821 C G MUC5B Missense_Mutation p.P2571A 0.24 unknown(0) TCGA-56-7223-01 11 1269017 1269017 G T MUC5B Missense_Mutation p.C3636F 0.33 unknown(0) TCGA-56-7223-01 11 133791031 133791031 G A IGSF9B Silent p.A863A 0.25 TCGA-56-7223-01 11 134073086 134073086 C G NCAPD3 Silent p.T492T 0.55 TCGA-56-7223-01 11 18101936 18101936 A G SAAL1 3'UTR 0.26 TCGA-56-7223-01 11 18596961 18596961 T A UEVLD Splice_Site p.X43_splice 0.19 TCGA-56-7223-01 11 26563578 26563578 G T ANO3 Nonsense_Mutation p.G373* 0.32 TCGA-56-7223-01 11 3114215 3114215 C G OSBPL5 Missense_Mutation p.A672P 0.19 deleterious(0.03) possibly_damaging(0.555) TCGA-56-7223-01 11 40136643 40136643 T C LRRC4C Silent p.K400K 0.29 TCGA-56-7223-01 11 45226269 45226269 A G PRDM11 Missense_Mutation p.D165G 0.61 tolerated(0.06) probably_damaging(0.977) TCGA-56-7223-01 11 45274150 45274150 T - SYT13 Frame_Shift_Del p.E223Gfs*17 0.21 TCGA-56-7223-01 11 4673791 4673791 C A OR51E1 Missense_Mutation p.A12D 0.24 tolerated(0.05) benign(0.394) TCGA-56-7223-01 11 4928995 4928995 C T OR51A7 Silent p.Y132Y 0.65 TCGA-56-7223-01 11 50003205 50003205 G A OR4C12 Missense_Mutation p.P278L 0.88 deleterious_low_confidence(0) probably_damaging(1) TCGA-56-7223-01 11 56127782 56127782 T C OR8J1 Silent p.C20C 0.86 TCGA-56-7223-01 11 56230241 56230241 G C OR5M9 Missense_Mutation p.L213V 0.75 tolerated(0.08) benign(0.084) TCGA-56-7223-01 11 57564301 57564301 G A CTNND1 Missense_Mutation p.V265I 0.89 tolerated(0.43) benign(0.01) TCGA-56-7223-01 11 58275328 58275328 C G OR5B21 Missense_Mutation p.R84P 0.96 deleterious_low_confidence(0) benign(0) TCGA-56-7223-01 11 58979318 58979318 A T MPEG1 Missense_Mutation p.Y341N 0.88 deleterious(0) probably_damaging(1) TCGA-56-7223-01 11 60075744 60075744 G A MS4A4A 3'UTR 0.79 TCGA-56-7223-01 11 6244426 6244426 G A FAM160A2 Nonsense_Mutation p.R274* 0.30 TCGA-56-7223-01 11 63176291 63176291 T G SLC22A9 Missense_Mutation p.L514R 0.88 tolerated(0.05) benign(0.046) TCGA-56-7223-01 11 65314317 65314317 T C LTBP3 Missense_Mutation p.I728V 0.86 tolerated(1) benign(0.175) TCGA-56-7223-01 11 74873698 74873698 A G SLCO2B1 Splice_Site p.X6_splice 0.38 TCGA-56-7223-01 11 7721842 7721842 C A OVCH2 Splice_Site p.X301_splice 0.57 TCGA-56-7223-01 12 120568524 120568524 C A GCN1L1 Missense_Mutation p.G2533C 0.42 probably_damaging(1) TCGA-56-7223-01 12 120568525 120568525 C G GCN1L1 Missense_Mutation p.M2532I 0.41 benign(0.001) TCGA-56-7223-01 12 122691012 122691012 C T B3GNT4 Missense_Mutation p.R72C 0.40 deleterious(0.01) benign(0.002) TCGA-56-7223-01 12 132195861 132195861 G T SFSWAP Silent p.G29G 0.85 TCGA-56-7223-01 12 22035781 22035781 C A ABCC9 Missense_Mutation p.Q646H 0.53 tolerated(0.16) benign(0.003) TCGA-56-7223-01 12 2927326 2927326 C A ITFG2 Missense_Mutation p.P97T 0.22 tolerated(0.15) benign(0.005) TCGA-56-7223-01 12 49169177 49169177 C G ADCY6 Missense_Mutation p.R630P 0.61 deleterious(0.04) possibly_damaging(0.482) TCGA-56-7223-01 12 52862794 52862794 G A KRT6C 3'UTR 0.58 TCGA-56-7223-01 12 56090778 56090778 G T ITGA7 Missense_Mutation p.R552S 0.53 tolerated(0.06) possibly_damaging(0.712) TCGA-56-7223-01 12 72388229 72388229 C A TPH2 Missense_Mutation p.H318N 0.34 deleterious(0) probably_damaging(0.969) TCGA-56-7223-01 12 78579470 78579470 C T NAV3 Nonsense_Mutation p.R1906* 0.43 TCGA-56-7223-01 12 8386943 8386943 C A RP11-266K4.9 5'Flank 0.24 TCGA-56-7223-01 13 103338667 103338667 A G METTL21C Missense_Mutation p.L170P 0.61 deleterious(0) probably_damaging(1) TCGA-56-7223-01 13 111164423 111164423 G A COL4A2 Nonsense_Mutation p.W1675* 0.32 TCGA-56-7223-01 13 114472129 114472129 A G TMEM255B Missense_Mutation p.Q83R 0.35 deleterious(0.02) benign(0.2) TCGA-56-7223-01 13 20000591 20000591 C A TPTE2 Missense_Mutation p.D457Y 0.40 deleterious(0) probably_damaging(1) TCGA-56-7223-01 13 23942538 23942538 C A SACS Intron 0.28 TCGA-56-7223-01 13 25266599 25266599 C A ATP12A Silent p.A373A 0.14 TCGA-56-7223-01 13 38229368 38229368 A G TRPC4 Silent p.L581L 0.52 TCGA-56-7223-01 13 39263483 39263483 G T FREM2 Missense_Mutation p.D668Y 0.46 deleterious(0) probably_damaging(0.99) TCGA-56-7223-01 13 40254111 40254111 G A COG6 Splice_Site p.X208_splice 0.33 TCGA-56-7223-01 13 47469920 47469920 T C HTR2A Missense_Mutation p.D41G 0.45 tolerated_low_confidence(0.5) benign(0.022) TCGA-56-7223-01 13 64321028 64321028 A C AL445989.1 Missense_Mutation p.Y32S 0.39 unknown(0) TCGA-56-7223-01 13 70681842 70681842 C A KLHL1 5'UTR 0.42 TCGA-56-7223-01 13 88330294 88330294 C A SLITRK5 Missense_Mutation p.P884H 0.26 tolerated(0.77) benign(0.414) TCGA-56-7223-01 14 100182173 100182173 C A CYP46A1 Silent p.L240L 0.29 TCGA-56-7223-01 14 100615992 100615992 C T DEGS2 Silent p.A46A 0.21 TCGA-56-7223-01 14 104618605 104618605 G T KIF26A Missense_Mutation p.G181V 0.33 deleterious(0.01) possibly_damaging(0.454) TCGA-56-7223-01 14 104642576 104642576 G A KIF26A Missense_Mutation p.G1151S 0.33 tolerated(1) benign(0.014) TCGA-56-7223-01 14 105414530 105414530 G A AHNAK2 Nonsense_Mutation p.Q2420* 0.31 TCGA-56-7223-01 14 106354426 106354426 C G IGHD2-21 Missense_Mutation p.W4S 0.31 unknown(0) TCGA-56-7223-01 14 106725337 106725337 C T IGHV3-23 Missense_Mutation p.G72D 0.23 tolerated_low_confidence(0.58) benign(0.002) TCGA-56-7223-01 14 29238031 29238031 A G FOXG1 3'UTR 0.69 TCGA-56-7223-01 14 58060731 58060731 G A SLC35F4 Missense_Mutation p.A108V 0.20 deleterious(0.02) benign(0.211) TCGA-56-7223-01 14 65268114 65268114 C A SPTB Missense_Mutation p.D218Y 0.59 deleterious(0) probably_damaging(0.993) TCGA-56-7223-01 14 96848831 96848831 G C GSKIP Missense_Mutation p.A83P 0.80 tolerated(0.06) possibly_damaging(0.716) TCGA-56-7223-01 15 20644030 20644030 C A HERC2P3 RNA 0.21 TCGA-56-7223-01 15 23931336 23931336 C A NDN 3'UTR 0.24 TCGA-56-7223-01 15 24922602 24922602 C T NPAP1 Silent p.L530L 0.24 TCGA-56-7223-01 15 25326348 25326348 G A SNORD116-12 3'Flank 0.12 TCGA-56-7223-01 15 25438321 25438321 C A SNORD115-11 3'Flank 0.32 TCGA-56-7223-01 15 25438322 25438322 C A SNORD115-11 3'Flank 0.31 TCGA-56-7223-01 15 25456784 25456784 G A SNORD115-22 3'Flank 0.22 TCGA-56-7223-01 15 27182465 27182465 C A GABRA5 Missense_Mutation p.S238R 0.69 tolerated(0.39) benign(0.006) TCGA-56-7223-01 15 40656723 40656723 C A DISP2 Missense_Mutation p.P194H 0.21 deleterious(0) probably_damaging(0.994) TCGA-56-7223-01 15 40863943 40863943 C T RPUSD2 Silent p.F249F 0.66 TCGA-56-7223-01 15 66249994 66249994 G C MEGF11 Missense_Mutation p.S393C 0.19 deleterious(0) possibly_damaging(0.796) TCGA-56-7223-01 15 78582390 78582390 C T WDR61 Missense_Mutation p.G124E 0.88 deleterious(0) probably_damaging(0.998) TCGA-56-7223-01 15 79291093 79291093 C T RASGRF1 Missense_Mutation p.V957M 0.85 deleterious(0) probably_damaging(0.987) TCGA-56-7223-01 15 79750527 79750527 G T KIAA1024 Missense_Mutation p.D680Y 0.33 deleterious(0) possibly_damaging(0.779) TCGA-56-7223-01 16 1394802 1394802 C T BAIAP3 Silent p.I622I 0.22 TCGA-56-7223-01 16 1797137 1797137 C A MAPK8IP3 Silent p.A284A 0.25 TCGA-56-7223-01 16 19514667 19514667 A G GDE1 3'UTR 0.50 TCGA-56-7223-01 16 20352626 20352626 A C UMOD Missense_Mutation p.M455R 0.61 tolerated(0.47) benign(0.178) TCGA-56-7223-01 16 27802768 27802768 C T GSG1L Missense_Mutation p.D307N 0.32 tolerated_low_confidence(0.08) benign(0.354) TCGA-56-7223-01 16 47117033 47117033 T C NETO2 3'UTR 0.21 TCGA-56-7223-01 16 55907769 55907769 C A CES5A Missense_Mutation p.R114L 0.55 deleterious(0.01) benign(0.093) TCGA-56-7223-01 16 69381802 69381802 G T TMED6 Missense_Mutation p.H126Q 0.31 tolerated(0.18) benign(0.018) TCGA-56-7223-01 16 81053788 81053788 G C CENPN Missense_Mutation p.Q146H 0.67 tolerated(0.3) probably_damaging(1) TCGA-56-7223-01 16 81946203 81946203 T G PLCG2 Missense_Mutation p.W646G 0.59 deleterious(0) probably_damaging(0.923) TCGA-56-7223-01 16 85667659 85667659 G T GSE1 Silent p.A49A 0.24 TCGA-56-7223-01 16 89603349 89603349 G T SPG7 Intron 0.27 TCGA-56-7223-01 16 89971463 89971463 A T TCF25 Silent p.A529A 0.43 TCGA-56-7223-01 16 90141873 90141873 C T PRDM7 Missense_Mutation p.A27T 0.24 deleterious(0.04) possibly_damaging(0.864) TCGA-56-7223-01 16 9857524 9857524 C A GRIN2A Missense_Mutation p.D1293Y 0.56 deleterious(0) probably_damaging(0.998) TCGA-56-7223-01 17 11554463 11554463 G T DNAH9 Missense_Mutation p.M725I 0.88 benign(0.001) TCGA-56-7223-01 17 2310493 2310493 G A AC006435.1 Silent p.C93C 1.00 TCGA-56-7223-01 17 28575968 28575968 G A BLMH 3'UTR 0.22 TCGA-56-7223-01 17 34235806 34235806 T C AC015849.16 RNA 0.51 TCGA-56-7223-01 17 35748789 35748789 T C C17orf78 3'UTR 0.46 TCGA-56-7223-01 17 40094946 40094946 G C TTC25 RNA 0.49 TCGA-56-7223-01 17 46670571 46670571 C A HOXB5 Missense_Mutation p.Q158H 0.38 tolerated(0.32) benign(0.187) TCGA-56-7223-01 17 47882799 47882799 G A KAT7 Missense_Mutation p.E219K 0.19 deleterious(0.03) probably_damaging(0.917) TCGA-56-7223-01 17 48051084 48051084 A T DLX4 Missense_Mutation p.N167I 0.21 deleterious(0) probably_damaging(0.99) TCGA-56-7223-01 17 48674209 48674209 G T CACNA1G Silent p.A1061A 0.47 TCGA-56-7223-01 17 61903647 61903647 T G FTSJ3 Missense_Mutation p.K64T 0.18 deleterious(0.01) probably_damaging(0.926) TCGA-56-7223-01 17 62034869 62034869 A G SCN4A Missense_Mutation p.F677L 0.44 deleterious(0.02) benign(0.077) TCGA-56-7223-01 17 7189070 7189070 G A SLC2A4 Missense_Mutation p.G390D 0.05 tolerated(0.21) benign(0.111) TCGA-56-7223-01 17 72322411 72322411 G A KIF19 5'UTR 0.49 TCGA-56-7223-01 17 7530733 7530733 C G SAT2 Splice_Site p.X23_splice 0.88 TCGA-56-7223-01 17 7578403 7578403 C A TP53 Missense_Mutation p.C176F 0.90 deleterious(0) probably_damaging(0.993) TCGA-56-7223-01 17 7644300 7644300 G T DNAH2 Missense_Mutation p.R560I 0.79 possibly_damaging(0.864) TCGA-56-7223-01 17 77709135 77709135 G A ENPP7 Silent p.A231A 0.52 TCGA-56-7223-01 17 78449917 78449917 C A NPTX1 Missense_Mutation p.Q110H 0.24 tolerated(0.23) benign(0.264) TCGA-56-7223-01 18 18650492 18650492 C T ROCK1 Splice_Site p.X59_splice 0.82 TCGA-56-7223-01 18 22806968 22806968 C G ZNF521 Missense_Mutation p.S305T 0.23 tolerated(0.43) benign(0.012) TCGA-56-7223-01 18 8244190 8244190 A T PTPRM Missense_Mutation p.H812L 0.41 deleterious(0) possibly_damaging(0.541) TCGA-56-7223-01 19 11107202 11107202 C A SMARCA4 Silent p.A598A 0.90 TCGA-56-7223-01 19 19154858 19154858 A G ARMC6 Missense_Mutation p.Q85R 0.89 tolerated(0.35) benign(0.019) TCGA-56-7223-01 19 19656100 19656100 G A CILP2 Missense_Mutation p.E916K 0.50 deleterious(0) probably_damaging(0.999) TCGA-56-7223-01 19 37118428 37118428 G T ZNF382 Missense_Mutation p.K543N 0.57 tolerated(0.08) possibly_damaging(0.632) TCGA-56-7223-01 19 422299 422299 G T SHC2 Missense_Mutation p.H489Q 0.95 tolerated(0.4) probably_damaging(0.993) TCGA-56-7223-01 19 46997655 46997655 A G PNMAL2 Silent p.V356V 0.92 TCGA-56-7223-01 19 50393618 50393618 C T IL4I1 Missense_Mutation p.R360H 1.00 tolerated(0.57) benign(0.052) TCGA-56-7223-01 19 50947063 50947063 C T MYBPC2 Nonsense_Mutation p.Q375* 0.22 TCGA-56-7223-01 19 52568770 52568770 C T ZNF841 Missense_Mutation p.G789R 0.86 deleterious(0.03) probably_damaging(0.937) TCGA-56-7223-01 19 55401211 55401211 A C FCAR Silent p.T282T 0.30 TCGA-56-7223-01 19 57176314 57176314 C A ZNF835 Missense_Mutation p.A85S 0.27 tolerated(0.57) benign(0.049) TCGA-56-7223-01 19 8808128 8808128 C T ACTL9 Silent p.P308P 0.40 TCGA-56-7223-01 19 9068699 9068699 A G MUC16 Silent p.V6249V 0.91 TCGA-56-7223-01 1 12318127 12318127 G T VPS13D Missense_Mutation p.K359N 0.34 benign(0.042) TCGA-56-7223-01 1 144918833 144918833 C A PDE4DIP Missense_Mutation p.Q451H 0.23 deleterious(0) probably_damaging(0.93) TCGA-56-7223-01 1 144918834 144918834 T G PDE4DIP Missense_Mutation p.Q451P 0.23 deleterious(0) possibly_damaging(0.907) TCGA-56-7223-01 1 145112401 145112401 C T SEC22B RNA 0.17 TCGA-56-7223-01 1 148561069 148561069 C A NBPF15 5'UTR 0.20 TCGA-56-7223-01 1 152733418 152733418 C A KPRP Missense_Mutation p.P452T 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.803) TCGA-56-7223-01 1 156626834 156626834 T A BCAN Missense_Mutation p.Y719N 0.44 tolerated(0.16) benign(0.309) TCGA-56-7223-01 1 156756576 156756576 T C PRCC Silent p.P231P 0.39 TCGA-56-7223-01 1 158389783 158389783 A G OR10K2 Silent p.L292L 0.28 TCGA-56-7223-01 1 158389784 158389784 G A OR10K2 Silent p.S291S 0.28 TCGA-56-7223-01 1 166888610 166888610 C A ILDR2 Missense_Mutation p.R634S 0.43 deleterious(0) probably_damaging(0.996) TCGA-56-7223-01 1 176085802 176085802 G - RFWD2 Frame_Shift_Del p.T329Qfs*25 0.27 TCGA-56-7223-01 1 176564681 176564681 C A PAPPA2 Silent p.P647P 0.22 TCGA-56-7223-01 1 178423638 178423638 G T RASAL2 Missense_Mutation p.W689L 0.36 deleterious(0.01) probably_damaging(0.995) TCGA-56-7223-01 1 180064968 180064968 G A CEP350 Missense_Mutation p.G2941D 0.59 probably_damaging(1) TCGA-56-7223-01 1 184763992 184763992 T C FAM129A 3'UTR 0.69 TCGA-56-7223-01 1 185143878 185143878 A G SWT1 Missense_Mutation p.K200R 0.54 tolerated(0.15) benign(0.03) TCGA-56-7223-01 1 192150575 192150575 A G RGS18 Missense_Mutation p.D146G 0.32 deleterious(0.01) possibly_damaging(0.891) TCGA-56-7223-01 1 204379155 204379155 G A PPP1R15B Missense_Mutation p.S462L 0.46 tolerated(0.1) benign(0.422) TCGA-56-7223-01 1 207646449 207646449 A T CR2 Missense_Mutation p.T635S 0.19 tolerated(0.11) benign(0.331) TCGA-56-7223-01 1 215345472 215345472 A G KCNK2 Missense_Mutation p.I257V 0.44 tolerated(0.12) benign(0.175) TCGA-56-7223-01 1 220142281 220142281 G A EPRS Missense_Mutation p.P1469L 0.49 tolerated(0.08) benign(0.223) TCGA-56-7223-01 1 221057598 221057598 A C HLX Missense_Mutation p.Q340P 0.32 deleterious(0.01) possibly_damaging(0.884) TCGA-56-7223-01 1 228527662 228527662 C T OBSCN Nonsense_Mutation p.Q6716* 0.10 TCGA-56-7223-01 1 22902898 22902898 C T EPHA8 Silent p.G116G 0.91 TCGA-56-7223-01 1 237057752 237057752 T C MTR Silent p.F1100F 0.45 TCGA-56-7223-01 1 240071104 240071104 G T CHRM3 Missense_Mutation p.G118V 0.09 deleterious(0) probably_damaging(1) TCGA-56-7223-01 1 244816612 244816612 G C DESI2 5'UTR 0.47 TCGA-56-7223-01 1 247654495 247654495 A G OR2W5 RNA 0.26 TCGA-56-7223-01 1 248224223 248224223 G T OR2L3 Missense_Mutation p.M80I 0.42 deleterious(0.03) probably_damaging(0.945) TCGA-56-7223-01 1 248308536 248308536 T A OR2M5 Missense_Mutation p.F29L 0.55 tolerated(0.1) benign(0.019) TCGA-56-7223-01 1 248343390 248343390 T A OR2M2 Missense_Mutation p.F35I 0.49 deleterious(0) possibly_damaging(0.693) TCGA-56-7223-01 1 248756794 248756794 G T OR2T10 Silent p.I92I 0.59 TCGA-56-7223-01 1 26517205 26517205 G C CATSPER4 Missense_Mutation p.M29I 0.89 tolerated_low_confidence(0.24) benign(0.007) TCGA-56-7223-01 1 27100353 27100354 CA T ARID1A Frame_Shift_Del p.S1356Afs*125 0.30 TCGA-56-7223-01 1 34383816 34383816 C A CSMD2 Missense_Mutation p.D227Y 0.91 deleterious(0) probably_damaging(0.996) TCGA-56-7223-01 1 35827218 35827218 A G ZMYM4 Splice_Site p.X224_splice 0.28 TCGA-56-7223-01 1 40208910 40208910 G A PPIE Missense_Mutation p.R75H 0.36 deleterious(0) possibly_damaging(0.885) TCGA-56-7223-01 1 43213426 43213427 AA - LEPRE1 Frame_Shift_Del p.F627Lfs*4 0.53 TCGA-56-7223-01 1 57395180 57395180 G A C8B Missense_Mutation p.S558F 0.78 deleterious(0) probably_damaging(0.99) TCGA-56-7223-01 1 72163700 72163700 C - NEGR1 Frame_Shift_Del p.V220Lfs*16 0.44 TCGA-56-7223-01 1 74819697 74819697 G A FPGT-TNNI3K Missense_Mutation p.R468H 0.38 tolerated(0.18) probably_damaging(0.997) TCGA-56-7223-01 1 75171883 75171883 T C CRYZ 3'UTR 0.70 TCGA-56-7223-01 1 94018025 94018025 G T FNBP1L 3'UTR 0.40 TCGA-56-7223-01 20 17417525 17417525 C A PCSK2 Missense_Mutation p.N294K 0.29 tolerated(0.24) probably_damaging(0.999) TCGA-56-7223-01 20 17943410 17943410 G A SNX5 Intron 0.62 TCGA-56-7223-01 20 31023450 31023450 G C ASXL1 Missense_Mutation p.D979H 0.24 tolerated_low_confidence(0.06) possibly_damaging(0.472) TCGA-56-7223-01 20 42891922 42891922 G A GDAP1L1 Silent p.E200E 0.22 TCGA-56-7223-01 20 43264929 43264929 C T ADA Missense_Mutation p.V12M 0.50 deleterious(0) probably_damaging(0.996) TCGA-56-7223-01 20 47731362 47731362 G T STAU1 3'UTR 0.40 TCGA-56-7223-01 20 5081412 5081412 C A TMEM230 3'UTR 0.20 TCGA-56-7223-01 20 57769090 57769090 G C ZNF831 Missense_Mutation p.E1006Q 0.34 deleterious(0.01) possibly_damaging(0.738) TCGA-56-7223-01 20 62326513 62326513 G C RTEL1 Silent p.P1170P 0.32 TCGA-56-7223-01 20 62407298 62407298 T A ZBTB46 Missense_Mutation p.T319S 0.45 tolerated(0.37) benign(0.006) TCGA-56-7223-01 21 31692327 31692327 T C KRTAP26-1 Silent p.G9G 0.94 TCGA-56-7223-01 21 41300977 41300977 G T PCP4 Missense_Mutation p.V44L 0.86 tolerated(0.35) possibly_damaging(0.866) TCGA-56-7223-01 21 42848541 42848541 G A TMPRSS2 Silent p.A267A 0.86 TCGA-56-7223-01 22 17071857 17071857 T C CCT8L2 Silent p.T528T 0.62 TCGA-56-7223-01 22 20459532 20459532 C T RIMBP3 Silent p.Q590Q 0.24 TCGA-56-7223-01 22 30822732 30822732 T C MTFP1 Missense_Mutation p.F32S 0.28 deleterious(0) probably_damaging(0.973) TCGA-56-7223-01 22 31011714 31011714 C T TCN2 Missense_Mutation p.P294S 0.53 deleterious(0) probably_damaging(0.999) TCGA-56-7223-01 22 32589044 32589044 C A RFPL2 Missense_Mutation p.G134V 0.62 deleterious(0.03) probably_damaging(1) TCGA-56-7223-01 22 32590440 32590440 C T RFPL2 Missense_Mutation p.V53M 0.63 tolerated_low_confidence(0.06) benign(0.265) TCGA-56-7223-01 22 44322986 44322986 G A PNPLA3 Missense_Mutation p.R120K 0.55 deleterious(0.01) probably_damaging(0.995) TCGA-56-7223-01 2 101549457 101549457 G T NPAS2 Missense_Mutation p.M89I 0.35 deleterious(0.03) possibly_damaging(0.749) TCGA-56-7223-01 2 101564751 101564751 G A NPAS2 Missense_Mutation p.E140K 0.21 deleterious(0.01) possibly_damaging(0.805) TCGA-56-7223-01 2 118860802 118860802 G C INSIG2 Missense_Mutation p.D92H 0.57 deleterious(0) probably_damaging(1) TCGA-56-7223-01 2 120834848 120834848 G A EPB41L5 Missense_Mutation p.A224T 0.43 deleterious(0) probably_damaging(0.997) TCGA-56-7223-01 2 125530587 125530587 G T CNTNAP5 Missense_Mutation p.L914F 0.29 deleterious(0.01) benign(0.35) TCGA-56-7223-01 2 128870833 128870833 G T UGGT1 Splice_Site p.X232_splice 0.24 TCGA-56-7223-01 2 166767934 166767934 C T TTC21B Silent p.K788K 0.72 TCGA-56-7223-01 2 167160777 167160777 C A SCN9A Missense_Mutation p.R220I 0.59 deleterious(0) probably_damaging(1) TCGA-56-7223-01 2 176987531 176987531 C G HOXD9 Missense_Mutation p.S12C 0.23 deleterious(0) probably_damaging(0.998) TCGA-56-7223-01 2 177016515 177016515 T A HOXD4 Missense_Mutation p.Y52N 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-56-7223-01 2 178936331 178936331 C A PDE11A Silent p.V278V 0.29 TCGA-56-7223-01 2 179588785 179588785 T C TTN Silent p.V7067V 0.22 TCGA-56-7223-01 2 179605591 179605591 G T TTN Silent p.L4123L 0.63 TCGA-56-7223-01 2 181925402 181925402 G T UBE2E3 Missense_Mutation p.R130L 0.56 tolerated(0.06) probably_damaging(0.909) TCGA-56-7223-01 2 1926586 1926586 C T MYT1L Missense_Mutation p.D319N 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.771) TCGA-56-7223-01 2 207007448 207007448 G A NDUFS1 Silent p.T379T 0.29 TCGA-56-7223-01 2 209188866 209188866 G A PIKFYVE Missense_Mutation p.E731K 0.52 deleterious(0) probably_damaging(0.992) TCGA-56-7223-01 2 216285405 216285405 C T FN1 Missense_Mutation p.D556N 0.24 deleterious(0) probably_damaging(0.997) TCGA-56-7223-01 2 220405255 220405255 C T CHPF Missense_Mutation p.R393H 0.17 tolerated(0.15) benign(0.022) TCGA-56-7223-01 2 220421411 220421411 T C OBSL1 Silent p.T1367T 0.62 TCGA-56-7223-01 2 220439837 220439837 C A INHA Silent p.A230A 0.24 TCGA-56-7223-01 2 225367790 225367790 C T CUL3 Splice_Site p.X460_splice 0.60 TCGA-56-7223-01 2 225422413 225422413 C A CUL3 Missense_Mutation p.G76V 0.24 deleterious(0) probably_damaging(0.989) TCGA-56-7223-01 2 230911139 230911139 C G SLC16A14 Missense_Mutation p.E235Q 0.34 deleterious(0.05) benign(0.405) TCGA-56-7223-01 2 242075288 242075288 T A PASK Missense_Mutation p.Q435L 0.29 tolerated(0.13) benign(0.108) TCGA-56-7223-01 2 26915892 26915892 C A KCNK3 Missense_Mutation p.A50E 0.42 tolerated(0.92) benign(0.001) TCGA-56-7223-01 2 44508551 44508551 A T SLC3A1 Silent p.I212I 0.44 TCGA-56-7223-01 2 62227841 62227841 T C COMMD1 Silent p.I62I 0.46 TCGA-56-7223-01 2 74043605 74043605 C A C2orf78 Missense_Mutation p.A752D 0.25 deleterious(0.01) possibly_damaging(0.853) TCGA-56-7223-01 2 89266020 89266020 C T IGKV1-6 Missense_Mutation p.G38R 0.29 deleterious(0.02) possibly_damaging(0.537) TCGA-56-7223-01 3 10012347 10012347 T A EMC3 Splice_Site p.X165_splice 0.96 TCGA-56-7223-01 3 100413707 100413707 G A GPR128 Silent p.R752R 0.16 TCGA-56-7223-01 3 107910387 107910387 G A IFT57 Missense_Mutation p.T253M 0.12 deleterious(0.02) benign(0.223) TCGA-56-7223-01 3 109019283 109019283 C T DPPA2 Splice_Site p.X285_splice 0.32 TCGA-56-7223-01 3 113392212 113392212 C T KIAA2018 Missense_Mutation p.R20Q 0.22 probably_damaging(0.999) TCGA-56-7223-01 3 113955517 113955517 G T ZNF80 Nonsense_Mutation p.C135* 0.24 TCGA-56-7223-01 3 119426280 119426280 C A MAATS1 Missense_Mutation p.F77L 0.20 deleterious(0.04) possibly_damaging(0.654) TCGA-56-7223-01 3 120129827 120129827 C A FSTL1 Missense_Mutation p.K101N 0.35 tolerated(0.07) benign(0.073) TCGA-56-7223-01 3 120347141 120347141 C T HGD 3'UTR 0.18 TCGA-56-7223-01 3 120957865 120957865 C T STXBP5L Missense_Mutation p.P411L 0.25 deleterious(0.01) probably_damaging(1) TCGA-56-7223-01 3 121411134 121411134 G C GOLGB1 Missense_Mutation p.F2359L 0.45 benign(0.174) TCGA-56-7223-01 3 126224620 126224620 G T UROC1 Missense_Mutation p.T246N 0.38 deleterious(0) probably_damaging(0.995) TCGA-56-7223-01 3 126268894 126268894 C G C3orf22 Silent p.P81P 0.12 TCGA-56-7223-01 3 130613455 130613455 G C ATP2C1 Intron 0.11 TCGA-56-7223-01 3 134514453 134514453 C A EPHB1 5'UTR 0.37 TCGA-56-7223-01 3 137843400 137843400 C G A4GNT Missense_Mutation p.E243D 0.54 tolerated(0.51) benign(0.008) TCGA-56-7223-01 3 138191545 138191545 G T ESYT3 Missense_Mutation p.G694V 0.17 tolerated(0.08) probably_damaging(1) TCGA-56-7223-01 3 138195667 138195667 C T ESYT3 Silent p.L878L 0.15 TCGA-56-7223-01 3 147113864 147113864 C T ZIC4 Missense_Mutation p.V205I 0.19 deleterious(0) possibly_damaging(0.795) TCGA-56-7223-01 3 148727185 148727185 A G GYG1 Missense_Mutation p.K202E 0.38 deleterious(0) benign(0.313) TCGA-56-7223-01 3 157098986 157098986 G A VEPH1 Silent p.L362L 0.44 TCGA-56-7223-01 3 157099025 157099025 G A VEPH1 Silent p.I349I 0.45 TCGA-56-7223-01 3 157099053 157099053 G A VEPH1 Missense_Mutation p.S340L 0.46 deleterious(0.02) benign(0.185) TCGA-56-7223-01 3 157160195 157160195 G A PTX3 Silent p.K191K 0.49 TCGA-56-7223-01 3 157160376 157160376 G C PTX3 Missense_Mutation p.E252Q 0.47 deleterious(0.02) benign(0.297) TCGA-56-7223-01 3 157160423 157160423 G C PTX3 Missense_Mutation p.W267C 0.55 deleterious(0) probably_damaging(1) TCGA-56-7223-01 3 157160661 157160661 G A PTX3 Missense_Mutation p.E347K 0.49 deleterious(0.02) possibly_damaging(0.702) TCGA-56-7223-01 3 161214845 161214845 C G OTOL1 Missense_Mutation p.L84V 0.41 tolerated(0.12) unknown(0) TCGA-56-7223-01 3 164907880 164907880 G C SLITRK3 Missense_Mutation p.L247V 0.38 deleterious(0) probably_damaging(0.996) TCGA-56-7223-01 3 165547306 165547306 C T BCHE Missense_Mutation p.G506R 0.28 deleterious(0) probably_damaging(1) TCGA-56-7223-01 3 182590187 182590187 C T ATP11B Missense_Mutation p.S637L 0.18 tolerated(0.06) benign(0.076) TCGA-56-7223-01 3 183368109 183368109 C T KLHL24 5'UTR 0.49 TCGA-56-7223-01 3 193207621 193207621 G A ATP13A4 Silent p.F212F 0.10 TCGA-56-7223-01 3 196749830 196749830 G A MFI2 Silent p.F214F 0.24 TCGA-56-7223-01 3 196888587 196888587 G A DLG1 Missense_Mutation p.S169F 0.05 tolerated_low_confidence(0.09) possibly_damaging(0.543) TCGA-56-7223-01 3 419557 419557 G T CHL1 Missense_Mutation p.G603V 0.90 deleterious(0) probably_damaging(0.99) TCGA-56-7223-01 3 42251318 42251318 G A TRAK1 Missense_Mutation p.D602N 0.81 deleterious(0.01) possibly_damaging(0.67) TCGA-56-7223-01 3 47147545 47147545 T C SETD2 Missense_Mutation p.K1594R 0.90 tolerated(0.08) benign(0.092) TCGA-56-7223-01 3 9979780 9979780 C T CRELD1 Silent p.P150P 0.90 TCGA-56-7223-01 4 106848559 106848559 G T NPNT Missense_Mutation p.G80V 0.41 deleterious(0) probably_damaging(0.946) TCGA-56-7223-01 4 110758762 110758762 G A RRH Splice_Site p.X240_splice 0.45 TCGA-56-7223-01 4 115544666 115544666 G A UGT8 Silent p.L210L 0.33 TCGA-56-7223-01 4 123210278 123210278 C G KIAA1109 Missense_Mutation p.L3107V 0.39 probably_damaging(0.99) TCGA-56-7223-01 4 125631427 125631428 - C ANKRD50 Frame_Shift_Ins p.S81Qfs*9 0.29 TCGA-56-7223-01 4 134075488 134075488 C G PCDH10 Missense_Mutation p.S886R 0.39 tolerated(0.79) benign(0.391) TCGA-56-7223-01 4 146436037 146436037 T C SMAD1 Missense_Mutation p.V91A 0.42 deleterious(0) possibly_damaging(0.89) TCGA-56-7223-01 4 155287395 155287395 C T DCHS2 Missense_Mutation p.V221M 0.40 tolerated(0.38) benign(0.226) TCGA-56-7223-01 4 187004536 187004536 A G TLR3 Missense_Mutation p.I566V 0.36 tolerated(0.57) benign(0.001) TCGA-56-7223-01 4 20555467 20555467 G T SLIT2 Missense_Mutation p.M867I 0.32 deleterious(0.02) benign(0.078) TCGA-56-7223-01 4 2986264 2986264 G A GRK4 Missense_Mutation p.R26H 0.35 deleterious(0) probably_damaging(0.999) TCGA-56-7223-01 4 37591815 37591815 C T C4orf19 Silent p.S46S 0.47 TCGA-56-7223-01 4 47556751 47556751 C T ATP10D Silent p.D548D 0.38 TCGA-56-7223-01 4 70512920 70512920 A C UGT2A1 Missense_Mutation p.V148G 0.46 deleterious(0) possibly_damaging(0.846) TCGA-56-7223-01 4 73178042 73178042 G A ADAMTS3 Silent p.T629T 0.38 TCGA-56-7223-01 4 74902870 74902870 G C CXCL3 3'UTR 0.21 TCGA-56-7223-01 4 82064002 82064002 C A PRKG2 Missense_Mutation p.Q451H 0.47 tolerated(0.17) benign(0.002) TCGA-56-7223-01 5 118576134 118576134 C T DMXL1 Missense_Mutation p.T2870I 0.82 deleterious(0) probably_damaging(0.999) TCGA-56-7223-01 5 137727397 137727397 C G KDM3B Silent p.L692L 0.94 TCGA-56-7223-01 5 143586523 143586523 C A KCTD16 Missense_Mutation p.F82L 0.91 deleterious(0) probably_damaging(0.994) TCGA-56-7223-01 5 14406018 14406018 G A TRIO Missense_Mutation p.R1593Q 0.30 benign(0.328) TCGA-56-7223-01 5 145886595 145886595 G C TCERG1 Missense_Mutation p.R912P 0.54 deleterious(0) unknown(0) TCGA-56-7223-01 5 147451708 147451708 C T SPINK5 Intron 0.86 TCGA-56-7223-01 5 148904732 148904732 C T CSNK1A1 Nonsense_Mutation p.W78* 0.82 TCGA-56-7223-01 5 153429264 153429264 G A MFAP3 5'UTR 0.85 TCGA-56-7223-01 5 170667964 170667964 A G RANBP17 Missense_Mutation p.K819E 0.92 tolerated(0.29) benign(0.001) TCGA-56-7223-01 5 176310809 176310809 C T HK3 Missense_Mutation p.G672D 0.92 deleterious(0) probably_damaging(1) TCGA-56-7223-01 5 19839059 19839059 G A CDH18 Silent p.L13L 0.61 TCGA-56-7223-01 5 33937306 33937306 T C RXFP3 Missense_Mutation p.M154T 0.33 tolerated(0.07) benign(0.057) TCGA-56-7223-01 5 37310800 37310800 T G NUP155 Missense_Mutation p.I828L 0.60 tolerated(0.58) benign(0.006) TCGA-56-7223-01 5 38950351 38950351 C T RICTOR Missense_Mutation p.R1200Q 0.04 tolerated(0.15) benign(0.309) TCGA-56-7223-01 5 41186258 41186258 T C C6 Missense_Mutation p.T214A 0.24 tolerated(0.49) benign(0.114) TCGA-56-7223-01 5 45262583 45262583 T A HCN1 Missense_Mutation p.S705C 0.61 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-56-7223-01 5 79031459 79031459 A C CMYA5 Missense_Mutation p.K2291Q 0.86 probably_damaging(0.981) TCGA-56-7223-01 5 80497212 80497212 G C RASGRF2 Missense_Mutation p.D953H 0.82 deleterious(0.01) possibly_damaging(0.881) TCGA-56-7223-01 5 94956106 94956106 C T GPR150 Missense_Mutation p.R43C 0.92 tolerated(0.05) benign(0.003) TCGA-56-7223-01 6 117746750 117746750 C A ROS1 Missense_Mutation p.V24L 0.58 tolerated_low_confidence(0.17) benign(0.001) TCGA-56-7223-01 6 129794483 129794483 G T LAMA2 Silent p.T2475T 0.60 TCGA-56-7223-01 6 139355298 139355298 A G ABRACL Translation_Start_Site p.M1? 0.29 tolerated(0.07) benign(0.173) TCGA-56-7223-01 6 144814523 144814523 G A UTRN Silent p.T1508T 0.53 TCGA-56-7223-01 6 155129318 155129318 A G SCAF8 Missense_Mutation p.I366V 0.46 deleterious_low_confidence(0.01) unknown(0) TCGA-56-7223-01 6 155776014 155776014 A G NOX3 Silent p.N62N 0.50 TCGA-56-7223-01 6 158567937 158567938 - A SERAC1 Frame_Shift_Ins p.S122* 0.27 TCGA-56-7223-01 6 17987317 17987317 G T KIF13A Missense_Mutation p.H38Q 0.28 tolerated(0.2) benign(0.057) TCGA-56-7223-01 6 28474126 28474126 C T GPX6 Missense_Mutation p.E108K 0.27 deleterious(0) probably_damaging(1) TCGA-56-7223-01 6 28891401 28891401 G A TRIM27 Silent p.S3S 0.35 TCGA-56-7223-01 6 33168234 33168234 G A RXRB Missense_Mutation p.P7L 0.62 deleterious_low_confidence(0) unknown(0) TCGA-56-7223-01 6 43029197 43029197 G A KLC4 Missense_Mutation p.A60T 0.29 tolerated(0.29) benign(0.022) TCGA-56-7223-01 6 73751671 73751671 A T KCNQ5 Missense_Mutation p.I168F 0.56 deleterious(0) probably_damaging(0.99) TCGA-56-7223-01 6 76712676 76712676 G C IMPG1 Missense_Mutation p.P417R 0.30 deleterious(0) possibly_damaging(0.839) TCGA-56-7223-01 6 87725969 87725969 C G HTR1E Missense_Mutation p.P306R 0.55 deleterious(0) probably_damaging(1) TCGA-56-7223-01 7 102968129 102968129 T G DNAJC2 Missense_Mutation p.N135T 0.47 deleterious(0.02) benign(0.044) TCGA-56-7223-01 7 107533672 107533672 G A DLD Missense_Mutation p.G23S 0.50 tolerated_low_confidence(0.76) benign(0.002) TCGA-56-7223-01 7 113519122 113519122 A G PPP1R3A Silent p.H675H 0.22 TCGA-56-7223-01 7 121668632 121668632 A G PTPRZ1 Missense_Mutation p.Y1672C 0.40 deleterious(0) probably_damaging(0.993) TCGA-56-7223-01 7 122091430 122091430 G A CADPS2 Silent p.F762F 0.50 TCGA-56-7223-01 7 128454724 128454724 G A CCDC136 Silent p.L932L 0.47 TCGA-56-7223-01 7 128480724 128480724 C A FLNC Missense_Mutation p.R558S 0.45 tolerated(0.07) probably_damaging(0.964) TCGA-56-7223-01 7 137597678 137597678 C G CREB3L2 Intron 0.30 TCGA-56-7223-01 7 142625893 142625893 G A TRPV5 Silent p.L219L 0.55 TCGA-56-7223-01 7 143047501 143047501 G T CLCN1 Missense_Mutation p.V814F 0.44 deleterious(0) probably_damaging(0.957) TCGA-56-7223-01 7 143140564 143140564 G T TAS2R60 Missense_Mutation p.V7F 0.37 tolerated(0.15) possibly_damaging(0.694) TCGA-56-7223-01 7 143792980 143792980 C A OR2A12 Silent p.A260A 0.50 TCGA-56-7223-01 7 144364824 144364824 G A TPK1 Intron 0.41 TCGA-56-7223-01 7 149481081 149481081 A T SSPO RNA 0.46 TCGA-56-7223-01 7 149516577 149516577 C T SSPO RNA 0.35 TCGA-56-7223-01 7 149522450 149522450 G T SSPO RNA 0.34 TCGA-56-7223-01 7 158552824 158552824 G A ESYT2 Silent p.D464D 0.49 TCGA-56-7223-01 7 21901529 21901529 A T DNAH11 Missense_Mutation p.Q3761L 0.32 benign(0.037) TCGA-56-7223-01 7 27141890 27141890 G C HOXA2 Missense_Mutation p.P77R 0.43 tolerated(0.34) possibly_damaging(0.478) TCGA-56-7223-01 7 27194844 27194844 G C HOXA7 Intron 0.52 TCGA-56-7223-01 7 34971250 34971250 T A DPY19L1 Nonsense_Mutation p.K655* 0.49 TCGA-56-7223-01 7 38247213 38247213 G A STARD3NL Silent p.R36R 0.18 TCGA-56-7223-01 7 40172797 40172797 T C MPLKIP Missense_Mutation p.N134S 0.09 deleterious(0.01) possibly_damaging(0.801) TCGA-56-7223-01 7 44574198 44574198 C A NPC1L1 Missense_Mutation p.G672W 0.30 deleterious(0) probably_damaging(1) TCGA-56-7223-01 7 71130408 71130408 G C WBSCR17 Missense_Mutation p.G365R 0.37 deleterious(0) probably_damaging(0.998) TCGA-56-7223-01 7 81331961 81331961 C A HGF Missense_Mutation p.R708L 0.38 deleterious(0.02) probably_damaging(1) TCGA-56-7223-01 7 87792455 87792455 G T ADAM22 Missense_Mutation p.C679F 0.59 deleterious(0) probably_damaging(1) TCGA-56-7223-01 7 88963878 88963878 C A ZNF804B Missense_Mutation p.Q528K 0.37 tolerated(0.06) possibly_damaging(0.824) TCGA-56-7223-01 7 88964191 88964191 C A ZNF804B Missense_Mutation p.S632Y 0.37 deleterious(0) probably_damaging(0.935) TCGA-56-7223-01 7 90042712 90042713 CA - CLDN12 Frame_Shift_Del p.T243Hfs*6 0.35 TCGA-56-7223-01 7 92157656 92157656 G C PEX1 Missense_Mutation p.P32A 0.36 deleterious(0.01) benign(0.13) TCGA-56-7223-01 7 94035602 94035602 C T COL1A2 Missense_Mutation p.A194V 0.51 unknown(0) TCGA-56-7223-01 7 95221838 95221838 C A PDK4 Missense_Mutation p.V201L 0.39 tolerated(0.39) benign(0.032) TCGA-56-7223-01 7 99569450 99569450 C G AZGP1 Missense_Mutation p.D86H 0.46 deleterious(0) possibly_damaging(0.626) TCGA-56-7223-01 7 99987604 99987604 G C PILRA Missense_Mutation p.G183A 0.48 deleterious(0.01) benign(0.079) TCGA-56-7223-01 8 110495313 110495313 G A PKHD1L1 Silent p.L3185L 0.97 TCGA-56-7223-01 8 113323378 113323378 G C CSMD3 Missense_Mutation p.P2572A 0.88 deleterious(0.01) probably_damaging(0.983) TCGA-56-7223-01 8 118175681 118175681 C T SLC30A8 Silent p.A247A 0.87 TCGA-56-7223-01 8 37556015 37556015 G C ZNF703 Silent p.L532L 1.00 TCGA-56-7223-01 8 43033293 43033293 T A HGSNAT Missense_Mutation p.L310M 0.94 deleterious(0) possibly_damaging(0.542) TCGA-56-7223-01 8 53124643 53124643 G C ST18 Missense_Mutation p.L28V 0.35 tolerated(0.25) benign(0.004) TCGA-56-7223-01 8 92261952 92261952 A G SLC26A7 Missense_Mutation p.I25V 0.93 tolerated(0.52) benign(0.012) TCGA-56-7223-01 9 112969840 112969840 G C C9orf152 Missense_Mutation p.P7R 0.29 deleterious(0.03) probably_damaging(0.977) TCGA-56-7223-01 9 116151882 116151882 A G ALAD Silent p.A237A 0.41 TCGA-56-7223-01 9 138586155 138586155 A C SOHLH1 Intron 0.30 TCGA-56-7223-01 9 140078124 140078124 C A ANAPC2 Missense_Mutation p.G390C 0.42 deleterious(0) probably_damaging(1) TCGA-56-7223-01 9 140136229 140136229 G A TUBB4B Silent p.G38G 0.47 TCGA-56-7223-01 9 140811845 140811845 T C CACNA1B Missense_Mutation p.C310R 0.47 deleterious(0) benign(0.156) TCGA-56-7223-01 9 34556281 34556281 C A CNTFR Missense_Mutation p.R247L 0.93 deleterious(0.01) probably_damaging(0.99) TCGA-56-7223-01 X 106960032 106960032 C A TSC22D3 Intron 0.17 TCGA-56-7223-01 X 111195627 111195627 T C TRPC5 Missense_Mutation p.K8E 0.90 deleterious_low_confidence(0.01) possibly_damaging(0.472) TCGA-56-7223-01 X 12725670 12725670 T C FRMPD4 Missense_Mutation p.L457P 0.97 deleterious(0.01) probably_damaging(0.999) TCGA-56-7223-01 X 136113607 136113607 G T GPR101 Missense_Mutation p.T76N 1.00 deleterious(0.01) probably_damaging(0.986) TCGA-56-7223-01 X 144904435 144904435 C T SLITRK2 Silent p.I164I 0.96 TCGA-56-7223-01 X 153133887 153133887 G T L1CAM Missense_Mutation p.R525S 0.93 tolerated(0.18) benign(0.319) TCGA-56-7223-01 X 153133888 153133888 G T L1CAM Silent p.P524P 0.93 TCGA-56-7223-01 X 1584249 1584249 G - P2RY8 3'UTR 0.18 TCGA-56-7223-01 X 18198661 18198661 G A BEND2 Silent p.S466S 0.82 TCGA-56-7223-01 X 2407531 2407531 C A ZBED1 Missense_Mutation p.M410I 0.93 tolerated(0.27) benign(0.033) TCGA-56-7223-01 X 40560417 40560417 T A MED14 Missense_Mutation p.K497M 0.81 deleterious(0) possibly_damaging(0.855) TCGA-56-7223-01 X 68725613 68725613 C - FAM155B Frame_Shift_Del p.P165Lfs*60 0.53 TCGA-56-7223-01 X 73066638 73066638 A T XIST RNA 0.90 TCGA-56-7579-01 10 100401627 100401627 C G HPSE2 Missense_Mutation p.D359H 0.26 tolerated(0.13) probably_damaging(0.954) TCGA-56-7579-01 10 112053867 112053867 A T SMNDC1 3'UTR 0.33 TCGA-56-7579-01 10 116251615 116251615 G T ABLIM1 Missense_Mutation p.P306H 0.25 deleterious(0) probably_damaging(0.999) TCGA-56-7579-01 10 118307884 118307884 G A PNLIP Missense_Mutation p.D72N 0.32 tolerated(0.68) benign(0.014) TCGA-56-7579-01 10 127455218 127455218 C T MMP21 3'UTR 0.23 TCGA-56-7579-01 10 135027537 135027537 C G KNDC1 Missense_Mutation p.Q1530E 0.36 deleterious(0) possibly_damaging(0.459) TCGA-56-7579-01 10 15138566 15138566 C T C10orf111 Silent p.P86P 0.45 TCGA-56-7579-01 10 16919035 16919035 G T CUBN Missense_Mutation p.S2989R 0.24 tolerated(0.44) benign(0.014) TCGA-56-7579-01 10 43691709 43691709 G C RASGEF1A Missense_Mutation p.L477V 0.22 tolerated(0.18) benign(0.069) TCGA-56-7579-01 10 55600198 55600198 T C PCDH15 Missense_Mutation p.I1289V 0.33 tolerated(0.09) benign(0.078) TCGA-56-7579-01 10 55755462 55755462 C A PCDH15 Missense_Mutation p.A939S 0.17 tolerated(0.06) probably_damaging(0.988) TCGA-56-7579-01 10 70946221 70946221 C T SUPV3L1 Silent p.F124F 0.36 TCGA-56-7579-01 10 75557803 75557803 T C ZSWIM8 Silent p.Y1309Y 0.42 TCGA-56-7579-01 10 85982271 85982271 G C LRIT2 Missense_Mutation p.P353R 0.17 deleterious(0.04) benign(0.149) TCGA-56-7579-01 10 98129948 98129948 G A TLL2 Silent p.Y929Y 0.33 TCGA-56-7579-01 11 106579266 106579266 G T GUCY1A2 Missense_Mutation p.R686S 0.69 deleterious(0.01) possibly_damaging(0.889) TCGA-56-7579-01 11 129752343 129752343 T C NFRKB Intron 0.34 TCGA-56-7579-01 11 17530948 17530948 G T USH1C Silent p.P656P 0.54 TCGA-56-7579-01 11 18751005 18751005 C T PTPN5 Silent p.Q533Q 0.23 TCGA-56-7579-01 11 46817187 46817187 G T CKAP5 Missense_Mutation p.S536Y 0.29 deleterious(0.01) benign(0.309) TCGA-56-7579-01 11 4944861 4944861 G T OR51G1 Missense_Mutation p.L237I 0.46 deleterious(0.02) possibly_damaging(0.493) TCGA-56-7579-01 11 55371529 55371529 G T OR4C11 Nonsense_Mutation p.C107* 0.55 TCGA-56-7579-01 11 55905044 55905044 C A OR8J3 Missense_Mutation p.V51F 0.26 deleterious(0.02) possibly_damaging(0.495) TCGA-56-7579-01 11 56258177 56258177 T C OR5M8 Missense_Mutation p.I224V 0.29 tolerated(0.13) benign(0.047) TCGA-56-7579-01 11 6023462 6023462 A G OR56A4 Missense_Mutation p.F306S 0.56 deleterious(0.05) possibly_damaging(0.833) TCGA-56-7579-01 11 60620656 60620656 A G PTGDR2 Silent p.I180I 0.18 TCGA-56-7579-01 11 63176256 63176256 T C SLC22A9 Silent p.Y502Y 0.38 TCGA-56-7579-01 11 63670616 63670616 G T MARK2 Missense_Mutation p.Q500H 0.33 tolerated(0.09) benign(0.013) TCGA-56-7579-01 11 67925750 67925750 C A SUV420H1 Missense_Mutation p.S688I 0.27 tolerated(0.06) benign(0.282) TCGA-56-7579-01 11 7064732 7064732 A T NLRP14 Missense_Mutation p.Y492F 0.10 deleterious(0) probably_damaging(0.997) TCGA-56-7579-01 11 75317011 75317011 C A MAP6 Missense_Mutation p.K386N 0.24 deleterious(0) benign(0.255) TCGA-56-7579-01 12 106460421 106460421 T C NUAK1 3'UTR 0.25 TCGA-56-7579-01 12 110429501 110429501 C G GIT2 Silent p.R39R 0.32 TCGA-56-7579-01 12 115117422 115117422 C A TBX3 Missense_Mutation p.R251L 0.31 deleterious(0) probably_damaging(0.99) TCGA-56-7579-01 12 122284807 122284807 G C HPD Silent p.V264V 0.26 TCGA-56-7579-01 12 122990241 122990241 C A RSRC2 Missense_Mutation p.A380S 0.30 tolerated(0.17) unknown(0) TCGA-56-7579-01 12 12315275 12315275 C T LRP6 Missense_Mutation p.A711T 0.48 deleterious(0.01) probably_damaging(0.967) TCGA-56-7579-01 12 12315276 12315276 C T LRP6 Missense_Mutation p.M710I 0.48 tolerated(0.26) possibly_damaging(0.47) TCGA-56-7579-01 12 15091395 15091396 CG - ERP27 Frame_Shift_Del p.T16Mfs*2 0.30 TCGA-56-7579-01 12 15637005 15637005 T C PTPRO Missense_Mutation p.V58A 0.49 tolerated_low_confidence(0.24) benign(0.065) TCGA-56-7579-01 12 1993972 1993972 C A CACNA2D4 Nonsense_Mutation p.E412* 0.53 TCGA-56-7579-01 12 21997719 21997719 A T ABCC9 Missense_Mutation p.I1076K 0.29 deleterious(0) probably_damaging(0.979) TCGA-56-7579-01 12 3103927 3103927 G A TEAD4 5'UTR 0.39 TCGA-56-7579-01 12 50847363 50847363 C T LARP4 Missense_Mutation p.P309S 0.49 tolerated(0.19) possibly_damaging(0.899) TCGA-56-7579-01 12 53070215 53070215 G A KRT1 Missense_Mutation p.A440V 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-56-7579-01 12 53662909 53662909 G C ESPL1 Silent p.L61L 0.46 TCGA-56-7579-01 12 55715107 55715107 C T OR6C1 Missense_Mutation p.H242Y 0.42 deleterious_low_confidence(0) probably_damaging(1) TCGA-56-7579-01 12 56143659 56143659 G A GDF11 Missense_Mutation p.C406Y 0.58 deleterious(0) probably_damaging(1) TCGA-56-7579-01 12 57590854 57590854 G A LRP1 Silent p.Q2994Q 0.55 TCGA-56-7579-01 12 94761611 94761611 C T CCDC41 Silent p.Q434Q 0.44 TCGA-56-7579-01 14 102378915 102378915 G A PPP2R5C Intron 0.50 TCGA-56-7579-01 14 106405640 106405640 C T IGHV6-1 Missense_Mutation p.E112K 0.27 deleterious(0.04) benign(0.154) TCGA-56-7579-01 14 106967544 106967544 C G IGHV1-46 5'UTR 0.38 TCGA-56-7579-01 14 20944540 20944540 C G PNP Intron 0.28 TCGA-56-7579-01 14 21058553 21058553 G A RNASE12 Silent p.L110L 0.33 TCGA-56-7579-01 14 24886012 24886012 C T NYNRIN Missense_Mutation p.A1686V 0.52 deleterious_low_confidence(0.05) probably_damaging(0.996) TCGA-56-7579-01 14 38723927 38723927 C T CLEC14A Missense_Mutation p.R434K 0.37 tolerated(0.14) benign(0.292) TCGA-56-7579-01 14 70515541 70515541 C T SLC8A3 Missense_Mutation p.G784S 0.20 deleterious(0) probably_damaging(0.991) TCGA-56-7579-01 14 76957818 76957818 G C ESRRB Missense_Mutation p.Q272H 0.41 deleterious(0) probably_damaging(0.977) TCGA-56-7579-01 14 95030129 95030129 G T SERPINA4 Missense_Mutation p.G104C 0.29 deleterious(0.04) probably_damaging(0.997) TCGA-56-7579-01 14 95085561 95085561 G T SERPINA3 Missense_Mutation p.D225Y 0.30 tolerated(1) benign(0.159) TCGA-56-7579-01 15 35274147 35274147 G C ZNF770 Missense_Mutation p.H497D 0.33 deleterious(0) probably_damaging(0.998) TCGA-56-7579-01 15 38990598 38990598 G T C15orf53 Missense_Mutation p.R131L 0.36 tolerated_low_confidence(0.46) benign(0.01) TCGA-56-7579-01 15 39910113 39910113 G T FSIP1 Missense_Mutation p.Q508K 0.35 tolerated(0.09) possibly_damaging(0.624) TCGA-56-7579-01 15 41758372 41758372 C T RTF1 Missense_Mutation p.R271W 0.17 tolerated(0.1) benign(0.001) TCGA-56-7579-01 15 52517678 52517678 C A MYO5C Missense_Mutation p.D1087Y 0.29 deleterious(0.01) possibly_damaging(0.713) TCGA-56-7579-01 15 62155638 62155638 C A VPS13C Splice_Site p.X3651_splice 0.25 TCGA-56-7579-01 15 75013786 75013786 G T CYP1A1 Silent p.P337P 0.25 TCGA-56-7579-01 15 75132918 75132918 G C ULK3 Silent p.L178L 0.14 TCGA-56-7579-01 15 77473038 77473038 C A PEAK1 Nonsense_Mutation p.E411* 0.27 TCGA-56-7579-01 15 79058037 79058037 C A ADAMTS7 Missense_Mutation p.D1406Y 0.23 deleterious(0.05) benign(0.01) TCGA-56-7579-01 16 20043777 20043777 G A GPR139 Silent p.T114T 0.28 TCGA-56-7579-01 16 20331046 20331046 G T GP2 Silent p.V304V 0.21 TCGA-56-7579-01 16 21215483 21215483 A T ZP2 Missense_Mutation p.F280L 0.29 deleterious(0) probably_damaging(0.999) TCGA-56-7579-01 16 23388539 23388539 G T SCNN1B Missense_Mutation p.G442C 0.44 deleterious(0.01) possibly_damaging(0.762) TCGA-56-7579-01 16 24909316 24909316 G T SLC5A11 Missense_Mutation p.A298S 0.22 tolerated(0.81) benign(0.277) TCGA-56-7579-01 16 3021611 3021612 - GGCG PAQR4 Frame_Shift_Ins p.L165Cfs*71 0.38 TCGA-56-7579-01 16 31382721 31382721 G C ITGAX Silent p.A636A 0.22 TCGA-56-7579-01 16 3306335 3306335 C G MEFV Missense_Mutation p.E85Q 0.20 deleterious(0) probably_damaging(0.992) TCGA-56-7579-01 16 49672203 49672203 G T ZNF423 Missense_Mutation p.P287Q 0.27 tolerated(0.15) probably_damaging(0.978) TCGA-56-7579-01 16 50118488 50118488 G - HEATR3 Frame_Shift_Del p.T435Lfs*21 0.19 TCGA-56-7579-01 16 56669681 56669681 C T MT1M 3'Flank 0.21 TCGA-56-7579-01 16 56669701 56669701 T A MT1M 3'Flank 0.23 TCGA-56-7579-01 16 67984307 67984307 G T SLC12A4 Missense_Mutation p.T517K 0.23 deleterious(0) probably_damaging(1) TCGA-56-7579-01 16 68056518 68056518 C A DDX28 Silent p.L196L 0.39 TCGA-56-7579-01 16 69056825 69056825 C T TANGO6 Silent p.A979A 0.30 TCGA-56-7579-01 16 72829393 72829393 T C ZFHX3 Silent p.P2396P 0.22 TCGA-56-7579-01 16 772325 772325 A G FAM173A Missense_Mutation p.D159G 0.32 tolerated(0.13) benign(0.005) TCGA-56-7579-01 16 81232610 81232610 T C PKD1L2 Silent p.Q400Q 0.65 TCGA-56-7579-01 16 89964963 89964963 A G TCF25 Splice_Site p.X341_splice 0.52 TCGA-56-7579-01 17 10317613 10317613 C A MYH8 Splice_Site p.X302_splice 0.42 TCGA-56-7579-01 17 10358559 10358559 T C MYH4 Missense_Mutation p.K743R 0.44 tolerated(0.55) benign(0.146) TCGA-56-7579-01 17 20224669 20224669 G T AC004702.2 Intron 0.26 TCGA-56-7579-01 17 21826213 21826213 G A FAM27L RNA 0.15 TCGA-56-7579-01 17 25756778 25756778 G C TBC1D3P5 RNA 0.46 TCGA-56-7579-01 17 26684315 26684315 G C POLDIP2 Missense_Mutation p.R53G 0.33 deleterious(0.01) benign(0.372) TCGA-56-7579-01 17 29667592 29667592 T C NF1 Missense_Mutation p.Y2331H 0.66 deleterious(0) probably_damaging(0.986) TCGA-56-7579-01 17 34432797 34432797 C T CCL4 3'UTR 0.67 TCGA-56-7579-01 17 3572804 3572804 C A EMC6 3'UTR 0.39 TCGA-56-7579-01 17 4539251 4539251 G A ALOX15 Missense_Mutation p.R322C 0.59 tolerated(0.16) benign(0.009) TCGA-56-7579-01 17 61498890 61498890 A C TANC2 Silent p.I1849I 0.35 TCGA-56-7579-01 17 65942074 65942074 C T BPTF Missense_Mutation p.S2417F 0.77 probably_damaging(0.992) TCGA-56-7579-01 17 65942133 65942133 C G BPTF Missense_Mutation p.Q2437E 0.70 benign(0.099) TCGA-56-7579-01 17 7416778 7416778 C T POLR2A Missense_Mutation p.P1732L 0.52 unknown(0) TCGA-56-7579-01 17 7577559 7577559 G C TP53 Missense_Mutation p.S241C 0.31 deleterious(0) probably_damaging(1) TCGA-56-7579-01 17 78268560 78268560 G A RNF213 Missense_Mutation p.G505R 0.79 benign(0.042) TCGA-56-7579-01 17 9760802 9760802 C A GLP2R Missense_Mutation p.T225N 0.59 deleterious(0) possibly_damaging(0.633) TCGA-56-7579-01 18 13740240 13740240 A G RNMT Missense_Mutation p.I252V 0.50 tolerated(0.12) benign(0.062) TCGA-56-7579-01 18 14543044 14543044 G T POTEC Nonsense_Mutation p.C34* 0.32 TCGA-56-7579-01 18 14543080 14543080 G C POTEC Missense_Mutation p.S22R 0.28 tolerated_low_confidence(0.07) probably_damaging(0.944) TCGA-56-7579-01 18 21098911 21098911 A T C18orf8 Silent p.T237T 0.28 TCGA-56-7579-01 18 21106662 21106662 A T C18orf8 Silent p.G374G 0.32 TCGA-56-7579-01 18 2554667 2554667 C G METTL4 Splice_Site p.X277_splice 0.29 TCGA-56-7579-01 18 31326398 31326398 C G ASXL3 Missense_Mutation p.P2196A 0.34 probably_damaging(0.999) TCGA-56-7579-01 18 72997978 72997978 A T TSHZ1 Nonsense_Mutation p.K161* 0.15 TCGA-56-7579-01 19 12575088 12575088 G A ZNF709 Missense_Mutation p.H550Y 0.55 deleterious(0) probably_damaging(0.995) TCGA-56-7579-01 19 17886898 17886898 C A FCHO1 Silent p.A370A 0.37 TCGA-56-7579-01 19 19627133 19627133 G T NDUFA13 Missense_Mutation p.G29V 0.57 deleterious(0) probably_damaging(0.986) TCGA-56-7579-01 19 21116936 21116936 A G ZNF85 Missense_Mutation p.Y37C 0.46 deleterious(0) possibly_damaging(0.798) TCGA-56-7579-01 19 33095227 33095227 C T ANKRD27 Missense_Mutation p.G866E 0.48 deleterious(0) probably_damaging(0.982) TCGA-56-7579-01 19 36024440 36024440 G T GAPDHS Missense_Mutation p.R4L 0.50 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-56-7579-01 19 36526264 36526264 G A THAP8 3'UTR 0.44 TCGA-56-7579-01 19 45719445 45719445 T A EXOC3L2 Missense_Mutation p.Q276L 0.57 tolerated(0.34) benign(0.324) TCGA-56-7579-01 19 46313924 46313924 C G RSPH6A Missense_Mutation p.Q275H 0.54 tolerated(0.05) possibly_damaging(0.665) TCGA-56-7579-01 19 4682786 4682786 T C DPP9 Missense_Mutation p.Y799C 0.42 deleterious(0) probably_damaging(0.981) TCGA-56-7579-01 19 54941750 54941750 C G TTYH1 Silent p.L302L 0.47 TCGA-56-7579-01 19 55087012 55087012 G C LILRA2 Silent p.L315L 0.44 TCGA-56-7579-01 19 57335634 57335634 T C PEG3 Silent p.P130P 0.51 TCGA-56-7579-01 19 58485467 58485467 C A C19orf18 Missense_Mutation p.A76S 0.47 tolerated(0.39) benign(0.005) TCGA-56-7579-01 19 58565155 58565155 G C ZSCAN1 Silent p.P321P 0.58 TCGA-56-7579-01 19 6679421 6679421 C G C3 Missense_Mutation p.E1515Q 0.44 deleterious(0) possibly_damaging(0.824) TCGA-56-7579-01 1 101200208 101200208 C G VCAM1 Missense_Mutation p.S648C 0.36 deleterious(0) probably_damaging(0.998) TCGA-56-7579-01 1 103548482 103548482 T G COL11A1 Silent p.P51P 0.25 TCGA-56-7579-01 1 145293459 145293459 A G NBPF10 Silent p.L18L 0.06 TCGA-56-7579-01 1 151992777 151992777 G A NBPF18P RNA 0.24 TCGA-56-7579-01 1 154744467 154744467 C G KCNN3 Missense_Mutation p.V478L 0.18 tolerated(0.65) benign(0.203) TCGA-56-7579-01 1 156713957 156713957 C A HDGF Nonsense_Mutation p.E179* 0.36 TCGA-56-7579-01 1 158435416 158435416 G T OR10K1 Missense_Mutation p.R22M 0.27 deleterious(0.01) possibly_damaging(0.566) TCGA-56-7579-01 1 158626408 158626408 G C SPTA1 Silent p.L948L 0.27 TCGA-56-7579-01 1 159799735 159799735 C A SLAMF8 Silent p.P40P 0.33 TCGA-56-7579-01 1 160466131 160466131 C T SLAMF6 Silent p.L34L 0.34 TCGA-56-7579-01 1 160580542 160580543 CT - SLAMF1 Frame_Shift_Del p.S335Lfs*11 0.29 TCGA-56-7579-01 1 16458874 16458874 C A EPHA2 Missense_Mutation p.R705L 0.28 deleterious(0) possibly_damaging(0.667) TCGA-56-7579-01 1 176564712 176564712 G C PAPPA2 Missense_Mutation p.D658H 0.24 deleterious(0) probably_damaging(0.99) TCGA-56-7579-01 1 177250324 177250324 C T BRINP2 Missense_Mutation p.P671L 0.31 deleterious(0.01) possibly_damaging(0.601) TCGA-56-7579-01 1 179520401 179520401 G T NPHS2 Silent p.P353P 0.49 TCGA-56-7579-01 1 200017552 200017552 C A NR5A2 Missense_Mutation p.P239H 0.31 tolerated(0.07) benign(0.186) TCGA-56-7579-01 1 200522595 200522595 T G KIF14 Missense_Mutation p.K1623T 0.26 deleterious(0.05) benign(0.035) TCGA-56-7579-01 1 211966517 211966517 T C LPGAT1 Missense_Mutation p.E85G 0.25 deleterious(0) benign(0.111) TCGA-56-7579-01 1 213146183 213146183 C T VASH2 Silent p.P209P 0.24 TCGA-56-7579-01 1 225600341 225600341 T C LBR Missense_Mutation p.Y300C 0.24 tolerated(0.09) benign(0.151) TCGA-56-7579-01 1 229661749 229661749 C A ABCB10 Missense_Mutation p.A614S 0.38 tolerated(0.71) benign(0.01) TCGA-56-7579-01 1 237895449 237895449 G T RYR2 Missense_Mutation p.C3680F 0.26 benign(0.004) TCGA-56-7579-01 1 240370408 240370408 C G FMN2 Missense_Mutation p.R766G 0.35 unknown(0) TCGA-56-7579-01 1 240555808 240555808 C G FMN2 Intron 0.24 TCGA-56-7579-01 1 248309059 248309059 A G OR2M5 Missense_Mutation p.I204V 0.32 tolerated(1) benign(0.009) TCGA-56-7579-01 1 248436252 248436252 T A OR2T33 Missense_Mutation p.S289C 0.26 deleterious(0) probably_damaging(0.977) TCGA-56-7579-01 1 248512182 248512182 A G OR14C36 Missense_Mutation p.T36A 0.34 tolerated(1) benign(0.117) TCGA-56-7579-01 1 26349170 26349170 G C EXTL1 Missense_Mutation p.W11C 0.22 deleterious(0.02) benign(0.035) TCGA-56-7579-01 1 29069521 29069521 G A YTHDF2 Missense_Mutation p.A247T 0.35 deleterious(0) probably_damaging(0.997) TCGA-56-7579-01 1 32257966 32257966 G - SPOCD1 Frame_Shift_Del p.R938Gfs*122 0.23 TCGA-56-7579-01 1 40035604 40035604 T C PABPC4 Missense_Mutation p.N192D 0.26 deleterious(0) probably_damaging(0.945) TCGA-56-7579-01 1 40773881 40773881 C T COL9A2 Missense_Mutation p.G295S 0.19 deleterious(0) possibly_damaging(0.855) TCGA-56-7579-01 1 40874400 40874400 C T SMAP2 Nonsense_Mutation p.Q105* 0.33 TCGA-56-7579-01 1 57476905 57476905 T C DAB1 Silent p.S495S 0.32 TCGA-56-7579-01 1 70300539 70300539 G A LRRC7 Missense_Mutation p.A155T 0.26 tolerated(0.06) benign(0.026) TCGA-56-7579-01 1 70646811 70646811 T A LRRC40 Missense_Mutation p.N207Y 0.12 deleterious(0) probably_damaging(0.995) TCGA-56-7579-01 1 90049373 90049373 A C LRRC8B Silent p.L388L 0.22 TCGA-56-7579-01 1 982043 982043 T A AGRN Missense_Mutation p.S1060T 0.11 tolerated(0.08) benign(0.307) TCGA-56-7579-01 1 99387558 99387558 T C LPPR5 Silent p.L226L 0.19 TCGA-56-7579-01 20 23065841 23065841 C A CD93 Missense_Mutation p.C330F 0.29 deleterious(0) probably_damaging(1) TCGA-56-7579-01 20 279196 279196 G C ZCCHC3 Missense_Mutation p.E323D 0.33 tolerated(0.81) benign(0.035) TCGA-56-7579-01 20 3193850 3193850 T - ITPA Frame_Shift_Del p.L35Wfs*54 0.32 TCGA-56-7579-01 20 33539618 33539618 T A GSS Missense_Mutation p.Q13L 0.22 tolerated(0.27) benign(0.01) TCGA-56-7579-01 20 376920 376920 G A TRIB3 Silent p.A221A 0.21 TCGA-56-7579-01 20 39991667 39991667 T A EMILIN3 Missense_Mutation p.E181V 0.37 deleterious(0) possibly_damaging(0.851) TCGA-56-7579-01 20 4713066 4713066 T C PRNT Missense_Mutation p.N86S 0.55 tolerated_low_confidence(0.14) possibly_damaging(0.497) TCGA-56-7579-01 20 61162259 61162259 C A C20orf166 Silent p.T24T 0.36 TCGA-56-7579-01 20 8678373 8678373 A G PLCB1 Silent p.A370A 0.35 TCGA-56-7579-01 21 11049475 11049475 C T BAGE2 RNA 0.06 TCGA-56-7579-01 21 11058275 11058275 C A BAGE2 RNA 0.05 TCGA-56-7579-01 21 47766802 47766802 C G PCNT Missense_Mutation p.A289G 0.42 probably_damaging(0.93) TCGA-56-7579-01 22 19753292 19753292 C G TBX1 Silent p.L284L 0.33 TCGA-56-7579-01 22 28193233 28193233 G A MN1 Missense_Mutation p.P1100L 0.15 benign(0.182) TCGA-56-7579-01 22 37211248 37211248 G A PVALB Silent p.F31F 0.41 TCGA-56-7579-01 22 40816418 40816418 G T MKL1 Missense_Mutation p.D348E 0.30 tolerated(0.12) probably_damaging(0.996) TCGA-56-7579-01 2 106710431 106710431 T C UXS1 3'UTR 0.37 TCGA-56-7579-01 2 125281911 125281911 G A CNTNAP5 Silent p.S452S 0.27 TCGA-56-7579-01 2 130949402 130949402 C T TUBA3E 3'UTR 0.23 TCGA-56-7579-01 2 133540012 133540012 C A NCKAP5 Missense_Mutation p.A1458S 0.38 tolerated(0.73) benign(0.007) TCGA-56-7579-01 2 141819691 141819691 G T LRP1B Missense_Mutation p.L389I 0.04 benign(0.444) TCGA-56-7579-01 2 155295103 155295103 G T GALNT13 Splice_Site p.X466_splice 0.22 TCGA-56-7579-01 2 162807278 162807278 G T SLC4A10 Missense_Mutation p.A821S 0.43 deleterious(0.02) benign(0.147) TCGA-56-7579-01 2 166856265 166856265 C A SCN1A Missense_Mutation p.D1436Y 0.33 deleterious(0) probably_damaging(0.993) TCGA-56-7579-01 2 170055409 170055409 C G LRP2 Missense_Mutation p.C2822S 0.35 probably_damaging(1) TCGA-56-7579-01 2 179170896 179170896 G C OSBPL6 5'UTR 0.34 TCGA-56-7579-01 2 179463965 179463965 C G TTN Missense_Mutation p.G18852A 0.38 TCGA-56-7579-01 2 179477774 179477774 T A TTN Silent p.P16558P 0.45 TCGA-56-7579-01 2 179539836 179539836 A G TTN Silent p.P11514P 0.34 TCGA-56-7579-01 2 179585886 179585886 T G TTN Silent p.A7620A 0.48 TCGA-56-7579-01 2 179611723 179611723 G T TTN Intron 0.30 TCGA-56-7579-01 2 179616489 179616489 T - TTN Intron 0.25 TCGA-56-7579-01 2 179634472 179634472 C G TTN Missense_Mutation p.E2946Q 0.38 TCGA-56-7579-01 2 182542330 182542330 G A NEUROD1 3'UTR 0.10 TCGA-56-7579-01 2 185800636 185800636 T A ZNF804A Silent p.I171I 0.34 TCGA-56-7579-01 2 189875534 189875534 A G COL3A1 Missense_Mutation p.K1391R 0.27 unknown(0) TCGA-56-7579-01 2 197664342 197664342 A T GTF3C3 5'UTR 0.35 TCGA-56-7579-01 2 238449495 238449495 C A MLPH Missense_Mutation p.D447E 0.42 tolerated(0.18) benign(0.027) TCGA-56-7579-01 2 241827957 241827957 G T C2orf54 Silent p.R335R 0.75 TCGA-56-7579-01 2 26667603 26667603 G A DRC1 Missense_Mutation p.D395N 0.45 tolerated(0.37) benign(0.005) TCGA-56-7579-01 2 26805695 26805695 C A CIB4 Missense_Mutation p.M175I 0.39 tolerated(0.32) benign(0.003) TCGA-56-7579-01 2 45236155 45236155 C A SIX2 Missense_Mutation p.R32L 0.27 deleterious(0.02) benign(0.016) TCGA-56-7579-01 2 46985771 46985771 C T SOCS5 Silent p.S34S 0.55 TCGA-56-7579-01 2 50724761 50724761 G T NRXN1 Silent p.S903S 0.27 TCGA-56-7579-01 2 75347842 75347842 T C TACR1 Missense_Mutation p.K148E 0.28 deleterious(0.01) possibly_damaging(0.634) TCGA-56-7579-01 2 85836021 85836021 C T C2orf68 3'UTR 0.27 TCGA-56-7579-01 2 90044356 90044356 G C IGKV2D-24 Missense_Mutation p.G93R 0.33 deleterious(0.02) possibly_damaging(0.676) TCGA-56-7579-01 2 90060972 90060972 T A IGKV6D-21 Missense_Mutation p.C107S 0.33 deleterious(0) probably_damaging(0.962) TCGA-56-7579-01 2 99013192 99013192 A G CNGA3 Missense_Mutation p.Y520C 0.28 deleterious(0) probably_damaging(0.999) TCGA-56-7579-01 3 111261130 111261130 A G CD96 Missense_Mutation p.Y12C 0.17 tolerated(0.1) benign(0.339) TCGA-56-7579-01 3 113295788 113295788 T C SIDT1 Missense_Mutation p.F179L 0.36 tolerated(0.11) possibly_damaging(0.844) TCGA-56-7579-01 3 121363669 121363669 T A HCLS1 Missense_Mutation p.D132V 0.34 deleterious(0) probably_damaging(0.942) TCGA-56-7579-01 3 121437313 121437313 G A GOLGB1 Silent p.H269H 0.34 TCGA-56-7579-01 3 122641273 122641273 C A SEMA5B Missense_Mutation p.G486C 0.19 deleterious(0) probably_damaging(0.997) TCGA-56-7579-01 3 138724477 138724477 G T PRR23A Missense_Mutation p.P212T 0.24 deleterious(0.02) benign(0.112) TCGA-56-7579-01 3 148459587 148459587 C A AGTR1 Silent p.P255P 0.32 TCGA-56-7579-01 3 164733823 164733823 A T SI Missense_Mutation p.F1269I 0.15 deleterious(0) probably_damaging(0.983) TCGA-56-7579-01 3 164780158 164780158 C T SI Splice_Site p.X340_splice 0.07 TCGA-56-7579-01 3 174951954 174951954 T A NAALADL2 Missense_Mutation p.L260H 0.15 deleterious(0) possibly_damaging(0.855) TCGA-56-7579-01 3 180359949 180359949 T G CCDC39 Missense_Mutation p.K569T 0.20 deleterious(0.03) probably_damaging(0.991) TCGA-56-7579-01 3 184002895 184002895 T A ECE2 Splice_Site p.X501_splice 0.12 TCGA-56-7579-01 3 195690254 195690254 C G SDHAP1 RNA 0.11 TCGA-56-7579-01 3 46062809 46062809 T A XCR1 Missense_Mutation p.T211S 0.46 tolerated(0.21) probably_damaging(0.914) TCGA-56-7579-01 3 97720475 97720475 A T GABRR3 RNA 0.22 TCGA-56-7579-01 3 97851618 97851618 C A OR5H1 Missense_Mutation p.P26H 0.37 deleterious(0.04) benign(0.031) TCGA-56-7579-01 3 98241598 98241598 C A CLDND1 Intron 0.24 TCGA-56-7579-01 3 99567474 99567474 G A FILIP1L Nonsense_Mutation p.Q1016* 0.42 TCGA-56-7579-01 4 114213582 114213582 C A ANK2 Missense_Mutation p.T763K 0.26 possibly_damaging(0.716) TCGA-56-7579-01 4 141313826 141313826 G A CLGN Missense_Mutation p.H469Y 0.16 tolerated(0.13) benign(0.001) TCGA-56-7579-01 4 145040920 145040920 C A GYPA Missense_Mutation p.D51Y 0.38 tolerated(0.08) benign(0.059) TCGA-56-7579-01 4 151829553 151829553 G T LRBA Missense_Mutation p.L476I 0.19 deleterious(0.04) probably_damaging(0.99) TCGA-56-7579-01 4 175649839 175649839 A T GLRA3 Missense_Mutation p.V93E 0.13 deleterious(0) benign(0.381) TCGA-56-7579-01 4 176556087 176556087 C T GPM6A Missense_Mutation p.R269H 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-56-7579-01 4 186423491 186423491 G A PDLIM3 Missense_Mutation p.P351L 0.25 deleterious(0) probably_damaging(0.999) TCGA-56-7579-01 4 188924597 188924597 T A ZFP42 Missense_Mutation p.H212Q 0.55 deleterious(0.01) probably_damaging(0.999) TCGA-56-7579-01 4 72425848 72425848 C A SLC4A4 Nonsense_Mutation p.Y992* 0.11 TCGA-56-7579-01 4 77053807 77053807 G C NUP54 Missense_Mutation p.T259R 0.31 deleterious(0.04) benign(0.019) TCGA-56-7579-01 4 79359800 79359800 C G FRAS1 Nonsense_Mutation p.S1765* 0.38 TCGA-56-7579-01 4 94032085 94032085 C T GRID2 Missense_Mutation p.A239V 0.29 tolerated(0.14) benign(0.223) TCGA-56-7579-01 5 115298685 115298685 C T AQPEP Missense_Mutation p.S124F 0.38 tolerated(0.13) benign(0.332) TCGA-56-7579-01 5 13736041 13736041 A G DNAH5 Missense_Mutation p.V3819A 0.38 benign(0.153) TCGA-56-7579-01 5 140431962 140431962 C A PCDHB1 Missense_Mutation p.L303I 0.19 tolerated(0.05) probably_damaging(0.999) TCGA-56-7579-01 5 140516178 140516178 C A PCDHB5 Missense_Mutation p.L388I 0.40 tolerated_low_confidence(0.06) benign(0.068) TCGA-56-7579-01 5 140516180 140516180 C A PCDHB5 Silent p.L388L 0.40 TCGA-56-7579-01 5 140537364 140537364 G A PCDHB17 3'UTR 0.10 TCGA-56-7579-01 5 140720434 140720434 G A PCDHGA2 Silent p.L632L 0.38 TCGA-56-7579-01 5 140731962 140731962 G C PCDHGB1 Missense_Mutation p.R712P 0.21 deleterious(0) probably_damaging(0.914) TCGA-56-7579-01 5 161324225 161324225 G T GABRA1 Missense_Mutation p.A390S 0.44 tolerated(1) probably_damaging(0.992) TCGA-56-7579-01 5 19591354 19591354 C G CDH18 Splice_Site p.X271_splice 0.17 TCGA-56-7579-01 5 33576368 33576368 G A ADAMTS12 Missense_Mutation p.H1255Y 0.30 tolerated(1) benign(0.094) TCGA-56-7579-01 5 33947268 33947268 C A SLC45A2 Missense_Mutation p.E456D 0.39 tolerated(0.26) benign(0.063) TCGA-56-7579-01 5 52366017 52366017 A G ITGA2 Missense_Mutation p.N721S 0.32 tolerated(0.17) benign(0.032) TCGA-56-7579-01 5 76128758 76128758 C T F2RL1 Missense_Mutation p.P109L 0.34 deleterious(0) possibly_damaging(0.844) TCGA-56-7579-01 5 78338252 78338252 G A DMGDH Silent p.I349I 0.29 TCGA-56-7579-01 5 93076488 93076488 C A POU5F2 Missense_Mutation p.R261L 0.26 deleterious(0.02) benign(0) TCGA-56-7579-01 6 133044143 133044143 G A VNN3 3'UTR 0.18 TCGA-56-7579-01 6 150239465 150239465 G A RAET1G Silent p.L229L 0.26 TCGA-56-7579-01 6 152658114 152658114 C T SYNE1 Silent p.Q4130Q 0.29 TCGA-56-7579-01 6 152674425 152674425 C A SYNE1 Missense_Mutation p.M3742I 0.24 benign(0.02) TCGA-56-7579-01 6 152711554 152711554 T A SYNE1 Nonsense_Mutation p.K2680* 0.18 TCGA-56-7579-01 6 168999515 168999515 G C SMOC2 Missense_Mutation p.E230Q 0.30 deleterious(0) probably_damaging(0.962) TCGA-56-7579-01 6 25726432 25726432 G T HIST1H2AA Silent p.V108V 0.04 TCGA-56-7579-01 6 26124010 26124010 G T HIST1H2BC Nonsense_Mutation p.Y41* 0.50 TCGA-56-7579-01 6 29142131 29142131 G C OR2J2 Missense_Mutation p.R240T 0.08 deleterious(0.01) benign(0.023) TCGA-56-7579-01 6 29364859 29364859 T G OR12D2 Missense_Mutation p.L128R 0.57 deleterious(0) probably_damaging(1) TCGA-56-7579-01 6 32810512 32810512 C A PSMB8 Missense_Mutation p.G115V 0.50 deleterious(0) probably_damaging(0.999) TCGA-56-7579-01 6 70859894 70859894 G A COL19A1 Missense_Mutation p.G665E 0.24 deleterious(0) probably_damaging(1) TCGA-56-7579-01 6 7581013 7581175 6:7581013-7581175 - DSP large deletion p.E1532Kfs*16 0.26 TCGA-56-7579-01 7 102948143 102948143 C A PMPCB Missense_Mutation p.F279L 0.43 deleterious(0) possibly_damaging(0.726) TCGA-56-7579-01 7 103216125 103216125 C A RELN Missense_Mutation p.E1391D 0.23 tolerated(0.22) benign(0.002) TCGA-56-7579-01 7 111555851 111555851 G C DOCK4 Nonsense_Mutation p.S392* 0.20 TCGA-56-7579-01 7 117432745 117432745 G A CTTNBP2 Nonsense_Mutation p.Q169* 0.45 TCGA-56-7579-01 7 139416075 139416075 C G HIPK2 Missense_Mutation p.E253D 0.22 deleterious(0) probably_damaging(0.999) TCGA-56-7579-01 7 142032421 142032421 C T TRBV7-1 Missense_Mutation p.R81C 0.52 deleterious(0) possibly_damaging(0.707) TCGA-56-7579-01 7 142448655 142448655 C A TRBV29-1 Silent p.I83I 0.19 TCGA-56-7579-01 7 143748152 143748152 C T OR2A5 Missense_Mutation p.R220C 0.30 tolerated(0.35) benign(0.021) TCGA-56-7579-01 7 143748429 143748429 G A OR2A5 Silent p.%3D 0.25 TCGA-56-7579-01 7 37988458 37988458 T C EPDR1 Silent p.L96L 0.22 TCGA-56-7579-01 7 37990025 37990025 C T EPDR1 3'UTR 0.42 TCGA-56-7579-01 7 40087472 40087472 G T CDK13 Nonsense_Mutation p.E866* 0.20 TCGA-56-7579-01 7 48626823 48626823 G A ABCA13 Missense_Mutation p.G4860E 0.20 probably_damaging(1) TCGA-56-7579-01 7 81381578 81381578 G A HGF Silent p.S161S 0.22 TCGA-56-7579-01 7 88962997 88962997 C T ZNF804B Missense_Mutation p.S234L 0.28 deleterious(0) probably_damaging(0.999) TCGA-56-7579-01 7 94917905 94917905 G A PPP1R9A Missense_Mutation p.E1263K 0.45 deleterious(0.04) probably_damaging(0.999) TCGA-56-7579-01 7 98507920 98507920 G A TRRAP Missense_Mutation p.G531E 0.10 probably_damaging(0.931) TCGA-56-7579-01 7 99091533 99091533 G A ZNF394 Silent p.T435T 0.29 TCGA-56-7579-01 8 13356670 13356670 T C DLC1 Missense_Mutation p.N304S 0.38 tolerated_low_confidence(0.06) possibly_damaging(0.501) TCGA-56-7579-01 8 139890171 139890171 G A COL22A1 Silent p.D160D 0.40 TCGA-56-7579-01 8 143607968 143607968 G T BAI1 Missense_Mutation p.K1126N 0.30 deleterious(0) possibly_damaging(0.728) TCGA-56-7579-01 8 143999028 143999028 G A CYP11B2 Missense_Mutation p.P77S 0.59 deleterious(0.02) possibly_damaging(0.785) TCGA-56-7579-01 8 22273670 22273670 C T SLC39A14 Silent p.L342L 0.48 TCGA-56-7579-01 8 26501029 26501029 G T DPYSL2 Missense_Mutation p.A296S 0.46 tolerated(0.27) benign(0.104) TCGA-56-7579-01 8 2820119 2820119 A T CSMD1 Missense_Mutation p.L3166H 0.32 possibly_damaging(0.646) TCGA-56-7579-01 8 30695036 30695036 C G TEX15 Missense_Mutation p.D2539H 0.54 tolerated(0.07) possibly_damaging(0.562) TCGA-56-7579-01 8 35606100 35606100 C T UNC5D Missense_Mutation p.P608S 0.60 tolerated(0.17) benign(0.042) TCGA-56-7579-01 8 48649953 48649953 G A CEBPD Silent p.L244L 0.32 TCGA-56-7579-01 8 73848430 73848430 C A KCNB2 Silent p.T280T 0.38 TCGA-56-7579-01 8 73849360 73849360 G T KCNB2 Missense_Mutation p.Q590H 0.34 tolerated_low_confidence(0.26) benign(0.005) TCGA-56-7579-01 8 89339533 89339533 G T MMP16 5'UTR 0.33 TCGA-56-7579-01 8 89339534 89339534 G T MMP16 5'UTR 0.32 TCGA-56-7579-01 9 104375731 104375738 CCATGTGA - GRIN3A Frame_Shift_Del p.S896Vfs*7 0.32 TCGA-56-7579-01 9 117027214 117027214 G A COL27A1 Missense_Mutation p.G1087E 0.63 probably_damaging(0.982) TCGA-56-7579-01 9 17786512 17786512 T C SH3GL2 Silent p.D107D 0.38 TCGA-56-7579-01 9 32493808 32493808 G A DDX58 Missense_Mutation p.S125F 0.39 tolerated(0.09) benign(0.104) TCGA-56-7579-01 9 33166791 33166791 G A B4GALT1 Missense_Mutation p.S126L 0.52 tolerated(0.31) benign(0) TCGA-56-7579-01 9 67968526 67968526 A G ANKRD20A1 Silent p.V695V 0.32 TCGA-56-7579-01 9 74860148 74860148 C T GDA Missense_Mutation p.S407F 0.68 deleterious(0) probably_damaging(0.992) TCGA-56-7579-01 9 84609741 84609741 G T SPATA31D1 Missense_Mutation p.E1452D 0.33 tolerated(0.4) benign(0.009) TCGA-56-7579-01 9 90501300 90501300 A T SPATA31E1 Missense_Mutation p.N633I 0.54 tolerated(0.09) benign(0.012) TCGA-56-7579-01 X 100667126 100667126 A G HNRNPH2 Silent p.E50E 0.60 TCGA-56-7579-01 X 153032500 153032500 G T PLXNB3 Missense_Mutation p.R96L 0.83 tolerated(0.63) benign(0.185) TCGA-56-7579-01 X 27766181 27766181 T G DCAF8L2 Missense_Mutation p.F390C 0.38 deleterious(0) probably_damaging(0.987) TCGA-56-7579-01 X 30237457 30237457 C T MAGEB2 Nonsense_Mutation p.Q254* 0.61 TCGA-56-7579-01 X 38240651 38240651 G A OTC Missense_Mutation p.G119S 0.75 deleterious(0) probably_damaging(0.987) TCGA-56-7579-01 X 70093112 70093112 C T TEX11 Missense_Mutation p.G84R 0.61 tolerated(1) benign(0) TCGA-56-7579-01 X 75003869 75003869 G A MAGEE2 Missense_Mutation p.H340Y 0.68 tolerated(0.81) benign(0.396) TCGA-56-7580-01 10 32197700 32197700 C T ARHGAP12 Silent p.K28K 0.38 TCGA-56-7580-01 10 90537823 90537823 G A LIPN Missense_Mutation p.G341S 0.11 deleterious(0) possibly_damaging(0.89) TCGA-56-7580-01 11 107205614 107205614 C A CWF19L2 Missense_Mutation p.R811I 0.39 deleterious(0) probably_damaging(0.998) TCGA-56-7580-01 11 119044264 119044264 A T NLRX1 Silent p.P102P 0.33 TCGA-56-7580-01 11 123893965 123893965 C A OR10G9 Silent p.T82T 0.26 TCGA-56-7580-01 11 123909463 123909463 G T OR10G7 Silent p.T82T 0.15 TCGA-56-7580-01 11 22272297 22272297 T G ANO5 Missense_Mutation p.C342G 0.21 deleterious(0) probably_damaging(0.966) TCGA-56-7580-01 11 55038372 55038372 C A TRIM48 3'UTR 0.30 TCGA-56-7580-01 11 55681891 55681891 G T OR5W2 Missense_Mutation p.H56Q 0.32 tolerated(0.13) benign(0.066) TCGA-56-7580-01 11 56000196 56000196 C A OR5T2 Missense_Mutation p.A156S 0.22 tolerated(0.18) benign(0.391) TCGA-56-7580-01 11 56113836 56113836 G T OR8K1 Missense_Mutation p.A108S 0.32 tolerated_low_confidence(0.12) benign(0.029) TCGA-56-7580-01 11 66581385 66581385 A C C11orf80 Missense_Mutation p.E363A 0.16 deleterious(0.04) possibly_damaging(0.801) TCGA-56-7580-01 11 68157386 68157386 A G LRP5 Missense_Mutation p.I484V 0.28 tolerated(0.14) possibly_damaging(0.896) TCGA-56-7580-01 12 117595733 117595733 C T FBXO21 Missense_Mutation p.D495N 0.23 tolerated(0.49) benign(0.001) TCGA-56-7580-01 12 130833966 130833968 TAG AA PIWIL1 Nonsense_Mutation p.L306* 0.17 TCGA-56-7580-01 12 272686 272686 G T IQSEC3 Silent p.L870L 0.27 TCGA-56-7580-01 12 272687 272687 G T IQSEC3 Missense_Mutation p.V871L 0.27 deleterious(0.01) benign(0) TCGA-56-7580-01 12 72025913 72025913 C A ZFC3H1 Nonsense_Mutation p.E1067* 0.37 TCGA-56-7580-01 13 103445715 103445715 G A KDELC1 Silent p.A216A 0.24 TCGA-56-7580-01 13 103445716 103445716 G C KDELC1 Missense_Mutation p.A216G 0.24 tolerated(0.09) probably_damaging(0.942) TCGA-56-7580-01 13 113832496 113832496 G A PCID2 3'UTR 0.36 TCGA-56-7580-01 13 114009758 114009758 G A GRTP1 Missense_Mutation p.R74C 0.08 deleterious(0) probably_damaging(1) TCGA-56-7580-01 13 114203769 114203769 G A TMCO3 Silent p.T650T 0.26 TCGA-56-7580-01 13 76408444 76408444 A G LMO7 Silent p.S816S 0.18 TCGA-56-7580-01 14 105351851 105351851 T G CEP170B Missense_Mutation p.L639R 0.33 tolerated(0.18) benign(0.242) TCGA-56-7580-01 14 106573518 106573518 C A IGHV3-11 Missense_Mutation p.Q22H 0.25 deleterious_low_confidence(0.01) benign(0.231) TCGA-56-7580-01 14 20248554 20248554 C A OR4M1 Missense_Mutation p.L25I 0.17 tolerated(0.36) benign(0.077) TCGA-56-7580-01 14 21833098 21833098 C A SUPT16H Missense_Mutation p.G374V 0.28 deleterious(0) probably_damaging(0.998) TCGA-56-7580-01 14 42360768 42360768 C A LRFN5 Missense_Mutation p.S567R 0.19 deleterious(0.05) benign(0.035) TCGA-56-7580-01 14 44975202 44975202 G T FSCB Missense_Mutation p.P330H 0.23 deleterious(0.02) probably_damaging(0.935) TCGA-56-7580-01 14 50558311 50558311 G C C14orf183 Missense_Mutation p.T86S 0.27 tolerated_low_confidence(0.15) possibly_damaging(0.486) TCGA-56-7580-01 14 65264473 65264473 C A SPTB Missense_Mutation p.G386W 0.22 deleterious(0) probably_damaging(1) TCGA-56-7580-01 14 69791406 69791406 C T GALNT16 Intron 0.14 TCGA-56-7580-01 14 92909806 92909806 C A SLC24A4 Silent p.I215I 0.22 TCGA-56-7580-01 15 22332546 22332546 G T RP11-69H14.6 RNA 0.21 TCGA-56-7580-01 15 22332547 22332547 G T RP11-69H14.6 RNA 0.22 TCGA-56-7580-01 15 22846893 22846893 G A TUBGCP5 Silent p.L256L 0.32 TCGA-56-7580-01 15 57820872 57820872 G C CGNL1 Missense_Mutation p.E1020D 0.24 tolerated(0.47) benign(0.014) TCGA-56-7580-01 16 1536379 1536379 A T PTX4 Missense_Mutation p.L328Q 0.22 tolerated(0.06) benign(0.339) TCGA-56-7580-01 16 16180720 16180720 C G ABCC1 Missense_Mutation p.L778V 0.17 deleterious(0.02) benign(0.433) TCGA-56-7580-01 16 19562608 19562608 T C CCP110 3'UTR 0.17 TCGA-56-7580-01 16 20352503 20352503 A C UMOD Missense_Mutation p.L496R 0.19 deleterious(0.04) possibly_damaging(0.702) TCGA-56-7580-01 16 30976495 30976495 G T SETD1A Nonsense_Mutation p.E478* 0.26 TCGA-56-7580-01 16 3406401 3406401 G C OR2C1 Missense_Mutation p.G154A 0.38 tolerated(1) benign(0.33) TCGA-56-7580-01 16 49669874 49669874 G C ZNF423 Silent p.L1063L 0.11 TCGA-56-7580-01 16 553022 553022 G C RAB11FIP3 Silent p.G440G 0.18 TCGA-56-7580-01 16 830572 830572 C T MSLNL Silent p.L143L 0.19 TCGA-56-7580-01 16 89779110 89779110 A G VPS9D1 Missense_Mutation p.L149P 0.17 deleterious(0) probably_damaging(0.972) TCGA-56-7580-01 17 10316033 10316033 G A MYH8 Missense_Mutation p.A387V 0.29 tolerated(0.24) benign(0.017) TCGA-56-7580-01 17 2996116 2996116 C T OR1D2 Missense_Mutation p.V59M 0.12 tolerated(1) benign(0) TCGA-56-7580-01 17 33679505 33679505 C T SLFN11 Missense_Mutation p.G859D 0.27 deleterious(0) probably_damaging(1) TCGA-56-7580-01 17 52978178 52978178 C G TOM1L1 5'UTR 0.16 TCGA-56-7580-01 17 53342870 53342870 C A HLF Missense_Mutation p.P9T 0.22 tolerated_low_confidence(0.1) benign(0.326) TCGA-56-7580-01 17 61573762 61573762 G A ACE Missense_Mutation p.V1130I 0.33 tolerated(0.29) benign(0.126) TCGA-56-7580-01 17 72862358 72862358 C A FDXR Silent p.G177G 0.31 TCGA-56-7580-01 17 74383695 74383695 C G SPHK1 3'UTR 0.19 TCGA-56-7580-01 17 7579503 7579503 C A TP53 Nonsense_Mutation p.E62* 0.30 TCGA-56-7580-01 17 9683355 9683355 G C DHRS7C Missense_Mutation p.Q90E 0.15 tolerated(0.37) probably_damaging(0.959) TCGA-56-7580-01 18 77659389 77659389 T G KCNG2 Missense_Mutation p.L325R 0.35 deleterious(0) probably_damaging(1) TCGA-56-7580-01 19 14000291 14000291 C T C19orf57 Missense_Mutation p.E460K 0.16 tolerated(0.15) possibly_damaging(0.81) TCGA-56-7580-01 19 15918611 15918611 C T OR10H1 Silent p.P79P 0.36 TCGA-56-7580-01 19 22847841 22847841 C - ZNF492 Frame_Shift_Del p.A457Vfs*13 0.14 TCGA-56-7580-01 19 33696314 33696314 C T LRP3 Missense_Mutation p.P213L 0.52 deleterious(0.02) possibly_damaging(0.718) TCGA-56-7580-01 19 37677550 37677550 G A ZNF585B Missense_Mutation p.P297S 0.25 deleterious(0.03) possibly_damaging(0.803) TCGA-56-7580-01 19 45284288 45284288 G T CBLC Missense_Mutation p.W160C 0.22 deleterious(0.01) possibly_damaging(0.819) TCGA-56-7580-01 19 47844754 47844754 C G C5AR2 Missense_Mutation p.P233R 0.20 deleterious(0.04) probably_damaging(0.947) TCGA-56-7580-01 19 53793084 53793084 G T BIRC8 Missense_Mutation p.R182S 0.24 deleterious(0.04) benign(0.064) TCGA-56-7580-01 19 57176393 57176393 G A ZNF835 Silent p.S58S 0.17 TCGA-56-7580-01 19 57999346 57999346 G A ZNF419 Missense_Mutation p.A10T 0.40 tolerated(0.14) benign(0) TCGA-56-7580-01 1 109191254 109191254 C G HENMT1 Silent p.L372L 0.09 TCGA-56-7580-01 1 162324990 162324990 T A NOS1AP Silent p.T203T 0.23 TCGA-56-7580-01 1 207697186 207697186 C T CR1 Missense_Mutation p.P240S 0.14 tolerated(0.39) possibly_damaging(0.629) TCGA-56-7580-01 1 21014091 21014091 G T KIF17 Missense_Mutation p.F576L 0.44 tolerated_low_confidence(0.35) benign(0.002) TCGA-56-7580-01 1 229738112 229738112 C G TAF5L Missense_Mutation p.E268Q 0.14 tolerated(0.37) benign(0.046) TCGA-56-7580-01 1 236924408 236924408 G T ACTN2 Nonsense_Mutation p.E821* 0.32 TCGA-56-7580-01 1 237946993 237946993 C T RYR2 Missense_Mutation p.T3994M 0.19 probably_damaging(0.921) TCGA-56-7580-01 1 248845320 248845320 C T OR14I1 Missense_Mutation p.V96M 0.21 tolerated(0.05) benign(0.291) TCGA-56-7580-01 1 27106324 27106324 A T ARID1A Nonsense_Mutation p.K1979* 0.50 TCGA-56-7580-01 1 33116183 33116183 C A ZBTB8OS 5'UTR 0.36 TCGA-56-7580-01 1 46158947 46158947 C G TMEM69 Silent p.L38L 0.30 TCGA-56-7580-01 1 67208794 67208794 G A SGIP1 3'UTR 0.37 TCGA-56-7580-01 1 93812142 93812142 G C DR1 5'UTR 0.47 TCGA-56-7580-01 22 16267006 16267006 A T POTEH Missense_Mutation p.D481E 0.05 tolerated_low_confidence(0.12) benign(0.08) TCGA-56-7580-01 22 32275639 32275639 C G DEPDC5 Missense_Mutation p.L1303V 0.11 deleterious(0.02) benign(0.405) TCGA-56-7580-01 22 46752809 46752819 ACACGCTCCAG - TRMU Frame_Shift_Del p.Y391* 0.73 TCGA-56-7580-01 22 50659081 50659081 C T TUBGCP6 Missense_Mutation p.R1236Q 0.08 tolerated(0.46) possibly_damaging(0.553) TCGA-56-7580-01 2 10192513 10192513 C G KLF11 Missense_Mutation p.A473G 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-56-7580-01 2 136033311 136033311 C G ZRANB3 Missense_Mutation p.K327N 0.20 deleterious(0) possibly_damaging(0.623) TCGA-56-7580-01 2 166198888 166198888 A G SCN2A Missense_Mutation p.N824S 0.32 deleterious(0.01) possibly_damaging(0.702) TCGA-56-7580-01 2 166210904 166210904 C T SCN2A Missense_Mutation p.P1041L 0.20 deleterious(0.03) benign(0.065) TCGA-56-7580-01 2 166245512 166245512 C G SCN2A Missense_Mutation p.D1732E 0.24 deleterious(0) possibly_damaging(0.482) TCGA-56-7580-01 2 169716067 169716067 T C NOSTRIN Missense_Mutation p.S424P 0.35 deleterious(0.03) possibly_damaging(0.772) TCGA-56-7580-01 2 179397919 179397919 T C TTN Missense_Mutation p.K34475E 0.13 TCGA-56-7580-01 2 179598469 179598469 A G TTN Missense_Mutation p.M5216T 0.11 TCGA-56-7580-01 2 179669310 179669310 A T TTN Silent p.G20G 0.11 TCGA-56-7580-01 2 20886742 20886742 T C C2orf43 Missense_Mutation p.H300R 0.08 deleterious(0) probably_damaging(1) TCGA-56-7580-01 2 212812172 212812172 C T ERBB4 Missense_Mutation p.G135E 0.12 tolerated(0.99) possibly_damaging(0.655) TCGA-56-7580-01 2 228882536 228882536 C T SPHKAP Missense_Mutation p.E1012K 0.34 deleterious(0) probably_damaging(0.999) TCGA-56-7580-01 2 238285756 238285756 G A COL6A3 Missense_Mutation p.T910M 0.26 possibly_damaging(0.611) TCGA-56-7580-01 2 38542445 38542445 T C ATL2 Missense_Mutation p.D212G 0.32 deleterious(0) probably_damaging(0.972) TCGA-56-7580-01 2 56420227 56420227 C A CCDC85A Missense_Mutation p.P298T 0.11 tolerated_low_confidence(0.2) benign(0.001) TCGA-56-7580-01 2 64120529 64120529 T C VPS54 3'UTR 0.29 TCGA-56-7580-01 2 89976471 89976471 G T IGKV2D-30 Missense_Mutation p.M114I 0.20 tolerated(0.39) benign(0.016) TCGA-56-7580-01 2 90248931 90248931 G T IGKV1D-43 Missense_Mutation p.R4S 0.22 deleterious(0.05) benign(0.131) TCGA-56-7580-01 2 97405620 97405620 C A LMAN2L Missense_Mutation p.R53L 0.24 deleterious(0) possibly_damaging(0.822) TCGA-56-7580-01 3 113594333 113594333 T G GRAMD1C Missense_Mutation p.Y88D 0.17 deleterious(0.01) possibly_damaging(0.876) TCGA-56-7580-01 3 115805352 115805352 G T LSAMP Silent p.G69G 0.09 TCGA-56-7580-01 3 119445149 119445149 G T MAATS1 Nonsense_Mutation p.E272* 0.42 TCGA-56-7580-01 3 119445150 119445150 A T MAATS1 Missense_Mutation p.E272V 0.41 tolerated(0.05) benign(0.093) TCGA-56-7580-01 3 137484361 137484361 G T SOX14 3'UTR 0.24 TCGA-56-7580-01 3 137958318 137958318 A G ARMC8 Missense_Mutation p.Y248C 0.31 deleterious(0.04) possibly_damaging(0.86) TCGA-56-7580-01 3 183217537 183217537 C T KLHL6 Missense_Mutation p.D330N 0.24 tolerated(0.32) benign(0.041) TCGA-56-7580-01 3 197501072 197501072 G A FYTTD1 Missense_Mutation p.R216K 0.30 tolerated(0.07) probably_damaging(0.996) TCGA-56-7580-01 3 33415173 33415173 C T FBXL2 Silent p.L187L 0.16 TCGA-56-7580-01 3 67053655 67053655 A G KBTBD8 Silent p.Q88Q 0.20 TCGA-56-7580-01 3 71027182 71027182 T C FOXP1 Splice_Site p.X385_splice 0.36 TCGA-56-7580-01 3 93605255 93605255 C A PROS1 Silent p.P416P 0.13 TCGA-56-7580-01 4 103528460 103528460 G T NFKB1 Missense_Mutation p.G703V 0.29 tolerated(0.06) possibly_damaging(0.596) TCGA-56-7580-01 4 134073447 134073447 C T PCDH10 Missense_Mutation p.L718F 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-56-7580-01 4 147724713 147724713 A G TTC29 Missense_Mutation p.M409T 0.31 deleterious(0) benign(0.146) TCGA-56-7580-01 4 16504391 16504391 C A LDB2 Missense_Mutation p.G333C 0.28 deleterious(0.04) benign(0.055) TCGA-56-7580-01 4 178352876 178352876 C A AGA Missense_Mutation p.V343L 0.13 deleterious(0) benign(0.402) TCGA-56-7580-01 4 22475406 22475406 G T GPR125 Silent p.L106L 0.18 TCGA-56-7580-01 4 42583729 42583729 T A ATP8A1 Missense_Mutation p.D248V 0.26 deleterious(0) probably_damaging(0.999) TCGA-56-7580-01 4 46737099 46737099 T C COX7B2 Silent p.K37K 0.20 TCGA-56-7580-01 4 55598124 55598124 A G KIT Missense_Mutation p.Y774C 0.22 deleterious(0) probably_damaging(0.99) TCGA-56-7580-01 4 62849106 62849106 C G LPHN3 Silent p.A939A 0.07 TCGA-56-7580-01 4 69433790 69433790 A T UGT2B17 Missense_Mutation p.M138K 0.27 deleterious(0) probably_damaging(0.914) TCGA-56-7580-01 5 139889658 139889658 A T ANKHD1 Silent p.A1332A 0.27 TCGA-56-7580-01 5 140208403 140208403 G A PCDHA6 Missense_Mutation p.E243K 0.33 deleterious_low_confidence(0.01) benign(0.091) TCGA-56-7580-01 5 140792887 140792887 G A PCDHGA10 Missense_Mutation p.V49M 0.31 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-56-7580-01 5 140793198 140793198 G T PCDHGA10 Silent p.A152A 0.43 TCGA-56-7580-01 5 157178495 157178495 C A LSM11 Silent p.V182V 0.29 TCGA-56-7580-01 5 161522568 161522568 G A GABRG2 Missense_Mutation p.M109I 0.40 deleterious(0.01) possibly_damaging(0.73) TCGA-56-7580-01 5 169129410 169129410 G A DOCK2 Silent p.A454A 0.19 TCGA-56-7580-01 5 169454896 169454896 C A DOCK2 Missense_Mutation p.D1137E 0.25 deleterious(0) probably_damaging(0.993) TCGA-56-7580-01 5 169454897 169454897 C A DOCK2 Missense_Mutation p.H1138N 0.24 tolerated(0.17) benign(0.168) TCGA-56-7580-01 5 170736758 170736758 G A TLX3 Missense_Mutation p.S130N 0.11 tolerated(0.07) benign(0.004) TCGA-56-7580-01 5 19473246 19473246 C A CDH18 3'UTR 0.18 TCGA-56-7580-01 5 26902839 26902839 C G CDH9 Splice_Site p.X334_splice 0.27 TCGA-56-7580-01 5 35039479 35039479 G C AGXT2 Nonsense_Mutation p.Y104* 0.12 TCGA-56-7580-01 5 72348291 72348291 T G FCHO2 Nonsense_Mutation p.L377* 0.46 TCGA-56-7580-01 5 9043001 9043001 G T SEMA5A 3'UTR 0.10 TCGA-56-7580-01 6 114378992 114378992 G T HS3ST5 Missense_Mutation p.P157Q 0.25 deleterious(0) probably_damaging(1) TCGA-56-7580-01 6 127899917 127899917 G T C6orf58 Missense_Mutation p.D130Y 0.22 tolerated(0.07) probably_damaging(0.994) TCGA-56-7580-01 6 127899918 127899918 G T C6orf58 Splice_Site p.X130_splice 0.22 TCGA-56-7580-01 6 129748968 129748968 C T LAMA2 Silent p.N1979N 0.27 TCGA-56-7580-01 6 161470832 161470832 G C MAP3K4 Missense_Mutation p.D510H 0.30 deleterious(0.04) possibly_damaging(0.602) TCGA-56-7580-01 6 38754697 38754697 G T DNAH8 Missense_Mutation p.S634I 0.18 benign(0.051) TCGA-56-7580-01 6 39847166 39847166 C A DAAM2 Nonsense_Mutation p.Y586* 0.23 TCGA-56-7580-01 6 66205354 66205354 G A EYS 5'UTR 0.25 TCGA-56-7580-01 7 102953019 102953029 TTTCTTGGCTC - DNAJC2 Frame_Shift_Del p.R618Mfs*11 0.11 TCGA-56-7580-01 7 107698355 107698355 A G LAMB4 Missense_Mutation p.C1101R 0.12 deleterious(0) probably_damaging(1) TCGA-56-7580-01 7 113519735 113519735 T C PPP1R3A Missense_Mutation p.E471G 0.15 deleterious(0.04) benign(0.183) TCGA-56-7580-01 7 116960779 116960779 T A WNT2 Missense_Mutation p.Q51L 0.35 deleterious(0) probably_damaging(0.988) TCGA-56-7580-01 7 127251187 127251187 G T PAX4 Missense_Mutation p.H321Q 0.20 tolerated_low_confidence(0.08) benign(0) TCGA-56-7580-01 7 139258126 139258126 G A HIPK2 Silent p.T1048T 0.24 TCGA-56-7580-01 7 150174716 150174716 G A GIMAP8 Missense_Mutation p.A616T 0.26 tolerated(0.54) benign(0.02) TCGA-56-7580-01 7 23871844 23871844 G C STK31 Missense_Mutation p.L973F 0.31 deleterious(0.02) probably_damaging(0.95) TCGA-56-7580-01 7 42974565 42974565 G T MRPL32 Missense_Mutation p.A48S 0.19 deleterious(0.02) benign(0.383) TCGA-56-7580-01 7 64167047 64167047 A G ZNF107 Missense_Mutation p.H122R 0.14 deleterious(0.01) possibly_damaging(0.562) TCGA-56-7580-01 7 91714205 91714205 G A AKAP9 Missense_Mutation p.R2928Q 0.23 benign(0.007) TCGA-56-7580-01 7 92848609 92848609 A G HEPACAM2 Missense_Mutation p.Y79H 0.14 deleterious(0.02) probably_damaging(0.992) TCGA-56-7580-01 8 121222026 121222026 G C COL14A1 Silent p.L451L 0.18 TCGA-56-7580-01 8 134145856 134145856 G T TG Missense_Mutation p.D2714Y 0.27 deleterious(0) benign(0.185) TCGA-56-7580-01 8 139263134 139263134 G T FAM135B Silent p.I164I 0.24 TCGA-56-7580-01 9 107593251 107593251 C G ABCA1 Missense_Mutation p.G616A 0.31 deleterious(0.01) possibly_damaging(0.525) TCGA-56-7580-01 9 117205 117205 C A FOXD4 Missense_Mutation p.R305S 0.40 tolerated(0.46) benign(0.001) TCGA-56-7580-01 X 106808145 106808145 T C FRMPD3 Missense_Mutation p.L415P 0.50 deleterious(0) probably_damaging(0.999) TCGA-56-7580-01 X 111025274 111025274 G C TRPC5 Missense_Mutation p.I663M 0.48 tolerated(0.12) possibly_damaging(0.89) TCGA-56-7580-01 X 125686615 125686615 C A DCAF12L1 5'UTR 0.60 TCGA-56-7580-01 X 19587259 19587259 A G SH3KBP1 Missense_Mutation p.I449T 0.28 tolerated(0.97) benign(0.002) TCGA-56-7580-01 X 73961211 73961211 C A KIAA2022 Missense_Mutation p.D1061Y 0.55 deleterious(0) probably_damaging(1) TCGA-56-7580-01 X 78618162 78618162 C T ITM2A Silent p.L156L 0.59 TCGA-56-7580-01 X 85211367 85211367 T C CHM Silent p.T319T 0.80 TCGA-56-7582-01 10 102685804 102685804 A C FAM178A Intron 0.68 TCGA-56-7582-01 10 104160448 104160448 G T NFKB2 Missense_Mutation p.S612I 0.67 deleterious(0) probably_damaging(0.981) TCGA-56-7582-01 11 128426285 128426285 C G ETS1 Missense_Mutation p.G39R 0.30 tolerated_low_confidence(0.11) benign(0.001) TCGA-56-7582-01 11 20673930 20673930 C A SLC6A5 Silent p.L722L 0.85 TCGA-56-7582-01 11 44626970 44626970 C A CD82 Missense_Mutation p.N109K 0.73 tolerated(0.06) benign(0.033) TCGA-56-7582-01 11 46831402 46831402 C A CKAP5 Missense_Mutation p.W218L 0.47 deleterious(0.01) probably_damaging(0.998) TCGA-56-7582-01 11 55340364 55340364 T C OR4C16 Missense_Mutation p.F254S 0.43 deleterious(0) probably_damaging(1) TCGA-56-7582-01 11 56128556 56128556 T A OR8J1 Missense_Mutation p.F278L 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-56-7582-01 11 60291404 60291404 C G MS4A13 Missense_Mutation p.T55R 0.11 deleterious(0.01) possibly_damaging(0.711) TCGA-56-7582-01 11 62294413 62294413 G - AHNAK Frame_Shift_Del p.V2494Lfs*3 0.44 TCGA-56-7582-01 11 6816789 6816789 T C OR6A2 Missense_Mutation p.R51G 0.75 tolerated(0.34) benign(0.066) TCGA-56-7582-01 11 93808488 93808488 C T HEPHL1 Silent p.S551S 0.74 TCGA-56-7582-01 11 9549151 9549151 G T ZNF143 Missense_Mutation p.L636F 0.64 deleterious_low_confidence(0.01) benign(0.19) TCGA-56-7582-01 11 95825103 95825103 G A MAML2 Nonsense_Mutation p.Q698* 0.71 TCGA-56-7582-01 12 101514374 101514374 G T ANO4 Missense_Mutation p.A848S 0.28 deleterious(0) probably_damaging(0.999) TCGA-56-7582-01 12 120198824 120198824 G A CIT Silent p.D780D 0.28 TCGA-56-7582-01 12 123738312 123738312 T G C12orf65 Missense_Mutation p.L31V 0.35 tolerated(0.11) benign(0.226) TCGA-56-7582-01 12 40668681 40668681 T C LRRK2 Silent p.L609L 0.36 TCGA-56-7582-01 12 52183074 52183074 C A SCN8A Missense_Mutation p.Q1431K 0.20 deleterious(0) probably_damaging(0.932) TCGA-56-7582-01 12 58126724 58126724 C T AGAP2 Missense_Mutation p.A530T 0.37 tolerated(0.15) benign(0.106) TCGA-56-7582-01 12 71918258 71918258 G T LGR5 Splice_Site p.X119_splice 0.47 TCGA-56-7582-01 12 78362393 78362393 G A NAV3 Silent p.Q194Q 0.38 TCGA-56-7582-01 12 8990138 8990138 C A A2ML1 Missense_Mutation p.D277E 0.37 tolerated(0.05) benign(0.008) TCGA-56-7582-01 12 99548320 99548320 T C ANKS1B Intron 0.33 TCGA-56-7582-01 13 31897935 31897935 G A B3GALTL Missense_Mutation p.C411Y 0.18 deleterious(0.04) probably_damaging(0.927) TCGA-56-7582-01 14 22133410 22133410 G T OR4E2 Silent p.T38T 0.56 TCGA-56-7582-01 14 22192512 22192512 A G TRAV3 Missense_Mutation p.K96R 0.46 tolerated(1) benign(0.003) TCGA-56-7582-01 14 35270331 35270331 T A BAZ1A Missense_Mutation p.K310N 0.67 deleterious(0.04) benign(0.403) TCGA-56-7582-01 14 38724299 38724299 G T CLEC14A Missense_Mutation p.A310E 0.25 tolerated(0.14) benign(0.009) TCGA-56-7582-01 14 44973754 44973754 C T FSCB Missense_Mutation p.V813I 0.41 deleterious(0.04) unknown(0) TCGA-56-7582-01 14 55455789 55455789 C T WDHD1 Missense_Mutation p.E495K 0.06 deleterious(0.01) benign(0.231) TCGA-56-7582-01 14 59113341 59113341 C G DACT1 Missense_Mutation p.A667G 0.31 tolerated(0.12) probably_damaging(0.998) TCGA-56-7582-01 14 62542106 62542106 A G SYT16 Silent p.P330P 0.58 TCGA-56-7582-01 14 81943464 81943464 T G SEL1L Missense_Mutation p.Y746S 0.47 deleterious(0) probably_damaging(0.987) TCGA-56-7582-01 14 81964818 81964818 G C SEL1L Silent p.G304G 0.53 TCGA-56-7582-01 15 41371957 41371957 C T INO80 Missense_Mutation p.R358H 0.38 deleterious(0) probably_damaging(0.966) TCGA-56-7582-01 15 64972980 64972980 C T ZNF609 Missense_Mutation p.R1361C 0.08 deleterious(0) probably_damaging(0.96) TCGA-56-7582-01 15 69006280 69006280 A T CORO2B Missense_Mutation p.N222I 0.47 deleterious(0) benign(0.067) TCGA-56-7582-01 15 81605630 81605630 G C STARD5 Missense_Mutation p.N203K 0.37 tolerated(0.05) possibly_damaging(0.727) TCGA-56-7582-01 15 99472818 99472818 C T IGF1R Silent p.I938I 0.12 TCGA-56-7582-01 16 11830001 11830001 G A TXNDC11 Silent p.L115L 0.52 TCGA-56-7582-01 16 19451716 19451716 A G TMC5 Missense_Mutation p.H119R 0.04 tolerated_low_confidence(0.28) benign(0.001) TCGA-56-7582-01 16 23541128 23541128 G A EARS2 Silent p.C386C 0.22 TCGA-56-7582-01 16 24578562 24578562 C T RBBP6 Missense_Mutation p.P563L 0.26 tolerated_low_confidence(0.13) possibly_damaging(0.713) TCGA-56-7582-01 16 29115366 29115366 T G CTB-134H23.3 RNA 0.38 TCGA-56-7582-01 16 51175083 51175083 G T SALL1 Silent p.T350T 0.40 TCGA-56-7582-01 16 55530868 55530868 C A MMP2 Missense_Mutation p.D501E 0.25 tolerated(0.54) benign(0) TCGA-56-7582-01 16 69922021 69922021 G C WWP2 Missense_Mutation p.L261F 0.03 tolerated(0.09) benign(0.033) TCGA-56-7582-01 16 72829327 72829327 G C ZFHX3 Silent p.T2418T 0.28 TCGA-56-7582-01 17 11795139 11795139 G A DNAH9 Missense_Mutation p.D3720N 0.79 benign(0.003) TCGA-56-7582-01 17 12905669 12905669 C A ELAC2 Missense_Mutation p.G409V 0.80 tolerated(0.27) benign(0.006) TCGA-56-7582-01 17 29663350 29663350 G T NF1 Splice_Site p.X2003_splice 0.46 TCGA-56-7582-01 17 41597610 41597610 G A DHX8 Missense_Mutation p.G971D 0.40 deleterious(0) probably_damaging(0.998) TCGA-56-7582-01 17 47102985 47102985 G A IGF2BP1 Missense_Mutation p.R81Q 0.10 deleterious(0.02) possibly_damaging(0.769) TCGA-56-7582-01 17 48696086 48696086 C A CACNA1G Missense_Mutation p.S1833Y 0.44 deleterious(0) probably_damaging(1) TCGA-56-7582-01 17 55962817 55962817 G A CUEDC1 Missense_Mutation p.R37W 0.47 deleterious_low_confidence(0) probably_damaging(1) TCGA-56-7582-01 17 66416337 66416337 C T ARSG Silent p.A437A 0.40 TCGA-56-7582-01 17 66883487 66883487 T C ABCA8 Missense_Mutation p.H1062R 0.40 tolerated(0.35) benign(0) TCGA-56-7582-01 17 7256735 7256735 G T KCTD11 Missense_Mutation p.E158D 0.79 tolerated(0.42) probably_damaging(0.978) TCGA-56-7582-01 17 74287963 74287963 G T QRICH2 Missense_Mutation p.H783N 0.40 tolerated(0.54) benign(0.104) TCGA-56-7582-01 17 7576852 7576852 C T TP53 Splice_Site p.X331_splice 0.74 TCGA-56-7582-01 18 14752599 14752599 G A ANKRD30B Missense_Mutation p.A86T 0.23 tolerated(0.1) benign(0.236) TCGA-56-7582-01 18 43526709 43526709 T A EPG5 Missense_Mutation p.M533L 0.57 tolerated(0.14) possibly_damaging(0.455) TCGA-56-7582-01 18 5395089 5395089 C T EPB41L3 Missense_Mutation p.D1044N 0.23 deleterious(0) probably_damaging(1) TCGA-56-7582-01 18 5395090 5395090 C A EPB41L3 Silent p.G1043G 0.24 TCGA-56-7582-01 19 15375526 15375526 C T BRD4 Missense_Mutation p.D301N 0.15 possibly_damaging(0.539) TCGA-56-7582-01 19 16964996 16964996 C T SIN3B Missense_Mutation p.L328F 0.38 deleterious(0) probably_damaging(0.996) TCGA-56-7582-01 19 23544858 23544858 G T ZNF91 Missense_Mutation p.T308N 0.16 tolerated(0.73) benign(0.002) TCGA-56-7582-01 19 38126667 38126667 G T ZFP30 Missense_Mutation p.L259I 0.43 tolerated(0.27) probably_damaging(0.996) TCGA-56-7582-01 19 44223605 44223605 C A IRGC Missense_Mutation p.R299S 0.28 tolerated(0.52) benign(0.349) TCGA-56-7582-01 19 47774870 47774870 C G CCDC9 Missense_Mutation p.P511A 0.24 deleterious(0.01) unknown(0) TCGA-56-7582-01 19 48601404 48601404 C T PLA2G4C Missense_Mutation p.R197K 0.37 tolerated(1) benign(0.001) TCGA-56-7582-01 19 49868820 49868820 G A DKKL1 Missense_Mutation p.G80S 0.37 tolerated_low_confidence(0.45) benign(0.061) TCGA-56-7582-01 19 49940054 49940054 G C SLC17A7 Missense_Mutation p.L23V 0.14 tolerated(0.23) benign(0.009) TCGA-56-7582-01 19 50204793 50204793 T A CPT1C Missense_Mutation p.F199I 0.33 deleterious(0) benign(0.322) TCGA-56-7582-01 19 50462023 50462023 G T SIGLEC11 Missense_Mutation p.Q414K 0.41 tolerated(0.26) benign(0.117) TCGA-56-7582-01 19 51537928 51537928 C A KLK12 Intron 0.45 TCGA-56-7582-01 19 52507115 52507115 T C ZNF615 5'UTR 0.30 TCGA-56-7582-01 19 53668877 53668877 G A ZNF665 Missense_Mutation p.P289L 0.15 deleterious(0.03) probably_damaging(0.995) TCGA-56-7582-01 19 56701632 56701632 G A ZSCAN5B Missense_Mutation p.A351V 0.17 tolerated(0.1) possibly_damaging(0.601) TCGA-56-7582-01 19 8651324 8651324 G A ADAMTS10 Missense_Mutation p.R812C 0.36 deleterious(0.01) possibly_damaging(0.851) TCGA-56-7582-01 1 100524232 100524232 A G HIAT1 Missense_Mutation p.E64G 0.20 tolerated(0.05) probably_damaging(0.992) TCGA-56-7582-01 1 103496710 103496710 G C COL11A1 Missense_Mutation p.P248A 0.26 probably_damaging(0.94) TCGA-56-7582-01 1 109742777 109742777 C A KIAA1324 Missense_Mutation p.L909M 0.40 deleterious(0.03) probably_damaging(0.998) TCGA-56-7582-01 1 12327051 12327051 C G VPS13D Missense_Mutation p.L570V 0.46 possibly_damaging(0.603) TCGA-56-7582-01 1 152278533 152278533 A T FLG Silent p.S2943S 0.08 TCGA-56-7582-01 1 165513748 165513748 A G LRRC52 Missense_Mutation p.H72R 0.31 tolerated(0.25) benign(0) TCGA-56-7582-01 1 165876966 165876966 G T UCK2 Missense_Mutation p.G231V 0.39 deleterious(0.05) probably_damaging(0.998) TCGA-56-7582-01 1 169511786 169511786 G A F5 Missense_Mutation p.R848C 0.17 tolerated(0.1) benign(0.398) TCGA-56-7582-01 1 17033872 17033872 G A ESPNP RNA 0.33 TCGA-56-7582-01 1 207041883 207041883 C T IL20 Silent p.L169L 0.30 TCGA-56-7582-01 1 210001362 210001362 G T DIEXF 5'UTR 0.44 TCGA-56-7582-01 1 214811216 214811216 A G CENPF Missense_Mutation p.K485R 0.39 possibly_damaging(0.599) TCGA-56-7582-01 1 226789836 226789836 A G C1orf95 3'UTR 0.56 TCGA-56-7582-01 1 234743571 234743571 G A IRF2BP2 Missense_Mutation p.P359L 0.16 deleterious(0.01) probably_damaging(0.981) TCGA-56-7582-01 1 243328336 243328336 C T CEP170 Missense_Mutation p.V976I 0.21 tolerated_low_confidence(0.12) benign(0.005) TCGA-56-7582-01 1 24645917 24645917 C T GRHL3 5'UTR 0.75 TCGA-56-7582-01 1 248813922 248813922 G C OR2T27 Missense_Mutation p.S88R 0.16 deleterious(0.01) benign(0.042) TCGA-56-7582-01 1 27943514 27943514 G A FGR Missense_Mutation p.A179V 0.29 deleterious(0.02) probably_damaging(0.912) TCGA-56-7582-01 1 39877747 39877747 C T KIAA0754 Silent p.L468L 0.18 TCGA-56-7582-01 1 9778818 9778818 G C PIK3CD Missense_Mutation p.V363L 0.16 tolerated(0.14) probably_damaging(0.974) TCGA-56-7582-01 1 99167372 99167372 G T SNX7 Splice_Site p.X347_splice 0.26 TCGA-56-7582-01 20 30432740 30432740 G A FOXS1 Silent p.C202C 0.25 TCGA-56-7582-01 20 30689336 30689336 G A HCK 3'UTR 0.31 TCGA-56-7582-01 20 37581065 37581065 C A FAM83D Missense_Mutation p.L584I 0.05 tolerated(0.33) benign(0.002) TCGA-56-7582-01 20 43385575 43385575 C T RIMS4 Silent p.L186L 0.34 TCGA-56-7582-01 20 48699372 48699372 C T UBE2V1 Missense_Mutation p.R149H 0.40 tolerated(0.12) benign(0.016) TCGA-56-7582-01 20 826366 826366 C T FAM110A 3'UTR 0.46 TCGA-56-7582-01 21 18966446 18966446 G C BTG3 Missense_Mutation p.H286D 0.55 deleterious(0) possibly_damaging(0.74) TCGA-56-7582-01 22 17669247 17669247 A T CECR1 Missense_Mutation p.F355I 0.25 deleterious(0) probably_damaging(0.983) TCGA-56-7582-01 22 23243487 23243487 T C IGLC2 3'UTR 0.24 TCGA-56-7582-01 22 24628930 24628930 G A GGT5 Missense_Mutation p.R153C 0.55 deleterious(0) probably_damaging(1) TCGA-56-7582-01 22 26422619 26422619 C T MYO18B Missense_Mutation p.P2227S 0.19 tolerated(0.9) benign(0.004) TCGA-56-7582-01 22 26860352 26860352 G A HPS4 Missense_Mutation p.T415M 0.19 tolerated(0.12) benign(0.002) TCGA-56-7582-01 22 36123159 36123159 G T APOL5 Silent p.R348R 0.22 TCGA-56-7582-01 22 43010827 43010827 G T POLDIP3 Missense_Mutation p.R13S 0.23 deleterious(0) probably_damaging(0.975) TCGA-56-7582-01 22 43206877 43206877 T C ARFGAP3 Missense_Mutation p.K380E 0.26 tolerated(0.66) benign(0.371) TCGA-56-7582-01 22 50943740 50943740 G A LMF2 Nonsense_Mutation p.Q359* 0.63 TCGA-56-7582-01 2 128480570 128480570 G A WDR33 Missense_Mutation p.P447L 0.22 deleterious(0.01) unknown(0) TCGA-56-7582-01 2 130832238 130832238 A T POTEF Missense_Mutation p.L936Q 0.29 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-56-7582-01 2 136575243 136575243 G A LCT Missense_Mutation p.R459W 0.29 deleterious(0) probably_damaging(0.999) TCGA-56-7582-01 2 141356335 141356335 A G LRP1B Silent p.N2353N 0.48 TCGA-56-7582-01 2 163031450 163031450 C A FAP Silent p.L632L 0.33 TCGA-56-7582-01 2 178098973 178098973 C A NFE2L2 Missense_Mutation p.W24C 0.51 deleterious(0) probably_damaging(1) TCGA-56-7582-01 2 179411351 179411351 G T TTN Missense_Mutation p.P31602T 0.44 TCGA-56-7582-01 2 196759839 196759839 G A DNAH7 Missense_Mutation p.A1586V 0.44 deleterious(0.02) benign(0.017) TCGA-56-7582-01 2 201756923 201756923 C A NIF3L1 Missense_Mutation p.A86E 0.70 deleterious(0) probably_damaging(0.939) TCGA-56-7582-01 2 20189002 20189002 C - WDR35 Frame_Shift_Del p.W22* 0.10 TCGA-56-7582-01 2 21232744 21232744 C A APOB Missense_Mutation p.E2332D 0.41 benign(0.017) TCGA-56-7582-01 2 21257685 21257685 T C APOB Intron 0.34 TCGA-56-7582-01 2 226447104 226447104 C T NYAP2 Missense_Mutation p.P324L 0.34 deleterious(0) possibly_damaging(0.704) TCGA-56-7582-01 2 228883577 228883577 T A SPHKAP Missense_Mutation p.N665Y 0.74 deleterious(0) possibly_damaging(0.707) TCGA-56-7582-01 2 65296828 65296828 A G CEP68 Missense_Mutation p.S84G 0.28 tolerated(0.23) benign(0.108) TCGA-56-7582-01 2 75112657 75112657 T A HK2 Missense_Mutation p.S626T 0.43 tolerated(0.65) benign(0.004) TCGA-56-7582-01 2 80530605 80530605 G - LRRTM1 Frame_Shift_Del p.R114Efs*7 0.22 TCGA-56-7582-01 2 89544448 89544448 T A IGKV2-30 Missense_Mutation p.N59I 0.26 tolerated(0.08) benign(0.271) TCGA-56-7582-01 2 90192981 90192981 C A IGKV1D-13 Missense_Mutation p.L12I 0.24 tolerated(0.09) probably_damaging(0.955) TCGA-56-7582-01 2 90260033 90260033 C T IGKV1D-8 Missense_Mutation p.R46W 0.26 deleterious(0.04) benign(0.106) TCGA-56-7582-01 3 100617610 100617610 C A ABI3BP Missense_Mutation p.D160Y 0.09 deleterious(0) possibly_damaging(0.861) TCGA-56-7582-01 3 113207823 113207823 G A SPICE1 Silent p.L194L 0.12 TCGA-56-7582-01 3 122255822 122255822 G T PARP9 Missense_Mutation p.Q657K 0.40 tolerated(0.38) benign(0.013) TCGA-56-7582-01 3 123634519 123634519 C T CCDC14 Missense_Mutation p.D616N 0.35 deleterious(0) possibly_damaging(0.908) TCGA-56-7582-01 3 128976704 128976704 G A COPG1 Splice_Site p.X291_splice 0.31 TCGA-56-7582-01 3 133166195 133166195 T C BFSP2 Missense_Mutation p.M175T 0.42 tolerated(0.14) benign(0.038) TCGA-56-7582-01 3 133930399 133930399 G A RYK Missense_Mutation p.P134L 0.17 deleterious(0) probably_damaging(0.999) TCGA-56-7582-01 3 138669106 138669106 G A C3orf72 Splice_Site p.X74_splice 0.31 TCGA-56-7582-01 3 157816020 157816020 C T SHOX2 Silent p.L288L 0.13 TCGA-56-7582-01 3 184073198 184073198 G A CLCN2 Silent p.N430N 0.28 TCGA-56-7582-01 3 195938172 195938172 C T ZDHHC19 Silent p.T5T 0.13 TCGA-56-7582-01 3 196050596 196050596 G A TM4SF19 3'UTR 0.20 TCGA-56-7582-01 3 38138132 38138132 A T DLEC1 Missense_Mutation p.K748N 0.57 deleterious(0) probably_damaging(0.988) TCGA-56-7582-01 4 101331438 101331438 C T EMCN Splice_Site 0.18 TCGA-56-7582-01 4 2252831 2252831 G A MXD4 Missense_Mutation p.S151F 0.70 deleterious(0.03) possibly_damaging(0.898) TCGA-56-7582-01 4 55561732 55561732 C A KIT Missense_Mutation p.P41Q 0.58 deleterious(0) probably_damaging(0.991) TCGA-56-7582-01 4 675811 675811 G T MFSD7 Missense_Mutation p.A539E 0.82 deleterious_low_confidence(0.04) benign(0.025) TCGA-56-7582-01 5 110820058 110820058 A G CAMK4 Missense_Mutation p.E439G 0.68 deleterious_low_confidence(0.05) probably_damaging(0.995) TCGA-56-7582-01 5 122729106 122729106 T C CEP120 Missense_Mutation p.E233G 0.63 deleterious(0.01) probably_damaging(0.991) TCGA-56-7582-01 5 16670946 16670946 G C MYO10 Missense_Mutation p.Q1858E 0.15 tolerated(0.62) benign(0.038) TCGA-56-7582-01 5 36153050 36153050 G A SKP2 Silent p.P62P 0.67 TCGA-56-7582-01 5 36984951 36984953 ATA - NIPBL In_Frame_Del p.I557del 0.29 TCGA-56-7582-01 5 44811205 44811205 G A MRPS30 Silent p.Q232Q 0.12 TCGA-56-7582-01 5 53815196 53815196 C G SNX18 Missense_Mutation p.R472G 0.24 deleterious(0.03) benign(0.005) TCGA-56-7582-01 5 79817821 79817821 G A FAM151B Splice_Site p.X179_splice 0.39 TCGA-56-7582-01 5 80716320 80716320 G C SSBP2 3'UTR 0.67 TCGA-56-7582-01 6 109954451 109954451 G A AK9 Missense_Mutation p.R337C 0.27 deleterious(0) benign(0.359) TCGA-56-7582-01 6 110550107 110550107 A G CDC40 Missense_Mutation p.N497S 0.79 tolerated(0.14) benign(0.133) TCGA-56-7582-01 6 132892458 132892458 A G TAAR6 Missense_Mutation p.N333S 0.66 tolerated(0.87) benign(0.002) TCGA-56-7582-01 6 136597435 136597435 G T BCLAF1 Missense_Mutation p.Q410K 0.26 tolerated(0.06) benign(0.092) TCGA-56-7582-01 6 136599336 136599336 C A BCLAF1 Missense_Mutation p.S228I 0.09 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-56-7582-01 6 41062228 41062228 C T NFYA Missense_Mutation p.H328Y 0.51 deleterious(0.02) benign(0.099) TCGA-56-7582-01 6 43403627 43403627 C A ABCC10 Missense_Mutation p.Q583K 0.09 tolerated(0.27) benign(0.002) TCGA-56-7582-01 6 70048849 70048849 C A BAI3 Missense_Mutation p.A1077D 0.20 deleterious(0) probably_damaging(0.997) TCGA-56-7582-01 6 72947561 72947561 T C RIMS1 Silent p.L631L 0.24 TCGA-56-7582-01 6 74079507 74079507 A T OOEP Missense_Mutation p.D3E 0.54 tolerated(0.06) possibly_damaging(0.453) TCGA-56-7582-01 7 11521444 11521444 C A THSD7A Missense_Mutation p.R663L 0.63 deleterious(0) probably_damaging(1) TCGA-56-7582-01 7 11521445 11521445 G A THSD7A Nonsense_Mutation p.R663* 0.62 TCGA-56-7582-01 7 120935577 120935577 C T CPED1 Silent p.S984S 0.32 TCGA-56-7582-01 7 126173888 126173888 G T GRM8 Nonsense_Mutation p.C516* 0.18 TCGA-56-7582-01 7 126409945 126409945 C A GRM8 Missense_Mutation p.G444V 0.37 deleterious(0.02) benign(0.082) TCGA-56-7582-01 7 139268675 139268675 G A HIPK2 Silent p.D951D 0.60 TCGA-56-7582-01 7 143175746 143175746 C A TAS2R41 Missense_Mutation p.Q261K 0.81 tolerated(0.38) benign(0.034) TCGA-56-7582-01 7 150028037 150028037 G C ZBED6CL Missense_Mutation p.G182R 0.18 tolerated(0.1) benign(0.158) TCGA-56-7582-01 7 20795130 20795130 C G ABCB5 Missense_Mutation p.N1219K 0.77 deleterious(0) probably_damaging(0.993) TCGA-56-7582-01 7 3681688 3681688 C G SDK1 Missense_Mutation p.Q222E 0.42 tolerated(0.16) benign(0.065) TCGA-56-7582-01 7 51258681 51258681 A C COBL Missense_Mutation p.I184S 0.22 deleterious(0) probably_damaging(1) TCGA-56-7582-01 7 7571246 7571246 G T COL28A1 Silent p.S138S 0.37 TCGA-56-7582-01 7 76071281 76071281 G T ZP3 Missense_Mutation p.A395S 0.54 tolerated(0.11) probably_damaging(0.994) TCGA-56-7582-01 7 87080968 87080968 G T ABCB4 Missense_Mutation p.L227I 0.37 tolerated(0.57) benign(0.186) TCGA-56-7582-01 7 94540673 94540673 G C PPP1R9A Missense_Mutation p.E416D 0.09 tolerated(0.07) probably_damaging(0.99) TCGA-56-7582-01 8 106815496 106815496 C T ZFPM2 Silent p.N1062N 0.45 TCGA-56-7582-01 8 109228659 109228659 C T EIF3E Silent p.K311K 0.24 TCGA-56-7582-01 8 118175721 118175721 G T SLC30A8 Missense_Mutation p.A261S 0.47 tolerated(0.32) benign(0.297) TCGA-56-7582-01 8 144772289 144772289 C G ZNF707 Missense_Mutation p.A4G 0.42 tolerated(0.33) benign(0.011) TCGA-56-7582-01 8 144995478 144995478 C G PLEC Missense_Mutation p.E2974D 0.29 benign(0.057) TCGA-56-7582-01 8 22864422 22864422 C T RHOBTB2 Missense_Mutation p.R244C 0.20 deleterious(0) possibly_damaging(0.899) TCGA-56-7582-01 8 55370983 55370983 C T SOX17 Silent p.N95N 0.46 TCGA-56-7582-01 8 63973894 63973894 T A TTPA Missense_Mutation p.M252L 0.23 tolerated(0.93) benign(0.002) TCGA-56-7582-01 8 95508024 95508024 G C KIAA1429 Silent p.L1493L 0.26 TCGA-56-7582-01 9 138454196 138454196 G A PAEP Silent p.A51A 0.36 TCGA-56-7582-01 9 19786076 19786076 C A SLC24A2 Missense_Mutation p.W263C 0.65 deleterious(0) possibly_damaging(0.907) TCGA-56-7582-01 9 21971192 21971192 T - CDKN2A Frame_Shift_Del p.S56Afs*90 0.60 TCGA-56-7582-01 9 71627995 71627995 G T PRKACG Silent p.I338I 0.18 TCGA-56-7582-01 9 88889130 88889130 G A ISCA1 Nonsense_Mutation p.Q37* 0.46 TCGA-56-7582-01 9 96291729 96291729 C T FAM120A Missense_Mutation p.S534L 0.31 tolerated(0.05) probably_damaging(0.993) TCGA-56-7582-01 X 105153528 105153528 C A NRK Missense_Mutation p.A633E 0.76 deleterious(0) benign(0.178) TCGA-56-7582-01 X 112035065 112035065 G A AMOT Nonsense_Mutation p.Q641* 0.77 TCGA-56-7582-01 X 134948105 134948105 C A CT45A5 Missense_Mutation p.D74Y 0.31 tolerated(0.08) probably_damaging(1) TCGA-56-7582-01 X 144904352 144904352 G T SLITRK2 Nonsense_Mutation p.E137* 0.73 TCGA-56-7582-01 X 18954176 18954176 G A PHKA2 Silent p.N378N 0.47 TCGA-56-7730-01 10 118425286 118425286 T C C10orf82 Missense_Mutation p.N36S 0.27 tolerated(1) benign(0.004) TCGA-56-7730-01 10 124908032 124908032 C T HMX2 Silent p.S46S 0.72 TCGA-56-7730-01 10 134743063 134743063 G T TTC40 Intron 0.62 TCGA-56-7730-01 10 15688876 15688876 G T ITGA8 Missense_Mutation p.H392Q 0.74 deleterious(0.02) probably_damaging(0.952) TCGA-56-7730-01 10 8100408 8100408 G T GATA3 Missense_Mutation p.G128W 0.76 deleterious(0.03) probably_damaging(0.994) TCGA-56-7730-01 10 95718760 95718760 G A PIPSL RNA 0.16 TCGA-56-7730-01 10 96827408 96827408 C A CYP2C8 Missense_Mutation p.G70V 0.76 deleterious(0) probably_damaging(1) TCGA-56-7730-01 10 98192629 98192629 G T TLL2 Missense_Mutation p.T152N 0.78 deleterious(0) probably_damaging(0.985) TCGA-56-7730-01 11 114112975 114112975 G T ZBTB16 Missense_Mutation p.G514C 0.36 deleterious(0.01) probably_damaging(0.996) TCGA-56-7730-01 11 117117649 117117649 G T RNF214 Missense_Mutation p.C315F 0.27 deleterious(0.05) probably_damaging(0.977) TCGA-56-7730-01 11 117280657 117280657 G T CEP164 Nonsense_Mutation p.E1358* 0.46 TCGA-56-7730-01 11 118348795 118348795 C T KMT2A Missense_Mutation p.R1150C 0.23 probably_damaging(0.998) TCGA-56-7730-01 11 124180054 124180054 C T OR8D1 Silent p.A203A 0.51 TCGA-56-7730-01 11 126137979 126137979 T A SRPR Missense_Mutation p.E40D 0.56 deleterious(0.04) benign(0.153) TCGA-56-7730-01 11 129788493 129788493 C G PRDM10 Missense_Mutation p.D723H 0.31 tolerated(0.11) possibly_damaging(0.874) TCGA-56-7730-01 11 15199870 15199870 G C INSC Missense_Mutation p.R199S 0.44 tolerated(0.07) benign(0.008) TCGA-56-7730-01 11 20625881 20625881 A T SLC6A5 Missense_Mutation p.K197I 0.47 deleterious(0) probably_damaging(0.996) TCGA-56-7730-01 11 30032295 30032295 G T KCNA4 Missense_Mutation p.S644Y 0.31 deleterious_low_confidence(0.02) possibly_damaging(0.454) TCGA-56-7730-01 11 32657330 32657330 G C CCDC73 Nonsense_Mutation p.S366* 0.37 TCGA-56-7730-01 11 399027 399027 G T PKP3 Missense_Mutation p.K368N 0.36 deleterious(0.04) possibly_damaging(0.887) TCGA-56-7730-01 11 4674203 4674203 G T OR51E1 Silent p.V149V 0.37 TCGA-56-7730-01 11 4945255 4945255 G A OR51G1 Silent p.F105F 0.39 TCGA-56-7730-01 11 5248235 5248235 G T HBB Missense_Mutation p.P6H 0.32 tolerated(0.07) benign(0.222) TCGA-56-7730-01 11 5344629 5344629 C A OR51B2 Missense_Mutation p.G300V 0.36 tolerated(0.26) benign(0.012) TCGA-56-7730-01 11 55135768 55135768 G C OR4A15 Missense_Mutation p.G137R 0.47 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-56-7730-01 11 55595068 55595068 C G OR5L2 Missense_Mutation p.A125G 0.22 deleterious(0) probably_damaging(0.997) TCGA-56-7730-01 11 55658894 55658894 G A TRIM51 Missense_Mutation p.C382Y 0.49 deleterious(0.01) probably_damaging(1) TCGA-56-7730-01 11 55681396 55681396 G T OR5W2 Silent p.I221I 0.17 TCGA-56-7730-01 11 55927165 55927165 G T OR8K5 Missense_Mutation p.S210Y 0.23 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-56-7730-01 11 56345192 56345192 C A OR5M10 Missense_Mutation p.L2F 0.32 tolerated(0.22) benign(0.001) TCGA-56-7730-01 11 5799295 5799295 G A OR52N5 Silent p.H190H 0.90 TCGA-56-7730-01 11 57995691 57995691 G A OR10Q1 Silent p.I219I 0.58 TCGA-56-7730-01 11 5863129 5863129 C T OR52E6 5'Flank 0.47 TCGA-56-7730-01 11 60609773 60609773 C G CCDC86 Missense_Mutation p.P59R 0.64 deleterious(0) probably_damaging(0.982) TCGA-56-7730-01 11 61548514 61548514 C T MYRF Silent p.L857L 0.56 TCGA-56-7730-01 11 618736 618736 C A CDHR5 Missense_Mutation p.G608V 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-56-7730-01 11 62009816 62009816 G T SCGB1D2 Missense_Mutation p.A13S 0.38 deleterious(0.04) unknown(0) TCGA-56-7730-01 11 6412821 6412821 T C SMPD1 Missense_Mutation p.W176R 0.15 deleterious(0) probably_damaging(1) TCGA-56-7730-01 11 6458712 6458712 G A HPX Missense_Mutation p.P221S 0.42 deleterious(0) probably_damaging(0.99) TCGA-56-7730-01 11 66053231 66053231 T A YIF1A Splice_Site p.X143_splice 0.28 TCGA-56-7730-01 11 66583642 66583642 A G C11orf80 Silent p.A436A 0.43 TCGA-56-7730-01 11 67376189 67376189 G - NDUFV1 Frame_Shift_Del p.G108Afs*8 0.36 TCGA-56-7730-01 11 68190983 68190983 A C LRP5 Missense_Mutation p.Q1018H 0.21 tolerated(0.13) benign(0.004) TCGA-56-7730-01 11 7064368 7064368 G T NLRP14 Missense_Mutation p.V371L 0.44 tolerated(0.16) benign(0.037) TCGA-56-7730-01 11 71948652 71948652 T C INPPL1 Missense_Mutation p.S1122P 0.30 deleterious(0) benign(0.307) TCGA-56-7730-01 11 72469633 72469633 C T STARD10 Missense_Mutation p.R134H 0.49 deleterious(0) probably_damaging(0.955) TCGA-56-7730-01 11 74716828 74716828 C T NEU3 Missense_Mutation p.P226L 0.25 tolerated(0.43) benign(0.081) TCGA-56-7730-01 11 75439138 75439138 C G MOGAT2 Missense_Mutation p.T200R 0.26 tolerated(0.21) benign(0.038) TCGA-56-7730-01 11 76164424 76164424 T C C11orf30 Silent p.I79I 0.15 TCGA-56-7730-01 11 76833669 76833669 T C CAPN5 Missense_Mutation p.S551P 0.18 deleterious(0) probably_damaging(1) TCGA-56-7730-01 11 7818267 7818267 G C OR5P2 Missense_Mutation p.P75A 0.46 deleterious(0) probably_damaging(0.97) TCGA-56-7730-01 12 104033983 104033983 A T STAB2 Missense_Mutation p.N330I 0.28 deleterious(0) probably_damaging(0.999) TCGA-56-7730-01 12 106740161 106740161 G A TCP11L2 Silent p.Q471Q 0.52 TCGA-56-7730-01 12 112843672 112843672 G T RPL6 Missense_Mutation p.F233L 0.13 deleterious(0.02) probably_damaging(0.978) TCGA-56-7730-01 12 112843673 112843673 A T RPL6 Missense_Mutation p.F233Y 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-56-7730-01 12 119617380 119617380 C A HSPB8 Missense_Mutation p.P88H 0.26 deleterious(0.02) possibly_damaging(0.903) TCGA-56-7730-01 12 121088485 121088485 G A CABP1 Intron 0.15 TCGA-56-7730-01 12 124497426 124497426 C T ZNF664 Silent p.H245H 0.08 TCGA-56-7730-01 12 131291600 131291600 C T STX2 Missense_Mutation p.M130I 0.45 deleterious(0.01) benign(0.258) TCGA-56-7730-01 12 133353667 133353667 C A GOLGA3 Missense_Mutation p.E1244D 0.14 tolerated(0.51) benign(0.024) TCGA-56-7730-01 12 15090983 15090983 C T ERP27 Missense_Mutation p.G33D 0.45 tolerated(0.12) benign(0.031) TCGA-56-7730-01 12 18473932 18473932 C T PIK3C2G Missense_Mutation p.L392F 0.29 deleterious(0.02) benign(0.012) TCGA-56-7730-01 12 21294510 21294510 T A SLCO1B1 Translation_Start_Site p.M1? 0.42 deleterious(0) possibly_damaging(0.649) TCGA-56-7730-01 12 2602513 2602513 G T CACNA1C Missense_Mutation p.Q358H 0.40 deleterious(0) probably_damaging(0.996) TCGA-56-7730-01 12 42745747 42745747 G T PPHLN1 Missense_Mutation p.G45C 0.47 deleterious(0) probably_damaging(0.959) TCGA-56-7730-01 12 49169151 49169151 G A ADCY6 Nonsense_Mutation p.Q639* 0.50 TCGA-56-7730-01 12 4920329 4920329 G A KCNA6 Silent p.R374R 0.41 TCGA-56-7730-01 12 53552251 53552251 C A CSAD 3'UTR 0.48 TCGA-56-7730-01 12 54812937 54812937 G T ITGA5 Missense_Mutation p.R16S 0.53 deleterious_low_confidence(0.02) probably_damaging(0.953) TCGA-56-7730-01 12 57499981 57499981 G A STAT6 Nonsense_Mutation p.Q225* 0.30 TCGA-56-7730-01 12 58090095 58090095 A G OS9 Missense_Mutation p.Q173R 0.56 deleterious(0) probably_damaging(1) TCGA-56-7730-01 12 7065331 7065331 G T PTPN6 Nonsense_Mutation p.G291* 0.38 TCGA-56-7730-01 12 7354920 7354920 G C PEX5 Missense_Mutation p.Q257H 0.38 tolerated(0.18) benign(0.01) TCGA-56-7730-01 12 7476102 7476102 A T ACSM4 Missense_Mutation p.E418D 0.14 tolerated(1) benign(0.004) TCGA-56-7730-01 12 7637989 7637989 T A CD163 Missense_Mutation p.S828C 0.42 deleterious(0) possibly_damaging(0.832) TCGA-56-7730-01 12 7970587 7970587 A T SLC2A14 Nonsense_Mutation p.L395* 0.47 TCGA-56-7730-01 12 81503338 81503338 G T ACSS3 Splice_Site p.X104_splice 0.30 TCGA-56-7730-01 12 82752094 82752094 C A CCDC59 Missense_Mutation p.G21V 0.19 deleterious(0.01) possibly_damaging(0.642) TCGA-56-7730-01 12 8630035 8630035 G A CLEC6A Missense_Mutation p.C202Y 0.40 deleterious(0) probably_damaging(1) TCGA-56-7730-01 13 100518531 100518531 C T CLYBL Silent p.Y224Y 0.68 TCGA-56-7730-01 13 28877350 28877350 G T FLT1 Missense_Mutation p.P1324H 0.65 deleterious(0) probably_damaging(0.999) TCGA-56-7730-01 13 36743097 36743097 T C SOHLH2 3'UTR 0.71 TCGA-56-7730-01 13 61987567 61987567 G T PCDH20 Missense_Mutation p.A222E 0.75 deleterious(0.01) possibly_damaging(0.697) TCGA-56-7730-01 14 101335469 101335469 G T MIR493 RNA 0.56 TCGA-56-7730-01 14 103592774 103592774 G T TNFAIP2 5'UTR 0.75 TCGA-56-7730-01 14 105418158 105418158 G A AHNAK2 Silent p.D1210D 0.20 TCGA-56-7730-01 14 106667846 106667846 C G IGHV3-20 Missense_Mutation p.G29A 0.24 deleterious_low_confidence(0.01) benign(0.165) TCGA-56-7730-01 14 106733316 106733316 G T IGHV1-24 Missense_Mutation p.P60H 0.57 tolerated(0.06) benign(0.409) TCGA-56-7730-01 14 107013205 107013205 C T IGHV3-49 Silent p.L30L 0.64 TCGA-56-7730-01 14 19378534 19378534 C A OR11H12 Missense_Mutation p.A314E 0.50 tolerated(0.97) benign(0.002) TCGA-56-7730-01 14 22434059 22434059 G A TRAV12-3 Missense_Mutation p.G38R 0.27 deleterious(0.03) probably_damaging(0.957) TCGA-56-7730-01 14 29237914 29237914 C T FOXG1 Missense_Mutation p.H477Y 0.47 deleterious_low_confidence(0) benign(0.403) TCGA-56-7730-01 14 44976057 44976057 G A FSCB Missense_Mutation p.A45V 0.57 tolerated(0.12) benign(0.296) TCGA-56-7730-01 14 44976324 44976324 C A FSCB 5'UTR 0.62 TCGA-56-7730-01 14 45535914 45535914 C T FAM179B Nonsense_Mutation p.Q1512* 0.43 TCGA-56-7730-01 14 52433329 52433329 A G GNG2 Missense_Mutation p.E47G 0.50 tolerated(0.08) possibly_damaging(0.886) TCGA-56-7730-01 14 53513595 53513595 G C DDHD1 Missense_Mutation p.T865R 0.51 deleterious(0) probably_damaging(1) TCGA-56-7730-01 14 58669571 58669571 A T ACTR10 Splice_Site p.X26_splice 0.48 TCGA-56-7730-01 14 64194096 64194096 C A SGPP1 Silent p.P189P 0.24 TCGA-56-7730-01 14 73159909 73159909 C A DPF3 Missense_Mutation p.R206L 0.37 deleterious(0) possibly_damaging(0.858) TCGA-56-7730-01 14 75264956 75264956 G T YLPM1 Missense_Mutation p.G986C 0.47 benign(0.36) TCGA-56-7730-01 14 79746518 79746518 C T NRXN3 Intron 0.26 TCGA-56-7730-01 14 93404743 93404743 G C ITPK1 3'UTR 0.58 TCGA-56-7730-01 14 94953624 94953624 A G SERPINA12 3'UTR 0.13 TCGA-56-7730-01 15 24923975 24923975 G A NPAP1 Silent p.G987G 0.48 TCGA-56-7730-01 15 26806283 26806283 G T GABRB3 Missense_Mutation p.H292Q 0.50 tolerated(0.14) probably_damaging(1) TCGA-56-7730-01 15 33925287 33925287 G A RYR3 Missense_Mutation p.G1002E 0.19 probably_damaging(1) TCGA-56-7730-01 15 34078168 34078168 A T RYR3 Missense_Mutation p.M3192L 0.26 probably_damaging(0.989) TCGA-56-7730-01 15 40916549 40916549 C T CASC5 Missense_Mutation p.P1389S 0.51 tolerated(0.57) benign(0.015) TCGA-56-7730-01 15 40916865 40916865 C T CASC5 Missense_Mutation p.S1494F 0.35 deleterious(0.02) possibly_damaging(0.628) TCGA-56-7730-01 15 49325263 49325263 C A SECISBP2L Missense_Mutation p.R188M 0.26 deleterious(0) possibly_damaging(0.823) TCGA-56-7730-01 15 58902672 58902672 T C ADAM10 Missense_Mutation p.R617G 0.57 tolerated(0.39) benign(0.002) TCGA-56-7730-01 15 64792296 64792296 G T ZNF609 Missense_Mutation p.L226F 0.47 deleterious(0.02) possibly_damaging(0.898) TCGA-56-7730-01 15 64792297 64792297 G T ZNF609 Nonsense_Mutation p.G227* 0.49 TCGA-56-7730-01 15 72492008 72492008 C G PKM Missense_Mutation p.V527L 0.36 tolerated(0.18) benign(0.008) TCGA-56-7730-01 15 73564870 73564870 C T NEO1 Nonsense_Mutation p.Q978* 0.45 TCGA-56-7730-01 15 74235283 74235283 G A LOXL1 Silent p.A397A 0.07 TCGA-56-7730-01 15 75015158 75015158 T A CYP1A1 Missense_Mutation p.Q94L 0.35 deleterious(0) possibly_damaging(0.744) TCGA-56-7730-01 15 76067974 76067974 T A RP11-24M17.5 RNA 0.28 TCGA-56-7730-01 15 76225400 76225400 A G FBXO22 Missense_Mutation p.Y390C 0.32 deleterious(0) probably_damaging(0.999) TCGA-56-7730-01 15 89383363 89383363 A G ACAN Missense_Mutation p.Y192C 0.53 deleterious(0) unknown(0) TCGA-56-7730-01 15 99434579 99434579 G A IGF1R Silent p.R222R 0.18 TCGA-56-7730-01 16 1536031 1536031 G A PTX4 Missense_Mutation p.P444L 0.22 tolerated(0.1) possibly_damaging(0.901) TCGA-56-7730-01 16 1706463 1706463 C G CRAMP1L Missense_Mutation p.Q569E 0.50 deleterious_low_confidence(0) benign(0.346) TCGA-56-7730-01 16 1822351 1822351 T A MRPS34 Silent p.A176A 0.41 TCGA-56-7730-01 16 20043223 20043223 G T GPR139 Missense_Mutation p.T299K 0.54 deleterious(0.04) benign(0.247) TCGA-56-7730-01 16 20497922 20497922 G T ACSM2A Missense_Mutation p.K552N 0.30 deleterious(0) probably_damaging(0.974) TCGA-56-7730-01 16 20975855 20975855 G A DNAH3 Silent p.N3117N 0.31 TCGA-56-7730-01 16 23647447 23647447 C - PALB2 Frame_Shift_Del p.K140Nfs*37 0.17 TCGA-56-7730-01 16 24372823 24372823 C T CACNG3 Missense_Mutation p.A196V 0.47 deleterious(0) probably_damaging(0.956) TCGA-56-7730-01 16 28919935 28919935 C A RABEP2 Missense_Mutation p.V414L 0.29 tolerated(0.26) benign(0.06) TCGA-56-7730-01 16 28989300 28989300 C G SPNS1 Missense_Mutation p.L127V 0.58 deleterious(0.04) benign(0.088) TCGA-56-7730-01 16 3304275 3304275 C A MEFV Nonsense_Mutation p.E265* 0.25 TCGA-56-7730-01 16 4493146 4493146 G C DNAJA3 Silent p.V304V 0.47 TCGA-56-7730-01 16 48303980 48303980 A C LONP2 Missense_Mutation p.M346L 0.51 tolerated(1) benign(0.004) TCGA-56-7730-01 16 55530925 55530925 T C MMP2 Silent p.I520I 0.28 TCGA-56-7730-01 16 57951374 57951374 A G CNGB1 Missense_Mutation p.M655T 0.25 deleterious(0.01) benign(0.013) TCGA-56-7730-01 16 67289747 67289747 C T SLC9A5 Silent p.V275V 0.33 TCGA-56-7730-01 16 67397546 67397546 C G LRRC36 Missense_Mutation p.L211V 0.44 deleterious_low_confidence(0.05) benign(0.019) TCGA-56-7730-01 16 69147431 69147431 G T HAS3 Missense_Mutation p.G242W 0.44 deleterious(0) probably_damaging(1) TCGA-56-7730-01 16 77918618 77918618 G A VAT1L Silent p.R332R 0.47 TCGA-56-7730-01 16 85712201 85712201 G A GINS2 Missense_Mutation p.A126V 0.07 deleterious(0) probably_damaging(0.982) TCGA-56-7730-01 17 10438615 10438615 G T MYH2 Missense_Mutation p.P681H 0.23 deleterious(0) possibly_damaging(0.573) TCGA-56-7730-01 17 12661609 12661609 G T MYOCD Intron 0.24 TCGA-56-7730-01 17 20799069 20799069 G T CCDC144NL Silent p.R89R 0.37 TCGA-56-7730-01 17 27028146 27028146 A G SUPT6H Missense_Mutation p.K1665R 0.40 tolerated(0.51) benign(0.034) TCGA-56-7730-01 17 27437016 27437016 C A MYO18A Missense_Mutation p.R1064L 0.50 tolerated(0.35) benign(0.079) TCGA-56-7730-01 17 31091967 31091967 T C MYO1D Missense_Mutation p.T322A 0.33 tolerated(1) benign(0.016) TCGA-56-7730-01 17 31092090 31092090 T C MYO1D Missense_Mutation p.K281E 0.38 tolerated(1) benign(0.01) TCGA-56-7730-01 17 33768667 33768667 T C SLFN13 Missense_Mutation p.M613V 0.11 deleterious(0.04) benign(0.009) TCGA-56-7730-01 17 34074119 34074119 C A GAS2L2 Missense_Mutation p.R334M 0.36 deleterious(0.01) probably_damaging(0.943) TCGA-56-7730-01 17 35446009 35446009 C A ACACA Missense_Mutation p.A2298S 0.12 tolerated(0.32) benign(0.153) TCGA-56-7730-01 17 36521282 36521282 C G SOCS7 Silent p.P350P 0.50 TCGA-56-7730-01 17 36521293 36521293 G A SOCS7 Splice_Site p.X354_splice 0.31 TCGA-56-7730-01 17 3664450 3664450 G T ITGAE Missense_Mutation p.A152E 0.57 tolerated(0.38) benign(0.004) TCGA-56-7730-01 17 37899241 37899241 C A GRB7 Missense_Mutation p.Q156K 0.36 tolerated(0.16) benign(0.117) TCGA-56-7730-01 17 40266956 40266956 C T KAT2A Missense_Mutation p.R658H 0.13 deleterious(0.01) benign(0.331) TCGA-56-7730-01 17 48755478 48755478 C T ABCC3 Silent p.F1201F 0.10 TCGA-56-7730-01 17 5462328 5462328 G T NLRP1 Missense_Mutation p.P563Q 0.13 tolerated(0.11) possibly_damaging(0.753) TCGA-56-7730-01 17 66924153 66924153 C T ABCA8 Missense_Mutation p.D393N 0.51 tolerated(0.38) benign(0.013) TCGA-56-7730-01 17 72287252 72287252 G T DNAI2 Missense_Mutation p.G235V 0.36 deleterious(0) probably_damaging(0.999) TCGA-56-7730-01 17 72947710 72947710 G T HID1 Silent p.V774V 0.18 TCGA-56-7730-01 17 73732390 73732390 C A ITGB4 Missense_Mutation p.H595N 0.14 tolerated(0.3) benign(0.001) TCGA-56-7730-01 17 75208241 75208241 G T SEC14L1 Missense_Mutation p.M607I 0.47 tolerated(0.44) possibly_damaging(0.487) TCGA-56-7730-01 17 75208242 75208242 G T SEC14L1 Missense_Mutation p.V608L 0.46 deleterious(0.03) probably_damaging(0.997) TCGA-56-7730-01 17 7578449 7578449 C T TP53 Missense_Mutation p.A161T 0.63 deleterious(0) probably_damaging(1) TCGA-56-7730-01 17 7579374 7579374 C T TP53 Missense_Mutation p.G105S 0.31 tolerated(0.07) probably_damaging(1) TCGA-56-7730-01 17 78058646 78058646 G C CCDC40 Silent p.L698L 0.57 TCGA-56-7730-01 17 8416959 8416959 T A MYH10 Missense_Mutation p.Q881L 0.19 possibly_damaging(0.813) TCGA-56-7730-01 18 14784532 14784532 C G ANKRD30B Missense_Mutation p.A557G 0.33 deleterious(0.03) possibly_damaging(0.448) TCGA-56-7730-01 18 19263512 19263512 G T ABHD3 Intron 0.28 TCGA-56-7730-01 18 2945689 2945689 C A LPIN2 Intron 0.36 TCGA-56-7730-01 18 39542476 39542476 C T PIK3C3 Missense_Mutation p.P94S 0.70 deleterious(0) probably_damaging(0.999) TCGA-56-7730-01 18 55027368 55027368 C G ST8SIA3 Missense_Mutation p.P335A 0.78 possibly_damaging(0.883) TCGA-56-7730-01 18 55027369 55027369 C A ST8SIA3 Missense_Mutation p.P335Q 0.78 probably_damaging(0.986) TCGA-56-7730-01 18 9888033 9888033 C G TXNDC2 Missense_Mutation p.I519M 0.54 deleterious(0) probably_damaging(0.988) TCGA-56-7730-01 19 1005248 1005248 C A GRIN3B Missense_Mutation p.A583E 0.28 deleterious(0) possibly_damaging(0.644) TCGA-56-7730-01 19 10597434 10597439 GTGTCT - KEAP1 In_Frame_Del p.D589_T590del 0.21 TCGA-56-7730-01 19 10610198 10610198 C A KEAP1 Missense_Mutation p.C171F 0.37 deleterious(0) probably_damaging(1) TCGA-56-7730-01 19 11598238 11598238 C G ZNF653 Missense_Mutation p.G347A 0.39 tolerated(0.14) benign(0.001) TCGA-56-7730-01 19 11917578 11917578 T A ZNF491 Silent p.P270P 0.53 TCGA-56-7730-01 19 12058112 12058112 G A ZNF700 Silent p.L60L 0.22 TCGA-56-7730-01 19 13004458 13004458 C - GCDH Frame_Shift_Del p.Q167Sfs*57 0.30 TCGA-56-7730-01 19 13248129 13248129 G A NACC1 Missense_Mutation p.V389I 0.17 tolerated(0.09) benign(0.012) TCGA-56-7730-01 19 1391021 1391021 C T NDUFS7 Missense_Mutation p.T127I 0.42 deleterious_low_confidence(0) possibly_damaging(0.6) TCGA-56-7730-01 19 14031643 14031643 G A CC2D1A Missense_Mutation p.V517M 0.17 tolerated(0.33) benign(0.027) TCGA-56-7730-01 19 15079252 15079252 C T SLC1A6 Silent p.V137V 0.36 TCGA-56-7730-01 19 16178529 16178530 - T TPM4 Frame_Shift_Ins p.E33* 0.39 TCGA-56-7730-01 19 18368727 18368727 C T KIAA1683 Missense_Mutation p.G1123S 0.48 tolerated(0.28) benign(0.115) TCGA-56-7730-01 19 21934418 21934418 C G ZNF100 Intron 0.47 TCGA-56-7730-01 19 22939561 22939561 G T ZNF99 3'Flank 0.12 TCGA-56-7730-01 19 2878183 2878183 G T ZNF556 Silent p.G409G 0.28 TCGA-56-7730-01 19 35791224 35791224 C T MAG Missense_Mutation p.T296I 0.13 deleterious(0.03) benign(0.355) TCGA-56-7730-01 19 36109528 36109528 C T HAUS5 Missense_Mutation p.R315W 0.10 tolerated(0.1) possibly_damaging(0.493) TCGA-56-7730-01 19 36220876 36220876 G T KMT2B Missense_Mutation p.E1642D 0.61 probably_damaging(0.973) TCGA-56-7730-01 19 36340488 36340488 C T NPHS1 Missense_Mutation p.A226T 0.45 tolerated(1) benign(0.001) TCGA-56-7730-01 19 39051989 39051989 C A RYR1 Missense_Mutation p.F4173L 0.57 benign(0) TCGA-56-7730-01 19 39051990 39051990 C T RYR1 Missense_Mutation p.R4174C 0.56 benign(0.428) TCGA-56-7730-01 19 39397917 39397917 C A NFKBIB Missense_Mutation p.L226I 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-56-7730-01 19 39957362 39957362 G A SUPT5H Silent p.R338R 0.56 TCGA-56-7730-01 19 39960835 39960835 G A SUPT5H Missense_Mutation p.R484Q 0.29 deleterious(0) probably_damaging(0.991) TCGA-56-7730-01 19 41003463 41003463 C T SPTBN4 Missense_Mutation p.R246C 0.20 deleterious(0) benign(0.195) TCGA-56-7730-01 19 41038593 41038593 A G SPTBN4 Missense_Mutation p.H1337R 0.25 tolerated(1) possibly_damaging(0.764) TCGA-56-7730-01 19 4157010 4157010 G T CREB3L3 Missense_Mutation p.D59Y 0.50 deleterious(0) probably_damaging(0.985) TCGA-56-7730-01 19 48244397 48244397 C A EHD2 Missense_Mutation p.T447N 0.19 tolerated(0.59) benign(0.035) TCGA-56-7730-01 19 48542528 48542528 G T CABP5 Silent p.P95P 0.58 TCGA-56-7730-01 19 49552025 49552025 T A CGB8 5'UTR 0.18 TCGA-56-7730-01 19 49842651 49842651 T C CD37 Missense_Mutation p.L250P 0.10 deleterious(0) probably_damaging(0.998) TCGA-56-7730-01 19 50340131 50340131 G A MED25 Missense_Mutation p.R725Q 0.61 deleterious_low_confidence(0) benign(0.026) TCGA-56-7730-01 19 50784922 50784922 G T MYH14 Silent p.R1454R 0.47 TCGA-56-7730-01 19 53472780 53472780 T C ZNF702P RNA 0.23 TCGA-56-7730-01 19 54313706 54313706 C G NLRP12 Missense_Mutation p.V403L 0.18 deleterious(0.01) possibly_damaging(0.553) TCGA-56-7730-01 19 54314512 54314512 C T NLRP12 Missense_Mutation p.R134H 0.46 deleterious(0) probably_damaging(0.999) TCGA-56-7730-01 19 55450793 55450793 G C NLRP7 Missense_Mutation p.S465C 0.25 tolerated(0.08) benign(0.289) TCGA-56-7730-01 19 56465879 56465879 G T NLRP8 Missense_Mutation p.R152L 0.49 deleterious(0.02) benign(0.011) TCGA-56-7730-01 19 58213779 58213779 A T ZNF154 Missense_Mutation p.W180R 0.24 tolerated(0.75) benign(0.072) TCGA-56-7730-01 19 58982783 58982783 C T ZNF324 Silent p.S308S 0.13 TCGA-56-7730-01 19 9325120 9325120 A T OR7D4 Missense_Mutation p.Y132N 0.22 deleterious(0) probably_damaging(0.999) TCGA-56-7730-01 1 109734396 109734396 A G KIAA1324 Missense_Mutation p.K532E 0.75 deleterious(0.03) benign(0.205) TCGA-56-7730-01 1 112308440 112308440 C G DDX20 Missense_Mutation p.A465G 0.67 tolerated(0.2) benign(0.093) TCGA-56-7730-01 1 142713882 142713884 CTA AT RP11-417J8.6 RNA 0.16 TCGA-56-7730-01 1 149898622 149898622 C A SF3B4 Missense_Mutation p.D118Y 0.34 deleterious(0.01) probably_damaging(0.96) TCGA-56-7730-01 1 152538291 152538291 C A LCE3E 3'UTR 0.40 TCGA-56-7730-01 1 152733497 152733497 C A KPRP Missense_Mutation p.P478Q 0.41 deleterious(0) probably_damaging(0.972) TCGA-56-7730-01 1 152749059 152749059 G T LCE1F Missense_Mutation p.G71V 0.44 deleterious_low_confidence(0) unknown(0) TCGA-56-7730-01 1 152759906 152759906 G T LCE1E Missense_Mutation p.C44F 0.39 deleterious_low_confidence(0) unknown(0) TCGA-56-7730-01 1 153043231 153043231 G A SPRR2B Missense_Mutation p.P29S 0.38 deleterious_low_confidence(0) unknown(0) TCGA-56-7730-01 1 155319346 155319346 G A ASH1L Missense_Mutation p.P2470S 0.43 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-56-7730-01 1 155823321 155823321 G C GON4L Missense_Mutation p.T84S 0.39 tolerated_low_confidence(0.07) possibly_damaging(0.486) TCGA-56-7730-01 1 155904165 155904165 G A KIAA0907 5'UTR 0.40 TCGA-56-7730-01 1 157504337 157504337 T A FCRL5 Intron 0.41 TCGA-56-7730-01 1 158325941 158325941 T G CD1E Intron 0.47 TCGA-56-7730-01 1 160054066 160054066 C A KCNJ9 Silent p.I82I 0.35 TCGA-56-7730-01 1 160456948 160456948 T G SLAMF6 Silent p.T299T 0.38 TCGA-56-7730-01 1 161969984 161969984 C A OLFML2B Missense_Mutation p.A290S 0.24 tolerated(0.12) benign(0.065) TCGA-56-7730-01 1 16353221 16353221 G T CLCNKA Silent p.V202V 0.68 TCGA-56-7730-01 1 167852854 167852854 G A ADCY10 Nonsense_Mutation p.Q281* 0.42 TCGA-56-7730-01 1 169484846 169484846 A T F5 Missense_Mutation p.W2122R 0.38 deleterious(0) probably_damaging(1) TCGA-56-7730-01 1 172635091 172635091 G A FASLG Missense_Mutation p.V261I 0.16 tolerated(0.07) possibly_damaging(0.665) TCGA-56-7730-01 1 175348694 175348694 G T TNR Missense_Mutation p.L653M 0.27 deleterious(0.04) probably_damaging(0.957) TCGA-56-7730-01 1 175348864 175348864 G A TNR Missense_Mutation p.A596V 0.19 tolerated(0.07) probably_damaging(1) TCGA-56-7730-01 1 183212402 183212402 G A LAMC2 Missense_Mutation p.R1150H 0.10 tolerated(0.05) benign(0.004) TCGA-56-7730-01 1 207653342 207653342 A T CR2 Silent p.I1044I 0.27 TCGA-56-7730-01 1 214531271 214531277 GAGTCTG - PTPN14 Frame_Shift_Del p.R1185Ffs*60 0.16 TCGA-56-7730-01 1 215987093 215987093 C T USH2A Missense_Mutation p.A3242T 0.41 benign(0.001) TCGA-56-7730-01 1 216011363 216011363 G T USH2A Missense_Mutation p.P3114Q 0.43 benign(0.342) TCGA-56-7730-01 1 229631639 229631639 C T NUP133 Nonsense_Mutation p.W325* 0.13 TCGA-56-7730-01 1 235938271 235938271 G A LYST Missense_Mutation p.S1859F 0.24 deleterious(0.02) possibly_damaging(0.456) TCGA-56-7730-01 1 237730007 237730007 C T RYR2 Missense_Mutation p.R1119C 0.24 probably_damaging(0.999) TCGA-56-7730-01 1 241262011 241262011 G T RGS7 Missense_Mutation p.R44S 0.27 deleterious(0) probably_damaging(0.986) TCGA-56-7730-01 1 247051510 247051510 T A AHCTF1 Missense_Mutation p.D774V 0.24 deleterious(0) possibly_damaging(0.642) TCGA-56-7730-01 1 247587300 247587300 G A NLRP3 Silent p.Q185Q 0.42 TCGA-56-7730-01 1 247695249 247695249 C A OR2C3 Missense_Mutation p.A189S 0.55 tolerated(0.29) benign(0.048) TCGA-56-7730-01 1 247920820 247920820 T C OR1C1 Missense_Mutation p.M297V 0.27 deleterious(0.03) benign(0.003) TCGA-56-7730-01 1 248569731 248569731 G T OR2T1 Missense_Mutation p.G146W 0.32 deleterious(0) probably_damaging(0.994) TCGA-56-7730-01 1 28598911 28598911 C A SESN2 Silent p.R157R 0.23 TCGA-56-7730-01 1 28786774 28786774 G A PHACTR4 Missense_Mutation p.R91K 0.77 tolerated(0.22) possibly_damaging(0.81) TCGA-56-7730-01 1 36564312 36564312 T A COL8A2 Nonsense_Mutation p.K324* 0.71 TCGA-56-7730-01 1 36762331 36762332 - A THRAP3 Frame_Shift_Ins p.T757Nfs*6 0.27 TCGA-56-7730-01 1 38184013 38184013 C T EPHA10 3'UTR 0.35 TCGA-56-7730-01 1 55472923 55472923 C T BSND Missense_Mutation p.R176C 0.74 tolerated(0.06) benign(0.001) TCGA-56-7730-01 1 75037448 75037448 C A C1orf173 Missense_Mutation p.G1316W 0.75 deleterious(0) probably_damaging(0.972) TCGA-56-7730-01 1 879553 879553 G - SAMD11 3'UTR 0.51 TCGA-56-7730-01 1 89427078 89427078 T C CCBL2 Missense_Mutation p.N218D 0.18 deleterious(0) probably_damaging(1) TCGA-56-7730-01 20 10620415 10620415 C T JAG1 Missense_Mutation p.G1130R 0.62 tolerated(0.52) benign(0.296) TCGA-56-7730-01 20 1538304 1538304 G T RP4-576H24.4 Intron 0.20 TCGA-56-7730-01 20 17608274 17608274 C G RRBP1 Missense_Mutation p.E502Q 0.11 tolerated(0.25) possibly_damaging(0.607) TCGA-56-7730-01 20 21329020 21329020 A T XRN2 Silent p.A605A 0.21 TCGA-56-7730-01 20 31671678 31671678 G A BPIFB4 Silent p.T225T 0.18 TCGA-56-7730-01 20 35060704 35060704 G C DLGAP4 Missense_Mutation p.R195P 0.35 deleterious(0.02) probably_damaging(0.981) TCGA-56-7730-01 20 47364405 47364405 G C PREX1 Missense_Mutation p.R78G 0.38 deleterious(0) probably_damaging(1) TCGA-56-7730-01 20 47602097 47602097 G C ARFGEF2 Missense_Mutation p.K741N 0.28 deleterious(0) probably_damaging(1) TCGA-56-7730-01 20 57766761 57766761 G T ZNF831 Missense_Mutation p.R229S 0.20 tolerated(0.8) benign(0.004) TCGA-56-7730-01 20 57766762 57766762 G T ZNF831 Missense_Mutation p.G230C 0.20 deleterious(0.01) probably_damaging(0.921) TCGA-56-7730-01 21 10951419 10951419 C T TPTE Missense_Mutation p.G98E 0.18 deleterious(0) possibly_damaging(0.788) TCGA-56-7730-01 21 22841001 22841001 C A NCAM2 Missense_Mutation p.S598Y 0.72 deleterious(0) probably_damaging(0.971) TCGA-56-7730-01 21 31914174 31914174 A T KRTAP19-6 5'UTR 0.82 TCGA-56-7730-01 21 43702404 43702404 G T ABCG1 Silent p.A203A 0.65 TCGA-56-7730-01 22 29490261 29490261 A G KREMEN1 Missense_Mutation p.N38S 0.40 deleterious(0.01) possibly_damaging(0.711) TCGA-56-7730-01 22 29835133 29835133 C A RFPL1 Missense_Mutation p.P118Q 0.46 deleterious(0.03) probably_damaging(0.986) TCGA-56-7730-01 22 30762065 30762065 G T CCDC157 Missense_Mutation p.V26L 0.51 tolerated(0.1) probably_damaging(0.989) TCGA-56-7730-01 22 31487380 31487380 G T SMTN Missense_Mutation p.M457I 0.24 deleterious(0) probably_damaging(0.989) TCGA-56-7730-01 22 35478538 35478538 G A ISX Missense_Mutation p.R86H 0.36 deleterious(0) probably_damaging(1) TCGA-56-7730-01 22 39123346 39123346 G T GTPBP1 Missense_Mutation p.Q510H 0.35 deleterious(0) probably_damaging(0.992) TCGA-56-7730-01 22 39772127 39772127 G A SYNGR1 Silent p.K136K 0.04 TCGA-56-7730-01 22 41513550 41513550 G T EP300 Missense_Mutation p.G152C 0.45 unknown(0) TCGA-56-7730-01 22 42973027 42973027 C A SERHL2 3'Flank 0.14 TCGA-56-7730-01 2 101644559 101644559 T C TBC1D8 Missense_Mutation p.H786R 0.26 deleterious(0.01) probably_damaging(0.987) TCGA-56-7730-01 2 106729115 106729115 C T UXS1 Missense_Mutation p.G289E 0.14 deleterious(0) possibly_damaging(0.743) TCGA-56-7730-01 2 130913674 130913674 C A SMPD4 Missense_Mutation p.W447L 0.19 deleterious(0.04) possibly_damaging(0.803) TCGA-56-7730-01 2 139429114 139429114 A T NXPH2 Missense_Mutation p.L58Q 0.56 deleterious(0.01) probably_damaging(0.999) TCGA-56-7730-01 2 15496445 15496445 G - NBAS Frame_Shift_Del p.Q1305Rfs*3 0.11 TCGA-56-7730-01 2 158115921 158115921 C T GALNT5 Missense_Mutation p.R443C 0.21 deleterious(0) possibly_damaging(0.776) TCGA-56-7730-01 2 163213332 163213332 G C GCA Missense_Mutation p.W124S 0.21 deleterious(0) probably_damaging(1) TCGA-56-7730-01 2 163213333 163213333 G T GCA Missense_Mutation p.W124C 0.24 deleterious(0) probably_damaging(1) TCGA-56-7730-01 2 167289234 167289234 C T SCN7A Missense_Mutation p.S729N 0.44 tolerated(0.22) benign(0.002) TCGA-56-7730-01 2 168104232 168104232 C A XIRP2 Silent p.V2110V 0.22 TCGA-56-7730-01 2 173457663 173457663 G C PDK1 Missense_Mutation p.A353P 0.64 deleterious(0) possibly_damaging(0.834) TCGA-56-7730-01 2 179481703 179481703 A G TTN Silent p.G15971G 0.41 TCGA-56-7730-01 2 179582811 179582811 G T TTN Missense_Mutation p.P8308T 0.55 TCGA-56-7730-01 2 187692700 187692700 A G ZSWIM2 3'UTR 0.62 TCGA-56-7730-01 2 189850468 189850468 C T COL3A1 Silent p.P137P 0.43 TCGA-56-7730-01 2 198650808 198650808 G T BOLL 5'UTR 0.53 TCGA-56-7730-01 2 208841694 208841694 C T PLEKHM3 Silent p.V409V 0.62 TCGA-56-7730-01 2 220505671 220505671 G T SLC4A3 Missense_Mutation p.R1230M 0.19 tolerated(0.11) possibly_damaging(0.845) TCGA-56-7730-01 2 228884851 228884851 G C SPHKAP Nonsense_Mutation p.S240* 0.22 TCGA-56-7730-01 2 234775209 234775209 C T MSL3P1 RNA 0.29 TCGA-56-7730-01 2 240982088 240982088 C T PRR21 Silent p.T104T 0.44 TCGA-56-7730-01 2 242756110 242756110 G C NEU4 Missense_Mutation p.G88R 0.47 tolerated(0.48) benign(0.032) TCGA-56-7730-01 2 33745737 33745737 C T RASGRP3 Silent p.I118I 0.16 TCGA-56-7730-01 2 33824342 33824342 C A FAM98A 5'UTR 0.25 TCGA-56-7730-01 2 47222329 47222329 C T TTC7A Silent p.S352S 0.10 TCGA-56-7730-01 2 49216171 49216171 T A FSHR Missense_Mutation p.I157F 0.39 deleterious(0.01) benign(0.052) TCGA-56-7730-01 2 54001553 54001553 C A CHAC2 Missense_Mutation p.A149E 0.45 deleterious(0) possibly_damaging(0.619) TCGA-56-7730-01 2 7164522 7164522 G C RNF144A Missense_Mutation p.D178H 0.42 deleterious(0.05) possibly_damaging(0.776) TCGA-56-7730-01 2 80529326 80529326 G T LRRTM1 3'UTR 0.44 TCGA-56-7730-01 2 89513022 89513022 C A IGKV1-27 Silent p.G79G 0.32 TCGA-56-7730-01 2 95601068 95601068 G T AC097374.2 RNA 0.20 TCGA-56-7730-01 3 100042461 100042461 T C TBC1D23 Silent p.T683T 0.17 TCGA-56-7730-01 3 100042462 100042462 A T TBC1D23 Nonsense_Mutation p.K684* 0.21 TCGA-56-7730-01 3 100148647 100148647 G T LNP1 Missense_Mutation p.W25L 0.28 tolerated(0.57) probably_damaging(0.999) TCGA-56-7730-01 3 10123051 10123051 G T FANCD2 Missense_Mutation p.G1043C 0.70 deleterious(0) probably_damaging(0.997) TCGA-56-7730-01 3 101484057 101484057 G A CEP97 Missense_Mutation p.E754K 0.36 tolerated(0.13) benign(0.014) TCGA-56-7730-01 3 102153940 102153940 C A ZPLD1 5'UTR 0.26 TCGA-56-7730-01 3 109023420 109023420 G T DPPA2 Silent p.T252T 0.32 TCGA-56-7730-01 3 109027103 109027103 C A DPPA2 Missense_Mutation p.R145L 0.31 tolerated(0.23) benign(0.202) TCGA-56-7730-01 3 111312998 111312998 T A ZBED2 Missense_Mutation p.K17N 0.34 deleterious_low_confidence(0) possibly_damaging(0.888) TCGA-56-7730-01 3 121037340 121037340 A G STXBP5L Missense_Mutation p.D734G 0.23 deleterious(0.01) possibly_damaging(0.574) TCGA-56-7730-01 3 126723530 126723530 G T PLXNA1 Missense_Mutation p.C532F 0.56 deleterious(0) possibly_damaging(0.861) TCGA-56-7730-01 3 128849402 128849402 C A ISY1 Silent p.S269S 0.24 TCGA-56-7730-01 3 130282464 130282464 T A COL6A6 Missense_Mutation p.V206E 0.29 deleterious(0.01) benign(0.101) TCGA-56-7730-01 3 138739137 138739137 C A PRR23B Nonsense_Mutation p.E123* 0.26 TCGA-56-7730-01 3 1427463 1427463 G T CNTN6 Missense_Mutation p.V896F 0.29 deleterious(0) benign(0.388) TCGA-56-7730-01 3 151130993 151130993 T C MED12L Silent p.S2034S 0.24 TCGA-56-7730-01 3 160219908 160219908 T A KPNA4 Missense_Mutation p.E517V 0.23 tolerated(0.18) benign(0.302) TCGA-56-7730-01 3 160219909 160219909 C G KPNA4 Missense_Mutation p.E517Q 0.23 tolerated(0.51) benign(0.183) TCGA-56-7730-01 3 170884897 170884897 C A TNIK Missense_Mutation p.K312N 0.14 deleterious(0.01) unknown(0) TCGA-56-7730-01 3 172241245 172241245 T C TNFSF10 5'UTR 0.07 TCGA-56-7730-01 3 179689454 179689454 C - PEX5L Splice_Site p.X8_splice 0.33 TCGA-56-7730-01 3 186507735 186507735 C G RFC4 3'UTR 0.24 TCGA-56-7730-01 3 193048946 193048946 A G ATP13A5 Missense_Mutation p.M476T 0.36 deleterious(0) benign(0.334) TCGA-56-7730-01 3 38047684 38047684 C A VILL Missense_Mutation p.H716N 0.26 deleterious(0.01) benign(0.001) TCGA-56-7730-01 3 38674748 38674748 T C SCN5A Silent p.T17T 0.74 TCGA-56-7730-01 3 43647211 43647211 T A ANO10 Missense_Mutation p.D45V 0.79 deleterious(0.05) benign(0.267) TCGA-56-7730-01 3 48461091 48461091 G T PLXNB1 Silent p.L868L 0.24 TCGA-56-7730-01 3 49149170 49149170 T C USP19 Missense_Mutation p.T992A 0.64 tolerated(0.65) benign(0.002) TCGA-56-7730-01 3 49785476 49785476 C T IP6K1 5'UTR 0.11 TCGA-56-7730-01 3 49933259 49933259 C A MST1R Missense_Mutation p.D951Y 0.74 deleterious(0.02) benign(0.212) TCGA-56-7730-01 3 58134031 58134031 A G FLNB Missense_Mutation p.K1974E 0.73 tolerated(0.4) benign(0.097) TCGA-56-7730-01 3 62204610 62204610 G T PTPRG Missense_Mutation p.L747F 0.74 deleterious(0) possibly_damaging(0.642) TCGA-56-7730-01 3 74334456 74334456 G A CNTN3 Missense_Mutation p.P902S 0.25 deleterious(0) possibly_damaging(0.659) TCGA-56-7730-01 3 97806319 97806319 C A OR5AC2 Silent p.T101T 0.27 TCGA-56-7730-01 4 102839309 102839309 G C BANK1 Missense_Mutation p.G390A 0.62 deleterious(0) probably_damaging(0.999) TCGA-56-7730-01 4 11401516 11401516 C A HS3ST1 Missense_Mutation p.Q38H 0.29 tolerated(0.18) benign(0.235) TCGA-56-7730-01 4 114257199 114257199 C T ANK2 Missense_Mutation p.R1193C 0.24 probably_damaging(1) TCGA-56-7730-01 4 114290734 114290734 A T ANK2 Missense_Mutation p.S3795C 0.80 benign(0.012) TCGA-56-7730-01 4 155490382 155490382 G T FGB Missense_Mutation p.R294M 0.67 deleterious(0) probably_damaging(0.996) TCGA-56-7730-01 4 156135773 156135773 T C NPY2R Missense_Mutation p.Y228H 0.72 deleterious(0) probably_damaging(0.997) TCGA-56-7730-01 4 175160144 175160144 C A FBXO8 Splice_Site p.X258_splice 0.84 TCGA-56-7730-01 4 22389637 22389637 C A GPR125 Missense_Mutation p.R1219S 0.76 tolerated(0.58) benign(0.055) TCGA-56-7730-01 4 23831088 23831088 T C PPARGC1A Missense_Mutation p.K184E 0.77 deleterious(0.02) probably_damaging(0.997) TCGA-56-7730-01 4 56277958 56277958 G A TMEM165 Missense_Mutation p.V129M 0.10 deleterious(0) probably_damaging(0.999) TCGA-56-7730-01 4 56890692 56890692 C T CEP135 Nonsense_Mutation p.R1116* 0.75 TCGA-56-7730-01 4 73013533 73013533 G T NPFFR2 3'UTR 0.59 TCGA-56-7730-01 4 8582860 8582860 G T GPR78 Missense_Mutation p.G51C 0.60 tolerated(1) benign(0.131) TCGA-56-7730-01 4 94343979 94343979 G C GRID2 Missense_Mutation p.G469R 0.60 deleterious(0) probably_damaging(1) TCGA-56-7730-01 5 102423748 102423748 C A GIN1 Nonsense_Mutation p.E475* 0.74 TCGA-56-7730-01 5 112889017 112889017 A G YTHDC2 Missense_Mutation p.M610V 0.72 tolerated(0.1) benign(0.028) TCGA-56-7730-01 5 135188509 135188509 C T SLC25A48 Silent p.D140D 0.70 TCGA-56-7730-01 5 13824427 13824427 C A DNAH5 Missense_Mutation p.G2154C 0.38 probably_damaging(0.991) TCGA-56-7730-01 5 140476914 140476914 T C PCDHB2 3'UTR 0.56 TCGA-56-7730-01 5 140563830 140563830 C A PCDHB16 Missense_Mutation p.Q566K 0.62 deleterious_low_confidence(0) benign(0.146) TCGA-56-7730-01 5 140573821 140573821 C A PCDHB10 Missense_Mutation p.Q566K 0.27 deleterious_low_confidence(0) possibly_damaging(0.645) TCGA-56-7730-01 5 19571727 19571727 A T CDH18 Missense_Mutation p.V405D 0.53 deleterious(0) probably_damaging(0.999) TCGA-56-7730-01 5 35763752 35763752 A C SPEF2 Missense_Mutation p.E1250A 0.23 deleterious(0) probably_damaging(0.992) TCGA-56-7730-01 5 41203321 41203321 G C C6 Silent p.R4R 0.31 TCGA-56-7730-01 5 45261963 45261963 G T HCN1 3'UTR 0.36 TCGA-56-7730-01 5 45262627 45262627 G T HCN1 Missense_Mutation p.P690Q 0.50 tolerated_low_confidence(0.73) benign(0.001) TCGA-56-7730-01 5 45462028 45462028 A G HCN1 Missense_Mutation p.W311R 0.61 deleterious(0) probably_damaging(0.998) TCGA-56-7730-01 5 45645702 45645702 C G HCN1 Missense_Mutation p.W145S 0.14 deleterious(0) benign(0.113) TCGA-56-7730-01 5 50091208 50091208 T C PARP8 Missense_Mutation p.I462T 0.22 deleterious_low_confidence(0.02) benign(0.003) TCGA-56-7730-01 5 68470110 68470110 G T CCNB1 Silent p.L193L 0.73 TCGA-56-7730-01 5 73931463 73931463 A T ENC1 Missense_Mutation p.V283E 0.78 deleterious(0) possibly_damaging(0.766) TCGA-56-7730-01 5 79026173 79026173 G C CMYA5 Missense_Mutation p.E529Q 0.78 possibly_damaging(0.727) TCGA-56-7730-01 6 101094545 101094545 C A ASCC3 Missense_Mutation p.R1193S 0.52 deleterious(0) probably_damaging(0.998) TCGA-56-7730-01 6 109773553 109773553 T C MICAL1 Missense_Mutation p.N243S 0.35 deleterious(0) probably_damaging(0.999) TCGA-56-7730-01 6 117589551 117589551 C T VGLL2 Silent p.S96S 0.77 TCGA-56-7730-01 6 13230389 13230389 T C PHACTR1 Missense_Mutation p.L452P 0.21 deleterious(0.04) probably_damaging(0.955) TCGA-56-7730-01 6 143081352 143081352 C A HIVEP2 Nonsense_Mutation p.E2025* 0.76 TCGA-56-7730-01 6 170657237 170657237 A T FAM120B Splice_Site p.X673_splice 0.86 TCGA-56-7730-01 6 26056437 26056437 C T HIST1H1C Missense_Mutation p.E74K 0.40 tolerated(0.17) possibly_damaging(0.475) TCGA-56-7730-01 6 35208973 35208973 T C SCUBE3 Silent p.T375T 0.37 TCGA-56-7730-01 6 38791425 38791425 A T DNAH8 Nonsense_Mutation p.K1053* 0.31 TCGA-56-7730-01 6 38793978 38793978 G T DNAH8 Missense_Mutation p.M1081I 0.44 benign(0.027) TCGA-56-7730-01 6 39874577 39874577 T C MOCS1 3'UTR 0.19 TCGA-56-7730-01 6 41168835 41168835 A G TREML2 5'UTR 0.45 TCGA-56-7730-01 6 46660761 46660761 T C TDRD6 Silent p.F1632F 0.49 TCGA-56-7730-01 6 46675880 46675880 A T PLA2G7 Missense_Mutation p.D296E 0.19 deleterious(0) probably_damaging(1) TCGA-56-7730-01 6 46851940 46851940 A C GPR116 Missense_Mutation p.C133G 0.35 deleterious(0) probably_damaging(0.999) TCGA-56-7730-01 6 50011340 50011340 G T DEFB112 Missense_Mutation p.P97Q 0.48 tolerated_low_confidence(0.08) benign(0) TCGA-56-7730-01 6 66115079 66115079 G T EYS Silent p.I348I 0.32 TCGA-56-7730-01 6 75969097 75969097 G A TMEM30A Silent p.P217P 0.30 TCGA-56-7730-01 6 79752720 79752720 G A PHIP Missense_Mutation p.A147V 0.17 tolerated(1) benign(0.001) TCGA-56-7730-01 6 88854734 88854734 G A CNR1 Missense_Mutation p.S87L 0.37 deleterious_low_confidence(0.01) benign(0.058) TCGA-56-7730-01 6 90082254 90082254 A C RRAGD Missense_Mutation p.I318S 0.17 tolerated(0.13) benign(0.01) TCGA-56-7730-01 6 94066717 94066717 T A EPHA7 Missense_Mutation p.S348C 0.41 tolerated(0.1) possibly_damaging(0.696) TCGA-56-7730-01 7 100681153 100681153 A C MUC17 Missense_Mutation p.Q2152H 0.06 unknown(0) TCGA-56-7730-01 7 100684370 100684370 A G MUC17 Missense_Mutation p.T3225A 0.29 benign(0.229) TCGA-56-7730-01 7 122755677 122755677 A T SLC13A1 Silent p.G561G 0.31 TCGA-56-7730-01 7 142510533 142510533 G C TRBV30 Missense_Mutation p.P25A 0.50 deleterious(0) probably_damaging(0.996) TCGA-56-7730-01 7 150439935 150439935 G T GIMAP5 Silent p.G236G 0.26 TCGA-56-7730-01 7 1586682 1586682 G C TMEM184A Missense_Mutation p.P383R 0.52 tolerated(0.11) benign(0.005) TCGA-56-7730-01 7 27141754 27141754 G T HOXA2 Silent p.T122T 0.60 TCGA-56-7730-01 7 31614213 31614213 G T CCDC129 Missense_Mutation p.G178V 0.45 deleterious(0.02) possibly_damaging(0.713) TCGA-56-7730-01 7 31682916 31682916 C A CCDC129 Silent p.P670P 0.49 TCGA-56-7730-01 7 32528918 32528918 C T LSM5 Missense_Mutation p.V29M 0.13 tolerated(0.06) possibly_damaging(0.847) TCGA-56-7730-01 7 42949433 42949433 C A C7orf25 Missense_Mutation p.S414I 0.26 tolerated(0.18) benign(0.066) TCGA-56-7730-01 7 44806178 44806178 T A ZMIZ2 Silent p.G857G 0.57 TCGA-56-7730-01 7 5541279 5541279 C T FBXL18 Silent p.T207T 0.16 TCGA-56-7730-01 7 56171962 56171962 C T CHCHD2 Missense_Mutation p.G86E 0.18 deleterious(0.03) possibly_damaging(0.882) TCGA-56-7730-01 7 72992788 72992788 C T TBL2 Nonsense_Mutation p.W31* 0.70 TCGA-56-7730-01 7 73944165 73944165 T C GTF2IRD1 Missense_Mutation p.F430L 0.23 deleterious(0.02) possibly_damaging(0.534) TCGA-56-7730-01 7 82785506 82785506 T A PCLO Missense_Mutation p.S151C 0.58 unknown(0) TCGA-56-7730-01 7 88963002 88963002 T C ZNF804B Missense_Mutation p.S236P 0.55 tolerated(0.07) benign(0.037) TCGA-56-7730-01 7 99799033 99799033 G A GATS 3'UTR 0.33 TCGA-56-7730-01 8 113275906 113275906 C G CSMD3 Missense_Mutation p.G3275A 0.82 tolerated(0.09) benign(0.163) TCGA-56-7730-01 8 125990053 125990053 G A ZNF572 Missense_Mutation p.E515K 0.62 tolerated_low_confidence(0.11) benign(0.002) TCGA-56-7730-01 8 132052082 132052082 C A ADCY8 Missense_Mutation p.L166F 0.84 deleterious(0) probably_damaging(0.986) TCGA-56-7730-01 8 133882057 133882057 G T TG Missense_Mutation p.G87V 0.83 deleterious(0) possibly_damaging(0.879) TCGA-56-7730-01 8 139164463 139164463 G T FAM135B Missense_Mutation p.S752Y 0.68 deleterious(0) probably_damaging(0.999) TCGA-56-7730-01 8 24262821 24262821 T C ADAMDEC1 3'UTR 0.41 TCGA-56-7730-01 8 38125474 38125474 G A PPAPDC1B Silent p.A93A 0.16 TCGA-56-7730-01 8 39550142 39550142 A T ADAM18 Missense_Mutation p.R615S 0.42 tolerated(0.1) benign(0.164) TCGA-56-7730-01 8 43152481 43152481 C G POTEA RNA 0.06 TCGA-56-7730-01 8 6377413 6377413 G A ANGPT2 Missense_Mutation p.T301I 0.05 tolerated(0.1) possibly_damaging(0.622) TCGA-56-7730-01 8 6385151 6385151 G C ANGPT2 Missense_Mutation p.S164C 0.17 deleterious(0) probably_damaging(0.999) TCGA-56-7730-01 8 70982070 70982070 G C PRDM14 Missense_Mutation p.A9G 0.62 deleterious(0.05) benign(0.04) TCGA-56-7730-01 8 7808226 7808226 T C ZNF705B Missense_Mutation p.M92T 0.52 tolerated(0.41) possibly_damaging(0.599) TCGA-56-7730-01 8 93029632 93029632 G T RUNX1T1 Intron 0.68 TCGA-56-7730-01 9 104356816 104356816 G C PPP3R2 Missense_Mutation p.Q133E 0.80 deleterious(0) possibly_damaging(0.852) TCGA-56-7730-01 9 104356817 104356817 G T PPP3R2 Silent p.L132L 0.79 TCGA-56-7730-01 9 112686112 112686112 T A PALM2-AKAP2 Missense_Mutation p.F119I 0.33 tolerated(1) benign(0.035) TCGA-56-7730-01 9 112900813 112900813 G T PALM2-AKAP2 Missense_Mutation p.A997S 0.68 tolerated(0.05) benign(0.077) TCGA-56-7730-01 9 112930810 112930810 T C PALM2-AKAP2 3'UTR 0.35 TCGA-56-7730-01 9 122000954 122000954 C - BRINP1 Frame_Shift_Del p.E222Rfs*11 0.29 TCGA-56-7730-01 9 130242207 130242207 G A LRSAM1 Silent p.T331T 0.15 TCGA-56-7730-01 9 133927933 133927933 C G LAMC3 Missense_Mutation p.F562L 0.29 tolerated(0.47) benign(0.162) TCGA-56-7730-01 9 133943579 133943579 C T LAMC3 Missense_Mutation p.P903L 0.68 tolerated(0.08) possibly_damaging(0.643) TCGA-56-7730-01 9 134363281 134363281 G A PRRC2B Missense_Mutation p.S2008N 0.19 tolerated(0.27) benign(0.005) TCGA-56-7730-01 9 21440781 21440781 C A IFNA1 Missense_Mutation p.T92N 0.50 tolerated(0.28) benign(0.008) TCGA-56-7730-01 9 6413616 6413616 C A UHRF2 Nonsense_Mutation p.C42* 0.84 TCGA-56-7730-01 9 79229446 79229446 C T PRUNE2 3'UTR 0.18 TCGA-56-7730-01 9 79323757 79323757 C T PRUNE2 Missense_Mutation p.A1145T 0.54 tolerated(0.19) benign(0.019) TCGA-56-7730-01 9 79932575 79932575 A G VPS13A Silent p.P1639P 0.17 TCGA-56-7730-01 9 79984297 79984297 G A VPS13A Missense_Mutation p.G2879D 0.32 deleterious(0) probably_damaging(0.95) TCGA-56-7730-01 9 94495523 94495523 G T ROR2 Missense_Mutation p.S273Y 0.79 deleterious(0.01) probably_damaging(0.936) TCGA-56-7730-01 9 96416698 96416698 G T PHF2 Nonsense_Mutation p.E265* 0.28 TCGA-56-7730-01 X 101857267 101857267 C G ARMCX5 Silent p.T66T 0.93 TCGA-56-7730-01 X 105450001 105450002 GT - MUM1L1 Frame_Shift_Del p.C193Rfs*10 0.87 TCGA-56-7730-01 X 12809685 12809685 G A PRPS2 Silent p.L23L 0.42 TCGA-56-7730-01 X 131762619 131762619 C G HS6ST2 Missense_Mutation p.D524H 0.87 deleterious(0) probably_damaging(1) TCGA-56-7730-01 X 140994393 140994393 G T MAGEC1 Missense_Mutation p.E401D 0.86 deleterious_low_confidence(0.01) benign(0.217) TCGA-56-7730-01 X 153421822 153421822 G A OPN1LW Silent p.V266V 0.86 TCGA-56-7730-01 X 155232674 155232674 G A IL9R Silent p.G44G 0.49 TCGA-56-7730-01 X 18593560 18593560 G A CDKL5 Missense_Mutation p.A78T 0.83 deleterious_low_confidence(0) benign(0.286) TCGA-56-7730-01 X 26157841 26157841 G C MAGEB18 Missense_Mutation p.D247H 0.71 deleterious(0) probably_damaging(0.996) TCGA-56-7730-01 X 37026475 37026475 A T FAM47C 5'UTR 0.86 TCGA-56-7730-01 X 39933250 39933250 A G BCOR Missense_Mutation p.V450A 0.13 tolerated(0.69) benign(0.007) TCGA-56-7730-01 X 76937332 76937332 T A ATRX Missense_Mutation p.N1139I 0.85 possibly_damaging(0.534) TCGA-56-7730-01 X 83128522 83128522 C A CYLC1 Nonsense_Mutation p.S269* 0.90 TCGA-56-7730-01 X 84362894 84362894 G T SATL1 Missense_Mutation p.P361T 0.86 tolerated(0.5) possibly_damaging(0.725) TCGA-56-7730-01 X 86068262 86068262 G T DACH2 Missense_Mutation p.V507F 0.74 deleterious(0.04) benign(0.211) TCGA-56-7730-01 X 91090979 91090979 C A PCDH11X Missense_Mutation p.T159N 0.84 tolerated(0.18) benign(0.005) TCGA-56-7730-01 X 96213009 96213009 A T DIAPH2 Missense_Mutation p.L599F 0.89 tolerated(0.71) unknown(0) TCGA-56-7730-01 Y 23557033 23557033 C A RBMY2EP RNA 0.84 TCGA-56-7731-01 10 102741280 102741280 A G MRPL43 Missense_Mutation p.S226P 0.07 deleterious_low_confidence(0) unknown(0) TCGA-56-7731-01 10 115402703 115402703 A G NRAP Missense_Mutation p.F402S 0.09 deleterious(0) possibly_damaging(0.821) TCGA-56-7731-01 10 117059660 117059660 T C ATRNL1 Silent p.S844S 0.10 TCGA-56-7731-01 10 125601864 125601864 C A CPXM2 Splice_Site p.X218_splice 0.13 TCGA-56-7731-01 10 17171788 17171788 G C CUBN 5'UTR 0.22 TCGA-56-7731-01 10 17891703 17891703 G T MRC1L1 Missense_Mutation p.G395V 0.12 probably_damaging(0.984) TCGA-56-7731-01 10 3200272 3200272 C A PITRM1 Missense_Mutation p.V404F 0.17 deleterious(0) possibly_damaging(0.814) TCGA-56-7731-01 10 35360253 35360253 G C CUL2 Missense_Mutation p.T17S 0.13 tolerated_low_confidence(0.62) possibly_damaging(0.486) TCGA-56-7731-01 10 37422940 37422940 A G ANKRD30A Silent p.G182G 0.10 TCGA-56-7731-01 10 50121553 50121553 G T LRRC18 Missense_Mutation p.N216K 0.12 tolerated(0.81) benign(0.002) TCGA-56-7731-01 10 64136173 64136173 T C ZNF365 Missense_Mutation p.V74A 0.08 tolerated_low_confidence(0.3) benign(0.174) TCGA-56-7731-01 10 71868815 71868815 G A H2AFY2 Missense_Mutation p.A269T 0.07 tolerated(0.09) benign(0.381) TCGA-56-7731-01 10 72538325 72538325 C T TBATA Silent p.L165L 0.10 TCGA-56-7731-01 10 75011617 75011617 T C MRPS16 Missense_Mutation p.S60G 0.09 tolerated(0.37) benign(0.006) TCGA-56-7731-01 10 92654621 92654621 C A RPP30 Silent p.L174L 0.12 TCGA-56-7731-01 11 103107203 103107203 A G DYNC2H1 Missense_Mutation p.I3252V 0.14 benign(0.002) TCGA-56-7731-01 11 114442125 114442125 G T NXPE4 Missense_Mutation p.N390K 0.10 tolerated(0.11) benign(0.046) TCGA-56-7731-01 11 20949941 20949941 C T NELL1 Nonsense_Mutation p.R305* 0.16 TCGA-56-7731-01 11 22296127 22296127 G C ANO5 Missense_Mutation p.A750P 0.08 deleterious(0) probably_damaging(0.958) TCGA-56-7731-01 11 32119958 32119958 G C RCN1 Missense_Mutation p.D171H 0.07 deleterious(0) probably_damaging(0.998) TCGA-56-7731-01 11 5020635 5020635 T A OR51L1 Missense_Mutation p.S141R 0.10 tolerated(0.21) benign(0.004) TCGA-56-7731-01 11 55579625 55579625 T A OR5L1 Missense_Mutation p.M228K 0.06 deleterious(0) possibly_damaging(0.903) TCGA-56-7731-01 11 55579644 55579644 G T OR5L1 Missense_Mutation p.R234S 0.06 deleterious(0) probably_damaging(0.982) TCGA-56-7731-01 11 55606864 55606864 C A OR5D16 Missense_Mutation p.L213I 0.07 tolerated(0.21) possibly_damaging(0.58) TCGA-56-7731-01 11 55703793 55703793 G C OR5I1 Silent p.V28V 0.08 TCGA-56-7731-01 11 56043271 56043271 G T OR5T1 Missense_Mutation p.G53C 0.09 deleterious(0) probably_damaging(0.992) TCGA-56-7731-01 11 57947066 57947066 C T OR9Q1 Silent p.L50L 0.09 TCGA-56-7731-01 11 57995651 57995651 T A OR10Q1 Missense_Mutation p.I233F 0.13 deleterious(0) possibly_damaging(0.905) TCGA-56-7731-01 11 59132562 59132562 A T OR5AN1 Missense_Mutation p.S211C 0.09 deleterious(0.01) probably_damaging(0.969) TCGA-56-7731-01 11 5969442 5969442 C G OR56A3 Missense_Mutation p.A289G 0.14 deleterious(0) possibly_damaging(0.595) TCGA-56-7731-01 11 60183388 60183388 C T MS4A14 Missense_Mutation p.S349L 0.19 tolerated(0.3) benign(0.001) TCGA-56-7731-01 11 6048826 6048826 G T OR56A1 Missense_Mutation p.P37T 0.06 deleterious(0) benign(0.115) TCGA-56-7731-01 11 67817661 67817661 G T TCIRG1 Missense_Mutation p.G726C 0.07 deleterious(0) probably_damaging(1) TCGA-56-7731-01 11 77911206 77911206 G A USP35 Missense_Mutation p.V322I 0.05 deleterious(0) unknown(0) TCGA-56-7731-01 11 8060300 8060300 G A TUB 5'UTR 0.09 TCGA-56-7731-01 11 89537512 89537512 G T TRIM49 Missense_Mutation p.N42K 0.07 tolerated(0.14) benign(0.04) TCGA-56-7731-01 12 100707203 100707203 A T SCYL2 Missense_Mutation p.S286C 0.13 tolerated(0.06) benign(0.319) TCGA-56-7731-01 12 104681196 104681196 A G TXNRD1 Intron 0.09 TCGA-56-7731-01 12 105151586 105151586 G T CHST11 3'UTR 0.08 TCGA-56-7731-01 12 121004661 121004661 A G RNF10 Missense_Mutation p.Q640R 0.07 tolerated(0.25) benign(0.119) TCGA-56-7731-01 12 122091022 122091022 G A MORN3 Missense_Mutation p.R203C 0.17 deleterious(0) probably_damaging(0.994) TCGA-56-7731-01 12 129566382 129566382 C A TMEM132D Missense_Mutation p.Q615H 0.09 deleterious(0) possibly_damaging(0.605) TCGA-56-7731-01 12 14577858 14577858 G T ATF7IP Nonsense_Mutation p.E337* 0.08 TCGA-56-7731-01 12 20903808 20903808 A G SLCO1C1 Silent p.S666S 0.09 TCGA-56-7731-01 12 21422458 21422459 - A SLCO1A2 3'UTR 0.17 TCGA-56-7731-01 12 27809547 27809547 A G PPFIBP1 Splice_Site p.X264_splice 0.09 TCGA-56-7731-01 12 39716519 39716519 C A KIF21A Nonsense_Mutation p.E1208* 0.05 TCGA-56-7731-01 12 40114666 40114666 G A C12orf40 Missense_Mutation p.M524I 0.14 tolerated(0.07) benign(0.001) TCGA-56-7731-01 12 53042805 53042805 C A KRT2 Missense_Mutation p.V315F 0.12 tolerated(0.16) benign(0.079) TCGA-56-7731-01 12 57424913 57424913 T C MYO1A Missense_Mutation p.N799D 0.19 deleterious(0.02) benign(0.001) TCGA-56-7731-01 12 63963073 63963073 C A DPY19L2 Missense_Mutation p.R686I 0.04 deleterious(0.01) possibly_damaging(0.637) TCGA-56-7731-01 12 7647934 7647934 A G CD163 Missense_Mutation p.V388A 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-56-7731-01 12 81102369 81102369 G T MYF6 Missense_Mutation p.G196W 0.11 deleterious(0.02) benign(0.103) TCGA-56-7731-01 12 8234869 8234869 C T NECAP1 5'UTR 0.43 TCGA-56-7731-01 12 91371893 91371893 T A EPYC Silent p.T104T 0.10 TCGA-56-7731-01 13 26975730 26975730 C T CDK8 Missense_Mutation p.S413L 0.09 deleterious_low_confidence(0.01) benign(0.081) TCGA-56-7731-01 13 31232810 31232810 A T USPL1 Missense_Mutation p.S866C 0.05 deleterious(0.04) possibly_damaging(0.893) TCGA-56-7731-01 13 32355819 32355819 G A RXFP2 Missense_Mutation p.G266D 0.07 tolerated(0.05) benign(0.059) TCGA-56-7731-01 13 36764163 36764163 A G SOHLH2 Silent p.L264L 0.05 TCGA-56-7731-01 13 73348185 73348185 C G DIS3 Missense_Mutation p.V334L 0.12 tolerated(0.4) benign(0.001) TCGA-56-7731-01 13 78475289 78475289 T C EDNRB Silent p.P375P 0.15 TCGA-56-7731-01 13 92408649 92408649 T C GPC5 Missense_Mutation p.W419R 0.09 deleterious(0) probably_damaging(1) TCGA-56-7731-01 13 92408650 92408650 G T GPC5 Missense_Mutation p.W419L 0.10 deleterious(0) probably_damaging(1) TCGA-56-7731-01 14 100344834 100344834 G T EML1 Missense_Mutation p.R151S 0.11 tolerated(0.12) possibly_damaging(0.823) TCGA-56-7731-01 14 20296384 20296384 G T OR4N2 Silent p.T259T 0.09 TCGA-56-7731-01 14 20388859 20388859 T A OR4K5 Missense_Mutation p.S32T 0.10 tolerated(0.41) benign(0.418) TCGA-56-7731-01 14 20444085 20444085 G C OR4K15 Missense_Mutation p.M136I 0.08 tolerated(0.16) possibly_damaging(0.83) TCGA-56-7731-01 14 23884354 23884354 G T MYH7 Silent p.I1803I 0.11 TCGA-56-7731-01 14 31376126 31376126 T A STRN3 Silent p.P615P 0.08 TCGA-56-7731-01 14 31598530 31598530 A C HECTD1 Silent p.V1349V 0.12 TCGA-56-7731-01 14 44974455 44974455 G T FSCB Missense_Mutation p.P579Q 0.15 tolerated(0.06) possibly_damaging(0.766) TCGA-56-7731-01 14 47315063 47315063 T A MDGA2 Missense_Mutation p.E965D 0.13 deleterious(0) possibly_damaging(0.554) TCGA-56-7731-01 14 64936415 64936415 G A AKAP5 3'UTR 0.13 TCGA-56-7731-01 14 70633448 70633448 G A SLC8A3 Silent p.V564V 0.07 TCGA-56-7731-01 14 76173403 76173403 T A TTLL5 Missense_Mutation p.Y210N 0.08 deleterious(0) probably_damaging(0.988) TCGA-56-7731-01 14 77942411 77942411 G T ISM2 Missense_Mutation p.L415I 0.12 deleterious(0) possibly_damaging(0.874) TCGA-56-7731-01 14 79117522 79117522 G C NRXN3 5'UTR 0.13 TCGA-56-7731-01 14 79175806 79175806 A T NRXN3 Nonsense_Mutation p.K117* 0.06 TCGA-56-7731-01 14 90755211 90755211 T C NRDE2 Silent p.P836P 0.10 TCGA-56-7731-01 14 96777496 96777496 G T ATG2B Missense_Mutation p.N1373K 0.12 tolerated(0.06) benign(0.023) TCGA-56-7731-01 15 25219515 25219515 G A SNRPN 5'UTR 0.19 TCGA-56-7731-01 15 25330466 25330466 G C SNORD116-18 5'Flank 0.10 TCGA-56-7731-01 15 25468428 25468428 G C SNORD115-29 RNA 0.09 TCGA-56-7731-01 15 25475912 25475912 C - SNORD115-33 5'Flank 0.20 TCGA-56-7731-01 15 25601986 25601986 T A UBE3A Missense_Mutation p.E607V 0.11 deleterious(0) probably_damaging(0.959) TCGA-56-7731-01 15 31332465 31332465 C A TRPM1 Missense_Mutation p.E741D 0.18 deleterious(0) probably_damaging(0.914) TCGA-56-7731-01 15 32925260 32925260 G A ARHGAP11A Missense_Mutation p.A396T 0.10 tolerated(1) benign(0) TCGA-56-7731-01 15 35240515 35240515 T C AQR Missense_Mutation p.I94V 0.04 tolerated(0.05) benign(0.188) TCGA-56-7731-01 15 45847979 45847979 G T RP11-96O20.2 5'Flank 0.20 TCGA-56-7731-01 15 48782115 48782115 C T FBN1 Silent p.E1005E 0.07 TCGA-56-7731-01 15 52536651 52536651 T C MYO5C Silent p.Q764Q 0.11 TCGA-56-7731-01 15 57921930 57921930 A T GCOM1 Missense_Mutation p.S186C 0.13 deleterious(0.04) probably_damaging(0.944) TCGA-56-7731-01 15 72954704 72954704 C G GOLGA6B Missense_Mutation p.S320C 0.16 deleterious(0) possibly_damaging(0.843) TCGA-56-7731-01 15 76630230 76630230 A T ISL2 Missense_Mutation p.E57V 0.11 deleterious(0) possibly_damaging(0.809) TCGA-56-7731-01 15 84639375 84639375 T C ADAMTSL3 Missense_Mutation p.M877T 0.11 deleterious(0) benign(0.41) TCGA-56-7731-01 15 85383471 85383471 G A ALPK3 Missense_Mutation p.E523K 0.08 deleterious(0.02) possibly_damaging(0.772) TCGA-56-7731-01 15 89074194 89074194 C G DET1 Missense_Mutation p.G259A 0.15 deleterious(0.05) probably_damaging(0.998) TCGA-56-7731-01 15 91485697 91485697 C A UNC45A Silent p.R240R 0.17 TCGA-56-7731-01 16 1479329 1479329 C A C16orf91 Missense_Mutation p.R6M 0.08 deleterious_low_confidence(0) benign(0.006) TCGA-56-7731-01 16 20976463 20976463 G T DNAH3 Missense_Mutation p.L2915M 0.12 deleterious(0) probably_damaging(0.999) TCGA-56-7731-01 16 27363941 27363941 G T IL4R Missense_Mutation p.R198S 0.08 tolerated(0.91) benign(0.003) TCGA-56-7731-01 16 34712307 34712307 C A RP11-80F22.9 RNA 0.18 TCGA-56-7731-01 16 57756682 57756682 T C CCDC135 Missense_Mutation p.L446P 0.10 deleterious(0) probably_damaging(0.979) TCGA-56-7731-01 16 57758565 57758565 G T CCDC135 Missense_Mutation p.V526F 0.09 tolerated(0.07) possibly_damaging(0.751) TCGA-56-7731-01 16 71570767 71570767 G T CHST4 Missense_Mutation p.G63W 0.12 deleterious(0) probably_damaging(0.998) TCGA-56-7731-01 16 84900597 84900597 G A CRISPLD2 Silent p.R268R 0.11 TCGA-56-7731-01 17 18394606 18394606 C A LGALS9C Missense_Mutation p.T199K 0.18 tolerated(0.11) possibly_damaging(0.587) TCGA-56-7731-01 17 27005625 27005625 A G SUPT6H Silent p.L393L 0.10 TCGA-56-7731-01 17 28544262 28544262 C T SLC6A4 Nonsense_Mutation p.W253* 0.06 TCGA-56-7731-01 17 32583867 32583867 G C CCL2 3'UTR 0.15 TCGA-56-7731-01 17 3324424 3324424 G T OR3A3 Missense_Mutation p.C188F 0.10 deleterious(0) probably_damaging(0.999) TCGA-56-7731-01 17 33497141 33497141 G A UNC45B Missense_Mutation p.C519Y 0.10 deleterious(0) probably_damaging(0.961) TCGA-56-7731-01 17 33689938 33689938 G C SLFN11 Missense_Mutation p.L297V 0.08 tolerated(0.81) benign(0.007) TCGA-56-7731-01 17 34497281 34497281 T A TBC1D3B Missense_Mutation p.Q212L 0.16 deleterious(0.02) possibly_damaging(0.685) TCGA-56-7731-01 17 37187981 37187981 G T CTD-2206N4.2 5'Flank 0.10 TCGA-56-7731-01 17 39296661 39296661 G T KRTAP4-6 Missense_Mutation p.Q27K 0.07 tolerated(0.08) unknown(0) TCGA-56-7731-01 17 41719227 41719227 G A MEOX1 3'UTR 0.12 TCGA-56-7731-01 17 46862527 46862527 C T TTLL6 Missense_Mutation p.D600N 0.08 deleterious(0.04) possibly_damaging(0.471) TCGA-56-7731-01 17 48594717 48594717 C A MYCBPAP Missense_Mutation p.R133S 0.12 deleterious(0) probably_damaging(1) TCGA-56-7731-01 17 57232547 57232547 G T SKA2 5'UTR 0.08 TCGA-56-7731-01 17 65341864 65341864 T C PSMD12 Missense_Mutation p.Y302C 0.15 tolerated(0.1) probably_damaging(0.988) TCGA-56-7731-01 17 6683631 6683631 A T FBXO39 Silent p.S148S 0.10 TCGA-56-7731-01 17 7980323 7980323 G A ALOX12B Silent p.C420C 0.14 TCGA-56-7731-01 18 14105526 14105526 T C ZNF519 Missense_Mutation p.H338R 0.12 deleterious(0.01) probably_damaging(0.913) TCGA-56-7731-01 18 28714009 28714009 A G DSC1 Missense_Mutation p.L654S 0.08 tolerated(0.4) benign(0.118) TCGA-56-7731-01 18 33689538 33689538 C A SLC39A6 3'UTR 0.10 TCGA-56-7731-01 18 40503653 40503653 G T RIT2 Missense_Mutation p.R104S 0.08 deleterious(0.01) probably_damaging(0.916) TCGA-56-7731-01 18 42532731 42532731 G C SETBP1 Silent p.L1142L 0.16 TCGA-56-7731-01 18 59221606 59221606 C A CDH20 Missense_Mutation p.P695H 0.08 tolerated(0.46) benign(0.205) TCGA-56-7731-01 18 61262385 61262385 G T SERPINB13 Silent p.V246V 0.10 TCGA-56-7731-01 19 15739184 15739184 T A CYP4F8 RNA 0.10 TCGA-56-7731-01 19 32971327 32971327 G T DPY19L3 Missense_Mutation p.R618M 0.16 deleterious(0.03) probably_damaging(0.987) TCGA-56-7731-01 19 34890214 34890214 G T GPI Missense_Mutation p.D469Y 0.12 deleterious_low_confidence(0) possibly_damaging(0.516) TCGA-56-7731-01 19 35775705 35775705 C G HAMP Missense_Mutation p.A35G 0.07 tolerated(0.1) benign(0.022) TCGA-56-7731-01 19 3600368 3600368 G C TBXA2R Missense_Mutation p.H89D 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-56-7731-01 19 36335146 36335146 C A NPHS1 Splice_Site p.X691_splice 0.11 TCGA-56-7731-01 19 44803820 44803820 A G ZNF235 Silent p.S27S 0.11 TCGA-56-7731-01 19 47425223 47425226 AAGG - ARHGAP35 Frame_Shift_Del p.R1098Mfs*45 0.20 TCGA-56-7731-01 19 50666283 50666283 G T IZUMO2 Missense_Mutation p.L57M 0.12 tolerated(0.06) possibly_damaging(0.82) TCGA-56-7731-01 19 52219613 52219613 C G HAS1 Missense_Mutation p.Q319H 0.07 deleterious(0.03) benign(0.035) TCGA-56-7731-01 19 52505426 52505426 T A ZNF615 Missense_Mutation p.S42C 0.09 deleterious(0) benign(0.298) TCGA-56-7731-01 19 53014145 53014145 C G ZNF578 Missense_Mutation p.Q171E 0.04 deleterious(0.04) probably_damaging(0.968) TCGA-56-7731-01 19 53959562 53959562 A T ZNF761 RNA 0.08 TCGA-56-7731-01 19 54756383 54756383 C G LILRB5 Missense_Mutation p.G502R 0.11 tolerated(0.12) benign(0.06) TCGA-56-7731-01 19 55107230 55107230 G T LILRA1 Missense_Mutation p.R263L 0.07 tolerated(0.14) possibly_damaging(0.462) TCGA-56-7731-01 19 55442033 55442033 A T NLRP7 Missense_Mutation p.L882I 0.07 deleterious(0.01) probably_damaging(1) TCGA-56-7731-01 19 55450398 55450398 G A NLRP7 Missense_Mutation p.H597Y 0.12 deleterious(0.03) possibly_damaging(0.691) TCGA-56-7731-01 19 56407339 56407339 G T NLRP13 Nonsense_Mutation p.S1035* 0.08 TCGA-56-7731-01 19 57641714 57641714 T A USP29 Silent p.V557V 0.11 TCGA-56-7731-01 19 6921723 6921723 G A EMR1 Splice_Site p.X541_splice 0.15 TCGA-56-7731-01 19 6924867 6924867 A G EMR1 Missense_Mutation p.H657R 0.08 deleterious(0.01) benign(0.181) TCGA-56-7731-01 19 9047384 9047384 C G MUC16 Missense_Mutation p.S11416T 0.10 benign(0.032) TCGA-56-7731-01 19 9065732 9065732 T C MUC16 Silent p.K7238K 0.11 TCGA-56-7731-01 19 9088889 9088889 T C MUC16 Missense_Mutation p.T976A 0.10 unknown(0) TCGA-56-7731-01 1 111958993 111958993 C A OVGP1 Missense_Mutation p.G370C 0.09 deleterious(0.02) probably_damaging(1) TCGA-56-7731-01 1 144931512 144931512 G A PDE4DIP Intron 0.05 TCGA-56-7731-01 1 153430332 153430332 A T S100A7 Missense_Mutation p.Y86N 0.14 deleterious(0) probably_damaging(0.981) TCGA-56-7731-01 1 156214634 156214634 A G PAQR6 Silent p.H120H 0.12 TCGA-56-7731-01 1 156352098 156352098 C A RHBG Intron 0.21 TCGA-56-7731-01 1 157771735 157771735 G A FCRL1 Missense_Mutation p.R286C 0.11 tolerated(0.15) benign(0.082) TCGA-56-7731-01 1 159277543 159277543 C A FCER1A Missense_Mutation p.R199S 0.06 tolerated(0.61) benign(0.008) TCGA-56-7731-01 1 159856406 159856406 A T CCDC19 Missense_Mutation p.L221Q 0.10 deleterious(0.03) probably_damaging(0.983) TCGA-56-7731-01 1 161166605 161166605 G A ADAMTS4 Silent p.F233F 0.08 TCGA-56-7731-01 1 162569138 162569138 G T UAP1 Silent p.V501V 0.10 TCGA-56-7731-01 1 173455536 173455536 G A PRDX6 Nonsense_Mutation p.W181* 0.06 TCGA-56-7731-01 1 174200313 174200313 G T RABGAP1L Missense_Mutation p.G121V 0.14 tolerated(0.32) benign(0.001) TCGA-56-7731-01 1 176525951 176525951 G A PAPPA2 Missense_Mutation p.G165S 0.12 tolerated_low_confidence(0.79) benign(0) TCGA-56-7731-01 1 176679174 176679174 G T PAPPA2 Missense_Mutation p.E1171D 0.09 deleterious(0.03) probably_damaging(0.996) TCGA-56-7731-01 1 176738886 176738886 C T PAPPA2 Silent p.C1489C 0.11 TCGA-56-7731-01 1 177030252 177030252 C - ASTN1 Frame_Shift_Del p.A145Qfs*5 0.09 TCGA-56-7731-01 1 190423838 190423838 T A BRINP3 Silent p.T61T 0.17 TCGA-56-7731-01 1 197073882 197073883 - A ASPM Frame_Shift_Ins p.C1500Lfs*9 0.16 TCGA-56-7731-01 1 206225110 206225110 C A AVPR1B Missense_Mutation p.H224N 0.07 deleterious(0.03) possibly_damaging(0.588) TCGA-56-7731-01 1 212798518 212798518 G T FAM71A Missense_Mutation p.G100V 0.23 tolerated(0.09) probably_damaging(0.968) TCGA-56-7731-01 1 216737607 216737607 G T ESRRG Silent p.A284A 0.08 TCGA-56-7731-01 1 222695923 222695923 C A HHIPL2 3'UTR 0.10 TCGA-56-7731-01 1 22902747 22902747 C T EPHA8 Missense_Mutation p.P66L 0.08 deleterious(0.04) probably_damaging(1) TCGA-56-7731-01 1 22915668 22915668 C T EPHA8 Silent p.A428A 0.09 TCGA-56-7731-01 1 241676985 241676985 A T FH Nonsense_Mutation p.L99* 0.07 TCGA-56-7731-01 1 248525363 248525363 C A OR2T4 Missense_Mutation p.P161T 0.09 deleterious(0) probably_damaging(0.978) TCGA-56-7731-01 1 32043052 32043052 G C TINAGL1 Silent p.P101P 0.15 TCGA-56-7731-01 1 36758276 36758276 G T THRAP3 Missense_Mutation p.A666S 0.09 tolerated(0.46) probably_damaging(0.971) TCGA-56-7731-01 1 39759269 39759269 C T MACF1 Missense_Mutation p.S716L 0.11 benign(0.002) TCGA-56-7731-01 1 44437233 44437233 G C DPH2 Missense_Mutation p.G220A 0.10 deleterious(0) probably_damaging(0.999) TCGA-56-7731-01 1 65309864 65309864 C A JAK1 Missense_Mutation p.E762D 0.08 deleterious(0) probably_damaging(0.978) TCGA-56-7731-01 1 6648235 6648235 G - ZBTB48 Frame_Shift_Del p.G499Afs*39 0.10 TCGA-56-7731-01 1 68948964 68948964 G C DEPDC1 Intron 0.06 TCGA-56-7731-01 1 79116058 79116058 A G IFI44 Missense_Mutation p.I60V 0.11 tolerated(0.93) benign(0.076) TCGA-56-7731-01 1 79412108 79412108 T C ELTD1 Missense_Mutation p.D59G 0.12 deleterious_low_confidence(0) probably_damaging(0.911) TCGA-56-7731-01 1 86437058 86437058 C T COL24A1 Missense_Mutation p.G795R 0.20 deleterious(0) probably_damaging(0.998) TCGA-56-7731-01 1 99422208 99422208 A G LPPR5 Silent p.C109C 0.12 TCGA-56-7731-01 20 1426317 1426317 C G NSFL1C Missense_Mutation p.S317T 0.19 tolerated(1) benign(0) TCGA-56-7731-01 20 20168613 20168613 T - C20orf26 Frame_Shift_Del p.G476Vfs*11 0.11 TCGA-56-7731-01 20 21142965 21142965 A T RP4-777D9.2 Intron 0.12 TCGA-56-7731-01 20 29956432 29956432 C A DEFB118 5'UTR 0.09 TCGA-56-7731-01 20 30028491 30028491 C G DEFB123 5'UTR 0.10 TCGA-56-7731-01 20 36641066 36641066 G A TTI1 Missense_Mutation p.L385F 0.11 deleterious(0) probably_damaging(0.998) TCGA-56-7731-01 20 3677239 3677239 C A SIGLEC1 Missense_Mutation p.V893F 0.11 deleterious(0) probably_damaging(0.986) TCGA-56-7731-01 20 37547208 37547208 G A PPP1R16B Missense_Mutation p.V535I 0.13 deleterious(0.01) probably_damaging(0.995) TCGA-56-7731-01 20 44755278 44755278 G T CD40 Splice_Site p.X166_splice 0.08 TCGA-56-7731-01 20 5843793 5843793 G T C20orf196 Missense_Mutation p.R101I 0.16 tolerated(0.11) possibly_damaging(0.483) TCGA-56-7731-01 20 62121946 62121946 G T EEF1A2 Silent p.G305G 0.15 TCGA-56-7731-01 20 62839795 62839795 G T MYT1 Missense_Mutation p.A416S 0.10 benign(0.009) TCGA-56-7731-01 21 17177552 17177552 C G USP25 Missense_Mutation p.A252G 0.09 deleterious(0) possibly_damaging(0.694) TCGA-56-7731-01 21 22906976 22906976 G T NCAM2 Nonsense_Mutation p.E801* 0.10 TCGA-56-7731-01 21 22906977 22906977 A C NCAM2 Missense_Mutation p.E801A 0.08 deleterious(0) benign(0.182) TCGA-56-7731-01 21 43959719 43959719 T C SLC37A1 Missense_Mutation p.Y150H 0.19 tolerated(0.05) probably_damaging(0.949) TCGA-56-7731-01 21 43979097 43979097 A T SLC37A1 Silent p.S293S 0.12 TCGA-56-7731-01 22 17629392 17629392 T C CECR5 Missense_Mutation p.H130R 0.13 deleterious(0) possibly_damaging(0.665) TCGA-56-7731-01 22 17984030 17984030 C T CECR2 Silent p.C243C 0.14 TCGA-56-7731-01 22 29457831 29457831 T C C22orf31 5'UTR 0.19 TCGA-56-7731-01 22 32272206 32272206 G A DEPDC5 Missense_Mutation p.G1245S 0.09 deleterious(0) probably_damaging(1) TCGA-56-7731-01 22 34046415 34046415 C A LARGE Missense_Mutation p.A116S 0.11 tolerated_low_confidence(0.35) benign(0.035) TCGA-56-7731-01 22 39262985 39262985 C A CBX6 Silent p.T156T 0.18 TCGA-56-7731-01 22 39714472 39714472 G T RPL3 Silent p.L43L 0.11 TCGA-56-7731-01 22 42608177 42608177 C A TCF20 Silent p.R1045R 0.07 TCGA-56-7731-01 22 43996074 43996074 C T EFCAB6 Silent p.S917S 0.16 TCGA-56-7731-01 2 1093883 1093883 G A SNTG2 Missense_Mutation p.R71H 0.11 tolerated(1) benign(0) TCGA-56-7731-01 2 11355209 11355209 C A ROCK2 Missense_Mutation p.D565Y 0.06 deleterious(0.01) possibly_damaging(0.535) TCGA-56-7731-01 2 120734709 120734709 A T PTPN4 3'UTR 0.15 TCGA-56-7731-01 2 125367388 125367388 G A CNTNAP5 Silent p.E588E 0.10 TCGA-56-7731-01 2 139308150 139308150 C G SPOPL Missense_Mutation p.S59C 0.07 tolerated(0.18) probably_damaging(0.911) TCGA-56-7731-01 2 155098682 155098682 A G GALNT13 Missense_Mutation p.I151V 0.13 tolerated(0.2) benign(0.155) TCGA-56-7731-01 2 162881367 162881367 C A DPP4 Missense_Mutation p.V324F 0.05 deleterious(0) possibly_damaging(0.905) TCGA-56-7731-01 2 163066463 163066463 C A FAP Missense_Mutation p.G349V 0.10 tolerated(0.24) benign(0.343) TCGA-56-7731-01 2 166019112 166019112 A G SCN3A Silent p.N307N 0.07 TCGA-56-7731-01 2 179501165 179501165 T A TTN Silent p.G13763G 0.13 TCGA-56-7731-01 2 179584950 179584950 G T TTN Missense_Mutation p.L7807I 0.08 TCGA-56-7731-01 2 179605602 179605602 G T TTN Missense_Mutation p.Q4120K 0.10 TCGA-56-7731-01 2 179647079 179647079 G T TTN Silent p.A1080A 0.06 TCGA-56-7731-01 2 179648973 179648973 T C TTN Missense_Mutation p.S867G 0.06 TCGA-56-7731-01 2 196837115 196837115 C G DNAH7 Missense_Mutation p.A637P 0.07 tolerated(0.26) benign(0.116) TCGA-56-7731-01 2 198273243 198273243 T C SF3B1 Missense_Mutation p.I323V 0.08 tolerated(0.68) benign(0.005) TCGA-56-7731-01 2 198351786 198351786 C A HSPD1 Missense_Mutation p.G569V 0.07 deleterious_low_confidence(0) unknown(0) TCGA-56-7731-01 2 207041615 207041615 C A GPR1 Missense_Mutation p.L119F 0.10 tolerated(0.07) possibly_damaging(0.513) TCGA-56-7731-01 2 207452819 207452819 G T ADAM23 Missense_Mutation p.R598L 0.11 deleterious(0.05) probably_damaging(0.981) TCGA-56-7731-01 2 21225719 21225719 G T APOB Nonsense_Mutation p.S4192* 0.10 TCGA-56-7731-01 2 215274923 215274923 G C SPAG16 Missense_Mutation p.G594R 0.16 deleterious(0.02) probably_damaging(0.973) TCGA-56-7731-01 2 219509657 219509657 G A ZNF142 Nonsense_Mutation p.Q528* 0.09 TCGA-56-7731-01 2 220379905 220379905 T C ASIC4 Silent p.A280A 0.11 TCGA-56-7731-01 2 231162164 231162164 C A SP140 Nonsense_Mutation p.S682* 0.06 TCGA-56-7731-01 2 233347283 233347283 T C ECEL1 Missense_Mutation p.Y574C 0.10 deleterious(0) probably_damaging(1) TCGA-56-7731-01 2 239157757 239157757 G A PER2 Silent p.R1188R 0.09 TCGA-56-7731-01 2 242757907 242757907 C T NEU4 Missense_Mutation p.P343S 0.12 tolerated(0.48) benign(0.006) TCGA-56-7731-01 2 27263622 27263622 G T TMEM214 Missense_Mutation p.A663S 0.10 tolerated(0.13) probably_damaging(0.983) TCGA-56-7731-01 2 31572958 31572958 C A XDH Missense_Mutation p.M921I 0.08 tolerated(0.11) benign(0.276) TCGA-56-7731-01 2 48915184 48915184 A G LHCGR Silent p.P584P 0.11 TCGA-56-7731-01 2 71817372 71817372 G A DYSF Missense_Mutation p.M1176I 0.09 tolerated(1) benign(0) TCGA-56-7731-01 2 75923337 75923337 T C GCFC2 Silent p.Q274Q 0.16 TCGA-56-7731-01 2 88874540 88874540 C A EIF2AK3 Nonsense_Mutation p.E821* 0.09 TCGA-56-7731-01 2 89309646 89309646 G T IGKV1-9 Missense_Mutation p.P62T 0.07 deleterious_low_confidence(0.02) possibly_damaging(0.804) TCGA-56-7731-01 2 89416890 89416890 G C IGKV1-17 Missense_Mutation p.S98R 0.09 deleterious(0.05) possibly_damaging(0.517) TCGA-56-7731-01 2 90060822 90060822 C G IGKV6D-21 Missense_Mutation p.Q57E 0.10 deleterious(0.01) probably_damaging(0.978) TCGA-56-7731-01 2 97751929 97751929 C G FAHD2B Missense_Mutation p.D157H 0.22 deleterious(0) probably_damaging(1) TCGA-56-7731-01 3 10050137 10050137 C G AC022007.5 RNA 0.12 TCGA-56-7731-01 3 108147380 108147380 C G MYH15 Missense_Mutation p.D1241H 0.10 deleterious(0) probably_damaging(0.909) TCGA-56-7731-01 3 110831183 110831183 G T PVRL3 Missense_Mutation p.G156V 0.06 deleterious(0.01) probably_damaging(0.994) TCGA-56-7731-01 3 140178418 140178418 G T CLSTN2 Missense_Mutation p.W343C 0.10 deleterious(0.03) probably_damaging(0.99) TCGA-56-7731-01 3 140178568 140178568 G C CLSTN2 Silent p.V393V 0.11 TCGA-56-7731-01 3 170824515 170824515 T A TNIK Intron 0.12 TCGA-56-7731-01 3 174951930 174951930 G T NAALADL2 Missense_Mutation p.R252I 0.15 tolerated(0.12) benign(0.01) TCGA-56-7731-01 3 195778883 195778883 G C TFRC Missense_Mutation p.A738G 0.07 deleterious(0) possibly_damaging(0.825) TCGA-56-7731-01 3 46944935 46944935 C T PTH1R Missense_Mutation p.P524L 0.13 tolerated(0.13) possibly_damaging(0.859) TCGA-56-7731-01 3 51697263 51697263 C T RAD54L2 Missense_Mutation p.R1411W 0.11 deleterious_low_confidence(0.03) possibly_damaging(0.859) TCGA-56-7731-01 3 73657760 73657760 G T PDZRN3 Silent p.R267R 0.14 TCGA-56-7731-01 3 9057399 9057399 C T SRGAP3 Silent p.V565V 0.10 TCGA-56-7731-01 3 97868311 97868311 T C OR5H14 Missense_Mutation p.F28L 0.21 deleterious(0.01) benign(0.32) TCGA-56-7731-01 3 97983348 97983348 C G OR5H6 Missense_Mutation p.P74A 0.06 deleterious(0) probably_damaging(0.97) TCGA-56-7731-01 3 98487374 98487374 G T ST3GAL6 Splice_Site p.X30_splice 0.06 TCGA-56-7731-01 3 9868896 9868896 C G TTLL3 Missense_Mutation p.Q507E 0.16 deleterious(0) possibly_damaging(0.539) TCGA-56-7731-01 4 122831509 122831509 A T TRPC3 Missense_Mutation p.L531Q 0.07 tolerated(0.38) benign(0.015) TCGA-56-7731-01 4 13339589 13339589 T C HSP90AB2P RNA 0.08 TCGA-56-7731-01 4 13604626 13604626 C - BOD1L1 Frame_Shift_Del p.V1300* 0.21 TCGA-56-7731-01 4 145916713 145916713 A G ANAPC10 Silent p.L124L 0.07 TCGA-56-7731-01 4 155749160 155749160 G C RBM46 Missense_Mutation p.A515P 0.16 tolerated_low_confidence(0.07) benign(0) TCGA-56-7731-01 4 156696172 156696172 G T GUCY1B3 Missense_Mutation p.D44Y 0.05 deleterious(0) probably_damaging(0.918) TCGA-56-7731-01 4 159493861 159493861 G T RXFP1 Missense_Mutation p.G21C 0.05 tolerated(0.06) benign(0.003) TCGA-56-7731-01 4 16900041 16900041 G T LDB2 Missense_Mutation p.P23Q 0.16 deleterious(0.03) possibly_damaging(0.607) TCGA-56-7731-01 4 175183940 175183940 C A FBXO8 Missense_Mutation p.A102S 0.06 deleterious(0.01) possibly_damaging(0.543) TCGA-56-7731-01 4 177143464 177143464 A G ASB5 Silent p.N128N 0.14 TCGA-56-7731-01 4 184431842 184431842 G A ING2 Missense_Mutation p.A194T 0.11 tolerated(0.07) benign(0.194) TCGA-56-7731-01 4 187584498 187584498 T A FAT1 Missense_Mutation p.T1179S 0.14 benign(0.252) TCGA-56-7731-01 4 46252585 46252585 C A GABRA2 Missense_Mutation p.A366S 0.10 tolerated(0.5) benign(0.061) TCGA-56-7731-01 4 48169871 48169871 T A TEC Nonsense_Mutation p.R199* 0.07 TCGA-56-7731-01 4 62598874 62598874 C A LPHN3 Missense_Mutation p.A266E 0.22 deleterious(0) probably_damaging(1) TCGA-56-7731-01 4 62812739 62812739 G T LPHN3 Missense_Mutation p.V775F 0.06 deleterious(0.03) possibly_damaging(0.865) TCGA-56-7731-01 4 65165712 65165712 C T TECRL Missense_Mutation p.V252I 0.10 tolerated(0.58) benign(0.009) TCGA-56-7731-01 4 70351002 70351002 C T UGT2B4 Missense_Mutation p.A412T 0.11 deleterious(0) probably_damaging(0.994) TCGA-56-7731-01 4 8372637 8372637 C T ACOX3 Missense_Mutation p.E661K 0.10 tolerated(0.06) benign(0.153) TCGA-56-7731-01 5 138160478 138160478 A G CTNNA1 Missense_Mutation p.N283S 0.12 deleterious(0.02) benign(0.388) TCGA-56-7731-01 5 140182543 140182543 G T PCDHA3 Silent p.A587A 0.09 TCGA-56-7731-01 5 140203483 140203483 G T PCDHA5 Missense_Mutation p.S708I 0.11 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-56-7731-01 5 140215379 140215379 G T PCDHA7 Missense_Mutation p.G471C 0.11 deleterious_low_confidence(0) probably_damaging(1) TCGA-56-7731-01 5 140562793 140562793 C T PCDHB16 Missense_Mutation p.P220L 0.12 deleterious_low_confidence(0.02) possibly_damaging(0.651) TCGA-56-7731-01 5 140588665 140588665 G T PCDHB12 Silent p.R62R 0.18 TCGA-56-7731-01 5 140730371 140730371 A T PCDHGB1 Missense_Mutation p.S182C 0.15 deleterious(0.03) probably_damaging(0.95) TCGA-56-7731-01 5 140773868 140773868 G T PCDHGA8 Silent p.L496L 0.11 TCGA-56-7731-01 5 141019538 141019538 T C RELL2 Silent p.D185D 0.12 TCGA-56-7731-01 5 150889737 150889737 T C FAT2 Splice_Site p.X3969_splice 0.10 TCGA-56-7731-01 5 15936967 15936967 C A FBXL7 Missense_Mutation p.A383E 0.14 deleterious(0.01) probably_damaging(0.988) TCGA-56-7731-01 5 161292765 161292765 A T GABRA1 Missense_Mutation p.S76C 0.16 deleterious(0) possibly_damaging(0.75) TCGA-56-7731-01 5 173316658 173316658 T A CPEB4 5'UTR 0.09 TCGA-56-7731-01 5 173316664 173316664 G T CPEB4 5'UTR 0.09 TCGA-56-7731-01 5 179143267 179143267 G C CANX Missense_Mutation p.D295H 0.17 deleterious(0.02) probably_damaging(1) TCGA-56-7731-01 5 26881125 26881125 C T CDH9 3'UTR 0.08 TCGA-56-7731-01 5 31526202 31526202 T A DROSHA Missense_Mutation p.S280C 0.08 deleterious_low_confidence(0) possibly_damaging(0.869) TCGA-56-7731-01 5 32403229 32403229 G A ZFR Missense_Mutation p.P500S 0.04 tolerated(0.43) unknown(0) TCGA-56-7731-01 5 35740125 35740125 G A SPEF2 Silent p.V1056V 0.10 TCGA-56-7731-01 5 37816231 37816231 A G GDNF Missense_Mutation p.M70T 0.24 tolerated(0.13) benign(0.006) TCGA-56-7731-01 5 40681455 40681455 C T PTGER4 Silent p.A120A 0.11 TCGA-56-7731-01 5 40852701 40852701 G A CARD6 Missense_Mutation p.A423T 0.14 deleterious(0.01) probably_damaging(0.963) TCGA-56-7731-01 5 41381960 41381960 C A PLCXD3 Silent p.V260V 0.06 TCGA-56-7731-01 5 74722296 74722296 G T COL4A3BP Missense_Mutation p.S247Y 0.07 deleterious(0) probably_damaging(0.993) TCGA-56-7731-01 5 7869262 7869262 G T MTRR Missense_Mutation p.V6L 0.28 tolerated_low_confidence(0.34) benign(0.001) TCGA-56-7731-01 6 110429873 110429873 C T WASF1 Missense_Mutation p.D94N 0.10 deleterious(0.01) unknown(0) TCGA-56-7731-01 6 110530364 110530364 G C CDC40 Missense_Mutation p.D190H 0.14 deleterious(0) possibly_damaging(0.832) TCGA-56-7731-01 6 116982011 116982011 T G ZUFSP Splice_Site p.X187_splice 0.08 TCGA-56-7731-01 6 117609943 117609943 A G ROS1 Silent p.C2252C 0.16 TCGA-56-7731-01 6 118475629 118475629 C A SLC35F1 Silent p.A65A 0.10 TCGA-56-7731-01 6 129498875 129498875 G A LAMA2 Missense_Mutation p.C444Y 0.14 deleterious(0) probably_damaging(1) TCGA-56-7731-01 6 130466536 130466536 G T SAMD3 Silent p.L409L 0.16 TCGA-56-7731-01 6 130761845 130761845 C A TMEM200A Missense_Mutation p.A93D 0.07 tolerated(0.49) benign(0.339) TCGA-56-7731-01 6 130762124 130762124 C A TMEM200A Missense_Mutation p.T186N 0.12 tolerated(0.55) benign(0) TCGA-56-7731-01 6 137476077 137476077 C G IL22RA2 Splice_Site p.X158_splice 0.15 TCGA-56-7731-01 6 159457333 159457333 G T TAGAP Missense_Mutation p.H574Q 0.09 tolerated(0.31) benign(0.014) TCGA-56-7731-01 6 161152873 161152873 G A PLG Missense_Mutation p.R512K 0.09 tolerated(0.53) benign(0.001) TCGA-56-7731-01 6 167570486 167570486 G A GPR31 Silent p.N278N 0.05 TCGA-56-7731-01 6 168273023 168273023 G A MLLT4 Missense_Mutation p.D182N 0.07 deleterious(0.03) benign(0.046) TCGA-56-7731-01 6 169629687 169629687 C G THBS2 Missense_Mutation p.D747H 0.08 deleterious(0) possibly_damaging(0.452) TCGA-56-7731-01 6 32609792 32609792 G T HLA-DQA1 Silent p.L125L 0.09 TCGA-56-7731-01 6 38883153 38883153 T C DNAH8 Silent p.N3163N 0.16 TCGA-56-7731-01 6 38897406 38897406 A T DNAH8 Missense_Mutation p.L3529F 0.07 probably_damaging(1) TCGA-56-7731-01 6 44271994 44271994 T A AARS2 Missense_Mutation p.Q644L 0.12 tolerated(0.13) benign(0.111) TCGA-56-7731-01 6 45459732 45459732 G T RUNX2 Missense_Mutation p.S247I 0.07 deleterious(0.01) probably_damaging(0.972) TCGA-56-7731-01 6 51875213 51875213 C A PKHD1 Missense_Mutation p.C1882F 0.08 deleterious(0) probably_damaging(0.999) TCGA-56-7731-01 6 56463507 56463507 C T DST Missense_Mutation p.E1276K 0.06 possibly_damaging(0.81) TCGA-56-7731-01 6 57398178 57398178 C A PRIM2 Missense_Mutation p.A294D 0.06 deleterious(0.05) possibly_damaging(0.676) TCGA-56-7731-01 6 6196075 6196075 G A F13A1 Silent p.H420H 0.09 TCGA-56-7731-01 6 7404173 7404173 G T RIOK1 Splice_Site p.X256_splice 0.05 TCGA-56-7731-01 6 75892847 75892847 C A COL12A1 Missense_Mutation p.A604S 0.10 probably_damaging(0.998) TCGA-56-7731-01 6 80744832 80744832 G T TTK Missense_Mutation p.S582I 0.10 deleterious(0) possibly_damaging(0.767) TCGA-56-7731-01 6 83849784 83849784 C T DOPEY1 Missense_Mutation p.A1729V 0.05 deleterious(0) benign(0.04) TCGA-56-7731-01 6 84375181 84375181 G T SNAP91 Missense_Mutation p.H84N 0.10 deleterious(0.03) unknown(0) TCGA-56-7731-01 6 99817566 99817566 G A COQ3 Silent p.A340A 0.12 TCGA-56-7731-01 7 100320683 100320683 G T EPO Missense_Mutation p.R170L 0.10 deleterious(0.02) possibly_damaging(0.76) TCGA-56-7731-01 7 102739152 102739152 A G ARMC10 3'UTR 0.09 TCGA-56-7731-01 7 127637842 127637842 C G SND1 Intron 0.03 TCGA-56-7731-01 7 143049029 143049029 G T CLCN1 Nonsense_Mutation p.E980* 0.09 TCGA-56-7731-01 7 143792941 143792941 G A OR2A12 Silent p.V247V 0.08 TCGA-56-7731-01 7 143792942 143792942 G T OR2A12 Missense_Mutation p.G248W 0.08 deleterious(0) probably_damaging(0.95) TCGA-56-7731-01 7 150775665 150775665 G A FASTK Missense_Mutation p.T270M 0.13 deleterious(0.01) benign(0.004) TCGA-56-7731-01 7 47894506 47894506 C A PKD1L1 Missense_Mutation p.R1611S 0.21 deleterious(0.03) benign(0.41) TCGA-56-7731-01 7 47925481 47925481 G T PKD1L1 Nonsense_Mutation p.S1003* 0.17 TCGA-56-7731-01 7 73969799 73969799 G T GTF2IRD1 Missense_Mutation p.E698D 0.11 tolerated(0.47) benign(0.004) TCGA-56-7731-01 7 91708877 91708877 T G AKAP9 Missense_Mutation p.L2477R 0.10 possibly_damaging(0.767) TCGA-56-7731-01 7 92762709 92762709 T A SAMD9L Missense_Mutation p.Y859F 0.06 deleterious(0.02) benign(0.242) TCGA-56-7731-01 8 104897831 104897831 G A RIMS2 Missense_Mutation p.S335N 0.23 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-56-7731-01 8 11412878 11412878 C T BLK Silent p.P219P 0.22 TCGA-56-7731-01 8 132991259 132991259 G A EFR3A Missense_Mutation p.G498R 0.17 tolerated(0.36) benign(0.005) TCGA-56-7731-01 8 139151305 139151305 C G FAM135B Silent p.G1275G 0.15 TCGA-56-7731-01 8 38280549 38280549 C A FGFR1 Intron 0.12 TCGA-56-7731-01 8 59484832 59484832 C A SDCBP Missense_Mutation p.R67S 0.11 tolerated(0.21) benign(0.031) TCGA-56-7731-01 8 61778082 61778082 G C CHD7 Missense_Mutation p.D2862H 0.09 benign(0.259) TCGA-56-7731-01 8 72945941 72945941 G C TRPA1 Missense_Mutation p.L936V 0.07 deleterious(0.04) benign(0.186) TCGA-56-7731-01 8 77766272 77766272 C G ZFHX4 Missense_Mutation p.A2372G 0.21 benign(0.015) TCGA-56-7731-01 8 77767612 77767612 G C ZFHX4 Missense_Mutation p.G2819R 0.15 probably_damaging(0.999) TCGA-56-7731-01 8 88885593 88885593 C A DCAF4L2 Missense_Mutation p.G203C 0.17 deleterious(0) probably_damaging(0.999) TCGA-56-7731-01 9 103340472 103340472 A T MURC Missense_Mutation p.N16I 0.10 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-56-7731-01 9 105768058 105768058 C G CYLC2 3'UTR 0.10 TCGA-56-7731-01 9 125551943 125551943 C T OR5C1 Silent p.T244T 0.10 TCGA-56-7731-01 9 131476588 131476588 A G PKN3 Silent p.K475K 0.09 TCGA-56-7731-01 9 21971111 21971111 G A CDKN2A Missense_Mutation p.H83Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-56-7731-01 9 34971437 34971437 G C KIAA1045 Missense_Mutation p.V48L 0.20 tolerated(0.6) benign(0.047) TCGA-56-7731-01 9 84532997 84532997 T G SPATA31D5P RNA 0.16 TCGA-56-7731-01 9 8485242 8485242 G T PTPRD Silent p.S1046S 0.14 TCGA-56-7731-01 9 92003829 92003829 C A SEMA4D Missense_Mutation p.G303V 0.09 tolerated(0.09) benign(0.059) TCGA-56-7731-01 X 100169301 100169301 C A XKRX 3'UTR 0.08 TCGA-56-7731-01 X 10058865 10058865 G T WWC3 Missense_Mutation p.Q144H 0.10 deleterious(0) probably_damaging(0.999) TCGA-56-7731-01 X 10062220 10062220 G T WWC3 Missense_Mutation p.D186Y 0.09 deleterious(0) possibly_damaging(0.706) TCGA-56-7731-01 X 100629579 100629579 G A BTK Missense_Mutation p.T62I 0.08 deleterious(0.02) benign(0.012) TCGA-56-7731-01 X 101971149 101971149 C A GPRASP2 Missense_Mutation p.S451Y 0.08 deleterious(0) possibly_damaging(0.872) TCGA-56-7731-01 X 10463698 10463698 C A MID1 Nonsense_Mutation p.E264* 0.08 TCGA-56-7731-01 X 106109196 106109196 G A TBC1D8B Nonsense_Mutation p.W865* 0.12 TCGA-56-7731-01 X 106171392 106171392 G A CLDN2 5'UTR 0.15 TCGA-56-7731-01 X 107170207 107170207 G C MID2 Missense_Mutation p.L704F 0.11 deleterious(0) probably_damaging(1) TCGA-56-7731-01 X 107408244 107408244 G T COL4A6 Missense_Mutation p.P1279Q 0.13 possibly_damaging(0.627) TCGA-56-7731-01 X 109696243 109696243 G T RGAG1 Missense_Mutation p.A800S 0.10 tolerated(0.37) benign(0.015) TCGA-56-7731-01 X 110492244 110492244 C A CAPN6 Missense_Mutation p.M400I 0.14 tolerated(1) benign(0.322) TCGA-56-7731-01 X 111697979 111697979 C G ZCCHC16 Nonsense_Mutation p.S8* 0.12 TCGA-56-7731-01 X 114540805 114540805 G T LUZP4 Missense_Mutation p.E126D 0.09 deleterious(0.04) benign(0.182) TCGA-56-7731-01 X 117566743 117566743 G T WDR44 Splice_Site p.X580_splice 0.10 TCGA-56-7731-01 X 118723305 118723305 T C NKRF 3'UTR 0.08 TCGA-56-7731-01 X 123871024 123871024 G A TENM1 Nonsense_Mutation p.Q187* 0.13 TCGA-56-7731-01 X 128703353 128703353 G C OCRL Missense_Mutation p.V527L 0.10 deleterious(0) probably_damaging(0.992) TCGA-56-7731-01 X 12938068 12938068 T A TLR8 Missense_Mutation p.N303K 0.08 tolerated(0.08) benign(0.016) TCGA-56-7731-01 X 130409501 130409501 G T IGSF1 Silent p.T1050T 0.08 TCGA-56-7731-01 X 132352125 132352125 G T TFDP3 Missense_Mutation p.Q55K 0.09 tolerated(0.22) benign(0.292) TCGA-56-7731-01 X 132352126 132352126 G T TFDP3 Missense_Mutation p.D54E 0.09 tolerated(0.29) benign(0.036) TCGA-56-7731-01 X 132458536 132458536 T G GPC4 Silent p.A116A 0.08 TCGA-56-7731-01 X 133700523 133700523 T A PLAC1 Missense_Mutation p.N64Y 0.08 deleterious(0) probably_damaging(0.971) TCGA-56-7731-01 X 134294400 134294400 A G CT55 Silent p.S120S 0.09 TCGA-56-7731-01 X 134494565 134494565 C A ZNF449 Missense_Mutation p.T374K 0.11 deleterious(0.01) possibly_damaging(0.889) TCGA-56-7731-01 X 134992703 134992703 C A SAGE1 Missense_Mutation p.T665N 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-56-7731-01 X 135618282 135618282 G A VGLL1 Missense_Mutation p.G35R 0.11 deleterious(0) probably_damaging(1) TCGA-56-7731-01 X 140994453 140994453 G T MAGEC1 Missense_Mutation p.L421F 0.09 tolerated_low_confidence(0.17) possibly_damaging(0.587) TCGA-56-7731-01 X 142967355 142967355 G T UBE2NL Silent p.G51G 0.11 TCGA-56-7731-01 X 148582562 148582562 G C IDS Missense_Mutation p.S142C 0.08 tolerated(0.06) possibly_damaging(0.648) TCGA-56-7731-01 X 148797812 148797812 A G MAGEA11 Silent p.L222L 0.07 TCGA-56-7731-01 X 14934437 14934437 G A MOSPD2 Silent p.V435V 0.05 TCGA-56-7731-01 X 149814346 149814346 T C MTM1 Splice_Site p.X289_splice 0.08 TCGA-56-7731-01 X 150912280 150912280 G C CNGA2 Missense_Mutation p.K435N 0.10 deleterious(0) probably_damaging(0.999) TCGA-56-7731-01 X 151092349 151092349 C T MAGEA4 Silent p.A71A 0.09 TCGA-56-7731-01 X 151303419 151303419 C A MAGEA10 Missense_Mutation p.G225V 0.19 deleterious(0) probably_damaging(1) TCGA-56-7731-01 X 151900174 151900174 G T MAGEA12 Silent p.I209I 0.05 TCGA-56-7731-01 X 151908812 151908812 T A CSAG1 Silent p.A17A 0.09 TCGA-56-7731-01 X 152159464 152159464 A C PNMA5 Missense_Mutation p.C227G 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-56-7731-01 X 152482027 152482027 T A MAGEA1 3'UTR 0.09 TCGA-56-7731-01 X 152772086 152772086 G T BGN Missense_Mutation p.G222V 0.09 tolerated(0.15) probably_damaging(1) TCGA-56-7731-01 X 153001646 153001646 G T ABCD1 Missense_Mutation p.A388S 0.10 tolerated(0.44) benign(0.145) TCGA-56-7731-01 X 153032468 153032468 C T PLXNB3 Silent p.G85G 0.06 TCGA-56-7731-01 X 153061947 153061947 C A SSR4 Silent p.V42V 0.12 TCGA-56-7731-01 X 153222127 153222127 C T HCFC1 Missense_Mutation p.V862I 0.11 deleterious_low_confidence(0.04) probably_damaging(0.949) TCGA-56-7731-01 X 153357724 153357724 C A MECP2 Intron 0.17 TCGA-56-7731-01 X 153592402 153592402 G T FLNA Missense_Mutation p.N756K 0.06 tolerated(0.98) benign(0.008) TCGA-56-7731-01 X 153631354 153631354 G T DNASE1L1 Missense_Mutation p.R235S 0.10 tolerated(0.31) benign(0.174) TCGA-56-7731-01 X 154493629 154493629 C T RAB39B 5'UTR 0.11 TCGA-56-7731-01 X 15596325 15596325 C A ACE2 Missense_Mutation p.G395V 0.07 deleterious(0) probably_damaging(1) TCGA-56-7731-01 X 16778538 16778538 T G SYAP1 3'UTR 0.08 TCGA-56-7731-01 X 18613521 18613521 G A CDKL5 Silent p.L266L 0.11 TCGA-56-7731-01 X 19398372 19398372 C T MAP3K15 Missense_Mutation p.E819K 0.24 deleterious(0.02) probably_damaging(1) TCGA-56-7731-01 X 22291187 22291187 G T ZNF645 Missense_Mutation p.V27L 0.11 tolerated(0.6) benign(0) TCGA-56-7731-01 X 24762689 24762689 T C POLA1 Intron 0.12 TCGA-56-7731-01 X 32366560 32366560 C G DMD Missense_Mutation p.G1804A 0.08 possibly_damaging(0.899) TCGA-56-7731-01 X 38019421 38019421 T A SRPX Silent p.P268P 0.10 TCGA-56-7731-01 X 41646526 41646526 C A CASK Silent p.R61R 0.07 TCGA-56-7731-01 X 43655095 43655095 C A MAOB Missense_Mutation p.R220L 0.09 deleterious(0.01) benign(0.329) TCGA-56-7731-01 X 46940640 46940640 G T RGN Missense_Mutation p.D33Y 0.09 deleterious(0) probably_damaging(1) TCGA-56-7731-01 X 48682580 48682580 A T HDAC6 Missense_Mutation p.Y1152F 0.12 tolerated(0.45) possibly_damaging(0.635) TCGA-56-7731-01 X 53115021 53115021 G A TSPYL2 Missense_Mutation p.D483N 0.07 tolerated_low_confidence(0.11) benign(0.017) TCGA-56-7731-01 X 54784698 54784698 T A ITIH6 Silent p.T603T 0.12 TCGA-56-7731-01 X 57935521 57935521 G C ZXDA Missense_Mutation p.T445S 0.10 deleterious(0) probably_damaging(0.996) TCGA-56-7731-01 X 65242178 65242178 T A VSIG4 Missense_Mutation p.N376I 0.09 deleterious(0) benign(0.001) TCGA-56-7731-01 X 71932734 71932734 C A PHKA1 Missense_Mutation p.A42S 0.07 deleterious(0.05) probably_damaging(0.922) TCGA-56-7731-01 X 75650238 75650238 G T MAGEE1 Missense_Mutation p.D639Y 0.10 deleterious(0) probably_damaging(0.997) TCGA-56-7731-01 X 76711986 76711986 G T FGF16 Missense_Mutation p.M108I 0.06 benign(0.001) TCGA-56-7731-01 X 77294377 77294377 G T ATP7A Silent p.R1185R 0.07 TCGA-56-7731-01 X 78216646 78216646 C T P2RY10 Missense_Mutation p.P210L 0.10 deleterious(0) probably_damaging(1) TCGA-56-7731-01 X 83352829 83352829 C G RPS6KA6 Missense_Mutation p.A602P 0.07 deleterious(0) probably_damaging(0.995) TCGA-56-7731-01 X 84526013 84526013 G A ZNF711 Missense_Mutation p.G489R 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-56-7731-01 X 91873757 91873757 G T PCDH11X Missense_Mutation p.G1288W 0.08 deleterious_low_confidence(0.02) probably_damaging(0.919) TCGA-56-7731-01 X 96048629 96048629 A T DIAPH2 Intron 0.07 TCGA-56-7822-01 10 102276748 102276748 C A SEC31B 5'UTR 0.32 TCGA-56-7822-01 10 127459032 127459032 G A MMP21 Nonsense_Mutation p.R370* 0.21 TCGA-56-7822-01 10 134218956 134218956 C T PWWP2B Silent p.L318L 0.26 TCGA-56-7822-01 10 18940131 18940131 A G NSUN6 Translation_Start_Site p.M1? 0.21 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-56-7822-01 10 27448580 27448580 G T MASTL Missense_Mutation p.K119N 0.15 deleterious(0) probably_damaging(1) TCGA-56-7822-01 10 27529276 27529276 C G ACBD5 Silent p.V51V 0.18 TCGA-56-7822-01 10 31608201 31608201 C A ZEB1 Missense_Mutation p.A13E 0.15 deleterious(0.02) probably_damaging(0.997) TCGA-56-7822-01 10 50819603 50819603 C T SLC18A3 Missense_Mutation p.R273W 0.17 deleterious(0) probably_damaging(0.993) TCGA-56-7822-01 10 61414206 61414206 G A SLC16A9 Missense_Mutation p.S193F 0.30 tolerated(0.7) benign(0.005) TCGA-56-7822-01 10 61815442 61815442 C G ANK3 Missense_Mutation p.E4347Q 0.27 benign(0.34) TCGA-56-7822-01 10 73472538 73472538 G A C10orf105 3'UTR 0.18 TCGA-56-7822-01 10 73553139 73553139 G T CDH23 5'Flank 0.19 TCGA-56-7822-01 10 77159141 77159141 T C ZNF503 Missense_Mutation p.H436R 0.19 tolerated(0.53) probably_damaging(0.946) TCGA-56-7822-01 10 90427093 90427093 A T LIPF Silent p.V23V 0.22 TCGA-56-7822-01 10 92508659 92508659 G A HTR7 Missense_Mutation p.S411L 0.23 deleterious(0.01) probably_damaging(0.969) TCGA-56-7822-01 10 95518547 95518547 C T LGI1 Silent p.I82I 0.12 TCGA-56-7822-01 10 97918137 97918137 G A ZNF518A RNA 0.19 TCGA-56-7822-01 11 1018716 1018716 G - MUC6 Frame_Shift_Del p.P1362Hfs*94 0.23 TCGA-56-7822-01 11 1020182 1020182 G T MUC6 Nonsense_Mutation p.S1239* 0.20 TCGA-56-7822-01 11 111709078 111709078 T C ALG9 Silent p.Q235Q 0.11 TCGA-56-7822-01 11 117257918 117257918 G T CEP164 Splice_Site p.X575_splice 0.17 TCGA-56-7822-01 11 120352237 120352237 G A ARHGEF12 Silent p.Q1502Q 0.11 TCGA-56-7822-01 11 123810679 123810679 C A OR4D5 Missense_Mutation p.A119E 0.18 deleterious(0) possibly_damaging(0.63) TCGA-56-7822-01 11 124135202 124135202 C A OR8G5 Silent p.A160A 0.09 TCGA-56-7822-01 11 124763858 124763858 G T ROBO4 Missense_Mutation p.P468T 0.40 deleterious(0) probably_damaging(0.999) TCGA-56-7822-01 11 18610243 18610243 C G UEVLD 5'Flank 0.22 TCGA-56-7822-01 11 26682067 26682067 C A ANO3 3'UTR 0.33 TCGA-56-7822-01 11 30032619 30032619 C G KCNA4 Missense_Mutation p.G536A 0.30 tolerated(0.07) probably_damaging(0.989) TCGA-56-7822-01 11 34073967 34073967 G A CAPRIN1 Splice_Site p.X1_splice 0.10 TCGA-56-7822-01 11 47296237 47296237 G A MADD Silent p.L62L 0.10 TCGA-56-7822-01 11 49179545 49179545 C A FOLH1 Missense_Mutation p.W497C 0.20 deleterious(0.01) possibly_damaging(0.635) TCGA-56-7822-01 11 49179546 49179546 C A FOLH1 Missense_Mutation p.W497L 0.19 deleterious(0) probably_damaging(0.971) TCGA-56-7822-01 11 49805410 49805410 G A RP11-707M1.1 RNA 0.14 TCGA-56-7822-01 11 5173527 5173527 C G OR52A1 Missense_Mutation p.V25L 0.27 tolerated(0.19) benign(0.007) TCGA-56-7822-01 11 55032778 55032778 T C TRIM48 Silent p.A149A 0.13 TCGA-56-7822-01 11 55065465 55065465 C A TRIM51HP RNA 0.44 TCGA-56-7822-01 11 55065466 55065466 C T TRIM51HP RNA 0.42 TCGA-56-7822-01 11 55135358 55135358 A T OR4A15 5'Flank 0.08 TCGA-56-7822-01 11 55658617 55658617 A T TRIM51 Missense_Mutation p.T290S 0.11 tolerated(0.88) benign(0.178) TCGA-56-7822-01 11 558197 558197 G C C11orf35 Missense_Mutation p.I121M 0.07 deleterious(0.03) benign(0.003) TCGA-56-7822-01 11 58126065 58126065 C T OR5B17 Missense_Mutation p.D160N 0.10 tolerated_low_confidence(0.5) benign(0.092) TCGA-56-7822-01 11 58607112 58607112 C A GLYATL2 5'UTR 0.16 TCGA-56-7822-01 11 58723091 58723091 C T GLYATL1 Missense_Mutation p.P198L 0.31 tolerated(0.32) benign(0.002) TCGA-56-7822-01 11 58978890 58978890 G C MPEG1 Missense_Mutation p.F483L 0.15 deleterious(0.01) benign(0.345) TCGA-56-7822-01 11 59417002 59417002 C A PATL1 Missense_Mutation p.D556Y 0.12 deleterious(0) possibly_damaging(0.821) TCGA-56-7822-01 11 6129460 6129460 C A OR56B4 Missense_Mutation p.T151K 0.36 deleterious(0.04) possibly_damaging(0.9) TCGA-56-7822-01 11 62299207 62299207 G A AHNAK Silent p.G894G 0.40 TCGA-56-7822-01 11 63278562 63278562 G A LGALS12 Silent p.L204L 0.17 TCGA-56-7822-01 11 72412704 72412704 C A ARAP1 Silent p.R764R 0.10 TCGA-56-7822-01 11 7817575 7817575 T C OR5P2 Missense_Mutation p.I305M 0.10 tolerated_low_confidence(0.11) benign(0.017) TCGA-56-7822-01 11 85468888 85468888 C G SYTL2 5'UTR 0.35 TCGA-56-7822-01 11 88300354 88300354 C G GRM5 Missense_Mutation p.V833L 0.36 deleterious(0.01) probably_damaging(0.994) TCGA-56-7822-01 12 102158693 102158693 C T GNPTAB Missense_Mutation p.D668N 0.10 deleterious(0.01) possibly_damaging(0.753) TCGA-56-7822-01 12 106740400 106740400 C T TCP11L2 3'UTR 0.33 TCGA-56-7822-01 12 121746378 121746378 C A ANAPC5 Missense_Mutation p.G725W 0.12 deleterious(0) probably_damaging(1) TCGA-56-7822-01 12 121947402 121947402 C T KDM2B Missense_Mutation p.E539K 0.22 tolerated(0.1) benign(0.253) TCGA-56-7822-01 12 125455913 125455913 C A DHX37 Nonsense_Mutation p.E376* 0.16 TCGA-56-7822-01 12 132393284 132393284 G A ULK1 Missense_Mutation p.D138N 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-56-7822-01 12 15095494 15095494 C G ARHGDIB Missense_Mutation p.E190Q 0.17 deleterious(0.02) possibly_damaging(0.746) TCGA-56-7822-01 12 1895284 1895284 G T ADIPOR2 3'UTR 0.36 TCGA-56-7822-01 12 21375252 21375252 G A SLCO1B1 Silent p.L567L 0.09 TCGA-56-7822-01 12 26868318 26868318 C G ITPR2 Missense_Mutation p.E257Q 0.20 tolerated(0.07) benign(0.005) TCGA-56-7822-01 12 2930016 2930016 G A ITFG2 Missense_Mutation p.E225K 0.12 tolerated(0.22) benign(0.005) TCGA-56-7822-01 12 29510597 29510597 A G ERGIC2 Silent p.F145F 0.19 TCGA-56-7822-01 12 475158 475158 G A KDM5A Missense_Mutation p.S160L 0.08 deleterious(0.02) benign(0.035) TCGA-56-7822-01 12 49666129 49666129 C T TUBA1C Missense_Mutation p.L157F 0.16 deleterious_low_confidence(0) possibly_damaging(0.672) TCGA-56-7822-01 12 52312836 52312836 G C ACVRL1 Missense_Mutation p.M438I 0.07 deleterious(0.02) probably_damaging(0.998) TCGA-56-7822-01 12 53679769 53679769 G T ESPL1 Missense_Mutation p.K1083N 0.24 deleterious(0.01) benign(0.197) TCGA-56-7822-01 12 57828931 57828931 C G INHBC Missense_Mutation p.L88V 0.11 tolerated(0.59) benign(0.079) TCGA-56-7822-01 12 57969492 57969492 G C KIF5A Missense_Mutation p.E659Q 0.22 deleterious(0.01) possibly_damaging(0.756) TCGA-56-7822-01 12 6697005 6697005 C G CHD4 Missense_Mutation p.M1192I 0.17 deleterious(0) benign(0) TCGA-56-7822-01 12 6943117 6943117 G A LEPREL2 Silent p.L453L 0.24 TCGA-56-7822-01 12 70087673 70087673 G C BEST3 Missense_Mutation p.L88V 0.21 deleterious(0) possibly_damaging(0.579) TCGA-56-7822-01 12 72969289 72969289 C A TRHDE Missense_Mutation p.A718E 0.23 deleterious(0.01) probably_damaging(0.979) TCGA-56-7822-01 12 7510023 7510023 G A CD163L1 Missense_Mutation p.P1447S 0.44 tolerated(0.38) benign(0.201) TCGA-56-7822-01 12 78598727 78598727 C T NAV3 Missense_Mutation p.R2261C 0.22 deleterious(0) probably_damaging(0.999) TCGA-56-7822-01 12 80771768 80771768 T C OTOGL Silent p.N2325N 0.45 TCGA-56-7822-01 12 85438543 85438543 G T LRRIQ1 Nonsense_Mutation p.G98* 0.07 TCGA-56-7822-01 12 85438544 85438544 G T LRRIQ1 Missense_Mutation p.G98V 0.07 deleterious(0.03) possibly_damaging(0.642) TCGA-56-7822-01 12 8689760 8689760 C A CLEC4E Missense_Mutation p.C108F 0.11 deleterious(0) probably_damaging(0.995) TCGA-56-7822-01 12 89917073 89917073 C A GALNT4 Silent p.R418R 0.24 TCGA-56-7822-01 12 91347982 91347982 C G CCER1 Missense_Mutation p.E180Q 0.31 deleterious(0) benign(0.135) TCGA-56-7822-01 12 9161644 9161644 A T KLRG1 Missense_Mutation p.E144V 0.38 deleterious(0) possibly_damaging(0.829) TCGA-56-7822-01 13 101717773 101717773 G A NALCN Silent p.T1529T 0.40 TCGA-56-7822-01 13 101717774 101717774 G T NALCN Missense_Mutation p.T1529N 0.39 deleterious(0) probably_damaging(0.937) TCGA-56-7822-01 13 103701787 103701787 C A SLC10A2 Silent p.T257T 0.37 TCGA-56-7822-01 13 113510223 113510223 A G ATP11A Splice_Site p.X748_splice 0.43 TCGA-56-7822-01 13 23853585 23853585 T C SGCG Missense_Mutation p.V158A 0.39 tolerated(0.1) benign(0.042) TCGA-56-7822-01 13 45148498 45148498 C G TSC22D1 Missense_Mutation p.M571I 0.43 tolerated(0.93) benign(0) TCGA-56-7822-01 13 53420482 53420482 C T PCDH8 Missense_Mutation p.R697H 0.44 deleterious(0.02) benign(0.008) TCGA-56-7822-01 13 67800324 67800324 C A PCDH9 Missense_Mutation p.R750L 0.27 deleterious(0) probably_damaging(0.933) TCGA-56-7822-01 13 72440776 72440776 G C DACH1 Missense_Mutation p.I44M 0.15 unknown(0) TCGA-56-7822-01 13 95131270 95131270 C G DCT Missense_Mutation p.Q80H 0.41 deleterious(0.02) benign(0.372) TCGA-56-7822-01 13 98654807 98654807 G C IPO5 Missense_Mutation p.E417Q 0.09 tolerated(1) benign(0.219) TCGA-56-7822-01 14 45468641 45468641 C T FAM179B Missense_Mutation p.T760I 0.27 deleterious(0) possibly_damaging(0.462) TCGA-56-7822-01 14 45644877 45644877 G C FANCM Missense_Mutation p.D974H 0.51 deleterious(0.01) possibly_damaging(0.711) TCGA-56-7822-01 14 50101264 50101264 G T DNAAF2 Missense_Mutation p.R202S 0.31 deleterious(0) probably_damaging(0.999) TCGA-56-7822-01 14 51224256 51224256 C A NIN Missense_Mutation p.Q1164H 0.20 deleterious(0.03) possibly_damaging(0.724) TCGA-56-7822-01 14 53540492 53540492 C A DDHD1 Missense_Mutation p.V455F 0.25 deleterious(0) probably_damaging(0.997) TCGA-56-7822-01 14 74970639 74970639 C A LTBP2 Missense_Mutation p.K1524N 0.49 tolerated(0.54) benign(0.077) TCGA-56-7822-01 14 92601784 92601784 C G CPSF2 Silent p.V163V 0.17 TCGA-56-7822-01 14 94170982 94170982 G A UNC79 Missense_Mutation p.M2382I 0.07 deleterious(0.04) probably_damaging(0.974) TCGA-56-7822-01 14 96730538 96730538 C A BDKRB1 Missense_Mutation p.F173L 0.41 tolerated(0.09) possibly_damaging(0.863) TCGA-56-7822-01 15 23811495 23811495 G T MKRN3 Missense_Mutation p.R189L 0.21 tolerated(0.8) benign(0) TCGA-56-7822-01 15 24921090 24921090 G A NPAP1 Missense_Mutation p.A26T 0.46 tolerated_low_confidence(0.63) benign(0.001) TCGA-56-7822-01 15 25223637 25223637 T C SNRPN 3'UTR 0.24 TCGA-56-7822-01 15 25620662 25620662 G C UBE3A Missense_Mutation p.S107C 0.09 deleterious(0) benign(0.007) TCGA-56-7822-01 15 37109970 37109970 G A CSNK1A1P1 RNA 0.10 TCGA-56-7822-01 15 37110001 37110001 T C CSNK1A1P1 RNA 0.16 TCGA-56-7822-01 15 40917695 40917695 G C CASC5 Missense_Mutation p.E1771Q 0.28 deleterious(0.02) benign(0.014) TCGA-56-7822-01 15 44951359 44951359 C A SPG11 Missense_Mutation p.L195F 0.14 deleterious(0) probably_damaging(0.951) TCGA-56-7822-01 15 72580780 72580780 C T CELF6 Missense_Mutation p.C396Y 0.29 deleterious(0) benign(0.088) TCGA-56-7822-01 15 89442898 89442898 C T MFGE8 Missense_Mutation p.G339S 0.24 tolerated(0.73) benign(0.022) TCGA-56-7822-01 16 18841063 18841063 C A SMG1 Nonsense_Mutation p.E3050* 0.23 TCGA-56-7822-01 16 19483454 19483454 C T TMC5 Silent p.F609F 0.22 TCGA-56-7822-01 16 2333195 2333195 G A ABCA3 Missense_Mutation p.R1343W 0.09 tolerated(0.21) benign(0) TCGA-56-7822-01 16 24873930 24873930 G A SLC5A11 Silent p.V48V 0.25 TCGA-56-7822-01 16 30664299 30664299 C T PRR14 Silent p.L127L 0.20 TCGA-56-7822-01 16 30764844 30764844 C T PHKG2 Silent p.F174F 0.12 TCGA-56-7822-01 16 31089683 31089683 G A ZNF646 Missense_Mutation p.G680S 0.16 tolerated(0.76) benign(0.002) TCGA-56-7822-01 16 53504316 53504316 G T RBL2 Missense_Mutation p.G756V 0.15 tolerated(0.06) possibly_damaging(0.854) TCGA-56-7822-01 16 66413358 66413358 C T CDH5 Missense_Mutation p.P40S 0.24 tolerated(0.55) benign(0.007) TCGA-56-7822-01 16 67000170 67000170 C T CES3 Silent p.C281C 0.10 TCGA-56-7822-01 16 74990490 74990490 G A WDR59 Silent p.I41I 0.19 TCGA-56-7822-01 16 78466480 78466480 C T WWOX Missense_Mutation p.S296F 0.08 deleterious(0) probably_damaging(0.98) TCGA-56-7822-01 16 81077201 81077201 A G ATMIN Silent p.L366L 0.09 TCGA-56-7822-01 16 84125337 84125337 C A MBTPS1 Missense_Mutation p.K321N 0.16 deleterious(0) probably_damaging(1) TCGA-56-7822-01 16 85120319 85120319 C T KIAA0513 Silent p.F360F 0.33 TCGA-56-7822-01 16 89346113 89346113 C T ANKRD11 Silent p.V2279V 0.35 TCGA-56-7822-01 16 89348329 89348329 C T ANKRD11 Missense_Mutation p.E1541K 0.22 benign(0.427) TCGA-56-7822-01 16 89348333 89348333 C G ANKRD11 Missense_Mutation p.E1539D 0.22 benign(0.007) TCGA-56-7822-01 16 89348620 89348620 C T ANKRD11 Missense_Mutation p.E1444K 0.23 probably_damaging(0.917) TCGA-56-7822-01 16 89351491 89351491 C G ANKRD11 Missense_Mutation p.E487Q 0.28 benign(0.076) TCGA-56-7822-01 16 89351500 89351500 C T ANKRD11 Missense_Mutation p.E484K 0.28 possibly_damaging(0.905) TCGA-56-7822-01 16 89351556 89351556 C G ANKRD11 Missense_Mutation p.R465T 0.29 benign(0.025) TCGA-56-7822-01 16 89351606 89351606 C T ANKRD11 Silent p.Q448Q 0.34 TCGA-56-7822-01 17 15620601 15620601 C T ZNF286A Silent p.P521P 0.20 TCGA-56-7822-01 17 26105770 26105770 G C NOS2 Silent p.L409L 0.28 TCGA-56-7822-01 17 28004691 28004691 C A SSH2 Missense_Mutation p.G156V 0.10 deleterious(0) probably_damaging(0.997) TCGA-56-7822-01 17 29562965 29562965 C A NF1 Silent p.L1300L 0.09 TCGA-56-7822-01 17 36522209 36522209 C - SOCS7 Frame_Shift_Del p.L368Cfs*38 0.27 TCGA-56-7822-01 17 37006530 37006530 C G RPL23 Intron 0.22 TCGA-56-7822-01 17 40140777 40140777 G A DNAJC7 Silent p.Y297Y 0.32 TCGA-56-7822-01 17 42744444 42744444 C G C17orf104 Missense_Mutation p.Q389E 0.20 tolerated(0.1) probably_damaging(0.994) TCGA-56-7822-01 17 4575939 4575939 C T PELP1 Missense_Mutation p.D783N 0.48 possibly_damaging(0.539) TCGA-56-7822-01 17 46214602 46214602 C T SKAP1 Missense_Mutation p.R359K 0.17 tolerated_low_confidence(0.08) benign(0.401) TCGA-56-7822-01 17 4876520 4876520 C G CAMTA2 Missense_Mutation p.E767Q 0.42 deleterious(0) probably_damaging(0.995) TCGA-56-7822-01 17 5359364 5359364 A C DHX33 Missense_Mutation p.S330A 0.26 tolerated(1) possibly_damaging(0.454) TCGA-56-7822-01 17 57043135 57043135 C A PPM1E Missense_Mutation p.L222I 0.24 deleterious(0.03) possibly_damaging(0.653) TCGA-56-7822-01 17 57058387 57058387 G C PPM1E Missense_Mutation p.E755Q 0.39 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-56-7822-01 17 61895694 61895694 A G DDX42 Missense_Mutation p.K918R 0.11 tolerated_low_confidence(0.44) benign(0.001) TCGA-56-7822-01 17 63554319 63554319 C T AXIN2 Silent p.E140E 0.27 TCGA-56-7822-01 17 72537833 72537833 C A CD300C Missense_Mutation p.L190F 0.19 deleterious(0) probably_damaging(0.998) TCGA-56-7822-01 17 7578460 7578460 A T TP53 Missense_Mutation p.V157D 0.31 deleterious(0) probably_damaging(1) TCGA-56-7822-01 17 77770066 77770066 G C CBX8 Silent p.L54L 0.08 TCGA-56-7822-01 18 14479151 14479151 A T CXADRP3 RNA 0.17 TCGA-56-7822-01 18 28906860 28906860 T C DSG1 Silent p.N36N 0.23 TCGA-56-7822-01 18 58038692 58038692 G A MC4R Silent p.I297I 0.30 TCGA-56-7822-01 18 67563119 67563119 A C CD226 Missense_Mutation p.V182G 0.26 deleterious(0.02) benign(0.048) TCGA-56-7822-01 18 9950485 9950485 G T VAPA Nonsense_Mutation p.E216* 0.10 TCGA-56-7822-01 19 14854440 14854440 G A EMR2 Silent p.L780L 0.25 TCGA-56-7822-01 19 17449208 17449208 G T GTPBP3 Missense_Mutation p.E112D 0.43 deleterious(0) probably_damaging(1) TCGA-56-7822-01 19 17999174 17999174 G C SLC5A5 Missense_Mutation p.D521H 0.25 deleterious(0.04) benign(0.008) TCGA-56-7822-01 19 17999260 17999260 G C SLC5A5 Silent p.L549L 0.27 TCGA-56-7822-01 19 18380308 18380308 G C KIAA1683 5'UTR 0.35 TCGA-56-7822-01 19 19790774 19790774 C T ZNF101 Nonsense_Mutation p.Q326* 0.35 TCGA-56-7822-01 19 35523570 35523570 G T SCN1B Missense_Mutation p.R60L 0.07 deleterious(0) possibly_damaging(0.885) TCGA-56-7822-01 19 37880312 37880312 G T ZNF527 Missense_Mutation p.R454L 0.29 tolerated(0.33) possibly_damaging(0.832) TCGA-56-7822-01 19 38103430 38103430 G C ZNF540 Missense_Mutation p.E417Q 0.13 deleterious(0.03) benign(0.369) TCGA-56-7822-01 19 38160622 38160622 T A ZNF781 Missense_Mutation p.D143V 0.27 tolerated(0.09) benign(0.033) TCGA-56-7822-01 19 4180867 4180867 C T SIRT6 Missense_Mutation p.E36K 0.23 tolerated(0.19) benign(0.004) TCGA-56-7822-01 19 44418533 44418533 C G ZNF45 Missense_Mutation p.R352T 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-56-7822-01 19 51532393 51532396 TCAC AA KLK12 3'Flank 0.17 TCGA-56-7822-01 19 51628405 51628405 T C SIGLEC9 Silent p.H58H 0.13 TCGA-56-7822-01 19 54313326 54313326 G C NLRP12 Missense_Mutation p.D529E 0.10 tolerated(1) benign(0.011) TCGA-56-7822-01 19 54313634 54313634 T A NLRP12 Missense_Mutation p.T427S 0.26 tolerated(0.08) benign(0.114) TCGA-56-7822-01 19 54313635 54313635 C A NLRP12 Missense_Mutation p.Q426H 0.26 tolerated(0.06) benign(0.015) TCGA-56-7822-01 19 55086045 55086045 G A LILRA2 Silent p.V116V 0.17 TCGA-56-7822-01 19 55112290 55112290 C A LILRA1 3'UTR 0.25 TCGA-56-7822-01 19 56243815 56243815 C G NLRP9 Missense_Mutation p.R461P 0.09 tolerated(0.13) possibly_damaging(0.693) TCGA-56-7822-01 19 56370181 56370181 C A NLRP4 Missense_Mutation p.H474Q 0.14 tolerated(0.15) benign(0.165) TCGA-56-7822-01 19 57286084 57286084 T A ZIM2 Missense_Mutation p.E519V 0.36 deleterious(0) possibly_damaging(0.731) TCGA-56-7822-01 19 58004282 58004282 G T ZNF419 Silent p.L120L 0.18 TCGA-56-7822-01 19 58370320 58370320 G A ZNF587 Silent p.L180L 0.23 TCGA-56-7822-01 19 6897177 6897177 C G EMR1 Missense_Mutation p.Q86E 0.27 tolerated(0.24) benign(0.013) TCGA-56-7822-01 1 110149054 110149054 G A GNAT2 Silent p.L156L 0.27 TCGA-56-7822-01 1 111216498 111216498 C T KCNA3 Missense_Mutation p.V312M 0.35 tolerated(0.08) possibly_damaging(0.888) TCGA-56-7822-01 1 111663295 111663295 T C DRAM2 Silent p.A120A 0.32 TCGA-56-7822-01 1 11174458 11174458 A G MTOR Missense_Mutation p.V2406A 0.29 deleterious(0) benign(0.266) TCGA-56-7822-01 1 11259397 11259397 G A MTOR Nonsense_Mutation p.R1391* 0.11 TCGA-56-7822-01 1 115167950 115167950 T C DENND2C Missense_Mutation p.Y219C 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-56-7822-01 1 11740616 11740616 T C MAD2L2 Intron 0.40 TCGA-56-7822-01 1 117554259 117554259 C A CD101 Missense_Mutation p.S171Y 0.33 deleterious(0) possibly_damaging(0.794) TCGA-56-7822-01 1 14059378 14059378 G C PRDM2 Splice_Site p.X77_splice 0.42 TCGA-56-7822-01 1 155582989 155582989 G A MSTO1 Silent p.V416V 0.11 TCGA-56-7822-01 1 160128882 160128884 CGA - ATP1A4 In_Frame_Del p.R206del 0.12 TCGA-56-7822-01 1 161722209 161722209 C T DUSP12 Missense_Mutation p.S210L 0.11 tolerated(0.1) benign(0.001) TCGA-56-7822-01 1 170508677 170508677 G C GORAB Missense_Mutation p.D155H 0.10 deleterious(0.02) probably_damaging(0.922) TCGA-56-7822-01 1 171080077 171080077 T C FMO3 Missense_Mutation p.Y256H 0.17 tolerated(0.4) possibly_damaging(0.641) TCGA-56-7822-01 1 174418134 174418134 T C GPR52 Silent p.N295N 0.10 TCGA-56-7822-01 1 192335149 192335149 C A RGS21 Silent p.L118L 0.26 TCGA-56-7822-01 1 192335150 192335150 A T RGS21 Missense_Mutation p.M119L 0.24 deleterious(0.03) probably_damaging(0.975) TCGA-56-7822-01 1 196946821 196946821 A T CFHR5 Silent p.L9L 0.27 TCGA-56-7822-01 1 206241533 206241533 G A C1orf186 Missense_Mutation p.H86Y 0.10 deleterious(0.02) possibly_damaging(0.579) TCGA-56-7822-01 1 207782713 207782713 C T CR1 Missense_Mutation p.T1992M 0.10 tolerated(0.23) probably_damaging(0.998) TCGA-56-7822-01 1 207867865 207867865 G C CR1L Missense_Mutation p.D211H 0.26 deleterious(0.01) probably_damaging(0.937) TCGA-56-7822-01 1 210796934 210796934 C T HHAT Missense_Mutation p.S438L 0.10 tolerated(0.32) benign(0.388) TCGA-56-7822-01 1 211542904 211542904 C T TRAF5 Silent p.G300G 0.26 TCGA-56-7822-01 1 215914807 215914807 A G USH2A Missense_Mutation p.V3874A 0.30 benign(0.001) TCGA-56-7822-01 1 228612711 228612711 C G HIST3H3 Missense_Mutation p.E106Q 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-56-7822-01 1 236973854 236973854 C T MTR Missense_Mutation p.S154F 0.25 deleterious(0) probably_damaging(1) TCGA-56-7822-01 1 248308610 248308610 A T OR2M5 Missense_Mutation p.Q54L 0.29 deleterious(0.04) possibly_damaging(0.461) TCGA-56-7822-01 1 248457944 248457944 G C OR2T12 Missense_Mutation p.Q313E 0.11 tolerated(0.88) benign(0.006) TCGA-56-7822-01 1 249119065 249119065 C A SH3BP5L Nonsense_Mutation p.E24* 0.16 TCGA-56-7822-01 20 22563391 22563391 G C FOXA2 Missense_Mutation p.H163Q 0.28 deleterious(0) probably_damaging(1) TCGA-56-7822-01 20 23016573 23016573 T A SSTR4 Silent p.P151P 0.14 TCGA-56-7822-01 20 23965960 23965960 G C GGTLC1 Missense_Mutation p.Q191E 0.16 tolerated(1) benign(0.001) TCGA-56-7822-01 20 2845908 2845908 G T VPS16 Missense_Mutation p.G707C 0.22 deleterious(0) probably_damaging(0.999) TCGA-56-7822-01 20 35128764 35128764 G C DLGAP4 Missense_Mutation p.K751N 0.22 tolerated(0.39) benign(0.421) TCGA-56-7822-01 20 35646697 35646697 C G RBL1 Missense_Mutation p.E903Q 0.20 tolerated(0.22) benign(0.031) TCGA-56-7822-01 20 37005337 37005337 T G LBP 3'UTR 0.20 TCGA-56-7822-01 20 3726569 3726569 G C HSPA12B Missense_Mutation p.R189T 0.14 tolerated(0.18) benign(0.003) TCGA-56-7822-01 20 39991404 39991404 G C EMILIN3 Missense_Mutation p.L269V 0.18 deleterious(0) probably_damaging(0.997) TCGA-56-7822-01 20 47991416 47991416 G C KCNB1 Silent p.P227P 0.28 TCGA-56-7822-01 20 55033506 55033506 C T CASS4 Silent p.S688S 0.21 TCGA-56-7822-01 20 56093896 56093896 C A CTCFL Missense_Mutation p.G326V 0.24 deleterious(0) probably_damaging(1) TCGA-56-7822-01 20 57768497 57768497 G A ZNF831 Nonsense_Mutation p.W808* 0.14 TCGA-56-7822-01 20 57768498 57768498 G T ZNF831 Missense_Mutation p.W808C 0.15 deleterious(0.02) benign(0.339) TCGA-56-7822-01 20 58318186 58318186 C A PHACTR3 Missense_Mutation p.A48E 0.25 deleterious(0) possibly_damaging(0.662) TCGA-56-7822-01 20 61958160 61958160 G A COL20A1 Silent p.G1171G 0.40 TCGA-56-7822-01 21 11029691 11029691 C G BAGE2 RNA 0.07 TCGA-56-7822-01 21 15746571 15746571 C G HSPA13 Missense_Mutation p.Q261H 0.16 tolerated(0.1) probably_damaging(0.999) TCGA-56-7822-01 21 41416027 41416027 G T DSCAM Missense_Mutation p.S1787R 0.23 deleterious(0) probably_damaging(1) TCGA-56-7822-01 21 43240038 43240038 G A PRDM15 Silent p.C1086C 0.21 TCGA-56-7822-01 21 43496175 43496175 G A UMODL1 Silent p.Q46Q 0.11 TCGA-56-7822-01 21 45523432 45523432 C T TRAPPC10 3'UTR 0.21 TCGA-56-7822-01 21 47410914 47410914 C G COL6A1 Missense_Mutation p.P360A 0.10 tolerated(0.08) unknown(0) TCGA-56-7822-01 21 47842000 47842000 G A PCNT Missense_Mutation p.A2381T 0.23 possibly_damaging(0.811) TCGA-56-7822-01 21 48083314 48083314 A T PRMT2 Missense_Mutation p.T373S 0.11 deleterious(0.04) possibly_damaging(0.621) TCGA-56-7822-01 22 17117980 17117980 G C TPTEP1 Intron 0.14 TCGA-56-7822-01 22 24379496 24379496 G A GSTT1 Silent p.L72L 0.33 TCGA-56-7822-01 22 36597827 36597827 C G APOL4 Intron 0.23 TCGA-56-7822-01 22 37603039 37603039 G C SSTR3 Silent p.L268L 0.19 TCGA-56-7822-01 22 38019556 38019556 C T GGA1 Intron 0.19 TCGA-56-7822-01 22 38340211 38340211 C A C22orf23 Nonsense_Mutation p.E209* 0.13 TCGA-56-7822-01 22 41252485 41252485 C G ST13 Silent p.P20P 0.17 TCGA-56-7822-01 22 45795220 45795220 G T SMC1B Missense_Mutation p.L290I 0.31 tolerated(0.27) benign(0.012) TCGA-56-7822-01 22 45961041 45961041 A T FBLN1 Intron 0.34 TCGA-56-7822-01 22 51018166 51018166 C G CHKB Missense_Mutation p.E341Q 0.21 deleterious(0) probably_damaging(0.998) TCGA-56-7822-01 2 160257112 160257112 C G BAZ2B Missense_Mutation p.E966Q 0.43 possibly_damaging(0.764) TCGA-56-7822-01 2 161349887 161349887 G C RBMS1 5'UTR 0.20 TCGA-56-7822-01 2 170101407 170101407 G A LRP2 Missense_Mutation p.H1076Y 0.24 possibly_damaging(0.516) TCGA-56-7822-01 2 179598513 179598513 C T TTN Nonsense_Mutation p.W5201* 0.22 TCGA-56-7822-01 2 211504743 211504743 C T CPS1 Silent p.D979D 0.09 TCGA-56-7822-01 2 211532979 211532979 C T CPS1 Missense_Mutation p.P1364S 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-56-7822-01 2 219869066 219869066 C G CCDC108 Missense_Mutation p.Q1721H 0.24 tolerated(0.1) benign(0.015) TCGA-56-7822-01 2 220290697 220290697 G T DES Missense_Mutation p.Q466H 0.21 tolerated(1) benign(0.003) TCGA-56-7822-01 2 220370984 220370984 G T GMPPA Silent p.T334T 0.42 TCGA-56-7822-01 2 220396523 220396523 C T ASIC4 Missense_Mutation p.P336L 0.13 tolerated(0.15) benign(0.002) TCGA-56-7822-01 2 228131157 228131157 C A COL4A3 Missense_Mutation p.P447Q 0.38 probably_damaging(0.998) TCGA-56-7822-01 2 231328817 231328817 G T SP100 Nonsense_Mutation p.E365* 0.43 TCGA-56-7822-01 2 232458440 232458440 G T C2orf57 Missense_Mutation p.D260Y 0.41 deleterious(0) probably_damaging(0.979) TCGA-56-7822-01 2 234601885 234601885 C G UGT1A6 Missense_Mutation p.P79A 0.22 tolerated(0.13) benign(0.032) TCGA-56-7822-01 2 236945296 236945296 G A AGAP1 Nonsense_Mutation p.W579* 0.54 TCGA-56-7822-01 2 237032646 237032646 C T AGAP1 Silent p.I818I 0.14 TCGA-56-7822-01 2 30143341 30143341 G A ALK Missense_Mutation p.S62L 0.31 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-56-7822-01 2 56149546 56149546 C G EFEMP1 Silent p.L10L 0.21 TCGA-56-7822-01 2 61472368 61472368 C G USP34 Missense_Mutation p.E2202Q 0.23 deleterious(0) probably_damaging(1) TCGA-56-7822-01 2 71791254 71791254 C T DYSF Missense_Mutation p.R826W 0.19 deleterious(0) probably_damaging(1) TCGA-56-7822-01 2 73828561 73828561 C G ALMS1 Missense_Mutation p.Q4037E 0.17 probably_damaging(0.997) TCGA-56-7822-01 2 74733102 74733102 C G PCGF1 Missense_Mutation p.L169F 0.26 deleterious(0) benign(0.289) TCGA-56-7822-01 2 84775433 84775433 G T DNAH6 Missense_Mutation p.S403I 0.47 tolerated(0.25) benign(0.001) TCGA-56-7822-01 2 85770044 85770044 T G MAT2A Silent p.V324V 0.48 TCGA-56-7822-01 2 89384840 89384840 G A IGKV3-15 Missense_Mutation p.P60S 0.40 tolerated(0.1) possibly_damaging(0.861) TCGA-56-7822-01 2 98844748 98844748 C A VWA3B Silent p.S701S 0.33 TCGA-56-7822-01 3 111886123 111886123 C G SLC9C1 Missense_Mutation p.R1103S 0.17 tolerated(0.27) benign(0.001) TCGA-56-7822-01 3 112991265 112991265 G A BOC Missense_Mutation p.A226T 0.17 tolerated(0.12) possibly_damaging(0.558) TCGA-56-7822-01 3 113795753 113795753 C T QTRTD1 Missense_Mutation p.S249L 0.17 tolerated(0.13) benign(0.138) TCGA-56-7822-01 3 119379083 119379083 C A POPDC2 Missense_Mutation p.C63F 0.19 deleterious(0) probably_damaging(0.996) TCGA-56-7822-01 3 122289459 122289459 C T DTX3L Missense_Mutation p.S698L 0.15 deleterious(0) benign(0.068) TCGA-56-7822-01 3 122641239 122641239 T C SEMA5B Missense_Mutation p.Q497R 0.24 tolerated(0.15) possibly_damaging(0.907) TCGA-56-7822-01 3 126139062 126139062 G A CCDC37 Missense_Mutation p.D358N 0.14 tolerated(0.15) benign(0.001) TCGA-56-7822-01 3 138409963 138409963 G T PIK3CB Missense_Mutation p.L639I 0.39 deleterious(0) probably_damaging(0.996) TCGA-56-7822-01 3 139279686 139279686 G C NMNAT3 3'UTR 0.27 TCGA-56-7822-01 3 142742858 142742858 A C U2SURP Missense_Mutation p.E424D 0.27 tolerated(0.18) benign(0.049) TCGA-56-7822-01 3 154001051 154001051 C G DHX36 Missense_Mutation p.E768Q 0.21 tolerated(0.33) benign(0.01) TCGA-56-7822-01 3 154146648 154146648 G A GPR149 Missense_Mutation p.P253S 0.41 deleterious(0.05) benign(0.1) TCGA-56-7822-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.21 deleterious(0.04) probably_damaging(0.96) TCGA-56-7822-01 3 179051380 179051380 G T ZNF639 Nonsense_Mutation p.E210* 0.13 TCGA-56-7822-01 3 179123116 179123116 C T GNB4 Missense_Mutation p.E260K 0.18 deleterious(0) possibly_damaging(0.604) TCGA-56-7822-01 3 179483597 179483597 G T USP13 Missense_Mutation p.A792S 0.19 tolerated(1) benign(0.009) TCGA-56-7822-01 3 184429578 184429578 G A MAGEF1 Missense_Mutation p.P11L 0.13 deleterious(0.01) probably_damaging(0.982) TCGA-56-7822-01 3 189582102 189582102 C G TP63 Missense_Mutation p.Q221E 0.16 tolerated(0.19) benign(0.338) TCGA-56-7822-01 3 195955715 195955715 A C SLC51A Missense_Mutation p.Q186P 0.18 deleterious(0) probably_damaging(0.979) TCGA-56-7822-01 3 197616387 197616387 C G IQCG 3'UTR 0.20 TCGA-56-7822-01 3 98492775 98492775 C T ST3GAL6 Nonsense_Mutation p.R95* 0.15 TCGA-56-7822-01 3 98600456 98600456 C T DCBLD2 Missense_Mutation p.E121K 0.18 deleterious(0) possibly_damaging(0.644) TCGA-56-7822-01 4 109748345 109748345 C A COL25A1 Splice_Site p.X571_splice 0.13 TCGA-56-7822-01 4 156651253 156651253 G A GUCY1A3 Missense_Mutation p.S648N 0.22 tolerated(0.22) benign(0.016) TCGA-56-7822-01 4 158256901 158256901 C T GRIA2 Silent p.L449L 0.14 TCGA-56-7822-01 4 158257765 158257765 C A GRIA2 Nonsense_Mutation p.Y570* 0.31 TCGA-56-7822-01 4 162463700 162463700 T C FSTL5 Silent p.K387K 0.13 TCGA-56-7822-01 4 164087924 164087924 G A NAF1 5'UTR 0.08 TCGA-56-7822-01 4 184240641 184240641 C A CLDN22 3'UTR 0.23 TCGA-56-7822-01 4 184366052 184366052 C G CDKN2AIP Missense_Mutation p.H34Q 0.21 tolerated(0.26) unknown(0) TCGA-56-7822-01 4 187004939 187004939 C T TLR3 Missense_Mutation p.A700V 0.20 tolerated(0.14) benign(0.303) TCGA-56-7822-01 4 187077263 187077263 G A FAM149A Missense_Mutation p.E165K 0.21 deleterious(0) probably_damaging(0.947) TCGA-56-7822-01 4 187077272 187077272 G C FAM149A Missense_Mutation p.D168H 0.22 deleterious(0) probably_damaging(0.999) TCGA-56-7822-01 4 189060945 189060945 C A TRIML1 Missense_Mutation p.A78D 0.20 deleterious(0) benign(0.031) TCGA-56-7822-01 4 3225745 3225745 G C HTT Missense_Mutation p.R2551T 0.24 probably_damaging(0.995) TCGA-56-7822-01 4 56230377 56230377 T C SRD5A3 Silent p.L167L 0.13 TCGA-56-7822-01 4 57181974 57181974 T C KIAA1211 Missense_Mutation p.L769P 0.25 tolerated(0.26) possibly_damaging(0.883) TCGA-56-7822-01 4 6062225 6062225 G A JAKMIP1 Nonsense_Mutation p.Q524* 0.35 TCGA-56-7822-01 4 70080080 70080080 C G UGT2B11 Missense_Mutation p.D121H 0.28 deleterious(0.02) probably_damaging(0.938) TCGA-56-7822-01 4 74277780 74277780 G T ALB Missense_Mutation p.D261Y 0.23 deleterious(0) probably_damaging(0.991) TCGA-56-7822-01 4 7435569 7435569 G C PSAPL1 Silent p.S346S 0.16 TCGA-56-7822-01 4 7435570 7435570 G A PSAPL1 Missense_Mutation p.S346F 0.16 deleterious(0) possibly_damaging(0.855) TCGA-56-7822-01 4 90816228 90816228 C T MMRN1 Nonsense_Mutation p.Q36* 0.22 TCGA-56-7822-01 5 108207835 108207835 C T FER Missense_Mutation p.S282F 0.18 deleterious(0) possibly_damaging(0.828) TCGA-56-7822-01 5 125911151 125911151 C T ALDH7A1 Missense_Mutation p.G219E 0.21 deleterious(0.02) probably_damaging(0.993) TCGA-56-7822-01 5 128302271 128302271 C G SLC27A6 Missense_Mutation p.C147W 0.19 deleterious(0) probably_damaging(1) TCGA-56-7822-01 5 131080380 131080380 C A FNIP1 Missense_Mutation p.W32C 0.23 deleterious(0) possibly_damaging(0.866) TCGA-56-7822-01 5 13814750 13814750 C A DNAH5 Missense_Mutation p.M2398I 0.47 benign(0.019) TCGA-56-7822-01 5 139946805 139946805 C T SLC35A4 Silent p.A17A 0.23 TCGA-56-7822-01 5 140050851 140050851 C T WDR55 3'UTR 0.39 TCGA-56-7822-01 5 142689724 142689724 C T NR3C1 Missense_Mutation p.R470Q 0.29 deleterious(0) probably_damaging(1) TCGA-56-7822-01 5 176618992 176618992 G A NSD1 Silent p.P345P 0.39 TCGA-56-7822-01 5 179201034 179201034 G A MAML1 Missense_Mutation p.G736D 0.27 deleterious(0.01) benign(0.193) TCGA-56-7822-01 5 21842281 21842281 C G CDH12 Missense_Mutation p.R268P 0.16 deleterious(0) probably_damaging(0.988) TCGA-56-7822-01 5 32229981 32229981 G C MTMR12 Missense_Mutation p.S716C 0.31 tolerated(0.18) benign(0.401) TCGA-56-7822-01 5 33936956 33936956 G T RXFP3 Silent p.T37T 0.32 TCGA-56-7822-01 5 5239942 5239942 C A ADAMTS16 Nonsense_Mutation p.Y809* 0.18 TCGA-56-7822-01 6 100838767 100838767 G T SIM1 Missense_Mutation p.Q591K 0.43 tolerated_low_confidence(1) benign(0.025) TCGA-56-7822-01 6 10709607 10709607 G C PAK1IP1 Silent p.L367L 0.23 TCGA-56-7822-01 6 108831497 108831497 C T LACE1 Missense_Mutation p.A382V 0.18 tolerated(0.27) benign(0.027) TCGA-56-7822-01 6 119345600 119345600 C T FAM184A Missense_Mutation p.E180K 0.15 deleterious(0.05) probably_damaging(0.917) TCGA-56-7822-01 6 122733533 122733533 C G HSF2 Missense_Mutation p.L37V 0.16 tolerated(0.1) probably_damaging(0.991) TCGA-56-7822-01 6 127898516 127898516 G C C6orf58 Silent p.G62G 0.07 TCGA-56-7822-01 6 146264848 146264848 C T SHPRH Missense_Mutation p.D557N 0.10 tolerated_low_confidence(0.2) possibly_damaging(0.491) TCGA-56-7822-01 6 152577893 152577893 C T SYNE1 Missense_Mutation p.S6327N 0.06 benign(0.006) TCGA-56-7822-01 6 152631135 152631135 C T SYNE1 Missense_Mutation p.M5679I 0.43 probably_damaging(0.985) TCGA-56-7822-01 6 152728223 152728223 C G SYNE1 Missense_Mutation p.V2217L 0.16 benign(0.002) TCGA-56-7822-01 6 152768646 152768646 C G SYNE1 Missense_Mutation p.E1206Q 0.17 possibly_damaging(0.864) TCGA-56-7822-01 6 160479149 160479149 T A IGF2R Missense_Mutation p.I964N 0.13 tolerated(0.11) benign(0.003) TCGA-56-7822-01 6 168227102 168227102 C A MLLT4 5'Flank 0.09 TCGA-56-7822-01 6 168351910 168351910 C G MLLT4 Nonsense_Mutation p.Y1285* 0.13 TCGA-56-7822-01 6 170153994 170153994 C T ERMARD Missense_Mutation p.S14F 0.17 deleterious(0) probably_damaging(0.999) TCGA-56-7822-01 6 17616386 17616386 G C NUP153 Missense_Mutation p.S1457C 0.11 deleterious(0.02) possibly_damaging(0.897) TCGA-56-7822-01 6 26033708 26033708 C T HIST1H2AB Missense_Mutation p.R30Q 0.07 deleterious_low_confidence(0) probably_damaging(0.915) TCGA-56-7822-01 6 26273251 26273251 G C HIST1H2BI Missense_Mutation p.K16N 0.14 deleterious_low_confidence(0.01) benign(0.067) TCGA-56-7822-01 6 26409888 26409888 C G BTN3A1 Missense_Mutation p.F281L 0.26 tolerated(0.65) benign(0.017) TCGA-56-7822-01 6 31603198 31603198 G A PRRC2A Missense_Mutation p.D1777N 0.19 unknown(0) TCGA-56-7822-01 6 34804074 34804074 A T UHRF1BP1 Missense_Mutation p.I328F 0.38 deleterious(0) possibly_damaging(0.821) TCGA-56-7822-01 6 38813413 38813413 A C DNAH8 Missense_Mutation p.N1420H 0.46 benign(0.248) TCGA-56-7822-01 6 42036321 42036321 G A TAF8 Silent p.E252E 0.14 TCGA-56-7822-01 6 46672389 46672389 C G PLA2G7 Missense_Mutation p.D412H 0.30 tolerated(0.12) benign(0.033) TCGA-56-7822-01 6 72945321 72945321 C A RIMS1 Missense_Mutation p.H583N 0.37 deleterious(0) possibly_damaging(0.613) TCGA-56-7822-01 6 84269883 84269883 G T SNAP91 Silent p.V857V 0.44 TCGA-56-7822-01 6 84798828 84798828 G C MRAP2 Missense_Mutation p.E82D 0.19 tolerated(0.13) probably_damaging(0.99) TCGA-56-7822-01 6 85446278 85446278 G T TBX18 3'UTR 0.25 TCGA-56-7822-01 6 89563396 89563396 T C RNGTT Silent p.P328P 0.23 TCGA-56-7822-01 7 100678062 100678062 C A MUC17 Missense_Mutation p.S1122Y 0.03 unknown(0) TCGA-56-7822-01 7 103179607 103179607 G A RELN Silent p.V2366V 0.27 TCGA-56-7822-01 7 111487130 111487130 C T DOCK4 Silent p.L842L 0.11 TCGA-56-7822-01 7 116955207 116955207 C T WNT2 Missense_Mutation p.R169H 0.23 deleterious(0) possibly_damaging(0.771) TCGA-56-7822-01 7 1192701 1192701 C G ZFAND2A 3'UTR 0.34 TCGA-56-7822-01 7 126173324 126173324 G T GRM8 Silent p.S704S 0.27 TCGA-56-7822-01 7 130007403 130007403 G C CPA5 Missense_Mutation p.Q343H 0.19 tolerated(0.61) benign(0.002) TCGA-56-7822-01 7 141752164 141752164 G T MGAM Missense_Mutation p.R959M 0.29 deleterious(0.05) benign(0.043) TCGA-56-7822-01 7 150732748 150732748 G T ABCB8 Missense_Mutation p.M282I 0.20 tolerated(0.34) benign(0.004) TCGA-56-7822-01 7 150936169 150936174 TGCTGC - SMARCD3 3'UTR 0.19 TCGA-56-7822-01 7 21609851 21609851 G T DNAH11 Missense_Mutation p.W453C 0.24 probably_damaging(1) TCGA-56-7822-01 7 24747789 24747789 G A DFNA5 Missense_Mutation p.A316V 0.22 tolerated(0.22) benign(0.011) TCGA-56-7822-01 7 36194029 36194029 C T EEPD1 Silent p.N32N 0.25 TCGA-56-7822-01 7 38304990 38304990 G A TRGC1 Silent p.N97N 0.32 TCGA-56-7822-01 7 38370124 38370124 C T TRGV8 Silent p.E58E 0.23 TCGA-56-7822-01 7 41739818 41739818 G T INHBA Missense_Mutation p.P52Q 0.25 tolerated(0.77) benign(0.284) TCGA-56-7822-01 7 51096034 51096034 G A COBL Missense_Mutation p.S920L 0.16 tolerated(0.15) benign(0.02) TCGA-56-7822-01 7 53104150 53104150 C A POM121L12 Silent p.S262S 0.19 TCGA-56-7822-01 7 56066709 56066709 A G GBAS Missense_Mutation p.I269V 0.24 tolerated(0.2) benign(0.186) TCGA-56-7822-01 7 57194344 57194344 A T ZNF479 Missense_Mutation p.Y41N 0.15 deleterious(0) probably_damaging(0.999) TCGA-56-7822-01 7 6048970 6048970 T A AIMP2 5'UTR 0.29 TCGA-56-7822-01 7 64452519 64452519 C T ERV3-1 Missense_Mutation p.G296R 0.18 tolerated(1) benign(0.41) TCGA-56-7822-01 7 76254962 76254962 G A POMZP3 Missense_Mutation p.S35L 0.24 deleterious_low_confidence(0) unknown(0) TCGA-56-7822-01 7 76255471 76255471 G A POMZP3 5'UTR 0.42 TCGA-56-7822-01 7 92732281 92732281 C G SAMD9 Missense_Mutation p.E1044Q 0.28 deleterious(0.02) benign(0.397) TCGA-56-7822-01 8 100115327 100115327 C T VPS13B Missense_Mutation p.R187C 0.11 deleterious(0) possibly_damaging(0.876) TCGA-56-7822-01 8 100454632 100454632 G A VPS13B Missense_Mutation p.E1072K 0.19 deleterious(0) benign(0.262) TCGA-56-7822-01 8 101054142 101054142 G C RGS22 Nonsense_Mutation p.S609* 0.14 TCGA-56-7822-01 8 104075415 104075415 G C ATP6V1C1 Missense_Mutation p.E263Q 0.23 tolerated(0.27) possibly_damaging(0.447) TCGA-56-7822-01 8 104513137 104513137 G T RIMS2 Missense_Mutation p.R8L 0.38 deleterious_low_confidence(0) benign(0.13) TCGA-56-7822-01 8 113651102 113651102 G A CSMD3 Missense_Mutation p.H1117Y 0.19 tolerated(1) possibly_damaging(0.85) TCGA-56-7822-01 8 125575183 125575183 G A MTSS1 Missense_Mutation p.S292L 0.24 tolerated(0.39) possibly_damaging(0.806) TCGA-56-7822-01 8 126056246 126056246 T C KIAA0196 Missense_Mutation p.K920E 0.17 tolerated(0.95) benign(0.122) TCGA-56-7822-01 8 133053888 133053888 C T OC90 Silent p.L76L 0.09 TCGA-56-7822-01 8 144239677 144239677 G C LY6H Missense_Mutation p.A159G 0.42 tolerated(0.09) unknown(0) TCGA-56-7822-01 8 144406691 144406691 G C TOP1MT Missense_Mutation p.I260M 0.17 tolerated(0.08) possibly_damaging(0.781) TCGA-56-7822-01 8 145003361 145003361 G A PLEC Missense_Mutation p.S1194L 0.18 unknown(0) TCGA-56-7822-01 8 146067088 146067088 A G ZNF7 Missense_Mutation p.E199G 0.42 tolerated(0.2) benign(0.021) TCGA-56-7822-01 8 2092646 2092646 A G MYOM2 Missense_Mutation p.K1380R 0.39 deleterious(0.04) possibly_damaging(0.888) TCGA-56-7822-01 8 21550665 21550665 G T GFRA2 3'UTR 0.56 TCGA-56-7822-01 8 32618041 32618041 C T NRG1 Intron 0.21 TCGA-56-7822-01 8 41790071 41790071 G T KAT6A Silent p.R1889R 0.67 TCGA-56-7822-01 8 41798527 41798527 G C KAT6A Missense_Mutation p.L958V 0.15 probably_damaging(0.914) TCGA-56-7822-01 8 42977481 42977481 G A POMK Missense_Mutation p.V172M 0.30 tolerated(0.27) benign(0.049) TCGA-56-7822-01 8 51449331 51449331 C T SNTG1 Missense_Mutation p.R215C 0.20 deleterious(0.01) probably_damaging(0.932) TCGA-56-7822-01 8 51569530 51569530 C T SNTG1 Missense_Mutation p.S304F 0.23 deleterious(0.01) benign(0.212) TCGA-56-7822-01 8 53589086 53589086 G A RB1CC1 Missense_Mutation p.L139F 0.15 deleterious(0) probably_damaging(0.999) TCGA-56-7822-01 8 57025918 57025918 C G MOS Missense_Mutation p.L208F 0.15 tolerated(0.61) benign(0.246) TCGA-56-7822-01 8 62415898 62415898 C A ASPH 3'UTR 0.32 TCGA-56-7822-01 8 73479924 73479924 C T KCNB2 5'UTR 0.34 TCGA-56-7822-01 8 86127236 86127236 T G C8orf59 Silent p.R49R 0.54 TCGA-56-7822-01 8 93074843 93074843 C G RUNX1T1 Intron 0.30 TCGA-56-7822-01 9 109690433 109690433 G C ZNF462 Missense_Mutation p.E1414Q 0.14 benign(0.254) TCGA-56-7822-01 9 114476825 114476825 A G C9orf84 Missense_Mutation p.I708T 0.13 deleterious(0.02) probably_damaging(0.936) TCGA-56-7822-01 9 114994489 114994489 G A PTBP3 Missense_Mutation p.L338F 0.21 tolerated(0.06) benign(0.114) TCGA-56-7822-01 9 118949460 118949460 C G PAPPA Nonsense_Mutation p.S148* 0.33 TCGA-56-7822-01 9 139243213 139243213 G T GPSM1 Silent p.L424L 0.10 TCGA-56-7822-01 9 34977130 34977130 C T KIAA1045 Silent p.A300A 0.21 TCGA-56-7822-01 9 37428564 37428564 G A GRHPR Missense_Mutation p.R163H 0.31 deleterious(0) possibly_damaging(0.647) TCGA-56-7822-01 9 5069067 5069067 G T JAK2 Nonsense_Mutation p.E458* 0.31 TCGA-56-7822-01 9 8528635 8528635 A T PTPRD Missense_Mutation p.V166E 0.17 deleterious(0) probably_damaging(0.998) TCGA-56-7822-01 9 91616110 91616110 C T S1PR3 5'UTR 0.15 TCGA-56-7822-01 9 96051503 96051503 A T WNK2 Silent p.P1526P 0.18 TCGA-56-7822-01 X 100491007 100491007 C T DRP2 Silent p.N92N 0.35 TCGA-56-7822-01 X 100911575 100911575 C T ARMCX2 Missense_Mutation p.E334K 0.30 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-56-7822-01 X 101138645 101138645 C A ZMAT1 Missense_Mutation p.R585I 0.12 tolerated(0.15) benign(0.095) TCGA-56-7822-01 X 101821968 101821968 C A NXF4 RNA 0.19 TCGA-56-7822-01 X 101912589 101912589 G C GPRASP1 Missense_Mutation p.D1250H 0.23 deleterious(0) probably_damaging(0.989) TCGA-56-7822-01 X 101971666 101971666 G T GPRASP2 Missense_Mutation p.M623I 0.20 tolerated(0.11) benign(0.271) TCGA-56-7822-01 X 102864314 102864314 C G TCEAL3 Missense_Mutation p.R108G 0.24 deleterious(0) probably_damaging(0.986) TCGA-56-7822-01 X 106186299 106186299 C A MORC4 Missense_Mutation p.G608W 0.27 deleterious(0) possibly_damaging(0.664) TCGA-56-7822-01 X 107334705 107334705 T C PSMD10 Missense_Mutation p.S16G 0.31 tolerated(0.34) benign(0) TCGA-56-7822-01 X 109695804 109695804 G T RGAG1 Silent p.L653L 0.41 TCGA-56-7822-01 X 111019954 111019954 A G TRPC5 Missense_Mutation p.F837L 0.31 tolerated_low_confidence(0.24) benign(0.002) TCGA-56-7822-01 X 117960148 117960148 C A ZCCHC12 Missense_Mutation p.S314Y 0.23 tolerated(0.09) benign(0.053) TCGA-56-7822-01 X 13337781 13337781 G C ATXN3L Missense_Mutation p.I91M 0.19 deleterious(0.04) benign(0.009) TCGA-56-7822-01 X 135438303 135438303 G A GPR112 Silent p.E2302E 0.10 TCGA-56-7822-01 X 140994647 140994647 C A MAGEC1 Missense_Mutation p.S486Y 0.24 tolerated_low_confidence(0.08) possibly_damaging(0.608) TCGA-56-7822-01 X 140994648 140994648 C A MAGEC1 Silent p.S486S 0.24 TCGA-56-7822-01 X 147744080 147744080 A G AFF2 Missense_Mutation p.T278A 0.24 deleterious(0.02) benign(0.171) TCGA-56-7822-01 X 149013341 149013341 C A MAGEA8 Missense_Mutation p.P99T 0.20 tolerated(0.11) possibly_damaging(0.691) TCGA-56-7822-01 X 150832695 150832695 C T PASD1 Nonsense_Mutation p.Q316* 0.16 TCGA-56-7822-01 X 152610218 152610218 T A ZNF275 Intron 0.24 TCGA-56-7822-01 X 152610219 152610219 G T ZNF275 Intron 0.26 TCGA-56-7822-01 X 152825193 152825193 C A ATP2B3 Missense_Mutation p.P878T 0.25 deleterious(0) probably_damaging(0.998) TCGA-56-7822-01 X 153037428 153037428 G A PLXNB3 Missense_Mutation p.R899Q 0.22 tolerated(0.47) benign(0.009) TCGA-56-7822-01 X 153050455 153050455 G A SRPK3 Missense_Mutation p.E475K 0.25 deleterious(0) probably_damaging(0.953) TCGA-56-7822-01 X 153130652 153130652 G T L1CAM Silent p.P921P 0.25 TCGA-56-7822-01 X 153170609 153170609 G A AVPR2 Missense_Mutation p.A4T 0.25 tolerated_low_confidence(0.26) benign(0.054) TCGA-56-7822-01 X 153418560 153418560 C T OPN1LW Missense_Mutation p.P186L 0.16 deleterious(0.01) benign(0.177) TCGA-56-7822-01 X 153537704 153537704 C - TKTL1 Frame_Shift_Del p.S87Cfs*38 0.27 TCGA-56-7822-01 X 153678083 153678083 C A FAM50A Missense_Mutation p.H260Q 0.22 deleterious(0.04) probably_damaging(0.917) TCGA-56-7822-01 X 154014588 154014588 C A MPP1 Missense_Mutation p.D190Y 0.24 deleterious(0) probably_damaging(0.991) TCGA-56-7822-01 X 154743764 154743764 T A TMLHE Missense_Mutation p.N174I 0.28 deleterious(0.01) benign(0.218) TCGA-56-7822-01 X 17743765 17743765 A G NHS Silent p.R492R 0.26 TCGA-56-7822-01 X 21550002 21550002 G T CNKSR2 Missense_Mutation p.D374Y 0.23 deleterious(0) probably_damaging(0.934) TCGA-56-7822-01 X 23697313 23697313 G T PRDX4 Missense_Mutation p.G170W 0.25 deleterious(0) probably_damaging(1) TCGA-56-7822-01 X 34961276 34961276 G T FAM47B Missense_Mutation p.V110L 0.24 tolerated(0.09) benign(0.002) TCGA-56-7822-01 X 36117869 36117869 C A CHDC2 Missense_Mutation p.S242Y 0.20 deleterious(0) benign(0.405) TCGA-56-7822-01 X 37028540 37028540 G T FAM47C Missense_Mutation p.R686L 0.21 tolerated(0.38) benign(0.365) TCGA-56-7822-01 X 39913149 39913149 C T BCOR Missense_Mutation p.V1656M 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-56-7822-01 X 40994043 40994043 A - USP9X Frame_Shift_Del p.I131Ffs*7 0.20 TCGA-56-7822-01 X 48825761 48825761 G A KCND1 Silent p.S306S 0.23 TCGA-56-7822-01 X 53114824 53114824 G T TSPYL2 Missense_Mutation p.G417V 0.26 deleterious_low_confidence(0.01) benign(0.191) TCGA-56-7822-01 X 54020203 54020203 G A PHF8 Missense_Mutation p.S522F 0.32 deleterious(0.02) possibly_damaging(0.641) TCGA-56-7822-01 X 54209088 54209088 C G FAM120C Missense_Mutation p.E182Q 0.16 tolerated(0.08) benign(0.199) TCGA-56-7822-01 X 54781466 54781466 A T ITIH6 Silent p.S1062S 0.23 TCGA-56-7822-01 X 70341198 70341198 G C MED12 Missense_Mutation p.E253Q 0.28 probably_damaging(0.999) TCGA-56-7822-01 X 70601700 70601700 C G TAF1 Missense_Mutation p.Q510E 0.34 tolerated(0.75) benign(0.011) TCGA-56-7822-01 X 78217132 78217132 T C P2RY10 3'UTR 0.25 TCGA-56-7822-01 X 82763711 82763711 A C POU3F4 Missense_Mutation p.S127R 0.16 tolerated(0.05) benign(0.099) TCGA-56-7822-01 Y 4925370 4925370 C A PCDH11Y Missense_Mutation p.P169Q 0.42 deleterious(0) probably_damaging(1) TCGA-56-7822-01 Y 4967533 4967533 G T PCDH11Y Silent p.T638T 0.39 TCGA-56-7823-01 10 133761123 133761123 C A PPP2R2D Silent p.R273R 0.70 TCGA-56-7823-01 10 31815616 31815616 G T ZEB1 Missense_Mutation p.E934D 0.33 deleterious(0.01) possibly_damaging(0.669) TCGA-56-7823-01 10 45430357 45430357 C A TMEM72 Silent p.P201P 0.31 TCGA-56-7823-01 10 45602079 45602079 G T RSU1P2 RNA 0.29 TCGA-56-7823-01 10 45938501 45938501 G A ALOX5 Missense_Mutation p.G430S 0.60 tolerated(0.15) probably_damaging(1) TCGA-56-7823-01 10 50535036 50535036 G T C10orf71 3'UTR 0.37 TCGA-56-7823-01 11 101793469 101793469 G T KIAA1377 Missense_Mutation p.V76L 0.29 deleterious(0.04) benign(0.081) TCGA-56-7823-01 11 102195918 102195918 G C BIRC3 Silent p.L226L 0.40 TCGA-56-7823-01 11 118773125 118773125 G A BCL9L Missense_Mutation p.P443S 0.41 benign(0.01) TCGA-56-7823-01 11 118900005 118900005 G A SLC37A4 Silent p.Y25Y 0.47 TCGA-56-7823-01 11 123676244 123676244 C T OR6M1 Missense_Mutation p.A272T 0.42 tolerated(0.43) benign(0.079) TCGA-56-7823-01 11 123909693 123909693 G T OR10G7 Missense_Mutation p.L6I 0.20 tolerated(0.19) benign(0.003) TCGA-56-7823-01 11 1267489 1267489 T A MUC5B Missense_Mutation p.S3127T 0.35 unknown(0) TCGA-56-7823-01 11 134086953 134086953 T A NCAPD3 Missense_Mutation p.S87C 0.38 deleterious(0.04) benign(0.003) TCGA-56-7823-01 11 22249081 22249081 C G ANO5 Missense_Mutation p.F199L 0.40 deleterious(0.01) probably_damaging(0.993) TCGA-56-7823-01 11 22363206 22363206 C A SLC17A6 Silent p.I73I 0.40 TCGA-56-7823-01 11 31086636 31086636 G T DCDC1 Missense_Mutation p.T788K 0.30 tolerated(0.21) benign(0.277) TCGA-56-7823-01 11 43819959 43819959 C T HSD17B12 Missense_Mutation p.L125F 0.43 deleterious(0) probably_damaging(1) TCGA-56-7823-01 11 43837040 43837040 G T HSD17B12 Missense_Mutation p.D149Y 0.40 deleterious(0) probably_damaging(0.981) TCGA-56-7823-01 11 51412063 51412063 G A OR4A5 Silent p.F111F 0.43 TCGA-56-7823-01 11 55606765 55606765 T A OR5D16 Missense_Mutation p.F180I 0.42 tolerated(0.31) probably_damaging(1) TCGA-56-7823-01 11 56020443 56020443 G A OR5T3 Silent p.L256L 0.40 TCGA-56-7823-01 11 56058484 56058484 C T OR8H1 Missense_Mutation p.D19N 0.48 tolerated(0.12) benign(0.047) TCGA-56-7823-01 11 57097599 57097599 G C SSRP1 Missense_Mutation p.N483K 0.31 tolerated(0.33) benign(0.005) TCGA-56-7823-01 11 6816702 6816702 G A OR6A2 Missense_Mutation p.P80S 0.40 deleterious(0.01) probably_damaging(1) TCGA-56-7823-01 11 6816968 6816968 G T OR6A2 5'UTR 0.34 TCGA-56-7823-01 11 74800717 74800717 G C OR2AT4 Silent p.P14P 0.37 TCGA-56-7823-01 11 85445270 85445270 C A SYTL2 Nonsense_Mutation p.G367* 0.37 TCGA-56-7823-01 11 86159212 86159212 A T ME3 Missense_Mutation p.V406E 0.24 deleterious(0.01) benign(0.208) TCGA-56-7823-01 11 865943 865943 G C TSPAN4 Missense_Mutation p.W197S 0.36 deleterious(0) probably_damaging(0.994) TCGA-56-7823-01 11 93528222 93528222 T G MED17 Missense_Mutation p.F336L 0.46 tolerated(0.29) probably_damaging(0.998) TCGA-56-7823-01 12 100897147 100897147 G T NR1H4 5'UTR 0.35 TCGA-56-7823-01 12 104054472 104054472 C A STAB2 Silent p.A600A 0.42 TCGA-56-7823-01 12 109311891 109311891 G T SVOP Silent p.L361L 0.22 TCGA-56-7823-01 12 113306380 113306380 C G RPH3A Missense_Mutation p.P197R 0.29 tolerated(0.24) benign(0.025) TCGA-56-7823-01 12 113629128 113629128 A G RITA1 Missense_Mutation p.T106A 0.42 deleterious(0.02) benign(0.201) TCGA-56-7823-01 12 116440823 116440823 C G MED13L Missense_Mutation p.V852L 0.24 tolerated(0.72) unknown(0) TCGA-56-7823-01 12 120128137 120128137 C A CIT Missense_Mutation p.R2002L 0.32 deleterious_low_confidence(0) possibly_damaging(0.83) TCGA-56-7823-01 12 120567185 120567185 C A GCN1L1 Missense_Mutation p.K2595N 0.42 probably_damaging(0.925) TCGA-56-7823-01 12 122439497 122439497 C G WDR66 Silent p.S1110S 0.40 TCGA-56-7823-01 12 129559572 129559572 A T TMEM132D Missense_Mutation p.S716R 0.39 deleterious(0) probably_damaging(0.984) TCGA-56-7823-01 12 1749134 1749134 G T WNT5B Missense_Mutation p.G205C 0.27 deleterious(0) probably_damaging(0.999) TCGA-56-7823-01 12 20868156 20868156 C T SLCO1C1 Nonsense_Mutation p.Q205* 0.46 TCGA-56-7823-01 12 2595360 2595360 C A CACNA1C Missense_Mutation p.A283D 0.38 deleterious(0) probably_damaging(0.998) TCGA-56-7823-01 12 26553145 26553145 G T ITPR2 Silent p.L2482L 0.42 TCGA-56-7823-01 12 2675676 2675676 C A CACNA1C Missense_Mutation p.L533M 0.26 tolerated(0.05) probably_damaging(0.91) TCGA-56-7823-01 12 38710649 38710649 A G ALG10B 5'UTR 0.43 TCGA-56-7823-01 12 49361859 49361859 C A WNT10B Missense_Mutation p.W194L 0.52 deleterious(0) probably_damaging(0.998) TCGA-56-7823-01 12 49361860 49361860 A T WNT10B Missense_Mutation p.W194R 0.52 deleterious(0) probably_damaging(0.999) TCGA-56-7823-01 12 49717633 49717633 G T TROAP Missense_Mutation p.W50C 0.42 tolerated(0.06) possibly_damaging(0.627) TCGA-56-7823-01 12 57593158 57593158 C T LRP1 Silent p.V3280V 0.40 TCGA-56-7823-01 12 59271404 59271404 T A LRIG3 Missense_Mutation p.T772S 0.08 tolerated(0.14) possibly_damaging(0.85) TCGA-56-7823-01 12 64873834 64873834 A C TBK1 Silent p.G248G 0.36 TCGA-56-7823-01 12 75436070 75436070 T C KCNC2 3'UTR 0.44 TCGA-56-7823-01 12 80729816 80729816 G T OTOGL Missense_Mutation p.W1490L 0.29 tolerated(0.34) benign(0.004) TCGA-56-7823-01 12 85497785 85497785 G T LRRIQ1 Missense_Mutation p.L1071F 0.25 deleterious(0) probably_damaging(0.999) TCGA-56-7823-01 12 89918312 89918312 C A GALNT4 Missense_Mutation p.W5C 0.28 deleterious_low_confidence(0) possibly_damaging(0.87) TCGA-56-7823-01 13 113748834 113748834 G C MCF2L Missense_Mutation p.S987T 0.23 tolerated(0.6) benign(0.018) TCGA-56-7823-01 13 25171586 25171586 C T RP11-556N21.1 RNA 0.74 TCGA-56-7823-01 13 25744105 25744105 G A AMER2 Silent p.S551S 0.92 TCGA-56-7823-01 13 26621017 26621017 C A SHISA2 Silent p.R174R 0.68 TCGA-56-7823-01 13 43566151 43566151 G A EPSTI1 Missense_Mutation p.P51S 0.88 tolerated(0.08) possibly_damaging(0.548) TCGA-56-7823-01 13 67799657 67799657 G T PCDH9 Silent p.T972T 0.83 TCGA-56-7823-01 13 70275839 70275839 G A KLHL1 Missense_Mutation p.P748S 0.67 deleterious(0) benign(0.418) TCGA-56-7823-01 14 101492430 101492430 C A MIR758 RNA 0.51 TCGA-56-7823-01 14 106691810 106691810 T A IGHV3-21 Missense_Mutation p.S72C 0.49 tolerated_low_confidence(0.07) possibly_damaging(0.566) TCGA-56-7823-01 14 107131062 107131062 C A IGHV3-66 Nonsense_Mutation p.E107* 0.05 TCGA-56-7823-01 14 20692318 20692318 C - OR11H6 Frame_Shift_Del p.S152Pfs*3 0.35 TCGA-56-7823-01 14 21462206 21462206 A T METTL17 Silent p.A227A 0.40 TCGA-56-7823-01 14 24682737 24682737 G A CHMP4A Missense_Mutation p.A13V 0.46 deleterious_low_confidence(0) benign(0.091) TCGA-56-7823-01 14 24737752 24737752 C T RABGGTA Missense_Mutation p.G325D 0.54 tolerated(0.53) benign(0.211) TCGA-56-7823-01 14 24795065 24795065 G T ADCY4 Missense_Mutation p.P562T 0.55 tolerated(0.47) benign(0.075) TCGA-56-7823-01 14 42360545 42360545 G T LRFN5 Missense_Mutation p.G493V 0.35 tolerated(0.24) benign(0.045) TCGA-56-7823-01 14 45542793 45542793 A T FAM179B 3'UTR 0.46 TCGA-56-7823-01 14 55509844 55509844 G T SOCS4 Missense_Mutation p.G29C 0.37 tolerated(0.06) probably_damaging(1) TCGA-56-7823-01 14 59113503 59113503 C G DACT1 Missense_Mutation p.A721G 0.49 tolerated(0.17) possibly_damaging(0.79) TCGA-56-7823-01 14 62187253 62187253 C T HIF1A Silent p.T87T 0.46 TCGA-56-7823-01 14 67525392 67525392 G T GPHN Missense_Mutation p.V345L 0.54 deleterious(0.04) probably_damaging(0.976) TCGA-56-7823-01 14 80328067 80328067 G T NRXN3 Silent p.S982S 0.48 TCGA-56-7823-01 15 25446391 25446391 C A SNORD115-19 5'Flank 0.54 TCGA-56-7823-01 15 28235788 28235788 C T OCA2 Silent p.V350V 0.42 TCGA-56-7823-01 15 54685243 54685243 C A UNC13C Intron 0.26 TCGA-56-7823-01 15 62939618 62939618 C A TLN2 Silent p.R37R 0.28 TCGA-56-7823-01 15 76673844 76673844 C A SCAPER Missense_Mutation p.G1194C 0.14 deleterious(0.01) probably_damaging(0.959) TCGA-56-7823-01 15 79088955 79088955 A T ADAMTS7 Missense_Mutation p.Y266N 0.42 deleterious(0) probably_damaging(0.997) TCGA-56-7823-01 15 84651707 84651707 C A ADAMTSL3 Silent p.T1109T 0.41 TCGA-56-7823-01 15 85186760 85186760 C T WDR73 Missense_Mutation p.A360T 0.31 deleterious(0.04) possibly_damaging(0.801) TCGA-56-7823-01 16 10788583 10788583 A T TEKT5 Missense_Mutation p.W50R 0.47 deleterious(0) possibly_damaging(0.904) TCGA-56-7823-01 16 21213259 21213259 T G ZP2 Missense_Mutation p.E458A 0.39 deleterious(0) probably_damaging(0.98) TCGA-56-7823-01 16 24372967 24372967 C T CACNG3 Missense_Mutation p.S244F 0.40 deleterious(0.03) probably_damaging(0.961) TCGA-56-7823-01 16 32891040 32891040 C T SLC6A10P Intron 0.15 TCGA-56-7823-01 16 51174277 51174277 G A SALL1 Missense_Mutation p.P619L 0.50 tolerated(0.14) benign(0.009) TCGA-56-7823-01 16 56916388 56916388 G T SLC12A3 Missense_Mutation p.A550S 0.75 deleterious(0.01) probably_damaging(0.996) TCGA-56-7823-01 16 67264394 67264394 C T FHOD1 Silent p.L958L 0.71 TCGA-56-7823-01 16 70841637 70841637 G T HYDIN Missense_Mutation p.P5071H 0.79 probably_damaging(0.979) TCGA-56-7823-01 16 847914 847914 G T CHTF18 Missense_Mutation p.R956L 0.38 deleterious(0) probably_damaging(0.99) TCGA-56-7823-01 16 89347620 89347620 T A ANKRD11 Missense_Mutation p.Q1777L 0.89 possibly_damaging(0.864) TCGA-56-7823-01 16 90160457 90160457 C A TUBB8P7 Intron 0.38 TCGA-56-7823-01 17 11833347 11833347 C A DNAH9 Silent p.I4014I 0.81 TCGA-56-7823-01 17 15142903 15142903 G A PMP22 Silent p.T68T 0.53 TCGA-56-7823-01 17 26696317 26696317 A T VTN Missense_Mutation p.L221H 0.35 deleterious(0) probably_damaging(0.994) TCGA-56-7823-01 17 37188010 37188010 G A CTD-2206N4.2 5'Flank 0.36 TCGA-56-7823-01 17 37265553 37265553 C T PLXDC1 Missense_Mutation p.R116Q 0.31 tolerated(0.44) benign(0.004) TCGA-56-7823-01 17 39767693 39767693 C A KRT16 Silent p.R225R 0.43 TCGA-56-7823-01 17 40375428 40375428 G T STAT5B Silent p.I174I 0.44 TCGA-56-7823-01 17 41061343 41061343 T C G6PC Missense_Mutation p.L157S 0.45 tolerated(1) benign(0.014) TCGA-56-7823-01 17 41341688 41341688 G C NBR1 Missense_Mutation p.L188F 0.40 tolerated(0.72) benign(0.005) TCGA-56-7823-01 17 49077021 49077021 C A SPAG9 Splice_Site p.X555_splice 0.91 TCGA-56-7823-01 17 62133112 62133112 G A ERN1 Missense_Mutation p.A532V 0.15 tolerated(0.14) possibly_damaging(0.663) TCGA-56-7823-01 17 66303580 66303580 A T ARSG 5'UTR 0.40 TCGA-56-7823-01 17 74774279 74774279 G C MFSD11 Missense_Mutation p.A399P 0.27 deleterious(0) probably_damaging(0.998) TCGA-56-7823-01 17 7577496 7577496 G C TP53 Intron 0.20 TCGA-56-7823-01 17 7578290 7578290 C A TP53 Splice_Site p.X187_splice 0.90 TCGA-56-7823-01 17 7976598 7976598 G C ALOX12B Silent p.S598S 0.82 TCGA-56-7823-01 18 23724533 23724533 G C PSMA8 Missense_Mutation p.R38P 0.81 deleterious(0.01) probably_damaging(0.945) TCGA-56-7823-01 18 57122089 57122089 C A CCBE1 Missense_Mutation p.K216N 0.70 tolerated(0.09) probably_damaging(0.94) TCGA-56-7823-01 18 64235758 64235758 C G CDH19 Missense_Mutation p.E129Q 0.88 deleterious(0) probably_damaging(0.999) TCGA-56-7823-01 19 13445282 13445282 C T CACNA1A Missense_Mutation p.V370M 0.44 probably_damaging(0.934) TCGA-56-7823-01 19 15536405 15536405 G C WIZ Missense_Mutation p.S419C 0.41 deleterious(0) possibly_damaging(0.882) TCGA-56-7823-01 19 22235368 22235368 G T ZNF257 5'UTR 0.53 TCGA-56-7823-01 19 22363848 22363848 G A ZNF676 Missense_Mutation p.P224L 0.30 tolerated(0.14) probably_damaging(0.998) TCGA-56-7823-01 19 29215210 29215210 G A AC005307.3 RNA 0.26 TCGA-56-7823-01 19 33623288 33623288 G T WDR88 Silent p.L71L 0.39 TCGA-56-7823-01 19 36505142 36505142 C A CLIP3 3'Flank 0.39 TCGA-56-7823-01 19 38993569 38993569 G A RYR1 Missense_Mutation p.D2629N 0.51 benign(0.1) TCGA-56-7823-01 19 41038634 41038634 G A SPTBN4 Missense_Mutation p.A1351T 0.41 deleterious(0.01) probably_damaging(0.99) TCGA-56-7823-01 19 41235310 41235310 A G ITPKC Missense_Mutation p.M487V 0.64 deleterious(0.05) probably_damaging(0.994) TCGA-56-7823-01 19 4171167 4171167 G T CREB3L3 Missense_Mutation p.V324F 0.46 deleterious(0) benign(0.08) TCGA-56-7823-01 19 43382411 43382411 C G PSG1 Missense_Mutation p.W28C 0.04 deleterious(0) probably_damaging(0.944) TCGA-56-7823-01 19 47127073 47127073 C A PTGIR Missense_Mutation p.R137L 0.32 tolerated(0.66) benign(0.055) TCGA-56-7823-01 19 48305266 48305266 C A TPRX1 Missense_Mutation p.W334C 0.46 tolerated(0.11) possibly_damaging(0.878) TCGA-56-7823-01 19 51503976 51503976 T G KLK8 Splice_Site p.X24_splice 0.42 TCGA-56-7823-01 19 53762682 53762682 G T VN1R2 Missense_Mutation p.A352S 0.39 tolerated(1) benign(0.157) TCGA-56-7823-01 19 55148180 55148180 C A LILRB1 Intron 0.28 TCGA-56-7823-01 19 55362708 55362708 T A KIR3DL2 Missense_Mutation p.M23K 0.90 deleterious(0.02) benign(0.002) TCGA-56-7823-01 19 56370059 56370059 G A NLRP4 Missense_Mutation p.G434S 0.41 deleterious(0.04) benign(0.029) TCGA-56-7823-01 19 56370060 56370060 G T NLRP4 Missense_Mutation p.G434V 0.40 deleterious(0) benign(0.265) TCGA-56-7823-01 19 56952494 56952494 T A ZNF667 3'UTR 0.45 TCGA-56-7823-01 19 6430101 6430101 G A SLC25A41 Silent p.F145F 0.31 TCGA-56-7823-01 19 6481720 6481720 C T DENND1C 5'UTR 0.52 TCGA-56-7823-01 19 8436189 8436189 C A ANGPTL4 Silent p.A274A 0.42 TCGA-56-7823-01 19 9009673 9009673 G T MUC16 Missense_Mutation p.T13018N 0.37 probably_damaging(0.961) TCGA-56-7823-01 1 119427727 119427727 A T TBX15 Nonsense_Mutation p.Y373* 0.66 TCGA-56-7823-01 1 150529464 150529464 C G ADAMTSL4 Missense_Mutation p.S600C 0.44 deleterious(0.01) possibly_damaging(0.904) TCGA-56-7823-01 1 152382606 152382606 G A CRNN Nonsense_Mutation p.Q318* 0.40 TCGA-56-7823-01 1 158435922 158435922 C G OR10K1 Missense_Mutation p.H191D 0.38 tolerated(1) benign(0.371) TCGA-56-7823-01 1 158670401 158670401 G A OR6K2 Silent p.F14F 0.37 TCGA-56-7823-01 1 158913704 158913704 G T PYHIN1 Missense_Mutation p.C376F 0.43 deleterious(0.01) probably_damaging(1) TCGA-56-7823-01 1 161475292 161475292 G A FCGR2A Missense_Mutation p.C12Y 0.45 tolerated(1) benign(0.039) TCGA-56-7823-01 1 16260939 16260939 C T SPEN Missense_Mutation p.T2735I 0.78 benign(0.05) TCGA-56-7823-01 1 175067655 175067655 T G TNN Silent p.G681G 0.37 TCGA-56-7823-01 1 177250647 177250647 G A BRINP2 Missense_Mutation p.G779S 0.44 tolerated(0.57) benign(0.054) TCGA-56-7823-01 1 197611939 197611939 C - DENND1B Frame_Shift_Del p.E192Nfs*8 0.23 TCGA-56-7823-01 1 205417475 205417476 - T MIR135B RNA 0.33 TCGA-56-7823-01 1 208205031 208205031 G A PLXNA2 Missense_Mutation p.P1710L 0.41 deleterious(0) probably_damaging(0.997) TCGA-56-7823-01 1 214491472 214491472 G A SMYD2 Silent p.E133E 0.43 TCGA-56-7823-01 1 220240670 220240670 T A BPNT1 Missense_Mutation p.I150F 0.28 deleterious(0) probably_damaging(0.95) TCGA-56-7823-01 1 228003535 228003550 AACCAGGGAATCTCCC - PRSS38 Frame_Shift_Del p.N40* 0.35 TCGA-56-7823-01 1 230895288 230895288 C A CAPN9 Missense_Mutation p.S105Y 0.47 deleterious(0) probably_damaging(0.998) TCGA-56-7823-01 1 241912900 241912900 C T WDR64 Missense_Mutation p.P539L 0.42 tolerated(0.13) benign(0.004) TCGA-56-7823-01 1 242451759 242451759 G T PLD5 Missense_Mutation p.Q134K 0.38 tolerated(0.29) benign(0.428) TCGA-56-7823-01 1 247014082 247014082 T A AHCTF1 Missense_Mutation p.R1751S 0.12 deleterious(0) possibly_damaging(0.53) TCGA-56-7823-01 1 247654842 247654842 C T OR2W5 RNA 0.36 TCGA-56-7823-01 1 248402711 248402711 G T OR2M4 Missense_Mutation p.A161S 0.40 tolerated(0.29) possibly_damaging(0.515) TCGA-56-7823-01 1 248458264 248458264 A G OR2T12 Missense_Mutation p.L206P 0.41 deleterious(0) probably_damaging(0.994) TCGA-56-7823-01 1 34033304 34033304 A G CSMD2 Missense_Mutation p.Y2734H 0.10 deleterious(0) probably_damaging(0.988) TCGA-56-7823-01 1 55271837 55271837 C T C1orf177 Silent p.V16V 1.00 TCGA-56-7823-01 1 65255159 65255159 T - RAVER2 Frame_Shift_Del p.L357Yfs*24 0.43 TCGA-56-7823-01 1 70505149 70505149 C T LRRC7 Silent p.H1176H 0.79 TCGA-56-7823-01 1 75699678 75699678 T A SLC44A5 Silent p.I282I 0.84 TCGA-56-7823-01 1 76282165 76282165 A C MSH4 Missense_Mutation p.Q308P 0.77 deleterious(0.02) possibly_damaging(0.514) TCGA-56-7823-01 20 18022242 18022242 G A OVOL2 Silent p.C149C 0.48 TCGA-56-7823-01 20 21687689 21687689 G T PAX1 Silent p.T300T 0.44 TCGA-56-7823-01 20 31609582 31609582 G T BPIFB2 Missense_Mutation p.A438S 0.17 tolerated(0.46) benign(0.009) TCGA-56-7823-01 20 33570266 33570266 G C MYH7B Missense_Mutation p.E220Q 0.33 benign(0.421) TCGA-56-7823-01 20 3726189 3726189 C G HSPA12B Missense_Mutation p.P168R 0.41 tolerated(0.26) benign(0.005) TCGA-56-7823-01 20 44596552 44596552 C A ZNF335 Missense_Mutation p.G212V 0.54 tolerated_low_confidence(0.07) benign(0.004) TCGA-56-7823-01 20 51871851 51871851 T A TSHZ2 Missense_Mutation p.S618R 0.42 deleterious(0.04) possibly_damaging(0.634) TCGA-56-7823-01 20 742300 742300 G T SLC52A3 Intron 0.54 TCGA-56-7823-01 20 9525071 9525071 C T PAK7 Missense_Mutation p.G605D 0.54 deleterious(0) probably_damaging(1) TCGA-56-7823-01 21 11038992 11038992 C T BAGE2 RNA 0.04 TCGA-56-7823-01 21 22881234 22881234 C A NCAM2 Missense_Mutation p.L714I 0.42 tolerated(0.14) possibly_damaging(0.619) TCGA-56-7823-01 21 22910292 22910292 G T NCAM2 3'UTR 0.50 TCGA-56-7823-01 21 43496236 43496236 T C UMODL1 Missense_Mutation p.W67R 0.91 deleterious(0) possibly_damaging(0.781) TCGA-56-7823-01 22 19709219 19709219 G T SEPT5 Missense_Mutation p.Q258H 0.40 deleterious(0.03) benign(0.037) TCGA-56-7823-01 22 21064206 21064206 T A PI4KA Nonsense_Mutation p.K2055* 0.42 TCGA-56-7823-01 22 31337466 31337466 G A MORC2 Missense_Mutation p.H198Y 0.39 deleterious(0.01) probably_damaging(0.98) TCGA-56-7823-01 22 33733659 33733659 G A LARGE Silent p.P420P 0.35 TCGA-56-7823-01 22 38219503 38219503 G A GALR3 Silent p.L30L 0.49 TCGA-56-7823-01 22 50191561 50191561 T A BRD1 Missense_Mutation p.R664W 0.60 deleterious(0) probably_damaging(0.999) TCGA-56-7823-01 2 141607827 141607827 T A LRP1B Missense_Mutation p.N1595Y 0.32 possibly_damaging(0.703) TCGA-56-7823-01 2 145156545 145156545 C A ZEB2 Missense_Mutation p.D737Y 0.51 deleterious(0) possibly_damaging(0.751) TCGA-56-7823-01 2 155566228 155566228 C T KCNJ3 Silent p.H272H 0.41 TCGA-56-7823-01 2 155711460 155711460 G T KCNJ3 Nonsense_Mutation p.E381* 0.45 TCGA-56-7823-01 2 157367401 157367401 A C GPD2 Missense_Mutation p.Q123P 0.34 deleterious(0) probably_damaging(0.988) TCGA-56-7823-01 2 166514416 166514416 T C CSRNP3 Silent p.H98H 0.33 TCGA-56-7823-01 2 166870387 166870387 C A SCN1A Missense_Mutation p.C1191F 0.38 tolerated(0.16) benign(0.084) TCGA-56-7823-01 2 177036596 177036596 C T HOXD3 Missense_Mutation p.S298L 0.25 deleterious(0.04) benign(0.006) TCGA-56-7823-01 2 179236961 179236961 G T OSBPL6 Splice_Site p.X490_splice 0.40 TCGA-56-7823-01 2 179438324 179438324 C G TTN Missense_Mutation p.V24179L 0.37 TCGA-56-7823-01 2 179458109 179458109 G C TTN Missense_Mutation p.P19609R 0.37 TCGA-56-7823-01 2 179587812 179587812 C A TTN Missense_Mutation p.A7308S 0.38 TCGA-56-7823-01 2 179639103 179639103 T A TTN Missense_Mutation p.E2296D 0.39 TCGA-56-7823-01 2 179642282 179642282 T C TTN Missense_Mutation p.K1504E 0.35 TCGA-56-7823-01 2 204599580 204599580 G A CD28 Missense_Mutation p.R203H 0.16 deleterious(0.01) probably_damaging(0.927) TCGA-56-7823-01 2 216226699 216226699 G T FN1 Missense_Mutation p.T2452K 0.68 tolerated(0.42) benign(0.127) TCGA-56-7823-01 2 227917065 227917065 C A COL4A4 Missense_Mutation p.G975V 0.70 unknown(0) TCGA-56-7823-01 2 240969528 240969528 G C OR6B2 Missense_Mutation p.L107V 0.60 deleterious(0) possibly_damaging(0.893) TCGA-56-7823-01 2 25463319 25463319 T A DNMT3A Missense_Mutation p.E725V 0.40 deleterious(0) possibly_damaging(0.865) TCGA-56-7823-01 2 27150234 27150234 G T DPYSL5 Missense_Mutation p.L178F 0.40 tolerated(1) benign(0.011) TCGA-56-7823-01 2 27303729 27303729 G A EMILIN1 Silent p.A140A 0.27 TCGA-56-7823-01 2 29092709 29092709 A G TRMT61B Silent p.T145T 0.09 TCGA-56-7823-01 2 49381539 49381539 G T FSHR Silent p.V6V 0.31 TCGA-56-7823-01 2 5833841 5833841 G A SOX11 Missense_Mutation p.A330T 0.32 tolerated(0.35) benign(0.019) TCGA-56-7823-01 2 89100736 89100736 C A ANKRD36BP2 RNA 0.20 TCGA-56-7823-01 2 90212020 90212020 A G IGKV3D-11 Missense_Mutation p.R38G 0.24 deleterious(0.01) benign(0.019) TCGA-56-7823-01 2 95518961 95518961 C T ANKRD20A8P RNA 0.42 TCGA-56-7823-01 2 96809739 96809739 G T DUSP2 Missense_Mutation p.H256Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-56-7823-01 3 113684061 113684061 C T ZDHHC23 3'Flank 0.36 TCGA-56-7823-01 3 114069458 114069458 C T ZBTB20 Missense_Mutation p.M489I 0.46 deleterious(0.02) benign(0.38) TCGA-56-7823-01 3 122662342 122662342 G T SEMA5B Silent p.A177A 0.50 TCGA-56-7823-01 3 132086748 132086748 C T ACPP 3'UTR 0.47 TCGA-56-7823-01 3 135913946 135913946 C A MSL2 Missense_Mutation p.V4L 0.39 deleterious(0.02) probably_damaging(0.956) TCGA-56-7823-01 3 138739053 138739053 G A PRR23B Nonsense_Mutation p.Q151* 0.36 TCGA-56-7823-01 3 14173115 14173115 G A TMEM43 Silent p.P111P 0.73 TCGA-56-7823-01 3 146159609 146159609 C A PLSCR2 Splice_Site p.X289_splice 0.50 TCGA-56-7823-01 3 150916296 150916296 C T GPR171 Missense_Mutation p.R293H 0.40 deleterious(0.02) benign(0.063) TCGA-56-7823-01 3 15686222 15686222 G C BTD Missense_Mutation p.A287P 0.78 deleterious(0) probably_damaging(0.98) TCGA-56-7823-01 3 159605594 159605594 A G IQCJ-SCHIP1 Missense_Mutation p.Q441R 0.20 deleterious(0.01) probably_damaging(0.974) TCGA-56-7823-01 3 169663960 169663960 C G RP11-379K17.4 RNA 0.21 TCGA-56-7823-01 3 170586165 170586166 CT A RPL22L1 Frame_Shift_Del p.K8Ifs*17 0.17 TCGA-56-7823-01 3 186334994 186334994 G T AHSG Missense_Mutation p.R143L 0.20 tolerated(0.68) benign(0.054) TCGA-56-7823-01 3 187444602 187444602 C T BCL6 Missense_Mutation p.S542N 0.04 deleterious(0.05) possibly_damaging(0.838) TCGA-56-7823-01 3 189675658 189675658 T A LEPREL1 3'UTR 0.55 TCGA-56-7823-01 3 193042662 193042662 G T ATP13A5 Silent p.G555G 0.30 TCGA-56-7823-01 3 193120492 193120492 T A ATP13A4 Missense_Mutation p.R1180S 0.27 tolerated(0.22) benign(0) TCGA-56-7823-01 3 195955073 195955073 C A SLC51A Missense_Mutation p.D150E 0.19 deleterious(0.02) possibly_damaging(0.771) TCGA-56-7823-01 3 38802776 38802776 C A SCN10A Missense_Mutation p.G264W 0.87 deleterious(0) probably_damaging(0.999) TCGA-56-7823-01 3 46245744 46245744 C T CCR1 Missense_Mutation p.A21T 0.40 tolerated(0.55) benign(0.004) TCGA-56-7823-01 3 52812411 52812411 G T ITIH1 Missense_Mutation p.R65L 0.82 deleterious(0) probably_damaging(1) TCGA-56-7823-01 3 64587728 64587728 G - ADAMTS9 Frame_Shift_Del p.L1304* 0.47 TCGA-56-7823-01 4 111409712 111409712 C A ENPEP Silent p.T220T 0.89 TCGA-56-7823-01 4 123336577 123336577 A G ADAD1 Missense_Mutation p.I431M 0.86 deleterious(0) possibly_damaging(0.649) TCGA-56-7823-01 4 144797959 144797959 C A GYPE Silent p.V62V 0.64 TCGA-56-7823-01 4 153245402 153245402 C A FBXW7 Missense_Mutation p.G597W 0.72 deleterious(0) probably_damaging(1) TCGA-56-7823-01 4 15707179 15707179 C T BST1 Missense_Mutation p.A77V 0.85 tolerated(0.64) benign(0.001) TCGA-56-7823-01 4 2831322 2831322 G A SH3BP2 Missense_Mutation p.G287D 0.79 deleterious_low_confidence(0.03) possibly_damaging(0.873) TCGA-56-7823-01 4 56230138 56230138 G A SRD5A3 Intron 0.94 TCGA-56-7823-01 5 118485704 118485704 T C DMXL1 Silent p.N1394N 0.78 TCGA-56-7823-01 5 140208787 140208787 C A PCDHA6 Missense_Mutation p.L371I 0.73 deleterious_low_confidence(0) probably_damaging(0.924) TCGA-56-7823-01 5 140215578 140215578 C T PCDHA7 Missense_Mutation p.A537V 0.84 deleterious_low_confidence(0.01) probably_damaging(0.923) TCGA-56-7823-01 5 140347201 140347201 C A PCDHAC2 Missense_Mutation p.P284T 0.88 tolerated(0.25) possibly_damaging(0.867) TCGA-56-7823-01 5 150666947 150666947 G T SLC36A3 Missense_Mutation p.R231S 0.85 deleterious(0) possibly_damaging(0.7) TCGA-56-7823-01 5 156810362 156810362 C G CYFIP2 Missense_Mutation p.P1042A 0.67 tolerated(0.42) benign(0.008) TCGA-56-7823-01 5 179247937 179247937 A G SQSTM1 Translation_Start_Site p.M1? 0.70 deleterious_low_confidence(0.01) possibly_damaging(0.625) TCGA-56-7823-01 5 24537695 24537695 T G CDH10 Missense_Mutation p.K107T 0.44 tolerated(0.66) benign(0.135) TCGA-56-7823-01 5 2748725 2748725 G A IRX2 Missense_Mutation p.P366L 0.48 deleterious(0.02) benign(0.028) TCGA-56-7823-01 5 34042966 34042966 C A C1QTNF3 Missense_Mutation p.V89L 0.42 tolerated_low_confidence(0.11) benign(0.001) TCGA-56-7823-01 5 41005672 41005672 C T MROH2B Silent p.S1275S 0.20 TCGA-56-7823-01 5 82789400 82789400 T C VCAN Missense_Mutation p.Y161H 0.86 deleterious(0) probably_damaging(1) TCGA-56-7823-01 5 82837731 82837731 G T VCAN Missense_Mutation p.G2970V 0.79 deleterious(0) probably_damaging(0.917) TCGA-56-7823-01 5 90052412 90052412 G T GPR98 Missense_Mutation p.D3908Y 0.89 probably_damaging(0.995) TCGA-56-7823-01 5 9122838 9122838 C G SEMA5A Missense_Mutation p.D571H 0.47 deleterious(0) probably_damaging(0.963) TCGA-56-7823-01 6 119500949 119500949 A T MAN1A1 3'UTR 0.33 TCGA-56-7823-01 6 129837513 129837513 G A LAMA2 3'UTR 0.47 TCGA-56-7823-01 6 131997908 131997908 T A ENPP3 Missense_Mutation p.L302Q 0.41 deleterious(0) probably_damaging(0.964) TCGA-56-7823-01 6 131997909 131997909 G T ENPP3 Silent p.L302L 0.40 TCGA-56-7823-01 6 132909867 132909867 A C TAAR5 Missense_Mutation p.L320R 0.22 deleterious(0) probably_damaging(0.929) TCGA-56-7823-01 6 160240334 160240334 C A PNLDC1 Silent p.I483I 0.43 TCGA-56-7823-01 6 160662565 160662565 G T SLC22A2 Missense_Mutation p.T481K 0.48 deleterious(0) probably_damaging(0.918) TCGA-56-7823-01 6 26452397 26452397 G C BTN3A3 Missense_Mutation p.E505Q 0.47 tolerated(0.22) probably_damaging(0.982) TCGA-56-7823-01 6 2749427 2749427 C A MYLK4 Silent p.V34V 0.34 TCGA-56-7823-01 6 27925564 27925564 T A OR2B6 Silent p.P182P 0.46 TCGA-56-7823-01 6 29342765 29342765 G A OR12D3 Silent p.H100H 0.50 TCGA-56-7823-01 6 29394795 29394795 G T OR11A1 Silent p.L208L 0.29 TCGA-56-7823-01 6 32726658 32726658 G A HLA-DQB2 Silent p.P205P 0.39 TCGA-56-7823-01 6 32847252 32847252 T C PPP1R2P1 RNA 0.23 TCGA-56-7823-01 6 39267272 39267272 C T KCNK17 Silent p.E310E 0.33 TCGA-56-7823-01 6 43395598 43395598 G T ABCC10 Intron 0.53 TCGA-56-7823-01 6 6174921 6174921 G T F13A1 Missense_Mutation p.R547S 0.41 tolerated(0.74) benign(0.007) TCGA-56-7823-01 6 70082319 70082319 G T BAI3 Missense_Mutation p.D1421Y 0.27 deleterious(0) possibly_damaging(0.781) TCGA-56-7823-01 6 70942434 70942434 G T COL9A1 Missense_Mutation p.D785E 0.35 benign(0.129) TCGA-56-7823-01 7 126173417 126173417 G T GRM8 Silent p.I673I 0.43 TCGA-56-7823-01 7 138270625 138270625 G A TRIM24 3'UTR 0.53 TCGA-56-7823-01 7 141734476 141734476 C A MGAM Silent p.A598A 0.53 TCGA-56-7823-01 7 141739942 141739942 C - MGAM Frame_Shift_Del p.P782Lfs*14 0.36 TCGA-56-7823-01 7 142749687 142749687 T C OR6V1 Silent p.L84L 0.48 TCGA-56-7823-01 7 142983728 142983728 G A TMEM139 Missense_Mutation p.E153K 0.61 tolerated(0.87) benign(0.003) TCGA-56-7823-01 7 143453459 143453459 C A CTAGE6 Missense_Mutation p.E431D 0.21 tolerated(0.06) benign(0.335) TCGA-56-7823-01 7 154863084 154863084 A G HTR5A Missense_Mutation p.N159D 0.36 tolerated(0.2) benign(0.356) TCGA-56-7823-01 7 2566012 2566012 A T LFNG Missense_Mutation p.Q319L 0.40 tolerated(0.09) benign(0.093) TCGA-56-7823-01 7 31736599 31736599 A G PPP1R17 Missense_Mutation p.I86V 0.60 tolerated_low_confidence(0.09) benign(0.105) TCGA-56-7823-01 7 37990026 37990026 G T EPDR1 3'UTR 0.25 TCGA-56-7823-01 7 38835116 38835116 G C VPS41 Silent p.L222L 0.44 TCGA-56-7823-01 7 57528672 57528672 T C ZNF716 Missense_Mutation p.F169L 0.30 tolerated(0.16) benign(0.024) TCGA-56-7823-01 7 70853381 70853381 G C WBSCR17 Missense_Mutation p.D195H 0.47 deleterious(0.02) probably_damaging(0.971) TCGA-56-7823-01 7 75143997 75143997 T A Y_RNA 5'Flank 0.38 TCGA-56-7823-01 7 77200432 77200432 A T PTPN12 Missense_Mutation p.K46M 0.53 deleterious(0) probably_damaging(0.977) TCGA-56-7823-01 7 87037359 87037359 C T ABCB4 Silent p.G1091G 0.35 TCGA-56-7823-01 7 87138716 87138716 G T ABCB1 Missense_Mutation p.L1122M 0.35 deleterious(0) probably_damaging(0.998) TCGA-56-7823-01 7 87138717 87138717 G A ABCB1 Silent p.I1121I 0.34 TCGA-56-7823-01 7 87179587 87179587 A T ABCB1 Missense_Mutation p.V417E 0.41 deleterious(0) probably_damaging(0.991) TCGA-56-7823-01 7 87912198 87912198 G A STEAP4 Missense_Mutation p.P248S 0.39 deleterious(0.02) probably_damaging(0.913) TCGA-56-7823-01 7 91924418 91924418 G T ANKIB1 Missense_Mutation p.E42D 0.45 tolerated(0.26) benign(0.338) TCGA-56-7823-01 7 92826887 92826887 G T HEPACAM2 Nonsense_Mutation p.S350* 0.44 TCGA-56-7823-01 7 94047838 94047838 G C COL1A2 Missense_Mutation p.G667R 0.42 unknown(0) TCGA-56-7823-01 7 94881394 94881394 G T PPP1R9A Nonsense_Mutation p.E873* 0.31 TCGA-56-7823-01 8 100523562 100523562 C T VPS13B Silent p.A1510A 0.35 TCGA-56-7823-01 8 113277813 113277813 C A CSMD3 Missense_Mutation p.S3172I 0.45 deleterious(0.01) benign(0.008) TCGA-56-7823-01 8 113347559 113347559 G T CSMD3 Missense_Mutation p.H2388Q 0.32 tolerated(0.19) possibly_damaging(0.885) TCGA-56-7823-01 8 113364646 113364646 T C CSMD3 Missense_Mutation p.Q2085R 0.44 deleterious(0.01) possibly_damaging(0.771) TCGA-56-7823-01 8 113420582 113420582 G C CSMD3 Missense_Mutation p.P1857R 0.38 tolerated(0.52) possibly_damaging(0.698) TCGA-56-7823-01 8 22035110 22035110 G T BMP1 Intron 0.41 TCGA-56-7823-01 8 23712053 23712053 G T STC1 5'UTR 0.41 TCGA-56-7823-01 8 24188842 24188842 T C ADAM28 Splice_Site p.X427_splice 0.42 TCGA-56-7823-01 8 25902301 25902301 C A EBF2 Silent p.S25S 0.40 TCGA-56-7823-01 8 36780020 36780020 A G KCNU1 Missense_Mutation p.N870S 0.41 deleterious(0) probably_damaging(0.999) TCGA-56-7823-01 8 37978637 37978637 G A ASH2L Missense_Mutation p.E379K 0.35 tolerated(0.49) benign(0.004) TCGA-56-7823-01 8 39785418 39785418 C A IDO1 Nonsense_Mutation p.S309* 0.50 TCGA-56-7823-01 8 41543726 41543726 T A ANK1 Missense_Mutation p.E1486V 0.44 deleterious(0) benign(0.275) TCGA-56-7823-01 8 56015068 56015068 G A XKR4 Missense_Mutation p.G7E 0.39 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-56-7823-01 8 70488444 70488444 G T SULF1 Missense_Mutation p.A138S 0.39 deleterious(0.01) possibly_damaging(0.861) TCGA-56-7823-01 8 75737663 75737663 G T PI15 Missense_Mutation p.R60L 0.43 deleterious(0) probably_damaging(0.995) TCGA-56-7823-01 8 75737752 75737752 T C PI15 Missense_Mutation p.Y90H 0.51 tolerated(0.11) probably_damaging(0.999) TCGA-56-7823-01 8 77618852 77618852 G A ZFHX4 Silent p.Q843Q 0.46 TCGA-56-7823-01 8 86048063 86048063 A T LRRCC1 Nonsense_Mutation p.K732* 0.41 TCGA-56-7823-01 8 87450835 87450835 G A WWP1 Missense_Mutation p.D591N 0.18 deleterious(0.03) probably_damaging(0.96) TCGA-56-7823-01 8 88885862 88885862 C T DCAF4L2 Missense_Mutation p.R113Q 0.44 tolerated(0.3) benign(0.002) TCGA-56-7823-01 8 88885957 88885957 G T DCAF4L2 Silent p.T81T 0.47 TCGA-56-7823-01 8 97296335 97296335 A T PTDSS1 Splice_Site p.X91_splice 0.39 TCGA-56-7823-01 9 104048425 104048425 A G LPPR1 Missense_Mutation p.T98A 0.44 tolerated(1) benign(0.169) TCGA-56-7823-01 9 105765505 105765505 G C CYLC2 Missense_Mutation p.R47T 0.39 deleterious(0.01) probably_damaging(0.977) TCGA-56-7823-01 9 107546627 107546627 T C ABCA1 Missense_Mutation p.Q2252R 0.53 tolerated(0.16) benign(0) TCGA-56-7823-01 9 125652707 125652708 - G RC3H2 Frame_Shift_Ins p.R156Pfs*98 0.24 TCGA-56-7823-01 9 125681730 125681730 C G ZBTB26 Missense_Mutation p.D162H 0.36 deleterious(0.05) possibly_damaging(0.832) TCGA-56-7823-01 9 131513068 131513068 G C ZER1 Missense_Mutation p.L396V 0.21 tolerated(1) benign(0.084) TCGA-56-7823-01 9 15177772 15177772 C A TTC39B Missense_Mutation p.K588N 0.74 tolerated(0.36) possibly_damaging(0.67) TCGA-56-7823-01 9 19380237 19380237 C A RPS6 5'UTR 0.76 TCGA-56-7823-01 9 21217164 21217164 G C IFNA16 Missense_Mutation p.I47M 0.81 deleterious(0.04) possibly_damaging(0.782) TCGA-56-7823-01 9 40716205 40716205 G C FAM74A3 RNA 0.24 TCGA-56-7823-01 9 84607755 84607755 G C SPATA31D1 Missense_Mutation p.E790D 0.47 deleterious(0.05) benign(0.155) TCGA-56-7823-01 9 91934703 91934703 C A SECISBP2 Missense_Mutation p.P58Q 0.34 deleterious(0) possibly_damaging(0.774) TCGA-56-7823-01 9 91934704 91934704 A G SECISBP2 Silent p.P58P 0.34 TCGA-56-7823-01 X 104463693 104463693 T C TEX13A Missense_Mutation p.T395A 0.78 tolerated(0.38) possibly_damaging(0.874) TCGA-56-7823-01 X 111195397 111195397 C G TRPC5 Missense_Mutation p.E84D 0.76 tolerated(0.1) probably_damaging(0.983) TCGA-56-7823-01 X 119425165 119425165 C A TMEM255A Missense_Mutation p.G99C 0.78 deleterious(0) probably_damaging(1) TCGA-56-7823-01 X 125686550 125686550 G T DCAF12L1 Silent p.P14P 0.81 TCGA-56-7823-01 X 125686551 125686551 G T DCAF12L1 Missense_Mutation p.P14H 0.81 deleterious(0.01) benign(0.443) TCGA-56-7823-01 X 135574388 135574388 C A BRS3 Silent p.R352R 0.79 TCGA-56-7823-01 X 135631071 135631071 C A VGLL1 Missense_Mutation p.R180S 0.75 tolerated(0.42) benign(0.024) TCGA-56-7823-01 X 135761760 135761760 C T ARHGEF6 Silent p.P588P 0.82 TCGA-56-7823-01 X 138880464 138880464 T A ATP11C Missense_Mutation p.Q278H 0.85 deleterious(0.03) benign(0.434) TCGA-56-7823-01 X 144905494 144905494 G C SLITRK2 Missense_Mutation p.Q517H 0.83 tolerated(0.68) probably_damaging(0.972) TCGA-56-7823-01 X 144905906 144905906 A G SLITRK2 Missense_Mutation p.R655G 0.85 tolerated(0.35) benign(0) TCGA-56-7823-01 X 14550373 14550373 C G GLRA2 Missense_Mutation p.C27W 0.71 deleterious_low_confidence(0) possibly_damaging(0.571) TCGA-56-7823-01 X 14599313 14599313 A G GLRA2 Silent p.R93R 0.72 TCGA-56-7823-01 X 152826211 152826211 T C ATP2B3 Missense_Mutation p.F973L 0.80 deleterious(0.02) probably_damaging(0.999) TCGA-56-7823-01 X 30577921 30577921 G C CXorf21 Nonsense_Mutation p.Y184* 0.77 TCGA-56-7823-01 X 31090125 31090125 G T FTHL17 5'UTR 0.67 TCGA-56-7823-01 X 31165556 31165556 T C DMD Missense_Mutation p.M3545V 1.00 benign(0.043) TCGA-56-7823-01 X 49093607 49093607 A G CCDC22 Silent p.V35V 0.70 TCGA-56-7823-01 X 49957439 49957439 G T AKAP4 Missense_Mutation p.P642H 0.65 tolerated(0.3) probably_damaging(0.909) TCGA-56-7823-01 X 96139970 96139970 C T RPA4 Missense_Mutation p.H221Y 0.80 tolerated(0.69) benign(0) TCGA-56-8082-01 10 111872604 111872604 C T ADD3 Silent p.L89L 0.65 TCGA-56-8082-01 10 17875775 17875775 T C MRC1L1 Missense_Mutation p.C247R 0.31 probably_damaging(1) TCGA-56-8082-01 10 29747246 29747246 G A SVIL Missense_Mutation p.T2192M 0.21 tolerated(0.06) probably_damaging(0.982) TCGA-56-8082-01 10 37421167 37421167 G T ANKRD30A Splice_Site p.X115_splice 0.30 TCGA-56-8082-01 10 37421168 37421168 G T ANKRD30A Missense_Mutation p.A115S 0.28 tolerated(0.66) possibly_damaging(0.822) TCGA-56-8082-01 10 37506770 37506770 T C ANKRD30A Silent p.D1021D 0.47 TCGA-56-8082-01 10 5948048 5948048 A T FBXO18 Missense_Mutation p.Q120L 0.23 tolerated(0.28) benign(0.02) TCGA-56-8082-01 10 70066526 70066526 G C PBLD Missense_Mutation p.L26V 0.52 deleterious(0.04) possibly_damaging(0.856) TCGA-56-8082-01 10 8055761 8055761 C T TAF3 Missense_Mutation p.P879L 0.32 deleterious(0) benign(0) TCGA-56-8082-01 10 81057386 81057386 G A ZMIZ1 Missense_Mutation p.G477E 0.60 benign(0.144) TCGA-56-8082-01 11 108811063 108811063 G T DDX10 Missense_Mutation p.R847S 0.56 deleterious(0.04) benign(0) TCGA-56-8082-01 11 1103191 1103191 C A MUC2 Silent p.P2647P 0.35 TCGA-56-8082-01 11 113267976 113267976 C A ANKK1 Nonsense_Mutation p.S290* 0.25 TCGA-56-8082-01 11 117023216 117023216 T A PAFAH1B2 Missense_Mutation p.I18N 0.20 tolerated(0.05) benign(0.034) TCGA-56-8082-01 11 117387343 117387343 T C DSCAML1 Missense_Mutation p.D601G 0.41 deleterious(0.01) benign(0.356) TCGA-56-8082-01 11 123909313 123909313 G T OR10G7 Silent p.T132T 0.08 TCGA-56-8082-01 11 125764060 125764060 C G PUS3 Missense_Mutation p.A356P 0.13 deleterious(0.01) benign(0.027) TCGA-56-8082-01 11 133402200 133402200 C G OPCML Missense_Mutation p.W7S 0.62 deleterious(0.04) benign(0.001) TCGA-56-8082-01 11 133791073 133791073 G C IGSF9B Silent p.L849L 0.38 TCGA-56-8082-01 11 1651240 1651240 G A KRTAP5-5 Missense_Mutation p.G57E 0.39 unknown(0) TCGA-56-8082-01 11 4471383 4471383 C A OR52K2 Missense_Mutation p.P272T 0.32 tolerated(0.41) possibly_damaging(0.861) TCGA-56-8082-01 11 47840940 47840940 C T NUP160 Missense_Mutation p.D450N 0.09 tolerated(0.3) benign(0.104) TCGA-56-8082-01 11 47840956 47840956 C G NUP160 Missense_Mutation p.E444D 0.08 tolerated(0.44) benign(0.159) TCGA-56-8082-01 11 47840992 47840992 C G NUP160 Missense_Mutation p.W432C 0.08 deleterious(0) probably_damaging(0.998) TCGA-56-8082-01 11 56057700 56057700 A G OR8H1 Missense_Mutation p.V280A 0.34 deleterious(0.01) possibly_damaging(0.816) TCGA-56-8082-01 11 56128189 56128189 C T OR8J1 Missense_Mutation p.A156V 0.29 deleterious(0) possibly_damaging(0.864) TCGA-56-8082-01 11 62358998 62358998 C A TUT1 Missense_Mutation p.W25L 0.52 tolerated_low_confidence(0.08) benign(0.402) TCGA-56-8082-01 11 65266481 65266481 C T MALAT1 RNA 0.26 TCGA-56-8082-01 11 67223098 67223098 G A CABP4 Silent p.G68G 0.44 TCGA-56-8082-01 11 74899203 74899203 A G SLCO2B1 Missense_Mutation p.Q332R 0.32 tolerated(0.27) benign(0.026) TCGA-56-8082-01 11 85436617 85436617 C T SYTL2 Missense_Mutation p.D295N 0.25 tolerated(0.34) benign(0.053) TCGA-56-8082-01 12 107075793 107075793 A T RFX4 Missense_Mutation p.Q122L 0.33 tolerated(0.54) benign(0.012) TCGA-56-8082-01 12 111748089 111748089 G T CUX2 Silent p.A501A 0.25 TCGA-56-8082-01 12 123983141 123983141 G A RILPL1 Nonsense_Mutation p.R251* 0.45 TCGA-56-8082-01 12 124092006 124092006 C T DDX55 Nonsense_Mutation p.R92* 0.07 TCGA-56-8082-01 12 129822205 129822205 A T TMEM132D Missense_Mutation p.L425M 0.32 deleterious(0.01) possibly_damaging(0.622) TCGA-56-8082-01 12 130833936 130833936 A C PIWIL1 Missense_Mutation p.Q296P 0.35 tolerated(0.26) benign(0.003) TCGA-56-8082-01 12 21331921 21331921 A G SLCO1B1 Missense_Mutation p.K232E 0.05 deleterious(0) possibly_damaging(0.904) TCGA-56-8082-01 12 49743247 49743247 T A DNAJC22 Missense_Mutation p.Y198N 0.41 deleterious(0.01) possibly_damaging(0.646) TCGA-56-8082-01 12 53170475 53170475 C A KRT76 Splice_Site p.X200_splice 0.28 TCGA-56-8082-01 12 53242625 53242625 G A KRT78 Silent p.F30F 0.38 TCGA-56-8082-01 12 54367098 54367098 C A HOXC11 Silent p.R25R 0.33 TCGA-56-8082-01 12 56845065 56845065 T C MIP Nonstop_Mutation p.*264Wext*19 0.42 TCGA-56-8082-01 12 62918933 62918933 G C MON2 Silent p.L393L 0.38 TCGA-56-8082-01 12 6443353 6443353 G A TNFRSF1A Missense_Mutation p.H33Y 0.35 tolerated(0.48) benign(0.02) TCGA-56-8082-01 12 78515819 78515819 G A NAV3 Silent p.A1283A 0.31 TCGA-56-8082-01 12 81655792 81655792 T C PPFIA2 Missense_Mutation p.D1248G 0.15 deleterious_low_confidence(0) probably_damaging(0.944) TCGA-56-8082-01 12 81839388 81839388 C A PPFIA2 Missense_Mutation p.V173F 0.07 deleterious(0) probably_damaging(0.993) TCGA-56-8082-01 12 8245642 8245642 A G NECAP1 Missense_Mutation p.S223G 0.32 tolerated(0.13) benign(0.01) TCGA-56-8082-01 12 95927496 95927496 T C USP44 Silent p.P179P 0.39 TCGA-56-8082-01 13 114792894 114792894 G A RASA3 Missense_Mutation p.P192S 0.43 deleterious(0) probably_damaging(0.91) TCGA-56-8082-01 13 46725181 46725181 G T LCP1 Missense_Mutation p.L258M 0.76 tolerated(0.07) benign(0.132) TCGA-56-8082-01 14 20404093 20404093 A G OR4K1 Missense_Mutation p.K90E 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-56-8082-01 14 22521252 22521252 T C TRAV21 Silent p.R91R 0.75 TCGA-56-8082-01 14 44975224 44975224 C A FSCB Nonsense_Mutation p.E323* 0.81 TCGA-56-8082-01 14 58965662 58965662 A C KIAA0586 Missense_Mutation p.Q1437H 0.64 tolerated(0.09) benign(0.013) TCGA-56-8082-01 14 71455353 71455353 G A PCNX Missense_Mutation p.R794Q 0.04 tolerated(0.13) probably_damaging(0.996) TCGA-56-8082-01 14 76905957 76905957 G T ESRRB Silent p.S87S 0.27 TCGA-56-8082-01 15 22383068 22383068 T C OR4N4 Missense_Mutation p.M199T 0.24 deleterious(0.02) benign(0.352) TCGA-56-8082-01 15 30008888 30008888 C T TJP1 Missense_Mutation p.A1377T 0.28 tolerated_low_confidence(0.27) benign(0.002) TCGA-56-8082-01 15 41803382 41803382 C - LTK Frame_Shift_Del p.G326Efs*48 0.47 TCGA-56-8082-01 15 54630588 54630588 G C UNC13C Silent p.A1538A 0.19 TCGA-56-8082-01 15 55652009 55652009 A G CCPG1 Silent p.D654D 0.27 TCGA-56-8082-01 15 55933340 55933340 T C PRTG Missense_Mutation p.D703G 0.36 tolerated(0.44) probably_damaging(0.96) TCGA-56-8082-01 15 60907205 60907205 C A RORA Intron 0.37 TCGA-56-8082-01 15 73879899 73879899 G A NPTN Silent p.S224S 0.14 TCGA-56-8082-01 15 73996319 73996319 C G CD276 Silent p.A351A 0.36 TCGA-56-8082-01 15 74425724 74425724 C G ISLR2 Missense_Mutation p.A210G 0.27 deleterious(0) benign(0.174) TCGA-56-8082-01 15 74425731 74425731 C G ISLR2 Silent p.A212A 0.26 TCGA-56-8082-01 16 29997656 29997656 G A TAOK2 Missense_Mutation p.R688Q 0.62 tolerated(1) benign(0.015) TCGA-56-8082-01 16 30904220 30904220 C T BCL7C Missense_Mutation p.R74H 0.08 tolerated(0.14) probably_damaging(0.964) TCGA-56-8082-01 16 32077431 32077431 G T IGHV3OR16-9 Missense_Mutation p.G16W 0.27 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-56-8082-01 16 56862949 56862949 G T NUP93 Silent p.G285G 0.54 TCGA-56-8082-01 17 10346656 10346656 C A MYH4 3'UTR 0.67 TCGA-56-8082-01 17 10428074 10428074 C T MYH2 Silent p.K1657K 0.76 TCGA-56-8082-01 17 26800689 26800689 T A SLC13A2 5'UTR 0.86 TCGA-56-8082-01 17 34236467 34236467 G C AC015849.16 RNA 0.18 TCGA-56-8082-01 17 38252768 38252768 C T NR1D1 Missense_Mutation p.V178I 0.33 tolerated(0.12) benign(0.003) TCGA-56-8082-01 17 45914561 45914561 G A LRRC46 3'UTR 0.25 TCGA-56-8082-01 17 6604360 6604360 C A SLC13A5 Missense_Mutation p.A268S 0.73 tolerated(0.7) benign(0.028) TCGA-56-8082-01 17 7258498 7258498 C T TMEM95 5'UTR 0.56 TCGA-56-8082-01 17 7578373 7578390 TCGCTATCTGAGCAGCGC - TP53 In_Frame_Del p.E180_S185del 0.57 TCGA-56-8082-01 17 79202857 79202857 C A ENTHD2 Silent p.V483V 0.38 TCGA-56-8082-01 17 8076925 8076925 T C TMEM107 3'Flank 0.79 TCGA-56-8082-01 18 11851957 11851957 G T CHMP1B Silent p.V149V 0.43 TCGA-56-8082-01 18 48581242 48581242 C G SMAD4 Missense_Mutation p.I182M 0.38 tolerated(0.22) benign(0.071) TCGA-56-8082-01 18 9522220 9522220 G A RALBP1 Missense_Mutation p.E256K 0.53 tolerated(0.27) benign(0.005) TCGA-56-8082-01 19 10597261 10597261 C T KEAP1 3'UTR 0.67 TCGA-56-8082-01 19 10897272 10897272 G T DNM2 Silent p.P294P 0.54 TCGA-56-8082-01 19 1257293 1257293 C T MIDN 3'UTR 0.62 TCGA-56-8082-01 19 15302456 15302456 G A NOTCH3 Missense_Mutation p.T272M 0.20 deleterious(0.02) probably_damaging(0.978) TCGA-56-8082-01 19 19339014 19339014 A T NCAN Missense_Mutation p.Q862L 0.63 tolerated(0.32) benign(0.001) TCGA-56-8082-01 19 29699005 29699005 C T UQCRFS1 Missense_Mutation p.R92H 0.17 deleterious(0) probably_damaging(0.984) TCGA-56-8082-01 19 36212475 36212475 G C KMT2B Missense_Mutation p.Q742H 0.56 probably_damaging(0.948) TCGA-56-8082-01 19 36212476 36212476 G T KMT2B Missense_Mutation p.A743S 0.58 benign(0.091) TCGA-56-8082-01 19 3833709 3833709 G A ZFR2 Missense_Mutation p.A111V 0.80 tolerated(0.14) benign(0.052) TCGA-56-8082-01 19 38934872 38934872 C A RYR1 Missense_Mutation p.L170I 0.56 probably_damaging(0.998) TCGA-56-8082-01 19 39068677 39068677 G T RYR1 Silent p.G4764G 0.72 TCGA-56-8082-01 19 44223071 44223071 C A IRGC Missense_Mutation p.P121T 0.50 tolerated(0.08) possibly_damaging(0.741) TCGA-56-8082-01 19 48714922 48714922 T A CARD8 3'UTR 0.50 TCGA-56-8082-01 19 51582162 51582162 C G KLK14 Silent p.P187P 0.57 TCGA-56-8082-01 19 56206634 56206634 A T EPN1 Missense_Mutation p.Y634F 0.58 tolerated(0.39) benign(0.12) TCGA-56-8082-01 19 57035743 57035743 T C ZNF471 Missense_Mutation p.Y103H 0.70 tolerated(0.45) benign(0.367) TCGA-56-8082-01 19 7573279 7573279 C G C19orf45 Missense_Mutation p.P494R 0.25 deleterious(0.03) possibly_damaging(0.904) TCGA-56-8082-01 19 8993398 8993398 C T MUC16 Silent p.L13897L 0.59 TCGA-56-8082-01 1 100750796 100750796 A T RTCA Missense_Mutation p.D284V 0.82 tolerated(0.06) benign(0.141) TCGA-56-8082-01 1 103481279 103481279 C G COL11A1 Missense_Mutation p.G478A 0.76 probably_damaging(1) TCGA-56-8082-01 1 111434974 111434974 G T CD53 Missense_Mutation p.G24V 0.77 deleterious(0) probably_damaging(0.998) TCGA-56-8082-01 1 152079923 152079923 G T TCHH Missense_Mutation p.P1924T 0.41 possibly_damaging(0.641) TCGA-56-8082-01 1 156262986 156262986 C T C1orf85 Missense_Mutation p.G357D 0.39 deleterious(0) probably_damaging(1) TCGA-56-8082-01 1 157740445 157740445 G A FCRL2 Missense_Mutation p.L22F 0.38 deleterious(0) probably_damaging(0.997) TCGA-56-8082-01 1 158615343 158615343 G A SPTA1 Missense_Mutation p.S1313L 0.38 deleterious(0.04) benign(0.038) TCGA-56-8082-01 1 167663508 167663508 C T RCSD1 Missense_Mutation p.P148L 0.37 deleterious(0) probably_damaging(1) TCGA-56-8082-01 1 19199311 19199311 C G ALDH4A1 3'UTR 0.73 TCGA-56-8082-01 1 205273596 205273596 C A NUAK2 Missense_Mutation p.R290L 0.15 deleterious(0.01) benign(0.093) TCGA-56-8082-01 1 206317526 206317526 G A CTSE 5'UTR 0.33 TCGA-56-8082-01 1 211093016 211093016 C G KCNH1 Missense_Mutation p.E476D 0.35 deleterious(0.04) probably_damaging(1) TCGA-56-8082-01 1 223971865 223971865 C A TP53BP2 Missense_Mutation p.W1105C 0.39 deleterious(0) probably_damaging(1) TCGA-56-8082-01 1 228210564 228210564 A G WNT3A Missense_Mutation p.T90A 0.30 deleterious(0) probably_damaging(0.942) TCGA-56-8082-01 1 230410221 230410221 A T GALNT2 Nonsense_Mutation p.K491* 0.33 TCGA-56-8082-01 1 230916396 230916397 CC - CAPN9 Frame_Shift_Del p.H476Pfs*4 0.20 TCGA-56-8082-01 1 247920874 247920874 A T OR1C1 Missense_Mutation p.S279T 0.40 tolerated(1) benign(0.004) TCGA-56-8082-01 1 32256658 32256658 C T SPOCD1 Missense_Mutation p.G1066E 0.59 tolerated(0.29) benign(0.029) TCGA-56-8082-01 1 35223724 35223724 C T GJB5 Nonsense_Mutation p.R265* 0.12 TCGA-56-8082-01 1 43220609 43220609 T A LEPRE1 Nonsense_Mutation p.K426* 0.72 TCGA-56-8082-01 1 51937395 51937395 G A EPS15 Silent p.A60A 0.17 TCGA-56-8082-01 1 86905906 86905906 G C CLCA2 Missense_Mutation p.G427R 0.65 tolerated(0.11) benign(0.409) TCGA-56-8082-01 20 1471926 1471926 G T SIRPB2 Missense_Mutation p.P27H 0.27 deleterious(0.01) benign(0.322) TCGA-56-8082-01 20 16253888 16253888 A G KIF16B 3'UTR 0.33 TCGA-56-8082-01 20 18608865 18608865 T G DTD1 Silent p.S155S 0.33 TCGA-56-8082-01 20 18608866 18608866 G T DTD1 Missense_Mutation p.D156Y 0.34 deleterious(0) possibly_damaging(0.812) TCGA-56-8082-01 20 29623212 29623212 C A FRG1B Missense_Mutation p.H8Q 0.02 tolerated(0.25) benign(0.046) TCGA-56-8082-01 20 30070203 30070203 G A REM1 Silent p.L179L 0.47 TCGA-56-8082-01 20 32267763 32267763 C G E2F1 Missense_Mutation p.E124Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-56-8082-01 20 33334684 33334684 C T NCOA6 Silent p.P947P 0.06 TCGA-56-8082-01 20 377049 377049 G A TRIB3 Silent p.S264S 0.38 TCGA-56-8082-01 20 62198932 62198932 G A HELZ2 Silent p.G593G 0.18 TCGA-56-8082-01 20 7875798 7875798 G T HAO1 Silent p.L265L 0.38 TCGA-56-8082-01 21 11049556 11049556 T A BAGE2 RNA 0.15 TCGA-56-8082-01 21 44272388 44272388 C T WDR4 Missense_Mutation p.R341H 0.17 tolerated(0.26) benign(0.002) TCGA-56-8082-01 21 44483132 44483132 C T CBS Silent p.Q295Q 0.35 TCGA-56-8082-01 21 44589359 44589380 GTCCCTCTTCCGCACCGTGCTG - CRYAA Frame_Shift_Del p.S51Tfs*20 0.42 TCGA-56-8082-01 22 22989469 22989469 G A GGTLC2 Silent p.S107S 0.43 TCGA-56-8082-01 22 32929825 32929825 G T SYN3 Missense_Mutation p.A350D 0.30 deleterious(0) unknown(0) TCGA-56-8082-01 22 37903851 37903851 C A CARD10 Missense_Mutation p.E392D 0.19 deleterious(0.01) benign(0.12) TCGA-56-8082-01 22 39908453 39908453 C T MIEF1 Missense_Mutation p.P180L 0.05 deleterious(0) possibly_damaging(0.669) TCGA-56-8082-01 2 113161583 113161583 T C RGPD8 Silent p.V412V 0.32 TCGA-56-8082-01 2 163250921 163250921 T G KCNH7 Silent p.S896S 0.20 TCGA-56-8082-01 2 166848373 166848373 G T SCN1A Missense_Mutation p.D1804E 0.31 deleterious(0) probably_damaging(0.998) TCGA-56-8082-01 2 167141014 167141014 A G SCN9A Silent p.N641N 0.39 TCGA-56-8082-01 2 172926348 172926348 C G METAP1D Missense_Mutation p.P55A 0.34 deleterious(0.04) possibly_damaging(0.788) TCGA-56-8082-01 2 176947024 176947024 G A EVX2 Missense_Mutation p.A194V 0.15 deleterious(0) probably_damaging(0.999) TCGA-56-8082-01 2 178982803 178982803 T C RBM45 Missense_Mutation p.C149R 0.38 deleterious(0) possibly_damaging(0.857) TCGA-56-8082-01 2 179613656 179613656 C A TTN Intron 0.33 TCGA-56-8082-01 2 179659866 179659866 G A TTN Missense_Mutation p.P343L 0.49 TCGA-56-8082-01 2 182780240 182780240 G T SSFA2 Nonsense_Mutation p.E625* 0.35 TCGA-56-8082-01 2 185800759 185800759 C A ZNF804A Silent p.I212I 0.50 TCGA-56-8082-01 2 189876356 189876356 A T COL3A1 Missense_Mutation p.K1419N 0.31 unknown(0) TCGA-56-8082-01 2 207454233 207454233 C A ADAM23 Missense_Mutation p.S651R 0.38 deleterious(0.01) probably_damaging(0.932) TCGA-56-8082-01 2 210894609 210894609 T C KANSL1L Missense_Mutation p.Q730R 0.26 tolerated(0.16) benign(0.287) TCGA-56-8082-01 2 220286073 220286073 G A DES Silent p.L345L 0.46 TCGA-56-8082-01 2 223386494 223386494 G A SGPP2 Missense_Mutation p.M129I 0.11 deleterious(0) probably_damaging(0.983) TCGA-56-8082-01 2 224462648 224462648 C T SCG2 Silent p.S451S 0.30 TCGA-56-8082-01 2 228564221 228564221 C A SLC19A3 Silent p.V70V 0.27 TCGA-56-8082-01 2 231775318 231775318 G C GPR55 Missense_Mutation p.F120L 0.37 deleterious(0.03) benign(0.033) TCGA-56-8082-01 2 26257454 26257454 C T RAB10 5'UTR 0.24 TCGA-56-8082-01 2 36704049 36704049 G A CRIM1 Missense_Mutation p.V337I 0.04 tolerated(0.39) probably_damaging(0.972) TCGA-56-8082-01 2 44502849 44502849 T C SLC3A1 Missense_Mutation p.F59L 0.38 tolerated(0.67) benign(0.001) TCGA-56-8082-01 2 71742826 71742826 C A DYSF Missense_Mutation p.A278E 0.38 deleterious(0.04) possibly_damaging(0.731) TCGA-56-8082-01 2 74782473 74782473 G A DOK1 Missense_Mutation p.G85S 0.43 tolerated(0.14) possibly_damaging(0.778) TCGA-56-8082-01 2 90060836 90060836 G T IGKV6D-21 Missense_Mutation p.Q61H 0.35 deleterious(0.01) benign(0.13) TCGA-56-8082-01 2 91843467 91843467 G A AC027612.6 RNA 0.14 TCGA-56-8082-01 3 100413825 100413825 A G GPR128 Missense_Mutation p.N792D 0.33 tolerated(0.12) benign(0) TCGA-56-8082-01 3 122990417 122990417 T A SEC22A Missense_Mutation p.L258M 0.20 deleterious(0.02) possibly_damaging(0.714) TCGA-56-8082-01 3 126733575 126733575 C T PLXNA1 Silent p.D926D 0.12 TCGA-56-8082-01 3 127411100 127411100 C T MGLL Missense_Mutation p.E295K 0.43 deleterious(0) possibly_damaging(0.902) TCGA-56-8082-01 3 130368376 130368376 C G COL6A6 Missense_Mutation p.S1901R 0.31 tolerated(0.15) possibly_damaging(0.53) TCGA-56-8082-01 3 140401438 140401438 T C TRIM42 Missense_Mutation p.L159P 0.12 deleterious(0) probably_damaging(0.999) TCGA-56-8082-01 3 147108972 147108972 G A ZIC4 Silent p.D300D 0.37 TCGA-56-8082-01 3 148583124 148583124 T G CPA3 Missense_Mutation p.I10M 0.41 deleterious(0.01) possibly_damaging(0.494) TCGA-56-8082-01 3 160783280 160783280 G A PPM1L Missense_Mutation p.G222R 0.12 deleterious(0) probably_damaging(0.993) TCGA-56-8082-01 3 189612067 189612080 CTCCACGAATTCTC - TP63 Frame_Shift_Del p.H608Pfs*20 0.39 TCGA-56-8082-01 3 194080425 194080425 C A LRRC15 Missense_Mutation p.V456L 0.42 tolerated(0.44) benign(0) TCGA-56-8082-01 3 46450042 46450042 A G CCRL2 Missense_Mutation p.T170A 0.65 tolerated(0.28) benign(0.026) TCGA-56-8082-01 3 72971485 72971485 C T GXYLT2 Missense_Mutation p.P200L 0.66 deleterious(0) probably_damaging(1) TCGA-56-8082-01 3 88205217 88205217 T - C3orf38 Frame_Shift_Del p.L141Qfs*20 0.22 TCGA-56-8082-01 4 111464006 111464006 G T ENPEP Missense_Mutation p.W636L 0.34 deleterious(0.02) probably_damaging(0.982) TCGA-56-8082-01 4 114280041 114280041 G A ANK2 Missense_Mutation p.E3423K 0.34 possibly_damaging(0.622) TCGA-56-8082-01 4 123117928 123117928 G C KIAA1109 Missense_Mutation p.L397F 0.28 probably_damaging(0.997) TCGA-56-8082-01 4 123252617 123252617 C A KIAA1109 Silent p.R3796R 0.27 TCGA-56-8082-01 4 123856910 123856910 G C SPATA5 Missense_Mutation p.G397R 0.22 deleterious(0) probably_damaging(1) TCGA-56-8082-01 4 123856985 123856985 G C SPATA5 Missense_Mutation p.E422Q 0.17 deleterious(0.03) possibly_damaging(0.866) TCGA-56-8082-01 4 157999270 157999270 G T GLRB Missense_Mutation p.G32W 0.65 deleterious_low_confidence(0.01) benign(0.319) TCGA-56-8082-01 4 164271987 164271987 G T NPY5R Missense_Mutation p.G188C 0.62 tolerated(0.19) probably_damaging(0.926) TCGA-56-8082-01 4 1803632 1803632 C T FGFR3 Silent p.D270D 0.33 TCGA-56-8082-01 4 20852178 20852178 T A KCNIP4 Missense_Mutation p.R92S 0.25 deleterious(0) benign(0.179) TCGA-56-8082-01 4 38831159 38831159 C G TLR6 Splice_Site 0.29 TCGA-56-8082-01 4 46312201 46312201 T A GABRA2 Missense_Mutation p.K183I 0.32 tolerated(0.07) probably_damaging(0.934) TCGA-56-8082-01 4 84185432 84185432 C A COQ2 Missense_Mutation p.G396W 0.33 deleterious(0) probably_damaging(1) TCGA-56-8082-01 5 112178772 112178772 C T APC Missense_Mutation p.S2494F 0.31 possibly_damaging(0.905) TCGA-56-8082-01 5 121488703 121488703 G A ZNF474 Missense_Mutation p.A340T 0.06 tolerated(0.27) benign(0.025) TCGA-56-8082-01 5 1279423 1279423 C G TERT Missense_Mutation p.E705Q 0.36 tolerated(0.74) benign(0.002) TCGA-56-8082-01 5 131290040 131290040 C A ACSL6 Missense_Mutation p.D686Y 0.11 deleterious(0) probably_damaging(0.914) TCGA-56-8082-01 5 132197738 132197738 C A GDF9 Missense_Mutation p.G303V 0.62 tolerated(0.1) benign(0.03) TCGA-56-8082-01 5 140182521 140182521 T C PCDHA3 Missense_Mutation p.L580P 0.54 tolerated_low_confidence(0.1) benign(0.093) TCGA-56-8082-01 5 140580852 140580852 C T PCDHB11 Missense_Mutation p.S502F 0.63 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-56-8082-01 5 140712624 140712624 A G PCDHGA1 Silent p.L791L 0.57 TCGA-56-8082-01 5 141307857 141307857 T C KIAA0141 Missense_Mutation p.C136R 0.57 tolerated(0.63) benign(0.001) TCGA-56-8082-01 5 142513543 142513543 C T ARHGAP26 Silent p.T570T 0.65 TCGA-56-8082-01 5 150090841 150090841 C A DCTN4 Missense_Mutation p.C425F 0.79 deleterious(0.03) benign(0.218) TCGA-56-8082-01 5 150920158 150920158 G T FAT2 Missense_Mutation p.D3003E 0.12 probably_damaging(1) TCGA-56-8082-01 5 169507212 169507212 C A DOCK2 Missense_Mutation p.H1738N 0.56 tolerated_low_confidence(0.6) benign(0.101) TCGA-56-8082-01 5 176308745 176308745 G T HK3 Missense_Mutation p.R781S 0.66 tolerated(0.58) benign(0.015) TCGA-56-8082-01 5 26915850 26915850 C A CDH9 Silent p.R137R 0.24 TCGA-56-8082-01 5 26915851 26915851 C G CDH9 Missense_Mutation p.R137P 0.24 deleterious(0.03) possibly_damaging(0.834) TCGA-56-8082-01 6 107854764 107854764 A T SOBP Missense_Mutation p.S175C 0.27 deleterious(0) probably_damaging(0.999) TCGA-56-8082-01 6 129612787 129612787 C T LAMA2 Silent p.F926F 0.30 TCGA-56-8082-01 6 129774204 129774204 C G LAMA2 Nonsense_Mutation p.Y2167* 0.19 TCGA-56-8082-01 6 151857488 151857488 G A CCDC170 Silent p.T31T 0.24 TCGA-56-8082-01 6 170594755 170594755 T C DLL1 Missense_Mutation p.D255G 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-56-8082-01 6 29627145 29627145 G T MOG Silent p.G46G 0.28 TCGA-56-8082-01 6 31829183 31829183 C A NEU1 Missense_Mutation p.V133F 0.32 tolerated(0.72) benign(0.002) TCGA-56-8082-01 6 31919704 31919704 A T CFB Missense_Mutation p.Q1233L 0.33 tolerated(0.69) benign(0.016) TCGA-56-8082-01 6 4131001 4131001 C T ECI2 Silent p.K104K 0.38 TCGA-56-8082-01 6 51908498 51908498 G T PKHD1 Missense_Mutation p.H916N 0.05 tolerated(0.73) benign(0.002) TCGA-56-8082-01 6 55443773 55443773 T A HMGCLL1 Silent p.S27S 0.82 TCGA-56-8082-01 6 55638870 55638870 G A BMP5 Missense_Mutation p.S335F 0.67 tolerated(0.06) benign(0.057) TCGA-56-8082-01 6 56473047 56473047 G A DST Intron 0.09 TCGA-56-8082-01 6 63990267 63990267 A G LGSN Missense_Mutation p.C397R 0.23 deleterious(0) benign(0.361) TCGA-56-8082-01 6 69349161 69349161 C A BAI3 Nonsense_Mutation p.C198* 0.28 TCGA-56-8082-01 6 90418320 90418320 C T MDN1 Missense_Mutation p.R2598Q 0.29 probably_damaging(0.996) TCGA-56-8082-01 6 97729112 97729112 C T MMS22L Splice_Site p.X97_splice 0.42 TCGA-56-8082-01 7 101459301 101459301 A G CUX1 5'UTR 0.37 TCGA-56-8082-01 7 112723890 112723890 G T GPR85 Missense_Mutation p.T296N 0.33 deleterious(0.01) benign(0.063) TCGA-56-8082-01 7 127231362 127231362 G T ARF5 3'UTR 0.23 TCGA-56-8082-01 7 129948183 129948183 G T CPA4 Nonsense_Mutation p.G247* 0.41 TCGA-56-8082-01 7 131194181 131194181 T C PODXL Silent p.S322S 0.44 TCGA-56-8082-01 7 138968698 138968698 A T UBN2 Missense_Mutation p.K1016M 0.36 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-56-8082-01 7 148876586 148876586 G T ZNF398 Missense_Mutation p.C541F 0.28 deleterious(0) probably_damaging(1) TCGA-56-8082-01 7 149481030 149481030 C A SSPO RNA 0.39 TCGA-56-8082-01 7 150784104 150784104 C A AGAP3 Silent p.R92R 0.38 TCGA-56-8082-01 7 151962229 151962229 T A KMT2C Missense_Mutation p.T360S 0.10 probably_damaging(0.995) TCGA-56-8082-01 7 158534258 158534258 G A ESYT2 Silent p.P735P 0.18 TCGA-56-8082-01 7 87144619 87144619 G T ABCB1 Silent p.G1070G 0.41 TCGA-56-8082-01 7 94937322 94937323 - T PON1 Frame_Shift_Ins p.Y234Vfs*6 0.23 TCGA-56-8082-01 7 99332692 99332692 C T CYP3A7 Missense_Mutation p.V9M 0.09 tolerated(0.93) benign(0.001) TCGA-56-8082-01 7 99950679 99950679 G T PILRB 5'UTR 0.34 TCGA-56-8082-01 8 105264078 105264078 C A RIMS2 3'Flank 0.32 TCGA-56-8082-01 8 109796551 109796551 G A TMEM74 Silent p.L259L 0.46 TCGA-56-8082-01 8 110416815 110416815 G A PKHD1L1 Missense_Mutation p.R469K 0.36 tolerated(0.29) benign(0.186) TCGA-56-8082-01 8 117875375 117875375 G A RAD21 Missense_Mutation p.R90W 0.04 deleterious(0) possibly_damaging(0.591) TCGA-56-8082-01 8 144895054 144895054 G A SCRIB Silent p.G240G 0.11 TCGA-56-8082-01 8 26492400 26492400 C T DPYSL2 Silent p.A265A 0.64 TCGA-56-8082-01 8 41553894 41553894 C A ANK1 Missense_Mutation p.A1024S 0.35 deleterious(0) benign(0.301) TCGA-56-8082-01 8 72970015 72970015 A G TRPA1 Missense_Mutation p.S344P 0.29 deleterious(0) probably_damaging(0.969) TCGA-56-8082-01 8 77767959 77767959 G A ZFHX4 Silent p.T2934T 0.44 TCGA-56-8082-01 8 88249340 88249340 G T CNBD1 Missense_Mutation p.M257I 0.54 tolerated(0.28) benign(0.005) TCGA-56-8082-01 9 101980778 101980778 G A ALG2 Missense_Mutation p.S230F 0.42 deleterious(0) probably_damaging(0.999) TCGA-56-8082-01 9 114500579 114500579 C T C9orf84 Silent p.T402T 0.29 TCGA-56-8082-01 9 125143996 125143996 G T PTGS1 Silent p.R244R 0.50 TCGA-56-8082-01 9 138516252 138516252 G - GLT6D1 Frame_Shift_Del p.N175Tfs*56 0.36 TCGA-56-8082-01 9 138714117 138714117 C T CAMSAP1 Missense_Mutation p.S797N 0.44 deleterious(0) probably_damaging(0.978) TCGA-56-8082-01 9 43627151 43627151 G T SPATA31A6 Silent p.S512S 0.30 TCGA-56-8082-01 9 70918830 70918830 T C FOXD4L3 Silent p.D321D 0.26 TCGA-56-8082-01 X 100086564 100086564 C A CSTF2 Missense_Mutation p.T317N 0.36 deleterious(0.02) benign(0.188) TCGA-56-8082-01 X 108867974 108867974 G T KCNE1L Missense_Mutation p.D92E 0.33 tolerated(0.31) benign(0.003) TCGA-56-8082-01 X 111097047 111097047 C T TRPC5 Silent p.Q396Q 0.43 TCGA-56-8082-01 X 117722427 117722427 G T DOCK11 Missense_Mutation p.A678S 0.26 tolerated(0.34) benign(0.07) TCGA-56-8082-01 X 118921440 118921440 C A RPL39 Intron 0.36 TCGA-56-8082-01 X 120181662 120181662 C A GLUD2 Missense_Mutation p.Q42K 0.48 tolerated(0.79) benign(0.002) TCGA-56-8082-01 X 128873181 128873181 G T XPNPEP2 5'UTR 0.38 TCGA-56-8082-01 X 1314927 1314927 G C CRLF2 Missense_Mutation p.S245C 0.62 tolerated(0.19) benign(0.016) TCGA-56-8082-01 X 134494329 134494329 G A ZNF449 Silent p.L295L 0.35 TCGA-56-8082-01 X 146295107 146295107 C A MIR513A1 RNA 0.33 TCGA-56-8082-01 X 149013193 149013193 C A MAGEA8 Silent p.T49T 0.35 TCGA-56-8082-01 X 150909336 150909336 A T CNGA2 Missense_Mutation p.M149L 0.43 tolerated(1) benign(0) TCGA-56-8082-01 X 152482226 152482226 T C MAGEA1 Missense_Mutation p.Y262C 0.38 deleterious(0) possibly_damaging(0.652) TCGA-56-8082-01 X 153247989 153247989 A G TMEM187 Missense_Mutation p.H159R 0.40 deleterious(0.04) possibly_damaging(0.629) TCGA-56-8082-01 X 153627725 153627725 C G RPL10 Missense_Mutation p.R24G 0.25 deleterious(0) probably_damaging(0.929) TCGA-56-8082-01 X 153627726 153627726 G A RPL10 Missense_Mutation p.R24Q 0.26 deleterious(0.03) benign(0.123) TCGA-56-8082-01 X 153698057 153698057 G A PLXNA3 Silent p.L1575L 0.25 TCGA-56-8082-01 X 153698334 153698334 A C PLXNA3 Missense_Mutation p.T1604P 0.17 tolerated(0.1) benign(0.006) TCGA-56-8082-01 X 18919692 18919692 G C PHKA2 Missense_Mutation p.P980A 0.57 tolerated(0.07) benign(0.188) TCGA-56-8082-01 X 54263380 54263380 A T WNK3 Nonsense_Mutation p.L1540* 0.35 TCGA-56-8082-01 X 54781485 54781485 A T ITIH6 Missense_Mutation p.M1056K 0.33 deleterious(0.02) benign(0.288) TCGA-56-8082-01 X 55029488 55029488 G T APEX2 Missense_Mutation p.M172I 0.40 deleterious(0.03) benign(0.008) TCGA-56-8082-01 X 55044077 55044077 G T ALAS2 Missense_Mutation p.A282E 0.36 tolerated(0.09) possibly_damaging(0.817) TCGA-56-8082-01 X 70465315 70465315 C T ZMYM3 Missense_Mutation p.A961T 0.32 tolerated(0.24) benign(0.004) TCGA-56-8082-01 X 73962648 73962648 C T KIAA2022 Missense_Mutation p.A582T 0.34 deleterious(0) possibly_damaging(0.865) TCGA-56-8083-01 10 126683184 126683185 - G CTBP2 Frame_Shift_Ins p.Y752Lfs*38 0.28 TCGA-56-8083-01 10 134660766 134660766 G - TTC40 Frame_Shift_Del p.T2005Qfs*24 0.28 TCGA-56-8083-01 10 37422846 37422846 C T ANKRD30A Missense_Mutation p.T151I 0.41 deleterious(0) probably_damaging(0.961) TCGA-56-8083-01 10 55568808 55568808 C A PCDH15 Missense_Mutation p.V602F 0.45 deleterious_low_confidence(0.01) unknown(0) TCGA-56-8083-01 10 69881727 69881727 T A MYPN Missense_Mutation p.C178S 0.50 tolerated(0.15) benign(0.404) TCGA-56-8083-01 10 70506929 70506929 G T CCAR1 Missense_Mutation p.G177V 0.45 deleterious(0) probably_damaging(0.999) TCGA-56-8083-01 10 76781836 76781836 G A KAT6B Silent p.E1073E 0.16 TCGA-56-8083-01 10 88260256 88260256 T A WAPAL Silent p.S248S 0.47 TCGA-56-8083-01 11 115102167 115102167 C A CADM1 Silent p.A156A 0.87 TCGA-56-8083-01 11 118344558 118344558 A G KMT2A Missense_Mutation p.K895R 0.08 probably_damaging(0.952) TCGA-56-8083-01 11 123777366 123777366 C A OR8D4 Silent p.V76V 0.90 TCGA-56-8083-01 11 1263134 1263134 C A MUC5B Missense_Mutation p.T1675K 0.32 unknown(0) TCGA-56-8083-01 11 24518746 24518746 A G LUZP2 5'UTR 0.43 TCGA-56-8083-01 11 26621157 26621157 C A ANO3 Missense_Mutation p.Q578K 0.36 tolerated(0.38) benign(0.006) TCGA-56-8083-01 11 3735227 3735227 T C NUP98 Splice_Site p.X800_splice 0.44 TCGA-56-8083-01 11 397410 397410 C G PKP3 Nonsense_Mutation p.Y303* 0.20 TCGA-56-8083-01 11 45971771 45971771 T G PHF21A Missense_Mutation p.H377P 0.49 tolerated(0.23) possibly_damaging(0.623) TCGA-56-8083-01 11 4903945 4903945 G T OR51T1 Missense_Mutation p.R299S 0.43 tolerated(0.22) benign(0.034) TCGA-56-8083-01 11 5664453 5664453 A T TRIM34 Silent p.P327P 0.28 TCGA-56-8083-01 11 61624929 61624929 G T FADS2 Missense_Mutation p.G270V 0.40 tolerated(0.07) benign(0.119) TCGA-56-8083-01 11 6291508 6291508 G T CCKBR Silent p.V198V 0.41 TCGA-56-8083-01 11 6478090 6478090 C T TRIM3 Missense_Mutation p.R289Q 0.45 tolerated(1) benign(0.005) TCGA-56-8083-01 11 65347613 65347613 G A EHBP1L1 Missense_Mutation p.G125E 0.46 deleterious(0) probably_damaging(0.999) TCGA-56-8083-01 11 66638268 66638268 C A PC Silent p.R243R 0.45 TCGA-56-8083-01 11 68822811 68822811 C G TPCN2 Silent p.L140L 0.05 TCGA-56-8083-01 11 70118293 70118293 G A PPFIA1 Silent p.V5V 0.08 TCGA-56-8083-01 11 70118375 70118375 G A PPFIA1 Missense_Mutation p.D33N 0.07 deleterious(0.01) probably_damaging(0.963) TCGA-56-8083-01 11 70118387 70118387 G C PPFIA1 Missense_Mutation p.E37Q 0.08 deleterious(0) probably_damaging(1) TCGA-56-8083-01 11 71942193 71942193 G A INPPL1 Missense_Mutation p.R486H 0.10 deleterious(0) probably_damaging(0.99) TCGA-56-8083-01 11 7647122 7647122 G A PPFIBP2 Missense_Mutation p.D276N 0.43 deleterious(0.04) probably_damaging(0.995) TCGA-56-8083-01 11 77301266 77301266 T C AQP11 Missense_Mutation p.W77R 0.74 tolerated(0.16) probably_damaging(0.998) TCGA-56-8083-01 12 100451939 100451939 C G UHRF1BP1L Missense_Mutation p.G1039A 0.40 tolerated(0.19) benign(0.002) TCGA-56-8083-01 12 109609672 109609672 G C ACACB Missense_Mutation p.A330P 0.32 deleterious(0) probably_damaging(0.988) TCGA-56-8083-01 12 123344350 123344350 C A HIP1R Nonsense_Mutation p.S813* 0.41 TCGA-56-8083-01 12 55945918 55945918 T C OR6C4 Missense_Mutation p.V303A 0.37 tolerated_low_confidence(0.28) benign(0.014) TCGA-56-8083-01 12 69119569 69119569 C T NUP107 Silent p.D523D 0.25 TCGA-56-8083-01 12 70933764 70933764 C T PTPRB Missense_Mutation p.R1878H 0.33 deleterious(0.04) benign(0.099) TCGA-56-8083-01 12 70983910 70983910 G A PTPRB Silent p.I628I 0.40 TCGA-56-8083-01 12 71077908 71077908 T A PTPRR Missense_Mutation p.E499V 0.48 deleterious(0.01) benign(0.011) TCGA-56-8083-01 12 78400513 78400513 C T NAV3 Missense_Mutation p.P399S 0.46 tolerated_low_confidence(0.5) benign(0.1) TCGA-56-8083-01 12 98993742 98993742 G A SLC25A3 Silent p.K218K 0.29 TCGA-56-8083-01 13 32900675 32900675 G T BRCA2 Missense_Mutation p.A186S 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-56-8083-01 13 45147342 45147342 C A TSC22D1 Missense_Mutation p.V957L 0.39 deleterious(0.03) probably_damaging(0.912) TCGA-56-8083-01 13 53420724 53420724 A G PCDH8 Silent p.N616N 0.36 TCGA-56-8083-01 13 70314644 70314644 C A KLHL1 Missense_Mutation p.D562Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-56-8083-01 14 34145570 34145570 C A NPAS3 Missense_Mutation p.Q238K 0.52 tolerated(0.3) benign(0.107) TCGA-56-8083-01 14 35592898 35592898 T C KIAA0391 Silent p.A149A 0.46 TCGA-56-8083-01 14 35592899 35592899 G T KIAA0391 Missense_Mutation p.G150C 0.46 deleterious(0.02) benign(0.299) TCGA-56-8083-01 14 45654501 45654501 G T FANCM Nonsense_Mutation p.E1533* 0.22 TCGA-56-8083-01 14 47504221 47504221 G T MDGA2 Silent p.I604I 0.39 TCGA-56-8083-01 14 61186914 61186915 CT - SIX4 Frame_Shift_Del p.Q371Rfs*8 0.26 TCGA-56-8083-01 14 70926073 70926073 C T ADAM21 Silent p.C619C 0.42 TCGA-56-8083-01 14 73140954 73140954 G A DPF3 Missense_Mutation p.R289C 0.57 deleterious(0.03) probably_damaging(0.942) TCGA-56-8083-01 15 25207348 25207349 - A SNURF Frame_Shift_Ins p.N35Kfs*24 0.28 TCGA-56-8083-01 15 29346072 29346072 T A APBA2 5'UTR 0.30 TCGA-56-8083-01 15 54305492 54305492 T A UNC13C Nonsense_Mutation p.L131* 0.46 TCGA-56-8083-01 15 77473476 77473476 G A PEAK1 Missense_Mutation p.R265C 0.46 deleterious(0) probably_damaging(0.999) TCGA-56-8083-01 15 90039606 90039606 T A RHCG Missense_Mutation p.Y57F 0.45 deleterious(0.05) probably_damaging(0.948) TCGA-56-8083-01 16 3644520 3644520 G C SLX4 Missense_Mutation p.D698E 0.34 deleterious(0) probably_damaging(1) TCGA-56-8083-01 16 49670776 49670776 C G ZNF423 Missense_Mutation p.A763P 0.32 tolerated(0.08) benign(0.066) TCGA-56-8083-01 16 61761000 61761000 G T CDH8 Missense_Mutation p.Q512K 0.32 tolerated(0.06) benign(0.031) TCGA-56-8083-01 16 70934937 70934937 A T HYDIN Silent p.P3006P 0.25 TCGA-56-8083-01 16 70975567 70975567 G T HYDIN Silent p.A2275A 0.26 TCGA-56-8083-01 16 81010013 81010013 G A CMC2 Missense_Mutation p.P73S 0.37 tolerated(0.64) benign(0.001) TCGA-56-8083-01 16 81030968 81030968 G A CMC2 Missense_Mutation p.T11I 0.34 deleterious(0) possibly_damaging(0.807) TCGA-56-8083-01 16 81075058 81075058 C T ATMIN Missense_Mutation p.P145L 0.39 deleterious(0.01) probably_damaging(1) TCGA-56-8083-01 16 81399075 81399075 G A GAN Silent p.E498E 0.37 TCGA-56-8083-01 17 30965824 30965824 T C MYO1D Silent p.R875R 0.46 TCGA-56-8083-01 17 37008920 37008920 C T RPL23 Missense_Mutation p.A55T 0.47 deleterious(0) probably_damaging(0.921) TCGA-56-8083-01 17 3967799 3967799 C G ZZEF1 Missense_Mutation p.R1525P 0.87 deleterious_low_confidence(0) possibly_damaging(0.749) TCGA-56-8083-01 17 40956270 40956270 C T CNTD1 Silent p.I91I 0.42 TCGA-56-8083-01 17 43474105 43474105 C T ARHGAP27 Missense_Mutation p.R327Q 0.13 deleterious(0) possibly_damaging(0.775) TCGA-56-8083-01 17 57139956 57139956 C A TRIM37 Missense_Mutation p.G305V 0.44 deleterious(0) probably_damaging(0.999) TCGA-56-8083-01 17 61489036 61489036 G T TANC2 Missense_Mutation p.D1178Y 0.39 deleterious(0) probably_damaging(0.999) TCGA-56-8083-01 17 72522136 72522136 C A CD300LB Nonsense_Mutation p.G78* 0.39 TCGA-56-8083-01 17 73945400 73945400 T - ACOX1 Frame_Shift_Del p.K542Nfs*14 0.29 TCGA-56-8083-01 17 7577036 7577036 G - TP53 Frame_Shift_Del p.P301Qfs*44 0.46 TCGA-56-8083-01 17 76533499 76533499 G T DNAH17 Missense_Mutation p.P914Q 0.31 probably_damaging(0.999) TCGA-56-8083-01 18 29790577 29790577 T G MEP1B Missense_Mutation p.L345V 0.48 tolerated(0.08) benign(0.011) TCGA-56-8083-01 18 334814 334814 G T COLEC12 Missense_Mutation p.P582T 0.27 tolerated(0.34) unknown(0) TCGA-56-8083-01 18 55218026 55218026 T A FECH Missense_Mutation p.K403M 0.35 tolerated(0.07) possibly_damaging(0.71) TCGA-56-8083-01 18 59855215 59855215 G C KIAA1468 Silent p.G159G 0.24 TCGA-56-8083-01 19 1271557 1271557 G T CIRBP Silent p.G119G 0.68 TCGA-56-8083-01 19 12986852 12986852 C T DNASE2 Silent p.Q345Q 0.04 TCGA-56-8083-01 19 19655010 19655010 G C CILP2 Missense_Mutation p.K552N 0.40 deleterious(0) possibly_damaging(0.735) TCGA-56-8083-01 19 22836204 22836204 G A ZNF492 Translation_Start_Site p.M1? 0.34 deleterious(0.04) benign(0.107) TCGA-56-8083-01 19 35512700 35512700 G T GRAMD1A Missense_Mutation p.R562L 0.65 tolerated(0.08) probably_damaging(0.989) TCGA-56-8083-01 19 41086724 41086724 G A SHKBP1 Silent p.A242A 0.59 TCGA-56-8083-01 19 4550849 4550849 G T SEMA6B Silent p.I361I 0.77 TCGA-56-8083-01 19 46388567 46388567 C A IRF2BP1 Missense_Mutation p.G156C 0.28 deleterious(0.01) probably_damaging(0.979) TCGA-56-8083-01 19 52660662 52660662 G A ZNF836 Nonsense_Mutation p.Q92* 0.25 TCGA-56-8083-01 19 53770787 53770787 C A VN1R4 Missense_Mutation p.L44F 0.64 deleterious(0.03) benign(0.114) TCGA-56-8083-01 19 55451005 55451005 G T NLRP7 Missense_Mutation p.F394L 0.58 tolerated(0.08) benign(0.224) TCGA-56-8083-01 19 56466582 56466582 C - NLRP8 Frame_Shift_Del p.N386Kfs*21 0.18 TCGA-56-8083-01 19 58018126 58018126 C A ZNF773 Nonsense_Mutation p.C221* 0.34 TCGA-56-8083-01 1 103354477 103354477 T A COL11A1 Splice_Site p.X1489_splice 0.33 TCGA-56-8083-01 1 103400037 103400037 A G COL11A1 Missense_Mutation p.F1190L 0.46 unknown(0) TCGA-56-8083-01 1 103488406 103488406 G T COL11A1 Silent p.G379G 0.32 TCGA-56-8083-01 1 110655617 110655617 C A UBL4B Missense_Mutation p.A154E 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.687) TCGA-56-8083-01 1 116206436 116206436 G C VANGL1 Missense_Mutation p.G120A 0.54 tolerated(0.42) benign(0.061) TCGA-56-8083-01 1 117559918 117559918 A T CD101 Missense_Mutation p.S479C 0.46 deleterious(0.02) probably_damaging(0.928) TCGA-56-8083-01 1 144903102 144903102 C - PDE4DIP Frame_Shift_Del p.R930Sfs*80 0.32 TCGA-56-8083-01 1 154987847 154987847 G T ZBTB7B Missense_Mutation p.E271D 0.55 tolerated(0.24) benign(0.016) TCGA-56-8083-01 1 157650869 157650869 T A FCRL3 Missense_Mutation p.Q620L 0.37 tolerated(0.19) benign(0.012) TCGA-56-8083-01 1 158582735 158582735 G T SPTA1 Missense_Mutation p.L2336M 0.45 deleterious(0) possibly_damaging(0.653) TCGA-56-8083-01 1 169279315 169279315 C A NME7 Silent p.T94T 0.19 TCGA-56-8083-01 1 169701768 169701768 G T SELE Missense_Mutation p.L137I 0.23 deleterious(0) probably_damaging(0.992) TCGA-56-8083-01 1 175375371 175375371 G C TNR Missense_Mutation p.C160W 0.36 deleterious(0) probably_damaging(0.999) TCGA-56-8083-01 1 192547498 192547498 T G RGS1 Missense_Mutation p.S143A 0.49 tolerated(0.91) benign(0.004) TCGA-56-8083-01 1 20990980 20990980 C A KIF17 3'UTR 0.55 TCGA-56-8083-01 1 20998599 20998599 G T KIF17 Missense_Mutation p.R852S 0.40 deleterious(0) probably_damaging(0.999) TCGA-56-8083-01 1 247039473 247039473 C T AHCTF1 Missense_Mutation p.R994H 0.37 tolerated(0.23) benign(0.031) TCGA-56-8083-01 1 248343812 248343812 C T OR2M2 Silent p.A175A 0.24 TCGA-56-8083-01 1 34276438 34276438 C T CSMD2 Missense_Mutation p.G411D 0.40 deleterious(0.04) probably_damaging(1) TCGA-56-8083-01 1 35579081 35579081 T C ZMYM1 Silent p.N550N 0.43 TCGA-56-8083-01 1 7796455 7796455 G A CAMTA1 Missense_Mutation p.V1040M 0.47 deleterious(0.02) benign(0.025) TCGA-56-8083-01 20 33875485 33875485 G A FAM83C Missense_Mutation p.P366L 0.35 tolerated_low_confidence(0.1) possibly_damaging(0.801) TCGA-56-8083-01 20 36841551 36841551 G T KIAA1755 Missense_Mutation p.Q1166K 0.38 tolerated(0.2) benign(0.001) TCGA-56-8083-01 20 42355306 42355306 G T GTSF1L Missense_Mutation p.P10H 0.34 deleterious(0) probably_damaging(1) TCGA-56-8083-01 20 4776591 4776591 C G RASSF2 Missense_Mutation p.E53Q 0.46 deleterious(0) possibly_damaging(0.849) TCGA-56-8083-01 20 54978663 54978663 G T CSTF1 Silent p.L392L 0.42 TCGA-56-8083-01 20 61938909 61938909 G A COL20A1 Nonsense_Mutation p.W188* 0.36 TCGA-56-8083-01 21 47809255 47809255 G T PCNT Missense_Mutation p.R1250L 0.37 benign(0.01) TCGA-56-8083-01 22 23029501 23029501 C A IGLV3-25 Missense_Mutation p.Q35K 0.25 deleterious(0.04) possibly_damaging(0.793) TCGA-56-8083-01 22 42524338 42524338 G T CYP2D6 Silent p.V227V 0.63 TCGA-56-8083-01 22 42607463 42607463 G A TCF20 Silent p.R1283R 0.26 TCGA-56-8083-01 2 128380858 128380858 T G MYO7B Missense_Mutation p.S1217A 0.38 deleterious(0) probably_damaging(0.992) TCGA-56-8083-01 2 163302596 163302596 A G KCNH7 Missense_Mutation p.W496R 0.41 deleterious(0) probably_damaging(1) TCGA-56-8083-01 2 167163524 167163524 A G SCN9A Missense_Mutation p.Y107H 0.40 deleterious(0.02) probably_damaging(0.993) TCGA-56-8083-01 2 170366364 170366364 C A KLHL41 Missense_Mutation p.L26I 0.45 deleterious(0.01) probably_damaging(0.984) TCGA-56-8083-01 2 178977284 178977284 C T RBM45 Missense_Mutation p.A4V 0.37 deleterious_low_confidence(0.02) benign(0.007) TCGA-56-8083-01 2 179425807 179425807 T C TTN Missense_Mutation p.D28351G 0.44 TCGA-56-8083-01 2 179517222 179517222 C T TTN Silent p.A13030A 0.42 TCGA-56-8083-01 2 179737028 179737028 G T CCDC141 Missense_Mutation p.N637K 0.41 deleterious(0.03) benign(0.02) TCGA-56-8083-01 2 180011133 180011133 C G SESTD1 Missense_Mutation p.Q211H 0.32 deleterious(0.04) benign(0.273) TCGA-56-8083-01 2 207425855 207425855 G C ADAM23 Silent p.R391R 0.56 TCGA-56-8083-01 2 220342781 220342781 C A SPEG Missense_Mutation p.H1661N 0.40 probably_damaging(0.977) TCGA-56-8083-01 2 241737061 241737061 C T KIF1A Intron 0.44 TCGA-56-8083-01 2 32093357 32093357 G A MEMO1 3'UTR 0.83 TCGA-56-8083-01 2 3691100 3691100 T A COLEC11 Missense_Mutation p.L146Q 0.89 deleterious(0) probably_damaging(0.985) TCGA-56-8083-01 3 119236143 119236143 G T TIMMDC1 Nonsense_Mutation p.E230* 0.42 TCGA-56-8083-01 3 119501681 119501681 C A NR1I2 Missense_Mutation p.A26D 0.42 tolerated_low_confidence(0.21) benign(0.003) TCGA-56-8083-01 3 122631101 122631101 G T SEMA5B Silent p.T992T 0.35 TCGA-56-8083-01 3 124436210 124436210 G T KALRN Missense_Mutation p.R1101M 0.42 deleterious(0) probably_damaging(0.999) TCGA-56-8083-01 3 12475489 12475489 G T PPARG Nonsense_Mutation p.E455* 0.85 TCGA-56-8083-01 3 127642506 127642506 G T KBTBD12 Missense_Mutation p.W201L 0.29 deleterious(0) probably_damaging(1) TCGA-56-8083-01 3 150645721 150645721 T - CLRN1 3'Flank 0.16 TCGA-56-8083-01 3 15468043 15468043 A C METTL6 5'UTR 0.75 TCGA-56-8083-01 3 166958696 166958696 C T ZBBX Missense_Mutation p.R802K 0.18 tolerated(1) benign(0.006) TCGA-56-8083-01 3 167507090 167507090 A C SERPINI1 Silent p.G58G 0.16 TCGA-56-8083-01 3 169664484 169664484 T C RP11-379K17.4 RNA 0.53 TCGA-56-8083-01 3 191093146 191093146 C T CCDC50 Silent p.S248S 0.73 TCGA-56-8083-01 3 43389568 43389568 G A SNRK Missense_Mutation p.G606D 0.14 deleterious_low_confidence(0.01) benign(0.43) TCGA-56-8083-01 3 77147332 77147332 G T ROBO2 Missense_Mutation p.D93Y 0.79 deleterious(0) unknown(0) TCGA-56-8083-01 4 123333769 123333769 G A ADAD1 Missense_Mutation p.A352T 0.47 tolerated(0.3) possibly_damaging(0.585) TCGA-56-8083-01 4 168155152 168155152 C A SPOCK3 Missense_Mutation p.W58L 0.88 deleterious(0) possibly_damaging(0.54) TCGA-56-8083-01 4 4393306 4393306 C A NSG1 Silent p.T78T 0.92 TCGA-56-8083-01 4 44626756 44626756 A G YIPF7 Missense_Mutation p.I181T 0.79 tolerated(0.06) benign(0.065) TCGA-56-8083-01 4 68934471 68934471 A G TMPRSS11F Missense_Mutation p.V207A 0.05 tolerated(0.16) benign(0.088) TCGA-56-8083-01 4 89015805 89015805 G - ABCG2 Frame_Shift_Del p.Q582Sfs*34 0.28 TCGA-56-8083-01 4 90816438 90816438 G T MMRN1 Missense_Mutation p.A106S 0.41 tolerated_low_confidence(0.1) benign(0.055) TCGA-56-8083-01 4 96761664 96761664 G A PDHA2 Silent p.V121V 0.33 TCGA-56-8083-01 5 112179629 112179629 A C APC Silent p.R2780R 0.83 TCGA-56-8083-01 5 149440436 149440436 C A CSF1R Missense_Mutation p.C653F 0.80 deleterious(0) probably_damaging(1) TCGA-56-8083-01 5 19473709 19473709 C A CDH18 Missense_Mutation p.D667Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-56-8083-01 5 23527675 23527675 C T PRDM9 Silent p.H826H 0.30 TCGA-56-8083-01 5 41057208 41057208 T A MROH2B Intron 0.18 TCGA-56-8083-01 5 41149357 41149357 C T C6 Nonsense_Mutation p.W870* 0.70 TCGA-56-8083-01 5 55212958 55212958 T C IL31RA 3'UTR 0.77 TCGA-56-8083-01 5 79855261 79855261 G T ANKRD34B Missense_Mutation p.T193N 0.66 deleterious(0) possibly_damaging(0.545) TCGA-56-8083-01 6 100368902 100368902 A T MCHR2 Missense_Mutation p.F313I 0.42 deleterious(0.04) probably_damaging(0.995) TCGA-56-8083-01 6 111995735 111995735 C A FYN Nonsense_Mutation p.E458* 0.43 TCGA-56-8083-01 6 117662719 117662719 G T ROS1 Missense_Mutation p.H1582Q 0.41 tolerated(0.71) benign(0.002) TCGA-56-8083-01 6 132021928 132021928 C A OR2A4 Missense_Mutation p.G205V 0.58 tolerated(1) benign(0) TCGA-56-8083-01 6 133044175 133044175 A T VNN3 3'UTR 0.59 TCGA-56-8083-01 6 167590482 167590482 T A TCP10L2 Intron 0.19 TCGA-56-8083-01 6 169628279 169628279 G T THBS2 Missense_Mutation p.A786D 0.07 tolerated(1) probably_damaging(0.969) TCGA-56-8083-01 6 17632923 17632923 C A NUP153 Missense_Mutation p.A873S 0.53 deleterious(0.03) probably_damaging(0.985) TCGA-56-8083-01 6 26124401 26124402 - T HIST1H2AC 5'Flank 0.40 TCGA-56-8083-01 6 26409789 26409789 G T BTN3A1 Missense_Mutation p.W248C 0.36 deleterious(0.04) probably_damaging(0.999) TCGA-56-8083-01 6 27879467 27879467 C T OR2B2 Missense_Mutation p.V211M 0.42 deleterious(0.02) benign(0.298) TCGA-56-8083-01 6 31779036 31779036 C T HSPA1L Silent p.R238R 0.41 TCGA-56-8083-01 6 33660561 33660562 - ATCATT ITPR3 In_Frame_Ins p.I2506_I2507dup 0.26 TCGA-56-8083-01 6 36982760 36982760 G T FGD2 Silent p.P325P 0.46 TCGA-56-8083-01 6 44148686 44148686 C A CAPN11 Silent p.T607T 0.38 TCGA-56-8083-01 6 51824787 51824787 C A PKHD1 Missense_Mutation p.R1930M 0.48 deleterious(0.01) possibly_damaging(0.832) TCGA-56-8083-01 6 55216306 55216306 C A GFRAL Missense_Mutation p.T209K 0.46 deleterious(0) benign(0.077) TCGA-56-8083-01 6 576820 576820 C G EXOC2 Missense_Mutation p.G419R 0.51 tolerated(0.15) benign(0.116) TCGA-56-8083-01 6 74072475 74072475 C T KHDC3L Missense_Mutation p.P8L 0.55 deleterious(0.03) possibly_damaging(0.809) TCGA-56-8083-01 7 150217082 150217082 G A GIMAP7 Missense_Mutation p.R7H 0.89 tolerated(0.08) benign(0.002) TCGA-56-8083-01 7 43503275 43503275 C G HECW1 Missense_Mutation p.R890G 0.35 deleterious(0) probably_damaging(0.999) TCGA-56-8083-01 7 44579451 44579451 G T NPC1L1 Missense_Mutation p.T182K 0.45 tolerated(0.2) benign(0.033) TCGA-56-8083-01 7 53103825 53103825 C A POM121L12 Missense_Mutation p.P154H 0.33 deleterious(0.02) probably_damaging(0.979) TCGA-56-8083-01 7 73106938 73106938 C T WBSCR22 Nonsense_Mutation p.R158* 0.61 TCGA-56-8083-01 8 12957999 12957999 G T DLC1 Missense_Mutation p.P616H 0.84 deleterious(0.03) possibly_damaging(0.572) TCGA-56-8083-01 8 27098725 27098725 A T STMN4 Missense_Mutation p.L82Q 0.78 deleterious(0) probably_damaging(0.999) TCGA-56-8083-01 8 6302438 6302438 G A MCPH1 Missense_Mutation p.G399R 0.80 tolerated(0.76) benign(0.006) TCGA-56-8083-01 8 6378721 6378721 C G ANGPT2 Silent p.L259L 0.72 TCGA-56-8083-01 8 87242405 87242405 G T SLC7A13 Silent p.S34S 0.45 TCGA-56-8083-01 9 135553760 135553760 G A GTF3C4 Missense_Mutation p.E252K 0.45 deleterious(0.02) probably_damaging(0.995) TCGA-56-8083-01 9 140082016 140082016 C T ANAPC2 Silent p.P219P 0.41 TCGA-56-8083-01 9 87549198 87549198 G T NTRK2 Silent p.V585V 0.35 TCGA-56-8083-01 X 105450429 105450429 G T MUM1L1 Missense_Mutation p.S335I 0.92 deleterious(0.01) benign(0.141) TCGA-56-8083-01 X 109964674 109964674 A G CHRDL1 Missense_Mutation p.F129S 0.92 deleterious(0) probably_damaging(0.999) TCGA-56-8083-01 X 135586563 135586563 C T HTATSF1 Missense_Mutation p.R259W 0.88 deleterious(0.02) benign(0.134) TCGA-56-8083-01 X 1419381 1419381 A T CSF2RA Intron 0.42 TCGA-56-8083-01 X 1584696 1584696 G - P2RY8 Frame_Shift_Del p.N253Tfs*10 0.25 TCGA-56-8083-01 X 37029625 37029625 C A FAM47C 3'UTR 0.96 TCGA-56-8083-01 X 49355874 49355874 T C GAGE2A Silent p.P52P 0.29 TCGA-56-8083-01 X 8997346 8997346 A T FAM9B Splice_Site p.X131_splice 0.91 TCGA-56-8083-01 X 90691680 90691680 C T PABPC5 Silent p.S368S 0.77 TCGA-56-8083-01 X 96173506 96173506 A T DIAPH2 Splice_Site p.X290_splice 0.95 TCGA-56-8201-01 10 112266864 112266864 C G DUSP5 Missense_Mutation p.H234D 0.06 deleterious(0) benign(0.163) TCGA-56-8201-01 10 119305231 119305231 G T EMX2 Missense_Mutation p.Q165H 0.12 deleterious(0) probably_damaging(1) TCGA-56-8201-01 10 127782626 127782626 T C ADAM12 Missense_Mutation p.D361G 0.25 deleterious(0) probably_damaging(1) TCGA-56-8201-01 10 13325815 13325815 C G PHYH Missense_Mutation p.G235R 0.07 deleterious(0.02) possibly_damaging(0.638) TCGA-56-8201-01 10 135012301 135012301 C T KNDC1 Silent p.P763P 0.07 TCGA-56-8201-01 10 135101792 135101792 G A TUBGCP2 Silent p.L549L 0.07 TCGA-56-8201-01 10 26305812 26305812 G T MYO3A Missense_Mutation p.W191L 0.12 deleterious(0) probably_damaging(1) TCGA-56-8201-01 10 37447479 37447479 C A ANKRD30A Missense_Mutation p.A566D 0.08 deleterious(0.04) benign(0.066) TCGA-56-8201-01 10 83635628 83635628 A T NRG3 Missense_Mutation p.S178C 0.06 deleterious(0.01) possibly_damaging(0.799) TCGA-56-8201-01 10 84744957 84744957 C A NRG3 Missense_Mutation p.L563M 0.07 tolerated(0.13) benign(0.14) TCGA-56-8201-01 10 88769677 88769677 G C RP11-96C23.10 RNA 0.26 TCGA-56-8201-01 11 12231075 12231075 A T MICAL2 Silent p.T207T 0.18 TCGA-56-8201-01 11 124440853 124440853 G T OR8A1 Missense_Mutation p.V297L 0.11 deleterious(0.04) benign(0.417) TCGA-56-8201-01 11 15212360 15212360 G T INSC Missense_Mutation p.K278N 0.19 deleterious(0) benign(0.139) TCGA-56-8201-01 11 16119221 16119221 G C SOX6 Silent p.P304P 0.20 TCGA-56-8201-01 11 40137592 40137592 T C LRRC4C Missense_Mutation p.H84R 0.13 tolerated(0.38) benign(0.032) TCGA-56-8201-01 11 4112956 4112956 C G STIM1 Silent p.G662G 0.09 TCGA-56-8201-01 11 43940619 43940619 G T ALKBH3 Missense_Mutation p.R234I 0.16 deleterious(0.04) probably_damaging(0.97) TCGA-56-8201-01 11 55032400 55032400 A G TRIM48 Silent p.Q23Q 0.10 TCGA-56-8201-01 11 55579586 55579586 T A OR5L1 Missense_Mutation p.L215H 0.10 deleterious(0) probably_damaging(0.988) TCGA-56-8201-01 11 55861491 55861491 C A OR8I2 Silent p.A236A 0.21 TCGA-56-8201-01 11 56043760 56043760 G T OR5T1 Missense_Mutation p.G216C 0.24 deleterious(0) possibly_damaging(0.808) TCGA-56-8201-01 11 56086079 56086079 A G OR8K3 Silent p.T99T 0.16 TCGA-56-8201-01 11 57100280 57100280 C - SSRP1 Frame_Shift_Del p.G196Efs*13 0.13 TCGA-56-8201-01 11 59245646 59245646 C G OR4D10 Silent p.T248T 0.14 TCGA-56-8201-01 11 72069997 72069997 G C CLPB Missense_Mutation p.F264L 0.08 tolerated(0.06) possibly_damaging(0.775) TCGA-56-8201-01 12 104034015 104034015 G T STAB2 Missense_Mutation p.V341F 0.06 tolerated(0.05) benign(0.257) TCGA-56-8201-01 12 109186418 109186418 G A SSH1 Nonsense_Mutation p.R513* 0.08 TCGA-56-8201-01 12 112481496 112481496 C T NAA25 Missense_Mutation p.R728H 0.11 tolerated(0.09) possibly_damaging(0.66) TCGA-56-8201-01 12 14577810 14577810 G C ATF7IP Missense_Mutation p.G321R 0.19 tolerated_low_confidence(0.46) probably_damaging(0.979) TCGA-56-8201-01 12 19410467 19410467 A T PLEKHA5 Missense_Mutation p.K178I 0.15 deleterious(0) probably_damaging(1) TCGA-56-8201-01 12 22213838 22213838 A G CMAS Missense_Mutation p.I256V 0.16 tolerated(0.43) benign(0.012) TCGA-56-8201-01 12 52884392 52884392 C A KRT6A Missense_Mutation p.Q346H 0.18 deleterious(0.03) benign(0.056) TCGA-56-8201-01 12 54905841 54905841 T A NCKAP1L Missense_Mutation p.V298E 0.12 deleterious(0) possibly_damaging(0.892) TCGA-56-8201-01 12 58128464 58128464 T C AGAP2 Splice_Site p.X410_splice 0.19 TCGA-56-8201-01 12 64202720 64202720 G T TMEM5 Missense_Mutation p.A394S 0.15 tolerated(0.12) benign(0.396) TCGA-56-8201-01 12 645396 645396 G T B4GALNT3 Missense_Mutation p.D96Y 0.22 deleterious(0.01) benign(0.252) TCGA-56-8201-01 12 72023466 72023466 C G ZFC3H1 Missense_Mutation p.G1250A 0.07 deleterious(0.04) probably_damaging(0.988) TCGA-56-8201-01 12 73014928 73014928 T - TRHDE Frame_Shift_Del p.W794Gfs*25 0.20 TCGA-56-8201-01 12 93210107 93210107 C T EEA1 Missense_Mutation p.D600N 0.06 deleterious(0.03) benign(0.275) TCGA-56-8201-01 13 102368000 102368000 C T ITGBL1 Missense_Mutation p.P494L 0.34 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-56-8201-01 13 111930007 111930007 G A ARHGEF7 Missense_Mutation p.G519D 0.25 deleterious(0) probably_damaging(0.992) TCGA-56-8201-01 13 45010652 45010652 C G TSC22D1 Intron 0.04 TCGA-56-8201-01 13 67205396 67205396 G A PCDH9 Nonsense_Mutation p.Q1096* 0.22 TCGA-56-8201-01 14 20215845 20215845 C A OR4Q3 Missense_Mutation p.L87I 0.07 deleterious(0.03) benign(0.029) TCGA-56-8201-01 14 20216158 20216158 T A OR4Q3 Missense_Mutation p.M191K 0.16 deleterious(0.03) benign(0.129) TCGA-56-8201-01 14 20216159 20216159 G C OR4Q3 Missense_Mutation p.M191I 0.15 tolerated(0.08) benign(0.051) TCGA-56-8201-01 14 23884930 23884930 G A MYH7 Missense_Mutation p.R1689C 0.20 deleterious(0) probably_damaging(0.971) TCGA-56-8201-01 14 39815191 39815191 G C CTAGE5 Missense_Mutation p.E644Q 0.08 deleterious(0.01) probably_damaging(0.988) TCGA-56-8201-01 14 57675389 57675389 G A EXOC5 Missense_Mutation p.H689Y 0.03 tolerated(1) possibly_damaging(0.884) TCGA-56-8201-01 14 95035909 95035909 G T SERPINA4 Missense_Mutation p.V421F 0.18 deleterious(0) probably_damaging(0.98) TCGA-56-8201-01 15 33023230 33023230 C A GREM1 Silent p.I113I 0.19 TCGA-56-8201-01 15 40590482 40590482 G T PLCB2 Missense_Mutation p.P366H 0.28 deleterious(0.03) probably_damaging(0.991) TCGA-56-8201-01 15 43900082 43900082 C T STRC Missense_Mutation p.S1258N 0.26 tolerated(0.17) benign(0.001) TCGA-56-8201-01 15 70949414 70949414 C T UACA Missense_Mutation p.R1411Q 0.24 deleterious(0.03) probably_damaging(0.997) TCGA-56-8201-01 15 75122661 75122661 T A CPLX3 Missense_Mutation p.L148H 0.45 deleterious(0) probably_damaging(0.998) TCGA-56-8201-01 15 91433082 91433082 G A FES Silent p.V313V 0.03 TCGA-56-8201-01 16 23392227 23392227 T C SCNN1B 3'UTR 0.07 TCGA-56-8201-01 16 319374 319374 G C RGS11 Missense_Mutation p.P433R 0.19 tolerated(0.08) possibly_damaging(0.524) TCGA-56-8201-01 16 86602246 86602246 C - FOXC2 Frame_Shift_Del p.G437Afs*35 0.23 TCGA-56-8201-01 17 11539997 11539997 G T DNAH9 Missense_Mutation p.R561M 0.30 benign(0.003) TCGA-56-8201-01 17 11539998 11539998 G T DNAH9 Missense_Mutation p.R561S 0.29 benign(0.002) TCGA-56-8201-01 17 11597197 11597197 T G DNAH9 Missense_Mutation p.F1543V 0.06 probably_damaging(1) TCGA-56-8201-01 17 20922480 20922480 G A USP22 Missense_Mutation p.S146L 0.10 tolerated(0.68) benign(0.001) TCGA-56-8201-01 17 27844558 27844558 G A TAOK1 Missense_Mutation p.E598K 0.33 deleterious(0.01) benign(0.045) TCGA-56-8201-01 17 39316645 39316645 C A KRTAP4-4 Missense_Mutation p.C100F 0.34 unknown(0) TCGA-56-8201-01 17 61391883 61391883 T C TANC2 Missense_Mutation p.S358P 0.12 tolerated(0.38) benign(0) TCGA-56-8201-01 17 64213011 64213011 T G APOH Missense_Mutation p.K227Q 0.07 tolerated(0.18) benign(0.004) TCGA-56-8201-01 17 7221645 7221645 C A NEURL4 Missense_Mutation p.A1299S 0.26 tolerated(0.74) benign(0.016) TCGA-56-8201-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.38 tolerated(0.11) benign(0.308) TCGA-56-8201-01 17 80333185 80333185 C T UTS2R Missense_Mutation p.R329C 0.24 deleterious(0) possibly_damaging(0.642) TCGA-56-8201-01 18 48603148 48603148 T C SMAD4 Splice_Site p.X483_splice 0.34 TCGA-56-8201-01 18 61234102 61234102 C A SERPINB12 Missense_Mutation p.A359E 0.17 deleterious(0) probably_damaging(0.986) TCGA-56-8201-01 18 70461385 70461385 G T NETO1 Nonsense_Mutation p.C202* 0.24 TCGA-56-8201-01 19 16040294 16040294 T C CYP4F11 Missense_Mutation p.I106V 0.21 tolerated(0.11) benign(0.003) TCGA-56-8201-01 19 1789665 1789665 T A ATP8B3 Missense_Mutation p.D847V 0.21 tolerated(0.06) possibly_damaging(0.732) TCGA-56-8201-01 19 19655479 19655479 C T CILP2 Missense_Mutation p.R709W 0.15 deleterious(0) probably_damaging(1) TCGA-56-8201-01 19 2120931 2120931 T C AP3D1 Missense_Mutation p.S471G 0.27 tolerated(0.26) benign(0.02) TCGA-56-8201-01 19 41622425 41622425 C T CYP2F1 Silent p.S79S 0.10 TCGA-56-8201-01 19 42880248 42880248 G A MEGF8 Missense_Mutation p.G2553E 0.14 deleterious(0) possibly_damaging(0.607) TCGA-56-8201-01 19 50165569 50165569 C T IRF3 Silent p.V206V 0.09 TCGA-56-8201-01 19 50304813 50304813 G T AP2A1 Missense_Mutation p.V574L 0.06 tolerated(0.09) benign(0.321) TCGA-56-8201-01 19 57723890 57723890 C T ZNF264 Silent p.S475S 0.06 TCGA-56-8201-01 19 746406 746406 G T PALM Silent p.G252G 0.17 TCGA-56-8201-01 19 8367290 8367290 T A CD320 3'UTR 0.17 TCGA-56-8201-01 19 9061151 9061151 G C MUC16 Missense_Mutation p.I8765M 0.12 unknown(0) TCGA-56-8201-01 1 109336259 109336259 A G STXBP3 Missense_Mutation p.Q340R 0.06 deleterious(0) possibly_damaging(0.624) TCGA-56-8201-01 1 110459961 110459961 A G CSF1 Missense_Mutation p.D91G 0.08 deleterious(0.01) probably_damaging(0.964) TCGA-56-8201-01 1 112329686 112329686 G T KCND3 Missense_Mutation p.F383L 0.09 tolerated(0.23) benign(0.011) TCGA-56-8201-01 1 11333945 11333945 G A UBIAD1 Silent p.R119R 0.10 TCGA-56-8201-01 1 119958102 119958102 C T HSD3B2 Silent p.R20R 0.10 TCGA-56-8201-01 1 144880848 144880848 C A PDE4DIP Missense_Mutation p.L1260F 0.10 tolerated(0.71) possibly_damaging(0.549) TCGA-56-8201-01 1 147380361 147380361 G A GJA8 Silent p.V93V 0.05 TCGA-56-8201-01 1 147380362 147380362 G T GJA8 Missense_Mutation p.G94W 0.06 deleterious(0) probably_damaging(1) TCGA-56-8201-01 1 153346259 153346259 C A S100A12 3'UTR 0.26 TCGA-56-8201-01 1 160466144 160466144 A T SLAMF6 Missense_Mutation p.V30E 0.11 deleterious(0) probably_damaging(0.998) TCGA-56-8201-01 1 177199141 177199141 C A BRINP2 Silent p.P43P 0.09 TCGA-56-8201-01 1 177250240 177250240 A T BRINP2 Missense_Mutation p.H643L 0.14 deleterious(0) probably_damaging(0.991) TCGA-56-8201-01 1 183253881 183253881 A C NMNAT2 Missense_Mutation p.C165G 0.05 tolerated(0.08) probably_damaging(0.998) TCGA-56-8201-01 1 186057074 186057074 C T HMCN1 Missense_Mutation p.T3125I 0.10 probably_damaging(0.991) TCGA-56-8201-01 1 192778215 192778215 T A RGS2 Missense_Mutation p.M5K 0.23 deleterious_low_confidence(0.01) benign(0.002) TCGA-56-8201-01 1 207286398 207286398 G T C4BPA Missense_Mutation p.A10S 0.14 tolerated(0.07) benign(0.005) TCGA-56-8201-01 1 222803501 222803501 G A MIA3 Missense_Mutation p.R980H 0.10 tolerated(0.06) probably_damaging(0.998) TCGA-56-8201-01 1 229424557 229424557 A T RAB4A Missense_Mutation p.Q65L 0.21 deleterious(0.03) benign(0.248) TCGA-56-8201-01 1 240371568 240371568 C A FMN2 Silent p.P1152P 0.21 TCGA-56-8201-01 1 247051751 247051751 T C AHCTF1 Missense_Mutation p.K747R 0.07 tolerated(0.14) benign(0.029) TCGA-56-8201-01 1 27269157 27269168 GAGGAAGATGAG - NUDC In_Frame_Del p.E150_E153del 0.14 TCGA-56-8201-01 1 3564044 3564044 C T WRAP73 Silent p.Q50Q 0.19 TCGA-56-8201-01 1 38197185 38197185 G A EPHA10 Missense_Mutation p.P521S 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-56-8201-01 1 44433073 44433073 G T IPO13 Silent p.L900L 0.19 TCGA-56-8201-01 1 51253687 51253687 C G FAF1 Missense_Mutation p.D118H 0.17 deleterious(0.01) probably_damaging(0.955) TCGA-56-8201-01 1 6166789 6166789 G A CHD5 Missense_Mutation p.R1877W 0.16 deleterious(0) probably_damaging(0.998) TCGA-56-8201-01 1 62321825 62321825 G C INADL Missense_Mutation p.D746H 0.09 tolerated(0.1) benign(0.169) TCGA-56-8201-01 1 6635401 6635401 C G TAS1R1 Silent p.L403L 0.07 TCGA-56-8201-01 1 79392651 79392651 C A ELTD1 Missense_Mutation p.V335L 0.10 deleterious(0.02) benign(0.118) TCGA-56-8201-01 1 97548008 97548008 G C DPYD Missense_Mutation p.L929V 0.18 tolerated(0.2) benign(0.092) TCGA-56-8201-01 21 15599241 15599241 A G RBM11 Missense_Mutation p.Y158C 0.17 tolerated(0.14) benign(0.008) TCGA-56-8201-01 22 19226877 19226877 C A CLTCL1 Missense_Mutation p.G239V 0.09 deleterious(0.01) possibly_damaging(0.874) TCGA-56-8201-01 22 22043063 22043063 G T PPIL2 Missense_Mutation p.R355L 0.86 tolerated(0.08) benign(0.059) TCGA-56-8201-01 22 23237660 23237660 G A IGLL5 Missense_Mutation p.G144E 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.617) TCGA-56-8201-01 22 24659664 24659664 C A POM121L9P RNA 0.23 TCGA-56-8201-01 22 39966778 39966778 G A CACNA1I Silent p.P7P 0.16 TCGA-56-8201-01 22 42180359 42180359 C A MEI1 Missense_Mutation p.S1035Y 0.12 deleterious(0.02) possibly_damaging(0.858) TCGA-56-8201-01 22 43617229 43617229 C A SCUBE1 Missense_Mutation p.R500L 0.10 tolerated(0.21) benign(0.106) TCGA-56-8201-01 22 50862018 50862018 G A PPP6R2 Missense_Mutation p.R368Q 0.17 tolerated(0.1) probably_damaging(0.964) TCGA-56-8201-01 2 103299750 103299750 G T SLC9A2 Missense_Mutation p.K345N 0.24 tolerated(0.05) possibly_damaging(0.705) TCGA-56-8201-01 2 121989400 121989400 A C TFCP2L1 Splice_Site p.X447_splice 0.33 TCGA-56-8201-01 2 125547631 125547631 C A CNTNAP5 Missense_Mutation p.H968N 0.26 deleterious(0.04) benign(0.067) TCGA-56-8201-01 2 133540904 133540904 G A NCKAP5 Silent p.L1160L 0.13 TCGA-56-8201-01 2 141819674 141819674 C A LRP1B Silent p.V394V 0.07 TCGA-56-8201-01 2 163044800 163044800 C A FAP Nonsense_Mutation p.E565* 0.16 TCGA-56-8201-01 2 166246010 166246010 C A SCN2A Silent p.T1898T 0.13 TCGA-56-8201-01 2 166535266 166535266 C A CSRNP3 Missense_Mutation p.A254E 0.08 tolerated(0.27) possibly_damaging(0.54) TCGA-56-8201-01 2 172950635 172950635 G T DLX1 Missense_Mutation p.S77I 0.27 tolerated(0.14) benign(0.028) TCGA-56-8201-01 2 175673732 175673732 C A CHN1 Missense_Mutation p.D335Y 0.08 deleterious(0) probably_damaging(1) TCGA-56-8201-01 2 179721096 179721096 T C CCDC141 Missense_Mutation p.K918R 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-56-8201-01 2 216230342 216230342 C G FN1 Missense_Mutation p.D2344H 0.18 deleterious(0) probably_damaging(1) TCGA-56-8201-01 2 219209531 219209531 T G PNKD Missense_Mutation p.C329G 0.19 tolerated(0.07) possibly_damaging(0.56) TCGA-56-8201-01 2 27672923 27672923 T C IFT172 Missense_Mutation p.N1331S 0.06 tolerated(0.34) benign(0) TCGA-56-8201-01 2 32693835 32693835 G T BIRC6 Silent p.L2037L 0.26 TCGA-56-8201-01 2 44041649 44041649 C T ABCG5 Missense_Mutation p.V577I 0.34 tolerated(0.16) benign(0.26) TCGA-56-8201-01 2 61575144 61575144 G A USP34 Nonsense_Mutation p.Q716* 0.07 TCGA-56-8201-01 2 79254206 79254206 G T REG3G Missense_Mutation p.S81I 0.07 deleterious(0) possibly_damaging(0.879) TCGA-56-8201-01 2 95715394 95715394 C G MAL Silent p.T110T 0.37 TCGA-56-8201-01 2 98809361 98809361 G T VWA3B Missense_Mutation p.R489S 0.07 deleterious(0) probably_damaging(1) TCGA-56-8201-01 3 126751332 126751332 G C PLXNA1 Missense_Mutation p.Q1778H 0.07 deleterious(0) probably_damaging(0.999) TCGA-56-8201-01 3 155200669 155200669 C A PLCH1 Missense_Mutation p.G1057V 0.15 tolerated_low_confidence(0.19) benign(0.13) TCGA-56-8201-01 3 15529785 15529801 CATGAGATTCTTCATGT - COLQ Frame_Shift_Del p.D78Afs*50 0.12 TCGA-56-8201-01 3 179322657 179322657 G C NDUFB5 Silent p.L18L 0.17 TCGA-56-8201-01 3 38627332 38627332 C G SCN5A Missense_Mutation p.W879C 0.15 deleterious(0) probably_damaging(0.999) TCGA-56-8201-01 3 62477012 62477012 A G CADPS Splice_Site p.X1009_splice 0.18 TCGA-56-8201-01 4 105393437 105393437 C A CXXC4 3'UTR 0.13 TCGA-56-8201-01 4 140394205 140394205 A C RAB33B Missense_Mutation p.L205F 0.12 deleterious(0.04) possibly_damaging(0.461) TCGA-56-8201-01 4 15627242 15627242 C T FBXL5 Missense_Mutation p.E495K 0.19 deleterious_low_confidence(0.03) possibly_damaging(0.557) TCGA-56-8201-01 4 165891015 165891015 A G TRIM61 Missense_Mutation p.L47P 0.12 deleterious(0) possibly_damaging(0.877) TCGA-56-8201-01 4 187538860 187538860 A G FAT1 Splice_Site p.X2960_splice 0.25 TCGA-56-8201-01 4 30724968 30724968 G T PCDH7 Missense_Mutation p.D642Y 0.24 deleterious(0) possibly_damaging(0.702) TCGA-56-8201-01 4 3088674 3088674 A - HTT Frame_Shift_Del p.E91Dfs*10 0.21 TCGA-56-8201-01 4 57891109 57891109 G C POLR2B Missense_Mutation p.V1008L 0.04 deleterious(0.03) probably_damaging(0.999) TCGA-56-8201-01 5 112137027 112137027 A G APC Missense_Mutation p.N261D 0.34 benign(0.004) TCGA-56-8201-01 5 14291230 14291230 G C TRIO Missense_Mutation p.D316H 0.08 probably_damaging(0.921) TCGA-56-8201-01 5 14369549 14369549 G A TRIO Missense_Mutation p.D1045N 0.06 possibly_damaging(0.874) TCGA-56-8201-01 5 147715120 147715120 A G SPINK9 5'Flank 0.10 TCGA-56-8201-01 5 154395323 154395323 A T KIF4B Missense_Mutation p.K635M 0.19 deleterious(0) probably_damaging(0.954) TCGA-56-8201-01 5 171295708 171295708 T C FBXW11 Silent p.L520L 0.23 TCGA-56-8201-01 5 176001170 176001170 G A CDHR2 Silent p.E164E 0.22 TCGA-56-8201-01 5 240581 240581 G T SDHA Missense_Mutation p.S514I 0.07 deleterious_low_confidence(0.03) benign(0.085) TCGA-56-8201-01 5 41018847 41018847 C T MROH2B Silent p.L873L 0.07 TCGA-56-8201-01 5 41917227 41917227 T C C5orf51 Silent p.T237T 0.32 TCGA-56-8201-01 5 79773142 79773142 T C ZFYVE16 Silent p.S1522S 0.44 TCGA-56-8201-01 5 94903717 94903717 G C ARSK Missense_Mutation p.G127A 0.25 deleterious(0) probably_damaging(1) TCGA-56-8201-01 6 12121643 12121643 G - HIVEP1 Frame_Shift_Del p.E539Kfs*3 0.42 TCGA-56-8201-01 6 152725400 152725400 A G SYNE1 Missense_Mutation p.V2258A 0.12 benign(0.066) TCGA-56-8201-01 6 160237603 160237603 G T PNLDC1 Silent p.A352A 0.29 TCGA-56-8201-01 6 160663376 160663376 G T SLC22A2 Silent p.A446A 0.32 TCGA-56-8201-01 6 160769571 160769571 C A SLC22A3 Silent p.V40V 0.30 TCGA-56-8201-01 6 160899680 160899680 T C LPAL2 RNA 0.27 TCGA-56-8201-01 6 26199326 26199326 G A HIST1H2AD Missense_Mutation p.P49L 0.20 deleterious_low_confidence(0.03) possibly_damaging(0.743) TCGA-56-8201-01 6 30043575 30043575 A G RNF39 5'UTR 0.34 TCGA-56-8201-01 6 74117690 74117690 G A DDX43 Missense_Mutation p.V349I 0.25 tolerated(1) benign(0.028) TCGA-56-8201-01 6 97051607 97051607 T C FHL5 Missense_Mutation p.Y40H 0.20 tolerated(0.19) possibly_damaging(0.45) TCGA-56-8201-01 7 106508955 106508955 G A PIK3CG Missense_Mutation p.E317K 0.13 tolerated(0.75) benign(0.043) TCGA-56-8201-01 7 11676105 11676105 G T THSD7A Missense_Mutation p.P225Q 0.16 deleterious(0) probably_damaging(0.979) TCGA-56-8201-01 7 31123790 31123790 T C ADCYAP1R1 Silent p.D121D 0.18 TCGA-56-8201-01 7 45077926 45077926 G A CCM2 Silent p.K56K 0.09 TCGA-56-8201-01 7 82578905 82578905 C A PCLO Missense_Mutation p.A3667S 0.14 unknown(0) TCGA-56-8201-01 7 87011241 87011241 G T CROT Missense_Mutation p.A360S 0.16 deleterious(0.02) probably_damaging(0.911) TCGA-56-8201-01 8 101272105 101272105 C G RNF19A Silent p.L601L 0.08 TCGA-56-8201-01 8 104447984 104447984 A G DCAF13 Missense_Mutation p.I458V 0.16 tolerated(0.47) benign(0.007) TCGA-56-8201-01 8 110448646 110448646 G A PKHD1L1 Silent p.V1195V 0.24 TCGA-56-8201-01 8 131072954 131072954 T C ASAP1 Silent p.S1021S 0.19 TCGA-56-8201-01 8 139164833 139164833 C A FAM135B Missense_Mutation p.V629L 0.15 tolerated(0.87) benign(0.002) TCGA-56-8201-01 8 139164834 139164834 C A FAM135B Missense_Mutation p.M628I 0.13 tolerated(0.19) benign(0.008) TCGA-56-8201-01 8 139727980 139727980 T A COL22A1 Splice_Site p.X822_splice 0.24 TCGA-56-8201-01 8 51314822 51314822 T A SNTG1 Missense_Mutation p.V27E 0.13 deleterious(0) probably_damaging(0.955) TCGA-56-8201-01 8 59511849 59511849 C A NSMAF Missense_Mutation p.W540C 0.22 deleterious(0) probably_damaging(1) TCGA-56-8201-01 8 68145177 68145177 C G ARFGEF1 Missense_Mutation p.G1098A 0.16 tolerated(0.76) benign(0.013) TCGA-56-8201-01 9 100850229 100850229 G C TRIM14 Silent p.A284A 0.15 TCGA-56-8201-01 9 123589049 123589049 G C PSMD5 Missense_Mutation p.L270V 0.12 deleterious(0.01) probably_damaging(0.987) TCGA-56-8201-01 9 127983028 127983028 C T RABEPK Intron 0.33 TCGA-56-8201-01 9 131872764 131872764 C A CRAT Missense_Mutation p.V9L 0.16 tolerated(0.62) benign(0) TCGA-56-8201-01 X 101910851 101910851 G C GPRASP1 Missense_Mutation p.E670D 0.22 tolerated(0.45) benign(0.005) TCGA-56-8201-01 X 117695438 117695438 G A DOCK11 Silent p.S217S 0.14 TCGA-56-8201-01 X 148798135 148798135 C A MAGEA11 Missense_Mutation p.P330H 0.38 deleterious(0.01) benign(0.1) TCGA-56-8201-01 X 29973374 29973374 A G IL1RAPL1 Missense_Mutation p.I510V 0.32 tolerated(0.7) probably_damaging(0.926) TCGA-56-8201-01 X 3235707 3235707 G A MXRA5 Silent p.H2005H 0.32 TCGA-56-8304-01 10 26581476 26581476 G T GAD2 Missense_Mutation p.G490V 0.26 deleterious(0) probably_damaging(1) TCGA-56-8304-01 10 35322093 35322093 C G CUL2 Splice_Site p.X389_splice 0.23 TCGA-56-8304-01 10 44868764 44868764 C A CXCL12 3'Flank 0.33 TCGA-56-8304-01 10 50531840 50531840 C A C10orf71 Missense_Mutation p.P417H 0.27 deleterious(0.01) probably_damaging(0.946) TCGA-56-8304-01 10 50819437 50819437 G T SLC18A3 Silent p.A217A 0.29 TCGA-56-8304-01 10 50943314 50943314 G A OGDHL Missense_Mutation p.T998I 0.23 tolerated(0.15) benign(0.005) TCGA-56-8304-01 10 54530487 54530487 C A MBL2 Missense_Mutation p.G83W 0.29 deleterious(0) probably_damaging(1) TCGA-56-8304-01 10 70706307 70706307 G A DDX50 Missense_Mutation p.G712E 0.35 deleterious_low_confidence(0.01) unknown(0) TCGA-56-8304-01 10 71129352 71129352 C A HK1 Silent p.R287R 0.11 TCGA-56-8304-01 10 75260579 75260589 CCTCACGTTTG - USP54 Frame_Shift_Del p.S1440* 0.32 TCGA-56-8304-01 10 89717644 89717644 G A PTEN Silent p.K223K 0.35 TCGA-56-8304-01 10 91177135 91177135 T C IFIT5 Missense_Mutation p.V60A 0.33 deleterious(0.03) benign(0.21) TCGA-56-8304-01 11 104879538 104879538 T C CASP5 Silent p.V72V 0.36 TCGA-56-8304-01 11 117710488 117710488 C T FXYD6 Intron 0.25 TCGA-56-8304-01 11 118133773 118133773 C A MPZL2 Missense_Mutation p.R33L 0.25 tolerated(0.13) benign(0.206) TCGA-56-8304-01 11 118944604 118944604 A G VPS11 Missense_Mutation p.Y393C 0.21 deleterious(0) probably_damaging(0.986) TCGA-56-8304-01 11 124740949 124740949 C G ROBO3 Missense_Mutation p.A358G 0.20 deleterious(0) possibly_damaging(0.846) TCGA-56-8304-01 11 13466587 13466587 G C BTBD10 Missense_Mutation p.L29V 0.21 deleterious_low_confidence(0.01) benign(0.004) TCGA-56-8304-01 11 19246143 19246143 C G E2F8 3'UTR 0.19 TCGA-56-8304-01 11 30032798 30032798 C T KCNA4 Silent p.R476R 0.25 TCGA-56-8304-01 11 30921123 30921123 A G DCDC1 Missense_Mutation p.L1574P 0.31 deleterious(0) possibly_damaging(0.883) TCGA-56-8304-01 11 4702906 4702906 G - OR51E2 3'UTR 0.18 TCGA-56-8304-01 11 5153630 5153630 G T OR52A5 Silent p.P81P 0.18 TCGA-56-8304-01 11 5530197 5530197 G T UBQLN3 Missense_Mutation p.Q198K 0.29 deleterious(0.01) probably_damaging(0.995) TCGA-56-8304-01 11 55735600 55735600 A T OR10AG1 Missense_Mutation p.Y114N 0.26 deleterious(0) probably_damaging(0.981) TCGA-56-8304-01 11 55797963 55797963 C A OR5AS1 Silent p.L23L 0.13 TCGA-56-8304-01 11 5717446 5717446 G T TRIM22 5'UTR 0.14 TCGA-56-8304-01 11 5776704 5776704 C A OR52N4 Missense_Mutation p.A245D 0.25 deleterious(0) possibly_damaging(0.9) TCGA-56-8304-01 11 5799434 5799434 G T OR52N5 Missense_Mutation p.T144K 0.30 deleterious(0) benign(0.112) TCGA-56-8304-01 11 58207513 58207513 C A OR5B12 Missense_Mutation p.V38F 0.34 tolerated_low_confidence(0.08) benign(0.025) TCGA-56-8304-01 11 59225078 59225078 G T OR4D6 Silent p.L215L 0.24 TCGA-56-8304-01 11 6238968 6238968 C T FAM160A2 Silent p.R630R 0.31 TCGA-56-8304-01 11 62556626 62556626 C T TMEM179B Silent p.Y76Y 0.20 TCGA-56-8304-01 11 63667427 63667427 A C MARK2 Missense_Mutation p.K205Q 0.21 deleterious(0) probably_damaging(0.996) TCGA-56-8304-01 11 63667429 63667429 G T MARK2 Missense_Mutation p.K205N 0.22 deleterious(0) probably_damaging(0.999) TCGA-56-8304-01 11 64514048 64514048 C A PYGM 3'UTR 0.27 TCGA-56-8304-01 11 6477914 6477914 T G TRIM3 Missense_Mutation p.K348Q 0.20 deleterious(0.01) probably_damaging(0.942) TCGA-56-8304-01 11 82625770 82625770 G A C11orf82 5'UTR 0.23 TCGA-56-8304-01 11 93466757 93466757 C T KIAA1731 3'Flank 0.22 TCGA-56-8304-01 11 95826038 95826038 G C MAML2 Nonsense_Mutation p.S386* 0.35 TCGA-56-8304-01 12 100887136 100887136 A C NR1H4 Missense_Mutation p.H12P 0.24 deleterious(0.04) benign(0.048) TCGA-56-8304-01 12 104129270 104129270 T A STAB2 Missense_Mutation p.V1821D 0.33 deleterious(0) possibly_damaging(0.819) TCGA-56-8304-01 12 107219502 107219502 A T RIC8B Splice_Site p.X248_splice 0.24 TCGA-56-8304-01 12 113552638 113552638 A T RASAL1 Missense_Mutation p.L383Q 0.25 deleterious(0) probably_damaging(1) TCGA-56-8304-01 12 121434113 121434113 C T HNF1A Missense_Mutation p.S335L 0.38 tolerated(0.41) benign(0.167) TCGA-56-8304-01 12 130927048 130927048 G T RIMBP2 Missense_Mutation p.D266E 0.09 tolerated(0.16) benign(0.003) TCGA-56-8304-01 12 132527882 132527882 G A EP400 Missense_Mutation p.A2081T 0.22 unknown(0) TCGA-56-8304-01 12 133202283 133202283 G A POLE Missense_Mutation p.T2202M 0.25 tolerated(0.24) benign(0) TCGA-56-8304-01 12 2027411 2027411 A T CACNA2D4 Splice_Site p.X76_splice 0.39 TCGA-56-8304-01 12 31131489 31131500 CTGCTAGTATTT - TSPAN11 Splice_Site p.X93_splice 0.39 TCGA-56-8304-01 12 3677904 3677904 G T PRMT8 Missense_Mutation p.V172L 0.16 tolerated(0.09) benign(0.044) TCGA-56-8304-01 12 44693514 44693514 G T TMEM117 Missense_Mutation p.V254L 0.26 tolerated(0.28) benign(0.05) TCGA-56-8304-01 12 4737406 4737406 T A AKAP3 Missense_Mutation p.K221M 0.37 deleterious(0.03) probably_damaging(0.963) TCGA-56-8304-01 12 49434648 49434648 G - KMT2D Frame_Shift_Del p.P2302Qfs*20 0.24 TCGA-56-8304-01 12 51583980 51583980 T A POU6F1 3'UTR 0.35 TCGA-56-8304-01 12 51696476 51696476 G A BIN2 Silent p.I102I 0.42 TCGA-56-8304-01 12 52448224 52448224 G A NR4A1 Missense_Mutation p.A51T 0.09 tolerated(1) probably_damaging(0.984) TCGA-56-8304-01 12 53041638 53041638 T C KRT2 Missense_Mutation p.Y375C 0.33 deleterious(0) probably_damaging(0.995) TCGA-56-8304-01 12 66703940 66703940 G T HELB Missense_Mutation p.R411I 0.22 tolerated(0.19) benign(0.007) TCGA-56-8304-01 12 72050556 72050556 G C ZFC3H1 Intron 0.20 TCGA-56-8304-01 12 75444769 75444769 G T KCNC2 Missense_Mutation p.A339D 0.35 deleterious(0.02) probably_damaging(0.964) TCGA-56-8304-01 12 75804306 75804306 C T GLIPR1L2 Silent p.V109V 0.20 TCGA-56-8304-01 12 8802130 8802130 G T MFAP5 Missense_Mutation p.R126S 0.31 deleterious(0) probably_damaging(1) TCGA-56-8304-01 12 9994425 9994425 T A KLRF1 Missense_Mutation p.W118R 0.45 deleterious(0) probably_damaging(1) TCGA-56-8304-01 13 108862303 108862303 G C LIG4 Nonsense_Mutation p.Y438* 0.04 TCGA-56-8304-01 13 32953614 32953614 T G BRCA2 Missense_Mutation p.L2972W 0.34 deleterious(0) probably_damaging(1) TCGA-56-8304-01 14 106054206 106054206 G T IGHA2 Missense_Mutation p.P105T 0.22 tolerated(0.4) benign(0.017) TCGA-56-8304-01 14 19553458 19553458 G T POTEG Silent p.V14V 0.10 TCGA-56-8304-01 14 20389023 20389023 G T OR4K5 Silent p.L86L 0.21 TCGA-56-8304-01 14 23792645 23792645 C T PABPN1 Silent p.V198V 0.19 TCGA-56-8304-01 14 24787574 24787574 G C ADCY4 3'UTR 0.20 TCGA-56-8304-01 14 33293569 33293569 G A AKAP6 Missense_Mutation p.E2184K 0.07 tolerated_low_confidence(0.23) benign(0.005) TCGA-56-8304-01 14 55422329 55422329 T C WDHD1 Silent p.V1000V 0.19 TCGA-56-8304-01 14 59113003 59113003 G T DACT1 Silent p.L554L 0.32 TCGA-56-8304-01 14 94750351 94750351 G C SERPINA10 Missense_Mutation p.S429C 0.35 deleterious(0.04) probably_damaging(0.934) TCGA-56-8304-01 15 25940019 25940019 C G ATP10A Missense_Mutation p.S1012T 0.28 deleterious(0.01) benign(0.245) TCGA-56-8304-01 15 30010927 30010927 T A TJP1 Missense_Mutation p.Y1140F 0.40 tolerated_low_confidence(0.34) benign(0.079) TCGA-56-8304-01 15 89834888 89834888 G A FANCI Silent p.L645L 0.38 TCGA-56-8304-01 15 91827372 91827372 C A SV2B Missense_Mutation p.F543L 0.36 tolerated(0.27) possibly_damaging(0.782) TCGA-56-8304-01 16 19126138 19126138 A T ITPRIPL2 Missense_Mutation p.S119C 0.46 deleterious(0) probably_damaging(0.971) TCGA-56-8304-01 16 20357491 20357491 A G UMOD Missense_Mutation p.V380A 0.25 deleterious(0.01) possibly_damaging(0.672) TCGA-56-8304-01 16 20448667 20448667 G T ACSM5 Missense_Mutation p.S505I 0.06 deleterious(0) probably_damaging(1) TCGA-56-8304-01 16 24888576 24888576 C T SLC5A11 Intron 0.27 TCGA-56-8304-01 16 26147187 26147187 C T HS3ST4 Missense_Mutation p.A330V 0.22 deleterious(0.02) probably_damaging(1) TCGA-56-8304-01 16 4242010 4242010 G A SRL 3'UTR 0.19 TCGA-56-8304-01 16 48395955 48395955 G C SIAH1 Missense_Mutation p.P160A 0.24 deleterious(0) probably_damaging(0.999) TCGA-56-8304-01 16 67690503 67690503 A T RLTPR Missense_Mutation p.S1331C 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.599) TCGA-56-8304-01 16 70349905 70349906 - GG DDX19B Frame_Shift_Ins p.I66Gfs*27 0.24 TCGA-56-8304-01 16 70691015 70691015 G T IL34 Missense_Mutation p.Q131H 0.19 deleterious(0.04) benign(0.013) TCGA-56-8304-01 16 71683303 71683303 G A PHLPP2 Silent p.P1154P 0.16 TCGA-56-8304-01 16 75276491 75276491 C G BCAR1 Silent p.G216G 0.17 TCGA-56-8304-01 16 89598988 89598988 G T SPG7 Missense_Mutation p.G423V 0.16 deleterious(0.04) possibly_damaging(0.864) TCGA-56-8304-01 16 90127901 90127901 C T PRDM7 Silent p.E303E 0.26 TCGA-56-8304-01 17 37187508 37187508 G T CTD-2206N4.2 5'Flank 0.24 TCGA-56-8304-01 17 41585723 41585723 C G DHX8 Missense_Mutation p.F779L 0.23 deleterious(0.01) benign(0.32) TCGA-56-8304-01 17 44851169 44851169 T C WNT3 Missense_Mutation p.I63V 0.29 tolerated(0.58) benign(0.004) TCGA-56-8304-01 17 61987009 61987009 G A CSHL1 3'Flank 0.27 TCGA-56-8304-01 17 62265791 62265791 C A TEX2 Missense_Mutation p.V728F 0.16 tolerated(0.6) benign(0.001) TCGA-56-8304-01 17 7256381 7256381 G T KCTD11 Silent p.L40L 0.31 TCGA-56-8304-01 17 74063301 74063301 T C SRP68 Missense_Mutation p.N121S 0.20 tolerated(0.52) benign(0.002) TCGA-56-8304-01 17 7577581 7577581 A G TP53 Missense_Mutation p.Y234H 0.38 deleterious(0.01) probably_damaging(0.988) TCGA-56-8304-01 18 12274261 12274261 A G CIDEA Missense_Mutation p.K167R 0.40 tolerated(0.09) possibly_damaging(0.589) TCGA-56-8304-01 18 13068932 13068932 G A CEP192 Missense_Mutation p.S1635N 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-56-8304-01 18 5416104 5416104 C A EPB41L3 Nonsense_Mutation p.E594* 0.20 TCGA-56-8304-01 18 5890248 5890248 G A TMEM200C Silent p.S605S 0.26 TCGA-56-8304-01 18 67715386 67715386 G T RTTN Missense_Mutation p.P1788T 0.31 deleterious(0.02) possibly_damaging(0.653) TCGA-56-8304-01 19 13409886 13409887 GC - CACNA1A Frame_Shift_Del p.A854Rfs*212 0.31 TCGA-56-8304-01 19 2132490 2132490 C A AP3D1 Missense_Mutation p.A148S 0.23 deleterious(0.05) benign(0.32) TCGA-56-8304-01 19 22155516 22155516 C A ZNF208 Nonsense_Mutation p.E774* 0.23 TCGA-56-8304-01 19 22939521 22939521 C A ZNF99 3'Flank 0.34 TCGA-56-8304-01 19 22939522 22939522 A G ZNF99 3'Flank 0.34 TCGA-56-8304-01 19 31768360 31768360 T A TSHZ3 Missense_Mutation p.Y780F 0.31 tolerated(0.11) possibly_damaging(0.474) TCGA-56-8304-01 19 33623118 33623118 G A WDR88 Missense_Mutation p.E15K 0.33 tolerated_low_confidence(0.29) benign(0) TCGA-56-8304-01 19 35633301 35633301 T A FXYD1 Intron 0.19 TCGA-56-8304-01 19 39433295 39433295 C A FBXO17 Missense_Mutation p.A264S 0.24 tolerated(0.19) benign(0.395) TCGA-56-8304-01 19 39964942 39964942 G T SUPT5H Missense_Mutation p.S907I 0.35 deleterious(0.01) benign(0.439) TCGA-56-8304-01 19 44679136 44679136 G T ZNF226 Intron 0.24 TCGA-56-8304-01 19 46498736 46498736 T A CCDC61 5'UTR 0.26 TCGA-56-8304-01 19 48800457 48800457 C A CCDC114 Missense_Mutation p.G597C 0.37 deleterious(0) probably_damaging(0.998) TCGA-56-8304-01 19 50360336 50360336 C A PTOV1 Missense_Mutation p.D221E 0.25 deleterious(0) probably_damaging(0.999) TCGA-56-8304-01 19 50926145 50926145 G T SPIB Missense_Mutation p.A64S 0.30 tolerated(0.17) benign(0.067) TCGA-56-8304-01 19 54080251 54080252 TT - ZNF331 Frame_Shift_Del p.L146Qfs*10 0.23 TCGA-56-8304-01 19 54466605 54466605 G C CACNG8 Missense_Mutation p.G70A 0.33 tolerated_low_confidence(0.57) benign(0.182) TCGA-56-8304-01 19 55047005 55047005 C A KIR3DX1 Missense_Mutation p.P184T 0.16 deleterious(0.03) probably_damaging(0.922) TCGA-56-8304-01 19 55295152 55295152 C G KIR2DL1 Missense_Mutation p.Q312E 0.64 tolerated(0.15) possibly_damaging(0.68) TCGA-56-8304-01 19 55668953 55668953 G T TNNI3 Missense_Mutation p.A2E 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.625) TCGA-56-8304-01 19 55672736 55672736 G A DNAAF3 Silent p.V306V 0.24 TCGA-56-8304-01 19 56321367 56321367 G C NLRP11 Missense_Mutation p.I203M 0.25 tolerated(0.06) possibly_damaging(0.721) TCGA-56-8304-01 19 57932706 57932706 G T ZNF17 Missense_Mutation p.G616W 0.26 deleterious(0) probably_damaging(0.967) TCGA-56-8304-01 19 6306636 6306636 G C ACER1 3'UTR 0.67 TCGA-56-8304-01 19 8997456 8997456 C A MUC16 Missense_Mutation p.G13656C 0.24 probably_damaging(1) TCGA-56-8304-01 1 103388927 103388927 C A COL11A1 Missense_Mutation p.G1207C 0.31 unknown(0) TCGA-56-8304-01 1 113093264 113093264 T C ST7L Missense_Mutation p.Y483C 0.30 deleterious(0) probably_damaging(1) TCGA-56-8304-01 1 114449765 114449765 G T DCLRE1B Nonsense_Mutation p.G113* 0.13 TCGA-56-8304-01 1 150483369 150483369 G T ECM1 Missense_Mutation p.G162W 0.05 tolerated(0.1) possibly_damaging(0.773) TCGA-56-8304-01 1 153995735 153995735 G T NUP210L Silent p.P1387P 0.16 TCGA-56-8304-01 1 154179837 154179837 G C C1orf43 3'UTR 0.19 TCGA-56-8304-01 1 155057697 155057697 G A EFNA3 Missense_Mutation p.V87M 0.23 deleterious(0.01) probably_damaging(0.956) TCGA-56-8304-01 1 158596754 158596754 A G SPTA1 Missense_Mutation p.I1903T 0.07 deleterious(0.04) possibly_damaging(0.872) TCGA-56-8304-01 1 158736426 158736426 C A OR6N1 Missense_Mutation p.G16V 0.07 tolerated(0.09) probably_damaging(0.998) TCGA-56-8304-01 1 159897057 159897057 G A IGSF9 3'UTR 0.11 TCGA-56-8304-01 1 161494939 161494939 G A HSPA6 Missense_Mutation p.G164E 0.34 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-56-8304-01 1 162824783 162824783 G T C1orf110 Silent p.P227P 0.09 TCGA-56-8304-01 1 165380213 165380213 G C RXRG Silent p.S252S 0.25 TCGA-56-8304-01 1 170695411 170695411 G T PRRX1 Missense_Mutation p.M156I 0.35 tolerated(0.11) benign(0.009) TCGA-56-8304-01 1 17328826 17328826 G A ATP13A2 Silent p.S200S 0.11 TCGA-56-8304-01 1 175331848 175331848 G T TNR Missense_Mutation p.S935R 0.24 deleterious(0) probably_damaging(0.947) TCGA-56-8304-01 1 177905430 177905431 CA - SEC16B Splice_Site p.X857_splice 0.15 TCGA-56-8304-01 1 181724486 181724486 G T CACNA1E Missense_Mutation p.K1314N 0.31 deleterious(0) possibly_damaging(0.537) TCGA-56-8304-01 1 183084741 183084741 G T LAMC1 Nonsense_Mutation p.G433* 0.37 TCGA-56-8304-01 1 186302270 186302270 T A TPR Silent p.T1813T 0.10 TCGA-56-8304-01 1 200571196 200571196 C A KIF14 Missense_Mutation p.W660C 0.14 deleterious(0) probably_damaging(0.999) TCGA-56-8304-01 1 200860681 200860681 C T C1orf106 5'Flank 0.07 TCGA-56-8304-01 1 201355594 201355594 C A LAD1 Missense_Mutation p.G299W 0.29 deleterious(0) probably_damaging(0.975) TCGA-56-8304-01 1 201458016 201458016 G C CSRP1 Silent p.V126V 0.15 TCGA-56-8304-01 1 204587381 204587381 G T LRRN2 Missense_Mutation p.H580Q 0.35 tolerated(0.5) benign(0.008) TCGA-56-8304-01 1 207200913 207200913 T C C1orf116 Missense_Mutation p.T11A 0.26 tolerated(0.33) benign(0.005) TCGA-56-8304-01 1 209773413 209773413 T A CAMK1G Missense_Mutation p.F60I 0.13 tolerated(0.32) benign(0.015) TCGA-56-8304-01 1 220363744 220363744 T C RAB3GAP2 Missense_Mutation p.N536D 0.31 tolerated(0.25) benign(0.009) TCGA-56-8304-01 1 235969880 235969880 T A LYST Silent p.V852V 0.28 TCGA-56-8304-01 1 240071982 240071982 C A CHRM3 Missense_Mutation p.Q411K 0.25 tolerated(0.88) benign(0.004) TCGA-56-8304-01 1 240493999 240493999 G T FMN2 Missense_Mutation p.D1512Y 0.40 probably_damaging(1) TCGA-56-8304-01 1 247769387 247769387 C A OR2G3 Missense_Mutation p.P167H 0.12 deleterious(0) probably_damaging(1) TCGA-56-8304-01 1 248224165 248224165 T C OR2L3 Missense_Mutation p.L61P 0.15 deleterious(0) probably_damaging(0.986) TCGA-56-8304-01 1 26695036 26695036 T A ZNF683 Missense_Mutation p.L9F 0.19 deleterious_low_confidence(0.01) benign(0.091) TCGA-56-8304-01 1 27101342 27101342 G T ARID1A Nonsense_Mutation p.E1542* 0.36 TCGA-56-8304-01 1 55473942 55473942 G C BSND Missense_Mutation p.D202H 0.14 deleterious(0) probably_damaging(0.988) TCGA-56-8304-01 1 57383247 57383247 C A C8A Missense_Mutation p.A538E 0.29 deleterious(0.01) possibly_damaging(0.548) TCGA-56-8304-01 1 64120139 64120139 T C PGM1 Splice_Site p.X551_splice 0.27 TCGA-56-8304-01 1 65874439 65874439 C T DNAJC6 Silent p.A869A 0.47 TCGA-56-8304-01 1 66731721 66731721 G C PDE4B Missense_Mutation p.K195N 0.06 tolerated(0.05) benign(0.258) TCGA-56-8304-01 1 75037317 75037317 C A C1orf173 Silent p.V1359V 0.33 TCGA-56-8304-01 1 93711679 93711679 T C CCDC18 Missense_Mutation p.I1053T 0.30 deleterious(0) possibly_damaging(0.599) TCGA-56-8304-01 1 99771515 99771515 G T LPPR4 Missense_Mutation p.S414I 0.18 deleterious(0) probably_damaging(0.998) TCGA-56-8304-01 20 35539660 35539660 T A SAMHD1 Missense_Mutation p.T411S 0.07 tolerated(0.1) benign(0.015) TCGA-56-8304-01 20 39979026 39979026 C G LPIN3 Missense_Mutation p.S364C 0.09 deleterious(0.03) benign(0.014) TCGA-56-8304-01 20 44672559 44672559 G A SLC12A5 Missense_Mutation p.V484I 0.23 tolerated(0.18) benign(0.106) TCGA-56-8304-01 20 44682236 44682236 T A SLC12A5 Missense_Mutation p.M879K 0.27 deleterious(0) benign(0.342) TCGA-56-8304-01 20 4713217 4713217 G A PRNT Missense_Mutation p.P36S 0.33 tolerated_low_confidence(1) benign(0) TCGA-56-8304-01 20 61942844 61942844 G A COL20A1 Missense_Mutation p.V498M 0.38 deleterious(0) probably_damaging(0.994) TCGA-56-8304-01 21 30698705 30698705 G T BACH1 Missense_Mutation p.R187L 0.23 tolerated(0.69) benign(0.029) TCGA-56-8304-01 21 44590627 44590627 G T CRYAA Missense_Mutation p.V64F 0.24 deleterious(0) probably_damaging(0.993) TCGA-56-8304-01 21 46057731 46057731 C T KRTAP10-10 Nonsense_Mutation p.Q133* 0.27 TCGA-56-8304-01 22 20114604 20114604 C G RANBP1 3'UTR 0.21 TCGA-56-8304-01 22 23264788 23264788 G T IGLC7 Silent p.S8S 0.36 TCGA-56-8304-01 22 43830976 43830976 G A MPPED1 Missense_Mutation p.A83T 0.23 tolerated(0.69) benign(0.003) TCGA-56-8304-01 22 44333008 44333008 G T PNPLA3 Missense_Mutation p.A279S 0.25 tolerated(0.3) benign(0.005) TCGA-56-8304-01 2 102957229 102957229 T C IL1RL1 Missense_Mutation p.I184T 0.27 tolerated(0.78) benign(0.05) TCGA-56-8304-01 2 11052663 11052663 C A KCNF1 Nonsense_Mutation p.Y37* 0.31 TCGA-56-8304-01 2 11752716 11752716 G T GREB1 Silent p.P1034P 0.23 TCGA-56-8304-01 2 141298550 141298550 C A LRP1B Missense_Mutation p.R2502I 0.27 possibly_damaging(0.639) TCGA-56-8304-01 2 165997165 165997165 G T SCN3A Missense_Mutation p.P672Q 0.24 deleterious(0.03) possibly_damaging(0.809) TCGA-56-8304-01 2 170103928 170103928 G T LRP2 Nonsense_Mutation p.Y956* 0.40 TCGA-56-8304-01 2 174034607 174034607 T C MLTK Silent p.Y78Y 0.31 TCGA-56-8304-01 2 175619001 175619001 G T CHRNA1 Nonsense_Mutation p.C187* 0.45 TCGA-56-8304-01 2 178634090 178634090 G T PDE11A Nonsense_Mutation p.Y583* 0.22 TCGA-56-8304-01 2 179428630 179428630 C T TTN Missense_Mutation p.R27410K 0.24 TCGA-56-8304-01 2 179611689 179611689 C A TTN Intron 0.35 TCGA-56-8304-01 2 210590475 210590475 T G MAP2 Missense_Mutation p.S1706A 0.27 deleterious(0.03) probably_damaging(0.951) TCGA-56-8304-01 2 231948318 231948318 G T PSMD1 Missense_Mutation p.L521F 0.37 deleterious(0) probably_damaging(0.952) TCGA-56-8304-01 2 234106962 234106962 C T INPP5D Missense_Mutation p.P960L 0.38 deleterious(0) probably_damaging(1) TCGA-56-8304-01 2 241631679 241631679 G T AQP12A Silent p.A104A 0.23 TCGA-56-8304-01 2 25141186 25141186 C G ADCY3 Missense_Mutation p.R224P 0.27 deleterious(0.04) possibly_damaging(0.572) TCGA-56-8304-01 2 26725211 26725211 G T OTOF Missense_Mutation p.L223I 0.21 tolerated(0.17) benign(0.391) TCGA-56-8304-01 2 3483251 3483251 G C TRAPPC12 3'UTR 0.26 TCGA-56-8304-01 2 36774241 36774241 T C CRIM1 Missense_Mutation p.I954T 0.29 tolerated(0.09) benign(0.022) TCGA-56-8304-01 2 79350299 79350299 T A REG1A Silent p.P153P 0.15 TCGA-56-8304-01 2 80530321 80530321 C T LRRTM1 Silent p.L208L 0.26 TCGA-56-8304-01 2 90199192 90199192 C A IGKV1D-12 3'Flank 0.17 TCGA-56-8304-01 2 99936066 99936066 T G TXNDC9 3'UTR 0.16 TCGA-56-8304-01 3 108229309 108229309 T C MYH15 Silent p.L43L 0.24 TCGA-56-8304-01 3 113955401 113955401 G T ZNF80 Missense_Mutation p.S174Y 0.36 deleterious(0) probably_damaging(1) TCGA-56-8304-01 3 115805293 115805293 C G LSAMP Missense_Mutation p.R89P 0.20 tolerated(0.06) possibly_damaging(0.579) TCGA-56-8304-01 3 149220613 149220613 C A TM4SF4 3'UTR 0.26 TCGA-56-8304-01 3 149468481 149468481 C T COMMD2 Nonsense_Mutation p.W129* 0.21 TCGA-56-8304-01 3 154802884 154802884 G T MME Splice_Site p.X66_splice 0.24 TCGA-56-8304-01 3 158366936 158366936 G A GFM1 Missense_Mutation p.G227R 0.03 deleterious(0) probably_damaging(0.993) TCGA-56-8304-01 3 169646263 169646263 C A SAMD7 Missense_Mutation p.T313K 0.20 tolerated(0.3) benign(0.213) TCGA-56-8304-01 3 180327842 180327842 G T TTC14 Missense_Mutation p.G609C 0.41 deleterious_low_confidence(0.03) unknown(0) TCGA-56-8304-01 3 195613869 195613869 T A TNK2 Missense_Mutation p.K134N 0.18 deleterious(0.01) possibly_damaging(0.642) TCGA-56-8304-01 3 196050808 196050808 A C TM4SF19 Silent p.V170V 0.22 TCGA-56-8304-01 3 196736583 196736583 G T MFI2 Missense_Mutation p.H477Q 0.16 deleterious(0) probably_damaging(1) TCGA-56-8304-01 3 36779432 36779432 G T DCLK3 Missense_Mutation p.A240D 0.05 deleterious(0.02) benign(0.296) TCGA-56-8304-01 3 38317094 38317094 C T SLC22A13 Missense_Mutation p.S318L 0.31 tolerated(0.08) benign(0.111) TCGA-56-8304-01 4 100208004 100208004 T C ADH1A Intron 0.35 TCGA-56-8304-01 4 126370017 126370017 C G FAT4 Missense_Mutation p.Q2616E 0.15 benign(0.019) TCGA-56-8304-01 4 134071699 134071699 C A PCDH10 Missense_Mutation p.A135D 0.27 deleterious(0) probably_damaging(0.998) TCGA-56-8304-01 4 156135538 156135538 C T NPY2R Silent p.H149H 0.40 TCGA-56-8304-01 4 22749111 22749111 G T GBA3 Missense_Mutation p.W160L 0.28 deleterious(0) probably_damaging(1) TCGA-56-8304-01 4 39064288 39064288 A G KLHL5 Missense_Mutation p.K52E 0.36 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-56-8304-01 4 57797998 57797998 T C REST Missense_Mutation p.S992P 0.32 tolerated(0.07) benign(0.004) TCGA-56-8304-01 4 71255525 71255525 A G SMR3B Missense_Mutation p.Y67C 0.29 unknown(0) TCGA-56-8304-01 4 77082878 77082878 G A SCARB2 Silent p.L475L 0.43 TCGA-56-8304-01 4 88415130 88415130 T C SPARCL1 Silent p.A274A 0.38 TCGA-56-8304-01 4 955624 955624 T C DGKQ Splice_Site p.X772_splice 0.26 TCGA-56-8304-01 5 11346664 11346664 G A CTNND2 Missense_Mutation p.A483V 0.19 deleterious(0.01) benign(0.069) TCGA-56-8304-01 5 131312416 131312416 T G ACSL6 Splice_Site p.X306_splice 0.41 TCGA-56-8304-01 5 140432494 140432495 - T PCDHB1 Frame_Shift_Ins p.L481Ffs*3 0.31 TCGA-56-8304-01 5 140515685 140515685 C G PCDHB5 Silent p.S223S 0.34 TCGA-56-8304-01 5 143586413 143586413 A C KCTD16 Missense_Mutation p.I46L 0.07 tolerated(0.06) benign(0.015) TCGA-56-8304-01 5 150585004 150585004 G A CCDC69 Silent p.P27P 0.44 TCGA-56-8304-01 5 16764361 16764361 C A MYO10 Nonsense_Mutation p.E442* 0.04 TCGA-56-8304-01 5 35740035 35740035 T C SPEF2 Silent p.F1026F 0.57 TCGA-56-8304-01 5 434027 434027 G A AHRR Missense_Mutation p.R413K 0.46 tolerated(0.34) benign(0.06) TCGA-56-8304-01 5 5462581 5462581 C T KIAA0947 Missense_Mutation p.A1045V 0.47 tolerated(0.49) benign(0.015) TCGA-56-8304-01 5 5464131 5464131 G C KIAA0947 Missense_Mutation p.D1562H 0.62 deleterious(0) probably_damaging(0.98) TCGA-56-8304-01 5 5473809 5473809 G T KIAA0947 Missense_Mutation p.D2121Y 0.18 deleterious(0) probably_damaging(1) TCGA-56-8304-01 5 75505689 75505689 C A SV2C Missense_Mutation p.A297D 0.39 deleterious(0) possibly_damaging(0.876) TCGA-56-8304-01 5 75505690 75505690 C A SV2C Silent p.A297A 0.39 TCGA-56-8304-01 6 105198275 105198275 G A HACE1 Nonsense_Mutation p.Q762* 0.08 TCGA-56-8304-01 6 114379090 114379090 G T HS3ST5 Missense_Mutation p.H124Q 0.16 deleterious(0) probably_damaging(1) TCGA-56-8304-01 6 136476848 136476848 C G PDE7B Missense_Mutation p.N221K 0.32 deleterious(0) probably_damaging(0.96) TCGA-56-8304-01 6 138640892 138640892 C T KIAA1244 Silent p.S1509S 0.16 TCGA-56-8304-01 6 148761332 148761332 G C SASH1 Missense_Mutation p.A100P 0.25 tolerated_low_confidence(0.4) benign(0.009) TCGA-56-8304-01 6 152749388 152749388 G A SYNE1 Missense_Mutation p.A1643V 0.24 benign(0.017) TCGA-56-8304-01 6 166580171 166580171 G T T Missense_Mutation p.P127H 0.30 deleterious(0) probably_damaging(1) TCGA-56-8304-01 6 2117762 2117762 G T GMDS Nonsense_Mutation p.S59* 0.23 TCGA-56-8304-01 6 29430482 29430482 C T OR2H1 Silent p.S312S 0.08 TCGA-56-8304-01 6 32168967 32168967 C T NOTCH4 Missense_Mutation p.D1356N 0.27 tolerated(0.23) benign(0.002) TCGA-56-8304-01 6 35773656 35773656 G T LHFPL5 Missense_Mutation p.G70V 0.24 deleterious(0.02) probably_damaging(1) TCGA-56-8304-01 6 71012611 71012611 T A COL9A1 Intron 0.20 TCGA-56-8304-01 6 74210321 74210321 G T MTO1 Nonsense_Mutation p.G688* 0.22 TCGA-56-8304-01 6 76572432 76572432 C T MYO6 Nonsense_Mutation p.R556* 0.16 TCGA-56-8304-01 6 84644416 84644416 C A CYB5R4 Missense_Mutation p.P306H 0.30 deleterious(0) probably_damaging(0.999) TCGA-56-8304-01 6 96651405 96651405 G T FUT9 Missense_Mutation p.R125M 0.28 deleterious(0) probably_damaging(0.999) TCGA-56-8304-01 6 97561719 97561719 T G KLHL32 Missense_Mutation p.Y230D 0.06 deleterious(0.02) possibly_damaging(0.505) TCGA-56-8304-01 7 100205690 100205690 C G PCOLCE Silent p.P438P 0.10 TCGA-56-8304-01 7 102760462 102760462 G A NAPEPLD Missense_Mutation p.S168F 0.13 deleterious(0) benign(0.217) TCGA-56-8304-01 7 106509348 106509348 G T PIK3CG Nonsense_Mutation p.E448* 0.33 TCGA-56-8304-01 7 107732120 107732120 T C LAMB4 Missense_Mutation p.Y551C 0.29 deleterious(0) probably_damaging(0.989) TCGA-56-8304-01 7 148975583 148975583 C T ZNF783 Missense_Mutation p.S256L 0.58 tolerated(0.25) benign(0.001) TCGA-56-8304-01 7 27134954 27134954 G A HOXA1 Missense_Mutation p.S193F 0.29 deleterious(0.01) probably_damaging(0.983) TCGA-56-8304-01 7 30536594 30536594 C G GGCT 3'UTR 0.27 TCGA-56-8304-01 7 31142929 31142929 T C ADCYAP1R1 Silent p.N403N 0.33 TCGA-56-8304-01 7 50611678 50611678 C A DDC Missense_Mutation p.G36W 0.27 deleterious(0) probably_damaging(1) TCGA-56-8304-01 7 55211016 55211016 G T EGFR Missense_Mutation p.G87C 0.35 deleterious(0) probably_damaging(1) TCGA-56-8304-01 7 82544565 82544565 C T PCLO Missense_Mutation p.R4246K 0.24 unknown(0) TCGA-56-8304-01 7 87797490 87797490 G - ADAM22 Frame_Shift_Del p.G744Afs*4 0.26 TCGA-56-8304-01 7 91630628 91630628 G A AKAP9 Missense_Mutation p.R466Q 0.25 benign(0.001) TCGA-56-8304-01 7 91714235 91714235 C - AKAP9 Frame_Shift_Del p.P2940Qfs*4 0.20 TCGA-56-8304-01 7 95157174 95157174 G A ASB4 Silent p.L179L 0.10 TCGA-56-8304-01 7 98449239 98449239 G C TMEM130 Missense_Mutation p.L271V 0.10 deleterious(0) probably_damaging(0.958) TCGA-56-8304-01 8 103664485 103664485 G T KLF10 Nonsense_Mutation p.Y59* 0.06 TCGA-56-8304-01 8 10470785 10470785 G T RP1L1 Missense_Mutation p.P275T 0.19 benign(0.064) TCGA-56-8304-01 8 113266480 113266480 A T CSMD3 Splice_Site p.X3370_splice 0.28 TCGA-56-8304-01 8 113421148 113421148 C A CSMD3 Nonsense_Mutation p.G1837* 0.31 TCGA-56-8304-01 8 116427093 116427093 T A TRPS1 Missense_Mutation p.S1015C 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.83) TCGA-56-8304-01 8 11995746 11995746 G A USP17L2 Missense_Mutation p.A175V 0.35 tolerated(0.08) benign(0.38) TCGA-56-8304-01 8 134042101 134042101 G A TG Missense_Mutation p.D2358N 0.25 deleterious(0) probably_damaging(0.998) TCGA-56-8304-01 8 28197007 28197007 G C PNOC Intron 0.32 TCGA-56-8304-01 8 38178643 38178643 C T WHSC1L1 Missense_Mutation p.E586K 0.23 tolerated(0.11) probably_damaging(0.998) TCGA-56-8304-01 8 41791687 41791687 A C KAT6A Missense_Mutation p.F1351V 0.04 unknown(0) TCGA-56-8304-01 8 72756053 72756053 G T MSC Missense_Mutation p.R121S 0.27 deleterious(0) probably_damaging(1) TCGA-56-8304-01 8 98656780 98656780 G A MTDH Missense_Mutation p.E16K 0.15 tolerated(0.17) benign(0.169) TCGA-56-8304-01 8 98711987 98711987 A G MTDH Missense_Mutation p.T352A 0.32 tolerated(0.08) benign(0.008) TCGA-56-8304-01 8 99135683 99135683 A T POP1 Nonsense_Mutation p.K40* 0.31 TCGA-56-8304-01 9 107602559 107602559 C A ABCA1 Splice_Site p.X352_splice 0.40 TCGA-56-8304-01 9 118950383 118950383 G T PAPPA Missense_Mutation p.V456L 0.36 tolerated(0.18) benign(0.097) TCGA-56-8304-01 9 131377986 131377986 G A SPTAN1 Missense_Mutation p.D1742N 0.22 deleterious(0.02) benign(0.003) TCGA-56-8304-01 9 136337263 136337265 GAA - SLC2A6 In_Frame_Del p.F468del 0.17 TCGA-56-8304-01 9 17466864 17466864 T C CNTLN Missense_Mutation p.V1277A 0.26 tolerated(0.06) benign(0.234) TCGA-56-8304-01 9 2648261 2648261 A T VLDLR Missense_Mutation p.S626C 0.20 deleterious(0.03) probably_damaging(1) TCGA-56-8304-01 9 32630423 32630423 C A TAF1L Missense_Mutation p.D1719Y 0.41 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-56-8304-01 9 5742965 5742965 G T KIAA1432 Missense_Mutation p.W333L 0.19 deleterious(0) probably_damaging(0.957) TCGA-56-8304-01 9 90344545 90344545 G C CTSL Missense_Mutation p.D227H 0.37 deleterious(0.04) benign(0.182) TCGA-56-8304-01 9 977090 977090 C A DMRT3 Missense_Mutation p.A30E 0.33 deleterious(0) probably_damaging(0.998) TCGA-56-8304-01 X 112021848 112021848 T A AMOT Missense_Mutation p.I1068F 0.31 possibly_damaging(0.46) TCGA-56-8304-01 X 128657285 128657285 G A SMARCA1 Silent p.I21I 0.26 TCGA-56-8304-01 X 144906011 144906011 C A SLITRK2 Missense_Mutation p.P690T 0.23 tolerated(1) possibly_damaging(0.889) TCGA-56-8304-01 X 147744008 147744008 G T AFF2 Missense_Mutation p.V254L 0.26 tolerated(0.25) benign(0.004) TCGA-56-8304-01 X 2407903 2407903 C T ZBED1 Silent p.V286V 0.30 TCGA-56-8304-01 X 24197583 24197583 A G ZFX Silent p.P114P 0.40 TCGA-56-8304-01 X 3002485 3002485 T A ARSF Missense_Mutation p.L203Q 0.36 deleterious(0) probably_damaging(0.983) TCGA-56-8304-01 X 70774429 70774429 C T OGT Missense_Mutation p.R239C 0.42 deleterious(0.05) probably_damaging(0.999) TCGA-56-8304-01 X 73963188 73963188 C T KIAA2022 Missense_Mutation p.D402N 0.29 tolerated(0.08) possibly_damaging(0.484) TCGA-56-8304-01 X 90691125 90691125 A G PABPC5 Silent p.P183P 0.18 TCGA-56-8305-01 10 11363246 11363246 C G CELF2 Silent p.T397T 0.39 TCGA-56-8305-01 10 114043558 114043558 A G TECTB Silent p.P22P 0.46 TCGA-56-8305-01 10 117027841 117027841 G T ATRNL1 Missense_Mutation p.A674S 0.44 tolerated(0.39) benign(0.035) TCGA-56-8305-01 10 124697228 124697228 C T C10orf88 Missense_Mutation p.G366S 0.42 tolerated(0.34) benign(0.426) TCGA-56-8305-01 10 17949576 17949576 C A MRC1L1 Missense_Mutation p.P1314T 0.35 benign(0.287) TCGA-56-8305-01 10 3155566 3155566 C T PFKP Silent p.T409T 0.39 TCGA-56-8305-01 10 38407401 38407401 G T ZNF37A Missense_Mutation p.C441F 0.39 deleterious(0) probably_damaging(0.999) TCGA-56-8305-01 10 56077126 56077126 A T PCDH15 Missense_Mutation p.L261M 0.44 tolerated(0.09) probably_damaging(0.993) TCGA-56-8305-01 10 61413998 61413998 T A SLC16A9 Silent p.T262T 0.49 TCGA-56-8305-01 10 63661985 63661985 A T ARID5B Missense_Mutation p.E30V 0.18 deleterious(0) probably_damaging(0.91) TCGA-56-8305-01 10 88260054 88260054 C A WAPAL Missense_Mutation p.D316Y 0.47 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-56-8305-01 11 1016480 1016480 G A MUC6 Silent p.I2107I 0.14 TCGA-56-8305-01 11 110124760 110124760 T C RDX Silent p.L290L 0.32 TCGA-56-8305-01 11 111385724 111385724 G C C11orf88 Missense_Mutation p.S72T 0.26 tolerated(0.41) benign(0.012) TCGA-56-8305-01 11 119044285 119044285 C T NLRX1 Silent p.V109V 0.25 TCGA-56-8305-01 11 119290137 119290137 G A THY1 Missense_Mutation p.T156M 0.24 tolerated(0.15) benign(0.009) TCGA-56-8305-01 11 121986275 121986275 C G BLID 3'UTR 0.20 TCGA-56-8305-01 11 123753930 123753930 G T TMEM225 Missense_Mutation p.A198E 0.27 tolerated(0.19) possibly_damaging(0.857) TCGA-56-8305-01 11 124179865 124179865 G T OR8D1 Missense_Mutation p.N266K 0.27 tolerated(0.14) benign(0.038) TCGA-56-8305-01 11 124310634 124310634 T A OR8B8 Silent p.S116S 0.29 TCGA-56-8305-01 11 124908342 124908342 A G CCDC15 Silent p.R809R 0.25 TCGA-56-8305-01 11 126144866 126144866 G T FOXRED1 Missense_Mutation p.R194L 0.35 deleterious(0) benign(0.048) TCGA-56-8305-01 11 134182734 134182734 G A GLB1L3 Missense_Mutation p.G485R 0.25 deleterious(0) probably_damaging(0.98) TCGA-56-8305-01 11 15267662 15267662 C A INSC 3'UTR 0.28 TCGA-56-8305-01 11 18956209 18956209 C T MRGPRX1 Silent p.G41G 0.26 TCGA-56-8305-01 11 2156724 2156724 C T IGF2 Silent p.L66L 0.36 TCGA-56-8305-01 11 22363133 22363133 C A SLC17A6 Missense_Mutation p.P49H 0.25 deleterious(0) probably_damaging(0.91) TCGA-56-8305-01 11 22363134 22363134 C A SLC17A6 Silent p.P49P 0.24 TCGA-56-8305-01 11 33309000 33309000 C T HIPK3 Missense_Mutation p.S347L 0.19 deleterious(0) probably_damaging(0.999) TCGA-56-8305-01 11 33581357 33581357 C A KIAA1549L Missense_Mutation p.S1009R 0.25 tolerated(0.12) probably_damaging(0.993) TCGA-56-8305-01 11 34979096 34979096 C T PDHX Missense_Mutation p.P170S 0.27 tolerated(0.17) benign(0.005) TCGA-56-8305-01 11 47374214 47374214 A C MYBPC3 5'UTR 0.25 TCGA-56-8305-01 11 48510653 48510653 C A OR4A47 Missense_Mutation p.H103Q 0.30 deleterious_low_confidence(0) probably_damaging(0.939) TCGA-56-8305-01 11 50003556 50003556 G C OR4C12 Missense_Mutation p.T161R 0.24 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-56-8305-01 11 5443997 5443997 G T OR51Q1 Silent p.L189L 0.29 TCGA-56-8305-01 11 55136055 55136055 A T OR4A15 Silent p.G232G 0.30 TCGA-56-8305-01 11 55433370 55433370 C A OR4C6 Missense_Mutation p.T243K 0.30 deleterious_low_confidence(0) possibly_damaging(0.887) TCGA-56-8305-01 11 55681547 55681547 G T OR5W2 Missense_Mutation p.S171Y 0.23 deleterious(0) possibly_damaging(0.802) TCGA-56-8305-01 11 55761332 55761332 T C OR5F1 Missense_Mutation p.Y257C 0.04 tolerated(0.11) benign(0.078) TCGA-56-8305-01 11 55761715 55761715 C A OR5F1 Silent p.P129P 0.30 TCGA-56-8305-01 11 55861205 55861205 C A OR8I2 Missense_Mutation p.S141Y 0.21 deleterious(0) benign(0.048) TCGA-56-8305-01 11 55905062 55905062 T C OR8J3 Missense_Mutation p.I45V 0.29 deleterious(0.03) benign(0.047) TCGA-56-8305-01 11 56258155 56258155 T A OR5M8 Missense_Mutation p.E231V 0.25 deleterious(0) possibly_damaging(0.772) TCGA-56-8305-01 11 57886176 57886176 A G OR9I1 Silent p.A247A 0.23 TCGA-56-8305-01 11 58605832 58605832 C A GLYATL2 Missense_Mutation p.A30S 0.24 tolerated(1) benign(0.302) TCGA-56-8305-01 11 60567331 60567331 C A MS4A10 Missense_Mutation p.D251E 0.36 tolerated_low_confidence(0.4) benign(0.002) TCGA-56-8305-01 11 60666015 60666015 T A PRPF19 Nonsense_Mutation p.K380* 0.24 TCGA-56-8305-01 11 61253833 61253833 G C PPP1R32 Missense_Mutation p.Q235H 0.20 tolerated(0.55) benign(0.435) TCGA-56-8305-01 11 61502347 61502347 G T DAGLA Missense_Mutation p.R334L 0.33 deleterious(0.02) benign(0.109) TCGA-56-8305-01 11 63137888 63137888 G T SLC22A9 Missense_Mutation p.W120C 0.28 deleterious(0) probably_damaging(1) TCGA-56-8305-01 11 65273111 65273111 C T MALAT1 RNA 0.32 TCGA-56-8305-01 11 65780966 65780966 T C CST6 3'UTR 0.50 TCGA-56-8305-01 11 76885894 76885894 C T MYO7A Silent p.Y676Y 0.41 TCGA-56-8305-01 11 76892478 76892478 A C MYO7A Missense_Mutation p.K916T 0.33 tolerated(0.35) possibly_damaging(0.686) TCGA-56-8305-01 11 89774486 89774486 G T TRIM49C Missense_Mutation p.G376V 0.15 deleterious(0) possibly_damaging(0.821) TCGA-56-8305-01 11 94231462 94231462 C T ANKRD49 Nonsense_Mutation p.Q162* 0.25 TCGA-56-8305-01 12 101433741 101433741 T A ANO4 Nonsense_Mutation p.Y267* 0.23 TCGA-56-8305-01 12 101696333 101696333 T A UTP20 Splice_Site p.X594_splice 0.27 TCGA-56-8305-01 12 108920068 108920068 G A SART3 Silent p.F726F 0.07 TCGA-56-8305-01 12 114837392 114837392 G - TBX5 Frame_Shift_Del p.T98Rfs*26 0.22 TCGA-56-8305-01 12 116446308 116446308 C G MED13L Missense_Mutation p.R637P 0.29 tolerated(0.06) unknown(0) TCGA-56-8305-01 12 123879755 123879755 G C SETD8 Missense_Mutation p.A151P 0.27 tolerated(0.1) benign(0.012) TCGA-56-8305-01 12 13761757 13761757 C T GRIN2B Missense_Mutation p.G597E 0.21 deleterious(0) probably_damaging(0.985) TCGA-56-8305-01 12 14849415 14849415 G C GUCY2C 5'UTR 0.43 TCGA-56-8305-01 12 14982390 14982390 C T ART4 Missense_Mutation p.S287N 0.24 tolerated(0.14) benign(0.022) TCGA-56-8305-01 12 18552759 18552759 G T PIK3C2G Missense_Mutation p.A724S 0.33 deleterious(0.02) probably_damaging(0.985) TCGA-56-8305-01 12 30783766 30783766 G A IPO8 3'UTR 0.35 TCGA-56-8305-01 12 40040261 40040261 C A C12orf40 Silent p.T111T 0.24 TCGA-56-8305-01 12 43826556 43826556 A T ADAMTS20 Missense_Mutation p.L927M 0.26 tolerated(0.06) possibly_damaging(0.692) TCGA-56-8305-01 12 46231177 46231177 G T ARID2 Missense_Mutation p.R366M 0.27 deleterious(0.03) possibly_damaging(0.797) TCGA-56-8305-01 12 49441779 49441784 TGAGAG C KMT2D Frame_Shift_Del p.C1400Wfs*30 0.25 TCGA-56-8305-01 12 52370296 52370296 C G ACVR1B Missense_Mutation p.L173V 0.22 tolerated(0.07) possibly_damaging(0.702) TCGA-56-8305-01 12 55038480 55038480 T A DCD 3'UTR 0.23 TCGA-56-8305-01 12 55759740 55759740 C A OR6C75 Silent p.L282L 0.25 TCGA-56-8305-01 12 56397793 56397793 A G SUOX Missense_Mutation p.Y207C 0.25 deleterious(0) possibly_damaging(0.894) TCGA-56-8305-01 12 58016639 58016639 A T SLC26A10 Silent p.A287A 0.25 TCGA-56-8305-01 12 58135708 58135708 C A AGAP2 5'Flank 0.26 TCGA-56-8305-01 12 66152250 66152250 A G RPSAP52 RNA 0.35 TCGA-56-8305-01 12 6657981 6657981 A G IFFO1 Missense_Mutation p.M364T 0.40 tolerated(1) benign(0.004) TCGA-56-8305-01 12 69080796 69080796 G C NUP107 5'UTR 0.22 TCGA-56-8305-01 12 6952550 6952550 C T GNB3 Silent p.S97S 0.17 TCGA-56-8305-01 12 70794092 70794092 C A KCNMB4 Missense_Mutation p.T147N 0.25 deleterious(0.02) possibly_damaging(0.486) TCGA-56-8305-01 12 70989999 70989999 T A PTPRB Missense_Mutation p.Q363L 0.19 tolerated(0.63) benign(0.015) TCGA-56-8305-01 12 71002912 71002912 C A PTPRB Nonsense_Mutation p.G306* 0.25 TCGA-56-8305-01 12 7480967 7480967 T C ACSM4 Nonstop_Mutation p.*581Qext*17 0.31 TCGA-56-8305-01 12 78225240 78225240 C T NAV3 5'UTR 0.23 TCGA-56-8305-01 12 78401144 78401144 C T NAV3 Missense_Mutation p.T609I 0.22 tolerated(0.14) benign(0.036) TCGA-56-8305-01 12 91449551 91449551 G T KERA Missense_Mutation p.L170I 0.23 deleterious(0.01) possibly_damaging(0.507) TCGA-56-8305-01 12 91449552 91449552 G T KERA Silent p.T169T 0.24 TCGA-56-8305-01 12 93100440 93100440 G T C12orf74 Silent p.V11V 0.25 TCGA-56-8305-01 12 9333644 9333644 C T PZP Missense_Mutation p.A592T 0.26 deleterious(0) probably_damaging(0.991) TCGA-56-8305-01 12 97147658 97147658 G A C12orf55 Missense_Mutation p.E2608K 0.31 deleterious(0) benign(0.001) TCGA-56-8305-01 13 101712240 101712240 G T NALCN Missense_Mutation p.P1612H 0.30 deleterious(0.02) possibly_damaging(0.709) TCGA-56-8305-01 13 109793525 109793525 C A MYO16 Silent p.P1633P 0.28 TCGA-56-8305-01 13 113893801 113893801 A G CUL4A Missense_Mutation p.Q324R 0.35 tolerated(0.29) benign(0.012) TCGA-56-8305-01 13 20641505 20641505 A G ZMYM2 Missense_Mutation p.Y1143C 0.29 deleterious(0.01) possibly_damaging(0.832) TCGA-56-8305-01 13 23913882 23913882 G A SACS Missense_Mutation p.P1378L 0.07 probably_damaging(0.999) TCGA-56-8305-01 13 28539120 28539120 C A CDX2 Missense_Mutation p.V192L 0.24 deleterious(0) benign(0.019) TCGA-56-8305-01 13 28539121 28539121 C A CDX2 Silent p.V191V 0.25 TCGA-56-8305-01 13 29599095 29599095 G T MTUS2 Missense_Mutation p.G97V 0.33 deleterious(0.01) benign(0.408) TCGA-56-8305-01 13 40293811 40293811 C G COG6 Silent p.V477V 0.26 TCGA-56-8305-01 13 40293857 40293857 G T COG6 Missense_Mutation p.G493C 0.32 deleterious(0.04) possibly_damaging(0.726) TCGA-56-8305-01 13 40293858 40293858 G T COG6 Missense_Mutation p.G493V 0.32 deleterious(0.04) benign(0.175) TCGA-56-8305-01 13 46952076 46952076 G T KIAA0226L 5'UTR 0.46 TCGA-56-8305-01 13 52857420 52857420 A G RP11-248G5.8 RNA 0.17 TCGA-56-8305-01 13 61068581 61068581 G C TDRD3 Missense_Mutation p.G244R 0.31 deleterious(0.04) probably_damaging(0.997) TCGA-56-8305-01 13 77760118 77760118 T C MYCBP2 Silent p.L1406L 0.36 TCGA-56-8305-01 13 78493537 78493537 G A EDNRB Nonsense_Mutation p.R72* 0.24 TCGA-56-8305-01 13 95095853 95095853 C G DCT Missense_Mutation p.W439C 0.25 deleterious(0) probably_damaging(0.999) TCGA-56-8305-01 14 106471540 106471540 G A IGHV1-3 Silent p.S19S 0.44 TCGA-56-8305-01 14 106757695 106757695 G T IGHV2-26 Silent p.T104T 0.17 TCGA-56-8305-01 14 19553741 19553741 T A POTEG Missense_Mutation p.C109S 0.06 deleterious(0.01) benign(0.014) TCGA-56-8305-01 14 20927457 20927457 T A TMEM55B Splice_Site p.X207_splice 0.19 TCGA-56-8305-01 14 23876271 23876271 C A MYH6 Silent p.R54R 0.16 TCGA-56-8305-01 14 26949242 26949242 T A NOVA1 Missense_Mutation p.T130S 0.16 tolerated(0.47) unknown(0) TCGA-56-8305-01 14 33290607 33290607 G T AKAP6 Splice_Site p.X1197_splice 0.23 TCGA-56-8305-01 14 47530584 47530584 A T MDGA2 Missense_Mutation p.S465T 0.13 tolerated(0.18) possibly_damaging(0.574) TCGA-56-8305-01 14 52793953 52793953 G T PTGER2 Missense_Mutation p.M286I 0.14 tolerated(0.79) benign(0.026) TCGA-56-8305-01 14 53150528 53150528 C T ERO1L Missense_Mutation p.S71N 0.13 tolerated(0.08) probably_damaging(0.999) TCGA-56-8305-01 14 68196020 68196020 G A RDH12 Silent p.T257T 0.34 TCGA-56-8305-01 14 90651205 90651205 T A KCNK13 Missense_Mutation p.I362N 0.36 deleterious(0) possibly_damaging(0.498) TCGA-56-8305-01 14 95922049 95922049 C A SYNE3 Missense_Mutation p.D268Y 0.34 deleterious(0) possibly_damaging(0.482) TCGA-56-8305-01 15 23811307 23811307 G T MKRN3 Missense_Mutation p.M126I 0.30 tolerated(0.4) benign(0.001) TCGA-56-8305-01 15 28499495 28499495 T G HERC2 Missense_Mutation p.Q1014P 0.21 possibly_damaging(0.622) TCGA-56-8305-01 15 34042220 34042220 G T RYR3 Missense_Mutation p.W2747L 0.33 probably_damaging(0.918) TCGA-56-8305-01 15 34042221 34042221 G T RYR3 Missense_Mutation p.W2747C 0.35 possibly_damaging(0.74) TCGA-56-8305-01 15 34640762 34640762 C T NUTM1 Silent p.R203R 0.10 TCGA-56-8305-01 15 52538209 52538209 C A MYO5C Silent p.L670L 0.10 TCGA-56-8305-01 15 65667625 65667625 G A IGDCC3 Silent p.I73I 0.13 TCGA-56-8305-01 15 66797567 66797567 A G ZWILCH 5'UTR 0.18 TCGA-56-8305-01 15 69548149 69548149 C T GLCE Missense_Mutation p.R2C 0.08 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-56-8305-01 15 82336931 82336931 C G MEX3B Missense_Mutation p.A94P 0.22 deleterious(0) probably_damaging(0.996) TCGA-56-8305-01 15 86123873 86123873 C T AKAP13 Silent p.H858H 0.08 TCGA-56-8305-01 15 86311541 86311541 T C KLHL25 Missense_Mutation p.T501A 0.17 deleterious(0.02) probably_damaging(0.992) TCGA-56-8305-01 16 1032259 1032259 G T SOX8 Missense_Mutation p.A113S 0.54 deleterious(0.01) probably_damaging(0.92) TCGA-56-8305-01 16 11439536 11439536 G T RMI2 Missense_Mutation p.G70C 0.25 deleterious(0.02) benign(0.443) TCGA-56-8305-01 16 1306620 1306620 G T TPSD1 Missense_Mutation p.W62C 0.40 deleterious(0) probably_damaging(1) TCGA-56-8305-01 16 18602524 18602524 C T ABCC6P1 RNA 0.36 TCGA-56-8305-01 16 19663363 19663363 C G C16orf62 Silent p.L813L 0.28 TCGA-56-8305-01 16 20480991 20480991 G T ACSM2A Silent p.L182L 0.23 TCGA-56-8305-01 16 31161016 31161016 C - PRSS36 Splice_Site p.X25_splice 0.22 TCGA-56-8305-01 16 31392253 31392253 C A ITGAX Missense_Mutation p.N1104K 0.28 deleterious(0) benign(0.115) TCGA-56-8305-01 16 48209329 48209329 C G ABCC11 Splice_Site p.X1180_splice 0.26 TCGA-56-8305-01 16 56933523 56933523 T A SLC12A3 Silent p.A914A 0.33 TCGA-56-8305-01 16 75665078 75665078 C A KARS Missense_Mutation p.R470S 0.33 deleterious(0) probably_damaging(0.999) TCGA-56-8305-01 16 76573631 76573631 G T CNTNAP4 Missense_Mutation p.R1006M 0.17 deleterious(0) probably_damaging(0.994) TCGA-56-8305-01 16 77355023 77355023 G C ADAMTS18 Missense_Mutation p.T747S 0.22 tolerated(0.13) benign(0.038) TCGA-56-8305-01 16 81253898 81253898 G C PKD1L2 Missense_Mutation p.S26R 0.28 tolerated(0.53) possibly_damaging(0.499) TCGA-56-8305-01 16 8891483 8891483 C A TMEM186 5'UTR 0.35 TCGA-56-8305-01 16 9858006 9858006 G T GRIN2A Missense_Mutation p.P1132Q 0.24 tolerated(0.89) benign(0.055) TCGA-56-8305-01 17 10439925 10439925 T C MYH2 Splice_Site p.X633_splice 0.17 TCGA-56-8305-01 17 15499942 15499942 C A RP11-385D13.1 Silent p.T840T 0.50 TCGA-56-8305-01 17 1552969 1552969 G A RILP Missense_Mutation p.R44C 0.18 deleterious(0.03) probably_damaging(0.99) TCGA-56-8305-01 17 16335120 16335120 G T TRPV2 Missense_Mutation p.R537L 0.58 deleterious(0) probably_damaging(0.965) TCGA-56-8305-01 17 17957509 17957509 C T GID4 Silent p.R189R 0.20 TCGA-56-8305-01 17 29657369 29657369 G T NF1 Nonsense_Mutation p.E1889* 0.43 TCGA-56-8305-01 17 3100841 3100841 T A OR1A2 Missense_Mutation p.L10Q 0.60 tolerated(0.07) benign(0.036) TCGA-56-8305-01 17 33768276 33768276 C A SLFN13 Missense_Mutation p.G678W 0.25 deleterious(0) probably_damaging(1) TCGA-56-8305-01 17 34398314 34398314 C A CCL18 Silent p.L61L 0.39 TCGA-56-8305-01 17 34398435 34398435 G T CCL18 3'UTR 0.14 TCGA-56-8305-01 17 38133298 38133298 C A GSDMA Missense_Mutation p.T442N 0.32 tolerated(0.07) benign(0.002) TCGA-56-8305-01 17 38556162 38556162 C T TOP2A Missense_Mutation p.R1053H 0.24 deleterious(0) probably_damaging(0.98) TCGA-56-8305-01 17 39383259 39383259 G A KRTAP9-2 Missense_Mutation p.R118K 0.36 tolerated(0.16) probably_damaging(0.994) TCGA-56-8305-01 17 39913678 39913678 C A JUP Missense_Mutation p.A679S 0.06 tolerated(0.49) benign(0) TCGA-56-8305-01 17 40317475 40317475 C G KCNH4 Missense_Mutation p.D693H 0.21 deleterious(0.03) benign(0.008) TCGA-56-8305-01 17 41168107 41168107 G T VAT1 Missense_Mutation p.L385M 0.20 deleterious(0) probably_damaging(0.994) TCGA-56-8305-01 17 42828616 42828616 G A DBF4B Missense_Mutation p.G615S 0.32 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-56-8305-01 17 43227410 43227410 C T HEXIM1 Nonsense_Mutation p.Q285* 0.19 TCGA-56-8305-01 17 47587838 47587838 C T NGFR Silent p.S211S 0.28 TCGA-56-8305-01 17 48773249 48773249 G A ANKRD40 3'UTR 0.14 TCGA-56-8305-01 17 48773339 48773339 G A ANKRD40 3'UTR 0.08 TCGA-56-8305-01 17 5366942 5366942 C A DHX33 Missense_Mutation p.Q119H 0.53 tolerated(0.09) possibly_damaging(0.827) TCGA-56-8305-01 17 56345338 56345338 G A LPO Missense_Mutation p.A708T 0.35 tolerated(0.29) benign(0.002) TCGA-56-8305-01 17 56769963 56769963 G T RAD51C 5'UTR 0.42 TCGA-56-8305-01 17 62290513 62290513 C G TEX2 Silent p.G355G 0.17 TCGA-56-8305-01 17 72960705 72960705 G A HID1 Missense_Mutation p.A30V 0.74 tolerated(0.18) benign(0.073) TCGA-56-8305-01 17 75484895 75484895 C T SEPT9 Missense_Mutation p.P404L 0.09 deleterious(0.01) probably_damaging(0.94) TCGA-56-8305-01 17 78445619 78445619 C G NPTX1 Missense_Mutation p.Q330H 0.53 deleterious(0) probably_damaging(0.987) TCGA-56-8305-01 17 7948606 7948606 C A ALOX15B Silent p.T300T 0.24 TCGA-56-8305-01 18 31318489 31318489 C G ASXL3 Missense_Mutation p.T374S 0.35 benign(0) TCGA-56-8305-01 18 32395891 32395891 G T DTNA Missense_Mutation p.G208C 0.35 deleterious(0.04) possibly_damaging(0.482) TCGA-56-8305-01 18 48333144 48333144 T A MRO Missense_Mutation p.D73V 0.38 deleterious(0) probably_damaging(0.995) TCGA-56-8305-01 18 61170774 61170774 C G SERPINB5 Nonsense_Mutation p.S316* 0.35 TCGA-56-8305-01 18 61463518 61463518 G A SERPINB7 Missense_Mutation p.E119K 0.40 tolerated(0.39) benign(0.062) TCGA-56-8305-01 19 11280769 11280769 C A KANK2 Silent p.G797G 0.30 TCGA-56-8305-01 19 17991756 17991756 C A SLC5A5 Missense_Mutation p.T351N 0.36 deleterious(0) probably_damaging(1) TCGA-56-8305-01 19 17991757 17991757 C A SLC5A5 Silent p.T351T 0.36 TCGA-56-8305-01 19 19407962 19407962 G A SUGP1 Missense_Mutation p.A360V 0.05 tolerated(0.43) benign(0.001) TCGA-56-8305-01 19 20011833 20011833 G T ZNF93 5'Flank 0.38 TCGA-56-8305-01 19 21477164 21477164 C A ZNF708 Missense_Mutation p.G202C 0.14 deleterious(0) probably_damaging(0.995) TCGA-56-8305-01 19 22154422 22154422 C T ZNF208 Silent p.E1138E 0.26 TCGA-56-8305-01 19 22940411 22940411 C - ZNF99 Frame_Shift_Del p.G767Afs*15 0.13 TCGA-56-8305-01 19 34718370 34718370 G C LSM14A 3'UTR 0.18 TCGA-56-8305-01 19 35510438 35510438 G C GRAMD1A Splice_Site p.X492_splice 0.28 TCGA-56-8305-01 19 35850518 35850518 C T FFAR3 Silent p.N242N 0.10 TCGA-56-8305-01 19 35996649 35996649 C A DMKN Missense_Mutation p.G369C 0.30 deleterious(0) unknown(0) TCGA-56-8305-01 19 36963870 36963870 C T ZNF566 Missense_Mutation p.E60K 0.34 deleterious(0.04) probably_damaging(0.98) TCGA-56-8305-01 19 38689154 38689154 G T SIPA1L3 Missense_Mutation p.A1656S 0.14 deleterious(0) probably_damaging(0.999) TCGA-56-8305-01 19 39125713 39125713 G A EIF3K Missense_Mutation p.E194K 0.30 tolerated(0.08) benign(0.112) TCGA-56-8305-01 19 39214857 39214857 G A ACTN4 Missense_Mutation p.E585K 0.26 tolerated(0.23) benign(0.006) TCGA-56-8305-01 19 39694670 39694670 G T SYCN Missense_Mutation p.N75K 0.23 deleterious(0.05) benign(0.031) TCGA-56-8305-01 19 40376718 40376718 T C FCGBP Missense_Mutation p.I3902V 0.14 benign(0.112) TCGA-56-8305-01 19 40900066 40900066 G A PRX Missense_Mutation p.A1398V 0.07 tolerated(0.07) benign(0.047) TCGA-56-8305-01 19 42729655 42729655 G T ZNF526 Missense_Mutation p.R367L 0.20 tolerated(0.29) probably_damaging(0.999) TCGA-56-8305-01 19 42753072 42753072 C A ERF Missense_Mutation p.G398C 0.24 deleterious_low_confidence(0) possibly_damaging(0.505) TCGA-56-8305-01 19 4338774 4338774 G T STAP2 5'UTR 0.26 TCGA-56-8305-01 19 44536101 44536101 C A ZNF222 Missense_Mutation p.Q132K 0.06 deleterious(0.02) possibly_damaging(0.516) TCGA-56-8305-01 19 44890645 44890645 C T ZNF285 Missense_Mutation p.E588K 0.04 deleterious_low_confidence(0) benign(0.219) TCGA-56-8305-01 19 44891004 44891004 C T ZNF285 Missense_Mutation p.S468N 0.05 tolerated(0.28) benign(0.006) TCGA-56-8305-01 19 44891197 44891197 C T ZNF285 Missense_Mutation p.E404K 0.04 tolerated(0.18) benign(0.103) TCGA-56-8305-01 19 44981677 44981677 T A ZNF180 Missense_Mutation p.T341S 0.34 tolerated(0.18) benign(0.055) TCGA-56-8305-01 19 46307688 46307688 G C RSPH6A Missense_Mutation p.T492R 0.11 deleterious(0) probably_damaging(0.999) TCGA-56-8305-01 19 49538884 49538884 G T CGB1 Missense_Mutation p.R151S 0.36 tolerated_low_confidence(0.08) unknown(0) TCGA-56-8305-01 19 51447042 51447042 C G KLK5 Missense_Mutation p.G243R 0.24 deleterious(0) probably_damaging(0.998) TCGA-56-8305-01 19 51582721 51582721 T C KLK14 Missense_Mutation p.I167V 0.07 tolerated(0.18) benign(0.063) TCGA-56-8305-01 19 52376150 52376150 G A ZNF577 Missense_Mutation p.H365Y 0.12 tolerated(1) possibly_damaging(0.492) TCGA-56-8305-01 19 54401733 54401733 G A PRKCG Missense_Mutation p.A378T 0.17 deleterious(0) probably_damaging(0.983) TCGA-56-8305-01 19 56114090 56114090 G T ZNF524 Silent p.R204R 0.35 TCGA-56-8305-01 19 56369165 56369165 G T NLRP4 Missense_Mutation p.D136Y 0.17 deleterious(0) benign(0.042) TCGA-56-8305-01 19 57803254 57803254 G T ZNF460 Missense_Mutation p.V449L 0.25 deleterious(0) benign(0.138) TCGA-56-8305-01 19 58388311 58388311 C A ZNF814 Nonsense_Mutation p.E46* 0.13 TCGA-56-8305-01 19 58564970 58564970 C A ZSCAN1 Missense_Mutation p.R260S 0.34 tolerated(0.73) benign(0.022) TCGA-56-8305-01 19 58639350 58639350 C A ZNF329 Missense_Mutation p.R507S 0.25 deleterious(0.02) benign(0.191) TCGA-56-8305-01 19 6389601 6389601 C A GTF2F1 Missense_Mutation p.E60D 0.31 tolerated(0.07) probably_damaging(0.941) TCGA-56-8305-01 19 7593102 7593102 C - MCOLN1 Frame_Shift_Del p.H280Tfs*92 0.11 TCGA-56-8305-01 19 810827 810827 G C PTBP1 3'UTR 0.35 TCGA-56-8305-01 19 9083038 9083038 G C MUC16 Missense_Mutation p.S2926C 0.31 unknown(0) TCGA-56-8305-01 1 111892823 111892823 A G PIFO Missense_Mutation p.Q162R 0.15 tolerated(0.26) possibly_damaging(0.76) TCGA-56-8305-01 1 114226025 114226025 T C MAGI3 Missense_Mutation p.C1279R 0.14 tolerated_low_confidence(0.3) benign(0.001) TCGA-56-8305-01 1 116243764 116243764 G C CASQ2 3'UTR 0.11 TCGA-56-8305-01 1 12198298 12198298 G T TNFRSF8 Missense_Mutation p.G450C 0.27 tolerated(0.16) benign(0.009) TCGA-56-8305-01 1 144881459 144881459 T A PDE4DIP Missense_Mutation p.N1246I 0.21 deleterious(0.01) possibly_damaging(0.851) TCGA-56-8305-01 1 145293520 145293520 A G NBPF10 Missense_Mutation p.K39E 0.10 benign(0.261) TCGA-56-8305-01 1 145528586 145528586 G T ITGA10 Missense_Mutation p.W128L 0.15 deleterious(0) possibly_damaging(0.507) TCGA-56-8305-01 1 145528587 145528587 G T ITGA10 Missense_Mutation p.W128C 0.15 deleterious(0) probably_damaging(0.95) TCGA-56-8305-01 1 153737196 153737196 G A INTS3 Silent p.L652L 0.47 TCGA-56-8305-01 1 153932811 153932811 G A SLC39A1 Silent p.F246F 0.43 TCGA-56-8305-01 1 153932813 153932813 A G SLC39A1 Missense_Mutation p.F246L 0.42 deleterious(0.01) probably_damaging(0.971) TCGA-56-8305-01 1 155735636 155735636 C A GON4L Missense_Mutation p.G1210C 0.12 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-56-8305-01 1 156281833 156281834 GA - CCT3 Frame_Shift_Del p.S385Gfs*91 0.18 TCGA-56-8305-01 1 157666189 157666189 T A FCRL3 Intron 0.47 TCGA-56-8305-01 1 158227220 158227220 G C CD1A Missense_Mutation p.S298T 0.17 tolerated(0.63) benign(0.057) TCGA-56-8305-01 1 158669611 158669611 C A OR6K2 Missense_Mutation p.A278S 0.35 tolerated(0.23) benign(0.023) TCGA-56-8305-01 1 158911793 158911793 C A PYHIN1 Missense_Mutation p.H202Q 0.48 tolerated(1) benign(0) TCGA-56-8305-01 1 159409697 159409697 T A OR10J1 Nonsense_Mutation p.L50* 0.41 TCGA-56-8305-01 1 160969458 160969458 C A F11R Missense_Mutation p.W258C 0.37 deleterious(0) probably_damaging(1) TCGA-56-8305-01 1 176926925 176926925 C A ASTN1 Missense_Mutation p.E592D 0.31 tolerated(0.31) possibly_damaging(0.58) TCGA-56-8305-01 1 179562807 179562807 C G TDRD5 Missense_Mutation p.L149V 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-56-8305-01 1 179869277 179869277 A G TOR1AIP1 Silent p.Q209Q 0.18 TCGA-56-8305-01 1 201197590 201197590 C A IGFN1 3'UTR 0.21 TCGA-56-8305-01 1 203188907 203188907 T A CHIT1 Missense_Mutation p.Y267F 0.24 deleterious(0.02) probably_damaging(1) TCGA-56-8305-01 1 205898379 205898379 G T SLC26A9 Missense_Mutation p.R275S 0.19 deleterious(0.02) benign(0.168) TCGA-56-8305-01 1 217856661 217856661 A T SPATA17 Missense_Mutation p.K118I 0.19 deleterious(0) probably_damaging(0.976) TCGA-56-8305-01 1 22846666 22846666 G T ZBTB40 Silent p.T982T 0.40 TCGA-56-8305-01 1 22920169 22920170 - G EPHA8 Frame_Shift_Ins p.K533Efs*7 0.40 TCGA-56-8305-01 1 237754292 237754292 G T RYR2 Missense_Mutation p.R1387I 0.37 benign(0.01) TCGA-56-8305-01 1 237837481 237837481 C G RYR2 Missense_Mutation p.I2892M 0.43 probably_damaging(0.937) TCGA-56-8305-01 1 237947947 237947947 T A RYR2 Missense_Mutation p.L4312Q 0.25 benign(0.144) TCGA-56-8305-01 1 241667487 241667487 C A FH Silent p.L321L 0.44 TCGA-56-8305-01 1 24700257 24700257 C G STPG1 Missense_Mutation p.R169P 0.19 deleterious(0.02) possibly_damaging(0.637) TCGA-56-8305-01 1 248263582 248263582 G T OR2L13 Missense_Mutation p.R302I 0.12 deleterious(0) probably_damaging(0.999) TCGA-56-8305-01 1 248512685 248512685 G A OR14C36 Silent p.G203G 0.09 TCGA-56-8305-01 1 3329143 3329143 C T PRDM16 Silent p.A794A 0.17 TCGA-56-8305-01 1 34330203 34330203 G T HMGB4 Silent p.L137L 0.32 TCGA-56-8305-01 1 3551567 3551567 G A WRAP73 Silent p.P270P 0.31 TCGA-56-8305-01 1 67816766 67816766 G A IL12RB2 Missense_Mutation p.E418K 0.24 tolerated(0.29) benign(0.017) TCGA-56-8305-01 1 89279305 89279305 T A PKN2 Missense_Mutation p.L723H 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-56-8305-01 1 89732772 89732772 C G GBP5 Missense_Mutation p.D165H 0.17 deleterious(0) probably_damaging(0.936) TCGA-56-8305-01 1 91182144 91182144 G T BARHL2 Missense_Mutation p.S203R 0.22 deleterious(0.02) unknown(0) TCGA-56-8305-01 1 94654429 94654429 C A ARHGAP29 Nonsense_Mutation p.E549* 0.14 TCGA-56-8305-01 1 99418838 99418838 C T LPPR5 Missense_Mutation p.V137I 0.14 tolerated(0.09) probably_damaging(0.998) TCGA-56-8305-01 20 18448105 18448105 G T POLR3F 5'UTR 0.38 TCGA-56-8305-01 20 29992804 29992804 G T DEFB121 Missense_Mutation p.A48D 0.28 tolerated(0.64) probably_damaging(0.975) TCGA-56-8305-01 20 31622662 31622662 C T BPIFB6 Silent p.F132F 0.21 TCGA-56-8305-01 20 3678520 3678520 C A SIGLEC1 Nonsense_Mutation p.E683* 0.26 TCGA-56-8305-01 20 36845697 36845697 C G KIAA1755 Silent p.T953T 0.23 TCGA-56-8305-01 20 36954772 36954772 G T BPI Missense_Mutation p.D371Y 0.39 deleterious(0) probably_damaging(0.983) TCGA-56-8305-01 20 42788292 42788292 T C JPH2 Missense_Mutation p.I379V 0.38 tolerated(0.06) possibly_damaging(0.868) TCGA-56-8305-01 20 43547570 43547570 G T PABPC1L Missense_Mutation p.R176L 0.31 deleterious(0.02) benign(0.299) TCGA-56-8305-01 20 43927002 43927002 C A MATN4 Missense_Mutation p.V412F 0.35 probably_damaging(0.997) TCGA-56-8305-01 20 56190040 56190040 C T ZBP1 Silent p.R135R 0.28 TCGA-56-8305-01 20 61391626 61391626 C A NTSR1 3'UTR 0.30 TCGA-56-8305-01 21 15599360 15599360 G T RBM11 Missense_Mutation p.D198Y 0.23 deleterious_low_confidence(0) unknown(0) TCGA-56-8305-01 21 30411887 30411887 C T USP16 Nonsense_Mutation p.Q317* 0.11 TCGA-56-8305-01 21 34053853 34053853 T A SYNJ1 Missense_Mutation p.I475F 0.22 deleterious(0) possibly_damaging(0.787) TCGA-56-8305-01 21 35093543 35093543 A G ITSN1 Missense_Mutation p.H30R 0.20 tolerated(0.12) unknown(0) TCGA-56-8305-01 21 38126686 38126686 C A HLCS Missense_Mutation p.G681V 0.26 deleterious(0) probably_damaging(1) TCGA-56-8305-01 22 16279302 16279302 C A POTEH Splice_Site p.X308_splice 0.03 TCGA-56-8305-01 22 16449698 16449698 C A OR11H1 Missense_Mutation p.W36L 0.04 tolerated(0.14) benign(0.002) TCGA-56-8305-01 22 18020424 18020424 C A CECR2 Silent p.R586R 0.25 TCGA-56-8305-01 22 18846067 18846067 C A BCRP7 RNA 0.08 TCGA-56-8305-01 22 21332042 21332042 C A AIFM3 Silent p.R446R 0.29 TCGA-56-8305-01 22 22681970 22681970 G T IGLV1-50 Missense_Mutation p.G51V 0.27 deleterious_low_confidence(0) benign(0.015) TCGA-56-8305-01 22 22843290 22843290 A G ZNF280B Missense_Mutation p.L145S 0.31 tolerated(0.09) probably_damaging(0.961) TCGA-56-8305-01 22 22989547 22989547 C T GGTLC2 Intron 0.15 TCGA-56-8305-01 22 24483574 24483574 G T CABIN1 Nonsense_Mutation p.E1145* 0.27 TCGA-56-8305-01 22 26342196 26342196 A G MYO18B Missense_Mutation p.M1871V 0.33 tolerated(0.6) benign(0.002) TCGA-56-8305-01 22 30736218 30736218 C A SF3A1 Nonsense_Mutation p.E448* 0.27 TCGA-56-8305-01 22 32635064 32635064 G A SLC5A4 Missense_Mutation p.A164V 0.38 deleterious(0) benign(0.099) TCGA-56-8305-01 22 41265058 41265058 G T XPNPEP3 Missense_Mutation p.R40S 0.27 tolerated(0.2) benign(0.004) TCGA-56-8305-01 22 42998104 42998104 C A POLDIP3 Intron 0.35 TCGA-56-8305-01 2 100916254 100916254 C T LONRF2 Missense_Mutation p.G398S 0.35 tolerated(0.38) benign(0.07) TCGA-56-8305-01 2 124999911 124999911 C A CNTNAP5 Missense_Mutation p.L108M 0.34 tolerated(0.05) probably_damaging(0.969) TCGA-56-8305-01 2 130877803 130877803 T C POTEF Missense_Mutation p.N96D 0.41 deleterious_low_confidence(0.03) benign(0.009) TCGA-56-8305-01 2 131981232 131981232 A G POTEE Silent p.R195R 0.36 TCGA-56-8305-01 2 132021789 132021789 C A POTEE Missense_Mutation p.L921M 0.16 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-56-8305-01 2 143790890 143790890 G A KYNU Silent p.E347E 0.13 TCGA-56-8305-01 2 145157480 145157480 G T ZEB2 Missense_Mutation p.P425H 0.18 deleterious(0) probably_damaging(0.999) TCGA-56-8305-01 2 1544411 1544411 C A TPO Silent p.G888G 0.18 TCGA-56-8305-01 2 155265537 155265537 C G GALNT13 Silent p.G446G 0.17 TCGA-56-8305-01 2 163070448 163070448 C A FAP Missense_Mutation p.K334N 0.13 tolerated(0.27) benign(0.013) TCGA-56-8305-01 2 166789500 166789500 C T TTC21B Missense_Mutation p.E260K 0.15 deleterious(0.01) possibly_damaging(0.821) TCGA-56-8305-01 2 167334144 167334144 T A SCN7A Silent p.I21I 0.23 TCGA-56-8305-01 2 169938075 169938076 CA - DHRS9 5'UTR 0.28 TCGA-56-8305-01 2 170507028 170507028 A G CCDC173 Silent p.L321L 0.27 TCGA-56-8305-01 2 175939487 175939487 C A ATF2 Silent p.S456S 0.48 TCGA-56-8305-01 2 178098861 178098920 GTTGTTCTTGTCTTTCCTTTTCAAGTTTTTTCTGTTTTTCCAGCTCATACTCTTTCCGTC - NFE2L2 In_Frame_Del p.R42_Q61del 0.27 TCGA-56-8305-01 2 179537394 179537394 G T TTN Missense_Mutation p.P11608H 0.20 TCGA-56-8305-01 2 179537395 179537395 G T TTN Missense_Mutation p.P11608T 0.20 TCGA-56-8305-01 2 179582251 179582251 T A TTN Silent p.S8450S 0.13 TCGA-56-8305-01 2 182780541 182780541 A T SSFA2 Missense_Mutation p.Y725F 0.39 tolerated(0.46) probably_damaging(0.998) TCGA-56-8305-01 2 190728685 190728685 T C PMS1 Silent p.S691S 0.16 TCGA-56-8305-01 2 201997771 201997771 G T CFLAR Missense_Mutation p.G101C 0.47 deleterious(0) possibly_damaging(0.791) TCGA-56-8305-01 2 212251668 212251668 C A ERBB4 Missense_Mutation p.D1131Y 0.14 deleterious(0) probably_damaging(1) TCGA-56-8305-01 2 219679681 219679681 G T CYP27A1 Missense_Mutation p.L508F 0.47 deleterious(0) benign(0.141) TCGA-56-8305-01 2 220473302 220473302 C T STK11IP Intron 0.25 TCGA-56-8305-01 2 239049615 239049615 G T KLHL30 Missense_Mutation p.V74L 0.56 deleterious(0.02) probably_damaging(1) TCGA-56-8305-01 2 31189140 31189140 G A GALNT14 Missense_Mutation p.L115F 0.29 deleterious(0.01) probably_damaging(0.995) TCGA-56-8305-01 2 46412067 46412067 G A PRKCE 3'UTR 0.19 TCGA-56-8305-01 2 48941152 48941152 G T LHCGR Missense_Mutation p.A193E 0.17 deleterious(0.01) probably_damaging(0.99) TCGA-56-8305-01 2 58388748 58388748 C G FANCL Missense_Mutation p.C315S 0.20 deleterious(0) probably_damaging(1) TCGA-56-8305-01 2 64111216 64111216 C T UGP2 Silent p.F188F 0.06 TCGA-56-8305-01 2 79349148 79349148 T C REG1A Missense_Mutation p.V73A 0.34 tolerated(0.1) probably_damaging(0.916) TCGA-56-8305-01 2 85097542 85097542 T C TRABD2A Missense_Mutation p.N159S 0.39 deleterious(0.01) possibly_damaging(0.886) TCGA-56-8305-01 2 89265919 89265919 A G IGKV1-6 Silent p.Y71Y 0.22 TCGA-56-8305-01 3 102196419 102196419 C A ZPLD1 Missense_Mutation p.T418K 0.16 tolerated_low_confidence(0.83) benign(0.047) TCGA-56-8305-01 3 107493630 107493630 G T BBX Missense_Mutation p.W660C 0.26 deleterious(0.04) possibly_damaging(0.653) TCGA-56-8305-01 3 108189561 108189561 C A MYH15 Missense_Mutation p.G476V 0.34 deleterious(0) probably_damaging(1) TCGA-56-8305-01 3 108189562 108189562 C A MYH15 Missense_Mutation p.G476C 0.34 deleterious(0) probably_damaging(1) TCGA-56-8305-01 3 121097729 121097729 A T STXBP5L Silent p.T805T 0.18 TCGA-56-8305-01 3 121410449 121410449 T A GOLGB1 Missense_Mutation p.N2588Y 0.41 benign(0.284) TCGA-56-8305-01 3 122215306 122215306 C T KPNA1 Missense_Mutation p.R36Q 0.26 deleterious(0) probably_damaging(0.993) TCGA-56-8305-01 3 123003527 123003527 C A ADCY5 Silent p.R1238R 0.48 TCGA-56-8305-01 3 123634101 123634101 C A CCDC14 Missense_Mutation p.R755I 0.19 deleterious(0) possibly_damaging(0.883) TCGA-56-8305-01 3 130454761 130454762 - A PIK3R4 Frame_Shift_Ins p.E275* 0.25 TCGA-56-8305-01 3 133119052 133119052 C T BFSP2 Missense_Mutation p.S42F 0.12 deleterious(0.01) possibly_damaging(0.873) TCGA-56-8305-01 3 135870386 135870386 C A MSL2 Missense_Mutation p.G446V 0.45 tolerated(0.12) probably_damaging(0.965) TCGA-56-8305-01 3 135870387 135870387 C A MSL2 Nonsense_Mutation p.G446* 0.45 TCGA-56-8305-01 3 140409869 140409869 C A TRIM42 Silent p.V640V 0.31 TCGA-56-8305-01 3 140785534 140785534 C A SPSB4 Nonsense_Mutation p.Y196* 0.15 TCGA-56-8305-01 3 151599076 151599076 C T SUCNR1 Missense_Mutation p.H249Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-56-8305-01 3 152553917 152553917 G T P2RY1 Missense_Mutation p.D116Y 0.18 deleterious(0.05) probably_damaging(0.947) TCGA-56-8305-01 3 16646780 16646780 C A DAZL 5'Flank 0.35 TCGA-56-8305-01 3 172480315 172480315 G T ECT2 Nonsense_Mutation p.E290* 0.32 TCGA-56-8305-01 3 173993267 173993267 T A NLGN1 Missense_Mutation p.L270Q 0.44 deleterious(0) probably_damaging(1) TCGA-56-8305-01 3 180349370 180349370 G C CCDC39 Missense_Mutation p.R629G 0.54 tolerated(0.06) benign(0) TCGA-56-8305-01 3 183639072 183639072 C T ABCC5 3'UTR 0.26 TCGA-56-8305-01 3 184076522 184076522 G T CLCN2 Silent p.L100L 0.28 TCGA-56-8305-01 3 186938000 186938000 C G MASP1 Silent p.L653L 0.08 TCGA-56-8305-01 3 190338084 190338084 T - IL1RAP Frame_Shift_Del p.F187Lfs*4 0.32 TCGA-56-8305-01 3 195477910 195477910 G A MUC4 Missense_Mutation p.R5241W 0.27 possibly_damaging(0.527) TCGA-56-8305-01 3 195778931 195778931 T C TFRC Missense_Mutation p.N722S 0.17 tolerated(0.21) benign(0.018) TCGA-56-8305-01 3 196754761 196754761 G A MFI2 Missense_Mutation p.R24W 0.30 deleterious(0) probably_damaging(0.996) TCGA-56-8305-01 3 32031563 32031563 G A ZNF860 Missense_Mutation p.R331K 0.45 tolerated(0.96) possibly_damaging(0.463) TCGA-56-8305-01 3 47889732 47889732 G A DHX30 Silent p.A783A 0.06 TCGA-56-8305-01 3 7494404 7494404 C T GRM7 Missense_Mutation p.L429F 0.10 deleterious(0.02) benign(0.034) TCGA-56-8305-01 4 100260825 100260825 C T ADH1C Missense_Mutation p.A338T 0.30 benign(0.056) TCGA-56-8305-01 4 100512496 100512496 G T MTTP Silent p.T202T 0.25 TCGA-56-8305-01 4 104640857 104640857 C A TACR3 5'UTR 0.29 TCGA-56-8305-01 4 138442228 138442228 C A PCDH18 Silent p.L1121L 0.05 TCGA-56-8305-01 4 166976382 166976382 G A TLL1 Missense_Mutation p.G560E 0.36 tolerated(0.05) benign(0.442) TCGA-56-8305-01 4 169317137 169317137 G A DDX60L Silent p.H1210H 0.34 TCGA-56-8305-01 4 189065256 189065256 G T TRIML1 Silent p.T275T 0.30 TCGA-56-8305-01 4 20550695 20550695 C A SLIT2 Missense_Mutation p.N811K 0.22 deleterious(0) probably_damaging(0.953) TCGA-56-8305-01 4 3240543 3240543 A T HTT Splice_Site p.X3019_splice 0.18 TCGA-56-8305-01 4 48496176 48496176 G A ZAR1 Missense_Mutation p.R397Q 0.28 deleterious(0) probably_damaging(0.998) TCGA-56-8305-01 4 55561742 55561742 A T KIT Silent p.S44S 0.21 TCGA-56-8305-01 4 5624483 5624483 T A EVC2 Missense_Mutation p.Q761L 0.30 deleterious(0) probably_damaging(0.996) TCGA-56-8305-01 4 8229256 8229256 G A SH3TC1 Missense_Mutation p.R612Q 0.30 deleterious(0) benign(0.257) TCGA-56-8305-01 5 112178040 112178040 G T APC Missense_Mutation p.G2250V 0.46 benign(0.031) TCGA-56-8305-01 5 133643956 133643956 T C CDKL3 Missense_Mutation p.T413A 0.43 tolerated(0.38) benign(0.001) TCGA-56-8305-01 5 140167108 140167108 C A PCDHA1 Missense_Mutation p.S411R 0.47 deleterious_low_confidence(0.04) benign(0.068) TCGA-56-8305-01 5 140347456 140347456 G T PCDHAC2 Missense_Mutation p.D369Y 0.48 deleterious(0) possibly_damaging(0.615) TCGA-56-8305-01 5 140724185 140724185 G T PCDHGA3 Silent p.V195V 0.38 TCGA-56-8305-01 5 140739939 140739939 A T PCDHGB2 Silent p.P79P 0.41 TCGA-56-8305-01 5 156589512 156589512 G A FAM71B Silent p.G588G 0.44 TCGA-56-8305-01 5 160097628 160097628 C A ATP10B Nonsense_Mutation p.G173* 0.35 TCGA-56-8305-01 5 161113953 161113953 G A GABRA6 Missense_Mutation p.E57K 0.39 tolerated(0.12) probably_damaging(0.998) TCGA-56-8305-01 5 177031489 177031489 C T B4GALT7 Silent p.S120S 0.33 TCGA-56-8305-01 5 24487725 24487725 A T CDH10 3'UTR 0.21 TCGA-56-8305-01 5 24488218 24488218 C A CDH10 Nonsense_Mutation p.E641* 0.49 TCGA-56-8305-01 5 24535227 24535227 G A CDH10 Missense_Mutation p.P270S 0.34 tolerated(0.18) benign(0.001) TCGA-56-8305-01 5 24535228 24535228 G A CDH10 Silent p.F269F 0.36 TCGA-56-8305-01 5 24535856 24535856 C G CDH10 Missense_Mutation p.S201T 0.44 tolerated(0.07) benign(0.019) TCGA-56-8305-01 5 38407193 38407193 G T EGFLAM Missense_Mutation p.W364C 0.41 tolerated(0.15) possibly_damaging(0.571) TCGA-56-8305-01 5 5239802 5239802 C A ADAMTS16 Missense_Mutation p.H763N 0.16 tolerated(0.33) benign(0.103) TCGA-56-8305-01 5 72864343 72864343 G A UTP15 Silent p.L94L 0.40 TCGA-56-8305-01 5 7873565 7873565 G T MTRR Missense_Mutation p.R97L 0.22 tolerated(1) benign(0.069) TCGA-56-8305-01 5 85578483 85578483 C G NBPF22P RNA 0.38 TCGA-56-8305-01 5 9119211 9119211 G A SEMA5A Silent p.S608S 0.17 TCGA-56-8305-01 6 110777921 110777921 C G SLC22A16 Missense_Mutation p.G118A 0.34 deleterious(0) probably_damaging(0.914) TCGA-56-8305-01 6 125330336 125330336 T G RNF217 5'UTR 0.06 TCGA-56-8305-01 6 132892004 132892004 G T TAAR6 Missense_Mutation p.D182Y 0.27 deleterious(0.01) benign(0.018) TCGA-56-8305-01 6 133783597 133783597 T C EYA4 Missense_Mutation p.Y188H 0.35 deleterious(0) probably_damaging(0.999) TCGA-56-8305-01 6 134312276 134312278 AGA - SLC2A12 3'UTR 0.29 TCGA-56-8305-01 6 139262623 139262623 T A REPS1 Missense_Mutation p.E328D 0.03 deleterious(0) probably_damaging(0.982) TCGA-56-8305-01 6 147680333 147680333 A G STXBP5 Missense_Mutation p.T807A 0.24 tolerated(0.25) benign(0) TCGA-56-8305-01 6 152576726 152576726 C A SYNE1 Missense_Mutation p.E6420D 0.20 benign(0.42) TCGA-56-8305-01 6 165706764 165706764 T C C6orf118 Intron 0.24 TCGA-56-8305-01 6 166743077 166743077 C T SFT2D1 Missense_Mutation p.G51R 0.05 deleterious(0.03) possibly_damaging(0.752) TCGA-56-8305-01 6 169642019 169642019 C G THBS2 Silent p.T243T 0.34 TCGA-56-8305-01 6 26217324 26217324 C T HIST1H2AE Missense_Mutation p.S41F 0.12 deleterious_low_confidence(0) benign(0.041) TCGA-56-8305-01 6 28963602 28963602 C G ZNF311 Missense_Mutation p.G393R 0.26 deleterious(0) probably_damaging(0.91) TCGA-56-8305-01 6 28963791 28963791 G C ZNF311 Missense_Mutation p.P330A 0.34 deleterious(0.02) benign(0.331) TCGA-56-8305-01 6 31118261 31118261 C T CCHCR1 Missense_Mutation p.A395T 0.08 tolerated(0.57) benign(0.014) TCGA-56-8305-01 6 32172007 32172007 C T NOTCH4 Missense_Mutation p.E1009K 0.07 deleterious(0) probably_damaging(0.994) TCGA-56-8305-01 6 32974505 32974505 A G HLA-DOA 3'UTR 0.25 TCGA-56-8305-01 6 33264089 33264089 C A RGL2 Missense_Mutation p.V162L 0.27 tolerated(0.2) possibly_damaging(0.759) TCGA-56-8305-01 6 41196559 41196559 G C TREML4 Missense_Mutation p.Q57H 0.24 deleterious(0) probably_damaging(0.989) TCGA-56-8305-01 6 41771566 41771566 G C USP49 Missense_Mutation p.I513M 0.22 deleterious(0) possibly_damaging(0.867) TCGA-56-8305-01 6 49580192 49580192 T C RHAG Missense_Mutation p.D288G 0.28 deleterious(0.01) probably_damaging(0.96) TCGA-56-8305-01 6 52054045 52054045 C A IL17A Silent p.S141S 0.26 TCGA-56-8305-01 6 56857332 56857332 C A BEND6 Missense_Mutation p.Q93K 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.678) TCGA-56-8305-01 6 66063440 66063440 T C EYS Missense_Mutation p.H457R 0.28 tolerated(0.37) benign(0.007) TCGA-56-8305-01 6 7559600 7559600 C T DSP Silent p.T188T 0.31 TCGA-56-8305-01 6 76024597 76024597 C T FILIP1 Missense_Mutation p.M317I 0.23 tolerated(0.23) benign(0.073) TCGA-56-8305-01 6 84834902 84834902 C A KIAA1009 Nonsense_Mutation p.E1367* 0.29 TCGA-56-8305-01 7 100780315 100780315 A T SERPINE1 Missense_Mutation p.E374V 0.46 deleterious(0.02) probably_damaging(0.909) TCGA-56-8305-01 7 101845059 101845059 G T CUX1 Missense_Mutation p.V839L 0.60 tolerated(0.09) unknown(0) TCGA-56-8305-01 7 105656455 105656455 G A CDHR3 Silent p.V470V 0.40 TCGA-56-8305-01 7 11500371 11500371 G C THSD7A Silent p.R841R 0.28 TCGA-56-8305-01 7 122768956 122768956 A G SLC13A1 Missense_Mutation p.L359P 0.36 deleterious(0) probably_damaging(0.991) TCGA-56-8305-01 7 132192549 132192549 G T PLXNA4 Missense_Mutation p.R302S 0.40 tolerated(0.5) benign(0.024) TCGA-56-8305-01 7 137237147 137237147 G T DGKI Missense_Mutation p.S705R 0.42 tolerated(0.48) probably_damaging(0.997) TCGA-56-8305-01 7 14789761 14789761 G A DGKB Intron 0.07 TCGA-56-8305-01 7 15458248 15458248 G T AGMO Missense_Mutation p.P182T 0.22 deleterious(0) probably_damaging(0.986) TCGA-56-8305-01 7 154862693 154862693 C A HTR5A Missense_Mutation p.D28E 0.06 tolerated(0.95) benign(0.001) TCGA-56-8305-01 7 154862792 154862792 G T HTR5A-AS1 Missense_Mutation p.S74R 0.29 tolerated_low_confidence(0.1) possibly_damaging(0.504) TCGA-56-8305-01 7 2632674 2632674 C T IQCE Silent p.L421L 0.26 TCGA-56-8305-01 7 2946213 2946213 G A CARD11 3'UTR 0.26 TCGA-56-8305-01 7 35912369 35912369 A T SEPT7 Missense_Mutation p.S125C 0.34 deleterious(0.04) benign(0.143) TCGA-56-8305-01 7 37780182 37780182 A G GPR141 Missense_Mutation p.S63G 0.28 tolerated(0.22) benign(0.023) TCGA-56-8305-01 7 44099195 44099195 G A DBNL Missense_Mutation p.E338K 0.06 tolerated(0.09) benign(0.139) TCGA-56-8305-01 7 5338901 5338901 G A SLC29A4 Missense_Mutation p.R351Q 0.41 tolerated(0.11) possibly_damaging(0.769) TCGA-56-8305-01 7 54617778 54617778 C A VSTM2A Missense_Mutation p.S183R 0.47 tolerated(0.13) benign(0.002) TCGA-56-8305-01 7 57188442 57188442 T C ZNF479 Missense_Mutation p.N227S 0.28 tolerated(0.56) benign(0.012) TCGA-56-8305-01 7 57510010 57510010 G T ZNF716 Nonsense_Mutation p.G6* 0.33 TCGA-56-8305-01 7 6175492 6175492 A G USP42 Missense_Mutation p.M155V 0.35 tolerated(0.07) probably_damaging(0.984) TCGA-56-8305-01 7 64291905 64291905 C T ZNF138 Silent p.S69S 0.47 TCGA-56-8305-01 7 65338368 65338368 C T VKORC1L1 Missense_Mutation p.P4S 0.48 deleterious_low_confidence(0.02) benign(0.027) TCGA-56-8305-01 7 6861916 6861916 T A CCZ1B Missense_Mutation p.H173L 0.18 tolerated(0.65) benign(0) TCGA-56-8305-01 7 86468904 86468904 T A GRM3 Missense_Mutation p.C692S 0.40 tolerated(0.31) probably_damaging(1) TCGA-56-8305-01 7 86469116 86469116 A C GRM3 Silent p.P762P 0.45 TCGA-56-8305-01 7 94056948 94056948 G A COL1A2 Missense_Mutation p.G1093S 0.28 unknown(0) TCGA-56-8305-01 7 94229981 94229981 G A SGCE Silent p.I338I 0.31 TCGA-56-8305-01 7 94898519 94898519 C - PPP1R9A Frame_Shift_Del p.P942Hfs*20 0.23 TCGA-56-8305-01 8 10532307 10532307 A T C8orf74 Missense_Mutation p.Q67L 0.21 tolerated(0.22) benign(0.067) TCGA-56-8305-01 8 113318271 113318271 G T CSMD3 Missense_Mutation p.T2679K 0.31 tolerated(0.35) probably_damaging(0.909) TCGA-56-8305-01 8 11606537 11606537 C A GATA4 Silent p.G242G 0.13 TCGA-56-8305-01 8 11853734 11853734 G T DEFB134 Silent p.V9V 0.12 TCGA-56-8305-01 8 126085551 126085551 T C KIAA0196 Missense_Mutation p.T332A 0.21 tolerated(0.73) benign(0.001) TCGA-56-8305-01 8 133142024 133142024 C A KCNQ3 Missense_Mutation p.V702L 0.26 tolerated(0.28) possibly_damaging(0.625) TCGA-56-8305-01 8 139609155 139609155 T A COL22A1 Missense_Mutation p.Q1475L 0.29 unknown(0) TCGA-56-8305-01 8 144993689 144993689 T A PLEC Missense_Mutation p.T3571S 0.27 probably_damaging(0.984) TCGA-56-8305-01 8 146202634 146202634 C A ZNF252P RNA 0.31 TCGA-56-8305-01 8 19363190 19363190 C T CSGALNACT1 Silent p.T52T 0.16 TCGA-56-8305-01 8 28998034 28998034 T C KIF13B Missense_Mutation p.Y812C 0.06 tolerated(0.14) probably_damaging(0.944) TCGA-56-8305-01 8 39644549 39644549 C G ADAM2 Missense_Mutation p.G279R 0.30 deleterious(0) probably_damaging(0.996) TCGA-56-8305-01 8 42587319 42587319 C A CHRNB3 Missense_Mutation p.S290Y 0.40 deleterious(0) probably_damaging(1) TCGA-56-8305-01 8 48353036 48353036 C T SPIDR Silent p.L343L 0.27 TCGA-56-8305-01 8 48353067 48353067 G A SPIDR Missense_Mutation p.G354S 0.28 tolerated(0.26) benign(0.067) TCGA-56-8305-01 8 53077724 53077724 A G ST18 Silent p.H422H 0.31 TCGA-56-8305-01 8 57214113 57214113 C A SDR16C5 Nonsense_Mutation p.G286* 0.54 TCGA-56-8305-01 8 95272599 95272599 G T GEM Missense_Mutation p.R45S 0.31 tolerated(0.34) benign(0.001) TCGA-56-8305-01 9 101748054 101748054 G T COL15A1 Missense_Mutation p.R103L 0.49 deleterious(0) benign(0.028) TCGA-56-8305-01 9 108151406 108151406 G A SLC44A1 3'UTR 0.57 TCGA-56-8305-01 9 114411892 114411892 G C DNAJC25 Missense_Mutation p.E217Q 0.54 tolerated(0.15) benign(0.134) TCGA-56-8305-01 9 121976176 121976176 G T BRINP1 Intron 0.50 TCGA-56-8305-01 9 130493120 130493120 G A TTC16 Silent p.E686E 0.37 TCGA-56-8305-01 9 131671482 131671482 A T LRRC8A Missense_Mutation p.Q680L 0.60 tolerated(0.14) probably_damaging(0.982) TCGA-56-8305-01 9 15486917 15486917 G A PSIP1 Nonsense_Mutation p.Q101* 0.40 TCGA-56-8305-01 9 2060857 2060857 G A SMARCA2 Silent p.K521K 0.34 TCGA-56-8305-01 9 35547259 35547259 C A RUSC2 Missense_Mutation p.D247E 0.58 tolerated(1) benign(0) TCGA-56-8305-01 9 87317326 87317326 G T NTRK2 Silent p.L117L 0.46 TCGA-56-8305-01 9 98209526 98209526 G A PTCH1 Missense_Mutation p.R1338C 0.14 tolerated_low_confidence(0.23) benign(0.002) TCGA-56-8305-01 X 123657318 123657318 C T TENM1 Missense_Mutation p.D977N 0.05 deleterious(0.01) benign(0.101) TCGA-56-8305-01 X 125298712 125298712 C T DCAF12L2 Missense_Mutation p.G399E 0.50 tolerated(0.08) possibly_damaging(0.703) TCGA-56-8305-01 X 141291270 141291270 C G MAGEC2 Silent p.L168L 0.55 TCGA-56-8305-01 X 148072948 148072948 G T AFF2 3'UTR 0.56 TCGA-56-8305-01 X 2645376 2645376 G T CD99 Intron 0.28 TCGA-56-8305-01 X 29973251 29973251 C G IL1RAPL1 Missense_Mutation p.Q469E 0.49 deleterious(0.01) benign(0.199) TCGA-56-8305-01 X 3240752 3240752 T C MXRA5 Missense_Mutation p.K992E 0.59 tolerated(0.68) benign(0.001) TCGA-56-8305-01 X 34148777 34148777 A G FAM47A Missense_Mutation p.V540A 0.27 tolerated(0.06) benign(0.294) TCGA-56-8305-01 X 34148778 34148778 C T FAM47A Missense_Mutation p.V540M 0.28 tolerated(0.13) possibly_damaging(0.781) TCGA-56-8305-01 X 34148779 34148779 T C FAM47A Silent p.R539R 0.32 TCGA-56-8305-01 X 37028844 37028844 C T FAM47C Silent p.H787H 0.63 TCGA-56-8305-01 X 37029324 37029324 G A FAM47C Silent p.L947L 0.49 TCGA-56-8305-01 X 40506688 40506688 G A CXorf38 Missense_Mutation p.R29C 0.59 deleterious(0) probably_damaging(0.991) TCGA-56-8305-01 X 48054217 48054217 T C SSX5 Missense_Mutation p.Y89C 0.03 tolerated(0.13) possibly_damaging(0.693) TCGA-56-8305-01 X 50658821 50658821 T A BMP15 Silent p.V131V 0.55 TCGA-56-8305-01 X 591837 591837 C A SHOX Missense_Mutation p.H69N 0.31 deleterious(0.04) benign(0.101) TCGA-56-8305-01 X 73524457 73524457 G T ZCCHC13 Missense_Mutation p.G119V 0.77 deleterious(0) probably_damaging(0.982) TCGA-56-8305-01 X 83128067 83128067 G T CYLC1 Missense_Mutation p.K117N 0.75 tolerated(0.17) benign(0.008) TCGA-56-8305-01 X 86890562 86890562 G - KLHL4 Splice_Site p.X571_splice 0.37 TCGA-56-8307-01 10 101090509 101090509 G C CNNM1 Missense_Mutation p.E455D 0.11 tolerated(0.14) benign(0.147) TCGA-56-8307-01 10 102240874 102240874 C A WNT8B Missense_Mutation p.Q121K 0.17 tolerated(1) benign(0.01) TCGA-56-8307-01 10 103899067 103899067 G C PPRC1 Missense_Mutation p.V268L 0.13 tolerated(0.15) benign(0.008) TCGA-56-8307-01 10 108412226 108412226 G T SORCS1 Missense_Mutation p.P797T 0.36 deleterious(0) possibly_damaging(0.89) TCGA-56-8307-01 10 111878344 111878344 G A ADD3 Splice_Site p.X190_splice 0.20 TCGA-56-8307-01 10 111878345 111878345 G C ADD3 Missense_Mutation p.V190L 0.22 tolerated(0.05) benign(0.181) TCGA-56-8307-01 10 113920367 113920367 A C GPAM Missense_Mutation p.I585S 0.15 deleterious(0) benign(0.312) TCGA-56-8307-01 10 124896922 124896922 G T HMX3 Missense_Mutation p.R250L 0.26 deleterious(0) probably_damaging(0.999) TCGA-56-8307-01 10 135103347 135103347 C A TUBGCP2 Silent p.A475A 0.18 TCGA-56-8307-01 10 28284102 28284102 C A ARMC4 5'UTR 0.31 TCGA-56-8307-01 10 28971018 28971018 G A BAMBI Silent p.V157V 0.16 TCGA-56-8307-01 10 33197323 33197323 C G ITGB1 Missense_Mutation p.K768N 0.34 deleterious(0) probably_damaging(0.996) TCGA-56-8307-01 10 43610079 43610079 G T RET Silent p.R677R 0.26 TCGA-56-8307-01 10 45430151 45430151 C T TMEM72 Missense_Mutation p.R133W 0.20 deleterious(0) possibly_damaging(0.906) TCGA-56-8307-01 10 49365380 49365380 C - FRMPD2 Frame_Shift_Del p.T1306Qfs*27 0.20 TCGA-56-8307-01 10 59955726 59955726 T C IPMK 3'UTR 0.14 TCGA-56-8307-01 10 8115750 8115750 C A GATA3 Silent p.R367R 0.33 TCGA-56-8307-01 10 85944496 85944496 G T C10orf99 Missense_Mutation p.V74L 0.21 tolerated(0.11) benign(0.192) TCGA-56-8307-01 10 96006094 96006094 C A PLCE1 Missense_Mutation p.L938I 0.12 deleterious(0.02) benign(0.209) TCGA-56-8307-01 10 96044624 96044624 G A PLCE1 Missense_Mutation p.G1646E 0.16 tolerated(0.07) probably_damaging(0.994) TCGA-56-8307-01 10 97920515 97920515 G T ZNF518A RNA 0.50 TCGA-56-8307-01 11 1104217 1104217 C A MUC2 Missense_Mutation p.T2803N 0.42 unknown(0) TCGA-56-8307-01 11 117784503 117784503 C A TMPRSS13 Silent p.L266L 0.31 TCGA-56-8307-01 11 123624670 123624670 G T OR6X1 Missense_Mutation p.A186D 0.31 deleterious(0) probably_damaging(0.983) TCGA-56-8307-01 11 123847579 123847579 G T OR10S1 Missense_Mutation p.L274M 0.31 tolerated(0.05) possibly_damaging(0.566) TCGA-56-8307-01 11 124134895 124134895 T A OR8G5 Missense_Mutation p.L58Q 0.44 deleterious(0) probably_damaging(0.992) TCGA-56-8307-01 11 133790778 133790778 G A IGSF9B Nonsense_Mutation p.Q948* 0.42 TCGA-56-8307-01 11 134257561 134257561 G C B3GAT1 5'UTR 0.28 TCGA-56-8307-01 11 18737182 18737182 G A IGSF22 Missense_Mutation p.T443I 0.36 deleterious(0.01) benign(0.384) TCGA-56-8307-01 11 22301125 22301125 G T ANO5 Missense_Mutation p.W852C 0.24 deleterious(0) probably_damaging(1) TCGA-56-8307-01 11 294632 294632 C T ATHL1 Silent p.S699S 0.46 TCGA-56-8307-01 11 32410601 32410601 C A WT1 3'UTR 0.24 TCGA-56-8307-01 11 32954046 32954046 A G QSER1 Silent p.T285T 0.31 TCGA-56-8307-01 11 34118041 34118041 A G CAPRIN1 Missense_Mutation p.H574R 0.30 deleterious(0.01) possibly_damaging(0.783) TCGA-56-8307-01 11 34144097 34144097 C T NAT10 Missense_Mutation p.S291F 0.33 deleterious(0) probably_damaging(1) TCGA-56-8307-01 11 4510531 4510531 A G OR52K1 Missense_Mutation p.Y134C 0.19 deleterious(0) probably_damaging(0.993) TCGA-56-8307-01 11 4824842 4824842 G T OR52R1 Missense_Mutation p.P257T 0.25 deleterious(0.02) probably_damaging(0.973) TCGA-56-8307-01 11 4945162 4945162 G T OR51G1 Silent p.T136T 0.21 TCGA-56-8307-01 11 55340360 55340360 A G OR4C16 Missense_Mutation p.I253V 0.38 deleterious(0.03) benign(0.26) TCGA-56-8307-01 11 55999684 55999684 G A OR5T2 Silent p.P326P 0.31 TCGA-56-8307-01 11 56467883 56467883 C A OR9G1 Missense_Mutation p.T7K 0.10 deleterious(0.04) possibly_damaging(0.707) TCGA-56-8307-01 11 5662407 5662407 G T TRIM34 Missense_Mutation p.G254V 0.12 tolerated(0.1) benign(0.103) TCGA-56-8307-01 11 6023970 6023970 G T OR56A4 Missense_Mutation p.L137M 0.30 deleterious(0.01) probably_damaging(1) TCGA-56-8307-01 11 6023971 6023971 G T OR56A4 Silent p.V136V 0.31 TCGA-56-8307-01 11 62289360 62289360 C A AHNAK Missense_Mutation p.V4177L 0.25 benign(0.172) TCGA-56-8307-01 11 63233717 63233717 G A HRASLS5 Silent p.Y204Y 0.11 TCGA-56-8307-01 11 64361219 64361219 G C SLC22A12 Missense_Mutation p.W258C 0.09 deleterious(0.01) benign(0.199) TCGA-56-8307-01 11 64956139 64956139 A T CAPN1 Missense_Mutation p.I363F 0.21 tolerated(0.47) benign(0.001) TCGA-56-8307-01 11 65820149 65820149 C T SF3B2 Missense_Mutation p.R47C 0.20 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-56-8307-01 11 76823687 76823687 A T CAPN5 Missense_Mutation p.Y117F 0.35 deleterious(0) possibly_damaging(0.816) TCGA-56-8307-01 11 83810079 83810079 G C DLG2 Silent p.G212G 0.29 TCGA-56-8307-01 11 88780793 88780793 G T GRM5 Missense_Mutation p.P83H 0.45 deleterious(0) possibly_damaging(0.794) TCGA-56-8307-01 11 89774305 89774305 C G TRIM49C Missense_Mutation p.Q316E 0.12 tolerated(0.39) benign(0.027) TCGA-56-8307-01 11 95825538 95825538 G A MAML2 Nonsense_Mutation p.Q553* 0.17 TCGA-56-8307-01 11 95825644 95825644 G - MAML2 Frame_Shift_Del p.G518Afs*9 0.20 TCGA-56-8307-01 12 101480562 101480562 C T ANO4 Missense_Mutation p.A519V 0.34 deleterious(0) possibly_damaging(0.708) TCGA-56-8307-01 12 105519844 105519844 T - KIAA1033 Frame_Shift_Del p.F284Lfs*16 0.29 TCGA-56-8307-01 12 10600195 10600195 C T KLRC1 Missense_Mutation p.G176S 0.27 tolerated(0.05) probably_damaging(0.986) TCGA-56-8307-01 12 106734767 106734767 T C TCP11L2 Missense_Mutation p.S436P 0.38 tolerated(0.12) possibly_damaging(0.653) TCGA-56-8307-01 12 109577789 109577789 G T ACACB Silent p.R193R 0.23 TCGA-56-8307-01 12 110488999 110488999 T A C12orf76 Intron 0.26 TCGA-56-8307-01 12 110489000 110489000 G T C12orf76 Intron 0.24 TCGA-56-8307-01 12 111885144 111885144 T A SH2B3 Silent p.P344P 0.24 TCGA-56-8307-01 12 113307817 113307817 G T RPH3A Missense_Mutation p.A257S 0.26 tolerated(0.98) benign(0.002) TCGA-56-8307-01 12 113532897 113532897 G A DTX1 Silent p.T479T 0.47 TCGA-56-8307-01 12 121441937 121441937 C G C12orf43 3'UTR 0.33 TCGA-56-8307-01 12 128899621 128899621 C A TMEM132C Silent p.R144R 0.60 TCGA-56-8307-01 12 129559137 129559137 G A TMEM132D Silent p.I861I 0.29 TCGA-56-8307-01 12 129563130 129563130 C A TMEM132D Missense_Mutation p.R688S 0.23 deleterious(0) benign(0.098) TCGA-56-8307-01 12 130184791 130184791 C G TMEM132D Missense_Mutation p.E178Q 0.31 tolerated(0.05) possibly_damaging(0.523) TCGA-56-8307-01 12 133393328 133393328 C G GOLGA3 Missense_Mutation p.Q68H 0.10 deleterious_low_confidence(0.03) possibly_damaging(0.849) TCGA-56-8307-01 12 14018867 14018867 C A GRIN2B Silent p.R92R 0.39 TCGA-56-8307-01 12 2939966 2939967 CC - NRIP2 Frame_Shift_Del p.E135Afs*37 0.26 TCGA-56-8307-01 12 39998733 39998733 C A ABCD2 Splice_Site p.X413_splice 0.24 TCGA-56-8307-01 12 40677838 40677838 T A LRRK2 Missense_Mutation p.N801K 0.34 tolerated(0.11) benign(0.22) TCGA-56-8307-01 12 48369171 48369171 G T COL2A1 Missense_Mutation p.P1272H 0.26 unknown(0) TCGA-56-8307-01 12 49233867 49233867 C T DDX23 Missense_Mutation p.D115N 0.31 deleterious_low_confidence(0.01) unknown(0) TCGA-56-8307-01 12 51685833 51685833 C T BIN2 Missense_Mutation p.E353K 0.30 deleterious_low_confidence(0) benign(0.345) TCGA-56-8307-01 12 54333216 54333216 C T HOXC13 Missense_Mutation p.P176S 0.18 tolerated(0.21) probably_damaging(0.998) TCGA-56-8307-01 12 54350345 54350345 T A HOXC12 Missense_Mutation p.F282I 0.40 deleterious(0) probably_damaging(0.991) TCGA-56-8307-01 12 54379300 54379300 A G HOXC10 Missense_Mutation p.Y86C 0.26 tolerated(0.93) benign(0.001) TCGA-56-8307-01 12 57881767 57881767 G T MARS 5'UTR 0.34 TCGA-56-8307-01 12 64812765 64812765 A G XPOT Missense_Mutation p.D127G 0.33 deleterious(0) probably_damaging(0.998) TCGA-56-8307-01 12 66712448 66712448 T A HELB Missense_Mutation p.D677E 0.28 deleterious(0) probably_damaging(1) TCGA-56-8307-01 12 66712449 66712449 G T HELB Missense_Mutation p.A678S 0.28 tolerated(0.14) possibly_damaging(0.612) TCGA-56-8307-01 12 72680597 72680597 G T TRHDE Missense_Mutation p.V306L 0.26 tolerated(0.2) possibly_damaging(0.462) TCGA-56-8307-01 12 72680598 72680598 T A TRHDE Missense_Mutation p.V306E 0.27 tolerated(0.44) possibly_damaging(0.677) TCGA-56-8307-01 12 8328493 8328493 C G ZNF705A Silent p.S91S 0.35 TCGA-56-8307-01 12 91449356 91449356 C A KERA Missense_Mutation p.V235L 0.28 tolerated(0.24) benign(0.041) TCGA-56-8307-01 12 95228313 95228313 A G MIR492 3'Flank 0.25 TCGA-56-8307-01 13 101881936 101881936 C A NALCN Splice_Site p.X479_splice 0.58 TCGA-56-8307-01 13 36220460 36220460 C A NBEA Missense_Mutation p.P2561Q 0.32 deleterious(0) probably_damaging(1) TCGA-56-8307-01 13 36686212 36686212 G A DCLK1 Missense_Mutation p.P173S 0.55 tolerated(0.44) unknown(0) TCGA-56-8307-01 13 52676107 52676107 C A NEK5 Missense_Mutation p.G285V 0.55 deleterious(0.02) benign(0.035) TCGA-56-8307-01 13 99362009 99362009 G T SLC15A1 Missense_Mutation p.P322H 0.46 deleterious(0) probably_damaging(0.998) TCGA-56-8307-01 14 107035130 107035130 C A IGHV5-51 Silent p.L11L 0.33 TCGA-56-8307-01 14 20249016 20249016 T A OR4M1 Missense_Mutation p.C179S 0.21 deleterious(0) probably_damaging(1) TCGA-56-8307-01 14 20389464 20389464 G T OR4K5 Missense_Mutation p.M233I 0.17 tolerated(0.49) benign(0.426) TCGA-56-8307-01 14 23887513 23887513 G T MYH7 Missense_Mutation p.R1359S 0.35 deleterious(0) probably_damaging(0.995) TCGA-56-8307-01 14 29236984 29236984 G C FOXG1 Missense_Mutation p.E167Q 0.32 tolerated(0.12) unknown(0) TCGA-56-8307-01 14 29237785 29237785 A C FOXG1 Missense_Mutation p.M434L 0.49 tolerated_low_confidence(0.25) benign(0.005) TCGA-56-8307-01 14 62212464 62212464 A G HIF1A Missense_Mutation p.K777R 0.43 tolerated(0.05) benign(0.424) TCGA-56-8307-01 14 91341596 91341596 C A RPS6KA5 Nonsense_Mutation p.E649* 0.48 TCGA-56-8307-01 15 25959008 25959008 G A ATP10A Silent p.H719H 0.44 TCGA-56-8307-01 15 43769952 43769952 T C TP53BP1 Missense_Mutation p.E265G 0.44 tolerated(0.08) possibly_damaging(0.856) TCGA-56-8307-01 15 45003781 45003782 CT - B2M Frame_Shift_Del p.L15Ffs*41 0.32 TCGA-56-8307-01 15 54919025 54919025 G A UNC13C Splice_Site p.X2120_splice 0.35 TCGA-56-8307-01 15 58302886 58302886 C T ALDH1A2 Missense_Mutation p.G152S 0.52 deleterious(0.01) probably_damaging(1) TCGA-56-8307-01 15 73614999 73614999 G T HCN4 Silent p.I1145I 0.29 TCGA-56-8307-01 15 74166005 74166005 T C TBC1D21 5'UTR 0.35 TCGA-56-8307-01 15 74836313 74836313 G A ARID3B Silent p.Q12Q 0.28 TCGA-56-8307-01 15 87572095 87572095 G T AGBL1 3'UTR 0.26 TCGA-56-8307-01 15 98995090 98995090 C T FAM169B Missense_Mutation p.V112I 0.29 tolerated(1) benign(0.027) TCGA-56-8307-01 16 12061635 12061635 T A TNFRSF17 Missense_Mutation p.N162K 0.39 tolerated(0.19) benign(0.367) TCGA-56-8307-01 16 18839468 18839468 A G SMG1 Missense_Mutation p.I3209T 0.21 tolerated(0.19) benign(0.01) TCGA-56-8307-01 16 19745019 19745019 G T IQCK Splice_Site p.X83_splice 0.32 TCGA-56-8307-01 16 20348051 20348051 T A UMOD Splice_Site p.X581_splice 0.34 TCGA-56-8307-01 16 20693597 20693597 C A ACSM1 Missense_Mutation p.D198Y 0.33 deleterious(0) probably_damaging(0.91) TCGA-56-8307-01 16 23203770 23203770 C T SCNN1G Missense_Mutation p.A239V 0.37 deleterious(0) probably_damaging(1) TCGA-56-8307-01 16 23690602 23690602 C T PLK1 Missense_Mutation p.H117Y 0.26 tolerated(0.29) benign(0.017) TCGA-56-8307-01 16 24551941 24551941 T A RBBP6 5'UTR 0.34 TCGA-56-8307-01 16 25255122 25255122 T A ZKSCAN2 Silent p.L655L 0.24 TCGA-56-8307-01 16 30036751 30036751 C A FAM57B Missense_Mutation p.G193V 0.39 deleterious(0) probably_damaging(1) TCGA-56-8307-01 16 4833465 4833465 G C SEPT12 Missense_Mutation p.R242G 0.16 deleterious(0) probably_damaging(0.996) TCGA-56-8307-01 16 57003553 57003553 G A CETP Silent p.E133E 0.53 TCGA-56-8307-01 16 57608964 57608964 G C GPR114 Silent p.L482L 0.50 TCGA-56-8307-01 16 70905984 70905984 G T HYDIN Silent p.R3683R 0.21 TCGA-56-8307-01 16 72827520 72827520 C G ZFHX3 Missense_Mutation p.G3021R 0.12 unknown(0) TCGA-56-8307-01 16 77359898 77359898 G T ADAMTS18 Missense_Mutation p.R633S 0.38 deleterious(0) probably_damaging(0.991) TCGA-56-8307-01 16 778914 778914 C A HAGHL Intron 0.50 TCGA-56-8307-01 16 90160450 90160450 C A TUBB8P7 Intron 0.22 TCGA-56-8307-01 17 10296509 10296509 T C MYH8 Missense_Mutation p.T1729A 0.48 tolerated(0.27) benign(0.423) TCGA-56-8307-01 17 15207423 15207423 G T TEKT3 Missense_Mutation p.Q435K 0.08 tolerated(0.88) benign(0.119) TCGA-56-8307-01 17 18907349 18907349 G A FAM83G Silent p.A2A 0.17 TCGA-56-8307-01 17 26882011 26882011 C G PIGS Missense_Mutation p.G417A 0.30 tolerated(0.15) possibly_damaging(0.477) TCGA-56-8307-01 17 27308605 27308605 C T SEZ6 Missense_Mutation p.E170K 0.32 tolerated(0.78) benign(0.066) TCGA-56-8307-01 17 36093691 36093691 C A HNF1B Missense_Mutation p.C223F 0.33 tolerated(0.41) benign(0.058) TCGA-56-8307-01 17 38907438 38907438 C T KRT25 Silent p.A270A 0.30 TCGA-56-8307-01 17 39535894 39535894 G T KRT34 Missense_Mutation p.N268K 0.20 deleterious(0.05) possibly_damaging(0.849) TCGA-56-8307-01 17 39680521 39680521 C G KRT19 Splice_Site p.X275_splice 0.14 TCGA-56-8307-01 17 40720496 40720496 G T MLX Missense_Mutation p.V84L 0.15 tolerated(0.15) benign(0.003) TCGA-56-8307-01 17 53853539 53853539 C A PCTP 3'UTR 0.50 TCGA-56-8307-01 17 54526459 54526459 C A ANKFN1 Missense_Mutation p.D376E 0.23 deleterious(0.01) benign(0.043) TCGA-56-8307-01 17 58556530 58556530 C T APPBP2 Missense_Mutation p.R161H 0.19 tolerated(0.1) benign(0.003) TCGA-56-8307-01 17 59469463 59469463 C G BCAS3 Missense_Mutation p.L922V 0.34 tolerated_low_confidence(0.41) possibly_damaging(0.596) TCGA-56-8307-01 17 7577046 7577046 C A TP53 Nonsense_Mutation p.E298* 0.53 TCGA-56-8307-01 17 79246386 79246386 A C SLC38A10 Silent p.P318P 0.25 TCGA-56-8307-01 17 81042969 81042969 G T METRNL Missense_Mutation p.R109M 0.25 deleterious(0) benign(0.064) TCGA-56-8307-01 18 23807098 23807098 G T TAF4B Silent p.G67G 0.14 TCGA-56-8307-01 18 25565006 25565006 C A CDH2 Missense_Mutation p.G723C 0.52 deleterious(0.01) probably_damaging(0.994) TCGA-56-8307-01 18 30913140 30913140 C A CCDC178 Nonsense_Mutation p.E293* 0.15 TCGA-56-8307-01 18 30913141 30913141 C G CCDC178 Missense_Mutation p.M292I 0.14 tolerated(0.35) benign(0) TCGA-56-8307-01 18 30926328 30926328 C A CCDC178 Nonsense_Mutation p.E169* 0.40 TCGA-56-8307-01 18 31326030 31326030 C T ASXL3 Missense_Mutation p.T2073M 0.12 possibly_damaging(0.751) TCGA-56-8307-01 18 33800152 33800152 G T MOCOS Silent p.R644R 0.33 TCGA-56-8307-01 18 42531133 42531133 G A SETBP1 Missense_Mutation p.V610I 0.40 tolerated(0.17) probably_damaging(0.992) TCGA-56-8307-01 18 43502437 43502437 C A EPG5 Missense_Mutation p.A990S 0.29 tolerated(0.15) benign(0.025) TCGA-56-8307-01 18 44775321 44775321 G A SKOR2 Silent p.N78N 0.31 TCGA-56-8307-01 18 56202620 56202620 G T ALPK2 Missense_Mutation p.P1600H 0.19 deleterious(0.01) possibly_damaging(0.885) TCGA-56-8307-01 18 59947605 59947605 G A KIAA1468 Missense_Mutation p.G994S 0.19 tolerated(0.12) probably_damaging(0.953) TCGA-56-8307-01 18 61390622 61390622 G T SERPINB11 Missense_Mutation p.A390S 0.23 tolerated(1) benign(0.031) TCGA-56-8307-01 18 67231798 67231798 G C DOK6 Missense_Mutation p.E48Q 0.44 deleterious(0) probably_damaging(0.932) TCGA-56-8307-01 18 67688050 67688050 C A RTTN Missense_Mutation p.C1985F 0.40 deleterious(0) probably_damaging(0.999) TCGA-56-8307-01 18 70205517 70205517 A G CBLN2 Missense_Mutation p.L190P 0.19 deleterious(0) probably_damaging(0.987) TCGA-56-8307-01 18 73000064 73000064 A T TSHZ1 Missense_Mutation p.Q856L 0.31 deleterious(0) probably_damaging(0.998) TCGA-56-8307-01 19 12430577 12430577 G T ZNF563 Silent p.R88R 0.27 TCGA-56-8307-01 19 12691568 12691568 T A ZNF490 Missense_Mutation p.T441S 0.35 tolerated(0.06) benign(0.41) TCGA-56-8307-01 19 13260668 13260668 G A STX10 Missense_Mutation p.R27C 0.39 deleterious(0) probably_damaging(0.999) TCGA-56-8307-01 19 15067308 15067308 G A SLC1A6 Silent p.T383T 0.29 TCGA-56-8307-01 19 15564266 15564266 G T RASAL3 Missense_Mutation p.D774E 0.33 tolerated(0.25) possibly_damaging(0.708) TCGA-56-8307-01 19 16593537 16593537 G T CALR3 Missense_Mutation p.D246E 0.25 tolerated(1) benign(0) TCGA-56-8307-01 19 17988635 17988635 C T SLC5A5 Missense_Mutation p.R268C 0.30 deleterious(0) probably_damaging(0.999) TCGA-56-8307-01 19 18193057 18193057 T A IL12RB1 Missense_Mutation p.R48W 0.26 deleterious(0.04) benign(0.2) TCGA-56-8307-01 19 2102234 2102234 T G AP3D1 Missense_Mutation p.S1196R 0.15 deleterious(0.03) benign(0.001) TCGA-56-8307-01 19 2116661 2116661 C A AP3D1 Missense_Mutation p.E648D 0.18 tolerated(0.42) benign(0.006) TCGA-56-8307-01 19 22784214 22784214 C A AC011467.1 5'Flank 0.16 TCGA-56-8307-01 19 2732789 2732789 C T SLC39A3 Missense_Mutation p.G302D 0.07 deleterious(0) probably_damaging(1) TCGA-56-8307-01 19 33353092 33353092 C G SLC7A9 Missense_Mutation p.E212D 0.04 tolerated(0.42) benign(0.012) TCGA-56-8307-01 19 35422831 35422831 G T ZNF30 Missense_Mutation p.D32Y 0.24 deleterious(0) possibly_damaging(0.612) TCGA-56-8307-01 19 40761112 40761112 C A AKT2 Missense_Mutation p.W80C 0.30 deleterious(0) probably_damaging(0.983) TCGA-56-8307-01 19 41442094 41442094 G T CYP2B7P RNA 0.08 TCGA-56-8307-01 19 41442103 41442103 C G CYP2B7P RNA 0.11 TCGA-56-8307-01 19 42213632 42213632 C G CEA Missense_Mutation p.T33S 0.29 tolerated(0.08) benign(0.326) TCGA-56-8307-01 19 44099264 44099264 T A IRGQ Missense_Mutation p.N76I 0.27 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-56-8307-01 19 4475319 4475319 C T HDGFRP2 Silent p.Y40Y 0.30 TCGA-56-8307-01 19 44934067 44934067 C A ZNF229 Nonsense_Mutation p.E297* 0.20 TCGA-56-8307-01 19 49967888 49967888 G T ALDH16A1 Splice_Site p.X480_splice 0.33 TCGA-56-8307-01 19 49967889 49967889 G T ALDH16A1 Missense_Mutation p.G480W 0.32 deleterious(0) probably_damaging(0.998) TCGA-56-8307-01 19 51330199 51330199 A G KLK15 Missense_Mutation p.V139A 0.36 tolerated(0.13) benign(0.21) TCGA-56-8307-01 19 51983903 51983903 C A CEACAM18 Silent p.T184T 0.33 TCGA-56-8307-01 19 52937293 52937293 G T ZNF534 Missense_Mutation p.R34M 0.11 deleterious(0) possibly_damaging(0.745) TCGA-56-8307-01 19 54758650 54758650 G A LILRB5 Silent p.S401S 0.25 TCGA-56-8307-01 19 58601608 58601608 G C ZSCAN18 Silent p.A65A 0.05 TCGA-56-8307-01 19 8434181 8434181 C T ANGPTL4 Missense_Mutation p.S209F 0.31 deleterious(0) probably_damaging(1) TCGA-56-8307-01 19 9056370 9056370 T C MUC16 Missense_Mutation p.Y10359C 0.29 benign(0.027) TCGA-56-8307-01 19 9059172 9059172 A T MUC16 Missense_Mutation p.L9425Q 0.30 unknown(0) TCGA-56-8307-01 1 103471408 103471408 C A COL11A1 Missense_Mutation p.D611Y 0.26 unknown(0) TCGA-56-8307-01 1 104112444 104112444 T C AMY2B Intron 0.15 TCGA-56-8307-01 1 104160093 104160093 G T AMY2A Missense_Mutation p.G11W 0.20 deleterious(0.01) probably_damaging(0.952) TCGA-56-8307-01 1 109466746 109466746 A G GPSM2 Silent p.T575T 0.41 TCGA-56-8307-01 1 109810658 109810658 C T CELSR2 Silent p.A2098A 0.35 TCGA-56-8307-01 1 11008696 11008696 G A C1orf127 Missense_Mutation p.P499L 0.32 tolerated(0.49) benign(0.199) TCGA-56-8307-01 1 12066687 12066687 G T MFN2 Missense_Mutation p.M603I 0.36 tolerated(0.35) probably_damaging(0.977) TCGA-56-8307-01 1 145273239 145273239 G T NOTCH2NL Missense_Mutation p.K31N 0.06 tolerated(0.28) benign(0.441) TCGA-56-8307-01 1 146757972 146757972 A T CHD1L Intron 0.17 TCGA-56-8307-01 1 150997192 150997192 C G PRUNE Silent p.S147S 0.30 TCGA-56-8307-01 1 152280873 152280873 G T FLG Missense_Mutation p.H2163Q 0.26 benign(0.227) TCGA-56-8307-01 1 152777499 152777499 T A LCE1C 3'UTR 0.38 TCGA-56-8307-01 1 153661526 153661526 C T NPR1 Silent p.L839L 0.32 TCGA-56-8307-01 1 153785779 153785779 C T GATAD2B Missense_Mutation p.E456K 0.10 deleterious(0) probably_damaging(0.999) TCGA-56-8307-01 1 155294557 155294557 G A RUSC1 Intron 0.34 TCGA-56-8307-01 1 157489536 157489536 G A FCRL5 Missense_Mutation p.A886V 0.22 tolerated(0.08) benign(0.003) TCGA-56-8307-01 1 158724950 158724950 T A OR6K6 Missense_Mutation p.S115R 0.31 deleterious(0.02) benign(0.029) TCGA-56-8307-01 1 161647123 161647123 C A FCGR2B Missense_Mutation p.P275T 0.24 tolerated(0.4) benign(0.01) TCGA-56-8307-01 1 161928480 161928480 C G ATF6 3'UTR 0.11 TCGA-56-8307-01 1 161954676 161954676 G C OLFML2B Silent p.A523A 0.25 TCGA-56-8307-01 1 16475116 16475116 C A EPHA2 Missense_Mutation p.V194F 0.28 deleterious(0) probably_damaging(0.972) TCGA-56-8307-01 1 176104181 176104181 T G RFWD2 Silent p.T311T 0.07 TCGA-56-8307-01 1 176564080 176564080 G T PAPPA2 Missense_Mutation p.G447V 0.30 tolerated(0.5) benign(0.319) TCGA-56-8307-01 1 176833498 176833498 G T ASTN1 Missense_Mutation p.S1269R 0.25 tolerated_low_confidence(0.26) possibly_damaging(0.67) TCGA-56-8307-01 1 185112486 185112486 T G TRMT1L Intron 0.14 TCGA-56-8307-01 1 19018390 19018390 C A PAX7 Missense_Mutation p.D243E 0.22 deleterious(0.01) benign(0.162) TCGA-56-8307-01 1 193149771 193149771 A G B3GALT2 Missense_Mutation p.Y308H 0.28 deleterious(0.02) probably_damaging(1) TCGA-56-8307-01 1 196857238 196857238 C G CFHR4 5'UTR 0.47 TCGA-56-8307-01 1 196952167 196952167 A G CFHR5 Missense_Mutation p.T71A 0.28 deleterious(0.01) benign(0.318) TCGA-56-8307-01 1 202288200 202288200 C T LGR6 Silent p.N923N 0.20 TCGA-56-8307-01 1 204588530 204588530 G T LRRN2 Silent p.G197G 0.29 TCGA-56-8307-01 1 205764057 205764057 C T SLC41A1 Missense_Mutation p.G433R 0.16 deleterious(0) probably_damaging(1) TCGA-56-8307-01 1 207131900 207131900 C A FCAMR Silent p.G565G 0.45 TCGA-56-8307-01 1 209773329 209773329 G A CAMK1G Missense_Mutation p.G32R 0.26 deleterious(0) probably_damaging(1) TCGA-56-8307-01 1 212538544 212538544 A G TMEM206 3'UTR 0.05 TCGA-56-8307-01 1 226465483 226465483 T C LIN9 Silent p.K241K 0.33 TCGA-56-8307-01 1 227834313 227834313 C A ZNF678 5'UTR 0.32 TCGA-56-8307-01 1 235419066 235419066 C A ARID4B Splice_Site p.X62_splice 0.22 TCGA-56-8307-01 1 235904768 235904768 G C LYST Missense_Mutation p.P2771R 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-56-8307-01 1 236767253 236767253 C A HEATR1 Splice_Site p.X48_splice 0.21 TCGA-56-8307-01 1 237870395 237870395 T C RYR2 Missense_Mutation p.C3243R 0.38 possibly_damaging(0.86) TCGA-56-8307-01 1 237995868 237995868 A T RYR2 Missense_Mutation p.K4942M 0.10 benign(0.432) TCGA-56-8307-01 1 240371536 240371536 C T FMN2 Missense_Mutation p.P1142S 0.15 unknown(0) TCGA-56-8307-01 1 240371538 240371538 T C FMN2 Silent p.P1142P 0.17 TCGA-56-8307-01 1 240601508 240601508 G C FMN2 Missense_Mutation p.E1686D 0.31 possibly_damaging(0.766) TCGA-56-8307-01 1 242035403 242035403 G T EXO1 Missense_Mutation p.S446I 0.21 tolerated(0.09) benign(0.211) TCGA-56-8307-01 1 242162078 242162078 C A MAP1LC3C Silent p.P38P 0.32 TCGA-56-8307-01 1 245927373 245927373 C A SMYD3 Missense_Mutation p.M385I 0.20 tolerated(0.1) benign(0.013) TCGA-56-8307-01 1 247039465 247039465 C - AHCTF1 Frame_Shift_Del p.E997Rfs*10 0.13 TCGA-56-8307-01 1 247263935 247263935 T C ZNF669 Missense_Mutation p.N379S 0.37 tolerated(0.84) possibly_damaging(0.476) TCGA-56-8307-01 1 247614885 247614885 G A OR2B11 Silent p.L134L 0.36 TCGA-56-8307-01 1 247695521 247695521 C A OR2C3 Missense_Mutation p.C98F 0.16 deleterious(0) probably_damaging(0.994) TCGA-56-8307-01 1 247768905 247768905 G T OR2G3 Missense_Mutation p.E6D 0.34 tolerated(0.61) benign(0.001) TCGA-56-8307-01 1 248059782 248059785 GGGG AGGGT OR2W3 Frame_Shift_Ins p.A300Cfs*40 0.30 TCGA-56-8307-01 1 248112448 248112448 G A OR2L8 Missense_Mutation p.G97R 0.29 deleterious(0) possibly_damaging(0.864) TCGA-56-8307-01 1 248344139 248344139 G T OR2M2 Missense_Mutation p.M284I 0.32 tolerated(0.05) benign(0.018) TCGA-56-8307-01 1 248551758 248551758 C T OR2T6 Silent p.P283P 0.25 TCGA-56-8307-01 1 248637144 248637145 - C OR2T3 Frame_Shift_Ins p.I167Hfs*11 0.35 TCGA-56-8307-01 1 248789738 248789738 C G OR2T11 Missense_Mutation p.R231P 0.41 deleterious(0) possibly_damaging(0.703) TCGA-56-8307-01 1 27432367 27432367 G A SLC9A1 Intron 0.37 TCGA-56-8307-01 1 36181896 36181896 A C C1orf216 Silent p.A9A 0.10 TCGA-56-8307-01 1 36932242 36932242 G T CSF3R Missense_Mutation p.Q770K 0.34 tolerated(0.48) benign(0.138) TCGA-56-8307-01 1 3782284 3782284 G T DFFB Intron 0.21 TCGA-56-8307-01 1 43213895 43213895 G T LEPRE1 Missense_Mutation p.P605Q 0.30 deleterious(0) probably_damaging(0.992) TCGA-56-8307-01 1 45295606 45295606 T A PTCH2 Nonsense_Mutation p.R304* 0.17 TCGA-56-8307-01 1 45295607 45295607 G A PTCH2 Silent p.A303A 0.17 TCGA-56-8307-01 1 53925105 53925105 G A DMRTB1 5'UTR 0.23 TCGA-56-8307-01 1 55062967 55062967 G T ACOT11 Missense_Mutation p.A215S 0.28 deleterious(0.04) benign(0.059) TCGA-56-8307-01 1 60301020 60301020 A G HOOK1 Missense_Mutation p.H137R 0.14 deleterious(0) probably_damaging(0.945) TCGA-56-8307-01 1 60499211 60499211 G T C1orf87 Missense_Mutation p.D322E 0.26 tolerated(1) benign(0.001) TCGA-56-8307-01 1 66058532 66058532 T G LEPR Silent p.V229V 0.43 TCGA-56-8307-01 1 75608860 75608860 C A LHX8 Silent p.V149V 0.25 TCGA-56-8307-01 1 77516032 77516032 T G ST6GALNAC5 Missense_Mutation p.V254G 0.12 probably_damaging(0.965) TCGA-56-8307-01 1 84864238 84864238 C T DNASE2B 5'UTR 0.28 TCGA-56-8307-01 1 86934796 86934796 A G CLCA1 Missense_Mutation p.T48A 0.39 tolerated(0.21) benign(0.007) TCGA-56-8307-01 1 979021 979021 C T AGRN Silent p.S569S 0.34 TCGA-56-8307-01 1 986185 986185 G T AGRN Missense_Mutation p.G1741C 0.31 deleterious(0) probably_damaging(0.982) TCGA-56-8307-01 20 126365 126365 C A DEFB126 3'UTR 0.11 TCGA-56-8307-01 20 16729026 16729026 G T OTOR 5'UTR 0.43 TCGA-56-8307-01 20 20571916 20571916 C G RALGAPA2 Missense_Mutation p.G749A 0.30 tolerated(0.68) benign(0.004) TCGA-56-8307-01 20 2384094 2384094 C T TGM6 Silent p.P347P 0.32 TCGA-56-8307-01 20 29845486 29845486 C A DEFB115 Nonsense_Mutation p.S7* 0.29 TCGA-56-8307-01 20 29964965 29964965 G C DEFB118 3'Flank 0.47 TCGA-56-8307-01 20 30956903 30956903 C G ASXL1 Missense_Mutation p.R77G 0.30 deleterious(0) possibly_damaging(0.741) TCGA-56-8307-01 20 31622897 31622897 A T BPIFB6 Nonsense_Mutation p.K155* 0.41 TCGA-56-8307-01 20 36641945 36641945 G A TTI1 Missense_Mutation p.L92F 0.17 deleterious(0.04) possibly_damaging(0.661) TCGA-56-8307-01 20 44978923 44978923 C T SLC35C2 3'UTR 0.25 TCGA-56-8307-01 20 57599434 57599434 C G TUBB1 Missense_Mutation p.R318G 0.16 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-56-8307-01 20 58342279 58342279 G T PHACTR3 Missense_Mutation p.A194S 0.15 tolerated(0.67) benign(0.005) TCGA-56-8307-01 20 61288446 61288446 G T SLCO4A1 Missense_Mutation p.A214S 0.19 tolerated(0.83) benign(0.005) TCGA-56-8307-01 21 15748052 15748052 C A HSPA13 Silent p.V223V 0.15 TCGA-56-8307-01 21 28213325 28213325 T C ADAMTS1 Missense_Mutation p.N457S 0.25 tolerated(0.72) benign(0.068) TCGA-56-8307-01 21 43176909 43176909 C G RIPK4 Missense_Mutation p.V84L 0.41 deleterious(0.01) possibly_damaging(0.826) TCGA-56-8307-01 21 45709937 45709937 C A AIRE Missense_Mutation p.P289T 0.14 tolerated(0.1) benign(0.178) TCGA-56-8307-01 22 23248711 23248711 G T IGLC3 Silent p.A67A 0.15 TCGA-56-8307-01 22 23248712 23248712 G T IGLC3 Missense_Mutation p.A68S 0.15 benign(0.268) TCGA-56-8307-01 22 37425471 37425471 C T MPST Silent p.P290P 0.20 TCGA-56-8307-01 22 50722169 50722169 T A PLXNB2 Missense_Mutation p.E811V 0.11 tolerated(0.51) benign(0.11) TCGA-56-8307-01 2 111419360 111419360 C A BUB1 Missense_Mutation p.C339F 0.13 tolerated(0.37) benign(0.021) TCGA-56-8307-01 2 136603896 136603896 G C MCM6 Missense_Mutation p.S707C 0.38 deleterious(0.03) benign(0.195) TCGA-56-8307-01 2 152553150 152553150 C G NEB Splice_Site p.X523_splice 0.36 TCGA-56-8307-01 2 152989757 152989757 G A STAM2 Silent p.A300A 0.37 TCGA-56-8307-01 2 154996981 154996981 G T GALNT13 Missense_Mutation p.A92S 0.14 tolerated(1) benign(0.015) TCGA-56-8307-01 2 163215625 163215625 G C GCA Missense_Mutation p.D176H 0.16 deleterious(0) probably_damaging(0.999) TCGA-56-8307-01 2 168105606 168105606 C A XIRP2 Nonsense_Mutation p.Y2568* 0.19 TCGA-56-8307-01 2 179410246 179410246 T C TTN Missense_Mutation p.Y31864C 0.23 TCGA-56-8307-01 2 179485447 179485447 A G TTN Missense_Mutation p.V15297A 0.29 TCGA-56-8307-01 2 197750591 197750591 C G PGAP1 Missense_Mutation p.W396S 0.31 deleterious(0) possibly_damaging(0.816) TCGA-56-8307-01 2 201488678 201488678 A T AOX1 Missense_Mutation p.D699V 0.20 deleterious(0.02) benign(0.119) TCGA-56-8307-01 2 210654268 210654268 C G UNC80 Missense_Mutation p.S246C 0.38 possibly_damaging(0.864) TCGA-56-8307-01 2 211476891 211476891 G T CPS1 Silent p.R820R 0.35 TCGA-56-8307-01 2 219602412 219602412 G A TTLL4 Missense_Mutation p.G5R 0.30 tolerated(0.06) benign(0.194) TCGA-56-8307-01 2 220430018 220430018 C T OBSL1 Missense_Mutation p.E785K 0.17 tolerated(0.06) probably_damaging(0.948) TCGA-56-8307-01 2 228884563 228884563 T A SPHKAP Missense_Mutation p.Q336L 0.42 tolerated(0.65) benign(0.065) TCGA-56-8307-01 2 232663573 232663573 G A COPS7B Missense_Mutation p.D179N 0.12 tolerated(0.49) benign(0.366) TCGA-56-8307-01 2 239038894 239038894 G C ESPNL Missense_Mutation p.Q513H 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-56-8307-01 2 240969034 240969034 G T OR6B2 Missense_Mutation p.N271K 0.09 deleterious(0) possibly_damaging(0.893) TCGA-56-8307-01 2 241537776 241537776 A G CAPN10 Missense_Mutation p.I651V 0.16 tolerated(0.44) benign(0.011) TCGA-56-8307-01 2 29160860 29160860 G T WDR43 Silent p.T540T 0.20 TCGA-56-8307-01 2 30993189 30993189 C A CAPN13 Missense_Mutation p.A172S 0.14 deleterious(0) probably_damaging(1) TCGA-56-8307-01 2 3405664 3405664 C T TRAPPC12 Silent p.I388I 0.25 TCGA-56-8307-01 2 47202110 47202110 A T TTC7A Splice_Site p.X173_splice 0.38 TCGA-56-8307-01 2 61552553 61552553 G C USP34 Missense_Mutation p.F990L 0.08 deleterious(0) probably_damaging(0.995) TCGA-56-8307-01 2 74783761 74783761 G T DOK1 Silent p.T322T 0.33 TCGA-56-8307-01 2 89339799 89339799 T C IGKV1-12 Silent p.T91T 0.12 TCGA-56-8307-01 2 89339800 89339800 G T IGKV1-12 Missense_Mutation p.T91K 0.12 deleterious(0.02) possibly_damaging(0.497) TCGA-56-8307-01 2 89976360 89976360 T C IGKV2D-30 Silent p.S77S 0.23 TCGA-56-8307-01 2 95847382 95847382 G T ZNF2 Missense_Mutation p.R270L 0.35 deleterious(0.02) probably_damaging(0.925) TCGA-56-8307-01 3 10452315 10452315 G A ATP2B2 Silent p.G128G 0.48 TCGA-56-8307-01 3 111927150 111927150 T A SLC9C1 Missense_Mutation p.I621L 0.23 tolerated(0.1) benign(0.012) TCGA-56-8307-01 3 118865646 118865646 C A C3orf30 Silent p.R204R 0.39 TCGA-56-8307-01 3 119367195 119367195 T C POPDC2 Silent p.T307T 0.27 TCGA-56-8307-01 3 122287483 122287483 A G DTX3L Missense_Mutation p.R183G 0.10 deleterious(0) benign(0.013) TCGA-56-8307-01 3 127413885 127413885 C T MGLL Missense_Mutation p.R250H 0.15 tolerated(0.1) benign(0.001) TCGA-56-8307-01 3 129284240 129284240 A G PLXND1 Silent p.S1488S 0.18 TCGA-56-8307-01 3 138665398 138665398 G A FOXL2 Missense_Mutation p.P56L 0.33 deleterious(0) probably_damaging(0.979) TCGA-56-8307-01 3 142681153 142681153 G T PAQR9 Silent p.A342A 0.18 TCGA-56-8307-01 3 153943624 153943624 T C ARHGEF26 Intron 0.41 TCGA-56-8307-01 3 155215160 155215160 C A PLCH1 Missense_Mutation p.D603Y 0.32 deleterious(0) probably_damaging(0.998) TCGA-56-8307-01 3 164907436 164907436 G T SLITRK3 Silent p.R395R 0.32 TCGA-56-8307-01 3 183885414 183885414 C T DVL3 Silent p.I415I 0.36 TCGA-56-8307-01 3 184102908 184102908 A G CHRD Missense_Mutation p.Y567C 0.44 deleterious(0) probably_damaging(0.99) TCGA-56-8307-01 3 197411072 197411072 C A KIAA0226 Missense_Mutation p.R601S 0.37 tolerated(0.12) possibly_damaging(0.797) TCGA-56-8307-01 3 39453524 39453524 C T RPSA Silent p.P255P 0.44 TCGA-56-8307-01 3 50289943 50289943 G T GNAI2 Missense_Mutation p.Q92H 0.36 tolerated(0.09) benign(0.002) TCGA-56-8307-01 3 50402390 50402390 C G CACNA2D2 Missense_Mutation p.E1081Q 0.35 tolerated(0.15) benign(0.047) TCGA-56-8307-01 3 75679970 75679970 G T MIR1324 RNA 0.06 TCGA-56-8307-01 3 89448579 89448579 G C EPHA3 Missense_Mutation p.A515P 0.41 tolerated(0.08) probably_damaging(1) TCGA-56-8307-01 3 96945200 96945200 G T EPHA6 Missense_Mutation p.V403F 0.45 tolerated(0.59) benign(0.22) TCGA-56-8307-01 3 98072854 98072854 C A OR5K4 Missense_Mutation p.R53S 0.49 tolerated(0.32) benign(0.005) TCGA-56-8307-01 4 104044074 104044074 T A CENPE Missense_Mutation p.N2366I 0.36 benign(0.046) TCGA-56-8307-01 4 107258106 107258106 G C AIMP1 Missense_Mutation p.M252I 0.32 deleterious(0) probably_damaging(0.945) TCGA-56-8307-01 4 126373519 126373519 T C FAT4 Missense_Mutation p.F3783S 0.40 benign(0.177) TCGA-56-8307-01 4 138452815 138452815 G T PCDH18 Missense_Mutation p.P143H 0.36 deleterious(0.02) probably_damaging(0.919) TCGA-56-8307-01 4 140640673 140640673 C G MAML3 Missense_Mutation p.S1074T 0.21 benign(0.003) TCGA-56-8307-01 4 155507652 155507652 G T FGA Missense_Mutation p.P310H 0.28 deleterious(0.01) possibly_damaging(0.893) TCGA-56-8307-01 4 163032515 163032515 C A FSTL5 Nonsense_Mutation p.G12* 0.30 TCGA-56-8307-01 4 2831866 2831866 G A SH3BP2 Silent p.P468P 0.31 TCGA-56-8307-01 4 3240677 3240677 G C HTT Missense_Mutation p.A3063P 0.21 probably_damaging(1) TCGA-56-8307-01 4 3432187 3432187 G T RGS12 Missense_Mutation p.G1207W 0.33 deleterious(0) probably_damaging(1) TCGA-56-8307-01 4 42965029 42965029 A T GRXCR1 Nonsense_Mutation p.K169* 0.34 TCGA-56-8307-01 4 49005776 49005776 T A CWH43 Missense_Mutation p.L276H 0.33 deleterious(0) probably_damaging(0.938) TCGA-56-8307-01 4 49040172 49040172 A T CWH43 Missense_Mutation p.Q593L 0.10 tolerated(0.15) benign(0.211) TCGA-56-8307-01 4 55573379 55573379 G T KIT Missense_Mutation p.Q347H 0.32 tolerated(0.52) benign(0.001) TCGA-56-8307-01 4 62599199 62599199 C T LPHN3 Silent p.N374N 0.23 TCGA-56-8307-01 4 71255750 71255750 T A SMR3B 3'UTR 0.52 TCGA-56-8307-01 4 71508611 71508611 C A ENAM Missense_Mutation p.Q490K 0.26 deleterious(0.01) possibly_damaging(0.584) TCGA-56-8307-01 5 102465358 102465358 G C PPIP5K2 Missense_Mutation p.R22P 0.30 tolerated_low_confidence(0.06) benign(0.192) TCGA-56-8307-01 5 109091071 109091071 G A MAN2A1 Nonsense_Mutation p.W250* 0.42 TCGA-56-8307-01 5 109091072 109091072 G T MAN2A1 Missense_Mutation p.W250C 0.43 deleterious(0) probably_damaging(0.998) TCGA-56-8307-01 5 112770310 112770310 T A TSSK1B Missense_Mutation p.Y76F 0.52 tolerated(0.13) benign(0.159) TCGA-56-8307-01 5 114916322 114916322 T A TMED7-TICAM2 Missense_Mutation p.Q380L 0.39 deleterious_low_confidence(0.02) benign(0.053) TCGA-56-8307-01 5 118556211 118556211 A T DMXL1 Missense_Mutation p.Q2665H 0.33 deleterious(0) probably_damaging(0.999) TCGA-56-8307-01 5 121187957 121187957 A T FTMT Missense_Mutation p.Y100F 0.51 deleterious(0.03) possibly_damaging(0.777) TCGA-56-8307-01 5 135207436 135207436 C A SLC25A48 Intron 0.35 TCGA-56-8307-01 5 140188228 140188228 G C PCDHA4 Missense_Mutation p.E486Q 0.25 tolerated_low_confidence(0.07) possibly_damaging(0.809) TCGA-56-8307-01 5 140250396 140250396 G - PCDHA11 Frame_Shift_Del p.G570Afs*10 0.24 TCGA-56-8307-01 5 140553065 140553065 G A PCDHB7 Missense_Mutation p.G217S 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.795) TCGA-56-8307-01 5 140563666 140563666 G T PCDHB16 Missense_Mutation p.G511V 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-56-8307-01 5 140788044 140788044 G T PCDHGB6 Missense_Mutation p.R92L 0.35 deleterious(0) probably_damaging(0.999) TCGA-56-8307-01 5 140801654 140801654 G - PCDHGA11 Frame_Shift_Del p.S287Tfs*49 0.23 TCGA-56-8307-01 5 153182050 153182050 G A GRIA1 Silent p.K850K 0.25 TCGA-56-8307-01 5 157065674 157065674 C G SOX30 Missense_Mutation p.V482L 0.33 deleterious(0.01) benign(0.008) TCGA-56-8307-01 5 161116068 161116068 G T GABRA6 Silent p.T113T 0.33 TCGA-56-8307-01 5 164028095 164028095 G A CTC-340A15.2 RNA 0.38 TCGA-56-8307-01 5 176306901 176306901 C A UNC5A 3'UTR 0.60 TCGA-56-8307-01 5 21817215 21817215 A T CDH12 Missense_Mutation p.S281T 0.20 tolerated(0.13) benign(0.394) TCGA-56-8307-01 5 24537584 24537584 G T CDH10 Nonsense_Mutation p.S144* 0.32 TCGA-56-8307-01 5 40936571 40936571 G T C7 Nonsense_Mutation p.E138* 0.24 TCGA-56-8307-01 5 423962 423962 A G AHRR Missense_Mutation p.D197G 0.27 deleterious(0.03) possibly_damaging(0.734) TCGA-56-8307-01 5 63256387 63256387 C A HTR1A Missense_Mutation p.W387L 0.28 deleterious(0) probably_damaging(1) TCGA-56-8307-01 5 63256568 63256568 G T HTR1A Missense_Mutation p.R327S 0.42 tolerated(0.2) possibly_damaging(0.46) TCGA-56-8307-01 5 65458268 65458268 A T SREK1 Missense_Mutation p.E201D 0.31 tolerated(0.17) benign(0.171) TCGA-56-8307-01 5 94818181 94818181 C G TTC37 Missense_Mutation p.W1403S 0.41 deleterious(0) probably_damaging(1) TCGA-56-8307-01 6 101091954 101091954 T A ASCC3 Missense_Mutation p.N1229Y 0.30 deleterious(0) probably_damaging(0.99) TCGA-56-8307-01 6 106967369 106967369 A T AIM1 Silent p.P354P 0.13 TCGA-56-8307-01 6 11191258 11191258 C G NEDD9 Missense_Mutation p.D282H 0.14 deleterious(0) possibly_damaging(0.759) TCGA-56-8307-01 6 116265426 116265426 C - FRK Frame_Shift_Del p.G374Dfs*8 0.22 TCGA-56-8307-01 6 116288773 116288773 T A FRK Missense_Mutation p.E247V 0.38 deleterious(0) probably_damaging(0.999) TCGA-56-8307-01 6 116441205 116441205 A T COL10A1 3'UTR 0.25 TCGA-56-8307-01 6 121482137 121482137 C A TBC1D32 Missense_Mutation p.G879V 0.33 deleterious(0) probably_damaging(1) TCGA-56-8307-01 6 127797042 127797042 A T SOGA3 Missense_Mutation p.L710Q 0.24 tolerated(0.08) probably_damaging(0.979) TCGA-56-8307-01 6 132058534 132058534 T A ENPP3 Missense_Mutation p.I710N 0.34 deleterious(0) probably_damaging(0.987) TCGA-56-8307-01 6 133783616 133783616 G C EYA4 Splice_Site p.X194_splice 0.29 TCGA-56-8307-01 6 135518252 135518252 A G MYB Missense_Mutation p.K453E 0.30 tolerated(1) benign(0.087) TCGA-56-8307-01 6 136582547 136582547 A C BCLAF1 Silent p.R871R 0.08 TCGA-56-8307-01 6 139581549 139581549 C A TXLNB Missense_Mutation p.R303I 0.16 deleterious(0.02) probably_damaging(0.998) TCGA-56-8307-01 6 148852679 148852679 A C SASH1 Silent p.G482G 0.09 TCGA-56-8307-01 6 152457844 152457844 C T SYNE1 Missense_Mutation p.R8523H 0.24 probably_damaging(0.999) TCGA-56-8307-01 6 158924588 158924588 A G TULP4 Missense_Mutation p.D1298G 0.13 deleterious_low_confidence(0.01) benign(0.064) TCGA-56-8307-01 6 166944751 166944751 G T RPS6KA2 Silent p.A97A 0.26 TCGA-56-8307-01 6 166952243 166952243 G A RPS6KA2 Silent p.I51I 0.25 TCGA-56-8307-01 6 18121730 18121730 T C NHLRC1 Missense_Mutation p.T370A 0.40 tolerated(0.48) benign(0.008) TCGA-56-8307-01 6 24486307 24486307 C A GPLD1 Missense_Mutation p.R50I 0.28 deleterious(0) benign(0.073) TCGA-56-8307-01 6 25967002 25967002 C G TRIM38 Silent p.L84L 0.11 TCGA-56-8307-01 6 26199203 26199203 T A HIST1H2AD Missense_Mutation p.N90I 0.34 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-56-8307-01 6 28195076 28195076 C A ZSCAN9 Silent p.R72R 0.28 TCGA-56-8307-01 6 29141637 29141637 C G OR2J2 Silent p.T75T 0.31 TCGA-56-8307-01 6 31124712 31124712 C G CCHCR1 Missense_Mutation p.G98A 0.14 deleterious(0.04) possibly_damaging(0.896) TCGA-56-8307-01 6 31901973 31901973 G T C2 Missense_Mutation p.R249L 0.31 tolerated(0.08) possibly_damaging(0.908) TCGA-56-8307-01 6 36298276 36298276 T C C6orf222 Silent p.P64P 0.27 TCGA-56-8307-01 6 38875765 38875765 G A DNAH8 Missense_Mutation p.E2911K 0.28 probably_damaging(1) TCGA-56-8307-01 6 39073153 39073153 C A SAYSD1 3'UTR 0.27 TCGA-56-8307-01 6 39847175 39847175 T C DAAM2 Silent p.S589S 0.24 TCGA-56-8307-01 6 44148730 44148730 T A CAPN11 Missense_Mutation p.M622K 0.29 deleterious(0) benign(0.333) TCGA-56-8307-01 6 49660417 49660417 C T CRISP2 3'UTR 0.35 TCGA-56-8307-01 6 49803029 49803029 C A CRISP1 Nonstop_Mutation p.*250Yext*11 0.29 TCGA-56-8307-01 6 56458839 56458839 T G DST Missense_Mutation p.E1493D 0.10 benign(0.015) TCGA-56-8307-01 6 57512541 57512541 G T PRIM2 3'UTR 0.07 TCGA-56-8307-01 6 57512665 57512665 T C PRIM2 3'UTR 0.12 TCGA-56-8307-01 6 70642685 70642685 A G COL19A1 Missense_Mutation p.H226R 0.25 tolerated(0.36) unknown(0) TCGA-56-8307-01 6 72945370 72945370 G T RIMS1 Missense_Mutation p.R599L 0.26 deleterious(0) probably_damaging(0.934) TCGA-56-8307-01 6 74135210 74135210 G C MB21D1 Missense_Mutation p.H437D 0.29 deleterious(0) probably_damaging(0.999) TCGA-56-8307-01 6 7578696 7578696 G T DSP Splice_Site p.X996_splice 0.29 TCGA-56-8307-01 6 76407185 76407185 A G SENP6 Missense_Mutation p.H747R 0.19 deleterious(0.02) probably_damaging(0.929) TCGA-56-8307-01 6 84233872 84233872 C T PRSS35 Missense_Mutation p.R238W 0.23 deleterious(0) possibly_damaging(0.724) TCGA-56-8307-01 6 84834965 84834965 T A KIAA1009 Missense_Mutation p.T1346S 0.30 tolerated(0.15) benign(0.094) TCGA-56-8307-01 6 86238004 86238004 C A SNX14 Missense_Mutation p.R657S 0.19 deleterious(0.03) possibly_damaging(0.908) TCGA-56-8307-01 6 88853872 88853872 G A CNR1 Silent p.L374L 0.28 TCGA-56-8307-01 6 96974312 96974312 G A UFL1 Splice_Site p.X155_splice 0.33 TCGA-56-8307-01 7 117171039 117171039 G T CFTR Silent p.A120A 0.26 TCGA-56-8307-01 7 120781010 120781010 G T CPED1 Missense_Mutation p.G610V 0.27 deleterious(0.04) probably_damaging(0.939) TCGA-56-8307-01 7 124463992 124463992 T A POT1 3'UTR 0.39 TCGA-56-8307-01 7 130144843 130144843 A G MEST Silent p.L318L 0.37 TCGA-56-8307-01 7 131864620 131864620 G T PLXNA4 Missense_Mutation p.L1234I 0.36 deleterious(0.01) probably_damaging(0.96) TCGA-56-8307-01 7 140246715 140246715 G C DENND2A Missense_Mutation p.R688G 0.33 deleterious(0.02) probably_damaging(1) TCGA-56-8307-01 7 143793034 143793034 C A OR2A12 Missense_Mutation p.S278R 0.28 deleterious(0) possibly_damaging(0.908) TCGA-56-8307-01 7 144098177 144098177 C A NOBOX Missense_Mutation p.C269F 0.22 deleterious(0.05) benign(0.349) TCGA-56-8307-01 7 148801409 148801409 C A ZNF425 Missense_Mutation p.K518N 0.28 tolerated(0.08) benign(0.155) TCGA-56-8307-01 7 149191348 149191348 T A ZNF746 Missense_Mutation p.R91W 0.19 deleterious(0) possibly_damaging(0.852) TCGA-56-8307-01 7 149519067 149519067 C T SSPO RNA 0.38 TCGA-56-8307-01 7 16823039 16823039 C T TSPAN13 Intron 0.27 TCGA-56-8307-01 7 23296525 23296525 G T GPNMB Missense_Mutation p.A128S 0.36 tolerated(0.38) benign(0.002) TCGA-56-8307-01 7 34698024 34698024 C A NPSR1 5'UTR 0.33 TCGA-56-8307-01 7 36552908 36552908 G C AOAH Missense_Mutation p.P560A 0.39 deleterious(0) probably_damaging(0.999) TCGA-56-8307-01 7 39247148 39247148 C G POU6F2 Missense_Mutation p.T147S 0.28 deleterious_low_confidence(0.01) probably_damaging(0.952) TCGA-56-8307-01 7 41739744 41739744 G C INHBA Missense_Mutation p.P77A 0.32 tolerated(0.31) possibly_damaging(0.698) TCGA-56-8307-01 7 47925506 47925506 C A PKD1L1 Missense_Mutation p.V995L 0.31 tolerated(0.76) benign(0.003) TCGA-56-8307-01 7 77402502 77402502 G A RSBN1L Missense_Mutation p.R555Q 0.05 deleterious(0) probably_damaging(1) TCGA-56-8307-01 7 80433464 80433464 C T SEMA3C Silent p.R253R 0.35 TCGA-56-8307-01 7 82595572 82595572 C T PCLO Missense_Mutation p.E1178K 0.18 unknown(0) TCGA-56-8307-01 7 92146600 92146600 C G PEX1 Missense_Mutation p.G410A 0.22 deleterious(0) probably_damaging(0.998) TCGA-56-8307-01 8 113243775 113243775 C T CSMD3 Silent p.L3609L 0.21 TCGA-56-8307-01 8 117954824 117954824 C G AARD Missense_Mutation p.L118V 0.19 deleterious(0) possibly_damaging(0.801) TCGA-56-8307-01 8 11970533 11970533 G T ZNF705D Nonsense_Mutation p.E257* 0.28 TCGA-56-8307-01 8 121180417 121180417 A G COL14A1 Missense_Mutation p.R123G 0.23 tolerated(0.13) benign(0.14) TCGA-56-8307-01 8 133905967 133905967 G A TG Missense_Mutation p.V932I 0.31 deleterious(0.04) benign(0.009) TCGA-56-8307-01 8 13948001 13948001 C A SGCZ Missense_Mutation p.G297V 0.18 deleterious(0) possibly_damaging(0.663) TCGA-56-8307-01 8 146033237 146033237 C G ZNF517 Missense_Mutation p.S312R 0.26 deleterious(0) possibly_damaging(0.765) TCGA-56-8307-01 8 17067530 17067530 G C ZDHHC2 Missense_Mutation p.D274H 0.35 deleterious(0) probably_damaging(0.999) TCGA-56-8307-01 8 20072436 20072436 C T ATP6V1B2 Silent p.N345N 0.14 TCGA-56-8307-01 8 2092770 2092770 G C MYOM2 Missense_Mutation p.K1421N 0.23 deleterious(0) possibly_damaging(0.514) TCGA-56-8307-01 8 33455066 33455066 G T DUSP26 5'UTR 0.29 TCGA-56-8307-01 8 37632910 37632910 G A PROSC Missense_Mutation p.A170T 0.14 tolerated(0.52) benign(0.001) TCGA-56-8307-01 8 43147704 43147704 A T POTEA RNA 0.25 TCGA-56-8307-01 8 59410911 59410911 A T CYP7A1 Silent p.V66V 0.16 TCGA-56-8307-01 8 59510063 59510063 C A NSMAF Nonsense_Mutation p.E590* 0.31 TCGA-56-8307-01 8 6599249 6599249 G C AGPAT5 Missense_Mutation p.S188T 0.15 deleterious(0) probably_damaging(0.989) TCGA-56-8307-01 8 75227786 75227786 C A JPH1 Missense_Mutation p.G150V 0.40 deleterious(0) probably_damaging(1) TCGA-56-8307-01 8 77619960 77619960 G T ZFHX4 Missense_Mutation p.V924L 0.30 benign(0.198) TCGA-56-8307-01 8 77762550 77762550 C A ZFHX4 Silent p.R1306R 0.18 TCGA-56-8307-01 8 77764411 77764411 C G ZFHX4 Missense_Mutation p.P1752A 0.26 possibly_damaging(0.728) TCGA-56-8307-01 8 82371421 82371421 T C FABP9 Silent p.T75T 0.31 TCGA-56-8307-01 8 82606090 82606090 C A SLC10A5 Missense_Mutation p.G373V 0.20 deleterious(0) probably_damaging(0.999) TCGA-56-8307-01 8 87738858 87738858 C T CNGB3 Missense_Mutation p.G80E 0.35 tolerated(1) benign(0.001) TCGA-56-8307-01 8 89086884 89086884 T C MMP16 Missense_Mutation p.S391G 0.25 tolerated(0.24) benign(0) TCGA-56-8307-01 9 103278966 103278966 G T TMEFF1 Missense_Mutation p.G158V 0.45 deleterious(0) probably_damaging(0.998) TCGA-56-8307-01 9 109687455 109687455 G T ZNF462 Missense_Mutation p.G421V 0.37 probably_damaging(0.953) TCGA-56-8307-01 9 111849549 111849549 C A TMEM245 Missense_Mutation p.W408C 0.39 tolerated(0.16) benign(0.033) TCGA-56-8307-01 9 130635308 130635308 C A AK1 Missense_Mutation p.V14L 0.36 tolerated(0.63) benign(0.018) TCGA-56-8307-01 9 131708120 131708120 G T DOLK Missense_Mutation p.A488D 0.52 tolerated(0.19) possibly_damaging(0.815) TCGA-56-8307-01 9 138831519 138831519 C A UBAC1 Silent p.A321A 0.45 TCGA-56-8307-01 9 14722194 14722194 C A CER1 Missense_Mutation p.W159C 0.56 deleterious(0) possibly_damaging(0.86) TCGA-56-8307-01 9 14722195 14722195 C A CER1 Missense_Mutation p.W159L 0.54 deleterious(0.04) benign(0.236) TCGA-56-8307-01 9 43627599 43627599 A G SPATA31A6 Missense_Mutation p.L363S 0.25 deleterious(0.03) probably_damaging(0.989) TCGA-56-8307-01 9 73213588 73213588 T C TRPM3 Splice_Site p.X921_splice 0.57 TCGA-56-8307-01 9 79322529 79322529 G A PRUNE2 Missense_Mutation p.S1554L 0.66 deleterious(0.03) benign(0.005) TCGA-56-8307-01 X 105451315 105451315 T A MUM1L1 Missense_Mutation p.D630E 0.31 deleterious(0.02) benign(0.306) TCGA-56-8307-01 X 106396453 106396453 T C NUP62CL Missense_Mutation p.D160G 0.17 tolerated(0.14) benign(0.005) TCGA-56-8307-01 X 108636231 108636231 C A GUCY2F Silent p.R826R 0.31 TCGA-56-8307-01 X 109694531 109694531 T A RGAG1 Missense_Mutation p.M229K 0.50 deleterious(0) probably_damaging(0.911) TCGA-56-8307-01 X 123556175 123556175 C A TENM1 Missense_Mutation p.G1473V 0.42 deleterious(0) probably_damaging(0.999) TCGA-56-8307-01 X 132351780 132351780 C A TFDP3 Missense_Mutation p.V170L 0.62 deleterious(0) probably_damaging(0.954) TCGA-56-8307-01 X 135429747 135429747 G T GPR112 Missense_Mutation p.L1294F 0.54 tolerated(0.07) possibly_damaging(0.494) TCGA-56-8307-01 X 139586876 139586876 G T SOX3 Missense_Mutation p.A117E 0.22 tolerated(0.16) probably_damaging(0.983) TCGA-56-8307-01 X 142967377 142967377 C A UBE2NL Missense_Mutation p.L59I 0.36 deleterious(0.02) probably_damaging(0.937) TCGA-56-8307-01 X 144904764 144904764 G T SLITRK2 Missense_Mutation p.R274M 0.20 tolerated(0.09) possibly_damaging(0.713) TCGA-56-8307-01 X 144904765 144904765 G T SLITRK2 Missense_Mutation p.R274S 0.21 tolerated(0.23) benign(0.158) TCGA-56-8307-01 X 144905618 144905618 G C SLITRK2 Missense_Mutation p.E559Q 0.15 tolerated(0.25) possibly_damaging(0.469) TCGA-56-8307-01 X 148798460 148798460 C T MAGEA11 3'UTR 0.34 TCGA-56-8307-01 X 150869363 150869363 T A PRRG3 Missense_Mutation p.L185Q 0.26 deleterious(0) possibly_damaging(0.747) TCGA-56-8307-01 X 151336618 151336618 C A GABRA3 3'UTR 0.33 TCGA-56-8307-01 X 151358201 151358201 C A GABRA3 Splice_Site p.X381_splice 0.31 TCGA-56-8307-01 X 152226411 152226411 G A PNMA3 Silent p.E333E 0.34 TCGA-56-8307-01 X 15268651 15268651 C A ASB9 Missense_Mutation p.G157W 0.39 deleterious(0) probably_damaging(1) TCGA-56-8307-01 X 152939535 152939535 C A PNCK Missense_Mutation p.W32C 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.878) TCGA-56-8307-01 X 17750561 17750561 C T NHS Missense_Mutation p.R1624C 0.29 deleterious(0) probably_damaging(0.999) TCGA-56-8307-01 X 18213464 18213464 T A BEND2 Missense_Mutation p.S378C 0.33 tolerated(0.15) benign(0.004) TCGA-56-8307-01 X 19971108 19971108 G - CXorf23 Frame_Shift_Del p.Q543Rfs*3 0.16 TCGA-56-8307-01 X 19984559 19984559 T C CXorf23 Missense_Mutation p.R84G 0.28 deleterious(0.02) possibly_damaging(0.856) TCGA-56-8307-01 X 21995345 21995345 G T SMS Missense_Mutation p.G166W 0.31 deleterious(0) probably_damaging(0.996) TCGA-56-8307-01 X 23929973 23929973 G - CXorf58 Frame_Shift_Del 0.19 TCGA-56-8307-01 X 2994677 2994677 G A ARSF Missense_Mutation p.A84T 0.29 deleterious(0) probably_damaging(0.987) TCGA-56-8307-01 X 30260347 30260347 C A MAGEB4 Missense_Mutation p.A32E 0.41 tolerated(0.07) benign(0.329) TCGA-56-8307-01 X 3229337 3229337 C A MXRA5 Missense_Mutation p.V2303F 0.37 deleterious(0) probably_damaging(0.995) TCGA-56-8307-01 X 3239273 3239273 C A MXRA5 Missense_Mutation p.A1485S 0.32 tolerated(0.48) benign(0) TCGA-56-8307-01 X 3241621 3241621 G C MXRA5 Missense_Mutation p.S702W 0.38 deleterious(0) probably_damaging(1) TCGA-56-8307-01 X 34149739 34149739 C A FAM47A Silent p.P219P 0.35 TCGA-56-8307-01 X 37526660 37526660 C A LANCL3 Missense_Mutation p.H341N 0.35 deleterious(0) probably_damaging(0.999) TCGA-56-8307-01 X 44929135 44929135 G T KDM6A Missense_Mutation p.E745D 0.22 tolerated_low_confidence(0.51) benign(0.002) TCGA-56-8307-01 X 44929136 44929136 G T KDM6A Nonsense_Mutation p.G746* 0.24 TCGA-56-8307-01 X 46359970 46359970 G T ZNF674 Missense_Mutation p.H352N 0.39 deleterious(0) benign(0.006) TCGA-56-8307-01 X 47072580 47072580 G C UBA1 Missense_Mutation p.Q946H 0.18 deleterious(0) possibly_damaging(0.516) TCGA-56-8307-01 X 47835818 47835818 C A ZNF182 Missense_Mutation p.Q556H 0.30 tolerated(0.16) probably_damaging(0.982) TCGA-56-8307-01 X 47976520 47976520 G T SSX6 3'Flank 0.37 TCGA-56-8307-01 X 48545167 48545167 C T WAS Intron 0.34 TCGA-56-8307-01 X 48564689 48564689 C A SUV39H1 Missense_Mutation p.Q288K 0.35 tolerated(0.66) benign(0.026) TCGA-56-8307-01 X 48895759 48895759 A T TFE3 Missense_Mutation p.M248K 0.09 deleterious(0.01) benign(0.042) TCGA-56-8307-01 X 49454107 49454107 G T PAGE1 Missense_Mutation p.P111Q 0.39 deleterious(0.02) probably_damaging(0.968) TCGA-56-8307-01 X 54578000 54578000 G T GNL3L Splice_Site p.X288_splice 0.39 TCGA-56-8307-01 X 54841946 54841946 C A MAGED2 Missense_Mutation p.A551D 0.18 deleterious(0) unknown(0) TCGA-56-8307-01 X 71349658 71349658 G T RGAG4 3'UTR 0.32 TCGA-56-8308-01 10 102057205 102057205 C T PKD2L1 Missense_Mutation p.G297D 0.14 deleterious(0) probably_damaging(0.997) TCGA-56-8308-01 10 102256097 102256097 C T SEC31B Missense_Mutation p.R743K 0.16 tolerated(1) benign(0.002) TCGA-56-8308-01 10 105837211 105837211 C T COL17A1 Silent p.L57L 0.18 TCGA-56-8308-01 10 116735131 116735131 C G TRUB1 Missense_Mutation p.T348R 0.14 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-56-8308-01 10 117853235 117853235 G T GFRA1 Missense_Mutation p.F331L 0.08 tolerated(1) benign(0.118) TCGA-56-8308-01 10 118084526 118084526 G A CCDC172 Translation_Start_Site p.M1? 0.27 deleterious(0) probably_damaging(0.991) TCGA-56-8308-01 10 127541763 127541763 T C BCCIP Missense_Mutation p.L307P 0.33 tolerated_low_confidence(0.08) unknown(0) TCGA-56-8308-01 10 1284240 1284240 G A ADARB2 Missense_Mutation p.R439W 0.19 deleterious(0) probably_damaging(0.99) TCGA-56-8308-01 10 135015201 135015201 C A KNDC1 Missense_Mutation p.D1062E 0.44 tolerated(0.58) benign(0.037) TCGA-56-8308-01 10 14572392 14572392 G T FAM107B Missense_Mutation p.P198T 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-56-8308-01 10 15170396 15170396 T - NMT2 Frame_Shift_Del p.R318Efs*3 0.16 TCGA-56-8308-01 10 16949584 16949584 A T CUBN Missense_Mutation p.M2543K 0.29 deleterious(0) probably_damaging(0.992) TCGA-56-8308-01 10 47087859 47087859 C T NPY4R Missense_Mutation p.T359M 0.15 deleterious(0.05) possibly_damaging(0.457) TCGA-56-8308-01 10 51768755 51768755 A G AGAP6 Silent p.L290L 0.37 TCGA-56-8308-01 10 5781887 5781887 A T FAM208B Missense_Mutation p.H585L 0.20 deleterious(0) probably_damaging(0.959) TCGA-56-8308-01 10 69926134 69926134 C A MYPN Missense_Mutation p.P562T 0.21 tolerated(0.15) benign(0.075) TCGA-56-8308-01 10 7608006 7608006 G T ITIH5 Nonsense_Mutation p.C838* 0.13 TCGA-56-8308-01 10 8006421 8006421 G A TAF3 Silent p.K316K 0.48 TCGA-56-8308-01 10 82187205 82187205 G C FAM213A Missense_Mutation p.E177Q 0.29 deleterious(0) probably_damaging(0.997) TCGA-56-8308-01 10 87407033 87407033 C G GRID1 Missense_Mutation p.E707Q 0.21 tolerated(0.56) probably_damaging(0.982) TCGA-56-8308-01 10 98108075 98108075 C G OPALIN Missense_Mutation p.E74Q 0.15 deleterious_low_confidence(0.02) possibly_damaging(0.859) TCGA-56-8308-01 10 98744305 98744305 T G C10orf12 Missense_Mutation p.V1053G 0.10 deleterious(0) probably_damaging(0.997) TCGA-56-8308-01 11 123811133 123811133 C A OR4D5 Silent p.A270A 0.41 TCGA-56-8308-01 11 123814163 123814163 C G OR6T1 Missense_Mutation p.R128P 0.50 deleterious(0.03) possibly_damaging(0.452) TCGA-56-8308-01 11 124481538 124481538 G T PANX3 Missense_Mutation p.R29L 0.35 deleterious(0) benign(0.002) TCGA-56-8308-01 11 18158884 18158884 C T MRGPRX3 Silent p.N45N 0.22 TCGA-56-8308-01 11 21592309 21592309 G T NELL1 Splice_Site p.X661_splice 0.36 TCGA-56-8308-01 11 22360023 22360023 C A SLC17A6 5'UTR 0.38 TCGA-56-8308-01 11 33689595 33689595 C T KIAA1549L Silent p.D1815D 0.22 TCGA-56-8308-01 11 44077749 44077749 T G ACCSL Silent p.S400S 0.15 TCGA-56-8308-01 11 48346799 48346799 G T OR4C3 Missense_Mutation p.A103S 0.18 tolerated(0.15) possibly_damaging(0.447) TCGA-56-8308-01 11 4945470 4945470 A G OR51G1 Missense_Mutation p.C34R 0.57 deleterious(0) possibly_damaging(0.86) TCGA-56-8308-01 11 55033167 55033167 G C TRIM48 Missense_Mutation p.W184S 0.17 deleterious(0) possibly_damaging(0.69) TCGA-56-8308-01 11 55065021 55065021 C A TRIM51HP RNA 0.20 TCGA-56-8308-01 11 55418397 55418397 C T OR4S2 Silent p.N6N 0.44 TCGA-56-8308-01 11 55418591 55418591 A G OR4S2 Missense_Mutation p.Y71C 0.61 deleterious(0.03) possibly_damaging(0.695) TCGA-56-8308-01 11 55563747 55563747 C A OR5D14 Missense_Mutation p.A239D 0.20 deleterious(0) possibly_damaging(0.451) TCGA-56-8308-01 11 55563748 55563748 C A OR5D14 Silent p.A239A 0.21 TCGA-56-8308-01 11 55890718 55890718 T G OR8H3 Nonsense_Mutation p.Y290* 0.16 TCGA-56-8308-01 11 587284 587284 G T PHRF1 Silent p.G80G 0.38 TCGA-56-8308-01 11 59132426 59132426 T C OR5AN1 Silent p.L165L 0.28 TCGA-56-8308-01 11 59405818 59405818 G A PATL1 3'UTR 0.08 TCGA-56-8308-01 11 59410433 59410433 G A PATL1 Nonsense_Mutation p.R657* 0.15 TCGA-56-8308-01 11 62286904 62286904 T C AHNAK Silent p.S4995S 0.32 TCGA-56-8308-01 11 6245100 6245100 C T FAM160A2 Missense_Mutation p.D173N 0.47 deleterious(0) benign(0.415) TCGA-56-8308-01 11 6261809 6261809 T C CNGA4 Missense_Mutation p.M262T 0.23 deleterious(0.04) benign(0.114) TCGA-56-8308-01 11 63669737 63669737 C A MARK2 Missense_Mutation p.S390Y 0.13 deleterious(0) probably_damaging(0.968) TCGA-56-8308-01 11 64715273 64715273 C T C11orf85 Missense_Mutation p.S123N 0.53 tolerated(0.11) possibly_damaging(0.682) TCGA-56-8308-01 11 67219230 67219230 C T GPR152 Silent p.P322P 0.10 TCGA-56-8308-01 11 67219487 67219487 G T GPR152 Missense_Mutation p.R237S 0.58 deleterious(0) possibly_damaging(0.688) TCGA-56-8308-01 11 71726490 71726490 C G NUMA1 Missense_Mutation p.A687P 0.50 possibly_damaging(0.84) TCGA-56-8308-01 11 74875072 74875072 G A SLCO2B1 Missense_Mutation p.S71N 0.33 deleterious(0) possibly_damaging(0.805) TCGA-56-8308-01 11 85437116 85437116 C A SYTL2 Silent p.T128T 0.18 TCGA-56-8308-01 12 100897183 100897183 G T NR1H4 Missense_Mutation p.Q6H 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.502) TCGA-56-8308-01 12 102054957 102054957 C A MYBPC1 Missense_Mutation p.A625E 0.37 deleterious(0.02) probably_damaging(0.998) TCGA-56-8308-01 12 109042474 109042474 C G CORO1C Silent p.V404V 0.17 TCGA-56-8308-01 12 113907123 113907123 G A LHX5 Silent p.C67C 0.27 TCGA-56-8308-01 12 20886013 20886013 G T SLCO1C1 Missense_Mutation p.A453S 0.29 deleterious(0.01) probably_damaging(0.994) TCGA-56-8308-01 12 23757351 23757351 C T SOX5 Silent p.K378K 0.38 TCGA-56-8308-01 12 313729 313729 C T SLC6A12 Splice_Site p.X117_splice 0.28 TCGA-56-8308-01 12 44926395 44926395 C A NELL2 Silent p.G641G 0.26 TCGA-56-8308-01 12 45173495 45173495 C A NELL2 Missense_Mutation p.G236V 0.28 deleterious(0.01) probably_damaging(0.966) TCGA-56-8308-01 12 4554496 4554496 C A FGF6 Missense_Mutation p.G81W 0.22 deleterious(0.01) probably_damaging(1) TCGA-56-8308-01 12 461420 461420 C T KDM5A Missense_Mutation p.G367E 0.33 deleterious(0) possibly_damaging(0.78) TCGA-56-8308-01 12 48110828 48110828 G T ENDOU Missense_Mutation p.S132R 0.30 tolerated(0.05) benign(0.005) TCGA-56-8308-01 12 48723066 48723066 A C H1FNT 5'UTR 0.18 TCGA-56-8308-01 12 54963356 54963356 T G PDE1B Missense_Mutation p.V146G 0.19 deleterious(0.02) benign(0.045) TCGA-56-8308-01 12 56092537 56092537 C T ITGA7 Missense_Mutation p.G323S 0.18 tolerated(1) benign(0.007) TCGA-56-8308-01 12 77439963 77439963 C T E2F7 Silent p.E228E 0.26 TCGA-56-8308-01 12 78569204 78569204 C A NAV3 Missense_Mutation p.N1700K 0.53 tolerated(0.29) benign(0.381) TCGA-56-8308-01 12 7972160 7972160 G T SLC2A14 Missense_Mutation p.A353E 0.31 deleterious(0) probably_damaging(0.982) TCGA-56-8308-01 12 79842856 79842856 C T SYT1 Silent p.T407T 0.30 TCGA-56-8308-01 12 94688266 94688266 C A PLXNC1 Nonsense_Mutation p.S1295* 0.36 TCGA-56-8308-01 12 96421230 96421230 G A LTA4H Nonsense_Mutation p.Q135* 0.28 TCGA-56-8308-01 13 108861536 108861536 C A LIG4 Missense_Mutation p.G694V 0.30 deleterious(0) possibly_damaging(0.865) TCGA-56-8308-01 13 25367255 25367255 C T RNF17 Silent p.Y337Y 0.38 TCGA-56-8308-01 13 25487087 25487087 C A CENPJ Missense_Mutation p.R26L 0.50 deleterious(0) probably_damaging(0.999) TCGA-56-8308-01 14 103180909 103180909 G T RCOR1 Silent p.T336T 0.38 TCGA-56-8308-01 14 104378892 104378892 C G C14orf2 3'UTR 0.14 TCGA-56-8308-01 14 104464961 104464961 T A TDRD9 Missense_Mutation p.V460D 0.17 deleterious(0) probably_damaging(0.996) TCGA-56-8308-01 14 106208258 106208258 G T IGHG1 Silent p.P214P 0.30 TCGA-56-8308-01 14 106235854 106235854 C T IGHG3 Missense_Mutation p.R285Q 0.31 tolerated(0.78) benign(0.002) TCGA-56-8308-01 14 106667674 106667674 T A IGHV3-20 Silent p.R86R 0.36 TCGA-56-8308-01 14 106877763 106877763 C A IGHV4-39 Silent p.G77G 0.31 TCGA-56-8308-01 14 36064912 36064912 G A RALGAPA1 Silent p.T1873T 0.49 TCGA-56-8308-01 14 45564527 45564527 A G PRPF39 Missense_Mutation p.T29A 0.36 tolerated_low_confidence(0.95) benign(0) TCGA-56-8308-01 14 47426797 47426797 A - MDGA2 Frame_Shift_Del p.R624Efs*5 0.15 TCGA-56-8308-01 14 55642616 55642616 A T DLGAP5 Missense_Mutation p.H390Q 0.43 tolerated(0.19) benign(0.02) TCGA-56-8308-01 14 58030884 58030884 G T SLC35F4 Missense_Mutation p.A512D 0.36 deleterious_low_confidence(0) probably_damaging(0.941) TCGA-56-8308-01 14 59112890 59112890 G T DACT1 Missense_Mutation p.G517C 0.18 deleterious(0.01) possibly_damaging(0.605) TCGA-56-8308-01 14 73420881 73420881 G T DCAF4 Missense_Mutation p.R273L 0.16 tolerated(0.1) benign(0.006) TCGA-56-8308-01 14 88707145 88707145 T C KCNK10 Missense_Mutation p.N141S 0.25 tolerated(0.82) benign(0.054) TCGA-56-8308-01 14 90745417 90745417 G A NRDE2 Missense_Mutation p.P1120S 0.16 deleterious(0) probably_damaging(0.998) TCGA-56-8308-01 14 94467643 94467643 G A LINC00521 RNA 0.36 TCGA-56-8308-01 14 99641731 99641731 G A BCL11B Missense_Mutation p.A481V 0.47 deleterious(0.01) possibly_damaging(0.573) TCGA-56-8308-01 15 101110067 101110067 A C LINS Silent p.S550S 0.32 TCGA-56-8308-01 15 102358791 102358791 C A OR4F15 Silent p.T134T 0.20 TCGA-56-8308-01 15 24922122 24922122 G C NPAP1 Missense_Mutation p.E370Q 0.40 tolerated(0.07) benign(0.124) TCGA-56-8308-01 15 28900446 28900446 G A HERC2P9 RNA 0.27 TCGA-56-8308-01 15 32449921 32449921 G T CHRNA7 Missense_Mutation p.Q210H 0.15 deleterious(0.02) benign(0.296) TCGA-56-8308-01 15 32449922 32449922 A T CHRNA7 Missense_Mutation p.M211L 0.15 tolerated(0.58) benign(0.006) TCGA-56-8308-01 15 33876625 33876625 T C RYR3 Missense_Mutation p.C535R 0.18 benign(0.216) TCGA-56-8308-01 15 40627456 40627456 G A C15orf52 Missense_Mutation p.P503L 0.16 tolerated_low_confidence(0.15) benign(0.06) TCGA-56-8308-01 15 40751103 40751103 G T BAHD1 Missense_Mutation p.R147L 0.38 deleterious(0) probably_damaging(0.985) TCGA-56-8308-01 15 41136955 41136955 C G SPINT1 Missense_Mutation p.S68W 0.24 deleterious(0) probably_damaging(1) TCGA-56-8308-01 15 43585653 43585653 C G TGM7 Missense_Mutation p.E63Q 0.29 deleterious(0.03) probably_damaging(0.932) TCGA-56-8308-01 15 43783873 43783873 G T TP53BP1 Missense_Mutation p.T122K 0.26 tolerated(1) benign(0.011) TCGA-56-8308-01 15 44092799 44092799 G A HYPK Translation_Start_Site p.M1? 0.45 tolerated_low_confidence(0.09) benign(0.004) TCGA-56-8308-01 15 48063082 48063082 T G SEMA6D Silent p.P774P 0.26 TCGA-56-8308-01 15 49059610 49059610 C A CEP152 Missense_Mutation p.R690L 0.25 tolerated(0.16) probably_damaging(0.999) TCGA-56-8308-01 15 52567847 52567847 T C MYO5C Missense_Mutation p.Y173C 0.28 deleterious(0.02) probably_damaging(1) TCGA-56-8308-01 15 55652945 55652945 C T CCPG1 Silent p.G342G 0.08 TCGA-56-8308-01 15 58357796 58357796 G T ALDH1A2 Missense_Mutation p.A18D 0.30 tolerated_low_confidence(0.07) probably_damaging(0.994) TCGA-56-8308-01 15 58357797 58357797 C T ALDH1A2 Missense_Mutation p.A18T 0.30 tolerated_low_confidence(0.13) probably_damaging(0.988) TCGA-56-8308-01 15 60734713 60734713 T C NARG2 Missense_Mutation p.E776G 0.29 deleterious(0) probably_damaging(1) TCGA-56-8308-01 15 73889694 73889694 C A NPTN Silent p.S36S 0.15 TCGA-56-8308-01 15 78910957 78910957 A T CHRNA3 Splice_Site p.X89_splice 0.29 TCGA-56-8308-01 15 80414154 80414154 G T ZFAND6 Missense_Mutation p.M85I 0.22 tolerated(0.21) benign(0.003) TCGA-56-8308-01 15 85383194 85383194 C A ALPK3 Missense_Mutation p.S430R 0.48 deleterious(0) benign(0.38) TCGA-56-8308-01 15 91479686 91479686 A G UNC45A Missense_Mutation p.E141G 0.23 tolerated(0.08) benign(0.013) TCGA-56-8308-01 16 1291236 1291236 G A TPSAB1 Silent p.L48L 0.19 TCGA-56-8308-01 16 27460441 27460441 T A IL21R Missense_Mutation p.L485Q 0.31 deleterious(0) probably_damaging(0.993) TCGA-56-8308-01 16 30122844 30122844 T C GDPD3 Splice_Site p.X192_splice 0.42 TCGA-56-8308-01 16 31382697 31382697 A G ITGAX Missense_Mutation p.I628M 0.11 tolerated(0.16) benign(0.302) TCGA-56-8308-01 16 33647291 33647291 G A RP11-812E19.9 Silent p.N103N 0.25 TCGA-56-8308-01 16 48304101 48304101 G T LONP2 Missense_Mutation p.R386I 0.53 deleterious(0) probably_damaging(0.991) TCGA-56-8308-01 16 51175621 51175621 G A SALL1 Missense_Mutation p.A171V 0.11 tolerated(0.22) probably_damaging(0.997) TCGA-56-8308-01 16 57608945 57608945 C G GPR114 Missense_Mutation p.S476C 0.19 deleterious(0) probably_damaging(0.997) TCGA-56-8308-01 16 67304909 67304909 C A SLC9A5 Silent p.L829L 0.59 TCGA-56-8308-01 16 89871737 89871737 C A FANCA Missense_Mutation p.Q220H 0.55 deleterious(0.02) benign(0.216) TCGA-56-8308-01 17 11784725 11784725 C G DNAH9 Missense_Mutation p.L3601V 0.14 benign(0.178) TCGA-56-8308-01 17 17131380 17131380 C G FLCN Silent p.V24V 0.35 TCGA-56-8308-01 17 19316038 19316038 G T RNF112 Missense_Mutation p.R108L 0.24 deleterious(0.01) probably_damaging(0.985) TCGA-56-8308-01 17 1961720 1961720 G A HIC1 Missense_Mutation p.G598D 0.10 deleterious(0) probably_damaging(0.999) TCGA-56-8308-01 17 19651692 19651692 C A ALDH3A1 5'Flank 0.26 TCGA-56-8308-01 17 28407137 28407137 C G EFCAB5 Silent p.L1025L 0.28 TCGA-56-8308-01 17 30821808 30821808 G A MYO1D Missense_Mutation p.S997L 0.36 tolerated(0.05) benign(0.156) TCGA-56-8308-01 17 38976885 38976885 C T KRT10 Missense_Mutation p.E249K 0.30 deleterious(0) probably_damaging(0.964) TCGA-56-8308-01 17 39777857 39777857 C G KRT17 Missense_Mutation p.W274C 0.12 deleterious(0) probably_damaging(0.98) TCGA-56-8308-01 17 46669721 46669721 G T HOXB5 Silent p.T220T 0.24 TCGA-56-8308-01 17 47886514 47886514 G C KAT7 Missense_Mutation p.E233Q 0.10 tolerated(0.1) benign(0.021) TCGA-56-8308-01 17 61886238 61886238 A G DDX42 Missense_Mutation p.Y361C 0.38 deleterious(0) probably_damaging(0.998) TCGA-56-8308-01 17 64171246 64171246 G T CEP112 Missense_Mutation p.T129K 0.30 tolerated(0.47) benign(0.156) TCGA-56-8308-01 17 65722740 65722740 G T NOL11 Nonsense_Mutation p.G277* 0.27 TCGA-56-8308-01 17 66416668 66416668 C T ARSG 3'UTR 0.09 TCGA-56-8308-01 17 66981084 66981084 C G ABCA9 Missense_Mutation p.V1441L 0.23 deleterious(0.03) benign(0.327) TCGA-56-8308-01 17 67197788 67197788 G A ABCA10 Missense_Mutation p.S343F 0.11 deleterious(0) possibly_damaging(0.888) TCGA-56-8308-01 17 7404164 7404164 C G POLR2A Silent p.T626T 0.37 TCGA-56-8308-01 17 7578448 7578448 G T TP53 Missense_Mutation p.A161D 0.29 deleterious(0) probably_damaging(1) TCGA-56-8308-01 17 78261637 78261637 G A RNF213 Silent p.K95K 0.16 TCGA-56-8308-01 17 7983170 7983170 G T ALOX12B Silent p.R282R 0.65 TCGA-56-8308-01 17 8215627 8215627 C T ARHGEF15 Silent p.S90S 0.44 TCGA-56-8308-01 18 59763131 59763131 C A PIGN Missense_Mutation p.L710F 0.15 deleterious(0) probably_damaging(0.999) TCGA-56-8308-01 18 65180420 65180420 T C DSEL Missense_Mutation p.T486A 0.36 deleterious(0.02) probably_damaging(0.974) TCGA-56-8308-01 18 66513616 66513616 G A CCDC102B Silent p.K298K 0.23 TCGA-56-8308-01 18 6999638 6999638 C T LAMA1 Splice_Site p.X1490_splice 0.40 TCGA-56-8308-01 18 76755256 76755256 G T SALL3 Missense_Mutation p.G1089W 0.60 deleterious(0) probably_damaging(0.94) TCGA-56-8308-01 18 76756920 76756920 C T SALL3 Silent p.N1167N 0.39 TCGA-56-8308-01 18 76967007 76967007 C A ATP9B Missense_Mutation p.A342E 0.26 deleterious(0) probably_damaging(0.997) TCGA-56-8308-01 19 10084619 10084619 A T COL5A3 Silent p.G1178G 0.25 TCGA-56-8308-01 19 10439403 10439403 C A RAVER1 Missense_Mutation p.C241F 0.47 deleterious(0) probably_damaging(0.995) TCGA-56-8308-01 19 12541171 12541171 T A ZNF443 Silent p.G605G 0.27 TCGA-56-8308-01 19 14162481 14162481 G T IL27RA Missense_Mutation p.G531W 0.26 deleterious(0.02) probably_damaging(0.982) TCGA-56-8308-01 19 15582855 15582855 G T PGLYRP2 Missense_Mutation p.P397T 0.37 deleterious(0) probably_damaging(0.944) TCGA-56-8308-01 19 20828123 20828123 G C ZNF626 Intron 0.30 TCGA-56-8308-01 19 21132026 21132026 G T ZNF85 Missense_Mutation p.G236C 0.36 deleterious(0) probably_damaging(0.999) TCGA-56-8308-01 19 22940477 22940477 G A ZNF99 Missense_Mutation p.S745F 0.48 tolerated(0.63) benign(0.008) TCGA-56-8308-01 19 34833066 34833066 C T KIAA0355 Missense_Mutation p.P743S 0.19 tolerated_low_confidence(0.35) benign(0.004) TCGA-56-8308-01 19 34912476 34912476 A T PDCD2L Missense_Mutation p.T284S 0.51 tolerated(1) benign(0.01) TCGA-56-8308-01 19 36017622 36017622 C A SBSN Missense_Mutation p.G521V 0.53 deleterious(0) probably_damaging(0.988) TCGA-56-8308-01 19 40366468 40366468 A G FCGBP Missense_Mutation p.L4589P 0.60 probably_damaging(0.999) TCGA-56-8308-01 19 41518287 41518287 A T CYP2B6 Missense_Mutation p.E350V 0.52 deleterious(0) possibly_damaging(0.883) TCGA-56-8308-01 19 4292572 4292572 C A TMIGD2 3'UTR 0.32 TCGA-56-8308-01 19 4292850 4292850 G C TMIGD2 Missense_Mutation p.P199A 0.09 tolerated(0.06) possibly_damaging(0.811) TCGA-56-8308-01 19 43420580 43420580 G T PSG6 Missense_Mutation p.P42T 0.19 deleterious(0) probably_damaging(1) TCGA-56-8308-01 19 43579695 43579695 G C PSG2 Missense_Mutation p.P174A 0.23 deleterious(0.01) benign(0.356) TCGA-56-8308-01 19 45451962 45451962 C G APOC2 Silent p.V20V 0.07 TCGA-56-8308-01 19 46215221 46215221 G A FBXO46 Silent p.G511G 0.09 TCGA-56-8308-01 19 47112395 47112395 G C CALM3 Missense_Mutation p.M145I 0.31 tolerated_low_confidence(0.14) benign(0.037) TCGA-56-8308-01 19 52002969 52002969 G T SIGLEC12 Silent p.A270A 0.34 TCGA-56-8308-01 19 54139900 54139900 T A DPRX Missense_Mutation p.H78Q 0.34 tolerated(0.4) benign(0.001) TCGA-56-8308-01 19 55143560 55143560 C A LILRB1 Missense_Mutation p.S178Y 0.38 tolerated(1) benign(0.004) TCGA-56-8308-01 19 55687461 55687461 G A SYT5 Missense_Mutation p.A95V 0.42 tolerated(0.25) benign(0.001) TCGA-56-8308-01 19 57037312 57037312 C A ZNF471 Missense_Mutation p.P626T 0.42 deleterious(0) probably_damaging(0.989) TCGA-56-8308-01 19 58571496 58571496 C A ZNF135 Intron 0.75 TCGA-56-8308-01 19 6981166 6981166 G T EMR4P RNA 0.10 TCGA-56-8308-01 1 116380684 116380684 G A NHLH2 Silent p.L104L 0.45 TCGA-56-8308-01 1 152326922 152326922 C A FLG2 Missense_Mutation p.G1114C 0.49 unknown(0) TCGA-56-8308-01 1 155936257 155936257 G A ARHGEF2 Missense_Mutation p.A97V 0.20 deleterious(0.02) probably_damaging(0.997) TCGA-56-8308-01 1 157648480 157648480 G T FCRL3 3'UTR 0.05 TCGA-56-8308-01 1 157737287 157737287 C G FCRL2 Missense_Mutation p.R299P 0.09 tolerated(0.09) benign(0.08) TCGA-56-8308-01 1 158324331 158324331 C A CD1E Missense_Mutation p.R75S 0.50 tolerated(0.13) benign(0.195) TCGA-56-8308-01 1 158607943 158607943 T C SPTA1 Missense_Mutation p.N1690S 0.54 tolerated(1) benign(0.003) TCGA-56-8308-01 1 158615348 158615348 C T SPTA1 Missense_Mutation p.M1311I 0.10 tolerated(0.09) benign(0.01) TCGA-56-8308-01 1 158631100 158631100 C T SPTA1 Missense_Mutation p.R855K 0.06 tolerated(0.92) benign(0.039) TCGA-56-8308-01 1 161600989 161600989 C A FCGR3B Missense_Mutation p.G2C 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-56-8308-01 1 175049373 175049373 C T TNN Nonsense_Mutation p.Q287* 0.25 TCGA-56-8308-01 1 175334188 175334188 C A TNR Missense_Mutation p.G849C 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-56-8308-01 1 178489556 178489556 A T TEX35 Missense_Mutation p.Q109L 0.12 deleterious(0) possibly_damaging(0.888) TCGA-56-8308-01 1 179322847 179322847 A T SOAT1 3'UTR 0.12 TCGA-56-8308-01 1 184787847 184787847 A T FAM129A Silent p.R366R 0.31 TCGA-56-8308-01 1 185939483 185939483 G C HMCN1 Missense_Mutation p.R743S 0.34 benign(0.171) TCGA-56-8308-01 1 19062210 19062210 G A PAX7 Missense_Mutation p.D414N 0.23 deleterious_low_confidence(0) benign(0.141) TCGA-56-8308-01 1 196398806 196398806 A C KCNT2 Missense_Mutation p.F240L 0.32 tolerated(0.09) possibly_damaging(0.904) TCGA-56-8308-01 1 207782850 207782850 A G CR1 Missense_Mutation p.T2038A 0.33 tolerated(0.88) benign(0.003) TCGA-56-8308-01 1 212988450 212988450 G C TATDN3 Missense_Mutation p.Q266H 0.41 tolerated(0.21) benign(0.003) TCGA-56-8308-01 1 215847976 215847976 T C USH2A Missense_Mutation p.N4426S 0.45 benign(0.014) TCGA-56-8308-01 1 215956261 215956261 G A USH2A Silent p.P3468P 0.09 TCGA-56-8308-01 1 215990372 215990372 G T USH2A Silent p.I3179I 0.29 TCGA-56-8308-01 1 216850556 216850556 G C ESRRG Missense_Mutation p.P117A 0.31 tolerated(0.14) benign(0.001) TCGA-56-8308-01 1 220978427 220978427 G T MARC1 Nonsense_Mutation p.E263* 0.19 TCGA-56-8308-01 1 223178673 223178673 G A DISP1 Missense_Mutation p.V1312M 0.22 tolerated_low_confidence(0.13) benign(0.02) TCGA-56-8308-01 1 227288890 227288890 T C CDC42BPA Silent p.Q684Q 0.22 TCGA-56-8308-01 1 236734883 236734883 C G HEATR1 Missense_Mutation p.G1271R 0.15 deleterious(0.02) benign(0.439) TCGA-56-8308-01 1 240071133 240071133 T A CHRM3 Missense_Mutation p.Y128N 0.12 deleterious(0) probably_damaging(0.995) TCGA-56-8308-01 1 240969617 240969617 C A RGS7 Silent p.L364L 0.11 TCGA-56-8308-01 1 242253162 242253162 G C PLD5 Missense_Mutation p.N535K 0.30 tolerated_low_confidence(0.06) benign(0) TCGA-56-8308-01 1 242511408 242511408 C T PLD5 Missense_Mutation p.R109Q 0.08 deleterious(0.04) probably_damaging(0.918) TCGA-56-8308-01 1 248031361 248031361 C T TRIM58 Silent p.F289F 0.33 TCGA-56-8308-01 1 248551140 248551140 T C OR2T6 Silent p.I77I 0.14 TCGA-56-8308-01 1 248636657 248636657 C T OR2T3 Silent p.C2C 0.28 TCGA-56-8308-01 1 248636658 248636658 T C OR2T3 Missense_Mutation p.S3P 0.29 tolerated(0.06) benign(0.007) TCGA-56-8308-01 1 38226940 38226940 C G EPHA10 Intron 0.12 TCGA-56-8308-01 1 44584641 44584641 C T KLF17 Missense_Mutation p.A21V 0.19 tolerated(0.28) benign(0.001) TCGA-56-8308-01 1 46977927 46977927 T C DMBX1 Missense_Mutation p.Y299H 0.39 deleterious_low_confidence(0) possibly_damaging(0.888) TCGA-56-8308-01 1 64669658 64669658 C T UBE2U 5'UTR 0.22 TCGA-56-8308-01 1 70504389 70504389 T A LRRC7 Missense_Mutation p.I923N 0.61 deleterious(0) benign(0.419) TCGA-56-8308-01 1 76313961 76313961 G T MSH4 Silent p.T410T 0.32 TCGA-56-8308-01 1 85550302 85550302 C G WDR63 Missense_Mutation p.P155R 0.41 deleterious(0) possibly_damaging(0.688) TCGA-56-8308-01 1 87380788 87380788 G T HS2ST1 Silent p.A23A 0.47 TCGA-56-8308-01 20 13936750 13936750 C A SEL1L2 Missense_Mutation p.R29I 0.15 tolerated(0.1) benign(0) TCGA-56-8308-01 20 20348984 20348984 G T INSM1 Missense_Mutation p.D25Y 0.43 deleterious(0.01) probably_damaging(0.953) TCGA-56-8308-01 20 2380226 2380226 G T TGM6 Missense_Mutation p.R231L 0.28 deleterious(0.04) benign(0.073) TCGA-56-8308-01 20 35128974 35128974 G A DLGAP4 Silent p.Q821Q 0.14 TCGA-56-8308-01 20 42788298 42788298 C G JPH2 Missense_Mutation p.A377P 0.32 deleterious(0) probably_damaging(0.982) TCGA-56-8308-01 20 47247272 47247272 T C PREX1 Missense_Mutation p.I1529M 0.15 deleterious(0) probably_damaging(0.91) TCGA-56-8308-01 20 47989541 47989541 G T KCNB1 Missense_Mutation p.S852R 0.23 deleterious_low_confidence(0.02) benign(0.168) TCGA-56-8308-01 20 57244410 57244410 C G STX16 Missense_Mutation p.Q153E 0.13 deleterious(0.02) benign(0.043) TCGA-56-8308-01 20 62514133 62514133 A T TPD52L2 Missense_Mutation p.T146S 0.13 tolerated(0.44) benign(0.093) TCGA-56-8308-01 20 62599264 62599264 C G ZNF512B Missense_Mutation p.G14R 0.20 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-56-8308-01 21 22790828 22790828 T A NCAM2 Nonsense_Mutation p.Y473* 0.31 TCGA-56-8308-01 21 37581130 37581130 G T DOPEY2 Silent p.V203V 0.05 TCGA-56-8308-01 21 39493258 39493258 G A DSCR4 Missense_Mutation p.P31L 0.32 possibly_damaging(0.859) TCGA-56-8308-01 21 43906545 43906545 C T RSPH1 Missense_Mutation p.G101S 0.17 deleterious(0) probably_damaging(1) TCGA-56-8308-01 21 45978384 45978384 G C KRTAP10-3 Missense_Mutation p.T72S 0.23 tolerated(0.2) unknown(0) TCGA-56-8308-01 21 47705003 47705003 A G MCM3AP Silent p.H66H 0.10 TCGA-56-8308-01 21 47836259 47836259 A C PCNT Missense_Mutation p.K2143Q 0.25 benign(0.035) TCGA-56-8308-01 22 16279265 16279265 G T POTEH Missense_Mutation p.Q320K 0.06 tolerated(0.43) possibly_damaging(0.678) TCGA-56-8308-01 22 22868639 22868639 A G ZNF280A Missense_Mutation p.M439T 0.19 deleterious(0) possibly_damaging(0.552) TCGA-56-8308-01 22 23956329 23956331 TCA - C22orf43 In_Frame_Del p.D205del 0.10 TCGA-56-8308-01 22 38363651 38363651 A G POLR2F Missense_Mutation p.I105V 0.26 tolerated(0.39) benign(0.163) TCGA-56-8308-01 22 38823108 38823108 C T KCNJ4 Missense_Mutation p.G344S 0.11 tolerated(0.91) benign(0.03) TCGA-56-8308-01 22 45312279 45312279 C A PHF21B Missense_Mutation p.A149S 0.18 tolerated_low_confidence(0.05) probably_damaging(0.996) TCGA-56-8308-01 22 45689100 45689100 C T UPK3A Missense_Mutation p.R204W 0.05 deleterious(0) probably_damaging(0.967) TCGA-56-8308-01 2 10105478 10105478 T G GRHL1 Missense_Mutation p.S360A 0.15 deleterious(0.03) benign(0.307) TCGA-56-8308-01 2 101097605 101097605 G T NMS Missense_Mutation p.W130C 0.19 tolerated(0.18) possibly_damaging(0.67) TCGA-56-8308-01 2 101097606 101097606 G T NMS Nonsense_Mutation p.G131* 0.19 TCGA-56-8308-01 2 108999917 108999917 C T SULT1C4 Missense_Mutation p.A189V 0.19 tolerated(0.16) benign(0.126) TCGA-56-8308-01 2 113300055 113300055 G T POLR1B 5'UTR 0.30 TCGA-56-8308-01 2 1161276 1161276 G T SNTG2 Missense_Mutation p.V152F 0.21 deleterious(0.05) probably_damaging(0.999) TCGA-56-8308-01 2 116598378 116598378 T A DPP10 Silent p.A749A 0.37 TCGA-56-8308-01 2 125281981 125281981 G A CNTNAP5 Missense_Mutation p.D476N 0.19 tolerated(0.38) possibly_damaging(0.827) TCGA-56-8308-01 2 132277182 132277182 C T AC093838.4 RNA 0.22 TCGA-56-8308-01 2 136575334 136575334 C A LCT Silent p.V428V 0.30 TCGA-56-8308-01 2 137928507 137928507 C T THSD7B Silent p.R574R 0.28 TCGA-56-8308-01 2 143715266 143715266 G T KYNU Silent p.R188R 0.27 TCGA-56-8308-01 2 145187522 145187522 C G ZEB2 Missense_Mutation p.D49H 0.27 deleterious(0) possibly_damaging(0.62) TCGA-56-8308-01 2 155555861 155555861 G A KCNJ3 Missense_Mutation p.E192K 0.31 deleterious(0) probably_damaging(0.998) TCGA-56-8308-01 2 164467593 164467593 G T FIGN Missense_Mutation p.A250D 0.31 tolerated(0.29) benign(0.086) TCGA-56-8308-01 2 168107197 168107197 C A XIRP2 Missense_Mutation p.H3099N 0.37 possibly_damaging(0.466) TCGA-56-8308-01 2 174130945 174130945 T C MLTK Missense_Mutation p.Y624H 0.09 tolerated_low_confidence(0.16) possibly_damaging(0.794) TCGA-56-8308-01 2 179395345 179395345 G - TTN Frame_Shift_Del p.Q35333Sfs*72 0.16 TCGA-56-8308-01 2 179414056 179414056 C T TTN Nonsense_Mutation p.W30766* 0.20 TCGA-56-8308-01 2 179424236 179424236 C G TTN Missense_Mutation p.A28875P 0.36 TCGA-56-8308-01 2 179435666 179435666 G T TTN Missense_Mutation p.H25065N 0.29 TCGA-56-8308-01 2 179441868 179441868 A G TTN Missense_Mutation p.L23065S 0.34 TCGA-56-8308-01 2 179477169 179477169 G T TTN Silent p.R16695R 0.46 TCGA-56-8308-01 2 179478906 179478906 C A TTN Missense_Mutation p.K16406N 0.30 TCGA-56-8308-01 2 179592098 179592098 T C TTN Missense_Mutation p.E6665G 0.25 TCGA-56-8308-01 2 181925479 181925479 G A UBE2E3 Missense_Mutation p.A156T 0.30 deleterious(0.04) probably_damaging(0.998) TCGA-56-8308-01 2 196723425 196723425 G A DNAH7 Missense_Mutation p.P2614S 0.04 deleterious(0) probably_damaging(1) TCGA-56-8308-01 2 220312700 220312700 G A SPEG Missense_Mutation p.V274I 0.10 benign(0.002) TCGA-56-8308-01 2 227954663 227954663 A G COL4A4 Silent p.C460C 0.16 TCGA-56-8308-01 2 228552117 228552117 A G SLC19A3 Missense_Mutation p.L496P 0.18 deleterious(0) possibly_damaging(0.754) TCGA-56-8308-01 2 234198555 234198555 A G ATG16L1 Missense_Mutation p.N420S 0.50 tolerated(0.66) probably_damaging(0.996) TCGA-56-8308-01 2 237272522 237272522 G T IQCA1 Silent p.T590T 0.39 TCGA-56-8308-01 2 238275845 238275845 A G COL6A3 Missense_Mutation p.V1662A 0.42 benign(0.268) TCGA-56-8308-01 2 241405639 241405639 C - GPC1 Frame_Shift_Del p.P538Rfs*15 0.18 TCGA-56-8308-01 2 44073322 44073322 T A ABCG8 Missense_Mutation p.F65Y 0.41 tolerated(1) benign(0.005) TCGA-56-8308-01 2 48906561 48906561 A G STON1-GTF2A1L Missense_Mutation p.I1177V 0.40 tolerated(0.54) benign(0.008) TCGA-56-8308-01 2 48915590 48915590 G T LHCGR Missense_Mutation p.A449E 0.16 deleterious(0) probably_damaging(0.928) TCGA-56-8308-01 2 6991550 6991550 C A CMPK2 Intron 0.33 TCGA-56-8308-01 2 74327752 74327752 C G TET3 Nonsense_Mutation p.Y1144* 0.33 TCGA-56-8308-01 2 85549780 85549780 C A TGOLN2 3'UTR 0.33 TCGA-56-8308-01 2 90193209 90193209 C A IGKV1D-13 Silent p.R46R 0.20 TCGA-56-8308-01 2 90248944 90248944 C T IGKV1D-43 Missense_Mutation p.R9C 0.28 deleterious(0) benign(0.133) TCGA-56-8308-01 2 97529845 97529845 G C SEMA4C Missense_Mutation p.S383C 0.38 deleterious(0) probably_damaging(0.985) TCGA-56-8308-01 3 109026936 109026936 C T DPPA2 Missense_Mutation p.A201T 0.19 tolerated(0.45) benign(0.001) TCGA-56-8308-01 3 119501565 119501565 G T NR1I2 5'UTR 0.10 TCGA-56-8308-01 3 129324757 129324757 G A PLXND1 Silent p.S242S 0.19 TCGA-56-8308-01 3 130743391 130743391 G T ASTE1 Missense_Mutation p.H254N 0.26 tolerated(0.57) possibly_damaging(0.499) TCGA-56-8308-01 3 138724878 138724878 A T PRR23A Missense_Mutation p.L78Q 0.15 deleterious(0) probably_damaging(1) TCGA-56-8308-01 3 14523190 14523190 C G SLC6A6 Missense_Mutation p.I521M 0.21 deleterious(0.03) possibly_damaging(0.629) TCGA-56-8308-01 3 151105648 151105648 G T MED12L Missense_Mutation p.E1678D 0.14 deleterious(0) probably_damaging(0.99) TCGA-56-8308-01 3 15778742 15778742 T A ANKRD28 Splice_Site p.X88_splice 0.29 TCGA-56-8308-01 3 169646364 169646364 C G SAMD7 Missense_Mutation p.Q347E 0.05 deleterious(0) possibly_damaging(0.665) TCGA-56-8308-01 3 184008967 184008967 G C ECE2 Missense_Mutation p.Q776H 0.51 tolerated(0.27) probably_damaging(0.999) TCGA-56-8308-01 3 191093090 191093090 C T CCDC50 Nonsense_Mutation p.Q230* 0.14 TCGA-56-8308-01 3 193082014 193082014 G A ATP13A5 Missense_Mutation p.S40F 0.27 tolerated(0.5) benign(0.026) TCGA-56-8308-01 3 19322707 19322707 C A KCNH8 Missense_Mutation p.L110I 0.19 deleterious(0.01) probably_damaging(0.992) TCGA-56-8308-01 3 38159034 38159034 G A DLEC1 Missense_Mutation p.D1473N 0.14 tolerated(0.05) possibly_damaging(0.461) TCGA-56-8308-01 3 38597251 38597251 A T SCN5A Missense_Mutation p.L1480I 0.20 tolerated(0.61) benign(0.009) TCGA-56-8308-01 3 38768195 38768195 C A SCN10A Missense_Mutation p.V997L 0.19 deleterious(0.01) probably_damaging(0.99) TCGA-56-8308-01 3 38798321 38798321 C A SCN10A Silent p.V378V 0.17 TCGA-56-8308-01 3 38913705 38913705 C G SCN11A Silent p.L1158L 0.17 TCGA-56-8308-01 3 39171773 39171773 A G TTC21A Missense_Mutation p.Y755C 0.09 deleterious(0.03) benign(0.111) TCGA-56-8308-01 3 73433110 73433111 - T PDZRN3 Frame_Shift_Ins p.H870Afs*142 0.17 TCGA-56-8308-01 3 74535645 74535645 C A CNTN3 Missense_Mutation p.G107V 0.08 deleterious(0) probably_damaging(1) TCGA-56-8308-01 3 74535646 74535646 C A CNTN3 Nonsense_Mutation p.G107* 0.08 TCGA-56-8308-01 3 9506125 9506125 A - SETD5 Frame_Shift_Del p.K832Rfs*8 0.18 TCGA-56-8308-01 4 104065502 104065502 C T CENPE Missense_Mutation p.E1711K 0.45 possibly_damaging(0.893) TCGA-56-8308-01 4 114276569 114276569 C T ANK2 Silent p.T2265T 0.25 TCGA-56-8308-01 4 115792072 115792072 C T NDST4 Missense_Mutation p.G524E 0.07 deleterious(0) probably_damaging(0.998) TCGA-56-8308-01 4 121958094 121958094 C A NDNF Missense_Mutation p.E344D 0.34 tolerated(0.18) benign(0.006) TCGA-56-8308-01 4 134072091 134072091 G T PCDH10 Missense_Mutation p.G266C 0.43 deleterious(0) probably_damaging(0.992) TCGA-56-8308-01 4 138442327 138442327 G T PCDH18 Silent p.A1088A 0.53 TCGA-56-8308-01 4 151408970 151408970 G - LRBA Frame_Shift_Del p.F2167Sfs*7 0.22 TCGA-56-8308-01 4 164272221 164272221 G A NPY5R Missense_Mutation p.G266R 0.39 tolerated(0.52) benign(0.007) TCGA-56-8308-01 4 184182325 184182325 C T WWC2 Missense_Mutation p.P517S 0.40 tolerated(0.55) benign(0.171) TCGA-56-8308-01 4 186544848 186544848 C T SORBS2 Missense_Mutation p.A675T 0.44 tolerated(1) benign(0.003) TCGA-56-8308-01 4 2275857 2275857 C A ZFYVE28 Missense_Mutation p.R713I 0.40 deleterious(0) probably_damaging(0.999) TCGA-56-8308-01 4 46264145 46264145 C G GABRA2 Missense_Mutation p.G286A 0.07 deleterious(0.01) probably_damaging(0.992) TCGA-56-8308-01 4 47877231 47877231 C A NFXL1 Missense_Mutation p.R720L 0.46 deleterious(0) benign(0.027) TCGA-56-8308-01 4 55955625 55955625 G T KDR Missense_Mutation p.P1107H 0.58 deleterious(0) probably_damaging(1) TCGA-56-8308-01 4 62903452 62903452 C A LPHN3 Silent p.R1131R 0.34 TCGA-56-8308-01 4 76522186 76522186 G A CDKL2 Missense_Mutation p.L419F 0.42 tolerated(0.37) benign(0.005) TCGA-56-8308-01 5 140181504 140181504 C A PCDHA3 Missense_Mutation p.A241E 0.49 tolerated_low_confidence(1) benign(0.003) TCGA-56-8308-01 5 141243486 141243486 C A PCDH1 Missense_Mutation p.G804C 0.40 deleterious(0.04) probably_damaging(0.944) TCGA-56-8308-01 5 148590323 148590324 - C ABLIM3 Frame_Shift_Ins p.Q205Pfs*5 0.29 TCGA-56-8308-01 5 176524338 176524338 G T FGFR4 Missense_Mutation p.R733S 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-56-8308-01 5 179192714 179192714 A G MAML1 Missense_Mutation p.I235V 0.44 tolerated(0.78) benign(0.002) TCGA-56-8308-01 5 179529123 179529123 C G RASGEF1C Missense_Mutation p.E442Q 0.41 deleterious(0) possibly_damaging(0.556) TCGA-56-8308-01 5 23527387 23527387 C T PRDM9 Silent p.S730S 0.52 TCGA-56-8308-01 5 32088185 32088185 C A PDZD2 Missense_Mutation p.T1544K 0.48 tolerated(0.07) possibly_damaging(0.716) TCGA-56-8308-01 5 41158810 41158810 G A C6 Missense_Mutation p.P645L 0.50 tolerated(0.95) benign(0.004) TCGA-56-8308-01 5 98229248 98229248 A G CHD1 Silent p.N621N 0.16 TCGA-56-8308-01 6 116988000 116988000 T C ZUFSP Missense_Mutation p.Y119C 0.44 tolerated(0.18) benign(0.012) TCGA-56-8308-01 6 127771190 127771190 G T KIAA0408 Missense_Mutation p.P148H 0.28 tolerated(0.55) probably_damaging(0.959) TCGA-56-8308-01 6 128134028 128134028 C T THEMIS Silent p.K586K 0.28 TCGA-56-8308-01 6 132022433 132022433 T G OR2A4 Missense_Mutation p.T37P 0.19 deleterious(0) possibly_damaging(0.655) TCGA-56-8308-01 6 132194157 132194157 C T ENPP1 Missense_Mutation p.T511I 0.24 deleterious(0.03) benign(0.013) TCGA-56-8308-01 6 132966483 132966483 C T TAAR1 Silent p.Q220Q 0.15 TCGA-56-8308-01 6 13977390 13977390 G T RNF182 Missense_Mutation p.A14S 0.48 tolerated(0.81) benign(0) TCGA-56-8308-01 6 143085987 143085987 C T HIVEP2 Missense_Mutation p.D1823N 0.17 deleterious(0.01) probably_damaging(1) TCGA-56-8308-01 6 152702203 152702203 A G SYNE1 Silent p.L2983L 0.14 TCGA-56-8308-01 6 152734585 152734585 T C SYNE1 Silent p.Q2044Q 0.29 TCGA-56-8308-01 6 160517509 160517509 T C IGF2R Missense_Mutation p.C2232R 0.19 deleterious(0) probably_damaging(0.997) TCGA-56-8308-01 6 163736055 163736055 G T PACRG 3'UTR 0.24 TCGA-56-8308-01 6 167570744 167570744 G A GPR31 Silent p.L192L 0.05 TCGA-56-8308-01 6 167708122 167708122 G A UNC93A Missense_Mutation p.G69R 0.22 deleterious(0.01) benign(0.222) TCGA-56-8308-01 6 27806771 27806771 C A HIST1H2BN Missense_Mutation p.A111E 0.44 deleterious_low_confidence(0) possibly_damaging(0.714) TCGA-56-8308-01 6 28547101 28547101 C A SCAND3 Missense_Mutation p.M172I 0.16 tolerated_low_confidence(0.31) benign(0) TCGA-56-8308-01 6 30955095 30955095 C A MUC21 Missense_Mutation p.S381R 0.43 deleterious(0) unknown(0) TCGA-56-8308-01 6 37336783 37336783 G T RNF8 Missense_Mutation p.R255M 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-56-8308-01 6 37336812 37336813 - A RNF8 Frame_Shift_Ins p.H267Tfs*2 0.31 TCGA-56-8308-01 6 42891034 42891034 G T PTCRA Missense_Mutation p.G110W 0.12 deleterious(0) probably_damaging(0.999) TCGA-56-8308-01 6 46658422 46658422 G T TDRD6 Missense_Mutation p.D853Y 0.38 deleterious(0) probably_damaging(1) TCGA-56-8308-01 6 57398211 57398211 G T PRIM2 Missense_Mutation p.G305V 0.13 deleterious(0) probably_damaging(0.998) TCGA-56-8308-01 6 69728322 69728322 G A BAI3 Missense_Mutation p.D680N 0.17 deleterious(0.02) benign(0.346) TCGA-56-8308-01 6 70064206 70064206 C A BAI3 Missense_Mutation p.H1181N 0.12 deleterious(0.01) benign(0.265) TCGA-56-8308-01 6 7229469 7229469 C T RREB1 Silent p.P379P 0.34 TCGA-56-8308-01 6 75890888 75890888 G C COL12A1 Missense_Mutation p.T644S 0.22 possibly_damaging(0.588) TCGA-56-8308-01 6 76744408 76744408 T A IMPG1 Missense_Mutation p.E133V 0.21 deleterious(0) probably_damaging(0.968) TCGA-56-8308-01 6 97613286 97613286 C T MMS22L Silent p.L1019L 0.15 TCGA-56-8308-01 6 97702467 97702467 T A MMS22L Missense_Mutation p.Y362F 0.20 tolerated(0.08) probably_damaging(0.987) TCGA-56-8308-01 7 100281679 100281679 G T GIGYF1 Missense_Mutation p.A611E 0.22 tolerated(0.92) unknown(0) TCGA-56-8308-01 7 100861499 100861499 G T ZNHIT1 Splice_Site p.X8_splice 0.08 TCGA-56-8308-01 7 106509275 106509275 G T PIK3CG Missense_Mutation p.L423F 0.09 deleterious(0) probably_damaging(0.995) TCGA-56-8308-01 7 107204327 107204327 G A COG5 Silent p.G36G 0.09 TCGA-56-8308-01 7 107602025 107602025 T A LAMB1 Missense_Mutation p.N652Y 0.18 tolerated(0.23) benign(0.379) TCGA-56-8308-01 7 116199161 116199161 C T CAV1 Silent p.F119F 0.12 TCGA-56-8308-01 7 124387038 124387038 G A GPR37 Silent p.C461C 0.11 TCGA-56-8308-01 7 131870085 131870085 C A PLXNA4 Missense_Mutation p.R1044L 0.36 tolerated(0.11) possibly_damaging(0.746) TCGA-56-8308-01 7 134261140 134261140 G C AKR1B15 Missense_Mutation p.K261N 0.22 tolerated(0.1) possibly_damaging(0.853) TCGA-56-8308-01 7 134870960 134870960 G C WDR91 Silent p.L729L 0.20 TCGA-56-8308-01 7 135368999 135368999 A T SLC13A4 Missense_Mutation p.L539Q 0.48 deleterious(0) probably_damaging(0.997) TCGA-56-8308-01 7 137801397 137801397 G A AKR1D1 Missense_Mutation p.D324N 0.08 deleterious(0) benign(0.402) TCGA-56-8308-01 7 13935520 13935520 G - ETV1 Frame_Shift_Del p.H469Tfs*47 0.24 TCGA-56-8308-01 7 140487372 140487372 C T BRAF Missense_Mutation p.D385N 0.14 tolerated(0.33) benign(0.005) TCGA-56-8308-01 7 141730202 141730202 G T MGAM Missense_Mutation p.R421M 0.11 tolerated(0.06) benign(0.194) TCGA-56-8308-01 7 142013031 142013031 C A TRBV4-1 5'UTR 0.10 TCGA-56-8308-01 7 142021338 142021338 C A TRBV5-1 Silent p.A106A 0.14 TCGA-56-8308-01 7 142162219 142162219 A T TRBV6-6 Missense_Mutation p.V19E 0.35 tolerated(0.06) possibly_damaging(0.481) TCGA-56-8308-01 7 142881123 142881123 C A TAS2R39 Silent p.I204I 0.15 TCGA-56-8308-01 7 143657791 143657791 C G OR2F1 Missense_Mutation p.S243C 0.42 deleterious(0) probably_damaging(0.994) TCGA-56-8308-01 7 21630911 21630911 C A DNAH11 Missense_Mutation p.Q795K 0.21 benign(0.021) TCGA-56-8308-01 7 21737803 21737803 C A DNAH11 Missense_Mutation p.T2058K 0.37 benign(0.142) TCGA-56-8308-01 7 32919260 32919260 C T KBTBD2 5'UTR 0.31 TCGA-56-8308-01 7 33057103 33057103 A C NT5C3A Missense_Mutation p.V219G 0.18 deleterious(0) probably_damaging(0.956) TCGA-56-8308-01 7 35678082 35678082 T C HERPUD2 Silent p.G165G 0.29 TCGA-56-8308-01 7 4308200 4308200 A T SDK1 3'UTR 0.67 TCGA-56-8308-01 7 47920353 47920353 C T PKD1L1 Missense_Mutation p.E1165K 0.38 tolerated(0.24) benign(0.317) TCGA-56-8308-01 7 50563089 50563089 G C DDC Silent p.P301P 0.28 TCGA-56-8308-01 7 5391450 5391450 C T TNRC18 Missense_Mutation p.D1824N 0.39 possibly_damaging(0.632) TCGA-56-8308-01 7 57529440 57529440 A T ZNF716 Nonsense_Mutation p.K425* 0.20 TCGA-56-8308-01 7 73609598 73609598 C T EIF4H Missense_Mutation p.A236V 0.29 deleterious(0) probably_damaging(0.996) TCGA-56-8308-01 7 80433440 80433440 C A SEMA3C Missense_Mutation p.M261I 0.43 deleterious(0) benign(0.253) TCGA-56-8308-01 7 83023628 83023628 C G SEMA3E Missense_Mutation p.E495D 0.31 tolerated(0.08) benign(0.09) TCGA-56-8308-01 7 83675673 83675673 T A SEMA3A Missense_Mutation p.R212W 0.17 deleterious(0) probably_damaging(1) TCGA-56-8308-01 7 87079361 87079361 T C ABCB4 Silent p.A252A 0.12 TCGA-56-8308-01 7 89976021 89976021 G T GTPBP10 5'UTR 0.54 TCGA-56-8308-01 7 94285383 94285383 C A SGCE Nonsense_Mutation p.G10* 0.09 TCGA-56-8308-01 7 94540782 94540782 G C PPP1R9A Missense_Mutation p.A453P 0.08 tolerated(1) benign(0.002) TCGA-56-8308-01 7 94898622 94898622 C - PPP1R9A Frame_Shift_Del p.P977Rfs*13 0.30 TCGA-56-8308-01 8 113563102 113563102 G T CSMD3 Missense_Mutation p.S1454R 0.30 tolerated(0.07) probably_damaging(0.987) TCGA-56-8308-01 8 113564867 113564867 C A CSMD3 Silent p.L1439L 0.36 TCGA-56-8308-01 8 124992976 124992976 T C FER1L6 Silent p.D445D 0.23 TCGA-56-8308-01 8 13259007 13259007 G C DLC1 Missense_Mutation p.T382R 0.35 deleterious_low_confidence(0) possibly_damaging(0.871) TCGA-56-8308-01 8 13357010 13357010 G T DLC1 Missense_Mutation p.L191M 0.18 tolerated_low_confidence(0.06) possibly_damaging(0.851) TCGA-56-8308-01 8 1497551 1497551 C A DLGAP2 Missense_Mutation p.T231K 0.27 tolerated(0.82) benign(0.22) TCGA-56-8308-01 8 17406220 17406220 G A SLC7A2 Nonsense_Mutation p.W229* 0.32 TCGA-56-8308-01 8 19805792 19805792 G C LPL Missense_Mutation p.V64L 0.37 tolerated(1) benign(0.021) TCGA-56-8308-01 8 2041840 2041840 C A MYOM2 Silent p.R683R 0.15 TCGA-56-8308-01 8 22995759 22995759 A G TNFRSF10D Silent p.A323A 0.21 TCGA-56-8308-01 8 2818718 2818718 C A CSMD1 Missense_Mutation p.C3216F 0.17 probably_damaging(0.999) TCGA-56-8308-01 8 2876047 2876047 C A CSMD1 Nonsense_Mutation p.E2661* 0.33 TCGA-56-8308-01 8 55533958 55533958 C T RP1 Silent p.V144V 0.15 TCGA-56-8308-01 9 101470828 101470828 G T GABBR2 Silent p.L64L 0.21 TCGA-56-8308-01 9 114304794 114304794 G A ZNF483 Missense_Mutation p.D527N 0.23 tolerated(0.1) possibly_damaging(0.708) TCGA-56-8308-01 9 115422127 115422127 C A KIAA1958 Silent p.P643P 0.24 TCGA-56-8308-01 9 118949883 118949883 A G PAPPA Missense_Mutation p.N289S 0.27 tolerated(0.91) benign(0.386) TCGA-56-8308-01 9 122075655 122075655 C A BRINP1 5'UTR 0.30 TCGA-56-8308-01 9 137778355 137778355 C A FCN2 Silent p.A213A 0.39 TCGA-56-8308-01 9 139744029 139744029 G T PHPT1 Missense_Mutation p.W49C 0.17 tolerated(0.07) probably_damaging(0.991) TCGA-56-8308-01 9 140470607 140470607 C A DPH7 Silent p.P100P 0.29 TCGA-56-8308-01 9 21227934 21227934 A T IFNA17 Missense_Mutation p.L80H 0.46 tolerated(0.08) benign(0.251) TCGA-56-8308-01 9 26923199 26923199 C A PLAA Missense_Mutation p.G339V 0.61 deleterious(0) probably_damaging(0.998) TCGA-56-8308-01 9 37745828 37745828 C A FRMPD1 Missense_Mutation p.P1267T 0.41 tolerated_low_confidence(0.23) benign(0.024) TCGA-56-8308-01 9 43626981 43626981 G T SPATA31A6 Missense_Mutation p.T569N 0.18 tolerated(0.14) benign(0.227) TCGA-56-8308-01 9 6460727 6460727 G A UHRF2 Missense_Mutation p.E267K 0.29 tolerated(0.13) probably_damaging(0.965) TCGA-56-8308-01 9 82267701 82267701 A T TLE4 Missense_Mutation p.H195L 0.24 tolerated(0.13) benign(0.002) TCGA-56-8308-01 9 91616864 91616864 G A S1PR3 Missense_Mutation p.S250N 0.13 deleterious(0) possibly_damaging(0.559) TCGA-56-8308-01 X 11790739 11790739 G T MSL3 Splice_Site p.X461_splice 0.61 TCGA-56-8308-01 X 122820467 122820467 T G THOC2 Missense_Mutation p.E233D 0.61 deleterious(0.04) benign(0.007) TCGA-56-8308-01 X 32486729 32486729 C G DMD Silent p.R1016R 0.60 TCGA-56-8308-01 X 86069819 86069819 G A DACH2 Missense_Mutation p.G556S 0.67 tolerated(0.41) benign(0.016) TCGA-56-8308-01 X 9900884 9900884 G C SHROOM2 Silent p.L1187L 0.50 TCGA-56-8309-01 10 108388974 108388974 T C SORCS1 Missense_Mutation p.Y883C 0.24 deleterious(0) probably_damaging(0.987) TCGA-56-8309-01 10 114204996 114204996 T C ZDHHC6 Missense_Mutation p.M67V 0.14 tolerated(0.12) benign(0.003) TCGA-56-8309-01 10 124922331 124922331 G A BUB3 Missense_Mutation p.E320K 0.17 deleterious(0.02) possibly_damaging(0.814) TCGA-56-8309-01 10 13325813 13325813 C A PHYH Silent p.G235G 0.11 TCGA-56-8309-01 10 18795452 18795452 A G CACNB2 Missense_Mutation p.R216G 0.08 deleterious(0.04) probably_damaging(0.999) TCGA-56-8309-01 10 28970420 28970420 T C BAMBI Missense_Mutation p.C104R 0.16 deleterious(0) probably_damaging(1) TCGA-56-8309-01 10 38241442 38241442 G A ZNF25 Silent p.A328A 0.18 TCGA-56-8309-01 10 89692922 89692922 T C PTEN Missense_Mutation p.C136R 0.13 deleterious(0.02) possibly_damaging(0.634) TCGA-56-8309-01 11 118343151 118343151 G T KMT2A Missense_Mutation p.R426L 0.16 benign(0.268) TCGA-56-8309-01 11 121037391 121037391 G A TECTA Missense_Mutation p.V1830M 0.17 tolerated(0.13) probably_damaging(0.979) TCGA-56-8309-01 11 123847687 123847687 C A OR10S1 Missense_Mutation p.A238S 0.23 tolerated(0.94) benign(0.361) TCGA-56-8309-01 11 123909232 123909232 G A OR10G7 Silent p.T159T 0.10 TCGA-56-8309-01 11 130340885 130340885 C T ADAMTS15 Silent p.L597L 0.15 TCGA-56-8309-01 11 4143450 4143450 G T RRM1 Missense_Mutation p.S373I 0.06 deleterious_low_confidence(0) benign(0.1) TCGA-56-8309-01 11 47354508 47354508 A G MYBPC3 Missense_Mutation p.L1116S 0.20 deleterious(0.03) possibly_damaging(0.653) TCGA-56-8309-01 11 55418897 55418897 A C OR4S2 Missense_Mutation p.D173A 0.14 deleterious(0) probably_damaging(1) TCGA-56-8309-01 11 58275172 58275172 G C OR5B21 Missense_Mutation p.A136G 0.11 deleterious_low_confidence(0.03) benign(0.129) TCGA-56-8309-01 11 64684620 64684620 C G ATG2A 5'UTR 0.08 TCGA-56-8309-01 11 6867601 6867601 C G OR10A5 Missense_Mutation p.P230A 0.11 deleterious(0.02) possibly_damaging(0.816) TCGA-56-8309-01 11 6913649 6913649 A T OR2D2 Missense_Mutation p.F28Y 0.06 deleterious(0.02) benign(0.421) TCGA-56-8309-01 11 69514109 69514109 G A FGF19 Missense_Mutation p.P191L 0.15 deleterious(0.01) possibly_damaging(0.642) TCGA-56-8309-01 11 6964384 6964384 T C ZNF215 Missense_Mutation p.V185A 0.13 tolerated(0.69) benign(0.334) TCGA-56-8309-01 11 84996343 84996343 T C DLG2 Missense_Mutation p.E36G 0.13 deleterious_low_confidence(0.03) benign(0.051) TCGA-56-8309-01 12 117681103 117681103 T G NOS1 Missense_Mutation p.Q1021H 0.14 tolerated(0.06) benign(0.018) TCGA-56-8309-01 12 122685454 122685454 G A LRRC43 Silent p.L594L 0.18 TCGA-56-8309-01 12 54928969 54928969 A - NCKAP1L Frame_Shift_Del p.N982Ifs*2 0.15 TCGA-56-8309-01 12 7842663 7842663 G T GDF3 Silent p.T302T 0.14 TCGA-56-8309-01 12 91396275 91396275 A G EPYC Missense_Mutation p.L23P 0.10 tolerated(0.36) benign(0) TCGA-56-8309-01 12 96272019 96272019 A G CCDC38 Silent p.F416F 0.14 TCGA-56-8309-01 12 99097221 99097221 G T APAF1 Missense_Mutation p.D847Y 0.13 deleterious(0.04) probably_damaging(0.975) TCGA-56-8309-01 13 102527536 102527536 T A FGF14 Missense_Mutation p.T107S 0.08 tolerated(0.51) benign(0.017) TCGA-56-8309-01 13 108862184 108862184 C A LIG4 Missense_Mutation p.G478V 0.16 deleterious(0) probably_damaging(0.958) TCGA-56-8309-01 13 79951593 79951593 G C RBM26 Missense_Mutation p.P83R 0.23 deleterious(0.03) unknown(0) TCGA-56-8309-01 14 106963103 106963103 G T IGHV1-45 Missense_Mutation p.P60H 0.15 tolerated(0.08) benign(0.393) TCGA-56-8309-01 14 23874952 23874952 A G MYH6 Silent p.L77L 0.14 TCGA-56-8309-01 14 35872512 35872512 G - NFKBIA Frame_Shift_Del p.L131Wfs*33 0.11 TCGA-56-8309-01 15 43910024 43910024 C T STRC Missense_Mutation p.D199N 0.12 tolerated(0.12) possibly_damaging(0.492) TCGA-56-8309-01 15 88679201 88679201 C G NTRK3 Missense_Mutation p.G279A 0.05 tolerated(0.78) probably_damaging(0.947) TCGA-56-8309-01 16 15808867 15808867 G T MYH11 Silent p.R1902R 0.08 TCGA-56-8309-01 16 1814158 1814158 G T MAPK8IP3 Missense_Mutation p.V689L 0.12 tolerated(0.82) benign(0.14) TCGA-56-8309-01 16 19126501 19126501 G T ITPRIPL2 Missense_Mutation p.V240L 0.20 tolerated(0.65) possibly_damaging(0.785) TCGA-56-8309-01 16 2223925 2223925 A T TRAF7 Missense_Mutation p.Y380F 0.16 tolerated(0.4) benign(0.01) TCGA-56-8309-01 16 23457274 23457274 G A COG7 Missense_Mutation p.H60Y 0.20 tolerated(0.69) benign(0.217) TCGA-56-8309-01 16 29825762 29825762 G A PRRT2 Missense_Mutation p.A330T 0.11 tolerated(0.08) possibly_damaging(0.704) TCGA-56-8309-01 16 8997161 8997161 C A USP7 Silent p.S601S 0.13 TCGA-56-8309-01 17 15968247 15968247 A C NCOR1 Missense_Mutation p.Y1680D 0.25 probably_damaging(0.997) TCGA-56-8309-01 17 37371431 37371431 G T STAC2 Silent p.S213S 0.07 TCGA-56-8309-01 17 39086350 39086350 T - KRT23 Splice_Site p.X160_splice 0.14 TCGA-56-8309-01 17 40481606 40481606 T A STAT3 Missense_Mutation p.N400I 0.12 tolerated(0.07) possibly_damaging(0.549) TCGA-56-8309-01 17 45822358 45822358 G T TBX21 Missense_Mutation p.A412S 0.15 tolerated(0.74) benign(0.037) TCGA-56-8309-01 17 65132275 65132275 G A HELZ Missense_Mutation p.T998I 0.12 deleterious(0) probably_damaging(0.999) TCGA-56-8309-01 17 7005463 7005463 T C ASGR2 Missense_Mutation p.D239G 0.16 deleterious(0.03) benign(0.146) TCGA-56-8309-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.16 tolerated(0.11) benign(0.308) TCGA-56-8309-01 17 79477816 79477816 C T ACTG1 Missense_Mutation p.G343D 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-56-8309-01 18 12836879 12836879 G A PTPN2 Missense_Mutation p.R58C 0.34 deleterious(0.02) possibly_damaging(0.705) TCGA-56-8309-01 18 2891815 2891815 A T EMILIN2 Missense_Mutation p.M564L 0.33 tolerated(1) benign(0) TCGA-56-8309-01 19 10158131 10158131 C A C3P1 RNA 0.09 TCGA-56-8309-01 19 11649723 11649723 G T CNN1 5'UTR 0.23 TCGA-56-8309-01 19 11657748 11657748 A T CNN1 Silent p.T118T 0.16 TCGA-56-8309-01 19 12874388 12874388 T G HOOK2 Missense_Mutation p.Q655P 0.16 deleterious(0.02) possibly_damaging(0.811) TCGA-56-8309-01 19 2717667 2717667 C G DIRAS1 Missense_Mutation p.Q46H 0.12 tolerated(0.06) benign(0.054) TCGA-56-8309-01 19 48981802 48981802 C G CYTH2 Missense_Mutation p.I355M 0.21 tolerated(0.33) benign(0.432) TCGA-56-8309-01 19 52146643 52146643 C A SIGLEC14 Missense_Mutation p.G386C 0.17 deleterious(0) possibly_damaging(0.647) TCGA-56-8309-01 19 54966667 54966667 C T LENG8 Silent p.L316L 0.11 TCGA-56-8309-01 19 7184375 7184375 T C INSR Missense_Mutation p.N309S 0.18 tolerated(0.08) benign(0.105) TCGA-56-8309-01 19 9639294 9639294 T C ZNF426 Missense_Mutation p.Y476C 0.14 deleterious(0) probably_damaging(0.987) TCGA-56-8309-01 1 103474072 103474072 C A COL11A1 Missense_Mutation p.G544W 0.12 unknown(0) TCGA-56-8309-01 1 1198738 1198738 T C UBE2J2 Missense_Mutation p.T70A 0.12 deleterious(0) possibly_damaging(0.877) TCGA-56-8309-01 1 155034450 155034450 A G ADAM15 Missense_Mutation p.K808R 0.12 tolerated(0.09) benign(0.41) TCGA-56-8309-01 1 155034451 155034451 G T ADAM15 Missense_Mutation p.K808N 0.12 deleterious(0.01) possibly_damaging(0.694) TCGA-56-8309-01 1 156568892 156568892 T C GPATCH4 Intron 0.22 TCGA-56-8309-01 1 159923125 159923125 A G SLAMF9 Missense_Mutation p.M122T 0.10 tolerated(1) benign(0.003) TCGA-56-8309-01 1 169697355 169697355 G A SELE Nonsense_Mutation p.R375* 0.14 TCGA-56-8309-01 1 216062029 216062029 C T USH2A Silent p.V2654V 0.16 TCGA-56-8309-01 1 247902332 247902332 G C OR14K1 Missense_Mutation p.C139S 0.14 deleterious(0.03) possibly_damaging(0.837) TCGA-56-8309-01 1 248402677 248402677 G A OR2M4 Nonsense_Mutation p.W149* 0.13 TCGA-56-8309-01 1 26314737 26314737 C A PAFAH2 Missense_Mutation p.G109V 0.19 deleterious(0) probably_damaging(1) TCGA-56-8309-01 1 40922637 40922637 C T ZFP69B Silent p.D78D 0.26 TCGA-56-8309-01 1 52849561 52849561 C A ORC1 Missense_Mutation p.A602S 0.13 tolerated(0.15) benign(0.309) TCGA-56-8309-01 1 55589243 55589243 G T USP24 Missense_Mutation p.P1385T 0.35 tolerated(0.92) benign(0.001) TCGA-56-8309-01 1 6191762 6191762 C G CHD5 Missense_Mutation p.G1064A 0.08 deleterious(0) probably_damaging(0.977) TCGA-56-8309-01 1 63005441 63005441 T C DOCK7 Missense_Mutation p.I1025M 0.18 deleterious(0) possibly_damaging(0.894) TCGA-56-8309-01 20 25472099 25472099 C A NINL Missense_Mutation p.R458L 0.14 deleterious(0) benign(0.217) TCGA-56-8309-01 20 854983 854983 G T ANGPT4 Missense_Mutation p.T432N 0.12 deleterious(0) probably_damaging(1) TCGA-56-8309-01 22 29091771 29091771 G C CHEK2 Missense_Mutation p.L439V 0.07 deleterious(0.01) benign(0.211) TCGA-56-8309-01 22 43870794 43870794 G T MPPED1 Missense_Mutation p.Q195H 0.07 deleterious(0) probably_damaging(0.985) TCGA-56-8309-01 2 1271294 1271294 G T SNTG2 Missense_Mutation p.W412L 0.08 deleterious(0.04) benign(0.144) TCGA-56-8309-01 2 1271295 1271295 G T SNTG2 Missense_Mutation p.W412C 0.08 deleterious(0) probably_damaging(0.977) TCGA-56-8309-01 2 141110533 141110533 C A LRP1B Missense_Mutation p.C3880F 0.06 possibly_damaging(0.639) TCGA-56-8309-01 2 158287371 158287371 C A CYTIP Splice_Site p.X128_splice 0.11 TCGA-56-8309-01 2 1684062 1684062 C G PXDN Silent p.A211A 0.09 TCGA-56-8309-01 2 179429136 179429136 A G TTN Silent p.Y27241Y 0.17 TCGA-56-8309-01 2 179584439 179584439 C G TTN Missense_Mutation p.R7927T 0.12 TCGA-56-8309-01 2 179610269 179610269 C G TTN Intron 0.24 TCGA-56-8309-01 2 216200798 216200798 C G ATIC Missense_Mutation p.A350G 0.10 deleterious(0) possibly_damaging(0.904) TCGA-56-8309-01 2 230910526 230910526 G T SLC16A14 Missense_Mutation p.A439D 0.18 deleterious(0) probably_damaging(0.969) TCGA-56-8309-01 2 233321914 233321914 G T ALPI Missense_Mutation p.G177V 0.06 deleterious(0) probably_damaging(0.997) TCGA-56-8309-01 2 233944043 233944043 A C INPP5D Splice_Site p.X45_splice 0.11 TCGA-56-8309-01 2 27505720 27505720 C T TRIM54 Missense_Mutation p.P41S 0.11 deleterious(0) possibly_damaging(0.706) TCGA-56-8309-01 2 48687020 48687020 C T PPP1R21 Missense_Mutation p.T168I 0.09 tolerated(0.19) probably_damaging(0.942) TCGA-56-8309-01 3 113955346 113955346 A T ZNF80 Missense_Mutation p.S192R 0.11 tolerated(0.43) benign(0.007) TCGA-56-8309-01 3 120134823 120134823 C A FSTL1 Missense_Mutation p.G39C 0.03 deleterious(0) probably_damaging(1) TCGA-56-8309-01 3 126126083 126126083 A G CCDC37 Missense_Mutation p.R40G 0.09 tolerated_low_confidence(0.25) benign(0) TCGA-56-8309-01 3 130992410 130992410 C T NEK11 Silent p.R570R 0.11 TCGA-56-8309-01 3 158787131 158787131 A T IQCJ 5'UTR 0.21 TCGA-56-8309-01 3 182937713 182937713 C T MCF2L2 Splice_Site p.X768_splice 0.12 TCGA-56-8309-01 3 97167530 97167530 A G EPHA6 Missense_Mutation p.Y617C 0.14 tolerated(0.18) probably_damaging(0.971) TCGA-56-8309-01 3 97356864 97356864 G C EPHA6 Missense_Mutation p.V908L 0.16 deleterious(0.02) probably_damaging(0.995) TCGA-56-8309-01 3 97869012 97869012 C A OR5H14 Silent p.G261G 0.13 TCGA-56-8309-01 4 104044048 104044048 C T CENPE Missense_Mutation p.A2375T 0.09 benign(0.004) TCGA-56-8309-01 4 151242512 151242512 C A LRBA Missense_Mutation p.L2498F 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-56-8309-01 4 158257860 158257860 T A GRIA2 Nonsense_Mutation p.L602* 0.12 TCGA-56-8309-01 4 159092094 159092094 A G FAM198B Missense_Mutation p.L145S 0.09 tolerated(0.36) possibly_damaging(0.765) TCGA-56-8309-01 4 175564974 175564974 A T GLRA3 Missense_Mutation p.I453N 0.18 deleterious_low_confidence(0) possibly_damaging(0.836) TCGA-56-8309-01 4 57797818 57797818 G A REST Missense_Mutation p.E932K 0.21 deleterious(0.04) benign(0.007) TCGA-56-8309-01 4 70596382 70596382 G T SULT1B1 Silent p.I205I 0.08 TCGA-56-8309-01 4 71509616 71509616 G A ENAM Missense_Mutation p.E825K 0.06 deleterious(0.01) benign(0.444) TCGA-56-8309-01 4 8293097 8293097 A G HTRA3 Missense_Mutation p.K237E 0.13 tolerated(0.53) benign(0.03) TCGA-56-8309-01 4 985403 985403 A T SLC26A1 Missense_Mutation p.M30K 0.12 tolerated(0.38) benign(0.006) TCGA-56-8309-01 5 118969918 118969918 G A FAM170A Missense_Mutation p.E159K 0.15 deleterious(0.03) benign(0.291) TCGA-56-8309-01 5 140720013 140720013 C T PCDHGA2 Missense_Mutation p.A492V 0.23 tolerated_low_confidence(0.31) benign(0.168) TCGA-56-8309-01 5 32089757 32089757 C G PDZD2 Missense_Mutation p.P2068R 0.16 deleterious(0) possibly_damaging(0.777) TCGA-56-8309-01 5 32312985 32312985 G C MTMR12 5'UTR 0.33 TCGA-56-8309-01 5 45262571 45262571 G T HCN1 Missense_Mutation p.Q709K 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.857) TCGA-56-8309-01 5 5232575 5232575 C A ADAMTS16 Missense_Mutation p.S599Y 0.10 deleterious(0) probably_damaging(0.997) TCGA-56-8309-01 5 76326743 76326743 A G AGGF1 Missense_Mutation p.H51R 0.12 tolerated(0.49) benign(0.004) TCGA-56-8309-01 5 894944 894944 A G TRIP13 Silent p.L45L 0.31 TCGA-56-8309-01 6 123539702 123539702 A G TRDN 3'UTR 0.11 TCGA-56-8309-01 6 131962604 131962604 G T ENPP3 Missense_Mutation p.A30S 0.15 tolerated(0.17) benign(0.046) TCGA-56-8309-01 6 146264848 146264848 C G SHPRH Missense_Mutation p.D557H 0.16 deleterious_low_confidence(0.05) possibly_damaging(0.903) TCGA-56-8309-01 6 146720449 146720449 C G GRM1 Silent p.G758G 0.15 TCGA-56-8309-01 6 170597544 170597544 C G DLL1 Missense_Mutation p.R151S 0.16 tolerated(0.08) benign(0.218) TCGA-56-8309-01 6 24178691 24178691 T A DCDC2 Missense_Mutation p.Q398L 0.22 tolerated_low_confidence(0.12) benign(0.001) TCGA-56-8309-01 6 41196541 41196541 C T TREML4 Silent p.P51P 0.05 TCGA-56-8309-01 6 66063458 66063458 A G EYS Missense_Mutation p.V451A 0.08 tolerated(1) benign(0.036) TCGA-56-8309-01 6 84644441 84644441 G T CYB5R4 Missense_Mutation p.K314N 0.18 deleterious(0) probably_damaging(0.93) TCGA-56-8309-01 6 88854789 88854789 G T CNR1 Missense_Mutation p.Q69K 0.27 tolerated_low_confidence(0.93) benign(0.003) TCGA-56-8309-01 6 97533188 97533188 A T KLHL32 Missense_Mutation p.T200S 0.16 tolerated(0.48) probably_damaging(0.996) TCGA-56-8309-01 7 113519977 113519977 G T PPP1R3A Nonsense_Mutation p.C390* 0.15 TCGA-56-8309-01 7 130337710 130337710 T G COPG2 Missense_Mutation p.S108R 0.16 deleterious(0) probably_damaging(0.994) TCGA-56-8309-01 7 135312748 135312748 G C NUP205 Missense_Mutation p.M1607I 0.12 tolerated(0.31) benign(0.001) TCGA-56-8309-01 7 142168515 142168515 T C TRBV5-4 Missense_Mutation p.R70G 0.19 tolerated(0.26) benign(0.001) TCGA-56-8309-01 7 148876128 148876128 C T ZNF398 Silent p.T388T 0.12 TCGA-56-8309-01 7 150417510 150417510 G A GIMAP1 Missense_Mutation p.G140R 0.14 deleterious(0) probably_damaging(1) TCGA-56-8309-01 7 1523441 1523441 C G INTS1 Missense_Mutation p.A1160P 0.16 deleterious(0.02) probably_damaging(0.986) TCGA-56-8309-01 7 154862962 154862962 T A HTR5A-AS1 Missense_Mutation p.I18F 0.10 deleterious_low_confidence(0.02) benign(0.402) TCGA-56-8309-01 7 154862964 154862964 G C HTR5A-AS1 Missense_Mutation p.A17G 0.15 tolerated_low_confidence(0.15) possibly_damaging(0.709) TCGA-56-8309-01 7 6431652 6431652 C T RAC1 Missense_Mutation p.P69S 0.08 deleterious(0) probably_damaging(0.991) TCGA-56-8309-01 7 87913527 87913527 C G STEAP4 Missense_Mutation p.E20Q 0.12 tolerated(0.18) benign(0.033) TCGA-56-8309-01 7 88965589 88965589 T C ZNF804B Missense_Mutation p.L1098P 0.12 tolerated_low_confidence(0.12) benign(0.037) TCGA-56-8309-01 7 99459399 99459399 C G CYP3A43 Missense_Mutation p.P397R 0.13 deleterious(0.01) probably_damaging(0.979) TCGA-56-8309-01 8 110477062 110477062 C A PKHD1L1 Silent p.A2667A 0.18 TCGA-56-8309-01 8 126073382 126073382 T C KIAA0196 Missense_Mutation p.Y488C 0.18 tolerated(0.09) probably_damaging(0.99) TCGA-56-8309-01 8 139180268 139180268 G T FAM135B Silent p.S376S 0.13 TCGA-56-8309-01 8 43211925 43211925 C A POTEA RNA 0.17 TCGA-56-8309-01 8 67047342 67047342 C G TRIM55 Missense_Mutation p.H153Q 0.08 deleterious(0.01) probably_damaging(1) TCGA-56-8309-01 8 91937822 91937822 G A NECAB1 Missense_Mutation p.R185H 0.09 deleterious(0.02) probably_damaging(0.926) TCGA-56-8309-01 8 92301363 92301363 G C SLC26A7 Splice_Site p.X65_splice 0.16 TCGA-56-8309-01 9 130674898 130674898 C A ST6GALNAC4 Missense_Mutation p.G87V 0.15 probably_damaging(0.997) TCGA-56-8309-01 9 90312113 90312113 C T DAPK1 Missense_Mutation p.P869S 0.24 tolerated(0.26) benign(0.001) TCGA-56-8309-01 9 96435922 96435922 G T PHF2 Missense_Mutation p.A802S 0.20 deleterious(0.02) unknown(0) TCGA-56-8309-01 X 130220016 130220016 G T ARHGAP36 Missense_Mutation p.V412F 0.23 deleterious(0) probably_damaging(0.998) TCGA-56-8309-01 X 135426830 135426830 C T GPR112 Missense_Mutation p.S322L 0.41 deleterious(0) benign(0.006) TCGA-56-8309-01 X 78011233 78011233 A G LPAR4 Silent p.A289A 0.26 TCGA-56-8503-01 10 103869212 103869212 T C LDB1 Missense_Mutation p.Y262C 0.12 tolerated(0.05) probably_damaging(0.999) TCGA-56-8503-01 10 124742483 124742483 G C PSTK Missense_Mutation p.D151H 0.09 deleterious(0) probably_damaging(0.991) TCGA-56-8503-01 10 22657601 22657601 A T SPAG6 Missense_Mutation p.N156Y 0.11 deleterious(0) probably_damaging(0.981) TCGA-56-8503-01 10 50121568 50121568 C T LRRC18 Silent p.L211L 0.05 TCGA-56-8503-01 10 92508898 92508898 G C HTR7 Missense_Mutation p.I331M 0.10 deleterious(0) probably_damaging(0.989) TCGA-56-8503-01 10 95400684 95400684 G A PDE6C Missense_Mutation p.R582K 0.15 tolerated(1) benign(0.006) TCGA-56-8503-01 10 96352000 96352000 G T HELLS Missense_Mutation p.L594F 0.11 deleterious(0) probably_damaging(0.994) TCGA-56-8503-01 10 96352001 96352001 G T HELLS Missense_Mutation p.V595L 0.11 deleterious(0.02) benign(0.23) TCGA-56-8503-01 11 102477333 102477333 A G MMP20 Missense_Mutation p.C296R 0.10 deleterious(0) probably_damaging(0.999) TCGA-56-8503-01 11 117329574 117329574 C G DSCAML1 Missense_Mutation p.R1215P 0.06 tolerated(0.32) possibly_damaging(0.571) TCGA-56-8503-01 11 124266625 124266625 A C OR8B3 Missense_Mutation p.M208R 0.08 deleterious_low_confidence(0.02) benign(0.001) TCGA-56-8503-01 11 19905862 19905862 C G NAV2 Missense_Mutation p.Q265E 0.07 tolerated(0.07) possibly_damaging(0.759) TCGA-56-8503-01 11 36680683 36680683 A C C11orf74 Missense_Mutation p.K205Q 0.24 deleterious(0.02) benign(0.269) TCGA-56-8503-01 11 45268003 45268003 G A SYT13 Missense_Mutation p.R303C 0.10 deleterious(0) probably_damaging(1) TCGA-56-8503-01 11 59211184 59211184 C G OR5A1 Missense_Mutation p.F181L 0.11 deleterious(0.02) probably_damaging(1) TCGA-56-8503-01 11 60183676 60183676 C A MS4A14 Missense_Mutation p.A445E 0.08 tolerated(0.65) benign(0.096) TCGA-56-8503-01 11 67077368 67077368 C G SSH3 Silent p.L446L 0.14 TCGA-56-8503-01 11 67077416 67077416 C G SSH3 Missense_Mutation p.I462M 0.14 tolerated(0.08) benign(0.218) TCGA-56-8503-01 11 67395614 67395614 G A NUDT8 Silent p.L172L 0.09 TCGA-56-8503-01 11 71932226 71932226 C A FOLR2 Missense_Mutation p.Q116K 0.13 tolerated(0.24) benign(0.098) TCGA-56-8503-01 11 77635932 77635932 A C INTS4 Missense_Mutation p.S460A 0.05 deleterious(0) probably_damaging(0.927) TCGA-56-8503-01 11 85396000 85396000 C T CCDC89 3'UTR 0.25 TCGA-56-8503-01 12 100904696 100904696 C A NR1H4 Missense_Mutation p.P84T 0.16 tolerated(0.06) benign(0.025) TCGA-56-8503-01 12 109577322 109577322 G A ACACB Missense_Mutation p.E38K 0.05 tolerated_low_confidence(0.12) benign(0.002) TCGA-56-8503-01 12 110834214 110834214 G A ANAPC7 Missense_Mutation p.H83Y 0.10 tolerated(1) benign(0) TCGA-56-8503-01 12 111885525 111885525 C T SH2B3 Silent p.V434V 0.07 TCGA-56-8503-01 12 120589023 120589023 G A GCN1L1 Missense_Mutation p.S1412L 0.08 benign(0.242) TCGA-56-8503-01 12 121881931 121881931 C G KDM2B Missense_Mutation p.D779H 0.08 deleterious(0) possibly_damaging(0.553) TCGA-56-8503-01 12 122763577 122763577 C G CLIP1 Missense_Mutation p.E1255Q 0.08 deleterious(0) probably_damaging(0.985) TCGA-56-8503-01 12 129559316 129559316 C A TMEM132D Missense_Mutation p.A802S 0.09 tolerated(0.4) benign(0.287) TCGA-56-8503-01 12 132632250 132632250 G A NOC4L Missense_Mutation p.D176N 0.05 deleterious(0) benign(0.063) TCGA-56-8503-01 12 32145362 32145362 G C KIAA1551 Missense_Mutation p.E1713Q 0.06 deleterious(0.01) probably_damaging(0.974) TCGA-56-8503-01 12 50045234 50045234 C G FMNL3 Splice_Site p.X535_splice 0.15 TCGA-56-8503-01 12 53459610 53459610 G A SPRYD3 3'UTR 0.06 TCGA-56-8503-01 12 55794527 55794527 C A OR6C65 Missense_Mutation p.T72K 0.06 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-56-8503-01 12 7053317 7053317 G A C12orf57 Silent p.L11L 0.08 TCGA-56-8503-01 12 85680680 85680680 G A ALX1 Missense_Mutation p.G194D 0.09 deleterious(0) benign(0.08) TCGA-56-8503-01 13 22245962 22245962 G T FGF9 5'UTR 0.08 TCGA-56-8503-01 13 38928424 38928424 A T UFM1 Silent p.A36A 0.19 TCGA-56-8503-01 13 48547529 48547529 T A SUCLA2 Splice_Site p.X179_splice 0.15 TCGA-56-8503-01 14 19378064 19378064 C T OR11H12 Silent p.A157A 0.05 TCGA-56-8503-01 14 23057923 23057923 G C DAD1 Silent p.L47L 0.07 TCGA-56-8503-01 14 51375544 51375544 A G PYGL Silent p.H769H 0.10 TCGA-56-8503-01 14 52164907 52164907 C T FRMD6 Silent p.L49L 0.11 TCGA-56-8503-01 14 57857975 57857975 C T NAA30 Silent p.S100S 0.08 TCGA-56-8503-01 14 57857978 57857978 C G NAA30 Silent p.L101L 0.09 TCGA-56-8503-01 14 81421983 81421983 C A TSHR 5'UTR 0.09 TCGA-56-8503-01 14 95029874 95029874 C G SERPINA4 Missense_Mutation p.H19D 0.09 deleterious(0.02) unknown(0) TCGA-56-8503-01 15 24923818 24923818 C T NPAP1 Missense_Mutation p.P935L 0.07 deleterious(0.01) probably_damaging(0.986) TCGA-56-8503-01 15 30029471 30029471 G A TJP1 Silent p.L468L 0.05 TCGA-56-8503-01 15 35178833 35178833 C T AQR Missense_Mutation p.R904Q 0.09 tolerated(0.22) possibly_damaging(0.49) TCGA-56-8503-01 15 35529709 35529709 G A ANP32AP1 RNA 0.09 TCGA-56-8503-01 15 41037311 41037311 G C RMDN3 Missense_Mutation p.S224C 0.08 deleterious(0.05) benign(0.413) TCGA-56-8503-01 15 48450981 48450981 C G MYEF2 Missense_Mutation p.A286P 0.05 deleterious(0) probably_damaging(1) TCGA-56-8503-01 15 68600035 68600035 C G ITGA11 Splice_Site p.X1059_splice 0.10 TCGA-56-8503-01 15 90321303 90321303 C G MESP2 Missense_Mutation p.S311C 0.09 tolerated(0.06) probably_damaging(0.921) TCGA-56-8503-01 16 1399575 1399575 C T TSR3 Missense_Mutation p.E268K 0.11 deleterious(0.02) benign(0.091) TCGA-56-8503-01 16 2240153 2240153 A G CASKIN1 Silent p.H55H 0.08 TCGA-56-8503-01 16 58043942 58043942 G C USB1 Missense_Mutation p.Q125H 0.06 deleterious(0.04) benign(0.033) TCGA-56-8503-01 16 70405989 70405989 C T DDX19A 3'UTR 0.07 TCGA-56-8503-01 17 27959241 27959241 G C SSH2 Missense_Mutation p.H964D 0.12 tolerated_low_confidence(0.65) benign(0.017) TCGA-56-8503-01 17 29326057 29326057 G C RNF135 Missense_Mutation p.E383Q 0.08 deleterious(0.03) possibly_damaging(0.901) TCGA-56-8503-01 17 4711391 4711392 AT - PLD2 Frame_Shift_Del p.T76Qfs*77 0.14 TCGA-56-8503-01 17 56650670 56650670 C A TEX14 Splice_Site p.X1174_splice 0.06 TCGA-56-8503-01 17 7577120 7577120 C A TP53 Missense_Mutation p.R273L 0.13 deleterious(0) probably_damaging(0.993) TCGA-56-8503-01 18 29867294 29867294 G C GAREM Silent p.P422P 0.05 TCGA-56-8503-01 18 48593491 48593494 AGAC - SMAD4 Frame_Shift_Del p.D415Efs*20 0.18 TCGA-56-8503-01 19 21991659 21991659 C T ZNF43 Missense_Mutation p.E394K 0.12 deleterious(0.01) possibly_damaging(0.677) TCGA-56-8503-01 19 2271452 2271452 C G OAZ1 Missense_Mutation p.H72D 0.27 deleterious(0.01) possibly_damaging(0.811) TCGA-56-8503-01 19 34263950 34263950 C T CHST8 Silent p.P419P 0.10 TCGA-56-8503-01 19 49464368 49464368 C T BAX 3'UTR 0.13 TCGA-56-8503-01 19 49845726 49845726 T A TEAD2 Missense_Mutation p.N404I 0.11 deleterious(0) probably_damaging(0.989) TCGA-56-8503-01 19 51361823 51361823 G T KLK3 Missense_Mutation p.R201L 0.05 tolerated(0.43) benign(0) TCGA-56-8503-01 19 53269165 53269165 C T ZNF600 Missense_Mutation p.C615Y 0.13 deleterious(0) probably_damaging(0.996) TCGA-56-8503-01 19 53393583 53393583 T G ZNF320 Splice_Site 0.09 TCGA-56-8503-01 19 54214318 54214318 C T MIR524 RNA 0.07 TCGA-56-8503-01 19 54257353 54257353 G C MIR527 RNA 0.07 TCGA-56-8503-01 19 57328503 57328503 G T PEG3 Missense_Mutation p.S436Y 0.12 tolerated(0.3) possibly_damaging(0.73) TCGA-56-8503-01 19 58619348 58619348 G C ZSCAN18 Intron 0.12 TCGA-56-8503-01 19 59082663 59082663 C T MZF1 Missense_Mutation p.E32K 0.11 deleterious(0.01) benign(0.051) TCGA-56-8503-01 19 7535057 7535057 C G ARHGEF18 Missense_Mutation p.S1132C 0.11 deleterious(0.01) benign(0.253) TCGA-56-8503-01 19 7987608 7987608 C T SNAPC2 Missense_Mutation p.P322S 0.11 deleterious(0) probably_damaging(1) TCGA-56-8503-01 19 9084810 9084810 G A MUC16 Silent p.F2335F 0.09 TCGA-56-8503-01 1 110768705 110768705 G T KCNC4 Missense_Mutation p.R575L 0.12 tolerated_low_confidence(0.22) possibly_damaging(0.761) TCGA-56-8503-01 1 11115915 11115915 C A SRM Missense_Mutation p.V230L 0.10 tolerated(0.18) benign(0.016) TCGA-56-8503-01 1 12726603 12726603 G A AADACL4 Missense_Mutation p.E361K 0.05 deleterious(0.01) possibly_damaging(0.764) TCGA-56-8503-01 1 153994815 153994815 C G NUP210L Missense_Mutation p.D1435H 0.11 deleterious(0) probably_damaging(1) TCGA-56-8503-01 1 161967785 161967785 G A OLFML2B Missense_Mutation p.P435L 0.09 tolerated(0.44) benign(0.001) TCGA-56-8503-01 1 186114621 186114621 G A HMCN1 Missense_Mutation p.D4785N 0.07 probably_damaging(0.992) TCGA-56-8503-01 1 216850556 216850556 G A ESRRG Missense_Mutation p.P117S 0.13 tolerated(0.9) benign(0.001) TCGA-56-8503-01 1 229588392 229588392 T C NUP133 Splice_Site p.X994_splice 0.12 TCGA-56-8503-01 1 235929568 235929568 C G LYST Missense_Mutation p.E1978Q 0.08 tolerated(0.12) probably_damaging(0.985) TCGA-56-8503-01 1 247737485 247737485 C A GCSAML Missense_Mutation p.T70N 0.09 deleterious(0) benign(0.258) TCGA-56-8503-01 1 247921522 247921522 G A OR1C1 Missense_Mutation p.L63F 0.15 deleterious(0) probably_damaging(0.986) TCGA-56-8503-01 1 34128543 34128543 T A CSMD2 Missense_Mutation p.Q1361L 0.12 deleterious(0.04) benign(0.309) TCGA-56-8503-01 1 35653660 35653660 C G SFPQ Missense_Mutation p.E577Q 0.06 deleterious(0.03) possibly_damaging(0.727) TCGA-56-8503-01 1 35926016 35926016 G A KIAA0319L Silent p.I439I 0.10 TCGA-56-8503-01 1 39815296 39815296 G C MACF1 Missense_Mutation p.L1592F 0.10 benign(0.044) TCGA-56-8503-01 1 41236342 41236342 C G NFYC Intron 0.13 TCGA-56-8503-01 1 43076686 43076686 C G CCDC30 Missense_Mutation p.S474C 0.15 deleterious(0.01) possibly_damaging(0.902) TCGA-56-8503-01 1 95322989 95322989 A G SLC44A3 Missense_Mutation p.S391G 0.14 deleterious(0.01) benign(0.191) TCGA-56-8503-01 20 31897559 31897559 C T BPIFB1 Missense_Mutation p.P481S 0.10 tolerated_low_confidence(0.13) benign(0.021) TCGA-56-8503-01 20 35504605 35504605 C G TLDC2 Missense_Mutation p.R10G 0.04 tolerated(0.07) benign(0.26) TCGA-56-8503-01 20 36149660 36149660 C A NNAT 5'UTR 0.09 TCGA-56-8503-01 20 55803323 55803323 C T BMP7 Silent p.R191R 0.14 TCGA-56-8503-01 20 60989318 60989318 C T RBBP8NL Silent p.Q363Q 0.16 TCGA-56-8503-01 21 10969087 10969087 G A TPTE Missense_Mutation p.P54L 0.08 deleterious(0.04) benign(0.041) TCGA-56-8503-01 21 28296910 28296910 G C ADAMTS5 Missense_Mutation p.P752R 0.11 deleterious(0) probably_damaging(1) TCGA-56-8503-01 21 28296911 28296911 G T ADAMTS5 Missense_Mutation p.P752T 0.12 deleterious(0) probably_damaging(1) TCGA-56-8503-01 22 20082258 20082258 C T DGCR8 Silent p.L576L 0.14 TCGA-56-8503-01 22 22516795 22516795 C A IGLV4-60 Nonsense_Mutation p.S28* 0.10 TCGA-56-8503-01 22 37334319 37334319 C T CSF2RB Silent p.C823C 0.09 TCGA-56-8503-01 22 38341073 38341073 G T C22orf23 Missense_Mutation p.P153T 0.04 deleterious(0.05) possibly_damaging(0.588) TCGA-56-8503-01 22 39826118 39826118 C T TAB1 Missense_Mutation p.S469L 0.11 tolerated(0.06) benign(0.026) TCGA-56-8503-01 2 101624439 101624439 T C TBC1D8 Silent p.L1089L 0.08 TCGA-56-8503-01 2 103322345 103322345 A G SLC9A2 Missense_Mutation p.N673S 0.17 tolerated(0.68) benign(0.214) TCGA-56-8503-01 2 112994204 112994204 T C ZC3H8 Missense_Mutation p.K147E 0.09 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-56-8503-01 2 131519739 131519739 G T AMER3 Nonsense_Mutation p.E32* 0.17 TCGA-56-8503-01 2 166243366 166243366 C G SCN2A Missense_Mutation p.D1554E 0.22 tolerated(0.28) benign(0.073) TCGA-56-8503-01 2 167085223 167085223 C G SCN9A Missense_Mutation p.G1384A 0.12 deleterious(0.02) possibly_damaging(0.822) TCGA-56-8503-01 2 173426997 173426997 G A PDK1 Missense_Mutation p.E130K 0.09 deleterious(0.04) benign(0.002) TCGA-56-8503-01 2 178977408 178977408 C G RBM45 Missense_Mutation p.F45L 0.07 deleterious(0) possibly_damaging(0.788) TCGA-56-8503-01 2 185802576 185802576 G T ZNF804A Missense_Mutation p.R818I 0.13 deleterious(0.03) benign(0.125) TCGA-56-8503-01 2 20200220 20200220 C G MATN3 Missense_Mutation p.D384H 0.10 deleterious(0) probably_damaging(0.999) TCGA-56-8503-01 2 29293613 29293613 C G C2orf71 Missense_Mutation p.R1172T 0.06 tolerated(0.09) benign(0.399) TCGA-56-8503-01 2 7030359 7030359 G C RSAD2 Missense_Mutation p.R264T 0.07 deleterious(0.01) possibly_damaging(0.513) TCGA-56-8503-01 2 96933208 96933208 G T CIAO1 Splice_Site p.X96_splice 0.12 TCGA-56-8503-01 3 100328647 100328647 G A GPR128 5'UTR 0.09 TCGA-56-8503-01 3 108698428 108698428 G C MORC1 Missense_Mutation p.S804C 0.10 deleterious(0.01) possibly_damaging(0.681) TCGA-56-8503-01 3 113380064 113380064 C A KIAA2018 Missense_Mutation p.Q155H 0.08 probably_damaging(0.998) TCGA-56-8503-01 3 119462834 119462834 G C MAATS1 Missense_Mutation p.E565Q 0.11 deleterious(0) probably_damaging(0.975) TCGA-56-8503-01 3 164906488 164906488 C G SLITRK3 Missense_Mutation p.D711H 0.10 deleterious(0.05) possibly_damaging(0.525) TCGA-56-8503-01 3 172365808 172365808 G C NCEH1 Missense_Mutation p.Q111E 0.17 tolerated(0.59) benign(0.03) TCGA-56-8503-01 3 179597827 179597827 G C PEX5L Nonsense_Mutation p.S132* 0.05 TCGA-56-8503-01 3 182615090 182615090 G C ATP11B Splice_Site p.X1017_splice 0.06 TCGA-56-8503-01 3 183882973 183882973 G C DVL3 Missense_Mutation p.Q224H 0.10 tolerated(0.41) benign(0.099) TCGA-56-8503-01 3 183901268 183901268 A G AP2M1 Splice_Site p.X392_splice 0.08 TCGA-56-8503-01 3 186501394 186501394 C T EIF4A2 5'UTR 0.07 TCGA-56-8503-01 3 187388087 187388087 C A SST 5'UTR 0.36 TCGA-56-8503-01 3 25502706 25502706 C T RARB Silent p.S60S 0.12 TCGA-56-8503-01 3 27424690 27424690 C T SLC4A7 Missense_Mutation p.E1173K 0.20 tolerated(0.09) benign(0.353) TCGA-56-8503-01 3 38812897 38812897 A C SCN10A Missense_Mutation p.Y158D 0.06 deleterious(0) possibly_damaging(0.905) TCGA-56-8503-01 3 47889321 47889321 C A DHX30 Missense_Mutation p.P721T 0.16 deleterious(0.01) probably_damaging(0.988) TCGA-56-8503-01 3 98538067 98538067 T C DCBLD2 Missense_Mutation p.N356D 0.22 tolerated(0.08) benign(0.158) TCGA-56-8503-01 4 115748939 115748939 G C NDST4 3'UTR 0.14 TCGA-56-8503-01 4 187531169 187531169 C T FAT1 Missense_Mutation p.G3285E 0.18 probably_damaging(1) TCGA-56-8503-01 4 30725575 30725575 C G PCDH7 Missense_Mutation p.S844C 0.13 deleterious(0.01) possibly_damaging(0.769) TCGA-56-8503-01 4 38799032 38799032 T A TLR1 Missense_Mutation p.N474I 0.10 deleterious(0) probably_damaging(1) TCGA-56-8503-01 4 6107412 6107412 C T JAKMIP1 Missense_Mutation p.E138K 0.16 deleterious(0) benign(0.429) TCGA-56-8503-01 4 6107548 6107548 G T JAKMIP1 Silent p.I92I 0.12 TCGA-56-8503-01 4 7043061 7043061 G C CCDC96 Silent p.L535L 0.07 TCGA-56-8503-01 5 140214135 140214135 T C PCDHA7 Missense_Mutation p.L56P 0.08 deleterious_low_confidence(0.03) possibly_damaging(0.863) TCGA-56-8503-01 5 140517074 140517074 T C PCDHB5 Silent p.T686T 0.06 TCGA-56-8503-01 5 140720768 140720768 G C PCDHGA2 Missense_Mutation p.D744H 0.05 deleterious_low_confidence(0) possibly_damaging(0.741) TCGA-56-8503-01 5 19591204 19591204 C A CDH18 Missense_Mutation p.D321Y 0.29 deleterious(0) possibly_damaging(0.821) TCGA-56-8503-01 5 23524475 23524475 A C PRDM9 Missense_Mutation p.Q328P 0.22 deleterious(0) benign(0.238) TCGA-56-8503-01 5 77590312 77590312 G A AP3B1 Missense_Mutation p.S31L 0.05 deleterious(0.01) benign(0.005) TCGA-56-8503-01 5 78612011 78612011 C G JMY Missense_Mutation p.L950V 0.08 tolerated(0.19) probably_damaging(0.998) TCGA-56-8503-01 6 111694108 111694108 G C REV3L Missense_Mutation p.S1817C 0.12 deleterious(0) probably_damaging(0.999) TCGA-56-8503-01 6 117246782 117246782 C A RFX6 Missense_Mutation p.H615Q 0.11 tolerated_low_confidence(0.32) benign(0.001) TCGA-56-8503-01 6 123318982 123318982 C G CLVS2 Silent p.L20L 0.05 TCGA-56-8503-01 6 150023132 150023132 G A LATS1 Missense_Mutation p.P44L 0.09 tolerated_low_confidence(0.16) possibly_damaging(0.907) TCGA-56-8503-01 6 167711447 167711447 G A UNC93A Missense_Mutation p.E172K 0.08 tolerated(0.12) benign(0.091) TCGA-56-8503-01 6 18258628 18258628 G C DEK Missense_Mutation p.L52V 0.07 tolerated(0.12) benign(0.031) TCGA-56-8503-01 6 26033431 26033431 C T HIST1H2AB Silent p.E122E 0.06 TCGA-56-8503-01 6 27834581 27834581 G C HIST1H1B 3'UTR 0.24 TCGA-56-8503-01 6 27879453 27879453 A G OR2B2 Silent p.L215L 0.11 TCGA-56-8503-01 6 28543629 28543629 C G SCAND3 Missense_Mutation p.E285Q 0.08 deleterious_low_confidence(0.02) probably_damaging(0.979) TCGA-56-8503-01 6 29634038 29634038 G C MOG Silent p.L182L 0.06 TCGA-56-8503-01 6 30570082 30570082 G A PPP1R10 Missense_Mutation p.R782C 0.06 deleterious_low_confidence(0) unknown(0) TCGA-56-8503-01 6 30576937 30576937 C T PPP1R10 Silent p.L37L 0.10 TCGA-56-8503-01 6 31113579 31113579 C G CCHCR1 Missense_Mutation p.Q529H 0.07 tolerated(0.33) benign(0.126) TCGA-56-8503-01 6 31896604 31896604 G C CFB Intron 0.07 TCGA-56-8503-01 6 41011301 41011301 C A TSPO2 Missense_Mutation p.A60D 0.06 deleterious(0) probably_damaging(0.979) TCGA-56-8503-01 6 42891079 42891079 C T PTCRA Silent p.L125L 0.07 TCGA-56-8503-01 6 56438478 56438478 A G DST Missense_Mutation p.I1789T 0.16 benign(0.002) TCGA-56-8503-01 6 57046864 57046864 G T BAG2 Nonsense_Mutation p.E50* 0.10 TCGA-56-8503-01 6 70983750 70983750 T C COL9A1 Silent p.P355P 0.12 TCGA-56-8503-01 6 70983752 70983752 G T COL9A1 Missense_Mutation p.P355T 0.11 probably_damaging(1) TCGA-56-8503-01 6 80747700 80747700 A G TTK Missense_Mutation p.Y689C 0.13 deleterious(0) probably_damaging(1) TCGA-56-8503-01 6 99365597 99365597 T A FBXL4 Splice_Site p.X171_splice 0.19 TCGA-56-8503-01 7 102743992 102743992 C G NAPEPLD Missense_Mutation p.E356Q 0.10 deleterious(0.03) benign(0.297) TCGA-56-8503-01 7 11142121 11142121 C A PHF14 Nonsense_Mutation p.S888* 0.18 TCGA-56-8503-01 7 129856077 129856077 G A SSMEM1 Missense_Mutation p.E168K 0.05 deleterious(0) possibly_damaging(0.486) TCGA-56-8503-01 7 131870202 131870202 A G PLXNA4 Missense_Mutation p.V1005A 0.11 deleterious(0.03) benign(0.16) TCGA-56-8503-01 7 20795105 20795105 C T ABCB5 Missense_Mutation p.T1211I 0.15 deleterious(0) benign(0.187) TCGA-56-8503-01 7 44152474 44152474 C T AEBP1 Silent p.I845I 0.07 TCGA-56-8503-01 7 62758657 62758657 G C ZNF733P RNA 0.09 TCGA-56-8503-01 7 70239048 70239048 G T AUTS2 Missense_Mutation p.G622V 0.10 deleterious(0) probably_damaging(1) TCGA-56-8503-01 7 82579141 82579141 T A PCLO Missense_Mutation p.K3588I 0.05 unknown(0) TCGA-56-8503-01 7 99689411 99689411 G A COPS6 Silent p.%3D 0.17 TCGA-56-8503-01 8 106810962 106810962 C T ZFPM2 Silent p.F250F 0.08 TCGA-56-8503-01 8 113347626 113347626 G C CSMD3 Nonsense_Mutation p.S2366* 0.07 TCGA-56-8503-01 8 142166008 142166008 A G DENND3 Missense_Mutation p.T299A 0.10 tolerated(0.71) benign(0.001) TCGA-56-8503-01 8 144891822 144891822 C T SCRIB Missense_Mutation p.E533K 0.07 benign(0.117) TCGA-56-8503-01 8 17412575 17412575 T G SLC7A2 Intron 0.08 TCGA-56-8503-01 8 17417882 17417882 G A SLC7A2 Silent p.E488E 0.11 TCGA-56-8503-01 8 22056744 22056744 C G BMP1 Intron 0.17 TCGA-56-8503-01 8 27098612 27098612 C T STMN4 Missense_Mutation p.E120K 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-56-8503-01 8 2820823 2820823 G A CSMD1 Silent p.D3125D 0.12 TCGA-56-8503-01 8 37993209 37993209 C G ASH2L Silent p.V548V 0.09 TCGA-56-8503-01 9 130269586 130269586 G A FAM129B Silent p.Y593Y 0.12 TCGA-56-8503-01 9 138457279 138457279 G A PAEP Missense_Mutation p.E149K 0.10 tolerated(0.43) benign(0.145) TCGA-56-8503-01 9 139405615 139405615 G C NOTCH1 Missense_Mutation p.T859R 0.08 tolerated(0.08) benign(0.075) TCGA-56-8503-01 9 17786514 17786514 G A SH3GL2 Missense_Mutation p.C108Y 0.16 deleterious(0) possibly_damaging(0.896) TCGA-56-8503-01 9 94172351 94172351 C T NFIL3 Silent p.P222P 0.08 TCGA-56-8503-01 X 122319760 122319760 G T GRIA3 Missense_Mutation p.Q62H 0.20 deleterious(0.05) possibly_damaging(0.669) TCGA-56-8503-01 X 135496434 135496434 C G GPR112 Missense_Mutation p.F3051L 0.05 tolerated(0.17) benign(0.01) TCGA-56-8503-01 X 149639594 149639594 A T MAMLD1 Silent p.S558S 0.13 TCGA-56-8503-01 X 27998650 27998650 C A DCAF8L1 Missense_Mutation p.A268S 0.11 deleterious(0.04) benign(0.097) TCGA-56-8503-01 X 69510323 69510323 G T KIF4A Silent p.V5V 0.11 TCGA-56-8504-01 10 118897385 118897385 G C VAX1 Missense_Mutation p.N61K 0.44 tolerated(0.05) unknown(0) TCGA-56-8504-01 10 134942907 134942907 C T GPR123 Silent p.P525P 0.59 TCGA-56-8504-01 10 43659412 43659412 A C CSGALNACT2 Missense_Mutation p.E360A 0.19 deleterious(0.02) possibly_damaging(0.699) TCGA-56-8504-01 10 70051969 70051969 C A PBLD Missense_Mutation p.V104F 0.24 deleterious(0.05) benign(0.285) TCGA-56-8504-01 10 71021022 71021022 G C HKDC1 Missense_Mutation p.E782Q 0.45 tolerated(0.29) benign(0.2) TCGA-56-8504-01 10 83635505 83635505 C A NRG3 Missense_Mutation p.P137T 0.33 deleterious(0.01) benign(0.005) TCGA-56-8504-01 10 89653846 89653846 C A PTEN Missense_Mutation p.N48K 0.43 deleterious(0) probably_damaging(0.982) TCGA-56-8504-01 10 93604744 93604744 A C TNKS2 Missense_Mutation p.K710Q 0.37 deleterious(0) probably_damaging(0.996) TCGA-56-8504-01 10 99126257 99126257 C A RRP12 Missense_Mutation p.G1113C 0.39 deleterious(0.02) possibly_damaging(0.899) TCGA-56-8504-01 11 108788774 108788774 A G DDX10 Intron 0.50 TCGA-56-8504-01 11 113650763 113650763 C A CLDN25 Silent p.I82I 0.32 TCGA-56-8504-01 11 113650933 113650933 G T CLDN25 Missense_Mutation p.W139L 0.30 tolerated(0.07) benign(0.2) TCGA-56-8504-01 11 121035989 121035989 G T TECTA Silent p.V1760V 0.25 TCGA-56-8504-01 11 22833584 22833584 G T GAS2 3'UTR 0.16 TCGA-56-8504-01 11 5364072 5364072 G C OR51B5 Missense_Mutation p.S228C 0.26 deleterious(0) probably_damaging(0.987) TCGA-56-8504-01 11 56020313 56020313 C A OR5T3 Missense_Mutation p.P213H 0.42 deleterious(0) probably_damaging(0.994) TCGA-56-8504-01 11 56230798 56230798 A T OR5M9 Missense_Mutation p.V27E 0.19 deleterious(0.01) benign(0.258) TCGA-56-8504-01 11 5653690 5653690 C T TRIM34 Silent p.N43N 0.29 TCGA-56-8504-01 11 61067575 61067575 G A DDB1 3'UTR 0.32 TCGA-56-8504-01 11 6262923 6262923 G T CNGA4 Missense_Mutation p.A394S 0.26 tolerated(0.16) probably_damaging(0.984) TCGA-56-8504-01 11 64518012 64518012 G A PYGM Silent p.G671G 0.32 TCGA-56-8504-01 11 65810701 65810701 G T GAL3ST3 Nonsense_Mutation p.Y191* 0.19 TCGA-56-8504-01 11 67925408 67925408 C T SUV420H1 Missense_Mutation p.C802Y 0.17 tolerated(0.07) probably_damaging(0.984) TCGA-56-8504-01 11 6867280 6867280 C A OR10A5 Missense_Mutation p.R123S 0.23 deleterious(0.01) benign(0.1) TCGA-56-8504-01 11 7021117 7021117 A G ZNF214 Silent p.N599N 0.25 TCGA-56-8504-01 12 10339097 10339097 C A TMEM52B Silent p.R52R 0.63 TCGA-56-8504-01 12 10539585 10539585 T G KLRK1 Missense_Mutation p.N22T 0.64 tolerated(0.07) benign(0.054) TCGA-56-8504-01 12 105515999 105515999 G C KIAA1033 Missense_Mutation p.D257H 0.18 deleterious(0.01) probably_damaging(0.975) TCGA-56-8504-01 12 114793382 114793382 A G TBX5 Silent p.S504S 0.22 TCGA-56-8504-01 12 29449988 29449988 C G FAR2 Missense_Mutation p.Q134E 0.66 tolerated(0.13) benign(0.307) TCGA-56-8504-01 12 69115653 69115653 A T NUP107 Silent p.T448T 0.18 TCGA-56-8504-01 12 71533630 71533630 T C TSPAN8 Splice_Site p.X42_splice 0.11 TCGA-56-8504-01 12 7651485 7651485 C T CD163 Missense_Mutation p.D253N 0.22 deleterious(0) probably_damaging(1) TCGA-56-8504-01 12 76783582 76783582 C A OSBPL8 Missense_Mutation p.V399L 0.33 tolerated(0.3) probably_damaging(0.99) TCGA-56-8504-01 12 78400299 78400299 T A NAV3 Missense_Mutation p.S327R 0.11 deleterious(0) benign(0.28) TCGA-56-8504-01 12 78444610 78444610 G T NAV3 Missense_Mutation p.L733F 0.17 deleterious(0) probably_damaging(1) TCGA-56-8504-01 12 8078513 8078513 T C SLC2A3 Missense_Mutation p.D298G 0.67 tolerated(0.29) benign(0.02) TCGA-56-8504-01 12 81627218 81627218 G T ACSS3 Missense_Mutation p.G563C 0.08 deleterious(0) probably_damaging(0.999) TCGA-56-8504-01 13 32745203 32745203 G A FRY Silent p.Q649Q 0.37 TCGA-56-8504-01 13 34404104 34404104 A G RFC3 Missense_Mutation p.I175V 0.41 tolerated(0.25) benign(0.173) TCGA-56-8504-01 13 39264642 39264642 C A FREM2 Missense_Mutation p.T1054N 0.10 tolerated(0.41) benign(0.007) TCGA-56-8504-01 13 58207164 58207164 G C PCDH17 Missense_Mutation p.G162R 0.50 deleterious(0) probably_damaging(0.975) TCGA-56-8504-01 13 79190660 79190660 T G RNF219 Missense_Mutation p.Q412H 0.50 deleterious(0.01) benign(0.17) TCGA-56-8504-01 14 33201700 33201700 C T AKAP6 Missense_Mutation p.T1014M 0.12 tolerated(0.6) benign(0.012) TCGA-56-8504-01 14 54417481 54417481 C A BMP4 Missense_Mutation p.D166Y 0.60 deleterious(0.03) possibly_damaging(0.537) TCGA-56-8504-01 14 60212483 60212483 C G RTN1 Missense_Mutation p.V320L 0.61 tolerated(0.34) benign(0.172) TCGA-56-8504-01 14 67389516 67389516 C T GPHN Missense_Mutation p.P197L 0.60 deleterious_low_confidence(0.01) benign(0.004) TCGA-56-8504-01 14 79432731 79432731 C G NRXN3 Missense_Mutation p.A547G 0.66 tolerated(0.12) probably_damaging(0.91) TCGA-56-8504-01 14 86088074 86088075 - A FLRT2 Frame_Shift_Ins p.N73Kfs*4 0.46 TCGA-56-8504-01 15 22709215 22709215 G T AC116165.1 5'Flank 0.07 TCGA-56-8504-01 15 22848874 22848874 G A TUBGCP5 Splice_Site p.X308_splice 0.09 TCGA-56-8504-01 15 25326502 25326502 G A SNORD116-15 RNA 0.28 TCGA-56-8504-01 15 25475996 25475996 G T SNORD115-33 RNA 0.13 TCGA-56-8504-01 15 25488614 25488614 C A SNORD115-40 5'Flank 0.21 TCGA-56-8504-01 15 25488615 25488615 C A SNORD115-40 5'Flank 0.21 TCGA-56-8504-01 15 25969126 25969126 A T ATP10A Nonsense_Mutation p.L341* 0.29 TCGA-56-8504-01 15 34032130 34032130 C A RYR3 Missense_Mutation p.T2585K 0.18 benign(0.115) TCGA-56-8504-01 15 41827047 41827047 C A RPAP1 Missense_Mutation p.V210F 0.34 deleterious(0) possibly_damaging(0.55) TCGA-56-8504-01 15 48760147 48760147 C G FBN1 Missense_Mutation p.A1579P 0.28 benign(0) TCGA-56-8504-01 15 49436480 49436480 T A COPS2 Nonsense_Mutation p.K64* 0.17 TCGA-56-8504-01 15 74628278 74628278 C T CCDC33 Missense_Mutation p.H718Y 0.26 tolerated_low_confidence(0.27) benign(0.032) TCGA-56-8504-01 15 80412683 80412683 G T ZFAND6 5'UTR 0.33 TCGA-56-8504-01 15 83932728 83932728 G A BNC1 Silent p.D425D 0.28 TCGA-56-8504-01 15 84287047 84287047 A G SH3GL3 3'UTR 0.22 TCGA-56-8504-01 15 89398556 89398556 G T ACAN Missense_Mutation p.V914L 0.28 tolerated(0.61) benign(0.042) TCGA-56-8504-01 15 91483586 91483586 G A UNC45A Silent p.K190K 0.14 TCGA-56-8504-01 16 17353213 17353213 G T XYLT1 Missense_Mutation p.A182E 0.33 tolerated_low_confidence(0.1) benign(0.26) TCGA-56-8504-01 16 18828747 18828747 T C SMG1 Missense_Mutation p.T3314A 0.25 deleterious(0.01) probably_damaging(0.956) TCGA-56-8504-01 16 20043402 20043402 T A GPR139 Silent p.T239T 0.10 TCGA-56-8504-01 16 20559385 20559385 G A ACSM2B Missense_Mutation p.T366M 0.35 deleterious(0.02) possibly_damaging(0.733) TCGA-56-8504-01 16 23692347 23692347 C T PLK1 Silent p.F230F 0.24 TCGA-56-8504-01 16 2551011 2551011 G C TBC1D24 3'UTR 0.19 TCGA-56-8504-01 16 30456597 30456597 C A SEPHS2 Missense_Mutation p.G151V 0.10 probably_damaging(0.982) TCGA-56-8504-01 16 30764558 30764558 G C PHKG2 Missense_Mutation p.R111P 0.06 tolerated(0.3) possibly_damaging(0.875) TCGA-56-8504-01 16 3658568 3658568 G A SLX4 Missense_Mutation p.P133L 0.15 tolerated(0.26) benign(0.003) TCGA-56-8504-01 16 50134212 50134212 G T HEATR3 Silent p.V557V 0.09 TCGA-56-8504-01 16 67293554 67293554 A G SLC9A5 Missense_Mutation p.T569A 0.15 tolerated(0.14) benign(0.012) TCGA-56-8504-01 16 67644874 67644874 G A CTCF Missense_Mutation p.G47R 0.13 tolerated_low_confidence(0.12) benign(0.052) TCGA-56-8504-01 16 76569639 76569639 G T CNTNAP4 Missense_Mutation p.D912Y 0.23 deleterious(0) probably_damaging(0.992) TCGA-56-8504-01 16 83704536 83704536 A C CDH13 Missense_Mutation p.T462P 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-56-8504-01 16 9857339 9857339 G C GRIN2A Missense_Mutation p.S1354R 0.16 deleterious(0) probably_damaging(0.999) TCGA-56-8504-01 17 10204893 10204893 C A MYH13 Missense_Mutation p.G1932V 0.05 tolerated_low_confidence(0.08) benign(0.403) TCGA-56-8504-01 17 10357177 10357177 T A MYH4 Missense_Mutation p.E906V 0.55 deleterious(0) probably_damaging(0.998) TCGA-56-8504-01 17 16855860 16855860 G T TNFRSF13B Silent p.S33S 0.50 TCGA-56-8504-01 17 32483366 32483366 C G ASIC2 Missense_Mutation p.E62D 0.27 tolerated(0.83) benign(0.003) TCGA-56-8504-01 17 36489245 36489245 C T GPR179 Missense_Mutation p.M642I 0.30 tolerated(1) benign(0.001) TCGA-56-8504-01 17 37687466 37687466 T G CDK12 Missense_Mutation p.L1457R 0.29 benign(0.366) TCGA-56-8504-01 17 40939836 40939836 C T WNK4 Silent p.F594F 0.27 TCGA-56-8504-01 17 43246627 43246627 C G HEXIM2 Silent p.P104P 0.24 TCGA-56-8504-01 17 4623746 4623746 C T ARRB2 Missense_Mutation p.P375S 0.61 tolerated(0.22) benign(0.029) TCGA-56-8504-01 17 48153969 48153969 G T ITGA3 Missense_Mutation p.G616W 0.22 deleterious(0) probably_damaging(1) TCGA-56-8504-01 17 59067582 59067582 G T BCAS3 Missense_Mutation p.G491V 0.27 tolerated(0.48) benign(0.169) TCGA-56-8504-01 17 60062228 60062228 T C MED13 Splice_Site p.X826_splice 0.18 TCGA-56-8504-01 17 62121302 62121302 C A ERN1 3'UTR 0.35 TCGA-56-8504-01 17 64737802 64737802 G A PRKCA Missense_Mutation p.G450R 0.24 deleterious(0) probably_damaging(0.968) TCGA-56-8504-01 17 67133534 67133534 A G ABCA6 Silent p.D68D 0.30 TCGA-56-8504-01 17 7578454 7578454 G A TP53 Missense_Mutation p.A159V 0.57 deleterious(0) possibly_damaging(0.9) TCGA-56-8504-01 17 80048353 80048353 C A FASN Missense_Mutation p.A590S 0.43 deleterious(0.01) probably_damaging(1) TCGA-56-8504-01 18 14533162 14533162 G T POTEC Missense_Mutation p.A318E 0.06 tolerated(0.24) probably_damaging(0.992) TCGA-56-8504-01 18 34298405 34298405 T C FHOD3 Silent p.P873P 0.30 TCGA-56-8504-01 18 44560078 44560078 G T TCEB3B Missense_Mutation p.P520T 0.10 tolerated(1) benign(0.001) TCGA-56-8504-01 19 10602878 10602878 G A KEAP1 Missense_Mutation p.R234W 0.21 deleterious(0) probably_damaging(0.96) TCGA-56-8504-01 19 12969183 12969183 G T MAST1 Missense_Mutation p.S362I 0.06 tolerated(0.06) benign(0.001) TCGA-56-8504-01 19 2115591 2115591 C T AP3D1 Missense_Mutation p.V699M 0.18 tolerated(0.08) possibly_damaging(0.474) TCGA-56-8504-01 19 36051792 36051792 C A ATP4A Missense_Mutation p.G155C 0.11 tolerated(0.06) probably_damaging(0.994) TCGA-56-8504-01 19 43023236 43023236 C T CEACAM1 Silent p.E370E 0.14 TCGA-56-8504-01 19 4318493 4318493 C - FSD1 Frame_Shift_Del p.P318Qfs*33 0.27 TCGA-56-8504-01 19 46388517 46388517 A T IRF2BP1 Silent p.S172S 0.31 TCGA-56-8504-01 19 51530806 51530806 C G KLK11 5'UTR 0.13 TCGA-56-8504-01 19 51917057 51917057 C A SIGLEC10 Missense_Mutation p.R577I 0.34 tolerated(0.06) benign(0.342) TCGA-56-8504-01 19 53571572 53571572 C A ZNF160 Missense_Mutation p.G739C 0.24 deleterious(0) probably_damaging(0.999) TCGA-56-8504-01 19 54257316 54257317 AG T MIR527 RNA 0.10 TCGA-56-8504-01 19 54327194 54327194 G A NLRP12 Missense_Mutation p.R79W 0.31 tolerated(0.05) benign(0.126) TCGA-56-8504-01 19 55143979 55143979 G T LILRB1 Silent p.L242L 0.21 TCGA-56-8504-01 19 55493570 55493570 C A NLRP2 Missense_Mutation p.F168L 0.15 tolerated(0.39) benign(0.095) TCGA-56-8504-01 19 56047521 56047521 C A SBK2 Silent p.T47T 0.08 TCGA-56-8504-01 19 57326106 57326106 A T PEG3 Missense_Mutation p.I1235N 0.19 deleterious(0.02) probably_damaging(0.985) TCGA-56-8504-01 19 57327956 57327956 C T PEG3 Silent p.Q618Q 0.15 TCGA-56-8504-01 19 58578396 58578396 C T ZNF135 Missense_Mutation p.P206S 0.14 tolerated(0.16) probably_damaging(0.91) TCGA-56-8504-01 19 59021357 59021357 G C SLC27A5 Missense_Mutation p.A305G 0.31 deleterious(0) probably_damaging(0.949) TCGA-56-8504-01 19 9406890 9406890 C T ZNF699 Missense_Mutation p.G397E 0.18 deleterious(0.04) probably_damaging(1) TCGA-56-8504-01 1 113456474 113456474 G A SLC16A1 3'UTR 0.12 TCGA-56-8504-01 1 115223059 115223059 T C AMPD1 Silent p.R229R 0.22 TCGA-56-8504-01 1 156268663 156268663 T C VHLL Silent p.T106T 0.26 TCGA-56-8504-01 1 157516988 157516988 C T FCRL5 Splice_Site p.X18_splice 0.25 TCGA-56-8504-01 1 157648385 157648385 C A FCRL3 3'UTR 0.19 TCGA-56-8504-01 1 160535323 160535323 C A CD84 Missense_Mutation p.A87S 0.22 deleterious(0) benign(0.026) TCGA-56-8504-01 1 161187791 161187791 C A FCER1G Missense_Mutation p.P22H 0.23 deleterious(0.05) probably_damaging(0.989) TCGA-56-8504-01 1 186072704 186072704 T G HMCN1 Silent p.P3558P 0.24 TCGA-56-8504-01 1 186158651 186158651 C G HMCN1 Missense_Mutation p.L5517V 0.17 probably_damaging(0.931) TCGA-56-8504-01 1 208390965 208390965 C A PLXNA2 Missense_Mutation p.Q101H 0.15 tolerated(0.07) probably_damaging(0.949) TCGA-56-8504-01 1 222696056 222696056 C A HHIPL2 Missense_Mutation p.A688S 0.23 tolerated_low_confidence(0.42) benign(0.01) TCGA-56-8504-01 1 240601466 240601466 T A FMN2 Missense_Mutation p.F1672L 0.23 probably_damaging(0.976) TCGA-56-8504-01 1 247614654 247614654 C T OR2B11 Missense_Mutation p.V211M 0.31 deleterious(0.01) possibly_damaging(0.656) TCGA-56-8504-01 1 248367060 248367060 G T OR2M3 Nonsense_Mutation p.G231* 0.26 TCGA-56-8504-01 1 248813853 248813853 C G OR2T27 Missense_Mutation p.E111D 0.17 deleterious(0.01) possibly_damaging(0.566) TCGA-56-8504-01 1 41976240 41976240 C A HIVEP3 Missense_Mutation p.R2368L 0.67 probably_damaging(0.995) TCGA-56-8504-01 1 65243331 65243331 A G RAVER2 Silent p.E114E 0.53 TCGA-56-8504-01 1 71418708 71418708 C A PTGER3 Missense_Mutation p.R380M 0.48 tolerated(0.07) benign(0.001) TCGA-56-8504-01 1 94998671 94998671 T C F3 Missense_Mutation p.Y189C 0.52 deleterious(0) probably_damaging(1) TCGA-56-8504-01 20 19970818 19970818 C T RIN2 Missense_Mutation p.P693L 0.58 tolerated(0.4) benign(0.161) TCGA-56-8504-01 20 47295917 47295917 G T PREX1 Missense_Mutation p.L524I 0.06 deleterious(0) possibly_damaging(0.701) TCGA-56-8504-01 20 47295918 47295918 G T PREX1 Missense_Mutation p.S523R 0.06 deleterious(0) possibly_damaging(0.602) TCGA-56-8504-01 20 50408580 50408580 C - SALL4 Frame_Shift_Del p.D148Mfs*8 0.34 TCGA-56-8504-01 21 22881210 22881210 G T NCAM2 Missense_Mutation p.G706C 0.44 deleterious(0) probably_damaging(0.989) TCGA-56-8504-01 22 24040440 24040440 T A RGL4 Silent p.A434A 0.09 TCGA-56-8504-01 22 24106878 24106878 T A C22orf15 Missense_Mutation p.D101E 0.46 tolerated(0.45) benign(0.057) TCGA-56-8504-01 22 24917964 24917964 C A UPB1 Missense_Mutation p.P295Q 0.16 deleterious(0.01) benign(0.055) TCGA-56-8504-01 22 50615928 50615928 G T PANX2 Missense_Mutation p.A263S 0.22 tolerated(0.87) benign(0.142) TCGA-56-8504-01 2 109383132 109383132 A G RANBP2 Missense_Mutation p.D2046G 0.28 deleterious(0) probably_damaging(0.983) TCGA-56-8504-01 2 113300178 113300178 A T POLR1B Missense_Mutation p.Q36L 0.23 tolerated(0.07) benign(0.305) TCGA-56-8504-01 2 11955300 11955300 G - LPIN1 Frame_Shift_Del p.G829Afs*11 0.28 TCGA-56-8504-01 2 128339559 128339559 G C MYO7B Missense_Mutation p.A392P 0.20 tolerated(0.13) possibly_damaging(0.685) TCGA-56-8504-01 2 130832400 130832400 C A POTEF Missense_Mutation p.G882V 0.09 deleterious_low_confidence(0) probably_damaging(1) TCGA-56-8504-01 2 130952030 130952030 A T TUBA3E Missense_Mutation p.C129S 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.551) TCGA-56-8504-01 2 132021673 132021673 G T POTEE Missense_Mutation p.G882V 0.09 deleterious_low_confidence(0) probably_damaging(1) TCGA-56-8504-01 2 141459837 141459837 C G LRP1B Missense_Mutation p.A2059P 0.24 possibly_damaging(0.665) TCGA-56-8504-01 2 154801095 154801095 A T GALNT13 Missense_Mutation p.S29C 0.25 deleterious(0) possibly_damaging(0.541) TCGA-56-8504-01 2 168114667 168114667 C A XIRP2 3'UTR 0.33 TCGA-56-8504-01 2 171248925 171248925 G A MYO3B Missense_Mutation p.D571N 0.18 deleterious(0.04) benign(0.052) TCGA-56-8504-01 2 179536984 179536984 G T TTN Silent p.V11647V 0.47 TCGA-56-8504-01 2 179552889 179552889 T C TTN Missense_Mutation p.R10754G 0.18 TCGA-56-8504-01 2 179587200 179587200 G T TTN Silent p.L7438L 0.15 TCGA-56-8504-01 2 179597230 179597230 A T TTN Missense_Mutation p.Y5520N 0.48 TCGA-56-8504-01 2 207172222 207172224 TAG AA ZDBF2 Frame_Shift_Del p.R991Kfs*12 0.30 TCGA-56-8504-01 2 218759777 218759777 C A TNS1 Silent p.L57L 0.35 TCGA-56-8504-01 2 220424212 220424212 T A OBSL1 Silent p.P987P 0.37 TCGA-56-8504-01 2 228109062 228109062 G C COL4A3 Silent p.T87T 0.40 TCGA-56-8504-01 2 238628188 238628188 G A LRRFIP1 Missense_Mutation p.R59H 0.33 tolerated(0.25) benign(0.005) TCGA-56-8504-01 2 23977516 23977516 C A ATAD2B Splice_Site p.X1402_splice 0.28 TCGA-56-8504-01 2 25016294 25016294 A G CENPO 5'UTR 0.30 TCGA-56-8504-01 2 3743353 3743353 C A ALLC Missense_Mutation p.D186E 0.43 tolerated(0.06) benign(0.142) TCGA-56-8504-01 2 43783564 43783593 AAGGATGACGGTAGAGCATCCTGCCAGATT - THADA In_Frame_Del p.I856_L865del 0.26 TCGA-56-8504-01 2 65245298 65245298 C A SLC1A4 Silent p.T376T 0.23 TCGA-56-8504-01 2 69271892 69271892 C G ANTXR1 Silent p.S81S 0.22 TCGA-56-8504-01 2 74140617 74140617 G T ACTG2 Missense_Mutation p.V153F 0.21 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-56-8504-01 2 80831274 80831274 G T CTNNA2 Missense_Mutation p.M755I 0.21 tolerated(0.06) benign(0.053) TCGA-56-8504-01 2 89309557 89309557 T G IGKV1-9 Silent p.T91T 0.12 TCGA-56-8504-01 2 95847731 95847731 G A ZNF2 Silent p.T386T 0.07 TCGA-56-8504-01 3 100447669 100447669 G A TFG Missense_Mutation p.E128K 0.21 deleterious(0.02) possibly_damaging(0.526) TCGA-56-8504-01 3 113085144 113085144 A G WDR52 Silent p.V819V 0.17 TCGA-56-8504-01 3 121342003 121342003 T G FBXO40 Missense_Mutation p.L576R 0.20 deleterious(0) probably_damaging(1) TCGA-56-8504-01 3 121415779 121415779 T C GOLGB1 Silent p.K1197K 0.21 TCGA-56-8504-01 3 125313517 125313517 C G OSBPL11 Missense_Mutation p.S43T 0.20 tolerated_low_confidence(0.12) benign(0.014) TCGA-56-8504-01 3 125313518 125313518 T A OSBPL11 Missense_Mutation p.S43C 0.20 tolerated_low_confidence(0.07) benign(0.293) TCGA-56-8504-01 3 125648444 125648444 T C ALG1L Intron 0.13 TCGA-56-8504-01 3 126153099 126153099 G A CCDC37 Silent p.L501L 0.32 TCGA-56-8504-01 3 12858353 12858353 C G CAND2 Missense_Mutation p.P641R 0.40 tolerated(0.06) probably_damaging(0.999) TCGA-56-8504-01 3 130095415 130095415 C T COL6A5 Missense_Mutation p.P135S 0.19 deleterious(0) probably_damaging(0.999) TCGA-56-8504-01 3 137890502 137890502 T C DBR1 Missense_Mutation p.I126V 0.21 deleterious(0.04) probably_damaging(0.972) TCGA-56-8504-01 3 138178035 138178035 C A ESYT3 Silent p.I196I 0.22 TCGA-56-8504-01 3 140401762 140401762 A T TRIM42 Missense_Mutation p.H267L 0.11 deleterious(0) probably_damaging(0.999) TCGA-56-8504-01 3 141161743 141161743 C T ZBTB38 Silent p.I171I 0.11 TCGA-56-8504-01 3 1414561 1414561 C A CNTN6 Missense_Mutation p.H570N 0.28 tolerated(0.27) benign(0.001) TCGA-56-8504-01 3 147130454 147130454 C A ZIC1 Missense_Mutation p.R378S 0.20 deleterious(0) probably_damaging(0.997) TCGA-56-8504-01 3 156395578 156395578 A G TIPARP Missense_Mutation p.E31G 0.20 tolerated_low_confidence(0.39) benign(0) TCGA-56-8504-01 3 173998562 173998562 G T NLGN1 Silent p.T647T 0.17 TCGA-56-8504-01 3 189607142 189607142 C T TP63 Silent p.G507G 0.08 TCGA-56-8504-01 3 193082069 193082069 C A ATP13A5 Nonsense_Mutation p.E22* 0.09 TCGA-56-8504-01 3 197238873 197238873 T A BDH1 Missense_Mutation p.T309S 0.25 tolerated(0.62) benign(0.003) TCGA-56-8504-01 3 197348705 197348705 T C AC024560.3 RNA 0.24 TCGA-56-8504-01 3 27393976 27393976 C A NEK10 Missense_Mutation p.V38F 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.626) TCGA-56-8504-01 3 2908480 2908480 G T CNTN4 Missense_Mutation p.D167Y 0.36 deleterious(0) probably_damaging(0.996) TCGA-56-8504-01 3 39453242 39453242 C G RPSA Missense_Mutation p.L201V 0.32 deleterious(0.02) benign(0.018) TCGA-56-8504-01 3 50615000 50615000 C G HEMK1 Missense_Mutation p.Q204E 0.33 tolerated(0.34) benign(0.008) TCGA-56-8504-01 3 54959149 54959149 A G LRTM1 Missense_Mutation p.V34A 0.40 tolerated(0.18) possibly_damaging(0.542) TCGA-56-8504-01 3 57644858 57644858 T A DENND6A Missense_Mutation p.Q250L 0.47 tolerated(0.06) benign(0.276) TCGA-56-8504-01 3 9106196 9106196 T C SRGAP3 Missense_Mutation p.K186E 0.27 deleterious(0.01) benign(0.062) TCGA-56-8504-01 3 9908918 9908918 G T CIDEC Missense_Mutation p.S216Y 0.28 deleterious(0) probably_damaging(0.983) TCGA-56-8504-01 4 16510189 16510189 G T LDB2 Missense_Mutation p.A287D 0.35 tolerated(0.09) benign(0.322) TCGA-56-8504-01 4 187115690 187115690 A C CYP4V2 Missense_Mutation p.Y84S 0.18 tolerated(0.07) benign(0.128) TCGA-56-8504-01 4 188924725 188924725 G T ZFP42 Missense_Mutation p.R255L 0.46 deleterious(0) probably_damaging(0.999) TCGA-56-8504-01 4 23816055 23816055 G A PPARGC1A Nonsense_Mutation p.Q351* 0.42 TCGA-56-8504-01 5 112888952 112888952 A G YTHDC2 Missense_Mutation p.D588G 0.36 deleterious(0.01) possibly_damaging(0.696) TCGA-56-8504-01 5 113740487 113740487 C A KCNN2 Missense_Mutation p.T312N 0.39 deleterious(0) probably_damaging(0.98) TCGA-56-8504-01 5 114860066 114860066 C T FEM1C Missense_Mutation p.R598K 0.41 tolerated(1) benign(0) TCGA-56-8504-01 5 123982604 123982604 G A ZNF608 Missense_Mutation p.S1158F 0.36 deleterious(0) possibly_damaging(0.605) TCGA-56-8504-01 5 140559121 140559121 C A PCDHB8 Silent p.A502A 0.27 TCGA-56-8504-01 5 140764187 140764187 G T PCDHGA7 Missense_Mutation p.G574V 0.41 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-56-8504-01 5 1409959 1409959 A G SLC6A3 Silent p.G425G 0.20 TCGA-56-8504-01 5 141694689 141694689 G - SPRY4 Frame_Shift_Del p.R19Gfs*16 0.34 TCGA-56-8504-01 5 15937262 15937262 C T FBXL7 Silent p.C481C 0.14 TCGA-56-8504-01 5 179222594 179222594 C A LTC4S Missense_Mutation p.S23Y 0.47 deleterious(0) possibly_damaging(0.885) TCGA-56-8504-01 5 19591303 19591304 - A CDH18 Frame_Shift_Ins p.G288Wfs*7 0.16 TCGA-56-8504-01 5 24488011 24488011 C A CDH10 Missense_Mutation p.V710F 0.25 tolerated(0.46) probably_damaging(0.994) TCGA-56-8504-01 5 31323365 31323365 A G CDH6 Missense_Mutation p.K775E 0.22 deleterious(0.01) benign(0.396) TCGA-56-8504-01 5 45645473 45645473 C T HCN1 Nonsense_Mutation p.W221* 0.15 TCGA-56-8504-01 5 64838675 64838675 G A CENPK Missense_Mutation p.T81I 0.24 tolerated(1) benign(0) TCGA-56-8504-01 6 129468186 129468186 C G LAMA2 Missense_Mutation p.A301G 0.36 tolerated(0.12) benign(0.112) TCGA-56-8504-01 6 139164185 139164185 T C ECT2L Missense_Mutation p.Y138H 0.52 deleterious(0.05) benign(0.093) TCGA-56-8504-01 6 147556421 147556421 A G STXBP5 Missense_Mutation p.H95R 0.43 deleterious(0) possibly_damaging(0.791) TCGA-56-8504-01 6 25779509 25779509 C G SLC17A4 3'UTR 0.52 TCGA-56-8504-01 6 25973460 25973460 G A TRIM38 Missense_Mutation p.C274Y 0.35 tolerated(0.11) benign(0.062) TCGA-56-8504-01 6 350830 350830 G T DUSP22 Nonsense_Mutation p.G173* 0.08 TCGA-56-8504-01 6 50807967 50807967 C A TFAP2B Missense_Mutation p.P347T 0.43 deleterious(0.03) probably_damaging(0.922) TCGA-56-8504-01 6 66205079 66205079 G C EYS Silent p.P75P 0.27 TCGA-56-8504-01 6 76713611 76713611 A G IMPG1 Missense_Mutation p.S398P 0.19 tolerated(1) benign(0) TCGA-56-8504-01 7 100201063 100201063 C T PCOLCE Silent p.L36L 0.20 TCGA-56-8504-01 7 105732331 105732331 T G SYPL1 Missense_Mutation p.K234Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-56-8504-01 7 107254169 107254169 C G BCAP29 Missense_Mutation p.S254C 0.24 tolerated_low_confidence(0.06) benign(0.094) TCGA-56-8504-01 7 114304449 114304449 G T FOXP2 Missense_Mutation p.S679I 0.22 deleterious(0) benign(0.203) TCGA-56-8504-01 7 128485078 128485078 G T FLNC Nonsense_Mutation p.E1187* 0.19 TCGA-56-8504-01 7 138602442 138602442 C A KIAA1549 Missense_Mutation p.A644S 0.35 tolerated(0.37) benign(0.036) TCGA-56-8504-01 7 142045793 142045793 G A TRBV4-2 Silent p.L107L 0.08 TCGA-56-8504-01 7 143826320 143826320 C T OR2A14 Silent p.L39L 0.23 TCGA-56-8504-01 7 147259295 147259295 G C CNTNAP2 Missense_Mutation p.D615H 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-56-8504-01 7 148951081 148951081 C T ZNF212 Missense_Mutation p.P355S 0.17 tolerated(0.15) benign(0.062) TCGA-56-8504-01 7 150709502 150709502 T A NOS3 Silent p.T1016T 0.35 TCGA-56-8504-01 7 157475460 157475460 C A PTPRN2 Missense_Mutation p.G653V 0.25 deleterious(0) possibly_damaging(0.729) TCGA-56-8504-01 7 158557480 158557480 C A ESYT2 Missense_Mutation p.G378V 0.32 deleterious(0) probably_damaging(0.998) TCGA-56-8504-01 7 27196018 27196018 C A HOXA7 Silent p.S49S 0.41 TCGA-56-8504-01 7 39503887 39503887 A T POU6F2 Missense_Mutation p.R560W 0.35 deleterious(0) unknown(0) TCGA-56-8504-01 7 44189395 44189395 A T GCK Missense_Mutation p.Y216N 0.34 deleterious(0) probably_damaging(0.999) TCGA-56-8504-01 7 57510016 57510016 C A ZNF716 Missense_Mutation p.P8T 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.544) TCGA-56-8504-01 7 64167607 64167607 T C ZNF107 Missense_Mutation p.F309L 0.45 deleterious(0) probably_damaging(0.991) TCGA-56-8504-01 7 94167177 94167177 G T CASD1 Nonsense_Mutation p.G413* 0.33 TCGA-56-8504-01 7 98552757 98552757 G C TRRAP Missense_Mutation p.A1916P 0.43 benign(0.071) TCGA-56-8504-01 7 98985854 98985854 C A ARPC1B Missense_Mutation p.S121Y 0.23 deleterious(0) probably_damaging(0.995) TCGA-56-8504-01 7 99754614 99754614 G A C7orf43 Missense_Mutation p.H283Y 0.15 deleterious(0) benign(0.291) TCGA-56-8504-01 8 105405014 105405014 G T DPYS Silent p.R481R 0.09 TCGA-56-8504-01 8 113347581 113347581 C A CSMD3 Missense_Mutation p.G2381V 0.19 deleterious(0) probably_damaging(0.997) TCGA-56-8504-01 8 113694694 113694694 C T CSMD3 Missense_Mutation p.S885N 0.17 tolerated(0.73) probably_damaging(0.999) TCGA-56-8504-01 8 12870270 12870270 G C KIAA1456 Missense_Mutation p.E78Q 0.46 deleterious(0) probably_damaging(0.984) TCGA-56-8504-01 8 133816079 133816079 G - PHF20L1 Frame_Shift_Del p.V175Sfs*48 0.27 TCGA-56-8504-01 8 135614714 135614714 C G ZFAT Missense_Mutation p.E416D 0.20 deleterious(0.03) probably_damaging(0.994) TCGA-56-8504-01 8 139601540 139601540 A G COL22A1 Missense_Mutation p.F1613L 0.23 unknown(0) TCGA-56-8504-01 8 143957673 143957673 G C CYP11B1 Missense_Mutation p.A313G 0.46 deleterious(0.02) benign(0.443) TCGA-56-8504-01 8 143961219 143961219 C T CYP11B1 Missense_Mutation p.R4K 0.41 deleterious(0.03) benign(0.297) TCGA-56-8504-01 8 19809381 19809381 T A LPL Silent p.A117A 0.28 TCGA-56-8504-01 8 38250376 38250376 T C LETM2 Missense_Mutation p.Y75H 0.19 deleterious(0) possibly_damaging(0.796) TCGA-56-8504-01 8 59409500 59409500 C T CYP7A1 Missense_Mutation p.D191N 0.44 tolerated(0.16) benign(0.072) TCGA-56-8504-01 8 75761360 75761360 T G PI15 Missense_Mutation p.W217G 0.38 deleterious(0) probably_damaging(0.994) TCGA-56-8504-01 8 77618532 77618532 C A ZFHX4 Missense_Mutation p.Q737K 0.50 benign(0.092) TCGA-56-8504-01 8 87242134 87242135 - A SLC7A13 Frame_Shift_Ins p.P125Sfs*10 0.20 TCGA-56-8504-01 8 87242459 87242459 C G SLC7A13 Missense_Mutation p.W16C 0.36 tolerated(0.1) benign(0.001) TCGA-56-8504-01 8 89068356 89068356 C A MMP16 Missense_Mutation p.R458I 0.25 deleterious(0) probably_damaging(1) TCGA-56-8504-01 8 95504066 95504066 C A KIAA1429 Missense_Mutation p.G1627V 0.42 deleterious(0.03) probably_damaging(1) TCGA-56-8504-01 9 117168688 117168688 C T DFNB31 Missense_Mutation p.R728H 0.16 deleterious(0) possibly_damaging(0.901) TCGA-56-8504-01 9 125391276 125391276 A T OR1B1 Missense_Mutation p.L180H 0.10 deleterious(0.03) probably_damaging(0.946) TCGA-56-8504-01 9 125551269 125551269 G A OR5C1 Missense_Mutation p.G20S 0.14 deleterious(0) probably_damaging(0.999) TCGA-56-8504-01 9 129870542 129870542 G - ANGPTL2 Frame_Shift_Del p.Q157Sfs*7 0.19 TCGA-56-8504-01 9 135553547 135553547 C T GTF3C4 Missense_Mutation p.L181F 0.15 tolerated(0.09) possibly_damaging(0.883) TCGA-56-8504-01 9 135926201 135926201 G T GTF3C5 Nonsense_Mutation p.E202* 0.16 TCGA-56-8504-01 9 140127136 140127136 C T SLC34A3 Silent p.S95S 0.09 TCGA-56-8504-01 9 27455388 27455388 T C MOB3B Missense_Mutation p.E54G 0.31 deleterious(0) probably_damaging(0.998) TCGA-56-8504-01 9 34689665 34689665 T A CCL19 3'UTR 0.14 TCGA-56-8504-01 9 79118196 79118196 T C GCNT1 Missense_Mutation p.L300P 0.14 deleterious(0) probably_damaging(1) TCGA-56-8504-01 9 85615399 85615399 T A RASEF Missense_Mutation p.E508D 0.10 tolerated(0.24) benign(0.07) TCGA-56-8504-01 9 90499556 90499556 C A SPATA31E1 Missense_Mutation p.L139I 0.12 deleterious(0.02) probably_damaging(0.958) TCGA-56-8504-01 9 95773494 95773494 A G FGD3 Splice_Site p.X326_splice 0.30 TCGA-56-8504-01 X 101395824 101395824 A T TCEAL6 Silent p.G160G 0.44 TCGA-56-8504-01 X 102864472 102864472 T A TCEAL3 Silent p.G160G 0.11 TCGA-56-8504-01 X 109764615 109764615 G A TDGF1P3 RNA 0.38 TCGA-56-8504-01 X 16846298 16846298 T A TXLNG Missense_Mutation p.L194M 0.11 deleterious(0) probably_damaging(0.998) TCGA-56-8504-01 X 24521615 24521615 T C PDK3 Silent p.L164L 0.73 TCGA-56-8504-01 X 30260843 30260843 G A MAGEB4 Silent p.R197R 0.52 TCGA-56-8504-01 X 47272914 47272914 G T ZNF157 Missense_Mutation p.R481L 0.46 tolerated(0.38) benign(0.023) TCGA-56-8504-01 X 48920009 48920009 C T CCDC120 Silent p.F20F 0.56 TCGA-56-8504-01 X 63615295 63615295 C G MTMR8 5'UTR 0.57 TCGA-56-8504-01 X 64951812 64951812 G T MSN Missense_Mutation p.A222S 0.44 deleterious(0.05) possibly_damaging(0.868) TCGA-56-8504-01 X 65413477 65413477 C A HEPH Missense_Mutation p.L510M 0.42 tolerated(0.05) possibly_damaging(0.513) TCGA-56-8504-01 X 72667155 72667155 G A CDX4 Silent p.G22G 0.09 TCGA-56-8504-01 X 91873751 91873751 G T PCDH11X Missense_Mutation p.A1286S 0.29 tolerated_low_confidence(0.34) benign(0.014) TCGA-56-8622-01 10 1088626 1088626 C T IDI1 Silent p.V161V 0.06 TCGA-56-8622-01 10 11291136 11291136 G A CELF2 Missense_Mutation p.M125I 0.25 deleterious(0.01) probably_damaging(0.935) TCGA-56-8622-01 10 119043622 119043622 A G PDZD8 Silent p.Y874Y 0.24 TCGA-56-8622-01 10 123719091 123719091 T C NSMCE4A Silent p.E336E 0.17 TCGA-56-8622-01 10 134014347 134014347 G A DPYSL4 Missense_Mutation p.G324R 0.22 deleterious(0) probably_damaging(1) TCGA-56-8622-01 10 134660578 134660578 G T TTC40 Missense_Mutation p.A2042E 0.20 deleterious(0) possibly_damaging(0.882) TCGA-56-8622-01 10 25888203 25888203 G T GPR158 Nonstop_Mutation p.*1216Yext*16 0.17 TCGA-56-8622-01 10 26313002 26313002 T G MYO3A Missense_Mutation p.N261K 0.17 deleterious(0) possibly_damaging(0.491) TCGA-56-8622-01 10 26313003 26313003 G T MYO3A Missense_Mutation p.D262Y 0.19 deleterious(0.01) possibly_damaging(0.619) TCGA-56-8622-01 10 46968681 46968681 G T SYT15 Silent p.G85G 0.15 TCGA-56-8622-01 10 5682763 5682763 C G ASB13 Missense_Mutation p.R247T 0.16 deleterious(0) probably_damaging(0.975) TCGA-56-8622-01 10 61007261 61007261 A G FAM13C 3'UTR 0.28 TCGA-56-8622-01 10 95326547 95326547 C T FFAR4 Missense_Mutation p.R24C 0.14 tolerated(0.17) benign(0.009) TCGA-56-8622-01 11 118209880 118209880 C T CD3D Silent p.K171K 0.23 TCGA-56-8622-01 11 122526747 122526747 G T UBASH3B 5'UTR 0.21 TCGA-56-8622-01 11 126294481 126294481 G T KIRREL3 Missense_Mutation p.H777Q 0.16 deleterious(0.02) probably_damaging(0.995) TCGA-56-8622-01 11 1266012 1266012 C T MUC5B Silent p.I2634I 0.08 TCGA-56-8622-01 11 1492598 1492598 T C MOB2 Silent p.P139P 0.21 TCGA-56-8622-01 11 17098782 17098782 C T RPS13 Silent p.L28L 0.05 TCGA-56-8622-01 11 27521029 27521029 G C LIN7C Missense_Mutation p.F105L 0.22 deleterious(0.03) benign(0.43) TCGA-56-8622-01 11 30900149 30900149 C A DCDC1 Silent p.L1778L 0.09 TCGA-56-8622-01 11 45970499 45970499 T A PHF21A Splice_Site p.X409_splice 0.29 TCGA-56-8622-01 11 48238935 48238935 A G OR4B1 Missense_Mutation p.M192V 0.21 tolerated(1) benign(0.001) TCGA-56-8622-01 11 4936864 4936864 G A OR51G2 Silent p.S10S 0.15 TCGA-56-8622-01 11 51515514 51515514 A G OR4C46 Missense_Mutation p.N78S 0.21 deleterious_low_confidence(0) benign(0.01) TCGA-56-8622-01 11 55322365 55322365 G T OR4C15 Missense_Mutation p.G195C 0.19 tolerated_low_confidence(0.12) benign(0.069) TCGA-56-8622-01 11 5775932 5775932 G T OR52N4 5'UTR 0.30 TCGA-56-8622-01 11 6008108 6008108 A T OR52L1 Missense_Mutation p.L18H 0.26 tolerated(0.21) possibly_damaging(0.717) TCGA-56-8622-01 11 60559781 60559781 C G MS4A10 Missense_Mutation p.S116C 0.15 tolerated(0.07) possibly_damaging(0.886) TCGA-56-8622-01 11 62782207 62782207 C A SLC22A8 Missense_Mutation p.R75L 0.17 deleterious(0.03) possibly_damaging(0.866) TCGA-56-8622-01 11 7439260 7439260 A G SYT9 Missense_Mutation p.N413S 0.19 tolerated(0.12) probably_damaging(0.995) TCGA-56-8622-01 11 9452503 9452503 C A IPO7 Missense_Mutation p.L612M 0.25 deleterious(0.02) probably_damaging(0.968) TCGA-56-8622-01 11 95512037 95512037 A C FAM76B Silent p.L259L 0.29 TCGA-56-8622-01 12 102056192 102056192 G C MYBPC1 Missense_Mutation p.D672H 0.07 deleterious(0) possibly_damaging(0.89) TCGA-56-8622-01 12 102117104 102117104 G T CHPT1 Silent p.V313V 0.30 TCGA-56-8622-01 12 113544910 113544910 C A RASAL1 Missense_Mutation p.G551V 0.18 tolerated(0.14) benign(0.018) TCGA-56-8622-01 12 113544911 113544911 C A RASAL1 Missense_Mutation p.G551W 0.18 deleterious(0.01) possibly_damaging(0.819) TCGA-56-8622-01 12 123201000 123201000 A G HCAR3 Silent p.F95F 0.25 TCGA-56-8622-01 12 125834853 125834853 T A TMEM132B Missense_Mutation p.L303Q 0.24 deleterious(0) probably_damaging(0.984) TCGA-56-8622-01 12 132329908 132329908 G T MMP17 Missense_Mutation p.R373L 0.22 deleterious(0) probably_damaging(0.983) TCGA-56-8622-01 12 2113589 2113589 G C DCP1B Silent p.A3A 0.12 TCGA-56-8622-01 12 21472429 21472429 G T SLCO1A2 Intron 0.19 TCGA-56-8622-01 12 22778079 22778079 G T ETNK1 5'UTR 0.32 TCGA-56-8622-01 12 32832285 32832285 T A DNM1L 5'UTR 0.20 TCGA-56-8622-01 12 42523651 42523651 C A GXYLT1 Missense_Mutation p.C75F 0.11 tolerated_low_confidence(0.43) benign(0.006) TCGA-56-8622-01 12 49176417 49176417 G A ADCY6 Silent p.L267L 0.31 TCGA-56-8622-01 12 49392070 49392070 G A DDN Missense_Mutation p.R197W 0.07 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-56-8622-01 12 50190853 50190853 G C NCKAP5L Missense_Mutation p.L264V 0.33 tolerated_low_confidence(0.72) benign(0.001) TCGA-56-8622-01 12 53240020 53240020 C T KRT78 Silent p.L239L 0.16 TCGA-56-8622-01 12 55795200 55795200 A G OR6C65 Silent p.K296K 0.24 TCGA-56-8622-01 12 64519778 64519778 T C SRGAP1 Missense_Mutation p.I749T 0.23 tolerated(0.1) possibly_damaging(0.61) TCGA-56-8622-01 12 7060822 7060822 G A PTPN6 Missense_Mutation p.G20D 0.22 tolerated(0.45) benign(0.077) TCGA-56-8622-01 12 7080023 7080023 T C EMG1 5'UTR 0.25 TCGA-56-8622-01 12 7301713 7301713 C A CLSTN3 Missense_Mutation p.P665T 0.18 tolerated(0.89) benign(0.008) TCGA-56-8622-01 12 78531141 78531141 A G NAV3 Silent p.E1542E 0.25 TCGA-56-8622-01 13 26789244 26789244 T A RNF6 Missense_Mutation p.T259S 0.21 tolerated(0.39) benign(0.007) TCGA-56-8622-01 13 49281015 49281015 G A CYSLTR2 Missense_Mutation p.G21D 0.19 tolerated(0.49) benign(0.002) TCGA-56-8622-01 13 86369267 86369267 A C SLITRK6 Silent p.P459P 0.32 TCGA-56-8622-01 13 99337131 99337131 G T SLC15A1 Silent p.V658V 0.14 TCGA-56-8622-01 14 21878108 21878109 - GG CHD8 Frame_Shift_Ins p.Y756Pfs*9 0.24 TCGA-56-8622-01 14 22111134 22111134 A G TRAV1-2 5'UTR 0.26 TCGA-56-8622-01 14 22133512 22133512 C - OR4E2 Frame_Shift_Del p.H73Tfs*15 0.24 TCGA-56-8622-01 14 23896957 23896957 G A MYH7 Silent p.A575A 0.27 TCGA-56-8622-01 14 39650817 39650817 G T PNN Missense_Mutation p.S635I 0.15 deleterious_low_confidence(0.01) unknown(0) TCGA-56-8622-01 14 54417389 54417389 G C BMP4 Missense_Mutation p.I196M 0.23 deleterious(0) probably_damaging(0.982) TCGA-56-8622-01 14 60750112 60750112 G T PPM1A Missense_Mutation p.D304Y 0.26 deleterious(0) probably_damaging(1) TCGA-56-8622-01 14 74824356 74824356 C A VRTN Missense_Mutation p.S290R 0.23 deleterious(0.05) benign(0.046) TCGA-56-8622-01 14 77685249 77685249 G T TMEM63C Missense_Mutation p.Q31H 0.27 deleterious(0.01) benign(0.019) TCGA-56-8622-01 15 100339845 100339845 A G DNM1P46 RNA 0.25 TCGA-56-8622-01 15 20495433 20495433 A G CHEK2P2 RNA 0.15 TCGA-56-8622-01 15 24923422 24923422 C G NPAP1 Missense_Mutation p.T803S 0.25 tolerated_low_confidence(0.48) benign(0.006) TCGA-56-8622-01 15 25460715 25460715 C G SNORD115-25 RNA 0.21 TCGA-56-8622-01 15 35083364 35083364 C T ACTC1 Missense_Mutation p.R314H 0.23 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-56-8622-01 15 54305806 54305806 A T UNC13C Missense_Mutation p.I236F 0.29 deleterious_low_confidence(0) benign(0.227) TCGA-56-8622-01 15 63966736 63966736 G A HERC1 Missense_Mutation p.P2551S 0.11 benign(0.003) TCGA-56-8622-01 15 69714700 69714700 A G KIF23 Missense_Mutation p.I163M 0.21 deleterious(0) possibly_damaging(0.649) TCGA-56-8622-01 15 70960117 70960117 G C UACA Missense_Mutation p.A969G 0.26 deleterious(0.05) probably_damaging(0.996) TCGA-56-8622-01 16 20781393 20781393 G T ACSM3 Missense_Mutation p.A13S 0.20 tolerated_low_confidence(0.32) benign(0.015) TCGA-56-8622-01 16 30960744 30960744 C T ORAI3 Missense_Mutation p.S45L 0.22 deleterious(0) probably_damaging(0.965) TCGA-56-8622-01 16 3274083 3274083 C G ZNF200 Missense_Mutation p.E333Q 0.17 deleterious(0.05) benign(0.361) TCGA-56-8622-01 16 3274331 3274331 C T ZNF200 Missense_Mutation p.R250K 0.23 tolerated(0.24) benign(0.027) TCGA-56-8622-01 16 3274333 3274333 C T ZNF200 Silent p.R249R 0.23 TCGA-56-8622-01 16 3274563 3274563 C G ZNF200 Missense_Mutation p.E173Q 0.27 tolerated(0.1) benign(0.012) TCGA-56-8622-01 16 3434510 3434510 C T ZSCAN32 Missense_Mutation p.G183S 0.16 tolerated(0.76) benign(0.032) TCGA-56-8622-01 16 50811736 50811736 G T CYLD Missense_Mutation p.G341V 0.18 tolerated(0.08) possibly_damaging(0.567) TCGA-56-8622-01 16 58620462 58620462 C T CNOT1 Silent p.K208K 0.22 TCGA-56-8622-01 16 74386251 74386251 A C RP11-252A24.2 RNA 0.29 TCGA-56-8622-01 16 747091 747091 G T FBXL16 Silent p.L105L 0.26 TCGA-56-8622-01 16 77232101 77232101 A T MON1B Nonsense_Mutation p.K514* 0.29 TCGA-56-8622-01 16 84255963 84255963 G A KCNG4 Missense_Mutation p.R474C 0.05 deleterious(0) probably_damaging(0.997) TCGA-56-8622-01 16 88717437 88717437 G T CYBA 5'UTR 0.24 TCGA-56-8622-01 16 89350461 89350461 T C ANKRD11 Missense_Mutation p.K830R 0.11 probably_damaging(0.991) TCGA-56-8622-01 17 1359187 1359187 G T CRK Silent p.P75P 0.32 TCGA-56-8622-01 17 18069770 18069770 C T MYO15A Missense_Mutation p.R3295C 0.21 unknown(0) TCGA-56-8622-01 17 26668295 26668295 C T TNFAIP1 Silent p.N136N 0.31 TCGA-56-8622-01 17 34328592 34328592 C T CCL15 5'UTR 0.35 TCGA-56-8622-01 17 35479467 35479467 C A ACACA Missense_Mutation p.D2042Y 0.23 deleterious(0) probably_damaging(0.983) TCGA-56-8622-01 17 38183678 38183678 G A MED24 Silent p.S496S 0.17 TCGA-56-8622-01 17 55078328 55078329 - T SCPEP1 Frame_Shift_Ins p.L370Sfs*24 0.20 TCGA-56-8622-01 17 61573871 61573871 G A ACE Missense_Mutation p.R1166H 0.17 deleterious(0.01) possibly_damaging(0.612) TCGA-56-8622-01 17 6331676 6331676 C A AIPL1 Nonsense_Mutation p.E143* 0.30 TCGA-56-8622-01 17 66533614 66533614 G A FAM20A 3'UTR 0.21 TCGA-56-8622-01 17 7578556 7578556 T A TP53 Splice_Site p.X126_splice 0.42 TCGA-56-8622-01 17 902072 902072 G T TIMM22 Missense_Mutation p.V98L 0.22 tolerated(0.23) benign(0.172) TCGA-56-8622-01 18 11999158 11999158 G A IMPA2 Missense_Mutation p.E68K 0.25 tolerated(0.32) benign(0.12) TCGA-56-8622-01 18 29793234 29793234 A G MEP1B Missense_Mutation p.I431V 0.24 tolerated(1) benign(0.003) TCGA-56-8622-01 18 3879444 3879444 C A DLGAP1 Missense_Mutation p.D209Y 0.21 deleterious(0) probably_damaging(0.959) TCGA-56-8622-01 18 54362331 54362331 G T WDR7 Missense_Mutation p.R420L 0.24 deleterious(0.01) possibly_damaging(0.676) TCGA-56-8622-01 18 7034577 7034577 T G LAMA1 Missense_Mutation p.K651T 0.17 tolerated(0.31) possibly_damaging(0.533) TCGA-56-8622-01 18 74637391 74637391 C G ZNF236 Missense_Mutation p.S1301C 0.17 deleterious(0.03) benign(0.345) TCGA-56-8622-01 19 10102303 10102303 C A COL5A3 Missense_Mutation p.G659C 0.20 unknown(0) TCGA-56-8622-01 19 10464721 10464721 G A TYK2 Nonsense_Mutation p.Q969* 0.05 TCGA-56-8622-01 19 14029618 14029618 C T CC2D1A Missense_Mutation p.P336S 0.26 tolerated(0.18) benign(0.004) TCGA-56-8622-01 19 15198522 15198522 C A OR1I1 Missense_Mutation p.L216I 0.20 tolerated(0.85) benign(0.027) TCGA-56-8622-01 19 19166701 19166701 G A ARMC6 Silent p.Q419Q 0.22 TCGA-56-8622-01 19 22941028 22941028 C - ZNF99 Frame_Shift_Del p.K562Rfs*52 0.09 TCGA-56-8622-01 19 42223850 42223850 G A CEACAM5 Silent p.A498A 0.23 TCGA-56-8622-01 19 44010895 44010895 G C ETHE1 3'UTR 0.09 TCGA-56-8622-01 19 44010896 44010896 G A ETHE1 3'UTR 0.09 TCGA-56-8622-01 19 44378035 44378035 T C ZNF404 Missense_Mutation p.I111V 0.17 tolerated(0.19) benign(0.015) TCGA-56-8622-01 19 49967485 49967485 C T ALDH16A1 Silent p.S432S 0.37 TCGA-56-8622-01 19 52034044 52034044 C T SIGLEC6 Silent p.V199V 0.22 TCGA-56-8622-01 19 52507092 52507092 C A ZNF615 5'UTR 0.20 TCGA-56-8622-01 19 5286194 5286194 C A PTPRS 5'UTR 0.14 TCGA-56-8622-01 19 53303747 53303747 G A ZNF28 Nonsense_Mutation p.Q451* 0.10 TCGA-56-8622-01 19 53884641 53884641 C T ZNF525 Missense_Mutation p.P270L 0.17 deleterious(0.01) possibly_damaging(0.493) TCGA-56-8622-01 19 55401234 55401234 C A FCAR 3'UTR 0.24 TCGA-56-8622-01 19 55648488 55648488 C T TNNT1 Missense_Mutation p.M198I 0.10 deleterious(0.01) benign(0.091) TCGA-56-8622-01 19 5668206 5668206 G T SAFB Silent p.R886R 0.20 TCGA-56-8622-01 19 57327022 57327022 G A PEG3 Missense_Mutation p.R930C 0.31 tolerated(0.12) benign(0.035) TCGA-56-8622-01 19 6679444 6679444 C T C3 Missense_Mutation p.R1507H 0.22 tolerated(1) benign(0) TCGA-56-8622-01 19 8171075 8171075 C - FBN3 Frame_Shift_Del p.G1577Vfs*72 0.13 TCGA-56-8622-01 19 9072350 9072350 G A MUC16 Silent p.P5032P 0.11 TCGA-56-8622-01 19 9085463 9085463 C T MUC16 Missense_Mutation p.A2118T 0.25 unknown(0) TCGA-56-8622-01 19 9091113 9091113 A C MUC16 Nonsense_Mutation p.Y234* 0.25 TCGA-56-8622-01 1 107867418 107867418 G A NTNG1 Missense_Mutation p.R254K 0.23 tolerated(0.51) benign(0.273) TCGA-56-8622-01 1 111434974 111434974 G A CD53 Missense_Mutation p.G24D 0.19 deleterious(0) probably_damaging(0.997) TCGA-56-8622-01 1 114438636 114438636 C G AP4B1 Missense_Mutation p.R512P 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-56-8622-01 1 115537531 115537531 C T SYCP1 Missense_Mutation p.S941F 0.26 deleterious(0) possibly_damaging(0.868) TCGA-56-8622-01 1 151220470 151220470 G T PIP5K1A 3'Flank 0.33 TCGA-56-8622-01 1 152681894 152681894 C A LCE4A 3'UTR 0.31 TCGA-56-8622-01 1 155232024 155232024 A T SCAMP3 5'UTR 0.35 TCGA-56-8622-01 1 158261047 158261047 C A CD1C Nonsense_Mutation p.S62* 0.25 TCGA-56-8622-01 1 160523701 160523701 G C CD84 Silent p.A208A 0.19 TCGA-56-8622-01 1 175046627 175046627 C A TNN Missense_Mutation p.P25T 0.22 tolerated(0.13) possibly_damaging(0.907) TCGA-56-8622-01 1 177936931 177936931 G A SEC16B Silent p.P62P 0.20 TCGA-56-8622-01 1 179523664 179523664 A C NPHS2 Silent p.V247V 0.19 TCGA-56-8622-01 1 184792388 184792388 C T FAM129A Missense_Mutation p.A300T 0.05 tolerated(0.65) benign(0.012) TCGA-56-8622-01 1 190129950 190129950 C G BRINP3 Missense_Mutation p.L344F 0.41 tolerated(0.87) benign(0.004) TCGA-56-8622-01 1 19499770 19499770 C T UBR4 Missense_Mutation p.E1066K 0.08 benign(0.005) TCGA-56-8622-01 1 198719629 198719629 G T PTPRC Missense_Mutation p.W1027C 0.27 deleterious(0) probably_damaging(1) TCGA-56-8622-01 1 201019530 201019530 C A CACNA1S Missense_Mutation p.D1410Y 0.25 deleterious(0) probably_damaging(0.967) TCGA-56-8622-01 1 201120963 201120963 C A TMEM9 Silent p.R28R 0.30 TCGA-56-8622-01 1 220151896 220151896 C A EPRS Nonsense_Mutation p.E1359* 0.22 TCGA-56-8622-01 1 237054547 237054547 A G MTR Missense_Mutation p.Q1041R 0.21 deleterious(0.03) benign(0.021) TCGA-56-8622-01 1 237729922 237729922 C A RYR2 Silent p.A1090A 0.26 TCGA-56-8622-01 1 241798857 241798857 T C CHML Missense_Mutation p.E71G 0.23 tolerated(0.08) benign(0.023) TCGA-56-8622-01 1 243329268 243329268 T A CEP170 Missense_Mutation p.Q665L 0.20 tolerated(0.36) benign(0.002) TCGA-56-8622-01 1 244641231 244641231 G T C1orf101 Missense_Mutation p.C71F 0.11 deleterious(0) probably_damaging(1) TCGA-56-8622-01 1 244641235 244641235 C T C1orf101 Silent p.S72S 0.11 TCGA-56-8622-01 1 247059168 247059168 C T AHCTF1 Silent p.L570L 0.26 TCGA-56-8622-01 1 247921396 247921396 C T OR1C1 Missense_Mutation p.V105I 0.31 tolerated(1) benign(0) TCGA-56-8622-01 1 248129538 248129538 C A OR2AK2 Missense_Mutation p.P302Q 0.25 deleterious(0) probably_damaging(1) TCGA-56-8622-01 1 248263009 248263009 G A OR2L13 Missense_Mutation p.G111D 0.22 tolerated(0.1) benign(0.157) TCGA-56-8622-01 1 26872423 26872423 G A RPS6KA1 Missense_Mutation p.R11Q 0.35 tolerated_low_confidence(0.13) benign(0) TCGA-56-8622-01 1 27121388 27121388 C T PIGV Missense_Mutation p.A288V 0.22 tolerated(0.31) benign(0.012) TCGA-56-8622-01 1 32673581 32673581 A C IQCC Silent p.P513P 0.14 TCGA-56-8622-01 1 33241693 33241693 C T YARS Splice_Site p.X493_splice 0.30 TCGA-56-8622-01 1 38185271 38185271 C T EPHA10 Silent p.K857K 0.24 TCGA-56-8622-01 1 46476544 46476544 G C MAST2 Missense_Mutation p.R374P 0.16 deleterious_low_confidence(0) possibly_damaging(0.746) TCGA-56-8622-01 1 6311465 6311465 C A GPR153 Silent p.R304R 0.59 TCGA-56-8622-01 1 65858345 65858345 G T DNAJC6 Missense_Mutation p.S567I 0.23 tolerated(0.15) benign(0.093) TCGA-56-8622-01 1 8073567 8073567 C A ERRFI1 Silent p.L364L 0.13 TCGA-56-8622-01 1 8075672 8075672 A G ERRFI1 Missense_Mutation p.I3T 0.11 tolerated(1) benign(0) TCGA-56-8622-01 1 92441940 92441940 C T BRDT Missense_Mutation p.P188L 0.24 deleterious(0.04) benign(0.006) TCGA-56-8622-01 1 95290189 95290189 A G SLC44A3 Silent p.K92K 0.24 TCGA-56-8622-01 20 51870583 51870583 C A TSHZ2 Missense_Mutation p.Q196K 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-56-8622-01 20 52775570 52775570 A G CYP24A1 Silent p.P361P 0.10 TCGA-56-8622-01 20 5564939 5564939 A G GPCPD1 Missense_Mutation p.F113L 0.14 deleterious(0.04) probably_damaging(0.957) TCGA-56-8622-01 20 61526495 61526495 C A DIDO1 Missense_Mutation p.R746L 0.18 probably_damaging(0.999) TCGA-56-8622-01 20 62836443 62836443 C A MYT1 Missense_Mutation p.H48N 0.36 benign(0.003) TCGA-56-8622-01 21 10941936 10941936 C A TPTE Missense_Mutation p.R256M 0.08 deleterious(0) possibly_damaging(0.519) TCGA-56-8622-01 21 35144584 35144584 G A ITSN1 Missense_Mutation p.R421Q 0.44 tolerated(0.09) unknown(0) TCGA-56-8622-01 21 38639631 38639631 C T DSCR3 5'UTR 0.17 TCGA-56-8622-01 22 42525791 42525791 G A CYP2D6 Missense_Mutation p.R101C 0.23 deleterious(0) probably_damaging(1) TCGA-56-8622-01 2 141093185 141093185 C A LRP1B Missense_Mutation p.G4039W 0.14 benign(0.338) TCGA-56-8622-01 2 160268846 160268846 C A BAZ2B Nonsense_Mutation p.E893* 0.21 TCGA-56-8622-01 2 166536237 166536237 C A CSRNP3 Missense_Mutation p.P578T 0.19 deleterious_low_confidence(0.01) benign(0.221) TCGA-56-8622-01 2 170009309 170009309 C T LRP2 Missense_Mutation p.R4154K 0.21 probably_damaging(0.977) TCGA-56-8622-01 2 179436019 179436019 C G TTN Missense_Mutation p.R24947P 0.13 TCGA-56-8622-01 2 179579026 179579026 G A TTN Silent p.S8825S 0.15 TCGA-56-8622-01 2 215845230 215845230 G A ABCA12 Missense_Mutation p.H1573Y 0.19 deleterious(0.01) probably_damaging(0.968) TCGA-56-8622-01 2 239049914 239049914 G A KLHL30 Silent p.Q173Q 0.24 TCGA-56-8622-01 2 241494379 241494379 C A ANKMY1 5'UTR 0.13 TCGA-56-8622-01 2 26950703 26950703 G A KCNK3 Missense_Mutation p.R151H 0.19 tolerated(0.12) benign(0.002) TCGA-56-8622-01 2 29445413 29445413 G A ALK Silent p.N1140N 0.06 TCGA-56-8622-01 2 37458880 37458880 C T NDUFAF7 Missense_Mutation p.P11L 0.18 tolerated_low_confidence(0.65) benign(0.001) TCGA-56-8622-01 2 40392086 40392086 C T SLC8A1 Missense_Mutation p.E693K 0.22 tolerated(0.1) benign(0.014) TCGA-56-8622-01 2 54155305 54155305 C T PSME4 Silent p.L484L 0.22 TCGA-56-8622-01 2 55253112 55253112 G A RTN4 Missense_Mutation p.S708F 0.17 deleterious(0) probably_damaging(0.91) TCGA-56-8622-01 2 71160153 71160153 C A VAX2 Missense_Mutation p.P231Q 0.30 tolerated(0.11) benign(0.012) TCGA-56-8622-01 2 71913807 71913807 C A DYSF 3'Flank 0.33 TCGA-56-8622-01 2 80831302 80831302 C A CTNNA2 Missense_Mutation p.Q765K 0.11 deleterious(0.05) benign(0.026) TCGA-56-8622-01 3 122354849 122354849 T C PARP15 Missense_Mutation p.F647L 0.34 deleterious(0) benign(0.264) TCGA-56-8622-01 3 124053254 124053254 A G KALRN Missense_Mutation p.Q518R 0.24 tolerated(0.08) possibly_damaging(0.79) TCGA-56-8622-01 3 130284448 130284448 G T COL6A6 Silent p.T424T 0.21 TCGA-56-8622-01 3 137484265 137484266 - C SOX14 Frame_Shift_Ins p.V216Rfs*34 0.18 TCGA-56-8622-01 3 184100678 184100678 A T CHRD Silent p.L339L 0.25 TCGA-56-8622-01 3 195622168 195622168 C G TNK2 Missense_Mutation p.M40I 0.10 deleterious_low_confidence(0) benign(0.007) TCGA-56-8622-01 3 38354562 38354562 C T SLC22A14 Silent p.Y339Y 0.22 TCGA-56-8622-01 3 52643777 52643777 C A PBRM1 Nonsense_Mutation p.E707* 0.28 TCGA-56-8622-01 3 57232227 57232227 A T HESX1 Nonstop_Mutation p.*186Kext*4 0.35 TCGA-56-8622-01 3 89445027 89445027 C A EPHA3 Silent p.S449S 0.21 TCGA-56-8622-01 4 101109190 101109190 A T DDIT4L Missense_Mutation p.S76T 0.05 tolerated(0.27) benign(0.377) TCGA-56-8622-01 4 167663195 167663195 G T SPOCK3 Missense_Mutation p.T319N 0.42 tolerated(0.49) possibly_damaging(0.493) TCGA-56-8622-01 4 173232844 173232844 T G GALNTL6 Missense_Mutation p.N109K 0.23 deleterious(0) probably_damaging(0.999) TCGA-56-8622-01 4 173232853 173232853 C A GALNTL6 Silent p.V112V 0.22 TCGA-56-8622-01 4 175229939 175229939 G C CEP44 Missense_Mutation p.V203L 0.17 tolerated(0.4) benign(0.004) TCGA-56-8622-01 4 17581471 17581471 A T LAP3 Nonsense_Mutation p.K43* 0.19 TCGA-56-8622-01 4 178360790 178360790 T C AGA Missense_Mutation p.I112V 0.35 tolerated(0.07) benign(0.261) TCGA-56-8622-01 4 187527247 187527247 C A FAT1 Nonsense_Mutation p.G3443* 0.27 TCGA-56-8622-01 4 46264087 46264087 G T GABRA2 Silent p.P305P 0.26 TCGA-56-8622-01 4 47571036 47571036 G T ATP10D Silent p.L1012L 0.18 TCGA-56-8622-01 4 55131248 55131248 A G PDGFRA Intron 0.32 TCGA-56-8622-01 4 57221406 57221406 C A AASDH Missense_Mutation p.V349L 0.28 deleterious(0) probably_damaging(0.999) TCGA-56-8622-01 4 7741929 7741929 A G SORCS2 Missense_Mutation p.N1140D 0.26 deleterious_low_confidence(0.03) possibly_damaging(0.526) TCGA-56-8622-01 4 77660871 77660871 T G SHROOM3 Missense_Mutation p.D515E 0.22 deleterious(0.05) probably_damaging(0.912) TCGA-56-8622-01 4 79301151 79301151 G T FRAS1 Splice_Site p.X1188_splice 0.19 TCGA-56-8622-01 4 81966897 81966897 C G BMP3 Missense_Mutation p.L108V 0.25 tolerated(0.9) benign(0.024) TCGA-56-8622-01 4 86491764 86491764 G T ARHGAP24 Missense_Mutation p.G24W 0.19 deleterious(0) probably_damaging(1) TCGA-56-8622-01 4 89384711 89384711 A T HERC5 Silent p.G239G 0.11 TCGA-56-8622-01 4 94411910 94411910 G T GRID2 Missense_Mutation p.R660L 0.28 deleterious(0) probably_damaging(0.999) TCGA-56-8622-01 5 158223394 158223394 C A EBF1 Missense_Mutation p.G290W 0.32 deleterious(0) probably_damaging(1) TCGA-56-8622-01 5 161576132 161576132 C T GABRG2 Missense_Mutation p.T354I 0.31 deleterious(0) probably_damaging(0.999) TCGA-56-8622-01 5 176778287 176778287 C A LMAN2 Missense_Mutation p.G68C 0.19 deleterious(0) probably_damaging(0.987) TCGA-56-8622-01 5 32098586 32098586 G A PDZD2 Silent p.L2688L 0.06 TCGA-56-8622-01 5 33637796 33637796 T A ADAMTS12 Missense_Mutation p.N592Y 0.74 deleterious(0) probably_damaging(0.991) TCGA-56-8622-01 5 35904617 35904617 G T CAPSL 3'UTR 0.08 TCGA-56-8622-01 5 37183042 37183042 C A C5orf42 Silent p.L1747L 0.05 TCGA-56-8622-01 5 41934341 41934341 C G FBXO4 Missense_Mutation p.P277A 0.24 tolerated(0.35) probably_damaging(0.972) TCGA-56-8622-01 5 44388466 44388466 G T FGF10 Missense_Mutation p.P107T 0.11 tolerated(0.08) possibly_damaging(0.851) TCGA-56-8622-01 5 60982713 60982713 T G C5orf64 Missense_Mutation p.F14C 0.31 deleterious_low_confidence(0) possibly_damaging(0.777) TCGA-56-8622-01 6 110426702 110426702 C A WASF1 Silent p.L207L 0.23 TCGA-56-8622-01 6 116948954 116948954 C T RSPH4A Silent p.L362L 0.22 TCGA-56-8622-01 6 159644595 159644595 G A FNDC1 Missense_Mutation p.V268I 0.19 deleterious(0.01) unknown(0) TCGA-56-8622-01 6 33139337 33139337 G - COL11A2 Frame_Shift_Del p.I970Lfs*289 0.22 TCGA-56-8622-01 6 33245131 33245131 G T B3GALT4 5'UTR 0.26 TCGA-56-8622-01 6 38746227 38746227 C T DNAH8 Nonsense_Mutation p.Q459* 0.29 TCGA-56-8622-01 6 40399835 40399835 C T LRFN2 Missense_Mutation p.D340N 0.28 tolerated(0.2) benign(0.038) TCGA-56-8622-01 6 41712411 41712411 G T PGC Silent p.P65P 0.25 TCGA-56-8622-01 6 50686833 50686833 C G TFAP2D Missense_Mutation p.L190V 0.11 tolerated(0.28) possibly_damaging(0.636) TCGA-56-8622-01 6 52147589 52147589 C G MCM3 Missense_Mutation p.D133H 0.23 tolerated(0.19) possibly_damaging(0.897) TCGA-56-8622-01 6 56917666 56917666 A G KIAA1586 Silent p.S123S 0.39 TCGA-56-8622-01 6 57512584 57512584 C G PRIM2 3'UTR 0.08 TCGA-56-8622-01 6 84665142 84665142 G T CYB5R4 Missense_Mutation p.C491F 0.18 deleterious(0) probably_damaging(1) TCGA-56-8622-01 7 107674702 107674702 A G LAMB4 Missense_Mutation p.I1590T 0.04 deleterious(0.02) benign(0.164) TCGA-56-8622-01 7 110764066 110764066 G A LRRN3 Missense_Mutation p.R413K 0.31 tolerated(0.09) probably_damaging(0.996) TCGA-56-8622-01 7 142448658 142448658 C G TRBV29-1 Missense_Mutation p.S84R 0.23 deleterious(0.01) benign(0.126) TCGA-56-8622-01 7 146825878 146825878 G C CNTNAP2 Missense_Mutation p.V345L 0.29 tolerated(0.24) benign(0.039) TCGA-56-8622-01 7 149515850 149515850 G - SSPO RNA 0.30 TCGA-56-8622-01 7 150554344 150554344 C A AOC1 Silent p.V262V 0.25 TCGA-56-8622-01 7 2972215 2972215 C T CARD11 Silent p.Q508Q 0.22 TCGA-56-8622-01 7 86556123 86556123 G T KIAA1324L Missense_Mutation p.P400H 0.23 deleterious(0) probably_damaging(0.994) TCGA-56-8622-01 7 88964169 88964169 C T ZNF804B Silent p.L625L 0.15 TCGA-56-8622-01 7 92731594 92731594 C T SAMD9 Missense_Mutation p.E1273K 0.21 deleterious(0) benign(0.039) TCGA-56-8622-01 7 96639161 96639161 G A DLX6 Silent p.Q228Q 0.29 TCGA-56-8622-01 7 96639162 96639162 G T DLX6 Missense_Mutation p.G229C 0.29 deleterious(0) probably_damaging(0.999) TCGA-56-8622-01 7 99063743 99063743 G A ATP5J2 Missense_Mutation p.P8S 0.15 tolerated(0.44) benign(0) TCGA-56-8622-01 8 104447878 104447878 A G DCAF13 Silent p.A422A 0.39 TCGA-56-8622-01 8 109240519 109240519 A G EIF3E Silent p.I233I 0.38 TCGA-56-8622-01 8 118165239 118165239 G C SLC30A8 Missense_Mutation p.D110H 0.32 deleterious(0) probably_damaging(0.987) TCGA-56-8622-01 8 124408690 124408690 C A ATAD2 5'UTR 0.25 TCGA-56-8622-01 8 18080128 18080128 C G NAT1 Missense_Mutation p.S253C 0.31 tolerated(0.28) benign(0.137) TCGA-56-8622-01 8 22885894 22885894 T C TNFRSF10B Missense_Mutation p.K233R 0.18 tolerated(0.57) benign(0.047) TCGA-56-8622-01 8 42196039 42196039 G T POLB 5'UTR 0.50 TCGA-56-8622-01 8 68396007 68396007 C A CPA6 Missense_Mutation p.W278C 0.17 deleterious(0) probably_damaging(0.999) TCGA-56-8622-01 8 72958807 72958807 C T TRPA1 Missense_Mutation p.E668K 0.35 tolerated(0.43) benign(0.169) TCGA-56-8622-01 8 77617522 77617522 A - ZFHX4 Frame_Shift_Del p.M401Cfs*6 0.21 TCGA-56-8622-01 8 77765168 77765168 C T ZFHX4 Missense_Mutation p.P2004L 0.25 possibly_damaging(0.851) TCGA-56-8622-01 8 87638259 87638259 G T CNGB3 Silent p.L510L 0.29 TCGA-56-8622-01 8 89198800 89198800 T G MMP16 Silent p.V103V 0.23 TCGA-56-8622-01 8 90777677 90777677 G A RIPK2 Missense_Mutation p.D146N 0.14 deleterious(0) probably_damaging(1) TCGA-56-8622-01 9 107289300 107289300 C - OR13C4 Frame_Shift_Del p.G64Afs*20 0.17 TCGA-56-8622-01 9 117240780 117240780 G A DFNB31 Intron 0.38 TCGA-56-8622-01 9 121930241 121930241 C T BRINP1 Silent p.E469E 0.34 TCGA-56-8622-01 9 123744207 123744207 G A C5 Missense_Mutation p.P1134L 0.14 deleterious(0.03) possibly_damaging(0.827) TCGA-56-8622-01 9 139399816 139399816 G A NOTCH1 Missense_Mutation p.S1511L 0.42 deleterious(0.01) possibly_damaging(0.684) TCGA-56-8622-01 9 140082200 140082200 C A ANAPC2 Missense_Mutation p.R158L 0.24 deleterious(0) benign(0.065) TCGA-56-8622-01 9 18776918 18776918 G C ADAMTSL1 Silent p.L897L 0.21 TCGA-56-8622-01 9 6592856 6592856 C A GLDC Missense_Mutation p.G466C 0.21 deleterious(0.03) benign(0.093) TCGA-56-8622-01 X 100513399 100513399 G A DRP2 Missense_Mutation p.R831H 0.58 tolerated(0.27) benign(0.002) TCGA-56-8622-01 X 111698815 111698815 G C ZCCHC16 Missense_Mutation p.G287R 0.44 deleterious(0) probably_damaging(0.943) TCGA-56-8622-01 X 135750301 135750301 C T ARHGEF6 Missense_Mutation p.E740K 0.47 deleterious(0.05) benign(0.251) TCGA-56-8622-01 X 136649708 136649708 T C ZIC3 Silent p.H286H 0.17 TCGA-56-8622-01 X 152612675 152612675 G A ZNF275 Missense_Mutation p.A178T 0.48 tolerated(0.33) benign(0.097) TCGA-56-8622-01 X 155227408 155227408 G A IL9R 5'UTR 0.27 TCGA-56-8622-01 X 34149401 34149401 G T FAM47A Missense_Mutation p.T332N 0.58 deleterious(0.03) probably_damaging(0.978) TCGA-56-8622-01 X 41586776 41586776 T C GPR82 Missense_Mutation p.I166T 0.51 tolerated(0.29) benign(0.008) TCGA-56-8622-01 X 46887438 46887438 G A JADE3 Missense_Mutation p.R207Q 0.06 tolerated(0.17) benign(0.199) TCGA-56-8622-01 X 48682960 48682960 C G HDAC6 Missense_Mutation p.L1196V 0.22 tolerated(0.19) benign(0.051) TCGA-56-8622-01 X 68725516 68725516 C T FAM155B Missense_Mutation p.R131W 0.35 deleterious(0.02) benign(0.056) TCGA-56-8622-01 X 73070805 73070805 C A XIST RNA 0.36 TCGA-56-8624-01 10 102276719 102276719 T C NDUFB8 Splice_Site 0.12 TCGA-56-8624-01 10 108427519 108427519 G T SORCS1 Missense_Mutation p.P744Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-56-8624-01 10 118434409 118434409 G A HSPA12A Silent p.P637P 0.22 TCGA-56-8624-01 10 118728201 118728201 C T KIAA1598 Missense_Mutation p.R45Q 0.13 deleterious(0) possibly_damaging(0.794) TCGA-56-8624-01 10 72541573 72541573 G T TBATA Missense_Mutation p.H87Q 0.22 deleterious(0.02) possibly_damaging(0.735) TCGA-56-8624-01 11 119213410 119213410 C G MFRP Missense_Mutation p.C428S 0.25 deleterious(0) benign(0.043) TCGA-56-8624-01 11 20648259 20648259 G T SLC6A5 Silent p.V422V 0.19 TCGA-56-8624-01 11 55703827 55703827 A C OR5I1 Nonsense_Mutation p.L17* 0.13 TCGA-56-8624-01 11 82997018 82997018 C A CCDC90B 5'UTR 0.25 TCGA-56-8624-01 11 86663299 86663299 C A FZD4 Missense_Mutation p.V167L 0.05 tolerated(0.4) benign(0.001) TCGA-56-8624-01 11 89424278 89424278 C T FOLH1B RNA 0.08 TCGA-56-8624-01 12 104046445 104046445 T A STAB2 Missense_Mutation p.L457M 0.22 deleterious(0.02) probably_damaging(0.969) TCGA-56-8624-01 12 2022210 2022210 C G CACNA2D4 Silent p.R135R 0.10 TCGA-56-8624-01 12 25257296 25257296 C T LRMP Missense_Mutation p.R350C 0.06 deleterious(0.03) probably_damaging(0.967) TCGA-56-8624-01 12 51717894 51717894 A T BIN2 5'UTR 0.12 TCGA-56-8624-01 12 53663282 53663282 G C ESPL1 Missense_Mutation p.E186Q 0.13 tolerated(0.22) benign(0.1) TCGA-56-8624-01 12 6059020 6059020 C A VWF Missense_Mutation p.A2729S 0.17 tolerated(0.09) possibly_damaging(0.739) TCGA-56-8624-01 12 6059021 6059021 A G VWF Silent p.T2728T 0.17 TCGA-56-8624-01 12 70963522 70963522 C A PTPRB Missense_Mutation p.Q1189H 0.29 tolerated(0.61) possibly_damaging(0.482) TCGA-56-8624-01 12 8374898 8374898 G T FAM90A1 Silent p.P305P 0.30 TCGA-56-8624-01 12 8374899 8374899 G T FAM90A1 Missense_Mutation p.P305H 0.30 tolerated(0.06) probably_damaging(0.987) TCGA-56-8624-01 13 20279877 20279877 C A PSPC1 Missense_Mutation p.M437I 0.27 tolerated(0.4) benign(0.043) TCGA-56-8624-01 13 48951053 48951053 G C RB1 Splice_Site p.X406_splice 0.35 TCGA-56-8624-01 13 51530631 51530631 G T RNASEH2B 3'UTR 0.33 TCGA-56-8624-01 14 22134020 22134020 G T OR4E2 Missense_Mutation p.A242S 0.21 tolerated(1) benign(0.124) TCGA-56-8624-01 14 23374151 23374151 T A RBM23 Missense_Mutation p.Y266F 0.08 deleterious(0.01) benign(0.092) TCGA-56-8624-01 14 23374156 23374156 G A RBM23 Silent p.R264R 0.08 TCGA-56-8624-01 14 28734164 28734164 C A BNIP3P1 RNA 0.29 TCGA-56-8624-01 14 31355109 31355109 G C COCH Missense_Mutation p.M356I 0.13 deleterious(0.01) benign(0.082) TCGA-56-8624-01 14 70924679 70924679 G C ADAM21 Missense_Mutation p.E155Q 0.09 deleterious(0.01) possibly_damaging(0.716) TCGA-56-8624-01 14 70925359 70925359 T A ADAM21 Silent p.A381A 0.29 TCGA-56-8624-01 14 79181273 79181273 G A NRXN3 Missense_Mutation p.R239H 0.18 deleterious(0) probably_damaging(0.954) TCGA-56-8624-01 14 81610498 81610498 G A TSHR Missense_Mutation p.C699Y 0.39 tolerated(0.19) probably_damaging(1) TCGA-56-8624-01 15 25415726 25415726 C A SNORD115-3 5'Flank 0.18 TCGA-56-8624-01 15 43653086 43653086 C G ZSCAN29 3'UTR 0.29 TCGA-56-8624-01 15 50570769 50570769 C A GABPB1 3'UTR 0.26 TCGA-56-8624-01 15 62993305 62993305 G T TLN2 Missense_Mutation p.A530S 0.20 tolerated(0.12) benign(0.328) TCGA-56-8624-01 15 65494265 65494265 C T CILP Silent p.K377K 0.28 TCGA-56-8624-01 15 65792958 65792958 G A DPP8 Missense_Mutation p.P194S 0.21 tolerated(0.63) benign(0.017) TCGA-56-8624-01 15 69331257 69331257 T A NOX5 Missense_Mutation p.Y478N 0.21 deleterious(0) probably_damaging(0.981) TCGA-56-8624-01 16 27353468 27353468 A G IL4R Missense_Mutation p.T33A 0.23 tolerated(0.07) benign(0.004) TCGA-56-8624-01 16 449054 449054 G T NME4 Silent p.R52R 0.22 TCGA-56-8624-01 16 70923520 70923520 C T HYDIN Silent p.T3248T 0.17 TCGA-56-8624-01 16 74537638 74537638 C T GLG1 Missense_Mutation p.E189K 0.19 deleterious(0.04) possibly_damaging(0.511) TCGA-56-8624-01 16 76556038 76556038 G T CNTNAP4 Missense_Mutation p.R807M 0.17 tolerated(0.05) probably_damaging(0.923) TCGA-56-8624-01 16 89628788 89628788 C T RPL13 Missense_Mutation p.P156S 0.06 deleterious(0.02) possibly_damaging(0.876) TCGA-56-8624-01 16 89724616 89724616 C T SPATA33 Intron 0.29 TCGA-56-8624-01 17 10301871 10301871 G T MYH8 Silent p.G1356G 0.20 TCGA-56-8624-01 17 15641636 15641636 G T TBC1D26 Missense_Mutation p.G108C 0.26 deleterious(0) probably_damaging(0.992) TCGA-56-8624-01 17 32647322 32647322 C A CCL8 Missense_Mutation p.N37K 0.24 tolerated(0.63) benign(0.025) TCGA-56-8624-01 17 40262775 40262775 G A DHX58 Missense_Mutation p.S176F 0.29 deleterious(0.01) possibly_damaging(0.62) TCGA-56-8624-01 17 42744572 42744572 C T C17orf104 Silent p.P431P 0.32 TCGA-56-8624-01 17 67016649 67016649 G C ABCA9 Missense_Mutation p.S827C 0.34 tolerated(0.16) benign(0.021) TCGA-56-8624-01 17 7577137 7577137 C - TP53 Frame_Shift_Del p.N268Tfs*77 0.23 TCGA-56-8624-01 18 44560428 44560428 G C TCEB3B Missense_Mutation p.A403G 0.29 deleterious(0.01) benign(0) TCGA-56-8624-01 19 36339253 36339253 G A NPHS1 Missense_Mutation p.A406V 0.21 tolerated(1) benign(0.009) TCGA-56-8624-01 19 38817898 38817898 C T KCNK6 Missense_Mutation p.T266M 0.05 deleterious(0.02) probably_damaging(0.995) TCGA-56-8624-01 19 46119751 46119751 C T EML2 Missense_Mutation p.G694S 0.08 deleterious(0.03) benign(0.373) TCGA-56-8624-01 19 47910788 47910788 G T MEIS3 Nonsense_Mutation p.C298* 0.38 TCGA-56-8624-01 19 53270345 53270345 C T ZNF600 Missense_Mutation p.E222K 0.09 tolerated(0.05) probably_damaging(0.91) TCGA-56-8624-01 19 54485518 54485518 C A CACNG8 Missense_Mutation p.S231R 0.20 deleterious(0.01) benign(0.333) TCGA-56-8624-01 19 58721350 58721350 G A ZNF274 Missense_Mutation p.E254K 0.10 tolerated(0.44) benign(0) TCGA-56-8624-01 19 58966896 58966896 G A ZNF324B Silent p.Q195Q 0.19 TCGA-56-8624-01 19 7523454 7523454 C T ARHGEF18 Silent p.N558N 0.17 TCGA-56-8624-01 1 11806254 11806254 C T AGTRAP Intron 0.18 TCGA-56-8624-01 1 118640379 118640379 C T SPAG17 Missense_Mutation p.E309K 0.10 tolerated(0.24) probably_damaging(0.997) TCGA-56-8624-01 1 160094112 160094112 G C ATP1A2 Missense_Mutation p.E174D 0.53 tolerated(0.08) possibly_damaging(0.463) TCGA-56-8624-01 1 16095057 16095057 C T FBLIM1 Missense_Mutation p.P158L 0.16 tolerated(0.2) probably_damaging(0.958) TCGA-56-8624-01 1 171605271 171605271 A T MYOC Missense_Mutation p.Y437N 0.17 deleterious(0) probably_damaging(1) TCGA-56-8624-01 1 197896893 197896893 G C LHX9 Missense_Mutation p.Q302H 0.06 deleterious(0.01) possibly_damaging(0.838) TCGA-56-8624-01 1 198682113 198682113 A T PTPRC Missense_Mutation p.R401S 0.10 tolerated(0.75) benign(0.001) TCGA-56-8624-01 1 224001942 224001942 C T TP53BP2 Missense_Mutation p.V97M 0.18 tolerated(0.1) benign(0.011) TCGA-56-8624-01 1 224002023 224002023 C G TP53BP2 Missense_Mutation p.D70H 0.23 deleterious(0) possibly_damaging(0.681) TCGA-56-8624-01 1 228285294 228285294 C A ARF1 Missense_Mutation p.L88M 0.20 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-56-8624-01 1 39797402 39797402 G A MACF1 Intron 0.22 TCGA-56-8624-01 1 47075294 47075294 C T MOB3C 3'UTR 0.12 TCGA-56-8624-01 1 50661418 50661418 C T ELAVL4 Missense_Mutation p.R249C 0.17 deleterious(0.01) probably_damaging(0.969) TCGA-56-8624-01 1 50661419 50661419 G T ELAVL4 Missense_Mutation p.R249L 0.17 deleterious(0.03) benign(0.131) TCGA-56-8624-01 1 54483795 54483795 T G LDLRAD1 5'UTR 0.09 TCGA-56-8624-01 1 67518705 67518705 G T SLC35D1 Intron 0.24 TCGA-56-8624-01 20 24523656 24523656 G C SYNDIG1 Intron 0.10 TCGA-56-8624-01 20 39833139 39833139 A G ZHX3 Missense_Mutation p.W140R 0.10 deleterious(0) probably_damaging(0.99) TCGA-56-8624-01 20 42826243 42826243 T A OSER1 Missense_Mutation p.S110C 0.12 deleterious(0.01) possibly_damaging(0.841) TCGA-56-8624-01 20 742310 742310 C A SLC52A3 Intron 0.48 TCGA-56-8624-01 21 45977934 45977934 C G KRTAP10-3 Nonstop_Mutation p.*222Sext*15 0.26 TCGA-56-8624-01 22 37695345 37695345 C T CYTH4 Silent p.L144L 0.23 TCGA-56-8624-01 2 108868903 108868903 T C SULT1C3 Silent p.D85D 0.18 TCGA-56-8624-01 2 167168182 167168182 C T SCN9A Missense_Mutation p.E29K 0.10 tolerated(0.09) benign(0.15) TCGA-56-8624-01 2 185801627 185801627 G C ZNF804A Missense_Mutation p.D502H 0.20 deleterious(0.01) benign(0.444) TCGA-56-8624-01 2 223085043 223085043 C A PAX3 Missense_Mutation p.R330I 0.20 deleterious(0) probably_damaging(0.999) TCGA-56-8624-01 2 241676582 241676582 C T KIF1A Missense_Mutation p.R1302H 0.18 deleterious(0) probably_damaging(0.988) TCGA-56-8624-01 2 37594426 37594426 G T QPCT Missense_Mutation p.G200C 0.27 deleterious(0) probably_damaging(1) TCGA-56-8624-01 2 37594427 37594427 G T QPCT Missense_Mutation p.G200V 0.28 deleterious(0) probably_damaging(1) TCGA-56-8624-01 2 38525326 38525326 C A ATL2 Missense_Mutation p.G531V 0.23 deleterious(0.02) possibly_damaging(0.814) TCGA-56-8624-01 2 86830970 86830970 G C RNF103 Missense_Mutation p.S685C 0.23 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-56-8624-01 3 107938316 107938316 G C IFT57 Missense_Mutation p.Q106E 0.07 tolerated(0.1) possibly_damaging(0.796) TCGA-56-8624-01 3 121413457 121413457 A G GOLGB1 Silent p.S1971S 0.09 TCGA-56-8624-01 3 126138990 126138990 C A CCDC37 Silent p.R334R 0.27 TCGA-56-8624-01 3 132426987 132426987 C T NPHP3 Silent p.L411L 0.37 TCGA-56-8624-01 3 183824550 183824550 C A HTR3E 3'Flank 0.37 TCGA-56-8624-01 3 47042888 47042888 G T NBEAL2 Missense_Mutation p.C1535F 0.16 tolerated(0.7) benign(0.001) TCGA-56-8624-01 3 52886686 52886686 C G TMEM110 Missense_Mutation p.G80R 0.31 deleterious(0.02) benign(0.028) TCGA-56-8624-01 3 97888427 97888427 A C OR5H15 Missense_Mutation p.K295T 0.28 deleterious(0) possibly_damaging(0.707) TCGA-56-8624-01 4 115586881 115586881 C G UGT8 Silent p.L337L 0.09 TCGA-56-8624-01 4 145640024 145640024 C A HHIP Intron 0.17 TCGA-56-8624-01 4 148653470 148653470 G A ARHGAP10 Silent p.L6L 0.22 TCGA-56-8624-01 4 154191579 154191579 C G TRIM2 Silent p.R41R 0.34 TCGA-56-8624-01 4 162307366 162307366 C A FSTL5 Missense_Mutation p.V693L 0.23 tolerated(0.23) possibly_damaging(0.645) TCGA-56-8624-01 4 74719553 74719553 C T PF4V1 Nonsense_Mutation p.Q52* 0.09 TCGA-56-8624-01 5 110560239 110560239 A G CAMK4 Missense_Mutation p.S20G 0.27 tolerated_low_confidence(0.1) benign(0.003) TCGA-56-8624-01 5 13841816 13841816 T C DNAH5 Silent p.S1823S 0.21 TCGA-56-8624-01 5 140255777 140255777 G A PCDHA12 Silent p.P240P 0.13 TCGA-56-8624-01 5 140262995 140262995 C G PCDHA13 Nonsense_Mutation p.S381* 0.08 TCGA-56-8624-01 5 140308228 140308228 T A PCDHAC1 Missense_Mutation p.V584E 0.18 deleterious(0.02) possibly_damaging(0.744) TCGA-56-8624-01 5 140557776 140557776 G T PCDHB8 Missense_Mutation p.G54V 0.10 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-56-8624-01 5 140589834 140589834 C A PCDHB12 Missense_Mutation p.T452N 0.21 tolerated_low_confidence(0.08) benign(0.043) TCGA-56-8624-01 5 140718611 140718611 G A PCDHGA2 Missense_Mutation p.E25K 0.10 tolerated_low_confidence(0.15) benign(0.009) TCGA-56-8624-01 5 159835013 159835013 C G SLU7 Missense_Mutation p.E294D 0.12 tolerated(1) benign(0.444) TCGA-56-8624-01 5 160757961 160757961 G - GABRB2 Frame_Shift_Del p.Q336Nfs*71 0.17 TCGA-56-8624-01 5 168093457 168093457 G A SLIT3 3'UTR 0.33 TCGA-56-8624-01 5 176395842 176395842 T C UIMC1 Missense_Mutation p.K305R 0.36 deleterious(0) probably_damaging(0.999) TCGA-56-8624-01 5 179229218 179229218 C G MGAT4B 5'UTR 0.31 TCGA-56-8624-01 5 179545814 179545814 C A RASGEF1C Silent p.V320V 0.32 TCGA-56-8624-01 5 38458412 38458412 G T EGFLAM Splice_Site p.X904_splice 0.23 TCGA-56-8624-01 5 70791147 70791147 G C BDP1 Missense_Mutation p.E571Q 0.06 deleterious(0.01) probably_damaging(0.988) TCGA-56-8624-01 5 83356202 83356202 C G EDIL3 Missense_Mutation p.E352Q 0.07 tolerated(0.3) possibly_damaging(0.816) TCGA-56-8624-01 6 107780389 107780389 G A PDSS2 Missense_Mutation p.S34L 0.30 tolerated(0.16) benign(0) TCGA-56-8624-01 6 152784000 152784000 C T SYNE1 Missense_Mutation p.R708K 0.25 benign(0.012) TCGA-56-8624-01 6 31671011 31671011 G A ABHD16A Silent p.I16I 0.14 TCGA-56-8624-01 6 32065013 32065013 G A TNXB Missense_Mutation p.P206L 0.30 probably_damaging(0.967) TCGA-56-8624-01 6 33177841 33177841 G A RING1 Missense_Mutation p.R130H 0.17 deleterious(0.04) possibly_damaging(0.84) TCGA-56-8624-01 6 43251632 43251632 C A TTBK1 Missense_Mutation p.P1052T 0.09 benign(0.107) TCGA-56-8624-01 6 72975175 72975175 G T RIMS1 Missense_Mutation p.V1093L 0.21 tolerated(0.34) benign(0.002) TCGA-56-8624-01 6 76386814 76386814 G A SENP6 Missense_Mutation p.E564K 0.08 deleterious(0) probably_damaging(0.991) TCGA-56-8624-01 7 103207105 103207105 G C RELN Missense_Mutation p.L1564V 0.15 deleterious(0.01) probably_damaging(0.989) TCGA-56-8624-01 7 150439337 150439337 G T GIMAP5 Missense_Mutation p.G37V 0.23 deleterious(0) probably_damaging(1) TCGA-56-8624-01 7 21940743 21940743 G A DNAH11 Silent p.Q4481Q 0.08 TCGA-56-8624-01 7 21940819 21940819 G C DNAH11 Missense_Mutation p.E4507Q 0.09 benign(0.068) TCGA-56-8624-01 7 30490932 30490932 G A NOD1 Missense_Mutation p.H701Y 0.09 deleterious(0) probably_damaging(0.993) TCGA-56-8624-01 7 37988628 37988628 G A EPDR1 Silent p.S152S 0.08 TCGA-56-8624-01 7 43547694 43547694 G A HECW1 Missense_Mutation p.R1277Q 0.14 deleterious(0) possibly_damaging(0.695) TCGA-56-8624-01 7 44561747 44561747 G A NPC1L1 Missense_Mutation p.S911F 0.28 deleterious(0) possibly_damaging(0.775) TCGA-56-8624-01 7 64863787 64863787 G A ZNF92 Missense_Mutation p.E254K 0.12 tolerated(0.16) benign(0.004) TCGA-56-8624-01 7 86568139 86568139 C A KIAA1324L Missense_Mutation p.D329Y 0.25 deleterious(0.01) probably_damaging(0.933) TCGA-56-8624-01 7 87174280 87174280 A - ABCB1 Frame_Shift_Del p.D642Mfs*21 0.19 TCGA-56-8624-01 7 88965394 88965394 T C ZNF804B Missense_Mutation p.L1033P 0.16 tolerated(0.07) benign(0.002) TCGA-56-8624-01 8 10387180 10387180 G T PRSS55 Silent p.A106A 0.21 TCGA-56-8624-01 8 139164897 139164897 T A FAM135B Silent p.S607S 0.04 TCGA-56-8624-01 8 143425729 143425729 C A TSNARE1 Missense_Mutation p.G115W 0.31 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-56-8624-01 8 42227370 42227370 G T POLB Missense_Mutation p.L259F 0.25 tolerated(0.1) benign(0.214) TCGA-56-8624-01 8 87076457 87076457 C G PSKH2 Missense_Mutation p.E197Q 0.12 deleterious(0) probably_damaging(0.944) TCGA-56-8624-01 8 87568341 87568341 G A CPNE3 Silent p.V422V 0.20 TCGA-56-8624-01 9 33073756 33073756 C A SMU1 Silent p.R25R 0.11 TCGA-56-8624-01 9 33386967 33386967 C A AQP7 Nonsense_Mutation p.G90* 0.06 TCGA-56-8624-01 9 39086802 39086802 C T CNTNAP3 Missense_Mutation p.D1089N 0.23 tolerated(0.05) probably_damaging(0.987) TCGA-56-8624-01 9 86276742 86276742 T C UBQLN1 Missense_Mutation p.N577S 0.40 tolerated(0.08) probably_damaging(0.994) TCGA-56-8624-01 X 113965847 113965847 C A HTR2C Silent p.I60I 0.36 TCGA-56-8624-01 X 119603048 119603048 G A LAMP2 5'UTR 0.36 TCGA-56-8624-01 X 12905802 12905802 C G TLR7 Silent p.L725L 0.32 TCGA-56-8624-01 X 130408792 130408792 C A IGSF1 Missense_Mutation p.D1183Y 0.19 deleterious(0) probably_damaging(0.947) TCGA-56-8624-01 X 1718110 1718110 G T AKAP17A Nonsense_Mutation p.E313* 0.20 TCGA-56-8625-01 10 102027398 102027398 G A CWF19L1 5'UTR 0.14 TCGA-56-8625-01 10 1054955 1054955 G A GTPBP4 Missense_Mutation p.E391K 0.20 tolerated(0.11) benign(0.009) TCGA-56-8625-01 10 108431074 108431074 C G SORCS1 Missense_Mutation p.E704Q 0.08 tolerated(0.14) possibly_damaging(0.533) TCGA-56-8625-01 10 112262539 112262539 C T DUSP5 Missense_Mutation p.S147L 0.22 deleterious(0.03) benign(0.002) TCGA-56-8625-01 10 17107537 17107537 T C CUBN Missense_Mutation p.I1037V 0.17 tolerated(1) benign(0.022) TCGA-56-8625-01 10 17127635 17127635 T C CUBN Missense_Mutation p.S691G 0.21 deleterious(0.01) benign(0.411) TCGA-56-8625-01 10 24874818 24874818 C T ARHGAP21 Missense_Mutation p.R1467K 0.15 tolerated(0.24) benign(0.389) TCGA-56-8625-01 10 25160956 25160956 C A PRTFDC1 Missense_Mutation p.G126C 0.14 deleterious(0.02) benign(0.02) TCGA-56-8625-01 10 27400898 27400898 G C YME1L1 3'UTR 0.17 TCGA-56-8625-01 10 37451602 37451602 C A ANKRD30A Missense_Mutation p.F586L 0.14 tolerated(1) possibly_damaging(0.483) TCGA-56-8625-01 10 43654291 43654291 A G CSGALNACT2 Missense_Mutation p.M264V 0.38 tolerated(0.3) benign(0.001) TCGA-56-8625-01 10 48387841 48387841 C A RBP3 Nonsense_Mutation p.G1013* 0.40 TCGA-56-8625-01 10 55566749 55566749 T C PCDH15 Missense_Mutation p.I1546V 0.33 tolerated_low_confidence(1) benign(0.026) TCGA-56-8625-01 10 69881811 69881811 C T MYPN Nonsense_Mutation p.R206* 0.10 TCGA-56-8625-01 10 7774412 7774412 C G ITIH2 Missense_Mutation p.L587V 0.16 deleterious(0.02) benign(0.408) TCGA-56-8625-01 10 85981618 85981618 G T LRIT2 3'UTR 0.28 TCGA-56-8625-01 11 113103055 113103055 C A NCAM1 Silent p.T517T 0.20 TCGA-56-8625-01 11 118516182 118516182 C T PHLDB1 Missense_Mutation p.P1077L 0.12 tolerated(0.18) benign(0.005) TCGA-56-8625-01 11 119050774 119050774 C T NLRX1 Missense_Mutation p.H682Y 0.19 tolerated(0.12) probably_damaging(0.993) TCGA-56-8625-01 11 119216763 119216763 G A MFRP Silent p.I88I 0.43 TCGA-56-8625-01 11 123901121 123901121 G T OR10G8 Missense_Mutation p.R264S 0.22 tolerated(1) benign(0.297) TCGA-56-8625-01 11 134095100 134095100 G A VPS26B Silent p.K28K 0.20 TCGA-56-8625-01 11 14490257 14490257 T C COPB1 Silent p.A705A 0.17 TCGA-56-8625-01 11 1586976 1586976 C T DUSP8 Silent p.P27P 0.20 TCGA-56-8625-01 11 18636920 18636920 G A SPTY2D1 Missense_Mutation p.R301C 0.24 tolerated(0.09) benign(0.066) TCGA-56-8625-01 11 19256462 19256462 C A E2F8 Nonsense_Mutation p.E199* 0.11 TCGA-56-8625-01 11 36596257 36596257 C A RAG1 Missense_Mutation p.A468D 0.30 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-56-8625-01 11 40136479 40136479 G A LRRC4C Missense_Mutation p.S455L 0.11 deleterious(0) benign(0.017) TCGA-56-8625-01 11 43923244 43923244 G T ALKBH3 Missense_Mutation p.R213L 0.19 deleterious(0) probably_damaging(1) TCGA-56-8625-01 11 46400644 46400644 G A DGKZ Missense_Mutation p.R1029H 0.17 deleterious(0.04) probably_damaging(0.969) TCGA-56-8625-01 11 46765526 46765526 T C CKAP5 3'UTR 0.28 TCGA-56-8625-01 11 4825077 4825077 G T OR52R1 Silent p.P178P 0.15 TCGA-56-8625-01 11 55606944 55606944 C G OR5D16 Silent p.V239V 0.19 TCGA-56-8625-01 11 55653614 55653614 A G TRIM51 Missense_Mutation p.K143E 0.18 tolerated(0.11) benign(0.211) TCGA-56-8625-01 11 55659157 55659157 C T TRIM51 3'UTR 0.19 TCGA-56-8625-01 11 56185579 56185579 C A OR5R1 Missense_Mutation p.G44W 0.20 deleterious(0) probably_damaging(1) TCGA-56-8625-01 11 57093897 57093897 G T SSRP1 Nonsense_Mutation p.S705* 0.12 TCGA-56-8625-01 11 57571238 57571238 G T CTNND1 Missense_Mutation p.E522D 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-56-8625-01 11 57971168 57971168 C T OR1S2 Nonsense_Mutation p.W162* 0.16 TCGA-56-8625-01 11 58169947 58169947 C T OR5B3 Nonsense_Mutation p.W312* 0.14 TCGA-56-8625-01 11 59132760 59132760 G C OR5AN1 Missense_Mutation p.V277L 0.23 tolerated(0.06) benign(0.248) TCGA-56-8625-01 11 60064756 60064756 T A MS4A4A Silent p.P96P 0.20 TCGA-56-8625-01 11 6048002 6048002 C A OR56A1 Missense_Mutation p.Q311H 0.11 tolerated(0.52) benign(0.001) TCGA-56-8625-01 11 61669932 61669932 C T RAB3IL1 Silent p.S327S 0.27 TCGA-56-8625-01 11 61897857 61897857 G A INCENP Silent p.L286L 0.15 TCGA-56-8625-01 11 62384694 62384694 G A B3GAT3 Missense_Mutation p.S128F 0.18 deleterious(0) probably_damaging(0.924) TCGA-56-8625-01 11 6340297 6340297 T A PRKCDBP 3'UTR 0.18 TCGA-56-8625-01 11 64323537 64323537 C G SLC22A11 Silent p.L22L 0.23 TCGA-56-8625-01 11 64497259 64497259 G C RASGRP2 Missense_Mutation p.I522M 0.12 deleterious(0) probably_damaging(0.979) TCGA-56-8625-01 11 65271488 65271488 G A MALAT1 RNA 0.33 TCGA-56-8625-01 11 66999414 66999414 C G KDM2A Missense_Mutation p.L488V 0.11 deleterious(0.02) possibly_damaging(0.628) TCGA-56-8625-01 11 6789442 6789442 C A OR2AG2 Silent p.G249G 0.13 TCGA-56-8625-01 11 7061016 7061016 G C NLRP14 Missense_Mutation p.G121R 0.21 deleterious(0.02) benign(0.048) TCGA-56-8625-01 11 73362918 73362918 G C PLEKHB1 Missense_Mutation p.E111D 0.12 tolerated(0.26) benign(0.017) TCGA-56-8625-01 11 7530626 7530626 C A OLFML1 Intron 0.11 TCGA-56-8625-01 11 77387971 77387971 T C RSF1 Silent p.E1069E 0.14 TCGA-56-8625-01 11 77775382 77775382 G A THRSP 3'UTR 0.10 TCGA-56-8625-01 11 7960868 7960868 G C OR10A3 Missense_Mutation p.S67C 0.18 deleterious(0) probably_damaging(0.933) TCGA-56-8625-01 11 8118933 8118933 C T TUB Silent p.P337P 0.17 TCGA-56-8625-01 11 86161346 86161346 G A ME3 Silent p.G338G 0.10 TCGA-56-8625-01 11 86518870 86518870 C T PRSS23 Missense_Mutation p.S62F 0.17 deleterious(0.03) benign(0.193) TCGA-56-8625-01 11 86519522 86519522 C T PRSS23 Silent p.F279F 0.15 TCGA-56-8625-01 11 86519737 86519737 C T PRSS23 Missense_Mutation p.S351F 0.16 deleterious(0.05) possibly_damaging(0.532) TCGA-56-8625-01 11 93212437 93212437 T A SMCO4 Splice_Site 0.18 TCGA-56-8625-01 11 9435902 9435902 G C IPO7 Missense_Mutation p.D194H 0.14 tolerated(0.74) benign(0.001) TCGA-56-8625-01 12 101680113 101680113 T G UTP20 Missense_Mutation p.L114W 0.16 deleterious(0) probably_damaging(1) TCGA-56-8625-01 12 102056296 102056296 T C MYBPC1 Silent p.S706S 0.16 TCGA-56-8625-01 12 108589970 108589970 C T WSCD2 Missense_Mutation p.R121W 0.15 deleterious(0) possibly_damaging(0.724) TCGA-56-8625-01 12 109281256 109281256 C G DAO Silent p.L75L 0.18 TCGA-56-8625-01 12 109577849 109577849 C T ACACB Silent p.R213R 0.13 TCGA-56-8625-01 12 109605755 109605755 A T ACACB Missense_Mutation p.R281W 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-56-8625-01 12 110205819 110205819 G A FAM222A Missense_Mutation p.E29K 0.08 tolerated(0.26) benign(0.113) TCGA-56-8625-01 12 110475254 110475255 AG - ANKRD13A Frame_Shift_Del p.A557Hfs*21 0.12 TCGA-56-8625-01 12 111746323 111746323 C A CUX2 Silent p.A417A 0.25 TCGA-56-8625-01 12 111785783 111785783 G T CUX2 Missense_Mutation p.R1372L 0.17 deleterious_low_confidence(0.03) benign(0.106) TCGA-56-8625-01 12 113346585 113346585 G C OAS1 Missense_Mutation p.G142A 0.16 tolerated(0.38) benign(0.062) TCGA-56-8625-01 12 133732361 133732361 G T ZNF10 Missense_Mutation p.A177S 0.18 tolerated(1) benign(0.001) TCGA-56-8625-01 12 20868183 20868183 G A SLCO1C1 Missense_Mutation p.D214N 0.21 deleterious(0.02) probably_damaging(1) TCGA-56-8625-01 12 27175543 27175543 G T MED21 Missense_Mutation p.A11S 0.08 tolerated(0.16) benign(0.086) TCGA-56-8625-01 12 3931142 3931142 C T PARP11 Missense_Mutation p.E149K 0.07 deleterious(0) probably_damaging(0.994) TCGA-56-8625-01 12 49463533 49463533 G C RHEBL1 Silent p.L12L 0.07 TCGA-56-8625-01 12 49937248 49937248 C T KCNH3 Missense_Mutation p.A257V 0.18 tolerated(0.15) benign(0.01) TCGA-56-8625-01 12 52794404 52794404 G A KRT82 Silent p.D228D 0.19 TCGA-56-8625-01 12 53675382 53675382 G A ESPL1 Missense_Mutation p.R864Q 0.15 tolerated(0.1) benign(0.003) TCGA-56-8625-01 12 54902242 54902242 C G NCKAP1L Missense_Mutation p.L145V 0.21 tolerated(0.1) possibly_damaging(0.856) TCGA-56-8625-01 12 54903727 54903727 C T NCKAP1L Silent p.I231I 0.21 TCGA-56-8625-01 12 56078930 56078930 C T ITGA7 Missense_Mutation p.R1113Q 0.17 tolerated_low_confidence(0.07) benign(0.421) TCGA-56-8625-01 12 56568529 56568529 A G SMARCC2 Missense_Mutation p.F468L 0.22 deleterious(0.02) benign(0.418) TCGA-56-8625-01 12 56744636 56744636 C G STAT2 Silent p.L357L 0.22 TCGA-56-8625-01 12 64814188 64814188 T C XPOT Missense_Mutation p.C244R 0.14 deleterious(0) probably_damaging(0.979) TCGA-56-8625-01 12 6933695 6933695 C A GPR162 Silent p.R211R 0.54 TCGA-56-8625-01 12 6958876 6958876 C G CDCA3 Missense_Mutation p.E133Q 0.11 tolerated(0.08) benign(0.3) TCGA-56-8625-01 12 6959757 6959757 C T CDCA3 Missense_Mutation p.E42K 0.13 deleterious(0.02) possibly_damaging(0.906) TCGA-56-8625-01 12 70049169 70049169 C T BEST3 Missense_Mutation p.E509K 0.18 deleterious_low_confidence(0.04) benign(0.004) TCGA-56-8625-01 12 70953250 70953250 G T PTPRB Missense_Mutation p.N1529K 0.15 tolerated(0.22) benign(0.096) TCGA-56-8625-01 12 73014931 73014931 G C TRHDE Missense_Mutation p.G793A 0.23 tolerated(0.14) probably_damaging(0.996) TCGA-56-8625-01 12 77220739 77220739 G T ZDHHC17 Missense_Mutation p.V317F 0.24 deleterious(0.02) benign(0.193) TCGA-56-8625-01 12 78542679 78542679 A T NAV3 Missense_Mutation p.T1589S 0.16 deleterious(0.02) probably_damaging(0.998) TCGA-56-8625-01 12 80749668 80749668 G C OTOGL Missense_Mutation p.E1907Q 0.14 tolerated(0.1) possibly_damaging(0.751) TCGA-56-8625-01 12 83081328 83081328 C A TMTC2 5'UTR 0.44 TCGA-56-8625-01 13 32759231 32759231 G C FRY Missense_Mutation p.D1089H 0.28 deleterious(0) probably_damaging(0.989) TCGA-56-8625-01 13 40175076 40175076 C A LHFP Missense_Mutation p.C93F 0.21 deleterious(0) probably_damaging(0.998) TCGA-56-8625-01 13 47409683 47409683 G T HTR2A Silent p.V235V 0.20 TCGA-56-8625-01 13 48941648 48941648 C T RB1 Nonsense_Mutation p.R320* 0.18 TCGA-56-8625-01 13 61102520 61102520 G T TDRD3 Missense_Mutation p.Q387H 0.30 tolerated(0.07) benign(0.059) TCGA-56-8625-01 13 70514369 70514369 C A KLHL1 Splice_Site p.X273_splice 0.47 TCGA-56-8625-01 14 100612930 100612930 G C DEGS2 3'UTR 0.23 TCGA-56-8625-01 14 103174865 103174865 A G RCOR1 Missense_Mutation p.K242E 0.21 deleterious(0) probably_damaging(0.994) TCGA-56-8625-01 14 105407438 105407438 G A AHNAK2 Missense_Mutation p.L4784F 0.17 probably_damaging(0.952) TCGA-56-8625-01 14 105417963 105417963 C T AHNAK2 Silent p.L1275L 0.18 TCGA-56-8625-01 14 106667699 106667699 C A IGHV3-20 Missense_Mutation p.G78V 0.20 tolerated_low_confidence(0.15) benign(0.003) TCGA-56-8625-01 14 106667700 106667700 C A IGHV3-20 Missense_Mutation p.G78C 0.20 tolerated_low_confidence(0.05) benign(0.002) TCGA-56-8625-01 14 22090519 22090519 A T TRAV1-1 Missense_Mutation p.Q42L 0.20 tolerated(0.06) benign(0.187) TCGA-56-8625-01 14 22102490 22102490 C T OR10G2 Missense_Mutation p.R170H 0.17 tolerated(0.3) benign(0.022) TCGA-56-8625-01 14 23549502 23549502 C G ACIN1 Missense_Mutation p.E406Q 0.07 probably_damaging(0.99) TCGA-56-8625-01 14 24800263 24800263 C T ADCY4 Missense_Mutation p.M297I 0.23 deleterious(0.02) probably_damaging(0.989) TCGA-56-8625-01 14 24879335 24879335 T C NYNRIN Missense_Mutation p.F779L 0.12 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-56-8625-01 14 35592532 35592538 TTATGTC ATGTG KIAA0391 Frame_Shift_Del p.Y28Cfs*21 0.23 TCGA-56-8625-01 14 36096678 36096678 C A RALGAPA1 Missense_Mutation p.V1653L 0.14 tolerated(0.4) benign(0.012) TCGA-56-8625-01 14 50792415 50792415 C T ATP5S Silent p.L208L 0.17 TCGA-56-8625-01 14 60212988 60212988 T A RTN1 Silent p.P151P 0.14 TCGA-56-8625-01 14 61346528 61346528 G A MNAT1 Missense_Mutation p.E262K 0.15 tolerated(0.64) benign(0.075) TCGA-56-8625-01 14 64518590 64518590 G C SYNE2 Silent p.L2653L 0.19 TCGA-56-8625-01 14 65258479 65258479 C T SPTB Missense_Mutation p.R921H 0.26 tolerated(0.1) benign(0.052) TCGA-56-8625-01 14 89110776 89110776 C A EML5 Splice_Site p.X1369_splice 0.31 TCGA-56-8625-01 14 93043734 93043734 G A RIN3 Silent p.S93S 0.17 TCGA-56-8625-01 15 100331236 100331236 C G AC090825.1 5'Flank 0.19 TCGA-56-8625-01 15 24923251 24923251 C A NPAP1 Missense_Mutation p.T746N 0.22 tolerated(0.14) benign(0.327) TCGA-56-8625-01 15 25321096 25321096 A C SNORD116-11 RNA 0.17 TCGA-56-8625-01 15 25475819 25475819 G T SNORD115-33 5'Flank 0.24 TCGA-56-8625-01 15 42110391 42110391 G C MAPKBP1 Splice_Site p.X667_splice 0.25 TCGA-56-8625-01 15 50158645 50158645 G C ATP8B4 Missense_Mutation p.H1022D 0.14 deleterious(0.03) possibly_damaging(0.762) TCGA-56-8625-01 15 54015106 54015106 C G WDR72 Splice_Site p.X52_splice 0.16 TCGA-56-8625-01 15 55652658 55652658 A G CCPG1 Missense_Mutation p.L438P 0.16 deleterious(0) probably_damaging(1) TCGA-56-8625-01 15 65257784 65257784 C T SPG21 Silent p.A229A 0.14 TCGA-56-8625-01 15 68118509 68118509 G C SKOR1 Missense_Mutation p.E301Q 0.22 tolerated_low_confidence(0.17) possibly_damaging(0.711) TCGA-56-8625-01 15 69548500 69548500 G T GLCE Missense_Mutation p.G119W 0.18 deleterious(0.02) probably_damaging(0.936) TCGA-56-8625-01 15 69714378 69714378 A G KIF23 Missense_Mutation p.M122V 0.18 deleterious(0) possibly_damaging(0.895) TCGA-56-8625-01 15 72191186 72191186 G - MYO9A Frame_Shift_Del p.R1220Vfs*8 0.13 TCGA-56-8625-01 15 74467375 74467375 C A ISLR Missense_Mutation p.A59D 0.09 deleterious(0) probably_damaging(0.952) TCGA-56-8625-01 15 80191381 80191381 G C ST20 Missense_Mutation p.F44L 0.11 tolerated_low_confidence(0.09) benign(0.294) TCGA-56-8625-01 15 82512143 82512143 C A EFTUD1 Silent p.V487V 0.15 TCGA-56-8625-01 16 11154878 11154878 G C CLEC16A Silent p.L705L 0.06 TCGA-56-8625-01 16 1836630 1836630 C G NUBP2 Missense_Mutation p.L37V 0.22 deleterious(0.01) possibly_damaging(0.808) TCGA-56-8625-01 16 20410609 20410609 C A PDILT Missense_Mutation p.W5L 0.13 tolerated_low_confidence(0.06) benign(0.412) TCGA-56-8625-01 16 27476849 27476849 T G GTF3C1 Missense_Mutation p.E1696A 0.20 tolerated(0.11) benign(0.021) TCGA-56-8625-01 16 2882064 2882064 G C ZG16B Missense_Mutation p.K177N 0.18 tolerated(0.07) probably_damaging(0.978) TCGA-56-8625-01 16 28905508 28905508 C G ATP2A1 Missense_Mutation p.I376M 0.19 tolerated(0.13) benign(0.153) TCGA-56-8625-01 16 30732231 30732231 C T SRCAP Missense_Mutation p.P1062L 0.16 unknown(0) TCGA-56-8625-01 16 31123201 31123201 G A BCKDK Missense_Mutation p.R316H 0.27 deleterious(0) possibly_damaging(0.773) TCGA-56-8625-01 16 3299706 3299706 G T MEFV Missense_Mutation p.R329S 0.12 deleterious(0.02) benign(0.031) TCGA-56-8625-01 16 34739787 34739787 T G RP11-80F22.15 Splice_Site 0.14 TCGA-56-8625-01 16 49412471 49412471 G T C16orf78 Missense_Mutation p.G121C 0.17 deleterious(0.01) probably_damaging(0.988) TCGA-56-8625-01 16 53499461 53499461 C G RBL2 Missense_Mutation p.P604A 0.29 tolerated(0.74) benign(0.062) TCGA-56-8625-01 16 54965312 54965312 G T IRX5 Missense_Mutation p.G68C 0.26 deleterious(0.02) probably_damaging(0.956) TCGA-56-8625-01 16 57741586 57741586 G A CCDC135 Missense_Mutation p.C358Y 0.21 deleterious(0) probably_damaging(0.997) TCGA-56-8625-01 16 58073877 58073877 A T MMP15 Missense_Mutation p.Q180L 0.18 deleterious(0.01) benign(0.155) TCGA-56-8625-01 16 58073905 58073905 G C MMP15 Silent p.L189L 0.19 TCGA-56-8625-01 16 61891031 61891031 G A CDH8 Missense_Mutation p.P220L 0.22 deleterious(0.01) possibly_damaging(0.86) TCGA-56-8625-01 16 67034823 67034823 G A CES4A Missense_Mutation p.D156N 0.26 tolerated(0.1) benign(0.093) TCGA-56-8625-01 16 67100645 67100645 G C CBFB Missense_Mutation p.D115H 0.32 deleterious(0) probably_damaging(0.964) TCGA-56-8625-01 16 716786 716786 G A WDR90 Silent p.Q1666Q 0.15 TCGA-56-8625-01 16 72923797 72923797 T A ZFHX3 Missense_Mutation p.N1094I 0.12 possibly_damaging(0.571) TCGA-56-8625-01 16 75204099 75204099 G T ZFP1 Missense_Mutation p.R364M 0.17 deleterious(0.02) possibly_damaging(0.905) TCGA-56-8625-01 16 84203767 84203767 G A DNAAF1 Missense_Mutation p.E445K 0.21 tolerated(0.21) benign(0.04) TCGA-56-8625-01 16 88061222 88061222 G A BANP Silent p.R335R 0.19 TCGA-56-8625-01 16 90103784 90103784 G C GAS8 Missense_Mutation p.E301Q 0.12 tolerated(0.11) benign(0.173) TCGA-56-8625-01 17 15215749 15215749 G A TEKT3 Missense_Mutation p.R310C 0.24 tolerated(0.31) benign(0.047) TCGA-56-8625-01 17 28004698 28004698 C T SSH2 Missense_Mutation p.G154S 0.11 deleterious(0.01) probably_damaging(1) TCGA-56-8625-01 17 29113018 29113018 C G CRLF3 Missense_Mutation p.D331H 0.28 deleterious(0) probably_damaging(0.948) TCGA-56-8625-01 17 34249614 34249614 C T RDM1 Missense_Mutation p.D212N 0.27 tolerated(0.22) benign(0.076) TCGA-56-8625-01 17 37627863 37627863 C A CDK12 Missense_Mutation p.S593Y 0.22 possibly_damaging(0.795) TCGA-56-8625-01 17 3773178 3773178 C A CAMKK1 Nonsense_Mutation p.E415* 0.22 TCGA-56-8625-01 17 38340572 38340572 G C RAPGEFL1 Missense_Mutation p.E30Q 0.21 tolerated(0.07) probably_damaging(0.997) TCGA-56-8625-01 17 39034618 39034618 C T KRT20 Splice_Site p.X307_splice 0.15 TCGA-56-8625-01 17 4269661 4269661 G A UBE2G1 5'UTR 0.29 TCGA-56-8625-01 17 43321328 43321328 C T FMNL1 Missense_Mutation p.P795L 0.22 tolerated(0.15) possibly_damaging(0.806) TCGA-56-8625-01 17 45299064 45299064 G A MYL4 Missense_Mutation p.M110I 0.29 tolerated(0.52) benign(0.101) TCGA-56-8625-01 17 58524824 58524824 A G APPBP2 3'UTR 0.50 TCGA-56-8625-01 17 62036788 62036788 C T SCN4A Missense_Mutation p.G619D 0.43 deleterious(0) probably_damaging(0.998) TCGA-56-8625-01 17 62291362 62291362 C A TEX2 Missense_Mutation p.K72N 0.44 deleterious_low_confidence(0.02) probably_damaging(0.966) TCGA-56-8625-01 17 73951966 73951966 C A ACOX1 Nonsense_Mutation p.G201* 0.31 TCGA-56-8625-01 17 74878391 74878391 G C MGAT5B Intron 0.19 TCGA-56-8625-01 17 7578206 7578206 T C TP53 Missense_Mutation p.S215G 0.20 deleterious(0.01) probably_damaging(1) TCGA-56-8625-01 17 79225350 79225350 G A SLC38A10 Missense_Mutation p.R670C 0.11 deleterious(0) possibly_damaging(0.836) TCGA-56-8625-01 18 12963340 12963340 G T SEH1L Missense_Mutation p.S164I 0.17 deleterious(0.03) benign(0.187) TCGA-56-8625-01 18 24436217 24436217 C G AQP4 Missense_Mutation p.K310N 0.12 deleterious_low_confidence(0) possibly_damaging(0.848) TCGA-56-8625-01 18 29116259 29116259 C G DSG2 Missense_Mutation p.I506M 0.13 deleterious(0.01) benign(0.299) TCGA-56-8625-01 18 33785106 33785106 C T MOCOS Missense_Mutation p.S362F 0.14 deleterious(0.01) possibly_damaging(0.701) TCGA-56-8625-01 18 40853613 40853613 G C SYT4 Missense_Mutation p.L261V 0.23 deleterious(0.03) probably_damaging(0.99) TCGA-56-8625-01 18 47788484 47788484 G A CCDC11 Missense_Mutation p.R59W 0.20 tolerated(0.08) benign(0.017) TCGA-56-8625-01 18 48450467 48450467 G T ME2 Splice_Site p.X353_splice 0.10 TCGA-56-8625-01 18 54424249 54424249 G A WDR7 Missense_Mutation p.A809T 0.14 deleterious(0.02) possibly_damaging(0.54) TCGA-56-8625-01 18 581007 581007 C A CETN1 3'UTR 0.20 TCGA-56-8625-01 18 64211991 64211991 G A CDH19 Missense_Mutation p.H309Y 0.20 tolerated(0.07) benign(0.169) TCGA-56-8625-01 18 65178878 65178878 T A DSEL Nonsense_Mutation p.R1000* 0.18 TCGA-56-8625-01 18 70450916 70450916 C A NETO1 Nonsense_Mutation p.E289* 0.21 TCGA-56-8625-01 18 76754397 76754397 G A SALL3 Silent p.E802E 0.20 TCGA-56-8625-01 19 10084476 10084476 C T COL5A3 Missense_Mutation p.G1190R 0.19 probably_damaging(1) TCGA-56-8625-01 19 10670312 10670312 C G KRI1 Missense_Mutation p.E340Q 0.15 deleterious(0.03) benign(0.387) TCGA-56-8625-01 19 11657704 11657704 G A CNN1 Missense_Mutation p.D104N 0.16 deleterious(0.03) probably_damaging(0.993) TCGA-56-8625-01 19 12800979 12800979 C A FBXW9 Intron 0.27 TCGA-56-8625-01 19 15989667 15989667 G A CYP4F2 Missense_Mutation p.P493S 0.19 deleterious(0.03) benign(0.279) TCGA-56-8625-01 19 16000391 16000391 G T CYP4F2 Missense_Mutation p.Q254K 0.14 tolerated(0.15) benign(0.001) TCGA-56-8625-01 19 18279301 18279301 G C PIK3R2 Missense_Mutation p.G585R 0.14 deleterious(0) probably_damaging(0.985) TCGA-56-8625-01 19 18898381 18898381 G A COMP Missense_Mutation p.R352W 0.15 deleterious(0.01) possibly_damaging(0.453) TCGA-56-8625-01 19 2191194 2191194 G A DOT1L Missense_Mutation p.E150K 0.20 deleterious(0.04) probably_damaging(0.924) TCGA-56-8625-01 19 32844763 32844763 G A ZNF507 Missense_Mutation p.E343K 0.18 tolerated(0.71) possibly_damaging(0.899) TCGA-56-8625-01 19 33424356 33424356 C - CEP89 Splice_Site p.X296_splice 0.24 TCGA-56-8625-01 19 35761678 35761678 C T USF2 Missense_Mutation p.T213M 0.13 deleterious(0) possibly_damaging(0.891) TCGA-56-8625-01 19 36271188 36271188 G T ARHGAP33 Missense_Mutation p.V193L 0.17 deleterious_low_confidence(0.03) benign(0.198) TCGA-56-8625-01 19 36333122 36333122 G T NPHS1 Missense_Mutation p.T856N 0.10 deleterious(0.01) probably_damaging(0.944) TCGA-56-8625-01 19 36964323 36964323 G C ZNF566 Missense_Mutation p.S16C 0.15 deleterious(0) probably_damaging(0.998) TCGA-56-8625-01 19 37005826 37005826 G A ZNF260 Silent p.H105H 0.15 TCGA-56-8625-01 19 39002749 39002749 C T RYR1 Silent p.I3070I 0.22 TCGA-56-8625-01 19 39232500 39232500 G T CAPN12 Silent p.P159P 0.10 TCGA-56-8625-01 19 39336582 39336582 T C HNRNPL Missense_Mutation p.I179V 0.21 deleterious(0.03) possibly_damaging(0.79) TCGA-56-8625-01 19 39361501 39361501 C A RINL Nonsense_Mutation p.G245* 0.19 TCGA-56-8625-01 19 41822566 41822566 G A CCDC97 Silent p.L108L 0.15 TCGA-56-8625-01 19 41822591 41822591 G A CCDC97 Missense_Mutation p.E117K 0.24 tolerated(0.13) possibly_damaging(0.87) TCGA-56-8625-01 19 43093625 43093625 G A CEACAM8 Silent p.V229V 0.18 TCGA-56-8625-01 19 43857890 43857890 C A CD177 Silent p.A8A 0.18 TCGA-56-8625-01 19 43968598 43968598 G A LYPD3 Silent p.A30A 0.24 TCGA-56-8625-01 19 43969651 43969651 G A LYPD3 Missense_Mutation p.R25C 0.17 tolerated(0.17) benign(0.001) TCGA-56-8625-01 19 44352366 44352366 C T ZNF283 Missense_Mutation p.T538I 0.26 deleterious(0.03) probably_damaging(0.949) TCGA-56-8625-01 19 44377967 44377967 A T ZNF404 Nonsense_Mutation p.C133* 0.19 TCGA-56-8625-01 19 44777471 44777471 C A ZNF233 Missense_Mutation p.H220N 0.24 tolerated(0.09) benign(0.026) TCGA-56-8625-01 19 45853978 45853978 G A KLC3 Missense_Mutation p.R451Q 0.13 tolerated(0.49) benign(0.09) TCGA-56-8625-01 19 48558172 48558172 C T PLA2G4C Silent p.V474V 0.22 TCGA-56-8625-01 19 54687464 54687464 C A MBOAT7 Missense_Mutation p.D145Y 0.18 deleterious(0.03) benign(0.011) TCGA-56-8625-01 19 54745454 54745454 G A LILRA6 Missense_Mutation p.S219L 0.20 deleterious(0.04) benign(0.135) TCGA-56-8625-01 19 55106389 55106389 C A LILRA1 Silent p.P110P 0.19 TCGA-56-8625-01 19 55697699 55697699 G T PTPRH Missense_Mutation p.A891E 0.15 probably_damaging(1) TCGA-56-8625-01 19 56424493 56424493 C T NLRP13 Silent p.T230T 0.18 TCGA-56-8625-01 19 5744497 5744497 G A CATSPERD Silent p.A211A 0.12 TCGA-56-8625-01 19 6427163 6427163 C G SLC25A41 Missense_Mutation p.Q297H 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-56-8625-01 19 7707916 7707916 C T STXBP2 Silent p.Y336Y 0.17 TCGA-56-8625-01 19 7913954 7913954 G A EVI5L Missense_Mutation p.A159T 0.27 deleterious(0.02) probably_damaging(1) TCGA-56-8625-01 19 9266682 9266682 A G ZNF317 5'UTR 0.10 TCGA-56-8625-01 1 107979286 107979286 G A NTNG1 Splice_Site p.X419_splice 0.24 TCGA-56-8625-01 1 11118868 11118868 C T SRM Missense_Mutation p.E124K 0.18 deleterious(0) probably_damaging(0.92) TCGA-56-8625-01 1 111490859 111490859 G T LRIF1 Missense_Mutation p.H678N 0.15 tolerated(0.18) benign(0.003) TCGA-56-8625-01 1 111862949 111862949 C T CHIA Missense_Mutation p.A431V 0.14 tolerated(0.21) benign(0.19) TCGA-56-8625-01 1 150936165 150936165 C A SETDB1 Missense_Mutation p.S1206Y 0.15 tolerated(0.09) possibly_damaging(0.767) TCGA-56-8625-01 1 151491171 151491171 G T CGN Missense_Mutation p.G59V 0.12 deleterious(0) probably_damaging(1) TCGA-56-8625-01 1 157514254 157514254 C A FCRL5 Missense_Mutation p.Q214H 0.17 deleterious(0.01) possibly_damaging(0.869) TCGA-56-8625-01 1 158592800 158592800 C T SPTA1 Silent p.L2031L 0.14 TCGA-56-8625-01 1 159904596 159904596 C T IGSF9 Silent p.V230V 0.22 TCGA-56-8625-01 1 160145928 160145928 G T ATP1A4 Silent p.L786L 0.19 TCGA-56-8625-01 1 160388806 160388806 G T VANGL2 Silent p.G69G 0.08 TCGA-56-8625-01 1 163044313 163044313 C T RGS4 Missense_Mutation p.S291L 0.22 deleterious_low_confidence(0.03) benign(0.09) TCGA-56-8625-01 1 170508453 170508453 A T GORAB Missense_Mutation p.D80V 0.24 deleterious(0.03) benign(0.045) TCGA-56-8625-01 1 173505041 173505041 C T SLC9C2 Nonsense_Mutation p.W568* 0.28 TCGA-56-8625-01 1 180235528 180235528 C A LHX4 Missense_Mutation p.R84S 0.17 deleterious(0) benign(0.057) TCGA-56-8625-01 1 185159730 185159730 C T SWT1 Silent p.L493L 0.12 TCGA-56-8625-01 1 186282112 186282112 G A TPR 3'UTR 0.33 TCGA-56-8625-01 1 190250870 190250870 G T BRINP3 Missense_Mutation p.R83S 0.24 deleterious(0) possibly_damaging(0.573) TCGA-56-8625-01 1 190423909 190423909 G C BRINP3 Missense_Mutation p.Q38E 0.28 tolerated_low_confidence(0.17) benign(0) TCGA-56-8625-01 1 205041261 205041261 C T CNTN2 Missense_Mutation p.P911S 0.21 deleterious(0) possibly_damaging(0.779) TCGA-56-8625-01 1 205770108 205770108 C A SLC41A1 Missense_Mutation p.M151I 0.16 deleterious(0) possibly_damaging(0.901) TCGA-56-8625-01 1 205770161 205770161 C G SLC41A1 Missense_Mutation p.E134Q 0.09 deleterious(0.02) benign(0.252) TCGA-56-8625-01 1 209800796 209800796 C G LAMB3 Missense_Mutation p.A473P 0.21 tolerated(0.14) possibly_damaging(0.475) TCGA-56-8625-01 1 209800896 209800896 C G LAMB3 Silent p.R439R 0.11 TCGA-56-8625-01 1 216074240 216074240 A G USH2A Silent p.D2436D 0.17 TCGA-56-8625-01 1 220324586 220324589 GTAA - RAB3GAP2 3'UTR 0.15 TCGA-56-8625-01 1 223179119 223179119 A G DISP1 Silent p.P1460P 0.16 TCGA-56-8625-01 1 223284022 223284022 G T TLR5 Missense_Mutation p.N784K 0.20 tolerated(1) benign(0.002) TCGA-56-8625-01 1 223947030 223947030 G T CAPN2 Missense_Mutation p.R459M 0.20 tolerated(0.17) possibly_damaging(0.534) TCGA-56-8625-01 1 226736738 226736738 G T C1orf95 Missense_Mutation p.A45S 0.17 deleterious(0.01) probably_damaging(0.955) TCGA-56-8625-01 1 227935790 227935790 G C SNAP47 Missense_Mutation p.R163P 0.15 deleterious(0.01) probably_damaging(0.916) TCGA-56-8625-01 1 232600712 232600712 C A SIPA1L2 Missense_Mutation p.R898S 0.13 tolerated(0.13) probably_damaging(0.997) TCGA-56-8625-01 1 232650269 232650269 C T SIPA1L2 Missense_Mutation p.D273N 0.21 tolerated(0.13) benign(0.242) TCGA-56-8625-01 1 242042187 242042187 G T EXO1 Missense_Mutation p.V551F 0.11 tolerated(0.05) benign(0.001) TCGA-56-8625-01 1 247921079 247921079 G T OR1C1 Silent p.P210P 0.23 TCGA-56-8625-01 1 248128741 248128741 C A OR2AK2 Silent p.G36G 0.16 TCGA-56-8625-01 1 248263048 248263048 C G OR2L13 Missense_Mutation p.A124G 0.13 deleterious(0) probably_damaging(0.933) TCGA-56-8625-01 1 248487774 248487774 C A OR2M7 Missense_Mutation p.A33S 0.15 tolerated(0.46) benign(0.002) TCGA-56-8625-01 1 33252586 33252586 C T YARS Missense_Mutation p.G259R 0.14 deleterious(0) probably_damaging(1) TCGA-56-8625-01 1 35452887 35452887 C G ZMYM6 Missense_Mutation p.E1266Q 0.21 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-56-8625-01 1 39930776 39930776 G A MACF1 Intron 0.12 TCGA-56-8625-01 1 40092513 40092513 C T HEYL Missense_Mutation p.R218Q 0.20 tolerated(0.12) probably_damaging(0.997) TCGA-56-8625-01 1 40961578 40961578 T C ZFP69 Silent p.Y476Y 0.16 TCGA-56-8625-01 1 43812539 43812539 G A MPL Silent p.S414S 0.23 TCGA-56-8625-01 1 47046263 47046263 C G MKNK1 Missense_Mutation p.G58A 0.14 deleterious(0) probably_damaging(1) TCGA-56-8625-01 1 47746533 47746533 C G STIL Missense_Mutation p.D533H 0.18 deleterious(0.04) possibly_damaging(0.734) TCGA-56-8625-01 1 91182664 91182664 C T BARHL2 Missense_Mutation p.G30E 0.21 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-56-8625-01 1 94337665 94337665 T C DNTTIP2 Missense_Mutation p.K677R 0.21 deleterious(0) probably_damaging(0.996) TCGA-56-8625-01 1 94354493 94354493 C G GCLM 3'UTR 0.15 TCGA-56-8625-01 20 17931014 17931014 C G SNX5 Missense_Mutation p.E212D 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-56-8625-01 20 18453545 18453545 G A POLR3F Silent p.Q80Q 0.12 TCGA-56-8625-01 20 18474640 18474640 G A RBBP9 Silent p.I70I 0.12 TCGA-56-8625-01 20 2378636 2378636 A G TGM6 Missense_Mutation p.T206A 0.10 tolerated(0.13) benign(0.01) TCGA-56-8625-01 20 25394484 25394484 C T GINS1 Missense_Mutation p.S45F 0.11 deleterious(0.04) benign(0.152) TCGA-56-8625-01 20 30954244 30954244 G A ASXL1 Missense_Mutation p.E39K 0.17 deleterious(0) probably_damaging(0.991) TCGA-56-8625-01 20 30954250 30954250 G A ASXL1 Missense_Mutation p.E41K 0.17 tolerated(0.09) probably_damaging(0.993) TCGA-56-8625-01 20 32212757 32212757 C G CBFA2T2 Missense_Mutation p.H303D 0.23 deleterious(0) benign(0.382) TCGA-56-8625-01 20 34092674 34092674 G T CEP250 Silent p.L2159L 0.28 TCGA-56-8625-01 20 35651061 35651061 T A RBL1 Missense_Mutation p.M851L 0.11 deleterious(0.01) benign(0.039) TCGA-56-8625-01 20 60937564 60937564 T C LAMA5 Silent p.A114A 0.13 TCGA-56-8625-01 20 61341036 61341036 G A NTSR1 Silent p.V159V 0.28 TCGA-56-8625-01 20 62194339 62194339 C A HELZ2 Nonsense_Mutation p.E1946* 0.33 TCGA-56-8625-01 20 76786 76786 C T DEFB125 Nonsense_Mutation p.R67* 0.12 TCGA-56-8625-01 20 947902 947902 C T RSPO4 Silent p.K108K 0.18 TCGA-56-8625-01 21 18931438 18931438 C T CXADR Missense_Mutation p.S187L 0.06 tolerated(0.08) benign(0.005) TCGA-56-8625-01 21 27130366 27130366 G T GABPA Missense_Mutation p.W200L 0.16 deleterious(0) probably_damaging(0.999) TCGA-56-8625-01 21 43912886 43912886 C T RSPH1 Missense_Mutation p.D86N 0.22 deleterious(0) probably_damaging(1) TCGA-56-8625-01 21 45212563 45212563 G A RRP1 Missense_Mutation p.G76E 0.15 deleterious(0) probably_damaging(0.948) TCGA-56-8625-01 21 45994838 45994838 C G KRTAP10-4 Silent p.L401L 0.10 TCGA-56-8625-01 21 48083429 48083429 G A PRMT2 Nonsense_Mutation p.W411* 0.21 TCGA-56-8625-01 22 17117968 17117968 C - TPTEP1 RNA 0.12 TCGA-56-8625-01 22 21988758 21988758 C A CCDC116 Silent p.R174R 0.17 TCGA-56-8625-01 22 22868423 22868423 C A ZNF280A Missense_Mutation p.S511I 0.19 deleterious(0.02) benign(0.202) TCGA-56-8625-01 22 23742452 23742452 A G ZDHHC8P1 RNA 0.22 TCGA-56-8625-01 22 32894377 32894377 C A FBXO7 Missense_Mutation p.P477T 0.20 deleterious(0) probably_damaging(0.996) TCGA-56-8625-01 22 37697021 37697021 C T CYTH4 Nonsense_Mutation p.R170* 0.26 TCGA-56-8625-01 22 38155424 38155424 C T TRIOBP Intron 0.21 TCGA-56-8625-01 22 38875652 38875652 C A KDELR3 Missense_Mutation p.R83S 0.21 deleterious(0.03) benign(0.246) TCGA-56-8625-01 22 42154456 42154456 G A MEI1 Missense_Mutation p.R680H 0.20 tolerated(0.53) benign(0.005) TCGA-56-8625-01 22 42415716 42415716 G C WBP2NL Missense_Mutation p.M74I 0.17 deleterious(0) possibly_damaging(0.817) TCGA-56-8625-01 22 44286965 44286965 C T PNPLA5 Missense_Mutation p.A135T 0.13 tolerated(0.69) benign(0.272) TCGA-56-8625-01 22 44602296 44602296 C A PARVG Missense_Mutation p.A329D 0.14 tolerated_low_confidence(0.37) benign(0.014) TCGA-56-8625-01 22 46654881 46654881 A T PKDREJ Missense_Mutation p.L1447M 0.11 deleterious(0.01) probably_damaging(0.974) TCGA-56-8625-01 22 50167855 50167855 C T BRD1 3'UTR 0.16 TCGA-56-8625-01 22 50854518 50854518 C A PPP6R2 Intron 0.24 TCGA-56-8625-01 22 50941794 50941794 C T LMF2 3'UTR 0.20 TCGA-56-8625-01 22 50943124 50943124 C G LMF2 Silent p.L490L 0.12 TCGA-56-8625-01 22 51065261 51065261 C A ARSA Splice_Site p.X228_splice 0.17 TCGA-56-8625-01 2 103299843 103299843 C G SLC9A2 Missense_Mutation p.I376M 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-56-8625-01 2 107423096 107423096 T C ST6GAL2 3'UTR 0.16 TCGA-56-8625-01 2 107459953 107459953 C A ST6GAL2 Missense_Mutation p.G161W 0.18 possibly_damaging(0.685) TCGA-56-8625-01 2 118854375 118854376 - G INSIG2 Frame_Shift_Ins 0.12 TCGA-56-8625-01 2 120677691 120677691 G A PTPN4 Missense_Mutation p.R292K 0.18 tolerated(0.22) probably_damaging(0.994) TCGA-56-8625-01 2 132021806 132021806 G A POTEE Silent p.E926E 0.06 TCGA-56-8625-01 2 139428706 139428706 G T NXPH2 Missense_Mutation p.T194K 0.14 deleterious(0) probably_damaging(0.972) TCGA-56-8625-01 2 141214112 141214112 G - LRP1B Frame_Shift_Del p.P3292Lfs*121 0.14 TCGA-56-8625-01 2 141777604 141777604 G T LRP1B Silent p.G619G 0.16 TCGA-56-8625-01 2 15557806 15557806 C T NBAS Missense_Mutation p.G870R 0.10 deleterious(0) probably_damaging(0.968) TCGA-56-8625-01 2 165584495 165584495 C T COBLL1 Silent p.A215A 0.25 TCGA-56-8625-01 2 169783770 169783770 C T ABCB11 Missense_Mutation p.D1172N 0.19 deleterious(0) probably_damaging(0.952) TCGA-56-8625-01 2 177036245 177036245 G C HOXD3 Missense_Mutation p.G181A 0.16 tolerated(0.33) possibly_damaging(0.794) TCGA-56-8625-01 2 178482909 178482909 C A TTC30A Missense_Mutation p.C174F 0.14 tolerated(0.59) benign(0.353) TCGA-56-8625-01 2 179397104 179397104 C G TTN Silent p.L34746L 0.23 TCGA-56-8625-01 2 17947870 17947870 A G GEN1 Missense_Mutation p.M184V 0.10 tolerated(0.12) benign(0.034) TCGA-56-8625-01 2 179484603 179484603 C G TTN Missense_Mutation p.E15481Q 0.13 TCGA-56-8625-01 2 179591863 179591863 C G TTN Missense_Mutation p.Q6743H 0.14 TCGA-56-8625-01 2 179598041 179598041 C A TTN Missense_Mutation p.D5327Y 0.22 TCGA-56-8625-01 2 179629290 179629290 C A TTN Missense_Mutation p.G3318C 0.19 TCGA-56-8625-01 2 179664214 179664214 C T TTN Missense_Mutation p.R305K 0.21 TCGA-56-8625-01 2 186671911 186671911 C A FSIP2 Missense_Mutation p.R6049S 0.14 benign(0.001) TCGA-56-8625-01 2 186673297 186673297 G T FSIP2 Missense_Mutation p.V6511F 0.27 possibly_damaging(0.724) TCGA-56-8625-01 2 190324065 190324065 G A WDR75 Silent p.R231R 0.17 TCGA-56-8625-01 2 190554261 190554261 G C ANKAR Missense_Mutation p.D204H 0.13 deleterious(0) probably_damaging(1) TCGA-56-8625-01 2 190554342 190554342 G A ANKAR Missense_Mutation p.E231K 0.18 tolerated(0.05) possibly_damaging(0.488) TCGA-56-8625-01 2 210557512 210557512 T G MAP2 Silent p.T206T 0.17 TCGA-56-8625-01 2 210640633 210640633 A T UNC80 Silent p.V54V 0.16 TCGA-56-8625-01 2 216190858 216190858 G C ATIC Missense_Mutation p.L176F 0.13 deleterious(0) probably_damaging(0.982) TCGA-56-8625-01 2 223085034 223085034 G A PAX3 Missense_Mutation p.P333L 0.18 deleterious_low_confidence(0) probably_damaging(1) TCGA-56-8625-01 2 228173699 228173699 G A COL4A3 Missense_Mutation p.R1516Q 0.13 unknown(0) TCGA-56-8625-01 2 231118127 231118127 G A SP140 Missense_Mutation p.G385E 0.15 deleterious(0.02) benign(0.127) TCGA-56-8625-01 2 233243769 233243769 C A ALPP Silent p.A55A 0.20 TCGA-56-8625-01 2 233995249 233995249 G T INPP5D Missense_Mutation p.D186Y 0.19 deleterious(0) probably_damaging(0.975) TCGA-56-8625-01 2 234173737 234173737 G A ATG16L1 Missense_Mutation p.E197K 0.11 tolerated(0.2) possibly_damaging(0.577) TCGA-56-8625-01 2 238275418 238275418 C T COL6A3 Silent p.E1804E 0.11 TCGA-56-8625-01 2 238672051 238672051 G A LRRFIP1 Silent p.S565S 0.13 TCGA-56-8625-01 2 242035852 242035852 T A MTERFD2 Missense_Mutation p.Y236F 0.11 tolerated(0.05) probably_damaging(0.956) TCGA-56-8625-01 2 242176091 242176091 C T HDLBP Missense_Mutation p.C948Y 0.19 deleterious(0.04) probably_damaging(0.956) TCGA-56-8625-01 2 24245692 24245692 G A MFSD2B Missense_Mutation p.V327I 0.14 tolerated(0.13) benign(0.181) TCGA-56-8625-01 2 26022312 26022312 G A ASXL2 Silent p.S115S 0.17 TCGA-56-8625-01 2 27157591 27157591 C A DPYSL5 Missense_Mutation p.S312R 0.21 tolerated(0.17) probably_damaging(0.922) TCGA-56-8625-01 2 33487834 33487834 C G LTBP1 Missense_Mutation p.Q822E 0.22 deleterious(0.01) benign(0.338) TCGA-56-8625-01 2 50149205 50149205 C T NRXN1 Silent p.E1507E 0.15 TCGA-56-8625-01 2 55795490 55795490 C A SMEK2 Missense_Mutation p.R592L 0.23 deleterious(0) probably_damaging(0.988) TCGA-56-8625-01 2 64327570 64327570 C A PELI1 Missense_Mutation p.V89F 0.12 deleterious(0) probably_damaging(0.991) TCGA-56-8625-01 2 67631526 67631526 C G ETAA1 Nonsense_Mutation p.S571* 0.20 TCGA-56-8625-01 2 71160168 71160168 C G VAX2 Nonsense_Mutation p.S236* 0.06 TCGA-56-8625-01 2 7179870 7179870 C T RNF144A Silent p.D286D 0.13 TCGA-56-8625-01 2 74307632 74307632 G A TET3 Missense_Mutation p.E730K 0.21 deleterious(0.03) benign(0.008) TCGA-56-8625-01 2 74709824 74709824 C G CCDC142 Silent p.P47P 0.20 TCGA-56-8625-01 2 74753821 74753821 C A AUP1 3'UTR 0.26 TCGA-56-8625-01 2 96012824 96012824 C A KCNIP3 Intron 0.25 TCGA-56-8625-01 3 100963563 100963563 G A IMPG2 Nonsense_Mutation p.Q538* 0.14 TCGA-56-8625-01 3 111286404 111286404 A G CD96 Missense_Mutation p.I151M 0.41 deleterious(0.05) benign(0.086) TCGA-56-8625-01 3 113378877 113378877 T C KIAA2018 Missense_Mutation p.N551S 0.11 probably_damaging(0.991) TCGA-56-8625-01 3 113513770 113513770 T C ATP6V1A Missense_Mutation p.M347T 0.06 deleterious(0.02) probably_damaging(0.998) TCGA-56-8625-01 3 119120994 119120994 C T ARHGAP31 Silent p.V465V 0.11 TCGA-56-8625-01 3 124536491 124536491 G A ITGB5 Nonsense_Mutation p.Q369* 0.11 TCGA-56-8625-01 3 124567239 124567239 C G ITGB5 Silent p.R176R 0.11 TCGA-56-8625-01 3 125833399 125833399 C T ALDH1L1 Splice_Site p.X704_splice 0.10 TCGA-56-8625-01 3 126071645 126071645 C T KLF15 Missense_Mutation p.E41K 0.18 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-56-8625-01 3 126071674 126071674 G T KLF15 Missense_Mutation p.A31E 0.21 tolerated_low_confidence(0.74) benign(0.004) TCGA-56-8625-01 3 127642839 127642839 C T KBTBD12 Missense_Mutation p.S312L 0.09 tolerated(0.15) benign(0.206) TCGA-56-8625-01 3 128181854 128181854 C G DNAJB8 Missense_Mutation p.A79P 0.09 deleterious(0.04) benign(0.244) TCGA-56-8625-01 3 128979575 128979575 G T COPG1 Silent p.T351T 0.09 TCGA-56-8625-01 3 130452441 130452441 T A PIK3R4 Silent p.I467I 0.29 TCGA-56-8625-01 3 130683834 130683834 C T ATP2C1 Missense_Mutation p.T390M 0.08 deleterious(0) probably_damaging(1) TCGA-56-8625-01 3 137981277 137981277 C G NME9 3'UTR 0.12 TCGA-56-8625-01 3 139171939 139171939 C T RBP2 3'UTR 0.15 TCGA-56-8625-01 3 147128595 147128595 C A ZIC1 Silent p.P232P 0.49 TCGA-56-8625-01 3 148904506 148904506 G A CP Silent p.F626F 0.12 TCGA-56-8625-01 3 150264546 150264546 C A EIF2A 5'UTR 0.34 TCGA-56-8625-01 3 15094954 15094954 C A MRPS25 Missense_Mutation p.V88L 0.10 tolerated(0.16) benign(0.083) TCGA-56-8625-01 3 153993986 153993986 G T DHX36 Silent p.R1001R 0.15 TCGA-56-8625-01 3 158364599 158364599 C G GFM1 Silent p.L145L 0.12 TCGA-56-8625-01 3 158524852 158524852 G A MFSD1 Missense_Mutation p.C167Y 0.07 tolerated(0.52) benign(0.025) TCGA-56-8625-01 3 176750910 176750910 G C TBL1XR1 Missense_Mutation p.S422C 0.13 deleterious(0.02) probably_damaging(0.986) TCGA-56-8625-01 3 179576852 179576852 C T PEX5L Missense_Mutation p.E274K 0.09 deleterious(0.03) probably_damaging(0.953) TCGA-56-8625-01 3 180397282 180397282 G A CCDC39 5'UTR 0.11 TCGA-56-8625-01 3 184072337 184072337 G A CLCN2 Silent p.V502V 0.10 TCGA-56-8625-01 3 185146382 185146382 C T MAP3K13 Nonsense_Mutation p.Q5* 0.09 TCGA-56-8625-01 3 187003675 187003675 T A MASP1 Nonsense_Mutation p.K59* 0.14 TCGA-56-8625-01 3 195516687 195516687 C T MUC4 Silent p.Q588Q 0.12 TCGA-56-8625-01 3 197547255 197547255 G C LRCH3 Missense_Mutation p.L198F 0.12 deleterious(0) probably_damaging(0.999) TCGA-56-8625-01 3 33415166 33415166 G A FBXL2 Silent p.L184L 0.15 TCGA-56-8625-01 3 36570387 36570387 G A STAC Silent p.Q340Q 0.21 TCGA-56-8625-01 3 36759579 36759579 C A DCLK3 Missense_Mutation p.D559Y 0.36 deleterious(0) possibly_damaging(0.727) TCGA-56-8625-01 3 4842122 4842122 C T ITPR1 Silent p.P2300P 0.17 TCGA-56-8625-01 3 48451014 48451014 G T PLXNB1 Silent p.S1968S 0.33 TCGA-56-8625-01 3 48465682 48465682 G A PLXNB1 Silent p.S113S 0.33 TCGA-56-8625-01 3 48474309 48474309 G A CCDC51 Nonsense_Mutation p.R249* 0.16 TCGA-56-8625-01 3 49002408 49002408 C G ARIH2 Nonsense_Mutation p.S127* 0.15 TCGA-56-8625-01 3 49153279 49153279 C T USP19 Missense_Mutation p.E522K 0.19 deleterious(0.02) probably_damaging(0.997) TCGA-56-8625-01 3 49760142 49760142 C G GMPPB Missense_Mutation p.E150Q 0.11 tolerated(0.08) benign(0.06) TCGA-56-8625-01 3 49940022 49940022 C T MST1R Missense_Mutation p.E341K 0.19 deleterious(0.01) possibly_damaging(0.763) TCGA-56-8625-01 3 49940929 49940929 G T MST1R Silent p.R38R 0.17 TCGA-56-8625-01 3 51981791 51981791 T A PARP3 Missense_Mutation p.Y445N 0.18 deleterious(0.01) probably_damaging(0.971) TCGA-56-8625-01 3 52090119 52090119 G C DUSP7 Missense_Mutation p.I88M 0.15 deleterious(0) possibly_damaging(0.596) TCGA-56-8625-01 3 52524108 52524108 G C NISCH Silent p.L1158L 0.17 TCGA-56-8625-01 3 62388834 62388834 C G CADPS Silent p.V1268V 0.32 TCGA-56-8625-01 3 97662147 97662147 G A CRYBG3 Missense_Mutation p.E1020K 0.21 deleterious(0.03) benign(0.221) TCGA-56-8625-01 3 97983704 97983704 C A OR5H6 Missense_Mutation p.H192Q 0.16 deleterious(0.01) probably_damaging(0.993) TCGA-56-8625-01 3 97983706 97983706 T A OR5H6 Missense_Mutation p.F193Y 0.15 deleterious(0.03) probably_damaging(0.99) TCGA-56-8625-01 3 98307585 98307585 G A CPOX Missense_Mutation p.P309S 0.22 tolerated(0.11) benign(0.015) TCGA-56-8625-01 3 9859401 9859401 T A TTLL3 Missense_Mutation p.C273S 0.19 deleterious(0) probably_damaging(0.988) TCGA-56-8625-01 3 99897173 99897173 C G CMSS1 Missense_Mutation p.L261V 0.20 deleterious(0.01) benign(0.12) TCGA-56-8625-01 4 103610738 103610738 G A MANBA Missense_Mutation p.S318L 0.22 tolerated(0.12) benign(0.005) TCGA-56-8625-01 4 123283346 123283346 G T KIAA1109 Missense_Mutation p.G4988C 0.20 probably_damaging(0.999) TCGA-56-8625-01 4 155491807 155491807 C G FGB 3'UTR 0.43 TCGA-56-8625-01 4 169842795 169842795 C T PALLD Silent p.I987I 0.21 TCGA-56-8625-01 4 6596300 6596300 G C MAN2B2 Missense_Mutation p.A300P 0.18 deleterious(0.04) possibly_damaging(0.653) TCGA-56-8625-01 4 70080071 70080071 T A UGT2B11 Nonsense_Mutation p.R124* 0.21 TCGA-56-8625-01 4 9446295 9446295 C A DEFB131 Silent p.S12S 0.06 TCGA-56-8625-01 4 984975 984975 G A SLC26A1 Missense_Mutation p.R173C 0.20 deleterious(0) possibly_damaging(0.724) TCGA-56-8625-01 5 114557699 114557699 G T PGGT1B Nonsense_Mutation p.S222* 0.21 TCGA-56-8625-01 5 137426381 137426381 G A WNT8A Silent p.L225L 0.24 TCGA-56-8625-01 5 13766184 13766184 G A DNAH5 Silent p.V3334V 0.17 TCGA-56-8625-01 5 140554008 140554008 T A PCDHB7 Missense_Mutation p.V531E 0.17 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-56-8625-01 5 143352 143352 C T PLEKHG4B Silent p.S200S 0.15 TCGA-56-8625-01 5 143586409 143586409 A G KCTD16 Missense_Mutation p.I44M 0.16 deleterious(0.04) benign(0.077) TCGA-56-8625-01 5 156378729 156378729 C A TIMD4 Missense_Mutation p.R158L 0.20 tolerated(0.48) benign(0.004) TCGA-56-8625-01 5 161569318 161569318 T A GABRG2 Silent p.S346S 0.15 TCGA-56-8625-01 5 168180040 168180040 C A SLIT3 Silent p.V631V 0.16 TCGA-56-8625-01 5 170148829 170148829 C A KCNIP1 Intron 0.25 TCGA-56-8625-01 5 170224486 170224486 G - GABRP Frame_Shift_Del p.A159Hfs*35 0.12 TCGA-56-8625-01 5 176730073 176730073 G A RAB24 Silent p.I41I 0.12 TCGA-56-8625-01 5 178358743 178358743 C T ZFP2 Silent p.S143S 0.08 TCGA-56-8625-01 5 23527501 23527501 G T PRDM9 Missense_Mutation p.R768S 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-56-8625-01 5 251488 251488 G C SDHA Missense_Mutation p.E567Q 0.09 deleterious_low_confidence(0) probably_damaging(1) TCGA-56-8625-01 5 37516693 37516693 G A WDR70 Splice_Site p.X306_splice 0.27 TCGA-56-8625-01 5 41929955 41929955 G T FBXO4 Silent p.V194V 0.22 TCGA-56-8625-01 5 45267263 45267263 C T HCN1 Missense_Mutation p.E571K 0.12 deleterious(0.01) probably_damaging(0.988) TCGA-56-8625-01 5 80497259 80497259 C T RASGRF2 Silent p.L968L 0.16 TCGA-56-8625-01 5 878475 878475 C G BRD9 Silent p.A422A 0.21 TCGA-56-8625-01 6 149911862 149911862 G C GINM1 Splice_Site p.X294_splice 0.29 TCGA-56-8625-01 6 158517283 158517283 A G SYNJ2 Missense_Mutation p.K1460E 0.15 tolerated_low_confidence(1) benign(0) TCGA-56-8625-01 6 160450674 160450674 C T IGF2R Missense_Mutation p.S290L 0.29 deleterious(0.01) probably_damaging(0.985) TCGA-56-8625-01 6 26205229 26205229 G T HIST1H4E 3'UTR 0.23 TCGA-56-8625-01 6 26428955 26428955 C T BTN2A3P RNA 0.16 TCGA-56-8625-01 6 31557392 31557392 G A NCR3 Missense_Mutation p.A136V 0.20 tolerated(0.2) benign(0.003) TCGA-56-8625-01 6 31777790 31777790 G C HSPA1L 3'UTR 0.19 TCGA-56-8625-01 6 32946049 32946049 G A BRD2 Silent p.G575G 0.27 TCGA-56-8625-01 6 33288283 33288283 G C DAXX Silent p.V375V 0.21 TCGA-56-8625-01 6 33288556 33288556 G A DAXX Silent p.L332L 0.23 TCGA-56-8625-01 6 41884615 41884615 C A MED20 Missense_Mutation p.R26L 0.18 deleterious(0) benign(0.41) TCGA-56-8625-01 6 42797565 42797565 G T GLTSCR1L Missense_Mutation p.Q498H 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-56-8625-01 6 43023304 43023304 C A MRPL2 Silent p.L228L 0.19 TCGA-56-8625-01 6 49426967 49426967 G C MUT Silent p.P71P 0.18 TCGA-56-8625-01 6 52622687 52622687 C A GSTA2 Missense_Mutation p.R20L 0.15 deleterious(0.02) probably_damaging(0.986) TCGA-56-8625-01 6 637826 637826 T G EXOC2 5'UTR 0.23 TCGA-56-8625-01 6 7211806 7211806 A G RREB1 Missense_Mutation p.M191V 0.20 tolerated(1) benign(0.003) TCGA-56-8625-01 6 84910511 84910511 T A KIAA1009 Silent p.G277G 0.14 TCGA-56-8625-01 6 88769293 88769293 C G SPACA1 Silent p.V199V 0.23 TCGA-56-8625-01 6 90642171 90642171 C T BACH2 Missense_Mutation p.D828N 0.22 deleterious(0) possibly_damaging(0.511) TCGA-56-8625-01 6 90642237 90642237 C T BACH2 Missense_Mutation p.E806K 0.27 tolerated(0.1) benign(0.004) TCGA-56-8625-01 6 94120846 94120846 G C EPHA7 Missense_Mutation p.R69G 0.08 deleterious(0) probably_damaging(0.973) TCGA-56-8625-01 6 99282757 99282757 C A POU3F2 Missense_Mutation p.T3N 0.12 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-56-8625-01 7 100859266 100859266 C A PLOD3 Missense_Mutation p.V180L 0.18 tolerated(0.36) benign(0.229) TCGA-56-8625-01 7 101758527 101758527 C T CUX1 Silent p.T227T 0.12 TCGA-56-8625-01 7 103341452 103341452 C - RELN Frame_Shift_Del p.S270Qfs*28 0.19 TCGA-56-8625-01 7 128615984 128615984 C G TNPO3 Silent p.V689V 0.19 TCGA-56-8625-01 7 138487730 138487730 C A TMEM213 Missense_Mutation p.S80R 0.11 deleterious(0) possibly_damaging(0.504) TCGA-56-8625-01 7 143632565 143632565 G C OR2F2 Missense_Mutation p.Q80H 0.14 deleterious(0) possibly_damaging(0.765) TCGA-56-8625-01 7 144061102 144061102 C G ARHGEF5 Missense_Mutation p.A447G 0.19 tolerated(0.39) benign(0.001) TCGA-56-8625-01 7 149422532 149422532 C G KRBA1 Missense_Mutation p.S418C 0.12 deleterious(0.04) benign(0.001) TCGA-56-8625-01 7 149504040 149504040 C T SSPO RNA 0.44 TCGA-56-8625-01 7 151092968 151092968 G T WDR86 Missense_Mutation p.T207K 0.17 tolerated(0.12) benign(0.276) TCGA-56-8625-01 7 154172078 154172078 G C DPP6 Missense_Mutation p.S138T 0.14 tolerated(0.22) benign(0.128) TCGA-56-8625-01 7 15584502 15584502 C G AGMO Missense_Mutation p.E102Q 0.22 tolerated(0.07) benign(0.066) TCGA-56-8625-01 7 22985097 22985097 G C FAM126A 3'UTR 0.26 TCGA-56-8625-01 7 23239850 23239850 G T NUPL2 Missense_Mutation p.G253V 0.17 tolerated(0.16) probably_damaging(0.943) TCGA-56-8625-01 7 38398570 38398570 G A TRGV3 Missense_Mutation p.A4V 0.35 tolerated(0.13) benign(0.037) TCGA-56-8625-01 7 43519289 43519289 T C HECW1 Silent p.N1060N 0.24 TCGA-56-8625-01 7 53103991 53103991 C A POM121L12 Missense_Mutation p.N209K 0.10 tolerated(0.08) possibly_damaging(0.494) TCGA-56-8625-01 7 56087427 56087427 C T PSPH Missense_Mutation p.M47I 0.23 tolerated(0.14) benign(0.369) TCGA-56-8625-01 7 66479538 66479538 A T TYW1 Missense_Mutation p.H187L 0.17 deleterious(0.01) possibly_damaging(0.903) TCGA-56-8625-01 7 71571193 71571193 C G CALN1 Missense_Mutation p.G111R 0.24 deleterious(0) probably_damaging(0.944) TCGA-56-8625-01 7 72743436 72743436 A G FKBP6 Silent p.L83L 0.12 TCGA-56-8625-01 7 75140401 75140401 T A Y_RNA 3'Flank 0.17 TCGA-56-8625-01 7 80378339 80378339 T C SEMA3C Missense_Mutation p.R573G 0.24 tolerated(0.23) probably_damaging(0.983) TCGA-56-8625-01 7 87179520 87179520 C T ABCB1 Silent p.L439L 0.12 TCGA-56-8625-01 7 87537243 87537243 A G DBF4 Missense_Mutation p.D597G 0.17 tolerated(0.42) possibly_damaging(0.543) TCGA-56-8625-01 7 99227017 99227017 G A ZSCAN25 Missense_Mutation p.E337K 0.14 tolerated(0.58) benign(0.015) TCGA-56-8625-01 8 10470831 10470831 C T RP1L1 Silent p.P259P 0.18 TCGA-56-8625-01 8 113304832 113304832 G A CSMD3 Nonsense_Mutation p.Q2908* 0.06 TCGA-56-8625-01 8 114389069 114389069 C A CSMD3 Intron 0.22 TCGA-56-8625-01 8 126052132 126052132 C T KIAA0196 Silent p.Q953Q 0.26 TCGA-56-8625-01 8 145624750 145624750 C T CPSF1 Silent p.S436S 0.07 TCGA-56-8625-01 8 145692356 145692356 G A KIFC2 Missense_Mutation p.E65K 0.20 deleterious_low_confidence(0.01) benign(0.437) TCGA-56-8625-01 8 18541579 18541579 G A PSD3 Intron 0.29 TCGA-56-8625-01 8 20110497 20110497 G T LZTS1 Missense_Mutation p.N315K 0.12 deleterious(0.05) benign(0.005) TCGA-56-8625-01 8 21767311 21767311 G C DOK2 Silent p.P250P 0.13 TCGA-56-8625-01 8 2964071 2964071 C A CSMD1 Missense_Mutation p.G2310C 0.12 possibly_damaging(0.866) TCGA-56-8625-01 8 35606161 35606161 C T UNC5D Missense_Mutation p.S628F 0.17 deleterious(0.03) benign(0.369) TCGA-56-8625-01 8 42698250 42698250 C G THAP1 5'UTR 0.12 TCGA-56-8625-01 8 62460736 62460736 C T ASPH Missense_Mutation p.R553K 0.20 tolerated(0.25) benign(0.034) TCGA-56-8625-01 8 67062060 67062060 G T TRIM55 Missense_Mutation p.V262F 0.20 deleterious(0) probably_damaging(0.969) TCGA-56-8625-01 8 68005814 68005814 C T CSPP1 Nonsense_Mutation p.Q150* 0.13 TCGA-56-8625-01 8 71129001 71129001 T A NCOA2 Splice_Site 0.20 TCGA-56-8625-01 9 100190912 100190912 T C TDRD7 Silent p.S55S 0.19 TCGA-56-8625-01 9 100616394 100616394 C T FOXE1 Silent p.I66I 0.10 TCGA-56-8625-01 9 103059271 103059271 G C INVS Missense_Mutation p.W953C 0.12 tolerated_low_confidence(0.18) benign(0.013) TCGA-56-8625-01 9 104152769 104152769 C G MRPL50 Missense_Mutation p.L152F 0.12 deleterious(0.01) possibly_damaging(0.86) TCGA-56-8625-01 9 115805949 115805949 C A ZFP37 Missense_Mutation p.G317W 0.16 deleterious(0) probably_damaging(0.999) TCGA-56-8625-01 9 116018452 116018452 G A SLC31A1 Silent p.G8G 0.15 TCGA-56-8625-01 9 123898083 123898083 G A CNTRL Splice_Site p.X676_splice 0.20 TCGA-56-8625-01 9 124922000 124922000 C T NDUFA8 5'UTR 0.12 TCGA-56-8625-01 9 125377396 125377396 G A OR1Q1 Missense_Mutation p.C127Y 0.11 deleterious(0) probably_damaging(0.996) TCGA-56-8625-01 9 127566468 127566468 G C OLFML2A Missense_Mutation p.E339Q 0.17 tolerated(0.42) benign(0.403) TCGA-56-8625-01 9 130219616 130219616 C T LRSAM1 Missense_Mutation p.H66Y 0.16 tolerated(1) benign(0) TCGA-56-8625-01 9 130478394 130478394 G A PTRH1 5'UTR 0.17 TCGA-56-8625-01 9 134019949 134019949 C T NUP214 Missense_Mutation p.S526F 0.10 possibly_damaging(0.683) TCGA-56-8625-01 9 135073459 135073459 G A NTNG2 Nonsense_Mutation p.W107* 0.20 TCGA-56-8625-01 9 135152448 135152448 C T SETX Missense_Mutation p.D2312N 0.16 deleterious(0.01) probably_damaging(0.93) TCGA-56-8625-01 9 136521600 136521600 C A DBH Intron 0.19 TCGA-56-8625-01 9 137328374 137328374 C T RXRA Missense_Mutation p.H435Y 0.11 tolerated(0.07) probably_damaging(0.999) TCGA-56-8625-01 9 138516281 138516281 C T GLT6D1 Missense_Mutation p.E165K 0.16 deleterious(0.02) probably_damaging(0.937) TCGA-56-8625-01 9 139305038 139305038 G A SDCCAG3 5'Flank 0.27 TCGA-56-8625-01 9 139305113 139305113 G A PMPCA 5'UTR 0.17 TCGA-56-8625-01 9 139699011 139699011 C T CCDC183 Missense_Mutation p.R242W 0.15 deleterious(0.02) benign(0.059) TCGA-56-8625-01 9 140130478 140130478 C T SLC34A3 Silent p.P470P 0.22 TCGA-56-8625-01 9 140865843 140865843 T A CACNA1B Missense_Mutation p.F448I 0.33 deleterious(0.01) benign(0.043) TCGA-56-8625-01 9 27949502 27949502 C T LINGO2 Missense_Mutation p.E390K 0.20 tolerated(0.06) benign(0.026) TCGA-56-8625-01 9 32431748 32431748 G C ACO1 Silent p.L586L 0.24 TCGA-56-8625-01 9 35101913 35101913 C G STOML2 Missense_Mutation p.M110I 0.17 tolerated(0.47) benign(0.009) TCGA-56-8625-01 9 69113702 69113702 G - RP11-87H9.3 5'Flank 0.13 TCGA-56-8625-01 9 84532407 84532407 G C SPATA31D5P RNA 0.13 TCGA-56-8625-01 9 87285495 87285495 C G NTRK2 5'UTR 0.19 TCGA-56-8625-01 X 100807804 100807804 C T ARMCX1 5'UTR 0.12 TCGA-56-8625-01 X 101396307 101396307 G A TCEAL6 5'UTR 0.25 TCGA-56-8625-01 X 103499135 103499135 G A ESX1 Missense_Mutation p.S69L 0.13 tolerated(0.67) possibly_damaging(0.602) TCGA-56-8625-01 X 105281099 105281099 G T SERPINA7 5'UTR 0.20 TCGA-56-8625-01 X 106171605 106171605 C A CLDN2 Silent p.G49G 0.10 TCGA-56-8625-01 X 106242944 106242944 G T MORC4 Missense_Mutation p.S46R 0.70 deleterious(0) possibly_damaging(0.655) TCGA-56-8625-01 X 111195442 111195442 C A TRPC5 Missense_Mutation p.L69F 0.13 deleterious(0.02) probably_damaging(1) TCGA-56-8625-01 X 117785975 117785975 G T DOCK11 Nonsense_Mutation p.G1544* 0.36 TCGA-56-8625-01 X 118230456 118230456 C G KIAA1210 Splice_Site p.X422_splice 0.22 TCGA-56-8625-01 X 118585945 118585945 C A SLC25A43 Intron 0.22 TCGA-56-8625-01 X 119293305 119293305 G T RHOXF2 Missense_Mutation p.R155L 0.10 deleterious(0.05) benign(0.097) TCGA-56-8625-01 X 123019589 123019589 A G XIAP Missense_Mutation p.E26G 0.24 deleterious(0) benign(0.342) TCGA-56-8625-01 X 123657318 123657318 C A TENM1 Missense_Mutation p.D977Y 0.17 tolerated(0.06) possibly_damaging(0.607) TCGA-56-8625-01 X 129201295 129201295 G A ELF4 Silent p.L465L 0.19 TCGA-56-8625-01 X 129206354 129206354 G T ELF4 Missense_Mutation p.P127T 0.15 tolerated(0.75) benign(0.024) TCGA-56-8625-01 X 134992261 134992261 C T SAGE1 Missense_Mutation p.S599L 0.15 tolerated(0.35) probably_damaging(0.947) TCGA-56-8625-01 X 135593669 135593669 G C HTATSF1 Missense_Mutation p.D589H 0.16 deleterious_low_confidence(0) possibly_damaging(0.635) TCGA-56-8625-01 X 13621517 13621517 C T EGFL6 Missense_Mutation p.S161L 0.08 tolerated(0.09) benign(0.03) TCGA-56-8625-01 X 13775840 13775840 G A OFD1 Silent p.K491K 0.12 TCGA-56-8625-01 X 138667329 138667329 C T MCF2 Missense_Mutation p.E957K 0.15 tolerated(0.88) benign(0.002) TCGA-56-8625-01 X 139586529 139586529 C T SOX3 Missense_Mutation p.G233S 0.32 tolerated(0.13) probably_damaging(0.997) TCGA-56-8625-01 X 148048382 148048382 C A AFF2 Silent p.A992A 0.21 TCGA-56-8625-01 X 149638487 149638487 G T MAMLD1 Missense_Mutation p.Q189H 0.13 tolerated(0.07) probably_damaging(0.983) TCGA-56-8625-01 X 149919219 149919219 G T MTMR1 Missense_Mutation p.E520D 0.20 deleterious(0) possibly_damaging(0.562) TCGA-56-8625-01 X 149963948 149963948 G T CD99L2 Missense_Mutation p.H97N 0.19 tolerated(0.3) benign(0.258) TCGA-56-8625-01 X 151093028 151093028 G T MAGEA4 Missense_Mutation p.V298F 0.24 deleterious(0.03) benign(0.113) TCGA-56-8625-01 X 153035662 153035662 C A PLXNB3 Missense_Mutation p.T605N 0.19 deleterious(0.03) benign(0.343) TCGA-56-8625-01 X 153035663 153035663 C G PLXNB3 Silent p.T605T 0.19 TCGA-56-8625-01 X 153056030 153056030 C A IDH3G Nonsense_Mutation p.E42* 0.19 TCGA-56-8625-01 X 153135928 153135928 G A L1CAM Missense_Mutation p.R241C 0.16 deleterious(0.01) possibly_damaging(0.816) TCGA-56-8625-01 X 153215869 153215869 C A HCFC1 Silent p.P1943P 0.12 TCGA-56-8625-01 X 153581388 153581388 G T FLNA Silent p.I2069I 0.25 TCGA-56-8625-01 X 153588902 153588902 G A FLNA Silent p.R1087R 0.18 TCGA-56-8625-01 X 153588903 153588903 C A FLNA Missense_Mutation p.R1087L 0.18 deleterious(0.05) benign(0.001) TCGA-56-8625-01 X 153692585 153692585 T A PLXNA3 Missense_Mutation p.L586Q 0.14 tolerated(0.39) possibly_damaging(0.629) TCGA-56-8625-01 X 153881755 153881755 G C CTAG2 Missense_Mutation p.T12R 0.21 tolerated_low_confidence(0.05) unknown(0) TCGA-56-8625-01 X 154489926 154489926 C A RAB39B 3'UTR 0.13 TCGA-56-8625-01 X 18944625 18944625 G T PHKA2 Missense_Mutation p.H469N 0.48 tolerated(0.36) benign(0.003) TCGA-56-8625-01 X 19606880 19606880 G C SH3KBP1 Silent p.P393P 0.39 TCGA-56-8625-01 X 20236923 20236923 T G RPS6KA3 Intron 0.09 TCGA-56-8625-01 X 21624996 21624996 C G CNKSR2 Missense_Mutation p.S715W 0.52 deleterious(0) probably_damaging(0.999) TCGA-56-8625-01 X 22239772 22239772 C A PHEX Missense_Mutation p.S604Y 0.40 deleterious(0) probably_damaging(0.961) TCGA-56-8625-01 X 23412032 23412032 A G PTCHD1 Silent p.L799L 0.51 TCGA-56-8625-01 X 27998407 27998407 G T DCAF8L1 Missense_Mutation p.Q349K 0.53 deleterious(0) benign(0.206) TCGA-56-8625-01 X 37586909 37586909 C T XK Silent p.L177L 0.22 TCGA-56-8625-01 X 37985908 37985908 G C SYTL5 Missense_Mutation p.K728N 0.20 deleterious(0) benign(0.005) TCGA-56-8625-01 X 38016171 38016171 C A SRPX Missense_Mutation p.R356L 0.10 deleterious(0.01) possibly_damaging(0.495) TCGA-56-8625-01 X 47518318 47518318 C G UXT Silent p.T15T 0.44 TCGA-56-8625-01 X 47837005 47837005 C T ZNF182 Missense_Mutation p.E161K 0.54 tolerated(0.22) benign(0.048) TCGA-56-8625-01 X 51638148 51638148 G T MAGED1 Splice_Site p.X72_splice 0.76 TCGA-56-8625-01 X 51641692 51641692 C T MAGED1 Silent p.L655L 0.06 TCGA-56-8625-01 X 53436121 53436121 T A SMC1A Missense_Mutation p.I473F 0.10 deleterious(0.02) probably_damaging(0.922) TCGA-56-8625-01 X 53641573 53641573 T C HUWE1 Missense_Mutation p.E728G 0.14 benign(0.263) TCGA-56-8625-01 X 54472752 54472752 G A FGD1 Silent p.I892I 0.09 TCGA-56-8625-01 X 55748692 55748692 G T RRAGB Missense_Mutation p.R67I 0.56 deleterious(0.01) possibly_damaging(0.515) TCGA-56-8625-01 X 56591625 56591625 C A UBQLN2 Missense_Mutation p.P440Q 0.67 deleterious(0) probably_damaging(0.995) TCGA-56-8625-01 X 62875486 62875486 G T ARHGEF9 Missense_Mutation p.N396K 0.21 tolerated(0.23) probably_damaging(0.971) TCGA-56-8625-01 X 65392227 65392227 G T HEPH Missense_Mutation p.K120N 0.20 tolerated(0.06) benign(0.03) TCGA-56-8625-01 X 65479959 65479959 G T HEPH Silent p.R1072R 0.14 TCGA-56-8625-01 X 65479960 65479960 G A HEPH Missense_Mutation p.A1073T 0.14 tolerated(0.18) probably_damaging(1) TCGA-56-8625-01 X 89177852 89177852 A T TGIF2LX 3'UTR 0.27 TCGA-56-8626-01 10 117001406 117001406 G T ATRNL1 Missense_Mutation p.V527F 0.13 deleterious(0.01) probably_damaging(0.966) TCGA-56-8626-01 10 129921375 129921375 T A MKI67 Missense_Mutation p.I51F 0.23 deleterious(0) probably_damaging(0.998) TCGA-56-8626-01 10 131506278 131506278 C G MGMT Missense_Mutation p.P113R 0.08 deleterious(0.01) probably_damaging(1) TCGA-56-8626-01 10 135084293 135084293 C G ADAM8 Missense_Mutation p.E527D 0.13 tolerated(0.5) benign(0.236) TCGA-56-8626-01 10 45799645 45799645 G A OR13A1 Missense_Mutation p.P76S 0.30 deleterious(0.01) possibly_damaging(0.84) TCGA-56-8626-01 10 54032175 54032184 GCAAATATTT - PRKG1 Frame_Shift_Del p.K447Ifs*3 0.14 TCGA-56-8626-01 10 61834509 61834509 T G ANK3 Missense_Mutation p.S2044R 0.24 benign(0.137) TCGA-56-8626-01 10 91144040 91144040 T C IFIT1B Silent p.L324L 0.15 TCGA-56-8626-01 10 93088 93088 A T TUBB8 Missense_Mutation p.M415K 0.15 deleterious_low_confidence(0) probably_damaging(0.945) TCGA-56-8626-01 10 98742112 98742112 G A C10orf12 Missense_Mutation p.G322D 0.15 tolerated(0.25) benign(0.021) TCGA-56-8626-01 11 104776347 104776347 T G RP11-693N9.2 Intron 0.18 TCGA-56-8626-01 11 108385069 108385069 G A EXPH5 Silent p.L389L 0.23 TCGA-56-8626-01 11 111575800 111575800 G A SIK2 Silent p.V346V 0.18 TCGA-56-8626-01 11 116728595 116728595 C T SIK3 Missense_Mutation p.E1090K 0.08 deleterious_low_confidence(0.01) benign(0.297) TCGA-56-8626-01 11 117299494 117299498 ATACA CTTCCG DSCAML1 Frame_Shift_Ins p.L1963Pfs*16 0.17 TCGA-56-8626-01 11 119044368 119044368 C A NLRX1 Missense_Mutation p.P137H 0.16 tolerated(0.13) possibly_damaging(0.855) TCGA-56-8626-01 11 123900376 123900376 C G OR10G8 Missense_Mutation p.P16R 0.14 deleterious(0.01) probably_damaging(0.96) TCGA-56-8626-01 11 43350311 43350311 G A API5 Missense_Mutation p.G332D 0.27 tolerated(0.63) benign(0.014) TCGA-56-8626-01 11 4615305 4615305 C A OR52I1 Missense_Mutation p.P13T 0.14 deleterious(0.03) benign(0.046) TCGA-56-8626-01 11 5443824 5443824 C A OR51Q1 Missense_Mutation p.L132I 0.41 deleterious(0) probably_damaging(0.998) TCGA-56-8626-01 11 55579121 55579121 A G OR5L1 Missense_Mutation p.Y60C 0.16 deleterious(0.01) benign(0.295) TCGA-56-8626-01 11 55904506 55904506 G A OR8J3 Missense_Mutation p.S230L 0.22 deleterious(0) probably_damaging(0.967) TCGA-56-8626-01 11 56128103 56128103 T A OR8J1 Nonsense_Mutation p.C127* 0.26 TCGA-56-8626-01 11 57147255 57147255 G T PRG3 Missense_Mutation p.S29R 0.06 tolerated(0.07) benign(0.06) TCGA-56-8626-01 11 5878786 5878786 A G OR52E8 Silent p.T49T 0.13 TCGA-56-8626-01 11 61404308 61404308 G C RPLP0P2 RNA 0.12 TCGA-56-8626-01 11 62433291 62433291 G A METTL12 5'UTR 0.21 TCGA-56-8626-01 11 64851144 64851144 G C CDCA5 Nonsense_Mutation p.S33* 0.08 TCGA-56-8626-01 11 7091685 7091685 A T NLRP14 Silent p.L1048L 0.20 TCGA-56-8626-01 11 78412811 78412811 C A TENM4 Missense_Mutation p.G1616V 0.19 deleterious(0) benign(0.052) TCGA-56-8626-01 11 78412812 78412812 C A TENM4 Missense_Mutation p.G1616C 0.19 deleterious(0) possibly_damaging(0.899) TCGA-56-8626-01 11 84028264 84028264 G T DLG2 Intron 0.16 TCGA-56-8626-01 11 85438965 85438965 C A SYTL2 5'Flank 0.17 TCGA-56-8626-01 11 89165971 89165971 C A NOX4 Missense_Mutation p.A177S 0.16 tolerated(0.64) benign(0.206) TCGA-56-8626-01 11 89224418 89224418 G A NOX4 5'UTR 0.36 TCGA-56-8626-01 11 92600188 92600188 C T FAT3 Silent p.S3980S 0.20 TCGA-56-8626-01 11 95551044 95551044 A C CEP57 Missense_Mutation p.T200P 0.29 deleterious(0) benign(0.229) TCGA-56-8626-01 12 10218182 10218182 C T CLEC9A Missense_Mutation p.T226M 0.12 tolerated(0.14) benign(0.058) TCGA-56-8626-01 12 103352548 103352548 G C ASCL1 Missense_Mutation p.E176Q 0.21 deleterious(0.03) probably_damaging(0.952) TCGA-56-8626-01 12 11461424 11461424 G A PRB4 Missense_Mutation p.P165S 0.19 tolerated_low_confidence(0.05) unknown(0) TCGA-56-8626-01 12 124239002 124239002 C G ATP6V0A2 Missense_Mutation p.I737M 0.10 deleterious(0) probably_damaging(0.989) TCGA-56-8626-01 12 129558561 129558561 G A TMEM132D Silent p.V1053V 0.21 TCGA-56-8626-01 12 130648361 130648361 C T FZD10 Missense_Mutation p.R292W 0.23 deleterious(0) probably_damaging(0.999) TCGA-56-8626-01 12 13208729 13208729 G C KIAA1467 Silent p.A94A 0.12 TCGA-56-8626-01 12 132325193 132325193 C A MMP17 Silent p.V166V 0.21 TCGA-56-8626-01 12 13233648 13233648 G T KIAA1467 3'UTR 0.28 TCGA-56-8626-01 12 15134471 15134471 G T PDE6H 3'UTR 0.19 TCGA-56-8626-01 12 21665302 21665302 A T GOLT1B Missense_Mutation p.I124F 0.21 deleterious(0.04) probably_damaging(0.969) TCGA-56-8626-01 12 31632894 31632894 G C DENND5B Missense_Mutation p.S178C 0.15 deleterious(0.02) probably_damaging(0.91) TCGA-56-8626-01 12 46322098 46322098 T A SCAF11 Silent p.A462A 0.21 TCGA-56-8626-01 12 49434959 49434959 G - KMT2D Frame_Shift_Del p.Y2199Ifs*65 0.17 TCGA-56-8626-01 12 52758124 52758124 G A KRT85 Missense_Mutation p.A219V 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-56-8626-01 12 63543972 63543972 G T AVPR1A Silent p.A215A 0.20 TCGA-56-8626-01 12 78516003 78516003 G T NAV3 Missense_Mutation p.V1345L 0.16 tolerated(0.33) possibly_damaging(0.611) TCGA-56-8626-01 12 81833754 81833754 C A PPFIA2 Missense_Mutation p.Q214H 0.10 deleterious(0) possibly_damaging(0.881) TCGA-56-8626-01 13 102250578 102250578 C A ITGBL1 Missense_Mutation p.S315Y 0.21 deleterious(0) possibly_damaging(0.713) TCGA-56-8626-01 13 102250579 102250579 C A ITGBL1 Silent p.S315S 0.22 TCGA-56-8626-01 13 103450943 103450943 C A KDELC1 Missense_Mutation p.Q26H 0.17 tolerated(0.11) benign(0.202) TCGA-56-8626-01 13 109704789 109704789 T A MYO16 Missense_Mutation p.I983N 0.14 tolerated(0.15) benign(0.171) TCGA-56-8626-01 13 49794828 49794828 G A MLNR Missense_Mutation p.E119K 0.26 deleterious(0) probably_damaging(1) TCGA-56-8626-01 13 52603567 52603567 C G UTP14C Silent p.A209A 0.29 TCGA-56-8626-01 13 61141680 61141680 C T TDRD3 Nonsense_Mutation p.Q714* 0.13 TCGA-56-8626-01 13 72133951 72133951 C T DACH1 Splice_Site p.X481_splice 0.15 TCGA-56-8626-01 13 75915258 75915258 C A TBC1D4 Intron 0.15 TCGA-56-8626-01 13 96642237 96642238 CC A UGGT2 Frame_Shift_Del p.W307Lfs*14 0.21 TCGA-56-8626-01 14 22217852 22217852 C G TRAV5 Missense_Mutation p.T68R 0.13 deleterious(0) benign(0.373) TCGA-56-8626-01 14 36154146 36154146 C A RALGAPA1 Missense_Mutation p.R922L 0.30 tolerated(0.29) benign(0.13) TCGA-56-8626-01 14 64749535 64749535 T G ESR2 Missense_Mutation p.S57R 0.15 deleterious(0.03) possibly_damaging(0.744) TCGA-56-8626-01 14 72925019 72925019 C G RGS6 Silent p.G92G 0.17 TCGA-56-8626-01 14 88693874 88693874 C A KCNK10 Missense_Mutation p.G176W 0.21 deleterious(0) probably_damaging(0.993) TCGA-56-8626-01 14 89042223 89042223 G T ZC3H14 Silent p.L354L 0.23 TCGA-56-8626-01 14 94933604 94933604 A G SERPINA9 Silent p.F266F 0.21 TCGA-56-8626-01 14 96134792 96134792 C A TCL6 Intron 0.15 TCGA-56-8626-01 15 102211893 102211893 C A TARSL2 Missense_Mutation p.G616V 0.14 deleterious(0) probably_damaging(1) TCGA-56-8626-01 15 24922245 24922245 C A NPAP1 Missense_Mutation p.L411M 0.22 tolerated(0.06) probably_damaging(0.989) TCGA-56-8626-01 15 24923989 24923989 G C NPAP1 Missense_Mutation p.G992A 0.12 tolerated(0.12) probably_damaging(0.94) TCGA-56-8626-01 15 27184392 27184392 C T GABRA5 Intron 0.15 TCGA-56-8626-01 15 35082468 35082468 A G ACTC1 3'UTR 0.15 TCGA-56-8626-01 15 42003375 42003375 G T MGA Missense_Mutation p.R971L 0.14 deleterious(0.01) probably_damaging(0.983) TCGA-56-8626-01 15 49034208 49034208 G A CEP152 Nonsense_Mutation p.R1309* 0.20 TCGA-56-8626-01 15 57212104 57212104 G A TCF12 5'UTR 0.08 TCGA-56-8626-01 15 78217394 78217394 T C RP11-114H24.7 3'Flank 0.24 TCGA-56-8626-01 15 84159641 84159641 G T SH3GL3 Intron 0.17 TCGA-56-8626-01 15 84159642 84159642 G T SH3GL3 Intron 0.18 TCGA-56-8626-01 15 90220705 90220705 C A PLIN1 Missense_Mutation p.G6C 0.18 tolerated(0.11) benign(0.016) TCGA-56-8626-01 15 91334073 91334073 G A BLM Missense_Mutation p.M1006I 0.28 tolerated(0.15) benign(0.001) TCGA-56-8626-01 16 1245996 1245996 C G CACNA1H Missense_Mutation p.P206A 0.11 deleterious(0) probably_damaging(0.999) TCGA-56-8626-01 16 1812462 1812462 G T MAPK8IP3 Silent p.V549V 0.11 TCGA-56-8626-01 16 21658768 21658768 A C IGSF6 Missense_Mutation p.L38R 0.20 tolerated(0.08) probably_damaging(1) TCGA-56-8626-01 16 2546422 2546422 G A RP11-20I23.1 Silent p.P91P 0.09 TCGA-56-8626-01 16 30038163 30038163 G A FAM57B Missense_Mutation p.H71Y 0.12 deleterious(0.04) probably_damaging(1) TCGA-56-8626-01 16 31422400 31422400 G T ITGAD Missense_Mutation p.G454C 0.19 deleterious(0) probably_damaging(1) TCGA-56-8626-01 16 55903522 55903522 C T CES5A Splice_Site p.X213_splice 0.17 TCGA-56-8626-01 16 71319517 71319517 T A CMTR2 Nonsense_Mutation p.R103* 0.29 TCGA-56-8626-01 17 15516070 15516070 A G RP11-385D13.1 Missense_Mutation p.V666A 0.25 tolerated_low_confidence(0.54) benign(0.001) TCGA-56-8626-01 17 16723358 16723358 G C AC022596.6 RNA 0.20 TCGA-56-8626-01 17 20914485 20914485 G A USP22 Missense_Mutation p.T361M 0.18 deleterious(0) possibly_damaging(0.849) TCGA-56-8626-01 17 3030524 3030524 C A OR1G1 Missense_Mutation p.V108L 0.29 tolerated(0.15) benign(0.034) TCGA-56-8626-01 17 37673694 37673694 C G CDK12 Missense_Mutation p.R950G 0.17 probably_damaging(0.999) TCGA-56-8626-01 17 46655268 46655268 C G HOXB4 Missense_Mutation p.E138D 0.18 tolerated(0.3) benign(0.082) TCGA-56-8626-01 17 4937222 4937222 G A SLC52A1 Missense_Mutation p.P188S 0.23 tolerated(0.05) benign(0.005) TCGA-56-8626-01 17 4937223 4937223 G A SLC52A1 Silent p.F187F 0.23 TCGA-56-8626-01 17 61988281 61988281 G T CSHL1 Missense_Mutation p.S5Y 0.11 deleterious(0.03) probably_damaging(0.982) TCGA-56-8626-01 17 72322448 72322448 T A KIF19 5'UTR 0.18 TCGA-56-8626-01 17 72322449 72322449 G T KIF19 5'UTR 0.17 TCGA-56-8626-01 17 76697832 76697832 C G CYTH1 Missense_Mutation p.D120H 0.13 deleterious(0.03) possibly_damaging(0.746) TCGA-56-8626-01 17 78444670 78444670 G A NPTX1 Silent p.I414I 0.25 TCGA-56-8626-01 18 11851543 11851543 G C CHMP1B Silent p.L11L 0.25 TCGA-56-8626-01 18 331736 331736 C T COLEC12 Nonsense_Mutation p.W665* 0.13 TCGA-56-8626-01 18 42533027 42533028 - T SETBP1 Frame_Shift_Ins p.W1242Lfs*13 0.17 TCGA-56-8626-01 18 60241546 60241546 T C ZCCHC2 Silent p.D744D 0.22 TCGA-56-8626-01 18 7231156 7231156 G T LRRC30 Missense_Mutation p.R7M 0.17 deleterious_low_confidence(0.02) benign(0.41) TCGA-56-8626-01 18 72999721 72999721 T G TSHZ1 Missense_Mutation p.Y742D 0.21 tolerated(0.16) benign(0.091) TCGA-56-8626-01 19 11890998 11890998 G T ZNF441 Missense_Mutation p.C120F 0.23 tolerated(0.71) benign(0.233) TCGA-56-8626-01 19 12874482 12874482 C A HOOK2 Missense_Mutation p.E646D 0.24 deleterious(0) probably_damaging(0.952) TCGA-56-8626-01 19 13470438 13470438 C A CACNA1A Missense_Mutation p.W320C 0.12 probably_damaging(0.95) TCGA-56-8626-01 19 14854508 14854508 C T EMR2 Missense_Mutation p.V758I 0.17 tolerated(0.15) benign(0.361) TCGA-56-8626-01 19 16860134 16860134 C G NWD1 Silent p.L227L 0.21 TCGA-56-8626-01 19 18888262 18888262 C G CRTC1 3'UTR 0.13 TCGA-56-8626-01 19 3157811 3157811 A T GNA15 Missense_Mutation p.N277I 0.15 deleterious(0) probably_damaging(0.991) TCGA-56-8626-01 19 34263119 34263119 G T CHST8 Silent p.L142L 0.27 TCGA-56-8626-01 19 36340544 36340544 C A NPHS1 Missense_Mutation p.R207L 0.26 tolerated(0.52) benign(0.008) TCGA-56-8626-01 19 375791 375791 T C THEG Silent p.P60P 0.19 TCGA-56-8626-01 19 38621192 38621192 G T SIPA1L3 Missense_Mutation p.G975W 0.24 deleterious(0) probably_damaging(1) TCGA-56-8626-01 19 38621193 38621193 G A SIPA1L3 Missense_Mutation p.G975E 0.23 deleterious(0) probably_damaging(0.998) TCGA-56-8626-01 19 38896158 38896158 G C FAM98C Splice_Site p.X212_splice 0.15 TCGA-56-8626-01 19 41388186 41388186 G A CYP2A7 5'UTR 0.24 TCGA-56-8626-01 19 42486075 42486075 T C ATP1A3 Missense_Mutation p.T406A 0.21 deleterious(0.03) probably_damaging(0.996) TCGA-56-8626-01 19 46307672 46307674 CAG AT RSPH6A Frame_Shift_Del p.L497Mfs*61 0.22 TCGA-56-8626-01 19 50981231 50981231 C T EMC10 Silent p.L54L 0.23 TCGA-56-8626-01 19 52447602 52447602 G T ZNF613 Missense_Mutation p.G156W 0.18 deleterious(0) possibly_damaging(0.573) TCGA-56-8626-01 19 53794441 53794441 G A BIRC8 5'UTR 0.44 TCGA-56-8626-01 19 54744967 54744967 C T LILRA6 Missense_Mutation p.G232D 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-56-8626-01 19 55666159 55666159 C A TNNI3 Missense_Mutation p.D108Y 0.15 deleterious(0.01) benign(0.132) TCGA-56-8626-01 19 5693455 5693455 C A LONP1 Missense_Mutation p.G853C 0.17 deleterious(0) probably_damaging(1) TCGA-56-8626-01 19 57723941 57723941 C T ZNF264 Silent p.F492F 0.27 TCGA-56-8626-01 19 6375782 6375782 G T PSPN Missense_Mutation p.R27S 0.15 tolerated_low_confidence(0.46) benign(0.03) TCGA-56-8626-01 19 8619607 8619607 G A MYO1F Silent p.L54L 0.20 TCGA-56-8626-01 19 9089369 9089369 T G MUC16 Missense_Mutation p.T816P 0.05 unknown(0) TCGA-56-8626-01 1 100327094 100327094 C T AGL Nonsense_Mutation p.Q40* 0.18 TCGA-56-8626-01 1 103461426 103461426 A T COL11A1 Silent p.G778G 0.17 TCGA-56-8626-01 1 152058927 152058927 T C TCHHL1 Missense_Mutation p.K411E 0.22 tolerated(0.1) benign(0.149) TCGA-56-8626-01 1 154574798 154574798 C T ADAR Missense_Mutation p.G107E 0.17 tolerated(0.41) benign(0.002) TCGA-56-8626-01 1 156627517 156627517 G C BCAN Missense_Mutation p.G754R 0.12 deleterious(0) probably_damaging(1) TCGA-56-8626-01 1 167666725 167666725 T A RCSD1 Silent p.S288S 0.31 TCGA-56-8626-01 1 176661393 176661393 C G PAPPA2 Missense_Mutation p.Q855E 0.16 deleterious(0) possibly_damaging(0.869) TCGA-56-8626-01 1 17740095 17740095 G T RCC2 Missense_Mutation p.P382H 0.16 deleterious(0.01) probably_damaging(1) TCGA-56-8626-01 1 19422072 19422072 G A UBR4 Silent p.N4531N 0.20 TCGA-56-8626-01 1 200880735 200880735 A T C1orf106 Missense_Mutation p.S372C 0.19 deleterious(0) probably_damaging(0.994) TCGA-56-8626-01 1 204915838 204915838 T G NFASC Intron 0.22 TCGA-56-8626-01 1 207785297 207785297 T C CR1 Silent p.D2162D 0.16 TCGA-56-8626-01 1 220953520 220953520 A T MARC2 Missense_Mutation p.T275S 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-56-8626-01 1 224345280 224345280 A G FBXO28 Silent p.Q313Q 0.18 TCGA-56-8626-01 1 228333723 228333723 C G GUK1 Intron 0.19 TCGA-56-8626-01 1 232577559 232577559 C A SIPA1L2 Nonsense_Mutation p.G1165* 0.19 TCGA-56-8626-01 1 235590489 235590489 G T TBCE Missense_Mutation p.L165F 0.17 tolerated(0.14) benign(0.216) TCGA-56-8626-01 1 243801015 243801015 T C AKT3 Silent p.L153L 0.19 TCGA-56-8626-01 1 245847541 245847541 C G KIF26B Missense_Mutation p.S755R 0.20 deleterious(0.02) unknown(0) TCGA-56-8626-01 1 247162657 247162657 T C ZNF695 Silent p.R84R 0.26 TCGA-56-8626-01 1 247695780 247695780 C A OR2C3 Missense_Mutation p.V12F 0.26 tolerated(0.26) benign(0.125) TCGA-56-8626-01 1 248343953 248343953 T C OR2M2 Silent p.I222I 0.12 TCGA-56-8626-01 1 249106507 249106507 G A SH3BP5L Silent p.S258S 0.16 TCGA-56-8626-01 1 25549896 25549896 C A SYF2 Missense_Mutation p.R198L 0.14 deleterious(0) probably_damaging(0.995) TCGA-56-8626-01 1 27100846 27100847 AT - ARID1A Frame_Shift_Del p.Y1377Wfs*67 0.23 TCGA-56-8626-01 1 39879576 39879576 G T KIAA0754 Missense_Mutation p.E1077D 0.17 unknown(0) TCGA-56-8626-01 1 45232552 45232552 C T KIF2C Silent p.L676L 0.17 TCGA-56-8626-01 1 47761515 47761515 A G STIL Missense_Mutation p.L236P 0.13 deleterious(0) probably_damaging(0.99) TCGA-56-8626-01 1 60297846 60297846 A G HOOK1 Silent p.V78V 0.11 TCGA-56-8626-01 1 65332797 65332797 G C JAK1 Missense_Mutation p.L248V 0.10 tolerated(0.5) probably_damaging(0.996) TCGA-56-8626-01 1 70618156 70618156 C T LRRC40 Missense_Mutation p.E467K 0.08 tolerated(0.31) benign(0.15) TCGA-56-8626-01 1 74954891 74954891 G T TNNI3K Nonsense_Mutation p.E815* 0.16 TCGA-56-8626-01 1 87045119 87045119 C T CLCA4 Silent p.S735S 0.14 TCGA-56-8626-01 1 95657371 95657371 C G TMEM56 Missense_Mutation p.H247D 0.12 tolerated(0.18) benign(0) TCGA-56-8626-01 20 22563027 22563027 C T FOXA2 Missense_Mutation p.G285R 0.24 deleterious(0.04) benign(0.097) TCGA-56-8626-01 20 25657460 25657460 C T ZNF337 Missense_Mutation p.S155N 0.17 tolerated(0.58) benign(0.213) TCGA-56-8626-01 20 33567477 33567477 G A MYH7B Missense_Mutation p.R113H 0.06 possibly_damaging(0.747) TCGA-56-8626-01 20 36640771 36640771 C G TTI1 Missense_Mutation p.R483T 0.04 deleterious(0.03) possibly_damaging(0.811) TCGA-56-8626-01 20 40042107 40042107 C T CHD6 Missense_Mutation p.E2330K 0.39 tolerated(0.16) possibly_damaging(0.496) TCGA-56-8626-01 20 42205014 42205014 G C SGK2 Missense_Mutation p.D342H 0.13 deleterious(0) probably_damaging(0.995) TCGA-56-8626-01 20 4776535 4776535 C T RASSF2 Silent p.Q71Q 0.11 TCGA-56-8626-01 20 57896166 57896166 C T EDN3 Missense_Mutation p.R154W 0.21 tolerated(0.13) benign(0.001) TCGA-56-8626-01 20 858920 858920 G T ANGPT4 Missense_Mutation p.H368Q 0.17 deleterious(0.01) probably_damaging(0.976) TCGA-56-8626-01 21 22790821 22790821 G A NCAM2 Missense_Mutation p.G471E 0.18 deleterious(0) probably_damaging(1) TCGA-56-8626-01 21 31655180 31655180 C G KRTAP24-1 Missense_Mutation p.C24S 0.17 deleterious(0) possibly_damaging(0.849) TCGA-56-8626-01 21 35199121 35199121 G A ITSN1 Splice_Site p.X1062_splice 0.13 TCGA-56-8626-01 21 40834352 40834352 G A SH3BGR Missense_Mutation p.D96N 0.20 deleterious(0.04) possibly_damaging(0.486) TCGA-56-8626-01 21 46066529 46066530 TG - KRTAP10-11 Frame_Shift_Del p.S54Qfs*9 0.16 TCGA-56-8626-01 21 47545427 47545427 G T COL6A2 Missense_Mutation p.S622I 0.16 deleterious(0) probably_damaging(0.999) TCGA-56-8626-01 22 19751843 19751843 C T TBX1 Silent p.N226N 0.41 TCGA-56-8626-01 22 19754285 19754285 A G TBX1 Silent p.P461P 0.15 TCGA-56-8626-01 22 22036746 22036746 C G PPIL2 Missense_Mutation p.I136M 0.09 deleterious(0.01) benign(0.167) TCGA-56-8626-01 22 39268248 39268248 C T CBX6 5'UTR 0.50 TCGA-56-8626-01 2 103335031 103335031 T A MFSD9 Missense_Mutation p.I425F 0.23 deleterious(0.01) possibly_damaging(0.703) TCGA-56-8626-01 2 103335032 103335032 G T MFSD9 Silent p.I424I 0.24 TCGA-56-8626-01 2 141130699 141130699 C A LRP1B Missense_Mutation p.C3549F 0.16 possibly_damaging(0.639) TCGA-56-8626-01 2 141130700 141130700 A T LRP1B Missense_Mutation p.C3549S 0.14 benign(0.415) TCGA-56-8626-01 2 158485088 158485088 C A ACVR1C Silent p.S23S 0.14 TCGA-56-8626-01 2 165986727 165986727 A G SCN3A Missense_Mutation p.L882P 0.15 deleterious(0) probably_damaging(1) TCGA-56-8626-01 2 179611751 179611751 G A TTN Intron 0.10 TCGA-56-8626-01 2 202899837 202899837 C T FZD7 Missense_Mutation p.A156V 0.16 tolerated(0.27) benign(0.096) TCGA-56-8626-01 2 204161235 204161235 A G CYP20A1 Missense_Mutation p.K396R 0.25 tolerated(0.08) benign(0.371) TCGA-56-8626-01 2 21234457 21234457 G A APOB Silent p.G1761G 0.16 TCGA-56-8626-01 2 219689084 219689084 G C PRKAG3 Missense_Mutation p.A405G 0.18 deleterious(0) probably_damaging(0.997) TCGA-56-8626-01 2 233245165 233245165 G A ALPP Missense_Mutation p.M276I 0.09 tolerated(0.4) benign(0.001) TCGA-56-8626-01 2 237172791 237172791 C A ASB18 Missense_Mutation p.M66I 0.19 deleterious(0.05) benign(0.004) TCGA-56-8626-01 2 27551036 27551036 C G GTF3C2 Silent p.L759L 0.18 TCGA-56-8626-01 2 27600837 27600837 C G ZNF513 Missense_Mutation p.D401H 0.17 deleterious(0) benign(0.026) TCGA-56-8626-01 2 29259561 29259561 C A FAM179A Missense_Mutation p.S858Y 0.16 deleterious(0) probably_damaging(0.986) TCGA-56-8626-01 2 51254968 51254968 C A NRXN1 Silent p.T148T 0.15 TCGA-56-8626-01 2 55544868 55544868 T A CCDC88A Missense_Mutation p.E1144V 0.12 deleterious(0) possibly_damaging(0.471) TCGA-56-8626-01 2 68364547 68364547 C G WDR92 Missense_Mutation p.D218H 0.14 deleterious(0) probably_damaging(1) TCGA-56-8626-01 2 73717115 73717115 G T ALMS1 Missense_Mutation p.D2676Y 0.21 possibly_damaging(0.812) TCGA-56-8626-01 2 79312717 79312717 G C REG1B Missense_Mutation p.H112D 0.12 deleterious(0.01) possibly_damaging(0.576) TCGA-56-8626-01 2 95537451 95537451 G C TEKT4 Missense_Mutation p.E43Q 0.15 deleterious(0) probably_damaging(1) TCGA-56-8626-01 3 129270118 129270118 A T H1FOO Nonsense_Mutation p.R326* 0.11 TCGA-56-8626-01 3 130286091 130286091 A G COL6A6 Missense_Mutation p.I610V 0.16 deleterious(0) probably_damaging(0.977) TCGA-56-8626-01 3 133475749 133475749 G A TF Missense_Mutation p.E256K 0.16 tolerated(0.45) benign(0.02) TCGA-56-8626-01 3 146318135 146318135 A G PLSCR5 Silent p.P43P 0.30 TCGA-56-8626-01 3 157177904 157177904 T C VEPH1 Intron 0.16 TCGA-56-8626-01 3 167183177 167183178 - A SERPINI2 Frame_Shift_Ins p.S228Ffs*2 0.13 TCGA-56-8626-01 3 170587992 170587992 C A RPL22L1 5'UTR 0.11 TCGA-56-8626-01 3 193176979 193176979 G C ATP13A4 Missense_Mutation p.P522R 0.08 deleterious(0.01) probably_damaging(0.993) TCGA-56-8626-01 3 195497130 195497130 G A MUC4 Missense_Mutation p.T4452M 0.16 possibly_damaging(0.556) TCGA-56-8626-01 3 197444926 197444926 G C KIAA0226 Silent p.V47V 0.13 TCGA-56-8626-01 3 2613213 2613213 T A CNTN4 Missense_Mutation p.V9E 0.23 deleterious(0) benign(0.317) TCGA-56-8626-01 3 419557 419557 G T CHL1 Missense_Mutation p.G603V 0.31 deleterious(0) probably_damaging(0.99) TCGA-56-8626-01 3 46586715 46586715 C A LRRC2 Nonsense_Mutation p.E52* 0.25 TCGA-56-8626-01 3 51696600 51696600 G A RAD54L2 Missense_Mutation p.E1190K 0.22 tolerated_low_confidence(0.6) benign(0.135) TCGA-56-8626-01 3 58849601 58849601 C A C3orf67 Nonsense_Mutation p.E301* 0.11 TCGA-56-8626-01 3 93780160 93780160 G A DHFRL1 Nonsense_Mutation p.R66* 0.21 TCGA-56-8626-01 3 98189196 98189196 A T OR5K1 Missense_Mutation p.Y259F 0.21 deleterious(0) probably_damaging(0.998) TCGA-56-8626-01 4 1017730 1017730 G T FGFRL1 Missense_Mutation p.D187Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-56-8626-01 4 114279353 114279353 A T ANK2 Silent p.I3193I 0.16 TCGA-56-8626-01 4 126369613 126369613 T C FAT4 Intron 0.19 TCGA-56-8626-01 4 1369292 1369292 G C UVSSA Missense_Mutation p.A477P 0.16 tolerated(0.58) benign(0.001) TCGA-56-8626-01 4 156757840 156757840 C A ASIC5 Splice_Site p.X412_splice 0.18 TCGA-56-8626-01 4 175238617 175238617 T C CEP44 Intron 0.15 TCGA-56-8626-01 4 17528723 17528723 C A CLRN2 3'UTR 0.12 TCGA-56-8626-01 4 186559307 186559307 T A SORBS2 Intron 0.23 TCGA-56-8626-01 4 266199 266199 T C ZNF732 Silent p.V149V 0.43 TCGA-56-8626-01 4 2877698 2877698 C T ADD1 Missense_Mutation p.P19L 0.17 deleterious(0) probably_damaging(1) TCGA-56-8626-01 4 55161482 55161482 T A PDGFRA 3'UTR 0.22 TCGA-56-8626-01 4 679919 679919 G C MFSD7 Missense_Mutation p.P156R 0.19 deleterious(0) probably_damaging(0.981) TCGA-56-8626-01 4 70898893 70898893 C A HTN3 Missense_Mutation p.H38N 0.22 deleterious_low_confidence(0.02) possibly_damaging(0.607) TCGA-56-8626-01 4 71508339 71508339 C A ENAM Missense_Mutation p.A399E 0.04 deleterious(0) possibly_damaging(0.875) TCGA-56-8626-01 4 73205321 73205321 C A ADAMTS3 Missense_Mutation p.A251S 0.19 tolerated(0.12) benign(0.142) TCGA-56-8626-01 4 77290654 77290654 C A CCDC158 Silent p.R424R 0.16 TCGA-56-8626-01 4 77290655 77290655 C A CCDC158 Missense_Mutation p.R424L 0.16 deleterious(0.03) probably_damaging(0.986) TCGA-56-8626-01 4 85560119 85560119 T A CDS1 Missense_Mutation p.F285I 0.07 tolerated(0.53) benign(0.084) TCGA-56-8626-01 5 101572553 101572553 T G SLCO4C1 3'UTR 0.08 TCGA-56-8626-01 5 140222442 140222442 G A PCDHA8 Silent p.T512T 0.25 TCGA-56-8626-01 5 140794201 140794201 G C PCDHGA10 Missense_Mutation p.E487Q 0.28 deleterious_low_confidence(0.05) benign(0.15) TCGA-56-8626-01 5 169508846 169508846 C T DOCK2 Missense_Mutation p.A1763V 0.31 tolerated_low_confidence(0.08) benign(0.046) TCGA-56-8626-01 5 169535606 169535606 C A FOXI1 Silent p.T376T 0.21 TCGA-56-8626-01 5 256552 256552 G C SDHA 3'UTR 0.10 TCGA-56-8626-01 5 32090942 32090942 A G PDZD2 Missense_Mutation p.K2463R 0.03 tolerated(0.64) benign(0.036) TCGA-56-8626-01 5 32263313 32263313 T G MTMR12 Missense_Mutation p.T207P 0.03 deleterious(0.02) possibly_damaging(0.772) TCGA-56-8626-01 5 3599485 3599485 G T IRX1 Silent p.T141T 0.08 TCGA-56-8626-01 5 37201797 37201797 C T C5orf42 Missense_Mutation p.D1135N 0.03 tolerated(0.2) benign(0.059) TCGA-56-8626-01 5 38482184 38482184 C T LIFR Missense_Mutation p.R936H 0.07 deleterious(0.02) benign(0.136) TCGA-56-8626-01 5 40841694 40841694 G A CARD6 Silent p.A70A 0.70 TCGA-56-8626-01 5 41186284 41186284 C G C6 Missense_Mutation p.R205T 0.09 deleterious(0) possibly_damaging(0.894) TCGA-56-8626-01 5 427920 427920 A G AHRR Splice_Site p.X259_splice 0.05 TCGA-56-8626-01 5 5466574 5466574 T G KIAA0947 Missense_Mutation p.L2007W 0.07 deleterious(0) probably_damaging(0.999) TCGA-56-8626-01 5 76989091 76989091 T C TBCA Silent p.L82L 0.22 TCGA-56-8626-01 5 7827068 7827068 T C ADCY2 3'UTR 0.11 TCGA-56-8626-01 5 86685254 86685259 CCTGTC - RASA1 In_Frame_Del p.L991_S992del 0.21 TCGA-56-8626-01 6 100897533 100897533 C A SIM1 Missense_Mutation p.A131S 0.11 tolerated(1) benign(0.057) TCGA-56-8626-01 6 107390271 107390271 G A BEND3 Silent p.V708V 0.17 TCGA-56-8626-01 6 10924759 10924759 A T SYCP2L Missense_Mutation p.Y368F 0.14 tolerated(0.25) benign(0.045) TCGA-56-8626-01 6 118596693 118596693 G A SLC35F1 Missense_Mutation p.E237K 0.21 deleterious(0) possibly_damaging(0.507) TCGA-56-8626-01 6 1313374 1313374 C G FOXQ1 Missense_Mutation p.I145M 0.21 deleterious(0) probably_damaging(1) TCGA-56-8626-01 6 132910544 132910544 G C TAAR5 Silent p.R94R 0.23 TCGA-56-8626-01 6 151151822 151151822 G T PLEKHG1 Silent p.A525A 0.17 TCGA-56-8626-01 6 152755015 152755015 G T SYNE1 Missense_Mutation p.S1459Y 0.12 probably_damaging(0.987) TCGA-56-8626-01 6 169648977 169648977 G T THBS2 Silent p.P48P 0.16 TCGA-56-8626-01 6 169648978 169648978 G T THBS2 Missense_Mutation p.P48H 0.16 tolerated(0.09) benign(0.013) TCGA-56-8626-01 6 26390379 26390379 A T BTN2A2 Missense_Mutation p.R291W 0.33 deleterious(0) possibly_damaging(0.765) TCGA-56-8626-01 6 38690895 38690895 C T DNAH8 5'Flank 0.21 TCGA-56-8626-01 6 69943275 69943275 C T BAI3 Silent p.T858T 0.17 TCGA-56-8626-01 6 7862726 7862726 C A BMP6 Missense_Mutation p.A400D 0.30 tolerated(0.21) benign(0.081) TCGA-56-8626-01 6 99374652 99374652 C T FBXL4 Missense_Mutation p.M71I 0.16 tolerated(0.45) probably_damaging(0.958) TCGA-56-8626-01 6 99860506 99860506 A G PNISR Silent p.D66D 0.26 TCGA-56-8626-01 7 100859603 100859603 C G PLOD3 Missense_Mutation p.D115H 0.09 deleterious(0) possibly_damaging(0.843) TCGA-56-8626-01 7 127326672 127326672 C T SND1 Silent p.L28L 0.11 TCGA-56-8626-01 7 136700049 136700049 C G CHRM2 Missense_Mutation p.A146G 0.20 tolerated(0.08) possibly_damaging(0.817) TCGA-56-8626-01 7 137773449 137773449 G T AKR1D1 Nonsense_Mutation p.E66* 0.19 TCGA-56-8626-01 7 141490798 141490798 C G TAS2R5 Missense_Mutation p.R213G 0.18 tolerated(0.28) benign(0.107) TCGA-56-8626-01 7 143056449 143056449 T A FAM131B Missense_Mutation p.I80F 0.17 deleterious(0) possibly_damaging(0.804) TCGA-56-8626-01 7 19744517 19744517 T A TWISTNB Missense_Mutation p.D94V 0.17 deleterious(0) probably_damaging(1) TCGA-56-8626-01 7 19744518 19744518 C T TWISTNB Missense_Mutation p.D94N 0.17 deleterious(0.04) probably_damaging(1) TCGA-56-8626-01 7 50097656 50097656 G A ZPBP Missense_Mutation p.T139I 0.26 deleterious(0.04) probably_damaging(0.996) TCGA-56-8626-01 7 50605656 50605656 C G DDC Missense_Mutation p.E113Q 0.13 deleterious(0.01) probably_damaging(1) TCGA-56-8626-01 7 57187628 57187628 A G ZNF479 Silent p.C498C 0.18 TCGA-56-8626-01 7 98987627 98987627 C T ARPC1B Silent p.F164F 0.23 TCGA-56-8626-01 8 104709373 104709373 C T RIMS2 Missense_Mutation p.S79L 0.13 deleterious_low_confidence(0) benign(0.182) TCGA-56-8626-01 8 123964739 123964739 G C ZHX2 Missense_Mutation p.R330P 0.23 deleterious(0) probably_damaging(0.999) TCGA-56-8626-01 8 128428255 128428255 G T POU5F1B Silent p.G48G 0.41 TCGA-56-8626-01 8 133923640 133923640 C G TG Missense_Mutation p.L1341V 0.05 tolerated(1) benign(0.001) TCGA-56-8626-01 8 142178386 142178386 G T DENND3 Silent p.T599T 0.35 TCGA-56-8626-01 8 143695281 143695281 C T ARC Missense_Mutation p.E118K 0.15 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-56-8626-01 8 1645444 1645444 G A DLGAP2 Missense_Mutation p.M896I 0.15 tolerated(0.59) benign(0) TCGA-56-8626-01 8 24187525 24187525 G C ADAM28 Missense_Mutation p.A334P 0.23 deleterious(0) probably_damaging(0.99) TCGA-56-8626-01 8 2800114 2800114 G T CSMD1 Missense_Mutation p.P3472Q 0.29 benign(0.054) TCGA-56-8626-01 8 2967777 2967777 C A CSMD1 Missense_Mutation p.D2171Y 0.22 probably_damaging(0.993) TCGA-56-8626-01 8 48874090 48874090 G T MCM4 Missense_Mutation p.A29S 0.13 tolerated(0.74) benign(0.005) TCGA-56-8626-01 8 48889385 48889385 G A MCM4 3'UTR 0.19 TCGA-56-8626-01 8 55541857 55541857 C G RP1 Silent p.L1805L 0.25 TCGA-56-8626-01 8 57080631 57080631 T G PLAG1 Missense_Mutation p.Q66H 0.10 tolerated(0.43) benign(0.003) TCGA-56-8626-01 8 62412136 62412136 C T CLVS1 3'UTR 0.12 TCGA-56-8626-01 8 66517666 66517666 C G ARMC1 Missense_Mutation p.L191F 0.15 deleterious(0.01) probably_damaging(0.938) TCGA-56-8626-01 8 87638262 87638262 G T CNGB3 Silent p.A509A 0.17 TCGA-56-8626-01 9 140100080 140100080 G T TMEM203 5'UTR 0.38 TCGA-56-8626-01 9 140351958 140351958 G T NSMF Missense_Mutation p.P177T 0.24 tolerated_low_confidence(0.06) benign(0.011) TCGA-56-8626-01 9 14792807 14792807 G T FREM1 Missense_Mutation p.D1305E 0.20 deleterious(0) probably_damaging(0.999) TCGA-56-8626-01 9 3288213 3288213 T G RFX3 Missense_Mutation p.K257Q 0.16 deleterious(0) probably_damaging(0.994) TCGA-56-8626-01 9 34241972 34241972 C T UBAP1 Missense_Mutation p.H381Y 0.15 tolerated(0.15) benign(0.029) TCGA-56-8626-01 9 35079624 35079624 C G FANCG 5'UTR 0.24 TCGA-56-8626-01 9 35664081 35664081 G T ARHGEF39 Missense_Mutation p.L133I 0.11 deleterious(0.05) probably_damaging(0.99) TCGA-56-8626-01 9 36966557 36966557 T C PAX5 Missense_Mutation p.K257E 0.17 deleterious(0) possibly_damaging(0.744) TCGA-56-8626-01 9 78722248 78722248 G T PCSK5 Missense_Mutation p.A397S 0.24 deleterious(0) probably_damaging(1) TCGA-56-8626-01 9 99160557 99160557 G - ZNF367 Frame_Shift_Del p.R154Afs*3 0.18 TCGA-56-8626-01 X 117706375 117706375 T C DOCK11 Silent p.T375T 0.29 TCGA-56-8626-01 X 118544222 118544222 G T SLC25A43 Missense_Mutation p.R196L 0.43 tolerated(0.24) benign(0.11) TCGA-56-8626-01 X 152686403 152686403 C A ZFP92 Missense_Mutation p.R190S 0.33 tolerated(0.65) possibly_damaging(0.688) TCGA-56-8626-01 X 153132820 153132820 G T L1CAM Missense_Mutation p.P710T 0.35 deleterious(0.01) probably_damaging(0.986) TCGA-56-8626-01 X 154158785 154158785 C A F8 Nonsense_Mutation p.E1094* 0.42 TCGA-56-8626-01 X 29973657 29973657 A T IL1RAPL1 Missense_Mutation p.H604L 0.38 tolerated_low_confidence(0.26) benign(0.276) TCGA-56-8626-01 X 40568654 40568654 G C MED14 Missense_Mutation p.Q411E 0.50 tolerated(0.09) possibly_damaging(0.633) TCGA-56-8626-01 X 48663851 48663851 G T HDAC6 Silent p.P106P 0.38 TCGA-56-8626-01 X 53250098 53250098 C G KDM5C Missense_Mutation p.D51H 0.36 deleterious(0) probably_damaging(0.937) TCGA-56-8626-01 X 73963469 73963469 C A KIAA2022 Missense_Mutation p.C308F 0.40 deleterious(0) probably_damaging(1) TCGA-56-8626-01 X 91873706 91873706 C A PCDH11X Missense_Mutation p.Q1271K 0.39 tolerated_low_confidence(0.2) benign(0.034) TCGA-56-8628-01 10 112649290 112649290 G T PDCD4 Splice_Site p.X260_splice 0.20 TCGA-56-8628-01 10 118321033 118321033 G T PNLIP Missense_Mutation p.V407L 0.26 tolerated(0.86) benign(0.002) TCGA-56-8628-01 10 127789738 127789738 C T ADAM12 Missense_Mutation p.V275I 0.16 tolerated(0.83) benign(0.006) TCGA-56-8628-01 10 13212992 13212992 A T MCM10 Silent p.S26S 0.31 TCGA-56-8628-01 10 13217514 13217514 C T MCM10 Silent p.P200P 0.18 TCGA-56-8628-01 10 134008370 134008370 C T DPYSL4 Missense_Mutation p.T112M 0.19 deleterious(0.02) benign(0.116) TCGA-56-8628-01 10 15828559 15828559 C A FAM188A Splice_Site p.X372_splice 0.17 TCGA-56-8628-01 10 28233185 28233185 C A ARMC4 Missense_Mutation p.R570L 0.21 deleterious(0) possibly_damaging(0.541) TCGA-56-8628-01 10 31815770 31815770 T A ZEB1 Missense_Mutation p.Y986N 0.31 deleterious(0) probably_damaging(0.998) TCGA-56-8628-01 10 34400305 34400305 C G PARD3 Missense_Mutation p.R1288P 0.16 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-56-8628-01 10 47087418 47087418 C A NPY4R Missense_Mutation p.T212N 0.13 deleterious(0.02) benign(0.005) TCGA-56-8628-01 10 48370716 48370716 G T ZNF488 Missense_Mutation p.V62L 0.14 tolerated(0.71) benign(0.01) TCGA-56-8628-01 10 71695112 71695112 G T COL13A1 Missense_Mutation p.G568W 0.33 deleterious(0) probably_damaging(1) TCGA-56-8628-01 10 71695113 71695113 G T COL13A1 Missense_Mutation p.G568V 0.33 deleterious(0) probably_damaging(1) TCGA-56-8628-01 10 90773103 90773103 A G FAS Missense_Mutation p.T219A 0.11 tolerated(0.5) benign(0.002) TCGA-56-8628-01 10 98129978 98129978 A T TLL2 Nonsense_Mutation p.C919* 0.14 TCGA-56-8628-01 10 98129979 98129979 C T TLL2 Missense_Mutation p.C919Y 0.14 deleterious(0) probably_damaging(1) TCGA-56-8628-01 11 104900400 104900400 C A CASP1 Missense_Mutation p.C285F 0.17 deleterious(0) probably_damaging(1) TCGA-56-8628-01 11 1078364 1078364 C A MUC2 Silent p.S217S 0.15 TCGA-56-8628-01 11 107966395 107966395 G C CUL5 Missense_Mutation p.A628P 0.17 tolerated(0.53) benign(0.005) TCGA-56-8628-01 11 1093675 1093675 A G MUC2 Missense_Mutation p.S1832G 0.19 unknown(0) TCGA-56-8628-01 11 111487006 111487006 G T SIK2 Missense_Mutation p.V59L 0.14 tolerated(0.18) probably_damaging(0.998) TCGA-56-8628-01 11 112042757 112042757 G C TEX12 3'UTR 0.29 TCGA-56-8628-01 11 113078036 113078036 G T NCAM1 Missense_Mutation p.G287C 0.15 deleterious(0.01) probably_damaging(0.92) TCGA-56-8628-01 11 114392929 114392929 G C NXPE1 Missense_Mutation p.P327A 0.23 deleterious(0.01) probably_damaging(0.981) TCGA-56-8628-01 11 1213602 1213602 C T MUC5AC RNA 0.23 TCGA-56-8628-01 11 122850033 122850033 T C BSX Missense_Mutation p.Q132R 0.17 deleterious(0) probably_damaging(0.998) TCGA-56-8628-01 11 123625050 123625050 G A OR6X1 Silent p.F59F 0.16 TCGA-56-8628-01 11 123777834 123777834 G - OR8D4 Frame_Shift_Del p.G233Afs*13 0.14 TCGA-56-8628-01 11 124013199 124013199 G T VWA5A Missense_Mutation p.G692C 0.18 deleterious(0) probably_damaging(0.999) TCGA-56-8628-01 11 124294626 124294626 A T OR8B4 Missense_Mutation p.L48I 0.19 deleterious_low_confidence(0.02) benign(0.007) TCGA-56-8628-01 11 126318984 126318984 G T KIRREL3 Missense_Mutation p.T306K 0.26 deleterious(0) possibly_damaging(0.81) TCGA-56-8628-01 11 129321351 129321351 G T BARX2 3'UTR 0.24 TCGA-56-8628-01 11 134226283 134226283 A G GLB1L2 Missense_Mutation p.K216R 0.20 tolerated(0.08) benign(0.03) TCGA-56-8628-01 11 28106199 28106199 C A KIF18A Missense_Mutation p.A352S 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-56-8628-01 11 32452146 32452146 G C WT1 Intron 0.21 TCGA-56-8628-01 11 34501715 34501715 T C ELF5 3'UTR 0.28 TCGA-56-8628-01 11 40137699 40137699 A T LRRC4C Silent p.P48P 0.34 TCGA-56-8628-01 11 48328019 48328019 A T OR4S1 Missense_Mutation p.D82V 0.18 deleterious(0) benign(0.403) TCGA-56-8628-01 11 49598052 49598052 C G RP11-707M1.1 RNA 0.17 TCGA-56-8628-01 11 50003448 50003448 A G OR4C12 Missense_Mutation p.V197A 0.21 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-56-8628-01 11 5142761 5142761 C A OR52A4 RNA 0.24 TCGA-56-8628-01 11 55405933 55405933 A T OR4P4 Missense_Mutation p.I34F 0.45 tolerated(0.14) benign(0.02) TCGA-56-8628-01 11 55797963 55797963 C A OR5AS1 Silent p.L23L 0.20 TCGA-56-8628-01 11 56086676 56086676 T C OR8K3 Silent p.Y298Y 0.14 TCGA-56-8628-01 11 56949654 56949654 G A LRRC55 Missense_Mutation p.S96N 0.13 deleterious(0.05) benign(0.002) TCGA-56-8628-01 11 57235089 57235089 C T RTN4RL2 Silent p.A13A 0.18 TCGA-56-8628-01 11 57958351 57958351 T A OR9Q2 Missense_Mutation p.L130Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-56-8628-01 11 58035397 58035397 G C OR10W1 5'UTR 0.26 TCGA-56-8628-01 11 59245019 59245019 G C OR4D10 Missense_Mutation p.L39F 0.19 deleterious(0.01) benign(0.365) TCGA-56-8628-01 11 59622193 59622193 A T TCN1 Silent p.T351T 0.18 TCGA-56-8628-01 11 59943034 59943034 C T MS4A6A Silent p.V158V 0.15 TCGA-56-8628-01 11 60198331 60198331 G T MS4A5 Missense_Mutation p.L72F 0.21 tolerated(0.51) benign(0.015) TCGA-56-8628-01 11 61507949 61507949 A C DAGLA Missense_Mutation p.E623A 0.16 tolerated(0.22) probably_damaging(0.986) TCGA-56-8628-01 11 65651167 65651167 C T CTSW 3'UTR 0.15 TCGA-56-8628-01 11 66357800 66357800 C A CCDC87 3'UTR 0.32 TCGA-56-8628-01 11 75439091 75439091 T A MOGAT2 Silent p.I184I 0.22 TCGA-56-8628-01 11 84634234 84634234 T C DLG2 Intron 0.22 TCGA-56-8628-01 11 89531752 89531752 A G TRIM49 Missense_Mutation p.L302P 0.12 deleterious(0) possibly_damaging(0.841) TCGA-56-8628-01 11 89868764 89868764 T A NAALAD2 Silent p.S40S 0.18 TCGA-56-8628-01 11 92616199 92616199 C T FAT3 Nonsense_Mutation p.Q4193* 0.14 TCGA-56-8628-01 11 92703044 92703044 C A MTNR1B Silent p.T51T 0.25 TCGA-56-8628-01 12 10134712 10134712 A G CLEC12A Missense_Mutation p.I219V 0.09 tolerated(0.05) benign(0.161) TCGA-56-8628-01 12 109016874 109016874 C A SELPLG Missense_Mutation p.D420Y 0.18 deleterious(0) probably_damaging(0.997) TCGA-56-8628-01 12 112220960 112220960 A T RP11-162P23.2 Splice_Site p.X70_splice 0.16 TCGA-56-8628-01 12 124796387 124796387 C A FAM101A 5'UTR 0.17 TCGA-56-8628-01 12 21422606 21422606 C A SLCO1A2 Missense_Mutation p.G630V 0.24 tolerated(0.15) benign(0.288) TCGA-56-8628-01 12 21636445 21636445 C A RECQL Missense_Mutation p.V189L 0.10 deleterious(0) probably_damaging(0.999) TCGA-56-8628-01 12 22068814 22068814 C A ABCC9 Missense_Mutation p.V202L 0.19 tolerated(0.23) possibly_damaging(0.839) TCGA-56-8628-01 12 22208478 22208478 G T CMAS Nonsense_Mutation p.G165* 0.18 TCGA-56-8628-01 12 24736693 24736693 A G LINC00477 RNA 0.15 TCGA-56-8628-01 12 26492306 26492306 T A ITPR2 3'UTR 0.18 TCGA-56-8628-01 12 301656 301657 - C SLC6A12 Frame_Shift_Ins p.P564Sfs*13 0.14 TCGA-56-8628-01 12 40001427 40001427 C A ABCD2 Nonsense_Mutation p.E404* 0.13 TCGA-56-8628-01 12 40158363 40158363 G T SLC2A13 Missense_Mutation p.A540E 0.15 deleterious(0) probably_damaging(0.992) TCGA-56-8628-01 12 4747281 4747281 G A AKAP3 Nonsense_Mutation p.Q28* 0.21 TCGA-56-8628-01 12 49251871 49251871 G A RND1 Missense_Mutation p.L203F 0.17 tolerated(0.7) benign(0.007) TCGA-56-8628-01 12 50186653 50186653 C A NCKAP5L Missense_Mutation p.D1153Y 0.24 deleterious(0) possibly_damaging(0.844) TCGA-56-8628-01 12 55846371 55846371 G A OR6C2 Missense_Mutation p.C125Y 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-56-8628-01 12 56814746 56814746 C A TIMELESS Splice_Site p.X1014_splice 0.17 TCGA-56-8628-01 12 57974895 57974895 C A KIF5A Missense_Mutation p.R899S 0.09 deleterious(0) probably_damaging(0.997) TCGA-56-8628-01 12 62148698 62148698 C G FAM19A2 Missense_Mutation p.G72R 0.11 deleterious(0.04) probably_damaging(1) TCGA-56-8628-01 12 6500110 6500110 C A LTBR 3'UTR 0.24 TCGA-56-8628-01 12 68595809 68595809 T C IL26 Missense_Mutation p.I140V 0.15 tolerated(0.96) benign(0.042) TCGA-56-8628-01 12 70932769 70932769 T C PTPRB Missense_Mutation p.Q1935R 0.27 deleterious(0.01) benign(0.349) TCGA-56-8628-01 12 75444822 75444822 C A KCNC2 Silent p.V321V 0.16 TCGA-56-8628-01 12 75444950 75444950 C A KCNC2 Missense_Mutation p.D279Y 0.16 deleterious(0.04) possibly_damaging(0.702) TCGA-56-8628-01 12 75444951 75444951 C T KCNC2 Silent p.T278T 0.16 TCGA-56-8628-01 12 78515818 78515818 C A NAV3 Missense_Mutation p.A1283E 0.21 tolerated(0.08) probably_damaging(1) TCGA-56-8628-01 12 8051644 8051644 G T NANOGP1 RNA 0.20 TCGA-56-8628-01 12 81101981 81101981 G T MYF6 Silent p.G161G 0.12 TCGA-56-8628-01 12 81110943 81110943 C G MYF5 Missense_Mutation p.P34R 0.19 deleterious(0.02) benign(0.012) TCGA-56-8628-01 12 99008017 99008017 G A IKBIP Silent p.S133S 0.10 TCGA-56-8628-01 13 109779770 109779770 G C MYO16 Missense_Mutation p.S1286T 0.33 tolerated(0.07) benign(0.027) TCGA-56-8628-01 13 111102787 111102787 C A COL4A2 Missense_Mutation p.P442Q 0.20 possibly_damaging(0.614) TCGA-56-8628-01 13 112722341 112722341 C - SOX1 Frame_Shift_Del p.R124Afs*82 0.38 TCGA-56-8628-01 13 25670320 25670320 G C PABPC3 5'UTR 0.19 TCGA-56-8628-01 13 99020381 99020381 C - FARP1 Frame_Shift_Del p.H110Qfs*8 0.19 TCGA-56-8628-01 14 102483513 102483513 A G DYNC1H1 Missense_Mutation p.N2646S 0.18 benign(0.118) TCGA-56-8628-01 14 106237676 106237676 G T IGHG3 Missense_Mutation p.A23E 0.16 deleterious(0) possibly_damaging(0.659) TCGA-56-8628-01 14 106321119 106321119 G T IGHM Silent p.I290I 0.13 TCGA-56-8628-01 14 107083521 107083521 G T IGHV4-59 Missense_Mutation p.P28Q 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.89) TCGA-56-8628-01 14 20248796 20248796 C G OR4M1 Missense_Mutation p.H105Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-56-8628-01 14 20344846 20344846 G T OR4K2 Silent p.V140V 0.11 TCGA-56-8628-01 14 20482606 20482606 C G OR4K14 Silent p.T249T 0.18 TCGA-56-8628-01 14 20665614 20665614 C A OR11G2 Missense_Mutation p.S40R 0.18 tolerated(0.18) benign(0.058) TCGA-56-8628-01 14 20665615 20665615 C A OR11G2 Missense_Mutation p.P41T 0.16 tolerated(0.29) benign(0.002) TCGA-56-8628-01 14 20711614 20711614 A T OR11H4 Missense_Mutation p.M222L 0.16 tolerated(1) benign(0.001) TCGA-56-8628-01 14 20920305 20920305 G A OSGEP Missense_Mutation p.P80L 0.14 deleterious(0) probably_damaging(0.996) TCGA-56-8628-01 14 21550563 21550563 C T ARHGEF40 Missense_Mutation p.R1138W 0.13 deleterious(0.01) possibly_damaging(0.773) TCGA-56-8628-01 14 21863179 21863179 T C CHD8 Missense_Mutation p.K1761R 0.18 tolerated(0.61) benign(0.014) TCGA-56-8628-01 14 24524933 24524933 G T LRRC16B Silent p.V235V 0.20 TCGA-56-8628-01 14 32902715 32902715 G - AKAP6 Frame_Shift_Del p.V6* 0.09 TCGA-56-8628-01 14 35227968 35227970 ACA - BAZ1A In_Frame_Del p.V1443del 0.10 TCGA-56-8628-01 14 44974608 44974608 A G FSCB Missense_Mutation p.L528P 0.15 tolerated(0.06) benign(0.001) TCGA-56-8628-01 14 44975151 44975151 A C FSCB Missense_Mutation p.L347R 0.18 tolerated(0.4) possibly_damaging(0.883) TCGA-56-8628-01 14 58055997 58055997 G - SLC35F4 Frame_Shift_Del p.P211Qfs*8 0.18 TCGA-56-8628-01 14 59113801 59113801 G - DACT1 Frame_Shift_Del p.K821Rfs*10 0.16 TCGA-56-8628-01 14 64586156 64586156 A G SYNE2 Silent p.T4284T 0.24 TCGA-56-8628-01 14 65264515 65264515 G T SPTB Silent p.R372R 0.19 TCGA-56-8628-01 14 74766292 74766292 G A ABCD4 Silent p.L82L 0.24 TCGA-56-8628-01 14 81209601 81209601 T G CEP128 Missense_Mutation p.Q875P 0.28 deleterious(0) possibly_damaging(0.686) TCGA-56-8628-01 14 90429696 90429696 G T TDP1 Missense_Mutation p.G80C 0.15 tolerated_low_confidence(0.05) possibly_damaging(0.504) TCGA-56-8628-01 14 90429697 90429697 G T TDP1 Missense_Mutation p.G80V 0.15 tolerated_low_confidence(0.31) benign(0.002) TCGA-56-8628-01 14 95053772 95053772 C T SERPINA5 Missense_Mutation p.R25W 0.23 tolerated(0.08) benign(0.014) TCGA-56-8628-01 14 95056393 95056393 G A SERPINA5 Missense_Mutation p.S212N 0.20 tolerated(0.08) benign(0.034) TCGA-56-8628-01 15 23412197 23412197 C - RP11-467N20.5 Frame_Shift_Del p.G87Afs*29 0.14 TCGA-56-8628-01 15 23811449 23811449 G T MKRN3 Missense_Mutation p.A174S 0.16 tolerated(0.26) possibly_damaging(0.77) TCGA-56-8628-01 15 23931207 23931207 T A NDN 3'UTR 0.22 TCGA-56-8628-01 15 25223591 25223591 G T SNRPN Nonstop_Mutation p.*241Yext*17 0.20 TCGA-56-8628-01 15 29092295 29092295 C T GOLGA6L7P RNA 0.17 TCGA-56-8628-01 15 33893707 33893707 C A RYR3 Silent p.R626R 0.20 TCGA-56-8628-01 15 34093017 34093017 C G RYR3 Missense_Mutation p.R3293G 0.19 benign(0.004) TCGA-56-8628-01 15 35085652 35085652 T A ACTC1 Missense_Mutation p.D83V 0.13 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-56-8628-01 15 40558392 40558415 TTCAGGGTGCCTCGCAGCGCTGTC - PAK6 In_Frame_Del p.F185_C192del 0.28 TCGA-56-8628-01 15 42361088 42361088 C A PLA2G4D Missense_Mutation p.G761V 0.16 tolerated(0.07) possibly_damaging(0.533) TCGA-56-8628-01 15 42458788 42458788 T A VPS39 Missense_Mutation p.R527W 0.22 deleterious(0) probably_damaging(0.995) TCGA-56-8628-01 15 43452920 43452921 TG - TMEM62 Frame_Shift_Del p.V409Sfs*4 0.12 TCGA-56-8628-01 15 43498738 43498738 C T EPB42 Missense_Mutation p.E500K 0.18 tolerated(0.12) benign(0.069) TCGA-56-8628-01 15 48779286 48779286 C A FBN1 Missense_Mutation p.R1192M 0.09 possibly_damaging(0.484) TCGA-56-8628-01 15 48797227 48797227 C A FBN1 Missense_Mutation p.C652F 0.07 probably_damaging(0.993) TCGA-56-8628-01 15 48797229 48797229 C A FBN1 Silent p.V651V 0.07 TCGA-56-8628-01 15 51830629 51830629 C A DMXL2 Missense_Mutation p.G376C 0.15 tolerated(0.1) probably_damaging(0.979) TCGA-56-8628-01 15 53889424 53889424 G T WDR72 Missense_Mutation p.H1000Q 0.17 tolerated(0.36) benign(0.009) TCGA-56-8628-01 15 58476240 58476240 T C AQP9 Missense_Mutation p.V265A 0.22 deleterious(0.05) benign(0.002) TCGA-56-8628-01 15 66220784 66220784 A C MEGF11 Missense_Mutation p.C552G 0.16 tolerated(0.34) benign(0.005) TCGA-56-8628-01 15 72700088 72700088 G A TMEM202 Missense_Mutation p.V226I 0.13 tolerated(0.29) benign(0.017) TCGA-56-8628-01 15 75653456 75653456 C A MAN2C1 Missense_Mutation p.G464V 0.15 deleterious(0) probably_damaging(0.976) TCGA-56-8628-01 15 77407096 77407096 G A PEAK1 Missense_Mutation p.P1548L 0.13 tolerated(0.34) benign(0.024) TCGA-56-8628-01 15 82444264 82444264 T A EFTUD1 Missense_Mutation p.Q844L 0.18 tolerated(0.08) benign(0.005) TCGA-56-8628-01 15 83328673 83328673 C G AP3B2 Missense_Mutation p.D1008H 0.21 tolerated(0.07) possibly_damaging(0.861) TCGA-56-8628-01 15 83428112 83428112 G T FSD2 Silent p.V746V 0.09 TCGA-56-8628-01 15 91162991 91162991 C T CRTC3 Missense_Mutation p.R240C 0.15 deleterious(0) probably_damaging(0.969) TCGA-56-8628-01 15 93528809 93528809 G A CHD2 Missense_Mutation p.D1107N 0.20 tolerated(0.16) benign(0.122) TCGA-56-8628-01 16 12450136 12450136 G T SNX29 Silent p.P633P 0.33 TCGA-56-8628-01 16 2164658 2164658 C A PKD1 Missense_Mutation p.G789V 0.33 probably_damaging(0.993) TCGA-56-8628-01 16 22157594 22157594 T C VWA3A Missense_Mutation p.M923T 0.19 deleterious(0.03) benign(0.098) TCGA-56-8628-01 16 22926930 22926930 C T HS3ST2 3'UTR 0.19 TCGA-56-8628-01 16 22926931 22926931 C A HS3ST2 3'UTR 0.19 TCGA-56-8628-01 16 2347394 2347394 G A ABCA3 Silent p.I733I 0.05 TCGA-56-8628-01 16 27518461 27518474 TCGTCTTCCATGAA - GTF3C1 Frame_Shift_Del p.F416Rfs*49 0.16 TCGA-56-8628-01 16 2868688 2868688 C T PRSS21 Missense_Mutation p.L90F 0.15 tolerated(0.68) benign(0.01) TCGA-56-8628-01 16 29896910 29896910 C A SEZ6L2 Nonsense_Mutation p.E457* 0.24 TCGA-56-8628-01 16 30002258 30002258 G T TAOK2 3'Flank 0.18 TCGA-56-8628-01 16 3063944 3063944 G A CLDN9 Missense_Mutation p.R194H 0.18 tolerated(0.59) benign(0.339) TCGA-56-8628-01 16 31405652 31405652 G T ITGAD Missense_Mutation p.G43C 0.12 deleterious(0) probably_damaging(0.911) TCGA-56-8628-01 16 31422710 31422710 T C ITGAD Silent p.L527L 0.22 TCGA-56-8628-01 16 48125098 48125098 C A ABCC12 Missense_Mutation p.C1073F 0.15 deleterious(0) benign(0.076) TCGA-56-8628-01 16 48250074 48250074 T C ABCC11 Missense_Mutation p.Y301C 0.19 tolerated(0.05) possibly_damaging(0.762) TCGA-56-8628-01 16 50745497 50745497 G T NOD2 Missense_Mutation p.G559C 0.16 deleterious(0.03) possibly_damaging(0.687) TCGA-56-8628-01 16 56704472 56704472 C A MT1H Missense_Mutation p.S28Y 0.12 deleterious(0) unknown(0) TCGA-56-8628-01 16 70942664 70942664 G C HYDIN Missense_Mutation p.A2702G 0.12 possibly_damaging(0.866) TCGA-56-8628-01 16 72170482 72170482 G T PMFBP1 Missense_Mutation p.D356E 0.20 tolerated(1) benign(0.034) TCGA-56-8628-01 16 76556093 76556093 G T CNTNAP4 Missense_Mutation p.K825N 0.11 tolerated(0.21) benign(0.035) TCGA-56-8628-01 16 77353964 77353964 C T ADAMTS18 Missense_Mutation p.A772T 0.22 tolerated(0.11) possibly_damaging(0.474) TCGA-56-8628-01 16 88713549 88713549 G A CYBA Missense_Mutation p.P55S 0.27 tolerated(0.1) probably_damaging(0.94) TCGA-56-8628-01 17 10430101 10430101 G T MYH2 Silent p.A1334A 0.24 TCGA-56-8628-01 17 11532849 11532849 T C DNAH9 Missense_Mutation p.M489T 0.24 benign(0) TCGA-56-8628-01 17 11684323 11684323 C A DNAH9 Intron 0.24 TCGA-56-8628-01 17 11783472 11783472 C A DNAH9 Missense_Mutation p.P3519H 0.16 probably_damaging(0.977) TCGA-56-8628-01 17 1657746 1657746 G C SERPINF2 Missense_Mutation p.R465P 0.20 tolerated(0.07) benign(0.008) TCGA-56-8628-01 17 18061950 18061950 C T MYO15A Silent p.P3027P 0.30 TCGA-56-8628-01 17 25639357 25639357 C G WSB1 Missense_Mutation p.P410A 0.24 deleterious(0) probably_damaging(0.998) TCGA-56-8628-01 17 34072873 34072873 G T GAS2L2 Missense_Mutation p.S548Y 0.40 tolerated(0.35) benign(0.333) TCGA-56-8628-01 17 36003415 36003415 G A DDX52 Missense_Mutation p.A12V 0.25 tolerated(0.17) benign(0.001) TCGA-56-8628-01 17 39389224 39389224 T C KRTAP9-3 Silent p.S157S 0.24 TCGA-56-8628-01 17 45914492 45914492 T C LRRC46 3'UTR 0.18 TCGA-56-8628-01 17 57288735 57288735 A T SMG8 Missense_Mutation p.E441D 0.32 deleterious(0) probably_damaging(0.988) TCGA-56-8628-01 17 6538488 6538488 A C KIAA0753 5'UTR 0.29 TCGA-56-8628-01 17 67125797 67125797 C A ABCA6 Missense_Mutation p.G296V 0.14 deleterious(0) probably_damaging(0.993) TCGA-56-8628-01 17 67125798 67125798 C A ABCA6 Missense_Mutation p.G296C 0.14 deleterious(0) probably_damaging(0.999) TCGA-56-8628-01 17 7077577 7077577 C G ASGR1 Missense_Mutation p.W158C 0.26 deleterious(0) probably_damaging(0.997) TCGA-56-8628-01 17 7577127 7577127 C A TP53 Nonsense_Mutation p.E271* 0.18 TCGA-56-8628-01 18 13092488 13092488 C G CEP192 Missense_Mutation p.F2072L 0.18 tolerated(0.46) benign(0.027) TCGA-56-8628-01 18 2590146 2590146 G T NDC80 Nonsense_Mutation p.E334* 0.12 TCGA-56-8628-01 18 31226226 31226226 C - ASXL3 Frame_Shift_Del p.P89Qfs*8 0.28 TCGA-56-8628-01 18 40857212 40857212 C A SYT4 Splice_Site p.X12_splice 0.13 TCGA-56-8628-01 18 50961574 50961574 T A DCC Missense_Mutation p.L1075Q 0.17 tolerated(0.46) benign(0.321) TCGA-56-8628-01 18 67727162 67727162 C T RTTN Missense_Mutation p.D1622N 0.21 tolerated(0.52) benign(0.004) TCGA-56-8628-01 18 74962804 74962804 C G GALR1 Silent p.T100T 0.12 TCGA-56-8628-01 19 10531604 10531604 C T PDE4A Missense_Mutation p.A55V 0.39 deleterious_low_confidence(0.01) benign(0.264) TCGA-56-8628-01 19 21606339 21606339 A G ZNF493 Missense_Mutation p.Y293C 0.28 deleterious(0.03) probably_damaging(1) TCGA-56-8628-01 19 30505886 30505886 A G URI1 Silent p.P506P 0.19 TCGA-56-8628-01 19 3207429 3207429 A G NCLN Missense_Mutation p.I532V 0.31 deleterious(0.04) possibly_damaging(0.751) TCGA-56-8628-01 19 33372767 33372767 C G CEP89 Missense_Mutation p.Q706H 0.14 deleterious(0) possibly_damaging(0.568) TCGA-56-8628-01 19 36212319 36212319 G T KMT2B Missense_Mutation p.E690D 0.31 possibly_damaging(0.899) TCGA-56-8628-01 19 37211142 37211142 G A ZNF567 Missense_Mutation p.E475K 0.25 tolerated(0.08) possibly_damaging(0.747) TCGA-56-8628-01 19 3785105 3785105 C A MATK Intron 0.26 TCGA-56-8628-01 19 38160473 38160473 C A ZNF781 Nonsense_Mutation p.E193* 0.14 TCGA-56-8628-01 19 39787197 39787197 G T IFNL1 Nonsense_Mutation p.E46* 0.13 TCGA-56-8628-01 19 40366508 40366508 C A FCGBP Missense_Mutation p.G4576C 0.16 probably_damaging(0.999) TCGA-56-8628-01 19 41132953 41132953 C G LTBP4 Silent p.L1419L 0.16 TCGA-56-8628-01 19 41235108 41235108 G T ITPKC Silent p.G419G 0.18 TCGA-56-8628-01 19 41447303 41447303 G T AC092071.1 5'Flank 0.05 TCGA-56-8628-01 19 41515226 41515226 G T CYP2B6 Nonsense_Mutation p.E250* 0.13 TCGA-56-8628-01 19 41826375 41826375 G T CCDC97 Missense_Mutation p.S304I 0.15 deleterious(0) probably_damaging(0.953) TCGA-56-8628-01 19 43268254 43268254 A G PSG8 Missense_Mutation p.Y82H 0.14 deleterious(0.02) probably_damaging(1) TCGA-56-8628-01 19 50412023 50412023 C A NUP62 Nonsense_Mutation p.E348* 0.17 TCGA-56-8628-01 19 54403573 54403573 T - PRKCG Frame_Shift_Del p.H456Qfs*26 0.26 TCGA-56-8628-01 19 54849922 54849922 C A LILRA4 Nonsense_Mutation p.E34* 0.18 TCGA-56-8628-01 19 54969550 54969550 C G LENG8 Missense_Mutation p.A697G 0.16 deleterious(0.04) benign(0.133) TCGA-56-8628-01 19 55284950 55284950 G A KIR2DL1 Missense_Mutation p.G79E 0.18 tolerated(0.1) probably_damaging(1) TCGA-56-8628-01 19 55396700 55396700 G A FCAR Missense_Mutation p.D42N 0.21 tolerated(1) benign(0.001) TCGA-56-8628-01 19 55666176 55666176 G T TNNI3 Missense_Mutation p.A102D 0.13 tolerated(0.16) possibly_damaging(0.547) TCGA-56-8628-01 19 56443385 56443385 C A NLRP13 Missense_Mutation p.C98F 0.20 deleterious(0) probably_damaging(0.998) TCGA-56-8628-01 19 56539102 56539102 G A NLRP5 Silent p.L501L 0.15 TCGA-56-8628-01 19 579631 579631 C T BSG Silent p.L183L 0.32 TCGA-56-8628-01 19 58640239 58640239 C A ZNF329 Missense_Mutation p.C211F 0.16 deleterious(0.04) probably_damaging(0.979) TCGA-56-8628-01 19 6477415 6477416 - C DENND1C Frame_Shift_Ins p.P141Afs*8 0.27 TCGA-56-8628-01 19 9213298 9213298 C A OR7G2 Missense_Mutation p.G229C 0.41 deleterious(0.01) benign(0.303) TCGA-56-8628-01 19 9324843 9324843 G T OR7D4 Missense_Mutation p.S224Y 0.41 deleterious(0) probably_damaging(0.982) TCGA-56-8628-01 1 102270019 102270019 C T OLFM3 Silent p.L384L 0.16 TCGA-56-8628-01 1 107867250 107867250 A G NTNG1 Missense_Mutation p.Q198R 0.12 tolerated(0.44) benign(0.288) TCGA-56-8628-01 1 111215833 111215833 T A KCNA3 Missense_Mutation p.E533D 0.15 tolerated_low_confidence(0.13) benign(0.008) TCGA-56-8628-01 1 111857196 111857196 G A CHIA Missense_Mutation p.G98S 0.14 deleterious(0) probably_damaging(0.997) TCGA-56-8628-01 1 114399186 114399186 G T PTPN22 Missense_Mutation p.P155H 0.14 deleterious(0) probably_damaging(1) TCGA-56-8628-01 1 118598374 118598374 A G SPAG17 Missense_Mutation p.S902P 0.14 tolerated(0.19) possibly_damaging(0.576) TCGA-56-8628-01 1 145561545 145561545 G T ANKRD35 Missense_Mutation p.K411N 0.17 deleterious(0.03) benign(0.003) TCGA-56-8628-01 1 156642967 156642967 G A NES Missense_Mutation p.T338I 0.17 tolerated(0.07) possibly_damaging(0.52) TCGA-56-8628-01 1 156675339 156675339 C T CRABP2 5'UTR 0.16 TCGA-56-8628-01 1 158735765 158735765 C A OR6N1 Missense_Mutation p.K236N 0.14 deleterious(0) probably_damaging(0.998) TCGA-56-8628-01 1 159272097 159272097 C T FCER1A Intron 0.22 TCGA-56-8628-01 1 160580465 160580465 C A SLAMF1 3'UTR 0.24 TCGA-56-8628-01 1 161654911 161654911 G C RPL31P11 RNA 0.17 TCGA-56-8628-01 1 163043266 163043266 G - RGS4 Frame_Shift_Del p.A175Lfs*3 0.14 TCGA-56-8628-01 1 167407817 167407817 C G CD247 Missense_Mutation p.G97A 0.13 tolerated(0.11) probably_damaging(0.969) TCGA-56-8628-01 1 16802914 16802914 G C CROCCP3 RNA 0.18 TCGA-56-8628-01 1 169510174 169510174 G C F5 Missense_Mutation p.S1385C 0.13 deleterious_low_confidence(0.02) probably_damaging(0.944) TCGA-56-8628-01 1 169566325 169566325 G T SELP Missense_Mutation p.H599N 0.14 tolerated(0.55) benign(0.087) TCGA-56-8628-01 1 169676580 169676580 C A SELL Missense_Mutation p.Q174H 0.33 tolerated(0.07) benign(0.014) TCGA-56-8628-01 1 176833604 176833604 C A ASTN1 Missense_Mutation p.G1234V 0.21 deleterious_low_confidence(0.04) benign(0.002) TCGA-56-8628-01 1 176833605 176833605 C A ASTN1 Nonsense_Mutation p.G1234* 0.21 TCGA-56-8628-01 1 179564819 179564819 C A TDRD5 Missense_Mutation p.P233T 0.16 deleterious(0.03) benign(0.139) TCGA-56-8628-01 1 182638869 182638869 C A RGS8 Intron 0.18 TCGA-56-8628-01 1 203054639 203054639 C A MYOG Missense_Mutation p.G151W 0.10 tolerated(0.07) benign(0.321) TCGA-56-8628-01 1 203455842 203455842 G T PRELP Nonsense_Mutation p.G328* 0.23 TCGA-56-8628-01 1 216595461 216595461 G A USH2A Missense_Mutation p.A73V 0.06 benign(0.005) TCGA-56-8628-01 1 22202480 22202480 C A HSPG2 Missense_Mutation p.G1020V 0.10 possibly_damaging(0.744) TCGA-56-8628-01 1 222717137 222717137 C A HHIPL2 Missense_Mutation p.G239V 0.25 deleterious(0) probably_damaging(1) TCGA-56-8628-01 1 222717138 222717138 C A HHIPL2 Nonsense_Mutation p.G239* 0.25 TCGA-56-8628-01 1 222801743 222801743 G A MIA3 Missense_Mutation p.G394D 0.19 tolerated(0.1) possibly_damaging(0.87) TCGA-56-8628-01 1 22921764 22921764 A T EPHA8 Missense_Mutation p.T549S 0.10 tolerated(0.9) benign(0.013) TCGA-56-8628-01 1 232942137 232942137 G T MAP10 Silent p.P456P 0.25 TCGA-56-8628-01 1 235969271 235969271 T A LYST Silent p.L1055L 0.25 TCGA-56-8628-01 1 237780784 237780784 C G RYR2 Missense_Mutation p.Q1972E 0.26 probably_damaging(0.995) TCGA-56-8628-01 1 240421302 240421302 C A FMN2 Missense_Mutation p.L1375I 0.25 probably_damaging(0.928) TCGA-56-8628-01 1 24413143 24413143 C A MYOM3 Missense_Mutation p.G597C 0.13 deleterious(0.02) possibly_damaging(0.469) TCGA-56-8628-01 1 247978830 247978831 CC A OR14A16 Frame_Shift_Del p.L67Ffs*18 0.28 TCGA-56-8628-01 1 248309371 248309371 G T OR2M5 Missense_Mutation p.G308C 0.17 tolerated(0.55) benign(0.031) TCGA-56-8628-01 1 248436841 248436841 G A OR2T33 Silent p.R92R 0.18 TCGA-56-8628-01 1 248637500 248637500 C A OR2T3 Nonsense_Mutation p.Y283* 0.12 TCGA-56-8628-01 1 2938674 2938674 G A ACTRT2 Missense_Mutation p.A142T 0.23 deleterious(0.02) possibly_damaging(0.654) TCGA-56-8628-01 1 29652189 29652189 G T PTPRU 3'Flank 0.20 TCGA-56-8628-01 1 39318084 39318084 G T RRAGC Missense_Mutation p.L240M 0.19 deleterious(0) possibly_damaging(0.828) TCGA-56-8628-01 1 39318085 39318085 T A RRAGC Missense_Mutation p.Q239H 0.18 tolerated(0.08) benign(0.135) TCGA-56-8628-01 1 39318086 39318086 T G RRAGC Missense_Mutation p.Q239P 0.18 deleterious(0) probably_damaging(0.944) TCGA-56-8628-01 1 44684812 44684812 C T DMAP1 Nonsense_Mutation p.Q269* 0.18 TCGA-56-8628-01 1 45479735 45479735 G C UROD Missense_Mutation p.G210A 0.19 deleterious(0) probably_damaging(1) TCGA-56-8628-01 1 61554184 61554184 C T NFIA Missense_Mutation p.L176F 0.19 deleterious(0.01) probably_damaging(1) TCGA-56-8628-01 1 62232145 62232145 G T INADL Missense_Mutation p.Q128H 0.17 deleterious(0) possibly_damaging(0.793) TCGA-56-8628-01 1 64707384 64707384 G T UBE2U Missense_Mutation p.M215I 0.15 tolerated(0.22) benign(0.002) TCGA-56-8628-01 1 75596538 75596538 A T LHX8 Intron 0.28 TCGA-56-8628-01 1 75680354 75680354 A G SLC44A5 Missense_Mutation p.Y580H 0.20 deleterious(0.03) possibly_damaging(0.521) TCGA-56-8628-01 1 78560782 78560782 T C GIPC2 Silent p.F191F 0.23 TCGA-56-8628-01 1 86904585 86904585 A G CLCA2 Silent p.Q333Q 0.14 TCGA-56-8628-01 1 86965364 86965364 C A CLCA1 Missense_Mutation p.T794K 0.16 tolerated(0.97) benign(0.007) TCGA-56-8628-01 1 91182159 91182159 C A BARHL2 Silent p.R198R 0.21 TCGA-56-8628-01 1 94548997 94548997 G T ABCA4 Missense_Mutation p.L257I 0.15 tolerated(0.15) benign(0.146) TCGA-56-8628-01 1 99470093 99470093 G C LPPR5 Missense_Mutation p.C45W 0.13 deleterious(0) probably_damaging(0.997) TCGA-56-8628-01 20 10025174 10025174 A G ANKEF1 Missense_Mutation p.K227E 0.14 tolerated(0.19) possibly_damaging(0.672) TCGA-56-8628-01 20 10602035 10602035 A C SLX4IP Missense_Mutation p.K160T 0.21 deleterious(0.01) possibly_damaging(0.837) TCGA-56-8628-01 20 1286607 1286607 G A SNPH Missense_Mutation p.C465Y 0.25 deleterious(0) probably_damaging(1) TCGA-56-8628-01 20 1616872 1616872 G C SIRPG Missense_Mutation p.P237R 0.15 deleterious(0) possibly_damaging(0.706) TCGA-56-8628-01 20 2575584 2575584 C A TMC2 Missense_Mutation p.F349L 0.12 deleterious(0) possibly_damaging(0.799) TCGA-56-8628-01 20 30409500 30409500 C A MYLK2 Silent p.L244L 0.21 TCGA-56-8628-01 20 31622715 31622715 G A BPIFB6 Missense_Mutation p.S150N 0.21 tolerated(0.17) benign(0.376) TCGA-56-8628-01 20 33330803 33330803 G A NCOA6 Missense_Mutation p.A1086V 0.14 benign(0.016) TCGA-56-8628-01 20 36149624 36149624 C G NNAT 5'UTR 0.19 TCGA-56-8628-01 20 36775235 36775235 C A TGM2 Missense_Mutation p.G248V 0.17 deleterious(0) probably_damaging(1) TCGA-56-8628-01 20 36993379 36993379 T C LBP Silent p.Y298Y 0.20 TCGA-56-8628-01 20 37353683 37353683 G - SLC32A1 Frame_Shift_Del p.G106Afs*20 0.13 TCGA-56-8628-01 20 50715103 50715103 G T ZFP64 Missense_Mutation p.P66T 0.17 deleterious(0.04) benign(0.162) TCGA-56-8628-01 20 54823799 54823799 A G MC3R 5'UTR 0.16 TCGA-56-8628-01 20 55028068 55028068 C T CASS4 Silent p.I612I 0.13 TCGA-56-8628-01 20 56098193 56098193 C A CTCFL Missense_Mutation p.D229Y 0.15 deleterious(0.03) benign(0.114) TCGA-56-8628-01 20 62654186 62654186 G T PRPF6 Missense_Mutation p.S575I 0.21 deleterious(0) possibly_damaging(0.677) TCGA-56-8628-01 21 19775828 19775828 C G TMPRSS15 Missense_Mutation p.V38L 0.17 tolerated(0.74) benign(0.006) TCGA-56-8628-01 21 22841031 22841031 G A NCAM2 Missense_Mutation p.S608N 0.13 tolerated(0.05) benign(0.168) TCGA-56-8628-01 21 22910222 22910222 G C NCAM2 Missense_Mutation p.E820Q 0.13 deleterious(0.02) probably_damaging(0.997) TCGA-56-8628-01 21 30325563 30325563 C G LTN1 Missense_Mutation p.G1118A 0.22 tolerated(0.58) benign(0.106) TCGA-56-8628-01 21 31964933 31964933 G T KRTAP6-3 Missense_Mutation p.G50C 0.11 unknown(0) TCGA-56-8628-01 21 38480697 38480697 C A TTC3 Missense_Mutation p.A284E 0.16 deleterious(0) probably_damaging(0.929) TCGA-56-8628-01 21 44151888 44151888 G A PDE9A Missense_Mutation p.E91K 0.15 tolerated(0.29) benign(0.005) TCGA-56-8628-01 21 44151890 44151890 G T PDE9A Missense_Mutation p.E91D 0.15 tolerated(0.15) benign(0.014) TCGA-56-8628-01 21 45994463 45994463 C A KRTAP10-4 Nonsense_Mutation p.C276* 0.21 TCGA-56-8628-01 21 46602620 46602620 G A ADARB1 Missense_Mutation p.R400Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-56-8628-01 22 17625986 17625986 G T CECR5 Silent p.V155V 0.21 TCGA-56-8628-01 22 29107920 29107920 C A CHEK2 Missense_Mutation p.A300S 0.12 tolerated(0.91) benign(0.028) TCGA-56-8628-01 22 32643457 32643457 G C SLC5A4 Missense_Mutation p.R140G 0.12 deleterious(0) probably_damaging(1) TCGA-56-8628-01 22 36623637 36623637 C A APOL2 Missense_Mutation p.G276V 0.17 deleterious(0) probably_damaging(0.982) TCGA-56-8628-01 22 39629454 39629454 C T PDGFB Missense_Mutation p.G79E 0.24 tolerated(0.67) benign(0.2) TCGA-56-8628-01 22 50646950 50646950 G A SELO Intron 0.15 TCGA-56-8628-01 2 114258085 114258085 G C FOXD4L1 3'UTR 0.14 TCGA-56-8628-01 2 11765311 11765311 C A GREB1 Silent p.L1393L 0.15 TCGA-56-8628-01 2 119600591 119600591 G T EN1 Missense_Mutation p.L368M 0.16 deleterious(0.01) probably_damaging(1) TCGA-56-8628-01 2 127453786 127453786 C A GYPC 3'UTR 0.16 TCGA-56-8628-01 2 128334205 128334205 C T MYO7B Silent p.C257C 0.24 TCGA-56-8628-01 2 130897191 130897191 A C CCDC74B Missense_Mutation p.F360L 0.14 deleterious(0.05) possibly_damaging(0.624) TCGA-56-8628-01 2 132021714 132021714 C T POTEE Missense_Mutation p.R896C 0.11 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-56-8628-01 2 137814388 137814388 T C THSD7B Missense_Mutation p.C180R 0.15 deleterious(0) probably_damaging(0.989) TCGA-56-8628-01 2 138330039 138330039 A T THSD7B Missense_Mutation p.E1115D 0.17 tolerated(0.08) unknown(0) TCGA-56-8628-01 2 141707807 141707807 C A LRP1B Nonsense_Mutation p.E1045* 0.25 TCGA-56-8628-01 2 143913044 143913044 A T ARHGAP15 Splice_Site 0.22 TCGA-56-8628-01 2 15307264 15307264 C A NBAS Nonsense_Mutation p.E2342* 0.17 TCGA-56-8628-01 2 167300103 167300103 G A SCN7A Silent p.N570N 0.24 TCGA-56-8628-01 2 170131555 170131555 G C LRP2 Missense_Mutation p.Q656E 0.19 probably_damaging(0.997) TCGA-56-8628-01 2 179442721 179442721 G T TTN Missense_Mutation p.P22841T 0.14 TCGA-56-8628-01 2 179446418 179446418 C A TTN Missense_Mutation p.V22193F 0.14 TCGA-56-8628-01 2 179455382 179455382 G T TTN Missense_Mutation p.S20357Y 0.18 TCGA-56-8628-01 2 179532012 179532012 C A TTN Silent p.V11916V 0.15 TCGA-56-8628-01 2 179598194 179598194 C A TTN Missense_Mutation p.D5276Y 0.19 TCGA-56-8628-01 2 179606185 179606185 C A TTN Silent p.V3925V 0.15 TCGA-56-8628-01 2 196729066 196729066 C T DNAH7 Missense_Mutation p.R2438H 0.27 deleterious(0.02) possibly_damaging(0.563) TCGA-56-8628-01 2 197297904 197297904 T C HECW2 Missense_Mutation p.I82V 0.18 deleterious(0) probably_damaging(0.936) TCGA-56-8628-01 2 206921219 206921219 C A INO80D Missense_Mutation p.A223S 0.13 tolerated(0.35) benign(0.033) TCGA-56-8628-01 2 214239732 214239732 A G SPAG16 Splice_Site p.X278_splice 0.22 TCGA-56-8628-01 2 217315748 217315748 G T SMARCAL1 Silent p.L677L 0.27 TCGA-56-8628-01 2 217315749 217315749 G T SMARCAL1 Missense_Mutation p.D678Y 0.27 deleterious(0.04) possibly_damaging(0.797) TCGA-56-8628-01 2 218713359 218713359 G A TNS1 Silent p.D502D 0.24 TCGA-56-8628-01 2 219554590 219554590 G C STK36 Missense_Mutation p.W523C 0.18 deleterious(0) probably_damaging(1) TCGA-56-8628-01 2 227871826 227871826 G T COL4A4 3'UTR 0.12 TCGA-56-8628-01 2 227872251 227872251 G T COL4A4 Missense_Mutation p.S1621R 0.21 unknown(0) TCGA-56-8628-01 2 227984638 227984638 A G COL4A4 Silent p.P115P 0.17 TCGA-56-8628-01 2 228135649 228135649 C G COL4A3 Missense_Mutation p.P580R 0.19 benign(0.242) TCGA-56-8628-01 2 228882546 228882546 G C SPHKAP Missense_Mutation p.D1008E 0.16 tolerated(0.41) benign(0.349) TCGA-56-8628-01 2 233323626 233323626 G T ALPI Missense_Mutation p.G453C 0.20 deleterious(0) probably_damaging(0.997) TCGA-56-8628-01 2 238726170 238726170 T A RBM44 Missense_Mutation p.F204Y 0.14 deleterious(0.04) possibly_damaging(0.809) TCGA-56-8628-01 2 242194925 242194925 C T HDLBP Missense_Mutation p.G315D 0.15 deleterious(0.02) probably_damaging(0.996) TCGA-56-8628-01 2 27324371 27324371 C T CGREF1 Missense_Mutation p.G243E 0.12 tolerated(0.31) probably_damaging(0.972) TCGA-56-8628-01 2 29420433 29420433 G T ALK Missense_Mutation p.P1350T 0.28 deleterious(0) probably_damaging(0.999) TCGA-56-8628-01 2 39553350 39553350 A G MAP4K3 Missense_Mutation p.V200A 0.13 deleterious(0) probably_damaging(0.987) TCGA-56-8628-01 2 71681054 71681054 G A DYSF 5'UTR 0.31 TCGA-56-8628-01 2 71801404 71801404 G T DYSF Missense_Mutation p.R1102L 0.16 deleterious(0.01) probably_damaging(0.989) TCGA-56-8628-01 2 74166079 74166079 A T DGUOK Missense_Mutation p.Y62F 0.12 tolerated(0.68) benign(0.003) TCGA-56-8628-01 2 74734214 74734214 C A PCGF1 Missense_Mutation p.G52C 0.10 deleterious(0) probably_damaging(1) TCGA-56-8628-01 2 85066380 85066380 T C TRABD2A Missense_Mutation p.Y246C 0.26 deleterious(0) probably_damaging(0.998) TCGA-56-8628-01 2 85835908 85835908 C A C2orf68 3'UTR 0.25 TCGA-56-8628-01 2 89246888 89246888 A T IGKV1-5 Silent p.T94T 0.15 TCGA-56-8628-01 3 108117949 108117949 G T MYH15 Silent p.S1654S 0.17 TCGA-56-8628-01 3 108147456 108147456 G T MYH15 Silent p.L1215L 0.32 TCGA-56-8628-01 3 108298536 108298536 C A KIAA1524 Splice_Site p.X184_splice 0.27 TCGA-56-8628-01 3 108778650 108778650 T A MORC1 Intron 0.14 TCGA-56-8628-01 3 108819355 108819355 C T MORC1 Splice_Site p.X75_splice 0.24 TCGA-56-8628-01 3 112253138 112253138 C T ATG3 Missense_Mutation p.G281R 0.10 deleterious(0.02) benign(0.197) TCGA-56-8628-01 3 122419790 122419790 G T PARP14 Missense_Mutation p.V797F 0.15 deleterious(0.04) benign(0.011) TCGA-56-8628-01 3 127788586 127788586 G T SEC61A1 3'UTR 0.09 TCGA-56-8628-01 3 128755852 128755852 G A EFCC1 Silent p.E494E 0.12 TCGA-56-8628-01 3 128859320 128859320 G T ISY1 Silent p.G103G 0.15 TCGA-56-8628-01 3 129151216 129151216 C G MBD4 Intron 0.36 TCGA-56-8628-01 3 134825380 134825380 C T EPHB1 Missense_Mutation p.P299L 0.10 tolerated(0.21) benign(0.017) TCGA-56-8628-01 3 134880936 134880936 T A EPHB1 Missense_Mutation p.M500K 0.13 deleterious(0.02) benign(0.001) TCGA-56-8628-01 3 137781704 137781704 C A DZIP1L Missense_Mutation p.G753V 0.17 deleterious(0) benign(0.393) TCGA-56-8628-01 3 138400871 138400871 C A PIK3CB Missense_Mutation p.M814I 0.17 deleterious(0.01) possibly_damaging(0.697) TCGA-56-8628-01 3 140409911 140409911 A G TRIM42 Silent p.G654G 0.12 TCGA-56-8628-01 3 142277488 142277488 G T ATR Missense_Mutation p.S621R 0.15 deleterious(0) probably_damaging(0.927) TCGA-56-8628-01 3 147113710 147113710 C A ZIC4 Missense_Mutation p.C256F 0.11 deleterious(0) probably_damaging(0.998) TCGA-56-8628-01 3 147127919 147127919 C G ZIC1 Missense_Mutation p.P7R 0.16 deleterious_low_confidence(0.01) benign(0.152) TCGA-56-8628-01 3 148939565 148939565 T A CP Silent p.I5I 0.27 TCGA-56-8628-01 3 149192674 149192674 G A TM4SF4 Missense_Mutation p.G4R 0.19 tolerated(0.05) possibly_damaging(0.717) TCGA-56-8628-01 3 183898346 183898346 C G AP2M1 Intron 0.35 TCGA-56-8628-01 3 184585811 184585811 G T VPS8 Splice_Site p.X491_splice 0.62 TCGA-56-8628-01 3 185363360 185363360 G C IGF2BP2 Missense_Mutation p.Q587E 0.07 deleterious(0.05) benign(0.206) TCGA-56-8628-01 3 38126904 38126904 C T DLEC1 Silent p.P467P 0.19 TCGA-56-8628-01 3 42572402 42572402 G T VIPR1 Missense_Mutation p.W256C 0.19 deleterious(0.03) probably_damaging(1) TCGA-56-8628-01 3 64524891 64524891 G A ADAMTS9 Silent p.A1867A 0.25 TCGA-56-8628-01 3 85935427 85935427 G A CADM2 Missense_Mutation p.S153N 0.13 deleterious(0) probably_damaging(0.944) TCGA-56-8628-01 3 86115909 86115909 A G CADM2 Silent p.E430E 0.20 TCGA-56-8628-01 3 97596728 97596730 TTC - CRYBG3 In_Frame_Del p.S284del 0.16 TCGA-56-8628-01 4 109765678 109765678 G - COL25A1 Frame_Shift_Del p.M543Wfs*67 0.15 TCGA-56-8628-01 4 123377578 123377578 G T IL2 Silent p.L6L 0.22 TCGA-56-8628-01 4 13604438 13604438 G A BOD1L1 Silent p.S1362S 0.18 TCGA-56-8628-01 4 141321670 141321670 T A CLGN Missense_Mutation p.M179L 0.18 deleterious(0.01) probably_damaging(0.932) TCGA-56-8628-01 4 147795941 147795941 G C TTC29 Missense_Mutation p.D242E 0.09 tolerated(0.15) benign(0.147) TCGA-56-8628-01 4 162307136 162307136 C A FSTL5 Silent p.V769V 0.19 TCGA-56-8628-01 4 164272110 164272110 G C NPY5R Missense_Mutation p.V229L 0.21 tolerated(0.1) benign(0.057) TCGA-56-8628-01 4 169013832 169013832 G A ANXA10 5'UTR 0.11 TCGA-56-8628-01 4 169369797 169369797 C T DDX60L Missense_Mutation p.S377N 0.20 tolerated(1) benign(0.002) TCGA-56-8628-01 4 170625154 170625154 A T CLCN3 Silent p.P523P 0.27 TCGA-56-8628-01 4 17524573 17524573 G T CLRN2 Missense_Mutation p.V114F 0.15 deleterious(0) benign(0.386) TCGA-56-8628-01 4 175564898 175564898 T C GLRA3 3'UTR 0.17 TCGA-56-8628-01 4 177098756 177098756 C T WDR17 Missense_Mutation p.P1267L 0.10 deleterious(0) probably_damaging(0.999) TCGA-56-8628-01 4 177138016 177138016 A T ASB5 Missense_Mutation p.V272E 0.17 deleterious(0) possibly_damaging(0.581) TCGA-56-8628-01 4 2238077 2238077 G A HAUS3 Nonsense_Mutation p.Q486* 0.20 TCGA-56-8628-01 4 27010128 27010128 G C STIM2 Missense_Mutation p.D418H 0.14 deleterious(0) probably_damaging(0.999) TCGA-56-8628-01 4 42069198 42069198 C A SLC30A9 Missense_Mutation p.T414N 0.19 deleterious(0) probably_damaging(0.979) TCGA-56-8628-01 4 62903554 62903554 C G LPHN3 Missense_Mutation p.R1165G 0.10 deleterious(0.01) benign(0.182) TCGA-56-8628-01 4 66242723 66242723 G T EPHA5 Missense_Mutation p.L617I 0.38 tolerated(0.7) benign(0.003) TCGA-56-8628-01 4 74280824 74280824 T C ALB Silent p.Y377Y 0.13 TCGA-56-8628-01 5 115298362 115298362 C A AQPEP Silent p.A16A 0.15 TCGA-56-8628-01 5 115329439 115329439 G C AQPEP Missense_Mutation p.W421S 0.22 deleterious(0) probably_damaging(0.999) TCGA-56-8628-01 5 140237050 140237050 A T PCDHA10 Missense_Mutation p.I473F 0.15 deleterious_low_confidence(0) benign(0.329) TCGA-56-8628-01 5 140732148 140732148 A T PCDHGB1 Missense_Mutation p.Q774L 0.27 deleterious(0.03) benign(0.156) TCGA-56-8628-01 5 156482413 156482413 C A HAVCR1 Missense_Mutation p.G60C 0.24 deleterious(0.02) benign(0.168) TCGA-56-8628-01 5 156671403 156671403 C A ITK Missense_Mutation p.A455D 0.15 tolerated(0.12) benign(0.034) TCGA-56-8628-01 5 17354566 17354566 G T CTD-2139B15.2 RNA 0.21 TCGA-56-8628-01 5 178413946 178413946 C A GRM6 Missense_Mutation p.D465Y 0.14 deleterious(0) probably_damaging(0.995) TCGA-56-8628-01 5 19473424 19473424 G C CDH18 Missense_Mutation p.Q762E 0.34 tolerated(0.19) possibly_damaging(0.589) TCGA-56-8628-01 5 33938315 33938315 G T RXFP3 3'UTR 0.36 TCGA-56-8628-01 5 43161568 43161568 G T ZNF131 Missense_Mutation p.V197L 0.17 tolerated(0.54) benign(0.001) TCGA-56-8628-01 5 55406976 55406976 T A ANKRD55 Silent p.P533P 0.19 TCGA-56-8628-01 5 56545283 56545283 G A GPBP1 Silent p.Q291Q 0.27 TCGA-56-8628-01 5 6605420 6605420 C G NSUN2 Missense_Mutation p.R568P 0.08 deleterious(0) probably_damaging(0.988) TCGA-56-8628-01 5 70308500 70308500 C T NAIP Missense_Mutation p.M81I 0.43 deleterious(0.01) probably_damaging(0.93) TCGA-56-8628-01 5 72875922 72875922 T C UTP15 3'UTR 0.17 TCGA-56-8628-01 6 100054900 100054900 C T PRDM13 5'UTR 0.18 TCGA-56-8628-01 6 105609937 105609937 G T POPDC3 5'UTR 0.29 TCGA-56-8628-01 6 127898571 127898571 G A C6orf58 Missense_Mutation p.D81N 0.17 tolerated(0.37) benign(0.005) TCGA-56-8628-01 6 127912755 127912755 A C C6orf58 Silent p.G327G 0.11 TCGA-56-8628-01 6 130497149 130497149 A G SAMD3 Missense_Mutation p.L220S 0.25 tolerated(0.8) benign(0.019) TCGA-56-8628-01 6 132910102 132910102 C A TAAR5 Missense_Mutation p.G242W 0.26 deleterious(0) probably_damaging(1) TCGA-56-8628-01 6 133072446 133072446 G - VNN2 Frame_Shift_Del p.F346Lfs*24 0.18 TCGA-56-8628-01 6 13595762 13595762 A G SIRT5 Missense_Mutation p.K177E 0.21 tolerated(0.28) benign(0.001) TCGA-56-8628-01 6 144093525 144093525 G A PHACTR2 Missense_Mutation p.D455N 0.19 deleterious(0) probably_damaging(0.998) TCGA-56-8628-01 6 152651519 152651519 T A SYNE1 Missense_Mutation p.E4767D 0.19 probably_damaging(0.996) TCGA-56-8628-01 6 152665251 152665251 G T SYNE1 Missense_Mutation p.Q4064K 0.20 benign(0) TCGA-56-8628-01 6 152675973 152675973 G T SYNE1 Missense_Mutation p.Q3583K 0.20 benign(0.021) TCGA-56-8628-01 6 154587056 154587056 C A IPCEF1 Missense_Mutation p.G9V 0.19 deleterious(0.01) benign(0.165) TCGA-56-8628-01 6 155450898 155450898 G - TIAM2 Frame_Shift_Del p.G181Afs*18 0.14 TCGA-56-8628-01 6 161016565 161016565 C A LPA Missense_Mutation p.G1097V 0.15 deleterious(0) probably_damaging(0.999) TCGA-56-8628-01 6 163991952 163991952 G T QKI 3'UTR 0.17 TCGA-56-8628-01 6 24843684 24843684 G A FAM65B Silent p.A442A 0.30 TCGA-56-8628-01 6 25779524 25779524 G T SLC17A4 3'UTR 0.19 TCGA-56-8628-01 6 25850125 25850125 A G SLC17A3 Silent p.Y393Y 0.21 TCGA-56-8628-01 6 25921259 25921259 G C SLC17A2 Missense_Mutation p.S179R 0.20 deleterious(0) possibly_damaging(0.749) TCGA-56-8628-01 6 26189159 26189159 C A HIST1H4D Missense_Mutation p.G49V 0.22 deleterious(0.02) probably_damaging(0.926) TCGA-56-8628-01 6 26431779 26431779 A G BTN2A3P RNA 0.17 TCGA-56-8628-01 6 27776153 27776153 C T HIST1H2AI Silent p.L56L 0.18 TCGA-56-8628-01 6 30880148 30880148 G T GTF2H4 Missense_Mutation p.M334I 0.18 tolerated(0.3) benign(0.123) TCGA-56-8628-01 6 31750307 31750307 T C VARS Missense_Mutation p.N664S 0.18 tolerated(1) benign(0.002) TCGA-56-8628-01 6 32138350 32138350 C A AGPAT1 Missense_Mutation p.C121F 0.12 deleterious(0) probably_damaging(0.984) TCGA-56-8628-01 6 35089991 35089991 T G TCP11 Missense_Mutation p.K174Q 0.20 tolerated(0.21) benign(0.055) TCGA-56-8628-01 6 35277547 35277547 A T DEF6 Missense_Mutation p.Q66L 0.17 deleterious(0) possibly_damaging(0.852) TCGA-56-8628-01 6 35704864 35704864 G T ARMC12 5'UTR 0.11 TCGA-56-8628-01 6 43491295 43491295 T A XPO5 3'UTR 0.14 TCGA-56-8628-01 6 47682280 47682280 G T GPR115 Silent p.T433T 0.18 TCGA-56-8628-01 6 50011466 50011466 G T DEFB112 Missense_Mutation p.T55K 0.23 tolerated(0.1) benign(0.001) TCGA-56-8628-01 6 51799053 51799053 A G PKHD1 Silent p.D1992D 0.15 TCGA-56-8628-01 6 52109206 52109206 C A IL17F Missense_Mutation p.G8C 0.18 deleterious(0.04) benign(0.124) TCGA-56-8628-01 6 54173634 54173634 C A TINAG Missense_Mutation p.P96T 0.22 deleterious(0.02) possibly_damaging(0.863) TCGA-56-8628-01 6 54173635 54173635 C A TINAG Missense_Mutation p.P96H 0.21 deleterious(0) probably_damaging(0.997) TCGA-56-8628-01 6 70098872 70098872 T A BAI3 3'UTR 0.38 TCGA-56-8628-01 6 70859930 70859930 G T COL19A1 Missense_Mutation p.G677V 0.10 deleterious(0) probably_damaging(1) TCGA-56-8628-01 6 97247380 97247380 T C GPR63 Silent p.L76L 0.18 TCGA-56-8628-01 7 117432439 117432439 T A CTTNBP2 Missense_Mutation p.R271W 0.10 deleterious(0) possibly_damaging(0.812) TCGA-56-8628-01 7 127255642 127255642 T C PAX4 5'UTR 0.24 TCGA-56-8628-01 7 128483857 128483857 T C FLNC Missense_Mutation p.M940T 0.19 tolerated(0.07) benign(0.023) TCGA-56-8628-01 7 137308257 137308257 G A DGKI Missense_Mutation p.A283V 0.19 deleterious(0) probably_damaging(0.999) TCGA-56-8628-01 7 141766469 141766469 A G MGAM Intron 0.17 TCGA-56-8628-01 7 14188769 14188769 C A DGKB Missense_Mutation p.R801L 0.13 deleterious(0.01) benign(0.054) TCGA-56-8628-01 7 143078792 143078792 A T ZYX Missense_Mutation p.D43V 0.29 deleterious(0.03) unknown(0) TCGA-56-8628-01 7 143884111 143884111 T A ARHGEF35 Missense_Mutation p.I456F 0.15 tolerated(0.32) possibly_damaging(0.743) TCGA-56-8628-01 7 150558267 150558267 T A AOC1 Missense_Mutation p.F742L 0.15 tolerated(0.08) probably_damaging(0.996) TCGA-56-8628-01 7 154143366 154143366 T C DPP6 Missense_Mutation p.L104P 0.22 deleterious(0) probably_damaging(0.996) TCGA-56-8628-01 7 154664333 154664333 G T DPP6 Splice_Site p.X605_splice 0.29 TCGA-56-8628-01 7 20180760 20180760 C A MACC1 Missense_Mutation p.D790Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-56-8628-01 7 27187195 27187195 G T HOXA6 Nonsense_Mutation p.Y58* 0.17 TCGA-56-8628-01 7 30185801 30185801 G T MTURN Missense_Mutation p.W57C 0.20 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-56-8628-01 7 30951537 30951537 T G AQP1 Missense_Mutation p.F5V 0.17 tolerated(0.38) benign(0.013) TCGA-56-8628-01 7 31009350 31009350 C A GHRHR Intron 0.23 TCGA-56-8628-01 7 39612148 39612148 A G YAE1D1 Missense_Mutation p.H175R 0.21 tolerated(0.54) benign(0) TCGA-56-8628-01 7 44156466 44156466 C A POLD2 Missense_Mutation p.A244S 0.14 deleterious(0.01) probably_damaging(0.989) TCGA-56-8628-01 7 45222883 45222883 G C RAMP3 Missense_Mutation p.D107H 0.20 deleterious(0.04) probably_damaging(0.954) TCGA-56-8628-01 7 4798942 4798942 G C FOXK1 Missense_Mutation p.G471A 0.12 deleterious(0.01) possibly_damaging(0.831) TCGA-56-8628-01 7 72419059 72419059 C G POM121 3'UTR 0.19 TCGA-56-8628-01 7 72658669 72658669 C A GTF2IRD2P1 RNA 0.23 TCGA-56-8628-01 7 72985210 72985210 C A TBL2 Missense_Mutation p.G324V 0.13 tolerated(0.2) benign(0.272) TCGA-56-8628-01 7 82545310 82545310 C A PCLO Missense_Mutation p.A3998S 0.21 unknown(0) TCGA-56-8628-01 7 86468408 86468408 C G GRM3 Silent p.V526V 0.17 TCGA-56-8628-01 7 92848659 92848659 G A HEPACAM2 Missense_Mutation p.S62L 0.17 tolerated(0.1) possibly_damaging(0.85) TCGA-56-8628-01 8 100147280 100147280 T C VPS13B Missense_Mutation p.I447T 0.21 deleterious(0) possibly_damaging(0.507) TCGA-56-8628-01 8 110456973 110456973 G T PKHD1L1 Missense_Mutation p.M1625I 0.29 deleterious(0.02) possibly_damaging(0.764) TCGA-56-8628-01 8 110468522 110468522 G T PKHD1L1 Missense_Mutation p.L2302F 0.26 deleterious(0) probably_damaging(1) TCGA-56-8628-01 8 113529352 113529352 G T CSMD3 Missense_Mutation p.P1556Q 0.33 deleterious(0) probably_damaging(0.998) TCGA-56-8628-01 8 114326925 114326925 T A CSMD3 Silent p.T92T 0.28 TCGA-56-8628-01 8 124266113 124266113 T C ZHX1 Missense_Mutation p.K692E 0.31 deleterious(0.01) benign(0.093) TCGA-56-8628-01 8 22974426 22974426 C - TNFRSF10C Frame_Shift_Del p.P222Qfs*7 0.11 TCGA-56-8628-01 8 22974431 22974431 G A TNFRSF10C Missense_Mutation p.A223T 0.20 tolerated_low_confidence(0.07) unknown(0) TCGA-56-8628-01 8 2949159 2949159 T C CSMD1 Silent p.L2388L 0.27 TCGA-56-8628-01 8 33346250 33346250 A G MAK16 Splice_Site p.X59_splice 0.45 TCGA-56-8628-01 8 39128419 39128419 G A ADAM32 Silent p.Q729Q 0.22 TCGA-56-8628-01 8 41470430 41470430 G T AGPAT6 Missense_Mutation p.V288F 0.09 deleterious(0) probably_damaging(0.998) TCGA-56-8628-01 8 48706967 48706967 C A PRKDC Silent p.V3517V 0.13 TCGA-56-8628-01 8 51621505 51621505 C A SNTG1 Missense_Mutation p.S417R 0.31 tolerated(0.08) benign(0.078) TCGA-56-8628-01 8 77765947 77765947 A G ZFHX4 Missense_Mutation p.N2264D 0.16 possibly_damaging(0.598) TCGA-56-8628-01 8 77767845 77767845 C A ZFHX4 Silent p.A2896A 0.20 TCGA-56-8628-01 8 77775777 77775777 C A ZFHX4 Missense_Mutation p.P3276H 0.15 benign(0.223) TCGA-56-8628-01 8 88885210 88885210 C A DCAF4L2 Silent p.A330A 0.19 TCGA-56-8628-01 9 107379959 107379959 T C OR13C9 Missense_Mutation p.H176R 0.32 deleterious(0) possibly_damaging(0.661) TCGA-56-8628-01 9 125424457 125424457 C T OR1L1 Missense_Mutation p.H155Y 0.24 tolerated(0.08) possibly_damaging(0.501) TCGA-56-8628-01 9 130478614 130478614 G C PTRH1 5'UTR 0.36 TCGA-56-8628-01 9 139103199 139103199 G A QSOX2 Missense_Mutation p.A487V 0.26 deleterious(0.04) probably_damaging(0.951) TCGA-56-8628-01 9 139103200 139103200 C A QSOX2 Missense_Mutation p.A487S 0.27 deleterious(0) probably_damaging(0.997) TCGA-56-8628-01 9 35313912 35313912 G A UNC13B Missense_Mutation p.A365T 0.22 tolerated_low_confidence(0.43) benign(0.017) TCGA-56-8628-01 9 452047 452047 A T DOCK8 Missense_Mutation p.I2000F 0.10 deleterious(0) probably_damaging(1) TCGA-56-8628-01 X 10085171 10085171 G T WWC3 Missense_Mutation p.A358S 0.19 tolerated(0.08) probably_damaging(0.992) TCGA-56-8628-01 X 100912372 100912372 C A ARMCX2 Missense_Mutation p.G68V 0.42 tolerated_low_confidence(0.05) possibly_damaging(0.786) TCGA-56-8628-01 X 123538941 123538941 C A TENM1 Missense_Mutation p.E1777D 0.38 deleterious(0) benign(0.003) TCGA-56-8628-01 X 129629571 129629571 G T RP1-274L7.1 Intron 0.35 TCGA-56-8628-01 X 146295040 146295040 A G MIR513A1 RNA 0.40 TCGA-56-8628-01 X 148044389 148044389 G A AFF2 Missense_Mutation p.M945I 0.50 tolerated(0.53) benign(0) TCGA-56-8628-01 X 32459312 32459312 G T DMD Silent p.I1302I 0.23 TCGA-56-8628-01 X 38037547 38037547 T G SRPX Silent p.R50R 0.32 TCGA-56-8628-01 X 601744 601744 G C SHOX Missense_Mutation p.L185F 0.19 deleterious(0.04) probably_damaging(0.919) TCGA-56-8628-01 X 70346236 70346236 A T MED12 Missense_Mutation p.M863L 0.36 benign(0.001) TCGA-56-8628-01 X 75649159 75649159 G A MAGEE1 Missense_Mutation p.G279E 0.48 tolerated_low_confidence(0.63) benign(0.014) TCGA-56-8628-01 X 77913380 77913380 G T ZCCHC5 Missense_Mutation p.L180I 0.33 tolerated_low_confidence(0.06) benign(0.425) TCGA-56-8628-01 X 79962986 79962986 C A BRWD3 Missense_Mutation p.G831V 0.10 tolerated(0.21) benign(0.067) TCGA-56-8628-01 X 85211183 85211183 C T CHM Missense_Mutation p.G381R 0.35 deleterious(0.01) probably_damaging(1) TCGA-56-8628-01 X 86869440 86869440 G T KLHL4 Missense_Mutation p.L198F 0.28 deleterious(0) probably_damaging(0.959) TCGA-56-8629-01 10 21134235 21134235 C G NEBL Missense_Mutation p.K393N 0.50 tolerated(0.4) possibly_damaging(0.493) TCGA-56-8629-01 10 73122036 73122036 G A SLC29A3 Missense_Mutation p.A367T 0.69 deleterious(0) probably_damaging(0.993) TCGA-56-8629-01 10 85971999 85971999 G T CDHR1 Missense_Mutation p.A540S 0.42 tolerated(0.62) benign(0.158) TCGA-56-8629-01 11 103866869 103866869 T A PDGFD Missense_Mutation p.N145I 0.41 deleterious(0) probably_damaging(1) TCGA-56-8629-01 11 118403152 118403152 G T TMEM25 Missense_Mutation p.A120S 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-56-8629-01 11 120998503 120998503 G A TECTA Missense_Mutation p.C606Y 0.26 deleterious(0) probably_damaging(1) TCGA-56-8629-01 11 125514516 125514516 G A CHEK1 Nonsense_Mutation p.W404* 0.23 TCGA-56-8629-01 11 17483330 17483330 C A ABCC8 Nonsense_Mutation p.E208* 0.29 TCGA-56-8629-01 11 208810 208810 C T RIC8A 5'UTR 0.33 TCGA-56-8629-01 11 45671886 45671886 C T CHST1 Silent p.A196A 0.33 TCGA-56-8629-01 11 48238702 48238702 T C OR4B1 Missense_Mutation p.V114A 0.27 deleterious(0.01) benign(0.008) TCGA-56-8629-01 11 55340347 55340347 C T OR4C16 Silent p.F248F 0.18 TCGA-56-8629-01 11 56344610 56344610 C - OR5M10 Frame_Shift_Del p.M197Wfs*5 0.22 TCGA-56-8629-01 11 5699469 5699469 G C TRIM5 Missense_Mutation p.H237D 0.25 tolerated(0.09) benign(0.003) TCGA-56-8629-01 11 58034707 58034707 G C OR10W1 Silent p.S208S 0.20 TCGA-56-8629-01 11 60107433 60107433 C T MS4A6E 3'UTR 0.32 TCGA-56-8629-01 11 62437374 62437374 C T C11orf48 Missense_Mutation p.E44K 0.22 deleterious_low_confidence(0) benign(0.012) TCGA-56-8629-01 11 6245710 6245710 G C FAM160A2 Missense_Mutation p.R13G 0.26 tolerated(0.09) probably_damaging(0.95) TCGA-56-8629-01 11 64323424 64323424 C T SLC22A11 5'UTR 0.24 TCGA-56-8629-01 11 64662359 64662359 A G ATG2A 3'UTR 0.07 TCGA-56-8629-01 11 67372192 67372192 G T C11orf72 Missense_Mutation p.P117T 0.47 possibly_damaging(0.803) TCGA-56-8629-01 11 68204453 68204453 A T LRP5 Missense_Mutation p.D1366V 0.37 deleterious(0) probably_damaging(0.976) TCGA-56-8629-01 11 71939139 71939139 G T INPPL1 Intron 0.18 TCGA-56-8629-01 12 109186541 109186541 C A SSH1 Missense_Mutation p.D472Y 0.21 deleterious(0) possibly_damaging(0.463) TCGA-56-8629-01 12 109520483 109520483 A G USP30 Missense_Mutation p.T295A 0.23 tolerated(0.22) benign(0.007) TCGA-56-8629-01 12 118457571 118457571 G T RFC5 Nonsense_Mutation p.E89* 0.16 TCGA-56-8629-01 12 120582531 120582531 C G GCN1L1 Missense_Mutation p.G1755A 0.22 possibly_damaging(0.588) TCGA-56-8629-01 12 12978993 12978993 T A DDX47 Silent p.T365T 0.17 TCGA-56-8629-01 12 133372614 133372614 C G GOLGA3 Missense_Mutation p.E765Q 0.06 deleterious(0.01) possibly_damaging(0.877) TCGA-56-8629-01 12 21680107 21680107 G T C12orf39 Missense_Mutation p.M42I 0.13 tolerated(0.12) probably_damaging(0.961) TCGA-56-8629-01 12 29485596 29485596 G A FAR2 Missense_Mutation p.V441I 0.32 tolerated(0.75) benign(0.011) TCGA-56-8629-01 12 29689211 29689211 C G TMTC1 Missense_Mutation p.K572N 0.27 deleterious(0.02) possibly_damaging(0.735) TCGA-56-8629-01 12 30818688 30818688 C A IPO8 Missense_Mutation p.G438V 0.30 deleterious(0) probably_damaging(0.999) TCGA-56-8629-01 12 347155 347155 T A SLC6A13 Missense_Mutation p.K167M 0.21 deleterious(0.02) possibly_damaging(0.823) TCGA-56-8629-01 12 51092969 51092970 - A DIP2B Frame_Shift_Ins p.N772Kfs*4 0.24 TCGA-56-8629-01 12 52826873 52826873 A T KRT75 Missense_Mutation p.L221H 0.17 deleterious(0) probably_damaging(0.992) TCGA-56-8629-01 12 56236197 56236197 A G MMP19 Missense_Mutation p.L38P 0.17 deleterious(0) probably_damaging(1) TCGA-56-8629-01 12 65460502 65460502 G T WIF1 Silent p.R217R 0.27 TCGA-56-8629-01 12 66531904 66531904 C A TMBIM4 Missense_Mutation p.A185S 0.17 tolerated(0.35) benign(0.201) TCGA-56-8629-01 12 78571094 78571094 G T NAV3 Splice_Site p.X1766_splice 0.41 TCGA-56-8629-01 12 8800699 8800699 G A MFAP5 Silent p.P170P 0.30 TCGA-56-8629-01 13 113803437 113803437 C T F10 Missense_Mutation p.T358M 0.10 tolerated(0.15) probably_damaging(0.932) TCGA-56-8629-01 13 84455483 84455483 T C SLITRK1 Missense_Mutation p.T54A 0.63 tolerated(0.18) benign(0.008) TCGA-56-8629-01 14 20248499 20248499 C A OR4M1 Nonsense_Mutation p.Y6* 0.29 TCGA-56-8629-01 14 22434187 22434187 T G TRAV12-3 Missense_Mutation p.D80E 0.41 tolerated(0.81) benign(0.023) TCGA-56-8629-01 14 54417485 54417485 C A BMP4 Missense_Mutation p.Q164H 0.38 deleterious(0.04) possibly_damaging(0.796) TCGA-56-8629-01 14 55625454 55625454 T A DLGAP5 Missense_Mutation p.K553N 0.10 deleterious(0.03) benign(0.41) TCGA-56-8629-01 14 58604793 58604793 G A C14orf37 Silent p.N428N 0.35 TCGA-56-8629-01 14 58605427 58605427 G T C14orf37 Missense_Mutation p.T217N 0.37 deleterious(0) benign(0.018) TCGA-56-8629-01 14 72055442 72055442 C T SIPA1L1 Missense_Mutation p.R285C 0.11 deleterious(0) probably_damaging(0.993) TCGA-56-8629-01 14 76249720 76249720 C G TTLL5 Missense_Mutation p.P945A 0.40 tolerated(0.44) benign(0.024) TCGA-56-8629-01 14 81575053 81575053 A T TSHR Intron 0.33 TCGA-56-8629-01 14 88946375 88946375 C A PTPN21 Missense_Mutation p.R467L 0.31 tolerated(0.17) possibly_damaging(0.719) TCGA-56-8629-01 14 89087637 89087637 G C EML5 Missense_Mutation p.I1674M 0.13 deleterious(0) probably_damaging(0.955) TCGA-56-8629-01 14 95054059 95054059 G T SERPINA5 Missense_Mutation p.Q120H 0.33 tolerated(0.17) possibly_damaging(0.68) TCGA-56-8629-01 15 23811606 23811606 A T MKRN3 Missense_Mutation p.Q226L 0.14 tolerated(0.05) benign(0.008) TCGA-56-8629-01 15 34023782 34023782 C A RYR3 Missense_Mutation p.H2437Q 0.20 possibly_damaging(0.811) TCGA-56-8629-01 15 35085476 35085476 G C ACTC1 Missense_Mutation p.L142V 0.21 deleterious_low_confidence(0) possibly_damaging(0.544) TCGA-56-8629-01 15 41772515 41772515 C G RTF1 Missense_Mutation p.P673R 0.31 deleterious(0) probably_damaging(0.988) TCGA-56-8629-01 15 49034146 49034146 T A CEP152 Missense_Mutation p.E1329D 0.63 deleterious(0) probably_damaging(0.982) TCGA-56-8629-01 15 76634261 76634261 G T ISL2 3'UTR 0.42 TCGA-56-8629-01 15 81218037 81218037 C T KIAA1199 Silent p.Y787Y 0.26 TCGA-56-8629-01 15 84286889 84286889 A T SH3GL3 Silent p.P298P 0.19 TCGA-56-8629-01 16 17228576 17228576 G A XYLT1 Missense_Mutation p.T594I 0.26 tolerated(0.07) possibly_damaging(0.905) TCGA-56-8629-01 16 2150446 2150446 C A PKD1 Silent p.P3173P 0.41 TCGA-56-8629-01 16 33020925 33020925 T C IGHV3OR16-8 Silent p.A111A 0.43 TCGA-56-8629-01 16 55736357 55736357 G A SLC6A2 Intron 0.68 TCGA-56-8629-01 16 69333580 69333580 G T SNTB2 Missense_Mutation p.S478I 0.62 tolerated(0.09) possibly_damaging(0.497) TCGA-56-8629-01 16 85689974 85689974 C T GSE1 Missense_Mutation p.R339W 0.81 deleterious(0.02) unknown(0) TCGA-56-8629-01 16 89590472 89590472 G T SPG7 Missense_Mutation p.L145F 0.75 tolerated(0.07) probably_damaging(0.984) TCGA-56-8629-01 17 10558264 10558264 C T MYH3 Missense_Mutation p.V40M 0.65 deleterious(0.03) probably_damaging(0.998) TCGA-56-8629-01 17 16089913 16089913 C A NCOR1 Missense_Mutation p.R66L 0.58 probably_damaging(0.994) TCGA-56-8629-01 17 18682151 18682151 A C FBXW10 Missense_Mutation p.H900P 0.56 deleterious(0) possibly_damaging(0.836) TCGA-56-8629-01 17 41835912 41835912 G T SOST Silent p.P66P 0.31 TCGA-56-8629-01 17 60040276 60040276 G A MED13 Missense_Mutation p.T1634M 0.16 deleterious(0.01) possibly_damaging(0.513) TCGA-56-8629-01 17 60522270 60522270 C - METTL2A Frame_Shift_Del p.R295Afs*21 0.29 TCGA-56-8629-01 17 7579697 7579697 T A TP53 Intron 0.51 TCGA-56-8629-01 17 76798568 76798568 T A USP36 Missense_Mutation p.R954W 0.49 deleterious(0) probably_damaging(0.997) TCGA-56-8629-01 17 78931527 78931527 G A RPTOR Silent p.V1158V 0.47 TCGA-56-8629-01 17 79163511 79163511 C A AZI1 3'UTR 0.21 TCGA-56-8629-01 18 10691284 10691284 G A PIEZO2 Nonsense_Mutation p.R2317* 0.31 TCGA-56-8629-01 18 28923630 28923630 C T DSG1 Intron 0.67 TCGA-56-8629-01 18 2954537 2954537 C A LPIN2 Nonsense_Mutation p.E85* 0.24 TCGA-56-8629-01 18 43529536 43529536 C G EPG5 Missense_Mutation p.G471R 0.29 deleterious(0) probably_damaging(0.998) TCGA-56-8629-01 19 13414638 13414638 C A CACNA1A Missense_Mutation p.V683L 0.56 probably_damaging(0.94) TCGA-56-8629-01 19 15640538 15640538 G C CYP4F22 Missense_Mutation p.G81R 0.69 deleterious(0.01) probably_damaging(0.968) TCGA-56-8629-01 19 17439151 17439151 G T ANO8 Silent p.A682A 0.67 TCGA-56-8629-01 19 19735117 19735117 G C LPAR2 Missense_Mutation p.T335S 0.25 tolerated(0.9) benign(0.001) TCGA-56-8629-01 19 21720389 21720389 G T ZNF429 Nonsense_Mutation p.E512* 0.29 TCGA-56-8629-01 19 30496299 30496299 A T URI1 Missense_Mutation p.K133N 0.16 deleterious(0.04) possibly_damaging(0.821) TCGA-56-8629-01 19 30935729 30935729 G T ZNF536 Missense_Mutation p.Q420H 0.34 tolerated(0.06) probably_damaging(0.993) TCGA-56-8629-01 19 37130687 37130695 TCATAAAAT - ZNF461 In_Frame_Del p.E184_Y186del 0.31 TCGA-56-8629-01 19 38055597 38055597 C T ZNF571 Missense_Mutation p.R578K 0.09 tolerated(0.08) probably_damaging(0.93) TCGA-56-8629-01 19 40363285 40363285 C G FCGBP Missense_Mutation p.V4929L 0.26 probably_damaging(0.942) TCGA-56-8629-01 19 42728985 42728985 G C ZNF526 Missense_Mutation p.D144H 0.21 deleterious(0) possibly_damaging(0.831) TCGA-56-8629-01 19 43372979 43372979 C A PSG1 Missense_Mutation p.G306V 0.34 deleterious(0) probably_damaging(1) TCGA-56-8629-01 19 43372980 43372980 C A PSG1 Nonsense_Mutation p.G306* 0.35 TCGA-56-8629-01 19 46973411 46973411 G A PNMAL1 Silent p.P294P 0.39 TCGA-56-8629-01 19 47969138 47969138 C G SLC8A2 Missense_Mutation p.V175L 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-56-8629-01 19 49207074 49207074 C G FUT2 Silent p.T287T 0.18 TCGA-56-8629-01 19 51274260 51274260 A G GPR32 Missense_Mutation p.I135V 0.34 deleterious(0.01) probably_damaging(0.964) TCGA-56-8629-01 19 55526424 55526424 C T GP6 Missense_Mutation p.E297K 0.32 tolerated_low_confidence(0.31) benign(0) TCGA-56-8629-01 19 56104586 56104586 C A FIZ1 Missense_Mutation p.A241S 0.20 tolerated(0.72) unknown(0) TCGA-56-8629-01 19 58118456 58118456 C T ZNF530 Silent p.C521C 0.15 TCGA-56-8629-01 19 7590046 7590046 G T MCOLN1 Silent p.T77T 0.61 TCGA-56-8629-01 1 103573663 103573663 C G COL11A1 Missense_Mutation p.L24F 0.26 benign(0.106) TCGA-56-8629-01 1 110740143 110740143 C A SLC6A17 Nonsense_Mutation p.C579* 0.43 TCGA-56-8629-01 1 111825303 111825303 C A CHIAP2 RNA 0.49 TCGA-56-8629-01 1 11333881 11333881 G C UBIAD1 Missense_Mutation p.G98A 0.22 deleterious(0) possibly_damaging(0.549) TCGA-56-8629-01 1 114340434 114340434 T A RSBN1 Missense_Mutation p.R310W 0.25 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-56-8629-01 1 115266523 115266523 C A CSDE1 Missense_Mutation p.M664I 0.41 tolerated(0.08) benign(0.01) TCGA-56-8629-01 1 145594161 145594161 T A POLR3C Silent p.V467V 0.45 TCGA-56-8629-01 1 146397462 146397462 G T NBPF12 Splice_Site p.X93_splice 0.18 TCGA-56-8629-01 1 150935090 150935090 T C SETDB1 Silent p.G1062G 0.41 TCGA-56-8629-01 1 152284556 152284556 A G FLG Missense_Mutation p.S936P 0.05 benign(0.174) TCGA-56-8629-01 1 153431394 153431394 C T S100A7 Silent p.L32L 0.45 TCGA-56-8629-01 1 155208327 155208327 T A GBA Missense_Mutation p.E190V 0.45 tolerated(0.08) benign(0.017) TCGA-56-8629-01 1 157514147 157514147 A C FCRL5 Missense_Mutation p.M250R 0.20 deleterious(0) benign(0.356) TCGA-56-8629-01 1 158390534 158390534 G T OR10K2 Silent p.T41T 0.22 TCGA-56-8629-01 1 167032922 167032922 G C GPA33 Missense_Mutation p.N156K 0.50 deleterious(0.04) probably_damaging(0.966) TCGA-56-8629-01 1 169267950 169267950 T C NME7 Silent p.L164L 0.55 TCGA-56-8629-01 1 171482286 171482286 A G PRRC2C Missense_Mutation p.K87E 0.29 unknown(0) TCGA-56-8629-01 1 174340140 174340140 G C RABGAP1L Missense_Mutation p.G497R 0.22 deleterious(0) probably_damaging(0.991) TCGA-56-8629-01 1 174340141 174340141 G T RABGAP1L Missense_Mutation p.G497V 0.22 deleterious(0) probably_damaging(0.995) TCGA-56-8629-01 1 176681096 176681096 A C PAPPA2 Missense_Mutation p.K1259N 0.32 tolerated(0.5) benign(0.013) TCGA-56-8629-01 1 178514667 178514667 G C C1ORF220 Missense_Mutation p.R18T 0.41 benign(0.402) TCGA-56-8629-01 1 17952454 17952454 C T ARHGEF10L Missense_Mutation p.R441W 0.39 deleterious(0.01) probably_damaging(0.978) TCGA-56-8629-01 1 183914648 183914648 C A COLGALT2 Missense_Mutation p.G396V 0.19 deleterious(0) probably_damaging(0.991) TCGA-56-8629-01 1 190067754 190067755 - A BRINP3 Frame_Shift_Ins p.L565Ffs*18 0.32 TCGA-56-8629-01 1 19495928 19495928 C A UBR4 Splice_Site p.X1247_splice 0.20 TCGA-56-8629-01 1 196744052 196744052 G C CFHR3 Missense_Mutation p.W12C 0.68 deleterious(0) possibly_damaging(0.6) TCGA-56-8629-01 1 203020888 203020888 C G PPFIA4 5'UTR 0.58 TCGA-56-8629-01 1 228494834 228494834 C - OBSCN Frame_Shift_Del p.H5011Tfs*31 0.23 TCGA-56-8629-01 1 247654549 247654549 G T OR2W5 RNA 0.46 TCGA-56-8629-01 1 247695831 247695831 G T OR2C3 5'UTR 0.08 TCGA-56-8629-01 1 248201890 248201890 A C OR2L2 Silent p.A107A 0.28 TCGA-56-8629-01 1 248512762 248512762 G A OR14C36 Missense_Mutation p.G229E 0.29 tolerated(1) benign(0.309) TCGA-56-8629-01 1 26303237 26303237 C A PAFAH2 Missense_Mutation p.V232L 0.53 tolerated(0.09) benign(0.099) TCGA-56-8629-01 1 26355741 26355741 T C EXTL1 Silent p.R279R 0.22 TCGA-56-8629-01 1 62267416 62267416 C A INADL Missense_Mutation p.D508E 0.23 tolerated(0.74) benign(0.008) TCGA-56-8629-01 1 74507420 74507420 G A LRRIQ3 Nonsense_Mutation p.R399* 0.49 TCGA-56-8629-01 1 76199281 76199281 G T ACADM Missense_Mutation p.V123F 0.34 tolerated(0.11) benign(0.019) TCGA-56-8629-01 1 79403604 79403604 A G ELTD1 Silent p.N216N 0.23 TCGA-56-8629-01 1 85648314 85648314 G A SYDE2 Nonsense_Mutation p.Q671* 0.28 TCGA-56-8629-01 20 13269323 13269323 C A ISM1 Missense_Mutation p.N260K 0.20 tolerated(0.78) benign(0.186) TCGA-56-8629-01 20 33874679 33874679 G T FAM83C Missense_Mutation p.L635M 0.11 deleterious_low_confidence(0.03) benign(0.4) TCGA-56-8629-01 20 3578581 3578581 C G ATRN Silent p.T1166T 0.44 TCGA-56-8629-01 20 39704810 39704810 G T TOP1 Splice_Site p.X52_splice 0.39 TCGA-56-8629-01 20 40044233 40044233 T A CHD6 Missense_Mutation p.R2178W 0.17 deleterious(0) probably_damaging(0.999) TCGA-56-8629-01 20 43251498 43251498 C T ADA Missense_Mutation p.R251K 0.46 tolerated(0.38) benign(0.008) TCGA-56-8629-01 20 46265460 46265460 C G NCOA3 Nonsense_Mutation p.S777* 0.20 TCGA-56-8629-01 20 51870046 51870046 C A TSHZ2 Missense_Mutation p.Q17K 0.62 deleterious(0.03) possibly_damaging(0.9) TCGA-56-8629-01 20 57875808 57875808 C A EDN3 5'UTR 0.17 TCGA-56-8629-01 21 19642267 19642267 G C TMPRSS15 3'UTR 0.24 TCGA-56-8629-01 21 30255316 30255316 G A N6AMT1 Missense_Mutation p.A71V 0.19 benign(0.021) TCGA-56-8629-01 21 30343643 30343643 C G LTN1 Missense_Mutation p.V358L 0.38 deleterious(0.01) possibly_damaging(0.714) TCGA-56-8629-01 22 22869896 22869896 G T ZNF280A Missense_Mutation p.S20Y 0.26 deleterious(0.01) possibly_damaging(0.862) TCGA-56-8629-01 22 23213756 23213756 C T IGLV4-3 Silent p.F13F 0.20 TCGA-56-8629-01 22 24515412 24515412 C T CABIN1 Missense_Mutation p.T1460I 0.12 tolerated(0.35) benign(0.005) TCGA-56-8629-01 22 29446407 29446407 G T ZNRF3 Silent p.A746A 0.36 TCGA-56-8629-01 22 29684718 29684718 G T EWSR1 Missense_Mutation p.G312V 0.08 deleterious(0.04) unknown(0) TCGA-56-8629-01 22 47569201 47569201 C T TBC1D22A Silent p.L496L 0.54 TCGA-56-8629-01 2 101622516 101622516 C T RPL31 Missense_Mutation p.P110L 0.36 tolerated(0.05) benign(0.033) TCGA-56-8629-01 2 103300637 103300637 C A SLC9A2 Missense_Mutation p.P423T 0.29 tolerated(0.18) probably_damaging(1) TCGA-56-8629-01 2 108622617 108622617 C T SLC5A7 Missense_Mutation p.A285V 0.34 deleterious(0.04) possibly_damaging(0.838) TCGA-56-8629-01 2 131803644 131803644 A G ARHGEF4 Missense_Mutation p.K652R 0.13 tolerated(0.8) benign(0.027) TCGA-56-8629-01 2 133175439 133175439 G T GPR39 Missense_Mutation p.R275M 0.29 tolerated(0.06) possibly_damaging(0.855) TCGA-56-8629-01 2 133175440 133175440 G T GPR39 Missense_Mutation p.R275S 0.29 tolerated(0.15) benign(0.285) TCGA-56-8629-01 2 144194492 144194492 C A ARHGAP15 Nonsense_Mutation p.S195* 0.57 TCGA-56-8629-01 2 149526810 149526810 G C EPC2 Splice_Site p.X410_splice 0.17 TCGA-56-8629-01 2 158617543 158617543 C T ACVR1 Silent p.G371G 0.34 TCGA-56-8629-01 2 159535096 159535096 C G PKP4 Missense_Mutation p.S1087C 0.21 deleterious(0) probably_damaging(0.927) TCGA-56-8629-01 2 165600379 165600379 T C COBLL1 Silent p.K16K 0.37 TCGA-56-8629-01 2 170417217 170417217 T C FASTKD1 Silent p.E217E 0.33 TCGA-56-8629-01 2 175618370 175618370 G T CHRNA1 Nonsense_Mutation p.C238* 0.27 TCGA-56-8629-01 2 178098960 178098960 C T NFE2L2 Missense_Mutation p.D29N 0.37 deleterious(0) probably_damaging(1) TCGA-56-8629-01 2 179466755 179466755 C T TTN Missense_Mutation p.D18415N 0.18 TCGA-56-8629-01 2 179645963 179645963 G T TTN Silent p.T1136T 0.16 TCGA-56-8629-01 2 179645964 179645964 G T TTN Missense_Mutation p.T1136N 0.16 TCGA-56-8629-01 2 183050714 183050714 T C PDE1A Missense_Mutation p.Y490C 0.34 tolerated(0.19) probably_damaging(0.919) TCGA-56-8629-01 2 184025821 184025821 C G NUP35 Missense_Mutation p.L315V 0.13 tolerated(0.46) benign(0.004) TCGA-56-8629-01 2 198949722 198949722 A T PLCL1 Missense_Mutation p.H494L 0.51 deleterious(0) probably_damaging(0.995) TCGA-56-8629-01 2 200790282 200790282 G C C2orf69 Missense_Mutation p.L277F 0.54 deleterious(0.04) possibly_damaging(0.639) TCGA-56-8629-01 2 21227501 21227501 A T APOB Silent p.T3945T 0.36 TCGA-56-8629-01 2 212587195 212587195 T A ERBB4 Missense_Mutation p.N269I 0.74 deleterious(0) benign(0.125) TCGA-56-8629-01 2 219544426 219544426 C T STK36 Missense_Mutation p.R308C 0.35 deleterious(0.02) benign(0.009) TCGA-56-8629-01 2 219922250 219922250 T C IHH Missense_Mutation p.N161S 0.62 tolerated(1) probably_damaging(0.977) TCGA-56-8629-01 2 223085984 223085984 G T PAX3 Nonsense_Mutation p.Y305* 0.63 TCGA-56-8629-01 2 242756199 242756199 G - NEU4 Frame_Shift_Del p.V118Cfs*218 0.39 TCGA-56-8629-01 2 27426215 27426215 T A SLC5A6 Splice_Site p.X365_splice 0.33 TCGA-56-8629-01 2 29135556 29135556 G C WDR43 Missense_Mutation p.E196Q 0.21 deleterious(0.01) probably_damaging(0.954) TCGA-56-8629-01 2 32740477 32740477 A C BIRC6 Missense_Mutation p.K3663N 0.38 benign(0.008) TCGA-56-8629-01 2 38972109 38972109 C T SRSF7 3'UTR 0.25 TCGA-56-8629-01 2 39964182 39964182 C T THUMPD2 Missense_Mutation p.G402E 0.27 deleterious(0) probably_damaging(1) TCGA-56-8629-01 2 44436415 44436415 G T PPM1B Missense_Mutation p.A305S 0.47 deleterious(0.03) possibly_damaging(0.552) TCGA-56-8629-01 2 48915617 48915617 C A LHCGR Missense_Mutation p.S440I 0.48 deleterious(0.02) possibly_damaging(0.74) TCGA-56-8629-01 2 71192095 71192095 C A ATP6V1B1 Nonsense_Mutation p.Y462* 0.31 TCGA-56-8629-01 2 79350024 79350024 G A REG1A Missense_Mutation p.G127R 0.26 tolerated(0.11) probably_damaging(0.992) TCGA-56-8629-01 2 86733018 86733018 G T CHMP3 Missense_Mutation p.P222H 0.06 deleterious(0.03) possibly_damaging(0.846) TCGA-56-8629-01 2 89100791 89100791 G A ANKRD36BP2 RNA 0.24 TCGA-56-8629-01 2 90108572 90108572 G T IGKV6D-41 Missense_Mutation p.V15F 0.32 tolerated(0.29) benign(0.02) TCGA-56-8629-01 3 107925487 107925487 C T IFT57 Silent p.Q214Q 0.60 TCGA-56-8629-01 3 11596347 11596347 C A ATG7 3'UTR 0.69 TCGA-56-8629-01 3 119133944 119133944 G C ARHGAP31 Missense_Mutation p.Q1056H 0.60 deleterious_low_confidence(0.04) benign(0.429) TCGA-56-8629-01 3 122629008 122629008 C G SEMA5B Silent p.R1200R 0.14 TCGA-56-8629-01 3 133193889 133193889 C G BFSP2 3'UTR 0.17 TCGA-56-8629-01 3 154145339 154145339 C G GPR149 Missense_Mutation p.Q380H 0.51 deleterious(0) possibly_damaging(0.553) TCGA-56-8629-01 3 155206558 155206558 T A PLCH1 Silent p.T798T 0.37 TCGA-56-8629-01 3 164059184 164059184 C T MIR720 RNA 0.65 TCGA-56-8629-01 3 165548040 165548040 A T BCHE Missense_Mutation p.V261E 0.08 deleterious(0.01) possibly_damaging(0.544) TCGA-56-8629-01 3 170723160 170723160 G T SLC2A2 Missense_Mutation p.Q293K 0.45 tolerated(0.07) benign(0.02) TCGA-56-8629-01 3 171320951 171320951 G A PLD1 Missense_Mutation p.P1048S 0.03 deleterious(0) probably_damaging(0.999) TCGA-56-8629-01 3 172016542 172016542 G C FNDC3B Silent p.L342L 0.11 TCGA-56-8629-01 3 184099287 184099287 G A CHRD Missense_Mutation p.R129H 0.43 tolerated(0.16) benign(0.004) TCGA-56-8629-01 3 184429511 184429511 C G MAGEF1 Silent p.S33S 0.06 TCGA-56-8629-01 3 195028048 195028048 T C ACAP2 Missense_Mutation p.N305S 0.36 tolerated(0.75) benign(0.001) TCGA-56-8629-01 3 195452964 195452964 G A MUC20 Missense_Mutation p.G497E 0.15 tolerated(1) unknown(0) TCGA-56-8629-01 3 38753918 38753918 C A SCN10A Missense_Mutation p.V1275L 0.17 tolerated(0.54) benign(0.032) TCGA-56-8629-01 3 43732419 43732419 C G ABHD5 5'UTR 0.27 TCGA-56-8629-01 3 45000666 45000666 A G ZDHHC3 Missense_Mutation p.F88S 0.28 deleterious(0.02) probably_damaging(0.993) TCGA-56-8629-01 3 47129614 47129614 C A SETD2 Nonsense_Mutation p.E1756* 0.32 TCGA-56-8629-01 3 50219808 50219808 G T SEMA3F Silent p.T245T 0.70 TCGA-56-8629-01 4 123171563 123171563 G - KIAA1109 Frame_Shift_Del p.G1920Vfs*12 0.45 TCGA-56-8629-01 4 147560297 147560297 T C POU4F2 Missense_Mutation p.M2T 0.32 deleterious_low_confidence(0) unknown(0) TCGA-56-8629-01 4 156296963 156296963 T A MAP9 Nonsense_Mutation p.K14* 0.65 TCGA-56-8629-01 4 170037434 170037434 C T SH3RF1 Missense_Mutation p.D709N 0.63 deleterious(0.03) probably_damaging(0.959) TCGA-56-8629-01 4 183714639 183714639 T A TENM3 Missense_Mutation p.S2272T 0.67 tolerated(0.09) possibly_damaging(0.483) TCGA-56-8629-01 4 184182119 184182119 C T WWC2 Missense_Mutation p.S448L 0.59 deleterious(0) probably_damaging(0.997) TCGA-56-8629-01 4 47663874 47663874 C A CORIN Splice_Site p.X530_splice 0.47 TCGA-56-8629-01 4 59448 59448 G T ZNF595 Silent p.L43L 0.14 TCGA-56-8629-01 4 70152599 70152599 A C UGT2B28 Missense_Mutation p.K334Q 0.63 deleterious(0.01) possibly_damaging(0.663) TCGA-56-8629-01 4 88535171 88535171 T G DSPP Missense_Mutation p.Y453D 0.61 probably_damaging(0.988) TCGA-56-8629-01 4 88535188 88535188 G T DSPP Missense_Mutation p.K458N 0.61 possibly_damaging(0.647) TCGA-56-8629-01 4 96222896 96222896 G T UNC5C Silent p.L117L 0.26 TCGA-56-8629-01 5 101813420 101813420 A C SLCO6A1 Missense_Mutation p.I254M 0.36 tolerated(0.08) possibly_damaging(0.844) TCGA-56-8629-01 5 134910352 134910352 C A CXCL14 Missense_Mutation p.R77M 0.42 deleterious_low_confidence(0) probably_damaging(0.951) TCGA-56-8629-01 5 13766245 13766245 C - DNAH5 Frame_Shift_Del p.R3314Pfs*24 0.19 TCGA-56-8629-01 5 140517056 140517056 C A PCDHB5 Silent p.A680A 0.57 TCGA-56-8629-01 5 140572893 140572893 C A PCDHB10 Silent p.P256P 0.66 TCGA-56-8629-01 5 140724480 140724480 C G PCDHGA3 Missense_Mutation p.L294V 0.52 deleterious_low_confidence(0.02) probably_damaging(0.927) TCGA-56-8629-01 5 156353318 156353318 C T TIMD4 Missense_Mutation p.D284N 0.49 tolerated(0.28) benign(0.021) TCGA-56-8629-01 5 15928376 15928376 G A FBXL7 Missense_Mutation p.A169T 0.17 tolerated(0.07) probably_damaging(0.978) TCGA-56-8629-01 5 16763655 16763655 C - MYO10 Frame_Shift_Del p.E477Kfs*3 0.33 TCGA-56-8629-01 5 170626753 170626753 C A RANBP17 Missense_Mutation p.N706K 0.30 tolerated(0.24) benign(0.073) TCGA-56-8629-01 5 171366 171366 C T PLEKHG4B Missense_Mutation p.A930V 0.22 deleterious(0) probably_damaging(0.999) TCGA-56-8629-01 5 24535355 24535355 C T CDH10 Missense_Mutation p.R227K 0.19 deleterious(0) probably_damaging(0.959) TCGA-56-8629-01 5 31305293 31305293 G T CDH6 Nonsense_Mutation p.E338* 0.57 TCGA-56-8629-01 5 33751608 33751608 C G ADAMTS12 Missense_Mutation p.V179L 0.21 tolerated(0.81) possibly_damaging(0.478) TCGA-56-8629-01 5 34863115 34863115 C T TTC23L Silent p.V164V 0.16 TCGA-56-8629-01 5 82373256 82373256 G A TMEM167A 5'UTR 0.61 TCGA-56-8629-01 6 108070970 108070970 C T SCML4 Silent p.R68R 0.75 TCGA-56-8629-01 6 132891525 132891525 G T TAAR6 Missense_Mutation p.C22F 0.73 deleterious(0) possibly_damaging(0.809) TCGA-56-8629-01 6 152730709 152730709 T C SYNE1 Silent p.K2122K 0.55 TCGA-56-8629-01 6 153078317 153078317 G C VIP Intron 0.23 TCGA-56-8629-01 6 16326794 16326794 G A ATXN1 Missense_Mutation p.A583V 0.72 deleterious(0) probably_damaging(0.991) TCGA-56-8629-01 6 26189247 26189247 G C HIST1H4D Missense_Mutation p.R20G 0.16 deleterious(0) unknown(0) TCGA-56-8629-01 6 51612870 51612870 C A PKHD1 Missense_Mutation p.V3182L 0.78 tolerated(0.08) benign(0.018) TCGA-56-8629-01 6 56420618 56420618 G - DST Frame_Shift_Del p.T2265Lfs*9 0.45 TCGA-56-8629-01 6 6167829 6167829 G C F13A1 Missense_Mutation p.I590M 0.72 tolerated(0.07) possibly_damaging(0.777) TCGA-56-8629-01 6 88387629 88387629 G C AKIRIN2 Missense_Mutation p.R146G 0.22 deleterious(0) probably_damaging(0.956) TCGA-56-8629-01 7 100282160 100282160 G A GIGYF1 Silent p.C514C 0.30 TCGA-56-8629-01 7 106508580 106508580 G C PIK3CG Missense_Mutation p.D192H 0.29 deleterious(0.01) probably_damaging(0.996) TCGA-56-8629-01 7 107323914 107323914 T G SLC26A4 Silent p.T311T 0.46 TCGA-56-8629-01 7 122338653 122338653 C T RNF133 Missense_Mutation p.R107Q 0.32 deleterious(0) probably_damaging(0.945) TCGA-56-8629-01 7 122635713 122635713 G C TAS2R16 5'UTR 0.28 TCGA-56-8629-01 7 141952191 141952191 C A PRSS58 Splice_Site p.X193_splice 0.23 TCGA-56-8629-01 7 143175832 143175832 G A TAS2R41 Silent p.K289K 0.17 TCGA-56-8629-01 7 149528278 149528278 G T SSPO RNA 0.17 TCGA-56-8629-01 7 2582935 2582935 C A BRAT1 Missense_Mutation p.D276Y 0.34 deleterious(0) benign(0.007) TCGA-56-8629-01 7 36588218 36588218 C A AOAH Missense_Mutation p.G378V 0.57 deleterious(0) probably_damaging(0.956) TCGA-56-8629-01 7 48273721 48273721 C A ABCA13 Silent p.I290I 0.49 TCGA-56-8629-01 7 4917628 4917628 G T RADIL Missense_Mutation p.A48D 0.21 tolerated(0.2) benign(0.01) TCGA-56-8629-01 7 50070881 50070881 A G ZPBP Silent p.Y171Y 0.56 TCGA-56-8629-01 7 6854450 6854450 C G CCZ1B Missense_Mutation p.R242T 0.34 deleterious(0.01) benign(0.284) TCGA-56-8629-01 8 144990861 144990861 C T PLEC Silent p.K4513K 0.44 TCGA-56-8629-01 8 39044533 39044533 G C ADAM32 Missense_Mutation p.E341Q 0.21 tolerated(0.4) possibly_damaging(0.903) TCGA-56-8629-01 9 135144822 135144822 G C SETX Intron 0.50 TCGA-56-8629-01 9 138379031 138379031 G T PPP1R26 Missense_Mutation p.S892I 0.60 deleterious(0) possibly_damaging(0.883) TCGA-56-8629-01 9 139568299 139568299 A G AGPAT2 Missense_Mutation p.C248R 0.18 deleterious(0.03) probably_damaging(0.947) TCGA-56-8629-01 9 73442794 73442794 T A TRPM3 Missense_Mutation p.E314D 0.38 deleterious(0) possibly_damaging(0.758) TCGA-56-8629-01 9 88844500 88844500 T G C9orf153 Missense_Mutation p.T7P 0.36 tolerated(0.05) probably_damaging(0.934) TCGA-56-8629-01 9 95766411 95766411 G T FGD3 Silent p.T224T 0.60 TCGA-56-8629-01 X 123517930 123517930 G C TENM1 Missense_Mutation p.P2284R 0.77 deleterious(0) probably_damaging(0.963) TCGA-56-8629-01 X 134989923 134989923 A C SAGE1 Missense_Mutation p.N361T 0.67 tolerated(0.07) possibly_damaging(0.859) TCGA-56-8629-01 X 1505356 1505356 C A SLC25A6 3'UTR 0.47 TCGA-56-8629-01 X 153171212 153171212 C A AVPR2 Silent p.A84A 0.70 TCGA-56-8629-01 X 31140005 31140005 C A DMD 3'UTR 0.63 TCGA-56-8629-01 X 77529194 77529194 G T CYSLTR1 Missense_Mutation p.T17N 0.77 deleterious(0.01) benign(0.011) TCGA-56-8629-01 X 79279643 79279643 G C TBX22 Silent p.P146P 0.65 TCGA-56-A49D-01 10 106849565 106849565 T A SORCS3 Missense_Mutation p.L354Q 0.49 deleterious(0) probably_damaging(0.969) TCGA-56-A49D-01 10 115485273 115485278 AAACCC - CASP7 In_Frame_Del p.P211_K212del 0.33 TCGA-56-A49D-01 10 115889729 115889729 T C C10orf118 Silent p.A701A 0.53 TCGA-56-A49D-01 10 117885013 117885013 G T GFRA1 Silent p.L163L 0.51 TCGA-56-A49D-01 10 129903404 129903404 T C MKI67 Missense_Mutation p.I2234V 0.55 tolerated(0.23) benign(0.022) TCGA-56-A49D-01 10 16867083 16867083 T C CUBN Splice_Site p.X3589_splice 0.38 TCGA-56-A49D-01 10 28151535 28151535 A G ARMC4 Missense_Mutation p.V876A 0.43 deleterious(0.04) benign(0.253) TCGA-56-A49D-01 10 45798929 45798929 C T OR13A1 Silent p.E314E 0.30 TCGA-56-A49D-01 10 48429057 48429057 G A GDF10 Missense_Mutation p.R277C 0.39 deleterious(0.05) benign(0.28) TCGA-56-A49D-01 10 49450276 49450276 C G FRMPD2 Silent p.V165V 0.34 TCGA-56-A49D-01 10 7318938 7318938 C T SFMBT2 Silent p.L262L 0.20 TCGA-56-A49D-01 10 73970586 73970586 G C ASCC1 Missense_Mutation p.S39C 0.19 tolerated(0.11) possibly_damaging(0.57) TCGA-56-A49D-01 10 89717615 89717615 C T PTEN Nonsense_Mutation p.Q214* 0.40 TCGA-56-A49D-01 10 98923180 98923180 C A SLIT1 Missense_Mutation p.V100L 0.57 tolerated(0.12) benign(0.331) TCGA-56-A49D-01 11 100179141 100179141 G C CNTN5 Missense_Mutation p.E891Q 0.12 tolerated(0.08) probably_damaging(1) TCGA-56-A49D-01 11 103026111 103026111 C T DYNC2H1 Missense_Mutation p.H1209Y 0.20 probably_damaging(0.999) TCGA-56-A49D-01 11 107535903 107535903 G A ELMOD1 Missense_Mutation p.E329K 0.24 tolerated_low_confidence(0.14) possibly_damaging(0.524) TCGA-56-A49D-01 11 108159711 108159711 G A ATM Missense_Mutation p.D1373N 0.19 deleterious(0.01) possibly_damaging(0.898) TCGA-56-A49D-01 11 108164070 108164070 G C ATM Missense_Mutation p.D1548H 0.45 deleterious(0) possibly_damaging(0.738) TCGA-56-A49D-01 11 110035389 110035389 A G ZC3H12C Missense_Mutation p.T527A 0.23 tolerated(0.8) benign(0.001) TCGA-56-A49D-01 11 114453686 114453686 A T NXPE4 Missense_Mutation p.S52T 0.28 tolerated(0.08) benign(0.005) TCGA-56-A49D-01 11 114453687 114453687 C T NXPE4 Silent p.K51K 0.28 TCGA-56-A49D-01 11 117387260 117387260 C A DSCAML1 Missense_Mutation p.D629Y 0.32 deleterious(0) probably_damaging(0.99) TCGA-56-A49D-01 11 121008728 121008728 G A TECTA Silent p.V1180V 0.28 TCGA-56-A49D-01 11 128350135 128350135 G C ETS1 Silent p.L358L 0.20 TCGA-56-A49D-01 11 130275681 130275681 A G ADAMTS8 Silent p.F814F 0.27 TCGA-56-A49D-01 11 22294381 22294381 C A ANO5 Missense_Mutation p.P694H 0.24 deleterious(0) probably_damaging(0.981) TCGA-56-A49D-01 11 22294382 22294382 T A ANO5 Silent p.P694P 0.23 TCGA-56-A49D-01 11 22399086 22399086 G C SLC17A6 Missense_Mutation p.G517R 0.26 deleterious(0.01) possibly_damaging(0.825) TCGA-56-A49D-01 11 22770743 22770743 C G GAS2 Missense_Mutation p.P184R 0.18 tolerated(0.24) possibly_damaging(0.573) TCGA-56-A49D-01 11 32977554 32977554 T C QSER1 Silent p.D1417D 0.30 TCGA-56-A49D-01 11 40137112 40137112 T C LRRC4C Missense_Mutation p.H244R 0.18 tolerated(0.2) benign(0.002) TCGA-56-A49D-01 11 48266713 48266713 T G OR4X2 Missense_Mutation p.F20V 0.34 deleterious(0.01) benign(0.053) TCGA-56-A49D-01 11 49214345 49214345 C A FOLH1 Missense_Mutation p.E171D 0.25 deleterious(0.01) possibly_damaging(0.819) TCGA-56-A49D-01 11 55038298 55038298 T G TRIM48 3'UTR 0.59 TCGA-56-A49D-01 11 55653257 55653257 C T TRIM51 Missense_Mutation p.S118F 0.22 deleterious(0) probably_damaging(0.999) TCGA-56-A49D-01 11 55944823 55944823 C T OR5J2 Missense_Mutation p.H244Y 0.25 deleterious(0.01) probably_damaging(0.995) TCGA-56-A49D-01 11 56057696 56057697 - ATC OR8H1 In_Frame_Ins p.V280_I281insM 0.25 TCGA-56-A49D-01 11 56143460 56143460 G A OR8U1 Missense_Mutation p.D121N 0.18 deleterious(0) benign(0.029) TCGA-56-A49D-01 11 56431388 56431388 C T OR5AR1 Missense_Mutation p.A76V 0.23 tolerated(0.23) benign(0.268) TCGA-56-A49D-01 11 58035227 58035227 A T OR10W1 Missense_Mutation p.L35H 0.23 deleterious(0.02) probably_damaging(0.956) TCGA-56-A49D-01 11 58978758 58978758 G C MPEG1 Silent p.P527P 0.06 TCGA-56-A49D-01 11 60694834 60694834 T C TMEM132A Missense_Mutation p.W87R 0.25 tolerated(0.36) benign(0.014) TCGA-56-A49D-01 11 62747210 62747210 G T SLC22A6 Silent p.P416P 0.24 TCGA-56-A49D-01 11 64024116 64024116 C G PLCB3 Missense_Mutation p.R298G 0.26 tolerated(0.21) probably_damaging(0.993) TCGA-56-A49D-01 11 64444467 64444467 G A NRXN2 Silent p.L399L 0.27 TCGA-56-A49D-01 11 64884292 64884292 C T ZNHIT2 Silent p.P278P 0.29 TCGA-56-A49D-01 11 65273148 65273148 G A MALAT1 RNA 0.28 TCGA-56-A49D-01 11 65623489 65623489 T C CFL1 Silent p.P76P 0.25 TCGA-56-A49D-01 11 65810754 65810754 G A GAL3ST3 Missense_Mutation p.R174C 0.30 deleterious(0.02) probably_damaging(0.989) TCGA-56-A49D-01 11 66109606 66109606 G A BRMS1 Missense_Mutation p.R34W 0.27 deleterious(0.01) possibly_damaging(0.804) TCGA-56-A49D-01 11 71153314 71153314 G A DHCR7 Missense_Mutation p.P136L 0.16 deleterious(0) probably_damaging(1) TCGA-56-A49D-01 11 71821032 71821032 C T LRTOMT 3'UTR 0.22 TCGA-56-A49D-01 11 78516453 78516453 T A TENM4 Missense_Mutation p.N688I 0.31 tolerated(0.08) benign(0.158) TCGA-56-A49D-01 11 93465290 93465290 G C KIAA1731 3'Flank 0.21 TCGA-56-A49D-01 11 94277903 94277903 G A FUT4 Missense_Mutation p.D202N 0.19 tolerated(0.31) benign(0.048) TCGA-56-A49D-01 12 123648624 123648624 T A MPHOSPH9 Missense_Mutation p.Q775H 0.39 deleterious(0.03) benign(0.067) TCGA-56-A49D-01 12 49391785 49391785 C A DDN Missense_Mutation p.G292C 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-56-A49D-01 12 52884720 52884720 G A KRT6A Silent p.Y278Y 0.33 TCGA-56-A49D-01 12 53225222 53225222 G T KRT79 Missense_Mutation p.N222K 0.45 tolerated(0.08) benign(0.37) TCGA-56-A49D-01 12 53776785 53776785 C G SP1 Missense_Mutation p.Q352E 0.37 tolerated(0.21) benign(0.217) TCGA-56-A49D-01 12 53777333 53777333 C A SP1 Silent p.L534L 0.40 TCGA-56-A49D-01 12 73046243 73046243 C G TRHDE Missense_Mutation p.C894W 0.66 deleterious(0) probably_damaging(0.985) TCGA-56-A49D-01 12 94805584 94805584 C A CCDC41 Missense_Mutation p.K71N 0.33 deleterious(0) possibly_damaging(0.628) TCGA-56-A49D-01 13 109779715 109779715 G A MYO16 Missense_Mutation p.V1268I 0.22 tolerated(0.08) benign(0) TCGA-56-A49D-01 13 114535333 114535333 T C GAS6 Missense_Mutation p.Y361C 0.44 deleterious(0.04) probably_damaging(1) TCGA-56-A49D-01 13 24411842 24411842 T G MIPEP Missense_Mutation p.Q464H 0.38 deleterious(0) probably_damaging(0.998) TCGA-56-A49D-01 13 25021249 25021249 C G PARP4 Missense_Mutation p.D1064H 0.09 deleterious(0.04) benign(0.065) TCGA-56-A49D-01 13 39263986 39263986 C A FREM2 Silent p.T835T 0.37 TCGA-56-A49D-01 13 79176636 79176636 G T POU4F1 Silent p.A58A 0.54 TCGA-56-A49D-01 14 101200828 101200828 G A DLK1 Silent p.A249A 0.29 TCGA-56-A49D-01 14 106109777 106109777 G T IGHG2 Silent p.V248V 0.23 TCGA-56-A49D-01 14 23855340 23855340 C T MYH6 Missense_Mutation p.D1654N 0.27 deleterious(0) probably_damaging(0.936) TCGA-56-A49D-01 14 31143171 31143171 T G SCFD1 Silent p.S376S 0.33 TCGA-56-A49D-01 14 45542633 45542633 A T FAM179B Missense_Mutation p.T1678S 0.21 deleterious(0.01) probably_damaging(0.958) TCGA-56-A49D-01 14 50050318 50050318 T C RPS29 Intron 0.17 TCGA-56-A49D-01 14 54417369 54417369 C G BMP4 Missense_Mutation p.R203T 0.28 deleterious(0) probably_damaging(0.995) TCGA-56-A49D-01 14 55468843 55468843 G A WDHD1 Nonsense_Mutation p.Q221* 0.19 TCGA-56-A49D-01 14 59930533 59930533 C T GPR135 Missense_Mutation p.R471Q 0.15 deleterious(0.04) benign(0.047) TCGA-56-A49D-01 14 62567432 62567432 T A SYT16 3'UTR 0.26 TCGA-56-A49D-01 14 64519972 64519972 C G SYNE2 Nonsense_Mutation p.S3114* 0.36 TCGA-56-A49D-01 14 73459987 73459987 G T ZFYVE1 Missense_Mutation p.S356Y 0.18 deleterious(0) probably_damaging(0.977) TCGA-56-A49D-01 14 76173430 76173430 G A TTLL5 Missense_Mutation p.D219N 0.27 deleterious(0.04) benign(0.017) TCGA-56-A49D-01 14 88652094 88652094 C A KCNK10 Missense_Mutation p.D473Y 0.24 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-56-A49D-01 14 94004514 94004514 G A UNC79 Silent p.T257T 0.35 TCGA-56-A49D-01 15 20643913 20643913 C T HERC2P3 RNA 0.16 TCGA-56-A49D-01 15 42143279 42143279 T A SPTBN5 Missense_Mutation p.R3605W 0.39 possibly_damaging(0.569) TCGA-56-A49D-01 15 55651642 55651642 G A CCPG1 Intron 0.29 TCGA-56-A49D-01 15 65255884 65255884 G A SPG21 3'UTR 0.51 TCGA-56-A49D-01 15 77906485 77906485 G A LINGO1 Silent p.N588N 0.28 TCGA-56-A49D-01 16 20702434 20702434 T C ACSM1 Missense_Mutation p.Q26R 0.35 tolerated(0.38) benign(0.002) TCGA-56-A49D-01 16 20851713 20851713 A G AC004381.6 Missense_Mutation p.N517D 0.42 tolerated(0.68) benign(0.021) TCGA-56-A49D-01 16 20981212 20981212 G A DNAH3 Missense_Mutation p.S2787L 0.27 deleterious(0) possibly_damaging(0.869) TCGA-56-A49D-01 16 20981213 20981213 A C DNAH3 Missense_Mutation p.S2787A 0.30 tolerated(0.23) benign(0.074) TCGA-56-A49D-01 16 24135182 24135182 G T PRKCB Missense_Mutation p.K315N 0.32 tolerated(0.18) benign(0.005) TCGA-56-A49D-01 16 31419150 31419150 C T ITGAD Missense_Mutation p.P308S 0.39 tolerated(1) benign(0.003) TCGA-56-A49D-01 16 337985 337985 A T AXIN1 3'UTR 0.40 TCGA-56-A49D-01 16 46918687 46918687 G T GPT2 Missense_Mutation p.W20C 0.39 tolerated(0.2) benign(0.133) TCGA-56-A49D-01 16 58608964 58608964 G A CNOT1 Missense_Mutation p.R592C 0.33 deleterious(0) probably_damaging(1) TCGA-56-A49D-01 16 67691208 67691208 C T RLTPR Missense_Mutation p.S1395F 0.31 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-56-A49D-01 16 71894298 71894298 C A ZNF821 Nonsense_Mutation p.E288* 0.27 TCGA-56-A49D-01 16 75513378 75513378 G C CHST6 Missense_Mutation p.L117V 0.42 tolerated(0.76) benign(0.02) TCGA-56-A49D-01 16 81209245 81209245 C T PKD1L2 Missense_Mutation p.A106T 0.39 tolerated(0.14) possibly_damaging(0.61) TCGA-56-A49D-01 16 81953209 81953209 C G PLCG2 Silent p.L725L 0.33 TCGA-56-A49D-01 16 82891990 82891990 A G CDH13 Silent p.E70E 0.26 TCGA-56-A49D-01 16 88598561 88598561 C T ZFPM1 Silent p.N288N 0.33 TCGA-56-A49D-01 17 10263478 10263478 G A MYH13 Missense_Mutation p.T178I 0.48 deleterious(0.01) benign(0.124) TCGA-56-A49D-01 17 10352101 10352101 C T MYH4 Splice_Site p.X1456_splice 0.25 TCGA-56-A49D-01 17 11984782 11984782 C T MAP2K4 Nonsense_Mutation p.R110* 0.24 TCGA-56-A49D-01 17 16285603 16285603 G C UBB Missense_Mutation p.D128H 0.33 deleterious(0) possibly_damaging(0.883) TCGA-56-A49D-01 17 19651654 19651654 G C ALDH3A1 5'Flank 0.33 TCGA-56-A49D-01 17 33504093 33504093 G T UNC45B Missense_Mutation p.A697S 0.38 deleterious(0.03) possibly_damaging(0.868) TCGA-56-A49D-01 17 35748704 35748704 G A C17orf78 3'UTR 0.38 TCGA-56-A49D-01 17 36734748 36734748 C T SRCIN1 Missense_Mutation p.E107K 0.41 deleterious(0) benign(0.121) TCGA-56-A49D-01 17 41362098 41362098 T C NBR1 3'UTR 0.43 TCGA-56-A49D-01 17 463771 463771 G C VPS53 Silent p.L533L 0.40 TCGA-56-A49D-01 17 72619733 72619733 G C CD300E Missense_Mutation p.L10V 0.09 deleterious(0.01) unknown(0) TCGA-56-A49D-01 17 7324916 7324916 G T SPEM1 Missense_Mutation p.G308W 0.27 deleterious(0.01) possibly_damaging(0.572) TCGA-56-A49D-01 17 73949667 73949667 C A ACOX1 Missense_Mutation p.S270I 0.29 deleterious(0.01) benign(0.252) TCGA-56-A49D-01 17 7578536 7578536 T G TP53 Missense_Mutation p.K132Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-56-A49D-01 17 78360619 78360619 G T RNF213 Missense_Mutation p.E4950D 0.21 benign(0.14) TCGA-56-A49D-01 17 79428401 79428401 G A RP11-1055B8.7 Missense_Mutation p.G2238R 0.37 probably_damaging(0.92) TCGA-56-A49D-01 17 9792851 9792851 T A GLP2R Silent p.L497L 0.25 TCGA-56-A49D-01 18 117201 117201 G T ROCK1P1 RNA 0.47 TCGA-56-A49D-01 18 14799108 14799108 G C ANKRD30B Missense_Mutation p.D680H 0.35 tolerated(0.14) benign(0.013) TCGA-56-A49D-01 18 259238 259238 G C THOC1 Silent p.V154V 0.67 TCGA-56-A49D-01 18 28919941 28919941 G T DSG1 Missense_Mutation p.G547V 0.53 deleterious(0) probably_damaging(1) TCGA-56-A49D-01 18 29617208 29617208 G C RNF125 Missense_Mutation p.K98N 0.61 tolerated(0.13) benign(0.011) TCGA-56-A49D-01 18 54285300 54285300 C G TXNL1 Missense_Mutation p.E143Q 0.21 tolerated(0.06) benign(0.079) TCGA-56-A49D-01 18 64202255 64202255 C T CDH19 Nonsense_Mutation p.W435* 0.54 TCGA-56-A49D-01 18 72344136 72344136 C A ZNF407 Silent p.T387T 0.58 TCGA-56-A49D-01 18 7955168 7955168 C T PTPRM Silent p.T296T 0.45 TCGA-56-A49D-01 19 14274145 14274145 G C LPHN1 Silent p.G161G 0.33 TCGA-56-A49D-01 19 15053150 15053150 C A OR7C2 Missense_Mutation p.L284M 0.33 deleterious_low_confidence(0.04) benign(0.35) TCGA-56-A49D-01 19 15733946 15733946 G T CYP4F8 RNA 0.35 TCGA-56-A49D-01 19 16199925 16199925 G A TPM4 Missense_Mutation p.E212K 0.48 deleterious(0.02) possibly_damaging(0.637) TCGA-56-A49D-01 19 17741480 17741480 G A UNC13A Nonsense_Mutation p.R1170* 0.30 TCGA-56-A49D-01 19 19010734 19010734 T A COPE Missense_Mutation p.Q276L 0.35 deleterious(0) possibly_damaging(0.86) TCGA-56-A49D-01 19 21240333 21240333 G - ZNF430 Frame_Shift_Del p.G407Afs*43 0.14 TCGA-56-A49D-01 19 2834541 2834541 C T ZNF554 Silent p.Y436Y 0.32 TCGA-56-A49D-01 19 30936159 30936159 C A ZNF536 Silent p.R564R 0.24 TCGA-56-A49D-01 19 32845548 32845548 C G ZNF507 Missense_Mutation p.D604E 0.16 deleterious(0.01) probably_damaging(0.964) TCGA-56-A49D-01 19 39090569 39090569 G A MAP4K1 Silent p.L555L 0.27 TCGA-56-A49D-01 19 39423057 39423057 C T MRPS12 Missense_Mutation p.P45L 0.28 tolerated(0.06) benign(0.025) TCGA-56-A49D-01 19 40579978 40579978 T C ZNF780A 3'UTR 0.36 TCGA-56-A49D-01 19 44610942 44610942 G A ZNF224 Missense_Mutation p.G210D 0.24 deleterious(0.03) probably_damaging(0.948) TCGA-56-A49D-01 19 47424557 47424557 T A ARHGAP35 Nonsense_Mutation p.C875* 0.24 TCGA-56-A49D-01 19 51920546 51920546 C A SIGLEC10 Missense_Mutation p.A71S 0.32 tolerated(0.75) benign(0.065) TCGA-56-A49D-01 19 53669379 53669379 C G ZNF665 Missense_Mutation p.G122R 0.24 tolerated(0.06) benign(0.006) TCGA-56-A49D-01 19 53741233 53741233 T C ZNF677 Silent p.L249L 0.22 TCGA-56-A49D-01 19 53770143 53770143 A G VN1R4 Missense_Mutation p.L259S 0.31 tolerated(0.32) benign(0.013) TCGA-56-A49D-01 19 53793186 53793186 C A BIRC8 Missense_Mutation p.V148F 0.11 tolerated(0.09) benign(0.043) TCGA-56-A49D-01 19 53793223 53793223 T A BIRC8 Missense_Mutation p.R135S 0.21 deleterious(0) benign(0.045) TCGA-56-A49D-01 19 53854526 53854526 T A ZNF845 Missense_Mutation p.S200T 0.25 deleterious(0.02) possibly_damaging(0.633) TCGA-56-A49D-01 19 54212027 54212027 A G MIR518C RNA 0.29 TCGA-56-A49D-01 19 54228765 54228765 G T MIR516B2 RNA 0.23 TCGA-56-A49D-01 19 54746116 54746116 G C LILRA6 Missense_Mutation p.I47M 0.12 deleterious(0.02) probably_damaging(0.992) TCGA-56-A49D-01 19 54782874 54782874 C A LILRB2 Missense_Mutation p.G250C 0.25 deleterious(0.02) probably_damaging(1) TCGA-56-A49D-01 19 54818619 54818619 G T LILRA5 3'UTR 0.29 TCGA-56-A49D-01 19 56467460 56467460 G T NLRP8 Missense_Mutation p.G679V 0.22 tolerated(0.4) benign(0.065) TCGA-56-A49D-01 19 56572950 56572950 T C NLRP5 3'UTR 0.31 TCGA-56-A49D-01 19 57286057 57286057 C G ZIM2 Nonstop_Mutation p.*528Sext*21 0.29 TCGA-56-A49D-01 19 57867621 57867621 C T ZNF304 Silent p.F128F 0.27 TCGA-56-A49D-01 19 6679181 6679181 G T C3 Missense_Mutation p.L1529M 0.41 tolerated(0.16) benign(0.009) TCGA-56-A49D-01 19 7811358 7811358 G TGGCCACCAGGAC CD209 In_Frame_Ins p.L56delinsVLVAI 0.16 TCGA-56-A49D-01 19 7830087 7830087 C T CLEC4M Silent p.G49G 0.07 TCGA-56-A49D-01 19 7830088 7830088 G C CLEC4M Missense_Mutation p.A50P 0.08 tolerated(1) benign(0) TCGA-56-A49D-01 19 7830116 7830116 T C CLEC4M Missense_Mutation p.M59T 0.11 tolerated(0.64) benign(0) TCGA-56-A49D-01 19 9922057 9922057 C T FBXL12 Missense_Mutation p.D166N 0.33 tolerated(0.28) benign(0.279) TCGA-56-A49D-01 1 100155502 100155502 C T PALMD Intron 0.27 TCGA-56-A49D-01 1 12071581 12071581 C T MFN2 Missense_Mutation p.L745F 0.38 deleterious(0.03) probably_damaging(0.998) TCGA-56-A49D-01 1 153656277 153656277 G A NPR1 Silent p.L487L 0.39 TCGA-56-A49D-01 1 153982468 153982468 G C NUP210L Nonsense_Mutation p.S1637* 0.27 TCGA-56-A49D-01 1 158390125 158390125 A T OR10K2 Missense_Mutation p.F178I 0.35 deleterious(0) probably_damaging(0.999) TCGA-56-A49D-01 1 159923409 159923409 G A SLAMF9 Silent p.S27S 0.38 TCGA-56-A49D-01 1 16059003 16059003 G T PLEKHM2 Silent p.P928P 0.41 TCGA-56-A49D-01 1 160970083 160970083 C G F11R Silent p.R148R 0.17 TCGA-56-A49D-01 1 17395622 17395622 G T PADI2 Missense_Mutation p.H639N 0.25 deleterious(0) probably_damaging(1) TCGA-56-A49D-01 1 183515108 183515108 A G SMG7 Missense_Mutation p.Q747R 0.22 deleterious_low_confidence(0) benign(0.333) TCGA-56-A49D-01 1 20141134 20141134 C T RNF186 Missense_Mutation p.R154H 0.26 deleterious(0.02) benign(0.09) TCGA-56-A49D-01 1 216061878 216061878 G C USH2A Missense_Mutation p.L2705V 0.31 benign(0.033) TCGA-56-A49D-01 1 223177194 223177194 G A DISP1 Missense_Mutation p.A819T 0.32 tolerated(0.18) benign(0.009) TCGA-56-A49D-01 1 237947079 237947079 C T RYR2 Silent p.L4023L 0.30 TCGA-56-A49D-01 1 24495995 24495995 G C IFNLR1 Nonsense_Mutation p.Y93* 0.22 TCGA-56-A49D-01 1 26769306 26769306 G A DHDDS Missense_Mutation p.E89K 0.24 deleterious(0) probably_damaging(1) TCGA-56-A49D-01 1 29063637 29063637 C T YTHDF2 Missense_Mutation p.S2L 0.21 deleterious_low_confidence(0) benign(0.304) TCGA-56-A49D-01 1 34090149 34090149 C A CSMD2 Missense_Mutation p.K1825N 0.23 deleterious(0) possibly_damaging(0.845) TCGA-56-A49D-01 1 35919291 35919291 C T KIAA0319L Splice_Site p.X594_splice 0.34 TCGA-56-A49D-01 1 38040360 38040360 G A GNL2 Missense_Mutation p.P403L 0.30 deleterious(0.01) possibly_damaging(0.783) TCGA-56-A49D-01 1 38433760 38433760 G A SF3A3 Missense_Mutation p.T443I 0.24 deleterious(0) probably_damaging(1) TCGA-56-A49D-01 1 40769240 40769240 G A COL9A2 Nonsense_Mutation p.R504* 0.23 TCGA-56-A49D-01 1 45243579 45243579 G A RPS8 Intron 0.30 TCGA-56-A49D-01 1 51753889 51753889 G C TTC39A Silent p.L562L 0.24 TCGA-56-A49D-01 1 54405738 54405738 G C HSPB11 Silent p.L6L 0.22 TCGA-56-A49D-01 1 70505475 70505475 G A LRRC7 Missense_Mutation p.R1285K 0.25 tolerated(0.69) probably_damaging(0.977) TCGA-56-A49D-01 1 71538207 71538207 C G ZRANB2 Missense_Mutation p.R109T 0.25 deleterious(0) probably_damaging(0.978) TCGA-56-A49D-01 1 74507120 74507120 C A LRRIQ3 Nonsense_Mutation p.E499* 0.14 TCGA-56-A49D-01 1 74507267 74507267 G T LRRIQ3 Silent p.R450R 0.21 TCGA-56-A49D-01 1 74701816 74701816 A G FPGT-TNNI3K Missense_Mutation p.Y138C 0.12 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-56-A49D-01 1 78187543 78187543 C G USP33 Missense_Mutation p.A575P 0.18 deleterious(0.01) probably_damaging(0.994) TCGA-56-A49D-01 1 79002335 79002335 C G PTGFR Missense_Mutation p.S348C 0.39 deleterious(0.02) possibly_damaging(0.907) TCGA-56-A49D-01 1 9078322 9078322 T A SLC2A7 Silent p.A183A 0.29 TCGA-56-A49D-01 20 17594667 17594667 C G RRBP1 3'UTR 0.26 TCGA-56-A49D-01 20 23065331 23065331 G T CD93 Missense_Mutation p.A500D 0.25 tolerated(0.26) benign(0.05) TCGA-56-A49D-01 20 26084204 26084204 T C NCOR1P1 RNA 0.22 TCGA-56-A49D-01 20 29993922 29993922 G C DEFB121 Missense_Mutation p.L12V 0.07 tolerated(0.18) unknown(0) TCGA-56-A49D-01 20 30371583 30371583 G A TPX2 Silent p.V424V 0.13 TCGA-56-A49D-01 20 31671632 31671632 G T BPIFB4 Missense_Mutation p.G210V 0.15 tolerated(0.06) probably_damaging(1) TCGA-56-A49D-01 20 3766939 3766939 G A CENPB Silent p.T64T 0.39 TCGA-56-A49D-01 20 44166605 44166605 T C WFDC6 Missense_Mutation p.K74E 0.30 tolerated(0.28) benign(0.005) TCGA-56-A49D-01 20 5542140 5542140 T C GPCPD1 Missense_Mutation p.I456V 0.22 deleterious(0.03) possibly_damaging(0.899) TCGA-56-A49D-01 21 11098873 11098873 C T BAGE2 RNA 0.18 TCGA-56-A49D-01 21 18981345 18981345 C T BTG3 Missense_Mutation p.E40K 0.39 deleterious(0.03) possibly_damaging(0.621) TCGA-56-A49D-01 21 40601306 40601306 G C BRWD1 Silent p.L1019L 0.27 TCGA-56-A49D-01 22 36960690 36960690 G A CACNG2 Missense_Mutation p.P227L 0.25 deleterious(0) probably_damaging(0.987) TCGA-56-A49D-01 22 38122078 38122078 C T TRIOBP Missense_Mutation p.P1172L 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-56-A49D-01 22 42273407 42273407 G T SREBF2 Missense_Mutation p.V521F 0.15 tolerated(0.08) benign(0.09) TCGA-56-A49D-01 22 44022411 44022411 C A EFCAB6 Missense_Mutation p.S794I 0.37 deleterious(0.01) possibly_damaging(0.489) TCGA-56-A49D-01 22 46762916 46762916 C T CELSR1 Missense_Mutation p.A2727T 0.37 tolerated(0.66) benign(0.014) TCGA-56-A49D-01 2 106739511 106739511 C - UXS1 Frame_Shift_Del p.G225Afs*3 0.20 TCGA-56-A49D-01 2 113496492 113496492 C G CKAP2L Missense_Mutation p.E716Q 0.29 deleterious(0.05) possibly_damaging(0.857) TCGA-56-A49D-01 2 119727904 119727904 T A MARCO Silent p.T138T 0.18 TCGA-56-A49D-01 2 130785942 130785942 C A FAR2P1 RNA 0.16 TCGA-56-A49D-01 2 138376006 138376006 G C THSD7B Missense_Mutation p.G1207R 0.19 deleterious(0) unknown(0) TCGA-56-A49D-01 2 141356327 141356327 A T LRP1B Missense_Mutation p.V2356E 0.20 possibly_damaging(0.727) TCGA-56-A49D-01 2 152521966 152521966 C G NEB Missense_Mutation p.A1707P 0.32 probably_damaging(0.982) TCGA-56-A49D-01 2 158287390 158287390 A C CYTIP Missense_Mutation p.C122G 0.10 tolerated(0.13) benign(0.079) TCGA-56-A49D-01 2 163005627 163005627 C T GCG Missense_Mutation p.R21H 0.28 tolerated(0.54) benign(0.002) TCGA-56-A49D-01 2 168104598 168104598 C A XIRP2 Missense_Mutation p.H2232Q 0.24 benign(0.21) TCGA-56-A49D-01 2 168725952 168725952 C G B3GALT1 Missense_Mutation p.Q135E 0.27 tolerated(0.72) benign(0.004) TCGA-56-A49D-01 2 169952127 169952127 C A DHRS9 Missense_Mutation p.H270Q 0.14 deleterious(0) probably_damaging(0.984) TCGA-56-A49D-01 2 170103355 170103355 G T LRP2 Missense_Mutation p.P1017Q 0.29 benign(0.033) TCGA-56-A49D-01 2 179426007 179426007 G C TTN Missense_Mutation p.I28284M 0.24 TCGA-56-A49D-01 2 179431826 179431826 A C TTN Missense_Mutation p.S26345A 0.20 TCGA-56-A49D-01 2 179455241 179455241 A T TTN Missense_Mutation p.L20404Q 0.32 TCGA-56-A49D-01 2 179476799 179476799 C A TTN Missense_Mutation p.G16780V 0.37 TCGA-56-A49D-01 2 179613699 179613699 T G TTN Intron 0.45 TCGA-56-A49D-01 2 179642222 179642222 C A TTN Missense_Mutation p.D1524Y 0.21 TCGA-56-A49D-01 2 192011443 192011443 G A STAT4 Missense_Mutation p.L57F 0.15 tolerated(1) benign(0.046) TCGA-56-A49D-01 2 192234301 192234301 C T MYO1B Missense_Mutation p.L356F 0.10 deleterious(0) probably_damaging(1) TCGA-56-A49D-01 2 197643619 197643619 C A GTF3C3 Splice_Site p.X464_splice 0.24 TCGA-56-A49D-01 2 197878339 197878339 G A HNRNPA3P15 5'Flank 0.27 TCGA-56-A49D-01 2 198570098 198570098 G A MARS2 5'UTR 0.13 TCGA-56-A49D-01 2 202591946 202591946 G T ALS2 Missense_Mutation p.P990T 0.23 tolerated(0.12) benign(0.178) TCGA-56-A49D-01 2 207174838 207174838 C A ZDBF2 Missense_Mutation p.D1862E 0.15 tolerated(0.07) benign(0.417) TCGA-56-A49D-01 2 207457389 207457389 A T ADAM23 Silent p.P669P 0.15 TCGA-56-A49D-01 2 207530622 207530622 T A DYTN Missense_Mutation p.K371M 0.23 deleterious(0) possibly_damaging(0.907) TCGA-56-A49D-01 2 207631510 207631510 C T FASTKD2 Silent p.F31F 0.12 TCGA-56-A49D-01 2 211502545 211502545 A T CPS1 Missense_Mutation p.N942I 0.25 deleterious(0) possibly_damaging(0.506) TCGA-56-A49D-01 2 220043729 220043729 C T FAM134A Missense_Mutation p.R123C 0.44 deleterious(0) probably_damaging(0.954) TCGA-56-A49D-01 2 238303785 238303785 C T COL6A3 Missense_Mutation p.E52K 0.28 benign(0.011) TCGA-56-A49D-01 2 24021178 24021178 G A ATAD2B Nonsense_Mutation p.R824* 0.20 TCGA-56-A49D-01 2 242077416 242077416 G T PASK Missense_Mutation p.D276E 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-56-A49D-01 2 242196046 242196046 C A HDLBP Missense_Mutation p.R209L 0.34 tolerated(0.09) benign(0.099) TCGA-56-A49D-01 2 29295609 29295609 C T C2orf71 Missense_Mutation p.E507K 0.28 tolerated(0.71) benign(0.015) TCGA-56-A49D-01 2 31595189 31595189 G A XDH Silent p.A587A 0.14 TCGA-56-A49D-01 2 48738598 48738598 G A PPP1R21 Missense_Mutation p.M768I 0.21 tolerated(0.08) benign(0.159) TCGA-56-A49D-01 2 48808250 48808250 G T STON1-GTF2A1L Missense_Mutation p.A160S 0.16 tolerated(0.45) benign(0.257) TCGA-56-A49D-01 2 65248178 65248178 C G SLC1A4 Missense_Mutation p.N499K 0.30 tolerated(0.92) probably_damaging(0.997) TCGA-56-A49D-01 2 71577274 71577274 C T ZNF638 Missense_Mutation p.S397L 0.16 tolerated(0.17) possibly_damaging(0.521) TCGA-56-A49D-01 2 74699812 74699812 C G MRPL53 5'UTR 0.39 TCGA-56-A49D-01 2 97217855 97217855 C T ARID5A Silent p.V530V 0.37 TCGA-56-A49D-01 3 111604004 111604004 G A PHLDB2 Silent p.V360V 0.20 TCGA-56-A49D-01 3 113098281 113098281 C A WDR52 Nonsense_Mutation p.E724* 0.35 TCGA-56-A49D-01 3 127335835 127335835 G - MCM2 Frame_Shift_Del p.A551Rfs*42 0.17 TCGA-56-A49D-01 3 12977077 12977077 C A IQSEC1 Missense_Mutation p.S494I 0.28 deleterious(0) probably_damaging(0.998) TCGA-56-A49D-01 3 145802961 145802961 T C PLOD2 Silent p.Q409Q 0.34 TCGA-56-A49D-01 3 151545504 151545504 A C AADAC Missense_Mutation p.R248S 0.19 deleterious(0) possibly_damaging(0.904) TCGA-56-A49D-01 3 158525240 158525240 G C MFSD1 Missense_Mutation p.R192T 0.18 deleterious(0) probably_damaging(0.969) TCGA-56-A49D-01 3 160141620 160141620 G A SMC4 Missense_Mutation p.E773K 0.22 tolerated(0.38) benign(0.043) TCGA-56-A49D-01 3 160968689 160968689 G A NMD3 Missense_Mutation p.M501I 0.19 deleterious(0.01) benign(0.272) TCGA-56-A49D-01 3 172080471 172080471 G C FNDC3B Missense_Mutation p.Q948H 0.16 tolerated(1) benign(0.001) TCGA-56-A49D-01 3 184910940 184910940 C G EHHADH Missense_Mutation p.D416H 0.32 deleterious(0) probably_damaging(0.999) TCGA-56-A49D-01 3 193176790 193176790 G C ATP13A4 Intron 0.13 TCGA-56-A49D-01 3 29628652 29628652 G T RBMS3 Missense_Mutation p.V119L 0.21 deleterious(0) probably_damaging(0.997) TCGA-56-A49D-01 3 44684600 44684600 A G ZNF197 Missense_Mutation p.I660V 0.24 tolerated(0.2) benign(0.055) TCGA-56-A49D-01 3 47770569 47770569 C G SMARCC1 Missense_Mutation p.E198Q 0.33 deleterious(0.02) benign(0.028) TCGA-56-A49D-01 3 69096713 69096713 A G TMF1 Silent p.N381N 0.48 TCGA-56-A49D-01 3 85932473 85932473 G C CADM2 Missense_Mutation p.A84P 0.11 deleterious(0.04) probably_damaging(0.996) TCGA-56-A49D-01 3 8775590 8775590 G A CAV3 Missense_Mutation p.E10K 0.31 tolerated_low_confidence(0.13) possibly_damaging(0.508) TCGA-56-A49D-01 4 106155337 106155337 C G TET2 Missense_Mutation p.Q80E 0.36 deleterious(0) benign(0.156) TCGA-56-A49D-01 4 115998072 115998072 T G NDST4 Missense_Mutation p.M41L 0.38 tolerated_low_confidence(1) benign(0.001) TCGA-56-A49D-01 4 134075501 134075501 A T PCDH10 Nonsense_Mutation p.R891* 0.27 TCGA-56-A49D-01 4 169931124 169931124 G A CBR4 Silent p.A39A 0.44 TCGA-56-A49D-01 4 68500210 68500210 T C UBA6 Silent p.P623P 0.35 TCGA-56-A49D-01 4 90816650 90816650 T C MMRN1 Silent p.N176N 0.40 TCGA-56-A49D-01 4 90872794 90872794 G T MMRN1 Missense_Mutation p.G1053W 0.21 deleterious(0) probably_damaging(1) TCGA-56-A49D-01 5 137505021 137505021 G - BRD8 Frame_Shift_Del p.R178Gfs*6 0.31 TCGA-56-A49D-01 5 140215582 140215582 C T PCDHA7 Silent p.R538R 0.03 TCGA-56-A49D-01 5 140951494 140951494 C G DIAPH1 Missense_Mutation p.K824N 0.36 possibly_damaging(0.566) TCGA-56-A49D-01 5 147594478 147594478 G A SPINK6 Missense_Mutation p.G70R 0.35 deleterious(0) probably_damaging(1) TCGA-56-A49D-01 5 156671449 156671449 G T ITK Missense_Mutation p.M470I 0.22 deleterious(0) probably_damaging(1) TCGA-56-A49D-01 5 156923929 156923929 C A ADAM19 Nonsense_Mutation p.E523* 0.38 TCGA-56-A49D-01 5 156923930 156923930 C A ADAM19 Missense_Mutation p.Q522H 0.38 tolerated(0.21) benign(0.019) TCGA-56-A49D-01 5 35065232 35065232 C A PRLR Missense_Mutation p.D610Y 0.30 deleterious(0) possibly_damaging(0.855) TCGA-56-A49D-01 5 35709293 35709293 A G SPEF2 Intron 0.37 TCGA-56-A49D-01 5 41186306 41186306 G A C6 Missense_Mutation p.H198Y 0.31 deleterious(0.01) possibly_damaging(0.826) TCGA-56-A49D-01 5 44305205 44305205 C A FGF10 Silent p.G173G 0.28 TCGA-56-A49D-01 5 45645697 45645697 A C HCN1 Missense_Mutation p.L147V 0.29 deleterious(0.01) possibly_damaging(0.654) TCGA-56-A49D-01 5 6372500 6372500 G C MED10 3'UTR 0.36 TCGA-56-A49D-01 5 78415096 78415096 C G BHMT Missense_Mutation p.R61G 0.45 deleterious(0.01) benign(0.288) TCGA-56-A49D-01 5 83356273 83356273 C A EDIL3 Missense_Mutation p.G328V 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-56-A49D-01 5 93077142 93077142 C A POU5F2 Missense_Mutation p.R43M 0.47 tolerated(0.12) possibly_damaging(0.507) TCGA-56-A49D-01 5 98212132 98212132 A C CHD1 Missense_Mutation p.I1123S 0.36 deleterious(0) possibly_damaging(0.521) TCGA-56-A49D-01 6 132874786 132874786 A G TAAR8 Missense_Mutation p.K319E 0.38 deleterious(0.01) benign(0.303) TCGA-56-A49D-01 6 144795778 144795778 G C UTRN Silent p.L1073L 0.36 TCGA-56-A49D-01 6 152737838 152737838 C T SYNE1 Missense_Mutation p.A1912T 0.26 benign(0.11) TCGA-56-A49D-01 6 159677665 159677665 T C FNDC1 Splice_Site p.X1725_splice 0.51 TCGA-56-A49D-01 6 160461713 160461713 C T IGF2R Silent p.D479D 0.35 TCGA-56-A49D-01 6 167708143 167708143 T A UNC93A Missense_Mutation p.C76S 0.12 tolerated(0.12) benign(0.117) TCGA-56-A49D-01 6 167711461 167711461 C T UNC93A Silent p.S176S 0.46 TCGA-56-A49D-01 6 168457910 168457910 G T FRMD1 Missense_Mutation p.T506N 0.33 deleterious(0) probably_damaging(0.949) TCGA-56-A49D-01 6 26285731 26285731 T C HIST1H4H 5'UTR 0.52 TCGA-56-A49D-01 6 31934847 31934847 G A SKIV2L Missense_Mutation p.G803S 0.54 tolerated(0.41) benign(0.016) TCGA-56-A49D-01 6 43414019 43414019 G C ABCC10 Missense_Mutation p.E1127Q 0.49 deleterious(0.03) benign(0.289) TCGA-56-A49D-01 6 43639578 43639578 C T MRPS18A Missense_Mutation p.R171K 0.53 tolerated(1) benign(0) TCGA-56-A49D-01 6 47649198 47649198 C A GPR111 Missense_Mutation p.N301K 0.46 tolerated(0.22) benign(0.108) TCGA-56-A49D-01 6 52546656 52546656 C T TMEM14A Missense_Mutation p.A39V 0.07 deleterious(0.02) probably_damaging(0.975) TCGA-56-A49D-01 6 70034856 70034856 T A BAI3 Silent p.A969A 0.37 TCGA-56-A49D-01 6 90571889 90571889 G A CASP8AP2 RNA 0.50 TCGA-56-A49D-01 7 100210419 100210419 G C MOSPD3 Missense_Mutation p.R2P 0.33 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-56-A49D-01 7 103969589 103969589 C G LHFPL3 Missense_Mutation p.A121G 0.24 tolerated(0.96) benign(0.009) TCGA-56-A49D-01 7 120781030 120781030 C G CPED1 Missense_Mutation p.L617V 0.17 deleterious(0.01) benign(0.002) TCGA-56-A49D-01 7 132659956 132659956 C T CHCHD3 Silent p.E114E 0.30 TCGA-56-A49D-01 7 142148955 142148955 C A TRBV5-5 Missense_Mutation p.A106S 0.17 deleterious(0.02) probably_damaging(0.976) TCGA-56-A49D-01 7 143141433 143141433 G T TAS2R60 Silent p.L296L 0.22 TCGA-56-A49D-01 7 16714047 16714047 G A BZW2 Silent p.E23E 0.26 TCGA-56-A49D-01 7 2473567 2473567 G A CHST12 3'UTR 0.20 TCGA-56-A49D-01 7 30651821 30651821 A G GARS Missense_Mutation p.R331G 0.31 deleterious(0) probably_damaging(1) TCGA-56-A49D-01 7 42957174 42957174 T C PSMA2 Silent p.%3D 0.33 TCGA-56-A49D-01 7 6639488 6639488 T C C7orf26 Silent p.L203L 0.30 TCGA-56-A49D-01 7 72663958 72663958 C A GTF2IRD2P1 RNA 0.23 TCGA-56-A49D-01 7 73249125 73249125 G T WBSCR27 Missense_Mutation p.P229Q 0.21 tolerated_low_confidence(0.38) benign(0.257) TCGA-56-A49D-01 7 7636064 7636064 T C MIOS Silent p.N791N 0.31 TCGA-56-A49D-01 7 86416259 86416259 A C GRM3 Missense_Mutation p.Y384S 0.18 deleterious(0) probably_damaging(0.926) TCGA-56-A49D-01 7 87073039 87073039 G C ABCB4 Missense_Mutation p.I390M 0.18 tolerated(0.07) benign(0.285) TCGA-56-A49D-01 7 90042447 90042447 T C CLDN12 Missense_Mutation p.W153R 0.25 deleterious(0) probably_damaging(0.919) TCGA-56-A49D-01 7 91690671 91690671 G C AKAP9 Missense_Mutation p.R1900P 0.33 benign(0.419) TCGA-56-A49D-01 7 93055777 93055777 G T CALCR Missense_Mutation p.P473Q 0.23 deleterious(0.03) possibly_damaging(0.718) TCGA-56-A49D-01 7 94057132 94057132 G T COL1A2 Missense_Mutation p.G1154V 0.23 unknown(0) TCGA-56-A49D-01 7 99445261 99445261 A C CYP3A43 Intron 0.27 TCGA-56-A49D-01 8 100654168 100654168 G C VPS13B Missense_Mutation p.E1809Q 0.42 tolerated(0.15) probably_damaging(0.932) TCGA-56-A49D-01 8 103309792 103309792 C T UBR5 Missense_Mutation p.G1156E 0.22 tolerated(0.44) benign(0.002) TCGA-56-A49D-01 8 10390526 10390526 G A PRSS55 Missense_Mutation p.G237R 0.07 tolerated(0.09) possibly_damaging(0.693) TCGA-56-A49D-01 8 110432895 110432895 C T PKHD1L1 Silent p.P891P 0.38 TCGA-56-A49D-01 8 131964129 131964129 C A ADCY8 Missense_Mutation p.R409L 0.41 deleterious(0.01) probably_damaging(0.912) TCGA-56-A49D-01 8 139715548 139715548 C A COL22A1 Splice_Site p.X853_splice 0.43 TCGA-56-A49D-01 8 145623011 145623011 G A CPSF1 Silent p.D719D 0.17 TCGA-56-A49D-01 8 35579761 35579761 C A UNC5D Nonsense_Mutation p.S384* 0.24 TCGA-56-A49D-01 8 41552792 41552792 G A ANK1 Silent p.L1047L 0.19 TCGA-56-A49D-01 8 42591856 42591856 C G CHRNB3 3'UTR 0.16 TCGA-56-A49D-01 8 53092770 53092770 G T ST18 Missense_Mutation p.H63Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-56-A49D-01 8 59058978 59058978 G C FAM110B Missense_Mutation p.K63N 0.34 deleterious(0) probably_damaging(0.997) TCGA-56-A49D-01 8 59409324 59409324 C G CYP7A1 Missense_Mutation p.K249N 0.20 deleterious(0.03) benign(0.253) TCGA-56-A49D-01 8 6357292 6357292 G T ANGPT2 3'UTR 0.50 TCGA-56-A49D-01 8 89128920 89128920 G T MMP16 Missense_Mutation p.T300K 0.20 tolerated(0.1) probably_damaging(0.999) TCGA-56-A49D-01 9 101748090 101748090 A G COL15A1 Missense_Mutation p.Q115R 0.41 deleterious(0.04) probably_damaging(0.993) TCGA-56-A49D-01 9 101900262 101900262 G C TGFBR1 Missense_Mutation p.K232N 0.35 deleterious(0) probably_damaging(0.999) TCGA-56-A49D-01 9 140138708 140138708 G A FAM166A Silent p.G260G 0.42 TCGA-56-A49D-01 9 34256102 34256102 C T KIF24 Missense_Mutation p.G1168D 0.29 tolerated(0.19) benign(0.004) TCGA-56-A49D-01 9 35093915 35093915 C A PIGO Missense_Mutation p.Q254H 0.26 deleterious(0) probably_damaging(0.998) TCGA-56-A49D-01 9 36246076 36246076 G A GNE Missense_Mutation p.L221F 0.37 deleterious(0.03) possibly_damaging(0.701) TCGA-56-A49D-01 9 37744734 37744734 T C FRMPD1 Missense_Mutation p.L902S 0.19 deleterious(0) probably_damaging(0.983) TCGA-56-A49D-01 9 86900435 86900435 A G SLC28A3 Missense_Mutation p.M491T 0.52 deleterious(0.03) probably_damaging(0.969) TCGA-56-A49D-01 9 87325556 87325556 C A NTRK2 Missense_Mutation p.L145M 0.36 deleterious(0) probably_damaging(1) TCGA-56-A49D-01 9 88932170 88932170 T C ZCCHC6 Missense_Mutation p.I1080V 0.38 deleterious(0.03) possibly_damaging(0.609) TCGA-56-A49D-01 9 90345959 90345959 G A CTSL Silent p.K313K 0.20 TCGA-56-A49D-01 9 95609578 95609578 T C ZNF484 Missense_Mutation p.I499M 0.32 tolerated(0.1) benign(0.109) TCGA-56-A49D-01 9 97321180 97321180 G A FBP2 3'UTR 0.42 TCGA-56-A49D-01 X 107320511 107320511 A G VSIG1 Missense_Mutation p.Q391R 0.59 deleterious_low_confidence(0) unknown(0) TCGA-56-A49D-01 X 115585593 115585593 C T SLC6A14 Silent p.L463L 0.40 TCGA-56-A49D-01 X 120008833 120008833 G T CT47B1 Missense_Mutation p.A231D 0.55 tolerated(0.17) unknown(0) TCGA-56-A49D-01 X 127185133 127185133 G T ACTRT1 Missense_Mutation p.S351R 0.48 deleterious(0.03) probably_damaging(0.928) TCGA-56-A49D-01 X 140969540 140969540 T A MAGEC3 Nonsense_Mutation p.C289* 0.48 TCGA-56-A49D-01 X 140995663 140995663 C A MAGEC1 Missense_Mutation p.L825I 0.53 tolerated_low_confidence(0.45) unknown(0) TCGA-56-A49D-01 X 147985770 147985770 C A AFF2 Missense_Mutation p.P460H 0.28 tolerated(0.55) possibly_damaging(0.88) TCGA-56-A49D-01 X 150911918 150911918 C A CNGA2 Missense_Mutation p.P315T 0.45 deleterious(0.03) possibly_damaging(0.467) TCGA-56-A49D-01 X 154185340 154185340 C T F8 Silent p.L548L 0.63 TCGA-56-A49D-01 X 1584970 1584970 G T P2RY8 Missense_Mutation p.T161N 0.49 deleterious(0.01) benign(0.444) TCGA-56-A49D-01 X 22291113 22291113 A G ZNF645 Missense_Mutation p.N2S 0.53 tolerated(0.08) possibly_damaging(0.801) TCGA-56-A49D-01 X 63490869 63490869 T A MTMR8 Missense_Mutation p.K522N 0.44 tolerated(0.25) benign(0.029) TCGA-56-A49D-01 X 72667266 72667266 G A CDX4 Missense_Mutation p.M59I 0.36 deleterious(0.04) benign(0.004) TCGA-56-A49D-01 X 88009330 88009330 G T CPXCR1 3'UTR 0.36 TCGA-56-A4BW-01 10 112838036 112838036 C T ADRA2A Silent p.D94D 0.24 TCGA-56-A4BW-01 10 114205119 114205119 T C ZDHHC6 Missense_Mutation p.I26V 0.33 tolerated(0.45) benign(0.001) TCGA-56-A4BW-01 10 117045842 117045842 G T ATRNL1 Missense_Mutation p.A784S 0.28 tolerated(0.07) probably_damaging(0.979) TCGA-56-A4BW-01 10 123258070 123258070 C T FGFR2 Missense_Mutation p.M538I 0.21 deleterious(0) probably_damaging(0.983) TCGA-56-A4BW-01 10 123844456 123844456 T C TACC2 Missense_Mutation p.I814T 0.29 benign(0.004) TCGA-56-A4BW-01 10 129911716 129911716 G A MKI67 Missense_Mutation p.P544L 0.25 deleterious(0) probably_damaging(0.999) TCGA-56-A4BW-01 10 133784164 133784164 G A BNIP3 Missense_Mutation p.H173Y 0.23 deleterious(0) probably_damaging(1) TCGA-56-A4BW-01 10 18964244 18964244 C A ARL5B 3'UTR 0.23 TCGA-56-A4BW-01 10 20568778 20568778 G T PLXDC2 3'UTR 0.50 TCGA-56-A4BW-01 10 27538620 27538620 G T RP11-85G18.6 Intron 0.23 TCGA-56-A4BW-01 10 3150891 3150891 A T PFKP Splice_Site p.X291_splice 0.40 TCGA-56-A4BW-01 10 5791186 5791186 C G FAM208B Silent p.L1934L 0.27 TCGA-56-A4BW-01 10 72192719 72192719 C T NODAL Missense_Mutation p.M339I 0.27 deleterious(0) probably_damaging(0.994) TCGA-56-A4BW-01 10 7621738 7621738 G T ITIH5 Missense_Mutation p.D466E 0.35 deleterious(0) possibly_damaging(0.748) TCGA-56-A4BW-01 10 79784819 79784819 G C POLR3A Missense_Mutation p.L134V 0.25 deleterious(0.03) benign(0.082) TCGA-56-A4BW-01 10 92678927 92678927 A T ANKRD1 Silent p.T102T 0.25 TCGA-56-A4BW-01 11 1016664 1016664 A T MUC6 Missense_Mutation p.V2046D 0.07 probably_damaging(0.938) TCGA-56-A4BW-01 11 6661818 6661818 G C DCHS1 Missense_Mutation p.L343V 0.34 tolerated(1) benign(0.013) TCGA-56-A4BW-01 11 6913591 6913591 G A OR2D2 Silent p.S47S 0.33 TCGA-56-A4BW-01 11 71729255 71729255 C A NUMA1 Nonsense_Mutation p.E318* 0.30 TCGA-56-A4BW-01 12 102174397 102174397 C G GNPTAB Missense_Mutation p.E192Q 0.28 tolerated(0.06) benign(0.057) TCGA-56-A4BW-01 12 110252361 110252361 T G TRPV4 Missense_Mutation p.N81H 0.25 tolerated_low_confidence(0.12) benign(0.02) TCGA-56-A4BW-01 12 111701610 111701610 C A CUX2 Missense_Mutation p.L90M 0.28 deleterious(0) probably_damaging(0.99) TCGA-56-A4BW-01 12 112650346 112650346 G C HECTD4 Missense_Mutation p.P2379R 0.27 probably_damaging(0.991) TCGA-56-A4BW-01 12 117604757 117604757 T C FBXO21 Missense_Mutation p.N380S 0.30 tolerated(1) benign(0.005) TCGA-56-A4BW-01 12 122966153 122966153 G A ZCCHC8 Missense_Mutation p.R312W 0.27 deleterious(0) probably_damaging(0.915) TCGA-56-A4BW-01 12 13529272 13529272 A T C12orf36 Missense_Mutation p.L23Q 0.09 possibly_damaging(0.883) TCGA-56-A4BW-01 12 23687415 23687415 T A SOX5 Missense_Mutation p.Y677F 0.20 tolerated(0.06) possibly_damaging(0.749) TCGA-56-A4BW-01 12 29624904 29624904 T C OVCH1 Missense_Mutation p.I563V 0.50 tolerated(0.2) benign(0.055) TCGA-56-A4BW-01 12 32138526 32138526 A T KIAA1551 Missense_Mutation p.D1546V 0.18 deleterious(0) probably_damaging(0.981) TCGA-56-A4BW-01 12 55524506 55524506 A T OR9K2 Missense_Mutation p.K318N 0.32 deleterious(0.01) benign(0.172) TCGA-56-A4BW-01 12 56232341 56232341 G T MMP19 Intron 0.37 TCGA-56-A4BW-01 12 66703740 66703740 G T HELB Silent p.V344V 0.26 TCGA-56-A4BW-01 12 67699089 67699089 C T CAND1 Silent p.V547V 0.22 TCGA-56-A4BW-01 12 70072610 70072610 C A BEST3 Missense_Mutation p.W182L 0.22 deleterious(0) probably_damaging(0.998) TCGA-56-A4BW-01 12 9360966 9360966 C A PZP 5'UTR 0.29 TCGA-56-A4BW-01 12 96356222 96356222 T A AMDHD1 Silent p.S301S 0.39 TCGA-56-A4BW-01 13 101881930 101881930 G A NALCN Silent p.L480L 0.22 TCGA-56-A4BW-01 13 23908606 23908606 C T SACS Missense_Mutation p.D3137N 0.30 probably_damaging(0.992) TCGA-56-A4BW-01 13 23985423 23985423 C T SACS 5'UTR 0.26 TCGA-56-A4BW-01 13 28197120 28197120 C T POLR1D Silent p.H45H 0.19 TCGA-56-A4BW-01 13 29600296 29600296 G C MTUS2 Silent p.L497L 0.28 TCGA-56-A4BW-01 13 41905466 41905466 G T NAA16 Missense_Mutation p.A290S 0.30 tolerated(0.31) benign(0.296) TCGA-56-A4BW-01 13 46725111 46725111 G T LCP1 Missense_Mutation p.A281E 0.28 deleterious(0) possibly_damaging(0.698) TCGA-56-A4BW-01 13 78218506 78218506 T G SCEL 3'UTR 0.28 TCGA-56-A4BW-01 14 102372917 102372917 G C PPP2R5C Intron 0.22 TCGA-56-A4BW-01 14 20345046 20345046 C T OR4K2 Missense_Mutation p.A207V 0.13 deleterious(0.01) probably_damaging(0.994) TCGA-56-A4BW-01 14 23858826 23858826 G T MYH6 Silent p.R1279R 0.46 TCGA-56-A4BW-01 14 44974503 44974503 G C FSCB Nonsense_Mutation p.S563* 0.16 TCGA-56-A4BW-01 14 47389221 47389221 G C MDGA2 Missense_Mutation p.I744M 0.32 deleterious(0.01) benign(0.231) TCGA-56-A4BW-01 14 70634202 70634202 C A SLC8A3 Missense_Mutation p.R313L 0.22 deleterious(0) probably_damaging(0.96) TCGA-56-A4BW-01 14 71443793 71443793 C T PCNX Missense_Mutation p.H247Y 0.30 tolerated_low_confidence(1) benign(0.017) TCGA-56-A4BW-01 14 72941392 72941392 A G RGS6 Silent p.P226P 0.20 TCGA-56-A4BW-01 14 73637516 73637516 A G PSEN1 Silent p.R33R 0.19 TCGA-56-A4BW-01 14 78399626 78399632 CAACTTA - ADCK1 Frame_Shift_Del p.N489Gfs*12 0.29 TCGA-56-A4BW-01 15 23444036 23444036 G T AC100757.1 5'Flank 0.27 TCGA-56-A4BW-01 15 23811662 23811662 T A MKRN3 Missense_Mutation p.Y245N 0.48 tolerated(0.09) benign(0) TCGA-56-A4BW-01 15 41488021 41488021 G A EXD1 Silent p.C166C 0.25 TCGA-56-A4BW-01 15 52531962 52531962 C A MYO5C Missense_Mutation p.V891F 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-56-A4BW-01 15 52531963 52531963 C A MYO5C Missense_Mutation p.R890S 0.17 deleterious(0) probably_damaging(0.999) TCGA-56-A4BW-01 15 81654580 81654580 C A TMC3 Missense_Mutation p.M125I 0.45 deleterious(0.03) benign(0.212) TCGA-56-A4BW-01 15 89401803 89401803 G A ACAN Missense_Mutation p.G1996E 0.13 deleterious(0.01) probably_damaging(0.917) TCGA-56-A4BW-01 15 89843547 89843549 AGG - FANCI In_Frame_Del p.G941del 0.13 TCGA-56-A4BW-01 16 1262075 1262075 G T CACNA1H Nonsense_Mutation p.E1566* 0.51 TCGA-56-A4BW-01 16 20696525 20696525 G A ACSM1 Silent p.C131C 0.26 TCGA-56-A4BW-01 16 24828143 24828143 G A TNRC6A Missense_Mutation p.R1613H 0.45 tolerated(0.35) possibly_damaging(0.844) TCGA-56-A4BW-01 16 29859188 29859188 G A MVP Missense_Mutation p.E854K 0.41 tolerated(0.52) benign(0.01) TCGA-56-A4BW-01 16 3339554 3339554 G C ZNF263 Missense_Mutation p.E350Q 0.13 tolerated(0.11) possibly_damaging(0.478) TCGA-56-A4BW-01 16 4016231 4016231 C G ADCY9 Missense_Mutation p.E1203Q 0.11 tolerated(0.07) benign(0.085) TCGA-56-A4BW-01 16 461369 461369 C G DECR2 Missense_Mutation p.Q224E 0.21 tolerated(0.95) benign(0.015) TCGA-56-A4BW-01 16 55361262 55361262 C A IRX6 Missense_Mutation p.Q120K 0.21 deleterious(0.01) possibly_damaging(0.684) TCGA-56-A4BW-01 16 57416706 57416706 T A CX3CL1 Missense_Mutation p.M319K 0.21 deleterious(0.05) benign(0.014) TCGA-56-A4BW-01 16 67917837 67917837 G T EDC4 Intron 0.21 TCGA-56-A4BW-01 16 70048061 70048061 C A PDXDC2P RNA 0.23 TCGA-56-A4BW-01 16 70398469 70398469 C G DDX19A Missense_Mutation p.S137C 0.16 deleterious(0) probably_damaging(0.995) TCGA-56-A4BW-01 16 70564698 70564698 G T SF3B3 Missense_Mutation p.A150S 0.21 deleterious(0.04) probably_damaging(0.995) TCGA-56-A4BW-01 16 71509558 71509558 C G ZNF19 Missense_Mutation p.E298Q 0.05 deleterious(0) possibly_damaging(0.646) TCGA-56-A4BW-01 16 84270977 84270977 G A KCNG4 Missense_Mutation p.L39F 0.36 tolerated(0.09) benign(0.426) TCGA-56-A4BW-01 17 10408814 10408814 T C MYH1 Missense_Mutation p.N730S 0.32 deleterious(0) benign(0.422) TCGA-56-A4BW-01 17 10409126 10409126 G C MYH1 Intron 0.23 TCGA-56-A4BW-01 17 11806211 11806211 G T DNAH9 Missense_Mutation p.R3861L 0.32 probably_damaging(1) TCGA-56-A4BW-01 17 17719581 17719581 G C SREBF1 Missense_Mutation p.I748M 0.33 deleterious(0.02) probably_damaging(0.935) TCGA-56-A4BW-01 17 3431355 3431355 A G TRPV3 Silent p.F489F 0.33 TCGA-56-A4BW-01 17 60348815 60348815 C T TBC1D3P2 RNA 0.24 TCGA-56-A4BW-01 17 67003920 67003920 A T ABCA9 Missense_Mutation p.W1139R 0.21 deleterious(0) probably_damaging(0.998) TCGA-56-A4BW-01 17 72363771 72363771 C G GPR142 Missense_Mutation p.Q43E 0.34 deleterious_low_confidence(0) benign(0.217) TCGA-56-A4BW-01 17 7467009 7467009 G C SENP3 Missense_Mutation p.E206Q 0.17 deleterious(0) benign(0.18) TCGA-56-A4BW-01 17 7577609 7577609 C A TP53 Splice_Site p.X225_splice 0.16 TCGA-56-A4BW-01 17 7578461 7578461 C A TP53 Missense_Mutation p.V157F 0.19 deleterious(0) probably_damaging(0.997) TCGA-56-A4BW-01 17 9830036 9830036 C G GAS7 Missense_Mutation p.K312N 0.31 deleterious(0) probably_damaging(0.989) TCGA-56-A4BW-01 18 13056226 13056226 G T CEP192 Missense_Mutation p.G1213C 0.33 deleterious(0.03) benign(0.384) TCGA-56-A4BW-01 18 14791454 14791454 C A ANKRD30B Missense_Mutation p.Q597K 0.21 deleterious(0.01) possibly_damaging(0.879) TCGA-56-A4BW-01 18 70205367 70205367 T A CBLN2 3'UTR 0.35 TCGA-56-A4BW-01 19 10221425 10221425 G A PPAN Missense_Mutation p.E362K 0.28 deleterious(0.04) possibly_damaging(0.501) TCGA-56-A4BW-01 19 1556697 1556697 G A MEX3D Missense_Mutation p.T274I 0.25 tolerated(0.09) probably_damaging(0.981) TCGA-56-A4BW-01 19 19757945 19757945 C T ATP13A1 Missense_Mutation p.R1033H 0.34 deleterious(0.01) probably_damaging(0.996) TCGA-56-A4BW-01 19 19758484 19758484 C T ATP13A1 Missense_Mutation p.G906D 0.19 tolerated(0.2) benign(0.001) TCGA-56-A4BW-01 19 21512134 21512134 G A ZNF708 5'UTR 0.09 TCGA-56-A4BW-01 19 21910344 21910344 C G ZNF100 Missense_Mutation p.G257A 0.21 deleterious(0.03) possibly_damaging(0.734) TCGA-56-A4BW-01 19 34934787 34934787 C G UBA2 Missense_Mutation p.S207C 0.24 deleterious(0) probably_damaging(0.992) TCGA-56-A4BW-01 19 35758764 35758764 C G LSR 3'UTR 0.57 TCGA-56-A4BW-01 19 42265382 42265382 T C CEACAM6 Missense_Mutation p.I217T 0.54 tolerated(1) benign(0.155) TCGA-56-A4BW-01 19 42584835 42584835 G T ZNF574 Missense_Mutation p.G693W 0.50 deleterious(0.03) probably_damaging(0.979) TCGA-56-A4BW-01 19 42584836 42584836 G T ZNF574 Missense_Mutation p.G693V 0.51 tolerated(0.14) probably_damaging(0.972) TCGA-56-A4BW-01 19 44777069 44777069 G A ZNF233 Missense_Mutation p.E86K 0.22 tolerated(0.25) benign(0.043) TCGA-56-A4BW-01 19 45375154 45375154 C T PVRL2 Nonsense_Mutation p.Q175* 0.54 TCGA-56-A4BW-01 19 46195271 46195271 A T SNRPD2 5'UTR 0.06 TCGA-56-A4BW-01 19 50097801 50097801 C T PRR12 Missense_Mutation p.S97F 0.37 benign(0.019) TCGA-56-A4BW-01 19 7755375 7755375 C T FCER2 Missense_Mutation p.G180S 0.24 tolerated(0.23) benign(0.084) TCGA-56-A4BW-01 19 9003691 9003691 C A MUC16 Splice_Site p.X13317_splice 0.24 TCGA-56-A4BW-01 19 9083873 9083873 G T MUC16 Missense_Mutation p.P2648T 0.20 unknown(0) TCGA-56-A4BW-01 1 100602457 100602457 G C TRMT13 Missense_Mutation p.R56T 0.33 deleterious(0) probably_damaging(1) TCGA-56-A4BW-01 1 109428073 109428073 T - GPSM2 5'UTR 0.20 TCGA-56-A4BW-01 1 109792872 109792872 C G CELSR2 Silent p.L57L 0.16 TCGA-56-A4BW-01 1 118550765 118550765 G T SPAG17 Missense_Mutation p.R1497S 0.27 tolerated(0.13) benign(0.048) TCGA-56-A4BW-01 1 149785186 149785186 C T HIST2H3D Silent p.P17P 0.27 TCGA-56-A4BW-01 1 150443475 150443475 G C RPRD2 Missense_Mutation p.G684A 0.18 tolerated_low_confidence(0.18) benign(0.395) TCGA-56-A4BW-01 1 152636901 152636901 G T LCE2D Missense_Mutation p.G107V 0.31 deleterious_low_confidence(0.02) unknown(0) TCGA-56-A4BW-01 1 153598886 153598886 G A S100A13 Silent p.F21F 0.28 TCGA-56-A4BW-01 1 155291978 155291978 C A RUSC1 Silent p.I138I 0.34 TCGA-56-A4BW-01 1 157648528 157648528 G A FCRL3 Missense_Mutation p.P726L 0.26 tolerated_low_confidence(0.3) possibly_damaging(0.763) TCGA-56-A4BW-01 1 158817637 158817637 C A MNDA Silent p.L369L 0.25 TCGA-56-A4BW-01 1 159557739 159557739 G T APCS Missense_Mutation p.V10F 0.29 tolerated(0.08) benign(0.178) TCGA-56-A4BW-01 1 186326528 186326528 C T TPR Splice_Site p.X575_splice 0.29 TCGA-56-A4BW-01 1 192779543 192779543 G A RGS2 Missense_Mutation p.E86K 0.10 tolerated(1) possibly_damaging(0.579) TCGA-56-A4BW-01 1 202092316 202092316 C T GPR37L1 Silent p.G75G 0.18 TCGA-56-A4BW-01 1 202777827 202777827 G C KDM5B 5'UTR 0.16 TCGA-56-A4BW-01 1 216052190 216052190 C A USH2A Missense_Mutation p.G2825V 0.21 benign(0.102) TCGA-56-A4BW-01 1 216052191 216052191 C A USH2A Missense_Mutation p.G2825C 0.20 possibly_damaging(0.684) TCGA-56-A4BW-01 1 217856689 217856689 C G SPATA17 Silent p.T127T 0.26 TCGA-56-A4BW-01 1 224377819 224377819 C T DEGS1 Missense_Mutation p.S208F 0.26 deleterious(0.04) probably_damaging(0.93) TCGA-56-A4BW-01 1 233120313 233120313 G C PCNXL2 Intron 0.28 TCGA-56-A4BW-01 1 237947128 237947128 G C RYR2 Missense_Mutation p.G4039A 0.38 benign(0.053) TCGA-56-A4BW-01 1 246729416 246729416 G A TFB2M Missense_Mutation p.P9S 0.29 tolerated(0.2) benign(0.178) TCGA-56-A4BW-01 1 247614531 247614531 C A OR2B11 Missense_Mutation p.V252F 0.19 deleterious(0) probably_damaging(0.999) TCGA-56-A4BW-01 1 248616177 248616177 C A OR2T2 Missense_Mutation p.L27I 0.15 tolerated(0.26) benign(0.005) TCGA-56-A4BW-01 1 35859252 35859252 G A ZMYM4 Silent p.L941L 0.27 TCGA-56-A4BW-01 1 38078512 38078512 C A RSPO1 Missense_Mutation p.G236V 0.26 tolerated(0.27) benign(0.209) TCGA-56-A4BW-01 1 43215884 43215884 G A LEPRE1 Missense_Mutation p.H565Y 0.22 deleterious(0.01) probably_damaging(0.935) TCGA-56-A4BW-01 1 43773231 43773231 C A TIE1 Missense_Mutation p.Q301K 0.11 tolerated(0.18) probably_damaging(0.966) TCGA-56-A4BW-01 1 44154688 44154689 - GA KDM4A Frame_Shift_Ins p.K655Rfs*19 0.25 TCGA-56-A4BW-01 1 44595522 44595522 C - KLF17 Frame_Shift_Del p.P194Rfs*40 0.22 TCGA-56-A4BW-01 1 45800074 45800074 G C MUTYH Missense_Mutation p.S49C 0.23 deleterious_low_confidence(0.03) benign(0.013) TCGA-56-A4BW-01 1 46654958 46654958 G A POMGNT1 Silent p.S647S 0.26 TCGA-56-A4BW-01 1 59248814 59248814 T A JUN 5'UTR 0.24 TCGA-56-A4BW-01 1 74667008 74667008 G A FPGT-TNNI3K Missense_Mutation p.G99E 0.22 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-56-A4BW-01 1 78098814 78098814 T A ZZZ3 Missense_Mutation p.T76S 0.25 tolerated_low_confidence(0.51) benign(0.001) TCGA-56-A4BW-01 1 78191356 78191356 A G USP33 Silent p.P440P 0.28 TCGA-56-A4BW-01 1 84815453 84815453 C G SAMD13 Nonsense_Mutation p.S116* 0.29 TCGA-56-A4BW-01 20 17462523 17462523 C A PCSK2 Silent p.V575V 0.49 TCGA-56-A4BW-01 20 25456725 25456725 C A NINL Missense_Mutation p.V1068F 0.14 deleterious(0) probably_damaging(0.916) TCGA-56-A4BW-01 20 31877755 31877755 C G BPIFB1 Missense_Mutation p.L108V 0.15 deleterious(0.01) possibly_damaging(0.908) TCGA-56-A4BW-01 20 35742506 35742506 C T MROH8 Missense_Mutation p.A887T 0.22 tolerated(0.08) probably_damaging(0.983) TCGA-56-A4BW-01 20 36676798 36676798 C T RPRD1B Silent p.I110I 0.22 TCGA-56-A4BW-01 20 48472108 48472108 G T SLC9A8 Missense_Mutation p.V251F 0.21 deleterious(0) probably_damaging(0.954) TCGA-56-A4BW-01 20 58587861 58587861 C G CDH26 3'UTR 0.18 TCGA-56-A4BW-01 20 61835008 61835008 C A YTHDF1 Missense_Mutation p.G95V 0.33 deleterious(0) probably_damaging(0.99) TCGA-56-A4BW-01 20 62421678 62421678 C G ZBTB46 Missense_Mutation p.E145Q 0.29 deleterious(0.01) probably_damaging(0.95) TCGA-56-A4BW-01 21 10942718 10942718 G A TPTE Silent p.Y241Y 0.11 TCGA-56-A4BW-01 22 24226001 24226001 G T SLC2A11 Missense_Mutation p.G350C 0.42 deleterious(0) probably_damaging(0.987) TCGA-56-A4BW-01 22 31003172 31003172 C A TCN2 5'UTR 0.16 TCGA-56-A4BW-01 22 40417796 40417797 - C FAM83F Frame_Shift_Ins p.R429Pfs*38 0.21 TCGA-56-A4BW-01 22 42607000 42607000 G A TCF20 Missense_Mutation p.R1438C 0.45 possibly_damaging(0.453) TCGA-56-A4BW-01 22 44495952 44495952 G A PARVB Silent p.T107T 0.44 TCGA-56-A4BW-01 22 50658100 50658100 G A TUBGCP6 Missense_Mutation p.R1430W 0.39 deleterious(0) possibly_damaging(0.862) TCGA-56-A4BW-01 2 103148998 103148998 C T SLC9A4 Silent p.L750L 0.32 TCGA-56-A4BW-01 2 10928822 10928822 C - PDIA6 Splice_Site p.X333_splice 0.31 TCGA-56-A4BW-01 2 109964232 109964232 A T SH3RF3 Nonsense_Mutation p.K226* 0.17 TCGA-56-A4BW-01 2 11742662 11742662 G T GREB1 Missense_Mutation p.G887V 0.38 tolerated(0.22) probably_damaging(1) TCGA-56-A4BW-01 2 118743634 118743634 C A CCDC93 Missense_Mutation p.K177N 0.26 tolerated(0.07) benign(0.005) TCGA-56-A4BW-01 2 125521377 125521377 G T CNTNAP5 Splice_Site p.X787_splice 0.24 TCGA-56-A4BW-01 2 127451467 127451467 C T GYPC Missense_Mutation p.P45L 0.25 deleterious(0.03) benign(0.008) TCGA-56-A4BW-01 2 168115352 168115352 G T XIRP2 3'UTR 0.32 TCGA-56-A4BW-01 2 179455035 179455035 G A TTN Missense_Mutation p.P20473S 0.25 TCGA-56-A4BW-01 2 183731141 183731141 G T FRZB Missense_Mutation p.P47H 0.23 deleterious(0) probably_damaging(0.974) TCGA-56-A4BW-01 2 186673276 186673276 A G FSIP2 Missense_Mutation p.T6504A 0.16 benign(0.013) TCGA-56-A4BW-01 2 189875032 189875032 G C COL3A1 Missense_Mutation p.D1318H 0.27 unknown(0) TCGA-56-A4BW-01 2 198498628 198498628 C A RFTN2 Nonsense_Mutation p.G178* 0.26 TCGA-56-A4BW-01 2 202153345 202153345 A T ALS2CR12 3'UTR 0.25 TCGA-56-A4BW-01 2 205986416 205986416 C G PARD3B Missense_Mutation p.S303C 0.22 tolerated(0.09) benign(0.223) TCGA-56-A4BW-01 2 214727275 214727275 G T SPAG16 Missense_Mutation p.L379F 0.27 tolerated(0.28) benign(0.03) TCGA-56-A4BW-01 2 219248982 219248982 G T SLC11A1 Missense_Mutation p.R56L 0.19 deleterious(0) probably_damaging(0.919) TCGA-56-A4BW-01 2 219248983 219248983 G T SLC11A1 Silent p.R56R 0.18 TCGA-56-A4BW-01 2 220103869 220103869 G C GLB1L Missense_Mutation p.S336C 0.29 deleterious(0) probably_damaging(0.996) TCGA-56-A4BW-01 2 242154243 242154243 C A ANO7 Silent p.I638I 0.14 TCGA-56-A4BW-01 2 242509544 242509544 C T BOK Silent p.I118I 0.12 TCGA-56-A4BW-01 2 26739313 26739313 C A OTOF Missense_Mutation p.R161L 0.15 tolerated(0.42) benign(0.001) TCGA-56-A4BW-01 2 37456117 37456117 T C CEBPZ Silent p.K73K 0.16 TCGA-56-A4BW-01 2 54856343 54856343 G C SPTBN1 Missense_Mutation p.S691T 0.12 tolerated(0.42) benign(0.158) TCGA-56-A4BW-01 2 69092932 69092932 T A BMP10 Missense_Mutation p.H369L 0.45 deleterious(0) probably_damaging(1) TCGA-56-A4BW-01 2 69555423 69555423 G A GFPT1 Nonsense_Mutation p.Q625* 0.22 TCGA-56-A4BW-01 2 69555466 69555466 G T GFPT1 Silent p.I610I 0.24 TCGA-56-A4BW-01 2 74077623 74077623 A T STAMBP Missense_Mutation p.T330S 0.71 deleterious(0.01) possibly_damaging(0.895) TCGA-56-A4BW-01 2 95941228 95941228 G A PROM2 Silent p.L88L 0.31 TCGA-56-A4BW-01 3 108403146 108403146 C - DZIP3 Frame_Shift_Del p.P990Rfs*14 0.31 TCGA-56-A4BW-01 3 112989792 112989792 G T BOC Splice_Site p.X223_splice 0.43 TCGA-56-A4BW-01 3 113795767 113795767 G C QTRTD1 Missense_Mutation p.E254Q 0.23 tolerated(0.06) benign(0.26) TCGA-56-A4BW-01 3 135741848 135741848 G T PPP2R3A Intron 0.18 TCGA-56-A4BW-01 3 150176244 150176244 A G TSC22D2 Missense_Mutation p.R722G 0.16 deleterious(0) benign(0.415) TCGA-56-A4BW-01 3 151538217 151538217 T C AADAC Silent p.L136L 0.28 TCGA-56-A4BW-01 3 159986287 159986287 C T IFT80 Missense_Mutation p.D713N 0.13 deleterious(0) probably_damaging(0.995) TCGA-56-A4BW-01 3 172163134 172163134 G C GHSR Silent p.L306L 0.27 TCGA-56-A4BW-01 3 180325522 180325522 A C TTC14 Missense_Mutation p.D420A 0.14 tolerated(0.09) possibly_damaging(0.784) TCGA-56-A4BW-01 3 182872021 182872021 C G LAMP3 Missense_Mutation p.D70H 0.09 deleterious(0.01) possibly_damaging(0.907) TCGA-56-A4BW-01 3 183824589 183824589 G A HTR3E 3'Flank 0.19 TCGA-56-A4BW-01 3 195794425 195794425 T C TFRC Missense_Mutation p.Q335R 0.19 deleterious(0) probably_damaging(0.985) TCGA-56-A4BW-01 3 3188135 3188135 C A TRNT1 Missense_Mutation p.D210E 0.18 tolerated(1) benign(0) TCGA-56-A4BW-01 3 38592358 38592358 G - SCN5A Frame_Shift_Del p.I1836Sfs*8 0.21 TCGA-56-A4BW-01 3 89498489 89498489 G T EPHA3 Nonsense_Mutation p.G821* 0.38 TCGA-56-A4BW-01 3 97251327 97251327 A T EPHA6 Missense_Mutation p.S776C 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-56-A4BW-01 4 109670603 109670603 C T ETNPPL Missense_Mutation p.G240R 0.15 deleterious(0) probably_damaging(0.986) TCGA-56-A4BW-01 4 121742374 121742374 C G PRDM5 Missense_Mutation p.E143Q 0.22 tolerated(0.06) possibly_damaging(0.488) TCGA-56-A4BW-01 4 129864316 129864316 T C SCLT1 Silent p.Q489Q 0.17 TCGA-56-A4BW-01 4 165890685 165890685 A T TRIM61 Missense_Mutation p.L157Q 0.15 tolerated(0.69) benign(0.001) TCGA-56-A4BW-01 4 169169412 169169412 C A DDX60 Missense_Mutation p.G1297V 0.27 deleterious(0.02) probably_damaging(0.996) TCGA-56-A4BW-01 4 176622738 176622738 T A GPM6A Missense_Mutation p.D73V 0.28 tolerated(0.5) probably_damaging(0.943) TCGA-56-A4BW-01 4 184633838 184633838 G A TRAPPC11 3'UTR 0.28 TCGA-56-A4BW-01 4 3230414 3230414 G A HTT Missense_Mutation p.E2641K 0.21 benign(0.275) TCGA-56-A4BW-01 4 37831692 37831692 G T PGM2 Missense_Mutation p.R63L 0.42 deleterious(0) probably_damaging(0.996) TCGA-56-A4BW-01 4 47593208 47593208 C G ATP10D Missense_Mutation p.A1364G 0.26 tolerated(0.22) benign(0.002) TCGA-56-A4BW-01 4 8217884 8217884 C T SH3TC1 Silent p.F176F 0.41 TCGA-56-A4BW-01 4 87770300 87770300 G C SLC10A6 5'UTR 0.33 TCGA-56-A4BW-01 4 89571038 89571038 G T HERC3 Missense_Mutation p.G92C 0.20 deleterious(0) probably_damaging(1) TCGA-56-A4BW-01 4 89571039 89571039 G T HERC3 Missense_Mutation p.G92V 0.20 deleterious(0) probably_damaging(1) TCGA-56-A4BW-01 4 96761603 96761603 G T PDHA2 Missense_Mutation p.G101V 0.35 deleterious(0) probably_damaging(0.998) TCGA-56-A4BW-01 5 137295426 137295426 C G FAM13B Missense_Mutation p.L440F 0.38 tolerated(0.69) benign(0.183) TCGA-56-A4BW-01 5 13845081 13845081 C A DNAH5 Silent p.L1712L 0.07 TCGA-56-A4BW-01 5 145894963 145894963 A T GPR151 Missense_Mutation p.N238K 0.50 deleterious(0.02) benign(0.134) TCGA-56-A4BW-01 5 150696379 150696379 C T SLC36A2 Silent p.%3D 0.19 TCGA-56-A4BW-01 5 23528002 23528002 C A PRDM9 3'UTR 0.50 TCGA-56-A4BW-01 5 306745 306745 C A PDCD6 Silent p.G79G 0.24 TCGA-56-A4BW-01 5 31541059 31541059 G C C5orf22 Missense_Mutation p.E271Q 0.22 tolerated(0.29) benign(0.08) TCGA-56-A4BW-01 5 32173928 32173928 G C GOLPH3 Silent p.L71L 0.20 TCGA-56-A4BW-01 5 35700666 35700666 T C SPEF2 Missense_Mutation p.L737P 0.47 deleterious(0) probably_damaging(1) TCGA-56-A4BW-01 5 36677151 36677151 A T SLC1A3 Missense_Mutation p.N242I 0.52 deleterious(0) probably_damaging(1) TCGA-56-A4BW-01 5 38530627 38530627 T C LIFR Silent p.Q41Q 0.29 TCGA-56-A4BW-01 5 434131 434131 C G AHRR Missense_Mutation p.L448V 0.51 tolerated(0.67) benign(0.009) TCGA-56-A4BW-01 5 5465065 5465065 G C KIAA0947 Missense_Mutation p.G1873A 0.50 tolerated(0.77) benign(0.068) TCGA-56-A4BW-01 5 7626396 7626396 G C ADCY2 Silent p.S229S 0.11 TCGA-56-A4BW-01 5 7626401 7626401 T G ADCY2 Missense_Mutation p.I231S 0.09 tolerated(0.13) benign(0.051) TCGA-56-A4BW-01 5 79034438 79034438 G T CMYA5 Nonsense_Mutation p.G3284* 0.33 TCGA-56-A4BW-01 6 108224108 108224108 G A SEC63 Silent p.P383P 0.29 TCGA-56-A4BW-01 6 131915439 131915439 T C MED23 Missense_Mutation p.Y1011C 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-56-A4BW-01 6 132791729 132791729 G C STX7 Missense_Mutation p.L142V 0.17 tolerated(0.05) benign(0.138) TCGA-56-A4BW-01 6 132938300 132938300 C G TAAR2 Missense_Mutation p.E349Q 0.29 tolerated_low_confidence(0.71) benign(0.007) TCGA-56-A4BW-01 6 142409417 142409417 C G NMBR Missense_Mutation p.V127L 0.21 deleterious(0) probably_damaging(0.988) TCGA-56-A4BW-01 6 158438279 158438279 C G SYNJ2 Silent p.L57L 0.22 TCGA-56-A4BW-01 6 160668246 160668246 T C SLC22A2 Silent p.K309K 0.28 TCGA-56-A4BW-01 6 161127548 161127548 T C PLG Silent p.C53C 0.24 TCGA-56-A4BW-01 6 4125344 4125344 C G C6orf201 Intron 0.56 TCGA-56-A4BW-01 6 42627396 42627396 C T UBR2 Missense_Mutation p.P1082L 0.23 tolerated(0.15) benign(0.002) TCGA-56-A4BW-01 6 42713795 42713795 C A TBCC Missense_Mutation p.C6F 0.10 tolerated_low_confidence(0.56) benign(0.001) TCGA-56-A4BW-01 6 46135553 46135553 G A ENPP5 Silent p.R149R 0.28 TCGA-56-A4BW-01 6 46977799 46977799 T C GPR110 Missense_Mutation p.I458V 0.17 tolerated(0.91) benign(0.001) TCGA-56-A4BW-01 6 57006848 57006848 G A ZNF451 Missense_Mutation p.C320Y 0.22 deleterious(0) probably_damaging(0.959) TCGA-56-A4BW-01 6 63990661 63990661 C T LGSN Silent p.Q265Q 0.35 TCGA-56-A4BW-01 6 7248918 7248918 A G RREB1 Missense_Mutation p.N1649S 0.50 tolerated(0.38) benign(0.209) TCGA-56-A4BW-01 6 99856077 99856077 C G PNISR Missense_Mutation p.Q248H 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-56-A4BW-01 7 100183613 100183613 G A LRCH4 Silent p.A37A 0.09 TCGA-56-A4BW-01 7 102738855 102738855 A G ARMC10 Missense_Mutation p.H296R 0.36 tolerated(0.38) benign(0.006) TCGA-56-A4BW-01 7 112415337 112415337 C T TMEM168 Missense_Mutation p.V389I 0.31 tolerated(0.31) benign(0.002) TCGA-56-A4BW-01 7 141464537 141464537 A T TAS2R3 Missense_Mutation p.L193F 0.34 tolerated(0.64) benign(0.198) TCGA-56-A4BW-01 7 15433789 15433789 C A AGMO Missense_Mutation p.G209C 0.32 deleterious(0) probably_damaging(1) TCGA-56-A4BW-01 7 20721209 20721209 G T ABCB5 Missense_Mutation p.D597Y 0.25 deleterious(0) probably_damaging(0.944) TCGA-56-A4BW-01 7 31378815 31378815 C G NEUROD6 Missense_Mutation p.R23T 0.36 tolerated(0.19) possibly_damaging(0.587) TCGA-56-A4BW-01 7 34192756 34192756 C G BMPER Missense_Mutation p.I643M 0.25 tolerated(0.08) benign(0.048) TCGA-56-A4BW-01 7 38725653 38725653 A G FAM183B 5'UTR 0.17 TCGA-56-A4BW-01 7 75066907 75066907 C G POM121C Missense_Mutation p.K122N 0.46 deleterious(0.03) probably_damaging(0.98) TCGA-56-A4BW-01 7 83023648 83023648 C A SEMA3E Missense_Mutation p.V489F 0.17 deleterious(0) benign(0.353) TCGA-56-A4BW-01 7 83592570 83592570 G A SEMA3A Missense_Mutation p.A604V 0.12 deleterious(0.02) possibly_damaging(0.71) TCGA-56-A4BW-01 7 8790919 8790919 G T NXPH1 Silent p.T112T 0.36 TCGA-56-A4BW-01 8 110455978 110455978 C A PKHD1L1 Missense_Mutation p.N1546K 0.24 tolerated(0.13) benign(0.118) TCGA-56-A4BW-01 8 114326848 114326848 T C CSMD3 Missense_Mutation p.Y118C 0.26 deleterious(0.04) possibly_damaging(0.796) TCGA-56-A4BW-01 8 114449033 114449033 C T CSMD3 Nonsense_Mutation p.W17* 0.29 TCGA-56-A4BW-01 8 139638433 139638433 T C COL22A1 Silent p.P1239P 0.24 TCGA-56-A4BW-01 8 139793170 139793170 T A COL22A1 Missense_Mutation p.R550S 0.38 unknown(0) TCGA-56-A4BW-01 8 143867093 143867093 C - LY6D Frame_Shift_Del p.R22Afs*33 0.31 TCGA-56-A4BW-01 8 145101596 145101596 G C SPATC1 Silent p.V505V 0.20 TCGA-56-A4BW-01 8 145758545 145758545 C A ARHGAP39 Silent p.L951L 0.28 TCGA-56-A4BW-01 8 1497488 1497488 G T DLGAP2 Missense_Mutation p.R210L 0.42 deleterious(0) possibly_damaging(0.644) TCGA-56-A4BW-01 8 61736460 61736460 T G CHD7 Missense_Mutation p.L1088W 0.25 probably_damaging(0.999) TCGA-56-A4BW-01 8 62289187 62289187 G A CLVS1 Missense_Mutation p.R160H 0.19 deleterious(0.04) possibly_damaging(0.75) TCGA-56-A4BW-01 8 82607153 82607155 CTT - SLC10A5 In_Frame_Del p.E18del 0.23 TCGA-56-A4BW-01 9 117085984 117085984 C T ORM1 Silent p.N52N 0.15 TCGA-56-A4BW-01 9 121929544 121929544 G A BRINP1 Nonsense_Mutation p.R702* 0.25 TCGA-56-A4BW-01 9 134016055 134016055 G C NUP214 Missense_Mutation p.E418Q 0.29 unknown(0) TCGA-56-A4BW-01 9 140051410 140051410 G C GRIN1 Missense_Mutation p.E318Q 0.39 tolerated(0.29) benign(0.101) TCGA-56-A4BW-01 9 33264964 33264964 G T CHMP5 5'UTR 0.46 TCGA-56-A4BW-01 9 79635368 79635368 C G FOXB2 Missense_Mutation p.F266L 0.52 deleterious_low_confidence(0.03) benign(0.056) TCGA-56-A4BW-01 9 97062275 97062275 G C ZNF169 Missense_Mutation p.E145D 0.28 deleterious(0.04) benign(0.004) TCGA-56-A4BW-01 X 107977191 107977191 T C IRS4 Missense_Mutation p.N795S 0.54 tolerated(0.17) unknown(0) TCGA-56-A4BW-01 X 117053670 117053670 T C KLHL13 Silent p.K131K 0.57 TCGA-56-A4BW-01 X 122757917 122757917 T G THOC2 Silent p.L1104L 0.42 TCGA-56-A4BW-01 X 154089997 154089997 G T F8 Missense_Mutation p.P2240H 0.04 deleterious(0) probably_damaging(1) TCGA-56-A4BW-01 X 155119158 155119158 G C VAMP7 Missense_Mutation p.R10T 0.42 deleterious(0) probably_damaging(0.978) TCGA-56-A4BW-01 X 34147979 34147979 A G FAM47A 3'UTR 0.39 TCGA-56-A4BW-01 X 35984846 35984846 G - CXorf22 Frame_Shift_Del p.V527Lfs*2 0.29 TCGA-56-A4BW-01 X 37965900 37965900 G A SYTL5 Missense_Mutation p.V426M 0.44 deleterious(0) probably_damaging(0.97) TCGA-56-A4BW-01 X 38033552 38033552 C A SRPX Missense_Mutation p.R70S 0.57 tolerated(0.3) benign(0.057) TCGA-56-A4BW-01 X 43626758 43626758 A T MAOB Silent p.A506A 0.58 TCGA-56-A4BW-01 X 50350930 50350930 C A SHROOM4 Missense_Mutation p.R1071L 0.09 tolerated(0.06) benign(0.005) TCGA-56-A4BW-01 X 8759329 8759329 C T FAM9A 3'UTR 0.28 TCGA-56-A4BY-01 10 100249924 100249924 G T HPSE2 Silent p.R450R 0.36 TCGA-56-A4BY-01 10 115348882 115348882 A T HABP2 3'UTR 0.67 TCGA-56-A4BY-01 10 43597794 43597794 C A RET Silent p.R114R 0.37 TCGA-56-A4BY-01 11 118498536 118498536 G C PHLDB1 Missense_Mutation p.D333H 0.31 deleterious(0.01) possibly_damaging(0.76) TCGA-56-A4BY-01 11 128839779 128839779 G A ARHGAP32 Nonsense_Mutation p.Q1763* 0.45 TCGA-56-A4BY-01 11 133795676 133795676 G T IGSF9B Silent p.I664I 0.38 TCGA-56-A4BY-01 11 134253887 134253887 G C B3GAT1 Missense_Mutation p.T103R 0.29 deleterious(0) probably_damaging(0.997) TCGA-56-A4BY-01 11 428623 428623 C A ANO9 Missense_Mutation p.G346V 0.24 tolerated(0.05) probably_damaging(1) TCGA-56-A4BY-01 11 46694008 46694008 C T ATG13 3'UTR 0.30 TCGA-56-A4BY-01 11 55038284 55038284 T G TRIM48 3'UTR 0.07 TCGA-56-A4BY-01 11 55136359 55136359 G T OR4A15 Missense_Mutation p.V334L 0.33 tolerated_low_confidence(0.68) benign(0.003) TCGA-56-A4BY-01 11 55418592 55418592 C G OR4S2 Nonsense_Mutation p.Y71* 0.34 TCGA-56-A4BY-01 11 55653314 55653314 G T TRIM51 Missense_Mutation p.R137L 0.22 deleterious(0.01) possibly_damaging(0.701) TCGA-56-A4BY-01 11 55904301 55904301 A G OR8J3 Silent p.N298N 0.29 TCGA-56-A4BY-01 11 55944885 55944885 C T OR5J2 Silent p.S264S 0.30 TCGA-56-A4BY-01 11 57193074 57193074 G A SLC43A3 Missense_Mutation p.T85I 0.24 deleterious(0.03) benign(0.386) TCGA-56-A4BY-01 11 66002812 66002812 C T PACS1 Silent p.N715N 0.31 TCGA-56-A4BY-01 11 77705700 77705700 G C INTS4 5'UTR 0.22 TCGA-56-A4BY-01 11 86123427 86123427 A G CCDC81 Splice_Site p.X407_splice 0.52 TCGA-56-A4BY-01 11 89073335 89073335 C T NOX4 Missense_Mutation p.D448N 0.53 tolerated(0.22) benign(0.013) TCGA-56-A4BY-01 11 89924828 89924828 T A NAALAD2 Silent p.R712R 0.43 TCGA-56-A4BY-01 12 39154690 39154690 T C CPNE8 Silent p.R227R 0.18 TCGA-56-A4BY-01 12 40076535 40076535 G T C12orf40 Missense_Mutation p.W270L 0.20 tolerated(0.08) benign(0.009) TCGA-56-A4BY-01 12 44148289 44148289 C A PUS7L Nonsense_Mutation p.G254* 0.24 TCGA-56-A4BY-01 12 46322364 46322364 G A SCAF11 Missense_Mutation p.R374W 0.31 deleterious(0) probably_damaging(1) TCGA-56-A4BY-01 12 55759233 55759233 G T OR6C75 Silent p.L113L 0.26 TCGA-56-A4BY-01 12 6680116 6680117 - G CHD4 Frame_Shift_Ins p.V1881Sfs*11 0.10 TCGA-56-A4BY-01 12 72771826 72771826 G T TRHDE Missense_Mutation p.A369S 0.32 deleterious(0.02) probably_damaging(1) TCGA-56-A4BY-01 12 89997560 89997560 C T ATP2B1 Missense_Mutation p.R926H 0.08 deleterious(0.02) probably_damaging(0.998) TCGA-56-A4BY-01 13 67205362 67205362 C A PCDH9 Missense_Mutation p.G1107V 0.37 deleterious(0.02) probably_damaging(0.992) TCGA-56-A4BY-01 14 103355911 103355911 G C TRAF3 Missense_Mutation p.L222F 0.17 tolerated(0.15) benign(0.377) TCGA-56-A4BY-01 14 106963117 106963117 C A IGHV1-45 Missense_Mutation p.W55C 0.30 deleterious(0) probably_damaging(0.966) TCGA-56-A4BY-01 14 23396013 23396013 C G PRMT5 Missense_Mutation p.R154P 0.17 deleterious(0.01) benign(0.359) TCGA-56-A4BY-01 14 24642396 24642396 G A REC8 Missense_Mutation p.M110I 0.22 deleterious(0.05) benign(0.113) TCGA-56-A4BY-01 14 68117621 68117621 C T ARG2 Missense_Mutation p.A350V 0.20 deleterious_low_confidence(0.01) benign(0.002) TCGA-56-A4BY-01 14 74196387 74196387 G A ELMSAN1 Missense_Mutation p.P684L 0.13 tolerated(0.08) probably_damaging(0.999) TCGA-56-A4BY-01 14 76429706 76429706 C T TGFB3 Silent p.Q293Q 0.37 TCGA-56-A4BY-01 14 89647086 89647086 C G FOXN3 Silent p.R292R 0.23 TCGA-56-A4BY-01 14 94756405 94756405 C T SERPINA10 Missense_Mutation p.E176K 0.44 tolerated(0.09) benign(0.009) TCGA-56-A4BY-01 15 20876584 20876584 T C NBEAP1 RNA 0.10 TCGA-56-A4BY-01 15 25958829 25958829 C A ATP10A Missense_Mutation p.C779F 0.46 deleterious(0.03) benign(0.057) TCGA-56-A4BY-01 15 29397705 29397705 C T APBA2 Nonsense_Mutation p.Q550* 0.39 TCGA-56-A4BY-01 15 34638159 34638159 G T NUTM1 5'UTR 0.18 TCGA-56-A4BY-01 15 43814355 43814355 C T MAP1A Silent p.G228G 0.33 TCGA-56-A4BY-01 15 54586220 54586220 G A UNC13C Missense_Mutation p.V1316M 0.28 deleterious_low_confidence(0) probably_damaging(0.951) TCGA-56-A4BY-01 15 93557981 93557981 C A CHD2 Missense_Mutation p.A1583D 0.16 tolerated(0.63) benign(0) TCGA-56-A4BY-01 16 2378559 2378559 C A ABCA3 5'UTR 0.58 TCGA-56-A4BY-01 16 2636869 2636869 G T PDPK1 Nonsense_Mutation p.E440* 0.24 TCGA-56-A4BY-01 16 64984798 64984798 G A CDH11 Missense_Mutation p.T589I 0.09 deleterious(0.01) benign(0.004) TCGA-56-A4BY-01 17 27027252 27027252 C G SUPT6H Silent p.A1541A 0.26 TCGA-56-A4BY-01 17 33769207 33769207 G T SLFN13 Missense_Mutation p.P433T 0.19 tolerated(0.12) benign(0.037) TCGA-56-A4BY-01 17 38990969 38990969 C T TMEM99 Silent p.S67S 0.27 TCGA-56-A4BY-01 17 66986002 66986002 T C ABCA9 Missense_Mutation p.R1303G 0.18 deleterious(0.03) benign(0.009) TCGA-56-A4BY-01 17 67094080 67094080 C - ABCA6 Frame_Shift_Del p.G1034Afs*30 0.09 TCGA-56-A4BY-01 17 7577550 7577550 C T TP53 Missense_Mutation p.G244D 0.50 deleterious(0) probably_damaging(1) TCGA-56-A4BY-01 18 13056004 13056004 G T CEP192 Missense_Mutation p.D1139Y 0.16 deleterious(0.01) possibly_damaging(0.861) TCGA-56-A4BY-01 18 50592432 50592432 G T DCC Missense_Mutation p.R386L 0.47 tolerated(0.05) benign(0.23) TCGA-56-A4BY-01 18 59166708 59166708 C A CDH20 Missense_Mutation p.P179H 0.31 tolerated(0.06) possibly_damaging(0.873) TCGA-56-A4BY-01 19 32845614 32845614 C T ZNF507 Silent p.S626S 0.04 TCGA-56-A4BY-01 19 37005889 37005889 T A ZNF260 Missense_Mutation p.K84N 0.50 deleterious(0.03) benign(0.008) TCGA-56-A4BY-01 19 37880722 37880722 T C ZNF527 Missense_Mutation p.F591L 0.11 deleterious(0) probably_damaging(0.999) TCGA-56-A4BY-01 19 38090587 38090587 G C ZNF540 Missense_Mutation p.D24H 0.05 deleterious(0.01) possibly_damaging(0.889) TCGA-56-A4BY-01 19 38572772 38572772 G A SIPA1L3 Silent p.G189G 0.09 TCGA-56-A4BY-01 19 39109888 39109888 T C EIF3K 5'UTR 0.46 TCGA-56-A4BY-01 19 53014905 53014905 A T ZNF578 Missense_Mutation p.E424V 0.08 deleterious(0) possibly_damaging(0.486) TCGA-56-A4BY-01 19 53270938 53270938 T C ZNF600 Missense_Mutation p.Y24C 0.20 tolerated(0.07) benign(0.006) TCGA-56-A4BY-01 19 53957974 53957974 A T ZNF761 RNA 0.11 TCGA-56-A4BY-01 19 55693257 55693257 G C PTPRH Missense_Mutation p.F1071L 0.18 probably_damaging(0.998) TCGA-56-A4BY-01 19 56369575 56369575 G A NLRP4 Silent p.E272E 0.29 TCGA-56-A4BY-01 19 56388373 56388373 G A NLRP4 Missense_Mutation p.C846Y 0.11 deleterious(0) probably_damaging(0.992) TCGA-56-A4BY-01 19 7808025 7808025 G A CD209 Missense_Mutation p.A372V 0.25 tolerated(0.27) benign(0.066) TCGA-56-A4BY-01 19 9063136 9063136 C A MUC16 Missense_Mutation p.G8104C 0.12 unknown(0) TCGA-56-A4BY-01 1 102269990 102269990 G T OLFM3 Missense_Mutation p.A394D 0.28 tolerated(0.05) probably_damaging(0.999) TCGA-56-A4BY-01 1 110051306 110051306 G A AMIGO1 Missense_Mutation p.R77W 0.06 deleterious(0) probably_damaging(0.995) TCGA-56-A4BY-01 1 119427757 119427757 C T TBX15 Silent p.L363L 0.31 TCGA-56-A4BY-01 1 12569076 12569076 T C VPS13D Nonstop_Mutation p.*4389Rext*25 0.21 TCGA-56-A4BY-01 1 145561675 145561675 G A ANKRD35 Missense_Mutation p.D455N 0.43 tolerated(0.23) possibly_damaging(0.811) TCGA-56-A4BY-01 1 152882640 152882640 C T IVL Silent p.L123L 0.17 TCGA-56-A4BY-01 1 153659148 153659148 G T NPR1 Silent p.L595L 0.12 TCGA-56-A4BY-01 1 16260691 16260691 C T SPEN Silent p.S2652S 0.18 TCGA-56-A4BY-01 1 169498868 169498868 C T F5 Missense_Mutation p.M1799I 0.12 tolerated(0.28) benign(0) TCGA-56-A4BY-01 1 171511213 171511213 A G PRRC2C Silent p.P1534P 0.46 TCGA-56-A4BY-01 1 177250035 177250035 T A BRINP2 Missense_Mutation p.C575S 0.18 deleterious(0) probably_damaging(0.991) TCGA-56-A4BY-01 1 177250043 177250043 C A BRINP2 Silent p.T577T 0.13 TCGA-56-A4BY-01 1 197030939 197030939 A T F13B Silent p.S142S 0.31 TCGA-56-A4BY-01 1 200635823 200635823 C A DDX59 Missense_Mutation p.D16Y 0.27 deleterious_low_confidence(0) benign(0.181) TCGA-56-A4BY-01 1 220440141 220440141 T C RAB3GAP2 Intron 0.15 TCGA-56-A4BY-01 1 222898865 222898865 A C BROX Missense_Mutation p.Y183S 0.20 deleterious(0) probably_damaging(1) TCGA-56-A4BY-01 1 233514933 233514933 C T MLK4 Silent p.T727T 0.23 TCGA-56-A4BY-01 1 238048489 238048489 C A ZP4 Silent p.V429V 0.22 TCGA-56-A4BY-01 1 247582036 247582036 G T NLRP3 5'UTR 0.26 TCGA-56-A4BY-01 1 31438992 31438992 T A PUM1 Silent p.A641A 0.31 TCGA-56-A4BY-01 1 47560305 47560305 G A CYP4Z1 Silent p.R280R 0.12 TCGA-56-A4BY-01 1 47685698 47685698 G C TAL1 Silent p.R230R 0.31 TCGA-56-A4BY-01 1 6505771 6505771 C T ESPN Silent p.L414L 0.21 TCGA-56-A4BY-01 1 87045163 87045163 C A CLCA4 Missense_Mutation p.P750H 0.26 tolerated(0.07) possibly_damaging(0.595) TCGA-56-A4BY-01 20 2592939 2592939 C T TMC2 Missense_Mutation p.P566S 0.38 deleterious(0.01) possibly_damaging(0.878) TCGA-56-A4BY-01 20 30253776 30253776 C A BCL2L1 Silent p.L226L 0.43 TCGA-56-A4BY-01 20 49211117 49211117 C G FAM65C Missense_Mutation p.G725R 0.37 tolerated(0.09) benign(0.251) TCGA-56-A4BY-01 21 10910331 10910331 A T TPTE Missense_Mutation p.D475E 0.15 tolerated(0.1) probably_damaging(0.914) TCGA-56-A4BY-01 21 19775842 19775842 G T TMPRSS15 Missense_Mutation p.A33D 0.38 deleterious(0.01) possibly_damaging(0.568) TCGA-56-A4BY-01 21 45821628 45821628 G T TRPM2 Missense_Mutation p.V796L 0.25 tolerated(0.1) benign(0.251) TCGA-56-A4BY-01 21 46117625 46117625 C G KRTAP10-12 Missense_Mutation p.S170C 0.18 deleterious(0.03) unknown(0) TCGA-56-A4BY-01 22 30857597 30857597 G A SEC14L3 Missense_Mutation p.R286C 0.29 deleterious(0.04) possibly_damaging(0.515) TCGA-56-A4BY-01 22 42896638 42896638 G T SERHL RNA 0.30 TCGA-56-A4BY-01 22 44285373 44285373 A G PNPLA5 Missense_Mutation p.C180R 0.28 tolerated(0.46) possibly_damaging(0.642) TCGA-56-A4BY-01 2 121746752 121746752 A T GLI2 Missense_Mutation p.T1088S 0.26 tolerated(1) benign(0.001) TCGA-56-A4BY-01 2 130899927 130899927 C T CCDC74B Missense_Mutation p.R108K 0.38 tolerated(1) benign(0) TCGA-56-A4BY-01 2 152370891 152370891 C T NEB Missense_Mutation p.E7690K 0.28 benign(0.381) TCGA-56-A4BY-01 2 160239236 160239236 G A BAZ2B Missense_Mutation p.P1280L 0.26 benign(0.165) TCGA-56-A4BY-01 2 162274761 162274761 G C TBR1 Missense_Mutation p.W299C 0.27 deleterious(0) probably_damaging(0.999) TCGA-56-A4BY-01 2 166234148 166234148 T G SCN2A Silent p.V1432V 0.24 TCGA-56-A4BY-01 2 171300487 171300487 C T MYO3B Silent p.A887A 0.31 TCGA-56-A4BY-01 2 178098806 178098806 G T NFE2L2 Missense_Mutation p.T80K 0.34 deleterious(0) probably_damaging(1) TCGA-56-A4BY-01 2 191362380 191362380 T C MFSD6 Missense_Mutation p.Y703H 0.29 tolerated_low_confidence(0.2) probably_damaging(0.979) TCGA-56-A4BY-01 2 196718074 196718074 T C DNAH7 Missense_Mutation p.Y2925C 0.38 deleterious(0) probably_damaging(0.964) TCGA-56-A4BY-01 2 197951446 197951446 T C ANKRD44 Missense_Mutation p.Q400R 0.47 deleterious(0) possibly_damaging(0.614) TCGA-56-A4BY-01 2 211476856 211476856 C A CPS1 Missense_Mutation p.R809S 0.43 deleterious(0) probably_damaging(1) TCGA-56-A4BY-01 2 239040050 239040050 G A ESPNL Missense_Mutation p.A899T 0.60 tolerated(0.17) benign(0.1) TCGA-56-A4BY-01 2 24413393 24413393 A T FAM228A Nonsense_Mutation p.K172* 0.19 TCGA-56-A4BY-01 2 46237613 46237613 A G PRKCE Missense_Mutation p.K465R 0.20 tolerated(0.31) benign(0.009) TCGA-56-A4BY-01 2 46739827 46739827 C A ATP6V1E2 Silent p.V8V 0.58 TCGA-56-A4BY-01 2 54131291 54131291 C A PSME4 Silent p.V982V 0.52 TCGA-56-A4BY-01 2 73835658 73835658 C T ALMS1 Missense_Mutation p.S4139L 0.26 benign(0.084) TCGA-56-A4BY-01 2 73994312 73994312 C A DUSP11 Missense_Mutation p.V220L 0.38 tolerated(0.28) benign(0.007) TCGA-56-A4BY-01 2 85596934 85596934 T A ELMOD3 Missense_Mutation p.V114E 0.30 tolerated(0.09) benign(0.164) TCGA-56-A4BY-01 3 126915768 126915780 GGTGCTCTATGGT - C3orf56 Frame_Shift_Del p.V81Gfs*31 0.08 TCGA-56-A4BY-01 3 127335803 127335803 G T MCM2 Missense_Mutation p.V539L 0.19 tolerated(0.06) benign(0.008) TCGA-56-A4BY-01 3 138291769 138291769 T C CEP70 Translation_Start_Site p.M1? 0.19 deleterious_low_confidence(0.01) benign(0.01) TCGA-56-A4BY-01 3 141904561 141904561 A G GK5 Intron 0.70 TCGA-56-A4BY-01 3 164907774 164907774 G T SLITRK3 Missense_Mutation p.P282H 0.56 deleterious(0) probably_damaging(0.962) TCGA-56-A4BY-01 3 178921567 178921567 A G PIK3CA Missense_Mutation p.D350G 0.53 deleterious(0.01) possibly_damaging(0.646) TCGA-56-A4BY-01 3 196555331 196555331 G A PAK2 3'UTR 0.53 TCGA-56-A4BY-01 3 38151644 38151644 G A DLEC1 Silent p.A1105A 0.54 TCGA-56-A4BY-01 3 38671912 38671912 G C SCN5A Missense_Mutation p.I94M 0.44 tolerated(0.33) probably_damaging(0.992) TCGA-56-A4BY-01 3 43389118 43389118 A G SNRK Missense_Mutation p.K456R 0.52 tolerated(0.23) benign(0.002) TCGA-56-A4BY-01 3 52582241 52582241 G A PBRM1 Silent p.R1529R 0.07 TCGA-56-A4BY-01 3 85961650 85961650 C A CADM2 Silent p.L212L 0.44 TCGA-56-A4BY-01 4 138452463 138452463 C A PCDH18 Silent p.P260P 0.29 TCGA-56-A4BY-01 4 141543543 141543543 T C TBC1D9 Missense_Mutation p.T1203A 0.28 tolerated_low_confidence(0.3) benign(0.002) TCGA-56-A4BY-01 4 164069522 164069522 C T NAF1 Missense_Mutation p.G202E 0.26 deleterious(0) probably_damaging(1) TCGA-56-A4BY-01 4 164393665 164393665 C A TKTL2 Missense_Mutation p.A408S 0.41 tolerated(0.07) possibly_damaging(0.794) TCGA-56-A4BY-01 4 187455498 187455498 A C MTNR1A Missense_Mutation p.L133R 0.13 deleterious(0.01) benign(0.217) TCGA-56-A4BY-01 4 62598942 62598942 C T LPHN3 Nonsense_Mutation p.Q289* 0.38 TCGA-56-A4BY-01 4 6925403 6925403 T AC TBC1D14 Frame_Shift_Ins p.I96Nfs*21 0.22 TCGA-56-A4BY-01 5 140502791 140502791 C G PCDHB4 Missense_Mutation p.T404R 0.22 deleterious(0) probably_damaging(0.996) TCGA-56-A4BY-01 5 153056645 153056645 G T GRIA1 Missense_Mutation p.G328V 0.33 tolerated(0.14) probably_damaging(0.967) TCGA-56-A4BY-01 5 33576198 33576198 G C ADAMTS12 Silent p.G1311G 0.51 TCGA-56-A4BY-01 5 38412646 38412646 A G EGFLAM Missense_Mutation p.T464A 0.23 tolerated(0.37) benign(0.012) TCGA-56-A4BY-01 5 45303809 45303809 G T HCN1 Silent p.R504R 0.19 TCGA-56-A4BY-01 5 71492303 71492303 G A MAP1B Missense_Mutation p.A1041T 0.07 probably_damaging(0.989) TCGA-56-A4BY-01 5 80376544 80376544 A G RASGRF2 Missense_Mutation p.Y366C 0.20 tolerated(0.05) probably_damaging(1) TCGA-56-A4BY-01 6 121768797 121768797 C T GJA1 Silent p.F268F 0.24 TCGA-56-A4BY-01 6 129465122 129465122 G T LAMA2 Missense_Mutation p.R239L 0.05 deleterious(0) probably_damaging(1) TCGA-56-A4BY-01 6 130536402 130536402 A T SAMD3 Missense_Mutation p.V6D 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-56-A4BY-01 6 142396970 142396970 T C NMBR Missense_Mutation p.S330G 0.16 deleterious(0.01) possibly_damaging(0.697) TCGA-56-A4BY-01 6 26246990 26246990 G T HIST1H4G Silent p.T72T 0.39 TCGA-56-A4BY-01 6 26377191 26377191 G T BTN3A2 3'UTR 0.24 TCGA-56-A4BY-01 6 33154279 33154279 A G COL11A2 Intron 0.25 TCGA-56-A4BY-01 6 55223820 55223820 A T GFRAL Missense_Mutation p.Y279F 0.33 deleterious(0.04) benign(0.162) TCGA-56-A4BY-01 6 66205068 66205068 G C EYS Missense_Mutation p.P79R 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.648) TCGA-56-A4BY-01 6 71571565 71571565 C T B3GAT2 Missense_Mutation p.E285K 0.11 deleterious(0.01) possibly_damaging(0.899) TCGA-56-A4BY-01 7 102738861 102738861 C A ARMC10 Missense_Mutation p.A298D 0.12 tolerated(0.2) benign(0.271) TCGA-56-A4BY-01 7 133943061 133943061 T A LRGUK Missense_Mutation p.W751R 0.11 tolerated(0.24) possibly_damaging(0.901) TCGA-56-A4BY-01 7 148963955 148963955 G T ZNF783 Nonsense_Mutation p.E156* 0.28 TCGA-56-A4BY-01 7 158560417 158560417 C T ESYT2 Silent p.V332V 0.39 TCGA-56-A4BY-01 7 76179152 76179152 G T UPK3B Intron 0.21 TCGA-56-A4BY-01 7 91690600 91690600 A G AKAP9 Silent p.T1876T 0.21 TCGA-56-A4BY-01 7 95165840 95165840 C A ASB4 Missense_Mutation p.A357D 0.22 deleterious(0) probably_damaging(0.951) TCGA-56-A4BY-01 8 113237052 113237052 C T CSMD3 Missense_Mutation p.G3691E 0.26 tolerated(0.08) possibly_damaging(0.715) TCGA-56-A4BY-01 8 124798852 124798852 T G FAM91A1 Splice_Site p.X360_splice 0.52 TCGA-56-A4BY-01 8 17611496 17611496 G C MTUS1 Silent p.A607A 0.06 TCGA-56-A4BY-01 8 81892667 81892667 T A PAG1 Intron 0.19 TCGA-56-A4BY-01 8 87541201 87541201 G C CPNE3 Missense_Mutation p.C54S 0.44 tolerated(0.83) benign(0.011) TCGA-56-A4BY-01 8 87645114 87645114 T A CNGB3 Nonsense_Mutation p.R396* 0.20 TCGA-56-A4BY-01 8 98837380 98837380 C T LAPTM4B Missense_Mutation p.T292M 0.41 deleterious(0.01) probably_damaging(0.976) TCGA-56-A4BY-01 9 102595938 102595938 C T NR4A3 Intron 0.32 TCGA-56-A4BY-01 9 103947818 103947818 C - LPPR1 Frame_Shift_Del p.P15Rfs*41 0.26 TCGA-56-A4BY-01 9 104335447 104335447 T A GRIN3A 3'UTR 0.40 TCGA-56-A4BY-01 9 120476172 120476172 G T TLR4 Missense_Mutation p.S589I 0.39 tolerated(0.17) benign(0.008) TCGA-56-A4BY-01 9 136578233 136578233 G T SARDH Silent p.P388P 0.33 TCGA-56-A4BY-01 9 140772630 140772630 A G CACNA1B Missense_Mutation p.N82S 0.19 deleterious(0) benign(0.064) TCGA-56-A4BY-01 9 14784487 14784487 C G FREM1 Missense_Mutation p.Q1441H 0.12 tolerated(0.34) benign(0.014) TCGA-56-A4BY-01 9 17226241 17226241 G T CNTLN Nonsense_Mutation p.E164* 0.27 TCGA-56-A4BY-01 9 32631551 32631551 C A TAF1L Missense_Mutation p.V1343F 0.33 deleterious(0.04) benign(0.119) TCGA-56-A4BY-01 9 32784625 32784625 C G TMEM215 Missense_Mutation p.S148R 0.30 deleterious(0.01) probably_damaging(0.994) TCGA-56-A4BY-01 9 33442740 33442740 T C AQP3 Intron 0.28 TCGA-56-A4BY-01 X 10096087 10096087 G A WWC3 Nonsense_Mutation p.W722* 0.09 TCGA-56-A4BY-01 X 117785959 117785959 T A DOCK11 Missense_Mutation p.D1538E 0.62 deleterious(0.04) probably_damaging(0.994) TCGA-56-A4BY-01 X 37651255 37651255 C A CYBB Missense_Mutation p.L94M 0.65 deleterious(0.02) possibly_damaging(0.899) TCGA-56-A4BY-01 X 54784219 54784219 A C ITIH6 Missense_Mutation p.V763G 0.58 deleterious(0) benign(0) TCGA-56-A4BY-01 X 69649403 69649403 C T GDPD2 Nonsense_Mutation p.Q333* 0.82 TCGA-56-A4BY-01 X 89177799 89177799 C G TGIF2LX Missense_Mutation p.P239A 0.58 tolerated(0.26) benign(0.004) TCGA-56-A4ZJ-01 10 26939580 26939580 A G LINC00202-2 RNA 0.12 TCGA-56-A4ZJ-01 10 54531224 54531224 C A MBL2 Nonsense_Mutation p.E58* 0.12 TCGA-56-A4ZJ-01 10 72358327 72358327 C T PRF1 Missense_Mutation p.G384R 0.14 deleterious(0) possibly_damaging(0.788) TCGA-56-A4ZJ-01 11 123847566 123847566 G T OR10S1 Missense_Mutation p.S278Y 0.07 deleterious(0) probably_damaging(0.973) TCGA-56-A4ZJ-01 11 123848025 123848025 T C OR10S1 Missense_Mutation p.E125G 0.11 deleterious(0) probably_damaging(0.997) TCGA-56-A4ZJ-01 11 123887086 123887086 G A OR10G4 Missense_Mutation p.G269R 0.07 tolerated(0.19) benign(0.03) TCGA-56-A4ZJ-01 11 20657893 20657893 C G SLC6A5 Silent p.T555T 0.13 TCGA-56-A4ZJ-01 11 3877358 3877358 G A STIM1 5'UTR 0.20 TCGA-56-A4ZJ-01 11 55587427 55587427 T A OR5D18 Missense_Mutation p.F108I 0.10 deleterious(0.01) possibly_damaging(0.703) TCGA-56-A4ZJ-01 11 57156674 57156674 C A PRG2 Nonsense_Mutation p.E59* 0.13 TCGA-56-A4ZJ-01 11 83195205 83195205 C G DLG2 Missense_Mutation p.E754Q 0.05 tolerated(0.06) benign(0.206) TCGA-56-A4ZJ-01 12 112926874 112926874 G T PTPN11 Silent p.R498R 0.10 TCGA-56-A4ZJ-01 12 122687868 122687868 C T LRRC43 Missense_Mutation p.P617L 0.10 tolerated(0.31) benign(0.228) TCGA-56-A4ZJ-01 12 133683058 133683058 T A ZNF140 Missense_Mutation p.S399T 0.09 tolerated(0.3) probably_damaging(0.926) TCGA-56-A4ZJ-01 12 41831659 41831659 C A PDZRN4 Intron 0.08 TCGA-56-A4ZJ-01 12 51883579 51883579 C G SLC4A8 Silent p.V848V 0.05 TCGA-56-A4ZJ-01 12 6978451 6978451 G C TPI1 Silent p.L155L 0.04 TCGA-56-A4ZJ-01 12 70087518 70087518 G C BEST3 Missense_Mutation p.I139M 0.12 deleterious(0.01) possibly_damaging(0.688) TCGA-56-A4ZJ-01 12 7527208 7527208 C A CD163L1 Missense_Mutation p.G1080V 0.06 deleterious(0) probably_damaging(1) TCGA-56-A4ZJ-01 12 85266524 85266524 C G SLC6A15 Missense_Mutation p.D387H 0.11 tolerated(0.11) benign(0.025) TCGA-56-A4ZJ-01 13 103718519 103718519 A G SLC10A2 Silent p.N27N 0.05 TCGA-56-A4ZJ-01 13 108518454 108518454 G T FAM155A Missense_Mutation p.P164H 0.12 tolerated(0.16) probably_damaging(0.999) TCGA-56-A4ZJ-01 13 53035461 53035461 C G CKAP2 Missense_Mutation p.A168G 0.08 deleterious(0.01) benign(0.172) TCGA-56-A4ZJ-01 13 70413225 70413225 C A KLHL1 Missense_Mutation p.A433S 0.07 deleterious(0.04) possibly_damaging(0.677) TCGA-56-A4ZJ-01 14 31343999 31343999 G A COCH Intron 0.16 TCGA-56-A4ZJ-01 14 81610131 81610131 C A TSHR Missense_Mutation p.P577T 0.11 tolerated(0.68) benign(0.03) TCGA-56-A4ZJ-01 15 43940114 43940114 C A CATSPER2 Splice_Site p.X49_splice 0.06 TCGA-56-A4ZJ-01 15 90176993 90176993 T C KIF7 Missense_Mutation p.Q839R 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-56-A4ZJ-01 16 55862747 55862747 C A CES1 Silent p.L64L 0.05 TCGA-56-A4ZJ-01 16 56899140 56899140 A T SLC12A3 5'UTR 0.07 TCGA-56-A4ZJ-01 16 61760902 61760902 C A CDH8 Intron 0.10 TCGA-56-A4ZJ-01 16 89922016 89922016 G A SPIRE2 Silent p.G300G 0.19 TCGA-56-A4ZJ-01 17 61972349 61972349 C G CSH1 3'UTR 0.08 TCGA-56-A4ZJ-01 18 13059211 13059212 - T CEP192 Frame_Shift_Ins p.S1464Ffs*9 0.12 TCGA-56-A4ZJ-01 18 28919734 28919734 C A DSG1 Missense_Mutation p.T478K 0.08 deleterious(0) probably_damaging(0.973) TCGA-56-A4ZJ-01 18 67806945 67806945 T C RTTN Missense_Mutation p.E893G 0.10 deleterious(0) probably_damaging(0.981) TCGA-56-A4ZJ-01 19 14876591 14876591 C A EMR2 Missense_Mutation p.Q220H 0.09 deleterious(0) possibly_damaging(0.506) TCGA-56-A4ZJ-01 19 17571367 17571367 C T NXNL1 Silent p.E104E 0.12 TCGA-56-A4ZJ-01 19 38860811 38860811 G T CATSPERG Silent p.T1042T 0.09 TCGA-56-A4ZJ-01 19 42191127 42191127 C T CEACAM7 Silent p.L30L 0.09 TCGA-56-A4ZJ-01 19 5032951 5032951 C T KDM4B Missense_Mutation p.T17M 0.09 probably_damaging(0.994) TCGA-56-A4ZJ-01 19 51165194 51165194 G A SHANK1 3'UTR 0.07 TCGA-56-A4ZJ-01 19 58571412 58571412 C G ZNF135 Intron 0.07 TCGA-56-A4ZJ-01 19 9237102 9237102 G T OR7G3 Silent p.P175P 0.09 TCGA-56-A4ZJ-01 1 114514513 114514513 C T HIPK1 Silent p.T1027T 0.05 TCGA-56-A4ZJ-01 1 161166528 161166528 C T ADAMTS4 Missense_Mutation p.R259H 0.08 tolerated(0.13) possibly_damaging(0.541) TCGA-56-A4ZJ-01 1 165386331 165386331 C T RXRG Missense_Mutation p.R190H 0.09 deleterious(0) probably_damaging(0.991) TCGA-56-A4ZJ-01 1 168148301 168148301 G T TIPRL 5'UTR 0.11 TCGA-56-A4ZJ-01 1 197070690 197070690 T A ASPM Missense_Mutation p.Y2564F 0.07 tolerated(0.25) probably_damaging(0.999) TCGA-56-A4ZJ-01 1 248756997 248756997 C T OR2T10 Missense_Mutation p.G25S 0.05 tolerated(0.69) benign(0.005) TCGA-56-A4ZJ-01 1 43240477 43240477 A T C1orf50 Missense_Mutation p.N118Y 0.08 deleterious(0.01) possibly_damaging(0.78) TCGA-56-A4ZJ-01 1 57257972 57257972 G A C1orf168 Nonsense_Mutation p.Q172* 0.07 TCGA-56-A4ZJ-01 1 65730565 65730565 T A DNAJC6 5'UTR 0.21 TCGA-56-A4ZJ-01 1 90048456 90048456 C T LRRC8B Missense_Mutation p.P83S 0.06 tolerated(0.57) benign(0) TCGA-56-A4ZJ-01 20 2321250 2321250 C A TGM3 3'UTR 0.09 TCGA-56-A4ZJ-01 20 32677597 32677598 AT - EIF2S2 Frame_Shift_Del p.I314Qfs*19 0.09 TCGA-56-A4ZJ-01 20 49212026 49212026 T A FAM65C Missense_Mutation p.N640Y 0.15 deleterious(0) possibly_damaging(0.517) TCGA-56-A4ZJ-01 21 10862967 10862967 C A IGHV1OR21-1 Missense_Mutation p.T88N 0.04 deleterious(0.02) benign(0.212) TCGA-56-A4ZJ-01 22 22730774 22730774 C T IGLV5-45 Missense_Mutation p.S90F 0.15 deleterious(0.01) possibly_damaging(0.67) TCGA-56-A4ZJ-01 2 10581786 10581786 C T ODC1 Missense_Mutation p.D364N 0.08 deleterious(0.02) possibly_damaging(0.472) TCGA-56-A4ZJ-01 2 112843635 112843635 G T TMEM87B Missense_Mutation p.A298S 0.05 deleterious(0) possibly_damaging(0.895) TCGA-56-A4ZJ-01 2 168106369 168106369 C A XIRP2 Missense_Mutation p.Q2823K 0.10 benign(0.007) TCGA-56-A4ZJ-01 2 220505588 220505588 G T SLC4A3 Silent p.T1202T 0.10 TCGA-56-A4ZJ-01 2 220505589 220505589 G T SLC4A3 Missense_Mutation p.A1203S 0.10 tolerated(0.4) benign(0.167) TCGA-56-A4ZJ-01 2 225666714 225666714 A G DOCK10 Missense_Mutation p.S1438P 0.07 tolerated(0.05) possibly_damaging(0.833) TCGA-56-A4ZJ-01 2 227662143 227662143 A C IRS1 Missense_Mutation p.F438V 0.06 tolerated(0.23) probably_damaging(0.968) TCGA-56-A4ZJ-01 2 44459641 44459641 A G PPM1B 3'Flank 0.11 TCGA-56-A4ZJ-01 2 48956317 48956317 C T LHCGR Missense_Mutation p.D95N 0.09 tolerated(0.34) possibly_damaging(0.497) TCGA-56-A4ZJ-01 2 64796343 64796343 C G AFTPH Silent p.T735T 0.11 TCGA-56-A4ZJ-01 2 73718151 73718151 A T ALMS1 Missense_Mutation p.Q3021L 0.06 possibly_damaging(0.681) TCGA-56-A4ZJ-01 2 90060768 90060768 A T IGKV6D-21 Missense_Mutation p.T39S 0.12 tolerated(0.38) possibly_damaging(0.482) TCGA-56-A4ZJ-01 2 90060964 90060964 C A IGKV6D-21 Missense_Mutation p.A104E 0.06 tolerated(0.27) benign(0.006) TCGA-56-A4ZJ-01 2 96523187 96523187 T C ANKRD36C Missense_Mutation p.Q344R 0.10 deleterious(0) benign(0.017) TCGA-56-A4ZJ-01 3 124454006 124454006 C T UMPS Missense_Mutation p.P75S 0.14 deleterious(0) probably_damaging(1) TCGA-56-A4ZJ-01 3 124454038 124454038 C G UMPS Missense_Mutation p.I85M 0.14 tolerated(0.43) benign(0.124) TCGA-56-A4ZJ-01 3 124456439 124456439 C A UMPS Missense_Mutation p.T112N 0.11 tolerated(0.35) benign(0.01) TCGA-56-A4ZJ-01 3 124456467 124456467 C T UMPS Silent p.I121I 0.09 TCGA-56-A4ZJ-01 3 124456519 124456519 C G UMPS Missense_Mutation p.L139V 0.11 deleterious(0) probably_damaging(0.951) TCGA-56-A4ZJ-01 3 125701193 125701193 C T ROPN1B Silent p.S159S 0.15 TCGA-56-A4ZJ-01 3 156271509 156271509 C A SSR3 Missense_Mutation p.M65I 0.07 tolerated(0.9) benign(0.01) TCGA-56-A4ZJ-01 3 165491167 165491167 T A BCHE 3'UTR 0.08 TCGA-56-A4ZJ-01 3 182759356 182759356 T A MCCC1 Missense_Mutation p.Q422H 0.15 deleterious(0) probably_damaging(0.948) TCGA-56-A4ZJ-01 3 97868590 97868590 G T OR5H14 Missense_Mutation p.D121Y 0.08 deleterious(0.01) probably_damaging(0.967) TCGA-56-A4ZJ-01 3 97983774 97983774 T C OR5H6 Missense_Mutation p.F216L 0.14 tolerated(0.18) possibly_damaging(0.534) TCGA-56-A4ZJ-01 3 99513529 99513529 C A COL8A1 Missense_Mutation p.P262T 0.11 deleterious(0.02) unknown(0) TCGA-56-A4ZJ-01 4 156757951 156757951 A G ASIC5 Silent p.V375V 0.06 TCGA-56-A4ZJ-01 4 436396 436396 T G ZNF721 Missense_Mutation p.K620N 0.09 deleterious(0.01) possibly_damaging(0.877) TCGA-56-A4ZJ-01 4 48147581 48147581 T C TEC Missense_Mutation p.N366S 0.09 tolerated(0.07) benign(0.424) TCGA-56-A4ZJ-01 4 57209064 57209064 T C AASDH Silent p.S948S 0.08 TCGA-56-A4ZJ-01 4 87967991 87967991 A G AFF1 Missense_Mutation p.I102V 0.07 tolerated(0.14) benign(0.387) TCGA-56-A4ZJ-01 5 151784612 151784612 T A NMUR2 Silent p.P21P 0.11 TCGA-56-A4ZJ-01 5 24509789 24509789 G T CDH10 Missense_Mutation p.P381H 0.05 deleterious(0) probably_damaging(0.994) TCGA-56-A4ZJ-01 5 26903929 26903929 C A CDH9 Silent p.T272T 0.24 TCGA-56-A4ZJ-01 5 32089043 32089043 C T PDZD2 Missense_Mutation p.P1830L 0.21 deleterious(0.02) benign(0.263) TCGA-56-A4ZJ-01 5 45267243 45267243 T A HCN1 Silent p.P577P 0.10 TCGA-56-A4ZJ-01 5 75979662 75979662 G A IQGAP2 Silent p.K1275K 0.08 TCGA-56-A4ZJ-01 6 132860128 132860128 A T TAAR9 Missense_Mutation p.T234S 0.09 tolerated(0.32) benign(0.002) TCGA-56-A4ZJ-01 6 26271298 26271298 A G HIST1H3G Silent p.F105F 0.09 TCGA-56-A4ZJ-01 6 52881011 52881011 A T ICK Missense_Mutation p.M234K 0.09 deleterious(0.02) probably_damaging(0.947) TCGA-56-A4ZJ-01 6 84233346 84233346 T A PRSS35 Nonsense_Mutation p.C62* 0.06 TCGA-56-A4ZJ-01 6 89975417 89975417 T C GABRR2 Silent p.T268T 0.14 TCGA-56-A4ZJ-01 6 90411357 90411357 T G MDN1 Missense_Mutation p.N2783H 0.06 benign(0.023) TCGA-56-A4ZJ-01 7 158485648 158485648 T A NCAPG2 Nonsense_Mutation p.R90* 0.17 TCGA-56-A4ZJ-01 7 16640475 16640475 C T ANKMY2 Missense_Mutation p.G413R 0.20 tolerated_low_confidence(0.54) benign(0) TCGA-56-A4ZJ-01 7 50566896 50566896 C A DDC Missense_Mutation p.G276C 0.17 deleterious(0) probably_damaging(1) TCGA-56-A4ZJ-01 7 5352257 5352257 G A TNRC18 Silent p.V2755V 0.07 TCGA-56-A4ZJ-01 7 57522166 57522166 G C ZNF716 Missense_Mutation p.G14R 0.08 tolerated(0.06) benign(0.139) TCGA-56-A4ZJ-01 7 88965936 88965936 C A ZNF804B Missense_Mutation p.L1214M 0.05 deleterious(0.02) probably_damaging(0.999) TCGA-56-A4ZJ-01 8 100847774 100847774 A G VPS13B Silent p.P3275P 0.11 TCGA-56-A4ZJ-01 8 110980664 110980664 C A KCNV1 Missense_Mutation p.A386S 0.10 deleterious(0) probably_damaging(0.997) TCGA-56-A4ZJ-01 8 120595968 120595968 T A ENPP2 Missense_Mutation p.N563I 0.06 deleterious(0) probably_damaging(0.997) TCGA-56-A4ZJ-01 8 12952596 12952596 T A DLC1 Missense_Mutation p.Q1109L 0.08 deleterious(0) probably_damaging(0.998) TCGA-56-A4ZJ-01 8 69020414 69020414 A G PREX2 Missense_Mutation p.H929R 0.11 tolerated(0.15) probably_damaging(0.983) TCGA-56-A4ZJ-01 8 73480012 73480012 A G KCNB2 Missense_Mutation p.R15G 0.12 deleterious(0) possibly_damaging(0.722) TCGA-56-A4ZJ-01 8 86240837 86240837 G T CA1 Missense_Mutation p.N246K 0.07 deleterious(0.02) possibly_damaging(0.684) TCGA-56-A4ZJ-01 8 99440702 99440702 C A KCNS2 Silent p.P165P 0.10 TCGA-56-A4ZJ-01 9 111617631 111617631 C A ACTL7B Missense_Mutation p.G194W 0.15 deleterious(0) probably_damaging(1) TCGA-56-A4ZJ-01 9 33943515 33943515 C G UBAP2 Missense_Mutation p.E540Q 0.12 tolerated(0.69) probably_damaging(1) TCGA-56-A4ZJ-01 9 43133228 43133228 A G ANKRD20A3 Splice_Site p.X68_splice 0.17 TCGA-56-A4ZJ-01 X 100357343 100357343 G A CENPI Missense_Mutation p.G103R 0.08 deleterious(0.02) possibly_damaging(0.831) TCGA-56-A4ZJ-01 X 100357344 100357344 G T CENPI Missense_Mutation p.G103V 0.08 deleterious(0) probably_damaging(0.982) TCGA-56-A4ZJ-01 X 106186402 106186402 C A MORC4 Silent p.V573V 0.08 TCGA-56-A4ZJ-01 X 106312511 106312511 C T RBM41 Missense_Mutation p.R350K 0.07 tolerated(0.63) benign(0.076) TCGA-56-A4ZJ-01 X 107169523 107169523 C T MID2 Silent p.S599S 0.10 TCGA-56-A4ZJ-01 X 107400212 107400212 A T COL4A6 3'UTR 0.10 TCGA-56-A4ZJ-01 X 122387273 122387273 C A GRIA3 Missense_Mutation p.P130T 0.06 deleterious(0) probably_damaging(1) TCGA-56-A4ZJ-01 X 123514629 123514629 G T TENM1 Missense_Mutation p.H2652Q 0.06 deleterious(0) benign(0.306) TCGA-56-A4ZJ-01 X 123785893 123785893 G A TENM1 Missense_Mutation p.R484W 0.07 deleterious(0) probably_damaging(0.968) TCGA-56-A4ZJ-01 X 129159270 129159270 C A BCORL1 Silent p.R1332R 0.07 TCGA-56-A4ZJ-01 X 132161143 132161143 G T USP26 Nonsense_Mutation p.S369* 0.10 TCGA-56-A4ZJ-01 X 134166352 134166352 C A FAM127A 5'UTR 0.12 TCGA-56-A4ZJ-01 X 14550448 14550448 G T GLRA2 Missense_Mutation p.M52I 0.09 tolerated(0.09) possibly_damaging(0.852) TCGA-56-A4ZJ-01 X 14550449 14550449 G T GLRA2 Nonsense_Mutation p.G53* 0.09 TCGA-56-A4ZJ-01 X 153696691 153696691 C A PLXNA3 Missense_Mutation p.L1337M 0.08 deleterious(0) probably_damaging(1) TCGA-56-A4ZJ-01 X 20173575 20173575 C T RPS6KA3 Missense_Mutation p.G722S 0.05 tolerated(0.63) benign(0.15) TCGA-56-A4ZJ-01 X 23410900 23410900 G T PTCHD1 Missense_Mutation p.G422V 0.08 deleterious(0) probably_damaging(0.974) TCGA-56-A4ZJ-01 X 24906128 24906128 G T POLA1 Missense_Mutation p.W1345C 0.10 deleterious(0.03) possibly_damaging(0.671) TCGA-56-A4ZJ-01 X 38009119 38009119 A G SRPX Missense_Mutation p.F414L 0.10 deleterious(0) probably_damaging(0.996) TCGA-56-A4ZJ-01 X 43590485 43590485 T C MAOA Intron 0.08 TCGA-56-A4ZJ-01 X 48053642 48053642 G C SSX5 Missense_Mutation p.P109R 0.09 deleterious(0) possibly_damaging(0.905) TCGA-56-A4ZJ-01 X 48832525 48832525 T G GRIPAP1 Splice_Site p.X729_splice 0.13 TCGA-56-A4ZJ-01 X 67273650 67273650 C A OPHN1 Missense_Mutation p.D721Y 0.19 deleterious_low_confidence(0) possibly_damaging(0.808) TCGA-56-A4ZJ-01 X 67421507 67421507 C A OPHN1 Nonsense_Mutation p.E327* 0.09 TCGA-56-A4ZJ-01 X 69458099 69458099 G C AWAT1 Silent p.L166L 0.06 TCGA-56-A4ZJ-01 X 69595127 69595127 G C KIF4A Missense_Mutation p.E618Q 0.04 deleterious(0) probably_damaging(0.933) TCGA-56-A4ZJ-01 X 83320107 83320107 G T RPS6KA6 Missense_Mutation p.H662N 0.07 tolerated(0.21) benign(0.038) TCGA-56-A4ZK-01 10 117704303 117704303 G T ATRNL1 3'UTR 0.30 TCGA-56-A4ZK-01 10 13481154 13481154 T C BEND7 3'UTR 0.29 TCGA-56-A4ZK-01 10 1569032 1569032 G T ADARB2 Intron 0.21 TCGA-56-A4ZK-01 10 17130191 17130191 T A CUBN Missense_Mutation p.H640L 0.20 deleterious(0) probably_damaging(0.97) TCGA-56-A4ZK-01 10 17726886 17726886 C G STAM Nonsense_Mutation p.S86* 0.14 TCGA-56-A4ZK-01 10 21414779 21414779 C T C10orf113 Silent p.K147K 0.24 TCGA-56-A4ZK-01 10 38241136 38241136 C T ZNF25 Silent p.E430E 0.14 TCGA-56-A4ZK-01 10 50824078 50824078 T A CHAT Intron 0.30 TCGA-56-A4ZK-01 11 111789712 111789712 T G C11orf52 Missense_Mutation p.C6G 0.36 tolerated(0.12) benign(0.121) TCGA-56-A4ZK-01 11 117063299 117063299 T C SIDT2 Missense_Mutation p.I664T 0.36 deleterious(0.04) possibly_damaging(0.627) TCGA-56-A4ZK-01 11 125831787 125831787 C A CDON Missense_Mutation p.V1155L 0.13 tolerated(0.15) benign(0.003) TCGA-56-A4ZK-01 11 1275946 1275946 T G MUC5B Missense_Mutation p.V5167G 0.23 unknown(0) TCGA-56-A4ZK-01 11 130278437 130278437 C G ADAMTS8 Missense_Mutation p.R674P 0.26 deleterious(0) benign(0.002) TCGA-56-A4ZK-01 11 133712418 133712418 C T SPATA19 Silent p.E133E 0.10 TCGA-56-A4ZK-01 11 18587957 18587957 G T UEVLD Missense_Mutation p.L144I 0.25 tolerated(0.45) benign(0.005) TCGA-56-A4ZK-01 11 18737220 18737220 C T IGSF22 Silent p.V430V 0.09 TCGA-56-A4ZK-01 11 1955596 1955596 A T TNNT3 Missense_Mutation p.K134M 0.27 deleterious(0.04) benign(0.036) TCGA-56-A4ZK-01 11 21556062 21556062 T A NELL1 Splice_Site p.X596_splice 0.12 TCGA-56-A4ZK-01 11 44286626 44286626 G C ALX4 Silent p.P338P 0.15 TCGA-56-A4ZK-01 11 4608239 4608239 T C OR52I2 Missense_Mutation p.I66T 0.12 tolerated(0.59) benign(0.004) TCGA-56-A4ZK-01 11 55798067 55798067 C A OR5AS1 Missense_Mutation p.P58H 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-56-A4ZK-01 11 59603320 59603320 A G GIF Missense_Mutation p.V345A 0.28 tolerated(0.76) benign(0.001) TCGA-56-A4ZK-01 11 6048310 6048310 C A OR56A1 Missense_Mutation p.A209S 0.15 tolerated(0.11) benign(0.158) TCGA-56-A4ZK-01 11 61632657 61632657 C G FADS2 Missense_Mutation p.H397Q 0.23 tolerated(0.13) benign(0.098) TCGA-56-A4ZK-01 11 61908248 61908249 - C INCENP Frame_Shift_Ins p.R475Qfs*47 0.20 TCGA-56-A4ZK-01 11 63960589 63960589 G A STIP1 Missense_Mutation p.V17M 0.10 deleterious(0.02) benign(0.262) TCGA-56-A4ZK-01 11 6867630 6867630 C A OR10A5 Missense_Mutation p.F239L 0.35 deleterious(0.03) possibly_damaging(0.787) TCGA-56-A4ZK-01 11 73007581 73007581 C T P2RY6 Silent p.G6G 0.13 TCGA-56-A4ZK-01 11 76255412 76255412 G T C11orf30 Missense_Mutation p.R940L 0.24 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-56-A4ZK-01 11 89177319 89177319 G T NOX4 Missense_Mutation p.A144E 0.38 deleterious(0.02) benign(0.358) TCGA-56-A4ZK-01 12 10145849 10145849 A T CLEC1B Missense_Mutation p.C195S 0.35 deleterious(0) probably_damaging(1) TCGA-56-A4ZK-01 12 101560272 101560272 C A SLC5A8 Missense_Mutation p.R509M 0.16 deleterious(0) probably_damaging(0.923) TCGA-56-A4ZK-01 12 113907102 113907102 G T LHX5 Missense_Mutation p.S74R 0.20 tolerated(0.07) possibly_damaging(0.809) TCGA-56-A4ZK-01 12 130184628 130184628 G T TMEM132D Missense_Mutation p.P232Q 0.30 deleterious(0.02) benign(0.078) TCGA-56-A4ZK-01 12 21471746 21471746 C A SLCO1A2 Missense_Mutation p.V58F 0.09 deleterious(0) possibly_damaging(0.461) TCGA-56-A4ZK-01 12 30882195 30882195 C A CAPRIN2 Missense_Mutation p.W390L 0.31 deleterious(0) possibly_damaging(0.699) TCGA-56-A4ZK-01 12 5153725 5153725 C T KCNA5 Silent p.L138L 0.37 TCGA-56-A4ZK-01 12 54925129 54925129 T A NCKAP1L Silent p.I864I 0.26 TCGA-56-A4ZK-01 12 56998444 56998444 G A BAZ2A Missense_Mutation p.A965V 0.50 deleterious(0.01) probably_damaging(0.993) TCGA-56-A4ZK-01 12 57498358 57498358 C G STAT6 Missense_Mutation p.K367N 0.15 deleterious(0) probably_damaging(1) TCGA-56-A4ZK-01 12 68595663 68595663 G A IL26 Missense_Mutation p.L160F 0.26 tolerated(0.09) benign(0.028) TCGA-56-A4ZK-01 12 69968242 69968242 C T FRS2 Missense_Mutation p.A345V 0.29 deleterious(0.02) benign(0.035) TCGA-56-A4ZK-01 12 78515848 78515848 C T NAV3 Missense_Mutation p.S1293F 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-56-A4ZK-01 12 80626874 80626874 C T OTOGL Nonsense_Mutation p.Q263* 0.39 TCGA-56-A4ZK-01 12 85408229 85408229 T C TSPAN19 3'UTR 0.32 TCGA-56-A4ZK-01 13 114541138 114541138 C G GAS6 Missense_Mutation p.G165R 0.09 deleterious(0) probably_damaging(1) TCGA-56-A4ZK-01 13 20346509 20346509 C G PSPC1 Missense_Mutation p.E183Q 0.14 deleterious(0) probably_damaging(0.926) TCGA-56-A4ZK-01 13 25828048 25828049 - A MTMR6 Frame_Shift_Ins p.E402Gfs*15 0.25 TCGA-56-A4ZK-01 13 42877287 42877287 G T AKAP11 Missense_Mutation p.A1469S 0.30 deleterious(0) benign(0.339) TCGA-56-A4ZK-01 13 49039146 49039146 G - RB1 Frame_Shift_Del p.V742Ffs*2 0.22 TCGA-56-A4ZK-01 13 60566634 60566634 C G DIAPH3 Missense_Mutation p.M366I 0.32 deleterious(0.01) probably_damaging(0.965) TCGA-56-A4ZK-01 14 106109985 106109985 G C IGHG2 Missense_Mutation p.I211M 0.44 deleterious(0.01) benign(0.211) TCGA-56-A4ZK-01 14 19553600 19553600 G A POTEG Missense_Mutation p.G62S 0.06 deleterious_low_confidence(0.02) benign(0.101) TCGA-56-A4ZK-01 14 20770096 20770096 C T TTC5 Missense_Mutation p.R27Q 0.29 deleterious(0.01) possibly_damaging(0.833) TCGA-56-A4ZK-01 14 35181954 35181954 G A CFL2 3'UTR 0.19 TCGA-56-A4ZK-01 14 37737993 37737993 A G MIPOL1 Missense_Mutation p.K128E 0.24 tolerated(0.05) benign(0.106) TCGA-56-A4ZK-01 14 45370036 45370036 G A C14orf28 Missense_Mutation p.G133E 0.17 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-56-A4ZK-01 14 47426703 47426703 C G MDGA2 Missense_Mutation p.G655R 0.25 tolerated(0.12) probably_damaging(0.965) TCGA-56-A4ZK-01 14 55618609 55618609 C G DLGAP5 Missense_Mutation p.M724I 0.33 tolerated(0.24) benign(0.004) TCGA-56-A4ZK-01 14 58036695 58036695 A T SLC35F4 Missense_Mutation p.L349M 0.29 deleterious(0.03) benign(0.168) TCGA-56-A4ZK-01 14 61263016 61263016 C A MNAT1 Missense_Mutation p.N57K 0.21 deleterious(0.03) probably_damaging(0.992) TCGA-56-A4ZK-01 14 73718244 73718244 G A PAPLN Intron 0.34 TCGA-56-A4ZK-01 14 74061844 74061844 C G ACOT4 Missense_Mutation p.T251R 0.38 deleterious(0) probably_damaging(1) TCGA-56-A4ZK-01 14 74061885 74061885 A G ACOT4 Missense_Mutation p.I265V 0.40 tolerated(0.06) benign(0.011) TCGA-56-A4ZK-01 14 77576242 77576242 C T CIPC Missense_Mutation p.P75L 0.08 tolerated(0.17) benign(0.003) TCGA-56-A4ZK-01 14 95670399 95670399 C T CLMN Silent p.E429E 0.64 TCGA-56-A4ZK-01 15 23931752 23931752 C T NDN Missense_Mutation p.A205T 0.09 tolerated(0.1) probably_damaging(0.999) TCGA-56-A4ZK-01 15 25302033 25302033 A T SNORD116-3 RNA 0.21 TCGA-56-A4ZK-01 15 25423715 25423715 G A SNORD115-6 5'Flank 0.53 TCGA-56-A4ZK-01 15 25432709 25432710 - C SNORD115-10 RNA 0.09 TCGA-56-A4ZK-01 15 25455143 25455143 T G SNORD115-22 RNA 0.16 TCGA-56-A4ZK-01 15 25475815 25475815 A G SNORD115-33 5'Flank 0.37 TCGA-56-A4ZK-01 15 40282561 40282561 G C EIF2AK4 Missense_Mutation p.D872H 0.26 deleterious(0.01) benign(0.141) TCGA-56-A4ZK-01 15 41815052 41815052 C A RPAP1 Missense_Mutation p.A885S 0.50 deleterious(0.05) possibly_damaging(0.51) TCGA-56-A4ZK-01 15 45392066 45392066 G C DUOX2 Missense_Mutation p.S1070W 0.42 deleterious(0.01) probably_damaging(0.917) TCGA-56-A4ZK-01 15 56923884 56923884 A G ZNF280D Silent p.L918L 0.52 TCGA-56-A4ZK-01 15 69733298 69733298 A G KIF23 Silent p.P753P 0.09 TCGA-56-A4ZK-01 16 1842324 1842324 G T IGFALS Missense_Mutation p.T70K 0.25 tolerated(0.73) possibly_damaging(0.557) TCGA-56-A4ZK-01 16 53191422 53191422 A G CHD9 Missense_Mutation p.H474R 0.19 benign(0.079) TCGA-56-A4ZK-01 16 66969362 66969362 C G CES2 Missense_Mutation p.R6G 0.29 tolerated_low_confidence(0.75) benign(0) TCGA-56-A4ZK-01 16 705109 705109 C T WDR90 Silent p.D506D 0.25 TCGA-56-A4ZK-01 16 70818678 70818678 C T VAC14 Splice_Site p.X162_splice 0.17 TCGA-56-A4ZK-01 16 72831887 72831887 T C ZFHX3 Missense_Mutation p.N1565S 0.31 probably_damaging(0.97) TCGA-56-A4ZK-01 16 88690429 88690429 C T ZC3H18 Silent p.I619I 0.21 TCGA-56-A4ZK-01 16 88705502 88705502 G C IL17C Missense_Mutation p.E40D 0.24 tolerated(0.29) benign(0.015) TCGA-56-A4ZK-01 17 10439848 10439848 C T MYH2 Missense_Mutation p.R658K 0.52 tolerated(0.32) benign(0.052) TCGA-56-A4ZK-01 17 26086080 26086080 G A NOS2 Missense_Mutation p.R1061W 0.19 deleterious(0.01) probably_damaging(0.932) TCGA-56-A4ZK-01 17 27228537 27228537 C T DHRS13 Missense_Mutation p.R115Q 0.22 tolerated(0.07) possibly_damaging(0.825) TCGA-56-A4ZK-01 17 42953383 42953383 A G EFTUD2 Missense_Mutation p.L263P 0.23 deleterious(0) probably_damaging(1) TCGA-56-A4ZK-01 17 46670483 46670483 C A HOXB5 Missense_Mutation p.D188Y 0.20 deleterious(0) probably_damaging(0.99) TCGA-56-A4ZK-01 17 48437591 48437591 C G XYLT2 Missense_Mutation p.S846C 0.24 deleterious(0) possibly_damaging(0.759) TCGA-56-A4ZK-01 17 4995344 4995344 C G ZFP3 Nonsense_Mutation p.S182* 0.14 TCGA-56-A4ZK-01 17 5064867 5064867 T A USP6 Missense_Mutation p.V958E 0.47 deleterious_low_confidence(0.01) probably_damaging(0.934) TCGA-56-A4ZK-01 17 55478784 55478784 G C MSI2 Silent p.A119A 0.25 TCGA-56-A4ZK-01 17 61684801 61684801 G A TACO1 Missense_Mutation p.E224K 0.29 deleterious(0.02) benign(0.376) TCGA-56-A4ZK-01 17 61950637 61950637 C A CSH2 Missense_Mutation p.G25C 0.14 deleterious(0) possibly_damaging(0.89) TCGA-56-A4ZK-01 17 62788537 62788537 C G PLEKHM1P RNA 0.06 TCGA-56-A4ZK-01 17 67013930 67013930 C A ABCA9 Missense_Mutation p.G923V 0.28 deleterious(0.01) probably_damaging(0.927) TCGA-56-A4ZK-01 17 72218671 72218671 C T TTYH2 Silent p.N59N 0.22 TCGA-56-A4ZK-01 17 7578275 7578275 G A TP53 Nonsense_Mutation p.Q192* 0.53 TCGA-56-A4ZK-01 17 76446412 76446412 G C DNAH17 Missense_Mutation p.A3641G 0.30 probably_damaging(0.983) TCGA-56-A4ZK-01 18 117107 117107 A G ROCK1P1 RNA 0.16 TCGA-56-A4ZK-01 18 24442508 24442508 C G AQP4 Missense_Mutation p.V29L 0.15 tolerated(0.34) benign(0.016) TCGA-56-A4ZK-01 18 29125689 29125689 G T DSG2 Silent p.A780A 0.29 TCGA-56-A4ZK-01 18 580660 580660 C T CETN1 Silent p.I84I 0.25 TCGA-56-A4ZK-01 19 1073244 1073244 C T HMHA1 Missense_Mutation p.T189I 0.14 deleterious(0) probably_damaging(0.968) TCGA-56-A4ZK-01 19 11978784 11978784 T A ZNF439 Nonsense_Mutation p.C300* 0.16 TCGA-56-A4ZK-01 19 14273970 14273970 C T LPHN1 Missense_Mutation p.D220N 0.21 deleterious(0) probably_damaging(0.993) TCGA-56-A4ZK-01 19 18278049 18278049 G C PIK3R2 Missense_Mutation p.D557H 0.20 deleterious(0) probably_damaging(0.993) TCGA-56-A4ZK-01 19 18278115 18278115 G T PIK3R2 Missense_Mutation p.V579L 0.30 tolerated(0.24) benign(0.001) TCGA-56-A4ZK-01 19 22605075 22605075 G T ZNF98 5'UTR 0.24 TCGA-56-A4ZK-01 19 2291217 2291217 T C LINGO3 Missense_Mutation p.T187A 0.08 deleterious(0.01) possibly_damaging(0.515) TCGA-56-A4ZK-01 19 24270065 24270065 C G ZNF254 5'UTR 0.24 TCGA-56-A4ZK-01 19 2433845 2433845 C G LMNB2 Missense_Mutation p.Q487H 0.25 deleterious(0.02) benign(0.012) TCGA-56-A4ZK-01 19 33089119 33089119 C T ANKRD27 Missense_Mutation p.V1029M 0.24 tolerated_low_confidence(0.07) possibly_damaging(0.623) TCGA-56-A4ZK-01 19 35551696 35551696 C A HPN Missense_Mutation p.H262Q 0.27 tolerated(0.27) benign(0.117) TCGA-56-A4ZK-01 19 35741402 35741402 C A LSR Missense_Mutation p.D146E 0.24 tolerated(0.37) benign(0.005) TCGA-56-A4ZK-01 19 35741403 35741403 A T LSR Missense_Mutation p.N147Y 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-56-A4ZK-01 19 41117810 41117810 G C LTBP4 Missense_Mutation p.R767P 0.34 deleterious(0) probably_damaging(0.988) TCGA-56-A4ZK-01 19 41858600 41858600 T C TGFB1 Missense_Mutation p.H117R 0.12 tolerated(0.51) benign(0.002) TCGA-56-A4ZK-01 19 4652083 4652083 C T TNFAIP8L1 Silent p.L68L 0.39 TCGA-56-A4ZK-01 19 47542795 47542795 G T NPAS1 Missense_Mutation p.G312V 0.40 deleterious(0.01) benign(0.08) TCGA-56-A4ZK-01 19 4839425 4839425 C A PLIN3 Missense_Mutation p.A362S 0.20 deleterious(0.02) possibly_damaging(0.612) TCGA-56-A4ZK-01 19 49259392 49259392 C A FGF21 5'UTR 0.40 TCGA-56-A4ZK-01 19 49339709 49339709 C G HSD17B14 5'UTR 0.33 TCGA-56-A4ZK-01 19 51645915 51645915 C G SIGLEC7 Missense_Mutation p.L97V 0.18 deleterious(0) probably_damaging(0.999) TCGA-56-A4ZK-01 19 5220138 5220138 T A PTPRS Missense_Mutation p.R1193W 0.22 deleterious(0) probably_damaging(1) TCGA-56-A4ZK-01 19 54632655 54632655 G A PRPF31 Silent p.L428L 0.42 TCGA-56-A4ZK-01 19 57642159 57642159 G C USP29 Missense_Mutation p.D706H 0.30 deleterious(0.01) probably_damaging(0.963) TCGA-56-A4ZK-01 19 58117652 58117652 C G ZNF530 Silent p.G253G 0.28 TCGA-56-A4ZK-01 19 58132344 58132344 G T ZNF134 Missense_Mutation p.R286M 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-56-A4ZK-01 19 58232295 58232295 G A ZNF671 Missense_Mutation p.H387Y 0.19 deleterious(0) probably_damaging(1) TCGA-56-A4ZK-01 1 152648679 152648679 G A LCE2C Missense_Mutation p.C63Y 0.28 deleterious_low_confidence(0) unknown(0) TCGA-56-A4ZK-01 1 154600443 154600443 T C ADAR Missense_Mutation p.D11G 0.11 possibly_damaging(0.55) TCGA-56-A4ZK-01 1 154600444 154600444 C A ADAR Missense_Mutation p.D11Y 0.12 possibly_damaging(0.866) TCGA-56-A4ZK-01 1 158390095 158390095 C G OR10K2 Missense_Mutation p.A188P 0.45 deleterious(0) probably_damaging(0.993) TCGA-56-A4ZK-01 1 158592893 158592893 G T SPTA1 Missense_Mutation p.H2000Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-56-A4ZK-01 1 160456490 160456490 C A SLAMF6 3'UTR 0.57 TCGA-56-A4ZK-01 1 177937053 177937053 C T SEC16B Missense_Mutation p.D22N 0.15 deleterious(0.05) benign(0.03) TCGA-56-A4ZK-01 1 197564380 197564380 A T DENND1B Silent p.A335A 0.12 TCGA-56-A4ZK-01 1 198701496 198701496 A G PTPRC Missense_Mutation p.N681S 0.24 deleterious(0) probably_damaging(1) TCGA-56-A4ZK-01 1 204125823 204125823 C T REN Nonsense_Mutation p.W267* 0.41 TCGA-56-A4ZK-01 1 21582562 21582562 T A ECE1 Missense_Mutation p.I300F 0.26 deleterious(0) benign(0.228) TCGA-56-A4ZK-01 1 230459038 230459038 A G PGBD5 3'UTR 0.39 TCGA-56-A4ZK-01 1 235582831 235582831 G T TBCE Missense_Mutation p.V139L 0.32 deleterious(0.03) possibly_damaging(0.696) TCGA-56-A4ZK-01 1 247921329 247921329 C A OR1C1 Missense_Mutation p.C127F 0.23 deleterious(0) possibly_damaging(0.502) TCGA-56-A4ZK-01 1 32158215 32158215 C G COL16A1 Missense_Mutation p.G381A 0.38 unknown(0) TCGA-56-A4ZK-01 1 32635560 32635560 C A KPNA6 Missense_Mutation p.A441D 0.40 deleterious(0) probably_damaging(0.999) TCGA-56-A4ZK-01 1 78194221 78194221 T A USP33 Missense_Mutation p.R329S 0.15 deleterious(0.01) benign(0.142) TCGA-56-A4ZK-01 1 78267030 78267030 G A FAM73A Silent p.P70P 0.24 TCGA-56-A4ZK-01 1 87045767 87045767 C G CLCA4 Missense_Mutation p.I833M 0.07 deleterious(0.03) benign(0.269) TCGA-56-A4ZK-01 20 2463887 2463887 C G ZNF343 Missense_Mutation p.E574Q 0.11 deleterious(0.02) probably_damaging(0.993) TCGA-56-A4ZK-01 20 43723405 43723405 C T KCNS1 3'UTR 0.21 TCGA-56-A4ZK-01 20 51871331 51871331 C A TSHZ2 Missense_Mutation p.P445Q 0.20 deleterious(0.03) benign(0.011) TCGA-56-A4ZK-01 20 57767414 57767414 C A ZNF831 Missense_Mutation p.T447N 0.36 deleterious(0) probably_damaging(0.997) TCGA-56-A4ZK-01 20 61981008 61981008 G A CHRNA4 Silent p.F585F 0.20 TCGA-56-A4ZK-01 21 28296637 28296637 A C ADAMTS5 Nonsense_Mutation p.L843* 0.32 TCGA-56-A4ZK-01 21 36081792 36081792 A G CLIC6 Missense_Mutation p.T619A 0.13 deleterious(0) probably_damaging(0.968) TCGA-56-A4ZK-01 21 43867493 43867493 C G UBASH3A 3'UTR 0.30 TCGA-56-A4ZK-01 21 44589386 44589386 C T CRYAA Silent p.S59S 0.23 TCGA-56-A4ZK-01 22 18844762 18844762 C G BCRP7 Intron 0.15 TCGA-56-A4ZK-01 22 23995521 23995521 G A KB-1572G7.2 RNA 0.38 TCGA-56-A4ZK-01 2 101611996 101611996 G A NPAS2 Silent p.R809R 0.28 TCGA-56-A4ZK-01 2 107040760 107040760 A T RGPD3 Missense_Mutation p.N1221K 0.26 tolerated(0.21) benign(0.028) TCGA-56-A4ZK-01 2 141597572 141597572 T C LRP1B Missense_Mutation p.K1733E 0.23 benign(0.292) TCGA-56-A4ZK-01 2 163216014 163216014 G T GCA Missense_Mutation p.R193S 0.24 deleterious(0) probably_damaging(0.935) TCGA-56-A4ZK-01 2 163302757 163302757 C G KCNH7 Missense_Mutation p.R442P 0.31 tolerated(0.23) benign(0.006) TCGA-56-A4ZK-01 2 168114989 168114989 G A XIRP2 3'UTR 0.27 TCGA-56-A4ZK-01 2 172965225 172965225 G C DLX2 3'UTR 0.37 TCGA-56-A4ZK-01 2 175337741 175337741 A T GPR155 Missense_Mutation p.L271Q 0.29 tolerated(0.13) probably_damaging(0.998) TCGA-56-A4ZK-01 2 176945426 176945426 C A EVX2 Silent p.S280S 0.43 TCGA-56-A4ZK-01 2 179579988 179579988 G A TTN Missense_Mutation p.P8642L 0.23 TCGA-56-A4ZK-01 2 179974440 179974440 C T SESTD1 3'UTR 0.25 TCGA-56-A4ZK-01 2 185801888 185801888 T C ZNF804A Missense_Mutation p.W589R 0.23 tolerated(0.1) benign(0.305) TCGA-56-A4ZK-01 2 189929778 189929778 A G COL5A2 Silent p.A523A 0.18 TCGA-56-A4ZK-01 2 191792086 191792086 G T GLS Missense_Mutation p.A435S 0.20 deleterious(0) probably_damaging(0.997) TCGA-56-A4ZK-01 2 196729367 196729367 G C DNAH7 Missense_Mutation p.L2338V 0.25 deleterious(0.01) probably_damaging(1) TCGA-56-A4ZK-01 2 26739356 26739356 G T OTOF Missense_Mutation p.Q147K 0.25 tolerated(0.94) benign(0.086) TCGA-56-A4ZK-01 2 28521325 28521325 G A BRE Missense_Mutation p.R352K 0.23 deleterious(0.01) probably_damaging(0.99) TCGA-56-A4ZK-01 2 49191034 49191034 C A FSHR Missense_Mutation p.G309V 0.24 tolerated(0.33) benign(0.009) TCGA-56-A4ZK-01 2 61633154 61633157 GCTG - USP34 Frame_Shift_Del p.Q80Ffs*10 0.19 TCGA-56-A4ZK-01 2 72362437 72362437 C T CYP26B1 Missense_Mutation p.V181M 0.22 deleterious(0.03) probably_damaging(0.969) TCGA-56-A4ZK-01 2 88913297 88913297 C T EIF2AK3 Nonsense_Mutation p.W128* 0.27 TCGA-56-A4ZK-01 2 89417088 89417088 G A IGKV1-17 Silent p.S32S 0.29 TCGA-56-A4ZK-01 3 108175639 108175639 T A MYH15 Silent p.R724R 0.27 TCGA-56-A4ZK-01 3 108403153 108403153 G A DZIP3 Missense_Mutation p.V992I 0.56 tolerated(0.11) benign(0.006) TCGA-56-A4ZK-01 3 113522453 113522453 A C ATP6V1A Missense_Mutation p.K506N 0.08 deleterious(0) probably_damaging(0.998) TCGA-56-A4ZK-01 3 123333134 123333134 A G MYLK Missense_Mutation p.F1855L 0.50 deleterious(0.04) probably_damaging(0.996) TCGA-56-A4ZK-01 3 124160886 124160886 G C KALRN Missense_Mutation p.G1096A 0.11 tolerated(0.87) benign(0.017) TCGA-56-A4ZK-01 3 142231107 142231107 G C ATR Nonsense_Mutation p.S1616* 0.14 TCGA-56-A4ZK-01 3 15531075 15531075 G A COLQ Missense_Mutation p.P59L 0.38 tolerated_low_confidence(0.09) probably_damaging(0.999) TCGA-56-A4ZK-01 3 157155390 157155390 G T PTX3 Silent p.L73L 0.27 TCGA-56-A4ZK-01 3 17052614 17052614 G T PLCL2 Missense_Mutation p.M466I 0.41 tolerated(0.53) benign(0.015) TCGA-56-A4ZK-01 3 183818258 183818258 C G HTR3E Missense_Mutation p.S33W 0.09 deleterious_low_confidence(0.04) benign(0.001) TCGA-56-A4ZK-01 3 183967107 183967107 C G ALG3 5'Flank 0.41 TCGA-56-A4ZK-01 3 191888386 191888386 G C FGF12 Missense_Mutation p.I158M 0.23 tolerated(0.13) benign(0.147) TCGA-56-A4ZK-01 3 196754700 196754700 C T MFI2 Missense_Mutation p.R44Q 0.16 tolerated(1) benign(0.004) TCGA-56-A4ZK-01 3 2924928 2924928 G T CNTN4 Missense_Mutation p.G251V 0.44 deleterious(0.04) probably_damaging(1) TCGA-56-A4ZK-01 3 44761695 44761695 G T ZNF502 Intron 0.37 TCGA-56-A4ZK-01 3 49055211 49055211 T G DALRD3 Silent p.R185R 0.28 TCGA-56-A4ZK-01 4 110635480 110635480 T A PLA2G12A 3'UTR 0.21 TCGA-56-A4ZK-01 4 122731166 122731166 T - EXOSC9 Frame_Shift_Del p.M217Rfs*6 0.23 TCGA-56-A4ZK-01 4 128595318 128595318 T G INTU Silent p.A377A 0.33 TCGA-56-A4ZK-01 4 134073825 134073825 C T PCDH10 Missense_Mutation p.R844W 0.33 tolerated(0.18) possibly_damaging(0.8) TCGA-56-A4ZK-01 4 166215601 166215601 C G KLHL2 Missense_Mutation p.T216S 0.17 tolerated(0.3) benign(0.395) TCGA-56-A4ZK-01 4 177032792 177032792 G T WDR17 Missense_Mutation p.V45L 0.37 deleterious(0.01) probably_damaging(0.989) TCGA-56-A4ZK-01 4 30725992 30725992 T C PCDH7 Missense_Mutation p.V983A 0.41 tolerated(0.52) benign(0.175) TCGA-56-A4ZK-01 4 57301715 57301715 G C PPAT 5'UTR 0.20 TCGA-56-A4ZK-01 4 71634264 71634264 C G RUFY3 Nonsense_Mutation p.Y194* 0.18 TCGA-56-A4ZK-01 4 78532286 78532286 G C CXCL13 3'UTR 0.09 TCGA-56-A4ZK-01 4 85609304 85609304 A G WDFY3 Missense_Mutation p.S3160P 0.40 tolerated(0.13) benign(0.163) TCGA-56-A4ZK-01 5 13809240 13809240 G A DNAH5 Silent p.T2555T 0.23 TCGA-56-A4ZK-01 5 139919031 139919031 G A ANKHD1 Intron 0.32 TCGA-56-A4ZK-01 5 139947576 139947576 C G SLC35A4 Silent p.G274G 0.33 TCGA-56-A4ZK-01 5 140730032 140730032 G T PCDHGB1 Nonsense_Mutation p.E69* 0.36 TCGA-56-A4ZK-01 5 176815004 176815004 G - SLC34A1 Frame_Shift_Del p.A220Pfs*66 0.29 TCGA-56-A4ZK-01 5 24491731 24491731 G T CDH10 Missense_Mutation p.S610R 0.19 deleterious(0.01) probably_damaging(0.944) TCGA-56-A4ZK-01 5 36679789 36679789 G C SLC1A3 Missense_Mutation p.M307I 0.18 tolerated(0.32) benign(0.006) TCGA-56-A4ZK-01 5 38962436 38962436 T C RICTOR Missense_Mutation p.K566E 0.25 tolerated(0.74) possibly_damaging(0.793) TCGA-56-A4ZK-01 5 41181469 41181469 G T C6 Missense_Mutation p.H307N 0.19 tolerated(0.08) benign(0.175) TCGA-56-A4ZK-01 5 41313694 41313694 T C PLCXD3 3'UTR 0.17 TCGA-56-A4ZK-01 5 42801406 42801406 G A SEPP1 Missense_Mutation p.R188C 0.25 deleterious(0) benign(0.001) TCGA-56-A4ZK-01 5 82940404 82940404 C T HAPLN1 Missense_Mutation p.D185N 0.15 deleterious(0.04) benign(0.366) TCGA-56-A4ZK-01 5 90261303 90261303 C A GPR98 Silent p.V5976V 0.36 TCGA-56-A4ZK-01 5 94207093 94207093 T A MCTP1 Missense_Mutation p.E689V 0.30 tolerated(0.08) probably_damaging(0.999) TCGA-56-A4ZK-01 5 94207094 94207094 C G MCTP1 Missense_Mutation p.E689Q 0.30 deleterious(0.04) probably_damaging(0.998) TCGA-56-A4ZK-01 6 111587667 111587667 G T KIAA1919 Missense_Mutation p.S301I 0.26 tolerated(0.05) possibly_damaging(0.673) TCGA-56-A4ZK-01 6 116879467 116879467 T C FAM26D 3'UTR 0.22 TCGA-56-A4ZK-01 6 123957900 123957900 T A TRDN Missense_Mutation p.E7D 0.09 deleterious_low_confidence(0.02) unknown(0) TCGA-56-A4ZK-01 6 135287503 135287503 G A HBS1L Silent p.Y669Y 0.28 TCGA-56-A4ZK-01 6 152454452 152454452 T A SYNE1 Nonsense_Mutation p.K8654* 0.16 TCGA-56-A4ZK-01 6 152697940 152697940 T A SYNE1 Missense_Mutation p.K3039N 0.27 benign(0.236) TCGA-56-A4ZK-01 6 152697956 152697956 C A SYNE1 Missense_Mutation p.S3034I 0.24 probably_damaging(0.986) TCGA-56-A4ZK-01 6 158535846 158535846 C G SERAC1 Silent p.S553S 0.18 TCGA-56-A4ZK-01 6 160932044 160932044 G C LPAL2 5'Flank 0.15 TCGA-56-A4ZK-01 6 27792148 27792148 C A HIST1H4J Silent p.V82V 0.10 TCGA-56-A4ZK-01 6 29141385 29141385 T A OR2J2 5'UTR 0.10 TCGA-56-A4ZK-01 6 32024421 32024421 G C TNXB Missense_Mutation p.N2695K 0.28 benign(0.229) TCGA-56-A4ZK-01 6 49704186 49704186 G A CRISP3 Missense_Mutation p.T59I 0.28 tolerated(0.26) benign(0.014) TCGA-56-A4ZK-01 6 52269103 52269103 G A PAQR8 3'UTR 0.38 TCGA-56-A4ZK-01 6 6251163 6251163 C A F13A1 Splice_Site p.X191_splice 0.19 TCGA-56-A4ZK-01 6 84375165 84375165 C A SNAP91 Missense_Mutation p.G89V 0.28 deleterious(0) unknown(0) TCGA-56-A4ZK-01 6 84375166 84375166 C T SNAP91 Missense_Mutation p.G89R 0.28 deleterious(0) unknown(0) TCGA-56-A4ZK-01 6 87968625 87968625 G C ZNF292 Missense_Mutation p.E1760Q 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.804) TCGA-56-A4ZK-01 6 88362867 88362867 T C ORC3 Silent p.L472L 0.22 TCGA-56-A4ZK-01 7 100685985 100685985 C A MUC17 Missense_Mutation p.T3763K 0.21 benign(0.01) TCGA-56-A4ZK-01 7 120884306 120884306 T A CPED1 Missense_Mutation p.W742R 0.19 deleterious(0) probably_damaging(0.998) TCGA-56-A4ZK-01 7 123152058 123152058 C A IQUB Missense_Mutation p.D113Y 0.17 tolerated(0.06) benign(0.004) TCGA-56-A4ZK-01 7 137075927 137075927 G C DGKI 3'UTR 0.24 TCGA-56-A4ZK-01 7 143633087 143633087 A T OR2F2 Silent p.T254T 0.21 TCGA-56-A4ZK-01 7 143748073 143748073 G T OR2A5 Missense_Mutation p.W193C 0.27 tolerated(0.1) possibly_damaging(0.617) TCGA-56-A4ZK-01 7 148851282 148851282 C T ZNF398 Silent p.N90N 0.27 TCGA-56-A4ZK-01 7 148979195 148979195 T C ZNF783 Missense_Mutation p.C468R 0.28 deleterious(0) probably_damaging(0.998) TCGA-56-A4ZK-01 7 150389842 150389842 G T GIMAP2 Silent p.L156L 0.09 TCGA-56-A4ZK-01 7 22533446 22533446 T A STEAP1B Missense_Mutation p.T32S 0.26 tolerated_low_confidence(0.7) benign(0.005) TCGA-56-A4ZK-01 7 6210230 6210230 G A CYTH3 Silent p.D253D 0.20 TCGA-56-A4ZK-01 7 75614423 75614423 C T POR Silent p.A432A 0.31 TCGA-56-A4ZK-01 7 76828750 76828750 C A FGL2 Missense_Mutation p.A121S 0.26 tolerated(0.69) benign(0.003) TCGA-56-A4ZK-01 7 82387983 82387983 C A PCLO Missense_Mutation p.G5113C 0.19 unknown(0) TCGA-56-A4ZK-01 8 103573100 103573100 G C ODF1 Missense_Mutation p.K247N 0.20 deleterious_low_confidence(0) benign(0.403) TCGA-56-A4ZK-01 8 110100373 110100373 A G TRHR Missense_Mutation p.Y211C 0.36 deleterious(0) probably_damaging(0.99) TCGA-56-A4ZK-01 8 113318325 113318325 C G CSMD3 Missense_Mutation p.G2661A 0.09 deleterious(0) probably_damaging(0.996) TCGA-56-A4ZK-01 8 116631561 116631561 T A TRPS1 Missense_Mutation p.H255L 0.20 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-56-A4ZK-01 8 125132014 125132014 A C FER1L6 Missense_Mutation p.I1853L 0.34 tolerated(0.34) benign(0.012) TCGA-56-A4ZK-01 8 139263192 139263192 C T FAM135B Missense_Mutation p.R145Q 0.32 tolerated(0.22) benign(0.059) TCGA-56-A4ZK-01 8 139705908 139705908 G T COL22A1 Missense_Mutation p.P912H 0.27 probably_damaging(0.934) TCGA-56-A4ZK-01 8 142432400 142432400 C A PTP4A3 Silent p.L20L 0.16 TCGA-56-A4ZK-01 8 145739434 145739434 G T RECQL4 Missense_Mutation p.R646S 0.21 tolerated(0.29) benign(0.067) TCGA-56-A4ZK-01 8 163665 163665 C T RPL23AP53 RNA 0.32 TCGA-56-A4ZK-01 8 26627800 26627800 G T ADRA1A Silent p.R423R 0.32 TCGA-56-A4ZK-01 8 69136852 69136852 C A PREX2 Missense_Mutation p.S1589Y 0.13 tolerated(0.2) benign(0.259) TCGA-56-A4ZK-01 8 72964954 72964954 A G TRPA1 Missense_Mutation p.V564A 0.06 deleterious(0.01) benign(0.093) TCGA-56-A4ZK-01 8 73993342 73993342 G T SBSPON Missense_Mutation p.N107K 0.12 deleterious(0) probably_damaging(0.954) TCGA-56-A4ZK-01 8 77764723 77764723 A G ZFHX4 Missense_Mutation p.K1856E 0.19 possibly_damaging(0.486) TCGA-56-A4ZK-01 8 77896349 77896349 T A PEX2 Silent p.A22A 0.10 TCGA-56-A4ZK-01 8 87242010 87242010 A G SLC7A13 Missense_Mutation p.L166P 0.21 deleterious(0) probably_damaging(0.934) TCGA-56-A4ZK-01 8 87393063 87393063 C G WWP1 Missense_Mutation p.S60C 0.09 tolerated(0.17) probably_damaging(1) TCGA-56-A4ZK-01 8 87588351 87588351 T C CNGB3 Missense_Mutation p.E704G 0.08 tolerated(0.13) benign(0.079) TCGA-56-A4ZK-01 8 88885422 88885422 T A DCAF4L2 Missense_Mutation p.S260C 0.14 deleterious(0.01) possibly_damaging(0.447) TCGA-56-A4ZK-01 8 89053686 89053686 A G MMP16 3'UTR 0.48 TCGA-56-A4ZK-01 8 92021025 92021025 T A TMEM55A Splice_Site p.X163_splice 0.23 TCGA-56-A4ZK-01 9 103348580 103348580 C A MURC Silent p.L314L 0.13 TCGA-56-A4ZK-01 9 104171535 104171535 G T ZNF189 Silent p.R495R 0.22 TCGA-56-A4ZK-01 9 131038565 131038565 C T SWI5 Silent p.L47L 0.12 TCGA-56-A4ZK-01 9 14842524 14842524 A G FREM1 Missense_Mutation p.F510L 0.19 tolerated(0.05) possibly_damaging(0.831) TCGA-56-A4ZK-01 9 21140844 21140844 A T IFNW1 3'UTR 0.31 TCGA-56-A4ZK-01 9 38396243 38396243 G T ALDH1B1 Missense_Mutation p.Q166H 0.28 deleterious(0.04) benign(0.001) TCGA-56-A4ZK-01 9 74810435 74810435 C A GDA Missense_Mutation p.A48E 0.35 tolerated(0.67) benign(0.173) TCGA-56-A4ZK-01 9 75526943 75526943 A T ALDH1A1 Missense_Mutation p.N377K 0.22 tolerated(0.07) benign(0.004) TCGA-56-A4ZK-01 9 85862576 85862576 T A FRMD3 3'UTR 0.38 TCGA-56-A4ZK-01 9 88618518 88618518 A G NAA35 Missense_Mutation p.S359G 0.12 tolerated(0.1) possibly_damaging(0.606) TCGA-56-A4ZK-01 9 98239928 98239928 G C PTCH1 Silent p.A468A 0.27 TCGA-56-A4ZK-01 X 105011533 105011533 C A IL1RAPL2 Missense_Mutation p.T647K 0.35 deleterious_low_confidence(0.02) benign(0.006) TCGA-56-A4ZK-01 X 133303860 133303860 A G MIR20B RNA 0.35 TCGA-56-A4ZK-01 X 134023168 134023168 C T MOSPD1 3'UTR 0.26 TCGA-56-A4ZK-01 X 134494662 134494663 AT - ZNF449 Frame_Shift_Del p.Y407* 0.29 TCGA-56-A4ZK-01 X 152482226 152482226 T C MAGEA1 Missense_Mutation p.Y262C 0.34 deleterious(0) possibly_damaging(0.652) TCGA-56-A4ZK-01 X 153282505 153282505 G - IRAK1 Frame_Shift_Del p.P308Hfs*45 0.26 TCGA-56-A4ZK-01 X 30269761 30269761 T C MAGEB1 3'UTR 0.32 TCGA-56-A4ZK-01 X 35993977 35993977 G T CXorf22 Missense_Mutation p.W887L 0.10 deleterious(0) probably_damaging(0.999) TCGA-56-A4ZK-01 X 36156114 36156114 A T CHDC2 Missense_Mutation p.K362I 0.23 tolerated(0.08) possibly_damaging(0.759) TCGA-56-A4ZK-01 X 43572027 43572027 A G MAOA Missense_Mutation p.K163E 0.33 tolerated(0.14) benign(0.019) TCGA-56-A4ZK-01 X 56591848 56591848 G T UBQLN2 Silent p.G514G 0.56 TCGA-56-A4ZK-01 X 71416667 71416667 A C PIN4 Missense_Mutation p.K75N 0.28 deleterious(0.02) benign(0.347) TCGA-56-A4ZK-01 X 78216648 78216648 G A P2RY10 Missense_Mutation p.V211M 0.37 deleterious(0.04) benign(0.439) TCGA-56-A5DS-01 10 100189626 100189626 C T HPS1 Silent p.R263R 0.17 TCGA-56-A5DS-01 10 118138916 118138916 G A CCDC172 3'UTR 0.24 TCGA-56-A5DS-01 10 129866399 129866399 G A PTPRE Missense_Mutation p.G286S 0.04 tolerated(0.06) benign(0.008) TCGA-56-A5DS-01 10 135027514 135027514 G T KNDC1 Missense_Mutation p.S1522I 0.09 deleterious(0.01) probably_damaging(0.986) TCGA-56-A5DS-01 10 135107269 135107269 C T TUBGCP2 Silent p.T235T 0.25 TCGA-56-A5DS-01 10 18242279 18242279 A G SLC39A12 Missense_Mutation p.E25G 0.10 tolerated(0.12) benign(0.005) TCGA-56-A5DS-01 10 22856645 22856645 C A PIP4K2A Intron 0.20 TCGA-56-A5DS-01 10 44053415 44053415 G A ZNF239 Missense_Mutation p.S38F 0.08 tolerated(0.55) benign(0.002) TCGA-56-A5DS-01 10 50902744 50902744 C G C10orf53 Intron 0.14 TCGA-56-A5DS-01 10 6528059 6528059 G A PRKCQ Missense_Mutation p.L280F 0.11 tolerated(0.07) possibly_damaging(0.859) TCGA-56-A5DS-01 10 70231586 70231586 C G DNA2 Missense_Mutation p.E98D 0.09 tolerated(0.48) benign(0.011) TCGA-56-A5DS-01 10 75138768 75138768 C T ANXA7 Silent p.L415L 0.21 TCGA-56-A5DS-01 10 75529207 75529207 G C SEC24C Missense_Mutation p.E843Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-56-A5DS-01 11 1017703 1017703 A C MUC6 Missense_Mutation p.S1700A 0.03 unknown(0) TCGA-56-A5DS-01 11 115049467 115049467 G A CADM1 Silent p.I369I 0.12 TCGA-56-A5DS-01 11 117090432 117090432 C T PCSK7 Missense_Mutation p.E400K 0.09 deleterious(0.05) possibly_damaging(0.771) TCGA-56-A5DS-01 11 120008530 120008530 G A TRIM29 Silent p.F70F 0.16 TCGA-56-A5DS-01 11 124189413 124189413 A G OR8D2 Silent p.G227G 0.11 TCGA-56-A5DS-01 11 22398201 22398201 G C SLC17A6 Missense_Mutation p.A466P 0.13 tolerated(0.09) possibly_damaging(0.541) TCGA-56-A5DS-01 11 43419566 43419566 G T TTC17 Missense_Mutation p.A321S 0.20 deleterious(0.04) probably_damaging(0.961) TCGA-56-A5DS-01 11 45827733 45827733 G A SLC35C1 Missense_Mutation p.M127I 0.17 deleterious(0) possibly_damaging(0.766) TCGA-56-A5DS-01 11 56230471 56230471 C A OR5M9 Missense_Mutation p.R136M 0.22 deleterious(0.01) benign(0.39) TCGA-56-A5DS-01 11 56468279 56468280 TG - OR9G1 Frame_Shift_Del p.A141Ifs*13 0.09 TCGA-56-A5DS-01 11 57947792 57947792 G A OR9Q1 Silent p.R292R 0.17 TCGA-56-A5DS-01 11 57982566 57982566 C G OR1S1 Missense_Mutation p.S117C 0.15 deleterious(0.02) benign(0.021) TCGA-56-A5DS-01 11 58034505 58034505 G T OR10W1 Missense_Mutation p.L276I 0.08 deleterious(0) probably_damaging(0.997) TCGA-56-A5DS-01 11 59282922 59282922 C T OR4D9 Silent p.C179C 0.16 TCGA-56-A5DS-01 11 65810538 65810538 C T GAL3ST3 Missense_Mutation p.E246K 0.16 deleterious(0) probably_damaging(0.999) TCGA-56-A5DS-01 11 78380607 78380607 C A TENM4 Silent p.L2261L 0.15 TCGA-56-A5DS-01 11 7949633 7949633 A G OR10A6 Missense_Mutation p.F193L 0.11 tolerated(0.24) benign(0.053) TCGA-56-A5DS-01 11 8414221 8414221 T C STK33 Missense_Mutation p.K461E 0.11 tolerated_low_confidence(0.55) benign(0.007) TCGA-56-A5DS-01 11 8707022 8707022 C G RPL27A Intron 0.13 TCGA-56-A5DS-01 11 87847224 87847224 G A RAB38 Missense_Mutation p.P190S 0.09 tolerated(0.41) benign(0.019) TCGA-56-A5DS-01 11 92534532 92534532 G C FAT3 Missense_Mutation p.A2785P 0.14 probably_damaging(0.994) TCGA-56-A5DS-01 12 100813931 100813931 A G SLC17A8 Missense_Mutation p.I588M 0.32 tolerated_low_confidence(0.24) benign(0.001) TCGA-56-A5DS-01 12 111954055 111954055 G A ATXN2 Silent p.S586S 0.16 TCGA-56-A5DS-01 12 14959374 14959374 G T SMCO3 Missense_Mutation p.Q81K 0.10 tolerated(0.23) benign(0.185) TCGA-56-A5DS-01 12 27181372 27181372 G T MED21 Missense_Mutation p.S138I 0.16 deleterious(0) benign(0.188) TCGA-56-A5DS-01 12 39764051 39764051 C A KIF21A Missense_Mutation p.Q19H 0.14 deleterious(0) probably_damaging(0.999) TCGA-56-A5DS-01 12 53162538 53162538 A C KRT76 Missense_Mutation p.S626A 0.13 tolerated_low_confidence(0.26) unknown(0) TCGA-56-A5DS-01 12 56216398 56216398 T C DNAJC14 Missense_Mutation p.T585A 0.14 deleterious(0.04) probably_damaging(0.978) TCGA-56-A5DS-01 12 72680684 72680684 G A TRHDE Missense_Mutation p.A335T 0.18 tolerated(0.11) benign(0.383) TCGA-56-A5DS-01 12 7548755 7548755 G C CD163L1 Missense_Mutation p.C662W 0.10 deleterious(0) probably_damaging(1) TCGA-56-A5DS-01 12 7559352 7559352 T G CD163L1 Missense_Mutation p.H288P 0.12 tolerated(0.18) benign(0.077) TCGA-56-A5DS-01 12 78362415 78362415 C G NAV3 Missense_Mutation p.R202G 0.12 tolerated(0.36) benign(0.001) TCGA-56-A5DS-01 12 82147880 82147880 C A PPFIA2 Nonsense_Mutation p.E41* 0.17 TCGA-56-A5DS-01 12 95603447 95603447 C G FGD6 Missense_Mutation p.R538T 0.22 tolerated_low_confidence(0.06) benign(0.272) TCGA-56-A5DS-01 12 95603805 95603805 C G FGD6 Missense_Mutation p.D419H 0.20 deleterious_low_confidence(0.03) possibly_damaging(0.77) TCGA-56-A5DS-01 13 109777648 109777648 G A MYO16 Missense_Mutation p.A1220T 0.12 tolerated(0.13) benign(0.003) TCGA-56-A5DS-01 13 25341421 25341421 G T RNF17 Nonsense_Mutation p.E48* 0.11 TCGA-56-A5DS-01 13 36764113 36764114 AG - SOHLH2 Frame_Shift_Del p.L281Sfs*18 0.13 TCGA-56-A5DS-01 13 41706631 41706631 T C KBTBD6 Missense_Mutation p.D6G 0.16 deleterious_low_confidence(0.01) benign(0.119) TCGA-56-A5DS-01 13 52508877 52508877 G T ATP7B 3'UTR 0.10 TCGA-56-A5DS-01 13 98666463 98666463 G C IPO5 Missense_Mutation p.A792P 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-56-A5DS-01 14 103806059 103806059 C T EIF5 Silent p.I330I 0.09 TCGA-56-A5DS-01 14 106471488 106471488 C T IGHV1-3 Missense_Mutation p.V37M 0.30 deleterious(0.03) possibly_damaging(0.606) TCGA-56-A5DS-01 14 20665795 20665795 C A OR11G2 Missense_Mutation p.L101I 0.23 deleterious(0) possibly_damaging(0.601) TCGA-56-A5DS-01 14 22580965 22580965 G A TRAV25 Missense_Mutation p.G103E 0.15 deleterious(0) probably_damaging(0.996) TCGA-56-A5DS-01 14 24108173 24108173 C T DHRS2 Silent p.L34L 0.33 TCGA-56-A5DS-01 14 31099710 31099710 G C SCFD1 Missense_Mutation p.D54H 0.16 deleterious(0) probably_damaging(0.998) TCGA-56-A5DS-01 15 100533315 100533315 C A ADAMTS17 Missense_Mutation p.A963S 0.16 tolerated(0.66) benign(0.01) TCGA-56-A5DS-01 15 25438456 25438456 G C SNORD115-11 3'Flank 0.08 TCGA-56-A5DS-01 15 50271881 50271881 C T ATP8B4 Missense_Mutation p.G323R 0.11 deleterious(0) probably_damaging(1) TCGA-56-A5DS-01 15 63946430 63946430 C T HERC1 Missense_Mutation p.R3393H 0.09 possibly_damaging(0.667) TCGA-56-A5DS-01 15 74631949 74631949 G T CYP11A1 Missense_Mutation p.A379D 0.06 deleterious(0) probably_damaging(1) TCGA-56-A5DS-01 15 90814553 90814553 G T NGRN Missense_Mutation p.D137Y 0.11 deleterious(0) probably_damaging(1) TCGA-56-A5DS-01 16 20996486 20996486 G A DNAH3 Silent p.I2526I 0.13 TCGA-56-A5DS-01 16 2580794 2580794 C T CEMP1 Missense_Mutation p.R94K 0.26 tolerated_low_confidence(0.75) benign(0.14) TCGA-56-A5DS-01 16 2816306 2816306 G C SRRM2 Missense_Mutation p.R1926T 0.06 unknown(0) TCGA-56-A5DS-01 16 354387 354387 C T AXIN1 Missense_Mutation p.E391K 0.14 deleterious(0.03) probably_damaging(0.936) TCGA-56-A5DS-01 16 48175144 48175144 C G ABCC12 Silent p.L132L 0.18 TCGA-56-A5DS-01 16 49672519 49672519 C T ZNF423 Missense_Mutation p.D182N 0.10 deleterious(0.01) probably_damaging(1) TCGA-56-A5DS-01 17 10299928 10299928 G C MYH8 Silent p.V1490V 0.11 TCGA-56-A5DS-01 17 10398373 10398373 C G MYH1 Missense_Mutation p.A1781P 0.18 deleterious(0.01) benign(0.084) TCGA-56-A5DS-01 17 27000426 27000426 G A SUPT6H Missense_Mutation p.D3N 0.12 deleterious_low_confidence(0) unknown(0) TCGA-56-A5DS-01 17 33767952 33767952 C A SLFN13 Nonsense_Mutation p.E786* 0.11 TCGA-56-A5DS-01 17 33767953 33767953 C A SLFN13 Missense_Mutation p.L785F 0.12 tolerated(0.11) benign(0.157) TCGA-56-A5DS-01 17 37618409 37618409 A T CDK12 Missense_Mutation p.S29C 0.10 benign(0.184) TCGA-56-A5DS-01 17 38636957 38636957 G C TNS4 Missense_Mutation p.S579C 0.18 deleterious(0.01) possibly_damaging(0.56) TCGA-56-A5DS-01 17 40997474 40997474 T C AOC2 Silent p.S277S 0.19 TCGA-56-A5DS-01 17 45745694 45745694 G T KPNB1 Missense_Mutation p.R381L 0.25 deleterious(0) possibly_damaging(0.766) TCGA-56-A5DS-01 17 48797144 48797144 C T LUC7L3 Silent p.N17N 0.08 TCGA-56-A5DS-01 17 49713292 49713292 G T CA10 Nonsense_Mutation p.S238* 0.20 TCGA-56-A5DS-01 17 51901804 51901804 G C KIF2B Missense_Mutation p.E470D 0.21 tolerated(0.05) benign(0.252) TCGA-56-A5DS-01 17 5322702 5322702 C A NUP88 Missense_Mutation p.G90V 0.17 tolerated(0.24) benign(0.211) TCGA-56-A5DS-01 17 53499127 53499127 C G MMD 5'UTR 0.15 TCGA-56-A5DS-01 17 61611427 61611427 G A KCNH6 Missense_Mutation p.D286N 0.28 tolerated(0.15) benign(0.004) TCGA-56-A5DS-01 17 62818440 62818440 C A RNU7-115P 3'Flank 0.25 TCGA-56-A5DS-01 17 63198165 63198165 C T RGS9 Missense_Mutation p.S344F 0.21 deleterious(0) probably_damaging(0.984) TCGA-56-A5DS-01 17 73490812 73490812 G A KIAA0195 Missense_Mutation p.V838M 0.09 deleterious(0) probably_damaging(0.999) TCGA-56-A5DS-01 17 7578211 7578211 C A TP53 Missense_Mutation p.R213L 0.13 deleterious(0) probably_damaging(1) TCGA-56-A5DS-01 17 76388575 76388575 G - PGS1 Frame_Shift_Del p.A55Lfs*56 0.24 TCGA-56-A5DS-01 17 8638827 8638827 C G CCDC42 Missense_Mutation p.A199P 0.12 tolerated(0.08) probably_damaging(0.998) TCGA-56-A5DS-01 18 28650730 28650730 T A DSC2 Missense_Mutation p.I738F 0.15 deleterious(0) probably_damaging(0.999) TCGA-56-A5DS-01 18 48573361 48573361 C G SMAD4 5'UTR 0.26 TCGA-56-A5DS-01 18 52895543 52895543 C - TCF4 Frame_Shift_Del p.K746Rfs*39 0.09 TCGA-56-A5DS-01 18 59931269 59931269 A G KIAA1468 Missense_Mutation p.I800V 0.13 tolerated(0.07) benign(0.007) TCGA-56-A5DS-01 18 6961671 6961671 A C LAMA1 Missense_Mutation p.F2514V 0.40 deleterious(0) probably_damaging(1) TCGA-56-A5DS-01 18 7080041 7080041 C A LAMA1 Missense_Mutation p.W93L 0.20 deleterious(0.01) possibly_damaging(0.651) TCGA-56-A5DS-01 18 8069838 8069838 G A PTPRM Silent p.V429V 0.33 TCGA-56-A5DS-01 19 10221409 10221409 C T PPAN Silent p.V356V 0.15 TCGA-56-A5DS-01 19 11034279 11034279 C A YIPF2 Silent p.G242G 0.12 TCGA-56-A5DS-01 19 11793471 11793471 G A ZNF833P RNA 0.09 TCGA-56-A5DS-01 19 12186712 12186712 G C ZNF844 Silent p.G259G 0.12 TCGA-56-A5DS-01 19 2736971 2736971 C G SLC39A3 Intron 0.19 TCGA-56-A5DS-01 19 34832561 34832561 C T KIAA0355 Silent p.S574S 0.14 TCGA-56-A5DS-01 19 36049951 36049951 G T ATP4A Missense_Mutation p.S400Y 0.17 deleterious(0) possibly_damaging(0.869) TCGA-56-A5DS-01 19 40698407 40698407 A T MAP3K10 Missense_Mutation p.I157L 0.16 deleterious(0) probably_damaging(0.987) TCGA-56-A5DS-01 19 52002916 52002916 G T SIGLEC12 Missense_Mutation p.P288H 0.18 deleterious(0) probably_damaging(0.981) TCGA-56-A5DS-01 19 55284926 55284926 G A KIR2DL1 Missense_Mutation p.R71H 0.20 tolerated(1) benign(0.002) TCGA-56-A5DS-01 19 603706 603706 C G HCN2 Silent p.T265T 0.05 TCGA-56-A5DS-01 1 110086392 110086392 G A GPR61 Missense_Mutation p.E250K 0.15 tolerated(0.27) benign(0.229) TCGA-56-A5DS-01 1 111826000 111826000 C A CHIAP2 RNA 0.09 TCGA-56-A5DS-01 1 113126623 113126623 T G ST7L Missense_Mutation p.H276P 0.15 deleterious(0.02) benign(0.006) TCGA-56-A5DS-01 1 117131637 117131637 T C IGSF3 Missense_Mutation p.T727A 0.12 tolerated(0.05) possibly_damaging(0.803) TCGA-56-A5DS-01 1 117690348 117690348 A T VTCN1 Missense_Mutation p.C261S 0.18 tolerated(0.52) benign(0.001) TCGA-56-A5DS-01 1 12919938 12919938 T C PRAMEF2 Silent p.C226C 0.14 TCGA-56-A5DS-01 1 145439590 145439590 C - TXNIP Intron 0.11 TCGA-56-A5DS-01 1 1464688 1464688 G T ATAD3A Missense_Mutation p.A579S 0.33 tolerated(1) benign(0.007) TCGA-56-A5DS-01 1 158435777 158435777 G A OR10K1 Missense_Mutation p.M142I 0.14 tolerated(0.54) benign(0.027) TCGA-56-A5DS-01 1 160267151 160267151 G A COPA Silent p.L758L 0.13 TCGA-56-A5DS-01 1 16535267 16535267 G A ARHGEF19 Missense_Mutation p.R95W 0.07 deleterious_low_confidence(0) possibly_damaging(0.77) TCGA-56-A5DS-01 1 16583119 16583119 T C FBXO42 Missense_Mutation p.Y213C 0.08 deleterious(0) probably_damaging(0.979) TCGA-56-A5DS-01 1 166927237 166927237 G C ILDR2 Missense_Mutation p.Q50E 0.11 deleterious(0) possibly_damaging(0.683) TCGA-56-A5DS-01 1 167365557 167365557 G A POU2F1 Missense_Mutation p.G341E 0.09 deleterious(0) unknown(0) TCGA-56-A5DS-01 1 168260546 168260546 A T TBX19 Missense_Mutation p.S118C 0.14 deleterious(0.03) possibly_damaging(0.855) TCGA-56-A5DS-01 1 168665715 168665715 G A DPT 3'UTR 0.20 TCGA-56-A5DS-01 1 182555441 182555441 T A RNASEL Silent p.G167G 0.10 TCGA-56-A5DS-01 1 198711464 198711464 A G PTPRC Missense_Mutation p.R889G 0.10 deleterious(0) probably_damaging(1) TCGA-56-A5DS-01 1 205493390 205493390 G A CDK18 Missense_Mutation p.D132N 0.20 deleterious(0.03) possibly_damaging(0.781) TCGA-56-A5DS-01 1 211451544 211451544 A T RCOR3 Missense_Mutation p.Q201L 0.17 deleterious(0) probably_damaging(0.948) TCGA-56-A5DS-01 1 223116628 223116628 G C DISP1 Missense_Mutation p.D155H 0.12 tolerated(0.08) possibly_damaging(0.77) TCGA-56-A5DS-01 1 229634050 229634050 C A NUP133 Nonsense_Mutation p.G218* 0.22 TCGA-56-A5DS-01 1 230401106 230401106 G A GALNT2 Missense_Mutation p.G478E 0.13 deleterious(0.02) probably_damaging(1) TCGA-56-A5DS-01 1 23405483 23405483 G A KDM1A Missense_Mutation p.G623E 0.23 deleterious(0) probably_damaging(0.996) TCGA-56-A5DS-01 1 240371963 240371963 A G FMN2 Missense_Mutation p.K1284R 0.11 probably_damaging(0.996) TCGA-56-A5DS-01 1 241094034 241094034 G T RGS7 Missense_Mutation p.P123Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-56-A5DS-01 1 25729093 25729093 G A RHCE Silent p.I160I 0.14 TCGA-56-A5DS-01 1 33795805 33795805 A G PHC2 Missense_Mutation p.V671A 0.05 deleterious(0.01) probably_damaging(0.954) TCGA-56-A5DS-01 1 43785007 43785007 G A TIE1 Silent p.V1008V 0.13 TCGA-56-A5DS-01 1 47607884 47607884 G T CYP4A22 Missense_Mutation p.A163S 0.06 tolerated(0.29) possibly_damaging(0.633) TCGA-56-A5DS-01 1 85564285 85564285 G T WDR63 Nonsense_Mutation p.E475* 0.12 TCGA-56-A5DS-01 20 1286180 1286180 C A SNPH Missense_Mutation p.P323T 0.17 tolerated(0.25) possibly_damaging(0.475) TCGA-56-A5DS-01 21 10910370 10910370 T C TPTE Missense_Mutation p.I462M 0.10 deleterious(0) possibly_damaging(0.56) TCGA-56-A5DS-01 21 31692222 31692222 A G KRTAP26-1 Silent p.T44T 0.14 TCGA-56-A5DS-01 22 22697965 22697965 C A IGLV9-49 Missense_Mutation p.R85S 0.19 deleterious(0.01) benign(0.044) TCGA-56-A5DS-01 22 38212652 38212652 A T GCAT Missense_Mutation p.H422L 0.15 deleterious(0.02) probably_damaging(1) TCGA-56-A5DS-01 22 40760316 40760316 A T ADSL Missense_Mutation p.M380L 0.11 deleterious(0.02) benign(0.198) TCGA-56-A5DS-01 2 130929945 130929945 C - SMPD4 Frame_Shift_Del p.T252Pfs*25 0.11 TCGA-56-A5DS-01 2 152500435 152500435 A C NEB Nonsense_Mutation p.L2618* 0.10 TCGA-56-A5DS-01 2 162273334 162273334 C A TBR1 Missense_Mutation p.S138Y 0.03 deleterious(0.02) probably_damaging(0.962) TCGA-56-A5DS-01 2 170050329 170050329 G A LRP2 Silent p.I2924I 0.18 TCGA-56-A5DS-01 2 178097270 178097270 G A NFE2L2 Silent p.P148P 0.16 TCGA-56-A5DS-01 2 179454319 179454319 G T TTN Silent p.G20711G 0.33 TCGA-56-A5DS-01 2 179742771 179742771 C T CCDC141 Missense_Mutation p.E607K 0.10 tolerated(0.18) possibly_damaging(0.637) TCGA-56-A5DS-01 2 185800874 185800874 A G ZNF804A Missense_Mutation p.R251G 0.18 deleterious(0) probably_damaging(0.966) TCGA-56-A5DS-01 2 185801536 185801536 T C ZNF804A Silent p.N471N 0.05 TCGA-56-A5DS-01 2 209142412 209142412 G T PIKFYVE Missense_Mutation p.G198V 0.23 deleterious(0) probably_damaging(1) TCGA-56-A5DS-01 2 234079761 234079761 G A INPP5D Missense_Mutation p.R639Q 0.08 deleterious(0) probably_damaging(1) TCGA-56-A5DS-01 2 238277545 238277545 C T COL6A3 Missense_Mutation p.E1521K 0.09 probably_damaging(0.965) TCGA-56-A5DS-01 2 239140694 239140694 A G AC016757.3 5'Flank 0.32 TCGA-56-A5DS-01 2 37376239 37376239 G A EIF2AK2 Intron 0.19 TCGA-56-A5DS-01 2 73452042 73452042 A T SMYD5 Missense_Mutation p.N330I 0.10 deleterious(0) probably_damaging(0.999) TCGA-56-A5DS-01 2 73519223 73519223 C A EGR4 Missense_Mutation p.D378Y 0.10 deleterious(0) possibly_damaging(0.629) TCGA-56-A5DS-01 2 77745603 77745603 C G LRRTM4 Missense_Mutation p.K464N 0.08 tolerated(0.1) possibly_damaging(0.859) TCGA-56-A5DS-01 2 79347996 79347996 G T REG1A Missense_Mutation p.Q3H 0.06 tolerated(0.58) benign(0.216) TCGA-56-A5DS-01 2 79347997 79347997 A T REG1A Missense_Mutation p.T4S 0.06 tolerated(0.6) benign(0.002) TCGA-56-A5DS-01 2 85921592 85921592 A G GNLY Silent p.P17P 0.09 TCGA-56-A5DS-01 2 89326774 89326774 G T IGKV3-11 Missense_Mutation p.A80D 0.09 tolerated(1) benign(0.005) TCGA-56-A5DS-01 3 108572843 108572843 T C TRAT1 3'UTR 0.13 TCGA-56-A5DS-01 3 109056383 109056383 G T DPPA4 5'UTR 0.19 TCGA-56-A5DS-01 3 115561323 115561323 C A LSAMP Missense_Mutation p.W251L 0.08 deleterious(0) probably_damaging(1) TCGA-56-A5DS-01 3 115738432 115738432 G A LSAMP Silent p.N148N 0.10 TCGA-56-A5DS-01 3 127800185 127800185 T A RUVBL1 Nonsense_Mutation p.K427* 0.23 TCGA-56-A5DS-01 3 142413360 142413360 A T PLS1 Silent p.G409G 0.30 TCGA-56-A5DS-01 3 147113744 147113744 T A ZIC4 Missense_Mutation p.I245F 0.20 deleterious(0) probably_damaging(0.985) TCGA-56-A5DS-01 3 155199553 155199553 G C PLCH1 Missense_Mutation p.T1429S 0.08 tolerated_low_confidence(0.6) benign(0.002) TCGA-56-A5DS-01 3 160083912 160083912 G A IFT80 Silent p.G156G 0.08 TCGA-56-A5DS-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.26 deleterious(0.04) probably_damaging(0.96) TCGA-56-A5DS-01 3 32483461 32483461 T C CMTM7 Missense_Mutation p.F97L 0.17 tolerated(0.13) benign(0.364) TCGA-56-A5DS-01 3 32483463 32483463 C T CMTM7 Silent p.F97F 0.17 TCGA-56-A5DS-01 3 38052876 38052876 T A PLCD1 Missense_Mutation p.M228L 0.16 tolerated(0.34) benign(0) TCGA-56-A5DS-01 3 52088237 52088237 T C DUSP7 Missense_Mutation p.E224G 0.19 tolerated(0.05) probably_damaging(0.993) TCGA-56-A5DS-01 4 164394269 164394269 G C TKTL2 Missense_Mutation p.C206W 0.13 deleterious(0) possibly_damaging(0.656) TCGA-56-A5DS-01 4 175898235 175898235 G T ADAM29 Missense_Mutation p.C520F 0.19 deleterious(0) probably_damaging(1) TCGA-56-A5DS-01 4 187629461 187629462 AT - FAT1 Frame_Shift_Del p.H507Rfs*6 0.11 TCGA-56-A5DS-01 4 367202 367202 C T ZNF141 Missense_Mutation p.L326F 0.09 tolerated(0.05) probably_damaging(0.992) TCGA-56-A5DS-01 4 47514605 47514605 C T ATP10D Silent p.I16I 0.21 TCGA-56-A5DS-01 4 69512822 69512822 C G UGT2B15 Nonstop_Mutation p.*531Yext*9 0.10 TCGA-56-A5DS-01 5 11346668 11346668 C T CTNND2 Missense_Mutation p.A482T 0.11 tolerated(0.18) benign(0.009) TCGA-56-A5DS-01 5 128301884 128301884 C T SLC27A6 Silent p.F18F 0.17 TCGA-56-A5DS-01 5 128994396 128994396 C A ADAMTS19 Silent p.I791I 0.15 TCGA-56-A5DS-01 5 23527378 23527378 G T PRDM9 Silent p.R727R 0.13 TCGA-56-A5DS-01 5 24488058 24488058 G A CDH10 Missense_Mutation p.T694M 0.08 tolerated(0.2) possibly_damaging(0.447) TCGA-56-A5DS-01 5 33937892 33937892 C A RXFP3 Missense_Mutation p.S349R 0.13 deleterious(0.03) benign(0.068) TCGA-56-A5DS-01 5 45267201 45267201 T A HCN1 Silent p.L591L 0.13 TCGA-56-A5DS-01 5 6748668 6748668 G A PAPD7 Silent p.P267P 0.05 TCGA-56-A5DS-01 5 68412382 68412382 G A SLC30A5 Missense_Mutation p.E412K 0.12 tolerated(0.2) benign(0.254) TCGA-56-A5DS-01 5 71739761 71739761 T C ZNF366 Missense_Mutation p.E686G 0.24 deleterious_low_confidence(0.03) benign(0) TCGA-56-A5DS-01 6 152771836 152771836 C T SYNE1 Missense_Mutation p.E1107K 0.17 benign(0.317) TCGA-56-A5DS-01 6 153042917 153042917 G T MYCT1 Silent p.G79G 0.09 TCGA-56-A5DS-01 6 157528322 157528322 G A ARID1B Missense_Mutation p.C2016Y 0.19 probably_damaging(0.996) TCGA-56-A5DS-01 6 2836232 2836232 A G SERPINB1 Missense_Mutation p.M198T 0.33 deleterious(0) probably_damaging(0.996) TCGA-56-A5DS-01 6 30571428 30571428 C T PPP1R10 Missense_Mutation p.E530K 0.28 tolerated(0.06) possibly_damaging(0.681) TCGA-56-A5DS-01 6 39693123 39693123 C G KIF6 5'UTR 0.03 TCGA-56-A5DS-01 6 43305060 43305060 C G ZNF318 Missense_Mutation p.D2226H 0.11 possibly_damaging(0.734) TCGA-56-A5DS-01 6 51776627 51776627 C A PKHD1 Missense_Mutation p.V2154F 0.08 tolerated(0.05) benign(0.162) TCGA-56-A5DS-01 6 51882217 51882217 A G PKHD1 Missense_Mutation p.L1864P 0.18 deleterious(0) probably_damaging(0.954) TCGA-56-A5DS-01 6 69758104 69758104 C G BAI3 Missense_Mutation p.A712G 0.16 tolerated(0.05) benign(0.038) TCGA-56-A5DS-01 6 89790533 89790533 C G PNRC1 5'UTR 0.18 TCGA-56-A5DS-01 6 93969181 93969181 G T EPHA7 Silent p.T605T 0.15 TCGA-56-A5DS-01 6 96651313 96651313 A C FUT9 Silent p.T94T 0.16 TCGA-56-A5DS-01 7 102574648 102574648 G T LRRC17 Missense_Mutation p.L96F 0.16 deleterious(0) probably_damaging(0.999) TCGA-56-A5DS-01 7 141803111 141803111 G T MGAM Missense_Mutation p.G1790C 0.21 deleterious(0.02) benign(0.227) TCGA-56-A5DS-01 7 143772215 143772215 G C OR2A25 Missense_Mutation p.K301N 0.14 tolerated(0.1) benign(0.411) TCGA-56-A5DS-01 7 156956528 156956528 C T UBE3C Missense_Mutation p.R31C 0.07 deleterious(0) probably_damaging(0.99) TCGA-56-A5DS-01 7 64168177 64168177 G A ZNF107 Missense_Mutation p.E499K 0.16 tolerated(0.51) possibly_damaging(0.747) TCGA-56-A5DS-01 7 89939590 89939590 A T C7orf63 3'UTR 0.31 TCGA-56-A5DS-01 8 113317099 113317099 C T CSMD3 Missense_Mutation p.R2706K 0.31 tolerated(0.25) benign(0.04) TCGA-56-A5DS-01 8 139601636 139601636 G T COL22A1 Missense_Mutation p.P1581T 0.18 unknown(0) TCGA-56-A5DS-01 8 69046430 69046430 G T PREX2 Missense_Mutation p.W1301C 0.10 tolerated(0.06) benign(0) TCGA-56-A5DS-01 9 116053257 116053257 C T PRPF4 Missense_Mutation p.P446S 0.29 deleterious(0.02) probably_damaging(0.995) TCGA-56-A5DS-01 9 116131978 116131978 C G BSPRY Missense_Mutation p.S255R 0.27 tolerated(0.29) benign(0.014) TCGA-56-A5DS-01 9 138012086 138012086 C T OLFM1 3'UTR 0.26 TCGA-56-A5DS-01 9 91692803 91692803 G A SHC3 Silent p.R187R 0.20 TCGA-56-A5DS-01 X 100653086 100653086 C G GLA Missense_Mutation p.G334A 0.16 tolerated(0.58) benign(0) TCGA-56-A5DS-01 X 100656618 100656618 A G GLA Splice_Site p.X183_splice 0.10 TCGA-56-A5DS-01 X 100668400 100668400 G T HNRNPH2 3'UTR 0.19 TCGA-56-A5DS-01 X 111003204 111003204 C T ALG13 Missense_Mutation p.H1131Y 0.15 deleterious(0) benign(0.017) TCGA-56-A5DS-01 X 11316932 11316932 C T AMELX Missense_Mutation p.H151Y 0.17 tolerated(1) unknown(0) TCGA-56-A5DS-01 X 115574930 115574930 G A SLC6A14 Missense_Mutation p.G210R 0.08 tolerated(0.37) benign(0.104) TCGA-56-A5DS-01 X 118694246 118694246 G T CXorf56 Missense_Mutation p.T76N 0.13 tolerated(0.16) benign(0.002) TCGA-56-A5DS-01 X 120008762 120008762 C A CT47B1 Missense_Mutation p.V255L 0.12 tolerated(0.22) unknown(0) TCGA-56-A5DS-01 X 122616712 122616712 T C GRIA3 Silent p.G834G 0.17 TCGA-56-A5DS-01 X 123630927 123630927 C G TENM1 Missense_Mutation p.D1212H 0.17 deleterious(0) probably_damaging(1) TCGA-56-A5DS-01 X 13769470 13769470 C G OFD1 Silent p.L346L 0.06 TCGA-56-A5DS-01 X 142795189 142795189 C A SPANXN2 Missense_Mutation p.E163D 0.14 tolerated(0.12) unknown(0) TCGA-56-A5DS-01 X 146280565 146280565 T G MIR513B RNA 0.13 TCGA-56-A5DS-01 X 147026482 147026482 G A FMR1 Missense_Mutation p.R522K 0.40 tolerated(0.32) benign(0.021) TCGA-56-A5DS-01 X 152226074 152226074 G T PNMA3 Missense_Mutation p.R221L 0.19 deleterious(0.04) benign(0.024) TCGA-56-A5DS-01 X 152226619 152226619 C A PNMA3 Silent p.R403R 0.21 TCGA-56-A5DS-01 X 152814988 152814988 C T ATP2B3 Silent p.L458L 0.15 TCGA-56-A5DS-01 X 153184317 153184317 C T ARHGAP4 Missense_Mutation p.R374H 0.14 deleterious(0) benign(0.066) TCGA-56-A5DS-01 X 15350066 15350066 A T PIGA 5'UTR 0.16 TCGA-56-A5DS-01 X 153689814 153689814 G T PLXNA3 Missense_Mutation p.G324C 0.16 deleterious(0) probably_damaging(1) TCGA-56-A5DS-01 X 153761861 153761861 A G G6PD Missense_Mutation p.L295P 0.07 deleterious(0) probably_damaging(1) TCGA-56-A5DS-01 X 155235111 155235111 C A IL9R Missense_Mutation p.Q250K 0.11 tolerated(0.08) benign(0.373) TCGA-56-A5DS-01 X 18183052 18183052 T C BEND2 3'UTR 0.12 TCGA-56-A5DS-01 X 18221986 18221986 C G BEND2 Missense_Mutation p.W181S 0.19 tolerated(0.2) benign(0.258) TCGA-56-A5DS-01 X 19045357 19045357 G T GPR64 Silent p.V150V 0.14 TCGA-56-A5DS-01 X 19413247 19413247 C G MAP3K15 Missense_Mutation p.V716L 0.16 deleterious(0.04) benign(0.181) TCGA-56-A5DS-01 X 19554542 19554542 G T SH3KBP1 Nonsense_Mutation p.S664* 0.11 TCGA-56-A5DS-01 X 37027002 37027002 C T FAM47C Silent p.D173D 0.13 TCGA-56-A5DS-01 X 47426751 47426751 T C ARAF Silent p.D332D 0.18 TCGA-56-A5DS-01 X 47835682 47835682 C A ZNF182 Nonsense_Mutation p.E602* 0.09 TCGA-56-A5DS-01 X 48826378 48826378 C A KCND1 Missense_Mutation p.G101W 0.15 deleterious(0) probably_damaging(1) TCGA-56-A5DS-01 X 49855120 49855120 T G CLCN5 Missense_Mutation p.S698A 0.10 deleterious(0) probably_damaging(0.997) TCGA-56-A5DS-01 X 54475610 54475610 G C FGD1 Missense_Mutation p.T747S 0.12 deleterious(0.01) probably_damaging(0.973) TCGA-56-A5DS-01 X 54492007 54492007 C A FGD1 Missense_Mutation p.G505C 0.09 deleterious(0) probably_damaging(1) TCGA-56-A5DS-01 X 54496465 54496465 C T FGD1 Missense_Mutation p.R362K 0.25 tolerated(0.13) benign(0.023) TCGA-56-A5DS-01 X 56590827 56590827 A C UBQLN2 Missense_Mutation p.Q174P 0.19 deleterious(0) probably_damaging(0.942) TCGA-56-A5DS-01 X 69623721 69623721 C T KIF4A Missense_Mutation p.S876F 0.19 tolerated(0.09) benign(0.078) TCGA-56-A5DS-01 X 69945155 69945155 T G TEX11 Missense_Mutation p.K309N 0.22 deleterious(0) probably_damaging(0.932) TCGA-56-A5DS-01 X 70612739 70612739 G T TAF1 Silent p.P1002P 0.15 TCGA-56-A5DS-01 X 71792573 71792573 C A HDAC8 Silent p.S13S 0.13 TCGA-56-A5DS-01 X 71887267 71887267 T C PHKA1 Silent p.Q225Q 0.19 TCGA-56-A5DS-01 X 75648188 75648188 G T MAGEE1 5'UTR 0.13 TCGA-56-A5DS-01 X 77912523 77912523 G T ZCCHC5 Silent p.A465A 0.16 TCGA-56-A5DS-01 X 79991522 79991522 A G BRWD3 Silent p.C293C 0.23 TCGA-56-A5DS-01 X 80047400 80047400 C G BRWD3 Missense_Mutation p.G128A 0.15 deleterious(0.03) possibly_damaging(0.795) TCGA-56-A62T-01 10 115350498 115350498 G A NRAP Nonsense_Mutation p.Q1599* 0.42 TCGA-56-A62T-01 10 115350499 115350499 G T NRAP Silent p.S1598S 0.42 TCGA-56-A62T-01 10 125426211 125426211 C A GPR26 Missense_Mutation p.S96R 0.62 deleterious(0.01) probably_damaging(0.991) TCGA-56-A62T-01 10 129902062 129902062 C A MKI67 Missense_Mutation p.G2681V 0.56 deleterious(0.02) possibly_damaging(0.863) TCGA-56-A62T-01 10 22657444 22657444 T A SPAG6 Silent p.A103A 0.65 TCGA-56-A62T-01 10 28343014 28343014 C A MPP7 Missense_Mutation p.V571L 0.58 tolerated(0.1) benign(0.301) TCGA-56-A62T-01 10 32141524 32141524 C A ARHGAP12 Missense_Mutation p.W364L 0.57 deleterious(0) probably_damaging(1) TCGA-56-A62T-01 10 37490253 37490253 G T ANKRD30A Missense_Mutation p.D901Y 0.34 deleterious(0) probably_damaging(0.99) TCGA-56-A62T-01 10 50854574 50854574 G T CHAT Missense_Mutation p.D379Y 0.49 tolerated(0.15) possibly_damaging(0.867) TCGA-56-A62T-01 10 50902015 50902015 C T C10orf53 Intron 0.27 TCGA-56-A62T-01 10 53459180 53459180 T A CSTF2T Missense_Mutation p.S44C 0.37 deleterious(0) probably_damaging(0.991) TCGA-56-A62T-01 10 60549588 60549588 A T BICC1 Silent p.T314T 0.52 TCGA-56-A62T-01 10 63957780 63957780 C A RTKN2 Missense_Mutation p.G573C 0.44 tolerated(0.06) benign(0.293) TCGA-56-A62T-01 10 73558168 73558168 T C CDH23 Missense_Mutation p.F56S 0.54 tolerated(0.16) possibly_damaging(0.609) TCGA-56-A62T-01 10 90521186 90521186 A T LIPN Silent p.T8T 0.17 TCGA-56-A62T-01 10 95163791 95163791 C A MYOF Missense_Mutation p.G278W 0.38 deleterious(0) probably_damaging(1) TCGA-56-A62T-01 10 96748787 96748787 G A CYP2C9 3'UTR 0.41 TCGA-56-A62T-01 11 1019408 1019408 G T MUC6 Silent p.P1299P 0.39 TCGA-56-A62T-01 11 1019409 1019409 G T MUC6 Missense_Mutation p.P1299H 0.38 unknown(0) TCGA-56-A62T-01 11 103005148 103005148 G T DYNC2H1 Missense_Mutation p.Q735H 0.31 benign(0.033) TCGA-56-A62T-01 11 105850421 105850421 C A GRIA4 Silent p.I888I 0.37 TCGA-56-A62T-01 11 105850422 105850422 A G GRIA4 Missense_Mutation p.R889G 0.36 tolerated_low_confidence(0.43) benign(0.001) TCGA-56-A62T-01 11 113140850 113140850 A C NCAM1 Intron 0.41 TCGA-56-A62T-01 11 113780125 113780125 C T HTR3B Missense_Mutation p.T54I 0.15 deleterious(0.03) benign(0.303) TCGA-56-A62T-01 11 116706917 116706917 C G APOA1 Missense_Mutation p.E137D 0.22 tolerated(0.08) benign(0.019) TCGA-56-A62T-01 11 117261586 117261586 G T CEP164 Missense_Mutation p.Q676H 0.33 deleterious(0.02) benign(0.048) TCGA-56-A62T-01 11 118257287 118257287 G C UBE4A Missense_Mutation p.M856I 0.22 deleterious(0.01) possibly_damaging(0.542) TCGA-56-A62T-01 11 124412855 124412855 G T OR8B12 Silent p.G232G 0.38 TCGA-56-A62T-01 11 124763934 124763934 G T ROBO4 Silent p.A442A 0.40 TCGA-56-A62T-01 11 1266028 1266028 C G MUC5B Missense_Mutation p.P2640A 0.37 unknown(0) TCGA-56-A62T-01 11 1269825 1269825 C A MUC5B Silent p.T3905T 0.16 TCGA-56-A62T-01 11 128360391 128360391 C A ETS1 Missense_Mutation p.G99C 0.33 deleterious(0) probably_damaging(0.979) TCGA-56-A62T-01 11 128680367 128680367 C A FLI1 Silent p.I281I 0.44 TCGA-56-A62T-01 11 129992365 129992365 C T APLP2 Silent p.S293S 0.08 TCGA-56-A62T-01 11 133790808 133790808 C T IGSF9B Missense_Mutation p.E938K 0.30 tolerated_low_confidence(0.06) probably_damaging(0.995) TCGA-56-A62T-01 11 134214975 134214975 G T GLB1L2 Missense_Mutation p.R134L 0.11 tolerated(0.05) probably_damaging(0.997) TCGA-56-A62T-01 11 17743028 17743028 C G MYOD1 Missense_Mutation p.N312K 0.28 tolerated(0.21) benign(0.001) TCGA-56-A62T-01 11 20065549 20065549 A T NAV2 Missense_Mutation p.Q1000L 0.13 tolerated(0.55) probably_damaging(0.983) TCGA-56-A62T-01 11 26664860 26664860 C A ANO3 Missense_Mutation p.P803T 0.39 deleterious(0.03) probably_damaging(0.995) TCGA-56-A62T-01 11 32414272 32414272 C T WT1 Missense_Mutation p.D427N 0.42 tolerated_low_confidence(0.07) probably_damaging(0.997) TCGA-56-A62T-01 11 33373201 33373201 C T HIPK3 Missense_Mutation p.S952F 0.19 deleterious(0.01) possibly_damaging(0.878) TCGA-56-A62T-01 11 35250773 35250773 G T CD44 Nonsense_Mutation p.E708* 0.13 TCGA-56-A62T-01 11 45671854 45671854 G T CHST1 Missense_Mutation p.T207K 0.43 deleterious(0) probably_damaging(0.988) TCGA-56-A62T-01 11 46637290 46637290 C T HARBI1 Silent p.V166V 0.14 TCGA-56-A62T-01 11 46747650 46747650 G T F2 Silent p.G267G 0.44 TCGA-56-A62T-01 11 4825401 4825401 G T OR52R1 Silent p.A70A 0.20 TCGA-56-A62T-01 11 4825431 4825431 C T OR52R1 Silent p.E60E 0.56 TCGA-56-A62T-01 11 48347018 48347018 G T OR4C3 Missense_Mutation p.G176W 0.17 deleterious(0) probably_damaging(0.999) TCGA-56-A62T-01 11 48347019 48347019 G T OR4C3 Missense_Mutation p.G176V 0.17 deleterious(0.02) probably_damaging(0.984) TCGA-56-A62T-01 11 4903287 4903287 C A OR51T1 Missense_Mutation p.T80N 0.42 deleterious(0.03) benign(0.009) TCGA-56-A62T-01 11 5364247 5364247 G T OR51B5 Missense_Mutation p.H170N 0.22 tolerated(0.42) benign(0.012) TCGA-56-A62T-01 11 5372975 5372975 C G OR51B6 Missense_Mutation p.L80V 0.18 deleterious(0.01) possibly_damaging(0.578) TCGA-56-A62T-01 11 551666 551666 C T LRRC56 Missense_Mutation p.A271V 0.13 tolerated(0.05) benign(0.08) TCGA-56-A62T-01 11 55322720 55322720 G A OR4C15 Missense_Mutation p.R313Q 0.13 deleterious_low_confidence(0.01) probably_damaging(0.973) TCGA-56-A62T-01 11 55371543 55371543 G A OR4C11 Missense_Mutation p.H103Y 0.28 deleterious(0) probably_damaging(0.973) TCGA-56-A62T-01 11 55419188 55419188 C G OR4S2 Missense_Mutation p.A270G 0.09 deleterious(0) possibly_damaging(0.771) TCGA-56-A62T-01 11 55606339 55606339 G T OR5D16 Missense_Mutation p.G38C 0.21 deleterious(0.03) benign(0.004) TCGA-56-A62T-01 11 55861628 55861628 C G OR8I2 Missense_Mutation p.P282R 0.10 deleterious(0) probably_damaging(1) TCGA-56-A62T-01 11 56113928 56113928 C G OR8K1 Nonsense_Mutation p.Y138* 0.36 TCGA-56-A62T-01 11 56143574 56143574 C A OR8U1 Missense_Mutation p.H159N 0.13 tolerated(0.21) possibly_damaging(0.845) TCGA-56-A62T-01 11 56409168 56409168 A T OR5AP2 Missense_Mutation p.Y250N 0.15 deleterious(0) benign(0.002) TCGA-56-A62T-01 11 56468135 56468135 T A OR9G1 Missense_Mutation p.I91N 0.06 deleterious(0) probably_damaging(0.922) TCGA-56-A62T-01 11 57080637 57080637 C A TNKS1BP1 Missense_Mutation p.A509S 0.30 tolerated(0.1) probably_damaging(0.997) TCGA-56-A62T-01 11 57100122 57100122 C G SSRP1 Missense_Mutation p.D249H 0.33 deleterious(0) probably_damaging(1) TCGA-56-A62T-01 11 57156723 57156723 T C PRG2 Silent p.P42P 0.38 TCGA-56-A62T-01 11 5776406 5776409 GTTG TTT OR52N4 Frame_Shift_Del p.V146Ffs*7 0.26 TCGA-56-A62T-01 11 57947607 57947607 G T OR9Q1 Nonsense_Mutation p.G231* 0.37 TCGA-56-A62T-01 11 57958169 57958169 G T OR9Q2 Silent p.V69V 0.56 TCGA-56-A62T-01 11 58125661 58125661 G T OR5B17 Missense_Mutation p.D294E 0.19 tolerated_low_confidence(1) benign(0.001) TCGA-56-A62T-01 11 58126434 58126434 G T OR5B17 Missense_Mutation p.L37M 0.41 tolerated_low_confidence(0.05) benign(0.175) TCGA-56-A62T-01 11 5969152 5969152 C A OR56A3 Silent p.S192S 0.37 TCGA-56-A62T-01 11 60215142 60215142 G C MS4A5 Missense_Mutation p.M171I 0.33 tolerated(0.13) benign(0.026) TCGA-56-A62T-01 11 66029415 66029415 G T KLC2 Missense_Mutation p.R144L 0.09 deleterious(0.01) possibly_damaging(0.883) TCGA-56-A62T-01 11 66468546 66468546 C T SPTBN2 Silent p.L1008L 0.11 TCGA-56-A62T-01 11 67017980 67017980 G C KDM2A Missense_Mutation p.A827P 0.15 tolerated(0.13) benign(0.261) TCGA-56-A62T-01 11 68701357 68701357 G C IGHMBP2 Missense_Mutation p.D505H 0.33 deleterious(0) probably_damaging(0.943) TCGA-56-A62T-01 11 6891505 6891505 C A OR10A2 Missense_Mutation p.L174M 0.21 deleterious(0.03) probably_damaging(1) TCGA-56-A62T-01 11 7083563 7083563 G T NLRP14 Splice_Site p.X935_splice 0.15 TCGA-56-A62T-01 11 71148898 71148898 C A DHCR7 Missense_Mutation p.W308L 0.26 deleterious(0) probably_damaging(0.925) TCGA-56-A62T-01 11 74799922 74799922 G A OR2AT4 Silent p.G279G 0.07 TCGA-56-A62T-01 11 89935985 89935985 C A CHORDC1 Missense_Mutation p.W283L 0.09 deleterious(0.02) benign(0.315) TCGA-56-A62T-01 11 92573910 92573910 C T FAT3 Silent p.Y3517Y 0.12 TCGA-56-A62T-01 11 92715149 92715149 T C MTNR1B Missense_Mutation p.F254L 0.22 deleterious(0.05) possibly_damaging(0.895) TCGA-56-A62T-01 12 101876597 101876597 G A SPIC Missense_Mutation p.G80R 0.50 tolerated(0.4) possibly_damaging(0.793) TCGA-56-A62T-01 12 10223958 10223958 G T CLEC1A Missense_Mutation p.P273T 0.19 deleterious_low_confidence(0) possibly_damaging(0.879) TCGA-56-A62T-01 12 107208555 107208555 A T RIC8B Missense_Mutation p.I72F 0.17 deleterious(0) probably_damaging(0.999) TCGA-56-A62T-01 12 109505345 109505345 A T USP30 Missense_Mutation p.E131D 0.17 tolerated(0.14) benign(0.03) TCGA-56-A62T-01 12 111087166 111087166 C T HVCN1 3'UTR 0.27 TCGA-56-A62T-01 12 11149716 11149716 C G TAS2R20 Missense_Mutation p.K253N 0.18 tolerated(0.85) benign(0.002) TCGA-56-A62T-01 12 113306391 113306391 C A RPH3A Missense_Mutation p.P201T 0.17 tolerated(0.06) benign(0.005) TCGA-56-A62T-01 12 11420900 11420900 G A PRB3 Missense_Mutation p.R95C 0.15 deleterious(0.02) unknown(0) TCGA-56-A62T-01 12 114261089 114261089 C G RBM19 Missense_Mutation p.E941D 0.15 tolerated(0.91) benign(0.004) TCGA-56-A62T-01 12 114352773 114352773 C G RBM19 Splice_Site p.X853_splice 0.17 TCGA-56-A62T-01 12 11545849 11545849 G C PRB2 Missense_Mutation p.P388R 0.16 deleterious_low_confidence(0.01) unknown(0) TCGA-56-A62T-01 12 118520148 118520148 C A VSIG10 Missense_Mutation p.D150Y 0.41 tolerated(0.08) possibly_damaging(0.863) TCGA-56-A62T-01 12 118823968 118823968 C G SUDS3 Nonsense_Mutation p.Y106* 0.60 TCGA-56-A62T-01 12 125470729 125470729 G T DHX37 Silent p.P63P 0.54 TCGA-56-A62T-01 12 126137080 126137080 G C TMEM132B Missense_Mutation p.V665L 0.25 deleterious(0.02) possibly_damaging(0.693) TCGA-56-A62T-01 12 133226407 133226407 G T POLE Silent p.L1217L 0.13 TCGA-56-A62T-01 12 133733411 133733411 A G ZNF10 Missense_Mutation p.S527G 0.49 deleterious(0.01) benign(0.268) TCGA-56-A62T-01 12 15637121 15637121 C A PTPRO Missense_Mutation p.L97M 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-56-A62T-01 12 1965382 1965382 C A CACNA2D4 Missense_Mutation p.L674F 0.43 tolerated(0.13) possibly_damaging(0.643) TCGA-56-A62T-01 12 1965384 1965384 A G CACNA2D4 Silent p.L674L 0.40 TCGA-56-A62T-01 12 21918666 21918666 C T KCNJ8 Silent p.S422S 0.16 TCGA-56-A62T-01 12 22028661 22028661 C A ABCC9 Splice_Site p.X674_splice 0.61 TCGA-56-A62T-01 12 26572084 26572084 C A ITPR2 Silent p.G2336G 0.41 TCGA-56-A62T-01 12 26572085 26572085 C A ITPR2 Missense_Mutation p.G2336V 0.42 deleterious(0) probably_damaging(0.943) TCGA-56-A62T-01 12 301654 301654 G T SLC6A12 Missense_Mutation p.P564H 0.48 deleterious(0.02) benign(0.309) TCGA-56-A62T-01 12 32135071 32135071 A T KIAA1551 Silent p.V394V 0.20 TCGA-56-A62T-01 12 32793449 32793449 G T FGD4 Missense_Mutation p.K761N 0.55 deleterious_low_confidence(0.01) benign(0.063) TCGA-56-A62T-01 12 41967117 41967117 C A PDZRN4 Missense_Mutation p.H846N 0.23 deleterious(0.02) probably_damaging(0.991) TCGA-56-A62T-01 12 43847848 43847848 C A ADAMTS20 Missense_Mutation p.R541L 0.26 tolerated(0.11) benign(0.022) TCGA-56-A62T-01 12 49226348 49226348 C A DDX23 Missense_Mutation p.M604I 0.13 deleterious(0.02) possibly_damaging(0.481) TCGA-56-A62T-01 12 49412533 49412533 C G PRKAG1 5'UTR 0.78 TCGA-56-A62T-01 12 49445089 49445089 C A KMT2D Nonsense_Mutation p.E793* 0.50 TCGA-56-A62T-01 12 54062990 54062990 C T ATP5G2 Missense_Mutation p.A142T 0.19 deleterious(0.04) benign(0.445) TCGA-56-A62T-01 12 54379414 54379414 C T HOXC10 Missense_Mutation p.P124L 0.61 tolerated(0.1) benign(0.065) TCGA-56-A62T-01 12 54976530 54976530 G T PPP1R1A Missense_Mutation p.T78K 0.12 deleterious(0.05) probably_damaging(0.99) TCGA-56-A62T-01 12 55354985 55354985 G A TESPA1 Missense_Mutation p.H512Y 0.09 tolerated_low_confidence(0.09) benign(0) TCGA-56-A62T-01 12 55846071 55846071 T A OR6C2 Missense_Mutation p.L25H 0.16 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-56-A62T-01 12 57599259 57599259 G A LRP1 Missense_Mutation p.G3821R 0.24 benign(0.002) TCGA-56-A62T-01 12 63541339 63541339 C A AVPR1A Missense_Mutation p.G353C 0.22 deleterious(0) probably_damaging(0.996) TCGA-56-A62T-01 12 63544099 63544099 G C AVPR1A Missense_Mutation p.A173G 0.14 tolerated(0.16) benign(0.02) TCGA-56-A62T-01 12 65857025 65857025 C G MSRB3 Missense_Mutation p.P168A 0.11 tolerated(0.07) benign(0.017) TCGA-56-A62T-01 12 69986773 69986773 A C CCT2 Silent p.V256V 0.49 TCGA-56-A62T-01 12 72425548 72425548 C T TPH2 3'UTR 0.49 TCGA-56-A62T-01 12 7818474 7818474 T A APOBEC1 5'UTR 0.17 TCGA-56-A62T-01 12 78574773 78574773 G A NAV3 Silent p.Q1858Q 0.13 TCGA-56-A62T-01 12 7899937 7899937 G T CLEC4C Missense_Mutation p.P3H 0.17 tolerated(0.13) probably_damaging(0.99) TCGA-56-A62T-01 12 8330024 8330024 C G ZNF705A Missense_Mutation p.H250D 0.43 deleterious(0) possibly_damaging(0.547) TCGA-56-A62T-01 12 86377320 86377320 G T MGAT4C Silent p.A92A 0.46 TCGA-56-A62T-01 12 97339607 97339607 G A NEDD1 Silent p.Q604Q 0.12 TCGA-56-A62T-01 12 99194869 99194869 C A ANKS1B Missense_Mutation p.R1034L 0.34 deleterious(0.01) possibly_damaging(0.558) TCGA-56-A62T-01 13 24871819 24871819 T G SPATA13 Missense_Mutation p.W1177G 0.21 deleterious(0) probably_damaging(1) TCGA-56-A62T-01 13 31338154 31338154 T A ALOX5AP Missense_Mutation p.Y133N 0.24 tolerated(0.14) possibly_damaging(0.758) TCGA-56-A62T-01 13 32835775 32835775 A T FRY Missense_Mutation p.N2480I 0.21 deleterious(0) probably_damaging(0.999) TCGA-56-A62T-01 13 33704011 33704011 C T STARD13 Missense_Mutation p.G268E 0.21 tolerated(1) benign(0.017) TCGA-56-A62T-01 13 38158115 38158115 C G POSTN Missense_Mutation p.A412P 0.20 deleterious(0) probably_damaging(1) TCGA-56-A62T-01 13 46276584 46276584 C A SPERT Missense_Mutation p.T20N 0.21 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-56-A62T-01 13 60566221 60566221 C A DIAPH3 Missense_Mutation p.D409Y 0.17 deleterious(0) possibly_damaging(0.851) TCGA-56-A62T-01 13 84454379 84454379 G C SLITRK1 Missense_Mutation p.L422V 0.25 deleterious(0) probably_damaging(0.958) TCGA-56-A62T-01 13 95230991 95230991 T A TGDS Missense_Mutation p.R218W 0.22 deleterious(0) possibly_damaging(0.907) TCGA-56-A62T-01 14 105412401 105412401 C A AHNAK2 Silent p.L3129L 0.41 TCGA-56-A62T-01 14 105418118 105418118 C T AHNAK2 Missense_Mutation p.A1224T 0.33 probably_damaging(0.982) TCGA-56-A62T-01 14 106321808 106321808 C A IGHM Silent p.R142R 0.42 TCGA-56-A62T-01 14 106494405 106494405 C G IGHV2-5 Silent p.T29T 0.20 TCGA-56-A62T-01 14 19553804 19553804 G A POTEG Missense_Mutation p.E130K 0.11 deleterious(0.04) possibly_damaging(0.776) TCGA-56-A62T-01 14 20404551 20404551 C A OR4K1 Silent p.A242A 0.47 TCGA-56-A62T-01 14 23444066 23444066 T A AJUBA Missense_Mutation p.Q468H 0.39 deleterious(0.02) benign(0.228) TCGA-56-A62T-01 14 23745088 23745088 T C HOMEZ Missense_Mutation p.E450G 0.09 tolerated(0.12) benign(0.37) TCGA-56-A62T-01 14 45623965 45623965 G C FANCM Missense_Mutation p.E417Q 0.24 tolerated(0.06) benign(0.017) TCGA-56-A62T-01 14 47324229 47324229 G A MDGA2 Nonsense_Mutation p.Q961* 0.14 TCGA-56-A62T-01 14 47530463 47530463 G A MDGA2 Missense_Mutation p.S505F 0.25 deleterious(0.02) probably_damaging(0.988) TCGA-56-A62T-01 14 51224101 51224101 C G NIN Missense_Mutation p.R1216P 0.41 deleterious(0.04) probably_damaging(0.993) TCGA-56-A62T-01 14 58697189 58697189 C G ACTR10 Silent p.S287S 0.25 TCGA-56-A62T-01 14 64450477 64450478 - A SYNE2 Frame_Shift_Ins p.Q678Tfs*7 0.12 TCGA-56-A62T-01 14 64591893 64591893 G A SYNE2 Missense_Mutation p.D4507N 0.37 probably_damaging(0.928) TCGA-56-A62T-01 14 67768107 67768107 T C MPP5 Missense_Mutation p.V193A 0.27 deleterious(0.03) possibly_damaging(0.832) TCGA-56-A62T-01 14 68248241 68248241 C T ZFYVE26 Missense_Mutation p.E1460K 0.38 tolerated(0.2) benign(0.049) TCGA-56-A62T-01 14 70925636 70925636 C A ADAM21 Missense_Mutation p.P474T 0.58 deleterious(0) probably_damaging(0.998) TCGA-56-A62T-01 14 73735409 73735409 C T PAPLN Silent p.T1188T 0.17 TCGA-56-A62T-01 14 77275462 77275462 T C ANGEL1 Missense_Mutation p.I197V 0.24 tolerated(0.63) benign(0) TCGA-56-A62T-01 14 80677811 80677811 C T DIO2 Missense_Mutation p.G2D 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-56-A62T-01 14 88658698 88658698 C A KCNK10 Missense_Mutation p.L246F 0.38 deleterious(0) possibly_damaging(0.908) TCGA-56-A62T-01 14 89878483 89878483 C A FOXN3 Missense_Mutation p.C113F 0.12 deleterious(0.04) possibly_damaging(0.62) TCGA-56-A62T-01 14 90754660 90754660 A C NRDE2 Missense_Mutation p.F1020C 0.40 deleterious(0) probably_damaging(0.993) TCGA-56-A62T-01 14 91633663 91633663 G T C14orf159 Silent p.L66L 0.43 TCGA-56-A62T-01 14 94413760 94413760 G A ASB2 Silent p.D329D 0.19 TCGA-56-A62T-01 15 22369155 22369155 C G OR4M2 Missense_Mutation p.P194A 0.15 tolerated(0.26) benign(0.002) TCGA-56-A62T-01 15 24921551 24921551 C A NPAP1 Silent p.P179P 0.50 TCGA-56-A62T-01 15 25488655 25488655 C A SNORD115-40 5'Flank 0.56 TCGA-56-A62T-01 15 33822854 33822854 C A RYR3 Missense_Mutation p.S114Y 0.39 probably_damaging(1) TCGA-56-A62T-01 15 40268939 40268939 G A EIF2AK4 Missense_Mutation p.G715S 0.53 tolerated(0.39) benign(0.001) TCGA-56-A62T-01 15 40324973 40324973 G T EIF2AK4 Nonsense_Mutation p.E1582* 0.53 TCGA-56-A62T-01 15 42114174 42114174 T A MAPKBP1 Missense_Mutation p.V972E 0.60 deleterious(0) probably_damaging(0.939) TCGA-56-A62T-01 15 42479562 42479562 C A VPS39 Splice_Site p.X148_splice 0.69 TCGA-56-A62T-01 15 63112752 63112761 ATCCATCGAA - TLN2 Frame_Shift_Del p.S2316Lfs*6 0.69 TCGA-56-A62T-01 15 65369213 65369213 C T KBTBD13 Silent p.A20A 0.44 TCGA-56-A62T-01 15 65559010 65559010 T A PARP16 Nonsense_Mutation p.K137* 0.59 TCGA-56-A62T-01 15 65676517 65676517 C A IGDCC4 Missense_Mutation p.D1195Y 0.64 deleterious_low_confidence(0) possibly_damaging(0.905) TCGA-56-A62T-01 15 79088988 79088988 C A ADAMTS7 Missense_Mutation p.V255L 0.56 deleterious(0) probably_damaging(0.951) TCGA-56-A62T-01 16 12061496 12061496 C T TNFRSF17 Missense_Mutation p.P116L 0.24 deleterious(0.01) benign(0.013) TCGA-56-A62T-01 16 2048585 2048585 C T ZNF598 Missense_Mutation p.G788D 0.62 probably_damaging(1) TCGA-56-A62T-01 16 2327920 2327920 C T ABCA3 Silent p.A1623A 0.09 TCGA-56-A62T-01 16 24573176 24573176 A G RBBP6 Missense_Mutation p.Y328C 0.78 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-56-A62T-01 16 30018260 30018260 C A DOC2A Missense_Mutation p.A242S 0.59 tolerated(0.58) benign(0.002) TCGA-56-A62T-01 16 31105661 31105661 G C VKORC1 Intron 0.67 TCGA-56-A62T-01 16 31105663 31105663 A T VKORC1 Intron 0.67 TCGA-56-A62T-01 16 31202724 31202724 G T FUS Nonsense_Mutation p.E516* 0.73 TCGA-56-A62T-01 16 31202725 31202725 A C FUS Missense_Mutation p.E516A 0.75 deleterious_low_confidence(0.02) possibly_damaging(0.636) TCGA-56-A62T-01 16 3139612 3139612 C T ZSCAN10 Missense_Mutation p.C553Y 0.70 deleterious(0) probably_damaging(1) TCGA-56-A62T-01 16 339456 339456 T A AXIN1 Nonsense_Mutation p.K816* 0.10 TCGA-56-A62T-01 16 57717898 57717898 G - GPR97 Frame_Shift_Del p.G313Vfs*7 0.43 TCGA-56-A62T-01 16 57994386 57994386 C A CNGB1 Missense_Mutation p.A195S 0.74 tolerated_low_confidence(0.37) benign(0.007) TCGA-56-A62T-01 16 83636108 83636108 C A CDH13 Missense_Mutation p.A384D 0.69 tolerated(0.06) possibly_damaging(0.69) TCGA-56-A62T-01 17 10363553 10363553 A T MYH4 Missense_Mutation p.N411K 0.60 deleterious(0) probably_damaging(1) TCGA-56-A62T-01 17 11659960 11659960 C T DNAH9 Missense_Mutation p.R2272C 0.18 benign(0.077) TCGA-56-A62T-01 17 12666588 12666588 G A MYOCD Missense_Mutation p.S863N 0.18 tolerated(0.53) probably_damaging(0.998) TCGA-56-A62T-01 17 1538010 1538010 G T SCARF1 3'UTR 0.68 TCGA-56-A62T-01 17 18881896 18881896 G A FAM83G Silent p.A361A 0.52 TCGA-56-A62T-01 17 19319276 19319276 G C RNF112 Missense_Mutation p.A562P 0.63 deleterious(0.01) unknown(0) TCGA-56-A62T-01 17 20799286 20799286 C T CCDC144NL Silent p.P16P 0.35 TCGA-56-A62T-01 17 32953457 32953457 C G TMEM132E Missense_Mutation p.R127G 0.89 deleterious(0) probably_damaging(0.999) TCGA-56-A62T-01 17 32953603 32953603 A G TMEM132E Silent p.E175E 0.71 TCGA-56-A62T-01 17 32964957 32964957 C A TMEM132E Silent p.T887T 0.21 TCGA-56-A62T-01 17 35640258 35640258 T G ACACA Missense_Mutation p.I174L 0.61 deleterious(0) possibly_damaging(0.902) TCGA-56-A62T-01 17 3765516 3765516 C A CAMKK1 3'Flank 0.43 TCGA-56-A62T-01 17 3765517 3765517 C T CAMKK1 3'Flank 0.43 TCGA-56-A62T-01 17 39240644 39240644 C A KRTAP4-7 Silent p.P62P 0.19 TCGA-56-A62T-01 17 40652916 40652916 G A ATP6V0A1 Missense_Mutation p.G631D 0.70 tolerated(0.65) benign(0.005) TCGA-56-A62T-01 17 41958189 41958189 C A MPP2 Missense_Mutation p.E340D 0.53 deleterious(0) probably_damaging(0.996) TCGA-56-A62T-01 17 48753942 48753942 T C ABCC3 Missense_Mutation p.L1124S 0.59 deleterious(0.03) benign(0.038) TCGA-56-A62T-01 17 57043192 57043192 C G PPM1E Missense_Mutation p.R241G 0.56 deleterious(0) probably_damaging(1) TCGA-56-A62T-01 17 62021209 62021209 A G SCN4A Missense_Mutation p.L1305S 0.06 deleterious(0.02) benign(0.147) TCGA-56-A62T-01 17 62028873 62028873 T C SCN4A Missense_Mutation p.I922V 0.49 tolerated(1) benign(0.02) TCGA-56-A62T-01 17 67099002 67099002 C T ABCA6 Missense_Mutation p.A950T 0.14 deleterious(0) probably_damaging(0.955) TCGA-56-A62T-01 17 71228392 71228392 C A FAM104A Missense_Mutation p.E18D 0.60 deleterious_low_confidence(0.01) possibly_damaging(0.45) TCGA-56-A62T-01 17 7245358 7245358 G A ACAP1 Missense_Mutation p.R68H 0.19 tolerated(0.32) benign(0) TCGA-56-A62T-01 17 7407013 7407013 C T POLR2A Missense_Mutation p.T1048M 0.62 possibly_damaging(0.603) TCGA-56-A62T-01 17 7578470 7578471 - G TP53 Frame_Shift_Ins p.G154Rfs*27 0.42 TCGA-56-A62T-01 17 76094535 76094535 G T TNRC6C Missense_Mutation p.R1509M 0.60 deleterious(0) probably_damaging(0.999) TCGA-56-A62T-01 17 7978983 7978983 C T ALOX12B Silent p.E528E 0.66 TCGA-56-A62T-01 18 13099551 13099551 A G CEP192 Missense_Mutation p.I2212V 0.68 tolerated(0.15) benign(0.205) TCGA-56-A62T-01 18 24496692 24496692 G C CHST9 Nonsense_Mutation p.S288* 0.11 TCGA-56-A62T-01 18 321696 321696 G T COLEC12 Silent p.V725V 0.64 TCGA-56-A62T-01 18 34408748 34408749 CG - TPGS2 5'UTR 0.37 TCGA-56-A62T-01 18 46197064 46197064 T C CTIF Silent p.D152D 0.69 TCGA-56-A62T-01 18 47404185 47404185 G A MYO5B Missense_Mutation p.S1115F 0.54 deleterious(0) probably_damaging(0.999) TCGA-56-A62T-01 18 47500979 47500979 C A MYO5B Missense_Mutation p.D355Y 0.55 deleterious(0) probably_damaging(1) TCGA-56-A62T-01 18 56008358 56008358 A G NEDD4L Missense_Mutation p.N405S 0.38 deleterious(0) possibly_damaging(0.834) TCGA-56-A62T-01 19 10469908 10469908 C A TYK2 Silent p.V706V 0.70 TCGA-56-A62T-01 19 10600377 10600377 T A KEAP1 Missense_Mutation p.E493V 0.55 deleterious(0.02) possibly_damaging(0.793) TCGA-56-A62T-01 19 13035057 13035057 G A FARSA Silent p.V432V 0.06 TCGA-56-A62T-01 19 15065098 15065098 G T SLC1A6 Missense_Mutation p.L405M 0.46 tolerated(0.19) probably_damaging(0.998) TCGA-56-A62T-01 19 15565216 15565216 C T RASAL3 Missense_Mutation p.V706I 0.54 tolerated(0.25) benign(0.065) TCGA-56-A62T-01 19 18368917 18368917 C A KIAA1683 Splice_Site p.X1060_splice 0.33 TCGA-56-A62T-01 19 22362824 22362824 T A ZNF676 Missense_Mutation p.E565D 0.20 deleterious(0.04) probably_damaging(0.922) TCGA-56-A62T-01 19 23926628 23926628 G A ZNF681 Missense_Mutation p.S575L 0.20 deleterious(0.02) possibly_damaging(0.587) TCGA-56-A62T-01 19 24310018 24310018 T G ZNF254 Missense_Mutation p.Y406D 0.15 deleterious(0) possibly_damaging(0.824) TCGA-56-A62T-01 19 33701719 33701719 G T SLC7A10 Missense_Mutation p.L368I 0.08 deleterious(0.04) probably_damaging(0.919) TCGA-56-A62T-01 19 35232285 35232285 G T ZNF181 Silent p.V333V 0.27 TCGA-56-A62T-01 19 36205716 36205716 G A ZBTB32 Missense_Mutation p.G63E 0.23 tolerated(0.18) probably_damaging(0.972) TCGA-56-A62T-01 19 36431144 36431144 G T LRFN3 Missense_Mutation p.A273S 0.55 deleterious(0) possibly_damaging(0.901) TCGA-56-A62T-01 19 37646772 37646772 C G CTC-454I21.3 Missense_Mutation p.C84S 0.49 tolerated(0.07) probably_damaging(0.996) TCGA-56-A62T-01 19 40827959 40827959 C T C19orf47 Missense_Mutation p.D367N 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-56-A62T-01 19 45774889 45774889 G T MARK4 Missense_Mutation p.V237L 0.34 deleterious(0) possibly_damaging(0.591) TCGA-56-A62T-01 19 51207377 51207377 C A SHANK1 Missense_Mutation p.V408L 0.36 probably_damaging(0.994) TCGA-56-A62T-01 19 51219980 51219980 T A SHANK1 Missense_Mutation p.D66V 0.17 probably_damaging(0.962) TCGA-56-A62T-01 19 51512527 51512527 C T KLK9 Missense_Mutation p.A38T 0.36 tolerated(0.38) possibly_damaging(0.515) TCGA-56-A62T-01 19 52034514 52034514 T A SIGLEC6 Missense_Mutation p.R109S 0.36 deleterious(0.01) probably_damaging(0.979) TCGA-56-A62T-01 19 52149109 52149109 G A SIGLEC14 Missense_Mutation p.T209I 0.39 deleterious(0) probably_damaging(0.997) TCGA-56-A62T-01 19 54784366 54784366 C A LILRB2 5'UTR 0.16 TCGA-56-A62T-01 19 55708067 55708067 C A PTPRH Nonsense_Mutation p.E694* 0.29 TCGA-56-A62T-01 19 56466960 56466961 - T NLRP8 Frame_Shift_Ins p.A515Cfs*69 0.35 TCGA-56-A62T-01 19 5831845 5831845 G T FUT6 Missense_Mutation p.A245D 0.45 deleterious(0) probably_damaging(0.999) TCGA-56-A62T-01 19 5832294 5832294 G T FUT6 Missense_Mutation p.D95E 0.56 deleterious(0) benign(0.217) TCGA-56-A62T-01 19 6416843 6416843 T A KHSRP Silent p.R411R 0.50 TCGA-56-A62T-01 19 8994423 8994423 C A MUC16 Missense_Mutation p.Q13823H 0.57 probably_damaging(0.999) TCGA-56-A62T-01 19 8999562 8999562 G C MUC16 Missense_Mutation p.P13538R 0.34 probably_damaging(0.999) TCGA-56-A62T-01 19 9061954 9061954 C A MUC16 Nonsense_Mutation p.E8498* 0.56 TCGA-56-A62T-01 19 9068449 9068449 C A MUC16 Missense_Mutation p.V6333F 0.52 unknown(0) TCGA-56-A62T-01 1 100155356 100155356 G - PALMD Frame_Shift_Del p.G514Afs*23 0.23 TCGA-56-A62T-01 1 103440415 103440415 C A COL11A1 Missense_Mutation p.V927F 0.34 unknown(0) TCGA-56-A62T-01 1 10510267 10510267 A T CORT 5'UTR 0.17 TCGA-56-A62T-01 1 109365934 109365934 C T AKNAD1 Intron 0.32 TCGA-56-A62T-01 1 111494511 111494511 A G LRIF1 Missense_Mutation p.I332T 0.38 tolerated(0.24) benign(0.003) TCGA-56-A62T-01 1 115316850 115316850 C A SIKE1 3'UTR 0.23 TCGA-56-A62T-01 1 120461118 120461118 G A NOTCH2 Missense_Mutation p.P1947L 0.23 deleterious(0) probably_damaging(1) TCGA-56-A62T-01 1 1387775 1387775 C A ATAD3C Missense_Mutation p.F61L 0.30 tolerated(0.63) benign(0.12) TCGA-56-A62T-01 1 144865924 144865924 T A PDE4DIP Missense_Mutation p.T1886S 0.10 tolerated(0.27) benign(0.014) TCGA-56-A62T-01 1 145116037 145116037 G T SEC22B RNA 0.36 TCGA-56-A62T-01 1 152275717 152275717 G T FLG Missense_Mutation p.S3882Y 0.46 unknown(0) TCGA-56-A62T-01 1 152329989 152329989 T A FLG2 Missense_Mutation p.K91N 0.23 unknown(0) TCGA-56-A62T-01 1 152800174 152800174 A T LCE1A Missense_Mutation p.R76W 0.54 deleterious_low_confidence(0) unknown(0) TCGA-56-A62T-01 1 154318920 154318920 G T ATP8B2 Missense_Mutation p.A1031S 0.23 tolerated(0.14) probably_damaging(0.995) TCGA-56-A62T-01 1 155735947 155735947 G T GON4L Missense_Mutation p.A1106D 0.42 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-56-A62T-01 1 157803080 157803080 C A CD5L Missense_Mutation p.R314L 0.15 tolerated(0.23) benign(0.209) TCGA-56-A62T-01 1 158389892 158389892 G - OR10K2 Frame_Shift_Del p.S256Pfs*5 0.33 TCGA-56-A62T-01 1 158589086 158589086 C A SPTA1 Missense_Mutation p.Q2152H 0.38 deleterious(0) probably_damaging(0.998) TCGA-56-A62T-01 1 158655039 158655039 C A SPTA1 Silent p.R41R 0.20 TCGA-56-A62T-01 1 158911955 158911955 C A PYHIN1 Missense_Mutation p.N256K 0.14 deleterious(0) probably_damaging(0.973) TCGA-56-A62T-01 1 160535314 160535314 G T CD84 Missense_Mutation p.P90T 0.20 tolerated(0.05) benign(0.006) TCGA-56-A62T-01 1 161722901 161722901 C T DUSP12 Silent p.H237H 0.39 TCGA-56-A62T-01 1 171756973 171756973 A T METTL13 Missense_Mutation p.Q404H 0.29 deleterious(0.02) benign(0.017) TCGA-56-A62T-01 1 174418390 174418390 T C GPR52 3'UTR 0.52 TCGA-56-A62T-01 1 176525417 176525417 C T PAPPA2 5'UTR 0.23 TCGA-56-A62T-01 1 178414710 178414710 T - RASAL2 Frame_Shift_Del p.L514* 0.20 TCGA-56-A62T-01 1 179533823 179533823 A T NPHS2 Splice_Site p.X126_splice 0.32 TCGA-56-A62T-01 1 179533824 179533824 C T NPHS2 Splice_Site p.X126_splice 0.30 TCGA-56-A62T-01 1 182852482 182852482 C T DHX9 Silent p.P1041P 0.19 TCGA-56-A62T-01 1 182993138 182993138 A T LAMC1 Missense_Mutation p.Q96L 0.42 deleterious(0.02) possibly_damaging(0.596) TCGA-56-A62T-01 1 192548374 192548374 G A RGS1 Silent p.K184K 0.18 TCGA-56-A62T-01 1 202777245 202777245 C A KDM5B Missense_Mutation p.K63N 0.41 deleterious(0) possibly_damaging(0.745) TCGA-56-A62T-01 1 204957878 204957878 C A NFASC Missense_Mutation p.T904K 0.09 deleterious(0.05) probably_damaging(0.975) TCGA-56-A62T-01 1 206225318 206225318 G C AVPR1B Missense_Mutation p.C293S 0.40 deleterious(0) probably_damaging(1) TCGA-56-A62T-01 1 210412842 210412842 A C SERTAD4 Silent p.S60S 0.14 TCGA-56-A62T-01 1 211280696 211280696 C G KCNH1 Missense_Mutation p.A35P 0.15 deleterious(0) probably_damaging(1) TCGA-56-A62T-01 1 212800049 212800049 G T FAM71A 3'UTR 0.22 TCGA-56-A62T-01 1 212800050 212800050 G T FAM71A 3'UTR 0.23 TCGA-56-A62T-01 1 214500994 214500994 C T SMYD2 Missense_Mutation p.P211L 0.37 deleterious(0) probably_damaging(0.941) TCGA-56-A62T-01 1 216256844 216256844 C A USH2A Missense_Mutation p.G1751V 0.36 probably_damaging(0.999) TCGA-56-A62T-01 1 22169793 22169793 G A HSPG2 Missense_Mutation p.P2919S 0.19 benign(0.284) TCGA-56-A62T-01 1 223178120 223178120 C T DISP1 Silent p.F1127F 0.15 TCGA-56-A62T-01 1 225594366 225594366 G A LBR Missense_Mutation p.L495F 0.22 tolerated(0.23) possibly_damaging(0.626) TCGA-56-A62T-01 1 22987891 22987891 C T C1QB 3'UTR 0.16 TCGA-56-A62T-01 1 232551274 232551274 C A SIPA1L2 Missense_Mutation p.W1576C 0.15 deleterious(0) probably_damaging(1) TCGA-56-A62T-01 1 236907957 236907957 C T ACTN2 Silent p.Y429Y 0.41 TCGA-56-A62T-01 1 237777466 237777466 G A RYR2 Missense_Mutation p.V1680M 0.32 benign(0.139) TCGA-56-A62T-01 1 237777910 237777910 C A RYR2 Missense_Mutation p.L1828M 0.39 benign(0.311) TCGA-56-A62T-01 1 237948023 237948023 C G RYR2 Silent p.P4337P 0.24 TCGA-56-A62T-01 1 237948182 237948182 G T RYR2 Missense_Mutation p.Q4390H 0.46 benign(0.07) TCGA-56-A62T-01 1 23956011 23956011 C A MDS2 5'UTR 0.37 TCGA-56-A62T-01 1 246810459 246810459 G C CNST Missense_Mutation p.G319A 0.33 deleterious(0.04) benign(0.019) TCGA-56-A62T-01 1 248039212 248039212 G C TRIM58 Missense_Mutation p.K294N 0.18 tolerated(0.08) possibly_damaging(0.821) TCGA-56-A62T-01 1 248262923 248262923 C A OR2L13 Nonsense_Mutation p.Y82* 0.39 TCGA-56-A62T-01 1 248636949 248636949 T A OR2T3 Missense_Mutation p.S100T 0.28 tolerated(0.36) benign(0.024) TCGA-56-A62T-01 1 248756392 248756392 A C OR2T10 Missense_Mutation p.H226Q 0.40 tolerated(0.3) probably_damaging(0.934) TCGA-56-A62T-01 1 25785316 25785316 A G TMEM57 Missense_Mutation p.T363A 0.20 tolerated(0.79) benign(0) TCGA-56-A62T-01 1 27100075 27100075 G T ARID1A Nonsense_Mutation p.E1291* 0.32 TCGA-56-A62T-01 1 27631508 27631508 G A WDTC1 Missense_Mutation p.V553I 0.20 tolerated(0.12) possibly_damaging(0.704) TCGA-56-A62T-01 1 36228852 36228852 C A CLSPN Missense_Mutation p.G218V 0.44 deleterious(0) probably_damaging(0.982) TCGA-56-A62T-01 1 38061495 38061495 C A GNL2 5'UTR 0.50 TCGA-56-A62T-01 1 38288356 38288356 C A MTF1 Nonsense_Mutation p.E402* 0.49 TCGA-56-A62T-01 1 40777388 40777388 C A COL9A2 Splice_Site p.X140_splice 0.34 TCGA-56-A62T-01 1 53727854 53727854 C A LRP8 Missense_Mutation p.W600C 0.39 deleterious(0) probably_damaging(1) TCGA-56-A62T-01 1 54423866 54423866 G T LRRC42 Missense_Mutation p.R173L 0.21 tolerated(0.07) possibly_damaging(0.829) TCGA-56-A62T-01 1 71437338 71437338 C G PTGER3 Intron 0.37 TCGA-56-A62T-01 1 71440067 71440067 C A PTGER3 Intron 0.39 TCGA-56-A62T-01 1 74835073 74835073 A T FPGT-TNNI3K Splice_Site p.X605_splice 0.38 TCGA-56-A62T-01 1 75677224 75677224 C A SLC44A5 Missense_Mutation p.G659V 0.27 deleterious(0) probably_damaging(0.989) TCGA-56-A62T-01 1 7724819 7724819 G T CAMTA1 Missense_Mutation p.G738C 0.24 deleterious_low_confidence(0) possibly_damaging(0.84) TCGA-56-A62T-01 1 82436180 82436180 A T LPHN2 Silent p.S955S 0.33 TCGA-56-A62T-01 1 89726354 89726354 G A GBP5 3'UTR 0.16 TCGA-56-A62T-01 20 17462727 17462727 C A PCSK2 3'UTR 0.25 TCGA-56-A62T-01 20 1963721 1963721 G T PDYN Missense_Mutation p.Q4K 0.39 tolerated(0.31) benign(0.011) TCGA-56-A62T-01 20 24524169 24524169 C T SYNDIG1 Silent p.L146L 0.17 TCGA-56-A62T-01 20 2774886 2774886 G A CPXM1 Missense_Mutation p.P719S 0.08 deleterious(0.01) probably_damaging(1) TCGA-56-A62T-01 20 2844667 2844667 G A VPS16 Missense_Mutation p.V517I 0.53 tolerated(1) benign(0.01) TCGA-56-A62T-01 20 30419896 30419896 C T MYLK2 Missense_Mutation p.S556F 0.16 deleterious(0) probably_damaging(0.999) TCGA-56-A62T-01 20 3147622 3147622 C G LZTS3 Missense_Mutation p.G63A 0.41 tolerated(0.58) probably_damaging(0.981) TCGA-56-A62T-01 20 31659972 31659972 C T BPIFB3 Silent p.N441N 0.10 TCGA-56-A62T-01 20 36560076 36560076 C T VSTM2L Missense_Mutation p.T54M 0.06 tolerated(0.06) benign(0.035) TCGA-56-A62T-01 20 3740810 3740810 T C C20orf27 5'UTR 0.64 TCGA-56-A62T-01 20 43850928 43850928 C T SEMG2 Missense_Mutation p.H219Y 0.48 deleterious(0.01) probably_damaging(0.985) TCGA-56-A62T-01 20 44569447 44569447 G C PCIF1 Splice_Site p.X130_splice 0.05 TCGA-56-A62T-01 20 44806582 44806582 C A CDH22 Intron 0.25 TCGA-56-A62T-01 20 47296236 47296236 C T PREX1 Missense_Mutation p.D498N 0.28 deleterious(0) possibly_damaging(0.86) TCGA-56-A62T-01 20 47989916 47989916 G C KCNB1 Silent p.T727T 0.27 TCGA-56-A62T-01 20 49458359 49458359 G T BCAS4 Missense_Mutation p.Q137H 0.20 deleterious(0.01) probably_damaging(0.957) TCGA-56-A62T-01 20 49458360 49458360 G T BCAS4 Missense_Mutation p.A138S 0.20 deleterious(0) probably_damaging(0.999) TCGA-56-A62T-01 20 51870106 51870106 G T TSHZ2 Missense_Mutation p.G37C 0.18 tolerated(0.06) possibly_damaging(0.741) TCGA-56-A62T-01 20 54575877 54575877 G A CBLN4 Silent p.F106F 0.06 TCGA-56-A62T-01 20 56179490 56179490 C A ZBP1 3'UTR 0.60 TCGA-56-A62T-01 20 57769471 57769471 T A ZNF831 Missense_Mutation p.F1133I 0.33 deleterious(0.01) benign(0.259) TCGA-56-A62T-01 20 5923215 5923215 T C TRMT6 Silent p.K295K 0.50 TCGA-56-A62T-01 20 60791323 60791323 C T HRH3 Silent p.S359S 0.33 TCGA-56-A62T-01 20 61511245 61511245 C T DIDO1 Silent p.P2021P 0.12 TCGA-56-A62T-01 20 61982016 61982016 G T CHRNA4 Missense_Mutation p.N249K 0.19 deleterious(0) probably_damaging(0.997) TCGA-56-A62T-01 21 10942755 10942755 C A TPTE Missense_Mutation p.R229L 0.25 deleterious(0) probably_damaging(0.999) TCGA-56-A62T-01 21 10944788 10944788 C T TPTE Splice_Site p.X149_splice 0.07 TCGA-56-A62T-01 21 19756010 19756010 G A TMPRSS15 Missense_Mutation p.L144F 0.40 deleterious(0) benign(0.367) TCGA-56-A62T-01 21 22804589 22804589 C A NCAM2 Missense_Mutation p.H548N 0.49 tolerated(0.27) benign(0.068) TCGA-56-A62T-01 21 22804590 22804590 A T NCAM2 Missense_Mutation p.H548L 0.47 tolerated(0.39) benign(0.018) TCGA-56-A62T-01 21 28327168 28327168 C T ADAMTS5 Missense_Mutation p.C376Y 0.29 deleterious(0) probably_damaging(1) TCGA-56-A62T-01 21 41450833 41450833 C T DSCAM Missense_Mutation p.G1498S 0.56 tolerated(0.1) probably_damaging(1) TCGA-56-A62T-01 21 45745116 45745116 G T PFKL Missense_Mutation p.C653F 0.64 deleterious(0) probably_damaging(0.999) TCGA-56-A62T-01 22 19001888 19001888 T C DGCR9 5'Flank 0.38 TCGA-56-A62T-01 22 31032644 31032644 G T SLC35E4 Missense_Mutation p.W69C 0.35 deleterious(0) probably_damaging(0.998) TCGA-56-A62T-01 22 35802622 35802622 G T MCM5 Missense_Mutation p.R167L 0.11 tolerated(0.34) benign(0.073) TCGA-56-A62T-01 22 38046220 38046220 G A SH3BP1 Missense_Mutation p.A460T 0.24 deleterious(0) possibly_damaging(0.576) TCGA-56-A62T-01 22 42606254 42606254 G T TCF20 Silent p.S1686S 0.47 TCGA-56-A62T-01 2 107042500 107042500 A G RGPD3 Missense_Mutation p.Y884H 0.04 deleterious(0.03) possibly_damaging(0.809) TCGA-56-A62T-01 2 108487593 108487593 C A RGPD4 Missense_Mutation p.P1045T 0.30 deleterious(0) probably_damaging(0.999) TCGA-56-A62T-01 2 132021452 132021452 C G POTEE Silent p.A808A 0.26 TCGA-56-A62T-01 2 136389288 136389288 G T R3HDM1 Missense_Mutation p.R166S 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-56-A62T-01 2 136566820 136566820 A C LCT Missense_Mutation p.W1033G 0.32 deleterious(0) probably_damaging(0.999) TCGA-56-A62T-01 2 143798061 143798061 A T KYNU Missense_Mutation p.E369V 0.27 deleterious(0) probably_damaging(0.995) TCGA-56-A62T-01 2 145157563 145157563 G T ZEB2 Missense_Mutation p.F397L 0.26 tolerated(0.22) benign(0.129) TCGA-56-A62T-01 2 14774281 14774281 G T FAM84A Missense_Mutation p.G60C 0.31 deleterious(0.03) possibly_damaging(0.615) TCGA-56-A62T-01 2 15374871 15374871 C A NBAS Nonsense_Mutation p.E1982* 0.38 TCGA-56-A62T-01 2 155307040 155307040 A T GALNT13 Missense_Mutation p.R550W 0.31 deleterious(0) possibly_damaging(0.461) TCGA-56-A62T-01 2 162851495 162851495 A G DPP4 Silent p.D725D 0.45 TCGA-56-A62T-01 2 167262731 167262731 A T SCN7A Missense_Mutation p.S1470T 0.36 tolerated(0.16) benign(0.047) TCGA-56-A62T-01 2 168107471 168107471 C T XIRP2 Missense_Mutation p.A3190V 0.13 probably_damaging(1) TCGA-56-A62T-01 2 169940050 169940050 C T DHRS9 Silent p.G175G 0.48 TCGA-56-A62T-01 2 171070951 171070951 G A MYO3B Silent p.L128L 0.21 TCGA-56-A62T-01 2 179203794 179203794 G T OSBPL6 Missense_Mutation p.Q289H 0.16 tolerated(0.42) probably_damaging(0.99) TCGA-56-A62T-01 2 179501245 179501245 C A TTN Missense_Mutation p.D13737Y 0.32 TCGA-56-A62T-01 2 179583655 179583655 G A TTN Missense_Mutation p.P8091L 0.25 TCGA-56-A62T-01 2 197183398 197183398 C A HECW2 Missense_Mutation p.R739L 0.48 tolerated_low_confidence(0.06) benign(0.149) TCGA-56-A62T-01 2 198482541 198482541 G T RFTN2 Missense_Mutation p.Q345K 0.33 deleterious(0) probably_damaging(0.999) TCGA-56-A62T-01 2 198571220 198571220 G T MARS2 Missense_Mutation p.R364L 0.17 tolerated(0.25) benign(0.016) TCGA-56-A62T-01 2 203644207 203644207 G T ICA1L 3'UTR 0.24 TCGA-56-A62T-01 2 206166421 206166421 C T PARD3B Silent p.L814L 0.10 TCGA-56-A62T-01 2 207169448 207169448 C T ZDBF2 Nonsense_Mutation p.Q66* 0.32 TCGA-56-A62T-01 2 207172581 207172581 A T ZDBF2 Missense_Mutation p.E1110V 0.32 tolerated(0.09) benign(0.016) TCGA-56-A62T-01 2 208432228 208432228 G T CREB1 Silent p.V115V 0.33 TCGA-56-A62T-01 2 208432230 208432230 A G CREB1 Missense_Mutation p.D116G 0.32 tolerated(0.05) possibly_damaging(0.622) TCGA-56-A62T-01 2 211018871 211018871 T C KANSL1L Missense_Mutation p.M146V 0.13 tolerated(0.15) benign(0.005) TCGA-56-A62T-01 2 215819997 215819997 A T ABCA12 Missense_Mutation p.F2108I 0.37 deleterious(0.01) probably_damaging(0.99) TCGA-56-A62T-01 2 215866462 215866462 C A ABCA12 Splice_Site p.X895_splice 0.29 TCGA-56-A62T-01 2 220404350 220404350 A G CHPF Missense_Mutation p.S695P 0.12 tolerated(0.28) benign(0.001) TCGA-56-A62T-01 2 220440249 220440249 G T INHA 3'UTR 0.37 TCGA-56-A62T-01 2 223436743 223436743 T A FARSB Splice_Site p.X540_splice 0.19 TCGA-56-A62T-01 2 238283335 238283335 G C COL6A3 Silent p.P1133P 0.12 TCGA-56-A62T-01 2 239025589 239025589 G A ESPNL Missense_Mutation p.D301N 0.53 tolerated(0.06) probably_damaging(1) TCGA-56-A62T-01 2 240024509 240024509 G A HDAC4 Silent p.P727P 0.28 TCGA-56-A62T-01 2 24011434 24011434 T C ATAD2B Silent p.Q908Q 0.42 TCGA-56-A62T-01 2 26681076 26681076 C A OTOF 3'UTR 0.38 TCGA-56-A62T-01 2 26707412 26707412 C T OTOF Missense_Mutation p.V379M 0.10 deleterious(0) probably_damaging(1) TCGA-56-A62T-01 2 27746319 27746319 G T GCKR 3'UTR 0.46 TCGA-56-A62T-01 2 28561419 28561419 G T BRE 3'UTR 0.29 TCGA-56-A62T-01 2 31621452 31621452 C G XDH Missense_Mutation p.E140D 0.35 tolerated(0.17) benign(0.168) TCGA-56-A62T-01 2 44073389 44073389 C A ABCG8 Silent p.G87G 0.31 TCGA-56-A62T-01 2 45169447 45169447 C A SIX3 Silent p.G68G 0.25 TCGA-56-A62T-01 2 54036372 54036372 G T ERLEC1 Nonsense_Mutation p.E355* 0.18 TCGA-56-A62T-01 2 60687719 60687719 G T BCL11A Missense_Mutation p.N776K 0.18 deleterious(0.01) benign(0.439) TCGA-56-A62T-01 2 60689277 60689277 C A BCL11A Missense_Mutation p.G257V 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-56-A62T-01 2 61546411 61546411 G C USP34 Missense_Mutation p.S1022C 0.30 deleterious(0) benign(0.353) TCGA-56-A62T-01 2 62099724 62099724 C A CCT4 Splice_Site p.X376_splice 0.33 TCGA-56-A62T-01 2 71892301 71892301 G C DYSF Silent p.P1728P 0.36 TCGA-56-A62T-01 2 74273859 74273859 G A TET3 Missense_Mutation p.C137Y 0.28 deleterious(0) probably_damaging(0.998) TCGA-56-A62T-01 2 79350395 79350395 A C REG1A 3'UTR 0.47 TCGA-56-A62T-01 2 80101211 80101211 G C CTNNA2 Missense_Mutation p.D199H 0.21 deleterious(0) possibly_damaging(0.867) TCGA-56-A62T-01 2 80530865 80530865 G T LRRTM1 Missense_Mutation p.A27D 0.38 deleterious(0.05) benign(0.002) TCGA-56-A62T-01 2 84518353 84518353 G T FUNDC2P2 RNA 0.32 TCGA-56-A62T-01 2 90078067 90078067 C A IGKV3D-20 Missense_Mutation p.P35Q 0.25 tolerated(0.13) benign(0.125) TCGA-56-A62T-01 2 90229463 90229463 C T IGKV1D-42 Missense_Mutation p.L95F 0.23 tolerated(0.1) probably_damaging(0.957) TCGA-56-A62T-01 3 100374826 100374826 C A GPR128 Silent p.R604R 0.23 TCGA-56-A62T-01 3 100951644 100951644 C A IMPG2 Missense_Mutation p.G1072W 0.56 deleterious(0) probably_damaging(1) TCGA-56-A62T-01 3 101046658 101046658 T A SENP7 Missense_Mutation p.Y956F 0.16 deleterious(0) probably_damaging(0.973) TCGA-56-A62T-01 3 101080696 101080696 C A SENP7 Nonsense_Mutation p.E496* 0.27 TCGA-56-A62T-01 3 101572528 101572528 G T NFKBIZ Silent p.V386V 0.23 TCGA-56-A62T-01 3 107447794 107447794 C T BBX Silent p.N196N 0.09 TCGA-56-A62T-01 3 108195243 108195243 C G MYH15 Splice_Site p.X431_splice 0.43 TCGA-56-A62T-01 3 108475909 108475909 G T RETNLB Missense_Mutation p.L42I 0.48 tolerated(0.15) benign(0.169) TCGA-56-A62T-01 3 113497588 113497588 G T ATP6V1A Intron 0.24 TCGA-56-A62T-01 3 124413335 124413335 A T AC080008.1 3'Flank 0.25 TCGA-56-A62T-01 3 130287151 130287151 G T COL6A6 Missense_Mutation p.G702C 0.51 deleterious(0) probably_damaging(1) TCGA-56-A62T-01 3 136002781 136002781 A G PCCB Missense_Mutation p.M236V 0.38 deleterious_low_confidence(0) possibly_damaging(0.895) TCGA-56-A62T-01 3 13896070 13896070 G A WNT7A Missense_Mutation p.R177W 0.27 deleterious(0) probably_damaging(0.999) TCGA-56-A62T-01 3 141535746 141535746 A C GRK7 Missense_Mutation p.K506Q 0.49 tolerated(0.81) benign(0.014) TCGA-56-A62T-01 3 14535219 14535219 C G SLC6A6 3'Flank 0.60 TCGA-56-A62T-01 3 145917730 145917730 C T PLSCR4 Missense_Mutation p.R165K 0.08 deleterious(0.01) probably_damaging(0.925) TCGA-56-A62T-01 3 146239484 146239484 G A PLSCR1 Silent p.I195I 0.10 TCGA-56-A62T-01 3 148596285 148596285 T G CPA3 Missense_Mutation p.D109E 0.10 tolerated(0.74) benign(0.001) TCGA-56-A62T-01 3 148599413 148599413 G T CPA3 Missense_Mutation p.W227C 0.40 deleterious(0) probably_damaging(1) TCGA-56-A62T-01 3 150377858 150377858 G A FAM194A Missense_Mutation p.R605C 0.11 deleterious(0.01) probably_damaging(0.97) TCGA-56-A62T-01 3 167510460 167510460 G T SERPINI1 Silent p.G188G 0.37 TCGA-56-A62T-01 3 170858275 170858275 C A TNIK Silent p.L415L 0.54 TCGA-56-A62T-01 3 172642083 172642083 G T SPATA16 Missense_Mutation p.T418N 0.51 deleterious(0.01) benign(0.005) TCGA-56-A62T-01 3 176744165 176744165 C A TBL1XR1 Missense_Mutation p.G505V 0.21 deleterious(0) possibly_damaging(0.632) TCGA-56-A62T-01 3 176744166 176744166 C T TBL1XR1 Missense_Mutation p.G505S 0.18 tolerated(0.14) possibly_damaging(0.87) TCGA-56-A62T-01 3 189690810 189690810 C A LEPREL1 Missense_Mutation p.G518C 0.55 deleterious(0) probably_damaging(0.928) TCGA-56-A62T-01 3 193039544 193039544 G C ATP13A5 Missense_Mutation p.A614G 0.54 tolerated(0.14) possibly_damaging(0.574) TCGA-56-A62T-01 3 193082048 193082048 G A ATP13A5 Missense_Mutation p.H29Y 0.57 tolerated(0.3) benign(0.121) TCGA-56-A62T-01 3 197723121 197723121 G T LMLN Nonsense_Mutation p.E375* 0.30 TCGA-56-A62T-01 3 30715632 30715632 A G TGFBR2 Silent p.L455L 0.38 TCGA-56-A62T-01 3 42610462 42610462 T A SEC22C Missense_Mutation p.H26L 0.64 tolerated(0.66) benign(0.002) TCGA-56-A62T-01 3 44763294 44763294 G T ZNF502 Missense_Mutation p.G329W 0.58 deleterious(0) probably_damaging(0.999) TCGA-56-A62T-01 3 44916126 44916126 C A TGM4 5'UTR 0.75 TCGA-56-A62T-01 3 57148811 57148811 A G IL17RD Silent p.H73H 0.59 TCGA-56-A62T-01 3 71027030 71027030 C A FOXP1 Nonsense_Mutation p.G435* 0.46 TCGA-56-A62T-01 3 89391034 89391034 G C EPHA3 Missense_Mutation p.G367A 0.64 tolerated(0.64) benign(0.011) TCGA-56-A62T-01 3 9547803 9547803 C T LHFPL4 Missense_Mutation p.G164E 0.63 deleterious(0.03) benign(0.392) TCGA-56-A62T-01 3 97887787 97887787 C T OR5H15 Silent p.L82L 0.19 TCGA-56-A62T-01 3 98109956 98109956 C A OR5K3 Nonsense_Mutation p.Y149* 0.57 TCGA-56-A62T-01 4 10446905 10446905 C T ZNF518B Missense_Mutation p.V350M 0.41 tolerated(0.06) benign(0.284) TCGA-56-A62T-01 4 114286208 114286208 T G ANK2 Silent p.V3634V 0.43 TCGA-56-A62T-01 4 114288729 114288729 G A ANK2 Silent p.S3680S 0.16 TCGA-56-A62T-01 4 119234512 119234512 T C PRSS12 Missense_Mutation p.T445A 0.18 tolerated(0.39) benign(0.005) TCGA-56-A62T-01 4 134072474 134072474 G T PCDH10 Silent p.V393V 0.21 TCGA-56-A62T-01 4 141598209 141598209 G A TBC1D9 Missense_Mutation p.R300W 0.28 deleterious(0) probably_damaging(0.979) TCGA-56-A62T-01 4 144464717 144464717 G T SMARCA5 Missense_Mutation p.M653I 0.15 tolerated(0.09) benign(0.014) TCGA-56-A62T-01 4 148743895 148743895 C A ARHGAP10 Silent p.R58R 0.13 TCGA-56-A62T-01 4 152054377 152054377 C A SH3D19 Missense_Mutation p.C576F 0.07 deleterious(0) probably_damaging(0.999) TCGA-56-A62T-01 4 153875428 153875428 A G FHDC1 Missense_Mutation p.E207G 0.12 deleterious(0) probably_damaging(1) TCGA-56-A62T-01 4 155241775 155241775 C A DCHS2 Missense_Mutation p.Q1137H 0.19 deleterious(0.03) probably_damaging(0.995) TCGA-56-A62T-01 4 155665935 155665935 C T LRAT Missense_Mutation p.P153S 0.49 tolerated(0.49) benign(0.007) TCGA-56-A62T-01 4 156634570 156634570 G A GUCY1A3 Silent p.G469G 0.48 TCGA-56-A62T-01 4 164393474 164393474 C A TKTL2 Missense_Mutation p.M471I 0.58 tolerated(1) benign(0.006) TCGA-56-A62T-01 4 169835083 169835083 C T PALLD Silent p.R876R 0.56 TCGA-56-A62T-01 4 183658019 183658019 C A TENM3 Missense_Mutation p.S1009Y 0.50 deleterious(0) possibly_damaging(0.831) TCGA-56-A62T-01 4 47525184 47525184 G T ATP10D Missense_Mutation p.G214V 0.22 deleterious(0) probably_damaging(0.973) TCGA-56-A62T-01 4 6302502 6302502 T G WFS1 Missense_Mutation p.L327R 0.08 deleterious(0) probably_damaging(1) TCGA-56-A62T-01 4 66189868 66189868 C T EPHA5 Missense_Mutation p.M1026I 0.15 tolerated(0.08) benign(0.006) TCGA-56-A62T-01 4 66197803 66197803 C A EPHA5 Missense_Mutation p.A966S 0.33 tolerated(1) benign(0.039) TCGA-56-A62T-01 4 680044 680044 C A MFSD7 Missense_Mutation p.M114I 0.37 tolerated(0.6) benign(0) TCGA-56-A62T-01 4 71347187 71347187 T A MUC7 Silent p.S242S 0.49 TCGA-56-A62T-01 4 94316845 94316845 G A GRID2 Missense_Mutation p.V445I 0.34 tolerated(0.19) possibly_damaging(0.464) TCGA-56-A62T-01 5 110409174 110409174 C T TSLP Intron 0.10 TCGA-56-A62T-01 5 129521219 129521219 G C CHSY3 Missense_Mutation p.G795A 0.10 deleterious(0) possibly_damaging(0.896) TCGA-56-A62T-01 5 135276225 135276225 A G FBXL21 RNA 0.67 TCGA-56-A62T-01 5 135499053 135499053 C T SMAD5 Nonsense_Mutation p.Q250* 0.09 TCGA-56-A62T-01 5 137593428 137593428 C A GFRA3 Nonsense_Mutation p.E229* 0.68 TCGA-56-A62T-01 5 13866359 13866359 C A DNAH5 Missense_Mutation p.Q1362H 0.71 benign(0.216) TCGA-56-A62T-01 5 140531180 140531180 G A PCDHB6 Missense_Mutation p.A448T 0.70 tolerated(0.32) benign(0.001) TCGA-56-A62T-01 5 140588694 140588694 A G PCDHB12 Missense_Mutation p.K72R 0.65 tolerated_low_confidence(0.14) benign(0.063) TCGA-56-A62T-01 5 140615497 140615497 C G PCDHB18 RNA 0.55 TCGA-56-A62T-01 5 140615950 140615950 G T PCDHB18 RNA 0.60 TCGA-56-A62T-01 5 140739893 140739893 G A PCDHGB2 Missense_Mutation p.R64Q 0.74 deleterious(0.02) possibly_damaging(0.595) TCGA-56-A62T-01 5 140741796 140741796 G A PCDHGB2 Silent p.L698L 0.69 TCGA-56-A62T-01 5 140744205 140744205 T A PCDHGA5 Missense_Mutation p.V103E 0.70 deleterious_low_confidence(0.01) benign(0.024) TCGA-56-A62T-01 5 140794196 140794196 G T PCDHGA10 Missense_Mutation p.S485I 0.64 deleterious_low_confidence(0.01) benign(0.301) TCGA-56-A62T-01 5 148427438 148427438 C T SH3TC2 Missense_Mutation p.R89H 0.04 tolerated(0.57) benign(0.003) TCGA-56-A62T-01 5 156464343 156464343 C A HAVCR1 Silent p.T289T 0.53 TCGA-56-A62T-01 5 156641271 156641271 G T ITK Missense_Mutation p.C132F 0.68 deleterious(0) probably_damaging(0.999) TCGA-56-A62T-01 5 169697851 169697851 T C LCP2 Missense_Mutation p.N132S 0.68 tolerated(0.21) benign(0.01) TCGA-56-A62T-01 5 176025294 176025294 C A GPRIN1 Silent p.A514A 0.62 TCGA-56-A62T-01 5 21501807 21501807 C G GUSBP1 RNA 0.19 TCGA-56-A62T-01 5 31316401 31316401 G C CDH6 Missense_Mutation p.E493Q 0.59 deleterious(0.02) probably_damaging(0.995) TCGA-56-A62T-01 5 5462527 5462527 C T KIAA0947 Missense_Mutation p.S1027F 0.66 deleterious(0.02) possibly_damaging(0.61) TCGA-56-A62T-01 5 57790782 57790782 G C GAPT Missense_Mutation p.R140P 0.71 tolerated(0.32) benign(0.01) TCGA-56-A62T-01 5 66255015 66255015 C T MAST4 Intron 0.68 TCGA-56-A62T-01 5 88018713 88018713 C A MEF2C Missense_Mutation p.S387I 0.65 deleterious(0.01) possibly_damaging(0.602) TCGA-56-A62T-01 5 90001251 90001253 TCA - GPR98 In_Frame_Del p.Q2808del 0.14 TCGA-56-A62T-01 6 119337999 119337999 C G FAM184A Missense_Mutation p.K481N 0.74 tolerated(0.08) possibly_damaging(0.848) TCGA-56-A62T-01 6 128150851 128150851 G T THEMIS Missense_Mutation p.T160N 0.68 tolerated(0.89) benign(0.001) TCGA-56-A62T-01 6 133004442 133004442 A - VNN1 Frame_Shift_Del p.L460Cfs*4 0.42 TCGA-56-A62T-01 6 133046074 133046074 C A VNN3 Missense_Mutation p.M194I 0.61 tolerated_low_confidence(0.05) benign(0.002) TCGA-56-A62T-01 6 146875811 146875811 C T RAB32 3'UTR 0.26 TCGA-56-A62T-01 6 150240588 150240588 G A RAET1G Intron 0.40 TCGA-56-A62T-01 6 151161875 151161875 T A PLEKHG1 Missense_Mutation p.V1334D 0.18 deleterious(0.02) benign(0.193) TCGA-56-A62T-01 6 168479593 168479593 G T FRMD1 Missense_Mutation p.P61H 0.65 deleterious(0) probably_damaging(1) TCGA-56-A62T-01 6 24583929 24583929 C A KIAA0319 Silent p.V332V 0.76 TCGA-56-A62T-01 6 26376803 26376803 G A BTN3A2 3'UTR 0.69 TCGA-56-A62T-01 6 29080039 29080039 C T OR2J3 Silent p.D124D 0.67 TCGA-56-A62T-01 6 31106498 31106498 C T PSORS1C1 Missense_Mutation p.R37C 0.38 tolerated_low_confidence(0.08) benign(0) TCGA-56-A62T-01 6 32411622 32411622 G T HLA-DRA Missense_Mutation p.G234W 0.29 deleterious(0) probably_damaging(1) TCGA-56-A62T-01 6 39047409 39047409 G T GLP1R Missense_Mutation p.M371I 0.70 tolerated(0.12) benign(0.006) TCGA-56-A62T-01 6 39895170 39895170 G A MOCS1 Silent p.L50L 0.63 TCGA-56-A62T-01 6 46657659 46657659 G T TDRD6 Silent p.V598V 0.60 TCGA-56-A62T-01 6 49582538 49582538 G - RHAG Frame_Shift_Del p.S224Afs*18 0.41 TCGA-56-A62T-01 6 54173322 54173322 G A TINAG 5'UTR 0.73 TCGA-56-A62T-01 6 71234658 71234658 A G FAM135A Missense_Mutation p.D624G 0.69 tolerated(0.89) benign(0) TCGA-56-A62T-01 6 7373599 7373599 A G CAGE1 Silent p.L485L 0.81 TCGA-56-A62T-01 6 84302258 84302258 C T SNAP91 Splice_Site p.X616_splice 0.60 TCGA-56-A62T-01 6 89975480 89975480 C - GABRR2 Frame_Shift_Del p.W247Cfs*28 0.37 TCGA-56-A62T-01 6 99353393 99353393 C A FBXL4 Nonsense_Mutation p.E338* 0.70 TCGA-56-A62T-01 7 100552514 100552514 G T MUC3A Missense_Mutation p.S422I 0.19 deleterious(0) probably_damaging(0.991) TCGA-56-A62T-01 7 100732595 100732595 G T TRIM56 Missense_Mutation p.V668F 0.44 deleterious(0.01) benign(0.101) TCGA-56-A62T-01 7 102895234 102895234 G T DPY19L2P2 RNA 0.47 TCGA-56-A62T-01 7 11416258 11416258 C T THSD7A Missense_Mutation p.G1610S 0.38 deleterious(0) benign(0.322) TCGA-56-A62T-01 7 121756951 121756951 C G AASS Missense_Mutation p.E250Q 0.14 tolerated(0.14) possibly_damaging(0.875) TCGA-56-A62T-01 7 124387056 124387056 C T GPR37 Silent p.T455T 0.18 TCGA-56-A62T-01 7 127894579 127894579 G A LEP Missense_Mutation p.M89I 0.26 deleterious(0.01) benign(0.001) TCGA-56-A62T-01 7 128355675 128355675 C A FAM71F1 Nonsense_Mutation p.C60* 0.47 TCGA-56-A62T-01 7 128415528 128415528 A T OPN1SW Missense_Mutation p.V106D 0.22 tolerated(0.13) benign(0.033) TCGA-56-A62T-01 7 131864635 131864635 C A PLXNA4 Missense_Mutation p.A1229S 0.18 tolerated(0.49) benign(0.001) TCGA-56-A62T-01 7 135098295 135098295 C G CNOT4 Missense_Mutation p.C210S 0.53 deleterious(0) probably_damaging(0.999) TCGA-56-A62T-01 7 136848996 136848996 C G hsa-mir-490 Intron 0.23 TCGA-56-A62T-01 7 142724138 142724138 C T OR9A2 Missense_Mutation p.A28T 0.39 tolerated(0.33) benign(0.033) TCGA-56-A62T-01 7 143747691 143747691 C A OR2A5 Missense_Mutation p.A66D 0.55 deleterious(0) possibly_damaging(0.796) TCGA-56-A62T-01 7 148703057 148703057 T A PDIA4 Missense_Mutation p.K407M 0.11 tolerated(0.1) possibly_damaging(0.855) TCGA-56-A62T-01 7 148801210 148801210 C T ZNF425 Missense_Mutation p.G585S 0.14 tolerated(1) benign(0) TCGA-56-A62T-01 7 149485470 149485470 C T SSPO RNA 0.42 TCGA-56-A62T-01 7 21784504 21784504 T A DNAH11 Missense_Mutation p.M2785K 0.20 benign(0.062) TCGA-56-A62T-01 7 27142140 27142140 C T HOXA2 5'UTR 0.34 TCGA-56-A62T-01 7 36194630 36194630 C T EEPD1 Silent p.L233L 0.18 TCGA-56-A62T-01 7 44012257 44012257 T A POLR2J4 RNA 0.70 TCGA-56-A62T-01 7 5410675 5410675 C A TNRC18 Missense_Mutation p.A1184S 0.70 benign(0.022) TCGA-56-A62T-01 7 57193812 57193812 C T ZNF479 Missense_Mutation p.V59I 0.57 tolerated(0.2) benign(0.017) TCGA-56-A62T-01 7 72657926 72657926 G T GTF2IRD2P1 RNA 0.21 TCGA-56-A62T-01 7 72662610 72662610 C T GTF2IRD2P1 Intron 0.42 TCGA-56-A62T-01 7 77230015 77230015 A T PTPN12 Missense_Mutation p.N196I 0.19 deleterious(0) possibly_damaging(0.785) TCGA-56-A62T-01 7 77885360 77885360 G C MAGI2 Missense_Mutation p.I649M 0.47 deleterious(0) probably_damaging(0.964) TCGA-56-A62T-01 7 81635130 81635130 C A CACNA2D1 Missense_Mutation p.G489V 0.27 deleterious(0) probably_damaging(0.921) TCGA-56-A62T-01 7 82544665 82544665 C G PCLO Missense_Mutation p.E4213Q 0.25 unknown(0) TCGA-56-A62T-01 7 98453779 98453779 C A TMEM130 Silent p.V193V 0.43 TCGA-56-A62T-01 7 99786635 99786635 G A STAG3 Silent p.L237L 0.48 TCGA-56-A62T-01 8 100155285 100155285 A G VPS13B Missense_Mutation p.I579V 0.52 tolerated(1) benign(0) TCGA-56-A62T-01 8 10468344 10468344 C A RP1L1 Silent p.A1088A 0.36 TCGA-56-A62T-01 8 105507516 105507516 A C LRP12 Intron 0.36 TCGA-56-A62T-01 8 113253960 113253960 G T CSMD3 Missense_Mutation p.P3486Q 0.49 tolerated(0.09) benign(0.162) TCGA-56-A62T-01 8 113253961 113253961 G T CSMD3 Missense_Mutation p.P3486T 0.49 tolerated(0.48) benign(0.084) TCGA-56-A62T-01 8 113812448 113812448 G T CSMD3 Missense_Mutation p.L639M 0.30 deleterious(0) probably_damaging(0.972) TCGA-56-A62T-01 8 121467795 121467795 C G MTBP Missense_Mutation p.T202S 0.09 tolerated(0.12) possibly_damaging(0.866) TCGA-56-A62T-01 8 131812678 131812678 G T ADCY8 Missense_Mutation p.F1018L 0.46 deleterious(0.01) probably_damaging(0.997) TCGA-56-A62T-01 8 139703091 139703091 G T COL22A1 Silent p.P927P 0.22 TCGA-56-A62T-01 8 144776067 144776067 G T ZNF707 Silent p.P161P 0.60 TCGA-56-A62T-01 8 144995025 144995025 C A PLEC Missense_Mutation p.E3125D 0.23 benign(0.062) TCGA-56-A62T-01 8 144996727 144996727 C A PLEC Missense_Mutation p.R2594L 0.45 possibly_damaging(0.667) TCGA-56-A62T-01 8 1514032 1514032 G T DLGAP2 Nonsense_Mutation p.G392* 0.40 TCGA-56-A62T-01 8 19805701 19805701 T A LPL Missense_Mutation p.D33E 0.41 tolerated(0.11) benign(0.058) TCGA-56-A62T-01 8 22147754 22147754 T A PIWIL2 Missense_Mutation p.I359N 0.20 deleterious(0) possibly_damaging(0.713) TCGA-56-A62T-01 8 27779751 27779751 G T SCARA5 Missense_Mutation p.R85S 0.12 deleterious(0.01) benign(0.14) TCGA-56-A62T-01 8 30938539 30938539 A T WRN Missense_Mutation p.Q332H 0.11 deleterious(0.03) possibly_damaging(0.832) TCGA-56-A62T-01 8 38677339 38677339 G T TACC1 Missense_Mutation p.D193Y 0.48 tolerated(0.06) possibly_damaging(0.873) TCGA-56-A62T-01 8 53084391 53084391 C A ST18 Missense_Mutation p.V344F 0.23 tolerated(0.25) possibly_damaging(0.757) TCGA-56-A62T-01 8 53084572 53084572 G T ST18 Missense_Mutation p.S283R 0.29 tolerated(0.31) benign(0.001) TCGA-56-A62T-01 8 6389851 6389851 A G ANGPT2 Splice_Site p.X148_splice 0.34 TCGA-56-A62T-01 8 76471058 76471058 A C HNF4G Silent p.P293P 0.51 TCGA-56-A62T-01 8 8175884 8175884 T A SGK223 Missense_Mutation p.Q1334L 0.39 benign(0.034) TCGA-56-A62T-01 8 91090675 91090675 C T CALB1 Missense_Mutation p.E53K 0.09 tolerated(0.31) benign(0.008) TCGA-56-A62T-01 8 97620698 97620698 G T SDC2 Missense_Mutation p.A148S 0.22 deleterious(0) probably_damaging(0.999) TCGA-56-A62T-01 9 1055835 1055835 C A DMRT2 Intron 0.14 TCGA-56-A62T-01 9 109701278 109701278 A G ZNF462 Missense_Mutation p.H2106R 0.16 probably_damaging(0.996) TCGA-56-A62T-01 9 117119142 117119142 C T AKNA Splice_Site p.X949_splice 0.62 TCGA-56-A62T-01 9 117119143 117119143 C A AKNA Missense_Mutation p.S949I 0.60 deleterious(0) probably_damaging(0.999) TCGA-56-A62T-01 9 125281705 125281705 G T OR1J4 Missense_Mutation p.G96W 0.64 deleterious_low_confidence(0) benign(0.228) TCGA-56-A62T-01 9 128230362 128230362 C G MAPKAP1 Missense_Mutation p.D412H 0.56 deleterious(0.01) probably_damaging(0.989) TCGA-56-A62T-01 9 129458743 129458743 C A LMX1B 3'UTR 0.66 TCGA-56-A62T-01 9 130716156 130716156 G A FAM102A Silent p.F65F 0.73 TCGA-56-A62T-01 9 136633565 136633565 C A VAV2 Missense_Mutation p.R863L 0.67 deleterious(0.01) probably_damaging(0.999) TCGA-56-A62T-01 9 136671219 136671219 G T VAV2 Missense_Mutation p.L274I 0.75 tolerated(0.96) possibly_damaging(0.576) TCGA-56-A62T-01 9 139926505 139926505 A T C9orf139 5'UTR 0.58 TCGA-56-A62T-01 9 140250720 140250720 C A EXD3 Missense_Mutation p.A253S 0.57 tolerated(0.12) benign(0.192) TCGA-56-A62T-01 9 21227504 21227504 C A IFNA17 3'UTR 0.56 TCGA-56-A62T-01 9 37801374 37801374 G T DCAF10 Missense_Mutation p.V171F 0.25 deleterious(0) possibly_damaging(0.5) TCGA-56-A62T-01 9 43737330 43737330 C T CNTNAP3B Missense_Mutation p.A67V 0.12 deleterious(0) probably_damaging(0.991) TCGA-56-A62T-01 9 6256131 6256131 G T IL33 Missense_Mutation p.C259F 0.24 tolerated(0.69) benign(0.037) TCGA-56-A62T-01 9 6606621 6606621 C A GLDC Missense_Mutation p.Q228H 0.20 deleterious(0.01) probably_damaging(0.984) TCGA-56-A62T-01 9 70177695 70177695 C A FOXD4L5 Missense_Mutation p.A97S 0.23 tolerated(0.17) possibly_damaging(0.577) TCGA-56-A62T-01 9 82335084 82335084 G T TLE4 Nonsense_Mutation p.E572* 0.74 TCGA-56-A62T-01 9 84534383 84534383 T A SPATA31D5P RNA 0.32 TCGA-56-A62T-01 9 85677458 85677458 C T RASEF Missense_Mutation p.E109K 0.75 tolerated(0.66) benign(0.017) TCGA-56-A62T-01 9 86530469 86530469 C A KIF27 Missense_Mutation p.R13I 0.65 deleterious(0) probably_damaging(1) TCGA-56-A62T-01 9 90396132 90396132 G C CTSL3P RNA 0.70 TCGA-56-A62T-01 9 94519622 94519622 T A ROR2 Missense_Mutation p.Y132F 0.65 tolerated(0.14) possibly_damaging(0.679) TCGA-56-A62T-01 9 95784614 95784614 G T FGD3 Silent p.T500T 0.62 TCGA-56-A62T-01 9 99838847 99838847 G T RP11-520B13.4 RNA 0.40 TCGA-56-A62T-01 X 101097772 101097772 T A NXF5 5'UTR 0.62 TCGA-56-A62T-01 X 101969938 101969938 G T GPRASP2 Silent p.G47G 0.76 TCGA-56-A62T-01 X 103495233 103495233 G T ESX1 Silent p.P299P 1.00 TCGA-56-A62T-01 X 103495234 103495234 G T ESX1 Missense_Mutation p.P299H 1.00 deleterious_low_confidence(0) unknown(0) TCGA-56-A62T-01 X 106224665 106224665 T C MORC4 Silent p.Q239Q 0.67 TCGA-56-A62T-01 X 111090488 111090488 G A TRPC5 Silent p.L518L 0.60 TCGA-56-A62T-01 X 114244120 114244120 A C IL13RA2 Nonsense_Mutation p.Y272* 0.24 TCGA-56-A62T-01 X 119760959 119760959 C A C1GALT1C1 Missense_Mutation p.L21F 0.68 deleterious(0.03) benign(0.028) TCGA-56-A62T-01 X 123657430 123657430 G A TENM1 Silent p.F939F 0.67 TCGA-56-A62T-01 X 123805610 123805610 C T TENM1 Missense_Mutation p.G364E 0.75 tolerated(0.69) possibly_damaging(0.468) TCGA-56-A62T-01 X 130678138 130678138 G A OR13H1 Missense_Mutation p.V31M 0.74 tolerated(0.22) benign(0.018) TCGA-56-A62T-01 X 135430843 135430843 C - GPR112 Frame_Shift_Del p.T1661Pfs*7 0.47 TCGA-56-A62T-01 X 149905154 149905154 G C MTMR1 Missense_Mutation p.E382Q 0.18 deleterious(0) benign(0.381) TCGA-56-A62T-01 X 26157718 26157718 G T MAGEB18 Missense_Mutation p.V206L 0.55 deleterious(0.02) possibly_damaging(0.859) TCGA-56-A62T-01 X 30260930 30260930 G T MAGEB4 Missense_Mutation p.M226I 0.63 tolerated(0.33) benign(0.01) TCGA-56-A62T-01 X 37948750 37948750 C A SYTL5 Silent p.T247T 0.67 TCGA-56-A62T-01 X 41007703 41007703 G A USP9X Missense_Mutation p.G501S 0.67 deleterious(0) probably_damaging(0.994) TCGA-56-A62T-01 X 45011119 45011119 C A CXorf36 Silent p.L360L 0.78 TCGA-56-A62T-01 X 50121227 50121227 G T DGKK RNA 0.75 TCGA-56-A62T-01 X 70344635 70344635 A G MED12 Missense_Mutation p.M666V 0.67 benign(0.012) TCGA-56-A62T-01 X 79286197 79286197 C A TBX22 Missense_Mutation p.Q384K 0.65 tolerated(0.2) benign(0.219) TCGA-56-A62T-01 X 89177622 89177622 A G TGIF2LX Missense_Mutation p.S180G 0.60 tolerated(0.51) possibly_damaging(0.899) TCGA-56-A62T-01 Y 16952958 16952958 G A NLGN4Y Missense_Mutation p.C756Y 0.74 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-56-A62T-01 Y 4967218 4967218 C G PCDH11Y Missense_Mutation p.I533M 0.69 tolerated(0.06) possibly_damaging(0.887) TCGA-58-8386-01 10 100143614 100143614 T C PYROXD2 Missense_Mutation p.M563V 0.36 deleterious(0.01) benign(0.064) TCGA-58-8386-01 10 100453665 100453665 G A HPSE2 Silent p.T332T 0.34 TCGA-58-8386-01 10 17113961 17113961 C T CUBN Missense_Mutation p.G771S 0.34 deleterious(0.03) benign(0.314) TCGA-58-8386-01 10 17126372 17126372 T C CUBN Silent p.Q733Q 0.37 TCGA-58-8386-01 10 23408301 23408301 C T MSRB2 Missense_Mutation p.S122F 0.22 deleterious(0.01) possibly_damaging(0.807) TCGA-58-8386-01 10 32321645 32321645 C A KIF5B Missense_Mutation p.D455Y 0.21 deleterious(0.04) possibly_damaging(0.87) TCGA-58-8386-01 10 70097653 70097653 G C HNRNPH3 Missense_Mutation p.D51H 0.14 deleterious(0) unknown(0) TCGA-58-8386-01 10 74776620 74776620 T C P4HA1 Missense_Mutation p.H429R 0.33 deleterious(0) probably_damaging(0.999) TCGA-58-8386-01 10 87487691 87487691 T A GRID1 Missense_Mutation p.Y485F 0.37 deleterious(0) possibly_damaging(0.679) TCGA-58-8386-01 11 104971318 104971318 C A CARD17 Missense_Mutation p.A66S 0.21 tolerated(0.35) benign(0.017) TCGA-58-8386-01 11 104971319 104971319 C A CARD17 Silent p.G65G 0.21 TCGA-58-8386-01 11 121038875 121038875 A G TECTA Missense_Mutation p.Y1900C 0.32 deleterious(0) probably_damaging(0.997) TCGA-58-8386-01 11 121440904 121440904 G T SORL1 Missense_Mutation p.G1088W 0.28 deleterious(0) probably_damaging(1) TCGA-58-8386-01 11 123814064 123814064 A G OR6T1 Missense_Mutation p.V161A 0.15 deleterious(0) benign(0.038) TCGA-58-8386-01 11 124135217 124135217 G T OR8G5 Missense_Mutation p.L165F 0.11 deleterious(0) probably_damaging(0.999) TCGA-58-8386-01 11 124412860 124412860 C T OR8B12 Missense_Mutation p.E231K 0.12 tolerated_low_confidence(0.1) benign(0.077) TCGA-58-8386-01 11 1267171 1267171 C T MUC5B Missense_Mutation p.P3021S 0.26 unknown(0) TCGA-58-8386-01 11 25004697 25004697 A G LUZP2 Missense_Mutation p.E208G 0.16 deleterious(0) probably_damaging(0.991) TCGA-58-8386-01 11 31312340 31312340 C T DCDC1 Missense_Mutation p.D272N 0.10 tolerated(0.12) possibly_damaging(0.864) TCGA-58-8386-01 11 46419115 46419115 G A AMBRA1 Missense_Mutation p.P1171L 0.26 deleterious_low_confidence(0) benign(0.01) TCGA-58-8386-01 11 46564889 46564889 A G AMBRA1 Silent p.R226R 0.23 TCGA-58-8386-01 11 48146600 48146600 C T PTPRJ Missense_Mutation p.P319S 0.28 tolerated(0.61) benign(0) TCGA-58-8386-01 11 5068526 5068526 C A OR52J3 Silent p.V257V 0.24 TCGA-58-8386-01 11 5247999 5247999 C A HBB Missense_Mutation p.R41S 0.13 deleterious(0.02) probably_damaging(0.995) TCGA-58-8386-01 11 57004371 57004371 C A APLNR Missense_Mutation p.M36I 0.08 tolerated(0.13) benign(0) TCGA-58-8386-01 11 58125985 58125985 G T OR5B17 Silent p.T186T 0.35 TCGA-58-8386-01 11 59814589 59814589 T C OOSP2 3'UTR 0.23 TCGA-58-8386-01 11 60152640 60152640 A G MS4A7 Missense_Mutation p.N76S 0.05 tolerated(0.66) benign(0.006) TCGA-58-8386-01 11 60183337 60183337 C A MS4A14 Missense_Mutation p.A332E 0.22 tolerated(0.1) benign(0.045) TCGA-58-8386-01 11 61017189 61017189 C A PGA5 Silent p.A274A 0.15 TCGA-58-8386-01 11 6129871 6129871 C A OR56B4 Missense_Mutation p.P288H 0.12 deleterious(0) probably_damaging(0.995) TCGA-58-8386-01 11 62760928 62760928 G - SLC22A8 Frame_Shift_Del p.L500Cfs*63 0.20 TCGA-58-8386-01 11 6291149 6291149 G A CCKBR Missense_Mutation p.M134I 0.27 deleterious(0) possibly_damaging(0.898) TCGA-58-8386-01 11 66026283 66026283 G C KLC2 Missense_Mutation p.G73A 0.10 deleterious(0.03) possibly_damaging(0.812) TCGA-58-8386-01 11 6622536 6622536 G C RRP8 Missense_Mutation p.L254V 0.09 deleterious(0.01) possibly_damaging(0.759) TCGA-58-8386-01 11 85347028 85347028 G T TMEM126B Intron 0.19 TCGA-58-8386-01 11 9009800 9009800 G C NRIP3 Silent p.L68L 0.20 TCGA-58-8386-01 12 100441849 100441849 T C UHRF1BP1L Missense_Mutation p.I1282V 0.35 tolerated(0.43) benign(0.002) TCGA-58-8386-01 12 101603281 101603281 A T SLC5A8 Missense_Mutation p.Y116N 0.29 tolerated(0.08) benign(0.41) TCGA-58-8386-01 12 102061509 102061509 G C MYBPC1 Splice_Site p.X779_splice 0.17 TCGA-58-8386-01 12 108168875 108168875 G A ASCL4 5'UTR 0.50 TCGA-58-8386-01 12 109577858 109577858 T A ACACB Silent p.T216T 0.14 TCGA-58-8386-01 12 111319091 111319091 A G CCDC63 Missense_Mutation p.R282G 0.09 deleterious(0.01) benign(0.158) TCGA-58-8386-01 12 118198881 118198881 C A KSR2 Silent p.A307A 0.15 TCGA-58-8386-01 12 123968730 123968730 C G RILPL1 Missense_Mutation p.R355P 0.18 deleterious(0) probably_damaging(0.947) TCGA-58-8386-01 12 14613949 14613949 C T ATF7IP Silent p.G893G 0.15 TCGA-58-8386-01 12 14942014 14942014 G A WBP11 Missense_Mutation p.P455S 0.08 deleterious_low_confidence(0.02) unknown(0) TCGA-58-8386-01 12 18443948 18443948 T C PIK3C2G Splice_Site p.X307_splice 0.22 TCGA-58-8386-01 12 32480714 32480714 A T BICD1 Missense_Mutation p.N442I 0.25 deleterious(0.03) probably_damaging(0.992) TCGA-58-8386-01 12 34179325 34179326 - T ALG10 Frame_Shift_Ins p.S302Ffs*9 0.10 TCGA-58-8386-01 12 40677933 40677933 C T LRRK2 Missense_Mutation p.T833I 0.27 tolerated(0.07) benign(0.005) TCGA-58-8386-01 12 40699666 40699666 A T LRRK2 Missense_Mutation p.N1286I 0.28 deleterious(0) probably_damaging(0.95) TCGA-58-8386-01 12 40728961 40728961 T A LRRK2 Splice_Site p.X1983_splice 0.28 TCGA-58-8386-01 12 41967633 41967633 G T PDZRN4 Missense_Mutation p.A1018S 0.20 tolerated(0.35) possibly_damaging(0.725) TCGA-58-8386-01 12 44917241 44917242 - C NELL2 Frame_Shift_Ins p.H661Afs*6 0.23 TCGA-58-8386-01 12 49441846 49441846 A C KMT2D Missense_Mutation p.C1380G 0.36 probably_damaging(0.998) TCGA-58-8386-01 12 55523973 55523973 G A OR9K2 Missense_Mutation p.A141T 0.15 deleterious(0.04) possibly_damaging(0.505) TCGA-58-8386-01 12 63964561 63964561 T C DPY19L2 Silent p.P659P 0.11 TCGA-58-8386-01 12 65471546 65471546 G T WIF1 Missense_Mutation p.T126K 0.19 tolerated(0.53) benign(0.27) TCGA-58-8386-01 12 78225390 78225390 C A NAV3 Missense_Mutation p.S50Y 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.506) TCGA-58-8386-01 12 78225391 78225391 C A NAV3 Silent p.S50S 0.10 TCGA-58-8386-01 12 78573404 78573404 A G NAV3 Missense_Mutation p.E1798G 0.19 deleterious(0) possibly_damaging(0.903) TCGA-58-8386-01 12 85449925 85449925 G A LRRIQ1 Missense_Mutation p.D452N 0.18 tolerated(0.48) benign(0.115) TCGA-58-8386-01 12 96408666 96408666 G C LTA4H Missense_Mutation p.L391V 0.16 deleterious(0) probably_damaging(0.922) TCGA-58-8386-01 13 23914414 23914414 G C SACS Missense_Mutation p.L1201V 0.36 benign(0.257) TCGA-58-8386-01 13 36744679 36744679 G T SOHLH2 Missense_Mutation p.P493T 0.25 deleterious(0) probably_damaging(0.999) TCGA-58-8386-01 13 88328570 88328570 C A SLITRK5 Silent p.T309T 0.29 TCGA-58-8386-01 13 92345640 92345640 C - GPC5 Frame_Shift_Del p.Y175* 0.20 TCGA-58-8386-01 14 20344839 20344839 C A OR4K2 Missense_Mutation p.P138H 0.13 tolerated(0.6) benign(0.005) TCGA-58-8386-01 14 21526433 21526433 C A RNASE8 Missense_Mutation p.P128T 0.19 tolerated(0.35) benign(0.011) TCGA-58-8386-01 14 23855261 23855261 T C MYH6 Missense_Mutation p.N1680S 0.27 tolerated(0.45) benign(0.088) TCGA-58-8386-01 14 29237816 29237816 C A FOXG1 Nonsense_Mutation p.S444* 0.13 TCGA-58-8386-01 14 31813154 31813154 T C HEATR5A Missense_Mutation p.H766R 0.21 deleterious(0) probably_damaging(1) TCGA-58-8386-01 14 42361139 42361139 C A LRFN5 Missense_Mutation p.T691K 0.23 tolerated_low_confidence(0.23) benign(0.012) TCGA-58-8386-01 14 44975613 44975613 C T FSCB Missense_Mutation p.S193N 0.27 deleterious(0.02) probably_damaging(0.943) TCGA-58-8386-01 14 64427543 64427543 G A SYNE2 Intron 0.35 TCGA-58-8386-01 14 64532297 64532297 C G SYNE2 Missense_Mutation p.L3454V 0.41 possibly_damaging(0.661) TCGA-58-8386-01 14 67382747 67382747 G A GPHN Silent p.T139T 0.10 TCGA-58-8386-01 14 68228237 68228237 G A ZFYVE26 Missense_Mutation p.S2145F 0.07 tolerated(0.17) benign(0.088) TCGA-58-8386-01 14 95109996 95109996 C A SERPINA13P RNA 0.17 TCGA-58-8386-01 15 20649496 20649496 G C HERC2P3 RNA 0.07 TCGA-58-8386-01 15 23931469 23931469 T C NDN Missense_Mutation p.E299G 0.15 deleterious(0) benign(0.29) TCGA-58-8386-01 15 31220764 31220764 G T FAN1 Missense_Mutation p.G833C 0.19 deleterious(0) probably_damaging(1) TCGA-58-8386-01 15 34646727 34646727 G T NUTM1 Nonsense_Mutation p.E358* 0.13 TCGA-58-8386-01 15 73593702 73593702 C T NEO1 Silent p.I1402I 0.15 TCGA-58-8386-01 15 74043395 74043395 C A C15orf59 Missense_Mutation p.R26L 0.16 deleterious(0) probably_damaging(0.998) TCGA-58-8386-01 15 74427285 74427285 C A ISLR2 Silent p.V730V 0.12 TCGA-58-8386-01 15 79750715 79750715 G - KIAA1024 Frame_Shift_Del p.G743Afs*7 0.12 TCGA-58-8386-01 16 1836800 1836800 C T NUBP2 Missense_Mutation p.R60C 0.23 deleterious(0) possibly_damaging(0.893) TCGA-58-8386-01 16 1996635 1996635 G C RPL3L Missense_Mutation p.I314M 0.23 deleterious(0) probably_damaging(0.99) TCGA-58-8386-01 16 20346809 20346809 C G UMOD Missense_Mutation p.S619T 0.20 tolerated(0.54) unknown(0) TCGA-58-8386-01 16 21065767 21065767 C G DNAH3 Missense_Mutation p.G1338A 0.06 deleterious(0) possibly_damaging(0.824) TCGA-58-8386-01 16 21726413 21726413 T C OTOA Silent p.S476S 0.11 TCGA-58-8386-01 16 2283926 2283926 G T E4F1 Missense_Mutation p.C437F 0.27 deleterious(0) probably_damaging(0.999) TCGA-58-8386-01 16 25266615 25266615 C T ZKSCAN2 Silent p.A166A 0.24 TCGA-58-8386-01 16 55734086 55734086 A G SLC6A2 Silent p.P542P 0.42 TCGA-58-8386-01 16 66422272 66422272 C T CDH5 Missense_Mutation p.T182I 0.13 deleterious(0) probably_damaging(0.981) TCGA-58-8386-01 16 68055548 68055548 G A DDX28 Missense_Mutation p.R520C 0.10 deleterious(0.02) benign(0.384) TCGA-58-8386-01 16 75513394 75513394 C T CHST6 Silent p.L111L 0.33 TCGA-58-8386-01 16 8732989 8732989 G A METTL22 Missense_Mutation p.A248T 0.13 tolerated(0.35) benign(0.034) TCGA-58-8386-01 17 10312608 10312608 T G MYH8 Missense_Mutation p.S629R 0.38 tolerated(0.07) benign(0.121) TCGA-58-8386-01 17 10427136 10427136 C T MYH2 Missense_Mutation p.M1747I 0.33 tolerated(0.08) benign(0.003) TCGA-58-8386-01 17 29560175 29560175 C T NF1 Nonsense_Mutation p.Q1218* 0.35 TCGA-58-8386-01 17 3336391 3336391 T A OR1E2 Missense_Mutation p.T249S 0.25 deleterious(0) possibly_damaging(0.483) TCGA-58-8386-01 17 34073076 34073076 A G GAS2L2 Silent p.G480G 0.29 TCGA-58-8386-01 17 3936226 3936226 G A ZZEF1 Missense_Mutation p.R2219C 0.40 tolerated(0.13) benign(0.001) TCGA-58-8386-01 17 39502760 39502760 C T KRT33A Missense_Mutation p.R346Q 0.29 deleterious(0.02) benign(0.292) TCGA-58-8386-01 17 39767896 39767896 C G KRT16 Missense_Mutation p.R203S 0.20 deleterious(0) probably_damaging(0.981) TCGA-58-8386-01 17 43923845 43923845 T C SPPL2C Missense_Mutation p.F525L 0.27 deleterious(0) probably_damaging(0.999) TCGA-58-8386-01 17 48618858 48618858 C G EPN3 Missense_Mutation p.S463C 0.04 tolerated(0.05) benign(0.009) TCGA-58-8386-01 17 61972723 61972723 T A CSH1 Intron 0.57 TCGA-58-8386-01 17 73919599 73919599 G A FBF1 Silent p.D349D 0.32 TCGA-58-8386-01 17 7577120 7577120 C A TP53 Missense_Mutation p.R273L 0.40 deleterious(0) probably_damaging(0.993) TCGA-58-8386-01 17 79225221 79225221 C A SLC38A10 Intron 0.12 TCGA-58-8386-01 18 2750445 2750445 G T SMCHD1 Missense_Mutation p.V1369F 0.22 tolerated(0.11) benign(0.396) TCGA-58-8386-01 18 29116190 29116190 C G DSG2 Silent p.G483G 0.29 TCGA-58-8386-01 18 321742 321742 C A COLEC12 Missense_Mutation p.G710V 0.26 deleterious(0) unknown(0) TCGA-58-8386-01 18 50866277 50866277 G T DCC Nonsense_Mutation p.E787* 0.29 TCGA-58-8386-01 18 56587752 56587752 G A ZNF532 Missense_Mutation p.D745N 0.42 deleterious(0.03) probably_damaging(1) TCGA-58-8386-01 18 63547738 63547738 G T CDH7 Nonsense_Mutation p.E656* 0.35 TCGA-58-8386-01 18 67508650 67508650 C A DOK6 3'UTR 0.23 TCGA-58-8386-01 18 7955379 7955379 G T PTPRM Missense_Mutation p.G367C 0.10 deleterious(0) probably_damaging(1) TCGA-58-8386-01 19 11231043 11231043 C T LDLR Intron 0.15 TCGA-58-8386-01 19 11492631 11492631 G C EPOR Missense_Mutation p.H134Q 0.09 tolerated(0.19) benign(0.19) TCGA-58-8386-01 19 19338646 19338646 C A NCAN Silent p.V739V 0.25 TCGA-58-8386-01 19 2271493 2271493 G T OAZ1 Missense_Mutation p.Q85H 0.34 deleterious(0.04) possibly_damaging(0.707) TCGA-58-8386-01 19 30165050 30165050 A G PLEKHF1 Missense_Mutation p.I102V 0.08 tolerated(0.12) possibly_damaging(0.802) TCGA-58-8386-01 19 38976718 38976718 G T RYR1 Missense_Mutation p.R1808L 0.31 possibly_damaging(0.582) TCGA-58-8386-01 19 41056145 41056145 C T SPTBN4 Missense_Mutation p.A1529V 0.36 deleterious(0.03) benign(0.113) TCGA-58-8386-01 19 4292795 4292795 C T TMIGD2 Missense_Mutation p.R217K 0.12 tolerated(1) benign(0) TCGA-58-8386-01 19 45015147 45015147 G A CEACAM20 RNA 0.30 TCGA-58-8386-01 19 54200869 54200869 G - MIR525 RNA 0.12 TCGA-58-8386-01 19 54314185 54314185 C A NLRP12 Missense_Mutation p.R243I 0.38 deleterious(0) probably_damaging(0.984) TCGA-58-8386-01 19 56515090 56515090 C T NLRP5 Missense_Mutation p.T24I 0.09 tolerated_low_confidence(0.21) benign(0) TCGA-58-8386-01 19 746419 746420 - G PALM Frame_Shift_Ins p.A259Gfs*53 0.18 TCGA-58-8386-01 19 9071567 9071567 G T MUC16 Silent p.S5293S 0.49 TCGA-58-8386-01 19 9087796 9087796 G T MUC16 Missense_Mutation p.T1340K 0.43 unknown(0) TCGA-58-8386-01 1 100573524 100573524 G A SASS6 Nonsense_Mutation p.R300* 0.14 TCGA-58-8386-01 1 12061881 12061883 GAG - MFN2 In_Frame_Del p.R344del 0.10 TCGA-58-8386-01 1 144825468 144825468 A C NBPF9 Missense_Mutation p.S473R 0.09 tolerated(0.67) benign(0.01) TCGA-58-8386-01 1 144859826 144859826 G C PDE4DIP Missense_Mutation p.S2086R 0.06 tolerated(0.5) possibly_damaging(0.568) TCGA-58-8386-01 1 152193025 152193025 G A HRNR Silent p.G360G 0.33 TCGA-58-8386-01 1 163039270 163039270 A T RGS4 Missense_Mutation p.N96I 0.49 deleterious_low_confidence(0) benign(0.02) TCGA-58-8386-01 1 167095304 167095304 G A DUSP27 Silent p.L312L 0.62 TCGA-58-8386-01 1 17575691 17575691 T C PADI3 Missense_Mutation p.V20A 0.09 deleterious(0.01) probably_damaging(0.99) TCGA-58-8386-01 1 177906596 177906596 A G SEC16B Silent p.P752P 0.18 TCGA-58-8386-01 1 181732550 181732550 C A CACNA1E Missense_Mutation p.N1566K 0.42 tolerated(0.29) possibly_damaging(0.728) TCGA-58-8386-01 1 198661502 198661502 G T PTPRC Nonsense_Mutation p.G34* 0.29 TCGA-58-8386-01 1 209969801 209969801 T C IRF6 Missense_Mutation p.R91G 0.40 deleterious(0) probably_damaging(1) TCGA-58-8386-01 1 222919922 222919922 A T FAM177B Missense_Mutation p.E12V 0.13 deleterious(0.01) possibly_damaging(0.663) TCGA-58-8386-01 1 228879529 228879529 G C RHOU 3'UTR 0.38 TCGA-58-8386-01 1 24408688 24408688 G T MYOM3 Intron 0.20 TCGA-58-8386-01 1 24408689 24408689 G T MYOM3 Intron 0.20 TCGA-58-8386-01 1 245766026 245766026 A G KIF26B Missense_Mutation p.N500D 0.34 tolerated(0.1) unknown(0) TCGA-58-8386-01 1 248756588 248756588 G A OR2T10 Missense_Mutation p.P161L 0.41 deleterious(0.03) benign(0.049) TCGA-58-8386-01 1 248813751 248813751 C A OR2T27 Silent p.V145V 0.31 TCGA-58-8386-01 1 34208987 34208987 T A CSMD2 Silent p.S649S 0.13 TCGA-58-8386-01 1 36026197 36026197 C T NCDN Missense_Mutation p.R149C 0.16 deleterious(0.03) possibly_damaging(0.787) TCGA-58-8386-01 1 39906727 39906727 T C MACF1 Missense_Mutation p.I4108T 0.14 benign(0.037) TCGA-58-8386-01 1 43308873 43308873 C G ERMAP Silent p.A466A 0.12 TCGA-58-8386-01 1 45477871 45477871 G A UROD 5'UTR 0.32 TCGA-58-8386-01 1 75055517 75055517 C T C1orf173 Silent p.P658P 0.19 TCGA-58-8386-01 1 75684174 75684174 C G SLC44A5 Splice_Site p.X510_splice 0.28 TCGA-58-8386-01 1 84403630 84403630 T A TTLL7 Missense_Mutation p.T265S 0.16 tolerated(0.11) benign(0.223) TCGA-58-8386-01 1 901911 901911 C A PLEKHN1 5'UTR 0.15 TCGA-58-8386-01 1 91728052 91728052 C A HFM1 Nonsense_Mutation p.G1358* 0.22 TCGA-58-8386-01 20 1161429 1161429 C T TMEM74B 3'UTR 0.31 TCGA-58-8386-01 20 16410562 16410563 - A KIF16B Frame_Shift_Ins p.L456Ffs*6 0.25 TCGA-58-8386-01 20 29960758 29960758 G T DEFB118 Missense_Mutation p.A53S 0.25 tolerated(0.06) benign(0.058) TCGA-58-8386-01 20 31967440 31967440 C T CDK5RAP1 Missense_Mutation p.E312K 0.19 tolerated(0.09) benign(0.209) TCGA-58-8386-01 20 37191300 37191300 G T RALGAPB Missense_Mutation p.W1219C 0.31 deleterious(0) probably_damaging(0.999) TCGA-58-8386-01 20 3835209 3835209 G A MAVS 5'UTR 0.40 TCGA-58-8386-01 20 41400125 41400125 G C PTPRT Missense_Mutation p.Q212E 0.08 tolerated(0.07) benign(0.001) TCGA-58-8386-01 20 42143669 42143669 C G L3MBTL1 Missense_Mutation p.P153A 0.20 tolerated(0.14) benign(0.011) TCGA-58-8386-01 20 42788492 42788492 A T JPH2 Missense_Mutation p.L312H 0.08 deleterious(0) probably_damaging(1) TCGA-58-8386-01 20 49236543 49236543 T A FAM65C Missense_Mutation p.E79D 0.21 tolerated(0.1) benign(0.106) TCGA-58-8386-01 20 56186782 56186782 C A ZBP1 Splice_Site p.X292_splice 0.35 TCGA-58-8386-01 21 31692086 31692086 T A KRTAP26-1 Missense_Mutation p.R90W 0.29 deleterious(0) probably_damaging(0.943) TCGA-58-8386-01 21 42647404 42647410 TGTGTCC - BACE2 Frame_Shift_Del p.V471Mfs*4 0.20 TCGA-58-8386-01 21 44299658 44299658 G A WDR4 5'UTR 0.14 TCGA-58-8386-01 22 22677052 22677052 C G IGLV1-51 Missense_Mutation p.P27R 0.44 tolerated(0.05) benign(0.135) TCGA-58-8386-01 22 23237967 23237967 C T IGLL5 3'UTR 0.50 TCGA-58-8386-01 22 30733025 30733025 C A SF3A1 Missense_Mutation p.R699L 0.44 tolerated(0.11) benign(0.009) TCGA-58-8386-01 22 37699378 37699378 G T CYTH4 Nonsense_Mutation p.E211* 0.52 TCGA-58-8386-01 22 46760094 46760094 G A CELSR1 Missense_Mutation p.T2945M 0.13 deleterious(0.04) benign(0.012) TCGA-58-8386-01 22 50356510 50356510 C G PIM3 Missense_Mutation p.P264A 0.19 tolerated(0.29) benign(0) TCGA-58-8386-01 2 108868915 108868915 C T SULT1C3 Silent p.F89F 0.22 TCGA-58-8386-01 2 113074132 113074132 G T ZC3H6 Missense_Mutation p.C278F 0.24 deleterious(0) probably_damaging(0.999) TCGA-58-8386-01 2 141232729 141232729 C A LRP1B Missense_Mutation p.M3201I 0.24 benign(0.019) TCGA-58-8386-01 2 166179929 166179929 T - SCN2A Frame_Shift_Del p.H645Qfs*36 0.20 TCGA-58-8386-01 2 178483163 178483163 C T TTC30A Silent p.L89L 0.32 TCGA-58-8386-01 2 179469759 179469759 T C TTN Missense_Mutation p.N18049D 0.13 TCGA-58-8386-01 2 188331658 188331659 - A TFPI 3'UTR 0.18 TCGA-58-8386-01 2 196599705 196599705 T C SLC39A10 Silent p.F812F 0.25 TCGA-58-8386-01 2 196621009 196621009 C G DNAH7 Missense_Mutation p.G3812R 0.08 deleterious(0) probably_damaging(0.998) TCGA-58-8386-01 2 196740535 196740535 A T DNAH7 Silent p.A2050A 0.28 TCGA-58-8386-01 2 202545637 202545637 G A MPP4 Missense_Mutation p.L285F 0.35 tolerated(0.1) benign(0.111) TCGA-58-8386-01 2 220312964 220312964 G T SPEG Missense_Mutation p.G362W 0.19 probably_damaging(0.975) TCGA-58-8386-01 2 233925277 233925277 T C INPP5D Missense_Mutation p.V30A 0.34 deleterious(0) probably_damaging(1) TCGA-58-8386-01 2 234591302 234591302 C T UGT1A7 Missense_Mutation p.T240M 0.14 deleterious(0) probably_damaging(0.958) TCGA-58-8386-01 2 24111218 24111218 A G ATAD2B Splice_Site p.X140_splice 0.14 TCGA-58-8386-01 2 241622029 241622029 G T AQP12B Missense_Mutation p.L76I 0.20 deleterious(0.02) benign(0.413) TCGA-58-8386-01 2 28826849 28826849 G A PLB1 Missense_Mutation p.V931I 0.17 tolerated(0.06) possibly_damaging(0.753) TCGA-58-8386-01 2 54891766 54891766 G A SPTBN1 Silent p.Q2199Q 0.32 TCGA-58-8386-01 2 55254239 55254239 C T RTN4 Silent p.E332E 0.33 TCGA-58-8386-01 2 63264768 63264768 C T EHBP1 Silent p.L1139L 0.08 TCGA-58-8386-01 2 71753421 71753421 C A DYSF Silent p.A407A 0.12 TCGA-58-8386-01 2 71795214 71795214 T C DYSF Splice_Site p.X899_splice 0.26 TCGA-58-8386-01 2 8871873 8871873 T C KIDINS220 Silent p.L1431L 0.15 TCGA-58-8386-01 2 89986378 89986378 G T IGKV2D-29 Silent p.G9G 0.12 TCGA-58-8386-01 2 96964439 96964439 G A SNRNP200 Missense_Mutation p.T295M 0.17 tolerated(0.05) possibly_damaging(0.608) TCGA-58-8386-01 2 98340771 98340771 C A ZAP70 Missense_Mutation p.P91H 0.20 tolerated(0.06) benign(0.24) TCGA-58-8386-01 3 100467386 100467386 C G TFG 3'UTR 0.07 TCGA-58-8386-01 3 101476686 101476686 G C CEP97 Silent p.L412L 0.13 TCGA-58-8386-01 3 105258897 105258897 G A ALCAM Missense_Mutation p.C270Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-58-8386-01 3 105258898 105258898 C A ALCAM Nonsense_Mutation p.C270* 0.10 TCGA-58-8386-01 3 111325637 111325637 C A CD96 Missense_Mutation p.A409E 0.24 deleterious(0.01) benign(0.01) TCGA-58-8386-01 3 113346554 113346554 G A SIDT1 Silent p.%3D 0.17 TCGA-58-8386-01 3 121413347 121413347 T C GOLGB1 Missense_Mutation p.N2008S 0.19 benign(0.004) TCGA-58-8386-01 3 147106531 147106531 T C ZIC4 3'UTR 0.16 TCGA-58-8386-01 3 164764714 164764714 C A SI Missense_Mutation p.W601L 0.17 deleterious(0) probably_damaging(0.992) TCGA-58-8386-01 3 164792432 164792432 G T SI Missense_Mutation p.P48T 0.16 tolerated(0.05) benign(0) TCGA-58-8386-01 3 167728197 167728197 T C GOLIM4 Missense_Mutation p.K651E 0.05 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-58-8386-01 3 170858287 170858287 T C TNIK Silent p.R411R 0.12 TCGA-58-8386-01 3 190362094 190362096 TAG - IL1RAP In_Frame_Del p.V372del 0.20 TCGA-58-8386-01 3 93593168 93593168 A G PROS1 Missense_Mutation p.L651P 0.10 deleterious(0) probably_damaging(0.993) TCGA-58-8386-01 4 104579544 104579544 C A TACR3 Missense_Mutation p.D189Y 0.26 tolerated(0.11) possibly_damaging(0.783) TCGA-58-8386-01 4 110972456 110972456 G C ELOVL6 3'UTR 0.48 TCGA-58-8386-01 4 122774239 122774239 T C BBS7 Missense_Mutation p.I241V 0.12 tolerated(0.48) benign(0.003) TCGA-58-8386-01 4 141317107 141317107 C T CLGN Missense_Mutation p.G339R 0.16 deleterious(0) probably_damaging(1) TCGA-58-8386-01 4 153692100 153692100 T G TIGD4 Missense_Mutation p.K19N 0.18 deleterious(0.01) probably_damaging(0.967) TCGA-58-8386-01 4 187539888 187539889 - T FAT1 Frame_Shift_Ins p.V2618Sfs*5 0.20 TCGA-58-8386-01 4 187630524 187630524 G A FAT1 Missense_Mutation p.S153L 0.12 possibly_damaging(0.573) TCGA-58-8386-01 4 1993362 1993362 C G NELFA Missense_Mutation p.L108F 0.24 deleterious(0.01) probably_damaging(0.979) TCGA-58-8386-01 4 22749681 22749681 C A GBA3 Missense_Mutation p.P350Q 0.14 deleterious(0) probably_damaging(0.995) TCGA-58-8386-01 4 3235036 3235036 G A HTT Silent p.P2804P 0.14 TCGA-58-8386-01 4 44450566 44450566 C - KCTD8 5'UTR 0.26 TCGA-58-8386-01 4 46067446 46067446 G A GABRG1 Silent p.H159H 0.24 TCGA-58-8386-01 4 47538558 47538558 T C ATP10D Missense_Mutation p.W374R 0.21 deleterious(0) probably_damaging(0.993) TCGA-58-8386-01 4 515024 515024 A C PIGG Missense_Mutation p.I432L 0.14 tolerated(0.49) benign(0.001) TCGA-58-8386-01 4 54256796 54256796 G A FIP1L1 Splice_Site p.X169_splice 0.22 TCGA-58-8386-01 4 62801755 62801755 G T LPHN3 Missense_Mutation p.G736V 0.28 deleterious(0.02) benign(0.139) TCGA-58-8386-01 4 77305440 77305440 C T CCDC158 Missense_Mutation p.R176Q 0.28 tolerated(0.06) probably_damaging(0.975) TCGA-58-8386-01 4 78808409 78808409 A G MRPL1 Silent p.G174G 0.25 TCGA-58-8386-01 4 81865971 81865971 A G C4orf22 Missense_Mutation p.N179D 0.24 deleterious(0.01) possibly_damaging(0.596) TCGA-58-8386-01 4 85762391 85762391 C G WDFY3 Missense_Mutation p.Q110H 0.06 deleterious(0.01) benign(0.168) TCGA-58-8386-01 4 90169674 90169674 T C GPRIN3 Missense_Mutation p.T530A 0.19 tolerated(0.24) benign(0.018) TCGA-58-8386-01 4 93511359 93511359 G C GRID2 Missense_Mutation p.E56Q 0.13 tolerated(0.05) possibly_damaging(0.9) TCGA-58-8386-01 5 1057609 1057609 G C SLC12A7 Missense_Mutation p.F1001L 0.29 tolerated(0.15) benign(0.027) TCGA-58-8386-01 5 138240099 138240099 C T CTNNA1 Missense_Mutation p.S453F 0.32 deleterious(0) possibly_damaging(0.74) TCGA-58-8386-01 5 140175920 140175920 G T PCDHA2 Missense_Mutation p.Q457H 0.35 deleterious_low_confidence(0.02) benign(0.274) TCGA-58-8386-01 5 140603558 140603558 G T PCDHB14 Missense_Mutation p.D161Y 0.31 deleterious_low_confidence(0) probably_damaging(1) TCGA-58-8386-01 5 140682444 140682444 C A SLC25A2 3'UTR 0.31 TCGA-58-8386-01 5 140798826 140798826 C T PCDHGB7 Missense_Mutation p.P467L 0.10 deleterious(0.02) possibly_damaging(0.801) TCGA-58-8386-01 5 141242731 141242731 C A PCDH1 Intron 0.32 TCGA-58-8386-01 5 156592913 156592913 C G FAM71B Silent p.L89L 0.27 TCGA-58-8386-01 5 33549443 33549443 A G ADAMTS12 Missense_Mutation p.C1391R 0.12 deleterious(0) probably_damaging(0.991) TCGA-58-8386-01 5 5187909 5187909 A C ADAMTS16 Silent p.L345L 0.07 TCGA-58-8386-01 5 74109746 74109746 G A FAM169A Missense_Mutation p.H197Y 0.32 tolerated(1) benign(0.212) TCGA-58-8386-01 5 82648950 82648950 G A XRCC4 Silent p.R300R 0.36 TCGA-58-8386-01 5 9043061 9043061 T A SEMA5A Missense_Mutation p.K1058M 0.18 deleterious(0.02) probably_damaging(0.979) TCGA-58-8386-01 5 96328800 96328800 C A LNPEP Missense_Mutation p.Q405K 0.35 deleterious(0.01) benign(0.217) TCGA-58-8386-01 6 106968784 106968784 G T AIM1 Missense_Mutation p.R826I 0.04 deleterious(0) probably_damaging(0.999) TCGA-58-8386-01 6 106968790 106968790 G A AIM1 Missense_Mutation p.R828K 0.05 deleterious(0) probably_damaging(0.996) TCGA-58-8386-01 6 147124350 147124350 A G ADGB Intron 0.48 TCGA-58-8386-01 6 158919738 158919738 G T TULP4 Silent p.R636R 0.51 TCGA-58-8386-01 6 167791543 167791543 G C TCP10 Nonsense_Mutation p.S106* 0.10 TCGA-58-8386-01 6 168439371 168439371 C A KIF25 Silent p.A152A 0.47 TCGA-58-8386-01 6 31631658 31631658 G A GPANK1 Missense_Mutation p.H200Y 0.38 tolerated(0.12) possibly_damaging(0.677) TCGA-58-8386-01 6 34827172 34827172 C G UHRF1BP1 Missense_Mutation p.N1013K 0.23 deleterious(0.01) possibly_damaging(0.611) TCGA-58-8386-01 6 37281642 37281642 G A TBC1D22B Silent p.L380L 0.24 TCGA-58-8386-01 6 43306845 43306845 C G ZNF318 Missense_Mutation p.E1631Q 0.06 benign(0.002) TCGA-58-8386-01 6 52878582 52878582 G T ICK Missense_Mutation p.P344T 0.07 tolerated(0.13) benign(0.007) TCGA-58-8386-01 6 7298184 7298184 C G SSR1 Missense_Mutation p.G224A 0.37 tolerated(0.23) possibly_damaging(0.585) TCGA-58-8386-01 7 102825908 102825908 T C DPY19L2P2 RNA 0.54 TCGA-58-8386-01 7 102963039 102963039 C A DNAJC2 Missense_Mutation p.K284N 0.10 deleterious(0.01) possibly_damaging(0.522) TCGA-58-8386-01 7 104752865 104752865 G A KMT2E Silent p.S1554S 0.68 TCGA-58-8386-01 7 126249419 126249419 T C GRM8 Silent p.L497L 0.18 TCGA-58-8386-01 7 134878002 134878002 G A WDR91 Missense_Mutation p.T547M 0.09 tolerated(0.32) benign(0.102) TCGA-58-8386-01 7 137150724 137150724 C A DGKI Missense_Mutation p.D856Y 0.24 deleterious(0) possibly_damaging(0.851) TCGA-58-8386-01 7 141408711 141408711 A G WEE2 Silent p.A51A 0.20 TCGA-58-8386-01 7 141896514 141896514 C G RP11-1220K2.2 Missense_Mutation p.I1510M 0.17 probably_damaging(1) TCGA-58-8386-01 7 141896515 141896515 T C RP11-1220K2.2 Missense_Mutation p.C1511R 0.17 probably_damaging(1) TCGA-58-8386-01 7 144098663 144098663 G A NOBOX Missense_Mutation p.A107V 0.17 tolerated(0.08) benign(0.028) TCGA-58-8386-01 7 149255890 149255890 G A ZNF767 RNA 0.12 TCGA-58-8386-01 7 27141910 27141910 G T HOXA2 Silent p.G70G 0.38 TCGA-58-8386-01 7 37953878 37953878 G T SFRP4 Silent p.R177R 0.29 TCGA-58-8386-01 7 50514133 50514133 C T FIGNL1 Missense_Mutation p.G285S 0.11 tolerated(0.25) benign(0.004) TCGA-58-8386-01 7 57188398 57188398 T C ZNF479 Missense_Mutation p.R242G 0.34 deleterious(0.01) benign(0.019) TCGA-58-8386-01 7 82996872 82996872 C A SEMA3E 3'UTR 0.07 TCGA-58-8386-01 7 92131246 92131246 T C PEX1 Missense_Mutation p.I792V 0.06 tolerated(0.54) benign(0.001) TCGA-58-8386-01 8 113303793 113303793 C G CSMD3 Missense_Mutation p.V2974L 0.09 tolerated(0.12) possibly_damaging(0.59) TCGA-58-8386-01 8 124266034 124266034 C A ZHX1 Missense_Mutation p.G718V 0.37 deleterious(0) possibly_damaging(0.905) TCGA-58-8386-01 8 124266035 124266035 C A ZHX1 Nonsense_Mutation p.G718* 0.37 TCGA-58-8386-01 8 124696877 124696877 C G ANXA13 Missense_Mutation p.L309F 0.08 deleterious(0) probably_damaging(0.999) TCGA-58-8386-01 8 30916727 30916727 C T WRN Missense_Mutation p.S52F 0.10 deleterious(0.01) benign(0.266) TCGA-58-8386-01 8 49986640 49986640 T G C8orf22 Missense_Mutation p.S26R 0.04 deleterious(0.02) benign(0.387) TCGA-58-8386-01 8 77767262 77767262 G T ZFHX4 Missense_Mutation p.G2702V 0.13 probably_damaging(0.999) TCGA-58-8386-01 8 92007895 92007895 A G TMEM55A 3'UTR 0.07 TCGA-58-8386-01 8 99015973 99015973 G A MATN2 Missense_Mutation p.R430H 0.38 tolerated(0.06) benign(0.238) TCGA-58-8386-01 9 101777716 101777716 C A COL15A1 Missense_Mutation p.D457E 0.23 tolerated_low_confidence(1) benign(0) TCGA-58-8386-01 9 107379766 107379766 G A OR13C9 Silent p.T240T 0.25 TCGA-58-8386-01 9 107456918 107456918 G A OR13D1 Silent p.L72L 0.20 TCGA-58-8386-01 9 125487093 125487093 C T OR1L4 Silent p.A275A 0.14 TCGA-58-8386-01 9 127652728 127652728 G A GOLGA1 Silent p.S479S 0.16 TCGA-58-8386-01 9 133374898 133374898 C G ASS1 Missense_Mutation p.N378K 0.06 deleterious(0.03) benign(0.005) TCGA-58-8386-01 9 140137531 140137531 C G TUBB4B Silent p.P287P 0.33 TCGA-58-8386-01 9 140351884 140351884 C A NSMF Missense_Mutation p.R201S 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.557) TCGA-58-8386-01 9 32488838 32488838 T A DDX58 Nonsense_Mutation p.K283* 0.32 TCGA-58-8386-01 9 37518289 37518289 C A FBXO10 Missense_Mutation p.G783W 0.17 deleterious(0) probably_damaging(1) TCGA-58-8386-01 9 40774811 40774811 C A ZNF658 Missense_Mutation p.S155I 0.21 tolerated(0.32) benign(0.052) TCGA-58-8386-01 9 79875008 79875008 G C VPS13A Missense_Mutation p.K765N 0.28 deleterious(0) possibly_damaging(0.846) TCGA-58-8386-01 9 88292474 88292474 A C AGTPBP1 Missense_Mutation p.L105V 0.26 tolerated(0.08) benign(0.106) TCGA-58-8386-01 X 100086609 100086609 G C CSTF2 Missense_Mutation p.G332A 0.35 deleterious(0.01) benign(0.446) TCGA-58-8386-01 X 105190398 105190398 G A NRK Missense_Mutation p.G1433E 0.55 deleterious(0.02) probably_damaging(0.999) TCGA-58-8386-01 X 110491221 110491221 C T CAPN6 Splice_Site p.X495_splice 0.18 TCGA-58-8386-01 X 127185181 127185181 A G ACTRT1 Silent p.D335D 0.21 TCGA-58-8386-01 X 142718099 142718099 G T SLITRK4 Missense_Mutation p.P276T 0.47 tolerated(0.33) benign(0.255) TCGA-58-8386-01 X 142967499 142967499 C A UBE2NL Silent p.A99A 0.10 TCGA-58-8386-01 X 150890373 150890373 A T FATE1 Splice_Site p.X114_splice 0.44 TCGA-58-8386-01 X 153223244 153223244 G T HCFC1 Missense_Mutation p.Q708K 0.49 deleterious(0.04) possibly_damaging(0.831) TCGA-58-8386-01 X 153593775 153593775 G T FLNA Missense_Mutation p.F503L 0.44 deleterious(0.02) probably_damaging(0.915) TCGA-58-8386-01 X 1752171 1752171 G A ASMT Missense_Mutation p.D259N 0.25 tolerated(0.27) benign(0.001) TCGA-58-8386-01 X 30254076 30254076 G C MAGEB3 Missense_Mutation p.R12P 0.54 tolerated(0.1) benign(0.015) TCGA-58-8386-01 X 30269432 30269433 GA - MAGEB1 Frame_Shift_Del p.R275Sfs*4 0.41 TCGA-58-8386-01 X 3229362 3229362 G A MXRA5 Silent p.S2294S 0.49 TCGA-58-8386-01 X 41198321 41198321 C T DDX3X Nonsense_Mutation p.R46* 0.59 TCGA-58-8386-01 X 49076100 49076100 T C CACNA1F Missense_Mutation p.T857A 0.50 deleterious(0) benign(0.064) TCGA-58-8386-01 X 70779443 70779443 C G OGT Missense_Mutation p.F589L 0.44 deleterious(0.01) possibly_damaging(0.77) TCGA-58-8386-01 X 71813090 71813090 G A PHKA1 Missense_Mutation p.S1036F 0.18 deleterious(0.01) benign(0.013) TCGA-58-8387-01 10 103792870 103792870 C T C10orf76 Silent p.K73K 0.16 TCGA-58-8387-01 10 104436669 104436669 G A ARL3 Silent p.V177V 0.16 TCGA-58-8387-01 10 11299815 11299815 G C CELF2 Missense_Mutation p.G173A 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-58-8387-01 10 118306924 118306924 C A PNLIP Missense_Mutation p.F55L 0.18 deleterious(0.03) benign(0.401) TCGA-58-8387-01 10 133946921 133946921 G C JAKMIP3 Missense_Mutation p.D247H 0.25 deleterious(0) probably_damaging(0.997) TCGA-58-8387-01 10 134219454 134219454 G A PWWP2B Missense_Mutation p.D484N 0.10 deleterious(0) possibly_damaging(0.681) TCGA-58-8387-01 10 13653645 13653645 G C PRPF18 Missense_Mutation p.D181H 0.21 deleterious(0.03) benign(0.133) TCGA-58-8387-01 10 16866986 16866986 A C CUBN Silent p.T3620T 0.14 TCGA-58-8387-01 10 54076436 54076436 A T DKK1 Missense_Mutation p.R224W 0.15 deleterious(0) probably_damaging(0.982) TCGA-58-8387-01 10 77542762 77542762 A G C10orf11 Missense_Mutation p.N10S 0.22 deleterious(0.05) possibly_damaging(0.818) TCGA-58-8387-01 10 90661479 90661479 T G STAMBPL1 Missense_Mutation p.F5C 0.20 tolerated_low_confidence(0.12) possibly_damaging(0.471) TCGA-58-8387-01 10 92508927 92508927 C T HTR7 Missense_Mutation p.E322K 0.12 deleterious(0.02) probably_damaging(0.928) TCGA-58-8387-01 11 120186076 120186076 C T POU2F3 Missense_Mutation p.P361S 0.19 tolerated(0.26) possibly_damaging(0.547) TCGA-58-8387-01 11 14280845 14280845 G A RP11-21L19.1 3'Flank 0.31 TCGA-58-8387-01 11 17527489 17527489 C A USH1C Missense_Mutation p.C674F 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.77) TCGA-58-8387-01 11 18301359 18301359 G A HPS5 3'UTR 0.23 TCGA-58-8387-01 11 279849 279849 C G NLRP6 Missense_Mutation p.S109C 0.33 tolerated(0.16) possibly_damaging(0.49) TCGA-58-8387-01 11 32637601 32637601 A T CCDC73 Nonsense_Mutation p.Y420* 0.26 TCGA-58-8387-01 11 48267159 48267159 C T OR4X2 Silent p.H168H 0.16 TCGA-58-8387-01 11 49831737 49831737 C A RP11-707M1.1 RNA 0.13 TCGA-58-8387-01 11 49831738 49831738 C A RP11-707M1.1 RNA 0.12 TCGA-58-8387-01 11 534285 534285 C A HRAS Missense_Mutation p.G13V 0.24 deleterious(0.02) probably_damaging(0.989) TCGA-58-8387-01 11 56309946 56309946 G A OR5M11 Missense_Mutation p.T263I 0.27 deleterious(0.03) benign(0.248) TCGA-58-8387-01 11 58391918 58391918 C G CNTF Missense_Mutation p.L176V 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-58-8387-01 11 62494157 62494157 C A HNRNPUL2 Nonsense_Mutation p.E158* 0.26 TCGA-58-8387-01 11 63143136 63143136 C A SLC22A9 Silent p.R284R 0.22 TCGA-58-8387-01 11 64603036 64603036 C T CDC42BPG Missense_Mutation p.E606K 0.23 tolerated(0.17) benign(0.333) TCGA-58-8387-01 12 104720144 104720144 G C TXNRD1 Missense_Mutation p.R443T 0.12 deleterious(0) probably_damaging(1) TCGA-58-8387-01 12 109294441 109294441 A C DAO 3'UTR 0.17 TCGA-58-8387-01 12 113533170 113533170 G T DTX1 Missense_Mutation p.R530I 0.15 deleterious(0) probably_damaging(0.998) TCGA-58-8387-01 12 119909847 119909847 G A CCDC60 Silent p.L73L 0.20 TCGA-58-8387-01 12 15784526 15784526 G T EPS8 Missense_Mutation p.P632T 0.24 tolerated(0.13) probably_damaging(0.999) TCGA-58-8387-01 12 21196381 21196381 C A SLCO1B7 Missense_Mutation p.L234I 0.13 deleterious(0) benign(0.071) TCGA-58-8387-01 12 24736457 24736457 C T LINC00477 RNA 0.37 TCGA-58-8387-01 12 54378996 54378996 C T HOXC10 5'UTR 0.22 TCGA-58-8387-01 12 56575522 56575522 C A SMARCC2 Missense_Mutation p.R269L 0.16 deleterious(0.01) benign(0.25) TCGA-58-8387-01 12 57457058 57457058 C T TMEM194A Missense_Mutation p.R275Q 0.17 deleterious(0.02) probably_damaging(0.968) TCGA-58-8387-01 12 57559681 57559681 G A LRP1 Missense_Mutation p.G875E 0.10 probably_damaging(1) TCGA-58-8387-01 12 6643961 6643961 T C GAPDH Intron 0.20 TCGA-58-8387-01 12 71029681 71029681 G C PTPRB Missense_Mutation p.S74C 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.698) TCGA-58-8387-01 12 78362357 78362357 C T NAV3 Silent p.Y182Y 0.18 TCGA-58-8387-01 13 24895492 24895492 T A AL359736.1 Missense_Mutation p.R25S 0.27 tolerated(0.61) benign(0.005) TCGA-58-8387-01 13 25458503 25458503 G T CENPJ Missense_Mutation p.F1192L 0.20 deleterious(0) probably_damaging(0.989) TCGA-58-8387-01 13 36049021 36049021 T C MAB21L1 3'UTR 0.20 TCGA-58-8387-01 13 36428696 36428696 C G DCLK1 Silent p.P325P 0.11 TCGA-58-8387-01 14 101491941 101491941 C T MIR1197 RNA 0.23 TCGA-58-8387-01 14 21992981 21992981 C T SALL2 Missense_Mutation p.R294Q 0.38 tolerated(0.23) probably_damaging(0.99) TCGA-58-8387-01 14 22690092 22690092 C T TRAV35 Silent p.V17V 0.11 TCGA-58-8387-01 14 22962958 22962958 C T TRAJ45 Missense_Mutation p.H17Y 0.21 unknown(0) TCGA-58-8387-01 14 24687629 24687629 G C NEDD8-MDP1 Silent p.T9T 0.29 TCGA-58-8387-01 14 25042946 25042946 C G CTSG Missense_Mutation p.G222A 0.26 deleterious(0.04) possibly_damaging(0.788) TCGA-58-8387-01 14 31611110 31611110 T C HECTD1 Missense_Mutation p.I943V 0.14 tolerated(0.45) benign(0.026) TCGA-58-8387-01 14 38724304 38724304 G T CLEC14A Silent p.A308A 0.29 TCGA-58-8387-01 14 44975633 44975633 C G FSCB Silent p.S186S 0.18 TCGA-58-8387-01 14 89305901 89305901 A G TTC8 Missense_Mutation p.I84V 0.21 tolerated(0.28) possibly_damaging(0.811) TCGA-58-8387-01 15 20876474 20876474 T C NBEAP1 RNA 0.06 TCGA-58-8387-01 15 24921968 24921968 C A NPAP1 Silent p.P318P 0.18 TCGA-58-8387-01 15 28482261 28482261 T A HERC2 Splice_Site p.X1285_splice 0.13 TCGA-58-8387-01 15 41796559 41796559 C T LTK Missense_Mutation p.R776H 0.16 tolerated_low_confidence(0.64) benign(0.003) TCGA-58-8387-01 15 42710048 42710048 C T ZNF106 Nonsense_Mutation p.W1850* 0.17 TCGA-58-8387-01 15 48426719 48426719 G T SLC24A5 Missense_Mutation p.G158V 0.18 deleterious(0) probably_damaging(0.978) TCGA-58-8387-01 15 48518752 48518752 C A SLC12A1 Intron 0.24 TCGA-58-8387-01 15 55838219 55838219 G C PYGO1 3'UTR 0.19 TCGA-58-8387-01 15 56208732 56208732 G A NEDD4 Missense_Mutation p.L100F 0.20 tolerated_low_confidence(0.12) possibly_damaging(0.804) TCGA-58-8387-01 15 57730477 57730477 C A CGNL1 Missense_Mutation p.P94T 0.14 tolerated(0.58) benign(0.01) TCGA-58-8387-01 16 14397848 14397848 G A MIR193B RNA 0.05 TCGA-58-8387-01 16 15129381 15129381 C T PDXDC1 Missense_Mutation p.S693L 0.18 tolerated(0.09) benign(0.001) TCGA-58-8387-01 16 20489907 20489907 G A ACSM2A Missense_Mutation p.D397N 0.23 deleterious(0.04) benign(0.004) TCGA-58-8387-01 16 21973818 21973818 G C UQCRC2 Missense_Mutation p.E124Q 0.14 tolerated(0.23) benign(0.2) TCGA-58-8387-01 16 70363761 70363761 G A DDX19B Silent p.L271L 0.19 TCGA-58-8387-01 16 72166663 72166663 C T PMFBP1 Silent p.Q477Q 0.31 TCGA-58-8387-01 16 773110 773110 G A CCDC78 Silent p.F395F 0.16 TCGA-58-8387-01 17 19189094 19189094 G T EPN2 Missense_Mutation p.A253S 0.30 tolerated(0.36) benign(0.056) TCGA-58-8387-01 17 263360 263360 C T C17orf97 Silent p.L242L 0.17 TCGA-58-8387-01 17 35295566 35295566 G T LHX1 Missense_Mutation p.W24C 0.18 deleterious(0) probably_damaging(1) TCGA-58-8387-01 17 40342317 40342317 C T GHDC Intron 0.11 TCGA-58-8387-01 17 41352625 41352625 G A NBR1 Missense_Mutation p.R823K 0.18 tolerated(0.11) benign(0.217) TCGA-58-8387-01 17 47389291 47389291 C A ZNF652 Nonsense_Mutation p.E388* 0.16 TCGA-58-8387-01 17 48166608 48166608 G T ITGA3 Missense_Mutation p.Q1060H 0.20 deleterious_low_confidence(0.02) probably_damaging(0.965) TCGA-58-8387-01 17 48246665 48246665 C G SGCA Intron 0.52 TCGA-58-8387-01 17 48265306 48265306 G A COL1A1 Silent p.G1100G 0.15 TCGA-58-8387-01 17 48753797 48753797 A G ABCC3 Missense_Mutation p.I1076V 0.28 tolerated(0.46) benign(0.075) TCGA-58-8387-01 17 62856815 62856815 C T LRRC37A3 Missense_Mutation p.S1150N 0.12 tolerated(0.05) possibly_damaging(0.566) TCGA-58-8387-01 17 7578284 7578284 C - TP53 Frame_Shift_Del p.A189Pfs*58 0.25 TCGA-58-8387-01 17 78058600 78058600 A G CCDC40 Missense_Mutation p.H683R 0.11 tolerated(0.13) benign(0.001) TCGA-58-8387-01 18 20596835 20596835 A G RBBP8 Missense_Mutation p.K801R 0.28 tolerated(0.08) benign(0.076) TCGA-58-8387-01 18 45556162 45556162 C T ZBTB7C Silent p.T443T 0.16 TCGA-58-8387-01 18 47799728 47799728 T A MBD1 Silent p.V520V 0.23 TCGA-58-8387-01 18 64211294 64211294 T C CDH19 Silent p.V376V 0.25 TCGA-58-8387-01 18 7037672 7037672 C T LAMA1 Missense_Mutation p.G548R 0.14 tolerated(0.06) benign(0.066) TCGA-58-8387-01 19 10794633 10794633 G A ILF3 Silent p.A686A 0.19 TCGA-58-8387-01 19 12060182 12060182 G T ZNF700 Missense_Mutation p.C448F 0.13 deleterious(0) probably_damaging(1) TCGA-58-8387-01 19 12243306 12243306 G T ZNF20 3'UTR 0.19 TCGA-58-8387-01 19 12863544 12863544 G C BEST2 Silent p.L46L 0.14 TCGA-58-8387-01 19 15839384 15839384 T G OR10H2 Missense_Mutation p.F177L 0.19 deleterious(0) benign(0.232) TCGA-58-8387-01 19 16764895 16764895 G A SMIM7 Nonsense_Mutation p.R55* 0.15 TCGA-58-8387-01 19 20044660 20044660 C T ZNF93 Missense_Mutation p.T299I 0.15 tolerated(0.44) benign(0.041) TCGA-58-8387-01 19 34263725 34263725 C T CHST8 Silent p.F344F 0.18 TCGA-58-8387-01 19 44223588 44223588 T A IRGC Nonsense_Mutation p.L293* 0.21 TCGA-58-8387-01 19 45885791 45885791 G C PPP1R13L Nonsense_Mutation p.Y814* 0.14 TCGA-58-8387-01 19 47422356 47422356 G A ARHGAP35 Missense_Mutation p.E142K 0.22 deleterious(0) probably_damaging(0.99) TCGA-58-8387-01 19 51890512 51890513 GG A LIM2 Frame_Shift_Del p.P62Lfs*49 0.21 TCGA-58-8387-01 19 51920861 51920861 C A SIGLEC10 5'UTR 0.18 TCGA-58-8387-01 19 52817450 52817450 G T ZNF480 Silent p.A39A 0.20 TCGA-58-8387-01 19 53740489 53740489 A G ZNF677 Silent p.T497T 0.17 TCGA-58-8387-01 19 54445569 54445569 C A CACNG7 3'UTR 0.14 TCGA-58-8387-01 19 55098761 55098761 T A LILRA2 Missense_Mutation p.L467Q 0.20 deleterious(0) possibly_damaging(0.768) TCGA-58-8387-01 19 55221340 55221340 C G AC098784.2 3'Flank 0.11 TCGA-58-8387-01 19 58477950 58477950 C T C19orf18 Missense_Mutation p.V107I 0.14 tolerated(1) benign(0) TCGA-58-8387-01 19 6591004 6591004 C G CD70 Missense_Mutation p.E4Q 0.34 deleterious(0.02) benign(0.032) TCGA-58-8387-01 19 9076347 9076347 G C MUC16 Missense_Mutation p.T3700R 0.15 unknown(0) TCGA-58-8387-01 1 103352370 103352370 G A COL11A1 Silent p.F1617F 0.17 TCGA-58-8387-01 1 10720352 10720352 G A CASZ1 Silent p.G249G 0.15 TCGA-58-8387-01 1 149754285 149754285 C A FCGR1A 5'UTR 0.19 TCGA-58-8387-01 1 152944456 152944456 C G SPRR4 Silent p.P30P 0.11 TCGA-58-8387-01 1 156849035 156849035 G T NTRK1 Missense_Mutation p.G643C 0.11 deleterious(0) possibly_damaging(0.705) TCGA-58-8387-01 1 156917741 156917741 C G ARHGEF11 Missense_Mutation p.E721Q 0.14 deleterious(0.05) probably_damaging(0.991) TCGA-58-8387-01 1 157497417 157497417 G T FCRL5 Silent p.L650L 0.13 TCGA-58-8387-01 1 158323802 158323802 C G CD1E Missense_Mutation p.F8L 0.17 tolerated(0.23) benign(0.043) TCGA-58-8387-01 1 158576402 158576402 C A OR10Z1 Silent p.P58P 0.18 TCGA-58-8387-01 1 158590194 158590194 C G SPTA1 Missense_Mutation p.K2061N 0.20 tolerated(1) benign(0.001) TCGA-58-8387-01 1 16524995 16524995 C T ARHGEF19 3'UTR 0.32 TCGA-58-8387-01 1 167962557 167962557 A G DCAF6 Missense_Mutation p.Y261C 0.21 deleterious(0) probably_damaging(0.995) TCGA-58-8387-01 1 16913610 16913610 G C NBPF1 Nonsense_Mutation p.S238* 0.07 TCGA-58-8387-01 1 17083659 17083659 A G MST1L RNA 0.08 TCGA-58-8387-01 1 200827238 200827238 C G CAMSAP2 3'UTR 0.26 TCGA-58-8387-01 1 20501667 20501667 G T PLA2G2C Intron 0.15 TCGA-58-8387-01 1 21929308 21929308 C A RAP1GAP Silent p.V573V 0.15 TCGA-58-8387-01 1 236766673 236766673 C T HEATR1 Missense_Mutation p.C49Y 0.16 deleterious(0) probably_damaging(0.976) TCGA-58-8387-01 1 236767331 236767331 G C HEATR1 Missense_Mutation p.S22C 0.29 deleterious(0.02) benign(0.021) TCGA-58-8387-01 1 245851524 245851524 G A KIF26B Missense_Mutation p.G1747S 0.30 tolerated(1) unknown(0) TCGA-58-8387-01 1 248845334 248845334 G T OR14I1 Missense_Mutation p.S91Y 0.11 deleterious(0.01) possibly_damaging(0.904) TCGA-58-8387-01 1 28835372 28835372 G T SNORA73B 3'Flank 0.19 TCGA-58-8387-01 1 32834066 32834066 T C BSDC1 Silent p.K431K 0.23 TCGA-58-8387-01 1 43772572 43772572 C A TIE1 Silent p.L182L 0.15 TCGA-58-8387-01 1 52859290 52859290 A C ORC1 Missense_Mutation p.Y303D 0.16 tolerated(0.2) benign(0.021) TCGA-58-8387-01 1 52940909 52940909 C T ZCCHC11 Silent p.Q774Q 0.23 TCGA-58-8387-01 1 74665363 74665363 G A FPGT-TNNI3K Missense_Mutation p.R46H 0.13 deleterious_low_confidence(0.01) benign(0.001) TCGA-58-8387-01 1 75042620 75042620 C A C1orf173 Missense_Mutation p.G726V 0.10 tolerated(0.18) benign(0.011) TCGA-58-8387-01 1 9804061 9804061 T A CLSTN1 Missense_Mutation p.M413L 0.22 tolerated(0.19) benign(0.1) TCGA-58-8387-01 20 19998668 19998668 G C NAA20 Intron 0.13 TCGA-58-8387-01 20 3102340 3102340 G C UBOX5 Missense_Mutation p.H315Q 0.22 tolerated(0.22) benign(0.009) TCGA-58-8387-01 20 34828491 34828491 A G AAR2 Missense_Mutation p.Y234C 0.20 deleterious(0) probably_damaging(0.997) TCGA-58-8387-01 20 372085 372085 G C TRIB3 Missense_Mutation p.R149P 0.12 deleterious(0) probably_damaging(1) TCGA-58-8387-01 20 60963028 60963028 G A RPS21 Intron 0.12 TCGA-58-8387-01 20 61593988 61593988 C T SLC17A9 Silent p.T170T 0.21 TCGA-58-8387-01 20 61833895 61833895 G C YTHDF1 Missense_Mutation p.S466C 0.14 deleterious(0.04) probably_damaging(0.988) TCGA-58-8387-01 22 41565529 41565529 G A EP300 Missense_Mutation p.D1399N 0.26 probably_damaging(1) TCGA-58-8387-01 2 118688657 118688657 C G CCDC93 Missense_Mutation p.E600Q 0.20 deleterious(0.01) probably_damaging(0.973) TCGA-58-8387-01 2 120438477 120438477 G A TMEM177 Silent p.R16R 0.15 TCGA-58-8387-01 2 128184749 128184749 G A PROC Silent p.L249L 0.22 TCGA-58-8387-01 2 1437348 1437348 C A TPO Missense_Mutation p.N106K 0.22 tolerated(0.36) benign(0.002) TCGA-58-8387-01 2 179460341 179460341 C T TTN Missense_Mutation p.G19247D 0.25 TCGA-58-8387-01 2 179479251 179479251 G T TTN Silent p.I16330I 0.08 TCGA-58-8387-01 2 179594286 179594286 G T TTN Silent p.P6199P 0.13 TCGA-58-8387-01 2 179720196 179720197 - T CCDC141 Frame_Shift_Ins p.V980Sfs*2 0.19 TCGA-58-8387-01 2 196889205 196889205 G C DNAH7 Missense_Mutation p.R231G 0.18 tolerated(0.35) benign(0.115) TCGA-58-8387-01 2 209106784 209106784 C G IDH1 Missense_Mutation p.E262Q 0.18 deleterious_low_confidence(0.02) benign(0.095) TCGA-58-8387-01 2 220349150 220349150 G T SPEG Missense_Mutation p.S2322I 0.12 benign(0.249) TCGA-58-8387-01 2 220397055 220397055 C T ASIC4 Missense_Mutation p.P419S 0.14 deleterious(0) probably_damaging(0.982) TCGA-58-8387-01 2 227661990 227661990 C A IRS1 Missense_Mutation p.G489C 0.23 tolerated(0.08) benign(0.425) TCGA-58-8387-01 2 231947633 231947633 G A PSMD1 Missense_Mutation p.A484T 0.10 deleterious(0) possibly_damaging(0.677) TCGA-58-8387-01 2 242396233 242396233 C T FARP2 Nonsense_Mutation p.Q495* 0.17 TCGA-58-8387-01 2 61149083 61149083 A G REL Missense_Mutation p.T425A 0.80 tolerated(0.33) benign(0.01) TCGA-58-8387-01 2 84518125 84518125 T C FUNDC2P2 RNA 0.16 TCGA-58-8387-01 2 90121684 90121684 C A IGKV1D-17 Silent p.L9L 0.11 TCGA-58-8387-01 2 90249305 90249305 T A IGKV1D-43 Missense_Mutation p.S87R 0.15 deleterious(0.02) benign(0.246) TCGA-58-8387-01 3 100962408 100962408 C G IMPG2 Missense_Mutation p.E923Q 0.23 deleterious(0) probably_damaging(1) TCGA-58-8387-01 3 112538684 112538684 G C CD200R1L Silent p.L246L 0.13 TCGA-58-8387-01 3 112993410 112993410 C G BOC Missense_Mutation p.P475A 0.11 deleterious(0.01) probably_damaging(1) TCGA-58-8387-01 3 113563348 113563348 A C GRAMD1C Splice_Site p.X10_splice 0.15 TCGA-58-8387-01 3 113677637 113677637 G A ZDHHC23 Intron 0.29 TCGA-58-8387-01 3 129695694 129695694 G C TRH Missense_Mutation p.E122Q 0.15 tolerated(0.45) benign(0.047) TCGA-58-8387-01 3 137729155 137729155 T C CLDN18 Missense_Mutation p.W30R 0.18 deleterious(0) probably_damaging(1) TCGA-58-8387-01 3 142503726 142503726 C T TRPC1 Missense_Mutation p.H381Y 0.14 deleterious(0) possibly_damaging(0.718) TCGA-58-8387-01 3 150931860 150931860 G T P2RY14 Nonsense_Mutation p.S82* 0.11 TCGA-58-8387-01 3 157160342 157160342 C T PTX3 Silent p.L240L 0.16 TCGA-58-8387-01 3 157213241 157213241 C G VEPH1 5'UTR 0.15 TCGA-58-8387-01 3 180372569 180372569 C G CCDC39 Missense_Mutation p.R304T 0.12 deleterious(0.03) benign(0.138) TCGA-58-8387-01 3 182763274 182763274 T A MCCC1 Missense_Mutation p.N337I 0.27 deleterious(0) probably_damaging(1) TCGA-58-8387-01 3 197497068 197497068 G T FYTTD1 Missense_Mutation p.Q150H 0.11 deleterious(0.02) probably_damaging(0.926) TCGA-58-8387-01 3 48605599 48605599 G A COL7A1 Missense_Mutation p.S2600F 0.35 benign(0.355) TCGA-58-8387-01 4 141590143 141590143 C G TBC1D9 Missense_Mutation p.E506Q 0.12 tolerated(0.13) possibly_damaging(0.587) TCGA-58-8387-01 4 162306968 162306968 G C FSTL5 Silent p.L825L 0.23 TCGA-58-8387-01 4 187177241 187177241 G T KLKB1 Missense_Mutation p.G529C 0.12 deleterious(0) probably_damaging(1) TCGA-58-8387-01 4 47808961 47808961 C G CORIN Missense_Mutation p.C56S 0.20 tolerated_low_confidence(0.12) probably_damaging(0.997) TCGA-58-8387-01 4 62801695 62801695 C T LPHN3 Missense_Mutation p.P716L 0.21 deleterious(0) probably_damaging(1) TCGA-58-8387-01 4 71630261 71630261 G A RUFY3 Missense_Mutation p.M180I 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-58-8387-01 4 72897579 72897579 G C NPFFR2 5'UTR 0.17 TCGA-58-8387-01 4 74352786 74352786 A T AFM Missense_Mutation p.E195D 0.08 tolerated(0.18) benign(0.186) TCGA-58-8387-01 4 77660489 77660489 G A SHROOM3 Missense_Mutation p.R388Q 0.20 deleterious(0) probably_damaging(0.998) TCGA-58-8387-01 4 860309 860309 G A GAK Silent p.G962G 0.13 TCGA-58-8387-01 4 86189 86189 T A Z95704.2 RNA 0.33 TCGA-58-8387-01 4 88047280 88047280 A G AFF1 Missense_Mutation p.K868R 0.18 tolerated(0.14) unknown(0) TCGA-58-8387-01 4 90647762 90647762 G C SNCA 3'UTR 0.23 TCGA-58-8387-01 5 13820534 13820534 C T DNAH5 Silent p.V2254V 0.21 TCGA-58-8387-01 5 138860390 138860390 G A TMEM173 Missense_Mutation p.R169W 0.10 deleterious(0) probably_damaging(0.949) TCGA-58-8387-01 5 140552997 140552997 T C PCDHB7 Missense_Mutation p.L194S 0.20 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-58-8387-01 5 141331063 141331063 G A PCDH12 Silent p.G991G 0.29 TCGA-58-8387-01 5 16666858 16666858 G A MYO10 Silent p.I2040I 0.11 TCGA-58-8387-01 5 55422830 55422830 G A ANKRD55 Missense_Mutation p.A239V 0.08 tolerated(0.34) probably_damaging(0.998) TCGA-58-8387-01 5 66460125 66460125 G A MAST4 Silent p.L1706L 0.18 TCGA-58-8387-01 5 74882863 74882863 G T POLK Missense_Mutation p.R413S 0.10 deleterious(0.01) probably_damaging(0.974) TCGA-58-8387-01 5 7789812 7789812 G C ADCY2 Missense_Mutation p.E843Q 0.03 deleterious(0.03) probably_damaging(0.991) TCGA-58-8387-01 6 111887745 111887745 C T TRAF3IP2 Missense_Mutation p.V460I 0.10 tolerated(0.97) benign(0.05) TCGA-58-8387-01 6 12292585 12292585 G A EDN1 Missense_Mutation p.A26T 0.47 tolerated(0.25) benign(0.016) TCGA-58-8387-01 6 124979431 124979431 G C NKAIN2 Missense_Mutation p.D125H 0.44 tolerated(0.13) possibly_damaging(0.797) TCGA-58-8387-01 6 127911330 127911330 G A C6orf58 Missense_Mutation p.R258K 0.37 tolerated(0.35) benign(0.065) TCGA-58-8387-01 6 167789491 167789491 G C TCP10 Silent p.T217T 0.31 TCGA-58-8387-01 6 33374033 33374033 G T KIFC1 Nonsense_Mutation p.E533* 0.04 TCGA-58-8387-01 7 114271638 114271638 A C FOXP2 Missense_Mutation p.Q243P 0.39 tolerated(0.22) unknown(0) TCGA-58-8387-01 7 137255964 137255964 T C DGKI Missense_Mutation p.D635G 0.18 deleterious(0.02) benign(0.324) TCGA-58-8387-01 7 137255965 137255965 C A DGKI Missense_Mutation p.D635Y 0.18 deleterious(0) probably_damaging(0.997) TCGA-58-8387-01 7 154564556 154564556 C A DPP6 Missense_Mutation p.A347D 0.14 deleterious(0) probably_damaging(0.994) TCGA-58-8387-01 7 156555828 156555828 G C LMBR1 Nonsense_Mutation p.S198* 0.19 TCGA-58-8387-01 7 16913437 16913437 G C AGR3 Missense_Mutation p.T47S 0.15 tolerated(0.16) probably_damaging(1) TCGA-58-8387-01 7 17861183 17861183 G A SNX13 Silent p.T598T 0.21 TCGA-58-8387-01 7 4247730 4247730 G A SDK1 Splice_Site p.X1739_splice 0.20 TCGA-58-8387-01 7 88964921 88964921 G - ZNF804B Frame_Shift_Del p.G876Afs*14 0.16 TCGA-58-8387-01 7 93065474 93065474 G C CALCR Missense_Mutation p.F347L 0.16 tolerated(1) probably_damaging(0.997) TCGA-58-8387-01 8 118159383 118159383 G C SLC30A8 Missense_Mutation p.E88Q 0.14 deleterious(0) probably_damaging(1) TCGA-58-8387-01 8 134251234 134251234 C T NDRG1 Missense_Mutation p.E358K 0.29 deleterious(0.03) possibly_damaging(0.54) TCGA-58-8387-01 8 142222364 142222364 C T SLC45A4 Missense_Mutation p.E694K 0.23 deleterious_low_confidence(0.01) benign(0.008) TCGA-58-8387-01 8 145947422 145947422 C T ZNF251 Silent p.E541E 0.15 TCGA-58-8387-01 8 146067455 146067455 C T ZNF7 Silent p.L321L 0.14 TCGA-58-8387-01 9 100093049 100093049 G T CCDC180 Missense_Mutation p.E802D 0.18 deleterious(0.03) benign(0.388) TCGA-58-8387-01 9 111746660 111746660 T C CTNNAL1 Silent p.E232E 0.19 TCGA-58-8387-01 9 135202801 135202801 T G SETX Missense_Mutation p.D1395A 0.25 tolerated(0.34) benign(0.041) TCGA-58-8387-01 9 140712522 140712522 G T EHMT1 Nonsense_Mutation p.E1158* 0.21 TCGA-58-8387-01 9 35650231 35650231 G A SIT1 Nonsense_Mutation p.Q103* 0.18 TCGA-58-8387-01 9 37740463 37740463 G A FRMPD1 Silent p.E646E 0.09 TCGA-58-8387-01 9 73458034 73458034 C T TRPM3 Missense_Mutation p.R229H 0.11 deleterious(0.02) possibly_damaging(0.839) TCGA-58-8387-01 9 99381577 99381577 C G CDC14B Silent p.V28V 0.20 TCGA-58-8387-01 9 99522661 99522661 C T ZNF510 Missense_Mutation p.E151K 0.19 tolerated(0.12) benign(0.01) TCGA-58-8387-01 X 105152871 105152871 C T NRK Missense_Mutation p.A414V 0.38 deleterious(0.01) possibly_damaging(0.894) TCGA-58-8387-01 X 299427 299427 G A PPP2R3B Missense_Mutation p.P497S 0.10 tolerated(0.06) benign(0.213) TCGA-58-8387-01 X 3248744 3248744 G A MXRA5 Missense_Mutation p.H87Y 0.41 deleterious(0) probably_damaging(1) TCGA-58-8387-01 X 37028824 37028824 C T FAM47C Missense_Mutation p.P781S 0.40 tolerated(0.56) benign(0.002) TCGA-58-8388-01 10 112838370 112838370 A T ADRA2A Missense_Mutation p.N206Y 0.67 deleterious(0) probably_damaging(0.997) TCGA-58-8388-01 10 118314718 118314718 G T PNLIP Missense_Mutation p.Q200H 0.51 tolerated(0.23) benign(0.438) TCGA-58-8388-01 10 118314719 118314719 G T PNLIP Missense_Mutation p.G201C 0.51 deleterious(0) probably_damaging(0.991) TCGA-58-8388-01 10 21309055 21309055 C G NEBL Missense_Mutation p.L46F 0.30 tolerated(0.53) probably_damaging(0.97) TCGA-58-8388-01 10 76737195 76737195 G C KAT6B Missense_Mutation p.E705D 0.45 possibly_damaging(0.727) TCGA-58-8388-01 10 7683955 7683955 A G ITIH5 Silent p.S78S 0.41 TCGA-58-8388-01 11 104897028 104897028 C G CASP1 Missense_Mutation p.R391T 0.49 deleterious(0) probably_damaging(0.996) TCGA-58-8388-01 11 110456984 110456984 T G ARHGAP20 Silent p.V457V 0.36 TCGA-58-8388-01 11 118656814 118656814 G C DDX6 Missense_Mutation p.N49K 0.10 tolerated_low_confidence(0.71) benign(0.016) TCGA-58-8388-01 11 121177801 121177801 T A SC5D Silent p.P160P 0.35 TCGA-58-8388-01 11 123893821 123893821 G T OR10G9 Silent p.V34V 0.26 TCGA-58-8388-01 11 133714456 133714456 G T SPATA19 Missense_Mutation p.S72Y 0.33 deleterious(0.02) possibly_damaging(0.781) TCGA-58-8388-01 11 1954991 1954991 T C TNNT3 Missense_Mutation p.L71P 0.04 deleterious(0) probably_damaging(1) TCGA-58-8388-01 11 19913996 19913996 G A NAV2 Missense_Mutation p.A286T 0.35 tolerated_low_confidence(0.88) benign(0.001) TCGA-58-8388-01 11 33163333 33163333 C T CSTF3 Intron 0.43 TCGA-58-8388-01 11 375662 375662 C T B4GALNT4 Missense_Mutation p.H292Y 0.31 tolerated(0.1) benign(0.119) TCGA-58-8388-01 11 45672370 45672370 G T CHST1 Missense_Mutation p.P35H 0.30 tolerated(0.35) possibly_damaging(0.569) TCGA-58-8388-01 11 47188084 47188084 C A ARFGAP2 Missense_Mutation p.G467W 0.25 deleterious(0) probably_damaging(1) TCGA-58-8388-01 11 57971600 57971600 G T OR1S2 Missense_Mutation p.N18K 0.35 deleterious(0) probably_damaging(0.998) TCGA-58-8388-01 11 57995754 57995754 G A OR10Q1 Silent p.R198R 0.26 TCGA-58-8388-01 11 64876905 64876905 G T VPS51 Missense_Mutation p.D533Y 0.22 deleterious(0) probably_damaging(0.969) TCGA-58-8388-01 11 66043702 66043702 G C RAB1B Missense_Mutation p.C200S 0.38 deleterious_low_confidence(0) benign(0.082) TCGA-58-8388-01 11 67261799 67261799 C G PITPNM1 Silent p.T925T 0.38 TCGA-58-8388-01 11 68671269 68671269 A G MRPL21 Missense_Mutation p.S4P 0.07 tolerated_low_confidence(0.12) benign(0.044) TCGA-58-8388-01 11 88027128 88027128 C T CTSC 3'UTR 0.32 TCGA-58-8388-01 11 89531662 89531662 C G TRIM49 Missense_Mutation p.G332A 0.20 deleterious(0.05) possibly_damaging(0.716) TCGA-58-8388-01 11 89531663 89531663 C A TRIM49 Missense_Mutation p.G332C 0.20 deleterious(0) probably_damaging(0.998) TCGA-58-8388-01 12 104383116 104383116 A G GLT8D2 3'UTR 0.21 TCGA-58-8388-01 12 112642366 112642366 T A HECTD4 Silent p.P2585P 0.31 TCGA-58-8388-01 12 119588935 119588935 G T SRRM4 Missense_Mutation p.S397I 0.33 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-58-8388-01 12 122285044 122285044 G A HPD Nonsense_Mutation p.R225* 0.33 TCGA-58-8388-01 12 21201805 21201805 G A SLCO1B7 Missense_Mutation p.S385N 0.32 tolerated(1) benign(0.001) TCGA-58-8388-01 12 53880256 53880256 C T MAP3K12 Missense_Mutation p.R199Q 0.30 deleterious(0.02) possibly_damaging(0.842) TCGA-58-8388-01 12 57881758 57881758 G T MARS 5'UTR 0.45 TCGA-58-8388-01 12 6755731 6755731 G T ACRBP Missense_Mutation p.S92Y 0.33 deleterious(0) probably_damaging(0.983) TCGA-58-8388-01 12 97052094 97052094 T C C12orf55 Silent p.C1810C 0.32 TCGA-58-8388-01 12 99071242 99071242 C T APAF1 Silent p.V611V 0.32 TCGA-58-8388-01 13 39454731 39454731 G T FREM2 Missense_Mutation p.S3106I 0.61 tolerated_low_confidence(0.14) benign(0.001) TCGA-58-8388-01 13 39454807 39454807 A T FREM2 Silent p.A3131A 0.64 TCGA-58-8388-01 13 49033940 49033940 G T RB1 Nonsense_Mutation p.E693* 0.42 TCGA-58-8388-01 13 61985588 61985588 C A PCDH20 Nonsense_Mutation p.E882* 0.55 TCGA-58-8388-01 13 73636662 73636662 C T KLF5 Missense_Mutation p.P309S 0.35 deleterious(0) probably_damaging(0.968) TCGA-58-8388-01 13 95114331 95114331 G A DCT Nonsense_Mutation p.R326* 0.47 TCGA-58-8388-01 14 100801334 100801334 T C WARS Missense_Mutation p.K432E 0.44 tolerated(0.07) possibly_damaging(0.76) TCGA-58-8388-01 14 20665990 20665990 C A OR11G2 Silent p.R166R 0.57 TCGA-58-8388-01 14 21463037 21463037 T C METTL17 Missense_Mutation p.W285R 0.56 deleterious(0) probably_damaging(1) TCGA-58-8388-01 14 81609307 81609307 A G TSHR Missense_Mutation p.N302S 0.52 tolerated(0.05) probably_damaging(0.91) TCGA-58-8388-01 14 88478224 88478224 G T GPR65 3'UTR 0.38 TCGA-58-8388-01 14 88478225 88478225 G T GPR65 3'UTR 0.38 TCGA-58-8388-01 14 91875088 91875088 C T CCDC88C Missense_Mutation p.R62H 0.44 deleterious(0.01) probably_damaging(0.99) TCGA-58-8388-01 14 94110004 94110004 C T UNC79 Missense_Mutation p.A1864V 0.57 deleterious(0) probably_damaging(0.997) TCGA-58-8388-01 15 25453125 25453125 A T SNORD115-22 5'Flank 0.29 TCGA-58-8388-01 15 34649258 34649258 T A NUTM1 Missense_Mutation p.S989T 0.34 deleterious(0.02) possibly_damaging(0.606) TCGA-58-8388-01 15 35703086 35703101 CAGGATCTAAACCTGC - DPH6 Splice_Site p.X169_splice 0.15 TCGA-58-8388-01 15 41809621 41809621 C G RPAP1 3'UTR 0.28 TCGA-58-8388-01 15 43622759 43622759 G T LCMT2 5'UTR 0.39 TCGA-58-8388-01 15 43827123 43827123 G A PPIP5K1 Missense_Mutation p.H1351Y 0.34 deleterious_low_confidence(0.05) benign(0.001) TCGA-58-8388-01 15 50822080 50822080 G C USP50 Missense_Mutation p.H284D 0.21 tolerated(0.28) benign(0.158) TCGA-58-8388-01 15 50866480 50866480 C T TRPM7 Missense_Mutation p.D1767N 0.20 deleterious(0) probably_damaging(0.975) TCGA-58-8388-01 15 52404574 52404574 C A BCL2L10 Missense_Mutation p.R117L 0.25 tolerated(0.2) benign(0.002) TCGA-58-8388-01 15 54307593 54307593 G A UNC13C Silent p.G831G 0.24 TCGA-58-8388-01 15 64710843 64710843 A T TRIP4 Missense_Mutation p.Q425L 0.31 deleterious(0.01) benign(0.027) TCGA-58-8388-01 15 65140840 65140840 A G AC069368.3 Missense_Mutation p.K21E 0.21 deleterious(0) probably_damaging(0.999) TCGA-58-8388-01 16 11773252 11773252 C G TXNDC11 Silent p.T892T 0.65 TCGA-58-8388-01 16 20781427 20781427 C T ACSM3 Missense_Mutation p.S24F 0.15 tolerated(0.11) benign(0.01) TCGA-58-8388-01 16 23713589 23713589 G C ERN2 Missense_Mutation p.H411D 0.20 deleterious(0) probably_damaging(0.999) TCGA-58-8388-01 16 70891612 70891612 G A HYDIN Silent p.L4097L 0.11 TCGA-58-8388-01 16 825029 825029 G T MSLNL Missense_Mutation p.Q515K 0.59 possibly_damaging(0.486) TCGA-58-8388-01 16 90124254 90124254 C T PRDM7 3'UTR 0.44 TCGA-58-8388-01 17 11672630 11672630 G T DNAH9 Silent p.T2512T 0.37 TCGA-58-8388-01 17 16593923 16593923 A G CCDC144A Missense_Mutation p.D70G 0.60 deleterious_low_confidence(0.01) possibly_damaging(0.539) TCGA-58-8388-01 17 18661801 18661801 C A FBXW10 Missense_Mutation p.S472R 0.47 deleterious(0) probably_damaging(0.984) TCGA-58-8388-01 17 33520873 33520873 G A SLC35G3 Nonsense_Mutation p.Q152* 0.39 TCGA-58-8388-01 17 33935180 33935180 C G AP2B1 Missense_Mutation p.P100R 0.10 deleterious(0) probably_damaging(0.986) TCGA-58-8388-01 17 44111650 44111650 T A KANSL1 Missense_Mutation p.Q848L 0.34 tolerated(0.24) benign(0.001) TCGA-58-8388-01 17 47302086 47302086 A G PHOSPHO1 Missense_Mutation p.V134A 0.33 deleterious(0) benign(0.217) TCGA-58-8388-01 17 49083533 49083533 T C SPAG9 Missense_Mutation p.D446G 0.36 deleterious(0) benign(0.063) TCGA-58-8388-01 17 53797867 53797867 C A TMEM100 3'UTR 0.47 TCGA-58-8388-01 17 56620543 56620543 G A C17orf47 Silent p.V335V 0.32 TCGA-58-8388-01 17 6012935 6012935 C T WSCD1 Silent p.P286P 0.55 TCGA-58-8388-01 17 60493508 60493508 A G EFCAB3 Missense_Mutation p.T431A 0.43 deleterious(0) possibly_damaging(0.904) TCGA-58-8388-01 17 61958185 61958185 T A GH2 Missense_Mutation p.N135Y 0.36 tolerated(0.21) probably_damaging(0.965) TCGA-58-8388-01 17 62080283 62080283 G C ICAM2 Missense_Mutation p.P218A 0.17 tolerated(0.1) probably_damaging(0.922) TCGA-58-8388-01 17 62080284 62080284 C T ICAM2 Silent p.E217E 0.17 TCGA-58-8388-01 17 7578524 7578524 G A TP53 Nonsense_Mutation p.Q136* 0.55 TCGA-58-8388-01 17 79095837 79095837 G A AATK Silent p.A633A 0.06 TCGA-58-8388-01 18 28986216 28986216 A T DSG4 Missense_Mutation p.T605S 0.33 tolerated(0.51) benign(0.006) TCGA-58-8388-01 18 44559917 44559917 G T TCEB3B Missense_Mutation p.D573E 0.49 tolerated(0.31) benign(0.24) TCGA-58-8388-01 18 77624177 77624177 G A KCNG2 Silent p.P170P 0.37 TCGA-58-8388-01 18 8244113 8244113 G A PTPRM Silent p.V786V 0.31 TCGA-58-8388-01 19 15308363 15308363 A G NOTCH3 Missense_Mutation p.C49R 0.54 deleterious(0) probably_damaging(1) TCGA-58-8388-01 19 36333391 36333391 C G NPHS1 Missense_Mutation p.G799A 0.33 deleterious(0.02) possibly_damaging(0.839) TCGA-58-8388-01 19 39990036 39990036 G T DLL3 Nonsense_Mutation p.E92* 0.24 TCGA-58-8388-01 19 40221987 40221987 G C CLC 3'UTR 0.31 TCGA-58-8388-01 19 4280285 4280285 G A SHD Silent p.K75K 0.56 TCGA-58-8388-01 19 44891625 44891625 T G ZNF285 Missense_Mutation p.K261T 0.45 tolerated(0.24) benign(0.003) TCGA-58-8388-01 19 52031491 52031491 C A SIGLEC6 Missense_Mutation p.R343S 0.31 tolerated(0.91) benign(0.001) TCGA-58-8388-01 19 52031492 52031492 C A SIGLEC6 Missense_Mutation p.R343M 0.31 tolerated(0.3) benign(0.19) TCGA-58-8388-01 19 54759439 54759439 G C LILRB5 Missense_Mutation p.S221C 0.36 deleterious(0) probably_damaging(0.993) TCGA-58-8388-01 19 58117392 58117392 C G ZNF530 Missense_Mutation p.P167A 0.30 deleterious(0.02) probably_damaging(0.911) TCGA-58-8388-01 19 58805612 58805612 G C ZNF8 Missense_Mutation p.Q146H 0.26 tolerated(0.09) benign(0.011) TCGA-58-8388-01 1 103427465 103427465 C A COL11A1 Missense_Mutation p.G1042V 0.30 unknown(0) TCGA-58-8388-01 1 103427466 103427466 C A COL11A1 Nonsense_Mutation p.G1042* 0.29 TCGA-58-8388-01 1 107937907 107937907 C G NTNG1 Missense_Mutation p.P340R 0.39 deleterious(0.04) possibly_damaging(0.654) TCGA-58-8388-01 1 117699353 117699353 C G VTCN1 Missense_Mutation p.M96I 0.42 tolerated(0.19) benign(0.021) TCGA-58-8388-01 1 120307031 120307031 G T HMGCS2 Missense_Mutation p.T108K 0.34 deleterious(0) probably_damaging(1) TCGA-58-8388-01 1 151396506 151396506 A G POGZ Missense_Mutation p.V481A 0.30 tolerated(0.85) benign(0.002) TCGA-58-8388-01 1 154461673 154461673 G A SHE Missense_Mutation p.P293L 0.24 deleterious(0) possibly_damaging(0.842) TCGA-58-8388-01 1 155169897 155169898 GG - THBS3 Frame_Shift_Del p.P572Qfs*8 0.23 TCGA-58-8388-01 1 158583615 158583615 C G SPTA1 Missense_Mutation p.E2295D 0.19 tolerated(0.23) benign(0.004) TCGA-58-8388-01 1 158670397 158670397 C A OR6K2 Missense_Mutation p.A16S 0.19 deleterious(0.01) benign(0.081) TCGA-58-8388-01 1 176738806 176738806 G T PAPPA2 Missense_Mutation p.D1463Y 0.42 deleterious(0) probably_damaging(1) TCGA-58-8388-01 1 197026205 197026205 A G F13B Missense_Mutation p.L370P 0.06 deleterious(0) probably_damaging(0.981) TCGA-58-8388-01 1 201752701 201752701 C - NAV1 Frame_Shift_Del p.S844Vfs*19 0.23 TCGA-58-8388-01 1 226016481 226016481 G T EPHX1 Missense_Mutation p.W17C 0.26 tolerated(0.06) possibly_damaging(0.765) TCGA-58-8388-01 1 226180211 226180211 C T SDE2 Silent p.R136R 0.22 TCGA-58-8388-01 1 247599320 247599320 A T NLRP3 Silent p.S849S 0.39 TCGA-58-8388-01 1 248367067 248367067 G T OR2M3 Missense_Mutation p.G233V 0.48 deleterious(0.02) benign(0.367) TCGA-58-8388-01 1 248487502 248487502 G C OR2M7 Nonsense_Mutation p.Y123* 0.24 TCGA-58-8388-01 1 27189674 27189674 C T SFN 5'UTR 0.35 TCGA-58-8388-01 1 38227514 38227514 C G EPHA10 Missense_Mutation p.G138A 0.37 tolerated(0.42) probably_damaging(0.999) TCGA-58-8388-01 1 44435867 44435867 G A DPH2 Missense_Mutation p.S7N 0.31 deleterious(0.01) benign(0.011) TCGA-58-8388-01 1 4772616 4772616 T C AJAP1 Missense_Mutation p.M229T 0.33 tolerated(1) benign(0.048) TCGA-58-8388-01 1 66088664 66088664 G A LEPR Silent p.K891K 0.29 TCGA-58-8388-01 20 2413386 2413386 T A TGM6 3'UTR 0.35 TCGA-58-8388-01 20 37555046 37555046 G T FAM83D Silent p.T17T 0.32 TCGA-58-8388-01 20 43726557 43726557 C A KCNS1 Nonsense_Mutation p.E286* 0.60 TCGA-58-8388-01 20 44519073 44519073 G A NEURL2 Silent p.R186R 0.35 TCGA-58-8388-01 20 44640884 44640884 G T MMP9 Missense_Mutation p.G369V 0.33 deleterious(0.01) possibly_damaging(0.898) TCGA-58-8388-01 20 62367315 62367315 G A ZGPAT 3'UTR 0.32 TCGA-58-8388-01 20 62679648 62679648 C T SOX18 Silent p.G342G 0.25 TCGA-58-8388-01 22 19028774 19028774 C G DGCR2 Missense_Mutation p.G398A 0.22 tolerated(0.08) probably_damaging(0.975) TCGA-58-8388-01 22 22319690 22319690 C A TOP3B Missense_Mutation p.V304L 0.25 deleterious(0) probably_damaging(0.998) TCGA-58-8388-01 22 43715941 43715941 A G SCUBE1 Splice_Site p.X117_splice 0.31 TCGA-58-8388-01 2 102965643 102965643 G A IL1RL1 Missense_Mutation p.V408I 0.34 tolerated(0.39) probably_damaging(0.998) TCGA-58-8388-01 2 105858475 105858475 G A GPR45 Missense_Mutation p.V54M 0.33 deleterious(0) benign(0.133) TCGA-58-8388-01 2 109381632 109381632 A T RANBP2 Missense_Mutation p.Q1546L 0.37 deleterious(0.04) possibly_damaging(0.818) TCGA-58-8388-01 2 109398653 109398653 G C RANBP2 Missense_Mutation p.D2944H 0.34 deleterious(0) probably_damaging(1) TCGA-58-8388-01 2 136581549 136581549 A C LCT Missense_Mutation p.F277V 0.21 tolerated(0.06) benign(0.04) TCGA-58-8388-01 2 138771718 138771718 A G HNMT 3'UTR 0.38 TCGA-58-8388-01 2 141986825 141986825 G T LRP1B Silent p.L259L 0.38 TCGA-58-8388-01 2 171902688 171902688 G A TLK1 Nonsense_Mutation p.Q389* 0.35 TCGA-58-8388-01 2 179647324 179647324 C T TTN Missense_Mutation p.E1036K 0.31 TCGA-58-8388-01 2 18113357 18113357 G A KCNS3 Nonsense_Mutation p.W361* 0.37 TCGA-58-8388-01 2 196682539 196682539 G A DNAH7 Silent p.N3102N 0.43 TCGA-58-8388-01 2 231948443 231948443 C G PSMD1 Missense_Mutation p.A563G 0.37 deleterious(0) possibly_damaging(0.606) TCGA-58-8388-01 2 44528273 44528273 C G SLC3A1 Intron 0.20 TCGA-58-8388-01 2 50780084 50780084 C A NRXN1 Missense_Mutation p.G507V 0.33 deleterious(0) probably_damaging(0.993) TCGA-58-8388-01 2 63175902 63175902 G T EHBP1 Missense_Mutation p.D676Y 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.713) TCGA-58-8388-01 2 67630775 67630775 G A ETAA1 Missense_Mutation p.E321K 0.42 tolerated(0.09) benign(0.199) TCGA-58-8388-01 2 71762422 71762422 A T DYSF Missense_Mutation p.R492W 0.34 deleterious(0) possibly_damaging(0.797) TCGA-58-8388-01 2 79312705 79312705 C A REG1B Missense_Mutation p.G116W 0.25 deleterious(0.02) probably_damaging(0.993) TCGA-58-8388-01 2 89339934 89339934 C A IGKV1-12 Silent p.R46R 0.31 TCGA-58-8388-01 2 99812074 99812074 A T MRPL30 Missense_Mutation p.E131V 0.03 deleterious(0) possibly_damaging(0.883) TCGA-58-8388-01 3 108284215 108284215 T C KIAA1524 Missense_Mutation p.Y501C 0.21 deleterious(0) possibly_damaging(0.729) TCGA-58-8388-01 3 126734060 126734060 G - PLXNA1 Frame_Shift_Del p.P972Lfs*15 0.22 TCGA-58-8388-01 3 142681977 142681977 A G PAQR9 Missense_Mutation p.C68R 0.10 tolerated(0.3) benign(0.004) TCGA-58-8388-01 3 148890036 148890036 G T HPS3 3'UTR 0.23 TCGA-58-8388-01 3 173322306 173322306 C A NLGN1 5'UTR 0.29 TCGA-58-8388-01 3 195501147 195501147 C A MUC4 Missense_Mutation p.A4325S 0.19 benign(0.053) TCGA-58-8388-01 3 196304397 196304397 C G FBXO45 Missense_Mutation p.T131S 0.48 deleterious(0.02) probably_damaging(0.981) TCGA-58-8388-01 3 35833903 35833903 G A ARPP21 Missense_Mutation p.G689R 0.44 deleterious(0.01) benign(0.444) TCGA-58-8388-01 3 53845441 53845441 C G CACNA1D 3'UTR 0.64 TCGA-58-8388-01 3 56600699 56600699 G T CCDC66 Nonsense_Mutation p.E208* 0.62 TCGA-58-8388-01 3 95374541 95374541 A T MTHFD2P1 RNA 0.43 TCGA-58-8388-01 4 113524731 113524731 C T C4orf21 Missense_Mutation p.M975I 0.36 tolerated(0.31) benign(0.025) TCGA-58-8388-01 4 138442150 138442150 T C PCDH18 3'UTR 0.28 TCGA-58-8388-01 4 138442392 138442392 T C PCDH18 Missense_Mutation p.T1067A 0.51 tolerated(0.53) benign(0.002) TCGA-58-8388-01 4 38829894 38829894 C G TLR6 Missense_Mutation p.D401H 0.36 tolerated(0.31) benign(0.001) TCGA-58-8388-01 4 55963856 55963856 T G KDR Silent p.R863R 0.32 TCGA-58-8388-01 4 8284229 8284229 G T HTRA3 Missense_Mutation p.A151S 0.33 deleterious(0.05) possibly_damaging(0.708) TCGA-58-8388-01 5 140176274 140176274 C A PCDHA2 Silent p.G575G 0.52 TCGA-58-8388-01 5 140203652 140203652 C T PCDHA5 Silent p.P764P 0.47 TCGA-58-8388-01 5 140580730 140580730 C T PCDHB11 Silent p.R461R 0.11 TCGA-58-8388-01 5 140615393 140615393 G A PCDHB18 RNA 0.55 TCGA-58-8388-01 5 43412436 43412436 G A CCL28 5'UTR 0.31 TCGA-58-8388-01 6 101109681 101109681 C T ASCC3 Splice_Site p.X901_splice 0.38 TCGA-58-8388-01 6 122779786 122779786 C G SERINC1 Missense_Mutation p.R27P 0.38 tolerated(0.11) possibly_damaging(0.793) TCGA-58-8388-01 6 123376981 123376981 C T CLVS2 Silent p.L236L 0.27 TCGA-58-8388-01 6 128319972 128319972 G T PTPRK Missense_Mutation p.P858T 0.36 deleterious(0.04) probably_damaging(0.996) TCGA-58-8388-01 6 130763101 130763101 G T TMEM200A 3'UTR 0.38 TCGA-58-8388-01 6 151726356 151726356 T C RMND1 3'UTR 0.26 TCGA-58-8388-01 6 157469794 157469798 CCAGT - ARID1B Frame_Shift_Del p.P863Rfs*77 0.23 TCGA-58-8388-01 6 159653150 159653150 C T FNDC1 Nonsense_Mutation p.Q536* 0.41 TCGA-58-8388-01 6 167549810 167549810 C A CCR6 Missense_Mutation p.S31Y 0.28 tolerated(0.57) benign(0.001) TCGA-58-8388-01 6 167755120 167755120 A T TTLL2 Nonsense_Mutation p.R578* 0.45 TCGA-58-8388-01 6 24588828 24588828 G T KIAA0319 Silent p.P329P 0.32 TCGA-58-8388-01 6 25826717 25826717 G C SLC17A1 Missense_Mutation p.S60C 0.29 deleterious(0) probably_damaging(0.989) TCGA-58-8388-01 6 27806734 27806734 G T HIST1H2BN Missense_Mutation p.V99L 0.32 tolerated_low_confidence(0.05) benign(0.008) TCGA-58-8388-01 6 27834971 27834971 T C HIST1H1B Missense_Mutation p.K113E 0.34 deleterious(0) unknown(0) TCGA-58-8388-01 6 30892247 30892247 T A VARS2 Silent p.A891A 0.34 TCGA-58-8388-01 6 33179537 33179537 G T RING1 Missense_Mutation p.D293Y 0.36 deleterious(0) unknown(0) TCGA-58-8388-01 6 34803936 34803936 A C UHRF1BP1 Missense_Mutation p.T282P 0.34 deleterious(0.01) benign(0.027) TCGA-58-8388-01 6 36766239 36766239 G T CPNE5 Missense_Mutation p.S107Y 0.33 tolerated(0.06) probably_damaging(0.917) TCGA-58-8388-01 6 43030704 43030704 A C KLC4 Missense_Mutation p.Q121P 0.30 deleterious(0) probably_damaging(0.98) TCGA-58-8388-01 6 54792427 54792427 A G FAM83B Missense_Mutation p.Y244C 0.30 deleterious(0) probably_damaging(1) TCGA-58-8388-01 6 75840649 75840649 G A COL12A1 Missense_Mutation p.P1996S 0.39 possibly_damaging(0.73) TCGA-58-8388-01 6 94120579 94120579 C A EPHA7 Missense_Mutation p.G158C 0.41 deleterious(0.03) probably_damaging(0.998) TCGA-58-8388-01 7 100780350 100780350 C T SERPINE1 Missense_Mutation p.R386W 0.27 deleterious(0.02) possibly_damaging(0.492) TCGA-58-8388-01 7 101192481 101192481 C - COL26A1 Frame_Shift_Del p.P325Qfs*24 0.28 TCGA-58-8388-01 7 106509137 106509137 C A PIK3CG Silent p.T377T 0.32 TCGA-58-8388-01 7 11076263 11076263 G T PHF14 Missense_Mutation p.R607S 0.34 deleterious(0) probably_damaging(0.991) TCGA-58-8388-01 7 117876112 117876112 A C ANKRD7 Silent p.L162L 0.33 TCGA-58-8388-01 7 142423213 142423213 G T TRBV27 5'UTR 0.35 TCGA-58-8388-01 7 19015437 19015437 T G HDAC9 Missense_Mutation p.W1011G 0.24 deleterious(0) probably_damaging(0.998) TCGA-58-8388-01 7 4304908 4304908 G T SDK1 Silent p.A2178A 0.32 TCGA-58-8388-01 7 4304909 4304909 G T SDK1 Missense_Mutation p.G2179C 0.33 deleterious(0.03) possibly_damaging(0.469) TCGA-58-8388-01 7 50121378 50121378 A G ZPBP Missense_Mutation p.V109A 0.19 tolerated(0.48) benign(0.257) TCGA-58-8388-01 7 86820265 86820265 A T DMTF1 Silent p.S472S 0.41 TCGA-58-8388-01 7 99802861 99802861 T A STAG3 Missense_Mutation p.L1031Q 0.42 deleterious(0) probably_damaging(0.998) TCGA-58-8388-01 8 113988127 113988127 T G CSMD3 Missense_Mutation p.R427S 0.29 tolerated(0.45) benign(0.075) TCGA-58-8388-01 8 144940385 144940385 C G EPPK1 Missense_Mutation p.G2346A 0.07 probably_damaging(0.993) TCGA-58-8388-01 8 144940389 144940389 T G EPPK1 Missense_Mutation p.T2345P 0.07 probably_damaging(0.999) TCGA-58-8388-01 8 38282218 38282218 C G FGFR1 Splice_Site p.X280_splice 0.52 TCGA-58-8388-01 8 67771733 67771733 A G SGK3 Missense_Mutation p.I470V 0.32 tolerated(1) benign(0.012) TCGA-58-8388-01 8 88886137 88886137 C T DCAF4L2 Silent p.V21V 0.33 TCGA-58-8388-01 8 89198760 89198760 G A MMP16 Nonsense_Mutation p.R117* 0.35 TCGA-58-8388-01 9 123476283 123476283 C A MEGF9 Silent p.A118A 0.45 TCGA-58-8388-01 9 127637317 127637317 G A ARPC5L Missense_Mutation p.A96T 0.38 tolerated(0.07) possibly_damaging(0.71) TCGA-58-8388-01 9 132375827 132375827 G T C9orf50 Silent p.S310S 0.32 TCGA-58-8388-01 9 132584866 132584866 C T TOR1A Silent p.L146L 0.34 TCGA-58-8388-01 9 36171000 36171000 A T CCIN Missense_Mutation p.T501S 0.26 tolerated(0.48) benign(0.002) TCGA-58-8388-01 9 93983212 93983212 C A AUH Missense_Mutation p.A240S 0.33 tolerated(0.12) probably_damaging(0.944) TCGA-58-8388-01 X 1407657 1407657 G T CSF2RA Nonsense_Mutation p.E117* 0.53 TCGA-58-8388-01 X 1413281 1413281 G A CSF2RA Missense_Mutation p.R236Q 0.29 tolerated(0.66) benign(0.041) TCGA-58-8388-01 X 150573583 150573583 C T VMA21 3'UTR 0.92 TCGA-58-8388-01 X 1720032 1720032 G T AKAP17A Missense_Mutation p.G545C 0.47 deleterious_low_confidence(0.02) unknown(0) TCGA-58-8388-01 X 29686548 29686548 C A IL1RAPL1 Silent p.A235A 0.58 TCGA-58-8388-01 X 31792304 31792304 T A DMD Missense_Mutation p.T2439S 0.66 benign(0) TCGA-58-8388-01 X 37027487 37027487 C A FAM47C Missense_Mutation p.P335H 0.66 deleterious(0) probably_damaging(0.999) TCGA-58-8388-01 X 48896868 48896868 C A TFE3 Missense_Mutation p.G100C 0.29 deleterious(0.02) unknown(0) TCGA-58-8388-01 X 79985453 79985453 C A BRWD3 Missense_Mutation p.W398C 0.70 deleterious(0.01) benign(0.404) TCGA-58-8391-01 10 104140382 104140382 A G GBF1 Silent p.E1703E 0.59 TCGA-58-8391-01 10 111631579 111631579 C T XPNPEP1 Missense_Mutation p.S498N 0.47 tolerated(0.16) benign(0.157) TCGA-58-8391-01 10 121564954 121564954 C G INPP5F Missense_Mutation p.L434V 0.68 tolerated(0.3) benign(0.002) TCGA-58-8391-01 10 16942633 16942633 G A CUBN Nonsense_Mutation p.Q2801* 0.29 TCGA-58-8391-01 10 48429414 48429414 A T GDF10 Missense_Mutation p.S158T 0.69 tolerated(0.05) possibly_damaging(0.683) TCGA-58-8391-01 10 5435893 5435893 C T TUBAL3 Missense_Mutation p.V310I 0.26 deleterious_low_confidence(0.03) benign(0.092) TCGA-58-8391-01 10 55721543 55721543 T G PCDH15 Missense_Mutation p.N993T 0.31 deleterious(0) probably_damaging(0.998) TCGA-58-8391-01 10 58118371 58118371 G A ZWINT Silent p.P246P 0.30 TCGA-58-8391-01 10 98388177 98388177 A G PIK3AP1 Silent p.S483S 0.65 TCGA-58-8391-01 10 98917613 98917613 C A SLIT1 Silent p.P125P 0.53 TCGA-58-8391-01 11 107403066 107403066 G A ALKBH8 Silent p.L280L 0.12 TCGA-58-8391-01 11 123814051 123814051 G A OR6T1 Silent p.S165S 0.41 TCGA-58-8391-01 11 123886648 123886648 T C OR10G4 Silent p.L123L 0.06 TCGA-58-8391-01 11 123900843 123900843 T C OR10G8 Missense_Mutation p.W172R 0.11 tolerated(0.25) benign(0) TCGA-58-8391-01 11 123900844 123900844 G A OR10G8 Nonsense_Mutation p.W172* 0.11 TCGA-58-8391-01 11 126306784 126306784 C A KIRREL3 Missense_Mutation p.D492Y 0.50 deleterious(0) probably_damaging(0.977) TCGA-58-8391-01 11 134253962 134253962 G A B3GAT1 Missense_Mutation p.P78L 0.13 deleterious(0.02) benign(0.424) TCGA-58-8391-01 11 14856536 14856536 C A PDE3B Missense_Mutation p.R739S 0.47 deleterious(0.02) possibly_damaging(0.802) TCGA-58-8391-01 11 43333747 43333747 G T API5 Splice_Site p.X23_splice 0.14 TCGA-58-8391-01 11 43351532 43351532 G T API5 Missense_Mutation p.R382L 0.42 deleterious(0) probably_damaging(0.973) TCGA-58-8391-01 11 47381559 47381559 G A SPI1 Missense_Mutation p.H60Y 0.39 tolerated(0.17) benign(0.013) TCGA-58-8391-01 11 4824848 4824848 A G OR52R1 Missense_Mutation p.Y255H 0.59 deleterious(0.02) probably_damaging(1) TCGA-58-8391-01 11 4825241 4825241 C A OR52R1 Missense_Mutation p.D124Y 0.60 deleterious(0) probably_damaging(0.925) TCGA-58-8391-01 11 5411472 5411472 C G OR51M1 Missense_Mutation p.P282A 0.43 tolerated(0.06) possibly_damaging(0.548) TCGA-58-8391-01 11 55703671 55703671 G T OR5I1 Nonsense_Mutation p.S69* 0.39 TCGA-58-8391-01 11 56380911 56380911 A G OR5M1 Missense_Mutation p.L23P 0.42 deleterious(0) possibly_damaging(0.824) TCGA-58-8391-01 11 57176692 57176692 T C SLC43A3 Missense_Mutation p.I443V 0.61 tolerated(0.11) benign(0.008) TCGA-58-8391-01 11 58949549 58949549 G T DTX4 Silent p.S183S 0.38 TCGA-58-8391-01 11 61050356 61050356 G C VWCE Missense_Mutation p.T188S 0.21 tolerated(0.23) benign(0.1) TCGA-58-8391-01 11 61058289 61058289 C G VWCE Missense_Mutation p.V136L 0.25 tolerated(0.25) benign(0.17) TCGA-58-8391-01 11 61290682 61290682 C A SYT7 Silent p.T399T 0.38 TCGA-58-8391-01 11 61917630 61917630 C T INCENP Silent p.S831S 0.46 TCGA-58-8391-01 11 63381547 63381547 C T PLA2G16 5'UTR 0.27 TCGA-58-8391-01 11 64822205 64822205 C G NAALADL1 Silent p.V203V 0.20 TCGA-58-8391-01 11 65004190 65004190 C T SLC22A20 RNA 0.19 TCGA-58-8391-01 11 65404134 65404134 C A PCNXL3 Missense_Mutation p.P1956T 0.40 deleterious_low_confidence(0.01) benign(0.134) TCGA-58-8391-01 11 67132531 67132531 G T CLCF1 3'UTR 0.29 TCGA-58-8391-01 11 67933507 67933507 G A SUV420H1 Intron 0.32 TCGA-58-8391-01 11 6867534 6867534 G A OR10A5 Silent p.V207V 0.59 TCGA-58-8391-01 11 71847022 71847022 G T FOLR3 Missense_Mutation p.M8I 0.11 tolerated(0.67) unknown(0) TCGA-58-8391-01 11 76062432 76062432 G T PRKRIR Missense_Mutation p.Q588K 0.19 tolerated(0.2) benign(0.082) TCGA-58-8391-01 11 85375914 85375914 C T CREBZF Silent p.R2R 0.56 TCGA-58-8391-01 12 102021561 102021561 G C MYBPC1 Intron 0.34 TCGA-58-8391-01 12 108985817 108985817 C A TMEM119 Missense_Mutation p.A115S 0.22 deleterious(0) probably_damaging(0.999) TCGA-58-8391-01 12 113909131 113909131 C T LHX5 Missense_Mutation p.R58K 0.29 tolerated(0.19) possibly_damaging(0.51) TCGA-58-8391-01 12 118199236 118199236 G C KSR2 Missense_Mutation p.P189R 0.34 tolerated(0.06) benign(0.027) TCGA-58-8391-01 12 123187270 123187270 C G HCAR2 Missense_Mutation p.Q187H 0.37 tolerated(0.05) benign(0.002) TCGA-58-8391-01 12 123214961 123214961 C A HCAR1 5'UTR 0.27 TCGA-58-8391-01 12 124497228 124497228 G T ZNF664 Silent p.A179A 0.37 TCGA-58-8391-01 12 14995997 14995997 T C ART4 Silent p.V17V 0.19 TCGA-58-8391-01 12 20769216 20769216 G T PDE3A Missense_Mutation p.W441L 0.16 deleterious(0.02) probably_damaging(0.998) TCGA-58-8391-01 12 20769217 20769217 G T PDE3A Missense_Mutation p.W441C 0.16 deleterious(0) probably_damaging(0.999) TCGA-58-8391-01 12 21358879 21358879 G - SLCO1B1 Frame_Shift_Del p.E471Nfs*9 0.17 TCGA-58-8391-01 12 21919120 21919120 A T KCNJ8 Missense_Mutation p.I271N 0.13 deleterious(0) probably_damaging(1) TCGA-58-8391-01 12 22796840 22796840 G T ETNK1 Missense_Mutation p.L189F 0.24 deleterious(0.03) probably_damaging(1) TCGA-58-8391-01 12 31551121 31551121 C T DENND5B Missense_Mutation p.G1082R 0.19 tolerated(0.08) benign(0.365) TCGA-58-8391-01 12 43833446 43833446 C A ADAMTS20 Missense_Mutation p.G858C 0.43 deleterious(0) possibly_damaging(0.649) TCGA-58-8391-01 12 49743439 49743439 A G DNAJC22 Missense_Mutation p.K262E 0.26 tolerated(0.17) benign(0.221) TCGA-58-8391-01 12 53011924 53011924 G T KRT73 Missense_Mutation p.R129S 0.34 deleterious(0) possibly_damaging(0.571) TCGA-58-8391-01 12 70989883 70989883 T G PTPRB Missense_Mutation p.T402P 0.50 tolerated(0.13) possibly_damaging(0.713) TCGA-58-8391-01 12 71155365 71155365 G C PTPRR Missense_Mutation p.N171K 0.26 deleterious(0.01) benign(0.21) TCGA-58-8391-01 12 7177303 7177303 C T C1S Missense_Mutation p.T472M 0.09 deleterious(0) probably_damaging(1) TCGA-58-8391-01 12 7177556 7177556 C G C1S Missense_Mutation p.D556E 0.25 tolerated(1) benign(0.001) TCGA-58-8391-01 12 75741494 75741494 C A GLIPR1L1 Nonsense_Mutation p.Y171* 0.36 TCGA-58-8391-01 12 78225281 78225281 G T NAV3 Missense_Mutation p.A14S 0.36 tolerated_low_confidence(0.22) benign(0.046) TCGA-58-8391-01 12 81839470 81839470 C A PPFIA2 Silent p.V145V 0.18 TCGA-58-8391-01 12 85638594 85638594 G C LRRIQ1 Missense_Mutation p.D1682H 0.26 deleterious(0) probably_damaging(1) TCGA-58-8391-01 12 97043704 97043704 A G C12orf55 Missense_Mutation p.M1576V 0.22 tolerated(0.51) benign(0.01) TCGA-58-8391-01 12 98938031 98938032 TG - TMPO Frame_Shift_Del p.E230Dfs*2 0.18 TCGA-58-8391-01 13 101710340 101710340 G T NALCN Silent p.A1658A 0.49 TCGA-58-8391-01 13 111130505 111130505 C T COL4A2 Missense_Mutation p.R861C 0.50 probably_damaging(0.977) TCGA-58-8391-01 13 25827976 25827976 C T MTMR6 Silent p.Q424Q 0.24 TCGA-58-8391-01 14 102026662 102026662 C A DIO3 5'Flank 0.12 TCGA-58-8391-01 14 106780743 106780743 A T IGHV4-28 Missense_Mutation p.C41S 0.26 deleterious(0.01) probably_damaging(0.938) TCGA-58-8391-01 14 106829834 106829834 G A IGHV4-34 Silent p.T43T 0.29 TCGA-58-8391-01 14 106926477 106926477 T A IGHV3-43 Missense_Mutation p.Q22L 0.32 deleterious_low_confidence(0.01) benign(0.231) TCGA-58-8391-01 14 20846201 20846201 C A TEP1 Silent p.T1901T 0.20 TCGA-58-8391-01 14 21424570 21424570 C G RNASE2 3'UTR 0.43 TCGA-58-8391-01 14 23299122 23299122 A G MRPL52 Translation_Start_Site p.M1? 0.13 deleterious_low_confidence(0.01) benign(0.043) TCGA-58-8391-01 14 24113650 24113650 G T DHRS2 Silent p.A191A 0.43 TCGA-58-8391-01 14 51561134 51561134 G A TRIM9 Missense_Mutation p.P175L 0.30 deleterious(0) possibly_damaging(0.854) TCGA-58-8391-01 14 57938030 57938030 A C C14orf105 3'UTR 0.22 TCGA-58-8391-01 14 65266598 65266598 C A SPTB Missense_Mutation p.A311S 0.23 tolerated(0.14) probably_damaging(0.913) TCGA-58-8391-01 14 68217657 68217657 C G ZFYVE26 Intron 0.33 TCGA-58-8391-01 14 69262570 69262570 C G ZFP36L1 5'Flank 0.24 TCGA-58-8391-01 14 75265352 75265352 G T YLPM1 Missense_Mutation p.G1118C 0.30 probably_damaging(0.977) TCGA-58-8391-01 14 88407766 88407766 C G GALC Missense_Mutation p.G603R 0.26 deleterious(0.03) possibly_damaging(0.838) TCGA-58-8391-01 14 93022140 93022140 A G RIN3 Missense_Mutation p.D30G 0.24 tolerated(0.17) unknown(0) TCGA-58-8391-01 14 94718229 94718229 G A PPP4R4 Missense_Mutation p.V621M 0.11 deleterious(0) possibly_damaging(0.798) TCGA-58-8391-01 15 100250888 100250888 G A MEF2A Silent p.S347S 0.25 TCGA-58-8391-01 15 23889128 23889128 C T MAGEL2 3'UTR 0.51 TCGA-58-8391-01 15 29385409 29385409 G A APBA2 Missense_Mutation p.V401I 0.29 deleterious(0.02) possibly_damaging(0.846) TCGA-58-8391-01 15 39881465 39881465 C A THBS1 Missense_Mutation p.D612E 0.34 tolerated(0.97) benign(0.005) TCGA-58-8391-01 15 41679634 41679634 T - NDUFAF1 3'UTR 0.31 TCGA-58-8391-01 15 42054005 42054005 T C MGA Silent p.T2489T 0.25 TCGA-58-8391-01 15 43348553 43348553 C A UBR1 Missense_Mutation p.V424F 0.44 deleterious(0) probably_damaging(0.956) TCGA-58-8391-01 15 51503131 51503132 TG - CYP19A1 Frame_Shift_Del p.T462Ifs*7 0.29 TCGA-58-8391-01 15 51763571 51763571 T C DMXL2 Missense_Mutation p.D2414G 0.41 tolerated(0.1) probably_damaging(0.911) TCGA-58-8391-01 15 54003081 54003081 C G WDR72 Silent p.L309L 0.33 TCGA-58-8391-01 15 63019354 63019354 G C TLN2 Silent p.L1108L 0.10 TCGA-58-8391-01 15 63131142 63131142 G T TLN2 Missense_Mutation p.V2488F 0.36 deleterious(0.01) possibly_damaging(0.673) TCGA-58-8391-01 15 63419132 63419132 A - LACTB Frame_Shift_Del p.S168Vfs*46 0.31 TCGA-58-8391-01 15 64449197 64449197 T C SNX22 3'UTR 0.61 TCGA-58-8391-01 15 90294002 90294002 C A MESP1 Missense_Mutation p.R154L 0.47 tolerated(0.34) benign(0.011) TCGA-58-8391-01 15 90294389 90294389 G A MESP1 Missense_Mutation p.P25L 0.28 tolerated_low_confidence(0.19) benign(0.003) TCGA-58-8391-01 16 14702930 14702930 A C PARN Nonsense_Mutation p.L202* 0.38 TCGA-58-8391-01 16 1840815 1840815 C T IGFALS Missense_Mutation p.G573D 0.36 tolerated(0.13) benign(0.144) TCGA-58-8391-01 16 19548279 19548279 A G CCP110 Missense_Mutation p.T430A 0.30 tolerated(0.67) benign(0) TCGA-58-8391-01 16 21078654 21078654 G A DNAH3 Silent p.I1156I 0.45 TCGA-58-8391-01 16 2167672 2167672 C T PKD1 Silent p.A401A 0.43 TCGA-58-8391-01 16 30035142 30035142 C A C16orf92 Missense_Mutation p.D75E 0.41 deleterious(0.01) benign(0.025) TCGA-58-8391-01 16 32891806 32891806 T A SLC6A10P RNA 0.30 TCGA-58-8391-01 16 5141800 5141800 A G FAM86A Silent p.L113L 0.14 TCGA-58-8391-01 16 57559912 57559912 G T CCDC102A Missense_Mutation p.P238H 0.37 tolerated(0.15) possibly_damaging(0.849) TCGA-58-8391-01 16 71798323 71798323 T G AP1G1 Missense_Mutation p.N286T 0.32 tolerated(0.1) probably_damaging(0.944) TCGA-58-8391-01 16 89924911 89924911 C A SPIRE2 Missense_Mutation p.S423Y 0.40 deleterious(0.04) benign(0.251) TCGA-58-8391-01 17 10212862 10212862 G A MYH13 Missense_Mutation p.R1648C 0.75 deleterious(0.02) benign(0.019) TCGA-58-8391-01 17 10296235 10296235 C A MYH8 Silent p.T1792T 0.70 TCGA-58-8391-01 17 10551949 10551949 T A MYH3 Missense_Mutation p.Q220H 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-58-8391-01 17 1678483 1678483 C A SERPINF1 Missense_Mutation p.L259I 0.72 deleterious(0.01) probably_damaging(0.989) TCGA-58-8391-01 17 19699548 19699548 C T ULK2 Silent p.L619L 0.23 TCGA-58-8391-01 17 21319880 21319880 G A KCNJ12 Missense_Mutation p.R409K 0.15 tolerated_low_confidence(0.67) benign(0.001) TCGA-58-8391-01 17 37899459 37899459 G A GRB7 Missense_Mutation p.V187M 0.01 deleterious(0.02) possibly_damaging(0.858) TCGA-58-8391-01 17 39577618 39577618 C A KRT37 Splice_Site p.X414_splice 0.08 TCGA-58-8391-01 17 43013428 43013428 G C KIF18B Missense_Mutation p.D95E 0.33 tolerated(0.08) probably_damaging(0.999) TCGA-58-8391-01 17 43311567 43311567 A G FMNL1 Missense_Mutation p.K205R 0.30 tolerated(1) unknown(0) TCGA-58-8391-01 17 4349486 4349486 C T SPNS3 Silent p.P182P 0.54 TCGA-58-8391-01 17 47022115 47022115 G A SNF8 5'UTR 0.39 TCGA-58-8391-01 17 54892321 54892321 G A C17orf67 Missense_Mutation p.P22L 0.38 deleterious(0) probably_damaging(0.999) TCGA-58-8391-01 17 56356492 56356492 T C MPO Silent p.Q254Q 0.32 TCGA-58-8391-01 17 56540463 56540463 C T HSF5 Missense_Mutation p.G408S 0.45 tolerated(0.19) benign(0.057) TCGA-58-8391-01 17 57298011 57298011 G A GDPD1 Missense_Mutation p.G14E 0.29 deleterious(0) possibly_damaging(0.894) TCGA-58-8391-01 17 59668492 59668492 G - NACA2 Frame_Shift_Del p.P17Rfs*105 0.26 TCGA-58-8391-01 17 72619782 72619782 G A CD300E 5'UTR 0.19 TCGA-58-8391-01 17 73956382 73956382 G A ACOX1 Missense_Mutation p.A115V 0.17 deleterious(0.03) benign(0.195) TCGA-58-8391-01 17 7577547 7577547 C A TP53 Missense_Mutation p.G245V 0.68 deleterious(0) probably_damaging(1) TCGA-58-8391-01 17 76046783 76046783 G A TNRC6C Missense_Mutation p.S547N 0.29 tolerated(1) benign(0.001) TCGA-58-8391-01 17 7605786 7605786 C T WRAP53 Silent p.L360L 0.37 TCGA-58-8391-01 17 7646456 7646456 G C DNAH2 Missense_Mutation p.D634H 0.35 probably_damaging(0.981) TCGA-58-8391-01 17 78293299 78293299 G A RNF213 Intron 0.31 TCGA-58-8391-01 17 8274654 8274654 C T KRBA2 Missense_Mutation p.D67N 0.70 tolerated_low_confidence(0.11) benign(0.005) TCGA-58-8391-01 17 8732128 8732128 C T PIK3R6 Missense_Mutation p.G357S 0.82 tolerated(0.91) benign(0.009) TCGA-58-8391-01 18 13113617 13113617 G A CEP192 Silent p.G2360G 0.16 TCGA-58-8391-01 18 224158 224158 C G THOC1 Silent p.T410T 0.48 TCGA-58-8391-01 18 29867330 29867330 C A GAREM Silent p.G410G 0.40 TCGA-58-8391-01 18 30092301 30092301 C A WBP11P1 RNA 0.17 TCGA-58-8391-01 18 42533143 42533143 G T SETBP1 Missense_Mutation p.V1280L 0.40 tolerated(1) benign(0.043) TCGA-58-8391-01 18 50432656 50432656 A T DCC Missense_Mutation p.S219C 0.16 deleterious(0.01) probably_damaging(0.935) TCGA-58-8391-01 18 55103410 55103410 C A ONECUT2 Silent p.L154L 0.18 TCGA-58-8391-01 18 580773 580773 C A CETN1 Nonsense_Mutation p.S122* 0.52 TCGA-58-8391-01 18 627361 627361 C T CLUL1 Missense_Mutation p.P230S 0.60 deleterious(0.03) probably_damaging(0.941) TCGA-58-8391-01 18 732913 732913 C G YES1 Silent p.R448R 0.19 TCGA-58-8391-01 19 10946853 10946853 G C TMED1 Silent p.G5G 0.46 TCGA-58-8391-01 19 12014727 12014727 T G ZNF69 Missense_Mutation p.S52R 0.48 deleterious(0.04) benign(0) TCGA-58-8391-01 19 12995826 12995826 G T KLF1 Missense_Mutation p.A321E 0.16 deleterious(0) possibly_damaging(0.862) TCGA-58-8391-01 19 14023155 14023155 C T CC2D1A Silent p.A72A 0.47 TCGA-58-8391-01 19 15586505 15586505 G T PGLYRP2 Missense_Mutation p.L326M 0.27 deleterious(0) probably_damaging(0.999) TCGA-58-8391-01 19 17571410 17571410 A T NXNL1 Missense_Mutation p.F90Y 0.25 tolerated(0.27) benign(0.38) TCGA-58-8391-01 19 17728529 17728529 G C UNC13A Missense_Mutation p.Q1514E 0.42 tolerated(0.6) benign(0.345) TCGA-58-8391-01 19 19136957 19136957 C G SUGP2 Missense_Mutation p.G67A 0.13 tolerated(0.13) benign(0.01) TCGA-58-8391-01 19 20002861 20002861 A G ZNF253 Missense_Mutation p.T269A 0.19 deleterious(0.05) benign(0.029) TCGA-58-8391-01 19 2918215 2918215 C A ZNF57 Missense_Mutation p.H532Q 0.26 deleterious(0) possibly_damaging(0.725) TCGA-58-8391-01 19 33792496 33792496 C T CEBPA Silent p.K275K 0.30 TCGA-58-8391-01 19 42231272 42231272 G C CEACAM5 Intron 0.25 TCGA-58-8391-01 19 43236987 43236987 G A PSG3 Missense_Mutation p.R220W 0.24 tolerated(0.16) benign(0.005) TCGA-58-8391-01 19 45655338 45655338 G C NKPD1 Missense_Mutation p.A786G 0.44 deleterious_low_confidence(0.02) benign(0.12) TCGA-58-8391-01 19 47978612 47978612 C A KPTN 3'UTR 0.47 TCGA-58-8391-01 19 49340593 49340593 C T PLEKHA4 Missense_Mutation p.E765K 0.18 deleterious_low_confidence(0) benign(0.359) TCGA-58-8391-01 19 51379741 51379741 T C KLK2 Missense_Mutation p.W74R 0.23 tolerated(0.3) benign(0.405) TCGA-58-8391-01 19 52271976 52271976 A T FPR2 Missense_Mutation p.Y22F 0.56 tolerated(0.14) benign(0.031) TCGA-58-8391-01 19 54081197 54081197 C A ZNF331 Missense_Mutation p.H461Q 0.16 deleterious(0) benign(0.092) TCGA-58-8391-01 19 54976473 54976473 G C CDC42EP5 Missense_Mutation p.P87A 0.62 tolerated(0.34) probably_damaging(0.986) TCGA-58-8391-01 19 55377855 55377855 G C KIR3DL2 Missense_Mutation p.G379A 0.13 tolerated(0.66) benign(0.02) TCGA-58-8391-01 19 5680569 5680569 T A C19orf70 5'UTR 0.47 TCGA-58-8391-01 19 58563886 58563886 C A ZSCAN1 Missense_Mutation p.A165E 0.21 tolerated(0.14) benign(0.18) TCGA-58-8391-01 19 757337 757337 G T MISP Missense_Mutation p.A131S 0.54 tolerated(0.19) benign(0.052) TCGA-58-8391-01 19 7585569 7585569 G A ZNF358 Missense_Mutation p.G481S 0.17 tolerated_low_confidence(0.07) benign(0.013) TCGA-58-8391-01 19 9066358 9066358 T C MUC16 Missense_Mutation p.I7030V 0.22 unknown(0) TCGA-58-8391-01 19 9066816 9066816 A C MUC16 Missense_Mutation p.I6877R 0.21 unknown(0) TCGA-58-8391-01 19 9212999 9212999 C - OR7G2 Frame_Shift_Del p.I329Yfs*16 0.29 TCGA-58-8391-01 1 103352410 103352410 G T COL11A1 Missense_Mutation p.A1604D 0.24 unknown(0) TCGA-58-8391-01 1 104203225 104203225 T A AMY1A Missense_Mutation p.M343K 0.71 deleterious(0) probably_damaging(0.999) TCGA-58-8391-01 1 112998625 112998625 G A CTTNBP2NL Missense_Mutation p.E171K 0.19 deleterious(0) probably_damaging(0.998) TCGA-58-8391-01 1 113459947 113459947 C A SLC16A1 Nonsense_Mutation p.G361* 0.33 TCGA-58-8391-01 1 11561243 11561243 G A PTCHD2 Missense_Mutation p.G65D 0.57 deleterious_low_confidence(0) probably_damaging(1) TCGA-58-8391-01 1 145290477 145290477 C G NOTCH2NL 3'Flank 0.03 TCGA-58-8391-01 1 147380573 147380573 G T GJA8 Missense_Mutation p.G164V 0.15 deleterious(0) possibly_damaging(0.897) TCGA-58-8391-01 1 149916876 149916876 G A OTUD7B Missense_Mutation p.S471L 0.53 deleterious(0.01) possibly_damaging(0.905) TCGA-58-8391-01 1 150199056 150199056 C G ANP32E Missense_Mutation p.E189Q 0.21 tolerated(0.1) unknown(0) TCGA-58-8391-01 1 155721920 155721920 C A GON4L Missense_Mutation p.D2101Y 0.17 deleterious_low_confidence(0.01) probably_damaging(0.934) TCGA-58-8391-01 1 156848964 156848964 C A NTRK1 Missense_Mutation p.P619Q 0.14 tolerated(0.54) benign(0.42) TCGA-58-8391-01 1 157804362 157804362 C G CD5L Missense_Mutation p.V185L 0.55 tolerated(0.64) benign(0.01) TCGA-58-8391-01 1 158325957 158325957 G T CD1E Intron 0.20 TCGA-58-8391-01 1 159558486 159558486 G T APCS Missense_Mutation p.L220F 0.22 tolerated(0.42) benign(0.401) TCGA-58-8391-01 1 161179382 161179382 G A NDUFS2 Silent p.E208E 0.52 TCGA-58-8391-01 1 167384976 167384976 A T POU2F1 Missense_Mutation p.N744Y 0.53 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-58-8391-01 1 169510875 169510875 T C F5 Silent p.P1151P 0.22 TCGA-58-8391-01 1 173839833 173839833 C A ZBTB37 Missense_Mutation p.P157Q 0.53 tolerated(0.5) benign(0.004) TCGA-58-8391-01 1 175299244 175299244 G T TNR Nonsense_Mutation p.Y1253* 0.15 TCGA-58-8391-01 1 184690466 184690466 T C EDEM3 Missense_Mutation p.Y303C 0.58 deleterious(0) probably_damaging(1) TCGA-58-8391-01 1 190067590 190067590 G C BRINP3 Missense_Mutation p.T620R 0.15 deleterious(0) possibly_damaging(0.518) TCGA-58-8391-01 1 207780628 207780628 G T CR1 Missense_Mutation p.C1948F 0.26 deleterious(0) possibly_damaging(0.787) TCGA-58-8391-01 1 215955396 215955396 G T USH2A Silent p.A3576A 0.37 TCGA-58-8391-01 1 228547496 228547496 C A OBSCN Intron 0.17 TCGA-58-8391-01 1 237632477 237632477 A C RYR2 Missense_Mutation p.E566D 0.14 possibly_damaging(0.6) TCGA-58-8391-01 1 240371050 240371050 C G FMN2 Missense_Mutation p.P980A 0.15 unknown(0) TCGA-58-8391-01 1 240371599 240371599 C A FMN2 Missense_Mutation p.P1163T 0.38 unknown(0) TCGA-58-8391-01 1 244715820 244715820 G A C1orf101 Missense_Mutation p.A245T 0.46 tolerated(0.38) benign(0.065) TCGA-58-8391-01 1 247588270 247588270 C G NLRP3 Missense_Mutation p.Q509E 0.39 deleterious(0) benign(0.241) TCGA-58-8391-01 1 247875356 247875356 C A OR6F1 Silent p.R234R 0.44 TCGA-58-8391-01 1 248039539 248039539 C A TRIM58 Silent p.L403L 0.48 TCGA-58-8391-01 1 248039540 248039540 C A TRIM58 Missense_Mutation p.Q404K 0.48 tolerated(0.34) benign(0.063) TCGA-58-8391-01 1 248059740 248059740 C T OR2W3 Silent p.L284L 0.12 TCGA-58-8391-01 1 248403035 248403035 G A OR2M4 Missense_Mutation p.D269N 0.19 tolerated(0.53) benign(0.008) TCGA-58-8391-01 1 248487413 248487413 G C OR2M7 Missense_Mutation p.S153C 0.20 tolerated(0.06) benign(0.111) TCGA-58-8391-01 1 248569665 248569665 A G OR2T1 Missense_Mutation p.I124V 0.21 tolerated(0.29) benign(0.2) TCGA-58-8391-01 1 34667789 34667789 C G C1orf94 Missense_Mutation p.P459A 0.20 deleterious(0.01) probably_damaging(1) TCGA-58-8391-01 1 3527859 3527859 T C MEGF6 5'UTR 0.36 TCGA-58-8391-01 1 37307426 37307426 A T GRIK3 Missense_Mutation p.Y481N 0.22 deleterious(0) probably_damaging(0.998) TCGA-58-8391-01 1 39987072 39987072 C T BMP8A Missense_Mutation p.A233V 0.27 tolerated(0.12) benign(0.113) TCGA-58-8391-01 1 49208339 49208339 C T BEND5 Missense_Mutation p.A284T 0.18 tolerated(0.19) benign(0.005) TCGA-58-8391-01 1 6418968 6418968 A G ACOT7 Intron 0.80 TCGA-58-8391-01 1 67292596 67292596 A G WDR78 Missense_Mutation p.V749A 0.22 tolerated(0.6) benign(0.124) TCGA-58-8391-01 1 68947991 68947991 C - DEPDC1 Frame_Shift_Del p.K501Nfs*15 0.34 TCGA-58-8391-01 1 72748098 72748098 A T NEGR1 Missense_Mutation p.L27Q 0.16 deleterious(0.04) possibly_damaging(0.823) TCGA-58-8391-01 1 75037295 75037295 C A C1orf173 Nonsense_Mutation p.E1367* 0.46 TCGA-58-8391-01 1 76877726 76877726 G T ST6GALNAC3 Missense_Mutation p.V83L 0.22 possibly_damaging(0.447) TCGA-58-8391-01 20 2604953 2604953 C T TMC2 Silent p.T739T 0.26 TCGA-58-8391-01 20 31622917 31622917 G C BPIFB6 Silent p.L161L 0.46 TCGA-58-8391-01 20 62121969 62121969 C A EEF1A2 Missense_Mutation p.A298S 0.19 tolerated_low_confidence(0.35) benign(0.032) TCGA-58-8391-01 20 62730135 62730135 G T OPRL1 Missense_Mutation p.V366L 0.40 tolerated(0.48) benign(0.036) TCGA-58-8391-01 21 31874304 31874304 C T KRTAP19-5 Silent p.L35L 0.40 TCGA-58-8391-01 22 19363316 19363316 C A HIRA Splice_Site p.X538_splice 0.61 TCGA-58-8391-01 22 23438399 23438399 G A GNAZ Missense_Mutation p.E173K 0.44 deleterious(0) benign(0.439) TCGA-58-8391-01 22 31301935 31301935 G A OSBP2 Missense_Mutation p.M829I 0.47 deleterious(0) probably_damaging(0.997) TCGA-58-8391-01 22 36537978 36537978 T C APOL3 Missense_Mutation p.K160R 0.22 tolerated(0.15) benign(0.004) TCGA-58-8391-01 22 47068887 47068887 C G GRAMD4 Nonsense_Mutation p.S411* 0.33 TCGA-58-8391-01 2 103299859 103299859 A T SLC9A2 Missense_Mutation p.T382S 0.39 deleterious(0.02) probably_damaging(0.996) TCGA-58-8391-01 2 128409060 128409060 T C GPR17 Missense_Mutation p.Y279H 0.19 deleterious(0) probably_damaging(1) TCGA-58-8391-01 2 140992394 140992394 G C LRP1B Missense_Mutation p.I4540M 0.23 benign(0) TCGA-58-8391-01 2 141260602 141260602 C G LRP1B Missense_Mutation p.Q2864H 0.50 possibly_damaging(0.522) TCGA-58-8391-01 2 158627014 158627014 T C ACVR1 Missense_Mutation p.Y219C 0.32 deleterious(0) probably_damaging(0.989) TCGA-58-8391-01 2 167134815 167134815 A G SCN9A Silent p.T773T 0.61 TCGA-58-8391-01 2 167262109 167262109 G T SCN7A Missense_Mutation p.P1677H 0.25 tolerated(0.08) benign(0.332) TCGA-58-8391-01 2 167322014 167322014 C G SCN7A Missense_Mutation p.G300A 0.50 deleterious(0.01) probably_damaging(0.993) TCGA-58-8391-01 2 168102592 168102592 G T XIRP2 Missense_Mutation p.V1564F 0.21 benign(0.315) TCGA-58-8391-01 2 168114830 168114830 C G XIRP2 3'UTR 0.44 TCGA-58-8391-01 2 170502615 170502615 A G CCDC173 Silent p.A465A 0.21 TCGA-58-8391-01 2 179395855 179395855 G A TTN Silent p.L35163L 0.13 TCGA-58-8391-01 2 179432638 179432638 C A TTN Missense_Mutation p.G26074V 0.22 TCGA-58-8391-01 2 179439931 179439931 A T TTN Missense_Mutation p.V23643D 0.46 TCGA-58-8391-01 2 179440244 179440244 G A TTN Missense_Mutation p.L23539F 0.51 TCGA-58-8391-01 2 179489330 179489330 G C TTN Missense_Mutation p.L14893V 0.12 TCGA-58-8391-01 2 179600252 179600252 G A TTN Missense_Mutation p.T4974I 0.23 TCGA-58-8391-01 2 179600346 179600346 C G TTN Missense_Mutation p.A4943P 0.12 TCGA-58-8391-01 2 179604737 179604737 G T TTN Missense_Mutation p.A4408D 0.20 TCGA-58-8391-01 2 179616315 179616315 C G TTN Intron 0.58 TCGA-58-8391-01 2 202593291 202593291 C A ALS2 Missense_Mutation p.G929W 0.74 deleterious(0) probably_damaging(0.998) TCGA-58-8391-01 2 203831758 203831759 - A CARF Frame_Shift_Ins p.V300Sfs*3 0.69 TCGA-58-8391-01 2 220315898 220315898 C G SPEG Silent p.P718P 0.67 TCGA-58-8391-01 2 238275431 238275431 C G COL6A3 Missense_Mutation p.G1800A 0.78 benign(0.085) TCGA-58-8391-01 2 238283544 238283544 G T COL6A3 Silent p.R1064R 0.16 TCGA-58-8391-01 2 29147960 29147960 G A WDR43 Missense_Mutation p.D343N 0.29 deleterious(0.04) benign(0.111) TCGA-58-8391-01 2 29240751 29240751 G T FAM179A Missense_Mutation p.W430L 0.31 deleterious(0.02) benign(0.005) TCGA-58-8391-01 2 32773002 32773002 C G BIRC6 Missense_Mutation p.S4299C 0.26 probably_damaging(0.995) TCGA-58-8391-01 2 46605800 46605800 A G EPAS1 Missense_Mutation p.N483S 0.45 tolerated(1) benign(0) TCGA-58-8391-01 2 54482158 54482158 T A TSPYL6 Silent p.P377P 0.34 TCGA-58-8391-01 2 54856409 54856409 A C SPTBN1 Missense_Mutation p.E713A 0.28 tolerated(0.45) benign(0.006) TCGA-58-8391-01 2 55812250 55812250 T A SMEK2 Silent p.L390L 0.30 TCGA-58-8391-01 2 5833158 5833158 C T SOX11 Missense_Mutation p.A102V 0.29 deleterious(0) probably_damaging(0.999) TCGA-58-8391-01 2 69330024 69330024 G T ANTXR1 Missense_Mutation p.V252L 0.32 tolerated(0.32) benign(0.131) TCGA-58-8391-01 2 73520332 73520332 G C EGR4 Silent p.P141P 0.35 TCGA-58-8391-01 2 76975813 76975813 C T LRRTM4 3'UTR 0.23 TCGA-58-8391-01 2 88405950 88405950 A T SMYD1 Missense_Mutation p.Y363F 0.36 tolerated(0.23) benign(0.004) TCGA-58-8391-01 2 89309574 89309574 C A IGKV1-9 Missense_Mutation p.G86C 0.41 deleterious_low_confidence(0) probably_damaging(1) TCGA-58-8391-01 2 89521863 89521863 C A IGKV2-28 Splice_Site p.X17_splice 0.48 TCGA-58-8391-01 2 97482046 97482046 T A CNNM3 Nonsense_Mutation p.L11* 0.35 TCGA-58-8391-01 2 97530048 97530048 T C SEMA4C Missense_Mutation p.Y345C 0.35 deleterious(0) probably_damaging(0.974) TCGA-58-8391-01 2 99720576 99720576 A C TSGA10 Missense_Mutation p.D155E 0.35 tolerated(0.65) benign(0.057) TCGA-58-8391-01 3 102153880 102153880 C A ZPLD1 5'UTR 0.37 TCGA-58-8391-01 3 108572898 108572898 G T TRAT1 3'UTR 0.27 TCGA-58-8391-01 3 114027108 114027108 G T TIGIT 3'UTR 0.45 TCGA-58-8391-01 3 124415045 124415045 T G AC080008.1 3'Flank 0.22 TCGA-58-8391-01 3 127399153 127399153 G A ABTB1 Silent p.E424E 0.23 TCGA-58-8391-01 3 133368475 133368475 G T TOPBP1 Missense_Mutation p.P419H 0.21 deleterious(0) probably_damaging(0.984) TCGA-58-8391-01 3 148903057 148903057 C T CP Missense_Mutation p.E752K 0.25 deleterious(0.03) probably_damaging(0.956) TCGA-58-8391-01 3 15529712 15529712 C G COLQ Splice_Site p.X107_splice 0.58 TCGA-58-8391-01 3 155838482 155838482 G T KCNAB1 Missense_Mutation p.V28L 0.54 tolerated_low_confidence(0.54) benign(0) TCGA-58-8391-01 3 160155867 160155867 G C TRIM59 Missense_Mutation p.L369V 0.12 tolerated(0.43) benign(0.004) TCGA-58-8391-01 3 167217985 167217985 T C WDR49 Missense_Mutation p.E644G 0.24 tolerated(0.06) benign(0.282) TCGA-58-8391-01 3 172607379 172607379 T G SPATA16 Missense_Mutation p.Q564P 0.29 deleterious_low_confidence(0.01) benign(0.293) TCGA-58-8391-01 3 179472540 179472540 G T USP13 Missense_Mutation p.D607Y 0.20 deleterious(0) possibly_damaging(0.905) TCGA-58-8391-01 3 180324278 180324278 A - TTC14 Frame_Shift_Del p.G355Efs*3 0.23 TCGA-58-8391-01 3 184070899 184070899 C G CLCN2 Missense_Mutation p.G689R 0.44 tolerated(0.52) benign(0.003) TCGA-58-8391-01 3 184104656 184104656 G C CHRD Silent p.P740P 0.15 TCGA-58-8391-01 3 196296168 196296168 G A FBXO45 Missense_Mutation p.A105T 0.15 tolerated(0.53) benign(0.01) TCGA-58-8391-01 3 197420616 197420616 C A KIAA0226 Missense_Mutation p.A586S 0.18 tolerated(0.23) benign(0.042) TCGA-58-8391-01 3 38101264 38101264 C T DLEC1 Silent p.S198S 0.28 TCGA-58-8391-01 3 46873394 46873394 T C PRSS42 Missense_Mutation p.Y255C 0.64 deleterious(0) probably_damaging(0.992) TCGA-58-8391-01 3 52256416 52256416 C T TLR9 Missense_Mutation p.R793H 0.68 tolerated(0.57) benign(0.001) TCGA-58-8391-01 3 57139882 57139882 C G IL17RD Intron 0.48 TCGA-58-8391-01 3 73433105 73433105 G A PDZRN3 Missense_Mutation p.A871V 0.26 tolerated(0.06) probably_damaging(0.95) TCGA-58-8391-01 4 103822436 103822436 C A SLC9B1 Missense_Mutation p.L462F 0.08 tolerated(0.06) benign(0.302) TCGA-58-8391-01 4 10515205 10515205 C T CLNK Missense_Mutation p.M263I 0.38 tolerated(0.26) benign(0.008) TCGA-58-8391-01 4 106345400 106345400 T C PPA2 Missense_Mutation p.K203R 0.18 deleterious(0) probably_damaging(1) TCGA-58-8391-01 4 122853674 122853674 C T TRPC3 Missense_Mutation p.E247K 0.55 deleterious(0) probably_damaging(0.962) TCGA-58-8391-01 4 126412134 126412134 G A FAT4 Silent p.R4719R 0.57 TCGA-58-8391-01 4 13600849 13600849 A T BOD1L1 Missense_Mutation p.S2559T 0.15 benign(0.002) TCGA-58-8391-01 4 13601780 13601780 T A BOD1L1 Missense_Mutation p.E2248D 0.40 probably_damaging(0.913) TCGA-58-8391-01 4 153802136 153802136 G T ARFIP1 Nonsense_Mutation p.E145* 0.55 TCGA-58-8391-01 4 160264179 160264179 A G RAPGEF2 Silent p.K828K 0.55 TCGA-58-8391-01 4 189061725 189061725 A T TRIML1 Missense_Mutation p.K151M 0.47 deleterious(0.01) possibly_damaging(0.907) TCGA-58-8391-01 4 36069742 36069742 G A ARAP2 Silent p.N1634N 0.40 TCGA-58-8391-01 4 55976699 55976699 T A KDR Missense_Mutation p.T376S 0.38 tolerated(1) possibly_damaging(0.626) TCGA-58-8391-01 4 57179503 57179503 A T KIAA1211 Silent p.P165P 0.37 TCGA-58-8391-01 4 57179504 57179504 A T KIAA1211 Nonsense_Mutation p.K166* 0.37 TCGA-58-8391-01 4 70146244 70146244 T C UGT2B28 Missense_Mutation p.L9P 0.21 deleterious(0) possibly_damaging(0.886) TCGA-58-8391-01 4 73185183 73185183 C T ADAMTS3 Missense_Mutation p.M406I 0.25 deleterious(0.01) probably_damaging(0.934) TCGA-58-8391-01 4 85728 85728 A T Z95704.2 RNA 0.47 TCGA-58-8391-01 4 87656878 87656878 G A PTPN13 Silent p.E761E 0.21 TCGA-58-8391-01 5 112177830 112177830 A G APC Missense_Mutation p.K2180R 0.62 probably_damaging(0.995) TCGA-58-8391-01 5 121187889 121187889 G T FTMT Missense_Mutation p.E77D 0.67 deleterious(0.01) possibly_damaging(0.655) TCGA-58-8391-01 5 137426996 137426996 C T WNT8A 3'UTR 0.42 TCGA-58-8391-01 5 13913875 13913875 C G DNAH5 Missense_Mutation p.E505Q 0.23 possibly_damaging(0.728) TCGA-58-8391-01 5 140175852 140175852 C T PCDHA2 Silent p.L435L 0.58 TCGA-58-8391-01 5 140579989 140579989 T C PCDHB11 Silent p.A214A 0.65 TCGA-58-8391-01 5 1589445 1589445 C A SDHAP3 RNA 0.49 TCGA-58-8391-01 5 1602813 1602813 C A CTD-2012J19.3 Intron 0.29 TCGA-58-8391-01 5 175722049 175722049 T C SIMC1 Missense_Mutation p.L49S 0.06 tolerated(0.5) benign(0.005) TCGA-58-8391-01 5 178700048 178700048 C T ADAMTS2 Missense_Mutation p.M184I 0.32 deleterious(0.01) benign(0.005) TCGA-58-8391-01 5 35957485 35957485 C G UGT3A1 Missense_Mutation p.G294R 0.19 deleterious(0) probably_damaging(0.999) TCGA-58-8391-01 5 38490352 38490352 C G LIFR Missense_Mutation p.G703R 0.36 deleterious(0) probably_damaging(0.95) TCGA-58-8391-01 5 70247774 70247774 A T SMN1 Nonsense_Mutation p.R281* 0.37 TCGA-58-8391-01 5 70818775 70818775 A T BDP1 Missense_Mutation p.S1796C 0.32 deleterious(0) probably_damaging(0.998) TCGA-58-8391-01 5 76254742 76254742 T C CRHBP Intron 0.64 TCGA-58-8391-01 5 79733774 79733774 G A ZFYVE16 Missense_Mutation p.G424S 0.67 tolerated(0.39) benign(0.012) TCGA-58-8391-01 5 79734234 79734234 T C ZFYVE16 Missense_Mutation p.I577T 0.76 tolerated(0.55) benign(0.002) TCGA-58-8391-01 6 110301416 110301416 C A GPR6 3'UTR 0.45 TCGA-58-8391-01 6 112402361 112402361 C A TUBE1 Missense_Mutation p.G87V 0.20 deleterious(0) probably_damaging(0.987) TCGA-58-8391-01 6 112499350 112499350 C A LAMA4 Missense_Mutation p.A388S 0.17 tolerated(0.17) benign(0.217) TCGA-58-8391-01 6 112671391 112671391 G C RFPL4B Missense_Mutation p.G161R 0.14 deleterious(0) probably_damaging(0.987) TCGA-58-8391-01 6 117244292 117244292 C A RFX6 Nonsense_Mutation p.S487* 0.18 TCGA-58-8391-01 6 132181625 132181625 T A ENPP1 Silent p.P298P 0.26 TCGA-58-8391-01 6 146480510 146480510 G T GRM1 Missense_Mutation p.A243S 0.19 tolerated(0.05) possibly_damaging(0.577) TCGA-58-8391-01 6 147124510 147124510 C A ADGB Intron 0.50 TCGA-58-8391-01 6 152639296 152639296 C A SYNE1 Missense_Mutation p.A5498S 0.20 benign(0.006) TCGA-58-8391-01 6 160769509 160769509 C T SLC22A3 Missense_Mutation p.R20C 0.08 deleterious(0) possibly_damaging(0.869) TCGA-58-8391-01 6 16130835 16130836 - T MYLIP Frame_Shift_Ins p.T47Yfs*3 0.40 TCGA-58-8391-01 6 162683770 162683770 C A PARK2 Missense_Mutation p.V67F 0.28 deleterious(0) possibly_damaging(0.905) TCGA-58-8391-01 6 163876364 163876364 G T QKI Nonsense_Mutation p.E66* 0.23 TCGA-58-8391-01 6 167729051 167729051 G T UNC93A 3'UTR 0.15 TCGA-58-8391-01 6 17292350 17292350 G T RBM24 Nonstop_Mutation p.*237Yext*42 0.69 TCGA-58-8391-01 6 29141599 29141599 T C OR2J2 Missense_Mutation p.F63L 0.47 deleterious(0) probably_damaging(0.919) TCGA-58-8391-01 6 52285171 52285171 G A EFHC1 5'UTR 0.62 TCGA-58-8391-01 6 66115232 66115232 A T EYS Silent p.P297P 0.20 TCGA-58-8391-01 6 82925968 82925968 C T IBTK Splice_Site p.X476_splice 0.43 TCGA-58-8391-01 6 83847627 83847627 A C DOPEY1 Missense_Mutation p.E1289A 0.43 tolerated(0.24) possibly_damaging(0.601) TCGA-58-8391-01 6 84303344 84303344 G T SNAP91 Missense_Mutation p.P517T 0.29 tolerated(0.28) possibly_damaging(0.641) TCGA-58-8391-01 6 89926936 89926936 T A GABRR1 Missense_Mutation p.M36L 0.51 tolerated_low_confidence(0.3) benign(0) TCGA-58-8391-01 6 97051568 97051568 C A FHL5 Missense_Mutation p.P27T 0.48 deleterious(0.02) benign(0.11) TCGA-58-8391-01 7 112112863 112112863 G T IFRD1 Missense_Mutation p.V405L 0.33 tolerated(1) benign(0.01) TCGA-58-8391-01 7 129049353 129049353 C T AHCYL2 Silent p.V444V 0.18 TCGA-58-8391-01 7 129939244 129939244 G A CPA4 Silent p.Q95Q 0.18 TCGA-58-8391-01 7 138145639 138145639 T A TRIM24 Missense_Mutation p.S116T 0.33 tolerated(0.59) benign(0) TCGA-58-8391-01 7 138441201 138441201 A T ATP6V0A4 Splice_Site p.X241_splice 0.22 TCGA-58-8391-01 7 142428983 142428983 T C TRBV28 Silent p.%3D 0.41 TCGA-58-8391-01 7 142961726 142961726 C T GSTK1 Silent p.P80P 0.38 TCGA-58-8391-01 7 143806980 143806980 T C OR2A2 Missense_Mutation p.L102S 0.45 deleterious(0.01) benign(0.223) TCGA-58-8391-01 7 149430512 149430512 C T KRBA1 Silent p.G822G 0.30 TCGA-58-8391-01 7 149513002 149513002 A T SSPO RNA 0.36 TCGA-58-8391-01 7 149516503 149516503 G A SSPO RNA 0.22 TCGA-58-8391-01 7 151927108 151927108 A C KMT2C Missense_Mutation p.M959R 0.07 probably_damaging(0.979) TCGA-58-8391-01 7 21470176 21470176 G A SP4 Missense_Mutation p.G465R 0.31 deleterious(0) probably_damaging(0.999) TCGA-58-8391-01 7 2284216 2284216 G A NUDT1 Missense_Mutation p.A26T 0.11 tolerated(1) benign(0.002) TCGA-58-8391-01 7 23240281 23240281 G T NUPL2 Nonsense_Mutation p.E397* 0.36 TCGA-58-8391-01 7 31617860 31617860 C G CCDC129 Missense_Mutation p.P354A 0.30 tolerated(0.24) benign(0.126) TCGA-58-8391-01 7 31890255 31890255 C A PDE1C Missense_Mutation p.R344L 0.37 deleterious(0.01) probably_damaging(0.996) TCGA-58-8391-01 7 38424415 38424415 T A AMPH 3'UTR 0.28 TCGA-58-8391-01 7 38424477 38424477 C A AMPH Missense_Mutation p.R677I 0.39 deleterious(0) possibly_damaging(0.882) TCGA-58-8391-01 7 45216933 45216933 C G RAMP3 Missense_Mutation p.C28W 0.29 deleterious(0) unknown(0) TCGA-58-8391-01 7 57522291 57522291 G T ZNF716 Silent p.L55L 0.21 TCGA-58-8391-01 7 64863793 64863793 C A ZNF92 Missense_Mutation p.P256T 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-58-8391-01 7 72657267 72657267 C A GTF2IRD2P1 RNA 0.23 TCGA-58-8391-01 7 72657268 72657268 C A GTF2IRD2P1 RNA 0.23 TCGA-58-8391-01 7 88966058 88966059 - A ZNF804B Frame_Shift_Ins p.I1255Nfs*76 0.38 TCGA-58-8391-01 7 93072968 93072968 C A CALCR Silent p.V284V 0.44 TCGA-58-8391-01 7 938868 938868 C T ADAP1 Missense_Mutation p.G300S 0.43 deleterious(0) probably_damaging(1) TCGA-58-8391-01 7 94913468 94913468 G A PPP1R9A Silent p.A1145A 0.50 TCGA-58-8391-01 7 95222203 95222203 G T PDK4 Missense_Mutation p.T133K 0.29 deleterious(0.04) benign(0.168) TCGA-58-8391-01 7 98609871 98609871 C T TRRAP Missense_Mutation p.L3825F 0.63 probably_damaging(0.969) TCGA-58-8391-01 8 108972964 108972964 C T RSPO2 Missense_Mutation p.G122D 0.42 deleterious(0) probably_damaging(1) TCGA-58-8391-01 8 118543009 118543009 G T MED30 Silent p.R128R 0.42 TCGA-58-8391-01 8 139209874 139209874 G T FAM135B Missense_Mutation p.H236Q 0.20 tolerated(0.05) benign(0.064) TCGA-58-8391-01 8 143999111 143999111 C T CYP11B2 Nonsense_Mutation p.W49* 0.12 TCGA-58-8391-01 8 143999163 143999163 G T CYP11B2 Missense_Mutation p.P32T 0.14 tolerated(0.07) benign(0.434) TCGA-58-8391-01 8 144997149 144997149 C T PLEC Missense_Mutation p.M2453I 0.19 benign(0.074) TCGA-58-8391-01 8 16012636 16012636 C G MSR1 Missense_Mutation p.G279R 0.38 deleterious(0) probably_damaging(1) TCGA-58-8391-01 8 22275187 22275187 G C SLC39A14 Missense_Mutation p.A391P 0.29 deleterious(0) probably_damaging(0.991) TCGA-58-8391-01 8 22873206 22873208 ACA - RHOBTB2 In_Frame_Del p.N663del 0.41 TCGA-58-8391-01 8 24350612 24350612 G T ADAM7 Missense_Mutation p.G571V 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-58-8391-01 8 26218626 26218626 G A PPP2R2A Missense_Mutation p.R209Q 0.40 deleterious(0) probably_damaging(1) TCGA-58-8391-01 8 2808722 2808722 G A CSMD1 Missense_Mutation p.T3372I 0.51 possibly_damaging(0.809) TCGA-58-8391-01 8 3245154 3245154 C A CSMD1 Missense_Mutation p.G882C 0.53 probably_damaging(0.999) TCGA-58-8391-01 8 33454885 33454885 C T DUSP26 Missense_Mutation p.R50Q 0.34 tolerated(0.41) possibly_damaging(0.505) TCGA-58-8391-01 8 42978121 42978122 - T POMK 3'UTR 0.35 TCGA-58-8391-01 8 43047547 43047547 C G HGSNAT Missense_Mutation p.H451D 0.24 deleterious(0) probably_damaging(0.995) TCGA-58-8391-01 8 53853367 53853367 C T NPBWR1 Silent p.S300S 0.27 TCGA-58-8391-01 8 61749494 61749494 G C CHD7 Missense_Mutation p.G1370R 0.23 probably_damaging(1) TCGA-58-8391-01 8 67064845 67064845 G C TRIM55 Missense_Mutation p.D407H 0.28 tolerated_low_confidence(0.16) possibly_damaging(0.503) TCGA-58-8391-01 8 89086854 89086854 C A MMP16 Missense_Mutation p.G401W 0.41 deleterious(0) probably_damaging(1) TCGA-58-8391-01 9 100373864 100373864 C A TSTD2 Missense_Mutation p.D241Y 0.28 deleterious(0) probably_damaging(0.988) TCGA-58-8391-01 9 101787238 101787238 G T COL15A1 Missense_Mutation p.G646V 0.34 deleterious(0) probably_damaging(0.999) TCGA-58-8391-01 9 107289027 107289027 T C OR13C4 Missense_Mutation p.N155S 0.48 tolerated(0.09) benign(0.277) TCGA-58-8391-01 9 121976352 121976352 C T BRINP1 Missense_Mutation p.G256E 0.27 deleterious(0.02) benign(0.18) TCGA-58-8391-01 9 125617668 125617668 G C RC3H2 Missense_Mutation p.D870E 0.26 tolerated(0.6) probably_damaging(0.97) TCGA-58-8391-01 9 125621366 125621366 G C RC3H2 Missense_Mutation p.P622R 0.50 deleterious(0.01) probably_damaging(0.994) TCGA-58-8391-01 9 135447838 135447838 C A C9orf171 Silent p.R302R 0.42 TCGA-58-8391-01 9 135704036 135704036 G C AK8 Missense_Mutation p.H160Q 0.26 deleterious(0.01) probably_damaging(1) TCGA-58-8391-01 9 137704327 137704327 G A COL5A1 Silent p.E1241E 0.24 TCGA-58-8391-01 9 140242574 140242574 A T EXD3 Silent p.G649G 0.53 TCGA-58-8391-01 9 5185499 5185499 C G INSL6 Missense_Mutation p.R35T 0.75 deleterious(0.03) possibly_damaging(0.849) TCGA-58-8391-01 9 74489888 74489888 G T ABHD17B Missense_Mutation p.L37M 0.50 tolerated(0.05) benign(0.03) TCGA-58-8391-01 9 79318648 79318648 A T PRUNE2 Silent p.P2627P 0.40 TCGA-58-8391-01 9 82323121 82323121 G T TLE4 Missense_Mutation p.G342V 0.28 tolerated(0.1) benign(0.394) TCGA-58-8391-01 9 84532732 84532732 A G SPATA31D5P RNA 0.32 TCGA-58-8391-01 9 86920207 86920207 G A SLC28A3 Missense_Mutation p.T99I 0.41 tolerated(0.17) benign(0.009) TCGA-58-8391-01 9 88270091 88270091 G T AGTPBP1 Missense_Mutation p.P312T 0.14 tolerated(0.11) probably_damaging(0.991) TCGA-58-8391-01 9 90503730 90503730 T A SPATA31E1 Missense_Mutation p.L1443H 0.47 deleterious_low_confidence(0) possibly_damaging(0.701) TCGA-58-8391-01 9 97369220 97369220 G T FBP1 Missense_Mutation p.F194L 0.12 deleterious(0) probably_damaging(0.999) TCGA-58-8391-01 9 97845087 97845087 A T C9orf3 Intron 0.47 TCGA-58-8391-01 X 107920737 107920737 A G COL4A5 Silent p.P1272P 0.72 TCGA-58-8391-01 X 119211114 119211114 G T RHOXF2B Silent p.G73G 0.59 TCGA-58-8391-01 X 123785859 123785859 C T TENM1 Missense_Mutation p.G495D 0.74 deleterious(0.01) benign(0.23) TCGA-58-8391-01 X 129318355 129318355 G A RAB33A Missense_Mutation p.V119I 0.04 tolerated(0.18) probably_damaging(0.989) TCGA-58-8391-01 X 132160539 132160539 G T USP26 Missense_Mutation p.F570L 0.71 tolerated(1) benign(0.012) TCGA-58-8391-01 X 151819031 151819031 A G GABRQ Missense_Mutation p.R297G 0.59 deleterious(0) probably_damaging(1) TCGA-58-8391-01 X 23019169 23019169 G T DDX53 Missense_Mutation p.G332V 0.58 deleterious(0) probably_damaging(0.999) TCGA-58-8391-01 X 31697641 31697641 A G DMD Silent p.L2575L 0.67 TCGA-58-8391-01 X 50146180 50146180 T A DGKK Intron 0.73 TCGA-58-8391-01 X 71493184 71493184 G T RPS4X Silent p.T196T 0.71 TCGA-58-8391-01 X 73045093 73045093 G A XIST RNA 0.54 TCGA-58-8391-01 X 89177485 89177485 A C TGIF2LX Missense_Mutation p.H134P 0.71 deleterious(0.05) possibly_damaging(0.58) TCGA-58-8391-01 X 96139331 96139331 A T RPA4 Missense_Mutation p.S8C 0.71 deleterious(0) possibly_damaging(0.808) TCGA-58-8393-01 10 104233331 104233331 C T TMEM180 Silent p.L310L 0.12 TCGA-58-8393-01 10 104233344 104233344 C T TMEM180 Missense_Mutation p.P315S 0.11 deleterious(0) probably_damaging(1) TCGA-58-8393-01 10 104233345 104233345 C A TMEM180 Missense_Mutation p.P315H 0.11 deleterious(0) probably_damaging(1) TCGA-58-8393-01 10 104235576 104235576 C T TMEM180 Silent p.L463L 0.11 TCGA-58-8393-01 10 115348755 115348755 C G NRAP Missense_Mutation p.K1724N 0.17 deleterious_low_confidence(0) benign(0.045) TCGA-58-8393-01 10 11985146 11985146 C T UPF2 Missense_Mutation p.D1066N 0.11 tolerated(0.23) benign(0.239) TCGA-58-8393-01 10 135215657 135215657 C G MTG1 Missense_Mutation p.S193C 0.19 tolerated(1) benign(0.006) TCGA-58-8393-01 10 14950678 14950678 G C DCLRE1C Missense_Mutation p.S603C 0.16 tolerated_low_confidence(0.51) benign(0.003) TCGA-58-8393-01 10 24908837 24908837 G A ARHGAP21 Nonsense_Mutation p.Q663* 0.09 TCGA-58-8393-01 10 52580374 52580374 C G A1CF Missense_Mutation p.A277P 0.08 deleterious(0) probably_damaging(0.936) TCGA-58-8393-01 10 55892758 55892758 G A PCDH15 Silent p.I598I 0.16 TCGA-58-8393-01 10 70451437 70451437 G C TET1 Missense_Mutation p.E2093Q 0.06 deleterious(0.02) possibly_damaging(0.556) TCGA-58-8393-01 10 72289689 72289689 G T PALD1 Silent p.V111V 0.15 TCGA-58-8393-01 10 7247795 7247795 C G SFMBT2 Missense_Mutation p.A476P 0.19 tolerated(1) benign(0.003) TCGA-58-8393-01 10 81316929 81316929 G A SFTPA2 3'UTR 0.12 TCGA-58-8393-01 10 81701777 81701777 G A SFTPD Silent p.L161L 0.14 TCGA-58-8393-01 10 99215490 99215490 G A ZDHHC16 Missense_Mutation p.E300K 0.15 deleterious(0) probably_damaging(0.968) TCGA-58-8393-01 11 125324071 125324071 C G FEZ1 Missense_Mutation p.Q325H 0.30 tolerated(0.27) benign(0.007) TCGA-58-8393-01 11 45117445 45117445 G C PRDM11 Missense_Mutation p.R30T 0.10 deleterious_low_confidence(0.01) benign(0.053) TCGA-58-8393-01 11 47510482 47510482 C G CELF1 Missense_Mutation p.E56Q 0.04 deleterious(0) possibly_damaging(0.641) TCGA-58-8393-01 11 56185267 56185267 G A OR5R1 Missense_Mutation p.P148S 0.12 tolerated(0.15) probably_damaging(0.968) TCGA-58-8393-01 11 5625817 5625817 G C TRIM6 Missense_Mutation p.E187D 0.28 tolerated(0.11) possibly_damaging(0.875) TCGA-58-8393-01 11 6244876 6244876 C A FAM160A2 Silent p.V247V 0.09 TCGA-58-8393-01 11 62568822 62568822 G A NXF1 Silent p.I259I 0.09 TCGA-58-8393-01 11 64526089 64526089 C T PYGM Missense_Mutation p.E111K 0.12 tolerated(0.14) benign(0.29) TCGA-58-8393-01 11 65265348 65265348 C G MALAT1 RNA 0.11 TCGA-58-8393-01 11 65812940 65812940 C T GAL3ST3 5'UTR 0.22 TCGA-58-8393-01 11 7509618 7509618 G C OLFML1 Missense_Mutation p.E130D 0.18 tolerated(0.29) benign(0.004) TCGA-58-8393-01 11 77301394 77301394 G A AQP11 Silent p.V119V 0.11 TCGA-58-8393-01 12 101603539 101603539 T C SLC5A8 Missense_Mutation p.I30V 0.05 tolerated(1) benign(0.002) TCGA-58-8393-01 12 109288126 109288126 C T DAO Missense_Mutation p.R199W 0.20 deleterious(0) probably_damaging(1) TCGA-58-8393-01 12 119617367 119617367 G A HSPB8 Missense_Mutation p.E84K 0.21 tolerated(0.84) benign(0.021) TCGA-58-8393-01 12 12356158 12356158 G C LRP6 Nonsense_Mutation p.S209* 0.06 TCGA-58-8393-01 12 124857112 124857112 G C NCOR2 Missense_Mutation p.H755D 0.08 unknown(0) TCGA-58-8393-01 12 12653452 12653452 C - DUSP16 Splice_Site p.X177_splice 0.21 TCGA-58-8393-01 12 129293415 129293415 C T SLC15A4 Silent p.L392L 0.12 TCGA-58-8393-01 12 1755118 1755118 G A WNT5B Silent p.K260K 0.13 TCGA-58-8393-01 12 1988119 1988119 C T CACNA2D4 Intron 0.23 TCGA-58-8393-01 12 24970976 24970976 C G BCAT1 Missense_Mutation p.R388T 0.09 tolerated(0.16) benign(0.188) TCGA-58-8393-01 12 54756722 54756722 C T GPR84 Missense_Mutation p.R305K 0.28 tolerated(0.75) benign(0.016) TCGA-58-8393-01 12 56295455 56295455 G A WIBG 3'UTR 0.20 TCGA-58-8393-01 12 57422521 57422521 C G MYO1A 3'UTR 0.14 TCGA-58-8393-01 12 57864774 57864774 C G GLI1 Missense_Mutation p.L751V 0.15 tolerated(0.06) benign(0.004) TCGA-58-8393-01 12 57865236 57865236 C G GLI1 Missense_Mutation p.Q905E 0.25 deleterious(0) probably_damaging(0.974) TCGA-58-8393-01 12 58024766 58024766 G A B4GALNT1 Missense_Mutation p.P163S 0.22 deleterious(0) benign(0.382) TCGA-58-8393-01 12 58025099 58025099 G T B4GALNT1 Silent p.L89L 0.24 TCGA-58-8393-01 12 72338392 72338392 C T TPH2 Missense_Mutation p.R156W 0.19 deleterious(0) probably_damaging(0.996) TCGA-58-8393-01 12 7802063 7802063 C G APOBEC1 3'UTR 0.18 TCGA-58-8393-01 12 81536904 81536904 C G ACSS3 Missense_Mutation p.P267A 0.29 tolerated(0.29) benign(0.006) TCGA-58-8393-01 13 41767184 41767184 C G KBTBD7 Missense_Mutation p.D404H 0.14 tolerated(0.39) benign(0.008) TCGA-58-8393-01 13 61985792 61985792 C T PCDH20 Missense_Mutation p.D814N 0.10 tolerated(0.12) benign(0.02) TCGA-58-8393-01 13 67802164 67802164 C T PCDH9 Missense_Mutation p.D137N 0.06 deleterious(0) probably_damaging(0.994) TCGA-58-8393-01 13 72133951 72133951 C T DACH1 Splice_Site p.X481_splice 0.11 TCGA-58-8393-01 13 73482816 73482816 G A PIBF1 Missense_Mutation p.E546K 0.31 deleterious(0) probably_damaging(0.991) TCGA-58-8393-01 14 20864829 20864829 C A TEP1 Missense_Mutation p.G537V 0.12 deleterious(0) probably_damaging(0.965) TCGA-58-8393-01 14 24588765 24588765 C G DCAF11 Intron 0.11 TCGA-58-8393-01 14 24845666 24845666 C T NFATC4 Silent p.F804F 0.08 TCGA-58-8393-01 14 34263107 34263107 G A NPAS3 Silent p.L386L 0.07 TCGA-58-8393-01 14 38678969 38678969 C T SSTR1 Silent p.F125F 0.28 TCGA-58-8393-01 14 50101082 50101082 G C DNAAF2 Missense_Mutation p.H262Q 0.13 deleterious(0.01) probably_damaging(0.942) TCGA-58-8393-01 14 62463200 62463200 C G SYT16 Missense_Mutation p.Q155E 0.14 tolerated(0.13) possibly_damaging(0.633) TCGA-58-8393-01 14 71374708 71374708 C T PCNX Silent p.F47F 0.19 TCGA-58-8393-01 14 74427938 74427938 C T COQ6 Silent p.V318V 0.20 TCGA-58-8393-01 14 77951044 77951044 C G ISM2 Missense_Mutation p.L120F 0.09 deleterious(0.03) probably_damaging(0.969) TCGA-58-8393-01 14 78390804 78390804 C T ADCK1 Missense_Mutation p.S288L 0.12 deleterious(0.01) possibly_damaging(0.71) TCGA-58-8393-01 14 93179185 93179185 C A LGMN Missense_Mutation p.G192V 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-58-8393-01 14 93649582 93649582 C T MOAP1 Missense_Mutation p.E336K 0.09 deleterious(0) possibly_damaging(0.801) TCGA-58-8393-01 15 22368853 22368853 C T OR4M2 Missense_Mutation p.S93F 0.05 deleterious(0) probably_damaging(0.999) TCGA-58-8393-01 15 34647309 34647309 G C NUTM1 Missense_Mutation p.E456Q 0.09 tolerated(0.08) probably_damaging(0.913) TCGA-58-8393-01 15 40585903 40585903 G A PLCB2 Missense_Mutation p.S695L 0.27 deleterious(0) probably_damaging(0.981) TCGA-58-8393-01 15 40586524 40586524 G C PLCB2 Missense_Mutation p.F668L 0.15 deleterious(0.03) possibly_damaging(0.757) TCGA-58-8393-01 15 40902484 40902484 C G CASC5 Nonsense_Mutation p.S80* 0.18 TCGA-58-8393-01 15 45059866 45059866 A G TRIM69 Missense_Mutation p.T467A 0.12 deleterious(0) probably_damaging(0.996) TCGA-58-8393-01 15 48513143 48513143 G A SLC12A1 Missense_Mutation p.G193E 0.27 deleterious(0) probably_damaging(1) TCGA-58-8393-01 15 50515239 50515239 C T SLC27A2 Silent p.V350V 0.16 TCGA-58-8393-01 15 52186085 52186085 G A TMOD3 Silent p.L190L 0.15 TCGA-58-8393-01 15 52186090 52186090 G A TMOD3 Missense_Mutation p.R192K 0.14 tolerated(0.2) benign(0.019) TCGA-58-8393-01 15 52186130 52186130 G C TMOD3 Missense_Mutation p.L205F 0.13 deleterious(0.01) probably_damaging(0.927) TCGA-58-8393-01 15 56385998 56385998 C G RFX7 Missense_Mutation p.E1310Q 0.24 deleterious_low_confidence(0) possibly_damaging(0.72) TCGA-58-8393-01 15 59497652 59497652 C A MYO1E Missense_Mutation p.R521S 0.24 tolerated(0.06) probably_damaging(0.999) TCGA-58-8393-01 15 59971820 59971820 G A BNIP2 Missense_Mutation p.S210L 0.15 deleterious(0.02) benign(0.065) TCGA-58-8393-01 15 78923431 78923431 C T CHRNB4 Missense_Mutation p.V116M 0.23 deleterious(0) probably_damaging(1) TCGA-58-8393-01 15 90904131 90904131 C G ZNF774 Missense_Mutation p.F356L 0.05 deleterious(0.02) probably_damaging(0.993) TCGA-58-8393-01 15 91430425 91430425 C T FES Missense_Mutation p.R165C 0.19 deleterious(0.03) possibly_damaging(0.677) TCGA-58-8393-01 15 98512534 98512534 G A ARRDC4 Silent p.G269G 0.05 TCGA-58-8393-01 16 14024602 14024602 G C ERCC4 Missense_Mutation p.Q276H 0.08 deleterious(0) probably_damaging(0.99) TCGA-58-8393-01 16 27448954 27448954 G A IL21R Missense_Mutation p.D100N 0.11 tolerated(0.12) benign(0.047) TCGA-58-8393-01 16 30078832 30078832 C T ALDOA Silent p.F112F 0.22 TCGA-58-8393-01 16 31098135 31098136 CA - RP11-196G11.1 3'Flank 0.08 TCGA-58-8393-01 16 51173693 51173693 C G SALL1 Missense_Mutation p.D814H 0.04 deleterious(0.03) probably_damaging(0.966) TCGA-58-8393-01 16 58030955 58030955 C G ZNF319 Missense_Mutation p.Q405H 0.13 tolerated(0.09) benign(0.058) TCGA-58-8393-01 16 58571095 58571095 G A CNOT1 Missense_Mutation p.S1815F 0.18 deleterious(0.04) benign(0.017) TCGA-58-8393-01 16 67763188 67763188 C T RANBP10 Silent p.E449E 0.15 TCGA-58-8393-01 16 67763232 67763232 C T RANBP10 Missense_Mutation p.D435N 0.23 tolerated(1) probably_damaging(0.946) TCGA-58-8393-01 16 77328998 77328998 C T ADAMTS18 Missense_Mutation p.C943Y 0.07 deleterious(0) probably_damaging(1) TCGA-58-8393-01 17 15539539 15539539 C A TRIM16 Silent p.G220G 0.30 TCGA-58-8393-01 17 37566539 37566539 G A MED1 Silent p.L645L 0.09 TCGA-58-8393-01 17 39670398 39670398 G C KRT15 Intron 0.14 TCGA-58-8393-01 17 40705595 40705595 C G HSD17B1 Missense_Mutation p.S135W 0.25 tolerated(0.05) benign(0.234) TCGA-58-8393-01 17 40950639 40950639 G C COA3 Missense_Mutation p.Q21E 0.27 tolerated(0.22) possibly_damaging(0.728) TCGA-58-8393-01 17 45735933 45735933 G A KPNB1 Missense_Mutation p.M181I 0.25 deleterious(0.02) probably_damaging(0.94) TCGA-58-8393-01 17 47243560 47243560 G T B4GALNT2 Nonsense_Mutation p.E407* 0.24 TCGA-58-8393-01 17 56651552 56651552 C G TEX14 Missense_Mutation p.D1173H 0.17 deleterious(0) probably_damaging(0.966) TCGA-58-8393-01 17 63223473 63223473 C T RGS9 Missense_Mutation p.S658L 0.32 tolerated_low_confidence(0.31) benign(0.008) TCGA-58-8393-01 17 66979869 66979869 G A ABCA9 Nonsense_Mutation p.Q1541* 0.18 TCGA-58-8393-01 17 71202876 71202876 G A COG1 Silent p.E883E 0.23 TCGA-58-8393-01 17 7186570 7186570 G A SLC2A4 Missense_Mutation p.E14K 0.31 tolerated(0.22) benign(0.002) TCGA-58-8393-01 17 7577102 7577102 C T TP53 Missense_Mutation p.G279E 0.41 deleterious(0) probably_damaging(0.999) TCGA-58-8393-01 17 76116888 76116888 G A TMC6 Silent p.L521L 0.39 TCGA-58-8393-01 17 76116960 76116960 G A TMC6 Intron 0.36 TCGA-58-8393-01 17 80401933 80401933 C G C17orf62 Missense_Mutation p.E171Q 0.06 tolerated(0.26) possibly_damaging(0.635) TCGA-58-8393-01 18 11999074 11999074 G A IMPA2 Missense_Mutation p.E40K 0.04 tolerated(0.64) possibly_damaging(0.681) TCGA-58-8393-01 18 56033417 56033417 G C NEDD4L Missense_Mutation p.E674Q 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-58-8393-01 18 64172355 64172355 C T CDH19 Silent p.R671R 0.13 TCGA-58-8393-01 18 8784413 8784413 G A SOGA2 Missense_Mutation p.E435K 0.13 tolerated(0.06) probably_damaging(0.937) TCGA-58-8393-01 19 1251880 1251880 G C MIDN Missense_Mutation p.E122Q 0.11 deleterious(0) possibly_damaging(0.875) TCGA-58-8393-01 19 17337600 17337600 G A OCEL1 Silent p.P56P 0.21 TCGA-58-8393-01 19 17379599 17379599 C G BABAM1 5'UTR 0.21 TCGA-58-8393-01 19 1789069 1789069 G C ATP8B3 Missense_Mutation p.Q966E 0.20 tolerated(0.07) benign(0.099) TCGA-58-8393-01 19 1791816 1791816 G A ATP8B3 Silent p.V745V 0.09 TCGA-58-8393-01 19 18710463 18710463 G C CRLF1 Silent p.L103L 0.29 TCGA-58-8393-01 19 19260155 19260155 G C MEF2B Missense_Mutation p.I46M 0.05 deleterious(0) probably_damaging(0.998) TCGA-58-8393-01 19 24309248 24309248 C A ZNF254 Missense_Mutation p.A149D 0.09 deleterious(0.01) benign(0.004) TCGA-58-8393-01 19 2431578 2431578 C T LMNB2 Missense_Mutation p.E597K 0.13 tolerated(0.2) possibly_damaging(0.563) TCGA-58-8393-01 19 3576602 3576602 G C HMG20B Missense_Mutation p.E191Q 0.15 deleterious(0.03) probably_damaging(0.997) TCGA-58-8393-01 19 36128450 36128450 G C RBM42 Silent p.L479L 0.29 TCGA-58-8393-01 19 37582018 37582018 C T ZNF420 Missense_Mutation p.S44L 0.08 deleterious(0.02) possibly_damaging(0.637) TCGA-58-8393-01 19 41627502 41627502 C G CYP2F1 Missense_Mutation p.I208M 0.15 tolerated(0.18) possibly_damaging(0.751) TCGA-58-8393-01 19 41787140 41787140 G A HNRNPUL1 Missense_Mutation p.G320E 0.30 deleterious(0) unknown(0) TCGA-58-8393-01 19 42814795 42814795 G A PRR19 Nonsense_Mutation p.W325* 0.16 TCGA-58-8393-01 19 43579605 43579605 G T PSG2 Missense_Mutation p.L204I 0.17 tolerated(0.2) benign(0.029) TCGA-58-8393-01 19 44097114 44097114 G T IRGQ Missense_Mutation p.D312E 0.16 tolerated(0.35) possibly_damaging(0.742) TCGA-58-8393-01 19 44981629 44981629 G A ZNF180 Nonsense_Mutation p.Q357* 0.28 TCGA-58-8393-01 19 46443364 46443364 C T NOVA2 Silent p.A412A 0.20 TCGA-58-8393-01 19 47875997 47875997 G A DHX34 Silent p.L593L 0.14 TCGA-58-8393-01 19 52448241 52448241 G T ZNF613 Nonsense_Mutation p.E369* 0.16 TCGA-58-8393-01 19 56373409 56373409 C G NLRP4 Silent p.L690L 0.09 TCGA-58-8393-01 19 57956005 57956005 C A ZNF749 Missense_Mutation p.H497N 0.23 tolerated(0.52) benign(0.004) TCGA-58-8393-01 19 58058405 58058405 C T ZNF550 Missense_Mutation p.E362K 0.20 deleterious(0) benign(0.037) TCGA-58-8393-01 19 58698326 58698326 C G ZNF274 Missense_Mutation p.S58C 0.09 deleterious(0) probably_damaging(0.996) TCGA-58-8393-01 19 58772931 58772931 G A ZNF544 Missense_Mutation p.G320D 0.16 tolerated(1) benign(0) TCGA-58-8393-01 19 59010926 59010926 C A SLC27A5 Missense_Mutation p.G534W 0.21 deleterious(0) probably_damaging(1) TCGA-58-8393-01 19 7673099 7673099 G A CAMSAP3 Missense_Mutation p.A264T 0.21 deleterious(0) possibly_damaging(0.699) TCGA-58-8393-01 19 875359 875359 G A MED16 Silent p.F552F 0.08 TCGA-58-8393-01 1 145578079 145578079 C T PIAS3 Silent p.F14F 0.17 TCGA-58-8393-01 1 149783666 149783666 G C HIST2H2BF Missense_Mutation p.F71L 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.614) TCGA-58-8393-01 1 151751347 151751347 C T TDRKH Missense_Mutation p.E233K 0.07 tolerated(0.14) benign(0.008) TCGA-58-8393-01 1 152185905 152185905 C G HRNR Missense_Mutation p.D2734H 0.11 unknown(0) TCGA-58-8393-01 1 154562360 154562360 C G ADAR Silent p.L847L 0.09 TCGA-58-8393-01 1 157103923 157103923 G A ETV3 Silent p.F127F 0.28 TCGA-58-8393-01 1 1571784 1571784 C G CDK11B Missense_Mutation p.K662N 0.36 unknown(0) TCGA-58-8393-01 1 158057892 158057892 G C KIRREL Missense_Mutation p.E288D 0.09 deleterious(0.01) possibly_damaging(0.698) TCGA-58-8393-01 1 158226841 158226841 C T CD1A Silent p.I290I 0.15 TCGA-58-8393-01 1 159284102 159284102 G A OR10J3 Silent p.L116L 0.08 TCGA-58-8393-01 1 161495631 161495631 C A HSPA6 Missense_Mutation p.L395M 0.22 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-58-8393-01 1 16255409 16255409 G C SPEN Missense_Mutation p.D892H 0.03 possibly_damaging(0.868) TCGA-58-8393-01 1 16257014 16257014 G C SPEN Missense_Mutation p.E1427Q 0.04 probably_damaging(0.993) TCGA-58-8393-01 1 16257776 16257776 G C SPEN Missense_Mutation p.E1681Q 0.04 benign(0.193) TCGA-58-8393-01 1 168513200 168513200 C A XCL2 Translation_Start_Site p.M1? 0.32 deleterious(0.01) benign(0.107) TCGA-58-8393-01 1 186050426 186050426 C G HMCN1 Missense_Mutation p.S2896C 0.05 possibly_damaging(0.9) TCGA-58-8393-01 1 193045085 193045085 G C TROVE2 Missense_Mutation p.R239T 0.27 tolerated(0.55) benign(0.006) TCGA-58-8393-01 1 201046066 201046066 G A CACNA1S Silent p.A603A 0.32 TCGA-58-8393-01 1 202288359 202288359 C T LGR6 3'UTR 0.10 TCGA-58-8393-01 1 208224696 208224696 C G PLXNA2 Silent p.V1022V 0.09 TCGA-58-8393-01 1 208390478 208390478 C G PLXNA2 Missense_Mutation p.E264Q 0.28 tolerated(1) probably_damaging(0.982) TCGA-58-8393-01 1 21799981 21799981 G A NBPF3 Silent p.G281G 0.15 TCGA-58-8393-01 1 228503685 228503685 G A OBSCN Missense_Mutation p.E5341K 0.23 probably_damaging(0.935) TCGA-58-8393-01 1 231672964 231672964 C T TSNAX Nonsense_Mutation p.Q43* 0.12 TCGA-58-8393-01 1 246922442 246922442 G C SCCPDH Missense_Mutation p.E268Q 0.18 tolerated(0.69) benign(0.009) TCGA-58-8393-01 1 247048873 247048873 C G AHCTF1 Missense_Mutation p.R870T 0.21 deleterious(0.01) probably_damaging(0.993) TCGA-58-8393-01 1 247655389 247655389 C G OR2W5 RNA 0.31 TCGA-58-8393-01 1 248031277 248031277 C T TRIM58 Silent p.V261V 0.12 TCGA-58-8393-01 1 249144711 249144711 C G ZNF692 Missense_Mutation p.E425Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-58-8393-01 1 26510603 26510603 A G CNKSR1 Silent p.P299P 0.27 TCGA-58-8393-01 1 28802687 28802687 C T PHACTR4 Missense_Mutation p.S507L 0.27 tolerated(0.07) possibly_damaging(0.611) TCGA-58-8393-01 1 28818228 28818228 G C PHACTR4 Missense_Mutation p.E659Q 0.19 deleterious(0) possibly_damaging(0.906) TCGA-58-8393-01 1 29319973 29319973 C T EPB41 Silent p.S200S 0.30 TCGA-58-8393-01 1 70819841 70819841 G A ANKRD13C Missense_Mutation p.S84F 0.28 tolerated_low_confidence(0.05) benign(0.033) TCGA-58-8393-01 1 75038972 75038972 G A C1orf173 Missense_Mutation p.P808S 0.33 tolerated(0.07) possibly_damaging(0.857) TCGA-58-8393-01 1 76779611 76779611 G C ST6GALNAC3 Missense_Mutation p.W47S 0.29 benign(0.016) TCGA-58-8393-01 1 87200324 87200324 C A SH3GLB1 Missense_Mutation p.R225S 0.23 deleterious(0.03) benign(0.361) TCGA-58-8393-01 20 13756719 13756719 C G ESF1 Missense_Mutation p.D279H 0.22 deleterious_low_confidence(0.04) benign(0.032) TCGA-58-8393-01 20 20486159 20486159 C T RALGAPA2 Missense_Mutation p.A1650T 0.17 deleterious(0) probably_damaging(0.999) TCGA-58-8393-01 20 32981683 32981683 C T ITCH Silent p.I22I 0.23 TCGA-58-8393-01 20 33059256 33059256 C - ITCH Frame_Shift_Del p.M544Cfs*5 0.13 TCGA-58-8393-01 20 3672816 3672816 C A SIGLEC1 Missense_Mutation p.R1355L 0.24 tolerated(1) benign(0.017) TCGA-58-8393-01 20 42198130 42198130 G A SGK2 Missense_Mutation p.V172M 0.19 deleterious(0) probably_damaging(0.997) TCGA-58-8393-01 20 43926657 43926657 C T MATN4 Missense_Mutation p.E494K 0.21 benign(0.071) TCGA-58-8393-01 20 47991460 47991460 C G KCNB1 Missense_Mutation p.E213Q 0.09 tolerated(0.08) possibly_damaging(0.701) TCGA-58-8393-01 20 61288271 61288271 C G SLCO4A1 Silent p.L155L 0.08 TCGA-58-8393-01 21 22804538 22804538 C T NCAM2 Nonsense_Mutation p.Q531* 0.07 TCGA-58-8393-01 21 34915412 34915412 T C SON Missense_Mutation p.I5T 0.27 benign(0.152) TCGA-58-8393-01 21 47961724 47961724 C T DIP2A Silent p.L698L 0.17 TCGA-58-8393-01 22 18912586 18912586 G C PRODH Missense_Mutation p.F215L 0.14 tolerated(0.07) benign(0.309) TCGA-58-8393-01 22 29105996 29105996 G C CHEK2 Missense_Mutation p.H325D 0.25 deleterious(0) probably_damaging(0.971) TCGA-58-8393-01 22 31679244 31679244 C G PIK3IP1 Missense_Mutation p.Q206H 0.10 deleterious(0.01) benign(0.02) TCGA-58-8393-01 22 31722855 31722855 C T PATZ1 3'UTR 0.22 TCGA-58-8393-01 22 41545047 41545047 G A EP300 Missense_Mutation p.M749I 0.12 unknown(0) TCGA-58-8393-01 22 51018224 51018224 C T CHKB Silent p.K321K 0.19 TCGA-58-8393-01 2 136626327 136626327 G A MCM6 Silent p.L157L 0.34 TCGA-58-8393-01 2 175612872 175612872 C T CHRNA1 Missense_Mutation p.E477K 0.26 deleterious(0.05) probably_damaging(0.953) TCGA-58-8393-01 2 178098951 178098953 CTC - NFE2L2 In_Frame_Del p.G31del 0.42 TCGA-58-8393-01 2 182322575 182322575 G A ITGA4 Missense_Mutation p.R65Q 0.30 deleterious(0.03) possibly_damaging(0.525) TCGA-58-8393-01 2 190617440 190617440 C G OSGEPL1 Missense_Mutation p.E369Q 0.32 deleterious(0) probably_damaging(0.973) TCGA-58-8393-01 2 190617597 190617597 C G OSGEPL1 Missense_Mutation p.D358H 0.17 deleterious(0) probably_damaging(0.999) TCGA-58-8393-01 2 191841656 191841656 C T STAT1 Missense_Mutation p.E657K 0.27 tolerated(0.08) possibly_damaging(0.746) TCGA-58-8393-01 2 207170886 207170886 C A ZDBF2 Missense_Mutation p.P545Q 0.33 deleterious(0) probably_damaging(0.954) TCGA-58-8393-01 2 220399913 220399913 G C ASIC4 Missense_Mutation p.E474Q 0.06 tolerated(0.36) benign(0.023) TCGA-58-8393-01 2 24443816 24443816 C T ITSN2 Missense_Mutation p.E1233K 0.04 deleterious(0.02) unknown(0) TCGA-58-8393-01 2 27707899 27707899 C G IFT172 Missense_Mutation p.K94N 0.11 deleterious(0) probably_damaging(0.976) TCGA-58-8393-01 2 27800715 27800715 C G C2orf16 Missense_Mutation p.Q426E 0.28 deleterious(0.01) probably_damaging(0.917) TCGA-58-8393-01 2 32704640 32704640 C T BIRC6 Nonsense_Mutation p.Q2455* 0.26 TCGA-58-8393-01 2 33952294 33952294 G C AC009499.1 Intron 0.07 TCGA-58-8393-01 2 61456728 61456728 C T USP34 Missense_Mutation p.R2385K 0.13 tolerated(0.22) benign(0.049) TCGA-58-8393-01 2 69597225 69597225 C T GFPT1 Missense_Mutation p.G44E 0.06 deleterious(0.02) benign(0.445) TCGA-58-8393-01 2 79350061 79350061 G T REG1A Missense_Mutation p.S139I 0.23 tolerated(0.07) probably_damaging(0.972) TCGA-58-8393-01 2 96992878 96992878 C G ITPRIPL1 Missense_Mutation p.S178C 0.13 tolerated(0.11) possibly_damaging(0.518) TCGA-58-8393-01 2 97526683 97526683 C G SEMA4C Missense_Mutation p.E728Q 0.12 deleterious(0.04) probably_damaging(0.998) TCGA-58-8393-01 3 122002922 122002922 G T CASR Missense_Mutation p.E717D 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-58-8393-01 3 122254878 122254878 C G PARP9 Intron 0.05 TCGA-58-8393-01 3 122354843 122354843 G A PARP15 Missense_Mutation p.D645N 0.17 deleterious(0.04) possibly_damaging(0.586) TCGA-58-8393-01 3 125877408 125877408 C G ALDH1L1 Missense_Mutation p.D78H 0.18 deleterious_low_confidence(0) possibly_damaging(0.678) TCGA-58-8393-01 3 134851565 134851565 C G EPHB1 Nonsense_Mutation p.S324* 0.10 TCGA-58-8393-01 3 141289819 141289819 G A RASA2 Missense_Mutation p.R310Q 0.07 deleterious(0) benign(0.031) TCGA-58-8393-01 3 143691295 143691295 C T C3orf58 Missense_Mutation p.R41C 0.26 deleterious(0.01) possibly_damaging(0.555) TCGA-58-8393-01 3 151545396 151545396 C T AADAC Silent p.L212L 0.13 TCGA-58-8393-01 3 167508293 167508293 G T SERPINI1 Missense_Mutation p.M128I 0.22 tolerated(0.37) benign(0.008) TCGA-58-8393-01 3 167728199 167728199 T A GOLIM4 Missense_Mutation p.D650V 0.23 deleterious(0.03) benign(0.027) TCGA-58-8393-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.17 deleterious(0.04) probably_damaging(0.96) TCGA-58-8393-01 3 179519743 179519743 G A PEX5L Missense_Mutation p.A585V 0.15 tolerated(0.82) benign(0.001) TCGA-58-8393-01 3 186299223 186299223 G A DNAJB11 Missense_Mutation p.E174K 0.10 deleterious(0) possibly_damaging(0.526) TCGA-58-8393-01 3 192517195 192517195 G C MB21D2 Silent p.L152L 0.11 TCGA-58-8393-01 3 194081218 194081218 G C LRRC15 Silent p.L191L 0.08 TCGA-58-8393-01 3 195295718 195295718 G C APOD 3'UTR 0.08 TCGA-58-8393-01 3 197639578 197639578 C G IQCG Missense_Mutation p.E311Q 0.19 deleterious(0) probably_damaging(0.946) TCGA-58-8393-01 3 39437953 39437953 C T SLC25A38 Missense_Mutation p.A286V 0.28 deleterious(0) probably_damaging(0.994) TCGA-58-8393-01 3 46755832 46755832 G C PRSS50 Silent p.L210L 0.16 TCGA-58-8393-01 3 48664098 48664098 C T SLC26A6 Silent p.E698E 0.29 TCGA-58-8393-01 3 48688444 48688444 G C CELSR3 Missense_Mutation p.S2084C 0.16 deleterious(0) probably_damaging(1) TCGA-58-8393-01 3 52097424 52097424 C G LINC00696 Silent p.G48G 0.28 TCGA-58-8393-01 3 73096390 73096390 T G PPP4R2 Missense_Mutation p.M57R 0.31 deleterious(0) possibly_damaging(0.789) TCGA-58-8393-01 3 78648003 78648003 G A ROBO1 3'UTR 0.09 TCGA-58-8393-01 3 9827088 9827088 C T TADA3 Missense_Mutation p.E278K 0.08 deleterious(0.02) benign(0.366) TCGA-58-8393-01 4 103459092 103459092 G C NFKB1 Missense_Mutation p.K79N 0.20 deleterious(0.01) benign(0.111) TCGA-58-8393-01 4 104044246 104044246 C A CENPE Missense_Mutation p.A2309S 0.22 possibly_damaging(0.578) TCGA-58-8393-01 4 134073324 134073324 C T PCDH10 Nonsense_Mutation p.Q677* 0.11 TCGA-58-8393-01 4 148601479 148601479 G C PRMT10 Silent p.L111L 0.28 TCGA-58-8393-01 4 158242640 158242640 C A GRIA2 Silent p.V257V 0.08 TCGA-58-8393-01 4 170999668 170999668 G A AADAT Missense_Mutation p.L146F 0.38 deleterious(0) probably_damaging(0.993) TCGA-58-8393-01 4 36122944 36122944 G T ARAP2 Missense_Mutation p.Q1251K 0.06 deleterious(0) probably_damaging(0.986) TCGA-58-8393-01 4 62910180 62910180 C T LPHN3 Missense_Mutation p.R1175C 0.29 deleterious(0) probably_damaging(0.992) TCGA-58-8393-01 5 102309972 102309972 G A PAM Missense_Mutation p.D439N 0.33 tolerated(0.41) probably_damaging(0.991) TCGA-58-8393-01 5 131039933 131039933 G A FNIP1 Missense_Mutation p.S314L 0.31 deleterious(0) possibly_damaging(0.636) TCGA-58-8393-01 5 140905701 140905701 C G DIAPH1 Missense_Mutation p.E1160Q 0.16 probably_damaging(0.977) TCGA-58-8393-01 5 145608582 145608582 C T RBM27 Missense_Mutation p.S126L 0.18 tolerated(0.1) benign(0.006) TCGA-58-8393-01 5 168098357 168098357 A G SLIT3 Missense_Mutation p.S1325P 0.34 tolerated(0.81) benign(0.247) TCGA-58-8393-01 5 175823488 175823488 G A CLTB Silent p.I170I 0.19 TCGA-58-8393-01 5 178358915 178358915 C G ZFP2 Missense_Mutation p.L201V 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-58-8393-01 5 32074559 32074559 C T PDZD2 Missense_Mutation p.S1116F 0.11 deleterious(0.01) benign(0.069) TCGA-58-8393-01 5 32074631 32074631 C T PDZD2 Missense_Mutation p.S1140L 0.10 tolerated(0.26) benign(0.006) TCGA-58-8393-01 5 32090817 32090817 G A PDZD2 Missense_Mutation p.M2421I 0.29 tolerated(0.12) benign(0.049) TCGA-58-8393-01 5 33527312 33527312 T C ADAMTS12 Missense_Mutation p.Q1589R 0.24 tolerated(0.33) unknown(0) TCGA-58-8393-01 5 42719002 42719002 G A GHR Missense_Mutation p.E465K 0.20 tolerated(0.06) benign(0.426) TCGA-58-8393-01 5 442919 442919 A G C5orf55 Silent p.L7L 0.16 TCGA-58-8393-01 5 65349361 65349361 G C ERBB2IP Missense_Mutation p.E739Q 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.698) TCGA-58-8393-01 6 109476454 109476454 G C CEP57L1 Missense_Mutation p.E201Q 0.16 tolerated(0.2) probably_damaging(0.913) TCGA-58-8393-01 6 112397671 112397671 C T TUBE1 Missense_Mutation p.E164K 0.19 tolerated(0.13) benign(0.015) TCGA-58-8393-01 6 139247543 139247543 C T REPS1 Missense_Mutation p.D445N 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-58-8393-01 6 150710562 150710562 G C IYD Missense_Mutation p.E85Q 0.20 deleterious(0.03) possibly_damaging(0.577) TCGA-58-8393-01 6 152694217 152694217 C T SYNE1 Nonsense_Mutation p.W3154* 0.26 TCGA-58-8393-01 6 18163117 18163117 A G KDM1B Silent p.E89E 0.19 TCGA-58-8393-01 6 27114571 27114571 C T HIST1H2BK Missense_Mutation p.E3K 0.09 deleterious_low_confidence(0.03) unknown(0) TCGA-58-8393-01 6 30227818 30227818 G A HCG17 Intron 0.10 TCGA-58-8393-01 6 39895123 39895123 G C MOCS1 Missense_Mutation p.F65L 0.12 deleterious(0) probably_damaging(0.961) TCGA-58-8393-01 6 401492 401492 G A IRF4 Missense_Mutation p.E272K 0.23 deleterious(0.01) possibly_damaging(0.721) TCGA-58-8393-01 6 41250379 41250379 C G TREM1 Missense_Mutation p.A54P 0.21 deleterious(0) probably_damaging(0.999) TCGA-58-8393-01 6 42025181 42025181 G A TAF8 Missense_Mutation p.R140Q 0.27 tolerated(0.53) benign(0.079) TCGA-58-8393-01 6 43014801 43014801 C T CUL7 Silent p.V822V 0.25 TCGA-58-8393-01 6 47846115 47846115 C T PTCHD4 Missense_Mutation p.R822H 0.19 tolerated(0.11) benign(0.379) TCGA-58-8393-01 6 7373693 7373693 C G CAGE1 Missense_Mutation p.E453D 0.17 deleterious(0.03) benign(0.031) TCGA-58-8393-01 6 76751653 76751653 C G IMPG1 Missense_Mutation p.M86I 0.25 tolerated(0.08) benign(0.139) TCGA-58-8393-01 6 90660524 90660524 G A BACH2 Missense_Mutation p.S434F 0.32 deleterious(0) probably_damaging(0.999) TCGA-58-8393-01 6 96034610 96034610 C T MANEA Silent p.L99L 0.09 TCGA-58-8393-01 7 100187605 100187605 G C FBXO24 Missense_Mutation p.K53N 0.19 deleterious_low_confidence(0) benign(0.403) TCGA-58-8393-01 7 107423684 107423684 G T SLC26A3 Missense_Mutation p.S362Y 0.29 deleterious(0) probably_damaging(0.988) TCGA-58-8393-01 7 120382612 120382612 G C KCND2 Missense_Mutation p.E475Q 0.22 tolerated_low_confidence(0.06) benign(0.34) TCGA-58-8393-01 7 128451911 128451911 C G CCDC136 Missense_Mutation p.Q696E 0.17 tolerated(0.24) benign(0.026) TCGA-58-8393-01 7 150554127 150554127 G A AOC1 Missense_Mutation p.R190Q 0.26 deleterious(0.04) possibly_damaging(0.746) TCGA-58-8393-01 7 150923506 150923506 C G ABCF2 Missense_Mutation p.K13N 0.25 deleterious(0.01) probably_damaging(0.995) TCGA-58-8393-01 7 27134258 27134258 T A HOXA1 Missense_Mutation p.E270V 0.28 deleterious(0) probably_damaging(0.978) TCGA-58-8393-01 7 35029545 35029545 C G DPY19L1 Missense_Mutation p.R185P 0.23 tolerated(0.21) benign(0.111) TCGA-58-8393-01 7 50450326 50450326 G A IKZF1 Silent p.E170E 0.29 TCGA-58-8393-01 7 76254968 76254968 G A POMZP3 Missense_Mutation p.S33L 0.24 tolerated_low_confidence(0.07) unknown(0) TCGA-58-8393-01 8 10468768 10468768 G C RP1L1 Missense_Mutation p.S947C 0.28 benign(0.192) TCGA-58-8393-01 8 109796537 109796537 C G TMEM74 Missense_Mutation p.R264T 0.17 tolerated(0.6) possibly_damaging(0.804) TCGA-58-8393-01 8 109796575 109796575 C T TMEM74 Missense_Mutation p.M251I 0.22 deleterious(0) probably_damaging(0.915) TCGA-58-8393-01 8 109796892 109796892 C G TMEM74 Missense_Mutation p.E146Q 0.20 deleterious(0.03) possibly_damaging(0.849) TCGA-58-8393-01 8 116427141 116427141 C T TRPS1 Missense_Mutation p.D999N 0.18 deleterious_low_confidence(0) possibly_damaging(0.496) TCGA-58-8393-01 8 133918965 133918965 G A TG Missense_Mutation p.E1223K 0.13 tolerated(0.49) benign(0.055) TCGA-58-8393-01 8 143956510 143956510 C T CYP11B1 Missense_Mutation p.E421K 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-58-8393-01 8 145095075 145095075 G A SPATC1 Silent p.L159L 0.26 TCGA-58-8393-01 8 146107604 146107604 G T ZNF250 Silent p.R327R 0.07 TCGA-58-8393-01 8 3081318 3081318 G A CSMD1 Missense_Mutation p.P1473S 0.30 possibly_damaging(0.492) TCGA-58-8393-01 8 38003500 38003500 C G STAR Missense_Mutation p.E211Q 0.14 tolerated(0.29) benign(0.009) TCGA-58-8393-01 8 53555345 53555345 C A RB1CC1 Nonsense_Mutation p.E1339* 0.20 TCGA-58-8393-01 8 56015664 56015664 G A XKR4 Missense_Mutation p.E206K 0.09 tolerated(0.89) benign(0.071) TCGA-58-8393-01 8 68178417 68178417 C T ARFGEF1 Silent p.E649E 0.13 TCGA-58-8393-01 8 69028147 69028147 C T PREX2 Silent p.I1102I 0.24 TCGA-58-8393-01 8 8176056 8176056 C A SGK223 Missense_Mutation p.D1277Y 0.40 probably_damaging(0.999) TCGA-58-8393-01 8 94713635 94713635 G C FAM92A1 Silent p.L70L 0.33 TCGA-58-8393-01 8 97316359 97316361 TCT - PTDSS1 In_Frame_Del p.S283del 0.20 TCGA-58-8393-01 9 107624041 107624041 G A ABCA1 Silent p.F154F 0.29 TCGA-58-8393-01 9 109690433 109690433 G A ZNF462 Missense_Mutation p.E1414K 0.27 benign(0.106) TCGA-58-8393-01 9 136507567 136507567 C G DBH Missense_Mutation p.S242C 0.42 deleterious(0.01) possibly_damaging(0.778) TCGA-58-8393-01 9 139243177 139243177 G A GPSM1 Silent p.L412L 0.31 TCGA-58-8393-01 9 8485925 8485925 G A PTPRD Silent p.P964P 0.20 TCGA-58-8393-01 9 90500166 90500166 C T SPATA31E1 Missense_Mutation p.S255F 0.30 deleterious(0.04) possibly_damaging(0.78) TCGA-58-8393-01 9 94172002 94172002 C G NFIL3 Missense_Mutation p.E339Q 0.06 deleterious(0) probably_damaging(1) TCGA-58-8393-01 9 95477607 95477607 G C BICD2 Silent p.L799L 0.28 TCGA-58-8393-01 X 103359354 103359354 G A ZCCHC18 Silent p.L184L 0.14 TCGA-58-8393-01 X 107225021 107225021 C T TEX13B Missense_Mutation p.E113K 0.13 tolerated(0.69) benign(0.012) TCGA-58-8393-01 X 107377642 107377642 G C ATG4A Splice_Site p.X156_splice 0.31 TCGA-58-8393-01 X 110574218 110574218 G A DCX Missense_Mutation p.S368F 0.10 tolerated(0.07) benign(0.396) TCGA-58-8393-01 X 111078176 111078176 C T TRPC5 Missense_Mutation p.M623I 0.24 deleterious(0) possibly_damaging(0.53) TCGA-58-8393-01 X 111078262 111078262 C T TRPC5 Missense_Mutation p.E595K 0.20 tolerated(0.53) benign(0.142) TCGA-58-8393-01 X 134686070 134686070 A T DDX26B Missense_Mutation p.Q353L 0.20 deleterious(0) possibly_damaging(0.838) TCGA-58-8393-01 X 135290090 135290090 G T FHL1 Missense_Mutation p.K157N 0.13 deleterious(0.01) probably_damaging(0.977) TCGA-58-8393-01 X 142718752 142718752 C T SLITRK4 Nonsense_Mutation p.W58* 0.17 TCGA-58-8393-01 X 148798337 148798337 G A MAGEA11 Missense_Mutation p.M397I 0.23 deleterious(0.04) possibly_damaging(0.823) TCGA-58-8393-01 X 150844594 150844594 T C PASD1 Silent p.R767R 0.12 TCGA-58-8393-01 X 21896236 21896236 T G MBTPS2 Missense_Mutation p.N349K 0.14 tolerated(0.7) benign(0.007) TCGA-58-8393-01 X 37028677 37028677 G A FAM47C Missense_Mutation p.E732K 0.24 tolerated(0.32) benign(0) TCGA-58-8393-01 X 37663307 37663307 G T CYBB Missense_Mutation p.G359W 0.26 deleterious(0) probably_damaging(1) TCGA-58-8393-01 X 41332952 41332952 C T NYX Silent p.F82F 0.17 TCGA-58-8393-01 X 48370277 48370277 C T PORCN Intron 0.23 TCGA-58-8393-01 X 48419195 48419195 C T TBC1D25 Silent p.I633I 0.18 TCGA-58-8393-01 X 49020896 49020896 G A MAGIX Intron 0.11 TCGA-58-8393-01 X 53247572 53247572 C T KDM5C Silent p.T79T 0.19 TCGA-58-8393-01 X 53661187 53661187 C T HUWE1 Splice_Site p.X189_splice 0.20 TCGA-58-8393-01 X 64718968 64718968 G C ZC3H12B Missense_Mutation p.D280H 0.21 deleterious(0) probably_damaging(1) TCGA-58-8393-01 X 70340020 70340020 G A MED12 Missense_Mutation p.E185K 0.05 possibly_damaging(0.541) TCGA-58-8393-01 X 73962640 73962640 C G KIAA2022 Missense_Mutation p.L584F 0.14 deleterious(0) probably_damaging(0.999) TCGA-58-8393-01 X 77270207 77270207 G T ATP7A Nonsense_Mutation p.E819* 0.09 TCGA-58-8393-01 X 78011040 78011040 C T LPAR4 Missense_Mutation p.S225F 0.18 tolerated(0.07) benign(0.302) TCGA-58-8393-01 X 86919915 86919915 C T KLHL4 Nonsense_Mutation p.Q693* 0.14 TCGA-58-8393-01 X 96354708 96354708 C T DIAPH2 Missense_Mutation p.L755F 0.19 deleterious(0.02) probably_damaging(0.996) TCGA-58-A46J-01 10 115970438 115970438 G A TDRD1 Missense_Mutation p.E495K 0.13 tolerated(0.43) benign(0.004) TCGA-58-A46J-01 10 129868636 129868636 C T PTPRE Silent p.S405S 0.15 TCGA-58-A46J-01 10 48428663 48428663 G A GDF10 Missense_Mutation p.A408V 0.22 tolerated(0.15) benign(0.064) TCGA-58-A46J-01 10 55568867 55568867 G T PCDH15 Missense_Mutation p.T582K 0.19 deleterious_low_confidence(0) unknown(0) TCGA-58-A46J-01 11 118039344 118039344 G C SCN2B Missense_Mutation p.L65V 0.16 tolerated(0.71) possibly_damaging(0.615) TCGA-58-A46J-01 11 132306124 132306124 T A OPCML Missense_Mutation p.T265S 0.05 tolerated(0.33) benign(0.044) TCGA-58-A46J-01 11 134253974 134253974 G T B3GAT1 Missense_Mutation p.T74K 0.11 tolerated(0.27) benign(0.008) TCGA-58-A46J-01 11 17483151 17483151 G - ABCC8 Frame_Shift_Del p.C267Wfs*92 0.15 TCGA-58-A46J-01 11 35547162 35547162 A G PAMR1 5'UTR 0.23 TCGA-58-A46J-01 11 44950805 44950805 C A TSPAN18 3'UTR 0.10 TCGA-58-A46J-01 11 5172761 5172761 G T OR52A1 Missense_Mutation p.S280Y 0.12 deleterious(0) probably_damaging(0.988) TCGA-58-A46J-01 11 56431546 56431546 C T OR5AR1 Missense_Mutation p.P129S 0.09 deleterious(0) possibly_damaging(0.802) TCGA-58-A46J-01 11 56431968 56431968 C A OR5AR1 Missense_Mutation p.D269E 0.11 tolerated(0.08) benign(0.026) TCGA-58-A46J-01 11 56431969 56431969 C A OR5AR1 Missense_Mutation p.Q270K 0.11 tolerated(0.1) benign(0.239) TCGA-58-A46J-01 11 5719713 5719713 G C TRIM22 Missense_Mutation p.A230P 0.21 deleterious(0) possibly_damaging(0.514) TCGA-58-A46J-01 11 57373944 57373944 C G SERPING1 Nonsense_Mutation p.S318* 0.09 TCGA-58-A46J-01 11 58477124 58477124 A G GLYAT 3'UTR 0.29 TCGA-58-A46J-01 11 5906095 5906095 T A OR52E4 Nonsense_Mutation p.C191* 0.15 TCGA-58-A46J-01 11 6048799 6048799 T A OR56A1 Missense_Mutation p.M46L 0.10 tolerated(1) benign(0.004) TCGA-58-A46J-01 11 64136978 64136978 A T RPS6KA4 Nonsense_Mutation p.K497* 0.14 TCGA-58-A46J-01 11 6942890 6942890 G A OR2D3 Missense_Mutation p.V220M 0.09 deleterious(0.01) possibly_damaging(0.805) TCGA-58-A46J-01 11 788472 788472 G A CEND1 Silent p.P35P 0.04 TCGA-58-A46J-01 11 94318650 94318650 C T PIWIL4 Silent p.N225N 0.14 TCGA-58-A46J-01 12 109519795 109519795 C A USP30 Silent p.R280R 0.11 TCGA-58-A46J-01 12 113334630 113334630 C A RPH3A 3'UTR 0.24 TCGA-58-A46J-01 12 126139081 126139081 G A TMEM132B Missense_Mutation p.R1021K 0.20 deleterious(0.01) possibly_damaging(0.654) TCGA-58-A46J-01 12 132426499 132426499 G T PUS1 Missense_Mutation p.A403S 0.28 tolerated_low_confidence(0.16) benign(0.026) TCGA-58-A46J-01 12 133732291 133732291 C A ZNF10 Silent p.T153T 0.14 TCGA-58-A46J-01 12 13716540 13716540 C A GRIN2B Missense_Mutation p.G1211V 0.13 tolerated(0.12) benign(0.144) TCGA-58-A46J-01 12 1940577 1940577 C T LRTM2 Silent p.L182L 0.14 TCGA-58-A46J-01 12 20903769 20903769 C T SLCO1C1 Silent p.I653I 0.13 TCGA-58-A46J-01 12 25679840 25679840 C T IFLTD1 Missense_Mutation p.V181M 0.15 deleterious(0) possibly_damaging(0.9) TCGA-58-A46J-01 12 45410072 45410072 G T DBX2 Silent p.V339V 0.13 TCGA-58-A46J-01 12 56524657 56524657 C T ESYT1 Missense_Mutation p.S172F 0.19 deleterious(0) probably_damaging(0.951) TCGA-58-A46J-01 12 71139677 71139677 C A PTPRR Missense_Mutation p.A310S 0.23 tolerated(0.26) benign(0.001) TCGA-58-A46J-01 12 73014936 73014936 C A TRHDE Missense_Mutation p.P795T 0.12 tolerated(0.51) possibly_damaging(0.87) TCGA-58-A46J-01 12 77440002 77440002 C A E2F7 Silent p.L215L 0.18 TCGA-58-A46J-01 12 8211572 8211572 C G C3AR1 Missense_Mutation p.D404H 0.14 tolerated(0.06) benign(0.06) TCGA-58-A46J-01 12 9256842 9256842 G T A2M Missense_Mutation p.T420N 0.18 tolerated(0.41) benign(0.003) TCGA-58-A46J-01 13 49772239 49772239 A G FNDC3A Missense_Mutation p.H871R 0.25 tolerated(0.56) benign(0.002) TCGA-58-A46J-01 13 77595829 77595829 C A FBXL3 Missense_Mutation p.R56L 0.32 tolerated(0.06) probably_damaging(0.981) TCGA-58-A46J-01 14 102028349 102028349 G T DIO3 Silent p.P172P 0.20 TCGA-58-A46J-01 14 20249184 20249184 A T OR4M1 Missense_Mutation p.T235S 0.04 tolerated(0.5) benign(0.005) TCGA-58-A46J-01 14 20295646 20295646 C A OR4N2 Silent p.I13I 0.07 TCGA-58-A46J-01 14 20443805 20443805 G T OR4K15 Missense_Mutation p.S43I 0.18 deleterious(0.02) benign(0.252) TCGA-58-A46J-01 14 20978663 20978663 G A RNASE10 Missense_Mutation p.M11I 0.15 tolerated_low_confidence(0.15) benign(0.001) TCGA-58-A46J-01 14 22356676 22356676 G T TRAV12-2 Missense_Mutation p.V112L 0.16 tolerated(0.08) benign(0.125) TCGA-58-A46J-01 14 52534658 52534658 G T NID2 Missense_Mutation p.T151N 0.22 tolerated(0.08) benign(0.009) TCGA-58-A46J-01 14 77948962 77948962 G A ISM2 Silent p.L226L 0.22 TCGA-58-A46J-01 15 102182803 102182803 T C TM2D3 Missense_Mutation p.Q208R 0.06 deleterious(0.04) probably_damaging(0.954) TCGA-58-A46J-01 15 25494370 25494370 G A SNORD115-43 RNA 0.17 TCGA-58-A46J-01 15 43900092 43900092 C T STRC Missense_Mutation p.G1255R 0.25 tolerated(0.27) possibly_damaging(0.814) TCGA-58-A46J-01 15 55742519 55742519 A T DYX1C1 Missense_Mutation p.S228R 0.31 tolerated(0.55) benign(0.001) TCGA-58-A46J-01 15 85400701 85400701 C T ALPK3 Missense_Mutation p.T1113I 0.17 tolerated_low_confidence(0.06) benign(0.016) TCGA-58-A46J-01 15 89388927 89388927 G T ACAN Nonsense_Mutation p.E415* 0.17 TCGA-58-A46J-01 16 10721361 10721361 C G TEKT5 3'UTR 0.20 TCGA-58-A46J-01 16 31925821 31925821 A G ZNF267 Missense_Mutation p.D84G 0.20 tolerated(0.13) benign(0.036) TCGA-58-A46J-01 16 46638375 46638375 T A SHCBP1 Splice_Site p.X230_splice 0.23 TCGA-58-A46J-01 16 68289826 68289826 C G PLA2G15 Missense_Mutation p.I220M 0.14 deleterious(0) probably_damaging(0.997) TCGA-58-A46J-01 17 29664419 29664447 CAGAGTTCTCATTACCCAAATTTTACTTG - NF1 Frame_Shift_Del p.E2155Vfs*4 0.20 TCGA-58-A46J-01 17 34182182 34182182 G T C17orf66 Missense_Mutation p.T533K 0.31 tolerated(0.94) benign(0) TCGA-58-A46J-01 17 42289330 42289330 G A UBTF Silent p.I272I 0.28 TCGA-58-A46J-01 17 42290202 42290202 G C UBTF Silent p.L215L 0.28 TCGA-58-A46J-01 17 46133939 46133940 - G NFE2L1 Frame_Shift_Ins p.E236Gfs*9 0.24 TCGA-58-A46J-01 17 47041770 47041770 C T GIP Silent p.A53A 0.33 TCGA-58-A46J-01 17 48750349 48750349 G A ABCC3 Silent p.G753G 0.31 TCGA-58-A46J-01 17 6498302 6498302 T C KIAA0753 Silent p.E810E 0.45 TCGA-58-A46J-01 17 65850103 65850103 G C BPTF Missense_Mutation p.E221Q 0.12 possibly_damaging(0.46) TCGA-58-A46J-01 17 66381313 66381313 G C ARSG Missense_Mutation p.S364T 0.24 deleterious(0.01) possibly_damaging(0.536) TCGA-58-A46J-01 17 7481921 7481921 A G EIF4A1 3'UTR 0.70 TCGA-58-A46J-01 17 7577090 7577090 C G TP53 Missense_Mutation p.R283P 0.32 deleterious(0.01) probably_damaging(0.978) TCGA-58-A46J-01 17 7798386 7798386 G T CHD3 Missense_Mutation p.C533F 0.38 possibly_damaging(0.639) TCGA-58-A46J-01 17 7798387 7798387 C G CHD3 Missense_Mutation p.C533W 0.37 possibly_damaging(0.892) TCGA-58-A46J-01 18 22806063 22806063 G T ZNF521 Missense_Mutation p.L607I 0.17 tolerated(0.21) benign(0.377) TCGA-58-A46J-01 18 2688476 2688476 A G SMCHD1 Silent p.Q241Q 0.11 TCGA-58-A46J-01 18 31318702 31318702 C T ASXL3 Missense_Mutation p.P445L 0.18 benign(0.33) TCGA-58-A46J-01 18 31432854 31432854 T A NOL4 Missense_Mutation p.L623F 0.10 deleterious(0) probably_damaging(0.999) TCGA-58-A46J-01 18 44627311 44627311 A T KATNAL2 Nonsense_Mutation p.K446* 0.19 TCGA-58-A46J-01 18 47390625 47390625 C A MYO5B Silent p.L1243L 0.15 TCGA-58-A46J-01 19 12298685 12298685 C T ZNF136 Missense_Mutation p.H498Y 0.08 deleterious(0.01) probably_damaging(0.994) TCGA-58-A46J-01 19 22155575 22155575 C G ZNF208 Missense_Mutation p.C754S 0.12 deleterious(0) possibly_damaging(0.901) TCGA-58-A46J-01 19 34818924 34818924 G T KIAA0355 Missense_Mutation p.Q324H 0.16 deleterious(0.01) probably_damaging(0.977) TCGA-58-A46J-01 19 38591714 38591714 G A SIPA1L3 Missense_Mutation p.G626D 0.12 deleterious(0) probably_damaging(0.988) TCGA-58-A46J-01 19 40030391 40030391 C T EID2 Missense_Mutation p.R110H 0.14 deleterious(0) unknown(0) TCGA-58-A46J-01 19 44223571 44223571 C G IRGC Silent p.A287A 0.16 TCGA-58-A46J-01 19 46998468 46998468 C T PNMAL2 Silent p.K85K 0.18 TCGA-58-A46J-01 19 49527246 49527246 C T CGB 5'UTR 0.13 TCGA-58-A46J-01 19 50149812 50149812 C T SCAF1 Silent p.L97L 0.06 TCGA-58-A46J-01 19 50247502 50247503 - C TSKS Frame_Shift_Ins p.C449Wfs*119 0.12 TCGA-58-A46J-01 19 52004840 52004840 G T SIGLEC12 Missense_Mutation p.Q50K 0.08 tolerated(0.93) benign(0.149) TCGA-58-A46J-01 19 52004841 52004841 G T SIGLEC12 Silent p.P49P 0.09 TCGA-58-A46J-01 19 5214599 5214599 C A PTPRS Missense_Mutation p.M1489I 0.10 deleterious(0) probably_damaging(0.997) TCGA-58-A46J-01 19 53210100 53210100 T C ZNF611 Missense_Mutation p.M70V 0.13 tolerated(1) benign(0.002) TCGA-58-A46J-01 19 8431177 8431177 C G ANGPTL4 Missense_Mutation p.P174R 0.08 tolerated(0.48) benign(0.393) TCGA-58-A46J-01 1 114189194 114189194 C G MAGI3 Missense_Mutation p.I695M 0.19 tolerated(0.24) benign(0.025) TCGA-58-A46J-01 1 12856083 12856083 A - PRAMEF1 Frame_Shift_Del p.T455Pfs*41 0.08 TCGA-58-A46J-01 1 147380085 147380085 G A GJA8 Translation_Start_Site p.M1? 0.10 deleterious(0) probably_damaging(0.999) TCGA-58-A46J-01 1 153580060 153580060 C A S100A16 Missense_Mutation p.G88C 0.17 tolerated(0.06) benign(0.014) TCGA-58-A46J-01 1 154544241 154544241 C T CHRNB2 Silent p.T314T 0.13 TCGA-58-A46J-01 1 160277034 160277034 C A COPA Silent p.A407A 0.16 TCGA-58-A46J-01 1 17029210 17029210 C T ESPNP RNA 0.05 TCGA-58-A46J-01 1 18554475 18554475 G A IGSF21 Missense_Mutation p.G52R 0.14 deleterious(0) probably_damaging(1) TCGA-58-A46J-01 1 192628641 192628641 C A RGS13 Missense_Mutation p.N156K 0.24 tolerated(0.07) benign(0.001) TCGA-58-A46J-01 1 193038254 193038254 G T TROVE2 Missense_Mutation p.V24L 0.16 tolerated(0.13) benign(0.027) TCGA-58-A46J-01 1 196309540 196309540 T A KCNT2 Missense_Mutation p.S572C 0.18 deleterious(0.02) benign(0.285) TCGA-58-A46J-01 1 196920118 196920118 A T CFHR2 Silent p.V130V 0.15 TCGA-58-A46J-01 1 204379546 204379546 G A PPP1R15B Missense_Mutation p.L332F 0.17 deleterious(0.01) probably_damaging(0.987) TCGA-58-A46J-01 1 207273252 207273252 A T C4BPB Missense_Mutation p.E246V 0.14 deleterious(0.03) unknown(0) TCGA-58-A46J-01 1 210194391 210194391 C T SYT14 Silent p.S123S 0.27 TCGA-58-A46J-01 1 2103545 2103545 G T PRKCZ Silent p.G371G 0.21 TCGA-58-A46J-01 1 216496894 216496894 C A USH2A Missense_Mutation p.G491V 0.12 probably_damaging(0.98) TCGA-58-A46J-01 1 220088667 220088667 G T SLC30A10 3'UTR 0.15 TCGA-58-A46J-01 1 237659974 237659974 G - RYR2 Frame_Shift_Del p.G710Afs*32 0.10 TCGA-58-A46J-01 1 241946650 241946650 T C WDR64 Missense_Mutation p.V881A 0.15 tolerated(0.29) benign(0.314) TCGA-58-A46J-01 1 248128914 248128914 C A OR2AK2 Missense_Mutation p.P94H 0.14 deleterious(0) probably_damaging(0.977) TCGA-58-A46J-01 1 248525762 248525762 C A OR2T4 Missense_Mutation p.P294T 0.15 deleterious(0) probably_damaging(0.982) TCGA-58-A46J-01 1 26393991 26393991 G T TRIM63 5'UTR 0.11 TCGA-58-A46J-01 1 27089592 27089593 - A ARID1A Nonsense_Mutation p.Y850* 0.10 TCGA-58-A46J-01 1 27278850 27278850 G - C1orf172 Frame_Shift_Del p.R8Afs*240 0.25 TCGA-58-A46J-01 1 46501272 46501272 C G MAST2 Missense_Mutation p.S1644C 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.572) TCGA-58-A46J-01 1 78958691 78958691 C A PTGFR Missense_Mutation p.A88E 0.17 deleterious(0.01) probably_damaging(0.992) TCGA-58-A46J-01 1 89846162 89846162 C T GBP6 Silent p.L281L 0.16 TCGA-58-A46J-01 1 92433721 92433721 C A BRDT Missense_Mutation p.L117I 0.18 tolerated(0.08) possibly_damaging(0.468) TCGA-58-A46J-01 20 21492993 21492993 C A NKX2-2 Missense_Mutation p.K130N 0.13 deleterious(0) probably_damaging(0.969) TCGA-58-A46J-01 20 58514404 58514404 C A PPP1R3D Missense_Mutation p.V195L 0.15 deleterious(0) probably_damaging(0.999) TCGA-58-A46J-01 20 61467619 61467619 C T COL9A3 Silent p.P494P 0.15 TCGA-58-A46J-01 20 8678284 8678284 G T PLCB1 Missense_Mutation p.A341S 0.18 tolerated(1) benign(0.089) TCGA-58-A46J-01 21 19670145 19670145 T A TMPRSS15 Missense_Mutation p.S723C 0.14 deleterious(0.03) possibly_damaging(0.897) TCGA-58-A46J-01 22 19839523 19839523 T C C22orf29 Missense_Mutation p.S88G 0.22 tolerated(1) benign(0.001) TCGA-58-A46J-01 22 30414045 30414045 G A MTMR3 Missense_Mutation p.D602N 0.24 deleterious(0.05) possibly_damaging(0.753) TCGA-58-A46J-01 22 50882340 50882340 G C PPP6R2 Silent p.A849A 0.29 TCGA-58-A46J-01 2 109388295 109388295 G T RANBP2 Missense_Mutation p.R2663I 0.21 deleterious(0.01) probably_damaging(0.927) TCGA-58-A46J-01 2 125504872 125504872 C A CNTNAP5 Missense_Mutation p.P714H 0.15 tolerated(0.31) benign(0.002) TCGA-58-A46J-01 2 144245031 144245031 C A ARHGAP15 Missense_Mutation p.L265M 0.08 tolerated(0.24) benign(0.046) TCGA-58-A46J-01 2 145147555 145147555 A T ZEB2 Missense_Mutation p.F1036L 0.18 deleterious(0) possibly_damaging(0.814) TCGA-58-A46J-01 2 158177940 158177940 G A ERMN Missense_Mutation p.S246F 0.13 deleterious(0.03) probably_damaging(0.986) TCGA-58-A46J-01 2 170038095 170038095 T G LRP2 Silent p.A3344A 0.18 TCGA-58-A46J-01 2 179456552 179456552 C G TTN Missense_Mutation p.W19998C 0.18 TCGA-58-A46J-01 2 196578262 196578262 C A SLC39A10 Missense_Mutation p.L561I 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-58-A46J-01 2 20870322 20870322 C A GDF7 Silent p.R164R 0.20 TCGA-58-A46J-01 2 218938580 218938580 C T RUFY4 Missense_Mutation p.P191L 0.08 tolerated(0.07) possibly_damaging(0.759) TCGA-58-A46J-01 2 242051676 242051676 G A PASK Missense_Mutation p.P1178L 0.14 deleterious(0) probably_damaging(0.999) TCGA-58-A46J-01 2 31167734 31167734 C T GALNT14 Missense_Mutation p.E278K 0.14 tolerated(0.39) benign(0.043) TCGA-58-A46J-01 2 33952796 33952796 C T AC009499.1 Intron 0.18 TCGA-58-A46J-01 2 38977249 38977249 G A SRSF7 Missense_Mutation p.T39I 0.14 tolerated(0.11) benign(0.246) TCGA-58-A46J-01 2 43768419 43768419 A G THADA Missense_Mutation p.M1048T 0.20 deleterious(0.01) possibly_damaging(0.507) TCGA-58-A46J-01 2 74906446 74906446 C - SEMA4F Frame_Shift_Del p.P563Lfs*9 0.14 TCGA-58-A46J-01 2 79348719 79348719 C A REG1A Silent p.A32A 0.15 TCGA-58-A46J-01 3 101390091 101390091 C G ZBTB11 Missense_Mutation p.E221Q 0.21 deleterious(0) probably_damaging(1) TCGA-58-A46J-01 3 124457061 124457061 A G UMPS Silent p.G319G 0.09 TCGA-58-A46J-01 3 128712039 128712039 G T KIAA1257 Missense_Mutation p.L37M 0.14 tolerated(0.07) probably_damaging(0.949) TCGA-58-A46J-01 3 155203360 155203360 C - PLCH1 Frame_Shift_Del p.G928Afs*15 0.24 TCGA-58-A46J-01 3 155303876 155303876 C G PLCH1 Missense_Mutation p.R181T 0.26 deleterious(0.05) probably_damaging(0.984) TCGA-58-A46J-01 3 164905739 164905739 A T SLITRK3 Silent p.L960L 0.14 TCGA-58-A46J-01 3 165547593 165547593 G C BCHE Missense_Mutation p.P410R 0.17 tolerated(0.21) benign(0.018) TCGA-58-A46J-01 3 166960367 166960367 C A ZBBX Silent p.L773L 0.25 TCGA-58-A46J-01 3 181430519 181430519 A G SOX2 Missense_Mutation p.K124R 0.21 deleterious(0) possibly_damaging(0.588) TCGA-58-A46J-01 3 186953852 186953852 C A MASP1 Missense_Mutation p.D603Y 0.15 deleterious(0) probably_damaging(0.935) TCGA-58-A46J-01 3 195009874 195009874 G A ACAP2 Missense_Mutation p.A717V 0.32 tolerated(0.07) benign(0.039) TCGA-58-A46J-01 3 195013051 195013051 C G ACAP2 Silent p.V632V 0.22 TCGA-58-A46J-01 3 195594784 195594784 C T TNK2 Silent p.P858P 0.14 TCGA-58-A46J-01 3 46450494 46450494 C A CCRL2 Missense_Mutation p.S320R 0.25 tolerated(1) benign(0) TCGA-58-A46J-01 3 48668506 48668506 C A SLC26A6 Missense_Mutation p.A352S 0.22 deleterious(0.02) probably_damaging(0.973) TCGA-58-A46J-01 3 73434021 73434021 C T PDZRN3 Missense_Mutation p.E566K 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-58-A46J-01 4 106157749 106157749 C T TET2 Nonsense_Mutation p.Q884* 0.27 TCGA-58-A46J-01 4 115997240 115997240 G T NDST4 Missense_Mutation p.T318K 0.21 deleterious(0.01) probably_damaging(0.991) TCGA-58-A46J-01 4 126336038 126336038 G T FAT4 Splice_Site p.X1974_splice 0.31 TCGA-58-A46J-01 4 155157002 155157002 A G DCHS2 Silent p.N2479N 0.10 TCGA-58-A46J-01 4 155254561 155254561 G C DCHS2 Silent p.R434R 0.20 TCGA-58-A46J-01 4 66286239 66286239 T G EPHA5 Missense_Mutation p.N483H 0.22 tolerated(0.28) possibly_damaging(0.776) TCGA-58-A46J-01 5 13870967 13870967 T C DNAH5 Missense_Mutation p.K1248R 0.12 benign(0.292) TCGA-58-A46J-01 5 35065937 35065937 A G PRLR Missense_Mutation p.Y375H 0.13 tolerated(0.89) benign(0) TCGA-58-A46J-01 5 43506259 43506259 C G C5orf34 Missense_Mutation p.E175Q 0.08 tolerated(0.43) possibly_damaging(0.897) TCGA-58-A46J-01 5 86685344 86685344 G C RASA1 Missense_Mutation p.Q1020H 0.18 deleterious(0.04) possibly_damaging(0.875) TCGA-58-A46J-01 6 105776882 105776882 C A PREP Missense_Mutation p.R345S 0.12 deleterious(0.03) benign(0.051) TCGA-58-A46J-01 6 110514421 110514421 G T CDC40 Missense_Mutation p.V76F 0.13 tolerated(0.06) benign(0.102) TCGA-58-A46J-01 6 123100878 123100878 C T FABP7 5'UTR 0.26 TCGA-58-A46J-01 6 131190974 131190974 T A EPB41L2 Missense_Mutation p.E779V 0.11 tolerated(0.05) probably_damaging(0.977) TCGA-58-A46J-01 6 152382188 152382188 C A ESR1 Missense_Mutation p.S433Y 0.11 deleterious(0) possibly_damaging(0.864) TCGA-58-A46J-01 6 152420159 152420159 G A ESR1 3'UTR 0.42 TCGA-58-A46J-01 6 152599285 152599285 C A SYNE1 Missense_Mutation p.R6171M 0.14 benign(0.002) TCGA-58-A46J-01 6 152746622 152746622 C T SYNE1 Missense_Mutation p.E1721K 0.14 benign(0.004) TCGA-58-A46J-01 6 152774625 152774625 A T SYNE1 Intron 0.16 TCGA-58-A46J-01 6 158074606 158074606 G T ZDHHC14 Missense_Mutation p.A339S 0.11 tolerated(0.7) benign(0.001) TCGA-58-A46J-01 6 21595988 21595988 T G SOX4 Missense_Mutation p.L408R 0.14 deleterious(0) unknown(0) TCGA-58-A46J-01 6 25652645 25652645 G A SCGN Missense_Mutation p.R5Q 0.16 tolerated(0.29) benign(0.048) TCGA-58-A46J-01 6 36651906 36651906 C T CDKN1A Nonsense_Mutation p.Q10* 0.27 TCGA-58-A46J-01 6 55406579 55406579 C A HMGCLL1 Missense_Mutation p.G112V 0.24 deleterious(0) probably_damaging(1) TCGA-58-A46J-01 6 73713638 73713638 C G KCNQ5 Missense_Mutation p.L136V 0.24 deleterious(0) possibly_damaging(0.517) TCGA-58-A46J-01 7 100732081 100732081 T - TRIM56 Frame_Shift_Del p.F497Sfs*35 0.09 TCGA-58-A46J-01 7 119915258 119915258 C T KCND2 Missense_Mutation p.T191M 0.15 deleterious(0.03) probably_damaging(0.994) TCGA-58-A46J-01 7 126173108 126173108 A G GRM8 Silent p.T776T 0.17 TCGA-58-A46J-01 7 140301990 140301990 C A DENND2A Nonsense_Mutation p.G70* 0.19 TCGA-58-A46J-01 7 143956701 143956701 G A OR2A7 Silent p.S7S 0.04 TCGA-58-A46J-01 7 149986553 149986553 C T ACTR3C Missense_Mutation p.A95T 0.11 tolerated(0.11) benign(0.077) TCGA-58-A46J-01 7 150695717 150695717 G T NOS3 Silent p.R255R 0.22 TCGA-58-A46J-01 7 151815830 151815830 T C GALNT11 Missense_Mutation p.V507A 0.16 deleterious(0.01) benign(0.395) TCGA-58-A46J-01 7 4273028 4273028 G A SDK1 Missense_Mutation p.S1990N 0.15 deleterious(0) probably_damaging(0.976) TCGA-58-A46J-01 7 82784617 82784617 C A PCLO Missense_Mutation p.G447V 0.16 probably_damaging(0.979) TCGA-58-A46J-01 7 92844982 92844982 T G HEPACAM2 Silent p.P149P 0.20 TCGA-58-A46J-01 7 98547140 98547140 C T TRRAP Missense_Mutation p.A1623V 0.07 benign(0.035) TCGA-58-A46J-01 8 105361500 105361500 G T DCSTAMP Missense_Mutation p.W240C 0.08 tolerated(0.06) benign(0.002) TCGA-58-A46J-01 8 11189136 11189136 G T SLC35G5 Missense_Mutation p.G174V 0.10 tolerated(0.94) possibly_damaging(0.489) TCGA-58-A46J-01 8 113243775 113243775 C A CSMD3 Silent p.L3609L 0.10 TCGA-58-A46J-01 8 146067697 146067697 C A ZNF7 Missense_Mutation p.A402E 0.16 tolerated(1) benign(0.1) TCGA-58-A46J-01 8 17513552 17513552 C G MTUS1 Missense_Mutation p.E976D 0.15 deleterious(0.04) probably_damaging(0.982) TCGA-58-A46J-01 8 25317956 25317956 G T CDCA2 Nonsense_Mutation p.E40* 0.13 TCGA-58-A46J-01 8 30705740 30705740 G T TEX15 Missense_Mutation p.T265N 0.20 tolerated(0.07) benign(0.158) TCGA-58-A46J-01 8 37602297 37602297 C T ERLIN2 Intron 0.29 TCGA-58-A46J-01 8 41574523 41574523 T A ANK1 Missense_Mutation p.E484V 0.23 deleterious(0) possibly_damaging(0.716) TCGA-58-A46J-01 8 42176128 42176128 C G IKBKB Silent p.V433V 0.15 TCGA-58-A46J-01 8 57219237 57219237 T A SDR16C5 Silent p.T236T 0.12 TCGA-58-A46J-01 8 63492200 63492200 G - NKAIN3 Frame_Shift_Del p.T54Pfs*9 0.24 TCGA-58-A46J-01 8 74464184 74464184 T C STAU2 Intron 0.47 TCGA-58-A46J-01 8 76471108 76471108 A T HNF4G Missense_Mutation p.Y310F 0.43 deleterious(0.01) probably_damaging(0.986) TCGA-58-A46J-01 8 95188785 95188785 C T CDH17 Silent p.R136R 0.11 TCGA-58-A46J-01 9 120176838 120176838 G T ASTN2 Missense_Mutation p.L127M 0.26 deleterious_low_confidence(0.03) unknown(0) TCGA-58-A46J-01 9 134312046 134312046 G A PRRC2B Silent p.P111P 0.20 TCGA-58-A46J-01 9 21141356 21141356 G A IFNW1 Nonsense_Mutation p.Q72* 0.13 TCGA-58-A46J-01 9 8436650 8436650 G A PTPRD Missense_Mutation p.A1343V 0.21 deleterious(0.02) benign(0.015) TCGA-58-A46J-01 X 100608229 100608229 G T BTK Missense_Mutation p.L621M 0.34 tolerated(0.12) benign(0.066) TCGA-58-A46J-01 X 13607680 13607680 G A EGFL6 Missense_Mutation p.R27K 0.24 tolerated(0.08) benign(0.009) TCGA-58-A46J-01 X 14627226 14627226 T C GLRA2 Missense_Mutation p.W277R 0.28 deleterious(0) probably_damaging(0.994) TCGA-58-A46J-01 X 15527528 15527528 C A BMX Missense_Mutation p.T72K 0.56 tolerated(0.09) probably_damaging(0.909) TCGA-58-A46J-01 X 22112127 22112127 G T PHEX Missense_Mutation p.M253I 0.30 deleterious(0.02) probably_damaging(0.985) TCGA-58-A46J-01 X 22112128 22112128 G T PHEX Missense_Mutation p.V254L 0.30 tolerated(0.09) probably_damaging(0.996) TCGA-58-A46J-01 X 38525539 38525539 T C TSPAN7 Silent p.R82R 0.11 TCGA-58-A46J-01 X 47099251 47099251 G A USP11 Silent p.R203R 0.07 TCGA-58-A46J-01 X 73963297 73963297 C A KIAA2022 Missense_Mutation p.K365N 0.31 deleterious(0) probably_damaging(0.999) TCGA-58-A46K-01 10 102672746 102672746 G C FAM178A 5'UTR 0.44 TCGA-58-A46K-01 10 115531822 115531822 C G PLEKHS1 Missense_Mutation p.L210V 0.12 tolerated(0.69) benign(0.16) TCGA-58-A46K-01 10 121190948 121190948 G T GRK5 Missense_Mutation p.R216L 0.27 deleterious(0) possibly_damaging(0.81) TCGA-58-A46K-01 10 28899693 28899693 C T WAC Missense_Mutation p.P411S 0.27 deleterious(0.02) probably_damaging(0.998) TCGA-58-A46K-01 10 90773985 90773985 C G FAS Missense_Mutation p.I262M 0.25 deleterious(0) probably_damaging(0.999) TCGA-58-A46K-01 11 1216379 1216379 C T MUC5AC RNA 0.24 TCGA-58-A46K-01 11 124189603 124189603 G C OR8D2 Nonsense_Mutation p.S164* 0.25 TCGA-58-A46K-01 11 1265393 1265393 C G MUC5B Missense_Mutation p.S2428C 0.21 unknown(0) TCGA-58-A46K-01 11 128851375 128851375 G T ARHGAP32 Missense_Mutation p.F558L 0.12 deleterious(0) possibly_damaging(0.493) TCGA-58-A46K-01 11 12951837 12951837 G A TEAD1 Missense_Mutation p.M377I 0.16 deleterious(0) benign(0.401) TCGA-58-A46K-01 11 17523056 17523056 C A USH1C Missense_Mutation p.K751N 0.32 deleterious_low_confidence(0) possibly_damaging(0.868) TCGA-58-A46K-01 11 32636489 32636489 C G CCDC73 Splice_Site p.X459_splice 0.06 TCGA-58-A46K-01 11 32975515 32975515 T A QSER1 Nonsense_Mutation p.Y1301* 0.13 TCGA-58-A46K-01 11 3429992 3429992 T A TSSC2 RNA 0.15 TCGA-58-A46K-01 11 40137319 40137319 C A LRRC4C Missense_Mutation p.R175L 0.27 tolerated(0.07) possibly_damaging(0.586) TCGA-58-A46K-01 11 55036773 55036773 G C TRIM48 Missense_Mutation p.G212R 0.11 tolerated(0.95) benign(0.018) TCGA-58-A46K-01 11 66613490 66613490 C G RCE1 Missense_Mutation p.P305R 0.07 deleterious(0) possibly_damaging(0.903) TCGA-58-A46K-01 11 67120164 67120164 G A POLD4 Silent p.C99C 0.31 TCGA-58-A46K-01 11 89914820 89914820 G C NAALAD2 Missense_Mutation p.E631Q 0.11 tolerated(0.25) benign(0.2) TCGA-58-A46K-01 12 100795558 100795558 C A SLC17A8 Missense_Mutation p.S227Y 0.24 deleterious(0) probably_damaging(0.985) TCGA-58-A46K-01 12 103699968 103699968 C T C12orf42 Missense_Mutation p.E139K 0.22 tolerated(0.1) benign(0.347) TCGA-58-A46K-01 12 118693424 118693424 C T TAOK3 5'UTR 0.26 TCGA-58-A46K-01 12 21654836 21654836 C A GOLT1B 5'UTR 0.20 TCGA-58-A46K-01 12 50855059 50855059 G A LARP4 Silent p.Q421Q 0.24 TCGA-58-A46K-01 12 67072769 67072769 C T GRIP1 5'Flank 0.36 TCGA-58-A46K-01 12 6967768 6967768 G A USP5 Missense_Mutation p.D349N 0.27 deleterious(0.01) possibly_damaging(0.574) TCGA-58-A46K-01 12 8687389 8687389 C A CLEC4E Nonsense_Mutation p.E169* 0.35 TCGA-58-A46K-01 13 103718220 103718220 T C SLC10A2 Intron 0.34 TCGA-58-A46K-01 13 25745183 25745183 C T AMER2 Missense_Mutation p.R192Q 0.50 deleterious(0.01) probably_damaging(0.979) TCGA-58-A46K-01 14 52955104 52955104 T C TXNDC16 Missense_Mutation p.N362S 0.51 tolerated(0.14) benign(0.001) TCGA-58-A46K-01 14 58711650 58711650 C G PSMA3 Missense_Mutation p.I4M 0.07 deleterious(0.03) benign(0.023) TCGA-58-A46K-01 14 63246457 63246457 G C KCNH5 Missense_Mutation p.L670V 0.05 deleterious(0.01) possibly_damaging(0.587) TCGA-58-A46K-01 14 65390814 65390814 G C CHURC1-FNTB Missense_Mutation p.E50Q 0.07 tolerated_low_confidence(0.09) benign(0.033) TCGA-58-A46K-01 14 90759096 90759096 C T NRDE2 Missense_Mutation p.R596H 0.06 deleterious(0.02) probably_damaging(0.911) TCGA-58-A46K-01 14 93199056 93199056 C A LGMN Nonsense_Mutation p.G26* 0.09 TCGA-58-A46K-01 15 102346212 102346212 G A OR4F6 Missense_Mutation p.C97Y 0.44 deleterious_low_confidence(0) probably_damaging(1) TCGA-58-A46K-01 15 28901009 28901009 C G HERC2P9 RNA 0.09 TCGA-58-A46K-01 15 28901050 28901050 C T HERC2P9 RNA 0.11 TCGA-58-A46K-01 15 38990465 38990465 T C C15orf53 Silent p.L87L 0.19 TCGA-58-A46K-01 15 40914646 40914646 G C CASC5 Missense_Mutation p.Q754H 0.21 tolerated(0.12) benign(0.013) TCGA-58-A46K-01 15 42178190 42178190 C A SPTBN5 Silent p.L421L 0.33 TCGA-58-A46K-01 15 63862753 63862753 C G USP3 Missense_Mutation p.L295V 0.32 tolerated(0.3) benign(0.004) TCGA-58-A46K-01 15 81638710 81638710 A G TMC3 Missense_Mutation p.I423T 0.30 tolerated(0.6) benign(0.001) TCGA-58-A46K-01 16 11035695 11035695 G A DEXI Silent p.L56L 0.27 TCGA-58-A46K-01 16 1129313 1129313 C T SSTR5 Missense_Mutation p.R149C 0.08 deleterious(0) probably_damaging(0.912) TCGA-58-A46K-01 16 30939808 30939808 G A FBXL19 Silent p.R236R 0.19 TCGA-58-A46K-01 16 48249144 48249144 A G ABCC11 Missense_Mutation p.Y355H 0.15 deleterious(0) probably_damaging(0.999) TCGA-58-A46K-01 16 72153136 72153136 C T PMFBP1 3'UTR 0.24 TCGA-58-A46K-01 17 10448705 10448705 T C MYH2 Missense_Mutation p.I155V 0.03 deleterious(0.03) possibly_damaging(0.449) TCGA-58-A46K-01 17 19646026 19646026 C G ALDH3A1 Intron 0.55 TCGA-58-A46K-01 17 39675108 39675108 C T KRT15 5'UTR 0.57 TCGA-58-A46K-01 17 4084552 4084552 C A ANKFY1 Missense_Mutation p.R788L 0.53 deleterious(0) probably_damaging(0.985) TCGA-58-A46K-01 17 47230202 47230202 A G B4GALNT2 Missense_Mutation p.N192D 0.20 deleterious(0.03) probably_damaging(0.971) TCGA-58-A46K-01 17 48703681 48703681 G C CACNA1G Missense_Mutation p.E2235Q 0.40 tolerated_low_confidence(0.46) benign(0.002) TCGA-58-A46K-01 17 63533916 63533916 G T AXIN2 Nonsense_Mutation p.S413* 0.17 TCGA-58-A46K-01 17 65132304 65132304 G C HELZ Missense_Mutation p.F988L 0.14 deleterious(0) probably_damaging(0.992) TCGA-58-A46K-01 17 65715799 65715799 C T NOL11 Nonsense_Mutation p.Q51* 0.39 TCGA-58-A46K-01 17 7578457 7578457 C A TP53 Missense_Mutation p.R158L 0.57 deleterious(0) probably_damaging(0.986) TCGA-58-A46K-01 17 7696499 7696499 G C DNAH2 Silent p.T2515T 0.53 TCGA-58-A46K-01 18 28923927 28923927 C T DSG1 Silent p.N620N 0.42 TCGA-58-A46K-01 18 57115291 57115291 G A CCBE1 Silent p.I233I 0.29 TCGA-58-A46K-01 18 736826 736826 C T YES1 Missense_Mutation p.E425K 0.06 deleterious(0.03) benign(0.017) TCGA-58-A46K-01 18 736913 736913 C T YES1 Missense_Mutation p.D396N 0.09 deleterious(0) possibly_damaging(0.906) TCGA-58-A46K-01 18 74639139 74639139 G A ZNF236 Splice_Site p.X1389_splice 0.28 TCGA-58-A46K-01 19 13873738 13873738 G C CCDC130 Silent p.P349P 0.31 TCGA-58-A46K-01 19 36317406 36317406 G A NPHS1 3'UTR 0.17 TCGA-58-A46K-01 19 49230089 49230089 C T RASIP1 Missense_Mutation p.E694K 0.19 deleterious(0) possibly_damaging(0.867) TCGA-58-A46K-01 19 49940018 49940018 G C SLC17A7 Missense_Mutation p.L35V 0.09 deleterious(0.02) benign(0.14) TCGA-58-A46K-01 19 52147276 52147276 C T SIGLEC14 Silent p.L256L 0.48 TCGA-58-A46K-01 19 53086149 53086149 C G ZNF701 Missense_Mutation p.F345L 0.21 deleterious(0.01) probably_damaging(0.963) TCGA-58-A46K-01 19 58004665 58004665 T C ZNF419 Missense_Mutation p.F248S 0.10 tolerated(0.33) benign(0.037) TCGA-58-A46K-01 19 6833256 6833256 G C VAV1 Missense_Mutation p.E524Q 0.24 tolerated(0.1) possibly_damaging(0.694) TCGA-58-A46K-01 19 7523507 7523507 A T ARHGEF18 Missense_Mutation p.Y576F 0.28 deleterious(0) probably_damaging(0.999) TCGA-58-A46K-01 1 145527637 145527637 A G ITGA10 Missense_Mutation p.D26G 0.12 deleterious(0) probably_damaging(0.938) TCGA-58-A46K-01 1 150526936 150526936 C T ADAMTSL4 Silent p.F409F 0.33 TCGA-58-A46K-01 1 153973329 153973329 T C NUP210L Intron 0.25 TCGA-58-A46K-01 1 156823860 156823860 C T INSRR Silent p.T107T 0.33 TCGA-58-A46K-01 1 158262062 158262062 G A CD1C Missense_Mutation p.V173I 0.29 tolerated(1) benign(0) TCGA-58-A46K-01 1 17084487 17084487 C A MST1L RNA 0.06 TCGA-58-A46K-01 1 197522035 197522035 A T DENND1B 3'UTR 0.22 TCGA-58-A46K-01 1 197522036 197522036 C A DENND1B 3'UTR 0.21 TCGA-58-A46K-01 1 197522038 197522038 T A DENND1B 3'UTR 0.20 TCGA-58-A46K-01 1 203466122 203466122 C T OPTC Silent p.L83L 0.26 TCGA-58-A46K-01 1 205238284 205238284 G T TMCC2 Silent p.L318L 0.24 TCGA-58-A46K-01 1 205238428 205238428 G C TMCC2 Missense_Mutation p.Q366H 0.21 tolerated(0.33) benign(0.161) TCGA-58-A46K-01 1 205238762 205238762 G A TMCC2 Missense_Mutation p.E478K 0.26 deleterious(0.02) possibly_damaging(0.673) TCGA-58-A46K-01 1 207851610 207851610 C A CR1L Missense_Mutation p.F115L 0.23 tolerated(0.12) benign(0.315) TCGA-58-A46K-01 1 209806436 209806436 T C LAMB3 Missense_Mutation p.T203A 0.25 deleterious(0.04) benign(0.314) TCGA-58-A46K-01 1 216251555 216251555 C T USH2A Silent p.V1816V 0.04 TCGA-58-A46K-01 1 231488487 231488487 C G SPRTN Missense_Mutation p.L284V 0.17 tolerated(0.5) benign(0.004) TCGA-58-A46K-01 1 247769236 247769236 G T OR2G3 Missense_Mutation p.D117Y 0.04 deleterious(0) benign(0.001) TCGA-58-A46K-01 1 248263082 248263082 G C OR2L13 Missense_Mutation p.M135I 0.04 deleterious(0.04) benign(0.153) TCGA-58-A46K-01 1 248366705 248366705 C G OR2M3 Missense_Mutation p.C112W 0.06 deleterious(0.01) possibly_damaging(0.897) TCGA-58-A46K-01 1 248366947 248366947 C A OR2M3 Nonsense_Mutation p.S193* 0.28 TCGA-58-A46K-01 1 38095307 38095307 G T RSPO1 Silent p.A9A 0.40 TCGA-58-A46K-01 1 40208891 40208891 G A PPIE Missense_Mutation p.E69K 0.14 tolerated(0.06) probably_damaging(0.998) TCGA-58-A46K-01 1 40208897 40208897 G A PPIE Missense_Mutation p.E71K 0.15 deleterious(0) probably_damaging(0.998) TCGA-58-A46K-01 1 46662492 46662492 G A POMGNT1 Missense_Mutation p.R89W 0.06 benign(0.28) TCGA-58-A46K-01 1 75038351 75038351 C T C1orf173 Missense_Mutation p.E1015K 0.26 tolerated(0.11) benign(0.079) TCGA-58-A46K-01 1 90472966 90472966 C G ZNF326 Missense_Mutation p.S91C 0.03 deleterious(0) probably_damaging(0.981) TCGA-58-A46K-01 20 18429714 18429714 C A DZANK1 Splice_Site p.X182_splice 0.29 TCGA-58-A46K-01 20 47691854 47691854 G A CSE1L Splice_Site p.X378_splice 0.22 TCGA-58-A46K-01 21 41414434 41414434 C T DSCAM Silent p.G1850G 0.37 TCGA-58-A46K-01 22 21363149 21363149 C G AC002472.1 5'Flank 0.14 TCGA-58-A46K-01 22 36702514 36702514 C T MYH9 Silent p.L661L 0.15 TCGA-58-A46K-01 22 40660725 40660725 A G TNRC6B Missense_Mutation p.Y164C 0.31 deleterious(0) possibly_damaging(0.88) TCGA-58-A46K-01 22 41625539 41625539 C G L3MBTL2 Intron 0.29 TCGA-58-A46K-01 22 41625578 41625578 C T L3MBTL2 Silent p.L641L 0.37 TCGA-58-A46K-01 22 42463824 42463824 C A NAGA Missense_Mutation p.R90L 0.12 deleterious(0.02) benign(0.047) TCGA-58-A46K-01 2 127944919 127944919 A C CYP27C1 Silent p.A349A 0.29 TCGA-58-A46K-01 2 157367351 157367351 G A GPD2 Silent p.G106G 0.05 TCGA-58-A46K-01 2 160676425 160676425 G C LY75-CD302 Missense_Mutation p.S1322C 0.19 deleterious(0.01) probably_damaging(0.987) TCGA-58-A46K-01 2 178098960 178098960 C T NFE2L2 Missense_Mutation p.D29N 0.15 deleterious(0) probably_damaging(1) TCGA-58-A46K-01 2 178402872 178402872 C G AGPS Silent p.V642V 0.16 TCGA-58-A46K-01 2 179472636 179472636 G A TTN Silent p.V17626V 0.04 TCGA-58-A46K-01 2 179476399 179476399 G T TTN Missense_Mutation p.P16853T 0.34 TCGA-58-A46K-01 2 21234315 21234315 T A APOB Missense_Mutation p.T1809S 0.26 benign(0.368) TCGA-58-A46K-01 2 215440544 215440544 G - VWC2L Frame_Shift_Del 0.26 TCGA-58-A46K-01 2 241702611 241702611 T C KIF1A Missense_Mutation p.I641V 0.18 tolerated(0.16) benign(0.023) TCGA-58-A46K-01 2 27355767 27355767 C G PREB Missense_Mutation p.E191Q 0.23 tolerated(0.15) possibly_damaging(0.707) TCGA-58-A46K-01 2 29917793 29917793 C T ALK Missense_Mutation p.R292H 0.25 tolerated_low_confidence(0.27) benign(0.024) TCGA-58-A46K-01 2 70504591 70504591 G C PCYOX1 3'UTR 0.09 TCGA-58-A46K-01 2 80096981 80096981 G C CTNNA2 Missense_Mutation p.E169Q 0.08 tolerated(0.97) benign(0.002) TCGA-58-A46K-01 2 96945279 96945279 G C SNRNP200 Missense_Mutation p.I1681M 0.25 deleterious(0.05) probably_damaging(0.949) TCGA-58-A46K-01 3 101572535 101572535 G A NFKBIZ Missense_Mutation p.E389K 0.23 deleterious(0.04) benign(0.001) TCGA-58-A46K-01 3 108330050 108330050 T C DZIP3 Silent p.D44D 0.10 TCGA-58-A46K-01 3 108698365 108698365 A T MORC1 Nonsense_Mutation p.L825* 0.29 TCGA-58-A46K-01 3 109046588 109046588 A G DPPA4 3'UTR 0.31 TCGA-58-A46K-01 3 111681065 111681065 A T PHLDB2 Missense_Mutation p.S995C 0.30 deleterious(0) possibly_damaging(0.566) TCGA-58-A46K-01 3 126272206 126272206 G A C3orf22 Missense_Mutation p.H10Y 0.05 tolerated(0.67) possibly_damaging(0.607) TCGA-58-A46K-01 3 12858354 12858354 A T CAND2 Silent p.P641P 0.11 TCGA-58-A46K-01 3 129236361 129236361 A G IFT122 Silent p.E1156E 0.06 TCGA-58-A46K-01 3 130289853 130289853 G A COL6A6 Missense_Mutation p.D865N 0.09 tolerated(0.49) benign(0.006) TCGA-58-A46K-01 3 132441115 132441115 C G NPHP3 Missense_Mutation p.E29Q 0.12 tolerated(0.06) benign(0.073) TCGA-58-A46K-01 3 155520337 155520337 A C C3orf33 Missense_Mutation p.L10W 0.04 deleterious(0.04) possibly_damaging(0.789) TCGA-58-A46K-01 3 172835152 172835152 C G SPATA16 Missense_Mutation p.E124Q 0.03 deleterious(0) possibly_damaging(0.607) TCGA-58-A46K-01 3 172835212 172835212 C G SPATA16 Missense_Mutation p.D104H 0.04 deleterious(0.04) probably_damaging(0.934) TCGA-58-A46K-01 3 192516789 192516789 G A MB21D2 Missense_Mutation p.R288W 0.13 deleterious(0) probably_damaging(0.999) TCGA-58-A46K-01 3 49689534 49689534 G A BSN Missense_Mutation p.E849K 0.08 unknown(0) TCGA-58-A46K-01 3 5248955 5248955 G T EDEM1 Silent p.L445L 0.46 TCGA-58-A46K-01 4 149356856 149356856 T G NR3C2 Missense_Mutation p.N386T 0.29 deleterious_low_confidence(0) possibly_damaging(0.727) TCGA-58-A46K-01 4 16597373 16597373 C A LDB2 Missense_Mutation p.D121Y 0.13 deleterious(0) probably_damaging(0.972) TCGA-58-A46K-01 4 46263887 46263887 A G GABRA2 Intron 0.13 TCGA-58-A46K-01 4 6711296 6711296 C T MRFAP1L1 Missense_Mutation p.E21K 0.36 tolerated(0.05) possibly_damaging(0.81) TCGA-58-A46K-01 5 140553819 140553819 T C PCDHB7 Missense_Mutation p.L468P 0.27 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-58-A46K-01 5 140581385 140581385 C G PCDHB11 Missense_Mutation p.Q680E 0.06 tolerated_low_confidence(0.74) benign(0) TCGA-58-A46K-01 5 44310544 44310544 C T FGF10 Silent p.G138G 0.12 TCGA-58-A46K-01 5 82940316 82940316 G C HAPLN1 Missense_Mutation p.S214C 0.10 deleterious(0) probably_damaging(0.993) TCGA-58-A46K-01 5 88047780 88047780 G A MEF2C Silent p.V179V 0.35 TCGA-58-A46K-01 6 123545277 123545277 C G TRDN Splice_Site p.X659_splice 0.12 TCGA-58-A46K-01 6 152730700 152730700 A T SYNE1 Missense_Mutation p.F2125L 0.11 benign(0) TCGA-58-A46K-01 6 160209160 160209160 G A TCP1 Missense_Mutation p.S27L 0.11 deleterious(0.03) benign(0.054) TCGA-58-A46K-01 6 167719417 167719417 C T UNC93A Silent p.C285C 0.35 TCGA-58-A46K-01 6 168227254 168227254 G C MLLT4 5'Flank 0.08 TCGA-58-A46K-01 6 26188949 26188949 G A HIST1H4D 3'UTR 0.67 TCGA-58-A46K-01 6 27805747 27805747 T C HIST1H2AK Missense_Mutation p.H124R 0.05 tolerated_low_confidence(0.09) benign(0.005) TCGA-58-A46K-01 6 27858123 27858123 T A HIST1H3J 3'UTR 0.30 TCGA-58-A46K-01 6 27858158 27858158 G A HIST1H3J 3'UTR 0.30 TCGA-58-A46K-01 6 29323340 29323340 G A OR5V1 Silent p.F211F 0.25 TCGA-58-A46K-01 6 31107469 31107469 C A PSORS1C1 Silent p.A73A 0.70 TCGA-58-A46K-01 6 35387987 35387987 A G PPARD Missense_Mutation p.M72V 0.54 tolerated(0.73) benign(0.001) TCGA-58-A46K-01 6 43268966 43268966 G C SLC22A7 Silent p.R307R 0.27 TCGA-58-A46K-01 6 76744383 76744383 T C IMPG1 Silent p.G141G 0.06 TCGA-58-A46K-01 6 96651101 96651101 G T FUT9 Missense_Mutation p.A24S 0.24 tolerated(0.15) benign(0.02) TCGA-58-A46K-01 7 113518007 113518007 T G PPP1R3A Missense_Mutation p.D1047A 0.16 deleterious(0.04) benign(0.001) TCGA-58-A46K-01 7 1192816 1192816 C G ZFAND2A Missense_Mutation p.E109D 0.06 deleterious(0) probably_damaging(0.998) TCGA-58-A46K-01 7 134873188 134873188 C A WDR91 Silent p.G626G 0.30 TCGA-58-A46K-01 7 139715612 139715612 A G TBXAS1 Missense_Mutation p.H486R 0.15 deleterious(0) probably_damaging(0.996) TCGA-58-A46K-01 7 141721431 141721431 G C MGAM Missense_Mutation p.V202L 0.21 tolerated(0.11) benign(0.026) TCGA-58-A46K-01 7 149477364 149477364 G A SSPO RNA 0.50 TCGA-58-A46K-01 7 47897258 47897258 C T PKD1L1 Missense_Mutation p.S1512N 0.21 deleterious(0) probably_damaging(0.981) TCGA-58-A46K-01 7 6189313 6189313 G C USP42 Missense_Mutation p.V496L 0.12 deleterious(0.03) possibly_damaging(0.572) TCGA-58-A46K-01 7 66460464 66460464 G A SBDS 5'UTR 0.41 TCGA-58-A46K-01 7 81335053 81335053 C G HGF Missense_Mutation p.D592H 0.28 deleterious(0.02) benign(0.257) TCGA-58-A46K-01 7 90356107 90356107 G A CDK14 Missense_Mutation p.R99Q 0.05 tolerated(0.11) possibly_damaging(0.776) TCGA-58-A46K-01 8 145579261 145579261 C A FBXL6 Missense_Mutation p.R517L 0.43 deleterious(0) probably_damaging(0.967) TCGA-58-A46K-01 8 146033111 146033111 C T ZNF517 Silent p.F270F 0.58 TCGA-58-A46K-01 8 17100650 17100650 G A CNOT7 Silent p.F54F 0.06 TCGA-58-A46K-01 8 20004798 20004798 G T SLC18A1 Silent p.R479R 0.43 TCGA-58-A46K-01 8 25237844 25237844 G C DOCK5 Silent p.L1320L 0.27 TCGA-58-A46K-01 8 82630436 82630436 C A ZFAND1 Missense_Mutation p.D27Y 0.20 tolerated(0.19) benign(0.004) TCGA-58-A46K-01 9 100675807 100675807 C G C9orf156 Missense_Mutation p.L95F 0.42 deleterious(0.01) possibly_damaging(0.771) TCGA-58-A46K-01 9 135073941 135073941 C T NTNG2 Missense_Mutation p.R268W 0.10 deleterious(0) probably_damaging(0.987) TCGA-58-A46K-01 9 18777591 18777591 C G ADAMTSL1 Missense_Mutation p.P1122A 0.23 tolerated(0.43) benign(0) TCGA-58-A46K-01 9 33676514 33676514 A G PTENP1 RNA 0.54 TCGA-58-A46K-01 9 35736500 35736500 C A CREB3 Nonsense_Mutation p.S298* 0.54 TCGA-58-A46K-01 9 35736696 35736696 C T CREB3 Silent p.V363V 0.48 TCGA-58-A46K-01 9 740791 740791 G A KANK1 Splice_Site p.X1185_splice 0.46 TCGA-58-A46K-01 X 100617179 100617179 T A BTK Silent p.P190P 0.63 TCGA-58-A46K-01 X 115584264 115584264 C T SLC6A14 Silent p.F414F 0.33 TCGA-58-A46K-01 X 153051672 153051672 C G IDH3G Missense_Mutation p.E359Q 0.57 tolerated(0.2) benign(0.094) TCGA-58-A46K-01 X 2609942 2609942 G T CD99 Intron 0.29 TCGA-58-A46K-01 X 69177077 69177077 C T EDA Intron 0.73 TCGA-58-A46K-01 X 70642985 70642985 C T TAF1 Missense_Mutation p.R1511C 0.05 deleterious(0) probably_damaging(0.998) TCGA-58-A46K-01 X 73960344 73960344 C T KIAA2022 Missense_Mutation p.D1350N 0.54 tolerated(0.11) benign(0.004) TCGA-58-A46K-01 Y 15028471 15028471 A G DDX3Y Missense_Mutation p.I512V 0.36 tolerated(0.22) possibly_damaging(0.516) TCGA-58-A46L-01 10 120353592 120353592 C G PRLHR 3'UTR 0.28 TCGA-58-A46L-01 10 126714845 126714845 C A CTBP2 Missense_Mutation p.R495L 0.29 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-58-A46L-01 10 22022976 22022976 A G MLLT10 Missense_Mutation p.M926V 0.24 tolerated(0.45) benign(0) TCGA-58-A46L-01 10 26802517 26802517 G A APBB1IP Nonsense_Mutation p.W247* 0.19 TCGA-58-A46L-01 10 27450059 27450059 G C MASTL Missense_Mutation p.E167D 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-58-A46L-01 10 28413009 28413009 T C MPP7 Missense_Mutation p.N189S 0.27 deleterious(0) probably_damaging(0.999) TCGA-58-A46L-01 10 43701477 43701477 C T RASGEF1A Missense_Mutation p.G30R 0.28 tolerated(0.05) possibly_damaging(0.894) TCGA-58-A46L-01 10 46121932 46121932 C A ZFAND4 Nonsense_Mutation p.G447* 0.32 TCGA-58-A46L-01 10 49791109 49791109 C A ARHGAP22 Silent p.A41A 0.40 TCGA-58-A46L-01 10 54528027 54528027 G A MBL2 Missense_Mutation p.T206I 0.58 deleterious(0) benign(0.429) TCGA-58-A46L-01 10 5693311 5693311 T C ASB13 Missense_Mutation p.I83V 0.39 tolerated(0.17) benign(0.225) TCGA-58-A46L-01 10 71690248 71690248 G T COL13A1 Silent p.G530G 0.45 TCGA-58-A46L-01 11 121986642 121986642 A G BLID 5'UTR 0.40 TCGA-58-A46L-01 11 124120595 124120595 C T OR8G1 Missense_Mutation p.P58L 0.23 deleterious_low_confidence(0) possibly_damaging(0.527) TCGA-58-A46L-01 11 124742806 124742806 A C ROBO3 Missense_Mutation p.I453L 0.32 deleterious(0.02) probably_damaging(0.994) TCGA-58-A46L-01 11 124756414 124756414 C T ROBO4 Missense_Mutation p.V914M 0.30 deleterious(0) benign(0) TCGA-58-A46L-01 11 124949027 124949027 C A SLC37A2 Missense_Mutation p.L112I 0.26 tolerated(0.18) benign(0.187) TCGA-58-A46L-01 11 125781232 125781232 C T DDX25 Nonsense_Mutation p.Q217* 0.29 TCGA-58-A46L-01 11 22380973 22380973 C A SLC17A6 Missense_Mutation p.A158D 0.12 deleterious(0) probably_damaging(0.97) TCGA-58-A46L-01 11 22380974 22380974 C A SLC17A6 Silent p.A158A 0.15 TCGA-58-A46L-01 11 5011017 5011017 C A MMP26 Missense_Mutation p.P80H 0.14 deleterious(0) benign(0.371) TCGA-58-A46L-01 11 55762076 55762076 A G OR5F1 Missense_Mutation p.L9P 0.23 deleterious(0) benign(0.01) TCGA-58-A46L-01 11 5862293 5862293 T G OR52E6 Missense_Mutation p.N279H 0.30 deleterious(0) possibly_damaging(0.794) TCGA-58-A46L-01 11 65265623 65265623 C A MALAT1 RNA 0.31 TCGA-58-A46L-01 11 67191644 67191644 C T CARNS1 Missense_Mutation p.R809W 0.32 deleterious(0) possibly_damaging(0.863) TCGA-58-A46L-01 11 71806507 71806516 GTCTGGAAAC CTCT LRTOMT Intron 0.15 TCGA-58-A46L-01 11 73669375 73669375 G T DNAJB13 Missense_Mutation p.A28S 0.21 tolerated(0.06) probably_damaging(0.966) TCGA-58-A46L-01 11 73679393 73679393 C T DNAJB13 Missense_Mutation p.P204S 0.22 deleterious(0.02) possibly_damaging(0.566) TCGA-58-A46L-01 11 85418574 85418574 T A SYTL2 Silent p.P1005P 0.23 TCGA-58-A46L-01 12 133244980 133244980 C A POLE Missense_Mutation p.R712L 0.30 deleterious(0.02) possibly_damaging(0.564) TCGA-58-A46L-01 12 18656298 18656298 A C PIK3C2G Missense_Mutation p.T993P 0.34 tolerated(0.55) probably_damaging(1) TCGA-58-A46L-01 12 2786909 2786909 G A CACNA1C Missense_Mutation p.R1704H 0.41 deleterious(0.01) probably_damaging(0.993) TCGA-58-A46L-01 12 32135719 32135719 A G KIAA1551 Silent p.K610K 0.27 TCGA-58-A46L-01 12 44148991 44148991 G T PUS7L Missense_Mutation p.H20N 0.23 deleterious(0) probably_damaging(0.995) TCGA-58-A46L-01 12 49364250 49364250 C A WNT10B Silent p.A21A 0.33 TCGA-58-A46L-01 12 6128767 6128767 T C VWF Missense_Mutation p.S1273G 0.30 tolerated(0.07) benign(0.342) TCGA-58-A46L-01 12 66597523 66597523 C G IRAK3 Missense_Mutation p.R56G 0.33 deleterious(0) probably_damaging(1) TCGA-58-A46L-01 12 70932724 70932724 C A PTPRB Missense_Mutation p.R1950L 0.34 deleterious(0) possibly_damaging(0.634) TCGA-58-A46L-01 12 7802159 7802159 G A APOBEC1 Missense_Mutation p.S232F 0.26 tolerated_low_confidence(0.75) benign(0.001) TCGA-58-A46L-01 12 91347203 91347203 T C CCER1 3'UTR 0.20 TCGA-58-A46L-01 12 94243904 94243904 C T CRADD Missense_Mutation p.P153S 0.19 tolerated(0.36) probably_damaging(0.928) TCGA-58-A46L-01 13 111111217 111111217 C G COL4A2 Missense_Mutation p.P511R 0.22 probably_damaging(0.992) TCGA-58-A46L-01 13 113055480 113055480 T C SPACA7 Splice_Site p.X149_splice 0.27 TCGA-58-A46L-01 13 113086837 113086837 T A SPACA7 Splice_Site p.X175_splice 0.30 TCGA-58-A46L-01 13 19751681 19751681 C A TUBA3C Missense_Mutation p.G148W 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-58-A46L-01 13 32753819 32753819 G A FRY Missense_Mutation p.G960D 0.31 deleterious(0.01) possibly_damaging(0.536) TCGA-58-A46L-01 13 32912655 32912656 - T BRCA2 Frame_Shift_Ins p.L1390Ffs*13 0.14 TCGA-58-A46L-01 13 70370885 70370885 G T KLHL1 Missense_Mutation p.H542N 0.20 deleterious(0.02) probably_damaging(0.994) TCGA-58-A46L-01 13 70413177 70413177 G T KLHL1 Missense_Mutation p.P449T 0.35 deleterious(0.03) benign(0.36) TCGA-58-A46L-01 14 105622087 105622087 C G JAG2 Missense_Mutation p.E239Q 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-58-A46L-01 14 22038558 22038558 G C OR10G3 Missense_Mutation p.H106Q 0.35 deleterious(0) probably_damaging(0.964) TCGA-58-A46L-01 14 24842975 24842975 G T NFATC4 Missense_Mutation p.R608L 0.27 deleterious(0) probably_damaging(0.999) TCGA-58-A46L-01 14 36300702 36300702 G T BRMS1L Missense_Mutation p.D77Y 0.20 deleterious(0) possibly_damaging(0.877) TCGA-58-A46L-01 14 38679143 38679143 G T SSTR1 Silent p.V183V 0.26 TCGA-58-A46L-01 14 50101041 50101041 G T DNAAF2 Missense_Mutation p.P276Q 0.24 deleterious(0.04) probably_damaging(1) TCGA-58-A46L-01 14 64727413 64727413 C A ESR2 Missense_Mutation p.D236Y 0.26 deleterious(0.01) benign(0.421) TCGA-58-A46L-01 14 65235788 65235788 C G SPTB Missense_Mutation p.E1996Q 0.24 tolerated(0.16) benign(0.04) TCGA-58-A46L-01 14 74196580 74196580 C A ELMSAN1 Missense_Mutation p.A620S 0.26 tolerated(0.12) benign(0.241) TCGA-58-A46L-01 14 88477522 88477522 G A GPR65 Missense_Mutation p.D111N 0.26 deleterious(0.03) possibly_damaging(0.831) TCGA-58-A46L-01 14 89341444 89341444 C A TTC8 Silent p.I474I 0.17 TCGA-58-A46L-01 14 99879273 99879273 G A SETD3 Intron 0.05 TCGA-58-A46L-01 15 101024874 101024874 C A CERS3 Splice_Site p.X97_splice 0.59 TCGA-58-A46L-01 15 23006473 23006473 G A NIPA2 Silent p.D277D 0.25 TCGA-58-A46L-01 15 25425717 25425717 C A SNORD115-6 RNA 0.61 TCGA-58-A46L-01 15 60760276 60760276 T A NARG2 Missense_Mutation p.D131V 0.65 deleterious(0) possibly_damaging(0.488) TCGA-58-A46L-01 15 63935662 63935662 C G HERC1 Missense_Mutation p.D3758H 0.23 probably_damaging(1) TCGA-58-A46L-01 15 70345647 70345647 C A TLE3 Missense_Mutation p.W634C 0.60 deleterious(0) probably_damaging(1) TCGA-58-A46L-01 15 70345648 70345648 C A TLE3 Missense_Mutation p.W634L 0.60 deleterious(0.01) probably_damaging(1) TCGA-58-A46L-01 15 72642812 72642812 C G HEXA Intron 0.29 TCGA-58-A46L-01 15 78770680 78770680 A T IREB2 Nonsense_Mutation p.K413* 0.22 TCGA-58-A46L-01 15 83296056 83296056 C T CPEB1 Silent p.T26T 0.56 TCGA-58-A46L-01 15 91030224 91030224 G T IQGAP1 Missense_Mutation p.A1355S 0.57 tolerated(0.45) benign(0.001) TCGA-58-A46L-01 16 1820909 1820909 C A NME3 Missense_Mutation p.R122L 0.32 deleterious(0) probably_damaging(0.948) TCGA-58-A46L-01 16 20348658 20348658 G T UMOD Missense_Mutation p.H565Q 0.41 deleterious(0) probably_damaging(1) TCGA-58-A46L-01 16 22262512 22262512 G C EEF2K Missense_Mutation p.G163R 0.43 tolerated(0.3) benign(0.07) TCGA-58-A46L-01 16 30991413 30991413 G T SETD1A Missense_Mutation p.D1436Y 0.23 unknown(0) TCGA-58-A46L-01 16 31382995 31382995 G C ITGAX Missense_Mutation p.G684R 0.21 deleterious(0.04) probably_damaging(1) TCGA-58-A46L-01 16 31382996 31382996 G T ITGAX Missense_Mutation p.G684V 0.22 tolerated(0.07) probably_damaging(1) TCGA-58-A46L-01 16 70543213 70543213 T C COG4 Missense_Mutation p.K308R 0.48 tolerated(0.36) benign(0.03) TCGA-58-A46L-01 16 81324114 81324114 A C BCMO1 Missense_Mutation p.K526Q 0.04 tolerated_low_confidence(0.46) benign(0.002) TCGA-58-A46L-01 17 33680015 33680015 C T SLFN11 Missense_Mutation p.R689Q 0.25 tolerated(1) benign(0.002) TCGA-58-A46L-01 17 34072008 34072008 A T GAS2L2 Silent p.G836G 0.18 TCGA-58-A46L-01 17 42818806 42818806 C T DBF4B Silent p.S272S 0.26 TCGA-58-A46L-01 17 5322940 5322940 C A NUP88 Missense_Mutation p.G11C 0.32 deleterious(0) probably_damaging(0.921) TCGA-58-A46L-01 17 66938126 66938126 C A ABCA8 Missense_Mutation p.C17F 0.35 tolerated(0.4) benign(0.127) TCGA-58-A46L-01 17 67170770 67170770 G A ABCA10 Missense_Mutation p.S1009L 0.27 tolerated(0.23) benign(0.012) TCGA-58-A46L-01 17 67218789 67218789 A T ABCA10 Silent p.L28L 0.18 TCGA-58-A46L-01 17 6930303 6930303 C A BCL6B Missense_Mutation p.T407N 0.44 deleterious(0) probably_damaging(0.999) TCGA-58-A46L-01 17 74075629 74075629 C T ZACN Silent p.S69S 0.23 TCGA-58-A46L-01 17 74527060 74527060 C A CYGB Splice_Site p.X180_splice 0.21 TCGA-58-A46L-01 17 7579554 7579579 GCATCAAATCATCCATTGCTTGGGAC - TP53 Frame_Shift_Del p.S37Vfs*6 0.25 TCGA-58-A46L-01 17 7705279 7705279 G A DNAH2 Silent p.R2972R 0.42 TCGA-58-A46L-01 17 7976050 7976050 G C ALOX12B 3'UTR 0.31 TCGA-58-A46L-01 18 76754513 76754513 C A SALL3 Missense_Mutation p.A841D 0.57 deleterious(0) probably_damaging(0.96) TCGA-58-A46L-01 18 77733576 77733576 G A TXNL4A 3'UTR 0.33 TCGA-58-A46L-01 18 9257254 9257254 G A ANKRD12 Missense_Mutation p.S1330N 0.27 tolerated_low_confidence(0.53) benign(0.003) TCGA-58-A46L-01 19 11534588 11534588 G C CCDC151 Missense_Mutation p.I358M 0.18 tolerated(0.24) possibly_damaging(0.659) TCGA-58-A46L-01 19 12540867 12540867 G T ZNF443 3'UTR 0.26 TCGA-58-A46L-01 19 13876774 13876774 C T MRI1 Silent p.I126I 0.15 TCGA-58-A46L-01 19 17435964 17435964 G C ANO8 Missense_Mutation p.R965G 0.24 deleterious(0) unknown(0) TCGA-58-A46L-01 19 38229461 38229461 C G ZNF573 Missense_Mutation p.G644R 0.59 deleterious(0.03) probably_damaging(0.999) TCGA-58-A46L-01 19 38621286 38621286 G A SIPA1L3 Missense_Mutation p.R1006Q 0.12 deleterious(0) probably_damaging(0.992) TCGA-58-A46L-01 19 38948843 38948843 C T RYR1 Missense_Mutation p.P693L 0.60 probably_damaging(1) TCGA-58-A46L-01 19 41129604 41129604 T C LTBP4 Missense_Mutation p.Y1284H 0.25 deleterious(0.02) possibly_damaging(0.898) TCGA-58-A46L-01 19 49897808 49897808 C T CCDC155 Missense_Mutation p.T40M 0.39 tolerated(0.1) benign(0.397) TCGA-58-A46L-01 19 51503867 51503867 G A KLK8 Nonsense_Mutation p.R60* 0.08 TCGA-58-A46L-01 19 53456098 53456098 C T ZNF816 Silent p.E32E 0.43 TCGA-58-A46L-01 19 6665076 6665076 C A TNFSF14 Missense_Mutation p.R195L 0.42 deleterious(0.01) possibly_damaging(0.548) TCGA-58-A46L-01 19 7676663 7676663 C T CAMSAP3 Silent p.R455R 0.27 TCGA-58-A46L-01 19 9090969 9090969 C A MUC16 Silent p.A282A 0.39 TCGA-58-A46L-01 1 120263843 120263843 C T PHGDH Silent p.V63V 0.34 TCGA-58-A46L-01 1 1233443 1233443 C A ACAP3 Silent p.P322P 0.26 TCGA-58-A46L-01 1 145508060 145508060 C A RBM8A Missense_Mutation p.R38S 0.18 deleterious(0) probably_damaging(0.988) TCGA-58-A46L-01 1 158299888 158299888 C A CD1B Nonsense_Mutation p.E121* 0.71 TCGA-58-A46L-01 1 161011909 161011909 G C USF1 Silent p.T91T 0.71 TCGA-58-A46L-01 1 175066810 175066810 G T TNN Missense_Mutation p.A616S 0.62 deleterious(0.01) possibly_damaging(0.656) TCGA-58-A46L-01 1 186313134 186313134 T A TPR Missense_Mutation p.K1169M 0.51 possibly_damaging(0.781) TCGA-58-A46L-01 1 186957549 186957549 G T PLA2G4A Missense_Mutation p.R720I 0.23 deleterious(0) possibly_damaging(0.897) TCGA-58-A46L-01 1 19494625 19494625 C A UBR4 Silent p.V1265V 0.39 TCGA-58-A46L-01 1 201186530 201186530 C A IGFN1 Silent p.I3237I 0.34 TCGA-58-A46L-01 1 2103507 2103507 G A PRKCZ Missense_Mutation p.E359K 0.36 deleterious(0) probably_damaging(0.991) TCGA-58-A46L-01 1 228481056 228481056 C G OBSCN Missense_Mutation p.L4053V 0.20 benign(0.011) TCGA-58-A46L-01 1 229770906 229770906 G T URB2 Missense_Mutation p.L182F 0.28 tolerated(0.31) possibly_damaging(0.548) TCGA-58-A46L-01 1 237052539 237052539 G T MTR Silent p.V970V 0.45 TCGA-58-A46L-01 1 237872399 237872399 G T RYR2 Splice_Site p.X3381_splice 0.21 TCGA-58-A46L-01 1 240256991 240256991 G A FMN2 Missense_Mutation p.A528T 0.38 unknown(0) TCGA-58-A46L-01 1 24125177 24125177 C T GALE Silent p.L55L 0.30 TCGA-58-A46L-01 1 24125182 24125182 C G GALE Missense_Mutation p.E54Q 0.34 tolerated(0.36) benign(0.003) TCGA-58-A46L-01 1 243349353 243349353 C A CEP170 Missense_Mutation p.G432W 0.46 deleterious(0) possibly_damaging(0.765) TCGA-58-A46L-01 1 245775157 245775157 C T KIF26B Silent p.A659A 0.25 TCGA-58-A46L-01 1 247013814 247013814 C G AHCTF1 Missense_Mutation p.E1841Q 0.22 tolerated(0.06) benign(0.223) TCGA-58-A46L-01 1 247921579 247921579 G A OR1C1 Missense_Mutation p.L44F 0.19 deleterious(0.03) benign(0.002) TCGA-58-A46L-01 1 52704947 52704947 A T ZFYVE9 Nonsense_Mutation p.K620* 0.38 TCGA-58-A46L-01 1 60139745 60139745 C G FGGY Silent p.S508S 0.19 TCGA-58-A46L-01 1 65280486 65280486 G T RAVER2 Missense_Mutation p.C618F 0.40 tolerated(0.26) benign(0.287) TCGA-58-A46L-01 1 66838335 66838335 G A PDE4B Missense_Mutation p.E729K 0.49 tolerated_low_confidence(0.1) benign(0.001) TCGA-58-A46L-01 1 70300470 70300470 G A LRRC7 Missense_Mutation p.D132N 0.27 deleterious(0.01) possibly_damaging(0.546) TCGA-58-A46L-01 20 3218212 3218212 C T SLC4A11 Silent p.Q65Q 0.25 TCGA-58-A46L-01 20 33722701 33722701 C G EDEM2 Missense_Mutation p.G181A 0.25 deleterious(0.02) probably_damaging(1) TCGA-58-A46L-01 20 42159476 42159476 C A L3MBTL1 Missense_Mutation p.R389S 0.07 deleterious(0) possibly_damaging(0.648) TCGA-58-A46L-01 20 44511821 44511821 C T ZSWIM1 Missense_Mutation p.S197F 0.25 deleterious(0) possibly_damaging(0.467) TCGA-58-A46L-01 20 52193525 52193525 G A ZNF217 Missense_Mutation p.S593L 0.05 tolerated(0.69) benign(0.006) TCGA-58-A46L-01 22 38165336 38165336 G T TRIOBP Missense_Mutation p.G2268V 0.23 deleterious(0) probably_damaging(0.953) TCGA-58-A46L-01 22 47189510 47189510 G T TBC1D22A Missense_Mutation p.D78Y 0.26 deleterious(0) possibly_damaging(0.896) TCGA-58-A46L-01 22 50616267 50616267 G A PANX2 Missense_Mutation p.D376N 0.33 deleterious(0) probably_damaging(0.975) TCGA-58-A46L-01 2 10581765 10581765 C G ODC1 Missense_Mutation p.D371H 0.11 tolerated(0.2) benign(0.008) TCGA-58-A46L-01 2 10581781 10581781 C G ODC1 Silent p.R365R 0.19 TCGA-58-A46L-01 2 108487425 108487425 A G RGPD4 Missense_Mutation p.K989E 0.20 deleterious(0.03) possibly_damaging(0.519) TCGA-58-A46L-01 2 130898845 130898845 G T CCDC74B Missense_Mutation p.S190Y 0.26 tolerated(0.4) possibly_damaging(0.838) TCGA-58-A46L-01 2 172841183 172841183 A T HAT1 Missense_Mutation p.K304I 0.19 tolerated(0.38) benign(0.001) TCGA-58-A46L-01 2 178388510 178388510 G T AGPS Missense_Mutation p.G611V 0.13 deleterious(0) probably_damaging(0.999) TCGA-58-A46L-01 2 179582053 179582053 C A TTN Nonsense_Mutation p.G8470* 0.48 TCGA-58-A46L-01 2 179598459 179598459 G C TTN Silent p.S5219S 0.48 TCGA-58-A46L-01 2 179598460 179598460 G T TTN Missense_Mutation p.S5219Y 0.48 TCGA-58-A46L-01 2 179605210 179605210 C A TTN Silent p.V4250V 0.17 TCGA-58-A46L-01 2 179605211 179605211 A C TTN Missense_Mutation p.V4250G 0.17 TCGA-58-A46L-01 2 179606546 179606546 G T TTN Missense_Mutation p.P3805Q 0.20 TCGA-58-A46L-01 2 197521539 197521539 G C CCDC150 Missense_Mutation p.R120P 0.44 deleterious(0) probably_damaging(0.918) TCGA-58-A46L-01 2 198593217 198593217 C A BOLL 3'UTR 0.29 TCGA-58-A46L-01 2 202570139 202570139 C A ALS2 Missense_Mutation p.K1542N 0.17 tolerated(0.08) benign(0.044) TCGA-58-A46L-01 2 230657795 230657795 T A TRIP12 Missense_Mutation p.L1270F 0.57 deleterious(0.03) probably_damaging(0.994) TCGA-58-A46L-01 2 242002290 242002290 C A SNED1 Missense_Mutation p.S780R 0.44 tolerated(0.4) benign(0.022) TCGA-58-A46L-01 2 55756025 55756025 A C CCDC104 Missense_Mutation p.Q98H 0.60 deleterious(0.03) possibly_damaging(0.766) TCGA-58-A46L-01 2 64321818 64321818 C T PELI1 3'UTR 0.25 TCGA-58-A46L-01 2 85889217 85889217 C G SFTPB Missense_Mutation p.E352Q 0.18 deleterious(0.01) benign(0.375) TCGA-58-A46L-01 2 89442105 89442105 C A IGKV3-20 Missense_Mutation p.E100D 0.56 deleterious(0.01) benign(0.023) TCGA-58-A46L-01 2 89986899 89986899 G C IGKV2D-29 Missense_Mutation p.W60C 0.35 deleterious(0) possibly_damaging(0.703) TCGA-58-A46L-01 3 10183774 10183774 G T VHL Silent p.P81P 0.63 TCGA-58-A46L-01 3 118647451 118647451 G T IGSF11 Missense_Mutation p.T110N 0.26 deleterious(0) probably_damaging(0.99) TCGA-58-A46L-01 3 124811007 124811007 C A SLC12A8 Missense_Mutation p.V581F 0.24 deleterious(0) benign(0.14) TCGA-58-A46L-01 3 124896707 124896707 A G SLC12A8 Silent p.L168L 0.26 TCGA-58-A46L-01 3 126916187 126916187 T A C3orf56 Missense_Mutation p.L220Q 0.28 tolerated(0.06) possibly_damaging(0.883) TCGA-58-A46L-01 3 133169146 133169146 G T BFSP2 Splice_Site p.X244_splice 0.20 TCGA-58-A46L-01 3 133698338 133698338 G C SLCO2A1 Missense_Mutation p.S74C 0.16 deleterious(0) probably_damaging(1) TCGA-58-A46L-01 3 137749971 137749971 C T CLDN18 Silent p.H258H 0.25 TCGA-58-A46L-01 3 142681152 142681152 C T PAQR9 Missense_Mutation p.A343T 0.18 tolerated(0.07) benign(0.024) TCGA-58-A46L-01 3 157816017 157816017 A C SHOX2 Missense_Mutation p.H289Q 0.38 deleterious(0.03) probably_damaging(0.998) TCGA-58-A46L-01 3 173998562 173998562 G A NLGN1 Silent p.T647T 0.15 TCGA-58-A46L-01 3 183381310 183381310 C G KLHL24 Missense_Mutation p.L329V 0.10 tolerated(0.1) probably_damaging(0.999) TCGA-58-A46L-01 3 184039750 184039750 G A EIF4G1 Missense_Mutation p.E467K 0.13 tolerated(0.71) possibly_damaging(0.899) TCGA-58-A46L-01 3 186338456 186338456 C A AHSG Missense_Mutation p.P281T 0.29 deleterious(0.05) benign(0.164) TCGA-58-A46L-01 3 186338457 186338457 C A AHSG Missense_Mutation p.P281H 0.29 deleterious(0.04) benign(0.037) TCGA-58-A46L-01 3 195615339 195615339 C T TNK2 Missense_Mutation p.V104I 0.15 deleterious(0) probably_damaging(0.999) TCGA-58-A46L-01 3 21606115 21606115 C T ZNF385D Missense_Mutation p.R76K 0.46 tolerated(1) benign(0) TCGA-58-A46L-01 3 9743712 9743712 G C MTMR14 3'UTR 0.41 TCGA-58-A46L-01 3 98072887 98072887 G T OR5K4 Missense_Mutation p.G64C 0.26 deleterious(0) benign(0.078) TCGA-58-A46L-01 4 114290903 114290903 C G ANK2 Missense_Mutation p.S3851C 0.42 probably_damaging(1) TCGA-58-A46L-01 4 129924906 129924906 A G SCLT1 Missense_Mutation p.L139P 0.32 deleterious(0.01) probably_damaging(0.986) TCGA-58-A46L-01 4 138452693 138452693 T C PCDH18 Missense_Mutation p.I184V 0.43 tolerated(0.11) benign(0.052) TCGA-58-A46L-01 4 177142441 177142441 C A ASB5 Splice_Site p.X179_splice 0.40 TCGA-58-A46L-01 4 20620389 20620389 A G SLIT2 Splice_Site p.X1450_splice 0.36 TCGA-58-A46L-01 4 52860771 52860771 G T LRRC66 Missense_Mutation p.P806H 0.30 deleterious(0) probably_damaging(0.982) TCGA-58-A46L-01 4 55976732 55976732 A C KDR Missense_Mutation p.Y365D 0.13 deleterious(0) probably_damaging(0.968) TCGA-58-A46L-01 5 132223577 132223577 G C AFF4 Missense_Mutation p.S965C 0.41 deleterious(0) probably_damaging(0.995) TCGA-58-A46L-01 5 140203664 140203664 C G PCDHA5 Silent p.L768L 0.41 TCGA-58-A46L-01 5 140222515 140222515 G T PCDHA8 Missense_Mutation p.A537S 0.44 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-58-A46L-01 5 140264143 140264143 C A PCDHA13 Missense_Mutation p.P764T 0.42 tolerated_low_confidence(0.08) benign(0.196) TCGA-58-A46L-01 5 140264144 140264144 C G PCDHA13 Missense_Mutation p.P764R 0.41 deleterious_low_confidence(0.02) possibly_damaging(0.705) TCGA-58-A46L-01 5 140588425 140588425 G C PCDHB12 5'UTR 0.26 TCGA-58-A46L-01 5 140956374 140956374 C T DIAPH1 Missense_Mutation p.D449N 0.33 unknown(0) TCGA-58-A46L-01 5 1441512 1441512 C A SLC6A3 Missense_Mutation p.G127V 0.17 deleterious(0) probably_damaging(0.992) TCGA-58-A46L-01 5 1441513 1441513 C G SLC6A3 Missense_Mutation p.G127R 0.16 deleterious(0) probably_damaging(0.996) TCGA-58-A46L-01 5 145720047 145720047 T A POU4F3 3'UTR 0.41 TCGA-58-A46L-01 5 149748339 149748339 A T TCOF1 Missense_Mutation p.T147S 0.37 tolerated(0.18) benign(0.084) TCGA-58-A46L-01 5 150946729 150946729 G A FAT2 Silent p.A588A 0.39 TCGA-58-A46L-01 5 160761889 160761889 G C GABRB2 Silent p.L234L 0.27 TCGA-58-A46L-01 5 178408725 178408725 C T GRM6 Missense_Mutation p.R856Q 0.48 deleterious(0.04) possibly_damaging(0.895) TCGA-58-A46L-01 5 24593597 24593597 C A CDH10 Translation_Start_Site p.M1? 0.45 tolerated(0.1) benign(0.38) TCGA-58-A46L-01 5 42801046 42801046 T A SEPP1 Missense_Mutation p.I308L 0.22 tolerated_low_confidence(0.32) benign(0.116) TCGA-58-A46L-01 5 45262530 45262530 G T HCN1 Silent p.P722P 0.29 TCGA-58-A46L-01 5 482197 482197 T G SLC9A3 Missense_Mutation p.K478Q 0.33 deleterious(0.01) benign(0.342) TCGA-58-A46L-01 5 56219563 56219563 G C MIER3 Missense_Mutation p.Q383E 0.42 tolerated(0.95) benign(0.167) TCGA-58-A46L-01 5 61738885 61738885 C A IPO11 Missense_Mutation p.R112S 0.21 deleterious(0) probably_damaging(1) TCGA-58-A46L-01 5 61833043 61833043 C T IPO11 Missense_Mutation p.A766V 0.24 deleterious(0.02) benign(0.359) TCGA-58-A46L-01 5 82789723 82789723 G T VCAN Missense_Mutation p.V241L 0.38 deleterious(0) probably_damaging(0.999) TCGA-58-A46L-01 5 864530 864530 C A BRD9 3'UTR 0.21 TCGA-58-A46L-01 5 9630069 9630069 T C TAS2R1 Missense_Mutation p.I26V 0.32 tolerated(0.25) benign(0.223) TCGA-58-A46L-01 6 123319192 123319192 G T CLVS2 Missense_Mutation p.K90N 0.22 tolerated(0.27) benign(0.074) TCGA-58-A46L-01 6 123319193 123319193 G T CLVS2 Missense_Mutation p.A91S 0.21 tolerated(0.28) benign(0.284) TCGA-58-A46L-01 6 129649433 129649433 C A LAMA2 Missense_Mutation p.P1396Q 0.21 deleterious(0.01) benign(0.396) TCGA-58-A46L-01 6 136589406 136589406 C A BCLAF1 Missense_Mutation p.R764L 0.17 tolerated(0.06) benign(0.433) TCGA-58-A46L-01 6 138628516 138628516 G T KIAA1244 Missense_Mutation p.V1319F 0.28 deleterious(0.02) benign(0.197) TCGA-58-A46L-01 6 157803155 157803155 C G ZDHHC14 Missense_Mutation p.I34M 0.29 tolerated(0.13) benign(0.008) TCGA-58-A46L-01 6 165801858 165801858 G C PDE10A Missense_Mutation p.P581A 0.24 deleterious(0.03) benign(0.029) TCGA-58-A46L-01 6 28251986 28251986 G A PGBD1 Silent p.Q132Q 0.48 TCGA-58-A46L-01 6 33374254 33374254 G A KIFC1 Silent p.L606L 0.65 TCGA-58-A46L-01 6 33386036 33386036 C G CUTA 5'UTR 0.55 TCGA-58-A46L-01 6 41557554 41557554 C A FOXP4 Missense_Mutation p.H371N 0.30 deleterious(0.02) benign(0.286) TCGA-58-A46L-01 6 42890879 42890879 A T PTCRA Missense_Mutation p.D58V 0.22 deleterious(0) benign(0.183) TCGA-58-A46L-01 6 42995192 42995192 A T RRP36 Missense_Mutation p.H207L 0.49 tolerated(0.14) benign(0.229) TCGA-58-A46L-01 6 43418552 43418552 C G DLK2 Missense_Mutation p.E293Q 0.31 deleterious(0) probably_damaging(0.998) TCGA-58-A46L-01 6 43970673 43970673 G T C6orf223 Missense_Mutation p.R180L 0.35 deleterious_low_confidence(0.01) unknown(0) TCGA-58-A46L-01 6 69703720 69703720 A G BAI3 Missense_Mutation p.T599A 0.21 tolerated(0.06) possibly_damaging(0.571) TCGA-58-A46L-01 6 71571576 71571576 G A B3GAT2 Missense_Mutation p.T281I 0.23 tolerated(0.09) possibly_damaging(0.626) TCGA-58-A46L-01 7 102047908 102047908 G A PRKRIP1 Silent p.L140L 0.29 TCGA-58-A46L-01 7 105662801 105662801 G T CDHR3 Missense_Mutation p.R661S 0.27 tolerated(0.11) benign(0.043) TCGA-58-A46L-01 7 107880477 107880477 C A NRCAM Missense_Mutation p.R11L 0.12 tolerated(0.75) benign(0.011) TCGA-58-A46L-01 7 120686960 120686960 T A CPED1 Missense_Mutation p.D151E 0.26 deleterious(0) benign(0.283) TCGA-58-A46L-01 7 120686961 120686961 C A CPED1 Missense_Mutation p.L152M 0.26 tolerated(0.05) possibly_damaging(0.708) TCGA-58-A46L-01 7 123136801 123136801 G A IQUB Missense_Mutation p.H395Y 0.11 tolerated(0.67) benign(0.37) TCGA-58-A46L-01 7 123136802 123136802 C A IQUB Missense_Mutation p.R394S 0.12 deleterious(0) probably_damaging(0.986) TCGA-58-A46L-01 7 126698196 126698196 C A GRM8 Intron 0.26 TCGA-58-A46L-01 7 126883028 126883028 C A GRM8 Missense_Mutation p.E77D 0.34 deleterious(0) probably_damaging(0.989) TCGA-58-A46L-01 7 131912285 131912285 C A PLXNA4 Missense_Mutation p.G603W 0.10 deleterious(0) probably_damaging(1) TCGA-58-A46L-01 7 135304243 135304243 C T NUP205 Silent p.L1346L 0.20 TCGA-58-A46L-01 7 142498819 142498819 G A TRBC2 Silent p.L32L 0.09 TCGA-58-A46L-01 7 142563781 142563781 G A EPHB6 Missense_Mutation p.R390H 0.35 tolerated(0.15) probably_damaging(1) TCGA-58-A46L-01 7 142622580 142622580 C A TRPV5 Intron 0.31 TCGA-58-A46L-01 7 150768232 150768232 G T SLC4A2 Missense_Mutation p.C608F 0.31 deleterious(0.03) possibly_damaging(0.902) TCGA-58-A46L-01 7 158560446 158560446 T A ESYT2 Missense_Mutation p.I323F 0.24 deleterious(0.03) probably_damaging(0.92) TCGA-58-A46L-01 7 6085703 6085703 T A EIF2AK1 Missense_Mutation p.K210M 0.37 deleterious(0) probably_damaging(0.999) TCGA-58-A46L-01 7 7636054 7636054 G T MIOS Missense_Mutation p.C788F 0.19 deleterious(0) probably_damaging(1) TCGA-58-A46L-01 7 79828604 79828604 C G GNAI1 Missense_Mutation p.L123V 0.24 tolerated(0.22) benign(0.109) TCGA-58-A46L-01 7 81355238 81355238 T A HGF Missense_Mutation p.Q379L 0.24 deleterious(0.01) possibly_damaging(0.639) TCGA-58-A46L-01 7 83590734 83590734 T A SEMA3A Nonsense_Mutation p.R757* 0.23 TCGA-58-A46L-01 7 88962980 88962980 C A ZNF804B Missense_Mutation p.H228Q 0.24 tolerated(0.28) probably_damaging(0.914) TCGA-58-A46L-01 7 88962981 88962981 C A ZNF804B Missense_Mutation p.L229I 0.24 deleterious(0.01) possibly_damaging(0.635) TCGA-58-A46L-01 7 89929282 89929282 G T C7orf63 Missense_Mutation p.K653N 0.26 tolerated(0.15) benign(0.355) TCGA-58-A46L-01 7 90042168 90042169 CG T CLDN12 Frame_Shift_Del p.R60Cfs*9 0.23 TCGA-58-A46L-01 8 105361147 105361147 G T DCSTAMP Missense_Mutation p.D123Y 0.38 deleterious(0) probably_damaging(0.927) TCGA-58-A46L-01 8 113529409 113529409 C G CSMD3 Missense_Mutation p.G1537A 0.18 deleterious(0) probably_damaging(0.964) TCGA-58-A46L-01 8 113529410 113529410 C G CSMD3 Missense_Mutation p.G1537R 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-58-A46L-01 8 126071763 126071763 C A KIAA0196 Nonsense_Mutation p.E515* 0.23 TCGA-58-A46L-01 8 131880161 131880161 G T ADCY8 Nonsense_Mutation p.S714* 0.41 TCGA-58-A46L-01 8 99441636 99441636 C T KCNS2 Missense_Mutation p.R477C 0.24 deleterious_low_confidence(0) benign(0.001) TCGA-58-A46L-01 9 107298678 107298678 T A OR13C3 Silent p.S139S 0.59 TCGA-58-A46L-01 9 108424861 108424861 C T TAL2 Silent p.L28L 0.19 TCGA-58-A46L-01 9 112143972 112143972 C T PTPN3 Missense_Mutation p.R875Q 0.19 deleterious(0.01) benign(0.301) TCGA-58-A46L-01 9 119188021 119188021 T C ASTN2 3'UTR 0.67 TCGA-58-A46L-01 9 120475323 120475323 G T TLR4 Missense_Mutation p.C306F 0.19 deleterious(0) probably_damaging(0.992) TCGA-58-A46L-01 9 121929540 121929540 A G BRINP1 Missense_Mutation p.I703T 0.26 deleterious(0) possibly_damaging(0.84) TCGA-58-A46L-01 9 125391492 125391492 G A OR1B1 Missense_Mutation p.A108V 0.40 tolerated(0.58) benign(0.002) TCGA-58-A46L-01 9 138516312 138516312 C A GLT6D1 Silent p.L154L 0.27 TCGA-58-A46L-01 9 139391424 139391424 G A NOTCH1 Missense_Mutation p.A2256V 0.08 tolerated(0.13) benign(0.048) TCGA-58-A46L-01 9 14848731 14848731 G T FREM1 Missense_Mutation p.A398E 0.45 tolerated(0.9) benign(0.018) TCGA-58-A46L-01 9 36246133 36246133 T G GNE Missense_Mutation p.M202L 0.41 tolerated(0.37) probably_damaging(0.984) TCGA-58-A46L-01 9 5720218 5720218 T G KIAA1432 Silent p.T159T 0.08 TCGA-58-A46L-01 9 90500452 90500452 G T SPATA31E1 Missense_Mutation p.E350D 0.29 tolerated(0.09) probably_damaging(0.997) TCGA-58-A46L-01 X 103267996 103267996 G T H2BFWT Missense_Mutation p.D79E 0.57 tolerated(0.09) possibly_damaging(0.766) TCGA-58-A46L-01 X 107225199 107225199 G A TEX13B Silent p.I53I 0.61 TCGA-58-A46L-01 X 107402863 107402863 G A COL4A6 Silent p.T1548T 0.57 TCGA-58-A46L-01 X 123615642 123615642 C T TENM1 Missense_Mutation p.D1297N 0.64 tolerated(0.06) probably_damaging(0.993) TCGA-58-A46L-01 X 22117217 22117217 G T PHEX Missense_Mutation p.V343F 0.57 tolerated(0.33) probably_damaging(0.981) TCGA-58-A46L-01 X 49777869 49777869 A G CLCN5 Intron 0.52 TCGA-58-A46M-01 10 118215245 118215245 A T PNLIPRP3 Missense_Mutation p.E156D 0.63 deleterious(0.05) benign(0.005) TCGA-58-A46M-01 10 129179539 129179539 C T DOCK1 Intron 0.22 TCGA-58-A46M-01 10 13224966 13224966 C T MCM10 Missense_Mutation p.L323F 0.22 deleterious(0.02) probably_damaging(0.962) TCGA-58-A46M-01 10 15172200 15172200 C G NMT2 Silent p.G277G 0.39 TCGA-58-A46M-01 10 15600086 15600086 G T ITGA8 Missense_Mutation p.P918H 0.28 tolerated(0.1) benign(0.021) TCGA-58-A46M-01 10 16526809 16526809 G C PTER Silent p.V142V 0.33 TCGA-58-A46M-01 10 18787330 18787330 C T CACNB2 Missense_Mutation p.A127V 0.36 deleterious(0.04) benign(0.006) TCGA-58-A46M-01 10 28024229 28024229 C G MKX Missense_Mutation p.L141F 0.41 deleterious(0.02) probably_damaging(0.999) TCGA-58-A46M-01 10 30900866 30900866 C G LYZL2 3'UTR 0.45 TCGA-58-A46M-01 10 31809462 31809462 G T ZEB1 Missense_Mutation p.G401V 0.20 deleterious(0) probably_damaging(1) TCGA-58-A46M-01 10 32594859 32594859 C T EPC1 Missense_Mutation p.E52K 0.40 deleterious(0) probably_damaging(0.935) TCGA-58-A46M-01 10 51464734 51464734 A T AGAP7 Missense_Mutation p.D574E 0.12 tolerated(0.89) benign(0.013) TCGA-58-A46M-01 10 60553311 60553311 C T BICC1 Missense_Mutation p.A372V 0.37 deleterious(0.03) benign(0.022) TCGA-58-A46M-01 10 6557108 6557108 T C PRKCQ Splice_Site 0.42 TCGA-58-A46M-01 10 96702180 96702180 G T CYP2C9 Intron 0.46 TCGA-58-A46M-01 10 98405399 98405399 C A PIK3AP1 Missense_Mutation p.K402N 0.47 deleterious(0.05) probably_damaging(0.969) TCGA-58-A46M-01 11 100933223 100933223 C G PGR Missense_Mutation p.E723Q 0.46 deleterious(0) probably_damaging(0.999) TCGA-58-A46M-01 11 108562705 108562705 G A DDX10 Missense_Mutation p.E360K 0.20 tolerated(0.13) benign(0.392) TCGA-58-A46M-01 11 109294402 109294402 C - C11orf87 Frame_Shift_Del p.P15Rfs*27 0.42 TCGA-58-A46M-01 11 115102077 115102077 T A CADM1 Silent p.L186L 0.16 TCGA-58-A46M-01 11 124253169 124253169 C T OR8B2 Missense_Mutation p.R24Q 0.08 tolerated_low_confidence(1) benign(0) TCGA-58-A46M-01 11 128680780 128680780 C T FLI1 Missense_Mutation p.A419V 0.51 deleterious(0.01) benign(0.15) TCGA-58-A46M-01 11 15199919 15199919 G T INSC Missense_Mutation p.V216L 0.13 tolerated(0.49) benign(0.143) TCGA-58-A46M-01 11 18636946 18636946 G T SPTY2D1 Missense_Mutation p.S292Y 0.27 deleterious(0.01) benign(0.047) TCGA-58-A46M-01 11 20981980 20981980 C T NELL1 Missense_Mutation p.H392Y 0.21 tolerated(0.99) benign(0.008) TCGA-58-A46M-01 11 30938481 30938481 C T DCDC1 Missense_Mutation p.D1130N 0.42 tolerated(0.37) possibly_damaging(0.728) TCGA-58-A46M-01 11 43904157 43904157 G A ALKBH3 5'UTR 0.12 TCGA-58-A46M-01 11 45671415 45671415 C A CHST1 Silent p.S353S 0.21 TCGA-58-A46M-01 11 45925547 45925547 C T MAPK8IP1 Missense_Mutation p.P501S 0.10 deleterious(0) probably_damaging(1) TCGA-58-A46M-01 11 49830114 49830114 G T RP11-707M1.1 RNA 0.26 TCGA-58-A46M-01 11 49974592 49974592 G T OR4C13 Silent p.L206L 0.17 TCGA-58-A46M-01 11 5020957 5020957 G A OR51L1 Missense_Mutation p.V249M 0.22 deleterious(0) probably_damaging(0.975) TCGA-58-A46M-01 11 5153109 5153109 T C OR52A5 Missense_Mutation p.Y255C 0.40 deleterious(0) probably_damaging(1) TCGA-58-A46M-01 11 55579653 55579653 C T OR5L1 Silent p.A237A 0.58 TCGA-58-A46M-01 11 55703724 55703724 G A OR5I1 Silent p.I51I 0.56 TCGA-58-A46M-01 11 56043595 56043595 T A OR5T1 Missense_Mutation p.Y161N 0.53 deleterious(0) possibly_damaging(0.534) TCGA-58-A46M-01 11 5655972 5655972 A G TRIM34 Missense_Mutation p.K211E 0.14 tolerated(0.46) benign(0.15) TCGA-58-A46M-01 11 5776054 5776054 G T OR52N4 Missense_Mutation p.W28C 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-58-A46M-01 11 57996065 57996065 G A OR10Q1 Missense_Mutation p.P95S 0.46 tolerated(0.22) benign(0.367) TCGA-58-A46M-01 11 58189947 58189947 C A OR5B2 Missense_Mutation p.S263I 0.56 deleterious_low_confidence(0) benign(0.371) TCGA-58-A46M-01 11 5842506 5842506 A G OR52N2 Missense_Mutation p.K314R 0.40 tolerated(0.19) benign(0.014) TCGA-58-A46M-01 11 6190731 6190731 T C OR52B2 Missense_Mutation p.I276V 0.24 tolerated(0.07) probably_damaging(0.997) TCGA-58-A46M-01 11 63174062 63174062 C T SLC22A9 Silent p.V389V 0.39 TCGA-58-A46M-01 11 64525725 64525725 C A PYGM Missense_Mutation p.G174V 0.22 deleterious(0) probably_damaging(0.993) TCGA-58-A46M-01 11 64606359 64606359 G A CDC42BPG Missense_Mutation p.P298S 0.52 deleterious(0) probably_damaging(0.998) TCGA-58-A46M-01 11 6472160 6472160 C G TRIM3 Missense_Mutation p.R611P 0.16 deleterious(0) possibly_damaging(0.763) TCGA-58-A46M-01 11 6622398 6622398 C A RRP8 Missense_Mutation p.A300S 0.32 deleterious(0) possibly_damaging(0.578) TCGA-58-A46M-01 11 66466474 66466474 C T SPTBN2 Missense_Mutation p.D1286N 0.57 tolerated(0.41) benign(0.012) TCGA-58-A46M-01 11 67926629 67926629 C T SUV420H1 Missense_Mutation p.R395Q 0.39 deleterious(0.01) probably_damaging(0.971) TCGA-58-A46M-01 11 68337281 68337281 G T PPP6R3 Silent p.L398L 0.23 TCGA-58-A46M-01 11 686948 686948 G T DEAF1 Silent p.T238T 0.39 TCGA-58-A46M-01 11 6891223 6891223 T A OR10A2 Missense_Mutation p.S80T 0.38 tolerated(0.06) benign(0.057) TCGA-58-A46M-01 11 6976940 6976940 A G ZNF215 Silent p.G244G 0.20 TCGA-58-A46M-01 11 7065141 7065141 G A NLRP14 Silent p.L628L 0.16 TCGA-58-A46M-01 11 72424085 72424085 G A ARAP1 Intron 0.64 TCGA-58-A46M-01 11 78387424 78387424 G A TENM4 Missense_Mutation p.R1757W 0.32 deleterious(0) probably_damaging(0.945) TCGA-58-A46M-01 11 85445318 85445318 G A SYTL2 Missense_Mutation p.R351W 0.17 deleterious(0) possibly_damaging(0.677) TCGA-58-A46M-01 11 86519513 86519513 A G PRSS23 Silent p.R276R 0.22 TCGA-58-A46M-01 11 89075363 89075363 T A NOX4 Splice_Site p.X406_splice 0.42 TCGA-58-A46M-01 11 89939391 89939391 C A CHORDC1 Missense_Mutation p.G181V 0.40 deleterious(0.01) probably_damaging(0.914) TCGA-58-A46M-01 11 95713095 95713095 G A MAML2 Nonsense_Mutation p.Q830* 0.35 TCGA-58-A46M-01 12 105418087 105418087 T A ALDH1L2 3'UTR 0.29 TCGA-58-A46M-01 12 108127925 108127925 T A PRDM4 3'UTR 0.39 TCGA-58-A46M-01 12 112165765 112165765 G T ACAD10 Splice_Site p.X385_splice 0.22 TCGA-58-A46M-01 12 115120719 115120719 T A TBX3 Missense_Mutation p.E96V 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-58-A46M-01 12 119588940 119588940 C T SRRM4 Nonsense_Mutation p.R399* 0.39 TCGA-58-A46M-01 12 124979739 124979739 G A NCOR2 Missense_Mutation p.P20L 0.43 unknown(0) TCGA-58-A46M-01 12 132262746 132262746 A T SFSWAP Missense_Mutation p.K760M 0.50 deleterious_low_confidence(0.01) possibly_damaging(0.891) TCGA-58-A46M-01 12 133365749 133365749 C A GOLGA3 Missense_Mutation p.G892V 0.24 tolerated(0.09) probably_damaging(1) TCGA-58-A46M-01 12 14923720 14923720 C G HIST4H4 Missense_Mutation p.G100A 0.51 deleterious_low_confidence(0.01) possibly_damaging(0.885) TCGA-58-A46M-01 12 24736624 24736624 G A LINC00477 RNA 0.66 TCGA-58-A46M-01 12 40013059 40013059 A T ABCD2 Missense_Mutation p.L120H 0.20 deleterious(0) probably_damaging(1) TCGA-58-A46M-01 12 41327645 41327645 G A CNTN1 Missense_Mutation p.G317E 0.32 deleterious(0) probably_damaging(1) TCGA-58-A46M-01 12 43862447 43862447 T A ADAMTS20 Missense_Mutation p.K393N 0.34 tolerated(1) benign(0.001) TCGA-58-A46M-01 12 49745264 49745264 G T DNAJC22 Missense_Mutation p.K335N 0.39 tolerated(0.11) benign(0.305) TCGA-58-A46M-01 12 53009089 53009089 C T KRT73 Missense_Mutation p.E233K 0.23 deleterious(0) probably_damaging(1) TCGA-58-A46M-01 12 57861794 57861794 G T GLI1 Missense_Mutation p.K365N 0.42 deleterious(0) probably_damaging(0.999) TCGA-58-A46M-01 12 58152578 58152578 C T MARCH9 Silent p.C313C 0.15 TCGA-58-A46M-01 12 6138634 6138634 C A VWF Missense_Mutation p.M947I 0.57 tolerated(0.36) benign(0.004) TCGA-58-A46M-01 12 62946930 62946930 A T MON2 Silent p.S1062S 0.46 TCGA-58-A46M-01 12 63543702 63543702 C A AVPR1A Silent p.A305A 0.21 TCGA-58-A46M-01 12 69125446 69125446 G T NUP107 Missense_Mutation p.G649C 0.28 deleterious(0) probably_damaging(0.964) TCGA-58-A46M-01 12 72058172 72058172 G T THAP2 5'UTR 0.22 TCGA-58-A46M-01 12 75897812 75897812 G T KRR1 Silent p.R235R 0.43 TCGA-58-A46M-01 12 78444759 78444759 C T NAV3 Missense_Mutation p.T783M 0.25 tolerated(0.43) possibly_damaging(0.882) TCGA-58-A46M-01 12 8211738 8211738 G C C3AR1 Silent p.P348P 0.67 TCGA-58-A46M-01 12 94543560 94543560 C T PLXNC1 Silent p.T271T 0.21 TCGA-58-A46M-01 12 96374370 96374370 C T HAL Missense_Mutation p.G495R 0.11 deleterious(0) probably_damaging(1) TCGA-58-A46M-01 13 102227859 102227859 G C ITGBL1 Missense_Mutation p.R183T 0.21 tolerated(0.31) benign(0.013) TCGA-58-A46M-01 13 32722022 32722022 G A FRY Missense_Mutation p.G444S 0.57 tolerated(1) benign(0.011) TCGA-58-A46M-01 13 32722080 32722080 C T FRY Missense_Mutation p.A463V 0.47 deleterious(0) probably_damaging(0.973) TCGA-58-A46M-01 13 42830495 42830495 A T FHP1 RNA 0.10 TCGA-58-A46M-01 13 42830522 42830522 G A FHP1 RNA 0.15 TCGA-58-A46M-01 13 42830528 42830528 C G FHP1 RNA 0.16 TCGA-58-A46M-01 13 46288423 46288423 C T SPERT Silent p.T421T 0.42 TCGA-58-A46M-01 13 46721147 46721147 C G LCP1 Missense_Mutation p.R357P 0.52 tolerated(0.06) possibly_damaging(0.506) TCGA-58-A46M-01 13 61986082 61986082 C A PCDH20 Missense_Mutation p.G717V 0.68 deleterious(0) probably_damaging(0.992) TCGA-58-A46M-01 13 79953010 79953025 TATTTTGCTAGGGCGG - RBM26 Frame_Shift_Del p.S30Lfs*6 0.37 TCGA-58-A46M-01 14 106610462 106610462 T A IGHV3-15 Missense_Mutation p.I70F 0.55 deleterious_low_confidence(0.01) benign(0.396) TCGA-58-A46M-01 14 106692180 106692180 G A IGHV3-21 5'UTR 0.68 TCGA-58-A46M-01 14 19377623 19377623 C A OR11H12 Silent p.G10G 0.20 TCGA-58-A46M-01 14 20019900 20019900 G - POTEM Frame_Shift_Del p.C108Afs*59 0.10 TCGA-58-A46M-01 14 20216177 20216177 G A OR4Q3 Silent p.E197E 0.24 TCGA-58-A46M-01 14 20248950 20248950 A G OR4M1 Missense_Mutation p.I157V 0.19 tolerated(0.14) benign(0.029) TCGA-58-A46M-01 14 20389130 20389130 G C OR4K5 Missense_Mutation p.R122T 0.19 deleterious(0) probably_damaging(0.911) TCGA-58-A46M-01 14 21990995 21990995 T C SALL2 Missense_Mutation p.K956R 0.44 tolerated(0.05) probably_damaging(0.991) TCGA-58-A46M-01 14 22090565 22090565 C T TRAV1-1 Silent p.G57G 0.12 TCGA-58-A46M-01 14 23530621 23530621 C A ACIN1 Nonsense_Mutation p.E1162* 0.45 TCGA-58-A46M-01 14 23900984 23900984 G T MYH7 Missense_Mutation p.Q209K 0.27 tolerated(0.75) benign(0.013) TCGA-58-A46M-01 14 25043685 25043685 C A CTSG Silent p.R120R 0.40 TCGA-58-A46M-01 14 31852979 31852979 T A HEATR5A Splice_Site p.X156_splice 0.81 TCGA-58-A46M-01 14 50844258 50844258 C T CDKL1 Intron 0.75 TCGA-58-A46M-01 14 59789643 59789643 A T DAAM1 Silent p.L158L 0.57 TCGA-58-A46M-01 14 71215626 71215626 T C MAP3K9 Missense_Mutation p.K416E 0.13 tolerated(0.12) possibly_damaging(0.596) TCGA-58-A46M-01 14 76452152 76452152 A T IFT43 Missense_Mutation p.D8V 0.71 deleterious(0.01) unknown(0) TCGA-58-A46M-01 14 89041127 89041127 G T ZC3H14 Missense_Mutation p.D318Y 0.23 deleterious(0) possibly_damaging(0.809) TCGA-58-A46M-01 14 93649682 93649682 T C MOAP1 Silent p.A302A 0.62 TCGA-58-A46M-01 14 99182494 99182494 G A C14orf177 5'UTR 0.19 TCGA-58-A46M-01 15 20666465 20666465 G T HERC2P3 RNA 0.29 TCGA-58-A46M-01 15 22332635 22332635 G C RP11-69H14.6 RNA 0.24 TCGA-58-A46M-01 15 23261940 23261940 G T GOLGA8I Missense_Mutation p.R351L 0.45 tolerated(0.06) benign(0.428) TCGA-58-A46M-01 15 23890202 23890202 C A MAGEL2 Missense_Mutation p.E293D 0.22 tolerated(0.07) benign(0.007) TCGA-58-A46M-01 15 25472191 25472191 G T SNORD115-33 5'Flank 0.17 TCGA-58-A46M-01 15 25479278 25479278 C A SNORD115-33 3'Flank 0.33 TCGA-58-A46M-01 15 26806161 26806161 C A GABRB3 Missense_Mutation p.G333V 0.24 deleterious(0.03) probably_damaging(0.97) TCGA-58-A46M-01 15 29347032 29347032 C A APBA2 Missense_Mutation p.H315Q 0.18 tolerated_low_confidence(1) benign(0) TCGA-58-A46M-01 15 43498549 43498549 G T EPB42 Missense_Mutation p.L563I 0.33 tolerated(0.08) benign(0.335) TCGA-58-A46M-01 15 55965573 55965573 C T PRTG Silent p.V616V 0.45 TCGA-58-A46M-01 15 58919960 58919960 T A ADAM10 Silent p.S433S 0.20 TCGA-58-A46M-01 15 62174028 62174028 C A VPS13C Splice_Site p.X3209_splice 0.55 TCGA-58-A46M-01 15 75685019 75685019 C G SIN3A Missense_Mutation p.Q805H 0.21 tolerated(0.62) benign(0.004) TCGA-58-A46M-01 15 79350787 79350787 C T RASGRF1 Missense_Mutation p.M140I 0.48 deleterious(0.02) benign(0.381) TCGA-58-A46M-01 15 80472531 80472531 G A FAH Silent p.P342P 0.12 TCGA-58-A46M-01 15 81633851 81633851 G T TMC3 Missense_Mutation p.A575D 0.36 deleterious(0) probably_damaging(0.93) TCGA-58-A46M-01 15 89422397 89422397 C A HAPLN3 Missense_Mutation p.E199D 0.18 tolerated(0.6) possibly_damaging(0.792) TCGA-58-A46M-01 15 91420185 91420185 G T FURIN Silent p.G144G 0.18 TCGA-58-A46M-01 16 24578807 24578807 C G RBBP6 Missense_Mutation p.Q645E 0.65 deleterious_low_confidence(0) benign(0.253) TCGA-58-A46M-01 16 27509047 27509047 C T GTF3C1 Missense_Mutation p.S754N 0.78 tolerated(0.73) benign(0.001) TCGA-58-A46M-01 16 34712215 34712215 C A RP11-80F22.9 RNA 0.36 TCGA-58-A46M-01 16 396232 396232 C - AXIN1 Frame_Shift_Del p.G265Efs*149 0.39 TCGA-58-A46M-01 16 48399353 48399353 G C SIAH1 Silent p.S12S 0.83 TCGA-58-A46M-01 16 56686956 56686956 G A MT1B Silent p.E55E 0.56 TCGA-58-A46M-01 16 67943243 67943243 G T PSKH1 Silent p.R197R 0.60 TCGA-58-A46M-01 16 71898953 71898953 T A ZNF821 Splice_Site p.X56_splice 0.54 TCGA-58-A46M-01 16 72830330 72830330 G T ZFHX3 Missense_Mutation p.P2084Q 0.57 benign(0.266) TCGA-58-A46M-01 16 78056575 78056575 G T CLEC3A Missense_Mutation p.D27Y 0.56 deleterious(0.03) probably_damaging(0.973) TCGA-58-A46M-01 17 10402017 10402017 G T MYH1 Missense_Mutation p.N1369K 0.51 deleterious(0) possibly_damaging(0.788) TCGA-58-A46M-01 17 18539833 18539833 C T TBC1D28 Nonsense_Mutation p.W192* 0.06 TCGA-58-A46M-01 17 21207849 21207849 G T MAP2K3 Missense_Mutation p.C227F 0.20 deleterious(0) probably_damaging(0.998) TCGA-58-A46M-01 17 33348479 33348479 T C RFFL Missense_Mutation p.S168G 0.17 tolerated(0.25) benign(0) TCGA-58-A46M-01 17 38552662 38552662 C T TOP2A Missense_Mutation p.G1198E 0.22 deleterious(0.02) benign(0.273) TCGA-58-A46M-01 17 39388897 39388897 C A KRTAP9-3 Missense_Mutation p.H48Q 0.23 tolerated(0.84) unknown(0) TCGA-58-A46M-01 17 39388898 39388898 C A KRTAP9-3 Missense_Mutation p.P49T 0.18 tolerated(0.12) unknown(0) TCGA-58-A46M-01 17 39388902 39388902 C A KRTAP9-3 Missense_Mutation p.T50N 0.18 tolerated(0.06) unknown(0) TCGA-58-A46M-01 17 39671657 39671657 T C KRT15 Intron 0.18 TCGA-58-A46M-01 17 39740076 39740076 C A KRT14 Missense_Mutation p.R288L 0.21 deleterious(0) probably_damaging(0.995) TCGA-58-A46M-01 17 40556793 40556793 C G PTRF Missense_Mutation p.R362P 0.29 tolerated(0.18) benign(0.208) TCGA-58-A46M-01 17 44061180 44061180 C - MAPT Frame_Shift_Del p.R338Gfs*67 0.21 TCGA-58-A46M-01 17 4804397 4804397 G C CHRNE Silent p.V230V 0.57 TCGA-58-A46M-01 17 5329364 5329364 G C RPAIN Missense_Mutation p.E129D 0.45 tolerated(0.48) probably_damaging(0.98) TCGA-58-A46M-01 17 54543888 54543888 C A ANKFN1 Missense_Mutation p.P580T 0.24 tolerated(0.09) benign(0.366) TCGA-58-A46M-01 17 61898995 61898995 A G FTSJ3 Silent p.F535F 0.14 TCGA-58-A46M-01 17 7578493 7578493 C T TP53 Nonsense_Mutation p.W146* 0.70 TCGA-58-A46M-01 17 79514037 79514037 C A C17orf70 Missense_Mutation p.A691S 0.36 tolerated(0.21) benign(0.407) TCGA-58-A46M-01 17 79517662 79517662 C T C17orf70 Silent p.G286G 0.29 TCGA-58-A46M-01 17 80674635 80674635 G T FN3KRP Nonsense_Mutation p.E2* 0.19 TCGA-58-A46M-01 17 9783795 9783795 A G GLP2R Missense_Mutation p.I416V 0.06 tolerated(0.26) benign(0.026) TCGA-58-A46M-01 18 13826524 13826524 T C MC5R Missense_Mutation p.F254L 0.52 deleterious(0.05) probably_damaging(0.994) TCGA-58-A46M-01 18 34376738 34376738 G A TPGS2 3'UTR 0.31 TCGA-58-A46M-01 18 71790623 71790623 C T FBXO15 Missense_Mutation p.R373H 0.15 tolerated(0.22) benign(0.01) TCGA-58-A46M-01 18 8784695 8784695 T C SOGA2 Missense_Mutation p.F529L 0.59 deleterious(0) probably_damaging(0.999) TCGA-58-A46M-01 19 10600408 10600410 GGT - KEAP1 In_Frame_Del p.N482_R483delinsS 0.53 TCGA-58-A46M-01 19 110928 110928 G A OR4F17 Missense_Mutation p.V84I 0.44 tolerated(0.08) benign(0.007) TCGA-58-A46M-01 19 11123774 11123774 C T SMARCA4 Silent p.I808I 0.67 TCGA-58-A46M-01 19 12878841 12878841 T A HOOK2 Missense_Mutation p.T401S 0.22 tolerated(0.08) benign(0.001) TCGA-58-A46M-01 19 12878886 12878886 A C HOOK2 Missense_Mutation p.W386G 0.24 deleterious(0.01) possibly_damaging(0.561) TCGA-58-A46M-01 19 17316118 17316118 C A MYO9B Missense_Mutation p.S1679R 0.42 deleterious(0) benign(0.258) TCGA-58-A46M-01 19 17330154 17330154 C A USE1 Silent p.T185T 0.25 TCGA-58-A46M-01 19 17379800 17379800 G A BABAM1 Missense_Mutation p.S62N 0.31 tolerated_low_confidence(0.4) benign(0.031) TCGA-58-A46M-01 19 18193064 18193064 C A IL12RB1 Silent p.S45S 0.58 TCGA-58-A46M-01 19 19312767 19312767 G C NR2C2AP Missense_Mutation p.I129M 0.22 deleterious(0) possibly_damaging(0.786) TCGA-58-A46M-01 19 21990704 21990704 C - ZNF43 Frame_Shift_Del p.G712Afs*84 0.26 TCGA-58-A46M-01 19 31768032 31768032 C T TSHZ3 Silent p.Q889Q 0.23 TCGA-58-A46M-01 19 31769168 31769168 C T TSHZ3 Missense_Mutation p.D511N 0.48 deleterious(0) probably_damaging(0.998) TCGA-58-A46M-01 19 33608788 33608788 G A GPATCH1 Missense_Mutation p.D752N 0.24 deleterious(0) probably_damaging(1) TCGA-58-A46M-01 19 36884485 36884485 G T ZFP82 Missense_Mutation p.P253T 0.11 deleterious(0) probably_damaging(0.934) TCGA-58-A46M-01 19 40902546 40902546 C T PRX Silent p.E571E 0.15 TCGA-58-A46M-01 19 40947593 40947593 A G SERTAD3 Missense_Mutation p.V132A 0.17 tolerated(0.09) probably_damaging(0.956) TCGA-58-A46M-01 19 41497359 41497359 G A CYP2B6 Missense_Mutation p.G50D 0.13 tolerated(0.78) possibly_damaging(0.619) TCGA-58-A46M-01 19 42858007 42858007 G T MEGF8 Missense_Mutation p.R1214L 0.21 tolerated(0.09) benign(0.01) TCGA-58-A46M-01 19 44981778 44981778 C A ZNF180 Missense_Mutation p.G307V 0.45 deleterious(0.01) probably_damaging(1) TCGA-58-A46M-01 19 46289203 46289203 T C DMWD Silent p.P517P 0.49 TCGA-58-A46M-01 19 47260050 47260050 C A FKRP Missense_Mutation p.P448Q 0.56 deleterious(0) probably_damaging(0.999) TCGA-58-A46M-01 19 50979695 50979695 C A FAM71E1 5'UTR 0.37 TCGA-58-A46M-01 19 51920796 51920796 C G SIGLEC10 Intron 0.12 TCGA-58-A46M-01 19 52249721 52249721 C A FPR1 Missense_Mutation p.C176F 0.10 deleterious(0) probably_damaging(0.999) TCGA-58-A46M-01 19 53302107 53302107 A C ZNF28 3'UTR 0.16 TCGA-58-A46M-01 19 53625765 53625765 G A ZNF415 5'UTR 0.27 TCGA-58-A46M-01 19 54254476 54254476 G T MIR522 RNA 0.45 TCGA-58-A46M-01 19 54418632 54418632 G T CACNG7 Silent p.T99T 0.44 TCGA-58-A46M-01 19 54609302 54609302 G A NDUFA3 Silent p.T49T 0.06 TCGA-58-A46M-01 19 54746128 54746128 G A LILRA6 Silent p.S43S 0.11 TCGA-58-A46M-01 19 54754691 54754691 G T LILRB5 Missense_Mutation p.P579T 0.59 deleterious(0.02) probably_damaging(0.939) TCGA-58-A46M-01 19 55107691 55107691 G T LILRA1 Silent p.P332P 0.51 TCGA-58-A46M-01 19 55543654 55543654 C A GP6 Nonsense_Mutation p.E60* 0.13 TCGA-58-A46M-01 19 55587824 55587824 C A EPS8L1 Silent p.A4A 0.24 TCGA-58-A46M-01 19 56041144 56041144 C G SBK2 Missense_Mutation p.E335Q 0.30 tolerated(0.07) unknown(0) TCGA-58-A46M-01 19 56244727 56244727 C G NLRP9 Missense_Mutation p.G157A 0.18 deleterious(0.01) probably_damaging(1) TCGA-58-A46M-01 19 56424207 56424207 A T NLRP13 Missense_Mutation p.L326M 0.52 deleterious(0.03) possibly_damaging(0.897) TCGA-58-A46M-01 19 57066711 57066711 G C ZFP28 Missense_Mutation p.D853H 0.14 deleterious_low_confidence(0) possibly_damaging(0.815) TCGA-58-A46M-01 19 57665792 57665792 G - DUXA Frame_Shift_Del p.R202Efs*12 0.34 TCGA-58-A46M-01 19 58115646 58115646 A T ZNF530 Missense_Mutation p.Q11L 0.53 tolerated(0.14) possibly_damaging(0.82) TCGA-58-A46M-01 19 58231970 58231970 A T ZNF671 Missense_Mutation p.I495N 0.51 deleterious(0.04) benign(0.208) TCGA-58-A46M-01 19 6760969 6760969 G A SH2D3A Silent p.G33G 0.20 TCGA-58-A46M-01 19 8455223 8455223 C A RAB11B 5'UTR 0.60 TCGA-58-A46M-01 19 9086086 9086086 G A MUC16 Missense_Mutation p.P1910L 0.56 unknown(0) TCGA-58-A46M-01 19 9267983 9267983 G T ZNF317 Nonsense_Mutation p.E68* 0.63 TCGA-58-A46M-01 19 9271087 9271087 G C ZNF317 Missense_Mutation p.G256R 0.57 deleterious(0.01) probably_damaging(1) TCGA-58-A46M-01 1 103463876 103463876 T A COL11A1 Missense_Mutation p.D729V 0.13 unknown(0) TCGA-58-A46M-01 1 119427675 119427675 C T TBX15 Missense_Mutation p.G391R 0.37 tolerated(0.06) possibly_damaging(0.561) TCGA-58-A46M-01 1 120277958 120277958 G A PHGDH Silent p.G228G 0.26 TCGA-58-A46M-01 1 12429704 12429704 G A VPS13D Silent p.R3585R 0.27 TCGA-58-A46M-01 1 12446368 12446368 T C VPS13D Missense_Mutation p.L3870P 0.63 probably_damaging(0.997) TCGA-58-A46M-01 1 142713459 142713459 G T RP11-417J8.6 RNA 0.43 TCGA-58-A46M-01 1 145304494 145304494 A T NBPF10 Missense_Mutation p.E476V 0.15 possibly_damaging(0.871) TCGA-58-A46M-01 1 146684932 146684932 C G FMO5 Missense_Mutation p.V144L 0.11 deleterious(0) possibly_damaging(0.777) TCGA-58-A46M-01 1 150549720 150549720 T A MCL1 3'UTR 0.79 TCGA-58-A46M-01 1 151752584 151752584 C A TDRKH Silent p.V88V 0.71 TCGA-58-A46M-01 1 152191474 152191474 A G HRNR Silent p.A877A 0.79 TCGA-58-A46M-01 1 152282723 152282723 C T FLG Missense_Mutation p.E1547K 0.14 benign(0.292) TCGA-58-A46M-01 1 152286919 152286919 C A FLG Missense_Mutation p.G148V 0.12 benign(0.097) TCGA-58-A46M-01 1 152770433 152770433 G A LCE1D Missense_Mutation p.G55S 0.28 unknown(0) TCGA-58-A46M-01 1 154931784 154931784 C T PYGO2 Missense_Mutation p.G231D 0.07 tolerated(0.5) benign(0.143) TCGA-58-A46M-01 1 158259711 158259711 G C CD1C 5'UTR 1.00 TCGA-58-A46M-01 1 158583557 158583557 G A SPTA1 Missense_Mutation p.H2315Y 0.71 deleterious(0) benign(0.079) TCGA-58-A46M-01 1 158605719 158605719 C T SPTA1 Missense_Mutation p.E1806K 0.12 tolerated(0.28) possibly_damaging(0.582) TCGA-58-A46M-01 1 159410397 159410397 G C OR10J1 Silent p.L283L 0.10 TCGA-58-A46M-01 1 161476121 161476121 C T FCGR2A Intron 0.11 TCGA-58-A46M-01 1 169512301 169512301 C T F5 Missense_Mutation p.R676K 0.13 tolerated(0.11) benign(0.027) TCGA-58-A46M-01 1 172525121 172525121 C T SUCO Missense_Mutation p.S134F 0.07 deleterious_low_confidence(0.02) possibly_damaging(0.609) TCGA-58-A46M-01 1 173010397 173010397 G T TNFSF18 3'UTR 0.73 TCGA-58-A46M-01 1 177199234 177199234 C T BRINP2 Silent p.F74F 0.12 TCGA-58-A46M-01 1 182873548 182873548 C T SHCBP1L Missense_Mutation p.E452K 0.12 deleterious(0.01) possibly_damaging(0.851) TCGA-58-A46M-01 1 186056572 186056572 C T HMCN1 Intron 0.14 TCGA-58-A46M-01 1 190067580 190067580 C T BRINP3 Silent p.E623E 0.57 TCGA-58-A46M-01 1 19644210 19644210 C T PQLC2 Silent p.S13S 0.53 TCGA-58-A46M-01 1 200522508 200522508 A G KIF14 3'UTR 0.71 TCGA-58-A46M-01 1 200972855 200972855 G T KIF21B Silent p.T357T 0.64 TCGA-58-A46M-01 1 204109167 204109167 A G ETNK2 Silent p.F288F 0.50 TCGA-58-A46M-01 1 215953277 215953277 G T USH2A Nonsense_Mutation p.S3616* 0.68 TCGA-58-A46M-01 1 221057957 221057957 G T HLX Missense_Mutation p.A460S 0.59 tolerated_low_confidence(0.45) benign(0.002) TCGA-58-A46M-01 1 223951910 223951910 G T CAPN2 Splice_Site p.X564_splice 0.64 TCGA-58-A46M-01 1 227920749 227920749 G A SNAP47 5'Flank 0.13 TCGA-58-A46M-01 1 233394950 233394950 T A PCNXL2 Missense_Mutation p.T220S 0.70 tolerated_low_confidence(0.54) benign(0.002) TCGA-58-A46M-01 1 240519180 240519180 G A FMN2 Silent p.K1610K 0.78 TCGA-58-A46M-01 1 2411651 2411651 A T PLCH2 Missense_Mutation p.D155V 0.46 deleterious(0) probably_damaging(0.998) TCGA-58-A46M-01 1 247695571 247695571 C T OR2C3 Silent p.Q81Q 0.69 TCGA-58-A46M-01 1 247695573 247695573 G A OR2C3 Nonsense_Mutation p.Q81* 0.70 TCGA-58-A46M-01 1 248343929 248343929 C A OR2M2 Silent p.I214I 0.76 TCGA-58-A46M-01 1 248512261 248512261 G T OR14C36 Missense_Mutation p.R62M 0.08 tolerated(0.22) probably_damaging(0.937) TCGA-58-A46M-01 1 27121174 27121174 C T PIGV Nonsense_Mutation p.Q217* 0.25 TCGA-58-A46M-01 1 34112334 34112334 C A CSMD2 Missense_Mutation p.R1523L 0.49 deleterious(0) probably_damaging(0.982) TCGA-58-A46M-01 1 55166016 55166016 G T MROH7 Missense_Mutation p.R996L 0.48 deleterious(0) probably_damaging(0.973) TCGA-58-A46M-01 1 57173309 57173309 G T PRKAA2 Missense_Mutation p.V528F 0.57 tolerated_low_confidence(0.72) benign(0.09) TCGA-58-A46M-01 1 63902744 63902744 C A ALG6 3'UTR 0.41 TCGA-58-A46M-01 1 85487776 85487776 C A MCOLN3 Missense_Mutation p.V433L 0.39 deleterious(0) probably_damaging(0.992) TCGA-58-A46M-01 1 86622187 86622187 G A COL24A1 5'UTR 0.14 TCGA-58-A46M-01 1 87379812 87379812 C A SEP15 5'UTR 0.30 TCGA-58-A46M-01 1 92181868 92181868 T C TGFBR3 Silent p.L597L 0.62 TCGA-58-A46M-01 20 23614609 23614609 C A CST3 Missense_Mutation p.A129S 0.14 tolerated(0.78) benign(0.001) TCGA-58-A46M-01 20 24950900 24950900 C A APMAP Missense_Mutation p.D216Y 0.11 deleterious(0) probably_damaging(0.998) TCGA-58-A46M-01 20 30226822 30226822 T C COX4I2 Translation_Start_Site p.M1? 0.20 deleterious(0) benign(0.321) TCGA-58-A46M-01 20 3208479 3208479 A G SLC4A11 Missense_Mutation p.I904T 0.08 deleterious(0) probably_damaging(1) TCGA-58-A46M-01 20 32357940 32357940 C G ZNF341 Missense_Mutation p.D481E 0.65 tolerated(0.33) benign(0.02) TCGA-58-A46M-01 20 33596475 33596475 C A TRPC4AP Silent p.S529S 0.68 TCGA-58-A46M-01 20 42208642 42208642 C T SGK2 Missense_Mutation p.P354S 0.19 tolerated(0.8) benign(0.009) TCGA-58-A46M-01 20 42223348 42223348 G C IFT52 Missense_Mutation p.E4Q 0.23 tolerated(0.2) benign(0.02) TCGA-58-A46M-01 20 42694490 42694490 G T TOX2 Missense_Mutation p.G367W 0.32 deleterious(0.04) probably_damaging(0.959) TCGA-58-A46M-01 20 48523014 48523014 G A SPATA2 Silent p.S235S 0.47 TCGA-58-A46M-01 20 49575693 49575693 G T MOCS3 Missense_Mutation p.G105V 0.22 deleterious(0) probably_damaging(0.997) TCGA-58-A46M-01 20 61143902 61143902 A G C20orf166 5'Flank 0.44 TCGA-58-A46M-01 20 62493252 62493253 CG - ABHD16B Frame_Shift_Del p.L123Afs*26 0.50 TCGA-58-A46M-01 20 62560799 62560799 C T DNAJC5 Missense_Mutation p.S81L 0.43 deleterious(0) probably_damaging(0.936) TCGA-58-A46M-01 21 10906818 10906818 C A TPTE 3'UTR 0.31 TCGA-58-A46M-01 22 16287397 16287397 G T POTEH Missense_Mutation p.S163R 0.31 tolerated(0.08) probably_damaging(0.999) TCGA-58-A46M-01 22 24837297 24837297 G A ADORA2A Missense_Mutation p.G360D 0.50 deleterious_low_confidence(0.02) possibly_damaging(0.874) TCGA-58-A46M-01 22 26736515 26736515 C T SEZ6L Missense_Mutation p.T710M 0.43 tolerated(0.45) possibly_damaging(0.473) TCGA-58-A46M-01 22 41736112 41736112 G A ZC3H7B Missense_Mutation p.G370D 0.16 tolerated(0.2) benign(0.311) TCGA-58-A46M-01 22 50957092 50957092 G C NCAPH2 Missense_Mutation p.E221Q 0.16 tolerated(0.21) probably_damaging(0.944) TCGA-58-A46M-01 22 50988114 50988114 G A KLHDC7B Missense_Mutation p.A507T 0.18 tolerated(0.1) benign(0.102) TCGA-58-A46M-01 2 100176891 100176891 T A AFF3 Missense_Mutation p.M1068L 0.17 tolerated(0.08) benign(0.007) TCGA-58-A46M-01 2 114195342 114195342 C T CBWD2 5'UTR 0.43 TCGA-58-A46M-01 2 125204457 125204457 G T CNTNAP5 Missense_Mutation p.K287N 0.44 tolerated(0.05) benign(0.349) TCGA-58-A46M-01 2 1271180 1271180 T A SNTG2 Missense_Mutation p.L374Q 0.27 deleterious(0.01) possibly_damaging(0.868) TCGA-58-A46M-01 2 138169340 138169340 C G THSD7B Missense_Mutation p.Q953E 0.38 tolerated(0.06) benign(0.092) TCGA-58-A46M-01 2 138373785 138373785 T A THSD7B Missense_Mutation p.L1158Q 0.55 deleterious(0.05) unknown(0) TCGA-58-A46M-01 2 140990837 140990837 C A LRP1B Missense_Mutation p.R4573L 0.16 benign(0.25) TCGA-58-A46M-01 2 1426864 1426864 C T TPO Missense_Mutation p.R48C 0.05 tolerated(0.14) benign(0.002) TCGA-58-A46M-01 2 155099316 155099316 G A GALNT13 Missense_Mutation p.G195E 0.61 deleterious(0) probably_damaging(0.993) TCGA-58-A46M-01 2 158978070 158978070 G T UPP2 Nonsense_Mutation p.E259* 0.12 TCGA-58-A46M-01 2 1653198 1653198 C A PXDN Missense_Mutation p.R785L 0.50 tolerated(0.25) benign(0.233) TCGA-58-A46M-01 2 168106446 168106446 A T XIRP2 Silent p.S2848S 0.49 TCGA-58-A46M-01 2 168114974 168114974 G T XIRP2 3'UTR 0.21 TCGA-58-A46M-01 2 171819385 171819386 - CAACCT GORASP2 In_Frame_Ins p.N321_L322dup 0.24 TCGA-58-A46M-01 2 179615898 179615898 G T TTN Intron 0.49 TCGA-58-A46M-01 2 179634875 179634875 C T TTN Silent p.L2851L 0.06 TCGA-58-A46M-01 2 183606044 183606044 G A DNAJC10 Silent p.L384L 0.77 TCGA-58-A46M-01 2 189928713 189928713 C A COL5A2 Missense_Mutation p.G588V 0.69 probably_damaging(1) TCGA-58-A46M-01 2 1926178 1926178 C T MYT1L Missense_Mutation p.E455K 0.14 deleterious(0.01) possibly_damaging(0.678) TCGA-58-A46M-01 2 1926231 1926231 G T MYT1L Missense_Mutation p.A437D 0.57 deleterious(0) probably_damaging(0.997) TCGA-58-A46M-01 2 198948872 198948872 G T PLCL1 Missense_Mutation p.A211S 0.68 deleterious(0.01) probably_damaging(0.977) TCGA-58-A46M-01 2 213403333 213403333 C A ERBB4 5'UTR 0.82 TCGA-58-A46M-01 2 228221774 228221774 A T MFF Missense_Mutation p.M324L 0.71 tolerated(0.57) benign(0.006) TCGA-58-A46M-01 2 228881571 228881571 A G SPHKAP Silent p.T1333T 0.72 TCGA-58-A46M-01 2 234622095 234622095 C G UGT1A5 Missense_Mutation p.P153R 0.16 deleterious(0) probably_damaging(0.998) TCGA-58-A46M-01 2 234638253 234638253 C G UGT1A3 Missense_Mutation p.L161V 0.71 tolerated(0.91) benign(0.099) TCGA-58-A46M-01 2 241715281 241715281 G T KIF1A Silent p.L315L 0.70 TCGA-58-A46M-01 2 25967171 25967171 C T ASXL2 Missense_Mutation p.A679T 0.45 deleterious(0) probably_damaging(0.915) TCGA-58-A46M-01 2 29222092 29222092 C T FAM179A Missense_Mutation p.P62L 0.22 deleterious(0) benign(0.155) TCGA-58-A46M-01 2 32740189 32740189 C T BIRC6 Silent p.T3567T 0.20 TCGA-58-A46M-01 2 37076927 37076927 C A STRN Silent p.S701S 0.15 TCGA-58-A46M-01 2 39931297 39931297 A C TMEM178A Missense_Mutation p.L159F 0.19 deleterious(0.01) probably_damaging(0.969) TCGA-58-A46M-01 2 55746985 55746985 C T CCDC104 Silent p.I16I 0.12 TCGA-58-A46M-01 2 62934219 62934219 G A EHBP1 5'UTR 0.20 TCGA-58-A46M-01 2 68368823 68368823 T A WDR92 Intron 0.33 TCGA-58-A46M-01 2 71797408 71797408 G T DYSF Missense_Mutation p.W1010L 0.14 deleterious(0.02) probably_damaging(0.94) TCGA-58-A46M-01 2 85826702 85826702 C T TMEM150A Missense_Mutation p.V174M 0.12 tolerated(0.88) benign(0.004) TCGA-58-A46M-01 2 85981389 85981389 T A ATOH8 Missense_Mutation p.L26H 0.29 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-58-A46M-01 2 86459785 86459785 C A REEP1 Missense_Mutation p.K193N 0.22 tolerated_low_confidence(0.06) possibly_damaging(0.788) TCGA-58-A46M-01 2 9520908 9520908 C A ASAP2 Missense_Mutation p.R663S 0.15 deleterious(0.01) benign(0.067) TCGA-58-A46M-01 3 108363196 108363196 C T DZIP3 Missense_Mutation p.H443Y 0.21 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-58-A46M-01 3 109028118 109028118 G T DPPA2 Missense_Mutation p.P81T 0.27 tolerated(0.12) benign(0.08) TCGA-58-A46M-01 3 112666759 112666759 G A CD200R1 Missense_Mutation p.A27V 0.39 tolerated(0.47) benign(0.135) TCGA-58-A46M-01 3 119217678 119217678 A T TIMMDC1 Missense_Mutation p.E33V 0.16 tolerated(0.12) benign(0.265) TCGA-58-A46M-01 3 120424848 120424848 C A RABL3 Missense_Mutation p.G128W 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-58-A46M-01 3 121132140 121132140 A G STXBP5L Silent p.T1052T 0.36 TCGA-58-A46M-01 3 126062518 126062518 G - KLF15 3'UTR 0.26 TCGA-58-A46M-01 3 128990639 128990639 G T COPG1 Missense_Mutation p.G625C 0.30 deleterious(0.05) benign(0.019) TCGA-58-A46M-01 3 129034275 129034275 C A H1FX Silent p.A157A 0.57 TCGA-58-A46M-01 3 133099154 133099154 G C TMEM108 Missense_Mutation p.R200P 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.774) TCGA-58-A46M-01 3 134911589 134911589 G A EPHB1 Missense_Mutation p.G685D 0.39 deleterious(0) probably_damaging(0.996) TCGA-58-A46M-01 3 137484335 137484335 G C SOX14 Missense_Mutation p.A237P 0.27 deleterious_low_confidence(0) benign(0.004) TCGA-58-A46M-01 3 138739090 138739090 C T PRR23B Silent p.E138E 0.07 TCGA-58-A46M-01 3 142537164 142537164 A G PCOLCE2 3'UTR 0.09 TCGA-58-A46M-01 3 148545606 148545606 A T CPB1 5'UTR 0.09 TCGA-58-A46M-01 3 150845706 150845706 G C MED12L Missense_Mutation p.C164S 0.18 tolerated(0.84) probably_damaging(0.985) TCGA-58-A46M-01 3 152150547 152150547 A T MBNL1 Silent p.S129S 0.21 TCGA-58-A46M-01 3 154138888 154138888 C T GPR149 Silent p.Q521Q 0.07 TCGA-58-A46M-01 3 155199767 155199767 T A PLCH1 Missense_Mutation p.S1358C 0.58 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-58-A46M-01 3 155241758 155241758 T G PLCH1 Silent p.A454A 0.10 TCGA-58-A46M-01 3 160018712 160018712 C T IFT80 Missense_Mutation p.S425N 0.07 deleterious(0) possibly_damaging(0.765) TCGA-58-A46M-01 3 160783216 160783216 A G PPM1L Silent p.L200L 0.15 TCGA-58-A46M-01 3 160783255 160783259 GCGCG A PPM1L Frame_Shift_Del p.R214Gfs*22 0.50 TCGA-58-A46M-01 3 16217181 16217181 G A GALNT15 Missense_Mutation p.E175K 0.68 deleterious(0) benign(0.184) TCGA-58-A46M-01 3 164756880 164756880 A T SI Missense_Mutation p.Y763N 0.11 deleterious(0) probably_damaging(0.999) TCGA-58-A46M-01 3 164783122 164783122 A G SI Missense_Mutation p.V245A 0.19 deleterious(0.03) benign(0.066) TCGA-58-A46M-01 3 164783203 164783203 C A SI Missense_Mutation p.G218V 0.31 deleterious(0.03) benign(0.331) TCGA-58-A46M-01 3 173322385 173322385 G A NLGN1 5'UTR 0.15 TCGA-58-A46M-01 3 173998417 173998417 G T NLGN1 Missense_Mutation p.R599I 0.52 deleterious(0) probably_damaging(0.978) TCGA-58-A46M-01 3 184567775 184567775 G A VPS8 Missense_Mutation p.A240T 0.48 deleterious(0.01) probably_damaging(0.994) TCGA-58-A46M-01 3 191861753 191861753 G C FGF12 3'UTR 0.13 TCGA-58-A46M-01 3 194386990 194386990 C T LSG1 Missense_Mutation p.E126K 0.12 deleterious(0.01) possibly_damaging(0.656) TCGA-58-A46M-01 3 195484029 195484029 A T MUC4 Missense_Mutation p.S5053T 0.14 benign(0.058) TCGA-58-A46M-01 3 21462774 21462774 C A ZNF385D Missense_Mutation p.A374S 0.52 tolerated(0.13) probably_damaging(0.935) TCGA-58-A46M-01 3 38051452 38051452 G A PLCD1 Silent p.G431G 0.71 TCGA-58-A46M-01 3 47449421 47449421 T G PTPN23 Missense_Mutation p.I387S 0.16 unknown(0) TCGA-58-A46M-01 3 50405325 50405325 A G CACNA2D2 Missense_Mutation p.F725L 0.36 tolerated(0.54) benign(0.023) TCGA-58-A46M-01 3 75471216 75471216 G A FAM86DP RNA 0.24 TCGA-58-A46M-01 3 86028412 86028412 G T CADM2 Missense_Mutation p.A350S 0.49 tolerated(0.63) benign(0) TCGA-58-A46M-01 3 87299027 87299027 A T CHMP2B Silent p.T108T 0.46 TCGA-58-A46M-01 3 97852432 97852432 C T OR5H1 Silent p.V297V 0.36 TCGA-58-A46M-01 4 108615127 108615127 C A PAPSS1 Missense_Mutation p.A71S 0.56 deleterious(0.03) benign(0.266) TCGA-58-A46M-01 4 115544595 115544595 C T UGT8 Missense_Mutation p.R187C 0.59 deleterious(0.01) possibly_damaging(0.79) TCGA-58-A46M-01 4 122059778 122059778 C G TNIP3 Intron 0.61 TCGA-58-A46M-01 4 122780190 122780190 G A BBS7 Missense_Mutation p.T162I 0.54 tolerated(0.53) benign(0.002) TCGA-58-A46M-01 4 155237112 155237112 T C DCHS2 Missense_Mutation p.D1228G 0.50 deleterious(0) probably_damaging(0.994) TCGA-58-A46M-01 4 163032431 163032431 G A FSTL5 Nonsense_Mutation p.R40* 0.22 TCGA-58-A46M-01 4 176733260 176733260 G T GPM6A Intron 0.50 TCGA-58-A46M-01 4 185012345 185012345 G A ENPP6 Silent p.L436L 0.58 TCGA-58-A46M-01 4 186066362 186066362 A C SLC25A4 Missense_Mutation p.I186L 0.57 tolerated(0.1) possibly_damaging(0.795) TCGA-58-A46M-01 4 187073171 187073171 G T FAM149A Nonsense_Mutation p.E20* 0.48 TCGA-58-A46M-01 4 37903974 37903974 T A TBC1D1 Missense_Mutation p.D86E 0.49 tolerated(0.08) probably_damaging(0.996) TCGA-58-A46M-01 4 46060346 46060346 T C GABRG1 Silent p.R268R 0.51 TCGA-58-A46M-01 4 47676443 47676443 G C CORIN Missense_Mutation p.L442V 0.52 tolerated(0.34) benign(0.007) TCGA-58-A46M-01 4 47765517 47765517 T C CORIN Missense_Mutation p.M166V 0.55 tolerated(1) benign(0.002) TCGA-58-A46M-01 4 66197749 66197749 C A EPHA5 Nonsense_Mutation p.E984* 0.11 TCGA-58-A46M-01 4 70146636 70146636 C A UGT2B28 Missense_Mutation p.L140I 0.37 deleterious(0.02) possibly_damaging(0.839) TCGA-58-A46M-01 4 728725 728725 A C PCGF3 Silent p.R39R 0.57 TCGA-58-A46M-01 4 76551188 76551188 G A CDKL2 5'UTR 0.12 TCGA-58-A46M-01 4 76943072 76943072 C A CXCL10 3'UTR 0.16 TCGA-58-A46M-01 4 77660144 77660144 C A SHROOM3 Missense_Mutation p.P273Q 0.57 deleterious(0.03) probably_damaging(0.936) TCGA-58-A46M-01 4 83372368 83372368 C T ENOPH1 Missense_Mutation p.A120V 0.25 tolerated(0.06) benign(0.015) TCGA-58-A46M-01 4 85663 85663 G T Z95704.2 RNA 0.47 TCGA-58-A46M-01 5 101794162 101794162 T C SLCO6A1 Missense_Mutation p.Q352R 0.45 tolerated(0.07) benign(0.055) TCGA-58-A46M-01 5 115152068 115152068 T C CDO1 Silent p.P9P 0.53 TCGA-58-A46M-01 5 13737379 13737379 G T DNAH5 Silent p.R3813R 0.41 TCGA-58-A46M-01 5 140250230 140250230 C A PCDHA11 Silent p.G514G 0.26 TCGA-58-A46M-01 5 140263388 140263388 C T PCDHA13 Missense_Mutation p.A512V 0.11 deleterious_low_confidence(0) benign(0.432) TCGA-58-A46M-01 5 140574303 140574303 C A PCDHB10 Silent p.R726R 0.29 TCGA-58-A46M-01 5 140682787 140682787 C G SLC25A2 Missense_Mutation p.G216R 0.34 deleterious(0) probably_damaging(1) TCGA-58-A46M-01 5 140745432 140745432 G C PCDHGA5 Missense_Mutation p.G512A 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-58-A46M-01 5 140746076 140746076 G A PCDHGA5 Missense_Mutation p.A727T 0.17 tolerated_low_confidence(0.13) benign(0.023) TCGA-58-A46M-01 5 140751065 140751065 G T PCDHGB3 Silent p.L368L 0.32 TCGA-58-A46M-01 5 149504395 149504395 C A PDGFRB Splice_Site p.X603_splice 0.41 TCGA-58-A46M-01 5 149515166 149515166 G - PDGFRB Frame_Shift_Del p.R106Vfs*37 0.31 TCGA-58-A46M-01 5 149751742 149751742 G A TCOF1 Silent p.E271E 0.38 TCGA-58-A46M-01 5 169533393 169533393 C T FOXI1 Silent p.L144L 0.29 TCGA-58-A46M-01 5 170736537 170736537 C T TLX3 Silent p.Y56Y 0.56 TCGA-58-A46M-01 5 171327105 171327105 C A FBXW11 Splice_Site p.X125_splice 0.36 TCGA-58-A46M-01 5 171777466 171777466 G T SH3PXD2B Silent p.R305R 0.40 TCGA-58-A46M-01 5 180432974 180432974 C T BTNL3 3'UTR 0.44 TCGA-58-A46M-01 5 23509657 23509657 C A PRDM9 Missense_Mutation p.R50S 0.47 deleterious_low_confidence(0) benign(0.128) TCGA-58-A46M-01 5 24488078 24488078 C A CDH10 Silent p.R687R 0.21 TCGA-58-A46M-01 5 24488079 24488079 C A CDH10 Missense_Mutation p.R687L 0.21 deleterious(0.01) probably_damaging(0.982) TCGA-58-A46M-01 5 24537752 24537752 G T CDH10 Nonsense_Mutation p.S88* 0.45 TCGA-58-A46M-01 5 31323347 31323347 G T CDH6 Missense_Mutation p.D769Y 0.72 deleterious(0) probably_damaging(0.951) TCGA-58-A46M-01 5 33954502 33954502 C G SLC45A2 Silent p.L332L 0.85 TCGA-58-A46M-01 5 5235201 5235201 G - ADAMTS16 Frame_Shift_Del p.D643Tfs*31 0.17 TCGA-58-A46M-01 5 5306762 5306762 C A ADAMTS16 Missense_Mutation p.P1111Q 0.24 tolerated(0.63) benign(0.003) TCGA-58-A46M-01 5 5319212 5319212 C T ADAMTS16 Silent p.G1212G 0.20 TCGA-58-A46M-01 5 55192245 55192245 G T IL31RA Silent p.R280R 0.55 TCGA-58-A46M-01 5 79854860 79854860 A G ANKRD34B Missense_Mutation p.Y327H 0.48 tolerated(0.55) benign(0.003) TCGA-58-A46M-01 6 10924836 10924836 T A SYCP2L Missense_Mutation p.S394T 0.38 tolerated(1) benign(0.057) TCGA-58-A46M-01 6 110113814 110113814 T C FIG4 Silent p.Y802Y 0.25 TCGA-58-A46M-01 6 131944534 131944534 G A MED23 Missense_Mutation p.T118I 0.33 deleterious(0.04) benign(0.272) TCGA-58-A46M-01 6 132892150 132892150 G T TAAR6 Missense_Mutation p.K230N 0.34 tolerated(0.08) possibly_damaging(0.457) TCGA-58-A46M-01 6 133055695 133055695 G T VNN3 Nonsense_Mutation p.S46* 0.19 TCGA-58-A46M-01 6 133055730 133055731 - ATG VNN3 In_Frame_Ins p.A34_V35insM 0.27 TCGA-58-A46M-01 6 146625911 146625911 G - GRM1 Frame_Shift_Del p.W372Cfs*29 0.23 TCGA-58-A46M-01 6 153043242 153043242 C T MYCT1 Missense_Mutation p.P188S 0.26 tolerated(0.12) benign(0.27) TCGA-58-A46M-01 6 160468869 160468869 G A IGF2R Missense_Mutation p.A759T 0.21 deleterious(0) probably_damaging(1) TCGA-58-A46M-01 6 16327034 16327034 C A ATXN1 Missense_Mutation p.G503V 0.45 tolerated(0.13) probably_damaging(0.993) TCGA-58-A46M-01 6 16327035 16327035 C A ATXN1 Missense_Mutation p.G503W 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-58-A46M-01 6 24145989 24145989 C T NRSN1 Silent p.L135L 0.36 TCGA-58-A46M-01 6 24174884 24174884 C A DCDC2 3'UTR 0.19 TCGA-58-A46M-01 6 25972185 25972185 G T TRIM38 Missense_Mutation p.W199L 0.21 deleterious(0.01) possibly_damaging(0.855) TCGA-58-A46M-01 6 25972186 25972186 G T TRIM38 Missense_Mutation p.W199C 0.21 tolerated(0.06) benign(0.179) TCGA-58-A46M-01 6 27798997 27798997 A T HIST1H4K Silent p.G103G 0.14 TCGA-58-A46M-01 6 27839956 27839956 G C HIST1H3I Silent p.T46T 0.24 TCGA-58-A46M-01 6 28554249 28554249 G A SCAND3 Silent p.N82N 0.41 TCGA-58-A46M-01 6 29454963 29454963 C T MAS1L Missense_Mutation p.M239I 0.19 tolerated(0.06) benign(0.198) TCGA-58-A46M-01 6 30166501 30166501 G T TRIM26 Missense_Mutation p.S127Y 0.26 deleterious(0) probably_damaging(1) TCGA-58-A46M-01 6 30166576 30166576 C A TRIM26 Missense_Mutation p.C102F 0.44 deleterious(0) probably_damaging(1) TCGA-58-A46M-01 6 32036721 32036721 A G TNXB Missense_Mutation p.I1927T 0.51 benign(0.001) TCGA-58-A46M-01 6 32065191 32065191 C T TNXB Missense_Mutation p.G147S 0.19 probably_damaging(0.994) TCGA-58-A46M-01 6 3850463 3850463 G T FAM50B Nonsense_Mutation p.G140* 0.33 TCGA-58-A46M-01 6 39282787 39282787 C T KCNK16 3'UTR 0.41 TCGA-58-A46M-01 6 41243884 41243884 C T TREM1 Silent p.T228T 0.14 TCGA-58-A46M-01 6 43139907 43139907 G A SRF Silent p.K171K 0.33 TCGA-58-A46M-01 6 49928125 49928125 G C DEFB114 Silent p.T30T 0.22 TCGA-58-A46M-01 6 52053938 52053938 G T IL17A Missense_Mutation p.V106L 0.38 tolerated(1) benign(0.041) TCGA-58-A46M-01 6 55198695 55198695 A G GFRAL Missense_Mutation p.Y90C 0.52 tolerated(0.12) benign(0.345) TCGA-58-A46M-01 6 56464983 56464983 G A DST Missense_Mutation p.L1237F 0.17 probably_damaging(1) TCGA-58-A46M-01 6 70048892 70048892 C A BAI3 Silent p.T1091T 0.24 TCGA-58-A46M-01 6 72960033 72960033 G A RIMS1 Missense_Mutation p.V748M 0.29 deleterious(0) probably_damaging(0.994) TCGA-58-A46M-01 6 75899094 75899095 - C COL12A1 Frame_Shift_Ins p.D221Gfs*4 0.14 TCGA-58-A46M-01 6 80626559 80626559 A T ELOVL4 Silent p.L237L 0.10 TCGA-58-A46M-01 6 80749470 80749470 G T TTK Missense_Mutation p.G730W 0.28 deleterious(0) probably_damaging(1) TCGA-58-A46M-01 6 86332313 86332313 C A SYNCRIP Missense_Mutation p.A299S 0.20 deleterious(0) probably_damaging(0.955) TCGA-58-A46M-01 6 88775979 88775979 G C SPACA1 Missense_Mutation p.D271H 0.45 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-58-A46M-01 6 96988426 96988426 C G UFL1 Missense_Mutation p.P392A 0.23 tolerated(0.08) probably_damaging(0.983) TCGA-58-A46M-01 7 100849489 100849489 C G PLOD3 3'UTR 0.21 TCGA-58-A46M-01 7 107434993 107434993 T C SLC26A3 5'UTR 0.42 TCGA-58-A46M-01 7 11446097 11446097 G A THSD7A Missense_Mutation p.A1356V 0.69 tolerated(0.19) probably_damaging(0.992) TCGA-58-A46M-01 7 117501326 117501326 C T CTTNBP2 Silent p.R42R 0.29 TCGA-58-A46M-01 7 133160195 133160195 G A EXOC4 Silent p.K432K 0.10 TCGA-58-A46M-01 7 137270035 137270035 C T DGKI Missense_Mutation p.V495I 0.67 deleterious(0.05) probably_damaging(0.997) TCGA-58-A46M-01 7 137686378 137686378 C A CREB3L2 Missense_Mutation p.G25V 0.50 tolerated(0.3) benign(0.086) TCGA-58-A46M-01 7 137686379 137686379 C A CREB3L2 Missense_Mutation p.G25W 0.46 deleterious(0.01) possibly_damaging(0.698) TCGA-58-A46M-01 7 142651444 142651444 G A KEL Silent p.L251L 0.18 TCGA-58-A46M-01 7 142919283 142919283 T C TAS2R40 Missense_Mutation p.F38L 0.19 deleterious(0.02) benign(0.327) TCGA-58-A46M-01 7 143095944 143095944 C T EPHA1 Silent p.Q362Q 0.13 TCGA-58-A46M-01 7 143096873 143096873 G A EPHA1 Missense_Mutation p.R236W 0.27 deleterious(0.03) benign(0.394) TCGA-58-A46M-01 7 151877198 151877198 C A KMT2C Missense_Mutation p.R2388L 0.17 probably_damaging(0.999) TCGA-58-A46M-01 7 154738093 154738093 T G PAXIP1 Missense_Mutation p.Q1059P 0.44 deleterious(0) unknown(0) TCGA-58-A46M-01 7 24727325 24727325 G T MPP6 3'UTR 0.12 TCGA-58-A46M-01 7 25163395 25163395 C A CYCS Missense_Mutation p.M81I 0.45 tolerated(0.09) benign(0.146) TCGA-58-A46M-01 7 2566520 2566520 G A LFNG Silent p.V346V 0.07 TCGA-58-A46M-01 7 26778414 26778414 C A SKAP2 Missense_Mutation p.D157Y 0.65 deleterious(0) probably_damaging(1) TCGA-58-A46M-01 7 35284660 35284660 C T TBX20 Silent p.V185V 0.58 TCGA-58-A46M-01 7 40134472 40134472 G A CDK13 Missense_Mutation p.G1478R 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-58-A46M-01 7 66237064 66237064 C T RABGEF1 Nonsense_Mutation p.R60* 0.47 TCGA-58-A46M-01 7 74565095 74565095 G A GTF2IRD2B Missense_Mutation p.A948T 0.28 tolerated(0.08) benign(0.001) TCGA-58-A46M-01 7 83591025 83591025 G A SEMA3A Missense_Mutation p.L660F 0.14 deleterious(0) possibly_damaging(0.894) TCGA-58-A46M-01 7 8791410 8791410 G T NXPH1 3'UTR 0.14 TCGA-58-A46M-01 7 91643586 91643586 C T AKAP9 Silent p.L1186L 0.29 TCGA-58-A46M-01 7 92987701 92987701 C T CCDC132 Nonsense_Mutation p.Q950* 0.24 TCGA-58-A46M-01 7 94047823 94047823 C A COL1A2 Missense_Mutation p.L662I 0.60 unknown(0) TCGA-58-A46M-01 7 94540643 94540643 G A PPP1R9A Silent p.V406V 0.14 TCGA-58-A46M-01 7 97991669 97991669 C A BAIAP2L1 Missense_Mutation p.A43S 0.11 tolerated(0.36) probably_damaging(0.96) TCGA-58-A46M-01 8 108913226 108913226 A T RSPO2 3'UTR 0.42 TCGA-58-A46M-01 8 109797271 109797271 C T TMEM74 Silent p.R19R 0.45 TCGA-58-A46M-01 8 110477134 110477134 T C PKHD1L1 Silent p.P2691P 0.22 TCGA-58-A46M-01 8 113256635 113256635 G A CSMD3 Missense_Mutation p.P3464S 0.10 deleterious(0) possibly_damaging(0.456) TCGA-58-A46M-01 8 113326197 113326197 A G CSMD3 Missense_Mutation p.V2545A 0.20 tolerated(0.11) benign(0.156) TCGA-58-A46M-01 8 12957815 12957815 C G DLC1 Missense_Mutation p.K677N 0.43 deleterious(0) possibly_damaging(0.58) TCGA-58-A46M-01 8 139164965 139164965 A T FAM135B Missense_Mutation p.Y585N 0.22 tolerated(0.37) benign(0) TCGA-58-A46M-01 8 139707104 139707104 C A COL22A1 Nonsense_Mutation p.G871* 0.15 TCGA-58-A46M-01 8 143958261 143958261 A G CYP11B1 Silent p.V212V 0.20 TCGA-58-A46M-01 8 144940285 144940285 G A EPPK1 Silent p.P2379P 0.08 TCGA-58-A46M-01 8 21767283 21767283 T A DOK2 Missense_Mutation p.I260F 0.42 tolerated(0.13) benign(0.07) TCGA-58-A46M-01 8 36766906 36766906 G A KCNU1 Silent p.P728P 0.10 TCGA-58-A46M-01 8 38884300 38884300 A C ADAM9 Silent p.A367A 0.10 TCGA-58-A46M-01 8 39626962 39626962 A T ADAM2 Nonsense_Mutation p.C387* 0.19 TCGA-58-A46M-01 8 42611048 42611048 C T CHRNA6 Missense_Mutation p.V432M 0.52 deleterious(0) probably_damaging(0.962) TCGA-58-A46M-01 8 53569389 53569389 T A RB1CC1 Silent p.I1000I 0.16 TCGA-58-A46M-01 8 56435928 56435928 G A XKR4 Silent p.K365K 0.26 TCGA-58-A46M-01 8 61139449 61139449 G T CA8 Missense_Mutation p.Q187K 0.26 tolerated(0.64) benign(0.022) TCGA-58-A46M-01 8 68102929 68102929 C T CSPP1 Missense_Mutation p.P1084S 0.13 tolerated(0.22) benign(0.234) TCGA-58-A46M-01 8 77766582 77766582 G T ZFHX4 Silent p.L2475L 0.19 TCGA-58-A46M-01 8 87076735 87076735 G A PSKH2 Missense_Mutation p.A104V 0.59 tolerated(0.86) benign(0.011) TCGA-58-A46M-01 8 89053699 89053699 T A MMP16 Missense_Mutation p.E605V 0.46 deleterious(0) probably_damaging(1) TCGA-58-A46M-01 8 89086858 89086858 G T MMP16 Missense_Mutation p.S399R 0.15 tolerated(0.36) benign(0.029) TCGA-58-A46M-01 8 95539055 95539055 C A KIAA1429 Nonsense_Mutation p.G473* 0.17 TCGA-58-A46M-01 8 95539565 95539565 T A KIAA1429 Missense_Mutation p.S303C 0.41 deleterious(0) probably_damaging(0.999) TCGA-58-A46M-01 9 112969887 112969887 C T C9orf152 5'UTR 0.80 TCGA-58-A46M-01 9 116299112 116299112 C T RGS3 Nonsense_Mutation p.Q651* 0.60 TCGA-58-A46M-01 9 119204796 119204796 G C ASTN2 Missense_Mutation p.H1127Q 0.64 deleterious(0.05) unknown(0) TCGA-58-A46M-01 9 125240177 125240177 G A OR1J1 Missense_Mutation p.S10F 0.16 deleterious_low_confidence(0.02) benign(0.003) TCGA-58-A46M-01 9 135985780 135985780 C A RALGDS Missense_Mutation p.A131S 0.74 tolerated(0.07) probably_damaging(0.971) TCGA-58-A46M-01 9 137630318 137630318 A C COL5A1 Splice_Site p.X464_splice 0.57 TCGA-58-A46M-01 9 139756777 139756777 C T EDF1 Missense_Mutation p.D136N 0.22 tolerated(0.27) benign(0.004) TCGA-58-A46M-01 9 14720352 14720352 A T CER1 Silent p.V180V 0.63 TCGA-58-A46M-01 9 20986285 20986285 A C FOCAD Splice_Site p.X1577_splice 0.36 TCGA-58-A46M-01 9 21187115 21187115 G A IFNA4 Missense_Mutation p.S139F 0.65 deleterious(0.02) possibly_damaging(0.683) TCGA-58-A46M-01 9 5080569 5080569 G C JAK2 Missense_Mutation p.A774P 0.75 tolerated(0.19) probably_damaging(0.992) TCGA-58-A46M-01 9 71114215 71114215 A T PGM5 Missense_Mutation p.T518S 0.34 deleterious(0) probably_damaging(0.935) TCGA-58-A46M-01 9 71862959 71862959 G A TJP2 Missense_Mutation p.R931H 0.12 tolerated(0.1) benign(0.171) TCGA-58-A46M-01 9 74489994 74489994 C T ABHD17B Translation_Start_Site p.M1? 0.13 deleterious_low_confidence(0) benign(0.216) TCGA-58-A46M-01 9 77613619 77613619 G C C9orf41 Missense_Mutation p.Q269E 0.12 deleterious(0) possibly_damaging(0.845) TCGA-58-A46M-01 9 80409408 80409408 C T GNAQ Missense_Mutation p.D236N 0.55 deleterious(0.01) probably_damaging(0.999) TCGA-58-A46M-01 9 90321989 90321989 G T DAPK1 Missense_Mutation p.G1335C 0.28 deleterious(0) probably_damaging(0.998) TCGA-58-A46M-01 9 92220055 92220055 C A GADD45G Missense_Mutation p.R7S 0.30 tolerated(0.43) benign(0.006) TCGA-58-A46M-01 9 98011460 98011460 C A FANCC Silent p.V38V 0.48 TCGA-58-A46M-01 X 114400847 114400847 T A LRCH2 Missense_Mutation p.N353Y 0.67 deleterious(0) probably_damaging(0.971) TCGA-58-A46M-01 X 119581714 119581714 C T LAMP2 Silent p.L241L 0.21 TCGA-58-A46M-01 X 12736700 12736700 C T FRMPD4 Missense_Mutation p.S1252F 0.28 deleterious_low_confidence(0) possibly_damaging(0.759) TCGA-58-A46M-01 X 13801530 13801530 T G GPM6B Missense_Mutation p.H160P 0.61 tolerated(0.07) possibly_damaging(0.745) TCGA-58-A46M-01 X 139866114 139866114 C A CDR1 Nonsense_Mutation p.G140* 0.64 TCGA-58-A46M-01 X 1404787 1404789 AAG - CSF2RA In_Frame_Del p.K66del 0.51 TCGA-58-A46M-01 X 1407463 1407463 G A CSF2RA Missense_Mutation p.G91R 0.50 deleterious(0) probably_damaging(0.996) TCGA-58-A46M-01 X 142718857 142718857 G T SLITRK4 Nonsense_Mutation p.S23* 0.63 TCGA-58-A46M-01 X 153222829 153222829 G A HCFC1 Silent p.P763P 0.30 TCGA-58-A46M-01 X 35984719 35984719 T C CXorf22 Missense_Mutation p.V483A 0.63 tolerated(0.16) benign(0.023) TCGA-58-A46M-01 X 37029307 37029307 T A FAM47C Missense_Mutation p.Y942N 0.34 deleterious(0.01) possibly_damaging(0.901) TCGA-58-A46M-01 X 45013332 45013332 C A CXorf36 Missense_Mutation p.D262Y 0.54 deleterious(0) possibly_damaging(0.807) TCGA-58-A46M-01 X 51076079 51076079 G C NUDT10 Missense_Mutation p.D88H 0.09 tolerated(0.07) possibly_damaging(0.815) TCGA-58-A46M-01 X 69497268 69497268 G A ARR3 Silent p.R166R 0.42 TCGA-58-A46M-01 X 86887323 86887323 G A KLHL4 Missense_Mutation p.V480I 0.85 tolerated(0.25) benign(0.028) TCGA-58-A46M-01 X 91090407 91090407 G A PCDH11X 5'UTR 0.66 TCGA-58-A46N-01 10 55944966 55944966 C G PCDH15 Missense_Mutation p.Q456H 0.06 tolerated(0.11) possibly_damaging(0.796) TCGA-58-A46N-01 10 71129067 71129067 G A HK1 Silent p.Q226Q 0.70 TCGA-58-A46N-01 10 93841118 93841118 C T CPEB3 Missense_Mutation p.A610T 0.76 deleterious(0) probably_damaging(0.938) TCGA-58-A46N-01 11 123756073 123756073 G T TMEM225 Silent p.A20A 0.77 TCGA-58-A46N-01 11 124792641 124792641 C A HEPACAM Missense_Mutation p.A293S 0.78 tolerated_low_confidence(0.48) benign(0.034) TCGA-58-A46N-01 11 1263456 1263456 C A MUC5B Silent p.T1782T 0.13 TCGA-58-A46N-01 11 20648383 20648383 G A SLC6A5 Missense_Mutation p.A464T 0.79 deleterious(0) possibly_damaging(0.824) TCGA-58-A46N-01 11 55405888 55405888 A G OR4P4 Missense_Mutation p.K19E 0.86 tolerated(0.21) benign(0.103) TCGA-58-A46N-01 11 60184209 60184209 C A MS4A14 Missense_Mutation p.Q623K 0.87 tolerated(0.22) benign(0.057) TCGA-58-A46N-01 11 60229940 60229940 C A MS4A1 Missense_Mutation p.F31L 0.79 tolerated(0.66) benign(0) TCGA-58-A46N-01 11 64366293 64366293 C T SLC22A12 Missense_Mutation p.A323V 0.71 tolerated(0.13) possibly_damaging(0.744) TCGA-58-A46N-01 11 65273816 65273816 A G MALAT1 RNA 0.86 TCGA-58-A46N-01 11 70017009 70017009 C T ANO1 Silent p.F738F 0.67 TCGA-58-A46N-01 11 74716855 74716855 T A NEU3 Missense_Mutation p.M235K 0.78 tolerated(0.07) possibly_damaging(0.872) TCGA-58-A46N-01 12 105600862 105600862 T A APPL2 Missense_Mutation p.M206L 0.49 tolerated(0.94) benign(0.007) TCGA-58-A46N-01 12 10783766 10783766 C G STYK1 Missense_Mutation p.R110P 0.36 deleterious(0) probably_damaging(0.999) TCGA-58-A46N-01 12 109182113 109182113 C T SSH1 Missense_Mutation p.R934Q 0.43 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-58-A46N-01 12 111353543 111353543 G T MYL2 Missense_Mutation p.L49M 0.46 deleterious(0) probably_damaging(0.982) TCGA-58-A46N-01 12 11506832 11506832 G C PRB1 Missense_Mutation p.Q69E 0.03 deleterious_low_confidence(0.03) unknown(0) TCGA-58-A46N-01 12 11546885 11546885 C G PRB2 Missense_Mutation p.G43R 0.44 deleterious_low_confidence(0.01) unknown(0) TCGA-58-A46N-01 12 117768548 117768548 G A NOS1 Silent p.T109T 0.36 TCGA-58-A46N-01 12 124379190 124379190 G T DNAH10 Missense_Mutation p.G2949V 0.45 probably_damaging(0.999) TCGA-58-A46N-01 12 15677825 15677825 A G PTPRO Missense_Mutation p.T657A 0.45 tolerated(0.51) benign(0.002) TCGA-58-A46N-01 12 24365402 24365402 C A MIR920 RNA 0.40 TCGA-58-A46N-01 12 24365403 24365403 C A MIR920 RNA 0.43 TCGA-58-A46N-01 12 60098619 60098619 C A SLC16A7 Missense_Mutation p.P13T 0.59 deleterious(0.01) unknown(0) TCGA-58-A46N-01 12 67688839 67688839 A - CAND1 Frame_Shift_Del p.K133Rfs*10 0.44 TCGA-58-A46N-01 12 7522145 7522145 C A CD163L1 Missense_Mutation p.V1283L 0.46 deleterious(0) probably_damaging(0.983) TCGA-58-A46N-01 12 9021137 9021137 G A A2ML1 Missense_Mutation p.V1356M 0.35 deleterious(0.01) possibly_damaging(0.85) TCGA-58-A46N-01 12 9313704 9313704 C A PZP Missense_Mutation p.V933L 0.42 tolerated(0.22) benign(0.004) TCGA-58-A46N-01 13 114149847 114149847 G A TMCO3 5'UTR 0.55 TCGA-58-A46N-01 13 28542708 28542708 C T CDX2 Missense_Mutation p.G146R 1.00 tolerated(0.39) benign(0.097) TCGA-58-A46N-01 13 39918190 39918190 C T LHFP Silent p.G162G 0.82 TCGA-58-A46N-01 13 45533655 45533655 G T NUFIP1 Silent p.G294G 0.76 TCGA-58-A46N-01 13 70314641 70314641 C A KLHL1 Missense_Mutation p.G563C 0.79 deleterious(0) probably_damaging(1) TCGA-58-A46N-01 13 78475253 78475253 G - EDNRB Frame_Shift_Del p.C388Vfs*4 0.40 TCGA-58-A46N-01 14 19553425 19553425 T A POTEG Silent p.A3A 0.30 TCGA-58-A46N-01 14 20344859 20344859 G T OR4K2 Missense_Mutation p.V145L 0.04 tolerated(0.16) benign(0.129) TCGA-58-A46N-01 14 22363184 22363184 G C TRAV8-4 Silent p.A105A 0.43 TCGA-58-A46N-01 14 22447355 22447355 G T TRAV8-6 Silent p.V112V 0.43 TCGA-58-A46N-01 14 42356553 42356553 T A LRFN5 Nonsense_Mutation p.L242* 0.51 TCGA-58-A46N-01 14 47504263 47504263 A G MDGA2 Silent p.N590N 0.34 TCGA-58-A46N-01 14 50269287 50269287 T C NEMF Missense_Mutation p.D660G 0.38 deleterious(0) benign(0.358) TCGA-58-A46N-01 14 74036269 74036269 C G ACOT2 Missense_Mutation p.Q109E 0.41 tolerated(0.19) benign(0.005) TCGA-58-A46N-01 14 74425926 74425926 C T COQ6 Missense_Mutation p.P261L 0.67 deleterious(0) probably_damaging(1) TCGA-58-A46N-01 14 77732784 77732784 C A NGB 3'UTR 0.41 TCGA-58-A46N-01 14 77732785 77732785 C A NGB 3'UTR 0.42 TCGA-58-A46N-01 14 79423632 79423632 G T NRXN3 Nonsense_Mutation p.E402* 0.39 TCGA-58-A46N-01 14 88651887 88651887 T A KCNK10 Nonsense_Mutation p.R542* 0.46 TCGA-58-A46N-01 14 91770051 91770051 C A CCDC88C Missense_Mutation p.G1210V 0.54 tolerated(0.1) benign(0.197) TCGA-58-A46N-01 14 92469766 92469766 T C TRIP11 Silent p.E1518E 0.48 TCGA-58-A46N-01 14 92920310 92920310 C G SLC24A4 Missense_Mutation p.P316R 0.28 deleterious(0.03) probably_damaging(0.98) TCGA-58-A46N-01 14 94754775 94754775 G C SERPINA10 Missense_Mutation p.D280E 0.41 deleterious(0) probably_damaging(1) TCGA-58-A46N-01 14 94770839 94770839 A T SERPINA6 Silent p.R378R 0.09 TCGA-58-A46N-01 15 24922328 24922328 C A NPAP1 Silent p.I438I 0.76 TCGA-58-A46N-01 15 24922329 24922329 C A NPAP1 Missense_Mutation p.L439M 0.76 tolerated(0.16) probably_damaging(0.976) TCGA-58-A46N-01 15 25616150 25616150 C T UBE3A Missense_Mutation p.E394K 0.80 tolerated(0.52) benign(0.01) TCGA-58-A46N-01 15 27114338 27114338 G T GABRA5 5'UTR 0.75 TCGA-58-A46N-01 15 65497732 65497732 C A CILP Missense_Mutation p.G166V 0.77 deleterious(0) probably_damaging(0.963) TCGA-58-A46N-01 15 65497744 65497744 G A CILP Missense_Mutation p.S162L 0.81 deleterious(0.03) benign(0.02) TCGA-58-A46N-01 15 89398799 89398799 C A ACAN Missense_Mutation p.L995I 0.56 tolerated(0.24) benign(0.109) TCGA-58-A46N-01 16 1995618 1995618 G A RPL3L Missense_Mutation p.S350F 0.69 deleterious(0.01) benign(0.115) TCGA-58-A46N-01 16 57552044 57552045 - GCC CCDC102A In_Frame_Ins p.R394dup 0.55 TCGA-58-A46N-01 16 71101277 71101277 T C HYDIN Missense_Mutation p.N664S 0.81 probably_damaging(0.969) TCGA-58-A46N-01 16 81077672 81077672 A T ATMIN Silent p.S523S 0.79 TCGA-58-A46N-01 17 10304416 10304416 T C MYH8 Silent p.E1067E 0.75 TCGA-58-A46N-01 17 10415489 10415489 G C MYH1 Missense_Mutation p.L390V 0.81 deleterious(0) benign(0.078) TCGA-58-A46N-01 17 36482294 36482294 A G GPR179 3'UTR 0.46 TCGA-58-A46N-01 17 38453013 38453013 T C CDC6 Missense_Mutation p.S415P 0.43 tolerated(0.4) benign(0.005) TCGA-58-A46N-01 17 43545896 43545896 T G PLEKHM1 Missense_Mutation p.E329D 0.39 tolerated(0.31) benign(0.002) TCGA-58-A46N-01 17 47117434 47117434 G A IGF2BP1 Missense_Mutation p.E267K 0.37 deleterious(0) possibly_damaging(0.468) TCGA-58-A46N-01 17 57287403 57287403 G T SMG8 5'UTR 0.38 TCGA-58-A46N-01 17 6376149 6376149 T C PITPNM3 Splice_Site p.X420_splice 0.88 TCGA-58-A46N-01 17 75398571 75398571 C T SEPT9 Silent p.A169A 0.56 TCGA-58-A46N-01 17 7577058 7577058 C A TP53 Nonsense_Mutation p.E294* 0.84 TCGA-58-A46N-01 17 79411731 79411731 C G RP11-1055B8.7 Silent p.P850P 0.10 TCGA-58-A46N-01 18 3112301 3112301 C T MYOM1 Missense_Mutation p.R1138H 0.21 tolerated(0.07) benign(0.052) TCGA-58-A46N-01 18 31323010 31323010 C G ASXL3 Silent p.A1066A 0.43 TCGA-58-A46N-01 18 31538338 31538338 C A NOL4 Missense_Mutation p.E367D 0.44 tolerated(0.09) probably_damaging(0.994) TCGA-58-A46N-01 18 50731637 50731637 C T DCC Missense_Mutation p.T542I 0.33 deleterious(0) possibly_damaging(0.678) TCGA-58-A46N-01 19 10158015 10158015 T A C3P1 RNA 0.45 TCGA-58-A46N-01 19 16060096 16060096 C T OR10H4 Silent p.I93I 0.39 TCGA-58-A46N-01 19 22362713 22362713 T A ZNF676 3'UTR 0.41 TCGA-58-A46N-01 19 22784217 22784217 C G AC011467.1 5'Flank 0.29 TCGA-58-A46N-01 19 30477293 30477293 G C URI1 Missense_Mutation p.Q112H 0.42 deleterious(0.02) possibly_damaging(0.854) TCGA-58-A46N-01 19 35660490 35660490 C T FXYD5 Missense_Mutation p.S170F 0.34 deleterious(0.04) probably_damaging(0.995) TCGA-58-A46N-01 19 36168754 36168754 C A UPK1A Missense_Mutation p.T230K 0.35 deleterious(0.02) probably_damaging(0.954) TCGA-58-A46N-01 19 36230913 36230913 G A IGFLR1 Missense_Mutation p.S140L 0.51 deleterious(0.02) benign(0.004) TCGA-58-A46N-01 19 36430594 36430594 C T LRFN3 Silent p.S89S 0.45 TCGA-58-A46N-01 19 38861487 38861487 T C CATSPERG 3'UTR 0.46 TCGA-58-A46N-01 19 42729858 42729858 C T ZNF526 Missense_Mutation p.P435S 0.59 tolerated(0.29) benign(0.129) TCGA-58-A46N-01 19 43097839 43097839 G A CEACAM8 Missense_Mutation p.P93L 0.47 deleterious(0.05) probably_damaging(0.921) TCGA-58-A46N-01 19 4537979 4537979 C A LRG1 Silent p.T339T 0.35 TCGA-58-A46N-01 19 45801006 45801006 C T MARK4 Silent p.S557S 0.32 TCGA-58-A46N-01 19 49993935 49993935 A G RPL13A Intron 0.38 TCGA-58-A46N-01 19 50169207 50169207 G T BCL2L12 Missense_Mutation p.G43C 0.47 tolerated_low_confidence(0.1) possibly_damaging(0.597) TCGA-58-A46N-01 19 5082474 5082474 G T KDM4B Missense_Mutation p.A293S 0.31 possibly_damaging(0.878) TCGA-58-A46N-01 19 50958773 50958773 C A MYBPC2 Missense_Mutation p.T737K 0.38 deleterious(0.01) probably_damaging(0.963) TCGA-58-A46N-01 19 51379911 51379911 C T KLK2 Silent p.A130A 0.07 TCGA-58-A46N-01 19 52619303 52619303 G C ZNF616 Missense_Mutation p.R372G 0.40 deleterious(0.04) benign(0.018) TCGA-58-A46N-01 19 53571634 53571634 G A ZNF160 Missense_Mutation p.S718L 0.38 deleterious(0.03) possibly_damaging(0.879) TCGA-58-A46N-01 19 53945217 53945217 A G TPM3P9 RNA 0.27 TCGA-58-A46N-01 19 541489 541489 G T CDC34 Silent p.V216V 0.38 TCGA-58-A46N-01 19 54496073 54496073 C A CACNG6 5'UTR 0.57 TCGA-58-A46N-01 19 54697244 54697244 G A TSEN34 3'UTR 0.09 TCGA-58-A46N-01 19 54782376 54782376 G T LILRB2 Silent p.G332G 0.52 TCGA-58-A46N-01 19 56368967 56368967 A T NLRP4 Intron 0.43 TCGA-58-A46N-01 19 57802241 57802241 C G ZNF460 Missense_Mutation p.T111R 0.38 tolerated(0.42) benign(0.003) TCGA-58-A46N-01 19 5866633 5866633 G A FUT5 Silent p.S368S 0.49 TCGA-58-A46N-01 19 8181621 8181621 C A FBN3 Missense_Mutation p.G1217W 0.47 deleterious(0) probably_damaging(0.998) TCGA-58-A46N-01 19 9072782 9072782 C A MUC16 Missense_Mutation p.E4888D 0.43 unknown(0) TCGA-58-A46N-01 1 101705104 101705104 G C S1PR1 Silent p.L188L 0.72 TCGA-58-A46N-01 1 154002422 154002422 C T NUP210L Missense_Mutation p.G1269R 0.47 tolerated(0.06) benign(0.157) TCGA-58-A46N-01 1 155884146 155884146 C A KIAA0907 Intron 0.45 TCGA-58-A46N-01 1 157559075 157559075 C G FCRL4 Missense_Mutation p.E76Q 0.40 tolerated(0.44) benign(0.088) TCGA-58-A46N-01 1 158644427 158644427 C A SPTA1 Missense_Mutation p.G384V 0.38 tolerated(0.33) probably_damaging(0.968) TCGA-58-A46N-01 1 160388842 160388842 C G VANGL2 Missense_Mutation p.H81Q 0.30 tolerated(0.48) possibly_damaging(0.492) TCGA-58-A46N-01 1 171085389 171085389 A T FMO3 Missense_Mutation p.I409F 0.38 deleterious(0.01) probably_damaging(0.952) TCGA-58-A46N-01 1 175046825 175046825 C A TNN Missense_Mutation p.R91S 0.44 deleterious(0) possibly_damaging(0.899) TCGA-58-A46N-01 1 175299267 175299267 C A TNR Missense_Mutation p.V1246F 0.39 deleterious(0) possibly_damaging(0.471) TCGA-58-A46N-01 1 176668395 176668395 G T PAPPA2 Missense_Mutation p.W969L 0.43 deleterious(0) probably_damaging(0.999) TCGA-58-A46N-01 1 190203530 190203530 C G BRINP3 Missense_Mutation p.Q232H 0.45 tolerated(0.35) benign(0.003) TCGA-58-A46N-01 1 201286774 201286774 G T PKP1 Silent p.A307A 0.40 TCGA-58-A46N-01 1 201817519 201817519 A G IPO9 Splice_Site p.X105_splice 0.40 TCGA-58-A46N-01 1 20304911 20304911 G A PLA2G2A Silent p.G49G 0.67 TCGA-58-A46N-01 1 207872609 207872609 A C CR1L Silent p.P406P 0.39 TCGA-58-A46N-01 1 208211796 208211796 G C PLXNA2 Missense_Mutation p.R1562G 0.38 deleterious(0) probably_damaging(0.99) TCGA-58-A46N-01 1 211545541 211545541 G A TRAF5 Missense_Mutation p.E391K 0.37 deleterious(0.01) probably_damaging(0.988) TCGA-58-A46N-01 1 21553655 21553655 G A ECE1 Nonsense_Mutation p.Q616* 0.73 TCGA-58-A46N-01 1 215931936 215931936 C A USH2A Splice_Site p.X3797_splice 0.51 TCGA-58-A46N-01 1 222717388 222717388 G A HHIPL2 Silent p.R155R 0.43 TCGA-58-A46N-01 1 228528861 228528861 C T OBSCN Silent p.H6878H 0.33 TCGA-58-A46N-01 1 236647601 236647601 C T EDARADD 3'Flank 0.57 TCGA-58-A46N-01 1 237947262 237947262 G A RYR2 Missense_Mutation p.V4084I 0.35 possibly_damaging(0.865) TCGA-58-A46N-01 1 240969590 240969590 A C RGS7 Silent p.P373P 0.43 TCGA-58-A46N-01 1 248059550 248059550 T A OR2W3 Missense_Mutation p.I221N 0.36 deleterious(0) probably_damaging(0.998) TCGA-58-A46N-01 1 248084452 248084452 C T OR2T8 Missense_Mutation p.L45F 0.37 tolerated(0.35) benign(0.071) TCGA-58-A46N-01 1 248128766 248128766 G A OR2AK2 Missense_Mutation p.V45I 0.46 tolerated(0.27) benign(0.014) TCGA-58-A46N-01 1 248525921 248525921 A T OR2T4 Missense_Mutation p.M347L 0.42 tolerated_low_confidence(0.21) benign(0) TCGA-58-A46N-01 1 248616860 248616860 G A OR2T2 Silent p.G254G 0.32 TCGA-58-A46N-01 1 26694189 26694189 C A ZNF683 Missense_Mutation p.A72S 0.75 tolerated(0.45) benign(0.046) TCGA-58-A46N-01 1 34038130 34038130 G A CSMD2 Missense_Mutation p.R2582C 0.85 tolerated(0.06) possibly_damaging(0.505) TCGA-58-A46N-01 1 46106068 46106068 C T GPBP1L1 Silent p.P186P 0.70 TCGA-58-A46N-01 1 60139750 60139750 T C FGGY Missense_Mutation p.L510P 0.80 deleterious(0) probably_damaging(0.994) TCGA-58-A46N-01 20 1115883 1115883 C A PSMF1 Missense_Mutation p.T162N 0.76 tolerated(0.56) benign(0.002) TCGA-58-A46N-01 20 34092034 34092034 G A CEP250 Missense_Mutation p.R1946Q 0.86 benign(0.022) TCGA-58-A46N-01 20 36022611 36022617 GAGCGGT - SRC Frame_Shift_Del p.E162Yfs*39 0.64 TCGA-58-A46N-01 20 52198694 52198694 T C ZNF217 Silent p.L224L 0.80 TCGA-58-A46N-01 20 61943079 61943079 C T COL20A1 Missense_Mutation p.R548W 0.44 tolerated(0.18) possibly_damaging(0.772) TCGA-58-A46N-01 20 62198384 62198384 C T HELZ2 Missense_Mutation p.R776Q 0.10 tolerated(0.91) benign(0.041) TCGA-58-A46N-01 21 31971018 31971018 C A KRTAP6-2 Missense_Mutation p.G59V 0.70 unknown(0) TCGA-58-A46N-01 21 38117355 38117355 G T SIM2 Silent p.V498V 0.85 TCGA-58-A46N-01 21 43833234 43833234 C G UBASH3A Silent p.S152S 0.74 TCGA-58-A46N-01 21 47422573 47422573 G A COL6A1 Missense_Mutation p.E795K 0.74 deleterious(0.02) probably_damaging(0.932) TCGA-58-A46N-01 21 47544624 47544624 C A COL6A2 Silent p.P577P 0.79 TCGA-58-A46N-01 22 19789646 19789646 T G GNB1L Missense_Mutation p.I204L 0.38 tolerated(1) benign(0) TCGA-58-A46N-01 22 22892734 22892734 C A PRAME Missense_Mutation p.D123Y 0.37 deleterious(0) probably_damaging(0.995) TCGA-58-A46N-01 22 23956382 23956382 C T C22orf43 Silent p.L187L 0.41 TCGA-58-A46N-01 22 24564471 24564471 G A CABIN1 Silent p.G1913G 0.46 TCGA-58-A46N-01 22 32934044 32934044 C A SYN3 Nonsense_Mutation p.E324* 0.38 TCGA-58-A46N-01 22 37915062 37915062 G C CARD10 Missense_Mutation p.P49R 0.23 deleterious(0) probably_damaging(0.997) TCGA-58-A46N-01 22 41175091 41175091 C T SLC25A17 Missense_Mutation p.V125I 0.07 deleterious(0.01) probably_damaging(0.983) TCGA-58-A46N-01 2 130738543 130738543 A G RAB6C 3'UTR 0.26 TCGA-58-A46N-01 2 137814509 137814509 T A THSD7B Missense_Mutation p.L220Q 0.44 deleterious(0.02) probably_damaging(0.975) TCGA-58-A46N-01 2 152514512 152514512 T A NEB Missense_Mutation p.R2056S 0.42 possibly_damaging(0.891) TCGA-58-A46N-01 2 1658241 1658241 G T PXDN Missense_Mutation p.T626N 0.53 tolerated(0.15) benign(0.066) TCGA-58-A46N-01 2 174229637 174229637 G T CDCA7 Missense_Mutation p.A272S 0.51 tolerated(0.46) benign(0.038) TCGA-58-A46N-01 2 179412185 179412185 C T TTN Missense_Mutation p.G31390S 0.36 TCGA-58-A46N-01 2 179501288 179501288 G C TTN Missense_Mutation p.D13722E 0.28 TCGA-58-A46N-01 2 179629352 179629352 A - TTN Frame_Shift_Del p.L3297Cfs*2 0.31 TCGA-58-A46N-01 2 183792837 183792853 ATACATACCGCCAGAAA - NCKAP1 Splice_Site p.X1064_splice 0.30 TCGA-58-A46N-01 2 189348171 189348171 G A GULP1 Missense_Mutation p.M14I 0.39 tolerated(1) benign(0.003) TCGA-58-A46N-01 2 192922404 192922404 C A TMEFF2 Splice_Site p.X179_splice 0.06 TCGA-58-A46N-01 2 200820139 200820139 A T TYW5 Missense_Mutation p.F19I 0.50 deleterious(0) probably_damaging(0.987) TCGA-58-A46N-01 2 20240674 20240674 G A LAPTM4A Silent p.Y70Y 0.36 TCGA-58-A46N-01 2 209324685 209324685 G T PTH2R Missense_Mutation p.G327V 0.40 tolerated(0.55) probably_damaging(0.955) TCGA-58-A46N-01 2 219549949 219549949 C A STK36 Missense_Mutation p.Q460K 0.27 tolerated(0.06) possibly_damaging(0.574) TCGA-58-A46N-01 2 219678852 219678852 C T CYP27A1 Nonsense_Mutation p.Q376* 0.42 TCGA-58-A46N-01 2 219873845 219873845 T A CCDC108 Missense_Mutation p.H1533L 0.41 deleterious(0.03) benign(0.043) TCGA-58-A46N-01 2 233925311 233925311 G C INPP5D Silent p.A41A 0.36 TCGA-58-A46N-01 2 26683602 26683602 G C OTOF Missense_Mutation p.A1909G 0.36 deleterious(0) probably_damaging(0.998) TCGA-58-A46N-01 2 27156160 27156160 G A DPYSL5 Missense_Mutation p.S250N 0.56 deleterious(0) probably_damaging(0.955) TCGA-58-A46N-01 2 3461428 3461428 G C TRAPPC12 Missense_Mutation p.G523R 0.52 deleterious(0.01) possibly_damaging(0.883) TCGA-58-A46N-01 2 44021841 44021841 A T DYNC2LI1 Intron 0.53 TCGA-58-A46N-01 2 44190827 44190827 T C LRPPRC Missense_Mutation p.K463R 0.45 tolerated(0.05) benign(0.226) TCGA-58-A46N-01 2 46070201 46070201 A G PRKCE Silent p.E137E 0.36 TCGA-58-A46N-01 2 53978039 53978039 C A ASB3 Missense_Mutation p.G114V 0.09 deleterious(0) probably_damaging(0.997) TCGA-58-A46N-01 2 90199026 90199026 G T IGKV1D-12 Missense_Mutation p.G63W 0.73 deleterious(0.01) possibly_damaging(0.629) TCGA-58-A46N-01 2 90199027 90199027 G T IGKV1D-12 Missense_Mutation p.G63V 0.73 deleterious(0) probably_damaging(0.925) TCGA-58-A46N-01 2 99227330 99227330 G A UNC50 Missense_Mutation p.V125I 0.39 tolerated(0.1) possibly_damaging(0.728) TCGA-58-A46N-01 3 108156543 108156543 C A MYH15 Nonsense_Mutation p.E1047* 0.26 TCGA-58-A46N-01 3 108156545 108156545 A G MYH15 Missense_Mutation p.L1046P 0.25 deleterious(0) probably_damaging(0.987) TCGA-58-A46N-01 3 118623600 118623600 C G IGSF11 Missense_Mutation p.G250A 0.29 deleterious(0.05) benign(0.129) TCGA-58-A46N-01 3 122880761 122880761 G A PDIA5 Missense_Mutation p.R505Q 0.23 deleterious(0.01) benign(0.271) TCGA-58-A46N-01 3 125695997 125695997 G T ROPN1B Missense_Mutation p.A129S 0.42 tolerated(0.98) benign(0.012) TCGA-58-A46N-01 3 126571573 126571573 G A CHCHD6 Silent p.K165K 0.29 TCGA-58-A46N-01 3 130293054 130293054 C A COL6A6 Missense_Mutation p.H1078N 0.35 tolerated(0.3) probably_damaging(0.998) TCGA-58-A46N-01 3 154027604 154027604 T G DHX36 Silent p.V217V 0.26 TCGA-58-A46N-01 3 170150550 170150550 C A CLDN11 3'UTR 0.25 TCGA-58-A46N-01 3 186510312 186510312 A G RFC4 Silent p.I214I 0.04 TCGA-58-A46N-01 3 188592307 188592307 A G LPP 3'UTR 0.24 TCGA-58-A46N-01 4 94750297 94750297 A G ATOH1 Missense_Mutation p.T74A 0.79 tolerated(0.83) benign(0.005) TCGA-58-A46N-01 5 178552010 178552010 G T ADAMTS2 Silent p.L974L 0.77 TCGA-58-A46N-01 5 23524626 23524626 G TT PRDM9 Frame_Shift_Ins p.M378Ifs*71 0.21 TCGA-58-A46N-01 5 32087360 32087360 C G PDZD2 Missense_Mutation p.A1269G 0.46 tolerated(0.23) benign(0.205) TCGA-58-A46N-01 5 36265072 36265072 T - RANBP3L Frame_Shift_Del p.T182Qfs*13 0.28 TCGA-58-A46N-01 5 37352917 37352917 G A NUP155 Missense_Mutation p.H160Y 0.39 deleterious(0) possibly_damaging(0.611) TCGA-58-A46N-01 5 64769569 64769569 C G ADAMTS6 5'UTR 0.62 TCGA-58-A46N-01 5 76357545 76357545 A G AGGF1 Missense_Mutation p.N621S 0.77 deleterious(0) possibly_damaging(0.876) TCGA-58-A46N-01 6 116784528 116784528 G T FAM26F Missense_Mutation p.S203I 0.75 deleterious(0) probably_damaging(0.999) TCGA-58-A46N-01 6 117113874 117113874 T C GPRC6A Missense_Mutation p.R738G 0.81 tolerated(0.11) benign(0.02) TCGA-58-A46N-01 6 117894704 117894704 G A GOPC Missense_Mutation p.R248C 0.67 deleterious(0) probably_damaging(1) TCGA-58-A46N-01 6 137466775 137466775 C T IL22RA2 Missense_Mutation p.V260M 0.67 deleterious(0.04) possibly_damaging(0.658) TCGA-58-A46N-01 6 150004358 150004358 C G LATS1 Missense_Mutation p.D623H 0.06 deleterious(0.01) possibly_damaging(0.566) TCGA-58-A46N-01 6 28540599 28540599 C G SCAND3 Missense_Mutation p.V1023L 0.92 deleterious(0.01) benign(0.094) TCGA-58-A46N-01 6 32024558 32024558 C A TNXB Missense_Mutation p.V2650F 0.78 probably_damaging(0.918) TCGA-58-A46N-01 6 55266693 55266693 T G GFRAL 3'UTR 0.75 TCGA-58-A46N-01 6 75831054 75831054 C A COL12A1 Silent p.V2350V 0.73 TCGA-58-A46N-01 6 87725808 87725808 T C HTR1E Silent p.P252P 0.77 TCGA-58-A46N-01 7 100849518 100849518 A G PLOD3 3'UTR 0.38 TCGA-58-A46N-01 7 103276867 103276867 T A RELN Silent p.T706T 0.40 TCGA-58-A46N-01 7 11022669 11022669 C T PHF14 Silent p.S261S 0.33 TCGA-58-A46N-01 7 111512584 111512584 G A DOCK4 Missense_Mutation p.P594L 0.33 deleterious(0.03) possibly_damaging(0.566) TCGA-58-A46N-01 7 127958141 127958141 G C RBM28 Missense_Mutation p.L528V 0.42 deleterious(0.03) probably_damaging(0.999) TCGA-58-A46N-01 7 131815147 131815147 C G PLXNA4 3'UTR 0.49 TCGA-58-A46N-01 7 131925825 131925825 G A PLXNA4 Missense_Mutation p.T535I 0.38 tolerated(0.22) benign(0.007) TCGA-58-A46N-01 7 133749169 133749169 G A EXOC4 Missense_Mutation p.G938E 0.46 deleterious(0) probably_damaging(0.983) TCGA-58-A46N-01 7 138967835 138967835 A G UBN2 Silent p.P728P 0.43 TCGA-58-A46N-01 7 1513855 1513855 C T INTS1 Silent p.E1926E 0.32 TCGA-58-A46N-01 7 151932906 151932906 G T KMT2C Missense_Mutation p.P922H 0.07 probably_damaging(0.921) TCGA-58-A46N-01 7 21675624 21675624 C T DNAH11 Silent p.L1551L 0.25 TCGA-58-A46N-01 7 22349700 22349700 G C RAPGEF5 5'UTR 0.41 TCGA-58-A46N-01 7 2420085 2420085 G T EIF3B 3'UTR 0.37 TCGA-58-A46N-01 7 30876299 30876299 G A FAM188B Silent p.R386R 0.38 TCGA-58-A46N-01 7 31682913 31682913 C - CCDC129 Frame_Shift_Del p.K671Sfs*33 0.24 TCGA-58-A46N-01 7 38295940 38295940 G T TRGJP2 Missense_Mutation p.P20H 0.59 unknown(0) TCGA-58-A46N-01 7 38369979 38369979 C A TRGV8 Missense_Mutation p.D107Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-58-A46N-01 7 38534061 38534061 C A AMPH Missense_Mutation p.G91V 0.45 deleterious(0) probably_damaging(0.982) TCGA-58-A46N-01 7 45015225 45015225 G A MYO1G Missense_Mutation p.S141F 0.54 deleterious(0) probably_damaging(0.999) TCGA-58-A46N-01 7 45632508 45632508 G T ADCY1 Splice_Site p.X263_splice 0.47 TCGA-58-A46N-01 7 47897384 47897384 C T PKD1L1 Missense_Mutation p.R1470Q 0.33 tolerated(0.92) benign(0.004) TCGA-58-A46N-01 7 65706177 65706177 G T TPST1 Missense_Mutation p.K255N 0.43 tolerated(0.41) benign(0.023) TCGA-58-A46N-01 7 70249972 70249972 C T AUTS2 Missense_Mutation p.H731Y 0.41 deleterious(0.01) possibly_damaging(0.862) TCGA-58-A46N-01 7 71130508 71130508 C A WBSCR17 Missense_Mutation p.A398D 0.39 deleterious(0) probably_damaging(0.99) TCGA-58-A46N-01 7 8008943 8008943 C T GLCCI1 5'UTR 0.38 TCGA-58-A46N-01 7 83636681 83636681 T C SEMA3A Silent p.P376P 0.40 TCGA-58-A46N-01 7 88424216 88424216 G T C7orf62 Missense_Mutation p.P14H 0.38 tolerated_low_confidence(0.24) benign(0.017) TCGA-58-A46N-01 7 99869476 99869476 A G GATS Missense_Mutation p.L44P 0.33 deleterious(0.02) possibly_damaging(0.462) TCGA-58-A46N-01 8 113421206 113421206 C T CSMD3 Silent p.V1817V 0.41 TCGA-58-A46N-01 8 131146541 131146541 C T ASAP1 Splice_Site p.X406_splice 0.25 TCGA-58-A46N-01 8 22006249 22006249 G A LGI3 Silent p.Y357Y 0.71 TCGA-58-A46N-01 8 33449599 33449599 G C DUSP26 Missense_Mutation p.P190A 0.80 deleterious(0) probably_damaging(0.995) TCGA-58-A46N-01 8 77767242 77767242 C A ZFHX4 Silent p.R2695R 0.79 TCGA-58-A46N-01 9 114290118 114290118 G A ZNF483 Intron 0.91 TCGA-58-A46N-01 9 121930402 121930402 G T BRINP1 Missense_Mutation p.H416N 0.43 tolerated(0.06) possibly_damaging(0.775) TCGA-58-A46N-01 9 123370061 123370061 C A MEGF9 Nonsense_Mutation p.E439* 0.86 TCGA-58-A46N-01 9 128088707 128088707 A G GAPVD1 Missense_Mutation p.D624G 0.90 tolerated(0.05) probably_damaging(0.998) TCGA-58-A46N-01 9 138713677 138713677 C T CAMSAP1 Missense_Mutation p.G944R 0.34 tolerated(0.11) benign(0.154) TCGA-58-A46N-01 9 140173532 140173532 G T TOR4A Missense_Mutation p.G131C 0.79 tolerated(0.11) benign(0.006) TCGA-58-A46N-01 9 21971153 21971153 C A CDKN2A Nonsense_Mutation p.E69* 0.93 TCGA-58-A46N-01 9 27292261 27292261 T C EQTN Intron 0.79 TCGA-58-A46N-01 9 37588917 37588917 A G TOMM5 3'UTR 0.81 TCGA-58-A46N-01 9 91606823 91606823 G C C9orf47 Missense_Mutation p.G177R 0.38 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-58-A46N-01 X 101971108 101971108 A G GPRASP2 Silent p.E437E 0.90 TCGA-58-A46N-01 X 105153233 105153233 C T NRK Nonsense_Mutation p.Q535* 0.89 TCGA-58-A46N-01 X 111698326 111698326 C T ZCCHC16 Nonsense_Mutation p.Q124* 0.84 TCGA-58-A46N-01 X 135956288 135956288 G A RBMX 3'UTR 0.28 TCGA-58-A46N-01 X 153664162 153664162 G T ATP6AP1 Missense_Mutation p.M446I 0.90 deleterious(0.04) possibly_damaging(0.517) TCGA-58-A46N-01 X 31747837 31747837 C G DMD Missense_Mutation p.R2524P 0.09 possibly_damaging(0.655) TCGA-58-A46N-01 X 41203282 41203282 G T DDX3X Splice_Site p.X256_splice 1.00 TCGA-58-A46N-01 X 56291625 56291625 G T KLF8 Missense_Mutation p.V32F 0.86 deleterious_low_confidence(0) possibly_damaging(0.626) TCGA-58-A46N-01 X 82764299 82764299 C G POU3F4 Missense_Mutation p.R323G 0.86 deleterious(0) probably_damaging(1) TCGA-58-A46N-01 X 89177077 89177077 C T TGIF2LX 5'UTR 0.85 TCGA-60-2695-01 10 108439022 108439022 A T SORCS1 Missense_Mutation p.W578R 0.41 deleterious(0) probably_damaging(0.996) TCGA-60-2695-01 10 25887522 25887522 C G GPR158 Missense_Mutation p.D989E 0.37 tolerated(0.65) benign(0.001) TCGA-60-2695-01 10 29840043 29840043 T G SVIL Silent p.R104R 0.27 TCGA-60-2695-01 10 43078498 43078498 G A ZNF33B RNA 0.59 TCGA-60-2695-01 10 43623681 43623681 C A RET Silent p.P1103P 0.41 TCGA-60-2695-01 10 72020476 72020476 G C NPFFR1 Silent p.A114A 0.47 TCGA-60-2695-01 10 96540387 96540387 A T CYP2C19 Missense_Mutation p.I205F 0.35 tolerated(1) benign(0.002) TCGA-60-2695-01 11 103907682 103907682 G C DDI1 Missense_Mutation p.E44D 0.24 tolerated(0.16) benign(0.029) TCGA-60-2695-01 11 122929099 122929099 T A HSPA8 Missense_Mutation p.K539M 0.38 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-60-2695-01 11 123886512 123886512 C A OR10G4 Silent p.P77P 0.21 TCGA-60-2695-01 11 124180591 124180591 C G OR8D1 Missense_Mutation p.Q24H 0.37 deleterious(0.01) possibly_damaging(0.867) TCGA-60-2695-01 11 34991820 34991820 A G PDHX Silent p.Q317Q 0.33 TCGA-60-2695-01 11 49597862 49597862 C A RP11-707M1.1 RNA 0.38 TCGA-60-2695-01 11 5067884 5067884 C T OR52J3 Silent p.G43G 0.40 TCGA-60-2695-01 11 57145232 57145232 A G PRG3 Silent p.N195N 0.46 TCGA-60-2695-01 11 64522244 64522244 T C PYGM Missense_Mutation p.D307G 0.25 deleterious(0) probably_damaging(0.964) TCGA-60-2695-01 11 71510740 71510740 A G FAM86C1 3'UTR 0.31 TCGA-60-2695-01 11 86125868 86125868 A T CCDC81 Missense_Mutation p.M477L 0.48 tolerated(0.14) benign(0.037) TCGA-60-2695-01 11 89867939 89867939 A G NAALAD2 Missense_Mutation p.R5G 0.27 deleterious_low_confidence(0.05) benign(0.001) TCGA-60-2695-01 12 104383331 104383331 G T GLT8D2 Nonsense_Mutation p.S302* 0.26 TCGA-60-2695-01 12 114836447 114836447 A T TBX5 Missense_Mutation p.H147Q 0.58 tolerated(0.39) benign(0.225) TCGA-60-2695-01 12 128899613 128899613 A G TMEM132C Missense_Mutation p.Y141C 0.42 deleterious(0.01) possibly_damaging(0.831) TCGA-60-2695-01 12 129431905 129431905 G T GLT1D1 Nonsense_Mutation p.G148* 0.28 TCGA-60-2695-01 12 21032499 21032499 A - SLCO1B3 Frame_Shift_Del p.Q422Hfs*7 0.27 TCGA-60-2695-01 12 39703535 39703535 C T KIF21A Missense_Mutation p.G1377E 0.29 deleterious(0) probably_damaging(1) TCGA-60-2695-01 12 56386007 56386007 A C RAB5B 3'UTR 0.56 TCGA-60-2695-01 12 56536096 56536096 G A ESYT1 Missense_Mutation p.G884S 0.26 deleterious(0.01) probably_damaging(0.981) TCGA-60-2695-01 12 58125591 58125591 C T AGAP2 Splice_Site p.X651_splice 0.26 TCGA-60-2695-01 12 66152278 66152278 G A RPSAP52 RNA 0.62 TCGA-60-2695-01 12 72058148 72058148 C A THAP2 5'UTR 0.29 TCGA-60-2695-01 12 75884246 75884246 G C GLIPR1 Missense_Mutation p.G161R 0.49 deleterious(0.03) benign(0.145) TCGA-60-2695-01 12 80651691 80651691 G T OTOGL Nonsense_Mutation p.E591* 0.27 TCGA-60-2695-01 12 80714406 80714406 C A OTOGL Missense_Mutation p.T1327K 0.48 deleterious(0.01) benign(0.029) TCGA-60-2695-01 13 103459565 103459565 A G BIVM 5'UTR 0.90 TCGA-60-2695-01 13 29599621 29599621 G - MTUS2 Frame_Shift_Del p.A274Hfs*21 0.49 TCGA-60-2695-01 13 53217312 53217312 G A HNRNPA1L2 Missense_Mutation p.G229S 0.18 tolerated(0.13) unknown(0) TCGA-60-2695-01 13 75876474 75876474 T G TBC1D4 Missense_Mutation p.H939P 0.86 deleterious(0) probably_damaging(0.982) TCGA-60-2695-01 14 101200700 101200700 C A DLK1 Missense_Mutation p.R207S 0.48 tolerated(0.71) probably_damaging(0.978) TCGA-60-2695-01 14 20019996 20019996 G T POTEM Missense_Mutation p.S75R 0.11 tolerated_low_confidence(0.14) benign(0.003) TCGA-60-2695-01 14 20215786 20215786 T A OR4Q3 Missense_Mutation p.L67H 0.31 deleterious(0) probably_damaging(0.999) TCGA-60-2695-01 14 23282391 23282391 G T SLC7A7 Missense_Mutation p.L73M 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-60-2695-01 14 35649910 35649910 G A KIAA0391 Missense_Mutation p.R401H 0.05 tolerated(0.25) benign(0.002) TCGA-60-2695-01 14 47120933 47120933 G A RPL10L Missense_Mutation p.R3C 0.42 deleterious(0.01) benign(0.118) TCGA-60-2695-01 14 74995712 74995712 C A LTBP2 Missense_Mutation p.V701L 0.31 deleterious(0) possibly_damaging(0.687) TCGA-60-2695-01 14 90866422 90866422 C T CALM1 Missense_Mutation p.T6I 0.35 deleterious_low_confidence(0) benign(0.268) TCGA-60-2695-01 14 95090092 95090092 C A SERPINA3 Missense_Mutation p.P405T 0.37 tolerated(0.09) benign(0.001) TCGA-60-2695-01 15 20169963 20169963 G T IGHV1OR15-9 Missense_Mutation p.S103R 0.21 tolerated(0.16) benign(0.151) TCGA-60-2695-01 15 22383476 22383476 T C OR4N4 3'UTR 0.13 TCGA-60-2695-01 15 23890379 23890379 G A MAGEL2 Silent p.V234V 0.18 TCGA-60-2695-01 15 25444411 25444411 G T SNORD115-14 3'Flank 0.36 TCGA-60-2695-01 15 25936887 25936887 C A ATP10A Missense_Mutation p.G1047V 0.24 deleterious(0) probably_damaging(0.947) TCGA-60-2695-01 15 35084631 35084631 A G ACTC1 Silent p.R198R 0.56 TCGA-60-2695-01 15 40322565 40322565 T C EIF2AK4 Missense_Mutation p.F1523L 0.45 tolerated(0.53) benign(0.015) TCGA-60-2695-01 15 52500754 52500754 T C MYO5C Silent p.E1461E 0.20 TCGA-60-2695-01 15 52613652 52613652 C G MYO5A Missense_Mutation p.D1594H 0.13 deleterious(0) probably_damaging(0.928) TCGA-60-2695-01 15 57730419 57730419 A T CGNL1 Silent p.P74P 0.44 TCGA-60-2695-01 15 65157472 65157472 G C PLEKHO2 Missense_Mutation p.E286D 0.04 tolerated(0.51) benign(0.11) TCGA-60-2695-01 15 75047254 75047254 T G CYP1A2 Missense_Mutation p.I459S 0.60 deleterious(0) probably_damaging(0.989) TCGA-60-2695-01 15 91461963 91461963 A G MAN2A2 Missense_Mutation p.N1093S 0.23 tolerated(0.9) probably_damaging(0.999) TCGA-60-2695-01 16 1817233 1817233 G A MAPK8IP3 Missense_Mutation p.D1057N 0.38 tolerated(0.09) possibly_damaging(0.474) TCGA-60-2695-01 16 19567052 19567052 A G C16orf62 Missense_Mutation p.M90V 0.33 deleterious(0.01) benign(0.011) TCGA-60-2695-01 16 22486514 22486514 G A SMG1P1 RNA 0.20 TCGA-60-2695-01 16 28606933 28606933 T C SULT1A2 Missense_Mutation p.H71R 0.42 tolerated(0.48) benign(0) TCGA-60-2695-01 16 33647670 33647670 G T RP11-812E19.9 Missense_Mutation p.F9L 0.45 deleterious_low_confidence(0.05) benign(0.154) TCGA-60-2695-01 16 4024689 4024689 C G ADCY9 Missense_Mutation p.D951H 0.05 tolerated(0.21) benign(0.002) TCGA-60-2695-01 16 57095610 57095610 T G NLRC5 Missense_Mutation p.L1384R 0.29 deleterious(0) possibly_damaging(0.841) TCGA-60-2695-01 16 71482763 71482763 C A ZNF23 Nonsense_Mutation p.E389* 0.33 TCGA-60-2695-01 16 90075794 90075794 G C DBNDD1 Missense_Mutation p.P46A 0.35 deleterious_low_confidence(0.01) benign(0.228) TCGA-60-2695-01 17 10395757 10395757 G T MYH1 Missense_Mutation p.H1932Q 0.81 tolerated_low_confidence(0.07) benign(0.001) TCGA-60-2695-01 17 33738388 33738388 T G SLFN12 Missense_Mutation p.K569T 0.03 deleterious_low_confidence(0.02) benign(0.006) TCGA-60-2695-01 17 53851167 53851167 C G PCTP Missense_Mutation p.P141R 0.72 deleterious(0.01) possibly_damaging(0.761) TCGA-60-2695-01 17 7577610 7577610 T C TP53 Splice_Site p.X225_splice 0.85 TCGA-60-2695-01 18 12014356 12014356 G T IMPA2 Silent p.R158R 0.56 TCGA-60-2695-01 18 13095637 13095637 G A CEP192 Nonsense_Mutation p.W2130* 0.43 TCGA-60-2695-01 18 29044182 29044182 G T DSG3 Missense_Mutation p.V370F 0.35 deleterious(0) possibly_damaging(0.879) TCGA-60-2695-01 18 47809022 47809022 G A CXXC1 Missense_Mutation p.H642Y 0.64 deleterious(0) probably_damaging(0.969) TCGA-60-2695-01 18 47809023 47809023 C G CXXC1 Silent p.L641L 0.65 TCGA-60-2695-01 18 61310651 61310651 C A SERPINB4 Missense_Mutation p.S54I 0.29 deleterious(0.01) benign(0.094) TCGA-60-2695-01 18 63477086 63477086 G T CDH7 Silent p.T119T 0.55 TCGA-60-2695-01 18 74154851 74154851 G C ZNF516 Missense_Mutation p.R54G 0.30 deleterious(0) probably_damaging(1) TCGA-60-2695-01 19 10450212 10450212 C T ICAM3 Intron 0.11 TCGA-60-2695-01 19 11833282 11833282 C G ZNF823 Missense_Mutation p.G356A 0.22 deleterious(0.03) possibly_damaging(0.833) TCGA-60-2695-01 19 12866953 12866953 A T BEST2 Splice_Site p.X317_splice 0.28 TCGA-60-2695-01 19 14752305 14752305 G T EMR3 Missense_Mutation p.H392N 0.22 deleterious(0.01) benign(0.207) TCGA-60-2695-01 19 17918570 17918570 C A B3GNT3 5'UTR 0.50 TCGA-60-2695-01 19 19313197 19313197 G A NR2C2AP Silent p.G82G 0.06 TCGA-60-2695-01 19 38987086 38987086 G C RYR1 Missense_Mutation p.R2234P 0.61 benign(0.008) TCGA-60-2695-01 19 3964369 3964369 C G DAPK3 Silent p.P142P 0.28 TCGA-60-2695-01 19 42083577 42083577 A T CEACAM21 Silent p.A30A 0.61 TCGA-60-2695-01 19 42396810 42396810 G T ARHGEF1 Missense_Mutation p.W183C 0.08 tolerated(0.1) probably_damaging(0.936) TCGA-60-2695-01 19 43772254 43772254 T G PSG9 Missense_Mutation p.I38L 0.03 deleterious(0) possibly_damaging(0.766) TCGA-60-2695-01 19 45477722 45477722 C T CLPTM1 Silent p.H112H 0.17 TCGA-60-2695-01 19 51189581 51189581 T A SHANK1 Missense_Mutation p.Q830H 0.39 possibly_damaging(0.7) TCGA-60-2695-01 19 54299122 54299122 C A NLRP12 Missense_Mutation p.R1030L 0.30 deleterious(0.01) unknown(0) TCGA-60-2695-01 19 55247689 55247689 C A KIR3DL3 3'UTR 0.31 TCGA-60-2695-01 19 57286844 57286844 A T ZIM2 Missense_Mutation p.L266M 0.64 tolerated(0.06) possibly_damaging(0.896) TCGA-60-2695-01 19 6380091 6380091 G C GTF2F1 3'UTR 0.62 TCGA-60-2695-01 1 110255304 110255304 C T GSTM5 Missense_Mutation p.T34M 0.04 deleterious(0.04) benign(0.053) TCGA-60-2695-01 1 111862893 111862893 G A CHIA Silent p.G412G 0.55 TCGA-60-2695-01 1 1322644 1322644 C A CCNL2 Silent p.R510R 0.49 TCGA-60-2695-01 1 145804334 145804334 C T GPR89A Silent p.R149R 0.18 TCGA-60-2695-01 1 148579618 148579618 G A NBPF15 Missense_Mutation p.C63Y 0.14 tolerated(0.4) possibly_damaging(0.563) TCGA-60-2695-01 1 152082226 152082226 T G TCHH Missense_Mutation p.E1156A 0.51 unknown(0) TCGA-60-2695-01 1 156628480 156628480 C T BCAN Silent p.N861N 0.48 TCGA-60-2695-01 1 156913886 156913886 C A ARHGEF11 Missense_Mutation p.V1026L 0.25 deleterious(0.03) possibly_damaging(0.524) TCGA-60-2695-01 1 161199675 161199675 C T NR1I3 Missense_Mutation p.R329Q 0.05 tolerated(0.08) probably_damaging(1) TCGA-60-2695-01 1 169100778 169100778 T G ATP1B1 Missense_Mutation p.I299M 0.13 tolerated(0.05) benign(0.075) TCGA-60-2695-01 1 169580793 169580793 C G SELP Missense_Mutation p.G362R 0.17 deleterious(0) probably_damaging(0.995) TCGA-60-2695-01 1 176918402 176918402 C A ASTN1 Missense_Mutation p.G658V 0.43 deleterious(0) probably_damaging(1) TCGA-60-2695-01 1 201046145 201046145 C - CACNA1S Frame_Shift_Del p.G577Afs*35 0.25 TCGA-60-2695-01 1 211256194 211256194 C A KCNH1 Missense_Mutation p.R162S 0.50 deleterious(0.05) benign(0.206) TCGA-60-2695-01 1 211748852 211748852 A C SLC30A1 Missense_Mutation p.S468A 0.29 deleterious(0.01) benign(0.026) TCGA-60-2695-01 1 222717523 222717523 C T HHIPL2 Silent p.S110S 0.55 TCGA-60-2695-01 1 222750949 222750949 C T TAF1A Missense_Mutation p.G148R 0.24 deleterious(0.02) possibly_damaging(0.847) TCGA-60-2695-01 1 233113957 233113957 G T NTPCR Missense_Mutation p.V185L 0.18 tolerated(0.57) benign(0.003) TCGA-60-2695-01 1 237841408 237841408 C A RYR2 Missense_Mutation p.A2964E 0.64 benign(0.411) TCGA-60-2695-01 1 248570348 248570348 G T OR2T1 Silent p.L351L 0.23 TCGA-60-2695-01 1 28212507 28212507 A G THEMIS2 3'UTR 0.40 TCGA-60-2695-01 1 28816375 28816375 A G PHACTR4 Intron 0.53 TCGA-60-2695-01 1 52275032 52275032 C A NRD1 Nonsense_Mutation p.E717* 0.28 TCGA-60-2695-01 1 54060372 54060372 C T GLIS1 Silent p.L68L 0.56 TCGA-60-2695-01 1 62330279 62330279 C - INADL Frame_Shift_Del p.P937Rfs*9 0.30 TCGA-60-2695-01 20 44452943 44452943 C G TNNC2 Missense_Mutation p.R101P 0.06 deleterious(0.01) probably_damaging(1) TCGA-60-2695-01 21 10921992 10921992 C G TPTE Missense_Mutation p.R344T 0.21 deleterious(0) probably_damaging(0.99) TCGA-60-2695-01 21 15323395 15323395 C A ANKRD20A11P RNA 0.40 TCGA-60-2695-01 21 31744197 31744197 T C KRTAP13-2 Missense_Mutation p.Y112C 0.32 tolerated(0.26) benign(0.168) TCGA-60-2695-01 22 16287517 16287517 G C POTEH Missense_Mutation p.H123Q 0.77 tolerated_low_confidence(0.8) benign(0.016) TCGA-60-2695-01 22 20128756 20128756 A G ZDHHC8 Missense_Mutation p.D304G 0.61 tolerated(0.06) probably_damaging(0.998) TCGA-60-2695-01 22 30951645 30951645 G A GAL3ST1 Silent p.A189A 0.17 TCGA-60-2695-01 22 32647832 32647832 G T SLC5A4 Silent p.I79I 0.10 TCGA-60-2695-01 2 106690422 106690422 C T C2orf40 Missense_Mutation p.R70W 0.04 deleterious(0) probably_damaging(0.999) TCGA-60-2695-01 2 121999980 121999980 C A TFCP2L1 Missense_Mutation p.E241D 0.40 tolerated(0.13) probably_damaging(0.992) TCGA-60-2695-01 2 128896296 128896296 G T UGGT1 Missense_Mutation p.G530V 0.35 deleterious(0) probably_damaging(0.928) TCGA-60-2695-01 2 15493686 15493686 C G NBAS Silent p.L1360L 0.32 TCGA-60-2695-01 2 160229580 160229581 - A BAZ2B Frame_Shift_Ins p.V1397Cfs*8 0.31 TCGA-60-2695-01 2 163374504 163374504 G T KCNH7 Missense_Mutation p.P210T 0.28 tolerated(0.15) possibly_damaging(0.459) TCGA-60-2695-01 2 163693132 163693132 G A KCNH7 Silent p.T74T 0.36 TCGA-60-2695-01 2 168100468 168100468 G C XIRP2 Missense_Mutation p.V856L 0.35 benign(0.019) TCGA-60-2695-01 2 185802228 185802228 G T ZNF804A Missense_Mutation p.G702V 0.31 tolerated(0.23) benign(0.329) TCGA-60-2695-01 2 196786828 196786828 T C DNAH7 Missense_Mutation p.T1307A 0.36 deleterious(0) possibly_damaging(0.898) TCGA-60-2695-01 2 197594045 197594045 A T CCDC150 Missense_Mutation p.Q895H 0.33 deleterious(0) probably_damaging(0.997) TCGA-60-2695-01 2 201768298 201768298 G A NIF3L1 Missense_Mutation p.R344Q 0.08 deleterious(0) probably_damaging(1) TCGA-60-2695-01 2 203139896 203139896 G A NOP58 Missense_Mutation p.E36K 0.33 deleterious(0.01) possibly_damaging(0.869) TCGA-60-2695-01 2 215275133 215275133 A T SPAG16 3'UTR 0.32 TCGA-60-2695-01 2 217234657 217234657 G - MARCH4 Frame_Shift_Del p.L110Cfs*49 0.40 TCGA-60-2695-01 2 219602425 219602425 A G TTLL4 Missense_Mutation p.Y9C 0.42 tolerated(0.15) benign(0.007) TCGA-60-2695-01 2 233246014 233246014 G A ALPP Missense_Mutation p.G416R 0.36 deleterious(0) probably_damaging(0.999) TCGA-60-2695-01 2 235950085 235950085 C T SH3BP4 Silent p.N224N 0.36 TCGA-60-2695-01 2 242793355 242793355 C T PDCD1 Missense_Mutation p.C241Y 0.39 tolerated(0.28) benign(0.024) TCGA-60-2695-01 2 242814031 242814031 G A CXXC11 Silent p.P108P 0.38 TCGA-60-2695-01 2 27803163 27803163 T A C2orf16 Missense_Mutation p.L1242I 0.12 tolerated(0.05) benign(0.028) TCGA-60-2695-01 2 51255212 51255212 A C NRXN1 Missense_Mutation p.V67G 0.44 deleterious(0) possibly_damaging(0.848) TCGA-60-2695-01 2 61633170 61633170 T C USP34 Silent p.Q75Q 0.37 TCGA-60-2695-01 2 74477487 74477487 C T SLC4A5 Missense_Mutation p.A546T 0.31 deleterious(0) probably_damaging(1) TCGA-60-2695-01 2 84517914 84517914 G A FUNDC2P2 RNA 0.47 TCGA-60-2695-01 3 107517503 107517503 A C BBX Missense_Mutation p.K829N 0.28 deleterious(0) probably_damaging(0.996) TCGA-60-2695-01 3 112252977 112252977 G A ATG3 Intron 0.60 TCGA-60-2695-01 3 118865214 118865214 C A C3orf30 Missense_Mutation p.P60T 0.60 tolerated(0.49) probably_damaging(0.991) TCGA-60-2695-01 3 120315361 120315361 A G NDUFB4 Missense_Mutation p.N52S 0.51 deleterious(0.03) benign(0.038) TCGA-60-2695-01 3 121215735 121215735 G A POLQ Missense_Mutation p.P733L 0.12 deleterious(0.03) probably_damaging(0.979) TCGA-60-2695-01 3 123375983 123375983 C G MYLK Missense_Mutation p.E1426D 0.05 tolerated(0.13) benign(0.044) TCGA-60-2695-01 3 124627063 124627063 C T MUC13 Silent p.T489T 0.19 TCGA-60-2695-01 3 138738571 138738571 A T PRR23B 3'UTR 0.35 TCGA-60-2695-01 3 145789159 145789159 T A PLOD2 Missense_Mutation p.M634L 0.27 deleterious(0.03) possibly_damaging(0.793) TCGA-60-2695-01 3 151094912 151094912 T C MED12L Missense_Mutation p.I1386T 0.39 tolerated(0.34) benign(0.006) TCGA-60-2695-01 3 151164618 151164618 T G IGSF10 Missense_Mutation p.T1051P 0.38 deleterious(0) possibly_damaging(0.713) TCGA-60-2695-01 3 178952085 178952085 A T PIK3CA Missense_Mutation p.H1047L 0.26 tolerated(0.44) benign(0.085) TCGA-60-2695-01 3 179123100 179123100 G C GNB4 Missense_Mutation p.S265C 0.24 deleterious(0.02) benign(0.063) TCGA-60-2695-01 3 182987685 182987685 A G B3GNT5 Silent p.E33E 0.36 TCGA-60-2695-01 3 30713449 30713449 C G TGFBR2 Silent p.V283V 0.14 TCGA-60-2695-01 3 30713554 30713554 C T TGFBR2 Silent p.I318I 0.22 TCGA-60-2695-01 3 37156561 37156561 G C LRRFIP2 Nonsense_Mutation p.S119* 0.06 TCGA-60-2695-01 3 48698017 48698017 G A CELSR3 Missense_Mutation p.A684V 0.70 deleterious(0.01) possibly_damaging(0.582) TCGA-60-2695-01 3 50395802 50395802 G A TMEM115 Silent p.I231I 0.12 TCGA-60-2695-01 3 50395814 50395814 G A TMEM115 Silent p.F227F 0.16 TCGA-60-2695-01 4 113508521 113508521 T A C4orf21 Missense_Mutation p.N1231I 0.41 deleterious(0.01) possibly_damaging(0.854) TCGA-60-2695-01 4 22422589 22422589 G C GPR125 Missense_Mutation p.R577G 0.39 tolerated(0.26) benign(0.096) TCGA-60-2695-01 4 25849099 25849099 T C SEL1L3 Missense_Mutation p.R184G 0.39 tolerated(0.88) benign(0) TCGA-60-2695-01 4 6374283 6374283 G T PPP2R2C Missense_Mutation p.L198I 0.47 deleterious(0.01) possibly_damaging(0.612) TCGA-60-2695-01 4 73175131 73175131 C A ADAMTS3 Missense_Mutation p.R721I 0.40 deleterious(0) probably_damaging(0.979) TCGA-60-2695-01 4 83745752 83745752 A T SEC31A Missense_Mutation p.F1123I 0.31 deleterious(0) probably_damaging(0.998) TCGA-60-2695-01 4 845635 845635 C A GAK Silent p.P1137P 0.49 TCGA-60-2695-01 4 89013439 89013439 T C ABCG2 Missense_Mutation p.I639V 0.26 tolerated(0.13) benign(0.02) TCGA-60-2695-01 5 10290852 10290852 C A CMBL Missense_Mutation p.C8F 0.25 tolerated(0.17) benign(0.078) TCGA-60-2695-01 5 140530024 140530024 C T PCDHB6 Silent p.G62G 0.25 TCGA-60-2695-01 5 140720485 140720485 C T PCDHGA2 Silent p.H649H 0.14 TCGA-60-2695-01 5 140736820 140736820 G T PCDHGA4 Missense_Mutation p.D685Y 0.81 deleterious_low_confidence(0.02) benign(0.021) TCGA-60-2695-01 5 140774316 140774316 G A PCDHGA8 Missense_Mutation p.V646I 0.60 deleterious_low_confidence(0.01) probably_damaging(0.948) TCGA-60-2695-01 5 148408005 148408005 C G SH3TC2 Missense_Mutation p.E430D 0.08 tolerated(0.16) benign(0.102) TCGA-60-2695-01 5 14871603 14871603 G C ANKH 5'UTR 0.13 TCGA-60-2695-01 5 167622278 167622278 A G TENM2 Missense_Mutation p.T960A 0.64 deleterious(0.01) possibly_damaging(0.799) TCGA-60-2695-01 5 176931264 176931264 A T DOK3 Missense_Mutation p.L404Q 0.87 tolerated(0.06) possibly_damaging(0.729) TCGA-60-2695-01 5 33937901 33937901 C T RXFP3 Silent p.I352I 0.65 TCGA-60-2695-01 5 3601193 3601193 A T IRX1 3'UTR 0.11 TCGA-60-2695-01 5 38407222 38407222 G A EGFLAM Missense_Mutation p.G374D 0.18 deleterious(0) probably_damaging(1) TCGA-60-2695-01 5 54403626 54403626 A G GZMA Missense_Mutation p.K74E 0.80 tolerated(0.41) benign(0.005) TCGA-60-2695-01 5 94865913 94865913 G A TTC37 Nonsense_Mutation p.Q258* 0.78 TCGA-60-2695-01 6 117232170 117232170 C A RFX6 Missense_Mutation p.H249N 0.70 tolerated(0.14) benign(0.017) TCGA-60-2695-01 6 129591793 129591793 C A LAMA2 Missense_Mutation p.P783T 0.74 tolerated(0.17) benign(0.297) TCGA-60-2695-01 6 136599240 136599240 T A BCLAF1 Missense_Mutation p.Q260L 0.11 tolerated(0.21) benign(0.133) TCGA-60-2695-01 6 37138980 37138980 T C PIM1 Missense_Mutation p.L107P 0.04 deleterious(0) probably_damaging(0.999) TCGA-60-2695-01 6 46626653 46626653 G C SLC25A27 Intron 0.43 TCGA-60-2695-01 6 72975097 72975097 A G RIMS1 Missense_Mutation p.I1067V 0.64 tolerated(1) benign(0) TCGA-60-2695-01 6 87725803 87725803 G T HTR1E Missense_Mutation p.D251Y 0.07 deleterious(0) possibly_damaging(0.737) TCGA-60-2695-01 6 97414939 97414939 G C KLHL32 Translation_Start_Site p.M1? 0.23 deleterious_low_confidence(0) benign(0.022) TCGA-60-2695-01 6 99958050 99958050 C G USP45 Missense_Mutation p.R16T 0.06 deleterious(0) probably_damaging(0.938) TCGA-60-2695-01 7 103805706 103805706 T A ORC5 Missense_Mutation p.N339Y 0.29 deleterious(0.04) benign(0.429) TCGA-60-2695-01 7 106509145 106509145 C G PIK3CG Missense_Mutation p.T380R 0.35 tolerated(0.33) benign(0.299) TCGA-60-2695-01 7 111474652 111474652 C A DOCK4 Nonsense_Mutation p.E943* 0.55 TCGA-60-2695-01 7 120971782 120971782 C A WNT16 Missense_Mutation p.H133N 0.37 deleterious(0) probably_damaging(0.976) TCGA-60-2695-01 7 142028386 142028386 G T TRBV6-1 Silent p.L40L 0.37 TCGA-60-2695-01 7 142991414 142991414 G A CASP2 Silent p.Q189Q 0.38 TCGA-60-2695-01 7 148963795 148963795 C A ZNF783 Missense_Mutation p.P132T 0.38 deleterious(0) probably_damaging(0.987) TCGA-60-2695-01 7 148963796 148963796 C A ZNF783 Missense_Mutation p.P132Q 0.38 deleterious(0) probably_damaging(0.994) TCGA-60-2695-01 7 24663302 24663302 G A MPP6 Missense_Mutation p.E6K 0.34 deleterious(0.03) benign(0.026) TCGA-60-2695-01 7 2625910 2625910 C T IQCE Missense_Mutation p.S298F 0.42 deleterious(0) probably_damaging(0.957) TCGA-60-2695-01 7 5254189 5254189 G C WIPI2 Missense_Mutation p.V79L 0.09 deleterious(0) benign(0.285) TCGA-60-2695-01 7 63538179 63538179 C G ZNF727 Missense_Mutation p.T251S 0.25 tolerated(0.14) possibly_damaging(0.833) TCGA-60-2695-01 7 71743748 71743748 C A CALN1 Missense_Mutation p.G56V 0.42 deleterious(0.01) probably_damaging(0.92) TCGA-60-2695-01 7 71743749 71743749 C A CALN1 Missense_Mutation p.G56W 0.42 deleterious(0) probably_damaging(0.992) TCGA-60-2695-01 7 91622331 91622331 G T AKAP9 Nonsense_Mutation p.E180* 0.07 TCGA-60-2695-01 7 93106966 93106966 G T CALCR Missense_Mutation p.R92S 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-60-2695-01 7 98957329 98957329 G A ARPC1A Silent p.T317T 0.40 TCGA-60-2695-01 8 102212259 102212259 G A ZNF706 Missense_Mutation p.P68S 0.88 deleterious(0) unknown(0) TCGA-60-2695-01 8 11180259 11180259 G T MTMR9 Nonsense_Mutation p.E538* 0.85 TCGA-60-2695-01 8 13259056 13259056 C G DLC1 Missense_Mutation p.D366H 0.87 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-60-2695-01 8 144898728 144898728 C G PUF60 Missense_Mutation p.D548H 0.03 deleterious(0) benign(0.077) TCGA-60-2695-01 8 2808672 2808672 A C CSMD1 Missense_Mutation p.F3389V 0.83 benign(0.045) TCGA-60-2695-01 8 35606138 35606138 C A UNC5D Silent p.I620I 0.85 TCGA-60-2695-01 8 8750307 8750307 T G MFHAS1 Missense_Mutation p.S88R 0.95 tolerated(0.33) benign(0.139) TCGA-60-2695-01 9 105767609 105767609 A G CYLC2 Missense_Mutation p.I232M 0.56 deleterious(0.01) unknown(0) TCGA-60-2695-01 9 113149672 113149672 C A SVEP1 Missense_Mutation p.G3318V 0.31 probably_damaging(0.971) TCGA-60-2695-01 9 125486332 125486332 C A OR1L4 Missense_Mutation p.P22T 0.22 deleterious(0.01) possibly_damaging(0.645) TCGA-60-2695-01 9 136343463 136343463 C A SLC2A6 Silent p.L56L 0.50 TCGA-60-2695-01 9 139700922 139700922 C T CCDC183 Intron 0.25 TCGA-60-2695-01 9 140355173 140355173 C G PNPLA7 Missense_Mutation p.Q1286H 0.13 tolerated(0.56) benign(0.059) TCGA-60-2695-01 9 140953593 140953593 C A CACNA1B Silent p.S1512S 0.29 TCGA-60-2695-01 9 32635622 32635622 C A TAF1L 5'UTR 0.52 TCGA-60-2695-01 9 84608720 84608720 G T SPATA31D1 Missense_Mutation p.S1112I 0.32 tolerated(0.06) possibly_damaging(0.772) TCGA-60-2695-01 9 8528612 8528612 G A PTPRD Missense_Mutation p.R174C 0.22 deleterious(0) probably_damaging(1) TCGA-60-2695-01 X 101396053 101396053 G T TCEAL6 Missense_Mutation p.P84Q 0.42 tolerated(0.06) possibly_damaging(0.664) TCGA-60-2695-01 X 101821980 101821980 C A NXF4 RNA 0.46 TCGA-60-2695-01 X 106096807 106096807 G T TBC1D8B Missense_Mutation p.G727V 0.05 tolerated(0.14) benign(0.066) TCGA-60-2695-01 X 106243254 106243254 C G MORC4 5'UTR 0.35 TCGA-60-2695-01 X 109695615 109695615 G T RGAG1 Silent p.T590T 0.34 TCGA-60-2695-01 X 112024186 112024186 G A AMOT Missense_Mutation p.H801Y 0.35 unknown(0) TCGA-60-2695-01 X 117035907 117035907 T A KLHL13 Missense_Mutation p.T460S 0.10 tolerated(1) benign(0.104) TCGA-60-2695-01 X 117959761 117959761 G T ZCCHC12 Missense_Mutation p.S185I 0.35 tolerated(0.1) benign(0.299) TCGA-60-2695-01 X 118925543 118925543 G C RPL39 5'UTR 0.23 TCGA-60-2695-01 X 119249690 119249690 C A RHOXF1 Missense_Mutation p.G28V 0.44 tolerated(0.23) probably_damaging(0.953) TCGA-60-2695-01 X 122744812 122744812 T C THOC2 Missense_Mutation p.H1586R 0.38 tolerated_low_confidence(0.41) benign(0.016) TCGA-60-2695-01 X 122866844 122866844 G T THOC2 Missense_Mutation p.A10E 0.35 tolerated(0.63) benign(0.003) TCGA-60-2695-01 X 125685528 125685528 G T DCAF12L1 Nonsense_Mutation p.S355* 0.50 TCGA-60-2695-01 X 129843306 129843306 C T ENOX2 Splice_Site 0.24 TCGA-60-2695-01 X 134994961 134994961 A T SAGE1 Nonsense_Mutation p.K874* 0.09 TCGA-60-2695-01 X 135750274 135750274 G T ARHGEF6 Missense_Mutation p.L749I 0.12 deleterious(0) possibly_damaging(0.757) TCGA-60-2695-01 X 142795102 142795102 A G SPANXN2 3'UTR 0.40 TCGA-60-2695-01 X 147024787 147024787 G A FMR1 Missense_Mutation p.R471Q 0.32 tolerated(0.07) benign(0.398) TCGA-60-2695-01 X 148627121 148627121 G T CXorf40A Intron 0.48 TCGA-60-2695-01 X 148770527 148770527 G T MAGEA11 5'UTR 0.37 TCGA-60-2695-01 X 15526553 15526553 A T BMX Missense_Mutation p.Y26F 0.32 tolerated(0.28) probably_damaging(0.999) TCGA-60-2695-01 X 17768067 17768067 C A SCML1 Silent p.L119L 0.30 TCGA-60-2695-01 X 21995227 21995227 C G SMS Silent p.T126T 0.29 TCGA-60-2695-01 X 30269494 30269494 C T MAGEB1 Missense_Mutation p.A295V 0.05 deleterious(0.01) benign(0.003) TCGA-60-2695-01 X 31089516 31089516 G T FTHL17 3'UTR 0.36 TCGA-60-2695-01 X 37641412 37641412 C G CYBB Missense_Mutation p.F39L 0.36 deleterious(0.03) benign(0.015) TCGA-60-2695-01 X 38147222 38147222 C A RPGR Nonsense_Mutation p.E549* 0.36 TCGA-60-2695-01 X 47030555 47030555 G T RBM10 Missense_Mutation p.E110D 0.27 tolerated(0.24) benign(0.036) TCGA-60-2695-01 X 53449607 53449607 G T SMC1A 5'UTR 0.35 TCGA-60-2695-01 X 53674315 53674315 A G HUWE1 Missense_Mutation p.I116T 0.42 possibly_damaging(0.867) TCGA-60-2695-01 X 65253388 65253388 C T VSIG4 Missense_Mutation p.E114K 0.03 tolerated(0.34) probably_damaging(0.944) TCGA-60-2695-01 X 69669592 69669592 C A DLG3 Missense_Mutation p.H196N 0.35 deleterious(0) benign(0.003) TCGA-60-2695-01 X 70352026 70352026 C A MED12 Missense_Mutation p.P1408H 0.28 possibly_damaging(0.497) TCGA-60-2695-01 X 70444224 70444224 C T GJB1 Missense_Mutation p.R223C 0.37 deleterious(0.02) benign(0.109) TCGA-60-2695-01 X 71417465 71417465 C T PIN4 3'UTR 0.36 TCGA-60-2695-01 X 74293568 74293568 C G ABCB7 Missense_Mutation p.G331R 0.26 deleterious(0) probably_damaging(0.945) TCGA-60-2695-01 X 7811282 7811282 A T VCX Missense_Mutation p.K13M 0.19 tolerated_low_confidence(0.08) unknown(0) TCGA-60-2695-01 X 92964470 92964470 A G FAM133A Missense_Mutation p.R18G 0.38 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-60-2697-01 10 134898416 134898416 T G GPR123 5'Flank 0.05 TCGA-60-2697-01 14 23857458 23857458 C A MYH6 Missense_Mutation p.R1422L 0.05 deleterious(0.02) probably_damaging(1) TCGA-60-2697-01 19 48807360 48807360 G A CCDC114 Missense_Mutation p.R198C 0.10 deleterious(0) probably_damaging(1) TCGA-60-2697-01 19 55451095 55451095 C G NLRP7 Silent p.A364A 0.06 TCGA-60-2697-01 20 34219941 34219941 G A CPNE1 Silent p.L160L 0.09 TCGA-60-2697-01 5 140167080 140167080 A G PCDHA1 Missense_Mutation p.K402R 0.03 tolerated_low_confidence(0.12) benign(0.158) TCGA-60-2697-01 5 140616329 140616329 C A PCDHB18 RNA 0.05 TCGA-60-2697-01 6 55304319 55304319 T A HMGCLL1 Missense_Mutation p.L308F 0.05 deleterious(0.02) possibly_damaging(0.496) TCGA-60-2697-01 7 131911018 131911018 C A PLXNA4 Silent p.G628G 0.05 TCGA-60-2697-01 7 134363709 134363709 G T BPGM Missense_Mutation p.G236C 0.05 deleterious(0.01) probably_damaging(0.997) TCGA-60-2697-01 7 33573775 33573775 C G BBS9 Silent p.T836T 0.07 TCGA-60-2697-01 9 77377173 77377173 A T TRPM6 Missense_Mutation p.W1472R 0.06 tolerated_low_confidence(0.3) benign(0.001) TCGA-60-2697-01 X 148048593 148048593 C A AFF2 Missense_Mutation p.L1063I 0.11 tolerated(0.29) possibly_damaging(0.549) TCGA-60-2697-01 X 79286428 79286428 C A TBX22 Missense_Mutation p.P461T 0.07 tolerated(0.06) benign(0.03) TCGA-60-2698-01 10 101656145 101656145 T C DNMBP Missense_Mutation p.Y977C 0.38 deleterious(0) probably_damaging(1) TCGA-60-2698-01 10 103281516 103281516 C T BTRC Nonsense_Mutation p.Q149* 0.05 TCGA-60-2698-01 10 103989028 103989028 G T ELOVL3 3'UTR 0.38 TCGA-60-2698-01 10 103989084 103989084 G A ELOVL3 3'UTR 0.29 TCGA-60-2698-01 10 104164663 104164663 G A PSD Silent p.F849F 0.50 TCGA-60-2698-01 10 105086378 105086378 C G PCGF6 Missense_Mutation p.K274N 0.08 tolerated(0.08) possibly_damaging(0.908) TCGA-60-2698-01 10 105796278 105796278 C G COL17A1 Silent p.L1130L 0.40 TCGA-60-2698-01 10 105824224 105824224 G A COL17A1 Silent p.L246L 0.06 TCGA-60-2698-01 10 108589406 108589406 C G SORCS1 Missense_Mutation p.E218Q 0.03 tolerated(0.22) benign(0.343) TCGA-60-2698-01 10 11259437 11259437 G A CELF2 Silent p.Q107Q 0.05 TCGA-60-2698-01 10 117075230 117075230 C A ATRNL1 Silent p.S1007S 0.34 TCGA-60-2698-01 10 118460505 118460505 G T HSPA12A Silent p.A130A 0.06 TCGA-60-2698-01 10 119003708 119003708 C T SLC18A2 Silent p.D116D 0.34 TCGA-60-2698-01 10 124399867 124399867 C T DMBT1 Silent p.L2289L 0.21 TCGA-60-2698-01 10 124399868 124399868 C A DMBT1 Missense_Mutation p.H2290N 0.20 tolerated(0.25) benign(0.012) TCGA-60-2698-01 10 127464271 127464271 T C MMP21 Silent p.P40P 0.29 TCGA-60-2698-01 10 127705822 127705822 C T ADAM12 3'UTR 0.37 TCGA-60-2698-01 10 17087132 17087132 C G CUBN Silent p.P1182P 0.44 TCGA-60-2698-01 10 18834947 18834947 G T NSUN6 Missense_Mutation p.A442D 0.11 tolerated(0.24) benign(0.138) TCGA-60-2698-01 10 23248443 23248443 G A ARMC3 Silent p.L159L 0.12 TCGA-60-2698-01 10 24886905 24886905 G A ARHGAP21 Nonsense_Mutation p.R1056* 0.11 TCGA-60-2698-01 10 27537021 27537021 G A RP11-85G18.6 Intron 0.44 TCGA-60-2698-01 10 33015711 33015711 C G C10ORF68 Silent p.L180L 0.08 TCGA-60-2698-01 10 37508127 37508127 C T ANKRD30A Nonsense_Mutation p.Q1107* 0.40 TCGA-60-2698-01 10 44104188 44104188 G T ZNF485 Missense_Mutation p.G51W 0.09 deleterious(0) probably_damaging(0.999) TCGA-60-2698-01 10 45799724 45799724 G A OR13A1 Silent p.F49F 0.10 TCGA-60-2698-01 10 46121658 46121658 G A ZFAND4 Missense_Mutation p.S538F 0.09 deleterious(0) possibly_damaging(0.766) TCGA-60-2698-01 10 46968611 46968611 G A SYT15 Silent p.L109L 0.08 TCGA-60-2698-01 10 49393641 49393641 C T FRMPD2 Missense_Mutation p.E772K 0.07 deleterious(0) possibly_damaging(0.637) TCGA-60-2698-01 10 49400861 49400861 C G FRMPD2 Missense_Mutation p.Q677H 0.19 tolerated(0.06) possibly_damaging(0.757) TCGA-60-2698-01 10 5006011 5006011 C G AKR1C1 Intron 0.51 TCGA-60-2698-01 10 55568917 55568917 G A PCDH15 Silent p.P565P 0.10 TCGA-60-2698-01 10 55663038 55663038 C T PCDH15 Missense_Mutation p.D1156N 0.25 deleterious(0.04) benign(0.361) TCGA-60-2698-01 10 55944935 55944935 G A PCDH15 Nonsense_Mutation p.Q467* 0.14 TCGA-60-2698-01 10 61833437 61833437 T A ANK3 Missense_Mutation p.E2401V 0.24 probably_damaging(0.981) TCGA-60-2698-01 10 64967434 64967434 C G JMJD1C Missense_Mutation p.R1332T 0.26 deleterious_low_confidence(0) benign(0.14) TCGA-60-2698-01 10 69934214 69934214 C A MYPN Missense_Mutation p.P789T 0.29 deleterious(0.02) benign(0.044) TCGA-60-2698-01 10 70332691 70332691 C A TET1 Missense_Mutation p.S199Y 0.18 deleterious(0) possibly_damaging(0.736) TCGA-60-2698-01 10 70502187 70502187 C T CCAR1 Nonsense_Mutation p.Q127* 0.30 TCGA-60-2698-01 10 71332178 71332178 G C NEUROG3 Missense_Mutation p.L208V 0.15 tolerated_low_confidence(0.09) benign(0.054) TCGA-60-2698-01 10 72195636 72195636 G C NODAL Missense_Mutation p.S99R 0.21 tolerated(0.21) benign(0.007) TCGA-60-2698-01 10 8092707 8092707 C T GATA3 5'Flank 0.41 TCGA-60-2698-01 10 81373495 81373495 C G SFTPA1 Missense_Mutation p.L140V 0.17 deleterious(0) possibly_damaging(0.507) TCGA-60-2698-01 10 88425566 88425566 C T OPN4 3'UTR 0.20 TCGA-60-2698-01 10 95447185 95447185 C G FRA10AC1 Missense_Mutation p.E163Q 0.11 deleterious(0.02) possibly_damaging(0.855) TCGA-60-2698-01 10 98825822 98825822 G C SLIT1 Missense_Mutation p.I145M 0.48 deleterious(0) benign(0.343) TCGA-60-2698-01 10 99229407 99229407 C G MMS19 Missense_Mutation p.R307T 0.08 deleterious(0.03) benign(0.254) TCGA-60-2698-01 10 99330049 99330049 G A UBTD1 Silent p.L151L 0.06 TCGA-60-2698-01 11 111597721 111597721 C T PPP2R1B Missense_Mutation p.E658K 0.44 deleterious_low_confidence(0.02) benign(0.006) TCGA-60-2698-01 11 111746170 111746170 G T FDXACB1 Missense_Mutation p.R451S 0.35 tolerated(0.46) benign(0.001) TCGA-60-2698-01 11 111942410 111942410 G C PIH1D2 Missense_Mutation p.H84D 0.04 tolerated(0.62) benign(0.004) TCGA-60-2698-01 11 112832291 112832291 G C NCAM1 Missense_Mutation p.R45T 0.29 deleterious_low_confidence(0.03) benign(0.003) TCGA-60-2698-01 11 113669937 113669937 G A USP28 3'UTR 0.12 TCGA-60-2698-01 11 11400750 11400750 G T GALNT18 Missense_Mutation p.F219L 0.47 tolerated(1) possibly_damaging(0.76) TCGA-60-2698-01 11 118267127 118267127 G A UBE4A Missense_Mutation p.R1065K 0.11 tolerated(0.63) benign(0.041) TCGA-60-2698-01 11 118965713 118965713 G A H2AFX Missense_Mutation p.S131L 0.18 tolerated_low_confidence(0.29) benign(0.011) TCGA-60-2698-01 11 124189674 124189674 G T OR8D2 Silent p.V140V 0.28 TCGA-60-2698-01 11 124412888 124412888 G T OR8B12 Silent p.L221L 0.32 TCGA-60-2698-01 11 124623562 124623562 G C ESAM Missense_Mutation p.Q385E 0.35 deleterious(0) possibly_damaging(0.818) TCGA-60-2698-01 11 125867216 125867216 G C CDON Missense_Mutation p.P750A 0.50 deleterious(0) probably_damaging(0.992) TCGA-60-2698-01 11 129787090 129787090 C T PRDM10 Missense_Mutation p.E757K 0.44 tolerated(0.14) probably_damaging(0.991) TCGA-60-2698-01 11 14491055 14491055 A G COPB1 Missense_Mutation p.S598P 0.42 deleterious(0) probably_damaging(0.964) TCGA-60-2698-01 11 18434253 18434253 C T LDHC Intron 0.38 TCGA-60-2698-01 11 18456319 18456319 A G LDHC Missense_Mutation p.S151G 0.40 deleterious(0) probably_damaging(0.997) TCGA-60-2698-01 11 20636265 20636265 G A SLC6A5 Silent p.K342K 0.39 TCGA-60-2698-01 11 27077152 27077152 G C BBOX1 Missense_Mutation p.D59H 0.08 deleterious(0) probably_damaging(0.999) TCGA-60-2698-01 11 3038392 3038392 T C CARS Missense_Mutation p.R621G 0.11 tolerated(0.37) benign(0.001) TCGA-60-2698-01 11 36654838 36654838 T C C11orf74 Silent p.D47D 0.41 TCGA-60-2698-01 11 40136116 40136116 G T LRRC4C Missense_Mutation p.T576K 0.04 tolerated_low_confidence(0.09) benign(0.115) TCGA-60-2698-01 11 46726895 46726895 G A ZNF408 Missense_Mutation p.E549K 0.06 deleterious(0) probably_damaging(0.998) TCGA-60-2698-01 11 46916147 46916147 C G LRP4 Missense_Mutation p.E511D 0.41 tolerated(0.06) possibly_damaging(0.867) TCGA-60-2698-01 11 48346796 48346796 A T OR4C3 Missense_Mutation p.M102L 0.13 tolerated(0.33) benign(0.004) TCGA-60-2698-01 11 51515761 51515761 C T OR4C46 Silent p.F160F 0.04 TCGA-60-2698-01 11 5410897 5410897 T A OR51M1 Nonsense_Mutation p.L90* 0.39 TCGA-60-2698-01 11 55135666 55135666 A G OR4A15 Missense_Mutation p.T103A 0.21 deleterious_low_confidence(0) benign(0.126) TCGA-60-2698-01 11 5530093 5530093 C A UBQLN3 Missense_Mutation p.E232D 0.36 deleterious(0) probably_damaging(0.993) TCGA-60-2698-01 11 55563673 55563673 G C OR5D14 Silent p.L214L 0.05 TCGA-60-2698-01 11 55681880 55681880 T C OR5W2 Missense_Mutation p.Y60C 0.11 deleterious(0) probably_damaging(0.999) TCGA-60-2698-01 11 55703584 55703584 C A OR5I1 Missense_Mutation p.G98V 0.24 deleterious(0.01) possibly_damaging(0.726) TCGA-60-2698-01 11 55944688 55944688 C A OR5J2 Missense_Mutation p.L199M 0.17 tolerated(0.15) possibly_damaging(0.803) TCGA-60-2698-01 11 56020334 56020334 C G OR5T3 Missense_Mutation p.S220C 0.24 deleterious(0) probably_damaging(0.992) TCGA-60-2698-01 11 56237923 56237923 G A OR5M3 Silent p.S17S 0.06 TCGA-60-2698-01 11 56310301 56310301 T A OR5M11 Missense_Mutation p.T145S 0.28 tolerated(0.39) benign(0.03) TCGA-60-2698-01 11 56310358 56310358 A T OR5M11 Missense_Mutation p.Y126N 0.35 deleterious(0.01) benign(0.001) TCGA-60-2698-01 11 5665110 5665110 C T TRIM34 3'UTR 0.14 TCGA-60-2698-01 11 5686453 5686453 T C TRIM5 Silent p.S356S 0.44 TCGA-60-2698-01 11 58722807 58722807 C A GLYATL1 Missense_Mutation p.P189T 0.32 tolerated(0.09) benign(0.104) TCGA-60-2698-01 11 58920584 58920584 G A FAM111A Silent p.Q481Q 0.11 TCGA-60-2698-01 11 58972187 58972187 C G DTX4 Silent p.L555L 0.10 TCGA-60-2698-01 11 5905763 5905763 C T OR52E4 Missense_Mutation p.P81S 0.38 deleterious(0.01) possibly_damaging(0.902) TCGA-60-2698-01 11 60704150 60704150 C G TMEM132A Nonsense_Mutation p.S949* 0.38 TCGA-60-2698-01 11 60714262 60714262 C A SLC15A3 Missense_Mutation p.R197L 0.28 deleterious(0.01) probably_damaging(1) TCGA-60-2698-01 11 61026260 61026260 G A VWCE Missense_Mutation p.R919C 0.19 deleterious_low_confidence(0.01) benign(0.425) TCGA-60-2698-01 11 62378413 62378413 C T EML3 Silent p.Q168Q 0.09 TCGA-60-2698-01 11 62558093 62558093 C T TMEM223 3'UTR 0.20 TCGA-60-2698-01 11 63320533 63320533 G A HRASLS2 Missense_Mutation p.T131I 0.20 tolerated(0.08) benign(0.14) TCGA-60-2698-01 11 63918818 63918818 A T MACROD1 Missense_Mutation p.V137E 0.09 tolerated(1) benign(0.002) TCGA-60-2698-01 11 63997112 63997112 C T NUDT22 Intron 0.32 TCGA-60-2698-01 11 64606236 64606236 C A CDC42BPG Missense_Mutation p.G339C 0.27 deleterious(0) possibly_damaging(0.668) TCGA-60-2698-01 11 65003911 65003911 G A SLC22A20 RNA 0.45 TCGA-60-2698-01 11 6632128 6632128 G A TAF10 3'UTR 0.15 TCGA-60-2698-01 11 6638000 6638000 C A TPP1 Missense_Mutation p.V260L 0.37 deleterious(0.01) benign(0.279) TCGA-60-2698-01 11 67159653 67159653 C T RAD9A Missense_Mutation p.S19F 0.24 deleterious(0) probably_damaging(0.989) TCGA-60-2698-01 11 67159668 67159668 G T RAD9A Missense_Mutation p.G24V 0.22 deleterious(0) probably_damaging(1) TCGA-60-2698-01 11 67234770 67234770 C T TMEM134 Intron 0.13 TCGA-60-2698-01 11 68700813 68700813 G A IGHMBP2 Missense_Mutation p.E428K 0.60 tolerated(0.39) benign(0.008) TCGA-60-2698-01 11 688371 688371 C G DEAF1 Missense_Mutation p.E159D 0.13 tolerated(0.21) benign(0.194) TCGA-60-2698-01 11 68851471 68851471 G A TPCN2 Missense_Mutation p.G583D 0.05 deleterious(0.01) probably_damaging(0.993) TCGA-60-2698-01 11 70332825 70332825 C A SHANK2 Silent p.A1192A 0.04 TCGA-60-2698-01 11 70332944 70332944 C T SHANK2 Missense_Mutation p.E1153K 0.04 tolerated(0.7) benign(0) TCGA-60-2698-01 11 70333107 70333107 C T SHANK2 Silent p.R1098R 0.06 TCGA-60-2698-01 11 70333551 70333551 C G SHANK2 Silent p.G950G 0.05 TCGA-60-2698-01 11 7092450 7092450 G A NLRP14 Missense_Mutation p.A1065T 0.13 tolerated(0.29) benign(0.051) TCGA-60-2698-01 11 72040820 72040820 C G CLPB Missense_Mutation p.M298I 0.08 tolerated(0.21) benign(0.222) TCGA-60-2698-01 11 72290356 72290356 G C PDE2A Missense_Mutation p.I776M 0.09 deleterious(0.01) probably_damaging(0.991) TCGA-60-2698-01 11 73748584 73748584 C A C2CD3 Silent p.G1940G 0.13 TCGA-60-2698-01 11 74555245 74555245 G C XRRA1 Missense_Mutation p.L663V 0.12 tolerated(0.56) benign(0.005) TCGA-60-2698-01 11 76371468 76371468 G A LRRC32 Missense_Mutation p.T390M 0.15 tolerated(0.09) benign(0.16) TCGA-60-2698-01 11 76885810 76885810 C A MYO7A Missense_Mutation p.D648E 0.23 deleterious(0.03) probably_damaging(0.998) TCGA-60-2698-01 11 77884785 77884785 G A KCTD21 3'UTR 0.10 TCGA-60-2698-01 11 77907956 77907956 C T USP35 Missense_Mutation p.S222F 0.15 deleterious(0) unknown(0) TCGA-60-2698-01 11 78369130 78369130 C G TENM4 Missense_Mutation p.M2761I 0.10 tolerated(0.14) benign(0.004) TCGA-60-2698-01 11 86158109 86158109 C T ME3 Missense_Mutation p.E460K 0.04 tolerated(0.48) benign(0.019) TCGA-60-2698-01 11 87024486 87024486 G T TMEM135 Missense_Mutation p.R319L 0.17 deleterious(0) probably_damaging(0.995) TCGA-60-2698-01 11 88780474 88780474 C T GRM5 Missense_Mutation p.M189I 0.04 deleterious(0.01) probably_damaging(0.989) TCGA-60-2698-01 11 8941160 8941160 T A AKIP1 3'UTR 0.50 TCGA-60-2698-01 11 9101052 9101052 G A SCUBE2 Silent p.I87I 0.04 TCGA-60-2698-01 11 92714695 92714695 C A MTNR1B Missense_Mutation p.F102L 0.25 tolerated(0.18) benign(0.052) TCGA-60-2698-01 11 94862660 94862660 C G ENDOD1 Missense_Mutation p.L474V 0.13 tolerated(0.65) benign(0.001) TCGA-60-2698-01 12 100594776 100594776 A G ACTR6 Intron 0.29 TCGA-60-2698-01 12 100904848 100904848 T A NR1H4 Missense_Mutation p.D134E 0.30 tolerated(1) benign(0.001) TCGA-60-2698-01 12 100926286 100926287 GG A NR1H4 Frame_Shift_Del p.G176Rfs*5 0.23 TCGA-60-2698-01 12 101763603 101763603 G A UTP20 Silent p.L2163L 0.15 TCGA-60-2698-01 12 102116979 102116979 G A CHPT1 Missense_Mutation p.G272R 0.05 deleterious(0.01) probably_damaging(0.984) TCGA-60-2698-01 12 102158651 102158651 C A GNPTAB Missense_Mutation p.D682Y 0.16 tolerated(0.07) benign(0.003) TCGA-60-2698-01 12 10270913 10270913 C T CLEC7A 3'UTR 0.16 TCGA-60-2698-01 12 112318306 112318306 C A MAPKAPK5 Nonsense_Mutation p.S212* 0.32 TCGA-60-2698-01 12 113307575 113307575 G C RPH3A Missense_Mutation p.D208H 0.26 tolerated(0.56) benign(0.245) TCGA-60-2698-01 12 113553030 113553030 G C RASAL1 Missense_Mutation p.S348C 0.08 deleterious(0) probably_damaging(0.978) TCGA-60-2698-01 12 116408434 116408434 T A MED13L Missense_Mutation p.N2011I 0.10 deleterious(0.02) probably_damaging(0.961) TCGA-60-2698-01 12 117610273 117610273 C T FBXO21 Intron 0.16 TCGA-60-2698-01 12 117680494 117680494 G T NOS1 Missense_Mutation p.H1027Q 0.16 deleterious(0.01) benign(0.178) TCGA-60-2698-01 12 120576213 120576213 C T GCN1L1 Missense_Mutation p.E2055K 0.25 benign(0.011) TCGA-60-2698-01 12 120884281 120884281 G T GATC 5'UTR 0.25 TCGA-60-2698-01 12 122107252 122107252 C T MORN3 Silent p.V46V 0.14 TCGA-60-2698-01 12 123042002 123042002 G C KNTC1 Missense_Mutation p.Q448H 0.25 tolerated(0.23) benign(0.063) TCGA-60-2698-01 12 123201053 123201053 T A HCAR3 Missense_Mutation p.I78F 0.07 tolerated(0.44) benign(0.056) TCGA-60-2698-01 12 125465293 125465293 C G DHX37 Missense_Mutation p.E161Q 0.36 tolerated(0.25) benign(0.004) TCGA-60-2698-01 12 129278733 129278733 C T SLC15A4 3'UTR 0.09 TCGA-60-2698-01 12 129467578 129467578 G T GLT1D1 Silent p.V248V 0.20 TCGA-60-2698-01 12 129467579 129467579 G T GLT1D1 Nonsense_Mutation p.E249* 0.21 TCGA-60-2698-01 12 129558466 129558466 C T TMEM132D Missense_Mutation p.C1085Y 0.14 tolerated(0.18) benign(0.005) TCGA-60-2698-01 12 131602941 131602941 C G GPR133 Missense_Mutation p.L685V 0.16 tolerated(0.65) benign(0.009) TCGA-60-2698-01 12 132611043 132611043 C T RP13-977J11.5 RNA 0.36 TCGA-60-2698-01 12 132636740 132636740 G A NOC4L Missense_Mutation p.E477K 0.30 deleterious(0) possibly_damaging(0.509) TCGA-60-2698-01 12 15095465 15095465 C T ARHGDIB Nonsense_Mutation p.W199* 0.05 TCGA-60-2698-01 12 15732973 15732973 A G PTPRO Missense_Mutation p.Y974C 0.31 deleterious(0) probably_damaging(1) TCGA-60-2698-01 12 15784501 15784501 G C EPS8 Missense_Mutation p.S640C 0.41 tolerated(0.07) benign(0.005) TCGA-60-2698-01 12 18854647 18854647 T A PLCZ1 Nonsense_Mutation p.R310* 0.59 TCGA-60-2698-01 12 1987508 1987508 G T CACNA2D4 Silent p.I564I 0.62 TCGA-60-2698-01 12 21008097 21008097 G A LST3 Missense_Mutation p.E74K 0.09 deleterious(0) probably_damaging(1) TCGA-60-2698-01 12 2113645 2113645 C G DCP1B 5'UTR 0.28 TCGA-60-2698-01 12 21788342 21788342 T G LDHB 3'UTR 0.07 TCGA-60-2698-01 12 21919017 21919017 G A KCNJ8 Silent p.I305I 0.05 TCGA-60-2698-01 12 25679755 25679755 G - IFLTD1 Frame_Shift_Del p.S209Ffs*10 0.20 TCGA-60-2698-01 12 2786995 2786995 G C CACNA1C Missense_Mutation p.E1733Q 0.06 deleterious(0.05) benign(0.209) TCGA-60-2698-01 12 3040350 3040350 G C TULP3 Missense_Mutation p.D214H 0.28 deleterious(0) probably_damaging(0.984) TCGA-60-2698-01 12 32975454 32975454 C T PKP2 Missense_Mutation p.D640N 0.04 tolerated(0.23) benign(0.015) TCGA-60-2698-01 12 39726900 39726900 G C KIF21A Missense_Mutation p.L833V 0.14 deleterious(0.01) probably_damaging(0.986) TCGA-60-2698-01 12 39980068 39980068 G C ABCD2 Missense_Mutation p.Q560E 0.38 deleterious(0) probably_damaging(1) TCGA-60-2698-01 12 40619421 40619421 G A LRRK2 Missense_Mutation p.M72I 0.04 tolerated(0.76) benign(0) TCGA-60-2698-01 12 40689242 40689242 T G LRRK2 Silent p.L964L 0.05 TCGA-60-2698-01 12 41410677 41410677 G C CNTN1 Missense_Mutation p.G793A 0.11 deleterious(0) probably_damaging(1) TCGA-60-2698-01 12 4385331 4385331 C - CCND2 Frame_Shift_Del p.A120Rfs*28 0.39 TCGA-60-2698-01 12 45568035 45568035 C A PLEKHA8P1 RNA 0.41 TCGA-60-2698-01 12 46123889 46123889 C T ARID2 Missense_Mutation p.T52I 0.41 tolerated(0.49) benign(0.219) TCGA-60-2698-01 12 46245204 46245204 C G ARID2 Missense_Mutation p.Q1100E 0.08 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-60-2698-01 12 4725047 4725047 G A AKAP3 Missense_Mutation p.S807L 0.33 deleterious(0.02) possibly_damaging(0.876) TCGA-60-2698-01 12 48084348 48084348 C T RPAP3 Missense_Mutation p.R207Q 0.20 deleterious(0) benign(0.282) TCGA-60-2698-01 12 48131351 48131351 C T RAPGEF3 Silent p.%3D 0.26 TCGA-60-2698-01 12 48457586 48457586 C T SENP1 Silent p.G438G 0.18 TCGA-60-2698-01 12 49442443 49442443 T C KMT2D Missense_Mutation p.Q1377R 0.37 probably_damaging(0.978) TCGA-60-2698-01 12 49488131 49488131 C A DHH Silent p.R55R 0.17 TCGA-60-2698-01 12 49488136 49488136 C G DHH Missense_Mutation p.E54Q 0.15 deleterious(0) probably_damaging(0.998) TCGA-60-2698-01 12 49724769 49724769 C G TROAP Intron 0.10 TCGA-60-2698-01 12 49999151 49999151 A G FAM186B Intron 0.47 TCGA-60-2698-01 12 50356011 50356011 G T AQP5 Missense_Mutation p.A71S 0.31 deleterious(0) probably_damaging(1) TCGA-60-2698-01 12 50482376 50482376 G A SMARCD1 Missense_Mutation p.E243K 0.10 deleterious(0.01) possibly_damaging(0.723) TCGA-60-2698-01 12 51639944 51639944 G C DAZAP2 3'Flank 0.05 TCGA-60-2698-01 12 52099357 52099357 G A SCN8A Missense_Mutation p.E431K 0.08 tolerated(0.32) probably_damaging(0.977) TCGA-60-2698-01 12 52760965 52760965 G T KRT85 Silent p.S75S 0.23 TCGA-60-2698-01 12 53590369 53590369 G T ITGB7 Silent p.L270L 0.29 TCGA-60-2698-01 12 53689355 53689355 G T PFDN5 Missense_Mutation p.A2S 0.27 tolerated(0.17) possibly_damaging(0.563) TCGA-60-2698-01 12 53818148 53818148 G A AMHR2 Silent p.L42L 0.40 TCGA-60-2698-01 12 54423608 54423608 G T HOXC6 Missense_Mutation p.Q190H 0.21 deleterious(0) probably_damaging(0.997) TCGA-60-2698-01 12 54902176 54902176 C G NCKAP1L Missense_Mutation p.L123V 0.09 tolerated(0.75) benign(0.013) TCGA-60-2698-01 12 56233310 56233310 C G MMP19 Missense_Mutation p.D246H 0.14 deleterious(0) probably_damaging(1) TCGA-60-2698-01 12 56527954 56527954 C G ESYT1 Missense_Mutation p.Q522E 0.17 tolerated(0.26) benign(0.039) TCGA-60-2698-01 12 56600432 56600432 G T RNF41 Missense_Mutation p.H251Q 0.19 deleterious(0.02) probably_damaging(0.979) TCGA-60-2698-01 12 57884123 57884123 C G MARS Silent p.P208P 0.06 TCGA-60-2698-01 12 62104049 62104049 G A FAM19A2 3'UTR 0.37 TCGA-60-2698-01 12 62954271 62954271 G A MON2 Missense_Mutation p.G1137E 0.12 tolerated(0.11) possibly_damaging(0.666) TCGA-60-2698-01 12 62972245 62972245 C T MON2 Missense_Mutation p.S1512F 0.08 deleterious(0.01) benign(0.436) TCGA-60-2698-01 12 63540999 63540999 A T AVPR1A 3'UTR 0.46 TCGA-60-2698-01 12 7525937 7525937 C G CD163L1 Missense_Mutation p.E1237Q 0.18 deleterious(0) probably_damaging(1) TCGA-60-2698-01 12 7586033 7586033 G C CD163L1 Missense_Mutation p.Q128E 0.04 tolerated(1) benign(0.085) TCGA-60-2698-01 12 75893557 75893557 G C KRR1 3'UTR 0.08 TCGA-60-2698-01 12 80663890 80663890 C G OTOGL Nonsense_Mutation p.S816* 0.12 TCGA-60-2698-01 12 81111108 81111108 C G MYF5 Missense_Mutation p.T89S 0.11 deleterious(0) probably_damaging(0.999) TCGA-60-2698-01 12 85255544 85255544 G C SLC6A15 Missense_Mutation p.S687C 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-60-2698-01 12 88390363 88390363 T C C12orf50 Missense_Mutation p.E117G 0.23 deleterious(0) possibly_damaging(0.547) TCGA-60-2698-01 12 88420369 88420369 G A C12orf50 Missense_Mutation p.S10L 0.29 tolerated(0.15) probably_damaging(0.999) TCGA-60-2698-01 12 94543548 94543548 C G PLXNC1 Missense_Mutation p.I267M 0.12 tolerated(0.13) benign(0.168) TCGA-60-2698-01 12 94575247 94575247 C G PLXNC1 Nonsense_Mutation p.S410* 0.10 TCGA-60-2698-01 12 968625 968625 G A WNK1 Missense_Mutation p.E539K 0.30 deleterious(0) unknown(0) TCGA-60-2698-01 12 993358 993358 G A WNK1 Missense_Mutation p.E1265K 0.07 deleterious(0) probably_damaging(0.998) TCGA-60-2698-01 12 994443 994443 A G WNK1 Silent p.S1491S 0.04 TCGA-60-2698-01 13 110434648 110434648 G C IRS2 Silent p.L1251L 0.51 TCGA-60-2698-01 13 110829259 110829259 C A COL4A1 Missense_Mutation p.G948C 0.41 benign(0.034) TCGA-60-2698-01 13 110829260 110829260 C A COL4A1 Missense_Mutation p.K947N 0.43 benign(0.006) TCGA-60-2698-01 13 111532094 111532094 C T ANKRD10 Missense_Mutation p.E385K 0.07 deleterious(0) probably_damaging(0.993) TCGA-60-2698-01 13 113479828 113479828 G A ATP11A Silent p.Q319Q 0.06 TCGA-60-2698-01 13 113527915 113527915 G C ATP11A Missense_Mutation p.W1029S 0.14 deleterious(0.03) possibly_damaging(0.459) TCGA-60-2698-01 13 115090626 115090626 C G CHAMP1 Missense_Mutation p.P437A 0.56 deleterious(0.04) possibly_damaging(0.661) TCGA-60-2698-01 13 25067872 25067872 C T PARP4 Splice_Site p.X248_splice 0.04 TCGA-60-2698-01 13 25831403 25831403 C T MTMR6 Silent p.R342R 0.53 TCGA-60-2698-01 13 26788682 26788682 G C RNF6 Missense_Mutation p.S446C 0.06 deleterious(0) probably_damaging(0.999) TCGA-60-2698-01 13 26971323 26971323 A G CDK8 Silent p.E298E 0.05 TCGA-60-2698-01 13 28841288 28841288 C G PAN3 Missense_Mutation p.Q544E 0.04 tolerated(0.14) benign(0.321) TCGA-60-2698-01 13 28866812 28866812 G C PAN3 3'Flank 0.44 TCGA-60-2698-01 13 29001395 29001395 A T FLT1 Missense_Mutation p.L446Q 0.51 tolerated(0.34) probably_damaging(0.949) TCGA-60-2698-01 13 32786485 32786485 G A FRY Missense_Mutation p.E1550K 0.48 tolerated(0.62) benign(0.021) TCGA-60-2698-01 13 34392285 34392285 C G RFC3 5'UTR 0.08 TCGA-60-2698-01 13 40175055 40175055 G A LHFP Missense_Mutation p.A100V 0.04 deleterious(0) probably_damaging(0.965) TCGA-60-2698-01 13 41706348 41706348 G C KBTBD6 Missense_Mutation p.F100L 0.07 deleterious(0) probably_damaging(0.999) TCGA-60-2698-01 13 41826881 41826881 G A MTRF1 Silent p.I199I 0.08 TCGA-60-2698-01 13 43362793 43362793 C T FAM216B Missense_Mutation p.S96L 0.13 tolerated(0.08) benign(0.028) TCGA-60-2698-01 13 44971456 44971456 A C SERP2 3'UTR 0.54 TCGA-60-2698-01 13 73396017 73396017 G A PIBF1 Missense_Mutation p.E235K 0.27 deleterious(0.01) benign(0.073) TCGA-60-2698-01 13 77759384 77759384 G A MYCBP2 Nonsense_Mutation p.Q1487* 0.06 TCGA-60-2698-01 13 79216305 79216305 C T RNF219 Silent p.R84R 0.04 TCGA-60-2698-01 13 88329558 88329558 C A SLITRK5 Missense_Mutation p.P639T 0.05 tolerated(0.22) benign(0.001) TCGA-60-2698-01 13 92345877 92345877 G T GPC5 Missense_Mutation p.K254N 0.48 deleterious(0) possibly_damaging(0.785) TCGA-60-2698-01 13 97485146 97485146 C T HS6ST3 Silent p.L370L 0.14 TCGA-60-2698-01 13 99907182 99907182 G C GPR18 Missense_Mutation p.F315L 0.29 tolerated(0.47) benign(0.002) TCGA-60-2698-01 14 100615443 100615443 G A DEGS2 Silent p.F229F 0.43 TCGA-60-2698-01 14 101201015 101201015 G A DLK1 Missense_Mutation p.V312M 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-60-2698-01 14 102391487 102391487 G C PPP2R5C Missense_Mutation p.D516H 0.15 deleterious(0.03) possibly_damaging(0.712) TCGA-60-2698-01 14 103470347 103470347 C T CDC42BPB Missense_Mutation p.R122Q 0.12 tolerated(0.11) probably_damaging(0.946) TCGA-60-2698-01 14 105945519 105945519 G T CRIP2 Missense_Mutation p.R229L 0.20 tolerated(0.06) probably_damaging(0.997) TCGA-60-2698-01 14 20852761 20852761 G T TEP1 Silent p.R1073R 0.19 TCGA-60-2698-01 14 21167599 21167599 C G RNASE4 Silent p.V23V 0.15 TCGA-60-2698-01 14 21993371 21993371 G C SALL2 Missense_Mutation p.P164R 0.06 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-60-2698-01 14 24601642 24601642 C G FITM1 Missense_Mutation p.H163Q 0.14 tolerated(0.36) benign(0.069) TCGA-60-2698-01 14 24684816 24684816 C A MDP1 Missense_Mutation p.V51L 0.04 deleterious(0.01) probably_damaging(0.937) TCGA-60-2698-01 14 31071217 31071217 A T G2E3 Missense_Mutation p.K297I 0.13 deleterious(0.01) possibly_damaging(0.613) TCGA-60-2698-01 14 35002695 35002695 C T EAPP Missense_Mutation p.D103N 0.37 tolerated(0.08) benign(0.334) TCGA-60-2698-01 14 42356460 42356460 C G LRFN5 Missense_Mutation p.P211R 0.12 deleterious(0) probably_damaging(1) TCGA-60-2698-01 14 44975323 44975323 G A FSCB Missense_Mutation p.H290Y 0.05 tolerated(1) benign(0.014) TCGA-60-2698-01 14 45585317 45585317 C G FKBP3 3'UTR 0.35 TCGA-60-2698-01 14 51290133 51290133 G A NIN Intron 0.15 TCGA-60-2698-01 14 52164869 52164869 C T FRMD6 Silent p.L37L 0.20 TCGA-60-2698-01 14 55475407 55475407 C G WDHD1 Missense_Mutation p.M124I 0.33 tolerated(0.28) benign(0.028) TCGA-60-2698-01 14 58604887 58604887 G A C14orf37 Missense_Mutation p.S397F 0.36 deleterious(0.03) possibly_damaging(0.683) TCGA-60-2698-01 14 58895097 58895097 G A KIAA0586 Missense_Mutation p.E51K 0.06 tolerated(0.09) benign(0.023) TCGA-60-2698-01 14 60193809 60193809 C A RTN1 Missense_Mutation p.Q531H 0.37 tolerated(0.18) benign(0.002) TCGA-60-2698-01 14 64519092 64519092 A T SYNE2 Nonsense_Mutation p.K2821* 0.09 TCGA-60-2698-01 14 64595260 64595260 G A SYNE2 Missense_Mutation p.E4670K 0.17 benign(0.076) TCGA-60-2698-01 14 64908778 64908778 C G MTHFD1 Missense_Mutation p.P631A 0.19 deleterious(0) probably_damaging(0.999) TCGA-60-2698-01 14 68189388 68189388 C T RDH12 Missense_Mutation p.S10F 0.03 tolerated(0.69) unknown(0) TCGA-60-2698-01 14 68234552 68234552 C G ZFYVE26 Missense_Mutation p.D1887H 0.06 deleterious(0.03) benign(0.004) TCGA-60-2698-01 14 71500230 71500230 C T PCNX Nonsense_Mutation p.Q1215* 0.31 TCGA-60-2698-01 14 74823770 74823770 G T VRTN Missense_Mutation p.W95L 0.11 tolerated(0.51) probably_damaging(0.997) TCGA-60-2698-01 14 75747808 75747808 C A FOS Missense_Mutation p.P275Q 0.28 tolerated(0.07) benign(0.009) TCGA-60-2698-01 14 88651788 88651788 A T KCNK10 3'UTR 0.11 TCGA-60-2698-01 14 92588099 92588099 G A NDUFB1 Missense_Mutation p.S8F 0.14 tolerated_low_confidence(1) possibly_damaging(0.683) TCGA-60-2698-01 14 95107883 95107883 C A SERPINA13P RNA 0.26 TCGA-60-2698-01 14 95578573 95578573 C G DICER1 Missense_Mutation p.M684I 0.03 deleterious(0.01) probably_damaging(0.91) TCGA-60-2698-01 14 95582871 95582871 G C DICER1 Missense_Mutation p.I557M 0.13 tolerated(0.1) possibly_damaging(0.668) TCGA-60-2698-01 14 95912339 95912339 C G SYNE3 Missense_Mutation p.E513D 0.43 tolerated(0.15) benign(0.115) TCGA-60-2698-01 14 95932538 95932538 C G SYNE3 Silent p.L119L 0.33 TCGA-60-2698-01 15 20658754 20658754 C A HERC2P3 Intron 0.35 TCGA-60-2698-01 15 22382511 22382511 C A OR4N4 Silent p.I13I 0.17 TCGA-60-2698-01 15 25337003 25337003 C T SNORD116-23 RNA 0.04 TCGA-60-2698-01 15 25474008 25474008 C G SNORD115-33 5'Flank 0.23 TCGA-60-2698-01 15 26026323 26026323 C - ATP10A Frame_Shift_Del p.G166Efs*41 0.16 TCGA-60-2698-01 15 27182355 27182355 G A GABRA5 Missense_Mutation p.V202I 0.26 tolerated(0.88) benign(0.021) TCGA-60-2698-01 15 27572057 27572057 G T GABRG3 Silent p.G124G 0.06 TCGA-60-2698-01 15 28202874 28202874 C T OCA2 Silent p.K548K 0.09 TCGA-60-2698-01 15 28491051 28491051 C T HERC2 Missense_Mutation p.E1185K 0.18 benign(0.001) TCGA-60-2698-01 15 29367139 29367139 G T APBA2 Nonsense_Mutation p.E323* 0.11 TCGA-60-2698-01 15 30665278 30665278 C A CHRFAM7A Missense_Mutation p.K77N 0.11 deleterious(0) probably_damaging(0.989) TCGA-60-2698-01 15 32935813 32935813 C G SCG5 Missense_Mutation p.S7C 0.26 tolerated_low_confidence(0.1) benign(0.006) TCGA-60-2698-01 15 33895559 33895559 T G RYR3 Missense_Mutation p.W720G 0.23 probably_damaging(1) TCGA-60-2698-01 15 34647258 34647258 C G NUTM1 Missense_Mutation p.L439V 0.15 tolerated(0.05) possibly_damaging(0.856) TCGA-60-2698-01 15 40849575 40849575 G C C15orf57 Intron 0.11 TCGA-60-2698-01 15 41555038 41555038 G A CHP1 Silent p.V102V 0.25 TCGA-60-2698-01 15 41812753 41812753 A T RPAP1 Missense_Mutation p.Y1211N 0.14 deleterious(0) probably_damaging(0.994) TCGA-60-2698-01 15 42139651 42139651 C T PLA2G4B Silent p.T919T 0.06 TCGA-60-2698-01 15 42178428 42178428 C T SPTBN5 Missense_Mutation p.R342Q 0.22 possibly_damaging(0.887) TCGA-60-2698-01 15 42727711 42727711 C T ZNF106 Silent p.R1561R 0.05 TCGA-60-2698-01 15 43026155 43026155 G A CDAN1 Missense_Mutation p.H450Y 0.21 deleterious(0) probably_damaging(0.946) TCGA-60-2698-01 15 43888851 43888851 C T CKMT1B Intron 0.24 TCGA-60-2698-01 15 44149268 44149268 C T WDR76 Missense_Mutation p.S439F 0.07 deleterious(0) possibly_damaging(0.459) TCGA-60-2698-01 15 45003702 45003702 C A B2M 5'UTR 0.20 TCGA-60-2698-01 15 45779760 45779760 C T SLC30A4 Missense_Mutation p.R322Q 0.29 tolerated(0.11) benign(0.292) TCGA-60-2698-01 15 48541786 48541786 A G SLC12A1 Missense_Mutation p.I567V 0.21 deleterious(0) probably_damaging(0.996) TCGA-60-2698-01 15 48591428 48591428 C A SLC12A1 Missense_Mutation p.P1018T 0.29 deleterious(0) probably_damaging(0.987) TCGA-60-2698-01 15 49170360 49170360 G C EID1 5'UTR 0.17 TCGA-60-2698-01 15 50904981 50904981 C T TRPM7 Missense_Mutation p.E606K 0.12 tolerated(0.14) benign(0.001) TCGA-60-2698-01 15 55611423 55611423 C T PIGB 5'UTR 0.60 TCGA-60-2698-01 15 55651990 55651990 G A CCPG1 Nonsense_Mutation p.Q661* 0.15 TCGA-60-2698-01 15 55669255 55669255 C T CCPG1 Missense_Mutation p.E116K 0.12 deleterious(0) possibly_damaging(0.69) TCGA-60-2698-01 15 58247467 58247467 C A ALDH1A2 Missense_Mutation p.M495I 0.22 deleterious(0.01) benign(0.052) TCGA-60-2698-01 15 58247468 58247468 C T ALDH1A2 Splice_Site p.X495_splice 0.22 TCGA-60-2698-01 15 58925402 58925402 C A ADAM10 Missense_Mutation p.G390V 0.15 deleterious(0) probably_damaging(1) TCGA-60-2698-01 15 59519720 59519720 G C MYO1E Missense_Mutation p.L194V 0.30 deleterious(0) benign(0.43) TCGA-60-2698-01 15 59911741 59911741 G A GCNT3 Missense_Mutation p.G435E 0.10 tolerated(0.16) benign(0.06) TCGA-60-2698-01 15 62993335 62993335 G A TLN2 Missense_Mutation p.D540N 0.08 deleterious(0) probably_damaging(0.937) TCGA-60-2698-01 15 65489732 65489732 C T CILP Silent p.L964L 0.16 TCGA-60-2698-01 15 65676325 65676325 A T IGDCC4 3'UTR 0.29 TCGA-60-2698-01 15 71188191 71188191 G C LRRC49 Missense_Mutation p.E42Q 0.13 tolerated_low_confidence(0.07) benign(0.05) TCGA-60-2698-01 15 72668332 72668332 C G HEXA 5'UTR 0.06 TCGA-60-2698-01 15 73418810 73418810 C G NEO1 Silent p.V259V 0.26 TCGA-60-2698-01 15 75655061 75655061 C G MAN2C1 Silent p.V273V 0.16 TCGA-60-2698-01 15 78212132 78212132 T C RP11-114H24.7 Intron 0.29 TCGA-60-2698-01 15 78563008 78563008 G C DNAJA4 Missense_Mutation p.R130T 0.24 tolerated(0.11) benign(0.249) TCGA-60-2698-01 15 78921717 78921717 G A CHRNB4 Silent p.I310I 0.15 TCGA-60-2698-01 15 79749984 79749984 A C KIAA1024 Missense_Mutation p.S499R 0.27 tolerated(0.22) benign(0.1) TCGA-60-2698-01 15 80465390 80465390 C T FAH Silent p.L247L 0.18 TCGA-60-2698-01 15 84651319 84651319 A T ADAMTSL3 Missense_Mutation p.Y980F 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-60-2698-01 15 99500708 99500708 G A IGF1R 3'UTR 0.07 TCGA-60-2698-01 16 1129885 1129885 G C SSTR5 Missense_Mutation p.R339S 0.12 tolerated(0.19) benign(0.014) TCGA-60-2698-01 16 1388632 1388632 G A BAIAP3 Missense_Mutation p.D63N 0.19 tolerated_low_confidence(0.06) benign(0.09) TCGA-60-2698-01 16 18840913 18840913 G A SMG1 Nonsense_Mutation p.Q3100* 0.31 TCGA-60-2698-01 16 1961753 1961753 G C HS3ST6 Silent p.L258L 0.23 TCGA-60-2698-01 16 20395985 20395985 C G PDILT Missense_Mutation p.E131Q 0.13 tolerated(0.19) benign(0.027) TCGA-60-2698-01 16 22134981 22134981 G C VWA3A Missense_Mutation p.W495C 0.04 deleterious(0) probably_damaging(0.999) TCGA-60-2698-01 16 23766387 23766387 C A CHP2 Missense_Mutation p.S6Y 0.13 deleterious(0) probably_damaging(0.934) TCGA-60-2698-01 16 24105581 24105581 G C PRKCB Missense_Mutation p.G262R 0.08 deleterious(0.02) possibly_damaging(0.758) TCGA-60-2698-01 16 27221549 27221549 G T KDM8 Missense_Mutation p.L73F 0.32 deleterious(0.01) probably_damaging(0.98) TCGA-60-2698-01 16 29819011 29819011 C T MAZ Missense_Mutation p.S302L 0.15 deleterious(0.01) possibly_damaging(0.776) TCGA-60-2698-01 16 30536455 30536455 G T ZNF768 Missense_Mutation p.Q336K 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.887) TCGA-60-2698-01 16 3077675 3077675 C T THOC6 3'UTR 0.12 TCGA-60-2698-01 16 30964632 30964632 C A ORAI3 Missense_Mutation p.L119M 0.04 tolerated(0.07) probably_damaging(0.97) TCGA-60-2698-01 16 31374072 31374072 C T ITGAX Nonsense_Mutation p.Q453* 0.10 TCGA-60-2698-01 16 31487877 31487877 G C TGFB1I1 Missense_Mutation p.D322H 0.21 deleterious(0.04) possibly_damaging(0.642) TCGA-60-2698-01 16 32893883 32893883 C T RP11-989E6.3 5'Flank 0.04 TCGA-60-2698-01 16 3304210 3304210 C A MEFV Silent p.G286G 0.16 TCGA-60-2698-01 16 4431739 4431739 C A VASN Missense_Mutation p.F287L 0.12 tolerated(0.1) benign(0.015) TCGA-60-2698-01 16 46697018 46697018 G A VPS35 Silent p.I568I 0.51 TCGA-60-2698-01 16 4802659 4802659 C G ZNF500 Silent p.G387G 0.13 TCGA-60-2698-01 16 48395889 48395889 G C SIAH1 Missense_Mutation p.Q182E 0.06 tolerated(0.71) benign(0.001) TCGA-60-2698-01 16 49557553 49557553 G T ZNF423 Missense_Mutation p.F1269L 0.07 deleterious(0) probably_damaging(0.945) TCGA-60-2698-01 16 5061152 5061152 C - SEC14L5 Frame_Shift_Del p.S622Afs*14 0.29 TCGA-60-2698-01 16 57998082 57998082 G T CNGB1 Missense_Mutation p.S81Y 0.12 tolerated_low_confidence(1) benign(0.198) TCGA-60-2698-01 16 58287906 58287906 G A CCDC113 Missense_Mutation p.R78Q 0.06 deleterious(0.03) possibly_damaging(0.859) TCGA-60-2698-01 16 67241837 67241837 C T LRRC29 Missense_Mutation p.A148T 0.17 tolerated(0.07) probably_damaging(0.955) TCGA-60-2698-01 16 67578699 67578699 G T FAM65A Missense_Mutation p.R965S 0.07 tolerated(0.25) benign(0.227) TCGA-60-2698-01 16 67671757 67671757 C G CTCF Silent p.L722L 0.11 TCGA-60-2698-01 16 68373336 68373336 G A PRMT7 Missense_Mutation p.G206R 0.49 deleterious(0) possibly_damaging(0.552) TCGA-60-2698-01 16 69154385 69154385 C G CHTF8 Missense_Mutation p.K103N 0.04 deleterious(0) probably_damaging(1) TCGA-60-2698-01 16 69704161 69704161 A T NFAT5 Missense_Mutation p.E509D 0.05 possibly_damaging(0.866) TCGA-60-2698-01 16 70818111 70818111 C G VAC14 Missense_Mutation p.E167Q 0.48 deleterious(0) probably_damaging(0.981) TCGA-60-2698-01 16 71317774 71317774 C T CMTR2 Missense_Mutation p.A684T 0.04 tolerated(0.17) benign(0.016) TCGA-60-2698-01 16 71663343 71663343 G C MARVELD3 Missense_Mutation p.E181Q 0.04 deleterious(0.01) probably_damaging(0.997) TCGA-60-2698-01 16 71668506 71668506 G T MARVELD3 Intron 0.06 TCGA-60-2698-01 16 71674663 71674663 C G MARVELD3 Silent p.L322L 0.41 TCGA-60-2698-01 16 71748541 71748541 G A PHLPP2 Missense_Mutation p.S53F 0.07 deleterious_low_confidence(0.05) benign(0.172) TCGA-60-2698-01 16 72138519 72138519 C T DHX38 Silent p.F715F 0.04 TCGA-60-2698-01 16 72158677 72158677 C A PMFBP1 Missense_Mutation p.D860Y 0.45 deleterious(0.01) possibly_damaging(0.857) TCGA-60-2698-01 16 726323 726323 C T RHBDL1 Silent p.G74G 0.35 TCGA-60-2698-01 16 75563946 75563946 C T CHST5 Missense_Mutation p.A113T 0.53 deleterious(0) probably_damaging(0.991) TCGA-60-2698-01 16 76528891 76528891 G A CNTNAP4 Missense_Mutation p.C649Y 0.05 deleterious(0) probably_damaging(0.992) TCGA-60-2698-01 16 80666953 80666953 G C CDYL2 Missense_Mutation p.S266C 0.43 deleterious(0) probably_damaging(1) TCGA-60-2698-01 16 81194499 81194499 G A PKD1L2 RNA 0.25 TCGA-60-2698-01 16 84024221 84024221 G A NECAB2 Silent p.Q194Q 0.09 TCGA-60-2698-01 16 84270759 84270759 G A KCNG4 Silent p.F111F 0.49 TCGA-60-2698-01 16 86544562 86544562 G T FOXF1 Missense_Mutation p.E129D 0.04 deleterious(0.01) probably_damaging(0.912) TCGA-60-2698-01 16 87446239 87446239 C G ZCCHC14 Missense_Mutation p.M559I 0.43 tolerated(0.63) benign(0.003) TCGA-60-2698-01 16 89650455 89650455 C T CPNE7 Missense_Mutation p.S226L 0.50 deleterious(0.05) benign(0.189) TCGA-60-2698-01 16 90020690 90020690 C T DEF8 Silent p.F71F 0.14 TCGA-60-2698-01 17 10295205 10295205 C A MYH8 Missense_Mutation p.E1886D 0.06 deleterious(0.01) possibly_damaging(0.533) TCGA-60-2698-01 17 10312884 10312884 G A MYH8 Silent p.L537L 0.16 TCGA-60-2698-01 17 10315812 10315812 C A MYH8 Missense_Mutation p.A431S 0.35 tolerated(0.37) benign(0.015) TCGA-60-2698-01 17 10411765 10411765 C T MYH1 Silent p.L604L 0.40 TCGA-60-2698-01 17 10440603 10440603 G C MYH2 Missense_Mutation p.S615C 0.12 deleterious(0.01) benign(0.085) TCGA-60-2698-01 17 10537469 10537469 C T MYH3 Missense_Mutation p.E1463K 0.04 deleterious(0.01) probably_damaging(0.989) TCGA-60-2698-01 17 11572751 11572751 G C DNAH9 Missense_Mutation p.R998T 0.43 benign(0) TCGA-60-2698-01 17 11631152 11631152 C A DNAH9 Nonsense_Mutation p.Y1909* 0.46 TCGA-60-2698-01 17 18167409 18167409 C A MIEF2 Missense_Mutation p.F243L 0.45 deleterious(0) possibly_damaging(0.781) TCGA-60-2698-01 17 18167821 18167821 C T MIEF2 Silent p.L381L 0.39 TCGA-60-2698-01 17 19232925 19232925 C T EPN2 Missense_Mutation p.S459F 0.04 deleterious(0) probably_damaging(0.971) TCGA-60-2698-01 17 26881331 26881331 G A PIGS Silent p.L525L 0.04 TCGA-60-2698-01 17 27901841 27901841 G T GIT1 Missense_Mutation p.P731Q 0.22 tolerated(0.51) benign(0.051) TCGA-60-2698-01 17 27936431 27936431 G A ANKRD13B Missense_Mutation p.E272K 0.10 deleterious(0.02) possibly_damaging(0.801) TCGA-60-2698-01 17 29120551 29120551 C G CRLF3 Missense_Mutation p.R248T 0.25 deleterious(0) possibly_damaging(0.677) TCGA-60-2698-01 17 29185178 29185178 G T ATAD5 Splice_Site p.X932_splice 0.19 TCGA-60-2698-01 17 29226163 29226163 C G TEFM 3'UTR 0.13 TCGA-60-2698-01 17 29227467 29227467 C T TEFM Missense_Mutation p.M203I 0.09 tolerated(0.13) benign(0.004) TCGA-60-2698-01 17 29261292 29261292 C T ADAP2 Silent p.L163L 0.29 TCGA-60-2698-01 17 29587397 29587397 G C NF1 Missense_Mutation p.D1481H 0.04 deleterious(0.02) probably_damaging(0.996) TCGA-60-2698-01 17 30611719 30611719 C T RHBDL3 Silent p.F59F 0.39 TCGA-60-2698-01 17 31355356 31355356 C G ASIC2 Missense_Mutation p.D348H 0.09 deleterious(0) probably_damaging(0.964) TCGA-60-2698-01 17 3195694 3195694 G T OR3A1 Silent p.P61P 0.39 TCGA-60-2698-01 17 3392563 3392563 G C ASPA Silent p.L187L 0.05 TCGA-60-2698-01 17 34416616 34416616 C G CCL3 Missense_Mutation p.C34S 0.32 deleterious(0) probably_damaging(0.998) TCGA-60-2698-01 17 3495371 3495371 T G SHPK Missense_Mutation p.T92P 0.38 tolerated(0.23) benign(0.16) TCGA-60-2698-01 17 35980966 35980966 C T DDX52 Missense_Mutation p.G510E 0.31 deleterious(0) probably_damaging(1) TCGA-60-2698-01 17 37188619 37188619 C T LRRC37A11P RNA 0.35 TCGA-60-2698-01 17 37199498 37199498 C T LRRC37A11P RNA 0.31 TCGA-60-2698-01 17 3724582 3724582 C A C17orf85 Missense_Mutation p.D321Y 0.40 deleterious(0) probably_damaging(0.995) TCGA-60-2698-01 17 37373068 37373068 G T STAC2 Missense_Mutation p.P194H 0.45 deleterious(0.01) probably_damaging(0.99) TCGA-60-2698-01 17 37949016 37949016 T G IKZF3 Silent p.R112R 0.13 TCGA-60-2698-01 17 38152561 38152561 C A PSMD3 Missense_Mutation p.F482L 0.15 deleterious(0.02) probably_damaging(0.996) TCGA-60-2698-01 17 38230776 38230776 C G THRA Nonsense_Mutation p.S12* 0.12 TCGA-60-2698-01 17 38421164 38421164 C T WIPF2 Nonsense_Mutation p.Q246* 0.04 TCGA-60-2698-01 17 3846764 3846764 C A ATP2A3 Missense_Mutation p.C447F 0.40 deleterious(0) possibly_damaging(0.894) TCGA-60-2698-01 17 38956043 38956043 C A KRT28 Missense_Mutation p.A35S 0.08 tolerated(0.24) benign(0.009) TCGA-60-2698-01 17 39023065 39023065 T A KRT12 Missense_Mutation p.E125V 0.05 deleterious(0) probably_damaging(0.979) TCGA-60-2698-01 17 39580242 39580242 G T KRT37 Intron 0.18 TCGA-60-2698-01 17 3981258 3981258 T A ZZEF1 Missense_Mutation p.S970C 0.39 deleterious(0) probably_damaging(0.993) TCGA-60-2698-01 17 39883619 39883619 C T HAP1 Intron 0.17 TCGA-60-2698-01 17 40030069 40030069 C T ACLY Silent p.Q879Q 0.17 TCGA-60-2698-01 17 42289010 42289010 C T UBTF Silent p.Q337Q 0.13 TCGA-60-2698-01 17 43003656 43003656 T C KIF18B Intron 0.25 TCGA-60-2698-01 17 43138687 43138687 C T NMT1 5'UTR 0.50 TCGA-60-2698-01 17 43483108 43483108 C A ARHGAP27 5'UTR 0.12 TCGA-60-2698-01 17 43531063 43531063 C T PLEKHM1 Missense_Mutation p.E719K 0.17 tolerated(0.22) possibly_damaging(0.856) TCGA-60-2698-01 17 43552830 43552830 C T PLEKHM1 Missense_Mutation p.E187K 0.12 deleterious(0.01) benign(0.179) TCGA-60-2698-01 17 43552914 43552914 C A PLEKHM1 Nonsense_Mutation p.E159* 0.11 TCGA-60-2698-01 17 4445961 4445961 T A MYBBP1A Missense_Mutation p.N990Y 0.43 deleterious(0) possibly_damaging(0.747) TCGA-60-2698-01 17 45412602 45412602 C G EFCAB13 Missense_Mutation p.S24C 0.13 deleterious(0.03) benign(0.346) TCGA-60-2698-01 17 45925390 45925390 G C SP6 Missense_Mutation p.Q136E 0.22 tolerated(0.64) benign(0.264) TCGA-60-2698-01 17 46247982 46247982 C G SKAP1 Missense_Mutation p.R289P 0.33 tolerated(0.29) benign(0.002) TCGA-60-2698-01 17 48696040 48696040 G C CACNA1G Missense_Mutation p.E1818Q 0.14 tolerated(0.05) probably_damaging(0.978) TCGA-60-2698-01 17 48916857 48916857 C T WFIKKN2 Intron 0.16 TCGA-60-2698-01 17 49197929 49197929 G C SPAG9 Missense_Mutation p.S30C 0.30 deleterious(0) probably_damaging(0.999) TCGA-60-2698-01 17 49710972 49710972 G C CA10 Missense_Mutation p.Q277E 0.31 deleterious(0.02) benign(0.109) TCGA-60-2698-01 17 5087060 5087060 A G ZNF594 Silent p.S164S 0.12 TCGA-60-2698-01 17 53481172 53481172 G A MMD Silent p.L134L 0.12 TCGA-60-2698-01 17 56620706 56620706 G C C17orf47 Missense_Mutation p.S281C 0.04 deleterious(0.01) possibly_damaging(0.476) TCGA-60-2698-01 17 59761290 59761290 C T BRIP1 Silent p.E1039E 0.12 TCGA-60-2698-01 17 618005 618005 C A VPS53 5'UTR 0.55 TCGA-60-2698-01 17 61842099 61842099 C G CCDC47 Splice_Site p.X124_splice 0.14 TCGA-60-2698-01 17 61950643 61950643 C A CSH2 Nonsense_Mutation p.E23* 0.12 TCGA-60-2698-01 17 695453 695453 G A RNMTL1 3'UTR 0.30 TCGA-60-2698-01 17 71346925 71346925 C G SDK2 Missense_Mutation p.Q1921H 0.11 deleterious(0.03) probably_damaging(0.998) TCGA-60-2698-01 17 72740483 72740484 - AT RAB37 Frame_Shift_Ins p.V141Tfs*3 0.11 TCGA-60-2698-01 17 73106666 73106666 C G ARMC7 Missense_Mutation p.S67W 0.12 deleterious(0) possibly_damaging(0.899) TCGA-60-2698-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.41 TCGA-60-2698-01 17 78073442 78073442 C G CCDC40 Silent p.R1099R 0.10 TCGA-60-2698-01 17 78360162 78360162 C T RNF213 Silent p.V4884V 0.05 TCGA-60-2698-01 17 79516348 79516348 C G C17orf70 Silent p.L429L 0.08 TCGA-60-2698-01 17 80054246 80054246 G A FASN Missense_Mutation p.L26F 0.13 deleterious(0) probably_damaging(1) TCGA-60-2698-01 17 8077630 8077630 T A TMEM107 Intron 0.42 TCGA-60-2698-01 18 13438368 13438368 C T LDLRAD4 Missense_Mutation p.P56S 0.11 tolerated(0.22) benign(0.335) TCGA-60-2698-01 18 13438379 13438379 C T LDLRAD4 Silent p.F59F 0.14 TCGA-60-2698-01 18 14478615 14478615 C G CXADRP3 RNA 0.06 TCGA-60-2698-01 18 14542967 14542967 T A POTEC Missense_Mutation p.K60M 0.07 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-60-2698-01 18 19780796 19780796 G T GATA6 3'UTR 0.32 TCGA-60-2698-01 18 2705786 2705786 G A SMCHD1 Missense_Mutation p.G646E 0.08 deleterious(0) probably_damaging(1) TCGA-60-2698-01 18 2750347 2750347 G T SMCHD1 Splice_Site p.X1336_splice 0.07 TCGA-60-2698-01 18 2750348 2750348 G T SMCHD1 Missense_Mutation p.R1336S 0.07 deleterious(0.04) possibly_damaging(0.507) TCGA-60-2698-01 18 2891883 2891883 C G EMILIN2 Silent p.L586L 0.07 TCGA-60-2698-01 18 2945731 2945731 C A LPIN2 Intron 0.05 TCGA-60-2698-01 18 2960699 2960699 G T LPIN2 Missense_Mutation p.P47H 0.05 deleterious(0) probably_damaging(1) TCGA-60-2698-01 18 3086147 3086147 C A MYOM1 Silent p.V1380V 0.05 TCGA-60-2698-01 18 31323250 31323250 T C ASXL3 Silent p.S1146S 0.17 TCGA-60-2698-01 18 31326614 31326614 C T ASXL3 3'UTR 0.23 TCGA-60-2698-01 18 3134771 3134771 G A MYOM1 Missense_Mutation p.S754L 0.05 deleterious(0.04) probably_damaging(1) TCGA-60-2698-01 18 333090 333090 C G COLEC12 Missense_Mutation p.E624Q 0.07 tolerated(0.32) unknown(0) TCGA-60-2698-01 18 335072 335072 G T COLEC12 Missense_Mutation p.R496S 0.06 tolerated(0.07) unknown(0) TCGA-60-2698-01 18 335092 335092 G A COLEC12 Missense_Mutation p.P489L 0.07 tolerated(0.15) unknown(0) TCGA-60-2698-01 18 3502631 3502631 G A DLGAP1 Missense_Mutation p.H862Y 0.09 tolerated(0.29) probably_damaging(0.998) TCGA-60-2698-01 18 35145640 35145640 C G CELF4 5'UTR 0.27 TCGA-60-2698-01 18 3879723 3879723 C T DLGAP1 Missense_Mutation p.D116N 0.09 deleterious(0) possibly_damaging(0.856) TCGA-60-2698-01 18 3879819 3879819 C T DLGAP1 Missense_Mutation p.E84K 0.04 deleterious(0.02) possibly_damaging(0.562) TCGA-60-2698-01 18 3879831 3879831 C G DLGAP1 Missense_Mutation p.E80Q 0.04 tolerated(0.13) possibly_damaging(0.791) TCGA-60-2698-01 18 3879957 3879957 C T DLGAP1 Missense_Mutation p.E38K 0.06 deleterious(0.01) benign(0.146) TCGA-60-2698-01 18 48473422 48473422 C G ME2 Missense_Mutation p.F541L 0.07 tolerated(0.09) benign(0.244) TCGA-60-2698-01 18 52899786 52899786 C G TCF4 Missense_Mutation p.D637H 0.05 deleterious(0) possibly_damaging(0.615) TCGA-60-2698-01 18 5395691 5395691 C T EPB41L3 Missense_Mutation p.D997N 0.12 deleterious(0.02) probably_damaging(0.997) TCGA-60-2698-01 18 627255 627255 C G CLUL1 Silent p.L194L 0.07 TCGA-60-2698-01 18 64197089 64197089 G T CDH19 Missense_Mutation p.S484Y 0.22 tolerated(0.11) benign(0.01) TCGA-60-2698-01 18 6859846 6859846 G T ARHGAP28 Missense_Mutation p.A67S 0.13 tolerated(0.42) benign(0.015) TCGA-60-2698-01 18 6977865 6977865 C G LAMA1 Missense_Mutation p.R2069T 0.13 tolerated(0.48) benign(0.068) TCGA-60-2698-01 18 7037697 7037697 G C LAMA1 Missense_Mutation p.I539M 0.14 tolerated(0.11) benign(0.043) TCGA-60-2698-01 18 71796839 71796839 A G FBXO15 Silent p.L196L 0.28 TCGA-60-2698-01 18 74635112 74635112 C G ZNF236 Missense_Mutation p.H1213D 0.18 deleterious(0) probably_damaging(0.925) TCGA-60-2698-01 18 74639006 74639006 G C ZNF236 Silent p.L1345L 0.15 TCGA-60-2698-01 18 77895042 77895042 G A ADNP2 Silent p.V582V 0.19 TCGA-60-2698-01 18 9258259 9258259 A C ANKRD12 Missense_Mutation p.N1665T 0.12 tolerated_low_confidence(0.05) benign(0.003) TCGA-60-2698-01 18 9263833 9263833 C T ANKRD12 Nonsense_Mutation p.R1904* 0.12 TCGA-60-2698-01 19 10432272 10432272 G C RAVER1 Nonsense_Mutation p.S416* 0.13 TCGA-60-2698-01 19 10439679 10439679 G T RAVER1 Missense_Mutation p.A149D 0.20 deleterious(0) probably_damaging(0.999) TCGA-60-2698-01 19 10794682 10794682 C T ILF3 Intron 0.07 TCGA-60-2698-01 19 10912999 10912999 C G DNM2 Missense_Mutation p.I486M 0.07 tolerated(0.51) benign(0.129) TCGA-60-2698-01 19 10913020 10913020 C T DNM2 Silent p.F493F 0.08 TCGA-60-2698-01 19 1109754 1109756 CTC - SBNO2 In_Frame_Del p.E1017del 0.67 TCGA-60-2698-01 19 11338084 11338084 C A DOCK6 Nonsense_Mutation p.G962* 0.44 TCGA-60-2698-01 19 11943147 11943147 C G ZNF440 Missense_Mutation p.H386D 0.06 deleterious(0) probably_damaging(0.98) TCGA-60-2698-01 19 12491355 12491355 C T CTD-3105H18.14 3'UTR 0.04 TCGA-60-2698-01 19 12502916 12502916 C G ZNF799 Missense_Mutation p.G99A 0.40 tolerated(0.16) benign(0.265) TCGA-60-2698-01 19 13216201 13216201 C A TRMT1 Silent p.A571A 0.05 TCGA-60-2698-01 19 1360266 1360266 G C MUM1 Missense_Mutation p.D117H 0.38 tolerated(0.24) benign(0.086) TCGA-60-2698-01 19 1360504 1360504 G C MUM1 Missense_Mutation p.G196A 0.45 tolerated(0.31) benign(0.14) TCGA-60-2698-01 19 15053102 15053102 A G OR7C2 Missense_Mutation p.R268G 0.39 deleterious_low_confidence(0.02) possibly_damaging(0.579) TCGA-60-2698-01 19 15224645 15224645 G A SYDE1 Silent p.P693P 0.08 TCGA-60-2698-01 19 15298024 15298024 G C NOTCH3 Missense_Mutation p.R578G 0.34 tolerated(0.36) probably_damaging(0.999) TCGA-60-2698-01 19 16918790 16918790 C A NWD1 Missense_Mutation p.A1377E 0.11 tolerated(0.27) benign(0.06) TCGA-60-2698-01 19 17516377 17516377 G C BST2 Missense_Mutation p.S3C 0.06 deleterious(0) possibly_damaging(0.719) TCGA-60-2698-01 19 17735674 17735674 C G UNC13A Missense_Mutation p.E1387D 0.13 deleterious(0) probably_damaging(0.996) TCGA-60-2698-01 19 17986877 17986877 C G SLC5A5 Silent p.L220L 0.43 TCGA-60-2698-01 19 17992823 17992823 C G SLC5A5 Missense_Mutation p.I371M 0.07 deleterious(0.02) possibly_damaging(0.588) TCGA-60-2698-01 19 18561345 18561345 C G ELL Missense_Mutation p.Q469H 0.05 tolerated(0.14) benign(0.17) TCGA-60-2698-01 19 19141784 19141784 C T SUGP2 Missense_Mutation p.E33K 0.05 deleterious(0.02) benign(0.049) TCGA-60-2698-01 19 19312455 19312455 C T RFXANK Intron 0.46 TCGA-60-2698-01 19 19636994 19636994 A G NDUFA13 Missense_Mutation p.Y33C 0.46 deleterious(0.01) probably_damaging(0.992) TCGA-60-2698-01 19 19654817 19654817 T A CILP2 Missense_Mutation p.L488Q 0.41 deleterious(0) probably_damaging(0.999) TCGA-60-2698-01 19 20002737 20002737 C G ZNF253 Silent p.P227P 0.08 TCGA-60-2698-01 19 2078284 2078284 C T MOB3A Silent p.S92S 0.12 TCGA-60-2698-01 19 21608644 21608644 G C ZNF493 3'UTR 0.44 TCGA-60-2698-01 19 23405622 23405622 C T ZNF724P Silent p.E475E 0.05 TCGA-60-2698-01 19 23544021 23544021 G C ZNF91 Nonsense_Mutation p.S587* 0.05 TCGA-60-2698-01 19 23544679 23544679 G C ZNF91 Missense_Mutation p.H368D 0.35 deleterious(0) possibly_damaging(0.749) TCGA-60-2698-01 19 24289358 24289358 G C ZNF254 Missense_Mutation p.V56L 0.32 tolerated(0.09) benign(0.021) TCGA-60-2698-01 19 33695573 33695573 A T LRP3 Missense_Mutation p.H97L 0.49 tolerated(0.31) possibly_damaging(0.828) TCGA-60-2698-01 19 3381931 3381931 C G NFIC Missense_Mutation p.I84M 0.04 deleterious(0) probably_damaging(0.999) TCGA-60-2698-01 19 36342189 36342189 A G NPHS1 Silent p.S124S 0.06 TCGA-60-2698-01 19 37369115 37369115 G A ZNF345 Silent p.K461K 0.19 TCGA-60-2698-01 19 37879981 37879981 C G ZNF527 Missense_Mutation p.H344D 0.03 tolerated(0.07) benign(0.041) TCGA-60-2698-01 19 38160578 38160578 G C ZNF781 Missense_Mutation p.Q158E 0.16 tolerated(0.62) benign(0.027) TCGA-60-2698-01 19 38188851 38188851 C A ZNF607 3'UTR 0.04 TCGA-60-2698-01 19 38896018 38896018 C G FAM98C Missense_Mutation p.S197C 0.19 tolerated(0.15) probably_damaging(0.963) TCGA-60-2698-01 19 38980838 38980838 C T RYR1 Silent p.L1979L 0.22 TCGA-60-2698-01 19 39055641 39055641 G A RYR1 Missense_Mutation p.E4223K 0.33 benign(0.001) TCGA-60-2698-01 19 39086131 39086131 C T MAP4K1 Silent p.S778S 0.06 TCGA-60-2698-01 19 39521733 39521733 C T FBXO27 Missense_Mutation p.E170K 0.49 tolerated(0.31) benign(0.109) TCGA-60-2698-01 19 39914967 39914967 A T PLEKHG2 Missense_Mutation p.Q1065L 0.14 deleterious_low_confidence(0.03) benign(0.003) TCGA-60-2698-01 19 40316475 40316475 T A DYRK1B Silent p.S590S 0.23 TCGA-60-2698-01 19 41120352 41120352 G A LTBP4 Missense_Mutation p.D1005N 0.15 deleterious(0) probably_damaging(0.999) TCGA-60-2698-01 19 42891373 42891373 C A CNFN Missense_Mutation p.A91S 0.18 tolerated(0.06) benign(0.179) TCGA-60-2698-01 19 43013232 43013232 C A CEACAM1 3'UTR 0.12 TCGA-60-2698-01 19 43098952 43098952 C A CEACAM8 Missense_Mutation p.R10I 0.11 deleterious(0.02) possibly_damaging(0.547) TCGA-60-2698-01 19 43372279 43372279 G T PSG1 Missense_Mutation p.S406Y 0.17 deleterious(0.01) possibly_damaging(0.583) TCGA-60-2698-01 19 43674284 43674284 G A PSG5 Missense_Mutation p.S324L 0.16 tolerated(0.25) benign(0.005) TCGA-60-2698-01 19 44471455 44471455 G A ZNF221 Missense_Mutation p.E601K 0.23 tolerated_low_confidence(0.06) benign(0.009) TCGA-60-2698-01 19 44514653 44514653 C G ZNF230 Missense_Mutation p.I154M 0.12 tolerated(0.22) possibly_damaging(0.463) TCGA-60-2698-01 19 44680253 44680253 C T ZNF226 Missense_Mutation p.L280F 0.10 tolerated(0.63) benign(0.004) TCGA-60-2698-01 19 44738912 44738912 C G ZNF227 Nonsense_Mutation p.S110* 0.23 TCGA-60-2698-01 19 44891432 44891432 G C ZNF285 Missense_Mutation p.F325L 0.12 tolerated(0.18) benign(0.083) TCGA-60-2698-01 19 45024764 45024764 G A CEACAM20 RNA 0.39 TCGA-60-2698-01 19 45655151 45655151 C T NKPD1 3'UTR 0.11 TCGA-60-2698-01 19 45856557 45856557 G C ERCC2 Silent p.L567L 0.08 TCGA-60-2698-01 19 47423195 47423195 G A ARHGAP35 Silent p.E421E 0.30 TCGA-60-2698-01 19 48801295 48801295 A G CCDC114 Silent p.L451L 0.16 TCGA-60-2698-01 19 49131269 49131269 G C SPHK2 Silent p.L233L 0.06 TCGA-60-2698-01 19 50796543 50796543 G C MYH14 Missense_Mutation p.E1770D 0.19 tolerated(0.15) probably_damaging(0.999) TCGA-60-2698-01 19 50979667 50979667 G T FAM71E1 5'UTR 0.13 TCGA-60-2698-01 19 51301373 51301373 C T C19orf48 Silent p.L111L 0.20 TCGA-60-2698-01 19 52376400 52376400 C T ZNF577 Silent p.Q281Q 0.17 TCGA-60-2698-01 19 5244280 5244280 C G PTPRS Missense_Mutation p.W401S 0.09 tolerated(0.19) possibly_damaging(0.864) TCGA-60-2698-01 19 53740116 53740116 T C ZNF677 3'UTR 0.16 TCGA-60-2698-01 19 53911436 53911436 A G ZNF765 Missense_Mutation p.M210V 0.05 tolerated(0.49) benign(0.006) TCGA-60-2698-01 19 53911925 53911925 C A ZNF765 Missense_Mutation p.H373N 0.20 deleterious(0) probably_damaging(0.993) TCGA-60-2698-01 19 54255684 54255684 C T MIR519A1 RNA 0.17 TCGA-60-2698-01 19 55399578 55399578 G A FCAR Missense_Mutation p.G189E 0.19 deleterious(0.02) probably_damaging(1) TCGA-60-2698-01 19 55424101 55424101 G A NCR1 Missense_Mutation p.M259I 0.10 tolerated(1) benign(0) TCGA-60-2698-01 19 55434984 55434984 G C NLRP7 3'UTR 0.29 TCGA-60-2698-01 19 55447743 55447743 C A NLRP7 Missense_Mutation p.G729V 0.20 tolerated(0.06) probably_damaging(0.972) TCGA-60-2698-01 19 55670794 55670794 T A DNAAF3 Missense_Mutation p.E488V 0.19 deleterious(0.01) probably_damaging(0.956) TCGA-60-2698-01 19 56047654 56047654 C G SBK2 Missense_Mutation p.G3A 0.19 deleterious_low_confidence(0) unknown(0) TCGA-60-2698-01 19 56160383 56160383 C A CCDC106 5'UTR 0.20 TCGA-60-2698-01 19 56206529 56206529 G T EPN1 Missense_Mutation p.G599V 0.10 tolerated(0.13) benign(0.445) TCGA-60-2698-01 19 56423149 56423149 T C NLRP13 Silent p.L678L 0.22 TCGA-60-2698-01 19 57089033 57089033 T A ZNF470 Silent p.L412L 0.19 TCGA-60-2698-01 19 57089034 57089034 A T ZNF470 Missense_Mutation p.I413F 0.20 deleterious(0.03) possibly_damaging(0.761) TCGA-60-2698-01 19 57909923 57909923 G C ZNF548 Missense_Mutation p.G102R 0.08 tolerated(0.11) benign(0.007) TCGA-60-2698-01 19 58187739 58187739 G A ZSCAN4 Missense_Mutation p.E76K 0.05 deleterious(0.03) probably_damaging(0.987) TCGA-60-2698-01 19 58579503 58579503 G T ZNF135 Nonsense_Mutation p.E575* 0.19 TCGA-60-2698-01 19 58718552 58718552 G C ZNF274 Missense_Mutation p.W240C 0.17 tolerated(0.1) possibly_damaging(0.634) TCGA-60-2698-01 19 6825109 6825109 G C VAV1 Missense_Mutation p.E234Q 0.25 tolerated(0.08) probably_damaging(0.939) TCGA-60-2698-01 19 6896534 6896534 C T EMR1 Missense_Mutation p.P74S 0.49 tolerated(0.1) benign(0.074) TCGA-60-2698-01 19 8150300 8150300 G A FBN3 Missense_Mutation p.S2345F 0.31 deleterious(0.03) possibly_damaging(0.601) TCGA-60-2698-01 19 8381519 8381519 G T NDUFA7 Missense_Mutation p.P38T 0.07 deleterious(0) probably_damaging(0.943) TCGA-60-2698-01 19 8670048 8670048 G T ADAMTS10 Missense_Mutation p.S95Y 0.43 tolerated(0.33) possibly_damaging(0.634) TCGA-60-2698-01 19 875362 875362 G C MED16 Silent p.L551L 0.35 TCGA-60-2698-01 19 9204718 9204718 C T OR1M1 Silent p.L266L 0.08 TCGA-60-2698-01 1 100379264 100379264 C T AGL Silent p.L1377L 0.21 TCGA-60-2698-01 1 101487267 101487267 C G DPH5 Missense_Mutation p.E64Q 0.18 tolerated(0.5) benign(0.008) TCGA-60-2698-01 1 101704702 101704702 C T S1PR1 Silent p.L54L 0.20 TCGA-60-2698-01 1 102290775 102290775 G T OLFM3 Silent p.L133L 0.15 TCGA-60-2698-01 1 103427758 103427758 C T COL11A1 Missense_Mutation p.G1030R 0.17 unknown(0) TCGA-60-2698-01 1 103483430 103483430 C A COL11A1 Missense_Mutation p.M453I 0.16 possibly_damaging(0.896) TCGA-60-2698-01 1 110085670 110085670 C T GPR61 Missense_Mutation p.S9L 0.18 tolerated(0.32) benign(0.307) TCGA-60-2698-01 1 11082826 11082826 C T TARDBP 3'UTR 0.27 TCGA-60-2698-01 1 111861204 111861204 G C CHIA Silent p.L273L 0.18 TCGA-60-2698-01 1 114308953 114308953 G C RSBN1 Missense_Mutation p.F686L 0.19 deleterious(0) probably_damaging(0.979) TCGA-60-2698-01 1 118609430 118609430 C T SPAG17 Missense_Mutation p.M826I 0.17 deleterious(0) possibly_damaging(0.648) TCGA-60-2698-01 1 12954931 12954931 C G PRAMEF10 Missense_Mutation p.G118R 0.15 deleterious(0) probably_damaging(0.955) TCGA-60-2698-01 1 14107885 14107885 G C PRDM2 Missense_Mutation p.E1199Q 0.06 unknown(0) TCGA-60-2698-01 1 142713156 142713156 C A RP11-417J8.6 RNA 0.23 TCGA-60-2698-01 1 144915496 144915496 C G PDE4DIP Missense_Mutation p.M643I 0.08 tolerated(0.48) benign(0.001) TCGA-60-2698-01 1 145104002 145104002 G A SEC22B RNA 0.13 TCGA-60-2698-01 1 145536083 145536083 G C ITGA10 Silent p.R725R 0.20 TCGA-60-2698-01 1 145650499 145650499 G A RNF115 Missense_Mutation p.G60S 0.15 tolerated(0.83) benign(0.007) TCGA-60-2698-01 1 149858795 149858795 G C HIST2H2AC Missense_Mutation p.D91H 0.14 deleterious_low_confidence(0) probably_damaging(1) TCGA-60-2698-01 1 150529462 150529462 C T ADAMTSL4 Silent p.I599I 0.04 TCGA-60-2698-01 1 150549777 150549777 G C MCL1 3'UTR 0.13 TCGA-60-2698-01 1 150727603 150727603 C G CTSS Missense_Mutation p.L91F 0.04 tolerated(0.46) benign(0.152) TCGA-60-2698-01 1 151374403 151374403 C G PSMB4 3'UTR 0.12 TCGA-60-2698-01 1 151501993 151501993 G C CGN Missense_Mutation p.K688N 0.11 deleterious(0.01) probably_damaging(0.933) TCGA-60-2698-01 1 152285429 152285429 G C FLG Missense_Mutation p.H645D 0.36 possibly_damaging(0.904) TCGA-60-2698-01 1 152383036 152383036 C G CRNN Missense_Mutation p.Q174H 0.20 deleterious(0.02) benign(0.357) TCGA-60-2698-01 1 153634796 153634796 C T ILF2 3'UTR 0.14 TCGA-60-2698-01 1 153652175 153652175 C T NPR1 Silent p.F197F 0.31 TCGA-60-2698-01 1 153736693 153736693 G A INTS3 Missense_Mutation p.E641K 0.36 deleterious(0.01) probably_damaging(0.99) TCGA-60-2698-01 1 153955596 153955596 C T RAB13 Intron 0.16 TCGA-60-2698-01 1 154227363 154227363 G C UBAP2L Missense_Mutation p.E636Q 0.10 tolerated(0.32) unknown(0) TCGA-60-2698-01 1 155292628 155292628 C A RUSC1 Nonsense_Mutation p.S355* 0.24 TCGA-60-2698-01 1 155449335 155449335 G T ASH1L Missense_Mutation p.S1109Y 0.12 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-60-2698-01 1 156626090 156626090 C T BCAN Silent p.S653S 0.12 TCGA-60-2698-01 1 156641855 156641855 C G NES Missense_Mutation p.E709Q 0.04 tolerated(0.09) possibly_damaging(0.859) TCGA-60-2698-01 1 156642404 156642404 C G NES Missense_Mutation p.E526Q 0.04 deleterious(0.04) benign(0.1) TCGA-60-2698-01 1 156694046 156694046 C T ISG20L2 Missense_Mutation p.R281H 0.04 deleterious(0) probably_damaging(0.909) TCGA-60-2698-01 1 156779563 156779563 C G SH2D2A Missense_Mutation p.E212Q 0.27 tolerated(0.31) possibly_damaging(0.499) TCGA-60-2698-01 1 157648534 157648534 T A FCRL3 Missense_Mutation p.N724I 0.11 deleterious(0) probably_damaging(0.999) TCGA-60-2698-01 1 158064513 158064513 G A KIRREL Missense_Mutation p.R626H 0.07 deleterious(0.01) possibly_damaging(0.847) TCGA-60-2698-01 1 158227577 158227577 C A CD1A 3'UTR 0.09 TCGA-60-2698-01 1 158549092 158549092 C G OR10X1 Missense_Mutation p.V200L 0.05 tolerated(0.27) possibly_damaging(0.702) TCGA-60-2698-01 1 158655095 158655095 C G SPTA1 Missense_Mutation p.E23Q 0.16 tolerated(0.11) benign(0.034) TCGA-60-2698-01 1 158669950 158669950 G T OR6K2 Missense_Mutation p.L165M 0.35 tolerated(0.13) probably_damaging(0.957) TCGA-60-2698-01 1 158735813 158735813 C A OR6N1 Missense_Mutation p.Q220H 0.04 tolerated(0.27) benign(0.009) TCGA-60-2698-01 1 160064893 160064893 C T IGSF8 Missense_Mutation p.E70K 0.10 tolerated(0.15) probably_damaging(0.997) TCGA-60-2698-01 1 160262323 160262323 G C COPA Missense_Mutation p.Q980E 0.10 tolerated(0.27) benign(0.003) TCGA-60-2698-01 1 160281683 160281683 C A COPA Missense_Mutation p.D351Y 0.07 deleterious(0) benign(0.373) TCGA-60-2698-01 1 16060319 16060319 G A PLEKHM2 Missense_Mutation p.E984K 0.15 deleterious(0.01) benign(0.437) TCGA-60-2698-01 1 161833057 161833057 C T ATF6 Silent p.A558A 0.12 TCGA-60-2698-01 1 161967758 161967758 A G OLFML2B Missense_Mutation p.M444T 0.10 tolerated(0.47) benign(0) TCGA-60-2698-01 1 16558793 16558793 C G RSG1 Splice_Site p.X176_splice 0.27 TCGA-60-2698-01 1 167086653 167086653 C T DUSP27 Silent p.N98N 0.61 TCGA-60-2698-01 1 167086707 167086707 G C DUSP27 Silent p.L116L 0.44 TCGA-60-2698-01 1 169204413 169204413 C G NME7 Missense_Mutation p.E282Q 0.07 deleterious(0.02) benign(0.363) TCGA-60-2698-01 1 169267888 169267888 C T NME7 Missense_Mutation p.R185H 0.56 deleterious(0.01) possibly_damaging(0.87) TCGA-60-2698-01 1 169576241 169576241 C T SELP Missense_Mutation p.V489M 0.47 tolerated(0.15) benign(0.026) TCGA-60-2698-01 1 169672451 169672451 C G SELL Missense_Mutation p.K312N 0.56 tolerated(0.2) benign(0.013) TCGA-60-2698-01 1 171504701 171504701 C T PRRC2C Nonsense_Mutation p.Q668* 0.04 TCGA-60-2698-01 1 173814391 173814391 G A DARS2 Missense_Mutation p.E385K 0.38 tolerated(0.07) benign(0.012) TCGA-60-2698-01 1 176659276 176659276 G T PAPPA2 Missense_Mutation p.G714V 0.10 deleterious(0) probably_damaging(1) TCGA-60-2698-01 1 176915110 176915110 T C ASTN1 Missense_Mutation p.N734S 0.03 deleterious(0.02) benign(0.154) TCGA-60-2698-01 1 179380370 179380370 G C AXDND1 Missense_Mutation p.W400S 0.22 deleterious(0) possibly_damaging(0.804) TCGA-60-2698-01 1 18152793 18152793 C G ACTL8 Missense_Mutation p.H294D 0.17 deleterious(0.02) probably_damaging(0.967) TCGA-60-2698-01 1 183105618 183105618 G C LAMC1 Missense_Mutation p.K1404N 0.27 deleterious(0) possibly_damaging(0.511) TCGA-60-2698-01 1 184690474 184690474 C A EDEM3 Missense_Mutation p.L300F 0.25 tolerated(0.12) possibly_damaging(0.654) TCGA-60-2698-01 1 186143736 186143736 G C HMCN1 Missense_Mutation p.R5302T 0.32 probably_damaging(0.952) TCGA-60-2698-01 1 19204081 19204081 G A ALDH4A1 Silent p.F322F 0.12 TCGA-60-2698-01 1 192628584 192628584 C - RGS13 Frame_Shift_Del p.R139Dfs*3 0.24 TCGA-60-2698-01 1 193150056 193150056 G C B3GALT2 Missense_Mutation p.H213D 0.25 deleterious(0.01) probably_damaging(0.985) TCGA-60-2698-01 1 1961513 1961513 C T GABRD Missense_Mutation p.P384L 0.31 tolerated(0.1) benign(0.129) TCGA-60-2698-01 1 196876443 196876443 C T CFHR4 Intron 0.24 TCGA-60-2698-01 1 196879495 196879495 C A CFHR4 Missense_Mutation p.T294K 0.21 tolerated(0.18) benign(0.002) TCGA-60-2698-01 1 196963300 196963300 C A CFHR5 Missense_Mutation p.S174Y 0.25 deleterious(0) possibly_damaging(0.884) TCGA-60-2698-01 1 197150130 197150130 G A ZBTB41 Missense_Mutation p.S555L 0.20 deleterious(0) probably_damaging(0.997) TCGA-60-2698-01 1 197396927 197396927 C G CRB1 Missense_Mutation p.I824M 0.19 tolerated(0.09) benign(0.367) TCGA-60-2698-01 1 198668795 198668795 C - PTPRC Frame_Shift_Del p.A134Efs*33 0.13 TCGA-60-2698-01 1 19992591 19992591 C G HTR6 Silent p.L115L 0.18 TCGA-60-2698-01 1 202698259 202698259 G A KDM5B Missense_Mutation p.H1514Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-60-2698-01 1 202701006 202701006 G A KDM5B Missense_Mutation p.S1324L 0.29 tolerated(0.25) benign(0.004) TCGA-60-2698-01 1 202702639 202702639 G A KDM5B Nonsense_Mutation p.Q1267* 0.33 TCGA-60-2698-01 1 202702640 202702640 G A KDM5B Silent p.A1266A 0.34 TCGA-60-2698-01 1 202704571 202704571 C G KDM5B Missense_Mutation p.E1137Q 0.28 deleterious(0) benign(0.322) TCGA-60-2698-01 1 202709841 202709841 C G KDM5B Missense_Mutation p.Q1015H 0.34 tolerated(0.06) possibly_damaging(0.811) TCGA-60-2698-01 1 202715077 202715077 C T KDM5B Missense_Mutation p.M744I 0.29 deleterious(0) possibly_damaging(0.826) TCGA-60-2698-01 1 202729662 202729662 C T KDM5B Missense_Mutation p.D320N 0.28 tolerated(0.3) possibly_damaging(0.845) TCGA-60-2698-01 1 204380698 204380698 G A PPP1R15B 5'UTR 0.53 TCGA-60-2698-01 1 206224942 206224942 C T AVPR1B Nonsense_Mutation p.Q168* 0.30 TCGA-60-2698-01 1 21042067 21042067 G A KIF17 Silent p.F99F 0.27 TCGA-60-2698-01 1 211256146 211256146 G T KCNH1 Silent p.V178V 0.35 TCGA-60-2698-01 1 21268017 21268017 G C EIF4G3 Missense_Mutation p.Q494E 0.13 tolerated_low_confidence(0.25) benign(0.007) TCGA-60-2698-01 1 214787149 214787149 C T CENPF Nonsense_Mutation p.Q18* 0.27 TCGA-60-2698-01 1 216420010 216420010 G T USH2A Missense_Mutation p.P909H 0.28 probably_damaging(0.95) TCGA-60-2698-01 1 218614660 218614660 G C TGFB2 Missense_Mutation p.E429Q 0.24 deleterious(0.04) probably_damaging(0.998) TCGA-60-2698-01 1 21935429 21935429 C A RAP1GAP Missense_Mutation p.G422W 0.21 deleterious(0.02) possibly_damaging(0.904) TCGA-60-2698-01 1 220441033 220441033 G A RAB3GAP2 Intron 0.12 TCGA-60-2698-01 1 222801268 222801268 G A MIA3 Missense_Mutation p.D236N 0.28 deleterious(0.01) possibly_damaging(0.711) TCGA-60-2698-01 1 22328167 22328167 C T CELA3A 5'UTR 0.15 TCGA-60-2698-01 1 224415222 224415222 A C NVL 3'UTR 0.28 TCGA-60-2698-01 1 225597990 225597990 T A LBR Intron 0.36 TCGA-60-2698-01 1 228401979 228401979 C A OBSCN Silent p.R455R 0.22 TCGA-60-2698-01 1 228596932 228596932 G T TRIM17 Missense_Mutation p.T275N 0.23 tolerated(0.43) benign(0.085) TCGA-60-2698-01 1 232172460 232172460 G C DISC1 Missense_Mutation p.Q816H 0.29 deleterious(0) probably_damaging(0.971) TCGA-60-2698-01 1 235944340 235944340 G C LYST Nonsense_Mutation p.S1680* 0.26 TCGA-60-2698-01 1 237780608 237780608 T A RYR2 Missense_Mutation p.L1913H 0.19 probably_damaging(0.96) TCGA-60-2698-01 1 240656472 240656472 T G GREM2 Missense_Mutation p.N102H 0.13 deleterious(0.01) possibly_damaging(0.856) TCGA-60-2698-01 1 241767865 241767865 G C OPN3 Silent p.A130A 0.18 TCGA-60-2698-01 1 243328999 243328999 C - CEP170 Frame_Shift_Del p.E755Rfs*62 0.15 TCGA-60-2698-01 1 244538705 244538705 C G C1orf100 Missense_Mutation p.Q30E 0.21 tolerated(0.26) benign(0.086) TCGA-60-2698-01 1 246811395 246811395 A T CNST Intron 0.21 TCGA-60-2698-01 1 247592978 247592978 G T NLRP3 Missense_Mutation p.D750Y 0.07 tolerated(0.79) probably_damaging(0.975) TCGA-60-2698-01 1 247752339 247752339 C T OR2G2 Silent p.H226H 0.29 TCGA-60-2698-01 1 247875190 247875190 A T OR6F1 Missense_Mutation p.Y290N 0.29 deleterious(0) probably_damaging(0.999) TCGA-60-2698-01 1 248685476 248685476 A T OR2G6 Missense_Mutation p.I177F 0.28 tolerated(1) benign(0.004) TCGA-60-2698-01 1 248722743 248722743 A C OR2T29 Missense_Mutation p.I17S 0.12 deleterious(0) benign(0.15) TCGA-60-2698-01 1 248737468 248737468 G C OR2T34 Silent p.V197V 0.19 TCGA-60-2698-01 1 248814024 248814024 G A OR2T27 Silent p.R54R 0.16 TCGA-60-2698-01 1 27189850 27189850 G C SFN Missense_Mutation p.K49N 0.05 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-60-2698-01 1 28818243 28818243 C G PHACTR4 Missense_Mutation p.Q664E 0.25 tolerated(0.19) benign(0.076) TCGA-60-2698-01 1 28906459 28906459 C T TRNAU1AP 3'Flank 0.25 TCGA-60-2698-01 1 33987111 33987111 C T CSMD2 Missense_Mutation p.G3373S 0.23 deleterious(0.01) possibly_damaging(0.904) TCGA-60-2698-01 1 35836084 35836084 A G ZMYM4 Missense_Mutation p.K346R 0.26 deleterious(0.04) possibly_damaging(0.456) TCGA-60-2698-01 1 36754981 36754981 C T THRAP3 Missense_Mutation p.S454F 0.17 deleterious(0) probably_damaging(0.989) TCGA-60-2698-01 1 38019867 38019867 T C SNIP1 5'UTR 0.20 TCGA-60-2698-01 1 38355326 38355326 G A INPP5B Missense_Mutation p.H234Y 0.19 tolerated(0.54) possibly_damaging(0.602) TCGA-60-2698-01 1 42047743 42047743 C T HIVEP3 Missense_Mutation p.R909H 0.20 probably_damaging(0.998) TCGA-60-2698-01 1 42880512 42880512 C G RIMKLA Missense_Mutation p.S348C 0.27 tolerated_low_confidence(0.06) benign(0.167) TCGA-60-2698-01 1 43395312 43395312 G C SLC2A1 Silent p.L273L 0.21 TCGA-60-2698-01 1 43909283 43909283 G A SZT2 Missense_Mutation p.E2824K 0.23 tolerated(0.45) possibly_damaging(0.895) TCGA-60-2698-01 1 44084309 44084309 T G PTPRF Missense_Mutation p.C1460W 0.20 deleterious(0) probably_damaging(1) TCGA-60-2698-01 1 44437296 44437296 G T DPH2 Missense_Mutation p.W241L 0.17 deleterious(0.05) benign(0.27) TCGA-60-2698-01 1 44457911 44457911 G C CCDC24 Missense_Mutation p.E52Q 0.20 deleterious(0) possibly_damaging(0.565) TCGA-60-2698-01 1 45120367 45120367 T A TMEM53 Missense_Mutation p.E233V 0.19 tolerated(0.08) benign(0.183) TCGA-60-2698-01 1 45268466 45268466 G A PLK3 Missense_Mutation p.E230K 0.16 deleterious(0) probably_damaging(0.968) TCGA-60-2698-01 1 47173646 47173646 C G EFCAB14 Missense_Mutation p.E138Q 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-60-2698-01 1 47904465 47904465 C A FOXD2 Missense_Mutation p.R220S 0.20 deleterious(0) possibly_damaging(0.754) TCGA-60-2698-01 1 48694589 48694589 C A SLC5A9 Missense_Mutation p.A101D 0.15 deleterious(0) probably_damaging(0.996) TCGA-60-2698-01 1 52854178 52854178 G A ORC1 Missense_Mutation p.S440F 0.26 tolerated(0.11) benign(0.022) TCGA-60-2698-01 1 53446098 53446098 A T SCP2 Nonsense_Mutation p.R286* 0.16 TCGA-60-2698-01 1 54681865 54681865 G T MRPL37 Missense_Mutation p.D348Y 0.15 deleterious(0) probably_damaging(0.987) TCGA-60-2698-01 1 55134563 55134563 C T MROH7 Silent p.L448L 0.06 TCGA-60-2698-01 1 55224180 55224180 C A PARS2 Missense_Mutation p.A219S 0.13 deleterious(0.01) probably_damaging(0.989) TCGA-60-2698-01 1 60330868 60330868 G C HOOK1 Missense_Mutation p.Q565H 0.21 deleterious(0.01) probably_damaging(0.937) TCGA-60-2698-01 1 6273210 6273210 C T RNF207 Missense_Mutation p.S540F 0.15 deleterious(0) probably_damaging(0.995) TCGA-60-2698-01 1 63988814 63988814 C T ITGB3BP 5'UTR 0.18 TCGA-60-2698-01 1 65147010 65147010 G C CACHD1 Missense_Mutation p.R1108T 0.19 tolerated(0.28) benign(0.009) TCGA-60-2698-01 1 6634877 6634877 G A TAS1R1 Missense_Mutation p.E229K 0.15 tolerated(0.48) benign(0.098) TCGA-60-2698-01 1 67591441 67591441 G C C1orf141 Nonsense_Mutation p.S76* 0.15 TCGA-60-2698-01 1 70573482 70573482 A G LRRC7 Silent p.L1493L 0.11 TCGA-60-2698-01 1 75037256 75037256 C T C1orf173 Missense_Mutation p.D1380N 0.16 deleterious(0.02) probably_damaging(0.955) TCGA-60-2698-01 1 78098555 78098555 C T ZZZ3 Missense_Mutation p.R162Q 0.16 tolerated_low_confidence(0.08) benign(0.116) TCGA-60-2698-01 1 78425868 78425868 C - FUBP1 Splice_Site p.X526_splice 0.17 TCGA-60-2698-01 1 79386062 79386062 C G ELTD1 Missense_Mutation p.D423H 0.23 tolerated(0.64) benign(0.008) TCGA-60-2698-01 1 85499857 85499857 G C MCOLN3 Missense_Mutation p.I158M 0.20 tolerated(0.08) benign(0.01) TCGA-60-2698-01 1 85634814 85634814 C T SYDE2 Silent p.L922L 0.16 TCGA-60-2698-01 1 86591095 86591095 C G COL24A1 Missense_Mutation p.Q308H 0.18 tolerated(0.25) benign(0.172) TCGA-60-2698-01 1 86591140 86591140 G A COL24A1 Silent p.I293I 0.15 TCGA-60-2698-01 1 86591631 86591631 T C COL24A1 Missense_Mutation p.R130G 0.18 deleterious(0) possibly_damaging(0.662) TCGA-60-2698-01 1 9097668 9097668 G T SLC2A5 Missense_Mutation p.P495T 0.06 tolerated(0.23) possibly_damaging(0.908) TCGA-60-2698-01 1 9118277 9118277 C G SLC2A5 Silent p.L22L 0.10 TCGA-60-2698-01 1 94930375 94930375 C T ABCD3 Silent p.F64F 0.15 TCGA-60-2698-01 1 97270493 97270493 G C PTBP2 Missense_Mutation p.E348Q 0.22 tolerated(0.12) possibly_damaging(0.647) TCGA-60-2698-01 20 10286827 10286827 G C SNAP25 Missense_Mutation p.K201N 0.21 tolerated(0.16) benign(0.128) TCGA-60-2698-01 20 1281296 1281296 G C SNPH Missense_Mutation p.E83D 0.05 deleterious(0) probably_damaging(0.999) TCGA-60-2698-01 20 14066369 14066369 A G MACROD2 Missense_Mutation p.N89S 0.19 deleterious(0) probably_damaging(0.983) TCGA-60-2698-01 20 18448104 18448104 G T POLR3F 5'UTR 0.21 TCGA-60-2698-01 20 21687476 21687476 G C PAX1 Silent p.A229A 0.20 TCGA-60-2698-01 20 2290881 2290881 G A TGM3 Missense_Mutation p.S80N 0.30 tolerated(0.35) benign(0.01) TCGA-60-2698-01 20 23361892 23361892 T C NAPB Silent p.K208K 0.16 TCGA-60-2698-01 20 24523908 24523908 C A SYNDIG1 Missense_Mutation p.P59T 0.26 tolerated(0.38) benign(0.05) TCGA-60-2698-01 20 25011724 25011724 G C ACSS1 Intron 0.27 TCGA-60-2698-01 20 30784767 30784767 G C PLAGL2 Missense_Mutation p.L327V 0.03 tolerated(0.18) possibly_damaging(0.899) TCGA-60-2698-01 20 3129718 3129718 C T FASTKD5 5'UTR 0.26 TCGA-60-2698-01 20 3146652 3146652 C A LZTS3 Missense_Mutation p.D272Y 0.10 deleterious(0.02) probably_damaging(0.99) TCGA-60-2698-01 20 31685537 31685537 G A BPIFB4 Missense_Mutation p.E505K 0.08 deleterious(0) possibly_damaging(0.459) TCGA-60-2698-01 20 32677584 32677584 G T EIF2S2 Missense_Mutation p.F318L 0.13 deleterious(0) probably_damaging(0.97) TCGA-60-2698-01 20 33591291 33591291 G C TRPC4AP Silent p.L726L 0.16 TCGA-60-2698-01 20 33595396 33595396 G A TRPC4AP Missense_Mutation p.S548F 0.17 deleterious(0) probably_damaging(0.963) TCGA-60-2698-01 20 34205126 34205126 G C SPAG4 Missense_Mutation p.E125Q 0.18 tolerated(0.1) benign(0.196) TCGA-60-2698-01 20 37383748 37383748 C A ACTR5 Silent p.L308L 0.07 TCGA-60-2698-01 20 40980734 40980734 G T PTPRT Silent p.T584T 0.37 TCGA-60-2698-01 20 43926926 43926926 G A MATN4 Missense_Mutation p.S437F 0.15 probably_damaging(0.986) TCGA-60-2698-01 20 45204214 45204214 C G SLC13A3 Missense_Mutation p.E444Q 0.20 deleterious(0.04) possibly_damaging(0.58) TCGA-60-2698-01 20 47266640 47266640 G C PREX1 Missense_Mutation p.I974M 0.17 deleterious(0) benign(0.398) TCGA-60-2698-01 20 51871975 51871975 G C TSHZ2 Missense_Mutation p.E660Q 0.43 tolerated(0.08) benign(0.009) TCGA-60-2698-01 20 5294721 5294721 C T PROKR2 Missense_Mutation p.D99N 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-60-2698-01 20 60859192 60859192 G - OSBPL2 Frame_Shift_Del p.R322Gfs*6 0.16 TCGA-60-2698-01 20 61870880 61870880 G A BIRC7 Missense_Mutation p.E274K 0.13 deleterious(0) benign(0.219) TCGA-60-2698-01 20 62871199 62871199 G A MYT1 Silent p.L1060L 0.05 TCGA-60-2698-01 20 8678350 8678350 G C PLCB1 Missense_Mutation p.D363H 0.09 deleterious(0) probably_damaging(1) TCGA-60-2698-01 20 8862500 8862500 C T PLCB1 3'UTR 0.23 TCGA-60-2698-01 21 15011902 15011902 G A POTED Silent p.E492E 0.10 TCGA-60-2698-01 21 15599481 15599481 A G RBM11 Missense_Mutation p.D238G 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.686) TCGA-60-2698-01 21 19651328 19651328 G T TMPRSS15 Missense_Mutation p.P906Q 0.08 deleterious(0) possibly_damaging(0.859) TCGA-60-2698-01 21 22849633 22849633 C G NCAM2 Missense_Mutation p.L640V 0.18 tolerated(0.24) benign(0.035) TCGA-60-2698-01 21 22849675 22849675 G T NCAM2 Nonsense_Mutation p.E654* 0.14 TCGA-60-2698-01 21 31023509 31023509 C G GRIK1 Missense_Mutation p.E295Q 0.17 tolerated(0.13) benign(0.069) TCGA-60-2698-01 21 32526612 32526612 G A TIAM1 Missense_Mutation p.R1042C 0.07 deleterious(0) probably_damaging(0.927) TCGA-60-2698-01 21 33642731 33642731 C T MIS18A Missense_Mutation p.E171K 0.16 tolerated(0.25) benign(0.006) TCGA-60-2698-01 21 37610966 37610966 G T DOPEY2 Missense_Mutation p.S948I 0.27 deleterious(0) possibly_damaging(0.453) TCGA-60-2698-01 21 38878617 38878617 C T DYRK1A Intron 0.28 TCGA-60-2698-01 21 39671705 39671705 G C KCNJ15 Silent p.R174R 0.28 TCGA-60-2698-01 21 40559097 40559097 G C BRWD1 Missense_Mutation p.S2273C 0.19 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-60-2698-01 21 41142978 41142978 C G IGSF5 Nonsense_Mutation p.S185* 0.15 TCGA-60-2698-01 21 41385099 41385099 G T DSCAM Silent p.A1967A 0.13 TCGA-60-2698-01 21 44179162 44179162 C T PDE9A Silent p.F288F 0.06 TCGA-60-2698-01 21 44448912 44448912 C G PKNOX1 Missense_Mutation p.Q343E 0.23 deleterious(0.05) benign(0.115) TCGA-60-2698-01 21 44450169 44450169 C G PKNOX1 Missense_Mutation p.H423Q 0.25 deleterious_low_confidence(0.02) benign(0.008) TCGA-60-2698-01 21 44483143 44483143 C T CBS Missense_Mutation p.E292K 0.23 tolerated(0.1) benign(0.007) TCGA-60-2698-01 21 44483170 44483170 C T CBS Missense_Mutation p.E283K 0.22 tolerated(0.3) benign(0.072) TCGA-60-2698-01 21 45811239 45811239 C T TRPM2 Nonsense_Mutation p.Q509* 0.20 TCGA-60-2698-01 21 45999863 45999863 G T KRTAP10-5 Nonsense_Mutation p.S198* 0.20 TCGA-60-2698-01 21 47546006 47546006 C T COL6A2 Silent p.I759I 0.06 TCGA-60-2698-01 21 47864606 47864606 G C PCNT Splice_Site p.X3280_splice 0.11 TCGA-60-2698-01 22 16287321 16287321 C T POTEH Missense_Mutation p.V189I 0.13 deleterious(0.03) probably_damaging(0.998) TCGA-60-2698-01 22 16449122 16449122 A T OR11H1 Missense_Mutation p.F228Y 0.10 tolerated(0.66) benign(0.367) TCGA-60-2698-01 22 17619130 17619130 T A CECR5 Silent p.S351S 0.33 TCGA-60-2698-01 22 19384325 19384325 G C HIRA Silent p.T213T 0.29 TCGA-60-2698-01 22 20103652 20103652 C A TRMT2A Missense_Mutation p.D170Y 0.15 deleterious(0.02) possibly_damaging(0.853) TCGA-60-2698-01 22 21799210 21799210 G A HIC2 Splice_Site p.X9_splice 0.16 TCGA-60-2698-01 22 22724275 22724275 C T IGLV7-46 Silent p.F57F 0.27 TCGA-60-2698-01 22 24236642 24236642 C G AP000350.4 3'UTR 0.11 TCGA-60-2698-01 22 25243621 25243621 C G SGSM1 Missense_Mutation p.L54V 0.14 deleterious(0.03) possibly_damaging(0.808) TCGA-60-2698-01 22 26888319 26888319 G T TFIP11 Missense_Mutation p.P725Q 0.05 deleterious(0) probably_damaging(0.994) TCGA-60-2698-01 22 33402434 33402434 G C SYN3 Missense_Mutation p.Q72E 0.14 tolerated(0.09) unknown(0) TCGA-60-2698-01 22 33712171 33712171 A G LARGE Missense_Mutation p.F451L 0.10 tolerated(1) benign(0.001) TCGA-60-2698-01 22 36055367 36055367 C G APOL6 Silent p.L252L 0.04 TCGA-60-2698-01 22 37462230 37462230 A G TMPRSS6 Missense_Mutation p.F776L 0.29 deleterious(0) probably_damaging(0.999) TCGA-60-2698-01 22 37693655 37693655 C T CYTH4 Silent p.D95D 0.12 TCGA-60-2698-01 22 39138319 39138319 G T SUN2 Missense_Mutation p.A373D 0.12 tolerated(0.62) benign(0.197) TCGA-60-2698-01 22 40367157 40367157 G T GRAP2 3'UTR 0.14 TCGA-60-2698-01 22 40367161 40367161 C G GRAP2 3'UTR 0.33 TCGA-60-2698-01 22 40718922 40718922 C G TNRC6B Missense_Mutation p.L1727V 0.33 deleterious(0.01) possibly_damaging(0.626) TCGA-60-2698-01 22 40803811 40803811 G A SGSM3 Missense_Mutation p.E515K 0.26 deleterious(0) probably_damaging(0.992) TCGA-60-2698-01 22 41278163 41278163 C G XPNPEP3 Missense_Mutation p.L191V 0.34 tolerated(0.45) benign(0.01) TCGA-60-2698-01 22 41751776 41751776 G A ZC3H7B Silent p.R728R 0.31 TCGA-60-2698-01 22 42042909 42042909 G A XRCC6 Silent p.L261L 0.04 TCGA-60-2698-01 22 45595791 45595791 G A KIAA0930 Silent p.N331N 0.17 TCGA-60-2698-01 22 46654413 46654413 C T PKDREJ Missense_Mutation p.G1603S 0.23 tolerated(0.12) possibly_damaging(0.837) TCGA-60-2698-01 22 50356788 50356788 G C PIM3 3'UTR 0.25 TCGA-60-2698-01 2 101967465 101967465 T C CREG2 Missense_Mutation p.I265V 0.27 tolerated(0.67) benign(0.039) TCGA-60-2698-01 2 105859124 105859124 T A GPR45 Missense_Mutation p.L270Q 0.32 deleterious(0) probably_damaging(0.967) TCGA-60-2698-01 2 108921915 108921915 G C SULT1C2 Missense_Mutation p.K225N 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-60-2698-01 2 109397776 109397776 C T RANBP2 Missense_Mutation p.S2884L 0.23 deleterious(0.02) benign(0.255) TCGA-60-2698-01 2 113146570 113146570 C G RGPD8 Missense_Mutation p.D1318H 0.40 tolerated(0.06) probably_damaging(0.999) TCGA-60-2698-01 2 113588118 113588118 C T IL1B Silent p.K210K 0.33 TCGA-60-2698-01 2 120125782 120125782 G T DBI Missense_Mutation p.A71S 0.28 deleterious(0.01) probably_damaging(0.985) TCGA-60-2698-01 2 121981961 121981961 C G TFCP2L1 Missense_Mutation p.E466Q 0.09 tolerated(0.21) benign(0.07) TCGA-60-2698-01 2 131520801 131520801 G T AMER3 Missense_Mutation p.G386C 0.20 deleterious(0) probably_damaging(1) TCGA-60-2698-01 2 136393534 136393534 G C R3HDM1 Missense_Mutation p.R258T 0.03 deleterious(0) probably_damaging(1) TCGA-60-2698-01 2 136528164 136528164 G C UBXN4 Missense_Mutation p.E227D 0.15 tolerated(0.16) benign(0.033) TCGA-60-2698-01 2 141232707 141232707 C A LRP1B Missense_Mutation p.V3209F 0.12 benign(0.403) TCGA-60-2698-01 2 1488566 1488566 G A TPO Missense_Mutation p.D513N 0.05 tolerated(0.38) benign(0.41) TCGA-60-2698-01 2 149799217 149799217 G A KIF5C Missense_Mutation p.E178K 0.29 deleterious(0) possibly_damaging(0.857) TCGA-60-2698-01 2 149806962 149806962 G C KIF5C Silent p.L318L 0.29 TCGA-60-2698-01 2 152132274 152132274 G A NMI Nonsense_Mutation p.Q149* 0.08 TCGA-60-2698-01 2 152427061 152427061 C T NEB Missense_Mutation p.D5690N 0.22 probably_damaging(1) TCGA-60-2698-01 2 159517826 159517826 C T PKP4 Intron 0.06 TCGA-60-2698-01 2 159536982 159536982 G A PKP4 Silent p.K1124K 0.11 TCGA-60-2698-01 2 16086030 16086030 C T MYCN Silent p.L402L 0.06 TCGA-60-2698-01 2 166848121 166848121 C G SCN1A Missense_Mutation p.Q1888H 0.10 deleterious(0.03) probably_damaging(0.972) TCGA-60-2698-01 2 168726011 168726011 C G B3GALT1 Silent p.L154L 0.28 TCGA-60-2698-01 2 173659797 173659797 G T RAPGEF4 Missense_Mutation p.R37L 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-60-2698-01 2 173891404 173891404 A G RAPGEF4 Silent p.E786E 0.23 TCGA-60-2698-01 2 176948324 176948324 C T EVX2 Missense_Mutation p.A61T 0.11 tolerated(0.43) benign(0.002) TCGA-60-2698-01 2 17698620 17698620 T C RAD51AP2 Missense_Mutation p.S355G 0.26 tolerated(0.18) benign(0.067) TCGA-60-2698-01 2 179319253 179319253 C T DFNB59 Nonsense_Mutation p.R136* 0.28 TCGA-60-2698-01 2 179431097 179431097 C G TTN Missense_Mutation p.E26588Q 0.05 TCGA-60-2698-01 2 179546413 179546413 T G TTN Silent p.T11049T 0.35 TCGA-60-2698-01 2 179613783 179613783 C G TTN Intron 0.13 TCGA-60-2698-01 2 186698018 186698018 G C FSIP2 3'Flank 0.16 TCGA-60-2698-01 2 189964841 189964841 C G COL5A2 Missense_Mutation p.V121L 0.16 possibly_damaging(0.891) TCGA-60-2698-01 2 196620855 196620855 A C DNAH7 Splice_Site p.X3862_splice 0.14 TCGA-60-2698-01 2 197171251 197171251 G A HECW2 Silent p.L925L 0.14 TCGA-60-2698-01 2 202050702 202050702 G A CASP10 Missense_Mutation p.E68K 0.18 tolerated(0.13) possibly_damaging(0.477) TCGA-60-2698-01 2 20232958 20232958 G T LAPTM4A 3'UTR 0.29 TCGA-60-2698-01 2 203760895 203760895 G C WDR12 Missense_Mutation p.L168V 0.11 tolerated(0.13) benign(0.014) TCGA-60-2698-01 2 204737534 204737534 G T CTLA4 Nonstop_Mutation p.*224Lext*16 0.24 TCGA-60-2698-01 2 207041686 207041686 A C GPR1 Missense_Mutation p.Y96D 0.31 deleterious(0) probably_damaging(1) TCGA-60-2698-01 2 207459510 207459510 G A ADAM23 Missense_Mutation p.D710N 0.15 deleterious(0.03) probably_damaging(0.997) TCGA-60-2698-01 2 20901344 20901344 C T C2orf43 Missense_Mutation p.E258K 0.04 tolerated(0.99) benign(0.006) TCGA-60-2698-01 2 211476995 211476995 C A CPS1 Missense_Mutation p.T855K 0.28 tolerated(1) benign(0.171) TCGA-60-2698-01 2 211502462 211502462 G T CPS1 Missense_Mutation p.K914N 0.17 deleterious(0) probably_damaging(0.916) TCGA-60-2698-01 2 211512728 211512728 G A CPS1 Missense_Mutation p.V1101I 0.29 tolerated(0.19) benign(0.003) TCGA-60-2698-01 2 211525268 211525268 G T CPS1 Silent p.G1278G 0.17 TCGA-60-2698-01 2 212483998 212483998 A C ERBB4 Silent p.G735G 0.12 TCGA-60-2698-01 2 215595156 215595156 G C BARD1 Missense_Mutation p.S660R 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-60-2698-01 2 218682809 218682809 G A TNS1 Missense_Mutation p.P1312S 0.12 tolerated(0.1) benign(0.029) TCGA-60-2698-01 2 219000499 219000499 C T CXCR2 Silent p.L325L 0.16 TCGA-60-2698-01 2 220103023 220103023 G C GLB1L Missense_Mutation p.F430L 0.33 tolerated(1) benign(0.001) TCGA-60-2698-01 2 220161194 220161194 G A PTPRN Silent p.G785G 0.28 TCGA-60-2698-01 2 225371641 225371641 C G CUL3 Missense_Mutation p.L321F 0.31 deleterious(0) probably_damaging(0.941) TCGA-60-2698-01 2 230638826 230638826 T A TRIP12 Missense_Mutation p.E1819V 0.24 tolerated(0.07) probably_damaging(0.997) TCGA-60-2698-01 2 230638827 230638827 C A TRIP12 Nonsense_Mutation p.E1819* 0.24 TCGA-60-2698-01 2 238672274 238672274 G A LRRFIP1 Missense_Mutation p.E640K 0.20 deleterious(0.05) possibly_damaging(0.698) TCGA-60-2698-01 2 242066101 242066101 G A PASK Silent p.L743L 0.32 TCGA-60-2698-01 2 27801450 27801450 G C C2orf16 Missense_Mutation p.E671Q 0.36 deleterious(0.03) probably_damaging(0.918) TCGA-60-2698-01 2 27887280 27887280 G C SLC4A1AP Missense_Mutation p.D221H 0.05 deleterious(0) benign(0.315) TCGA-60-2698-01 2 28762018 28762018 C T PLB1 Missense_Mutation p.S224F 0.21 tolerated(0.25) benign(0.052) TCGA-60-2698-01 2 3217970 3217970 C T TSSC1 Missense_Mutation p.D156N 0.24 tolerated(0.06) probably_damaging(0.956) TCGA-60-2698-01 2 32673984 32673984 G T BIRC6 Missense_Mutation p.D1536Y 0.33 possibly_damaging(0.819) TCGA-60-2698-01 2 44547706 44547706 C T SLC3A1 Silent p.F662F 0.05 TCGA-60-2698-01 2 48018263 48018263 G T MSH6 Splice_Site p.X153_splice 0.05 TCGA-60-2698-01 2 48059968 48059968 C T FBXO11 Missense_Mutation p.E365K 0.29 tolerated(0.06) benign(0.297) TCGA-60-2698-01 2 48687003 48687003 C T PPP1R21 Silent p.T162T 0.16 TCGA-60-2698-01 2 60679701 60679701 C T BCL11A 3'Flank 0.05 TCGA-60-2698-01 2 61561087 61561087 G A USP34 Missense_Mutation p.R922C 0.09 deleterious(0) probably_damaging(0.995) TCGA-60-2698-01 2 64126700 64126700 G A VPS54 Missense_Mutation p.P881S 0.26 tolerated(0.06) probably_damaging(0.999) TCGA-60-2698-01 2 69002330 69002330 G T ARHGAP25 Intron 0.25 TCGA-60-2698-01 2 71753403 71753403 C G DYSF Silent p.L401L 0.21 TCGA-60-2698-01 2 72968457 72968457 C A EXOC6B Silent p.V85V 0.04 TCGA-60-2698-01 2 73453006 73453006 G T SMYD5 Nonsense_Mutation p.E397* 0.21 TCGA-60-2698-01 2 74043401 74043401 C A C2orf78 Missense_Mutation p.P684Q 0.26 deleterious(0.01) probably_damaging(0.943) TCGA-60-2698-01 2 74690051 74690051 G A MOGS Missense_Mutation p.P289S 0.04 tolerated(0.15) probably_damaging(1) TCGA-60-2698-01 2 74902690 74902690 C G SEMA4F Missense_Mutation p.Q471E 0.23 tolerated(0.21) benign(0.005) TCGA-60-2698-01 2 80136780 80136780 G A CTNNA2 Missense_Mutation p.E305K 0.24 tolerated(0.22) possibly_damaging(0.761) TCGA-60-2698-01 2 89339875 89339875 G T IGKV1-12 Missense_Mutation p.P66H 0.17 deleterious(0) possibly_damaging(0.553) TCGA-60-2698-01 2 89339876 89339876 G T IGKV1-12 Missense_Mutation p.P66T 0.18 deleterious(0.01) benign(0.263) TCGA-60-2698-01 2 89384692 89384692 T G IGKV3-15 Missense_Mutation p.Q109P 0.36 deleterious(0.01) possibly_damaging(0.632) TCGA-60-2698-01 2 95539782 95539782 G C TEKT4 Missense_Mutation p.E214D 0.23 tolerated(1) benign(0.006) TCGA-60-2698-01 2 98866858 98866858 C G VWA3B Missense_Mutation p.I917M 0.29 tolerated(0.12) benign(0.343) TCGA-60-2698-01 3 100413697 100413697 C T GPR128 Missense_Mutation p.S749L 0.31 tolerated(0.18) possibly_damaging(0.698) TCGA-60-2698-01 3 102175084 102175084 G T ZPLD1 Silent p.V141V 0.18 TCGA-60-2698-01 3 105238952 105238952 A G ALCAM Missense_Mutation p.I39V 0.31 deleterious(0.01) possibly_damaging(0.68) TCGA-60-2698-01 3 108174595 108174595 A T MYH15 Missense_Mutation p.F770L 0.15 tolerated(0.16) benign(0.018) TCGA-60-2698-01 3 108279531 108279531 C T KIAA1524 Missense_Mutation p.E598K 0.03 deleterious(0.04) benign(0.198) TCGA-60-2698-01 3 109049596 109049596 C G DPPA4 Missense_Mutation p.E152Q 0.04 tolerated(0.26) benign(0.02) TCGA-60-2698-01 3 111603055 111603055 C T PHLDB2 Missense_Mutation p.S44F 0.12 deleterious_low_confidence(0.03) benign(0.012) TCGA-60-2698-01 3 111603312 111603312 C G PHLDB2 Missense_Mutation p.H130D 0.11 tolerated_low_confidence(0.38) benign(0.017) TCGA-60-2698-01 3 111842400 111842400 C T GCSAM Missense_Mutation p.E149K 0.04 deleterious(0) benign(0.344) TCGA-60-2698-01 3 113138899 113138899 G A WDR52 Nonsense_Mutation p.R179* 0.38 TCGA-60-2698-01 3 113440538 113440538 G A NAA50 3'UTR 0.15 TCGA-60-2698-01 3 113563411 113563411 C G GRAMD1C Missense_Mutation p.P30R 0.10 tolerated_low_confidence(0.08) benign(0.109) TCGA-60-2698-01 3 113664295 113664295 G A GRAMD1C Silent p.K653K 0.10 TCGA-60-2698-01 3 113720457 113720457 C G KIAA1407 Missense_Mutation p.K716N 0.17 deleterious(0) possibly_damaging(0.888) TCGA-60-2698-01 3 119886737 119886737 C G GPR156 Missense_Mutation p.E529D 0.22 tolerated(0.36) benign(0.254) TCGA-60-2698-01 3 120347245 120347245 G T HGD Missense_Mutation p.N440K 0.15 tolerated(0.33) benign(0.005) TCGA-60-2698-01 3 122126180 122126180 C G FAM162A Missense_Mutation p.L106V 0.15 tolerated(0.97) benign(0.009) TCGA-60-2698-01 3 122545861 122545861 G C DIRC2 Missense_Mutation p.E218Q 0.37 tolerated(0.57) benign(0.011) TCGA-60-2698-01 3 123420317 123420317 C A MYLK Missense_Mutation p.M810I 0.14 tolerated(0.19) benign(0.073) TCGA-60-2698-01 3 124281801 124281801 G T KALRN Nonsense_Mutation p.E54* 0.11 TCGA-60-2698-01 3 128292467 128292467 G A C3orf27 Nonsense_Mutation p.Q36* 0.04 TCGA-60-2698-01 3 128631375 128631375 G C ACAD9 Missense_Mutation p.Q597H 0.23 tolerated(0.12) benign(0.002) TCGA-60-2698-01 3 128706490 128706490 G T KIAA1257 Missense_Mutation p.F212L 0.05 tolerated(0.52) benign(0.001) TCGA-60-2698-01 3 129152001 129152001 C G MBD4 Missense_Mutation p.E501Q 0.05 deleterious(0) possibly_damaging(0.794) TCGA-60-2698-01 3 130305487 130305487 C T COL6A6 Missense_Mutation p.R1370W 0.28 deleterious(0.03) possibly_damaging(0.724) TCGA-60-2698-01 3 130340679 130340679 C T COL6A6 Silent p.P1610P 0.19 TCGA-60-2698-01 3 130435332 130435332 T A PIK3R4 Missense_Mutation p.M747L 0.17 tolerated(0.33) benign(0) TCGA-60-2698-01 3 131102151 131102151 C A NUDT16 3'UTR 0.32 TCGA-60-2698-01 3 132175390 132175390 C T DNAJC13 Missense_Mutation p.S382L 0.11 deleterious(0.01) possibly_damaging(0.449) TCGA-60-2698-01 3 132257044 132257044 C T DNAJC13 Missense_Mutation p.T2217I 0.08 deleterious(0) possibly_damaging(0.846) TCGA-60-2698-01 3 132423047 132423047 C G NPHP3 Missense_Mutation p.E507Q 0.16 tolerated(0.23) benign(0.038) TCGA-60-2698-01 3 134362194 134362194 G A KY Nonsense_Mutation p.Q76* 0.28 TCGA-60-2698-01 3 140997235 140997235 G A ACPL2 Missense_Mutation p.R44Q 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-60-2698-01 3 141290324 141290324 G T RASA2 Missense_Mutation p.R366L 0.33 deleterious(0.02) probably_damaging(0.98) TCGA-60-2698-01 3 142741338 142741338 G C U2SURP Splice_Site p.X285_splice 0.13 TCGA-60-2698-01 3 148596267 148596268 - T CPA3 Frame_Shift_Ins p.D105* 0.13 TCGA-60-2698-01 3 148786065 148786065 G C HLTF Missense_Mutation p.L318V 0.07 deleterious(0.01) probably_damaging(0.958) TCGA-60-2698-01 3 152058442 152058442 G C TMEM14E Silent p.L84L 0.16 TCGA-60-2698-01 3 160783332 160783332 G C PPM1L Missense_Mutation p.R239T 0.06 deleterious(0.01) possibly_damaging(0.579) TCGA-60-2698-01 3 164754253 164754253 A T SI Silent p.P813P 0.18 TCGA-60-2698-01 3 164755796 164755796 C T SI Nonsense_Mutation p.W773* 0.36 TCGA-60-2698-01 3 165548367 165548367 G A BCHE Missense_Mutation p.S152F 0.06 deleterious(0) probably_damaging(1) TCGA-60-2698-01 3 166960328 166960328 T C ZBBX Silent p.S786S 0.45 TCGA-60-2698-01 3 168845735 168845735 C T MECOM Missense_Mutation p.E119K 0.19 tolerated(0.81) benign(0.197) TCGA-60-2698-01 3 169644372 169644372 C G SAMD7 Missense_Mutation p.Q108E 0.36 deleterious(0) benign(0.347) TCGA-60-2698-01 3 169998155 169998155 G C PRKCI Missense_Mutation p.M282I 0.03 tolerated(0.19) probably_damaging(0.97) TCGA-60-2698-01 3 171394572 171394572 G A PLD1 Missense_Mutation p.S683F 0.11 deleterious(0.05) probably_damaging(0.947) TCGA-60-2698-01 3 171442514 171442514 C T PLD1 Missense_Mutation p.G244R 0.05 tolerated(0.08) probably_damaging(0.939) TCGA-60-2698-01 3 179537697 179537697 G C PEX5L Missense_Mutation p.S297C 0.10 deleterious(0) possibly_damaging(0.894) TCGA-60-2698-01 3 183013168 183013168 C G MCF2L2 Missense_Mutation p.R532P 0.07 deleterious(0) probably_damaging(0.998) TCGA-60-2698-01 3 183756706 183756706 C G HTR3D Silent p.L436L 0.07 TCGA-60-2698-01 3 184008857 184008857 C T ECE2 Missense_Mutation p.R740W 0.36 tolerated(0.06) probably_damaging(0.963) TCGA-60-2698-01 3 184009925 184009925 C T ECE2 Missense_Mutation p.R851C 0.05 deleterious(0) probably_damaging(1) TCGA-60-2698-01 3 184042076 184042076 G C EIF4G1 Missense_Mutation p.D861H 0.04 deleterious(0) probably_damaging(0.927) TCGA-60-2698-01 3 184045480 184045480 C A EIF4G1 Silent p.L1263L 0.08 TCGA-60-2698-01 3 184587302 184587302 A G VPS8 Missense_Mutation p.I544V 0.36 tolerated(1) benign(0) TCGA-60-2698-01 3 184714182 184714182 G C VPS8 Silent p.L1243L 0.09 TCGA-60-2698-01 3 185766536 185766536 G A ETV5 Silent p.L475L 0.06 TCGA-60-2698-01 3 186395356 186395356 C G HRG Missense_Mutation p.P421R 0.08 deleterious(0.02) possibly_damaging(0.652) TCGA-60-2698-01 3 186395357 186395357 C A HRG Silent p.P421P 0.07 TCGA-60-2698-01 3 186435490 186435490 G C KNG1 Missense_Mutation p.Q53H 0.10 tolerated(0.06) possibly_damaging(0.568) TCGA-60-2698-01 3 186442879 186442879 G A KNG1 Missense_Mutation p.E132K 0.11 tolerated(0.24) benign(0.014) TCGA-60-2698-01 3 187419846 187419846 G T RTP2 Missense_Mutation p.A24E 0.10 tolerated(1) benign(0.021) TCGA-60-2698-01 3 187447462 187447462 C A BCL6 Missense_Mutation p.R244L 0.18 tolerated(0.35) possibly_damaging(0.599) TCGA-60-2698-01 3 189507578 189507578 C G TP63 Intron 0.06 TCGA-60-2698-01 3 194118280 194118280 G A GP5 Silent p.L244L 0.13 TCGA-60-2698-01 3 194991428 194991428 G A XXYLT1 Silent p.V120V 0.13 TCGA-60-2698-01 3 195489005 195489005 G T MUC4 Missense_Mutation p.S4822Y 0.11 probably_damaging(0.951) TCGA-60-2698-01 3 195516771 195516771 C A MUC4 Silent p.G560G 0.13 TCGA-60-2698-01 3 3081838 3081838 G T CNTN4 Missense_Mutation p.V761L 0.36 deleterious(0.01) possibly_damaging(0.804) TCGA-60-2698-01 3 32031500 32031500 G C ZNF860 Missense_Mutation p.G310A 0.07 deleterious(0.03) probably_damaging(0.93) TCGA-60-2698-01 3 32995269 32995269 G A CCR4 Missense_Mutation p.V119M 0.07 tolerated(0.22) possibly_damaging(0.907) TCGA-60-2698-01 3 36875113 36875113 G T TRANK1 Missense_Mutation p.F1943L 0.17 deleterious(0) probably_damaging(0.995) TCGA-60-2698-01 3 37560748 37560748 C G ITGA9 Intron 0.12 TCGA-60-2698-01 3 40231546 40231546 G A MYRIP Silent p.R419R 0.34 TCGA-60-2698-01 3 40571743 40571743 G A ZNF621 Silent p.E65E 0.11 TCGA-60-2698-01 3 44763395 44763395 G C ZNF502 Missense_Mutation p.Q362H 0.39 tolerated(0.34) benign(0.019) TCGA-60-2698-01 3 47462159 47462159 G A SCAP Missense_Mutation p.S483F 0.09 deleterious(0.05) benign(0.017) TCGA-60-2698-01 3 48474121 48474121 C G CCDC51 Missense_Mutation p.R311S 0.41 deleterious(0.02) benign(0.073) TCGA-60-2698-01 3 52360904 52360904 G T DNAH1 Silent p.L245L 0.16 TCGA-60-2698-01 3 52420190 52420190 C T DNAH1 Silent p.I2880I 0.13 TCGA-60-2698-01 3 52643429 52643429 C G PBRM1 Missense_Mutation p.D823H 0.33 deleterious(0) possibly_damaging(0.849) TCGA-60-2698-01 3 53851719 53851719 C T CHDH 3'UTR 0.42 TCGA-60-2698-01 3 57291330 57291330 C G APPL1 Missense_Mutation p.S435C 0.32 deleterious(0.02) possibly_damaging(0.907) TCGA-60-2698-01 3 58134386 58134386 C T FLNB Silent p.F1997F 0.35 TCGA-60-2698-01 3 63965681 63965681 G C ATXN7 Missense_Mutation p.G197A 0.08 tolerated(0.1) benign(0.159) TCGA-60-2698-01 3 64004611 64004611 G C PSMD6 Silent p.L200L 0.14 TCGA-60-2698-01 3 73111632 73111632 G C EBLN2 Missense_Mutation p.D134H 0.09 tolerated(0.22) probably_damaging(0.961) TCGA-60-2698-01 3 8787497 8787497 G A CAV3 Missense_Mutation p.A134T 0.36 deleterious(0.05) benign(0.09) TCGA-60-2698-01 3 96706180 96706180 G A EPHA6 Missense_Mutation p.A153T 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-60-2698-01 3 97510649 97510649 G T ARL6 Nonsense_Mutation p.E172* 0.16 TCGA-60-2698-01 3 97731304 97731304 C T GABRR3 Intron 0.16 TCGA-60-2698-01 3 97888090 97888090 C A OR5H15 Missense_Mutation p.P183T 0.12 deleterious(0) probably_damaging(0.982) TCGA-60-2698-01 3 98072901 98072901 G C OR5K4 Silent p.L68L 0.32 TCGA-60-2698-01 3 98216823 98216823 A G OR5K2 Missense_Mutation p.Q100R 0.12 deleterious(0) possibly_damaging(0.901) TCGA-60-2698-01 3 98538068 98538068 C G DCBLD2 Missense_Mutation p.L355F 0.28 deleterious(0.03) possibly_damaging(0.831) TCGA-60-2698-01 3 9945092 9945092 C G IL17RE Missense_Mutation p.F48L 0.34 tolerated_low_confidence(0.4) benign(0.003) TCGA-60-2698-01 4 114276263 114276263 G A ANK2 Silent p.Q2163Q 0.44 TCGA-60-2698-01 4 119035982 119035982 G C NDST3 Missense_Mutation p.G364A 0.07 deleterious(0.03) possibly_damaging(0.859) TCGA-60-2698-01 4 119203131 119203131 G C PRSS12 Nonsense_Mutation p.S863* 0.39 TCGA-60-2698-01 4 121958117 121958117 C T NDNF Missense_Mutation p.E337K 0.42 deleterious(0.01) benign(0.078) TCGA-60-2698-01 4 126371212 126371212 G T FAT4 Missense_Mutation p.G3014V 0.31 probably_damaging(1) TCGA-60-2698-01 4 140291423 140291423 G A NAA15 Silent p.K604K 0.10 TCGA-60-2698-01 4 143003189 143003189 C T INPP4B Missense_Mutation p.M879I 0.39 deleterious(0) probably_damaging(0.997) TCGA-60-2698-01 4 143029291 143029291 G C INPP4B Missense_Mutation p.L777V 0.09 deleterious(0.04) benign(0.06) TCGA-60-2698-01 4 146617716 146617716 C G C4orf51 Nonsense_Mutation p.S80* 0.34 TCGA-60-2698-01 4 148575157 148575157 C G PRMT10 Missense_Mutation p.E631Q 0.09 tolerated(0.16) benign(0.01) TCGA-60-2698-01 4 153244124 153244124 G C FBXW7 Nonsense_Mutation p.S678* 0.15 TCGA-60-2698-01 4 155157121 155157121 C G DCHS2 Missense_Mutation p.D2440H 0.07 tolerated(0.11) benign(0.396) TCGA-60-2698-01 4 158059978 158059978 G A GLRB Missense_Mutation p.D210N 0.35 deleterious(0.02) probably_damaging(0.999) TCGA-60-2698-01 4 165962382 165962382 G A TRIM60 Nonsense_Mutation p.W386* 0.38 TCGA-60-2698-01 4 166006831 166006831 C A TMEM192 Missense_Mutation p.R195L 0.11 tolerated(0.62) benign(0.246) TCGA-60-2698-01 4 177608573 177608573 C G VEGFC Missense_Mutation p.G305R 0.43 deleterious(0) probably_damaging(1) TCGA-60-2698-01 4 185687114 185687114 C G ACSL1 Silent p.L430L 0.34 TCGA-60-2698-01 4 186533109 186533109 C T SORBS2 Missense_Mutation p.R1070K 0.08 tolerated(0.12) benign(0.129) TCGA-60-2698-01 4 187207596 187207596 C G F11 Missense_Mutation p.S503C 0.38 deleterious(0) probably_damaging(0.996) TCGA-60-2698-01 4 2930316 2930316 T C ADD1 3'UTR 0.41 TCGA-60-2698-01 4 36093524 36093524 G A ARAP2 Silent p.L1468L 0.05 TCGA-60-2698-01 4 38138813 38138813 G T TBC1D1 Nonsense_Mutation p.E1122* 0.31 TCGA-60-2698-01 4 38907184 38907184 C G FAM114A1 Missense_Mutation p.L160V 0.45 deleterious(0) probably_damaging(0.998) TCGA-60-2698-01 4 39482143 39482143 G A LIAS 3'Flank 0.47 TCGA-60-2698-01 4 46388187 46388187 G T GABRA2 Missense_Mutation p.Q31K 0.17 tolerated(0.86) benign(0) TCGA-60-2698-01 4 48559526 48559526 C G FRYL Missense_Mutation p.G1357R 0.15 deleterious(0) probably_damaging(0.999) TCGA-60-2698-01 4 52861814 52861814 G C LRRC66 Missense_Mutation p.F458L 0.17 tolerated(0.42) benign(0.011) TCGA-60-2698-01 4 53497298 53497298 G C USP46 Missense_Mutation p.S17C 0.25 deleterious(0) possibly_damaging(0.886) TCGA-60-2698-01 4 53751992 53751992 G C SCFD2 Silent p.L628L 0.14 TCGA-60-2698-01 4 56744156 56744156 G C EXOC1 Missense_Mutation p.R383T 0.18 deleterious(0.01) possibly_damaging(0.719) TCGA-60-2698-01 4 56886933 56886933 G A CEP135 Missense_Mutation p.E1103K 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-60-2698-01 4 57244467 57244467 G C AASDH Missense_Mutation p.S172C 0.16 tolerated(0.09) benign(0.06) TCGA-60-2698-01 4 66213904 66213904 G C EPHA5 Missense_Mutation p.I842M 0.18 deleterious(0) probably_damaging(0.992) TCGA-60-2698-01 4 68527924 68527924 C A UBA6 Nonsense_Mutation p.E363* 0.19 TCGA-60-2698-01 4 68544165 68544165 C G UBA6 Missense_Mutation p.K115N 0.11 tolerated(0.25) benign(0.049) TCGA-60-2698-01 4 69433678 69433678 G C UGT2B17 Missense_Mutation p.F175L 0.20 tolerated(0.07) benign(0.144) TCGA-60-2698-01 4 69682416 69682416 A G UGT2B10 Missense_Mutation p.N227D 0.14 tolerated(0.68) benign(0.002) TCGA-60-2698-01 4 70350951 70350951 G T UGT2B4 Missense_Mutation p.L429M 0.07 deleterious(0.01) possibly_damaging(0.867) TCGA-60-2698-01 4 73178122 73178122 C T ADAMTS3 Missense_Mutation p.E603K 0.16 deleterious(0.01) benign(0.297) TCGA-60-2698-01 4 79188522 79188522 G A FRAS1 Missense_Mutation p.C306Y 0.20 probably_damaging(0.995) TCGA-60-2698-01 4 80246623 80246623 A G NAA11 Missense_Mutation p.Y137H 0.21 deleterious(0.02) probably_damaging(0.958) TCGA-60-2698-01 4 83802003 83802003 G C SEC31A Missense_Mutation p.S51C 0.15 deleterious(0.02) possibly_damaging(0.592) TCGA-60-2698-01 4 8394128 8394128 G C ACOX3 Missense_Mutation p.A411G 0.04 tolerated(0.17) benign(0.104) TCGA-60-2698-01 4 84374925 84374925 G C HELQ Silent p.L157L 0.19 TCGA-60-2698-01 4 87695598 87695598 C T PTPN13 Nonsense_Mutation p.Q1813* 0.24 TCGA-60-2698-01 4 88116479 88116479 G C KLHL8 Silent p.L71L 0.17 TCGA-60-2698-01 4 90169059 90169059 T C GPRIN3 Missense_Mutation p.I735V 0.18 deleterious(0.04) benign(0.039) TCGA-60-2698-01 4 91549249 91549249 A T CCSER1 Missense_Mutation p.S600C 0.18 deleterious(0) probably_damaging(0.998) TCGA-60-2698-01 4 91549337 91549337 C T CCSER1 Missense_Mutation p.T629M 0.05 deleterious(0) probably_damaging(0.999) TCGA-60-2698-01 4 94006149 94006149 G T GRID2 Missense_Mutation p.C83F 0.36 deleterious(0) probably_damaging(1) TCGA-60-2698-01 5 100147594 100147594 C G ST8SIA4 Missense_Mutation p.R346T 0.09 benign(0.015) TCGA-60-2698-01 5 102465360 102465360 C T PPIP5K2 Missense_Mutation p.H23Y 0.10 deleterious_low_confidence(0.03) benign(0.001) TCGA-60-2698-01 5 102522026 102522026 C T PPIP5K2 Missense_Mutation p.H1059Y 0.06 tolerated_low_confidence(0.13) benign(0.098) TCGA-60-2698-01 5 112178500 112178500 G C APC Missense_Mutation p.Q2403H 0.10 benign(0.044) TCGA-60-2698-01 5 112720775 112720775 C G MCC Missense_Mutation p.R102P 0.16 tolerated_low_confidence(0.33) benign(0.212) TCGA-60-2698-01 5 114611184 114611184 G A CCDC112 Missense_Mutation p.S216L 0.16 tolerated(0.13) benign(0.009) TCGA-60-2698-01 5 118485784 118485784 C G DMXL1 Nonsense_Mutation p.S1421* 0.18 TCGA-60-2698-01 5 118503367 118503367 G C DMXL1 Missense_Mutation p.D1736H 0.23 deleterious(0) probably_damaging(0.93) TCGA-60-2698-01 5 125952978 125952978 C G PHAX Missense_Mutation p.L290V 0.28 deleterious(0.01) probably_damaging(0.93) TCGA-60-2698-01 5 127469886 127469886 C G SLC12A2 Missense_Mutation p.I406M 0.24 tolerated(0.27) benign(0.068) TCGA-60-2698-01 5 131321147 131321147 G - ACSL6 Frame_Shift_Del p.P290Rfs*37 0.21 TCGA-60-2698-01 5 134345085 134345085 G A CATSPER3 Missense_Mutation p.E281K 0.28 tolerated(0.16) benign(0.062) TCGA-60-2698-01 5 137906704 137906704 C T HSPA9 Missense_Mutation p.A119T 0.08 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-60-2698-01 5 140256033 140256033 G C PCDHA12 Missense_Mutation p.G326R 0.53 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-60-2698-01 5 140482129 140482129 G A PCDHB3 Silent p.E632E 0.45 TCGA-60-2698-01 5 140589877 140589877 C A PCDHB12 Silent p.P466P 0.49 TCGA-60-2698-01 5 140735937 140735937 G T PCDHGA4 Silent p.L390L 0.50 TCGA-60-2698-01 5 140774445 140774445 C T PCDHGA8 Missense_Mutation p.L689F 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.491) TCGA-60-2698-01 5 140798363 140798363 G C PCDHGB7 Missense_Mutation p.E313Q 0.25 tolerated(0.12) possibly_damaging(0.862) TCGA-60-2698-01 5 140799720 140799720 T G PCDHGB7 Missense_Mutation p.F765C 0.53 deleterious(0.02) benign(0.014) TCGA-60-2698-01 5 140801496 140801496 C T PCDHGA11 Silent p.L234L 0.32 TCGA-60-2698-01 5 146773613 146773613 G C DPYSL3 Missense_Mutation p.I680M 0.13 deleterious(0) probably_damaging(0.993) TCGA-60-2698-01 5 150416412 150416412 C A TNIP1 Missense_Mutation p.G445V 0.23 tolerated(0.09) probably_damaging(0.979) TCGA-60-2698-01 5 150925111 150925111 G A FAT2 Silent p.I1859I 0.28 TCGA-60-2698-01 5 153372613 153372613 C G FAM114A2 Missense_Mutation p.E481Q 0.23 tolerated(1) benign(0.021) TCGA-60-2698-01 5 154199911 154199911 C A FAXDC2 Nonsense_Mutation p.E323* 0.11 TCGA-60-2698-01 5 154393886 154393886 G T KIF4B Missense_Mutation p.R156L 0.53 deleterious(0.02) benign(0.175) TCGA-60-2698-01 5 156679693 156679693 G C ITK 3'UTR 0.50 TCGA-60-2698-01 5 156747723 156747723 T A CYFIP2 Missense_Mutation p.N502K 0.41 tolerated(0.36) benign(0.155) TCGA-60-2698-01 5 157159883 157159883 G A THG1L Missense_Mutation p.E67K 0.18 tolerated(0.26) benign(0.034) TCGA-60-2698-01 5 161300180 161300180 A T GABRA1 Nonsense_Mutation p.K105* 0.19 TCGA-60-2698-01 5 162944542 162944542 G A MAT2B Intron 0.30 TCGA-60-2698-01 5 16754996 16754996 C A MYO10 Missense_Mutation p.A624S 0.25 tolerated(0.23) probably_damaging(0.996) TCGA-60-2698-01 5 177733903 177733903 C T COL23A1 Missense_Mutation p.G127S 0.10 deleterious(0) unknown(0) TCGA-60-2698-01 5 178416114 178416114 G A GRM6 Silent p.D392D 0.46 TCGA-60-2698-01 5 178505850 178505850 G C ZNF354C Missense_Mutation p.E139D 0.03 tolerated(0.54) benign(0.026) TCGA-60-2698-01 5 178562931 178562931 G C ADAMTS2 Silent p.L688L 0.24 TCGA-60-2698-01 5 182199 182199 G C PLEKHG4B Missense_Mutation p.D1193H 0.06 deleterious(0.03) probably_damaging(0.96) TCGA-60-2698-01 5 19838895 19838895 C A CDH18 Missense_Mutation p.M67I 0.19 tolerated(0.19) benign(0) TCGA-60-2698-01 5 21975445 21975445 G C CDH12 Nonsense_Mutation p.S94* 0.09 TCGA-60-2698-01 5 23526672 23526672 G A PRDM9 Missense_Mutation p.R492K 0.21 tolerated(0.31) benign(0.425) TCGA-60-2698-01 5 23527570 23527570 C A PRDM9 Silent p.L791L 0.18 TCGA-60-2698-01 5 24498608 24498608 G T CDH10 Missense_Mutation p.R472S 0.28 tolerated(0.32) probably_damaging(0.988) TCGA-60-2698-01 5 33561194 33561194 C A ADAMTS12 Missense_Mutation p.D1355Y 0.24 deleterious(0.01) probably_damaging(0.984) TCGA-60-2698-01 5 33576160 33576160 T A ADAMTS12 Missense_Mutation p.E1324V 0.26 deleterious(0) possibly_damaging(0.832) TCGA-60-2698-01 5 34908871 34908871 C G RAD1 Nonstop_Mutation p.*283Sext*2 0.07 TCGA-60-2698-01 5 36115160 36115160 G A LMBRD2 Missense_Mutation p.S500L 0.12 deleterious(0) benign(0.333) TCGA-60-2698-01 5 37293071 37293071 C G NUP155 Missense_Mutation p.R1316T 0.29 tolerated(1) benign(0.005) TCGA-60-2698-01 5 37723010 37723010 C T WDR70 Missense_Mutation p.T524I 0.07 tolerated(0.81) benign(0.001) TCGA-60-2698-01 5 41510613 41510613 C T PLCXD3 Missense_Mutation p.G6R 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.798) TCGA-60-2698-01 5 5232531 5232531 C T ADAMTS16 Silent p.P584P 0.04 TCGA-60-2698-01 5 5235206 5235206 A C ADAMTS16 Missense_Mutation p.S644R 0.30 deleterious(0.01) benign(0.127) TCGA-60-2698-01 5 64766952 64766952 G C ADAMTS6 Missense_Mutation p.L39V 0.05 deleterious(0.03) possibly_damaging(0.53) TCGA-60-2698-01 5 72801160 72801160 G C BTF3 3'UTR 0.57 TCGA-60-2698-01 5 73163738 73163738 C T ARHGEF28 Silent p.S730S 0.36 TCGA-60-2698-01 5 74986241 74986241 C G POC5 Missense_Mutation p.Q314H 0.37 deleterious(0.03) probably_damaging(0.977) TCGA-60-2698-01 5 79029970 79029970 A T CMYA5 Silent p.T1794T 0.34 TCGA-60-2698-01 5 83433136 83433136 C - EDIL3 Frame_Shift_Del p.G131Vfs*72 0.25 TCGA-60-2698-01 5 85578692 85578692 G T NBPF22P RNA 0.50 TCGA-60-2698-01 5 86679528 86679528 A G RASA1 Splice_Site p.X897_splice 0.45 TCGA-60-2698-01 5 88056937 88056937 C G MEF2C Missense_Mutation p.L108F 0.29 deleterious(0) probably_damaging(0.998) TCGA-60-2698-01 5 90149175 90149175 G A GPR98 Missense_Mutation p.G5760E 0.53 probably_damaging(0.972) TCGA-60-2698-01 5 95226858 95226858 G C ELL2 Missense_Mutation p.I570M 0.06 tolerated(0.42) benign(0.125) TCGA-60-2698-01 5 96518926 96518926 C T CTD-2215E18.1 Missense_Mutation p.P83S 0.25 possibly_damaging(0.81) TCGA-60-2698-01 6 100062341 100062341 C G PRDM13 Missense_Mutation p.F610L 0.17 deleterious(0) probably_damaging(0.999) TCGA-60-2698-01 6 101296127 101296127 G A ASCC3 Missense_Mutation p.S233L 0.07 tolerated(0.29) benign(0.008) TCGA-60-2698-01 6 108225923 108225923 G A SEC63 Nonsense_Mutation p.Q322* 0.36 TCGA-60-2698-01 6 110953259 110953259 C A CDK19 Missense_Mutation p.G207V 0.20 deleterious(0) possibly_damaging(0.58) TCGA-60-2698-01 6 111583533 111583534 TG - KIAA1919 Frame_Shift_Del p.S35Ffs*72 0.08 TCGA-60-2698-01 6 112671663 112671663 A G RFPL4B Silent p.G251G 0.25 TCGA-60-2698-01 6 116565164 116565164 G C NT5DC1 Missense_Mutation p.D449H 0.15 tolerated(0.06) benign(0.117) TCGA-60-2698-01 6 116758235 116758235 G A DSE Silent p.E868E 0.05 TCGA-60-2698-01 6 117609813 117609813 C T ROS1 Missense_Mutation p.E2296K 0.31 deleterious_low_confidence(0.01) benign(0.242) TCGA-60-2698-01 6 117706937 117706937 T C ROS1 Missense_Mutation p.E738G 0.14 tolerated(0.09) benign(0.357) TCGA-60-2698-01 6 123600204 123600204 G A TRDN Missense_Mutation p.P512S 0.13 deleterious_low_confidence(0) probably_damaging(0.915) TCGA-60-2698-01 6 128150625 128150625 C A THEMIS Missense_Mutation p.M235I 0.16 deleterious(0.01) benign(0.311) TCGA-60-2698-01 6 130466548 130466548 T C SAMD3 Silent p.T405T 0.28 TCGA-60-2698-01 6 131186730 131186730 T C EPB41L2 Silent p.A925A 0.35 TCGA-60-2698-01 6 131225642 131225642 G A EPB41L2 Missense_Mutation p.P298S 0.17 deleterious(0) probably_damaging(0.999) TCGA-60-2698-01 6 132859711 132859711 G T TAAR9 Nonsense_Mutation p.E95* 0.20 TCGA-60-2698-01 6 132874080 132874080 T A TAAR8 Silent p.T83T 0.16 TCGA-60-2698-01 6 132939116 132939116 G C TAAR2 Missense_Mutation p.P77A 0.17 deleterious(0) possibly_damaging(0.822) TCGA-60-2698-01 6 133100505 133100505 C G SLC18B1 Missense_Mutation p.A233P 0.28 tolerated(0.15) benign(0.29) TCGA-60-2698-01 6 135769471 135769471 G A AHI1 Missense_Mutation p.S528L 0.11 deleterious(0) probably_damaging(0.958) TCGA-60-2698-01 6 13625971 13625971 G A RANBP9 Missense_Mutation p.S658L 0.06 deleterious(0) probably_damaging(0.991) TCGA-60-2698-01 6 139487561 139487561 G C HECA Missense_Mutation p.E138Q 0.12 deleterious(0.03) probably_damaging(0.994) TCGA-60-2698-01 6 143092476 143092476 C A HIVEP2 Missense_Mutation p.D1134Y 0.32 deleterious(0.01) possibly_damaging(0.907) TCGA-60-2698-01 6 144183253 144183253 G A LTV1 Silent p.L312L 0.32 TCGA-60-2698-01 6 144835108 144835108 C G UTRN Missense_Mutation p.Q1670E 0.13 tolerated(0.07) probably_damaging(0.996) TCGA-60-2698-01 6 144843120 144843120 T G UTRN Missense_Mutation p.I1849S 0.04 tolerated(0.08) benign(0.002) TCGA-60-2698-01 6 146207456 146207456 T C SHPRH 3'UTR 0.27 TCGA-60-2698-01 6 151121996 151121996 C G PLEKHG1 Silent p.L257L 0.09 TCGA-60-2698-01 6 151161515 151161515 C G PLEKHG1 Nonsense_Mutation p.S1214* 0.05 TCGA-60-2698-01 6 151686676 151686676 C T ZBTB2 Missense_Mutation p.E509K 0.16 tolerated_low_confidence(0.09) probably_damaging(0.971) TCGA-60-2698-01 6 151936728 151936728 A G CCDC170 Missense_Mutation p.R621G 0.19 deleterious(0.01) benign(0.059) TCGA-60-2698-01 6 152614876 152614876 C T SYNE1 Silent p.E5953E 0.35 TCGA-60-2698-01 6 152697651 152697651 C A SYNE1 Missense_Mutation p.Q3063H 0.38 possibly_damaging(0.794) TCGA-60-2698-01 6 152831423 152831423 C T SYNE1 Silent p.E162E 0.17 TCGA-60-2698-01 6 155597295 155597295 C T CLDN20 Silent p.L148L 0.05 TCGA-60-2698-01 6 15627678 15627678 G C DTNBP1 Missense_Mutation p.S84C 0.45 deleterious(0.04) probably_damaging(0.999) TCGA-60-2698-01 6 157527676 157527676 G C ARID1B Missense_Mutation p.D1801H 0.27 probably_damaging(0.999) TCGA-60-2698-01 6 160211594 160211594 G C MRPL18 5'UTR 0.12 TCGA-60-2698-01 6 160469408 160469408 C G IGF2R Missense_Mutation p.L783V 0.06 deleterious(0) probably_damaging(0.983) TCGA-60-2698-01 6 165715321 165715321 G C C6orf118 Missense_Mutation p.P164A 0.30 tolerated(0.83) possibly_damaging(0.728) TCGA-60-2698-01 6 25811766 25811766 G C SLC17A1 Silent p.L346L 0.16 TCGA-60-2698-01 6 26027306 26027306 G A HIST1H4B Missense_Mutation p.L59F 0.21 deleterious(0.02) possibly_damaging(0.647) TCGA-60-2698-01 6 26217427 26217427 G C HIST1H2AE Missense_Mutation p.K75N 0.06 deleterious_low_confidence(0.01) benign(0.009) TCGA-60-2698-01 6 26250597 26250597 G C HIST1H3F Missense_Mutation p.F79L 0.42 deleterious_low_confidence(0.02) benign(0.02) TCGA-60-2698-01 6 26370746 26370746 G A BTN3A2 Missense_Mutation p.M210I 0.06 tolerated(1) benign(0.027) TCGA-60-2698-01 6 28254933 28254933 A T PGBD1 Silent p.P210P 0.26 TCGA-60-2698-01 6 29912276 29912276 G C HLA-A Splice_Site p.X299_splice 0.28 TCGA-60-2698-01 6 31525984 31525984 G A NFKBIL1 Missense_Mutation p.E248K 0.38 tolerated(0.21) probably_damaging(0.997) TCGA-60-2698-01 6 31631710 31631710 C A GPANK1 Missense_Mutation p.Q182H 0.45 deleterious(0.03) probably_damaging(0.999) TCGA-60-2698-01 6 31695431 31695431 C G DDAH2 Silent p.L210L 0.03 TCGA-60-2698-01 6 31696795 31696795 C A DDAH2 Silent p.L48L 0.08 TCGA-60-2698-01 6 31709041 31709041 G C MSH5 Missense_Mutation p.E83D 0.36 tolerated(0.44) benign(0.003) TCGA-60-2698-01 6 32163487 32163487 G A NOTCH4 Silent p.G1913G 0.48 TCGA-60-2698-01 6 33244195 33244195 G C RPS18 Missense_Mutation p.K137N 0.48 deleterious(0) unknown(0) TCGA-60-2698-01 6 33261388 33261388 A G RGL2 Missense_Mutation p.W533R 0.14 deleterious(0) probably_damaging(0.974) TCGA-60-2698-01 6 33281611 33281611 G C TAPBP Missense_Mutation p.A23G 0.37 tolerated(0.18) benign(0.007) TCGA-60-2698-01 6 34574439 34574439 G A C6orf106 Missense_Mutation p.P252S 0.11 tolerated_low_confidence(0.19) benign(0.164) TCGA-60-2698-01 6 35919038 35919038 C T SLC26A8 Missense_Mutation p.V792M 0.45 deleterious(0.01) benign(0.149) TCGA-60-2698-01 6 36168502 36168502 G C BRPF3 Missense_Mutation p.A135P 0.44 tolerated(0.38) probably_damaging(0.974) TCGA-60-2698-01 6 38840393 38840393 C G DNAH8 Missense_Mutation p.L2141V 0.40 probably_damaging(0.957) TCGA-60-2698-01 6 41129307 41129307 C T TREM2 Missense_Mutation p.G29S 0.07 deleterious(0) probably_damaging(1) TCGA-60-2698-01 6 41897925 41897925 G C BYSL Missense_Mutation p.E163Q 0.22 tolerated(0.51) benign(0.053) TCGA-60-2698-01 6 41908702 41908702 G T CCND3 Intron 0.12 TCGA-60-2698-01 6 42858370 42858370 G C C6orf226 Missense_Mutation p.R53G 0.13 deleterious_low_confidence(0.03) benign(0.433) TCGA-60-2698-01 6 43156308 43156308 C G CUL9 Missense_Mutation p.Q679E 0.09 tolerated(0.15) benign(0.093) TCGA-60-2698-01 6 44360434 44360434 G T CDC5L Missense_Mutation p.K60N 0.18 deleterious(0) probably_damaging(0.991) TCGA-60-2698-01 6 46678382 46678382 G T PLA2G7 Missense_Mutation p.A226E 0.27 deleterious(0) probably_damaging(0.981) TCGA-60-2698-01 6 46777263 46777263 A G MEP1A Silent p.Q123Q 0.32 TCGA-60-2698-01 6 46800903 46800903 C T MEP1A Nonsense_Mutation p.Q413* 0.36 TCGA-60-2698-01 6 47779408 47779408 A G OPN5 Splice_Site p.X333_splice 0.34 TCGA-60-2698-01 6 49754844 49754844 G A PGK2 Silent p.V19V 0.03 TCGA-60-2698-01 6 49986831 49986831 C G DEFB110 Missense_Mutation p.K21N 0.09 tolerated(0.08) benign(0.01) TCGA-60-2698-01 6 50791467 50791467 G C TFAP2B Silent p.S143S 0.20 TCGA-60-2698-01 6 50791468 50791468 G A TFAP2B Missense_Mutation p.V144I 0.23 tolerated(0.23) benign(0.008) TCGA-60-2698-01 6 51917955 51917955 G C PKHD1 Missense_Mutation p.Q687E 0.32 tolerated(0.12) benign(0.016) TCGA-60-2698-01 6 52054091 52054091 G C IL17A 3'UTR 0.27 TCGA-60-2698-01 6 52659012 52659012 G A GSTA1 Silent p.L109L 0.17 TCGA-60-2698-01 6 56044530 56044530 C G COL21A1 Missense_Mutation p.K162N 0.39 tolerated(0.22) benign(0.155) TCGA-60-2698-01 6 56346973 56346973 C G DST Missense_Mutation p.E4513Q 0.18 probably_damaging(0.999) TCGA-60-2698-01 6 56497772 56497772 C T DST Missense_Mutation p.D692N 0.15 possibly_damaging(0.759) TCGA-60-2698-01 6 64401664 64401664 C T PHF3 Missense_Mutation p.H743Y 0.09 deleterious(0) probably_damaging(1) TCGA-60-2698-01 6 64401686 64401686 G T PHF3 Missense_Mutation p.S750I 0.12 deleterious(0) probably_damaging(0.999) TCGA-60-2698-01 6 64408361 64408361 G T PHF3 Missense_Mutation p.V950L 0.07 tolerated(0.18) benign(0.069) TCGA-60-2698-01 6 70071177 70071177 G T BAI3 Nonsense_Mutation p.E1338* 0.14 TCGA-60-2698-01 6 7247378 7247378 G T RREB1 Missense_Mutation p.R1565S 0.43 deleterious(0) probably_damaging(0.986) TCGA-60-2698-01 6 75814930 75814930 C A COL12A1 Missense_Mutation p.G2753C 0.15 probably_damaging(1) TCGA-60-2698-01 6 76715065 76715065 C T IMPG1 Silent p.L358L 0.13 TCGA-60-2698-01 6 76715170 76715170 C T IMPG1 Silent p.L323L 0.05 TCGA-60-2698-01 6 83847593 83847593 G C DOPEY1 Missense_Mutation p.E1278Q 0.12 tolerated_low_confidence(0.1) possibly_damaging(0.529) TCGA-60-2698-01 6 84233922 84233922 C G PRSS35 Silent p.V254V 0.11 TCGA-60-2698-01 6 88240595 88240595 G C RARS2 Missense_Mutation p.F226L 0.06 deleterious(0.01) possibly_damaging(0.773) TCGA-60-2698-01 6 97246936 97246936 G A GPR63 Silent p.S224S 0.14 TCGA-60-2698-01 7 100606800 100606800 G A MUC3A Silent p.L630L 0.43 TCGA-60-2698-01 7 100839205 100839205 C T MOGAT3 3'UTR 0.22 TCGA-60-2698-01 7 102953371 102953371 C G PMPCB 3'UTR 0.16 TCGA-60-2698-01 7 1040111 1040111 C A C7orf50 Missense_Mutation p.D134Y 0.34 deleterious(0) benign(0.292) TCGA-60-2698-01 7 104752711 104752711 C T KMT2E Missense_Mutation p.A1503V 0.13 tolerated_low_confidence(0.11) possibly_damaging(0.483) TCGA-60-2698-01 7 106513217 106513217 A T PIK3CG Missense_Mutation p.R707S 0.32 tolerated(0.13) benign(0.098) TCGA-60-2698-01 7 113519081 113519081 C G PPP1R3A Missense_Mutation p.R689T 0.25 tolerated(0.06) benign(0.103) TCGA-60-2698-01 7 11485806 11485806 C A THSD7A Missense_Mutation p.L982F 0.05 tolerated(0.7) benign(0.27) TCGA-60-2698-01 7 117003719 117003719 C T ASZ1 Silent p.R453R 0.31 TCGA-60-2698-01 7 121652898 121652898 T C PTPRZ1 Silent p.S1266S 0.20 TCGA-60-2698-01 7 121756770 121756770 G C AASS Missense_Mutation p.L271V 0.15 deleterious(0.03) probably_damaging(0.998) TCGA-60-2698-01 7 122765725 122765725 G A SLC13A1 Missense_Mutation p.P380S 0.16 tolerated(0.36) benign(0.014) TCGA-60-2698-01 7 127254951 127254951 G T PAX4 Missense_Mutation p.Q107K 0.22 tolerated(0.23) benign(0.046) TCGA-60-2698-01 7 132470294 132470294 C G CHCHD3 3'UTR 0.07 TCGA-60-2698-01 7 133622811 133622811 C T EXOC4 Missense_Mutation p.S732F 0.14 deleterious(0.04) possibly_damaging(0.526) TCGA-60-2698-01 7 133812168 133812168 C A LRGUK Silent p.L16L 0.19 TCGA-60-2698-01 7 134221806 134221806 G C AKR1B10 Missense_Mutation p.E186Q 0.35 deleterious(0.01) probably_damaging(1) TCGA-60-2698-01 7 134225860 134225860 G T AKR1B10 3'UTR 0.34 TCGA-60-2698-01 7 138447711 138447711 C G ATP6V0A4 Missense_Mutation p.L117F 0.19 deleterious(0) probably_damaging(0.943) TCGA-60-2698-01 7 141740571 141740571 G T MGAM Missense_Mutation p.G808V 0.37 tolerated(0.47) benign(0.121) TCGA-60-2698-01 7 143000960 143000960 G T CASP2 Nonsense_Mutation p.E351* 0.34 TCGA-60-2698-01 7 146805423 146805423 G A CNTNAP2 Silent p.L245L 0.13 TCGA-60-2698-01 7 149418625 149418625 C T KRBA1 Silent p.I155I 0.24 TCGA-60-2698-01 7 149467534 149467534 C G ZNF467 Missense_Mutation p.C49S 0.04 tolerated(0.15) benign(0.003) TCGA-60-2698-01 7 150217087 150217087 C T GIMAP7 Silent p.L9L 0.32 TCGA-60-2698-01 7 151921142 151921142 T C KMT2C Missense_Mutation p.Y1094C 0.28 probably_damaging(0.999) TCGA-60-2698-01 7 154379763 154379763 G T DPP6 Intron 0.08 TCGA-60-2698-01 7 157396756 157396756 G A PTPRN2 Missense_Mutation p.R786W 0.36 deleterious(0) probably_damaging(1) TCGA-60-2698-01 7 157985113 157985113 C T PTPRN2 Missense_Mutation p.R152Q 0.38 tolerated(1) benign(0.001) TCGA-60-2698-01 7 23163419 23163419 C T KLHL7 Silent p.L48L 0.06 TCGA-60-2698-01 7 2472883 2472883 G A CHST12 Silent p.P203P 0.34 TCGA-60-2698-01 7 26411513 26411513 A T SNX10 Missense_Mutation p.E128D 0.51 tolerated(0.14) benign(0.142) TCGA-60-2698-01 7 27148056 27148056 G A HOXA3 Silent p.P270P 0.49 TCGA-60-2698-01 7 2771177 2771177 T G GNA12 Missense_Mutation p.M262L 0.26 tolerated(0.59) benign(0.028) TCGA-60-2698-01 7 29407588 29407588 C G CHN2 Missense_Mutation p.I43M 0.08 deleterious(0.04) benign(0.006) TCGA-60-2698-01 7 30890105 30890105 G A FAM188B Missense_Mutation p.C494Y 0.11 deleterious(0) probably_damaging(0.995) TCGA-60-2698-01 7 34125511 34125511 G C BMPER Missense_Mutation p.D518H 0.10 tolerated(0.09) benign(0.237) TCGA-60-2698-01 7 40102671 40102671 C G CDK13 Missense_Mutation p.Q918E 0.42 tolerated(0.2) possibly_damaging(0.479) TCGA-60-2698-01 7 40134200 40134200 C T CDK13 Missense_Mutation p.S1387F 0.42 deleterious_low_confidence(0) possibly_damaging(0.836) TCGA-60-2698-01 7 45018652 45018652 C G MYO1G 5'UTR 0.82 TCGA-60-2698-01 7 47840425 47840425 A C PKD1L1 Missense_Mutation p.L2672R 0.13 tolerated(0.05) possibly_damaging(0.819) TCGA-60-2698-01 7 4815329 4815329 T G AP5Z1 5'UTR 0.21 TCGA-60-2698-01 7 55220237 55220237 A G EGFR Splice_Site p.X210_splice 0.04 TCGA-60-2698-01 7 57188291 57188291 G T ZNF479 Silent p.A277A 0.21 TCGA-60-2698-01 7 57188292 57188292 G T ZNF479 Missense_Mutation p.A277D 0.21 deleterious(0.01) probably_damaging(0.955) TCGA-60-2698-01 7 590102 590102 G T PRKAR1B Missense_Mutation p.Q371K 0.34 tolerated(0.3) possibly_damaging(0.88) TCGA-60-2698-01 7 63709535 63709535 G C ZNF679 Splice_Site p.X13_splice 0.18 TCGA-60-2698-01 7 63726349 63726349 G C ZNF679 Missense_Mutation p.R113T 0.21 deleterious(0.03) benign(0.115) TCGA-60-2698-01 7 64167219 64167219 G A ZNF107 Silent p.K179K 0.05 TCGA-60-2698-01 7 64453338 64453338 C T ERV3-1 Missense_Mutation p.E23K 0.09 tolerated_low_confidence(0.72) possibly_damaging(0.486) TCGA-60-2698-01 7 66104107 66104107 C T KCTD7 Missense_Mutation p.S253L 0.08 tolerated(0.14) benign(0.025) TCGA-60-2698-01 7 72416716 72416716 G C POM121 Intron 0.13 TCGA-60-2698-01 7 75066877 75066877 C G POM121C Missense_Mutation p.L132F 0.12 deleterious(0.02) benign(0.204) TCGA-60-2698-01 7 75608797 75608797 C G POR Missense_Mutation p.S89C 0.40 deleterious(0) probably_damaging(1) TCGA-60-2698-01 7 76871150 76871150 C G CCDC146 Missense_Mutation p.L128V 0.08 deleterious(0) probably_damaging(0.994) TCGA-60-2698-01 7 77408043 77408043 C T RSBN1L Missense_Mutation p.S700F 0.03 deleterious(0.01) possibly_damaging(0.571) TCGA-60-2698-01 7 80300319 80300319 A C CD36 Missense_Mutation p.D282A 0.40 deleterious(0.02) benign(0.099) TCGA-60-2698-01 7 80387646 80387646 C T SEMA3C Splice_Site p.X548_splice 0.06 TCGA-60-2698-01 7 82453631 82453631 G A PCLO Silent p.S4839S 0.15 TCGA-60-2698-01 7 8475387 8475387 C - NXPH1 Frame_Shift_Del p.V16Sfs*9 0.30 TCGA-60-2698-01 7 86539300 86539300 G A KIAA1324L Silent p.L729L 0.06 TCGA-60-2698-01 7 86990850 86990850 C T CROT Missense_Mutation p.L157F 0.05 deleterious(0.01) probably_damaging(0.965) TCGA-60-2698-01 7 87190643 87190643 C G ABCB1 Missense_Mutation p.E255Q 0.17 deleterious(0.02) possibly_damaging(0.731) TCGA-60-2698-01 7 87195509 87195509 G C ABCB1 Missense_Mutation p.F193L 0.19 tolerated(0.56) benign(0.011) TCGA-60-2698-01 7 87470972 87470972 G C SLC25A40 Missense_Mutation p.L267V 0.15 deleterious(0.01) probably_damaging(0.923) TCGA-60-2698-01 7 88963232 88963232 G C ZNF804B Missense_Mutation p.E312D 0.08 tolerated(0.09) benign(0.363) TCGA-60-2698-01 7 90042442 90042442 C G CLDN12 Missense_Mutation p.S151C 0.05 tolerated(0.09) probably_damaging(0.919) TCGA-60-2698-01 7 91755662 91755662 G C CYP51A1 Silent p.L225L 0.30 TCGA-60-2698-01 7 92735412 92735412 C T SAMD9 5'UTR 0.17 TCGA-60-2698-01 7 92764686 92764686 T A SAMD9L Missense_Mutation p.K200I 0.30 deleterious(0) probably_damaging(1) TCGA-60-2698-01 7 98254457 98254457 C T NPTX2 Silent p.I289I 0.10 TCGA-60-2698-01 7 99250244 99250244 C T CYP3A5 Silent p.V395V 0.24 TCGA-60-2698-01 7 99725743 99725743 C T MBLAC1 Missense_Mutation p.S242L 0.29 tolerated(0.38) benign(0.01) TCGA-60-2698-01 7 99780374 99780374 G A STAG3 Missense_Mutation p.R83Q 0.05 tolerated(0.44) benign(0.002) TCGA-60-2698-01 7 99869507 99869507 A T GATS Missense_Mutation p.S34T 0.31 tolerated(0.45) benign(0) TCGA-60-2698-01 8 110420406 110420406 C A PKHD1L1 Missense_Mutation p.P648T 0.25 deleterious(0) probably_damaging(0.987) TCGA-60-2698-01 8 110576875 110576875 G A EBAG9 3'UTR 0.12 TCGA-60-2698-01 8 113275877 113275877 G T CSMD3 Missense_Mutation p.Q3285K 0.38 deleterious(0.02) probably_damaging(0.932) TCGA-60-2698-01 8 113569139 113569139 C A CSMD3 Nonsense_Mutation p.G1363* 0.24 TCGA-60-2698-01 8 113651071 113651071 C - CSMD3 Frame_Shift_Del p.G1127Afs*10 0.37 TCGA-60-2698-01 8 11616059 11616059 C A GATA4 3'UTR 0.29 TCGA-60-2698-01 8 121322262 121322262 C T COL14A1 Silent p.L1472L 0.29 TCGA-60-2698-01 8 123964707 123964707 C T ZHX2 Silent p.I319I 0.05 TCGA-60-2698-01 8 124359338 124359338 C G ATAD2 Missense_Mutation p.D736H 0.17 tolerated(0.24) benign(0.002) TCGA-60-2698-01 8 124453564 124453564 A G WDYHV1 Missense_Mutation p.N176S 0.33 deleterious(0.04) benign(0.039) TCGA-60-2698-01 8 124818395 124818395 G A FAM91A1 Missense_Mutation p.C653Y 0.04 deleterious(0.05) probably_damaging(0.971) TCGA-60-2698-01 8 124992974 124992974 G A FER1L6 Missense_Mutation p.D445N 0.20 tolerated(0.36) benign(0.125) TCGA-60-2698-01 8 128750739 128750739 C G MYC Silent p.V92V 0.06 TCGA-60-2698-01 8 139164351 139164351 C A FAM135B Missense_Mutation p.K789N 0.32 tolerated(0.49) benign(0.03) TCGA-60-2698-01 8 139165196 139165196 G A FAM135B Nonsense_Mutation p.Q508* 0.06 TCGA-60-2698-01 8 139675958 139675958 T C COL22A1 Missense_Mutation p.K1059R 0.04 unknown(0) TCGA-60-2698-01 8 139890135 139890135 G C COL22A1 Missense_Mutation p.I172M 0.29 unknown(0) TCGA-60-2698-01 8 144620616 144620616 C T ZC3H3 Silent p.R307R 0.04 TCGA-60-2698-01 8 145246714 145246714 C T MROH1 Missense_Mutation p.L271F 0.29 deleterious(0.02) possibly_damaging(0.839) TCGA-60-2698-01 8 146108105 146108105 C T ZNF250 Missense_Mutation p.E160K 0.11 tolerated(0.37) benign(0.002) TCGA-60-2698-01 8 22874894 22874894 G A RHOBTB2 Missense_Mutation p.R721Q 0.20 tolerated(0.11) probably_damaging(0.95) TCGA-60-2698-01 8 24304766 24304766 T G ADAM7 Missense_Mutation p.L75R 0.41 tolerated(0.55) benign(0.302) TCGA-60-2698-01 8 25224446 25224446 G C DOCK5 Missense_Mutation p.E1062Q 0.36 tolerated(0.06) possibly_damaging(0.564) TCGA-60-2698-01 8 2966125 2966125 C G CSMD1 Missense_Mutation p.A2252P 0.13 probably_damaging(1) TCGA-60-2698-01 8 30210498 30210498 G T TUBBP1 RNA 0.42 TCGA-60-2698-01 8 38853039 38853039 C A TM2D2 Intron 0.20 TCGA-60-2698-01 8 401300 401300 C G FBXO25 Missense_Mutation p.I169M 0.22 deleterious(0) benign(0.197) TCGA-60-2698-01 8 4495078 4495078 G A CSMD1 Nonsense_Mutation p.Q30* 0.09 TCGA-60-2698-01 8 52258506 52258506 G T PXDNL Missense_Mutation p.D1301E 0.31 tolerated(0.06) benign(0.38) TCGA-60-2698-01 8 55541405 55541405 C T RP1 Nonsense_Mutation p.Q1655* 0.16 TCGA-60-2698-01 8 62556543 62556543 G A ASPH Nonsense_Mutation p.Q224* 0.29 TCGA-60-2698-01 8 6378765 6378765 G A ANGPT2 Nonsense_Mutation p.Q245* 0.09 TCGA-60-2698-01 8 67547206 67547206 T C VCPIP1 Missense_Mutation p.T1067A 0.26 tolerated_low_confidence(0.72) benign(0.004) TCGA-60-2698-01 8 67590034 67590034 G A C8orf44 Missense_Mutation p.E31K 0.34 tolerated_low_confidence(0.2) benign(0.001) TCGA-60-2698-01 8 77767033 77767033 C T ZFHX4 Silent p.L2626L 0.16 TCGA-60-2698-01 8 82592931 82592931 C G IMPA1 Missense_Mutation p.E110Q 0.04 deleterious(0) probably_damaging(0.996) TCGA-60-2698-01 8 86047240 86047240 G A LRRCC1 Silent p.L709L 0.05 TCGA-60-2698-01 8 94767129 94767129 C A TMEM67 5'UTR 0.26 TCGA-60-2698-01 8 94777642 94777642 G A TMEM67 Missense_Mutation p.R172Q 0.04 deleterious(0.02) benign(0.062) TCGA-60-2698-01 8 95272461 95272461 G A GEM Silent p.L91L 0.23 TCGA-60-2698-01 8 96070259 96070259 G C NDUFAF6 3'UTR 0.33 TCGA-60-2698-01 8 99961158 99961158 C T OSR2 5'UTR 0.18 TCGA-60-2698-01 9 100416152 100416152 G A NCBP1 Missense_Mutation p.E378K 0.08 deleterious(0.03) probably_damaging(0.951) TCGA-60-2698-01 9 101611249 101611249 C T GALNT12 Missense_Mutation p.H541Y 0.18 deleterious(0.05) probably_damaging(0.999) TCGA-60-2698-01 9 101751484 101751484 C T COL15A1 Nonsense_Mutation p.Q250* 0.12 TCGA-60-2698-01 9 101832050 101832050 C T COL15A1 Missense_Mutation p.T1350M 0.24 tolerated(0.37) probably_damaging(0.994) TCGA-60-2698-01 9 107456754 107456754 C A OR13D1 Missense_Mutation p.H18N 0.18 deleterious_low_confidence(0.03) benign(0) TCGA-60-2698-01 9 109687003 109687003 C G ZNF462 Silent p.V270V 0.25 TCGA-60-2698-01 9 112899041 112899041 A T PALM2-AKAP2 Missense_Mutation p.K406M 0.20 deleterious(0) probably_damaging(0.986) TCGA-60-2698-01 9 115336509 115336509 G A KIAA1958 Missense_Mutation p.C50Y 0.23 deleterious(0) possibly_damaging(0.902) TCGA-60-2698-01 9 115336775 115336775 G A KIAA1958 Missense_Mutation p.E139K 0.27 tolerated(0.19) possibly_damaging(0.811) TCGA-60-2698-01 9 115649615 115649615 G C SLC46A2 Missense_Mutation p.S403C 0.26 deleterious(0.03) probably_damaging(0.989) TCGA-60-2698-01 9 123675837 123675837 C A TRAF1 Silent p.G158G 0.09 TCGA-60-2698-01 9 124074660 124074660 G C GSN Missense_Mutation p.R237T 0.11 deleterious(0) possibly_damaging(0.49) TCGA-60-2698-01 9 125391335 125391335 C A OR1B1 Missense_Mutation p.L160F 0.23 deleterious(0.03) possibly_damaging(0.556) TCGA-60-2698-01 9 129455528 129455528 C G LMX1B Missense_Mutation p.R223G 0.18 deleterious(0) possibly_damaging(0.534) TCGA-60-2698-01 9 130100413 130100413 G A GARNL3 Missense_Mutation p.R334K 0.21 tolerated(0.37) benign(0.022) TCGA-60-2698-01 9 131383448 131383448 G A SPTAN1 Silent p.K1915K 0.18 TCGA-60-2698-01 9 131860614 131860614 G A CRAT Silent p.F414F 0.20 TCGA-60-2698-01 9 133760253 133760253 C G ABL1 Nonsense_Mutation p.S878* 0.42 TCGA-60-2698-01 9 134321843 134321843 G C PRRC2B Silent p.L223L 0.12 TCGA-60-2698-01 9 134501478 134501478 C G RAPGEF1 Missense_Mutation p.Q512H 0.09 tolerated(0.53) benign(0.003) TCGA-60-2698-01 9 134814846 134814846 C T MED27 Silent p.V165V 0.05 TCGA-60-2698-01 9 136217331 136217331 C T RPL7A Intron 0.46 TCGA-60-2698-01 9 137967606 137967606 C T OLFM1 Silent p.L18L 0.14 TCGA-60-2698-01 9 139397647 139397647 G A NOTCH1 Silent p.I1718I 0.12 TCGA-60-2698-01 9 140809200 140809200 C T CACNA1B Silent p.I239I 0.13 TCGA-60-2698-01 9 15468837 15468837 C G PSIP1 Missense_Mutation p.R404P 0.39 deleterious(0.02) probably_damaging(0.998) TCGA-60-2698-01 9 20363367 20363367 C T MLLT3 Intron 0.10 TCGA-60-2698-01 9 21077455 21077455 C G IFNB1 Missense_Mutation p.M138I 0.13 tolerated(0.31) benign(0.198) TCGA-60-2698-01 9 21239788 21239788 A T IFNA14 Silent p.P49P 0.40 TCGA-60-2698-01 9 21970910 21970910 C T CDKN2A Missense_Mutation p.G150S 0.32 tolerated_low_confidence(0.16) benign(0.008) TCGA-60-2698-01 9 33886963 33886963 G A UBE2R2 Missense_Mutation p.E88K 0.10 deleterious(0.05) possibly_damaging(0.482) TCGA-60-2698-01 9 5756368 5756368 G A KIAA1432 Missense_Mutation p.D617N 0.38 tolerated(0.3) benign(0.103) TCGA-60-2698-01 9 6331192 6331192 C T TPD52L3 3'Flank 0.32 TCGA-60-2698-01 9 72961531 72961531 C T SMC5 Missense_Mutation p.T845I 0.10 tolerated(0.15) benign(0.055) TCGA-60-2698-01 9 79875048 79875048 G C VPS13A Missense_Mutation p.D779H 0.16 deleterious(0) probably_damaging(0.992) TCGA-60-2698-01 9 79933188 79933188 C A VPS13A Missense_Mutation p.T1665N 0.25 deleterious(0.03) possibly_damaging(0.811) TCGA-60-2698-01 9 86559728 86559728 T A C9orf64 Silent p.L258L 0.19 TCGA-60-2698-01 9 86893114 86893114 A T SLC28A3 3'UTR 0.26 TCGA-60-2698-01 9 90345939 90345939 G A CTSL Missense_Mutation p.G307S 0.09 deleterious(0) probably_damaging(1) TCGA-60-2698-01 9 92220039 92220039 G A GADD45G Translation_Start_Site p.M1? 0.12 deleterious(0) benign(0.15) TCGA-60-2698-01 9 95107999 95107999 T A CENPP Missense_Mutation p.S133T 0.15 tolerated(0.06) benign(0.213) TCGA-60-2698-01 9 97062288 97062288 G A ZNF169 Missense_Mutation p.D150N 0.25 tolerated(0.36) benign(0.089) TCGA-60-2698-01 9 99489180 99489180 A T RP11-535M15.2 RNA 0.21 TCGA-60-2698-01 X 100417910 100417910 C G CENPI Missense_Mutation p.S742C 0.64 tolerated(0.19) possibly_damaging(0.832) TCGA-60-2698-01 X 100617573 100617573 G T BTK Missense_Mutation p.Q166K 0.58 tolerated(0.84) benign(0.001) TCGA-60-2698-01 X 102528982 102528982 C G TCEAL5 Missense_Mutation p.W170C 0.24 deleterious(0.05) probably_damaging(1) TCGA-60-2698-01 X 105450803 105450803 G C MUM1L1 Missense_Mutation p.E460Q 0.51 deleterious(0.04) probably_damaging(0.995) TCGA-60-2698-01 X 107224904 107224904 G T TEX13B Missense_Mutation p.H152N 0.15 deleterious(0.03) benign(0.137) TCGA-60-2698-01 X 110644549 110644549 T A DCX Missense_Mutation p.Y206F 0.59 deleterious(0.02) probably_damaging(0.999) TCGA-60-2698-01 X 117900499 117900499 G C IL13RA1 Missense_Mutation p.E279Q 0.54 tolerated(0.26) possibly_damaging(0.51) TCGA-60-2698-01 X 125685517 125685517 A G DCAF12L1 Missense_Mutation p.Y359H 0.09 tolerated(0.16) benign(0.076) TCGA-60-2698-01 X 129318484 129318484 C A RAB33A Missense_Mutation p.P162T 0.10 tolerated(0.12) probably_damaging(0.996) TCGA-60-2698-01 X 132162317 132162317 A C USP26 5'UTR 0.11 TCGA-60-2698-01 X 142803733 142803733 C A SPANXN2 Silent p.G10G 0.46 TCGA-60-2698-01 X 146353923 146353923 C A MIR510 RNA 0.06 TCGA-60-2698-01 X 149937524 149937524 C A CD99L2 Nonsense_Mutation p.E258* 0.53 TCGA-60-2698-01 X 151870215 151870215 C A MAGEA6 Missense_Mutation p.P302Q 0.58 deleterious(0.01) probably_damaging(0.984) TCGA-60-2698-01 X 151870217 151870217 C A MAGEA6 Missense_Mutation p.L303I 0.58 tolerated(0.39) benign(0.017) TCGA-60-2698-01 X 152936585 152936585 C A PNCK Silent p.L308L 0.08 TCGA-60-2698-01 X 15311360 15311360 A T ASB11 Missense_Mutation p.L151Q 0.20 deleterious(0) probably_damaging(0.988) TCGA-60-2698-01 X 153713988 153713988 C A UBL4A Missense_Mutation p.D122Y 0.05 deleterious(0) probably_damaging(0.94) TCGA-60-2698-01 X 21534642 21534642 G C CNKSR2 Missense_Mutation p.E284Q 0.20 deleterious(0.02) possibly_damaging(0.628) TCGA-60-2698-01 X 23018538 23018538 G C DDX53 Missense_Mutation p.E122Q 0.07 tolerated(0.19) benign(0.058) TCGA-60-2698-01 X 34148575 34148576 TT A FAM47A Frame_Shift_Del p.K607Ifs*41 0.26 TCGA-60-2698-01 X 37526617 37526617 C G LANCL3 Silent p.L326L 0.17 TCGA-60-2698-01 X 38144829 38144829 C A RPGR Missense_Mutation p.W1141C 0.53 unknown(0) TCGA-60-2698-01 X 47426294 47426294 G C ARAF Missense_Mutation p.Q237H 0.20 tolerated(0.19) benign(0.187) TCGA-60-2698-01 X 51644851 51644851 G C MAGED1 Missense_Mutation p.G777A 0.21 tolerated_low_confidence(0.06) possibly_damaging(0.554) TCGA-60-2698-01 X 53584372 53584372 G C HUWE1 Nonsense_Mutation p.S2726* 0.10 TCGA-60-2698-01 X 54952896 54952896 T A TRO Missense_Mutation p.F544Y 0.15 deleterious(0.01) unknown(0) TCGA-60-2698-01 X 55514731 55514731 G T USP51 Silent p.I214I 0.68 TCGA-60-2698-01 X 5821118 5821118 C T NLGN4X Missense_Mutation p.G534D 0.08 deleterious(0) probably_damaging(0.993) TCGA-60-2698-01 X 64137706 64137706 C A ZC4H2 Missense_Mutation p.R211L 0.59 deleterious(0) probably_damaging(0.913) TCGA-60-2698-01 X 69478906 69478906 C G P2RY4 Missense_Mutation p.R190P 0.74 tolerated(0.1) benign(0.049) TCGA-60-2698-01 X 69478907 69478907 G A P2RY4 Missense_Mutation p.R190W 0.76 tolerated(0.06) benign(0.022) TCGA-60-2698-01 X 70472742 70472742 C T ZMYM3 Missense_Mutation p.E122K 0.24 tolerated_low_confidence(0.24) probably_damaging(0.931) TCGA-60-2698-01 X 71351267 71351267 C A RGAG4 Nonsense_Mutation p.E42* 0.45 TCGA-60-2698-01 X 7811692 7811692 C G VCX Missense_Mutation p.Q86E 0.06 tolerated(0.13) unknown(0) TCGA-60-2698-01 X 79282234 79282234 C A TBX22 Missense_Mutation p.P222H 0.43 deleterious(0) probably_damaging(0.999) TCGA-60-2698-01 X 79937529 79937529 G A BRWD3 Missense_Mutation p.H1488Y 0.18 tolerated(1) benign(0) TCGA-60-2698-01 X 83128683 83128683 A G CYLC1 Missense_Mutation p.K323E 0.28 tolerated(0.09) unknown(0) TCGA-60-2698-01 X 86887307 86887307 T G KLHL4 Missense_Mutation p.I474M 0.61 tolerated(0.16) probably_damaging(0.934) TCGA-60-2698-01 X 88009209 88009209 T C CPXCR1 Missense_Mutation p.V265A 0.47 tolerated(0.08) benign(0.013) TCGA-60-2698-01 X 92927281 92927281 C T NAP1L3 Silent p.S341S 0.61 TCGA-60-2703-01 10 102222922 102222922 G A WNT8B 5'UTR 0.06 TCGA-60-2703-01 10 118084520 118084520 T A CCDC172 5'UTR 0.19 TCGA-60-2703-01 10 16882407 16882407 G T CUBN Silent p.V3318V 0.19 TCGA-60-2703-01 10 31809932 31809932 C A ZEB1 Missense_Mutation p.Q558K 0.36 tolerated(0.13) benign(0.043) TCGA-60-2703-01 10 38344617 38344617 G T ZNF33A Missense_Mutation p.W522L 0.06 tolerated(0.47) benign(0) TCGA-60-2703-01 10 58117926 58117926 G T ZWINT 3'UTR 0.18 TCGA-60-2703-01 10 73767203 73767203 G T CHST3 Missense_Mutation p.M138I 0.14 deleterious(0.02) possibly_damaging(0.848) TCGA-60-2703-01 10 90122318 90122318 G A RNLS Missense_Mutation p.R231C 0.07 deleterious(0) probably_damaging(1) TCGA-60-2703-01 10 90427114 90427114 G T LIPF Missense_Mutation p.L30F 0.12 tolerated(0.79) benign(0.005) TCGA-60-2703-01 10 98138748 98138748 C G TLL2 Missense_Mutation p.E766Q 0.07 deleterious(0.02) possibly_damaging(0.761) TCGA-60-2703-01 11 107518266 107518266 C A ELMOD1 Missense_Mutation p.Q165K 0.16 deleterious(0) probably_damaging(0.994) TCGA-60-2703-01 11 122945467 122945467 A T CLMP Missense_Mutation p.L255Q 0.07 deleterious(0.01) possibly_damaging(0.534) TCGA-60-2703-01 11 124135467 124135467 A T OR8G5 Missense_Mutation p.I249F 0.08 deleterious(0) probably_damaging(0.992) TCGA-60-2703-01 11 125875762 125875762 G C CDON Missense_Mutation p.I581M 0.07 deleterious(0) probably_damaging(0.976) TCGA-60-2703-01 11 130066561 130066561 C A ST14 Missense_Mutation p.F440L 0.16 deleterious(0) probably_damaging(1) TCGA-60-2703-01 11 21594896 21594896 C T NELL1 Missense_Mutation p.R775W 0.11 deleterious(0) possibly_damaging(0.901) TCGA-60-2703-01 11 30033032 30033032 G T KCNA4 Silent p.L398L 0.15 TCGA-60-2703-01 11 33566712 33566712 T A KIAA1549L Missense_Mutation p.L761Q 0.11 deleterious_low_confidence(0.01) benign(0.05) TCGA-60-2703-01 11 36614332 36614332 C T RAG2 Missense_Mutation p.E463K 0.10 deleterious(0) probably_damaging(0.982) TCGA-60-2703-01 11 55136226 55136226 C A OR4A15 Silent p.P289P 0.10 TCGA-60-2703-01 11 5536591 5536591 C T UBQLNL Missense_Mutation p.A361T 0.11 tolerated(0.17) benign(0.02) TCGA-60-2703-01 11 55578970 55578970 G C OR5L1 Missense_Mutation p.A10P 0.17 deleterious(0.01) benign(0.16) TCGA-60-2703-01 11 56468757 56468757 G T OR9G1 Missense_Mutation p.E298D 0.11 tolerated(0.51) benign(0.005) TCGA-60-2703-01 11 58170649 58170649 G C OR5B3 Missense_Mutation p.I78M 0.16 deleterious_low_confidence(0.05) benign(0) TCGA-60-2703-01 11 58207500 58207500 C T OR5B12 Missense_Mutation p.G42E 0.15 deleterious_low_confidence(0.01) probably_damaging(0.981) TCGA-60-2703-01 11 59132566 59132566 C A OR5AN1 Missense_Mutation p.A212D 0.10 deleterious(0.01) possibly_damaging(0.595) TCGA-60-2703-01 11 59132567 59132567 C T OR5AN1 Silent p.A212A 0.10 TCGA-60-2703-01 11 60265065 60265065 G T MS4A12 Missense_Mutation p.G92W 0.31 deleterious(0) probably_damaging(1) TCGA-60-2703-01 11 65401610 65401610 A G PCNXL3 Missense_Mutation p.Y1495C 0.17 deleterious(0) probably_damaging(0.99) TCGA-60-2703-01 11 73941961 73941961 A G PPME1 Silent p.T186T 0.16 TCGA-60-2703-01 11 74053526 74053526 T A PGM2L1 Missense_Mutation p.S538C 0.22 deleterious(0) probably_damaging(0.961) TCGA-60-2703-01 11 8115651 8115651 A C TUB Silent p.P159P 0.08 TCGA-60-2703-01 11 86519858 86519858 G T PRSS23 3'UTR 0.16 TCGA-60-2703-01 11 93913282 93913282 A T PANX1 Missense_Mutation p.I354F 0.08 deleterious(0) possibly_damaging(0.558) TCGA-60-2703-01 12 131488753 131488753 G T GPR133 Silent p.L389L 0.21 TCGA-60-2703-01 12 21327596 21327596 G T SLCO1B1 Missense_Mutation p.M104I 0.17 deleterious(0.02) probably_damaging(1) TCGA-60-2703-01 12 21350059 21350059 G A SLCO1B1 Missense_Mutation p.D303N 0.08 tolerated(0.15) possibly_damaging(0.568) TCGA-60-2703-01 12 29670479 29670479 C T TMTC1 Missense_Mutation p.E684K 0.13 tolerated(0.2) benign(0.199) TCGA-60-2703-01 12 31577538 31577538 C G DENND5B Missense_Mutation p.E774D 0.30 deleterious(0) probably_damaging(0.986) TCGA-60-2703-01 12 44338012 44338012 G T TMEM117 Splice_Site p.X93_splice 0.13 TCGA-60-2703-01 12 49420963 49420963 G - KMT2D Frame_Shift_Del p.P4929Lfs*66 0.22 TCGA-60-2703-01 12 54333196 54333196 C T HOXC13 Missense_Mutation p.A169V 0.13 deleterious(0.02) benign(0.394) TCGA-60-2703-01 12 7640038 7640038 T A CD163 Missense_Mutation p.E656V 0.36 deleterious(0) probably_damaging(1) TCGA-60-2703-01 12 80770909 80770909 G T OTOGL Missense_Mutation p.R2254L 0.24 deleterious(0) benign(0.162) TCGA-60-2703-01 12 8926221 8926222 - C RIMKLB Frame_Shift_Ins p.A337Sfs*6 0.26 TCGA-60-2703-01 12 97313838 97313838 G T NEDD1 Nonsense_Mutation p.E149* 0.12 TCGA-60-2703-01 13 109518548 109518548 G A MYO16 Silent p.L439L 0.26 TCGA-60-2703-01 13 28626806 28626806 G T FLT3 Missense_Mutation p.L164M 0.11 tolerated(0.22) benign(0.02) TCGA-60-2703-01 13 31232770 31232770 A T USPL1 Missense_Mutation p.E852D 0.25 tolerated(0.37) benign(0.095) TCGA-60-2703-01 13 37453680 37453680 C A SMAD9 Missense_Mutation p.K49N 0.20 tolerated(0.08) probably_damaging(0.99) TCGA-60-2703-01 13 38137434 38137434 G C POSTN 3'UTR 0.14 TCGA-60-2703-01 13 41515238 41515238 C A ELF1 Missense_Mutation p.V359L 0.17 tolerated(0.66) benign(0) TCGA-60-2703-01 13 44455163 44455163 G C LACC1 Missense_Mutation p.L14F 0.16 tolerated_low_confidence(0.16) benign(0.01) TCGA-60-2703-01 13 52971492 52971492 C T THSD1 Missense_Mutation p.R299K 0.18 tolerated(0.63) benign(0.005) TCGA-60-2703-01 13 78192195 78192195 G T SCEL Missense_Mutation p.R543L 0.11 deleterious(0) probably_damaging(0.915) TCGA-60-2703-01 13 99340513 99340513 C A SLC15A1 Missense_Mutation p.V558F 0.24 deleterious(0.01) benign(0.003) TCGA-60-2703-01 14 21623382 21623382 G T OR5AU1 Missense_Mutation p.S268Y 0.12 deleterious(0) possibly_damaging(0.889) TCGA-60-2703-01 14 22592032 22592032 T C TRAV26-1 Silent p.C39C 0.06 TCGA-60-2703-01 14 23451491 23451492 - C AJUBA 5'UTR 0.12 TCGA-60-2703-01 14 23895186 23895186 C G MYH7 Missense_Mutation p.D717H 0.12 deleterious(0.01) probably_damaging(0.985) TCGA-60-2703-01 14 42357151 42357151 C G LRFN5 Missense_Mutation p.I441M 0.33 deleterious(0.03) possibly_damaging(0.635) TCGA-60-2703-01 14 45370094 45370094 G C C14orf28 Missense_Mutation p.E152D 0.10 tolerated_low_confidence(0.08) probably_damaging(0.953) TCGA-60-2703-01 14 47566254 47566254 C A MDGA2 Missense_Mutation p.C333F 0.07 deleterious(0) probably_damaging(0.999) TCGA-60-2703-01 14 64194263 64194263 A C SGPP1 Missense_Mutation p.F134V 0.06 deleterious(0.01) benign(0.097) TCGA-60-2703-01 14 65270332 65270332 C A SPTB Missense_Mutation p.R156L 0.11 deleterious(0) probably_damaging(1) TCGA-60-2703-01 14 74206692 74206692 G T ELMSAN1 Missense_Mutation p.P7H 0.07 deleterious(0.01) possibly_damaging(0.625) TCGA-60-2703-01 14 74206734 74206734 C A ELMSAN1 5'UTR 0.13 TCGA-60-2703-01 14 81610056 81610056 C A TSHR Missense_Mutation p.L552I 0.14 tolerated(0.43) probably_damaging(0.994) TCGA-60-2703-01 14 93673401 93673401 A T C14orf142 5'UTR 0.08 TCGA-60-2703-01 14 95108086 95108086 C T SERPINA13P RNA 0.08 TCGA-60-2703-01 15 44913978 44913978 G C SPG11 Missense_Mutation p.L867V 0.16 deleterious(0) possibly_damaging(0.801) TCGA-60-2703-01 15 50901851 50901851 G A TRPM7 Missense_Mutation p.S836L 0.21 tolerated(0.28) benign(0.017) TCGA-60-2703-01 15 76301544 76301544 C A NRG4 Missense_Mutation p.C34F 0.11 deleterious(0) probably_damaging(0.992) TCGA-60-2703-01 15 83451725 83451725 A G FSD2 Missense_Mutation p.L263S 0.15 deleterious(0) probably_damaging(0.964) TCGA-60-2703-01 15 87531254 87531254 G C AGBL1 Missense_Mutation p.W1040C 0.15 deleterious_low_confidence(0.05) unknown(0) TCGA-60-2703-01 16 20432662 20432662 G A ACSM5 Missense_Mutation p.A236T 0.13 tolerated(0.39) benign(0.008) TCGA-60-2703-01 16 20487009 20487009 G T ACSM2A Missense_Mutation p.G338W 0.10 deleterious(0) probably_damaging(1) TCGA-60-2703-01 16 2147768 2147768 C A PKD1 Missense_Mutation p.G3394V 0.16 benign(0.266) TCGA-60-2703-01 16 28893790 28893790 G A ATP2A1 Missense_Mutation p.A115T 0.16 deleterious(0) benign(0.245) TCGA-60-2703-01 16 30096390 30096390 C G PPP4C 3'UTR 0.07 TCGA-60-2703-01 16 31384634 31384634 G A ITGAX Missense_Mutation p.G811R 0.07 deleterious(0) probably_damaging(1) TCGA-60-2703-01 16 31925966 31925966 G T ZNF267 Missense_Mutation p.K132N 0.12 tolerated(0.13) benign(0.072) TCGA-60-2703-01 16 3333972 3333972 G T ZNF263 Missense_Mutation p.A52S 0.14 tolerated(0.35) probably_damaging(0.996) TCGA-60-2703-01 16 47001470 47001470 T A DNAJA2 Missense_Mutation p.M178L 0.11 tolerated(0.07) benign(0.015) TCGA-60-2703-01 16 47001471 47001471 C A DNAJA2 Silent p.G177G 0.12 TCGA-60-2703-01 16 53243607 53243607 A G CHD9 Missense_Mutation p.T556A 0.18 benign(0.01) TCGA-60-2703-01 16 57687951 57687951 T - GPR56 Frame_Shift_Del p.M225Rfs*98 0.12 TCGA-60-2703-01 16 77465493 77465493 G T ADAMTS18 Missense_Mutation p.T65K 0.21 tolerated(0.06) possibly_damaging(0.644) TCGA-60-2703-01 16 84213056 84213056 G T TAF1C Missense_Mutation p.P701T 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-60-2703-01 17 10307713 10307713 C A MYH8 Missense_Mutation p.K874N 0.27 deleterious(0.01) possibly_damaging(0.786) TCGA-60-2703-01 17 11881920 11881920 C T ZNF18 Missense_Mutation p.G335E 0.08 tolerated(0.17) benign(0.055) TCGA-60-2703-01 17 18167898 18167898 G A MIEF2 Silent p.E406E 0.04 TCGA-60-2703-01 17 30538225 30538225 A G RHOT1 Silent p.V642V 0.13 TCGA-60-2703-01 17 34073067 34073067 G T GAS2L2 Missense_Mutation p.F483L 0.08 tolerated(0.66) benign(0.001) TCGA-60-2703-01 17 35581945 35581945 A G ACACA Missense_Mutation p.Y1148H 0.20 deleterious(0.01) possibly_damaging(0.865) TCGA-60-2703-01 17 40124011 40124011 G A CNP Missense_Mutation p.G260R 0.07 deleterious(0) probably_damaging(0.999) TCGA-60-2703-01 17 41008455 41008455 G T AOC3 Missense_Mutation p.G727V 0.16 tolerated(0.16) benign(0.147) TCGA-60-2703-01 17 42882042 42882042 T C GJC1 Missense_Mutation p.T382A 0.09 tolerated(0.51) benign(0) TCGA-60-2703-01 17 61972405 61972405 C G CSH1 Missense_Mutation p.V211L 0.18 tolerated(0.22) benign(0.036) TCGA-60-2703-01 17 67124794 67124794 C A ABCA6 Missense_Mutation p.C362F 0.13 tolerated(0.96) benign(0.006) TCGA-60-2703-01 17 68128282 68128282 A G KCNJ16 Silent p.P18P 0.23 TCGA-60-2703-01 17 7319070 7319070 G A NLGN2 Silent p.V426V 0.22 TCGA-60-2703-01 17 7339866 7339866 G C TMEM102 Missense_Mutation p.V190L 0.11 tolerated_low_confidence(0.2) benign(0.003) TCGA-60-2703-01 17 7577580 7577580 T C TP53 Missense_Mutation p.Y234C 0.17 deleterious(0) probably_damaging(0.992) TCGA-60-2703-01 17 8141887 8141887 C A CTC1 Silent p.S86S 0.17 TCGA-60-2703-01 18 28986337 28986337 G T DSG4 Splice_Site p.X645_splice 0.17 TCGA-60-2703-01 18 31325291 31325291 C T ASXL3 Missense_Mutation p.P1827S 0.06 probably_damaging(0.999) TCGA-60-2703-01 18 47527648 47527648 G A MYO5B Silent p.L197L 0.09 TCGA-60-2703-01 18 67563190 67563190 C A CD226 Missense_Mutation p.W158C 0.15 tolerated(0.12) probably_damaging(0.935) TCGA-60-2703-01 18 70526104 70526104 C A NETO1 Missense_Mutation p.E142D 0.22 deleterious(0.02) probably_damaging(0.996) TCGA-60-2703-01 18 72345231 72345231 C T ZNF407 Silent p.H752H 0.12 TCGA-60-2703-01 18 724573 724573 G A YES1 Nonsense_Mutation p.Q495* 0.12 TCGA-60-2703-01 18 76752657 76752657 C T SALL3 Silent p.L222L 0.24 TCGA-60-2703-01 19 19136746 19136746 T C SUGP2 Silent p.K137K 0.19 TCGA-60-2703-01 19 30193648 30193648 G A C19orf12 Silent p.L144L 0.19 TCGA-60-2703-01 19 36003971 36003971 G T DMKN Missense_Mutation p.P136H 0.16 deleterious(0) probably_damaging(0.998) TCGA-60-2703-01 19 36003972 36003972 G T DMKN Missense_Mutation p.P136T 0.16 deleterious(0) probably_damaging(0.996) TCGA-60-2703-01 19 39867356 39867356 A T SAMD4B Missense_Mutation p.K343N 0.14 deleterious(0) probably_damaging(0.998) TCGA-60-2703-01 19 39966907 39966907 C T SUPT5H Silent p.I1044I 0.14 TCGA-60-2703-01 19 40009582 40009582 G T SELV Missense_Mutation p.V310L 0.04 deleterious(0) possibly_damaging(0.739) TCGA-60-2703-01 19 40553293 40553293 C T ZNF780B Missense_Mutation p.R74K 0.12 tolerated(0.94) benign(0.067) TCGA-60-2703-01 19 42092918 42092918 C T CEACAM21 3'Flank 0.07 TCGA-60-2703-01 19 46117959 46117959 C A EML2 Splice_Site p.X734_splice 0.21 TCGA-60-2703-01 19 46216801 46216801 C A FBXO46 5'UTR 0.18 TCGA-60-2703-01 19 46811529 46811529 G A HIF3A Missense_Mutation p.E139K 0.17 deleterious(0) possibly_damaging(0.626) TCGA-60-2703-01 19 47234071 47234071 G C STRN4 Missense_Mutation p.P266R 0.10 tolerated(0.25) benign(0.153) TCGA-60-2703-01 19 47236402 47236402 C T STRN4 Missense_Mutation p.G211R 0.08 deleterious(0.01) possibly_damaging(0.742) TCGA-60-2703-01 19 52001519 52001519 G T SIGLEC12 Silent p.G386G 0.24 TCGA-60-2703-01 19 54177454 54177454 C A MIR498 RNA 0.17 TCGA-60-2703-01 19 54297290 54297290 C G NLRP12 3'UTR 0.12 TCGA-60-2703-01 19 54621986 54621986 A G PRPF31 Missense_Mutation p.I71V 0.12 tolerated(0.37) benign(0.001) TCGA-60-2703-01 19 54634738 54634738 G T PRPF31 Missense_Mutation p.G459C 0.14 deleterious(0) probably_damaging(1) TCGA-60-2703-01 19 54745904 54745904 G T LILRA6 Missense_Mutation p.T118K 0.04 deleterious(0.01) probably_damaging(0.995) TCGA-60-2703-01 19 57647166 57647166 G T ZIM3 Nonsense_Mutation p.S180* 0.12 TCGA-60-2703-01 19 59028563 59028563 G T ZBTB45 Missense_Mutation p.R160S 0.22 tolerated(0.14) probably_damaging(0.987) TCGA-60-2703-01 1 109777943 109777943 C A SARS Missense_Mutation p.P287T 0.17 tolerated(0.14) benign(0.05) TCGA-60-2703-01 1 111863007 111863007 C A CHIA Nonsense_Mutation p.C450* 0.10 TCGA-60-2703-01 1 12954907 12954907 G A PRAMEF10 Missense_Mutation p.P126S 0.18 tolerated(0.46) benign(0.168) TCGA-60-2703-01 1 145075048 145075048 C A PDE4DIP Silent p.L82L 0.08 TCGA-60-2703-01 1 145075049 145075049 A G PDE4DIP Missense_Mutation p.L82P 0.08 tolerated_low_confidence(0.07) benign(0.064) TCGA-60-2703-01 1 152280830 152280830 C T FLG Missense_Mutation p.D2178N 0.08 possibly_damaging(0.539) TCGA-60-2703-01 1 155292449 155292449 T C RUSC1 Silent p.I295I 0.17 TCGA-60-2703-01 1 156811473 156811473 T A INSRR Missense_Mutation p.T1171S 0.20 tolerated(0.46) benign(0.053) TCGA-60-2703-01 1 156812196 156812196 C A INSRR Missense_Mutation p.E1077D 0.06 tolerated(1) benign(0.004) TCGA-60-2703-01 1 157514718 157514718 A G FCRL5 Silent p.P154P 0.06 TCGA-60-2703-01 1 157803299 157803299 G A CD5L Missense_Mutation p.P241L 0.06 deleterious(0.01) benign(0.303) TCGA-60-2703-01 1 158576761 158576761 T C OR10Z1 Missense_Mutation p.F178S 0.22 deleterious(0) probably_damaging(0.999) TCGA-60-2703-01 1 159558052 159558052 A T APCS Missense_Mutation p.R76W 0.17 deleterious(0) probably_damaging(0.931) TCGA-60-2703-01 1 169951966 169951966 C T KIFAP3 Missense_Mutation p.E517K 0.13 tolerated(0.38) possibly_damaging(0.524) TCGA-60-2703-01 1 173912688 173912688 T A RC3H1 Silent p.P1009P 0.13 TCGA-60-2703-01 1 180063224 180063224 T C CEP350 Missense_Mutation p.S2662P 0.12 benign(0.003) TCGA-60-2703-01 1 197890497 197890498 GC - LHX9 Frame_Shift_Del p.A149Pfs*98 0.20 TCGA-60-2703-01 1 200586820 200586820 G A KIF14 Silent p.N344N 0.09 TCGA-60-2703-01 1 214556788 214556788 G C PTPN14 Missense_Mutation p.L804V 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-60-2703-01 1 217622614 217622614 G A GPATCH2 Missense_Mutation p.P448L 0.13 deleterious(0) probably_damaging(0.998) TCGA-60-2703-01 1 220809360 220809360 A G MARK1 Missense_Mutation p.I488V 0.14 tolerated(0.6) benign(0.001) TCGA-60-2703-01 1 229730714 229730714 C T TAF5L Missense_Mutation p.R367K 0.14 deleterious(0.03) probably_damaging(0.997) TCGA-60-2703-01 1 233482292 233482292 A T MLK4 Missense_Mutation p.T304S 0.10 deleterious(0) benign(0.027) TCGA-60-2703-01 1 237777655 237777655 A T RYR2 Missense_Mutation p.N1743Y 0.18 benign(0.004) TCGA-60-2703-01 1 241886720 241886720 C A WDR64 Silent p.V382V 0.24 TCGA-60-2703-01 1 247737770 247737770 C A GCSAML 3'UTR 0.30 TCGA-60-2703-01 1 248004716 248004716 C T OR11L1 Silent p.L161L 0.13 TCGA-60-2703-01 1 248202264 248202264 G T OR2L2 Missense_Mutation p.G232V 0.09 deleterious(0) probably_damaging(0.946) TCGA-60-2703-01 1 248366631 248366631 G T OR2M3 Missense_Mutation p.G88C 0.29 deleterious(0.01) probably_damaging(0.995) TCGA-60-2703-01 1 248616923 248616923 G T OR2T2 Silent p.V275V 0.09 TCGA-60-2703-01 1 37291401 37291401 C A GRIK3 Silent p.L519L 0.09 TCGA-60-2703-01 1 41236462 41236462 C T NFYC Missense_Mutation p.P343S 0.19 tolerated_low_confidence(0.36) benign(0.001) TCGA-60-2703-01 1 46096227 46096227 G A GPBP1L1 Missense_Mutation p.H366Y 0.07 tolerated(0.4) benign(0.024) TCGA-60-2703-01 1 53255704 53255704 C T ZYG11B Silent p.C433C 0.09 TCGA-60-2703-01 1 70446082 70446082 A G LRRC7 Missense_Mutation p.I206M 0.10 deleterious(0.04) possibly_damaging(0.459) TCGA-60-2703-01 1 75037098 75037098 G C C1orf173 Silent p.G1432G 0.13 TCGA-60-2703-01 1 75606775 75606775 A C LHX8 Missense_Mutation p.K125Q 0.14 deleterious(0) probably_damaging(0.993) TCGA-60-2703-01 1 92446498 92446498 G C BRDT Missense_Mutation p.D505H 0.12 deleterious(0.03) benign(0.031) TCGA-60-2703-01 1 98015280 98015280 T C DPYD Missense_Mutation p.I454V 0.17 tolerated(0.71) benign(0.001) TCGA-60-2703-01 20 13539730 13539730 C G TASP1 Missense_Mutation p.K200N 0.26 deleterious(0) possibly_damaging(0.807) TCGA-60-2703-01 20 30674489 30674489 G A HCK Silent p.S298S 0.20 TCGA-60-2703-01 20 30789983 30789983 G A PLAGL2 5'UTR 0.35 TCGA-60-2703-01 20 31424488 31424488 G C MAPRE1 Missense_Mutation p.E106Q 0.29 deleterious(0) probably_damaging(0.985) TCGA-60-2703-01 20 36024575 36024575 C T SRC Silent p.C188C 0.13 TCGA-60-2703-01 20 3682108 3682108 C A SIGLEC1 Missense_Mutation p.G470V 0.09 deleterious(0.03) benign(0.232) TCGA-60-2703-01 20 4164241 4164241 C T SMOX Silent p.S490S 0.13 TCGA-60-2703-01 20 44683580 44683580 C A SLC12A5 Missense_Mutation p.T925N 0.25 deleterious(0) possibly_damaging(0.835) TCGA-60-2703-01 20 4776546 4776546 G T RASSF2 Missense_Mutation p.L68M 0.19 deleterious(0) probably_damaging(0.969) TCGA-60-2703-01 20 4776547 4776547 G T RASSF2 Silent p.R67R 0.19 TCGA-60-2703-01 20 62660797 62660797 C T PRPF6 Silent p.A833A 0.29 TCGA-60-2703-01 20 62729477 62729477 G A OPRL1 Missense_Mutation p.A186T 0.09 deleterious(0.04) benign(0.012) TCGA-60-2703-01 21 33370902 33370902 C T HUNK Missense_Mutation p.S517F 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-60-2703-01 21 45960077 45960077 G C KRTAP10-1 5'UTR 0.19 TCGA-60-2703-01 22 16287480 16287480 C A POTEH Missense_Mutation p.G136C 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.897) TCGA-60-2703-01 22 17072291 17072291 C T CCT8L2 Missense_Mutation p.G384R 0.27 deleterious(0.04) probably_damaging(0.967) TCGA-60-2703-01 22 19381980 19381980 T - HIRA Frame_Shift_Del p.Y236Sfs*8 0.20 TCGA-60-2703-01 22 31484511 31484511 G T SMTN Silent p.R71R 0.08 TCGA-60-2703-01 22 32880026 32880026 A G FBXO7 Missense_Mutation p.Y187C 0.06 deleterious(0) possibly_damaging(0.834) TCGA-60-2703-01 22 36696935 36696935 G A MYH9 Silent p.L934L 0.24 TCGA-60-2703-01 22 43558996 43558996 G A TSPO Silent p.%3D 0.43 TCGA-60-2703-01 22 46664478 46664478 C T TTC38 Missense_Mutation p.T34M 0.25 tolerated(0.05) possibly_damaging(0.633) TCGA-60-2703-01 22 50170769 50170769 C A BRD1 Missense_Mutation p.V881L 0.22 tolerated(0.25) benign(0.062) TCGA-60-2703-01 2 100058846 100058846 G C REV1 Missense_Mutation p.P146A 0.06 tolerated(0.19) benign(0.002) TCGA-60-2703-01 2 100623118 100623118 C G AFF3 Missense_Mutation p.K308N 0.05 deleterious(0) probably_damaging(0.998) TCGA-60-2703-01 2 101624646 101624646 G C TBC1D8 Silent p.V1020V 0.16 TCGA-60-2703-01 2 10188367 10188367 T - KLF11 Frame_Shift_Del p.L303* 0.19 TCGA-60-2703-01 2 103148833 103148833 G T SLC9A4 Missense_Mutation p.A695S 0.20 tolerated(0.75) benign(0.004) TCGA-60-2703-01 2 107459573 107459573 C G ST6GAL2 Missense_Mutation p.Q287H 0.17 probably_damaging(0.93) TCGA-60-2703-01 2 112779153 112779153 G T MERTK Missense_Mutation p.D782Y 0.19 deleterious(0) probably_damaging(1) TCGA-60-2703-01 2 112839079 112839079 C T TMEM87B Silent p.S274S 0.15 TCGA-60-2703-01 2 11810009 11810009 G A NTSR2 Silent p.L83L 0.14 TCGA-60-2703-01 2 128927883 128927883 G T UGGT1 Missense_Mutation p.K981N 0.12 tolerated(0.49) benign(0.012) TCGA-60-2703-01 2 132010550 132010550 C A POTEE Missense_Mutation p.F552L 0.15 tolerated_low_confidence(1) benign(0.001) TCGA-60-2703-01 2 145154139 145154139 T G ZEB2 Silent p.A969A 0.16 TCGA-60-2703-01 2 152311514 152311514 T C RIF1 Missense_Mutation p.L817P 0.16 deleterious(0) probably_damaging(0.95) TCGA-60-2703-01 2 152659794 152659794 C T ARL5A Missense_Mutation p.R179K 0.19 tolerated(0.22) possibly_damaging(0.899) TCGA-60-2703-01 2 1648400 1648400 C G PXDN Missense_Mutation p.D1245H 0.12 deleterious(0.03) probably_damaging(0.976) TCGA-60-2703-01 2 165947050 165947050 T A SCN3A Silent p.R1871R 0.14 TCGA-60-2703-01 2 168104249 168104249 C A XIRP2 Missense_Mutation p.S2116Y 0.20 probably_damaging(0.971) TCGA-60-2703-01 2 174229653 174229653 A G CDCA7 Missense_Mutation p.E277G 0.08 tolerated(0.11) benign(0.197) TCGA-60-2703-01 2 176964640 176964640 C A HOXD12 Silent p.A37A 0.06 TCGA-60-2703-01 2 179421989 179421989 C G TTN Missense_Mutation p.D29334H 0.12 TCGA-60-2703-01 2 179463994 179463994 G C TTN Missense_Mutation p.C18842W 0.08 TCGA-60-2703-01 2 179640204 179640204 G T TTN Silent p.P2129P 0.12 TCGA-60-2703-01 2 189931493 189931493 G T COL5A2 Missense_Mutation p.P473T 0.06 probably_damaging(0.993) TCGA-60-2703-01 2 197002171 197002171 C A STK17B Nonstop_Mutation p.*373Yext*5 0.21 TCGA-60-2703-01 2 198950425 198950425 C G PLCL1 Missense_Mutation p.I728M 0.10 deleterious(0) probably_damaging(1) TCGA-60-2703-01 2 202002605 202002605 G C CFLAR Intron 0.28 TCGA-60-2703-01 2 202609086 202609086 T A ALS2 Missense_Mutation p.M689L 0.12 deleterious(0.02) possibly_damaging(0.519) TCGA-60-2703-01 2 203420718 203420718 A G BMPR2 Missense_Mutation p.H777R 0.10 tolerated(0.43) possibly_damaging(0.558) TCGA-60-2703-01 2 216184438 216184438 G A ATIC Missense_Mutation p.D92N 0.09 tolerated(1) benign(0.001) TCGA-60-2703-01 2 216249612 216249612 C T FN1 Missense_Mutation p.R1567K 0.23 tolerated(0.23) probably_damaging(0.993) TCGA-60-2703-01 2 219299418 219299418 G A VIL1 Nonsense_Mutation p.W557* 0.12 TCGA-60-2703-01 2 220430172 220430172 C A OBSL1 Silent p.R733R 0.12 TCGA-60-2703-01 2 225659657 225659657 A T DOCK10 Missense_Mutation p.L1698Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-60-2703-01 2 239353298 239353298 G T ASB1 Silent p.S270S 0.07 TCGA-60-2703-01 2 240055963 240055963 C A HDAC4 Silent p.P424P 0.09 TCGA-60-2703-01 2 240098131 240098131 C T HDAC4 Silent p.K156K 0.09 TCGA-60-2703-01 2 240098223 240098223 C G HDAC4 Missense_Mutation p.E126Q 0.11 tolerated(0.22) probably_damaging(0.944) TCGA-60-2703-01 2 36956577 36956577 G T VIT Missense_Mutation p.V21L 0.16 tolerated(0.97) benign(0.003) TCGA-60-2703-01 2 48040391 48040391 T A FBXO11 Missense_Mutation p.I737L 0.12 deleterious(0) possibly_damaging(0.561) TCGA-60-2703-01 2 90249219 90249219 C T IGKV1D-43 Nonsense_Mutation p.Q59* 0.05 TCGA-60-2703-01 2 96943375 96943375 G A SNRNP200 Silent p.L1945L 0.12 TCGA-60-2703-01 2 98928871 98928871 C T VWA3B 3'UTR 0.12 TCGA-60-2703-01 2 99170813 99170813 A C INPP4A Missense_Mutation p.Y481S 0.07 tolerated(0.23) benign(0.281) TCGA-60-2703-01 3 108278860 108278860 A T KIAA1524 Missense_Mutation p.C615S 0.13 tolerated(0.47) benign(0) TCGA-60-2703-01 3 113866374 113866374 G T DRD3 Nonsense_Mutation p.Y138* 0.14 TCGA-60-2703-01 3 118621385 118621385 C A IGSF11 Silent p.R426R 0.18 TCGA-60-2703-01 3 118945712 118945712 G C B4GALT4 Missense_Mutation p.L144V 0.09 deleterious(0) probably_damaging(0.999) TCGA-60-2703-01 3 119242451 119242451 A T TIMMDC1 Splice_Site p.X236_splice 0.12 TCGA-60-2703-01 3 119886532 119886532 T A GPR156 Missense_Mutation p.M598L 0.20 tolerated(0.93) benign(0.001) TCGA-60-2703-01 3 124160882 124160882 C T KALRN Missense_Mutation p.R1095W 0.23 deleterious(0) probably_damaging(0.949) TCGA-60-2703-01 3 137781599 137781599 G A DZIP1L 3'UTR 0.27 TCGA-60-2703-01 3 140675425 140675425 G - SLC25A36 Frame_Shift_Del p.R33Hfs*7 0.08 TCGA-60-2703-01 3 145914456 145914456 C G PLSCR4 Missense_Mutation p.C250S 0.12 deleterious(0) probably_damaging(0.997) TCGA-60-2703-01 3 147106595 147106595 G C ZIC4 3'UTR 0.17 TCGA-60-2703-01 3 147113753 147113753 C A ZIC4 Missense_Mutation p.V242L 0.20 deleterious(0) possibly_damaging(0.795) TCGA-60-2703-01 3 150877827 150877827 C G MED12L Nonsense_Mutation p.S349* 0.16 TCGA-60-2703-01 3 154890001 154890001 G T MME Missense_Mutation p.Q692H 0.08 deleterious(0) probably_damaging(0.995) TCGA-60-2703-01 3 164906505 164906505 C G SLITRK3 Missense_Mutation p.C705S 0.11 tolerated(0.12) probably_damaging(0.991) TCGA-60-2703-01 3 179051638 179051638 G A ZNF639 Missense_Mutation p.V296I 0.20 tolerated(0.36) benign(0.047) TCGA-60-2703-01 3 180337743 180337743 C T CCDC39 Missense_Mutation p.E672K 0.31 deleterious(0) benign(0.322) TCGA-60-2703-01 3 196083685 196083685 G T UBXN7 Nonsense_Mutation p.Y447* 0.10 TCGA-60-2703-01 3 38359820 38359820 C A SLC22A14 3'UTR 0.18 TCGA-60-2703-01 3 38739984 38739984 C T SCN10A Missense_Mutation p.R1576H 0.18 deleterious(0.01) probably_damaging(0.992) TCGA-60-2703-01 3 43381919 43381919 C A SNRK Nonsense_Mutation p.S291* 0.13 TCGA-60-2703-01 3 48310685 48310685 T C ZNF589 3'UTR 0.23 TCGA-60-2703-01 3 49054258 49054258 A G DALRD3 Missense_Mutation p.V317A 0.20 deleterious(0) possibly_damaging(0.831) TCGA-60-2703-01 3 49152721 49152721 G - USP19 Frame_Shift_Del p.V653Cfs*19 0.21 TCGA-60-2703-01 3 51864588 51864588 G T IQCF3 Missense_Mutation p.R79L 0.16 tolerated(0.16) benign(0.006) TCGA-60-2703-01 3 52610563 52610563 T C PBRM1 Missense_Mutation p.I1204V 0.26 tolerated(0.24) benign(0.068) TCGA-60-2703-01 3 53212519 53212519 C G PRKCD Missense_Mutation p.F27L 0.14 deleterious(0.02) benign(0.058) TCGA-60-2703-01 3 74418388 74418388 C T CNTN3 Missense_Mutation p.E300K 0.16 deleterious(0.03) benign(0.366) TCGA-60-2703-01 4 100532364 100532364 G A MTTP Missense_Mutation p.G612R 0.13 deleterious(0) probably_damaging(0.995) TCGA-60-2703-01 4 100532601 100532601 C T MTTP Silent p.H660H 0.09 TCGA-60-2703-01 4 103644168 103644168 C T MANBA Missense_Mutation p.V137M 0.10 tolerated(0.11) benign(0.16) TCGA-60-2703-01 4 104640358 104640358 G C TACR3 Missense_Mutation p.R159G 0.12 deleterious(0.01) probably_damaging(0.95) TCGA-60-2703-01 4 113352384 113352384 G T ALPK1 Missense_Mutation p.D561Y 0.21 deleterious(0.01) benign(0.1) TCGA-60-2703-01 4 13339510 13339510 A G HSP90AB2P RNA 0.16 TCGA-60-2703-01 4 153332580 153332580 C - FBXW7 Frame_Shift_Del p.D126Ifs*43 0.17 TCGA-60-2703-01 4 155157318 155157318 G A DCHS2 Missense_Mutation p.P2374L 0.19 deleterious(0) probably_damaging(0.991) TCGA-60-2703-01 4 164272281 164272283 AGA - NPY5R In_Frame_Del p.R288del 0.19 TCGA-60-2703-01 4 175565212 175565212 C T GLRA3 Missense_Mutation p.D374N 0.10 tolerated(0.29) benign(0.026) TCGA-60-2703-01 4 30726037 30726037 C T PCDH7 Missense_Mutation p.S998F 0.13 deleterious(0) probably_damaging(0.999) TCGA-60-2703-01 4 46125852 46125852 A T GABRG1 Missense_Mutation p.L27I 0.13 tolerated(0.09) possibly_damaging(0.899) TCGA-60-2703-01 4 517504 517504 A G PIGG Missense_Mutation p.D624G 0.18 tolerated(0.15) benign(0) TCGA-60-2703-01 4 57889516 57889516 G A POLR2B Missense_Mutation p.D846N 0.12 deleterious(0.04) benign(0.243) TCGA-60-2703-01 4 68795668 68795668 T G TMPRSS11A Missense_Mutation p.Q140H 0.43 tolerated(0.89) benign(0.003) TCGA-60-2703-01 4 90035572 90035572 G C TIGD2 Missense_Mutation p.E483Q 0.08 tolerated(0.6) benign(0.061) TCGA-60-2703-01 4 9982361 9982361 C A SLC2A9 Missense_Mutation p.G179V 0.20 deleterious(0) probably_damaging(0.997) TCGA-60-2703-01 5 101816001 101816001 C T SLCO6A1 Missense_Mutation p.G166R 0.30 deleterious(0) probably_damaging(0.999) TCGA-60-2703-01 5 101834361 101834361 C A SLCO6A1 Missense_Mutation p.G63V 0.18 tolerated(0.24) benign(0.133) TCGA-60-2703-01 5 112154780 112154780 G T APC Nonsense_Mutation p.G351* 0.26 TCGA-60-2703-01 5 112154781 112154781 G T APC Missense_Mutation p.G351V 0.26 probably_damaging(0.975) TCGA-60-2703-01 5 128797430 128797430 A T ADAMTS19 Missense_Mutation p.S237C 0.13 deleterious(0) probably_damaging(0.964) TCGA-60-2703-01 5 140476186 140476186 G T PCDHB2 Silent p.L604L 0.10 TCGA-60-2703-01 5 140712615 140712615 G C PCDHGA1 Missense_Mutation p.K788N 0.21 tolerated_low_confidence(0.41) benign(0.003) TCGA-60-2703-01 5 140720449 140720449 G A PCDHGA2 Silent p.A637A 0.12 TCGA-60-2703-01 5 148810257 148810257 G C MIR145 RNA 0.20 TCGA-60-2703-01 5 180040049 180040049 G A FLT4 Silent p.G1131G 0.19 TCGA-60-2703-01 5 19747243 19747243 G A CDH18 Missense_Mutation p.H111Y 0.14 tolerated(0.07) probably_damaging(0.99) TCGA-60-2703-01 5 45396769 45396769 G C HCN1 Missense_Mutation p.A352G 0.04 deleterious(0.02) benign(0.016) TCGA-60-2703-01 5 50091061 50091061 G T PARP8 Missense_Mutation p.S413I 0.17 tolerated_low_confidence(0.17) benign(0.157) TCGA-60-2703-01 5 78944902 78944902 C T PAPD4 Missense_Mutation p.P306S 0.14 deleterious(0) probably_damaging(1) TCGA-60-2703-01 5 79733971 79733971 C A ZFYVE16 Silent p.V489V 0.12 TCGA-60-2703-01 5 819660 819660 C G ZDHHC11 Missense_Mutation p.D376H 0.04 tolerated_low_confidence(0.06) possibly_damaging(0.861) TCGA-60-2703-01 5 9629490 9629490 C T TAS2R1 Missense_Mutation p.G219S 0.32 tolerated(0.84) benign(0.03) TCGA-60-2703-01 6 116600755 116600755 G A TSPYL1 Missense_Mutation p.T80I 0.07 tolerated(0.1) benign(0) TCGA-60-2703-01 6 122733878 122733878 A T HSF2 Missense_Mutation p.Q100L 0.24 deleterious(0) possibly_damaging(0.825) TCGA-60-2703-01 6 123100942 123100942 G A FABP7 Translation_Start_Site p.M1? 0.22 deleterious(0.01) benign(0.38) TCGA-60-2703-01 6 126211026 126211026 C G NCOA7 Missense_Mutation p.S609C 0.16 deleterious(0.01) possibly_damaging(0.738) TCGA-60-2703-01 6 131996295 131996295 G C ENPP3 Missense_Mutation p.G280R 0.07 deleterious(0) possibly_damaging(0.905) TCGA-60-2703-01 6 132022337 132022337 C T OR2A4 Missense_Mutation p.D69N 0.10 deleterious(0.01) possibly_damaging(0.786) TCGA-60-2703-01 6 132938419 132938419 G A TAAR2 Missense_Mutation p.T309I 0.19 tolerated(0.05) benign(0.038) TCGA-60-2703-01 6 135518126 135518126 A T MYB Missense_Mutation p.S411C 0.13 deleterious(0.03) possibly_damaging(0.729) TCGA-60-2703-01 6 149721785 149721785 G A SUMO4 Silent p.V86V 0.13 TCGA-60-2703-01 6 151894306 151894306 T C CCDC170 Intron 0.11 TCGA-60-2703-01 6 152694275 152694275 A T SYNE1 Missense_Mutation p.L3135Q 0.22 probably_damaging(0.956) TCGA-60-2703-01 6 159655009 159655009 G T FNDC1 Silent p.A1155A 0.20 TCGA-60-2703-01 6 166571884 166571884 G T T Missense_Mutation p.D409E 0.14 tolerated(0.38) benign(0.032) TCGA-60-2703-01 6 26108140 26108140 A G HIST1H1T Missense_Mutation p.M61T 0.10 tolerated(0.05) possibly_damaging(0.689) TCGA-60-2703-01 6 27776212 27776212 G A HIST1H2AI Silent p.K75K 0.11 TCGA-60-2703-01 6 28227379 28227379 G T NKAPL Missense_Mutation p.R77I 0.10 deleterious(0.01) unknown(0) TCGA-60-2703-01 6 30863228 30863228 G T DDR1 Missense_Mutation p.A521S 0.12 tolerated(0.75) benign(0.089) TCGA-60-2703-01 6 32036481 32036481 G A TNXB Missense_Mutation p.P1969L 0.24 possibly_damaging(0.573) TCGA-60-2703-01 6 70048875 70048875 G C BAI3 Missense_Mutation p.A1086P 0.14 tolerated(0.15) probably_damaging(0.997) TCGA-60-2703-01 6 7580692 7580692 C A DSP Silent p.L1423L 0.20 TCGA-60-2703-01 6 90045151 90045151 C G UBE2J1 Splice_Site p.X143_splice 0.16 TCGA-60-2703-01 7 105098321 105098321 G A PUS7 Silent p.Y634Y 0.07 TCGA-60-2703-01 7 106523485 106523485 C A PIK3CG Silent p.I879I 0.18 TCGA-60-2703-01 7 107820824 107820824 G A NRCAM Silent p.H898H 0.16 TCGA-60-2703-01 7 107849897 107849897 G T NRCAM Missense_Mutation p.A348D 0.23 deleterious(0.01) benign(0.261) TCGA-60-2703-01 7 116937728 116937728 G A WNT2 Missense_Mutation p.T264M 0.12 deleterious(0.01) possibly_damaging(0.908) TCGA-60-2703-01 7 72738666 72738666 C G TRIM50 Silent p.L40L 0.17 TCGA-60-2703-01 7 81339461 81339461 A G HGF Splice_Site p.X514_splice 0.29 TCGA-60-2703-01 7 82595349 82595349 G T PCLO Missense_Mutation p.A1252E 0.04 unknown(0) TCGA-60-2703-01 7 82784151 82784151 T C PCLO Silent p.P602P 0.21 TCGA-60-2703-01 7 82996928 82996928 G T SEMA3E Missense_Mutation p.L768M 0.14 tolerated(0.22) possibly_damaging(0.472) TCGA-60-2703-01 7 86416286 86416286 T A GRM3 Missense_Mutation p.V393E 0.17 deleterious(0) probably_damaging(0.979) TCGA-60-2703-01 7 88966274 88966274 T G ZNF804B Missense_Mutation p.H1326Q 0.12 deleterious(0.05) benign(0.063) TCGA-60-2703-01 7 90708797 90708797 T A CDK14 Splice_Site p.X367_splice 0.10 TCGA-60-2703-01 7 98528339 98528339 G A TRRAP Silent p.G1159G 0.14 TCGA-60-2703-01 7 99169966 99169966 G A ZNF655 Missense_Mutation p.D114N 0.14 tolerated(0.25) benign(0.005) TCGA-60-2703-01 8 107722966 107722966 T A OXR1 Missense_Mutation p.Y582N 0.12 deleterious(0) probably_damaging(0.999) TCGA-60-2703-01 8 117868981 117868981 C T RAD21 Missense_Mutation p.G240S 0.07 tolerated(0.16) benign(0.216) TCGA-60-2703-01 8 125131111 125131111 A G FER1L6 Silent p.L1772L 0.19 TCGA-60-2703-01 8 133790137 133790137 A T PHF20L1 Silent p.A21A 0.33 TCGA-60-2703-01 8 135669926 135669926 G T ZFAT Nonsense_Mutation p.S25* 0.07 TCGA-60-2703-01 8 139149434 139149434 G C FAM135B Missense_Mutation p.A1324G 0.29 deleterious(0) probably_damaging(0.967) TCGA-60-2703-01 8 139163452 139163452 C G FAM135B Missense_Mutation p.S1089T 0.16 deleterious(0.03) benign(0.006) TCGA-60-2703-01 8 139163791 139163792 GG T FAM135B Frame_Shift_Del p.P976Rfs*14 0.22 TCGA-60-2703-01 8 139165430 139165430 C A FAM135B Missense_Mutation p.D430Y 0.32 deleterious(0) benign(0.316) TCGA-60-2703-01 8 144550628 144550628 T A ZC3H3 Missense_Mutation p.N677Y 0.12 deleterious(0) probably_damaging(0.989) TCGA-60-2703-01 8 144620367 144620367 G A ZC3H3 Silent p.S390S 0.24 TCGA-60-2703-01 8 144680225 144680225 C G TIGD5 Missense_Mutation p.A51G 0.17 tolerated_low_confidence(0.35) benign(0.017) TCGA-60-2703-01 8 144945276 144945276 C T EPPK1 Missense_Mutation p.G716S 0.32 possibly_damaging(0.846) TCGA-60-2703-01 8 17163330 17163330 G A MTMR7 Missense_Mutation p.H430Y 0.19 deleterious(0.01) probably_damaging(0.99) TCGA-60-2703-01 8 20031953 20031953 A G SLC18A1 Missense_Mutation p.F184L 0.27 deleterious(0) possibly_damaging(0.877) TCGA-60-2703-01 8 53084748 53084748 C A ST18 Missense_Mutation p.D225Y 0.10 tolerated(0.05) benign(0.003) TCGA-60-2703-01 8 55538579 55538579 A G RP1 Missense_Mutation p.I713V 0.30 tolerated(0.3) benign(0.01) TCGA-60-2703-01 8 71068778 71068778 C T NCOA2 Missense_Mutation p.E608K 0.10 tolerated(0.14) benign(0.055) TCGA-60-2703-01 8 72963091 72963091 A T TRPA1 Silent p.L609L 0.10 TCGA-60-2703-01 8 76465361 76465361 C T HNF4G Nonsense_Mutation p.Q182* 0.14 TCGA-60-2703-01 8 77617413 77617413 T A ZFHX4 Missense_Mutation p.W364R 0.10 possibly_damaging(0.781) TCGA-60-2703-01 8 77765990 77765990 G C ZFHX4 Missense_Mutation p.R2278P 0.21 probably_damaging(0.998) TCGA-60-2703-01 8 80831304 80831304 C G MRPS28 Missense_Mutation p.D159H 0.07 deleterious(0) probably_damaging(0.999) TCGA-60-2703-01 8 92407431 92407431 C A SLC26A7 3'Flank 0.12 TCGA-60-2703-01 8 94934475 94934475 G C PDP1 Missense_Mutation p.W88S 0.13 tolerated(0.41) benign(0) TCGA-60-2703-01 8 98863667 98863667 G T LAPTM4B Missense_Mutation p.A307S 0.15 tolerated(0.08) possibly_damaging(0.654) TCGA-60-2703-01 9 104032314 104032314 G T LPPR1 Silent p.V72V 0.17 TCGA-60-2703-01 9 113562883 113562883 C A MUSK Missense_Mutation p.A742D 0.19 deleterious(0) probably_damaging(1) TCGA-60-2703-01 9 84608728 84608728 C G SPATA31D1 Missense_Mutation p.L1115V 0.16 tolerated(0.41) benign(0.178) TCGA-60-2703-01 9 90500406 90500406 C A SPATA31E1 Missense_Mutation p.T335N 0.15 deleterious(0.01) benign(0.095) TCGA-60-2703-01 X 128724233 128724233 A G OCRL Missense_Mutation p.S898G 0.19 tolerated(1) benign(0) TCGA-60-2703-01 X 135426686 135426686 T C GPR112 Missense_Mutation p.I274T 0.19 tolerated(0.17) benign(0) TCGA-60-2703-01 X 148797272 148797272 A G MAGEA11 Silent p.R67R 0.14 TCGA-60-2703-01 X 150869041 150869041 G A PRRG3 Missense_Mutation p.D78N 0.13 tolerated(0.61) benign(0.424) TCGA-60-2703-01 X 1544494 1544494 C A ASMTL Silent p.V328V 0.22 TCGA-60-2703-01 X 19449705 19449705 A T MAP3K15 Silent p.R339R 0.50 TCGA-60-2703-01 X 26211903 26211903 G A MAGEB6 Intron 0.25 TCGA-60-2703-01 X 35993985 35993985 G T CXorf22 Missense_Mutation p.V890L 0.21 tolerated(0.13) benign(0.145) TCGA-60-2703-01 X 47835675 47835675 C A ZNF182 Missense_Mutation p.G604V 0.26 deleterious(0) probably_damaging(1) TCGA-60-2703-01 X 65393498 65393498 C A HEPH Missense_Mutation p.S214R 0.52 tolerated(0.19) possibly_damaging(0.742) TCGA-60-2704-01 10 135204850 135204850 G A PAOX Missense_Mutation p.R476H 0.06 deleterious(0.03) probably_damaging(0.997) TCGA-60-2704-01 10 24909625 24909625 C A ARHGAP21 Missense_Mutation p.R400L 0.10 deleterious(0.01) probably_damaging(1) TCGA-60-2704-01 10 46965829 46965829 G A SYT15 Silent p.D236D 0.09 TCGA-60-2704-01 10 49661358 49661358 G T ARHGAP22 Missense_Mutation p.T342N 0.31 deleterious(0) benign(0.061) TCGA-60-2704-01 10 50531592 50531592 A T C10orf71 Missense_Mutation p.E334D 0.16 deleterious(0.04) benign(0.031) TCGA-60-2704-01 10 61941166 61941166 T C ANK3 Missense_Mutation p.H702R 0.09 probably_damaging(1) TCGA-60-2704-01 10 64968460 64968460 C A JMJD1C Missense_Mutation p.C990F 0.20 tolerated(0.16) benign(0.139) TCGA-60-2704-01 10 89692899 89692899 A T PTEN Missense_Mutation p.K128M 0.18 deleterious(0) probably_damaging(0.99) TCGA-60-2704-01 10 91487626 91487626 G A KIF20B Silent p.L708L 0.24 TCGA-60-2704-01 11 1096506 1096506 C T MUC2 Silent p.L2177L 0.06 TCGA-60-2704-01 11 118764412 118764412 C T CXCR5 Silent p.F53F 0.05 TCGA-60-2704-01 11 124134907 124134907 T G OR8G5 Missense_Mutation p.L62R 0.15 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-60-2704-01 11 124481532 124481532 G A PANX3 Missense_Mutation p.G27E 0.16 deleterious(0.02) benign(0.01) TCGA-60-2704-01 11 18499176 18499176 G C LDHAL6A Missense_Mutation p.E240D 0.04 tolerated(0.05) benign(0.006) TCGA-60-2704-01 11 2436628 2436628 T C TRPM5 Missense_Mutation p.D401G 0.20 deleterious(0) probably_damaging(0.968) TCGA-60-2704-01 11 4608520 4608520 C T OR52I2 Silent p.L160L 0.09 TCGA-60-2704-01 11 56468590 56468590 C A OR9G1 Missense_Mutation p.H243N 0.05 deleterious(0) probably_damaging(1) TCGA-60-2704-01 11 61511473 61511473 G C DAGLA Missense_Mutation p.E881Q 0.14 tolerated_low_confidence(0.33) benign(0.015) TCGA-60-2704-01 11 65272085 65272085 A G MALAT1 RNA 0.14 TCGA-60-2704-01 11 66192056 66192056 G T NPAS4 Missense_Mutation p.E565D 0.10 tolerated(0.33) benign(0.004) TCGA-60-2704-01 11 66335490 66335490 T A CTSF Missense_Mutation p.M93L 0.20 tolerated(0.21) benign(0) TCGA-60-2704-01 11 74329607 74329607 G T POLD3 Missense_Mutation p.A140S 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-60-2704-01 11 85627275 85627275 A G CCDC83 Missense_Mutation p.K391R 0.06 tolerated(0.15) benign(0.125) TCGA-60-2704-01 11 8752096 8752096 G C ST5 Silent p.L247L 0.07 TCGA-60-2704-01 12 104337594 104337594 A C HSP90B1 Missense_Mutation p.N657H 0.10 deleterious(0) probably_damaging(1) TCGA-60-2704-01 12 110570418 110570418 T C IFT81 Missense_Mutation p.F166L 0.19 tolerated(0.47) benign(0.091) TCGA-60-2704-01 12 111786006 111786006 C T CUX2 Silent p.H1446H 0.18 TCGA-60-2704-01 12 113314534 113314534 G C RPH3A Missense_Mutation p.R345T 0.10 tolerated(0.09) benign(0.357) TCGA-60-2704-01 12 11506022 11506022 T C PRB1 3'UTR 0.15 TCGA-60-2704-01 12 122692858 122692858 C - DIABLO 3'UTR 0.11 TCGA-60-2704-01 12 132625875 132625875 C T DDX51 Missense_Mutation p.A399T 0.08 tolerated(0.56) benign(0.01) TCGA-60-2704-01 12 15677831 15677831 G T PTPRO Missense_Mutation p.D659Y 0.32 deleterious(0) probably_damaging(0.929) TCGA-60-2704-01 12 21358832 21358832 A G SLCO1B1 Silent p.V454V 0.06 TCGA-60-2704-01 12 48578204 48578204 G A C12orf68 Missense_Mutation p.G100D 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-60-2704-01 12 49484137 49484137 G T DHH Silent p.G232G 0.23 TCGA-60-2704-01 12 54686361 54686361 G T NFE2 Silent p.R307R 0.20 TCGA-60-2704-01 12 56364887 56364887 T C CDK2 Silent p.F216F 0.16 TCGA-60-2704-01 12 6926330 6926330 G A CD4 Silent p.V330V 0.33 TCGA-60-2704-01 12 71286622 71286622 C A PTPRR Missense_Mutation p.S65I 0.15 deleterious_low_confidence(0.03) benign(0.019) TCGA-60-2704-01 12 7522059 7522059 A G CD163L1 Silent p.D1311D 0.32 TCGA-60-2704-01 12 8211995 8211995 C T C3AR1 Missense_Mutation p.D263N 0.29 tolerated(0.22) benign(0.002) TCGA-60-2704-01 12 94645277 94645277 C A PLXNC1 Missense_Mutation p.P952T 0.14 tolerated(0.1) probably_damaging(0.954) TCGA-60-2704-01 13 110437475 110437475 G C IRS2 Missense_Mutation p.S309W 0.24 deleterious(0) probably_damaging(0.985) TCGA-60-2704-01 13 19751273 19751273 C A TUBA3C Nonsense_Mutation p.E284* 0.22 TCGA-60-2704-01 13 24471132 24471132 G T C1QTNF9B 5'UTR 0.21 TCGA-60-2704-01 13 25020860 25020860 T A PARP4 Missense_Mutation p.T1109S 0.24 tolerated(0.1) benign(0.285) TCGA-60-2704-01 13 33344583 33344583 A C PDS5B Missense_Mutation p.K1317Q 0.25 deleterious_low_confidence(0.02) benign(0.277) TCGA-60-2704-01 13 39438718 39438718 G T FREM2 Missense_Mutation p.G2653V 0.11 deleterious(0) probably_damaging(0.989) TCGA-60-2704-01 13 50495684 50495684 T C SPRYD7 Silent p.V141V 0.22 TCGA-60-2704-01 14 106405852 106405852 G T IGHV6-1 Missense_Mutation p.T41N 0.25 deleterious(0.02) benign(0.404) TCGA-60-2704-01 14 20528307 20528307 A G OR4L1 Missense_Mutation p.Y35C 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-60-2704-01 14 24793555 24793555 G C ADCY4 Silent p.L622L 0.17 TCGA-60-2704-01 14 25042918 25042918 G T CTSG Silent p.V231V 0.20 TCGA-60-2704-01 14 64681076 64681076 G A SYNE2 Silent p.E6407E 0.16 TCGA-60-2704-01 14 67854012 67854012 A G PLEK2 3'UTR 0.13 TCGA-60-2704-01 14 68222790 68222790 C T ZFYVE26 Missense_Mutation p.E2221K 0.19 deleterious(0.02) possibly_damaging(0.574) TCGA-60-2704-01 15 34649434 34649434 C A NUTM1 Silent p.G1047G 0.06 TCGA-60-2704-01 15 40917125 40917125 C G CASC5 Missense_Mutation p.H1581D 0.20 tolerated(0.24) benign(0.005) TCGA-60-2704-01 15 45052054 45052054 G A TRIM69 Silent p.Q315Q 0.16 TCGA-60-2704-01 15 48739020 48739020 C G FBN1 Splice_Site p.X1891_splice 0.24 TCGA-60-2704-01 15 64017535 64017535 G A HERC1 Missense_Mutation p.T1175M 0.10 benign(0.157) TCGA-60-2704-01 15 78466073 78466073 C T ACSBG1 Missense_Mutation p.E651K 0.10 tolerated(0.45) benign(0.006) TCGA-60-2704-01 15 85400906 85400906 G T ALPK3 Silent p.G1181G 0.09 TCGA-60-2704-01 15 89391266 89391266 G C ACAN Missense_Mutation p.E577Q 0.04 tolerated(0.09) unknown(0) TCGA-60-2704-01 15 90774201 90774201 G C CIB1 Missense_Mutation p.F173L 0.22 deleterious(0) probably_damaging(1) TCGA-60-2704-01 16 30535997 30535997 G A ZNF768 Silent p.A488A 0.25 TCGA-60-2704-01 16 56678083 56678083 A G MT1A 3'Flank 0.18 TCGA-60-2704-01 16 57601470 57601470 C T GPR114 Missense_Mutation p.S263L 0.15 deleterious(0.03) probably_damaging(0.957) TCGA-60-2704-01 17 10312703 10312703 A T MYH8 Missense_Mutation p.L597Q 0.22 deleterious(0) probably_damaging(1) TCGA-60-2704-01 17 10430317 10430317 C T MYH2 Missense_Mutation p.G1310S 0.19 tolerated(0.35) benign(0.032) TCGA-60-2704-01 17 10432958 10432958 C T MYH2 Missense_Mutation p.D1014N 0.22 deleterious(0.02) probably_damaging(1) TCGA-60-2704-01 17 16285876 16285876 C T UBB Silent p.L219L 0.31 TCGA-60-2704-01 17 39976518 39976518 C T FKBP10 Intron 0.18 TCGA-60-2704-01 17 41004836 41004836 G A AOC3 Silent p.T492T 0.23 TCGA-60-2704-01 17 42925522 42925522 T C HIGD1B Translation_Start_Site p.M1? 0.27 deleterious(0) probably_damaging(0.983) TCGA-60-2704-01 17 45258950 45258950 G T CDC27 Silent p.L27L 0.25 TCGA-60-2704-01 17 4621265 4621265 C T ARRB2 Missense_Mutation p.H211Y 0.31 deleterious(0.03) probably_damaging(0.974) TCGA-60-2704-01 17 46805966 46805966 G T HOXB13 5'UTR 0.26 TCGA-60-2704-01 17 60768044 60768044 G A MRC2 Missense_Mutation p.V1312M 0.20 tolerated(0.12) possibly_damaging(0.466) TCGA-60-2704-01 17 74136140 74136140 C A FOXJ1 Missense_Mutation p.D113Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-60-2704-01 17 74387075 74387075 G A UBE2O Silent p.F1276F 0.25 TCGA-60-2704-01 17 7578286 7578287 AG - TP53 Frame_Shift_Del p.L188Gfs*20 0.17 TCGA-60-2704-01 18 29450413 29450413 C G TRAPPC8 Missense_Mutation p.L770F 0.19 tolerated(0.07) benign(0.039) TCGA-60-2704-01 18 47810470 47810470 G T CXXC1 Missense_Mutation p.R407S 0.20 deleterious(0) possibly_damaging(0.876) TCGA-60-2704-01 19 10127797 10127797 G A RDH8 Silent p.L76L 0.11 TCGA-60-2704-01 19 10461593 10461593 T C TYK2 Missense_Mutation p.T1161A 0.10 tolerated(0.16) benign(0.036) TCGA-60-2704-01 19 13476166 13476166 C A CACNA1A Missense_Mutation p.G250V 0.11 probably_damaging(0.988) TCGA-60-2704-01 19 13476167 13476167 C A CACNA1A Nonsense_Mutation p.G250* 0.10 TCGA-60-2704-01 19 1360218 1360218 G C MUM1 Missense_Mutation p.E101Q 0.10 tolerated(0.17) benign(0.028) TCGA-60-2704-01 19 15052578 15052578 C G OR7C2 Missense_Mutation p.T93S 0.14 tolerated_low_confidence(0.5) benign(0.05) TCGA-60-2704-01 19 17311620 17311620 C T MYO9B Silent p.D1515D 0.08 TCGA-60-2704-01 19 17452419 17452419 G T GTPBP3 Silent p.R494R 0.19 TCGA-60-2704-01 19 33602707 33602707 G T GPATCH1 Missense_Mutation p.A555S 0.11 tolerated(0.28) benign(0.244) TCGA-60-2704-01 19 39888181 39888181 G A MED29 Missense_Mutation p.A170T 0.16 tolerated(0.51) benign(0.029) TCGA-60-2704-01 19 47424529 47424529 C T ARHGAP35 Missense_Mutation p.S866F 0.08 deleterious(0) probably_damaging(0.999) TCGA-60-2704-01 19 50139881 50139881 G A RRAS Missense_Mutation p.R150C 0.17 deleterious(0) possibly_damaging(0.836) TCGA-60-2704-01 19 50204634 50204634 C A CPT1C Missense_Mutation p.P172T 0.16 deleterious(0) probably_damaging(1) TCGA-60-2704-01 19 51192544 51192544 G A SHANK1 Intron 0.13 TCGA-60-2704-01 19 5265110 5265110 G T PTPRS Missense_Mutation p.S159R 0.10 deleterious(0) probably_damaging(0.974) TCGA-60-2704-01 19 53669383 53669383 G C ZNF665 Silent p.L120L 0.11 TCGA-60-2704-01 19 54137897 54137897 A T DPRX Missense_Mutation p.K47N 0.14 tolerated(0.14) possibly_damaging(0.493) TCGA-60-2704-01 19 54327155 54327155 C G NLRP12 Missense_Mutation p.E92Q 0.05 deleterious(0) probably_damaging(0.965) TCGA-60-2704-01 19 54872655 54872655 T A LAIR1 Missense_Mutation p.S78C 0.16 tolerated(0.05) probably_damaging(0.993) TCGA-60-2704-01 19 54872732 54872732 G T LAIR1 Missense_Mutation p.P52Q 0.17 deleterious(0) probably_damaging(0.998) TCGA-60-2704-01 19 55687121 55687121 G A SYT5 Missense_Mutation p.R166W 0.07 deleterious(0) probably_damaging(0.999) TCGA-60-2704-01 19 6495597 6495597 G T TUBB4A Missense_Mutation p.P305T 0.11 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-60-2704-01 19 6921812 6921812 T C EMR1 Missense_Mutation p.L570P 0.11 deleterious(0) probably_damaging(0.981) TCGA-60-2704-01 1 147381319 147381319 G A GJA8 Missense_Mutation p.A413T 0.21 tolerated(1) unknown(0) TCGA-60-2704-01 1 151138571 151138571 C G SCNM1 5'UTR 0.50 TCGA-60-2704-01 1 152659562 152659562 C A LCE2B Missense_Mutation p.F81L 0.28 tolerated_low_confidence(0.42) unknown(0) TCGA-60-2704-01 1 158687897 158687897 G T OR6K3 Missense_Mutation p.S3R 0.20 tolerated(0.46) benign(0.002) TCGA-60-2704-01 1 16785432 16785432 C T NECAP2 Missense_Mutation p.H255Y 0.14 deleterious_low_confidence(0.02) benign(0.008) TCGA-60-2704-01 1 167870904 167870904 C G ADCY10 Missense_Mutation p.K144N 0.03 deleterious(0) probably_damaging(1) TCGA-60-2704-01 1 173933307 173933307 C A RC3H1 Missense_Mutation p.K545N 0.33 tolerated(0.2) benign(0.305) TCGA-60-2704-01 1 197069888 197069888 T C ASPM Silent p.R2831R 0.10 TCGA-60-2704-01 1 198704368 198704368 T C PTPRC Missense_Mutation p.L797S 0.21 deleterious(0) probably_damaging(0.99) TCGA-60-2704-01 1 216108061 216108061 G A USH2A Silent p.I2399I 0.07 TCGA-60-2704-01 1 220192351 220192351 A G EPRS Missense_Mutation p.F474L 0.27 deleterious(0) probably_damaging(0.986) TCGA-60-2704-01 1 223176542 223176542 G A DISP1 Silent p.L601L 0.25 TCGA-60-2704-01 1 226074425 226074425 G T LEFTY1 3'UTR 0.21 TCGA-60-2704-01 1 229738527 229738527 C T TAF5L Silent p.Q129Q 0.04 TCGA-60-2704-01 1 229738549 229738549 C G TAF5L Missense_Mutation p.R122P 0.23 deleterious(0) probably_damaging(0.988) TCGA-60-2704-01 1 246811081 246811081 G T CNST Silent p.V526V 0.21 TCGA-60-2704-01 1 31212657 31212657 G T LAPTM5 Missense_Mutation p.A129D 0.22 tolerated(0.62) benign(0.049) TCGA-60-2704-01 1 34192262 34192262 G A CSMD2 Missense_Mutation p.S758L 0.17 deleterious(0) benign(0.212) TCGA-60-2704-01 1 46165682 46165682 T C IPP Missense_Mutation p.N571D 0.25 tolerated(0.49) benign(0.034) TCGA-60-2704-01 1 70504677 70504677 A T LRRC7 Missense_Mutation p.Q1019L 0.15 deleterious(0.01) possibly_damaging(0.724) TCGA-60-2704-01 20 126340 126340 C T DEFB126 3'UTR 0.29 TCGA-60-2704-01 20 33337427 33337427 G A NCOA6 Silent p.F857F 0.05 TCGA-60-2704-01 20 33337840 33337840 G C NCOA6 Missense_Mutation p.Q720E 0.08 probably_damaging(0.966) TCGA-60-2704-01 20 33568488 33568488 G T MYH7B Silent p.P192P 0.06 TCGA-60-2704-01 20 36694579 36694579 G A RPRD1B Missense_Mutation p.R251H 0.06 deleterious(0) probably_damaging(0.996) TCGA-60-2704-01 20 47296294 47296294 T C PREX1 Splice_Site p.X479_splice 0.07 TCGA-60-2704-01 20 60551310 60551310 C T TAF4 Missense_Mutation p.V1058I 0.10 probably_damaging(0.97) TCGA-60-2704-01 20 61143748 61143748 T A C20orf166 5'Flank 0.17 TCGA-60-2704-01 20 61598724 61598724 G T SLC17A9 Nonsense_Mutation p.E395* 0.08 TCGA-60-2704-01 20 746287 746287 G T SLC52A3 Silent p.L44L 0.29 TCGA-60-2704-01 20 7866452 7866452 G A HAO1 Silent p.D291D 0.32 TCGA-60-2704-01 21 19713814 19713814 C T TMPRSS15 Missense_Mutation p.D494N 0.21 deleterious(0) probably_damaging(1) TCGA-60-2704-01 22 21157582 21157582 G C PI4KA Missense_Mutation p.F496L 0.17 deleterious(0.01) probably_damaging(0.967) TCGA-60-2704-01 22 22707501 22707501 C T IGLV5-48 Missense_Mutation p.S30L 0.09 deleterious(0) probably_damaging(0.977) TCGA-60-2704-01 22 22869592 22869592 A G ZNF280A Silent p.S121S 0.11 TCGA-60-2704-01 22 23154646 23154646 G C IGLV3-10 Missense_Mutation p.R72P 0.12 deleterious(0) probably_damaging(0.968) TCGA-60-2704-01 22 30050661 30050661 C T NF2 Missense_Mutation p.P155S 0.17 tolerated(0.18) benign(0.129) TCGA-60-2704-01 22 30722803 30722803 C A TBC1D10A Missense_Mutation p.R23L 0.11 tolerated(0.43) benign(0.003) TCGA-60-2704-01 22 39715602 39715602 T C RPL3 Translation_Start_Site p.M1? 0.20 deleterious(0) possibly_damaging(0.569) TCGA-60-2704-01 2 100623740 100623740 C G AFF3 Missense_Mutation p.Q144H 0.18 tolerated(0.53) benign(0.006) TCGA-60-2704-01 2 116066871 116066871 G T DPP10 Silent p.L43L 0.19 TCGA-60-2704-01 2 1507820 1507820 C T TPO Silent p.Y829Y 0.14 TCGA-60-2704-01 2 16743354 16743354 G T FAM49A Silent p.T118T 0.13 TCGA-60-2704-01 2 179575504 179575504 G A TTN Silent p.G9440G 0.06 TCGA-60-2704-01 2 179575505 179575505 C T TTN Missense_Mutation p.G9440D 0.06 TCGA-60-2704-01 2 179587133 179587133 C G TTN Missense_Mutation p.D7461H 0.26 TCGA-60-2704-01 2 201534423 201534423 G A AOX1 Silent p.P1308P 0.04 TCGA-60-2704-01 2 206628398 206628398 A G NRP2 Missense_Mutation p.D682G 0.12 tolerated(1) benign(0.015) TCGA-60-2704-01 2 217057377 217057377 C T XRCC5 Missense_Mutation p.R654C 0.26 tolerated(0.22) benign(0.215) TCGA-60-2704-01 2 242157658 242157658 T A ANO7 Missense_Mutation p.F782Y 0.15 deleterious(0.02) benign(0.108) TCGA-60-2704-01 2 46842138 46842138 G C PIGF Missense_Mutation p.L56V 0.14 tolerated(0.76) benign(0.042) TCGA-60-2704-01 2 73678600 73678600 G T ALMS1 Missense_Mutation p.G1648V 0.19 possibly_damaging(0.786) TCGA-60-2704-01 2 84518369 84518369 G T FUNDC2P2 RNA 0.06 TCGA-60-2704-01 3 119133023 119133023 C T ARHGAP31 Silent p.L749L 0.11 TCGA-60-2704-01 3 120924775 120924775 A C STXBP5L Missense_Mutation p.S295R 0.17 tolerated(0.41) benign(0.311) TCGA-60-2704-01 3 124739758 124739758 G A HEG1 Missense_Mutation p.S377F 0.07 tolerated(0.07) benign(0.007) TCGA-60-2704-01 3 126445987 126445987 A G CHCHD6 Missense_Mutation p.T52A 0.30 tolerated(1) benign(0.001) TCGA-60-2704-01 3 154856025 154856025 T A MME Missense_Mutation p.N285K 0.32 tolerated(0.11) benign(0.1) TCGA-60-2704-01 3 167045785 167045785 C T ZBBX Nonsense_Mutation p.W269* 0.11 TCGA-60-2704-01 3 170625609 170625609 G A EIF5A2 5'UTR 0.12 TCGA-60-2704-01 3 184086143 184086143 G C POLR2H 3'UTR 0.09 TCGA-60-2704-01 3 45038635 45038635 A T EXOSC7 Missense_Mutation p.E104V 0.12 deleterious(0) benign(0.358) TCGA-60-2704-01 3 56680789 56680789 C T FAM208A Missense_Mutation p.R659K 0.17 tolerated(1) benign(0.005) TCGA-60-2704-01 3 62739295 62739295 A G CADPS Missense_Mutation p.W237R 0.14 deleterious(0) possibly_damaging(0.608) TCGA-60-2704-01 3 81586138 81586138 C T GBE1 Missense_Mutation p.R576H 0.07 deleterious(0) probably_damaging(0.999) TCGA-60-2704-01 3 97806025 97806025 A T OR5AC2 Silent p.I3I 0.20 TCGA-60-2704-01 4 123117851 123117851 G T KIAA1109 Missense_Mutation p.A372S 0.18 benign(0.242) TCGA-60-2704-01 4 155256183 155256183 G A DCHS2 Silent p.D351D 0.08 TCGA-60-2704-01 4 1670418 1670418 G C FAM53A Silent p.L17L 0.15 TCGA-60-2704-01 4 170912416 170912416 T C MFAP3L 3'UTR 0.29 TCGA-60-2704-01 4 177142305 177142305 C G ASB5 Splice_Site p.X224_splice 0.14 TCGA-60-2704-01 4 183600871 183600871 G A TENM3 Missense_Mutation p.R460Q 0.09 tolerated(0.07) benign(0.011) TCGA-60-2704-01 4 20731683 20731683 G T KCNIP4 3'UTR 0.20 TCGA-60-2704-01 4 7436229 7436229 C T PSAPL1 Silent p.P126P 0.20 TCGA-60-2704-01 4 79158754 79158754 C G FRAS1 Missense_Mutation p.Q67E 0.16 benign(0.066) TCGA-60-2704-01 5 1232420 1232420 C T SLC6A18 Missense_Mutation p.R83W 0.08 deleterious(0) probably_damaging(0.995) TCGA-60-2704-01 5 140803201 140803201 G A PCDHGA11 Missense_Mutation p.G803S 0.18 tolerated_low_confidence(0.32) benign(0.058) TCGA-60-2704-01 5 160071176 160071176 G A ATP10B Silent p.T279T 0.07 TCGA-60-2704-01 5 21783498 21783498 C A CDH12 Missense_Mutation p.Q454H 0.12 deleterious(0) possibly_damaging(0.849) TCGA-60-2704-01 5 21854867 21854867 C A CDH12 Missense_Mutation p.A187S 0.11 deleterious(0.01) probably_damaging(0.992) TCGA-60-2704-01 5 35774081 35774081 G A SPEF2 Missense_Mutation p.V1346I 0.24 tolerated(0.1) benign(0.003) TCGA-60-2704-01 5 45645511 45645511 C G HCN1 Missense_Mutation p.D209H 0.23 deleterious(0) probably_damaging(0.999) TCGA-60-2704-01 5 86645135 86645135 C G RASA1 Missense_Mutation p.P403A 0.29 tolerated(0.17) probably_damaging(0.962) TCGA-60-2704-01 5 93859656 93859656 C A KIAA0825 Missense_Mutation p.L93F 0.14 deleterious(0) possibly_damaging(0.871) TCGA-60-2704-01 5 94834096 94834096 G - TTC37 Frame_Shift_Del p.Q1181Kfs*36 0.15 TCGA-60-2704-01 5 99921884 99921884 G A FAM174A Splice_Site p.X190_splice 0.11 TCGA-60-2704-01 6 123892146 123892146 G T TRDN Missense_Mutation p.L52M 0.06 deleterious_low_confidence(0) possibly_damaging(0.472) TCGA-60-2704-01 6 131996296 131996296 G T ENPP3 Missense_Mutation p.G280V 0.16 deleterious(0) probably_damaging(0.931) TCGA-60-2704-01 6 136599077 136599077 C T BCLAF1 Silent p.E314E 0.06 TCGA-60-2704-01 6 158541594 158541594 G T SERAC1 Silent p.I343I 0.17 TCGA-60-2704-01 6 161494611 161494611 C T MAP3K4 Silent p.D688D 0.06 TCGA-60-2704-01 6 170873710 170873710 A G TBP Missense_Mutation p.Y192C 0.24 deleterious(0) probably_damaging(0.998) TCGA-60-2704-01 6 2893754 2893754 A G SERPINB9 Missense_Mutation p.I153T 0.13 deleterious(0.04) benign(0.159) TCGA-60-2704-01 6 31779021 31779021 G A HSPA1L Silent p.F243F 0.10 TCGA-60-2704-01 6 31828281 31828281 C G NEU1 Missense_Mutation p.G245R 0.04 tolerated(0.38) benign(0.014) TCGA-60-2704-01 6 32713633 32713633 T A HLA-DQA2 Missense_Mutation p.C133S 0.07 deleterious(0) probably_damaging(1) TCGA-60-2704-01 6 33257973 33257973 G A PFDN6 Silent p.G29G 0.12 TCGA-60-2704-01 6 36269815 36269815 G A PNPLA1 Missense_Mutation p.G318E 0.11 tolerated(0.69) benign(0.003) TCGA-60-2704-01 6 42141289 42141289 T C GUCA1A 5'UTR 0.19 TCGA-60-2704-01 6 57512610 57512610 A T PRIM2 3'UTR 0.05 TCGA-60-2704-01 6 6589054 6589054 A G LY86 Silent p.T29T 0.11 TCGA-60-2704-01 6 66115232 66115232 A T EYS Silent p.P297P 0.10 TCGA-60-2704-01 6 72967930 72967930 G T RIMS1 Missense_Mutation p.R958L 0.13 deleterious(0) probably_damaging(0.996) TCGA-60-2704-01 6 73000541 73000541 G A RIMS1 Silent p.A1238A 0.20 TCGA-60-2704-01 6 73000542 73000542 C A RIMS1 Missense_Mutation p.P1239T 0.17 deleterious(0) possibly_damaging(0.711) TCGA-60-2704-01 6 83891562 83891562 T C PGM3 Missense_Mutation p.Y255C 0.09 deleterious(0.01) benign(0.09) TCGA-60-2704-01 6 99729088 99729088 A C FAXC Missense_Mutation p.D394E 0.09 tolerated_low_confidence(0.08) possibly_damaging(0.786) TCGA-60-2704-01 7 100200142 100200142 T - PCOLCE Frame_Shift_Del p.F22Lfs*20 0.09 TCGA-60-2704-01 7 100275374 100275374 G C GNB2 Splice_Site p.X144_splice 0.09 TCGA-60-2704-01 7 100390059 100390059 A T ZAN Missense_Mutation p.D2581V 0.25 unknown(0) TCGA-60-2704-01 7 119914937 119914937 T C KCND2 Missense_Mutation p.F84S 0.12 deleterious(0) probably_damaging(1) TCGA-60-2704-01 7 120591179 120591179 C T ING3 Intron 0.22 TCGA-60-2704-01 7 143826317 143826317 C A OR2A14 Missense_Mutation p.L38M 0.11 deleterious(0.03) possibly_damaging(0.561) TCGA-60-2704-01 7 149483294 149483294 C T SSPO RNA 0.17 TCGA-60-2704-01 7 154561140 154561140 G A DPP6 Silent p.K299K 0.06 TCGA-60-2704-01 7 30793540 30793540 G T INMT Missense_Mutation p.E116D 0.32 tolerated(0.2) benign(0.008) TCGA-60-2704-01 7 31683429 31683429 C T CCDC129 Silent p.C841C 0.22 TCGA-60-2704-01 7 42974672 42974672 T C MRPL32 Silent p.N83N 0.26 TCGA-60-2704-01 7 96639212 96639212 G A DLX6 Silent p.S245S 0.12 TCGA-60-2704-01 8 10465408 10465408 G T RP1L1 Missense_Mutation p.A2067D 0.07 unknown(0) TCGA-60-2704-01 8 107751739 107751739 C G OXR1 Missense_Mutation p.D698E 0.10 tolerated(0.57) benign(0.007) TCGA-60-2704-01 8 113392659 113392659 T C CSMD3 Missense_Mutation p.S2020G 0.11 deleterious(0) possibly_damaging(0.9) TCGA-60-2704-01 8 11637437 11637437 G A NEIL2 Missense_Mutation p.D157N 0.05 tolerated(0.07) probably_damaging(0.936) TCGA-60-2704-01 8 133596026 133596026 C T LRRC6 Missense_Mutation p.V381I 0.13 tolerated(0.13) benign(0.029) TCGA-60-2704-01 8 139736911 139736911 C T COL22A1 Missense_Mutation p.G732S 0.24 unknown(0) TCGA-60-2704-01 8 145139324 145139324 C T GPAA1 Silent p.P274P 0.23 TCGA-60-2704-01 8 145694955 145694955 C T KIFC2 Silent p.V435V 0.08 TCGA-60-2704-01 8 145999969 145999969 T C ZNF34 Missense_Mutation p.Y122C 0.21 tolerated(0.18) benign(0.001) TCGA-60-2704-01 8 20075730 20075730 A C ATP6V1B2 Missense_Mutation p.T445P 0.10 deleterious(0) benign(0.018) TCGA-60-2704-01 8 42196076 42196076 C A POLB 5'UTR 0.04 TCGA-60-2704-01 8 52321315 52321315 C A PXDNL Missense_Mutation p.G957W 0.19 deleterious(0) probably_damaging(1) TCGA-60-2704-01 8 90777643 90777643 C G RIPK2 Nonsense_Mutation p.Y134* 0.14 TCGA-60-2704-01 9 107331845 107331845 C A OR13C8 Missense_Mutation p.P133T 0.29 tolerated(0.14) benign(0.11) TCGA-60-2704-01 9 108483903 108483903 G A TMEM38B Missense_Mutation p.E119K 0.22 deleterious(0) probably_damaging(0.997) TCGA-60-2704-01 9 127952029 127952029 G A PPP6C 5'UTR 0.29 TCGA-60-2704-01 9 136501787 136501787 A G DBH Silent p.A98A 0.23 TCGA-60-2704-01 9 138670543 138670543 C G KCNT1 Missense_Mutation p.S868R 0.30 deleterious(0) possibly_damaging(0.568) TCGA-60-2704-01 9 65506502 65506502 C A SPATA31A7 Missense_Mutation p.R353L 0.51 deleterious(0) benign(0) TCGA-60-2704-01 9 94486705 94486705 G T ROR2 Missense_Mutation p.Q691K 0.45 deleterious(0) probably_damaging(1) TCGA-60-2704-01 X 103349441 103349441 C A SLC25A53 Missense_Mutation p.W167L 0.18 tolerated(0.15) possibly_damaging(0.551) TCGA-60-2704-01 X 111155905 111155905 G T TRPC5 Missense_Mutation p.H172N 0.18 deleterious(0) probably_damaging(0.999) TCGA-60-2704-01 X 118222694 118222694 G A KIAA1210 Silent p.D833D 0.23 TCGA-60-2704-01 X 123778999 123778999 C T TENM1 Missense_Mutation p.E624K 0.16 tolerated(0.08) possibly_damaging(0.777) TCGA-60-2704-01 X 138871611 138871611 T C ATP11C Missense_Mutation p.T418A 0.29 deleterious(0.01) possibly_damaging(0.641) TCGA-60-2704-01 X 1484073 1484073 T C IL3RA Missense_Mutation p.Y268H 0.03 deleterious(0) probably_damaging(0.936) TCGA-60-2704-01 X 153880770 153880770 C A CTAG2 Missense_Mutation p.M135I 0.19 tolerated_low_confidence(0.8) benign(0.002) TCGA-60-2704-01 X 54837383 54837383 G T MAGED2 Missense_Mutation p.A223S 0.62 deleterious(0.01) probably_damaging(0.996) TCGA-60-2704-01 X 595437 595437 G A SHOX Missense_Mutation p.R121H 0.28 deleterious(0) probably_damaging(0.991) TCGA-60-2704-01 X 73961956 73961956 T A KIAA2022 Silent p.G812G 0.26 TCGA-60-2707-01 10 17142197 17142197 C A CUBN Missense_Mutation p.M524I 0.28 tolerated(0.25) benign(0.001) TCGA-60-2707-01 10 17432598 17432598 C A ST8SIA6 Silent p.S74S 0.21 TCGA-60-2707-01 10 18254544 18254544 A G SLC39A12 Missense_Mutation p.N226D 0.30 tolerated(0.12) benign(0.006) TCGA-60-2707-01 10 50690811 50690811 T A ERCC6 Missense_Mutation p.L697F 0.22 deleterious(0) probably_damaging(0.946) TCGA-60-2707-01 10 50856640 50856640 C A CHAT Missense_Mutation p.L457M 0.33 deleterious(0.03) probably_damaging(0.995) TCGA-60-2707-01 10 79581516 79581516 T C DLG5 Missense_Mutation p.D909G 0.48 tolerated(0.23) benign(0.213) TCGA-60-2707-01 10 87628874 87628874 G A GRID1 Missense_Mutation p.R282W 0.04 deleterious(0) possibly_damaging(0.9) TCGA-60-2707-01 10 89685287 89685287 A G PTEN Missense_Mutation p.H61R 0.26 deleterious(0) probably_damaging(0.986) TCGA-60-2707-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.61 TCGA-60-2707-01 11 10483250 10483250 G T AMPD3 Nonsense_Mutation p.E71* 0.26 TCGA-60-2707-01 11 124135521 124135521 G A OR8G5 Missense_Mutation p.E267K 0.05 deleterious(0.04) benign(0.085) TCGA-60-2707-01 11 128360395 128360395 G A ETS1 Silent p.F97F 0.05 TCGA-60-2707-01 11 129321248 129321248 C A BARX2 Missense_Mutation p.P264Q 0.26 tolerated_low_confidence(0.99) unknown(0) TCGA-60-2707-01 11 130286846 130286846 G A ADAMTS8 Missense_Mutation p.A362V 0.22 deleterious(0) probably_damaging(0.995) TCGA-60-2707-01 11 26568986 26568986 G C ANO3 Missense_Mutation p.G393A 0.02 tolerated(0.13) probably_damaging(1) TCGA-60-2707-01 11 5255418 5255418 G T HBD Missense_Mutation p.Q40K 0.29 deleterious(0.02) benign(0.244) TCGA-60-2707-01 11 55735361 55735361 T A OR10AG1 Silent p.V193V 0.27 TCGA-60-2707-01 11 92715227 92715227 G A MTNR1B Missense_Mutation p.E280K 0.05 tolerated(0.45) benign(0.014) TCGA-60-2707-01 12 31135496 31135496 C T TSPAN11 Silent p.A162A 0.07 TCGA-60-2707-01 12 39756974 39756974 G C KIF21A Missense_Mutation p.S315R 0.27 deleterious(0.03) probably_damaging(0.998) TCGA-60-2707-01 12 40153784 40153784 C A SLC2A13 3'UTR 0.25 TCGA-60-2707-01 12 43824238 43824238 C T ADAMTS20 Missense_Mutation p.D1100N 0.16 tolerated(0.08) benign(0.3) TCGA-60-2707-01 12 56346885 56346885 C G DGKA Missense_Mutation p.I668M 0.08 deleterious(0.01) probably_damaging(1) TCGA-60-2707-01 12 63954162 63954162 C T DPY19L2 3'UTR 0.22 TCGA-60-2707-01 12 8290778 8290778 C T CLEC4A Silent p.C203C 0.06 TCGA-60-2707-01 14 19563733 19563733 G T POTEG Intron 0.14 TCGA-60-2707-01 14 19563734 19563734 G T POTEG Intron 0.15 TCGA-60-2707-01 14 65008837 65008837 C A HSPA2 Missense_Mutation p.P424T 0.31 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-60-2707-01 14 70925837 70925837 G T ADAM21 Missense_Mutation p.G541C 0.02 deleterious(0) probably_damaging(1) TCGA-60-2707-01 14 88417033 88417033 T C GALC Silent p.Q407Q 0.19 TCGA-60-2707-01 15 101592036 101592036 A T LRRK1 Missense_Mutation p.Y1187F 0.26 deleterious(0.01) probably_damaging(0.941) TCGA-60-2707-01 15 28518105 28518105 G T HERC2 Silent p.P282P 0.11 TCGA-60-2707-01 15 56981653 56981653 G T ZNF280D Nonsense_Mutation p.S172* 0.14 TCGA-60-2707-01 15 74176528 74176528 G C TBC1D21 Missense_Mutation p.K103N 0.28 deleterious(0.04) probably_damaging(0.925) TCGA-60-2707-01 15 85405926 85405926 G A ALPK3 Missense_Mutation p.C1599Y 0.31 tolerated(0.55) probably_damaging(0.999) TCGA-60-2707-01 15 85406841 85406841 G T ALPK3 Missense_Mutation p.R1692L 0.20 deleterious(0) probably_damaging(0.949) TCGA-60-2707-01 15 93498730 93498730 C G CHD2 Silent p.L599L 0.06 TCGA-60-2707-01 16 1605133 1605133 G A TMEM204 3'UTR 0.27 TCGA-60-2707-01 16 18870975 18870975 G C SMG1 Missense_Mutation p.Q1286E 0.08 tolerated(0.39) possibly_damaging(0.68) TCGA-60-2707-01 16 20441054 20441054 T C ACSM5 Silent p.P352P 0.25 TCGA-60-2707-01 16 70166087 70166087 G A PDPR Missense_Mutation p.R294Q 0.05 deleterious(0) probably_damaging(0.997) TCGA-60-2707-01 16 72166728 72166728 C T PMFBP1 Missense_Mutation p.A456T 0.07 tolerated(0.21) benign(0.156) TCGA-60-2707-01 16 82033204 82033204 G C SDR42E1 Missense_Mutation p.H232D 0.28 deleterious(0) probably_damaging(0.996) TCGA-60-2707-01 16 83520150 83520150 T C CDH13 Missense_Mutation p.Y331H 0.31 deleterious(0) probably_damaging(1) TCGA-60-2707-01 17 27044298 27044298 T C RAB34 Missense_Mutation p.K53R 0.42 tolerated_low_confidence(0.72) benign(0.001) TCGA-60-2707-01 17 29679291 29679291 C T NF1 Nonsense_Mutation p.Q2492* 0.04 TCGA-60-2707-01 17 30621462 30621462 G C RHBDL3 Splice_Site p.X223_splice 0.28 TCGA-60-2707-01 17 39503459 39503459 G A KRT33A Missense_Mutation p.R202C 0.06 deleterious(0.02) benign(0.351) TCGA-60-2707-01 17 42332032 42332032 T C SLC4A1 Splice_Site p.X631_splice 0.29 TCGA-60-2707-01 17 4841830 4841830 C G SLC25A11 Missense_Mutation p.E175Q 0.03 deleterious(0) probably_damaging(0.999) TCGA-60-2707-01 17 66364803 66364803 C T ARSG Silent p.L273L 0.05 TCGA-60-2707-01 17 71189264 71189264 C G COG1 Missense_Mutation p.A19G 0.30 deleterious(0.04) possibly_damaging(0.599) TCGA-60-2707-01 17 7579585 7579585 G - TP53 Frame_Shift_Del p.L35Cfs*9 0.37 TCGA-60-2707-01 18 32462135 32462135 G C DTNA Silent p.L668L 0.04 TCGA-60-2707-01 1 11259718 11259718 C G MTOR Silent p.L1329L 0.25 TCGA-60-2707-01 1 157740401 157740401 C G FCRL2 Silent p.L36L 0.03 TCGA-60-2707-01 1 158597422 158597422 A G SPTA1 Missense_Mutation p.L1886P 0.23 deleterious(0) probably_damaging(0.988) TCGA-60-2707-01 1 161042609 161042609 C T PVRL4 Missense_Mutation p.E459K 0.32 deleterious(0.01) possibly_damaging(0.827) TCGA-60-2707-01 1 176668640 176668640 G T PAPPA2 Missense_Mutation p.V1051L 0.27 tolerated(1) benign(0.01) TCGA-60-2707-01 1 186321214 186321214 T A TPR Missense_Mutation p.K788M 0.35 possibly_damaging(0.781) TCGA-60-2707-01 1 19501466 19501466 C T UBR4 Silent p.L945L 0.04 TCGA-60-2707-01 1 19501471 19501471 C T UBR4 Missense_Mutation p.D944N 0.04 benign(0.013) TCGA-60-2707-01 1 197024901 197024901 C T F13B Missense_Mutation p.G433E 0.09 deleterious(0.02) probably_damaging(1) TCGA-60-2707-01 1 197896900 197896900 G T LHX9 Missense_Mutation p.G305C 0.24 deleterious(0) probably_damaging(1) TCGA-60-2707-01 1 204403630 204403630 T C PIK3C2B Missense_Mutation p.H1208R 0.39 deleterious(0) probably_damaging(0.999) TCGA-60-2707-01 1 20945198 20945198 C A CDA 3'UTR 0.18 TCGA-60-2707-01 1 233296087 233296087 C T PCNXL2 Nonsense_Mutation p.W1153* 0.21 TCGA-60-2707-01 1 233296088 233296088 C A PCNXL2 Missense_Mutation p.W1153L 0.21 deleterious(0) probably_damaging(0.973) TCGA-60-2707-01 1 247712512 247712512 C A GCSAML Silent p.R7R 0.31 TCGA-60-2707-01 1 32167759 32167759 G A COL16A1 Silent p.L12L 0.10 TCGA-60-2707-01 1 3319418 3319418 G T PRDM16 Missense_Mutation p.R247L 0.38 deleterious(0.01) possibly_damaging(0.836) TCGA-60-2707-01 1 34190222 34190222 C A CSMD2 Missense_Mutation p.A887S 0.41 tolerated(1) benign(0.358) TCGA-60-2707-01 1 3672112 3672112 C A CCDC27 Silent p.G178G 0.16 TCGA-60-2707-01 1 86964384 86964384 C A CLCA1 Missense_Mutation p.P748H 0.34 deleterious(0.03) possibly_damaging(0.868) TCGA-60-2707-01 1 92941667 92941667 G T GFI1 Missense_Mutation p.F396L 0.36 deleterious(0) probably_damaging(0.996) TCGA-60-2707-01 20 1457926 1457926 T C SIRPB2 Intron 0.29 TCGA-60-2707-01 20 30784525 30784525 G A PLAGL2 Silent p.L407L 0.08 TCGA-60-2707-01 20 62378374 62378374 G A ZBTB46 Missense_Mutation p.A560V 0.07 tolerated(0.57) benign(0.015) TCGA-60-2707-01 21 34861439 34861439 C G DNAJC28 Missense_Mutation p.D88H 0.04 deleterious(0) probably_damaging(0.989) TCGA-60-2707-01 21 47532209 47532209 G C COL6A2 Missense_Mutation p.Q144H 0.13 deleterious(0.04) benign(0.052) TCGA-60-2707-01 22 22712517 22712517 C T IGLV1-47 Missense_Mutation p.S87F 0.05 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-60-2707-01 22 39224304 39224304 C T NPTXR Missense_Mutation p.E280K 0.27 deleterious(0.01) possibly_damaging(0.82) TCGA-60-2707-01 2 114483083 114483083 T C SLC35F5 Silent p.L374L 0.35 TCGA-60-2707-01 2 149226468 149226468 C G MBD5 Missense_Mutation p.T319S 0.04 tolerated(0.73) benign(0.024) TCGA-60-2707-01 2 149226481 149226481 A G MBD5 Missense_Mutation p.I323M 0.04 tolerated(1) possibly_damaging(0.506) TCGA-60-2707-01 2 169781299 169781299 G C ABCB11 Missense_Mutation p.N1211K 0.25 tolerated(0.54) possibly_damaging(0.664) TCGA-60-2707-01 2 198498484 198498484 G T RFTN2 Missense_Mutation p.Q226K 0.22 tolerated(1) benign(0.001) TCGA-60-2707-01 2 232325142 232325142 C T NCL Intron 0.26 TCGA-60-2707-01 2 236653377 236653377 C T AGAP1 Silent p.F144F 0.04 TCGA-60-2707-01 2 236653401 236653401 C G AGAP1 Missense_Mutation p.F152L 0.04 deleterious(0.02) probably_damaging(0.995) TCGA-60-2707-01 2 58366799 58366799 A T VRK2 Splice_Site p.X286_splice 0.20 TCGA-60-2707-01 2 62363201 62363201 C T COMMD1 3'UTR 0.29 TCGA-60-2707-01 2 90060900 90060900 G T IGKV6D-21 Missense_Mutation p.G83C 0.26 deleterious(0) probably_damaging(1) TCGA-60-2707-01 2 98853155 98853155 G T VWA3B Missense_Mutation p.V879F 0.29 deleterious(0.03) benign(0.077) TCGA-60-2707-01 3 10861396 10861396 G T SLC6A11 Splice_Site p.X131_splice 0.34 TCGA-60-2707-01 3 10861397 10861397 G T SLC6A11 Missense_Mutation p.G131V 0.35 deleterious(0) possibly_damaging(0.876) TCGA-60-2707-01 3 149087694 149087694 G C TM4SF1 Intron 0.18 TCGA-60-2707-01 3 151067921 151067921 A G MED12L Silent p.A740A 0.22 TCGA-60-2707-01 3 56675432 56675432 G A FAM208A Missense_Mutation p.S855F 0.04 deleterious(0.01) possibly_damaging(0.667) TCGA-60-2707-01 3 66449460 66449460 A G LRIG1 Missense_Mutation p.L389P 0.47 deleterious(0) probably_damaging(1) TCGA-60-2707-01 3 98109948 98109948 G C OR5K3 Missense_Mutation p.G147R 0.16 tolerated(0.34) probably_damaging(0.961) TCGA-60-2707-01 3 98109949 98109949 G T OR5K3 Missense_Mutation p.G147V 0.18 tolerated(0.7) benign(0.367) TCGA-60-2707-01 4 100231999 100231999 T C ADH1B Silent p.S342S 0.21 TCGA-60-2707-01 4 125591827 125591827 G T ANKRD50 Missense_Mutation p.Q869K 0.23 tolerated(0.87) benign(0.262) TCGA-60-2707-01 4 159593507 159593507 G A ETFDH 5'UTR 0.24 TCGA-60-2707-01 4 185940008 185940008 G A HELT 5'Flank 0.27 TCGA-60-2707-01 4 186544783 186544783 G A SORBS2 Silent p.S696S 0.22 TCGA-60-2707-01 4 71698085 71698085 C T GRSF1 Silent p.V251V 0.16 TCGA-60-2707-01 4 76924732 76924732 T C CXCL9 3'UTR 0.25 TCGA-60-2707-01 4 96762470 96762470 G T PDHA2 3'UTR 0.17 TCGA-60-2707-01 4 96762471 96762471 G T PDHA2 3'UTR 0.17 TCGA-60-2707-01 5 33576688 33576688 G A ADAMTS12 Missense_Mutation p.T1148I 0.20 deleterious(0.01) possibly_damaging(0.634) TCGA-60-2707-01 5 33891974 33891974 G C ADAMTS12 5'UTR 0.11 TCGA-60-2707-01 5 37148352 37148352 T C C5orf42 Missense_Mutation p.I2744V 0.41 tolerated(0.56) benign(0.002) TCGA-60-2707-01 5 44305140 44305140 T A FGF10 Missense_Mutation p.K195I 0.06 deleterious(0.01) probably_damaging(0.973) TCGA-60-2707-01 5 5303866 5303866 C T ADAMTS16 Missense_Mutation p.S1058F 0.06 deleterious(0) probably_damaging(0.992) TCGA-60-2707-01 6 106978181 106978181 A T AIM1 Missense_Mutation p.H1162L 0.19 deleterious(0.05) probably_damaging(1) TCGA-60-2707-01 6 112389555 112389555 T C WISP3 Missense_Mutation p.L264P 0.24 deleterious(0) probably_damaging(0.999) TCGA-60-2707-01 6 152777171 152777171 T C SYNE1 Silent p.L859L 0.17 TCGA-60-2707-01 6 4032677 4032677 C T PRPF4B Missense_Mutation p.S309F 0.12 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-60-2707-01 6 53883791 53883791 C G MLIP 5'UTR 0.18 TCGA-60-2707-01 6 75806966 75806966 T C COL12A1 Intron 0.19 TCGA-60-2707-01 7 121944169 121944169 G T FEZF1 Missense_Mutation p.A108E 0.40 tolerated_low_confidence(0.22) benign(0.002) TCGA-60-2707-01 7 134853679 134853679 G A C7orf49 5'UTR 0.17 TCGA-60-2707-01 7 13949273 13949273 G C ETV1 Silent p.V308V 0.06 TCGA-60-2707-01 7 149522435 149522435 G A SSPO RNA 0.24 TCGA-60-2707-01 7 150069612 150069612 G T REPIN1 Nonsense_Mutation p.E485* 0.44 TCGA-60-2707-01 7 34094781 34094781 A G BMPER Missense_Mutation p.T265A 0.22 deleterious(0) probably_damaging(0.992) TCGA-60-2707-01 8 101270912 101270912 C T RNF19A Missense_Mutation p.E797K 0.06 deleterious_low_confidence(0.01) benign(0.045) TCGA-60-2707-01 8 144885849 144885849 C T SCRIB Missense_Mutation p.D1128N 0.45 probably_damaging(0.968) TCGA-60-2707-01 8 67488371 67488371 G C MYBL1 Silent p.L447L 0.10 TCGA-60-2707-01 8 89068417 89068417 C A MMP16 Missense_Mutation p.G438C 0.34 deleterious(0.03) possibly_damaging(0.789) TCGA-60-2707-01 8 92378924 92378924 G T SLC26A7 Missense_Mutation p.Q535H 0.34 tolerated(0.08) benign(0.005) TCGA-60-2707-01 9 112898755 112898755 G T PALM2-AKAP2 Nonsense_Mutation p.E311* 0.31 TCGA-60-2707-01 9 125719300 125719300 A G RABGAP1 5'UTR 0.27 TCGA-60-2707-01 9 77422954 77422954 T C TRPM6 Missense_Mutation p.Y545C 0.03 tolerated(0.12) benign(0.264) TCGA-60-2707-01 9 79321922 79321922 G C PRUNE2 Missense_Mutation p.F1756L 0.03 tolerated(0.23) benign(0.006) TCGA-60-2707-01 9 94991310 94991310 C G IARS Missense_Mutation p.E1128Q 0.05 tolerated(0.5) benign(0.001) TCGA-60-2707-01 X 100911754 100911754 G A ARMCX2 Missense_Mutation p.A274V 0.16 tolerated_low_confidence(0.09) benign(0.007) TCGA-60-2707-01 X 154774821 154774821 G C TMLHE Silent p.V39V 0.08 TCGA-60-2707-01 X 48652460 48652460 C T GATA1 Silent p.S377S 0.68 TCGA-60-2707-01 X 57515355 57515355 G A FAAH2 Missense_Mutation p.G530E 0.05 deleterious(0) possibly_damaging(0.885) TCGA-60-2708-01 10 14816587 14816587 C G FAM107B Missense_Mutation p.A26P 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-60-2708-01 10 16526710 16526710 G T PTER Silent p.T109T 0.62 TCGA-60-2708-01 10 26855898 26855898 G C APBB1IP Missense_Mutation p.K494N 0.57 tolerated(0.08) benign(0.034) TCGA-60-2708-01 10 29770543 29770543 C G SVIL Missense_Mutation p.E1690D 0.02 tolerated(0.18) benign(0.013) TCGA-60-2708-01 10 43127419 43127419 G C ZNF33B Missense_Mutation p.P70A 0.03 deleterious(0.03) probably_damaging(0.996) TCGA-60-2708-01 10 48370489 48370489 C T ZNF488 5'UTR 0.44 TCGA-60-2708-01 10 48429014 48429014 G T GDF10 Missense_Mutation p.A291D 0.73 tolerated(0.63) benign(0.039) TCGA-60-2708-01 10 75864998 75865001 CCGA - VCL Frame_Shift_Del p.S774Wfs*9 0.29 TCGA-60-2708-01 11 105789538 105789538 A G GRIA4 Missense_Mutation p.H457R 0.30 tolerated(0.1) probably_damaging(0.964) TCGA-60-2708-01 11 10825569 10825569 G A EIF4G2 Silent p.L193L 0.24 TCGA-60-2708-01 11 108398896 108398896 T G EXPH5 Silent p.A153A 0.36 TCGA-60-2708-01 11 1093584 1093584 A T MUC2 Silent p.A1801A 0.35 TCGA-60-2708-01 11 118955631 118955631 A T HMBS 5'UTR 0.21 TCGA-60-2708-01 11 123847651 123847651 G T OR10S1 Silent p.R250R 0.38 TCGA-60-2708-01 11 123900704 123900704 C G OR10G8 Missense_Mutation p.I125M 0.33 deleterious(0) probably_damaging(0.91) TCGA-60-2708-01 11 281741 281741 A C NLRP6 Silent p.G669G 0.25 TCGA-60-2708-01 11 46397475 46397475 A G DGKZ Missense_Mutation p.Y850C 0.55 deleterious(0.03) probably_damaging(0.995) TCGA-60-2708-01 11 5462167 5462167 T C OR51I1 Missense_Mutation p.D193G 0.24 deleterious(0) probably_damaging(1) TCGA-60-2708-01 11 5474866 5474866 C A OR51I2 Silent p.R50R 0.28 TCGA-60-2708-01 11 55681828 55681828 A T OR5W2 Silent p.T77T 0.35 TCGA-60-2708-01 11 56057972 56057972 C A OR8H1 Missense_Mutation p.M189I 0.32 deleterious(0.02) benign(0.003) TCGA-60-2708-01 11 56309961 56309961 T C OR5M11 Missense_Mutation p.Y258C 0.37 deleterious(0) probably_damaging(0.933) TCGA-60-2708-01 11 59271632 59271632 T A OR4D11 Missense_Mutation p.L195H 0.27 deleterious(0) probably_damaging(0.986) TCGA-60-2708-01 11 66468296 66468296 C T SPTBN2 Missense_Mutation p.E1092K 0.26 deleterious(0) benign(0.415) TCGA-60-2708-01 11 82880157 82880157 C T PCF11 Missense_Mutation p.A927V 0.37 tolerated(0.09) benign(0) TCGA-60-2708-01 11 85723413 85723413 T - PICALM Frame_Shift_Del p.N190Mfs*3 0.24 TCGA-60-2708-01 12 119583288 119583288 T G SRRM4 Missense_Mutation p.S292A 0.25 tolerated_low_confidence(0.05) possibly_damaging(0.817) TCGA-60-2708-01 12 132508341 132508341 A T EP400 Silent p.I1570I 0.39 TCGA-60-2708-01 12 133350809 133350809 A T GOLGA3 Missense_Mutation p.L1414Q 0.31 deleterious(0) probably_damaging(1) TCGA-60-2708-01 12 16704154 16704154 G C LMO3 3'UTR 0.33 TCGA-60-2708-01 12 26709222 26709222 T C ITPR2 Silent p.E1636E 0.36 TCGA-60-2708-01 12 33579079 33579079 G T SYT10 Nonsense_Mutation p.S168* 0.31 TCGA-60-2708-01 12 39763838 39763839 - A KIF21A Intron 0.16 TCGA-60-2708-01 12 43925955 43925955 G C ADAMTS20 Missense_Mutation p.P166R 0.12 deleterious(0) probably_damaging(1) TCGA-60-2708-01 12 49719645 49719645 G T TROAP Missense_Mutation p.C204F 0.30 tolerated(0.27) benign(0.005) TCGA-60-2708-01 12 50264382 50264382 G T FAIM2 Missense_Mutation p.P286T 0.39 deleterious(0) probably_damaging(1) TCGA-60-2708-01 12 52884946 52884946 C T KRT6A Missense_Mutation p.E256K 0.33 deleterious(0) probably_damaging(1) TCGA-60-2708-01 12 54350155 54350155 C T HOXC12 Silent p.R218R 0.37 TCGA-60-2708-01 12 54367289 54367289 C G HOXC11 Missense_Mutation p.S88R 0.35 deleterious(0.01) possibly_damaging(0.524) TCGA-60-2708-01 12 56221155 56221155 G A DNAJC14 Nonsense_Mutation p.R430* 0.35 TCGA-60-2708-01 12 56754896 56754896 C T APOF 3'UTR 0.25 TCGA-60-2708-01 12 7241522 7241522 C T C1R Missense_Mutation p.D276N 0.42 tolerated(0.15) benign(0.157) TCGA-60-2708-01 13 47409668 47409668 A T HTR2A Missense_Mutation p.F240L 0.50 tolerated(0.41) probably_damaging(0.978) TCGA-60-2708-01 13 52520501 52520501 C T ATP7B Silent p.T993T 0.70 TCGA-60-2708-01 14 102605647 102605647 T C HSP90AA1 Missense_Mutation p.D32G 0.38 unknown(0) TCGA-60-2708-01 14 19377759 19377759 G T OR11H12 Missense_Mutation p.G56W 0.72 deleterious(0.01) possibly_damaging(0.623) TCGA-60-2708-01 14 19563560 19563560 A C POTEG Intron 0.71 TCGA-60-2708-01 14 21991560 21991560 C G SALL2 Missense_Mutation p.E768Q 0.26 deleterious(0.04) benign(0.34) TCGA-60-2708-01 14 23444075 23444075 G A AJUBA Silent p.A465A 0.78 TCGA-60-2708-01 14 52534597 52534597 G A NID2 Silent p.R171R 0.05 TCGA-60-2708-01 14 60063313 60063313 G T RTN1 3'UTR 0.71 TCGA-60-2708-01 14 60574806 60574806 G T PCNXL4 Intron 0.33 TCGA-60-2708-01 14 70925402 70925402 A T ADAM21 Missense_Mutation p.N396Y 0.71 tolerated(0.89) benign(0.075) TCGA-60-2708-01 14 72200451 72200451 C T SIPA1L1 Missense_Mutation p.P1665S 0.41 deleterious(0) probably_damaging(0.996) TCGA-60-2708-01 14 74753465 74753465 C T ABCD4 Missense_Mutation p.R564H 0.10 tolerated(0.08) benign(0.009) TCGA-60-2708-01 14 86088921 86088921 A G FLRT2 Missense_Mutation p.M355V 0.73 tolerated(0.32) benign(0.001) TCGA-60-2708-01 15 102244059 102244059 T C TARSL2 Intron 0.54 TCGA-60-2708-01 15 22962496 22962496 A T CYFIP1 Missense_Mutation p.H739L 0.43 tolerated(0.73) benign(0.001) TCGA-60-2708-01 15 45491044 45491044 T A SHF Nonsense_Mutation p.K77* 0.60 TCGA-60-2708-01 15 77471208 77471208 C G PEAK1 Missense_Mutation p.E1021Q 0.23 tolerated(0.22) benign(0.006) TCGA-60-2708-01 15 82523274 82523274 C G EFTUD1 Missense_Mutation p.G257A 0.10 deleterious(0) probably_damaging(0.967) TCGA-60-2708-01 16 14720998 14720998 T C PARN Missense_Mutation p.N98D 0.56 tolerated(0.15) benign(0.014) TCGA-60-2708-01 16 34712307 34712307 C A RP11-80F22.9 RNA 0.32 TCGA-60-2708-01 16 67189189 67189189 C T TRADD Silent p.R146R 0.16 TCGA-60-2708-01 16 67866358 67866358 C A CENPT Missense_Mutation p.R67S 0.33 deleterious(0.01) benign(0.098) TCGA-60-2708-01 16 84158128 84158128 G A HSDL1 3'UTR 0.36 TCGA-60-2708-01 17 13980210 13980210 G A COX10 Silent p.K112K 0.57 TCGA-60-2708-01 17 21825572 21825572 C T FAM27L Intron 0.23 TCGA-60-2708-01 17 27437117 27437117 G A MYO18A Silent p.D1030D 0.24 TCGA-60-2708-01 17 29701119 29701119 G C NF1 Missense_Mutation p.Q2822H 0.20 deleterious_low_confidence(0.01) probably_damaging(0.965) TCGA-60-2708-01 17 39580033 39580033 C A KRT37 Missense_Mutation p.A186S 0.15 tolerated(0.13) benign(0.17) TCGA-60-2708-01 17 46257527 46257527 C T SKAP1 Missense_Mutation p.D239N 0.27 tolerated(0.12) benign(0.013) TCGA-60-2708-01 17 58543698 58543698 T C APPBP2 Missense_Mutation p.Y209C 0.45 deleterious(0) benign(0.371) TCGA-60-2708-01 17 7578467 7578469 TGC GG TP53 Frame_Shift_Del p.G154Afs*16 0.11 TCGA-60-2708-01 18 43531083 43531083 G C EPG5 Silent p.L458L 0.21 TCGA-60-2708-01 19 10419279 10419279 C T ZGLP1 Missense_Mutation p.A27T 0.06 deleterious_low_confidence(0.03) benign(0.01) TCGA-60-2708-01 19 13356036 13356036 A C CACNA1A Missense_Mutation p.V1637G 0.36 possibly_damaging(0.851) TCGA-60-2708-01 19 19344641 19344641 G C NCAN Silent p.G1021G 0.15 TCGA-60-2708-01 19 21992323 21992323 T - ZNF43 Frame_Shift_Del p.K172Nfs*18 0.24 TCGA-60-2708-01 19 41594403 41594403 G A CYP2A13 Silent p.V9V 0.15 TCGA-60-2708-01 19 50796886 50796886 A T MYH14 Missense_Mutation p.E1804V 0.28 deleterious(0) probably_damaging(0.989) TCGA-60-2708-01 19 53269323 53269323 G A ZNF600 Silent p.T562T 0.15 TCGA-60-2708-01 19 56466391 56466391 A C NLRP8 Missense_Mutation p.T323P 0.40 tolerated(0.17) benign(0.209) TCGA-60-2708-01 19 57641900 57641900 G C USP29 Missense_Mutation p.Q619H 0.18 tolerated(0.1) benign(0.019) TCGA-60-2708-01 1 110882542 110882543 TG - RBM15 Frame_Shift_Del p.L172Qfs*10 0.32 TCGA-60-2708-01 1 117910985 117910989 TTCAA - MAN1A2 Frame_Shift_Del p.S61Tfs*5 0.30 TCGA-60-2708-01 1 144863397 144863397 T C PDE4DIP Silent p.K2002K 0.22 TCGA-60-2708-01 1 152009414 152009414 G C S100A11 5'UTR 0.14 TCGA-60-2708-01 1 152191550 152191550 G A HRNR Missense_Mutation p.S852L 0.22 unknown(0) TCGA-60-2708-01 1 156618424 156618424 G A BCAN Silent p.Q278Q 0.20 TCGA-60-2708-01 1 160093152 160093161 CTTCCTGGCC - ATP1A2 Frame_Shift_Del p.F110Tfs*57 0.27 TCGA-60-2708-01 1 160389286 160389286 G A VANGL2 Silent p.V229V 0.19 TCGA-60-2708-01 1 161495444 161495444 G C HSPA6 Missense_Mutation p.Q332H 0.10 tolerated_low_confidence(0.05) benign(0.011) TCGA-60-2708-01 1 190067570 190067570 T A BRINP3 Missense_Mutation p.I627F 0.23 tolerated(0.4) possibly_damaging(0.617) TCGA-60-2708-01 1 196621187 196621187 A T CFH 5'UTR 0.46 TCGA-60-2708-01 1 201030449 201030449 G C CACNA1S Silent p.T1067T 0.20 TCGA-60-2708-01 1 203816789 203816789 G C ZC3H11A Missense_Mutation p.R507P 0.15 deleterious(0.04) benign(0.104) TCGA-60-2708-01 1 204438582 204438582 G C PIK3C2B Missense_Mutation p.P117A 0.46 tolerated_low_confidence(0.1) benign(0.265) TCGA-60-2708-01 1 205687487 205687487 T C NUCKS1 Missense_Mutation p.K218R 0.42 tolerated(0.12) possibly_damaging(0.486) TCGA-60-2708-01 1 214826228 214826228 A T CENPF Missense_Mutation p.S2740C 0.47 benign(0.001) TCGA-60-2708-01 1 225155469 225155469 G C DNAH14 Intron 0.28 TCGA-60-2708-01 1 226829751 226829751 G C ITPKB Missense_Mutation p.I774M 0.45 deleterious(0.03) possibly_damaging(0.594) TCGA-60-2708-01 1 228294381 228294381 C G MRPL55 3'Flank 0.23 TCGA-60-2708-01 1 237604779 237604779 G A RYR2 Missense_Mutation p.R389H 0.28 probably_damaging(0.999) TCGA-60-2708-01 1 247769642 247769642 A T OR2G3 Missense_Mutation p.Y252F 0.46 tolerated(0.21) possibly_damaging(0.766) TCGA-60-2708-01 1 248039548 248039548 A C TRIM58 Missense_Mutation p.E406D 0.22 tolerated(0.58) benign(0.001) TCGA-60-2708-01 1 248570350 248570350 A G OR2T1 Missense_Mutation p.K352R 0.16 tolerated(0.8) benign(0.005) TCGA-60-2708-01 1 53544621 53544621 T A PODN Missense_Mutation p.L528Q 0.55 deleterious(0) probably_damaging(0.997) TCGA-60-2708-01 1 54428065 54428065 G C LRRC42 Missense_Mutation p.E304Q 0.22 tolerated(0.22) possibly_damaging(0.571) TCGA-60-2708-01 1 57610988 57610988 C A DAB1 Missense_Mutation p.C61F 0.63 deleterious(0) probably_damaging(1) TCGA-60-2708-01 1 70257828 70257828 G C LRRC7 Missense_Mutation p.D98H 0.52 deleterious(0) probably_damaging(1) TCGA-60-2708-01 1 70820859 70820859 G A HHLA3 Intron 0.41 TCGA-60-2708-01 1 74649223 74649223 C A LRRIQ3 Missense_Mutation p.C49F 0.59 tolerated(0.05) benign(0.06) TCGA-60-2708-01 20 18470558 18470558 G A RBBP9 Silent p.D137D 0.52 TCGA-60-2708-01 20 2577827 2577827 C T TMC2 Silent p.G369G 0.31 TCGA-60-2708-01 20 30071999 30071999 C T REM1 Silent p.F221F 0.10 TCGA-60-2708-01 20 30689285 30689285 A G HCK Missense_Mutation p.Y515C 0.25 deleterious(0.01) possibly_damaging(0.9) TCGA-60-2708-01 20 32438759 32438759 G C CHMP4B Missense_Mutation p.D124H 0.07 deleterious(0) probably_damaging(0.981) TCGA-60-2708-01 20 32438855 32438855 G C CHMP4B Missense_Mutation p.G156R 0.05 deleterious(0.03) possibly_damaging(0.905) TCGA-60-2708-01 20 3660177 3660177 C A ADAM33 Missense_Mutation p.D47Y 0.24 deleterious(0.01) probably_damaging(0.992) TCGA-60-2708-01 20 47835940 47835940 C T DDX27 Silent p.A16A 0.36 TCGA-60-2708-01 20 48523016 48523016 T A SPATA2 Missense_Mutation p.S235C 0.16 tolerated(0.07) probably_damaging(0.988) TCGA-60-2708-01 20 55027782 55027782 G T CASS4 Missense_Mutation p.R517L 0.30 deleterious(0) benign(0.254) TCGA-60-2708-01 20 57289620 57289620 G A NPEPL1 Missense_Mutation p.R436Q 0.33 deleterious(0.01) probably_damaging(0.913) TCGA-60-2708-01 20 61982049 61982049 G A CHRNA4 Silent p.V238V 0.38 TCGA-60-2708-01 21 31062214 31062214 G C GRIK1 Silent p.L126L 0.03 TCGA-60-2708-01 22 16258187 16258187 C G POTEH Nonstop_Mutation p.*546Sext*4 0.36 TCGA-60-2708-01 22 22293870 22293870 G A PPM1F Intron 0.06 TCGA-60-2708-01 22 24584086 24584086 C T SUSD2 Missense_Mutation p.T775I 0.06 tolerated(0.06) benign(0.209) TCGA-60-2708-01 22 36960438 36960438 A T CACNG2 Missense_Mutation p.L311H 0.28 deleterious(0) benign(0.088) TCGA-60-2708-01 22 50439241 50439241 G A IL17REL Missense_Mutation p.T54M 0.31 tolerated(0.07) benign(0.33) TCGA-60-2708-01 2 139326626 139326626 A T SPOPL Silent p.P385P 0.48 TCGA-60-2708-01 2 169023809 169023809 C A STK39 Missense_Mutation p.G144C 0.55 deleterious(0) probably_damaging(1) TCGA-60-2708-01 2 179393337 179393343 TTAATAT - TTN Frame_Shift_Del p.N35712Mfs*37 0.50 TCGA-60-2708-01 2 179399114 179399114 C T TTN Silent p.K34076K 0.19 TCGA-60-2708-01 2 190531181 190531181 T - ASNSD1 Frame_Shift_Del p.L109Cfs*107 0.18 TCGA-60-2708-01 2 191845378 191845378 C T STAT1 Missense_Mutation p.D534N 0.19 tolerated(0.15) possibly_damaging(0.54) TCGA-60-2708-01 2 198950527 198950527 G A PLCL1 Silent p.S762S 0.24 TCGA-60-2708-01 2 201515770 201515770 T A AOX1 Missense_Mutation p.I974N 0.48 tolerated(0.49) benign(0.107) TCGA-60-2708-01 2 207014567 207014592 AGGCACATCCTGCAGTTTCCAGCAAC - NDUFS1 Frame_Shift_Del p.V85Cfs*2 0.12 TCGA-60-2708-01 2 232263482 232263482 G A B3GNT7 Missense_Mutation p.G351D 0.14 deleterious(0) probably_damaging(1) TCGA-60-2708-01 2 44032358 44032358 C T DYNC2LI1 Silent p.V322V 0.44 TCGA-60-2708-01 2 67630366 67630366 A T ETAA1 Silent p.T184T 0.35 TCGA-60-2708-01 2 73993667 73993667 G A DUSP11 Silent p.L271L 0.26 TCGA-60-2708-01 2 86769390 86769390 C G RNF103-CHMP3 Missense_Mutation p.D60H 0.13 deleterious(0) possibly_damaging(0.903) TCGA-60-2708-01 2 89999549 89999549 A T IGKV2D-28 Silent p.L117L 0.49 TCGA-60-2708-01 2 99013489 99013489 C T CNGA3 Missense_Mutation p.A619V 0.22 tolerated(0.06) benign(0.07) TCGA-60-2708-01 3 10183766 10183766 C G VHL Missense_Mutation p.R79G 0.36 deleterious(0.01) possibly_damaging(0.823) TCGA-60-2708-01 3 124351436 124351436 G T KALRN Missense_Mutation p.K85N 0.33 deleterious(0) probably_damaging(0.973) TCGA-60-2708-01 3 140407277 140407277 C A TRIM42 Missense_Mutation p.Q585K 0.35 tolerated(0.36) benign(0.424) TCGA-60-2708-01 3 179616027 179616027 C T PEX5L Missense_Mutation p.G34D 0.33 tolerated_low_confidence(0.77) unknown(0) TCGA-60-2708-01 3 3081782 3081782 A G CNTN4 Missense_Mutation p.Y742C 0.46 tolerated(0.15) benign(0.135) TCGA-60-2708-01 3 37032748 37032748 T C EPM2AIP1 Silent p.P607P 0.39 TCGA-60-2708-01 3 39185792 39185792 G A CSRNP1 Nonsense_Mutation p.R206* 0.51 TCGA-60-2708-01 3 42729785 42729785 A G KLHL40 Missense_Mutation p.Y435C 0.48 deleterious(0) probably_damaging(0.921) TCGA-60-2708-01 3 44882596 44882596 C A KIF15 Missense_Mutation p.H1151N 0.32 tolerated(1) benign(0.176) TCGA-60-2708-01 3 97660112 97660112 C G CRYBG3 Missense_Mutation p.Q928E 0.19 deleterious(0) probably_damaging(0.998) TCGA-60-2708-01 4 159559192 159559192 A G RXFP1 Missense_Mutation p.Q335R 0.20 tolerated(0.32) benign(0.001) TCGA-60-2708-01 4 188924632 188924632 A G ZFP42 Missense_Mutation p.K224R 0.21 tolerated(0.26) benign(0.009) TCGA-60-2708-01 4 65275039 65275039 C T TECRL Missense_Mutation p.E11K 0.53 deleterious_low_confidence(0.04) benign(0.008) TCGA-60-2708-01 4 995294 995294 G A IDUA Missense_Mutation p.E178K 0.23 deleterious(0) probably_damaging(0.939) TCGA-60-2708-01 4 995327 995327 G C IDUA Missense_Mutation p.D189H 0.26 deleterious(0) probably_damaging(0.999) TCGA-60-2708-01 5 131008213 131008213 C A FNIP1 Nonsense_Mutation p.G642* 0.53 TCGA-60-2708-01 5 132232283 132232283 G T AFF4 Nonsense_Mutation p.S680* 0.56 TCGA-60-2708-01 5 140481455 140481455 G A PCDHB3 Missense_Mutation p.A408T 0.32 tolerated_low_confidence(0.13) benign(0.012) TCGA-60-2708-01 5 140537146 140537146 G A PCDHB17 Missense_Mutation p.A524T 0.57 tolerated_low_confidence(0.05) possibly_damaging(0.63) TCGA-60-2708-01 5 140573030 140573030 T G PCDHB10 Missense_Mutation p.F302C 0.29 deleterious_low_confidence(0.01) benign(0.085) TCGA-60-2708-01 5 140740522 140740522 A C PCDHGB2 Missense_Mutation p.N274H 0.22 deleterious(0.02) possibly_damaging(0.739) TCGA-60-2708-01 5 141033464 141033464 T A ARAP3 3'UTR 0.62 TCGA-60-2708-01 5 149213089 149213089 G T PPARGC1B Nonsense_Mutation p.E485* 0.89 TCGA-60-2708-01 5 159680620 159680620 C A CCNJL Missense_Mutation p.R358L 0.59 deleterious(0.01) possibly_damaging(0.738) TCGA-60-2708-01 5 169031302 169031302 G C SPDL1 3'UTR 0.55 TCGA-60-2708-01 5 175391956 175391956 G A THOC3 Silent p.L209L 0.16 TCGA-60-2708-01 5 41313840 41313840 G T PLCXD3 Missense_Mutation p.T282K 0.56 tolerated(0.74) benign(0.081) TCGA-60-2708-01 6 117609893 117609893 C A ROS1 Missense_Mutation p.R2269L 0.23 deleterious_low_confidence(0.01) benign(0.01) TCGA-60-2708-01 6 131276358 131276358 G A EPB41L2 Nonsense_Mutation p.Q198* 0.12 TCGA-60-2708-01 6 131995401 131995401 G T ENPP3 Missense_Mutation p.A248S 0.16 tolerated(0.75) benign(0.062) TCGA-60-2708-01 6 138531058 138531058 G A KIAA1244 Silent p.S77S 0.27 TCGA-60-2708-01 6 146244844 146244844 C T SHPRH Silent p.Q1160Q 0.42 TCGA-60-2708-01 6 157522135 157522135 T C ARID1B Silent p.N1469N 0.39 TCGA-60-2708-01 6 169053815 169053815 G A SMOC2 Missense_Mutation p.V409M 0.19 deleterious(0.04) benign(0.025) TCGA-60-2708-01 6 25917239 25917239 A T SLC17A2 Missense_Mutation p.S242R 0.29 deleterious(0.02) possibly_damaging(0.464) TCGA-60-2708-01 6 26200140 26200140 C A HIST1H2BF Silent p.A118A 0.30 TCGA-60-2708-01 6 26252030 26252035 CCGACA - HIST1H2BH In_Frame_Del p.D52_T53del 0.08 TCGA-60-2708-01 6 31828353 31828353 C A NEU1 Missense_Mutation p.G221W 0.25 deleterious(0) probably_damaging(1) TCGA-60-2708-01 6 33408702 33408702 C T SYNGAP1 Missense_Mutation p.L625F 0.09 deleterious(0.01) probably_damaging(1) TCGA-60-2708-01 6 36100432 36100432 C T MAPK13 Missense_Mutation p.S95F 0.09 tolerated(0.07) possibly_damaging(0.533) TCGA-60-2708-01 6 4032628 4032628 A G PRPF4B Missense_Mutation p.R293G 0.32 deleterious_low_confidence(0) benign(0.344) TCGA-60-2708-01 6 43220491 43220491 G T TTBK1 Silent p.G41G 0.34 TCGA-60-2708-01 6 74363571 74363571 G A SLC17A5 Silent p.G13G 0.20 TCGA-60-2708-01 6 87969104 87969104 A G ZNF292 Silent p.L1919L 0.40 TCGA-60-2708-01 6 97053783 97053783 C G FHL5 Missense_Mutation p.R114G 0.27 deleterious(0) probably_damaging(1) TCGA-60-2708-01 7 100179992 100179992 C G LRCH4 Missense_Mutation p.R104T 0.12 deleterious(0) possibly_damaging(0.688) TCGA-60-2708-01 7 107621203 107621203 C A LAMB1 Nonsense_Mutation p.G244* 0.36 TCGA-60-2708-01 7 135048672 135048674 TGT - CNOT4 In_Frame_Del p.N591del 0.44 TCGA-60-2708-01 7 135661836 135661836 C G MTPN Missense_Mutation p.E5Q 0.28 tolerated(0.1) benign(0.406) TCGA-60-2708-01 7 143657910 143657910 C A OR2F1 Missense_Mutation p.P283T 0.39 deleterious(0) probably_damaging(1) TCGA-60-2708-01 7 149510823 149510823 C A SSPO RNA 0.31 TCGA-60-2708-01 7 150754047 150754047 C T CDK5 Missense_Mutation p.A48T 0.38 deleterious(0.01) probably_damaging(1) TCGA-60-2708-01 7 17833533 17833533 T C SNX13 3'UTR 0.17 TCGA-60-2708-01 7 30092432 30092432 A G PLEKHA8 Missense_Mutation p.E249G 0.32 tolerated(0.06) benign(0.04) TCGA-60-2708-01 7 38768321 38768321 C T VPS41 Missense_Mutation p.R777Q 0.18 tolerated(0.06) benign(0.246) TCGA-60-2708-01 7 43484216 43484216 C A HECW1 Missense_Mutation p.T482N 0.42 tolerated_low_confidence(0.55) benign(0.016) TCGA-60-2708-01 7 43546832 43546832 T A HECW1 Missense_Mutation p.F1243Y 0.44 tolerated(1) benign(0.002) TCGA-60-2708-01 7 45701693 45701693 G T ADCY1 Silent p.P495P 0.39 TCGA-60-2708-01 7 48318575 48318575 T C ABCA13 Missense_Mutation p.L2595P 0.39 benign(0.059) TCGA-60-2708-01 7 5105028 5105028 A G RBAK Silent p.G647G 0.05 TCGA-60-2708-01 7 55241711 55241711 C G EGFR Missense_Mutation p.S720C 0.04 deleterious(0) probably_damaging(0.996) TCGA-60-2708-01 7 6078192 6078192 G - EIF2AK1 Frame_Shift_Del p.C411Vfs*17 0.34 TCGA-60-2708-01 7 65617210 65617210 G T CRCP Nonsense_Mutation p.E105* 0.20 TCGA-60-2708-01 7 87011274 87011274 G C CROT Missense_Mutation p.D371H 0.11 tolerated(0.2) benign(0.183) TCGA-60-2708-01 7 87792411 87792411 A G ADAM22 Silent p.L664L 0.32 TCGA-60-2708-01 8 105361153 105361153 A T DCSTAMP Missense_Mutation p.M125L 0.33 deleterious(0.02) benign(0.083) TCGA-60-2708-01 8 113697899 113697899 C A CSMD3 Missense_Mutation p.G740W 0.22 deleterious(0.01) probably_damaging(1) TCGA-60-2708-01 8 132052079 132052079 T C ADCY8 Silent p.E167E 0.13 TCGA-60-2708-01 8 142154342 142154342 C G DENND3 Missense_Mutation p.P160R 0.55 deleterious(0) probably_damaging(0.988) TCGA-60-2708-01 8 41522505 41522505 C T ANK1 Intron 0.47 TCGA-60-2708-01 8 65527680 65527680 G A CYP7B1 Silent p.D320D 0.15 TCGA-60-2708-01 8 77617343 77617343 A T ZFHX4 Missense_Mutation p.K340N 0.42 possibly_damaging(0.607) TCGA-60-2708-01 8 86037117 86037118 GC AAT LRRCC1 Frame_Shift_Ins p.P406Ifs*4 0.22 TCGA-60-2708-01 8 87683247 87683247 G A CNGB3 Missense_Mutation p.R140C 0.28 deleterious(0.02) benign(0.097) TCGA-60-2708-01 9 115760453 115760453 G T ZNF883 RNA 0.68 TCGA-60-2708-01 9 117405636 117405636 C A C9orf91 3'UTR 0.68 TCGA-60-2708-01 9 130710472 130710472 G A FAM102A Missense_Mutation p.P165L 0.53 tolerated(0.16) benign(0.231) TCGA-60-2708-01 9 135203765 135203765 C T SETX Missense_Mutation p.E1074K 0.58 deleterious(0.01) probably_damaging(0.998) TCGA-60-2708-01 9 138378032 138378032 C T PPP1R26 Missense_Mutation p.P559L 0.54 deleterious(0.02) probably_damaging(0.96) TCGA-60-2708-01 9 2081948 2081948 G A SMARCA2 Missense_Mutation p.M767I 0.62 benign(0.072) TCGA-60-2708-01 9 3225139 3225139 G C RFX3 Missense_Mutation p.P718R 0.26 tolerated_low_confidence(0.08) benign(0.004) TCGA-60-2708-01 9 72741227 72741227 C A MAMDC2 Silent p.R266R 0.43 TCGA-60-2708-01 9 72741230 72741230 G A MAMDC2 Missense_Mutation p.D267N 0.43 deleterious(0) probably_damaging(1) TCGA-60-2708-01 9 84202721 84202721 C G TLE1 Missense_Mutation p.G618R 0.64 deleterious(0) probably_damaging(1) TCGA-60-2708-01 9 85863243 85863243 C G FRMD3 Missense_Mutation p.E462Q 0.25 tolerated(0.41) possibly_damaging(0.5) TCGA-60-2708-01 X 100655663 100655663 G T GLA Silent p.P210P 0.21 TCGA-60-2708-01 X 100668298 100668298 C A HNRNPH2 Missense_Mutation p.S441Y 0.20 tolerated_low_confidence(0.13) benign(0.059) TCGA-60-2708-01 X 100911569 100911569 G T ARMCX2 Missense_Mutation p.P336T 0.15 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-60-2708-01 X 10176330 10176330 C A CLCN4 Silent p.T363T 0.18 TCGA-60-2708-01 X 105152981 105152981 C A NRK Missense_Mutation p.Q451K 0.21 deleterious(0.01) benign(0.02) TCGA-60-2708-01 X 11682535 11682535 G A ARHGAP6 Silent p.D138D 0.32 TCGA-60-2708-01 X 129059031 129059031 C A UTP14A Missense_Mutation p.Q537K 0.17 tolerated(0.2) benign(0.005) TCGA-60-2708-01 X 132351916 132351916 C A TFDP3 Missense_Mutation p.R124S 0.22 tolerated(0.06) benign(0.049) TCGA-60-2708-01 X 135405392 135405392 C A GPR112 Missense_Mutation p.R176S 0.38 tolerated(0.07) benign(0.042) TCGA-60-2708-01 X 140271150 140271150 C G LDOC1 Silent p.L19L 0.11 TCGA-60-2708-01 X 148797511 148797511 C T MAGEA11 Missense_Mutation p.P122L 0.09 tolerated(0.78) benign(0.258) TCGA-60-2708-01 X 151092069 151092069 T G MAGEA4 Intron 0.19 TCGA-60-2708-01 X 151935780 151935780 C T MAGEA3 Silent p.P129P 0.37 TCGA-60-2708-01 X 152966331 152966331 C A BCAP31 3'UTR 0.20 TCGA-60-2708-01 X 153594739 153594739 G T FLNA Missense_Mutation p.P389T 0.15 deleterious(0) probably_damaging(0.995) TCGA-60-2708-01 X 153692007 153692007 C G PLXNA3 Missense_Mutation p.H507Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-60-2708-01 X 153880851 153880851 G A CTAG2 Silent p.I108I 0.19 TCGA-60-2708-01 X 2406605 2406605 G A ZBED1 3'UTR 0.32 TCGA-60-2708-01 X 30873081 30873081 T C TAB3 Missense_Mutation p.Q234R 0.53 tolerated(0.35) benign(0.042) TCGA-60-2708-01 X 34150182 34150182 G A FAM47A Missense_Mutation p.R72C 0.23 tolerated(0.08) probably_damaging(0.953) TCGA-60-2708-01 X 46893118 46893118 A T JADE3 Missense_Mutation p.K261N 0.26 deleterious(0) possibly_damaging(0.744) TCGA-60-2708-01 X 46917581 46917581 C A JADE3 Missense_Mutation p.T525K 0.13 deleterious(0.04) benign(0.439) TCGA-60-2708-01 X 47308234 47308234 G A ZNF41 Missense_Mutation p.P312L 0.22 tolerated(0.09) benign(0.367) TCGA-60-2708-01 X 48767184 48767184 G T SLC35A2 Missense_Mutation p.P61T 0.20 tolerated(0.08) benign(0.032) TCGA-60-2708-01 X 48933067 48933067 G T WDR45 Silent p.V262V 0.20 TCGA-60-2708-01 X 53284070 53284070 C T IQSEC2 Missense_Mutation p.R348H 0.19 deleterious(0.01) probably_damaging(1) TCGA-60-2708-01 X 57936554 57936554 C A ZXDA Nonsense_Mutation p.E101* 0.15 TCGA-60-2708-01 X 64139033 64139033 G T ZC4H2 Silent p.P150P 0.16 TCGA-60-2708-01 X 65242194 65242194 C T VSIG4 Missense_Mutation p.A371T 0.22 tolerated(1) benign(0.001) TCGA-60-2708-01 X 65390371 65390371 C A HEPH Intron 0.15 TCGA-60-2708-01 X 67454367 67454367 G T OPHN1 Missense_Mutation p.H150N 0.21 tolerated(1) benign(0.003) TCGA-60-2708-01 X 69354654 69354654 C A IGBP1 Missense_Mutation p.A157D 0.10 deleterious(0) possibly_damaging(0.836) TCGA-60-2708-01 X 70340905 70340905 G T MED12 Missense_Mutation p.G213V 0.18 benign(0.145) TCGA-60-2708-01 X 70389551 70389551 C T NLGN3 Silent p.S717S 0.45 TCGA-60-2708-01 X 71872438 71872438 T A PHKA1 Missense_Mutation p.M401L 0.40 tolerated(0.94) benign(0.017) TCGA-60-2708-01 X 72674404 72674404 G A CDX4 Missense_Mutation p.V280I 0.22 tolerated(0.33) benign(0.002) TCGA-60-2708-01 X 80457624 80457624 G T SH3BGRL 5'UTR 0.16 TCGA-60-2708-01 X 83128919 83128919 G C CYLC1 Missense_Mutation p.K401N 0.16 deleterious(0.01) unknown(0) TCGA-60-2708-01 X 83724375 83724375 C T HDX Missense_Mutation p.R119K 0.37 tolerated(0.2) benign(0.001) TCGA-60-2708-01 X 91134271 91134271 C A PCDH11X Missense_Mutation p.P1011Q 0.13 tolerated(0.58) benign(0.006) TCGA-60-2708-01 X 99551818 99551818 G T PCDH19 Missense_Mutation p.D968E 0.23 deleterious(0.05) probably_damaging(0.936) TCGA-60-2709-01 10 105201613 105201613 C T PDCD11 Missense_Mutation p.R1530W 0.05 deleterious(0) probably_damaging(1) TCGA-60-2709-01 10 11505629 11505629 C A USP6NL Missense_Mutation p.R450L 0.20 tolerated(0.1) benign(0.105) TCGA-60-2709-01 10 123239354 123239354 C T FGFR2 3'Flank 0.18 TCGA-60-2709-01 10 15600082 15600082 T C ITGA8 Silent p.A919A 0.04 TCGA-60-2709-01 10 27306536 27306536 C G ANKRD26 Missense_Mutation p.R1467S 0.07 tolerated(0.56) benign(0.015) TCGA-60-2709-01 10 27366456 27366456 A G ANKRD26 Silent p.Y296Y 0.07 TCGA-60-2709-01 10 468780 468780 C A DIP2C Missense_Mutation p.M196I 0.16 tolerated(0.15) benign(0.001) TCGA-60-2709-01 10 88446898 88446898 G A LDB3 Silent p.E254E 0.18 TCGA-60-2709-01 11 108235917 108235917 G T ATM Missense_Mutation p.D2987Y 0.10 deleterious(0) benign(0.27) TCGA-60-2709-01 11 126277527 126277527 G C ST3GAL4 Missense_Mutation p.Q113H 0.13 tolerated(0.15) possibly_damaging(0.722) TCGA-60-2709-01 11 1281021 1281021 T A MUC5B Nonsense_Mutation p.C5583* 0.21 TCGA-60-2709-01 11 128844054 128844054 T C ARHGAP32 Missense_Mutation p.Q999R 0.07 deleterious(0.04) probably_damaging(0.985) TCGA-60-2709-01 11 26556100 26556100 T C ANO3 Missense_Mutation p.S323P 0.15 tolerated(0.07) possibly_damaging(0.772) TCGA-60-2709-01 11 55579077 55579077 G C OR5L1 Missense_Mutation p.M45I 0.16 tolerated(0.06) benign(0.016) TCGA-60-2709-01 11 55587917 55587917 C A OR5D18 Missense_Mutation p.T271K 0.16 tolerated(0.16) benign(0.213) TCGA-60-2709-01 11 58602006 58602006 C - GLYATL2 Frame_Shift_Del p.A261Qfs*11 0.11 TCGA-60-2709-01 11 60269474 60269474 C A MS4A12 Missense_Mutation p.L145I 0.04 tolerated(0.08) possibly_damaging(0.789) TCGA-60-2709-01 11 68029102 68029102 C A C11orf24 3'UTR 0.16 TCGA-60-2709-01 11 82881007 82881007 G T PCF11 Missense_Mutation p.M1210I 0.14 tolerated(0.52) benign(0) TCGA-60-2709-01 11 85445732 85445732 T A SYTL2 Nonsense_Mutation p.K213* 0.09 TCGA-60-2709-01 11 86519238 86519238 A G PRSS23 Missense_Mutation p.K185E 0.08 tolerated(0.16) probably_damaging(0.91) TCGA-60-2709-01 11 89075240 89075240 A G NOX4 Splice_Site p.X446_splice 0.07 TCGA-60-2709-01 11 92533914 92533914 G T FAT3 Missense_Mutation p.G2579W 0.12 probably_damaging(1) TCGA-60-2709-01 12 101555837 101555837 G T SLC5A8 Missense_Mutation p.N515K 0.09 deleterious(0.04) benign(0.206) TCGA-60-2709-01 12 104031865 104031865 A T STAB2 Missense_Mutation p.S261C 0.07 deleterious(0.03) possibly_damaging(0.907) TCGA-60-2709-01 12 125473469 125473469 G T DHX37 Missense_Mutation p.L34M 0.13 deleterious(0.03) benign(0.002) TCGA-60-2709-01 12 126135332 126135332 G A TMEM132B Missense_Mutation p.A578T 0.10 deleterious(0.04) benign(0.034) TCGA-60-2709-01 12 13761674 13761674 C T GRIN2B Missense_Mutation p.G625R 0.16 deleterious(0) possibly_damaging(0.906) TCGA-60-2709-01 12 13761675 13761675 C T GRIN2B Silent p.K624K 0.16 TCGA-60-2709-01 12 21032524 21032524 C T SLCO1B3 Silent p.C430C 0.04 TCGA-60-2709-01 12 40704330 40704330 A G LRRK2 Missense_Mutation p.E1472G 0.15 deleterious(0) probably_damaging(0.997) TCGA-60-2709-01 12 53074075 53074075 C A KRT1 Missense_Mutation p.G20C 0.15 tolerated(0.53) unknown(0) TCGA-60-2709-01 12 58014145 58014145 G A SLC26A10 Missense_Mutation p.A48T 0.13 tolerated(0.95) benign(0.007) TCGA-60-2709-01 12 7050104 7050104 C T ATN1 Silent p.I1092I 0.12 TCGA-60-2709-01 12 81839428 81839428 C A PPFIA2 Silent p.R159R 0.10 TCGA-60-2709-01 12 8757847 8757847 G C AICDA Missense_Mutation p.R131G 0.23 tolerated(0.54) benign(0.262) TCGA-60-2709-01 13 101890232 101890232 C A NALCN Missense_Mutation p.K436N 0.07 deleterious(0) probably_damaging(0.998) TCGA-60-2709-01 14 88478316 88478316 G T GPR65 3'UTR 0.36 TCGA-60-2709-01 15 25425504 25425504 A C SNORD115-6 5'Flank 0.10 TCGA-60-2709-01 15 25463673 25463673 C A SNORD115-27 5'Flank 0.12 TCGA-60-2709-01 15 62948154 62948154 G T TLN2 Missense_Mutation p.D177Y 0.19 deleterious(0) probably_damaging(0.967) TCGA-60-2709-01 15 64021766 64021766 T C HERC1 Missense_Mutation p.H984R 0.08 benign(0.118) TCGA-60-2709-01 15 65489813 65489813 C A CILP Missense_Mutation p.W937C 0.06 deleterious(0) possibly_damaging(0.885) TCGA-60-2709-01 15 65489814 65489814 C A CILP Missense_Mutation p.W937L 0.07 tolerated(0.07) benign(0.139) TCGA-60-2709-01 15 74565187 74565187 G T CCDC33 Missense_Mutation p.M238I 0.23 tolerated(0.58) benign(0) TCGA-60-2709-01 15 90347784 90347784 G A ANPEP Missense_Mutation p.T321M 0.09 deleterious(0) possibly_damaging(0.557) TCGA-60-2709-01 16 29917137 29917137 C A ASPHD1 Silent p.V364V 0.05 TCGA-60-2709-01 16 31141397 31141397 C T KAT8 Silent p.Y277Y 0.03 TCGA-60-2709-01 16 47695636 47695636 A G PHKB Missense_Mutation p.S735G 0.18 tolerated(0.16) benign(0) TCGA-60-2709-01 16 61747850 61747850 C G CDH8 Missense_Mutation p.V517L 0.12 tolerated(0.12) benign(0.153) TCGA-60-2709-01 16 67261028 67261028 G A TMEM208 5'UTR 0.07 TCGA-60-2709-01 17 10315735 10315735 C A MYH8 Missense_Mutation p.R456S 0.14 deleterious(0.02) probably_damaging(1) TCGA-60-2709-01 17 11737952 11737952 C T DNAH9 Intron 0.12 TCGA-60-2709-01 17 15641629 15641629 G T TBC1D26 Silent p.A105A 0.10 TCGA-60-2709-01 17 34136558 34136558 G T TAF15 5'UTR 0.15 TCGA-60-2709-01 17 40269416 40269416 C T KAT2A Missense_Mutation p.V543I 0.09 tolerated(0.06) benign(0.108) TCGA-60-2709-01 17 43111557 43111557 C A DCAKD Missense_Mutation p.R105L 0.26 tolerated(0.24) benign(0.011) TCGA-60-2709-01 17 43321333 43321333 C A FMNL1 Missense_Mutation p.R797S 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-60-2709-01 17 73727038 73727038 C A ITGB4 Missense_Mutation p.A362D 0.05 deleterious(0) probably_damaging(0.939) TCGA-60-2709-01 17 7577548 7577548 C A TP53 Missense_Mutation p.G245C 0.17 deleterious(0) probably_damaging(1) TCGA-60-2709-01 17 78867568 78867568 C T RPTOR Silent p.T768T 0.15 TCGA-60-2709-01 17 8076944 8076944 G T TMEM107 3'Flank 0.11 TCGA-60-2709-01 18 21123435 21123435 A T NPC1 Silent p.T743T 0.13 TCGA-60-2709-01 18 56587032 56587032 G C ZNF532 Missense_Mutation p.V505L 0.09 tolerated(0.1) possibly_damaging(0.829) TCGA-60-2709-01 19 15739591 15739591 C T CYP4F8 RNA 0.08 TCGA-60-2709-01 19 22156775 22156775 G A ZNF208 Missense_Mutation p.S354L 0.09 deleterious(0.04) possibly_damaging(0.602) TCGA-60-2709-01 19 22942420 22942420 T A ZNF99 Missense_Mutation p.E97D 0.17 deleterious(0.03) benign(0.232) TCGA-60-2709-01 19 33870400 33870400 G A CEBPG Silent p.Q85Q 0.19 TCGA-60-2709-01 19 38610493 38610493 G C SIPA1L3 Missense_Mutation p.D947H 0.18 deleterious(0) probably_damaging(0.966) TCGA-60-2709-01 19 43430857 43430857 T A PSG7 Nonsense_Mutation p.K241* 0.05 TCGA-60-2709-01 19 43585314 43585314 T A PSG2 Missense_Mutation p.D50V 0.04 deleterious(0) probably_damaging(0.99) TCGA-60-2709-01 19 46417622 46417622 C A NANOS2 Silent p.T110T 0.12 TCGA-60-2709-01 19 4817415 4817415 G A TICAM1 Silent p.P325P 0.15 TCGA-60-2709-01 19 52147135 52147135 G T SIGLEC14 Silent p.T303T 0.20 TCGA-60-2709-01 19 52220302 52220302 G T HAS1 Missense_Mutation p.L283M 0.13 deleterious(0) probably_damaging(0.991) TCGA-60-2709-01 19 52570282 52570282 T G ZNF841 Missense_Mutation p.T285P 0.15 deleterious(0.03) possibly_damaging(0.713) TCGA-60-2709-01 19 52876491 52876491 G A ZNF880 Splice_Site p.X47_splice 0.06 TCGA-60-2709-01 19 54744726 54744726 G A LILRA6 Silent p.P312P 0.09 TCGA-60-2709-01 19 7682718 7682718 G A CAMSAP3 Silent p.L1202L 0.20 TCGA-60-2709-01 19 9088858 9088858 G A MUC16 Missense_Mutation p.S986L 0.04 unknown(0) TCGA-60-2709-01 19 9089167 9089167 C T MUC16 Missense_Mutation p.R883K 0.07 unknown(0) TCGA-60-2709-01 1 154316660 154316660 G T ATP8B2 Silent p.G688G 0.09 TCGA-60-2709-01 1 155014074 155014074 A C DCST1 Missense_Mutation p.K245Q 0.18 deleterious(0.01) possibly_damaging(0.459) TCGA-60-2709-01 1 159175347 159175347 G C DARC Missense_Mutation p.D42H 0.08 deleterious(0.03) possibly_damaging(0.755) TCGA-60-2709-01 1 159799706 159799706 G A SLAMF8 Missense_Mutation p.G31S 0.04 tolerated(0.52) benign(0.002) TCGA-60-2709-01 1 169489877 169489877 G T F5 Missense_Mutation p.S2025Y 0.12 tolerated(0.54) benign(0.087) TCGA-60-2709-01 1 169511269 169511269 A G F5 Missense_Mutation p.L1020P 0.15 deleterious(0.02) benign(0.103) TCGA-60-2709-01 1 173880956 173880956 A G SERPINC1 Missense_Mutation p.L202P 0.21 deleterious(0) probably_damaging(0.999) TCGA-60-2709-01 1 173880990 173880990 G C SERPINC1 Missense_Mutation p.Q191E 0.22 deleterious(0.03) probably_damaging(0.941) TCGA-60-2709-01 1 179460734 179460734 C T AXDND1 Missense_Mutation p.P718L 0.08 deleterious(0) possibly_damaging(0.908) TCGA-60-2709-01 1 186014936 186014936 G T HMCN1 Missense_Mutation p.G2141C 0.08 probably_damaging(1) TCGA-60-2709-01 1 197026480 197026480 C T F13B Silent p.E307E 0.14 TCGA-60-2709-01 1 208390594 208390594 A G PLXNA2 Missense_Mutation p.L225P 0.05 tolerated(0.15) probably_damaging(0.998) TCGA-60-2709-01 1 216737588 216737588 T C ESRRG Missense_Mutation p.I291V 0.19 tolerated(0.38) benign(0.149) TCGA-60-2709-01 1 232649736 232649736 G A SIPA1L2 Silent p.C450C 0.12 TCGA-60-2709-01 1 236646512 236646512 G C EDARADD 3'Flank 0.09 TCGA-60-2709-01 1 236736089 236736089 G C HEATR1 Missense_Mutation p.P1167A 0.10 deleterious(0.01) benign(0.317) TCGA-60-2709-01 1 236889288 236889288 T C ACTN2 Silent p.Y168Y 0.13 TCGA-60-2709-01 1 245850124 245850124 C G KIF26B Missense_Mutation p.S1280C 0.10 deleterious(0) unknown(0) TCGA-60-2709-01 1 247920913 247920913 G - OR1C1 Frame_Shift_Del p.H266Ifs*20 0.21 TCGA-60-2709-01 1 248005145 248005145 C T OR11L1 Silent p.Q18Q 0.11 TCGA-60-2709-01 1 40981373 40981373 C T EXO5 3'UTR 0.23 TCGA-60-2709-01 1 68948029 68948029 T C DEPDC1 Missense_Mutation p.T488A 0.28 tolerated(1) benign(0.001) TCGA-60-2709-01 1 71418467 71418467 C T PTGER3 3'UTR 0.27 TCGA-60-2709-01 1 75107143 75107143 C A C1orf173 Nonsense_Mutation p.G106* 0.09 TCGA-60-2709-01 1 75107144 75107144 C G C1orf173 Splice_Site p.X106_splice 0.09 TCGA-60-2709-01 1 78324687 78324687 A G FAM73A Missense_Mutation p.Y354C 0.06 deleterious(0) probably_damaging(1) TCGA-60-2709-01 20 41306584 41306584 G A PTPRT Nonsense_Mutation p.R359* 0.15 TCGA-60-2709-01 21 33067159 33067159 T C SCAF4 Silent p.Q401Q 0.16 TCGA-60-2709-01 21 47822383 47822383 A T PCNT Missense_Mutation p.N1701Y 0.08 benign(0.02) TCGA-60-2709-01 22 25115789 25115789 C T PIWIL3 Missense_Mutation p.D820N 0.11 deleterious(0) probably_damaging(1) TCGA-60-2709-01 22 35478545 35478545 C T ISX Silent p.T88T 0.10 TCGA-60-2709-01 22 50438983 50438983 G T IL17REL Silent p.A86A 0.17 TCGA-60-2709-01 22 51065062 51065062 C G ARSA Missense_Mutation p.G271R 0.08 deleterious(0.03) probably_damaging(0.993) TCGA-60-2709-01 22 51117757 51117757 C T SHANK3 Silent p.H262H 0.24 TCGA-60-2709-01 2 127944816 127944816 T G CYP27C1 3'UTR 0.22 TCGA-60-2709-01 2 130929950 130929950 C T SMPD4 Missense_Mutation p.G250R 0.20 tolerated(0.12) probably_damaging(0.991) TCGA-60-2709-01 2 136566975 136566975 G T LCT Missense_Mutation p.S981Y 0.13 deleterious(0.01) probably_damaging(0.981) TCGA-60-2709-01 2 155098562 155098562 C G GALNT13 Missense_Mutation p.P111A 0.09 tolerated(0.4) benign(0.001) TCGA-60-2709-01 2 173853511 173853511 G A RAPGEF4 Missense_Mutation p.E440K 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-60-2709-01 2 178098804 178098804 C T NFE2L2 Missense_Mutation p.G81S 0.21 deleterious(0) probably_damaging(1) TCGA-60-2709-01 2 224759044 224759044 C G WDFY1 Missense_Mutation p.Q246H 0.09 deleterious(0.04) probably_damaging(0.981) TCGA-60-2709-01 2 24964797 24964797 C A NCOA1 Missense_Mutation p.L1150I 0.06 tolerated(0.45) possibly_damaging(0.458) TCGA-60-2709-01 2 37259800 37259800 A T HEATR5B Missense_Mutation p.N1111K 0.19 tolerated(0.07) benign(0.003) TCGA-60-2709-01 2 39025486 39025486 T G DHX57 Silent p.G1372G 0.04 TCGA-60-2709-01 2 54001452 54001452 T C CHAC2 Silent p.N115N 0.04 TCGA-60-2709-01 2 77748827 77748827 C T LRRTM4 5'UTR 0.10 TCGA-60-2709-01 2 79314784 79314784 T C REG1B Intron 0.09 TCGA-60-2709-01 2 80530036 80530036 C G LRRTM1 Missense_Mutation p.W303C 0.20 deleterious(0) probably_damaging(0.999) TCGA-60-2709-01 2 80874960 80874960 A T CTNNA2 Missense_Mutation p.Q894L 0.20 deleterious(0.01) possibly_damaging(0.637) TCGA-60-2709-01 2 88396294 88396294 C G SMYD1 Missense_Mutation p.D293E 0.13 tolerated(0.73) benign(0.012) TCGA-60-2709-01 2 90229439 90229439 A C IGKV1D-42 Silent p.R87R 0.10 TCGA-60-2709-01 3 122629864 122629864 C A SEMA5B Silent p.T1094T 0.18 TCGA-60-2709-01 3 147128288 147128288 G C ZIC1 Missense_Mutation p.G130A 0.11 tolerated(0.33) benign(0.063) TCGA-60-2709-01 3 158787137 158787137 A C IQCJ 5'UTR 0.05 TCGA-60-2709-01 3 180328168 180328168 T C TTC14 Silent p.N717N 0.05 TCGA-60-2709-01 3 183824055 183824055 C G HTR3E Missense_Mutation p.N381K 0.08 tolerated(0.19) benign(0.004) TCGA-60-2709-01 3 32761603 32761603 C G CNOT10 Intron 0.09 TCGA-60-2709-01 3 62570895 62570895 G T CADPS Silent p.V514V 0.17 TCGA-60-2709-01 3 62570972 62570972 G T CADPS Missense_Mutation p.P489T 0.18 tolerated(0.12) possibly_damaging(0.641) TCGA-60-2709-01 3 69097101 69097101 C A TMF1 Missense_Mutation p.G252V 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-60-2709-01 3 98002546 98002546 C T OR5H2 Missense_Mutation p.A272V 0.12 tolerated(0.2) benign(0.02) TCGA-60-2709-01 3 98235705 98235705 G A CLDND1 Missense_Mutation p.S210L 0.17 tolerated(0.19) benign(0.003) TCGA-60-2709-01 3 99509692 99509692 C A COL8A1 Missense_Mutation p.Q56K 0.08 tolerated_low_confidence(0.38) unknown(0) TCGA-60-2709-01 4 146651106 146651106 G T C4orf51 Missense_Mutation p.V164F 0.15 tolerated(0.97) benign(0) TCGA-60-2709-01 4 185678178 185678178 C T ACSL1 3'UTR 0.07 TCGA-60-2709-01 4 47905311 47905311 T C NFXL1 Missense_Mutation p.I182M 0.16 tolerated(0.31) benign(0.057) TCGA-60-2709-01 4 5170131 5170131 C T STK32B Silent p.L72L 0.07 TCGA-60-2709-01 4 73148941 73148941 C - ADAMTS3 Frame_Shift_Del p.G1177Vfs*27 0.26 TCGA-60-2709-01 5 137241999 137241999 C T PKD2L2 Missense_Mutation p.S284F 0.16 tolerated(0.16) benign(0.299) TCGA-60-2709-01 5 139876442 139876442 A T ANKHD1 Missense_Mutation p.K861N 0.12 unknown(0) TCGA-60-2709-01 5 140475898 140475898 C G PCDHB2 Missense_Mutation p.I508M 0.14 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-60-2709-01 5 141039405 141039405 C T ARAP3 Missense_Mutation p.G1070R 0.10 deleterious(0.01) probably_damaging(1) TCGA-60-2709-01 5 156638380 156638380 G T ITK Splice_Site p.X109_splice 0.16 TCGA-60-2709-01 5 177422872 177422872 C T PROP1 Silent p.L21L 0.10 TCGA-60-2709-01 5 23526739 23526739 G T PRDM9 Silent p.V514V 0.15 TCGA-60-2709-01 5 24498560 24498560 G T CDH10 Missense_Mutation p.Q488K 0.14 deleterious(0.04) benign(0.007) TCGA-60-2709-01 5 41382481 41382481 G T PLCXD3 Missense_Mutation p.Q87K 0.13 deleterious(0.03) probably_damaging(0.996) TCGA-60-2709-01 5 44815184 44815184 T C MRPS30 Silent p.P400P 0.12 TCGA-60-2709-01 5 77521374 77521374 T C AP3B1 Missense_Mutation p.K199E 0.15 deleterious(0) possibly_damaging(0.771) TCGA-60-2709-01 6 100016442 100016442 G A CCNC 5'UTR 0.29 TCGA-60-2709-01 6 107391975 107391975 C G BEND3 Missense_Mutation p.E140D 0.11 tolerated_low_confidence(0.35) benign(0.061) TCGA-60-2709-01 6 119232904 119232904 G C MCM9 Missense_Mutation p.P354R 0.20 deleterious(0) probably_damaging(0.998) TCGA-60-2709-01 6 152671350 152671350 C A SYNE1 Nonsense_Mutation p.E3952* 0.26 TCGA-60-2709-01 6 66200499 66200499 C A EYS Nonsense_Mutation p.E284* 0.53 TCGA-60-2709-01 6 7401202 7401202 C A RIOK1 Silent p.P164P 0.08 TCGA-60-2709-01 6 75828897 75828897 C T COL12A1 Missense_Mutation p.A2406T 0.07 probably_damaging(0.999) TCGA-60-2709-01 7 100682143 100682143 C T MUC17 Silent p.D2482D 0.09 TCGA-60-2709-01 7 102957333 102957333 A - DNAJC2 Frame_Shift_Del p.D457Efs*6 0.12 TCGA-60-2709-01 7 103113314 103113314 T C RELN Missense_Mutation p.H3443R 0.11 tolerated_low_confidence(0.1) benign(0.046) TCGA-60-2709-01 7 111422981 111422981 C A DOCK4 Splice_Site p.X1166_splice 0.08 TCGA-60-2709-01 7 121684484 121684484 T G PTPRZ1 Nonsense_Mutation p.Y1982* 0.18 TCGA-60-2709-01 7 124386948 124386948 G A GPR37 Silent p.N491N 0.08 TCGA-60-2709-01 7 143748079 143748079 C G OR2A5 Missense_Mutation p.N195K 0.10 deleterious(0) probably_damaging(0.955) TCGA-60-2709-01 7 149500666 149500666 C T SSPO RNA 0.12 TCGA-60-2709-01 7 152007083 152007083 C A KMT2C Missense_Mutation p.V273L 0.06 probably_damaging(0.999) TCGA-60-2709-01 7 17874389 17874389 T C SNX13 Missense_Mutation p.R487G 0.09 tolerated(0.19) benign(0.425) TCGA-60-2709-01 7 2402714 2402714 G T EIF3B Silent p.T274T 0.07 TCGA-60-2709-01 7 2956965 2956965 G A CARD11 Missense_Mutation p.R888C 0.12 deleterious(0) probably_damaging(1) TCGA-60-2709-01 7 37264597 37264597 C A ELMO1 Silent p.S196S 0.14 TCGA-60-2709-01 7 43916223 43916223 C T URGCP 3'UTR 0.13 TCGA-60-2709-01 7 44150570 44150570 T A AEBP1 Missense_Mutation p.V515E 0.11 deleterious(0) possibly_damaging(0.904) TCGA-60-2709-01 7 48313943 48313943 T C ABCA13 Silent p.G1560G 0.12 TCGA-60-2709-01 7 65617275 65617275 A G CRCP Silent p.A126A 0.20 TCGA-60-2709-01 7 66463151 66463151 G T TYW1 Missense_Mutation p.W35L 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.721) TCGA-60-2709-01 7 66463152 66463152 G T TYW1 Missense_Mutation p.W35C 0.10 tolerated_low_confidence(0.07) benign(0.12) TCGA-60-2709-01 7 81589146 81589146 C A CACNA2D1 Splice_Site p.X989_splice 0.21 TCGA-60-2709-01 7 88423447 88423447 A T C7orf62 3'UTR 0.17 TCGA-60-2709-01 7 99694927 99694927 G A MCM7 Missense_Mutation p.R400C 0.09 deleterious(0) probably_damaging(1) TCGA-60-2709-01 8 113326816 113326816 T A CSMD3 Missense_Mutation p.D2464V 0.08 tolerated(0.07) probably_damaging(0.995) TCGA-60-2709-01 8 113702181 113702181 G T CSMD3 Missense_Mutation p.Q691K 0.05 deleterious(0.04) possibly_damaging(0.5) TCGA-60-2709-01 8 139164043 139164043 C A FAM135B Missense_Mutation p.R892M 0.07 tolerated_low_confidence(0.08) benign(0.013) TCGA-60-2709-01 8 22481752 22481752 G A BIN3 Silent p.L155L 0.06 TCGA-60-2709-01 8 26510758 26510758 T A DPYSL2 Missense_Mutation p.L491Q 0.08 tolerated(0.3) benign(0.1) TCGA-60-2709-01 8 3266999 3266999 C A CSMD1 Missense_Mutation p.V564F 0.14 benign(0.185) TCGA-60-2709-01 8 38809709 38809709 G T PLEKHA2 Missense_Mutation p.S171I 0.27 tolerated(0.09) benign(0.01) TCGA-60-2709-01 8 77767552 77767552 G T ZFHX4 Missense_Mutation p.D2799Y 0.09 probably_damaging(0.999) TCGA-60-2709-01 9 129642902 129642902 C T ZBTB34 Silent p.F404F 0.20 TCGA-60-2709-01 9 130580933 130580933 G C ENG Intron 0.05 TCGA-60-2709-01 9 131339714 131339714 A T SPTAN1 Missense_Mutation p.E338D 0.20 tolerated(0.69) benign(0.132) TCGA-60-2709-01 9 14859375 14859383 TCAGGCACC - FREM1 In_Frame_Del p.V144_E146del 0.12 TCGA-60-2709-01 9 74838057 74838057 G A GDA Missense_Mutation p.V210M 0.20 deleterious(0) probably_damaging(0.967) TCGA-60-2709-01 9 89771592 89771592 C G C9orf170 Missense_Mutation p.N91K 0.15 tolerated_low_confidence(0.58) benign(0) TCGA-60-2709-01 9 99797855 99797855 C T CTSV Missense_Mutation p.V248I 0.16 tolerated(0.09) benign(0.112) TCGA-60-2709-01 X 101097786 101097786 A G NXF5 5'UTR 0.24 TCGA-60-2709-01 X 106845620 106845620 C A FRMPD3 Missense_Mutation p.P1484T 0.21 deleterious(0) probably_damaging(0.999) TCGA-60-2709-01 X 112033995 112033995 G A AMOT Nonsense_Mutation p.Q648* 0.26 TCGA-60-2709-01 X 1409284 1409284 G A CSF2RA Silent p.V176V 0.13 TCGA-60-2709-01 X 148685677 148685677 G T TMEM185A Missense_Mutation p.D161E 0.06 deleterious(0) possibly_damaging(0.749) TCGA-60-2709-01 X 149013524 149013524 T C MAGEA8 Missense_Mutation p.C160R 0.07 tolerated(0.18) possibly_damaging(0.532) TCGA-60-2709-01 X 155127863 155127863 C G VAMP7 Missense_Mutation p.L98V 0.07 tolerated(0.24) possibly_damaging(0.897) TCGA-60-2709-01 X 30236741 30236741 G T MAGEB2 Missense_Mutation p.R15L 0.31 deleterious(0.02) probably_damaging(1) TCGA-60-2709-01 X 37953630 37953630 C A SYTL5 Missense_Mutation p.T305N 0.19 tolerated(0.3) benign(0.004) TCGA-60-2709-01 X 77395126 77395126 C A TAF9B 5'UTR 0.23 TCGA-60-2709-01 X 79945466 79945466 C A BRWD3 Missense_Mutation p.G1243V 0.16 deleterious(0.02) possibly_damaging(0.84) TCGA-60-2709-01 X 91134254 91134254 G T PCDH11X Silent p.V1005V 0.26 TCGA-60-2710-01 10 123279562 123279562 C G FGFR2 Missense_Mutation p.W290C 0.37 deleterious(0) probably_damaging(0.94) TCGA-60-2710-01 10 135204850 135204850 G A PAOX Missense_Mutation p.R476H 0.43 deleterious(0.03) probably_damaging(0.997) TCGA-60-2710-01 10 73491830 73491830 G A CDH23 Missense_Mutation p.V1273M 0.06 tolerated(0.13) probably_damaging(0.99) TCGA-60-2710-01 11 1026120 1026120 C T MUC6 Nonsense_Mutation p.W856* 0.23 TCGA-60-2710-01 11 107288983 107288983 C A CWF19L2 Silent p.L488L 0.28 TCGA-60-2710-01 11 118772546 118772546 C T BCL9L Missense_Mutation p.G636S 0.36 benign(0.441) TCGA-60-2710-01 11 46419148 46419148 G T AMBRA1 Missense_Mutation p.S1160Y 0.29 deleterious_low_confidence(0.01) benign(0.062) TCGA-60-2710-01 11 47280728 47280728 C T NR1H3 5'UTR 0.31 TCGA-60-2710-01 11 55036728 55036728 G - TRIM48 Frame_Shift_Del p.V197Cfs*9 0.29 TCGA-60-2710-01 11 56000488 56000488 G A OR5T2 Silent p.D58D 0.11 TCGA-60-2710-01 11 57087823 57087823 G A TNKS1BP1 Missense_Mutation p.S153L 0.30 deleterious(0.01) benign(0.331) TCGA-60-2710-01 11 62287531 62287531 G C AHNAK Silent p.P4786P 0.24 TCGA-60-2710-01 11 65620388 65620388 A C SNX32 Missense_Mutation p.N373H 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-60-2710-01 11 65766022 65766022 G A EIF1AD 3'UTR 0.28 TCGA-60-2710-01 11 88781128 88781128 G T GRM5 5'UTR 0.29 TCGA-60-2710-01 12 11507478 11507478 C T PRB1 Silent p.Q25Q 0.31 TCGA-60-2710-01 12 117014012 117014012 G T MAP1LC3B2 Missense_Mutation p.V89F 0.28 deleterious(0.04) probably_damaging(0.968) TCGA-60-2710-01 12 122018062 122018062 A T KDM2B Intron 0.41 TCGA-60-2710-01 12 129569169 129569169 A G TMEM132D Missense_Mutation p.Y508H 0.19 tolerated(0.15) possibly_damaging(0.499) TCGA-60-2710-01 12 132428116 132428116 C T PUS1 Silent p.D423D 0.22 TCGA-60-2710-01 12 13716347 13716347 G A GRIN2B Silent p.N1275N 0.24 TCGA-60-2710-01 12 40699752 40699752 G A LRRK2 Missense_Mutation p.A1315T 0.26 tolerated(1) benign(0.098) TCGA-60-2710-01 12 4385368 4385368 C A CCND2 Silent p.I131I 0.06 TCGA-60-2710-01 12 52681782 52681782 A G KRT81 Missense_Mutation p.W296R 0.21 deleterious(0) probably_damaging(0.983) TCGA-60-2710-01 12 53824031 53824031 C G AMHR2 Missense_Mutation p.P464A 0.29 deleterious(0.01) benign(0.202) TCGA-60-2710-01 12 56982752 56982752 G A RBMS2 Missense_Mutation p.A394T 0.05 tolerated_low_confidence(1) benign(0) TCGA-60-2710-01 12 6658975 6658975 G A IFFO1 Missense_Mutation p.L340F 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-60-2710-01 13 110822951 110822951 G T COL4A1 Missense_Mutation p.H1229N 0.50 possibly_damaging(0.841) TCGA-60-2710-01 13 111092145 111092145 G T COL4A2 Missense_Mutation p.G308C 0.53 probably_damaging(1) TCGA-60-2710-01 13 113773143 113773143 C T F7 Missense_Mutation p.H408Y 0.70 deleterious(0.01) probably_damaging(0.998) TCGA-60-2710-01 13 46930571 46930571 C A KIAA0226L Missense_Mutation p.E442D 0.45 tolerated(0.06) benign(0.167) TCGA-60-2710-01 13 48563082 48563082 T A SUCLA2 Missense_Mutation p.L102F 0.05 deleterious(0) possibly_damaging(0.829) TCGA-60-2710-01 13 73321211 73321211 G A BORA Missense_Mutation p.E482K 0.49 deleterious(0) probably_damaging(0.999) TCGA-60-2710-01 14 105617415 105617415 A G JAG2 Missense_Mutation p.C432R 0.55 deleterious(0) probably_damaging(0.932) TCGA-60-2710-01 14 106791224 106791224 A G IGHV3-30 Silent p.S44S 0.21 TCGA-60-2710-01 14 23072983 23072983 G A ABHD4 Nonsense_Mutation p.W213* 0.37 TCGA-60-2710-01 14 24901672 24901674 GAG - KHNYN In_Frame_Del p.G403del 0.30 TCGA-60-2710-01 14 64921543 64921543 G A MTHFD1 Missense_Mutation p.D890N 0.06 deleterious(0.02) probably_damaging(0.999) TCGA-60-2710-01 14 94964657 94964657 T C SERPINA12 Silent p.S26S 0.49 TCGA-60-2710-01 15 35529763 35529763 C A ANP32AP1 RNA 0.22 TCGA-60-2710-01 15 40586508 40586508 C T PLCB2 Missense_Mutation p.D674N 0.24 tolerated(0.39) probably_damaging(1) TCGA-60-2710-01 15 44089090 44089090 A T SERINC4 Missense_Mutation p.I298N 0.21 deleterious(0) probably_damaging(0.985) TCGA-60-2710-01 15 49073427 49073427 T C CEP152 Missense_Mutation p.K515E 0.25 deleterious(0) probably_damaging(0.999) TCGA-60-2710-01 15 49081013 49081013 G C CEP152 Silent p.T386T 0.19 TCGA-60-2710-01 15 50544911 50544911 C T HDC Missense_Mutation p.C283Y 0.18 deleterious(0) probably_damaging(0.997) TCGA-60-2710-01 15 62266538 62266538 C A VPS13C Missense_Mutation p.M829I 0.23 tolerated(1) benign(0) TCGA-60-2710-01 15 73994761 73994783 GCCAGGACCAGGGCAGCGCCTAT - CD276 Frame_Shift_Del p.D84Pfs*82 0.19 TCGA-60-2710-01 15 79051768 79051768 G A ADAMTS7 Missense_Mutation p.R1686C 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-60-2710-01 15 85400801 85400801 G T ALPK3 Silent p.G1146G 0.12 TCGA-60-2710-01 16 16208628 16208628 G A ABCC1 Missense_Mutation p.A1029T 0.25 tolerated(0.34) benign(0.05) TCGA-60-2710-01 16 2152898 2152898 G C PKD1 Missense_Mutation p.H2955Q 0.04 benign(0.391) TCGA-60-2710-01 16 74709650 74709650 C T MLKL Missense_Mutation p.E351K 0.04 deleterious(0.03) possibly_damaging(0.501) TCGA-60-2710-01 16 87436590 87436590 G T MAP1LC3B Missense_Mutation p.V89F 0.12 deleterious(0.03) probably_damaging(0.976) TCGA-60-2710-01 17 18022280 18022280 G A MYO15A Missense_Mutation p.A56T 0.54 probably_damaging(0.988) TCGA-60-2710-01 17 32483299 32483299 C G ASIC2 Missense_Mutation p.V85L 0.34 tolerated(0.13) benign(0.012) TCGA-60-2710-01 17 42089432 42089432 G A TMEM101 Missense_Mutation p.P213L 0.33 tolerated(1) benign(0) TCGA-60-2710-01 17 48275825 48275825 G A COL1A1 Missense_Mutation p.S171L 0.36 unknown(0) TCGA-60-2710-01 17 7577550 7577550 C T TP53 Missense_Mutation p.G244D 0.35 deleterious(0) probably_damaging(1) TCGA-60-2710-01 17 78282826 78282826 A G RNF213 Missense_Mutation p.E837G 0.25 benign(0.016) TCGA-60-2710-01 17 900616 900616 G - TIMM22 Frame_Shift_Del p.G79Efs*5 0.22 TCGA-60-2710-01 18 22007887 22007887 A C IMPACT Missense_Mutation p.E14A 0.33 deleterious(0.01) probably_damaging(0.971) TCGA-60-2710-01 18 35145471 35145471 G A CELF4 Missense_Mutation p.T45I 0.28 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-60-2710-01 18 50731683 50731683 A T DCC Silent p.P557P 0.28 TCGA-60-2710-01 18 61390434 61390434 A G SERPINB11 Missense_Mutation p.Y327C 0.31 tolerated(0.13) possibly_damaging(0.882) TCGA-60-2710-01 18 67816249 67816249 G C RTTN Missense_Mutation p.L733V 0.32 deleterious(0) possibly_damaging(0.693) TCGA-60-2710-01 18 7231499 7231499 C G LRRC30 Silent p.V121V 0.29 TCGA-60-2710-01 19 10439562 10439562 T A RAVER1 Missense_Mutation p.Q188L 0.06 tolerated(0.1) benign(0.002) TCGA-60-2710-01 19 10464290 10464290 C T TYK2 Missense_Mutation p.V981M 0.36 tolerated(0.08) benign(0.412) TCGA-60-2710-01 19 10600447 10600447 G A KEAP1 Missense_Mutation p.R470C 0.33 deleterious(0.01) benign(0.136) TCGA-60-2710-01 19 12461559 12461559 A G ZNF442 Silent p.Y280Y 0.36 TCGA-60-2710-01 19 15131288 15131288 C T CCDC105 Nonsense_Mutation p.R231* 0.16 TCGA-60-2710-01 19 19790295 19790295 A G ZNF101 Missense_Mutation p.K166R 0.26 deleterious(0.05) benign(0.009) TCGA-60-2710-01 19 20045162 20045162 A T ZNF93 Silent p.S466S 0.24 TCGA-60-2710-01 19 2210489 2210489 G T DOT1L Missense_Mutation p.G366C 0.28 tolerated_low_confidence(0.18) possibly_damaging(0.874) TCGA-60-2710-01 19 22362956 22362956 A T ZNF676 Silent p.T521T 0.34 TCGA-60-2710-01 19 22364342 22364342 T C ZNF676 Missense_Mutation p.I59M 0.33 tolerated(0.11) benign(0.276) TCGA-60-2710-01 19 23544209 23544209 G A ZNF91 Silent p.G524G 0.39 TCGA-60-2710-01 19 2917240 2917240 T A ZNF57 Missense_Mutation p.H207Q 0.29 tolerated(0.29) possibly_damaging(0.72) TCGA-60-2710-01 19 39998992 39998992 C G DLL3 3'UTR 0.28 TCGA-60-2710-01 19 42219744 42219744 T C CEACAM5 Silent p.N293N 0.36 TCGA-60-2710-01 19 49143088 49143088 G A CA11 Missense_Mutation p.S175F 0.31 deleterious(0.04) possibly_damaging(0.621) TCGA-60-2710-01 19 53959049 53959049 A T ZNF761 RNA 0.11 TCGA-60-2710-01 19 56443409 56443409 T C NLRP13 Missense_Mutation p.Q90R 0.08 tolerated(0.76) benign(0.059) TCGA-60-2710-01 19 57802555 57802555 A G ZNF460 Missense_Mutation p.I216V 0.29 tolerated(0.19) benign(0.027) TCGA-60-2710-01 19 57839516 57839516 G T ZNF543 Missense_Mutation p.C229F 0.35 deleterious(0) probably_damaging(1) TCGA-60-2710-01 19 6501604 6501604 T A TUBB4A Missense_Mutation p.I30F 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.754) TCGA-60-2710-01 1 113059863 113059863 C T WNT2B Missense_Mutation p.R268C 0.29 deleterious(0) probably_damaging(0.93) TCGA-60-2710-01 1 118424471 118424471 A C GDAP2 Missense_Mutation p.F426V 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-60-2710-01 1 12414036 12414036 G T VPS13D Missense_Mutation p.C3146F 0.30 probably_damaging(0.991) TCGA-60-2710-01 1 12786072 12786072 G A AADACL3 3'Flank 0.45 TCGA-60-2710-01 1 150532769 150532769 C T ADAMTSL4 3'UTR 0.33 TCGA-60-2710-01 1 151826146 151826146 G A THEM5 5'UTR 0.42 TCGA-60-2710-01 1 152595351 152595351 C A LCE3A Missense_Mutation p.G77W 0.34 deleterious_low_confidence(0) unknown(0) TCGA-60-2710-01 1 154033014 154033014 A T NUP210L Splice_Site p.X950_splice 0.33 TCGA-60-2710-01 1 155209779 155209779 T G GBA Missense_Mutation p.T69P 0.33 tolerated(0.28) benign(0.001) TCGA-60-2710-01 1 156450724 156450724 C A MEF2D Nonsense_Mutation p.E100* 0.31 TCGA-60-2710-01 1 157716445 157716445 A G FCRL2 3'UTR 0.14 TCGA-60-2710-01 1 171753323 171753323 G T METTL13 Missense_Mutation p.Q199H 0.34 tolerated(0.11) benign(0.195) TCGA-60-2710-01 1 17948358 17948358 G T ARHGEF10L Splice_Site p.X315_splice 0.18 TCGA-60-2710-01 1 186648497 186648497 G A PTGS2 Silent p.C42C 0.06 TCGA-60-2710-01 1 197316552 197316552 C A CRB1 Missense_Mutation p.H311N 0.34 tolerated(0.27) possibly_damaging(0.491) TCGA-60-2710-01 1 209964185 209964185 G A IRF6 Nonsense_Mutation p.Q239* 0.36 TCGA-60-2710-01 1 212193539 212193539 T C INTS7 Missense_Mutation p.N99S 0.39 tolerated(0.08) possibly_damaging(0.586) TCGA-60-2710-01 1 213414125 213414125 C T RPS6KC1 Missense_Mutation p.P436S 0.30 tolerated(1) benign(0) TCGA-60-2710-01 1 247835882 247835882 C A OR13G1 Missense_Mutation p.W154C 0.30 tolerated(0.19) benign(0.018) TCGA-60-2710-01 1 3512012 3512012 C A MEGF6 Splice_Site p.X89_splice 0.27 TCGA-60-2710-01 1 39384712 39384712 G A RHBDL2 Missense_Mutation p.S58F 0.35 tolerated(0.07) benign(0.001) TCGA-60-2710-01 1 43915782 43915782 G A SZT2 Silent p.L3308L 0.04 TCGA-60-2710-01 1 52828404 52828404 C G CC2D1B Missense_Mutation p.M28I 0.24 deleterious(0.02) benign(0.002) TCGA-60-2710-01 1 57480937 57480937 G A DAB1 Missense_Mutation p.P355S 0.34 tolerated(0.11) benign(0.197) TCGA-60-2710-01 1 72400800 72400802 TGT - NEGR1 In_Frame_Del p.Q123del 0.34 TCGA-60-2710-01 1 8684379 8684379 T A RERE Missense_Mutation p.D129V 0.30 possibly_damaging(0.519) TCGA-60-2710-01 1 91989991 91989991 G T CDC7 Nonstop_Mutation p.*575Lext*1 0.20 TCGA-60-2710-01 20 13074196 13074196 T C SPTLC3 Silent p.G266G 0.20 TCGA-60-2710-01 20 33315091 33315091 T A NCOA6 Silent p.R2040R 0.03 TCGA-60-2710-01 20 43836328 43836328 T C SEMG1 Silent p.H130H 0.25 TCGA-60-2710-01 20 54824588 54824588 T C MC3R Missense_Mutation p.V230A 0.20 tolerated(0.76) benign(0.006) TCGA-60-2710-01 20 56138687 56138687 G T PCK1 Missense_Mutation p.G289W 0.35 deleterious(0) probably_damaging(1) TCGA-60-2710-01 20 5904465 5904465 G A CHGB Missense_Mutation p.E559K 0.28 deleterious(0.04) possibly_damaging(0.479) TCGA-60-2710-01 21 19744574 19744574 A T TMPRSS15 Silent p.A200A 0.34 TCGA-60-2710-01 21 34925604 34925604 C T SON Missense_Mutation p.A1356V 0.32 possibly_damaging(0.483) TCGA-60-2710-01 22 16151028 16151028 A G AP000525.9 RNA 0.26 TCGA-60-2710-01 22 25275485 25275485 T A SGSM1 Missense_Mutation p.F551Y 0.25 deleterious(0) probably_damaging(0.934) TCGA-60-2710-01 22 29138228 29138228 G C HSCB Missense_Mutation p.G49R 0.39 tolerated(0.08) benign(0.007) TCGA-60-2710-01 22 46655253 46655253 G A PKDREJ Missense_Mutation p.H1323Y 0.30 deleterious(0.03) possibly_damaging(0.808) TCGA-60-2710-01 2 111411055 111411055 C A BUB1 Missense_Mutation p.C641F 0.31 tolerated(0.3) benign(0.026) TCGA-60-2710-01 2 116593753 116593753 A T DPP10 Silent p.A661A 0.38 TCGA-60-2710-01 2 121043651 121043651 G A RALB Missense_Mutation p.E106K 0.04 tolerated(0.27) possibly_damaging(0.561) TCGA-60-2710-01 2 141055406 141055406 G T LRP1B Missense_Mutation p.P4313Q 0.29 benign(0.022) TCGA-60-2710-01 2 15607790 15607790 G A NBAS Silent p.S672S 0.27 TCGA-60-2710-01 2 164467190 164467190 G A FIGN Silent p.S384S 0.32 TCGA-60-2710-01 2 170094609 170094609 T C LRP2 Missense_Mutation p.R1500G 0.27 benign(0.347) TCGA-60-2710-01 2 185801543 185801543 G A ZNF804A Missense_Mutation p.D474N 0.30 deleterious(0.05) possibly_damaging(0.505) TCGA-60-2710-01 2 185803089 185803089 C A ZNF804A Missense_Mutation p.T989N 0.33 tolerated(0.28) benign(0.312) TCGA-60-2710-01 2 212285214 212285214 G A ERBB4 Silent p.N1029N 0.21 TCGA-60-2710-01 2 227876905 227876905 C A COL4A4 Missense_Mutation p.G1442V 0.35 unknown(0) TCGA-60-2710-01 2 228678678 228678678 A C CCL20 Silent p.L17L 0.30 TCGA-60-2710-01 2 234858695 234858695 C A TRPM8 Missense_Mutation p.L349M 0.28 deleterious(0) benign(0.377) TCGA-60-2710-01 2 3652013 3652013 C A COLEC11 Missense_Mutation p.A42D 0.25 tolerated(0.2) benign(0.139) TCGA-60-2710-01 2 37376142 37376142 A C EIF2AK2 5'UTR 0.26 TCGA-60-2710-01 2 37872920 37872924 TTTGT - CDC42EP3 3'UTR 0.33 TCGA-60-2710-01 2 44428979 44428979 G T PPM1B Missense_Mutation p.G214V 0.33 deleterious(0.01) probably_damaging(0.989) TCGA-60-2710-01 2 47300936 47300936 G C TTC7A Missense_Mutation p.Q817H 0.37 tolerated(0.26) benign(0.043) TCGA-60-2710-01 2 64779427 64779427 G T AFTPH Silent p.L273L 0.39 TCGA-60-2710-01 2 66662966 66662966 T G MEIS1 5'UTR 0.22 TCGA-60-2710-01 2 97526534 97526534 G A SEMA4C Silent p.H777H 0.25 TCGA-60-2710-01 2 97526535 97526535 T A SEMA4C Missense_Mutation p.H777L 0.25 tolerated(0.38) benign(0.015) TCGA-60-2710-01 3 100961722 100961722 C A IMPG2 Silent p.T944T 0.59 TCGA-60-2710-01 3 101369937 101369937 C A ZBTB11 3'UTR 0.12 TCGA-60-2710-01 3 109128861 109128861 G A RP11-702L6.4 RNA 0.10 TCGA-60-2710-01 3 111705116 111705116 A T ABHD10 Missense_Mutation p.D111V 0.48 deleterious(0.02) possibly_damaging(0.739) TCGA-60-2710-01 3 111983116 111983116 G A SLC9C1 Missense_Mutation p.T318I 0.11 deleterious(0.03) benign(0.302) TCGA-60-2710-01 3 121217339 121217339 A - POLQ Frame_Shift_Del p.M713Rfs*14 0.24 TCGA-60-2710-01 3 121340300 121340300 G T FBXO40 Silent p.P8P 0.37 TCGA-60-2710-01 3 136665037 136665037 A G NCK1 Missense_Mutation p.N280S 0.18 tolerated(0.11) benign(0.045) TCGA-60-2710-01 3 149374963 149374963 C A WWTR1 Missense_Mutation p.R44L 0.24 deleterious(0) probably_damaging(0.973) TCGA-60-2710-01 3 161221714 161221714 C A OTOL1 Missense_Mutation p.S473Y 0.24 tolerated_low_confidence(1) benign(0.337) TCGA-60-2710-01 3 178968856 178968856 A C KCNMB3 Missense_Mutation p.H12Q 0.12 deleterious_low_confidence(0.02) benign(0.009) TCGA-60-2710-01 3 182871775 182871775 C T LAMP3 Missense_Mutation p.V152I 0.07 tolerated(0.26) benign(0.025) TCGA-60-2710-01 3 193029676 193029676 A G ATP13A5 Missense_Mutation p.C792R 0.11 tolerated(0.55) benign(0.102) TCGA-60-2710-01 3 197665624 197665624 T G IQCG Missense_Mutation p.T104P 0.08 tolerated(0.2) benign(0.084) TCGA-60-2710-01 3 39169890 39169890 C T TTC21A Missense_Mutation p.H538Y 0.51 deleterious(0.03) benign(0.25) TCGA-60-2710-01 3 71745664 71745664 C A EIF4E3 Nonsense_Mutation p.E118* 0.57 TCGA-60-2710-01 3 88205447 88205447 G T C3orf38 Missense_Mutation p.D218Y 0.48 deleterious(0) probably_damaging(0.994) TCGA-60-2710-01 3 89480438 89480438 G T EPHA3 Missense_Mutation p.V759L 0.46 deleterious(0.02) probably_damaging(0.972) TCGA-60-2710-01 3 96706702 96706702 C T EPHA6 Missense_Mutation p.R327W 0.14 deleterious(0) probably_damaging(1) TCGA-60-2710-01 4 119978598 119978598 C - SYNPO2 Frame_Shift_Del p.I1101Ffs*22 0.25 TCGA-60-2710-01 4 126238160 126238160 G T FAT4 Silent p.A198A 0.25 TCGA-60-2710-01 4 1379710 1379710 C T UVSSA Silent p.H697H 0.39 TCGA-60-2710-01 4 147442805 147442805 C A SLC10A7 Missense_Mutation p.G22V 0.29 tolerated(0.37) benign(0.001) TCGA-60-2710-01 4 159493927 159493927 C A RXFP1 Missense_Mutation p.Q43K 0.31 deleterious(0.01) probably_damaging(0.98) TCGA-60-2710-01 4 162577607 162577607 C A FSTL5 Missense_Mutation p.S256I 0.28 tolerated(0.07) benign(0.42) TCGA-60-2710-01 4 176594881 176594881 G T GPM6A Missense_Mutation p.L113I 0.25 tolerated(0.43) probably_damaging(0.999) TCGA-60-2710-01 4 183664378 183664378 C A TENM3 Silent p.V1145V 0.27 TCGA-60-2710-01 4 2944035 2944035 C T NOP14 Silent p.S645S 0.40 TCGA-60-2710-01 4 40245100 40245100 G A RHOH Missense_Mutation p.A32T 0.30 tolerated(0.06) benign(0.001) TCGA-60-2710-01 4 47556863 47556863 G A ATP10D Missense_Mutation p.D586N 0.24 deleterious(0) probably_damaging(0.997) TCGA-60-2710-01 4 5578063 5578063 T C EVC2 Missense_Mutation p.N1059S 0.48 tolerated(1) benign(0.004) TCGA-60-2710-01 4 5785432 5785432 A G EVC Missense_Mutation p.N573D 0.05 tolerated(1) benign(0) TCGA-60-2710-01 5 1278882 1278882 G T TERT Silent p.I720I 0.23 TCGA-60-2710-01 5 157218922 157218922 C T CLINT1 Missense_Mutation p.G390D 0.46 tolerated(0.19) benign(0.069) TCGA-60-2710-01 5 15937167 15937167 G A FBXL7 Missense_Mutation p.A450T 0.39 deleterious(0) probably_damaging(0.994) TCGA-60-2710-01 5 162917423 162917423 G T HMMR Missense_Mutation p.A664S 0.44 tolerated(0.19) possibly_damaging(0.547) TCGA-60-2710-01 5 2755292 2755292 G A C5orf38 3'UTR 0.32 TCGA-60-2710-01 5 39285184 39285184 G C C9 3'UTR 0.22 TCGA-60-2710-01 5 42801222 42801222 T C SEPP1 Missense_Mutation p.H249R 0.48 tolerated(0.06) possibly_damaging(0.548) TCGA-60-2710-01 5 50680535 50680535 G A ISL1 Silent p.G63G 0.23 TCGA-60-2710-01 5 50683365 50683365 G C ISL1 Missense_Mutation p.S87T 0.24 tolerated(0.26) benign(0.081) TCGA-60-2710-01 6 118596691 118596691 G T SLC35F1 Missense_Mutation p.W236L 0.21 tolerated(0.06) benign(0) TCGA-60-2710-01 6 12161866 12161866 A T HIVEP1 Missense_Mutation p.T2228S 0.20 tolerated(0.23) benign(0.027) TCGA-60-2710-01 6 135511481 135511481 G A MYB Missense_Mutation p.G175R 0.22 deleterious(0) probably_damaging(0.99) TCGA-60-2710-01 6 151293098 151293098 G C MTHFD1L Missense_Mutation p.V677L 0.31 deleterious(0) probably_damaging(0.989) TCGA-60-2710-01 6 151917692 151917692 G A CCDC170 Missense_Mutation p.A564T 0.35 deleterious(0.01) benign(0.253) TCGA-60-2710-01 6 166572066 166572066 T A T Missense_Mutation p.S349C 0.32 tolerated(0.38) benign(0.022) TCGA-60-2710-01 6 170628197 170628197 C G FAM120B Missense_Mutation p.D573E 0.32 deleterious(0.02) possibly_damaging(0.747) TCGA-60-2710-01 6 26056216 26056216 C T HIST1H1C Silent p.P147P 0.30 TCGA-60-2710-01 6 28227222 28227222 G T NKAPL Missense_Mutation p.G25W 0.35 deleterious(0) unknown(0) TCGA-60-2710-01 6 29595348 29595348 G C GABBR1 Missense_Mutation p.A191G 0.30 deleterious(0.03) benign(0.189) TCGA-60-2710-01 6 32905205 32905205 G T HLA-DMB Silent p.T122T 0.29 TCGA-60-2710-01 6 35782540 35782540 C A LHFPL5 Missense_Mutation p.D210E 0.40 tolerated(1) benign(0.063) TCGA-60-2710-01 6 49696509 49696509 G A CRISP3 Silent p.T247T 0.16 TCGA-60-2710-01 6 7374335 7374336 - T CAGE1 Frame_Shift_Ins p.N239Kfs*7 0.25 TCGA-60-2710-01 6 76734920 76734920 T A IMPG1 Missense_Mutation p.I185F 0.31 tolerated(1) benign(0) TCGA-60-2710-01 6 84650271 84650271 G T CYB5R4 Missense_Mutation p.D433Y 0.23 deleterious(0) probably_damaging(0.992) TCGA-60-2710-01 6 99282745 99282745 G C POU3F2 5'UTR 0.38 TCGA-60-2710-01 7 138764222 138764222 C G ZC3HAV1 Missense_Mutation p.V489L 0.19 tolerated(0.48) possibly_damaging(0.785) TCGA-60-2710-01 7 142162145 142162145 G T TRBV6-6 Missense_Mutation p.Q44K 0.33 deleterious(0) probably_damaging(0.998) TCGA-60-2710-01 7 142612065 142612065 T C TRPV5 Missense_Mutation p.I480V 0.21 tolerated(0.17) benign(0.173) TCGA-60-2710-01 7 1477944 1477944 G A MICALL2 Missense_Mutation p.T723M 0.12 deleterious(0.03) possibly_damaging(0.742) TCGA-60-2710-01 7 150697679 150697679 A G NOS3 Missense_Mutation p.S409G 0.33 deleterious(0) probably_damaging(0.994) TCGA-60-2710-01 7 150746188 150746188 C A ASIC3 Missense_Mutation p.H72Q 0.26 deleterious(0.01) probably_damaging(0.956) TCGA-60-2710-01 7 151893021 151893021 T C KMT2C Missense_Mutation p.D1450G 0.31 probably_damaging(0.999) TCGA-60-2710-01 7 208896 208896 A C FAM20C Splice_Site p.X262_splice 0.38 TCGA-60-2710-01 7 27170284 27170284 G T HOXA4 Nonsense_Mutation p.Y23* 0.25 TCGA-60-2710-01 7 31378243 31378243 G C NEUROD6 Missense_Mutation p.P214A 0.28 tolerated(0.17) probably_damaging(0.945) TCGA-60-2710-01 7 48028393 48028393 C G SUN3 Missense_Mutation p.E316Q 0.11 tolerated(0.64) benign(0.032) TCGA-60-2710-01 7 77789561 77789561 G A MAGI2 Missense_Mutation p.P876S 0.35 deleterious(0.04) possibly_damaging(0.851) TCGA-60-2710-01 8 113657367 113657367 G T CSMD3 Missense_Mutation p.T1094K 0.20 deleterious(0.01) benign(0.02) TCGA-60-2710-01 8 143559650 143559650 C A BAI1 Missense_Mutation p.P497H 0.15 deleterious(0) probably_damaging(0.971) TCGA-60-2710-01 8 28827926 28827926 A G HMBOX1 Silent p.G130G 0.30 TCGA-60-2710-01 8 39606952 39606952 C T ADAM2 Silent p.K631K 0.32 TCGA-60-2710-01 8 55537767 55537767 C A RP1 Missense_Mutation p.A442E 0.30 tolerated(0.14) benign(0.004) TCGA-60-2710-01 8 61655401 61655402 - T CHD7 Frame_Shift_Ins p.L471Ffs*104 0.37 TCGA-60-2710-01 8 67357485 67357485 G T ADHFE1 Missense_Mutation p.G129V 0.31 tolerated(0.48) benign(0.098) TCGA-60-2710-01 9 104316311 104316311 A T RNF20 Missense_Mutation p.D648V 0.46 deleterious(0) probably_damaging(0.968) TCGA-60-2710-01 9 90500146 90500146 G A SPATA31E1 Silent p.P248P 0.14 TCGA-60-2710-01 9 916890 916890 C T DMRT1 Missense_Mutation p.P317L 0.49 deleterious(0.04) benign(0.004) TCGA-60-2710-01 X 100912250 100912250 T A ARMCX2 Missense_Mutation p.S109C 0.47 deleterious_low_confidence(0) possibly_damaging(0.533) TCGA-60-2710-01 X 107869498 107869498 C T COL4A5 Silent p.S1055S 0.14 TCGA-60-2710-01 X 109444273 109444273 C T AMMECR1 Missense_Mutation p.D266N 0.23 tolerated(0.14) benign(0.241) TCGA-60-2710-01 X 109694824 109694824 G C RGAG1 Missense_Mutation p.V327L 0.24 tolerated(0.13) benign(0.269) TCGA-60-2710-01 X 111002983 111002983 C A ALG13 Missense_Mutation p.S1057Y 0.20 deleterious(0) benign(0.34) TCGA-60-2710-01 X 111025340 111025340 A G TRPC5 Silent p.F641F 0.18 TCGA-60-2710-01 X 114422790 114422790 T A LRCH2 Missense_Mutation p.S165C 0.16 deleterious(0) probably_damaging(0.969) TCGA-60-2710-01 X 123615730 123615730 G T TENM1 Silent p.V1267V 0.41 TCGA-60-2710-01 X 128722228 128722228 C A OCRL Missense_Mutation p.P777T 0.21 tolerated(0.23) possibly_damaging(0.732) TCGA-60-2710-01 X 130419191 130419191 C T IGSF1 Nonsense_Mutation p.W210* 0.20 TCGA-60-2710-01 X 135067759 135067759 C T SLC9A6 Missense_Mutation p.A33V 0.27 tolerated_low_confidence(0.21) benign(0.002) TCGA-60-2710-01 X 152986426 152986426 A G BCAP31 Missense_Mutation p.W99R 0.39 deleterious(0) probably_damaging(0.995) TCGA-60-2710-01 X 152991559 152991559 C A ABCD1 Missense_Mutation p.R280S 0.35 deleterious(0) probably_damaging(0.998) TCGA-60-2710-01 X 153005583 153005583 A G ABCD1 Missense_Mutation p.N509S 0.19 deleterious(0) probably_damaging(0.988) TCGA-60-2710-01 X 153195637 153195637 C T NAA10 Missense_Mutation p.V171M 0.19 tolerated(0.1) benign(0.042) TCGA-60-2710-01 X 153279714 153279714 C T IRAK1 Missense_Mutation p.E440K 0.41 deleterious(0) probably_damaging(0.952) TCGA-60-2710-01 X 1714314 1714314 C T AKAP17A Missense_Mutation p.S267L 0.28 deleterious(0) probably_damaging(0.938) TCGA-60-2710-01 X 17745563 17745563 C T NHS Missense_Mutation p.H1092Y 0.29 deleterious(0.02) benign(0.008) TCGA-60-2710-01 X 18671607 18671607 G T CDKL5 Missense_Mutation p.Q1012H 0.17 deleterious_low_confidence(0) benign(0.216) TCGA-60-2710-01 X 18671608 18671608 G T CDKL5 Missense_Mutation p.V1013L 0.16 deleterious_low_confidence(0) benign(0.097) TCGA-60-2710-01 X 29938132 29938132 A C IL1RAPL1 Missense_Mutation p.E326D 0.31 tolerated(0.17) benign(0.017) TCGA-60-2710-01 X 46893157 46893157 G T JADE3 Missense_Mutation p.W274C 0.27 deleterious(0) probably_damaging(1) TCGA-60-2710-01 X 49142924 49142924 A C PPP1R3F Missense_Mutation p.E591A 0.29 tolerated_low_confidence(0.05) benign(0.285) TCGA-60-2710-01 X 53573708 53573708 A T HUWE1 Missense_Mutation p.V3572E 0.17 unknown(0) TCGA-60-2710-01 X 53596671 53596671 C A HUWE1 Silent p.G2143G 0.20 TCGA-60-2710-01 X 54321216 54321216 A G WNK3 Missense_Mutation p.V488A 0.22 deleterious(0) probably_damaging(0.997) TCGA-60-2710-01 X 62885773 62885773 C A ARHGEF9 Missense_Mutation p.C350F 0.22 deleterious(0.02) probably_damaging(0.994) TCGA-60-2710-01 X 63615301 63615301 G T MTMR8 5'UTR 0.22 TCGA-60-2710-01 X 65408293 65408293 C A HEPH Missense_Mutation p.H294N 0.32 deleterious(0) benign(0.397) TCGA-60-2710-01 X 70321032 70321032 C T FOXO4 Silent p.L318L 0.06 TCGA-60-2710-01 X 70328447 70328447 A C IL2RG Splice_Site p.X285_splice 0.32 TCGA-60-2710-01 X 70351922 70351922 G T MED12 Splice_Site p.X1374_splice 0.22 TCGA-60-2710-01 X 70351923 70351923 G T MED12 Nonsense_Mutation p.E1374* 0.22 TCGA-60-2710-01 X 79978075 79978075 C A BRWD3 Missense_Mutation p.G621V 0.23 tolerated(0.06) possibly_damaging(0.54) TCGA-60-2710-01 X 79999534 79999534 T A BRWD3 Silent p.I270I 0.23 TCGA-60-2710-01 X 88008902 88008902 C T CPXCR1 Nonsense_Mutation p.Q163* 0.21 TCGA-60-2710-01 X 91131779 91131779 G T PCDH11X Splice_Site p.X181_splice 0.22 TCGA-60-2711-01 10 103901185 103901185 A G PPRC1 Missense_Mutation p.S974G 0.22 deleterious_low_confidence(0.05) benign(0.046) TCGA-60-2711-01 10 104809514 104809514 G A CNNM2 Missense_Mutation p.D558N 0.18 deleterious(0) possibly_damaging(0.722) TCGA-60-2711-01 10 99667794 99667794 A T CRTAC1 Missense_Mutation p.F276I 0.15 deleterious(0) probably_damaging(0.954) TCGA-60-2711-01 11 134253790 134253790 G A B3GAT1 Silent p.R135R 0.30 TCGA-60-2711-01 11 3062109 3062109 C G CARS Intron 0.14 TCGA-60-2711-01 11 46418967 46418967 G A AMBRA1 3'UTR 0.21 TCGA-60-2711-01 11 4842815 4842815 G C OR51F2 Missense_Mutation p.R67P 0.19 tolerated(1) benign(0.003) TCGA-60-2711-01 11 55321900 55321900 C G OR4C15 Missense_Mutation p.L40V 0.19 tolerated_low_confidence(0.14) benign(0.008) TCGA-60-2711-01 11 58920509 58920509 A T FAM111A Silent p.L456L 0.27 TCGA-60-2711-01 11 67174428 67174428 T G TBC1D10C Missense_Mutation p.F260C 0.44 deleterious(0) probably_damaging(0.995) TCGA-60-2711-01 11 6789764 6789764 C A OR2AG2 Missense_Mutation p.W142L 0.23 tolerated(0.71) possibly_damaging(0.794) TCGA-60-2711-01 11 73021927 73021927 A G ARHGEF17 Silent p.E748E 0.20 TCGA-60-2711-01 11 89431699 89431699 A G FOLH1B RNA 0.50 TCGA-60-2711-01 11 92715352 92715352 G T MTNR1B Missense_Mutation p.R321S 0.21 deleterious(0.02) benign(0.129) TCGA-60-2711-01 11 94731718 94731718 G C KDM4D Silent p.G394G 0.29 TCGA-60-2711-01 12 112478342 112478342 T C NAA25 Silent p.K827K 0.18 TCGA-60-2711-01 12 11546585 11546585 G T PRB2 Missense_Mutation p.P143T 0.15 tolerated(0.41) unknown(0) TCGA-60-2711-01 12 133215752 133215752 C A POLE Silent p.L1837L 0.14 TCGA-60-2711-01 12 39763666 39763666 G A KIF21A Silent p.N105N 0.21 TCGA-60-2711-01 12 45173490 45173490 T A NELL2 Missense_Mutation p.T238S 0.18 tolerated(1) benign(0.033) TCGA-60-2711-01 13 113819369 113819369 C A PROZ Missense_Mutation p.Q192K 0.52 tolerated(0.88) benign(0.002) TCGA-60-2711-01 14 65253722 65253722 C T SPTB Silent p.L987L 0.39 TCGA-60-2711-01 15 25453266 25453266 G T SNORD115-21 RNA 0.27 TCGA-60-2711-01 15 25475985 25475985 G T SNORD115-33 RNA 0.35 TCGA-60-2711-01 15 25615718 25615718 C A UBE3A Missense_Mutation p.V538F 0.13 deleterious(0) benign(0.15) TCGA-60-2711-01 15 28421627 28421627 C A HERC2 Missense_Mutation p.E3211D 0.10 probably_damaging(0.999) TCGA-60-2711-01 15 31294195 31294195 G C TRPM1 Missense_Mutation p.L1587V 0.42 tolerated_low_confidence(0.65) benign(0.03) TCGA-60-2711-01 15 41819250 41819250 C A RPAP1 Missense_Mutation p.R588L 0.48 deleterious(0) possibly_damaging(0.535) TCGA-60-2711-01 15 42150811 42150811 C T SPTBN5 Missense_Mutation p.E2739K 0.61 benign(0.149) TCGA-60-2711-01 15 75586774 75586774 A G GOLGA6D Silent p.V680V 0.14 TCGA-60-2711-01 15 91293049 91293049 A T BLM Missense_Mutation p.Q184L 0.40 deleterious(0.01) possibly_damaging(0.507) TCGA-60-2711-01 16 20944647 20944647 C T DNAH3 Silent p.L4060L 0.13 TCGA-60-2711-01 16 2234823 2234823 A C CASKIN1 Nonsense_Mutation p.Y457* 0.41 TCGA-60-2711-01 16 23079455 23079455 G A USP31 Missense_Mutation p.P1324L 0.17 tolerated_low_confidence(0.19) possibly_damaging(0.866) TCGA-60-2711-01 16 23079989 23079989 T C USP31 Missense_Mutation p.K1146R 0.36 tolerated_low_confidence(1) probably_damaging(0.991) TCGA-60-2711-01 17 14139248 14139248 G C CDRT15 Silent p.L164L 0.12 TCGA-60-2711-01 17 59147363 59147363 C T BCAS3 Intron 0.22 TCGA-60-2711-01 17 61972738 61972738 G T CSH1 Intron 0.03 TCGA-60-2711-01 17 64738758 64738758 C G PRKCA Missense_Mutation p.N468K 0.14 deleterious(0) probably_damaging(1) TCGA-60-2711-01 17 65908159 65908159 A G BPTF Missense_Mutation p.K1387E 0.35 benign(0.358) TCGA-60-2711-01 17 7577145 7577146 - T TP53 Frame_Shift_Ins p.L265Tfs*7 0.37 TCGA-60-2711-01 17 78363638 78363638 G C RNF213 Missense_Mutation p.R5069T 0.74 possibly_damaging(0.835) TCGA-60-2711-01 17 78797061 78797061 C T RPTOR Intron 0.38 TCGA-60-2711-01 17 80211076 80211076 C A CSNK1D Silent p.R127R 0.15 TCGA-60-2711-01 17 8732154 8732154 G A PIK3R6 Missense_Mutation p.T348M 0.38 tolerated(0.24) benign(0.005) TCGA-60-2711-01 18 67563247 67563247 G A CD226 Silent p.H139H 0.12 TCGA-60-2711-01 19 14139151 14139151 C T RLN3 Silent p.F45F 0.65 TCGA-60-2711-01 19 15871684 15871684 G T LLNLR-249E10.1 RNA 0.55 TCGA-60-2711-01 19 21909693 21909693 G A ZNF100 Missense_Mutation p.A474V 0.22 tolerated(0.12) benign(0.003) TCGA-60-2711-01 19 33355535 33355535 C T SLC7A9 Missense_Mutation p.G79S 0.14 tolerated(0.06) possibly_damaging(0.513) TCGA-60-2711-01 19 38160634 38160634 G A ZNF781 Missense_Mutation p.T139I 0.05 tolerated(0.3) benign(0.134) TCGA-60-2711-01 19 38778547 38778547 G T SPINT2 Missense_Mutation p.R103S 0.20 tolerated(0.2) benign(0.028) TCGA-60-2711-01 19 44515581 44515581 G C ZNF230 Missense_Mutation p.D464H 0.20 tolerated(0.09) probably_damaging(0.937) TCGA-60-2711-01 19 46289601 46289601 C A DMWD Nonsense_Mutation p.E385* 0.29 TCGA-60-2711-01 19 46289602 46289602 C A DMWD Missense_Mutation p.E384D 0.28 tolerated(0.14) possibly_damaging(0.874) TCGA-60-2711-01 19 49622111 49622111 C G C19orf73 Missense_Mutation p.V57L 0.23 deleterious(0.04) possibly_damaging(0.621) TCGA-60-2711-01 19 54496036 54496036 A T CACNG6 5'UTR 0.41 TCGA-60-2711-01 19 55912914 55912922 CCCCTGGGG - UBE2S In_Frame_Del p.A184_G186del 0.21 TCGA-60-2711-01 19 6374904 6374904 C A ALKBH7 Silent p.R196R 0.35 TCGA-60-2711-01 19 6718267 6718267 C G C3 Missense_Mutation p.G142R 0.52 deleterious(0.01) benign(0.429) TCGA-60-2711-01 1 117150836 117150836 G A IGSF3 Missense_Mutation p.S317F 0.47 deleterious(0.01) probably_damaging(0.985) TCGA-60-2711-01 1 118623790 118623790 G C SPAG17 Missense_Mutation p.P715A 0.14 tolerated(0.15) benign(0.009) TCGA-60-2711-01 1 150256018 150256018 A T C1orf51 Missense_Mutation p.E114V 0.12 deleterious(0) probably_damaging(0.992) TCGA-60-2711-01 1 15986589 15986589 G T RSC1A1 Missense_Mutation p.D76Y 0.28 deleterious(0.01) probably_damaging(0.946) TCGA-60-2711-01 1 165370528 165370528 A G RXRG Missense_Mutation p.M455T 0.26 deleterious(0.04) probably_damaging(0.945) TCGA-60-2711-01 1 167095879 167095879 C T DUSP27 Missense_Mutation p.A504V 0.20 tolerated(0.43) benign(0.1) TCGA-60-2711-01 1 19209686 19209686 C T ALDH4A1 Missense_Mutation p.V204M 0.58 deleterious(0) probably_damaging(0.975) TCGA-60-2711-01 1 223983550 223983552 CGG AA TP53BP2 Frame_Shift_Del p.P897Ffs*30 0.29 TCGA-60-2711-01 1 45253092 45253092 G A BEST4 Missense_Mutation p.R67W 0.65 deleterious(0.01) possibly_damaging(0.863) TCGA-60-2711-01 1 93651976 93651976 G A CCDC18 Silent p.Q180Q 0.71 TCGA-60-2711-01 1 99772055 99772055 A G LPPR4 Missense_Mutation p.K594R 0.20 tolerated(0.12) benign(0.169) TCGA-60-2711-01 20 23666553 23666553 T A CST4 Missense_Mutation p.N135I 0.27 deleterious(0) benign(0.316) TCGA-60-2711-01 20 45976616 45976616 G A ZMYND8 Silent p.I23I 0.14 TCGA-60-2711-01 20 58318189 58318189 G A PHACTR3 Missense_Mutation p.R49H 0.33 tolerated(0.17) probably_damaging(0.998) TCGA-60-2711-01 21 45833791 45833791 G T TRPM2 Nonsense_Mutation p.E994* 0.60 TCGA-60-2711-01 2 136547235 136547235 G T LCT Silent p.I1823I 0.15 TCGA-60-2711-01 2 179633590 179633590 T A TTN Silent p.T2991T 0.17 TCGA-60-2711-01 2 237240050 237240050 C T IQCA1 Silent p.A775A 0.29 TCGA-60-2711-01 2 99013208 99013208 C A CNGA3 Silent p.G525G 0.40 TCGA-60-2711-01 3 129270138 129270138 C G H1FOO Missense_Mutation p.I332M 0.19 tolerated(0.06) possibly_damaging(0.669) TCGA-60-2711-01 3 130290178 130290178 G T COL6A6 Missense_Mutation p.G973V 0.47 deleterious(0.03) probably_damaging(0.975) TCGA-60-2711-01 3 145809643 145809643 G C PLOD2 Missense_Mutation p.Q275E 0.04 tolerated(0.32) benign(0.039) TCGA-60-2711-01 3 167254726 167254726 T A WDR49 Missense_Mutation p.K277I 0.03 deleterious(0) possibly_damaging(0.575) TCGA-60-2711-01 3 195492215 195492215 C T MUC4 Missense_Mutation p.G4575D 0.07 possibly_damaging(0.563) TCGA-60-2711-01 3 25674273 25674273 C G TOP2B Missense_Mutation p.V342L 0.34 deleterious(0) possibly_damaging(0.75) TCGA-60-2711-01 3 42906815 42906815 C T ACKR2 Missense_Mutation p.T274M 0.24 deleterious(0) possibly_damaging(0.463) TCGA-60-2711-01 3 48626760 48626760 C A COL7A1 Missense_Mutation p.A772S 0.27 unknown(0) TCGA-60-2711-01 3 49949259 49949259 C T MON1A Missense_Mutation p.A202T 0.61 tolerated(0.06) possibly_damaging(0.736) TCGA-60-2711-01 3 63967989 63967989 T C ATXN7 Missense_Mutation p.S294P 0.05 tolerated(0.05) probably_damaging(0.999) TCGA-60-2711-01 3 99897250 99897250 G A CMSS1 3'UTR 0.16 TCGA-60-2711-01 4 129964586 129964586 G C SCLT1 Missense_Mutation p.H66Q 0.20 tolerated(0.24) benign(0.009) TCGA-60-2711-01 4 155507372 155507372 C T FGA Silent p.A403A 0.30 TCGA-60-2711-01 4 177650829 177650829 G C VEGFC Silent p.L73L 0.23 TCGA-60-2711-01 4 178231014 178231014 C T NEIL3 5'UTR 0.33 TCGA-60-2711-01 4 42580397 42580397 G T ATP8A1 Silent p.G336G 0.19 TCGA-60-2711-01 4 49005780 49005780 C A CWH43 Nonsense_Mutation p.Y277* 0.21 TCGA-60-2711-01 4 57190272 57190272 C A KIAA1211 Silent p.V1127V 0.37 TCGA-60-2711-01 4 71508698 71508698 G A ENAM Missense_Mutation p.G519R 0.27 deleterious(0.02) possibly_damaging(0.874) TCGA-60-2711-01 4 86852093 86852093 G A ARHGAP24 Intron 0.18 TCGA-60-2711-01 4 90170453 90170453 A T GPRIN3 Missense_Mutation p.L270H 0.27 deleterious(0) probably_damaging(0.934) TCGA-60-2711-01 5 1073810 1073810 C A SLC12A7 Missense_Mutation p.V727L 0.17 deleterious(0.03) probably_damaging(0.959) TCGA-60-2711-01 5 11199629 11199629 C T CTNND2 Missense_Mutation p.G636S 0.14 deleterious(0.01) probably_damaging(0.993) TCGA-60-2711-01 5 140250178 140250178 G A PCDHA11 Missense_Mutation p.R497Q 0.15 deleterious_low_confidence(0.03) benign(0.341) TCGA-60-2711-01 5 147029988 147029988 C A JAKMIP2 Silent p.L250L 0.11 TCGA-60-2711-01 5 17354404 17354404 G A CTD-2139B15.2 RNA 0.46 TCGA-60-2711-01 5 179996224 179996224 C G CNOT6 Nonsense_Mutation p.S381* 0.28 TCGA-60-2711-01 5 180374743 180374743 C A BTNL8 Intron 0.30 TCGA-60-2711-01 5 35065617 35065617 G A PRLR Silent p.S481S 0.46 TCGA-60-2711-01 5 39377138 39377138 C A DAB2 Missense_Mutation p.W584L 0.30 deleterious(0.01) probably_damaging(0.979) TCGA-60-2711-01 5 39382758 39382758 G C DAB2 Missense_Mutation p.Q435E 0.11 deleterious(0) possibly_damaging(0.81) TCGA-60-2711-01 5 45462055 45462055 T A HCN1 Missense_Mutation p.I302F 0.15 deleterious(0) probably_damaging(0.995) TCGA-60-2711-01 5 6611197 6611197 A T NSUN2 Missense_Mutation p.V366E 0.36 deleterious(0.01) probably_damaging(0.962) TCGA-60-2711-01 6 106554930 106554930 C A PRDM1 Silent p.R683R 0.18 TCGA-60-2711-01 6 116966902 116966902 C G ZUFSP Missense_Mutation p.G555A 0.14 deleterious(0) probably_damaging(0.91) TCGA-60-2711-01 6 127797341 127797341 C A SOGA3 Silent p.V610V 0.15 TCGA-60-2711-01 6 136582129 136582129 G C BCLAF1 3'UTR 0.17 TCGA-60-2711-01 6 161174085 161174085 A G PLG Missense_Mutation p.N809D 0.14 tolerated(0.19) benign(0.001) TCGA-60-2711-01 6 170627660 170627695 CCCTGAATCCAGGCGAGAAGTTCCCATGTGTTCAGA - FAM120B In_Frame_Del p.S397_E408del 0.10 TCGA-60-2711-01 6 3152808 3152808 G C BPHL Nonstop_Mutation p.*292Sext*21 0.18 TCGA-60-2711-01 6 49753637 49753637 A C PGK2 3'UTR 0.30 TCGA-60-2711-01 6 56471708 56471708 G C DST Intron 0.15 TCGA-60-2711-01 6 75831144 75831144 G T COL12A1 Silent p.A2320A 0.07 TCGA-60-2711-01 6 84234198 84234198 C T PRSS35 Silent p.T346T 0.23 TCGA-60-2711-01 7 100417826 100417829 CGGC - EPHB4 Frame_Shift_Del p.A300Sfs*34 0.45 TCGA-60-2711-01 7 101960886 101960886 A T SH2B2 Missense_Mutation p.H534L 0.10 deleterious(0) benign(0.355) TCGA-60-2711-01 7 106508490 106508490 G A PIK3CG Missense_Mutation p.V162I 0.28 tolerated(0.26) benign(0.362) TCGA-60-2711-01 7 122635004 122635004 G T TAS2R16 Missense_Mutation p.L229I 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-60-2711-01 7 143043685 143043685 C G CLCN1 Silent p.S766S 0.05 TCGA-60-2711-01 7 143747957 143747957 C G OR2A5 Missense_Mutation p.L155V 0.32 deleterious(0.04) probably_damaging(0.948) TCGA-60-2711-01 7 148815409 148815409 T C ZNF425 Missense_Mutation p.Y17C 0.20 deleterious(0) probably_damaging(1) TCGA-60-2711-01 7 19184757 19184757 C T FERD3L Missense_Mutation p.E77K 0.23 tolerated(0.12) benign(0.357) TCGA-60-2711-01 7 7476074 7476074 C T COL28A1 Silent p.G604G 0.29 TCGA-60-2711-01 7 93055693 93055693 A G CALCR Missense_Mutation p.I501T 0.03 tolerated(0.19) benign(0.01) TCGA-60-2711-01 7 94052323 94052340 GGTCCTCGTGGTGACCAA - COL1A2 In_Frame_Del p.R822_P827del 0.16 TCGA-60-2711-01 7 94898729 94898729 T A PPP1R9A Missense_Mutation p.S1012T 0.37 tolerated(0.18) benign(0.008) TCGA-60-2711-01 8 101154396 101154396 T A FBXO43 Missense_Mutation p.E29V 0.07 tolerated_low_confidence(0.08) benign(0.056) TCGA-60-2711-01 8 110439365 110439365 G A PKHD1L1 Missense_Mutation p.G994R 0.22 deleterious(0) possibly_damaging(0.773) TCGA-60-2711-01 8 113564904 113564904 A T CSMD3 Nonsense_Mutation p.L1427* 0.21 TCGA-60-2711-01 8 134145775 134145775 G C TG Missense_Mutation p.D2687H 0.24 tolerated(0.09) benign(0.266) TCGA-60-2711-01 8 141889697 141889697 G A PTK2 Missense_Mutation p.H79Y 0.16 tolerated(1) benign(0.02) TCGA-60-2711-01 8 141889698 141889698 C T PTK2 Silent p.K78K 0.17 TCGA-60-2711-01 8 145947101 145947101 T C ZNF251 Silent p.K648K 0.28 TCGA-60-2711-01 8 17412160 17412160 A G SLC7A2 Missense_Mutation p.K423E 0.39 deleterious(0.05) benign(0.013) TCGA-60-2711-01 8 17851086 17851086 G A PCM1 Silent p.R1595R 0.15 TCGA-60-2711-01 8 1950735 1950735 C A KBTBD11 Silent p.I459I 0.25 TCGA-60-2711-01 9 103066024 103066024 C A TEX10 Nonsense_Mutation p.E856* 0.25 TCGA-60-2711-01 9 129455586 129455586 C G LMX1B Missense_Mutation p.S242W 0.62 deleterious(0) probably_damaging(0.991) TCGA-60-2711-01 9 130688212 130688212 G T PIP5KL1 Missense_Mutation p.P233T 0.68 tolerated(0.07) possibly_damaging(0.639) TCGA-60-2711-01 9 21481486 21481486 G A IFNE Nonsense_Mutation p.Q70* 0.61 TCGA-60-2711-01 9 71094458 71094458 C A PGM5 Missense_Mutation p.H428Q 0.23 deleterious(0) benign(0.25) TCGA-60-2711-01 9 79985424 79985424 G A VPS13A Missense_Mutation p.R2946K 0.27 deleterious(0) probably_damaging(0.999) TCGA-60-2711-01 X 101096499 101096499 G T NXF5 Missense_Mutation p.P91H 0.19 deleterious(0) probably_damaging(0.998) TCGA-60-2711-01 X 120007820 120007820 C T CT47B1 Missense_Mutation p.G277D 0.15 tolerated(0.12) unknown(0) TCGA-60-2711-01 X 125299305 125299305 G C DCAF12L2 Silent p.A201A 0.17 TCGA-60-2711-01 X 144337261 144337261 C A SPANXN1 Nonsense_Mutation p.S49* 0.25 TCGA-60-2711-01 X 152959803 152959803 G T SLC6A8 Missense_Mutation p.G466V 0.22 deleterious(0) probably_damaging(0.965) TCGA-60-2711-01 X 153589928 153589928 A T FLNA Silent p.V985V 0.23 TCGA-60-2711-01 X 15381379 15381379 C T FIGF Silent p.E51E 0.23 TCGA-60-2711-01 X 18956828 18956828 G A PHKA2 Missense_Mutation p.L320F 0.05 tolerated(0.06) probably_damaging(0.934) TCGA-60-2711-01 X 3235500 3235500 C A MXRA5 Silent p.A2074A 0.36 TCGA-60-2711-01 X 48761911 48761911 C A SLC35A2 Intron 0.18 TCGA-60-2711-01 X 84502615 84502615 C G ZNF711 Missense_Mutation p.P13A 0.19 tolerated_low_confidence(0.13) benign(0.001) TCGA-60-2711-01 X 99551335 99551335 C A PCDH19 Silent p.L1129L 0.18 TCGA-60-2712-01 10 129905289 129905289 C G MKI67 Missense_Mutation p.M1605I 0.31 tolerated(0.33) benign(0.001) TCGA-60-2712-01 10 26463194 26463194 G T MYO3A Missense_Mutation p.R1334M 0.22 deleterious_low_confidence(0.01) benign(0.289) TCGA-60-2712-01 10 55582413 55582413 A T PCDH15 Missense_Mutation p.S1693R 0.22 deleterious_low_confidence(0.04) benign(0.002) TCGA-60-2712-01 10 69881497 69881497 C A MYPN Missense_Mutation p.S101Y 0.27 tolerated(0.06) benign(0.309) TCGA-60-2712-01 10 69881505 69881505 C G MYPN Missense_Mutation p.Q104E 0.26 tolerated(0.36) benign(0.002) TCGA-60-2712-01 11 111385572 111385572 G T C11orf88 Silent p.P21P 0.24 TCGA-60-2712-01 11 116728678 116728678 C T SIK3 Missense_Mutation p.G1062D 0.04 deleterious_low_confidence(0.01) benign(0.279) TCGA-60-2712-01 11 124310149 124310149 T A OR8B8 Missense_Mutation p.Y278F 0.25 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-60-2712-01 11 17531319 17531320 CG AGA USH1C Frame_Shift_Ins p.A533Lfs*10 0.32 TCGA-60-2712-01 11 18159777 18159777 G T MRGPRX3 3'UTR 0.16 TCGA-60-2712-01 11 28058212 28058212 C A KIF18A Splice_Site p.X650_splice 0.19 TCGA-60-2712-01 11 3845356 3845356 G C PGAP2 Missense_Mutation p.E198Q 0.19 deleterious(0.03) probably_damaging(0.953) TCGA-60-2712-01 11 56184914 56184914 A G OR5R1 Silent p.N265N 0.18 TCGA-60-2712-01 12 123481933 123481933 G A PITPNM2 Missense_Mutation p.L471F 0.12 deleterious(0) possibly_damaging(0.632) TCGA-60-2712-01 12 274626 274626 G T IQSEC3 Missense_Mutation p.K912N 0.22 deleterious(0) probably_damaging(0.95) TCGA-60-2712-01 12 44136321 44136321 A C PUS7L Missense_Mutation p.F434C 0.24 deleterious(0) probably_damaging(0.999) TCGA-60-2712-01 12 46756368 46756368 C A SLC38A2 Missense_Mutation p.W411C 0.19 tolerated(0.23) possibly_damaging(0.704) TCGA-60-2712-01 12 53215643 53215643 C G KRT79 3'UTR 0.22 TCGA-60-2712-01 12 53421697 53421697 G C EIF4B Missense_Mutation p.D267H 0.28 deleterious(0) possibly_damaging(0.861) TCGA-60-2712-01 12 75434783 75434783 G A KCNC2 3'UTR 0.39 TCGA-60-2712-01 12 96379721 96379721 C T HAL Missense_Mutation p.V391I 0.05 deleterious(0.02) probably_damaging(0.954) TCGA-60-2712-01 14 55878363 55878363 G A ATG14 Nonsense_Mutation p.Q60* 0.33 TCGA-60-2712-01 14 93142874 93142874 G A RIN3 Missense_Mutation p.R797H 0.11 deleterious(0) probably_damaging(0.998) TCGA-60-2712-01 14 94942565 94942565 C T SERPINA9 5'UTR 0.33 TCGA-60-2712-01 15 31334348 31334348 C T TRPM1 Silent p.Q648Q 0.38 TCGA-60-2712-01 16 31437543 31437543 C G ITGAD 3'UTR 0.30 TCGA-60-2712-01 16 89294533 89294533 G A ZNF778 Missense_Mutation p.G585R 0.28 deleterious(0) probably_damaging(1) TCGA-60-2712-01 17 18221387 18221392 AAGCCC - SMCR8 In_Frame_Del p.K762_P763del 0.42 TCGA-60-2712-01 17 3704418 3704418 C A ITGAE Silent p.L7L 0.43 TCGA-60-2712-01 17 38510742 38510742 C T RARA Silent p.I332I 0.23 TCGA-60-2712-01 17 7579312 7579312 C A TP53 Silent p.T125T 0.34 TCGA-60-2712-01 17 80136939 80136939 C A CCDC57 Missense_Mutation p.E446D 0.29 deleterious(0) probably_damaging(1) TCGA-60-2712-01 18 18547802 18547802 G A ROCK1 Nonsense_Mutation p.R1035* 0.25 TCGA-60-2712-01 18 334819 334819 G T COLEC12 Missense_Mutation p.P580H 0.16 tolerated(0.06) unknown(0) TCGA-60-2712-01 18 60241410 60241410 A C ZCCHC2 Missense_Mutation p.E699A 0.27 tolerated(0.34) benign(0.101) TCGA-60-2712-01 19 12541874 12541874 C T ZNF443 Missense_Mutation p.G371E 0.23 deleterious(0.02) probably_damaging(1) TCGA-60-2712-01 19 14069908 14069908 C T DCAF15 Missense_Mutation p.A279V 0.05 tolerated_low_confidence(0.41) benign(0.049) TCGA-60-2712-01 19 19338756 19338756 A T NCAN Missense_Mutation p.D776V 0.21 tolerated(0.15) benign(0.005) TCGA-60-2712-01 19 22942393 22942393 A G ZNF99 Silent p.C106C 0.20 TCGA-60-2712-01 19 39019663 39019663 C T RYR1 Silent p.L3703L 0.19 TCGA-60-2712-01 19 39384061 39384061 G T SIRT2 Missense_Mutation p.S73R 0.20 deleterious(0.01) possibly_damaging(0.802) TCGA-60-2712-01 19 40420081 40420081 C T FCGBP Silent p.V971V 0.12 TCGA-60-2712-01 19 48342889 48342889 G A CRX Missense_Mutation p.A189T 0.13 tolerated(0.44) benign(0.028) TCGA-60-2712-01 19 50358117 50358118 - A PTOV1 Frame_Shift_Ins p.M142Hfs*58 0.36 TCGA-60-2712-01 19 52327147 52327147 G T FPR3 Missense_Mutation p.W49L 0.24 deleterious(0) probably_damaging(0.998) TCGA-60-2712-01 19 54664257 54664257 G C TMC4 Missense_Mutation p.L673V 0.15 deleterious(0.02) benign(0.014) TCGA-60-2712-01 1 150131220 150131220 G T PLEKHO1 Missense_Mutation p.W244C 0.14 deleterious(0.01) probably_damaging(0.962) TCGA-60-2712-01 1 158325820 158325820 G T CD1E Missense_Mutation p.A277S 0.15 tolerated(0.08) benign(0.112) TCGA-60-2712-01 1 186862216 186862216 C A PLA2G4A Missense_Mutation p.F63L 0.24 tolerated(0.17) benign(0.027) TCGA-60-2712-01 1 197069639 197069639 G A ASPM Silent p.I2914I 0.07 TCGA-60-2712-01 1 203152863 203152863 G A CHI3L1 Missense_Mutation p.P124L 0.25 tolerated(0.06) benign(0.345) TCGA-60-2712-01 1 31907161 31907161 C T SERINC2 3'UTR 0.26 TCGA-60-2712-01 1 39823488 39823488 G A MACF1 Missense_Mutation p.E1894K 0.12 benign(0.096) TCGA-60-2712-01 1 76397634 76397634 G A ASB17 Missense_Mutation p.L115F 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.86) TCGA-60-2712-01 20 18374420 18374420 C T DZANK1 Missense_Mutation p.E582K 0.33 tolerated(0.47) benign(0.005) TCGA-60-2712-01 20 2818880 2818880 G A PCED1A Missense_Mutation p.P280L 0.12 tolerated(0.52) benign(0.001) TCGA-60-2712-01 20 3782409 3782409 G C CDC25B Missense_Mutation p.S294T 0.24 tolerated(1) benign(0.264) TCGA-60-2712-01 20 42744443 42744443 G T JPH2 Silent p.P624P 0.14 TCGA-60-2712-01 20 50408224 50408224 C - SALL4 Frame_Shift_Del p.Q266Hfs*24 0.14 TCGA-60-2712-01 21 33296887 33296887 C T HUNK Silent p.I123I 0.16 TCGA-60-2712-01 21 34003386 34003386 C A SYNJ1 Silent p.P1586P 0.21 TCGA-60-2712-01 22 32297747 32297747 C G DEPDC5 Nonsense_Mutation p.Y1456* 0.14 TCGA-60-2712-01 22 37334664 37334664 G T CSF2RB 3'UTR 0.23 TCGA-60-2712-01 2 10192505 10192505 G T KLF11 Silent p.T470T 0.22 TCGA-60-2712-01 2 102481430 102481430 C G MAP4K4 Silent p.S635S 0.36 TCGA-60-2712-01 2 116101417 116101417 C G DPP10 Missense_Mutation p.T71S 0.21 tolerated(1) benign(0.009) TCGA-60-2712-01 2 170068680 170068680 C A LRP2 Missense_Mutation p.M2026I 0.23 benign(0.001) TCGA-60-2712-01 2 179593377 179593377 C G TTN Missense_Mutation p.V6426L 0.30 TCGA-60-2712-01 2 200213525 200213525 C T SATB2 Missense_Mutation p.V358M 0.27 deleterious(0.01) possibly_damaging(0.86) TCGA-60-2712-01 2 209025628 209025628 C T CRYGA Missense_Mutation p.R142Q 0.23 tolerated(0.07) benign(0.142) TCGA-60-2712-01 2 210560619 210560619 A G MAP2 Missense_Mutation p.Q1242R 0.23 tolerated_low_confidence(1) benign(0.002) TCGA-60-2712-01 2 212812187 212812187 C T ERBB4 Missense_Mutation p.G130E 0.14 deleterious(0) probably_damaging(0.994) TCGA-60-2712-01 2 238991888 238991888 G A SCLY Splice_Site p.X268_splice 0.25 TCGA-60-2712-01 2 28802550 28802550 C T PLB1 Silent p.D514D 0.24 TCGA-60-2712-01 2 46597015 46597015 G C EPAS1 Missense_Mutation p.A277P 0.26 deleterious(0) probably_damaging(0.975) TCGA-60-2712-01 2 74594825 74594825 G C DCTN1 Missense_Mutation p.Q728E 0.24 tolerated(0.1) probably_damaging(0.996) TCGA-60-2712-01 2 74594981 74594981 G A DCTN1 Nonsense_Mutation p.Q676* 0.26 TCGA-60-2712-01 2 75745330 75745330 C T EVA1A 5'UTR 0.30 TCGA-60-2712-01 2 90249126 90249126 C A IGKV1D-43 Missense_Mutation p.Q28K 0.24 deleterious(0) probably_damaging(0.969) TCGA-60-2712-01 3 113379864 113379864 G T KIAA2018 Missense_Mutation p.P222H 0.39 possibly_damaging(0.717) TCGA-60-2712-01 3 140167502 140167502 G C CLSTN2 Missense_Mutation p.C310S 0.28 deleterious(0) probably_damaging(0.984) TCGA-60-2712-01 3 196051168 196051168 A G TM4SF19 Silent p.G141G 0.30 TCGA-60-2712-01 3 71090510 71090510 G A FOXP1 Nonsense_Mutation p.Q282* 0.33 TCGA-60-2712-01 3 85935470 85935470 G T CADM2 Missense_Mutation p.E167D 0.31 tolerated(0.06) benign(0.331) TCGA-60-2712-01 3 98073073 98073073 A G OR5K4 Missense_Mutation p.I126V 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-60-2712-01 4 123195521 123195521 G C KIAA1109 Missense_Mutation p.E2824Q 0.32 probably_damaging(0.993) TCGA-60-2712-01 4 158253997 158253997 C T GRIA2 Silent p.A303A 0.04 TCGA-60-2712-01 4 38945206 38945206 A T FAM114A1 3'UTR 0.46 TCGA-60-2712-01 4 887731 887731 G A GAK Nonsense_Mutation p.R270* 0.07 TCGA-60-2712-01 5 118465097 118465097 G T DMXL1 Missense_Mutation p.A432S 0.23 tolerated(0.83) benign(0.04) TCGA-60-2712-01 5 140800885 140800885 C T PCDHGA11 Nonsense_Mutation p.Q31* 0.27 TCGA-60-2712-01 5 153433099 153433099 G T MFAP3 Silent p.L305L 0.26 TCGA-60-2712-01 5 153433463 153433463 G A MFAP3 3'UTR 0.50 TCGA-60-2712-01 5 154320669 154320669 A G MRPL22 5'UTR 0.19 TCGA-60-2712-01 5 170818309 170818309 G T NPM1 Missense_Mutation p.V47F 0.25 deleterious(0.02) possibly_damaging(0.721) TCGA-60-2712-01 5 36985487 36985487 T C NIPBL Silent p.T735T 0.04 TCGA-60-2712-01 5 64756074 64756074 C T ADAMTS6 Missense_Mutation p.G185D 0.17 deleterious(0.01) probably_damaging(0.939) TCGA-60-2712-01 5 76633112 76633128 GGGGAAGTTCGCTCCCA - PDE8B Frame_Shift_Del p.G257Vfs*7 0.39 TCGA-60-2712-01 6 134495937 134495937 C T SGK1 Intron 0.13 TCGA-60-2712-01 6 14118266 14118266 G A CD83 Silent p.P41P 0.14 TCGA-60-2712-01 6 39563859 39563859 T G KIF6 Missense_Mutation p.I273L 0.25 deleterious(0) probably_damaging(0.993) TCGA-60-2712-01 6 84233224 84233224 G C PRSS35 Missense_Mutation p.E22Q 0.21 tolerated(0.11) possibly_damaging(0.513) TCGA-60-2712-01 7 106508035 106508035 T C PIK3CG Missense_Mutation p.V10A 0.21 tolerated_low_confidence(0.13) possibly_damaging(0.675) TCGA-60-2712-01 7 149419581 149419581 C - KRBA1 Frame_Shift_Del p.T180Pfs*36 0.35 TCGA-60-2712-01 7 21723442 21723442 G A DNAH11 Missense_Mutation p.R1841H 0.12 probably_damaging(0.999) TCGA-60-2712-01 7 34884573 34884573 T C NPSR1 Missense_Mutation p.Y275H 0.23 tolerated(0.06) probably_damaging(0.983) TCGA-60-2712-01 7 57188280 57188280 G T ZNF479 Missense_Mutation p.S281Y 0.23 tolerated(0.18) probably_damaging(0.943) TCGA-60-2712-01 7 70880936 70880936 G A WBSCR17 Silent p.V217V 0.22 TCGA-60-2712-01 7 83119520 83119520 C G SEMA3E Silent p.L62L 0.22 TCGA-60-2712-01 8 67578502 67578502 C T VCPIP1 Missense_Mutation p.R231Q 0.41 deleterious(0) probably_damaging(0.995) TCGA-60-2712-01 8 72935106 72935106 C - TRPA1 3'UTR 0.11 TCGA-60-2712-01 8 73850288 73850288 G A KCNB2 Missense_Mutation p.D900N 0.03 tolerated_low_confidence(0.06) benign(0.131) TCGA-60-2712-01 9 107367683 107367683 T A OR13C2 Missense_Mutation p.T76S 0.12 tolerated(1) benign(0.027) TCGA-60-2712-01 9 134504004 134504004 C G RAPGEF1 Missense_Mutation p.V318L 0.25 deleterious(0) possibly_damaging(0.729) TCGA-60-2712-01 9 138707778 138707778 C A CAMSAP1 Missense_Mutation p.A1449S 0.24 deleterious(0.02) possibly_damaging(0.727) TCGA-60-2712-01 9 16429961 16429961 A G BNC2 Intron 0.48 TCGA-60-2712-01 9 90502147 90502147 C A SPATA31E1 Silent p.T915T 0.34 TCGA-60-2712-01 9 95776282 95776282 T C FGD3 Splice_Site p.X394_splice 0.12 TCGA-60-2712-01 X 47432304 47432304 G A SYN1 Missense_Mutation p.R693C 0.32 deleterious(0) possibly_damaging(0.689) TCGA-60-2713-01 10 101668899 101668899 C T DNMBP Missense_Mutation p.M755I 0.37 tolerated(0.06) benign(0.049) TCGA-60-2713-01 10 104404932 104404932 G C TRIM8 Missense_Mutation p.R186S 0.50 tolerated(0.1) possibly_damaging(0.783) TCGA-60-2713-01 10 105484070 105484070 C G SH3PXD2A Missense_Mutation p.R119P 0.50 deleterious(0.04) possibly_damaging(0.68) TCGA-60-2713-01 10 118353871 118353871 C A PNLIPRP1 Intron 0.28 TCGA-60-2713-01 10 134015564 134015564 C A DPYSL4 Missense_Mutation p.L409M 0.13 deleterious(0.02) probably_damaging(0.974) TCGA-60-2713-01 10 15138369 15138369 T A C10orf111 Missense_Mutation p.Y152F 0.26 deleterious_low_confidence(0) unknown(0) TCGA-60-2713-01 10 15573126 15573126 C G ITGA8 Missense_Mutation p.A969P 0.30 tolerated(0.08) benign(0.24) TCGA-60-2713-01 10 21962303 21962303 G T MLLT10 Missense_Mutation p.S359I 0.27 deleterious(0.03) possibly_damaging(0.794) TCGA-60-2713-01 10 26534925 26534925 G C GAD2 Missense_Mutation p.E306Q 0.25 tolerated(0.09) benign(0.017) TCGA-60-2713-01 10 26998618 26998618 G T PDSS1 Missense_Mutation p.D130Y 0.32 deleterious(0) probably_damaging(0.979) TCGA-60-2713-01 10 35324157 35324157 C T CUL2 Silent p.L334L 0.14 TCGA-60-2713-01 10 50944484 50944484 C A OGDHL Silent p.T891T 0.38 TCGA-60-2713-01 10 61014018 61014018 A T FAM13C Intron 0.45 TCGA-60-2713-01 10 7205846 7205846 A T SFMBT2 Silent p.L857L 0.29 TCGA-60-2713-01 10 91198522 91198522 G C SLC16A12 Silent p.S289S 0.48 TCGA-60-2713-01 10 98416601 98416601 G A PIK3AP1 Missense_Mutation p.S174L 0.47 tolerated(0.05) benign(0.156) TCGA-60-2713-01 11 101786117 101786118 CG A KIAA1377 Frame_Shift_Del p.H36Ifs*8 0.29 TCGA-60-2713-01 11 102479831 102479831 T C MMP20 Splice_Site p.X217_splice 0.37 TCGA-60-2713-01 11 113209554 113209554 A G TTC12 Missense_Mutation p.K212R 0.30 deleterious(0.01) probably_damaging(0.983) TCGA-60-2713-01 11 113857739 113857739 C T HTR3A Missense_Mutation p.S408F 0.25 tolerated(0.47) benign(0.008) TCGA-60-2713-01 11 11962033 11962033 T G USP47 Missense_Mutation p.L683V 0.32 tolerated(0.34) possibly_damaging(0.881) TCGA-60-2713-01 11 126299112 126299112 G T KIRREL3 Silent p.R590R 0.32 TCGA-60-2713-01 11 128360362 128360362 C T ETS1 Silent p.G108G 0.19 TCGA-60-2713-01 11 20057511 20057511 C T NAV2 Silent p.D948D 0.18 TCGA-60-2713-01 11 2424286 2424286 T A TSSC4 Missense_Mutation p.H141Q 0.33 tolerated(0.59) benign(0.004) TCGA-60-2713-01 11 4928829 4928829 C A OR51A7 Missense_Mutation p.S77Y 0.31 deleterious(0) probably_damaging(0.977) TCGA-60-2713-01 11 50003189 50003189 C G OR4C12 Silent p.V283V 0.40 TCGA-60-2713-01 11 5344663 5344663 T A OR51B2 Missense_Mutation p.I289F 0.05 deleterious(0) probably_damaging(0.917) TCGA-60-2713-01 11 55065417 55065417 A G TRIM51HP RNA 0.28 TCGA-60-2713-01 11 55135622 55135622 A T OR4A15 Missense_Mutation p.Y88F 0.06 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-60-2713-01 11 55587510 55587510 T C OR5D18 Silent p.V135V 0.32 TCGA-60-2713-01 11 55655725 55655725 T A TRIM51 Missense_Mutation p.V242E 0.23 deleterious(0.05) possibly_damaging(0.617) TCGA-60-2713-01 11 57571186 57571187 AT - CTNND1 Frame_Shift_Del p.H505Lfs*8 0.36 TCGA-60-2713-01 11 59224895 59224895 G A OR4D6 Silent p.L154L 0.32 TCGA-60-2713-01 11 62063789 62063789 A G SCGB1D4 3'UTR 0.23 TCGA-60-2713-01 11 62416509 62416509 G C INTS5 Nonsense_Mutation p.S348* 0.41 TCGA-60-2713-01 11 6340741 6340741 G C PRKCDBP Silent p.G146G 0.36 TCGA-60-2713-01 11 6340742 6340742 C A PRKCDBP Missense_Mutation p.G146V 0.37 tolerated(0.06) benign(0.261) TCGA-60-2713-01 11 64013996 64013996 C T PPP1R14B Silent p.V50V 0.27 TCGA-60-2713-01 11 70333107 70333107 C T SHANK2 Silent p.R1098R 0.35 TCGA-60-2713-01 11 76900494 76900494 C G MYO7A Silent p.A1203A 0.31 TCGA-60-2713-01 11 89424278 89424278 C G FOLH1B RNA 0.23 TCGA-60-2713-01 11 89911209 89911209 G A NAALAD2 Silent p.L594L 0.33 TCGA-60-2713-01 12 100928734 100928734 A T NR1H4 Missense_Mutation p.Q232L 0.18 tolerated(0.69) benign(0.04) TCGA-60-2713-01 12 100957350 100957350 C A NR1H4 3'Flank 0.31 TCGA-60-2713-01 12 101295519 101295519 G T ANO4 5'UTR 0.29 TCGA-60-2713-01 12 10223737 10223737 T C CLEC1A 3'UTR 0.50 TCGA-60-2713-01 12 10342764 10342764 G T TMEM52B 3'UTR 0.26 TCGA-60-2713-01 12 110902989 110902989 A C GPN3 Missense_Mutation p.C66G 0.17 tolerated(0.14) benign(0.005) TCGA-60-2713-01 12 112686205 112686205 T C HECTD4 Silent p.E1208E 0.39 TCGA-60-2713-01 12 133202806 133202806 T A POLE Missense_Mutation p.Q2143L 0.26 tolerated(0.16) benign(0.006) TCGA-60-2713-01 12 133363004 133363004 G A GOLGA3 Missense_Mutation p.A1015V 0.07 tolerated(0.29) benign(0.04) TCGA-60-2713-01 12 18691231 18691231 G A PIK3C2G Silent p.L1114L 0.33 TCGA-60-2713-01 12 47628923 47628923 A G PCED1B Missense_Mutation p.H26R 0.41 deleterious(0) benign(0.192) TCGA-60-2713-01 12 52163735 52163735 G T SCN8A Missense_Mutation p.E1152D 0.33 tolerated(0.1) probably_damaging(0.998) TCGA-60-2713-01 12 53680386 53680386 C T ESPL1 Missense_Mutation p.A1289V 0.40 tolerated(0.07) benign(0.094) TCGA-60-2713-01 12 59276795 59276795 G C LRIG3 Missense_Mutation p.L446V 0.31 deleterious(0.01) probably_damaging(0.951) TCGA-60-2713-01 12 6076765 6076765 C T VWF Missense_Mutation p.G2592R 0.41 deleterious(0) probably_damaging(0.995) TCGA-60-2713-01 12 7249253 7249253 C T C1RL Missense_Mutation p.E400K 0.29 tolerated(0.1) benign(0.15) TCGA-60-2713-01 12 7636217 7636217 C T CD163 Nonsense_Mutation p.W945* 0.30 TCGA-60-2713-01 12 82872893 82872893 A C METTL25 3'UTR 0.36 TCGA-60-2713-01 12 994619 994619 C G WNK1 Missense_Mutation p.S1550C 0.49 deleterious_low_confidence(0.02) benign(0.067) TCGA-60-2713-01 13 108882501 108882501 A G ABHD13 Missense_Mutation p.E312G 0.45 tolerated(0.31) benign(0.017) TCGA-60-2713-01 13 78192138 78192138 G A SCEL Splice_Site p.X524_splice 0.39 TCGA-60-2713-01 14 101526089 101526089 C G MIR541 5'Flank 0.47 TCGA-60-2713-01 14 102375969 102375969 G C PPP2R5C Missense_Mutation p.E430Q 0.45 deleterious(0) probably_damaging(0.92) TCGA-60-2713-01 14 42356319 42356319 G C LRFN5 Missense_Mutation p.W164S 0.48 deleterious(0) probably_damaging(1) TCGA-60-2713-01 14 42356320 42356320 G T LRFN5 Missense_Mutation p.W164C 0.47 deleterious(0) probably_damaging(1) TCGA-60-2713-01 14 58605845 58605845 A T C14orf37 Missense_Mutation p.S78T 0.05 tolerated(0.46) benign(0.294) TCGA-60-2713-01 14 75361058 75361058 A C DLST Missense_Mutation p.K239T 0.33 deleterious(0) probably_damaging(0.999) TCGA-60-2713-01 14 77245457 77245457 A T VASH1 3'UTR 0.63 TCGA-60-2713-01 14 88652016 88652016 A G KCNK10 Missense_Mutation p.C499R 0.52 deleterious_low_confidence(0.04) benign(0.058) TCGA-60-2713-01 14 89123748 89123748 G A EML5 Nonsense_Mutation p.Q1326* 0.33 TCGA-60-2713-01 14 95556996 95556996 C A DICER1 Missense_Mutation p.A1870S 0.51 tolerated(0.07) benign(0.401) TCGA-60-2713-01 15 21051222 21051222 C A POTEB2 Missense_Mutation p.R413M 0.15 deleterious(0.02) benign(0.143) TCGA-60-2713-01 15 25446307 25446307 T A SNORD115-19 5'Flank 0.41 TCGA-60-2713-01 15 28520140 28520140 G A HERC2 Missense_Mutation p.A185V 0.05 benign(0) TCGA-60-2713-01 15 34021227 34021227 A C RYR3 Silent p.T2401T 0.25 TCGA-60-2713-01 15 40594337 40594337 T G PLCB2 Missense_Mutation p.N169T 0.28 deleterious(0) possibly_damaging(0.72) TCGA-60-2713-01 15 41679764 41679764 C G NDUFAF1 Missense_Mutation p.D288H 0.31 deleterious(0) probably_damaging(0.999) TCGA-60-2713-01 15 44166046 44166046 G T FRMD5 3'UTR 0.09 TCGA-60-2713-01 15 55838348 55838348 G T PYGO1 Missense_Mutation p.A378D 0.32 deleterious(0) probably_damaging(0.964) TCGA-60-2713-01 15 91550786 91550786 C T VPS33B Nonsense_Mutation p.W172* 0.28 TCGA-60-2713-01 16 11217769 11217769 C T CLEC16A Silent p.I813I 0.63 TCGA-60-2713-01 16 20975048 20975048 C T DNAH3 Silent p.K3386K 0.26 TCGA-60-2713-01 16 21702908 21702908 T A OTOA Silent p.S213S 0.44 TCGA-60-2713-01 16 22926300 22926300 C T HS3ST2 Missense_Mutation p.T174M 0.46 deleterious(0) probably_damaging(1) TCGA-60-2713-01 16 3026838 3026838 G A PKMYT1 Missense_Mutation p.P69S 1.00 tolerated(0.85) benign(0.001) TCGA-60-2713-01 16 48264455 48264455 C T ABCC11 Nonsense_Mutation p.W43* 0.59 TCGA-60-2713-01 16 49669764 49669764 G C ZNF423 Missense_Mutation p.A1100G 0.33 tolerated(0.4) benign(0) TCGA-60-2713-01 16 56928501 56928501 G A SLC12A3 Silent p.K869K 0.47 TCGA-60-2713-01 16 57059739 57059739 T C NLRC5 Missense_Mutation p.L295P 0.09 deleterious(0) probably_damaging(1) TCGA-60-2713-01 16 69074235 69074235 G T TANGO6 Missense_Mutation p.A1007S 0.36 tolerated(0.26) benign(0.171) TCGA-60-2713-01 16 71096233 71096233 A T HYDIN Missense_Mutation p.C739S 0.40 benign(0.015) TCGA-60-2713-01 16 77850862 77850862 A G VAT1L Missense_Mutation p.D93G 0.48 deleterious(0.03) probably_damaging(0.986) TCGA-60-2713-01 17 11648123 11648123 G A DNAH9 Missense_Mutation p.D2041N 0.38 probably_damaging(1) TCGA-60-2713-01 17 36093800 36093800 C A HNF1B Missense_Mutation p.V187F 0.32 tolerated(0.05) benign(0.195) TCGA-60-2713-01 17 4644148 4644148 C T ZMYND15 Missense_Mutation p.P102L 0.50 deleterious_low_confidence(0.02) possibly_damaging(0.627) TCGA-60-2713-01 17 56052036 56052036 G A VEZF1 Missense_Mutation p.T455I 0.20 deleterious_low_confidence(0) benign(0.035) TCGA-60-2713-01 17 72588710 72588710 G A C17orf77 Silent p.T175T 0.15 TCGA-60-2713-01 17 7579470 7579471 CG A TP53 Frame_Shift_Del p.V73Wfs*50 0.38 TCGA-60-2713-01 17 7637984 7637984 G A DNAH2 Silent p.S312S 0.55 TCGA-60-2713-01 17 78221984 78221984 G T SLC26A11 Missense_Mutation p.Q450H 0.69 deleterious(0) possibly_damaging(0.894) TCGA-60-2713-01 17 8215685 8215685 C A ARHGEF15 Missense_Mutation p.P110T 0.45 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-60-2713-01 17 8770917 8770917 C A PIK3R6 5'UTR 0.49 TCGA-60-2713-01 18 10677834 10677834 T C PIEZO2 Missense_Mutation p.D2551G 0.35 tolerated(0.41) benign(0.004) TCGA-60-2713-01 18 52609983 52609983 C A CCDC68 Missense_Mutation p.D14Y 0.26 deleterious(0.02) benign(0.253) TCGA-60-2713-01 18 59166691 59166691 T A CDH20 Silent p.T173T 0.31 TCGA-60-2713-01 18 61067385 61067385 G C VPS4B Missense_Mutation p.S229C 0.29 deleterious(0.01) probably_damaging(0.996) TCGA-60-2713-01 18 743305 743305 G A YES1 Silent p.L279L 0.29 TCGA-60-2713-01 19 10904484 10904484 C T DNM2 Nonsense_Mutation p.R361* 0.30 TCGA-60-2713-01 19 17722649 17722649 T C UNC13A Missense_Mutation p.D1525G 0.04 tolerated(0.14) probably_damaging(0.995) TCGA-60-2713-01 19 30935683 30935683 C T ZNF536 Missense_Mutation p.S405F 0.15 tolerated(0.09) benign(0.265) TCGA-60-2713-01 19 39008173 39008173 G A RYR1 Missense_Mutation p.R3287H 0.45 benign(0.094) TCGA-60-2713-01 19 39989646 39989646 C A DLL3 Missense_Mutation p.S11Y 0.33 tolerated(0.09) benign(0.08) TCGA-60-2713-01 19 41074173 41074173 G A SPTBN4 Missense_Mutation p.G2314E 0.45 tolerated_low_confidence(0.15) probably_damaging(0.986) TCGA-60-2713-01 19 45175169 45175169 C T CEACAM19 5'UTR 0.14 TCGA-60-2713-01 19 45179577 45179577 C T CEACAM19 Silent p.P153P 0.26 TCGA-60-2713-01 19 45864870 45864870 C T ERCC2 Silent p.L383L 0.31 TCGA-60-2713-01 19 49846506 49846506 C G TEAD2 Missense_Mutation p.Q357H 0.26 deleterious(0) possibly_damaging(0.862) TCGA-60-2713-01 19 51021853 51021853 G C LRRC4B Missense_Mutation p.L373V 0.37 tolerated(0.14) benign(0.034) TCGA-60-2713-01 19 51452339 51452339 A T KLK5 Missense_Mutation p.L123Q 0.30 deleterious(0.01) probably_damaging(0.986) TCGA-60-2713-01 19 53994933 53994933 G C ZNF813 Missense_Mutation p.V483L 0.37 tolerated(0.3) benign(0.023) TCGA-60-2713-01 19 55014040 55014040 G C LAIR2 5'UTR 0.38 TCGA-60-2713-01 19 55144573 55144573 C T LILRB1 Silent p.F355F 0.28 TCGA-60-2713-01 19 55331449 55331449 C A KIR3DL1 Missense_Mutation p.L213M 0.29 deleterious(0.04) possibly_damaging(0.848) TCGA-60-2713-01 19 8174207 8174207 C A FBN3 Missense_Mutation p.A1508S 0.27 tolerated(0.48) possibly_damaging(0.882) TCGA-60-2713-01 1 103548429 103548429 C A COL11A1 Missense_Mutation p.G69V 0.23 probably_damaging(0.993) TCGA-60-2713-01 1 104114855 104114855 G T AMY2B Missense_Mutation p.V98L 0.26 tolerated(0.05) benign(0.029) TCGA-60-2713-01 1 114499410 114499410 T G HIPK1 Silent p.L523L 0.06 TCGA-60-2713-01 1 120512258 120512258 G A NOTCH2 Silent p.N328N 0.29 TCGA-60-2713-01 1 12907844 12907844 G T HNRNPCL1 Nonsense_Mutation p.S100* 0.14 TCGA-60-2713-01 1 149785117 149785117 G C HIST2H3D Missense_Mutation p.H40Q 0.12 deleterious_low_confidence(0.01) benign(0.004) TCGA-60-2713-01 1 152279380 152279380 G T FLG Nonsense_Mutation p.S2661* 0.15 TCGA-60-2713-01 1 155880583 155880583 G A RIT1 Silent p.L7L 0.39 TCGA-60-2713-01 1 156452388 156452388 A G MEF2D Silent p.Y33Y 0.22 TCGA-60-2713-01 1 157514060 157514060 T G FCRL5 Missense_Mutation p.Q279P 0.24 tolerated(0.33) benign(0.005) TCGA-60-2713-01 1 161133756 161133756 C T USP21 Silent p.S401S 0.39 TCGA-60-2713-01 1 161519618 161519618 C A FCGR3A Missense_Mutation p.G6V 0.11 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-60-2713-01 1 161519619 161519619 C T FCGR3A Missense_Mutation p.G6R 0.11 deleterious_low_confidence(0) benign(0.145) TCGA-60-2713-01 1 161654816 161654816 G C RPL31P11 RNA 0.40 TCGA-60-2713-01 1 167097643 167097643 T C DUSP27 Missense_Mutation p.F1092S 0.47 deleterious(0.04) probably_damaging(0.999) TCGA-60-2713-01 1 16913756 16913756 C A NBPF1 Missense_Mutation p.R189S 0.11 tolerated(0.13) benign(0.402) TCGA-60-2713-01 1 173878825 173878825 G A SERPINC1 Silent p.L340L 0.27 TCGA-60-2713-01 1 175049472 175049472 G T TNN Missense_Mutation p.G320C 0.21 deleterious(0) probably_damaging(0.949) TCGA-60-2713-01 1 176998800 176998800 C T ASTN1 Missense_Mutation p.D364N 0.26 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-60-2713-01 1 179609057 179609057 G A TDRD5 Missense_Mutation p.R535K 0.21 tolerated(0.22) benign(0.024) TCGA-60-2713-01 1 179609058 179609058 G T TDRD5 Missense_Mutation p.R535S 0.21 deleterious(0.05) possibly_damaging(0.543) TCGA-60-2713-01 1 181708377 181708377 C T CACNA1E Missense_Mutation p.A1236V 0.44 deleterious(0) probably_damaging(0.95) TCGA-60-2713-01 1 183204853 183204853 G T LAMC2 Missense_Mutation p.G815V 0.13 tolerated(0.11) possibly_damaging(0.589) TCGA-60-2713-01 1 186303599 186303599 T C TPR Silent p.K1680K 0.24 TCGA-60-2713-01 1 186957570 186957570 C G PLA2G4A Missense_Mutation p.S727C 0.21 deleterious(0.03) probably_damaging(0.96) TCGA-60-2713-01 1 186957691 186957691 C G PLA2G4A 3'UTR 0.17 TCGA-60-2713-01 1 19018401 19018401 G T PAX7 Missense_Mutation p.R247L 0.39 deleterious(0) possibly_damaging(0.737) TCGA-60-2713-01 1 197086919 197086919 C T ASPM Silent p.Q1355Q 0.16 TCGA-60-2713-01 1 21952818 21952818 A G RAP1GAP Silent p.Y51Y 0.58 TCGA-60-2713-01 1 236976069 236976069 G A MTR Silent p.E178E 0.27 TCGA-60-2713-01 1 24121111 24121111 C T LYPLA2 Intron 0.45 TCGA-60-2713-01 1 248004991 248004991 C A OR11L1 Nonsense_Mutation p.E70* 0.48 TCGA-60-2713-01 1 248004992 248004992 C A OR11L1 Silent p.L69L 0.48 TCGA-60-2713-01 1 248458341 248458342 GG - OR2T12 Frame_Shift_Del p.P180Rfs*9 0.39 TCGA-60-2713-01 1 248790367 248790367 G - OR2T11 Frame_Shift_Del p.I23Lfs*5 0.35 TCGA-60-2713-01 1 36646047 36646047 C T MAP7D1 3'UTR 0.22 TCGA-60-2713-01 1 39330343 39330343 T C MYCBP Nonstop_Mutation p.*104Wext*9 0.06 TCGA-60-2713-01 1 44137484 44137484 G C KDM4A Missense_Mutation p.E558Q 0.20 tolerated(0.13) benign(0.001) TCGA-60-2713-01 1 47564825 47564825 G A CYP4Z1 Missense_Mutation p.M312I 0.25 deleterious(0.03) benign(0.322) TCGA-60-2713-01 1 67185013 67185013 C G SGIP1 Missense_Mutation p.A556G 0.31 tolerated(0.05) benign(0.084) TCGA-60-2713-01 1 67220352 67220352 C G TCTEX1D1 Nonsense_Mutation p.S4* 0.32 TCGA-60-2713-01 1 75229610 75229610 G A TYW3 Missense_Mutation p.R198K 0.29 tolerated(0.57) benign(0.002) TCGA-60-2713-01 1 76384752 76384752 T G ASB17 Missense_Mutation p.H258P 0.28 deleterious(0) possibly_damaging(0.904) TCGA-60-2713-01 1 87041018 87041018 G T CLCA4 Missense_Mutation p.G563C 0.29 deleterious(0) probably_damaging(1) TCGA-60-2713-01 1 87041019 87041019 G T CLCA4 Missense_Mutation p.G563V 0.30 deleterious(0) probably_damaging(1) TCGA-60-2713-01 1 90180640 90180640 A C LRRC8C 3'UTR 0.64 TCGA-60-2713-01 20 13463945 13463945 T C TASP1 Missense_Mutation p.E305G 0.33 deleterious(0.02) benign(0.213) TCGA-60-2713-01 20 2308867 2308867 C A TGM3 Missense_Mutation p.R397S 0.30 tolerated(0.32) benign(0.083) TCGA-60-2713-01 20 2591193 2591193 G T TMC2 Silent p.L514L 0.39 TCGA-60-2713-01 20 30737566 30737566 A T TM9SF4 Missense_Mutation p.I362F 0.37 deleterious(0.02) probably_damaging(0.972) TCGA-60-2713-01 20 43723628 43723628 G A KCNS1 Silent p.S488S 0.33 TCGA-60-2713-01 20 44277374 44277374 G A WFDC11 Missense_Mutation p.T83I 0.28 tolerated_low_confidence(0.35) benign(0.026) TCGA-60-2713-01 20 52198011 52198011 C G ZNF217 Missense_Mutation p.G452A 0.34 tolerated(0.55) possibly_damaging(0.556) TCGA-60-2713-01 20 7886836 7886836 G T HAO1 Missense_Mutation p.T229K 0.29 deleterious(0) probably_damaging(0.999) TCGA-60-2713-01 21 10863036 10863036 C G IGHV1OR21-1 Missense_Mutation p.A111G 0.09 deleterious(0.01) probably_damaging(0.981) TCGA-60-2713-01 21 10971318 10971318 G C TPTE Silent p.V13V 0.10 TCGA-60-2713-01 21 17214842 17214842 G T USP25 Nonsense_Mutation p.E774* 0.52 TCGA-60-2713-01 21 28305361 28305361 C T ADAMTS5 Silent p.T564T 0.15 TCGA-60-2713-01 21 32638871 32638871 T A TIAM1 Missense_Mutation p.T140S 0.34 tolerated_low_confidence(0.75) benign(0.002) TCGA-60-2713-01 21 37649359 37649359 G T DOPEY2 Silent p.P1891P 0.41 TCGA-60-2713-01 21 45095037 45095037 G T RRP1B Missense_Mutation p.G181V 0.36 deleterious(0.02) probably_damaging(1) TCGA-60-2713-01 22 23063547 23063547 C G IGLV3-19 Nonsense_Mutation p.S85* 0.32 TCGA-60-2713-01 2 105977584 105977584 A T FHL2 3'UTR 0.32 TCGA-60-2713-01 2 107040675 107040675 C G RGPD3 Missense_Mutation p.D1250H 0.26 deleterious(0) probably_damaging(0.971) TCGA-60-2713-01 2 109381112 109381112 G C RANBP2 Missense_Mutation p.V1373L 0.23 deleterious(0.04) possibly_damaging(0.625) TCGA-60-2713-01 2 116538554 116538554 T A DPP10 Missense_Mutation p.F493Y 0.29 deleterious(0) benign(0.082) TCGA-60-2713-01 2 130930227 130930227 A G SMPD4 Missense_Mutation p.F199L 0.56 tolerated(0.47) benign(0.002) TCGA-60-2713-01 2 152670727 152670727 C T ARL5A Missense_Mutation p.E71K 0.48 deleterious(0.01) benign(0.259) TCGA-60-2713-01 2 15557812 15557812 G C NBAS Missense_Mutation p.R868G 0.20 deleterious(0) benign(0.209) TCGA-60-2713-01 2 170557600 170557600 G A PHOSPHO2 Missense_Mutation p.R40Q 0.34 tolerated(0.56) benign(0.01) TCGA-60-2713-01 2 177017779 177017779 G T HOXD4 3'UTR 0.70 TCGA-60-2713-01 2 179399137 179399137 G C TTN Missense_Mutation p.Q34069E 0.49 TCGA-60-2713-01 2 179428869 179428869 C G TTN Missense_Mutation p.Q27330H 0.02 TCGA-60-2713-01 2 179435834 179435834 G A TTN Missense_Mutation p.P25009S 0.46 TCGA-60-2713-01 2 186670893 186670893 T C FSIP2 Silent p.F5709F 0.42 TCGA-60-2713-01 2 207026083 207026083 A T EEF1B2 Nonsense_Mutation p.K73* 0.06 TCGA-60-2713-01 2 231101851 231101851 G T SP140 Missense_Mutation p.C38F 0.39 tolerated(0.64) benign(0.002) TCGA-60-2713-01 2 61333770 61333770 G C KIAA1841 Missense_Mutation p.W528C 0.21 tolerated(0.16) benign(0.174) TCGA-60-2713-01 2 61333771 61333771 G T KIAA1841 Missense_Mutation p.G529C 0.21 deleterious(0.01) probably_damaging(0.956) TCGA-60-2713-01 2 63631451 63631451 A C WDPCP Silent p.G389G 0.04 TCGA-60-2713-01 2 71740924 71740924 G C DYSF Missense_Mutation p.G211A 0.34 tolerated(0.49) possibly_damaging(0.648) TCGA-60-2713-01 2 74605138 74605138 G A DCTN1 Missense_Mutation p.R90C 0.09 deleterious(0) probably_damaging(1) TCGA-60-2713-01 2 75917778 75917778 C G GCFC2 Missense_Mutation p.E404D 0.04 tolerated(0.08) benign(0.129) TCGA-60-2713-01 2 77745379 77745379 G T LRRTM4 Intron 0.62 TCGA-60-2713-01 2 90199034 90199034 C G IGKV1D-12 Silent p.A65A 0.28 TCGA-60-2713-01 2 9508556 9508556 C A ASAP2 Silent p.L488L 0.30 TCGA-60-2713-01 3 100064427 100064427 A G NIT2 Splice_Site p.X113_splice 0.17 TCGA-60-2713-01 3 108568089 108568089 C G TRAT1 Silent p.T97T 0.40 TCGA-60-2713-01 3 113327364 113327364 T C SIDT1 Silent p.N567N 0.52 TCGA-60-2713-01 3 116163909 116163909 G T LSAMP 5'UTR 0.14 TCGA-60-2713-01 3 121137266 121137266 C G STXBP5L Silent p.G1127G 0.18 TCGA-60-2713-01 3 122287963 122287963 C T DTX3L Missense_Mutation p.L343F 0.17 deleterious(0.04) possibly_damaging(0.799) TCGA-60-2713-01 3 122942494 122942494 C T SEC22A Nonsense_Mutation p.Q91* 0.23 TCGA-60-2713-01 3 124141740 124141740 A G KALRN Missense_Mutation p.H873R 0.16 tolerated(0.92) benign(0.003) TCGA-60-2713-01 3 129023673 129023673 G T HMCES 3'UTR 0.26 TCGA-60-2713-01 3 129389793 129389793 C A TMCC1 Missense_Mutation p.K297N 0.22 deleterious(0) possibly_damaging(0.762) TCGA-60-2713-01 3 133335770 133335770 C G TOPBP1 Splice_Site p.X1254_splice 0.56 TCGA-60-2713-01 3 133476704 133476704 T A TF Missense_Mutation p.F321Y 0.14 deleterious(0) probably_damaging(0.988) TCGA-60-2713-01 3 133560496 133560496 C T RAB6B Silent p.G47G 0.18 TCGA-60-2713-01 3 141295906 141295906 C G RASA2 Silent p.A516A 0.32 TCGA-60-2713-01 3 142188925 142188925 T C ATR Intron 0.22 TCGA-60-2713-01 3 148552387 148552387 A T CPB1 Nonsense_Mutation p.K84* 0.32 TCGA-60-2713-01 3 149048162 149048162 G T TM4SF18 Missense_Mutation p.N74K 0.22 tolerated(0.06) benign(0.16) TCGA-60-2713-01 3 151598764 151598764 G C SUCNR1 Missense_Mutation p.A145P 0.18 tolerated(0.12) probably_damaging(0.962) TCGA-60-2713-01 3 164735583 164735583 G T SI Missense_Mutation p.P1200Q 0.21 deleterious(0) benign(0.352) TCGA-60-2713-01 3 172166132 172166132 G A GHSR Silent p.S24S 0.31 TCGA-60-2713-01 3 2861191 2861191 G T CNTN4 Missense_Mutation p.R127I 0.54 deleterious(0) benign(0.287) TCGA-60-2713-01 3 36756930 36756930 C A DCLK3 Missense_Mutation p.W612C 0.45 deleterious(0) probably_damaging(0.998) TCGA-60-2713-01 3 45530201 45530201 C G LARS2 Missense_Mutation p.T379S 0.49 tolerated(0.16) benign(0.14) TCGA-60-2713-01 3 68934335 68934335 C A FAM19A4 Missense_Mutation p.R2M 0.42 deleterious_low_confidence(0.01) benign(0.121) TCGA-60-2713-01 3 99509631 99509631 G A COL8A1 Silent p.P35P 0.34 TCGA-60-2713-01 4 104044211 104044211 T G CENPE Missense_Mutation p.R2320S 0.38 benign(0.012) TCGA-60-2713-01 4 134072811 134072811 C A PCDH10 Missense_Mutation p.Q506K 0.30 tolerated(0.17) benign(0.232) TCGA-60-2713-01 4 138442370 138442370 C A PCDH18 Missense_Mutation p.G1074V 0.57 tolerated(0.21) benign(0.295) TCGA-60-2713-01 4 144135239 144135239 A G USP38 Missense_Mutation p.K704E 0.39 tolerated(0.67) benign(0.003) TCGA-60-2713-01 4 155287483 155287483 C A DCHS2 Missense_Mutation p.Q191H 0.43 tolerated(0.06) possibly_damaging(0.701) TCGA-60-2713-01 4 166996093 166996093 G A TLL1 Missense_Mutation p.S751N 0.37 deleterious(0) probably_damaging(0.989) TCGA-60-2713-01 4 3952902 3952902 C T FAM86EP Intron 0.40 TCGA-60-2713-01 4 46736935 46736935 C G COX7B2 3'UTR 0.31 TCGA-60-2713-01 4 52895916 52895916 G C SGCB Missense_Mutation p.I119M 0.32 deleterious(0) benign(0.238) TCGA-60-2713-01 4 71398326 71398326 G A AMTN 3'UTR 0.31 TCGA-60-2713-01 5 102440400 102440400 T C GIN1 Missense_Mutation p.I162V 0.47 tolerated(0.27) benign(0.001) TCGA-60-2713-01 5 140515935 140515935 G T PCDHB5 Missense_Mutation p.D307Y 0.52 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-60-2713-01 5 140725166 140725166 C T PCDHGA3 Silent p.Y522Y 0.48 TCGA-60-2713-01 5 146991901 146991901 G T JAKMIP2 Missense_Mutation p.Q794K 0.24 deleterious(0.01) possibly_damaging(0.879) TCGA-60-2713-01 5 150484827 150484827 G C ANXA6 Missense_Mutation p.D606E 0.42 tolerated(1) benign(0.076) TCGA-60-2713-01 5 32239230 32239230 C T MTMR12 Silent p.L407L 0.26 TCGA-60-2713-01 5 32400290 32400290 G A ZFR Missense_Mutation p.S512L 0.16 tolerated(0.09) unknown(0) TCGA-60-2713-01 5 41382113 41382113 C - PLCXD3 Frame_Shift_Del p.Q210Rfs*2 0.21 TCGA-60-2713-01 5 43446645 43446645 G C C5orf28 Silent p.L109L 0.26 TCGA-60-2713-01 5 54640937 54640937 G C SKIV2L2 Missense_Mutation p.D341H 0.47 deleterious(0.03) probably_damaging(0.928) TCGA-60-2713-01 6 110935687 110935687 T C CDK19 3'UTR 0.19 TCGA-60-2713-01 6 130154674 130154674 C G TMEM244 Missense_Mutation p.V84L 0.29 tolerated(0.16) benign(0.164) TCGA-60-2713-01 6 130762304 130762304 T G TMEM200A Missense_Mutation p.L246W 0.29 deleterious(0.02) possibly_damaging(0.787) TCGA-60-2713-01 6 132909864 132909864 C A TAAR5 Missense_Mutation p.S321I 0.34 deleterious(0) possibly_damaging(0.489) TCGA-60-2713-01 6 133078687 133078687 T A VNN2 Splice_Site p.X72_splice 0.29 TCGA-60-2713-01 6 133078907 133078907 T C VNN2 Missense_Mutation p.N39S 0.03 tolerated(0.32) benign(0.005) TCGA-60-2713-01 6 142539763 142539763 A G VTA1 Missense_Mutation p.T303A 0.35 deleterious(0.02) possibly_damaging(0.519) TCGA-60-2713-01 6 152546946 152546946 A C SYNE1 Silent p.A7087A 0.29 TCGA-60-2713-01 6 160908328 160908328 G T LPAL2 Intron 0.30 TCGA-60-2713-01 6 162394383 162394383 T A PARK2 Missense_Mutation p.I229F 0.04 deleterious(0.01) benign(0.005) TCGA-60-2713-01 6 27880034 27880034 A G OR2B2 Missense_Mutation p.W22R 0.26 tolerated(0.24) benign(0.008) TCGA-60-2713-01 6 36485579 36485579 C A STK38 Missense_Mutation p.E143D 0.32 tolerated(0.13) possibly_damaging(0.79) TCGA-60-2713-01 6 36982742 36982742 C G FGD2 Silent p.T319T 0.27 TCGA-60-2713-01 6 42613251 42613251 A G UBR2 Missense_Mutation p.I778V 0.31 tolerated(0.55) benign(0.011) TCGA-60-2713-01 6 43275417 43275417 G A CRIP3 Silent p.T87T 0.29 TCGA-60-2713-01 6 51798958 51798958 G A PKHD1 Missense_Mutation p.P2024L 0.30 tolerated(0.11) probably_damaging(1) TCGA-60-2713-01 6 51890901 51890901 G T PKHD1 Missense_Mutation p.S1236Y 0.34 deleterious(0.01) possibly_damaging(0.776) TCGA-60-2713-01 6 71003996 71003996 A G COL9A1 Silent p.S190S 0.28 TCGA-60-2713-01 6 83869602 83869602 A C DOPEY1 Missense_Mutation p.L2295F 0.26 deleterious(0.01) probably_damaging(0.987) TCGA-60-2713-01 6 84563453 84563453 C T RIPPLY2 Silent p.G45G 0.21 TCGA-60-2713-01 6 97247000 97247000 C A GPR63 Missense_Mutation p.W203L 0.30 deleterious(0) probably_damaging(0.999) TCGA-60-2713-01 7 103338356 103338356 T C RELN Missense_Mutation p.S363G 0.61 tolerated(0.27) benign(0.022) TCGA-60-2713-01 7 128034978 128034978 C T IMPDH1 Missense_Mutation p.M505I 0.66 deleterious(0.02) possibly_damaging(0.795) TCGA-60-2713-01 7 139754535 139754535 G C PARP12 Silent p.S263S 0.58 TCGA-60-2713-01 7 150923535 150923535 C G ABCF2 Missense_Mutation p.D4H 0.05 deleterious(0.01) probably_damaging(0.96) TCGA-60-2713-01 7 151273477 151273477 C A PRKAG2 Missense_Mutation p.S309I 0.54 deleterious(0) benign(0.188) TCGA-60-2713-01 7 155471376 155471376 C T RBM33 Silent p.F82F 0.60 TCGA-60-2713-01 7 19737831 19737831 T A TWISTNB 3'UTR 0.69 TCGA-60-2713-01 7 24881927 24881927 G C OSBPL3 Missense_Mutation p.L458V 0.03 tolerated(0.05) possibly_damaging(0.77) TCGA-60-2713-01 7 2577690 2577690 A C BRAT1 3'UTR 0.42 TCGA-60-2713-01 7 31792789 31792789 G A PDE1C 3'UTR 0.29 TCGA-60-2713-01 7 33423374 33423374 T C BBS9 Missense_Mutation p.V629A 0.24 tolerated(0.9) benign(0.009) TCGA-60-2713-01 7 38295956 38295956 G A TRGJP2 Missense_Mutation p.L15F 0.33 unknown(0) TCGA-60-2713-01 7 38357052 38357052 C T TRGV9 Silent p.G14G 0.41 TCGA-60-2713-01 7 54617718 54617718 G T VSTM2A Silent p.S163S 0.33 TCGA-60-2713-01 7 92164118 92164118 G A RBM48 Missense_Mutation p.R284H 0.05 deleterious(0.03) benign(0.13) TCGA-60-2713-01 7 92838131 92838131 A G HEPACAM2 Silent p.F258F 0.03 TCGA-60-2713-01 8 109797102 109797102 G C TMEM74 Missense_Mutation p.L76V 0.30 tolerated(0.43) benign(0.001) TCGA-60-2713-01 8 110461643 110461643 T G PKHD1L1 Missense_Mutation p.C2034W 0.27 deleterious(0) probably_damaging(0.994) TCGA-60-2713-01 8 113988344 113988344 C A CSMD3 Missense_Mutation p.G355V 0.22 tolerated(0.32) benign(0) TCGA-60-2713-01 8 116616439 116616439 C A TRPS1 Missense_Mutation p.S586I 0.31 deleterious_low_confidence(0) possibly_damaging(0.733) TCGA-60-2713-01 8 125131175 125131175 G T FER1L6 Missense_Mutation p.A1794S 0.25 deleterious(0.01) benign(0.066) TCGA-60-2713-01 8 143996584 143996584 A G CYP11B2 Missense_Mutation p.L158P 0.25 deleterious(0) probably_damaging(0.936) TCGA-60-2713-01 8 17611496 17611496 G C MTUS1 Silent p.A607A 0.54 TCGA-60-2713-01 8 26238529 26238529 T A BNIP3L 5'Flank 0.13 TCGA-60-2713-01 8 28047293 28047293 G T ELP3 3'UTR 0.66 TCGA-60-2713-01 8 49833898 49833898 C T SNAI2 5'UTR 0.46 TCGA-60-2713-01 8 53852603 53852603 G A NPBWR1 Missense_Mutation p.V46M 0.21 tolerated(0.09) benign(0.386) TCGA-60-2713-01 8 55539638 55539638 G C RP1 Missense_Mutation p.E1066Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-60-2713-01 8 76476304 76476304 G T HNF4G Missense_Mutation p.Q437H 0.30 tolerated_low_confidence(0.1) benign(0.01) TCGA-60-2713-01 8 77617281 77617281 G T ZFHX4 Missense_Mutation p.A320S 0.31 possibly_damaging(0.709) TCGA-60-2713-01 8 81733701 81733701 G A ZNF704 Silent p.I43I 0.32 TCGA-60-2713-01 8 94821290 94821290 T G TMEM67 Missense_Mutation p.N854K 0.30 tolerated(0.73) benign(0.268) TCGA-60-2713-01 9 113312235 113312235 G T SVEP1 Missense_Mutation p.N227K 0.26 probably_damaging(1) TCGA-60-2713-01 9 115598673 115598673 C G SNX30 Missense_Mutation p.I266M 0.43 deleterious(0) probably_damaging(0.996) TCGA-60-2713-01 9 115964868 115964868 T C FKBP15 Silent p.R147R 0.47 TCGA-60-2713-01 9 119977009 119977009 C G ASTN2 Missense_Mutation p.A215P 0.22 deleterious_low_confidence(0) unknown(0) TCGA-60-2713-01 9 131671419 131671419 G C LRRC8A Missense_Mutation p.G659A 0.33 tolerated(0.29) probably_damaging(0.995) TCGA-60-2713-01 9 136536678 136536678 C T SARDH Missense_Mutation p.D769N 0.30 tolerated(0.09) probably_damaging(0.989) TCGA-60-2713-01 9 139229007 139229007 G A GPSM1 Missense_Mutation p.G58S 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-60-2713-01 9 6254481 6254481 G T IL33 Missense_Mutation p.K180N 0.37 tolerated(0.11) benign(0.326) TCGA-60-2713-01 9 84530590 84530590 C A SPATA31D5P RNA 0.28 TCGA-60-2713-01 9 90502488 90502488 C G SPATA31E1 Missense_Mutation p.A1029G 0.34 tolerated(0.11) probably_damaging(0.914) TCGA-60-2713-01 9 91077445 91077445 G C SPIN1 Missense_Mutation p.V46L 0.20 tolerated(0.8) benign(0.001) TCGA-60-2713-01 X 101818290 101818290 A T NXF4 RNA 0.45 TCGA-60-2713-01 X 106331793 106331793 C G RBM41 Missense_Mutation p.G267A 0.58 tolerated(0.35) benign(0.004) TCGA-60-2713-01 X 133632689 133632689 A G HPRT1 Missense_Mutation p.Y195C 0.64 deleterious(0.01) benign(0.176) TCGA-60-2713-01 X 134987483 134987483 C G SAGE1 Nonsense_Mutation p.S129* 0.68 TCGA-60-2713-01 X 13727147 13727147 C T RAB9A Silent p.S94S 0.63 TCGA-60-2713-01 X 151123156 151123156 A G GABRE 3'UTR 0.70 TCGA-60-2713-01 X 2947377 2947377 A G ARSH Missense_Mutation p.Y430C 0.65 deleterious(0.01) possibly_damaging(0.88) TCGA-60-2713-01 X 71350235 71350235 C A RGAG4 Nonsense_Mutation p.E386* 0.53 TCGA-60-2714-01 10 101147604 101147604 C G CNNM1 Missense_Mutation p.L790V 0.19 tolerated(0.14) benign(0.395) TCGA-60-2714-01 10 101499525 101499525 G T CUTC Missense_Mutation p.M64I 0.32 tolerated(0.37) benign(0.001) TCGA-60-2714-01 10 102256081 102256081 G A SEC31B Silent p.A748A 0.30 TCGA-60-2714-01 10 106118306 106118306 G T CCDC147 Missense_Mutation p.V73L 0.20 tolerated(0.34) benign(0.012) TCGA-60-2714-01 10 106675611 106675611 C T SORCS3 Missense_Mutation p.T239I 0.11 deleterious(0) possibly_damaging(0.852) TCGA-60-2714-01 10 106976804 106976804 G C SORCS3 Silent p.A886A 0.20 TCGA-60-2714-01 10 113918113 113918113 T A GPAM Silent p.V647V 0.23 TCGA-60-2714-01 10 115355413 115355413 C T NRAP Missense_Mutation p.R1502Q 0.28 tolerated(0.35) probably_damaging(0.999) TCGA-60-2714-01 10 115355414 115355414 G C NRAP Missense_Mutation p.R1502G 0.29 tolerated(0.08) probably_damaging(1) TCGA-60-2714-01 10 116045935 116045935 G C VWA2 Missense_Mutation p.G412A 0.21 tolerated(1) benign(0.005) TCGA-60-2714-01 10 118969256 118969256 C T KCNK18 Nonsense_Mutation p.Q201* 0.28 TCGA-60-2714-01 10 124361384 124361384 T C DMBT1 Missense_Mutation p.Y1139H 0.21 tolerated(0.56) unknown(0) TCGA-60-2714-01 10 127455488 127455488 A T MMP21 Missense_Mutation p.Y485N 0.31 deleterious(0.01) possibly_damaging(0.9) TCGA-60-2714-01 10 128114439 128114439 C T C10orf90 Silent p.A698A 0.32 TCGA-60-2714-01 10 131636144 131636144 G A EBF3 3'UTR 0.17 TCGA-60-2714-01 10 133930639 133930639 A T JAKMIP3 Missense_Mutation p.Q65L 0.41 deleterious(0) probably_damaging(0.999) TCGA-60-2714-01 10 16949606 16949606 T C CUBN Missense_Mutation p.I2536V 0.06 tolerated(0.98) benign(0.035) TCGA-60-2714-01 10 16949607 16949607 C A CUBN Missense_Mutation p.E2535D 0.06 tolerated(0.19) possibly_damaging(0.601) TCGA-60-2714-01 10 18242343 18242343 G T SLC39A12 Silent p.L46L 0.24 TCGA-60-2714-01 10 20568674 20568674 T C PLXDC2 Missense_Mutation p.S506P 0.09 tolerated(0.23) probably_damaging(0.999) TCGA-60-2714-01 10 25464531 25464531 G T GPR158 Missense_Mutation p.W61L 0.30 tolerated(0.51) possibly_damaging(0.838) TCGA-60-2714-01 10 26359072 26359072 T A MYO3A Silent p.T401T 0.08 TCGA-60-2714-01 10 26442808 26442808 G T MYO3A Missense_Mutation p.V889F 0.25 tolerated(0.34) benign(0.039) TCGA-60-2714-01 10 26558102 26558102 A C GAD2 Missense_Mutation p.K325N 0.23 tolerated(0.2) benign(0.013) TCGA-60-2714-01 10 27702226 27702226 C A PTCHD3 Silent p.R318R 0.18 TCGA-60-2714-01 10 29578102 29578102 C A LYZL1 Missense_Mutation p.S19Y 0.23 tolerated_low_confidence(0.06) possibly_damaging(0.635) TCGA-60-2714-01 10 43018728 43018728 C A ZNF37BP RNA 0.18 TCGA-60-2714-01 10 47945377 47945377 G T FAM21B Silent p.R959R 0.48 TCGA-60-2714-01 10 49430385 49430385 G T FRMPD2 Missense_Mutation p.Q476K 0.29 deleterious(0.02) benign(0.093) TCGA-60-2714-01 10 50819122 50819122 G T SLC18A3 Silent p.R112R 0.10 TCGA-60-2714-01 10 52610495 52610495 G T A1CF Missense_Mutation p.T18K 0.29 tolerated(0.61) benign(0) TCGA-60-2714-01 10 54074371 54074371 A T DKK1 Silent p.A59A 0.25 TCGA-60-2714-01 10 55581652 55581652 T A PCDH15 Missense_Mutation p.E1947V 0.08 deleterious_low_confidence(0.03) unknown(0) TCGA-60-2714-01 10 63170407 63170407 G A TMEM26 Silent p.S260S 0.33 TCGA-60-2714-01 10 64136229 64136229 A C ZNF365 Missense_Mutation p.K93Q 0.14 tolerated_low_confidence(0.09) possibly_damaging(0.903) TCGA-60-2714-01 10 68687061 68687061 C T LRRTM3 Silent p.F129F 0.21 TCGA-60-2714-01 10 69299366 69299366 C A CTNNA3 Missense_Mutation p.R118S 0.34 deleterious(0) possibly_damaging(0.537) TCGA-60-2714-01 10 69299367 69299367 C A CTNNA3 Missense_Mutation p.R118M 0.34 deleterious(0) possibly_damaging(0.803) TCGA-60-2714-01 10 69970243 69970243 C A MYPN 3'UTR 0.28 TCGA-60-2714-01 10 70432749 70432749 G T TET1 Missense_Mutation p.G1591C 0.19 deleterious(0) probably_damaging(0.992) TCGA-60-2714-01 10 70432750 70432750 G T TET1 Missense_Mutation p.G1591V 0.19 deleterious(0) probably_damaging(0.971) TCGA-60-2714-01 10 7205703 7205703 C A SFMBT2 3'UTR 0.05 TCGA-60-2714-01 10 72538240 72538240 G T TBATA Intron 0.35 TCGA-60-2714-01 10 79773434 79773434 T C POLR3A Missense_Mutation p.K516E 0.35 deleterious(0) benign(0.263) TCGA-60-2714-01 10 85957578 85957578 G T CDHR1 Missense_Mutation p.D112Y 0.26 deleterious(0) probably_damaging(0.992) TCGA-60-2714-01 10 86198312 86198312 A T CCSER2 Missense_Mutation p.Y638F 0.25 deleterious(0.04) benign(0.035) TCGA-60-2714-01 10 88197274 88197274 G A WAPAL 3'UTR 0.37 TCGA-60-2714-01 10 88441290 88441290 C A LDB3 Missense_Mutation p.P140H 0.25 tolerated(0.25) benign(0.004) TCGA-60-2714-01 10 89505838 89505838 T C PAPSS2 3'UTR 0.16 TCGA-60-2714-01 10 90484406 90484406 G T LIPK Splice_Site p.X35_splice 0.17 TCGA-60-2714-01 10 91478583 91478583 A G KIF20B Missense_Mutation p.Y463C 0.27 deleterious(0.03) probably_damaging(0.912) TCGA-60-2714-01 10 92617162 92617162 C A HTR7 Silent p.T89T 0.20 TCGA-60-2714-01 10 93722340 93722340 G C BTAF1 Missense_Mutation p.E437Q 0.08 tolerated(0.57) benign(0.003) TCGA-60-2714-01 10 95111226 95111226 C A MYOF Nonsense_Mutation p.G1256* 0.25 TCGA-60-2714-01 10 96702239 96702239 G T CYP2C9 Intron 0.25 TCGA-60-2714-01 10 98762514 98762514 G T SLIT1 Silent p.G1367G 0.26 TCGA-60-2714-01 10 98799784 98799784 C A SLIT1 Missense_Mutation p.R753L 0.29 tolerated(0.05) benign(0.004) TCGA-60-2714-01 10 99126537 99126537 C A RRP12 Missense_Mutation p.E1059D 0.27 tolerated(0.77) benign(0.001) TCGA-60-2714-01 10 99141506 99141506 G A RRP12 Missense_Mutation p.S429L 0.10 tolerated(0.32) benign(0.001) TCGA-60-2714-01 11 104970132 104970132 A T CARD17 Missense_Mutation p.N97K 0.06 tolerated(0.14) benign(0.006) TCGA-60-2714-01 11 105774672 105774672 G A GRIA4 Missense_Mutation p.G340S 0.49 tolerated(0.43) benign(0.018) TCGA-60-2714-01 11 111753227 111753227 G A C11orf1 Missense_Mutation p.E61K 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-60-2714-01 11 113935000 113935000 G T ZBTB16 Silent p.P326P 0.23 TCGA-60-2714-01 11 116692225 116692225 G A APOA4 Silent p.A183A 0.08 TCGA-60-2714-01 11 117117603 117117603 T - RNF214 Frame_Shift_Del p.L301Cfs*7 0.08 TCGA-60-2714-01 11 119206966 119206966 G A RNF26 Silent p.K378K 0.30 TCGA-60-2714-01 11 120007992 120007992 G A TRIM29 Nonsense_Mutation p.Q250* 0.32 TCGA-60-2714-01 11 121430290 121430290 G T SORL1 Silent p.G991G 0.26 TCGA-60-2714-01 11 123513200 123513200 G T SCN3B Silent p.P133P 0.28 TCGA-60-2714-01 11 123886824 123886824 G T OR10G4 Silent p.P181P 0.36 TCGA-60-2714-01 11 124310618 124310618 G T OR8B8 Missense_Mutation p.R122S 0.36 deleterious_low_confidence(0) possibly_damaging(0.895) TCGA-60-2714-01 11 124756461 124756461 C A ROBO4 Missense_Mutation p.G898V 0.64 deleterious(0) probably_damaging(0.953) TCGA-60-2714-01 11 124794902 124794902 G A HEPACAM Missense_Mutation p.S50L 0.08 tolerated(0.15) possibly_damaging(0.612) TCGA-60-2714-01 11 128709136 128709136 G A KCNJ1 Missense_Mutation p.H354Y 0.19 tolerated(0.15) probably_damaging(0.995) TCGA-60-2714-01 11 132016203 132016203 G T NTM Silent p.R65R 0.22 TCGA-60-2714-01 11 14907367 14907367 C A CYP2R1 Missense_Mutation p.D108Y 0.12 deleterious(0) probably_damaging(1) TCGA-60-2714-01 11 17793442 17793443 CC - KCNC1 Frame_Shift_Del p.P268Qfs*14 0.17 TCGA-60-2714-01 11 1954980 1954980 C A TNNT3 Missense_Mutation p.D67E 0.10 deleterious(0.01) probably_damaging(0.985) TCGA-60-2714-01 11 20949994 20949994 C A NELL1 Missense_Mutation p.H322Q 0.40 tolerated(0.08) probably_damaging(0.979) TCGA-60-2714-01 11 22284508 22284508 G A ANO5 Missense_Mutation p.C606Y 0.19 deleterious(0) probably_damaging(0.928) TCGA-60-2714-01 11 22360059 22360059 C T SLC17A6 5'UTR 0.20 TCGA-60-2714-01 11 22363220 22363220 G C SLC17A6 Missense_Mutation p.G78A 0.34 tolerated(0.1) benign(0.309) TCGA-60-2714-01 11 2356860 2356860 C T CD81-AS1 Intron 0.21 TCGA-60-2714-01 11 2593286 2593286 C T KCNQ1 Missense_Mutation p.R243C 0.11 deleterious(0) probably_damaging(0.997) TCGA-60-2714-01 11 2950603 2950603 G C PHLDA2 5'UTR 0.40 TCGA-60-2714-01 11 33566687 33566687 A T KIAA1549L Missense_Mutation p.T753S 0.31 tolerated(0.24) benign(0.019) TCGA-60-2714-01 11 36595210 36595210 G T RAG1 Missense_Mutation p.R119I 0.42 deleterious_low_confidence(0) benign(0.001) TCGA-60-2714-01 11 3681130 3681130 G T ART1 Silent p.L127L 0.37 TCGA-60-2714-01 11 43464895 43464895 A C TTC17 Missense_Mutation p.N758H 0.24 tolerated(0.1) probably_damaging(0.962) TCGA-60-2714-01 11 4471474 4471474 G T OR52K2 Missense_Mutation p.R302L 0.10 deleterious(0.01) possibly_damaging(0.523) TCGA-60-2714-01 11 45671875 45671875 C G CHST1 Missense_Mutation p.R200P 0.13 deleterious(0.01) possibly_damaging(0.786) TCGA-60-2714-01 11 4608915 4608915 G T OR52I2 Silent p.A291A 0.35 TCGA-60-2714-01 11 4790931 4790931 G T OR51F1 Missense_Mutation p.L73M 0.29 tolerated(0.07) benign(0.285) TCGA-60-2714-01 11 51412193 51412193 T C OR4A5 Missense_Mutation p.D68G 0.36 deleterious_low_confidence(0) possibly_damaging(0.666) TCGA-60-2714-01 11 5254288 5254288 C A HBD Missense_Mutation p.R117L 0.34 tolerated(0.31) benign(0.1) TCGA-60-2714-01 11 549977 549977 C T LRRC56 Silent p.I134I 0.12 TCGA-60-2714-01 11 55322702 55322702 G T OR4C15 Missense_Mutation p.C307F 0.23 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-60-2714-01 11 55339624 55339624 G C OR4C16 Silent p.V7V 0.31 TCGA-60-2714-01 11 55433330 55433330 G A OR4C6 Missense_Mutation p.G230R 0.29 deleterious_low_confidence(0) benign(0.211) TCGA-60-2714-01 11 55587412 55587412 T C OR5D18 Missense_Mutation p.F103L 0.11 deleterious(0.02) benign(0.027) TCGA-60-2714-01 11 55761975 55761975 G T OR5F1 Missense_Mutation p.L43I 0.33 tolerated(0.14) benign(0.001) TCGA-60-2714-01 11 5624723 5624723 A G TRIM6 Missense_Mutation p.T89A 0.48 tolerated(0.16) benign(0.01) TCGA-60-2714-01 11 57080866 57080866 C A TNKS1BP1 Silent p.V432V 0.27 TCGA-60-2714-01 11 57958893 57958893 G T OR9Q2 Missense_Mutation p.A311S 0.30 tolerated(1) benign(0) TCGA-60-2714-01 11 58491983 58491983 G T GLYAT Intron 0.33 TCGA-60-2714-01 11 5862901 5862901 G A OR52E6 Missense_Mutation p.S76F 0.50 deleterious(0.01) possibly_damaging(0.83) TCGA-60-2714-01 11 5906226 5906226 G A OR52E4 Missense_Mutation p.R235Q 0.40 tolerated(0.12) benign(0.133) TCGA-60-2714-01 11 59940502 59940502 C A MS4A6A Missense_Mutation p.G245V 0.14 deleterious(0) probably_damaging(1) TCGA-60-2714-01 11 59940503 59940503 C A MS4A6A Missense_Mutation p.G245W 0.14 deleterious(0) probably_damaging(1) TCGA-60-2714-01 11 60889318 60889318 G C CD5 Silent p.L347L 0.16 TCGA-60-2714-01 11 64453298 64453298 G T NRXN2 Missense_Mutation p.N324K 0.20 deleterious(0) possibly_damaging(0.904) TCGA-60-2714-01 11 64533485 64533485 C A SF1 Intron 0.59 TCGA-60-2714-01 11 64540931 64540931 G T SF1 Missense_Mutation p.D194E 0.27 tolerated(0.1) possibly_damaging(0.674) TCGA-60-2714-01 11 65319551 65319551 C T LTBP3 Missense_Mutation p.E475K 0.13 tolerated(0.21) benign(0.306) TCGA-60-2714-01 11 6652426 6652427 AG T DCHS1 Frame_Shift_Del p.L1263Ifs*17 0.29 TCGA-60-2714-01 11 71946765 71946765 C T INPPL1 Silent p.A902A 0.05 TCGA-60-2714-01 11 73022495 73022495 G A ARHGEF17 Missense_Mutation p.E938K 0.16 tolerated_low_confidence(0.05) benign(0.003) TCGA-60-2714-01 11 73074348 73074348 G A ARHGEF17 Silent p.G1698G 0.69 TCGA-60-2714-01 11 76234263 76234263 G T C11orf30 Missense_Mutation p.K583N 0.14 deleterious(0) probably_damaging(0.95) TCGA-60-2714-01 11 76371098 76371098 G A LRRC32 Silent p.F513F 0.18 TCGA-60-2714-01 11 92569862 92569862 G T FAT3 Missense_Mutation p.R3406L 0.24 probably_damaging(1) TCGA-60-2714-01 11 92616215 92616215 C - FAT3 Frame_Shift_Del p.A4199Pfs*65 0.36 TCGA-60-2714-01 11 92896004 92896004 C T SLC36A4 Missense_Mutation p.R302H 0.14 tolerated(0.36) benign(0.027) TCGA-60-2714-01 11 94730957 94730957 A G KDM4D Missense_Mutation p.S141G 0.13 deleterious(0.01) possibly_damaging(0.882) TCGA-60-2714-01 11 95504774 95504774 G C FAM76B Nonsense_Mutation p.S324* 0.12 TCGA-60-2714-01 12 100806577 100806577 G A SLC17A8 Missense_Mutation p.V406M 0.12 deleterious(0) probably_damaging(0.976) TCGA-60-2714-01 12 100813688 100813688 G T SLC17A8 Missense_Mutation p.Q507H 0.17 deleterious(0) probably_damaging(0.998) TCGA-60-2714-01 12 101759270 101759270 C A UTP20 Silent p.R1998R 0.10 TCGA-60-2714-01 12 106897871 106897871 A T POLR3B Missense_Mutation p.E1037D 0.22 deleterious(0) possibly_damaging(0.873) TCGA-60-2714-01 12 107109192 107109192 G T RFX4 Silent p.V345V 0.25 TCGA-60-2714-01 12 108043119 108043119 G T BTBD11 Intron 0.16 TCGA-60-2714-01 12 109530665 109530665 C A ALKBH2 5'UTR 0.15 TCGA-60-2714-01 12 110897650 110897650 C T GPN3 Missense_Mutation p.E98K 0.06 tolerated(0.1) benign(0.008) TCGA-60-2714-01 12 111785338 111785338 C A CUX2 Missense_Mutation p.R1224S 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-60-2714-01 12 11183946 11183946 C A TAS2R31 5'UTR 0.46 TCGA-60-2714-01 12 114374901 114374901 C A RBM19 Missense_Mutation p.G660V 0.36 deleterious(0) benign(0.245) TCGA-60-2714-01 12 114837330 114837330 G T TBX5 Missense_Mutation p.A117E 0.42 tolerated(0.08) probably_damaging(0.943) TCGA-60-2714-01 12 11546401 11546401 G T PRB2 Missense_Mutation p.P204Q 0.07 tolerated(0.68) unknown(0) TCGA-60-2714-01 12 116406860 116406860 T A MED13L Missense_Mutation p.N2037I 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-60-2714-01 12 120567242 120567242 C A GCN1L1 Missense_Mutation p.W2576C 0.09 probably_damaging(0.963) TCGA-60-2714-01 12 123892086 123892086 C G SETD8 Missense_Mutation p.H299D 0.38 deleterious(0) probably_damaging(1) TCGA-60-2714-01 12 126138529 126138529 C A TMEM132B Missense_Mutation p.P837H 0.09 tolerated(0.19) benign(0.413) TCGA-60-2714-01 12 132322758 132322758 G T MMP17 Missense_Mutation p.G60C 0.27 deleterious(0) probably_damaging(1) TCGA-60-2714-01 12 132496147 132496147 G A EP400 Missense_Mutation p.G1137S 0.11 unknown(0) TCGA-60-2714-01 12 132496148 132496148 G T EP400 Missense_Mutation p.G1137V 0.11 unknown(0) TCGA-60-2714-01 12 132633437 132633437 C A NOC4L Missense_Mutation p.L300I 0.45 tolerated(1) benign(0) TCGA-60-2714-01 12 15704604 15704604 A T PTPRO Missense_Mutation p.R853W 0.42 deleterious(0) probably_damaging(0.997) TCGA-60-2714-01 12 19413886 19413886 A G PLEKHA5 Missense_Mutation p.S181G 0.44 deleterious(0) probably_damaging(0.992) TCGA-60-2714-01 12 20522798 20522798 G C PDE3A Missense_Mutation p.V194L 0.45 tolerated(0.19) benign(0.005) TCGA-60-2714-01 12 22354681 22354681 G T ST8SIA1 Silent p.I292I 0.11 TCGA-60-2714-01 12 25267607 25267607 T C CASC1 Missense_Mutation p.I532V 0.14 tolerated(0.46) benign(0.06) TCGA-60-2714-01 12 2676848 2676848 G A CACNA1C Missense_Mutation p.V595I 0.23 tolerated(0.14) benign(0.145) TCGA-60-2714-01 12 27132842 27132842 C A TM7SF3 Missense_Mutation p.G355V 0.08 deleterious(0) probably_damaging(1) TCGA-60-2714-01 12 2719865 2719865 G T CACNA1C Missense_Mutation p.Q1259H 0.40 deleterious(0) probably_damaging(0.944) TCGA-60-2714-01 12 29624891 29624891 C A OVCH1 Missense_Mutation p.S567I 0.24 deleterious(0) possibly_damaging(0.878) TCGA-60-2714-01 12 29665048 29665048 A G TMTC1 Silent p.Y812Y 0.10 TCGA-60-2714-01 12 32996120 32996120 T A PKP2 Missense_Mutation p.Q502H 0.31 tolerated_low_confidence(0.23) benign(0.003) TCGA-60-2714-01 12 40153996 40153996 A C SLC2A13 Missense_Mutation p.C593W 0.28 deleterious(0.02) probably_damaging(0.962) TCGA-60-2714-01 12 40645031 40645031 A T LRRK2 Intron 0.35 TCGA-60-2714-01 12 41966903 41966903 C A PDZRN4 Missense_Mutation p.S774R 0.10 tolerated(0.4) possibly_damaging(0.467) TCGA-60-2714-01 12 44176109 44176109 G T IRAK4 Splice_Site p.X314_splice 0.08 TCGA-60-2714-01 12 4919364 4919364 G C KCNA6 Missense_Mutation p.E53Q 0.13 deleterious(0) probably_damaging(0.995) TCGA-60-2714-01 12 4919811 4919811 G C KCNA6 Missense_Mutation p.D202H 0.25 tolerated(0.12) benign(0.299) TCGA-60-2714-01 12 49237747 49237747 C G DDX23 Missense_Mutation p.R99P 0.11 tolerated_low_confidence(0.08) unknown(0) TCGA-60-2714-01 12 49667072 49667072 G C TUBA1C 3'UTR 0.41 TCGA-60-2714-01 12 49724357 49724357 G C TROAP Missense_Mutation p.V577L 0.42 tolerated_low_confidence(0.4) benign(0.077) TCGA-60-2714-01 12 50029744 50029744 A G PRPF40B Missense_Mutation p.N465S 0.09 deleterious(0) probably_damaging(0.983) TCGA-60-2714-01 12 5020531 5020531 G T KCNA1 5'UTR 0.32 TCGA-60-2714-01 12 50794734 50794734 G T LARP4 5'UTR 0.08 TCGA-60-2714-01 12 52818383 52818383 C A KRT75 Missense_Mutation p.S525I 0.12 tolerated(0.08) unknown(0) TCGA-60-2714-01 12 53227688 53227688 G A KRT79 Silent p.V119V 0.51 TCGA-60-2714-01 12 53880026 53880026 A T MAP3K12 Missense_Mutation p.V212E 0.21 deleterious(0) probably_damaging(0.992) TCGA-60-2714-01 12 54689057 54689057 G A NFE2 5'UTR 0.09 TCGA-60-2714-01 12 55420213 55420213 A G NEUROD4 Splice_Site 0.41 TCGA-60-2714-01 12 56995586 56995586 C T BAZ2A Missense_Mutation p.S1274N 0.13 deleterious(0) benign(0.176) TCGA-60-2714-01 12 66923660 66923660 C A GRIP1 Silent p.V151V 0.07 TCGA-60-2714-01 12 70956660 70956660 C - PTPRB Frame_Shift_Del p.E1378Sfs*17 0.11 TCGA-60-2714-01 12 78444590 78444590 G T NAV3 Nonsense_Mutation p.G727* 0.38 TCGA-60-2714-01 12 78522571 78522571 G C NAV3 Missense_Mutation p.G1456R 0.20 tolerated(0.07) probably_damaging(1) TCGA-60-2714-01 12 78522572 78522572 G T NAV3 Missense_Mutation p.G1456V 0.20 tolerated(0.16) probably_damaging(1) TCGA-60-2714-01 12 7981334 7981334 G T SLC2A14 Silent p.L237L 0.37 TCGA-60-2714-01 12 81110790 81110790 T G MYF5 5'UTR 0.29 TCGA-60-2714-01 12 81503399 81503399 T C ACSS3 Silent p.G124G 0.17 TCGA-60-2714-01 12 81613818 81613818 A T ACSS3 Nonsense_Mutation p.K493* 0.12 TCGA-60-2714-01 12 8212051 8212051 C A C3AR1 Missense_Mutation p.R244M 0.11 tolerated(0.21) benign(0.001) TCGA-60-2714-01 12 8325200 8325200 G T ZNF705A 5'UTR 0.38 TCGA-60-2714-01 12 83290089 83290089 C A TMTC2 Missense_Mutation p.Q383K 0.44 tolerated(0.9) benign(0.002) TCGA-60-2714-01 12 88373932 88373932 G A C12orf50 3'UTR 0.23 TCGA-60-2714-01 12 88588994 88588994 G A TMTC3 Silent p.V771V 0.14 TCGA-60-2714-01 12 89744538 89744538 G T DUSP6 Missense_Mutation p.S222Y 0.47 deleterious(0) probably_damaging(0.967) TCGA-60-2714-01 12 93171825 93171825 C T EEA1 Missense_Mutation p.R1262Q 0.09 deleterious(0.01) benign(0.076) TCGA-60-2714-01 12 94796960 94796960 T - CCDC41 Frame_Shift_Del p.R135Gfs*3 0.29 TCGA-60-2714-01 12 95228451 95228451 C A MIR492 3'Flank 0.56 TCGA-60-2714-01 12 96641349 96641349 C G ELK3 Missense_Mutation p.S280C 0.20 tolerated(0.05) benign(0.205) TCGA-60-2714-01 12 99061409 99061409 C T APAF1 Missense_Mutation p.A494V 0.40 deleterious(0) probably_damaging(0.998) TCGA-60-2714-01 13 101736066 101736066 G T NALCN Silent p.R1193R 0.28 TCGA-60-2714-01 13 103297009 103297009 C G TPP2 Missense_Mutation p.P760A 0.11 tolerated(0.68) benign(0.001) TCGA-60-2714-01 13 103518166 103518166 A T BIVM-ERCC5 Missense_Mutation p.R1128W 0.07 deleterious_low_confidence(0) possibly_damaging(0.54) TCGA-60-2714-01 13 109475496 109475496 G A MYO16 Missense_Mutation p.E301K 0.08 tolerated(0.05) benign(0.211) TCGA-60-2714-01 13 114535631 114535631 C T GAS6 Missense_Mutation p.R310H 0.07 deleterious(0.02) benign(0.012) TCGA-60-2714-01 13 20048082 20048082 C T TPTE2 Missense_Mutation p.D122N 0.41 deleterious(0) probably_damaging(0.994) TCGA-60-2714-01 13 20325530 20325530 T C PSPC1 Missense_Mutation p.D283G 0.12 tolerated(0.17) benign(0.017) TCGA-60-2714-01 13 28367854 28367854 G A GSX1 Silent p.E188E 0.40 TCGA-60-2714-01 13 38158216 38158216 C A POSTN Missense_Mutation p.G378V 0.47 deleterious(0.02) probably_damaging(0.973) TCGA-60-2714-01 13 38158217 38158217 C A POSTN Nonsense_Mutation p.G378* 0.48 TCGA-60-2714-01 13 52667323 52667323 C A NEK5 Missense_Mutation p.D359Y 0.36 deleterious(0.01) possibly_damaging(0.51) TCGA-60-2714-01 13 58298874 58298874 C A PCDH17 Missense_Mutation p.P976T 0.09 tolerated(0.06) possibly_damaging(0.776) TCGA-60-2714-01 13 64321280 64321280 G C AL445989.1 Missense_Mutation p.G116A 0.26 unknown(0) TCGA-60-2714-01 13 67801848 67801848 A C PCDH9 Missense_Mutation p.V242G 0.28 deleterious(0) probably_damaging(0.99) TCGA-60-2714-01 13 76407241 76407241 G C LMO7 Missense_Mutation p.D769H 0.10 deleterious(0) probably_damaging(0.948) TCGA-60-2714-01 13 77570146 77570146 G T CLN5 Missense_Mutation p.R199L 0.32 tolerated(0.12) benign(0.357) TCGA-60-2714-01 13 94197544 94197544 A T GPC6 Missense_Mutation p.E63D 0.20 tolerated(0.12) benign(0.012) TCGA-60-2714-01 13 95815466 95815466 T A ABCC4 Missense_Mutation p.N740Y 0.25 deleterious(0) benign(0.033) TCGA-60-2714-01 14 101492433 101492434 AG T MIR758 RNA 0.11 TCGA-60-2714-01 14 105406871 105406871 G A AHNAK2 Missense_Mutation p.P4973S 0.14 benign(0.088) TCGA-60-2714-01 14 105411461 105411461 C A AHNAK2 Missense_Mutation p.V3443F 0.13 benign(0.045) TCGA-60-2714-01 14 105420407 105420407 C T AHNAK2 Missense_Mutation p.G461R 0.14 possibly_damaging(0.587) TCGA-60-2714-01 14 105452779 105452779 G T C14orf79 Missense_Mutation p.R4L 0.29 tolerated(0.24) benign(0.013) TCGA-60-2714-01 14 20763677 20763677 C A TTC5 Silent p.V284V 0.36 TCGA-60-2714-01 14 21424308 21424308 G A RNASE2 Silent p.A126A 0.10 TCGA-60-2714-01 14 22217916 22217916 G T TRAV5 Missense_Mutation p.K89N 0.07 tolerated(0.16) benign(0.049) TCGA-60-2714-01 14 22458926 22458926 C A TRAV16 Silent p.P26P 0.16 TCGA-60-2714-01 14 22471679 22471679 G C TRAV18 Missense_Mutation p.E34D 0.10 deleterious(0) possibly_damaging(0.654) TCGA-60-2714-01 14 23000058 23000058 G A TRAJ13 Missense_Mutation p.G12R 0.13 unknown(0) TCGA-60-2714-01 14 23504061 23504061 C A PSMB5 Silent p.P10P 0.11 TCGA-60-2714-01 14 24545757 24545757 G A CPNE6 Missense_Mutation p.E386K 0.11 tolerated(0.13) possibly_damaging(0.707) TCGA-60-2714-01 14 28734484 28734484 A G BNIP3P1 RNA 0.67 TCGA-60-2714-01 14 31371789 31371789 A G STRN3 Missense_Mutation p.I697T 0.07 deleterious(0) possibly_damaging(0.746) TCGA-60-2714-01 14 31828123 31828123 C G HEATR5A Missense_Mutation p.D445H 0.05 deleterious(0) probably_damaging(0.991) TCGA-60-2714-01 14 32560100 32560100 G T ARHGAP5 Missense_Mutation p.W75C 0.12 deleterious(0) probably_damaging(1) TCGA-60-2714-01 14 50117145 50117145 G A POLE2 Silent p.I445I 0.10 TCGA-60-2714-01 14 51226950 51226950 T A NIN Missense_Mutation p.E675V 0.17 deleterious(0) probably_damaging(0.959) TCGA-60-2714-01 14 58862735 58862735 C T TOMM20L Silent p.F20F 0.16 TCGA-60-2714-01 14 61486296 61486296 G T SLC38A6 Missense_Mutation p.G134V 0.31 deleterious(0) probably_damaging(1) TCGA-60-2714-01 14 64153099 64153099 T C SGPP1 Silent p.L350L 0.28 TCGA-60-2714-01 14 64484359 64484359 T C SYNE2 Missense_Mutation p.L1645P 0.40 probably_damaging(0.999) TCGA-60-2714-01 14 69259784 69259784 C T ZFP36L1 5'UTR 0.20 TCGA-60-2714-01 14 79111740 79111740 C G NRXN3 5'UTR 0.43 TCGA-60-2714-01 14 79117645 79117645 C G NRXN3 Missense_Mutation p.N26K 0.11 deleterious(0) probably_damaging(0.992) TCGA-60-2714-01 14 79432412 79432412 G A NRXN3 Missense_Mutation p.E441K 0.39 deleterious(0.01) probably_damaging(0.984) TCGA-60-2714-01 14 88406310 88406310 T A GALC Missense_Mutation p.Y617F 0.12 tolerated(0.13) benign(0.006) TCGA-60-2714-01 14 88452876 88452876 C A GALC Missense_Mutation p.L133F 0.08 deleterious(0) probably_damaging(0.937) TCGA-60-2714-01 14 89817109 89817109 C G FOXN3 Missense_Mutation p.R196T 0.14 deleterious(0) probably_damaging(0.966) TCGA-60-2714-01 14 94149008 94149008 C A UNC79 Missense_Mutation p.L2125M 0.08 tolerated(0.1) possibly_damaging(0.581) TCGA-60-2714-01 14 95107215 95107215 C A SERPINA13P RNA 0.46 TCGA-60-2714-01 14 96136777 96136777 A T TCL6 Splice_Site 0.36 TCGA-60-2714-01 15 102201967 102201967 C A TARSL2 Nonsense_Mutation p.G674* 0.16 TCGA-60-2714-01 15 41962143 41962143 G T MGA Nonsense_Mutation p.E351* 0.36 TCGA-60-2714-01 15 42602637 42602637 G T GANC Missense_Mutation p.E293D 0.19 benign(0.013) TCGA-60-2714-01 15 42740713 42740713 T A ZNF106 Missense_Mutation p.S875C 0.32 tolerated(0.07) possibly_damaging(0.695) TCGA-60-2714-01 15 43499629 43499629 G A EPB42 Silent p.S392S 0.29 TCGA-60-2714-01 15 43499631 43499631 A G EPB42 Missense_Mutation p.S392P 0.29 tolerated(0.28) benign(0.003) TCGA-60-2714-01 15 43892256 43892256 A G STRC Missense_Mutation p.V1714A 0.22 tolerated(0.59) benign(0.002) TCGA-60-2714-01 15 43990313 43990313 A T CKMT1A Silent p.A326A 0.31 TCGA-60-2714-01 15 48056462 48056462 G C SEMA6D Missense_Mutation p.V353L 0.40 tolerated(0.13) benign(0.047) TCGA-60-2714-01 15 48500228 48500228 C A SLC12A1 Missense_Mutation p.N104K 0.12 deleterious(0.02) probably_damaging(0.994) TCGA-60-2714-01 15 52643522 52643522 C A MYO5A Missense_Mutation p.D1260Y 0.23 deleterious(0) possibly_damaging(0.691) TCGA-60-2714-01 15 57839706 57839706 G T CGNL1 3'UTR 0.09 TCGA-60-2714-01 15 60793177 60793177 T C RORA Silent p.A458A 0.26 TCGA-60-2714-01 15 65621154 65621154 G T IGDCC3 3'UTR 0.17 TCGA-60-2714-01 15 68583191 68583191 G T FEM1B Missense_Mutation p.D499Y 0.23 deleterious(0) probably_damaging(1) TCGA-60-2714-01 15 72700287 72700287 G T TMEM202 3'UTR 0.38 TCGA-60-2714-01 15 73564887 73564887 C G NEO1 Silent p.A983A 0.39 TCGA-60-2714-01 15 74836768 74836768 C A ARID3B Missense_Mutation p.A164D 0.12 tolerated(0.2) benign(0.208) TCGA-60-2714-01 15 75500068 75500068 G T C15orf39 Missense_Mutation p.G560V 0.34 deleterious(0.03) benign(0.001) TCGA-60-2714-01 15 76587931 76587931 C A ETFA Splice_Site p.X62_splice 0.24 TCGA-60-2714-01 15 77474167 77474167 C A PEAK1 Missense_Mutation p.E34D 0.22 deleterious(0.03) probably_damaging(0.975) TCGA-60-2714-01 15 78398038 78398038 C A CIB2 Intron 0.17 TCGA-60-2714-01 15 79760703 79760703 C A KIAA1024 Missense_Mutation p.P910T 0.17 deleterious(0) probably_damaging(1) TCGA-60-2714-01 15 81212516 81212516 C A KIAA1199 Missense_Mutation p.H627N 0.25 deleterious(0) probably_damaging(0.996) TCGA-60-2714-01 15 82444402 82444402 T A EFTUD1 Missense_Mutation p.E798V 0.15 deleterious(0.04) benign(0.043) TCGA-60-2714-01 15 83456068 83456068 G T FSD2 Missense_Mutation p.D25E 0.28 deleterious(0.04) probably_damaging(0.999) TCGA-60-2714-01 15 85400046 85400046 C T ALPK3 Nonsense_Mutation p.Q895* 0.30 TCGA-60-2714-01 15 89849348 89849348 C T FANCI Missense_Mutation p.P1154S 0.27 deleterious(0) possibly_damaging(0.778) TCGA-60-2714-01 15 90969417 90969417 C A IQGAP1 Nonsense_Mutation p.Y77* 0.12 TCGA-60-2714-01 15 91491430 91491430 G T UNC45A Missense_Mutation p.A552S 0.30 tolerated(0.22) possibly_damaging(0.831) TCGA-60-2714-01 15 99434674 99434674 A T IGF1R Missense_Mutation p.Y254F 0.18 tolerated(1) benign(0.135) TCGA-60-2714-01 16 11858908 11858908 C A ZC3H7A Splice_Site p.X607_splice 0.56 TCGA-60-2714-01 16 1536235 1536235 C T PTX4 Missense_Mutation p.R376K 0.36 tolerated(0.05) benign(0.251) TCGA-60-2714-01 16 1538441 1538441 C A PTX4 Missense_Mutation p.G10C 0.24 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-60-2714-01 16 1570656 1570656 C A IFT140 Missense_Mutation p.G1203C 0.38 deleterious(0) probably_damaging(0.999) TCGA-60-2714-01 16 19553986 19553986 C T CCP110 Silent p.N757N 0.11 TCGA-60-2714-01 16 20043114 20043114 G C GPR139 Missense_Mutation p.I335M 0.07 deleterious_low_confidence(0) possibly_damaging(0.523) TCGA-60-2714-01 16 2014465 2014465 C T RPS2 Silent p.K54K 0.16 TCGA-60-2714-01 16 20359905 20359905 C A UMOD Nonsense_Mutation p.E240* 0.68 TCGA-60-2714-01 16 20451205 20451205 G A ACSM5 Silent p.V540V 0.04 TCGA-60-2714-01 16 20489925 20489925 C - ACSM2A Frame_Shift_Del p.G405Afs*16 0.35 TCGA-60-2714-01 16 2161517 2161517 C A PKD1 Silent p.V1217V 0.38 TCGA-60-2714-01 16 2239107 2239107 G A CASKIN1 Missense_Mutation p.R180W 0.12 probably_damaging(0.978) TCGA-60-2714-01 16 23415155 23415155 C T COG7 Missense_Mutation p.E555K 0.08 deleterious(0.01) possibly_damaging(0.675) TCGA-60-2714-01 16 2353969 2353969 C A ABCA3 Splice_Site p.X489_splice 0.25 TCGA-60-2714-01 16 2353970 2353970 C A ABCA3 Missense_Mutation p.M489I 0.26 tolerated(0.05) benign(0.015) TCGA-60-2714-01 16 23999903 23999903 G T PRKCB Missense_Mutation p.A94S 0.21 tolerated(0.25) benign(0.025) TCGA-60-2714-01 16 24816385 24816385 G C TNRC6A Silent p.R1345R 0.09 TCGA-60-2714-01 16 30410159 30410159 C T ZNF48 Missense_Mutation p.P530S 0.45 tolerated(0.81) benign(0) TCGA-60-2714-01 16 31100097 31100097 C T PRSS53 Missense_Mutation p.A12T 0.31 deleterious_low_confidence(0.02) benign(0.033) TCGA-60-2714-01 16 33965546 33965546 T A RNA5-8SP2 RNA 0.42 TCGA-60-2714-01 16 3486973 3486973 A T ZNF597 Nonsense_Mutation p.C242* 0.64 TCGA-60-2714-01 16 3614099 3614099 A G NLRC3 Missense_Mutation p.V327A 0.69 deleterious(0) probably_damaging(0.946) TCGA-60-2714-01 16 427140 427140 C T TMEM8A Missense_Mutation p.V178I 0.08 tolerated(0.99) benign(0.002) TCGA-60-2714-01 16 4498811 4498811 C T DNAJA3 Silent p.Y401Y 0.04 TCGA-60-2714-01 16 48149469 48149469 C T ABCC12 Missense_Mutation p.A616T 0.17 deleterious(0.02) probably_damaging(0.964) TCGA-60-2714-01 16 49669760 49669760 G A ZNF423 Silent p.N1101N 0.14 TCGA-60-2714-01 16 49672377 49672377 C T ZNF423 Missense_Mutation p.R229H 0.31 deleterious(0) probably_damaging(0.997) TCGA-60-2714-01 16 52472904 52472904 T A TOX3 3'UTR 0.42 TCGA-60-2714-01 16 53504446 53504446 G T RBL2 Missense_Mutation p.L799F 0.49 tolerated(0.28) benign(0.321) TCGA-60-2714-01 16 55361523 55361523 G A IRX6 Missense_Mutation p.A147T 0.17 tolerated(0.92) benign(0.005) TCGA-60-2714-01 16 57771147 57771147 A T KATNB1 5'UTR 0.31 TCGA-60-2714-01 16 68387431 68387431 G A PRMT7 Missense_Mutation p.E538K 0.08 deleterious(0) possibly_damaging(0.852) TCGA-60-2714-01 16 81295952 81295952 G T BCMO1 Intron 0.56 TCGA-60-2714-01 16 81298363 81298363 T A BCMO1 Missense_Mutation p.V197E 0.12 tolerated(0.34) possibly_damaging(0.632) TCGA-60-2714-01 16 83991307 83991307 G A OSGIN1 Missense_Mutation p.A11T 0.33 tolerated_low_confidence(0.81) benign(0.002) TCGA-60-2714-01 16 84213004 84213004 C A TAF1C Missense_Mutation p.S718I 0.19 deleterious(0) possibly_damaging(0.853) TCGA-60-2714-01 16 87677877 87677877 C A JPH3 Silent p.G132G 0.08 TCGA-60-2714-01 16 9934599 9934599 G C GRIN2A Missense_Mutation p.S519C 0.54 deleterious(0) probably_damaging(0.999) TCGA-60-2714-01 17 10248541 10248541 G C MYH13 Missense_Mutation p.A521G 0.43 deleterious(0.02) probably_damaging(0.958) TCGA-60-2714-01 17 10357134 10357134 C T MYH4 Silent p.E920E 0.45 TCGA-60-2714-01 17 10399611 10399611 G A MYH1 Missense_Mutation p.R1638C 0.10 deleterious(0.02) possibly_damaging(0.883) TCGA-60-2714-01 17 10555759 10555759 C T MYH3 Missense_Mutation p.R109H 0.49 deleterious(0.02) probably_damaging(0.957) TCGA-60-2714-01 17 12656132 12656132 G T MYOCD Missense_Mutation p.E509D 0.32 tolerated(0.15) benign(0.129) TCGA-60-2714-01 17 1489299 1489299 C G SLC43A2 Silent p.L375L 0.33 TCGA-60-2714-01 17 1673199 1673199 C G SERPINF1 Missense_Mutation p.F46L 0.15 tolerated(0.55) benign(0.143) TCGA-60-2714-01 17 17425664 17425664 C A PEMT Nonsense_Mutation p.G84* 0.39 TCGA-60-2714-01 17 20355164 20355164 C T LGALS9B Silent p.G234G 0.42 TCGA-60-2714-01 17 28766089 28766089 G A CPD Missense_Mutation p.V742M 0.07 deleterious(0) probably_damaging(0.996) TCGA-60-2714-01 17 29162708 29162708 G A ATAD5 Missense_Mutation p.E537K 0.10 tolerated(0.46) benign(0.002) TCGA-60-2714-01 17 3195393 3195394 GG - OR3A1 Frame_Shift_Del p.T163Cfs*20 0.33 TCGA-60-2714-01 17 32965163 32965163 G T TMEM132E Missense_Mutation p.W956L 0.25 deleterious(0) probably_damaging(0.999) TCGA-60-2714-01 17 33504054 33504054 T C UNC45B Silent p.L684L 0.13 TCGA-60-2714-01 17 33586624 33586624 G A SLFN5 Silent p.V305V 0.22 TCGA-60-2714-01 17 34136492 34136492 C T TAF15 5'UTR 0.36 TCGA-60-2714-01 17 3560032 3560032 C T CTNS Silent p.F208F 0.14 TCGA-60-2714-01 17 35614652 35614652 C A ACACA Missense_Mutation p.W600L 0.32 deleterious(0.02) probably_damaging(0.99) TCGA-60-2714-01 17 36962560 36962560 C A CWC25 Nonsense_Mutation p.G331* 0.15 TCGA-60-2714-01 17 38643369 38643369 C A TNS4 Missense_Mutation p.A403S 0.12 tolerated(0.62) benign(0.118) TCGA-60-2714-01 17 39383055 39383055 C G KRTAP9-2 Missense_Mutation p.P50R 0.15 deleterious(0) unknown(0) TCGA-60-2714-01 17 39881018 39881018 C A HAP1 Missense_Mutation p.G599C 0.20 deleterious(0) benign(0.183) TCGA-60-2714-01 17 40857180 40857180 C A EZH1 Missense_Mutation p.D621Y 0.07 deleterious(0) probably_damaging(0.997) TCGA-60-2714-01 17 41052927 41052927 G T G6PC Missense_Mutation p.G12W 0.11 deleterious(0) probably_damaging(1) TCGA-60-2714-01 17 41052928 41052928 G T G6PC Missense_Mutation p.G12V 0.11 deleterious(0) probably_damaging(1) TCGA-60-2714-01 17 41244144 41244144 T A BRCA1 Missense_Mutation p.Q1135L 0.12 tolerated(0.06) benign(0.381) TCGA-60-2714-01 17 43922482 43922482 C A SPPL2C Nonsense_Mutation p.C70* 0.40 TCGA-60-2714-01 17 44108939 44108939 C T KANSL1 Missense_Mutation p.R1074Q 0.11 deleterious_low_confidence(0.02) possibly_damaging(0.899) TCGA-60-2714-01 17 46474139 46474139 C A SKAP1 Nonsense_Mutation p.E19* 0.34 TCGA-60-2714-01 17 47241507 47241507 A G B4GALNT2 Missense_Mutation p.K335R 0.37 tolerated(0.19) probably_damaging(0.938) TCGA-60-2714-01 17 48246666 48246666 C A SGCA Intron 0.30 TCGA-60-2714-01 17 53076992 53076992 G A STXBP4 Splice_Site p.X96_splice 0.33 TCGA-60-2714-01 17 53155555 53155555 G C STXBP4 Missense_Mutation p.E435D 0.10 deleterious(0) probably_damaging(0.96) TCGA-60-2714-01 17 53798022 53798022 C G TMEM100 3'UTR 0.15 TCGA-60-2714-01 17 55926743 55926743 G A MRPS23 Silent p.L25L 0.16 TCGA-60-2714-01 17 56285340 56285340 C T MKS1 Silent p.V396V 0.12 TCGA-60-2714-01 17 57094700 57094700 T C TRIM37 Silent p.G781G 0.38 TCGA-60-2714-01 17 58235719 58235719 G A CA4 Missense_Mutation p.R219H 0.21 deleterious(0) probably_damaging(0.999) TCGA-60-2714-01 17 60088495 60088495 C A MED13 Missense_Mutation p.K461N 0.41 deleterious(0) probably_damaging(0.997) TCGA-60-2714-01 17 61512547 61512547 G C CYB561 Missense_Mutation p.R155G 0.24 tolerated(0.35) benign(0.025) TCGA-60-2714-01 17 62271233 62271233 T A TEX2 Missense_Mutation p.K621I 0.13 tolerated(0.08) possibly_damaging(0.614) TCGA-60-2714-01 17 67081188 67081188 C T ABCA6 Missense_Mutation p.A1389T 0.11 tolerated(0.14) benign(0.229) TCGA-60-2714-01 17 67081239 67081239 T A ABCA6 Missense_Mutation p.R1372W 0.48 deleterious(0) probably_damaging(0.966) TCGA-60-2714-01 17 673679 673679 G C GLOD4 Missense_Mutation p.F204L 0.11 deleterious(0) probably_damaging(0.928) TCGA-60-2714-01 17 6939830 6939830 G T SLC16A13 Silent p.A43A 0.36 TCGA-60-2714-01 17 71027754 71027754 C A SLC39A11 Missense_Mutation p.V83F 0.08 deleterious(0.03) benign(0.11) TCGA-60-2714-01 17 71398250 71398250 C A SDK2 Nonsense_Mutation p.E839* 0.45 TCGA-60-2714-01 17 72584964 72584964 G T CD300LD Missense_Mutation p.T22N 0.11 tolerated(0.32) possibly_damaging(0.661) TCGA-60-2714-01 17 7324377 7324377 G T SPEM1 Missense_Mutation p.W128L 0.54 tolerated(0.07) probably_damaging(0.954) TCGA-60-2714-01 17 73922158 73922158 C A FBF1 Missense_Mutation p.G260V 0.18 deleterious(0) possibly_damaging(0.866) TCGA-60-2714-01 17 74303619 74303619 C A QRICH2 5'UTR 0.50 TCGA-60-2714-01 17 74303620 74303620 C A QRICH2 5'UTR 0.50 TCGA-60-2714-01 17 74570467 74570467 C A ST6GALNAC2 Missense_Mutation p.W114L 0.38 probably_damaging(0.973) TCGA-60-2714-01 17 7578538 7578538 T A TP53 Missense_Mutation p.N131I 0.57 deleterious(0) probably_damaging(0.999) TCGA-60-2714-01 17 76210374 76210374 G T BIRC5 5'UTR 0.36 TCGA-60-2714-01 17 76440856 76440856 G C DNAH17 Missense_Mutation p.F3772L 0.22 probably_damaging(0.928) TCGA-60-2714-01 17 76472764 76472764 G T DNAH17 Missense_Mutation p.R2668S 0.17 benign(0.383) TCGA-60-2714-01 17 76525625 76525625 G C DNAH17 Missense_Mutation p.L1146V 0.21 possibly_damaging(0.678) TCGA-60-2714-01 17 80137020 80137020 C A CCDC57 Silent p.L419L 0.11 TCGA-60-2714-01 17 8814778 8814778 G T PIK3R5 Missense_Mutation p.R12S 0.42 deleterious(0) probably_damaging(0.999) TCGA-60-2714-01 17 9820536 9820536 C A GAS7 3'UTR 0.08 TCGA-60-2714-01 18 14787090 14787090 G T ANKRD30B Missense_Mutation p.W575C 0.28 tolerated(0.06) probably_damaging(0.977) TCGA-60-2714-01 18 18586461 18586461 T C ROCK1 Missense_Mutation p.E579G 0.12 deleterious(0) probably_damaging(0.963) TCGA-60-2714-01 18 28991408 28991408 G A DSG4 Silent p.S803S 0.18 TCGA-60-2714-01 18 29122710 29122710 A C DSG2 Missense_Mutation p.E743D 0.21 tolerated(0.36) benign(0.023) TCGA-60-2714-01 18 30903561 30903562 - A CCDC178 Frame_Shift_Ins p.E306* 0.23 TCGA-60-2714-01 18 31319908 31319908 C A ASXL3 Missense_Mutation p.P847H 0.36 possibly_damaging(0.606) TCGA-60-2714-01 18 43249445 43249445 A T SLC14A2 Silent p.S737S 0.13 TCGA-60-2714-01 18 44561259 44561259 G C TCEB3B Missense_Mutation p.P126R 0.20 tolerated(0.08) probably_damaging(0.997) TCGA-60-2714-01 18 44561423 44561423 G T TCEB3B Silent p.A71A 0.07 TCGA-60-2714-01 18 50929248 50929248 A C DCC Missense_Mutation p.N974H 0.36 deleterious(0) probably_damaging(0.998) TCGA-60-2714-01 18 5415838 5415838 C G EPB41L3 Silent p.P682P 0.10 TCGA-60-2714-01 18 54354101 54354101 T C WDR7 Missense_Mutation p.F205L 0.39 tolerated(0.14) benign(0.048) TCGA-60-2714-01 18 7231739 7231739 C T LRRC30 Silent p.I201I 0.10 TCGA-60-2714-01 18 8379226 8379226 G T PTPRM Missense_Mutation p.R1225L 0.10 deleterious(0) probably_damaging(1) TCGA-60-2714-01 18 9886653 9886653 G T TXNDC2 Missense_Mutation p.Q59H 0.57 tolerated(0.67) benign(0.032) TCGA-60-2714-01 19 10070978 10070978 C A COL5A3 3'UTR 0.61 TCGA-60-2714-01 19 10394268 10394268 T C ICAM1 Missense_Mutation p.V148A 0.42 tolerated(0.2) possibly_damaging(0.464) TCGA-60-2714-01 19 11833952 11833952 C T ZNF823 Missense_Mutation p.E133K 0.23 tolerated(0.11) possibly_damaging(0.844) TCGA-60-2714-01 19 12429710 12429710 T G ZNF563 Missense_Mutation p.S377R 0.50 tolerated(0.36) benign(0.002) TCGA-60-2714-01 19 12825924 12825924 G A TNPO2 Silent p.A236A 0.44 TCGA-60-2714-01 19 1391143 1391143 G T NDUFS7 Missense_Mutation p.R145L 0.43 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-60-2714-01 19 14024308 14024308 C T CC2D1A Missense_Mutation p.A202V 0.15 tolerated(0.15) benign(0.002) TCGA-60-2714-01 19 16513291 16513291 C G EPS15L1 Missense_Mutation p.R544S 0.24 deleterious(0.03) possibly_damaging(0.623) TCGA-60-2714-01 19 17366316 17366316 G T USHBP1 Missense_Mutation p.H524N 0.29 tolerated(0.13) possibly_damaging(0.69) TCGA-60-2714-01 19 1881375 1881375 C T ABHD17A Missense_Mutation p.G64E 0.51 deleterious(0.02) benign(0.36) TCGA-60-2714-01 19 19627071 19627071 G T NDUFA13 Missense_Mutation p.Q8H 0.36 deleterious(0) probably_damaging(1) TCGA-60-2714-01 19 20235934 20235934 G A CTC-260E6.2 RNA 0.35 TCGA-60-2714-01 19 21720431 21720431 C A ZNF429 Missense_Mutation p.Q526K 0.52 tolerated(1) benign(0.007) TCGA-60-2714-01 19 22272036 22272036 C A ZNF257 Missense_Mutation p.A495D 0.41 tolerated(0.06) benign(0.169) TCGA-60-2714-01 19 22362934 22362934 C T ZNF676 Missense_Mutation p.G529R 0.47 tolerated(0.06) probably_damaging(1) TCGA-60-2714-01 19 22586275 22586275 G C ZNF98 Missense_Mutation p.L24V 0.44 tolerated(0.09) probably_damaging(0.987) TCGA-60-2714-01 19 35524646 35524646 G T SCN1B Nonsense_Mutation p.E151* 0.21 TCGA-60-2714-01 19 36017825 36017825 C A SBSN Missense_Mutation p.K453N 0.36 deleterious(0) possibly_damaging(0.895) TCGA-60-2714-01 19 3747955 3747955 C T TJP3 Missense_Mutation p.P838L 0.45 tolerated(0.1) benign(0.002) TCGA-60-2714-01 19 38942445 38942445 G T RYR1 Silent p.S388S 0.17 TCGA-60-2714-01 19 38976571 38976571 G T RYR1 Missense_Mutation p.R1759L 0.41 benign(0.157) TCGA-60-2714-01 19 39874243 39874243 G A SAMD4B 3'UTR 0.24 TCGA-60-2714-01 19 44570735 44570735 A G ZNF223 Missense_Mutation p.K252E 0.53 deleterious(0.04) probably_damaging(0.96) TCGA-60-2714-01 19 44832076 44832076 C A ZNF112 Missense_Mutation p.C751F 0.48 deleterious(0) probably_damaging(1) TCGA-60-2714-01 19 45579485 45579485 C T ZNF296 Silent p.G49G 0.32 TCGA-60-2714-01 19 48343073 48343073 C G CRX Missense_Mutation p.P250R 0.48 tolerated(0.08) probably_damaging(0.985) TCGA-60-2714-01 19 49100047 49100047 G T SULT2B1 Missense_Mutation p.G233C 0.32 deleterious(0.03) possibly_damaging(0.883) TCGA-60-2714-01 19 49548392 49548392 C A CGB5 Nonsense_Mutation p.C113* 0.14 TCGA-60-2714-01 19 50140165 50140165 T A RRAS Missense_Mutation p.Q87L 0.58 deleterious(0) possibly_damaging(0.789) TCGA-60-2714-01 19 50957608 50957608 G T MYBPC2 Missense_Mutation p.G666W 0.24 deleterious(0) probably_damaging(1) TCGA-60-2714-01 19 51628516 51628516 G T SIGLEC9 Silent p.G95G 0.29 TCGA-60-2714-01 19 51890566 51890566 C A LIM2 Silent p.R44R 0.53 TCGA-60-2714-01 19 52034472 52034472 C A SIGLEC6 Missense_Mutation p.L123F 0.43 deleterious(0.01) possibly_damaging(0.842) TCGA-60-2714-01 19 52941001 52941001 G C ZNF534 Missense_Mutation p.L109F 0.38 tolerated(0.7) benign(0.029) TCGA-60-2714-01 19 53793093 53793093 G C BIRC8 Missense_Mutation p.P179A 0.43 deleterious(0) benign(0.011) TCGA-60-2714-01 19 53994274 53994274 G T ZNF813 Missense_Mutation p.R263I 0.14 deleterious(0.02) benign(0.256) TCGA-60-2714-01 19 54407970 54407970 C T PRKCG Missense_Mutation p.R580W 0.11 deleterious(0) benign(0.168) TCGA-60-2714-01 19 54567057 54567057 C T VSTM1 5'UTR 0.43 TCGA-60-2714-01 19 54778441 54778441 G T LILRB2 3'UTR 0.59 TCGA-60-2714-01 19 54848888 54848888 G C LILRA4 Silent p.G245G 0.27 TCGA-60-2714-01 19 55045032 55045032 C A KIR3DX1 Missense_Mutation p.S51Y 0.48 tolerated(0.23) possibly_damaging(0.835) TCGA-60-2714-01 19 57088508 57088508 C T ZNF470 Silent p.F237F 0.09 TCGA-60-2714-01 19 57327914 57327914 A T PEG3 Nonsense_Mutation p.C632* 0.30 TCGA-60-2714-01 19 57988701 57988701 T A ZNF772 5'UTR 0.10 TCGA-60-2714-01 19 58101912 58101912 G T ZIK1 Missense_Mutation p.G245W 0.35 deleterious(0) probably_damaging(0.999) TCGA-60-2714-01 19 5867415 5867415 C A FUT5 Missense_Mutation p.A108S 0.42 tolerated(0.17) possibly_damaging(0.637) TCGA-60-2714-01 19 9033638 9033638 T A MUC16 Missense_Mutation p.N12100I 0.16 possibly_damaging(0.491) TCGA-60-2714-01 19 9045872 9045872 G T MUC16 Missense_Mutation p.T11920K 0.44 benign(0.007) TCGA-60-2714-01 19 9049853 9049853 G T MUC16 Missense_Mutation p.P10593Q 0.46 benign(0.016) TCGA-60-2714-01 19 9083083 9083083 C A MUC16 Missense_Mutation p.G2911V 0.60 unknown(0) TCGA-60-2714-01 19 9083084 9083084 C A MUC16 Nonsense_Mutation p.G2911* 0.59 TCGA-60-2714-01 19 9083568 9083568 A G MUC16 Silent p.S2749S 0.21 TCGA-60-2714-01 1 107867440 107867440 C A NTNG1 Missense_Mutation p.D261E 0.50 deleterious(0) probably_damaging(0.999) TCGA-60-2714-01 1 109810543 109810543 G T CELSR2 Missense_Mutation p.R2060L 0.45 tolerated(0.06) benign(0.059) TCGA-60-2714-01 1 12819260 12819260 C T C1orf158 Silent p.H81H 0.10 TCGA-60-2714-01 1 13695893 13695893 C A PRAMEF19 Missense_Mutation p.D358Y 0.24 probably_damaging(0.984) TCGA-60-2714-01 1 144886174 144886174 C G PDE4DIP Missense_Mutation p.K1020N 0.11 deleterious(0) probably_damaging(0.959) TCGA-60-2714-01 1 145109525 145109525 T A SEC22B Intron 0.12 TCGA-60-2714-01 1 148932841 148932841 T A RP11-14N7.2 RNA 0.10 TCGA-60-2714-01 1 149755655 149755655 G T FCGR1A Missense_Mutation p.G50V 0.34 deleterious(0.02) probably_damaging(0.923) TCGA-60-2714-01 1 152187037 152187037 C G HRNR Missense_Mutation p.Q2356H 0.04 unknown(0) TCGA-60-2714-01 1 152275305 152275305 C T FLG Silent p.A4019A 0.26 TCGA-60-2714-01 1 152277249 152277249 G T FLG Silent p.S3371S 0.33 TCGA-60-2714-01 1 152284499 152284499 G A FLG Missense_Mutation p.H955Y 0.09 benign(0.444) TCGA-60-2714-01 1 152636738 152636738 G T LCE2D Missense_Mutation p.G53W 0.13 deleterious_low_confidence(0.01) unknown(0) TCGA-60-2714-01 1 152777763 152777763 A C LCE1C Silent p.S64S 0.25 TCGA-60-2714-01 1 153391742 153391742 A G S100A7A Missense_Mutation p.K88R 0.32 tolerated(0.16) benign(0.005) TCGA-60-2714-01 1 153652174 153652174 T G NPR1 Missense_Mutation p.F197C 0.35 deleterious(0) probably_damaging(0.975) TCGA-60-2714-01 1 156621478 156621478 C A BCAN Missense_Mutation p.L432I 0.46 tolerated(0.27) possibly_damaging(0.585) TCGA-60-2714-01 1 156846307 156846307 G T NTRK1 Missense_Mutation p.R583L 0.08 deleterious(0.01) probably_damaging(0.913) TCGA-60-2714-01 1 156884598 156884598 G C PEAR1 3'UTR 0.18 TCGA-60-2714-01 1 157062659 157062659 C A ETV3L Missense_Mutation p.A290S 0.12 tolerated(0.06) benign(0.336) TCGA-60-2714-01 1 157062660 157062660 C A ETV3L Missense_Mutation p.L289F 0.14 deleterious(0) possibly_damaging(0.782) TCGA-60-2714-01 1 158606546 158606546 T C SPTA1 Missense_Mutation p.K1732R 0.13 deleterious(0.01) possibly_damaging(0.824) TCGA-60-2714-01 1 159558244 159558244 C A APCS Missense_Mutation p.Q140K 0.35 tolerated(1) benign(0.011) TCGA-60-2714-01 1 161017834 161017834 C T ARHGAP30 Missense_Mutation p.G993S 0.11 deleterious(0) possibly_damaging(0.821) TCGA-60-2714-01 1 161207893 161207893 C A NR1I3 5'UTR 0.38 TCGA-60-2714-01 1 161207901 161207901 C A NR1I3 5'UTR 0.39 TCGA-60-2714-01 1 161496053 161496053 G T HSPA6 Missense_Mutation p.R535S 0.24 deleterious_low_confidence(0.02) benign(0.43) TCGA-60-2714-01 1 16247423 16247423 C T SPEN Missense_Mutation p.A565V 0.21 probably_damaging(0.998) TCGA-60-2714-01 1 16255077 16255077 G A SPEN Missense_Mutation p.R781H 0.19 probably_damaging(0.996) TCGA-60-2714-01 1 171086417 171086417 G T FMO3 Missense_Mutation p.Q478H 0.12 deleterious(0.01) benign(0.018) TCGA-60-2714-01 1 173839860 173839860 G A ZBTB37 Missense_Mutation p.R166Q 0.13 tolerated(0.64) benign(0.115) TCGA-60-2714-01 1 175375559 175375559 G T TNR Missense_Mutation p.L98M 0.14 tolerated(0.25) benign(0.007) TCGA-60-2714-01 1 176740209 176740209 G A PAPPA2 Silent p.L1536L 0.15 TCGA-60-2714-01 1 177902396 177902396 C A SEC16B Missense_Mutation p.A926S 0.58 tolerated(0.15) benign(0.274) TCGA-60-2714-01 1 180907718 180907718 C A KIAA1614 Missense_Mutation p.A930E 0.30 deleterious(0) probably_damaging(0.988) TCGA-60-2714-01 1 181058012 181058012 G T IER5 5'UTR 0.15 TCGA-60-2714-01 1 181745246 181745246 C G CACNA1E Missense_Mutation p.L1717V 0.16 deleterious(0.05) possibly_damaging(0.694) TCGA-60-2714-01 1 183534901 183534901 G T NCF2 Missense_Mutation p.P313Q 0.07 tolerated(0.43) benign(0.025) TCGA-60-2714-01 1 185120982 185120982 T G TRMT1L Silent p.S107S 0.07 TCGA-60-2714-01 1 18554482 18554482 T C IGSF21 Missense_Mutation p.M54T 0.26 deleterious(0) probably_damaging(0.968) TCGA-60-2714-01 1 186277144 186277144 C A PRG4 Missense_Mutation p.P765T 0.38 unknown(0) TCGA-60-2714-01 1 190203499 190203499 T A BRINP3 Intron 0.37 TCGA-60-2714-01 1 19181275 19181275 C G TAS1R2 Missense_Mutation p.R230P 0.35 tolerated(0.2) benign(0.28) TCGA-60-2714-01 1 196398851 196398851 C G KCNT2 Missense_Mutation p.K225N 0.11 tolerated(0.53) benign(0.002) TCGA-60-2714-01 1 196642996 196642996 G T CFH Missense_Mutation p.C85F 0.25 deleterious(0) probably_damaging(1) TCGA-60-2714-01 1 196920157 196920157 T A CFHR2 Silent p.T143T 0.16 TCGA-60-2714-01 1 198725215 198725215 G A PTPRC Missense_Mutation p.E1276K 0.30 tolerated(0.9) benign(0.006) TCGA-60-2714-01 1 200561358 200561358 A G KIF14 Missense_Mutation p.V888A 0.17 deleterious(0) probably_damaging(0.996) TCGA-60-2714-01 1 200628160 200628160 C A DDX59 Missense_Mutation p.D353Y 0.12 deleterious(0) probably_damaging(0.996) TCGA-60-2714-01 1 200709038 200709038 C G CAMSAP2 Missense_Mutation p.S28C 0.09 deleterious(0.01) benign(0.416) TCGA-60-2714-01 1 200944650 200944650 G T KIF21B Missense_Mutation p.L1531I 0.33 deleterious(0.04) possibly_damaging(0.828) TCGA-60-2714-01 1 202915733 202915733 C A ADIPOR1 Missense_Mutation p.W88C 0.17 deleterious(0) probably_damaging(0.976) TCGA-60-2714-01 1 205688790 205688790 C A NUCKS1 Missense_Mutation p.D133Y 0.13 deleterious(0) probably_damaging(0.988) TCGA-60-2714-01 1 210857203 210857203 G T KCNH1 Missense_Mutation p.P797H 0.34 deleterious_low_confidence(0.04) benign(0.005) TCGA-60-2714-01 1 214171068 214171068 G T PROX1 Missense_Mutation p.G397V 0.16 tolerated(0.14) probably_damaging(0.981) TCGA-60-2714-01 1 214171069 214171069 G T PROX1 Silent p.G397G 0.15 TCGA-60-2714-01 1 215259767 215259767 C A KCNK2 Missense_Mutation p.L35I 0.35 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-60-2714-01 1 216256811 216256811 G T USH2A Missense_Mutation p.P1762H 0.08 possibly_damaging(0.897) TCGA-60-2714-01 1 216424245 216424245 C T USH2A Missense_Mutation p.G723R 0.10 probably_damaging(0.989) TCGA-60-2714-01 1 220091855 220091855 A T SLC30A10 Intron 0.14 TCGA-60-2714-01 1 220808844 220808844 C G MARK1 Missense_Mutation p.Q417E 0.11 deleterious(0.04) possibly_damaging(0.519) TCGA-60-2714-01 1 222742936 222742936 T A TAF1A Silent p.P270P 0.14 TCGA-60-2714-01 1 227618355 227618355 C A CTD-2090I13.1 RNA 0.15 TCGA-60-2714-01 1 228434258 228434258 T C OBSCN Silent p.L1355L 0.12 TCGA-60-2714-01 1 22925505 22925505 C A EPHA8 Missense_Mutation p.L785M 0.40 deleterious(0) probably_damaging(0.979) TCGA-60-2714-01 1 229601202 229601202 G C NUP133 Nonsense_Mutation p.S755* 0.18 TCGA-60-2714-01 1 231830303 231830303 A T DISC1 Missense_Mutation p.S267C 0.13 deleterious(0.04) benign(0.099) TCGA-60-2714-01 1 237540622 237540622 G T RYR2 Splice_Site p.X155_splice 0.16 TCGA-60-2714-01 1 237806639 237806639 G T RYR2 Missense_Mutation p.G2412W 0.32 probably_damaging(1) TCGA-60-2714-01 1 237881771 237881771 G A RYR2 Missense_Mutation p.E3502K 0.07 benign(0.154) TCGA-60-2714-01 1 237947642 237947642 C A RYR2 Missense_Mutation p.D4210E 0.15 benign(0.074) TCGA-60-2714-01 1 237961471 237961471 G T RYR2 Splice_Site p.X4697_splice 0.50 TCGA-60-2714-01 1 24134625 24134625 C A HMGCL Missense_Mutation p.Q250H 0.37 deleterious(0) probably_damaging(1) TCGA-60-2714-01 1 243419392 243419392 C G SDCCAG8 5'UTR 0.26 TCGA-60-2714-01 1 247875348 247875348 G T OR6F1 Missense_Mutation p.A237D 0.31 deleterious(0) probably_damaging(0.994) TCGA-60-2714-01 1 248201490 248201490 C T OR2L2 5'UTR 0.11 TCGA-60-2714-01 1 248512160 248512160 C A OR14C36 Silent p.S28S 0.29 TCGA-60-2714-01 1 248616107 248616107 G T OR2T2 Missense_Mutation p.M3I 0.18 tolerated(0.14) benign(0.002) TCGA-60-2714-01 1 27660541 27660541 G A TMEM222 Missense_Mutation p.R135H 0.12 tolerated(0.1) benign(0.26) TCGA-60-2714-01 1 2939221 2939221 C GG ACTRT2 Frame_Shift_Ins p.S324Wfs*30 0.35 TCGA-60-2714-01 1 34011681 34011682 - A CSMD2 Frame_Shift_Ins p.C2875Lfs*13 0.21 TCGA-60-2714-01 1 34015873 34015873 G A CSMD2 Missense_Mutation p.R2797W 0.25 tolerated(0.18) possibly_damaging(0.846) TCGA-60-2714-01 1 34254250 34254250 G T CSMD2 Missense_Mutation p.F498L 0.38 tolerated(0.89) benign(0.023) TCGA-60-2714-01 1 38227046 38227046 C G EPHA10 Intron 0.17 TCGA-60-2714-01 1 40229291 40229291 G T BMP8B Intron 0.12 TCGA-60-2714-01 1 40702273 40702273 C T RLF Silent p.P633P 0.47 TCGA-60-2714-01 1 41092312 41092312 G A RIMS3 Silent p.A268A 0.11 TCGA-60-2714-01 1 49052714 49052714 C G AGBL4 Missense_Mutation p.S410T 0.35 tolerated(0.4) benign(0.04) TCGA-60-2714-01 1 52943505 52943505 C A ZCCHC11 Missense_Mutation p.W633L 0.11 deleterious(0.03) benign(0.328) TCGA-60-2714-01 1 54233612 54233612 C A NDC1 3'UTR 0.37 TCGA-60-2714-01 1 55472946 55472946 G A BSND Splice_Site p.X183_splice 0.51 TCGA-60-2714-01 1 6196634 6196634 T C CHD5 Missense_Mutation p.Q880R 0.24 deleterious(0) probably_damaging(1) TCGA-60-2714-01 1 62330016 62330016 A T INADL Missense_Mutation p.E849V 0.25 deleterious(0) probably_damaging(0.999) TCGA-60-2714-01 1 72058617 72058617 T A NEGR1 Missense_Mutation p.N275Y 0.22 deleterious(0) probably_damaging(0.962) TCGA-60-2714-01 1 75065516 75065516 G - C1orf173 Frame_Shift_Del p.P530Lfs*9 0.24 TCGA-60-2714-01 1 76333197 76333197 A G MSH4 Splice_Site p.X411_splice 0.11 TCGA-60-2714-01 1 76384668 76384668 C T ASB17 Missense_Mutation p.R286H 0.21 deleterious(0.04) probably_damaging(0.954) TCGA-60-2714-01 1 77779510 77779510 G T AK5 Intron 0.42 TCGA-60-2714-01 1 77806194 77806194 T A AK5 Missense_Mutation p.F278I 0.21 deleterious(0) probably_damaging(1) TCGA-60-2714-01 1 7909704 7909704 C T UTS2 Missense_Mutation p.R100K 0.49 tolerated(0.7) benign(0.003) TCGA-60-2714-01 1 82437574 82437574 T C LPHN2 Missense_Mutation p.F981S 0.10 deleterious(0) probably_damaging(0.974) TCGA-60-2714-01 1 89732263 89732263 G T GBP5 Missense_Mutation p.Q212K 0.41 tolerated(0.49) benign(0.001) TCGA-60-2714-01 1 91405574 91405574 C T ZNF644 Missense_Mutation p.R446K 0.43 tolerated(0.25) possibly_damaging(0.807) TCGA-60-2714-01 1 92852736 92852736 G C RPAP2 3'UTR 0.45 TCGA-60-2714-01 1 97278621 97278622 CG TCT PTBP2 Frame_Shift_Ins p.A476Lfs*2 0.25 TCGA-60-2714-01 20 20269367 20269367 G T C20orf26 Missense_Mutation p.D971Y 0.27 deleterious(0) probably_damaging(1) TCGA-60-2714-01 20 20350334 20350334 C A INSM1 Missense_Mutation p.P475T 0.09 deleterious(0) possibly_damaging(0.876) TCGA-60-2714-01 20 23017190 23017190 C A SSTR4 Missense_Mutation p.A357E 0.32 tolerated(0.52) benign(0.014) TCGA-60-2714-01 20 23375621 23375621 C A NAPB Missense_Mutation p.A120S 0.22 deleterious(0.05) possibly_damaging(0.492) TCGA-60-2714-01 20 31583473 31583473 C A SUN5 Missense_Mutation p.M162I 0.29 tolerated(0.21) benign(0.002) TCGA-60-2714-01 20 35731133 35731133 C A MROH8 Missense_Mutation p.R1056I 0.13 tolerated(0.07) benign(0.161) TCGA-60-2714-01 20 40739066 40739066 C T PTPRT Missense_Mutation p.G1054D 0.24 deleterious(0) possibly_damaging(0.89) TCGA-60-2714-01 20 42789014 42789014 C T JPH2 Missense_Mutation p.R138H 0.37 deleterious(0) probably_damaging(0.998) TCGA-60-2714-01 20 43850577 43850577 G - SEMG2 Frame_Shift_Del p.G102Efs*24 0.25 TCGA-60-2714-01 20 44536483 44536483 C T PLTP Silent p.Q182Q 0.38 TCGA-60-2714-01 20 50310627 50310627 G A ATP9A Missense_Mutation p.R188W 0.38 deleterious(0) probably_damaging(1) TCGA-60-2714-01 20 56179661 56179661 G A ZBP1 Missense_Mutation p.H420Y 0.31 tolerated(0.11) benign(0) TCGA-60-2714-01 20 56188235 56188235 T A ZBP1 Silent p.T218T 0.23 TCGA-60-2714-01 20 57612280 57612280 G A SLMO2 Missense_Mutation p.P86L 0.29 deleterious(0.02) benign(0.047) TCGA-60-2714-01 20 61959304 61959304 G T COL20A1 Nonsense_Mutation p.G1177* 0.42 TCGA-60-2714-01 20 62493400 62493400 C A ABHD16B Missense_Mutation p.H169Q 0.25 tolerated(0.46) benign(0.006) TCGA-60-2714-01 20 62658958 62658958 G A PRPF6 Silent p.L736L 0.08 TCGA-60-2714-01 20 62729420 62729420 G T OPRL1 Missense_Mutation p.A167S 0.23 deleterious(0) probably_damaging(0.999) TCGA-60-2714-01 21 10996140 10996140 C A TPTE Splice_Site 0.10 TCGA-60-2714-01 21 10998337 10998337 T A TPTE Splice_Site 0.08 TCGA-60-2714-01 21 11039259 11039259 G T BAGE2 RNA 0.40 TCGA-60-2714-01 21 14982760 14982760 T C POTED Missense_Mutation p.C71R 0.41 tolerated_low_confidence(0.05) benign(0.03) TCGA-60-2714-01 21 14982761 14982761 G C POTED Missense_Mutation p.C71S 0.41 deleterious_low_confidence(0.05) benign(0.018) TCGA-60-2714-01 21 14982840 14982840 G A POTED Silent p.K97K 0.41 TCGA-60-2714-01 21 15516950 15516950 G T LIPI Missense_Mutation p.P451Q 0.21 deleterious(0) probably_damaging(1) TCGA-60-2714-01 21 28210776 28210776 C A ADAMTS1 Missense_Mutation p.G729V 0.43 deleterious(0) probably_damaging(0.995) TCGA-60-2714-01 21 30909692 30909692 G T GRIK1 Missense_Mutation p.N903K 0.32 deleterious_low_confidence(0.01) benign(0.097) TCGA-60-2714-01 21 31587932 31587932 G A CLDN8 Silent p.C104C 0.44 TCGA-60-2714-01 21 31588079 31588079 C G CLDN8 Silent p.V55V 0.12 TCGA-60-2714-01 21 31812680 31812680 C A KRTAP15-1 Missense_Mutation p.S12Y 0.11 deleterious(0) unknown(0) TCGA-60-2714-01 21 32127656 32127656 G T KRTAP21-1 Missense_Mutation p.S14Y 0.54 tolerated_low_confidence(1) unknown(0) TCGA-60-2714-01 21 32127665 32127665 C A KRTAP21-1 Missense_Mutation p.G11V 0.55 deleterious_low_confidence(0.03) unknown(0) TCGA-60-2714-01 21 34924286 34924286 G T SON Missense_Mutation p.A917S 0.07 benign(0.364) TCGA-60-2714-01 21 41173334 41173334 C A IGSF5 3'UTR 0.63 TCGA-60-2714-01 21 43161672 43161672 C A RIPK4 Missense_Mutation p.V561L 0.63 deleterious(0.01) possibly_damaging(0.658) TCGA-60-2714-01 21 43319398 43319398 T A C2CD2 Missense_Mutation p.E545V 0.09 deleterious(0.02) benign(0.319) TCGA-60-2714-01 21 44270219 44270219 C A WDR4 Silent p.P393P 0.59 TCGA-60-2714-01 21 45742043 45742043 G T PFKL Missense_Mutation p.A456S 0.16 tolerated(0.31) probably_damaging(0.976) TCGA-60-2714-01 21 47410932 47410932 G A COL6A1 Missense_Mutation p.A366T 0.11 tolerated(0.42) unknown(0) TCGA-60-2714-01 22 19363305 19363305 T C HIRA Missense_Mutation p.T542A 0.16 tolerated(0.42) benign(0.001) TCGA-60-2714-01 22 19864569 19864569 C A TXNRD2 3'UTR 0.36 TCGA-60-2714-01 22 22599669 22599669 C A VPREB1 Missense_Mutation p.R120S 0.14 tolerated(1) benign(0.122) TCGA-60-2714-01 22 26346404 26346404 G C MYO18B Missense_Mutation p.K1940N 0.21 tolerated(0.22) benign(0.012) TCGA-60-2714-01 22 27012189 27012189 G A CRYBB1 Missense_Mutation p.S32F 0.23 deleterious(0) benign(0.07) TCGA-60-2714-01 22 27026428 27026428 A T CRYBA4 Missense_Mutation p.S190C 0.13 deleterious(0) probably_damaging(1) TCGA-60-2714-01 22 29456668 29456668 G C C22orf31 Missense_Mutation p.P56R 0.19 deleterious(0.01) possibly_damaging(0.847) TCGA-60-2714-01 22 29696229 29696229 A T EWSR1 3'UTR 0.41 TCGA-60-2714-01 22 30766352 30766352 C A CCDC157 Missense_Mutation p.P153H 0.39 deleterious(0) probably_damaging(0.939) TCGA-60-2714-01 22 30984158 30984158 C A PES1 Silent p.R36R 0.15 TCGA-60-2714-01 22 37334248 37334248 C A CSF2RB Missense_Mutation p.P800T 0.38 deleterious(0.04) benign(0) TCGA-60-2714-01 22 38824177 38824177 C A KCNJ4 Splice_Site 0.20 TCGA-60-2714-01 22 40140232 40140232 C A ENTHD1 Missense_Mutation p.D426Y 0.44 deleterious(0) probably_damaging(0.959) TCGA-60-2714-01 22 41523579 41523579 C T EP300 Missense_Mutation p.P332L 0.43 unknown(0) TCGA-60-2714-01 22 46760556 46760556 C T CELSR1 Missense_Mutation p.G2878S 0.10 tolerated(0.53) benign(0.006) TCGA-60-2714-01 22 50599396 50599396 C A MOV10L1 Missense_Mutation p.P1156T 0.20 deleterious(0) possibly_damaging(0.689) TCGA-60-2714-01 22 50860794 50860794 G T PPP6R2 Silent p.L320L 0.26 TCGA-60-2714-01 2 100289053 100289053 T A AFF3 Splice_Site p.X389_splice 0.16 TCGA-60-2714-01 2 101667018 101667018 C - TBC1D8 Frame_Shift_Del p.Q225Rfs*11 0.43 TCGA-60-2714-01 2 103324957 103324957 G T SLC9A2 3'UTR 0.55 TCGA-60-2714-01 2 10712177 10712177 A G NOL10 3'UTR 0.17 TCGA-60-2714-01 2 110321959 110321959 C G SEPT10 Missense_Mutation p.E338Q 0.33 deleterious(0.03) benign(0.432) TCGA-60-2714-01 2 111395724 111395724 C A BUB1 Missense_Mutation p.L1025F 0.52 deleterious(0.03) probably_damaging(0.999) TCGA-60-2714-01 2 120128314 120128314 A C DBI Splice_Site p.X104_splice 0.10 TCGA-60-2714-01 2 130832284 130832284 G A POTEF Silent p.L921L 0.26 TCGA-60-2714-01 2 131521200 131521200 C A AMER3 Missense_Mutation p.R519S 0.73 tolerated(0.61) benign(0.194) TCGA-60-2714-01 2 141459786 141459786 C A LRP1B Nonsense_Mutation p.E2076* 0.15 TCGA-60-2714-01 2 145162408 145162408 T A ZEB2 Missense_Mutation p.E196V 0.10 deleterious(0) benign(0.249) TCGA-60-2714-01 2 149511571 149511571 G A EPC2 Missense_Mutation p.V179M 0.49 tolerated(0.09) possibly_damaging(0.839) TCGA-60-2714-01 2 150061897 150061897 A T LYPD6B Missense_Mutation p.N70Y 0.17 probably_damaging(0.923) TCGA-60-2714-01 2 157182347 157182347 C A NR4A2 Missense_Mutation p.G569V 0.49 deleterious(0) probably_damaging(1) TCGA-60-2714-01 2 157182348 157182348 C A NR4A2 Missense_Mutation p.G569W 0.47 deleterious(0) probably_damaging(1) TCGA-60-2714-01 2 160086819 160086819 G A TANC1 Missense_Mutation p.E1628K 0.09 deleterious_low_confidence(0.01) benign(0.41) TCGA-60-2714-01 2 160608981 160608981 C T MARCH7 Missense_Mutation p.S561L 0.14 deleterious(0) probably_damaging(0.99) TCGA-60-2714-01 2 162875280 162875280 G A DPP4 Missense_Mutation p.S460L 0.56 tolerated(0.62) benign(0.284) TCGA-60-2714-01 2 163044724 163044724 C T FAP Missense_Mutation p.R590Q 0.10 deleterious(0.01) possibly_damaging(0.732) TCGA-60-2714-01 2 163236441 163236441 C G KCNH7 Missense_Mutation p.G1018A 0.37 tolerated(0.53) benign(0.079) TCGA-60-2714-01 2 166032915 166032915 T A SCN3A 5'UTR 0.56 TCGA-60-2714-01 2 171716304 171716304 T A GAD1 Missense_Mutation p.F566Y 0.55 deleterious(0) probably_damaging(0.989) TCGA-60-2714-01 2 172334519 172334519 C T DCAF17 Missense_Mutation p.T402I 0.46 deleterious(0) probably_damaging(0.999) TCGA-60-2714-01 2 175439943 175439943 T C WIPF1 Missense_Mutation p.N116S 0.50 tolerated(0.61) benign(0.009) TCGA-60-2714-01 2 176964576 176964576 T C HOXD12 Missense_Mutation p.L16P 0.51 deleterious(0) probably_damaging(0.999) TCGA-60-2714-01 2 178494172 178494172 G T PDE11A Missense_Mutation p.P922H 0.31 deleterious_low_confidence(0.01) unknown(0) TCGA-60-2714-01 2 17913124 17913124 G A SMC6 Missense_Mutation p.T122I 0.21 deleterious(0.04) possibly_damaging(0.696) TCGA-60-2714-01 2 185802133 185802133 T A ZNF804A Missense_Mutation p.N670K 0.17 tolerated(0.11) probably_damaging(0.968) TCGA-60-2714-01 2 189868776 189868776 C A COL3A1 Missense_Mutation p.N910K 0.54 unknown(0) TCGA-60-2714-01 2 196729071 196729071 C A DNAH7 Missense_Mutation p.K2436N 0.51 deleterious(0.01) probably_damaging(0.968) TCGA-60-2714-01 2 207003250 207003250 T G NDUFS1 Missense_Mutation p.I465L 0.04 tolerated(0.32) benign(0.002) TCGA-60-2714-01 2 208633152 208633152 G A FZD5 Silent p.P104P 0.44 TCGA-60-2714-01 2 21225969 21225969 G T APOB Missense_Mutation p.Q4109K 0.56 benign(0.014) TCGA-60-2714-01 2 215593623 215593623 C A BARD1 Missense_Mutation p.S704I 0.52 tolerated(0.49) benign(0.005) TCGA-60-2714-01 2 219249986 219249986 T A SLC11A1 Silent p.P130P 0.13 TCGA-60-2714-01 2 220115927 220115927 G A TUBA4A Missense_Mutation p.S165F 0.70 deleterious_low_confidence(0.02) possibly_damaging(0.87) TCGA-60-2714-01 2 220432088 220432088 C A OBSL1 Missense_Mutation p.V582L 0.46 deleterious(0) possibly_damaging(0.53) TCGA-60-2714-01 2 225346796 225346796 C A CUL3 Splice_Site p.X615_splice 0.33 TCGA-60-2714-01 2 232326441 232326441 C T NCL Silent p.K141K 0.17 TCGA-60-2714-01 2 238280596 238280596 G T COL6A3 Missense_Mutation p.P1355Q 0.60 probably_damaging(0.954) TCGA-60-2714-01 2 238290062 238290062 G A COL6A3 Nonsense_Mutation p.R465* 0.15 TCGA-60-2714-01 2 241700731 241700731 T A KIF1A Missense_Mutation p.Q727L 0.62 deleterious(0.01) benign(0.237) TCGA-60-2714-01 2 242509637 242509637 C T BOK Silent p.L149L 0.13 TCGA-60-2714-01 2 27373082 27373082 C A TCF23 Missense_Mutation p.A105D 0.56 deleterious(0.01) probably_damaging(0.956) TCGA-60-2714-01 2 27801936 27801936 G A C2orf16 Missense_Mutation p.E833K 0.20 tolerated(0.13) possibly_damaging(0.855) TCGA-60-2714-01 2 33036224 33036224 T A TTC27 Missense_Mutation p.I711N 0.26 deleterious(0) possibly_damaging(0.886) TCGA-60-2714-01 2 33518265 33518265 G T LTBP1 Missense_Mutation p.G1051C 0.62 deleterious(0) probably_damaging(0.996) TCGA-60-2714-01 2 40656238 40656238 C A SLC8A1 Nonsense_Mutation p.E395* 0.56 TCGA-60-2714-01 2 49191098 49191098 G T FSHR Missense_Mutation p.L288I 0.50 tolerated(0.14) benign(0.007) TCGA-60-2714-01 2 50758389 50758389 G A NRXN1 Missense_Mutation p.R815C 0.10 deleterious(0) probably_damaging(0.995) TCGA-60-2714-01 2 50765612 50765612 A T NRXN1 Missense_Mutation p.V681E 0.39 deleterious(0) probably_damaging(0.999) TCGA-60-2714-01 2 50780085 50780085 C A NRXN1 Nonsense_Mutation p.G507* 0.53 TCGA-60-2714-01 2 61300686 61300686 G T KIAA1841 Missense_Mutation p.G144V 0.55 deleterious(0) probably_damaging(0.999) TCGA-60-2714-01 2 63280181 63280181 G T OTX1 Missense_Mutation p.G19V 0.56 deleterious(0.01) possibly_damaging(0.621) TCGA-60-2714-01 2 74143770 74143770 G T ACTG2 Missense_Mutation p.D289Y 0.55 deleterious_low_confidence(0.02) probably_damaging(0.982) TCGA-60-2714-01 2 80646621 80646621 C A CTNNA2 Silent p.T395T 0.57 TCGA-60-2714-01 2 80875072 80875072 G T CTNNA2 3'UTR 0.29 TCGA-60-2714-01 2 88082246 88082246 C G RGPD2 Missense_Mutation p.V1433L 0.48 tolerated(0.1) benign(0.198) TCGA-60-2714-01 2 88405954 88405954 C A SMYD1 Silent p.L364L 0.60 TCGA-60-2714-01 2 89185364 89185364 G T IGKV4-1 Missense_Mutation p.G20W 0.56 deleterious(0) probably_damaging(0.999) TCGA-60-2714-01 2 96594828 96594828 G A ANKRD36C 3'UTR 0.43 TCGA-60-2714-01 2 96993693 96993693 C A ITPRIPL1 Missense_Mutation p.P450T 0.55 deleterious(0.01) probably_damaging(0.999) TCGA-60-2714-01 2 97494744 97494744 G A CNNM3 Silent p.L644L 0.63 TCGA-60-2714-01 3 100059954 100059954 C T NIT2 Silent p.N95N 0.16 TCGA-60-2714-01 3 10419940 10419940 C A ATP2B2 Missense_Mutation p.K399N 0.51 deleterious(0.04) possibly_damaging(0.806) TCGA-60-2714-01 3 109046676 109046676 C A DPPA4 3'UTR 0.35 TCGA-60-2714-01 3 111999617 111999617 C T SLC9C1 Silent p.R34R 0.36 TCGA-60-2714-01 3 112648300 112648300 G T CD200R1 Missense_Mutation p.P86H 0.43 tolerated(0.15) benign(0.142) TCGA-60-2714-01 3 113176133 113176133 C - SPICE1 Frame_Shift_Del p.E503Kfs*17 0.21 TCGA-60-2714-01 3 119013805 119013805 G C ARHGAP31 Silent p.A18A 0.06 TCGA-60-2714-01 3 119452322 119452322 G T MAATS1 Missense_Mutation p.R438M 0.37 deleterious(0) probably_damaging(0.93) TCGA-60-2714-01 3 120053871 120053871 C A LRRC58 Missense_Mutation p.V249F 0.43 deleterious(0) probably_damaging(0.961) TCGA-60-2714-01 3 121341448 121341448 C A FBXO40 Missense_Mutation p.P391H 0.18 deleterious(0.01) possibly_damaging(0.828) TCGA-60-2714-01 3 121411334 121411334 C T GOLGB1 Missense_Mutation p.E2293K 0.45 possibly_damaging(0.543) TCGA-60-2714-01 3 121822444 121822444 G C CD86 Silent p.L50L 0.17 TCGA-60-2714-01 3 122632529 122632529 C A SEMA5B Splice_Site p.X765_splice 0.09 TCGA-60-2714-01 3 123022935 123022935 G T ADCY5 Missense_Mutation p.F846L 0.17 deleterious(0.02) benign(0.41) TCGA-60-2714-01 3 126202285 126202285 C A UROC1 Missense_Mutation p.G666V 0.10 deleterious(0) probably_damaging(0.999) TCGA-60-2714-01 3 126746904 126746904 G T PLXNA1 Missense_Mutation p.R1495L 0.08 deleterious(0) probably_damaging(0.996) TCGA-60-2714-01 3 126746905 126746905 G T PLXNA1 Silent p.R1495R 0.08 TCGA-60-2714-01 3 128204647 128204647 A T GATA2 Missense_Mutation p.F265Y 0.13 tolerated(0.09) probably_damaging(0.914) TCGA-60-2714-01 3 128525336 128525336 G T RAB7A Missense_Mutation p.S101I 0.11 deleterious(0.03) benign(0.191) TCGA-60-2714-01 3 130159348 130159348 G A COL6A5 Missense_Mutation p.A2056T 0.10 tolerated(0.14) benign(0.056) TCGA-60-2714-01 3 130422728 130422728 C A PIK3R4 Missense_Mutation p.W979C 0.41 deleterious(0) probably_damaging(0.999) TCGA-60-2714-01 3 132063800 132063800 G T ACPP Missense_Mutation p.W226C 0.12 deleterious(0) probably_damaging(1) TCGA-60-2714-01 3 13669371 13669371 C A FBLN2 Missense_Mutation p.P824Q 0.10 tolerated(0.61) possibly_damaging(0.548) TCGA-60-2714-01 3 138255987 138255987 C A CEP70 Intron 0.13 TCGA-60-2714-01 3 140406843 140406843 T C TRIM42 Missense_Mutation p.V440A 0.10 tolerated(0.21) possibly_damaging(0.831) TCGA-60-2714-01 3 1418729 1418729 A C CNTN6 Silent p.G712G 0.39 TCGA-60-2714-01 3 142423327 142423327 G T PLS1 Missense_Mutation p.D510Y 0.12 deleterious(0.01) probably_damaging(0.915) TCGA-60-2714-01 3 14565158 14565158 G A GRIP2 RNA 0.59 TCGA-60-2714-01 3 148802636 148802636 C A HLTF Missense_Mutation p.V21F 0.19 tolerated_low_confidence(0.18) benign(0.089) TCGA-60-2714-01 3 153220292 153220292 T A C3orf79 3'UTR 0.06 TCGA-60-2714-01 3 153840394 153840394 G - ARHGEF26 Frame_Shift_Del p.Q207Rfs*29 0.23 TCGA-60-2714-01 3 155200468 155200468 G C PLCH1 Nonsense_Mutation p.S1124* 0.20 TCGA-60-2714-01 3 158262047 158262047 G T RSRC1 Missense_Mutation p.G330C 0.15 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-60-2714-01 3 158531810 158531810 G A MFSD1 Silent p.L251L 0.18 TCGA-60-2714-01 3 161220131 161220131 G T OTOL1 Missense_Mutation p.G164V 0.13 deleterious(0) unknown(0) TCGA-60-2714-01 3 164735789 164735789 A G SI Silent p.H1163H 0.21 TCGA-60-2714-01 3 167402137 167402137 G C PDCD10 Missense_Mutation p.Q200E 0.08 deleterious(0.01) benign(0.131) TCGA-60-2714-01 3 167540780 167540780 A G SERPINI1 Missense_Mutation p.K329R 0.38 tolerated(0.25) benign(0.004) TCGA-60-2714-01 3 170102399 170102399 C G SKIL Silent p.L425L 0.08 TCGA-60-2714-01 3 170584173 170584173 T A RPL22L1 Missense_Mutation p.D122V 0.16 deleterious(0) unknown(0) TCGA-60-2714-01 3 170584264 170584264 C A RPL22L1 Missense_Mutation p.D92Y 0.35 deleterious(0) probably_damaging(0.991) TCGA-60-2714-01 3 171379852 171379852 C G PLD1 Missense_Mutation p.E780Q 0.04 deleterious(0) probably_damaging(1) TCGA-60-2714-01 3 184922271 184922271 C A EHHADH Missense_Mutation p.W281C 0.36 deleterious(0) probably_damaging(1) TCGA-60-2714-01 3 187416657 187416657 G A RTP2 Missense_Mutation p.R103W 0.18 deleterious(0.01) probably_damaging(0.932) TCGA-60-2714-01 3 196388221 196388221 G T NRROS Silent p.S569S 0.39 TCGA-60-2714-01 3 27759109 27759109 G C EOMES Missense_Mutation p.P505A 0.35 deleterious(0) possibly_damaging(0.804) TCGA-60-2714-01 3 3133853 3133853 A T IL5RA Intron 0.28 TCGA-60-2714-01 3 38616870 38616870 C A SCN5A Missense_Mutation p.R1195L 0.47 deleterious(0) possibly_damaging(0.605) TCGA-60-2714-01 3 38889045 38889045 G C SCN11A Missense_Mutation p.L1506V 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-60-2714-01 3 38945509 38945509 C A SCN11A Missense_Mutation p.W563C 0.10 deleterious(0) probably_damaging(0.999) TCGA-60-2714-01 3 40529580 40529580 G T ZNF619 Missense_Mutation p.V567L 0.09 tolerated_low_confidence(1) benign(0) TCGA-60-2714-01 3 42907158 42907158 A C ACKR2 3'UTR 0.08 TCGA-60-2714-01 3 42916810 42916810 C A CYP8B1 Missense_Mutation p.D167Y 0.27 deleterious(0) probably_damaging(1) TCGA-60-2714-01 3 440022 440022 C A CHL1 Silent p.G1069G 0.45 TCGA-60-2714-01 3 44409078 44409078 C T TCAIM Silent p.L150L 0.09 TCGA-60-2714-01 3 44893774 44893774 G A KIF15 Silent p.L1349L 0.10 TCGA-60-2714-01 3 48698746 48698746 G T CELSR3 Missense_Mutation p.T441N 0.09 tolerated(0.14) possibly_damaging(0.864) TCGA-60-2714-01 3 49331989 49331989 G C USP4 Silent p.V578V 0.08 TCGA-60-2714-01 3 52233246 52233246 T G ALAS1 5'UTR 0.12 TCGA-60-2714-01 3 5249843 5249843 A T EDEM1 Silent p.R468R 0.13 TCGA-60-2714-01 3 52825629 52825629 G A ITIH1 Missense_Mutation p.R864Q 0.40 tolerated(0.62) benign(0.037) TCGA-60-2714-01 3 62357254 62357254 A C FEZF2 Missense_Mutation p.F314C 0.11 deleterious(0) probably_damaging(0.963) TCGA-60-2714-01 3 64606843 64606843 C A ADAMTS9 Silent p.R920R 0.48 TCGA-60-2714-01 3 65415365 65415365 T A MAGI1 Missense_Mutation p.Q666L 0.09 deleterious(0) probably_damaging(0.977) TCGA-60-2714-01 3 71008385 71008385 C A FOXP1 3'UTR 0.21 TCGA-60-2714-01 3 73432808 73432808 C A PDZRN3 Missense_Mutation p.G970V 0.09 deleterious(0) probably_damaging(1) TCGA-60-2714-01 3 73432936 73432936 G A PDZRN3 Silent p.S927S 0.28 TCGA-60-2714-01 3 73439026 73439026 C G PDZRN3 Missense_Mutation p.D453H 0.40 deleterious(0) probably_damaging(0.987) TCGA-60-2714-01 3 7456815 7456815 G C GRM7 Missense_Mutation p.G380A 0.10 tolerated(0.67) benign(0.015) TCGA-60-2714-01 3 86996149 86996149 A C VGLL3 3'UTR 0.25 TCGA-60-2714-01 3 89499348 89499348 G T EPHA3 Missense_Mutation p.G840C 0.10 deleterious(0) probably_damaging(1) TCGA-60-2714-01 3 9166504 9166504 C A SRGAP3 Silent p.R55R 0.47 TCGA-60-2714-01 3 97124079 97124079 T A EPHA6 Missense_Mutation p.N564K 0.31 deleterious(0.03) benign(0.002) TCGA-60-2714-01 3 97467432 97467432 G A EPHA6 Missense_Mutation p.D1094N 0.12 deleterious(0) probably_damaging(0.999) TCGA-60-2714-01 3 97806477 97806477 G T OR5AC2 Missense_Mutation p.G154V 0.44 deleterious(0) probably_damaging(0.994) TCGA-60-2714-01 3 98002339 98002339 T A OR5H2 Missense_Mutation p.M203K 0.11 deleterious(0) possibly_damaging(0.673) TCGA-60-2714-01 3 98073342 98073342 G C OR5K4 Missense_Mutation p.L215F 0.12 deleterious(0.03) benign(0.25) TCGA-60-2714-01 3 98241752 98241752 C T CLDND1 5'UTR 0.16 TCGA-60-2714-01 4 101947147 101947147 C T PPP3CA Missense_Mutation p.E481K 0.12 deleterious(0) possibly_damaging(0.495) TCGA-60-2714-01 4 11400659 11400659 C A HS3ST1 3'UTR 0.08 TCGA-60-2714-01 4 126241794 126241794 G T FAT4 Missense_Mutation p.V1410L 0.24 probably_damaging(0.942) TCGA-60-2714-01 4 126371798 126371798 T A FAT4 Missense_Mutation p.S3209R 0.12 probably_damaging(0.999) TCGA-60-2714-01 4 13338112 13338112 G C HSP90AB2P RNA 0.24 TCGA-60-2714-01 4 140454388 140454388 A G SETD7 Silent p.D101D 0.08 TCGA-60-2714-01 4 144141523 144141523 G C USP38 Missense_Mutation p.D1015H 0.38 deleterious(0) probably_damaging(1) TCGA-60-2714-01 4 144801629 144801629 C T GYPE Missense_Mutation p.G24D 0.14 tolerated_low_confidence(0.63) probably_damaging(0.969) TCGA-60-2714-01 4 144826687 144826687 G A GYPE 5'UTR 0.06 TCGA-60-2714-01 4 158282688 158282688 A C GRIA2 Splice_Site p.X764_splice 0.05 TCGA-60-2714-01 4 159048588 159048588 C A FAM198B Missense_Mutation p.G519W 0.12 deleterious(0) probably_damaging(0.996) TCGA-60-2714-01 4 15964313 15964313 G T FGFBP2 Missense_Mutation p.T147K 0.08 tolerated(1) benign(0) TCGA-60-2714-01 4 164061536 164061536 C G NAF1 Splice_Site p.X240_splice 0.10 TCGA-60-2714-01 4 164271735 164271735 C T NPY5R Silent p.L104L 0.16 TCGA-60-2714-01 4 164393106 164393106 G A TKTL2 Missense_Mutation p.S594L 0.31 tolerated(0.23) benign(0.022) TCGA-60-2714-01 4 166414423 166414423 G T CPE Splice_Site p.X405_splice 0.08 TCGA-60-2714-01 4 175184044 175184044 C A FBXO8 Missense_Mutation p.G67V 0.13 deleterious(0.01) possibly_damaging(0.648) TCGA-60-2714-01 4 177041194 177041194 A T WDR17 Nonsense_Mutation p.K186* 0.14 TCGA-60-2714-01 4 186298101 186298101 G C LRP2BP Missense_Mutation p.L60V 0.09 tolerated(0.51) benign(0.004) TCGA-60-2714-01 4 187542102 187542102 C T FAT1 Missense_Mutation p.A1880T 0.31 benign(0.001) TCGA-60-2714-01 4 188924836 188924836 T A ZFP42 Missense_Mutation p.L292Q 0.24 deleterious(0.01) possibly_damaging(0.769) TCGA-60-2714-01 4 22389762 22389762 C T GPR125 Missense_Mutation p.G1178R 0.04 deleterious(0.01) possibly_damaging(0.794) TCGA-60-2714-01 4 23814653 23814653 C T PPARGC1A Missense_Mutation p.R630H 0.11 tolerated_low_confidence(0.08) unknown(0) TCGA-60-2714-01 4 2906602 2906602 G T ADD1 Missense_Mutation p.G425C 0.10 deleterious(0.02) probably_damaging(0.988) TCGA-60-2714-01 4 2906643 2906643 G T ADD1 Missense_Mutation p.Q438H 0.08 deleterious(0.03) probably_damaging(0.987) TCGA-60-2714-01 4 36163137 36163137 C - ARAP2 Frame_Shift_Del p.V737Lfs*4 0.10 TCGA-60-2714-01 4 38830327 38830327 G C TLR6 Silent p.L256L 0.20 TCGA-60-2714-01 4 44631474 44631474 C G YIPF7 Silent p.T148T 0.21 TCGA-60-2714-01 4 52861543 52861543 T A LRRC66 Missense_Mutation p.S549C 0.79 tolerated(0.15) benign(0.315) TCGA-60-2714-01 4 55161574 55161574 C T PDGFRA 3'UTR 0.21 TCGA-60-2714-01 4 55161576 55161576 G T PDGFRA 3'UTR 0.21 TCGA-60-2714-01 4 55604657 55604657 G T KIT Silent p.V955V 0.27 TCGA-60-2714-01 4 57777637 57777637 G T REST Missense_Mutation p.C278F 0.12 deleterious(0) probably_damaging(0.999) TCGA-60-2714-01 4 6087257 6087257 C G JAKMIP1 Missense_Mutation p.A242P 0.07 deleterious(0) probably_damaging(0.999) TCGA-60-2714-01 4 68934453 68934453 G C TMPRSS11F Missense_Mutation p.A213G 0.18 deleterious(0.02) possibly_damaging(0.771) TCGA-60-2714-01 4 6925347 6925347 G A TBC1D14 Silent p.E77E 0.46 TCGA-60-2714-01 4 69536102 69536102 T C UGT2B15 Missense_Mutation p.T79A 0.27 tolerated(0.16) benign(0.042) TCGA-60-2714-01 4 70806741 70806741 A T CSN1S1 Missense_Mutation p.Q102L 0.23 tolerated(0.1) possibly_damaging(0.607) TCGA-60-2714-01 4 71275139 71275139 G A PROL1 Missense_Mutation p.G32S 0.14 tolerated_low_confidence(0.47) probably_damaging(0.931) TCGA-60-2714-01 4 71346604 71346604 A T MUC7 Missense_Mutation p.Y48F 0.14 tolerated(0.13) benign(0.346) TCGA-60-2714-01 4 71509550 71509550 C A ENAM Missense_Mutation p.Q803K 0.26 deleterious(0.04) benign(0.049) TCGA-60-2714-01 4 73013373 73013373 C T NPFFR2 Silent p.S471S 0.13 TCGA-60-2714-01 4 74000856 74000856 G A ANKRD17 Missense_Mutation p.P1071L 0.13 possibly_damaging(0.729) TCGA-60-2714-01 4 76714932 76714932 C A USO1 Missense_Mutation p.L446I 0.12 deleterious(0.01) possibly_damaging(0.868) TCGA-60-2714-01 4 76804094 76804094 T G PPEF2 Missense_Mutation p.K306N 0.17 tolerated(0.13) probably_damaging(0.995) TCGA-60-2714-01 4 80328925 80328925 G T GK2 Missense_Mutation p.P144T 0.17 deleterious(0.01) probably_damaging(1) TCGA-60-2714-01 4 82096009 82096009 T C PRKG2 Missense_Mutation p.Y189C 0.29 deleterious(0.02) probably_damaging(0.975) TCGA-60-2714-01 4 8294078 8294078 C A HTRA3 Missense_Mutation p.L312M 0.40 deleterious(0) probably_damaging(0.989) TCGA-60-2714-01 4 84502732 84502732 G T AGPAT9 Nonsense_Mutation p.E76* 0.19 TCGA-60-2714-01 4 85699737 85699737 C A WDFY3 Missense_Mutation p.L1479F 0.29 deleterious(0) probably_damaging(0.997) TCGA-60-2714-01 4 94411886 94411886 T G GRID2 Missense_Mutation p.L652R 0.09 deleterious(0) probably_damaging(0.999) TCGA-60-2714-01 4 9784715 9784715 C T DRD5 Silent p.L354L 0.47 TCGA-60-2714-01 5 11364870 11364870 A T CTNND2 Missense_Mutation p.L437H 0.37 deleterious(0.02) possibly_damaging(0.702) TCGA-60-2714-01 5 118969735 118969735 C G FAM170A Missense_Mutation p.R98G 0.43 tolerated(0.26) benign(0.054) TCGA-60-2714-01 5 137505049 137505049 T A BRD8 Splice_Site p.X169_splice 0.33 TCGA-60-2714-01 5 140230031 140230031 G T PCDHA9 Missense_Mutation p.V651L 0.36 deleterious_low_confidence(0.03) probably_damaging(0.915) TCGA-60-2714-01 5 140237691 140237691 G A PCDHA10 Silent p.A686A 0.32 TCGA-60-2714-01 5 140475410 140475410 C A PCDHB2 Missense_Mutation p.P346T 0.35 tolerated_low_confidence(0.09) benign(0.072) TCGA-60-2714-01 5 140604613 140604613 C T PCDHB14 Silent p.H512H 0.43 TCGA-60-2714-01 5 140719392 140719392 C A PCDHGA2 Missense_Mutation p.P285H 0.41 deleterious_low_confidence(0.03) probably_damaging(0.954) TCGA-60-2714-01 5 140737082 140737082 A C PCDHGA4 Missense_Mutation p.Q772P 0.14 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-60-2714-01 5 140764662 140764662 G T PCDHGA7 Missense_Mutation p.L732F 0.36 tolerated_low_confidence(0.09) benign(0.062) TCGA-60-2714-01 5 140782790 140782790 G T PCDHGA9 Missense_Mutation p.D91Y 0.35 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-60-2714-01 5 153078626 153078626 T A GRIA1 Missense_Mutation p.V492D 0.38 deleterious(0) probably_damaging(1) TCGA-60-2714-01 5 15500704 15500704 G A FBXL7 5'UTR 0.12 TCGA-60-2714-01 5 15935288 15935288 G T FBXL7 Intron 0.16 TCGA-60-2714-01 5 159822068 159822068 C T C5orf54 Missense_Mutation p.D144N 0.11 tolerated(0.39) benign(0.292) TCGA-60-2714-01 5 16067858 16067858 G T MARCH11 Missense_Mutation p.R311S 0.17 deleterious(0) probably_damaging(0.999) TCGA-60-2714-01 5 168093622 168093622 G C SLIT3 Missense_Mutation p.A1470G 0.14 tolerated(0.15) benign(0.275) TCGA-60-2714-01 5 168112773 168112773 G T SLIT3 Silent p.I1158I 0.30 TCGA-60-2714-01 5 169494629 169494629 C A DOCK2 Missense_Mutation p.S1528Y 0.28 deleterious(0) probably_damaging(1) TCGA-60-2714-01 5 169535489 169535489 G T FOXI1 Missense_Mutation p.W337C 0.45 deleterious(0.03) probably_damaging(0.999) TCGA-60-2714-01 5 178139545 178139545 T A ZNF354A Missense_Mutation p.K445I 0.40 deleterious(0.01) probably_damaging(1) TCGA-60-2714-01 5 180038414 180038415 CT - FLT4 Frame_Shift_Del p.Q1201Rfs*12 0.09 TCGA-60-2714-01 5 19473581 19473581 G T CDH18 Missense_Mutation p.S709R 0.38 tolerated(0.07) benign(0.122) TCGA-60-2714-01 5 24488164 24488164 C A CDH10 Missense_Mutation p.D659Y 0.42 deleterious(0) probably_damaging(0.999) TCGA-60-2714-01 5 24492926 24492926 C G CDH10 Missense_Mutation p.D542H 0.21 deleterious(0.01) probably_damaging(0.963) TCGA-60-2714-01 5 26988308 26988308 C A CDH9 Missense_Mutation p.G45C 0.22 deleterious(0.01) benign(0.443) TCGA-60-2714-01 5 31302330 31302330 A G CDH6 Silent p.T308T 0.14 TCGA-60-2714-01 5 33467682 33467682 A G TARS Missense_Mutation p.K714E 0.10 tolerated(0.45) benign(0.117) TCGA-60-2714-01 5 33947241 33947241 C A SLC45A2 Intron 0.25 TCGA-60-2714-01 5 35954473 35954473 G T UGT3A1 Missense_Mutation p.A468E 0.49 deleterious(0) probably_damaging(0.984) TCGA-60-2714-01 5 36679892 36679892 C A SLC1A3 Silent p.R342R 0.26 TCGA-60-2714-01 5 39342223 39342223 C T C9 Nonsense_Mutation p.W51* 0.24 TCGA-60-2714-01 5 41009484 41009484 C A MROH2B Silent p.A1106A 0.39 TCGA-60-2714-01 5 41032852 41032852 C T MROH2B Silent p.R811R 0.29 TCGA-60-2714-01 5 41032853 41032853 C T MROH2B Missense_Mutation p.R811K 0.29 tolerated(0.14) benign(0.064) TCGA-60-2714-01 5 41199904 41199904 C A C6 Missense_Mutation p.E137D 0.40 tolerated(0.3) benign(0.032) TCGA-60-2714-01 5 54424431 54424431 C G CDC20B Missense_Mutation p.D238H 0.50 deleterious(0) probably_damaging(0.998) TCGA-60-2714-01 5 71757294 71757294 G A ZNF366 Silent p.D10D 0.29 TCGA-60-2714-01 5 7706867 7706867 G C ADCY2 Missense_Mutation p.D374H 0.42 deleterious(0) probably_damaging(0.924) TCGA-60-2714-01 5 83549946 83549946 G C EDIL3 Missense_Mutation p.P51R 0.43 deleterious(0) possibly_damaging(0.827) TCGA-60-2714-01 5 90015889 90015889 G C GPR98 Missense_Mutation p.D3158H 0.31 probably_damaging(0.99) TCGA-60-2714-01 5 9122771 9122771 G A SEMA5A Missense_Mutation p.S593F 0.49 deleterious(0) possibly_damaging(0.756) TCGA-60-2714-01 6 100061063 100061063 G T PRDM13 Silent p.A184A 0.62 TCGA-60-2714-01 6 102483230 102483230 C G GRIK2 Silent p.S700S 0.61 TCGA-60-2714-01 6 10983970 10983970 C A ELOVL2 3'UTR 0.57 TCGA-60-2714-01 6 10984002 10984002 T C ELOVL2 3'UTR 0.23 TCGA-60-2714-01 6 110426679 110426679 T A WASF1 Missense_Mutation p.E215V 0.13 deleterious(0.01) unknown(0) TCGA-60-2714-01 6 111587972 111587972 G TC KIAA1919 Frame_Shift_Ins p.V403Sfs*4 0.18 TCGA-60-2714-01 6 116972845 116972845 C A ZUFSP Missense_Mutation p.K402N 0.64 deleterious(0.03) probably_damaging(0.937) TCGA-60-2714-01 6 117116961 117116961 C A GPRC6A Missense_Mutation p.G529V 0.28 deleterious(0) probably_damaging(1) TCGA-60-2714-01 6 117127674 117127674 C G GPRC6A Missense_Mutation p.M398I 0.27 tolerated(0.37) benign(0.003) TCGA-60-2714-01 6 117589642 117589642 G T VGLL2 Missense_Mutation p.G127W 0.41 deleterious(0.01) possibly_damaging(0.784) TCGA-60-2714-01 6 127797259 127797259 G A SOGA3 Nonsense_Mutation p.Q638* 0.11 TCGA-60-2714-01 6 134350605 134350605 C G SLC2A12 Missense_Mutation p.G120R 0.65 deleterious(0) probably_damaging(0.999) TCGA-60-2714-01 6 136600993 136600993 G T BCLAF1 Silent p.S4S 0.10 TCGA-60-2714-01 6 146264745 146264745 G A SHPRH Missense_Mutation p.P591L 0.21 tolerated_low_confidence(0.16) benign(0.004) TCGA-60-2714-01 6 146350732 146350732 G C GRM1 Missense_Mutation p.V27L 0.50 tolerated_low_confidence(0.4) benign(0) TCGA-60-2714-01 6 149893461 149893461 G T GINM1 Missense_Mutation p.G54V 0.46 deleterious(0) probably_damaging(0.959) TCGA-60-2714-01 6 149893462 149893462 G T GINM1 Silent p.G54G 0.46 TCGA-60-2714-01 6 157222614 157222614 G C ARID1B Silent p.A627A 0.56 TCGA-60-2714-01 6 161653066 161653066 A T AGPAT4 Splice_Site p.X60_splice 0.26 TCGA-60-2714-01 6 166923836 166923836 C T RPS6KA2 Missense_Mutation p.R111Q 0.10 deleterious(0.02) possibly_damaging(0.517) TCGA-60-2714-01 6 167721264 167721265 - A UNC93A Intron 0.44 TCGA-60-2714-01 6 24786136 24786137 - T GMNN 3'UTR 0.24 TCGA-60-2714-01 6 26123708 26123708 A G HIST1H2BC Intron 0.08 TCGA-60-2714-01 6 26124824 26124824 G A HIST1H2AC Missense_Mutation p.E122K 0.14 tolerated_low_confidence(0.21) benign(0.001) TCGA-60-2714-01 6 26509257 26509257 C A BTN1A1 Missense_Mutation p.P479H 0.57 tolerated(0.08) possibly_damaging(0.907) TCGA-60-2714-01 6 28121499 28121499 C T ZKSCAN8 Nonsense_Mutation p.Q481* 0.07 TCGA-60-2714-01 6 28228105 28228105 C A NKAPL Missense_Mutation p.P319Q 0.54 deleterious(0) probably_damaging(1) TCGA-60-2714-01 6 29054262 29054262 G T OR2B3 Missense_Mutation p.A255D 0.57 deleterious(0.02) possibly_damaging(0.853) TCGA-60-2714-01 6 30558582 30558582 G C ABCF1 3'UTR 0.56 TCGA-60-2714-01 6 30671736 30671736 A G MDC1 Missense_Mutation p.C1742R 0.28 tolerated(0.17) benign(0.439) TCGA-60-2714-01 6 32006336 32006336 C A CYP21A2 Missense_Mutation p.P46H 0.50 tolerated(0.1) probably_damaging(0.994) TCGA-60-2714-01 6 32097512 32097512 G C FKBPL Missense_Mutation p.Q16E 0.15 tolerated_low_confidence(0.22) benign(0.001) TCGA-60-2714-01 6 33371296 33371296 T C KIFC1 Silent p.P113P 0.60 TCGA-60-2714-01 6 33371308 33371308 T A KIFC1 Silent p.S117S 0.59 TCGA-60-2714-01 6 34309722 34309722 G C NUDT3 Missense_Mutation p.P43A 0.11 deleterious(0) probably_damaging(0.983) TCGA-60-2714-01 6 40359599 40359599 G C LRFN2 3'UTR 0.67 TCGA-60-2714-01 6 43168436 43168436 G T CUL9 Nonsense_Mutation p.E1171* 0.59 TCGA-60-2714-01 6 43604302 43604302 A - MAD2L1BP Frame_Shift_Del p.K110Sfs*32 0.10 TCGA-60-2714-01 6 44222437 44222437 C G SLC35B2 3'UTR 0.61 TCGA-60-2714-01 6 47776023 47776023 C A OPN5 Missense_Mutation p.S297Y 0.58 deleterious(0) probably_damaging(0.998) TCGA-60-2714-01 6 53363383 53363383 T C GCLC 3'UTR 0.78 TCGA-60-2714-01 6 56417858 56417858 T G DST Silent p.T2621T 0.11 TCGA-60-2714-01 6 62887175 62887175 T C KHDRBS2 Missense_Mutation p.E45G 0.12 deleterious(0.03) benign(0) TCGA-60-2714-01 6 70034900 70034900 T C BAI3 Missense_Mutation p.L984S 0.58 deleterious(0.02) possibly_damaging(0.767) TCGA-60-2714-01 6 87725560 87725560 C A HTR1E Missense_Mutation p.P170T 0.57 tolerated(0.57) benign(0.158) TCGA-60-2714-01 6 88853559 88853559 C A CNR1 3'UTR 0.30 TCGA-60-2714-01 6 90082276 90082276 A T RRAGD Missense_Mutation p.Y311N 0.61 tolerated(0.13) benign(0.027) TCGA-60-2714-01 6 97063508 97063508 T C FHL5 Missense_Mutation p.C239R 0.59 deleterious(0) possibly_damaging(0.776) TCGA-60-2714-01 6 99347267 99347267 C T FBXL4 Silent p.E398E 0.57 TCGA-60-2714-01 7 100333384 100333384 C A ZAN Missense_Mutation p.S32Y 0.38 probably_damaging(0.983) TCGA-60-2714-01 7 100732542 100732542 G T TRIM56 Missense_Mutation p.G650V 0.37 tolerated(0.3) possibly_damaging(0.873) TCGA-60-2714-01 7 103205922 103205922 G T RELN Silent p.G1671G 0.33 TCGA-60-2714-01 7 104747962 104747962 G C KMT2E Missense_Mutation p.V1020L 0.06 deleterious_low_confidence(0.05) benign(0.04) TCGA-60-2714-01 7 107115455 107115455 T A GPR22 Nonsense_Mutation p.L317* 0.16 TCGA-60-2714-01 7 107692565 107692566 - T LAMB4 Frame_Shift_Ins p.S1298Kfs*4 0.08 TCGA-60-2714-01 7 107791199 107791199 C A NRCAM Intron 0.22 TCGA-60-2714-01 7 108142998 108142998 C A PNPLA8 Missense_Mutation p.G432V 0.11 deleterious(0) probably_damaging(0.988) TCGA-60-2714-01 7 110763775 110763775 C A LRRN3 Missense_Mutation p.A316D 0.49 deleterious(0.01) probably_damaging(1) TCGA-60-2714-01 7 113519199 113519199 G T PPP1R3A Missense_Mutation p.P650T 0.44 tolerated(1) benign(0) TCGA-60-2714-01 7 1166893 1166893 C T C7orf50 Silent p.K43K 0.48 TCGA-60-2714-01 7 121650794 121650794 T A PTPRZ1 Missense_Mutation p.I565K 0.26 deleterious_low_confidence(0.02) benign(0.051) TCGA-60-2714-01 7 121651353 121651353 G A PTPRZ1 Silent p.P751P 0.07 TCGA-60-2714-01 7 121652733 121652733 C A PTPRZ1 Silent p.T1211T 0.10 TCGA-60-2714-01 7 121652734 121652734 C T PTPRZ1 Missense_Mutation p.P1212S 0.10 tolerated_low_confidence(0.76) benign(0.015) TCGA-60-2714-01 7 123516942 123516942 C T HYAL4 Silent p.N393N 0.08 TCGA-60-2714-01 7 123599697 123599697 C A SPAM1 Missense_Mutation p.P402T 0.43 deleterious(0) probably_damaging(0.91) TCGA-60-2714-01 7 131825570 131825570 G A PLXNA4 Silent p.C1742C 0.45 TCGA-60-2714-01 7 131866918 131866918 G T PLXNA4 Missense_Mutation p.H1064N 0.16 tolerated(1) benign(0.004) TCGA-60-2714-01 7 132192765 132192765 G T PLXNA4 Missense_Mutation p.P230T 0.22 deleterious(0.03) probably_damaging(1) TCGA-60-2714-01 7 133502217 133502217 A C EXOC4 Missense_Mutation p.T552P 0.15 deleterious(0) possibly_damaging(0.779) TCGA-60-2714-01 7 135322766 135322766 A T NUP205 Nonsense_Mutation p.K1742* 0.21 TCGA-60-2714-01 7 135387598 135387598 T A SLC13A4 Missense_Mutation p.N209Y 0.21 deleterious(0.03) benign(0.195) TCGA-60-2714-01 7 136848974 136848974 C T hsa-mir-490 Intron 0.33 TCGA-60-2714-01 7 139796445 139796445 C T KDM7A Missense_Mutation p.E762K 0.07 tolerated(0.62) benign(0) TCGA-60-2714-01 7 140301747 140301747 G A DENND2A Missense_Mutation p.R151C 0.12 deleterious(0.02) possibly_damaging(0.696) TCGA-60-2714-01 7 141443704 141443704 G T SSBP1 Missense_Mutation p.D77Y 0.22 deleterious(0) probably_damaging(0.998) TCGA-60-2714-01 7 141773920 141773920 A T MGAM Intron 0.53 TCGA-60-2714-01 7 142247243 142247243 C A TRBV7-3 Silent p.T71T 0.44 TCGA-60-2714-01 7 142378619 142378619 G T MTRNR2L6 3'Flank 0.14 TCGA-60-2714-01 7 142428923 142428923 C A TRBV28 Missense_Mutation p.L95M 0.23 deleterious(0) probably_damaging(1) TCGA-60-2714-01 7 142481791 142481791 A G PRSS3P2 RNA 0.20 TCGA-60-2714-01 7 142573547 142573547 G A TRPV6 Silent p.S291S 0.17 TCGA-60-2714-01 7 142723547 142723547 G A OR9A2 Missense_Mutation p.P225S 0.18 deleterious(0.01) possibly_damaging(0.458) TCGA-60-2714-01 7 143826996 143826996 G C OR2A14 Missense_Mutation p.R264P 0.45 tolerated(0.1) benign(0.028) TCGA-60-2714-01 7 147674960 147674960 G T CNTNAP2 Missense_Mutation p.K754N 0.20 tolerated(1) benign(0.002) TCGA-60-2714-01 7 147869345 147869345 G T CNTNAP2 Missense_Mutation p.G929C 0.15 deleterious(0.03) probably_damaging(0.974) TCGA-60-2714-01 7 148506444 148506444 G C EZH2 Missense_Mutation p.R690G 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-60-2714-01 7 148506445 148506445 A T EZH2 Silent p.I689I 0.17 TCGA-60-2714-01 7 148963644 148963644 C T ZNF783 Silent p.C81C 0.11 TCGA-60-2714-01 7 149495189 149495189 C T SSPO RNA 0.18 TCGA-60-2714-01 7 149509505 149509505 C T SSPO RNA 0.26 TCGA-60-2714-01 7 149515800 149515800 C A SSPO RNA 0.35 TCGA-60-2714-01 7 149521638 149521638 G T SSPO RNA 0.39 TCGA-60-2714-01 7 150439699 150439699 G A GIMAP5 Missense_Mutation p.G158S 0.20 tolerated(0.08) benign(0.035) TCGA-60-2714-01 7 150831509 150831509 G A AGAP3 Missense_Mutation p.G450D 0.21 deleterious(0) probably_damaging(0.986) TCGA-60-2714-01 7 15240940 15240940 C T AGMO Missense_Mutation p.M436I 0.14 tolerated(0.4) benign(0) TCGA-60-2714-01 7 154876252 154876252 G T HTR5A 3'UTR 0.19 TCGA-60-2714-01 7 155503913 155503913 C T RBM33 Missense_Mutation p.P322L 0.21 tolerated(0.79) possibly_damaging(0.851) TCGA-60-2714-01 7 156520631 156520631 C A LMBR1 Missense_Mutation p.G329V 0.37 tolerated(0.09) probably_damaging(1) TCGA-60-2714-01 7 18869120 18869120 C A HDAC9 Silent p.A805A 0.19 TCGA-60-2714-01 7 20199186 20199186 C T MACC1 Silent p.S266S 0.11 TCGA-60-2714-01 7 21469366 21469366 C G SP4 Missense_Mutation p.Q195E 0.18 deleterious(0.01) possibly_damaging(0.585) TCGA-60-2714-01 7 21599384 21599384 G T DNAH11 Nonsense_Mutation p.E286* 0.21 TCGA-60-2714-01 7 21621630 21621630 T A DNAH11 Silent p.A567A 0.24 TCGA-60-2714-01 7 23385587 23385587 C A IGF2BP3 Missense_Mutation p.D305Y 0.14 deleterious(0) benign(0.405) TCGA-60-2714-01 7 28997147 28997147 G A AC005013.5 5'Flank 0.18 TCGA-60-2714-01 7 29035395 29035395 A T CPVL Missense_Mutation p.V475D 0.21 tolerated_low_confidence(0.74) benign(0) TCGA-60-2714-01 7 31146267 31146267 C A ADCYAP1R1 Missense_Mutation p.S487Y 0.22 deleterious(0) probably_damaging(0.998) TCGA-60-2714-01 7 34182892 34182892 G T BMPER Missense_Mutation p.C599F 0.11 deleterious(0) probably_damaging(1) TCGA-60-2714-01 7 34867196 34867196 T C NPSR1 Missense_Mutation p.I221T 0.23 deleterious(0) probably_damaging(0.997) TCGA-60-2714-01 7 38402774 38402774 G T TRGV2 Silent p.A15A 0.31 TCGA-60-2714-01 7 40220580 40220580 A T SUGCT Missense_Mutation p.K52N 0.07 deleterious(0) possibly_damaging(0.791) TCGA-60-2714-01 7 42974667 42974667 A T MRPL32 Nonsense_Mutation p.K82* 0.42 TCGA-60-2714-01 7 43484173 43484173 G T HECW1 Missense_Mutation p.A468S 0.11 tolerated_low_confidence(0.41) benign(0.001) TCGA-60-2714-01 7 44805883 44805883 C T ZMIZ2 Missense_Mutation p.P788L 0.43 deleterious(0.01) benign(0.362) TCGA-60-2714-01 7 50566866 50566866 G T DDC Missense_Mutation p.H286N 0.22 tolerated(0.08) benign(0.009) TCGA-60-2714-01 7 54612464 54612464 G T VSTM2A Nonsense_Mutation p.E77* 0.67 TCGA-60-2714-01 7 57528976 57528976 C A ZNF716 Missense_Mutation p.T270K 0.52 tolerated(1) benign(0.004) TCGA-60-2714-01 7 74211412 74211412 G A GTF2IRD2 Silent p.S813S 0.12 TCGA-60-2714-01 7 7559723 7559723 G C COL28A1 Missense_Mutation p.I261M 0.08 tolerated(0.23) possibly_damaging(0.903) TCGA-60-2714-01 7 77756600 77756600 C A MAGI2 Missense_Mutation p.D1113Y 0.20 deleterious(0) possibly_damaging(0.898) TCGA-60-2714-01 7 80108299 80108299 G T GNAT3 Missense_Mutation p.L107I 0.20 tolerated(0.31) benign(0.36) TCGA-60-2714-01 7 81331872 81331872 G T HGF 3'UTR 0.37 TCGA-60-2714-01 7 82545767 82545767 G A PCLO Silent p.T3845T 0.33 TCGA-60-2714-01 7 82583540 82583540 T G PCLO Silent p.I2243I 0.17 TCGA-60-2714-01 7 83823894 83823894 C A SEMA3A Missense_Mutation p.W3C 0.08 tolerated(0.15) benign(0) TCGA-60-2714-01 7 86479721 86479721 G T GRM3 Silent p.L809L 0.08 TCGA-60-2714-01 7 87144583 87144583 G T ABCB1 Silent p.L1082L 0.21 TCGA-60-2714-01 7 88423521 88423521 C G C7orf62 Missense_Mutation p.V246L 0.31 deleterious(0.01) possibly_damaging(0.496) TCGA-60-2714-01 7 92148347 92148347 C G PEX1 Missense_Mutation p.E107Q 0.07 tolerated(0.11) probably_damaging(0.961) TCGA-60-2714-01 7 92760389 92760389 G A SAMD9L 3'UTR 0.46 TCGA-60-2714-01 7 92760390 92760390 T A SAMD9L 3'UTR 0.46 TCGA-60-2714-01 7 94146949 94146949 A T CASD1 Missense_Mutation p.M71L 0.07 tolerated(0.49) benign(0.002) TCGA-60-2714-01 7 94293020 94293020 C A PEG10 Missense_Mutation p.T51N 0.20 tolerated_low_confidence(0.08) benign(0.029) TCGA-60-2714-01 7 98522836 98522836 G A TRRAP Missense_Mutation p.M975I 0.07 benign(0.003) TCGA-60-2714-01 7 98522837 98522837 A T TRRAP Missense_Mutation p.S976C 0.07 benign(0.005) TCGA-60-2714-01 7 99017041 99017041 G T BUD31 Missense_Mutation p.G138C 0.39 deleterious(0) probably_damaging(0.997) TCGA-60-2714-01 7 99564745 99564745 C T AZGP1 Missense_Mutation p.G260S 0.25 deleterious(0.05) probably_damaging(0.999) TCGA-60-2714-01 8 105463626 105463626 G A DPYS Missense_Mutation p.L91F 0.27 deleterious(0.01) probably_damaging(0.926) TCGA-60-2714-01 8 105503142 105503142 G T LRP12 Missense_Mutation p.S780Y 0.18 deleterious_low_confidence(0) possibly_damaging(0.794) TCGA-60-2714-01 8 106813687 106813687 A G ZFPM2 Silent p.T459T 0.06 TCGA-60-2714-01 8 10756360 10756360 C A XKR6 Missense_Mutation p.R343L 0.41 deleterious(0.01) probably_damaging(0.991) TCGA-60-2714-01 8 107773444 107773444 G T ABRA Missense_Mutation p.H323N 0.49 tolerated(0.14) benign(0.075) TCGA-60-2714-01 8 10782197 10782197 A G XKR6 Missense_Mutation p.L303P 0.27 deleterious(0.01) probably_damaging(0.982) TCGA-60-2714-01 8 109797119 109797119 G T TMEM74 Missense_Mutation p.S70Y 0.55 tolerated(0.43) benign(0.009) TCGA-60-2714-01 8 110418636 110418636 A T PKHD1L1 Missense_Mutation p.D581V 0.18 tolerated(0.05) benign(0.209) TCGA-60-2714-01 8 110445386 110445386 C G PKHD1L1 Missense_Mutation p.P1094R 0.24 deleterious(0.04) benign(0.34) TCGA-60-2714-01 8 110984565 110984565 C G KCNV1 Missense_Mutation p.E305Q 0.17 tolerated(1) probably_damaging(0.966) TCGA-60-2714-01 8 113301740 113301740 G T CSMD3 Missense_Mutation p.P3001H 0.14 deleterious(0) probably_damaging(0.992) TCGA-60-2714-01 8 113318370 113318370 G T CSMD3 Missense_Mutation p.T2646K 0.26 tolerated(0.94) possibly_damaging(0.542) TCGA-60-2714-01 8 113933981 113933981 C A CSMD3 Splice_Site p.X503_splice 0.20 TCGA-60-2714-01 8 119945204 119945204 C G TNFRSF11B Missense_Mutation p.R122S 0.14 tolerated(0.7) benign(0.005) TCGA-60-2714-01 8 121275214 121275214 G T COL14A1 Nonsense_Mutation p.E993* 0.51 TCGA-60-2714-01 8 125076639 125076639 C T FER1L6 Missense_Mutation p.S1127F 0.54 tolerated(0.15) benign(0.149) TCGA-60-2714-01 8 132996533 132996533 G T EFR3A Missense_Mutation p.A575S 0.17 tolerated(0.19) benign(0.049) TCGA-60-2714-01 8 134024144 134024144 A G TG Splice_Site p.X2088_splice 0.04 TCGA-60-2714-01 8 134050880 134050880 G T SLA Silent p.T280T 0.54 TCGA-60-2714-01 8 136533593 136533593 C A KHDRBS3 Missense_Mutation p.P68T 0.07 deleterious(0) probably_damaging(0.999) TCGA-60-2714-01 8 139155328 139155328 T C FAM135B Missense_Mutation p.T1189A 0.11 tolerated(0.11) benign(0.159) TCGA-60-2714-01 8 143561081 143561081 A T BAI1 Missense_Mutation p.N585I 0.17 tolerated(0.22) possibly_damaging(0.904) TCGA-60-2714-01 8 143846073 143846073 G T LYNX1 Missense_Mutation p.P116T 0.44 deleterious(0) probably_damaging(0.947) TCGA-60-2714-01 8 143846471 143846471 C T LYNX1 Missense_Mutation p.C81Y 0.13 tolerated(0.06) probably_damaging(0.997) TCGA-60-2714-01 8 144657311 144657311 C A NAPRT1 Intron 0.23 TCGA-60-2714-01 8 144993068 144993068 C A PLEC Missense_Mutation p.D3778Y 0.26 probably_damaging(0.971) TCGA-60-2714-01 8 145770853 145770853 G A ARHGAP39 Silent p.A767A 0.20 TCGA-60-2714-01 8 24810425 24810425 T A CTD-2168K21.2 5'Flank 0.34 TCGA-60-2714-01 8 28574069 28574069 G C EXTL3 Missense_Mutation p.D165H 0.34 tolerated(0.13) benign(0.01) TCGA-60-2714-01 8 3141714 3141714 C G CSMD1 Missense_Mutation p.D1369H 0.20 benign(0.155) TCGA-60-2714-01 8 42958721 42958721 A T POMK Missense_Mutation p.R10S 0.28 deleterious_low_confidence(0.02) benign(0.016) TCGA-60-2714-01 8 48586404 48586404 A G SPIDR Missense_Mutation p.E529G 0.23 deleterious(0) probably_damaging(0.993) TCGA-60-2714-01 8 52322095 52322095 G T PXDNL Missense_Mutation p.P697T 0.27 deleterious(0.01) benign(0.266) TCGA-60-2714-01 8 52322096 52322096 G T PXDNL Silent p.S696S 0.25 TCGA-60-2714-01 8 53030975 53030975 G T ST18 Missense_Mutation p.H928N 0.12 tolerated(0.09) benign(0.228) TCGA-60-2714-01 8 53084733 53084733 G T ST18 Missense_Mutation p.L230I 0.13 tolerated(0.56) benign(0.002) TCGA-60-2714-01 8 53580622 53580622 T A RB1CC1 Missense_Mutation p.S378C 0.39 deleterious(0) possibly_damaging(0.614) TCGA-60-2714-01 8 55538137 55538137 T G RP1 Silent p.G565G 0.09 TCGA-60-2714-01 8 62212669 62212669 G A CLVS1 Missense_Mutation p.A95T 0.10 tolerated(0.16) probably_damaging(0.964) TCGA-60-2714-01 8 63948230 63948230 C G GGH Missense_Mutation p.R70T 0.12 deleterious(0) probably_damaging(1) TCGA-60-2714-01 8 63948245 63948245 T C GGH Missense_Mutation p.E65G 0.09 deleterious(0) probably_damaging(1) TCGA-60-2714-01 8 66988938 66988938 C A DNAJC5B Missense_Mutation p.P55T 0.34 deleterious(0.01) probably_damaging(0.928) TCGA-60-2714-01 8 70585374 70585374 G T SLCO5A1 Silent p.S759S 0.07 TCGA-60-2714-01 8 70585442 70585442 C G SLCO5A1 Missense_Mutation p.V737L 0.07 tolerated(0.17) benign(0.074) TCGA-60-2714-01 8 70980536 70980536 C G PRDM14 Missense_Mutation p.G281R 0.19 deleterious(0) probably_damaging(1) TCGA-60-2714-01 8 73848781 73848781 G T KCNB2 Silent p.V397V 0.42 TCGA-60-2714-01 8 75276278 75276278 C T GDAP1 Silent p.L251L 0.09 TCGA-60-2714-01 8 80954855 80954855 C T TPD52 Silent p.K185K 0.14 TCGA-60-2714-01 8 82665461 82665461 C T CHMP4C Missense_Mutation p.S118F 0.19 deleterious(0.02) benign(0.035) TCGA-60-2714-01 8 87439949 87439949 C T WWP1 Missense_Mutation p.P412L 0.21 deleterious(0) probably_damaging(1) TCGA-60-2714-01 8 87439951 87439951 A T WWP1 Missense_Mutation p.T413S 0.21 tolerated(0.08) probably_damaging(0.997) TCGA-60-2714-01 8 87680260 87680260 T A CNGB3 Silent p.I210I 0.20 TCGA-60-2714-01 8 87683298 87683298 C G CNGB3 Missense_Mutation p.V123L 0.31 tolerated(0.21) benign(0.022) TCGA-60-2714-01 8 92972508 92972508 G T RUNX1T1 Missense_Mutation p.P604T 0.15 deleterious_low_confidence(0) unknown(0) TCGA-60-2714-01 8 94935140 94935140 C T PDP1 Missense_Mutation p.H310Y 0.13 tolerated(0.08) benign(0.058) TCGA-60-2714-01 8 95539342 95539342 C A KIAA1429 Missense_Mutation p.G377V 0.14 tolerated(0.25) possibly_damaging(0.614) TCGA-60-2714-01 8 95683741 95683741 G T ESRP1 Missense_Mutation p.V432L 0.07 tolerated(0.78) benign(0.008) TCGA-60-2714-01 8 95686626 95686626 G C ESRP1 Missense_Mutation p.D515H 0.60 deleterious(0.02) probably_damaging(0.951) TCGA-60-2714-01 8 97156998 97156998 G T GDF6 Nonsense_Mutation p.C387* 0.13 TCGA-60-2714-01 8 97172695 97172695 G T GDF6 Silent p.R76R 0.08 TCGA-60-2714-01 8 97251750 97251750 T A MTERFD1 Missense_Mutation p.Q408L 0.04 deleterious(0.01) benign(0.028) TCGA-60-2714-01 8 99560204 99560204 A T STK3 Silent p.T406T 0.13 TCGA-60-2714-01 9 104125125 104125125 G C BAAT Missense_Mutation p.S281C 0.15 tolerated(0.15) benign(0.049) TCGA-60-2714-01 9 104193112 104193112 C A ALDOB Missense_Mutation p.A20S 0.16 deleterious(0.01) probably_damaging(0.992) TCGA-60-2714-01 9 104238041 104238041 A T TMEM246 3'UTR 0.42 TCGA-60-2714-01 9 107361665 107361665 C A OR13C5 Silent p.V10V 0.24 TCGA-60-2714-01 9 111662644 111662644 C A IKBKAP Missense_Mutation p.G676C 0.28 tolerated(0.13) probably_damaging(0.925) TCGA-60-2714-01 9 113205959 113205959 C T SVEP1 Missense_Mutation p.C1502Y 0.26 probably_damaging(0.996) TCGA-60-2714-01 9 115421750 115421750 A T KIAA1958 Missense_Mutation p.S518C 0.15 deleterious(0.03) benign(0.129) TCGA-60-2714-01 9 119625949 119625949 T A ASTN2 Silent p.P600P 0.19 TCGA-60-2714-01 9 119903692 119903692 C T ASTN2 Intron 0.15 TCGA-60-2714-01 9 119976826 119976826 G T ASTN2 Missense_Mutation p.H276N 0.06 tolerated_low_confidence(0.09) unknown(0) TCGA-60-2714-01 9 119976827 119976827 G T ASTN2 Silent p.T275T 0.06 TCGA-60-2714-01 9 120476361 120476361 A G TLR4 Missense_Mutation p.Y652C 0.18 deleterious(0) probably_damaging(0.999) TCGA-60-2714-01 9 125145970 125145970 G A PTGS1 Silent p.L315L 0.16 TCGA-60-2714-01 9 125551517 125551517 C T OR5C1 Silent p.A102A 0.12 TCGA-60-2714-01 9 12704582 12704582 G A TYRP1 Missense_Mutation p.A380T 0.05 tolerated(0.07) probably_damaging(1) TCGA-60-2714-01 9 13138061 13138061 A T MPDZ Silent p.A1365A 0.39 TCGA-60-2714-01 9 136654377 136654377 C A VAV2 Intron 0.13 TCGA-60-2714-01 9 137775163 137775164 - T FCN2 Frame_Shift_Ins p.G78Wfs*57 0.26 TCGA-60-2714-01 9 137802983 137802983 A T FCN1 Missense_Mutation p.S243R 0.10 deleterious(0.01) benign(0.346) TCGA-60-2714-01 9 139354282 139354282 G A SEC16A Silent p.A1706A 0.09 TCGA-60-2714-01 9 140078139 140078139 G A ANAPC2 Missense_Mutation p.R385W 0.12 deleterious(0) probably_damaging(1) TCGA-60-2714-01 9 140811703 140811703 C T CACNA1B Silent p.P262P 0.11 TCGA-60-2714-01 9 16437020 16437020 G T BNC2 Missense_Mutation p.T391N 0.20 tolerated(0.39) benign(0.003) TCGA-60-2714-01 9 17330693 17330693 G T CNTLN Nonsense_Mutation p.E469* 0.20 TCGA-60-2714-01 9 19060087 19060087 C G HAUS6 Missense_Mutation p.L588F 0.12 tolerated(0.05) possibly_damaging(0.823) TCGA-60-2714-01 9 19786456 19786456 G T SLC24A2 Missense_Mutation p.L137M 0.29 deleterious(0) probably_damaging(0.993) TCGA-60-2714-01 9 32459400 32459400 G A DDX58 Missense_Mutation p.A817V 0.04 tolerated(0.09) benign(0.029) TCGA-60-2714-01 9 3262988 3262988 G A RFX3 Nonsense_Mutation p.Q518* 0.15 TCGA-60-2714-01 9 33442123 33442123 C G AQP3 Missense_Mutation p.G266A 0.19 tolerated(0.65) probably_damaging(0.999) TCGA-60-2714-01 9 35045592 35045592 C A C9orf131 Missense_Mutation p.P989H 0.44 deleterious(0.01) benign(0.35) TCGA-60-2714-01 9 35045614 35045614 C A C9orf131 Silent p.G996G 0.20 TCGA-60-2714-01 9 35107644 35107644 T A FAM214B Missense_Mutation p.S210C 0.51 deleterious_low_confidence(0.02) possibly_damaging(0.702) TCGA-60-2714-01 9 38395736 38395736 G T ALDH1B1 Splice_Site 0.07 TCGA-60-2714-01 9 39177333 39177333 G C CNTNAP3 Nonsense_Mutation p.Y303* 0.05 TCGA-60-2714-01 9 5919745 5919745 G A KIAA2026 Missense_Mutation p.A2084V 0.06 deleterious(0.02) benign(0.211) TCGA-60-2714-01 9 73151675 73151675 G T TRPM3 Missense_Mutation p.P1440T 0.24 tolerated_low_confidence(0.57) benign(0.03) TCGA-60-2714-01 9 75407143 75407143 C A TMC1 Missense_Mutation p.L481I 0.24 tolerated(0.4) benign(0.001) TCGA-60-2714-01 9 78943051 78943051 A T PCSK5 Missense_Mutation p.D1462V 0.13 deleterious(0.01) benign(0.091) TCGA-60-2714-01 9 79002161 79002161 T A RFK 3'UTR 0.24 TCGA-60-2714-01 9 79321474 79321474 G T PRUNE2 Missense_Mutation p.Q1906K 0.24 tolerated(1) benign(0.006) TCGA-60-2714-01 9 84562944 84562944 G T RP11-383M4.6 Intron 0.12 TCGA-60-2714-01 9 84606777 84606777 G A SPATA31D1 Silent p.L464L 0.15 TCGA-60-2714-01 9 86498767 86498767 C A KIF27 Missense_Mutation p.E802D 0.16 tolerated(0.13) benign(0.253) TCGA-60-2714-01 9 86518869 86518869 C A KIF27 Missense_Mutation p.M188I 0.22 tolerated(0.15) benign(0.016) TCGA-60-2714-01 X 10096088 10096088 C G WWC3 Missense_Mutation p.H723D 0.12 deleterious(0.01) benign(0.212) TCGA-60-2714-01 X 10174530 10174530 G T CLCN4 Missense_Mutation p.V230L 0.44 tolerated(0.17) benign(0.281) TCGA-60-2714-01 X 10201702 10201702 A G CLCN4 3'UTR 0.20 TCGA-60-2714-01 X 103494960 103494960 G A ESX1 Silent p.H390H 0.24 TCGA-60-2714-01 X 104463777 104463777 G C TEX13A Missense_Mutation p.H367D 0.30 deleterious(0.02) possibly_damaging(0.507) TCGA-60-2714-01 X 10535374 10535374 C A MID1 Missense_Mutation p.G72W 0.22 deleterious(0) probably_damaging(1) TCGA-60-2714-01 X 107935982 107935982 G T COL4A5 Silent p.T1511T 0.30 TCGA-60-2714-01 X 109696175 109696175 C T RGAG1 Missense_Mutation p.P777L 0.32 tolerated(0.17) benign(0.002) TCGA-60-2714-01 X 109764375 109764375 G T TDGF1P3 RNA 0.28 TCGA-60-2714-01 X 114357414 114357414 G T LRCH2 Missense_Mutation p.A670D 0.38 deleterious(0) probably_damaging(1) TCGA-60-2714-01 X 119572854 119572854 T C LAMP2 Intron 0.60 TCGA-60-2714-01 X 1321287 1321287 G A CRLF2 Silent p.F156F 0.18 TCGA-60-2714-01 X 138712002 138712002 G A MCF2 Missense_Mutation p.A157V 0.34 deleterious(0.01) benign(0.348) TCGA-60-2714-01 X 142718586 142718586 G T SLITRK4 Missense_Mutation p.H113Q 0.25 deleterious(0) probably_damaging(0.986) TCGA-60-2714-01 X 142803880 142803880 T C SPANXN2 5'UTR 0.10 TCGA-60-2714-01 X 144904507 144904507 C T SLITRK2 Silent p.L188L 0.31 TCGA-60-2714-01 X 14548115 14548115 A T GLRA2 5'UTR 0.27 TCGA-60-2714-01 X 146341191 146341191 C T MIR509-3 RNA 0.38 TCGA-60-2714-01 X 151358243 151358243 C - GABRA3 Frame_Shift_Del p.A368Lfs*13 0.26 TCGA-60-2714-01 X 152710773 152710773 G A TREX2 Missense_Mutation p.S39F 0.41 deleterious(0) probably_damaging(0.989) TCGA-60-2714-01 X 154774926 154774926 G T TMLHE Missense_Mutation p.H4Q 0.26 tolerated_low_confidence(0.29) benign(0.002) TCGA-60-2714-01 X 1746632 1746632 T A ASMT Silent p.V137V 0.20 TCGA-60-2714-01 X 21550150 21550150 G T CNKSR2 Missense_Mutation p.S423I 0.33 tolerated(0.5) benign(0.007) TCGA-60-2714-01 X 21627547 21627547 T A CNKSR2 Missense_Mutation p.L835Q 0.11 tolerated(0.63) benign(0.002) TCGA-60-2714-01 X 24580512 24580512 G T PCYT1B Silent p.P336P 0.35 TCGA-60-2714-01 X 27766422 27766422 C A DCAF8L2 Silent p.T470T 0.32 TCGA-60-2714-01 X 27840203 27840203 C A MAGEB10 Nonsense_Mutation p.Y260* 0.24 TCGA-60-2714-01 X 27999273 27999273 A C DCAF8L1 Missense_Mutation p.L60R 0.32 tolerated_low_confidence(0.46) benign(0.001) TCGA-60-2714-01 X 30872544 30872544 C A TAB3 Missense_Mutation p.G413V 0.34 deleterious(0.02) benign(0.444) TCGA-60-2714-01 X 34148211 34148211 C A FAM47A Missense_Mutation p.V729F 0.28 deleterious(0) possibly_damaging(0.903) TCGA-60-2714-01 X 3592735 3592735 A T PRKX Missense_Mutation p.M80K 0.37 deleterious(0) probably_damaging(0.972) TCGA-60-2714-01 X 39911419 39911419 C A BCOR Silent p.L1737L 0.20 TCGA-60-2714-01 X 47062054 47062054 G T UBA1 Silent p.L358L 0.28 TCGA-60-2714-01 X 53459297 53459297 C A HSD17B10 Silent p.V85V 0.33 TCGA-60-2714-01 X 5810741 5810741 A G NLGN4X 3'UTR 0.36 TCGA-60-2714-01 X 6069087 6069087 C G NLGN4X Missense_Mutation p.D141H 0.20 tolerated(0.16) possibly_damaging(0.827) TCGA-60-2714-01 X 64722464 64722464 C A ZC3H12B Missense_Mutation p.P629H 0.30 deleterious(0.02) benign(0.443) TCGA-60-2714-01 X 68381187 68381187 C T PJA1 Missense_Mutation p.C632Y 0.25 deleterious(0) probably_damaging(1) TCGA-60-2714-01 X 74670733 74670733 C A ZDHHC15 Nonsense_Mutation p.E95* 0.36 TCGA-60-2714-01 X 79937999 79937999 G T BRWD3 Missense_Mutation p.S1454R 0.48 tolerated(0.06) probably_damaging(0.994) TCGA-60-2714-01 X 79978273 79978273 A C BRWD3 Missense_Mutation p.M555R 0.07 deleterious(0) possibly_damaging(0.601) TCGA-60-2714-01 X 96502765 96502765 T C DIAPH2 Missense_Mutation p.V924A 0.34 tolerated(0.18) benign(0.115) TCGA-60-2714-01 X 9727442 9727442 C A GPR143 Missense_Mutation p.A129S 0.13 deleterious(0.01) benign(0.172) TCGA-60-2714-01 X 99854605 99854605 C A TNMD Missense_Mutation p.P282H 0.07 deleterious(0) probably_damaging(0.997) TCGA-60-2715-01 10 1043190 1043190 C T GTPBP4 Missense_Mutation p.T168I 0.04 deleterious(0.01) probably_damaging(0.997) TCGA-60-2715-01 10 118434726 118434726 G A HSPA12A Missense_Mutation p.R532W 0.05 deleterious(0) probably_damaging(0.978) TCGA-60-2715-01 10 129901609 129901609 T G MKI67 Missense_Mutation p.E2832A 0.10 tolerated(1) benign(0.002) TCGA-60-2715-01 10 21845583 21845583 T C MLLT10 Intron 0.07 TCGA-60-2715-01 10 26589987 26589987 A G GAD2 3'UTR 0.13 TCGA-60-2715-01 10 32322782 32322782 A C KIF5B Silent p.L432L 0.07 TCGA-60-2715-01 10 46914632 46914632 G A RP11-38L15.8 RNA 0.08 TCGA-60-2715-01 10 50723759 50723759 C T ERCC6-PGBD3 Missense_Mutation p.E936K 0.07 tolerated_low_confidence(0.14) unknown(0) TCGA-60-2715-01 11 1718724 1718724 T A KRTAP5-6 Nonsense_Mutation p.C83* 0.14 TCGA-60-2715-01 11 5537287 5537287 T C UBQLNL Missense_Mutation p.K129E 0.14 tolerated(0.32) benign(0.004) TCGA-60-2715-01 11 57297665 57297665 C T TIMM10 5'UTR 0.16 TCGA-60-2715-01 11 5809595 5809595 A C OR52N1 Missense_Mutation p.F151C 0.19 deleterious(0.01) benign(0.33) TCGA-60-2715-01 11 61295405 61295405 C T SYT7 Missense_Mutation p.E277K 0.09 deleterious(0) probably_damaging(0.975) TCGA-60-2715-01 11 618689 618689 G A CDHR5 Nonsense_Mutation p.Q624* 0.07 TCGA-60-2715-01 11 64525759 64525759 C A PYGM Nonsense_Mutation p.E163* 0.05 TCGA-60-2715-01 11 85692224 85692224 G T PICALM Missense_Mutation p.S576Y 0.04 tolerated(0.06) benign(0.001) TCGA-60-2715-01 12 100452092 100452092 C G UHRF1BP1L Missense_Mutation p.G988A 0.11 tolerated(0.64) benign(0.003) TCGA-60-2715-01 12 124209287 124209287 G T ATP6V0A2 Missense_Mutation p.E127D 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-60-2715-01 12 129360565 129360565 G T GLT1D1 Missense_Mutation p.A59S 0.19 deleterious(0.01) possibly_damaging(0.567) TCGA-60-2715-01 12 2778165 2778165 G T CACNA1C Missense_Mutation p.A1612S 0.07 deleterious(0.01) probably_damaging(0.972) TCGA-60-2715-01 12 52913973 52913973 G C KRT5 Silent p.S36S 0.08 TCGA-60-2715-01 13 110864803 110864803 C T COL4A1 Silent p.P116P 0.10 TCGA-60-2715-01 13 111138086 111138086 G A COL4A2 Missense_Mutation p.G1037E 0.07 possibly_damaging(0.887) TCGA-60-2715-01 13 35864575 35864575 G T NBEA Silent p.L1942L 0.12 TCGA-60-2715-01 13 46559779 46559779 C T ZC3H13 Missense_Mutation p.R458Q 0.07 unknown(0) TCGA-60-2715-01 13 50306891 50306891 T C KPNA3 Missense_Mutation p.I76V 0.11 tolerated(0.07) benign(0.202) TCGA-60-2715-01 13 58208468 58208468 G T PCDH17 Missense_Mutation p.Q596H 0.24 tolerated(0.64) benign(0.004) TCGA-60-2715-01 13 70514196 70514196 C A KLHL1 Missense_Mutation p.M330I 0.06 tolerated(0.05) benign(0.03) TCGA-60-2715-01 13 77760189 77760189 C G MYCBP2 Missense_Mutation p.E1383Q 0.08 benign(0.26) TCGA-60-2715-01 14 102916045 102916045 C T TECPR2 Missense_Mutation p.T1052I 0.07 deleterious(0) benign(0.382) TCGA-60-2715-01 14 102916046 102916046 A T TECPR2 Silent p.T1052T 0.06 TCGA-60-2715-01 14 104026793 104026793 C A BAG5 Nonsense_Mutation p.E278* 0.06 TCGA-60-2715-01 14 105415980 105415980 T C AHNAK2 Silent p.K1936K 0.05 TCGA-60-2715-01 14 22580363 22580363 G C TRAV25 5'UTR 0.10 TCGA-60-2715-01 14 64593522 64593522 C A SYNE2 Nonsense_Mutation p.Y4638* 0.06 TCGA-60-2715-01 14 67805337 67805337 A T ATP6V1D 3'UTR 0.05 TCGA-60-2715-01 14 81380730 81380730 T A CEP128 Missense_Mutation p.Q57L 0.09 deleterious(0.01) possibly_damaging(0.725) TCGA-60-2715-01 15 25953150 25953150 G A ATP10A Missense_Mutation p.R850C 0.20 deleterious(0.01) benign(0.025) TCGA-60-2715-01 16 24971010 24971010 C T ARHGAP17 Missense_Mutation p.E236K 0.06 tolerated(0.08) possibly_damaging(0.577) TCGA-60-2715-01 16 28841947 28841947 A G ATXN2L Missense_Mutation p.Y349C 0.13 deleterious(0) probably_damaging(0.991) TCGA-60-2715-01 16 30749733 30749733 C T SRCAP Missense_Mutation p.P2791L 0.06 unknown(0) TCGA-60-2715-01 16 31123627 31123627 G A BCKDK 3'UTR 0.08 TCGA-60-2715-01 16 3340467 3340467 C T ZNF263 Missense_Mutation p.T654M 0.12 deleterious(0) probably_damaging(0.997) TCGA-60-2715-01 16 69727791 69727791 C T NFAT5 Nonsense_Mutation p.Q1355* 0.08 TCGA-60-2715-01 16 88898492 88898492 A T GALNS Missense_Mutation p.F306I 0.14 deleterious(0.02) possibly_damaging(0.864) TCGA-60-2715-01 17 18188474 18188474 G A TOP3A Missense_Mutation p.A620V 0.13 tolerated(0.2) benign(0.104) TCGA-60-2715-01 17 36705423 36705423 G A SRCIN1 Missense_Mutation p.R996C 0.19 deleterious(0) probably_damaging(0.998) TCGA-60-2715-01 17 37949057 37949057 T C IKZF3 Missense_Mutation p.N98S 0.06 tolerated(0.95) benign(0.002) TCGA-60-2715-01 17 39394356 39394356 G A KRTAP9-8 Missense_Mutation p.C18Y 0.05 deleterious(0.03) unknown(0) TCGA-60-2715-01 17 52978259 52978259 C G TOM1L1 Nonsense_Mutation p.Y11* 0.06 TCGA-60-2715-01 17 62291306 62291306 G A TEX2 Missense_Mutation p.S91L 0.08 tolerated_low_confidence(0.27) benign(0.003) TCGA-60-2715-01 17 66267716 66267716 G T SLC16A6 Silent p.I195I 0.23 TCGA-60-2715-01 17 73698642 73698642 G A SAP30BP Missense_Mutation p.R160Q 0.09 deleterious(0) probably_damaging(0.99) TCGA-60-2715-01 17 7578387 7578388 GC - TP53 Frame_Shift_Del p.R181Lfs*4 0.28 TCGA-60-2715-01 17 80019200 80019200 C T DUS1L Missense_Mutation p.E243K 0.08 tolerated(0.14) benign(0.273) TCGA-60-2715-01 18 20573509 20573509 A G RBBP8 Silent p.P573P 0.11 TCGA-60-2715-01 19 19329873 19329873 C T NCAN Missense_Mutation p.R75W 0.09 deleterious(0) probably_damaging(1) TCGA-60-2715-01 19 19339016 19339016 G T NCAN Missense_Mutation p.V863L 0.06 tolerated(0.3) benign(0.002) TCGA-60-2715-01 19 36335017 36335017 G A NPHS1 Silent p.L734L 0.16 TCGA-60-2715-01 19 50165456 50165456 G C IRF3 Missense_Mutation p.T244R 0.09 tolerated(0.23) benign(0.045) TCGA-60-2715-01 19 54627995 54627995 G A PRPF31 Missense_Mutation p.G272D 0.05 deleterious(0.02) probably_damaging(1) TCGA-60-2715-01 19 56481994 56481994 A C NLRP8 Silent p.I822I 0.09 TCGA-60-2715-01 1 101185311 101185311 C T VCAM1 5'Flank 0.09 TCGA-60-2715-01 1 154544128 154544128 A G CHRNB2 Missense_Mutation p.T277A 0.08 deleterious(0) probably_damaging(1) TCGA-60-2715-01 1 156565284 156565284 A T GPATCH4 Missense_Mutation p.N283K 0.23 tolerated_low_confidence(1) benign(0.001) TCGA-60-2715-01 1 158263072 158263072 G T CD1C Silent p.V320V 0.05 TCGA-60-2715-01 1 158650398 158650398 T G SPTA1 Missense_Mutation p.N218T 0.17 deleterious(0) probably_damaging(0.997) TCGA-60-2715-01 1 161179712 161179712 A T NDUFS2 Silent p.G231G 0.06 TCGA-60-2715-01 1 19467977 19467977 A G UBR4 Silent p.N2784N 0.08 TCGA-60-2715-01 1 209933511 209933511 C G TRAF3IP3 Missense_Mutation p.R43G 0.05 deleterious(0) probably_damaging(0.942) TCGA-60-2715-01 1 220152836 220152836 C A EPRS Missense_Mutation p.R1278L 0.06 deleterious(0) possibly_damaging(0.573) TCGA-60-2715-01 1 237870287 237870287 A T RYR2 Missense_Mutation p.N3207Y 0.19 benign(0.001) TCGA-60-2715-01 1 247614915 247614915 G T OR2B11 Missense_Mutation p.L124M 0.17 deleterious(0) probably_damaging(0.996) TCGA-60-2715-01 1 3765275 3765275 G T CEP104 Missense_Mutation p.L62I 0.08 deleterious(0) probably_damaging(1) TCGA-60-2715-01 1 70482168 70482168 C T LRRC7 Missense_Mutation p.S386L 0.07 deleterious(0) benign(0.345) TCGA-60-2715-01 1 71534977 71534977 G C ZRANB2 Missense_Mutation p.S251C 0.06 deleterious(0) unknown(0) TCGA-60-2715-01 1 76280711 76280711 T C MSH4 Silent p.V235V 0.08 TCGA-60-2715-01 1 809689 809689 A T FAM41C 5'Flank 0.04 TCGA-60-2715-01 20 1285887 1285887 G C SNPH Missense_Mutation p.G225A 0.08 tolerated(0.5) benign(0.211) TCGA-60-2715-01 20 3209565 3209565 G A SLC4A11 Missense_Mutation p.A747V 0.05 deleterious(0) probably_damaging(0.966) TCGA-60-2715-01 20 33450711 33450711 C A GGT7 Nonsense_Mutation p.E155* 0.15 TCGA-60-2715-01 20 36560111 36560111 G A VSTM2L Missense_Mutation p.G66S 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-60-2715-01 20 54573676 54573676 T A CBLN4 Missense_Mutation p.K181N 0.04 deleterious(0.01) possibly_damaging(0.673) TCGA-60-2715-01 20 54941160 54941160 C T FAM210B Silent p.L132L 0.06 TCGA-60-2715-01 22 17443716 17443716 C T GAB4 Silent p.V544V 0.07 TCGA-60-2715-01 22 26997948 26997948 G T CRYBB1 Missense_Mutation p.A157D 0.17 deleterious(0.02) possibly_damaging(0.804) TCGA-60-2715-01 22 37888691 37888691 G T CARD10 Missense_Mutation p.D865E 0.11 deleterious(0.01) possibly_damaging(0.459) TCGA-60-2715-01 22 38122102 38122102 A G TRIOBP Missense_Mutation p.Q1180R 0.09 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-60-2715-01 22 39122020 39122020 G T GTPBP1 Silent p.P361P 0.10 TCGA-60-2715-01 22 44285398 44285398 C A PNPLA5 Silent p.L171L 0.06 TCGA-60-2715-01 2 102851383 102851383 G C IL1RL2 Missense_Mutation p.V442L 0.14 tolerated(0.26) benign(0.312) TCGA-60-2715-01 2 109086493 109086493 T C GCC2 Silent p.S236S 0.05 TCGA-60-2715-01 2 11770204 11770204 A T GREB1 Missense_Mutation p.E1527V 0.14 deleterious(0) probably_damaging(0.999) TCGA-60-2715-01 2 166909449 166909449 C T SCN1A Missense_Mutation p.V203I 0.05 tolerated(0.31) benign(0.038) TCGA-60-2715-01 2 179485341 179485341 T C TTN Missense_Mutation p.R15303G 0.06 TCGA-60-2715-01 2 228135511 228135511 C A COL4A3 Missense_Mutation p.P534Q 0.05 benign(0.383) TCGA-60-2715-01 2 27449096 27449096 T C CAD Missense_Mutation p.L647P 0.17 deleterious(0) benign(0.275) TCGA-60-2715-01 2 87085349 87085349 C T CD8B Silent p.G78G 0.09 TCGA-60-2715-01 3 127340632 127340632 A G MCM2 3'UTR 0.29 TCGA-60-2715-01 3 132071602 132071602 T C ACPP Silent p.D301D 0.12 TCGA-60-2715-01 3 147113823 147113823 C A ZIC4 Missense_Mutation p.Q218H 0.12 tolerated(0.08) probably_damaging(0.935) TCGA-60-2715-01 3 151161030 151161030 A T IGSF10 Nonsense_Mutation p.L1902* 0.04 TCGA-60-2715-01 3 167023649 167023649 C G ZBBX Missense_Mutation p.E503Q 0.10 deleterious(0.01) possibly_damaging(0.65) TCGA-60-2715-01 3 180324305 180324305 A T TTC14 Missense_Mutation p.E362D 0.05 tolerated(0.45) benign(0.079) TCGA-60-2715-01 3 180372682 180372682 G C CCDC39 Missense_Mutation p.I266M 0.15 tolerated(0.11) benign(0.06) TCGA-60-2715-01 3 182841950 182841950 G T LAMP3 Silent p.I390I 0.07 TCGA-60-2715-01 3 183778105 183778105 T A HTR3C Missense_Mutation p.S437T 0.09 tolerated(0.05) benign(0.356) TCGA-60-2715-01 3 183859720 183859720 C T EIF2B5 Silent p.N388N 0.05 TCGA-60-2715-01 3 196650360 196650360 C T SENP5 Missense_Mutation p.L654F 0.22 tolerated(0.18) probably_damaging(1) TCGA-60-2715-01 3 3139576 3139576 C A IL5RA Missense_Mutation p.Q229H 0.06 deleterious(0) possibly_damaging(0.612) TCGA-60-2715-01 3 39227577 39227577 G A XIRP1 Silent p.V1120V 0.06 TCGA-60-2715-01 3 46574382 46574382 T A LRRC2 Nonsense_Mutation p.K170* 0.06 TCGA-60-2715-01 3 52257452 52257452 T A TLR9 Missense_Mutation p.S448C 0.08 deleterious(0) probably_damaging(0.959) TCGA-60-2715-01 3 62423878 62423878 C T CADPS Silent p.G1226G 0.16 TCGA-60-2715-01 4 114277103 114277103 A G ANK2 Silent p.L2443L 0.06 TCGA-60-2715-01 4 126241388 126241388 C T FAT4 Silent p.D1274D 0.07 TCGA-60-2715-01 4 134071806 134071806 G T PCDH10 Missense_Mutation p.V171L 0.04 tolerated(0.1) probably_damaging(0.994) TCGA-60-2715-01 4 148549579 148549579 G A TMEM184C Missense_Mutation p.V189I 0.04 tolerated(1) benign(0.004) TCGA-60-2715-01 4 155219360 155219360 G A DCHS2 Missense_Mutation p.P1581S 0.06 deleterious(0) probably_damaging(0.965) TCGA-60-2715-01 4 187195476 187195476 G T F11 Intron 0.31 TCGA-60-2715-01 4 187539060 187539060 C A FAT1 Nonsense_Mutation p.E2894* 0.19 TCGA-60-2715-01 4 187554967 187554967 G A FAT1 Silent p.Y1398Y 0.05 TCGA-60-2715-01 4 3189537 3189537 G A HTT Missense_Mutation p.G1717R 0.03 benign(0.04) TCGA-60-2715-01 4 54292082 54292082 A G FIP1L1 Missense_Mutation p.I323V 0.04 deleterious(0) probably_damaging(0.982) TCGA-60-2715-01 4 95376450 95376450 A G PDLIM5 Missense_Mutation p.Y4C 0.05 deleterious(0) probably_damaging(0.994) TCGA-60-2715-01 5 13700924 13700924 T C DNAH5 Silent p.E4516E 0.05 TCGA-60-2715-01 5 31515208 31515208 C T DROSHA Missense_Mutation p.E393K 0.08 deleterious(0.04) benign(0.158) TCGA-60-2715-01 5 33937978 33937978 C T RXFP3 Missense_Mutation p.A378V 0.10 deleterious(0) probably_damaging(0.979) TCGA-60-2715-01 5 41186243 41186243 T C C6 Missense_Mutation p.K219E 0.15 tolerated(0.77) benign(0.031) TCGA-60-2715-01 5 63510147 63510147 C A RNF180 Missense_Mutation p.L332M 0.18 tolerated(0.05) possibly_damaging(0.86) TCGA-60-2715-01 5 82969301 82969301 C A HAPLN1 Missense_Mutation p.W14C 0.05 tolerated(0.2) benign(0.428) TCGA-60-2715-01 6 152660412 152660412 T G SYNE1 Missense_Mutation p.K4105N 0.04 probably_damaging(0.982) TCGA-60-2715-01 6 17640218 17640218 C A NUP153 Missense_Mutation p.A600S 0.05 deleterious(0) probably_damaging(0.979) TCGA-60-2715-01 6 17640222 17640222 T G NUP153 Missense_Mutation p.R598S 0.06 deleterious(0) benign(0.102) TCGA-60-2715-01 6 26234964 26234964 C T HIST1H1D Silent p.A66A 0.06 TCGA-60-2715-01 6 27114544 27114544 T A HIST1H2BK Nonsense_Mutation p.K12* 0.06 TCGA-60-2715-01 6 33381294 33381294 A G PHF1 Missense_Mutation p.N183D 0.20 deleterious(0.03) probably_damaging(0.978) TCGA-60-2715-01 6 34004261 34004261 G A GRM4 Silent p.C542C 0.25 TCGA-60-2715-01 6 39864710 39864710 G C DAAM2 Missense_Mutation p.V822L 0.14 tolerated(0.93) possibly_damaging(0.869) TCGA-60-2715-01 6 42713543 42713543 C G TBCC Missense_Mutation p.R90P 0.06 deleterious(0.01) probably_damaging(0.982) TCGA-60-2715-01 6 96053893 96053893 C T MANEA Missense_Mutation p.S334L 0.08 deleterious(0) probably_damaging(0.999) TCGA-60-2715-01 7 106791406 106791406 G T PRKAR2B Missense_Mutation p.A261S 0.09 tolerated(0.45) possibly_damaging(0.887) TCGA-60-2715-01 7 110764114 110764114 C G LRRN3 Missense_Mutation p.P429R 0.11 deleterious(0) probably_damaging(1) TCGA-60-2715-01 7 111448922 111448922 G A DOCK4 Missense_Mutation p.R1041W 0.06 deleterious(0) probably_damaging(0.987) TCGA-60-2715-01 7 113518838 113518838 T A PPP1R3A Missense_Mutation p.E770V 0.04 deleterious(0) probably_damaging(0.931) TCGA-60-2715-01 7 117007445 117007445 C T ASZ1 Silent p.L412L 0.10 TCGA-60-2715-01 7 143657678 143657678 T C OR2F1 Silent p.V205V 0.03 TCGA-60-2715-01 7 150648568 150648568 T C KCNH2 Missense_Mutation p.K638R 0.05 deleterious(0) probably_damaging(0.999) TCGA-60-2715-01 7 30791874 30791874 G A INMT Silent p.E36E 0.23 TCGA-60-2715-01 7 31862822 31862822 C A PDE1C Missense_Mutation p.V543F 0.16 deleterious(0.02) possibly_damaging(0.623) TCGA-60-2715-01 7 64453031 64453031 T G ERV3-1 Missense_Mutation p.Q125P 0.14 tolerated(0.19) benign(0.001) TCGA-60-2715-01 7 73604053 73604054 AC - EIF4H Frame_Shift_Del p.T100Ifs*23 0.15 TCGA-60-2715-01 7 87056086 87056086 C A ABCB4 Missense_Mutation p.D682Y 0.09 deleterious(0.02) benign(0.058) TCGA-60-2715-01 7 87179536 87179536 C A ABCB1 Missense_Mutation p.S434I 0.12 deleterious(0) probably_damaging(0.998) TCGA-60-2715-01 8 100514011 100514011 A T VPS13B Missense_Mutation p.S1323C 0.07 deleterious(0) probably_damaging(0.987) TCGA-60-2715-01 8 25897562 25897562 G A EBF2 Missense_Mutation p.T155M 0.10 deleterious(0) probably_damaging(1) TCGA-60-2715-01 8 70617409 70617409 T G SLCO5A1 Silent p.I493I 0.07 TCGA-60-2715-01 9 101981079 101981079 G A ALG2 Missense_Mutation p.R130W 0.09 tolerated(0.11) benign(0.104) TCGA-60-2715-01 9 2717996 2717996 C A KCNV2 Missense_Mutation p.P86H 0.29 tolerated(0.08) benign(0.002) TCGA-60-2715-01 9 8633316 8633316 C T PTPRD Splice_Site p.X118_splice 0.11 TCGA-60-2715-01 X 151336820 151336820 G A GABRA3 Silent p.S453S 0.15 TCGA-60-2715-01 X 51487663 51487663 C A GSPT2 Missense_Mutation p.A314D 0.16 deleterious(0) probably_damaging(0.997) TCGA-60-2715-01 X 79286039 79286039 C - TBX22 Frame_Shift_Del p.S333Lfs*3 0.10 TCGA-60-2716-01 11 44956549 44956552 AGCT - TP53I11 Frame_Shift_Del p.A152Rfs*95 0.47 TCGA-60-2716-01 11 6048215 6048215 C T OR56A1 Silent p.A240A 0.38 TCGA-60-2716-01 11 6621781 6621781 G A RRP8 Missense_Mutation p.R396C 0.47 deleterious(0) probably_damaging(1) TCGA-60-2716-01 12 100729660 100729660 C T SCYL2 Silent p.D667D 0.43 TCGA-60-2716-01 12 76443084 76443084 G C NAP1L1 Intron 0.32 TCGA-60-2716-01 15 31042640 31042640 C T ARHGAP11B RNA 0.22 TCGA-60-2716-01 15 64792172 64792172 T G ZNF609 Missense_Mutation p.V185G 0.35 tolerated(0.37) benign(0.311) TCGA-60-2716-01 17 2310426 2310426 C A AC006435.1 Missense_Mutation p.A116S 0.06 unknown(0) TCGA-60-2716-01 19 49692248 49692248 G A TRPM4 Missense_Mutation p.R640H 0.35 tolerated(0.12) benign(0.015) TCGA-60-2716-01 19 8399212 8399212 G A KANK3 Silent p.L473L 0.31 TCGA-60-2716-01 1 224463110 224463110 C A NVL Missense_Mutation p.K671N 0.38 deleterious(0.01) possibly_damaging(0.604) TCGA-60-2716-01 22 32546304 32546304 A G C22orf42 Splice_Site p.X218_splice 0.35 TCGA-60-2716-01 2 179500730 179500730 G A TTN Silent p.N13856N 0.36 TCGA-60-2716-01 2 20153694 20153694 G A WDR35 Missense_Mutation p.S445L 0.41 deleterious(0) benign(0.23) TCGA-60-2716-01 2 27726415 27726415 C G GCKR Missense_Mutation p.R227G 0.41 tolerated(0.22) possibly_damaging(0.587) TCGA-60-2716-01 3 38180352 38180352 T A MYD88 Missense_Mutation p.M67K 0.35 deleterious(0) possibly_damaging(0.499) TCGA-60-2716-01 5 11346700 11346700 C T CTNND2 Missense_Mutation p.R471H 0.40 deleterious(0) probably_damaging(0.991) TCGA-60-2716-01 5 138356904 138356904 G A SIL1 Silent p.L241L 0.34 TCGA-60-2716-01 5 2748954 2748954 C T IRX2 Missense_Mutation p.G290S 0.43 tolerated(0.13) possibly_damaging(0.543) TCGA-60-2716-01 5 36136526 36136526 C T LMBRD2 Missense_Mutation p.R211Q 0.43 deleterious(0.01) probably_damaging(0.99) TCGA-60-2716-01 6 152605157 152605157 A G SYNE1 Missense_Mutation p.S6055P 0.34 possibly_damaging(0.719) TCGA-60-2716-01 8 77617489 77617489 C A ZFHX4 Nonsense_Mutation p.S389* 0.34 TCGA-60-2716-01 9 91972418 91972418 C T SECISBP2 Missense_Mutation p.R736C 0.36 deleterious(0) probably_damaging(1) TCGA-60-2719-01 10 119013587 119013587 C T SLC18A2 Silent p.F184F 0.63 TCGA-60-2719-01 10 13900908 13900908 G A FRMD4A Missense_Mutation p.T17M 0.06 deleterious(0) probably_damaging(0.976) TCGA-60-2719-01 10 21959404 21959404 T A MLLT10 Silent p.S274S 0.57 TCGA-60-2719-01 10 43015152 43015152 G A ZNF37BP RNA 0.08 TCGA-60-2719-01 11 10503750 10503750 A G AMPD3 Silent p.A198A 0.37 TCGA-60-2719-01 11 113675696 113675696 G A USP28 Missense_Mutation p.L825F 0.36 deleterious(0) probably_damaging(0.999) TCGA-60-2719-01 11 124189986 124189986 C G OR8D2 Silent p.V36V 0.30 TCGA-60-2719-01 11 128843255 128843255 G A ARHGAP32 Missense_Mutation p.P1035L 0.44 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-60-2719-01 11 15247263 15247263 G A INSC Silent p.T400T 0.41 TCGA-60-2719-01 11 16760198 16760198 A T C11orf58 5'UTR 0.42 TCGA-60-2719-01 11 32421532 32421532 A C WT1 Missense_Mutation p.Y354D 0.37 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-60-2719-01 11 45935463 45935463 C A PEX16 Missense_Mutation p.G265V 0.38 tolerated(0.33) benign(0.098) TCGA-60-2719-01 11 47470539 47470539 C T RAPSN 5'UTR 0.38 TCGA-60-2719-01 11 4967668 4967668 C G OR51A4 Silent p.L221L 0.30 TCGA-60-2719-01 11 56058339 56058339 G T OR8H1 Nonsense_Mutation p.S67* 0.36 TCGA-60-2719-01 11 56143157 56143157 C A OR8U1 Missense_Mutation p.H20N 0.26 tolerated(0.3) benign(0.01) TCGA-60-2719-01 11 59225269 59225269 C - OR4D6 Frame_Shift_Del p.M281Cfs*2 0.33 TCGA-60-2719-01 11 6023374 6023374 G T OR56A4 Missense_Mutation p.H335Q 0.40 deleterious(0) probably_damaging(0.983) TCGA-60-2719-01 11 65268722 65268723 AT - MALAT1 RNA 0.11 TCGA-60-2719-01 11 6704585 6704585 G C MRPL17 5'UTR 0.45 TCGA-60-2719-01 11 6816012 6816012 G C OR6A2 Missense_Mutation p.L310V 0.39 tolerated(0.07) benign(0.071) TCGA-60-2719-01 11 6898608 6898608 G A OR10A4 Missense_Mutation p.A244T 0.40 deleterious(0) benign(0.009) TCGA-60-2719-01 12 104682705 104682705 A G TXNRD1 Intron 0.15 TCGA-60-2719-01 12 10601872 10601872 G A KLRC1 Silent p.N151N 0.37 TCGA-60-2719-01 12 108985855 108985855 C A TMEM119 Missense_Mutation p.G102V 0.41 deleterious(0) probably_damaging(1) TCGA-60-2719-01 12 117402577 117402577 C T FBXW8 Silent p.D251D 0.29 TCGA-60-2719-01 12 123751808 123751808 G A CDK2AP1 Missense_Mutation p.S26F 0.35 deleterious(0.01) possibly_damaging(0.591) TCGA-60-2719-01 12 128899884 128899884 C A TMEM132C Silent p.T231T 0.31 TCGA-60-2719-01 12 129467685 129467685 A G GLT1D1 3'UTR 0.30 TCGA-60-2719-01 12 22487151 22487151 G T ST8SIA1 Silent p.R6R 0.38 TCGA-60-2719-01 12 30888129 30888129 C G CAPRIN2 Silent p.A194A 0.31 TCGA-60-2719-01 12 42792791 42792791 G A PPHLN1 Missense_Mutation p.E302K 0.38 deleterious(0.03) probably_damaging(0.93) TCGA-60-2719-01 12 49110465 49110465 T C CCNT1 5'UTR 0.05 TCGA-60-2719-01 12 49110466 49110466 C A CCNT1 5'UTR 0.05 TCGA-60-2719-01 12 52867043 52867043 C T KRT6C Missense_Mutation p.R160Q 0.34 deleterious(0.01) probably_damaging(0.914) TCGA-60-2719-01 12 72425647 72425647 A G TPH2 3'UTR 0.57 TCGA-60-2719-01 12 77216233 77216233 G T ZDHHC17 Missense_Mutation p.M273I 0.28 tolerated(1) benign(0.001) TCGA-60-2719-01 12 8077098 8077098 C T SLC2A3 Missense_Mutation p.V326M 0.19 tolerated(0.19) probably_damaging(0.928) TCGA-60-2719-01 12 81101662 81101662 A T MYF6 Missense_Mutation p.D55V 0.40 tolerated(0.08) possibly_damaging(0.759) TCGA-60-2719-01 13 100518606 100518606 A T CLYBL Silent p.R249R 0.58 TCGA-60-2719-01 13 66878658 66878658 C A PCDH9 3'UTR 0.63 TCGA-60-2719-01 14 20216294 20216294 G T OR4Q3 Missense_Mutation p.K236N 0.12 deleterious(0) possibly_damaging(0.815) TCGA-60-2719-01 14 23895275 23895275 G T MYH7 Missense_Mutation p.P687H 0.31 tolerated(0.6) benign(0.026) TCGA-60-2719-01 14 25043635 25043635 C T CTSG Missense_Mutation p.R137K 0.38 tolerated(1) benign(0.035) TCGA-60-2719-01 14 39304990 39304990 A T LINC00639 RNA 0.58 TCGA-60-2719-01 14 89037457 89037457 C G ZC3H14 Missense_Mutation p.S75C 0.49 tolerated(0.06) probably_damaging(0.999) TCGA-60-2719-01 14 94088544 94088544 C T UNC79 Silent p.G1478G 0.24 TCGA-60-2719-01 14 94845910 94845910 C A SERPINA1 Missense_Mutation p.G319V 0.59 deleterious(0) probably_damaging(0.996) TCGA-60-2719-01 15 22332765 22332765 G C RP11-69H14.6 RNA 0.26 TCGA-60-2719-01 15 35085622 35085622 T C ACTC1 Missense_Mutation p.Y93C 0.36 deleterious_low_confidence(0) probably_damaging(0.936) TCGA-60-2719-01 15 42144471 42144471 C T SPTBN5 Missense_Mutation p.G3498E 0.35 benign(0.079) TCGA-60-2719-01 15 43568498 43568498 G T TGM7 3'UTR 0.48 TCGA-60-2719-01 15 45697670 45697670 G T SPATA5L1 Missense_Mutation p.E414D 0.44 deleterious(0.03) benign(0.163) TCGA-60-2719-01 15 48063194 48063194 A G SEMA6D Missense_Mutation p.S812G 0.35 tolerated(0.35) benign(0.311) TCGA-60-2719-01 15 52258114 52258114 G A LEO1 Missense_Mutation p.R216W 0.38 deleterious_low_confidence(0) benign(0.2) TCGA-60-2719-01 15 55790004 55790004 A G DYX1C1 Silent p.D59D 0.39 TCGA-60-2719-01 15 65054705 65054705 T C RBPMS2 Intron 0.35 TCGA-60-2719-01 15 65680905 65680905 C A IGDCC4 Missense_Mutation p.E909D 0.35 tolerated(0.25) probably_damaging(0.922) TCGA-60-2719-01 15 68603377 68603377 G A ITGA11 Silent p.Y1043Y 0.32 TCGA-60-2719-01 15 72499082 72499082 C A PKM Missense_Mutation p.R376L 0.37 tolerated(0.3) benign(0.001) TCGA-60-2719-01 16 1470177 1470177 G A C16orf91 Missense_Mutation p.R280C 0.66 deleterious_low_confidence(0) benign(0.011) TCGA-60-2719-01 16 21281170 21281170 C A CRYM Missense_Mutation p.A144S 0.53 tolerated(0.76) benign(0.114) TCGA-60-2719-01 16 22447030 22447030 A G RRN3P3 RNA 0.55 TCGA-60-2719-01 16 3828022 3828022 C T CREBBP Silent p.V701V 0.59 TCGA-60-2719-01 16 58011824 58011824 C A TEPP Missense_Mutation p.A90E 0.70 deleterious(0) probably_damaging(0.96) TCGA-60-2719-01 16 89809333 89809333 C G FANCA Missense_Mutation p.E1214Q 0.69 tolerated(0.37) benign(0.19) TCGA-60-2719-01 17 10431192 10431192 C G MYH2 Splice_Site p.X1249_splice 0.71 TCGA-60-2719-01 17 37119235 37119235 T C FBXO47 Missense_Mutation p.Q15R 0.67 deleterious(0.04) benign(0.118) TCGA-60-2719-01 17 4910576 4910576 G C KIF1C Missense_Mutation p.A452P 0.67 deleterious(0) possibly_damaging(0.908) TCGA-60-2719-01 17 71281876 71281876 T C CDC42EP4 Missense_Mutation p.Y255C 0.50 tolerated(0.18) benign(0) TCGA-60-2719-01 17 7231109 7231109 C - NEURL4 Frame_Shift_Del p.G126Afs*4 0.73 TCGA-60-2719-01 17 75316336 75316336 G A SEPT9 Intron 0.26 TCGA-60-2719-01 17 7578272 7578272 G C TP53 Missense_Mutation p.H193D 0.61 deleterious(0) probably_damaging(1) TCGA-60-2719-01 18 28721973 28721973 A G DSC1 Missense_Mutation p.C417R 0.24 deleterious(0.02) probably_damaging(0.912) TCGA-60-2719-01 18 32677486 32677486 G A MAPRE2 Silent p.K109K 0.44 TCGA-60-2719-01 18 67741225 67741225 C A RTTN Missense_Mutation p.D1524Y 0.35 deleterious(0) probably_damaging(0.994) TCGA-60-2719-01 19 12060436 12060436 G C ZNF700 Missense_Mutation p.E533Q 0.39 deleterious(0.03) possibly_damaging(0.593) TCGA-60-2719-01 19 23159228 23159228 G T ZNF728 Missense_Mutation p.T304K 0.62 tolerated(0.54) benign(0) TCGA-60-2719-01 19 3006571 3006571 C A TLE2 Silent p.R449R 0.50 TCGA-60-2719-01 19 3006572 3006572 C G TLE2 Missense_Mutation p.R449P 0.50 deleterious(0) possibly_damaging(0.777) TCGA-60-2719-01 19 31039356 31039356 C A ZNF536 Missense_Mutation p.P944T 0.32 tolerated(0.44) benign(0.013) TCGA-60-2719-01 19 33424558 33424558 G A CEP89 Missense_Mutation p.R229C 0.31 deleterious(0) probably_damaging(0.988) TCGA-60-2719-01 19 39819164 39819164 C T GMFG Missense_Mutation p.D128N 0.19 tolerated(0.05) benign(0.006) TCGA-60-2719-01 19 45731017 45731017 C A EXOC3L2 Missense_Mutation p.V103L 0.63 deleterious(0) possibly_damaging(0.765) TCGA-60-2719-01 19 49227971 49227971 C T RASIP1 Intron 0.53 TCGA-60-2719-01 19 52723042 52723042 G T PPP2R1A Silent p.V409V 0.07 TCGA-60-2719-01 19 52723043 52723043 G T PPP2R1A Nonsense_Mutation p.E410* 0.06 TCGA-60-2719-01 19 55602904 55602904 T A PPP1R12C Missense_Mutation p.D762V 0.77 deleterious(0) probably_damaging(0.996) TCGA-60-2719-01 19 56520216 56520216 C T NLRP5 Missense_Mutation p.P169S 0.11 tolerated(0.1) benign(0.054) TCGA-60-2719-01 19 6707088 6707088 C A C3 Missense_Mutation p.R748S 0.45 deleterious(0) possibly_damaging(0.558) TCGA-60-2719-01 19 9090002 9090002 C A MUC16 Missense_Mutation p.V605F 0.29 unknown(0) TCGA-60-2719-01 1 103474062 103474062 C A COL11A1 Missense_Mutation p.G547V 0.49 unknown(0) TCGA-60-2719-01 1 114354481 114354481 T C RSBN1 Missense_Mutation p.H185R 0.42 deleterious_low_confidence(0.05) benign(0.032) TCGA-60-2719-01 1 117150571 117150571 G T IGSF3 Silent p.L405L 0.08 TCGA-60-2719-01 1 151109537 151109537 C A SEMA6C Missense_Mutation p.R257L 0.24 deleterious(0) possibly_damaging(0.447) TCGA-60-2719-01 1 152551971 152551971 T C LCE3D 3'UTR 0.42 TCGA-60-2719-01 1 15541865 15541865 C T TMEM51 Silent p.G94G 0.39 TCGA-60-2719-01 1 159163672 159163672 G A CADM3 Missense_Mutation p.R212H 0.26 tolerated(0.08) benign(0.322) TCGA-60-2719-01 1 160147268 160147268 C G ATP1A4 Intron 0.18 TCGA-60-2719-01 1 160808664 160808664 G A CD244 Intron 0.23 TCGA-60-2719-01 1 162774108 162774108 G A HSD17B7 Missense_Mutation p.A267T 0.37 deleterious(0) possibly_damaging(0.78) TCGA-60-2719-01 1 167097199 167097199 C A DUSP27 Missense_Mutation p.T944K 0.19 deleterious(0) benign(0.198) TCGA-60-2719-01 1 16935166 16935166 C A NBPF1 5'UTR 0.11 TCGA-60-2719-01 1 181018234 181018234 C - MR1 Frame_Shift_Del p.H39Mfs*50 0.36 TCGA-60-2719-01 1 185125643 185125643 A C TRMT1L Missense_Mutation p.S68A 0.50 deleterious_low_confidence(0.04) benign(0.097) TCGA-60-2719-01 1 185153960 185153960 C G SWT1 Silent p.A442A 0.46 TCGA-60-2719-01 1 19454211 19454211 C T UBR4 Missense_Mutation p.R3045H 0.04 probably_damaging(0.998) TCGA-60-2719-01 1 19478225 19478225 C A UBR4 Missense_Mutation p.M2375I 0.39 benign(0.007) TCGA-60-2719-01 1 19478226 19478226 A T UBR4 Missense_Mutation p.M2375K 0.39 benign(0.17) TCGA-60-2719-01 1 201752839 201752839 T A NAV1 Missense_Mutation p.L888H 0.21 deleterious(0) probably_damaging(1) TCGA-60-2719-01 1 207646387 207646387 C T CR2 Missense_Mutation p.S614F 0.23 tolerated(0.06) benign(0.072) TCGA-60-2719-01 1 216896669 216896669 C A ESRRG 5'UTR 0.20 TCGA-60-2719-01 1 226475435 226475435 G A LIN9 Missense_Mutation p.R126C 0.45 deleterious(0) probably_damaging(0.973) TCGA-60-2719-01 1 228495859 228495859 G A OBSCN Missense_Mutation p.A5129T 0.22 possibly_damaging(0.816) TCGA-60-2719-01 1 23397826 23397826 C G KDM1A Missense_Mutation p.H508D 0.34 tolerated(0.62) benign(0.151) TCGA-60-2719-01 1 241519099 241519099 C A RGS7 5'UTR 0.42 TCGA-60-2719-01 1 247588143 247588143 C A NLRP3 Silent p.L466L 0.20 TCGA-60-2719-01 1 248756875 248756875 C G OR2T10 Missense_Mutation p.Q65H 0.41 tolerated(0.14) benign(0.421) TCGA-60-2719-01 1 62483535 62483535 A G INADL Missense_Mutation p.N1292S 0.38 tolerated(0.07) benign(0.424) TCGA-60-2719-01 1 70225900 70225900 C T LRRC7 Missense_Mutation p.R5W 0.13 deleterious(0) probably_damaging(0.993) TCGA-60-2719-01 1 70716350 70716350 A G SRSF11 Silent p.K439K 0.30 TCGA-60-2719-01 1 91405548 91405548 G A ZNF644 Missense_Mutation p.R455W 0.04 deleterious(0) probably_damaging(0.999) TCGA-60-2719-01 1 94685819 94685819 A G ARHGAP29 Missense_Mutation p.V112A 0.42 deleterious(0) possibly_damaging(0.817) TCGA-60-2719-01 20 20180530 20180530 C T C20orf26 Missense_Mutation p.A639V 0.31 tolerated(0.1) benign(0.205) TCGA-60-2719-01 20 20269293 20269293 C T C20orf26 Missense_Mutation p.T946M 0.30 deleterious(0) probably_damaging(0.913) TCGA-60-2719-01 20 23472353 23472353 G T CST8 Missense_Mutation p.A17S 0.31 deleterious(0.02) benign(0.007) TCGA-60-2719-01 20 2774852 2774852 C A CPXM1 Missense_Mutation p.R730M 0.36 deleterious_low_confidence(0) possibly_damaging(0.789) TCGA-60-2719-01 20 62737573 62737573 G C NPBWR2 Silent p.P204P 0.41 TCGA-60-2719-01 21 22804589 22804589 C A NCAM2 Missense_Mutation p.H548N 0.70 tolerated(0.27) benign(0.068) TCGA-60-2719-01 21 31023582 31023582 A G GRIK1 Silent p.Y270Y 0.71 TCGA-60-2719-01 22 17264895 17264895 C T XKR3 Missense_Mutation p.D332N 0.26 tolerated(0.22) benign(0.03) TCGA-60-2719-01 22 26164516 26164516 G A MYO18B Silent p.P211P 0.57 TCGA-60-2719-01 22 31289967 31289967 T C OSBP2 Missense_Mutation p.L785P 0.40 deleterious(0) probably_damaging(0.995) TCGA-60-2719-01 22 47087573 47087573 C G CERK Missense_Mutation p.A410P 0.43 deleterious(0.01) possibly_damaging(0.52) TCGA-60-2719-01 2 100182031 100182031 C T AFF3 Missense_Mutation p.E1038K 0.39 deleterious(0) probably_damaging(0.99) TCGA-60-2719-01 2 135779388 135779388 T C MAP3K19 Missense_Mutation p.E12G 0.25 deleterious_low_confidence(0.04) benign(0.276) TCGA-60-2719-01 2 160303316 160303316 T C BAZ2B Missense_Mutation p.R225G 0.38 benign(0.152) TCGA-60-2719-01 2 173427012 173427012 A G PDK1 Missense_Mutation p.I135V 0.36 tolerated(0.12) benign(0.001) TCGA-60-2719-01 2 179584771 179584771 A G TTN Silent p.Y7866Y 0.25 TCGA-60-2719-01 2 187500923 187500923 A G ITGAV Missense_Mutation p.D249G 0.14 deleterious(0) possibly_damaging(0.579) TCGA-60-2719-01 2 198281577 198281577 T C SF3B1 Missense_Mutation p.N185S 0.42 tolerated(0.4) benign(0.001) TCGA-60-2719-01 2 201283977 201283977 A G SPATS2L Missense_Mutation p.N68S 0.44 tolerated(0.13) probably_damaging(0.996) TCGA-60-2719-01 2 206921016 206921016 G A INO80D Silent p.F290F 0.24 TCGA-60-2719-01 2 21224477 21224477 G A APOB 3'UTR 0.43 TCGA-60-2719-01 2 220078648 220078648 G A ABCB6 Missense_Mutation p.S493L 0.44 deleterious(0) probably_damaging(0.987) TCGA-60-2719-01 2 223158518 223158518 A T PAX3 Intron 0.38 TCGA-60-2719-01 2 229996 229996 C A SH3YL1 Missense_Mutation p.A251S 0.39 tolerated(0.5) benign(0.001) TCGA-60-2719-01 2 27720154 27720154 A C GCKR Missense_Mutation p.N35T 0.04 deleterious(0) probably_damaging(0.999) TCGA-60-2719-01 2 29045243 29045243 G T SPDYA Missense_Mutation p.S116I 0.42 deleterious(0.04) benign(0.317) TCGA-60-2719-01 2 42472648 42472648 A G EML4 Missense_Mutation p.D10G 0.53 deleterious(0) probably_damaging(0.999) TCGA-60-2719-01 2 48035532 48035532 T C FBXO11 Missense_Mutation p.I864V 0.34 deleterious(0) benign(0.158) TCGA-60-2719-01 2 48873991 48873991 T A STON1-GTF2A1L Missense_Mutation p.V967E 0.39 deleterious(0.02) possibly_damaging(0.782) TCGA-60-2719-01 2 56420458 56420458 G A CCDC85A Missense_Mutation p.G375R 0.44 tolerated_low_confidence(0.38) benign(0.064) TCGA-60-2719-01 2 68385550 68385550 T C PNO1 Silent p.A82A 0.41 TCGA-60-2719-01 2 71913654 71913654 G T DYSF 3'UTR 0.39 TCGA-60-2719-01 2 74719361 74719361 G C TTC31 Intron 0.11 TCGA-60-2719-01 2 80096990 80096990 C A CTNNA2 Missense_Mutation p.L172I 0.37 deleterious(0.03) possibly_damaging(0.528) TCGA-60-2719-01 2 80529586 80529586 G A LRRTM1 Silent p.F453F 0.10 TCGA-60-2719-01 2 84518028 84518028 G T FUNDC2P2 RNA 0.30 TCGA-60-2719-01 2 88056283 88056283 G T RGPD2 3'UTR 0.38 TCGA-60-2719-01 2 89309488 89309488 A G IGKV1-9 Silent p.N114N 0.37 TCGA-60-2719-01 2 8938353 8938353 A C KIDINS220 Silent p.P326P 0.38 TCGA-60-2719-01 2 90121978 90121978 C A IGKV1D-17 Missense_Mutation p.P66T 0.35 deleterious(0) possibly_damaging(0.537) TCGA-60-2719-01 2 95522755 95522755 C G ANKRD20A8P RNA 0.06 TCGA-60-2719-01 3 111325749 111325749 G T CD96 Intron 0.18 TCGA-60-2719-01 3 12195884 12195884 C A TIMP4 Silent p.L140L 0.64 TCGA-60-2719-01 3 136076678 136076678 C T STAG1 Silent p.E983E 0.45 TCGA-60-2719-01 3 160118637 160118637 C T SMC4 Missense_Mutation p.P8L 0.23 tolerated_low_confidence(0.2) benign(0) TCGA-60-2719-01 3 160232714 160232714 C A KPNA4 Intron 0.18 TCGA-60-2719-01 3 166960360 166960360 T C ZBBX Missense_Mutation p.S776G 0.67 tolerated(0.06) probably_damaging(0.999) TCGA-60-2719-01 3 172166129 172166129 G A GHSR Silent p.P25P 0.24 TCGA-60-2719-01 3 172224255 172224255 G A TNFSF10 3'UTR 0.06 TCGA-60-2719-01 3 179110004 179110004 T C MFN1 3'UTR 0.27 TCGA-60-2719-01 3 184297317 184297317 T A EPHB3 Missense_Mutation p.N618K 0.12 deleterious(0.03) probably_damaging(1) TCGA-60-2719-01 3 19436804 19436804 G A KCNH8 Splice_Site p.X393_splice 0.57 TCGA-60-2719-01 3 44636769 44636769 C T ZNF660 3'UTR 0.56 TCGA-60-2719-01 3 63981634 63981634 A G ATXN7 Silent p.P712P 0.63 TCGA-60-2719-01 3 66436511 66436511 G T LRIG1 Silent p.I561I 0.64 TCGA-60-2719-01 3 99649618 99649618 G T FILIP1L Missense_Mutation p.L83M 0.21 deleterious(0.01) probably_damaging(0.932) TCGA-60-2719-01 4 110662170 110662170 A G CFI Missense_Mutation p.V544A 0.04 deleterious(0.03) probably_damaging(0.967) TCGA-60-2719-01 4 126240503 126240503 T A FAT4 Missense_Mutation p.S979R 0.54 possibly_damaging(0.694) TCGA-60-2719-01 4 178272630 178272630 C T NEIL3 Silent p.T322T 0.54 TCGA-60-2719-01 4 66189926 66189926 C A EPHA5 Missense_Mutation p.R1007L 0.44 deleterious(0.01) benign(0.009) TCGA-60-2719-01 4 94436493 94436493 G C GRID2 Missense_Mutation p.M708I 0.48 deleterious(0.01) possibly_damaging(0.818) TCGA-60-2719-01 5 11346612 11346612 C A CTNND2 Silent p.A500A 0.61 TCGA-60-2719-01 5 140475135 140475135 C T PCDHB2 Missense_Mutation p.P254L 0.56 tolerated_low_confidence(0.27) benign(0.027) TCGA-60-2719-01 5 149452886 149452886 C G CSF1R Missense_Mutation p.A354P 0.63 tolerated(0.2) benign(0.071) TCGA-60-2719-01 5 150311106 150311106 G A ZNF300P1 RNA 0.67 TCGA-60-2719-01 5 156390197 156390197 G T TIMD4 Missense_Mutation p.P5T 0.69 tolerated(0.14) benign(0.017) TCGA-60-2719-01 5 156787368 156787368 T A CYFIP2 Missense_Mutation p.Y940N 0.56 deleterious(0) probably_damaging(0.953) TCGA-60-2719-01 5 161580117 161580117 C G GABRG2 Missense_Mutation p.R431G 0.54 tolerated(0.18) possibly_damaging(0.766) TCGA-60-2719-01 5 171766540 171766540 A T SH3PXD2B Silent p.P523P 0.70 TCGA-60-2719-01 5 24535250 24535250 A T CDH10 Missense_Mutation p.V262D 0.04 deleterious(0) probably_damaging(0.921) TCGA-60-2719-01 6 110056478 110056478 G T FIG4 Missense_Mutation p.G208V 0.34 tolerated(0.06) possibly_damaging(0.824) TCGA-60-2719-01 6 118801596 118801596 T C CEP85L Missense_Mutation p.N612S 0.38 deleterious(0.05) probably_damaging(0.999) TCGA-60-2719-01 6 139583798 139583798 C T TXLNB Missense_Mutation p.R267Q 0.41 deleterious(0) probably_damaging(0.998) TCGA-60-2719-01 6 146720537 146720537 G C GRM1 Missense_Mutation p.A788P 0.35 deleterious(0) probably_damaging(0.997) TCGA-60-2719-01 6 151161857 151161857 G A PLEKHG1 Missense_Mutation p.R1328H 0.07 deleterious(0.02) benign(0) TCGA-60-2719-01 6 160525909 160525909 G T IGF2R Silent p.S2423S 0.33 TCGA-60-2719-01 6 17675990 17675990 T C NUP153 Missense_Mutation p.T116A 0.36 deleterious(0.03) benign(0.292) TCGA-60-2719-01 6 19838206 19838206 G T ID4 Missense_Mutation p.R74L 0.60 deleterious(0) possibly_damaging(0.859) TCGA-60-2719-01 6 26505264 26505264 C A BTN1A1 Missense_Mutation p.S180Y 0.35 deleterious(0) benign(0.446) TCGA-60-2719-01 6 29342373 29342373 C A OR12D3 Missense_Mutation p.R231I 0.48 deleterious(0.01) benign(0.222) TCGA-60-2719-01 6 29408069 29408069 C T OR10C1 Missense_Mutation p.R93C 0.36 deleterious(0.01) possibly_damaging(0.759) TCGA-60-2719-01 6 32018015 32018015 T A TNXB 5'Flank 0.31 TCGA-60-2719-01 6 32138613 32138613 A C AGPAT1 Intron 0.39 TCGA-60-2719-01 6 33137206 33137206 G A COL11A2 Missense_Mutation p.P1165L 0.41 unknown(0) TCGA-60-2719-01 6 38830121 38830121 G A DNAH8 Missense_Mutation p.G1849D 0.32 probably_damaging(1) TCGA-60-2719-01 6 43190553 43190554 CA G CUL9 Frame_Shift_Del p.Q2357Gfs*83 0.34 TCGA-60-2719-01 6 44249916 44249916 G C TCTE1 Silent p.L409L 0.38 TCGA-60-2719-01 6 46107441 46107441 C T ENPP4 Silent p.L41L 0.04 TCGA-60-2719-01 6 83748153 83748153 C T UBE3D Missense_Mutation p.G217R 0.34 deleterious(0.02) probably_damaging(0.965) TCGA-60-2719-01 7 122765635 122765635 T C SLC13A1 Missense_Mutation p.T410A 0.37 tolerated(0.59) benign(0.005) TCGA-60-2719-01 7 128492892 128492892 C T FLNC Silent p.F2005F 0.41 TCGA-60-2719-01 7 135048771 135048771 C A CNOT4 Missense_Mutation p.G559W 0.26 deleterious(0) probably_damaging(0.999) TCGA-60-2719-01 7 21621629 21621629 C G DNAH11 Missense_Mutation p.A567G 0.32 benign(0.015) TCGA-60-2719-01 7 21646301 21646301 T A DNAH11 Missense_Mutation p.Y1268N 0.36 benign(0.003) TCGA-60-2719-01 7 21730458 21730458 T A DNAH11 Silent p.A2007A 0.34 TCGA-60-2719-01 7 21757534 21757534 C A DNAH11 Missense_Mutation p.S2382R 0.29 probably_damaging(0.988) TCGA-60-2719-01 7 37298804 37298804 A G ELMO1 Missense_Mutation p.M132T 0.26 deleterious(0.03) benign(0.145) TCGA-60-2719-01 7 4308501 4308501 G A SDK1 3'UTR 0.25 TCGA-60-2719-01 7 43496007 43496007 G C HECW1 Missense_Mutation p.R871T 0.25 deleterious(0.01) benign(0.027) TCGA-60-2719-01 7 57509957 57509957 C A ZNF716 5'UTR 0.21 TCGA-60-2719-01 7 57529194 57529194 A G ZNF716 Missense_Mutation p.K343E 0.37 deleterious(0.05) probably_damaging(0.994) TCGA-60-2719-01 7 66660197 66660217 CCATGGCCCACGTGCCCTGGC GT TYW1 Frame_Shift_Del p.T617Sfs*15 0.49 TCGA-60-2719-01 7 66660217 66660217 C T TYW1 Missense_Mutation p.H624Y 0.31 deleterious(0) benign(0.091) TCGA-60-2719-01 7 72411366 72411366 G A POM121 Silent p.S294S 0.19 TCGA-60-2719-01 7 86416271 86416271 C A GRM3 Missense_Mutation p.S388Y 0.16 deleterious(0) probably_damaging(0.99) TCGA-60-2719-01 7 90419918 90419918 G A CDK14 Silent p.V147V 0.36 TCGA-60-2719-01 7 90895353 90895353 C T FZD1 Silent p.A386A 0.34 TCGA-60-2719-01 8 139180147 139180147 G A FAM135B Missense_Mutation p.P417S 0.21 deleterious(0) probably_damaging(0.996) TCGA-60-2719-01 8 143956549 143956549 A G CYP11B1 Missense_Mutation p.Y408H 0.54 deleterious(0) probably_damaging(0.987) TCGA-60-2719-01 8 25296837 25296837 G A KCTD9 Missense_Mutation p.R153C 0.09 deleterious(0) probably_damaging(0.964) TCGA-60-2719-01 8 30567337 30567337 T C GSR Missense_Mutation p.N139S 0.69 tolerated(0.27) benign(0.003) TCGA-60-2719-01 8 3855524 3855524 G A CSMD1 Missense_Mutation p.A240V 0.53 probably_damaging(0.911) TCGA-60-2719-01 8 42552680 42552680 T C CHRNB3 5'UTR 0.11 TCGA-60-2719-01 8 71506818 71506818 T C TRAM1 Missense_Mutation p.M165V 0.32 tolerated(1) benign(0.007) TCGA-60-2719-01 8 82195650 82195650 T C FABP5 Silent p.C43C 0.51 TCGA-60-2719-01 8 88885116 88885116 C A DCAF4L2 Missense_Mutation p.D362Y 0.05 tolerated(0.12) benign(0.079) TCGA-60-2719-01 8 88885850 88885850 T A DCAF4L2 Missense_Mutation p.H117L 0.24 tolerated(0.58) benign(0.008) TCGA-60-2719-01 8 99440386 99440386 A G KCNS2 Missense_Mutation p.D60G 0.13 deleterious(0) probably_damaging(0.996) TCGA-60-2719-01 9 131110861 131110861 C T SLC27A4 Silent p.L198L 0.57 TCGA-60-2719-01 9 134393912 134393912 C T POMT1 Silent p.S473S 0.62 TCGA-60-2719-01 9 139651605 139651605 T CC LCN8 Frame_Shift_Ins p.R14Gfs*30 0.38 TCGA-60-2719-01 9 140880881 140880881 C T CACNA1B Missense_Mutation p.R596W 0.10 deleterious(0) possibly_damaging(0.748) TCGA-60-2719-01 9 37424897 37424897 C T GRHPR Nonsense_Mutation p.R47* 0.34 TCGA-60-2719-01 X 100402956 100402956 A T CENPI Missense_Mutation p.S634C 0.39 deleterious(0.01) possibly_damaging(0.497) TCGA-60-2719-01 X 100601333 100601333 A - TIMM8A 3'UTR 0.36 TCGA-60-2719-01 X 10182002 10182002 G A CLCN4 Missense_Mutation p.E620K 0.08 tolerated(0.17) benign(0.125) TCGA-60-2719-01 X 105277459 105277459 C A SERPINA7 3'UTR 0.44 TCGA-60-2719-01 X 105449901 105449901 A T MUM1L1 Missense_Mutation p.E159V 0.29 tolerated(0.1) benign(0.209) TCGA-60-2719-01 X 107316490 107316490 C A VSIG1 Silent p.T229T 0.28 TCGA-60-2719-01 X 11316790 11316790 A G AMELX Silent p.P103P 0.27 TCGA-60-2719-01 X 117032734 117032734 A G KLHL13 3'UTR 0.39 TCGA-60-2719-01 X 118124510 118124510 G A LONRF3 Missense_Mutation p.A468T 0.43 deleterious(0.01) possibly_damaging(0.544) TCGA-60-2719-01 X 118222607 118222607 A C KIAA1210 Silent p.T862T 0.32 TCGA-60-2719-01 X 118763348 118763348 G T SEPT6 Missense_Mutation p.L405M 0.46 tolerated(0.27) probably_damaging(0.99) TCGA-60-2719-01 X 129759168 129759168 G A ENOX2 3'UTR 0.25 TCGA-60-2719-01 X 129837178 129837178 T C ENOX2 Missense_Mutation p.M34V 0.25 tolerated(0.8) benign(0) TCGA-60-2719-01 X 130218282 130218282 C A ARHGAP36 Missense_Mutation p.Q217K 0.27 tolerated(1) benign(0.024) TCGA-60-2719-01 X 133906048 133906048 A G FAM122B 3'UTR 0.45 TCGA-60-2719-01 X 134427658 134427658 C T ZNF75D Missense_Mutation p.E137K 0.53 tolerated(0.62) benign(0.391) TCGA-60-2719-01 X 13651197 13651197 T G EGFL6 Missense_Mutation p.L550V 0.03 tolerated_low_confidence(0.11) benign(0.057) TCGA-60-2719-01 X 140335859 140335859 G T SPANXC Missense_Mutation p.P29T 0.25 deleterious(0.04) benign(0.112) TCGA-60-2719-01 X 140995644 140995644 C A MAGEC1 Silent p.P818P 0.43 TCGA-60-2719-01 X 149638838 149638838 G T MAMLD1 Silent p.L306L 0.31 TCGA-60-2719-01 X 149895709 149895709 C A MTMR1 Nonsense_Mutation p.C117* 0.41 TCGA-60-2719-01 X 151821678 151821678 C A GABRQ Silent p.S611S 0.47 TCGA-60-2719-01 X 153059811 153059811 G T IDH3G 5'UTR 0.27 TCGA-60-2719-01 X 153577267 153577267 A T FLNA Missense_Mutation p.W2632R 0.48 deleterious(0) probably_damaging(1) TCGA-60-2719-01 X 15364060 15364060 C A FIGF 3'UTR 0.27 TCGA-60-2719-01 X 154009998 154009998 G T MPP1 Missense_Mutation p.N342K 0.43 deleterious(0.01) possibly_damaging(0.736) TCGA-60-2719-01 X 1718223 1718223 G T AKAP17A Missense_Mutation p.K350N 0.32 tolerated(0.06) unknown(0) TCGA-60-2719-01 X 22245715 22245715 T C PHEX Missense_Mutation p.L686P 0.41 deleterious(0) possibly_damaging(0.87) TCGA-60-2719-01 X 24483633 24483633 C T PDK3 Missense_Mutation p.R21C 0.36 tolerated(0.06) benign(0.005) TCGA-60-2719-01 X 37663354 37663354 G T CYBB Missense_Mutation p.Q374H 0.34 tolerated(0.08) possibly_damaging(0.489) TCGA-60-2719-01 X 37969625 37969625 T A SYTL5 Missense_Mutation p.W518R 0.47 deleterious(0) probably_damaging(1) TCGA-60-2719-01 X 48372703 48372703 G T PORCN Silent p.T265T 0.47 TCGA-60-2719-01 X 48418069 48418069 T A TBC1D25 Missense_Mutation p.M258K 0.39 deleterious(0) probably_damaging(0.985) TCGA-60-2719-01 X 49074999 49074999 G A CACNA1F Missense_Mutation p.S959F 0.21 deleterious(0) possibly_damaging(0.682) TCGA-60-2719-01 X 50350766 50350767 - TGCTGCTGCTGT SHROOM4 In_Frame_Ins p.Q1125_Q1126insTAAA 0.12 TCGA-60-2719-01 X 54020150 54020150 C G PHF8 Missense_Mutation p.A540P 0.42 tolerated(0.21) benign(0.005) TCGA-60-2719-01 X 54161493 54161493 C G FAM120C Missense_Mutation p.G463R 0.45 tolerated(0.07) benign(0.132) TCGA-60-2719-01 X 55479577 55479577 T A MAGEH1 3'UTR 0.69 TCGA-60-2719-01 X 64721936 64721936 T C ZC3H12B Missense_Mutation p.I453T 0.51 tolerated(1) benign(0.05) TCGA-60-2719-01 X 7811224 7811224 C A VCX 5'UTR 0.46 TCGA-60-2719-01 X 92927456 92927456 C A NAP1L3 Missense_Mutation p.R283I 0.46 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-60-2719-01 X 96724836 96724836 T G DIAPH2 Intron 0.44 TCGA-60-2719-01 X 9728759 9728759 C G GPR143 Missense_Mutation p.A120P 0.24 deleterious(0) probably_damaging(0.948) TCGA-60-2720-01 10 101591877 101591877 A T ABCC2 Missense_Mutation p.R1083W 0.21 deleterious(0) probably_damaging(1) TCGA-60-2720-01 10 101835705 101835705 G A CPN1 Missense_Mutation p.S128F 0.18 deleterious(0) probably_damaging(1) TCGA-60-2720-01 10 103898521 103898521 C G PPRC1 Missense_Mutation p.S163C 0.12 deleterious(0) probably_damaging(0.995) TCGA-60-2720-01 10 103987391 103987391 C G ELOVL3 Nonsense_Mutation p.S37* 0.09 TCGA-60-2720-01 10 103987488 103987488 C G ELOVL3 Silent p.L69L 0.11 TCGA-60-2720-01 10 105037298 105037298 G A INA Silent p.E110E 0.20 TCGA-60-2720-01 10 124402788 124402788 C A DMBT1 Silent p.S2372S 0.18 TCGA-60-2720-01 10 126631520 126631520 G A ZRANB1 Nonsense_Mutation p.W153* 0.23 TCGA-60-2720-01 10 43016066 43016066 C A ZNF37BP RNA 0.15 TCGA-60-2720-01 10 48413671 48413671 G T GDF2 Missense_Mutation p.S399R 0.10 deleterious(0) possibly_damaging(0.821) TCGA-60-2720-01 10 48414499 48414499 T G GDF2 Silent p.T123T 0.12 TCGA-60-2720-01 10 52008313 52008313 T A ASAH2 Missense_Mutation p.M20L 0.12 tolerated_low_confidence(0.05) benign(0.098) TCGA-60-2720-01 10 55782810 55782810 C A PCDH15 Missense_Mutation p.V790L 0.13 tolerated(0.3) benign(0.14) TCGA-60-2720-01 10 60154868 60154868 G A TFAM 3'UTR 0.16 TCGA-60-2720-01 10 64415325 64415325 G T ZNF365 Intron 0.19 TCGA-60-2720-01 10 75519797 75519797 C T SEC24C Missense_Mutation p.S168L 0.18 tolerated(0.15) benign(0.114) TCGA-60-2720-01 10 94837069 94837069 G C CYP26A1 3'UTR 0.13 TCGA-60-2720-01 10 95326724 95326724 T G FFAR4 Missense_Mutation p.C83G 0.21 deleterious(0) probably_damaging(0.985) TCGA-60-2720-01 11 10514974 10514974 G C AMPD3 Missense_Mutation p.E349Q 0.19 tolerated(0.13) possibly_damaging(0.829) TCGA-60-2720-01 11 110102423 110102423 C T RDX Intron 0.09 TCGA-60-2720-01 11 116649706 116649706 C T ZNF259 Missense_Mutation p.E439K 0.11 deleterious(0) probably_damaging(0.926) TCGA-60-2720-01 11 119216246 119216246 C A MFRP Missense_Mutation p.Q175H 0.12 deleterious(0.01) probably_damaging(0.963) TCGA-60-2720-01 11 123901169 123901169 C A OR10G8 Silent p.P280P 0.14 TCGA-60-2720-01 11 125237798 125237798 C A PKNOX2 Silent p.P48P 0.14 TCGA-60-2720-01 11 17741680 17741680 C A MYOD1 Silent p.R117R 0.32 TCGA-60-2720-01 11 21592335 21592335 C G NELL1 Missense_Mutation p.T669R 0.16 tolerated(0.91) benign(0.008) TCGA-60-2720-01 11 26656601 26656601 G T ANO3 Missense_Mutation p.R676L 0.13 tolerated(0.07) probably_damaging(0.98) TCGA-60-2720-01 11 26677983 26677983 C A ANO3 Nonsense_Mutation p.Y906* 0.17 TCGA-60-2720-01 11 31284588 31284588 C T DCDC1 3'UTR 0.20 TCGA-60-2720-01 11 31329246 31329246 G A DCDC1 Missense_Mutation p.S125F 0.13 tolerated(0.2) benign(0.302) TCGA-60-2720-01 11 49168478 49168478 T C FOLH1 Missense_Mutation p.S695G 0.35 deleterious(0) possibly_damaging(0.889) TCGA-60-2720-01 11 49178328 49178328 C G FOLH1 Missense_Mutation p.E522Q 0.13 tolerated(0.06) probably_damaging(0.972) TCGA-60-2720-01 11 49831462 49831462 G C RP11-707M1.1 RNA 0.24 TCGA-60-2720-01 11 5291102 5291102 C T HBE1 Missense_Mutation p.E7K 0.13 tolerated(0.12) probably_damaging(0.957) TCGA-60-2720-01 11 55110699 55110699 C G OR4A16 Missense_Mutation p.T8R 0.12 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-60-2720-01 11 55659132 55659132 C T TRIM51 3'UTR 0.14 TCGA-60-2720-01 11 55861587 55861587 C A OR8I2 Silent p.T268T 0.13 TCGA-60-2720-01 11 56057843 56057843 T C OR8H1 Silent p.G232G 0.11 TCGA-60-2720-01 11 57069961 57069961 G A TNKS1BP1 Missense_Mutation p.S1552F 0.20 tolerated(0.18) benign(0.382) TCGA-60-2720-01 11 5905882 5905882 G T OR52E4 Missense_Mutation p.M120I 0.21 deleterious(0.01) probably_damaging(0.989) TCGA-60-2720-01 11 59283162 59283162 C A OR4D9 Silent p.A259A 0.10 TCGA-60-2720-01 11 62747414 62747414 G T SLC22A6 Silent p.A348A 0.12 TCGA-60-2720-01 11 6622567 6622567 T A RRP8 Silent p.A243A 0.20 TCGA-60-2720-01 11 67800460 67800460 G T NDUFS8 Silent p.L60L 0.12 TCGA-60-2720-01 11 72316271 72316271 C T PDE2A Splice_Site p.X79_splice 0.19 TCGA-60-2720-01 11 76062339 76062339 T A PRKRIR Missense_Mutation p.T619S 0.13 tolerated(0.07) benign(0.199) TCGA-60-2720-01 12 104106206 104106206 G A STAB2 Missense_Mutation p.G1466R 0.16 deleterious(0) possibly_damaging(0.657) TCGA-60-2720-01 12 105543402 105543402 A T KIAA1033 Missense_Mutation p.T842S 0.09 deleterious(0.02) possibly_damaging(0.49) TCGA-60-2720-01 12 112229892 112229892 G A ALDH2 Missense_Mutation p.G275R 0.13 deleterious(0) probably_damaging(0.967) TCGA-60-2720-01 12 122181597 122181597 C T TMEM120B Silent p.S44S 0.11 TCGA-60-2720-01 12 123200969 123200969 T A HCAR3 Missense_Mutation p.M106L 0.10 tolerated(0.2) probably_damaging(0.99) TCGA-60-2720-01 12 130840128 130840128 C A PIWIL1 Missense_Mutation p.D440E 0.11 tolerated(1) benign(0.004) TCGA-60-2720-01 12 131311740 131311740 G A STX2 Nonsense_Mutation p.Q35* 0.08 TCGA-60-2720-01 12 13526086 13526086 G C C12orf36 3'UTR 0.17 TCGA-60-2720-01 12 14993526 14993526 C T ART4 Missense_Mutation p.V236I 0.14 tolerated(0.53) benign(0.06) TCGA-60-2720-01 12 21068990 21068990 T C SLCO1B3 Missense_Mutation p.Y640H 0.15 tolerated(0.46) benign(0.009) TCGA-60-2720-01 12 29725064 29725064 C A TMTC1 Silent p.A502A 0.12 TCGA-60-2720-01 12 43821158 43821158 A T ADAMTS20 Missense_Mutation p.C1354S 0.16 deleterious(0) probably_damaging(1) TCGA-60-2720-01 12 48440158 48440158 C G SENP1 Missense_Mutation p.R618T 0.16 deleterious(0) possibly_damaging(0.568) TCGA-60-2720-01 12 49231121 49231121 C G DDX23 Missense_Mutation p.R270P 0.08 deleterious(0) probably_damaging(0.963) TCGA-60-2720-01 12 49460814 49460814 G C RHEBL1 Nonsense_Mutation p.Y43* 0.15 TCGA-60-2720-01 12 54348956 54348956 C T HOXC12 Silent p.R81R 0.21 TCGA-60-2720-01 12 54348957 54348957 A T HOXC12 Missense_Mutation p.T82S 0.21 tolerated(1) benign(0.003) TCGA-60-2720-01 12 55026117 55026117 G T LACRT Missense_Mutation p.P54Q 0.09 tolerated_low_confidence(0.91) possibly_damaging(0.904) TCGA-60-2720-01 12 55715190 55715190 C A OR6C1 Missense_Mutation p.S269R 0.10 deleterious_low_confidence(0.01) benign(0.049) TCGA-60-2720-01 12 56426419 56426419 G C IKZF4 Missense_Mutation p.E264Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-60-2720-01 12 57573625 57573625 G A LRP1 Missense_Mutation p.S1676N 0.15 probably_damaging(0.993) TCGA-60-2720-01 12 57630929 57630929 C T NDUFA4L2 5'UTR 0.18 TCGA-60-2720-01 12 68646350 68646350 C A IL22 Missense_Mutation p.R110S 0.16 tolerated(0.17) benign(0.114) TCGA-60-2720-01 12 78516094 78516094 C A NAV3 Missense_Mutation p.S1375Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-60-2720-01 12 81777827 81777827 G C PPFIA2 Missense_Mutation p.T320S 0.12 tolerated(1) benign(0.001) TCGA-60-2720-01 12 8630110 8630110 C T CLEC6A 3'UTR 0.36 TCGA-60-2720-01 12 863029 863029 C G WNK1 Missense_Mutation p.L100V 0.21 tolerated(0.93) unknown(0) TCGA-60-2720-01 13 103301254 103301254 C T TPP2 Intron 0.14 TCGA-60-2720-01 13 41524010 41524010 T A ELF1 Missense_Mutation p.Q154L 0.15 tolerated(0.25) benign(0.056) TCGA-60-2720-01 13 84454819 84454819 G C SLITRK1 Missense_Mutation p.P275R 0.19 tolerated(0.1) possibly_damaging(0.814) TCGA-60-2720-01 14 101364329 101364329 C G AL117190.3 3'Flank 0.18 TCGA-60-2720-01 14 20482746 20482746 C A OR4K14 Missense_Mutation p.D203Y 0.13 deleterious(0.04) probably_damaging(0.927) TCGA-60-2720-01 14 22038006 22038006 A G OR10G3 Silent p.T290T 0.16 TCGA-60-2720-01 14 23398450 23398450 C A PRMT5 Intron 0.14 TCGA-60-2720-01 14 23562722 23562722 G C ACIN1 Nonsense_Mutation p.S115* 0.11 TCGA-60-2720-01 14 69256636 69256636 C A ZFP36L1 Missense_Mutation p.A211S 0.12 tolerated(0.79) benign(0.066) TCGA-60-2720-01 14 86088661 86088661 C T FLRT2 Missense_Mutation p.P268L 0.22 deleterious(0) probably_damaging(0.955) TCGA-60-2720-01 14 91792395 91792395 C T CCDC88C Silent p.L352L 0.22 TCGA-60-2720-01 14 94088420 94088420 C T UNC79 Missense_Mutation p.S1437L 0.19 deleterious_low_confidence(0.04) benign(0.392) TCGA-60-2720-01 15 28419668 28419668 C G HERC2 Missense_Mutation p.K3310N 0.14 possibly_damaging(0.878) TCGA-60-2720-01 15 43873276 43873276 A C PPIP5K1 Missense_Mutation p.F329V 0.16 deleterious(0) possibly_damaging(0.468) TCGA-60-2720-01 15 43922915 43922915 T G CATSPER2 Missense_Mutation p.N526T 0.13 deleterious(0) benign(0.421) TCGA-60-2720-01 15 52356574 52356574 G A MAPK6 Missense_Mutation p.A515T 0.06 tolerated_low_confidence(0.4) benign(0.001) TCGA-60-2720-01 15 54305124 54305124 C A UNC13C Missense_Mutation p.S8R 0.14 deleterious_low_confidence(0) benign(0.194) TCGA-60-2720-01 15 58302913 58302913 C T ALDH1A2 Missense_Mutation p.V143I 0.20 tolerated(0.19) benign(0.004) TCGA-60-2720-01 15 59516905 59516905 C A MYO1E Nonsense_Mutation p.E254* 0.20 TCGA-60-2720-01 15 69238497 69238497 A T SPESP1 Silent p.I208I 0.21 TCGA-60-2720-01 15 73616009 73616009 G C HCN4 Missense_Mutation p.P809A 0.28 tolerated(0.07) unknown(0) TCGA-60-2720-01 15 75982045 75982045 G C CSPG4 Missense_Mutation p.P454R 0.11 deleterious(0) probably_damaging(1) TCGA-60-2720-01 15 78454661 78454661 G T IDH3A Missense_Mutation p.R188L 0.15 tolerated(0.06) benign(0.048) TCGA-60-2720-01 15 91027569 91027569 C T IQGAP1 Silent p.I1302I 0.13 TCGA-60-2720-01 16 11272305 11272305 G T CLEC16A Missense_Mutation p.V974L 0.16 tolerated_low_confidence(0.62) benign(0.002) TCGA-60-2720-01 16 15797886 15797886 G C MYH11 Missense_Mutation p.R1968G 0.22 benign(0.039) TCGA-60-2720-01 16 30736362 30736362 C G SRCAP Missense_Mutation p.R1873G 0.14 probably_damaging(0.931) TCGA-60-2720-01 16 31485212 31485212 C T TGFB1I1 Missense_Mutation p.S80F 0.05 tolerated(0.15) benign(0.039) TCGA-60-2720-01 16 3340703 3340703 C G ZNF263 3'UTR 0.33 TCGA-60-2720-01 16 3576429 3576429 C T CLUAP1 Silent p.L291L 0.11 TCGA-60-2720-01 16 49433113 49433113 A T C16orf78 Missense_Mutation p.D241V 0.17 deleterious(0) probably_damaging(0.989) TCGA-60-2720-01 16 66642254 66642254 G A CMTM3 Missense_Mutation p.A64T 0.15 tolerated(0.06) possibly_damaging(0.553) TCGA-60-2720-01 16 66944338 66944338 G T CDH16 Silent p.A664A 0.23 TCGA-60-2720-01 16 67432782 67432782 T A ZDHHC1 Missense_Mutation p.Y199F 0.28 tolerated(0.07) benign(0.021) TCGA-60-2720-01 16 75646552 75646552 C A ADAT1 Missense_Mutation p.G211V 0.15 tolerated(0.15) benign(0.322) TCGA-60-2720-01 16 79245607 79245607 G A WWOX Missense_Mutation p.E387K 0.23 tolerated(0.87) benign(0.01) TCGA-60-2720-01 16 81190635 81190635 G A PKD1L2 RNA 0.30 TCGA-60-2720-01 17 10354133 10354133 C G MYH4 Missense_Mutation p.Q1315H 0.15 deleterious(0.01) probably_damaging(0.971) TCGA-60-2720-01 17 10404771 10404771 A C MYH1 Missense_Mutation p.S1132A 0.11 tolerated(1) benign(0.003) TCGA-60-2720-01 17 26967595 26967595 G C KIAA0100 Silent p.S291S 0.16 TCGA-60-2720-01 17 29509539 29509539 G C NF1 Missense_Mutation p.K248N 0.05 tolerated(0.14) benign(0.157) TCGA-60-2720-01 17 30533963 30533963 A C RHOT1 Missense_Mutation p.E484A 0.19 tolerated(0.7) benign(0.002) TCGA-60-2720-01 17 39726126 39726126 C G KRT9 Missense_Mutation p.K289N 0.18 deleterious(0.01) benign(0.299) TCGA-60-2720-01 17 41052951 41052951 C T G6PC Nonsense_Mutation p.Q20* 0.17 TCGA-60-2720-01 17 51901872 51901872 C T KIF2B Missense_Mutation p.P493L 0.16 deleterious(0) probably_damaging(1) TCGA-60-2720-01 17 59489271 59489271 C T C17orf82 5'UTR 0.16 TCGA-60-2720-01 17 65163814 65163814 C - HELZ Frame_Shift_Del p.R510Pfs*18 0.12 TCGA-60-2720-01 17 7130726 7130726 G A DVL2 Silent p.L454L 0.19 TCGA-60-2720-01 17 72245212 72245212 C T TTYH2 Silent p.I289I 0.22 TCGA-60-2720-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.22 deleterious(0) probably_damaging(1) TCGA-60-2720-01 17 8093017 8093017 C T C17orf59 Missense_Mutation p.E148K 0.14 tolerated_low_confidence(0.05) benign(0.188) TCGA-60-2720-01 18 12546836 12546836 C G SPIRE1 Missense_Mutation p.R147T 0.08 deleterious(0) probably_damaging(0.93) TCGA-60-2720-01 18 13113642 13113642 G C CEP192 Missense_Mutation p.E2369Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-60-2720-01 18 29867683 29867683 G A GAREM Missense_Mutation p.L293F 0.18 deleterious(0.05) benign(0.11) TCGA-60-2720-01 18 39637940 39637940 G T PIK3C3 Missense_Mutation p.G786V 0.15 deleterious(0) possibly_damaging(0.794) TCGA-60-2720-01 18 5423483 5423483 C A EPB41L3 Missense_Mutation p.R411S 0.10 deleterious(0) probably_damaging(1) TCGA-60-2720-01 18 54423947 54423947 C T WDR7 Missense_Mutation p.S708F 0.10 deleterious(0.01) benign(0.309) TCGA-60-2720-01 18 56247398 56247398 C T ALPK2 Missense_Mutation p.D204N 0.04 tolerated(0.25) benign(0.007) TCGA-60-2720-01 18 77134017 77134017 A - ATP9B Frame_Shift_Del p.T1064Rfs*5 0.12 TCGA-60-2720-01 18 77895595 77895596 - T ADNP2 Frame_Shift_Ins p.M767Ifs*15 0.11 TCGA-60-2720-01 18 9254883 9254883 A T ANKRD12 Missense_Mutation p.T540S 0.08 tolerated_low_confidence(0.28) benign(0.005) TCGA-60-2720-01 19 12541212 12541212 G A ZNF443 Nonsense_Mutation p.Q592* 0.18 TCGA-60-2720-01 19 14952021 14952021 G A OR7A10 Silent p.S223S 0.10 TCGA-60-2720-01 19 37644315 37644315 T A ZNF585A Missense_Mutation p.E107D 0.11 tolerated(0.26) benign(0.001) TCGA-60-2720-01 19 37733871 37733871 C G ZNF383 Missense_Mutation p.Q245E 0.20 tolerated(0.07) probably_damaging(0.97) TCGA-60-2720-01 19 38985056 38985056 C A RYR1 Missense_Mutation p.S2113R 0.18 benign(0.041) TCGA-60-2720-01 19 39398189 39398189 C G NFKBIB Missense_Mutation p.P287A 0.17 tolerated(0.36) benign(0.009) TCGA-60-2720-01 19 46205165 46205165 C G QPCTL Silent p.L332L 0.12 TCGA-60-2720-01 19 46206205 46206205 C G QPCTL Silent p.V349V 0.16 TCGA-60-2720-01 19 46388288 46388288 C A IRF2BP1 Missense_Mutation p.D249Y 0.20 deleterious(0) probably_damaging(0.953) TCGA-60-2720-01 19 49654551 49654551 G T HRC 3'UTR 0.30 TCGA-60-2720-01 19 50097967 50097967 A T PRR12 Silent p.P125P 0.23 TCGA-60-2720-01 19 50827098 50827098 G C KCNC3 Missense_Mutation p.P371R 0.15 deleterious(0) probably_damaging(1) TCGA-60-2720-01 19 52395145 52395145 C G ZNF649 Missense_Mutation p.E82Q 0.13 tolerated(0.63) benign(0.021) TCGA-60-2720-01 19 5243974 5243974 G A PTPRS Missense_Mutation p.A503V 0.26 deleterious(0) probably_damaging(0.996) TCGA-60-2720-01 19 52568506 52568506 A - ZNF841 Frame_Shift_Del p.Y877Ifs*21 0.12 TCGA-60-2720-01 19 52627196 52627196 T C ZNF616 Missense_Mutation p.Y40C 0.15 deleterious(0.03) probably_damaging(0.998) TCGA-60-2720-01 19 53269954 53269954 T A ZNF600 Missense_Mutation p.H352L 0.14 deleterious(0) probably_damaging(0.99) TCGA-60-2720-01 19 53669219 53669219 C T ZNF665 Missense_Mutation p.G175E 0.14 tolerated(1) benign(0.013) TCGA-60-2720-01 19 54782843 54782843 C T LILRB2 Missense_Mutation p.G260E 0.21 deleterious(0.03) probably_damaging(0.958) TCGA-60-2720-01 19 55253692 55253692 G A KIR2DL3 Missense_Mutation p.A113T 0.10 tolerated(0.08) possibly_damaging(0.885) TCGA-60-2720-01 19 56223865 56223865 G C NLRP9 Missense_Mutation p.H865D 0.10 tolerated(0.42) benign(0.007) TCGA-60-2720-01 19 56487670 56487670 G C NLRP8 Splice_Site p.X959_splice 0.15 TCGA-60-2720-01 19 57036767 57036767 C T ZNF471 Missense_Mutation p.A444V 0.05 deleterious(0.01) probably_damaging(0.955) TCGA-60-2720-01 19 5785396 5785396 G C CTB-54O9.9 Missense_Mutation p.I48M 0.29 deleterious(0) benign(0.3) TCGA-60-2720-01 19 58419725 58419725 T C ZNF417 3'UTR 0.40 TCGA-60-2720-01 19 9006672 9006672 G C MUC16 Missense_Mutation p.F13192L 0.16 probably_damaging(0.998) TCGA-60-2720-01 19 9033667 9033667 G A MUC16 Silent p.D12090D 0.17 TCGA-60-2720-01 19 9083649 9083649 G T MUC16 Silent p.L2722L 0.14 TCGA-60-2720-01 1 103343604 103343604 C T COL11A1 Missense_Mutation p.E1798K 0.13 unknown(0) TCGA-60-2720-01 1 103488453 103488453 C T COL11A1 Missense_Mutation p.E364K 0.12 possibly_damaging(0.514) TCGA-60-2720-01 1 107600266 107600266 C T PRMT6 Missense_Mutation p.S310L 0.10 deleterious(0) possibly_damaging(0.467) TCGA-60-2720-01 1 11151198 11151198 G C EXOSC10 Missense_Mutation p.F172L 0.14 deleterious(0.01) possibly_damaging(0.701) TCGA-60-2720-01 1 112246973 112246973 G A RAP1A Missense_Mutation p.M111I 0.15 tolerated(0.66) benign(0.415) TCGA-60-2720-01 1 117631574 117631574 A G TTF2 Missense_Mutation p.N771S 0.13 deleterious(0) probably_damaging(1) TCGA-60-2720-01 1 119427312 119427312 G A TBX15 3'UTR 0.12 TCGA-60-2720-01 1 119962195 119962195 C T HSD3B2 Silent p.V99V 0.22 TCGA-60-2720-01 1 143912250 143912250 G C FAM72D Missense_Mutation p.L16V 0.06 tolerated(0.09) probably_damaging(0.97) TCGA-60-2720-01 1 151020396 151020396 G A C1orf56 Missense_Mutation p.G25S 0.17 tolerated(0.07) probably_damaging(0.97) TCGA-60-2720-01 1 152057964 152057964 G - TCHHL1 Frame_Shift_Del p.L732Sfs*11 0.12 TCGA-60-2720-01 1 152127601 152127601 G T RPTN Missense_Mutation p.H658Q 0.12 deleterious(0.05) possibly_damaging(0.548) TCGA-60-2720-01 1 154574268 154574268 T C ADAR Missense_Mutation p.T284A 0.15 tolerated(0.33) benign(0.001) TCGA-60-2720-01 1 155408743 155408743 C G ASH1L Missense_Mutation p.D1735H 0.06 tolerated_low_confidence(0.07) benign(0.426) TCGA-60-2720-01 1 156641556 156641556 C G NES Missense_Mutation p.K808N 0.14 tolerated(0.12) benign(0.02) TCGA-60-2720-01 1 156693248 156693248 T C ISG20L2 Missense_Mutation p.K319E 0.12 tolerated(0.09) benign(0.257) TCGA-60-2720-01 1 157739794 157739794 C A FCRL2 Missense_Mutation p.G153W 0.15 tolerated(0.05) benign(0.345) TCGA-60-2720-01 1 158615169 158615169 G C SPTA1 Missense_Mutation p.R1335G 0.13 deleterious(0) possibly_damaging(0.508) TCGA-60-2720-01 1 166974348 166974348 G A MAEL Silent p.K228K 0.12 TCGA-60-2720-01 1 171509532 171509532 G T PRRC2C Missense_Mutation p.R974L 0.10 unknown(0) TCGA-60-2720-01 1 175355197 175355198 - A TNR Frame_Shift_Ins p.S583Mfs*29 0.17 TCGA-60-2720-01 1 176659322 176659322 C A PAPPA2 Missense_Mutation p.D729E 0.13 deleterious(0) benign(0.012) TCGA-60-2720-01 1 177250107 177250107 G A BRINP2 Missense_Mutation p.E599K 0.08 deleterious(0) probably_damaging(0.985) TCGA-60-2720-01 1 181548209 181548209 C G CACNA1E Missense_Mutation p.S206R 0.06 deleterious(0) possibly_damaging(0.765) TCGA-60-2720-01 1 193038376 193038376 G T TROVE2 Missense_Mutation p.L64F 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-60-2720-01 1 196712697 196712697 G T CFH Missense_Mutation p.M1083I 0.08 tolerated(0.13) benign(0.005) TCGA-60-2720-01 1 196881977 196881977 G T CFHR4 Missense_Mutation p.A368S 0.13 tolerated(0.5) benign(0.398) TCGA-60-2720-01 1 206651597 206651597 A T IKBKE Missense_Mutation p.S303C 0.13 deleterious(0) probably_damaging(0.95) TCGA-60-2720-01 1 207143604 207143604 C A FCAMR 5'UTR 0.37 TCGA-60-2720-01 1 210329086 210329086 C A SYT14 Missense_Mutation p.S440R 0.19 deleterious(0.01) possibly_damaging(0.863) TCGA-60-2720-01 1 211093411 211093411 C A KCNH1 Missense_Mutation p.G345C 0.17 deleterious(0) probably_damaging(0.96) TCGA-60-2720-01 1 220184343 220184343 G A EPRS Missense_Mutation p.P517L 0.09 tolerated(0.2) benign(0.012) TCGA-60-2720-01 1 222712020 222712020 C T HHIPL2 Missense_Mutation p.G516D 0.10 deleterious(0) probably_damaging(0.999) TCGA-60-2720-01 1 224918248 224918248 G C CNIH3 Missense_Mutation p.V95L 0.38 tolerated(0.48) benign(0.002) TCGA-60-2720-01 1 229568794 229568794 G A ACTA1 Silent p.F23F 0.20 TCGA-60-2720-01 1 237870313 237870313 G T RYR2 Missense_Mutation p.M3215I 0.13 benign(0.004) TCGA-60-2720-01 1 237870314 237870314 G T RYR2 Nonsense_Mutation p.E3216* 0.13 TCGA-60-2720-01 1 240071750 240071750 C G CHRM3 Missense_Mutation p.S333R 0.10 deleterious(0.03) benign(0.345) TCGA-60-2720-01 1 241724047 241724047 G A KMO Silent p.V148V 0.07 TCGA-60-2720-01 1 24400709 24400709 G C MYOM3 Nonsense_Mutation p.S970* 0.19 TCGA-60-2720-01 1 247025290 247025290 C G AHCTF1 Missense_Mutation p.E1245Q 0.06 deleterious(0.02) probably_damaging(0.928) TCGA-60-2720-01 1 247587858 247587858 G T NLRP3 Silent p.L371L 0.11 TCGA-60-2720-01 1 247921402 247921402 A G OR1C1 Missense_Mutation p.F103L 0.08 deleterious(0.01) probably_damaging(0.935) TCGA-60-2720-01 1 247978248 247978248 C G OR14A16 Missense_Mutation p.E262Q 0.04 tolerated(0.4) benign(0.063) TCGA-60-2720-01 1 248058999 248058999 G T OR2W3 Silent p.L37L 0.14 TCGA-60-2720-01 1 248487405 248487405 C T OR2M7 Missense_Mutation p.G156R 0.06 deleterious(0.03) benign(0.229) TCGA-60-2720-01 1 248569970 248569970 C A OR2T1 Missense_Mutation p.N225K 0.16 deleterious(0.01) possibly_damaging(0.85) TCGA-60-2720-01 1 25715488 25715488 G A RHCE Silent p.I306I 0.15 TCGA-60-2720-01 1 27099425 27099425 T C ARID1A Missense_Mutation p.M1221T 0.10 unknown(0) TCGA-60-2720-01 1 41976541 41976541 C G HIVEP3 Missense_Mutation p.E2268Q 0.15 probably_damaging(0.995) TCGA-60-2720-01 1 45307547 45307547 C G PTCH2 Missense_Mutation p.E79D 0.14 deleterious(0.01) possibly_damaging(0.901) TCGA-60-2720-01 1 47685304 47685304 C A TAL1 3'UTR 0.20 TCGA-60-2720-01 1 55207145 55207145 A C TTC4 Missense_Mutation p.K375Q 0.16 tolerated(0.06) benign(0.061) TCGA-60-2720-01 1 55464892 55464892 C T BSND Silent p.F11F 0.07 TCGA-60-2720-01 1 55518445 55518445 G T PCSK9 Silent p.T260T 0.13 TCGA-60-2720-01 1 6196612 6196612 G A CHD5 Silent p.F887F 0.05 TCGA-60-2720-01 1 63090929 63090929 C A DOCK7 Splice_Site p.X475_splice 0.13 TCGA-60-2720-01 1 67208831 67208831 G C SGIP1 3'UTR 0.14 TCGA-60-2720-01 1 70257790 70257790 C A LRRC7 Missense_Mutation p.P85Q 0.10 deleterious(0) probably_damaging(0.986) TCGA-60-2720-01 1 71513140 71513140 G C PTGER3 Missense_Mutation p.P41A 0.14 tolerated(0.46) benign(0.001) TCGA-60-2720-01 1 75693535 75693535 C T SLC44A5 Nonsense_Mutation p.W287* 0.14 TCGA-60-2720-01 1 76398060 76398060 G A ASB17 5'UTR 0.08 TCGA-60-2720-01 1 82409190 82409190 C T LPHN2 Missense_Mutation p.S312L 0.07 deleterious(0) probably_damaging(0.954) TCGA-60-2720-01 1 89430565 89430565 C T CCBL2 Missense_Mutation p.A134T 0.13 deleterious(0) probably_damaging(0.949) TCGA-60-2720-01 1 9017275 9017275 C A CA6 Missense_Mutation p.H113Q 0.17 deleterious(0) probably_damaging(0.971) TCGA-60-2720-01 1 92181880 92181880 G C TGFBR3 Missense_Mutation p.F593L 0.07 tolerated(0.06) probably_damaging(1) TCGA-60-2720-01 1 92846357 92846357 G A RPAP2 Missense_Mutation p.E589K 0.17 tolerated(0.19) benign(0.004) TCGA-60-2720-01 1 94640064 94640064 C G ARHGAP29 Missense_Mutation p.K1049N 0.08 deleterious(0.04) possibly_damaging(0.511) TCGA-60-2720-01 20 10639146 10639146 C A JAG1 Nonsense_Mutation p.E222* 0.21 TCGA-60-2720-01 20 18379240 18379240 G C DZANK1 Missense_Mutation p.S488C 0.19 tolerated(1) benign(0.023) TCGA-60-2720-01 20 2638797 2638797 G C NOP56 Missense_Mutation p.E548Q 0.28 deleterious_low_confidence(0.04) benign(0.403) TCGA-60-2720-01 20 31622639 31622639 G T BPIFB6 Nonsense_Mutation p.E125* 0.15 TCGA-60-2720-01 20 31825567 31825567 C A BPIFA1 Missense_Mutation p.T17N 0.11 deleterious(0.01) benign(0.19) TCGA-60-2720-01 20 3218260 3218260 A G SLC4A11 Intron 0.17 TCGA-60-2720-01 20 36954817 36954817 C A BPI Missense_Mutation p.L386I 0.11 tolerated(0.06) possibly_damaging(0.825) TCGA-60-2720-01 20 36975032 36975032 G C LBP Missense_Mutation p.G38A 0.13 deleterious(0) probably_damaging(1) TCGA-60-2720-01 20 40730766 40730766 C G PTPRT Missense_Mutation p.D1238H 0.11 deleterious(0) probably_damaging(0.999) TCGA-60-2720-01 20 56735872 56735872 G C C20orf85 Silent p.V136V 0.15 TCGA-60-2720-01 20 61143530 61143530 G T C20orf166 5'Flank 0.23 TCGA-60-2720-01 20 9459642 9459642 C A PLCB4 Missense_Mutation p.Q1191K 0.16 tolerated_low_confidence(0.12) benign(0.025) TCGA-60-2720-01 21 11039271 11039271 G T BAGE2 RNA 0.03 TCGA-60-2720-01 21 11098796 11098796 C A BAGE2 RNA 0.14 TCGA-60-2720-01 21 19629135 19629135 G T CHODL Missense_Mutation p.R130L 0.13 deleterious(0) probably_damaging(1) TCGA-60-2720-01 21 22881368 22881368 T A NCAM2 Silent p.A758A 0.13 TCGA-60-2720-01 21 38309503 38309503 G C HLCS Missense_Mutation p.S81C 0.08 tolerated(0.08) possibly_damaging(0.635) TCGA-60-2720-01 22 24034931 24034931 T C RGL4 Missense_Mutation p.L150P 0.16 tolerated(0.17) benign(0.011) TCGA-60-2720-01 22 26829924 26829924 C T ASPHD2 Missense_Mutation p.R115C 0.17 deleterious(0) probably_damaging(0.997) TCGA-60-2720-01 22 29745276 29745276 C A AP1B1 Silent p.A456A 0.17 TCGA-60-2720-01 22 29884889 29884889 C T NEFH Silent p.F420F 0.19 TCGA-60-2720-01 22 31661978 31661978 G C LIMK2 Missense_Mutation p.E280Q 0.11 tolerated(0.25) benign(0.333) TCGA-60-2720-01 22 35799254 35799254 G A MCM5 Missense_Mutation p.M74I 0.09 tolerated(0.52) benign(0.001) TCGA-60-2720-01 22 42522959 42522959 C T CYP2D6 Silent p.L403L 0.43 TCGA-60-2720-01 22 42523955 42523955 C T CYP2D6 Missense_Mutation p.D292N 0.13 tolerated(0.13) benign(0.008) TCGA-60-2720-01 22 42537655 42537655 C T NDUFA6-AS1 3'Flank 0.24 TCGA-60-2720-01 22 44696781 44696781 G A KIAA1644 Silent p.L15L 0.11 TCGA-60-2720-01 22 50217446 50217446 T A BRD1 Nonsense_Mutation p.K174* 0.10 TCGA-60-2720-01 22 51009322 51009322 C T CPT1B Missense_Mutation p.E676K 0.11 tolerated(0.29) benign(0.021) TCGA-60-2720-01 2 107021533 107021533 G C RGPD3 3'UTR 0.25 TCGA-60-2720-01 2 109369515 109369515 G T RANBP2 Missense_Mutation p.W606L 0.11 deleterious(0) benign(0.022) TCGA-60-2720-01 2 110373630 110373630 A G SOWAHC Missense_Mutation p.N522D 0.24 deleterious(0.02) probably_damaging(0.972) TCGA-60-2720-01 2 125555884 125555884 G T CNTNAP5 Silent p.L1067L 0.08 TCGA-60-2720-01 2 131520625 131520625 C A AMER3 Missense_Mutation p.P327Q 0.10 tolerated(0.07) probably_damaging(0.96) TCGA-60-2720-01 2 131897811 131897811 G T PLEKHB2 Silent p.G173G 0.10 TCGA-60-2720-01 2 141083359 141083359 A G LRP1B Silent p.N4104N 0.07 TCGA-60-2720-01 2 141201953 141201953 A G LRP1B Silent p.L3414L 0.13 TCGA-60-2720-01 2 1520679 1520679 C A TPO Missense_Mutation p.T848N 0.16 deleterious(0) benign(0.066) TCGA-60-2720-01 2 163292047 163292047 T A KCNH7 Missense_Mutation p.R539W 0.19 deleterious(0) probably_damaging(0.999) TCGA-60-2720-01 2 166183444 166183444 C G SCN2A Nonsense_Mutation p.S700* 0.14 TCGA-60-2720-01 2 166903458 166903458 A T SCN1A Missense_Mutation p.M400K 0.07 deleterious(0) probably_damaging(0.99) TCGA-60-2720-01 2 168099807 168099807 C G XIRP2 Missense_Mutation p.D635E 0.16 benign(0.002) TCGA-60-2720-01 2 168115003 168115003 G A XIRP2 3'UTR 0.10 TCGA-60-2720-01 2 170366466 170366466 G C KLHL41 Missense_Mutation p.E60Q 0.17 tolerated(0.12) probably_damaging(0.917) TCGA-60-2720-01 2 178545563 178545563 T C PDE11A Missense_Mutation p.D805G 0.13 tolerated(0.11) benign(0.31) TCGA-60-2720-01 2 179413051 179413051 G T TTN Missense_Mutation p.P31101H 0.18 TCGA-60-2720-01 2 179417146 179417146 G T TTN Missense_Mutation p.P30161T 0.14 TCGA-60-2720-01 2 179452497 179452497 A G TTN Missense_Mutation p.M21180T 0.10 TCGA-60-2720-01 2 179469016 179469016 G T TTN Missense_Mutation p.P18133H 0.07 TCGA-60-2720-01 2 179479391 179479391 C T TTN Missense_Mutation p.G16284R 0.17 TCGA-60-2720-01 2 179482119 179482119 C T TTN Missense_Mutation p.R15898Q 0.20 TCGA-60-2720-01 2 179596050 179596050 C T TTN Missense_Mutation p.A5815T 0.12 TCGA-60-2720-01 2 185801203 185801203 C A ZNF804A Silent p.S360S 0.10 TCGA-60-2720-01 2 189387534 189387534 G T GULP1 Missense_Mutation p.D48Y 0.13 deleterious(0) probably_damaging(0.942) TCGA-60-2720-01 2 189916171 189916171 C A COL5A2 Missense_Mutation p.G936W 0.12 unknown(0) TCGA-60-2720-01 2 198631324 198631324 G T BOLL Missense_Mutation p.R174S 0.12 tolerated(0.52) possibly_damaging(0.56) TCGA-60-2720-01 2 201501731 201501731 G C AOX1 Missense_Mutation p.G815A 0.20 tolerated(1) benign(0.047) TCGA-60-2720-01 2 20201770 20201770 G C MATN3 Missense_Mutation p.H330D 0.29 tolerated(0.2) possibly_damaging(0.886) TCGA-60-2720-01 2 202400915 202400915 C G ALS2CR11 Missense_Mutation p.L445F 0.17 tolerated(0.17) benign(0.007) TCGA-60-2720-01 2 210888922 210888922 A C KANSL1L Silent p.A856A 0.15 TCGA-60-2720-01 2 211473090 211473090 C T CPS1 Missense_Mutation p.P739L 0.09 deleterious(0) possibly_damaging(0.849) TCGA-60-2720-01 2 21228375 21228375 C T APOB Missense_Mutation p.V3789I 0.17 benign(0.029) TCGA-60-2720-01 2 219297587 219297587 T C VIL1 Silent p.N471N 0.22 TCGA-60-2720-01 2 228681066 228681066 C A CCL20 Missense_Mutation p.Q79K 0.12 tolerated(1) benign(0.002) TCGA-60-2720-01 2 230453205 230453205 C A DNER Splice_Site p.X196_splice 0.17 TCGA-60-2720-01 2 235950606 235950606 C G SH3BP4 Nonsense_Mutation p.S398* 0.08 TCGA-60-2720-01 2 241515974 241515974 C G RNPEPL1 Silent p.L280L 0.17 TCGA-60-2720-01 2 27157544 27157544 G A DPYSL5 Missense_Mutation p.V297M 0.15 deleterious(0) possibly_damaging(0.776) TCGA-60-2720-01 2 32823032 32823032 G C BIRC6 Missense_Mutation p.M4609I 0.08 probably_damaging(0.982) TCGA-60-2720-01 2 33246033 33246033 T C LTBP1 Missense_Mutation p.V208A 0.17 tolerated(0.06) benign(0.288) TCGA-60-2720-01 2 39250320 39250320 G C SOS1 Missense_Mutation p.L417V 0.18 tolerated(0.22) benign(0.015) TCGA-60-2720-01 2 40656111 40656111 G T SLC8A1 Missense_Mutation p.T437N 0.15 tolerated(1) benign(0.001) TCGA-60-2720-01 2 44021646 44021646 G T DYNC2LI1 Missense_Mutation p.W124L 0.06 deleterious(0) possibly_damaging(0.836) TCGA-60-2720-01 2 44021647 44021647 G C DYNC2LI1 Missense_Mutation p.W124C 0.06 deleterious(0) probably_damaging(0.967) TCGA-60-2720-01 2 45235921 45235921 C A SIX2 Missense_Mutation p.R110L 0.14 deleterious(0) probably_damaging(0.997) TCGA-60-2720-01 2 50724617 50724617 G A NRXN1 Silent p.T951T 0.15 TCGA-60-2720-01 2 55562301 55562301 C G CCDC88A Splice_Site p.X553_splice 0.17 TCGA-60-2720-01 2 61575411 61575411 C T USP34 Missense_Mutation p.D627N 0.13 deleterious_low_confidence(0.05) benign(0.01) TCGA-60-2720-01 2 69049822 69049822 C T ARHGAP25 Silent p.A517A 0.09 TCGA-60-2720-01 2 74074661 74074661 G C STAMBP Missense_Mutation p.E175Q 0.10 tolerated(0.15) probably_damaging(0.931) TCGA-60-2720-01 2 74480125 74480125 T C SLC4A5 Missense_Mutation p.K415R 0.18 tolerated(0.06) probably_damaging(0.973) TCGA-60-2720-01 2 80530489 80530489 G T LRRTM1 Silent p.L152L 0.18 TCGA-60-2720-01 2 90060888 90060888 T G IGKV6D-21 Missense_Mutation p.S79A 0.09 tolerated(0.71) benign(0.024) TCGA-60-2720-01 2 90060889 90060889 C A IGKV6D-21 Nonsense_Mutation p.S79* 0.08 TCGA-60-2720-01 2 99149956 99149956 G C INPP4A Missense_Mutation p.E90Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-60-2720-01 3 113375001 113375001 T C KIAA2018 Missense_Mutation p.Q1843R 0.08 possibly_damaging(0.581) TCGA-60-2720-01 3 118937595 118937595 C A B4GALT4 Silent p.G233G 0.10 TCGA-60-2720-01 3 124951424 124951424 C G ZNF148 Missense_Mutation p.E716Q 0.10 deleterious(0.02) possibly_damaging(0.703) TCGA-60-2720-01 3 127295676 127295676 C A TPRA1 Missense_Mutation p.G136C 0.13 deleterious(0.05) probably_damaging(1) TCGA-60-2720-01 3 132320083 132320083 T C ACKR4 Missense_Mutation p.M281T 0.08 tolerated(0.06) benign(0.105) TCGA-60-2720-01 3 134514402 134514402 C A EPHB1 5'UTR 0.16 TCGA-60-2720-01 3 134670815 134670815 G A EPHB1 Silent p.G242G 0.13 TCGA-60-2720-01 3 142408474 142408474 G C PLS1 Silent p.L332L 0.06 TCGA-60-2720-01 3 148583284 148583284 C A CPA3 Silent p.P31P 0.08 TCGA-60-2720-01 3 150344895 150344895 G C SELT Missense_Mutation p.D188H 0.16 deleterious_low_confidence(0.02) benign(0.372) TCGA-60-2720-01 3 164905811 164905811 G T SLITRK3 Silent p.L936L 0.13 TCGA-60-2720-01 3 164907492 164907492 C T SLITRK3 Missense_Mutation p.G376E 0.15 tolerated(0.59) possibly_damaging(0.804) TCGA-60-2720-01 3 167245649 167245649 C A WDR49 Missense_Mutation p.V503L 0.14 tolerated(0.61) benign(0.058) TCGA-60-2720-01 3 184034521 184034521 G - EIF4G1 Frame_Shift_Del 0.15 TCGA-60-2720-01 3 189712013 189712013 C A LEPREL1 Missense_Mutation p.R231S 0.18 tolerated(0.55) benign(0.001) TCGA-60-2720-01 3 194177845 194177845 T C ATP13A3 Missense_Mutation p.T180A 0.16 tolerated(0.07) benign(0.013) TCGA-60-2720-01 3 197238966 197238966 C T BDH1 Missense_Mutation p.D278N 0.10 deleterious(0.01) possibly_damaging(0.628) TCGA-60-2720-01 3 197428728 197428728 C G KIAA0226 Missense_Mutation p.R193T 0.09 tolerated(0.15) benign(0.097) TCGA-60-2720-01 3 24138662 24138662 C G LINC00691 RNA 0.42 TCGA-60-2720-01 3 44943025 44943025 G C TGM4 Missense_Mutation p.E223Q 0.27 tolerated(0.35) benign(0.006) TCGA-60-2720-01 3 47164744 47164744 G C SETD2 Nonsense_Mutation p.S461* 0.44 TCGA-60-2720-01 3 50404011 50404011 C G CACNA2D2 Missense_Mutation p.E886Q 0.16 tolerated(0.27) benign(0.311) TCGA-60-2720-01 3 52398929 52398929 C T DNAH1 Silent p.I1804I 0.22 TCGA-60-2720-01 3 52851038 52851038 G A ITIH4 Missense_Mutation p.A778V 0.20 tolerated(0.28) benign(0.185) TCGA-60-2720-01 3 78683154 78683154 A G ROBO1 Missense_Mutation p.Y1138H 0.16 tolerated(0.49) probably_damaging(0.986) TCGA-60-2720-01 4 10447079 10447079 G T ZNF518B Missense_Mutation p.P292T 0.15 tolerated(0.1) possibly_damaging(0.763) TCGA-60-2720-01 4 164247564 164247564 C A NPY1R Missense_Mutation p.G48V 0.19 deleterious(0.02) benign(0.147) TCGA-60-2720-01 4 186379310 186379310 G C CCDC110 Missense_Mutation p.Q811E 0.17 tolerated(0.09) benign(0.07) TCGA-60-2720-01 4 186380438 186380438 G T CCDC110 Missense_Mutation p.L435I 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-60-2720-01 4 20619273 20619273 G T SLIT2 Nonsense_Mutation p.E1450* 0.19 TCGA-60-2720-01 4 20619274 20619274 G T SLIT2 Splice_Site p.X1450_splice 0.19 TCGA-60-2720-01 4 39436170 39436170 G C KLB Missense_Mutation p.G389A 0.18 tolerated(0.09) probably_damaging(0.995) TCGA-60-2720-01 4 48575205 48575205 C G FRYL Missense_Mutation p.E968Q 0.05 deleterious(0) probably_damaging(0.956) TCGA-60-2720-01 4 56846395 56846395 A T CEP135 Missense_Mutation p.E520D 0.25 tolerated(0.28) benign(0.177) TCGA-60-2720-01 4 57180260 57180260 G C KIAA1211 Missense_Mutation p.G198R 0.14 deleterious(0) probably_damaging(0.958) TCGA-60-2720-01 4 71522013 71522013 G C IGJ 3'UTR 0.15 TCGA-60-2720-01 4 84519333 84519333 G C AGPAT9 Splice_Site p.X375_splice 0.16 TCGA-60-2720-01 5 101816026 101816026 C A SLCO6A1 Silent p.L157L 0.15 TCGA-60-2720-01 5 10286599 10286599 A G CMBL Silent p.S111S 0.15 TCGA-60-2720-01 5 121187661 121187661 G A FTMT Translation_Start_Site p.M1? 0.15 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-60-2720-01 5 13766220 13766220 G C DNAH5 Missense_Mutation p.I3322M 0.30 benign(0.045) TCGA-60-2720-01 5 13922215 13922215 C T DNAH5 Splice_Site p.X220_splice 0.09 TCGA-60-2720-01 5 140166707 140166707 G A PCDHA1 Missense_Mutation p.V278I 0.13 tolerated_low_confidence(0.79) benign(0.002) TCGA-60-2720-01 5 140250099 140250099 T A PCDHA11 Missense_Mutation p.C471S 0.16 tolerated_low_confidence(0.56) benign(0.006) TCGA-60-2720-01 5 140589822 140589822 C A PCDHB12 Missense_Mutation p.A448D 0.17 deleterious_low_confidence(0) benign(0.115) TCGA-60-2720-01 5 140789620 140789620 C T PCDHGB6 Silent p.F617F 0.16 TCGA-60-2720-01 5 140789936 140789936 A G PCDHGB6 Missense_Mutation p.T723A 0.13 tolerated(0.99) benign(0.001) TCGA-60-2720-01 5 167855776 167855776 A G WWC1 Missense_Mutation p.I662V 0.19 tolerated(1) benign(0) TCGA-60-2720-01 5 168119667 168119667 C G SLIT3 Missense_Mutation p.E1041Q 0.09 tolerated(0.17) benign(0.34) TCGA-60-2720-01 5 171520567 171520567 C - STK10 Frame_Shift_Del p.G468Afs*41 0.17 TCGA-60-2720-01 5 180377429 180377429 C A BTNL8 Missense_Mutation p.T463N 0.16 tolerated(0.25) benign(0.023) TCGA-60-2720-01 5 24593560 24593560 C - CDH10 Frame_Shift_Del p.V14Yfs*11 0.12 TCGA-60-2720-01 5 31534424 31534424 G A C5orf22 Missense_Mutation p.A43T 0.05 tolerated(0.39) benign(0.052) TCGA-60-2720-01 5 33938115 33938115 C A RXFP3 Missense_Mutation p.P424T 0.28 deleterious(0.02) benign(0.018) TCGA-60-2720-01 5 35084623 35084623 G T PRLR Missense_Mutation p.Q108K 0.31 tolerated(0.41) benign(0.002) TCGA-60-2720-01 5 41155154 41155154 G T C6 Missense_Mutation p.T674N 0.12 deleterious(0.05) benign(0.19) TCGA-60-2720-01 5 41382263 41382263 G C PLCXD3 Silent p.V159V 0.11 TCGA-60-2720-01 5 42718770 42718770 C T GHR Silent p.T387T 0.15 TCGA-60-2720-01 5 45462025 45462025 C T HCN1 Missense_Mutation p.D312N 0.05 tolerated(0.23) probably_damaging(0.996) TCGA-60-2720-01 5 54706356 54706356 G C SKIV2L2 Missense_Mutation p.D884H 0.19 deleterious(0.02) probably_damaging(0.925) TCGA-60-2720-01 5 57913583 57913583 T C RAB3C Silent p.F46F 0.24 TCGA-60-2720-01 5 7414835 7414835 G - ADCY2 Frame_Shift_Del p.G121Dfs*75 0.27 TCGA-60-2720-01 5 76732210 76732210 T C WDR41 Missense_Mutation p.N368S 0.12 tolerated(0.67) benign(0.027) TCGA-60-2720-01 6 105178255 105178255 C A HACE1 Missense_Mutation p.M850I 0.13 tolerated(0.19) benign(0.146) TCGA-60-2720-01 6 109819062 109819062 C G AK9 Missense_Mutation p.R1718P 0.09 deleterious(0.05) probably_damaging(0.999) TCGA-60-2720-01 6 110423414 110423414 G A WASF1 Missense_Mutation p.A300V 0.16 tolerated(0.24) unknown(0) TCGA-60-2720-01 6 112375509 112375509 G C WISP3 Translation_Start_Site p.M1? 0.15 benign(0.043) TCGA-60-2720-01 6 117198459 117198459 G T RFX6 Silent p.L7L 0.08 TCGA-60-2720-01 6 117237368 117237368 A G RFX6 Missense_Mutation p.Q288R 0.12 deleterious(0.01) possibly_damaging(0.638) TCGA-60-2720-01 6 117896345 117896345 T G GOPC Silent p.A215A 0.17 TCGA-60-2720-01 6 12934015 12934015 C G PHACTR1 Nonsense_Mutation p.S134* 0.10 TCGA-60-2720-01 6 13327088 13327088 C T TBC1D7 Missense_Mutation p.E15K 0.09 deleterious(0.03) possibly_damaging(0.562) TCGA-60-2720-01 6 152650936 152650936 C A SYNE1 Missense_Mutation p.D4962Y 0.11 possibly_damaging(0.905) TCGA-60-2720-01 6 155728352 155728352 C T NOX3 Missense_Mutation p.D498N 0.13 deleterious(0) probably_damaging(1) TCGA-60-2720-01 6 156267981 156267981 C A MIR1202 RNA 0.17 TCGA-60-2720-01 6 158882724 158882724 G T TULP4 Missense_Mutation p.R330L 0.16 tolerated(0.14) benign(0.349) TCGA-60-2720-01 6 158924188 158924188 C T TULP4 Nonsense_Mutation p.R1165* 0.09 TCGA-60-2720-01 6 160664782 160664782 C G SLC22A2 Missense_Mutation p.M367I 0.09 deleterious(0.01) benign(0.344) TCGA-60-2720-01 6 1612301 1612301 C T FOXC1 Missense_Mutation p.R541C 0.18 deleterious(0) probably_damaging(0.973) TCGA-60-2720-01 6 26216643 26216643 C G HIST1H2BG Missense_Mutation p.E77Q 0.16 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-60-2720-01 6 30309724 30309724 C G TRIM39 Missense_Mutation p.S415R 0.15 tolerated(0.12) probably_damaging(0.984) TCGA-60-2720-01 6 30707977 30707977 G C FLOT1 Silent p.V227V 0.23 TCGA-60-2720-01 6 31237800 31237800 C A HLA-C Missense_Mutation p.V320F 0.16 tolerated_low_confidence(0.27) probably_damaging(0.993) TCGA-60-2720-01 6 31639832 31639832 C T CSNK2B-LY6G5B-1181 3'UTR 0.24 TCGA-60-2720-01 6 34804081 34804081 G T UHRF1BP1 Missense_Mutation p.R330L 0.19 deleterious(0.02) possibly_damaging(0.815) TCGA-60-2720-01 6 35755727 35755727 C G CLPSL1 Missense_Mutation p.I102M 0.08 deleterious(0.02) probably_damaging(0.946) TCGA-60-2720-01 6 44397592 44397592 G T CDC5L Missense_Mutation p.R679L 0.14 tolerated(0.36) possibly_damaging(0.551) TCGA-60-2720-01 6 49754754 49754754 G T PGK2 Nonsense_Mutation p.Y49* 0.12 TCGA-60-2720-01 6 50011472 50011472 G C DEFB112 Nonsense_Mutation p.S53* 0.12 TCGA-60-2720-01 6 51934297 51934297 T C PKHD1 Missense_Mutation p.I246V 0.09 tolerated(0.33) benign(0.015) TCGA-60-2720-01 6 70981372 70981372 G T COL9A1 Missense_Mutation p.R377S 0.13 probably_damaging(0.982) TCGA-60-2720-01 6 75833800 75833800 T C COL12A1 Silent p.G2245G 0.18 TCGA-60-2720-01 6 75875447 75875447 G A COL12A1 Missense_Mutation p.S920L 0.11 benign(0.111) TCGA-60-2720-01 6 75887482 75887482 T C COL12A1 Silent p.T778T 0.14 TCGA-60-2720-01 6 76728496 76728496 G A IMPG1 Missense_Mutation p.A249V 0.15 tolerated(0.11) benign(0.257) TCGA-60-2720-01 7 106938787 106938787 C T COG5 Silent p.S402S 0.22 TCGA-60-2720-01 7 120906456 120906456 C T CPED1 Missense_Mutation p.S829L 0.15 deleterious(0.04) benign(0.355) TCGA-60-2720-01 7 127224785 127224785 C A GCC1 Missense_Mutation p.G151V 0.14 deleterious(0.03) benign(0.093) TCGA-60-2720-01 7 127727088 127727088 C T SND1 Silent p.I801I 0.12 TCGA-60-2720-01 7 132193188 132193188 C G PLXNA4 Missense_Mutation p.D89H 0.07 tolerated(0.13) possibly_damaging(0.83) TCGA-60-2720-01 7 133812405 133812405 G T LRGUK Missense_Mutation p.M95I 0.19 tolerated(0.19) benign(0.015) TCGA-60-2720-01 7 134849576 134849576 C T TMEM140 Missense_Mutation p.A128V 0.13 deleterious(0.02) possibly_damaging(0.869) TCGA-60-2720-01 7 142749826 142749826 A T OR6V1 Missense_Mutation p.Y130F 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-60-2720-01 7 148802388 148802388 C A ZNF425 Missense_Mutation p.C192F 0.12 tolerated(0.21) possibly_damaging(0.609) TCGA-60-2720-01 7 158455040 158455040 G A NCAPG2 Missense_Mutation p.S612L 0.12 tolerated(0.11) probably_damaging(0.996) TCGA-60-2720-01 7 20403298 20403298 G A ITGB8 Missense_Mutation p.A56T 0.09 tolerated(0.63) benign(0.003) TCGA-60-2720-01 7 21639650 21639650 T A DNAH11 Missense_Mutation p.D971E 0.08 benign(0.076) TCGA-60-2720-01 7 27934861 27934861 T C JAZF1 Silent p.S121S 0.13 TCGA-60-2720-01 7 43484409 43484409 C A HECW1 Silent p.I546I 0.10 TCGA-60-2720-01 7 5545180 5545180 C T FBXL18 Missense_Mutation p.E34K 0.16 deleterious(0) probably_damaging(0.997) TCGA-60-2720-01 7 57187531 57187531 G T ZNF479 3'UTR 0.15 TCGA-60-2720-01 7 6187427 6187427 G C USP42 Missense_Mutation p.Q430H 0.13 deleterious(0.03) probably_damaging(0.999) TCGA-60-2720-01 7 65579853 65579853 G C CRCP 5'UTR 0.17 TCGA-60-2720-01 7 80378307 80378307 T C SEMA3C Silent p.V583V 0.15 TCGA-60-2720-01 7 83636776 83636776 T C SEMA3A Missense_Mutation p.M345V 0.16 deleterious(0.01) benign(0.413) TCGA-60-2720-01 7 86468931 86468931 G T GRM3 Missense_Mutation p.V701L 0.08 tolerated(1) benign(0.006) TCGA-60-2720-01 7 91630969 91630969 G C AKAP9 Missense_Mutation p.E580Q 0.13 probably_damaging(0.997) TCGA-60-2720-01 7 92099651 92099651 G T ERVW-1 Silent p.P15P 0.13 TCGA-60-2720-01 7 92244319 92244319 G C CDK6 3'UTR 0.36 TCGA-60-2720-01 7 94937332 94937332 G T PON1 Missense_Mutation p.P230H 0.12 deleterious(0.01) benign(0.248) TCGA-60-2720-01 7 94937345 94937345 T A PON1 Missense_Mutation p.I226F 0.13 deleterious(0) probably_damaging(1) TCGA-60-2720-01 7 99358583 99358583 G T CYP3A4 Missense_Mutation p.D425E 0.12 tolerated(1) benign(0.019) TCGA-60-2720-01 7 99831237 99831237 T C GATS Silent p.E69E 0.12 TCGA-60-2720-01 8 104898074 104898074 G T RIMS2 Missense_Mutation p.R416L 0.27 tolerated_low_confidence(0.3) benign(0.151) TCGA-60-2720-01 8 110477264 110477264 G T PKHD1L1 Missense_Mutation p.G2735C 0.23 deleterious(0.01) probably_damaging(0.969) TCGA-60-2720-01 8 11167123 11167123 G A MTMR9 Silent p.L299L 0.13 TCGA-60-2720-01 8 113323290 113323290 C T CSMD3 Missense_Mutation p.R2601Q 0.05 deleterious(0.01) possibly_damaging(0.853) TCGA-60-2720-01 8 124253547 124253547 C G C8orf76 Missense_Mutation p.D14H 0.08 deleterious(0) probably_damaging(0.971) TCGA-60-2720-01 8 133044247 133044247 C T OC90 Silent p.V304V 0.04 TCGA-60-2720-01 8 139601598 139601598 A T COL22A1 Silent p.P1593P 0.09 TCGA-60-2720-01 8 139629157 139629157 C T COL22A1 Silent p.R1290R 0.31 TCGA-60-2720-01 8 141370151 141370151 T C TRAPPC9 Missense_Mutation p.Q596R 0.40 tolerated(0.19) possibly_damaging(0.725) TCGA-60-2720-01 8 145151528 145151528 A T CYC1 Missense_Mutation p.Y218F 0.05 deleterious(0.01) probably_damaging(0.996) TCGA-60-2720-01 8 145698044 145698044 C T KIFC2 Silent p.L606L 0.27 TCGA-60-2720-01 8 22974687 22974687 T G TNFRSF10C 3'UTR 0.11 TCGA-60-2720-01 8 26627482 26627482 G T ADRA1A Intron 0.14 TCGA-60-2720-01 8 35402012 35402012 C G UNC5D Intron 0.04 TCGA-60-2720-01 8 39606913 39606913 G T ADAM2 Nonsense_Mutation p.C644* 0.05 TCGA-60-2720-01 8 41798770 41798770 C A KAT6A Nonsense_Mutation p.E877* 0.11 TCGA-60-2720-01 8 43152602 43152602 G T POTEA Intron 0.06 TCGA-60-2720-01 8 52321575 52321575 G C PXDNL Missense_Mutation p.A870G 0.07 tolerated(1) benign(0) TCGA-60-2720-01 8 62212755 62212755 C G CLVS1 Missense_Mutation p.I123M 0.28 tolerated(0.19) benign(0.03) TCGA-60-2720-01 8 68968096 68968096 G T PREX2 Missense_Mutation p.W375C 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-60-2720-01 8 77618685 77618685 A T ZFHX4 Missense_Mutation p.S788C 0.07 possibly_damaging(0.843) TCGA-60-2720-01 8 8750069 8750069 A G MFHAS1 Missense_Mutation p.F167S 0.16 tolerated(0.26) probably_damaging(0.999) TCGA-60-2720-01 8 95751682 95751682 A T DPY19L4 Nonsense_Mutation p.K129* 0.31 TCGA-60-2720-01 9 111979247 111979247 C G EPB41L4B Missense_Mutation p.E530Q 0.19 tolerated(0.26) benign(0.427) TCGA-60-2720-01 9 119115100 119115100 C A PAPPA Silent p.A1360A 0.12 TCGA-60-2720-01 9 139581676 139581676 G C AGPAT2 Missense_Mutation p.S45W 0.15 tolerated(0.07) possibly_damaging(0.8) TCGA-60-2720-01 9 139905173 139905173 T A ABCA2 Missense_Mutation p.T2025S 0.23 tolerated(0.8) benign(0.023) TCGA-60-2720-01 9 140246640 140246640 C G EXD3 Missense_Mutation p.D351H 0.13 tolerated(0.08) benign(0.431) TCGA-60-2720-01 9 21077471 21077471 G A IFNB1 Missense_Mutation p.T133I 0.16 tolerated(0.09) possibly_damaging(0.528) TCGA-60-2720-01 9 71687670 71687670 G C FXN Missense_Mutation p.D209H 0.13 deleterious(0.01) benign(0.44) TCGA-60-2720-01 9 75773356 75773356 C T ANXA1 5'UTR 0.31 TCGA-60-2720-01 9 86498736 86498736 T C KIF27 Missense_Mutation p.R813G 0.19 deleterious(0) benign(0.066) TCGA-60-2720-01 X 100880489 100880489 A T ARMCX3 Missense_Mutation p.T174S 0.09 tolerated(0.49) probably_damaging(0.973) TCGA-60-2720-01 X 10109498 10109498 G T WWC3 Missense_Mutation p.R1079M 0.08 deleterious(0) probably_damaging(0.944) TCGA-60-2720-01 X 101138538 101138538 C G ZMAT1 Missense_Mutation p.V621L 0.12 tolerated(0.19) benign(0.232) TCGA-60-2720-01 X 101818591 101818591 C A NXF4 RNA 0.08 TCGA-60-2720-01 X 106844066 106844066 C A FRMPD3 Missense_Mutation p.L966M 0.20 tolerated_low_confidence(0.56) benign(0.047) TCGA-60-2720-01 X 109694590 109694590 G C RGAG1 Missense_Mutation p.A249P 0.11 deleterious(0) probably_damaging(0.999) TCGA-60-2720-01 X 111025199 111025199 G T TRPC5 Missense_Mutation p.D688E 0.16 tolerated(1) benign(0.002) TCGA-60-2720-01 X 111195319 111195319 G C TRPC5 Silent p.G110G 0.18 TCGA-60-2720-01 X 117033294 117033294 C A KLHL13 Missense_Mutation p.W518C 0.16 deleterious(0) probably_damaging(1) TCGA-60-2720-01 X 117815708 117815708 G T DOCK11 Missense_Mutation p.A1972S 0.11 tolerated(0.65) benign(0.003) TCGA-60-2720-01 X 129148672 129148672 C - BCORL1 Frame_Shift_Del p.M644Cfs*4 0.22 TCGA-60-2720-01 X 131803156 131803156 G T HS6ST2 Missense_Mutation p.T351K 0.15 tolerated_low_confidence(0.61) benign(0.037) TCGA-60-2720-01 X 133549058 133549058 G T PHF6 Missense_Mutation p.G248C 0.12 deleterious(0) probably_damaging(1) TCGA-60-2720-01 X 134991916 134991916 G A SAGE1 Silent p.P567P 0.13 TCGA-60-2720-01 X 135430018 135430018 G T GPR112 Missense_Mutation p.A1385S 0.08 deleterious(0) benign(0.045) TCGA-60-2720-01 X 135730393 135730393 C A CD40LG 5'UTR 0.12 TCGA-60-2720-01 X 139038712 139038712 T C CXorf66 Silent p.L143L 0.10 TCGA-60-2720-01 X 140994934 140994934 C G MAGEC1 Missense_Mutation p.Q582E 0.17 tolerated_low_confidence(0.22) benign(0.042) TCGA-60-2720-01 X 148685689 148685689 G T TMEM185A Silent p.A157A 0.04 TCGA-60-2720-01 X 148685690 148685690 G T TMEM185A Missense_Mutation p.A157D 0.04 deleterious(0) possibly_damaging(0.844) TCGA-60-2720-01 X 150909321 150909321 C A CNGA2 Missense_Mutation p.L144I 0.10 deleterious(0.03) probably_damaging(0.996) TCGA-60-2720-01 X 151092696 151092696 A G MAGEA4 Missense_Mutation p.Y187C 0.17 deleterious(0.04) possibly_damaging(0.795) TCGA-60-2720-01 X 151092938 151092939 GC - MAGEA4 Frame_Shift_Del p.R269Lfs*2 0.23 TCGA-60-2720-01 X 151817747 151817747 G T GABRQ Silent p.L187L 0.07 TCGA-60-2720-01 X 151899803 151899803 T A MAGEA12 3'UTR 0.20 TCGA-60-2720-01 X 152087623 152087623 G T ZNF185 Silent p.R176R 0.12 TCGA-60-2720-01 X 15311321 15311321 G T ASB11 Missense_Mutation p.A164D 0.08 tolerated(0.1) possibly_damaging(0.551) TCGA-60-2720-01 X 153631282 153631282 C A DNASE1L1 Splice_Site p.X258_splice 0.09 TCGA-60-2720-01 X 153631283 153631283 C A DNASE1L1 Missense_Mutation p.E258D 0.09 deleterious(0.01) possibly_damaging(0.889) TCGA-60-2720-01 X 15657880 15657880 C G TMEM27 Splice_Site p.X106_splice 0.07 TCGA-60-2720-01 X 18283874 18283874 G T SCML2 Missense_Mutation p.A260E 0.13 tolerated(0.45) benign(0.022) TCGA-60-2720-01 X 18919706 18919706 G C PHKA2 Missense_Mutation p.S975C 0.13 deleterious(0) probably_damaging(0.95) TCGA-60-2720-01 X 19021157 19021157 G A GPR64 Silent p.F679F 0.09 TCGA-60-2720-01 X 23018387 23018387 A G DDX53 Missense_Mutation p.I71M 0.06 deleterious(0.03) possibly_damaging(0.718) TCGA-60-2720-01 X 34148947 34148947 G C FAM47A Silent p.P483P 0.17 TCGA-60-2720-01 X 45013207 45013207 C A CXorf36 Silent p.G303G 0.08 TCGA-60-2720-01 X 47775612 47775612 G C ZNF81 Missense_Mutation p.E523Q 0.11 deleterious(0) probably_damaging(0.998) TCGA-60-2720-01 X 48973958 48973958 T C GPKOW Missense_Mutation p.Y258C 0.10 deleterious(0) probably_damaging(0.992) TCGA-60-2720-01 X 49066420 49066420 C A CACNA1F Missense_Mutation p.E1568D 0.07 deleterious(0) benign(0.176) TCGA-60-2720-01 X 49105371 49105371 G T CCDC22 Nonsense_Mutation p.E509* 0.11 TCGA-60-2720-01 X 50350966 50350966 G C SHROOM4 Nonsense_Mutation p.S1059* 0.09 TCGA-60-2720-01 X 50377427 50377427 C G SHROOM4 Missense_Mutation p.G549A 0.15 tolerated(0.2) benign(0.001) TCGA-60-2720-01 X 50659053 50659053 T G BMP15 Missense_Mutation p.C209G 0.10 deleterious(0.01) possibly_damaging(0.843) TCGA-60-2720-01 X 52825663 52825663 C G SPANXN5 Missense_Mutation p.E28D 0.09 deleterious(0.02) possibly_damaging(0.871) TCGA-60-2720-01 X 53616585 53616585 C A HUWE1 Silent p.V1461V 0.10 TCGA-60-2720-01 X 54776515 54776515 C A ITIH6 Missense_Mutation p.R1252L 0.16 tolerated(0.32) benign(0.17) TCGA-60-2720-01 X 54783527 54783527 G A ITIH6 Missense_Mutation p.P994S 0.09 tolerated(0.17) benign(0.014) TCGA-60-2720-01 X 54975540 54975540 C G PFKFB1 Missense_Mutation p.E321Q 0.11 probably_damaging(0.999) TCGA-60-2720-01 X 55028721 55028721 G T APEX2 Silent p.V93V 0.15 TCGA-60-2720-01 X 55028722 55028722 G T APEX2 Missense_Mutation p.A94S 0.15 deleterious(0.05) benign(0.367) TCGA-60-2720-01 X 63412770 63412770 C A AMER1 Missense_Mutation p.A133S 0.10 tolerated(0.06) benign(0.219) TCGA-60-2720-01 X 63445504 63445504 C G ASB12 Missense_Mutation p.K9N 0.14 tolerated(0.29) benign(0.006) TCGA-60-2720-01 X 70320607 70320607 C G FOXO4 Missense_Mutation p.S176C 0.17 deleterious(0.05) probably_damaging(0.975) TCGA-60-2720-01 X 71416654 71416654 A G PIN4 Missense_Mutation p.E71G 0.13 deleterious(0) probably_damaging(0.995) TCGA-60-2720-01 X 73046929 73046929 G T XIST RNA 0.14 TCGA-60-2720-01 X 73744338 73744338 C A SLC16A2 Missense_Mutation p.S240R 0.12 deleterious(0) probably_damaging(0.962) TCGA-60-2720-01 X 75650413 75650413 G T MAGEE1 Missense_Mutation p.R697I 0.15 deleterious(0) probably_damaging(0.939) TCGA-60-2720-01 X 76920166 76920166 C A ATRX Missense_Mutation p.G1304V 0.09 benign(0.005) TCGA-60-2720-01 X 76938172 76938172 C A ATRX Missense_Mutation p.G859V 0.09 benign(0.005) TCGA-60-2720-01 X 76938658 76938658 T C ATRX Missense_Mutation p.K697R 0.07 probably_damaging(0.991) TCGA-60-2720-01 X 77388921 77388921 G T TAF9B Missense_Mutation p.P169Q 0.10 tolerated(0.1) benign(0.102) TCGA-60-2720-01 X 77912921 77912921 A C ZCCHC5 Missense_Mutation p.C333G 0.10 tolerated(0.35) possibly_damaging(0.796) TCGA-60-2720-01 X 83128432 83128432 C G CYLC1 Nonsense_Mutation p.S239* 0.20 TCGA-60-2720-01 X 85906092 85906092 A G DACH2 Missense_Mutation p.M232V 0.13 tolerated(1) benign(0.02) TCGA-60-2720-01 X 89177475 89177475 C A TGIF2LX Missense_Mutation p.H131N 0.10 tolerated(0.24) benign(0) TCGA-60-2720-01 X 89177476 89177476 A T TGIF2LX Missense_Mutation p.H131L 0.10 deleterious(0.03) benign(0.034) TCGA-60-2721-01 10 102116493 102116493 G A SCD Silent p.E284E 0.20 TCGA-60-2721-01 10 131973265 131973265 G A GLRX3 Missense_Mutation p.R290Q 0.05 deleterious(0.01) possibly_damaging(0.648) TCGA-60-2721-01 10 21177072 21177072 G A NEBL Missense_Mutation p.T108I 0.30 deleterious(0) probably_damaging(0.999) TCGA-60-2721-01 10 28233864 28233864 C G ARMC4 Missense_Mutation p.A472P 0.20 deleterious(0) possibly_damaging(0.866) TCGA-60-2721-01 10 32098194 32098194 C A ARHGAP12 Missense_Mutation p.A698S 0.21 deleterious(0) possibly_damaging(0.839) TCGA-60-2721-01 10 37508409 37508409 C T ANKRD30A Nonsense_Mutation p.Q1201* 0.19 TCGA-60-2721-01 10 5227068 5227068 C T AKR1CL1 5'UTR 0.24 TCGA-60-2721-01 11 107403129 107403129 C A ALKBH8 Missense_Mutation p.V259F 0.20 deleterious(0) probably_damaging(0.999) TCGA-60-2721-01 11 46694172 46694172 C A ATG13 3'UTR 0.11 TCGA-60-2721-01 11 55541181 55541181 G A OR5D13 Missense_Mutation p.E90K 0.26 tolerated(0.25) benign(0.126) TCGA-60-2721-01 11 56510376 56510376 G A OR9G4 Silent p.I304I 0.06 TCGA-60-2721-01 11 57077199 57077199 C T TNKS1BP1 Missense_Mutation p.E996K 0.06 tolerated(0.43) benign(0.269) TCGA-60-2721-01 11 65048533 65048533 T C POLA2 Missense_Mutation p.L272P 0.03 deleterious(0) probably_damaging(0.935) TCGA-60-2721-01 11 68549256 68549256 G A CPT1A Silent p.H445H 0.24 TCGA-60-2721-01 11 74049577 74049577 G A PGM2L1 Missense_Mutation p.R568W 0.07 deleterious(0) probably_damaging(1) TCGA-60-2721-01 11 93466720 93466720 G A KIAA1731 3'Flank 0.09 TCGA-60-2721-01 12 109849759 109849759 G C MYO1H Missense_Mutation p.E475Q 0.11 tolerated(0.37) probably_damaging(0.947) TCGA-60-2721-01 12 110784258 110784258 G A ATP2A2 Missense_Mutation p.D1038N 0.18 tolerated_low_confidence(0.46) benign(0) TCGA-60-2721-01 12 111957681 111957681 A T ATXN2 Splice_Site p.X489_splice 0.27 TCGA-60-2721-01 12 112622477 112622477 C G HECTD4 Missense_Mutation p.E3285D 0.08 possibly_damaging(0.891) TCGA-60-2721-01 12 11905406 11905406 C A ETV6 Missense_Mutation p.P19H 0.24 deleterious(0) probably_damaging(0.999) TCGA-60-2721-01 12 125461949 125461949 C T DHX37 Missense_Mutation p.E276K 0.22 deleterious(0) probably_damaging(0.985) TCGA-60-2721-01 12 129294641 129294641 G C SLC15A4 Silent p.V286V 0.26 TCGA-60-2721-01 12 129299345 129299345 G A SLC15A4 Nonsense_Mutation p.R273* 0.34 TCGA-60-2721-01 12 132425925 132425925 G T PUS1 Silent p.A211A 0.30 TCGA-60-2721-01 12 31238029 31238029 G A DDX11 Missense_Mutation p.E203K 0.44 tolerated(0.09) possibly_damaging(0.604) TCGA-60-2721-01 12 49221670 49221670 G C CACNB3 Missense_Mutation p.K481N 0.26 deleterious_low_confidence(0) benign(0.146) TCGA-60-2721-01 12 5021367 5021367 G C KCNA1 Missense_Mutation p.E275Q 0.05 tolerated(0.45) benign(0.082) TCGA-60-2721-01 12 9098176 9098176 C G M6PR Missense_Mutation p.E61Q 0.23 tolerated(0.36) benign(0.014) TCGA-60-2721-01 12 96259936 96259936 T C SNRPF 3'UTR 0.16 TCGA-60-2721-01 12 9750713 9750713 C T KLRB1 Nonsense_Mutation p.W153* 0.21 TCGA-60-2721-01 13 19748035 19748035 C T TUBA3C Missense_Mutation p.E441K 0.51 tolerated_low_confidence(0.09) unknown(0) TCGA-60-2721-01 13 20641042 20641042 G C ZMYM2 Missense_Mutation p.D1062H 0.09 tolerated(0.05) possibly_damaging(0.579) TCGA-60-2721-01 13 25672076 25672076 G T PABPC3 Missense_Mutation p.L580F 0.04 deleterious(0.03) probably_damaging(0.999) TCGA-60-2721-01 13 29608174 29608174 G C MTUS2 Silent p.L796L 0.09 TCGA-60-2721-01 14 105409050 105409050 T C AHNAK2 Silent p.K4246K 0.05 TCGA-60-2721-01 14 20779740 20779740 G C CCNB1IP1 Missense_Mutation p.S268C 0.05 tolerated_low_confidence(0.12) benign(0.001) TCGA-60-2721-01 14 24028084 24028084 G A THTPA 3'UTR 0.27 TCGA-60-2721-01 14 36159054 36159054 C T RALGAPA1 Missense_Mutation p.E808K 0.11 tolerated(0.06) probably_damaging(0.996) TCGA-60-2721-01 14 38060578 38060578 T G FOXA1 Missense_Mutation p.T471P 0.33 deleterious(0.01) benign(0.043) TCGA-60-2721-01 14 42356589 42356589 T C LRFN5 Missense_Mutation p.L254P 0.25 deleterious(0) probably_damaging(0.993) TCGA-60-2721-01 14 45432135 45432135 C A FAM179B Missense_Mutation p.Q171K 0.04 deleterious_low_confidence(0.02) benign(0.157) TCGA-60-2721-01 14 54418769 54418769 C G BMP4 Missense_Mutation p.E58Q 0.06 tolerated(0.07) probably_damaging(0.984) TCGA-60-2721-01 14 65197885 65197885 C T PLEKHG3 Nonsense_Mutation p.Q227* 0.29 TCGA-60-2721-01 14 65209878 65209878 C G PLEKHG3 Silent p.L983L 0.23 TCGA-60-2721-01 14 92958579 92958579 C G SLC24A4 Missense_Mutation p.L571V 0.08 tolerated(0.32) benign(0.07) TCGA-60-2721-01 15 100331367 100331367 A T AC090825.1 5'Flank 0.27 TCGA-60-2721-01 15 20170354 20170354 T C IGHV1OR15-9 Translation_Start_Site p.M1? 0.19 deleterious(0.01) possibly_damaging(0.583) TCGA-60-2721-01 15 33066430 33066430 C A FMN1 3'UTR 0.25 TCGA-60-2721-01 15 59502757 59502757 A T MYO1E Missense_Mutation p.Y440N 0.17 deleterious(0) probably_damaging(1) TCGA-60-2721-01 15 75975325 75975325 C T CSPG4 Missense_Mutation p.D1503N 0.19 deleterious(0) probably_damaging(1) TCGA-60-2721-01 15 78782999 78782999 C G IREB2 Silent p.A740A 0.23 TCGA-60-2721-01 16 10770015 10770015 G C TEKT5 Missense_Mutation p.A296G 0.24 deleterious(0.02) possibly_damaging(0.598) TCGA-60-2721-01 16 20430718 20430718 G T ACSM5 Missense_Mutation p.S195I 0.22 tolerated(0.07) benign(0.195) TCGA-60-2721-01 16 20491959 20491959 T C ACSM2A Missense_Mutation p.I449T 0.25 tolerated(0.81) benign(0.179) TCGA-60-2721-01 16 20554520 20554520 A G ACSM2B Missense_Mutation p.I449T 0.10 tolerated(0.8) benign(0.039) TCGA-60-2721-01 16 22291592 22291592 G T EEF2K Nonsense_Mutation p.E655* 0.26 TCGA-60-2721-01 16 24801959 24801959 A G TNRC6A Missense_Mutation p.T666A 0.25 tolerated(1) benign(0.001) TCGA-60-2721-01 16 30581187 30581187 C A ZNF688 3'UTR 0.20 TCGA-60-2721-01 16 49672141 49672141 T G ZNF423 Missense_Mutation p.N308H 0.23 tolerated(0.13) benign(0.289) TCGA-60-2721-01 16 58573746 58573746 G A CNOT1 Nonsense_Mutation p.R1640* 0.06 TCGA-60-2721-01 16 84158233 84158233 A C HSDL1 3'UTR 0.06 TCGA-60-2721-01 16 89346755 89346755 G A ANKRD11 Silent p.F2065F 0.13 TCGA-60-2721-01 16 89347871 89347871 G C ANKRD11 Silent p.P1693P 0.08 TCGA-60-2721-01 16 89347900 89347900 G A ANKRD11 Missense_Mutation p.H1684Y 0.07 benign(0.177) TCGA-60-2721-01 16 89347923 89347923 G C ANKRD11 Missense_Mutation p.S1676C 0.08 benign(0.007) TCGA-60-2721-01 16 89348601 89348601 G A ANKRD11 Missense_Mutation p.S1450F 0.07 probably_damaging(0.998) TCGA-60-2721-01 16 89348979 89348979 G C ANKRD11 Missense_Mutation p.S1324C 0.07 possibly_damaging(0.815) TCGA-60-2721-01 16 89349026 89349026 G A ANKRD11 Silent p.F1308F 0.06 TCGA-60-2721-01 16 89350119 89350119 G A ANKRD11 Missense_Mutation p.S944F 0.08 possibly_damaging(0.804) TCGA-60-2721-01 16 89350238 89350238 G A ANKRD11 Silent p.F904F 0.07 TCGA-60-2721-01 16 89350644 89350644 G A ANKRD11 Missense_Mutation p.S769L 0.07 benign(0.108) TCGA-60-2721-01 16 89350695 89350695 G A ANKRD11 Missense_Mutation p.S752F 0.05 probably_damaging(0.962) TCGA-60-2721-01 17 37439062 37439062 G A FBXL20 Nonsense_Mutation p.Q181* 0.07 TCGA-60-2721-01 17 39092695 39092695 G A KRT23 Missense_Mutation p.P54L 0.36 tolerated(0.73) benign(0.007) TCGA-60-2721-01 17 42744140 42744140 C G C17orf104 Missense_Mutation p.I287M 0.18 tolerated(0.16) benign(0.218) TCGA-60-2721-01 17 42744679 42744679 C G C17orf104 Missense_Mutation p.S467C 0.11 deleterious(0.04) possibly_damaging(0.605) TCGA-60-2721-01 17 5424256 5424256 C T NLRP1 Missense_Mutation p.G1287D 0.38 deleterious(0) probably_damaging(1) TCGA-60-2721-01 17 62856986 62856986 G C LRRC37A3 Nonsense_Mutation p.S1093* 0.09 TCGA-60-2721-01 17 68171863 68171863 G A KCNJ2 Missense_Mutation p.R228Q 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-60-2721-01 17 7344809 7344809 C T FGF11 Silent p.I71I 0.11 TCGA-60-2721-01 17 75190993 75190993 G A SEC14L1 Missense_Mutation p.D237N 0.23 tolerated(0.1) possibly_damaging(0.638) TCGA-60-2721-01 17 7578239 7578239 C A TP53 Nonsense_Mutation p.E204* 0.27 TCGA-60-2721-01 17 9684839 9684839 T C DHRS7C Missense_Mutation p.N76S 0.29 tolerated(0.66) benign(0.004) TCGA-60-2721-01 18 12353077 12353077 C G AFG3L2 Missense_Mutation p.K415N 0.19 deleterious(0.01) probably_damaging(0.94) TCGA-60-2721-01 18 14511953 14511953 C G POTEC Missense_Mutation p.E525Q 0.23 tolerated_low_confidence(0.14) probably_damaging(0.954) TCGA-60-2721-01 18 29246305 29246305 C G B4GALT6 Missense_Mutation p.R49P 0.23 deleterious(0.02) possibly_damaging(0.755) TCGA-60-2721-01 18 3071888 3071888 C G MYOM1 Splice_Site p.X1570_splice 0.13 TCGA-60-2721-01 18 3215123 3215123 C T MYOM1 Silent p.K33K 0.21 TCGA-60-2721-01 18 5416153 5416153 C T EPB41L3 Silent p.Q577Q 0.07 TCGA-60-2721-01 19 10670170 10670170 C T KRI1 Silent p.L359L 0.10 TCGA-60-2721-01 19 10670203 10670203 C G KRI1 Missense_Mutation p.E348D 0.12 deleterious(0.01) probably_damaging(0.952) TCGA-60-2721-01 19 11917420 11917420 A G ZNF491 Missense_Mutation p.K218E 0.17 deleterious(0.03) possibly_damaging(0.895) TCGA-60-2721-01 19 14199230 14199230 C G SAMD1 Nonstop_Mutation p.*433Sext*84 0.17 TCGA-60-2721-01 19 18085079 18085079 T C KCNN1 Missense_Mutation p.S128P 0.24 deleterious(0.01) benign(0.179) TCGA-60-2721-01 19 19375667 19375667 T C TM6SF2 Missense_Mutation p.M314V 0.26 tolerated(0.21) benign(0.156) TCGA-60-2721-01 19 22941881 22941881 A C ZNF99 Missense_Mutation p.I277R 0.21 tolerated(1) possibly_damaging(0.578) TCGA-60-2721-01 19 2717450 2717450 C T DIRAS1 Missense_Mutation p.V119M 0.36 deleterious(0) probably_damaging(0.995) TCGA-60-2721-01 19 3293414 3293414 G A CELF5 Silent p.K476K 0.28 TCGA-60-2721-01 19 35758459 35758459 C G LSR Missense_Mutation p.S579C 0.12 tolerated(0.1) possibly_damaging(0.711) TCGA-60-2721-01 19 36501929 36501929 C G ALKBH6 Missense_Mutation p.R96P 0.14 deleterious(0) probably_damaging(0.943) TCGA-60-2721-01 19 40872292 40872292 A G PLD3 Intron 0.18 TCGA-60-2721-01 19 45452030 45452030 C G APOC2 Missense_Mutation p.S43C 0.25 deleterious(0) possibly_damaging(0.819) TCGA-60-2721-01 19 47341624 47341624 G C AP2S1 3'UTR 0.18 TCGA-60-2721-01 19 48722256 48722256 G C CARD8 Missense_Mutation p.S392C 0.17 tolerated(1) benign(0.257) TCGA-60-2721-01 19 49376765 49376765 A G PPP1R15A Missense_Mutation p.D92G 0.20 tolerated(0.18) benign(0.046) TCGA-60-2721-01 19 52089993 52089993 G A ZNF175 Missense_Mutation p.E137K 0.06 tolerated(0.2) benign(0.002) TCGA-60-2721-01 19 52090212 52090212 G C ZNF175 Missense_Mutation p.E210Q 0.06 tolerated(0.37) benign(0.231) TCGA-60-2721-01 19 52729270 52729270 C T PPP2R1A 3'UTR 0.06 TCGA-60-2721-01 19 53311267 53311267 G A ZNF28 Silent p.V45V 0.11 TCGA-60-2721-01 19 54255733 54255733 G C MIR519A1 RNA 0.14 TCGA-60-2721-01 19 54844833 54844833 C T LILRA4 3'UTR 0.18 TCGA-60-2721-01 19 55294958 55294958 G C KIR2DL1 Missense_Mutation p.E280Q 0.06 deleterious(0.02) benign(0.314) TCGA-60-2721-01 19 56896044 56896044 C G ZNF582 Missense_Mutation p.V248L 0.19 tolerated(0.33) probably_damaging(0.973) TCGA-60-2721-01 19 57326518 57326518 G T PEG3 Missense_Mutation p.Q1098K 0.25 tolerated(0.07) benign(0.101) TCGA-60-2721-01 19 57640619 57640619 C G USP29 Missense_Mutation p.N192K 0.29 tolerated(1) possibly_damaging(0.591) TCGA-60-2721-01 19 57967405 57967405 G C VN1R1 Silent p.L150L 0.20 TCGA-60-2721-01 19 5867442 5867442 G C FUT5 Missense_Mutation p.P99A 0.22 tolerated(0.17) probably_damaging(0.961) TCGA-60-2721-01 19 9764312 9764312 G C ZNF562 Silent p.L198L 0.20 TCGA-60-2721-01 1 10477566 10477566 G C PGD Missense_Mutation p.S370T 0.21 deleterious(0) probably_damaging(0.97) TCGA-60-2721-01 1 10713705 10713705 G - CASZ1 Frame_Shift_Del p.I804Yfs*73 0.26 TCGA-60-2721-01 1 1153991 1153991 G A SDF4 Silent p.L253L 0.19 TCGA-60-2721-01 1 120930142 120930142 G A FCGR1B Silent p.L153L 0.12 TCGA-60-2721-01 1 145075044 145075044 C G PDE4DIP Missense_Mutation p.D84H 0.04 deleterious_low_confidence(0.04) probably_damaging(0.934) TCGA-60-2721-01 1 153654196 153654196 C A NPR1 Missense_Mutation p.A351E 0.40 deleterious(0) probably_damaging(0.986) TCGA-60-2721-01 1 154030689 154030689 C T NUP210L Missense_Mutation p.E995K 0.17 deleterious(0) probably_damaging(0.999) TCGA-60-2721-01 1 163295920 163295920 G A NUF2 Missense_Mutation p.D27N 0.42 deleterious(0.05) benign(0.402) TCGA-60-2721-01 1 170007490 170007490 G A KIFAP3 Missense_Mutation p.S153F 0.11 deleterious(0) probably_damaging(0.912) TCGA-60-2721-01 1 172539851 172539851 C G SUCO Missense_Mutation p.P344A 0.05 deleterious(0.04) probably_damaging(0.986) TCGA-60-2721-01 1 173470064 173470064 C T SLC9C2 3'UTR 0.29 TCGA-60-2721-01 1 176012392 176012392 C T RFWD2 Silent p.K514K 0.06 TCGA-60-2721-01 1 179090794 179090794 T C ABL2 Missense_Mutation p.Y299C 0.38 deleterious(0) probably_damaging(1) TCGA-60-2721-01 1 204092245 204092245 C T SOX13 Silent p.L380L 0.36 TCGA-60-2721-01 1 209956220 209956220 C T C1orf74 Missense_Mutation p.D254N 0.19 tolerated(0.25) benign(0.158) TCGA-60-2721-01 1 22165436 22165436 G A HSPG2 Silent p.T3344T 0.14 TCGA-60-2721-01 1 233398717 233398717 G A PCNXL2 Missense_Mutation p.H116Y 0.08 tolerated(0.89) benign(0.167) TCGA-60-2721-01 1 238050678 238050678 C G ZP4 Missense_Mutation p.R246T 0.05 tolerated(0.48) benign(0.016) TCGA-60-2721-01 1 245025970 245025970 C G HNRNPU Missense_Mutation p.D252H 0.05 deleterious(0.01) possibly_damaging(0.861) TCGA-60-2721-01 1 248263404 248263404 C T OR2L13 Missense_Mutation p.H243Y 0.37 deleterious(0) probably_damaging(1) TCGA-60-2721-01 1 248343740 248343741 GG T OR2M2 Frame_Shift_Del p.G152Afs*10 0.10 TCGA-60-2721-01 1 248344183 248344183 G A OR2M2 Missense_Mutation p.R299K 0.13 tolerated(0.39) benign(0.012) TCGA-60-2721-01 1 248458011 248458011 C T OR2T12 Silent p.V290V 0.08 TCGA-60-2721-01 1 248569787 248569787 G T OR2T1 Silent p.L164L 0.22 TCGA-60-2721-01 1 26883509 26883509 C G RPS6KA1 Missense_Mutation p.I343M 0.22 deleterious(0.02) benign(0.199) TCGA-60-2721-01 1 32797376 32797376 G C HDAC1 Missense_Mutation p.E396D 0.22 tolerated(0.15) benign(0.005) TCGA-60-2721-01 1 32829684 32829684 G T TSSK3 Missense_Mutation p.D212Y 0.14 deleterious(0) probably_damaging(0.973) TCGA-60-2721-01 1 52498835 52498835 G A KTI12 Missense_Mutation p.S200F 0.25 tolerated(0.1) benign(0.038) TCGA-60-2721-01 1 52828391 52828391 C G CC2D1B Missense_Mutation p.E33Q 0.24 deleterious(0) possibly_damaging(0.838) TCGA-60-2721-01 1 7880630 7880630 G C PER3 Silent p.L621L 0.09 TCGA-60-2721-01 1 89473410 89473410 G C GBP3 Missense_Mutation p.I595M 0.03 tolerated(0.14) probably_damaging(0.924) TCGA-60-2721-01 20 10603339 10603339 C G SLX4IP Missense_Mutation p.T180R 0.19 tolerated(0.09) benign(0.034) TCGA-60-2721-01 20 31671218 31671218 C T BPIFB4 Missense_Mutation p.P72L 0.32 deleterious_low_confidence(0) possibly_damaging(0.701) TCGA-60-2721-01 20 34263033 34263033 C A NFS1 Silent p.G294G 0.25 TCGA-60-2721-01 20 3783578 3783578 G T CDC25B Missense_Mutation p.D406Y 0.18 deleterious(0) probably_damaging(0.985) TCGA-60-2721-01 20 45700854 45700854 G A EYA2 Missense_Mutation p.G149E 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-60-2721-01 20 45867442 45867442 C G ZMYND8 Intron 0.31 TCGA-60-2721-01 20 47770589 47770589 T C STAU1 Silent p.V75V 0.25 TCGA-60-2721-01 20 61477180 61477180 A G TCFL5 Intron 0.35 TCGA-60-2721-01 20 9523233 9523233 C T PAK7 Silent p.K668K 0.22 TCGA-60-2721-01 21 11039377 11039377 C A BAGE2 RNA 0.05 TCGA-60-2721-01 21 11047527 11047527 A C BAGE2 RNA 0.03 TCGA-60-2721-01 21 40250479 40250479 G C AF064858.6 RNA 0.29 TCGA-60-2721-01 22 23248738 23248738 T G IGLC3 Silent p.P76P 0.11 TCGA-60-2721-01 22 25150777 25150777 C G PIWIL3 Missense_Mutation p.K249N 0.09 tolerated(0.83) benign(0.001) TCGA-60-2721-01 22 30572217 30572217 A G HORMAD2 3'UTR 0.17 TCGA-60-2721-01 22 31013339 31013339 G C TCN2 Missense_Mutation p.E321D 0.09 tolerated(0.16) benign(0.024) TCGA-60-2721-01 22 35947939 35947939 C T RASD2 Missense_Mutation p.R221C 0.13 deleterious(0) possibly_damaging(0.676) TCGA-60-2721-01 22 45789518 45789518 G A SMC1B Missense_Mutation p.S514F 0.06 tolerated(0.18) possibly_damaging(0.546) TCGA-60-2721-01 2 10136059 10136059 C A GRHL1 Missense_Mutation p.P518T 0.18 deleterious(0.04) benign(0.005) TCGA-60-2721-01 2 10140880 10140880 C G GRHL1 3'UTR 0.19 TCGA-60-2721-01 2 11332396 11332396 C G ROCK2 Missense_Mutation p.K1347N 0.03 deleterious(0) probably_damaging(0.981) TCGA-60-2721-01 2 116572478 116572478 A G DPP10 Missense_Mutation p.S608G 0.26 tolerated(0.13) possibly_damaging(0.516) TCGA-60-2721-01 2 132277185 132277185 C T AC093838.4 RNA 0.25 TCGA-60-2721-01 2 155158078 155158078 G C GALNT13 Missense_Mutation p.D378H 0.23 deleterious(0.04) benign(0.021) TCGA-60-2721-01 2 172944926 172944926 C T METAP1D Silent p.D307D 0.24 TCGA-60-2721-01 2 17699103 17699103 C G RAD51AP2 Missense_Mutation p.D194H 0.04 deleterious(0.01) probably_damaging(0.948) TCGA-60-2721-01 2 17830817 17830817 G A VSNL1 Silent p.L101L 0.05 TCGA-60-2721-01 2 179459353 179459353 C G TTN Missense_Mutation p.D19290H 0.15 TCGA-60-2721-01 2 179641808 179641808 A G TTN Intron 0.31 TCGA-60-2721-01 2 202122828 202122828 C G CASP8 5'UTR 0.12 TCGA-60-2721-01 2 207508997 207508997 C T AC010731.4 RNA 0.20 TCGA-60-2721-01 2 224640635 224640635 C G AP1S3 Missense_Mutation p.D92H 0.16 deleterious(0) probably_damaging(1) TCGA-60-2721-01 2 225684224 225684224 C G DOCK10 Missense_Mutation p.R1069P 0.05 deleterious(0) probably_damaging(0.999) TCGA-60-2721-01 2 227779062 227779062 A G RHBDD1 Missense_Mutation p.D284G 0.24 deleterious(0.04) possibly_damaging(0.859) TCGA-60-2721-01 2 68384448 68384448 G C WDR92 Missense_Mutation p.T43S 0.18 tolerated(0.17) benign(0.003) TCGA-60-2721-01 2 68765102 68765102 T C APLF Silent p.L301L 0.24 TCGA-60-2721-01 2 71654268 71654268 G C ZNF638 Missense_Mutation p.E1757Q 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-60-2721-01 2 89185584 89185584 C T IGKV4-1 Missense_Mutation p.S93F 0.12 deleterious(0.01) probably_damaging(1) TCGA-60-2721-01 2 98872590 98872590 C T VWA3B Silent p.R932R 0.19 TCGA-60-2721-01 3 100174686 100174686 G A LNP1 Silent p.K151K 0.04 TCGA-60-2721-01 3 122928209 122928209 G C SEC22A Missense_Mutation p.D49H 0.14 deleterious(0.02) probably_damaging(0.99) TCGA-60-2721-01 3 145912979 145912979 C G PLSCR4 Missense_Mutation p.D293H 0.05 deleterious(0) probably_damaging(0.941) TCGA-60-2721-01 3 151532019 151532019 C G AADAC Silent p.L23L 0.14 TCGA-60-2721-01 3 156742612 156742612 C G LEKR1 Missense_Mutation p.L423V 0.06 tolerated(0.07) possibly_damaging(0.567) TCGA-60-2721-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.12 deleterious(0.04) probably_damaging(0.96) TCGA-60-2721-01 3 186338508 186338508 A T AHSG Missense_Mutation p.H298L 0.15 tolerated(0.83) benign(0.01) TCGA-60-2721-01 4 123268789 123268789 C T KIAA1109 Silent p.S4328S 0.53 TCGA-60-2721-01 4 13578553 13578553 C T BOD1L1 Missense_Mutation p.E2983K 0.05 benign(0.076) TCGA-60-2721-01 4 174169356 174169356 C T GALNT7 Nonsense_Mutation p.Q118* 0.05 TCGA-60-2721-01 4 17805656 17805656 C A DCAF16 Nonsense_Mutation p.E37* 0.05 TCGA-60-2721-01 4 56831872 56831872 C T CEP135 Silent p.T297T 0.37 TCGA-60-2721-01 4 57797915 57797915 C G REST Nonsense_Mutation p.S964* 0.12 TCGA-60-2721-01 4 77003223 77003223 C G ART3 Missense_Mutation p.Q106E 0.08 deleterious(0.01) possibly_damaging(0.685) TCGA-60-2721-01 4 79832290 79832290 C G BMP2K Missense_Mutation p.F863L 0.10 deleterious_low_confidence(0) unknown(0) TCGA-60-2721-01 5 112720867 112720867 C T MCC Silent p.E71E 0.12 TCGA-60-2721-01 5 137481560 137481560 G C BRD8 Missense_Mutation p.L1096V 0.14 tolerated(0.42) benign(0.023) TCGA-60-2721-01 5 140789485 140789485 C T PCDHGB6 Silent p.S572S 0.14 TCGA-60-2721-01 5 14758688 14758688 G C ANKH Nonsense_Mutation p.Y111* 0.26 TCGA-60-2721-01 5 172571553 172571553 C T BNIP1 Missense_Mutation p.A2V 0.12 deleterious_low_confidence(0) possibly_damaging(0.622) TCGA-60-2721-01 5 33576787 33576787 G A ADAMTS12 Missense_Mutation p.S1115L 0.05 tolerated(0.05) benign(0.004) TCGA-60-2721-01 5 40909616 40909616 C A C7 5'UTR 0.29 TCGA-60-2721-01 6 111697394 111697394 C T REV3L Missense_Mutation p.E722K 0.09 deleterious(0.01) benign(0.22) TCGA-60-2721-01 6 132939033 132939033 C A TAAR2 Silent p.S104S 0.31 TCGA-60-2721-01 6 153076420 153076420 G A VIP Missense_Mutation p.D83N 0.05 deleterious(0.01) possibly_damaging(0.901) TCGA-60-2721-01 6 159206345 159206345 G A EZR Nonsense_Mutation p.Q155* 0.06 TCGA-60-2721-01 6 160969590 160969590 C T LPA Missense_Mutation p.R1692Q 0.18 tolerated(0.38) benign(0.014) TCGA-60-2721-01 6 167754034 167754034 T A TTLL2 Missense_Mutation p.L216I 0.21 deleterious(0.03) possibly_damaging(0.795) TCGA-60-2721-01 6 27879971 27879971 G A OR2B2 Silent p.L43L 0.38 TCGA-60-2721-01 6 29012028 29012028 G A OR2W1 Missense_Mutation p.H309Y 0.07 tolerated(1) benign(0) TCGA-60-2721-01 6 31839141 31839141 G A SLC44A4 Silent p.I217I 0.07 TCGA-60-2721-01 6 42237184 42237184 G C TRERF1 Missense_Mutation p.Q49E 0.17 tolerated_low_confidence(0.08) benign(0.257) TCGA-60-2721-01 6 42974685 42974685 A T PPP2R5D Missense_Mutation p.Q120L 0.07 deleterious(0) benign(0.17) TCGA-60-2721-01 6 51907784 51907784 A C PKHD1 Silent p.V990V 0.34 TCGA-60-2721-01 6 64394489 64394489 C T PHF3 Missense_Mutation p.S289L 0.19 tolerated_low_confidence(0.08) benign(0.004) TCGA-60-2721-01 6 69349286 69349286 G A BAI3 Missense_Mutation p.C240Y 0.34 tolerated(0.08) probably_damaging(0.962) TCGA-60-2721-01 6 76633407 76633407 C T IMPG1 Missense_Mutation p.E754K 0.42 tolerated_low_confidence(1) benign(0) TCGA-60-2721-01 6 89814856 89814856 C T SRSF12 Missense_Mutation p.R133Q 0.07 deleterious(0.01) benign(0.005) TCGA-60-2721-01 7 100230713 100230713 C A TFR2 Nonsense_Mutation p.E254* 0.25 TCGA-60-2721-01 7 100246364 100246364 C T ACTL6B Missense_Mutation p.V184I 0.19 tolerated(0.07) benign(0.178) TCGA-60-2721-01 7 123143163 123143163 A G IQUB Silent p.D234D 0.03 TCGA-60-2721-01 7 140107469 140107469 G A RAB19 Missense_Mutation p.R8K 0.07 tolerated(0.97) benign(0.002) TCGA-60-2721-01 7 142568388 142568388 C T EPHB6 Silent p.F969F 0.21 TCGA-60-2721-01 7 148873639 148873639 C G ZNF398 Silent p.S247S 0.18 TCGA-60-2721-01 7 151921693 151921693 T - KMT2C Frame_Shift_Del p.V996Wfs*35 0.17 TCGA-60-2721-01 7 155094556 155094556 G A INSIG1 Missense_Mutation p.M268I 0.22 deleterious(0.01) probably_damaging(0.985) TCGA-60-2721-01 7 20784946 20784946 G T ABCB5 Missense_Mutation p.C1105F 0.30 deleterious(0.02) probably_damaging(0.924) TCGA-60-2721-01 7 21640404 21640404 C T DNAH11 Silent p.H1037H 0.22 TCGA-60-2721-01 7 31124408 31124408 C T ADCYAP1R1 Silent p.L165L 0.07 TCGA-60-2721-01 7 33059262 33059262 G C NT5C3A Missense_Mutation p.S177C 0.06 deleterious(0) possibly_damaging(0.475) TCGA-60-2721-01 7 35242047 35242047 C T TBX20 Missense_Mutation p.V447I 0.35 deleterious_low_confidence(0) possibly_damaging(0.785) TCGA-60-2721-01 7 38725545 38725545 G A FAM183B Missense_Mutation p.R21W 0.25 tolerated(0.19) benign(0.034) TCGA-60-2721-01 7 47453597 47453597 T C TNS3 Splice_Site p.X196_splice 0.21 TCGA-60-2721-01 7 81634815 81634815 T C CACNA2D1 Splice_Site p.X506_splice 0.33 TCGA-60-2721-01 7 83277873 83277873 C G SEMA3E 5'UTR 0.30 TCGA-60-2721-01 7 92938250 92938250 A - CCDC132 Frame_Shift_Del p.S583Vfs*7 0.26 TCGA-60-2721-01 8 103266726 103266726 G C UBR5 Nonsense_Mutation p.S2735* 0.05 TCGA-60-2721-01 8 110451186 110451186 C T PKHD1L1 Missense_Mutation p.A1274V 0.16 tolerated(0.49) benign(0.007) TCGA-60-2721-01 8 113277764 113277764 A T CSMD3 Missense_Mutation p.D3188E 0.07 tolerated(0.12) benign(0.026) TCGA-60-2721-01 8 134025901 134025901 G C TG Missense_Mutation p.V2152L 0.22 tolerated(0.05) benign(0.027) TCGA-60-2721-01 8 144996989 144996989 C A PLEC Missense_Mutation p.A2507S 0.43 benign(0.358) TCGA-60-2721-01 8 37699012 37699012 C T GPR124 Silent p.C1052C 0.27 TCGA-60-2721-01 8 49833898 49833898 C G SNAI2 5'UTR 0.14 TCGA-60-2721-01 8 6682699 6682699 C T XKR5 RNA 0.09 TCGA-60-2721-01 8 95879535 95879535 A G INTS8 Missense_Mutation p.H795R 0.22 deleterious(0.01) possibly_damaging(0.607) TCGA-60-2721-01 8 97263324 97263324 C G MTERFD1 Splice_Site p.X163_splice 0.21 TCGA-60-2721-01 9 110094009 110094009 G A RAD23B 3'UTR 0.16 TCGA-60-2721-01 9 117240811 117240811 C A DFNB31 Intron 0.42 TCGA-60-2721-01 9 131004537 131004537 C G DNM1 Missense_Mutation p.I528M 0.38 deleterious(0.04) possibly_damaging(0.545) TCGA-60-2721-01 9 132084879 132084879 G T C9orf106 RNA 0.29 TCGA-60-2721-01 9 132084881 132084881 G T C9orf106 RNA 0.30 TCGA-60-2721-01 9 135804270 135804270 G A TSC1 5'UTR 0.29 TCGA-60-2721-01 9 135945996 135945996 A G CEL Missense_Mutation p.T482A 0.29 tolerated(0.15) benign(0.014) TCGA-60-2721-01 9 136029232 136029232 T C GBGT1 Missense_Mutation p.Y259C 0.42 tolerated(0.07) probably_damaging(0.988) TCGA-60-2721-01 9 35800750 35800750 G A NPR2 Silent p.T421T 0.06 TCGA-60-2721-01 9 84609040 84609040 C T SPATA31D1 Nonsense_Mutation p.Q1219* 0.08 TCGA-60-2721-01 X 111697978 111697978 T C ZCCHC16 Missense_Mutation p.S8P 0.10 tolerated(1) benign(0) TCGA-60-2721-01 X 122613996 122613996 G C GRIA3 Intron 0.51 TCGA-60-2721-01 X 123514551 123514551 C A TENM1 Missense_Mutation p.E2678D 0.53 tolerated(0.09) possibly_damaging(0.767) TCGA-60-2721-01 X 128946745 128946745 C A ZDHHC9 Silent p.L242L 0.51 TCGA-60-2721-01 X 138667301 138667301 T C MCF2 Missense_Mutation p.E966G 0.06 deleterious(0.04) benign(0.003) TCGA-60-2721-01 X 49021258 49021258 A T MAGIX Missense_Mutation p.S113C 0.58 tolerated(0.28) benign(0) TCGA-60-2721-01 X 54959859 54959859 C G PFKFB1 Missense_Mutation p.D465H 0.09 benign(0.19) TCGA-60-2721-01 X 66931320 66931320 G A AR Silent p.E654E 0.42 TCGA-60-2721-01 X 90690734 90690734 C A PABPC5 Missense_Mutation p.P53Q 0.47 tolerated(0.09) benign(0.115) TCGA-60-2722-01 10 118215325 118215325 G T PNLIPRP3 Missense_Mutation p.G183V 0.26 deleterious(0.02) probably_damaging(0.956) TCGA-60-2722-01 10 118385573 118385573 C A PNLIPRP2 Missense_Mutation p.D107E 0.46 tolerated(0.17) benign(0.007) TCGA-60-2722-01 10 11911467 11911467 A T PROSER2 Intron 0.57 TCGA-60-2722-01 10 12043711 12043711 C T UPF2 Missense_Mutation p.A540T 0.11 tolerated(0.59) benign(0.008) TCGA-60-2722-01 10 12123485 12123485 G T DHTKD1 Missense_Mutation p.A57S 0.55 tolerated(0.4) benign(0.004) TCGA-60-2722-01 10 129350859 129350859 G C NPS Missense_Mutation p.G76R 0.23 deleterious(0) probably_damaging(1) TCGA-60-2722-01 10 134563057 134563057 G T INPP5A Missense_Mutation p.A257S 0.12 tolerated(0.76) probably_damaging(0.918) TCGA-60-2722-01 10 135203156 135203156 A C PAOX Missense_Mutation p.T433P 0.53 deleterious(0.02) probably_damaging(0.921) TCGA-60-2722-01 10 16967399 16967399 A T CUBN Missense_Mutation p.S2163T 0.47 deleterious(0.03) probably_damaging(0.951) TCGA-60-2722-01 10 18250781 18250781 C A SLC39A12 Missense_Mutation p.S178Y 0.30 deleterious(0.02) possibly_damaging(0.617) TCGA-60-2722-01 10 18280105 18280105 C A SLC39A12 Missense_Mutation p.A432D 0.51 tolerated(0.27) benign(0.049) TCGA-60-2722-01 10 25886785 25886785 C T GPR158 Missense_Mutation p.R744W 0.26 deleterious(0) possibly_damaging(0.896) TCGA-60-2722-01 10 27703227 27703227 G T PTCHD3 5'UTR 0.41 TCGA-60-2722-01 10 31810466 31810466 C T ZEB1 Missense_Mutation p.L736F 0.27 deleterious(0) probably_damaging(0.998) TCGA-60-2722-01 10 32106816 32106816 T A ARHGAP12 Splice_Site p.X545_splice 0.24 TCGA-60-2722-01 10 48414071 48414071 T C GDF2 Missense_Mutation p.K266R 0.23 tolerated(0.32) benign(0.015) TCGA-60-2722-01 10 49392891 49392891 T C FRMPD2 Missense_Mutation p.Q798R 0.22 tolerated(0.2) benign(0.338) TCGA-60-2722-01 10 61831882 61831882 C A ANK3 Missense_Mutation p.M2919I 0.44 benign(0.003) TCGA-60-2722-01 10 64944447 64944447 T A JMJD1C Missense_Mutation p.E2294D 0.29 tolerated(0.56) benign(0.05) TCGA-60-2722-01 10 7218019 7218019 C T SFMBT2 Silent p.L639L 0.52 TCGA-60-2722-01 10 75056899 75056899 G T TTC18 Nonsense_Mutation p.Y585* 0.28 TCGA-60-2722-01 10 75526283 75526283 C T SEC24C Missense_Mutation p.R595W 0.31 deleterious(0) probably_damaging(0.993) TCGA-60-2722-01 10 87373339 87373339 C A GRID1 Missense_Mutation p.G809V 0.30 deleterious(0) possibly_damaging(0.864) TCGA-60-2722-01 10 87373340 87373340 C A GRID1 Missense_Mutation p.G809C 0.29 deleterious(0.03) benign(0.126) TCGA-60-2722-01 10 95718452 95718452 C G PIPSL RNA 0.64 TCGA-60-2722-01 11 117978579 117978579 G A TMPRSS4 Silent p.R177R 0.82 TCGA-60-2722-01 11 124310284 124310284 C - OR8B8 Frame_Shift_Del p.G233Afs*13 0.54 TCGA-60-2722-01 11 26743259 26743259 C A SLC5A12 Translation_Start_Site p.M1? 0.43 deleterious_low_confidence(0.03) possibly_damaging(0.885) TCGA-60-2722-01 11 31453981 31453981 T C IMMP1L 3'UTR 0.31 TCGA-60-2722-01 11 47259387 47259387 G A DDB2 Splice_Site p.X342_splice 0.76 TCGA-60-2722-01 11 48145189 48145189 G T PTPRJ Missense_Mutation p.R214L 0.75 tolerated(0.06) benign(0.081) TCGA-60-2722-01 11 5536531 5536531 G T UBQLNL Missense_Mutation p.P381T 0.46 deleterious(0.01) possibly_damaging(0.476) TCGA-60-2722-01 11 55606581 55606581 G T OR5D16 Silent p.A118A 0.38 TCGA-60-2722-01 11 55761527 55761527 G T OR5F1 Missense_Mutation p.T192K 0.29 deleterious(0) probably_damaging(0.987) TCGA-60-2722-01 11 6023660 6023660 G A OR56A4 Missense_Mutation p.S240F 0.14 deleterious(0.01) possibly_damaging(0.847) TCGA-60-2722-01 11 6261348 6261348 C T CNGA4 Silent p.R108R 0.49 TCGA-60-2722-01 11 65786339 65786339 C T CATSPER1 Silent p.L720L 0.37 TCGA-60-2722-01 11 66460066 66460075 GGATCCACTG - SPTBN2 Frame_Shift_Del p.Q1708Rfs*19 0.46 TCGA-60-2722-01 11 66816052 66816052 C G SYT12 Intron 0.38 TCGA-60-2722-01 12 101336160 101336160 G A ANO4 Silent p.V66V 0.57 TCGA-60-2722-01 12 102064101 102064101 C G MYBPC1 Missense_Mutation p.P836A 0.18 tolerated(0.47) benign(0) TCGA-60-2722-01 12 111342414 111342414 C A CCDC63 Missense_Mutation p.N455K 0.23 tolerated(0.17) probably_damaging(1) TCGA-60-2722-01 12 112622092 112622092 C T HECTD4 Missense_Mutation p.E3414K 0.26 possibly_damaging(0.725) TCGA-60-2722-01 12 124397757 124397757 C A DNAH10 Missense_Mutation p.A3298D 0.65 benign(0.033) TCGA-60-2722-01 12 125294743 125294743 C T SCARB1 Silent p.E273E 0.16 TCGA-60-2722-01 12 125397880 125397880 C A UBC Silent p.V146V 0.56 TCGA-60-2722-01 12 13720031 13720031 G A GRIN2B Silent p.F842F 0.61 TCGA-60-2722-01 12 21690000 21690000 C T GYS2 Missense_Mutation p.R667K 0.62 tolerated(0.49) benign(0.159) TCGA-60-2722-01 12 23998945 23998945 C T SOX5 Missense_Mutation p.M151I 0.28 deleterious(0.01) probably_damaging(0.943) TCGA-60-2722-01 12 432368 432368 G A KDM5A Missense_Mutation p.R719C 0.51 deleterious(0) probably_damaging(0.997) TCGA-60-2722-01 12 44917246 44917246 C A NELL2 Missense_Mutation p.G659V 0.55 tolerated(0.06) probably_damaging(0.999) TCGA-60-2722-01 12 51252600 51252600 C T TMPRSS12 Missense_Mutation p.T139I 0.25 tolerated(0.19) benign(0.065) TCGA-60-2722-01 12 51584082 51584082 C T POU6F1 Missense_Mutation p.R285Q 0.53 deleterious(0) possibly_damaging(0.62) TCGA-60-2722-01 12 52884517 52884640 12:52884517-52884640 - KRT6A large deletion p.X305_splice 0.21 TCGA-60-2722-01 12 55615466 55615466 C T OR10A7 Missense_Mutation p.R220C 0.29 tolerated(0.22) benign(0.017) TCGA-60-2722-01 12 56711394 56711394 C A PAN2 Nonstop_Mutation p.*1203Lext*41 0.52 TCGA-60-2722-01 12 57144981 57144981 T A PRIM1 Splice_Site p.X35_splice 0.38 TCGA-60-2722-01 12 58193650 58193651 AT - AVIL Frame_Shift_Del p.Y758Lfs*16 0.25 TCGA-60-2722-01 12 6601442 6601442 G A MRPL51 Nonsense_Mutation p.R128* 0.22 TCGA-60-2722-01 12 66638391 66638391 T A IRAK3 Missense_Mutation p.L338Q 0.06 deleterious(0.03) probably_damaging(0.988) TCGA-60-2722-01 12 70048959 70048959 C T BEST3 Missense_Mutation p.E579K 0.63 tolerated_low_confidence(0.46) benign(0.021) TCGA-60-2722-01 12 70934690 70934690 T C PTPRB Missense_Mutation p.I1848V 0.15 tolerated(0.12) benign(0.124) TCGA-60-2722-01 12 8290999 8290999 A G CLEC4A 3'UTR 0.56 TCGA-60-2722-01 13 43358264 43358264 C T FAM216B Nonsense_Mutation p.R21* 0.38 TCGA-60-2722-01 13 84455097 84455097 G C SLITRK1 Silent p.L182L 0.73 TCGA-60-2722-01 14 106208309 106208309 C T IGHG1 Silent p.L197L 0.41 TCGA-60-2722-01 14 21360008 21360008 C A RNASE3 Silent p.R55R 0.47 TCGA-60-2722-01 14 23420834 23420834 T C HAUS4 Missense_Mutation p.Q132R 0.48 tolerated(0.54) benign(0.003) TCGA-60-2722-01 14 23549970 23549970 C A ACIN1 Nonsense_Mutation p.E250* 0.39 TCGA-60-2722-01 14 23777252 23777252 C T BCL2L2-PABPN1 Silent p.N92N 0.35 TCGA-60-2722-01 14 39900916 39900916 C G FBXO33 Missense_Mutation p.G151R 0.36 tolerated_low_confidence(0.51) probably_damaging(0.956) TCGA-60-2722-01 14 47351380 47351380 C T MDGA2 Silent p.G761G 0.31 TCGA-60-2722-01 14 53066881 53066881 T C GPR137C Missense_Mutation p.V180A 0.43 deleterious(0.04) probably_damaging(0.932) TCGA-60-2722-01 14 67850206 67850206 T C EIF2S1 3'UTR 0.21 TCGA-60-2722-01 14 75052758 75052758 C A LTBP2 Missense_Mutation p.R210L 0.50 deleterious(0) probably_damaging(0.998) TCGA-60-2722-01 14 92555162 92555162 C T ATXN3 Splice_Site p.X130_splice 0.38 TCGA-60-2722-01 15 20666592 20666592 C A HERC2P3 RNA 0.18 TCGA-60-2722-01 15 23931814 23931814 C T NDN Missense_Mutation p.R184H 0.41 tolerated(0.2) benign(0.005) TCGA-60-2722-01 15 25442622 25442622 G T SNORD115-14 3'Flank 0.50 TCGA-60-2722-01 15 25451488 25451488 C T SNORD115-20 RNA 0.45 TCGA-60-2722-01 15 32929724 32929724 C T ARHGAP11A Missense_Mutation p.S917L 0.42 deleterious(0.03) benign(0.086) TCGA-60-2722-01 15 34649516 34649516 C A NUTM1 Silent p.R1075R 0.27 TCGA-60-2722-01 15 59971939 59971939 C T BNIP2 Silent p.V170V 0.25 TCGA-60-2722-01 15 62352626 62352626 G C VPS13C 5'UTR 0.68 TCGA-60-2722-01 15 62944323 62944323 T C TLN2 Silent p.C118C 0.44 TCGA-60-2722-01 15 79749790 79749790 G T KIAA1024 Missense_Mutation p.G434V 0.49 deleterious(0.03) benign(0.013) TCGA-60-2722-01 15 81585347 81585347 C A IL16 Missense_Mutation p.S624Y 0.45 deleterious(0.01) benign(0.013) TCGA-60-2722-01 15 89398124 89398124 G A ACAN Missense_Mutation p.E770K 0.35 deleterious(0.01) benign(0.001) TCGA-60-2722-01 16 15808764 15808764 A G MYH11 Splice_Site p.X1936_splice 0.16 TCGA-60-2722-01 16 21170713 21170713 G T DNAH3 Missense_Mutation p.P17Q 0.45 tolerated_low_confidence(0.1) benign(0) TCGA-60-2722-01 16 2167522 2167522 G A PKD1 Silent p.A451A 0.39 TCGA-60-2722-01 16 21983385 21983385 G A UQCRC2 Missense_Mutation p.S303N 0.38 tolerated(0.07) benign(0.003) TCGA-60-2722-01 16 27772789 27772789 T G KIAA0556 Silent p.T1229T 0.45 TCGA-60-2722-01 16 2812332 2812332 G T SRRM2 Missense_Mutation p.R601S 0.37 unknown(0) TCGA-60-2722-01 16 28507309 28507309 G C APOBR Missense_Mutation p.G316A 0.29 tolerated(0.5) benign(0.024) TCGA-60-2722-01 16 3656624 3656624 C T SLX4 Missense_Mutation p.R204H 0.50 deleterious(0) probably_damaging(0.944) TCGA-60-2722-01 16 49670765 49670765 C G ZNF423 Missense_Mutation p.Q766H 0.45 tolerated(0.08) possibly_damaging(0.453) TCGA-60-2722-01 16 49672375 49672375 C A ZNF423 Missense_Mutation p.G230C 0.37 deleterious(0.01) probably_damaging(1) TCGA-60-2722-01 16 50733863 50733863 A T NOD2 Missense_Mutation p.R180W 0.53 deleterious(0) probably_damaging(0.994) TCGA-60-2722-01 16 51172604 51172604 G A SALL1 Missense_Mutation p.L1177F 0.33 deleterious(0) benign(0.012) TCGA-60-2722-01 16 53302009 53302009 G T CHD9 Missense_Mutation p.G1563V 0.50 probably_damaging(0.998) TCGA-60-2722-01 16 53720458 53720458 C G RPGRIP1L Missense_Mutation p.Q221H 0.45 tolerated(0.22) benign(0.009) TCGA-60-2722-01 16 58583753 58583753 G A CNOT1 Missense_Mutation p.S1131L 0.43 deleterious(0) benign(0.211) TCGA-60-2722-01 16 67314219 67314219 C G PLEKHG4 Nonsense_Mutation p.S91* 0.42 TCGA-60-2722-01 16 68592426 68592426 G C ZFP90 Missense_Mutation p.E71Q 0.32 tolerated(0.11) possibly_damaging(0.649) TCGA-60-2722-01 16 779062 779062 C A HAGHL Silent p.R218R 0.38 TCGA-60-2722-01 16 84103622 84103622 T G MBTPS1 Missense_Mutation p.T602P 0.39 tolerated(0.19) benign(0.065) TCGA-60-2722-01 16 85100945 85100945 G T KIAA0513 Nonsense_Mutation p.E90* 0.32 TCGA-60-2722-01 16 89804133 89804133 G A FANCA 3'UTR 0.47 TCGA-60-2722-01 16 89836993 89836993 G A FANCA Missense_Mutation p.S734F 0.38 deleterious(0) possibly_damaging(0.485) TCGA-60-2722-01 17 18212202 18212202 A C TOP3A Nonsense_Mutation p.Y78* 0.50 TCGA-60-2722-01 17 27959607 27959607 C T SSH2 Missense_Mutation p.E842K 0.81 deleterious_low_confidence(0.04) benign(0.199) TCGA-60-2722-01 17 33951435 33951435 C T AP2B1 Missense_Mutation p.A182V 0.49 deleterious(0.03) probably_damaging(0.959) TCGA-60-2722-01 17 37357551 37357551 G A RPL19 Missense_Mutation p.E31K 0.14 tolerated(0.07) benign(0.063) TCGA-60-2722-01 17 37627540 37627540 G A CDK12 Silent p.E485E 0.58 TCGA-60-2722-01 17 38189317 38189317 G A MED24 Missense_Mutation p.R272C 0.07 deleterious(0) probably_damaging(0.963) TCGA-60-2722-01 17 44108963 44108963 C A KANSL1 Missense_Mutation p.R1066L 0.91 deleterious(0.01) probably_damaging(0.915) TCGA-60-2722-01 17 48600955 48600955 C T MYCBPAP Intron 0.90 TCGA-60-2722-01 17 67513001 67513001 C A MAP2K6 Missense_Mutation p.P30H 0.89 deleterious(0) possibly_damaging(0.738) TCGA-60-2722-01 17 72926475 72926475 G A OTOP2 Missense_Mutation p.E249K 0.88 deleterious(0) probably_damaging(0.999) TCGA-60-2722-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.79 deleterious(0) probably_damaging(1) TCGA-60-2722-01 17 78085891 78085891 C T GAA Silent p.A582A 0.84 TCGA-60-2722-01 17 8215492 8215492 A T ARHGEF15 Missense_Mutation p.E45D 0.83 tolerated_low_confidence(0.27) benign(0.001) TCGA-60-2722-01 18 14757952 14757952 G T ANKRD30B Splice_Site p.X252_splice 0.27 TCGA-60-2722-01 18 19154258 19154258 T A ESCO1 Nonsense_Mutation p.K183* 0.05 TCGA-60-2722-01 18 2937714 2937714 C A LPIN2 Missense_Mutation p.V382L 0.49 tolerated(0.8) benign(0.001) TCGA-60-2722-01 18 5428401 5428401 G T EPB41L3 Silent p.R326R 0.47 TCGA-60-2722-01 18 63548152 63548152 T C CDH7 3'UTR 0.49 TCGA-60-2722-01 18 66513560 66513560 G T CCDC102B Missense_Mutation p.A280S 0.33 tolerated(0.82) benign(0.007) TCGA-60-2722-01 18 7037633 7037633 G T LAMA1 Missense_Mutation p.Q561K 0.41 tolerated(0.58) benign(0.001) TCGA-60-2722-01 18 7037634 7037634 C T LAMA1 Missense_Mutation p.M560I 0.40 tolerated(0.48) benign(0.002) TCGA-60-2722-01 18 77227600 77227600 A T NFATC1 Intron 0.19 TCGA-60-2722-01 18 77875529 77875529 T G ADNP2 Missense_Mutation p.L35R 0.44 deleterious(0) possibly_damaging(0.89) TCGA-60-2722-01 19 10421116 10421116 C G FDX1L 3'UTR 0.40 TCGA-60-2722-01 19 10600417 10600417 C A KEAP1 Missense_Mutation p.G480W 0.49 deleterious(0) probably_damaging(1) TCGA-60-2722-01 19 11510944 11510944 G T RGL3 Missense_Mutation p.P505Q 0.52 deleterious(0.01) probably_damaging(1) TCGA-60-2722-01 19 11762490 11762490 T C ZNF833P RNA 0.62 TCGA-60-2722-01 19 12383910 12383910 T A ZNF44 Missense_Mutation p.H435L 0.54 deleterious(0) probably_damaging(0.998) TCGA-60-2722-01 19 21608586 21608586 G C ZNF493 3'UTR 0.33 TCGA-60-2722-01 19 2337594 2337594 C A SPPL2B RNA 0.58 TCGA-60-2722-01 19 30934929 30934929 G C ZNF536 Missense_Mutation p.G154R 0.36 deleterious(0.04) probably_damaging(1) TCGA-60-2722-01 19 31040372 31040372 T A ZNF536 Silent p.L1282L 0.38 TCGA-60-2722-01 19 35424541 35424541 G T ZNF30 Missense_Mutation p.R58L 0.47 tolerated(0.5) benign(0) TCGA-60-2722-01 19 35837481 35837481 A C CD22 Missense_Mutation p.N809H 0.32 deleterious(0) probably_damaging(1) TCGA-60-2722-01 19 36277800 36277800 C T ARHGAP33 Silent p.L649L 0.14 TCGA-60-2722-01 19 36831374 36831374 A G ZFP14 Missense_Mutation p.Y452H 0.18 deleterious(0.05) probably_damaging(0.999) TCGA-60-2722-01 19 38189345 38189345 A G ZNF607 Missense_Mutation p.C563R 0.51 deleterious(0) probably_damaging(1) TCGA-60-2722-01 19 42187994 42187994 G T CEACAM7 Nonsense_Mutation p.S143* 0.39 TCGA-60-2722-01 19 44891930 44891930 G T ZNF285 Silent p.P159P 0.40 TCGA-60-2722-01 19 45899676 45899676 C T PPP1R13L Missense_Mutation p.R244Q 0.36 tolerated(0.18) possibly_damaging(0.791) TCGA-60-2722-01 19 46355645 46355645 T C SYMPK Splice_Site p.X76_splice 0.42 TCGA-60-2722-01 19 46834442 46834442 A T HIF3A Missense_Mutation p.D581V 0.33 tolerated_low_confidence(0.08) benign(0.014) TCGA-60-2722-01 19 49107101 49107101 C T FAM83E Missense_Mutation p.A276T 0.39 tolerated(0.29) benign(0.104) TCGA-60-2722-01 19 49878320 49878320 C A DKKL1 3'UTR 0.47 TCGA-60-2722-01 19 52659713 52659713 T C ZNF836 Missense_Mutation p.H408R 0.03 deleterious(0) probably_damaging(0.96) TCGA-60-2722-01 19 54606177 54606177 G T NDUFA3 5'UTR 0.35 TCGA-60-2722-01 19 54940526 54940526 G A TTYH1 Missense_Mutation p.G259D 0.43 deleterious(0.01) benign(0.084) TCGA-60-2722-01 19 55559778 55559778 T C RDH13 Missense_Mutation p.K193E 0.40 tolerated(0.39) benign(0.075) TCGA-60-2722-01 19 55743015 55743015 G A PPP6R1 Silent p.P776P 0.92 TCGA-60-2722-01 19 57175617 57175617 T C ZNF835 Missense_Mutation p.Q317R 0.33 tolerated(0.3) benign(0.323) TCGA-60-2722-01 19 57669821 57669821 G A DUXA Missense_Mutation p.R105C 0.39 deleterious(0.02) probably_damaging(0.987) TCGA-60-2722-01 19 57910184 57910184 G T ZNF548 Nonsense_Mutation p.E189* 0.39 TCGA-60-2722-01 19 58549521 58549521 G T ZSCAN1 Missense_Mutation p.C106F 0.50 tolerated(0.06) possibly_damaging(0.847) TCGA-60-2722-01 19 59028370 59028370 T A ZBTB45 Missense_Mutation p.E224V 0.25 tolerated(0.13) benign(0.383) TCGA-60-2722-01 19 6833552 6833552 C G VAV1 Missense_Mutation p.Q542E 0.57 deleterious(0) benign(0.404) TCGA-60-2722-01 19 9058161 9058161 A T MUC16 Missense_Mutation p.L9762H 0.22 unknown(0) TCGA-60-2722-01 19 9075886 9075886 C T MUC16 Missense_Mutation p.G3854R 0.48 unknown(0) TCGA-60-2722-01 19 9089841 9089841 C A MUC16 Silent p.T658T 0.47 TCGA-60-2722-01 19 9236952 9236952 G A OR7G3 Silent p.V225V 0.29 TCGA-60-2722-01 19 9453741 9453741 G T ZNF559 Silent p.V538V 0.32 TCGA-60-2722-01 1 103380351 103380351 C G COL11A1 Missense_Mutation p.R1278T 0.26 unknown(0) TCGA-60-2722-01 1 107691113 107691113 A G NTNG1 5'UTR 0.31 TCGA-60-2722-01 1 114269168 114269168 C A PHTF1 Missense_Mutation p.M120I 0.54 tolerated(0.4) benign(0.005) TCGA-60-2722-01 1 12907697 12907697 G C HNRNPCL1 Nonsense_Mutation p.S149* 0.27 TCGA-60-2722-01 1 14149789 14149789 T C PRDM2 3'UTR 0.30 TCGA-60-2722-01 1 145112467 145112467 G C SEC22B RNA 0.05 TCGA-60-2722-01 1 1459303 1459303 A T ATAD3A Missense_Mutation p.M398L 0.51 tolerated(0.6) benign(0.002) TCGA-60-2722-01 1 152283396 152283396 A T FLG Silent p.S1322S 0.43 TCGA-60-2722-01 1 154574628 154574628 T A ADAR Nonsense_Mutation p.K164* 0.44 TCGA-60-2722-01 1 154574810 154574810 C T ADAR Missense_Mutation p.G103E 0.44 tolerated(1) benign(0.071) TCGA-60-2722-01 1 157772251 157772251 C A FCRL1 Nonsense_Mutation p.E175* 0.50 TCGA-60-2722-01 1 158645971 158645971 G T SPTA1 Missense_Mutation p.L358M 0.51 tolerated(0.08) probably_damaging(0.968) TCGA-60-2722-01 1 158669554 158669554 C A OR6K2 Nonsense_Mutation p.E297* 0.39 TCGA-60-2722-01 1 159283910 159283910 A T OR10J3 Nonsense_Mutation p.C180* 0.41 TCGA-60-2722-01 1 161976198 161976198 G T OLFML2B Silent p.T204T 0.40 TCGA-60-2722-01 1 17017715 17017715 C A ESPNP RNA 0.28 TCGA-60-2722-01 1 176738762 176738762 G C PAPPA2 Missense_Mutation p.C1448S 0.85 deleterious(0) probably_damaging(0.998) TCGA-60-2722-01 1 196227362 196227362 T - KCNT2 Frame_Shift_Del p.N1058Ifs*3 0.52 TCGA-60-2722-01 1 196682958 196682958 G A CFH Missense_Mutation p.C477Y 0.19 deleterious(0) probably_damaging(1) TCGA-60-2722-01 1 197522230 197522230 G A DENND1B Nonsense_Mutation p.R388* 0.06 TCGA-60-2722-01 1 200587391 200587391 T C KIF14 Missense_Mutation p.N154S 0.45 tolerated(0.49) benign(0.004) TCGA-60-2722-01 1 204394051 204394051 G A PIK3C2B Nonsense_Mutation p.R1612* 0.94 TCGA-60-2722-01 1 206902762 206902762 G T MAPKAPK2 Missense_Mutation p.S169I 0.83 deleterious(0.01) benign(0.163) TCGA-60-2722-01 1 206902763 206902763 C T MAPKAPK2 Silent p.S169S 0.83 TCGA-60-2722-01 1 209785290 209785290 G A CAMK1G Missense_Mutation p.E357K 0.39 tolerated(0.36) benign(0.004) TCGA-60-2722-01 1 216270521 216270521 T A USH2A Missense_Mutation p.E1554D 0.79 benign(0.013) TCGA-60-2722-01 1 22965844 22965844 C T C1QA Nonsense_Mutation p.Q228* 0.30 TCGA-60-2722-01 1 237947973 237947973 G A RYR2 Missense_Mutation p.G4321S 0.90 possibly_damaging(0.606) TCGA-60-2722-01 1 242252955 242252955 G C PLD5 3'UTR 1.00 TCGA-60-2722-01 1 243329385 243329385 C A CEP170 Missense_Mutation p.R626I 0.92 deleterious(0.01) probably_damaging(0.961) TCGA-60-2722-01 1 243419369 243419369 G T SDCCAG8 5'UTR 0.92 TCGA-60-2722-01 1 247921531 247921531 A T OR1C1 Missense_Mutation p.Y60N 0.87 deleterious(0) probably_damaging(0.987) TCGA-60-2722-01 1 248085208 248085208 G A OR2T8 Missense_Mutation p.G297R 0.85 tolerated(0.37) possibly_damaging(0.585) TCGA-60-2722-01 1 248344163 248344163 C T OR2M2 Silent p.L292L 0.24 TCGA-60-2722-01 1 248525318 248525318 C G OR2T4 Missense_Mutation p.L146V 0.88 deleterious(0) benign(0.119) TCGA-60-2722-01 1 34042934 34042934 C T CSMD2 Missense_Mutation p.G2515D 0.24 deleterious(0) probably_damaging(0.995) TCGA-60-2722-01 1 35350614 35350614 G A DLGAP3 Silent p.F655F 0.53 TCGA-60-2722-01 1 39384929 39384929 G A RHBDL2 5'UTR 0.31 TCGA-60-2722-01 1 40007404 40007404 C G PPIEL RNA 0.62 TCGA-60-2722-01 1 40319707 40319707 T C TRIT1 Missense_Mutation p.I117V 0.66 tolerated(0.16) benign(0.383) TCGA-60-2722-01 1 45501723 45501723 A G ZSWIM5 Silent p.L715L 0.55 TCGA-60-2722-01 1 64643964 64643964 G A ROR1 Missense_Mutation p.R747Q 0.21 deleterious(0.01) probably_damaging(0.925) TCGA-60-2722-01 1 70397238 70397238 T C LRRC7 Silent p.N194N 0.20 TCGA-60-2722-01 1 79404932 79404932 C A ELTD1 Missense_Mutation p.A113S 0.31 tolerated_low_confidence(0.4) benign(0.002) TCGA-60-2722-01 1 86306958 86306958 A T COL24A1 Missense_Mutation p.Y1192N 0.49 tolerated(0.23) probably_damaging(0.921) TCGA-60-2722-01 1 98157303 98157303 C A DPYD Missense_Mutation p.E244D 0.49 deleterious(0) probably_damaging(0.981) TCGA-60-2722-01 20 13509103 13509103 T C TASP1 Missense_Mutation p.Y284C 0.31 tolerated(0.1) benign(0.106) TCGA-60-2722-01 20 34041920 34041920 C A GDF5 Intron 0.85 TCGA-60-2722-01 20 9510324 9510324 G C LAMP5 Missense_Mutation p.E234Q 0.33 deleterious(0.01) probably_damaging(1) TCGA-60-2722-01 21 10952962 10952962 T C TPTE Missense_Mutation p.S79G 0.13 tolerated(0.29) benign(0.004) TCGA-60-2722-01 21 15746135 15746135 C T HSPA13 Missense_Mutation p.G407S 0.31 deleterious(0) probably_damaging(1) TCGA-60-2722-01 21 35140086 35140086 A G ITSN1 Silent p.E332E 0.26 TCGA-60-2722-01 21 38459620 38459620 T A TTC3 Silent p.P21P 0.57 TCGA-60-2722-01 21 46330676 46330676 G A ITGB2 Silent p.L8L 0.67 TCGA-60-2722-01 21 47549367 47549367 A T COL6A2 Intron 0.43 TCGA-60-2722-01 21 48068521 48068521 G T PRMT2 Missense_Mutation p.R160L 0.24 tolerated(0.06) benign(0.015) TCGA-60-2722-01 22 16449286 16449286 G T OR11H1 Silent p.I173I 0.41 TCGA-60-2722-01 22 20861938 20861938 T A MED15 5'UTR 0.53 TCGA-60-2722-01 22 30952021 30952021 C A GAL3ST1 Missense_Mutation p.R64L 0.33 tolerated(0.32) benign(0) TCGA-60-2722-01 22 31836783 31836783 A T EIF4ENIF1 Missense_Mutation p.Y875N 0.36 deleterious(0) probably_damaging(0.994) TCGA-60-2722-01 22 38503901 38503901 C T BAIAP2L2 Missense_Mutation p.M78I 0.31 tolerated(0.28) benign(0.039) TCGA-60-2722-01 22 39917980 39917980 T A ATF4 Missense_Mutation p.H143Q 0.54 tolerated(0.47) benign(0.243) TCGA-60-2722-01 22 42003316 42003316 G A DESI1 Missense_Mutation p.H44Y 0.57 tolerated(1) benign(0.004) TCGA-60-2722-01 22 42322214 42322214 G T TNFRSF13C Silent p.G86G 0.11 TCGA-60-2722-01 22 47108146 47108146 C A CERK Nonsense_Mutation p.G142* 0.48 TCGA-60-2722-01 2 113676172 113676172 A G IL37 Missense_Mutation p.E148G 0.33 tolerated(0.12) benign(0.211) TCGA-60-2722-01 2 119732098 119732098 C T MARCO Silent p.G190G 0.56 TCGA-60-2722-01 2 125660653 125660653 G C CNTNAP5 Missense_Mutation p.V1210L 0.45 tolerated(0.49) benign(0.153) TCGA-60-2722-01 2 136499461 136499461 G A UBXN4 5'UTR 0.44 TCGA-60-2722-01 2 136566451 136566451 G T LCT Missense_Mutation p.H1156N 0.48 tolerated(0.09) probably_damaging(0.997) TCGA-60-2722-01 2 162804167 162804167 T A SLC4A10 Missense_Mutation p.L732Q 0.55 deleterious(0) probably_damaging(1) TCGA-60-2722-01 2 167760266 167760266 C A XIRP2 Silent p.R92R 0.54 TCGA-60-2722-01 2 171863104 171863104 G A TLK1 Silent p.L550L 0.53 TCGA-60-2722-01 2 177054177 177054177 G C HOXD1 Missense_Mutation p.K216N 0.54 deleterious(0) benign(0.097) TCGA-60-2722-01 2 179436113 179436113 C G TTN Missense_Mutation p.V24916L 0.26 TCGA-60-2722-01 2 179634606 179634606 A T TTN Missense_Mutation p.F2901Y 0.29 TCGA-60-2722-01 2 179664386 179664397 GTTGCCCAGCGG ATT TTN Nonsense_Mutation p.A244_Q248delinsE* 0.52 TCGA-60-2722-01 2 183822296 183822296 A G NCKAP1 Missense_Mutation p.I643T 0.54 deleterious(0) possibly_damaging(0.469) TCGA-60-2722-01 2 191840478 191840478 C T STAT1 Intron 0.23 TCGA-60-2722-01 2 206628623 206628623 G A NRP2 Missense_Mutation p.G757E 0.55 deleterious(0) probably_damaging(1) TCGA-60-2722-01 2 207603204 207603204 C G MDH1B 3'UTR 0.35 TCGA-60-2722-01 2 208866361 208866361 C T PLEKHM3 Translation_Start_Site p.M1? 0.53 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-60-2722-01 2 211447374 211447374 C A CPS1 Missense_Mutation p.Q194K 0.55 tolerated(0.37) benign(0.009) TCGA-60-2722-01 2 211502530 211502530 T G CPS1 Missense_Mutation p.L937R 0.49 tolerated(0.22) probably_damaging(0.951) TCGA-60-2722-01 2 211542717 211542717 G A CPS1 3'UTR 0.56 TCGA-60-2722-01 2 219350415 219350415 C A USP37 Missense_Mutation p.V548F 0.61 deleterious(0.01) probably_damaging(0.999) TCGA-60-2722-01 2 227915752 227915752 G T COL4A4 Missense_Mutation p.P1031T 0.56 unknown(0) TCGA-60-2722-01 2 227973298 227973298 G A COL4A4 Missense_Mutation p.P245L 0.30 benign(0.421) TCGA-60-2722-01 2 228883190 228883190 T C SPHKAP Missense_Mutation p.K794E 0.56 tolerated(0.15) benign(0.354) TCGA-60-2722-01 2 238249727 238249727 G T COL6A3 Missense_Mutation p.A2611E 0.62 unknown(0) TCGA-60-2722-01 2 26950669 26950669 C T KCNK3 Silent p.L140L 0.84 TCGA-60-2722-01 2 26950670 26950670 T G KCNK3 Missense_Mutation p.L140R 0.86 deleterious(0) probably_damaging(0.999) TCGA-60-2722-01 2 38178824 38178824 C G RMDN2 Missense_Mutation p.L156V 0.88 tolerated_low_confidence(1) benign(0.013) TCGA-60-2722-01 2 43919696 43919696 C G PLEKHH2 Missense_Mutation p.T77S 0.39 tolerated(0.34) benign(0.083) TCGA-60-2722-01 2 44184548 44184548 C A LRPPRC Missense_Mutation p.S542I 0.46 deleterious(0.02) benign(0.211) TCGA-60-2722-01 2 48914948 48914948 C G LHCGR Missense_Mutation p.C663S 0.13 tolerated(0.52) benign(0.002) TCGA-60-2722-01 2 60983482 60983482 A G PAPOLG 5'UTR 0.54 TCGA-60-2722-01 2 61238926 61238926 G C PUS10 Missense_Mutation p.H34D 0.27 tolerated(0.2) benign(0.047) TCGA-60-2722-01 2 71188824 71188824 G T ATP6V1B1 Splice_Site p.X262_splice 0.46 TCGA-60-2722-01 2 74701535 74701535 C A CCDC142 3'UTR 0.44 TCGA-60-2722-01 2 75921419 75921419 T C GCFC2 Missense_Mutation p.Y323C 0.42 deleterious(0) probably_damaging(0.935) TCGA-60-2722-01 2 90458423 90458423 A G CH17-132F21.1 Silent p.A33A 0.31 TCGA-60-2722-01 3 10392220 10392220 C A ATP2B2 Silent p.T726T 0.75 TCGA-60-2722-01 3 118866052 118866052 A T C3orf30 Missense_Mutation p.H339L 0.34 tolerated(0.18) benign(0.07) TCGA-60-2722-01 3 119361403 119361403 T C POPDC2 Missense_Mutation p.R339G 0.43 tolerated_low_confidence(0.43) benign(0) TCGA-60-2722-01 3 121417551 121417551 C A GOLGB1 Nonsense_Mutation p.E607* 0.33 TCGA-60-2722-01 3 121417552 121417552 C G GOLGB1 Missense_Mutation p.M606I 0.34 benign(0.001) TCGA-60-2722-01 3 124397156 124397156 T C KALRN Missense_Mutation p.V709A 0.45 tolerated(0.05) benign(0.022) TCGA-60-2722-01 3 146307484 146307484 C T PLSCR5 Missense_Mutation p.D245N 0.36 deleterious(0.01) possibly_damaging(0.841) TCGA-60-2722-01 3 148885004 148885004 C G HPS3 Missense_Mutation p.H925D 0.16 deleterious(0.01) probably_damaging(0.923) TCGA-60-2722-01 3 157160481 157160481 G C PTX3 Missense_Mutation p.G287R 0.20 deleterious(0.02) probably_damaging(0.919) TCGA-60-2722-01 3 160037573 160037573 G C IFT80 Missense_Mutation p.T311R 0.15 deleterious(0.01) possibly_damaging(0.781) TCGA-60-2722-01 3 160253340 160253340 T C KPNA4 Missense_Mutation p.D83G 0.75 tolerated(0.27) benign(0.003) TCGA-60-2722-01 3 164735787 164735787 C A SI Missense_Mutation p.G1164V 0.19 deleterious(0.02) benign(0.096) TCGA-60-2722-01 3 168833655 168833656 - A MECOM Frame_Shift_Ins p.A546Cfs*2 0.28 TCGA-60-2722-01 3 170624845 170624845 T G EIF5A2 Missense_Mutation p.K68T 0.18 deleterious(0.02) probably_damaging(0.987) TCGA-60-2722-01 3 170843853 170843853 C T TNIK Missense_Mutation p.G621R 0.12 tolerated(0.06) possibly_damaging(0.67) TCGA-60-2722-01 3 184105818 184105818 C T CHRD Missense_Mutation p.P851S 0.15 deleterious(0) probably_damaging(0.998) TCGA-60-2722-01 3 186450437 186450437 G T KNG1 Missense_Mutation p.D302Y 0.15 deleterious(0) probably_damaging(0.917) TCGA-60-2722-01 3 186937970 186937970 C T MASP1 Silent p.V663V 0.24 TCGA-60-2722-01 3 46569047 46569047 G C LRRC2 Silent p.L266L 0.72 TCGA-60-2722-01 3 49691379 49691379 C T BSN Missense_Mutation p.P1464S 0.82 unknown(0) TCGA-60-2722-01 3 74570264 74570264 C T CNTN3 5'UTR 0.76 TCGA-60-2722-01 4 122250738 122250738 C T QRFPR Missense_Mutation p.V343I 0.76 deleterious(0.04) benign(0.007) TCGA-60-2722-01 4 125593263 125593263 T C ANKRD50 Missense_Mutation p.D390G 0.03 tolerated(0.38) benign(0.007) TCGA-60-2722-01 4 126237699 126237699 C T FAT4 Missense_Mutation p.P45S 0.04 benign(0.015) TCGA-60-2722-01 4 128651655 128651655 T C SLC25A31 5'UTR 0.72 TCGA-60-2722-01 4 153247289 153247289 G C FBXW7 Missense_Mutation p.R505G 0.78 deleterious(0) probably_damaging(1) TCGA-60-2722-01 4 164246622 164246622 C G NPY1R Missense_Mutation p.D330H 0.74 deleterious(0) probably_damaging(0.984) TCGA-60-2722-01 4 176556084 176556084 G T GPM6A Missense_Mutation p.S270Y 0.73 deleterious(0) probably_damaging(0.996) TCGA-60-2722-01 4 185940564 185940564 G C HELT Silent p.V61V 0.86 TCGA-60-2722-01 4 46736955 46736955 C A COX7B2 3'UTR 0.43 TCGA-60-2722-01 4 47667114 47667114 G A CORIN Silent p.F508F 0.36 TCGA-60-2722-01 4 69696583 69696583 G T UGT2B10 Nonsense_Mutation p.G525* 0.11 TCGA-60-2722-01 4 69696584 69696584 G T UGT2B10 Missense_Mutation p.G525V 0.11 tolerated(0.09) benign(0.02) TCGA-60-2722-01 4 71628293 71628293 G T RUFY3 Missense_Mutation p.S79I 0.17 tolerated(0.42) probably_damaging(0.997) TCGA-60-2722-01 4 73280574 73280574 C G ADAMTS3 Missense_Mutation p.E207Q 0.17 tolerated(0.65) benign(0.001) TCGA-60-2722-01 4 79301038 79301038 C A FRAS1 Missense_Mutation p.L1151I 0.16 probably_damaging(0.952) TCGA-60-2722-01 4 88578181 88578181 T C DMP1 Intron 0.27 TCGA-60-2722-01 4 91230018 91230018 G T CCSER1 Missense_Mutation p.V195F 0.52 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-60-2722-01 5 101599460 101599460 A G SLCO4C1 Missense_Mutation p.L276S 0.56 deleterious(0) probably_damaging(0.976) TCGA-60-2722-01 5 101834592 101834592 C T SLCO6A1 5'UTR 0.26 TCGA-60-2722-01 5 102440247 102440247 G A GIN1 Nonsense_Mutation p.Q213* 0.18 TCGA-60-2722-01 5 110407609 110407609 A G TSLP Silent p.L7L 0.61 TCGA-60-2722-01 5 110443093 110443093 C G WDR36 Nonsense_Mutation p.Y483* 0.59 TCGA-60-2722-01 5 11199612 11199612 C G CTNND2 Silent p.L641L 0.50 TCGA-60-2722-01 5 131396427 131396427 C T IL3 Missense_Mutation p.L10F 0.79 deleterious_low_confidence(0) unknown(0) TCGA-60-2722-01 5 141016390 141016390 C G HDAC3 5'UTR 0.81 TCGA-60-2722-01 5 161318025 161318025 C A GABRA1 Missense_Mutation p.N275K 0.68 tolerated(0.11) possibly_damaging(0.738) TCGA-60-2722-01 5 172585748 172585748 A C BNIP1 Missense_Mutation p.N134H 0.76 deleterious(0.02) probably_damaging(0.973) TCGA-60-2722-01 5 21461891 21461891 G T GUSBP1 Splice_Site 0.48 TCGA-60-2722-01 5 24535284 24535284 C G CDH10 Missense_Mutation p.G251R 0.33 deleterious(0) probably_damaging(1) TCGA-60-2722-01 5 34004781 34004781 C A AMACR Silent p.L150L 0.25 TCGA-60-2722-01 5 36122994 36122994 T C LMBRD2 Missense_Mutation p.S298G 0.37 tolerated(0.22) benign(0) TCGA-60-2722-01 5 41143068 41143068 G T C6 Nonsense_Mutation p.C888* 0.33 TCGA-60-2722-01 5 6652021 6652021 G A SRD5A1 Silent p.A120A 0.55 TCGA-60-2722-01 5 81549141 81549141 A G ATG10 Missense_Mutation p.N187S 0.46 deleterious(0) possibly_damaging(0.688) TCGA-60-2722-01 5 82937507 82937507 C A HAPLN1 Missense_Mutation p.Q291H 0.27 tolerated(0.22) benign(0.192) TCGA-60-2722-01 5 94224657 94224657 G T MCTP1 Missense_Mutation p.H620Q 0.54 tolerated(0.42) benign(0.01) TCGA-60-2722-01 6 144181587 144181587 G A LTV1 Missense_Mutation p.E274K 0.71 deleterious(0) possibly_damaging(0.897) TCGA-60-2722-01 6 146127417 146127417 T A FBXO30 Missense_Mutation p.H42L 0.78 deleterious(0) probably_damaging(1) TCGA-60-2722-01 6 165832185 165832185 G T PDE10A Missense_Mutation p.D312E 0.71 tolerated(0.25) probably_damaging(0.964) TCGA-60-2722-01 6 17600920 17600920 G C FAM8A1 Missense_Mutation p.E94Q 0.84 tolerated(0.12) probably_damaging(0.983) TCGA-60-2722-01 6 25471400 25471400 A G LRRC16A Missense_Mutation p.T232A 0.88 tolerated(0.5) benign(0.001) TCGA-60-2722-01 6 29455059 29455059 T C MAS1L Silent p.V207V 0.90 TCGA-60-2722-01 6 31544973 31544973 G A TNF Missense_Mutation p.D121N 0.07 tolerated(0.21) benign(0.012) TCGA-60-2722-01 6 47775994 47775994 C A OPN5 Silent p.L287L 0.87 TCGA-60-2722-01 6 70972972 70972972 C G COL9A1 Missense_Mutation p.G457A 0.81 probably_damaging(1) TCGA-60-2722-01 6 82909857 82909857 C A IBTK Splice_Site p.X1009_splice 0.62 TCGA-60-2722-01 7 100815720 100815720 C A NAT16 Silent p.R250R 0.35 TCGA-60-2722-01 7 102815818 102815818 G A DPY19L2P2 RNA 0.50 TCGA-60-2722-01 7 106509091 106509091 G C PIK3CG Missense_Mutation p.R362T 0.36 deleterious(0) probably_damaging(0.995) TCGA-60-2722-01 7 107353040 107353040 G T SLC26A4 Silent p.T764T 0.42 TCGA-60-2722-01 7 120386051 120386051 G C KCND2 Missense_Mutation p.R562T 0.39 deleterious_low_confidence(0.04) benign(0.138) TCGA-60-2722-01 7 12258089 12258089 G A TMEM106B Missense_Mutation p.E75K 0.36 tolerated(0.18) probably_damaging(0.998) TCGA-60-2722-01 7 128486185 128486185 C T FLNC Missense_Mutation p.T1311I 0.49 deleterious(0.01) probably_damaging(1) TCGA-60-2722-01 7 133859319 133859319 G A LRGUK Silent p.L317L 0.40 TCGA-60-2722-01 7 138255744 138255744 C T TRIM24 Missense_Mutation p.P625L 0.40 deleterious(0.01) probably_damaging(0.916) TCGA-60-2722-01 7 141635746 141635746 G A CLEC5A Silent p.C71C 0.47 TCGA-60-2722-01 7 142919923 142919923 A G TAS2R40 Missense_Mutation p.Y251C 0.43 tolerated(0.24) benign(0.033) TCGA-60-2722-01 7 147815229 147815229 C A CNTNAP2 Silent p.A801A 0.43 TCGA-60-2722-01 7 21737761 21737761 T A DNAH11 Missense_Mutation p.V2044E 0.46 benign(0.255) TCGA-60-2722-01 7 33192390 33192390 C G BBS9 Missense_Mutation p.Q64E 0.40 tolerated(0.16) benign(0.096) TCGA-60-2722-01 7 43519310 43519310 C G HECW1 Missense_Mutation p.H1067Q 0.41 deleterious(0.03) possibly_damaging(0.757) TCGA-60-2722-01 7 6487437 6487437 T C DAGLB Missense_Mutation p.I13V 0.56 tolerated(0.22) benign(0.031) TCGA-60-2722-01 7 82579563 82579563 C A PCLO Silent p.T3447T 0.38 TCGA-60-2722-01 7 97860615 97860615 G T TECPR1 Missense_Mutation p.A682D 0.32 deleterious(0) probably_damaging(1) TCGA-60-2722-01 8 10468457 10468457 C T RP1L1 Missense_Mutation p.V1051I 0.69 benign(0.134) TCGA-60-2722-01 8 110439382 110439382 A T PKHD1L1 Silent p.L999L 0.56 TCGA-60-2722-01 8 110535548 110535548 T C PKHD1L1 Silent p.S4139S 0.24 TCGA-60-2722-01 8 123964728 123964728 G A ZHX2 Silent p.V326V 0.21 TCGA-60-2722-01 8 124987425 124987425 G A FER1L6 Missense_Mutation p.D188N 0.25 tolerated(0.05) benign(0.079) TCGA-60-2722-01 8 133790097 133790097 G T PHF20L1 Missense_Mutation p.R8L 0.62 deleterious(0) possibly_damaging(0.641) TCGA-60-2722-01 8 139163804 139163804 C A FAM135B Missense_Mutation p.V972L 0.20 tolerated_low_confidence(0.79) benign(0) TCGA-60-2722-01 8 139164776 139164776 G T FAM135B Missense_Mutation p.L648M 0.61 tolerated(0.09) possibly_damaging(0.717) TCGA-60-2722-01 8 139323149 139323149 C A FAM135B Missense_Mutation p.R31L 0.56 deleterious(0) possibly_damaging(0.465) TCGA-60-2722-01 8 139737671 139737671 G T COL22A1 Missense_Mutation p.P718T 0.66 unknown(0) TCGA-60-2722-01 8 142500317 142500317 G A MROH5 3'Flank 0.66 TCGA-60-2722-01 8 146108175 146108175 C T ZNF250 Silent p.K136K 0.17 TCGA-60-2722-01 8 16032698 16032698 G T MSR1 Missense_Mutation p.A72E 0.64 deleterious(0) possibly_damaging(0.792) TCGA-60-2722-01 8 19822904 19822904 C A LPL 3'UTR 0.62 TCGA-60-2722-01 8 20110905 20110905 C G LZTS1 Missense_Mutation p.M179I 0.20 deleterious(0.01) possibly_damaging(0.548) TCGA-60-2722-01 8 25315739 25315739 C T KCTD9 Silent p.L8L 0.17 TCGA-60-2722-01 8 30539537 30539537 C G GSR Missense_Mutation p.E399Q 0.62 tolerated(0.19) benign(0.404) TCGA-60-2722-01 8 39018484 39018484 G A ADAM32 Silent p.L198L 0.18 TCGA-60-2722-01 8 57079300 57079300 C T PLAG1 Silent p.P335P 0.58 TCGA-60-2722-01 8 67579132 67579132 G A VCPIP1 Missense_Mutation p.P21L 0.30 deleterious_low_confidence(0.02) possibly_damaging(0.713) TCGA-60-2722-01 8 6793613 6793613 T G DEFA4 Missense_Mutation p.T75P 0.66 tolerated(0.4) possibly_damaging(0.796) TCGA-60-2722-01 8 7308655 7308655 C A SPAG11B Intron 0.25 TCGA-60-2722-01 8 75227315 75227315 T C JPH1 Missense_Mutation p.E307G 0.62 deleterious(0.02) probably_damaging(0.999) TCGA-60-2722-01 8 77617186 77617186 G T ZFHX4 Missense_Mutation p.G288V 0.51 probably_damaging(0.979) TCGA-60-2722-01 8 87755792 87755792 G T CNGB3 Missense_Mutation p.Q22K 0.62 tolerated(0.47) benign(0.042) TCGA-60-2722-01 8 89053639 89053639 C G MMP16 3'UTR 0.58 TCGA-60-2722-01 8 92082567 92082567 C G OTUD6B Missense_Mutation p.S15R 0.19 tolerated_low_confidence(0.67) benign(0) TCGA-60-2722-01 9 103340680 103340680 C G MURC Missense_Mutation p.I85M 0.86 deleterious(0) benign(0.012) TCGA-60-2722-01 9 139912256 139912256 C G ABCA2 Missense_Mutation p.E732Q 0.90 deleterious(0) possibly_damaging(0.894) TCGA-60-2722-01 9 139912311 139912311 C T ABCA2 Silent p.V713V 0.94 TCGA-60-2722-01 9 37126821 37126821 G C ZCCHC7 Missense_Mutation p.E164D 0.75 tolerated(0.24) benign(0.022) TCGA-60-2722-01 9 77684836 77684836 C T NMRK1 Missense_Mutation p.E98K 0.39 deleterious(0) probably_damaging(1) TCGA-60-2722-01 9 84603768 84603768 C A SPATA31D1 Missense_Mutation p.T12N 0.39 deleterious_low_confidence(0.04) benign(0.346) TCGA-60-2722-01 9 84606980 84606980 T A SPATA31D1 Missense_Mutation p.F532Y 0.85 deleterious(0.02) probably_damaging(0.999) TCGA-60-2722-01 X 142717087 142717087 C A SLITRK4 Missense_Mutation p.G613V 0.88 tolerated(0.47) probably_damaging(0.999) TCGA-60-2722-01 X 144904509 144904509 G - SLITRK2 Frame_Shift_Del p.N191Ifs*3 0.26 TCGA-60-2722-01 X 15268561 15268561 G C ASB9 Missense_Mutation p.L187V 0.80 deleterious(0) probably_damaging(1) TCGA-60-2722-01 X 32361367 32361367 T G DMD Missense_Mutation p.I1875L 0.88 benign(0.068) TCGA-60-2722-01 X 68382648 68382648 T A PJA1 Missense_Mutation p.K145M 0.78 tolerated(0.09) probably_damaging(0.914) TCGA-60-2722-01 X 70597469 70597469 G A TAF1 Missense_Mutation p.R264H 0.27 deleterious(0.02) benign(0.039) TCGA-60-2722-01 X 73740856 73740856 C A SLC16A2 Silent p.I154I 0.89 TCGA-60-2722-01 X 88009119 88009119 C A CPXCR1 Missense_Mutation p.S235Y 0.81 deleterious(0) benign(0.144) TCGA-60-2722-01 X 91090590 91090590 C A PCDH11X Silent p.T29T 0.88 TCGA-60-2723-01 10 103908180 103908180 G T PPRC1 Silent p.S1484S 0.46 TCGA-60-2723-01 10 108437122 108437122 C G SORCS1 Missense_Mutation p.G594A 0.36 deleterious(0) probably_damaging(0.998) TCGA-60-2723-01 10 115350407 115350407 G A NRAP Missense_Mutation p.P1629L 0.38 deleterious(0.01) benign(0.24) TCGA-60-2723-01 10 15138861 15138861 G C C10orf111 5'UTR 0.34 TCGA-60-2723-01 10 50374902 50374902 C T C10orf128 Intron 0.39 TCGA-60-2723-01 10 55913039 55913039 G A PCDH15 Silent p.D535D 0.38 TCGA-60-2723-01 10 69934038 69934038 C A MYPN Missense_Mutation p.T730K 0.30 deleterious(0.04) benign(0.024) TCGA-60-2723-01 10 72195131 72195131 G C NODAL Missense_Mutation p.P268A 0.16 deleterious(0) probably_damaging(0.999) TCGA-60-2723-01 10 94266216 94266216 T AC IDE Frame_Shift_Ins p.I437Vfs*24 0.22 TCGA-60-2723-01 11 119290968 119290968 G A THY1 Missense_Mutation p.R56C 0.13 deleterious(0) probably_damaging(1) TCGA-60-2723-01 11 119290969 119290969 G T THY1 Silent p.T55T 0.13 TCGA-60-2723-01 11 120201237 120201237 C T TMEM136 3'UTR 0.24 TCGA-60-2723-01 11 120989112 120989112 G T TECTA Missense_Mutation p.E296D 0.17 tolerated(0.24) benign(0.002) TCGA-60-2723-01 11 123065678 123065678 C T CLMP 5'UTR 0.38 TCGA-60-2723-01 11 123597180 123597180 C T ZNF202 Missense_Mutation p.R491H 0.17 deleterious(0.05) probably_damaging(0.997) TCGA-60-2723-01 11 123893774 123893774 C A OR10G9 Missense_Mutation p.P19T 0.09 tolerated(0.09) benign(0.016) TCGA-60-2723-01 11 124620721 124620721 G T VSIG2 Missense_Mutation p.L106M 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-60-2723-01 11 125301131 125301131 T C PKNOX2 Missense_Mutation p.M421T 0.36 deleterious_low_confidence(0) benign(0.204) TCGA-60-2723-01 11 17547921 17547921 A T USH1C Missense_Mutation p.L216Q 0.08 deleterious(0.01) probably_damaging(1) TCGA-60-2723-01 11 17741325 17741325 A G MYOD1 5'UTR 0.10 TCGA-60-2723-01 11 18231608 18231608 G T RP11-113D6.10 Missense_Mutation p.A132S 0.30 deleterious(0.05) possibly_damaging(0.498) TCGA-60-2723-01 11 18252994 18252994 G A SAA4 3'UTR 0.16 TCGA-60-2723-01 11 18498018 18498018 G C LDHAL6A Missense_Mutation p.W227S 0.36 deleterious(0.01) probably_damaging(0.994) TCGA-60-2723-01 11 22284527 22284527 C A ANO5 Silent p.T612T 0.13 TCGA-60-2723-01 11 5322388 5322388 T A OR51B4 Missense_Mutation p.K263N 0.26 tolerated(0.12) benign(0.208) TCGA-60-2723-01 11 55418580 55418580 G T OR4S2 Silent p.V67V 0.16 TCGA-60-2723-01 11 55418609 55418609 C A OR4S2 Missense_Mutation p.P77H 0.31 deleterious(0) probably_damaging(0.969) TCGA-60-2723-01 11 55419050 55419050 G A OR4S2 Missense_Mutation p.R224K 0.29 tolerated(0.15) possibly_damaging(0.454) TCGA-60-2723-01 11 55432892 55432892 C T OR4C6 Missense_Mutation p.L84F 0.33 tolerated_low_confidence(0.07) benign(0.055) TCGA-60-2723-01 11 55594993 55594993 A G OR5L2 Missense_Mutation p.Q100R 0.47 deleterious(0) probably_damaging(0.993) TCGA-60-2723-01 11 55904440 55904440 T A OR8J3 Missense_Mutation p.Y252F 0.46 deleterious(0.02) probably_damaging(0.999) TCGA-60-2723-01 11 56185406 56185406 C A OR5R1 Silent p.L101L 0.52 TCGA-60-2723-01 11 57369607 57369607 G T SERPING1 Missense_Mutation p.G217V 0.14 deleterious(0.01) probably_damaging(1) TCGA-60-2723-01 11 57886593 57886593 T A OR9I1 Silent p.A108A 0.54 TCGA-60-2723-01 11 57886914 57886914 C A OR9I1 Translation_Start_Site p.M1? 0.08 deleterious(0.02) probably_damaging(0.993) TCGA-60-2723-01 11 57970847 57970847 T C OR1S2 Silent p.V269V 0.07 TCGA-60-2723-01 11 58034376 58034376 C A OR10W1 3'UTR 0.21 TCGA-60-2723-01 11 58207151 58207151 A T OR5B12 Silent p.T158T 0.18 TCGA-60-2723-01 11 58921076 58921076 T A FAM111A 3'UTR 0.33 TCGA-60-2723-01 11 59245658 59245658 G A OR4D10 Silent p.V252V 0.19 TCGA-60-2723-01 11 62287588 62287588 A T AHNAK Silent p.P4767P 0.21 TCGA-60-2723-01 11 64358835 64358835 C - SLC22A12 5'UTR 0.36 TCGA-60-2723-01 11 64358837 64358837 C T SLC22A12 5'UTR 0.36 TCGA-60-2723-01 11 71712921 71712921 G A IL18BP 3'UTR 0.22 TCGA-60-2723-01 11 83544666 83544666 C A DLG2 Missense_Mutation p.Q571H 0.16 deleterious(0) possibly_damaging(0.847) TCGA-60-2723-01 11 88337959 88337959 G - GRM5 Frame_Shift_Del p.L441* 0.17 TCGA-60-2723-01 11 89907028 89907028 C A NAALAD2 Missense_Mutation p.L483M 0.19 tolerated(0.09) probably_damaging(1) TCGA-60-2723-01 11 94039700 94039700 G T FOLR4 Missense_Mutation p.A54S 0.21 tolerated(0.2) probably_damaging(0.955) TCGA-60-2723-01 12 101779985 101779985 G T UTP20 3'UTR 0.46 TCGA-60-2723-01 12 104089529 104089529 G T STAB2 Silent p.A1163A 0.39 TCGA-60-2723-01 12 109523484 109523484 C T USP30 Silent p.Y434Y 0.39 TCGA-60-2723-01 12 110969437 110969437 T G RAD9B 3'UTR 0.50 TCGA-60-2723-01 12 124343715 124343715 A T DNAH10 Missense_Mutation p.M2099L 0.53 benign(0.001) TCGA-60-2723-01 12 1988147 1988147 A T CACNA2D4 Missense_Mutation p.L540Q 0.26 deleterious(0) probably_damaging(0.992) TCGA-60-2723-01 12 311986 311986 A T SLC6A12 Missense_Mutation p.L137H 0.25 deleterious(0) probably_damaging(1) TCGA-60-2723-01 12 40012715 40012715 C A ABCD2 Missense_Mutation p.V235L 0.19 tolerated(0.22) possibly_damaging(0.817) TCGA-60-2723-01 12 43833798 43833798 C T ADAMTS20 Missense_Mutation p.V789M 0.44 deleterious(0.03) benign(0.187) TCGA-60-2723-01 12 48238611 48238623 TACTGCTTGGAGT GAATGCATGGAGG VDR Missense_Mutation p.HSKQY447PSMHS 0.08 TCGA-60-2723-01 12 49217127 49217127 G T CACNB3 Missense_Mutation p.G16C 0.30 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-60-2723-01 12 51470288 51470288 G A CSRNP2 Silent p.G19G 0.36 TCGA-60-2723-01 12 58126629 58126629 C G AGAP2 Missense_Mutation p.E561D 0.37 tolerated(0.9) benign(0.013) TCGA-60-2723-01 12 7805076 7805076 G A APOBEC1 Missense_Mutation p.L134F 0.24 deleterious(0) probably_damaging(1) TCGA-60-2723-01 12 78571420 78571420 C G NAV3 Intron 0.34 TCGA-60-2723-01 12 8050947 8050947 G C NANOGP1 Intron 0.18 TCGA-60-2723-01 12 80761356 80761356 G C OTOGL Missense_Mutation p.C2107S 0.16 deleterious(0) probably_damaging(0.999) TCGA-60-2723-01 13 28841467 28841467 G C PAN3 Missense_Mutation p.G574A 0.33 tolerated(0.36) possibly_damaging(0.801) TCGA-60-2723-01 14 100166358 100166358 C T CYP46A1 Silent p.F121F 0.17 TCGA-60-2723-01 14 102028122 102028122 G A DIO3 Missense_Mutation p.D97N 0.13 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-60-2723-01 14 105849743 105849743 C T PACS2 Missense_Mutation p.A558V 0.19 tolerated(0.35) probably_damaging(0.999) TCGA-60-2723-01 14 106610587 106610587 C - IGHV3-15 Frame_Shift_Del p.G28Efs*4 0.22 TCGA-60-2723-01 14 20837529 20837529 G A TEP1 Missense_Mutation p.H2544Y 0.48 deleterious(0.04) benign(0.002) TCGA-60-2723-01 14 21458106 21458106 T C METTL17 5'Flank 0.48 TCGA-60-2723-01 14 22192164 22192164 C T TRAV3 Missense_Mutation p.A10V 0.44 tolerated(0.51) benign(0.001) TCGA-60-2723-01 14 22392244 22392244 G T TRAV14DV4 5'UTR 0.17 TCGA-60-2723-01 14 23746090 23746090 G T HOMEZ Missense_Mutation p.S116Y 0.08 deleterious(0.02) probably_damaging(0.995) TCGA-60-2723-01 14 23746113 23746113 G A HOMEZ Silent p.L108L 0.12 TCGA-60-2723-01 14 23746358 23746358 G A HOMEZ Missense_Mutation p.P27S 0.18 tolerated(0.06) probably_damaging(0.999) TCGA-60-2723-01 14 42360618 42360618 C A LRFN5 Nonsense_Mutation p.C517* 0.19 TCGA-60-2723-01 14 42360619 42360619 C T LRFN5 Missense_Mutation p.H518Y 0.19 deleterious(0.02) benign(0.418) TCGA-60-2723-01 14 50266381 50266381 C A NEMF Missense_Mutation p.L796F 0.17 tolerated(0.1) benign(0.001) TCGA-60-2723-01 14 70530612 70530612 C A SLC8A3 Intron 0.15 TCGA-60-2723-01 14 70633537 70633537 C - SLC8A3 Frame_Shift_Del p.E535Nfs*35 0.21 TCGA-60-2723-01 14 73238591 73238591 G A DPF3 Nonsense_Mutation p.Q15* 0.21 TCGA-60-2723-01 14 91252558 91252558 C T TTC7B Missense_Mutation p.R79H 0.20 deleterious(0) possibly_damaging(0.575) TCGA-60-2723-01 15 22709057 22709057 G T AC116165.1 5'Flank 0.31 TCGA-60-2723-01 15 38591692 38591692 G T SPRED1 Nonsense_Mutation p.E51* 0.32 TCGA-60-2723-01 15 43822558 43822558 T A MAP1A 3'UTR 0.23 TCGA-60-2723-01 15 44211710 44211710 G A FRMD5 Silent p.F92F 0.37 TCGA-60-2723-01 15 49620760 49620760 T C FAM227B 3'UTR 0.45 TCGA-60-2723-01 15 65628268 65628268 G - IGDCC3 Frame_Shift_Del p.Q146Rfs*24 0.38 TCGA-60-2723-01 15 73852314 73852314 T A C15orf60 3'UTR 0.46 TCGA-60-2723-01 15 77236139 77236139 A G RCN2 Missense_Mutation p.Q163R 0.22 tolerated(0.77) benign(0.002) TCGA-60-2723-01 15 78805425 78805425 G T HYKK Splice_Site 0.05 TCGA-60-2723-01 16 11009494 11009502 CTGCAGCAT - CIITA In_Frame_Del p.Q987_L989del 0.35 TCGA-60-2723-01 16 20693666 20693666 T C ACSM1 Missense_Mutation p.I175V 0.37 tolerated(1) benign(0.001) TCGA-60-2723-01 16 21078624 21078624 C A DNAH3 Missense_Mutation p.K1166N 0.23 deleterious(0) possibly_damaging(0.905) TCGA-60-2723-01 16 2134978 2134979 CC - TSC2 Frame_Shift_Del p.P1508Lfs*15 0.31 TCGA-60-2723-01 16 3119468 3119468 T C IL32 3'UTR 0.28 TCGA-60-2723-01 16 76587245 76587245 G A CNTNAP4 Missense_Mutation p.A1097T 0.29 tolerated(0.13) possibly_damaging(0.555) TCGA-60-2723-01 17 10212613 10212613 G T MYH13 Missense_Mutation p.R1703S 0.46 deleterious(0) probably_damaging(0.997) TCGA-60-2723-01 17 10222343 10222343 T C MYH13 Missense_Mutation p.N1168D 0.37 deleterious(0.01) probably_damaging(0.995) TCGA-60-2723-01 17 10351439 10351439 G A MYH4 Missense_Mutation p.S1554F 0.36 deleterious(0.02) probably_damaging(0.925) TCGA-60-2723-01 17 10401147 10401147 C G MYH1 Missense_Mutation p.Q1423H 0.16 tolerated(0.73) probably_damaging(1) TCGA-60-2723-01 17 11833311 11833311 C G DNAH9 Missense_Mutation p.I4002M 0.41 benign(0.297) TCGA-60-2723-01 17 19687201 19687201 C A ULK2 Missense_Mutation p.G757W 0.42 tolerated(0.18) probably_damaging(0.98) TCGA-60-2723-01 17 20217391 20217391 T G SPECC1 3'UTR 0.24 TCGA-60-2723-01 17 293122 293122 G C FAM101B Missense_Mutation p.P90A 0.30 tolerated(0.57) benign(0.185) TCGA-60-2723-01 17 293123 293123 C A FAM101B Missense_Mutation p.R89S 0.28 deleterious(0) benign(0.075) TCGA-60-2723-01 17 37564132 37564132 G C MED1 Missense_Mutation p.P1448A 0.34 deleterious_low_confidence(0) unknown(0) TCGA-60-2723-01 17 37866733 37866733 C T ERBB2 Silent p.P300P 0.45 TCGA-60-2723-01 17 44626194 44626194 C A LRRC37A2 Missense_Mutation p.A1230D 0.17 deleterious(0) benign(0.421) TCGA-60-2723-01 17 48191655 48191655 C T SAMD14 Missense_Mutation p.D308N 0.34 deleterious(0.04) possibly_damaging(0.828) TCGA-60-2723-01 17 72691910 72691910 A T CD300LF Missense_Mutation p.L224H 0.54 tolerated(0.16) possibly_damaging(0.525) TCGA-60-2723-01 17 74023265 74023265 C A EVPL Silent p.L5L 0.51 TCGA-60-2723-01 17 7578176 7578176 C A TP53 Splice_Site p.X224_splice 0.27 TCGA-60-2723-01 17 7836605 7836605 G C CNTROB Missense_Mutation p.G70R 0.12 deleterious(0.01) possibly_damaging(0.58) TCGA-60-2723-01 18 25589781 25589781 C G CDH2 Missense_Mutation p.G201A 0.26 deleterious(0.02) probably_damaging(1) TCGA-60-2723-01 18 30092878 30092878 G T WBP11P1 RNA 0.26 TCGA-60-2723-01 18 49867170 49867170 C G DCC Missense_Mutation p.L5V 0.29 tolerated_low_confidence(0.34) benign(0.046) TCGA-60-2723-01 18 67614673 67614673 T C CD226 Intron 0.18 TCGA-60-2723-01 18 77105425 77105425 C G ATP9B Intron 0.29 TCGA-60-2723-01 19 10602887 10602887 G C KEAP1 Missense_Mutation p.L231V 0.38 tolerated(0.06) benign(0.219) TCGA-60-2723-01 19 18279624 18279624 G A PIK3R2 Missense_Mutation p.E633K 0.30 deleterious(0) probably_damaging(0.932) TCGA-60-2723-01 19 22363828 22363828 C A ZNF676 Missense_Mutation p.G231C 0.06 deleterious(0) probably_damaging(1) TCGA-60-2723-01 19 22942386 22942386 T A ZNF99 Nonsense_Mutation p.K109* 0.32 TCGA-60-2723-01 19 2989088 2989088 C T TLE6 Missense_Mutation p.A257V 0.48 deleterious(0.04) benign(0.037) TCGA-60-2723-01 19 30935603 30935603 C T ZNF536 Silent p.C378C 0.30 TCGA-60-2723-01 19 33642152 33642152 T G WDR88 Missense_Mutation p.S249A 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-60-2723-01 19 36351813 36351813 G T KIRREL2 Missense_Mutation p.G311W 0.19 deleterious(0.02) possibly_damaging(0.778) TCGA-60-2723-01 19 37880809 37880809 G A ZNF527 3'UTR 0.17 TCGA-60-2723-01 19 40581177 40581177 C T ZNF780A Missense_Mutation p.C392Y 0.35 deleterious(0) probably_damaging(1) TCGA-60-2723-01 19 44050226 44050226 C - XRCC1 Frame_Shift_Del p.D487Tfs*6 0.15 TCGA-60-2723-01 19 440878 440878 G A SHC2 Missense_Mutation p.R175C 0.43 deleterious(0) probably_damaging(1) TCGA-60-2723-01 19 46127984 46127984 C T EML2 Nonsense_Mutation p.W479* 0.12 TCGA-60-2723-01 19 54386432 54386432 G T PRKCG Missense_Mutation p.Q62H 0.43 deleterious(0.01) probably_damaging(0.926) TCGA-60-2723-01 19 54401724 54401724 G A PRKCG Missense_Mutation p.E375K 0.36 tolerated(0.09) benign(0.05) TCGA-60-2723-01 19 55341403 55341403 G T KIR3DL1 Nonsense_Mutation p.E376* 0.40 TCGA-60-2723-01 19 7812352 7812352 C A CD209 Nonsense_Mutation p.E16* 0.33 TCGA-60-2723-01 19 9721953 9721953 C A ZNF561 Missense_Mutation p.R128S 0.31 tolerated(1) benign(0.003) TCGA-60-2723-01 19 9721954 9721954 C A ZNF561 Missense_Mutation p.R128M 0.31 deleterious(0.01) possibly_damaging(0.724) TCGA-60-2723-01 1 101203708 101203708 C G VCAM1 Missense_Mutation p.P697A 0.28 deleterious(0.02) possibly_damaging(0.899) TCGA-60-2723-01 1 103488298 103488298 G T COL11A1 Missense_Mutation p.S415R 0.10 probably_damaging(0.985) TCGA-60-2723-01 1 111969180 111969180 C A OVGP1 Missense_Mutation p.D47Y 0.14 deleterious(0) probably_damaging(0.997) TCGA-60-2723-01 1 111969196 111969196 G C OVGP1 Missense_Mutation p.I41M 0.16 deleterious(0.03) possibly_damaging(0.878) TCGA-60-2723-01 1 113657152 113657152 C T LRIG2 Silent p.N728N 0.36 TCGA-60-2723-01 1 114640424 114640424 G T SYT6 Missense_Mutation p.N395K 0.13 tolerated(0.19) probably_damaging(0.96) TCGA-60-2723-01 1 145075747 145075747 G T PDE4DIP Missense_Mutation p.T39N 0.05 deleterious_low_confidence(0.02) possibly_damaging(0.888) TCGA-60-2723-01 1 151109545 151109545 C A SEMA6C Missense_Mutation p.Q254H 0.26 deleterious(0) benign(0.387) TCGA-60-2723-01 1 151227255 151227255 C G PSMD4 5'UTR 0.39 TCGA-60-2723-01 1 156642911 156642911 G C NES Missense_Mutation p.P357A 0.23 tolerated(0.06) benign(0.114) TCGA-60-2723-01 1 157559034 157559034 G A FCRL4 Silent p.G89G 0.04 TCGA-60-2723-01 1 157665949 157665949 G T FCRL3 Missense_Mutation p.S338Y 0.29 deleterious(0.04) probably_damaging(0.982) TCGA-60-2723-01 1 157739847 157739847 T C FCRL2 Missense_Mutation p.Q135R 0.27 tolerated(0.09) benign(0.144) TCGA-60-2723-01 1 159832339 159832339 T A VSIG8 5'UTR 0.13 TCGA-60-2723-01 1 160147346 160147346 T C ATP1A4 Silent p.F876F 0.24 TCGA-60-2723-01 1 165533105 165533105 C T LRRC52 3'UTR 0.17 TCGA-60-2723-01 1 171510562 171510562 G C PRRC2C Silent p.L1317L 0.31 TCGA-60-2723-01 1 175049351 175049351 G T TNN Silent p.L279L 0.31 TCGA-60-2723-01 1 178885490 178885490 A G RALGPS2 Missense_Mutation p.E583G 0.18 deleterious(0) probably_damaging(0.986) TCGA-60-2723-01 1 180775220 180775220 G T XPR1 Missense_Mutation p.R157L 0.28 deleterious(0) probably_damaging(0.993) TCGA-60-2723-01 1 181549812 181549812 G T CACNA1E Missense_Mutation p.G284V 0.28 deleterious(0) probably_damaging(0.988) TCGA-60-2723-01 1 201036078 201036078 C T CACNA1S Missense_Mutation p.R865H 0.24 deleterious(0.02) probably_damaging(0.957) TCGA-60-2723-01 1 216073560 216073560 C T USH2A Splice_Site p.X2484_splice 0.30 TCGA-60-2723-01 1 216143994 216143994 C T USH2A Silent p.T2310T 0.25 TCGA-60-2723-01 1 228471378 228471378 G C OBSCN Missense_Mutation p.R3400P 0.37 possibly_damaging(0.87) TCGA-60-2723-01 1 228480222 228480222 A T OBSCN Splice_Site p.X3964_splice 0.27 TCGA-60-2723-01 1 238090690 238090690 G T RP11-193H5.1 RNA 0.19 TCGA-60-2723-01 1 241099992 241099992 A G RGS7 Silent p.L81L 0.29 TCGA-60-2723-01 1 248112521 248112521 G T OR2L8 Missense_Mutation p.R121L 0.26 deleterious(0.02) benign(0.234) TCGA-60-2723-01 1 248129478 248129478 C G OR2AK2 Missense_Mutation p.S282C 0.30 deleterious(0.01) probably_damaging(0.967) TCGA-60-2723-01 1 248343459 248343459 C A OR2M2 Missense_Mutation p.P58T 0.29 deleterious(0) possibly_damaging(0.45) TCGA-60-2723-01 1 32682460 32682460 G C TMEM234 Silent p.T139T 0.32 TCGA-60-2723-01 1 34006908 34006908 G T CSMD2 Silent p.V2949V 0.31 TCGA-60-2723-01 1 3680356 3680356 G A CCDC27 Missense_Mutation p.E470K 0.34 deleterious(0) probably_damaging(0.96) TCGA-60-2723-01 1 5923438 5923438 C A NPHP4 Missense_Mutation p.G1390C 0.27 deleterious(0) probably_damaging(0.998) TCGA-60-2723-01 1 74957880 74957880 G T TNNI3K Missense_Mutation p.A862S 0.15 tolerated_low_confidence(0.22) possibly_damaging(0.598) TCGA-60-2723-01 1 75037835 75037835 C A C1orf173 Missense_Mutation p.D1187Y 0.29 deleterious(0) probably_damaging(0.935) TCGA-60-2723-01 1 91859730 91859730 A T HFM1 Silent p.P138P 0.29 TCGA-60-2723-01 1 99772498 99772498 A T LPPR4 Missense_Mutation p.N742Y 0.10 tolerated(0.05) benign(0.309) TCGA-60-2723-01 20 10621761 10621761 A T JAG1 Silent p.I1016I 0.29 TCGA-60-2723-01 20 13868482 13868482 C A SEL1L2 Missense_Mutation p.L226F 0.15 tolerated(0.2) benign(0.094) TCGA-60-2723-01 20 20493357 20493357 C G RALGAPA2 Missense_Mutation p.M1552I 0.23 tolerated(0.4) benign(0.082) TCGA-60-2723-01 20 30037996 30037996 C G DEFB123 3'UTR 0.14 TCGA-60-2723-01 20 30408096 30408096 C G MYLK2 Missense_Mutation p.Q74E 0.21 tolerated_low_confidence(0.12) benign(0.004) TCGA-60-2723-01 20 30616834 30616834 C G CCM2L Missense_Mutation p.A369G 0.23 tolerated_low_confidence(0.1) benign(0.024) TCGA-60-2723-01 20 30689186 30689186 G T HCK Missense_Mutation p.C482F 0.14 deleterious(0) probably_damaging(1) TCGA-60-2723-01 20 39704813 39704813 A G TOP1 Missense_Mutation p.E53G 0.23 deleterious_low_confidence(0.02) unknown(0) TCGA-60-2723-01 20 42979571 42979571 C A R3HDML 3'UTR 0.14 TCGA-60-2723-01 20 43384731 43384731 G A RIMS4 3'UTR 0.23 TCGA-60-2723-01 20 44259706 44259706 C T WFDC10A 3'UTR 0.19 TCGA-60-2723-01 20 44351115 44351115 C A SPINT4 Missense_Mutation p.L37I 0.23 deleterious(0.05) benign(0.08) TCGA-60-2723-01 20 47265955 47265955 C A PREX1 Missense_Mutation p.G1063V 0.17 deleterious(0) probably_damaging(0.984) TCGA-60-2723-01 20 58494628 58494628 T C SYCP2 Missense_Mutation p.K108E 0.22 deleterious(0.02) possibly_damaging(0.904) TCGA-60-2723-01 22 18021972 18021972 A G CECR2 Missense_Mutation p.I693V 0.17 tolerated_low_confidence(0.09) benign(0.019) TCGA-60-2723-01 22 18077343 18077343 T G ATP6V1E1 Silent p.I190I 0.48 TCGA-60-2723-01 22 19203623 19203623 G A CLTCL1 Silent p.H1021H 0.19 TCGA-60-2723-01 22 22890587 22890587 T A PRAME Missense_Mutation p.S478C 0.21 deleterious(0) possibly_damaging(0.789) TCGA-60-2723-01 22 35799497 35799497 A C MCM5 Missense_Mutation p.K129Q 0.33 tolerated(0.18) benign(0.035) TCGA-60-2723-01 22 37539628 37539628 A C IL2RB Missense_Mutation p.C46G 0.20 deleterious(0) probably_damaging(1) TCGA-60-2723-01 22 38531000 38531000 C A PLA2G6 Missense_Mutation p.A297S 0.41 tolerated(0.19) possibly_damaging(0.842) TCGA-60-2723-01 22 39427729 39427729 A G APOBEC3D Missense_Mutation p.R265G 0.38 deleterious(0) benign(0.084) TCGA-60-2723-01 22 45736457 45736457 C T FAM118A 3'UTR 0.37 TCGA-60-2723-01 2 103068286 103068286 G A IL18RAP Missense_Mutation p.S482N 0.23 deleterious(0) probably_damaging(0.987) TCGA-60-2723-01 2 108921151 108921151 G A SULT1C2 Missense_Mutation p.G177E 0.28 deleterious(0) probably_damaging(1) TCGA-60-2723-01 2 112550114 112550114 C A ANAPC1 Nonsense_Mutation p.E1513* 0.31 TCGA-60-2723-01 2 1161234 1161234 G T SNTG2 Missense_Mutation p.V138L 0.26 deleterious(0.03) probably_damaging(0.983) TCGA-60-2723-01 2 119727695 119727695 A C MARCO Missense_Mutation p.N69H 0.28 deleterious(0.03) probably_damaging(0.979) TCGA-60-2723-01 2 128030447 128030447 T A ERCC3 Silent p.I607I 0.15 TCGA-60-2723-01 2 131796570 131796570 G T ARHGEF4 Missense_Mutation p.D238Y 0.27 deleterious(0) probably_damaging(0.998) TCGA-60-2723-01 2 135744462 135744462 A T MAP3K19 Silent p.P660P 0.26 TCGA-60-2723-01 2 141598639 141598639 T C LRP1B Silent p.L1654L 0.17 TCGA-60-2723-01 2 158114977 158114977 A T GALNT5 Missense_Mutation p.H128L 0.14 tolerated_low_confidence(0.23) benign(0.004) TCGA-60-2723-01 2 166246194 166246194 C G SCN2A Missense_Mutation p.P1960A 0.27 tolerated(0.08) benign(0.02) TCGA-60-2723-01 2 166848433 166848433 G T SCN1A Silent p.V1784V 0.30 TCGA-60-2723-01 2 168101741 168101741 A T XIRP2 Missense_Mutation p.E1280V 0.13 probably_damaging(1) TCGA-60-2723-01 2 176987592 176987592 G C HOXD9 Missense_Mutation p.E32D 0.15 tolerated(0.64) benign(0.007) TCGA-60-2723-01 2 183723523 183723523 C A FRZB Missense_Mutation p.A173S 0.28 tolerated(0.6) benign(0.001) TCGA-60-2723-01 2 197583269 197583269 A T CCDC150 Missense_Mutation p.T637S 0.24 tolerated(0.17) benign(0.167) TCGA-60-2723-01 2 202712138 202712138 G T CDK15 Missense_Mutation p.G296C 0.09 deleterious(0) probably_damaging(1) TCGA-60-2723-01 2 203762032 203762032 C A WDR12 Missense_Mutation p.V149L 0.27 tolerated(0.16) benign(0.095) TCGA-60-2723-01 2 20494185 20494185 G T PUM2 Missense_Mutation p.N368K 0.14 tolerated_low_confidence(0.06) benign(0.138) TCGA-60-2723-01 2 206617572 206617572 G T NRP2 Missense_Mutation p.Q639H 0.27 tolerated(0.28) benign(0.004) TCGA-60-2723-01 2 220355278 220355278 G C SPEG Missense_Mutation p.M3023I 0.19 probably_damaging(0.985) TCGA-60-2723-01 2 225672459 225672459 C G DOCK10 Missense_Mutation p.G1210R 0.17 deleterious(0) probably_damaging(0.994) TCGA-60-2723-01 2 228996723 228996723 C T SPHKAP Silent p.P37P 0.28 TCGA-60-2723-01 2 233274065 233274065 G T ALPPL2 Missense_Mutation p.D403Y 0.15 deleterious(0) probably_damaging(0.963) TCGA-60-2723-01 2 32667235 32667235 G C BIRC6 Missense_Mutation p.Q1349H 0.49 probably_damaging(0.986) TCGA-60-2723-01 2 79349245 79349246 - A REG1A Frame_Shift_Ins p.N108Efs*26 0.35 TCGA-60-2723-01 2 89292050 89292050 G C IGKV1-8 Missense_Mutation p.Q75E 0.36 tolerated(0.59) benign(0.005) TCGA-60-2723-01 2 91843399 91843399 A T AC027612.6 RNA 0.17 TCGA-60-2723-01 2 99185132 99185132 G T INPP4A Splice_Site p.X845_splice 0.14 TCGA-60-2723-01 3 100364866 100364866 G A GPR128 Missense_Mutation p.D342N 0.21 tolerated(1) benign(0.001) TCGA-60-2723-01 3 108403065 108403065 G T DZIP3 Missense_Mutation p.M962I 0.40 tolerated(0.15) benign(0.002) TCGA-60-2723-01 3 109056416 109056416 A G DPPA4 5'UTR 0.25 TCGA-60-2723-01 3 111297997 111297997 T C CD96 Missense_Mutation p.F239L 0.20 tolerated(0.68) benign(0.053) TCGA-60-2723-01 3 111795864 111795864 G T TMPRSS7 Missense_Mutation p.Q573H 0.23 deleterious(0) probably_damaging(0.981) TCGA-60-2723-01 3 113955205 113955205 G A ZNF80 Silent p.H239H 0.47 TCGA-60-2723-01 3 114070784 114070784 T C ZBTB20 Intron 0.27 TCGA-60-2723-01 3 124692706 124692706 C A HEG1 Missense_Mutation p.D1289Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-60-2723-01 3 126272250 126272250 C G C3orf22 5'UTR 0.37 TCGA-60-2723-01 3 126732960 126732960 G T PLXNA1 Splice_Site p.X804_splice 0.10 TCGA-60-2723-01 3 132166270 132166270 A G DNAJC13 Missense_Mutation p.K84E 0.28 deleterious(0.03) possibly_damaging(0.552) TCGA-60-2723-01 3 133098802 133098802 A G TMEM108 Missense_Mutation p.T83A 0.15 tolerated_low_confidence(0.25) benign(0.196) TCGA-60-2723-01 3 137850015 137850015 G - A4GNT Frame_Shift_Del p.C29Afs*18 0.48 TCGA-60-2723-01 3 138739325 138739325 A G PRR23B Missense_Mutation p.I60T 0.13 deleterious(0) benign(0.252) TCGA-60-2723-01 3 14862052 14862052 T G FGD5 Missense_Mutation p.Y492D 0.41 tolerated(0.08) possibly_damaging(0.736) TCGA-60-2723-01 3 15457358 15457358 A G METTL6 Missense_Mutation p.V151A 0.36 deleterious(0) benign(0.057) TCGA-60-2723-01 3 165547603 165547603 C A BCHE Missense_Mutation p.D407Y 0.27 deleterious(0.01) benign(0.125) TCGA-60-2723-01 3 183014824 183014824 C T MCF2L2 Silent p.P479P 0.21 TCGA-60-2723-01 3 195595138 195595138 C A TNK2 Silent p.G740G 0.18 TCGA-60-2723-01 3 40529231 40529231 C T ZNF619 Silent p.S450S 0.30 TCGA-60-2723-01 3 47125224 47125224 A G SETD2 Missense_Mutation p.W2016R 0.39 deleterious(0) probably_damaging(0.999) TCGA-60-2723-01 3 49940543 49940543 T G MST1R Missense_Mutation p.H167P 0.47 tolerated(0.21) benign(0.008) TCGA-60-2723-01 3 50374818 50374818 T A RASSF1 Intron 0.29 TCGA-60-2723-01 3 97806042 97806042 C A OR5AC2 Missense_Mutation p.T9N 0.17 deleterious(0) probably_damaging(0.918) TCGA-60-2723-01 4 103966046 103966046 C A SLC9B2 Splice_Site p.X332_splice 0.38 TCGA-60-2723-01 4 113575316 113575316 G T LARP7 Splice_Site p.X563_splice 0.44 TCGA-60-2723-01 4 123797543 123797543 C A FGF2 Nonsense_Mutation p.Y215* 0.32 TCGA-60-2723-01 4 15529081 15529081 C T CC2D2A Silent p.Y387Y 0.35 TCGA-60-2723-01 4 15987391 15987391 C G PROM1 Missense_Mutation p.E758Q 0.12 tolerated(0.08) benign(0.174) TCGA-60-2723-01 4 174448478 174448478 C A HAND2 Missense_Mutation p.G202C 0.36 deleterious(0) probably_damaging(0.97) TCGA-60-2723-01 4 23797329 23797329 C A PPARGC1A 3'UTR 0.50 TCGA-60-2723-01 4 3427268 3427268 G A RGS12 Silent p.K1104K 0.39 TCGA-60-2723-01 4 42400051 42400051 G C SHISA3 5'UTR 0.50 TCGA-60-2723-01 4 69683839 69683839 C A UGT2B10 Missense_Mutation p.P271T 0.35 deleterious(0.01) possibly_damaging(0.901) TCGA-60-2723-01 4 6969094 6969094 A G TBC1D14 Silent p.L262L 0.32 TCGA-60-2723-01 4 87968580 87968580 C T AFF1 Missense_Mutation p.T298M 0.34 deleterious(0) probably_damaging(1) TCGA-60-2723-01 5 140482425 140482425 C A PCDHB3 Missense_Mutation p.P731H 0.31 tolerated_low_confidence(1) benign(0.003) TCGA-60-2723-01 5 140736757 140736757 G T PCDHGA4 Missense_Mutation p.V664L 0.38 tolerated_low_confidence(0.08) benign(0.33) TCGA-60-2723-01 5 156456631 156456631 G A HAVCR1 3'UTR 0.43 TCGA-60-2723-01 5 176316651 176316651 A G HK3 Missense_Mutation p.V242A 0.44 deleterious(0) possibly_damaging(0.626) TCGA-60-2723-01 5 19838948 19838948 G A CDH18 Missense_Mutation p.R50C 0.07 deleterious(0) probably_damaging(0.985) TCGA-60-2723-01 5 33535093 33535093 G T ADAMTS12 Missense_Mutation p.S1484Y 0.14 deleterious(0) possibly_damaging(0.447) TCGA-60-2723-01 5 34020506 34020506 T C C1QTNF3 3'UTR 0.13 TCGA-60-2723-01 5 34949772 34949772 A G DNAJC21 Missense_Mutation p.E437G 0.21 tolerated(0.14) unknown(0) TCGA-60-2723-01 5 35070228 35070228 C G PRLR Missense_Mutation p.S228T 0.20 tolerated(0.57) benign(0) TCGA-60-2723-01 5 35954287 35954287 C A UGT3A1 3'UTR 0.49 TCGA-60-2723-01 5 39138759 39138759 A T FYB Missense_Mutation p.I475K 0.11 deleterious(0) possibly_damaging(0.703) TCGA-60-2723-01 5 40981579 40981579 G A C7 Silent p.E812E 0.43 TCGA-60-2723-01 5 41033217 41033217 C A MROH2B Missense_Mutation p.G763C 0.20 tolerated(0.24) benign(0.015) TCGA-60-2723-01 5 59943305 59943305 C A DEPDC1B Missense_Mutation p.D124Y 0.33 deleterious(0) benign(0.372) TCGA-60-2723-01 5 59943306 59943306 C A DEPDC1B Missense_Mutation p.K123N 0.32 tolerated(0.22) benign(0) TCGA-60-2723-01 5 644526 644526 A G CEP72 Missense_Mutation p.N551S 0.12 tolerated(0.31) benign(0.043) TCGA-60-2723-01 5 72743694 72743694 T C FOXD1 Missense_Mutation p.K165R 0.50 tolerated_low_confidence(0.07) possibly_damaging(0.493) TCGA-60-2723-01 6 116879179 116879179 G T FAM26D Missense_Mutation p.K107N 0.25 tolerated(0.1) benign(0.384) TCGA-60-2723-01 6 122720903 122720903 G T HSF2 Silent p.V7V 0.21 TCGA-60-2723-01 6 123332277 123332277 G C CLVS2 Missense_Mutation p.M179I 0.29 tolerated(1) benign(0.002) TCGA-60-2723-01 6 152560737 152560737 C G SYNE1 Silent p.L6666L 0.25 TCGA-60-2723-01 6 161087390 161087390 C A LPA 5'UTR 0.12 TCGA-60-2723-01 6 169648983 169648983 G T THBS2 Silent p.R46R 0.40 TCGA-60-2723-01 6 24178600 24178600 G T DCDC2 Missense_Mutation p.D428E 0.17 tolerated_low_confidence(0.97) benign(0.001) TCGA-60-2723-01 6 27860917 27860917 C A HIST1H2AM Missense_Mutation p.R4L 0.15 deleterious_low_confidence(0.01) benign(0.01) TCGA-60-2723-01 6 29054979 29054979 C A OR2B3 Missense_Mutation p.G16V 0.29 deleterious(0.02) possibly_damaging(0.45) TCGA-60-2723-01 6 33393613 33393613 C T SYNGAP1 Silent p.S76S 0.07 TCGA-60-2723-01 6 38796023 38796023 G T DNAH8 Missense_Mutation p.D1166Y 0.43 benign(0.32) TCGA-60-2723-01 6 39272280 39272281 - C KCNK17 Frame_Shift_Ins p.T169Hfs*6 0.32 TCGA-60-2723-01 6 42712981 42712981 G A TBCC Silent p.S277S 0.41 TCGA-60-2723-01 6 52109205 52109205 C T IL17F Missense_Mutation p.G8D 0.39 tolerated(1) benign(0) TCGA-60-2723-01 6 57512471 57512471 G T PRIM2 Splice_Site 0.14 TCGA-60-2723-01 6 70049265 70049265 G T BAI3 Missense_Mutation p.A1110S 0.23 deleterious(0.01) possibly_damaging(0.471) TCGA-60-2723-01 6 75818736 75818736 C A COL12A1 Missense_Mutation p.A2700S 0.40 benign(0.012) TCGA-60-2723-01 6 79707136 79707136 T A PHIP Silent p.V732V 0.24 TCGA-60-2723-01 6 84799251 84799251 G T MRAP2 3'UTR 0.46 TCGA-60-2723-01 7 100246273 100246273 G A ACTL6B Missense_Mutation p.S192F 0.12 deleterious(0) probably_damaging(0.992) TCGA-60-2723-01 7 100675095 100675095 C G MUC17 Missense_Mutation p.T133S 0.29 benign(0.004) TCGA-60-2723-01 7 100682506 100682506 A G MUC17 Missense_Mutation p.I2603M 0.16 probably_damaging(0.93) TCGA-60-2723-01 7 107790506 107790506 A G NRCAM Missense_Mutation p.L1255P 0.28 deleterious(0) probably_damaging(1) TCGA-60-2723-01 7 122033627 122033627 C A CADPS2 Missense_Mutation p.C919F 0.20 tolerated(0.06) possibly_damaging(0.56) TCGA-60-2723-01 7 122341945 122341945 G C RNF148 Missense_Mutation p.P287R 0.36 deleterious(0) probably_damaging(0.999) TCGA-60-2723-01 7 1273220 1273220 C A UNCX Silent p.T113T 0.66 TCGA-60-2723-01 7 138711516 138711516 C A ZC3HAV1L Missense_Mutation p.G275V 0.23 deleterious(0) probably_damaging(0.934) TCGA-60-2723-01 7 138822649 138822649 T C TTC26 Silent p.C66C 0.21 TCGA-60-2723-01 7 142606744 142606744 T A TRPV5 Missense_Mutation p.M603L 0.22 tolerated(0.22) benign(0.033) TCGA-60-2723-01 7 143417215 143417215 G - FAM115C Frame_Shift_Del p.L357Cfs*2 0.15 TCGA-60-2723-01 7 144015716 144015716 T A OR2A1 Missense_Mutation p.F167I 0.10 deleterious(0) probably_damaging(0.987) TCGA-60-2723-01 7 147675073 147675073 A G CNTNAP2 Missense_Mutation p.Q792R 0.35 tolerated(0.56) benign(0.001) TCGA-60-2723-01 7 148485762 148485762 A G CUL1 Silent p.L531L 0.13 TCGA-60-2723-01 7 148876570 148876570 G C ZNF398 Missense_Mutation p.E536Q 0.29 deleterious(0) probably_damaging(0.998) TCGA-60-2723-01 7 150164377 150164377 A T GIMAP8 Silent p.G197G 0.32 TCGA-60-2723-01 7 150389846 150389846 G C GIMAP2 Missense_Mutation p.D158H 0.29 deleterious(0.02) benign(0.04) TCGA-60-2723-01 7 150556022 150556022 G T AOC1 Missense_Mutation p.S581I 0.21 deleterious(0) probably_damaging(0.998) TCGA-60-2723-01 7 154263965 154263965 T C DPP6 Silent p.D197D 0.22 TCGA-60-2723-01 7 158449109 158449109 T A NCAPG2 Missense_Mutation p.K744I 0.17 deleterious(0.02) possibly_damaging(0.73) TCGA-60-2723-01 7 29407588 29407588 C G CHN2 Missense_Mutation p.I43M 0.50 deleterious(0.04) benign(0.006) TCGA-60-2723-01 7 48313492 48313492 C A ABCA13 Missense_Mutation p.S1410Y 0.10 possibly_damaging(0.681) TCGA-60-2723-01 7 63538479 63538479 A T ZNF727 Missense_Mutation p.Y351F 0.24 tolerated(0.68) benign(0.296) TCGA-60-2723-01 7 66406997 66406997 C T TMEM248 Missense_Mutation p.P49S 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-60-2723-01 7 72413685 72413685 C G POM121 Silent p.A786A 0.08 TCGA-60-2723-01 7 78119141 78119141 T C MAGI2 Missense_Mutation p.T328A 0.32 deleterious(0) probably_damaging(0.998) TCGA-60-2723-01 7 81381445 81381445 A G HGF Missense_Mutation p.C206R 0.26 deleterious(0) probably_damaging(1) TCGA-60-2723-01 7 92731286 92731286 T A SAMD9 Missense_Mutation p.Q1375H 0.21 tolerated(0.16) benign(0.005) TCGA-60-2723-01 7 92979212 92979212 G - CCDC132 Frame_Shift_Del p.K778Nfs*7 0.19 TCGA-60-2723-01 7 94047117 94047117 G A COL1A2 Missense_Mutation p.G649S 0.41 unknown(0) TCGA-60-2723-01 7 94059610 94059610 C - COL1A2 Frame_Shift_Del p.P1336Hfs*33 0.25 TCGA-60-2723-01 8 104928746 104928746 G T RIMS2 Missense_Mutation p.V673L 0.04 tolerated_low_confidence(0.07) benign(0.008) TCGA-60-2723-01 8 110447466 110447466 C G PKHD1L1 Missense_Mutation p.P1130A 0.29 tolerated(0.06) benign(0.403) TCGA-60-2723-01 8 120431546 120431546 G A NOV Silent p.V246V 0.10 TCGA-60-2723-01 8 131812707 131812707 G A ADCY8 Missense_Mutation p.R1009C 0.26 deleterious(0) probably_damaging(1) TCGA-60-2723-01 8 131826349 131826349 G A ADCY8 Missense_Mutation p.A960V 0.21 deleterious(0.01) possibly_damaging(0.827) TCGA-60-2723-01 8 134232918 134232918 C A WISP1 Missense_Mutation p.D148E 0.18 tolerated(0.17) possibly_damaging(0.546) TCGA-60-2723-01 8 139164260 139164260 C T FAM135B Missense_Mutation p.G820R 0.31 tolerated_low_confidence(0.58) benign(0) TCGA-60-2723-01 8 139209863 139209863 C A FAM135B Missense_Mutation p.W240L 0.20 tolerated(0.11) benign(0.015) TCGA-60-2723-01 8 139890011 139890011 G C COL22A1 Missense_Mutation p.R214G 0.21 unknown(0) TCGA-60-2723-01 8 141799601 141799601 G T PTK2 Silent p.G383G 0.22 TCGA-60-2723-01 8 145657681 145657681 C A TONSL Missense_Mutation p.R1241L 0.24 deleterious(0.03) benign(0.131) TCGA-60-2723-01 8 25744281 25744281 G A EBF2 Silent p.F333F 0.41 TCGA-60-2723-01 8 48719888 48719888 C T PRKDC Splice_Site p.X3185_splice 0.34 TCGA-60-2723-01 8 57219251 57219251 C - SDR16C5 Frame_Shift_Del p.E232Kfs*23 0.23 TCGA-60-2723-01 8 67039349 67039349 C T TRIM55 5'UTR 0.19 TCGA-60-2723-01 8 77620259 77620259 C T ZFHX4 Silent p.H1023H 0.14 TCGA-60-2723-01 8 82196169 82196169 G T FABP5 Missense_Mutation p.S105I 0.15 deleterious(0.04) probably_damaging(0.999) TCGA-60-2723-01 8 94934294 94934294 G T PDP1 Missense_Mutation p.A28S 0.13 deleterious_low_confidence(0.03) benign(0.173) TCGA-60-2723-01 8 95412502 95412502 T C RAD54B Silent p.L378L 0.25 TCGA-60-2723-01 9 105767756 105767756 C G CYLC2 Missense_Mutation p.D281E 0.36 tolerated(0.29) unknown(0) TCGA-60-2723-01 9 118969826 118969826 G C PAPPA Missense_Mutation p.E524Q 0.34 deleterious(0.02) possibly_damaging(0.728) TCGA-60-2723-01 9 127652688 127652688 T C GOLGA1 Missense_Mutation p.R493G 0.43 deleterious(0.01) possibly_damaging(0.756) TCGA-60-2723-01 9 135140176 135140176 A G SETX Missense_Mutation p.L2495P 0.41 tolerated(0.36) benign(0.006) TCGA-60-2723-01 9 135863681 135863681 C A GFI1B Silent p.A112A 0.39 TCGA-60-2723-01 9 136582496 136582496 C G SARDH Missense_Mutation p.V368L 0.36 deleterious(0.01) possibly_damaging(0.612) TCGA-60-2723-01 9 21367977 21367977 G T IFNA13 Silent p.A11A 0.29 TCGA-60-2723-01 9 32631709 32631709 C A TAF1L Missense_Mutation p.G1290V 0.34 deleterious(0) probably_damaging(1) TCGA-60-2723-01 9 32631710 32631710 C A TAF1L Nonsense_Mutation p.G1290* 0.33 TCGA-60-2723-01 9 5090820 5090820 G C JAK2 Missense_Mutation p.V990L 0.80 deleterious(0) probably_damaging(0.997) TCGA-60-2723-01 9 95846984 95846984 G T SUSD3 Silent p.L241L 0.26 TCGA-60-2723-01 X 154158967 154158967 T A F8 Missense_Mutation p.H1033L 0.33 deleterious(0.02) benign(0.15) TCGA-60-2723-01 X 30737553 30737553 G A GK Missense_Mutation p.V352I 0.34 deleterious(0.02) benign(0.379) TCGA-60-2723-01 X 37660566 37660566 T - CYBB Frame_Shift_Del p.W289Gfs*24 0.15 TCGA-60-2723-01 X 41307170 41307170 C A NYX Missense_Mutation p.L10I 0.07 tolerated_low_confidence(0.66) possibly_damaging(0.636) TCGA-60-2723-01 X 47072255 47072255 G A UBA1 Missense_Mutation p.R880Q 0.17 deleterious(0.02) benign(0.292) TCGA-60-2723-01 X 47101681 47101681 G T USP11 Missense_Mutation p.M503I 0.35 tolerated(0.13) possibly_damaging(0.823) TCGA-60-2723-01 X 50127723 50127723 C A DGKK RNA 0.36 TCGA-60-2723-01 X 77244009 77244009 C T ATP7A Missense_Mutation p.P131L 0.38 deleterious(0) possibly_damaging(0.891) TCGA-60-2724-01 10 102987419 102987419 G A LBX1 Missense_Mutation p.P152S 0.14 deleterious(0) probably_damaging(1) TCGA-60-2724-01 10 112327490 112327490 G T SMC3 5'UTR 0.16 TCGA-60-2724-01 10 128147646 128147646 G T C10orf90 Silent p.T620T 0.32 TCGA-60-2724-01 10 135053756 135053756 G T VENTX Silent p.L241L 0.28 TCGA-60-2724-01 10 15655666 15655666 C A ITGA8 Missense_Mutation p.A516S 0.17 deleterious(0.01) benign(0.099) TCGA-60-2724-01 10 38654507 38654507 A C HSD17B7P2 RNA 0.25 TCGA-60-2724-01 10 44139991 44139991 C A ZNF32 Missense_Mutation p.C110F 0.20 deleterious(0) probably_damaging(1) TCGA-60-2724-01 10 90486621 90486621 C A LIPK Missense_Mutation p.L59I 0.32 tolerated(0.07) probably_damaging(0.957) TCGA-60-2724-01 10 92509212 92509212 C T HTR7 Missense_Mutation p.D227N 0.23 tolerated(0.16) possibly_damaging(0.83) TCGA-60-2724-01 10 96522558 96522558 C A CYP2C19 Silent p.G32G 0.26 TCGA-60-2724-01 10 98092315 98092315 C A DNTT Missense_Mutation p.R441S 0.23 deleterious(0.01) benign(0.098) TCGA-60-2724-01 10 99683113 99683113 G T CRTAC1 Silent p.R156R 0.27 TCGA-60-2724-01 11 105804490 105804490 C A GRIA4 Silent p.R697R 0.21 TCGA-60-2724-01 11 113679924 113679924 C A USP28 Silent p.V675V 0.12 TCGA-60-2724-01 11 117306504 117306504 G T DSCAML1 Missense_Mutation p.P1638T 0.15 deleterious(0.04) probably_damaging(0.996) TCGA-60-2724-01 11 124875010 124875010 A G CCDC15 Silent p.Q771Q 0.33 TCGA-60-2724-01 11 126176543 126176543 G T DCPS Missense_Mutation p.V94L 0.21 tolerated(0.77) benign(0.002) TCGA-60-2724-01 11 134114850 134114850 G T VPS26B Missense_Mutation p.R247L 0.11 deleterious(0) possibly_damaging(0.863) TCGA-60-2724-01 11 18793525 18793525 G T PTPN5 5'UTR 0.32 TCGA-60-2724-01 11 55406221 55406221 T C OR4P4 Missense_Mutation p.Y130H 0.25 deleterious(0) probably_damaging(1) TCGA-60-2724-01 11 55406499 55406499 C A OR4P4 Silent p.T222T 0.32 TCGA-60-2724-01 11 55563225 55563225 T A OR5D14 Missense_Mutation p.L65H 0.28 deleterious(0) probably_damaging(0.997) TCGA-60-2724-01 11 55761370 55761370 G T OR5F1 Missense_Mutation p.H244Q 0.16 deleterious(0) probably_damaging(1) TCGA-60-2724-01 11 56345080 56345080 C A OR5M10 Missense_Mutation p.A40S 0.20 tolerated(0.08) benign(0.014) TCGA-60-2724-01 11 57886859 57886859 G T OR9I1 Missense_Mutation p.H20N 0.07 tolerated(0.42) benign(0.13) TCGA-60-2724-01 11 57947632 57947632 C A OR9Q1 Missense_Mutation p.T239N 0.12 deleterious(0) probably_damaging(1) TCGA-60-2724-01 11 60268610 60268610 C A MS4A12 Silent p.A123A 0.23 TCGA-60-2724-01 11 61165333 61165333 A T TMEM216 Missense_Mutation p.Y106F 0.27 tolerated(0.96) benign(0.094) TCGA-60-2724-01 11 62655847 62655847 G A SLC3A2 Silent p.R526R 0.36 TCGA-60-2724-01 11 64028885 64028885 G T PLCB3 Missense_Mutation p.S582I 0.10 tolerated(0.15) probably_damaging(0.973) TCGA-60-2724-01 11 64418069 64418069 A T NRXN2 Nonsense_Mutation p.L987* 0.18 TCGA-60-2724-01 11 65547170 65547170 C A AP5B1 Missense_Mutation p.R265L 0.23 deleterious(0.01) possibly_damaging(0.524) TCGA-60-2724-01 11 71189499 71189499 C A NADSYN1 Nonsense_Mutation p.S286* 0.21 TCGA-60-2724-01 11 75298590 75298590 G T MAP6 Silent p.A652A 0.12 TCGA-60-2724-01 11 771358 771358 C T PDDC1 Silent p.V173V 0.27 TCGA-60-2724-01 11 92714979 92714979 G A MTNR1B Missense_Mutation p.S197N 0.28 tolerated(0.28) benign(0.35) TCGA-60-2724-01 11 94230139 94230139 G C ANKRD49 Intron 0.08 TCGA-60-2724-01 11 94704172 94704172 G A CWC15 Missense_Mutation p.A101V 0.33 tolerated(0.11) possibly_damaging(0.866) TCGA-60-2724-01 12 104089553 104089553 C T STAB2 Silent p.A1171A 0.23 TCGA-60-2724-01 12 107372288 107372288 C T MTERFD3 Missense_Mutation p.V69I 0.33 deleterious(0.03) probably_damaging(0.998) TCGA-60-2724-01 12 109095058 109095058 C A CORO1C Missense_Mutation p.V13L 0.19 deleterious(0) probably_damaging(0.922) TCGA-60-2724-01 12 113556992 113556992 G T RASAL1 Missense_Mutation p.P195T 0.37 tolerated(0.58) benign(0.013) TCGA-60-2724-01 12 122277622 122277622 G T HPD 3'UTR 0.23 TCGA-60-2724-01 12 122669155 122669155 G T LRRC43 Silent p.T80T 0.32 TCGA-60-2724-01 12 123060176 123060176 G T KNTC1 Silent p.L823L 0.22 TCGA-60-2724-01 12 12312765 12312765 G - LRP6 Frame_Shift_Del p.L805Ffs*10 0.21 TCGA-60-2724-01 12 1292459 1292459 G A ERC1 Missense_Mutation p.D677N 0.27 deleterious(0.03) possibly_damaging(0.79) TCGA-60-2724-01 12 130184949 130184949 A T TMEM132D Missense_Mutation p.L125H 0.26 deleterious(0) possibly_damaging(0.638) TCGA-60-2724-01 12 130185002 130185002 G T TMEM132D Silent p.P107P 0.24 TCGA-60-2724-01 12 14804949 14804950 - T GUCY2C Frame_Shift_Ins p.D517Rfs*6 0.17 TCGA-60-2724-01 12 14849359 14849359 C T GUCY2C Silent p.L8L 0.25 TCGA-60-2724-01 12 18854483 18854483 T A PLCZ1 Missense_Mutation p.E323D 0.15 tolerated(0.4) benign(0.15) TCGA-60-2724-01 12 21926429 21926429 C T KCNJ8 Missense_Mutation p.G41E 0.21 deleterious(0) probably_damaging(1) TCGA-60-2724-01 12 26810795 26810795 C A ITPR2 Missense_Mutation p.M679I 0.24 tolerated(0.47) benign(0) TCGA-60-2724-01 12 2994555 2994555 G T RHNO1 Missense_Mutation p.R8L 0.22 tolerated(0.32) benign(0.267) TCGA-60-2724-01 12 31944837 31944837 G T H3F3C Silent p.A88A 0.19 TCGA-60-2724-01 12 40114729 40114730 - A C12orf40 Frame_Shift_Ins p.I547Nfs*6 0.20 TCGA-60-2724-01 12 40115163 40115163 A G C12orf40 3'UTR 0.33 TCGA-60-2724-01 12 41957357 41957357 G T PDZRN4 Missense_Mutation p.G458V 0.12 deleterious(0) probably_damaging(1) TCGA-60-2724-01 12 43945642 43945642 G T ADAMTS20 Missense_Mutation p.P28H 0.19 deleterious(0) probably_damaging(1) TCGA-60-2724-01 12 53343127 53343127 G A KRT18 Missense_Mutation p.G57D 0.06 tolerated(0.07) benign(0.016) TCGA-60-2724-01 12 64057611 64057611 G A DPY19L2 Missense_Mutation p.T126I 0.25 tolerated(0.12) benign(0.248) TCGA-60-2724-01 12 66152058 66152058 C T RPSAP52 RNA 0.19 TCGA-60-2724-01 12 70070741 70070741 G T BEST3 Silent p.P274P 0.14 TCGA-60-2724-01 12 70760767 70760767 G C KCNMB4 Missense_Mutation p.V85L 0.12 tolerated(1) benign(0.002) TCGA-60-2724-01 12 79693310 79693310 G T SYT1 Silent p.L263L 0.27 TCGA-60-2724-01 12 8757847 8757847 G C AICDA Missense_Mutation p.R131G 0.16 tolerated(0.54) benign(0.262) TCGA-60-2724-01 13 21361694 21361694 G A XPO4 Missense_Mutation p.P1031S 0.28 tolerated(0.19) benign(0.012) TCGA-60-2724-01 13 70456586 70456586 G T KLHL1 Silent p.L352L 0.34 TCGA-60-2724-01 13 95278296 95278296 A T GPR180 Missense_Mutation p.K388M 0.23 deleterious(0) probably_damaging(0.998) TCGA-60-2724-01 14 100603959 100603959 C G EVL Missense_Mutation p.P337A 0.40 tolerated(0.1) probably_damaging(0.999) TCGA-60-2724-01 14 106757699 106757699 A T IGHV2-26 Missense_Mutation p.M103K 0.47 deleterious(0) possibly_damaging(0.65) TCGA-60-2724-01 14 20248545 20248545 G A OR4M1 Missense_Mutation p.E22K 0.35 tolerated(0.07) benign(0.009) TCGA-60-2724-01 14 20529020 20529020 G A OR4L1 Missense_Mutation p.V273I 0.50 tolerated(0.31) benign(0.26) TCGA-60-2724-01 14 23855646 23855646 C A MYH6 Missense_Mutation p.V1613F 0.50 deleterious(0) benign(0.009) TCGA-60-2724-01 14 27064669 27064669 T A NOVA1 Missense_Mutation p.Q76L 0.45 deleterious(0.01) unknown(0) TCGA-60-2724-01 14 71568781 71568781 C A PCNX Missense_Mutation p.N1888K 0.39 tolerated(1) possibly_damaging(0.887) TCGA-60-2724-01 14 72431529 72431529 T A RGS6 Missense_Mutation p.D7E 0.36 tolerated_low_confidence(0.23) benign(0.005) TCGA-60-2724-01 14 94914513 94914513 C T SERPINA11 Missense_Mutation p.S200N 0.47 tolerated(0.36) benign(0.003) TCGA-60-2724-01 15 20490589 20490589 G T CHEK2P2 Splice_Site 0.07 TCGA-60-2724-01 15 20496629 20496629 G T CHEK2P2 RNA 0.07 TCGA-60-2724-01 15 20657624 20657624 T A HERC2P3 RNA 0.10 TCGA-60-2724-01 15 23812614 23812614 A T MKRN3 3'UTR 0.28 TCGA-60-2724-01 15 25223422 25223422 C A SNRPN Silent p.G214G 0.23 TCGA-60-2724-01 15 25449367 25449367 T A SNORD115-20 5'Flank 0.21 TCGA-60-2724-01 15 27271912 27271912 G T GABRG3 Missense_Mutation p.V72L 0.22 tolerated(0.11) benign(0.387) TCGA-60-2724-01 15 28901144 28901144 G T HERC2P9 RNA 0.11 TCGA-60-2724-01 15 32929009 32929009 A T ARHGAP11A Missense_Mutation p.T679S 0.20 tolerated(0.47) benign(0.009) TCGA-60-2724-01 15 33842403 33842403 C - RYR3 Frame_Shift_Del p.R287Gfs*11 0.21 TCGA-60-2724-01 15 33927899 33927899 G T RYR3 Missense_Mutation p.W1087L 0.19 probably_damaging(1) TCGA-60-2724-01 15 35086886 35086886 G T ACTC1 Missense_Mutation p.H42N 0.26 tolerated_low_confidence(0.09) possibly_damaging(0.466) TCGA-60-2724-01 15 35198840 35198840 C A AQR Silent p.R579R 0.24 TCGA-60-2724-01 15 38243320 38243320 C A TMCO5A Missense_Mutation p.P251Q 0.22 deleterious(0) probably_damaging(1) TCGA-60-2724-01 15 41961148 41961148 G C MGA Missense_Mutation p.G19A 0.14 deleterious(0.02) possibly_damaging(0.685) TCGA-60-2724-01 15 42439900 42439900 C A PLA2G4F Missense_Mutation p.G374C 0.22 deleterious(0) probably_damaging(1) TCGA-60-2724-01 15 48594977 48594977 A T SLC12A1 Silent p.I1065I 0.19 TCGA-60-2724-01 15 49061206 49061206 C A CEP152 Missense_Mutation p.D619Y 0.22 deleterious(0) probably_damaging(0.983) TCGA-60-2724-01 15 50866531 50866531 C G TRPM7 Missense_Mutation p.A1750P 0.16 deleterious(0) probably_damaging(0.999) TCGA-60-2724-01 15 52667601 52667601 C G MYO5A Missense_Mutation p.R826P 0.19 deleterious(0) probably_damaging(0.965) TCGA-60-2724-01 15 53957876 53957876 T A WDR72 Missense_Mutation p.I619F 0.26 tolerated(0.22) benign(0.001) TCGA-60-2724-01 15 59377922 59377922 T C RNF111 Silent p.L839L 0.24 TCGA-60-2724-01 15 63952040 63952040 G C HERC1 Missense_Mutation p.R3107G 0.17 benign(0.426) TCGA-60-2724-01 15 66030127 66030127 G A DENND4A Missense_Mutation p.P320S 0.20 deleterious(0) probably_damaging(1) TCGA-60-2724-01 15 78471983 78471983 C A ACSBG1 Missense_Mutation p.G465C 0.25 deleterious(0) probably_damaging(0.996) TCGA-60-2724-01 15 79172853 79172853 G A MORF4L1 Splice_Site p.X30_splice 0.21 TCGA-60-2724-01 15 86311564 86311564 T C KLHL25 Missense_Mutation p.Q493R 0.28 tolerated(0.62) probably_damaging(0.988) TCGA-60-2724-01 16 20748507 20748507 C T THUMPD1 Missense_Mutation p.V253M 0.34 deleterious(0) probably_damaging(0.928) TCGA-60-2724-01 16 20994170 20994170 G T DNAH3 Silent p.R2578R 0.28 TCGA-60-2724-01 16 21261440 21261440 C T ANKS4B Missense_Mutation p.P185S 0.22 tolerated(0.49) benign(0.001) TCGA-60-2724-01 16 33647237 33647237 C T RP11-812E19.9 Silent p.R121R 0.22 TCGA-60-2724-01 16 34712192 34712192 G T RP11-80F22.9 RNA 0.33 TCGA-60-2724-01 16 48594820 48594820 C G N4BP1 Missense_Mutation p.R578S 0.23 tolerated(0.16) benign(0.08) TCGA-60-2724-01 16 57261270 57261270 G A RSPRY1 Missense_Mutation p.G393E 0.14 deleterious(0) probably_damaging(1) TCGA-60-2724-01 16 57734153 57734153 A G CCDC135 Missense_Mutation p.M159V 0.22 tolerated(0.07) benign(0.041) TCGA-60-2724-01 16 61689508 61689508 G T CDH8 Missense_Mutation p.T591N 0.19 deleterious(0) probably_damaging(0.997) TCGA-60-2724-01 16 68390608 68390608 G C PRMT7 Missense_Mutation p.G606R 0.27 deleterious(0) probably_damaging(0.921) TCGA-60-2724-01 16 71609830 71609830 G T TAT Missense_Mutation p.S112Y 0.20 deleterious(0) probably_damaging(0.99) TCGA-60-2724-01 16 822922 822922 C A MSLNL Missense_Mutation p.A755S 0.31 benign(0.155) TCGA-60-2724-01 16 841264 841264 G T CHTF18 Missense_Mutation p.R333L 0.44 deleterious(0.02) possibly_damaging(0.519) TCGA-60-2724-01 16 87393974 87393974 T G FBXO31 Splice_Site p.X114_splice 0.21 TCGA-60-2724-01 17 10446460 10446460 G T MYH2 Missense_Mutation p.H254N 0.22 deleterious(0) possibly_damaging(0.672) TCGA-60-2724-01 17 15234560 15234560 G T TEKT3 Missense_Mutation p.H115N 0.19 tolerated(0.4) benign(0.012) TCGA-60-2724-01 17 30302711 30302711 G - SUZ12 Frame_Shift_Del p.G268Efs*32 0.27 TCGA-60-2724-01 17 3101541 3101541 C G OR1A2 Missense_Mutation p.H243Q 0.25 deleterious(0) probably_damaging(1) TCGA-60-2724-01 17 38421267 38421267 A G WIPF2 Missense_Mutation p.H280R 0.21 tolerated(0.18) benign(0.264) TCGA-60-2724-01 17 41019698 41019698 C A AOC4P RNA 0.11 TCGA-60-2724-01 17 41955348 41955348 C T MPP2 Missense_Mutation p.A496T 0.30 tolerated(0.56) benign(0.057) TCGA-60-2724-01 17 46196335 46196335 G T SNX11 Splice_Site p.X109_splice 0.23 TCGA-60-2724-01 17 46925692 46925692 C T CALCOCO2 Silent p.L122L 0.28 TCGA-60-2724-01 17 48262882 48262882 C A COL1A1 Missense_Mutation p.G1459V 0.19 unknown(0) TCGA-60-2724-01 17 61908449 61908449 A G PSMC5 Missense_Mutation p.I245V 0.27 tolerated(0.06) benign(0.041) TCGA-60-2724-01 17 72443133 72443133 C G GPRC5C Missense_Mutation p.S476C 0.26 tolerated_low_confidence(0.19) benign(0.032) TCGA-60-2724-01 17 72700780 72700780 C T CD300LF Silent p.Q73Q 0.22 TCGA-60-2724-01 17 7577551 7577551 C A TP53 Missense_Mutation p.G244C 0.17 deleterious(0) probably_damaging(1) TCGA-60-2724-01 17 7801302 7801302 G T CHD3 Missense_Mutation p.G704W 0.22 probably_damaging(0.991) TCGA-60-2724-01 17 8926186 8926186 G T NTN1 Missense_Mutation p.D166Y 0.10 deleterious(0) probably_damaging(0.995) TCGA-60-2724-01 18 12344181 12344181 C A AFG3L2 Missense_Mutation p.G577C 0.23 deleterious(0) probably_damaging(0.999) TCGA-60-2724-01 18 13104996 13104996 G C CEP192 Missense_Mutation p.S2322T 0.16 tolerated(0.29) benign(0.133) TCGA-60-2724-01 18 19751055 19751055 C T GATA6 Intron 0.24 TCGA-60-2724-01 18 22804449 22804449 C A ZNF521 Missense_Mutation p.V1145F 0.23 deleterious(0.01) benign(0.067) TCGA-60-2724-01 18 30350379 30350379 C G KLHL14 Missense_Mutation p.R59P 0.25 deleterious(0) benign(0.022) TCGA-60-2724-01 18 46287933 46287933 G C CTIF Missense_Mutation p.R417P 0.24 tolerated(0.06) benign(0.373) TCGA-60-2724-01 18 47088747 47088747 A C LIPG Silent p.V23V 0.20 TCGA-60-2724-01 18 48255612 48255612 G T MAPK4 Silent p.A384A 0.28 TCGA-60-2724-01 18 5891956 5891956 T C TMEM200C Missense_Mutation p.K36R 0.26 tolerated(0.18) probably_damaging(0.973) TCGA-60-2724-01 18 5956349 5956349 G C L3MBTL4 Missense_Mutation p.T581R 0.17 tolerated(0.25) benign(0.186) TCGA-60-2724-01 18 6243368 6243368 T A L3MBTL4 Missense_Mutation p.T129S 0.16 deleterious(0.03) possibly_damaging(0.832) TCGA-60-2724-01 18 6243369 6243369 C T L3MBTL4 Nonsense_Mutation p.W128* 0.16 TCGA-60-2724-01 18 6986250 6986250 T A LAMA1 Silent p.S1755S 0.20 TCGA-60-2724-01 18 74980855 74980855 G A GALR1 Silent p.V349V 0.17 TCGA-60-2724-01 18 76752262 76752262 C A SALL3 Missense_Mutation p.P91T 0.25 tolerated(0.15) unknown(0) TCGA-60-2724-01 18 8069965 8069965 G T PTPRM Nonsense_Mutation p.E472* 0.20 TCGA-60-2724-01 19 10204093 10204093 C G ANGPTL6 Missense_Mutation p.G385A 0.24 deleterious(0) probably_damaging(1) TCGA-60-2724-01 19 10798245 10798245 G C ILF3 Missense_Mutation p.Q765H 0.13 tolerated(0.08) unknown(0) TCGA-60-2724-01 19 11215997 11215997 G C LDLR Missense_Mutation p.D139H 0.22 deleterious(0) probably_damaging(1) TCGA-60-2724-01 19 12061219 12061219 G T ZNF700 3'UTR 0.27 TCGA-60-2724-01 19 1556842 1556842 C A MEX3D Missense_Mutation p.V226L 0.20 deleterious(0.02) possibly_damaging(0.792) TCGA-60-2724-01 19 15770052 15770052 G C CYP4F3 Missense_Mutation p.A474P 0.15 deleterious(0) probably_damaging(0.999) TCGA-60-2724-01 19 15989724 15989724 C G CYP4F2 Missense_Mutation p.A474P 0.06 deleterious(0) probably_damaging(0.998) TCGA-60-2724-01 19 17534842 17534842 A C MVB12A Missense_Mutation p.H223P 0.18 deleterious(0) probably_damaging(0.952) TCGA-60-2724-01 19 17838455 17838455 A T MAP1S Silent p.A754A 0.13 TCGA-60-2724-01 19 22941177 22941177 C G ZNF99 Missense_Mutation p.E512Q 0.20 tolerated(0.14) probably_damaging(0.999) TCGA-60-2724-01 19 23543371 23543371 C A ZNF91 Missense_Mutation p.G804C 0.20 deleterious(0) probably_damaging(0.973) TCGA-60-2724-01 19 30500243 30500243 A G URI1 Missense_Mutation p.T340A 0.13 deleterious(0.02) benign(0.224) TCGA-60-2724-01 19 34945244 34945244 G C UBA2 Missense_Mutation p.R373T 0.21 deleterious(0.01) possibly_damaging(0.565) TCGA-60-2724-01 19 38948829 38948829 C T RYR1 Silent p.T688T 0.25 TCGA-60-2724-01 19 4282913 4282913 A T SHD Missense_Mutation p.H115L 0.19 tolerated(0.05) benign(0.001) TCGA-60-2724-01 19 46997151 46997151 C A PNMAL2 Missense_Mutation p.E524D 0.10 tolerated_low_confidence(0.1) unknown(0) TCGA-60-2724-01 19 48976622 48976622 G T CYTH2 Missense_Mutation p.V141L 0.15 deleterious(0.02) benign(0.041) TCGA-60-2724-01 19 49937935 49937935 G C SLC17A7 Nonsense_Mutation p.Y187* 0.18 TCGA-60-2724-01 19 50840805 50840805 A G NAPSB RNA 0.20 TCGA-60-2724-01 19 50978640 50978640 G A FAM71E1 Missense_Mutation p.P145S 0.31 deleterious(0) probably_damaging(0.999) TCGA-60-2724-01 19 51021789 51021789 A C LRRC4B Missense_Mutation p.V394G 0.18 deleterious(0) probably_damaging(0.99) TCGA-60-2724-01 19 51330015 51330015 T A KLK15 Splice_Site p.X161_splice 0.31 TCGA-60-2724-01 19 5133937 5133937 C T KDM4B Silent p.D650D 0.22 TCGA-60-2724-01 19 53669097 53669097 T A ZNF665 Missense_Mutation p.T216S 0.27 tolerated(0.81) benign(0.002) TCGA-60-2724-01 19 54410101 54410101 C T PRKCG Silent p.H682H 0.15 TCGA-60-2724-01 19 54466449 54466449 G A CACNG8 Missense_Mutation p.G18E 0.28 deleterious(0) probably_damaging(0.972) TCGA-60-2724-01 19 54745734 54745734 G A LILRA6 Missense_Mutation p.L126F 0.15 deleterious(0.03) possibly_damaging(0.88) TCGA-60-2724-01 19 57286498 57286498 C A ZIM2 Missense_Mutation p.R381M 0.26 deleterious(0) possibly_damaging(0.626) TCGA-60-2724-01 19 58420710 58420710 A C ZNF417 Missense_Mutation p.I312M 0.19 deleterious(0.03) possibly_damaging(0.889) TCGA-60-2724-01 19 58762739 58762739 G T ZNF544 Intron 0.23 TCGA-60-2724-01 19 5978137 5978137 G T RANBP3 5'UTR 0.11 TCGA-60-2724-01 19 8136993 8136993 C T FBN3 Missense_Mutation p.C2676Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-60-2724-01 19 8670562 8670562 G T ADAMTS10 Missense_Mutation p.L12I 0.29 deleterious(0.04) benign(0.066) TCGA-60-2724-01 19 8966671 8966671 T C MUC16 Missense_Mutation p.R14428G 0.29 probably_damaging(0.994) TCGA-60-2724-01 19 9639140 9639140 T C ZNF426 Silent p.T527T 0.26 TCGA-60-2724-01 1 1019531 1019531 C A C1orf159 Intron 0.18 TCGA-60-2724-01 1 10336408 10336408 G T KIF1B Missense_Mutation p.A324S 0.18 deleterious(0.01) possibly_damaging(0.885) TCGA-60-2724-01 1 107691053 107691053 G T NTNG1 5'UTR 0.38 TCGA-60-2724-01 1 109779943 109779943 G C SARS Missense_Mutation p.Q445H 0.19 deleterious(0) probably_damaging(0.992) TCGA-60-2724-01 1 110557398 110557398 C T AHCYL1 Silent p.F198F 0.20 TCGA-60-2724-01 1 111494237 111494237 C G LRIF1 Missense_Mutation p.Q423H 0.22 deleterious(0.01) possibly_damaging(0.891) TCGA-60-2724-01 1 111737211 111737211 C A DENND2D Silent p.A261A 0.14 TCGA-60-2724-01 1 120295926 120295926 C A HMGCS2 Missense_Mutation p.R424L 0.20 deleterious(0.01) benign(0.31) TCGA-60-2724-01 1 12175713 12175713 A G TNFRSF8 Silent p.T291T 0.19 TCGA-60-2724-01 1 12401886 12401886 G C VPS13D Silent p.L2892L 0.17 TCGA-60-2724-01 1 12921377 12921377 T C PRAMEF2 Missense_Mutation p.S390P 0.21 deleterious(0.01) possibly_damaging(0.826) TCGA-60-2724-01 1 152191986 152191986 A T HRNR Missense_Mutation p.S707T 0.20 unknown(0) TCGA-60-2724-01 1 152193528 152193528 C A HRNR Missense_Mutation p.G193C 0.24 unknown(0) TCGA-60-2724-01 1 152282838 152282838 T G FLG Silent p.S1508S 0.49 TCGA-60-2724-01 1 152284000 152284000 A G FLG Missense_Mutation p.V1121A 0.47 benign(0.153) TCGA-60-2724-01 1 152325501 152325501 C T FLG2 Silent p.G1587G 0.24 TCGA-60-2724-01 1 154544213 154544213 T C CHRNB2 Missense_Mutation p.M305T 0.15 deleterious(0) probably_damaging(1) TCGA-60-2724-01 1 157771929 157771929 A T FCRL1 Missense_Mutation p.V221E 0.24 tolerated(0.06) possibly_damaging(0.734) TCGA-60-2724-01 1 161519710 161519710 C T FCGR3A 5'UTR 0.23 TCGA-60-2724-01 1 16344354 16344354 C A HSPB7 Silent p.P35P 0.22 TCGA-60-2724-01 1 164769081 164769081 C T PBX1 Missense_Mutation p.T219M 0.27 deleterious(0) probably_damaging(1) TCGA-60-2724-01 1 169529825 169529825 C T F5 Missense_Mutation p.G185R 0.18 deleterious(0) probably_damaging(1) TCGA-60-2724-01 1 180063614 180063614 G C CEP350 Missense_Mutation p.D2792H 0.23 benign(0.013) TCGA-60-2724-01 1 192548421 192548421 T G RGS1 Missense_Mutation p.L200R 0.14 deleterious(0) possibly_damaging(0.882) TCGA-60-2724-01 1 193150016 193150016 T G B3GALT2 Missense_Mutation p.N226T 0.25 deleterious(0) probably_damaging(1) TCGA-60-2724-01 1 196871618 196871618 C A CFHR4 Nonsense_Mutation p.Y42* 0.18 TCGA-60-2724-01 1 197021830 197021830 G A F13B Missense_Mutation p.P497S 0.24 tolerated(0.75) benign(0.006) TCGA-60-2724-01 1 197390692 197390692 G T CRB1 Silent p.V578V 0.18 TCGA-60-2724-01 1 198704329 198704329 A G PTPRC Missense_Mutation p.N784S 0.30 tolerated(0.14) benign(0.144) TCGA-60-2724-01 1 200635655 200635655 C G DDX59 Missense_Mutation p.V72L 0.19 tolerated_low_confidence(0.6) benign(0.017) TCGA-60-2724-01 1 203054989 203054989 C G MYOG Missense_Mutation p.G34A 0.27 tolerated(1) benign(0.315) TCGA-60-2724-01 1 203134447 203134447 C T ADORA1 Missense_Mutation p.L134F 0.19 deleterious(0.01) benign(0.085) TCGA-60-2724-01 1 20417323 20417323 G C PLA2G5 3'UTR 0.25 TCGA-60-2724-01 1 204955131 204955131 G A NFASC Intron 0.23 TCGA-60-2724-01 1 215813994 215813994 G A USH2A Silent p.N4958N 0.27 TCGA-60-2724-01 1 215848658 215848658 C G USH2A Missense_Mutation p.A4199P 0.20 benign(0.022) TCGA-60-2724-01 1 228563434 228563434 C A OBSCN Silent p.I8522I 0.25 TCGA-60-2724-01 1 231503323 231503323 T C EGLN1 Missense_Mutation p.Y403C 0.18 deleterious(0) probably_damaging(0.992) TCGA-60-2724-01 1 236908036 236908036 G T ACTN2 Missense_Mutation p.D456Y 0.25 deleterious(0) probably_damaging(0.991) TCGA-60-2724-01 1 236920893 236920893 G A ACTN2 Silent p.Q754Q 0.24 TCGA-60-2724-01 1 24201704 24201704 A T CNR2 Missense_Mutation p.L135Q 0.20 deleterious(0) probably_damaging(0.997) TCGA-60-2724-01 1 248031147 248031147 G T TRIM58 Missense_Mutation p.G250C 0.20 deleterious(0.02) possibly_damaging(0.75) TCGA-60-2724-01 1 248059533 248059533 G C OR2W3 Silent p.L215L 0.22 TCGA-60-2724-01 1 34401428 34401428 G A CSMD2 Silent p.A175A 0.25 TCGA-60-2724-01 1 35260622 35260622 G T GJA4 Missense_Mutation p.G270C 0.26 tolerated(0.17) benign(0.415) TCGA-60-2724-01 1 35580300 35580300 A T ZMYM1 Missense_Mutation p.T957S 0.19 tolerated(0.25) benign(0.043) TCGA-60-2724-01 1 39878642 39878642 C G KIAA0754 Nonsense_Mutation p.S766* 0.14 TCGA-60-2724-01 1 42048060 42048060 G A HIVEP3 Silent p.T803T 0.29 TCGA-60-2724-01 1 43777413 43777413 G C TIE1 Missense_Mutation p.V469L 0.17 tolerated(0.75) benign(0.209) TCGA-60-2724-01 1 53122610 53122610 C T FAM159A Silent p.L157L 0.24 TCGA-60-2724-01 1 6592658 6592658 C G NOL9 Missense_Mutation p.R467P 0.20 deleterious(0) probably_damaging(0.986) TCGA-60-2724-01 1 67147612 67147612 A G SGIP1 Missense_Mutation p.D292G 0.17 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-60-2724-01 1 70385379 70385379 C A LRRC7 Intron 0.26 TCGA-60-2724-01 1 75107037 75107037 C T C1orf173 Missense_Mutation p.G141E 0.23 tolerated(0.07) benign(0.31) TCGA-60-2724-01 1 79356811 79356811 A T ELTD1 3'UTR 0.22 TCGA-60-2724-01 1 84403661 84403661 G T TTLL7 Missense_Mutation p.N254K 0.23 deleterious(0) probably_damaging(1) TCGA-60-2724-01 1 84791331 84791331 A G SAMD13 Missense_Mutation p.N36S 0.20 tolerated(0.23) probably_damaging(0.98) TCGA-60-2724-01 1 91779026 91779026 T C HFM1 Missense_Mutation p.T1091A 0.20 tolerated(0.13) benign(0.013) TCGA-60-2724-01 1 94016691 94016691 G T FNBP1L Intron 0.18 TCGA-60-2724-01 1 94490552 94490552 G A ABCA4 Missense_Mutation p.S1531F 0.18 deleterious(0.01) probably_damaging(0.933) TCGA-60-2724-01 20 1961207 1961207 C T PDYN Missense_Mutation p.G176E 0.26 deleterious(0) probably_damaging(1) TCGA-60-2724-01 20 23472292 23472292 T C CST8 5'UTR 0.19 TCGA-60-2724-01 20 30527060 30527060 A G TTLL9 Missense_Mutation p.T412A 0.25 deleterious(0.02) benign(0.387) TCGA-60-2724-01 20 30825479 30825479 G T POFUT1 3'UTR 0.22 TCGA-60-2724-01 20 31600616 31600616 A T BPIFB2 Missense_Mutation p.I71F 0.24 deleterious(0) possibly_damaging(0.851) TCGA-60-2724-01 20 39991029 39991029 G T EMILIN3 Missense_Mutation p.R394S 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-60-2724-01 20 4162950 4162950 G T SMOX Missense_Mutation p.G275V 0.26 tolerated(0.36) benign(0.423) TCGA-60-2724-01 20 44442005 44442005 G T UBE2C Intron 0.21 TCGA-60-2724-01 20 60926760 60926760 C A LAMA5 Missense_Mutation p.R319M 0.32 probably_damaging(0.998) TCGA-60-2724-01 21 30419000 30419000 C T USP16 Nonsense_Mutation p.Q457* 0.19 TCGA-60-2724-01 21 35260641 35260641 C T ITSN1 3'UTR 0.27 TCGA-60-2724-01 21 41447126 41447126 G T DSCAM Missense_Mutation p.L1576I 0.25 tolerated(0.19) benign(0.058) TCGA-60-2724-01 21 42749718 42749718 G T MX2 Silent p.G84G 0.17 TCGA-60-2724-01 21 43531420 43531420 G A UMODL1 Silent p.A696A 0.29 TCGA-60-2724-01 21 45945684 45945684 C A TSPEAR Missense_Mutation p.K396N 0.23 tolerated(0.21) benign(0.222) TCGA-60-2724-01 22 19968948 19968948 T G ARVCF Missense_Mutation p.T228P 0.36 tolerated(0.12) probably_damaging(0.996) TCGA-60-2724-01 22 37333595 37333595 A T CSF2RB Missense_Mutation p.K582I 0.25 deleterious(0.04) benign(0.067) TCGA-60-2724-01 2 103414439 103414439 G A TMEM182 Missense_Mutation p.G150E 0.13 deleterious(0.03) probably_damaging(0.999) TCGA-60-2724-01 2 108487172 108487172 T C RGPD4 Silent p.N904N 0.11 TCGA-60-2724-01 2 113147558 113147558 T - RGPD8 Frame_Shift_Del p.D989Tfs*52 0.12 TCGA-60-2724-01 2 113537242 113537242 T C IL1A Silent p.E107E 0.26 TCGA-60-2724-01 2 113670672 113670672 G A IL37 Splice_Site p.X28_splice 0.21 TCGA-60-2724-01 2 113959138 113959138 G T PSD4 3'UTR 0.20 TCGA-60-2724-01 2 113993138 113993138 A G PAX8 Missense_Mutation p.I307T 0.16 tolerated(0.15) benign(0.039) TCGA-60-2724-01 2 120438821 120438821 G T TMEM177 Missense_Mutation p.W131L 0.11 deleterious(0) probably_damaging(0.998) TCGA-60-2724-01 2 162851470 162851470 C T DPP4 Splice_Site p.X733_splice 0.19 TCGA-60-2724-01 2 166771833 166771833 C A TTC21B Silent p.R672R 0.11 TCGA-60-2724-01 2 167301443 167301443 C G SCN7A Missense_Mutation p.W485C 0.07 deleterious(0) probably_damaging(0.999) TCGA-60-2724-01 2 170061990 170061990 G C LRP2 Missense_Mutation p.L2572V 0.16 probably_damaging(0.917) TCGA-60-2724-01 2 170070273 170070273 T A LRP2 Missense_Mutation p.E1978D 0.20 benign(0.003) TCGA-60-2724-01 2 178576540 178576540 G A PDE11A Missense_Mutation p.H704Y 0.12 deleterious(0) benign(0.258) TCGA-60-2724-01 2 179433541 179433541 G A TTN Missense_Mutation p.A25773V 0.29 TCGA-60-2724-01 2 179499517 179499517 C G TTN Silent p.L14028L 0.18 TCGA-60-2724-01 2 179632878 179632878 A - TTN Frame_Shift_Del p.H3057Ifs*2 0.27 TCGA-60-2724-01 2 191760377 191760377 G A GLS Silent p.E177E 0.11 TCGA-60-2724-01 2 196545509 196545509 C G SLC39A10 Missense_Mutation p.T248R 0.20 tolerated(0.11) benign(0.199) TCGA-60-2724-01 2 198950309 198950309 G T PLCL1 Nonsense_Mutation p.G690* 0.13 TCGA-60-2724-01 2 200137379 200137379 T A SATB2 Missense_Mutation p.Q586L 0.10 tolerated(0.12) benign(0.009) TCGA-60-2724-01 2 201436332 201436332 A C SGOL2 Silent p.S421S 0.08 TCGA-60-2724-01 2 201436333 201436333 G T SGOL2 Missense_Mutation p.D422Y 0.08 tolerated(0.13) possibly_damaging(0.854) TCGA-60-2724-01 2 201436386 201436386 G T SGOL2 Silent p.L439L 0.29 TCGA-60-2724-01 2 20174337 20174337 T G WDR35 Missense_Mutation p.I210L 0.49 tolerated(0.67) benign(0.051) TCGA-60-2724-01 2 20463042 20463042 C A PUM2 Missense_Mutation p.D713Y 0.49 deleterious(0) probably_damaging(0.999) TCGA-60-2724-01 2 207170059 207170059 G T ZDBF2 Missense_Mutation p.L269F 0.11 deleterious(0.01) possibly_damaging(0.587) TCGA-60-2724-01 2 210559329 210559329 T C MAP2 Missense_Mutation p.L812P 0.18 deleterious(0) probably_damaging(1) TCGA-60-2724-01 2 220110800 220110800 G T STK16 Missense_Mutation p.G27W 0.25 deleterious(0) probably_damaging(0.988) TCGA-60-2724-01 2 233390970 233390970 G T CHRND Silent p.A15A 0.23 TCGA-60-2724-01 2 234371076 234371076 C T DGKD Missense_Mutation p.R1022C 0.16 deleterious(0.01) possibly_damaging(0.462) TCGA-60-2724-01 2 234545877 234545877 A G UGT1A10 Missense_Mutation p.T237A 0.24 deleterious(0.02) benign(0.03) TCGA-60-2724-01 2 238277605 238277605 C T COL6A3 Missense_Mutation p.D1501N 0.17 benign(0.058) TCGA-60-2724-01 2 239147898 239147898 C T HES6 Intron 0.15 TCGA-60-2724-01 2 32730095 32730095 A T BIRC6 Missense_Mutation p.T3175S 0.37 benign(0.172) TCGA-60-2724-01 2 43927520 43927520 G T PLEKHH2 Missense_Mutation p.A475S 0.47 tolerated(0.08) benign(0.272) TCGA-60-2724-01 2 64069541 64069541 G C UGP2 Intron 0.45 TCGA-60-2724-01 2 79350273 79350273 G C REG1A Splice_Site p.X145_splice 0.49 TCGA-60-2724-01 2 79971590 79971590 A G CTNNA2 Silent p.L60L 0.44 TCGA-60-2724-01 2 90108944 90108944 A T IGKV6D-41 Missense_Mutation p.Y70F 0.53 tolerated(0.65) benign(0.019) TCGA-60-2724-01 2 90260137 90260137 C T IGKV1D-8 Silent p.V80V 0.46 TCGA-60-2724-01 2 96781149 96781149 T C ADRA2B Missense_Mutation p.N247S 0.17 tolerated(0.13) benign(0.034) TCGA-60-2724-01 3 100275728 100275728 G T TMEM45A Missense_Mutation p.L105F 0.21 tolerated(0.19) benign(0.016) TCGA-60-2724-01 3 126734135 126734135 G T PLXNA1 Missense_Mutation p.V996F 0.22 tolerated(0.46) benign(0.009) TCGA-60-2724-01 3 126734145 126734145 G T PLXNA1 Missense_Mutation p.R999L 0.25 tolerated(0.54) benign(0.019) TCGA-60-2724-01 3 147128840 147128840 C G ZIC1 Missense_Mutation p.A314G 0.23 deleterious(0.03) possibly_damaging(0.701) TCGA-60-2724-01 3 160232932 160232932 A T KPNA4 Intron 0.24 TCGA-60-2724-01 3 165548316 165548316 A G BCHE Missense_Mutation p.V169A 0.16 deleterious(0) probably_damaging(0.988) TCGA-60-2724-01 3 178952079 178952079 A T PIK3CA Missense_Mutation p.D1045V 0.13 deleterious(0.02) possibly_damaging(0.475) TCGA-60-2724-01 3 180334353 180334353 A G CCDC39 Missense_Mutation p.I846T 0.19 tolerated(0.56) benign(0.001) TCGA-60-2724-01 3 196793577 196793577 T A DLG1 Missense_Mutation p.E732V 0.08 deleterious(0) probably_damaging(0.999) TCGA-60-2724-01 3 49314221 49314221 C A C3orf62 Missense_Mutation p.D29Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-60-2724-01 3 58179013 58179013 C A DNASE1L3 Intron 0.06 TCGA-60-2724-01 3 8671372 8671372 C T SSUH2 Missense_Mutation p.S189N 0.12 tolerated(0.11) possibly_damaging(0.888) TCGA-60-2724-01 3 97251259 97251259 C A EPHA6 Missense_Mutation p.P753Q 0.19 tolerated(0.27) possibly_damaging(0.735) TCGA-60-2724-01 4 101984428 101984428 C A PPP3CA Missense_Mutation p.D348Y 0.33 deleterious(0) probably_damaging(0.967) TCGA-60-2724-01 4 102946403 102946403 G T BANK1 Missense_Mutation p.G444V 0.24 tolerated(0.28) benign(0.009) TCGA-60-2724-01 4 110980846 110980846 G T ELOVL6 Missense_Mutation p.Q96K 0.42 tolerated(0.07) benign(0.008) TCGA-60-2724-01 4 111427862 111427862 T A ENPEP Missense_Mutation p.F330I 0.21 tolerated(0.24) probably_damaging(0.953) TCGA-60-2724-01 4 118005974 118005974 G T TRAM1L1 Missense_Mutation p.D192E 0.25 tolerated(0.78) benign(0.107) TCGA-60-2724-01 4 126238488 126238488 C T FAT4 Missense_Mutation p.R308W 0.30 probably_damaging(0.978) TCGA-60-2724-01 4 153897162 153897162 C T FHDC1 Missense_Mutation p.P907S 0.06 tolerated(0.05) possibly_damaging(0.85) TCGA-60-2724-01 4 15627424 15627424 T C FBXL5 Missense_Mutation p.K434R 0.15 tolerated_low_confidence(0.54) benign(0.002) TCGA-60-2724-01 4 164271888 164271888 C G NPY5R Missense_Mutation p.H155D 0.31 deleterious(0.02) possibly_damaging(0.524) TCGA-60-2724-01 4 167656242 167656242 C A SPOCK3 Splice_Site p.X381_splice 0.21 TCGA-60-2724-01 4 177032832 177032832 C A WDR17 Missense_Mutation p.T58N 0.24 deleterious(0) probably_damaging(0.997) TCGA-60-2724-01 4 177032833 177032833 C A WDR17 Silent p.T58T 0.24 TCGA-60-2724-01 4 177116559 177116559 G C SPATA4 Missense_Mutation p.S52C 0.23 tolerated(0.1) benign(0.063) TCGA-60-2724-01 4 183245314 183245314 G T TENM3 Missense_Mutation p.L47F 0.29 deleterious_low_confidence(0) possibly_damaging(0.849) TCGA-60-2724-01 4 187628794 187628794 G A FAT1 Nonsense_Mutation p.Q730* 0.28 TCGA-60-2724-01 4 266052 266052 T C ZNF732 Silent p.E198E 0.29 TCGA-60-2724-01 4 42964979 42964979 C T GRXCR1 Missense_Mutation p.T152I 0.12 deleterious(0) probably_damaging(0.999) TCGA-60-2724-01 4 437083 437083 A G ZNF721 Silent p.C391C 0.06 TCGA-60-2724-01 4 44177016 44177016 C A KCTD8 Missense_Mutation p.D405Y 0.25 deleterious(0.01) possibly_damaging(0.75) TCGA-60-2724-01 4 5141686 5141686 A T STK32B Missense_Mutation p.K36M 0.13 deleterious(0) probably_damaging(0.924) TCGA-60-2724-01 4 57173814 57173814 C A KIAA1211 Silent p.P78P 0.21 TCGA-60-2724-01 4 57173815 57173815 A T KIAA1211 Missense_Mutation p.M79L 0.22 tolerated(0.14) possibly_damaging(0.6) TCGA-60-2724-01 4 57194671 57194671 G A KIAA1211 3'UTR 0.32 TCGA-60-2724-01 4 57350915 57350915 G T SRP72 Missense_Mutation p.R324L 0.32 deleterious(0.04) benign(0.246) TCGA-60-2724-01 4 8621052 8621052 C A CPZ Missense_Mutation p.P556H 0.10 deleterious(0) possibly_damaging(0.836) TCGA-60-2724-01 5 101735267 101735267 G T SLCO6A1 Silent p.A602A 0.38 TCGA-60-2724-01 5 140168155 140168155 T C PCDHA1 Silent p.S760S 0.19 TCGA-60-2724-01 5 140237288 140237288 T A PCDHA10 Missense_Mutation p.V552E 0.29 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-60-2724-01 5 140537699 140537699 C A PCDHB17 3'UTR 0.28 TCGA-60-2724-01 5 140537700 140537700 C A PCDHB17 3'UTR 0.28 TCGA-60-2724-01 5 176084550 176084550 T C TSPAN17 Missense_Mutation p.W284R 0.38 deleterious_low_confidence(0) benign(0.012) TCGA-60-2724-01 5 176678730 176678730 G C NSD1 Splice_Site p.X1548_splice 0.27 TCGA-60-2724-01 5 180049733 180049733 G T FLT4 Missense_Mutation p.T552N 0.37 deleterious(0) probably_damaging(0.99) TCGA-60-2724-01 5 21751825 21751825 A G CDH12 3'UTR 0.60 TCGA-60-2724-01 5 23527441 23527441 T C PRDM9 Silent p.Y748Y 0.13 TCGA-60-2724-01 5 38425120 38425120 C T EGFLAM Missense_Mutation p.T579I 0.14 tolerated(0.28) benign(0.084) TCGA-60-2724-01 5 6620367 6620367 G A NSUN2 Silent p.L223L 0.58 TCGA-60-2724-01 5 822005 822005 C A ZDHHC11 Silent p.G343G 0.08 TCGA-60-2724-01 5 87502981 87502981 A T TMEM161B Missense_Mutation p.L155I 0.16 tolerated(0.07) benign(0.062) TCGA-60-2724-01 6 101306949 101306949 T C ASCC3 Intron 0.10 TCGA-60-2724-01 6 105573354 105573354 T A BVES Missense_Mutation p.M151L 0.19 tolerated(0.42) benign(0.016) TCGA-60-2724-01 6 117706942 117706942 G T ROS1 Silent p.I736I 0.26 TCGA-60-2724-01 6 131996260 131996260 C A ENPP3 Missense_Mutation p.T268N 0.23 deleterious(0) possibly_damaging(0.864) TCGA-60-2724-01 6 136923061 136923061 C T MAP3K5 Silent p.K912K 0.12 TCGA-60-2724-01 6 138200446 138200446 G T TNFAIP3 Missense_Mutation p.G622C 0.11 deleterious(0) probably_damaging(1) TCGA-60-2724-01 6 150710499 150710499 T A IYD Missense_Mutation p.W64R 0.25 tolerated(0.24) benign(0.284) TCGA-60-2724-01 6 152605113 152605113 C A SYNE1 Missense_Mutation p.E6069D 0.08 probably_damaging(0.996) TCGA-60-2724-01 6 152655162 152655162 C T SYNE1 Missense_Mutation p.E4259K 0.13 benign(0.37) TCGA-60-2724-01 6 152784642 152784642 C A SYNE1 Missense_Mutation p.R648L 0.30 possibly_damaging(0.661) TCGA-60-2724-01 6 167347621 167347621 C T RNASET2 Silent p.V150V 0.13 TCGA-60-2724-01 6 168351866 168351866 C T MLLT4 Missense_Mutation p.R1271C 0.22 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-60-2724-01 6 25830752 25830752 C G SLC17A1 Missense_Mutation p.V12L 0.16 tolerated(0.16) benign(0.023) TCGA-60-2724-01 6 26199405 26199405 C A HIST1H2AD Nonsense_Mutation p.G23* 0.30 TCGA-60-2724-01 6 32917165 32917165 C A HLA-DMA Missense_Mutation p.A222S 0.21 tolerated(0.33) benign(0.093) TCGA-60-2724-01 6 32917166 32917166 G A HLA-DMA Silent p.N221N 0.21 TCGA-60-2724-01 6 43466779 43466779 G T TJAP1 Missense_Mutation p.A14S 0.09 deleterious(0) probably_damaging(0.998) TCGA-60-2724-01 6 52874359 52874359 C T ICK Missense_Mutation p.S500N 0.23 tolerated(1) benign(0) TCGA-60-2724-01 6 80196890 80196890 C A LCA5 Missense_Mutation p.G642V 0.16 tolerated(0.23) possibly_damaging(0.517) TCGA-60-2724-01 6 80196891 80196891 C A LCA5 Missense_Mutation p.G642W 0.16 tolerated(0.19) probably_damaging(0.95) TCGA-60-2724-01 6 85472389 85472389 G T TBX18 Missense_Mutation p.R124S 0.17 tolerated(0.73) benign(0) TCGA-60-2724-01 6 87925771 87925771 G T ZNF292 Missense_Mutation p.A107S 0.10 tolerated(0.44) possibly_damaging(0.638) TCGA-60-2724-01 7 103293160 103293160 G A RELN Missense_Mutation p.P534L 0.22 tolerated(0.49) probably_damaging(0.998) TCGA-60-2724-01 7 106509105 106509105 G - PIK3CG Frame_Shift_Del p.G367Afs*17 0.10 TCGA-60-2724-01 7 112724772 112724772 G C GPR85 Missense_Mutation p.A2G 0.33 deleterious_low_confidence(0) benign(0) TCGA-60-2724-01 7 113517799 113517799 T C PPP1R3A Silent p.K1116K 0.29 TCGA-60-2724-01 7 117235061 117235062 - A CFTR Frame_Shift_Ins p.S858Efs*38 0.09 TCGA-60-2724-01 7 123593754 123593754 A T SPAM1 Missense_Mutation p.I44F 0.18 tolerated(0.33) benign(0.082) TCGA-60-2724-01 7 131887566 131887566 C A PLXNA4 Nonsense_Mutation p.E809* 0.23 TCGA-60-2724-01 7 14188679 14188679 G T DGKB 3'UTR 0.17 TCGA-60-2724-01 7 142641733 142641733 G T KEL Missense_Mutation p.D470E 0.17 tolerated(0.62) benign(0.144) TCGA-60-2724-01 7 147092850 147092850 G A CNTNAP2 Missense_Mutation p.D550N 0.29 deleterious(0.01) benign(0.26) TCGA-60-2724-01 7 154684229 154684229 A T DPP6 3'UTR 0.09 TCGA-60-2724-01 7 154863283 154863283 A G HTR5A Missense_Mutation p.K225R 0.10 tolerated(0.16) benign(0.077) TCGA-60-2724-01 7 158663842 158663842 T C WDR60 Missense_Mutation p.S27P 0.06 tolerated(0.43) possibly_damaging(0.784) TCGA-60-2724-01 7 21654792 21654792 C G DNAH11 Missense_Mutation p.L1305V 0.35 benign(0.307) TCGA-60-2724-01 7 21778398 21778398 C A DNAH11 Silent p.I2582I 0.28 TCGA-60-2724-01 7 27213855 27213855 G T HOXA10 Missense_Mutation p.P24H 0.23 deleterious(0.02) benign(0.116) TCGA-60-2724-01 7 35242129 35242129 C T TBX20 Silent p.P419P 0.25 TCGA-60-2724-01 7 38389542 38389542 A G TRGV5 5'UTR 0.25 TCGA-60-2724-01 7 39612441 39612441 G C YAE1D1 3'UTR 0.30 TCGA-60-2724-01 7 48318270 48318270 A G ABCA13 Silent p.K2493K 0.24 TCGA-60-2724-01 7 5331371 5331371 G T SLC29A4 Missense_Mutation p.V155L 0.19 deleterious(0.01) benign(0.053) TCGA-60-2724-01 7 55914210 55914210 C G SEPT14 Missense_Mutation p.G59R 0.19 deleterious(0.02) probably_damaging(1) TCGA-60-2724-01 7 57529022 57529022 C A ZNF716 Missense_Mutation p.N285K 0.25 tolerated(1) benign(0.009) TCGA-60-2724-01 7 6022587 6022587 T A PMS2 Missense_Mutation p.Q681L 0.12 deleterious(0) probably_damaging(0.991) TCGA-60-2724-01 7 73462840 73462840 C A ELN Silent p.G251G 0.13 TCGA-60-2724-01 7 75613147 75613147 G T POR Missense_Mutation p.V347F 0.27 deleterious(0.02) benign(0.179) TCGA-60-2724-01 7 8126323 8126323 A T GLCCI1 3'UTR 0.17 TCGA-60-2724-01 7 86394673 86394673 C T GRM3 Missense_Mutation p.A71V 0.28 deleterious(0) probably_damaging(1) TCGA-60-2724-01 7 86479772 86479772 C T GRM3 Silent p.I826I 0.25 TCGA-60-2724-01 7 86479773 86479773 C G GRM3 Missense_Mutation p.L827V 0.25 tolerated(0.33) benign(0.1) TCGA-60-2724-01 7 88423476 88423476 C A C7orf62 3'UTR 0.36 TCGA-60-2724-01 7 92028042 92028042 G C ANKIB1 Missense_Mutation p.V1017L 0.18 tolerated_low_confidence(0.58) benign(0) TCGA-60-2724-01 7 94293392 94293392 G C PEG10 Missense_Mutation p.R175P 0.11 deleterious(0) probably_damaging(0.997) TCGA-60-2724-01 8 103231116 103231116 C A RRM2B Missense_Mutation p.A204S 0.13 tolerated_low_confidence(1) benign(0.262) TCGA-60-2724-01 8 11400774 11400774 C T BLK Missense_Mutation p.P14L 0.27 tolerated_low_confidence(0.11) benign(0.007) TCGA-60-2724-01 8 120569785 120569785 C T ENPP2 Silent p.L908L 0.14 TCGA-60-2724-01 8 120844884 120844884 C A TAF2 5'UTR 0.08 TCGA-60-2724-01 8 125035683 125035683 G C FER1L6 Splice_Site p.X712_splice 0.18 TCGA-60-2724-01 8 125989627 125989627 G T ZNF572 Nonsense_Mutation p.E373* 0.07 TCGA-60-2724-01 8 133051285 133051285 G T OC90 Silent p.S181S 0.20 TCGA-60-2724-01 8 143994781 143994781 G T CYP11B2 Silent p.A347A 0.12 TCGA-60-2724-01 8 144877216 144877216 C T SCRIB Missense_Mutation p.V1280M 0.23 benign(0.012) TCGA-60-2724-01 8 144993255 144993255 G T PLEC Silent p.G3715G 0.33 TCGA-60-2724-01 8 146015194 146015194 T C RPL8 Missense_Mutation p.N257D 0.14 tolerated_low_confidence(0.34) benign(0.001) TCGA-60-2724-01 8 48878887 48878887 C G MCM4 Missense_Mutation p.P325A 0.26 deleterious(0) probably_damaging(1) TCGA-60-2724-01 8 53071463 53071463 C T ST18 Missense_Mutation p.A601T 0.24 tolerated(0.47) possibly_damaging(0.734) TCGA-60-2724-01 8 54684613 54684613 C A ATP6V1H Nonsense_Mutation p.E329* 0.33 TCGA-60-2724-01 8 61750802 61750802 C T CHD7 Silent p.S1507S 0.23 TCGA-60-2724-01 8 63976766 63976766 C A TTPA Missense_Mutation p.R221L 0.19 deleterious(0) probably_damaging(0.962) TCGA-60-2724-01 8 72967808 72967808 C A TRPA1 Missense_Mutation p.R464S 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-60-2724-01 8 73480336 73480336 C A KCNB2 Missense_Mutation p.L123I 0.32 tolerated(0.11) probably_damaging(1) TCGA-60-2724-01 8 73958325 73958325 A G TERF1 Missense_Mutation p.R425G 0.16 deleterious(0) probably_damaging(1) TCGA-60-2724-01 8 77767923 77767923 A G ZFHX4 Silent p.K2922K 0.18 TCGA-60-2724-01 8 82359589 82359589 A T PMP2 Silent p.L11L 0.14 TCGA-60-2724-01 8 85441619 85441619 C A RALYL Silent p.S34S 0.17 TCGA-60-2724-01 8 87738864 87738864 G A CNGB3 Missense_Mutation p.S78F 0.29 deleterious(0.03) possibly_damaging(0.564) TCGA-60-2724-01 8 92352656 92352656 G C SLC26A7 Silent p.P301P 0.11 TCGA-60-2724-01 9 112900186 112900186 G T PALM2-AKAP2 Missense_Mutation p.G788W 0.24 deleterious(0.02) probably_damaging(1) TCGA-60-2724-01 9 113065898 113065898 G A TXNDC8 3'UTR 0.25 TCGA-60-2724-01 9 126128327 126128327 G T CRB2 Missense_Mutation p.D184Y 0.29 deleterious(0) unknown(0) TCGA-60-2724-01 9 78973889 78973889 A G PCSK5 3'UTR 0.29 TCGA-60-2724-01 9 84531679 84531679 C A SPATA31D5P RNA 0.35 TCGA-60-2724-01 9 93650155 93650155 G T SYK Missense_Mutation p.G569V 0.32 deleterious(0) probably_damaging(1) TCGA-60-2724-01 X 118893621 118893621 G T SOWAHD 3'UTR 0.80 TCGA-60-2724-01 X 119059024 119059024 C G NKAP 3'UTR 0.45 TCGA-60-2724-01 X 119059039 119059039 T C NKAP 3'UTR 0.57 TCGA-60-2724-01 X 151869721 151869721 G T MAGEA6 Silent p.G137G 0.15 TCGA-60-2724-01 X 153592424 153592425 - A FLNA Frame_Shift_Ins p.W749Lfs*73 0.40 TCGA-60-2724-01 X 2609967 2609967 A G CD99 Intron 0.40 TCGA-60-2724-01 X 26212770 26212770 C T MAGEB6 Silent p.G269G 0.46 TCGA-60-2724-01 X 44937643 44937643 A G KDM6A Splice_Site p.X945_splice 0.52 TCGA-60-2724-01 X 53230856 53230856 T A KDM5C Missense_Mutation p.E646V 0.49 deleterious(0) probably_damaging(0.98) TCGA-60-2724-01 X 73063516 73063516 G T XIST RNA 0.44 TCGA-60-2724-01 X 79286183 79286183 A G TBX22 Missense_Mutation p.N379S 0.40 tolerated(0.75) benign(0.005) TCGA-60-2724-01 Y 9305917 9305917 A G TSPY1 Silent p.E191E 0.10 TCGA-60-2725-01 10 120795713 120795713 T A EIF3A Silent p.R1329R 0.19 TCGA-60-2725-01 10 14974877 14974877 C G DCLRE1C Missense_Mutation p.Q252H 0.19 deleterious(0) probably_damaging(0.996) TCGA-60-2725-01 10 37425591 37425591 C A ANKRD30A Missense_Mutation p.T215N 0.38 deleterious(0.01) benign(0.032) TCGA-60-2725-01 10 37440998 37440998 C G ANKRD30A Missense_Mutation p.F496L 0.14 tolerated(0.82) possibly_damaging(0.483) TCGA-60-2725-01 10 55582709 55582709 C G PCDH15 Missense_Mutation p.E1595Q 0.17 tolerated_low_confidence(0.21) benign(0.322) TCGA-60-2725-01 10 82033458 82033458 C G MAT1A 3'UTR 0.10 TCGA-60-2725-01 10 99661269 99661269 C A CRTAC1 Missense_Mutation p.R375L 0.20 tolerated(0.12) benign(0.018) TCGA-60-2725-01 11 125618609 125618609 T A PATE1 Missense_Mutation p.L121Q 0.22 deleterious(0) probably_damaging(0.912) TCGA-60-2725-01 11 129062053 129062054 CT - ARHGAP32 Frame_Shift_Del p.S14Cfs*7 0.26 TCGA-60-2725-01 11 17517143 17517143 G T USH1C Missense_Mutation p.H876Q 0.12 tolerated_low_confidence(1) benign(0.04) TCGA-60-2725-01 11 30033616 30033616 C G KCNA4 Missense_Mutation p.D204H 0.12 deleterious(0.04) probably_damaging(0.999) TCGA-60-2725-01 11 55587239 55587239 G T OR5D18 Missense_Mutation p.G45V 0.19 deleterious(0) possibly_damaging(0.782) TCGA-60-2725-01 11 5566079 5566079 G C OR52H1 Silent p.S225S 0.17 TCGA-60-2725-01 11 55703110 55703110 G C OR5I1 Missense_Mutation p.T256S 0.20 tolerated(0.14) benign(0.01) TCGA-60-2725-01 11 5969275 5969275 G A OR56A3 Silent p.K233K 0.10 TCGA-60-2725-01 11 61405045 61405045 G A RPLP0P2 RNA 0.11 TCGA-60-2725-01 11 65835483 65835483 G T SF3B2 Missense_Mutation p.M799I 0.16 tolerated(0.11) benign(0.323) TCGA-60-2725-01 11 69062870 69062870 C G MYEOV Missense_Mutation p.L17V 0.64 tolerated_low_confidence(0.24) possibly_damaging(0.801) TCGA-60-2725-01 11 6977835 6977835 A C ZNF215 3'UTR 0.10 TCGA-60-2725-01 11 70017087 70017087 C T ANO1 Silent p.D764D 0.75 TCGA-60-2725-01 12 23696294 23696294 C G SOX5 Missense_Mutation p.R541T 0.03 deleterious(0) probably_damaging(0.985) TCGA-60-2725-01 12 2774140 2774140 T A CACNA1C Missense_Mutation p.M1509K 0.07 deleterious(0) possibly_damaging(0.801) TCGA-60-2725-01 12 31540393 31540393 C A DENND5B 3'UTR 0.38 TCGA-60-2725-01 12 50236666 50236666 G C BCDIN3D Missense_Mutation p.L69V 0.05 tolerated(0.33) benign(0) TCGA-60-2725-01 12 58114586 58114586 C T OS9 Missense_Mutation p.A633V 0.20 tolerated(0.59) benign(0.338) TCGA-60-2725-01 12 7074847 7074847 C T PHB2 3'UTR 0.16 TCGA-60-2725-01 12 8610514 8610514 C A CLEC6A Missense_Mutation p.L18M 0.16 tolerated(0.09) benign(0.03) TCGA-60-2725-01 12 88586608 88586608 G T TMTC3 Splice_Site p.X645_splice 0.14 TCGA-60-2725-01 12 8926333 8926333 A C RIMKLB Missense_Mutation p.N372H 0.20 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-60-2725-01 13 103513987 103513987 A G BIVM-ERCC5 Missense_Mutation p.D694G 0.21 tolerated(0.1) benign(0.11) TCGA-60-2725-01 13 42245198 42245198 C T VWA8 Missense_Mutation p.V1499I 0.18 tolerated(0.36) benign(0.001) TCGA-60-2725-01 14 100795213 100795213 C T SLC25A47 Missense_Mutation p.R160C 0.12 deleterious(0) benign(0.022) TCGA-60-2725-01 14 103369708 103369708 C - TRAF3 Frame_Shift_Del p.R360Afs*2 0.22 TCGA-60-2725-01 14 106845549 106845549 G T IGHV3-35 Missense_Mutation p.A42E 0.06 deleterious_low_confidence(0.03) benign(0.246) TCGA-60-2725-01 14 36133969 36133969 G A RALGAPA1 Missense_Mutation p.P1230L 0.09 deleterious(0) probably_damaging(0.999) TCGA-60-2725-01 14 47389251 47389251 C T MDGA2 Silent p.V734V 0.13 TCGA-60-2725-01 14 69521877 69521877 C A DCAF5 Missense_Mutation p.R509L 0.26 deleterious_low_confidence(0) benign(0.103) TCGA-60-2725-01 14 94467537 94467537 G C LINC00521 RNA 0.23 TCGA-60-2725-01 15 25429530 25429530 G A SNORD115-8 RNA 0.18 TCGA-60-2725-01 15 49255141 49255141 C A SHC4 Missense_Mutation p.M24I 0.15 deleterious(0.04) probably_damaging(0.985) TCGA-60-2725-01 15 77907356 77907356 G A LINGO1 Missense_Mutation p.P298L 0.11 deleterious(0.01) probably_damaging(0.994) TCGA-60-2725-01 15 78526837 78526837 G T ACSBG1 Missense_Mutation p.R3S 0.16 deleterious_low_confidence(0.01) benign(0.067) TCGA-60-2725-01 16 19873221 19873221 C A GPRC5B Missense_Mutation p.A369S 0.26 tolerated(0.86) possibly_damaging(0.655) TCGA-60-2725-01 16 2138231 2138231 G C TSC2 Missense_Mutation p.A1722P 0.07 deleterious(0.02) probably_damaging(1) TCGA-60-2725-01 16 48158195 48158195 C A ABCC12 Missense_Mutation p.G506W 0.21 deleterious(0) probably_damaging(1) TCGA-60-2725-01 16 50825602 50825602 G T CYLD Splice_Site p.X747_splice 0.17 TCGA-60-2725-01 16 51175941 51175941 G A SALL1 Silent p.N64N 0.19 TCGA-60-2725-01 17 3181486 3181486 G T OR3A2 Silent p.S248S 0.18 TCGA-60-2725-01 17 34493495 34493495 G T TBC1D3B Missense_Mutation p.S510R 0.05 deleterious(0) possibly_damaging(0.758) TCGA-60-2725-01 17 37790145 37790145 G A PPP1R1B Missense_Mutation p.R84H 0.04 tolerated(0.09) probably_damaging(1) TCGA-60-2725-01 17 40832121 40832121 C G CCR10 Missense_Mutation p.S180T 0.14 tolerated(0.15) possibly_damaging(0.801) TCGA-60-2725-01 17 47904775 47904775 G A KAT7 Missense_Mutation p.E583K 0.11 deleterious(0.04) benign(0.056) TCGA-60-2725-01 17 73494306 73494306 C A KIAA0195 Silent p.I1180I 0.05 TCGA-60-2725-01 17 7578547 7578547 G - TP53 Frame_Shift_Del p.P128Lfs*42 0.23 TCGA-60-2725-01 18 25532173 25532173 C T CDH2 Missense_Mutation p.D889N 0.15 deleterious(0.03) probably_damaging(0.99) TCGA-60-2725-01 18 40500726 40500726 C A RIT2 Intron 0.15 TCGA-60-2725-01 18 42532153 42532153 G A SETBP1 Missense_Mutation p.D950N 0.19 tolerated(0.09) benign(0.025) TCGA-60-2725-01 18 43437927 43437927 G C EPG5 Missense_Mutation p.R2445G 0.17 deleterious(0.03) benign(0.063) TCGA-60-2725-01 18 5397278 5397278 C T EPB41L3 Missense_Mutation p.A874T 0.17 tolerated(0.08) possibly_damaging(0.493) TCGA-60-2725-01 18 54398770 54398770 C G WDR7 Missense_Mutation p.A644G 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-60-2725-01 18 56191230 56191230 A T ALPK2 Missense_Mutation p.Y1856N 0.14 deleterious(0) probably_damaging(1) TCGA-60-2725-01 19 10671094 10671094 C G KRI1 Missense_Mutation p.E238Q 0.03 tolerated(0.24) benign(0.04) TCGA-60-2725-01 19 13006857 13006857 G C GCDH Missense_Mutation p.S186T 0.08 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-60-2725-01 19 14273704 14273704 C G LPHN1 Silent p.T308T 0.11 TCGA-60-2725-01 19 15529823 15529823 C A AKAP8L 5'UTR 0.21 TCGA-60-2725-01 19 21910571 21910571 T A ZNF100 Silent p.P181P 0.17 TCGA-60-2725-01 19 36549714 36549714 C A WDR62 Silent p.A70A 0.05 TCGA-60-2725-01 19 371313 371313 A T THEG Silent p.P215P 0.16 TCGA-60-2725-01 19 51628484 51628484 G C SIGLEC9 Missense_Mutation p.E85Q 0.11 tolerated(0.07) possibly_damaging(0.504) TCGA-60-2725-01 19 51671063 51671063 G C CTD-3187F8.14 Intron 0.17 TCGA-60-2725-01 19 52148782 52148782 A G SIGLEC14 Silent p.Y234Y 0.06 TCGA-60-2725-01 19 8842130 8842130 T C OR2Z1 Missense_Mutation p.V247A 0.16 tolerated(0.08) benign(0.059) TCGA-60-2725-01 19 9046738 9046738 C A MUC16 Silent p.V11631V 0.13 TCGA-60-2725-01 1 113460645 113460645 A C SLC16A1 Missense_Mutation p.L128W 0.22 deleterious(0) probably_damaging(0.992) TCGA-60-2725-01 1 114253056 114253056 G T PHTF1 Missense_Mutation p.N363K 0.10 deleterious(0.05) benign(0.021) TCGA-60-2725-01 1 146739123 146739123 C T CHD1L Nonsense_Mutation p.Q312* 0.18 TCGA-60-2725-01 1 154523919 154523919 G C UBE2Q1 Missense_Mutation p.A375G 0.16 deleterious(0) probably_damaging(0.949) TCGA-60-2725-01 1 154523920 154523920 C A UBE2Q1 Missense_Mutation p.A375S 0.17 deleterious(0) possibly_damaging(0.844) TCGA-60-2725-01 1 157805765 157805765 T C CD5L Missense_Mutation p.Y79C 0.14 deleterious(0) probably_damaging(0.992) TCGA-60-2725-01 1 160593937 160593937 C T SLAMF1 Missense_Mutation p.G247S 0.15 tolerated(0.09) benign(0.025) TCGA-60-2725-01 1 16736256 16736256 G A SPATA21 Missense_Mutation p.R143W 0.15 tolerated(0.14) benign(0.004) TCGA-60-2725-01 1 169801603 169801603 A G C1orf112 Missense_Mutation p.I499V 0.05 tolerated(1) benign(0.003) TCGA-60-2725-01 1 179077770 179077770 C A ABL2 Missense_Mutation p.G878W 0.18 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-60-2725-01 1 19593952 19593952 C T AKR7L Missense_Mutation p.A102T 0.15 benign(0.108) TCGA-60-2725-01 1 205117394 205117394 C A DSTYK Missense_Mutation p.K847N 0.13 deleterious(0.01) probably_damaging(0.937) TCGA-60-2725-01 1 209956791 209956791 T C C1orf74 Silent p.A63A 0.22 TCGA-60-2725-01 1 215972468 215972468 C A USH2A Splice_Site p.X3247_splice 0.16 TCGA-60-2725-01 1 229600521 229600521 C A NUP133 Missense_Mutation p.V801L 0.15 tolerated(1) benign(0.002) TCGA-60-2725-01 1 247921246 247921246 G T OR1C1 Missense_Mutation p.H155N 0.08 tolerated(0.84) probably_damaging(0.989) TCGA-60-2725-01 1 29095445 29095445 G C YTHDF2 Missense_Mutation p.R574P 0.16 deleterious_low_confidence(0.01) benign(0.002) TCGA-60-2725-01 1 44437508 44437508 A C DPH2 Missense_Mutation p.K312Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-60-2725-01 1 98058805 98058805 C A DPYD Missense_Mutation p.G366V 0.15 deleterious(0) probably_damaging(0.999) TCGA-60-2725-01 1 98058806 98058806 C T DPYD Missense_Mutation p.G366S 0.14 tolerated(0.06) possibly_damaging(0.89) TCGA-60-2725-01 20 20246181 20246181 G A C20orf26 Intron 0.11 TCGA-60-2725-01 20 2290395 2290395 A G TGM3 Missense_Mutation p.R34G 0.15 deleterious(0) probably_damaging(1) TCGA-60-2725-01 20 45192146 45192146 G C SLC13A3 Silent p.G513G 0.07 TCGA-60-2725-01 20 56190586 56190586 G C ZBP1 Missense_Mutation p.Q104E 0.18 tolerated(0.21) possibly_damaging(0.585) TCGA-60-2725-01 20 61386218 61386218 G A NTSR1 Missense_Mutation p.R299Q 0.19 tolerated(0.85) benign(0.028) TCGA-60-2725-01 21 11097586 11097586 C G BAGE2 RNA 0.05 TCGA-60-2725-01 21 45821654 45821654 C A TRPM2 Silent p.L804L 0.07 TCGA-60-2725-01 22 17690370 17690370 G C CECR1 Silent p.L66L 0.14 TCGA-60-2725-01 22 39908337 39908337 T G MIEF1 Silent p.T141T 0.36 TCGA-60-2725-01 22 41222545 41222545 C A ST13 Silent p.A369A 0.25 TCGA-60-2725-01 22 45258351 45258351 C T PRR5-ARHGAP8 Missense_Mutation p.A603V 0.05 tolerated_low_confidence(0.06) benign(0.001) TCGA-60-2725-01 2 102968090 102968090 C T IL1RL1 Silent p.Y460Y 0.09 TCGA-60-2725-01 2 119752052 119752052 G T MARCO Missense_Mutation p.D507Y 0.15 deleterious(0) unknown(0) TCGA-60-2725-01 2 136548329 136548329 A T LCT Missense_Mutation p.I1745N 0.12 deleterious(0) probably_damaging(0.981) TCGA-60-2725-01 2 166616044 166616044 G A GALNT3 Missense_Mutation p.A292V 0.07 deleterious(0.04) possibly_damaging(0.513) TCGA-60-2725-01 2 166626805 166626805 C G GALNT3 Missense_Mutation p.E136Q 0.14 tolerated(0.12) benign(0.166) TCGA-60-2725-01 2 190331263 190331263 G A WDR75 Missense_Mutation p.G468S 0.11 deleterious(0.05) probably_damaging(0.964) TCGA-60-2725-01 2 191934419 191934419 C T STAT4 Missense_Mutation p.D182N 0.09 tolerated(0.12) benign(0.395) TCGA-60-2725-01 2 197541455 197541455 G C CCDC150 Missense_Mutation p.E480D 0.09 deleterious(0.01) benign(0.36) TCGA-60-2725-01 2 202430541 202430541 C G ALS2CR11 Silent p.L296L 0.13 TCGA-60-2725-01 2 209190987 209190987 T A PIKFYVE Missense_Mutation p.M1151K 0.09 deleterious(0) possibly_damaging(0.824) TCGA-60-2725-01 2 216298158 216298158 T A FN1 Missense_Mutation p.T102S 0.13 deleterious(0.03) probably_damaging(0.998) TCGA-60-2725-01 2 223084939 223084939 T A PAX3 Missense_Mutation p.S365C 0.12 deleterious_low_confidence(0) possibly_damaging(0.849) TCGA-60-2725-01 2 228892257 228892257 G T SPHKAP Silent p.V83V 0.15 TCGA-60-2725-01 2 26689649 26689649 T C OTOF Missense_Mutation p.Y1478C 0.11 tolerated(0.09) benign(0.004) TCGA-60-2725-01 2 27356432 27356432 T C PREB Missense_Mutation p.H98R 0.14 tolerated(0.54) benign(0) TCGA-60-2725-01 2 29287800 29287800 G T C2orf71 Silent p.R1268R 0.20 TCGA-60-2725-01 2 37586830 37586830 C T QPCT Silent p.S125S 0.19 TCGA-60-2725-01 2 44078862 44078862 C A ABCG8 Missense_Mutation p.H154Q 0.12 tolerated(0.06) benign(0.034) TCGA-60-2725-01 2 74041313 74041313 C A C2orf78 Nonsense_Mutation p.Y269* 0.12 TCGA-60-2725-01 2 79312326 79312326 C A REG1B 3'UTR 0.09 TCGA-60-2725-01 2 85097839 85097839 T C TRABD2A Missense_Mutation p.H60R 0.15 tolerated(0.06) benign(0.258) TCGA-60-2725-01 3 107925521 107925521 T A IFT57 Missense_Mutation p.E203V 0.12 tolerated(0.09) probably_damaging(0.93) TCGA-60-2725-01 3 115395053 115395053 C A GAP43 Missense_Mutation p.A111D 0.13 deleterious(0) possibly_damaging(0.834) TCGA-60-2725-01 3 115395054 115395054 C G GAP43 Silent p.A111A 0.14 TCGA-60-2725-01 3 119306408 119306408 G T ADPRH Nonsense_Mutation p.E253* 0.04 TCGA-60-2725-01 3 121825253 121825253 G A CD86 Silent p.L203L 0.16 TCGA-60-2725-01 3 122436926 122436926 A G PARP14 Missense_Mutation p.K1337E 0.08 tolerated(0.16) benign(0.309) TCGA-60-2725-01 3 136002707 136002707 C G PCCB Missense_Mutation p.P211R 0.14 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-60-2725-01 3 149677870 149677870 G A RNF13 Missense_Mutation p.C243Y 0.04 deleterious(0) probably_damaging(1) TCGA-60-2725-01 3 150876521 150876521 G A MED12L Missense_Mutation p.V258I 0.04 tolerated(0.2) probably_damaging(0.98) TCGA-60-2725-01 3 164907600 164907600 C A SLITRK3 Missense_Mutation p.R340L 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-60-2725-01 3 183963051 183963051 C T ALG3 Silent p.V180V 0.28 TCGA-60-2725-01 3 49698245 49698245 T C BSN Silent p.S2989S 0.26 TCGA-60-2725-01 3 93593054 93593054 C A PROS1 3'UTR 0.12 TCGA-60-2725-01 3 9424981 9424981 C T THUMPD3 Missense_Mutation p.P408L 0.23 deleterious(0) probably_damaging(0.994) TCGA-60-2725-01 4 110415820 110415820 A G SEC24B Silent p.E432E 0.21 TCGA-60-2725-01 4 113350351 113350351 C G ALPK1 Missense_Mutation p.A281G 0.18 deleterious(0.02) probably_damaging(0.933) TCGA-60-2725-01 4 120981308 120981308 T C MAD2L1 Missense_Mutation p.S195G 0.04 tolerated(0.06) benign(0.011) TCGA-60-2725-01 4 124177257 124177257 G A SPATA5 Silent p.Q809Q 0.20 TCGA-60-2725-01 4 151770705 151770705 C A LRBA Missense_Mutation p.D1343Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-60-2725-01 4 155256175 155256175 C A DCHS2 Missense_Mutation p.G354V 0.07 deleterious(0) probably_damaging(0.998) TCGA-60-2725-01 4 178360790 178360790 T C AGA Missense_Mutation p.I112V 0.13 tolerated(0.07) benign(0.261) TCGA-60-2725-01 4 3251171 3251171 G T MSANTD1 Silent p.V74V 0.20 TCGA-60-2725-01 4 57180943 57180943 C A KIAA1211 Missense_Mutation p.D425E 0.28 tolerated(0.17) unknown(0) TCGA-60-2725-01 4 5868448 5868448 G T CRMP1 Silent p.I139I 0.05 TCGA-60-2725-01 4 88005269 88005269 C A AFF1 Intron 0.09 TCGA-60-2725-01 5 10239279 10239279 G A FAM173B Missense_Mutation p.P69L 0.28 deleterious(0) probably_damaging(1) TCGA-60-2725-01 5 10402650 10402650 T C MARCH6 Silent p.S376S 0.03 TCGA-60-2725-01 5 120021807 120021807 C A PRR16 Silent p.P83P 0.18 TCGA-60-2725-01 5 134724756 134724756 A G H2AFY Missense_Mutation p.S10P 0.13 tolerated(0.11) unknown(0) TCGA-60-2725-01 5 138856952 138856952 G - TMEM173 Frame_Shift_Del p.P303Lfs*44 0.14 TCGA-60-2725-01 5 140433228 140433228 A G PCDHB1 Missense_Mutation p.T725A 0.20 tolerated(0.21) benign(0.119) TCGA-60-2725-01 5 140537739 140537739 G T PCDHB17 3'UTR 0.28 TCGA-60-2725-01 5 150715081 150715081 T A SLC36A2 Missense_Mutation p.N185Y 0.19 tolerated(0.15) benign(0.088) TCGA-60-2725-01 6 100369022 100369022 C A MCHR2 Missense_Mutation p.V273L 0.20 tolerated(0.1) benign(0.009) TCGA-60-2725-01 6 105177550 105177550 T C HACE1 Missense_Mutation p.Y906C 0.13 deleterious(0) probably_damaging(0.996) TCGA-60-2725-01 6 116892645 116892645 G A RWDD1 5'UTR 0.26 TCGA-60-2725-01 6 130475977 130475977 G A SAMD3 Missense_Mutation p.P339L 0.14 deleterious(0.01) possibly_damaging(0.642) TCGA-60-2725-01 6 130761550 130761550 A G TMEM200A Splice_Site 0.16 TCGA-60-2725-01 6 133077133 133077133 G T VNN2 Missense_Mutation p.A129D 0.27 deleterious(0) probably_damaging(0.998) TCGA-60-2725-01 6 152841636 152841636 C A SYNE1 Silent p.V89V 0.16 TCGA-60-2725-01 6 24569156 24569156 C A KIAA0319 Missense_Mutation p.G665C 0.22 deleterious(0) probably_damaging(0.999) TCGA-60-2725-01 7 117417585 117417585 C A CTTNBP2 Missense_Mutation p.A920S 0.14 deleterious(0) probably_damaging(0.999) TCGA-60-2725-01 7 119914542 119914542 G T KCND2 5'UTR 0.18 TCGA-60-2725-01 7 139661861 139661861 T G TBXAS1 Silent p.P368P 0.18 TCGA-60-2725-01 7 144098541 144098541 C T NOBOX Missense_Mutation p.G148R 0.11 deleterious(0) possibly_damaging(0.646) TCGA-60-2725-01 7 147183133 147183133 T A CNTNAP2 Missense_Mutation p.S593T 0.12 deleterious(0) possibly_damaging(0.566) TCGA-60-2725-01 7 148512021 148512021 G C EZH2 Missense_Mutation p.Q553E 0.07 deleterious(0.04) benign(0.003) TCGA-60-2725-01 7 151704912 151704912 G C GALNTL5 Silent p.R303R 0.12 TCGA-60-2725-01 7 39379342 39379342 C T POU6F2 Missense_Mutation p.P205S 0.31 tolerated_low_confidence(0.05) unknown(0) TCGA-60-2725-01 7 64167834 64167834 T G ZNF107 Nonsense_Mutation p.Y384* 0.13 TCGA-60-2725-01 7 720268 720268 C A PRKAR1B Silent p.V91V 0.19 TCGA-60-2725-01 7 75167418 75167418 C A HIP1 3'UTR 0.09 TCGA-60-2725-01 8 2024249 2024250 CG - MYOM2 Frame_Shift_Del p.G384Cfs*27 0.43 TCGA-60-2725-01 8 25250371 25250371 G A DOCK5 Silent p.K1500K 0.10 TCGA-60-2725-01 8 49832867 49832867 A G SNAI2 Silent p.N71N 0.17 TCGA-60-2725-01 8 77767540 77767540 C A ZFHX4 Missense_Mutation p.Q2795K 0.19 possibly_damaging(0.64) TCGA-60-2725-01 9 125487119 125487119 C A OR1L4 Missense_Mutation p.P284H 0.17 deleterious(0) probably_damaging(1) TCGA-60-2725-01 9 125487120 125487120 C A OR1L4 Silent p.P284P 0.17 TCGA-60-2725-01 9 126144596 126144596 T G DENND1A Silent p.P715P 0.11 TCGA-60-2725-01 9 138586250 138586250 C G SOHLH1 Missense_Mutation p.G310A 0.20 tolerated(0.44) probably_damaging(0.959) TCGA-60-2725-01 9 21970901 21970901 C T CDKN2A Missense_Mutation p.E153K 0.19 tolerated_low_confidence(0.09) benign(0.019) TCGA-60-2725-01 9 32488093 32488093 G T DDX58 Missense_Mutation p.N354K 0.23 deleterious(0.04) benign(0.352) TCGA-60-2725-01 9 8460515 8460515 C G PTPRD Silent p.P1257P 0.12 TCGA-60-2725-01 X 11204358 11204358 T C ARHGAP6 Missense_Mutation p.H424R 0.42 deleterious(0) possibly_damaging(0.756) TCGA-60-2725-01 X 119564976 119564976 C A LAMP2 Intron 0.31 TCGA-60-2725-01 X 138643921 138643921 C A F9 Silent p.V359V 0.38 TCGA-60-2725-01 X 73959296 73959296 A T KIAA2022 Missense_Mutation p.F1499I 0.40 deleterious_low_confidence(0.01) benign(0.132) TCGA-60-2725-01 X 75004435 75004435 G T MAGEE2 Missense_Mutation p.A151D 0.20 tolerated(0.4) benign(0.31) TCGA-60-2725-01 X 79278709 79278709 G C TBX22 Missense_Mutation p.G109A 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-60-2726-01 10 100249878 100249878 G C HPSE2 Missense_Mutation p.R466G 0.16 tolerated(0.07) probably_damaging(0.994) TCGA-60-2726-01 10 104129061 104129061 A T GBF1 Missense_Mutation p.I1022F 0.18 deleterious(0.01) probably_damaging(0.947) TCGA-60-2726-01 10 104353466 104353466 G A SUFU Missense_Mutation p.R224Q 0.08 tolerated(0.16) benign(0.264) TCGA-60-2726-01 10 115392842 115392842 C A NRAP Splice_Site p.X544_splice 0.38 TCGA-60-2726-01 10 118423642 118423642 T - C10orf82 3'UTR 0.13 TCGA-60-2726-01 10 118434439 118434439 A T HSPA12A Missense_Mutation p.D627E 0.22 tolerated(0.49) benign(0.019) TCGA-60-2726-01 10 118895983 118895983 C T VAX1 Silent p.Q143Q 0.10 TCGA-60-2726-01 10 123845054 123845054 G A TACC2 Silent p.R1013R 0.20 TCGA-60-2726-01 10 124708171 124708171 C A C10orf88 Missense_Mutation p.Q214H 0.29 deleterious(0) probably_damaging(0.998) TCGA-60-2726-01 10 13240736 13240736 G T MCM10 Missense_Mutation p.A724S 0.20 tolerated(0.29) benign(0.035) TCGA-60-2726-01 10 134912152 134912152 G T GPR123 Missense_Mutation p.R47L 0.40 deleterious(0) probably_damaging(0.991) TCGA-60-2726-01 10 28233361 28233361 C A ARMC4 Splice_Site p.X512_splice 0.23 TCGA-60-2726-01 10 31791338 31791338 G C ZEB1 Missense_Mutation p.E129Q 0.32 deleterious(0) probably_damaging(0.953) TCGA-60-2726-01 10 33200848 33200848 G A ITGB1 Silent p.F558F 0.17 TCGA-60-2726-01 10 37451602 37451602 C A ANKRD30A Missense_Mutation p.F586L 0.14 tolerated(1) possibly_damaging(0.483) TCGA-60-2726-01 10 38241620 38241620 T A ZNF25 Missense_Mutation p.Q269L 0.20 tolerated(0.15) possibly_damaging(0.8) TCGA-60-2726-01 10 53458538 53458538 T C CSTF2T Missense_Mutation p.I258V 0.12 tolerated(0.66) possibly_damaging(0.558) TCGA-60-2726-01 10 54074314 54074314 C A DKK1 Missense_Mutation p.N40K 0.16 deleterious(0) probably_damaging(0.999) TCGA-60-2726-01 10 60148479 60148479 T G TFAM Missense_Mutation p.I114R 0.16 deleterious(0.05) benign(0.059) TCGA-60-2726-01 10 70406034 70406034 A G TET1 Missense_Mutation p.Y1183C 0.21 deleterious(0) probably_damaging(0.997) TCGA-60-2726-01 10 7618475 7618475 G T ITIH5 Nonsense_Mutation p.S640* 0.27 TCGA-60-2726-01 10 93580 93580 C T TUBB8 Missense_Mutation p.R251Q 0.56 deleterious_low_confidence(0.01) benign(0.402) TCGA-60-2726-01 10 99995216 99995216 G C R3HCC1L Silent p.V689V 0.20 TCGA-60-2726-01 11 103907666 103907666 G A DDI1 Missense_Mutation p.R39K 0.26 deleterious(0.02) benign(0.071) TCGA-60-2726-01 11 113295448 113295448 T C DRD2 Intron 0.18 TCGA-60-2726-01 11 113816817 113816817 C A HTR3B Silent p.T428T 0.48 TCGA-60-2726-01 11 118372451 118372451 T A KMT2A Silent p.P2128P 0.22 TCGA-60-2726-01 11 119059796 119059796 G A PDZD3 Missense_Mutation p.G457E 0.46 tolerated(0.35) benign(0.068) TCGA-60-2726-01 11 123777855 123777855 C T OR8D4 Silent p.S239S 0.20 TCGA-60-2726-01 11 123886921 123886921 G T OR10G4 Missense_Mutation p.V214L 0.24 tolerated(1) benign(0.02) TCGA-60-2726-01 11 124007350 124007350 A T VWA5A Missense_Mutation p.T532S 0.23 tolerated(0.82) benign(0.016) TCGA-60-2726-01 11 1263975 1263975 C T MUC5B Silent p.P1955P 0.26 TCGA-60-2726-01 11 20414474 20414474 A G PRMT3 Missense_Mutation p.Y110C 0.21 benign(0) TCGA-60-2726-01 11 212501 212501 T - RIC8A Frame_Shift_Del p.L352Rfs*18 0.28 TCGA-60-2726-01 11 30033775 30033775 A T KCNA4 Missense_Mutation p.C151S 0.22 tolerated(0.45) benign(0.001) TCGA-60-2726-01 11 31812271 31812271 G T PAX6 Silent p.G404G 0.18 TCGA-60-2726-01 11 4510214 4510214 G T OR52K1 Missense_Mutation p.W28C 0.24 deleterious(0) probably_damaging(0.999) TCGA-60-2726-01 11 46431886 46431886 T C AMBRA1 Missense_Mutation p.D960G 0.14 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-60-2726-01 11 4703143 4703143 G C OR51E2 Missense_Mutation p.L267V 0.21 tolerated(1) benign(0.014) TCGA-60-2726-01 11 5080646 5080646 G A OR52E2 Missense_Mutation p.T71I 0.27 tolerated(1) benign(0.001) TCGA-60-2726-01 11 5142411 5142411 G T OR52A4 RNA 0.26 TCGA-60-2726-01 11 5142540 5142541 - A OR52A4 RNA 0.18 TCGA-60-2726-01 11 51515299 51515299 C T OR4C46 Silent p.N6N 0.21 TCGA-60-2726-01 11 5253938 5253938 C T HBD 3'Flank 0.27 TCGA-60-2726-01 11 55064972 55064972 T A TRIM51HP RNA 0.27 TCGA-60-2726-01 11 55653317 55653317 T A TRIM51 Splice_Site p.X137_splice 0.18 TCGA-60-2726-01 11 56000266 56000266 T A OR5T2 Silent p.S132S 0.15 TCGA-60-2726-01 11 56345037 56345037 T C OR5M10 Missense_Mutation p.Q54R 0.18 tolerated(1) benign(0) TCGA-60-2726-01 11 60183065 60183065 C G MS4A14 Missense_Mutation p.F241L 0.17 deleterious(0.01) probably_damaging(0.977) TCGA-60-2726-01 11 62394373 62394373 G A GANAB Missense_Mutation p.H808Y 0.12 tolerated(0.06) benign(0.002) TCGA-60-2726-01 11 62502922 62502922 C T TTC9C Nonsense_Mutation p.R103* 0.33 TCGA-60-2726-01 11 6462155 6462155 C A HPX Missense_Mutation p.L13F 0.25 tolerated(0.18) benign(0.024) TCGA-60-2726-01 11 822507 822507 C A PNPLA2 Silent p.S199S 0.18 TCGA-60-2726-01 11 88300889 88300889 G C GRM5 Silent p.S654S 0.22 TCGA-60-2726-01 11 89774691 89774691 G A TRIM49C Silent p.R444R 0.18 TCGA-60-2726-01 12 100796511 100796511 T G SLC17A8 Missense_Mutation p.F347L 0.19 tolerated(0.09) probably_damaging(0.995) TCGA-60-2726-01 12 10194120 10194120 C G CLEC9A 5'UTR 0.13 TCGA-60-2726-01 12 11183143 11183143 G A TAS2R31 Silent p.C264C 0.15 TCGA-60-2726-01 12 119583429 119583429 C A SRRM4 Missense_Mutation p.P339T 0.19 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-60-2726-01 12 130649268 130649268 A T FZD10 3'UTR 0.21 TCGA-60-2726-01 12 132611165 132611165 G A RP13-977J11.5 RNA 0.19 TCGA-60-2726-01 12 2743545 2743545 A G CACNA1C Missense_Mutation p.N1352S 0.61 tolerated(0.13) benign(0.003) TCGA-60-2726-01 12 50594694 50594695 TT A LIMA1 Intron 0.11 TCGA-60-2726-01 12 52284862 52284862 G A ANKRD33 Missense_Mutation p.G378S 0.14 tolerated(0.31) benign(0.121) TCGA-60-2726-01 12 56082084 56082084 C T ITGA7 Missense_Mutation p.E991K 0.19 deleterious(0.01) benign(0.237) TCGA-60-2726-01 12 5756937 5756937 G A ANO2 Missense_Mutation p.R526C 0.09 deleterious(0) probably_damaging(0.927) TCGA-60-2726-01 12 6646779 6646779 G T GAPDH Missense_Mutation p.Q185H 0.32 deleterious_low_confidence(0) possibly_damaging(0.856) TCGA-60-2726-01 12 7076742 7076742 T A PHB2 Intron 0.30 TCGA-60-2726-01 12 78513143 78513143 T G NAV3 Missense_Mutation p.I1056S 0.13 tolerated(0.41) probably_damaging(0.974) TCGA-60-2726-01 12 81112734 81112734 C A MYF5 Silent p.L224L 0.21 TCGA-60-2726-01 12 8278191 8278191 T G CLEC4A Missense_Mutation p.N39K 0.17 tolerated(0.25) benign(0.082) TCGA-60-2726-01 12 82793073 82793073 G A METTL25 Missense_Mutation p.R344K 0.35 tolerated(0.08) benign(0.052) TCGA-60-2726-01 13 113158371 113158371 C A TUBGCP3 Missense_Mutation p.R761L 0.29 deleterious(0.02) probably_damaging(0.975) TCGA-60-2726-01 13 31037407 31037407 T A HMGB1 Missense_Mutation p.Y78F 0.26 deleterious(0.02) benign(0.38) TCGA-60-2726-01 13 32605877 32605877 C A FRY 5'UTR 0.65 TCGA-60-2726-01 13 32705840 32705840 G T FRY Nonsense_Mutation p.E250* 0.47 TCGA-60-2726-01 13 36521584 36521584 A G DCLK1 Missense_Mutation p.L245P 0.17 deleterious(0) unknown(0) TCGA-60-2726-01 14 101455520 101455520 C T SNORD114-28 RNA 0.20 TCGA-60-2726-01 14 106993954 106993954 T C IGHV3-48 Missense_Mutation p.S71G 0.33 tolerated_low_confidence(0.14) benign(0.013) TCGA-60-2726-01 14 19553558 19553558 G A POTEG Missense_Mutation p.D48N 0.04 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-60-2726-01 14 22321012 22321012 A G TRAV8-3 Missense_Mutation p.Q57R 0.13 deleterious(0.03) possibly_damaging(0.622) TCGA-60-2726-01 14 23502605 23502605 C A PSMB5 Missense_Mutation p.M159I 0.47 deleterious(0.01) possibly_damaging(0.476) TCGA-60-2726-01 14 51464728 51464728 C T TRIM9 Intron 0.13 TCGA-60-2726-01 14 63174229 63174229 A T KCNH5 Missense_Mutation p.F988L 0.23 deleterious_low_confidence(0) benign(0.153) TCGA-60-2726-01 14 68275998 68275998 G T ZFYVE26 Silent p.L94L 0.23 TCGA-60-2726-01 14 73442325 73442325 C T ZFYVE1 Silent p.K580K 0.22 TCGA-60-2726-01 14 73442367 73442367 G A ZFYVE1 Silent p.F566F 0.21 TCGA-60-2726-01 14 89181371 89181371 A G EML5 Silent p.S452S 0.25 TCGA-60-2726-01 14 91766287 91766287 G A CCDC88C Missense_Mutation p.R1255W 0.33 deleterious(0.03) benign(0.028) TCGA-60-2726-01 14 92268690 92268690 A C TC2N Missense_Mutation p.V126G 0.17 deleterious(0) benign(0.012) TCGA-60-2726-01 14 92792310 92792310 T A SLC24A4 Missense_Mutation p.C77S 0.29 deleterious(0) benign(0.341) TCGA-60-2726-01 14 94067100 94067100 A G UNC79 Silent p.E1009E 0.22 TCGA-60-2726-01 14 95058719 95058719 G T SERPINA5 3'UTR 0.14 TCGA-60-2726-01 14 96135927 96135927 A T TCL6 RNA 0.23 TCGA-60-2726-01 14 96794853 96794853 C A ATG2B Missense_Mutation p.S665I 0.21 deleterious(0.05) benign(0.069) TCGA-60-2726-01 15 20874803 20874803 C T NBEAP1 RNA 0.07 TCGA-60-2726-01 15 43427721 43427721 G C TMEM62 Missense_Mutation p.D102H 0.47 deleterious(0) probably_damaging(1) TCGA-60-2726-01 15 63929830 63929830 G A HERC1 Nonsense_Mutation p.Q4036* 0.50 TCGA-60-2726-01 15 79277260 79277260 G T RASGRF1 Intron 0.37 TCGA-60-2726-01 15 88679203 88679203 A G NTRK3 Silent p.N278N 0.16 TCGA-60-2726-01 15 93470511 93470511 G T CHD2 Missense_Mutation p.R111L 0.13 deleterious(0) probably_damaging(0.995) TCGA-60-2726-01 16 20348016 20348016 C A UMOD Missense_Mutation p.V592F 0.43 tolerated(0.85) benign(0.001) TCGA-60-2726-01 16 20384235 20384235 A C PDILT Missense_Mutation p.I269M 0.45 deleterious(0) probably_damaging(1) TCGA-60-2726-01 16 20570768 20570768 G T ACSM2B Missense_Mutation p.A60D 0.41 tolerated(0.42) benign(0.002) TCGA-60-2726-01 16 2203412 2203412 G T RAB26 Missense_Mutation p.C254F 0.05 deleterious(0) probably_damaging(0.999) TCGA-60-2726-01 16 30525157 30525157 A T ITGAL Missense_Mutation p.H951L 0.18 deleterious(0) probably_damaging(0.993) TCGA-60-2726-01 16 30525158 30525158 C T ITGAL Silent p.H951H 0.18 TCGA-60-2726-01 16 32890777 32890777 G C SLC6A10P RNA 0.17 TCGA-60-2726-01 16 50745641 50745641 C G NOD2 Missense_Mutation p.Q607E 0.45 deleterious(0) probably_damaging(0.997) TCGA-60-2726-01 16 61687975 61687975 C A CDH8 Missense_Mutation p.R646L 0.16 deleterious(0) probably_damaging(0.995) TCGA-60-2726-01 16 62055227 62055227 A T CDH8 Silent p.I27I 0.14 TCGA-60-2726-01 16 67645107 67645107 A G CTCF Silent p.V124V 0.49 TCGA-60-2726-01 16 80577174 80577174 C A DYNLRB2 Missense_Mutation p.A2E 0.21 deleterious(0) benign(0.022) TCGA-60-2726-01 16 85945236 85945236 G T IRF8 Missense_Mutation p.R140L 0.52 tolerated(0.63) benign(0.245) TCGA-60-2726-01 17 10438456 10438456 A G MYH2 Missense_Mutation p.L705P 0.55 deleterious(0) probably_damaging(0.999) TCGA-60-2726-01 17 16285604 16285604 A G UBB Missense_Mutation p.D128G 0.17 deleterious(0.04) benign(0.182) TCGA-60-2726-01 17 16843026 16843026 C T TNFRSF13B Silent p.A239A 0.19 TCGA-60-2726-01 17 30535162 30535162 G T RHOT1 Missense_Mutation p.V525L 0.35 deleterious(0.03) benign(0.174) TCGA-60-2726-01 17 33477133 33477133 G A UNC45B Missense_Mutation p.G91E 0.16 tolerated(0.21) possibly_damaging(0.806) TCGA-60-2726-01 17 3563741 3563741 G C CTNS Intron 0.49 TCGA-60-2726-01 17 38065241 38065241 G A GSDMB Nonsense_Mutation p.Q211* 0.18 TCGA-60-2726-01 17 42932010 42932010 C T EFTUD2 Missense_Mutation p.D725N 0.38 deleterious(0) probably_damaging(0.997) TCGA-60-2726-01 17 43906642 43906642 C T CRHR1 Missense_Mutation p.S130F 0.37 deleterious(0) probably_damaging(0.994) TCGA-60-2726-01 17 44116482 44116482 G A KANSL1 Missense_Mutation p.A768V 0.18 tolerated(0.46) benign(0.067) TCGA-60-2726-01 17 46670559 46670559 C T HOXB5 Missense_Mutation p.M162I 0.22 tolerated(0.21) benign(0) TCGA-60-2726-01 17 47126782 47126782 C A IGF2BP1 Missense_Mutation p.N570K 0.08 deleterious_low_confidence(0.03) benign(0.004) TCGA-60-2726-01 17 65026669 65026669 A G CACNG4 Missense_Mutation p.H178R 0.35 tolerated(0.09) benign(0.315) TCGA-60-2726-01 17 67081324 67081324 C G ABCA6 Splice_Site p.X1344_splice 0.19 TCGA-60-2726-01 17 72239531 72239531 G T TTYH2 Silent p.L218L 0.12 TCGA-60-2726-01 17 78866598 78866598 G A RPTOR Missense_Mutation p.G724E 0.17 tolerated(0.2) benign(0.195) TCGA-60-2726-01 17 79534552 79534552 T C NPLOC4 Missense_Mutation p.H486R 0.31 tolerated(0.48) possibly_damaging(0.499) TCGA-60-2726-01 18 10488053 10488053 A G APCDD1 3'UTR 0.16 TCGA-60-2726-01 18 13387658 13387658 C T LDLRAD4 5'UTR 0.19 TCGA-60-2726-01 18 13741647 13741647 G - RNMT Frame_Shift_Del p.G312Afs*13 0.17 TCGA-60-2726-01 18 14478693 14478693 T A CXADRP3 RNA 0.20 TCGA-60-2726-01 18 14542972 14542972 C A POTEC Missense_Mutation p.R58S 0.10 deleterious_low_confidence(0) benign(0.227) TCGA-60-2726-01 18 28979337 28979337 A G DSG4 Missense_Mutation p.T370A 0.13 deleterious(0.01) possibly_damaging(0.727) TCGA-60-2726-01 18 2921625 2921625 G A LPIN2 Missense_Mutation p.P783L 0.31 deleterious(0) probably_damaging(1) TCGA-60-2726-01 18 31599452 31599452 C A NOL4 Missense_Mutation p.G296W 0.26 deleterious(0.01) possibly_damaging(0.575) TCGA-60-2726-01 18 55270146 55270146 C T NARS Missense_Mutation p.M427I 0.28 deleterious(0.02) benign(0.346) TCGA-60-2726-01 19 1014274 1014274 C A TMEM259 Missense_Mutation p.V142L 0.34 tolerated(0.7) benign(0.004) TCGA-60-2726-01 19 11531430 11531430 C T CCDC151 3'UTR 0.53 TCGA-60-2726-01 19 14574647 14574647 G A PKN1 Silent p.A507A 0.27 TCGA-60-2726-01 19 15734154 15734154 T C CYP4F8 RNA 0.49 TCGA-60-2726-01 19 15734155 15734155 G T CYP4F8 RNA 0.51 TCGA-60-2726-01 19 17298786 17298786 C T MYO9B Missense_Mutation p.R874C 0.59 deleterious(0) probably_damaging(0.999) TCGA-60-2726-01 19 17534529 17534529 G A MVB12A Silent p.A187A 0.51 TCGA-60-2726-01 19 20307839 20307839 T G ZNF486 Missense_Mutation p.V107G 0.32 deleterious(0.03) benign(0.075) TCGA-60-2726-01 19 24010344 24010344 C T RPSAP58 Silent p.P127P 0.18 TCGA-60-2726-01 19 31048120 31048120 G T ZNF536 3'UTR 0.25 TCGA-60-2726-01 19 36431636 36431636 G T LRFN3 Missense_Mutation p.G437W 0.41 deleterious(0) probably_damaging(0.969) TCGA-60-2726-01 19 36883553 36883553 T C ZFP82 3'UTR 0.61 TCGA-60-2726-01 19 43529134 43529134 C G PSG11 Missense_Mutation p.E47Q 0.46 deleterious(0.03) probably_damaging(0.958) TCGA-60-2726-01 19 49548347 49548347 C T CGB5 Silent p.P98P 0.13 TCGA-60-2726-01 19 53571254 53571254 C A ZNF160 3'UTR 0.17 TCGA-60-2726-01 19 53987045 53987045 G C ZNF813 5'UTR 0.31 TCGA-60-2726-01 19 54137819 54137819 C A DPRX Silent p.T21T 0.22 TCGA-60-2726-01 19 54313978 54313978 A G NLRP12 Missense_Mutation p.L312P 0.43 tolerated(0.16) probably_damaging(0.914) TCGA-60-2726-01 19 57641347 57641347 C G USP29 Missense_Mutation p.S435C 0.43 deleterious(0) probably_damaging(0.983) TCGA-60-2726-01 19 57646678 57646678 C A ZIM3 Missense_Mutation p.A343S 0.15 tolerated(0.1) probably_damaging(0.995) TCGA-60-2726-01 19 58420580 58420580 C T ZNF417 Missense_Mutation p.E356K 0.25 tolerated(0.07) possibly_damaging(0.885) TCGA-60-2726-01 19 58858380 58858380 C A A1BG 3'UTR 0.34 TCGA-60-2726-01 19 6984718 6984718 G A EMR4P RNA 0.10 TCGA-60-2726-01 1 10165736 10165736 G A UBE4B Missense_Mutation p.G248D 0.24 tolerated_low_confidence(0.07) probably_damaging(0.931) TCGA-60-2726-01 1 103481245 103481245 A T COL11A1 Silent p.P489P 0.15 TCGA-60-2726-01 1 110765934 110765934 C T KCNC4 Silent p.L343L 0.17 TCGA-60-2726-01 1 11137693 11137693 C A EXOSC10 Nonsense_Mutation p.G589* 0.22 TCGA-60-2726-01 1 112318854 112318854 A T KCND3 Missense_Mutation p.C605S 0.24 tolerated_low_confidence(0.09) benign(0.152) TCGA-60-2726-01 1 152276454 152276454 G T FLG Missense_Mutation p.S3636R 0.24 unknown(0) TCGA-60-2726-01 1 158390635 158390635 C G OR10K2 Missense_Mutation p.V8L 0.17 tolerated(1) benign(0.001) TCGA-60-2726-01 1 158908929 158908929 G A PYHIN1 Silent p.E157E 0.21 TCGA-60-2726-01 1 162722955 162722955 G T DDR2 Missense_Mutation p.Q51H 0.36 tolerated(0.53) benign(0.149) TCGA-60-2726-01 1 166818285 166818285 G T POGK Missense_Mutation p.D157Y 0.39 deleterious_low_confidence(0) benign(0.174) TCGA-60-2726-01 1 180199735 180199735 T G LHX4 Missense_Mutation p.M24R 0.36 tolerated(0.2) benign(0.007) TCGA-60-2726-01 1 185089001 185089001 A T TRMT1L 3'UTR 0.16 TCGA-60-2726-01 1 186330008 186330008 C A TPR Nonsense_Mutation p.E330* 0.30 TCGA-60-2726-01 1 190423959 190423959 A T BRINP3 Missense_Mutation p.I21K 0.43 deleterious_low_confidence(0.01) benign(0.1) TCGA-60-2726-01 1 196965150 196965150 A T CFHR5 Splice_Site p.X264_splice 0.19 TCGA-60-2726-01 1 197021778 197021778 A G F13B Missense_Mutation p.L514S 0.16 tolerated(0.51) benign(0.022) TCGA-60-2726-01 1 197522157 197522157 C A DENND1B Missense_Mutation p.C412F 0.28 deleterious(0.01) possibly_damaging(0.602) TCGA-60-2726-01 1 202273705 202273705 C A LGR6 Silent p.G339G 0.18 TCGA-60-2726-01 1 20302071 20302071 C T PLA2G2A 3'UTR 0.20 TCGA-60-2726-01 1 210273513 210273513 A T SYT14 Missense_Mutation p.N336Y 0.19 deleterious(0) possibly_damaging(0.477) TCGA-60-2726-01 1 22176642 22176642 C T HSPG2 Silent p.S2446S 0.25 TCGA-60-2726-01 1 224473776 224473776 C A NVL Silent p.G617G 0.23 TCGA-60-2726-01 1 224475586 224475586 G C NVL Nonsense_Mutation p.S562* 0.17 TCGA-60-2726-01 1 241912978 241912978 A T WDR64 Missense_Mutation p.Q565L 0.36 tolerated(0.07) benign(0) TCGA-60-2726-01 1 242162375 242162376 CT - MAP1LC3C 5'UTR 0.21 TCGA-60-2726-01 1 247614764 247614764 C A OR2B11 Missense_Mutation p.G174V 0.26 deleterious(0) probably_damaging(1) TCGA-60-2726-01 1 247655105 247655105 G A OR2W5 RNA 0.17 TCGA-60-2726-01 1 247655166 247655166 A T OR2W5 RNA 0.16 TCGA-60-2726-01 1 247920976 247920976 G T OR1C1 Missense_Mutation p.L245M 0.33 deleterious(0) possibly_damaging(0.874) TCGA-60-2726-01 1 248129011 248129011 A T OR2AK2 Missense_Mutation p.E126D 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-60-2726-01 1 248525461 248525461 C A OR2T4 Silent p.P193P 0.20 TCGA-60-2726-01 1 248737876 248737876 G T OR2T34 Missense_Mutation p.H61Q 0.13 deleterious(0.02) possibly_damaging(0.656) TCGA-60-2726-01 1 25124287 25124287 A G CLIC4 Missense_Mutation p.M43V 0.23 deleterious(0) possibly_damaging(0.654) TCGA-60-2726-01 1 28858488 28858490 AGC - RCC1 In_Frame_Del p.S114del 0.33 TCGA-60-2726-01 1 45500116 45500116 A T ZSWIM5 Missense_Mutation p.S773T 0.21 tolerated(0.1) unknown(0) TCGA-60-2726-01 1 54433427 54433427 G C LRRC42 Missense_Mutation p.E368Q 0.26 tolerated(0.35) possibly_damaging(0.529) TCGA-60-2726-01 1 62190916 62190916 T A TM2D1 Silent p.R21R 0.16 TCGA-60-2726-01 1 62190917 62190917 C A TM2D1 Missense_Mutation p.R21L 0.16 deleterious_low_confidence(0) unknown(0) TCGA-60-2726-01 1 6639480 6639480 C T TAS1R1 Silent p.L788L 0.15 TCGA-60-2726-01 1 70509681 70509681 C A LRRC7 Silent p.P1300P 0.23 TCGA-60-2726-01 1 79383662 79383662 C G ELTD1 Missense_Mutation p.G512A 0.21 deleterious(0.04) probably_damaging(1) TCGA-60-2726-01 1 92430225 92430225 A T BRDT Silent p.T78T 0.25 TCGA-60-2726-01 1 99772636 99772636 A T LPPR4 3'UTR 0.29 TCGA-60-2726-01 20 16254017 16254017 C G KIF16B Missense_Mutation p.A464P 0.30 tolerated(1) benign(0.004) TCGA-60-2726-01 20 20601113 20601113 G C RALGAPA2 Missense_Mutation p.S465R 0.30 tolerated(0.47) benign(0.01) TCGA-60-2726-01 20 22562405 22562405 C A FOXA2 3'UTR 0.13 TCGA-60-2726-01 20 37356472 37356472 C T SLC32A1 Silent p.F256F 0.18 TCGA-60-2726-01 20 37356623 37356623 C A SLC32A1 Missense_Mutation p.P307T 0.16 tolerated(0.08) probably_damaging(0.93) TCGA-60-2726-01 20 44181840 44181840 T A WFDC8 Missense_Mutation p.D174V 0.28 deleterious(0) probably_damaging(0.996) TCGA-60-2726-01 20 44684805 44684805 A T SLC12A5 Missense_Mutation p.D958V 0.28 deleterious(0.04) possibly_damaging(0.822) TCGA-60-2726-01 20 55033756 55033756 G A CASS4 Missense_Mutation p.E772K 0.18 tolerated(0.17) benign(0.029) TCGA-60-2726-01 20 62899256 62899256 G A PCMTD2 Missense_Mutation p.R200H 0.12 deleterious(0) probably_damaging(0.998) TCGA-60-2726-01 21 10908867 10908867 G T TPTE Nonsense_Mutation p.S493* 0.08 TCGA-60-2726-01 21 27852619 27852619 A T CYYR1 Silent p.T102T 0.21 TCGA-60-2726-01 21 32185561 32185561 G C KRTAP8-1 5'UTR 0.13 TCGA-60-2726-01 21 41151188 41151188 G T IGSF5 Missense_Mutation p.C297F 0.19 tolerated(0.62) benign(0.059) TCGA-60-2726-01 22 42290907 42290907 A T SREBF2 Nonsense_Mutation p.K821* 0.20 TCGA-60-2726-01 2 106739541 106739541 T G UXS1 Missense_Mutation p.E215A 0.18 tolerated(0.1) possibly_damaging(0.887) TCGA-60-2726-01 2 125204397 125204397 G A CNTNAP5 Silent p.Q267Q 0.19 TCGA-60-2726-01 2 125671718 125671718 G T CNTNAP5 Missense_Mutation p.M1258I 0.15 tolerated(0.45) probably_damaging(0.989) TCGA-60-2726-01 2 127961052 127961052 A T CYP27C1 Missense_Mutation p.V25D 0.22 deleterious(0) probably_damaging(1) TCGA-60-2726-01 2 133542459 133542459 G A NCKAP5 Missense_Mutation p.S642L 0.13 tolerated(0.74) benign(0.003) TCGA-60-2726-01 2 141108479 141108479 C A LRP1B Missense_Mutation p.D3927Y 0.35 possibly_damaging(0.861) TCGA-60-2726-01 2 152422331 152422331 C T NEB Missense_Mutation p.V6054I 0.15 benign(0.01) TCGA-60-2726-01 2 155555209 155555209 C A KCNJ3 5'UTR 0.22 TCGA-60-2726-01 2 16082411 16082411 G T MYCN Silent p.P75P 0.17 TCGA-60-2726-01 2 163031404 163031404 C G FAP Missense_Mutation p.A648P 0.17 deleterious(0.03) possibly_damaging(0.598) TCGA-60-2726-01 2 168104375 168104375 G A XIRP2 Missense_Mutation p.S2158N 0.34 benign(0.008) TCGA-60-2726-01 2 179406233 179406233 T A TTN Missense_Mutation p.E32524V 0.22 TCGA-60-2726-01 2 179406234 179406234 C T TTN Missense_Mutation p.E32524K 0.22 TCGA-60-2726-01 2 179974586 179974586 C T SESTD1 3'UTR 0.15 TCGA-60-2726-01 2 182344882 182344882 G T ITGA4 Missense_Mutation p.A215S 0.41 deleterious(0) probably_damaging(0.998) TCGA-60-2726-01 2 187368899 187368899 G A ZC3H15 Silent p.E225E 0.17 TCGA-60-2726-01 2 187702112 187702112 C G ZSWIM2 Missense_Mutation p.E222Q 0.13 deleterious(0) probably_damaging(0.998) TCGA-60-2726-01 2 197757926 197757926 T C PGAP1 Missense_Mutation p.H324R 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-60-2726-01 2 206988912 206988912 G C NDUFS1 Missense_Mutation p.C741W 0.38 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-60-2726-01 2 21232599 21232599 G A APOB Silent p.L2381L 0.18 TCGA-60-2726-01 2 215896613 215896613 G A ABCA12 Silent p.S331S 0.08 TCGA-60-2726-01 2 233990506 233990506 C A INPP5D Missense_Mutation p.T134N 0.21 tolerated(0.08) benign(0.048) TCGA-60-2726-01 2 234580890 234580890 A C UGT1A9 Missense_Mutation p.S104R 0.20 tolerated(0.56) benign(0.02) TCGA-60-2726-01 2 237246993 237246993 G A IQCA1 Silent p.P663P 0.17 TCGA-60-2726-01 2 240085594 240085594 C A HDAC4 Missense_Mutation p.K172N 0.23 deleterious(0) probably_damaging(0.998) TCGA-60-2726-01 2 240111549 240111549 G T HDAC4 Missense_Mutation p.Q107K 0.28 deleterious(0.01) probably_damaging(0.996) TCGA-60-2726-01 2 241715339 241715339 T A KIF1A Missense_Mutation p.K296M 0.16 deleterious(0) probably_damaging(0.982) TCGA-60-2726-01 2 42909590 42909590 C A MTA3 Missense_Mutation p.A251D 0.15 deleterious(0) possibly_damaging(0.792) TCGA-60-2726-01 2 46228648 46228648 C T PRKCE Missense_Mutation p.P310L 0.21 deleterious(0.01) benign(0.364) TCGA-60-2726-01 2 50463932 50463932 G T NRXN1 Missense_Mutation p.H1221N 0.16 deleterious(0.01) benign(0.064) TCGA-60-2726-01 2 77746492 77746492 G A LRRTM4 Missense_Mutation p.S168L 0.14 tolerated(0.19) probably_damaging(0.999) TCGA-60-2726-01 2 79363272 79363272 C G REG1P RNA 0.47 TCGA-60-2726-01 2 80530967 80530967 A C LRRTM1 5'UTR 0.25 TCGA-60-2726-01 2 80782995 80782995 C A CTNNA2 Missense_Mutation p.A573D 0.11 tolerated(0.09) possibly_damaging(0.45) TCGA-60-2726-01 2 9474892 9474892 G T ASAP2 Missense_Mutation p.V238L 0.24 deleterious(0.04) possibly_damaging(0.756) TCGA-60-2726-01 3 100976537 100976537 G C IMPG2 Missense_Mutation p.S330C 0.18 deleterious(0) probably_damaging(1) TCGA-60-2726-01 3 108698408 108698408 T A MORC1 Missense_Mutation p.S811C 0.09 tolerated(0.18) benign(0.214) TCGA-60-2726-01 3 109049275 109049275 A C DPPA4 Intron 0.07 TCGA-60-2726-01 3 119133513 119133513 T C ARHGAP31 Missense_Mutation p.W913R 0.08 deleterious(0) probably_damaging(0.999) TCGA-60-2726-01 3 123036947 123036947 G A ADCY5 Silent p.D758D 0.13 TCGA-60-2726-01 3 123049852 123049852 A G ADCY5 Silent p.C510C 0.16 TCGA-60-2726-01 3 127379640 127379640 G T PODXL2 Missense_Mutation p.D257Y 0.24 deleterious(0.01) benign(0.231) TCGA-60-2726-01 3 145806374 145806374 T A PLOD2 Missense_Mutation p.K335I 0.09 deleterious(0.04) benign(0.139) TCGA-60-2726-01 3 147128108 147128108 G T ZIC1 Missense_Mutation p.G70V 0.50 deleterious(0.02) probably_damaging(0.975) TCGA-60-2726-01 3 147128132 147128132 G T ZIC1 Missense_Mutation p.G78V 0.26 deleterious(0.04) probably_damaging(0.993) TCGA-60-2726-01 3 160146715 160146715 T A SMC4 Missense_Mutation p.I927N 0.21 deleterious(0.02) benign(0.128) TCGA-60-2726-01 3 160146716 160146716 C A SMC4 Silent p.I927I 0.21 TCGA-60-2726-01 3 170611005 170611005 C A EIF5A2 3'UTR 0.59 TCGA-60-2726-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.26 deleterious(0.04) probably_damaging(0.96) TCGA-60-2726-01 3 179447977 179447977 G T USP13 Silent p.A363A 0.17 TCGA-60-2726-01 3 185146681 185146681 G T MAP3K13 Silent p.T104T 0.43 TCGA-60-2726-01 3 189526287 189526287 C G TP63 Missense_Mutation p.S184W 0.26 deleterious(0) probably_damaging(0.999) TCGA-60-2726-01 3 47374703 47374703 C T KLHL18 Silent p.Y219Y 0.31 TCGA-60-2726-01 3 50677815 50677815 A T MAPKAPK3 Nonsense_Mutation p.K80* 0.21 TCGA-60-2726-01 3 51431014 51431014 G C RBM15B Missense_Mutation p.L728F 0.51 deleterious(0) probably_damaging(0.999) TCGA-60-2726-01 3 56680635 56680635 C T FAM208A Silent p.L710L 0.23 TCGA-60-2726-01 3 62257209 62257209 G A PTPRG Missense_Mutation p.G1054D 0.48 deleterious(0) probably_damaging(1) TCGA-60-2726-01 3 98188809 98188809 T G OR5K1 Missense_Mutation p.L130R 0.12 deleterious(0) probably_damaging(0.999) TCGA-60-2726-01 4 100503108 100503108 C G MTTP Silent p.L36L 0.27 TCGA-60-2726-01 4 104640781 104640781 C T TACR3 Missense_Mutation p.G18S 0.26 tolerated_low_confidence(0.14) benign(0.002) TCGA-60-2726-01 4 113540013 113540013 A G C4orf21 Silent p.D395D 0.24 TCGA-60-2726-01 4 134073364 134073364 G T PCDH10 Missense_Mutation p.G690V 0.24 tolerated(0.4) probably_damaging(0.99) TCGA-60-2726-01 4 134073527 134073527 G A PCDH10 Silent p.K744K 0.16 TCGA-60-2726-01 4 13603022 13603022 C T BOD1L1 Silent p.V1834V 0.24 TCGA-60-2726-01 4 13603309 13603309 A C BOD1L1 Missense_Mutation p.F1739V 0.22 benign(0.367) TCGA-60-2726-01 4 151114287 151114287 C G DCLK2 Intron 0.21 TCGA-60-2726-01 4 152058934 152058934 T C SH3D19 Missense_Mutation p.N536D 0.20 deleterious(0.01) benign(0.09) TCGA-60-2726-01 4 156618161 156618161 C G GUCY1A3 Missense_Mutation p.Q48E 0.16 tolerated(0.33) benign(0.001) TCGA-60-2726-01 4 156723541 156723541 A G GUCY1B3 Missense_Mutation p.H408R 0.21 deleterious(0.03) possibly_damaging(0.661) TCGA-60-2726-01 4 183245126 183245126 C A TENM3 5'UTR 0.47 TCGA-60-2726-01 4 189063605 189063606 - A TRIML1 Frame_Shift_Ins p.S236Kfs*10 0.29 TCGA-60-2726-01 4 189065247 189065247 C A TRIML1 Nonsense_Mutation p.C272* 0.07 TCGA-60-2726-01 4 20493479 20493479 C G SLIT2 Missense_Mutation p.L291V 0.23 deleterious(0) probably_damaging(0.994) TCGA-60-2726-01 4 26483347 26483347 C A CCKAR Silent p.V400V 0.21 TCGA-60-2726-01 4 41684398 41684398 T C LIMCH1 Missense_Mutation p.W872R 0.33 tolerated(0.46) benign(0.001) TCGA-60-2726-01 4 42119669 42119669 C G BEND4 Missense_Mutation p.V491L 0.22 deleterious_low_confidence(0.01) probably_damaging(0.935) TCGA-60-2726-01 4 48514564 48514564 C T FRYL Silent p.Q2693Q 0.15 TCGA-60-2726-01 4 53234 53234 G A ZNF595 5'UTR 0.14 TCGA-60-2726-01 4 53328 53328 C A ZNF595 5'UTR 0.04 TCGA-60-2726-01 4 5630331 5630331 C A EVC2 Missense_Mutation p.S614I 0.21 deleterious(0) probably_damaging(0.954) TCGA-60-2726-01 4 66197649 66197649 T C EPHA5 Intron 0.12 TCGA-60-2726-01 4 66280104 66280104 C T EPHA5 Missense_Mutation p.G529S 0.24 tolerated(0.07) benign(0.047) TCGA-60-2726-01 4 68938072 68938072 C G TMPRSS11F Missense_Mutation p.L161F 0.08 tolerated(0.11) benign(0.132) TCGA-60-2726-01 4 69696567 69696567 T A UGT2B10 Silent p.A519A 0.33 TCGA-60-2726-01 4 70080354 70080354 C A UGT2B11 Missense_Mutation p.W29C 0.29 deleterious(0.02) probably_damaging(1) TCGA-60-2726-01 4 70155405 70155405 A G UGT2B28 Missense_Mutation p.N342S 0.22 deleterious(0) benign(0.016) TCGA-60-2726-01 4 73957392 73957392 T C ANKRD17 Missense_Mutation p.T1985A 0.13 benign(0) TCGA-60-2726-01 4 86896082 86896082 G T ARHGAP24 Silent p.V258V 0.25 TCGA-60-2726-01 5 122950128 122950128 G C CSNK1G3 3'UTR 0.26 TCGA-60-2726-01 5 127686619 127686619 G T FBN2 Missense_Mutation p.S918Y 0.25 deleterious(0) probably_damaging(0.982) TCGA-60-2726-01 5 129039944 129039944 T A ADAMTS19 Missense_Mutation p.C1052S 0.17 deleterious(0) probably_damaging(1) TCGA-60-2726-01 5 131726406 131726406 T G SLC22A5 Missense_Mutation p.F359L 0.20 tolerated(0.07) possibly_damaging(0.737) TCGA-60-2726-01 5 140228222 140228222 A G PCDHA9 Missense_Mutation p.I48V 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.6) TCGA-60-2726-01 5 140250047 140250047 G C PCDHA11 Silent p.A453A 0.23 TCGA-60-2726-01 5 140594731 140594731 C A PCDHB13 Missense_Mutation p.P346T 0.16 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-60-2726-01 5 140698550 140698550 T C TAF7 3'UTR 0.33 TCGA-60-2726-01 5 140710502 140710502 T G PCDHGA1 Missense_Mutation p.L84W 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-60-2726-01 5 140789170 140789170 A T PCDHGB6 Silent p.P467P 0.18 TCGA-60-2726-01 5 147481341 147481341 C G SPINK5 Intron 0.17 TCGA-60-2726-01 5 161281237 161281237 C T GABRA1 Silent p.L50L 0.19 TCGA-60-2726-01 5 162886887 162886887 C - NUDCD2 Frame_Shift_Del p.G57Afs*15 0.46 TCGA-60-2726-01 5 173317235 173317235 G T CPEB4 Missense_Mutation p.G167C 0.21 deleterious_low_confidence(0) possibly_damaging(0.88) TCGA-60-2726-01 5 176011694 176011695 - C CDHR2 Frame_Shift_Ins p.T807Hfs*14 0.34 TCGA-60-2726-01 5 19483410 19483410 C A CDH18 Missense_Mutation p.A628S 0.13 deleterious(0) probably_damaging(0.985) TCGA-60-2726-01 5 21752313 21752313 G T CDH12 Missense_Mutation p.Q640K 0.06 tolerated(0.12) possibly_damaging(0.905) TCGA-60-2726-01 5 24488107 24488107 G A CDH10 Missense_Mutation p.P678S 0.16 tolerated(0.07) probably_damaging(0.992) TCGA-60-2726-01 5 24498605 24498605 C T CDH10 Missense_Mutation p.V473M 0.08 deleterious(0.03) possibly_damaging(0.836) TCGA-60-2726-01 5 32420011 32420011 G A ZFR Missense_Mutation p.A112V 0.16 tolerated(0.2) possibly_damaging(0.731) TCGA-60-2726-01 5 34911720 34911720 C T RAD1 Missense_Mutation p.E169K 0.14 deleterious(0.01) possibly_damaging(0.625) TCGA-60-2726-01 5 35876139 35876139 G A IL7R Missense_Mutation p.V311M 0.56 deleterious(0) probably_damaging(0.999) TCGA-60-2726-01 5 3599690 3599690 A G IRX1 Missense_Mutation p.T210A 0.40 tolerated(0.18) possibly_damaging(0.899) TCGA-60-2726-01 5 41064647 41064647 C A MROH2B Missense_Mutation p.M129I 0.10 tolerated(0.08) benign(0.284) TCGA-60-2726-01 5 41313699 41313699 G A PLCXD3 3'UTR 0.50 TCGA-60-2726-01 5 43506461 43506461 G A C5orf34 Silent p.P107P 0.13 TCGA-60-2726-01 5 43656767 43656767 C T NNT Missense_Mutation p.S769F 0.17 deleterious(0) probably_damaging(0.999) TCGA-60-2726-01 5 5186346 5186346 G A ADAMTS16 Silent p.V315V 0.07 TCGA-60-2726-01 5 68473065 68473065 G C CCNB1 Splice_Site p.X362_splice 0.19 TCGA-60-2726-01 5 95728602 95728602 A G PCSK1 3'UTR 0.27 TCGA-60-2726-01 5 99871237 99871237 G A FAM174A Translation_Start_Site p.M1? 0.17 deleterious_low_confidence(0) benign(0.072) TCGA-60-2726-01 6 116289811 116289811 C T FRK Silent p.L186L 0.43 TCGA-60-2726-01 6 119301350 119301350 C T FAM184A Missense_Mutation p.V752I 0.33 tolerated(0.41) benign(0.03) TCGA-60-2726-01 6 132874072 132874072 G T TAAR8 Missense_Mutation p.G81C 0.44 deleterious(0) probably_damaging(0.999) TCGA-60-2726-01 6 136597033 136597033 G A BCLAF1 Missense_Mutation p.R544C 0.08 deleterious(0) possibly_damaging(0.835) TCGA-60-2726-01 6 146480698 146480698 C A GRM1 Silent p.R305R 0.18 TCGA-60-2726-01 6 152472788 152472788 C T SYNE1 Missense_Mutation p.R8117Q 0.25 probably_damaging(0.995) TCGA-60-2726-01 6 152485394 152485394 C A SYNE1 Missense_Mutation p.R7898S 0.24 benign(0.063) TCGA-60-2726-01 6 155750040 155750040 G - NOX3 Frame_Shift_Del p.Q345Rfs*49 0.23 TCGA-60-2726-01 6 159420467 159420467 G T RSPH3 Missense_Mutation p.P181Q 0.23 tolerated(0.15) benign(0.016) TCGA-60-2726-01 6 168440760 168440760 C G KIF25 Silent p.A170A 0.51 TCGA-60-2726-01 6 170176505 170176505 C T ERMARD Intron 0.64 TCGA-60-2726-01 6 170627121 170627121 C G FAM120B Missense_Mutation p.L215V 0.22 deleterious(0) probably_damaging(0.998) TCGA-60-2726-01 6 26189193 26189193 G A HIST1H4D Silent p.L38L 0.26 TCGA-60-2726-01 6 27839634 27839634 G A HIST1H3I 3'UTR 0.19 TCGA-60-2726-01 6 28228142 28228142 C A NKAPL Silent p.I331I 0.36 TCGA-60-2726-01 6 29364974 29364974 C A OR12D2 Missense_Mutation p.F166L 0.42 deleterious(0.01) possibly_damaging(0.658) TCGA-60-2726-01 6 32036344 32036344 C G TNXB Missense_Mutation p.D2015H 0.08 probably_damaging(0.999) TCGA-60-2726-01 6 32036704 32036704 C A TNXB Missense_Mutation p.D1933Y 0.11 probably_damaging(0.999) TCGA-60-2726-01 6 50682991 50682991 C A TFAP2D Missense_Mutation p.P68T 0.17 tolerated(0.1) benign(0.001) TCGA-60-2726-01 6 53519386 53519386 A C KLHL31 Missense_Mutation p.S229A 0.18 deleterious(0.01) possibly_damaging(0.873) TCGA-60-2726-01 6 55922602 55922602 T A COL21A1 Silent p.P909P 0.41 TCGA-60-2726-01 6 72974742 72974742 T C RIMS1 Missense_Mutation p.W1061R 0.35 tolerated(0.35) probably_damaging(0.979) TCGA-60-2726-01 6 78172433 78172433 G A HTR1B Missense_Mutation p.R230C 0.18 deleterious(0) probably_damaging(0.993) TCGA-60-2726-01 6 88299704 88299704 C A RARS2 5'UTR 0.56 TCGA-60-2726-01 6 90605323 90605323 C T GJA10 Missense_Mutation p.P379L 0.43 deleterious(0.05) benign(0.02) TCGA-60-2726-01 6 96651063 96651063 C A FUT9 Missense_Mutation p.P11Q 0.31 tolerated(0.39) possibly_damaging(0.609) TCGA-60-2726-01 7 100451837 100451837 A T SLC12A9 Silent p.S6S 0.33 TCGA-60-2726-01 7 103183179 103183179 T A RELN Nonsense_Mutation p.R2224* 0.23 TCGA-60-2726-01 7 10973162 10973162 G A NDUFA4 3'UTR 0.26 TCGA-60-2726-01 7 112130073 112130073 A G LSMEM1 3'UTR 0.13 TCGA-60-2726-01 7 115590929 115590929 G T TFEC Missense_Mutation p.P172T 0.06 deleterious(0.01) probably_damaging(0.993) TCGA-60-2726-01 7 122787311 122787311 T A SLC13A1 Missense_Mutation p.K238N 0.48 deleterious(0) probably_damaging(1) TCGA-60-2726-01 7 126173615 126173615 G A GRM8 Silent p.R607R 0.18 TCGA-60-2726-01 7 142567636 142567636 A T EPHB6 Missense_Mutation p.S842C 0.22 deleterious(0) probably_damaging(1) TCGA-60-2726-01 7 146536904 146536904 T A CNTNAP2 Missense_Mutation p.Y104N 0.13 deleterious(0) probably_damaging(1) TCGA-60-2726-01 7 148979219 148979219 C T ZNF783 Missense_Mutation p.R476C 0.25 deleterious(0.02) probably_damaging(0.944) TCGA-60-2726-01 7 151970857 151970857 G A KMT2C Silent p.G315G 0.03 TCGA-60-2726-01 7 21751446 21751446 G A DNAH11 Silent p.L2324L 0.38 TCGA-60-2726-01 7 2565317 2565317 A T LFNG Splice_Site p.X246_splice 0.28 TCGA-60-2726-01 7 31124364 31124364 C A ADCYAP1R1 Missense_Mutation p.L151M 0.12 tolerated(0.32) benign(0.13) TCGA-60-2726-01 7 38279757 38279757 C A TRGC2 Silent p.L146L 0.36 TCGA-60-2726-01 7 38299821 38299821 C A TRGC1 Silent p.L130L 0.19 TCGA-60-2726-01 7 38807137 38807137 C T VPS41 Missense_Mutation p.R416H 0.15 deleterious(0.02) probably_damaging(0.964) TCGA-60-2726-01 7 57194369 57194369 G A ZNF479 Silent p.C32C 0.31 TCGA-60-2726-01 7 57529671 57529671 C G ZNF716 3'UTR 0.36 TCGA-60-2726-01 7 64530843 64530843 C A SNORA22 3'Flank 0.10 TCGA-60-2726-01 7 77567025 77567025 A G PHTF2 Splice_Site p.X413_splice 0.29 TCGA-60-2726-01 7 94992098 94992098 C T PON3 Missense_Mutation p.D251N 0.04 tolerated(0.5) benign(0.038) TCGA-60-2726-01 7 95157272 95157272 T C ASB4 Missense_Mutation p.L212P 0.19 deleterious(0) probably_damaging(0.998) TCGA-60-2726-01 7 99474293 99474293 G T OR2AE1 Missense_Mutation p.R122S 0.28 deleterious(0) probably_damaging(0.998) TCGA-60-2726-01 8 104709460 104709460 G T RIMS2 Missense_Mutation p.C108F 0.54 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-60-2726-01 8 110984732 110984732 C T KCNV1 Missense_Mutation p.C249Y 0.36 deleterious(0) probably_damaging(0.998) TCGA-60-2726-01 8 113657357 113657357 A T CSMD3 Silent p.V1097V 0.28 TCGA-60-2726-01 8 117874111 117874111 G C RAD21 Missense_Mutation p.H115D 0.22 deleterious(0.01) benign(0.336) TCGA-60-2726-01 8 120628618 120628618 A G ENPP2 Missense_Mutation p.Y222H 0.64 deleterious(0.03) probably_damaging(0.956) TCGA-60-2726-01 8 125570011 125570011 G A MTSS1 Missense_Mutation p.R381W 0.16 tolerated(0.05) probably_damaging(0.988) TCGA-60-2726-01 8 143961099 143961099 C T CYP11B1 Missense_Mutation p.R44H 0.13 tolerated(0.51) benign(0) TCGA-60-2726-01 8 145003943 145003943 G A PLEC Missense_Mutation p.H1069Y 0.14 unknown(0) TCGA-60-2726-01 8 145689723 145689723 C A CYHR1 Intron 0.58 TCGA-60-2726-01 8 20107455 20107455 C G LZTS1 Silent p.S523S 0.20 TCGA-60-2726-01 8 20107456 20107456 G A LZTS1 Missense_Mutation p.S523L 0.19 deleterious(0.03) probably_damaging(0.996) TCGA-60-2726-01 8 35425673 35425673 A T UNC5D Missense_Mutation p.H127L 0.24 deleterious(0.02) probably_damaging(0.986) TCGA-60-2726-01 8 38162108 38162108 T A WHSC1L1 Nonsense_Mutation p.R870* 0.26 TCGA-60-2726-01 8 38808484 38808484 G T PLEKHA2 Silent p.V154V 0.24 TCGA-60-2726-01 8 52320664 52320664 C G PXDNL Missense_Mutation p.E1174Q 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-60-2726-01 8 62212690 62212690 C A CLVS1 Missense_Mutation p.Q102K 0.11 tolerated(0.34) benign(0.119) TCGA-60-2726-01 8 62366774 62366774 C T CLVS1 Silent p.L235L 0.10 TCGA-60-2726-01 8 68397018 68397018 G C CPA6 Missense_Mutation p.L215V 0.13 tolerated(0.09) benign(0.139) TCGA-60-2726-01 8 70594546 70594546 G C SLCO5A1 Missense_Mutation p.T552R 0.11 deleterious(0) probably_damaging(0.944) TCGA-60-2726-01 8 75262630 75262630 G C GDAP1 5'UTR 0.19 TCGA-60-2726-01 8 86027432 86027432 A G LRRCC1 Silent p.S214S 0.53 TCGA-60-2726-01 8 95164230 95164230 C A CDH17 Silent p.T554T 0.16 TCGA-60-2726-01 9 103070787 103070787 T A TEX10 Missense_Mutation p.R820S 0.52 tolerated(0.06) benign(0.027) TCGA-60-2726-01 9 104432782 104432782 G T GRIN3A Silent p.R638R 0.24 TCGA-60-2726-01 9 119459950 119459950 G A TRIM32 5'UTR 0.18 TCGA-60-2726-01 9 120466662 120466662 C A TLR4 5'UTR 0.44 TCGA-60-2726-01 9 120476318 120476318 G C TLR4 Missense_Mutation p.V638L 0.21 deleterious(0.02) benign(0.076) TCGA-60-2726-01 9 136272165 136272165 T G REXO4 Missense_Mutation p.Y394S 0.35 deleterious(0) probably_damaging(1) TCGA-60-2726-01 9 136272167 136272167 C A REXO4 Silent p.L393L 0.35 TCGA-60-2726-01 9 137717708 137717708 C T COL5A1 Silent p.A1675A 0.45 TCGA-60-2726-01 9 22006222 22006222 C T CDKN2B Missense_Mutation p.V61M 0.19 tolerated(0.08) benign(0.304) TCGA-60-2726-01 9 27558492 27558492 T G C9orf72 Silent p.L284L 0.19 TCGA-60-2726-01 9 27558493 27558493 A T C9orf72 Missense_Mutation p.L284Q 0.18 deleterious(0) probably_damaging(0.996) TCGA-60-2726-01 9 27558494 27558494 G A C9orf72 Silent p.L284L 0.18 TCGA-60-2726-01 9 33255087 33255087 G A BAG1 3'UTR 0.56 TCGA-60-2726-01 9 39149959 39149959 C A CNTNAP3 Missense_Mutation p.S498I 0.24 tolerated(0.2) possibly_damaging(0.583) TCGA-60-2726-01 9 73151520 73151520 C G TRPM3 Silent p.P1491P 0.47 TCGA-60-2726-01 9 74856098 74856098 T C GDA Missense_Mutation p.L340P 0.36 deleterious(0) probably_damaging(0.999) TCGA-60-2726-01 X 110491210 110491210 G T CAPN6 Missense_Mutation p.L499M 0.38 tolerated(0.13) benign(0.001) TCGA-60-2726-01 X 122757941 122757941 A C THOC2 Silent p.V1096V 0.34 TCGA-60-2726-01 X 128722987 128722987 A G OCRL Silent p.R822R 0.45 TCGA-60-2726-01 X 140953296 140953296 C T MAGEC3 Missense_Mutation p.H55Y 0.44 deleterious_low_confidence(0.01) benign(0.043) TCGA-60-2726-01 X 142967747 142967747 C G UBE2NL 3'UTR 0.58 TCGA-60-2726-01 X 21519702 21519702 C T CNKSR2 Missense_Mutation p.T269I 0.30 deleterious(0) probably_damaging(0.999) TCGA-60-2726-01 X 30261248 30261248 T C MAGEB4 Silent p.S332S 0.60 TCGA-60-2726-01 X 37587107 37587107 A T XK Missense_Mutation p.I243F 0.67 tolerated(0.07) benign(0.009) TCGA-60-2726-01 X 54224686 54224686 A T WNK3 3'UTR 0.27 TCGA-60-2726-01 X 56591637 56591637 C T UBQLN2 Missense_Mutation p.S444L 0.25 deleterious(0) benign(0.068) TCGA-60-2726-01 X 65486440 65486440 C G HEPH Missense_Mutation p.R1189G 0.38 deleterious_low_confidence(0) possibly_damaging(0.454) TCGA-60-2726-01 Y 6115633 6115633 T C TSPY2 Missense_Mutation p.C199R 0.16 tolerated(0.1) possibly_damaging(0.449) TCGA-63-5128-01 10 105362464 105362464 T G SH3PXD2A Missense_Mutation p.E809D 0.69 tolerated(0.53) benign(0.003) TCGA-63-5128-01 10 105362496 105362496 C T SH3PXD2A Missense_Mutation p.A799T 0.62 tolerated(0.7) benign(0.004) TCGA-63-5128-01 10 120801779 120801779 C A EIF3A Missense_Mutation p.D1085Y 0.67 deleterious_low_confidence(0) benign(0.083) TCGA-63-5128-01 10 120832423 120832423 A G EIF3A Missense_Mutation p.Y174H 0.75 deleterious(0) unknown(0) TCGA-63-5128-01 10 13168002 13168002 A C OPTN Missense_Mutation p.N402T 0.33 tolerated(0.06) benign(0.06) TCGA-63-5128-01 10 14939359 14939359 C G SUV39H2 Nonsense_Mutation p.S231* 0.25 TCGA-63-5128-01 10 17432598 17432598 C A ST8SIA6 Silent p.S74S 0.58 TCGA-63-5128-01 10 17737147 17737147 G T STAM Missense_Mutation p.G212V 0.35 tolerated(0.54) benign(0.032) TCGA-63-5128-01 10 24908835 24908835 C A ARHGAP21 Missense_Mutation p.Q663H 0.55 tolerated(0.14) benign(0.018) TCGA-63-5128-01 10 28233794 28233794 C A ARMC4 Missense_Mutation p.G495V 0.66 deleterious(0.01) probably_damaging(0.962) TCGA-63-5128-01 10 55582571 55582571 T C PCDH15 Missense_Mutation p.I1641V 0.39 tolerated_low_confidence(0.86) benign(0.019) TCGA-63-5128-01 10 7326102 7326102 C A SFMBT2 Missense_Mutation p.G179V 0.59 deleterious(0) probably_damaging(1) TCGA-63-5128-01 10 7326103 7326103 C A SFMBT2 Missense_Mutation p.G179W 0.60 deleterious(0) probably_damaging(1) TCGA-63-5128-01 10 86131058 86131058 A G CCSER2 Missense_Mutation p.N84D 0.76 tolerated(0.48) benign(0.002) TCGA-63-5128-01 10 96066240 96066240 A T PLCE1 Missense_Mutation p.E1893D 0.67 deleterious(0) probably_damaging(0.999) TCGA-63-5128-01 10 99093814 99093814 G A FRAT2 Silent p.D172D 0.73 TCGA-63-5128-01 10 99677372 99677372 G C CRTAC1 Nonsense_Mutation p.Y200* 0.72 TCGA-63-5128-01 11 1023947 1023947 G T MUC6 Missense_Mutation p.P1128T 0.25 unknown(0) TCGA-63-5128-01 11 103780489 103780489 A G PDGFD Missense_Mutation p.L349P 0.28 deleterious(0) probably_damaging(0.981) TCGA-63-5128-01 11 106681206 106681206 T C GUCY1A2 Splice_Site p.X403_splice 0.48 TCGA-63-5128-01 11 111844922 111844922 C T DIXDC1 Silent p.A164A 0.64 TCGA-63-5128-01 11 119027673 119027673 G A ABCG4 Silent p.K339K 0.23 TCGA-63-5128-01 11 120996008 120996008 C T TECTA Intron 0.28 TCGA-63-5128-01 11 122738174 122738174 C G CRTAM Missense_Mutation p.T292R 0.20 deleterious(0.01) probably_damaging(0.94) TCGA-63-5128-01 11 129812419 129812419 C A PRDM10 Missense_Mutation p.A290S 0.52 deleterious(0.02) probably_damaging(0.993) TCGA-63-5128-01 11 1618924 1618924 C G KRTAP5-2 3'UTR 0.28 TCGA-63-5128-01 11 17124270 17124270 T A PIK3C2A Missense_Mutation p.M1264L 0.32 tolerated(0.37) probably_damaging(0.993) TCGA-63-5128-01 11 36057729 36057729 G A LDLRAD3 Silent p.R41R 0.21 TCGA-63-5128-01 11 40137227 40137227 T A LRRC4C Missense_Mutation p.M206L 0.21 deleterious(0.01) possibly_damaging(0.718) TCGA-63-5128-01 11 4621440 4621440 C A TRIM68 3'UTR 0.23 TCGA-63-5128-01 11 50003789 50003789 G T OR4C12 Silent p.S83S 0.55 TCGA-63-5128-01 11 5322673 5322673 G T OR51B4 Silent p.S168S 0.43 TCGA-63-5128-01 11 5537191 5537191 T A UBQLNL Missense_Mutation p.T161S 0.59 tolerated(0.37) benign(0.02) TCGA-63-5128-01 11 55579306 55579306 C G OR5L1 Missense_Mutation p.R122G 0.43 deleterious(0) possibly_damaging(0.605) TCGA-63-5128-01 11 55872567 55872567 G A OR8H2 Missense_Mutation p.G17R 0.22 deleterious(0.01) probably_damaging(1) TCGA-63-5128-01 11 55872568 55872568 G T OR8H2 Missense_Mutation p.G17V 0.22 deleterious(0) probably_damaging(1) TCGA-63-5128-01 11 56043328 56043328 T A OR5T1 Missense_Mutation p.Y72N 0.54 deleterious(0) probably_damaging(0.984) TCGA-63-5128-01 11 56043399 56043399 C A OR5T1 Silent p.V95V 0.55 TCGA-63-5128-01 11 56230873 56230873 G T OR5M9 Missense_Mutation p.P2H 0.10 tolerated(0.06) possibly_damaging(0.491) TCGA-63-5128-01 11 58190174 58190174 G A OR5B2 Silent p.C187C 0.48 TCGA-63-5128-01 11 59189883 59189883 G T OR5A2 Missense_Mutation p.L182I 0.26 tolerated(0.43) possibly_damaging(0.85) TCGA-63-5128-01 11 59245475 59245475 C T OR4D10 Silent p.D191D 0.59 TCGA-63-5128-01 11 5969309 5969309 T C OR56A3 Missense_Mutation p.C245R 0.21 deleterious(0) probably_damaging(1) TCGA-63-5128-01 11 61511438 61511438 G C DAGLA Missense_Mutation p.R869P 0.32 tolerated_low_confidence(0.06) benign(0.001) TCGA-63-5128-01 11 6191170 6191170 A G OR52B2 Silent p.C129C 0.23 TCGA-63-5128-01 11 62749403 62749403 G A SLC22A6 Silent p.L236L 0.53 TCGA-63-5128-01 11 66472375 66472375 G A SPTBN2 Missense_Mutation p.A791V 0.24 deleterious(0.03) benign(0.174) TCGA-63-5128-01 11 71850388 71850388 C G FOLR3 Intron 0.71 TCGA-63-5128-01 11 78412887 78412887 T A TENM4 Missense_Mutation p.T1591S 0.53 tolerated(0.75) benign(0.002) TCGA-63-5128-01 11 86111844 86111844 G T CCDC81 Splice_Site p.X294_splice 0.50 TCGA-63-5128-01 11 88242498 88242498 T C GRM5 Silent p.A967A 0.74 TCGA-63-5128-01 11 89537252 89537252 A G TRIM49 Missense_Mutation p.I129T 0.51 tolerated(0.15) benign(0.279) TCGA-63-5128-01 11 92526090 92526090 C A FAT3 Missense_Mutation p.A1590D 0.55 probably_damaging(1) TCGA-63-5128-01 11 94731217 94731217 C A KDM4D Silent p.A227A 0.25 TCGA-63-5128-01 11 96123813 96123813 T A JRKL 5'UTR 0.23 TCGA-63-5128-01 12 100957235 100957235 C A NR1H4 Missense_Mutation p.P477T 0.56 tolerated(0.22) probably_damaging(0.996) TCGA-63-5128-01 12 104056721 104056721 C T STAB2 Missense_Mutation p.S656F 0.54 deleterious(0) probably_damaging(0.998) TCGA-63-5128-01 12 104129294 104129294 C G STAB2 Missense_Mutation p.S1829C 0.26 tolerated(0.18) possibly_damaging(0.739) TCGA-63-5128-01 12 105445870 105445870 A G ALDH1L2 Silent p.Y511Y 0.22 TCGA-63-5128-01 12 106633568 106633568 G A CKAP4 Missense_Mutation p.A348V 0.44 tolerated(0.1) possibly_damaging(0.641) TCGA-63-5128-01 12 108169080 108169080 G A ASCL4 Missense_Mutation p.G30R 0.26 tolerated(0.58) benign(0.002) TCGA-63-5128-01 12 108985233 108985233 C T TMEM119 3'UTR 0.54 TCGA-63-5128-01 12 10961715 10961715 C T TAS2R9 3'UTR 0.26 TCGA-63-5128-01 12 113612523 113612523 C A DDX54 Silent p.L330L 0.30 TCGA-63-5128-01 12 122745859 122745859 G A VPS33A Silent p.L144L 0.35 TCGA-63-5128-01 12 133196330 133196330 C - P2RX2 Frame_Shift_Del p.E127Rfs*3 0.61 TCGA-63-5128-01 12 1969325 1969325 G T CACNA2D4 Missense_Mutation p.S642R 0.18 tolerated(0.39) benign(0.004) TCGA-63-5128-01 12 21445117 21445117 C T SLCO1A2 Missense_Mutation p.G531R 0.64 deleterious(0) probably_damaging(0.997) TCGA-63-5128-01 12 26217730 26217730 G A RASSF8 Missense_Mutation p.G135S 0.25 deleterious(0.02) probably_damaging(0.998) TCGA-63-5128-01 12 26217731 26217731 G C RASSF8 Missense_Mutation p.G135A 0.25 tolerated(0.14) probably_damaging(0.995) TCGA-63-5128-01 12 2676768 2676768 C T CACNA1C Missense_Mutation p.T568M 0.67 deleterious(0) probably_damaging(0.995) TCGA-63-5128-01 12 29911675 29911675 C T TMTC1 Silent p.A172A 0.61 TCGA-63-5128-01 12 33031203 33031203 C A PKP2 Missense_Mutation p.R204L 0.58 tolerated(0.72) benign(0.001) TCGA-63-5128-01 12 41333217 41333217 A G CNTN1 Missense_Mutation p.K437E 0.33 deleterious(0.01) probably_damaging(0.963) TCGA-63-5128-01 12 41900384 41900384 G T PDZRN4 Missense_Mutation p.A324S 0.21 tolerated(0.68) benign(0.005) TCGA-63-5128-01 12 42491380 42491380 C A GXYLT1 Missense_Mutation p.R342L 0.52 deleterious(0) probably_damaging(0.987) TCGA-63-5128-01 12 46245335 46245335 G A ARID2 Silent p.V1143V 0.27 TCGA-63-5128-01 12 49050461 49050461 G A KANSL2 Intron 0.26 TCGA-63-5128-01 12 53853162 53853162 G T PCBP2 Missense_Mutation p.G117V 0.45 deleterious(0) probably_damaging(0.998) TCGA-63-5128-01 12 62147453 62147453 C A FAM19A2 Missense_Mutation p.D112Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-63-5128-01 12 76767136 76767136 C A OSBPL8 Missense_Mutation p.L635F 0.24 deleterious(0) probably_damaging(0.993) TCGA-63-5128-01 12 78444708 78444708 G T NAV3 Missense_Mutation p.S766I 0.18 deleterious(0.02) benign(0.419) TCGA-63-5128-01 12 85517965 85517965 A T LRRIQ1 Missense_Mutation p.K1225N 0.21 deleterious(0.02) benign(0.164) TCGA-63-5128-01 13 20987499 20987499 C A CRYL1 Missense_Mutation p.D221Y 0.74 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-63-5128-01 13 42871185 42871185 A G AKAP11 Missense_Mutation p.D73G 0.69 tolerated(0.07) benign(0.14) TCGA-63-5128-01 13 77644818 77644818 T G MYCBP2 Missense_Mutation p.H3913P 0.71 probably_damaging(0.974) TCGA-63-5128-01 13 97484966 97484966 G C HS6ST3 Missense_Mutation p.Q310H 0.78 deleterious(0) probably_damaging(0.999) TCGA-63-5128-01 14 106173880 106173880 C A IGHA1 Missense_Mutation p.E229D 0.64 deleterious(0.03) benign(0.135) TCGA-63-5128-01 14 20295781 20295781 C A OR4N2 Silent p.P58P 0.32 TCGA-63-5128-01 14 20345187 20345187 G T OR4K2 Missense_Mutation p.C254F 0.40 deleterious(0.01) possibly_damaging(0.776) TCGA-63-5128-01 14 23896042 23896042 C - MYH7 Frame_Shift_Del p.R663Pfs*21 0.41 TCGA-63-5128-01 14 24045142 24045142 G T JPH4 Missense_Mutation p.N301K 0.85 tolerated(0.11) possibly_damaging(0.719) TCGA-63-5128-01 14 52194781 52194781 C T FRMD6 3'UTR 0.70 TCGA-63-5128-01 14 53619450 53619450 G A DDHD1 Missense_Mutation p.P123S 0.85 deleterious_low_confidence(0.04) benign(0.001) TCGA-63-5128-01 14 64988813 64988813 C T ZBTB1 Silent p.S197S 0.70 TCGA-63-5128-01 14 94004430 94004430 G T UNC79 Missense_Mutation p.R229S 0.80 tolerated(0.05) probably_damaging(0.995) TCGA-63-5128-01 14 95033468 95033468 A C SERPINA4 Missense_Mutation p.K271Q 0.86 tolerated(0.35) benign(0.144) TCGA-63-5128-01 15 25423790 25423790 A T SNORD115-6 5'Flank 0.48 TCGA-63-5128-01 15 25423950 25423950 G T SNORD115-5 RNA 0.36 TCGA-63-5128-01 15 34105704 34105704 C T RYR3 Missense_Mutation p.H3476Y 0.37 benign(0.392) TCGA-63-5128-01 15 43044805 43044805 T A TTBK2 Missense_Mutation p.K880M 0.36 deleterious_low_confidence(0.03) possibly_damaging(0.503) TCGA-63-5128-01 15 51689784 51689784 G T GLDN Missense_Mutation p.G269V 0.37 tolerated(0.08) benign(0.209) TCGA-63-5128-01 15 52098653 52098653 A G TMOD2 Missense_Mutation p.Y319C 0.50 deleterious(0) probably_damaging(1) TCGA-63-5128-01 15 52538196 52538196 C G MYO5C Missense_Mutation p.V675L 0.42 deleterious(0) benign(0.134) TCGA-63-5128-01 15 55520835 55520835 T C RAB27A Silent p.Q105Q 0.40 TCGA-63-5128-01 15 56152937 56152937 C A NEDD4 Silent p.L585L 0.46 TCGA-63-5128-01 15 67950889 67950889 A T MAP2K5 Splice_Site p.X246_splice 0.39 TCGA-63-5128-01 15 69238414 69238414 G T SPESP1 Missense_Mutation p.V181F 0.36 tolerated(0.3) benign(0.027) TCGA-63-5128-01 15 75012665 75012665 C A CYP1A1 3'UTR 0.36 TCGA-63-5128-01 15 79291169 79291169 T A RASGRF1 Splice_Site p.X932_splice 0.44 TCGA-63-5128-01 15 86791071 86791071 G - AGBL1 Frame_Shift_Del p.A187Qfs*32 0.36 TCGA-63-5128-01 15 87097716 87097716 G C AGBL1 Missense_Mutation p.R935T 0.41 deleterious(0) possibly_damaging(0.854) TCGA-63-5128-01 16 27357843 27357843 G T IL4R Silent p.L139L 0.74 TCGA-63-5128-01 16 31341848 31341848 C A ITGAM Silent p.I1067I 0.80 TCGA-63-5128-01 16 3139746 3139746 C T ZSCAN10 Silent p.S508S 0.75 TCGA-63-5128-01 16 31926523 31926523 A T ZNF267 Missense_Mutation p.E318V 0.75 deleterious(0) benign(0.021) TCGA-63-5128-01 16 57095391 57095391 G A NLRC5 Missense_Mutation p.V1340M 0.58 tolerated(0.27) benign(0.14) TCGA-63-5128-01 16 81965179 81965179 G T PLCG2 Nonsense_Mutation p.E887* 0.75 TCGA-63-5128-01 17 10428555 10428555 A T MYH2 Missense_Mutation p.L1550I 0.38 deleterious(0.01) probably_damaging(1) TCGA-63-5128-01 17 10443325 10443325 G T MYH2 Missense_Mutation p.T356K 0.38 deleterious(0) probably_damaging(0.965) TCGA-63-5128-01 17 17078674 17078674 G T MPRIP Missense_Mutation p.G886V 0.34 tolerated(0.06) benign(0.127) TCGA-63-5128-01 17 18205961 18205961 G C TOP3A Missense_Mutation p.N192K 0.23 deleterious(0.01) possibly_damaging(0.616) TCGA-63-5128-01 17 37455251 37455251 A T FBXL20 Missense_Mutation p.N107K 0.17 tolerated(0.29) benign(0.001) TCGA-63-5128-01 17 44770377 44770377 A T NSF Missense_Mutation p.N352Y 0.29 deleterious(0) probably_damaging(0.998) TCGA-63-5128-01 17 45569813 45569813 T C MRPL45P2 RNA 0.21 TCGA-63-5128-01 17 55027261 55027261 T C COIL Missense_Mutation p.T448A 0.55 tolerated(0.12) possibly_damaging(0.758) TCGA-63-5128-01 17 7138884 7138884 C A PHF23 3'UTR 0.53 TCGA-63-5128-01 17 72469855 72469855 G A CD300A Missense_Mutation p.R74Q 0.50 deleterious(0.01) possibly_damaging(0.803) TCGA-63-5128-01 17 7576878 7576888 AGTGGTTTCTT C TP53 Frame_Shift_Del p.K320Gfs*22 0.64 TCGA-63-5128-01 17 7576888 7576888 T C TP53 Missense_Mutation p.K320E 0.62 tolerated(0.09) possibly_damaging(0.513) TCGA-63-5128-01 17 7752382 7752382 G A KDM6B Missense_Mutation p.E926K 0.16 possibly_damaging(0.801) TCGA-63-5128-01 18 14542920 14542920 C G POTEC Missense_Mutation p.G76R 0.33 deleterious_low_confidence(0.05) probably_damaging(0.974) TCGA-63-5128-01 18 22805045 22805045 C G ZNF521 Missense_Mutation p.R946P 0.48 deleterious(0.01) probably_damaging(0.998) TCGA-63-5128-01 18 22805047 22805047 G A ZNF521 Silent p.L945L 0.47 TCGA-63-5128-01 18 45374941 45374941 C A SMAD2 Missense_Mutation p.G301V 0.31 deleterious(0) probably_damaging(0.992) TCGA-63-5128-01 18 77798604 77798604 G A RBFA Missense_Mutation p.A160T 0.72 tolerated(0.05) possibly_damaging(0.8) TCGA-63-5128-01 19 1081695 1081695 G C HMHA1 Missense_Mutation p.K795N 0.28 deleterious(0) possibly_damaging(0.894) TCGA-63-5128-01 19 12188124 12188124 A G ZNF844 3'UTR 0.61 TCGA-63-5128-01 19 12976218 12976218 T C MAST1 Missense_Mutation p.I576T 0.61 deleterious(0.01) probably_damaging(0.982) TCGA-63-5128-01 19 15273333 15273333 C T NOTCH3 Silent p.V1952V 0.52 TCGA-63-5128-01 19 17013536 17013536 C A CPAMD8 Missense_Mutation p.W1583C 0.34 tolerated(0.18) benign(0.446) TCGA-63-5128-01 19 17369130 17369130 C T USHBP1 Missense_Mutation p.D371N 0.39 tolerated(0.43) benign(0.001) TCGA-63-5128-01 19 18507223 18507223 G C LRRC25 Missense_Mutation p.P184R 0.45 deleterious(0.04) probably_damaging(0.972) TCGA-63-5128-01 19 21719898 21719898 A C ZNF429 Missense_Mutation p.K348T 0.24 deleterious(0) probably_damaging(1) TCGA-63-5128-01 19 36223655 36223655 G C KMT2B Missense_Mutation p.D2069H 0.36 probably_damaging(0.99) TCGA-63-5128-01 19 42819206 42819206 G T TMEM145 Missense_Mutation p.R161L 0.30 deleterious(0.05) benign(0.209) TCGA-63-5128-01 19 46351143 46351143 G A SYMPK Silent p.T181T 0.36 TCGA-63-5128-01 19 50918710 50918710 G T POLD1 Silent p.A860A 0.50 TCGA-63-5128-01 19 51771922 51771922 G A SIGLECL1 3'UTR 0.49 TCGA-63-5128-01 19 53036196 53036196 G A ZNF808 5'UTR 0.46 TCGA-63-5128-01 19 53668521 53668521 C T ZNF665 Missense_Mutation p.V408I 0.17 deleterious(0) benign(0.003) TCGA-63-5128-01 19 54663953 54663953 G C TMC4 3'UTR 0.31 TCGA-63-5128-01 19 55019392 55019392 G C LAIR2 Silent p.L119L 0.38 TCGA-63-5128-01 19 56952492 56952492 G T ZNF667 3'UTR 0.44 TCGA-63-5128-01 19 58485832 58485832 G C C19orf18 5'UTR 0.13 TCGA-63-5128-01 19 58639614 58639614 C T ZNF329 Silent p.R419R 0.21 TCGA-63-5128-01 19 6429775 6429775 A T SLC25A41 Missense_Mutation p.L195Q 0.72 deleterious(0) probably_damaging(0.974) TCGA-63-5128-01 19 8174596 8174596 C T FBN3 Missense_Mutation p.V1459M 0.75 tolerated(0.07) benign(0.045) TCGA-63-5128-01 1 101704795 101704795 C A S1PR1 Silent p.G85G 0.61 TCGA-63-5128-01 1 11766322 11766322 G - DRAXIN Frame_Shift_Del p.P4Lfs*19 0.32 TCGA-63-5128-01 1 119964499 119964499 A G HSD3B2 Missense_Mutation p.I125M 0.80 deleterious(0.02) benign(0.089) TCGA-63-5128-01 1 14113199 14113199 G T PRDM2 Intron 0.70 TCGA-63-5128-01 1 151751235 151751235 G A TDRKH Missense_Mutation p.S270F 0.37 deleterious(0) benign(0.024) TCGA-63-5128-01 1 158631100 158631100 C T SPTA1 Missense_Mutation p.R855K 0.36 tolerated(0.92) benign(0.039) TCGA-63-5128-01 1 159043275 159043275 G T AIM2 Nonsense_Mutation p.Y5* 0.40 TCGA-63-5128-01 1 160261286 160261286 T C COPA Missense_Mutation p.M1096V 0.42 deleterious(0.03) benign(0.029) TCGA-63-5128-01 1 16748579 16748579 C T SPATA21 Intron 0.79 TCGA-63-5128-01 1 168698149 168698149 C G DPT Silent p.T88T 0.29 TCGA-63-5128-01 1 171509342 171509342 C T PRRC2C Missense_Mutation p.R911W 0.37 unknown(0) TCGA-63-5128-01 1 175048524 175048524 C A TNN Nonsense_Mutation p.C155* 0.55 TCGA-63-5128-01 1 196205139 196205139 G A KCNT2 Silent p.T1091T 0.38 TCGA-63-5128-01 1 196953257 196953257 C T CFHR5 Silent p.C140C 0.33 TCGA-63-5128-01 1 201187690 201187690 G A IGFN1 Missense_Mutation p.G3268S 0.31 probably_damaging(1) TCGA-63-5128-01 1 213415226 213415226 G C RPS6KC1 Missense_Mutation p.G803R 0.37 tolerated(0.1) benign(0.02) TCGA-63-5128-01 1 214830428 214830428 A G CENPF Missense_Mutation p.M2880V 0.39 benign(0.07) TCGA-63-5128-01 1 215824074 215824074 G T USH2A Missense_Mutation p.P4735T 0.38 probably_damaging(1) TCGA-63-5128-01 1 226176080 226176080 C G SDE2 Missense_Mutation p.M217I 0.38 tolerated(0.1) benign(0.071) TCGA-63-5128-01 1 236902788 236902788 A T ACTN2 Missense_Mutation p.S355C 0.34 deleterious(0.02) probably_damaging(0.955) TCGA-63-5128-01 1 236902789 236902789 G T ACTN2 Missense_Mutation p.S355I 0.35 tolerated(0.07) possibly_damaging(0.535) TCGA-63-5128-01 1 237995872 237995872 G T RYR2 Missense_Mutation p.M4943I 0.36 benign(0.001) TCGA-63-5128-01 1 247752419 247752419 T A OR2G2 Missense_Mutation p.I253N 0.43 deleterious(0) probably_damaging(0.981) TCGA-63-5128-01 1 248262842 248262842 C A OR2L13 Missense_Mutation p.H55Q 0.37 deleterious(0.01) benign(0.089) TCGA-63-5128-01 1 248436680 248436680 C A OR2T33 Missense_Mutation p.C146F 0.21 deleterious(0) benign(0.279) TCGA-63-5128-01 1 27100389 27100389 G A ARID1A Silent p.Q1367Q 0.69 TCGA-63-5128-01 1 3800204 3800204 T A DFFB Missense_Mutation p.C306S 0.75 deleterious(0) probably_damaging(1) TCGA-63-5128-01 1 44070953 44070953 G T PTPRF Silent p.V1076V 0.74 TCGA-63-5128-01 1 67816672 67816672 C T IL12RB2 Silent p.V386V 0.77 TCGA-63-5128-01 1 75038477 75038477 C A C1orf173 Missense_Mutation p.A973S 0.72 deleterious(0.04) probably_damaging(0.953) TCGA-63-5128-01 1 91979565 91979565 C T CDC7 Missense_Mutation p.H295Y 0.68 tolerated(1) benign(0.002) TCGA-63-5128-01 20 2384444 2384444 C A TGM6 Silent p.I437I 0.39 TCGA-63-5128-01 20 30156082 30156082 A C HM13 Intron 0.75 TCGA-63-5128-01 20 36975018 36975018 G T LBP Missense_Mutation p.R33S 0.75 deleterious(0) probably_damaging(0.994) TCGA-63-5128-01 20 36989421 36989421 G T LBP Missense_Mutation p.V218F 0.73 deleterious(0) possibly_damaging(0.882) TCGA-63-5128-01 20 47886767 47886775 CCTCCTGGA - ZNFX1 In_Frame_Del p.V525_E527del 0.54 TCGA-63-5128-01 21 11049551 11049551 A T BAGE2 RNA 0.06 TCGA-63-5128-01 22 22712342 22712342 G A IGLV1-47 Missense_Mutation p.A29T 0.35 tolerated_low_confidence(0.08) benign(0.019) TCGA-63-5128-01 22 22735700 22735700 G A IGLV1-44 Missense_Mutation p.D113N 0.38 tolerated_low_confidence(0.23) benign(0.002) TCGA-63-5128-01 22 22989255 22989255 G T GGTLC2 Nonsense_Mutation p.E70* 0.40 TCGA-63-5128-01 22 37163876 37163876 G C IFT27 Missense_Mutation p.A22G 0.33 deleterious(0) possibly_damaging(0.515) TCGA-63-5128-01 22 37770143 37770143 C A ELFN2 Missense_Mutation p.G478W 0.42 deleterious(0) probably_damaging(0.998) TCGA-63-5128-01 22 38109217 38109217 G C TRIOBP Missense_Mutation p.R85S 0.49 tolerated_low_confidence(0.32) benign(0.092) TCGA-63-5128-01 22 39496312 39496312 G T APOBEC3H Missense_Mutation p.R10L 0.36 tolerated(0.64) benign(0.005) TCGA-63-5128-01 22 40415247 40415247 C A FAM83F Silent p.R189R 0.36 TCGA-63-5128-01 22 50483723 50483723 T A TTLL8 Missense_Mutation p.R238W 0.44 tolerated(0.06) possibly_damaging(0.781) TCGA-63-5128-01 2 103013161 103013161 G A IL18R1 Missense_Mutation p.D481N 0.36 tolerated(0.17) benign(0.198) TCGA-63-5128-01 2 125281944 125281944 G - CNTNAP5 Frame_Shift_Del p.L464Sfs*40 0.36 TCGA-63-5128-01 2 128913101 128913101 T G UGGT1 Missense_Mutation p.L726V 0.35 deleterious(0.01) probably_damaging(0.965) TCGA-63-5128-01 2 130872857 130872857 A G POTEF Missense_Mutation p.V189A 0.16 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-63-5128-01 2 136107557 136107557 T G ZRANB3 Missense_Mutation p.E196D 0.28 deleterious(0.03) probably_damaging(0.991) TCGA-63-5128-01 2 137814087 137814087 T A THSD7B Silent p.S79S 0.22 TCGA-63-5128-01 2 152420154 152420154 A G NEB Missense_Mutation p.V6220A 0.48 possibly_damaging(0.627) TCGA-63-5128-01 2 166606403 166606403 T C GALNT3 Missense_Mutation p.Y543C 0.47 deleterious(0) probably_damaging(1) TCGA-63-5128-01 2 170387868 170387868 G T FASTKD1 Missense_Mutation p.A774D 0.48 deleterious(0) possibly_damaging(0.494) TCGA-63-5128-01 2 170502594 170502594 C T CCDC173 Silent p.Q472Q 0.51 TCGA-63-5128-01 2 172216976 172216976 T C METTL8 Missense_Mutation p.K64R 0.41 tolerated(0.1) benign(0.033) TCGA-63-5128-01 2 176957927 176957927 A C HOXD13 Silent p.P103P 0.53 TCGA-63-5128-01 2 179437986 179437986 A G TTN Silent p.H24291H 0.58 TCGA-63-5128-01 2 179451955 179451955 G C TTN Missense_Mutation p.T21328S 0.28 TCGA-63-5128-01 2 179469006 179469006 C G TTN Missense_Mutation p.Q18136H 0.38 TCGA-63-5128-01 2 179592314 179592314 G T TTN Missense_Mutation p.T6664K 0.21 TCGA-63-5128-01 2 201342791 201342791 G C SPATS2L 3'UTR 0.63 TCGA-63-5128-01 2 209189668 209189668 G T PIKFYVE Missense_Mutation p.G789C 0.76 deleterious(0) probably_damaging(0.998) TCGA-63-5128-01 2 228882367 228882367 C A SPHKAP Missense_Mutation p.R1068L 0.79 deleterious(0) probably_damaging(1) TCGA-63-5128-01 2 231035425 231035425 T G SP110 Missense_Mutation p.K647T 0.74 deleterious(0) possibly_damaging(0.607) TCGA-63-5128-01 2 241515987 241515989 CCG - RNPEPL1 In_Frame_Del p.P286del 0.77 TCGA-63-5128-01 2 33623484 33623484 A G LTBP1 Missense_Mutation p.K1680E 0.27 tolerated(0.06) benign(0.344) TCGA-63-5128-01 2 37032769 37032769 G T VIT Nonsense_Mutation p.E451* 0.62 TCGA-63-5128-01 2 40405579 40405579 G A SLC8A1 Silent p.T621T 0.45 TCGA-63-5128-01 2 42578481 42578481 C T COX7A2L Missense_Mutation p.V75I 0.33 tolerated(0.46) benign(0.003) TCGA-63-5128-01 2 44549036 44549036 T C PREPL Missense_Mutation p.Y675C 0.21 tolerated(0.06) probably_damaging(0.95) TCGA-63-5128-01 2 63609192 63609192 G T WDPCP Silent p.I491I 0.49 TCGA-63-5128-01 2 66670133 66670133 A G MEIS1 Missense_Mutation p.K195E 0.48 tolerated(0.13) benign(0.284) TCGA-63-5128-01 2 73145400 73145400 C T EMX1 Missense_Mutation p.P140L 0.42 tolerated(0.31) benign(0.026) TCGA-63-5128-01 2 73466917 73466917 T C CCT7 Silent p.D51D 0.26 TCGA-63-5128-01 2 73678938 73678938 A - ALMS1 Frame_Shift_Del p.T1761Qfs*17 0.36 TCGA-63-5128-01 2 74136206 74136206 C G ACTG2 Missense_Mutation p.P131A 0.23 deleterious_low_confidence(0.01) benign(0.354) TCGA-63-5128-01 2 89265862 89265862 G T IGKV1-6 Silent p.G90G 0.47 TCGA-63-5128-01 3 101370029 101370029 T C ZBTB11 Missense_Mutation p.H1048R 0.55 deleterious_low_confidence(0) possibly_damaging(0.743) TCGA-63-5128-01 3 109128889 109128889 G T RP11-702L6.4 RNA 0.28 TCGA-63-5128-01 3 120130804 120130804 C A FSTL1 Silent p.V65V 0.20 TCGA-63-5128-01 3 122003495 122003495 G T CASR Silent p.R908R 0.37 TCGA-63-5128-01 3 126915570 126915570 C A C3orf56 Silent p.V14V 0.19 TCGA-63-5128-01 3 126915571 126915571 C A C3orf56 Missense_Mutation p.R15S 0.20 tolerated_low_confidence(0.76) possibly_damaging(0.555) TCGA-63-5128-01 3 127399246 127399246 C T ABTB1 Silent p.S455S 0.24 TCGA-63-5128-01 3 130174460 130174460 T G COL6A5 Missense_Mutation p.I2247S 0.24 tolerated(0.59) benign(0.003) TCGA-63-5128-01 3 153870603 153870603 A T ARHGEF26 Missense_Mutation p.S457C 0.33 deleterious(0) probably_damaging(1) TCGA-63-5128-01 3 155485402 155485402 C G C3orf33 Missense_Mutation p.G84R 0.31 deleterious(0) probably_damaging(0.998) TCGA-63-5128-01 3 164785163 164785163 G T SI Missense_Mutation p.S200R 0.58 deleterious(0.02) benign(0.36) TCGA-63-5128-01 3 169558000 169558000 C A LRRC31 Missense_Mutation p.V477L 0.49 tolerated(1) benign(0.013) TCGA-63-5128-01 3 186572425 186572425 G T ADIPOQ Nonsense_Mutation p.G223* 0.30 TCGA-63-5128-01 3 186959278 186959278 A C MASP1 Missense_Mutation p.C432G 0.26 deleterious(0.01) probably_damaging(0.995) TCGA-63-5128-01 3 196547330 196547330 G T PAK2 Silent p.V414V 0.24 TCGA-63-5128-01 3 197707242 197707242 G T LMLN Missense_Mutation p.G199C 0.13 deleterious(0) probably_damaging(0.978) TCGA-63-5128-01 3 38639337 38639337 C A SCN5A Missense_Mutation p.M715I 0.84 deleterious(0) benign(0.019) TCGA-63-5128-01 3 38740054 38740054 C A SCN10A Splice_Site p.X1553_splice 0.74 TCGA-63-5128-01 3 39229920 39229920 A G XIRP1 Silent p.G339G 0.80 TCGA-63-5128-01 3 41746590 41746590 T C ULK4 Missense_Mutation p.I914V 0.76 tolerated(0.66) benign(0.006) TCGA-63-5128-01 3 44938287 44938287 G T TGM4 Silent p.V212V 0.04 TCGA-63-5128-01 3 62739269 62739269 G T CADPS Nonsense_Mutation p.Y245* 0.75 TCGA-63-5128-01 3 65342327 65342327 C T MAGI1 Missense_Mutation p.R1372Q 0.73 tolerated(0.34) unknown(0) TCGA-63-5128-01 3 88040764 88040764 C A HTR1F Silent p.R289R 0.26 TCGA-63-5128-01 3 98188508 98188508 G A OR5K1 Missense_Mutation p.V30M 0.56 tolerated(0.06) benign(0.014) TCGA-63-5128-01 4 104095953 104095953 T A CENPE Missense_Mutation p.K529N 0.83 probably_damaging(0.991) TCGA-63-5128-01 4 114251625 114251625 G C ANK2 Missense_Mutation p.G1042R 0.66 probably_damaging(0.997) TCGA-63-5128-01 4 121742365 121742365 C T PRDM5 Missense_Mutation p.V146I 0.73 tolerated(0.42) benign(0.001) TCGA-63-5128-01 4 134072775 134072775 G T PCDH10 Missense_Mutation p.A494S 0.78 deleterious(0.02) possibly_damaging(0.46) TCGA-63-5128-01 4 134111451 134111451 T G PCDH10 3'UTR 0.67 TCGA-63-5128-01 4 134111452 134111452 C T PCDH10 3'UTR 0.60 TCGA-63-5128-01 4 22820373 22820373 G A GBA3 Missense_Mutation p.V413I 0.68 tolerated(0.07) benign(0.002) TCGA-63-5128-01 4 2695363 2695363 G C FAM193A Missense_Mutation p.A661P 0.61 deleterious(0.01) possibly_damaging(0.504) TCGA-63-5128-01 4 44449871 44449871 G A KCTD8 Nonsense_Mutation p.Q224* 0.22 TCGA-63-5128-01 4 55961023 55961023 C A KDR Missense_Mutation p.A973S 0.71 tolerated(0.5) benign(0.206) TCGA-63-5128-01 4 55971008 55971008 C G KDR Missense_Mutation p.E597Q 0.63 tolerated(0.28) benign(0.128) TCGA-63-5128-01 4 66197605 66197605 G T EPHA5 Intron 0.71 TCGA-63-5128-01 4 90856890 90856890 A G MMRN1 Missense_Mutation p.S687G 0.69 tolerated(0.37) benign(0.004) TCGA-63-5128-01 5 115336855 115336855 C T AQPEP Missense_Mutation p.T580I 0.71 deleterious(0) probably_damaging(0.925) TCGA-63-5128-01 5 121488879 121488879 A T ZNF474 3'UTR 0.12 TCGA-63-5128-01 5 131953812 131953812 A G RAD50 Missense_Mutation p.N1072S 0.74 tolerated(1) benign(0) TCGA-63-5128-01 5 137206683 137206683 G T MYOT Missense_Mutation p.A115S 0.82 tolerated(1) benign(0) TCGA-63-5128-01 5 137680742 137680742 C T FAM53C Missense_Mutation p.S122L 0.75 deleterious(0) benign(0.025) TCGA-63-5128-01 5 143338 143338 G C PLEKHG4B Missense_Mutation p.E196Q 0.43 deleterious(0.01) probably_damaging(0.947) TCGA-63-5128-01 5 23527059 23527059 C G PRDM9 Nonsense_Mutation p.S621* 0.19 TCGA-63-5128-01 5 23527143 23527143 C G PRDM9 Nonsense_Mutation p.S649* 0.29 TCGA-63-5128-01 5 2749065 2749065 C A IRX2 Missense_Mutation p.G253C 0.41 deleterious(0.01) probably_damaging(1) TCGA-63-5128-01 5 33964051 33964051 C A SLC45A2 Missense_Mutation p.L211F 0.33 tolerated(0.65) benign(0.12) TCGA-63-5128-01 5 35065413 35065413 C A PRLR Silent p.V549V 0.36 TCGA-63-5128-01 5 40934464 40934464 G A C7 Missense_Mutation p.G59E 0.43 deleterious(0.04) probably_damaging(0.998) TCGA-63-5128-01 5 45267199 45267199 T C HCN1 Missense_Mutation p.D592G 0.33 deleterious(0.02) probably_damaging(0.982) TCGA-63-5128-01 5 483533 483533 T A SLC9A3 Missense_Mutation p.T333S 0.56 deleterious(0.04) probably_damaging(0.947) TCGA-63-5128-01 5 56177701 56177701 A T MAP3K1 Missense_Mutation p.N892Y 0.69 deleterious_low_confidence(0) benign(0.425) TCGA-63-5128-01 5 58571316 58571316 T C PDE4D Intron 0.80 TCGA-63-5128-01 5 74135988 74135988 C A FAM169A Missense_Mutation p.S48I 0.76 deleterious(0.02) possibly_damaging(0.586) TCGA-63-5128-01 5 76129066 76129066 G T F2RL1 Missense_Mutation p.V212L 0.75 tolerated(0.28) benign(0.025) TCGA-63-5128-01 5 82817619 82817619 T A VCAN Missense_Mutation p.M1165K 0.67 deleterious(0.04) benign(0.05) TCGA-63-5128-01 6 101054691 101054691 C A ASCC3 Missense_Mutation p.A1657S 0.33 deleterious(0) probably_damaging(0.999) TCGA-63-5128-01 6 110620282 110620282 G A METTL24 Missense_Mutation p.P210L 0.27 deleterious(0.01) probably_damaging(1) TCGA-63-5128-01 6 112462046 112462046 C A LAMA4 Silent p.G964G 0.36 TCGA-63-5128-01 6 128134125 128134125 G T THEMIS Missense_Mutation p.P554Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-63-5128-01 6 129635857 129635857 G T LAMA2 Missense_Mutation p.A1157S 0.38 deleterious(0.04) possibly_damaging(0.472) TCGA-63-5128-01 6 131216113 131216113 C T EPB41L2 Silent p.P461P 0.23 TCGA-63-5128-01 6 133045946 133045946 T C VNN3 3'UTR 0.34 TCGA-63-5128-01 6 149854712 149854712 T A PPIL4 Splice_Site p.X188_splice 0.29 TCGA-63-5128-01 6 24576630 24576630 C G KIAA0319 Missense_Mutation p.G567A 0.25 tolerated(0.06) benign(0.042) TCGA-63-5128-01 6 26468571 26468571 G A BTN2A1 Missense_Mutation p.D460N 0.38 deleterious(0.02) probably_damaging(1) TCGA-63-5128-01 6 31914294 31914294 C G CFB Missense_Mutation p.P572R 0.46 deleterious(0) probably_damaging(1) TCGA-63-5128-01 6 32039771 32039771 C G TNXB Missense_Mutation p.K1662N 0.30 probably_damaging(0.991) TCGA-63-5128-01 6 32713677 32713677 G C HLA-DQA2 Missense_Mutation p.W147C 0.28 deleterious(0) probably_damaging(1) TCGA-63-5128-01 6 32820923 32820923 C G TAP1 Missense_Mutation p.G224A 0.44 tolerated(0.29) benign(0.004) TCGA-63-5128-01 6 33424010 33424010 C T ZBTB9 Missense_Mutation p.P378L 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-63-5128-01 6 34004042 34004042 C A GRM4 Silent p.T615T 0.29 TCGA-63-5128-01 6 34949507 34949507 A G ANKS1A Missense_Mutation p.Y159C 0.34 deleterious(0) probably_damaging(0.981) TCGA-63-5128-01 6 41908689 41908689 C T CCND3 Intron 0.41 TCGA-63-5128-01 6 42196313 42196313 C T TRERF1 Missense_Mutation p.A1125T 0.33 deleterious(0.03) possibly_damaging(0.483) TCGA-63-5128-01 6 47649007 47649007 A G GPR111 Missense_Mutation p.S238G 0.23 tolerated(0.53) benign(0.368) TCGA-63-5128-01 6 52143602 52143602 G A MCM3 Nonsense_Mutation p.Q318* 0.38 TCGA-63-5128-01 6 55216071 55216071 T A GFRAL Missense_Mutation p.C131S 0.52 deleterious(0) probably_damaging(1) TCGA-63-5128-01 6 73933461 73933461 C A KHDC1L 3'UTR 0.67 TCGA-63-5128-01 6 84913806 84913806 T C KIAA1009 Missense_Mutation p.S194G 0.23 deleterious(0) possibly_damaging(0.477) TCGA-63-5128-01 6 90411637 90411637 C T MDN1 Missense_Mutation p.M2764I 0.36 benign(0.001) TCGA-63-5128-01 7 100320735 100320735 C A EPO Silent p.A187A 0.41 TCGA-63-5128-01 7 100677408 100677408 C A MUC17 Nonsense_Mutation p.S904* 0.39 TCGA-63-5128-01 7 103159907 103159907 G A RELN Silent p.I2575I 0.38 TCGA-63-5128-01 7 103293015 103293015 C A RELN Silent p.T582T 0.37 TCGA-63-5128-01 7 10973126 10973126 T C NDUFA4 3'UTR 0.30 TCGA-63-5128-01 7 122635423 122635423 T C TAS2R16 Missense_Mutation p.N89S 0.49 deleterious(0) probably_damaging(0.996) TCGA-63-5128-01 7 123136930 123136930 A G IQUB Missense_Mutation p.W352R 0.43 deleterious(0) probably_damaging(0.992) TCGA-63-5128-01 7 123517097 123517097 A C HYAL4 Missense_Mutation p.D445A 0.39 tolerated(0.42) benign(0.293) TCGA-63-5128-01 7 127338939 127338939 G T SND1 Silent p.G120G 0.40 TCGA-63-5128-01 7 137082134 137082134 T A DGKI Silent p.A990A 0.42 TCGA-63-5128-01 7 13950914 13950914 G A ETV1 Missense_Mutation p.S274F 0.26 deleterious(0) possibly_damaging(0.903) TCGA-63-5128-01 7 140373228 140373228 G A ADCK2 Missense_Mutation p.C33Y 0.43 tolerated_low_confidence(0.14) benign(0.01) TCGA-63-5128-01 7 140449164 140449164 C T BRAF Missense_Mutation p.V639I 0.44 deleterious(0) probably_damaging(0.996) TCGA-63-5128-01 7 142161955 142161955 A C TRBV6-6 Missense_Mutation p.V107G 0.39 deleterious(0) possibly_damaging(0.891) TCGA-63-5128-01 7 142180545 142180545 G A TRBV6-5 Missense_Mutation p.T105I 0.35 deleterious(0.02) probably_damaging(0.914) TCGA-63-5128-01 7 151962224 151962224 A T KMT2C Silent p.T361T 0.06 TCGA-63-5128-01 7 15652196 15652196 C A MEOX2 Missense_Mutation p.R244M 0.60 deleterious(0) probably_damaging(0.997) TCGA-63-5128-01 7 21932154 21932154 T A DNAH11 Missense_Mutation p.Y4214N 0.27 probably_damaging(0.978) TCGA-63-5128-01 7 27168614 27168614 C A HOXA4 3'UTR 0.36 TCGA-63-5128-01 7 32209441 32209441 C - PDE1C Frame_Shift_Del p.L88Ffs*11 0.27 TCGA-63-5128-01 7 40488957 40488957 G T SUGCT Missense_Mutation p.K303N 0.10 tolerated(0.19) benign(0.249) TCGA-63-5128-01 7 48315262 48315262 C T ABCA13 Missense_Mutation p.S2000L 0.12 benign(0) TCGA-63-5128-01 7 64439246 64439246 T A ZNF117 Nonsense_Mutation p.K235* 0.37 TCGA-63-5128-01 7 6737029 6737029 A C ZNF12 Missense_Mutation p.L60W 0.35 deleterious(0) probably_damaging(0.94) TCGA-63-5128-01 8 110980823 110980823 G T KCNV1 Missense_Mutation p.R333S 0.41 deleterious(0) possibly_damaging(0.705) TCGA-63-5128-01 8 125580878 125580878 T C MTSS1 Intron 0.69 TCGA-63-5128-01 8 127569686 127569686 C A FAM84B 5'UTR 0.38 TCGA-63-5128-01 8 132051619 132051619 C A ADCY8 Splice_Site p.X320_splice 0.30 TCGA-63-5128-01 8 139767743 139767743 C A COL22A1 Missense_Mutation p.E653D 0.34 unknown(0) TCGA-63-5128-01 8 140631212 140631212 G C KCNK9 Nonsense_Mutation p.Y138* 0.44 TCGA-63-5128-01 8 145755869 145755869 C G ARHGAP39 Missense_Mutation p.E1094D 0.43 deleterious(0) benign(0.384) TCGA-63-5128-01 8 146157387 146157390 CTCA - ZNF16 Frame_Shift_Del p.S261Rfs*55 0.45 TCGA-63-5128-01 8 16026001 16026001 C T MSR1 Missense_Mutation p.G199D 0.38 tolerated(0.5) benign(0.003) TCGA-63-5128-01 8 1626444 1626444 G T DLGAP2 Missense_Mutation p.G705W 0.51 deleterious(0) probably_damaging(1) TCGA-63-5128-01 8 16942784 16942784 A T MICU3 Missense_Mutation p.D245V 0.52 deleterious(0) probably_damaging(1) TCGA-63-5128-01 8 23002047 23002047 G A TNFRSF10D Silent p.V290V 0.53 TCGA-63-5128-01 8 25745433 25745433 G A EBF2 Silent p.A269A 0.24 TCGA-63-5128-01 8 49986841 49986841 A T C8orf22 Missense_Mutation p.H61L 0.28 deleterious(0.01) benign(0.124) TCGA-63-5128-01 8 53568566 53568566 A T RB1CC1 Splice_Site p.X1274_splice 0.50 TCGA-63-5128-01 8 69728119 69728119 A G C8orf34 Splice_Site p.X517_splice 0.18 TCGA-63-5128-01 8 77616927 77616927 G T ZFHX4 Missense_Mutation p.G202W 0.39 probably_damaging(0.992) TCGA-63-5128-01 8 88365891 88365891 G A CNBD1 Missense_Mutation p.G394R 0.31 deleterious(0) probably_damaging(1) TCGA-63-5128-01 8 94935592 94935592 G T PDP1 Missense_Mutation p.E460D 0.38 tolerated(0.06) benign(0.256) TCGA-63-5128-01 9 107367215 107367215 C T OR13C2 Missense_Mutation p.E232K 0.76 deleterious(0.03) benign(0.063) TCGA-63-5128-01 9 124906397 124906397 T A NDUFA8 3'UTR 0.69 TCGA-63-5128-01 9 125033303 125033303 A G MRRF Missense_Mutation p.M45V 0.76 tolerated(1) benign(0) TCGA-63-5128-01 9 137710517 137710517 G A COL5A1 Missense_Mutation p.E1416K 0.69 unknown(0) TCGA-63-5128-01 9 14722619 14722619 T A CER1 Missense_Mutation p.T18S 0.64 tolerated(0.72) benign(0.001) TCGA-63-5128-01 9 33927889 33927889 G C UBAP2 Silent p.S759S 0.60 TCGA-63-5128-01 9 7013902 7013902 G T KDM4C Nonsense_Mutation p.E695* 0.69 TCGA-63-5128-01 9 70177121 70177121 G C FOXD4L5 Missense_Mutation p.A288G 0.38 tolerated(0.33) benign(0.003) TCGA-63-5128-01 9 86421392 86421392 G A GKAP1 Missense_Mutation p.S14F 0.69 deleterious(0) probably_damaging(1) TCGA-63-5128-01 9 97063103 97063103 G T ZNF169 Missense_Mutation p.Q421H 0.62 deleterious(0.01) probably_damaging(0.982) TCGA-63-5128-01 X 105451000 105451000 G T MUM1L1 Silent p.P525P 0.80 TCGA-63-5128-01 X 117777531 117777531 G A DOCK11 Missense_Mutation p.A1458T 0.86 tolerated(0.28) probably_damaging(0.982) TCGA-63-5128-01 X 123034381 123034381 A G XIAP Missense_Mutation p.I380V 0.93 tolerated(0.11) benign(0.002) TCGA-63-5128-01 X 133699984 133699984 G A PLAC1 3'UTR 0.85 TCGA-63-5128-01 X 151123842 151123843 - C GABRE Frame_Shift_Ins p.H379Afs*6 0.41 TCGA-63-5128-01 X 153278532 153278532 C A IRAK1 Missense_Mutation p.W631L 0.40 tolerated(0.7) benign(0.013) TCGA-63-5128-01 X 21549999 21549999 G T CNKSR2 Nonsense_Mutation p.E373* 0.84 TCGA-63-5128-01 X 30236958 30236958 C G MAGEB2 Missense_Mutation p.S87R 0.90 tolerated(0.07) benign(0.006) TCGA-63-5128-01 X 48163038 48163038 C A SSX9 Splice_Site 0.77 TCGA-63-5128-01 X 64137656 64137656 C T ZC4H2 3'UTR 0.95 TCGA-63-5128-01 X 64141803 64141803 G T ZC4H2 Nonsense_Mutation p.S40* 0.88 TCGA-63-5128-01 X 65427994 65427994 T A HEPH Silent p.T877T 0.86 TCGA-63-5128-01 X 78427296 78427296 C A GPR174 Nonsense_Mutation p.C264* 0.37 TCGA-63-5128-01 X 86888827 86888827 G T KLHL4 Missense_Mutation p.W543L 0.92 deleterious(0) probably_damaging(0.982) TCGA-63-5128-01 X 86890576 86890576 G T KLHL4 Missense_Mutation p.G576C 0.78 deleterious(0) probably_damaging(1) TCGA-63-5131-01 10 103898671 103898671 A G PPRC1 Silent p.P175P 0.20 TCGA-63-5131-01 10 124457280 124457280 C A C10orf120 Missense_Mutation p.R326L 0.31 tolerated(0.64) benign(0.008) TCGA-63-5131-01 10 15648376 15648376 A C ITGA8 Missense_Mutation p.L604V 0.34 deleterious(0) possibly_damaging(0.85) TCGA-63-5131-01 10 25886839 25886839 C A GPR158 Missense_Mutation p.P762T 0.44 deleterious(0) probably_damaging(0.983) TCGA-63-5131-01 10 43090054 43090054 G A ZNF33B Missense_Mutation p.T115I 0.33 tolerated(0.26) possibly_damaging(0.556) TCGA-63-5131-01 10 45430567 45430567 C T TMEM72 Silent p.A271A 0.28 TCGA-63-5131-01 10 50732520 50732520 C G ERCC6-PGBD3 Missense_Mutation p.R319T 0.18 deleterious_low_confidence(0.05) benign(0.04) TCGA-63-5131-01 10 54074381 54074381 G T DKK1 Missense_Mutation p.A63S 0.15 tolerated(0.89) benign(0.019) TCGA-63-5131-01 10 55755368 55755368 C A PCDH15 Intron 0.42 TCGA-63-5131-01 10 64565180 64565180 C T ADO Missense_Mutation p.L121F 0.42 deleterious(0) probably_damaging(0.99) TCGA-63-5131-01 10 68686994 68686994 G T LRRTM3 Missense_Mutation p.G107V 0.40 deleterious(0) probably_damaging(1) TCGA-63-5131-01 10 71393015 71393015 G T C10orf35 3'UTR 0.55 TCGA-63-5131-01 10 75289361 75289361 G A USP54 Intron 0.22 TCGA-63-5131-01 10 85901279 85901279 G T GHITM Missense_Mutation p.C8F 0.22 deleterious(0) possibly_damaging(0.588) TCGA-63-5131-01 10 96602608 96602608 G C CYP2C19 Missense_Mutation p.E326Q 0.35 deleterious(0) probably_damaging(0.995) TCGA-63-5131-01 11 113934218 113934218 A G ZBTB16 Missense_Mutation p.N66D 0.28 tolerated(0.33) benign(0.002) TCGA-63-5131-01 11 123810646 123810646 G A OR4D5 Missense_Mutation p.G108E 0.23 deleterious(0) probably_damaging(0.999) TCGA-63-5131-01 11 124252379 124252379 G A OR8B2 Silent p.L287L 0.38 TCGA-63-5131-01 11 124749437 124749437 G T ROBO3 Missense_Mutation p.K1254N 0.40 deleterious_low_confidence(0) benign(0.425) TCGA-63-5131-01 11 126278334 126278334 A C ST3GAL4 Silent p.V190V 0.26 TCGA-63-5131-01 11 130106942 130106942 C A ZBTB44 Missense_Mutation p.R438S 0.33 deleterious(0.01) probably_damaging(0.945) TCGA-63-5131-01 11 22844604 22844604 C A SVIP 3'UTR 0.26 TCGA-63-5131-01 11 28080680 28080680 T C KIF18A Missense_Mutation p.R581G 0.33 deleterious(0) possibly_damaging(0.632) TCGA-63-5131-01 11 30033239 30033239 C A KCNA4 Missense_Mutation p.L329F 0.31 deleterious(0) probably_damaging(0.975) TCGA-63-5131-01 11 47612180 47612180 G T C1QTNF4 Missense_Mutation p.F61L 0.26 deleterious(0.05) benign(0.02) TCGA-63-5131-01 11 4968319 4968319 G T OR51A4 Silent p.I4I 0.41 TCGA-63-5131-01 11 51412301 51412301 G T OR4A5 Missense_Mutation p.T32K 0.23 deleterious_low_confidence(0) benign(0.067) TCGA-63-5131-01 11 5153430 5153430 A C OR52A5 Missense_Mutation p.L148R 0.15 deleterious(0) possibly_damaging(0.653) TCGA-63-5131-01 11 55135858 55135858 C A OR4A15 Silent p.R167R 0.23 TCGA-63-5131-01 11 55340233 55340233 C G OR4C16 Silent p.V210V 0.04 TCGA-63-5131-01 11 55541616 55541616 G T OR5D13 Missense_Mutation p.G235W 0.39 deleterious(0) probably_damaging(0.998) TCGA-63-5131-01 11 55890035 55890035 T G OR8H3 Missense_Mutation p.F63V 0.06 deleterious(0) probably_damaging(0.979) TCGA-63-5131-01 11 56310580 56310580 C A OR5M11 Missense_Mutation p.D52Y 0.25 deleterious(0) possibly_damaging(0.513) TCGA-63-5131-01 11 56409179 56409179 G T OR5AP2 Missense_Mutation p.T246N 0.25 deleterious(0) probably_damaging(1) TCGA-63-5131-01 11 57971013 57971013 A G OR1S2 Missense_Mutation p.I214T 0.30 tolerated(1) benign(0.057) TCGA-63-5131-01 11 59190101 59190101 C A OR5A2 Missense_Mutation p.G109V 0.41 tolerated(0.26) probably_damaging(1) TCGA-63-5131-01 11 6023986 6023986 G C OR56A4 Silent p.T131T 0.41 TCGA-63-5131-01 11 68204451 68204451 C T LRP5 Silent p.S1365S 0.12 TCGA-63-5131-01 11 71249616 71249616 G T KRTAP5-8 Missense_Mutation p.C172F 0.33 deleterious(0) unknown(0) TCGA-63-5131-01 11 8751741 8751741 C A ST5 Nonsense_Mutation p.G366* 0.43 TCGA-63-5131-01 11 92257851 92257851 G C FAT3 Missense_Mutation p.W1115S 0.09 probably_damaging(1) TCGA-63-5131-01 11 92715453 92715453 T A MTNR1B Missense_Mutation p.V355E 0.33 tolerated_low_confidence(1) benign(0.017) TCGA-63-5131-01 11 93529669 93529669 A G MED17 Missense_Mutation p.Y369C 0.20 deleterious(0) probably_damaging(0.956) TCGA-63-5131-01 12 111348851 111348851 C T MYL2 3'UTR 0.16 TCGA-63-5131-01 12 112174718 112174718 C T ACAD10 Missense_Mutation p.P573S 0.19 tolerated(0.11) probably_damaging(0.998) TCGA-63-5131-01 12 112184962 112184962 G A ACAD10 Missense_Mutation p.R820H 0.28 deleterious(0) benign(0.307) TCGA-63-5131-01 12 119617367 119617367 G C HSPB8 Missense_Mutation p.E84Q 0.32 tolerated(0.6) benign(0.003) TCGA-63-5131-01 12 121686468 121686468 C A CAMKK2 Nonsense_Mutation p.E465* 0.27 TCGA-63-5131-01 12 122359576 122359576 C T WDR66 Missense_Mutation p.S122L 0.29 tolerated_low_confidence(0.09) benign(0.003) TCGA-63-5131-01 12 130185224 130185224 G T TMEM132D Silent p.I33I 0.08 TCGA-63-5131-01 12 131276355 131276355 T A STX2 3'UTR 0.26 TCGA-63-5131-01 12 1895206 1895206 G A ADIPOR2 Missense_Mutation p.G377S 0.57 tolerated(0.08) possibly_damaging(0.588) TCGA-63-5131-01 12 21196275 21196275 C T SLCO1B7 Silent p.I198I 0.35 TCGA-63-5131-01 12 21472480 21472480 A C SLCO1A2 Intron 0.47 TCGA-63-5131-01 12 3782628 3782628 C A EFCAB4B Nonsense_Mutation p.E219* 0.53 TCGA-63-5131-01 12 39750664 39750664 T G KIF21A Missense_Mutation p.H480P 0.05 deleterious(0) possibly_damaging(0.856) TCGA-63-5131-01 12 41587941 41587941 G A PDZRN4 Missense_Mutation p.G265E 0.38 deleterious(0) probably_damaging(0.999) TCGA-63-5131-01 12 4479706 4479706 G A FGF23 Missense_Mutation p.R187W 0.52 tolerated(0.19) benign(0) TCGA-63-5131-01 12 4543478 4543478 T A FGF6 Missense_Mutation p.Q177L 0.17 tolerated(0.07) benign(0) TCGA-63-5131-01 12 48380194 48380194 G A COL2A1 Silent p.P484P 0.58 TCGA-63-5131-01 12 49666042 49666042 C T TUBA1C Nonsense_Mutation p.Q128* 0.18 TCGA-63-5131-01 12 50471005 50471005 C T ASIC1 Missense_Mutation p.R190C 0.13 deleterious(0) probably_damaging(0.954) TCGA-63-5131-01 12 5154520 5154520 C G KCNA5 Missense_Mutation p.R403G 0.16 deleterious(0) probably_damaging(0.999) TCGA-63-5131-01 12 51851168 51851168 A T SLC4A8 Missense_Mutation p.D203V 0.19 tolerated(0.24) benign(0.254) TCGA-63-5131-01 12 52818289 52818289 C T KRT75 3'UTR 0.20 TCGA-63-5131-01 12 53449424 53449424 G C TENC1 Missense_Mutation p.E226Q 0.22 deleterious(0) probably_damaging(0.998) TCGA-63-5131-01 12 56030764 56030764 T G OR10P1 Missense_Mutation p.V30G 0.17 tolerated(0.31) benign(0.002) TCGA-63-5131-01 12 56522358 56522358 C T ESYT1 Silent p.L85L 0.47 TCGA-63-5131-01 12 6703741 6703741 C A CHD4 Missense_Mutation p.G733C 0.16 deleterious(0) possibly_damaging(0.827) TCGA-63-5131-01 12 8374731 8374731 C G FAM90A1 Missense_Mutation p.R361P 0.46 tolerated(0.06) benign(0.284) TCGA-63-5131-01 13 101828722 101828722 G T NALCN Missense_Mutation p.L590I 0.52 tolerated(0.08) benign(0.241) TCGA-63-5131-01 13 110853789 110853789 T A COL4A1 Silent p.P360P 0.40 TCGA-63-5131-01 13 27847445 27847445 C G RASL11A Missense_Mutation p.N181K 0.27 deleterious(0.01) possibly_damaging(0.474) TCGA-63-5131-01 13 28623578 28623578 A G FLT3 Missense_Mutation p.Y327H 0.63 tolerated(0.58) benign(0.006) TCGA-63-5131-01 13 33684169 33684169 G T STARD13 Missense_Mutation p.P963H 0.59 deleterious(0) probably_damaging(1) TCGA-63-5131-01 13 38934957 38934957 A G UFM1 3'UTR 0.65 TCGA-63-5131-01 13 41635710 41635710 C T WBP4 5'UTR 0.56 TCGA-63-5131-01 13 42875329 42875329 C G AKAP11 Missense_Mutation p.S816C 0.32 tolerated(0.08) benign(0.069) TCGA-63-5131-01 13 46549424 46549424 T A ZC3H13 Missense_Mutation p.K821I 0.64 unknown(0) TCGA-63-5131-01 13 70681661 70681661 G C KLHL1 Silent p.L57L 0.55 TCGA-63-5131-01 14 103410592 103410592 C T CDC42BPB Silent p.V1348V 0.10 TCGA-63-5131-01 14 104251219 104251219 C A PPP1R13B Nonsense_Mutation p.E64* 0.20 TCGA-63-5131-01 14 105518127 105518127 T - GPR132 Frame_Shift_Del p.K116Rfs*2 0.25 TCGA-63-5131-01 14 106322129 106322129 G T IGHM Nonsense_Mutation p.Y65* 0.38 TCGA-63-5131-01 14 21681153 21681153 C G HNRNPC Missense_Mutation p.K176N 0.33 deleterious(0.01) benign(0.028) TCGA-63-5131-01 14 23855703 23855703 G T MYH6 Silent p.R1594R 0.13 TCGA-63-5131-01 14 23868034 23868035 - T MYH6 Frame_Shift_Ins p.N598Kfs*38 0.32 TCGA-63-5131-01 14 24544799 24544799 C A CPNE6 Missense_Mutation p.T288K 0.23 tolerated(1) benign(0.002) TCGA-63-5131-01 14 31602498 31602498 C G HECTD1 Missense_Mutation p.D1290H 0.11 deleterious(0) probably_damaging(0.997) TCGA-63-5131-01 14 54417287 54417287 T G BMP4 Silent p.P230P 0.04 TCGA-63-5131-01 14 58060795 58060795 G A SLC35F4 Missense_Mutation p.P87S 0.38 tolerated_low_confidence(0.27) benign(0.004) TCGA-63-5131-01 14 63483642 63483642 A T KCNH5 Missense_Mutation p.I35N 0.31 deleterious(0) probably_damaging(0.952) TCGA-63-5131-01 14 63784564 63784564 G T GPHB5 Intron 0.42 TCGA-63-5131-01 14 68189333 68189333 G C RDH12 5'UTR 0.35 TCGA-63-5131-01 14 71555146 71555146 A T PCNX Missense_Mutation p.S1813C 0.24 tolerated(0.14) probably_damaging(0.999) TCGA-63-5131-01 14 74539005 74539005 A T ALDH6A1 Silent p.I83I 0.35 TCGA-63-5131-01 14 75471540 75471540 C G EIF2B2 Silent p.L178L 0.37 TCGA-63-5131-01 14 75513760 75513760 C G MLH3 Missense_Mutation p.E867Q 0.17 tolerated(0.2) benign(0.04) TCGA-63-5131-01 14 94069606 94069606 A T UNC79 Missense_Mutation p.N1022I 0.26 deleterious(0) probably_damaging(0.999) TCGA-63-5131-01 15 101009683 101009683 T A CERS3 Nonsense_Mutation p.K249* 0.43 TCGA-63-5131-01 15 20876494 20876494 C A NBEAP1 RNA 0.07 TCGA-63-5131-01 15 23811655 23811655 G T MKRN3 Silent p.R242R 0.55 TCGA-63-5131-01 15 23931488 23931488 G C NDN Missense_Mutation p.R293G 0.54 deleterious(0) probably_damaging(0.997) TCGA-63-5131-01 15 23931639 23931639 C T NDN Missense_Mutation p.M242I 0.52 deleterious(0) benign(0.001) TCGA-63-5131-01 15 26812811 26812811 T C GABRB3 Missense_Mutation p.Y251C 0.55 deleterious(0) probably_damaging(1) TCGA-63-5131-01 15 33873831 33873831 C A RYR3 Silent p.L520L 0.05 TCGA-63-5131-01 15 59480319 59480319 C T MYO1E Silent p.Q634Q 0.49 TCGA-63-5131-01 15 63893515 63893515 C A FBXL22 Missense_Mutation p.P125Q 0.55 tolerated_low_confidence(0.23) benign(0.001) TCGA-63-5131-01 15 66727571 66727571 G A MAP2K1 Missense_Mutation p.R96K 0.51 tolerated(0.49) benign(0.414) TCGA-63-5131-01 16 20803421 20803421 C T ACSM3 Missense_Mutation p.A475V 0.41 deleterious(0) possibly_damaging(0.572) TCGA-63-5131-01 16 2106196 2106196 G T TSC2 Splice_Site p.X200_splice 0.37 TCGA-63-5131-01 16 4391372 4391372 C T PAM16 Silent p.Q74Q 0.50 TCGA-63-5131-01 16 47493054 47493054 T C ITFG1 Missense_Mutation p.N81D 0.16 tolerated(0.39) probably_damaging(0.953) TCGA-63-5131-01 16 51173329 51173329 G C SALL1 Missense_Mutation p.T935R 0.42 tolerated(0.28) benign(0.116) TCGA-63-5131-01 16 68090271 68090271 A T DUS2 Missense_Mutation p.N105Y 0.44 deleterious(0.01) benign(0.219) TCGA-63-5131-01 16 68224873 68224873 G T NFATC3 Missense_Mutation p.L767F 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.691) TCGA-63-5131-01 16 68373738 68373738 G T PRMT7 Missense_Mutation p.R265M 0.19 tolerated(0.16) benign(0.017) TCGA-63-5131-01 16 68373740 68373740 C T PRMT7 Missense_Mutation p.R266W 0.20 deleterious(0.01) benign(0.339) TCGA-63-5131-01 16 78064808 78064808 T G CLEC3A 3'UTR 0.33 TCGA-63-5131-01 16 81095228 81095228 A T C16orf46 Missense_Mutation p.D242E 0.15 tolerated(0.11) benign(0) TCGA-63-5131-01 16 85682268 85682268 G - GSE1 Frame_Shift_Del p.G114Afs*11 0.39 TCGA-63-5131-01 16 88066787 88066787 A G BANP Missense_Mutation p.Y371C 0.46 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-63-5131-01 17 10352044 10352044 G T MYH4 Silent p.S1474S 0.50 TCGA-63-5131-01 17 10352088 10352088 A T MYH4 Missense_Mutation p.W1460R 0.48 deleterious(0.04) probably_damaging(0.974) TCGA-63-5131-01 17 10551951 10551951 G C MYH3 Missense_Mutation p.Q220E 0.56 deleterious(0) probably_damaging(0.98) TCGA-63-5131-01 17 1638906 1638906 G A WDR81 Silent p.V1740V 0.10 TCGA-63-5131-01 17 21319870 21319870 C T KCNJ12 Missense_Mutation p.P406S 0.20 tolerated(0.19) benign(0.003) TCGA-63-5131-01 17 35343921 35343921 A G AATF Missense_Mutation p.K280E 0.48 deleterious(0.01) possibly_damaging(0.673) TCGA-63-5131-01 17 39140175 39140175 C T KRT40 Silent p.L117L 0.04 TCGA-63-5131-01 17 40937114 40937114 G C WNK4 Splice_Site p.X391_splice 0.31 TCGA-63-5131-01 17 435971 435971 C T VPS53 Intron 0.38 TCGA-63-5131-01 17 53342907 53342907 T C HLF Missense_Mutation p.V21A 0.10 tolerated(0.16) probably_damaging(0.978) TCGA-63-5131-01 17 55027410 55027410 T C COIL Missense_Mutation p.E398G 0.27 tolerated(1) benign(0) TCGA-63-5131-01 17 61396404 61396404 G A TANC2 Missense_Mutation p.E436K 0.22 deleterious(0.01) benign(0.443) TCGA-63-5131-01 17 618002 618002 A T VPS53 5'UTR 0.47 TCGA-63-5131-01 17 67212069 67212069 T G ABCA10 Missense_Mutation p.T249P 0.03 deleterious(0.01) probably_damaging(0.974) TCGA-63-5131-01 17 74261643 74261643 G A UBALD2 Silent p.L19L 0.20 TCGA-63-5131-01 17 7578457 7578457 C A TP53 Missense_Mutation p.R158L 0.51 deleterious(0) probably_damaging(0.986) TCGA-63-5131-01 17 79914950 79914950 G T NOTUM Missense_Mutation p.S232R 0.51 deleterious(0.04) probably_damaging(1) TCGA-63-5131-01 17 80618872 80618872 C A RAB40B Silent p.R85R 0.41 TCGA-63-5131-01 17 8161209 8161209 A G PFAS Missense_Mutation p.N387S 0.56 deleterious(0.01) probably_damaging(0.98) TCGA-63-5131-01 17 8793402 8793402 G T PIK3R5 Silent p.T233T 0.48 TCGA-63-5131-01 18 13048922 13048922 C G CEP192 Missense_Mutation p.S711C 0.28 deleterious(0) probably_damaging(0.983) TCGA-63-5131-01 18 14124406 14124406 G C ZNF519 Missense_Mutation p.Q25E 0.32 deleterious(0) benign(0.055) TCGA-63-5131-01 18 14537920 14537920 A T POTEC Silent p.A230A 0.27 TCGA-63-5131-01 18 25565543 25565543 G T CDH2 Missense_Mutation p.P642T 0.23 tolerated(0.55) possibly_damaging(0.667) TCGA-63-5131-01 18 28659872 28659872 C G DSC2 Missense_Mutation p.R535T 0.03 deleterious(0.02) probably_damaging(1) TCGA-63-5131-01 18 29693742 29693742 C G RNF138 Missense_Mutation p.S104C 0.23 deleterious(0.01) possibly_damaging(0.838) TCGA-63-5131-01 18 42532904 42532904 T C SETBP1 Missense_Mutation p.V1200A 0.28 tolerated_low_confidence(0.33) benign(0.028) TCGA-63-5131-01 18 47813213 47813213 C G CXXC1 Missense_Mutation p.D7H 0.12 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-63-5131-01 18 56651714 56651714 G C ZNF532 3'UTR 0.44 TCGA-63-5131-01 18 56963953 56963953 C G CPLX4 Missense_Mutation p.E154Q 0.59 deleterious(0.04) benign(0.353) TCGA-63-5131-01 18 64197172 64197172 C T CDH19 Silent p.L456L 0.17 TCGA-63-5131-01 18 66678309 66678309 C A CCDC102B Missense_Mutation p.L468I 0.46 deleterious(0) probably_damaging(0.976) TCGA-63-5131-01 18 72999377 72999377 C A TSHZ1 Missense_Mutation p.P627H 0.44 deleterious(0) probably_damaging(0.923) TCGA-63-5131-01 19 10080291 10080291 C A COL5A3 Missense_Mutation p.R1353L 0.41 unknown(0) TCGA-63-5131-01 19 12089390 12089390 C T ZNF763 Silent p.I220I 0.08 TCGA-63-5131-01 19 12817544 12817544 C G TNPO2 Missense_Mutation p.D446H 0.36 deleterious(0.01) benign(0.051) TCGA-63-5131-01 19 20296798 20296798 A T ZNF486 Missense_Mutation p.I54F 0.21 deleterious(0.01) probably_damaging(0.969) TCGA-63-5131-01 19 22154685 22154685 G T ZNF208 Missense_Mutation p.H1051N 0.18 deleterious(0.02) probably_damaging(0.978) TCGA-63-5131-01 19 22364023 22364023 C T ZNF676 Missense_Mutation p.E166K 0.40 tolerated(0.06) benign(0.017) TCGA-63-5131-01 19 23836897 23836897 C G ZNF675 Missense_Mutation p.G280R 0.38 tolerated(0.06) probably_damaging(1) TCGA-63-5131-01 19 2422036 2422036 C T TMPRSS9 Missense_Mutation p.S746L 0.40 tolerated(0.16) benign(0.009) TCGA-63-5131-01 19 34791812 34791812 A G KIAA0355 Missense_Mutation p.E145G 0.28 deleterious_low_confidence(0.01) probably_damaging(0.969) TCGA-63-5131-01 19 38968482 38968482 G T RYR1 Missense_Mutation p.G1476W 0.08 probably_damaging(1) TCGA-63-5131-01 19 40411910 40411910 C G FCGBP Missense_Mutation p.G1240R 0.51 probably_damaging(1) TCGA-63-5131-01 19 42584936 42584936 A G ZNF574 Silent p.T726T 0.50 TCGA-63-5131-01 19 4311905 4311905 G A FSD1 Nonsense_Mutation p.W186* 0.31 TCGA-63-5131-01 19 43762226 43762226 G T PSG9 Intron 0.49 TCGA-63-5131-01 19 55421426 55421426 G T NCR1 Splice_Site p.X228_splice 0.47 TCGA-63-5131-01 1 103453275 103453275 G A COL11A1 Missense_Mutation p.P806S 0.22 unknown(0) TCGA-63-5131-01 1 109779170 109779170 G A SARS Silent p.K419K 0.16 TCGA-63-5131-01 1 110254936 110254936 T A GSTM5 Translation_Start_Site p.M1? 0.26 deleterious(0) probably_damaging(0.995) TCGA-63-5131-01 1 110607449 110607449 G A ALX3 Silent p.P118P 0.07 TCGA-63-5131-01 1 111434971 111434971 G T CD53 Missense_Mutation p.C23F 0.39 tolerated(0.05) probably_damaging(0.976) TCGA-63-5131-01 1 120050044 120050044 C A HSD3B1 5'UTR 0.29 TCGA-63-5131-01 1 146466087 146466087 T C NBPF12 Missense_Mutation p.L3321P 0.26 benign(0.404) TCGA-63-5131-01 1 146466088 146466088 G T NBPF12 Silent p.L3321L 0.27 TCGA-63-5131-01 1 147083634 147083634 C G BCL9 5'UTR 0.31 TCGA-63-5131-01 1 150443105 150443105 A C RPRD2 Missense_Mutation p.T561P 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.588) TCGA-63-5131-01 1 151260226 151260226 G C ZNF687 Missense_Mutation p.G487R 0.27 deleterious(0) probably_damaging(1) TCGA-63-5131-01 1 152129015 152129015 C T RPTN Missense_Mutation p.R187K 0.18 tolerated(0.1) benign(0.134) TCGA-63-5131-01 1 153745435 153745435 G A INTS3 Missense_Mutation p.E977K 0.28 deleterious(0.01) possibly_damaging(0.888) TCGA-63-5131-01 1 153782741 153782741 C T GATAD2B Missense_Mutation p.G565D 0.39 deleterious(0.01) benign(0.03) TCGA-63-5131-01 1 153973458 153973458 C T NUP210L Missense_Mutation p.V1754I 0.34 tolerated(0.17) benign(0.033) TCGA-63-5131-01 1 158450007 158450007 T G OR10R2 Missense_Mutation p.F114V 0.02 tolerated(0.25) benign(0.069) TCGA-63-5131-01 1 158596725 158596725 G A SPTA1 Silent p.L1913L 0.33 TCGA-63-5131-01 1 159888847 159888847 C A TAGLN2 Intron 0.26 TCGA-63-5131-01 1 16101338 16101338 G A FBLIM1 Missense_Mutation p.D313N 0.20 deleterious(0.01) benign(0.002) TCGA-63-5131-01 1 166826727 166826728 - A TADA1 3'UTR 0.20 TCGA-63-5131-01 1 172051015 172051015 A G DNM3 Missense_Mutation p.N489S 0.28 deleterious(0.03) probably_damaging(0.983) TCGA-63-5131-01 1 179076746 179076746 C T ABL2 3'UTR 0.30 TCGA-63-5131-01 1 179561943 179561943 C A TDRD5 Missense_Mutation p.R65S 0.30 tolerated(1) benign(0.001) TCGA-63-5131-01 1 198725322 198725322 A C PTPRC 3'UTR 0.09 TCGA-63-5131-01 1 201687762 201687762 A G NAV1 Missense_Mutation p.I369V 0.35 tolerated(0.38) benign(0.011) TCGA-63-5131-01 1 20304528 20304528 G A PLA2G2A Missense_Mutation p.S91L 0.17 tolerated(0.14) benign(0.004) TCGA-63-5131-01 1 203452317 203452317 G A PRELP Missense_Mutation p.R2K 0.27 deleterious_low_confidence(0) benign(0.039) TCGA-63-5131-01 1 205801751 205801751 G A PM20D1 Silent p.F420F 0.30 TCGA-63-5131-01 1 210012355 210012355 C A DIEXF Missense_Mutation p.N388K 0.29 deleterious(0.02) possibly_damaging(0.897) TCGA-63-5131-01 1 211192563 211192563 G C KCNH1 Nonsense_Mutation p.Y198* 0.21 TCGA-63-5131-01 1 220970070 220970070 C T MARC1 Missense_Mutation p.R179C 0.43 deleterious(0) probably_damaging(0.996) TCGA-63-5131-01 1 226924191 226924191 G A ITPKB Silent p.L323L 0.39 TCGA-63-5131-01 1 228529182 228529182 C T OBSCN Silent p.R6924R 0.29 TCGA-63-5131-01 1 230810741 230810741 C T COG2 Intron 0.31 TCGA-63-5131-01 1 235945382 235945382 G - LYST Frame_Shift_Del p.P1623Lfs*25 0.26 TCGA-63-5131-01 1 237777821 237777821 C A RYR2 Missense_Mutation p.A1798D 0.30 possibly_damaging(0.639) TCGA-63-5131-01 1 240966266 240966266 C A RGS7 Missense_Mutation p.D433Y 0.04 deleterious(0) probably_damaging(0.999) TCGA-63-5131-01 1 24426202 24426202 G T MYOM3 Missense_Mutation p.N208K 0.28 tolerated(0.15) possibly_damaging(0.876) TCGA-63-5131-01 1 247902808 247902808 G C OR14K1 Missense_Mutation p.A298P 0.20 deleterious(0) probably_damaging(0.941) TCGA-63-5131-01 1 248737448 248737448 G T OR2T34 Missense_Mutation p.T204K 0.17 deleterious(0) benign(0.002) TCGA-63-5131-01 1 34209097 34209097 C A CSMD2 Nonsense_Mutation p.E613* 0.21 TCGA-63-5131-01 1 41107406 41107406 C G RIMS3 Missense_Mutation p.K64N 0.22 deleterious_low_confidence(0) benign(0.011) TCGA-63-5131-01 1 43392786 43392786 G A SLC2A1 Nonsense_Mutation p.Q469* 0.41 TCGA-63-5131-01 1 65851519 65851519 C A DNAJC6 Missense_Mutation p.R309S 0.50 deleterious(0) probably_damaging(1) TCGA-63-5131-01 1 79002200 79002200 T A PTGFR Missense_Mutation p.V303E 0.18 deleterious(0) probably_damaging(1) TCGA-63-5131-01 20 2444418 2444418 C A SNRPB Missense_Mutation p.R132L 0.38 tolerated(0.07) benign(0.052) TCGA-63-5131-01 20 33122575 33122575 A G DYNLRB1 Missense_Mutation p.K75E 0.14 deleterious(0) possibly_damaging(0.596) TCGA-63-5131-01 20 35944790 35944790 C T MANBAL Missense_Mutation p.P77L 0.15 tolerated(0.22) unknown(0) TCGA-63-5131-01 20 39704921 39704921 G A TOP1 Missense_Mutation p.R89Q 0.25 tolerated_low_confidence(0.07) unknown(0) TCGA-63-5131-01 20 62195014 62195014 G A HELZ2 Nonsense_Mutation p.Q1721* 0.38 TCGA-63-5131-01 20 62421809 62421809 T A ZBTB46 Missense_Mutation p.N101I 0.25 deleterious(0) probably_damaging(0.999) TCGA-63-5131-01 20 62853343 62853343 C T MYT1 Missense_Mutation p.T780I 0.35 probably_damaging(1) TCGA-63-5131-01 20 7980393 7980393 G T TMX4 Silent p.S151S 0.21 TCGA-63-5131-01 22 16287519 16287519 G C POTEH Missense_Mutation p.H123D 0.13 deleterious_low_confidence(0.01) benign(0.15) TCGA-63-5131-01 22 16287598 16287598 G T POTEH Missense_Mutation p.S96R 0.15 deleterious_low_confidence(0.04) benign(0.016) TCGA-63-5131-01 22 18028483 18028483 A T CECR2 Missense_Mutation p.H1148L 0.41 deleterious(0) probably_damaging(0.998) TCGA-63-5131-01 22 21288386 21288386 C G CRKL Missense_Mutation p.Q211E 0.30 tolerated(0.56) possibly_damaging(0.753) TCGA-63-5131-01 22 21350124 21350124 C T LZTR1 Missense_Mutation p.R678W 0.38 tolerated(0.19) probably_damaging(0.935) TCGA-63-5131-01 22 22453166 22453166 C T IGLV8-61 Missense_Mutation p.P4L 0.24 tolerated(0.07) benign(0.008) TCGA-63-5131-01 22 25115400 25115400 G T PIWIL3 3'UTR 0.34 TCGA-63-5131-01 22 29091746 29091746 T C CHEK2 Missense_Mutation p.Y447C 0.26 deleterious(0) probably_damaging(1) TCGA-63-5131-01 22 39112790 39112790 C T GTPBP1 Missense_Mutation p.R207C 0.09 deleterious(0) probably_damaging(0.997) TCGA-63-5131-01 22 40061520 40061520 C A CACNA1I Missense_Mutation p.P1290Q 0.29 tolerated(0.21) probably_damaging(0.968) TCGA-63-5131-01 22 41907949 41907949 C A ACO2 Missense_Mutation p.P168T 0.22 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-63-5131-01 22 45564125 45564125 G C NUP50 Missense_Mutation p.E23Q 0.04 deleterious(0.04) possibly_damaging(0.562) TCGA-63-5131-01 22 50664511 50664511 T C TUBGCP6 Missense_Mutation p.T601A 0.32 deleterious(0) possibly_damaging(0.866) TCGA-63-5131-01 2 110350640 110350640 A C SEPT10 Missense_Mutation p.D29E 0.13 tolerated(0.16) benign(0.001) TCGA-63-5131-01 2 116066869 116066869 C A DPP10 Missense_Mutation p.L43M 0.32 tolerated(0.15) possibly_damaging(0.891) TCGA-63-5131-01 2 11780490 11780490 C G GREB1 Missense_Mutation p.D1920E 0.11 tolerated(0.19) benign(0.126) TCGA-63-5131-01 2 135745727 135745727 G C MAP3K19 Missense_Mutation p.P239A 0.33 tolerated(0.7) benign(0.006) TCGA-63-5131-01 2 141032062 141032062 A C LRP1B Missense_Mutation p.V4358G 0.30 benign(0.307) TCGA-63-5131-01 2 141072664 141072664 A G LRP1B Silent p.D4215D 0.13 TCGA-63-5131-01 2 141201916 141201916 T A LRP1B Missense_Mutation p.E3426V 0.09 possibly_damaging(0.728) TCGA-63-5131-01 2 1507739 1507739 C A TPO Missense_Mutation p.D802E 0.41 tolerated(0.12) possibly_damaging(0.619) TCGA-63-5131-01 2 152139423 152139423 C A NMI Nonsense_Mutation p.E14* 0.34 TCGA-63-5131-01 2 15767206 15767206 A T DDX1 Silent p.S541S 0.44 TCGA-63-5131-01 2 161138778 161138778 G C RBMS1 Intron 0.22 TCGA-63-5131-01 2 162873375 162873375 C A DPP4 Silent p.G490G 0.06 TCGA-63-5131-01 2 168115170 168115170 A G XIRP2 3'UTR 0.34 TCGA-63-5131-01 2 170374740 170374740 G A KLHL41 Missense_Mutation p.G473R 0.42 tolerated(0.55) benign(0.21) TCGA-63-5131-01 2 178346847 178346847 A C AGPS Missense_Mutation p.K389T 0.10 deleterious(0.01) possibly_damaging(0.811) TCGA-63-5131-01 2 179565897 179565899 AGG CT TTN Frame_Shift_Del p.L10211Vfs*23 0.13 TCGA-63-5131-01 2 179667021 179667021 A C TTN Missense_Mutation p.S47A 0.28 TCGA-63-5131-01 2 182766798 182766798 G T SSFA2 Missense_Mutation p.D340Y 0.14 deleterious(0) probably_damaging(0.996) TCGA-63-5131-01 2 196741338 196741338 T A DNAH7 Missense_Mutation p.Q2016L 0.27 deleterious(0) probably_damaging(0.984) TCGA-63-5131-01 2 196883987 196883987 G T DNAH7 Missense_Mutation p.S259Y 0.19 deleterious(0.05) benign(0.024) TCGA-63-5131-01 2 204193208 204193208 T C ABI2 5'UTR 0.30 TCGA-63-5131-01 2 206659817 206659817 C G NRP2 3'UTR 0.18 TCGA-63-5131-01 2 210867369 210867369 T C RPE 5'UTR 0.25 TCGA-63-5131-01 2 224743306 224743306 G C WDFY1 3'UTR 0.31 TCGA-63-5131-01 2 227924179 227924179 A G COL4A4 Silent p.L775L 0.34 TCGA-63-5131-01 2 27802598 27802598 G C C2orf16 Missense_Mutation p.Q1053H 0.40 tolerated(0.06) benign(0.438) TCGA-63-5131-01 2 39485729 39485729 C T MAP4K3 Splice_Site p.X770_splice 0.09 TCGA-63-5131-01 2 43452461 43452461 G C ZFP36L2 Missense_Mutation p.P161R 0.45 deleterious(0) probably_damaging(0.997) TCGA-63-5131-01 2 55601952 55601952 G A CCDC88A Missense_Mutation p.S114F 0.09 deleterious(0) possibly_damaging(0.857) TCGA-63-5131-01 2 58459241 58459241 C A FANCL Missense_Mutation p.D35Y 0.52 deleterious(0) possibly_damaging(0.73) TCGA-63-5131-01 2 64780445 64780445 G C AFTPH Missense_Mutation p.D613H 0.13 deleterious(0.02) benign(0.36) TCGA-63-5131-01 2 70457920 70457920 C G TIA1 Missense_Mutation p.A64P 0.25 deleterious(0.04) possibly_damaging(0.633) TCGA-63-5131-01 2 73679497 73679497 G T ALMS1 Missense_Mutation p.S1947I 0.38 benign(0.288) TCGA-63-5131-01 2 75425883 75425883 G C TACR1 Missense_Mutation p.H60D 0.38 deleterious(0) probably_damaging(0.999) TCGA-63-5131-01 2 8890264 8890264 G C KIDINS220 Missense_Mutation p.P1131R 0.05 deleterious(0.02) probably_damaging(0.917) TCGA-63-5131-01 2 89986364 89986364 G A IGKV2D-29 Missense_Mutation p.A5T 0.12 tolerated(0.2) benign(0.392) TCGA-63-5131-01 2 9490936 9490936 G A ASAP2 Splice_Site p.X342_splice 0.11 TCGA-63-5131-01 2 95847928 95847928 C G ZNF2 3'UTR 0.27 TCGA-63-5131-01 2 96795863 96795863 T A ASTL Missense_Mutation p.K220M 0.29 deleterious(0) probably_damaging(0.992) TCGA-63-5131-01 3 11301811 11301811 C T HRH1 Missense_Mutation p.S363L 0.53 tolerated(0.06) benign(0.026) TCGA-63-5131-01 3 129303055 129303055 G C PLXND1 Missense_Mutation p.S684C 0.19 deleterious(0.02) benign(0.003) TCGA-63-5131-01 3 1320115 1320115 C G CNTN6 Missense_Mutation p.T126S 0.44 tolerated(0.24) benign(0.067) TCGA-63-5131-01 3 134880897 134880897 A T EPHB1 Missense_Mutation p.Q487L 0.09 tolerated(0.07) benign(0.014) TCGA-63-5131-01 3 173996793 173996793 A G NLGN1 Silent p.L334L 0.07 TCGA-63-5131-01 3 179051541 179051541 A G ZNF639 Silent p.K263K 0.31 TCGA-63-5131-01 3 182575664 182575664 A G ATP11B Splice_Site p.X284_splice 0.05 TCGA-63-5131-01 3 19295285 19295285 G T KCNH8 Silent p.G72G 0.53 TCGA-63-5131-01 3 32525404 32525404 C A CMTM6 3'UTR 0.05 TCGA-63-5131-01 3 37034641 37034641 C T EPM2AIP1 5'UTR 0.62 TCGA-63-5131-01 3 38770244 38770244 C A SCN10A Missense_Mutation p.G810V 0.42 deleterious(0) probably_damaging(0.973) TCGA-63-5131-01 3 42727965 42727965 G A KLHL40 Silent p.K285K 0.46 TCGA-63-5131-01 3 42729743 42729743 A T KLHL40 Missense_Mutation p.E421V 0.31 deleterious(0.04) benign(0.13) TCGA-63-5131-01 3 52538859 52538859 G T STAB1 Silent p.G448G 0.56 TCGA-63-5131-01 3 52551966 52551966 G A STAB1 Missense_Mutation p.D1570N 0.52 tolerated(0.36) benign(0.002) TCGA-63-5131-01 3 52582240 52582240 C T PBRM1 Missense_Mutation p.D1530N 0.04 tolerated(0.54) probably_damaging(0.992) TCGA-63-5131-01 3 64554154 64554154 C G ADAMTS9 Missense_Mutation p.D1472H 0.10 tolerated(0.16) possibly_damaging(0.644) TCGA-63-5131-01 3 77607259 77607259 A G ROBO2 Missense_Mutation p.T482A 0.21 deleterious(0.02) benign(0.001) TCGA-63-5131-01 3 78706414 78706414 C A ROBO1 Missense_Mutation p.W816C 0.27 deleterious(0) probably_damaging(0.997) TCGA-63-5131-01 3 78706415 78706415 C G ROBO1 Missense_Mutation p.W816S 0.27 deleterious(0) probably_damaging(0.995) TCGA-63-5131-01 3 98073002 98073002 A G OR5K4 Missense_Mutation p.Y102C 0.64 deleterious(0.01) possibly_damaging(0.697) TCGA-63-5131-01 4 102942683 102942683 G A BANK1 Missense_Mutation p.D407N 0.33 tolerated(0.44) benign(0.001) TCGA-63-5131-01 4 104577502 104577502 C G TACR3 Splice_Site p.X246_splice 0.20 TCGA-63-5131-01 4 128725004 128725004 T C HSPA4L Missense_Mutation p.L295P 0.22 tolerated(0.14) possibly_damaging(0.699) TCGA-63-5131-01 4 13339562 13339562 G C HSP90AB2P RNA 0.18 TCGA-63-5131-01 4 144797984 144797984 G A GYPE Missense_Mutation p.A54V 0.75 tolerated_low_confidence(0.18) possibly_damaging(0.695) TCGA-63-5131-01 4 3521853 3521853 A T LRPAP1 Missense_Mutation p.S139R 0.41 tolerated(0.31) benign(0.003) TCGA-63-5131-01 4 46737167 46737167 T A COX7B2 Missense_Mutation p.I15F 0.09 tolerated(0.25) benign(0.012) TCGA-63-5131-01 4 47559926 47559926 T G ATP10D Silent p.A690A 0.23 TCGA-63-5131-01 4 54325539 54325539 A G FIP1L1 Missense_Mutation p.R570G 0.04 deleterious(0) possibly_damaging(0.852) TCGA-63-5131-01 4 70070204 70070204 G C UGT2B11 Missense_Mutation p.N418K 0.22 tolerated(0.32) benign(0.066) TCGA-63-5131-01 4 72634150 72634150 C A GC Silent p.L62L 0.32 TCGA-63-5131-01 4 72634151 72634151 C A GC Splice_Site p.X62_splice 0.32 TCGA-63-5131-01 4 78870974 78870974 A G MRPL1 Missense_Mutation p.I267M 0.39 deleterious(0) probably_damaging(0.909) TCGA-63-5131-01 4 79322022 79322022 A G FRAS1 Silent p.T1370T 0.42 TCGA-63-5131-01 4 79418102 79418102 C A FRAS1 Silent p.S3034S 0.19 TCGA-63-5131-01 4 89052313 89052313 G T ABCG2 Missense_Mutation p.A144E 0.22 deleterious(0) probably_damaging(0.993) TCGA-63-5131-01 5 1052454 1052454 G C SLC12A7 3'UTR 0.08 TCGA-63-5131-01 5 128365396 128365396 T G SLC27A6 Missense_Mutation p.I560S 0.52 deleterious(0) possibly_damaging(0.71) TCGA-63-5131-01 5 131796410 131796410 C T C5orf56 Missense_Mutation p.S82L 0.44 tolerated_low_confidence(0.08) possibly_damaging(0.519) TCGA-63-5131-01 5 138362594 138362594 C T SIL1 Missense_Mutation p.D181N 0.51 deleterious(0) probably_damaging(1) TCGA-63-5131-01 5 140201816 140201816 G A PCDHA5 Silent p.P152P 0.15 TCGA-63-5131-01 5 170239249 170239249 A G GABRP Missense_Mutation p.Y437C 0.44 deleterious(0) probably_damaging(0.997) TCGA-63-5131-01 5 172518521 172518521 G A CREBRF Intron 0.63 TCGA-63-5131-01 5 176002375 176002375 C A CDHR2 Missense_Mutation p.P239H 0.59 deleterious(0) probably_damaging(1) TCGA-63-5131-01 5 180424256 180424256 C A BTNL3 Missense_Mutation p.D147E 0.70 tolerated(0.8) benign(0.352) TCGA-63-5131-01 5 26906871 26906871 G T CDH9 Missense_Mutation p.S200R 0.14 deleterious(0) probably_damaging(0.994) TCGA-63-5131-01 5 33637736 33637736 C - ADAMTS12 Frame_Shift_Del p.D612Tfs*29 0.21 TCGA-63-5131-01 5 33936966 33936966 G T RXFP3 Missense_Mutation p.A41S 0.21 tolerated(0.24) benign(0.119) TCGA-63-5131-01 5 36049408 36049408 C T UGT3A2 Silent p.V142V 0.08 TCGA-63-5131-01 5 38931986 38931986 C T OSMR Silent p.S738S 0.16 TCGA-63-5131-01 5 43122223 43122223 G T ZNF131 Missense_Mutation p.R23L 0.16 deleterious(0.02) probably_damaging(0.994) TCGA-63-5131-01 5 76029116 76029116 T C F2R Missense_Mutation p.C356R 0.51 deleterious(0.01) probably_damaging(0.985) TCGA-63-5131-01 5 90052867 90052867 G T GPR98 Silent p.R3943R 0.42 TCGA-63-5131-01 6 10529003 10529003 A G GCNT2 5'UTR 0.33 TCGA-63-5131-01 6 127912803 127912803 A G C6orf58 3'UTR 0.34 TCGA-63-5131-01 6 128176300 128176300 C A THEMIS Missense_Mutation p.C42F 0.17 deleterious(0) probably_damaging(0.958) TCGA-63-5131-01 6 13711172 13711172 T C RANBP9 Missense_Mutation p.Y189C 0.43 tolerated(0.05) possibly_damaging(0.737) TCGA-63-5131-01 6 137476099 137476099 G A IL22RA2 Missense_Mutation p.R151W 0.04 deleterious(0) probably_damaging(1) TCGA-63-5131-01 6 150266502 150266502 G A ULBP2 Missense_Mutation p.R48Q 0.18 tolerated(0.5) benign(0.007) TCGA-63-5131-01 6 153316325 153316325 C G MTRF1L Missense_Mutation p.A157P 0.29 deleterious(0) probably_damaging(0.999) TCGA-63-5131-01 6 154414628 154414628 A T OPRM1 Intron 0.26 TCGA-63-5131-01 6 15496958 15496958 G A JARID2 Missense_Mutation p.R501Q 0.39 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-63-5131-01 6 160412337 160412337 C G IGF2R Missense_Mutation p.R91G 0.34 tolerated(0.41) benign(0) TCGA-63-5131-01 6 160999556 160999556 T A LPA Missense_Mutation p.Q1490H 0.16 deleterious_low_confidence(0.01) probably_damaging(0.951) TCGA-63-5131-01 6 165715563 165715563 G C C6orf118 Missense_Mutation p.A83G 0.29 deleterious(0.01) probably_damaging(0.975) TCGA-63-5131-01 6 167550874 167550874 G A CCR6 3'UTR 0.38 TCGA-63-5131-01 6 32149126 32149126 A C AGER Splice_Site p.X373_splice 0.19 TCGA-63-5131-01 6 33385345 33385345 G A CUTA Missense_Mutation p.S76L 0.22 tolerated(0.19) benign(0.108) TCGA-63-5131-01 6 35837429 35837429 C T SRPK1 Missense_Mutation p.C414Y 0.09 tolerated(1) benign(0.045) TCGA-63-5131-01 6 41899507 41899507 C T BYSL Missense_Mutation p.R303W 0.17 deleterious(0) probably_damaging(0.997) TCGA-63-5131-01 6 44221330 44221330 G A HSP90AB1 Missense_Mutation p.D724N 0.32 deleterious(0.01) benign(0.169) TCGA-63-5131-01 6 47847001 47847001 G A PTCHD4 Silent p.L527L 0.39 TCGA-63-5131-01 6 70098745 70098745 C A BAI3 Missense_Mutation p.L1511M 0.30 deleterious(0.04) probably_damaging(0.996) TCGA-63-5131-01 6 70900022 70900022 G A COL19A1 Missense_Mutation p.D1011N 0.22 deleterious(0.03) possibly_damaging(0.53) TCGA-63-5131-01 6 80715595 80715595 C G TTK Missense_Mutation p.T12R 0.20 tolerated(0.86) benign(0.033) TCGA-63-5131-01 6 84930778 84930778 C T KIAA1009 Missense_Mutation p.D57N 0.26 tolerated(0.25) benign(0.009) TCGA-63-5131-01 6 88299720 88299720 C T RARS2 5'UTR 0.41 TCGA-63-5131-01 6 88768510 88768510 A G SPACA1 Silent p.K148K 0.13 TCGA-63-5131-01 6 90327746 90327746 C T ANKRD6 Missense_Mutation p.P263L 0.41 deleterious(0) benign(0.25) TCGA-63-5131-01 7 100552105 100552105 C G MUC3A Missense_Mutation p.L286V 0.02 deleterious(0.04) probably_damaging(0.952) TCGA-63-5131-01 7 103206771 103206771 G A RELN Silent p.G1612G 0.35 TCGA-63-5131-01 7 1131273 1131273 G C GPER1 5'UTR 0.09 TCGA-63-5131-01 7 113517680 113517680 A C PPP1R3A 3'UTR 0.16 TCGA-63-5131-01 7 130295938 130295938 C A COPG2 Missense_Mutation p.R208L 0.12 deleterious(0) probably_damaging(0.972) TCGA-63-5131-01 7 136849017 136849017 C A hsa-mir-490 Intron 0.31 TCGA-63-5131-01 7 138943252 138943252 G T UBN2 Missense_Mutation p.A228S 0.24 tolerated(0.06) probably_damaging(0.996) TCGA-63-5131-01 7 141765165 141765165 G T MGAM Silent p.G1505G 0.22 TCGA-63-5131-01 7 143747998 143747998 C T OR2A5 Silent p.F168F 0.27 TCGA-63-5131-01 7 146825877 146825877 C A CNTNAP2 Silent p.G344G 0.33 TCGA-63-5131-01 7 150269805 150269805 A G GIMAP4 Missense_Mutation p.N216S 0.28 deleterious(0.03) probably_damaging(0.969) TCGA-63-5131-01 7 4009032 4009032 G A SDK1 Missense_Mutation p.A564T 0.44 deleterious(0.05) possibly_damaging(0.887) TCGA-63-5131-01 7 4855864 4855864 T C RADIL Missense_Mutation p.D654G 0.20 deleterious(0) probably_damaging(0.979) TCGA-63-5131-01 7 4901019 4901019 C T PAPOLB Silent p.Q140Q 0.38 TCGA-63-5131-01 7 4917420 4917420 G A RADIL Silent p.G117G 0.37 TCGA-63-5131-01 7 720311 720311 G A PRKAR1B Missense_Mutation p.S77F 0.17 tolerated(0.14) benign(0.106) TCGA-63-5131-01 8 110457007 110457007 G A PKHD1L1 Missense_Mutation p.V1637I 0.10 tolerated(0.16) possibly_damaging(0.801) TCGA-63-5131-01 8 135524758 135524758 C A ZFAT Silent p.A1107A 0.16 TCGA-63-5131-01 8 144732380 144732380 T G ZNF623 Missense_Mutation p.L113R 0.13 deleterious(0.02) probably_damaging(0.979) TCGA-63-5131-01 8 144887289 144887289 C A SCRIB Missense_Mutation p.G888V 0.26 probably_damaging(0.986) TCGA-63-5131-01 8 146278499 146278499 G A C8orf33 Missense_Mutation p.G124S 0.21 deleterious(0.02) probably_damaging(1) TCGA-63-5131-01 8 27361174 27361174 C T EPHX2 Silent p.V80V 0.39 TCGA-63-5131-01 8 27361207 27361207 C A EPHX2 Silent p.I91I 0.45 TCGA-63-5131-01 8 27361224 27361224 C T EPHX2 Missense_Mutation p.S97L 0.40 tolerated(0.11) benign(0.016) TCGA-63-5131-01 8 27361225 27361225 A T EPHX2 Silent p.S97S 0.39 TCGA-63-5131-01 8 29006249 29006249 C A KIF13B Missense_Mutation p.R553L 0.51 tolerated(0.38) benign(0.048) TCGA-63-5131-01 8 31015036 31015036 C G WRN Silent p.P1324P 0.46 TCGA-63-5131-01 8 35542150 35542150 T A UNC5D Missense_Mutation p.C268S 0.44 deleterious(0) probably_damaging(0.995) TCGA-63-5131-01 8 39602390 39602390 G C ADAM2 Missense_Mutation p.P733A 0.13 tolerated(0.08) unknown(0) TCGA-63-5131-01 8 87235224 87235224 G C SLC7A13 Missense_Mutation p.T265R 0.32 deleterious(0) probably_damaging(0.988) TCGA-63-5131-01 8 97251914 97251914 C A MTERFD1 Splice_Site p.X354_splice 0.17 TCGA-63-5131-01 9 123908437 123908437 G A CNTRL Missense_Mutation p.R1121H 0.05 benign(0.004) TCGA-63-5131-01 9 21384719 21384719 G A IFNA2 3'UTR 0.62 TCGA-63-5131-01 9 32436297 32436297 G A ACO1 Missense_Mutation p.A717T 0.05 deleterious(0.03) probably_damaging(0.91) TCGA-63-5131-01 9 35752037 35752037 C T RGP1 Missense_Mutation p.H283Y 0.49 tolerated(1) benign(0.001) TCGA-63-5131-01 9 71094442 71094442 C T PGM5 Missense_Mutation p.A423V 0.34 tolerated(0.1) benign(0.155) TCGA-63-5131-01 9 88633621 88633621 C G NAA35 Missense_Mutation p.S641C 0.23 deleterious(0.01) possibly_damaging(0.848) TCGA-63-5131-01 X 125686402 125686402 C A DCAF12L1 Missense_Mutation p.G64C 0.58 deleterious(0.01) possibly_damaging(0.907) TCGA-63-5131-01 X 128887225 128887225 G A XPNPEP2 Splice_Site p.X369_splice 0.72 TCGA-63-5131-01 X 140994683 140994683 C - MAGEC1 Frame_Shift_Del p.P499Lfs*131 0.44 TCGA-63-5131-01 X 20028895 20028895 C A MAP7D2 Intron 0.54 TCGA-63-5131-01 X 31838129 31838129 C A DMD Missense_Mutation p.Q2424H 0.44 benign(0.064) TCGA-63-5131-01 X 36116911 36116911 G T CHDC2 Missense_Mutation p.A215S 0.64 tolerated(0.54) benign(0.075) TCGA-63-5131-01 X 55103864 55103864 G T PAGE2B Missense_Mutation p.A76S 0.71 tolerated(0.26) probably_damaging(0.998) TCGA-63-5131-01 X 75650397 75650397 G T MAGEE1 Nonsense_Mutation p.E692* 0.62 TCGA-63-5131-01 X 86068269 86068269 T G DACH2 Missense_Mutation p.L509R 0.06 tolerated(0.85) probably_damaging(0.996) TCGA-63-5131-01 X 91132563 91132563 G C PCDH11X Missense_Mutation p.G442R 0.59 deleterious(0) probably_damaging(1) TCGA-63-6202-01 10 104155649 104155649 G T NFKB2 5'UTR 0.23 TCGA-63-6202-01 10 105200258 105200258 A T PDCD11 Missense_Mutation p.S1454C 0.14 deleterious(0.04) possibly_damaging(0.695) TCGA-63-6202-01 10 105209195 105209196 - T CALHM2 Frame_Shift_Ins p.N168Kfs*16 0.29 TCGA-63-6202-01 10 123843094 123843094 G T TACC2 Missense_Mutation p.G360V 0.15 benign(0.151) TCGA-63-6202-01 10 125506412 125506412 C G CPXM2 Missense_Mutation p.R713S 0.14 tolerated(0.6) benign(0.029) TCGA-63-6202-01 10 14563185 14563185 C A FAM107B 3'UTR 0.34 TCGA-63-6202-01 10 18242317 18242317 G T SLC39A12 Missense_Mutation p.G38W 0.19 tolerated(0.1) benign(0.003) TCGA-63-6202-01 10 44104702 44104702 G T ZNF485 Splice_Site p.X51_splice 0.29 TCGA-63-6202-01 10 50953543 50953543 C A OGDHL Splice_Site p.X493_splice 0.12 TCGA-63-6202-01 10 50953930 50953930 C A OGDHL Missense_Mutation p.A464S 0.27 tolerated(0.16) benign(0.364) TCGA-63-6202-01 10 52087052 52087052 T C SGMS1 Missense_Mutation p.I218M 0.23 deleterious(0.05) benign(0.265) TCGA-63-6202-01 10 61831055 61831055 C - ANK3 Frame_Shift_Del p.G3195Afs*42 0.19 TCGA-63-6202-01 10 61832138 61832138 G A ANK3 Missense_Mutation p.A2834V 0.27 benign(0.026) TCGA-63-6202-01 10 61832139 61832139 C A ANK3 Missense_Mutation p.A2834S 0.26 benign(0.001) TCGA-63-6202-01 10 62652698 62652698 C A RHOBTB1 Missense_Mutation p.V118L 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-63-6202-01 10 68526159 68526159 T A CTNNA3 Missense_Mutation p.I382L 0.33 deleterious(0.02) benign(0.031) TCGA-63-6202-01 10 73464789 73464789 A T CDH23 Missense_Mutation p.E544V 0.27 tolerated(0.33) benign(0.008) TCGA-63-6202-01 10 75434657 75434657 C A AGAP5 Silent p.L587L 0.04 TCGA-63-6202-01 10 90490874 90490874 G A LIPK Missense_Mutation p.G120R 0.12 deleterious(0) probably_damaging(0.996) TCGA-63-6202-01 10 97396915 97396915 C A ALDH18A1 Nonsense_Mutation p.G165* 0.15 TCGA-63-6202-01 11 108381393 108381393 C T EXPH5 Missense_Mutation p.R1614K 0.09 tolerated(0.19) benign(0.18) TCGA-63-6202-01 11 118374454 118374454 A G KMT2A Missense_Mutation p.K2616R 0.29 probably_damaging(0.991) TCGA-63-6202-01 11 124135308 124135308 G A OR8G5 Missense_Mutation p.G196S 0.24 tolerated(0.07) possibly_damaging(0.59) TCGA-63-6202-01 11 125359547 125359547 G T FEZ1 Missense_Mutation p.L43I 0.16 tolerated(0.11) benign(0.061) TCGA-63-6202-01 11 125359548 125359548 G T FEZ1 Silent p.S42S 0.16 TCGA-63-6202-01 11 12540006 12540006 C T PARVA Silent p.S368S 0.15 TCGA-63-6202-01 11 128807757 128807757 C A TP53AIP1 5'UTR 0.17 TCGA-63-6202-01 11 134254047 134254047 C T B3GAT1 Missense_Mutation p.G50S 0.24 tolerated_low_confidence(0.34) benign(0.002) TCGA-63-6202-01 11 17141433 17141433 C A PIK3C2A Missense_Mutation p.A916S 0.28 deleterious(0.02) probably_damaging(0.988) TCGA-63-6202-01 11 17450120 17450120 G C ABCC8 Missense_Mutation p.Q639E 0.23 tolerated(0.4) benign(0.015) TCGA-63-6202-01 11 1774901 1774901 C A CTSD Splice_Site p.X358_splice 0.10 TCGA-63-6202-01 11 35547148 35547148 G T PAMR1 5'UTR 0.31 TCGA-63-6202-01 11 36596185 36596185 C T RAG1 Missense_Mutation p.A444V 0.12 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-63-6202-01 11 405988 405988 G A SIGIRR Missense_Mutation p.R381W 0.10 deleterious(0) possibly_damaging(0.582) TCGA-63-6202-01 11 4407416 4407416 C T TRIM21 Missense_Mutation p.G277E 0.20 tolerated(0.06) probably_damaging(0.994) TCGA-63-6202-01 11 55032733 55032733 T A TRIM48 Silent p.S134S 0.23 TCGA-63-6202-01 11 55433515 55433515 G T OR4C6 Missense_Mutation p.E291D 0.24 deleterious_low_confidence(0.03) possibly_damaging(0.64) TCGA-63-6202-01 11 55681351 55681351 T A OR5W2 Missense_Mutation p.K236N 0.21 deleterious(0) probably_damaging(0.939) TCGA-63-6202-01 11 56113545 56113545 G T OR8K1 Missense_Mutation p.A11S 0.15 tolerated_low_confidence(0.79) benign(0.007) TCGA-63-6202-01 11 63672277 63672277 C T MARK2 Missense_Mutation p.P566S 0.20 tolerated(0.15) benign(0.408) TCGA-63-6202-01 11 65620199 65620199 C T SNX32 Silent p.A337A 0.15 TCGA-63-6202-01 11 82868499 82868499 G T PCF11 Silent p.P6P 0.27 TCGA-63-6202-01 11 92616492 92616492 C T FAT3 Silent p.P4290P 0.25 TCGA-63-6202-01 12 109834222 109834222 G T MYO1H Missense_Mutation p.M92I 0.22 deleterious(0.01) benign(0.311) TCGA-63-6202-01 12 110019347 110019347 C T MVK Silent p.C173C 0.20 TCGA-63-6202-01 12 1137166 1137166 C T ERC1 Missense_Mutation p.R33C 0.21 deleterious(0) probably_damaging(0.994) TCGA-63-6202-01 12 119583443 119583443 G C SRRM4 Silent p.G343G 0.29 TCGA-63-6202-01 12 130845880 130845880 G T PIWIL1 Missense_Mutation p.Q607H 0.39 deleterious(0) probably_damaging(1) TCGA-63-6202-01 12 18854646 18854646 C A PLCZ1 Missense_Mutation p.R310I 0.32 tolerated(0.11) possibly_damaging(0.894) TCGA-63-6202-01 12 2027512 2027512 G T CACNA2D4 Missense_Mutation p.A43D 0.45 tolerated_low_confidence(0.09) benign(0.068) TCGA-63-6202-01 12 21711179 21711179 G A GYS2 Silent p.T459T 0.17 TCGA-63-6202-01 12 22812020 22812020 T G ETNK1 Silent p.L252L 0.17 TCGA-63-6202-01 12 25380275 25380275 T A KRAS Missense_Mutation p.Q61H 0.40 deleterious(0) benign(0.371) TCGA-63-6202-01 12 39735383 39735383 C A KIF21A Missense_Mutation p.E615D 0.24 tolerated(0.15) benign(0.002) TCGA-63-6202-01 12 40441918 40441918 T C SLC2A13 Silent p.T217T 0.22 TCGA-63-6202-01 12 50185658 50185658 G C NCKAP5L Silent p.L1323L 0.12 TCGA-63-6202-01 12 52379132 52379132 G T ACVR1B Missense_Mutation p.R420L 0.11 deleterious(0) probably_damaging(0.999) TCGA-63-6202-01 12 52942093 52942093 G T KRT71 Missense_Mutation p.T274N 0.36 deleterious(0) benign(0.008) TCGA-63-6202-01 12 57492632 57492632 T C STAT6 Missense_Mutation p.Y670C 0.23 tolerated(0.13) probably_damaging(0.948) TCGA-63-6202-01 12 6560174 6560174 A T CD27 Nonsense_Mutation p.R218* 0.06 TCGA-63-6202-01 12 67706425 67706425 G A CAND1 Missense_Mutation p.D1170N 0.47 tolerated(0.1) probably_damaging(0.955) TCGA-63-6202-01 12 78225481 78225481 C G NAV3 Missense_Mutation p.S80R 0.41 deleterious_low_confidence(0.01) benign(0.061) TCGA-63-6202-01 12 91348137 91348137 G C CCER1 Missense_Mutation p.S128C 0.08 deleterious(0.01) possibly_damaging(0.788) TCGA-63-6202-01 13 113718715 113718715 G T MCF2L Missense_Mutation p.R196L 0.25 deleterious(0.01) benign(0.165) TCGA-63-6202-01 13 23905162 23905162 T A SACS Missense_Mutation p.S4285C 0.24 benign(0.293) TCGA-63-6202-01 13 42874720 42874720 G T AKAP11 Missense_Mutation p.S613I 0.19 deleterious(0) possibly_damaging(0.851) TCGA-63-6202-01 13 49281661 49281661 G T CYSLTR2 Silent p.S236S 0.26 TCGA-63-6202-01 13 70314552 70314552 T A KLHL1 Silent p.T592T 0.27 TCGA-63-6202-01 13 78208526 78208526 A T SCEL Silent p.G568G 0.26 TCGA-63-6202-01 14 33201840 33201840 G C AKAP6 Intron 0.51 TCGA-63-6202-01 14 50585439 50585439 G T SOS2 Missense_Mutation p.P1208T 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-63-6202-01 14 51190286 51190286 T A NIN 3'Flank 0.10 TCGA-63-6202-01 14 51371147 51371147 G A ABHD12B 3'UTR 0.12 TCGA-63-6202-01 14 60069953 60069953 G A RTN1 Missense_Mutation p.P736S 0.14 deleterious(0) probably_damaging(1) TCGA-63-6202-01 14 64727213 64727213 G T ESR2 Silent p.A302A 0.12 TCGA-63-6202-01 14 67940052 67940052 T A TMEM229B 3'UTR 0.22 TCGA-63-6202-01 14 69262628 69262628 C T ZFP36L1 5'Flank 0.09 TCGA-63-6202-01 14 70517727 70517727 G T SLC8A3 Missense_Mutation p.A710E 0.11 tolerated(0.05) benign(0.222) TCGA-63-6202-01 14 74409390 74409390 G A FAM161B Silent p.I381I 0.12 TCGA-63-6202-01 14 75017963 75017963 C A LTBP2 Missense_Mutation p.G497V 0.29 deleterious(0.03) benign(0.432) TCGA-63-6202-01 14 89656795 89656795 T C FOXN3 Splice_Site p.X249_splice 0.17 TCGA-63-6202-01 14 96779691 96779691 G A ATG2B Missense_Mutation p.L1242F 0.19 deleterious(0) probably_damaging(0.998) TCGA-63-6202-01 15 102312115 102312115 C A RN7SL209P 3'Flank 0.13 TCGA-63-6202-01 15 22368679 22368679 A G OR4M2 Missense_Mutation p.Y35C 0.06 deleterious(0) benign(0.01) TCGA-63-6202-01 15 24921383 24921383 C G NPAP1 Missense_Mutation p.F123L 0.19 tolerated(0.62) benign(0.348) TCGA-63-6202-01 15 27573988 27573988 A T GABRG3 Missense_Mutation p.H176L 0.19 tolerated(0.73) benign(0.433) TCGA-63-6202-01 15 33922197 33922197 A T RYR3 Silent p.P912P 0.23 TCGA-63-6202-01 15 34064229 34064229 G T RYR3 Missense_Mutation p.K2975N 0.23 possibly_damaging(0.552) TCGA-63-6202-01 15 41827134 41827134 C T RPAP1 Splice_Site p.X181_splice 0.13 TCGA-63-6202-01 15 52620125 52620125 G A MYO5A Missense_Mutation p.A1520V 0.18 deleterious(0) benign(0.371) TCGA-63-6202-01 15 52659297 52659297 T G MYO5A Missense_Mutation p.N1031H 0.19 deleterious(0) probably_damaging(0.999) TCGA-63-6202-01 15 56981257 56981257 A G ZNF280D Silent p.P254P 0.18 TCGA-63-6202-01 15 60715913 60715913 T A NARG2 Missense_Mutation p.M957L 0.12 tolerated(0.06) benign(0.001) TCGA-63-6202-01 15 63904582 63904582 C G HERC1 Missense_Mutation p.W4756C 0.23 probably_damaging(0.999) TCGA-63-6202-01 15 68624760 68624760 C A ITGA11 Silent p.V494V 0.35 TCGA-63-6202-01 15 69328164 69328164 G T NOX5 Missense_Mutation p.G359V 0.21 deleterious(0) probably_damaging(0.934) TCGA-63-6202-01 15 74239501 74239501 C T LOXL1 Silent p.C481C 0.12 TCGA-63-6202-01 15 78923422 78923422 T G CHRNB4 Missense_Mutation p.N119H 0.22 deleterious(0) probably_damaging(0.996) TCGA-63-6202-01 15 82507156 82507156 T C EFTUD1 Missense_Mutation p.Q551R 0.20 tolerated(0.47) benign(0.005) TCGA-63-6202-01 15 85400711 85400711 G T ALPK3 Silent p.L1116L 0.18 TCGA-63-6202-01 16 20357448 20357448 C T UMOD Silent p.T394T 0.20 TCGA-63-6202-01 16 23707240 23707240 C A ERN2 Missense_Mutation p.G577W 0.30 deleterious(0) probably_damaging(1) TCGA-63-6202-01 16 3021660 3021660 G A PAQR4 Missense_Mutation p.G178E 0.22 tolerated(0.06) benign(0.392) TCGA-63-6202-01 16 84014678 84014678 C T NECAB2 Silent p.A135A 0.40 TCGA-63-6202-01 16 85839310 85839310 C T COX4I1 Intron 0.45 TCGA-63-6202-01 16 89187245 89187245 G C ACSF3 Missense_Mutation p.R388P 0.21 tolerated(0.05) benign(0.383) TCGA-63-6202-01 17 10348599 10348599 C A MYH4 Missense_Mutation p.Q1750H 0.39 deleterious(0.03) possibly_damaging(0.759) TCGA-63-6202-01 17 21075445 21075445 C T DHRS7B Silent p.R45R 0.41 TCGA-63-6202-01 17 2266300 2266300 G T SGSM2 Nonsense_Mutation p.E182* 0.16 TCGA-63-6202-01 17 27936294 27936294 G T ANKRD13B Splice_Site p.X252_splice 0.14 TCGA-63-6202-01 17 40940793 40940793 C A WNK4 Missense_Mutation p.P712Q 0.44 deleterious(0) unknown(0) TCGA-63-6202-01 17 44895951 44895951 G T WNT3 Missense_Mutation p.L5M 0.70 tolerated(0.23) benign(0.003) TCGA-63-6202-01 17 51902274 51902274 C A KIF2B Missense_Mutation p.A627D 0.40 deleterious(0.03) benign(0.385) TCGA-63-6202-01 17 67519684 67519684 G T MAP2K6 Missense_Mutation p.A189S 0.32 tolerated(0.09) benign(0.007) TCGA-63-6202-01 17 73723315 73723315 G T ITGB4 Missense_Mutation p.E40D 0.57 tolerated(0.22) probably_damaging(0.91) TCGA-63-6202-01 17 7578457 7578457 C A TP53 Missense_Mutation p.R158L 0.38 deleterious(0) probably_damaging(0.986) TCGA-63-6202-01 17 76083009 76083009 A - TNRC6C Frame_Shift_Del p.K1210Sfs*58 0.32 TCGA-63-6202-01 17 76497534 76497534 C A DNAH17-AS1 3'UTR 0.52 TCGA-63-6202-01 17 76528694 76528694 G A DNAH17 Missense_Mutation p.T995M 0.15 benign(0.01) TCGA-63-6202-01 18 13104999 13104999 G C CEP192 Missense_Mutation p.G2323A 0.04 deleterious(0.01) probably_damaging(0.989) TCGA-63-6202-01 18 29027803 29027803 G T DSG3 5'UTR 0.20 TCGA-63-6202-01 18 34174837 34174837 G T FHOD3 Missense_Mutation p.V232F 0.08 deleterious(0) possibly_damaging(0.461) TCGA-63-6202-01 18 34205705 34205705 C G FHOD3 Missense_Mutation p.R397G 0.25 tolerated(0.25) benign(0.015) TCGA-63-6202-01 18 50977006 50977006 C A DCC Silent p.T1122T 0.07 TCGA-63-6202-01 18 61310651 61310651 C T SERPINB4 Missense_Mutation p.S54N 0.10 tolerated(0.06) benign(0.001) TCGA-63-6202-01 18 72183485 72183485 G - CNDP2 Frame_Shift_Del p.W309Cfs*23 0.29 TCGA-63-6202-01 19 10088368 10088368 C T COL5A3 Missense_Mutation p.G1010S 0.10 possibly_damaging(0.855) TCGA-63-6202-01 19 10668287 10668287 G C KRI1 Missense_Mutation p.P526A 0.14 deleterious(0) probably_damaging(0.911) TCGA-63-6202-01 19 14046575 14046575 C T PODNL1 Missense_Mutation p.M158I 0.33 deleterious(0.01) benign(0.029) TCGA-63-6202-01 19 14952633 14952633 C T OR7A10 Silent p.E19E 0.09 TCGA-63-6202-01 19 19243982 19243982 G A TMEM161A Missense_Mutation p.R49W 0.19 deleterious(0.01) benign(0.056) TCGA-63-6202-01 19 22574571 22574571 G T ZNF98 Missense_Mutation p.P489H 0.10 deleterious(0.02) possibly_damaging(0.787) TCGA-63-6202-01 19 23926986 23926986 C A ZNF681 Missense_Mutation p.G456W 0.27 deleterious(0) probably_damaging(0.996) TCGA-63-6202-01 19 30303902 30303902 G T CCNE1 Missense_Mutation p.M46I 0.31 tolerated(0.91) benign(0) TCGA-63-6202-01 19 3113400 3113400 A G GNA11 Missense_Mutation p.I132V 0.26 tolerated(0.13) benign(0.006) TCGA-63-6202-01 19 31767966 31767966 G T TSHZ3 Silent p.A911A 0.22 TCGA-63-6202-01 19 31770449 31770449 G C TSHZ3 Missense_Mutation p.R84G 0.15 deleterious(0.01) possibly_damaging(0.87) TCGA-63-6202-01 19 36033826 36033826 T A GAPDHS Intron 0.32 TCGA-63-6202-01 19 39735108 39735108 G C IFNL3 Missense_Mutation p.C69W 0.32 tolerated(0.33) benign(0) TCGA-63-6202-01 19 40316498 40316498 C A DYRK1B Missense_Mutation p.A583S 0.21 tolerated_low_confidence(0.5) benign(0.161) TCGA-63-6202-01 19 40876045 40876045 G A PLD3 Silent p.Q193Q 0.15 TCGA-63-6202-01 19 42557753 42557753 C A GRIK5 Splice_Site p.X423_splice 0.46 TCGA-63-6202-01 19 43865645 43865645 T A CD177 3'UTR 0.18 TCGA-63-6202-01 19 44011035 44011035 G A ETHE1 Silent p.N244N 0.33 TCGA-63-6202-01 19 46308014 46308014 G A RSPH6A Silent p.V383V 0.59 TCGA-63-6202-01 19 49004555 49004555 C T LMTK3 Missense_Mutation p.R358H 0.19 probably_damaging(0.92) TCGA-63-6202-01 19 52004699 52004699 C T SIGLEC12 Missense_Mutation p.G97R 0.32 deleterious(0.03) probably_damaging(0.991) TCGA-63-6202-01 19 52004757 52004757 G TGTT SIGLEC12 In_Frame_Ins p.T78dup 0.32 TCGA-63-6202-01 19 53050785 53050785 T A ZNF808 Missense_Mutation p.D28E 0.17 deleterious(0) probably_damaging(0.983) TCGA-63-6202-01 19 54783877 54783877 C A LILRB2 Missense_Mutation p.G42W 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-63-6202-01 19 55144079 55144079 G T LILRB1 Missense_Mutation p.G276W 0.39 deleterious(0) probably_damaging(0.988) TCGA-63-6202-01 19 56539855 56539855 A G NLRP5 Silent p.A752A 0.19 TCGA-63-6202-01 19 5733877 5733877 C G CATSPERD Missense_Mutation p.P96R 0.24 deleterious(0) probably_damaging(1) TCGA-63-6202-01 19 57802733 57802733 G A ZNF460 Missense_Mutation p.S275N 0.40 deleterious(0.04) benign(0.085) TCGA-63-6202-01 19 58564832 58564832 T G ZSCAN1 Missense_Mutation p.W214G 0.44 tolerated(0.4) benign(0.354) TCGA-63-6202-01 19 58579628 58579628 G T ZNF135 Silent p.S616S 0.50 TCGA-63-6202-01 19 8996331 8996331 G C MUC16 Silent p.L13747L 0.17 TCGA-63-6202-01 19 9069583 9069583 G T MUC16 Missense_Mutation p.L5955I 0.10 unknown(0) TCGA-63-6202-01 19 9070657 9070657 C A MUC16 Missense_Mutation p.V5597L 0.26 unknown(0) TCGA-63-6202-01 19 9073626 9073626 C A MUC16 Missense_Mutation p.S4607I 0.22 unknown(0) TCGA-63-6202-01 19 9453161 9453161 G A ZNF559 Missense_Mutation p.R345Q 0.16 tolerated(0.11) possibly_damaging(0.705) TCGA-63-6202-01 1 110200278 110200278 C T GSTM4 Missense_Mutation p.R82C 0.20 deleterious(0.01) possibly_damaging(0.865) TCGA-63-6202-01 1 114454011 114454011 C T DCLRE1B Missense_Mutation p.P266L 0.46 deleterious(0) probably_damaging(0.992) TCGA-63-6202-01 1 146765333 146765333 C G CHD1L Silent p.V811V 0.06 TCGA-63-6202-01 1 152187683 152187683 C T HRNR Missense_Mutation p.G2141E 0.03 unknown(0) TCGA-63-6202-01 1 152277980 152277980 G T FLG Missense_Mutation p.H3128N 0.21 unknown(0) TCGA-63-6202-01 1 152284451 152284451 G A FLG Missense_Mutation p.R971C 0.03 probably_damaging(0.957) TCGA-63-6202-01 1 156640164 156640164 G T NES Silent p.P1272P 0.34 TCGA-63-6202-01 1 15833532 15833532 G A CASP9 Silent p.L164L 0.18 TCGA-63-6202-01 1 158576908 158576908 G T OR10Z1 Missense_Mutation p.R227M 0.37 deleterious(0.01) possibly_damaging(0.695) TCGA-63-6202-01 1 158590127 158590127 C A SPTA1 Missense_Mutation p.D2084Y 0.30 tolerated(0.05) probably_damaging(0.975) TCGA-63-6202-01 1 158622439 158622439 G T SPTA1 Missense_Mutation p.R1065S 0.22 tolerated(0.59) benign(0.097) TCGA-63-6202-01 1 16721555 16721555 G A SZRD1 Missense_Mutation p.E127K 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-63-6202-01 1 175292450 175292450 A T TNR 3'UTR 0.34 TCGA-63-6202-01 1 179452290 179452290 G T AXDND1 Missense_Mutation p.M675I 0.31 deleterious(0.01) benign(0.107) TCGA-63-6202-01 1 180013242 180013242 A T CEP350 Missense_Mutation p.H1519L 0.54 benign(0.055) TCGA-63-6202-01 1 186270769 186270769 G A PRG4 Missense_Mutation p.R82K 0.09 probably_damaging(0.996) TCGA-63-6202-01 1 197298053 197298053 C T CRB1 Missense_Mutation p.A191V 0.37 tolerated(1) benign(0.009) TCGA-63-6202-01 1 203192314 203192314 G T CHIT1 Missense_Mutation p.P185Q 0.33 deleterious(0) probably_damaging(0.978) TCGA-63-6202-01 1 207646467 207646467 C G CR2 Missense_Mutation p.Q641E 0.33 tolerated(0.26) benign(0.044) TCGA-63-6202-01 1 209768392 209768392 A G CAMK1G Missense_Mutation p.T22A 0.04 tolerated(0.36) benign(0.06) TCGA-63-6202-01 1 211192568 211192568 G T KCNH1 Missense_Mutation p.Q197K 0.28 tolerated(0.08) benign(0.379) TCGA-63-6202-01 1 228362694 228362694 G T IBA57 Missense_Mutation p.D215Y 0.24 deleterious(0) possibly_damaging(0.702) TCGA-63-6202-01 1 228584678 228584678 C A TRIM11 Nonsense_Mutation p.G277* 0.36 TCGA-63-6202-01 1 237919649 237919649 C A RYR2 Missense_Mutation p.A3736E 0.32 possibly_damaging(0.907) TCGA-63-6202-01 1 240255947 240255947 G T FMN2 Missense_Mutation p.D180Y 0.17 unknown(0) TCGA-63-6202-01 1 241964483 241964483 T A WDR64 Missense_Mutation p.L1071Q 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-63-6202-01 1 243329005 243329005 G T CEP170 Missense_Mutation p.Q753K 0.07 tolerated(0.13) benign(0.002) TCGA-63-6202-01 1 248039277 248039277 G C TRIM58 Missense_Mutation p.G316A 0.09 tolerated(0.18) possibly_damaging(0.483) TCGA-63-6202-01 1 248085002 248085002 C A OR2T8 Missense_Mutation p.S228Y 0.21 deleterious(0) possibly_damaging(0.883) TCGA-63-6202-01 1 248112246 248112246 C G OR2L8 Silent p.L29L 0.24 TCGA-63-6202-01 1 248263294 248263294 T C OR2L13 Missense_Mutation p.L206P 0.31 deleterious(0) probably_damaging(0.994) TCGA-63-6202-01 1 248402623 248402623 G C OR2M4 Missense_Mutation p.Q131H 0.30 tolerated(0.15) benign(0.401) TCGA-63-6202-01 1 248436434 248436434 G T OR2T33 Missense_Mutation p.S228Y 0.16 deleterious(0) possibly_damaging(0.883) TCGA-63-6202-01 1 248436862 248436862 G T OR2T33 Silent p.T85T 0.12 TCGA-63-6202-01 1 27092947 27092947 G C ARID1A Splice_Site p.X960_splice 0.36 TCGA-63-6202-01 1 27092948 27092948 G T ARID1A Missense_Mutation p.G960V 0.35 unknown(0) TCGA-63-6202-01 1 27682928 27682928 C T MAP3K6 Silent p.Q1196Q 0.39 TCGA-63-6202-01 1 32740636 32740636 A T LCK Missense_Mutation p.D77V 0.15 deleterious(0.02) possibly_damaging(0.659) TCGA-63-6202-01 1 40767500 40767500 C A COL9A2 Silent p.G618G 0.44 TCGA-63-6202-01 1 44056825 44056825 G A PTPRF Missense_Mutation p.G378S 0.41 tolerated(0.14) probably_damaging(1) TCGA-63-6202-01 1 44072012 44072012 G A PTPRF Silent p.P1195P 0.42 TCGA-63-6202-01 1 62672649 62672649 G T L1TD1 Missense_Mutation p.G117W 0.38 deleterious(0) unknown(0) TCGA-63-6202-01 1 62740445 62740445 G C KANK4 Missense_Mutation p.P111A 0.24 tolerated(0.21) benign(0.003) TCGA-63-6202-01 1 63018566 63018566 C G DOCK7 Missense_Mutation p.G868A 0.35 tolerated(0.32) benign(0.001) TCGA-63-6202-01 1 70502271 70502271 C T LRRC7 Missense_Mutation p.A713V 0.34 tolerated_low_confidence(0.15) benign(0.09) TCGA-63-6202-01 1 71544230 71544230 T - ZRANB2 Frame_Shift_Del p.K43Rfs*2 0.16 TCGA-63-6202-01 1 74648482 74648482 G A LRRIQ3 Missense_Mutation p.H105Y 0.42 deleterious(0) probably_damaging(0.999) TCGA-63-6202-01 1 79002362 79002362 C T PTGFR Missense_Mutation p.A357V 0.17 deleterious_low_confidence(0.05) benign(0.004) TCGA-63-6202-01 20 1551566 1551566 C A SIRPB1 Missense_Mutation p.R323S 0.44 deleterious(0.04) probably_damaging(0.933) TCGA-63-6202-01 20 20340853 20340853 G T C20orf26 Splice_Site p.X1172_splice 0.16 TCGA-63-6202-01 20 20340854 20340854 G T C20orf26 Nonsense_Mutation p.E1172* 0.16 TCGA-63-6202-01 20 33516668 33516668 G T GSS Missense_Mutation p.A463E 0.14 deleterious(0) probably_damaging(0.934) TCGA-63-6202-01 20 3655185 3655185 C G ADAM33 Missense_Mutation p.G189A 0.24 tolerated(0.83) benign(0.04) TCGA-63-6202-01 20 37580988 37580988 A T FAM83D Missense_Mutation p.N558I 0.21 deleterious(0.01) possibly_damaging(0.757) TCGA-63-6202-01 20 41419868 41419868 G T PTPRT Silent p.L151L 0.20 TCGA-63-6202-01 20 42089788 42089788 G A SRSF6 3'UTR 0.16 TCGA-63-6202-01 20 43113110 43113110 T C TTPAL Silent p.S193S 0.17 TCGA-63-6202-01 20 48604551 48604551 C - SNAI1 Frame_Shift_Del p.H252Tfs*28 0.10 TCGA-63-6202-01 20 9382159 9382159 C A PLCB4 Missense_Mutation p.H511Q 0.41 tolerated(0.28) benign(0.23) TCGA-63-6202-01 21 10862937 10862937 G T IGHV1OR21-1 Missense_Mutation p.S78I 0.09 tolerated(0.26) benign(0.015) TCGA-63-6202-01 21 39086791 39086791 C G KCNJ6 Silent p.R223R 0.14 TCGA-63-6202-01 21 42807802 42807802 G A MX1 Silent p.K48K 0.23 TCGA-63-6202-01 22 18210325 18210325 G T BCL2L13 3'UTR 0.51 TCGA-63-6202-01 22 32215144 32215144 C T DEPDC5 Silent p.F601F 0.25 TCGA-63-6202-01 22 42605710 42605710 C A TCF20 Missense_Mutation p.V1868F 0.29 probably_damaging(1) TCGA-63-6202-01 22 44031098 44031098 T C EFCAB6 Splice_Site p.X662_splice 0.28 TCGA-63-6202-01 22 50547272 50547272 C T MOV10L1 Nonsense_Mutation p.R248* 0.09 TCGA-63-6202-01 22 51143492 51143492 G T SHANK3 Missense_Mutation p.R682M 0.31 probably_damaging(0.994) TCGA-63-6202-01 22 51143493 51143493 G T SHANK3 Missense_Mutation p.R682S 0.30 probably_damaging(0.995) TCGA-63-6202-01 2 102625053 102625053 G T IL1R2 Missense_Mutation p.V6L 0.08 tolerated(0.34) benign(0.008) TCGA-63-6202-01 2 103090139 103090139 G A SLC9A4 5'UTR 0.27 TCGA-63-6202-01 2 11426670 11426670 G A ROCK2 Nonsense_Mutation p.Q107* 0.06 TCGA-63-6202-01 2 120204407 120204407 G A SCTR Silent p.I356I 0.12 TCGA-63-6202-01 2 130832686 130832686 G T POTEF Missense_Mutation p.H787N 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.462) TCGA-63-6202-01 2 131098596 131098596 C A CCDC115 Missense_Mutation p.K105N 0.35 tolerated(0.07) probably_damaging(0.917) TCGA-63-6202-01 2 136570498 136570498 G C LCT Missense_Mutation p.A579G 0.30 deleterious(0.02) probably_damaging(1) TCGA-63-6202-01 2 138400099 138400099 G T THSD7B Nonsense_Mutation p.G1284* 0.07 TCGA-63-6202-01 2 139428437 139428437 T A NXPH2 3'UTR 0.30 TCGA-63-6202-01 2 141243020 141243020 G T LRP1B Missense_Mutation p.T3106K 0.26 benign(0.403) TCGA-63-6202-01 2 145157138 145157138 C A ZEB2 Missense_Mutation p.C539F 0.30 deleterious(0.02) probably_damaging(0.998) TCGA-63-6202-01 2 168106300 168106300 G T XIRP2 Missense_Mutation p.V2800F 0.14 benign(0.072) TCGA-63-6202-01 2 179604804 179604805 - T TTN Frame_Shift_Ins p.G4386Rfs*32 0.15 TCGA-63-6202-01 2 207172970 207172970 G A ZDBF2 Missense_Mutation p.G1240S 0.10 tolerated(0.3) benign(0.001) TCGA-63-6202-01 2 209141537 209141537 A G PIKFYVE Missense_Mutation p.M142V 0.14 deleterious(0.01) possibly_damaging(0.718) TCGA-63-6202-01 2 209190212 209190212 A T PIKFYVE Missense_Mutation p.I893F 0.17 tolerated_low_confidence(0.06) benign(0.056) TCGA-63-6202-01 2 228996729 228996729 G C SPHKAP Missense_Mutation p.S35R 0.08 deleterious(0) possibly_damaging(0.767) TCGA-63-6202-01 2 32477621 32477621 G T NLRC4 Nonsense_Mutation p.C43* 0.09 TCGA-63-6202-01 2 60688573 60688573 C T BCL11A Missense_Mutation p.E492K 0.12 deleterious(0.03) benign(0.305) TCGA-63-6202-01 2 74425778 74425778 A G MTHFD2 Missense_Mutation p.T4A 0.26 tolerated_low_confidence(0.57) unknown(0) TCGA-63-6202-01 2 77745779 77745779 G T LRRTM4 Missense_Mutation p.P406T 0.08 tolerated(0.25) benign(0.002) TCGA-63-6202-01 2 79312345 79312345 G T REG1B Missense_Mutation p.N166K 0.36 deleterious(0.01) benign(0.195) TCGA-63-6202-01 2 80620418 80620418 T C CTNNA2 Splice_Site p.X379_splice 0.08 TCGA-63-6202-01 2 89049497 89049497 G T RPIA Splice_Site p.X280_splice 0.26 TCGA-63-6202-01 2 89309902 89309902 G T IGKV1-9 Missense_Mutation p.P18Q 0.07 tolerated(0.09) benign(0.114) TCGA-63-6202-01 2 89339774 89339774 G T IGKV1-12 Missense_Mutation p.L100M 0.39 deleterious(0.05) possibly_damaging(0.754) TCGA-63-6202-01 2 90212099 90212099 C A IGKV3D-11 Missense_Mutation p.P64H 0.07 deleterious(0) probably_damaging(1) TCGA-63-6202-01 2 98349354 98349354 C T ZAP70 Missense_Mutation p.P191L 0.09 tolerated(0.18) possibly_damaging(0.672) TCGA-63-6202-01 3 100962939 100962939 C G IMPG2 Missense_Mutation p.D746H 0.41 deleterious(0.02) benign(0.024) TCGA-63-6202-01 3 121206386 121206386 G A POLQ Missense_Mutation p.P1798S 0.40 tolerated(0.58) benign(0.014) TCGA-63-6202-01 3 121973028 121973028 G T CASR 5'UTR 0.39 TCGA-63-6202-01 3 123166600 123166600 G T ADCY5 Missense_Mutation p.P265T 0.43 tolerated(0.66) benign(0.002) TCGA-63-6202-01 3 130289907 130289907 G T COL6A6 Missense_Mutation p.G883C 0.43 deleterious(0) probably_damaging(1) TCGA-63-6202-01 3 130613492 130613492 A G ATP2C1 Intron 0.43 TCGA-63-6202-01 3 131208878 131208878 G A MRPL3 Missense_Mutation p.P172L 0.41 deleterious(0.01) probably_damaging(0.973) TCGA-63-6202-01 3 13860570 13860570 C A WNT7A Missense_Mutation p.M307I 0.43 deleterious(0.01) possibly_damaging(0.826) TCGA-63-6202-01 3 138724604 138724604 C A PRR23A Missense_Mutation p.M169I 0.46 tolerated(0.07) benign(0.389) TCGA-63-6202-01 3 1415727 1415727 C A CNTN6 Missense_Mutation p.P689T 0.41 deleterious(0.01) benign(0.19) TCGA-63-6202-01 3 147130324 147130324 C A ZIC1 Nonsense_Mutation p.C334* 0.26 TCGA-63-6202-01 3 159606684 159606684 A G IQCJ-SCHIP1 Missense_Mutation p.I500V 0.34 tolerated(0.77) benign(0.047) TCGA-63-6202-01 3 164757675 164757675 C A SI Missense_Mutation p.Q748H 0.39 deleterious(0.04) benign(0.357) TCGA-63-6202-01 3 164764763 164764763 T A SI Missense_Mutation p.I585F 0.22 deleterious(0) probably_damaging(0.997) TCGA-63-6202-01 3 167248976 167248976 C T WDR49 Silent p.E363E 0.26 TCGA-63-6202-01 3 172642054 172642054 T C SPATA16 Missense_Mutation p.T428A 0.42 deleterious(0.04) benign(0.388) TCGA-63-6202-01 3 173997368 173997368 G T NLGN1 Missense_Mutation p.C526F 0.05 tolerated(0.08) probably_damaging(0.997) TCGA-63-6202-01 3 183822014 183822014 G C HTR3E Missense_Mutation p.E108D 0.08 tolerated(0.61) benign(0.008) TCGA-63-6202-01 3 186947550 186947550 A G MASP1 3'Flank 0.34 TCGA-63-6202-01 3 192980878 192980878 G T HRASLS Missense_Mutation p.D192Y 0.29 deleterious(0) probably_damaging(1) TCGA-63-6202-01 3 30713392 30713392 A G TGFBR2 Silent p.T264T 0.49 TCGA-63-6202-01 3 42754710 42754710 C T CCDC13 Missense_Mutation p.R606H 0.34 deleterious(0.03) benign(0.109) TCGA-63-6202-01 3 49847489 49847489 T A UBA7 Silent p.S587S 0.43 TCGA-63-6202-01 3 50231970 50231970 A G GNAT1 Missense_Mutation p.I249V 0.23 deleterious(0.03) probably_damaging(0.994) TCGA-63-6202-01 3 52777368 52777368 C A NEK4 Missense_Mutation p.Q668H 0.37 deleterious(0) probably_damaging(0.928) TCGA-63-6202-01 3 52818337 52818337 C A ITIH1 Silent p.L417L 0.41 TCGA-63-6202-01 3 62385004 62385004 T A CADPS 3'UTR 0.64 TCGA-63-6202-01 3 64085468 64085468 C A PRICKLE2 Missense_Mutation p.Q598H 0.23 tolerated(0.13) possibly_damaging(0.681) TCGA-63-6202-01 3 77626709 77626709 G T ROBO2 Missense_Mutation p.V774F 0.27 deleterious(0.02) benign(0.013) TCGA-63-6202-01 3 97251212 97251212 A T EPHA6 Silent p.G737G 0.43 TCGA-63-6202-01 3 98309859 98309859 C A CPOX Missense_Mutation p.D233Y 0.14 deleterious(0.01) probably_damaging(0.988) TCGA-63-6202-01 4 106819134 106819136 CGC - NPNT In_Frame_Del p.R50del 0.14 TCGA-63-6202-01 4 128605626 128605626 A G INTU Missense_Mutation p.Y415C 0.17 deleterious(0) probably_damaging(0.993) TCGA-63-6202-01 4 167810281 167810281 C A SPOCK3 Missense_Mutation p.A200S 0.16 tolerated(0.54) benign(0.232) TCGA-63-6202-01 4 183601758 183601758 A T TENM3 Missense_Mutation p.S568C 0.14 deleterious(0.02) possibly_damaging(0.869) TCGA-63-6202-01 4 46312252 46312252 C T GABRA2 Missense_Mutation p.C166Y 0.19 deleterious(0) probably_damaging(0.976) TCGA-63-6202-01 4 46737132 46737132 G C COX7B2 Missense_Mutation p.S26R 0.05 tolerated(0.13) possibly_damaging(0.783) TCGA-63-6202-01 4 47462294 47462294 C T COMMD8 Missense_Mutation p.G30D 0.12 deleterious(0.01) probably_damaging(0.988) TCGA-63-6202-01 4 47857075 47857075 C A NFXL1 Splice_Site p.X807_splice 0.27 TCGA-63-6202-01 4 47939383 47939383 G A CNGA1 Silent p.V445V 0.05 TCGA-63-6202-01 4 54011748 54011748 C A SCFD2 Missense_Mutation p.S438I 0.13 deleterious(0.03) possibly_damaging(0.751) TCGA-63-6202-01 4 5699345 5699345 C A EVC2 Silent p.V86V 0.09 TCGA-63-6202-01 4 619461 619461 C A PDE6B Missense_Mutation p.P16T 0.07 deleterious(0.01) probably_damaging(0.91) TCGA-63-6202-01 4 69798351 69798352 - T UGT2A3 Frame_Shift_Ins p.Q331Tfs*23 0.25 TCGA-63-6202-01 4 7056326 7056326 G C TADA2B Missense_Mutation p.E270Q 0.06 tolerated(0.08) possibly_damaging(0.471) TCGA-63-6202-01 4 843832 843832 C A GAK Nonsense_Mutation p.E1228* 0.52 TCGA-63-6202-01 4 8602955 8602955 G T CPZ Missense_Mutation p.S76I 0.47 deleterious(0) probably_damaging(0.998) TCGA-63-6202-01 5 114603489 114603489 T C CCDC112 3'UTR 0.27 TCGA-63-6202-01 5 121412588 121412588 C A LOX Missense_Mutation p.S247I 0.28 deleterious(0.02) probably_damaging(0.972) TCGA-63-6202-01 5 127624178 127624178 A T FBN2 Missense_Mutation p.C2237S 0.08 deleterious(0.01) possibly_damaging(0.904) TCGA-63-6202-01 5 132200015 132200015 C A GDF9 Missense_Mutation p.V71F 0.35 deleterious(0.01) benign(0.105) TCGA-63-6202-01 5 140261956 140261956 G A PCDHA13 Missense_Mutation p.V35I 0.36 tolerated_low_confidence(0.11) benign(0.104) TCGA-63-6202-01 5 140735556 140735556 C T PCDHGA4 Silent p.T263T 0.16 TCGA-63-6202-01 5 145979881 145979881 C A PPP2R2B Missense_Mutation p.M314I 0.39 deleterious(0) possibly_damaging(0.451) TCGA-63-6202-01 5 147486684 147486684 G T SPINK5 Missense_Mutation p.G522C 0.20 deleterious(0) probably_damaging(1) TCGA-63-6202-01 5 149439324 149439324 G T CSF1R Missense_Mutation p.Q691K 0.42 tolerated(0.73) benign(0.403) TCGA-63-6202-01 5 149772327 149772327 G A TCOF1 Missense_Mutation p.E1192K 0.36 deleterious(0) probably_damaging(0.911) TCGA-63-6202-01 5 153407821 153407821 C - FAM114A2 Frame_Shift_Del p.G173Vfs*5 0.13 TCGA-63-6202-01 5 156590666 156590666 C G FAM71B Missense_Mutation p.A204P 0.29 deleterious(0.04) benign(0.004) TCGA-63-6202-01 5 156915440 156915440 G T ADAM19 Missense_Mutation p.P795T 0.36 tolerated(0.06) possibly_damaging(0.732) TCGA-63-6202-01 5 15936724 15936724 A T FBXL7 Missense_Mutation p.H302L 0.08 tolerated(0.27) possibly_damaging(0.863) TCGA-63-6202-01 5 167589657 167589657 C A TENM2 Missense_Mutation p.L822M 0.18 tolerated(0.07) benign(0.196) TCGA-63-6202-01 5 169461446 169461446 G T DOCK2 Missense_Mutation p.V1171L 0.20 deleterious(0.02) benign(0.011) TCGA-63-6202-01 5 176764785 176764785 C T LMAN2 Silent p.G145G 0.09 TCGA-63-6202-01 5 178392666 178392666 T A ZNF454 Missense_Mutation p.F421I 0.54 deleterious(0) probably_damaging(0.951) TCGA-63-6202-01 5 19747089 19747089 C A CDH18 Missense_Mutation p.G162V 0.30 deleterious(0) probably_damaging(0.998) TCGA-63-6202-01 5 19747090 19747090 C T CDH18 Missense_Mutation p.G162R 0.30 deleterious(0) probably_damaging(0.999) TCGA-63-6202-01 5 21765114 21765114 G T CDH12 Silent p.A496A 0.14 TCGA-63-6202-01 5 23527405 23527405 C A PRDM9 Silent p.L736L 0.44 TCGA-63-6202-01 5 40955528 40955528 G T C7 Missense_Mutation p.R378I 0.32 tolerated(0.33) benign(0.002) TCGA-63-6202-01 5 6312505 6312505 T C CTD-2324F15.2 RNA 0.36 TCGA-63-6202-01 5 64913946 64913946 G A TRIM23 Missense_Mutation p.P73L 0.38 deleterious(0) possibly_damaging(0.726) TCGA-63-6202-01 5 850700 850700 C A ZDHHC11 Silent p.G6G 0.12 TCGA-63-6202-01 5 90041472 90041472 G A GPR98 Missense_Mutation p.D3612N 0.26 probably_damaging(0.989) TCGA-63-6202-01 6 116756865 116756865 A T DSE Nonsense_Mutation p.R412* 0.09 TCGA-63-6202-01 6 123892207 123892207 C T TRDN Silent p.V31V 0.27 TCGA-63-6202-01 6 127912764 127912764 C A C6orf58 Silent p.S330S 0.26 TCGA-63-6202-01 6 130761578 130761578 C A TMEM200A Missense_Mutation p.T4N 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-63-6202-01 6 131900371 131900371 T A ARG1 Missense_Mutation p.V92E 0.26 deleterious(0) probably_damaging(0.979) TCGA-63-6202-01 6 132891689 132891689 G T TAAR6 Missense_Mutation p.A77S 0.28 deleterious(0.02) possibly_damaging(0.881) TCGA-63-6202-01 6 142409428 142409428 T A NMBR Missense_Mutation p.Q123L 0.37 deleterious(0) probably_damaging(0.986) TCGA-63-6202-01 6 15496845 15496845 G T JARID2 Silent p.A463A 0.43 TCGA-63-6202-01 6 165848810 165848810 G T PDE10A Missense_Mutation p.P151H 0.19 deleterious(0) probably_damaging(0.983) TCGA-63-6202-01 6 165848811 165848811 G T PDE10A Missense_Mutation p.P151T 0.19 tolerated(0.07) probably_damaging(0.914) TCGA-63-6202-01 6 28543242 28543242 G A SCAND3 Missense_Mutation p.P414S 0.16 tolerated_low_confidence(0.07) benign(0.009) TCGA-63-6202-01 6 29080239 29080239 C T OR2J3 Missense_Mutation p.S191L 0.09 deleterious(0) possibly_damaging(0.796) TCGA-63-6202-01 6 29365010 29365010 T C OR12D2 Silent p.D178D 0.10 TCGA-63-6202-01 6 29641277 29641277 C A ZFP57 Missense_Mutation p.S204I 0.09 tolerated(0.07) benign(0.149) TCGA-63-6202-01 6 30680026 30680026 C - MDC1 Frame_Shift_Del p.V565Yfs*3 0.12 TCGA-63-6202-01 6 31079265 31079265 C A C6orf15 Missense_Mutation p.G291C 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-63-6202-01 6 34826796 34826796 C A UHRF1BP1 Missense_Mutation p.P888H 0.14 tolerated(0.06) possibly_damaging(0.839) TCGA-63-6202-01 6 35392637 35392637 C T PPARD Intron 0.41 TCGA-63-6202-01 6 4099236 4099236 G A C6orf201 Missense_Mutation p.E30K 0.47 tolerated(0.09) probably_damaging(0.981) TCGA-63-6202-01 6 41243864 41243864 T A TREM1 Nonstop_Mutation p.*235Lext*27 0.10 TCGA-63-6202-01 6 4131020 4131020 G T ECI2 Missense_Mutation p.A98D 0.40 tolerated(0.12) benign(0.03) TCGA-63-6202-01 6 43040989 43040989 G T KLC4 Missense_Mutation p.G571V 0.33 tolerated_low_confidence(0.07) benign(0.083) TCGA-63-6202-01 6 44122607 44122607 A G TMEM63B Missense_Mutation p.E829G 0.26 deleterious(0) probably_damaging(0.997) TCGA-63-6202-01 6 47678598 47678598 C A GPR115 Missense_Mutation p.S92R 0.43 deleterious(0) probably_damaging(0.998) TCGA-63-6202-01 6 47846323 47846323 G T PTCHD4 Missense_Mutation p.Q753K 0.05 tolerated(0.22) benign(0.001) TCGA-63-6202-01 6 56469667 56469667 G A DST Intron 0.06 TCGA-63-6202-01 6 70981368 70981368 A G COL9A1 Missense_Mutation p.V378A 0.20 benign(0.268) TCGA-63-6202-01 7 100459495 100459495 G T SLC12A9 Missense_Mutation p.G558V 0.20 deleterious(0) probably_damaging(0.993) TCGA-63-6202-01 7 126173297 126173297 C A GRM8 Missense_Mutation p.W713C 0.16 deleterious(0) probably_damaging(1) TCGA-63-6202-01 7 127253856 127253856 C A PAX4 Silent p.R164R 0.23 TCGA-63-6202-01 7 130038840 130038840 C A CEP41 Missense_Mutation p.K338N 0.22 tolerated(0.12) benign(0.08) TCGA-63-6202-01 7 138862969 138862969 C T TTC26 Missense_Mutation p.P360L 0.24 deleterious(0.03) benign(0.323) TCGA-63-6202-01 7 142099526 142099526 G T TRBV7-8 Silent p.S92S 0.16 TCGA-63-6202-01 7 142168385 142168385 C - TRBV5-4 Frame_Shift_Del p.S113Tfs*? 0.15 TCGA-63-6202-01 7 142724074 142724074 C A OR9A2 Missense_Mutation p.C49F 0.13 tolerated(0.14) possibly_damaging(0.588) TCGA-63-6202-01 7 144345919 144345919 C A TPK1 Missense_Mutation p.R80I 0.16 tolerated(0.42) benign(0.028) TCGA-63-6202-01 7 146825794 146825794 G T CNTNAP2 Nonsense_Mutation p.G317* 0.15 TCGA-63-6202-01 7 146825795 146825795 G T CNTNAP2 Missense_Mutation p.G317V 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-63-6202-01 7 148288214 148288214 G A C7orf33 Missense_Mutation p.R66K 0.23 deleterious_low_confidence(0) benign(0.14) TCGA-63-6202-01 7 154561142 154561142 C A DPP6 Missense_Mutation p.T300K 0.15 tolerated(0.05) benign(0.192) TCGA-63-6202-01 7 21940678 21940678 C G DNAH11 Missense_Mutation p.L4460V 0.18 benign(0.104) TCGA-63-6202-01 7 23205373 23205373 C T KLHL7 Silent p.C331C 0.32 TCGA-63-6202-01 7 31378677 31378677 T A NEUROD6 Missense_Mutation p.D69V 0.17 deleterious(0.01) benign(0.116) TCGA-63-6202-01 7 48314352 48314352 A G ABCA13 Missense_Mutation p.S1697G 0.35 benign(0.383) TCGA-63-6202-01 7 53103840 53103840 G A POM121L12 Missense_Mutation p.R159H 0.34 tolerated(0.15) probably_damaging(0.923) TCGA-63-6202-01 7 55750309 55750309 G C RNU6-389P 5'Flank 0.23 TCGA-63-6202-01 7 57187747 57187747 G T ZNF479 Missense_Mutation p.H459N 0.23 deleterious(0) possibly_damaging(0.634) TCGA-63-6202-01 7 63982404 63982404 C A ZNF680 Missense_Mutation p.C243F 0.33 deleterious(0) probably_damaging(0.909) TCGA-63-6202-01 7 75401209 75401209 C A CCL26 Silent p.V62V 0.19 TCGA-63-6202-01 7 7557459 7557459 G C COL28A1 Missense_Mutation p.Q275E 0.14 tolerated(0.31) benign(0.243) TCGA-63-6202-01 7 75614954 75614954 G A POR Missense_Mutation p.G486S 0.19 deleterious(0.04) benign(0.241) TCGA-63-6202-01 7 94047830 94047830 G T COL1A2 Missense_Mutation p.G664V 0.23 unknown(0) TCGA-63-6202-01 7 98552895 98552895 C T TRRAP Missense_Mutation p.H1962Y 0.30 probably_damaging(0.999) TCGA-63-6202-01 7 99798772 99798772 T G STAG3 Silent p.S707S 0.22 TCGA-63-6202-01 8 10466484 10466484 C A RP1L1 Silent p.V1708V 0.28 TCGA-63-6202-01 8 10473979 10473979 C A RP1L1 Missense_Mutation p.G243V 0.14 possibly_damaging(0.569) TCGA-63-6202-01 8 104831566 104831566 G T RIMS2 Intron 0.33 TCGA-63-6202-01 8 105105738 105105738 G A RIMS2 Intron 0.04 TCGA-63-6202-01 8 108334131 108334131 T C ANGPT1 Silent p.K267K 0.48 TCGA-63-6202-01 8 109094893 109094893 C T RSPO2 5'UTR 0.16 TCGA-63-6202-01 8 110986306 110986306 G A KCNV1 Silent p.D104D 0.42 TCGA-63-6202-01 8 131136348 131136348 C A ASAP1 Silent p.L506L 0.42 TCGA-63-6202-01 8 133961121 133961121 T G TG Silent p.P1778P 0.09 TCGA-63-6202-01 8 143957125 143957125 C A CYP11B1 Intron 0.56 TCGA-63-6202-01 8 144993989 144993997 CGTCCTTGA - PLEC In_Frame_Del p.L3468_G3471delinsR 0.39 TCGA-63-6202-01 8 145094893 145094893 G A SPATC1 Missense_Mutation p.E99K 0.06 deleterious(0) benign(0.057) TCGA-63-6202-01 8 16850493 16850493 C A FGF20 3'UTR 0.18 TCGA-63-6202-01 8 41504001 41504001 G A NKX6-3 Silent p.F125F 0.18 TCGA-63-6202-01 8 70744061 70744061 G T SLCO5A1 Missense_Mutation p.T283N 0.12 deleterious(0) probably_damaging(0.928) TCGA-63-6202-01 8 72111570 72111570 C T EYA1 3'UTR 0.13 TCGA-63-6202-01 8 72964988 72964988 G C TRPA1 Missense_Mutation p.H553D 0.42 deleterious(0) probably_damaging(0.966) TCGA-63-6202-01 8 75757390 75757390 G C PI15 Missense_Mutation p.K140N 0.13 deleterious(0) probably_damaging(0.998) TCGA-63-6202-01 8 77616340 77616340 C A ZFHX4 Missense_Mutation p.S6Y 0.23 possibly_damaging(0.781) TCGA-63-6202-01 8 77767118 77767118 A G ZFHX4 Missense_Mutation p.Q2654R 0.15 probably_damaging(0.946) TCGA-63-6202-01 8 87638275 87638275 G C CNGB3 Missense_Mutation p.T505R 0.28 tolerated(0.11) benign(0.03) TCGA-63-6202-01 8 99168595 99168595 G T POP1 Missense_Mutation p.S792I 0.38 tolerated(0.48) benign(0.005) TCGA-63-6202-01 9 101585705 101585705 G T GALNT12 Missense_Mutation p.R180I 0.45 tolerated(0.07) benign(0.084) TCGA-63-6202-01 9 107332380 107332380 T A OR13C8 Missense_Mutation p.L311Q 0.53 deleterious(0) possibly_damaging(0.534) TCGA-63-6202-01 9 111679827 111679827 C A IKBKAP Missense_Mutation p.K288N 0.20 deleterious(0) probably_damaging(0.996) TCGA-63-6202-01 9 120476737 120476737 C T TLR4 Silent p.T777T 0.32 TCGA-63-6202-01 9 124544840 124544840 C T DAB2IP Intron 0.22 TCGA-63-6202-01 9 124936896 124936896 A T MORN5 Silent p.L143L 0.34 TCGA-63-6202-01 9 128206877 128206877 C A MAPKAP1 Missense_Mutation p.S449I 0.41 deleterious(0.02) possibly_damaging(0.811) TCGA-63-6202-01 9 136302003 136302003 G T ADAMTS13 Missense_Mutation p.G455C 0.26 tolerated(0.06) benign(0.349) TCGA-63-6202-01 9 18574088 18574088 A T ADAMTSL1 Nonsense_Mutation p.K100* 0.31 TCGA-63-6202-01 9 40773378 40773378 T A ZNF658 Missense_Mutation p.N633Y 0.37 deleterious(0.01) benign(0.261) TCGA-63-6202-01 X 101159199 101159199 C A ZMAT1 Nonsense_Mutation p.E76* 0.32 TCGA-63-6202-01 X 109694561 109694561 C G RGAG1 Missense_Mutation p.T239S 0.44 tolerated(0.12) probably_damaging(0.98) TCGA-63-6202-01 X 117566799 117566799 G C WDR44 Missense_Mutation p.R598P 0.37 tolerated(0.08) possibly_damaging(0.877) TCGA-63-6202-01 X 141290679 141290679 C A MAGEC2 Missense_Mutation p.M365I 0.14 tolerated(0.27) unknown(0) TCGA-63-6202-01 X 151821077 151821077 C A GABRQ Missense_Mutation p.P411Q 0.48 tolerated(0.11) benign(0.153) TCGA-63-6202-01 X 153195481 153195481 C G NAA10 Missense_Mutation p.D223H 0.17 deleterious_low_confidence(0) possibly_damaging(0.764) TCGA-63-6202-01 X 24580609 24580609 T A PCYT1B Missense_Mutation p.Q304L 0.30 deleterious(0.05) benign(0.028) TCGA-63-6202-01 X 30269093 30269093 T G MAGEB1 Missense_Mutation p.F161L 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-63-6202-01 X 34961941 34961941 C G FAM47B Silent p.L331L 0.34 TCGA-63-6202-01 X 50167245 50167245 C A DGKK Splice_Site 0.35 TCGA-63-6202-01 X 54264800 54264800 C A WNK3 Missense_Mutation p.G1330V 0.40 tolerated(0.05) possibly_damaging(0.796) TCGA-63-6202-01 X 73963349 73963349 C A KIAA2022 Missense_Mutation p.R348L 0.33 deleterious(0) probably_damaging(0.98) TCGA-63-6202-01 X 78427401 78427401 C - GPR174 Frame_Shift_Del p.R300Efs*21 0.34 TCGA-63-7020-01 10 14894381 14894381 G A HSPA14 Silent p.V195V 0.45 TCGA-63-7020-01 10 15089210 15089210 C G OLAH 5'UTR 0.60 TCGA-63-7020-01 10 26589879 26589879 C A GAD2 Missense_Mutation p.Q583K 0.35 tolerated(0.6) benign(0.018) TCGA-63-7020-01 10 44873159 44873159 T G CXCL12 3'UTR 0.41 TCGA-63-7020-01 10 91497689 91497689 A G KIF20B Missense_Mutation p.N991D 0.42 tolerated(0.33) benign(0.005) TCGA-63-7020-01 10 97050600 97050600 C A PDLIM1 Nonsense_Mutation p.E25* 0.39 TCGA-63-7020-01 10 98388170 98388170 G T PIK3AP1 Missense_Mutation p.R486S 0.49 deleterious(0) probably_damaging(0.924) TCGA-63-7020-01 11 119206489 119206489 C T RNF26 Silent p.L219L 0.37 TCGA-63-7020-01 11 121495809 121495810 AT - SORL1 Frame_Shift_Del p.M2063Vfs*2 0.15 TCGA-63-7020-01 11 123474230 123474230 G T GRAMD1B Missense_Mutation p.D240Y 0.33 deleterious(0.01) probably_damaging(0.917) TCGA-63-7020-01 11 124252301 124252301 G C OR8B2 Missense_Mutation p.F313L 0.30 deleterious_low_confidence(0) benign(0.183) TCGA-63-7020-01 11 1267031 1267031 C A MUC5B Missense_Mutation p.T2974N 0.39 unknown(0) TCGA-63-7020-01 11 132399082 132399082 T A OPCML Splice_Site p.X134_splice 0.47 TCGA-63-7020-01 11 17432194 17432194 G T ABCC8 Missense_Mutation p.P855T 0.42 deleterious(0) probably_damaging(1) TCGA-63-7020-01 11 17531063 17531063 G T USH1C Missense_Mutation p.P618H 0.30 deleterious_low_confidence(0) possibly_damaging(0.613) TCGA-63-7020-01 11 18194816 18194816 G C MRGPRX4 Missense_Mutation p.V5L 0.33 tolerated(0.08) benign(0.016) TCGA-63-7020-01 11 30915860 30915860 C T DCDC1 Missense_Mutation p.E1610K 0.25 deleterious(0.04) possibly_damaging(0.486) TCGA-63-7020-01 11 47364427 47364427 C G MYBPC3 Missense_Mutation p.V471L 0.39 deleterious(0.03) probably_damaging(0.977) TCGA-63-7020-01 11 48188988 48188988 C T PTPRJ 3'UTR 0.21 TCGA-63-7020-01 11 51412249 51412249 G C OR4A5 Silent p.A49A 0.42 TCGA-63-7020-01 11 56113589 56113589 C A OR8K1 Missense_Mutation p.D25E 0.10 tolerated_low_confidence(0.07) benign(0.038) TCGA-63-7020-01 11 56409256 56409256 G C OR5AP2 Silent p.V220V 0.37 TCGA-63-7020-01 11 57188771 57188771 T G SLC43A3 Missense_Mutation p.Q146P 0.29 deleterious(0) possibly_damaging(0.819) TCGA-63-7020-01 11 5841818 5841818 T C OR52N2 Missense_Mutation p.C85R 0.08 deleterious(0.03) possibly_damaging(0.861) TCGA-63-7020-01 11 59211187 59211187 C A OR5A1 Nonsense_Mutation p.C182* 0.17 TCGA-63-7020-01 11 61079557 61079557 C A DDB1 Splice_Site p.X690_splice 0.31 TCGA-63-7020-01 11 64374620 64374620 G T NRXN2 3'UTR 0.33 TCGA-63-7020-01 11 66255460 66255460 G A DPP3 Missense_Mutation p.A217T 0.12 deleterious(0) probably_damaging(0.998) TCGA-63-7020-01 11 66272098 66272098 G T DPP3 Missense_Mutation p.G632W 0.23 deleterious(0) probably_damaging(1) TCGA-63-7020-01 11 67433102 67433102 G T ALDH3B2 Silent p.T120T 0.37 TCGA-63-7020-01 11 7441758 7441758 C G SYT9 Missense_Mutation p.I453M 0.28 tolerated(0.15) probably_damaging(1) TCGA-63-7020-01 11 7949625 7949625 A T OR10A6 Missense_Mutation p.F195L 0.26 tolerated(0.64) benign(0.009) TCGA-63-7020-01 11 89537419 89537419 C A TRIM49 Missense_Mutation p.M73I 0.13 deleterious(0.05) benign(0.024) TCGA-63-7020-01 11 92532350 92532350 C A FAT3 Missense_Mutation p.S2057R 0.28 benign(0.075) TCGA-63-7020-01 12 102811605 102811605 T - IGF1 Frame_Shift_Del p.G194Efs*8 0.32 TCGA-63-7020-01 12 111351071 111351071 T G MYL2 Missense_Mutation p.K111T 0.33 tolerated(0.77) benign(0.013) TCGA-63-7020-01 12 14656665 14656665 G C PLBD1 3'UTR 0.39 TCGA-63-7020-01 12 19427583 19427583 G T PLEKHA5 Missense_Mutation p.A327S 0.42 tolerated(0.44) benign(0.316) TCGA-63-7020-01 12 27066917 27066917 C A ASUN Missense_Mutation p.G522C 0.38 deleterious(0) probably_damaging(0.997) TCGA-63-7020-01 12 44199695 44199695 G A TWF1 Intron 0.10 TCGA-63-7020-01 12 51868130 51868130 A C SLC4A8 Silent p.R637R 0.19 TCGA-63-7020-01 12 52827619 52827619 T A KRT75 Missense_Mutation p.N157I 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-63-7020-01 12 53002216 53002216 C A KRT73 Missense_Mutation p.A463S 0.41 tolerated(0.4) benign(0.005) TCGA-63-7020-01 12 53201504 53201504 C G KRT4 Missense_Mutation p.E424Q 0.38 deleterious(0.01) possibly_damaging(0.635) TCGA-63-7020-01 12 57037657 57037657 C T ATP5B Missense_Mutation p.D191N 0.23 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-63-7020-01 12 91371925 91371926 - A EPYC Frame_Shift_Ins p.D94* 0.12 TCGA-63-7020-01 12 96384171 96384171 G T HAL Nonsense_Mutation p.Y285* 0.37 TCGA-63-7020-01 12 9985995 9985995 G T KLRF1 Missense_Mutation p.R94I 0.31 deleterious(0.02) benign(0.446) TCGA-63-7020-01 13 103338510 103338510 T A METTL21C Silent p.A222A 0.50 TCGA-63-7020-01 13 29041110 29041110 G A FLT1 Silent p.S106S 0.47 TCGA-63-7020-01 13 70514219 70514219 C G KLHL1 Missense_Mutation p.A323P 0.33 deleterious(0.01) probably_damaging(0.99) TCGA-63-7020-01 13 77730249 77730249 T C MYCBP2 Missense_Mutation p.I2249V 0.64 benign(0.003) TCGA-63-7020-01 14 101515930 101515930 C T MIR655 RNA 0.16 TCGA-63-7020-01 14 106805486 106805486 G A IGHV4-31 Missense_Mutation p.S26L 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.581) TCGA-63-7020-01 14 20612012 20612012 C T OR4N5 Missense_Mutation p.P40S 0.37 tolerated(0.12) probably_damaging(0.999) TCGA-63-7020-01 14 20779756 20779756 C G CCNB1IP1 Missense_Mutation p.E263Q 0.06 tolerated_low_confidence(0.15) benign(0.005) TCGA-63-7020-01 14 21469729 21469729 G T SLC39A2 Missense_Mutation p.L307F 0.43 deleterious(0.01) possibly_damaging(0.793) TCGA-63-7020-01 14 22675426 22675426 A C TRAV34 5'UTR 0.40 TCGA-63-7020-01 14 45606352 45606352 G C FANCM Missense_Mutation p.D197H 0.08 deleterious(0) probably_damaging(1) TCGA-63-7020-01 14 50558416 50558416 G A C14orf183 Missense_Mutation p.A51V 0.51 tolerated_low_confidence(0.34) benign(0.005) TCGA-63-7020-01 14 53098924 53098924 T C GPR137C Missense_Mutation p.L255P 0.22 deleterious(0) probably_damaging(0.991) TCGA-63-7020-01 14 58831823 58831823 G T ARID4A Missense_Mutation p.A1006S 0.16 tolerated(0.13) benign(0.427) TCGA-63-7020-01 14 60072213 60072213 T C RTN1 Missense_Mutation p.E662G 0.43 deleterious(0) probably_damaging(0.943) TCGA-63-7020-01 14 70634094 70634094 T C SLC8A3 Missense_Mutation p.K349R 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-63-7020-01 14 74726471 74726471 C A VSX2 Missense_Mutation p.A249D 0.53 deleterious(0) probably_damaging(0.991) TCGA-63-7020-01 14 75276673 75276673 A T YLPM1 Missense_Mutation p.D1667V 0.15 probably_damaging(0.968) TCGA-63-7020-01 14 76045501 76045501 T C FLVCR2 Silent p.S62S 0.51 TCGA-63-7020-01 15 23890686 23890686 C T MAGEL2 Missense_Mutation p.R132H 0.29 tolerated_low_confidence(0.05) probably_damaging(0.997) TCGA-63-7020-01 15 31196925 31196925 G T FAN1 Missense_Mutation p.S20I 0.20 deleterious(0) benign(0.413) TCGA-63-7020-01 15 33840395 33840395 C T RYR3 Missense_Mutation p.L269F 0.35 probably_damaging(0.988) TCGA-63-7020-01 15 43584176 43584176 C - TGM7 Splice_Site p.X186_splice 0.31 TCGA-63-7020-01 15 49880241 49880241 T C FAM227B Missense_Mutation p.K126R 0.19 tolerated(0.43) benign(0.006) TCGA-63-7020-01 15 59383276 59383276 G T RNF111 Nonsense_Mutation p.E897* 0.21 TCGA-63-7020-01 15 65042545 65042545 T A RBPMS2 Missense_Mutation p.R67S 0.41 tolerated(0.05) benign(0.314) TCGA-63-7020-01 15 65490676 65490676 C A CILP Missense_Mutation p.D650Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-63-7020-01 15 68582617 68582618 - T FEM1B Frame_Shift_Ins p.C308Lfs*2 0.32 TCGA-63-7020-01 15 72557431 72557431 C A PARP6 Missense_Mutation p.D107Y 0.19 deleterious(0) possibly_damaging(0.896) TCGA-63-7020-01 15 79317770 79317770 C T RASGRF1 Silent p.R476R 0.33 TCGA-63-7020-01 15 97328477 97328477 G T SPATA8 3'UTR 0.50 TCGA-63-7020-01 16 11363054 11363082 TTGGGGCTGAGAGTTGCTATGGAGCTGAG - TNP2 Frame_Shift_Del p.T13Kfs*54 0.36 TCGA-63-7020-01 16 15704908 15704908 G A KIAA0430 Silent p.I1225I 0.13 TCGA-63-7020-01 16 27777759 27777759 G C KIAA0556 Missense_Mutation p.W1313C 0.23 deleterious(0) probably_damaging(1) TCGA-63-7020-01 16 30521729 30521729 C A ITGAL Silent p.S852S 0.29 TCGA-63-7020-01 16 30780706 30780706 G T RNF40 Missense_Mutation p.G816V 0.31 deleterious(0.02) benign(0.028) TCGA-63-7020-01 16 4408416 4408416 C A CORO7 Silent p.L803L 0.40 TCGA-63-7020-01 16 76509928 76509928 C A CNTNAP4 Missense_Mutation p.A510D 0.29 deleterious(0) possibly_damaging(0.781) TCGA-63-7020-01 16 88952432 88952432 G A CBFA2T3 Missense_Mutation p.P277L 0.64 deleterious(0.04) possibly_damaging(0.542) TCGA-63-7020-01 17 11554551 11554551 G T DNAH9 Nonsense_Mutation p.E755* 0.47 TCGA-63-7020-01 17 17030031 17030031 C T MPRIP Nonsense_Mutation p.Q95* 0.44 TCGA-63-7020-01 17 17122487 17122488 - C FLCN Frame_Shift_Ins p.E303Gfs*3 0.30 TCGA-63-7020-01 17 263712 263712 G T C17orf97 Nonsense_Mutation p.E360* 0.56 TCGA-63-7020-01 17 26875693 26875693 T C UNC119 Missense_Mutation p.Y84C 0.45 deleterious(0.02) possibly_damaging(0.89) TCGA-63-7020-01 17 29684296 29684296 G T NF1 Missense_Mutation p.V2627L 0.42 tolerated(0.11) possibly_damaging(0.891) TCGA-63-7020-01 17 39552712 39552712 A T KRT31 Missense_Mutation p.L183Q 0.48 deleterious(0) probably_damaging(1) TCGA-63-7020-01 17 39674737 39674737 G A KRT15 Missense_Mutation p.R115C 0.49 deleterious(0.04) probably_damaging(0.998) TCGA-63-7020-01 17 45056174 45056174 A T RPRML Missense_Mutation p.V67E 0.40 deleterious(0) probably_damaging(0.974) TCGA-63-7020-01 17 56247886 56247886 G T OR4D2 Missense_Mutation p.R290S 0.48 deleterious(0) possibly_damaging(0.616) TCGA-63-7020-01 17 56350197 56350197 G T MPO Silent p.I568I 0.44 TCGA-63-7020-01 17 57351104 57351104 T C GDPD1 Silent p.L305L 0.41 TCGA-63-7020-01 17 7577111 7577111 G T TP53 Missense_Mutation p.A276D 0.29 deleterious(0) probably_damaging(0.992) TCGA-63-7020-01 18 21534470 21534470 A G LAMA3 Missense_Mutation p.N3287S 0.29 benign(0.142) TCGA-63-7020-01 18 34854464 34854464 C G CELF4 Intron 0.18 TCGA-63-7020-01 18 70209319 70209319 C T CBLN2 Missense_Mutation p.G26D 0.46 deleterious_low_confidence(0.01) benign(0) TCGA-63-7020-01 19 30936623 30936623 C T ZNF536 Silent p.S718S 0.41 TCGA-63-7020-01 19 33697176 33697176 G A LRP3 Silent p.A500A 0.12 TCGA-63-7020-01 19 50917072 50917072 G T POLD1 Missense_Mutation p.G775V 0.36 deleterious(0) probably_damaging(1) TCGA-63-7020-01 19 51631713 51631713 C A SIGLEC9 Silent p.G383G 0.23 TCGA-63-7020-01 19 54445367 54445367 C A CACNG7 Missense_Mutation p.F216L 0.39 tolerated(0.48) benign(0.002) TCGA-63-7020-01 19 56701855 56701855 C G ZSCAN5B Missense_Mutation p.E277Q 0.10 deleterious(0.01) possibly_damaging(0.678) TCGA-63-7020-01 19 57325910 57325910 G A PEG3 Silent p.H1300H 0.26 TCGA-63-7020-01 19 57743957 57743957 G T AURKC Missense_Mutation p.R115L 0.29 deleterious(0) probably_damaging(0.98) TCGA-63-7020-01 19 58199282 58199282 A C ZNF551 Missense_Mutation p.I547L 0.43 tolerated(0.42) benign(0.04) TCGA-63-7020-01 19 8206863 8206863 G A FBN3 Missense_Mutation p.R234C 0.36 deleterious(0) probably_damaging(1) TCGA-63-7020-01 1 113238096 113238096 C G MOV10 Missense_Mutation p.A560G 0.41 deleterious(0.03) probably_damaging(0.997) TCGA-63-7020-01 1 116228150 116228150 T C VANGL1 Splice_Site p.X438_splice 0.16 TCGA-63-7020-01 1 152285715 152285715 G C FLG Silent p.T549T 0.36 TCGA-63-7020-01 1 153643427 153643427 C A ILF2 5'UTR 0.37 TCGA-63-7020-01 1 159683394 159683394 C A CRP Missense_Mutation p.S199I 0.18 deleterious(0.05) possibly_damaging(0.621) TCGA-63-7020-01 1 160093848 160093848 T C ATP1A2 Splice_Site p.X165_splice 0.26 TCGA-63-7020-01 1 162725039 162725039 G T DDR2 Missense_Mutation p.D171Y 0.19 deleterious(0) possibly_damaging(0.886) TCGA-63-7020-01 1 167032887 167032887 G A GPA33 Missense_Mutation p.S168L 0.33 deleterious(0) probably_damaging(0.951) TCGA-63-7020-01 1 167873151 167873151 T C ADCY10 Missense_Mutation p.N76S 0.15 tolerated(0.48) probably_damaging(0.999) TCGA-63-7020-01 1 169483616 169483616 T A F5 Missense_Mutation p.I2204F 0.28 deleterious(0) probably_damaging(0.981) TCGA-63-7020-01 1 17281875 17281875 G C CROCC Silent p.L1178L 0.44 TCGA-63-7020-01 1 175087702 175087702 G A TNN Missense_Mutation p.D798N 0.25 deleterious(0.01) probably_damaging(0.986) TCGA-63-7020-01 1 175372536 175372536 C A TNR Missense_Mutation p.C239F 0.17 deleterious(0) probably_damaging(0.969) TCGA-63-7020-01 1 182027067 182027067 G - ZNF648 Frame_Shift_Del p.Q27Rfs*3 0.23 TCGA-63-7020-01 1 182615811 182615811 T C RGS8 3'UTR 0.57 TCGA-63-7020-01 1 190067930 190067930 G T BRINP3 Silent p.R507R 0.19 TCGA-63-7020-01 1 201017724 201017724 T A CACNA1S Missense_Mutation p.K1476M 0.14 deleterious(0) probably_damaging(0.968) TCGA-63-7020-01 1 201031072 201031072 T G CACNA1S Missense_Mutation p.Q1018P 0.21 tolerated(0.09) possibly_damaging(0.613) TCGA-63-7020-01 1 235715207 235715207 A T GNG4 3'UTR 0.33 TCGA-63-7020-01 1 240371789 240371789 C A FMN2 Missense_Mutation p.P1226H 0.31 benign(0.045) TCGA-63-7020-01 1 241094066 241094066 G T RGS7 Silent p.T112T 0.16 TCGA-63-7020-01 1 248402917 248402917 C A OR2M4 Silent p.G229G 0.40 TCGA-63-7020-01 1 2530163 2530163 C T MMEL1 Missense_Mutation p.E370K 0.24 deleterious(0) probably_damaging(1) TCGA-63-7020-01 1 33060775 33060775 G T ZBTB8A Missense_Mutation p.C315F 0.41 benign(0.354) TCGA-63-7020-01 1 44083445 44083445 G C PTPRF Missense_Mutation p.D1412H 0.10 deleterious(0) probably_damaging(0.999) TCGA-63-7020-01 1 44433045 44433045 C G IPO13 Missense_Mutation p.A891G 0.26 tolerated(0.16) benign(0.078) TCGA-63-7020-01 1 64698267 64698267 G T UBE2U Missense_Mutation p.S177I 0.25 tolerated(0.08) benign(0.276) TCGA-63-7020-01 1 64936540 64936540 A G CACHD1 5'UTR 0.39 TCGA-63-7020-01 1 79385976 79385976 G A ELTD1 Silent p.F451F 0.33 TCGA-63-7020-01 20 40050201 40050201 T C CHD6 Missense_Mutation p.I1692V 0.56 tolerated_low_confidence(0.51) benign(0.002) TCGA-63-7020-01 20 48098811 48098811 C T KCNB1 Silent p.L69L 0.34 TCGA-63-7020-01 20 57767619 57767619 G A ZNF831 Silent p.T515T 0.25 TCGA-63-7020-01 20 60937548 60937548 C G LAMA5 Missense_Mutation p.A120P 0.37 probably_damaging(1) TCGA-63-7020-01 20 61538657 61538657 C T DIDO1 Missense_Mutation p.A406T 0.19 probably_damaging(0.998) TCGA-63-7020-01 20 62729962 62729962 G T OPRL1 Missense_Mutation p.G308V 0.18 deleterious(0) probably_damaging(1) TCGA-63-7020-01 21 35757834 35757834 G A SMIM11 Missense_Mutation p.C24Y 0.28 tolerated(0.07) benign(0.097) TCGA-63-7020-01 21 46000352 46000352 G A KRTAP10-5 Missense_Mutation p.P35L 0.38 deleterious(0) unknown(0) TCGA-63-7020-01 22 20780145 20780145 C A SCARF2 Silent p.A711A 0.33 TCGA-63-7020-01 22 36587622 36587622 C A APOL4 Missense_Mutation p.G185V 0.46 deleterious(0.01) possibly_damaging(0.461) TCGA-63-7020-01 22 39908459 39908459 G T MIEF1 Missense_Mutation p.R182L 0.29 tolerated(0.09) probably_damaging(0.952) TCGA-63-7020-01 2 108475902 108475902 G T RGPD4 Missense_Mutation p.S509I 0.46 deleterious(0.03) possibly_damaging(0.766) TCGA-63-7020-01 2 109397775 109397775 T A RANBP2 Missense_Mutation p.S2884T 0.09 tolerated(0.39) benign(0.255) TCGA-63-7020-01 2 135893152 135893152 G T RAB3GAP1 Nonsense_Mutation p.E525* 0.52 TCGA-63-7020-01 2 141143512 141143512 C A LRP1B Missense_Mutation p.R3494L 0.06 possibly_damaging(0.569) TCGA-63-7020-01 2 141707820 141707820 G T LRP1B Silent p.I1040I 0.45 TCGA-63-7020-01 2 17698778 17698778 C A RAD51AP2 Missense_Mutation p.R302I 0.57 deleterious(0) probably_damaging(0.988) TCGA-63-7020-01 2 179582805 179582805 A G TTN Missense_Mutation p.Y8310H 0.08 TCGA-63-7020-01 2 182430176 182430176 G A CERKL Nonsense_Mutation p.Q247* 0.10 TCGA-63-7020-01 2 215595158 215595158 T A BARD1 Missense_Mutation p.S660C 0.42 deleterious(0.02) probably_damaging(0.994) TCGA-63-7020-01 2 233757693 233757693 A T NGEF Missense_Mutation p.Y353N 0.53 tolerated(0.21) benign(0.424) TCGA-63-7020-01 2 233899561 233899561 C A NEU2 Missense_Mutation p.P313T 0.56 tolerated(0.77) benign(0.015) TCGA-63-7020-01 2 242009345 242009345 T C SNED1 Silent p.P1106P 0.08 TCGA-63-7020-01 2 7179778 7179778 G A RNF144A Missense_Mutation p.G256R 0.50 deleterious(0) probably_damaging(1) TCGA-63-7020-01 2 80874744 80874744 A T CTNNA2 Missense_Mutation p.K822I 0.50 deleterious(0) probably_damaging(1) TCGA-63-7020-01 2 90249113 90249113 C G IGKV1D-43 Silent p.A23A 0.06 TCGA-63-7020-01 3 129182400 129182400 A G IFT122 Intron 0.38 TCGA-63-7020-01 3 129289654 129289654 G A PLXND1 Missense_Mutation p.A1242V 0.11 tolerated(0.22) benign(0.001) TCGA-63-7020-01 3 164773096 164773096 C A SI Splice_Site p.X467_splice 0.26 TCGA-63-7020-01 3 169578515 169578515 A G LRRC31 Silent p.V107V 0.15 TCGA-63-7020-01 3 174814669 174814669 G T NAALADL2 Missense_Mutation p.A45S 0.26 tolerated(0.33) benign(0.038) TCGA-63-7020-01 3 179047455 179047455 T A ZNF639 Silent p.S36S 0.36 TCGA-63-7020-01 3 186461657 186461657 T A KNG1 3'Flank 0.62 TCGA-63-7020-01 3 196737654 196737654 G T MFI2 Silent p.V415V 0.55 TCGA-63-7020-01 3 45715889 45715889 T C LIMD1 Missense_Mutation p.C627R 0.37 deleterious(0) probably_damaging(0.999) TCGA-63-7020-01 3 48459674 48459674 G A PLXNB1 Missense_Mutation p.R1050C 0.56 deleterious(0.03) possibly_damaging(0.708) TCGA-63-7020-01 3 49212176 49212176 G C KLHDC8B Silent p.G181G 0.39 TCGA-63-7020-01 4 121957990 121957990 T C NDNF Missense_Mutation p.H379R 0.27 deleterious(0.04) possibly_damaging(0.702) TCGA-63-7020-01 4 122854261 122854261 C A TRPC3 Intron 0.40 TCGA-63-7020-01 4 1377730 1377730 T G UVSSA Splice_Site p.X679_splice 0.38 TCGA-63-7020-01 4 155250846 155250846 C A DCHS2 Missense_Mutation p.W794C 0.30 deleterious(0.03) benign(0.248) TCGA-63-7020-01 4 15602961 15602961 A C CC2D2A Missense_Mutation p.E1592D 0.41 deleterious(0) possibly_damaging(0.834) TCGA-63-7020-01 4 177142366 177142366 G A ASB5 Missense_Mutation p.P204S 0.49 deleterious(0.02) benign(0.084) TCGA-63-7020-01 4 247820 247820 T A ZNF876P RNA 0.67 TCGA-63-7020-01 4 54966620 54966620 A G GSX2 Missense_Mutation p.M37V 0.22 tolerated(0.92) benign(0) TCGA-63-7020-01 4 71660592 71660592 A G RUFY3 Missense_Mutation p.Q513R 0.47 tolerated(0.13) benign(0.001) TCGA-63-7020-01 4 75177925 75177925 G A EPGN Missense_Mutation p.A53T 0.47 tolerated(0.34) benign(0.294) TCGA-63-7020-01 5 179739441 179739441 C A GFPT2 Missense_Mutation p.R512I 0.37 tolerated(0.16) benign(0.013) TCGA-63-7020-01 5 35871315 35871315 G T IL7R Silent p.T179T 0.24 TCGA-63-7020-01 5 50125735 50125735 G T PARP8 Missense_Mutation p.A725S 0.19 deleterious(0.04) probably_damaging(0.955) TCGA-63-7020-01 5 52096371 52096371 A G PELO Missense_Mutation p.Q48R 0.44 tolerated(0.49) possibly_damaging(0.703) TCGA-63-7020-01 6 10586521 10586521 T C GCNT2 Intron 0.12 TCGA-63-7020-01 6 136582427 136582427 C A BCLAF1 Missense_Mutation p.K911N 0.14 deleterious(0.02) unknown(0) TCGA-63-7020-01 6 142409568 142409568 G T NMBR Missense_Mutation p.S76R 0.44 deleterious(0.01) probably_damaging(0.947) TCGA-63-7020-01 6 26271427 26271427 C T HIST1H3G Silent p.L62L 0.06 TCGA-63-7020-01 6 33762559 33762559 G T MLN 3'UTR 0.25 TCGA-63-7020-01 6 38854711 38854711 C A DNAH8 Missense_Mutation p.R2585S 0.31 probably_damaging(1) TCGA-63-7020-01 6 43152146 43152146 A G CUL9 Missense_Mutation p.D33G 0.66 deleterious(0) probably_damaging(0.992) TCGA-63-7020-01 6 76660492 76660492 G C IMPG1 Missense_Mutation p.S537R 0.47 deleterious(0.03) benign(0.149) TCGA-63-7020-01 7 103341421 103341421 G T RELN Missense_Mutation p.P280T 0.40 tolerated(0.16) benign(0.009) TCGA-63-7020-01 7 141734516 141734516 C T MGAM Missense_Mutation p.R612C 0.41 deleterious(0) probably_damaging(1) TCGA-63-7020-01 7 148106487 148106487 T G CNTNAP2 Missense_Mutation p.S1240R 0.38 tolerated(0.37) benign(0.192) TCGA-63-7020-01 7 149521593 149521593 G T SSPO RNA 0.17 TCGA-63-7020-01 7 151945047 151945047 G T KMT2C Silent p.G824G 0.12 TCGA-63-7020-01 7 20668378 20668378 G C ABCB5 Missense_Mutation p.G59A 0.25 deleterious(0) probably_damaging(0.979) TCGA-63-7020-01 7 30701810 30701810 G C CRHR2 Silent p.V267V 0.16 TCGA-63-7020-01 7 31617840 31617840 G T CCDC129 Missense_Mutation p.C347F 0.27 tolerated(0.69) possibly_damaging(0.89) TCGA-63-7020-01 7 38370123 38370123 C T TRGV8 Missense_Mutation p.G59R 0.40 tolerated(0.07) probably_damaging(0.99) TCGA-63-7020-01 7 72849270 72849270 G A FZD9 Silent p.T311T 0.33 TCGA-63-7020-01 7 87138739 87138739 C - ABCB1 Frame_Shift_Del p.G1114Afs*33 0.14 TCGA-63-7020-01 7 92099627 92099627 A G ERVW-1 Silent p.P23P 0.33 TCGA-63-7020-01 8 105510125 105510125 G T LRP12 Missense_Mutation p.Q219K 0.38 tolerated(0.12) possibly_damaging(0.908) TCGA-63-7020-01 8 113243786 113243786 G T CSMD3 Missense_Mutation p.L3606I 0.37 deleterious(0.01) possibly_damaging(0.549) TCGA-63-7020-01 8 113516093 113516093 C T CSMD3 Missense_Mutation p.S1670N 0.29 deleterious(0.01) possibly_damaging(0.561) TCGA-63-7020-01 8 113518943 113518943 A T CSMD3 Nonsense_Mutation p.Y1624* 0.47 TCGA-63-7020-01 8 125989746 125989746 C T ZNF572 Silent p.Y412Y 0.48 TCGA-63-7020-01 8 139163575 139163575 G T FAM135B Missense_Mutation p.P1048H 0.20 deleterious(0.03) possibly_damaging(0.832) TCGA-63-7020-01 8 25227140 25227140 G A DOCK5 Silent p.K1169K 0.44 TCGA-63-7020-01 8 33451219 33451219 G A DUSP26 Missense_Mutation p.H90Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-63-7020-01 8 41790137 41790137 C A KAT6A Silent p.A1867A 0.39 TCGA-63-7020-01 8 51363116 51363116 C A SNTG1 Missense_Mutation p.A93E 0.20 deleterious(0.04) possibly_damaging(0.893) TCGA-63-7020-01 8 77776683 77776683 A T ZFHX4 Missense_Mutation p.D3578V 0.66 probably_damaging(0.997) TCGA-63-7020-01 9 103111471 103111471 T C TEX10 Missense_Mutation p.I59V 0.53 tolerated(0.26) benign(0.007) TCGA-63-7020-01 9 113243614 113243614 T C SVEP1 Missense_Mutation p.D758G 0.79 benign(0.012) TCGA-63-7020-01 9 134497328 134497328 T A RAPGEF1 Missense_Mutation p.Y588F 0.36 tolerated(0.1) probably_damaging(0.999) TCGA-63-7020-01 9 32634603 32634603 G T TAF1L Silent p.L325L 0.44 TCGA-63-7020-01 9 36091180 36091180 T C RECK Missense_Mutation p.Y309H 0.50 deleterious(0) probably_damaging(0.972) TCGA-63-7020-01 9 71478827 71478827 A T PIP5K1B Silent p.P48P 0.40 TCGA-63-7020-01 X 113865276 113865276 C A HTR2C Intron 0.67 TCGA-63-7020-01 X 133303745 133303745 A G MIR19B2 RNA 0.62 TCGA-63-7020-01 X 153589815 153589815 C A FLNA Missense_Mutation p.G1023V 0.66 tolerated(0.46) benign(0.019) TCGA-63-7020-01 X 32459431 32459431 C G DMD Missense_Mutation p.E1263Q 0.32 possibly_damaging(0.888) TCGA-63-7020-01 X 55514437 55514439 TAA - USP51 In_Frame_Del p.L312del 0.19 TCGA-63-7020-01 X 99887479 99887479 T G TSPAN6 Intron 0.64 TCGA-63-7020-01 Y 21877845 21877845 C A KDM5D Missense_Mutation p.D693Y 0.82 deleterious(0) probably_damaging(0.97) TCGA-63-7021-01 10 116975565 116975565 T A ATRNL1 Missense_Mutation p.Y487N 0.17 deleterious(0) probably_damaging(0.977) TCGA-63-7021-01 10 13264030 13264030 G T UCMA 3'UTR 0.17 TCGA-63-7021-01 10 13264031 13264031 G T UCMA 3'UTR 0.17 TCGA-63-7021-01 10 15648294 15648294 A G ITGA8 Missense_Mutation p.V631A 0.23 deleterious(0.02) benign(0.297) TCGA-63-7021-01 10 18280140 18280140 C A SLC39A12 Missense_Mutation p.H444N 0.17 tolerated(0.17) possibly_damaging(0.723) TCGA-63-7021-01 10 47087727 47087727 C A NPY4R Missense_Mutation p.T315N 0.10 deleterious(0) probably_damaging(0.996) TCGA-63-7021-01 10 48416511 48416511 G C GDF2 Missense_Mutation p.N61K 0.10 deleterious(0) probably_damaging(0.909) TCGA-63-7021-01 10 68979414 68979414 G T CTNNA3 Missense_Mutation p.P265Q 0.15 tolerated(0.68) benign(0.031) TCGA-63-7021-01 10 69366688 69366688 T C CTNNA3 Silent p.G73G 0.09 TCGA-63-7021-01 10 74899113 74899113 C G ECD Missense_Mutation p.A492P 0.14 deleterious(0.01) possibly_damaging(0.882) TCGA-63-7021-01 10 81372990 81372990 A T SFTPA1 Missense_Mutation p.D128V 0.16 deleterious(0.03) possibly_damaging(0.509) TCGA-63-7021-01 10 83635666 83635666 T G NRG3 Silent p.P190P 0.15 TCGA-63-7021-01 10 91143921 91143921 C T IFIT1B Missense_Mutation p.S284F 0.11 deleterious(0) probably_damaging(0.991) TCGA-63-7021-01 10 94269862 94269862 T A IDE Missense_Mutation p.K281I 0.09 deleterious(0) probably_damaging(0.994) TCGA-63-7021-01 11 105009749 105009749 T C CARD18 Missense_Mutation p.I22V 0.12 deleterious(0.05) possibly_damaging(0.597) TCGA-63-7021-01 11 111487082 111487082 A T SIK2 Missense_Mutation p.Q84L 0.21 deleterious(0) probably_damaging(0.999) TCGA-63-7021-01 11 117332207 117332207 T C DSCAML1 Missense_Mutation p.K1184R 0.17 tolerated(0.23) benign(0.144) TCGA-63-7021-01 11 118972313 118972313 G T DPAGT1 Nonsense_Mutation p.S18* 0.11 TCGA-63-7021-01 11 120322317 120322317 G C ARHGEF12 Missense_Mutation p.R647P 0.16 tolerated(0.09) benign(0.015) TCGA-63-7021-01 11 123513246 123513246 T C SCN3B Missense_Mutation p.Y118C 0.10 deleterious(0) probably_damaging(0.983) TCGA-63-7021-01 11 124252317 124252317 T C OR8B2 Missense_Mutation p.Q308R 0.12 tolerated_low_confidence(0.49) benign(0.002) TCGA-63-7021-01 11 124761621 124761621 C T ROBO4 Missense_Mutation p.S542N 0.23 tolerated(0.07) probably_damaging(0.993) TCGA-63-7021-01 11 19961318 19961318 T C NAV2 Silent p.T738T 0.21 TCGA-63-7021-01 11 33163244 33163244 C T CSTF3 Missense_Mutation p.G65D 0.08 deleterious(0) probably_damaging(0.997) TCGA-63-7021-01 11 4388614 4388614 C A OR52B4 Missense_Mutation p.Q304H 0.15 tolerated(0.07) benign(0.013) TCGA-63-7021-01 11 44289094 44289094 A G ALX4 Missense_Mutation p.S286P 0.16 deleterious(0.04) possibly_damaging(0.827) TCGA-63-7021-01 11 50003392 50003392 A G OR4C12 Missense_Mutation p.Y216H 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-63-7021-01 11 51515344 51515344 G T OR4C46 Missense_Mutation p.M21I 0.09 tolerated_low_confidence(0.2) benign(0.009) TCGA-63-7021-01 11 55322720 55322720 G T OR4C15 Missense_Mutation p.R313L 0.09 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-63-7021-01 11 55371394 55371394 T C OR4C11 Missense_Mutation p.I152M 0.31 tolerated(0.11) benign(0.417) TCGA-63-7021-01 11 55433103 55433103 C G OR4C6 Missense_Mutation p.A154G 0.12 tolerated_low_confidence(0.17) benign(0.162) TCGA-63-7021-01 11 55587994 55587994 G C OR5D18 Missense_Mutation p.D297H 0.10 deleterious(0) probably_damaging(0.95) TCGA-63-7021-01 11 56143771 56143771 C A OR8U1 Silent p.A224A 0.10 TCGA-63-7021-01 11 57996261 57996261 A G OR10Q1 Silent p.V29V 0.12 TCGA-63-7021-01 11 5905723 5905723 G A OR52E4 Missense_Mutation p.M67I 0.16 tolerated(0.33) benign(0.017) TCGA-63-7021-01 11 65124577 65124577 A G TIGD3 Missense_Mutation p.D433G 0.14 deleterious(0) benign(0.381) TCGA-63-7021-01 11 68705757 68705757 A G IGHMBP2 Missense_Mutation p.T907A 0.11 tolerated(0.78) benign(0.006) TCGA-63-7021-01 11 89106661 89106661 C A NOX4 Splice_Site p.X359_splice 0.14 TCGA-63-7021-01 12 109889502 109889502 C A KCTD10 Silent p.G280G 0.12 TCGA-63-7021-01 12 111311735 111311735 G A CCDC63 Silent p.Q153Q 0.18 TCGA-63-7021-01 12 118517259 118517259 C A VSIG10 Missense_Mutation p.G273W 0.10 deleterious(0.01) probably_damaging(0.993) TCGA-63-7021-01 12 133219410 133219410 T C POLE Missense_Mutation p.Y1575C 0.15 deleterious(0) probably_damaging(0.998) TCGA-63-7021-01 12 13715799 13715799 T C GRIN2B Missense_Mutation p.N1458S 0.15 tolerated(0.21) possibly_damaging(0.492) TCGA-63-7021-01 12 18891454 18891454 T A CAPZA3 Missense_Mutation p.F84L 0.10 tolerated(0.26) possibly_damaging(0.721) TCGA-63-7021-01 12 1943439 1943439 G T LRTM2 Missense_Mutation p.R222L 0.21 tolerated(0.1) benign(0.091) TCGA-63-7021-01 12 32135969 32135969 G T KIAA1551 Missense_Mutation p.D694Y 0.22 deleterious(0) benign(0.386) TCGA-63-7021-01 12 32955412 32955412 C A PKP2 Missense_Mutation p.D742Y 0.14 deleterious(0.04) probably_damaging(0.922) TCGA-63-7021-01 12 40041616 40041616 G T C12orf40 Missense_Mutation p.S136I 0.17 tolerated(0.2) possibly_damaging(0.509) TCGA-63-7021-01 12 49415825 49415825 C A KMT2D Splice_Site p.X5507_splice 0.18 TCGA-63-7021-01 12 51389457 51389457 G A SLC11A2 Silent p.V344V 0.10 TCGA-63-7021-01 12 51863568 51863568 G C SLC4A8 Missense_Mutation p.R507P 0.11 tolerated(0.09) possibly_damaging(0.811) TCGA-63-7021-01 12 54396350 54396350 G C HOXC9 Silent p.V225V 0.10 TCGA-63-7021-01 12 54396499 54396499 A T HOXC9 3'UTR 0.16 TCGA-63-7021-01 12 57039134 57039134 C T ATP5B Missense_Mutation p.R44K 0.11 tolerated_low_confidence(0.13) benign(0.039) TCGA-63-7021-01 12 59271224 59271224 G A LRIG3 Missense_Mutation p.H832Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-63-7021-01 12 66152548 66152548 G A RPSAP52 RNA 0.18 TCGA-63-7021-01 12 68645356 68645356 A G IL22 Silent p.H133H 0.22 TCGA-63-7021-01 12 69645033 69645033 A T CPSF6 Missense_Mutation p.D62V 0.10 deleterious(0.05) unknown(0) TCGA-63-7021-01 12 72969072 72969072 G T TRHDE Missense_Mutation p.W678C 0.11 deleterious(0) probably_damaging(0.99) TCGA-63-7021-01 12 81111245 81111245 C T MYF5 Nonsense_Mutation p.Q135* 0.12 TCGA-63-7021-01 12 95535230 95535230 T C FGD6 Missense_Mutation p.Y924C 0.13 deleterious(0.02) possibly_damaging(0.895) TCGA-63-7021-01 12 96077309 96077309 C G NTN4 Silent p.G453G 0.11 TCGA-63-7021-01 13 39358895 39358895 G T FREM2 Missense_Mutation p.G1990V 0.14 deleterious(0) probably_damaging(0.988) TCGA-63-7021-01 13 39358896 39358896 A T FREM2 Silent p.G1990G 0.14 TCGA-63-7021-01 13 92003059 92003059 A G MIR17HG RNA 0.22 TCGA-63-7021-01 14 102452931 102452931 G A DYNC1H1 Missense_Mutation p.R790Q 0.11 benign(0.019) TCGA-63-7021-01 14 107035117 107035117 C T IGHV5-51 Missense_Mutation p.G16R 0.20 deleterious(0.01) probably_damaging(0.946) TCGA-63-7021-01 14 20296066 20296066 T C OR4N2 Silent p.F153F 0.11 TCGA-63-7021-01 14 21269788 21269788 T C RNASE1 Missense_Mutation p.H147R 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-63-7021-01 14 22386640 22386640 G A TRAV13-2 Splice_Site p.X17_splice 0.29 TCGA-63-7021-01 14 22740232 22740232 G A TRAV38-1 Missense_Mutation p.D46N 0.15 deleterious(0.04) benign(0.048) TCGA-63-7021-01 14 23858860 23858860 C T MYH6 Silent p.E1267E 0.24 TCGA-63-7021-01 14 24108391 24108391 C T DHRS2 Silent p.I48I 0.10 TCGA-63-7021-01 14 24769369 24769369 C T NOP9 Missense_Mutation p.S70L 0.15 tolerated(0.1) benign(0.006) TCGA-63-7021-01 14 25043707 25043707 T C CTSG Splice_Site p.X114_splice 0.07 TCGA-63-7021-01 14 31590670 31590670 G T HECTD1 Silent p.R1719R 0.09 TCGA-63-7021-01 14 38281550 38281550 T A TTC6 Missense_Mutation p.L1534H 0.11 deleterious(0.01) probably_damaging(1) TCGA-63-7021-01 14 67525579 67525579 A G GPHN Intron 0.13 TCGA-63-7021-01 14 88652053 88652053 C A KCNK10 Silent p.L486L 0.18 TCGA-63-7021-01 14 88904701 88904701 G C SPATA7 Missense_Mutation p.D579H 0.10 deleterious(0) benign(0.162) TCGA-63-7021-01 15 22383021 22383021 G T OR4N4 Missense_Mutation p.Q183H 0.14 tolerated(0.09) probably_damaging(1) TCGA-63-7021-01 15 22709713 22709713 A C AC116165.1 5'Flank 0.11 TCGA-63-7021-01 15 23049269 23049269 C T NIPA1 Missense_Mutation p.G184R 0.16 deleterious(0) probably_damaging(1) TCGA-63-7021-01 15 23445426 23445426 C - AC100757.1 3'Flank 0.10 TCGA-63-7021-01 15 52258535 52258535 A G LEO1 Silent p.S75S 0.13 TCGA-63-7021-01 15 56132825 56132825 A G NEDD4 Missense_Mutation p.Y994H 0.11 deleterious(0.03) possibly_damaging(0.468) TCGA-63-7021-01 15 83215262 83215262 C A CPEB1 Missense_Mutation p.D502Y 0.16 deleterious(0) probably_damaging(0.96) TCGA-63-7021-01 15 84651860 84651860 A T ADAMTSL3 Missense_Mutation p.Q1160H 0.16 tolerated(0.13) benign(0.289) TCGA-63-7021-01 16 1259356 1259356 C A CACNA1H Missense_Mutation p.L1230M 0.13 deleterious(0.03) probably_damaging(0.972) TCGA-63-7021-01 16 1551663 1551663 G A TELO2 Splice_Site p.X454_splice 0.09 TCGA-63-7021-01 16 20331624 20331624 G T GP2 Missense_Mutation p.T276N 0.15 deleterious(0.03) possibly_damaging(0.703) TCGA-63-7021-01 16 31212918 31212918 C T PYCARD Silent p.L192L 0.09 TCGA-63-7021-01 16 3304331 3304331 G A MEFV Missense_Mutation p.T246I 0.14 deleterious(0.05) benign(0.086) TCGA-63-7021-01 16 4745126 4745126 A C NUDT16L1 Silent p.A194A 0.08 TCGA-63-7021-01 16 53913832 53913832 A G FTO Missense_Mutation p.N351S 0.15 tolerated(1) benign(0.006) TCGA-63-7021-01 16 72160022 72160022 G A PMFBP1 Nonsense_Mutation p.Q700* 0.14 TCGA-63-7021-01 16 74729412 74729412 T A MLKL Nonsense_Mutation p.R82* 0.12 TCGA-63-7021-01 16 85952157 85952157 G T IRF8 Missense_Mutation p.G246C 0.20 deleterious(0.03) possibly_damaging(0.904) TCGA-63-7021-01 16 87678453 87678453 C T JPH3 Silent p.G324G 0.18 TCGA-63-7021-01 17 10368786 10368786 C A MYH4 Missense_Mutation p.D160Y 0.15 deleterious(0) probably_damaging(0.974) TCGA-63-7021-01 17 11513827 11513827 G A DNAH9 Silent p.G243G 0.11 TCGA-63-7021-01 17 27017975 27017975 A T SUPT6H Missense_Mutation p.H1176L 0.12 deleterious(0.04) benign(0.269) TCGA-63-7021-01 17 39138648 39138648 C T KRT40 Missense_Mutation p.E200K 0.06 deleterious(0) benign(0.009) TCGA-63-7021-01 17 44847163 44847163 C G WNT3 Missense_Mutation p.E192Q 0.17 deleterious(0) probably_damaging(0.929) TCGA-63-7021-01 17 51901675 51901675 A T KIF2B Silent p.A427A 0.11 TCGA-63-7021-01 17 54431298 54431298 C T ANKFN1 Silent p.L167L 0.09 TCGA-63-7021-01 17 74562133 74562133 G T ST6GALNAC2 3'UTR 0.16 TCGA-63-7021-01 17 7578499 7578499 T G TP53 Missense_Mutation p.Q144P 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-63-7021-01 17 80583358 80583358 T A WDR45B Missense_Mutation p.I112F 0.21 deleterious(0.05) probably_damaging(0.943) TCGA-63-7021-01 18 22805957 22805957 T C ZNF521 Missense_Mutation p.K642R 0.11 tolerated(0.47) possibly_damaging(0.887) TCGA-63-7021-01 18 31325512 31325512 G C ASXL3 Silent p.L1900L 0.07 TCGA-63-7021-01 18 61582891 61582891 C A SERPINB10 Silent p.T49T 0.08 TCGA-63-7021-01 18 70532904 70532904 G C NETO1 Intron 0.33 TCGA-63-7021-01 18 77105513 77105513 A G ATP9B Missense_Mutation p.Q853R 0.08 deleterious(0) probably_damaging(0.968) TCGA-63-7021-01 19 11534699 11534699 C A CCDC151 Splice_Site p.X322_splice 0.08 TCGA-63-7021-01 19 12384368 12384368 G A ZNF44 Silent p.F282F 0.09 TCGA-63-7021-01 19 31039610 31039610 G T ZNF536 Silent p.A1028A 0.18 TCGA-63-7021-01 19 36579962 36579962 C T WDR62 Silent p.I597I 0.19 TCGA-63-7021-01 19 37100767 37100767 C G ZNF382 Intron 0.09 TCGA-63-7021-01 19 40095281 40095281 T A LGALS13 Missense_Mutation p.C19S 0.13 tolerated(0.87) benign(0.012) TCGA-63-7021-01 19 40540851 40540851 T C ZNF780B Missense_Mutation p.K639E 0.18 deleterious(0) possibly_damaging(0.794) TCGA-63-7021-01 19 43237204 43237204 G T PSG3 Silent p.P147P 0.13 TCGA-63-7021-01 19 5218810 5218810 C T PTPRS Splice_Site p.X1308_splice 0.05 TCGA-63-7021-01 19 52394554 52394554 C A ZNF649 Nonsense_Mutation p.E279* 0.09 TCGA-63-7021-01 19 52568492 52568492 C T ZNF841 Silent p.E881E 0.11 TCGA-63-7021-01 19 53573382 53573382 C T ZNF160 Silent p.Q135Q 0.09 TCGA-63-7021-01 19 55179371 55179371 C G LILRB4 Missense_Mutation p.H416Q 0.10 tolerated(0.29) benign(0) TCGA-63-7021-01 19 56370157 56370157 C G NLRP4 Silent p.L466L 0.06 TCGA-63-7021-01 19 58004775 58004775 G T ZNF419 Nonsense_Mutation p.E285* 0.09 TCGA-63-7021-01 1 109192916 109192916 G T HENMT1 Missense_Mutation p.Q225K 0.18 deleterious(0) probably_damaging(0.996) TCGA-63-7021-01 1 109806324 109806324 C T CELSR2 Silent p.L1642L 0.14 TCGA-63-7021-01 1 11217332 11217332 C G MTOR Missense_Mutation p.W1449S 0.08 deleterious(0) probably_damaging(0.994) TCGA-63-7021-01 1 11345805 11345805 A G UBIAD1 Missense_Mutation p.I212V 0.15 tolerated(0.28) benign(0.001) TCGA-63-7021-01 1 118526438 118526438 A G SPAG17 Silent p.N1956N 0.16 TCGA-63-7021-01 1 151509820 151509820 T G CGN Nonstop_Mutation p.*1204Eext*58 0.24 TCGA-63-7021-01 1 152059242 152059242 G C TCHHL1 Missense_Mutation p.L306V 0.11 deleterious(0.02) possibly_damaging(0.457) TCGA-63-7021-01 1 152079772 152079772 G - TCHH 3'UTR 0.20 TCGA-63-7021-01 1 152283144 152283144 G T FLG Missense_Mutation p.D1406E 0.24 benign(0.417) TCGA-63-7021-01 1 152329178 152329178 G C FLG2 Missense_Mutation p.Q362E 0.17 unknown(0) TCGA-63-7021-01 1 154067597 154067597 C T NUP210L Nonsense_Mutation p.W667* 0.17 TCGA-63-7021-01 1 154557227 154557227 T C ADAR 3'UTR 0.10 TCGA-63-7021-01 1 155895546 155895546 C G KIAA0907 Missense_Mutation p.C257S 0.10 tolerated(0.63) benign(0.033) TCGA-63-7021-01 1 156213669 156213669 G T PAQR6 Missense_Mutation p.H347N 0.07 deleterious_low_confidence(0) unknown(0) TCGA-63-7021-01 1 156261291 156261291 G A TMEM79 Missense_Mutation p.V363M 0.29 tolerated(0.14) possibly_damaging(0.621) TCGA-63-7021-01 1 156821755 156821755 C T INSRR Missense_Mutation p.R289H 0.17 tolerated(0.12) benign(0.002) TCGA-63-7021-01 1 157557163 157557163 G A FCRL4 Silent p.T250T 0.23 TCGA-63-7021-01 1 158819046 158819047 - A MNDA 3'UTR 0.16 TCGA-63-7021-01 1 162469875 162469875 G T UHMK1 Missense_Mutation p.W133C 0.11 deleterious(0) probably_damaging(0.956) TCGA-63-7021-01 1 172051037 172051037 C T DNM3 Silent p.F496F 0.10 TCGA-63-7021-01 1 179815141 179815141 T C TOR1AIP2 3'UTR 0.19 TCGA-63-7021-01 1 182544415 182544415 T C RNASEL 3'UTR 0.15 TCGA-63-7021-01 1 205138675 205138675 T A DSTYK Missense_Mutation p.S314C 0.18 tolerated(0.07) possibly_damaging(0.765) TCGA-63-7021-01 1 215901642 215901642 C T USH2A Silent p.L3932L 0.09 TCGA-63-7021-01 1 216246553 216246553 G C USH2A Missense_Mutation p.L1888V 0.24 probably_damaging(0.927) TCGA-63-7021-01 1 216850607 216850607 C A ESRRG Missense_Mutation p.G100W 0.17 deleterious(0) probably_damaging(0.996) TCGA-63-7021-01 1 222803455 222803455 G T MIA3 Nonsense_Mutation p.E965* 0.08 TCGA-63-7021-01 1 237947340 237947340 C G RYR2 Missense_Mutation p.P4110A 0.12 possibly_damaging(0.896) TCGA-63-7021-01 1 240656583 240656583 G T GREM2 Missense_Mutation p.R65S 0.09 deleterious(0.01) possibly_damaging(0.695) TCGA-63-7021-01 1 248309230 248309230 C T OR2M5 Missense_Mutation p.R261W 0.04 deleterious(0.04) benign(0.007) TCGA-63-7021-01 1 248309390 248309390 T C OR2M5 3'Flank 0.11 TCGA-63-7021-01 1 248343545 248343545 G T OR2M2 Silent p.L86L 0.10 TCGA-63-7021-01 1 248457975 248457975 C G OR2T12 Missense_Mutation p.W302C 0.18 tolerated(0.44) benign(0.001) TCGA-63-7021-01 1 248512908 248512908 A G OR14C36 Missense_Mutation p.I278V 0.07 tolerated(1) benign(0.06) TCGA-63-7021-01 1 248616477 248616477 G T OR2T2 Missense_Mutation p.V127L 0.12 deleterious(0.01) benign(0.175) TCGA-63-7021-01 1 2494809 2494809 G C TNFRSF14 3'UTR 0.23 TCGA-63-7021-01 1 34190245 34190245 T A CSMD2 Missense_Mutation p.H879L 0.09 tolerated(0.07) possibly_damaging(0.627) TCGA-63-7021-01 1 43893355 43893355 A T SZT2 Missense_Mutation p.E1194D 0.09 tolerated(0.5) probably_damaging(0.987) TCGA-63-7021-01 1 48860965 48860965 C A SPATA6 Missense_Mutation p.R281I 0.16 tolerated(0.18) probably_damaging(0.988) TCGA-63-7021-01 1 93602255 93602255 A T MTF2 Missense_Mutation p.T485S 0.09 tolerated(0.47) possibly_damaging(0.599) TCGA-63-7021-01 20 23473678 23473678 C G CST8 Missense_Mutation p.C105W 0.12 deleterious(0.02) probably_damaging(1) TCGA-63-7021-01 20 23667790 23667790 T C CST4 Missense_Mutation p.I93V 0.17 tolerated(0.16) benign(0.006) TCGA-63-7021-01 20 30789889 30789889 G A PLAGL2 Silent p.G31G 0.07 TCGA-63-7021-01 20 31606596 31606596 G A BPIFB2 Missense_Mutation p.G275S 0.19 deleterious(0) probably_damaging(1) TCGA-63-7021-01 20 50715031 50715031 C A ZFP64 Missense_Mutation p.A90S 0.12 tolerated(1) benign(0.002) TCGA-63-7021-01 20 58381112 58381112 A T PHACTR3 Missense_Mutation p.K397N 0.11 deleterious(0) possibly_damaging(0.69) TCGA-63-7021-01 20 61453953 61453953 G A COL9A3 Missense_Mutation p.G163E 0.07 deleterious(0.02) unknown(0) TCGA-63-7021-01 20 62038193 62038193 G T KCNQ2 Missense_Mutation p.S808Y 0.19 deleterious(0) probably_damaging(1) TCGA-63-7021-01 20 62193680 62193680 T C HELZ2 Missense_Mutation p.I2120V 0.27 deleterious(0) probably_damaging(0.99) TCGA-63-7021-01 21 34923218 34923218 C G SON Missense_Mutation p.P561A 0.28 possibly_damaging(0.539) TCGA-63-7021-01 21 45655356 45655356 T A ICOSLG Missense_Mutation p.R166W 0.10 deleterious(0.02) benign(0.142) TCGA-63-7021-01 22 22843027 22843027 C T ZNF280B Missense_Mutation p.A233T 0.15 tolerated(0.63) benign(0.059) TCGA-63-7021-01 2 121747880 121747880 G A GLI2 Missense_Mutation p.G1464R 0.13 tolerated(0.62) benign(0.001) TCGA-63-7021-01 2 141260550 141260550 G T LRP1B Missense_Mutation p.P2882T 0.08 benign(0.01) TCGA-63-7021-01 2 141643839 141643839 T A LRP1B Nonsense_Mutation p.R1278* 0.13 TCGA-63-7021-01 2 185803593 185803593 C A ZNF804A Missense_Mutation p.P1157H 0.08 deleterious(0) probably_damaging(0.996) TCGA-63-7021-01 2 196583001 196583001 A G SLC39A10 Silent p.T697T 0.20 TCGA-63-7021-01 2 197706029 197706029 C T PGAP1 Missense_Mutation p.A900T 0.19 tolerated(0.62) benign(0.001) TCGA-63-7021-01 2 202245367 202245367 C A TRAK2 Missense_Mutation p.G882C 0.24 deleterious(0.03) benign(0.008) TCGA-63-7021-01 2 204599527 204599527 G A CD28 Silent p.R185R 0.14 TCGA-63-7021-01 2 206980940 206980940 T A AC007383.4 RNA 0.17 TCGA-63-7021-01 2 207006730 207006730 A T NDUFS1 Silent p.V413V 0.19 TCGA-63-7021-01 2 210640668 210640668 C T UNC80 Missense_Mutation p.S66F 0.07 probably_damaging(0.943) TCGA-63-7021-01 2 211542753 211542753 C A CPS1 3'UTR 0.15 TCGA-63-7021-01 2 220162066 220162066 G T PTPRN Silent p.S659S 0.08 TCGA-63-7021-01 2 220288534 220288534 A G DES Missense_Mutation p.N427S 0.17 tolerated(0.78) benign(0.006) TCGA-63-7021-01 2 232659025 232659025 G T COPS7B Missense_Mutation p.K97N 0.07 deleterious(0.01) probably_damaging(0.966) TCGA-63-7021-01 2 238280395 238280395 C A COL6A3 Missense_Mutation p.S1422I 0.11 possibly_damaging(0.573) TCGA-63-7021-01 2 25973122 25973122 C A ASXL2 Missense_Mutation p.A435S 0.11 tolerated(0.25) benign(0.146) TCGA-63-7021-01 2 33745660 33745660 C G RASGRP3 Missense_Mutation p.L93V 0.11 tolerated(0.25) probably_damaging(0.962) TCGA-63-7021-01 2 71360542 71360542 G A MPHOSPH10 Missense_Mutation p.D202N 0.09 deleterious(0) probably_damaging(1) TCGA-63-7021-01 2 73493694 73493694 C A FBXO41 Missense_Mutation p.R341L 0.12 deleterious(0.01) benign(0.029) TCGA-63-7021-01 2 79255015 79255015 C T REG3G Missense_Mutation p.T139I 0.14 tolerated(0.05) benign(0.094) TCGA-63-7021-01 2 80874952 80874952 G T CTNNA2 Silent p.S891S 0.10 TCGA-63-7021-01 3 109046798 109046798 C A DPPA4 3'UTR 0.09 TCGA-63-7021-01 3 112564578 112564578 T C CD200R1L 5'UTR 0.19 TCGA-63-7021-01 3 114070106 114070106 C A ZBTB20 Silent p.A273A 0.13 TCGA-63-7021-01 3 114070135 114070135 C A ZBTB20 Missense_Mutation p.G264C 0.23 deleterious(0) probably_damaging(0.998) TCGA-63-7021-01 3 121168224 121168224 T C POLQ Missense_Mutation p.Q2401R 0.23 deleterious(0) probably_damaging(1) TCGA-63-7021-01 3 126071240 126071242 CAG AT KLF15 Frame_Shift_Del p.A175Dfs*54 0.21 TCGA-63-7021-01 3 134323123 134323123 C G KY Silent p.V428V 0.09 TCGA-63-7021-01 3 13860865 13860865 C T WNT7A Missense_Mutation p.C209Y 0.20 deleterious(0) probably_damaging(1) TCGA-63-7021-01 3 154056012 154056012 C T GPR149 Missense_Mutation p.V558M 0.11 deleterious(0) probably_damaging(0.999) TCGA-63-7021-01 3 164727168 164727168 C G SI Missense_Mutation p.V1360L 0.06 deleterious(0.02) benign(0.19) TCGA-63-7021-01 3 180322057 180322057 G T TTC14 Silent p.G177G 0.15 TCGA-63-7021-01 3 183705622 183705622 C A ABCC5 Missense_Mutation p.R176L 0.20 deleterious(0) possibly_damaging(0.732) TCGA-63-7021-01 3 184295233 184295233 A G EPHB3 Missense_Mutation p.Y486C 0.32 deleterious(0) probably_damaging(0.98) TCGA-63-7021-01 3 186915475 186915475 A T RTP1 Nonsense_Mutation p.K58* 0.09 TCGA-63-7021-01 3 188123922 188123922 C G LPP Missense_Mutation p.S5C 0.04 deleterious(0) possibly_damaging(0.705) TCGA-63-7021-01 3 188202488 188202488 T - LPP Frame_Shift_Del p.V101Dfs*24 0.10 TCGA-63-7021-01 3 32932341 32932341 G T TRIM71 Missense_Mutation p.V549L 0.09 tolerated(0.67) benign(0.008) TCGA-63-7021-01 3 49348084 49348084 C T USP4 Missense_Mutation p.G308E 0.08 deleterious(0) probably_damaging(1) TCGA-63-7021-01 3 52491870 52491870 C G NISCH Missense_Mutation p.I35M 0.11 deleterious(0) probably_damaging(1) TCGA-63-7021-01 3 63601115 63601115 C A SYNPR Silent p.G272G 0.24 TCGA-63-7021-01 3 97851712 97851712 C T OR5H1 Silent p.I57I 0.11 TCGA-63-7021-01 4 104101578 104101578 G A CENPE Nonsense_Mutation p.Q378* 0.17 TCGA-63-7021-01 4 107956528 107956528 T A DKK2 Missense_Mutation p.Q74L 0.11 deleterious(0) benign(0.016) TCGA-63-7021-01 4 109578781 109578781 G C OSTC Missense_Mutation p.V137L 0.15 tolerated(0.45) benign(0.129) TCGA-63-7021-01 4 123302162 123302162 C T ADAD1 Missense_Mutation p.P63L 0.09 tolerated(0.08) benign(0.051) TCGA-63-7021-01 4 155156911 155156911 A T DCHS2 Missense_Mutation p.S2510T 0.10 tolerated(0.41) benign(0) TCGA-63-7021-01 4 155241533 155241533 G T DCHS2 Nonsense_Mutation p.S1218* 0.23 TCGA-63-7021-01 4 175896841 175896841 C A ADAM29 Silent p.I55I 0.18 TCGA-63-7021-01 4 55127410 55127410 C A PDGFRA Missense_Mutation p.S66R 0.11 tolerated(0.59) benign(0.026) TCGA-63-7021-01 4 57891648 57891648 C T POLR2B Missense_Mutation p.R1062C 0.09 deleterious(0) probably_damaging(0.989) TCGA-63-7021-01 4 59432 59432 G T ZNF595 Missense_Mutation p.R38M 0.03 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-63-7021-01 4 6335322 6335322 C T PPP2R2C Silent p.L309L 0.10 TCGA-63-7021-01 4 69688025 69688025 G T UGT2B10 Missense_Mutation p.G302C 0.13 deleterious(0) probably_damaging(1) TCGA-63-7021-01 4 76804229 76804229 C A PPEF2 Splice_Site p.X262_splice 0.08 TCGA-63-7021-01 4 89384691 89384691 G T HERC5 Missense_Mutation p.D233Y 0.09 tolerated(0.25) benign(0.002) TCGA-63-7021-01 5 111570433 111570433 T C EPB41L4A Missense_Mutation p.M329V 0.17 tolerated(0.21) benign(0.047) TCGA-63-7021-01 5 126753328 126753328 A T MEGF10 Splice_Site p.X377_splice 0.11 TCGA-63-7021-01 5 131410569 131410569 C T CSF2 Missense_Mutation p.L90F 0.08 deleterious(0.02) probably_damaging(1) TCGA-63-7021-01 5 137275923 137275923 T C FAM13B Silent p.K913K 0.16 TCGA-63-7021-01 5 140181716 140181716 G A PCDHA3 Missense_Mutation p.E312K 0.17 tolerated_low_confidence(0.17) benign(0.178) TCGA-63-7021-01 5 140306389 140306389 C A PCDHAC1 5'Flank 0.18 TCGA-63-7021-01 5 140769390 140769390 G A PCDHGB4 Missense_Mutation p.G647S 0.22 tolerated(0.06) benign(0.382) TCGA-63-7021-01 5 140774310 140774310 G T PCDHGA8 Missense_Mutation p.V644L 0.16 deleterious_low_confidence(0) possibly_damaging(0.595) TCGA-63-7021-01 5 140797866 140797866 G T PCDHGB7 Missense_Mutation p.S147I 0.23 tolerated(0.23) possibly_damaging(0.71) TCGA-63-7021-01 5 14280498 14280498 A T TRIO Silent p.R100R 0.07 TCGA-63-7021-01 5 145863120 145863120 G T TCERG1 Silent p.T680T 0.13 TCGA-63-7021-01 5 148754098 148754098 C T IL17B Missense_Mutation p.C126Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-63-7021-01 5 149602651 149602651 C A CAMK2A Missense_Mutation p.R456L 0.14 tolerated_low_confidence(0.06) benign(0.44) TCGA-63-7021-01 5 150138579 150138579 C G DCTN4 5'UTR 0.14 TCGA-63-7021-01 5 156479631 156479631 A T HAVCR1 Silent p.V138V 0.11 TCGA-63-7021-01 5 170341207 170341207 A G RANBP17 Missense_Mutation p.N266S 0.09 deleterious(0.04) benign(0.033) TCGA-63-7021-01 5 176396208 176396209 - A UIMC1 Frame_Shift_Ins p.W183Lfs*5 0.12 TCGA-63-7021-01 5 178154122 178154122 G A ZNF354A Missense_Mutation p.S13L 0.19 tolerated(0.27) benign(0.016) TCGA-63-7021-01 5 24487934 24487934 G T CDH10 Silent p.T735T 0.15 TCGA-63-7021-01 5 5239320 5239320 G T ADAMTS16 Silent p.V737V 0.16 TCGA-63-7021-01 5 68661464 68661464 C G TAF9 Missense_Mutation p.R34T 0.11 deleterious(0) probably_damaging(0.948) TCGA-63-7021-01 5 68902963 68902963 A G RP11-848G14.2 RNA 0.08 TCGA-63-7021-01 5 75914142 75914142 T C F2RL2 Silent p.V130V 0.12 TCGA-63-7021-01 5 90670950 90670950 C T ARRDC3 Missense_Mutation p.R220Q 0.11 deleterious(0.04) possibly_damaging(0.499) TCGA-63-7021-01 6 102372535 102372535 A T GRIK2 Missense_Mutation p.E603V 0.19 deleterious(0) probably_damaging(1) TCGA-63-7021-01 6 10877512 10877512 G T GCM2 Missense_Mutation p.N68K 0.23 deleterious(0) probably_damaging(1) TCGA-63-7021-01 6 121412129 121412129 C A TBC1D32 Missense_Mutation p.C1175F 0.14 deleterious(0) probably_damaging(0.978) TCGA-63-7021-01 6 129921888 129921888 C A ARHGAP18 Missense_Mutation p.A491S 0.14 tolerated(0.35) benign(0.009) TCGA-63-7021-01 6 132211536 132211536 G - ENPP1 Frame_Shift_Del p.I889Sfs*24 0.14 TCGA-63-7021-01 6 133050053 133050053 G A VNN3 Nonsense_Mutation p.Q122* 0.11 TCGA-63-7021-01 6 13801522 13801522 C T MCUR1 Missense_Mutation p.E247K 0.22 deleterious(0.01) probably_damaging(0.992) TCGA-63-7021-01 6 146127363 146127363 C T FBXO30 Missense_Mutation p.C60Y 0.14 deleterious(0) probably_damaging(1) TCGA-63-7021-01 6 30113791 30113791 C A TRIM40 Missense_Mutation p.S122R 0.09 tolerated(0.35) benign(0.007) TCGA-63-7021-01 6 30122045 30122045 C T TRIM10 Missense_Mutation p.V383M 0.31 deleterious(0) probably_damaging(1) TCGA-63-7021-01 6 39311529 39311529 A T KIF6 Missense_Mutation p.I795N 0.07 deleterious(0) probably_damaging(0.994) TCGA-63-7021-01 6 64423111 64423111 C T PHF3 Missense_Mutation p.S1876L 0.12 deleterious(0) benign(0.23) TCGA-63-7021-01 6 72806828 72806828 C T RIMS1 Missense_Mutation p.A141V 0.11 deleterious(0) probably_damaging(0.987) TCGA-63-7021-01 6 83754377 83754377 T C UBE3D Missense_Mutation p.K123E 0.16 tolerated(0.08) benign(0.049) TCGA-63-7021-01 6 88854438 88854438 G - CNR1 Frame_Shift_Del p.R186Afs*54 0.15 TCGA-63-7021-01 6 90572833 90572833 A C CASP8AP2 RNA 0.13 TCGA-63-7021-01 7 100682341 100682341 T A MUC17 Silent p.T2548T 0.12 TCGA-63-7021-01 7 117450911 117450911 G - CTTNBP2 Frame_Shift_Del p.L108Sfs*65 0.15 TCGA-63-7021-01 7 119915309 119915309 C T KCND2 Missense_Mutation p.P208L 0.21 deleterious(0.01) probably_damaging(1) TCGA-63-7021-01 7 123109383 123109383 G A IQUB Missense_Mutation p.T489M 0.08 deleterious(0) probably_damaging(0.996) TCGA-63-7021-01 7 123152117 123152117 T G IQUB Missense_Mutation p.Q93P 0.10 tolerated_low_confidence(0.24) benign(0) TCGA-63-7021-01 7 123267161 123267161 C A ASB15 Intron 0.23 TCGA-63-7021-01 7 136700296 136700296 A T CHRM2 Missense_Mutation p.Q228H 0.22 tolerated(0.2) possibly_damaging(0.722) TCGA-63-7021-01 7 13971275 13971275 T C ETV1 Silent p.P218P 0.14 TCGA-63-7021-01 7 142028580 142028580 C A TRBV6-1 Missense_Mutation p.T105K 0.15 deleterious(0) probably_damaging(0.995) TCGA-63-7021-01 7 150217051 150217051 C G GIMAP7 5'UTR 0.13 TCGA-63-7021-01 7 31014597 31014597 T C GHRHR Missense_Mutation p.L275P 0.14 tolerated(0.07) probably_damaging(0.956) TCGA-63-7021-01 7 37382321 37382321 A G ELMO1 5'UTR 0.12 TCGA-63-7021-01 7 57528531 57528531 G T ZNF716 Missense_Mutation p.D122Y 0.17 deleterious(0) benign(0.015) TCGA-63-7021-01 7 75172194 75172194 C A HIP1 Missense_Mutation p.G956C 0.13 tolerated(0.07) probably_damaging(0.929) TCGA-63-7021-01 7 88965528 88965528 C - ZNF804B Frame_Shift_Del p.P1078Rfs*8 0.13 TCGA-63-7021-01 7 89854564 89854564 G - STEAP2 Frame_Shift_Del p.V57Sfs*2 0.13 TCGA-63-7021-01 7 98453639 98453639 C A TMEM130 Splice_Site p.X240_splice 0.19 TCGA-63-7021-01 8 113363430 113363430 C A CSMD3 Missense_Mutation p.W2100L 0.27 deleterious(0.01) possibly_damaging(0.823) TCGA-63-7021-01 8 125015485 125015485 T A FER1L6 Missense_Mutation p.L533H 0.14 tolerated(0.16) benign(0.006) TCGA-63-7021-01 8 139153568 139153568 G A FAM135B Silent p.N1221N 0.17 TCGA-63-7021-01 8 142498650 142498650 C T MROH5 Splice_Site 0.15 TCGA-63-7021-01 8 144893090 144893090 G A SCRIB Missense_Mutation p.P420L 0.15 possibly_damaging(0.818) TCGA-63-7021-01 8 18662033 18662033 T C PSD3 Missense_Mutation p.R637G 0.12 deleterious(0) possibly_damaging(0.85) TCGA-63-7021-01 8 30694549 30694549 G A TEX15 Missense_Mutation p.A2701V 0.15 tolerated(1) benign(0.001) TCGA-63-7021-01 8 3087589 3087589 A C CSMD1 Missense_Mutation p.W1440G 0.19 probably_damaging(0.999) TCGA-63-7021-01 9 107361604 107361604 T G OR13C5 Missense_Mutation p.I31L 0.35 deleterious(0.04) benign(0.111) TCGA-63-7021-01 9 107593233 107593233 A G ABCA1 Missense_Mutation p.M622T 0.24 deleterious(0) benign(0.012) TCGA-63-7021-01 9 133542187 133542187 T C PRDM12 Splice_Site p.X138_splice 0.29 TCGA-63-7021-01 9 137779297 137779297 A G FCN2 3'UTR 0.36 TCGA-63-7021-01 9 21384985 21384985 A T IFNA2 Missense_Mutation p.L115Q 0.22 deleterious(0.03) probably_damaging(0.984) TCGA-63-7021-01 9 21384986 21384986 G T IFNA2 Missense_Mutation p.L115M 0.23 deleterious(0.03) possibly_damaging(0.887) TCGA-63-7021-01 9 32633150 32633150 C G TAF1L Missense_Mutation p.V810L 0.12 deleterious(0) probably_damaging(0.945) TCGA-63-7021-01 9 95768325 95768325 G T FGD3 Missense_Mutation p.G234W 0.19 deleterious(0) probably_damaging(1) TCGA-63-7021-01 X 107159231 107159231 G C MID2 Splice_Site p.X358_splice 0.13 TCGA-63-7021-01 X 109764527 109764527 C A TDGF1P3 RNA 0.30 TCGA-63-7021-01 X 138708387 138708387 G A MCF2 Silent p.L278L 0.10 TCGA-63-7021-01 X 26213006 26213006 G C MAGEB6 Missense_Mutation p.C348S 0.17 tolerated(0.22) benign(0.04) TCGA-63-7021-01 X 49840479 49840479 G T CLCN5 Missense_Mutation p.A149S 0.32 tolerated(0.21) benign(0.091) TCGA-63-7021-01 X 73744474 73744474 A G SLC16A2 Missense_Mutation p.S286G 0.33 tolerated(0.15) benign(0.179) TCGA-63-7021-01 X 76938505 76938505 G C ATRX Missense_Mutation p.S748C 0.25 probably_damaging(0.997) TCGA-63-7021-01 X 90691372 90691372 G T PABPC5 Nonsense_Mutation p.G266* 0.28 TCGA-63-7022-01 10 17865370 17865370 G C MRC1L1 Missense_Mutation p.G120A 0.13 possibly_damaging(0.617) TCGA-63-7022-01 10 27324584 27324584 T C ANKRD26 Missense_Mutation p.K932R 0.20 tolerated(0.27) benign(0.052) TCGA-63-7022-01 10 3143644 3143644 G T PFKP Missense_Mutation p.G118C 0.13 deleterious(0) possibly_damaging(0.883) TCGA-63-7022-01 10 38241691 38241691 G A ZNF25 Silent p.L245L 0.12 TCGA-63-7022-01 10 43662511 43662511 A G CSGALNACT2 Missense_Mutation p.N407D 0.09 tolerated(0.65) benign(0.307) TCGA-63-7022-01 10 51464675 51464675 T A AGAP7 Missense_Mutation p.E594V 0.22 tolerated(0.16) benign(0.304) TCGA-63-7022-01 10 52566582 52566582 T C A1CF Silent p.V564V 0.09 TCGA-63-7022-01 10 55755371 55755371 A C PCDH15 Intron 0.14 TCGA-63-7022-01 10 61012614 61012614 T G FAM13C Missense_Mutation p.K493Q 0.27 tolerated(0.15) probably_damaging(0.962) TCGA-63-7022-01 10 61424015 61424015 G A SLC16A9 Nonsense_Mutation p.R136* 0.04 TCGA-63-7022-01 10 61844534 61844534 T C ANK3 Silent p.Q1300Q 0.07 TCGA-63-7022-01 10 61898789 61898789 C G ANK3 Missense_Mutation p.E891Q 0.08 probably_damaging(0.936) TCGA-63-7022-01 10 7825117 7825117 T C KIN Missense_Mutation p.M46V 0.10 deleterious(0.02) benign(0.08) TCGA-63-7022-01 10 88702992 88702992 C T MMRN2 Missense_Mutation p.E517K 0.12 tolerated(0.11) benign(0.051) TCGA-63-7022-01 11 102220700 102220700 A G BIRC2 Missense_Mutation p.M39V 0.11 tolerated(0.16) benign(0.014) TCGA-63-7022-01 11 102593282 102593282 C A MMP8 Silent p.T75T 0.10 TCGA-63-7022-01 11 124310044 124310044 T C OR8B8 3'UTR 0.13 TCGA-63-7022-01 11 124412840 124412840 A G OR8B12 Silent p.F237F 0.14 TCGA-63-7022-01 11 129802104 129802104 G A PRDM10 Nonsense_Mutation p.R394* 0.14 TCGA-63-7022-01 11 5080687 5080687 T C OR52E2 Silent p.L57L 0.14 TCGA-63-7022-01 11 5080702 5080702 C T OR52E2 Silent p.K52K 0.13 TCGA-63-7022-01 11 57995797 57995797 C T OR10Q1 Missense_Mutation p.C184Y 0.12 deleterious(0.01) probably_damaging(1) TCGA-63-7022-01 11 59612956 59612956 C T GIF 5'UTR 0.08 TCGA-63-7022-01 11 62747232 62747232 A T SLC22A6 Missense_Mutation p.I409N 0.08 deleterious(0) probably_damaging(0.94) TCGA-63-7022-01 11 62782156 62782156 A T SLC22A8 Missense_Mutation p.M92K 0.15 deleterious(0) benign(0.021) TCGA-63-7022-01 11 65319783 65319783 G C LTBP3 Silent p.L427L 0.10 TCGA-63-7022-01 11 65998276 65998276 C G PACS1 Missense_Mutation p.S497R 0.14 tolerated(0.09) benign(0.015) TCGA-63-7022-01 11 7669627 7669627 T C PPFIBP2 Silent p.N552N 0.10 TCGA-63-7022-01 11 82642807 82642807 G T C11orf82 Missense_Mutation p.A143S 0.16 tolerated(1) benign(0.001) TCGA-63-7022-01 11 92523168 92523168 C A FAT3 Nonsense_Mutation p.Y1465* 0.14 TCGA-63-7022-01 12 10588588 10588588 C A KLRC2 5'UTR 0.09 TCGA-63-7022-01 12 112691887 112691887 C T HECTD4 Missense_Mutation p.R990H 0.16 possibly_damaging(0.481) TCGA-63-7022-01 12 11461684 11461684 G A PRB4 Missense_Mutation p.P78L 0.07 deleterious_low_confidence(0.02) unknown(0) TCGA-63-7022-01 12 12491381 12491381 C G MANSC1 Missense_Mutation p.G113R 0.09 deleterious(0) probably_damaging(1) TCGA-63-7022-01 12 129569227 129569227 G T TMEM132D Nonsense_Mutation p.Y488* 0.10 TCGA-63-7022-01 12 22069983 22069983 T C ABCC9 Missense_Mutation p.K154R 0.11 tolerated(0.22) benign(0.005) TCGA-63-7022-01 12 4479940 4479940 C T FGF23 Missense_Mutation p.D109N 0.12 tolerated(0.45) benign(0) TCGA-63-7022-01 12 49444762 49444762 C A KMT2D Nonsense_Mutation p.E902* 0.11 TCGA-63-7022-01 12 53233022 53233022 G T KRT78 Missense_Mutation p.L480M 0.13 tolerated(0.11) benign(0.047) TCGA-63-7022-01 12 57968991 57968991 A G KIF5A Missense_Mutation p.E614G 0.07 deleterious(0) possibly_damaging(0.725) TCGA-63-7022-01 12 68646417 68646417 C G IL22 Missense_Mutation p.R88P 0.11 deleterious(0.01) probably_damaging(0.961) TCGA-63-7022-01 12 88420828 88420828 C T C12orf50 5'UTR 0.11 TCGA-63-7022-01 12 96260955 96260955 G T CCDC38 Missense_Mutation p.L531I 0.13 deleterious(0) probably_damaging(0.999) TCGA-63-7022-01 13 108882359 108882359 G T ABHD13 Nonsense_Mutation p.G265* 0.12 TCGA-63-7022-01 13 108882360 108882360 G T ABHD13 Missense_Mutation p.G265V 0.14 deleterious(0) probably_damaging(1) TCGA-63-7022-01 13 111132619 111132619 G A COL4A2 Silent p.V880V 0.08 TCGA-63-7022-01 13 23905545 23905545 C - SACS Frame_Shift_Del p.G4157Afs*17 0.10 TCGA-63-7022-01 14 101005332 101005332 G C BEGAIN Silent p.T252T 0.14 TCGA-63-7022-01 14 105478236 105478236 C A CDCA4 Missense_Mutation p.V11F 0.15 tolerated(0.71) benign(0.003) TCGA-63-7022-01 14 106667638 106667638 C A IGHV3-20 Silent p.L98L 0.11 TCGA-63-7022-01 14 106667639 106667639 A C IGHV3-20 Missense_Mutation p.L98R 0.11 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-63-7022-01 14 106733559 106733559 G T IGHV1-24 Silent p.I7I 0.08 TCGA-63-7022-01 14 20825760 20825760 G C PARP2 Intron 0.13 TCGA-63-7022-01 14 42356879 42356879 G A LRFN5 Missense_Mutation p.D351N 0.18 deleterious(0) probably_damaging(0.996) TCGA-63-7022-01 14 42356880 42356880 A T LRFN5 Missense_Mutation p.D351V 0.19 deleterious(0) probably_damaging(0.996) TCGA-63-7022-01 14 45473305 45473305 T - FAM179B Frame_Shift_Del p.F794Lfs*105 0.17 TCGA-63-7022-01 14 62547948 62547948 G T SYT16 Nonsense_Mutation p.E464* 0.09 TCGA-63-7022-01 14 68256212 68256212 T A ZFYVE26 Silent p.L953L 0.12 TCGA-63-7022-01 14 70925482 70925482 T A ADAM21 Nonsense_Mutation p.C422* 0.10 TCGA-63-7022-01 14 94935608 94935608 T A SERPINA9 Silent p.I208I 0.05 TCGA-63-7022-01 15 25230282 25230282 A C SNORD64 RNA 0.12 TCGA-63-7022-01 15 25339118 25339118 G A SNORD116-25 5'Flank 0.11 TCGA-63-7022-01 15 32972078 32972078 A G SCG5 Missense_Mutation p.Y113C 0.05 deleterious(0) probably_damaging(0.999) TCGA-63-7022-01 15 40764027 40764027 C G CHST14 Missense_Mutation p.H205Q 0.09 deleterious(0.02) possibly_damaging(0.894) TCGA-63-7022-01 15 54919268 54919268 T A UNC13C Missense_Mutation p.V2201E 0.17 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-63-7022-01 15 66007850 66007850 G A DENND4A Missense_Mutation p.A640V 0.09 deleterious(0.01) possibly_damaging(0.627) TCGA-63-7022-01 15 67879200 67879200 G T MAP2K5 Missense_Mutation p.G127V 0.07 tolerated(0.09) benign(0.115) TCGA-63-7022-01 15 69324009 69324009 C A NOX5 Silent p.I159I 0.16 TCGA-63-7022-01 15 76494559 76494559 C T C15orf27 Silent p.D325D 0.05 TCGA-63-7022-01 15 89169832 89169832 G T AEN Missense_Mutation p.R131L 0.11 deleterious(0) probably_damaging(0.964) TCGA-63-7022-01 15 89870415 89870415 C A POLG Missense_Mutation p.Q472H 0.12 tolerated(0.16) benign(0.078) TCGA-63-7022-01 16 11071230 11071230 G A CLEC16A Missense_Mutation p.V293M 0.21 deleterious(0) possibly_damaging(0.782) TCGA-63-7022-01 16 12618661 12618661 A G SNX29 Missense_Mutation p.K761E 0.09 tolerated(0.65) benign(0.012) TCGA-63-7022-01 16 28847784 28847784 G T ATXN2L Missense_Mutation p.D1093Y 0.06 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-63-7022-01 16 28943864 28943864 C A CD19 Missense_Mutation p.L96M 0.17 deleterious(0) probably_damaging(0.934) TCGA-63-7022-01 16 30518084 30518084 G A ITGAL Silent p.L805L 0.10 TCGA-63-7022-01 16 50745595 50745595 C T NOD2 Silent p.V591V 0.19 TCGA-63-7022-01 16 53692791 53692791 C G RPGRIP1L Splice_Site p.X415_splice 0.10 TCGA-63-7022-01 16 56864520 56864520 G A NUP93 Silent p.Q336Q 0.06 TCGA-63-7022-01 16 66426402 66426402 G A CDH5 Intron 0.14 TCGA-63-7022-01 16 72166631 72166631 C G PMFBP1 Intron 0.11 TCGA-63-7022-01 16 72166632 72166632 C A PMFBP1 Intron 0.11 TCGA-63-7022-01 16 90160460 90160460 G A TUBB8P7 Intron 0.31 TCGA-63-7022-01 17 51901871 51901871 C A KIF2B Missense_Mutation p.P493T 0.20 deleterious(0) probably_damaging(1) TCGA-63-7022-01 17 61684718 61684718 G T TACO1 Missense_Mutation p.R196I 0.26 deleterious(0.05) benign(0.048) TCGA-63-7022-01 17 7577106 7577106 G C TP53 Missense_Mutation p.P278A 0.13 deleterious(0.01) probably_damaging(1) TCGA-63-7022-01 17 76459147 76459147 C T DNAH17 Missense_Mutation p.A2971T 0.09 benign(0.002) TCGA-63-7022-01 17 7662390 7662390 T C DNAH2 Missense_Mutation p.V799A 0.16 benign(0.206) TCGA-63-7022-01 18 42531660 42531660 G T SETBP1 Silent p.G785G 0.13 TCGA-63-7022-01 18 43685318 43685318 T C HAUS1 Silent p.S63S 0.18 TCGA-63-7022-01 18 56203844 56203844 C A ALPK2 Missense_Mutation p.R1192M 0.13 deleterious(0.02) benign(0.351) TCGA-63-7022-01 18 67406316 67406316 C T DOK6 Silent p.L239L 0.10 TCGA-63-7022-01 19 1036164 1036164 T C CNN2 Silent p.I142I 0.11 TCGA-63-7022-01 19 10464890 10464890 G C TYK2 Missense_Mutation p.S912R 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-63-7022-01 19 14951857 14951857 T G OR7A10 Missense_Mutation p.Y278S 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-63-7022-01 19 16472567 16472567 C A EPS15L1 Intron 0.13 TCGA-63-7022-01 19 22155403 22155403 G C ZNF208 Silent p.G811G 0.10 TCGA-63-7022-01 19 30193829 30193829 C A C19orf12 Silent p.P83P 0.18 TCGA-63-7022-01 19 39037100 39037100 G T RYR1 Nonsense_Mutation p.E4010* 0.05 TCGA-63-7022-01 19 42132037 42132037 G T CEACAM4 Missense_Mutation p.T121N 0.07 deleterious(0) possibly_damaging(0.899) TCGA-63-7022-01 19 4516653 4516653 C T PLIN4 Silent p.E63E 0.23 TCGA-63-7022-01 19 46915207 46915207 C G CCDC8 Missense_Mutation p.Q287H 0.21 benign(0.046) TCGA-63-7022-01 19 51650496 51650496 G A SIGLEC7 Silent p.K381K 0.24 TCGA-63-7022-01 19 51986517 51986517 T C CEACAM18 Missense_Mutation p.M368T 0.30 deleterious(0.01) benign(0.396) TCGA-63-7022-01 19 52658722 52658722 C A ZNF836 Silent p.T738T 0.17 TCGA-63-7022-01 19 55175832 55175832 C A LILRB4 Missense_Mutation p.P184H 0.10 deleterious(0) possibly_damaging(0.732) TCGA-63-7022-01 19 58929118 58929118 G A ZNF584 Silent p.E411E 0.09 TCGA-63-7022-01 19 6312269 6312269 T G ACER1 Missense_Mutation p.S81R 0.07 deleterious(0) probably_damaging(1) TCGA-63-7022-01 1 101190258 101190258 C A VCAM1 Missense_Mutation p.S247Y 0.15 tolerated(0.36) possibly_damaging(0.836) TCGA-63-7022-01 1 153430296 153430296 C T S100A7 Missense_Mutation p.G98R 0.11 tolerated(0.17) benign(0.016) TCGA-63-7022-01 1 153958602 153958605 GTAA - RAB13 Frame_Shift_Del p.Y37Sfs*15 0.13 TCGA-63-7022-01 1 155014271 155014271 C T DCST1 Missense_Mutation p.P277L 0.10 deleterious(0) probably_damaging(0.988) TCGA-63-7022-01 1 156354614 156354614 G T RHBG 3'UTR 0.16 TCGA-63-7022-01 1 1565856 1565856 C G MIB2 Missense_Mutation p.S1053R 0.19 tolerated(0.2) benign(0.428) TCGA-63-7022-01 1 158517451 158517451 G T OR6Y1 Missense_Mutation p.L149M 0.11 tolerated(0.06) possibly_damaging(0.802) TCGA-63-7022-01 1 179620182 179620182 C T TDRD5 Nonsense_Mutation p.R661* 0.07 TCGA-63-7022-01 1 19168269 19168269 G C TAS1R2 Missense_Mutation p.F515L 0.06 deleterious(0) probably_damaging(1) TCGA-63-7022-01 1 19549166 19549166 T A EMC1 Missense_Mutation p.M847L 0.08 tolerated(0.16) benign(0.015) TCGA-63-7022-01 1 21097567 21097567 C G HP1BP3 Splice_Site p.X171_splice 0.11 TCGA-63-7022-01 1 234510076 234510076 G T COA6 Missense_Mutation p.D75Y 0.12 deleterious(0) probably_damaging(0.972) TCGA-63-7022-01 1 237957224 237957224 G A RYR2 Missense_Mutation p.G4614R 0.11 probably_damaging(0.972) TCGA-63-7022-01 1 248569542 248569542 A G OR2T1 Missense_Mutation p.I83V 0.10 tolerated(1) benign(0.002) TCGA-63-7022-01 1 248789735 248789735 T C OR2T11 Missense_Mutation p.K232R 0.10 tolerated(0.53) benign(0.013) TCGA-63-7022-01 1 28816292 28816292 G C PHACTR4 Intron 0.08 TCGA-63-7022-01 1 29618465 29618465 A G PTPRU Silent p.T811T 0.07 TCGA-63-7022-01 1 31426668 31426668 G A PUM1 Silent p.G828G 0.13 TCGA-63-7022-01 1 34330003 34330003 T C HMGB4 Missense_Mutation p.Y71H 0.16 deleterious(0.01) probably_damaging(1) TCGA-63-7022-01 1 50642825 50642825 C T ELAVL4 Silent p.N122N 0.12 TCGA-63-7022-01 1 59158588 59158588 T C MYSM1 Missense_Mutation p.N55D 0.08 deleterious(0.03) benign(0.05) TCGA-63-7022-01 1 66833487 66833487 T C PDE4B Missense_Mutation p.L498P 0.12 deleterious(0.01) probably_damaging(1) TCGA-63-7022-01 1 67292646 67292646 C T WDR78 Nonsense_Mutation p.W732* 0.13 TCGA-63-7022-01 1 75039000 75039000 C T C1orf173 Nonsense_Mutation p.W798* 0.09 TCGA-63-7022-01 1 75681503 75681503 A C SLC44A5 Missense_Mutation p.L555R 0.14 deleterious(0) probably_damaging(0.976) TCGA-63-7022-01 20 2796027 2796027 C A C20orf141 Missense_Mutation p.S66Y 0.16 deleterious(0.01) possibly_damaging(0.781) TCGA-63-7022-01 20 2843947 2843947 G A VPS16 Missense_Mutation p.R460Q 0.09 deleterious(0) probably_damaging(0.999) TCGA-63-7022-01 20 34262983 34262983 G A NFS1 Missense_Mutation p.A311V 0.07 deleterious(0.01) probably_damaging(0.927) TCGA-63-7022-01 20 43955954 43955954 C A SDC4 Missense_Mutation p.G183C 0.09 deleterious(0) probably_damaging(0.997) TCGA-63-7022-01 20 62121899 62121899 C A EEF1A2 Missense_Mutation p.R321L 0.09 deleterious_low_confidence(0) benign(0.192) TCGA-63-7022-01 21 22804429 22804429 C A NCAM2 Missense_Mutation p.D494E 0.13 tolerated(0.42) benign(0.009) TCGA-63-7022-01 21 30909641 30909641 C T GRIK1 Silent p.K920K 0.08 TCGA-63-7022-01 21 34924901 34924901 C T SON Missense_Mutation p.R1122C 0.13 possibly_damaging(0.689) TCGA-63-7022-01 21 43702440 43702440 G A ABCG1 Silent p.G215G 0.14 TCGA-63-7022-01 22 44022541 44022541 A G EFCAB6 Missense_Mutation p.F751L 0.10 tolerated(0.15) possibly_damaging(0.577) TCGA-63-7022-01 22 45210622 45210622 T C ARHGAP8 Silent p.L246L 0.10 TCGA-63-7022-01 2 116572500 116572500 T G DPP10 Missense_Mutation p.I615S 0.11 tolerated(0.09) benign(0.087) TCGA-63-7022-01 2 141272315 141272315 C T LRP1B Missense_Mutation p.A2726T 0.14 possibly_damaging(0.787) TCGA-63-7022-01 2 145162583 145162583 C T ZEB2 Missense_Mutation p.A138T 0.10 tolerated(0.65) benign(0.001) TCGA-63-7022-01 2 171704223 171704223 C T GAD1 Missense_Mutation p.T347M 0.10 deleterious(0) probably_damaging(0.996) TCGA-63-7022-01 2 179639038 179639038 C T TTN Missense_Mutation p.R2318H 0.05 TCGA-63-7022-01 2 182430239 182430239 T C CERKL Splice_Site p.X226_splice 0.20 TCGA-63-7022-01 2 215609884 215609884 C G BARD1 Splice_Site p.X604_splice 0.18 TCGA-63-7022-01 2 220432456 220432456 C T OBSL1 Silent p.T506T 0.10 TCGA-63-7022-01 2 225729742 225729742 A C DOCK10 Silent p.A440A 0.15 TCGA-63-7022-01 2 238285527 238285527 G A COL6A3 Silent p.I986I 0.08 TCGA-63-7022-01 2 26569012 26569012 C G EPT1 5'UTR 0.25 TCGA-63-7022-01 2 37580016 37580016 G A QPCT Missense_Mutation p.D69N 0.15 tolerated(0.27) possibly_damaging(0.833) TCGA-63-7022-01 2 56419919 56419919 A T CCDC85A Missense_Mutation p.Q195L 0.09 tolerated(0.13) possibly_damaging(0.601) TCGA-63-7022-01 2 67637078 67637078 G C ETAA1 Missense_Mutation p.E897Q 0.06 tolerated(0.07) probably_damaging(0.984) TCGA-63-7022-01 2 79349989 79349989 G T REG1A Missense_Mutation p.S115I 0.27 deleterious(0) probably_damaging(0.945) TCGA-63-7022-01 2 79384726 79384726 G A REG3A Silent p.G144G 0.21 TCGA-63-7022-01 2 9650196 9650196 C A ADAM17 Missense_Mutation p.G419V 0.17 deleterious(0.01) benign(0.024) TCGA-63-7022-01 2 99012481 99012481 G A CNGA3 Missense_Mutation p.R283Q 0.21 deleterious(0.01) probably_damaging(0.979) TCGA-63-7022-01 3 108216934 108216934 T C MYH15 Missense_Mutation p.T215A 0.10 deleterious(0.03) benign(0.021) TCGA-63-7022-01 3 111312481 111312481 C A ZBED2 Nonsense_Mutation p.E190* 0.13 TCGA-63-7022-01 3 123359260 123359260 C T MYLK Missense_Mutation p.E1571K 0.07 deleterious(0.01) possibly_damaging(0.631) TCGA-63-7022-01 3 142116238 142116238 T C XRN1 Missense_Mutation p.K758E 0.19 tolerated(0.09) benign(0.074) TCGA-63-7022-01 3 142681676 142681676 C A PAQR9 Missense_Mutation p.S168I 0.18 deleterious(0) probably_damaging(0.995) TCGA-63-7022-01 3 160232915 160232915 T C KPNA4 Intron 0.22 TCGA-63-7022-01 3 176755951 176755951 T G TBL1XR1 Missense_Mutation p.N353H 0.08 deleterious(0) probably_damaging(0.983) TCGA-63-7022-01 3 186769039 186769039 G C ST6GAL1 Missense_Mutation p.D204H 0.11 possibly_damaging(0.537) TCGA-63-7022-01 3 51897389 51897389 G T IQCF2 3'UTR 0.07 TCGA-63-7022-01 3 64527543 64527543 T G ADAMTS9 Missense_Mutation p.E1723A 0.16 tolerated(0.97) benign(0.021) TCGA-63-7022-01 3 6903491 6903491 G C GRM7 Missense_Mutation p.G139A 0.13 deleterious(0.01) possibly_damaging(0.622) TCGA-63-7022-01 3 89528555 89528555 A G EPHA3 Missense_Mutation p.K952R 0.07 tolerated(0.66) probably_damaging(0.996) TCGA-63-7022-01 4 110791271 110791271 A C LRIT3 Missense_Mutation p.K456Q 0.09 tolerated(0.59) benign(0.033) TCGA-63-7022-01 4 151835369 151835369 T A LRBA Missense_Mutation p.Y380F 0.03 tolerated(0.14) probably_damaging(0.986) TCGA-63-7022-01 4 42505498 42505498 C A ATP8A1 Missense_Mutation p.G707V 0.11 tolerated(0.16) probably_damaging(1) TCGA-63-7022-01 4 55971106 55971106 T A KDR Missense_Mutation p.Q564L 0.10 tolerated(0.17) benign(0.41) TCGA-63-7022-01 4 69344609 69344609 T C TMPRSS11E Missense_Mutation p.I337T 0.18 deleterious(0) probably_damaging(0.986) TCGA-63-7022-01 4 70152596 70152596 C T UGT2B28 Nonsense_Mutation p.Q333* 0.14 TCGA-63-7022-01 4 96171801 96171802 - T UNC5C Frame_Shift_Ins p.N204Kfs*2 0.08 TCGA-63-7022-01 5 1221842 1221842 C G SLC6A19 Missense_Mutation p.I576M 0.08 tolerated(0.12) benign(0.361) TCGA-63-7022-01 5 127670910 127670910 G T FBN2 Missense_Mutation p.L1309I 0.10 deleterious(0.03) possibly_damaging(0.905) TCGA-63-7022-01 5 127670911 127670911 G T FBN2 Nonsense_Mutation p.C1308* 0.10 TCGA-63-7022-01 5 154395626 154395626 A G KIF4B Missense_Mutation p.K736R 0.12 deleterious(0.04) benign(0.001) TCGA-63-7022-01 5 24487751 24487751 G C CDH10 3'UTR 0.17 TCGA-63-7022-01 5 37170408 37170408 A C C5orf42 Missense_Mutation p.L2066R 0.08 deleterious(0) probably_damaging(0.991) TCGA-63-7022-01 5 7820800 7820800 C T ADCY2 Nonsense_Mutation p.Q1041* 0.09 TCGA-63-7022-01 6 112451233 112451233 C G LAMA4 Silent p.L1326L 0.05 TCGA-63-7022-01 6 123588855 123588855 T C TRDN Missense_Mutation p.T594A 0.23 tolerated_low_confidence(0.05) possibly_damaging(0.86) TCGA-63-7022-01 6 145021253 145021253 G A UTRN Nonsense_Mutation p.W2561* 0.13 TCGA-63-7022-01 6 152529281 152529281 C A SYNE1 Missense_Mutation p.R7550S 0.13 possibly_damaging(0.849) TCGA-63-7022-01 6 152529282 152529282 C A SYNE1 Missense_Mutation p.R7550M 0.12 probably_damaging(0.995) TCGA-63-7022-01 6 152655249 152655249 A G SYNE1 Silent p.L4230L 0.16 TCGA-63-7022-01 6 152757197 152757197 C G SYNE1 Missense_Mutation p.E1397Q 0.11 benign(0.117) TCGA-63-7022-01 6 160109237 160109237 C T SOD2 Silent p.L88L 0.05 TCGA-63-7022-01 6 160500663 160500663 G T IGF2R Missense_Mutation p.G1844W 0.18 deleterious(0.01) probably_damaging(0.97) TCGA-63-7022-01 6 160501268 160501268 G T IGF2R Missense_Mutation p.D1932Y 0.19 deleterious(0) benign(0.148) TCGA-63-7022-01 6 170013691 170013691 C A WDR27 Missense_Mutation p.G762V 0.18 deleterious(0) probably_damaging(0.972) TCGA-63-7022-01 6 24596847 24596847 C G KIAA0319 Splice_Site p.X19_splice 0.05 TCGA-63-7022-01 6 29323430 29323430 G T OR5V1 Silent p.I181I 0.21 TCGA-63-7022-01 6 36287268 36287268 G C C6orf222 Silent p.R596R 0.08 TCGA-63-7022-01 6 90421912 90421912 C T MDN1 Silent p.L2498L 0.05 TCGA-63-7022-01 6 96651295 96651295 C G FUT9 Missense_Mutation p.I88M 0.06 deleterious(0.04) probably_damaging(0.976) TCGA-63-7022-01 6 96651623 96651623 C G FUT9 Missense_Mutation p.P198A 0.10 deleterious(0.04) possibly_damaging(0.516) TCGA-63-7022-01 7 100679355 100679355 C T MUC17 Missense_Mutation p.S1553L 0.14 unknown(0) TCGA-63-7022-01 7 103969267 103969267 G T LHFPL3 Missense_Mutation p.A14S 0.23 tolerated(0.54) possibly_damaging(0.709) TCGA-63-7022-01 7 37989830 37989830 C T EPDR1 Silent p.V169V 0.13 TCGA-63-7022-01 7 73008536 73008536 C G MLXIPL Intron 0.16 TCGA-63-7022-01 7 7612316 7612316 T G MIOS Silent p.L70L 0.15 TCGA-63-7022-01 7 87183194 87183194 T A ABCB1 Silent p.T294T 0.12 TCGA-63-7022-01 7 87838751 87838751 G A SRI Silent p.P138P 0.11 TCGA-63-7022-01 7 899956 899956 C T SUN1 Silent p.L572L 0.18 TCGA-63-7022-01 7 91641769 91641769 C T AKAP9 Silent p.A1115A 0.22 TCGA-63-7022-01 8 106814801 106814801 G T ZFPM2 Missense_Mutation p.D831Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-63-7022-01 8 113246680 113246680 G T CSMD3 Missense_Mutation p.L3552I 0.09 deleterious(0) possibly_damaging(0.549) TCGA-63-7022-01 8 139165340 139165340 G T FAM135B Missense_Mutation p.L460I 0.12 tolerated(0.23) benign(0.004) TCGA-63-7022-01 8 23159660 23159660 G A LOXL2 Silent p.Y671Y 0.06 TCGA-63-7022-01 8 71075030 71075037 CCTCCCAG - NCOA2 Frame_Shift_Del p.W296Pfs*14 0.10 TCGA-63-7022-01 8 92090773 92090773 G C OTUD6B Missense_Mutation p.E199Q 0.11 tolerated(0.34) benign(0.037) TCGA-63-7022-01 9 123770748 123770748 C T C5 Silent p.K762K 0.12 TCGA-63-7022-01 9 124522669 124522669 A G DAB2IP Missense_Mutation p.E346G 0.14 deleterious(0) probably_damaging(0.997) TCGA-63-7022-01 9 131271189 131271189 T A GLE1 Missense_Mutation p.L45Q 0.13 deleterious(0) probably_damaging(0.967) TCGA-63-7022-01 9 139301690 139301690 G C SDCCAG3 Silent p.A242A 0.17 TCGA-63-7022-01 9 17787399 17787399 G T SH3GL2 Missense_Mutation p.G118V 0.12 deleterious(0) probably_damaging(0.99) TCGA-63-7022-01 9 88880948 88880948 T C ISCA1 3'UTR 0.14 TCGA-63-7022-01 X 100241817 100241817 T C ARL13A Missense_Mutation p.L138P 0.08 deleterious(0) probably_damaging(0.999) TCGA-63-7022-01 X 100541616 100541616 A G TAF7L Missense_Mutation p.L117P 0.11 deleterious(0) probably_damaging(0.914) TCGA-63-7022-01 X 101909528 101909528 C A GPRASP1 Silent p.A229A 0.07 TCGA-63-7022-01 X 107449774 107449774 C A COL4A6 Nonsense_Mutation p.G196* 0.10 TCGA-63-7022-01 X 108718551 108718552 - A GUCY2F Frame_Shift_Ins p.A206Rfs*63 0.08 TCGA-63-7022-01 X 120181653 120181653 G T GLUD2 Missense_Mutation p.A39S 0.20 tolerated_low_confidence(0.55) benign(0.004) TCGA-63-7022-01 X 129146552 129146552 A G BCORL1 Splice_Site p.X29_splice 0.08 TCGA-63-7022-01 X 135956447 135956447 T C RBMX Missense_Mutation p.R344G 0.07 deleterious(0.02) benign(0.272) TCGA-63-7022-01 X 153207470 153207470 A T RENBP Silent p.A234A 0.08 TCGA-63-7022-01 X 153217304 153217304 T C HCFC1 Missense_Mutation p.T1750A 0.10 tolerated_low_confidence(0.11) probably_damaging(0.931) TCGA-63-7022-01 X 153281527 153281527 C A IRAK1 Missense_Mutation p.G420C 0.13 deleterious(0) probably_damaging(0.995) TCGA-63-7022-01 X 153670090 153670090 G T GDI1 Missense_Mutation p.A314S 0.07 tolerated(0.7) benign(0.222) TCGA-63-7022-01 X 15568086 15568086 C A BMX Missense_Mutation p.T640N 0.14 tolerated(0.39) benign(0.02) TCGA-63-7022-01 X 18660085 18660085 G T RS1 3'UTR 0.13 TCGA-63-7022-01 X 27998440 27998440 A G DCAF8L1 Missense_Mutation p.Y338H 0.11 deleterious(0) possibly_damaging(0.636) TCGA-63-7022-01 X 30269596 30269596 C G MAGEB1 Missense_Mutation p.A329G 0.08 deleterious(0.05) unknown(0) TCGA-63-7022-01 X 34961083 34961083 C A FAM47B Silent p.T45T 0.13 TCGA-63-7022-01 X 77913549 77913549 G T ZCCHC5 Silent p.S123S 0.10 TCGA-63-7022-01 X 79960239 79960239 C T BRWD3 Missense_Mutation p.D887N 0.21 deleterious(0.04) benign(0.006) TCGA-63-7023-01 10 16970303 16970303 C A CUBN Splice_Site p.X2042_splice 0.46 TCGA-63-7023-01 10 37438709 37438709 C A ANKRD30A Missense_Mutation p.A470D 0.24 deleterious(0.01) benign(0.066) TCGA-63-7023-01 10 96066371 96066371 G A PLCE1 Missense_Mutation p.R1937H 0.22 deleterious(0) probably_damaging(1) TCGA-63-7023-01 10 99338111 99338111 G A ANKRD2 Missense_Mutation p.A129T 0.30 tolerated(0.19) possibly_damaging(0.492) TCGA-63-7023-01 11 120989169 120989169 C T TECTA Silent p.S315S 0.91 TCGA-63-7023-01 11 1316891 1316891 T C TOLLIP Missense_Mutation p.N56S 0.32 tolerated(1) benign(0.001) TCGA-63-7023-01 11 31484799 31484799 T A IMMP1L Missense_Mutation p.T9S 0.39 tolerated(0.14) benign(0.036) TCGA-63-7023-01 11 47008862 47008862 G A C11orf49 Splice_Site p.X50_splice 0.41 TCGA-63-7023-01 11 5152982 5152982 C T OR52A5 Silent p.V297V 0.41 TCGA-63-7023-01 11 55037936 55037936 G A TRIM48 3'UTR 0.31 TCGA-63-7023-01 11 55563766 55563766 C A OR5D14 Silent p.S245S 0.34 TCGA-63-7023-01 11 55653280 55653280 C G TRIM51 Missense_Mutation p.H126D 0.09 deleterious(0) possibly_damaging(0.737) TCGA-63-7023-01 11 5776290 5776290 A T OR52N4 Missense_Mutation p.H107L 0.51 deleterious(0) possibly_damaging(0.721) TCGA-63-7023-01 11 62415362 62415362 G T INTS5 Missense_Mutation p.D730E 0.43 tolerated(0.43) benign(0.007) TCGA-63-7023-01 11 7064374 7064374 T - NLRP14 Frame_Shift_Del p.W373Gfs*7 0.25 TCGA-63-7023-01 11 77671408 77671408 T C INTS4 Silent p.L229L 0.35 TCGA-63-7023-01 12 1005255 1005255 G C WNK1 Missense_Mutation p.G1868R 0.72 deleterious(0) benign(0.129) TCGA-63-7023-01 12 103696126 103696126 C A C12orf42 Silent p.A281A 0.41 TCGA-63-7023-01 12 124192216 124192216 T C TCTN2 Missense_Mutation p.F684L 0.40 tolerated(0.68) benign(0.003) TCGA-63-7023-01 12 16043556 16043556 G T STRAP Missense_Mutation p.G119V 0.11 deleterious(0) probably_damaging(0.971) TCGA-63-7023-01 12 20859004 20859004 C T SLCO1C1 Silent p.F131F 0.82 TCGA-63-7023-01 12 20868156 20868156 C A SLCO1C1 Missense_Mutation p.Q205K 0.15 tolerated(0.16) possibly_damaging(0.636) TCGA-63-7023-01 12 21531195 21531195 C T IAPP Silent p.C35C 0.11 TCGA-63-7023-01 12 4737283 4737283 G T AKAP3 Missense_Mutation p.P262H 0.14 tolerated(0.11) probably_damaging(0.977) TCGA-63-7023-01 12 49427360 49427360 C A KMT2D Nonsense_Mutation p.G3710* 0.37 TCGA-63-7023-01 12 49431874 49431874 C - KMT2D Frame_Shift_Del p.V3089Wfs*30 0.28 TCGA-63-7023-01 12 52867199 52867199 A G KRT6C Missense_Mutation p.I108T 0.27 tolerated(0.41) unknown(0) TCGA-63-7023-01 12 7942159 7942159 C G NANOG 5'UTR 0.14 TCGA-63-7023-01 12 8074024 8074024 G T SLC2A3 Silent p.T492T 0.59 TCGA-63-7023-01 12 88453753 88453753 G A CEP290 Silent p.S2189S 0.57 TCGA-63-7023-01 12 88453754 88453754 C A CEP290 Missense_Mutation p.S2189I 0.57 probably_damaging(0.977) TCGA-63-7023-01 13 101890264 101890264 T - NALCN Frame_Shift_Del p.T426Qfs*10 0.29 TCGA-63-7023-01 13 19748260 19748260 C A TUBA3C Nonsense_Mutation p.G366* 0.46 TCGA-63-7023-01 13 23906893 23906893 G C SACS Missense_Mutation p.P3708A 0.45 probably_damaging(0.996) TCGA-63-7023-01 13 32977076 32977076 C A N4BP2L1 3'UTR 0.39 TCGA-63-7023-01 13 39264748 39264748 T G FREM2 Missense_Mutation p.H1089Q 0.48 tolerated(0.1) possibly_damaging(0.74) TCGA-63-7023-01 13 94958331 94958331 C A GPC6 Missense_Mutation p.P369H 0.39 deleterious(0.04) possibly_damaging(0.61) TCGA-63-7023-01 13 95673896 95673896 T C ABCC4 Missense_Mutation p.D1304G 0.40 tolerated_low_confidence(1) benign(0) TCGA-63-7023-01 14 106321095 106321095 C T IGHM Silent p.G298G 0.89 TCGA-63-7023-01 14 19377722 19377722 C A OR11H12 Missense_Mutation p.F43L 0.77 deleterious(0.01) benign(0.325) TCGA-63-7023-01 14 20404676 20404676 C A OR4K1 Missense_Mutation p.P284H 0.41 deleterious(0.01) probably_damaging(0.933) TCGA-63-7023-01 14 20404677 20404677 C A OR4K1 Silent p.P284P 0.40 TCGA-63-7023-01 14 20845561 20845561 T C TEP1 Missense_Mutation p.D1989G 0.58 deleterious(0) probably_damaging(0.996) TCGA-63-7023-01 14 80130289 80130289 A T NRXN3 Missense_Mutation p.T832S 0.87 tolerated(0.73) benign(0) TCGA-63-7023-01 15 20496668 20496668 G A CHEK2P2 RNA 0.23 TCGA-63-7023-01 15 25328755 25328755 A G SNORD116-17 RNA 0.39 TCGA-63-7023-01 15 25429468 25429468 A G SNORD115-8 RNA 0.38 TCGA-63-7023-01 15 25463562 25463562 A G SNORD115-27 5'Flank 0.33 TCGA-63-7023-01 15 44914463 44914463 T A SPG11 Missense_Mutation p.Y800F 0.44 deleterious(0.01) possibly_damaging(0.801) TCGA-63-7023-01 15 48063430 48063430 T C SEMA6D Silent p.N890N 0.51 TCGA-63-7023-01 15 49776595 49776595 G C FGF7 Missense_Mutation p.G160A 0.45 deleterious(0.03) probably_damaging(0.997) TCGA-63-7023-01 15 49926769 49926769 A T DTWD1 Missense_Mutation p.I149L 0.42 tolerated(0.45) benign(0.003) TCGA-63-7023-01 15 53992108 53992108 C A WDR72 Missense_Mutation p.G535V 0.39 deleterious(0) benign(0.183) TCGA-63-7023-01 15 70968922 70968922 C T UACA Silent p.K347K 0.30 TCGA-63-7023-01 15 72190996 72190996 G C MYO9A Missense_Mutation p.A1283G 0.37 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-63-7023-01 15 80762609 80762609 A G ARNT2 Missense_Mutation p.Y82C 0.41 deleterious(0) probably_damaging(0.926) TCGA-63-7023-01 15 88678561 88678561 C T NTRK3 Silent p.V325V 0.38 TCGA-63-7023-01 16 18830848 18830848 A T SMG1 Silent p.L3290L 0.27 TCGA-63-7023-01 16 3023005 3023005 A - PKMYT1 Frame_Shift_Del p.F483Lfs*14 0.35 TCGA-63-7023-01 16 34712287 34712287 C T RP11-80F22.9 RNA 0.47 TCGA-63-7023-01 17 10426938 10426938 C T MYH2 Missense_Mutation p.A1783T 0.78 deleterious(0.03) benign(0.172) TCGA-63-7023-01 17 26966944 26966944 C G KIAA0100 Missense_Mutation p.Q330H 0.40 tolerated(0.14) benign(0.092) TCGA-63-7023-01 17 36353606 36353606 T C RP11-1407O15.2 Missense_Mutation p.I419V 0.45 TCGA-63-7023-01 17 4060185 4060185 G T CYB5D2 Missense_Mutation p.G202C 0.64 deleterious(0) probably_damaging(1) TCGA-63-7023-01 17 67183994 67183994 T A ABCA10 Missense_Mutation p.I720L 0.47 tolerated(0.11) benign(0.005) TCGA-63-7023-01 18 14843063 14843063 T C ANKRD30B Missense_Mutation p.L931S 0.23 deleterious(0.02) probably_damaging(0.943) TCGA-63-7023-01 19 1080323 1080323 G A HMHA1 Silent p.G607G 0.61 TCGA-63-7023-01 19 14271507 14271507 T C LPHN1 Silent p.G509G 0.13 TCGA-63-7023-01 19 15853097 15853097 C A OR10H3 Missense_Mutation p.L299M 0.87 tolerated(0.55) probably_damaging(0.984) TCGA-63-7023-01 19 16980468 16980468 C G SIN3B Missense_Mutation p.F700L 0.83 deleterious(0) benign(0.03) TCGA-63-7023-01 19 35804218 35804218 G A MAG Missense_Mutation p.R581K 0.73 tolerated(0.86) benign(0.004) TCGA-63-7023-01 19 6684452 6684452 T C C3 Splice_Site p.X1374_splice 0.26 TCGA-63-7023-01 19 6986400 6986400 T G EMR4P RNA 0.58 TCGA-63-7023-01 19 9066721 9066721 C A MUC16 Nonsense_Mutation p.E6909* 0.45 TCGA-63-7023-01 1 117660819 117660819 C A TRIM45 Silent p.R353R 0.06 TCGA-63-7023-01 1 143744264 143744264 G T RP6-206I17.1 RNA 0.18 TCGA-63-7023-01 1 152282956 152282956 C T FLG Missense_Mutation p.R1469H 0.25 possibly_damaging(0.522) TCGA-63-7023-01 1 157650829 157650829 T C FCRL3 Silent p.Q633Q 0.59 TCGA-63-7023-01 1 157773855 157773855 T A FCRL1 Silent p.P33P 0.36 TCGA-63-7023-01 1 170511696 170511696 C G GORAB Missense_Mutation p.R187G 0.18 deleterious(0) probably_damaging(0.971) TCGA-63-7023-01 1 173883933 173883933 G A SERPINC1 Missense_Mutation p.R56C 0.17 deleterious(0) possibly_damaging(0.906) TCGA-63-7023-01 1 176762786 176762786 T G PAPPA2 Missense_Mutation p.M1704R 0.38 tolerated(0.17) probably_damaging(0.925) TCGA-63-7023-01 1 179520509 179520509 A C NPHS2 Silent p.A317A 0.44 TCGA-63-7023-01 1 203036920 203036920 G C PPFIA4 Missense_Mutation p.D544H 0.48 deleterious(0.01) probably_damaging(0.973) TCGA-63-7023-01 1 207669653 207669653 C A CR1 Missense_Mutation p.P14Q 0.44 deleterious_low_confidence(0) possibly_damaging(0.868) TCGA-63-7023-01 1 21097480 21097480 C A HP1BP3 Missense_Mutation p.R199S 0.71 deleterious(0.04) probably_damaging(0.977) TCGA-63-7023-01 1 222876560 222876560 C A AIDA Splice_Site p.X37_splice 0.38 TCGA-63-7023-01 1 240256651 240256651 C A FMN2 Silent p.I414I 0.42 TCGA-63-7023-01 1 240421280 240421280 A T FMN2 Silent p.A1367A 0.50 TCGA-63-7023-01 1 241669356 241669356 T C FH Missense_Mutation p.N284S 0.47 deleterious(0) probably_damaging(0.999) TCGA-63-7023-01 1 246797834 246797834 G C CNST Missense_Mutation p.G255R 0.24 tolerated(0.06) probably_damaging(0.976) TCGA-63-7023-01 1 247055190 247055190 G A AHCTF1 Silent p.F621F 0.19 TCGA-63-7023-01 1 247055195 247055195 G T AHCTF1 Missense_Mutation p.H620N 0.13 tolerated(1) benign(0.001) TCGA-63-7023-01 1 247978699 247978699 G T OR14A16 Silent p.L111L 0.32 TCGA-63-7023-01 1 248512190 248512190 G T OR14C36 Missense_Mutation p.M38I 0.30 tolerated(0.48) benign(0.005) TCGA-63-7023-01 1 27106204 27106204 T - ARID1A Frame_Shift_Del p.P1940Hfs*16 0.40 TCGA-63-7023-01 1 32138397 32138397 C G COL16A1 Silent p.G968G 0.82 TCGA-63-7023-01 1 35580860 35580860 A T ZMYM1 Nonstop_Mutation p.*1143Yext*5 0.78 TCGA-63-7023-01 20 23028911 23028911 T A THBD Missense_Mutation p.T411S 0.34 tolerated(0.23) benign(0.046) TCGA-63-7023-01 20 43048481 43048481 A T HNF4A Missense_Mutation p.Y286F 0.41 tolerated(0.55) probably_damaging(0.998) TCGA-63-7023-01 20 46279727 46279727 A C NCOA3 Missense_Mutation p.Q1218P 0.18 tolerated(0.42) benign(0.05) TCGA-63-7023-01 20 57767616 57767616 G A ZNF831 Silent p.R514R 0.50 TCGA-63-7023-01 21 41385241 41385241 C A DSCAM Missense_Mutation p.R1920M 0.80 deleterious_low_confidence(0.01) possibly_damaging(0.702) TCGA-63-7023-01 22 21396700 21396700 C G AC002472.13 5'Flank 0.46 TCGA-63-7023-01 22 28306952 28306952 C T PITPNB Missense_Mutation p.S66N 0.40 tolerated(0.07) probably_damaging(0.959) TCGA-63-7023-01 22 51237116 51237116 C A RPL23AP82 RNA 0.22 TCGA-63-7023-01 2 133554215 133554215 C T NCKAP5 Missense_Mutation p.D299N 0.48 tolerated(0.07) benign(0.006) TCGA-63-7023-01 2 152346976 152346976 T C NEB Missense_Mutation p.S8403G 0.64 benign(0.017) TCGA-63-7023-01 2 152346991 152346991 T A NEB Missense_Mutation p.S8398C 0.50 probably_damaging(0.944) TCGA-63-7023-01 2 152426778 152426778 C G NEB Silent p.L5749L 0.38 TCGA-63-7023-01 2 155555754 155555754 C A KCNJ3 Missense_Mutation p.P156H 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-63-7023-01 2 162875765 162875765 A G DPP4 Silent p.Y422Y 0.53 TCGA-63-7023-01 2 166166968 166166969 - T SCN2A Frame_Shift_Ins p.L279Ffs*7 0.33 TCGA-63-7023-01 2 169826704 169826704 C T ABCB11 Missense_Mutation p.E554K 0.48 deleterious(0.01) benign(0.327) TCGA-63-7023-01 2 169842764 169842764 A G ABCB11 Silent p.R313R 0.49 TCGA-63-7023-01 2 179605191 179605191 C T TTN Missense_Mutation p.A4257T 0.21 TCGA-63-7023-01 2 5832923 5832923 G T SOX11 Missense_Mutation p.G24C 0.47 deleterious(0.01) probably_damaging(0.971) TCGA-63-7023-01 2 63281243 63281243 C T OTX1 Silent p.L53L 0.27 TCGA-63-7023-01 2 85628717 85628717 G A CAPG Missense_Mutation p.R96C 0.29 deleterious(0) probably_damaging(0.993) TCGA-63-7023-01 2 90121909 90121909 A G IGKV1D-17 Missense_Mutation p.I43V 0.27 deleterious(0.01) benign(0.308) TCGA-63-7023-01 3 108343296 108343296 C G DZIP3 Missense_Mutation p.H127Q 0.33 tolerated(0.08) benign(0.001) TCGA-63-7023-01 3 108476052 108476052 C A RETNLB 5'UTR 0.21 TCGA-63-7023-01 3 112546462 112546462 T A CD200R1L Missense_Mutation p.N61I 0.26 tolerated(0.12) benign(0.174) TCGA-63-7023-01 3 113955768 113955768 T A ZNF80 Nonsense_Mutation p.K52* 0.18 TCGA-63-7023-01 3 122277179 122277179 A C PARP9 Missense_Mutation p.S51A 0.54 tolerated(0.08) benign(0.026) TCGA-63-7023-01 3 124303703 124303703 C T KALRN Missense_Mutation p.P12L 0.79 tolerated_low_confidence(0.06) benign(0.052) TCGA-63-7023-01 3 142680947 142680947 A G PAQR9 3'UTR 0.26 TCGA-63-7023-01 3 142840652 142840652 C T CHST2 Missense_Mutation p.R332C 0.22 deleterious(0) probably_damaging(0.998) TCGA-63-7023-01 3 164735360 164735360 A T SI Silent p.A1245A 0.16 TCGA-63-7023-01 3 178916578 178916578 T C PIK3CA 5'UTR 0.54 TCGA-63-7023-01 3 191861755 191861755 G T FGF12 3'UTR 0.16 TCGA-63-7023-01 3 88189752 88189752 A T ZNF654 Missense_Mutation p.N431I 0.28 deleterious(0) probably_damaging(0.994) TCGA-63-7023-01 3 99567432 99567432 C A FILIP1L Missense_Mutation p.A1030S 0.34 deleterious(0.02) benign(0.064) TCGA-63-7023-01 4 183267818 183267818 C T TENM3 Silent p.L83L 0.64 TCGA-63-7023-01 4 20487880 20487880 T C SLIT2 Silent p.P199P 0.09 TCGA-63-7023-01 4 39466718 39466718 C A LIAS Missense_Mutation p.A149E 0.10 deleterious(0) benign(0.13) TCGA-63-7023-01 4 96761712 96761712 G T PDHA2 Silent p.T137T 0.69 TCGA-63-7023-01 4 9784566 9784566 T C DRD5 Missense_Mutation p.F305L 0.64 deleterious(0) probably_damaging(1) TCGA-63-7023-01 5 137661552 137661552 G T CDC25C Silent p.G137G 0.64 TCGA-63-7023-01 5 147719363 147719363 T A SPINK9 3'UTR 0.88 TCGA-63-7023-01 5 149900918 149900918 G - NDST1 Frame_Shift_Del p.A35Pfs*144 0.15 TCGA-63-7023-01 5 179153748 179153748 A G CANX Silent p.K571K 0.92 TCGA-63-7023-01 5 35072811 35072811 C A PRLR Missense_Mutation p.V137L 0.26 tolerated(0.78) benign(0) TCGA-63-7023-01 5 82789520 82789520 C A VCAN Missense_Mutation p.L201M 0.79 deleterious(0) probably_damaging(0.996) TCGA-63-7023-01 6 135360900 135360900 G C HBS1L Missense_Mutation p.L81V 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-63-7023-01 6 144263389 144263389 G T PLAGL1 Missense_Mutation p.F188L 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-63-7023-01 6 150239412 150239412 A G RAET1G Missense_Mutation p.L247P 0.52 tolerated_low_confidence(0.2) benign(0) TCGA-63-7023-01 6 151687871 151687871 T C ZBTB2 Silent p.E110E 0.35 TCGA-63-7023-01 6 158490587 158490587 G T SYNJ2 Missense_Mutation p.G608C 0.40 tolerated(0.07) benign(0.152) TCGA-63-7023-01 6 168363186 168363186 G A MLLT4 Missense_Mutation p.R1627K 0.14 tolerated_low_confidence(0.36) unknown(0) TCGA-63-7023-01 6 28254897 28254897 C A PGBD1 Missense_Mutation p.N198K 0.25 tolerated_low_confidence(0.32) benign(0) TCGA-63-7023-01 6 29054419 29054419 T A OR2B3 Missense_Mutation p.S203C 0.33 tolerated(0.34) benign(0.182) TCGA-63-7023-01 6 42656060 42656060 G T UBR2 Nonsense_Mutation p.E1654* 0.07 TCGA-63-7023-01 6 42796745 42796745 T C GLTSCR1L Missense_Mutation p.M225T 0.50 deleterious(0.02) probably_damaging(0.93) TCGA-63-7023-01 6 51484152 51484152 T A PKHD1 Silent p.P3984P 0.46 TCGA-63-7023-01 6 57472382 57472382 C A PRIM2 3'UTR 0.13 TCGA-63-7023-01 6 88854595 88854595 C G CNR1 Missense_Mutation p.E133D 0.17 deleterious(0) probably_damaging(0.997) TCGA-63-7023-01 7 101844721 101844721 G T CUX1 Missense_Mutation p.R726L 0.35 deleterious(0.01) unknown(0) TCGA-63-7023-01 7 102953469 102953469 A G DNAJC2 Silent p.N572N 0.40 TCGA-63-7023-01 7 123593984 123593984 A T SPAM1 Missense_Mutation p.L120F 0.44 deleterious(0.05) possibly_damaging(0.787) TCGA-63-7023-01 7 126173213 126173213 C A GRM8 Missense_Mutation p.K741N 0.43 deleterious(0) probably_damaging(0.957) TCGA-63-7023-01 7 127669905 127669905 G T LRRC4 Missense_Mutation p.D263E 0.43 tolerated(0.13) possibly_damaging(0.721) TCGA-63-7023-01 7 132193323 132193323 G C PLXNA4 Missense_Mutation p.R44G 0.18 tolerated(0.47) benign(0.017) TCGA-63-7023-01 7 138874256 138874256 G C TTC26 3'UTR 0.41 TCGA-63-7023-01 7 150217436 150217436 A T GIMAP7 Missense_Mutation p.K125M 0.23 deleterious(0) probably_damaging(0.987) TCGA-63-7023-01 7 157926518 157926518 C T PTPRN2 Silent p.A469A 0.48 TCGA-63-7023-01 7 64439487 64439487 T A ZNF117 Missense_Mutation p.K154N 0.27 tolerated(0.47) probably_damaging(0.948) TCGA-63-7023-01 7 86556228 86556228 T C KIAA1324L Missense_Mutation p.Q365R 0.44 deleterious(0.05) benign(0.104) TCGA-63-7023-01 7 92963500 92963500 T C CCDC132 Silent p.L683L 0.46 TCGA-63-7023-01 8 103289378 103289378 C T UBR5 Missense_Mutation p.V2111I 0.19 tolerated(0.22) possibly_damaging(0.55) TCGA-63-7023-01 8 103358590 103358590 C A UBR5 Missense_Mutation p.V204F 0.04 deleterious(0.01) probably_damaging(0.968) TCGA-63-7023-01 8 30694340 30694340 G T TEX15 Missense_Mutation p.P2771T 0.08 deleterious(0.01) possibly_damaging(0.656) TCGA-63-7023-01 8 59404192 59404192 C T CYP7A1 Missense_Mutation p.E453K 0.43 deleterious(0) probably_damaging(1) TCGA-63-7023-01 8 68421815 68421815 T C CPA6 Silent p.S157S 0.05 TCGA-63-7023-01 8 70744831 70744831 C A SLCO5A1 Missense_Mutation p.E26D 0.61 tolerated_low_confidence(0.08) benign(0.001) TCGA-63-7023-01 8 77764242 77764242 G A ZFHX4 Silent p.Q1695Q 0.67 TCGA-63-7023-01 8 89130949 89130949 T C MMP16 Missense_Mutation p.Q284R 0.23 tolerated(1) possibly_damaging(0.559) TCGA-63-7023-01 8 94934943 94934943 T C PDP1 Missense_Mutation p.L244P 0.11 deleterious(0) probably_damaging(0.993) TCGA-63-7023-01 9 125391261 125391261 C G OR1B1 Missense_Mutation p.C185S 0.60 deleterious(0) probably_damaging(0.999) TCGA-63-7023-01 9 173360 173360 G A CBWD1 Missense_Mutation p.A83V 0.64 tolerated(0.08) possibly_damaging(0.532) TCGA-63-7023-01 9 5054746 5054746 C T JAK2 Silent p.Y266Y 0.79 TCGA-63-7023-01 9 84208104 84208104 G - TLE1 Frame_Shift_Del p.R473Gfs*18 0.29 TCGA-63-7023-01 9 89771665 89771665 T G C9orf170 Missense_Mutation p.C116G 0.54 tolerated_low_confidence(0.24) benign(0.402) TCGA-63-7023-01 9 91972355 91972355 A T SECISBP2 Missense_Mutation p.I715F 0.42 deleterious(0) probably_damaging(1) TCGA-63-7023-01 9 95738591 95738591 G A FGD3 Missense_Mutation p.G18E 0.35 tolerated_low_confidence(0.22) benign(0.009) TCGA-63-7023-01 X 153135539 153135539 G T L1CAM Silent p.A321A 0.86 TCGA-63-7023-01 X 68382676 68382676 G A PJA1 Nonsense_Mutation p.R136* 0.93 TCGA-63-7023-01 X 73960755 73960755 C A KIAA2022 Missense_Mutation p.G1213C 0.85 deleterious(0.03) possibly_damaging(0.779) TCGA-63-7023-01 X 76225897 76225897 T A MIR325 RNA 0.87 TCGA-63-7023-01 X 82763275 82763275 C T POU3F4 5'UTR 0.87 TCGA-63-7023-01 X 91131783 91131783 C G PCDH11X Missense_Mutation p.Q182E 0.60 tolerated(0.16) possibly_damaging(0.908) TCGA-63-A5M9-01 11 10823029 10823029 A G EIF4G2 Intron 0.61 TCGA-63-A5M9-01 11 12262632 12262632 T A MICAL2 Missense_Mutation p.S754T 0.21 tolerated(0.17) benign(0.184) TCGA-63-A5M9-01 11 124440808 124440808 A T OR8A1 Missense_Mutation p.S282C 0.53 deleterious(0) probably_damaging(0.964) TCGA-63-A5M9-01 11 134110004 134110004 G C VPS26B Missense_Mutation p.G167A 0.60 deleterious(0) probably_damaging(0.979) TCGA-63-A5M9-01 11 2683075 2683075 G T KCNQ1 Intron 0.40 TCGA-63-A5M9-01 11 33563995 33563995 G A KIAA1549L 5'UTR 0.12 TCGA-63-A5M9-01 11 49805525 49805525 C T RP11-707M1.1 RNA 0.12 TCGA-63-A5M9-01 11 55065669 55065669 A G TRIM51HP RNA 0.29 TCGA-63-A5M9-01 11 59604772 59604772 G T GIF Missense_Mutation p.T249N 0.56 deleterious(0) probably_damaging(0.98) TCGA-63-A5M9-01 11 5968936 5968936 G T OR56A3 Missense_Mutation p.M120I 0.58 tolerated(0.06) benign(0.033) TCGA-63-A5M9-01 12 102056230 102056230 G A MYBPC1 Missense_Mutation p.M684I 0.56 deleterious(0) probably_damaging(0.983) TCGA-63-A5M9-01 12 121205313 121205313 T C SPPL3 Missense_Mutation p.D286G 0.75 deleterious(0) probably_damaging(0.967) TCGA-63-A5M9-01 12 1910794 1910794 C A CACNA2D4 Missense_Mutation p.G913V 0.50 deleterious(0) benign(0.318) TCGA-63-A5M9-01 12 69983305 69983305 G A CCT2 Missense_Mutation p.A163T 0.55 deleterious(0) probably_damaging(0.971) TCGA-63-A5M9-01 12 8374885 8374885 G C FAM90A1 Missense_Mutation p.L310V 0.44 tolerated(0.13) possibly_damaging(0.866) TCGA-63-A5M9-01 12 9254085 9254085 T G A2M Silent p.G484G 0.22 TCGA-63-A5M9-01 12 9309875 9309875 T G PZP Missense_Mutation p.H1149P 0.42 tolerated(0.08) possibly_damaging(0.567) TCGA-63-A5M9-01 13 36049605 36049605 G T MAB21L1 Nonsense_Mutation p.S224* 0.56 TCGA-63-A5M9-01 14 103452887 103452887 G A CDC42BPB Silent p.D209D 0.16 TCGA-63-A5M9-01 14 106610768 106610768 T G IGHV3-15 Missense_Mutation p.E2A 0.15 deleterious_low_confidence(0.03) possibly_damaging(0.476) TCGA-63-A5M9-01 14 78146233 78146233 C A ALKBH1 Missense_Mutation p.W179L 0.29 deleterious(0.03) probably_damaging(0.924) TCGA-63-A5M9-01 15 22368703 22368703 T A OR4M2 Missense_Mutation p.I43N 0.02 deleterious(0) possibly_damaging(0.675) TCGA-63-A5M9-01 15 25415755 25415755 C A SNORD115-3 5'Flank 0.40 TCGA-63-A5M9-01 15 34140515 34140515 G A RYR3 Silent p.R4507R 0.15 TCGA-63-A5M9-01 15 84159572 84159572 C A SH3GL3 Intron 0.38 TCGA-63-A5M9-01 15 88799404 88799404 A T NTRK3 Intron 0.36 TCGA-63-A5M9-01 15 89398697 89398697 G A ACAN Missense_Mutation p.E961K 0.14 deleterious(0.01) benign(0.05) TCGA-63-A5M9-01 16 30387188 30387188 C T MYLPF Silent p.S17S 0.19 TCGA-63-A5M9-01 16 51171069 51171069 C T SALL1 Missense_Mutation p.R1310H 0.18 tolerated(0.27) benign(0.052) TCGA-63-A5M9-01 16 67235439 67235439 C T ELMO3 Missense_Mutation p.A324V 0.39 tolerated(0.21) benign(0.012) TCGA-63-A5M9-01 16 72829882 72829882 A C ZFHX3 Silent p.P2233P 0.29 TCGA-63-A5M9-01 16 75646238 75646238 A G ADAT1 Silent p.L316L 0.18 TCGA-63-A5M9-01 16 85814033 85814033 T C EMC8 Missense_Mutation p.H142R 0.44 tolerated(0.35) benign(0.029) TCGA-63-A5M9-01 17 11572981 11572981 C T DNAH9 Silent p.L1075L 0.19 TCGA-63-A5M9-01 17 21731553 21731553 G A UBBP4 Missense_Mutation p.D210N 0.52 deleterious(0.03) benign(0.053) TCGA-63-A5M9-01 17 42552210 42552210 T C GPATCH8 Missense_Mutation p.K36R 0.37 deleterious_low_confidence(0) possibly_damaging(0.755) TCGA-63-A5M9-01 17 61972921 61972921 A T CSH1 Missense_Mutation p.F123Y 0.37 deleterious(0.01) probably_damaging(0.987) TCGA-63-A5M9-01 17 7574018 7574018 G A TP53 Missense_Mutation p.R337C 0.62 tolerated(0.09) benign(0.344) TCGA-63-A5M9-01 17 8397153 8397153 G A MYH10 Silent p.I1369I 0.16 TCGA-63-A5M9-01 18 22806812 22806812 G A ZNF521 Missense_Mutation p.T357M 0.21 deleterious_low_confidence(0.01) probably_damaging(0.964) TCGA-63-A5M9-01 18 22806906 22806906 A G ZNF521 Missense_Mutation p.Y326H 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-63-A5M9-01 18 48333143 48333143 G A MRO Silent p.D73D 0.18 TCGA-63-A5M9-01 18 54346645 54346645 A G WDR7 Missense_Mutation p.Y81C 0.50 tolerated(0.06) possibly_damaging(0.882) TCGA-63-A5M9-01 19 10602757 10602757 T C KEAP1 Missense_Mutation p.H274R 0.72 deleterious(0.01) possibly_damaging(0.773) TCGA-63-A5M9-01 19 11942863 11942863 A T ZNF440 Missense_Mutation p.K291I 0.05 deleterious(0) probably_damaging(0.98) TCGA-63-A5M9-01 19 2138653 2138653 C T AP3D1 Missense_Mutation p.A53T 0.12 tolerated(0.12) benign(0.17) TCGA-63-A5M9-01 19 2877375 2877375 G T ZNF556 Missense_Mutation p.C140F 0.76 tolerated(0.69) benign(0) TCGA-63-A5M9-01 19 38993345 38993345 G A RYR1 Missense_Mutation p.D2605N 0.22 benign(0) TCGA-63-A5M9-01 19 3942235 3942235 G T NMRK2 Silent p.T219T 0.70 TCGA-63-A5M9-01 19 39826633 39826633 G A GMFG 5'UTR 0.29 TCGA-63-A5M9-01 19 39898939 39898939 G A ZFP36 Missense_Mutation p.R200H 0.12 tolerated(0.11) probably_damaging(0.991) TCGA-63-A5M9-01 19 40540362 40540367 GTTTTT - ZNF780B In_Frame_Del p.Q800_K801del 0.09 TCGA-63-A5M9-01 19 41707249 41707249 G T CYP2S1 Silent p.L316L 0.09 TCGA-63-A5M9-01 19 43262270 43262270 G C PSG8 Missense_Mutation p.T198S 0.11 tolerated(0.25) benign(0.014) TCGA-63-A5M9-01 19 46274874 46274874 G A DMPK Missense_Mutation p.R528W 0.54 deleterious(0) probably_damaging(0.932) TCGA-63-A5M9-01 19 48244172 48244172 A T EHD2 Missense_Mutation p.H372L 0.27 tolerated(0.18) benign(0.045) TCGA-63-A5M9-01 19 50304834 50304834 G T AP2A1 Missense_Mutation p.V581L 0.39 tolerated(0.11) benign(0.205) TCGA-63-A5M9-01 19 51480737 51480737 C G KLK7 3'UTR 0.24 TCGA-63-A5M9-01 19 55175474 55175474 C - LILRB4 Frame_Shift_Del p.L113Wfs*4 0.31 TCGA-63-A5M9-01 19 55354350 55354350 C A KIR2DS4 Missense_Mutation p.P224T 0.40 deleterious_low_confidence(0) benign(0.308) TCGA-63-A5M9-01 19 55715222 55715222 A G PTPRH Silent p.L272L 0.44 TCGA-63-A5M9-01 19 57985691 57985691 G C ZNF772 Missense_Mutation p.Q141E 0.24 deleterious(0.04) benign(0.058) TCGA-63-A5M9-01 1 110125139 110125139 C T GNAI3 Missense_Mutation p.T181I 0.62 deleterious(0) probably_damaging(0.985) TCGA-63-A5M9-01 1 114215971 114215971 G T MAGI3 Nonsense_Mutation p.E1025* 0.68 TCGA-63-A5M9-01 1 149901201 149901201 G A MTMR11 Silent p.L650L 0.19 TCGA-63-A5M9-01 1 218504436 218504436 C T RRP15 3'UTR 0.21 TCGA-63-A5M9-01 1 247079688 247079688 C T AHCTF1 Missense_Mutation p.G53E 0.24 deleterious(0) probably_damaging(0.951) TCGA-63-A5M9-01 1 26610960 26610960 C T UBXN11 Missense_Mutation p.R289H 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-63-A5M9-01 1 55223667 55223667 T C PARS2 Missense_Mutation p.I390V 0.62 tolerated(1) benign(0) TCGA-63-A5M9-01 20 17716460 17716460 C A BANF2 3'UTR 0.33 TCGA-63-A5M9-01 20 34205755 34205755 T C SPAG4 Silent p.F177F 0.35 TCGA-63-A5M9-01 20 36500461 36500461 C A CTNNBL1 3'UTR 0.19 TCGA-63-A5M9-01 20 5935770 5935770 G C MCM8 Missense_Mutation p.S120T 0.41 tolerated(0.1) probably_damaging(0.92) TCGA-63-A5M9-01 20 9364857 9364857 C G PLCB4 Nonsense_Mutation p.S288* 0.49 TCGA-63-A5M9-01 21 10863033 10863033 C A IGHV1OR21-1 Missense_Mutation p.T110K 0.17 deleterious(0) possibly_damaging(0.469) TCGA-63-A5M9-01 21 43411999 43411999 C G ZBTB21 Missense_Mutation p.E736Q 0.27 deleterious(0.03) probably_damaging(0.983) TCGA-63-A5M9-01 22 23154511 23154511 C T IGLV3-10 Missense_Mutation p.P27L 0.48 deleterious(0.01) benign(0.072) TCGA-63-A5M9-01 22 30776280 30776280 G A RNF215 Silent p.L285L 0.15 TCGA-63-A5M9-01 22 37154416 37154416 A C IFT27 Missense_Mutation p.L167R 0.29 deleterious(0) probably_damaging(1) TCGA-63-A5M9-01 22 43539067 43539076 GCGGCGGGCG - MCAT Frame_Shift_Del p.A94Cfs*9 0.47 TCGA-63-A5M9-01 2 102480456 102480456 G A MAP4K4 Intron 0.29 TCGA-63-A5M9-01 2 18758106 18758106 C T NT5C1B Silent p.L419L 0.16 TCGA-63-A5M9-01 2 207528016 207528016 A G DYTN Missense_Mutation p.L415S 0.62 tolerated(1) benign(0.001) TCGA-63-A5M9-01 2 44527210 44527210 T C SLC3A1 Missense_Mutation p.V331A 0.69 tolerated(0.06) probably_damaging(0.963) TCGA-63-A5M9-01 2 63053404 63053404 G A EHBP1 Splice_Site p.X165_splice 0.40 TCGA-63-A5M9-01 2 71211788 71211788 C G ANKRD53 Missense_Mutation p.H317Q 0.12 tolerated(0.53) benign(0.039) TCGA-63-A5M9-01 3 100581210 100581210 C T ABI3BP Nonsense_Mutation p.W368* 0.13 TCGA-63-A5M9-01 3 108361316 108361316 G A DZIP3 Missense_Mutation p.D366N 0.30 deleterious_low_confidence(0) possibly_damaging(0.735) TCGA-63-A5M9-01 3 134898809 134898809 G A EPHB1 Missense_Mutation p.E623K 0.06 tolerated(0.62) benign(0.354) TCGA-63-A5M9-01 3 147128148 147128148 G T ZIC1 Silent p.P83P 0.15 TCGA-63-A5M9-01 3 160964220 160964220 G A NMD3 Missense_Mutation p.G372R 0.36 deleterious(0.03) probably_damaging(0.997) TCGA-63-A5M9-01 3 16252717 16252717 G T GALNT15 Missense_Mutation p.R389L 0.51 tolerated(0.06) benign(0.039) TCGA-63-A5M9-01 3 168820002 168820002 C T MECOM Missense_Mutation p.E750K 0.08 tolerated(0.07) probably_damaging(0.917) TCGA-63-A5M9-01 3 175041982 175041982 G A NAALADL2 Missense_Mutation p.A320T 0.13 deleterious(0.04) benign(0.033) TCGA-63-A5M9-01 3 190126157 190126157 G A CLDN16 Missense_Mutation p.R216H 0.09 deleterious(0) probably_damaging(0.999) TCGA-63-A5M9-01 3 98002657 98002657 T A OR5H2 Missense_Mutation p.M309K 0.55 tolerated(0.06) benign(0.006) TCGA-63-A5M9-01 3 99979907 99979907 C A TBC1D23 Silent p.G15G 0.17 TCGA-63-A5M9-01 4 147561898 147561898 C A POU4F2 Missense_Mutation p.R390S 0.28 deleterious(0) benign(0.015) TCGA-63-A5M9-01 4 170913317 170913317 C A MFAP3L Missense_Mutation p.D148Y 0.65 deleterious(0) probably_damaging(0.992) TCGA-63-A5M9-01 4 47427734 47427734 G - GABRB1 Frame_Shift_Del p.N376Mfs*12 0.43 TCGA-63-A5M9-01 4 78663292 78663292 T C CNOT6L Intron 0.64 TCGA-63-A5M9-01 5 134782734 134782734 C A C5orf20 Missense_Mutation p.G22V 0.57 tolerated_low_confidence(0.1) probably_damaging(0.979) TCGA-63-A5M9-01 5 140559571 140559571 G A PCDHB8 Silent p.P652P 0.10 TCGA-63-A5M9-01 5 140683100 140683100 G A SLC25A2 Silent p.A111A 0.11 TCGA-63-A5M9-01 5 140751993 140751993 C A PCDHGB3 Missense_Mutation p.R678S 0.27 tolerated(0.78) benign(0.185) TCGA-63-A5M9-01 5 2749144 2749144 C T IRX2 Silent p.S226S 0.16 TCGA-63-A5M9-01 6 116757221 116757221 G T DSE Missense_Mutation p.E530D 0.73 tolerated(0.1) benign(0.385) TCGA-63-A5M9-01 6 136597367 136597367 C G BCLAF1 Missense_Mutation p.E432D 0.19 tolerated(0.11) benign(0.388) TCGA-63-A5M9-01 6 144744731 144744731 A G UTRN Missense_Mutation p.N94S 0.57 tolerated(0.1) probably_damaging(0.993) TCGA-63-A5M9-01 6 30228327 30228327 T A HCG17 Intron 0.25 TCGA-63-A5M9-01 6 31602683 31602683 C G PRRC2A Missense_Mutation p.P1697A 0.24 unknown(0) TCGA-63-A5M9-01 6 43538730 43538730 C T XPO5 Missense_Mutation p.G101E 0.17 deleterious(0) probably_damaging(0.95) TCGA-63-A5M9-01 6 46675847 46675847 A T PLA2G7 Nonsense_Mutation p.Y307* 0.44 TCGA-63-A5M9-01 6 46984378 46984378 G A GPR110 Silent p.D246D 0.17 TCGA-63-A5M9-01 6 51483903 51483903 C T PKHD1 Silent p.P4067P 0.16 TCGA-63-A5M9-01 6 6347382 6347382 G C SNAPC5P1 RNA 0.33 TCGA-63-A5M9-01 6 69646543 69646543 G A BAI3 Missense_Mutation p.R334K 0.27 deleterious(0.03) benign(0.064) TCGA-63-A5M9-01 6 90660240 90660240 C T BACH2 Missense_Mutation p.A529T 0.05 tolerated(0.47) probably_damaging(0.988) TCGA-63-A5M9-01 7 100244204 100244204 G A ACTL6B Silent p.L361L 0.34 TCGA-63-A5M9-01 7 12728265 12728265 T C ARL4A Missense_Mutation p.V129A 0.53 tolerated(0.09) possibly_damaging(0.571) TCGA-63-A5M9-01 7 137798437 137798437 T A AKR1D1 Missense_Mutation p.I286N 0.22 deleterious(0) probably_damaging(0.987) TCGA-63-A5M9-01 7 151944987 151944987 C A KMT2C Missense_Mutation p.Q844H 0.15 probably_damaging(0.998) TCGA-63-A5M9-01 7 5097054 5097054 T C RBAK-RBAKDN Splice_Site p.X48_splice 0.08 TCGA-63-A5M9-01 7 5232793 5232793 C T WIPI2 Missense_Mutation p.A40V 0.68 tolerated_low_confidence(1) benign(0.001) TCGA-63-A5M9-01 7 99454479 99454479 G T CYP3A43 Missense_Mutation p.Q274H 0.27 deleterious(0.03) benign(0.381) TCGA-63-A5M9-01 8 133142173 133142173 A G KCNQ3 Missense_Mutation p.V652A 0.26 tolerated(0.43) benign(0.032) TCGA-63-A5M9-01 8 133978813 133978813 A G TG Missense_Mutation p.T1853A 0.27 tolerated(0.69) benign(0.003) TCGA-63-A5M9-01 8 144812471 144812471 T A FAM83H Silent p.T94T 0.28 TCGA-63-A5M9-01 9 131756661 131756661 T A NUP188 Missense_Mutation p.F1009L 0.59 deleterious(0.01) probably_damaging(0.986) TCGA-63-A5M9-01 9 21971108 21971108 C T CDKN2A Missense_Mutation p.D84N 0.83 deleterious(0) probably_damaging(1) TCGA-63-A5M9-01 9 96415539 96415539 G T PHF2 Missense_Mutation p.L227F 0.54 tolerated(0.26) unknown(0) TCGA-63-A5M9-01 X 106397344 106397344 C A NUP62CL Missense_Mutation p.L109F 0.48 deleterious(0) probably_damaging(0.999) TCGA-63-A5M9-01 X 128880276 128880276 T A XPNPEP2 Silent p.A121A 0.31 TCGA-63-A5M9-01 X 128926639 128926639 G T SASH3 Missense_Mutation p.V210L 0.31 deleterious(0.02) benign(0.357) TCGA-63-A5M9-01 X 130215870 130215870 C T ARHGAP36 Silent p.L77L 0.34 TCGA-63-A5M9-01 X 134305100 134305100 C T CT55 5'UTR 0.10 TCGA-63-A5M9-01 X 153070332 153070332 C T PDZD4 Silent p.G262G 0.57 TCGA-63-A5M9-01 X 54836335 54836335 C T MAGED2 Missense_Mutation p.R76W 0.36 deleterious(0.02) possibly_damaging(0.517) TCGA-63-A5M9-01 X 75003765 75003765 A C MAGEE2 Missense_Mutation p.S374R 0.52 tolerated(0.79) probably_damaging(0.995) TCGA-63-A5MB-01 10 101578605 101578605 A G ABCC2 Missense_Mutation p.Q777R 0.61 tolerated(0.13) possibly_damaging(0.568) TCGA-63-A5MB-01 10 105037862 105037862 G A INA Silent p.A298A 0.44 TCGA-63-A5MB-01 10 105209648 105209648 C T CALHM2 Silent p.K17K 0.18 TCGA-63-A5MB-01 10 119043360 119043360 C A PDZD8 Missense_Mutation p.D962Y 0.59 deleterious(0) probably_damaging(0.924) TCGA-63-A5MB-01 10 1229220 1229220 C G ADARB2 Missense_Mutation p.Q711H 0.33 tolerated(0.08) probably_damaging(0.999) TCGA-63-A5MB-01 10 124377703 124377703 C A DMBT1 Missense_Mutation p.P1559T 0.52 tolerated(0.13) probably_damaging(0.964) TCGA-63-A5MB-01 10 124697615 124697615 T A C10orf88 Missense_Mutation p.M237L 0.58 tolerated(0.45) benign(0.003) TCGA-63-A5MB-01 10 22015186 22015186 C G MLLT10 Missense_Mutation p.S631C 0.66 deleterious(0.01) possibly_damaging(0.599) TCGA-63-A5MB-01 10 73122071 73122071 G A SLC29A3 Silent p.A378A 0.18 TCGA-63-A5MB-01 10 87379642 87379642 C A GRID1 Missense_Mutation p.R781M 0.44 deleterious(0) probably_damaging(1) TCGA-63-A5MB-01 10 96291153 96291153 C T TBC1D12 Missense_Mutation p.S732L 0.21 deleterious(0) possibly_damaging(0.523) TCGA-63-A5MB-01 11 102076624 102076624 C G YAP1 Missense_Mutation p.A268G 0.27 tolerated(0.14) benign(0.005) TCGA-63-A5MB-01 11 113650692 113650692 G T CLDN25 Nonsense_Mutation p.E59* 0.47 TCGA-63-A5MB-01 11 113813797 113813797 C T HTR3B Missense_Mutation p.P264S 0.55 deleterious(0) probably_damaging(1) TCGA-63-A5MB-01 11 118221328 118221328 C T CD3G Silent p.I123I 0.19 TCGA-63-A5MB-01 11 123753816 123753816 G T TMEM225 3'UTR 0.10 TCGA-63-A5MB-01 11 124252311 124252311 C T OR8B2 Missense_Mutation p.R310K 0.23 tolerated_low_confidence(0.11) benign(0.002) TCGA-63-A5MB-01 11 125618677 125618677 T C PATE1 3'UTR 0.08 TCGA-63-A5MB-01 11 128679099 128679099 G T FLI1 Nonsense_Mutation p.G277* 0.23 TCGA-63-A5MB-01 11 128781607 128781607 G A KCNJ5 Missense_Mutation p.E147K 0.52 deleterious(0) probably_damaging(1) TCGA-63-A5MB-01 11 18955385 18955385 G T MRGPRX1 Nonsense_Mutation p.S316* 0.32 TCGA-63-A5MB-01 11 20629113 20629113 C T SLC6A5 Silent p.A300A 0.44 TCGA-63-A5MB-01 11 36598034 36598034 G T RAG1 3'UTR 0.56 TCGA-63-A5MB-01 11 47788784 47788784 C A FNBP4 Silent p.P19P 0.24 TCGA-63-A5MB-01 11 49192766 49192766 C A FOLH1 Missense_Mutation p.G430V 0.37 deleterious(0) probably_damaging(0.99) TCGA-63-A5MB-01 11 4936791 4936791 G T OR51G2 Missense_Mutation p.P35T 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-63-A5MB-01 11 50003262 50003262 G T OR4C12 Nonsense_Mutation p.S259* 0.20 TCGA-63-A5MB-01 11 51412282 51412282 C A OR4A5 Silent p.V38V 0.53 TCGA-63-A5MB-01 11 5221464 5221464 G T OR51V1 Missense_Mutation p.T156N 0.24 deleterious(0) benign(0.361) TCGA-63-A5MB-01 11 55136211 55136211 C T OR4A15 Silent p.F284F 0.50 TCGA-63-A5MB-01 11 55873189 55873189 C A OR8H2 Missense_Mutation p.T224N 0.19 tolerated(0.06) benign(0.12) TCGA-63-A5MB-01 11 5602436 5602436 C G OR52B6 Missense_Mutation p.S110R 0.07 tolerated(0.89) benign(0.116) TCGA-63-A5MB-01 11 57947383 57947383 C T OR9Q1 Missense_Mutation p.A156V 0.46 deleterious(0.01) probably_damaging(0.938) TCGA-63-A5MB-01 11 64428480 64428480 C G NRXN2 Missense_Mutation p.E644Q 0.60 deleterious(0.01) benign(0.006) TCGA-63-A5MB-01 11 64428481 64428481 T G NRXN2 Silent p.P643P 0.60 TCGA-63-A5MB-01 11 65271110 65271110 G T MALAT1 RNA 0.31 TCGA-63-A5MB-01 11 73834163 73834163 C A C2CD3 Missense_Mutation p.G412V 0.21 tolerated(0.44) benign(0.17) TCGA-63-A5MB-01 11 77920984 77920984 G T USP35 Nonsense_Mutation p.E695* 0.41 TCGA-63-A5MB-01 11 8246198 8246198 G T LMO1 Missense_Mutation p.Q146K 0.29 tolerated(1) benign(0.001) TCGA-63-A5MB-01 11 89403596 89403596 C G FOLH1B RNA 0.33 TCGA-63-A5MB-01 11 89768754 89768754 A T TRIM49C Missense_Mutation p.R125S 0.28 tolerated(0.08) benign(0.07) TCGA-63-A5MB-01 11 93468371 93468371 G A KIAA1731 3'Flank 0.12 TCGA-63-A5MB-01 12 126137138 126137138 C A TMEM132B Missense_Mutation p.S684Y 0.68 deleterious(0) possibly_damaging(0.757) TCGA-63-A5MB-01 12 126137139 126137139 C G TMEM132B Silent p.S684S 0.67 TCGA-63-A5MB-01 12 14941969 14941969 G A WBP11 Missense_Mutation p.P470S 0.39 deleterious_low_confidence(0.03) unknown(0) TCGA-63-A5MB-01 12 20864335 20864335 A G SLCO1C1 Silent p.R140R 0.36 TCGA-63-A5MB-01 12 22211606 22211606 G C CMAS Missense_Mutation p.R222T 0.06 tolerated(0.1) possibly_damaging(0.471) TCGA-63-A5MB-01 12 22354954 22354954 C A ST8SIA1 Missense_Mutation p.W201C 0.12 deleterious(0.01) probably_damaging(1) TCGA-63-A5MB-01 12 26878586 26878586 T C ITPR2 Silent p.L92L 0.63 TCGA-63-A5MB-01 12 2693688 2693688 C A CACNA1C Missense_Mutation p.F748L 0.29 deleterious(0.01) probably_damaging(0.924) TCGA-63-A5MB-01 12 31944836 31944836 C T H3F3C Missense_Mutation p.V89I 0.07 tolerated_low_confidence(1) benign(0.001) TCGA-63-A5MB-01 12 31944864 31944864 G T H3F3C Missense_Mutation p.N79K 0.05 tolerated_low_confidence(1) benign(0) TCGA-63-A5MB-01 12 40713847 40713847 A T LRRK2 Nonsense_Mutation p.R1629* 0.36 TCGA-63-A5MB-01 12 47630066 47630066 G A PCED1B Missense_Mutation p.G407D 0.21 deleterious(0.04) possibly_damaging(0.878) TCGA-63-A5MB-01 12 48373342 48373342 G C COL2A1 Silent p.A895A 0.50 TCGA-63-A5MB-01 12 48490190 48490190 T A SENP1 Silent p.G52G 0.36 TCGA-63-A5MB-01 12 4920711 4920711 C A KCNA6 Missense_Mutation p.P502T 0.35 tolerated_low_confidence(0.41) benign(0.003) TCGA-63-A5MB-01 12 49308255 49308255 T A CCDC65 Missense_Mutation p.N123K 0.08 deleterious(0.03) possibly_damaging(0.691) TCGA-63-A5MB-01 12 49742665 49742665 G A DNAJC22 Missense_Mutation p.G4R 0.14 tolerated(1) benign(0.128) TCGA-63-A5MB-01 12 52452740 52452740 G A NR4A1 3'UTR 0.58 TCGA-63-A5MB-01 12 56755344 56755344 C A APOF Missense_Mutation p.D216Y 0.24 deleterious(0) probably_damaging(0.95) TCGA-63-A5MB-01 12 6968661 6968661 C G USP5 Missense_Mutation p.F362L 0.17 tolerated(0.06) benign(0.14) TCGA-63-A5MB-01 12 7528018 7528018 A G CD163L1 Missense_Mutation p.Y954H 0.08 tolerated(1) benign(0.03) TCGA-63-A5MB-01 12 80749528 80749528 G A OTOGL Missense_Mutation p.S1860N 0.27 tolerated(0.49) benign(0.002) TCGA-63-A5MB-01 12 8290909 8290909 G T CLEC4A 3'UTR 0.34 TCGA-63-A5MB-01 12 8804268 8804269 - T MFAP5 Frame_Shift_Ins p.N79Kfs*9 0.31 TCGA-63-A5MB-01 12 94806209 94806209 C T CCDC41 Missense_Mutation p.G20R 0.19 tolerated(0.13) probably_damaging(0.941) TCGA-63-A5MB-01 12 95604817 95604817 C G FGD6 Silent p.G81G 0.51 TCGA-63-A5MB-01 12 9994931 9994931 G T KLRF1 Missense_Mutation p.Q163H 0.41 deleterious(0.03) benign(0.309) TCGA-63-A5MB-01 13 26788182 26788182 T A RNF6 Missense_Mutation p.N613Y 0.59 deleterious(0) probably_damaging(0.991) TCGA-63-A5MB-01 13 38320465 38320465 G T TRPC4 Missense_Mutation p.P169H 0.67 deleterious(0) probably_damaging(0.998) TCGA-63-A5MB-01 13 49772542 49772542 G T FNDC3A Missense_Mutation p.S940I 0.24 deleterious(0) probably_damaging(0.993) TCGA-63-A5MB-01 13 49795354 49795354 G A MLNR Missense_Mutation p.R294Q 0.69 tolerated(0.12) benign(0.223) TCGA-63-A5MB-01 13 58208883 58208883 A C PCDH17 Missense_Mutation p.K735Q 0.64 deleterious(0.01) probably_damaging(0.999) TCGA-63-A5MB-01 13 77566218 77566218 T G CLN5 Missense_Mutation p.S44R 0.68 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-63-A5MB-01 13 79175607 79175607 C A POU4F1 Silent p.V401V 0.52 TCGA-63-A5MB-01 13 84455552 84455552 A C SLITRK1 Missense_Mutation p.C31G 0.58 deleterious(0) probably_damaging(0.998) TCGA-63-A5MB-01 14 100376627 100376627 G A EML1 Missense_Mutation p.G449S 0.25 deleterious(0) probably_damaging(0.983) TCGA-63-A5MB-01 14 105419851 105419867 GTTGTGTTTGTCATTGA - AHNAK2 Frame_Shift_Del p.S641Kfs*8 0.37 TCGA-63-A5MB-01 14 106204146 106204146 G T IGHG1 Missense_Mutation p.Q385K 0.37 tolerated(0.33) benign(0.01) TCGA-63-A5MB-01 14 19377925 19377925 G T OR11H12 Missense_Mutation p.G111V 0.30 deleterious(0) probably_damaging(0.971) TCGA-63-A5MB-01 14 28734140 28734140 C - BNIP3P1 RNA 0.36 TCGA-63-A5MB-01 14 34269008 34269008 G T NPAS3 Missense_Mutation p.D499Y 0.26 deleterious(0) possibly_damaging(0.829) TCGA-63-A5MB-01 14 36946184 36946184 C T SFTA3 Missense_Mutation p.E85K 0.22 tolerated_low_confidence(0.24) possibly_damaging(0.502) TCGA-63-A5MB-01 14 47389306 47389306 C G MDGA2 Missense_Mutation p.R716T 0.30 deleterious(0.02) benign(0.288) TCGA-63-A5MB-01 14 54417182 54417182 C A BMP4 Missense_Mutation p.W265C 0.62 deleterious(0) probably_damaging(1) TCGA-63-A5MB-01 14 94089157 94089157 C A UNC79 Missense_Mutation p.L1683M 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.857) TCGA-63-A5MB-01 15 22956407 22956407 T C CYFIP1 Intron 0.21 TCGA-63-A5MB-01 15 23890320 23890320 G T MAGEL2 Missense_Mutation p.A254D 0.29 tolerated(0.07) possibly_damaging(0.541) TCGA-63-A5MB-01 15 23932285 23932285 C G NDN Missense_Mutation p.G27A 0.33 tolerated_low_confidence(0.4) benign(0.004) TCGA-63-A5MB-01 15 34648739 34648739 T C NUTM1 Silent p.L816L 0.36 TCGA-63-A5MB-01 15 45427387 45427387 C T DUOX1 Silent p.D131D 0.33 TCGA-63-A5MB-01 15 52505415 52505415 C G MYO5C Missense_Mutation p.E1371Q 0.32 deleterious(0) probably_damaging(0.985) TCGA-63-A5MB-01 15 53907745 53907745 T A WDR72 Missense_Mutation p.R886S 0.29 tolerated(0.47) benign(0.011) TCGA-63-A5MB-01 15 59191772 59191772 C A SLTM Missense_Mutation p.E318D 0.33 deleterious(0.04) unknown(0) TCGA-63-A5MB-01 15 62253920 62253920 G T VPS13C Missense_Mutation p.T1259N 0.39 tolerated(0.61) benign(0.028) TCGA-63-A5MB-01 15 64499794 64499794 C A CSNK1G1 Splice_Site p.X227_splice 0.57 TCGA-63-A5MB-01 15 72639042 72639042 C G HEXA Missense_Mutation p.D386H 0.05 deleterious(0.01) probably_damaging(0.959) TCGA-63-A5MB-01 15 79323834 79323834 C A RASGRF1 Silent p.L390L 0.20 TCGA-63-A5MB-01 15 85478726 85478726 G - SLC28A1 Frame_Shift_Del p.G520Afs*35 0.17 TCGA-63-A5MB-01 15 86124904 86124904 C T AKAP13 Missense_Mutation p.S1202L 0.17 tolerated_low_confidence(0.13) benign(0.006) TCGA-63-A5MB-01 15 91293022 91293022 G T BLM Missense_Mutation p.S175I 0.22 deleterious(0.01) benign(0.235) TCGA-63-A5MB-01 15 99434729 99434729 G C IGF1R Missense_Mutation p.E272D 0.14 deleterious(0.01) possibly_damaging(0.795) TCGA-63-A5MB-01 16 20482945 20482945 T C ACSM2A Silent p.P276P 0.70 TCGA-63-A5MB-01 16 20491921 20491921 C A ACSM2A Missense_Mutation p.N436K 0.76 deleterious(0.01) possibly_damaging(0.85) TCGA-63-A5MB-01 16 21693115 21693115 G - OTOA Frame_Shift_Del p.N80Mfs*31 0.39 TCGA-63-A5MB-01 16 23700890 23700890 G A PLK1 Missense_Mutation p.E501K 0.13 tolerated(0.09) benign(0.021) TCGA-63-A5MB-01 16 24922742 24922751 CAGAAGCCAT - SLC5A11 Frame_Shift_Del p.E640* 0.27 TCGA-63-A5MB-01 16 24953375 24953375 C G ARHGAP17 Missense_Mutation p.G475R 0.59 deleterious(0) possibly_damaging(0.889) TCGA-63-A5MB-01 16 27221663 27221663 C A KDM8 Missense_Mutation p.D111E 0.13 deleterious(0.04) possibly_damaging(0.664) TCGA-63-A5MB-01 16 2812069 2812069 C T SRRM2 Missense_Mutation p.R514C 0.65 unknown(0) TCGA-63-A5MB-01 16 28967549 28967557 AAGAGGATG - NFATC2IP In_Frame_Del p.E247_E249del 0.10 TCGA-63-A5MB-01 16 29908245 29908245 G C SEZ6L2 Missense_Mutation p.P137A 0.62 tolerated(0.23) possibly_damaging(0.811) TCGA-63-A5MB-01 16 29908246 29908246 G T SEZ6L2 Missense_Mutation p.S136R 0.64 tolerated(0.36) benign(0.003) TCGA-63-A5MB-01 16 3639054 3639054 G A SLX4 Nonsense_Mutation p.Q1529* 0.62 TCGA-63-A5MB-01 16 53296959 53296960 - A CHD9 Frame_Shift_Ins p.W1426Mfs*3 0.13 TCGA-63-A5MB-01 16 58568156 58568156 G C CNOT1 Silent p.A1930A 0.31 TCGA-63-A5MB-01 16 67914783 67914783 C G EDC4 Silent p.T807T 0.51 TCGA-63-A5MB-01 16 72923641 72923641 G C ZFHX3 Missense_Mutation p.S1146C 0.43 possibly_damaging(0.747) TCGA-63-A5MB-01 16 85946744 85946744 T A IRF8 Missense_Mutation p.V152E 0.50 tolerated(0.15) possibly_damaging(0.488) TCGA-63-A5MB-01 17 11520768 11520768 G C DNAH9 Silent p.P315P 0.83 TCGA-63-A5MB-01 17 17700148 17700148 G T RAI1 Nonsense_Mutation p.E1296* 0.60 TCGA-63-A5MB-01 17 25975934 25975934 C T LGALS9 Missense_Mutation p.R332C 0.12 deleterious(0.03) probably_damaging(0.976) TCGA-63-A5MB-01 17 27576207 27576207 T A CRYBA1 Missense_Mutation p.S27T 0.20 tolerated(0.48) benign(0.011) TCGA-63-A5MB-01 17 5462513 5462513 A G NLRP1 Silent p.I501I 0.58 TCGA-63-A5MB-01 17 62462593 62462593 G A MILR1 Silent p.P42P 0.14 TCGA-63-A5MB-01 17 64880933 64880933 T A CACNG5 Intron 0.70 TCGA-63-A5MB-01 17 65548387 65548387 G T PITPNC1 Missense_Mutation p.W71L 0.62 deleterious(0) probably_damaging(1) TCGA-63-A5MB-01 17 73258009 73258009 C G MRPS7 Missense_Mutation p.R10G 0.19 tolerated_low_confidence(0.36) benign(0.001) TCGA-63-A5MB-01 17 7577530 7577530 T A TP53 Missense_Mutation p.I251F 0.62 deleterious(0) probably_damaging(0.994) TCGA-63-A5MB-01 17 76565328 76565328 C A DNAH17 Nonsense_Mutation p.E402* 0.50 TCGA-63-A5MB-01 17 8076904 8076904 G C TMEM107 3'Flank 0.26 TCGA-63-A5MB-01 18 12680731 12680731 G A CEP76 Missense_Mutation p.P407S 0.50 tolerated(0.19) benign(0.234) TCGA-63-A5MB-01 18 14542965 14542965 T A POTEC Missense_Mutation p.M61L 0.08 deleterious_low_confidence(0) benign(0.008) TCGA-63-A5MB-01 18 19751516 19751516 C A GATA6 Missense_Mutation p.S137R 0.17 deleterious(0) possibly_damaging(0.72) TCGA-63-A5MB-01 18 21957393 21957393 A C OSBPL1A Silent p.A35A 0.21 TCGA-63-A5MB-01 18 30254584 30254584 A G KLHL14 3'UTR 0.17 TCGA-63-A5MB-01 18 50278739 50278739 T C DCC Missense_Mutation p.V136A 0.47 deleterious(0) possibly_damaging(0.447) TCGA-63-A5MB-01 18 77679326 77679326 C A PQLC1 Missense_Mutation p.V156L 0.59 tolerated(0.37) benign(0.006) TCGA-63-A5MB-01 19 10385575 10385575 G C ICAM1 Missense_Mutation p.E68Q 0.21 deleterious(0.01) benign(0.336) TCGA-63-A5MB-01 19 13010924 13010924 C G SYCE2 Missense_Mutation p.R169T 0.40 tolerated_low_confidence(0.22) benign(0.33) TCGA-63-A5MB-01 19 13249233 13249233 C T NACC1 3'UTR 0.34 TCGA-63-A5MB-01 19 14640448 14640448 T C TECR 5'UTR 0.37 TCGA-63-A5MB-01 19 15636213 15636213 C A CYP4F22 Nonsense_Mutation p.Y22* 0.31 TCGA-63-A5MB-01 19 16665982 16665982 C A SLC35E1 Missense_Mutation p.G328V 0.08 deleterious(0) probably_damaging(1) TCGA-63-A5MB-01 19 17615416 17615416 C T SLC27A1 Missense_Mutation p.L646F 0.33 deleterious(0.04) benign(0.32) TCGA-63-A5MB-01 19 17662739 17662739 G C FAM129C Intron 0.38 TCGA-63-A5MB-01 19 18197598 18197598 G C IL12RB1 Silent p.L12L 0.35 TCGA-63-A5MB-01 19 19627006 19627006 A T NDUFA13 5'UTR 0.50 TCGA-63-A5MB-01 19 20807495 20807495 G T ZNF626 Silent p.P396P 0.13 TCGA-63-A5MB-01 19 2120971 2120971 G A AP3D1 Silent p.S457S 0.24 TCGA-63-A5MB-01 19 22780201 22780201 A T RN7SL860P 5'Flank 0.27 TCGA-63-A5MB-01 19 2431797 2431797 A T LMNB2 Missense_Mutation p.V565D 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-63-A5MB-01 19 37676514 37676514 G C ZNF585B Missense_Mutation p.A642G 0.08 tolerated(0.06) possibly_damaging(0.64) TCGA-63-A5MB-01 19 38782512 38782512 T A SPINT2 Missense_Mutation p.L209M 0.09 deleterious(0.01) possibly_damaging(0.515) TCGA-63-A5MB-01 19 3938680 3938680 C A NMRK2 Silent p.A82A 0.31 TCGA-63-A5MB-01 19 3938681 3938681 C A NMRK2 Missense_Mutation p.H83N 0.27 tolerated(0.14) possibly_damaging(0.739) TCGA-63-A5MB-01 19 40368387 40368387 G T FCGBP Missense_Mutation p.L4321I 0.04 probably_damaging(0.999) TCGA-63-A5MB-01 19 42584408 42584408 C T ZNF574 Silent p.P550P 0.18 TCGA-63-A5MB-01 19 43349410 43349410 G A PSG10P RNA 0.31 TCGA-63-A5MB-01 19 4538033 4538033 C T LRG1 Missense_Mutation p.M321I 0.33 deleterious(0.02) possibly_damaging(0.718) TCGA-63-A5MB-01 19 48342668 48342668 G T CRX Missense_Mutation p.R115L 0.15 deleterious(0) probably_damaging(0.959) TCGA-63-A5MB-01 19 49649244 49649244 T C PPFIA3 Silent p.L930L 0.17 TCGA-63-A5MB-01 19 49967898 49967898 G A ALDH16A1 Missense_Mutation p.E483K 0.33 deleterious(0.01) probably_damaging(0.995) TCGA-63-A5MB-01 19 49994466 49994466 G A RPL13A Intron 0.29 TCGA-63-A5MB-01 19 51466732 51466732 G T KLK6 Silent p.R91R 0.27 TCGA-63-A5MB-01 19 51955699 51955699 T C SIGLEC8 Silent p.R478R 0.37 TCGA-63-A5MB-01 19 53270098 53270098 C G ZNF600 Missense_Mutation p.C304S 0.38 deleterious(0) probably_damaging(0.994) TCGA-63-A5MB-01 19 53303623 53303623 T C ZNF28 Missense_Mutation p.E492G 0.39 deleterious(0.02) possibly_damaging(0.858) TCGA-63-A5MB-01 19 53644360 53644360 C A ZNF347 Missense_Mutation p.C575F 0.25 deleterious(0.01) probably_damaging(1) TCGA-63-A5MB-01 19 53645770 53645770 T A ZNF347 Missense_Mutation p.K105I 0.36 tolerated(0.12) benign(0.057) TCGA-63-A5MB-01 19 53884466 53884466 G C ZNF525 Missense_Mutation p.E212Q 0.20 deleterious(0.03) benign(0.18) TCGA-63-A5MB-01 19 53994695 53994695 A T ZNF813 Missense_Mutation p.R403S 0.07 deleterious(0.03) possibly_damaging(0.803) TCGA-63-A5MB-01 19 54080951 54080951 C A ZNF331 Silent p.G379G 0.34 TCGA-63-A5MB-01 19 54224359 54224359 T G MIR517B RNA 0.35 TCGA-63-A5MB-01 19 54481420 54481420 G C CACNG8 Missense_Mutation p.V102L 0.16 tolerated(0.62) benign(0.059) TCGA-63-A5MB-01 19 55493920 55493920 T A NLRP2 Missense_Mutation p.F285Y 0.38 deleterious(0) probably_damaging(0.92) TCGA-63-A5MB-01 19 56895387 56895387 C T ZNF582 Missense_Mutation p.V467I 0.30 tolerated(0.69) benign(0) TCGA-63-A5MB-01 19 57066640 57066640 C T ZFP28 Missense_Mutation p.A829V 0.21 tolerated(0.11) benign(0.007) TCGA-63-A5MB-01 19 57081658 57081658 C A ZNF470 5'UTR 0.48 TCGA-63-A5MB-01 19 57286127 57286127 G C ZIM2 Missense_Mutation p.R505G 0.27 tolerated(0.08) possibly_damaging(0.891) TCGA-63-A5MB-01 19 57286128 57286128 G C ZIM2 Silent p.G504G 0.27 TCGA-63-A5MB-01 19 57327779 57327779 T A PEG3 Missense_Mutation p.K677N 0.33 deleterious(0.03) benign(0.414) TCGA-63-A5MB-01 19 58018274 58018274 G A ZNF773 Missense_Mutation p.G271R 0.42 deleterious(0.02) probably_damaging(0.999) TCGA-63-A5MB-01 19 58018452 58018452 C G ZNF773 Missense_Mutation p.P330R 0.16 deleterious(0) probably_damaging(1) TCGA-63-A5MB-01 19 6380693 6380693 C A GTF2F1 Missense_Mutation p.V414L 0.37 tolerated(0.19) benign(0.007) TCGA-63-A5MB-01 19 6664834 6664834 A G TNFSF14 3'UTR 0.23 TCGA-63-A5MB-01 19 8841834 8841835 - T OR2Z1 Frame_Shift_Ins p.W149Lfs*32 0.27 TCGA-63-A5MB-01 19 901510 901510 C A R3HDM4 Missense_Mutation p.G88V 0.41 tolerated(0.39) benign(0.142) TCGA-63-A5MB-01 19 9060202 9060202 G - MUC16 Frame_Shift_Del p.Q9082Kfs*38 0.27 TCGA-63-A5MB-01 1 12322010 12322010 T C VPS13D Silent p.Y489Y 0.06 TCGA-63-A5MB-01 1 149879670 149879670 C - SV2A Frame_Shift_Del p.E490Sfs*3 0.31 TCGA-63-A5MB-01 1 150483549 150483549 C A ECM1 Missense_Mutation p.L222I 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-63-A5MB-01 1 153654997 153654997 G T NPR1 Missense_Mutation p.D399Y 0.32 deleterious(0) probably_damaging(1) TCGA-63-A5MB-01 1 154144672 154144672 C A TPM3 Intron 0.18 TCGA-63-A5MB-01 1 159900084 159900084 C A IGSF9 Silent p.L653L 0.07 TCGA-63-A5MB-01 1 160783691 160783691 G C LY9 Missense_Mutation p.Q240H 0.15 tolerated(0.06) probably_damaging(0.957) TCGA-63-A5MB-01 1 162762484 162762484 C T HSD17B7 Missense_Mutation p.A24V 0.13 tolerated(0.15) benign(0.015) TCGA-63-A5MB-01 1 169511322 169511322 A G F5 Silent p.P1002P 0.43 TCGA-63-A5MB-01 1 171511030 171511030 G T PRRC2C Silent p.G1473G 0.25 TCGA-63-A5MB-01 1 176738805 176738805 G T PAPPA2 Silent p.V1462V 0.42 TCGA-63-A5MB-01 1 179033537 179033537 G T FAM20B Missense_Mutation p.D282Y 0.45 deleterious(0) probably_damaging(1) TCGA-63-A5MB-01 1 179460853 179460853 T A AXDND1 Missense_Mutation p.Y758N 0.05 deleterious(0) benign(0.099) TCGA-63-A5MB-01 1 181754540 181754540 C T CACNA1E Nonsense_Mutation p.Q1889* 0.82 TCGA-63-A5MB-01 1 183853039 183853039 G A RGL1 Missense_Mutation p.D279N 0.62 deleterious(0) possibly_damaging(0.745) TCGA-63-A5MB-01 1 201020161 201020161 T A CACNA1S Missense_Mutation p.N1355I 0.68 deleterious(0.01) unknown(0) TCGA-63-A5MB-01 1 205633874 205633874 T A SLC45A3 5'UTR 0.84 TCGA-63-A5MB-01 1 216260093 216260093 G - USH2A Frame_Shift_Del p.P1652Rfs*13 0.28 TCGA-63-A5MB-01 1 218458662 218458662 G C RRP15 Missense_Mutation p.A2P 0.75 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-63-A5MB-01 1 236737515 236737515 C A HEATR1 Missense_Mutation p.S1149I 0.08 deleterious(0) probably_damaging(0.969) TCGA-63-A5MB-01 1 240371131 240371131 G T FMN2 Missense_Mutation p.G1007C 0.24 unknown(0) TCGA-63-A5MB-01 1 248402530 248402530 G T OR2M4 Missense_Mutation p.Q100H 0.71 deleterious(0.01) benign(0.167) TCGA-63-A5MB-01 1 248551356 248551356 G T OR2T6 Missense_Mutation p.W149C 0.68 deleterious(0) probably_damaging(0.998) TCGA-63-A5MB-01 1 26629320 26629320 C T UBXN11 Missense_Mutation p.E19K 0.36 deleterious(0.03) probably_damaging(0.955) TCGA-63-A5MB-01 1 29189476 29189476 T C OPRD1 Missense_Mutation p.V267A 0.83 deleterious(0) probably_damaging(0.97) TCGA-63-A5MB-01 1 40533235 40533235 C T CAP1 Silent p.S218S 0.72 TCGA-63-A5MB-01 1 42045602 42045602 T C HIVEP3 Missense_Mutation p.R1623G 0.59 probably_damaging(0.996) TCGA-63-A5MB-01 1 4772005 4772005 C A AJAP1 Silent p.A25A 0.53 TCGA-63-A5MB-01 1 53556284 53556284 C T SLC1A7 Missense_Mutation p.S409N 0.15 deleterious(0) possibly_damaging(0.84) TCGA-63-A5MB-01 1 92200383 92200383 G A TGFBR3 Missense_Mutation p.S173L 0.35 deleterious(0) probably_damaging(1) TCGA-63-A5MB-01 1 948868 948868 G T ISG15 5'UTR 0.66 TCGA-63-A5MB-01 20 21493012 21493013 - A NKX2-2 Frame_Shift_Ins p.D124Vfs*186 0.33 TCGA-63-A5MB-01 20 23425493 23425493 A G CSTL1 Missense_Mutation p.H139R 0.25 tolerated_low_confidence(0.17) possibly_damaging(0.507) TCGA-63-A5MB-01 20 24565495 24565495 G A SYNDIG1 Missense_Mutation p.D162N 0.32 tolerated(0.07) benign(0.039) TCGA-63-A5MB-01 20 31389202 31389202 C T DNMT3B Silent p.G705G 0.05 TCGA-63-A5MB-01 20 33519203 33519203 C T GSS Silent p.Q349Q 0.20 TCGA-63-A5MB-01 20 3674871 3674871 G C SIGLEC1 Missense_Mutation p.Q1085E 0.46 tolerated(0.4) benign(0.003) TCGA-63-A5MB-01 20 37570718 37570718 T C FAM83D Silent p.S230S 0.39 TCGA-63-A5MB-01 20 43384668 43384669 - G RIMS4 3'UTR 0.30 TCGA-63-A5MB-01 20 43752788 43752788 A C WFDC12 Missense_Mutation p.C66W 0.25 deleterious(0) probably_damaging(0.999) TCGA-63-A5MB-01 20 47261008 47261008 G C PREX1 Silent p.V1180V 0.11 TCGA-63-A5MB-01 20 61939936 61939936 C A COL20A1 Missense_Mutation p.A273E 0.39 tolerated(1) benign(0.028) TCGA-63-A5MB-01 20 62122072 62122072 G A EEF1A2 Silent p.P263P 0.43 TCGA-63-A5MB-01 20 62839464 62839464 G A MYT1 Silent p.E305E 0.18 TCGA-63-A5MB-01 20 7886949 7886949 T A HAO1 Missense_Mutation p.L191F 0.49 tolerated(0.21) benign(0.075) TCGA-63-A5MB-01 21 19775821 19775821 C A TMPRSS15 Missense_Mutation p.C40F 0.25 deleterious(0.02) benign(0.007) TCGA-63-A5MB-01 21 27284088 27284088 C T APP Missense_Mutation p.G625E 0.22 tolerated(0.98) possibly_damaging(0.468) TCGA-63-A5MB-01 21 32253695 32253695 G A KRTAP11-1 Missense_Mutation p.S50F 0.26 deleterious(0) probably_damaging(0.999) TCGA-63-A5MB-01 21 43531644 43531644 C A UMODL1 Missense_Mutation p.P771H 0.61 tolerated(0.26) probably_damaging(0.95) TCGA-63-A5MB-01 21 46326862 46326862 G A ITGB2 Missense_Mutation p.S99F 0.64 tolerated(0.17) benign(0.047) TCGA-63-A5MB-01 22 17073164 17073164 C G CCT8L2 Missense_Mutation p.A93P 0.42 deleterious(0.01) probably_damaging(0.969) TCGA-63-A5MB-01 22 17280817 17280817 G C XKR3 Missense_Mutation p.L145V 0.37 tolerated(0.75) possibly_damaging(0.874) TCGA-63-A5MB-01 22 17589625 17589625 G A IL17RA Missense_Mutation p.E506K 0.18 deleterious(0.02) benign(0.338) TCGA-63-A5MB-01 22 20094138 20094138 C T DGCR8 Missense_Mutation p.S638F 0.27 deleterious(0.01) possibly_damaging(0.759) TCGA-63-A5MB-01 22 37770517 37770517 G A ELFN2 Missense_Mutation p.A353V 0.15 deleterious(0.02) benign(0.009) TCGA-63-A5MB-01 22 38061840 38061840 G A PDXP Missense_Mutation p.E285K 0.24 tolerated(0.05) benign(0.197) TCGA-63-A5MB-01 22 38097385 38097385 C A TRIOBP Missense_Mutation p.P5T 0.23 deleterious_low_confidence(0.02) benign(0.007) TCGA-63-A5MB-01 22 42144176 42144176 C G MEI1 Silent p.L582L 0.42 TCGA-63-A5MB-01 22 42293161 42293161 C A SREBF2 Silent p.A867A 0.41 TCGA-63-A5MB-01 22 46656042 46656042 C T PKDREJ Missense_Mutation p.V1060M 0.12 tolerated(0.09) benign(0.112) TCGA-63-A5MB-01 22 50660921 50660921 G C TUBGCP6 Missense_Mutation p.R791G 0.32 deleterious(0) probably_damaging(0.957) TCGA-63-A5MB-01 2 103068750 103068750 C T IL18RAP 3'UTR 0.43 TCGA-63-A5MB-01 2 109399134 109399134 C T RANBP2 Missense_Mutation p.T3062I 0.17 deleterious(0) probably_damaging(0.993) TCGA-63-A5MB-01 2 109964273 109964273 A T SH3RF3 Silent p.T239T 0.59 TCGA-63-A5MB-01 2 128186330 128186330 C T PROC Silent p.C398C 0.67 TCGA-63-A5MB-01 2 130877913 130877913 C T POTEF Missense_Mutation p.S59N 0.25 deleterious_low_confidence(0) possibly_damaging(0.637) TCGA-63-A5MB-01 2 130877975 130877975 G A POTEF Silent p.S38S 0.24 TCGA-63-A5MB-01 2 130877979 130877979 T C POTEF Missense_Mutation p.E37G 0.26 tolerated_low_confidence(1) benign(0) TCGA-63-A5MB-01 2 141055519 141055519 A G LRP1B Silent p.C4275C 0.40 TCGA-63-A5MB-01 2 153575469 153575469 A G ARL6IP6 Missense_Mutation p.I111V 0.45 tolerated(1) benign(0.002) TCGA-63-A5MB-01 2 155115548 155115548 C A GALNT13 Missense_Mutation p.A291D 0.56 deleterious(0) probably_damaging(0.98) TCGA-63-A5MB-01 2 160027246 160027246 G C TANC1 Missense_Mutation p.L427F 0.23 deleterious(0) probably_damaging(0.999) TCGA-63-A5MB-01 2 160028680 160028680 G C TANC1 Missense_Mutation p.S467T 0.17 tolerated(0.65) benign(0.001) TCGA-63-A5MB-01 2 170502449 170502449 C T CCDC173 Missense_Mutation p.A521T 0.22 tolerated(0.28) benign(0.023) TCGA-63-A5MB-01 2 176945414 176945414 C A EVX2 Silent p.L284L 0.12 TCGA-63-A5MB-01 2 178098953 178098953 C A NFE2L2 Missense_Mutation p.G31V 0.66 deleterious(0) probably_damaging(0.947) TCGA-63-A5MB-01 2 179516868 179516868 C A TTN Missense_Mutation p.V13084L 0.23 TCGA-63-A5MB-01 2 188247926 188247926 A C CALCRL Missense_Mutation p.M53R 0.13 tolerated(0.5) benign(0.214) TCGA-63-A5MB-01 2 204103713 204103713 T A CYP20A1 5'UTR 0.45 TCGA-63-A5MB-01 2 228560606 228560606 C T SLC19A3 Missense_Mutation p.V391I 0.53 tolerated(0.11) benign(0.052) TCGA-63-A5MB-01 2 234526672 234526672 T A UGT1A8 Missense_Mutation p.S107T 0.36 tolerated(0.71) benign(0.043) TCGA-63-A5MB-01 2 234669383 234669383 G T UGT1A8 Intron 0.41 TCGA-63-A5MB-01 2 238280759 238280759 G A COL6A3 Missense_Mutation p.R1301W 0.29 probably_damaging(0.994) TCGA-63-A5MB-01 2 238296390 238296390 C A COL6A3 Missense_Mutation p.A383S 0.37 possibly_damaging(0.719) TCGA-63-A5MB-01 2 242757500 242757500 G T NEU4 Missense_Mutation p.S207I 0.58 deleterious(0.02) possibly_damaging(0.848) TCGA-63-A5MB-01 2 27276439 27276439 G C AGBL5 Missense_Mutation p.E129Q 0.13 tolerated(0.14) possibly_damaging(0.541) TCGA-63-A5MB-01 2 30143176 30143176 G C ALK Missense_Mutation p.P117R 0.36 tolerated_low_confidence(0.16) benign(0.322) TCGA-63-A5MB-01 2 31593273 31593273 C A XDH Missense_Mutation p.G643V 0.60 deleterious(0) probably_damaging(0.977) TCGA-63-A5MB-01 2 33783405 33783405 T A RASGRP3 Splice_Site p.X569_splice 0.58 TCGA-63-A5MB-01 2 48807810 48807810 A T STON1-GTF2A1L Missense_Mutation p.D13V 0.21 deleterious(0) probably_damaging(0.999) TCGA-63-A5MB-01 2 64863200 64863200 G A SERTAD2 Missense_Mutation p.S269L 0.10 deleterious(0.01) probably_damaging(0.952) TCGA-63-A5MB-01 2 65492200 65492200 T C ACTR2 Missense_Mutation p.V307A 0.09 deleterious(0) probably_damaging(0.999) TCGA-63-A5MB-01 3 113311891 113311891 T C SIDT1 Silent p.N347N 0.12 TCGA-63-A5MB-01 3 114026897 114026897 C A TIGIT Missense_Mutation p.D218E 0.09 tolerated(0.11) benign(0.346) TCGA-63-A5MB-01 3 119301051 119301051 C T ADPRH Missense_Mutation p.A12V 0.17 deleterious(0) possibly_damaging(0.623) TCGA-63-A5MB-01 3 119306464 119306464 G A ADPRH Silent p.G271G 0.29 TCGA-63-A5MB-01 3 126224811 126224811 G T UROC1 Missense_Mutation p.Q216K 0.16 deleterious(0) probably_damaging(0.959) TCGA-63-A5MB-01 3 140277501 140277501 T C CLSTN2 Missense_Mutation p.C615R 0.17 deleterious(0) possibly_damaging(0.564) TCGA-63-A5MB-01 3 142103461 142103461 T C XRN1 Silent p.T802T 0.35 TCGA-63-A5MB-01 3 150931261 150931261 G A P2RY14 Silent p.L282L 0.09 TCGA-63-A5MB-01 3 155200719 155200719 C A PLCH1 Silent p.G1040G 0.34 TCGA-63-A5MB-01 3 159976356 159976356 G T IFT80 Nonsense_Mutation p.S764* 0.29 TCGA-63-A5MB-01 3 164906571 164906571 C T SLITRK3 Missense_Mutation p.R683Q 0.09 tolerated(0.11) benign(0.032) TCGA-63-A5MB-01 3 183273378 183273378 C T KLHL6 Missense_Mutation p.G22R 0.10 tolerated_low_confidence(0.51) benign(0.213) TCGA-63-A5MB-01 3 188592375 188592375 G A LPP 3'UTR 0.57 TCGA-63-A5MB-01 3 193363557 193363558 AG T OPA1 Frame_Shift_Del p.E556Dfs*11 0.20 TCGA-63-A5MB-01 3 195516377 195516377 C A MUC4 Missense_Mutation p.A692S 0.17 unknown(0) TCGA-63-A5MB-01 3 196242131 196242131 C G SMCO1 5'UTR 0.14 TCGA-63-A5MB-01 3 38307609 38307609 C A SLC22A13 Missense_Mutation p.F86L 0.11 deleterious(0.01) possibly_damaging(0.839) TCGA-63-A5MB-01 3 39544036 39544036 C A MOBP Intron 0.70 TCGA-63-A5MB-01 3 47158203 47158203 C A SETD2 Missense_Mutation p.C1499F 0.78 deleterious(0) probably_damaging(0.993) TCGA-63-A5MB-01 3 49136817 49136817 C A QARS Missense_Mutation p.R525L 0.54 deleterious(0) probably_damaging(0.971) TCGA-63-A5MB-01 3 89259161 89259161 C A EPHA3 Missense_Mutation p.T102N 0.38 deleterious(0) probably_damaging(0.996) TCGA-63-A5MB-01 3 98600521 98600521 C T DCBLD2 Missense_Mutation p.C99Y 0.12 deleterious(0) probably_damaging(1) TCGA-63-A5MB-01 4 114436251 114436251 C G CAMK2D Missense_Mutation p.E265Q 0.30 tolerated_low_confidence(0.52) benign(0.307) TCGA-63-A5MB-01 4 115997691 115997691 T G NDST4 Missense_Mutation p.N168H 0.25 tolerated(0.11) possibly_damaging(0.828) TCGA-63-A5MB-01 4 126367671 126367671 A T FAT4 Missense_Mutation p.T2473S 0.24 probably_damaging(0.976) TCGA-63-A5MB-01 4 128694685 128694685 G A SLC25A31 Missense_Mutation p.D302N 0.47 tolerated(0.07) probably_damaging(0.993) TCGA-63-A5MB-01 4 13601481 13601481 T C BOD1L1 Missense_Mutation p.E2348G 0.21 benign(0.006) TCGA-63-A5MB-01 4 162380380 162380380 G T FSTL5 Missense_Mutation p.T567K 0.64 tolerated(0.1) benign(0.022) TCGA-63-A5MB-01 4 39408642 39408642 C T KLB Missense_Mutation p.R25C 0.27 tolerated_low_confidence(0.17) benign(0.002) TCGA-63-A5MB-01 4 41984277 41984277 A G DCAF4L1 Silent p.A156A 0.16 TCGA-63-A5MB-01 4 4281244 4281244 T A LYAR Missense_Mutation p.N120I 0.19 deleterious(0) possibly_damaging(0.882) TCGA-63-A5MB-01 4 44450437 44450437 C T KCTD8 Missense_Mutation p.G35E 0.73 tolerated_low_confidence(0.21) probably_damaging(0.972) TCGA-63-A5MB-01 4 46043081 46043081 G T GABRG1 Missense_Mutation p.S441Y 0.17 deleterious(0.02) benign(0.382) TCGA-63-A5MB-01 4 502747 502747 G C PIGG Missense_Mutation p.E297Q 0.30 tolerated(0.23) benign(0.081) TCGA-63-A5MB-01 4 71068479 71068479 G T ODAM Nonsense_Mutation p.G219* 0.63 TCGA-63-A5MB-01 4 71232706 71232706 C A SMR3A Missense_Mutation p.P134T 0.57 deleterious_low_confidence(0) unknown(0) TCGA-63-A5MB-01 4 89574052 89574052 C G HERC3 Missense_Mutation p.H166D 0.52 tolerated(0.94) benign(0.109) TCGA-63-A5MB-01 5 10448440 10448440 C T ROPN1L Missense_Mutation p.T67I 0.37 deleterious(0.01) possibly_damaging(0.548) TCGA-63-A5MB-01 5 1093674 1093674 C G SLC12A7 Missense_Mutation p.E106Q 0.33 tolerated(0.05) benign(0.376) TCGA-63-A5MB-01 5 137894329 137894329 A T HSPA9 Silent p.A476A 0.42 TCGA-63-A5MB-01 5 138860818 138860818 C G TMEM173 Missense_Mutation p.V113L 0.57 tolerated(0.31) benign(0.012) TCGA-63-A5MB-01 5 140572321 140572321 G A PCDHB10 Missense_Mutation p.V66M 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.87) TCGA-63-A5MB-01 5 141304256 141304256 G A KIAA0141 Missense_Mutation p.D48N 0.27 tolerated(0.15) benign(0.013) TCGA-63-A5MB-01 5 141304258 141304258 C A KIAA0141 Missense_Mutation p.D48E 0.30 tolerated(0.06) benign(0.214) TCGA-63-A5MB-01 5 170736781 170736781 C T TLX3 Missense_Mutation p.R138C 0.09 deleterious(0) probably_damaging(0.991) TCGA-63-A5MB-01 5 176827148 176827148 C T PFN3 3'UTR 0.35 TCGA-63-A5MB-01 5 23509647 23509647 G T PRDM9 Missense_Mutation p.W46C 0.65 deleterious_low_confidence(0.03) possibly_damaging(0.611) TCGA-63-A5MB-01 5 32388774 32388774 G A ZFR Missense_Mutation p.R717C 0.65 deleterious(0) unknown(0) TCGA-63-A5MB-01 5 33881275 33881275 T A ADAMTS12 Silent p.L146L 0.32 TCGA-63-A5MB-01 5 35628633 35628633 C G SPEF2 Missense_Mutation p.Q44E 0.12 deleterious(0) probably_damaging(0.991) TCGA-63-A5MB-01 5 35968177 35968177 A G UGT3A1 Silent p.H85H 0.35 TCGA-63-A5MB-01 5 38493728 38493728 G T LIFR Missense_Mutation p.T682N 0.29 deleterious(0.03) benign(0.078) TCGA-63-A5MB-01 5 40936463 40936463 G A C7 Missense_Mutation p.V102I 0.21 deleterious(0.01) probably_damaging(0.986) TCGA-63-A5MB-01 5 43619172 43619172 G A NNT Missense_Mutation p.R213H 0.50 deleterious(0) probably_damaging(0.999) TCGA-63-A5MB-01 5 56177864 56177864 C A MAP3K1 Missense_Mutation p.T946K 0.19 deleterious_low_confidence(0.03) unknown(0) TCGA-63-A5MB-01 5 56177867 56177867 C A MAP3K1 Missense_Mutation p.T947K 0.36 deleterious_low_confidence(0.05) benign(0.014) TCGA-63-A5MB-01 5 59901589 59901589 C G DEPDC1B Missense_Mutation p.M331I 0.59 deleterious(0.03) benign(0.012) TCGA-63-A5MB-01 5 72311468 72311468 G A FCHO2 Missense_Mutation p.E206K 0.68 deleterious(0.03) possibly_damaging(0.553) TCGA-63-A5MB-01 5 7804734 7804734 A G ADCY2 Missense_Mutation p.I938V 0.41 deleterious(0) probably_damaging(0.996) TCGA-63-A5MB-01 5 89992917 89992917 A T GPR98 Silent p.G2703G 0.56 TCGA-63-A5MB-01 5 914647 914647 A T TRIP13 Missense_Mutation p.E363V 0.30 deleterious(0.01) benign(0.005) TCGA-63-A5MB-01 6 100369042 100369042 G A MCHR2 Missense_Mutation p.P266L 0.26 deleterious(0) probably_damaging(1) TCGA-63-A5MB-01 6 102337560 102337560 G A GRIK2 Missense_Mutation p.E524K 0.21 deleterious(0) probably_damaging(0.987) TCGA-63-A5MB-01 6 102337598 102337598 T A GRIK2 Silent p.L536L 0.22 TCGA-63-A5MB-01 6 128134866 128134866 A T THEMIS Missense_Mutation p.I307N 0.61 deleterious(0) probably_damaging(0.991) TCGA-63-A5MB-01 6 133013591 133013591 G T VNN1 Missense_Mutation p.A320D 0.45 tolerated(0.06) possibly_damaging(0.9) TCGA-63-A5MB-01 6 133804178 133804178 T G EYA4 Missense_Mutation p.F372L 0.39 deleterious(0.01) possibly_damaging(0.533) TCGA-63-A5MB-01 6 152757198 152757198 A T SYNE1 Silent p.A1396A 0.07 TCGA-63-A5MB-01 6 160491055 160491055 A G IGF2R Missense_Mutation p.T1470A 0.62 tolerated(0.08) benign(0.232) TCGA-63-A5MB-01 6 160514552 160514552 G A IGF2R Intron 0.30 TCGA-63-A5MB-01 6 160858173 160858173 A T SLC22A3 Silent p.R406R 0.56 TCGA-63-A5MB-01 6 25850721 25850721 T C SLC17A3 Missense_Mutation p.Y320C 0.45 deleterious(0) probably_damaging(0.997) TCGA-63-A5MB-01 6 28366039 28366039 G T ZSCAN12 Nonsense_Mutation p.Y48* 0.67 TCGA-63-A5MB-01 6 30610762 30610762 C A ATAT1 Silent p.G302G 0.71 TCGA-63-A5MB-01 6 31737513 31737513 G A VWA7 Missense_Mutation p.S419F 0.74 deleterious(0) probably_damaging(0.999) TCGA-63-A5MB-01 6 38899752 38899752 A G DNAH8 Missense_Mutation p.I3597V 0.23 benign(0.433) TCGA-63-A5MB-01 6 43172719 43172719 C G CUL9 Missense_Mutation p.R1500G 0.05 deleterious(0.01) probably_damaging(0.973) TCGA-63-A5MB-01 6 43322531 43322531 C A ZNF318 Missense_Mutation p.K847N 0.59 probably_damaging(0.996) TCGA-63-A5MB-01 6 75890696 75890696 C G COL12A1 Missense_Mutation p.G708A 0.25 probably_damaging(1) TCGA-63-A5MB-01 6 83900692 83900692 C A PGM3 Missense_Mutation p.A42S 0.51 tolerated(0.08) benign(0.166) TCGA-63-A5MB-01 6 97063638 97063638 C T FHL5 Missense_Mutation p.T282I 0.49 deleterious_low_confidence(0.01) benign(0.154) TCGA-63-A5MB-01 6 97620972 97620972 T G MMS22L Missense_Mutation p.S936R 0.68 tolerated(0.44) possibly_damaging(0.463) TCGA-63-A5MB-01 7 102738797 102738797 C T ARMC10 Missense_Mutation p.L277F 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-63-A5MB-01 7 110764535 110764535 T A LRRN3 Silent p.A569A 0.38 TCGA-63-A5MB-01 7 114284743 114284743 G C FOXP2 Silent p.S356S 0.12 TCGA-63-A5MB-01 7 116339952 116339952 C T MET Nonsense_Mutation p.Q272* 0.06 TCGA-63-A5MB-01 7 117232179 117232179 T A CFTR Missense_Mutation p.F653Y 0.08 tolerated(0.08) benign(0.021) TCGA-63-A5MB-01 7 119915607 119915607 T A KCND2 Silent p.S307S 0.20 TCGA-63-A5MB-01 7 126173373 126173373 T C GRM8 Missense_Mutation p.K688R 0.32 tolerated(1) benign(0.007) TCGA-63-A5MB-01 7 128483566 128483566 C T FLNC Missense_Mutation p.R916W 0.20 deleterious(0) possibly_damaging(0.766) TCGA-63-A5MB-01 7 133868566 133868566 A G LRGUK Missense_Mutation p.H432R 0.29 tolerated(0.09) probably_damaging(0.958) TCGA-63-A5MB-01 7 137341245 137341245 G C DGKI Silent p.V216V 0.19 TCGA-63-A5MB-01 7 137792224 137792224 C A AKR1D1 Nonsense_Mutation p.Y251* 0.22 TCGA-63-A5MB-01 7 141765161 141765161 G A MGAM Missense_Mutation p.R1504Q 0.27 deleterious(0.01) probably_damaging(1) TCGA-63-A5MB-01 7 142423416 142423416 C T TRBV27 Silent p.T24T 0.36 TCGA-63-A5MB-01 7 142829192 142829192 C A PIP 5'UTR 0.27 TCGA-63-A5MB-01 7 144015392 144015392 T A OR2A1 Missense_Mutation p.Y59N 0.27 deleterious(0) probably_damaging(0.948) TCGA-63-A5MB-01 7 149473163 149473163 G A ZNF467 5'Flank 0.37 TCGA-63-A5MB-01 7 157370773 157370773 G A PTPRN2 Silent p.G852G 0.55 TCGA-63-A5MB-01 7 23164674 23164674 G A KLHL7 Missense_Mutation p.V109M 0.15 deleterious(0.03) benign(0.44) TCGA-63-A5MB-01 7 31683476 31683476 A G CCDC129 Missense_Mutation p.H857R 0.23 deleterious(0.04) benign(0.275) TCGA-63-A5MB-01 7 42188058 42188067 CTTTCATCCT - GLI3 Frame_Shift_Del p.E42Vfs*41 0.28 TCGA-63-A5MB-01 7 45632441 45632441 G T ADCY1 Missense_Mutation p.K241N 0.31 deleterious(0.01) possibly_damaging(0.71) TCGA-63-A5MB-01 7 50467708 50467708 A T IKZF1 Missense_Mutation p.I273F 0.34 tolerated(0.24) benign(0.333) TCGA-63-A5MB-01 7 55565326 55565326 T C VOPP1 Missense_Mutation p.I57M 0.50 deleterious(0) probably_damaging(0.984) TCGA-63-A5MB-01 7 66410077 66410077 G C TMEM248 Missense_Mutation p.G92R 0.40 tolerated(0.84) benign(0.018) TCGA-63-A5MB-01 7 76126707 76126707 G A DTX2 Missense_Mutation p.A355T 0.18 tolerated(0.12) benign(0.008) TCGA-63-A5MB-01 7 76909787 76909787 C T CCDC146 Missense_Mutation p.T579I 0.27 tolerated(0.16) benign(0.146) TCGA-63-A5MB-01 7 83029447 83029447 T C SEMA3E Silent p.K421K 0.12 TCGA-63-A5MB-01 7 86469086 86469086 T A GRM3 Silent p.T752T 0.11 TCGA-63-A5MB-01 7 91844034 91844034 T A KRIT1 Nonsense_Mutation p.K541* 0.35 TCGA-63-A5MB-01 7 91855133 91855133 T A KRIT1 Silent p.T385T 0.51 TCGA-63-A5MB-01 7 95751034 95751034 G A SLC25A13 Nonsense_Mutation p.Q593* 0.45 TCGA-63-A5MB-01 8 124998327 124998327 A T FER1L6 Missense_Mutation p.E477V 0.21 deleterious(0) possibly_damaging(0.821) TCGA-63-A5MB-01 8 139631719 139631719 T C COL22A1 Silent p.P1268P 0.64 TCGA-63-A5MB-01 8 143545827 143545827 C G BAI1 Missense_Mutation p.P90A 0.77 tolerated(0.21) possibly_damaging(0.539) TCGA-63-A5MB-01 8 22885881 22885881 C T TNFRSF10B Nonsense_Mutation p.W237* 0.67 TCGA-63-A5MB-01 8 41585500 41585500 C A ANK1 Missense_Mutation p.A118S 0.48 deleterious(0.03) probably_damaging(0.999) TCGA-63-A5MB-01 8 72754871 72754871 C T MSC 3'UTR 0.08 TCGA-63-A5MB-01 8 90921935 90921935 C G OSGIN2 Missense_Mutation p.P62R 0.26 deleterious(0.01) possibly_damaging(0.88) TCGA-63-A5MB-01 8 92407386 92407386 G T SLC26A7 3'Flank 0.62 TCGA-63-A5MB-01 9 100403895 100403895 G T NCBP1 Missense_Mutation p.A59S 0.37 tolerated(0.18) possibly_damaging(0.732) TCGA-63-A5MB-01 9 119976966 119976966 G T ASTN2 Missense_Mutation p.A229D 0.33 deleterious_low_confidence(0) unknown(0) TCGA-63-A5MB-01 9 120474737 120474737 G T TLR4 Nonsense_Mutation p.G111* 0.27 TCGA-63-A5MB-01 9 120474738 120474738 G T TLR4 Missense_Mutation p.G111V 0.28 deleterious(0) probably_damaging(1) TCGA-63-A5MB-01 9 130493545 130493545 C T TTC16 Missense_Mutation p.S828F 0.24 tolerated(0.09) benign(0.061) TCGA-63-A5MB-01 9 131670093 131670093 C A LRRC8A Nonsense_Mutation p.S217* 0.16 TCGA-63-A5MB-01 9 132687402 132687402 C G FNBP1 Missense_Mutation p.G275A 0.19 deleterious(0) possibly_damaging(0.58) TCGA-63-A5MB-01 9 138515842 138515842 G T GLT6D1 3'UTR 0.55 TCGA-63-A5MB-01 9 138590929 138590929 G C SOHLH1 Missense_Mutation p.R37G 0.67 tolerated(0.13) benign(0) TCGA-63-A5MB-01 9 139752866 139752866 G C MAMDC4 Missense_Mutation p.E897Q 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-63-A5MB-01 9 140811856 140811856 G T CACNA1B Missense_Mutation p.M313I 0.39 deleterious(0.01) benign(0.063) TCGA-63-A5MB-01 9 2054679 2054679 A T SMARCA2 Missense_Mutation p.T377S 0.60 benign(0.292) TCGA-63-A5MB-01 9 33311111 33311111 C A NFX1 Missense_Mutation p.H462N 0.05 deleterious(0) probably_damaging(0.989) TCGA-63-A5MB-01 9 43625020 43625020 G A SPATA31A6 Missense_Mutation p.H1223Y 0.44 tolerated(0.66) benign(0.029) TCGA-63-A5MB-01 9 69117772 69117772 A T PGM5P2 RNA 0.30 TCGA-63-A5MB-01 9 84199086 84199086 C A TLE1 3'UTR 0.24 TCGA-63-A5MB-01 9 96847654 96847667 AGCCCGCTGGAGTG - PTPDC1 Frame_Shift_Del p.R122Gfs*5 0.26 TCGA-63-A5MB-01 X 102978811 102978811 G A GLRA4 Nonsense_Mutation p.Q184* 0.62 TCGA-63-A5MB-01 X 105881004 105881004 C T CXorf57 Missense_Mutation p.P475S 0.61 deleterious(0.01) possibly_damaging(0.892) TCGA-63-A5MB-01 X 129535989 129535989 G A RBMX2 5'UTR 0.75 TCGA-63-A5MB-01 X 21875667 21875667 A C YY2 Silent p.S355S 0.35 TCGA-63-A5MB-01 X 36122635 36122635 T C CHDC2 Missense_Mutation p.V291A 0.74 deleterious(0.01) possibly_damaging(0.81) TCGA-63-A5MB-01 X 49851158 49851158 C A CLCN5 Silent p.G396G 0.74 TCGA-63-A5MB-01 X 5947401 5947401 C A NLGN4X Missense_Mutation p.G182V 0.69 deleterious(0) probably_damaging(0.993) TCGA-63-A5MB-01 X 601766 601766 G T SHOX Missense_Mutation p.A193S 0.58 tolerated(0.13) benign(0.079) TCGA-63-A5MB-01 X 74282217 74282217 G C ABCB7 Silent p.P628P 0.69 TCGA-63-A5MB-01 X 78010974 78010974 A T LPAR4 Missense_Mutation p.K203M 0.82 deleterious(0.02) probably_damaging(0.994) TCGA-63-A5MB-01 X 82764111 82764111 A T POU3F4 Missense_Mutation p.D260V 0.43 deleterious(0.01) probably_damaging(1) TCGA-63-A5MB-01 X 84306441 84306441 A T APOOL Missense_Mutation p.E56V 0.73 deleterious(0) probably_damaging(1) TCGA-63-A5MG-01 10 21901350 21901350 A G MLLT10 Missense_Mutation p.H160R 0.20 deleterious(0) probably_damaging(0.984) TCGA-63-A5MG-01 10 27306626 27306626 C A ANKRD26 Missense_Mutation p.M1437I 0.20 deleterious(0.03) benign(0.442) TCGA-63-A5MG-01 10 45798745 45798745 C A OR13A1 3'UTR 0.21 TCGA-63-A5MG-01 10 45798746 45798746 C A OR13A1 3'UTR 0.21 TCGA-63-A5MG-01 10 53667267 53667267 C A PRKG1 Missense_Mutation p.S233R 0.15 deleterious(0) possibly_damaging(0.549) TCGA-63-A5MG-01 10 73270887 73270887 G T CDH23-AS1 Intron 0.18 TCGA-63-A5MG-01 10 82045322 82045322 C A MAT1A Missense_Mutation p.D39Y 0.15 deleterious(0) probably_damaging(1) TCGA-63-A5MG-01 10 89711873 89711873 A G PTEN Splice_Site p.X165_splice 0.13 TCGA-63-A5MG-01 11 1025869 1025869 G T MUC6 Missense_Mutation p.T912K 0.14 unknown(0) TCGA-63-A5MG-01 11 117774745 117774745 C T TMPRSS13 Missense_Mutation p.V485I 0.11 tolerated(0.11) benign(0.233) TCGA-63-A5MG-01 11 124266378 124266378 A G OR8B3 Silent p.S290S 0.14 TCGA-63-A5MG-01 11 22381027 22381027 A G SLC17A6 Missense_Mutation p.H176R 0.15 deleterious(0.02) possibly_damaging(0.616) TCGA-63-A5MG-01 11 49168486 49168486 T C FOLH1 Missense_Mutation p.Y692C 0.04 deleterious(0) probably_damaging(0.973) TCGA-63-A5MG-01 11 49974221 49974221 T A OR4C13 Missense_Mutation p.S83T 0.15 tolerated_low_confidence(0.22) benign(0.126) TCGA-63-A5MG-01 11 55703448 55703448 A T OR5I1 Nonsense_Mutation p.C143* 0.18 TCGA-63-A5MG-01 11 56185453 56185453 C A OR5R1 Missense_Mutation p.V86F 0.10 tolerated(0.07) possibly_damaging(0.646) TCGA-63-A5MG-01 11 56344776 56344776 C A OR5M10 Missense_Mutation p.C141F 0.18 deleterious(0) probably_damaging(1) TCGA-63-A5MG-01 11 63137794 63137794 G A SLC22A9 Missense_Mutation p.R89H 0.08 tolerated(0.19) benign(0.02) TCGA-63-A5MG-01 11 85436447 85436447 C A SYTL2 Missense_Mutation p.K351N 0.09 deleterious(0.01) possibly_damaging(0.59) TCGA-63-A5MG-01 12 132546657 132546657 G T EP400 Silent p.T2629T 0.31 TCGA-63-A5MG-01 12 20876153 20876153 A G SLCO1C1 Missense_Mutation p.Y384C 0.07 deleterious(0) probably_damaging(0.992) TCGA-63-A5MG-01 12 278228 278228 C A IQSEC3 Nonsense_Mutation p.C1007* 0.08 TCGA-63-A5MG-01 12 56818805 56818805 A G TIMELESS Silent p.C570C 0.18 TCGA-63-A5MG-01 12 62786977 62786977 T C USP15 Silent p.P855P 0.23 TCGA-63-A5MG-01 12 7527194 7527194 C T CD163L1 Missense_Mutation p.A1085T 0.13 deleterious(0) probably_damaging(0.997) TCGA-63-A5MG-01 12 7842597 7842597 G A GDF3 Silent p.I324I 0.16 TCGA-63-A5MG-01 13 32355859 32355859 G T RXFP2 Silent p.S279S 0.12 TCGA-63-A5MG-01 14 24836483 24836483 A G NFATC4 Intron 0.50 TCGA-63-A5MG-01 14 61518640 61518640 G T SLC38A6 Missense_Mutation p.G396C 0.08 deleterious(0) probably_damaging(1) TCGA-63-A5MG-01 14 93728001 93728001 T A BTBD7 Missense_Mutation p.K465I 0.23 deleterious(0.02) possibly_damaging(0.71) TCGA-63-A5MG-01 14 95670418 95670418 T - CLMN Frame_Shift_Del p.K423Rfs*35 0.21 TCGA-63-A5MG-01 15 25322259 25322259 C G SNORD116-12 RNA 0.10 TCGA-63-A5MG-01 15 25463986 25463986 G T SNORD115-28 5'Flank 0.19 TCGA-63-A5MG-01 15 28903835 28903835 C T HERC2P9 RNA 0.38 TCGA-63-A5MG-01 15 34105101 34105101 A G RYR3 Missense_Mutation p.Y3432C 0.28 benign(0.022) TCGA-63-A5MG-01 16 28515273 28515273 G T IL27 Silent p.R44R 0.13 TCGA-63-A5MG-01 16 56480562 56480562 T C NUDT21 Silent p.E119E 0.23 TCGA-63-A5MG-01 16 67262469 67262469 G A TMEM208 Silent p.A78A 0.11 TCGA-63-A5MG-01 16 84164926 84164926 T C HSDL1 Translation_Start_Site p.M1? 0.16 deleterious(0) possibly_damaging(0.573) TCGA-63-A5MG-01 17 37093414 37093414 G A FBXO47 3'UTR 0.17 TCGA-63-A5MG-01 17 79220707 79220707 G A SLC38A10 Silent p.D740D 0.13 TCGA-63-A5MG-01 17 80320209 80320209 T G TEX19 Silent p.P61P 0.19 TCGA-63-A5MG-01 18 56204223 56204223 T C ALPK2 Missense_Mutation p.I1066V 0.12 tolerated(0.16) benign(0.001) TCGA-63-A5MG-01 18 65178911 65178911 C G DSEL Missense_Mutation p.D989H 0.05 tolerated(0.07) probably_damaging(0.957) TCGA-63-A5MG-01 19 10421149 10421149 C A FDX1L 3'UTR 0.06 TCGA-63-A5MG-01 19 17653025 17653025 C T FAM129C Silent p.R448R 0.14 TCGA-63-A5MG-01 19 22155857 22155857 G A ZNF208 Missense_Mutation p.A660V 0.22 deleterious(0) benign(0.006) TCGA-63-A5MG-01 19 22155858 22155858 C A ZNF208 Missense_Mutation p.A660S 0.21 tolerated(0.1) benign(0.001) TCGA-63-A5MG-01 19 22271467 22271467 A G ZNF257 Silent p.Q305Q 0.10 TCGA-63-A5MG-01 19 37129536 37129536 A G ZNF461 3'UTR 0.23 TCGA-63-A5MG-01 19 39034186 39034186 C G RYR1 Missense_Mutation p.D3931E 0.10 benign(0.001) TCGA-63-A5MG-01 19 47570462 47570462 G - ZC3H4 Frame_Shift_Del p.N1022Tfs*122 0.10 TCGA-63-A5MG-01 19 49340743 49340743 G T PLEKHA4 Missense_Mutation p.R715S 0.06 tolerated_low_confidence(0.17) benign(0.001) TCGA-63-A5MG-01 19 50865452 50865452 C T NAPSA Missense_Mutation p.V68I 0.12 tolerated(0.33) benign(0.039) TCGA-63-A5MG-01 19 51961657 51961657 C T SIGLEC8 5'UTR 0.16 TCGA-63-A5MG-01 19 51961658 51961658 G T SIGLEC8 5'UTR 0.17 TCGA-63-A5MG-01 19 55815098 55815098 G T BRSK1 Missense_Mutation p.R397L 0.15 deleterious(0.02) benign(0.25) TCGA-63-A5MG-01 19 56466905 56466905 G A NLRP8 Missense_Mutation p.R494Q 0.15 tolerated(1) benign(0.041) TCGA-63-A5MG-01 19 57641114 57641114 C A USP29 Silent p.V357V 0.13 TCGA-63-A5MG-01 19 58579659 58579659 G A ZNF135 Missense_Mutation p.E627K 0.14 deleterious(0.02) possibly_damaging(0.799) TCGA-63-A5MG-01 19 875314 875314 G C MED16 Missense_Mutation p.H567Q 0.15 tolerated(0.07) possibly_damaging(0.537) TCGA-63-A5MG-01 1 1269665 1269665 C A TAS1R3 Missense_Mutation p.Q794K 0.16 deleterious(0.01) probably_damaging(0.957) TCGA-63-A5MG-01 1 155449193 155449193 C G ASH1L Missense_Mutation p.K1156N 0.16 tolerated_low_confidence(0.1) possibly_damaging(0.888) TCGA-63-A5MG-01 1 176564702 176564702 G C PAPPA2 Missense_Mutation p.K654N 0.16 deleterious(0) possibly_damaging(0.556) TCGA-63-A5MG-01 1 203138101 203138101 C T MYBPH Silent p.G450G 0.07 TCGA-63-A5MG-01 1 215259821 215259821 A G KCNK2 Missense_Mutation p.T53A 0.12 tolerated_low_confidence(0.78) benign(0) TCGA-63-A5MG-01 1 27124373 27124373 C - PIGV 3'UTR 0.14 TCGA-63-A5MG-01 1 37291238 37291238 G C GRIK3 Missense_Mutation p.L574V 0.08 tolerated(0.14) probably_damaging(0.955) TCGA-63-A5MG-01 1 45486345 45486345 A T ZSWIM5 Missense_Mutation p.S855R 0.17 tolerated(0.12) unknown(0) TCGA-63-A5MG-01 1 57161707 57161707 G A PRKAA2 Silent p.T221T 0.04 TCGA-63-A5MG-01 1 75038540 75038540 C A C1orf173 Missense_Mutation p.D952Y 0.07 deleterious(0) probably_damaging(0.961) TCGA-63-A5MG-01 1 79383554 79383554 G A ELTD1 Missense_Mutation p.S548L 0.06 deleterious(0) probably_damaging(1) TCGA-63-A5MG-01 1 90179136 90179136 A G LRRC8C Missense_Mutation p.Y336C 0.12 deleterious(0) probably_damaging(0.997) TCGA-63-A5MG-01 1 94506938 94506938 T A ABCA4 Missense_Mutation p.T1117S 0.06 deleterious(0) possibly_damaging(0.839) TCGA-63-A5MG-01 20 17479686 17479686 C A BFSP1 Splice_Site p.X246_splice 0.10 TCGA-63-A5MG-01 20 29976958 29976958 C G DEFB119 Missense_Mutation p.R46P 0.17 deleterious(0.01) probably_damaging(0.975) TCGA-63-A5MG-01 20 60775863 60775863 G A MTG2 Silent p.P317P 0.13 TCGA-63-A5MG-01 20 62839171 62839171 G T MYT1 Nonsense_Mutation p.E208* 0.18 TCGA-63-A5MG-01 21 16339335 16339335 C A NRIP1 Missense_Mutation p.M393I 0.12 tolerated(0.2) benign(0.016) TCGA-63-A5MG-01 21 17214781 17214781 G T USP25 Missense_Mutation p.L753F 0.09 tolerated(0.25) benign(0.177) TCGA-63-A5MG-01 22 17119520 17119520 C A TPTEP1 RNA 0.13 TCGA-63-A5MG-01 2 137917825 137917825 C A THSD7B Missense_Mutation p.P471Q 0.08 deleterious(0.01) probably_damaging(0.946) TCGA-63-A5MG-01 2 141108413 141108413 T A LRP1B Nonsense_Mutation p.K3949* 0.12 TCGA-63-A5MG-01 2 149226167 149226167 G A MBD5 Missense_Mutation p.G219R 0.16 deleterious(0) probably_damaging(0.979) TCGA-63-A5MG-01 2 155099286 155099286 G T GALNT13 Missense_Mutation p.R185L 0.14 deleterious(0) probably_damaging(0.98) TCGA-63-A5MG-01 2 179495613 179495613 G C TTN Missense_Mutation p.T14691R 0.06 TCGA-63-A5MG-01 2 190922166 190922166 C G MSTN Missense_Mutation p.V316L 0.11 tolerated(0.15) benign(0) TCGA-63-A5MG-01 2 204599560 204599560 C T CD28 Silent p.P196P 0.09 TCGA-63-A5MG-01 2 214794769 214794769 G A SPAG16 Missense_Mutation p.G434R 0.27 deleterious(0.02) probably_damaging(0.973) TCGA-63-A5MG-01 2 220101737 220101737 C G GLB1L 3'UTR 0.17 TCGA-63-A5MG-01 2 25043608 25043608 G A ADCY3 Silent p.V1079V 0.05 TCGA-63-A5MG-01 2 25387656 25387656 G A POMC 5'UTR 0.16 TCGA-63-A5MG-01 2 27360116 27360116 C A C2orf53 Missense_Mutation p.R361M 0.18 deleterious(0) possibly_damaging(0.874) TCGA-63-A5MG-01 2 73268040 73268040 C T SFXN5 Silent p.V64V 0.17 TCGA-63-A5MG-01 2 90139430 90139430 G T IGKV1D-16 Missense_Mutation p.K67N 0.06 deleterious(0.01) benign(0.246) TCGA-63-A5MG-01 2 99681525 99681525 C A TSGA10 Missense_Mutation p.W427C 0.13 deleterious(0) probably_damaging(0.98) TCGA-63-A5MG-01 3 132201098 132201098 T A DNAJC13 Missense_Mutation p.M968K 0.12 tolerated(0.07) benign(0.04) TCGA-63-A5MG-01 3 132201099 132201099 G T DNAJC13 Missense_Mutation p.M968I 0.12 deleterious(0.05) benign(0.005) TCGA-63-A5MG-01 3 132427076 132427076 C A NPHP3 Missense_Mutation p.A382S 0.08 deleterious(0.03) benign(0.146) TCGA-63-A5MG-01 3 133583485 133583485 G C RAB6B Silent p.V24V 0.09 TCGA-63-A5MG-01 3 178917677 178917677 A G PIK3CA Silent p.K184K 0.13 TCGA-63-A5MG-01 3 183824353 183824353 G T HTR3E Missense_Mutation p.A441S 0.26 tolerated(0.13) benign(0.215) TCGA-63-A5MG-01 3 193052851 193052851 C A ATP13A5 Missense_Mutation p.Q327H 0.10 tolerated(0.7) benign(0.002) TCGA-63-A5MG-01 3 48200496 48200496 C T CDC25A Missense_Mutation p.S505N 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-63-A5MG-01 3 87027696 87027696 C G VGLL3 Missense_Mutation p.G128A 0.07 tolerated(0.28) possibly_damaging(0.683) TCGA-63-A5MG-01 4 75250518 75250518 A C EREG Missense_Mutation p.Q168P 0.19 deleterious(0.01) possibly_damaging(0.726) TCGA-63-A5MG-01 5 112312533 112312533 G A DCP2 5'UTR 0.15 TCGA-63-A5MG-01 5 11346666 11346666 G A CTNND2 Silent p.A482A 0.08 TCGA-63-A5MG-01 5 140558435 140558435 G C PCDHB8 Missense_Mutation p.V274L 0.11 tolerated_low_confidence(0.15) benign(0.001) TCGA-63-A5MG-01 5 34914868 34914868 C T RAD1 Missense_Mutation p.A44T 0.12 deleterious(0.05) benign(0.083) TCGA-63-A5MG-01 5 89941882 89941882 G A GPR98 Missense_Mutation p.R999K 0.38 benign(0.027) TCGA-63-A5MG-01 6 127476478 127476478 C T RSPO3 Nonsense_Mutation p.R177* 0.08 TCGA-63-A5MG-01 6 128134897 128134897 G C THEMIS Missense_Mutation p.P297A 0.15 tolerated(0.06) benign(0.01) TCGA-63-A5MG-01 6 138192411 138192411 G A TNFAIP3 Missense_Mutation p.R16Q 0.09 deleterious(0.03) possibly_damaging(0.523) TCGA-63-A5MG-01 6 152557272 152557272 C A SYNE1 Missense_Mutation p.R6789I 0.15 possibly_damaging(0.73) TCGA-63-A5MG-01 6 167705019 167705019 G T UNC93A Silent p.G14G 0.14 TCGA-63-A5MG-01 6 32974589 32974589 A G HLA-DOA 3'UTR 0.05 TCGA-63-A5MG-01 6 43034067 43034067 G A KLC4 Missense_Mutation p.A217T 0.04 tolerated(0.06) benign(0.036) TCGA-63-A5MG-01 7 101845024 101845024 G A CUX1 Missense_Mutation p.R827H 0.14 tolerated(0.06) unknown(0) TCGA-63-A5MG-01 7 127238490 127238490 G T FSCN3 Missense_Mutation p.R321M 0.16 tolerated(0.09) possibly_damaging(0.625) TCGA-63-A5MG-01 7 131865437 131865437 C A PLXNA4 Missense_Mutation p.V1183L 0.16 deleterious(0) probably_damaging(0.997) TCGA-63-A5MG-01 7 136700956 136700956 G T CHRM2 Missense_Mutation p.K448N 0.21 deleterious(0) probably_damaging(0.994) TCGA-63-A5MG-01 7 141464345 141464345 G T TAS2R3 Silent p.V129V 0.23 TCGA-63-A5MG-01 7 21695489 21695489 G T DNAH11 Missense_Mutation p.D1667Y 0.11 probably_damaging(0.945) TCGA-63-A5MG-01 7 44150539 44150539 A T AEBP1 Missense_Mutation p.T505S 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-63-A5MG-01 7 4826055 4826055 T G AP5Z1 Missense_Mutation p.F436C 0.19 deleterious(0) probably_damaging(0.959) TCGA-63-A5MG-01 7 57528688 57528688 G C ZNF716 Missense_Mutation p.R174T 0.10 tolerated(0.09) possibly_damaging(0.647) TCGA-63-A5MG-01 7 86802956 86802956 A T DMTF1 Missense_Mutation p.T145S 0.12 tolerated(0.35) benign(0.017) TCGA-63-A5MG-01 7 88423509 88423509 G T C7orf62 Missense_Mutation p.P250T 0.21 deleterious(0.03) probably_damaging(0.964) TCGA-63-A5MG-01 7 97800871 97800871 C G LMTK2 Missense_Mutation p.L226V 0.12 tolerated(0.06) possibly_damaging(0.789) TCGA-63-A5MG-01 8 108348388 108348388 C A ANGPT1 Nonsense_Mutation p.E189* 0.28 TCGA-63-A5MG-01 8 113392654 113392654 C T CSMD3 Silent p.T2021T 0.20 TCGA-63-A5MG-01 8 94822012 94822012 G T TMEM67 Splice_Site p.X888_splice 0.16 TCGA-63-A5MG-01 8 95186160 95186160 C A CDH17 Missense_Mutation p.M216I 0.25 deleterious(0.01) possibly_damaging(0.685) TCGA-63-A5MG-01 9 107535388 107535388 G A NIPSNAP3B 3'UTR 0.21 TCGA-63-A5MG-01 9 118950014 118950014 G C PAPPA Missense_Mutation p.D333H 0.08 deleterious(0) probably_damaging(0.969) TCGA-63-A5MG-01 9 125424222 125424222 C T OR1L1 Silent p.V76V 0.07 TCGA-63-A5MG-01 X 100880896 100880896 T A ARMCX3 Missense_Mutation p.F309L 0.26 deleterious(0.03) benign(0) TCGA-63-A5MG-01 X 114248418 114248418 G A IL13RA2 Silent p.C145C 0.45 TCGA-63-A5MG-01 X 130409028 130409028 G T IGSF1 Missense_Mutation p.D1144E 0.25 tolerated(0.19) benign(0.018) TCGA-63-A5MG-01 X 15306126 15306126 C T ASB11 Missense_Mutation p.E242K 0.25 deleterious(0.05) possibly_damaging(0.73) TCGA-63-A5MG-01 X 15509376 15509376 C A PIR Missense_Mutation p.G2V 0.16 tolerated(0.62) benign(0.001) TCGA-63-A5MG-01 X 82763335 82763335 G T POU3F4 Translation_Start_Site p.M1? 0.18 deleterious_low_confidence(0.02) benign(0.094) TCGA-63-A5MH-01 10 102795781 102795781 C T SFXN3 Silent p.F122F 0.81 TCGA-63-A5MH-01 10 102796240 102796240 C T SFXN3 Intron 0.82 TCGA-63-A5MH-01 10 104377057 104377057 C T SUFU Silent p.L390L 0.90 TCGA-63-A5MH-01 10 118896127 118896127 C A VAX1 Silent p.L95L 0.76 TCGA-63-A5MH-01 10 124896996 124896996 T C HMX3 Missense_Mutation p.F275L 0.91 deleterious(0) probably_damaging(0.999) TCGA-63-A5MH-01 10 26789785 26789785 T C APBB1IP Silent p.A66A 0.79 TCGA-63-A5MH-01 10 3821676 3821676 G A KLF6 3'UTR 1.00 TCGA-63-A5MH-01 10 67726435 67726435 G T CTNNA3 Missense_Mutation p.L779M 0.78 deleterious(0.02) unknown(0) TCGA-63-A5MH-01 10 70332196 70332196 C A TET1 Missense_Mutation p.A34D 0.12 tolerated(0.1) possibly_damaging(0.475) TCGA-63-A5MH-01 10 89711890 89711890 A C PTEN Missense_Mutation p.S170R 0.86 deleterious(0) probably_damaging(1) TCGA-63-A5MH-01 10 89711891 89711891 G T PTEN Missense_Mutation p.S170I 0.86 deleterious(0) probably_damaging(0.999) TCGA-63-A5MH-01 11 104774208 104774208 C G RP11-693N9.2 RNA 0.85 TCGA-63-A5MH-01 11 117096710 117096710 G A PCSK7 Missense_Mutation p.T266I 0.96 deleterious(0) probably_damaging(1) TCGA-63-A5MH-01 11 118955677 118955677 C T HMBS 5'UTR 0.12 TCGA-63-A5MH-01 11 130289060 130289060 G A ADAMTS8 Missense_Mutation p.S283F 0.62 deleterious(0) probably_damaging(1) TCGA-63-A5MH-01 11 13984570 13984570 C G SPON1 RNA 0.88 TCGA-63-A5MH-01 11 30033484 30033484 G A KCNA4 Missense_Mutation p.P248S 0.82 tolerated(0.09) probably_damaging(0.998) TCGA-63-A5MH-01 11 43283999 43283999 C A HNRNPKP3 RNA 1.00 TCGA-63-A5MH-01 11 45277395 45277395 G C SYT13 Silent p.L77L 0.79 TCGA-63-A5MH-01 11 5080124 5080124 T C OR52E2 Missense_Mutation p.H245R 0.81 deleterious(0.01) possibly_damaging(0.908) TCGA-63-A5MH-01 11 5364701 5364702 CA G OR51B5 Frame_Shift_Del p.L18Sfs*56 0.47 TCGA-63-A5MH-01 11 5653757 5653757 G A TRIM34 Missense_Mutation p.E66K 0.82 tolerated(0.45) benign(0.019) TCGA-63-A5MH-01 11 59225310 59225310 G A OR4D6 Missense_Mutation p.E293K 0.19 deleterious(0.02) probably_damaging(0.99) TCGA-63-A5MH-01 11 63072308 63072308 A G SLC22A10 Silent p.L515L 0.83 TCGA-63-A5MH-01 12 104142836 104142836 T A STAB2 Missense_Mutation p.Y2114N 0.89 deleterious(0) probably_damaging(0.991) TCGA-63-A5MH-01 12 104142837 104142837 A T STAB2 Missense_Mutation p.Y2114F 0.89 deleterious(0.02) probably_damaging(0.989) TCGA-63-A5MH-01 12 104476614 104476614 G C HCFC2 Missense_Mutation p.R333T 0.89 deleterious(0) probably_damaging(0.977) TCGA-63-A5MH-01 12 119617367 119617367 G A HSPB8 Missense_Mutation p.E84K 0.91 tolerated(0.84) benign(0.021) TCGA-63-A5MH-01 12 120580397 120580397 T G GCN1L1 Missense_Mutation p.T1915P 0.85 probably_damaging(0.998) TCGA-63-A5MH-01 12 120580404 120580404 G C GCN1L1 Silent p.V1912V 0.84 TCGA-63-A5MH-01 12 123067430 123067430 G A KNTC1 Missense_Mutation p.R1054K 0.30 tolerated(0.05) benign(0.064) TCGA-63-A5MH-01 12 123187525 123187525 C T HCAR2 Silent p.L102L 0.86 TCGA-63-A5MH-01 12 19406895 19406895 C T PLEKHA5 Silent p.T83T 0.94 TCGA-63-A5MH-01 12 6128681 6128681 C A VWF Silent p.V1301V 0.48 TCGA-63-A5MH-01 12 62147464 62147464 T A FAM19A2 Missense_Mutation p.K108I 0.89 deleterious(0) probably_damaging(0.976) TCGA-63-A5MH-01 12 76752547 76752547 C T OSBPL8 Silent p.K791K 0.91 TCGA-63-A5MH-01 12 81762521 81762521 C - PPFIA2 Frame_Shift_Del p.A489Lfs*3 0.46 TCGA-63-A5MH-01 13 75900398 75900398 C T TBC1D4 Silent p.L656L 0.41 TCGA-63-A5MH-01 13 98829324 98829324 A T RNF113B Missense_Mutation p.V56E 0.43 tolerated(0.07) probably_damaging(0.999) TCGA-63-A5MH-01 14 105622273 105622273 G C JAG2 Missense_Mutation p.R177G 0.83 tolerated(0.12) probably_damaging(0.994) TCGA-63-A5MH-01 14 20784506 20784506 T A CCNB1IP1 Silent p.L59L 0.79 TCGA-63-A5MH-01 14 32561870 32561870 T C ARHGAP5 Silent p.I665I 0.85 TCGA-63-A5MH-01 14 44975827 44975827 G T FSCB Missense_Mutation p.P122T 0.06 tolerated(0.32) possibly_damaging(0.61) TCGA-63-A5MH-01 14 64421539 64421539 G C SYNE2 Missense_Mutation p.K231N 0.82 benign(0.006) TCGA-63-A5MH-01 14 72943539 72943539 C A RGS6 Silent p.I261I 0.84 TCGA-63-A5MH-01 14 77843959 77843959 G - SAMD15 Frame_Shift_Del p.E68Sfs*10 0.44 TCGA-63-A5MH-01 14 96730090 96730090 C T BDKRB1 Missense_Mutation p.T24M 0.89 deleterious(0) probably_damaging(0.977) TCGA-63-A5MH-01 15 23316021 23316021 C T HERC2P2 RNA 0.85 TCGA-63-A5MH-01 15 41046861 41046861 G A RMDN3 Missense_Mutation p.H41Y 0.77 tolerated(1) benign(0.315) TCGA-63-A5MH-01 15 65257723 65257723 G A SPG21 Silent p.L250L 0.93 TCGA-63-A5MH-01 15 68583346 68583346 G A FEM1B Silent p.L550L 0.41 TCGA-63-A5MH-01 15 72533858 72533858 G C PARP6 Missense_Mutation p.Q611E 0.87 deleterious(0.04) probably_damaging(0.977) TCGA-63-A5MH-01 16 28550162 28550162 T A NUPR1 Missense_Mutation p.S23C 0.79 tolerated(0.18) possibly_damaging(0.843) TCGA-63-A5MH-01 16 3789627 3789627 C T CREBBP Missense_Mutation p.G1411E 0.89 unknown(0) TCGA-63-A5MH-01 16 55855362 55855362 T C CES1 Missense_Mutation p.D204G 0.80 deleterious(0.04) benign(0.08) TCGA-63-A5MH-01 16 57290794 57290794 C G PLLP 3'UTR 0.98 TCGA-63-A5MH-01 16 61687733 61687733 C A CDH8 Missense_Mutation p.V727L 0.86 tolerated(0.29) probably_damaging(0.989) TCGA-63-A5MH-01 16 61689491 61689491 A G CDH8 Missense_Mutation p.C597R 0.82 deleterious(0) probably_damaging(0.912) TCGA-63-A5MH-01 16 68857424 68857424 G A CDH1 Missense_Mutation p.D687N 0.88 tolerated(0.12) benign(0.012) TCGA-63-A5MH-01 16 70589051 70589051 A T SF3B3 Missense_Mutation p.Q551L 0.80 tolerated(0.05) benign(0.232) TCGA-63-A5MH-01 16 71682901 71682901 T A PHLPP2 Missense_Mutation p.E1288D 0.87 deleterious(0) probably_damaging(0.996) TCGA-63-A5MH-01 16 71787761 71787761 T G AP1G1 Missense_Mutation p.D423A 0.86 deleterious(0) probably_damaging(0.989) TCGA-63-A5MH-01 17 20108941 20108941 C A SPECC1 Silent p.R527R 0.89 TCGA-63-A5MH-01 17 28545280 28545280 T C SLC6A4 Missense_Mutation p.Y185C 0.91 deleterious(0.01) probably_damaging(0.995) TCGA-63-A5MH-01 17 32598820 32598820 G C CCL7 Nonstop_Mutation p.*100Sext*16 0.39 TCGA-63-A5MH-01 17 35634899 35634899 C T ACACA Splice_Site p.X204_splice 0.31 TCGA-63-A5MH-01 17 36963196 36963196 C G CWC25 Missense_Mutation p.G242R 0.31 tolerated(0.27) benign(0.217) TCGA-63-A5MH-01 17 4046979 4046979 G T CYB5D2 5'UTR 0.85 TCGA-63-A5MH-01 17 40761286 40761286 G T FAM134C Missense_Mutation p.F19L 0.31 tolerated(0.72) benign(0) TCGA-63-A5MH-01 17 40764120 40764120 G C TUBG1 Missense_Mutation p.D120H 0.46 deleterious(0) probably_damaging(0.952) TCGA-63-A5MH-01 17 40764508 40764508 G C TUBG1 Missense_Mutation p.E155Q 0.38 deleterious(0.01) probably_damaging(0.982) TCGA-63-A5MH-01 17 40765076 40765076 G A TUBG1 Silent p.Q197Q 0.41 TCGA-63-A5MH-01 17 40765688 40765688 G A TUBG1 Silent p.L210L 0.37 TCGA-63-A5MH-01 17 72350369 72350369 C G KIF19 Missense_Mutation p.L793V 0.08 tolerated(0.12) benign(0.012) TCGA-63-A5MH-01 17 74566682 74566682 G A ST6GALNAC2 Silent p.G246G 0.86 TCGA-63-A5MH-01 17 7578413 7578413 C T TP53 Missense_Mutation p.V173M 0.84 deleterious(0.02) probably_damaging(1) TCGA-63-A5MH-01 17 8045966 8045966 C T PER1 Splice_Site p.X1087_splice 0.76 TCGA-63-A5MH-01 18 19353637 19353637 T A MIB1 Missense_Mutation p.V195D 0.78 deleterious(0) probably_damaging(0.961) TCGA-63-A5MH-01 18 56939823 56939823 C T RAX Missense_Mutation p.E105K 0.78 tolerated(0.23) benign(0.256) TCGA-63-A5MH-01 18 70209167 70209167 C A CBLN2 Missense_Mutation p.A77S 0.62 tolerated(0.34) benign(0.018) TCGA-63-A5MH-01 19 10502219 10502219 G A CDC37 3'UTR 0.40 TCGA-63-A5MH-01 19 13409701 13409701 A T CACNA1A Missense_Mutation p.W916R 0.42 probably_damaging(0.934) TCGA-63-A5MH-01 19 17664341 17664341 T C FAM129C Missense_Mutation p.V688A 0.04 tolerated_low_confidence(0.57) benign(0.003) TCGA-63-A5MH-01 19 19308355 19308355 C T RFXANK Silent p.D121D 0.30 TCGA-63-A5MH-01 19 22155722 22155722 G C ZNF208 Missense_Mutation p.S705C 0.24 tolerated(0.18) benign(0.024) TCGA-63-A5MH-01 19 22941380 22941380 T G ZNF99 Missense_Mutation p.K444T 0.11 deleterious(0.02) benign(0.169) TCGA-63-A5MH-01 19 23159834 23159834 C G ZNF728 Missense_Mutation p.R102T 0.64 tolerated(0.13) benign(0.436) TCGA-63-A5MH-01 19 36205932 36205932 C T ZBTB32 Missense_Mutation p.S135L 0.49 tolerated(0.19) benign(0.307) TCGA-63-A5MH-01 19 36336399 36336399 C T NPHS1 Missense_Mutation p.G601S 0.43 deleterious(0.03) probably_damaging(0.999) TCGA-63-A5MH-01 19 41596096 41596096 C G CYP2A13 Missense_Mutation p.T163R 0.47 deleterious(0.01) probably_damaging(0.915) TCGA-63-A5MH-01 19 42381211 42381211 A C CD79A 5'UTR 0.33 TCGA-63-A5MH-01 19 4433380 4433380 G A CHAF1A Nonsense_Mutation p.W839* 0.39 TCGA-63-A5MH-01 19 45803103 45803103 G A MARK4 Missense_Mutation p.E638K 0.41 tolerated(0.31) benign(0.002) TCGA-63-A5MH-01 19 46509885 46509885 G - CCDC61 Frame_Shift_Del p.G102Afs*19 0.25 TCGA-63-A5MH-01 19 48542501 48542501 C T CABP5 Missense_Mutation p.M104I 0.35 deleterious(0) benign(0.09) TCGA-63-A5MH-01 19 49244634 49244634 C T IZUMO1 Missense_Mutation p.E286K 0.49 tolerated(0.11) benign(0.285) TCGA-63-A5MH-01 19 50393541 50393541 A G IL4I1 Missense_Mutation p.W386R 0.44 deleterious(0) probably_damaging(1) TCGA-63-A5MH-01 19 54876507 54876507 G T LAIR1 5'UTR 0.44 TCGA-63-A5MH-01 19 54974291 54974291 G A LENG9 Missense_Mutation p.S162L 0.38 deleterious(0) probably_damaging(0.944) TCGA-63-A5MH-01 19 55333045 55333045 A C KIR3DL1 Silent p.S227S 0.04 TCGA-63-A5MH-01 19 55489123 55489123 T C NLRP2 Missense_Mutation p.I110T 0.53 tolerated(0.21) benign(0.002) TCGA-63-A5MH-01 19 56321520 56321520 C A NLRP11 Missense_Mutation p.M152I 0.51 tolerated(0.7) benign(0.002) TCGA-63-A5MH-01 19 56416324 56416324 C T NLRP13 Missense_Mutation p.A868T 0.23 tolerated(0.93) benign(0.031) TCGA-63-A5MH-01 19 57641253 57641253 G A USP29 Missense_Mutation p.E404K 0.39 tolerated(0.23) benign(0.029) TCGA-63-A5MH-01 19 57931117 57931117 G T AC003002.6 Missense_Mutation p.C98F 0.37 tolerated(0.08) possibly_damaging(0.706) TCGA-63-A5MH-01 19 58005336 58005336 G C ZNF419 Missense_Mutation p.V472L 0.15 tolerated(0.25) benign(0.001) TCGA-63-A5MH-01 19 58118753 58118753 C T ZNF530 3'UTR 0.44 TCGA-63-A5MH-01 19 6418820 6418820 C A KHSRP Missense_Mutation p.D225Y 0.51 deleterious(0.01) possibly_damaging(0.825) TCGA-63-A5MH-01 19 7267418 7267418 G A INSR Missense_Mutation p.P197L 0.47 tolerated(0.1) benign(0.253) TCGA-63-A5MH-01 19 7528717 7528717 G A ARHGEF18 Silent p.Q695Q 0.60 TCGA-63-A5MH-01 1 103343561 103343561 T C COL11A1 3'UTR 0.38 TCGA-63-A5MH-01 1 103428227 103428227 T A COL11A1 Silent p.A1002A 0.35 TCGA-63-A5MH-01 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.08 deleterious(0.01) benign(0.045) TCGA-63-A5MH-01 1 118506460 118506460 G T SPAG17 Missense_Mutation p.L2212I 0.55 deleterious(0.02) possibly_damaging(0.761) TCGA-63-A5MH-01 1 12170211 12170211 C T TNFRSF8 Missense_Mutation p.T209M 0.05 tolerated(0.47) benign(0.05) TCGA-63-A5MH-01 1 1266765 1266765 C G TAS1R3 Missense_Mutation p.L14V 0.61 tolerated(0.27) benign(0.014) TCGA-63-A5MH-01 1 144952208 144952208 T A PDE4DIP Missense_Mutation p.R171W 0.10 deleterious(0) probably_damaging(0.961) TCGA-63-A5MH-01 1 152083562 152083562 C A TCHH Nonsense_Mutation p.E711* 0.30 TCGA-63-A5MH-01 1 154574803 154574803 C G ADAR Missense_Mutation p.Q105H 0.42 tolerated(0.62) benign(0.002) TCGA-63-A5MH-01 1 157557720 157557720 C A FCRL4 Missense_Mutation p.R166L 0.59 tolerated(0.46) benign(0.044) TCGA-63-A5MH-01 1 159779320 159779320 G A FCRL6 Missense_Mutation p.E245K 0.48 tolerated(0.3) benign(0.018) TCGA-63-A5MH-01 1 175054573 175054573 G T TNN Missense_Mutation p.V423L 0.53 tolerated(0.07) possibly_damaging(0.901) TCGA-63-A5MH-01 1 17563824 17563824 G A PADI1 Silent p.Q443Q 0.59 TCGA-63-A5MH-01 1 196758889 196758889 G T CFHR3 Intron 0.38 TCGA-63-A5MH-01 1 205290728 205290728 G A NUAK2 Missense_Mutation p.S10F 0.57 deleterious_low_confidence(0.02) benign(0.034) TCGA-63-A5MH-01 1 207787793 207787793 G C CR1 Missense_Mutation p.G2207A 0.46 deleterious(0.01) possibly_damaging(0.611) TCGA-63-A5MH-01 1 215990376 215990376 G C USH2A Missense_Mutation p.S3178C 0.40 benign(0.246) TCGA-63-A5MH-01 1 224492804 224492804 C A NVL Missense_Mutation p.G227V 0.47 tolerated(0.14) benign(0.04) TCGA-63-A5MH-01 1 235969592 235969592 G C LYST Missense_Mutation p.S948R 0.45 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-63-A5MH-01 1 240966244 240966244 C A RGS7 Missense_Mutation p.R440I 0.43 deleterious(0) probably_damaging(0.986) TCGA-63-A5MH-01 1 241946637 241946637 G C WDR64 Missense_Mutation p.E877Q 0.33 deleterious(0.01) probably_damaging(0.93) TCGA-63-A5MH-01 1 24202017 24202017 G C CNR2 Missense_Mutation p.P31A 0.28 tolerated(0.81) benign(0.001) TCGA-63-A5MH-01 1 246498698 246498698 G A SMYD3 Nonsense_Mutation p.R103* 0.36 TCGA-63-A5MH-01 1 25780765 25780765 T C TMEM57 Missense_Mutation p.L122S 0.25 deleterious(0) probably_damaging(0.979) TCGA-63-A5MH-01 1 28802626 28802626 G A PHACTR4 Missense_Mutation p.D487N 0.58 deleterious(0.01) probably_damaging(1) TCGA-63-A5MH-01 1 29391520 29391520 C T EPB41 Silent p.I678I 0.29 TCGA-63-A5MH-01 1 36929879 36929879 T A MRPS15 5'UTR 0.35 TCGA-63-A5MH-01 1 59247975 59247975 C T JUN Silent p.E256E 0.34 TCGA-63-A5MH-01 1 63284912 63284912 C G ATG4C Missense_Mutation p.L211V 0.54 tolerated(0.08) benign(0.002) TCGA-63-A5MH-01 1 70728299 70728299 C T ANKRD13C 3'UTR 0.52 TCGA-63-A5MH-01 1 74663941 74663941 C T FPGT 5'UTR 0.26 TCGA-63-A5MH-01 1 75184949 75184949 T C CRYZ Silent p.K124K 0.43 TCGA-63-A5MH-01 1 87379786 87379786 C G SEP15 5'UTR 0.27 TCGA-63-A5MH-01 20 29623234 29623234 T A FRG1B Missense_Mutation p.W16R 0.04 deleterious(0.03) benign(0.019) TCGA-63-A5MH-01 20 31434460 31434460 A C MAPRE1 Missense_Mutation p.K212Q 0.15 deleterious(0.03) probably_damaging(0.98) TCGA-63-A5MH-01 20 34091483 34091483 G A CEP250 Silent p.L1762L 0.85 TCGA-63-A5MH-01 20 34302155 34302155 C T RBM39 Missense_Mutation p.D350N 0.80 deleterious(0.04) benign(0.05) TCGA-63-A5MH-01 20 45865181 45865181 C A ZMYND8 Silent p.L869L 0.89 TCGA-63-A5MH-01 21 11039197 11039197 G T BAGE2 RNA 0.07 TCGA-63-A5MH-01 21 14982840 14982840 G C POTED Missense_Mutation p.K97N 0.29 tolerated_low_confidence(0.07) benign(0.005) TCGA-63-A5MH-01 21 45483506 45483506 G T TRAPPC10 Missense_Mutation p.R293L 0.35 deleterious(0) probably_damaging(0.998) TCGA-63-A5MH-01 21 45742020 45742020 A G PFKL Missense_Mutation p.Q448R 0.42 tolerated(0.71) benign(0.008) TCGA-63-A5MH-01 22 17288744 17288744 T C XKR3 Missense_Mutation p.I74V 0.50 tolerated(0.55) benign(0.394) TCGA-63-A5MH-01 22 21104272 21104272 T C PI4KA Missense_Mutation p.K1055R 0.08 tolerated(0.28) benign(0.033) TCGA-63-A5MH-01 22 22842335 22842344 GGAACACTGG - ZNF280B Frame_Shift_Del p.H460Qfs*8 0.34 TCGA-63-A5MH-01 22 23135442 23135442 G T IGLV2-11 Nonsense_Mutation p.E102* 0.42 TCGA-63-A5MH-01 22 23135454 23135454 G C IGLV2-11 Missense_Mutation p.D106H 0.41 deleterious_low_confidence(0.01) benign(0.061) TCGA-63-A5MH-01 22 31836000 31836000 C G EIF4ENIF1 Missense_Mutation p.E942Q 0.46 tolerated_low_confidence(0.17) benign(0.202) TCGA-63-A5MH-01 22 36715637 36715637 G A MYH9 Silent p.I352I 0.40 TCGA-63-A5MH-01 22 38823780 38823780 C T KCNJ4 Missense_Mutation p.G120S 0.45 tolerated(0.78) benign(0.022) TCGA-63-A5MH-01 22 39380231 39380231 G A APOBEC3B Missense_Mutation p.G57S 0.43 tolerated(0.07) probably_damaging(0.996) TCGA-63-A5MH-01 22 39439087 39439087 C T APOBEC3F Nonsense_Mutation p.R55* 0.30 TCGA-63-A5MH-01 22 39621807 39621807 C A PDGFB Missense_Mutation p.R216L 0.44 tolerated(0.1) benign(0.413) TCGA-63-A5MH-01 22 51045382 51045382 A - MAPK8IP2 Frame_Shift_Del p.N755Tfs*24 0.26 TCGA-63-A5MH-01 2 10136083 10136083 G A GRHL1 Missense_Mutation p.E526K 0.36 deleterious(0.02) benign(0.333) TCGA-63-A5MH-01 2 128051606 128051606 G C ERCC3 Intron 0.76 TCGA-63-A5MH-01 2 166245914 166245914 G T SCN2A Missense_Mutation p.L1866F 0.30 deleterious(0) probably_damaging(0.999) TCGA-63-A5MH-01 2 167162324 167162324 C G SCN9A Missense_Mutation p.D192H 0.87 deleterious(0) probably_damaging(1) TCGA-63-A5MH-01 2 179611411 179611411 G A TTN Intron 0.79 TCGA-63-A5MH-01 2 207814371 207814371 G - CPO Frame_Shift_Del p.D34Tfs*4 0.45 TCGA-63-A5MH-01 2 208425000 208425000 A T CREB1 Silent p.L55L 0.89 TCGA-63-A5MH-01 2 21236306 21236306 C A APOB Missense_Mutation p.E1314D 0.46 benign(0.011) TCGA-63-A5MH-01 2 216974074 216974074 A G XRCC5 5'UTR 1.00 TCGA-63-A5MH-01 2 228882078 228882078 C A SPHKAP Missense_Mutation p.M1164I 0.87 tolerated(0.12) benign(0.013) TCGA-63-A5MH-01 2 242794496 242794496 G T PDCD1 Missense_Mutation p.A149E 0.82 tolerated(1) benign(0.014) TCGA-63-A5MH-01 2 44021897 44021897 G C DYNC2LI1 Intron 0.46 TCGA-63-A5MH-01 2 48807986 48807986 A T STON1-GTF2A1L Missense_Mutation p.S72C 0.46 deleterious(0.04) probably_damaging(0.998) TCGA-63-A5MH-01 2 65248130 65248130 G C SLC1A4 Missense_Mutation p.K483N 0.12 tolerated(0.08) benign(0.13) TCGA-63-A5MH-01 2 69049720 69049720 C T ARHGAP25 Silent p.H483H 0.35 TCGA-63-A5MH-01 2 71577000 71577000 G C ZNF638 Missense_Mutation p.E306Q 0.47 tolerated(0.12) benign(0.13) TCGA-63-A5MH-01 2 74474284 74474284 G A SLC4A5 Silent p.F646F 0.40 TCGA-63-A5MH-01 2 74688992 74688992 C G MOGS Missense_Mutation p.E642Q 0.43 tolerated(0.17) benign(0.102) TCGA-63-A5MH-01 2 79314014 79314014 C A REG1B Missense_Mutation p.C36F 0.38 deleterious(0.01) benign(0.387) TCGA-63-A5MH-01 2 79363106 79363106 G T REG1P RNA 0.52 TCGA-63-A5MH-01 2 98409038 98409038 C T TMEM131 Missense_Mutation p.E1319K 0.83 tolerated_low_confidence(0.19) benign(0.054) TCGA-63-A5MH-01 3 107096887 107096887 G A CCDC54 Silent p.T151T 0.12 TCGA-63-A5MH-01 3 108380733 108380733 G A DZIP3 Missense_Mutation p.G737S 0.39 tolerated_low_confidence(0.59) benign(0.003) TCGA-63-A5MH-01 3 111710273 111710273 A C ABHD10 Missense_Mutation p.Y209S 0.32 deleterious(0.03) benign(0.3) TCGA-63-A5MH-01 3 111732346 111732346 G C TAGLN3 Missense_Mutation p.G183A 0.26 deleterious(0.01) probably_damaging(0.981) TCGA-63-A5MH-01 3 122186183 122186183 T C KPNA1 Missense_Mutation p.M75V 0.52 tolerated(0.32) benign(0.002) TCGA-63-A5MH-01 3 122634371 122634371 C T SEMA5B Missense_Mutation p.R689Q 0.35 tolerated(0.13) benign(0.177) TCGA-63-A5MH-01 3 128631556 128631556 C G ACAD9 3'UTR 0.17 TCGA-63-A5MH-01 3 130289886 130289886 C T COL6A6 Missense_Mutation p.L876F 0.17 deleterious(0.01) probably_damaging(0.943) TCGA-63-A5MH-01 3 133534522 133534522 A G SRPRB Missense_Mutation p.M167V 0.18 tolerated(1) benign(0) TCGA-63-A5MH-01 3 134369784 134369784 T A KY Missense_Mutation p.I7F 0.36 tolerated_low_confidence(0.12) benign(0.074) TCGA-63-A5MH-01 3 146309646 146309646 C A PLSCR5 Missense_Mutation p.G159V 0.34 deleterious(0) probably_damaging(1) TCGA-63-A5MH-01 3 150460325 150460325 T C SIAH2 Missense_Mutation p.K193R 0.28 tolerated(0.21) possibly_damaging(0.856) TCGA-63-A5MH-01 3 154862145 154862145 G C MME Intron 0.36 TCGA-63-A5MH-01 3 164905576 164905576 C A SLITRK3 3'UTR 0.40 TCGA-63-A5MH-01 3 169546635 169546635 C G LRRIQ4 Missense_Mutation p.S370C 0.15 tolerated(0.18) probably_damaging(0.928) TCGA-63-A5MH-01 3 169814811 169814811 A C PHC3 3'UTR 0.23 TCGA-63-A5MH-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.32 deleterious(0.04) probably_damaging(0.96) TCGA-63-A5MH-01 3 186937845 186937845 C T MASP1 3'UTR 0.44 TCGA-63-A5MH-01 3 36897931 36897931 G A TRANK1 Silent p.F1050F 0.80 TCGA-63-A5MH-01 3 38167166 38167166 A - ACAA1 Frame_Shift_Del p.E364Rfs*3 0.44 TCGA-63-A5MH-01 3 42230517 42230517 G T TRAK1 Missense_Mutation p.R197S 0.83 tolerated(0.49) probably_damaging(0.998) TCGA-63-A5MH-01 3 49689785 49689785 G T BSN Missense_Mutation p.K932N 0.80 unknown(0) TCGA-63-A5MH-01 3 67058594 67058594 C T KBTBD8 Nonsense_Mutation p.Q531* 0.84 TCGA-63-A5MH-01 3 9055091 9055091 A G SRGAP3 Missense_Mutation p.I683T 0.86 deleterious(0.04) probably_damaging(0.985) TCGA-63-A5MH-01 3 98519564 98519564 C T DCBLD2 Intron 0.17 TCGA-63-A5MH-01 4 100784211 100784211 A G DAPP1 Silent p.K194K 0.72 TCGA-63-A5MH-01 4 110754317 110754317 C T RRH Silent p.N43N 0.40 TCGA-63-A5MH-01 4 125591176 125591176 C A ANKRD50 Missense_Mutation p.A1086S 0.46 tolerated(0.19) possibly_damaging(0.475) TCGA-63-A5MH-01 4 126336104 126336104 A G FAT4 Missense_Mutation p.K1996E 0.39 benign(0.008) TCGA-63-A5MH-01 4 126371205 126371205 G T FAT4 Missense_Mutation p.D3012Y 0.31 probably_damaging(1) TCGA-63-A5MH-01 4 13578477 13578477 C A BOD1L1 Missense_Mutation p.R3008I 0.80 probably_damaging(0.999) TCGA-63-A5MH-01 4 164393430 164393430 G A TKTL2 Missense_Mutation p.T486I 0.76 deleterious(0.02) benign(0.288) TCGA-63-A5MH-01 4 6698779 6698779 G C S100P 3'UTR 0.06 TCGA-63-A5MH-01 4 69519797 69519797 C A UGT2B15 Missense_Mutation p.R424I 0.39 deleterious(0.04) benign(0.008) TCGA-63-A5MH-01 4 71201102 71201102 A G CABS1 Missense_Mutation p.M116V 0.31 tolerated(0.05) benign(0) TCGA-63-A5MH-01 4 71275640 71275640 G C PROL1 Missense_Mutation p.A199P 0.04 tolerated_low_confidence(0.05) unknown(0) TCGA-63-A5MH-01 4 89060947 89060947 G C ABCG2 Missense_Mutation p.I67M 0.46 deleterious(0.03) benign(0.234) TCGA-63-A5MH-01 4 95185899 95185899 G C SMARCAD1 Missense_Mutation p.L441F 0.36 deleterious(0.01) possibly_damaging(0.885) TCGA-63-A5MH-01 5 11236925 11236925 A C CTNND2 Missense_Mutation p.W547G 0.18 deleterious(0) probably_damaging(0.998) TCGA-63-A5MH-01 5 112920021 112920021 C G YTHDC2 Missense_Mutation p.P1224A 0.80 tolerated(0.79) benign(0.001) TCGA-63-A5MH-01 5 114483076 114483076 G T TRIM36 Nonsense_Mutation p.S105* 0.83 TCGA-63-A5MH-01 5 140215575 140215576 GC - PCDHA7 Frame_Shift_Del p.D539Cfs*59 0.73 TCGA-63-A5MH-01 5 140745781 140745781 A G PCDHGA5 Silent p.T628T 0.83 TCGA-63-A5MH-01 5 156592690 156592690 G C FAM71B Missense_Mutation p.L164V 0.86 deleterious(0) probably_damaging(0.953) TCGA-63-A5MH-01 5 21802404 21802404 C T CDH12 Silent p.L376L 0.31 TCGA-63-A5MH-01 5 23527366 23527366 G A PRDM9 Silent p.R723R 0.49 TCGA-63-A5MH-01 5 38496554 38496554 G A LIFR Silent p.I605I 0.29 TCGA-63-A5MH-01 5 58270869 58270869 C G PDE4D Missense_Mutation p.E684D 0.85 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-63-A5MH-01 5 74091986 74091986 C G FAM169A Missense_Mutation p.E377Q 0.85 deleterious(0) probably_damaging(0.983) TCGA-63-A5MH-01 5 79030185 79030185 C G CMYA5 Nonsense_Mutation p.S1866* 0.89 TCGA-63-A5MH-01 5 79030360 79030360 G C CMYA5 Silent p.L1924L 0.83 TCGA-63-A5MH-01 6 13182896 13182896 G A PHACTR1 Silent p.P214P 0.04 TCGA-63-A5MH-01 6 139251140 139251140 A G REPS1 Missense_Mutation p.W411R 0.41 tolerated(0.32) benign(0.261) TCGA-63-A5MH-01 6 153076501 153076501 C A VIP Missense_Mutation p.R110S 0.26 deleterious(0) benign(0.241) TCGA-63-A5MH-01 6 153076502 153076502 G T VIP Missense_Mutation p.R110L 0.26 deleterious(0.02) benign(0.009) TCGA-63-A5MH-01 6 165756942 165756942 T A PDE10A Missense_Mutation p.T679S 0.34 tolerated(0.2) benign(0.443) TCGA-63-A5MH-01 6 166580131 166580131 G A T Silent p.P140P 0.55 TCGA-63-A5MH-01 6 24302037 24302037 G C DCDC2 Missense_Mutation p.R155G 0.40 deleterious(0) probably_damaging(1) TCGA-63-A5MH-01 6 25770495 25770495 C T SLC17A4 Silent p.L166L 0.43 TCGA-63-A5MH-01 6 28333546 28333546 G T ZKSCAN3 Missense_Mutation p.E367D 0.54 deleterious(0) probably_damaging(0.999) TCGA-63-A5MH-01 6 31599689 31599689 G A PRRC2A Missense_Mutation p.R1080Q 0.58 unknown(0) TCGA-63-A5MH-01 6 32049929 32049929 C A RNA5SP206 5'Flank 0.36 TCGA-63-A5MH-01 6 32049930 32049930 C T RNA5SP206 5'Flank 0.38 TCGA-63-A5MH-01 6 34803096 34803096 C T UHRF1BP1 Missense_Mutation p.S232F 0.43 deleterious(0) probably_damaging(0.987) TCGA-63-A5MH-01 6 38883109 38883109 G C DNAH8 Missense_Mutation p.E3149Q 0.47 possibly_damaging(0.596) TCGA-63-A5MH-01 6 41621131 41621131 G A MDFI Missense_Mutation p.A187T 0.46 tolerated(0.06) probably_damaging(0.998) TCGA-63-A5MH-01 6 50681701 50681701 G C TFAP2D 5'UTR 0.54 TCGA-63-A5MH-01 6 52617777 52617777 C G GSTA2 Missense_Mutation p.E97Q 0.45 deleterious(0.01) benign(0.333) TCGA-63-A5MH-01 6 599210 599210 G C EXOC2 Missense_Mutation p.A253G 0.44 deleterious(0.01) probably_damaging(0.935) TCGA-63-A5MH-01 6 66063361 66063361 C A EYS Missense_Mutation p.L483F 0.47 tolerated(0.7) probably_damaging(0.934) TCGA-63-A5MH-01 6 90578670 90578670 G T CASP8AP2 RNA 0.22 TCGA-63-A5MH-01 7 104800975 104800975 A G SRPK2 Silent p.C200C 0.87 TCGA-63-A5MH-01 7 117243624 117243624 G C CFTR Missense_Mutation p.R899T 0.89 tolerated(0.58) benign(0.016) TCGA-63-A5MH-01 7 126173147 126173147 A G GRM8 Silent p.C763C 0.05 TCGA-63-A5MH-01 7 128455938 128455938 G C CCDC136 Missense_Mutation p.E1106Q 0.83 deleterious(0.01) possibly_damaging(0.888) TCGA-63-A5MH-01 7 132193209 132193209 C T PLXNA4 Missense_Mutation p.V82M 0.86 tolerated(0.11) possibly_damaging(0.609) TCGA-63-A5MH-01 7 134896287 134896287 G A WDR91 5'Flank 0.85 TCGA-63-A5MH-01 7 142032495 142032495 C T TRBV7-1 Silent p.D105D 0.85 TCGA-63-A5MH-01 7 142045277 142045277 C A TRBV4-2 5'UTR 0.43 TCGA-63-A5MH-01 7 150934589 150934589 C A CHPF2 Missense_Mutation p.Q381K 0.76 deleterious(0.05) benign(0.105) TCGA-63-A5MH-01 7 15584454 15584454 A G AGMO Missense_Mutation p.Y118H 0.45 deleterious(0.04) benign(0.264) TCGA-63-A5MH-01 7 17379283 17379283 A G AHR Missense_Mutation p.M612V 0.42 deleterious(0.03) benign(0.005) TCGA-63-A5MH-01 7 18705989 18705996 ACACTGGG - HDAC9 Frame_Shift_Del p.L542Sfs*14 0.42 TCGA-63-A5MH-01 7 18869159 18869159 G A HDAC9 Silent p.L818L 0.51 TCGA-63-A5MH-01 7 27147835 27147835 G - HOXA3 Frame_Shift_Del p.P344Rfs*32 0.42 TCGA-63-A5MH-01 7 27213430 27213430 C T HOXA10 Missense_Mutation p.E166K 0.56 deleterious(0) probably_damaging(0.987) TCGA-63-A5MH-01 7 27224659 27224659 G A HOXA11 Silent p.P35P 0.43 TCGA-63-A5MH-01 7 29976321 29976321 C T SCRN1 Silent p.Q272Q 0.39 TCGA-63-A5MH-01 7 44609624 44609624 G A DDX56 Nonsense_Mutation p.R372* 0.09 TCGA-63-A5MH-01 7 45143949 45143949 G C TBRG4 Intron 0.48 TCGA-63-A5MH-01 7 71175875 71175875 G T WBSCR17 Missense_Mutation p.V544F 0.81 tolerated(0.05) benign(0.245) TCGA-63-A5MH-01 8 100133594 100133594 A G VPS13B Missense_Mutation p.H376R 0.52 tolerated(0.39) benign(0.001) TCGA-63-A5MH-01 8 100147929 100147929 G A VPS13B Missense_Mutation p.A511T 0.52 tolerated(0.1) possibly_damaging(0.821) TCGA-63-A5MH-01 8 113308218 113308218 G T CSMD3 Missense_Mutation p.P2820T 0.44 deleterious(0) probably_damaging(0.992) TCGA-63-A5MH-01 8 120430309 120430309 G C NOV Missense_Mutation p.D108H 0.05 tolerated(0.12) benign(0.072) TCGA-63-A5MH-01 8 120594724 120594724 T A ENPP2 Silent p.P606P 0.43 TCGA-63-A5MH-01 8 2092728 2092728 C T MYOM2 Silent p.G1407G 0.44 TCGA-63-A5MH-01 8 30704073 30704073 C T TEX15 Missense_Mutation p.D821N 0.27 tolerated(0.1) benign(0.051) TCGA-63-A5MH-01 8 35541131 35541131 G T UNC5D Missense_Mutation p.D213Y 0.54 deleterious(0) probably_damaging(0.951) TCGA-63-A5MH-01 8 66621284 66621284 C T MTFR1 3'UTR 0.31 TCGA-63-A5MH-01 8 74893665 74893665 A C TMEM70 Missense_Mutation p.N198H 0.45 deleterious(0.02) possibly_damaging(0.815) TCGA-63-A5MH-01 9 107298355 107298355 G C OR13C3 Missense_Mutation p.S247C 0.83 deleterious(0) probably_damaging(1) TCGA-63-A5MH-01 9 21239677 21239677 C G IFNA14 Missense_Mutation p.Q86H 0.12 deleterious(0.04) possibly_damaging(0.666) TCGA-63-A5MH-01 X 101139495 101139495 C T ZMAT1 Missense_Mutation p.D302N 0.12 tolerated(0.06) benign(0.248) TCGA-63-A5MH-01 X 118767394 118767394 C G SEPT6 Missense_Mutation p.E340Q 0.04 tolerated(0.06) possibly_damaging(0.451) TCGA-63-A5MH-01 X 140786535 140786535 C A SPANXD Missense_Mutation p.V10L 0.61 tolerated_low_confidence(0.48) benign(0.005) TCGA-63-A5MH-01 X 63412707 63412707 C A AMER1 Missense_Mutation p.A154S 0.79 tolerated(0.23) benign(0.027) TCGA-63-A5MH-01 X 73963043 73963043 T A KIAA2022 Missense_Mutation p.Y450F 0.82 tolerated(0.33) benign(0.011) TCGA-63-A5MH-01 X 99943433 99943433 T A SYTL4 Missense_Mutation p.E307V 0.91 deleterious(0.02) benign(0.017) TCGA-63-A5MI-01 10 101147761 101147761 G A CNNM1 Splice_Site p.X842_splice 0.11 TCGA-63-A5MI-01 10 121436859 121436859 A G BAG3 3'UTR 0.30 TCGA-63-A5MI-01 10 1245960 1245960 C T ADARB2 Missense_Mutation p.E604K 0.32 tolerated(0.24) benign(0.242) TCGA-63-A5MI-01 10 134671183 134671183 T C TTC40 Missense_Mutation p.I1829V 0.12 tolerated(1) benign(0.001) TCGA-63-A5MI-01 10 16870815 16870815 A G CUBN Missense_Mutation p.Y3585H 0.58 deleterious(0) probably_damaging(0.992) TCGA-63-A5MI-01 10 16911849 16911849 G A CUBN Silent p.F3080F 0.20 TCGA-63-A5MI-01 10 18957577 18957577 T G ARL5B Missense_Mutation p.S76A 0.10 tolerated(0.51) benign(0.048) TCGA-63-A5MI-01 10 25464627 25464627 A C GPR158 Missense_Mutation p.Q93P 0.07 tolerated(0.21) benign(0.078) TCGA-63-A5MI-01 10 29812784 29812784 G C SVIL Missense_Mutation p.S920C 0.14 deleterious_low_confidence(0.03) benign(0.003) TCGA-63-A5MI-01 10 30316609 30316609 G A KIAA1462 Missense_Mutation p.P823L 0.07 deleterious(0) probably_damaging(1) TCGA-63-A5MI-01 10 50820460 50820460 C T SLC18A3 3'UTR 0.32 TCGA-63-A5MI-01 10 6262656 6262656 G A PFKFB3 Missense_Mutation p.R220Q 0.13 benign(0.011) TCGA-63-A5MI-01 11 100933471 100933471 T A PGR Missense_Mutation p.K640I 0.10 deleterious(0) probably_damaging(0.988) TCGA-63-A5MI-01 11 110501439 110501439 C G ARHGAP20 Missense_Mutation p.D89H 0.16 tolerated(0.32) possibly_damaging(0.685) TCGA-63-A5MI-01 11 119216849 119216849 G T MFRP Silent p.R60R 0.81 TCGA-63-A5MI-01 11 124761344 124761344 T A ROBO4 Missense_Mutation p.Q600L 0.68 tolerated(0.3) benign(0.05) TCGA-63-A5MI-01 11 131781416 131781416 T A NTM Missense_Mutation p.L14H 0.04 deleterious(0.01) probably_damaging(0.982) TCGA-63-A5MI-01 11 40137799 40137799 C T LRRC4C Missense_Mutation p.G15D 0.27 tolerated_low_confidence(0.35) possibly_damaging(0.878) TCGA-63-A5MI-01 11 5080436 5080436 T C OR52E2 Missense_Mutation p.K141R 0.42 tolerated(0.51) benign(0.079) TCGA-63-A5MI-01 11 55433522 55433522 A T OR4C6 Missense_Mutation p.S294C 0.24 deleterious_low_confidence(0) benign(0.155) TCGA-63-A5MI-01 11 57506149 57506149 G A TMX2 Missense_Mutation p.R152Q 0.29 tolerated(0.06) benign(0.002) TCGA-63-A5MI-01 11 5809518 5809518 G T OR52N1 Missense_Mutation p.P177T 0.49 deleterious(0.02) benign(0.024) TCGA-63-A5MI-01 11 58377336 58377336 C G ZFP91 Missense_Mutation p.S135C 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.533) TCGA-63-A5MI-01 11 58919475 58919475 C T FAM111A Nonsense_Mutation p.Q112* 0.09 TCGA-63-A5MI-01 11 686966 686966 C T DEAF1 Silent p.E232E 0.18 TCGA-63-A5MI-01 11 74413992 74413992 G T CHRDL2 Missense_Mutation p.H323N 0.33 tolerated(0.18) benign(0.009) TCGA-63-A5MI-01 11 82571042 82571042 T A PRCP Missense_Mutation p.I117F 0.22 deleterious(0) probably_damaging(0.997) TCGA-63-A5MI-01 11 89028499 89028499 G C TYR Missense_Mutation p.E519Q 0.39 tolerated(0.08) benign(0.022) TCGA-63-A5MI-01 11 95550978 95550978 G C CEP57 Missense_Mutation p.D178H 0.19 deleterious(0.04) probably_damaging(1) TCGA-63-A5MI-01 12 117768556 117768556 G T NOS1 Missense_Mutation p.L107M 0.08 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-63-A5MI-01 12 120878332 120878332 G C COX6A1 Missense_Mutation p.D108H 0.37 deleterious(0) probably_damaging(0.988) TCGA-63-A5MI-01 12 123095384 123095384 C A KNTC1 Silent p.L1853L 0.15 TCGA-63-A5MI-01 12 14018823 14018823 G A GRIN2B Missense_Mutation p.A107V 0.32 deleterious(0.01) probably_damaging(0.983) TCGA-63-A5MI-01 12 20787835 20787835 G C PDE3A Splice_Site p.X616_splice 0.36 TCGA-63-A5MI-01 12 21200027 21200027 G T SLCO1B7 Silent p.L290L 0.38 TCGA-63-A5MI-01 12 3782623 3782623 A G EFCAB4B Silent p.C220C 0.09 TCGA-63-A5MI-01 12 49231779 49231779 C G DDX23 Missense_Mutation p.E189Q 0.17 tolerated(0.1) benign(0.368) TCGA-63-A5MI-01 12 53170747 53170747 C T KRT76 Missense_Mutation p.R110K 0.23 tolerated(0.42) unknown(0) TCGA-63-A5MI-01 12 53171037 53171037 C A KRT76 Missense_Mutation p.R13S 0.22 tolerated(0.99) unknown(0) TCGA-63-A5MI-01 12 53586937 53586937 G T ITGB7 Silent p.G571G 0.39 TCGA-63-A5MI-01 12 63544005 63544005 C G AVPR1A Missense_Mutation p.W204C 0.32 deleterious(0) probably_damaging(0.999) TCGA-63-A5MI-01 12 6472783 6472783 G C SCNN1A Silent p.L229L 0.25 TCGA-63-A5MI-01 12 7473380 7473380 C T ACSM4 Silent p.L327L 0.18 TCGA-63-A5MI-01 12 8692456 8692456 C T CLEC4E Missense_Mutation p.C42Y 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-63-A5MI-01 12 95501341 95501341 G - FGD6 Frame_Shift_Del p.L1111Cfs*19 0.10 TCGA-63-A5MI-01 13 58208857 58208857 T A PCDH17 Missense_Mutation p.I726N 0.45 deleterious(0) probably_damaging(0.961) TCGA-63-A5MI-01 14 103803536 103803536 C T EIF5 Silent p.L137L 0.09 TCGA-63-A5MI-01 14 106791139 106791139 C T IGHV3-30 Missense_Mutation p.D73N 0.07 tolerated_low_confidence(0.27) benign(0.109) TCGA-63-A5MI-01 14 19553780 19553780 G T POTEG Missense_Mutation p.D122Y 0.05 deleterious(0) possibly_damaging(0.713) TCGA-63-A5MI-01 14 20872799 20872799 C G TEP1 Missense_Mutation p.D335H 0.14 deleterious(0) probably_damaging(1) TCGA-63-A5MI-01 14 24619987 24619987 G A RNF31 Missense_Mutation p.G460R 0.30 tolerated(0.52) benign(0.002) TCGA-63-A5MI-01 14 28734206 28734206 G A BNIP3P1 RNA 0.24 TCGA-63-A5MI-01 14 51411032 51411032 C G PYGL Missense_Mutation p.K30N 0.15 tolerated(0.08) benign(0.181) TCGA-63-A5MI-01 14 55607035 55607035 C T LGALS3 Missense_Mutation p.R129C 0.16 deleterious(0) probably_damaging(0.974) TCGA-63-A5MI-01 14 58036553 58036553 G T SLC35F4 Missense_Mutation p.A396D 0.26 tolerated(0.63) benign(0.282) TCGA-63-A5MI-01 14 59798567 59798567 G A DAAM1 Missense_Mutation p.D633N 0.24 deleterious(0) probably_damaging(0.998) TCGA-63-A5MI-01 14 64746797 64746797 G A ESR2 Missense_Mutation p.A146V 0.14 tolerated(0.15) benign(0.008) TCGA-63-A5MI-01 14 73437797 73437802 AGGCCT - ZFYVE1 In_Frame_Del p.R708_P709del 0.26 TCGA-63-A5MI-01 14 74083762 74083762 A T ACOT6 5'UTR 0.36 TCGA-63-A5MI-01 14 78399611 78399611 T C ADCK1 Silent p.S483S 0.27 TCGA-63-A5MI-01 14 89305864 89305864 G C TTC8 Missense_Mutation p.Q71H 0.32 deleterious(0.01) benign(0.256) TCGA-63-A5MI-01 14 92074644 92074644 C T CATSPERB Missense_Mutation p.M901I 0.07 tolerated(0.14) benign(0.004) TCGA-63-A5MI-01 14 95934192 95934192 C A SYNE3 Missense_Mutation p.R86L 0.23 tolerated(0.07) benign(0.006) TCGA-63-A5MI-01 15 23812240 23812240 A T MKRN3 Silent p.S437S 0.07 TCGA-63-A5MI-01 15 25219547 25219547 C G SNRPN 5'UTR 0.18 TCGA-63-A5MI-01 15 25458663 25458663 C A SNORD115-22 3'Flank 0.31 TCGA-63-A5MI-01 15 25458664 25458664 A C SNORD115-22 3'Flank 0.29 TCGA-63-A5MI-01 15 25479474 25479474 C T SNORD115-35 RNA 0.15 TCGA-63-A5MI-01 15 28366572 28366572 C A HERC2 Missense_Mutation p.A4398S 0.07 benign(0.376) TCGA-63-A5MI-01 15 34130072 34130072 C A RYR3 Nonsense_Mutation p.S3964* 0.23 TCGA-63-A5MI-01 15 34649033 34649033 C A NUTM1 Missense_Mutation p.L914I 0.15 deleterious(0.05) benign(0.056) TCGA-63-A5MI-01 15 77907844 77907844 C T LINGO1 Silent p.P135P 0.17 TCGA-63-A5MI-01 15 88576214 88576214 C T NTRK3 Missense_Mutation p.G487S 0.27 deleterious(0.05) possibly_damaging(0.907) TCGA-63-A5MI-01 16 1033848 1033848 C A SOX8 Silent p.A181A 0.26 TCGA-63-A5MI-01 16 21139092 21139092 G C DNAH3 Missense_Mutation p.A375G 0.04 tolerated(0.35) benign(0) TCGA-63-A5MI-01 16 27373697 27373697 T C IL4R Missense_Mutation p.C342R 0.08 tolerated(0.41) benign(0.002) TCGA-63-A5MI-01 16 3072938 3072938 G A HCFC1R1 Missense_Mutation p.R115C 0.12 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-63-A5MI-01 16 30776634 30776634 G C RNF40 Missense_Mutation p.E302Q 0.22 deleterious(0) probably_damaging(0.994) TCGA-63-A5MI-01 16 31368598 31368598 G T ITGAX Nonsense_Mutation p.E115* 0.53 TCGA-63-A5MI-01 16 3367803 3367803 T A ZNF75A Nonsense_Mutation p.C275* 0.25 TCGA-63-A5MI-01 16 56912054 56912054 G T SLC12A3 Silent p.L387L 0.48 TCGA-63-A5MI-01 17 11881297 11881297 A C ZNF18 Missense_Mutation p.L543V 0.05 tolerated(0.25) benign(0.109) TCGA-63-A5MI-01 17 19286440 19286440 G A MAPK7 Missense_Mutation p.E783K 0.30 deleterious(0) probably_damaging(0.909) TCGA-63-A5MI-01 17 25910132 25910132 G T KSR1 Splice_Site p.X190_splice 0.40 TCGA-63-A5MI-01 17 34235952 34235952 G A AC015849.16 RNA 0.06 TCGA-63-A5MI-01 17 48646579 48646579 G A CACNA1G Missense_Mutation p.M136I 0.06 deleterious(0) probably_damaging(0.999) TCGA-63-A5MI-01 17 5087016 5087016 C T ZNF594 Missense_Mutation p.G179E 0.12 deleterious(0.01) possibly_damaging(0.485) TCGA-63-A5MI-01 17 5235350 5235350 G A RABEP1 Silent p.A90A 0.46 TCGA-63-A5MI-01 17 61911057 61911059 TCT - SMARCD2 In_Frame_Del p.K402del 0.19 TCGA-63-A5MI-01 17 65163888 65163888 C T HELZ Silent p.Q485Q 0.11 TCGA-63-A5MI-01 17 7416964 7416964 C G POLR2A Nonsense_Mutation p.S1794* 0.50 TCGA-63-A5MI-01 17 7578505 7578505 G - TP53 Frame_Shift_Del p.P142Lfs*28 0.28 TCGA-63-A5MI-01 17 76851939 76851939 C T TIMP2 Missense_Mutation p.R158H 0.09 tolerated(0.16) benign(0.123) TCGA-63-A5MI-01 17 78261643 78261643 G C RNF213 Missense_Mutation p.K97N 0.09 benign(0.287) TCGA-63-A5MI-01 17 78261923 78261923 C G RNF213 Missense_Mutation p.Q191E 0.08 benign(0.015) TCGA-63-A5MI-01 17 78262019 78262019 C G RNF213 Missense_Mutation p.P223A 0.11 benign(0.027) TCGA-63-A5MI-01 17 78262106 78262106 G A RNF213 Missense_Mutation p.E252K 0.05 benign(0.017) TCGA-63-A5MI-01 17 78263544 78263544 G C RNF213 Missense_Mutation p.K340N 0.13 benign(0.216) TCGA-63-A5MI-01 17 78263614 78263614 G A RNF213 Missense_Mutation p.D364N 0.21 benign(0.014) TCGA-63-A5MI-01 17 78264442 78264442 G C RNF213 Missense_Mutation p.D396H 0.06 benign(0.003) TCGA-63-A5MI-01 17 78268694 78268694 G C RNF213 Silent p.L549L 0.10 TCGA-63-A5MI-01 17 78269570 78269570 G T RNF213 Nonsense_Mutation p.E657* 0.08 TCGA-63-A5MI-01 17 78269582 78269582 G T RNF213 Missense_Mutation p.D661Y 0.07 probably_damaging(0.915) TCGA-63-A5MI-01 17 8027397 8027397 G A HES7 Silent p.V2V 0.24 TCGA-63-A5MI-01 17 882572 882572 T C NXN Missense_Mutation p.E116G 0.52 deleterious(0.03) benign(0.096) TCGA-63-A5MI-01 18 47489319 47489319 C G MYO5B Silent p.S468S 0.16 TCGA-63-A5MI-01 19 17283760 17283760 G A MYO9B Missense_Mutation p.E710K 0.35 tolerated(0.5) possibly_damaging(0.874) TCGA-63-A5MI-01 19 17650003 17650003 G C FAM129C Missense_Mutation p.A245P 0.36 deleterious(0) probably_damaging(0.994) TCGA-63-A5MI-01 19 19039031 19039031 G A DDX49 Missense_Mutation p.R453Q 0.25 tolerated_low_confidence(0.14) benign(0.003) TCGA-63-A5MI-01 19 19308921 19308921 C T RFXANK Silent p.A148A 0.06 TCGA-63-A5MI-01 19 21240114 21240114 A G ZNF430 Missense_Mutation p.T334A 0.18 tolerated(0.32) benign(0.002) TCGA-63-A5MI-01 19 34895643 34895643 G T RP11-618P17.4 Silent p.L95L 0.28 TCGA-63-A5MI-01 19 36297655 36297655 C A PRODH2 Silent p.V328V 0.09 TCGA-63-A5MI-01 19 3819098 3819098 C T ZFR2 Missense_Mutation p.D626N 0.10 deleterious(0.02) possibly_damaging(0.717) TCGA-63-A5MI-01 19 3983134 3983135 - CGC EEF2 In_Frame_Ins p.G124dup 0.12 TCGA-63-A5MI-01 19 39980431 39980431 C T TIMM50 Missense_Mutation p.R448C 0.71 deleterious(0.02) benign(0.246) TCGA-63-A5MI-01 19 41063207 41063207 G A SPTBN4 Silent p.R1856R 0.14 TCGA-63-A5MI-01 19 52941252 52941252 A G ZNF534 Missense_Mutation p.H193R 0.09 deleterious(0.03) benign(0.015) TCGA-63-A5MI-01 19 53050865 53050865 A G ZNF808 Missense_Mutation p.E55G 0.56 deleterious(0) probably_damaging(0.982) TCGA-63-A5MI-01 19 56113447 56113447 C A ZNF524 5'UTR 0.60 TCGA-63-A5MI-01 19 603562 603562 C A HCN2 Silent p.T217T 0.45 TCGA-63-A5MI-01 19 8993529 8993529 C A MUC16 Nonsense_Mutation p.E13854* 0.21 TCGA-63-A5MI-01 19 9028326 9028326 C T MUC16 Missense_Mutation p.G12156R 0.16 possibly_damaging(0.775) TCGA-63-A5MI-01 1 113456454 113456454 G C SLC16A1 3'UTR 0.20 TCGA-63-A5MI-01 1 151110262 151110262 G T SEMA6C Silent p.V227V 0.10 TCGA-63-A5MI-01 1 15541850 15541850 G T TMEM51 Missense_Mutation p.R89S 0.43 deleterious(0) benign(0.392) TCGA-63-A5MI-01 1 157648466 157648466 A T FCRL3 3'UTR 0.38 TCGA-63-A5MI-01 1 158627404 158627404 T C SPTA1 Missense_Mutation p.R890G 0.20 tolerated(0.11) possibly_damaging(0.872) TCGA-63-A5MI-01 1 16355271 16355271 C T CLCNKA Silent p.S328S 0.19 TCGA-63-A5MI-01 1 169857986 169857986 T G SCYL3 5'UTR 0.23 TCGA-63-A5MI-01 1 169951869 169951869 G A KIFAP3 Missense_Mutation p.P549L 0.18 deleterious(0) possibly_damaging(0.609) TCGA-63-A5MI-01 1 170508382 170508382 G C GORAB Silent p.A56A 0.17 TCGA-63-A5MI-01 1 176998786 176998786 G T ASTN1 Missense_Mutation p.S368R 0.19 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-63-A5MI-01 1 178412042 178412042 A G RASAL2 Missense_Mutation p.K387R 0.44 tolerated(0.57) probably_damaging(0.99) TCGA-63-A5MI-01 1 228548252 228548252 C A OBSCN Intron 0.41 TCGA-63-A5MI-01 1 3544132 3544132 A G TPRG1L Missense_Mutation p.N180S 0.25 deleterious(0) probably_damaging(0.925) TCGA-63-A5MI-01 1 3548220 3548220 G A WRAP73 Silent p.D350D 0.31 TCGA-63-A5MI-01 1 38061491 38061491 C T GNL2 5'UTR 0.47 TCGA-63-A5MI-01 1 40029291 40029291 G C PABPC4 Missense_Mutation p.L555V 0.43 tolerated(0.88) benign(0.043) TCGA-63-A5MI-01 1 45223599 45223599 C G KIF2C Missense_Mutation p.S363C 0.29 deleterious(0.01) benign(0.045) TCGA-63-A5MI-01 1 46472059 46472060 - A MAST2 Frame_Shift_Ins p.S299Kfs*12 0.24 TCGA-63-A5MI-01 1 53074210 53074210 C G GPX7 3'UTR 0.20 TCGA-63-A5MI-01 1 53990555 53990555 C T GLIS1 Silent p.P321P 0.47 TCGA-63-A5MI-01 1 75036921 75036921 T C C1orf173 Silent p.L1491L 0.47 TCGA-63-A5MI-01 1 7724855 7724855 C A CAMTA1 Missense_Mutation p.P750T 0.22 tolerated_low_confidence(0.09) benign(0.357) TCGA-63-A5MI-01 1 8075645 8075645 C G ERRFI1 Missense_Mutation p.R12T 0.20 tolerated(0.25) possibly_damaging(0.892) TCGA-63-A5MI-01 1 93160884 93160884 C G EVI5 Missense_Mutation p.D342H 0.33 deleterious(0) probably_damaging(0.988) TCGA-63-A5MI-01 1 93744058 93744058 G C CCDC18 3'UTR 0.13 TCGA-63-A5MI-01 1 9795136 9795136 G A CLSTN1 Silent p.V660V 0.13 TCGA-63-A5MI-01 20 1517834 1517834 G T SIRPD Missense_Mutation p.P182T 0.14 tolerated_low_confidence(0.05) possibly_damaging(0.641) TCGA-63-A5MI-01 20 20016774 20016774 G C CRNKL1 3'UTR 0.19 TCGA-63-A5MI-01 20 29632687 29632687 A G FRG1B Missense_Mutation p.K168E 0.03 tolerated(0.67) benign(0.085) TCGA-63-A5MI-01 20 32664875 32664875 G A RALY Missense_Mutation p.G234S 0.46 tolerated_low_confidence(0.42) benign(0.004) TCGA-63-A5MI-01 20 34828309 34828309 C T AAR2 Silent p.R173R 0.38 TCGA-63-A5MI-01 20 62572537 62572537 C T UCKL1 Silent p.Q316Q 0.33 TCGA-63-A5MI-01 21 31986058 31986058 G T KRTAP6-1 Missense_Mutation p.L56I 0.34 unknown(0) TCGA-63-A5MI-01 21 34926996 34926996 C G SON Missense_Mutation p.S1820C 0.21 benign(0.184) TCGA-63-A5MI-01 21 35154397 35154397 C A ITSN1 Nonsense_Mutation p.S595* 0.13 TCGA-63-A5MI-01 21 45860724 45860724 A T TRPM2 Missense_Mutation p.E1441V 0.21 deleterious(0) probably_damaging(0.955) TCGA-63-A5MI-01 21 47904705 47904705 G A DIP2A Missense_Mutation p.A43T 0.14 tolerated(0.2) benign(0.003) TCGA-63-A5MI-01 22 22677191 22677191 G A IGLV1-51 Silent p.K73K 0.42 TCGA-63-A5MI-01 22 23090157 23090157 C T IGLV3-16 Silent p.S32S 0.37 TCGA-63-A5MI-01 22 24458430 24458430 C G CABIN1 Silent p.L546L 0.14 TCGA-63-A5MI-01 22 30951767 30951767 C A GAL3ST1 Missense_Mutation p.V149L 0.17 deleterious(0.04) benign(0.123) TCGA-63-A5MI-01 22 31671211 31671211 C G LIMK2 Missense_Mutation p.F542L 0.09 deleterious(0) possibly_damaging(0.839) TCGA-63-A5MI-01 22 35719874 35719874 C T TOM1 Silent p.S205S 0.22 TCGA-63-A5MI-01 22 37962643 37962643 C T CDC42EP1 Missense_Mutation p.P96L 0.33 tolerated(0.08) possibly_damaging(0.521) TCGA-63-A5MI-01 22 40813406 40813406 G C MKL1 Missense_Mutation p.S719C 0.17 deleterious(0.01) benign(0.41) TCGA-63-A5MI-01 22 50894939 50894939 C A SBF1 Silent p.G1356G 0.23 TCGA-63-A5MI-01 2 106710394 106710394 A C UXS1 3'UTR 0.17 TCGA-63-A5MI-01 2 113317039 113317039 G T POLR1B Silent p.V500V 0.33 TCGA-63-A5MI-01 2 113343947 113343947 G C CHCHD5 Intron 0.37 TCGA-63-A5MI-01 2 121043490 121043490 G C RALB Missense_Mutation p.R52T 0.14 deleterious(0) probably_damaging(0.986) TCGA-63-A5MI-01 2 121043571 121043571 G A RALB Missense_Mutation p.R79Q 0.18 deleterious(0.02) probably_damaging(0.963) TCGA-63-A5MI-01 2 141771262 141771262 C A LRP1B Missense_Mutation p.G748V 0.26 probably_damaging(0.953) TCGA-63-A5MI-01 2 163163338 163163338 C T IFIH1 Missense_Mutation p.G217D 0.21 tolerated(0.41) benign(0.003) TCGA-63-A5MI-01 2 1667458 1667458 C G PXDN Missense_Mutation p.D496H 0.31 tolerated(0.09) benign(0.286) TCGA-63-A5MI-01 2 170518871 170518871 C T CCDC173 Silent p.Q246Q 0.15 TCGA-63-A5MI-01 2 179615321 179615321 G A TTN Intron 0.26 TCGA-63-A5MI-01 2 201846128 201846128 T A FAM126B Silent p.R486R 0.70 TCGA-63-A5MI-01 2 202025164 202025164 G A CFLAR Missense_Mutation p.R268Q 0.13 tolerated(0.36) benign(0.015) TCGA-63-A5MI-01 2 219566668 219566668 G A STK36 Missense_Mutation p.R1295K 0.59 tolerated(0.07) benign(0.004) TCGA-63-A5MI-01 2 220089928 220089928 C G ATG9A Missense_Mutation p.Q127H 0.46 tolerated(0.08) possibly_damaging(0.553) TCGA-63-A5MI-01 2 26459762 26459762 G A HADHA Missense_Mutation p.S92L 0.34 deleterious(0) probably_damaging(1) TCGA-63-A5MI-01 2 26798848 26798848 C T C2orf70 Silent p.D51D 0.35 TCGA-63-A5MI-01 2 27258023 27258023 G C TMEM214 Missense_Mutation p.Q124H 0.16 deleterious(0.01) possibly_damaging(0.781) TCGA-63-A5MI-01 2 28754994 28754994 A T PLB1 Missense_Mutation p.D163V 0.29 deleterious(0) probably_damaging(0.991) TCGA-63-A5MI-01 2 33623490 33623490 A G LTBP1 Missense_Mutation p.I1682V 0.34 tolerated(0.18) possibly_damaging(0.852) TCGA-63-A5MI-01 2 40405632 40405632 T C SLC8A1 Missense_Mutation p.K604E 0.30 deleterious(0.01) probably_damaging(0.909) TCGA-63-A5MI-01 2 63720074 63720074 C T WDPCP Missense_Mutation p.D26N 0.16 tolerated_low_confidence(0.55) benign(0.001) TCGA-63-A5MI-01 2 73836709 73836709 A G ALMS1 Silent p.Q4158Q 0.34 TCGA-63-A5MI-01 2 77746288 77746288 A C LRRTM4 Nonsense_Mutation p.L236* 0.17 TCGA-63-A5MI-01 2 80085164 80085164 C G CTNNA2 Silent p.S108S 0.13 TCGA-63-A5MI-01 2 89156923 89156923 T C IGKC Missense_Mutation p.Q92R 0.32 tolerated(0.06) benign(0.02) TCGA-63-A5MI-01 3 112256703 112256704 - AA ATG3 Frame_Shift_Ins p.C182Ffs*47 0.23 TCGA-63-A5MI-01 3 119445047 119445047 G A MAATS1 Missense_Mutation p.V238M 0.46 tolerated(0.06) possibly_damaging(0.792) TCGA-63-A5MI-01 3 131442411 131442411 G C CPNE4 Missense_Mutation p.T80S 0.06 tolerated(0.43) benign(0.055) TCGA-63-A5MI-01 3 142557645 142557645 C G PCOLCE2 Missense_Mutation p.R226T 0.38 deleterious(0) probably_damaging(0.969) TCGA-63-A5MI-01 3 185327041 185327041 C T SENP2 Nonsense_Mutation p.Q209* 0.10 TCGA-63-A5MI-01 3 186969542 186969542 T C MASP1 Splice_Site p.X298_splice 0.08 TCGA-63-A5MI-01 3 195398017 195398017 G A SDHAP2 RNA 0.12 TCGA-63-A5MI-01 3 37089073 37089073 G T MLH1 Nonsense_Mutation p.E599* 0.17 TCGA-63-A5MI-01 3 37090013 37090013 G C MLH1 Silent p.G634G 0.24 TCGA-63-A5MI-01 4 108991844 108991844 G A LEF1 Missense_Mutation p.P364L 0.08 deleterious(0) probably_damaging(1) TCGA-63-A5MI-01 4 119718934 119718934 T C SEC24D Silent p.T315T 0.41 TCGA-63-A5MI-01 4 155505747 155505747 G A FGA Silent p.G710G 0.51 TCGA-63-A5MI-01 4 178274590 178274590 C G NEIL3 Missense_Mutation p.L390V 0.28 deleterious(0.01) probably_damaging(0.953) TCGA-63-A5MI-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.59 deleterious(0.01) possibly_damaging(0.594) TCGA-63-A5MI-01 4 52777264 52777264 A G DCUN1D4 Missense_Mutation p.N215S 0.61 tolerated(0.07) benign(0.063) TCGA-63-A5MI-01 4 55599327 55599327 A G KIT Missense_Mutation p.K818R 0.51 tolerated(0.73) benign(0.011) TCGA-63-A5MI-01 4 56475324 56475324 A G NMU Missense_Mutation p.L81P 0.38 deleterious(0) possibly_damaging(0.819) TCGA-63-A5MI-01 4 69696675 69696675 C A UGT2B10 3'UTR 0.64 TCGA-63-A5MI-01 4 70715271 70715271 A G SULT1E1 Missense_Mutation p.L127P 0.54 deleterious(0) probably_damaging(0.985) TCGA-63-A5MI-01 4 81121431 81121431 G A PRDM8 Missense_Mutation p.R66K 0.16 deleterious(0.02) benign(0.023) TCGA-63-A5MI-01 5 118877679 118877679 C G HSD17B4 Missense_Mutation p.A759G 0.44 deleterious(0.01) possibly_damaging(0.782) TCGA-63-A5MI-01 5 140764573 140764573 G A PCDHGA7 Missense_Mutation p.V703I 0.42 tolerated_low_confidence(0.18) benign(0.076) TCGA-63-A5MI-01 5 158589946 158589946 A T RNF145 Silent p.S451S 0.42 TCGA-63-A5MI-01 5 168006307 168006307 G A PANK3 5'UTR 0.27 TCGA-63-A5MI-01 5 175391981 175391981 T C THOC3 Missense_Mutation p.N201S 0.25 tolerated(0.49) benign(0.004) TCGA-63-A5MI-01 5 1815984 1815984 G T NDUFS6 Missense_Mutation p.G110V 0.55 deleterious(0.02) probably_damaging(0.999) TCGA-63-A5MI-01 5 35876308 35876308 T C IL7R Missense_Mutation p.L367P 0.05 tolerated(0.15) benign(0.013) TCGA-63-A5MI-01 5 41939714 41939714 G A FBXO4 Nonsense_Mutation p.W357* 0.14 TCGA-63-A5MI-01 5 64050178 64050178 C T SREK1IP1 Missense_Mutation p.D9N 0.45 deleterious(0.03) probably_damaging(0.953) TCGA-63-A5MI-01 6 100395751 100395751 C T MCHR2 Nonsense_Mutation p.W93* 0.18 TCGA-63-A5MI-01 6 112035591 112035591 C G FYN Silent p.L101L 0.12 TCGA-63-A5MI-01 6 11778874 11778874 C T ADTRP Missense_Mutation p.G40D 0.20 deleterious(0.01) possibly_damaging(0.799) TCGA-63-A5MI-01 6 121613220 121613220 T C TBC1D32 Missense_Mutation p.I451V 0.38 tolerated(0.99) benign(0.007) TCGA-63-A5MI-01 6 138657565 138657565 G A KIAA1244 Missense_Mutation p.R2159H 0.11 deleterious(0) probably_damaging(0.999) TCGA-63-A5MI-01 6 160969679 160969679 C T LPA Missense_Mutation p.M1662I 0.24 tolerated(0.18) possibly_damaging(0.511) TCGA-63-A5MI-01 6 170105424 170105424 C A PHF10 Intron 0.12 TCGA-63-A5MI-01 6 17772185 17772185 T C KIF13A Missense_Mutation p.H1477R 0.31 tolerated(0.25) benign(0.027) TCGA-63-A5MI-01 6 21594886 21594886 T C SOX4 Missense_Mutation p.S41P 0.21 deleterious(0.04) benign(0.307) TCGA-63-A5MI-01 6 25726745 25726745 C A HIST1H2AA Missense_Mutation p.R4L 0.32 deleterious_low_confidence(0.04) benign(0.01) TCGA-63-A5MI-01 6 28541081 28541081 T C SCAND3 Missense_Mutation p.K862R 0.36 tolerated(0.16) benign(0.202) TCGA-63-A5MI-01 6 31713065 31713065 C T MSH5 Silent p.A245A 0.28 TCGA-63-A5MI-01 6 350844 350844 C A DUSP22 Missense_Mutation p.F177L 0.16 tolerated_low_confidence(0.42) benign(0) TCGA-63-A5MI-01 6 36169496 36169496 A G BRPF3 Missense_Mutation p.D466G 0.04 tolerated(0.21) benign(0.002) TCGA-63-A5MI-01 6 44227877 44227877 C T NFKBIE Missense_Mutation p.R447Q 0.13 deleterious(0.02) probably_damaging(0.997) TCGA-63-A5MI-01 6 53989363 53989363 G T MLIP Silent p.T104T 0.19 TCGA-63-A5MI-01 6 57072429 57072429 G A RAB23 Nonsense_Mutation p.R80* 0.16 TCGA-63-A5MI-01 7 100685905 100685905 A T MUC17 Silent p.A3736A 0.05 TCGA-63-A5MI-01 7 101882778 101882778 A G CUX1 Silent p.P1278P 0.40 TCGA-63-A5MI-01 7 107667334 107667334 T C LAMB4 Intron 0.25 TCGA-63-A5MI-01 7 126542629 126542629 C G GRM8 Missense_Mutation p.G375R 0.40 tolerated(0.12) benign(0.157) TCGA-63-A5MI-01 7 128588879 128588879 T C IRF5 3'UTR 0.12 TCGA-63-A5MI-01 7 139706983 139706984 GT - TBXAS1 Splice_Site p.X456_splice 0.43 TCGA-63-A5MI-01 7 142239743 142239743 G C TRBV9 Missense_Mutation p.S46C 0.38 deleterious(0) probably_damaging(0.987) TCGA-63-A5MI-01 7 150647211 150647211 C A KCNH2 Intron 0.19 TCGA-63-A5MI-01 7 150737592 150737592 G A ABCB8 Missense_Mutation p.R420Q 0.16 deleterious(0.02) possibly_damaging(0.843) TCGA-63-A5MI-01 7 37927887 37927887 C G NME8 Missense_Mutation p.A419G 0.56 deleterious(0) probably_damaging(0.955) TCGA-63-A5MI-01 7 43540356 43540356 G A HECW1 Missense_Mutation p.D1166N 0.18 deleterious(0.02) possibly_damaging(0.721) TCGA-63-A5MI-01 7 87479260 87479260 C T SLC25A40 Missense_Mutation p.A90T 0.17 deleterious(0) probably_damaging(1) TCGA-63-A5MI-01 8 101540194 101540194 G A ANKRD46 Missense_Mutation p.R117C 0.31 deleterious(0.04) benign(0) TCGA-63-A5MI-01 8 11970486 11970486 T C ZNF705D Missense_Mutation p.F241S 0.30 tolerated(1) benign(0.039) TCGA-63-A5MI-01 8 12957808 12957808 G T DLC1 Missense_Mutation p.H680N 0.46 tolerated(0.33) benign(0.004) TCGA-63-A5MI-01 8 133764220 133764220 C G TMEM71 Missense_Mutation p.G42A 0.21 deleterious(0.03) possibly_damaging(0.894) TCGA-63-A5MI-01 8 143957257 143957257 G C CYP11B1 Missense_Mutation p.A331G 0.42 tolerated(0.1) probably_damaging(0.955) TCGA-63-A5MI-01 8 143961138 143961138 A T CYP11B1 Missense_Mutation p.V31D 0.13 deleterious(0.05) benign(0.012) TCGA-63-A5MI-01 8 37699859 37699859 G A GPR124 Missense_Mutation p.E1335K 0.16 deleterious(0) probably_damaging(0.997) TCGA-63-A5MI-01 8 39463873 39463873 C T ADAM18 Silent p.L60L 0.17 TCGA-63-A5MI-01 8 59404134 59404134 C A CYP7A1 Missense_Mutation p.G472V 0.41 tolerated(0.24) benign(0.002) TCGA-63-A5MI-01 8 86244741 86244741 G T CA1 Missense_Mutation p.A164D 0.21 deleterious(0.02) probably_damaging(0.995) TCGA-63-A5MI-01 9 100405529 100405529 G C NCBP1 Missense_Mutation p.V90L 0.25 tolerated(0.06) possibly_damaging(0.795) TCGA-63-A5MI-01 9 100895337 100895337 C T CORO2A Missense_Mutation p.A211T 0.11 tolerated(0.57) benign(0.002) TCGA-63-A5MI-01 9 107331656 107331656 G A OR13C8 Missense_Mutation p.D70N 0.16 deleterious(0) probably_damaging(0.998) TCGA-63-A5MI-01 9 113194288 113194288 C G SVEP1 Missense_Mutation p.D1754H 0.19 probably_damaging(1) TCGA-63-A5MI-01 9 140395169 140395169 C G PNPLA7 Silent p.L577L 0.26 TCGA-63-A5MI-01 9 35706813 35706813 G A TLN1 Silent p.L1680L 0.20 TCGA-63-A5MI-01 9 73461477 73461477 C T TRPM3 Missense_Mutation p.D165N 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-63-A5MI-01 X 117577614 117577614 A T WDR44 Missense_Mutation p.R826W 0.65 deleterious(0) probably_damaging(0.977) TCGA-63-A5MI-01 X 138811100 138811100 T C ATP11C 3'UTR 0.17 TCGA-63-A5MI-01 X 151996350 151996350 A C CETN2 3'UTR 0.52 TCGA-63-A5MI-01 X 36122779 36122779 G T CHDC2 Missense_Mutation p.R339L 0.54 deleterious(0) probably_damaging(1) TCGA-63-A5MI-01 X 78216281 78216281 C A P2RY10 Silent p.P88P 0.40 TCGA-63-A5MI-01 X 78216282 78216282 C T P2RY10 Missense_Mutation p.L89F 0.40 deleterious(0.01) benign(0.022) TCGA-63-A5MJ-01 10 108521408 108521408 A T SORCS1 Silent p.S299S 0.26 TCGA-63-A5MJ-01 10 135012512 135012512 A T KNDC1 Missense_Mutation p.S834C 0.19 deleterious(0.04) possibly_damaging(0.72) TCGA-63-A5MJ-01 10 25886731 25886731 G T GPR158 Nonsense_Mutation p.E726* 0.16 TCGA-63-A5MJ-01 10 29747245 29747245 C T SVIL Silent p.T2192T 0.14 TCGA-63-A5MJ-01 10 69881928 69881928 G A MYPN Missense_Mutation p.A245T 0.12 tolerated(0.62) benign(0.002) TCGA-63-A5MJ-01 10 84738857 84738857 G T NRG3 Missense_Mutation p.D522Y 0.10 deleterious(0) possibly_damaging(0.809) TCGA-63-A5MJ-01 10 93784678 93784678 T C BTAF1 Silent p.L1677L 0.32 TCGA-63-A5MJ-01 10 95718859 95718859 A G PIPSL RNA 0.17 TCGA-63-A5MJ-01 11 103780477 103780477 T A PDGFD Missense_Mutation p.Q353L 0.37 tolerated(0.66) probably_damaging(0.999) TCGA-63-A5MJ-01 11 103780490 103780490 G C PDGFD Missense_Mutation p.L349V 0.36 tolerated(0.08) possibly_damaging(0.517) TCGA-63-A5MJ-01 11 113146079 113146082 ACAG - NCAM1 Frame_Shift_Del p.T900Rfs*10 0.10 TCGA-63-A5MJ-01 11 114465437 114465437 C G NXPE4 Missense_Mutation p.L15F 0.20 tolerated(0.06) benign(0.01) TCGA-63-A5MJ-01 11 120989292 120989292 C A TECTA Silent p.S356S 0.17 TCGA-63-A5MJ-01 11 123894341 123894341 G T OR10G9 Missense_Mutation p.G208C 0.17 deleterious(0.05) probably_damaging(0.971) TCGA-63-A5MJ-01 11 124135466 124135466 C A OR8G5 Silent p.T248T 0.15 TCGA-63-A5MJ-01 11 130131562 130131562 C T ZBTB44 Silent p.K69K 0.17 TCGA-63-A5MJ-01 11 20949926 20949926 G A NELL1 Missense_Mutation p.G300S 0.18 deleterious(0) probably_damaging(0.998) TCGA-63-A5MJ-01 11 22248953 22248953 G T ANO5 Missense_Mutation p.D157Y 0.31 deleterious(0) possibly_damaging(0.646) TCGA-63-A5MJ-01 11 399094 399094 G T PKP3 Missense_Mutation p.D391Y 0.31 deleterious(0) probably_damaging(0.947) TCGA-63-A5MJ-01 11 40135890 40135890 T A LRRC4C 3'UTR 0.24 TCGA-63-A5MJ-01 11 43469634 43469634 C T TTC17 Silent p.I916I 0.19 TCGA-63-A5MJ-01 11 56258622 56258622 A T OR5M8 Missense_Mutation p.N75K 0.16 deleterious(0.02) benign(0.02) TCGA-63-A5MJ-01 11 57003912 57003912 G T APLNR Silent p.A189A 0.28 TCGA-63-A5MJ-01 11 59419991 59419991 G A PATL1 Missense_Mutation p.R458C 0.40 tolerated(0.16) benign(0.022) TCGA-63-A5MJ-01 11 64715265 64715265 C A C11orf85 Missense_Mutation p.G126W 0.15 deleterious(0.02) probably_damaging(0.991) TCGA-63-A5MJ-01 11 7818148 7818148 C A OR5P2 Missense_Mutation p.M114I 0.35 deleterious(0.01) probably_damaging(1) TCGA-63-A5MJ-01 12 103981229 103981229 C T STAB2 5'UTR 0.24 TCGA-63-A5MJ-01 12 125397538 125397538 G A UBC Silent p.D260D 0.09 TCGA-63-A5MJ-01 12 130184635 130184635 C A TMEM132D Missense_Mutation p.V230L 0.23 tolerated(0.45) benign(0.015) TCGA-63-A5MJ-01 12 21711230 21711230 T C GYS2 Silent p.P442P 0.25 TCGA-63-A5MJ-01 12 40728858 40728858 A TC LRRK2 Frame_Shift_Ins p.L1949Ffs*20 0.11 TCGA-63-A5MJ-01 12 443536 443536 G C KDM5A Missense_Mutation p.S454C 0.17 deleterious(0.02) probably_damaging(0.942) TCGA-63-A5MJ-01 12 69746080 69746080 T C LYZ Splice_Site p.X127_splice 0.19 TCGA-63-A5MJ-01 12 80749592 80749592 C G OTOGL Nonsense_Mutation p.Y1881* 0.14 TCGA-63-A5MJ-01 12 99837452 99837452 T A ANKS1B Missense_Mutation p.Q525L 0.23 tolerated(0.12) possibly_damaging(0.821) TCGA-63-A5MJ-01 13 52676110 52676110 G T NEK5 Missense_Mutation p.A284E 0.54 tolerated(0.56) benign(0.01) TCGA-63-A5MJ-01 14 104026313 104026313 G A BAG5 Missense_Mutation p.R438W 0.26 tolerated(0.22) benign(0.019) TCGA-63-A5MJ-01 14 106173748 106173748 G A IGHA1 Silent p.R273R 0.18 TCGA-63-A5MJ-01 14 22386640 22386640 G T TRAV13-2 Splice_Site p.X17_splice 0.13 TCGA-63-A5MJ-01 14 24664186 24664186 A G TM9SF1 Missense_Mutation p.W14R 0.47 tolerated(0.27) benign(0.088) TCGA-63-A5MJ-01 14 38678689 38678689 C T SSTR1 Missense_Mutation p.A32V 0.15 tolerated(0.53) unknown(0) TCGA-63-A5MJ-01 14 38724543 38724543 C T CLEC14A Missense_Mutation p.D229N 0.19 tolerated(0.21) benign(0.016) TCGA-63-A5MJ-01 14 74971759 74971759 T C LTBP2 Silent p.T1432T 0.32 TCGA-63-A5MJ-01 14 76259389 76259389 G T TTLL5 Missense_Mutation p.K1039N 0.12 deleterious(0.01) benign(0.03) TCGA-63-A5MJ-01 14 91770248 91770248 C T CCDC88C Silent p.T1144T 0.23 TCGA-63-A5MJ-01 14 94756239 94756239 A G SERPINA10 Missense_Mutation p.I231T 0.33 deleterious(0) possibly_damaging(0.839) TCGA-63-A5MJ-01 14 96954740 96954740 G A AK7 3'UTR 0.10 TCGA-63-A5MJ-01 15 20488822 20488822 G C CHEK2P2 RNA 0.18 TCGA-63-A5MJ-01 15 23890928 23890928 G T MAGEL2 Silent p.P51P 0.22 TCGA-63-A5MJ-01 15 25936859 25936859 T C ATP10A Intron 0.20 TCGA-63-A5MJ-01 15 29397651 29397651 G A APBA2 Missense_Mutation p.G532S 0.19 deleterious(0.02) probably_damaging(0.931) TCGA-63-A5MJ-01 15 43815232 43815232 A G MAP1A Missense_Mutation p.R521G 0.28 benign(0.021) TCGA-63-A5MJ-01 15 49064812 49064812 G A CEP152 Missense_Mutation p.R552C 0.45 deleterious(0.01) benign(0.135) TCGA-63-A5MJ-01 15 69561657 69561657 G A GLCE 3'UTR 0.21 TCGA-63-A5MJ-01 15 78473102 78473102 G A ACSBG1 Silent p.P416P 0.20 TCGA-63-A5MJ-01 16 2234834 2234834 C A CASKIN1 Missense_Mutation p.G454W 0.07 probably_damaging(0.958) TCGA-63-A5MJ-01 16 22358491 22358491 T C CDR2 Missense_Mutation p.K387R 0.30 tolerated(1) benign(0.004) TCGA-63-A5MJ-01 16 58030980 58030980 G C ZNF319 Missense_Mutation p.T397S 0.13 tolerated(0.43) benign(0.037) TCGA-63-A5MJ-01 16 65025669 65025669 A T CDH11 Splice_Site p.X271_splice 0.22 TCGA-63-A5MJ-01 16 77325368 77325368 G A ADAMTS18 Missense_Mutation p.A1066V 0.17 tolerated(1) benign(0.006) TCGA-63-A5MJ-01 16 784121 784121 G A NARFL Intron 0.07 TCGA-63-A5MJ-01 16 81175090 81175090 G A PKD1L2 RNA 0.14 TCGA-63-A5MJ-01 16 84778791 84778791 A G USP10 Missense_Mutation p.D235G 0.31 tolerated_low_confidence(0.61) benign(0.001) TCGA-63-A5MJ-01 17 40844515 40844515 A G CNTNAP1 Splice_Site p.X844_splice 0.34 TCGA-63-A5MJ-01 17 47121326 47121326 C A IGF2BP1 Intron 0.14 TCGA-63-A5MJ-01 17 58348787 58348787 T C USP32 Silent p.Q209Q 0.25 TCGA-63-A5MJ-01 17 59972732 59972732 G A INTS2 Missense_Mutation p.P511S 0.10 tolerated(0.15) benign(0.38) TCGA-63-A5MJ-01 17 72832237 72832237 G A TMEM104 Missense_Mutation p.R301H 0.03 deleterious(0.03) benign(0.013) TCGA-63-A5MJ-01 17 73832997 73832997 T C UNC13D Missense_Mutation p.Q353R 0.32 tolerated(0.36) benign(0.005) TCGA-63-A5MJ-01 17 7577123 7577123 A C TP53 Missense_Mutation p.V272G 0.49 deleterious(0) probably_damaging(1) TCGA-63-A5MJ-01 18 15323329 15323329 C A RNU6-721P 5'Flank 0.53 TCGA-63-A5MJ-01 18 2784578 2784578 C T SMCHD1 Missense_Mutation p.A1893V 0.14 deleterious(0.01) probably_damaging(0.971) TCGA-63-A5MJ-01 18 55998099 55998100 - TTCA NEDD4L Frame_Shift_Ins p.Q316Hfs*58 0.20 TCGA-63-A5MJ-01 19 11304272 11304272 C A KANK2 Missense_Mutation p.V162L 0.49 tolerated(0.42) benign(0.062) TCGA-63-A5MJ-01 19 13873691 13873691 G T CCDC130 Nonsense_Mutation p.G334* 0.24 TCGA-63-A5MJ-01 19 15234018 15234018 C A ILVBL Missense_Mutation p.G125V 0.09 deleterious(0) probably_damaging(1) TCGA-63-A5MJ-01 19 17186336 17186336 T A HAUS8 5'UTR 0.38 TCGA-63-A5MJ-01 19 21990356 21990356 T C ZNF43 3'UTR 0.24 TCGA-63-A5MJ-01 19 23405626 23405626 C G ZNF724P Missense_Mutation p.G474A 0.04 deleterious(0.02) probably_damaging(0.994) TCGA-63-A5MJ-01 19 30935651 30935653 CCA GCAT ZNF536 Frame_Shift_Ins p.L396Pfs*145 0.21 TCGA-63-A5MJ-01 19 33096765 33096765 G T ANKRD27 Missense_Mutation p.H823Q 0.40 tolerated(0.32) possibly_damaging(0.683) TCGA-63-A5MJ-01 19 38198890 38198890 C A ZNF607 Missense_Mutation p.D54Y 0.14 deleterious(0.05) benign(0.027) TCGA-63-A5MJ-01 19 38573669 38573669 G T SIPA1L3 Silent p.R488R 0.30 TCGA-63-A5MJ-01 19 40318011 40318011 G C DYRK1B Missense_Mutation p.L337V 0.21 tolerated(0.12) benign(0.162) TCGA-63-A5MJ-01 19 41038588 41038588 C A SPTBN4 Missense_Mutation p.D1335E 0.15 tolerated(1) benign(0.097) TCGA-63-A5MJ-01 19 41430328 41430328 C A CYP2B7P RNA 0.12 TCGA-63-A5MJ-01 19 46893548 46893548 C T PPP5C Missense_Mutation p.P482L 0.21 deleterious(0) possibly_damaging(0.806) TCGA-63-A5MJ-01 19 48908130 48908130 C T GRIN2D Missense_Mutation p.S202F 0.14 deleterious(0) probably_damaging(0.942) TCGA-63-A5MJ-01 19 51768698 51768698 C A SIGLECL1 Silent p.P33P 0.15 TCGA-63-A5MJ-01 19 53612150 53612150 G A ZNF415 Missense_Mutation p.P383L 0.12 tolerated(0.06) probably_damaging(1) TCGA-63-A5MJ-01 19 54745591 54745591 G T LILRA6 Missense_Mutation p.H173Q 0.26 deleterious(0.04) benign(0.118) TCGA-63-A5MJ-01 19 56243484 56243484 A G NLRP9 Silent p.Y571Y 0.32 TCGA-63-A5MJ-01 19 57176172 57176172 T C ZNF835 Missense_Mutation p.H132R 0.14 deleterious(0) probably_damaging(0.999) TCGA-63-A5MJ-01 19 57647285 57647285 A T ZIM3 Nonsense_Mutation p.Y140* 0.29 TCGA-63-A5MJ-01 19 58083826 58083826 A C ZNF416 Silent p.V482V 0.07 TCGA-63-A5MJ-01 19 58099933 58099933 C T ZIK1 Silent p.A33A 0.13 TCGA-63-A5MJ-01 19 7122935 7122935 G A INSR Silent p.H1108H 0.34 TCGA-63-A5MJ-01 19 8996427 8996427 G C MUC16 Missense_Mutation p.S13715R 0.14 probably_damaging(0.993) TCGA-63-A5MJ-01 1 10355160 10355160 A T KIF1B Missense_Mutation p.N490I 0.23 deleterious(0) probably_damaging(0.997) TCGA-63-A5MJ-01 1 145584212 145584212 T G PIAS3 Missense_Mutation p.S455A 0.14 deleterious(0.03) probably_damaging(0.977) TCGA-63-A5MJ-01 1 151665037 151665037 T G SNX27 Missense_Mutation p.C456G 0.53 deleterious(0.01) probably_damaging(0.997) TCGA-63-A5MJ-01 1 160143467 160143467 G A ATP1A4 Missense_Mutation p.A651T 0.07 deleterious(0.03) benign(0.106) TCGA-63-A5MJ-01 1 164761867 164761867 G A PBX1 Silent p.A134A 0.15 TCGA-63-A5MJ-01 1 167095401 167095401 G A DUSP27 Missense_Mutation p.E345K 0.52 deleterious(0) benign(0.242) TCGA-63-A5MJ-01 1 172569230 172569230 G T SUCO Missense_Mutation p.Q980H 0.27 tolerated(0.06) benign(0.048) TCGA-63-A5MJ-01 1 183515297 183515297 C T SMG7 Missense_Mutation p.P810L 0.41 deleterious_low_confidence(0) possibly_damaging(0.758) TCGA-63-A5MJ-01 1 190195383 190195383 C T BRINP3 Missense_Mutation p.A264T 0.24 tolerated(0.59) benign(0.081) TCGA-63-A5MJ-01 1 19525405 19525405 T A UBR4 Silent p.L132L 0.27 TCGA-63-A5MJ-01 1 201333497 201333497 G A TNNT2 Missense_Mutation p.R130C 0.15 deleterious(0.01) probably_damaging(0.955) TCGA-63-A5MJ-01 1 226127545 226127545 C A LEFTY2 Silent p.L136L 0.59 TCGA-63-A5MJ-01 1 227935705 227935705 G T SNAP47 Missense_Mutation p.V135F 0.39 deleterious(0) probably_damaging(0.982) TCGA-63-A5MJ-01 1 235344910 235344910 A G ARID4B Silent p.H1108H 0.32 TCGA-63-A5MJ-01 1 237586417 237586417 G T RYR2 Nonsense_Mutation p.G292* 0.32 TCGA-63-A5MJ-01 1 237765413 237765413 T A RYR2 Splice_Site p.X1561_splice 0.30 TCGA-63-A5MJ-01 1 243328257 243328257 C A CEP170 Missense_Mutation p.R1002I 0.08 deleterious(0) probably_damaging(0.998) TCGA-63-A5MJ-01 1 24449813 24449813 C A IL22RA1 Silent p.P257P 0.35 TCGA-63-A5MJ-01 1 24449834 24449834 G C IL22RA1 Missense_Mutation p.S250R 0.41 deleterious(0.03) possibly_damaging(0.766) TCGA-63-A5MJ-01 1 245775202 245775202 C T KIF26B Silent p.D674D 0.14 TCGA-63-A5MJ-01 1 247875636 247875636 G T OR6F1 Nonsense_Mutation p.S141* 0.24 TCGA-63-A5MJ-01 1 248039219 248039219 C T TRIM58 Missense_Mutation p.P297S 0.20 deleterious(0) probably_damaging(0.999) TCGA-63-A5MJ-01 1 248039222 248039222 G T TRIM58 Missense_Mutation p.A298S 0.21 tolerated(0.69) benign(0.109) TCGA-63-A5MJ-01 1 248458056 248458056 G T OR2T12 Missense_Mutation p.F275L 0.25 deleterious(0.01) possibly_damaging(0.841) TCGA-63-A5MJ-01 1 248637253 248637253 A G OR2T3 Missense_Mutation p.K201R 0.21 deleterious(0.01) benign(0.016) TCGA-63-A5MJ-01 1 27088681 27088682 - C ARID1A Frame_Shift_Ins p.Q766Pfs*51 0.34 TCGA-63-A5MJ-01 1 35847334 35847334 C T ZMYM4 Missense_Mutation p.S515L 0.46 tolerated(0.29) probably_damaging(0.94) TCGA-63-A5MJ-01 20 18296966 18296966 G A ZNF133 Missense_Mutation p.E490K 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-63-A5MJ-01 20 32207383 32207383 C A CBFA2T2 Missense_Mutation p.L170I 0.25 deleterious(0) probably_damaging(0.971) TCGA-63-A5MJ-01 20 36766609 36766609 G T TGM2 Silent p.L507L 0.19 TCGA-63-A5MJ-01 20 54824380 54824380 G T MC3R Missense_Mutation p.A161S 0.33 tolerated(0.13) probably_damaging(0.947) TCGA-63-A5MJ-01 20 57569870 57569870 A G NELFCD 3'UTR 0.48 TCGA-63-A5MJ-01 20 5974150 5974150 A C MCM8 Splice_Site p.X747_splice 0.34 TCGA-63-A5MJ-01 20 60791139 60791139 G A HRH3 Missense_Mutation p.R421W 0.29 deleterious(0) probably_damaging(0.96) TCGA-63-A5MJ-01 20 60791968 60791968 G T HRH3 Silent p.A144A 0.25 TCGA-63-A5MJ-01 20 61445150 61445150 A G OGFR 3'UTR 0.39 TCGA-63-A5MJ-01 21 18966547 18966547 G A BTG3 Missense_Mutation p.P252L 0.37 tolerated(0.3) benign(0.041) TCGA-63-A5MJ-01 22 24620994 24620994 G A GGT5 Silent p.G529G 0.11 TCGA-63-A5MJ-01 2 132110624 132110624 C A AC073869.2 RNA 0.24 TCGA-63-A5MJ-01 2 135223777 135223777 A G TMEM163 Missense_Mutation p.V192A 0.35 deleterious(0) possibly_damaging(0.717) TCGA-63-A5MJ-01 2 152408282 152408282 C T NEB Silent p.R6638R 0.13 TCGA-63-A5MJ-01 2 152411556 152411556 G T NEB Silent p.I6439I 0.29 TCGA-63-A5MJ-01 2 159519838 159519838 A T PKP4 Missense_Mutation p.M820L 0.31 tolerated(0.59) benign(0.006) TCGA-63-A5MJ-01 2 160673496 160673496 A G LY75-CD302 Missense_Mutation p.Y1401H 0.28 tolerated(0.26) probably_damaging(0.986) TCGA-63-A5MJ-01 2 163292024 163292024 T G KCNH7 Missense_Mutation p.E546D 0.33 deleterious(0) probably_damaging(0.997) TCGA-63-A5MJ-01 2 1664770 1664770 T C PXDN Missense_Mutation p.S574G 0.08 tolerated(0.07) benign(0.012) TCGA-63-A5MJ-01 2 168107309 168107309 C A XIRP2 Missense_Mutation p.P3136H 0.27 possibly_damaging(0.889) TCGA-63-A5MJ-01 2 169728004 169728004 G A SPC25 Silent p.T204T 0.18 TCGA-63-A5MJ-01 2 169792794 169792794 C T ABCB11 Silent p.R920R 0.32 TCGA-63-A5MJ-01 2 170019027 170019027 C G LRP2 Missense_Mutation p.D3948H 0.27 probably_damaging(0.997) TCGA-63-A5MJ-01 2 178098960 178098960 C A NFE2L2 Missense_Mutation p.D29Y 0.30 deleterious(0) probably_damaging(1) TCGA-63-A5MJ-01 2 179446858 179446858 C G TTN Missense_Mutation p.A22080P 0.11 TCGA-63-A5MJ-01 2 179453480 179453480 C G TTN Missense_Mutation p.G20991A 0.14 TCGA-63-A5MJ-01 2 183099217 183099217 C T PDE1A Missense_Mutation p.R136Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-63-A5MJ-01 2 185802879 185802879 G A ZNF804A Missense_Mutation p.C919Y 0.23 tolerated(1) benign(0) TCGA-63-A5MJ-01 2 1915876 1915876 G A MYT1L Missense_Mutation p.A540V 0.14 deleterious(0) probably_damaging(0.925) TCGA-63-A5MJ-01 2 219249897 219249897 G A SLC11A1 Missense_Mutation p.V101M 0.49 deleterious(0.03) possibly_damaging(0.889) TCGA-63-A5MJ-01 2 40657237 40657237 G C SLC8A1 Missense_Mutation p.P62A 0.43 deleterious(0) probably_damaging(0.967) TCGA-63-A5MJ-01 2 5833242 5833242 C A SOX11 Missense_Mutation p.A130D 0.47 deleterious(0) probably_damaging(0.92) TCGA-63-A5MJ-01 2 71883373 71883373 A G DYSF Missense_Mutation p.K1570E 0.23 deleterious(0.02) possibly_damaging(0.834) TCGA-63-A5MJ-01 2 73900104 73900104 G A ALMS1P RNA 0.17 TCGA-63-A5MJ-01 2 74274667 74274667 A G TET3 Silent p.E406E 0.14 TCGA-63-A5MJ-01 2 74755100 74755100 T C AUP1 Silent p.E235E 0.41 TCGA-63-A5MJ-01 2 75105925 75105925 G T HK2 Missense_Mutation p.R381L 0.26 deleterious(0) probably_damaging(0.953) TCGA-63-A5MJ-01 2 75118038 75118038 C G HK2 Silent p.A908A 0.24 TCGA-63-A5MJ-01 2 77745482 77745482 G T LRRTM4 Missense_Mutation p.P505T 0.19 tolerated(0.16) possibly_damaging(0.907) TCGA-63-A5MJ-01 2 90121983 90121983 G A IGKV1D-17 Silent p.K67K 0.28 TCGA-63-A5MJ-01 2 90212033 90212033 C A IGKV3D-11 Missense_Mutation p.S42Y 0.25 deleterious(0.01) probably_damaging(0.954) TCGA-63-A5MJ-01 3 10370483 10370483 C T ATP2B2 3'UTR 0.19 TCGA-63-A5MJ-01 3 113138930 113138930 C A WDR52 Silent p.L168L 0.46 TCGA-63-A5MJ-01 3 121414689 121414689 C T GOLGB1 Missense_Mutation p.D1561N 0.17 probably_damaging(0.919) TCGA-63-A5MJ-01 3 187447683 187447683 C T BCL6 Silent p.R170R 0.13 TCGA-63-A5MJ-01 3 190936644 190936644 C A OSTN Missense_Mutation p.L71I 0.68 deleterious(0.01) probably_damaging(0.998) TCGA-63-A5MJ-01 3 52237941 52237941 A C ALAS1 Missense_Mutation p.S164R 0.53 tolerated(0.25) benign(0.002) TCGA-63-A5MJ-01 3 97806778 97806778 C T OR5AC2 Silent p.Y254Y 0.10 TCGA-63-A5MJ-01 4 159825808 159825808 A G FNIP2 3'UTR 0.31 TCGA-63-A5MJ-01 4 185310156 185310156 C T IRF2 Missense_Mutation p.R269Q 0.64 tolerated(0.53) benign(0.001) TCGA-63-A5MJ-01 4 186578619 186578619 C T SORBS2 Missense_Mutation p.G176R 0.05 deleterious(0) probably_damaging(1) TCGA-63-A5MJ-01 4 187004920 187004920 T A TLR3 Missense_Mutation p.S694T 0.33 tolerated(0.48) benign(0.013) TCGA-63-A5MJ-01 4 2986314 2986314 A T GRK4 Missense_Mutation p.S43C 0.20 deleterious(0.02) possibly_damaging(0.682) TCGA-63-A5MJ-01 4 44177010 44177010 G C KCTD8 Missense_Mutation p.R407G 0.39 deleterious(0.01) probably_damaging(0.972) TCGA-63-A5MJ-01 4 47663769 47663769 G C CORIN Nonsense_Mutation p.S565* 0.33 TCGA-63-A5MJ-01 4 48494832 48494832 G T ZAR1 Missense_Mutation p.R338L 0.17 deleterious(0) probably_damaging(0.999) TCGA-63-A5MJ-01 4 52883299 52883299 T C LRRC66 Missense_Mutation p.S161G 0.39 tolerated(0.15) benign(0.033) TCGA-63-A5MJ-01 4 70080031 70080031 A G UGT2B11 Missense_Mutation p.M137T 0.14 deleterious(0.02) possibly_damaging(0.752) TCGA-63-A5MJ-01 4 73179433 73179433 G T ADAMTS3 Missense_Mutation p.T569N 0.42 deleterious(0.05) possibly_damaging(0.756) TCGA-63-A5MJ-01 4 74124062 74124062 G T ANKRD17 Silent p.G108G 0.19 TCGA-63-A5MJ-01 5 118965353 118965353 C A FAM170A 5'UTR 0.52 TCGA-63-A5MJ-01 5 140475046 140475046 G T PCDHB2 Missense_Mutation p.R224S 0.48 deleterious_low_confidence(0.02) benign(0.362) TCGA-63-A5MJ-01 5 140595387 140595387 G A PCDHB13 Silent p.P564P 0.13 TCGA-63-A5MJ-01 5 140730222 140730222 C G PCDHGB1 Missense_Mutation p.A132G 0.52 tolerated(0.14) benign(0.005) TCGA-63-A5MJ-01 5 14487767 14487767 C T TRIO Missense_Mutation p.P2344S 0.69 probably_damaging(0.999) TCGA-63-A5MJ-01 5 1494968 1494968 G A LPCAT1 Missense_Mutation p.R114W 0.57 tolerated(0.42) benign(0) TCGA-63-A5MJ-01 5 156349176 156349176 G C TIMD4 Missense_Mutation p.L316V 0.54 tolerated(0.23) benign(0.056) TCGA-63-A5MJ-01 5 161580133 161580133 C T GABRG2 Missense_Mutation p.T436I 0.30 tolerated(0.17) possibly_damaging(0.743) TCGA-63-A5MJ-01 5 24509742 24509742 T A CDH10 Missense_Mutation p.I397F 0.29 deleterious(0) probably_damaging(0.969) TCGA-63-A5MJ-01 5 35954373 35954373 C A UGT3A1 Missense_Mutation p.W501C 0.18 deleterious(0) probably_damaging(0.998) TCGA-63-A5MJ-01 5 45645341 45645341 G T HCN1 Silent p.L265L 0.28 TCGA-63-A5MJ-01 5 52386365 52386365 G T ITGA2 Missense_Mutation p.R1161I 0.06 deleterious(0) probably_damaging(0.946) TCGA-63-A5MJ-01 5 72201154 72201154 G T TNPO1 Missense_Mutation p.V872F 0.19 tolerated(0.19) benign(0.02) TCGA-63-A5MJ-01 5 76264830 76264830 G T CRHBP 3'UTR 0.50 TCGA-63-A5MJ-01 5 9224913 9224913 G A SEMA5A Silent p.L173L 0.05 TCGA-63-A5MJ-01 6 106960673 106960673 G C AIM1 Missense_Mutation p.E153Q 0.54 deleterious(0.04) possibly_damaging(0.827) TCGA-63-A5MJ-01 6 107420451 107420451 A C BEND3 Splice_Site p.X13_splice 0.32 TCGA-63-A5MJ-01 6 116441163 116441163 T A COL10A1 3'UTR 0.21 TCGA-63-A5MJ-01 6 144098465 144098465 G C PHACTR2 Missense_Mutation p.R530S 0.27 deleterious(0.01) benign(0.425) TCGA-63-A5MJ-01 6 152464765 152464765 T C SYNE1 Missense_Mutation p.K8371R 0.10 benign(0.001) TCGA-63-A5MJ-01 6 168317820 168317820 A G MLLT4 Missense_Mutation p.I866V 0.05 tolerated(0.08) benign(0.015) TCGA-63-A5MJ-01 6 28541411 28541411 C T SCAND3 Missense_Mutation p.G752D 0.18 tolerated_low_confidence(0.14) probably_damaging(0.998) TCGA-63-A5MJ-01 6 32163652 32163652 C G NOTCH4 Silent p.L1858L 0.13 TCGA-63-A5MJ-01 6 46661833 46661833 G T TDRD6 Missense_Mutation p.A1990S 0.30 tolerated(1) benign(0.001) TCGA-63-A5MJ-01 6 70866559 70866559 T G COL19A1 Intron 0.18 TCGA-63-A5MJ-01 6 90384248 90384248 G A MDN1 Silent p.P4274P 0.20 TCGA-63-A5MJ-01 7 11450906 11450906 A G THSD7A Silent p.N1242N 0.30 TCGA-63-A5MJ-01 7 114619705 114619705 G T MDFIC Missense_Mutation p.R230L 0.32 deleterious(0.02) possibly_damaging(0.74) TCGA-63-A5MJ-01 7 117067573 117067573 G A ASZ1 5'UTR 0.08 TCGA-63-A5MJ-01 7 135123070 135123070 T A CNOT4 Missense_Mutation p.S4C 0.37 deleterious(0.01) benign(0.37) TCGA-63-A5MJ-01 7 154595612 154595612 C A DPP6 Silent p.S482S 0.20 TCGA-63-A5MJ-01 7 157691377 157691377 G A PTPRN2 Silent p.T592T 0.18 TCGA-63-A5MJ-01 7 34091527 34091527 T C BMPER Missense_Mutation p.V244A 0.07 deleterious(0.03) benign(0.05) TCGA-63-A5MJ-01 7 45954448 45954448 C T IGFBP3 Missense_Mutation p.V289M 0.14 deleterious(0.03) probably_damaging(0.918) TCGA-63-A5MJ-01 7 50530953 50530953 G A DDC Silent p.D473D 0.20 TCGA-63-A5MJ-01 7 6631297 6631297 G T C7orf26 Missense_Mutation p.E71D 0.18 deleterious(0.01) benign(0.22) TCGA-63-A5MJ-01 7 78150801 78150802 CC - MAGI2 Frame_Shift_Del p.E234Gfs*21 0.27 TCGA-63-A5MJ-01 7 93065362 93065362 G A CALCR Silent p.L385L 0.38 TCGA-63-A5MJ-01 7 95115442 95115442 G C ASB4 Missense_Mutation p.E53D 0.13 tolerated(0.84) benign(0.272) TCGA-63-A5MJ-01 8 106800994 106800994 A G ZFPM2 Missense_Mutation p.E194G 0.11 tolerated(0.2) benign(0.039) TCGA-63-A5MJ-01 8 113569036 113569036 G T CSMD3 Missense_Mutation p.T1397K 0.10 tolerated(0.08) probably_damaging(0.994) TCGA-63-A5MJ-01 8 114389375 114389375 G T CSMD3 Intron 0.47 TCGA-63-A5MJ-01 8 121243856 121243856 C T COL14A1 Missense_Mutation p.T783M 0.20 tolerated(0.1) benign(0.094) TCGA-63-A5MJ-01 8 12957458 12957458 C A DLC1 Missense_Mutation p.K796N 0.51 tolerated(0.1) possibly_damaging(0.58) TCGA-63-A5MJ-01 8 139606302 139606302 G A COL22A1 Nonsense_Mutation p.Q1525* 0.47 TCGA-63-A5MJ-01 8 37706147 37706147 C - BRF2 Frame_Shift_Del p.E61Kfs*16 0.09 TCGA-63-A5MJ-01 8 38260164 38260164 C T LETM2 Splice_Site p.X321_splice 0.15 TCGA-63-A5MJ-01 8 43212047 43212047 G A POTEA RNA 0.20 TCGA-63-A5MJ-01 8 57127181 57127181 G T CHCHD7 Silent p.S28S 0.14 TCGA-63-A5MJ-01 8 61654445 61654445 G C CHD7 Missense_Mutation p.V152L 0.11 benign(0.097) TCGA-63-A5MJ-01 8 70514020 70514020 T A SULF1 Silent p.R339R 0.39 TCGA-63-A5MJ-01 8 73849774 73849774 G T KCNB2 Missense_Mutation p.Q728H 0.09 tolerated_low_confidence(0.13) possibly_damaging(0.586) TCGA-63-A5MJ-01 8 75761445 75761445 G T PI15 Missense_Mutation p.C245F 0.47 deleterious(0) probably_damaging(0.994) TCGA-63-A5MJ-01 8 77618205 77618205 C G ZFHX4 Missense_Mutation p.L628V 0.05 possibly_damaging(0.567) TCGA-63-A5MJ-01 8 82195689 82195689 T A FABP5 Silent p.T56T 0.22 TCGA-63-A5MJ-01 9 120466714 120466714 C A TLR4 5'UTR 0.20 TCGA-63-A5MJ-01 9 120476796 120476796 G A TLR4 Nonsense_Mutation p.W797* 0.13 TCGA-63-A5MJ-01 9 125582400 125582400 C A PDCL Silent p.T290T 0.13 TCGA-63-A5MJ-01 9 139282016 139282016 C A SNAPC4 Missense_Mutation p.V416F 0.10 deleterious(0) probably_damaging(1) TCGA-63-A5MJ-01 9 86928352 86928352 A C SLC28A3 Silent p.L26L 0.36 TCGA-63-A5MJ-01 9 99581818 99581818 G C ZNF782 Missense_Mutation p.H163D 0.10 tolerated(1) benign(0) TCGA-63-A5MJ-01 X 10450580 10450596 TGTTCCGCTTGGGAGAT - MID1 Frame_Shift_Del p.I313Lfs*6 0.60 TCGA-63-A5MJ-01 X 110406141 110406141 A T PAK3 Splice_Site p.X193_splice 0.63 TCGA-63-A5MJ-01 X 153069192 153069192 T A PDZD4 Silent p.R642R 0.67 TCGA-63-A5MJ-01 X 155003724 155003724 G - SPRY3 Frame_Shift_Del p.R64Pfs*16 0.34 TCGA-63-A5MJ-01 X 39934054 39934054 T C BCOR Missense_Mutation p.N182S 0.62 tolerated(0.1) benign(0.145) TCGA-63-A5MJ-01 X 48244827 48244827 G A SSX4 Missense_Mutation p.S73N 0.32 tolerated(1) benign(0.001) TCGA-63-A5ML-01 10 118030494 118030494 G T GFRA1 Silent p.T58T 0.31 TCGA-63-A5ML-01 10 129881143 129881144 - T PTPRE Frame_Shift_Ins p.S694Ffs*2 0.17 TCGA-63-A5ML-01 10 129914249 129914249 C T MKI67 Silent p.K141K 0.27 TCGA-63-A5ML-01 10 25887048 25887048 C G GPR158 Silent p.S831S 0.30 TCGA-63-A5ML-01 10 26443696 26443696 C A MYO3A Missense_Mutation p.R913S 0.27 tolerated(0.37) benign(0.012) TCGA-63-A5ML-01 10 37441009 37441009 C A ANKRD30A Missense_Mutation p.S500Y 0.25 deleterious(0) possibly_damaging(0.831) TCGA-63-A5ML-01 10 48388017 48388017 G T RBP3 Missense_Mutation p.S954Y 0.25 deleterious(0.04) possibly_damaging(0.608) TCGA-63-A5ML-01 10 48388759 48388759 C T RBP3 Missense_Mutation p.E707K 0.26 tolerated(0.08) benign(0.305) TCGA-63-A5ML-01 10 51827697 51827697 G T FAM21A 5'Flank 0.64 TCGA-63-A5ML-01 10 55913012 55913012 G C PCDH15 Missense_Mutation p.I544M 0.50 deleterious(0.04) probably_damaging(0.994) TCGA-63-A5ML-01 10 5790990 5790990 C T FAM208B Missense_Mutation p.S1869L 0.30 tolerated(0.44) benign(0.001) TCGA-63-A5ML-01 10 73511497 73511497 G A C10orf54 Missense_Mutation p.R276W 0.32 deleterious(0.02) benign(0.031) TCGA-63-A5ML-01 10 75530947 75530947 C A SEC24C 3'UTR 0.21 TCGA-63-A5ML-01 10 81918874 81918874 C A ANXA11 Nonsense_Mutation p.E420* 0.25 TCGA-63-A5ML-01 10 81918875 81918875 C A ANXA11 Missense_Mutation p.E419D 0.25 deleterious(0) probably_damaging(0.983) TCGA-63-A5ML-01 10 93361 93361 C T TUBB8 Missense_Mutation p.R324K 0.37 tolerated_low_confidence(1) benign(0.004) TCGA-63-A5ML-01 10 95557448 95557448 C A LGI1 Missense_Mutation p.A521E 0.30 deleterious(0.04) probably_damaging(1) TCGA-63-A5ML-01 10 98714744 98714744 G T LCOR Nonsense_Mutation p.G123* 0.27 TCGA-63-A5ML-01 11 104901226 104901226 T A CASP1 Missense_Mutation p.Y153F 0.20 deleterious(0) probably_damaging(0.999) TCGA-63-A5ML-01 11 108380932 108380932 T G EXPH5 Missense_Mutation p.S1768R 0.18 tolerated(0.59) benign(0.048) TCGA-63-A5ML-01 11 118279784 118279784 A T ATP5L Nonsense_Mutation p.K95* 0.38 TCGA-63-A5ML-01 11 118949697 118949697 A G VPS11 Silent p.P751P 0.44 TCGA-63-A5ML-01 11 123755231 123755231 T C TMEM225 Missense_Mutation p.I98M 0.49 tolerated(0.13) benign(0.07) TCGA-63-A5ML-01 11 125867166 125867166 C A CDON Missense_Mutation p.W766C 0.32 deleterious(0) probably_damaging(0.998) TCGA-63-A5ML-01 11 134130953 134130953 C T ACAD8 Nonsense_Mutation p.Q241* 0.25 TCGA-63-A5ML-01 11 17097163 17097163 G T RPS13 Silent p.I53I 0.68 TCGA-63-A5ML-01 11 18332395 18332395 G T HPS5 Silent p.R124R 0.77 TCGA-63-A5ML-01 11 26664879 26664879 T C ANO3 Missense_Mutation p.I809T 0.76 deleterious(0) probably_damaging(0.999) TCGA-63-A5ML-01 11 4944950 4944950 C G OR51G1 Missense_Mutation p.C207S 0.68 tolerated(0.44) benign(0.007) TCGA-63-A5ML-01 11 5254308 5254308 C T HBD Silent p.V110V 0.60 TCGA-63-A5ML-01 11 55944540 55944540 G T OR5J2 Missense_Mutation p.W149C 0.37 tolerated(0.12) benign(0) TCGA-63-A5ML-01 11 57100233 57100234 CA T SSRP1 Frame_Shift_Del p.G212Vfs*45 0.14 TCGA-63-A5ML-01 11 57971651 57971651 C A OR1S2 Translation_Start_Site p.M1? 0.45 tolerated_low_confidence(0.3) benign(0) TCGA-63-A5ML-01 11 59829996 59829996 C T MS4A3 Missense_Mutation p.S71F 0.38 tolerated(0.22) probably_damaging(0.969) TCGA-63-A5ML-01 11 60183485 60183485 T A MS4A14 Silent p.S381S 0.41 TCGA-63-A5ML-01 11 6519590 6519590 G C DNHD1 Missense_Mutation p.V49L 0.70 benign(0.02) TCGA-63-A5ML-01 11 71821606 71821606 C T ANAPC15 Missense_Mutation p.G55D 0.27 deleterious(0) probably_damaging(0.999) TCGA-63-A5ML-01 11 76751082 76751082 G A B3GNT6 Missense_Mutation p.E163K 0.50 tolerated(0.78) benign(0.202) TCGA-63-A5ML-01 11 82876766 82876767 - T PCF11 Frame_Shift_Ins p.E277* 0.25 TCGA-63-A5ML-01 11 92881896 92881896 G A SLC36A4 Missense_Mutation p.S441L 0.35 deleterious(0.02) benign(0.254) TCGA-63-A5ML-01 11 9598782 9598782 T C WEE1 Silent p.H371H 0.74 TCGA-63-A5ML-01 12 11174310 11174310 T C TAS2R19 Silent p.K287K 0.23 TCGA-63-A5ML-01 12 113379379 113379379 G T OAS3 Missense_Mutation p.G61V 0.15 deleterious(0) probably_damaging(0.999) TCGA-63-A5ML-01 12 132685708 132685708 C T GALNT9 Silent p.P88P 0.34 TCGA-63-A5ML-01 12 31814835 31814835 A T METTL20 5'UTR 0.55 TCGA-63-A5ML-01 12 40716262 40716262 A G LRRK2 Missense_Mutation p.E1820G 0.25 deleterious(0.01) possibly_damaging(0.529) TCGA-63-A5ML-01 12 4758321 4758321 T C NDUFA9 Missense_Mutation p.V10A 0.50 tolerated(0.18) benign(0.004) TCGA-63-A5ML-01 12 52284461 52284461 G T ANKRD33 Missense_Mutation p.R244L 0.47 deleterious(0.05) probably_damaging(0.94) TCGA-63-A5ML-01 12 52843274 52843274 A T KRT6B Silent p.A352A 0.26 TCGA-63-A5ML-01 12 54369155 54369155 C A HOXC11 Missense_Mutation p.S291R 0.23 deleterious(0) probably_damaging(0.996) TCGA-63-A5ML-01 12 57588350 57588350 C T LRP1 Intron 0.25 TCGA-63-A5ML-01 12 62777760 62777760 C T USP15 Missense_Mutation p.A410V 0.19 deleterious(0) possibly_damaging(0.796) TCGA-63-A5ML-01 12 6627037 6627037 G A NCAPD2 Missense_Mutation p.E501K 0.10 deleterious(0.03) benign(0.141) TCGA-63-A5ML-01 12 76791638 76791638 C A OSBPL8 Missense_Mutation p.V170L 0.21 deleterious(0.01) probably_damaging(0.924) TCGA-63-A5ML-01 12 80190723 80190723 T C PPP1R12A Missense_Mutation p.Q767R 0.08 tolerated(1) benign(0.075) TCGA-63-A5ML-01 12 8757938 8757938 C A AICDA Silent p.G100G 0.26 TCGA-63-A5ML-01 12 9303332 9303332 T C PZP Missense_Mutation p.Q1431R 0.22 deleterious(0.04) probably_damaging(0.956) TCGA-63-A5ML-01 13 108862463 108862463 C G LIG4 Missense_Mutation p.R385T 0.77 deleterious(0) probably_damaging(1) TCGA-63-A5ML-01 13 19997230 19997230 G A TPTE2 Missense_Mutation p.A514V 0.66 deleterious(0) probably_damaging(0.968) TCGA-63-A5ML-01 13 27679929 27679929 C T USP12 Silent p.Q94Q 0.09 TCGA-63-A5ML-01 13 31495937 31495937 C A MEDAG Silent p.I247I 0.69 TCGA-63-A5ML-01 13 32977086 32977086 C G N4BP2L1 Missense_Mutation p.G242A 0.14 deleterious_low_confidence(0.03) probably_damaging(0.997) TCGA-63-A5ML-01 13 39262240 39262240 G T FREM2 Silent p.L253L 0.67 TCGA-63-A5ML-01 14 20249150 20249150 C A OR4M1 Silent p.A223A 0.67 TCGA-63-A5ML-01 14 20612676 20612676 C G OR4N5 Missense_Mutation p.P261R 0.72 deleterious(0) probably_damaging(0.988) TCGA-63-A5ML-01 14 24601628 24601628 G C FITM1 Missense_Mutation p.G159R 0.61 deleterious(0.04) probably_damaging(0.979) TCGA-63-A5ML-01 14 89042252 89042252 A G ZC3H14 Missense_Mutation p.E364G 0.77 deleterious(0) probably_damaging(0.984) TCGA-63-A5ML-01 15 22705896 22705896 C - AC116165.1 3'Flank 0.12 TCGA-63-A5ML-01 15 25219528 25219528 C A SNRPN 5'UTR 0.76 TCGA-63-A5ML-01 15 26806199 26806199 G T GABRB3 Silent p.A320A 0.08 TCGA-63-A5ML-01 15 45394058 45394058 C A DUOX2 Silent p.L928L 0.10 TCGA-63-A5ML-01 15 48444452 48444452 C A MYEF2 Nonsense_Mutation p.G373* 0.09 TCGA-63-A5ML-01 15 51758442 51758442 C T DMXL2 Missense_Mutation p.E2487K 0.58 tolerated(0.08) benign(0.182) TCGA-63-A5ML-01 15 53049881 53049881 C A ONECUT1 Silent p.G423G 0.41 TCGA-63-A5ML-01 15 54626022 54626022 C G UNC13C Missense_Mutation p.L1518V 0.40 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-63-A5ML-01 15 69320767 69320767 G T NOX5 Intron 0.35 TCGA-63-A5ML-01 15 82336006 82336006 G A MEX3B Missense_Mutation p.S402L 0.07 tolerated(0.08) benign(0.009) TCGA-63-A5ML-01 16 101625 101625 T C POLR3K Silent p.P44P 0.37 TCGA-63-A5ML-01 16 18812831 18812831 A T ARL6IP1 5'UTR 0.67 TCGA-63-A5ML-01 16 24105549 24105549 G A PRKCB Missense_Mutation p.S251N 0.40 deleterious(0.04) benign(0.078) TCGA-63-A5ML-01 16 27510043 27510043 C T GTF3C1 Silent p.V691V 0.16 TCGA-63-A5ML-01 16 29989674 29989674 G T TAOK2 Missense_Mutation p.W102C 0.31 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-63-A5ML-01 16 46931575 46931575 T C GPT2 Missense_Mutation p.F87L 0.75 deleterious(0) probably_damaging(0.999) TCGA-63-A5ML-01 16 48141286 48141286 T A ABCC12 Missense_Mutation p.S808C 0.71 tolerated(0.1) benign(0.118) TCGA-63-A5ML-01 16 48204822 48204822 T G ABCC11 Missense_Mutation p.E1252A 0.07 deleterious(0) possibly_damaging(0.902) TCGA-63-A5ML-01 16 50118103 50118103 G A HEATR3 Missense_Mutation p.M397I 0.13 tolerated(0.23) benign(0.002) TCGA-63-A5ML-01 16 51173598 51173598 G T SALL1 Missense_Mutation p.D845E 0.72 tolerated(0.33) possibly_damaging(0.809) TCGA-63-A5ML-01 16 68021341 68021341 A G DPEP2 3'UTR 0.33 TCGA-63-A5ML-01 16 69681419 69681419 G T NFAT5 Missense_Mutation p.A248S 0.68 probably_damaging(0.993) TCGA-63-A5ML-01 16 82660711 82660711 C T CDH13 Missense_Mutation p.L17F 0.69 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-63-A5ML-01 16 87636658 87636658 C T JPH3 5'UTR 0.67 TCGA-63-A5ML-01 17 10352082 10352082 G T MYH4 Missense_Mutation p.Q1462K 0.42 deleterious(0.01) benign(0.256) TCGA-63-A5ML-01 17 18025319 18025319 G A MYO15A Missense_Mutation p.D1069N 0.22 unknown(0) TCGA-63-A5ML-01 17 20319837 20319837 G T SRP68P3 RNA 0.32 TCGA-63-A5ML-01 17 21319155 21319155 C T KCNJ12 Silent p.I167I 0.07 TCGA-63-A5ML-01 17 21731036 21731036 C A UBBP4 Missense_Mutation p.P113H 0.36 deleterious(0) probably_damaging(0.987) TCGA-63-A5ML-01 17 29062087 29062087 C T CTD-2349P21.5 3'Flank 0.33 TCGA-63-A5ML-01 17 2911329 2911329 G T RAP1GAP2 Missense_Mutation p.D462Y 0.42 deleterious(0) probably_damaging(0.969) TCGA-63-A5ML-01 17 35310518 35310518 G T AATF Missense_Mutation p.D206Y 0.38 deleterious(0) possibly_damaging(0.806) TCGA-63-A5ML-01 17 35581954 35581954 T C ACACA Missense_Mutation p.I1145V 0.49 tolerated(1) benign(0.076) TCGA-63-A5ML-01 17 39673070 39673072 TTC - KRT15 In_Frame_Del p.K242del 0.48 TCGA-63-A5ML-01 17 40932807 40932807 G A WNK4 Missense_Mutation p.A31T 0.27 tolerated_low_confidence(0.26) unknown(0) TCGA-63-A5ML-01 17 41605998 41605998 G A ETV4 Silent p.V448V 0.55 TCGA-63-A5ML-01 17 48551902 48551902 C G ACSF2 Missense_Mutation p.L613V 0.36 deleterious(0) probably_damaging(0.999) TCGA-63-A5ML-01 17 62007555 62007555 A G CD79B Silent p.S104S 0.15 TCGA-63-A5ML-01 17 7577574 7577574 T C TP53 Missense_Mutation p.Y236C 0.39 deleterious(0) probably_damaging(0.996) TCGA-63-A5ML-01 17 7579406 7579406 G T TP53 Nonsense_Mutation p.S94* 0.38 TCGA-63-A5ML-01 17 78210871 78210871 A T SLC26A11 Missense_Mutation p.N294I 0.78 deleterious(0) probably_damaging(0.99) TCGA-63-A5ML-01 18 13666711 13666711 A G FAM210A Missense_Mutation p.I196T 0.37 deleterious(0) probably_damaging(0.993) TCGA-63-A5ML-01 18 40323361 40323361 G T RIT2 3'UTR 0.19 TCGA-63-A5ML-01 18 46645275 46645275 C T DYM Missense_Mutation p.E529K 0.41 deleterious(0) probably_damaging(1) TCGA-63-A5ML-01 19 10157827 10157827 A G C3P1 RNA 0.03 TCGA-63-A5ML-01 19 10381886 10381886 C T ICAM1 Silent p.L17L 0.16 TCGA-63-A5ML-01 19 10745526 10745526 G T SLC44A2 Silent p.R306R 0.53 TCGA-63-A5ML-01 19 1257104 1257104 G C MIDN Missense_Mutation p.G414R 0.21 deleterious(0.01) probably_damaging(0.953) TCGA-63-A5ML-01 19 12638369 12638369 G A ZNF564 Nonsense_Mutation p.R185* 0.05 TCGA-63-A5ML-01 19 12951302 12951302 T A MAST1 Silent p.T42T 0.54 TCGA-63-A5ML-01 19 14273439 14273439 C T LPHN1 Missense_Mutation p.G397R 0.06 deleterious(0) probably_damaging(0.988) TCGA-63-A5ML-01 19 18377539 18377539 G C KIAA1683 Missense_Mutation p.L271V 0.21 deleterious(0.02) possibly_damaging(0.723) TCGA-63-A5ML-01 19 18893873 18893873 G T COMP Missense_Mutation p.R740S 0.49 tolerated(0.06) probably_damaging(0.997) TCGA-63-A5ML-01 19 19312762 19312763 - G NR2C2AP Frame_Shift_Ins p.H131Pfs*54 0.17 TCGA-63-A5ML-01 19 19459978 19459978 G A MAU2 Missense_Mutation p.R458Q 0.32 tolerated(0.14) benign(0.421) TCGA-63-A5ML-01 19 2117223 2117223 T G AP3D1 Missense_Mutation p.E619D 0.51 tolerated(0.16) benign(0.061) TCGA-63-A5ML-01 19 21910607 21910607 C T ZNF100 Silent p.L169L 0.12 TCGA-63-A5ML-01 19 21948534 21948534 C A ZNF100 Missense_Mutation p.A20S 0.26 tolerated_low_confidence(0.31) benign(0.002) TCGA-63-A5ML-01 19 29698676 29698676 G C UQCRFS1 Missense_Mutation p.L202V 0.04 tolerated(0.28) benign(0.061) TCGA-63-A5ML-01 19 36322657 36322657 C T NPHS1 Silent p.S1058S 0.29 TCGA-63-A5ML-01 19 36365512 36365512 G A APLP1 Missense_Mutation p.R388H 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-63-A5ML-01 19 39734326 39734326 G T IFNL3 Missense_Mutation p.F179L 0.84 tolerated(0.08) benign(0.148) TCGA-63-A5ML-01 19 4433478 4433478 A T CHAF1A Missense_Mutation p.K872M 0.21 deleterious(0) probably_damaging(0.993) TCGA-63-A5ML-01 19 44341264 44341264 G T ZNF283 Silent p.L90L 0.31 TCGA-63-A5ML-01 19 44351110 44351110 T A ZNF283 Nonsense_Mutation p.Y119* 0.50 TCGA-63-A5ML-01 19 45728156 45728156 G A EXOC3L2 Silent p.R140R 0.25 TCGA-63-A5ML-01 19 46032468 46032468 C T OPA3 Missense_Mutation p.G130E 0.25 tolerated(0.43) benign(0.012) TCGA-63-A5ML-01 19 49164921 49164921 C T NTN5 3'UTR 0.31 TCGA-63-A5ML-01 19 49339078 49339081 AACC - HSD17B14 Frame_Shift_Del p.V37Sfs*26 0.27 TCGA-63-A5ML-01 19 50794261 50794261 G A MYH14 Missense_Mutation p.G1695S 0.38 tolerated(0.27) benign(0.003) TCGA-63-A5ML-01 19 52536940 52536940 C G ZNF432 3'UTR 0.05 TCGA-63-A5ML-01 19 53959180 53959180 A T ZNF761 RNA 0.38 TCGA-63-A5ML-01 19 55501991 55501991 T C NLRP2 Missense_Mutation p.F887L 0.32 tolerated(1) benign(0.001) TCGA-63-A5ML-01 19 57175686 57175686 G T ZNF835 Missense_Mutation p.T294N 0.19 tolerated(0.05) possibly_damaging(0.716) TCGA-63-A5ML-01 19 57326712 57326712 C T PEG3 Missense_Mutation p.C1033Y 0.31 tolerated(0.71) benign(0.012) TCGA-63-A5ML-01 19 9204367 9204367 G T OR1M1 Missense_Mutation p.W149C 0.57 deleterious(0) probably_damaging(0.959) TCGA-63-A5ML-01 19 9212981 9212981 C A OR7G2 Missense_Mutation p.W334C 0.55 tolerated_low_confidence(0.22) benign(0.094) TCGA-63-A5ML-01 1 118491119 118491119 C A WDR3 Missense_Mutation p.S505Y 0.17 tolerated(1) benign(0.314) TCGA-63-A5ML-01 1 149936125 149936125 G A OTUD7B Intron 0.05 TCGA-63-A5ML-01 1 158064160 158064160 C T KIRREL Missense_Mutation p.R593W 0.29 deleterious(0) probably_damaging(0.983) TCGA-63-A5ML-01 1 160209897 160209897 C T DCAF8 Missense_Mutation p.E105K 0.44 tolerated(0.16) benign(0.004) TCGA-63-A5ML-01 1 165173174 165173174 T A LMX1A Missense_Mutation p.R364S 0.27 tolerated(0.19) benign(0.119) TCGA-63-A5ML-01 1 175331876 175331876 G C TNR Missense_Mutation p.A926G 0.38 tolerated(0.61) probably_damaging(0.94) TCGA-63-A5ML-01 1 190234186 190234186 C A BRINP3 Splice_Site p.X143_splice 0.27 TCGA-63-A5ML-01 1 202985247 202985247 C A TMEM183A Silent p.P229P 0.08 TCGA-63-A5ML-01 1 203015040 203015040 T A PPFIA4 Silent p.R17R 0.35 TCGA-63-A5ML-01 1 206319160 206319160 C T CTSE Silent p.F95F 0.06 TCGA-63-A5ML-01 1 216040347 216040347 A T USH2A Splice_Site p.X2949_splice 0.08 TCGA-63-A5ML-01 1 234582622 234582622 C T TARBP1 Silent p.K687K 0.10 TCGA-63-A5ML-01 1 240492695 240492695 T A FMN2 Missense_Mutation p.L1455Q 0.19 probably_damaging(0.995) TCGA-63-A5ML-01 1 247751844 247751844 G T OR2G2 Silent p.P61P 0.35 TCGA-63-A5ML-01 1 248616174 248616174 G T OR2T2 Missense_Mutation p.G26W 0.19 tolerated(0.22) benign(0.032) TCGA-63-A5ML-01 1 248616424 248616424 T A OR2T2 Missense_Mutation p.I109N 0.25 tolerated(0.09) benign(0.092) TCGA-63-A5ML-01 1 27680417 27680417 A C SYTL1 3'UTR 0.72 TCGA-63-A5ML-01 1 46661509 46661509 C T POMGNT1 Missense_Mutation p.G170S 0.33 probably_damaging(0.972) TCGA-63-A5ML-01 1 65309804 65309804 C T JAK1 Silent p.T782T 0.39 TCGA-63-A5ML-01 1 76259898 76259898 G T RABGGTB Missense_Mutation p.A279S 0.65 tolerated(0.9) benign(0.181) TCGA-63-A5ML-01 1 77094588 77094588 A G ST6GALNAC3 3'UTR 0.88 TCGA-63-A5ML-01 1 78546404 78546404 C G GIPC2 Missense_Mutation p.L96V 0.74 deleterious(0.01) benign(0.32) TCGA-63-A5ML-01 20 20208968 20208968 G T C20orf26 Missense_Mutation p.V670L 0.34 deleterious(0.04) probably_damaging(0.955) TCGA-63-A5ML-01 20 21494170 21494170 C A NKX2-2 Silent p.G46G 0.48 TCGA-63-A5ML-01 20 49508642 49508642 T G ADNP Missense_Mutation p.K870T 0.37 tolerated_low_confidence(0.38) benign(0.003) TCGA-63-A5ML-01 20 5294557 5294557 C G PROKR2 Splice_Site p.X153_splice 0.36 TCGA-63-A5ML-01 20 61869749 61869749 T C BIRC7 Missense_Mutation p.C151R 0.28 deleterious(0) probably_damaging(1) TCGA-63-A5ML-01 20 62078173 62078173 G A KCNQ2 Missense_Mutation p.S105F 0.23 deleterious(0) benign(0.318) TCGA-63-A5ML-01 20 8678323 8678323 C T PLCB1 Silent p.L354L 0.33 TCGA-63-A5ML-01 21 22804466 22804466 C A NCAM2 Missense_Mutation p.L507M 0.67 tolerated(0.22) possibly_damaging(0.789) TCGA-63-A5ML-01 22 16256593 16256593 G T POTEH 3'UTR 0.23 TCGA-63-A5ML-01 22 17073369 17073369 C A CCT8L2 Missense_Mutation p.R24S 0.32 tolerated(0.22) benign(0.017) TCGA-63-A5ML-01 22 31331057 31331057 G C MORC2 Missense_Mutation p.P573R 0.33 tolerated(0.09) benign(0.265) TCGA-63-A5ML-01 22 32626990 32626990 G T SLC5A4 Missense_Mutation p.A365E 0.09 deleterious(0) probably_damaging(0.973) TCGA-63-A5ML-01 22 37770696 37770696 C A ELFN2 Silent p.A293A 0.07 TCGA-63-A5ML-01 22 38484889 38484889 T C BAIAP2L2 Silent p.R328R 0.28 TCGA-63-A5ML-01 22 46704466 46704466 C T GTSE1 Missense_Mutation p.R130W 0.21 tolerated(0.2) benign(0.001) TCGA-63-A5ML-01 22 50686375 50686376 - G HDAC10 Frame_Shift_Ins p.D428* 0.09 TCGA-63-A5ML-01 2 110303810 110303810 T C SEPT10 Missense_Mutation p.Q389R 0.82 tolerated(0.07) benign(0.287) TCGA-63-A5ML-01 2 131520243 131520243 G A AMER3 Missense_Mutation p.A200T 0.75 tolerated(0.4) benign(0.093) TCGA-63-A5ML-01 2 178098945 178098945 G C NFE2L2 Missense_Mutation p.R34G 0.63 deleterious(0) probably_damaging(1) TCGA-63-A5ML-01 2 179431724 179431724 G C TTN Missense_Mutation p.L26379V 0.74 TCGA-63-A5ML-01 2 179439996 179439996 G T TTN Silent p.P23621P 0.67 TCGA-63-A5ML-01 2 203378534 203378534 G C BMPR2 Missense_Mutation p.G171R 0.78 tolerated(0.06) probably_damaging(0.994) TCGA-63-A5ML-01 2 209309559 209309559 T C PTH2R Missense_Mutation p.V267A 0.73 deleterious(0) benign(0.37) TCGA-63-A5ML-01 2 209324683 209324684 - G PTH2R Frame_Shift_Ins 0.11 TCGA-63-A5ML-01 2 212537919 212537919 C A ERBB4 Missense_Mutation p.M562I 0.71 tolerated(0.16) benign(0.002) TCGA-63-A5ML-01 2 228884590 228884590 G T SPHKAP Missense_Mutation p.A327D 0.33 tolerated(0.49) benign(0) TCGA-63-A5ML-01 2 24440864 24440864 C A ITSN2 Missense_Mutation p.A1240S 0.09 tolerated(0.68) unknown(0) TCGA-63-A5ML-01 2 264891 264891 G T ACP1 5'UTR 0.32 TCGA-63-A5ML-01 2 37458633 37458633 G C CEBPZ Missense_Mutation p.D26E 0.24 tolerated_low_confidence(0.23) benign(0.046) TCGA-63-A5ML-01 2 3750042 3750042 C - ALLC Frame_Shift_Del p.D355Efs*4 0.22 TCGA-63-A5ML-01 2 44016846 44016846 A T DYNC2LI1 Silent p.T102T 0.19 TCGA-63-A5ML-01 2 48873669 48873669 C A STON1-GTF2A1L Missense_Mutation p.Q860K 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-63-A5ML-01 2 48906480 48906480 C A STON1-GTF2A1L Silent p.R1150R 0.47 TCGA-63-A5ML-01 2 73799537 73799537 G C ALMS1 Missense_Mutation p.W3510C 0.05 probably_damaging(0.989) TCGA-63-A5ML-01 2 79253222 79253222 G T REG3G Translation_Start_Site p.M1? 0.14 deleterious(0.04) benign(0.259) TCGA-63-A5ML-01 3 107435533 107435533 G T BBX Missense_Mutation p.R81L 0.03 deleterious(0) probably_damaging(0.999) TCGA-63-A5ML-01 3 123348434 123348434 G A MYLK Silent p.N1667N 0.03 TCGA-63-A5ML-01 3 130202887 130202887 G T COL6A5 3'UTR 0.12 TCGA-63-A5ML-01 3 132068842 132068842 C A ACPP Missense_Mutation p.S287Y 0.70 deleterious(0) possibly_damaging(0.899) TCGA-63-A5ML-01 3 134670379 134670379 G A EPHB1 Missense_Mutation p.S97N 0.41 tolerated(1) benign(0.044) TCGA-63-A5ML-01 3 137742587 137742587 G C CLDN18 Missense_Mutation p.C103S 0.10 deleterious(0.04) probably_damaging(1) TCGA-63-A5ML-01 3 138376546 138376546 T A PIK3CB Silent p.T976T 0.19 TCGA-63-A5ML-01 3 142542408 142542408 C T PCOLCE2 Silent p.G305G 0.09 TCGA-63-A5ML-01 3 148596501 148596501 C T CPA3 Missense_Mutation p.S147F 0.37 deleterious(0.01) benign(0.424) TCGA-63-A5ML-01 3 154866368 154866368 G A MME Silent p.E509E 0.17 TCGA-63-A5ML-01 3 155267712 155267712 C T PLCH1 Missense_Mutation p.S397N 0.63 deleterious(0.05) possibly_damaging(0.819) TCGA-63-A5ML-01 3 160222817 160222817 G C KPNA4 Missense_Mutation p.Q466E 0.19 deleterious(0) possibly_damaging(0.489) TCGA-63-A5ML-01 3 167068207 167068207 C A ZBBX Splice_Site p.X176_splice 0.69 TCGA-63-A5ML-01 3 167762636 167762636 C T GOLIM4 Missense_Mutation p.V116I 0.09 deleterious(0.05) probably_damaging(0.985) TCGA-63-A5ML-01 3 172048460 172048460 C T FNDC3B Silent p.P503P 0.71 TCGA-63-A5ML-01 3 180327952 180327952 G A TTC14 Silent p.R645R 0.72 TCGA-63-A5ML-01 3 193855611 193855611 C G HES1 Silent p.A144A 0.06 TCGA-63-A5ML-01 3 196555228 196555228 G T PAK2 Missense_Mutation p.L509F 0.16 deleterious(0) probably_damaging(0.981) TCGA-63-A5ML-01 3 197423902 197423902 G A KIAA0226 Missense_Mutation p.A427V 0.06 tolerated(0.23) benign(0.002) TCGA-63-A5ML-01 3 24174940 24174940 C T THRB Missense_Mutation p.G251E 0.11 deleterious(0.02) possibly_damaging(0.685) TCGA-63-A5ML-01 3 38674739 38674739 G T SCN5A Silent p.S20S 0.64 TCGA-63-A5ML-01 3 97806797 97806797 T A OR5AC2 Missense_Mutation p.Y261N 0.23 deleterious(0) probably_damaging(0.996) TCGA-63-A5ML-01 4 108831708 108831708 G C SGMS2 Nonstop_Mutation p.*366Sext*14 0.29 TCGA-63-A5ML-01 4 110682787 110682787 G C CFI Missense_Mutation p.L182V 0.38 tolerated(0.14) benign(0.247) TCGA-63-A5ML-01 4 114286230 114286230 C T ANK2 Nonsense_Mutation p.R3642* 0.35 TCGA-63-A5ML-01 4 119059284 119059284 C A NDST3 Missense_Mutation p.L434I 0.38 deleterious(0) possibly_damaging(0.754) TCGA-63-A5ML-01 4 126336790 126336790 C T FAT4 Silent p.T2224T 0.34 TCGA-63-A5ML-01 4 134072878 134072878 T A PCDH10 Missense_Mutation p.L528Q 0.29 tolerated(0.3) probably_damaging(1) TCGA-63-A5ML-01 4 13604203 13604203 C A BOD1L1 Missense_Mutation p.D1441Y 0.64 possibly_damaging(0.73) TCGA-63-A5ML-01 4 151511937 151511937 T A LRBA Missense_Mutation p.N2052Y 0.32 deleterious(0.01) probably_damaging(0.987) TCGA-63-A5ML-01 4 155506688 155506688 A G FGA Splice_Site p.X631_splice 0.30 TCGA-63-A5ML-01 4 175897270 175897270 G C ADAM29 Missense_Mutation p.R198S 0.54 tolerated(0.34) benign(0.403) TCGA-63-A5ML-01 4 186180007 186180007 G T SNX25 Missense_Mutation p.D10Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-63-A5ML-01 4 656367 656367 G C PDE6B Missense_Mutation p.D598H 0.12 deleterious(0) probably_damaging(0.988) TCGA-63-A5ML-01 4 66231728 66231728 C A EPHA5 Missense_Mutation p.D658Y 0.12 deleterious(0) probably_damaging(0.993) TCGA-63-A5ML-01 4 77247150 77247150 T A CCDC158 Missense_Mutation p.N1006I 0.12 tolerated(0.44) benign(0.001) TCGA-63-A5ML-01 4 87770098 87770098 C G SLC10A6 Missense_Mutation p.K57N 0.27 deleterious(0.01) benign(0.224) TCGA-63-A5ML-01 5 140536838 140536838 C A PCDHB17 Missense_Mutation p.T421N 0.11 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-63-A5ML-01 5 140581716 140581716 G A PCDHB11 Missense_Mutation p.R790Q 0.66 tolerated_low_confidence(0.25) benign(0.004) TCGA-63-A5ML-01 5 140794558 140794558 G A PCDHGA10 Missense_Mutation p.A606T 0.35 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-63-A5ML-01 5 153144027 153144027 G A GRIA1 Nonsense_Mutation p.W629* 0.80 TCGA-63-A5ML-01 5 19839118 19839118 C T CDH18 5'UTR 0.45 TCGA-63-A5ML-01 5 24491925 24491925 T C CDH10 Missense_Mutation p.R546G 0.45 tolerated(0.86) benign(0.002) TCGA-63-A5ML-01 5 33616015 33616015 C T ADAMTS12 Missense_Mutation p.G769E 0.40 deleterious(0) probably_damaging(0.992) TCGA-63-A5ML-01 5 37605182 37605182 G A WDR70 Missense_Mutation p.E312K 0.38 tolerated(0.17) benign(0.063) TCGA-63-A5ML-01 5 41142834 41142834 C A C6 3'UTR 0.53 TCGA-63-A5ML-01 5 41142835 41142835 A G C6 3'UTR 0.50 TCGA-63-A5ML-01 5 5318317 5318317 C G ADAMTS16 Nonsense_Mutation p.S1161* 0.29 TCGA-63-A5ML-01 5 82817209 82817209 G T VCAN Missense_Mutation p.E1028D 0.82 tolerated(0.1) benign(0.044) TCGA-63-A5ML-01 5 82817210 82817210 G T VCAN Nonsense_Mutation p.G1029* 0.82 TCGA-63-A5ML-01 5 89695331 89695331 C A CETN3 Nonsense_Mutation p.E102* 0.68 TCGA-63-A5ML-01 6 100957351 100957351 C G ASCC3 Missense_Mutation p.D2174H 0.58 deleterious(0) probably_damaging(0.992) TCGA-63-A5ML-01 6 101253724 101253724 T A ASCC3 Missense_Mutation p.E278D 0.42 tolerated(0.34) benign(0.003) TCGA-63-A5ML-01 6 10430005 10430005 G T LINC00518 RNA 0.48 TCGA-63-A5ML-01 6 123824880 123824880 T C TRDN Silent p.S259S 0.67 TCGA-63-A5ML-01 6 123892268 123892268 G A TRDN Missense_Mutation p.S11F 0.55 deleterious_low_confidence(0.01) unknown(0) TCGA-63-A5ML-01 6 146264731 146264731 C A SHPRH Missense_Mutation p.D596Y 0.64 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-63-A5ML-01 6 31732104 31732104 G - SAPCD1 Frame_Shift_Del p.R138Qfs*78 0.14 TCGA-63-A5ML-01 6 31779278 31779278 G A HSPA1L Nonsense_Mutation p.Q158* 0.44 TCGA-63-A5ML-01 6 34802033 34802033 C T UHRF1BP1 Silent p.F126F 0.67 TCGA-63-A5ML-01 6 39835496 39835496 C A DAAM2 Missense_Mutation p.S213R 0.49 deleterious(0.01) possibly_damaging(0.659) TCGA-63-A5ML-01 6 43022189 43022189 T C MRPL2 Silent p.V247V 0.07 TCGA-63-A5ML-01 6 49660421 49660421 G T CRISP2 3'UTR 0.20 TCGA-63-A5ML-01 6 50696722 50696722 G C TFAP2D Missense_Mutation p.G251A 0.15 deleterious(0.02) probably_damaging(0.988) TCGA-63-A5ML-01 6 62604665 62604665 T A KHDRBS2 Missense_Mutation p.T229S 0.18 tolerated(0.75) benign(0.01) TCGA-63-A5ML-01 6 7558485 7558485 C G DSP Missense_Mutation p.A137G 0.14 benign(0.091) TCGA-63-A5ML-01 7 100334234 100334234 G - ZAN Frame_Shift_Del p.Y81Tfs*96 0.34 TCGA-63-A5ML-01 7 102098184 102098184 G C ALKBH4 Missense_Mutation p.T189S 0.42 tolerated(0.12) possibly_damaging(0.735) TCGA-63-A5ML-01 7 114294177 114294177 A G FOXP2 Intron 0.57 TCGA-63-A5ML-01 7 11446989 11446989 C A THSD7A Missense_Mutation p.C1287F 0.24 deleterious(0) possibly_damaging(0.897) TCGA-63-A5ML-01 7 124404672 124404672 C G GPR37 Missense_Mutation p.W120S 0.21 deleterious_low_confidence(0) benign(0.086) TCGA-63-A5ML-01 7 129083900 129083900 A C STRIP2 Missense_Mutation p.N79H 0.18 tolerated(0.18) benign(0.005) TCGA-63-A5ML-01 7 132174126 132174126 C A PLXNA4 Missense_Mutation p.M432I 0.47 deleterious(0.01) possibly_damaging(0.472) TCGA-63-A5ML-01 7 146741063 146741063 C T CNTNAP2 Missense_Mutation p.A156V 0.29 deleterious(0.03) possibly_damaging(0.841) TCGA-63-A5ML-01 7 21892206 21892206 G A DNAH11 Missense_Mutation p.R3680K 0.12 benign(0.001) TCGA-63-A5ML-01 7 35293184 35293184 G C TBX20 Missense_Mutation p.N16K 0.19 tolerated(0.07) possibly_damaging(0.847) TCGA-63-A5ML-01 7 39125606 39125606 C A POU6F2 Missense_Mutation p.S55R 0.16 tolerated_low_confidence(0.47) possibly_damaging(0.82) TCGA-63-A5ML-01 7 64528832 64528832 A G SNORA22 3'Flank 0.40 TCGA-63-A5ML-01 7 72413666 72413666 C T POM121 Missense_Mutation p.S780L 0.19 deleterious(0.01) possibly_damaging(0.814) TCGA-63-A5ML-01 7 87195473 87195473 T C ABCB1 Missense_Mutation p.I205M 0.19 tolerated(0.08) possibly_damaging(0.756) TCGA-63-A5ML-01 7 89749029 89749029 G A RP5-1121E10.2 Intron 0.28 TCGA-63-A5ML-01 8 104924379 104924379 A T RIMS2 Silent p.S597S 0.31 TCGA-63-A5ML-01 8 113353747 113353747 T A CSMD3 Missense_Mutation p.D2204V 0.41 deleterious(0) possibly_damaging(0.908) TCGA-63-A5ML-01 8 120569813 120569813 G T ENPP2 Missense_Mutation p.P899Q 0.40 deleterious(0.01) benign(0.03) TCGA-63-A5ML-01 8 125528271 125528271 C T TATDN1 Missense_Mutation p.G68D 0.06 tolerated(1) benign(0) TCGA-63-A5ML-01 8 133645138 133645138 T A LRRC6 Silent p.P167P 0.42 TCGA-63-A5ML-01 8 139151321 139151321 T A FAM135B Missense_Mutation p.K1270I 0.37 deleterious(0) probably_damaging(0.997) TCGA-63-A5ML-01 8 143560684 143560684 T A BAI1 Missense_Mutation p.V521E 0.64 deleterious(0.04) benign(0.403) TCGA-63-A5ML-01 8 25265567 25265567 G T DOCK5 Missense_Mutation p.R1721I 0.38 tolerated(0.1) benign(0.158) TCGA-63-A5ML-01 8 30700380 30700380 T A TEX15 Missense_Mutation p.I2052F 0.38 deleterious(0) possibly_damaging(0.483) TCGA-63-A5ML-01 8 55538223 55538223 A T RP1 Missense_Mutation p.N594I 0.07 tolerated(0.12) benign(0.025) TCGA-63-A5ML-01 8 61729034 61729034 C T CHD7 Nonsense_Mutation p.Q863* 0.28 TCGA-63-A5ML-01 8 69381012 69381012 G T C8orf34 Missense_Mutation p.Q231H 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-63-A5ML-01 8 69552633 69552633 G T C8orf34 Missense_Mutation p.M376I 0.33 deleterious(0.04) probably_damaging(0.983) TCGA-63-A5ML-01 8 70650409 70650409 C A SLCO5A1 Missense_Mutation p.S430I 0.24 deleterious(0.01) possibly_damaging(0.694) TCGA-63-A5ML-01 8 76452252 76452252 G C HNF4G Missense_Mutation p.V9L 0.23 deleterious(0.02) benign(0.003) TCGA-63-A5ML-01 8 92972487 92972487 C T RUNX1T1 Missense_Mutation p.E611K 0.22 deleterious_low_confidence(0.02) unknown(0) TCGA-63-A5ML-01 8 95780663 95780663 C G DPY19L4 Missense_Mutation p.Q406E 0.19 tolerated(0.19) benign(0.391) TCGA-63-A5ML-01 8 98673389 98673389 G C MTDH Missense_Mutation p.K157N 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-63-A5ML-01 9 104192192 104192192 G A ALDOB Missense_Mutation p.R57W 0.81 deleterious(0) probably_damaging(0.999) TCGA-63-A5ML-01 9 140374795 140374795 C T PNPLA7 Missense_Mutation p.G850D 0.06 deleterious(0) probably_damaging(1) TCGA-63-A5ML-01 X 103495053 103495053 G A ESX1 Silent p.P359P 0.64 TCGA-63-A5ML-01 X 109247006 109247017 TCCCGGTATAGC - TMEM164 In_Frame_Del p.S2_S5del 0.66 TCGA-63-A5ML-01 X 117959621 117959621 A G ZCCHC12 Silent p.L138L 0.81 TCGA-63-A5ML-01 X 127185282 127185282 C T ACTRT1 Missense_Mutation p.G302R 0.85 deleterious(0.01) probably_damaging(0.995) TCGA-63-A5ML-01 X 134680364 134680364 G T DDX26B Missense_Mutation p.K133N 0.95 deleterious(0.02) possibly_damaging(0.908) TCGA-63-A5ML-01 X 140993702 140993702 C A MAGEC1 Missense_Mutation p.S171Y 0.82 deleterious_low_confidence(0.04) benign(0.017) TCGA-63-A5ML-01 X 140993971 140993971 G C MAGEC1 Missense_Mutation p.E261Q 0.82 deleterious_low_confidence(0.05) unknown(0) TCGA-63-A5ML-01 X 142716995 142716995 G A SLITRK4 Nonsense_Mutation p.R644* 0.13 TCGA-63-A5ML-01 X 144905425 144905425 G T SLITRK2 Silent p.T494T 0.75 TCGA-63-A5ML-01 X 1471383 1471383 C A IL3RA Silent p.V200V 0.43 TCGA-63-A5ML-01 X 149013442 149013442 G T MAGEA8 Silent p.P132P 0.81 TCGA-63-A5ML-01 X 153664294 153664294 C T ATP6AP1 3'UTR 0.06 TCGA-63-A5ML-01 X 154158907 154158908 TC - F8 Frame_Shift_Del p.E1053Kfs*2 0.39 TCGA-63-A5ML-01 X 34150375 34150375 C A FAM47A Missense_Mutation p.Q7H 0.08 deleterious_low_confidence(0.01) probably_damaging(0.977) TCGA-63-A5ML-01 X 48418622 48418622 G T TBC1D25 Missense_Mutation p.E442D 0.67 tolerated(0.06) probably_damaging(0.978) TCGA-63-A5ML-01 X 51640071 51640071 G T MAGED1 Missense_Mutation p.Q496H 0.91 deleterious_low_confidence(0) unknown(0) TCGA-63-A5ML-01 X 91090591 91090591 A G PCDH11X Missense_Mutation p.I30V 0.85 tolerated(1) benign(0.008) TCGA-63-A5ML-01 Y 15026543 15026543 A C DDX3Y Missense_Mutation p.E247D 0.68 tolerated(0.62) benign(0) TCGA-63-A5MM-01 10 101578629 101578629 A T ABCC2 Missense_Mutation p.D785V 0.12 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 10 102762257 102762257 G A LZTS2 5'UTR 0.19 TCGA-63-A5MM-01 10 103559190 103559190 T G MGEA5 Silent p.G406G 0.11 TCGA-63-A5MM-01 10 104183815 104183817 CTT - CUEDC2 In_Frame_Del p.E177del 0.11 TCGA-63-A5MM-01 10 104853768 104853768 A G NT5C2 Missense_Mutation p.Y317H 0.19 tolerated(0.88) benign(0.021) TCGA-63-A5MM-01 10 117704311 117704311 A C ATRNL1 3'UTR 0.13 TCGA-63-A5MM-01 10 118236788 118236788 T A PNLIPRP3 3'UTR 0.30 TCGA-63-A5MM-01 10 119043034 119043034 T - PDZD8 Frame_Shift_Del p.K1070Nfs*8 0.13 TCGA-63-A5MM-01 10 120830477 120830477 T A EIF3A Missense_Mutation p.N221I 0.36 deleterious(0) unknown(0) TCGA-63-A5MM-01 10 121675398 121675398 A G SEC23IP Missense_Mutation p.D514G 0.18 deleterious(0) probably_damaging(0.998) TCGA-63-A5MM-01 10 124359602 124359602 T C DMBT1 Silent p.P1101P 0.23 TCGA-63-A5MM-01 10 124896798 124896798 G A HMX3 Missense_Mutation p.A209T 0.33 tolerated(0.56) benign(0.004) TCGA-63-A5MM-01 10 125771877 125771877 C T CHST15 Missense_Mutation p.M489I 0.15 tolerated(0.19) benign(0.241) TCGA-63-A5MM-01 10 128821521 128821521 G A DOCK1 Missense_Mutation p.S441N 0.15 tolerated(1) benign(0) TCGA-63-A5MM-01 10 129839189 129839189 C T PTPRE Missense_Mutation p.P15L 0.14 tolerated_low_confidence(0.21) benign(0.022) TCGA-63-A5MM-01 10 129899691 129899691 G A MKI67 Missense_Mutation p.A3179V 0.20 tolerated(1) benign(0) TCGA-63-A5MM-01 10 129907590 129907591 - T MKI67 Frame_Shift_Ins p.N838Kfs*25 0.09 TCGA-63-A5MM-01 10 133930716 133930716 C T JAKMIP3 Missense_Mutation p.R91C 0.10 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 10 133948606 133948606 C T JAKMIP3 Missense_Mutation p.A304V 0.15 deleterious(0.01) benign(0.177) TCGA-63-A5MM-01 10 135000047 135000047 T C KNDC1 Missense_Mutation p.S399P 0.24 tolerated(0.27) benign(0.014) TCGA-63-A5MM-01 10 135053249 135053249 G A VENTX Missense_Mutation p.R104H 0.20 deleterious(0.03) possibly_damaging(0.877) TCGA-63-A5MM-01 10 135126461 135126461 G - ZNF511 3'UTR 0.12 TCGA-63-A5MM-01 10 135197636 135197636 G A PAOX Silent p.S347S 0.17 TCGA-63-A5MM-01 10 135233534 135233534 C T MTG1 Silent p.N290N 0.10 TCGA-63-A5MM-01 10 26436434 26436434 T C MYO3A Missense_Mutation p.S861P 0.21 deleterious(0) probably_damaging(0.953) TCGA-63-A5MM-01 10 26500852 26500852 G A MYO3A Missense_Mutation p.R1604H 0.24 deleterious_low_confidence(0) possibly_damaging(0.522) TCGA-63-A5MM-01 10 28438927 28438927 G A MPP7 Missense_Mutation p.A73V 0.14 tolerated(0.29) benign(0.019) TCGA-63-A5MM-01 10 29769367 29769367 G A SVIL Intron 0.31 TCGA-63-A5MM-01 10 29776087 29776087 C T SVIL Intron 0.25 TCGA-63-A5MM-01 10 3151637 3151637 G A PFKP Missense_Mutation p.A352T 0.19 tolerated(0.16) benign(0.007) TCGA-63-A5MM-01 10 37421224 37421224 A T ANKRD30A Missense_Mutation p.E133D 0.14 deleterious(0.02) possibly_damaging(0.874) TCGA-63-A5MM-01 10 43088158 43088158 T - ZNF33B Frame_Shift_Del p.K747Sfs*26 0.17 TCGA-63-A5MM-01 10 48414131 48414131 G - GDF2 Frame_Shift_Del p.P246Qfs*27 0.18 TCGA-63-A5MM-01 10 5788819 5788819 G A FAM208B Silent p.T1145T 0.20 TCGA-63-A5MM-01 10 5791460 5791460 G A FAM208B Missense_Mutation p.A2026T 0.17 tolerated(0.22) benign(0.231) TCGA-63-A5MM-01 10 5948288 5948288 G A FBXO18 Missense_Mutation p.R200Q 0.20 tolerated(0.47) benign(0.004) TCGA-63-A5MM-01 10 5966463 5966463 A T FBXO18 Missense_Mutation p.D914V 0.12 tolerated(0.28) benign(0.005) TCGA-63-A5MM-01 10 59955944 59955944 G A IPMK Nonsense_Mutation p.R382* 0.23 TCGA-63-A5MM-01 10 64136656 64136656 G A ZNF365 Missense_Mutation p.R235H 0.12 deleterious_low_confidence(0.04) benign(0.116) TCGA-63-A5MM-01 10 70101797 70101797 C T HNRNPH3 Missense_Mutation p.R343C 0.09 deleterious_low_confidence(0.01) benign(0.009) TCGA-63-A5MM-01 10 72299435 72299435 G A PALD1 Missense_Mutation p.V609I 0.16 tolerated(1) benign(0.018) TCGA-63-A5MM-01 10 72462145 72462145 C T ADAMTS14 Silent p.S200S 0.13 TCGA-63-A5MM-01 10 75888939 75888939 A T AP3M1 Missense_Mutation p.S244T 0.22 tolerated(0.11) benign(0.023) TCGA-63-A5MM-01 10 75893803 75893803 C T AP3M1 Missense_Mutation p.A189T 0.13 deleterious(0.01) possibly_damaging(0.532) TCGA-63-A5MM-01 10 76788831 76788831 G T KAT6B Nonsense_Mutation p.E1417* 0.26 TCGA-63-A5MM-01 10 78944583 78944583 G A KCNMA1 Missense_Mutation p.R232W 0.18 deleterious(0.01) probably_damaging(0.98) TCGA-63-A5MM-01 10 81701814 81701814 G A SFTPD Missense_Mutation p.A149V 0.16 tolerated(0.05) benign(0.283) TCGA-63-A5MM-01 10 88702145 88702145 G A MMRN2 Missense_Mutation p.A799V 0.15 tolerated(0.65) benign(0.002) TCGA-63-A5MM-01 10 90433426 90433426 C T LIPF Silent p.L261L 0.18 TCGA-63-A5MM-01 10 93711189 93711189 C T BTAF1 Missense_Mutation p.R144C 0.19 deleterious(0.04) benign(0.014) TCGA-63-A5MM-01 10 93756221 93756221 A C BTAF1 Missense_Mutation p.K1135N 0.29 tolerated(0.24) benign(0.027) TCGA-63-A5MM-01 10 95719412 95719412 G A PIPSL RNA 0.12 TCGA-63-A5MM-01 10 98762113 98762113 G A SLIT1 Nonsense_Mutation p.Q1390* 0.13 TCGA-63-A5MM-01 11 100909899 100909899 A T PGR Nonsense_Mutation p.L917* 0.25 TCGA-63-A5MM-01 11 102743680 102743680 C T MMP12 RNA 0.22 TCGA-63-A5MM-01 11 10514915 10514915 C T AMPD3 Missense_Mutation p.A329V 0.21 deleterious(0.01) probably_damaging(1) TCGA-63-A5MM-01 11 10647910 10647910 C T MRVI1 Missense_Mutation p.G324D 0.12 tolerated(0.08) possibly_damaging(0.691) TCGA-63-A5MM-01 11 107289002 107289002 C T CWF19L2 Missense_Mutation p.R482H 0.09 tolerated(0.08) benign(0) TCGA-63-A5MM-01 11 10789902 10789902 C T CTR9 Missense_Mutation p.A658V 0.08 deleterious(0) probably_damaging(0.968) TCGA-63-A5MM-01 11 10800401 10800401 T A CTR9 Missense_Mutation p.S1091T 0.20 tolerated(0.67) benign(0.001) TCGA-63-A5MM-01 11 108143263 108143263 C G ATM Missense_Mutation p.L1028V 0.17 deleterious(0.01) possibly_damaging(0.77) TCGA-63-A5MM-01 11 113568045 113568045 C T TMPRSS5 Missense_Mutation p.A142T 0.18 tolerated(0.07) benign(0.002) TCGA-63-A5MM-01 11 114182962 114182962 A G NNMT Silent p.L186L 0.12 TCGA-63-A5MM-01 11 115088651 115088651 T C CADM1 Missense_Mutation p.D261G 0.12 tolerated(0.07) benign(0.32) TCGA-63-A5MM-01 11 118038838 118038838 C T SCN2B Missense_Mutation p.R137H 0.19 tolerated(0.15) benign(0.256) TCGA-63-A5MM-01 11 118770701 118770701 C T BCL9L Missense_Mutation p.A1111T 0.10 probably_damaging(0.998) TCGA-63-A5MM-01 11 118917322 118917322 G - HYOU1 Frame_Shift_Del p.L930Sfs*31 0.14 TCGA-63-A5MM-01 11 118942370 118942370 G A VPS11 Missense_Mutation p.R233H 0.14 tolerated(0.36) benign(0.011) TCGA-63-A5MM-01 11 119213688 119213688 G - MFRP Frame_Shift_Del p.H384Tfs*94 0.20 TCGA-63-A5MM-01 11 119290984 119290984 G A THY1 Silent p.Y50Y 0.18 TCGA-63-A5MM-01 11 122930660 122930660 T C HSPA8 Missense_Mutation p.D214G 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.589) TCGA-63-A5MM-01 11 123886300 123886300 G C OR10G4 Missense_Mutation p.V7L 0.15 tolerated(0.11) benign(0.014) TCGA-63-A5MM-01 11 124747371 124747371 C A ROBO3 Intron 0.14 TCGA-63-A5MM-01 11 124756473 124756473 C T ROBO4 Missense_Mutation p.S894N 0.07 deleterious(0) benign(0.213) TCGA-63-A5MM-01 11 124757034 124757034 A G ROBO4 Silent p.S758S 0.10 TCGA-63-A5MM-01 11 124956212 124956212 C T SLC37A2 Intron 0.16 TCGA-63-A5MM-01 11 125299991 125299991 G A PKNOX2 Silent p.A382A 0.27 TCGA-63-A5MM-01 11 125465785 125465785 G T STT3A 5'UTR 0.16 TCGA-63-A5MM-01 11 125476201 125476201 G A STT3A Silent p.S207S 0.08 TCGA-63-A5MM-01 11 126162381 126162381 G T TIRAP Missense_Mutation p.R26M 0.16 deleterious(0) probably_damaging(0.999) TCGA-63-A5MM-01 11 134121154 134121154 G C THYN1 Missense_Mutation p.A31G 0.12 tolerated(0.15) benign(0.009) TCGA-63-A5MM-01 11 17409078 17409078 C T KCNJ11 Silent p.A187A 0.24 TCGA-63-A5MM-01 11 1780830 1780830 G - CTSD Frame_Shift_Del p.Q90Sfs*43 0.14 TCGA-63-A5MM-01 11 18764922 18764922 C T PTPN5 Missense_Mutation p.A116T 0.20 tolerated_low_confidence(0.1) benign(0.007) TCGA-63-A5MM-01 11 2185459 2185459 G A TH 3'UTR 0.21 TCGA-63-A5MM-01 11 28058163 28058164 - T KIF18A Frame_Shift_Ins p.R666Kfs*29 0.20 TCGA-63-A5MM-01 11 320786 320788 AGA - IFITM3 In_Frame_Del p.F9del 0.16 TCGA-63-A5MM-01 11 32410611 32410611 G A WT1 Missense_Mutation p.A516V 0.25 deleterious_low_confidence(0) possibly_damaging(0.503) TCGA-63-A5MM-01 11 33094248 33094248 A T TCP11L1 3'UTR 0.20 TCGA-63-A5MM-01 11 33308378 33308378 G A HIPK3 Missense_Mutation p.A140T 0.11 tolerated(0.92) benign(0.004) TCGA-63-A5MM-01 11 33777391 33777391 T C FBXO3 Missense_Mutation p.T202A 0.15 deleterious(0.02) probably_damaging(0.99) TCGA-63-A5MM-01 11 3380916 3380916 T C ZNF195 Missense_Mutation p.D441G 0.21 deleterious(0.03) benign(0.152) TCGA-63-A5MM-01 11 34194762 34194762 T G ABTB2 Missense_Mutation p.D446A 0.25 deleterious(0) benign(0.198) TCGA-63-A5MM-01 11 35323160 35323160 C T SLC1A2 Missense_Mutation p.A255T 0.18 tolerated(0.05) benign(0.028) TCGA-63-A5MM-01 11 35454089 35454089 T C PAMR1 Missense_Mutation p.I677V 0.12 tolerated(0.14) probably_damaging(0.992) TCGA-63-A5MM-01 11 3716707 3716707 C T NUP98 Missense_Mutation p.R1380H 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-63-A5MM-01 11 375707 375707 C T B4GALNT4 Missense_Mutation p.R307C 0.17 tolerated(0.14) possibly_damaging(0.872) TCGA-63-A5MM-01 11 404596 404596 C T PKP3 3'UTR 0.24 TCGA-63-A5MM-01 11 4566999 4566999 C T OR52M1 Silent p.G193G 0.18 TCGA-63-A5MM-01 11 45832603 45832603 C T SLC35C1 Missense_Mutation p.T271M 0.12 deleterious(0.05) possibly_damaging(0.908) TCGA-63-A5MM-01 11 45925641 45925641 G A MAPK8IP1 Missense_Mutation p.R532H 0.12 deleterious(0) probably_damaging(0.998) TCGA-63-A5MM-01 11 46389578 46389578 C T DGKZ Silent p.C319C 0.13 TCGA-63-A5MM-01 11 47469513 47469513 T C RAPSN Missense_Mutation p.S128G 0.15 tolerated(0.48) possibly_damaging(0.507) TCGA-63-A5MM-01 11 5221056 5221056 A T OR51V1 Missense_Mutation p.F292Y 0.20 deleterious(0) probably_damaging(0.976) TCGA-63-A5MM-01 11 5372859 5372859 G A OR51B6 Missense_Mutation p.G41D 0.12 tolerated(0.07) benign(0.288) TCGA-63-A5MM-01 11 55406270 55406270 G T OR4P4 Missense_Mutation p.C146F 0.13 deleterious(0.01) probably_damaging(0.936) TCGA-63-A5MM-01 11 55761685 55761685 G A OR5F1 Silent p.T139T 0.22 TCGA-63-A5MM-01 11 56143793 56143793 G T OR8U1 Nonsense_Mutation p.E232* 0.07 TCGA-63-A5MM-01 11 57136888 57136888 T C P2RX3 Missense_Mutation p.Y353H 0.16 deleterious(0) probably_damaging(0.982) TCGA-63-A5MM-01 11 58978347 58978347 G A MPEG1 Silent p.V664V 0.06 TCGA-63-A5MM-01 11 59940559 59940559 C - MS4A6A Frame_Shift_Del p.C226Sfs*2 0.12 TCGA-63-A5MM-01 11 60150713 60150713 C T MS4A7 Silent p.N33N 0.11 TCGA-63-A5MM-01 11 61318897 61318897 C T SYT7 Silent p.T58T 0.15 TCGA-63-A5MM-01 11 613392 613392 G T IRF7 Silent p.R364R 0.13 TCGA-63-A5MM-01 11 61507054 61507054 G A DAGLA Missense_Mutation p.A592T 0.12 deleterious(0.05) probably_damaging(0.989) TCGA-63-A5MM-01 11 61727048 61727048 C T BEST1 Nonsense_Mutation p.Q256* 0.11 TCGA-63-A5MM-01 11 617603 617603 G - CDHR5 Frame_Shift_Del p.A763Qfs*12 0.27 TCGA-63-A5MM-01 11 62290572 62290572 C T AHNAK Missense_Mutation p.D3773N 0.16 possibly_damaging(0.772) TCGA-63-A5MM-01 11 62300686 62300686 A T AHNAK Silent p.A401A 0.18 TCGA-63-A5MM-01 11 6239032 6239032 C T FAM160A2 Missense_Mutation p.R609H 0.22 tolerated(0.14) probably_damaging(0.987) TCGA-63-A5MM-01 11 6243694 6243694 G A FAM160A2 Missense_Mutation p.A390V 0.09 deleterious(0.01) benign(0.298) TCGA-63-A5MM-01 11 62520527 62520527 C T ZBTB3 Missense_Mutation p.A254T 0.15 tolerated(0.28) benign(0.023) TCGA-63-A5MM-01 11 62558180 62558180 C T TMEM223 Missense_Mutation p.R175H 0.18 deleterious(0.03) probably_damaging(0.987) TCGA-63-A5MM-01 11 62572828 62572828 T C NXF1 Translation_Start_Site p.M1? 0.13 deleterious(0.01) benign(0.009) TCGA-63-A5MM-01 11 6292182 6292182 C T CCKBR Intron 0.09 TCGA-63-A5MM-01 11 63585828 63585828 G A C11orf84 Missense_Mutation p.E200K 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.595) TCGA-63-A5MM-01 11 64004947 64004948 - C VEGFB Frame_Shift_Ins p.G158Rfs*7 0.10 TCGA-63-A5MM-01 11 64026100 64026100 C T PLCB3 Missense_Mutation p.R390C 0.13 deleterious(0) probably_damaging(0.92) TCGA-63-A5MM-01 11 6413226 6413226 C T SMPD1 Missense_Mutation p.P311S 0.14 tolerated(0.43) benign(0.061) TCGA-63-A5MM-01 11 644514 644514 C T DEAF1 3'UTR 0.33 TCGA-63-A5MM-01 11 64825398 64825398 C - NAALADL1 Frame_Shift_Del p.P144Qfs*47 0.13 TCGA-63-A5MM-01 11 64876308 64876308 C T VPS51 Silent p.S455S 0.21 TCGA-63-A5MM-01 11 65272353 65272353 G A MALAT1 RNA 0.12 TCGA-63-A5MM-01 11 65824822 65824822 G A SF3B2 Silent p.P251P 0.34 TCGA-63-A5MM-01 11 6592278 6592278 C T DNHD1 Silent p.G4512G 0.29 TCGA-63-A5MM-01 11 6623428 6623428 C A RRP8 Missense_Mutation p.Q39H 0.19 tolerated_low_confidence(0.18) benign(0.004) TCGA-63-A5MM-01 11 66264902 66264902 G A DPP3 Missense_Mutation p.R611Q 0.07 tolerated(0.57) benign(0.001) TCGA-63-A5MM-01 11 6632168 6632168 C T TAF10 Silent p.P214P 0.19 TCGA-63-A5MM-01 11 6661339 6661339 T G DCHS1 Missense_Mutation p.Q502H 0.11 tolerated(0.14) possibly_damaging(0.461) TCGA-63-A5MM-01 11 66617582 66617582 C T PC Silent p.T908T 0.21 TCGA-63-A5MM-01 11 6662303 6662303 G A DCHS1 Missense_Mutation p.A181V 0.21 tolerated(1) benign(0.009) TCGA-63-A5MM-01 11 6662451 6662451 G A DCHS1 Nonsense_Mutation p.R132* 0.16 TCGA-63-A5MM-01 11 67816426 67816426 C T TCIRG1 Silent p.H545H 0.15 TCGA-63-A5MM-01 11 69462905 69462905 G A CCND1 Missense_Mutation p.D240N 0.12 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 11 70333443 70333443 T C SHANK2 Silent p.P986P 0.10 TCGA-63-A5MM-01 11 71249277 71249277 G A KRTAP5-8 Missense_Mutation p.G59D 0.16 deleterious_low_confidence(0.04) unknown(0) TCGA-63-A5MM-01 11 71725245 71725245 C T NUMA1 Missense_Mutation p.A1102T 0.11 benign(0.003) TCGA-63-A5MM-01 11 72423754 72423754 C - ARAP1 Intron 0.15 TCGA-63-A5MM-01 11 72533587 72533587 G A ATG16L2 Missense_Mutation p.E237K 0.11 tolerated(0.19) probably_damaging(0.96) TCGA-63-A5MM-01 11 76814249 76814249 G A OMP Missense_Mutation p.A122T 0.14 tolerated_low_confidence(0.06) probably_damaging(0.998) TCGA-63-A5MM-01 11 76831836 76831836 C T CAPN5 Silent p.S456S 0.16 TCGA-63-A5MM-01 11 77413116 77413116 T - RSF1 Frame_Shift_Del p.K386Nfs*6 0.16 TCGA-63-A5MM-01 11 77784178 77784178 C T NDUFC2 Missense_Mutation p.R59H 0.07 tolerated(0.07) probably_damaging(1) TCGA-63-A5MM-01 11 93454988 93454988 C T KIAA1731 Intron 0.10 TCGA-63-A5MM-01 11 99715866 99715866 A G CNTN5 Missense_Mutation p.Y150C 0.14 deleterious(0) probably_damaging(0.98) TCGA-63-A5MM-01 12 101713365 101713365 T C UTP20 Silent p.N927N 0.11 TCGA-63-A5MM-01 12 103234205 103234205 G A PAH Missense_Mutation p.L430F 0.15 deleterious(0) possibly_damaging(0.548) TCGA-63-A5MM-01 12 104042601 104042601 G T STAB2 Missense_Mutation p.D392Y 0.07 deleterious(0.01) benign(0.282) TCGA-63-A5MM-01 12 104496804 104496804 C T HCFC2 Missense_Mutation p.S711L 0.08 deleterious(0) probably_damaging(0.997) TCGA-63-A5MM-01 12 106464586 106464586 G T NUAK1 Missense_Mutation p.S266R 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-63-A5MM-01 12 107083128 107083128 G A RFX4 Missense_Mutation p.A228T 0.12 tolerated(0.11) possibly_damaging(0.692) TCGA-63-A5MM-01 12 109616951 109616951 G A ACACB Missense_Mutation p.R499H 0.13 deleterious(0.01) benign(0.323) TCGA-63-A5MM-01 12 109898544 109898544 G A KCTD10 Missense_Mutation p.A95V 0.09 tolerated(0.2) benign(0.327) TCGA-63-A5MM-01 12 109972527 109972527 C T UBE3B Silent p.S1049S 0.11 TCGA-63-A5MM-01 12 110240852 110240852 C T TRPV4 Missense_Mutation p.R219H 0.19 deleterious(0) benign(0.007) TCGA-63-A5MM-01 12 112888163 112888163 G A PTPN11 Missense_Mutation p.G60D 0.16 tolerated(0.06) probably_damaging(0.999) TCGA-63-A5MM-01 12 113596776 113596776 G C DDX54 Missense_Mutation p.S852C 0.17 deleterious(0.02) possibly_damaging(0.879) TCGA-63-A5MM-01 12 118599655 118599655 G A TAOK3 Nonsense_Mutation p.R693* 0.12 TCGA-63-A5MM-01 12 11905443 11905443 G A ETV6 Silent p.T31T 0.16 TCGA-63-A5MM-01 12 119588851 119588851 C A SRRM4 Missense_Mutation p.A369D 0.15 deleterious_low_confidence(0.01) benign(0.235) TCGA-63-A5MM-01 12 120139480 120139480 C A CIT Missense_Mutation p.V1831L 0.12 tolerated(0.71) benign(0.008) TCGA-63-A5MM-01 12 121437163 121437163 G A HNF1A Missense_Mutation p.A532T 0.33 tolerated(1) benign(0.035) TCGA-63-A5MM-01 12 121442270 121442270 G A C12orf43 Missense_Mutation p.R159W 0.17 deleterious(0) possibly_damaging(0.809) TCGA-63-A5MM-01 12 122862243 122862252 ATGCCCTTTA - CLIP1 Frame_Shift_Del p.L114Yfs*8 0.11 TCGA-63-A5MM-01 12 124104017 124104017 C A DDX55 Missense_Mutation p.L458M 0.18 deleterious(0) probably_damaging(0.993) TCGA-63-A5MM-01 12 124840076 124840076 C T NCOR2 Missense_Mutation p.V1095I 0.15 possibly_damaging(0.585) TCGA-63-A5MM-01 12 124856638 124856638 G - NCOR2 Frame_Shift_Del p.Q913Rfs*51 0.10 TCGA-63-A5MM-01 12 125397302 125397302 C T UBC Missense_Mutation p.G339D 0.16 deleterious(0.01) probably_damaging(1) TCGA-63-A5MM-01 12 129283886 129283886 G A SLC15A4 Silent p.G497G 0.14 TCGA-63-A5MM-01 12 13061812 13061812 G A GPRC5A Missense_Mutation p.G210E 0.14 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 12 13219585 13219585 C T KIAA1467 Silent p.C288C 0.10 TCGA-63-A5MM-01 12 132393740 132393740 C T ULK1 Silent p.G208G 0.20 TCGA-63-A5MM-01 12 132490690 132490690 G A EP400 Missense_Mutation p.R990H 0.08 unknown(0) TCGA-63-A5MM-01 12 133319858 133319858 T C ANKLE2 Missense_Mutation p.Y412C 0.12 tolerated(0.22) possibly_damaging(0.907) TCGA-63-A5MM-01 12 14576914 14576914 A T ATF7IP Missense_Mutation p.D22V 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-63-A5MM-01 12 14959059 14959059 T - SMCO3 Frame_Shift_Del p.T186Hfs*35 0.16 TCGA-63-A5MM-01 12 18435288 18435289 - A PIK3C2G Frame_Shift_Ins p.S93Kfs*3 0.11 TCGA-63-A5MM-01 12 20522723 20522723 G - PDE3A Frame_Shift_Del p.E171Kfs*36 0.18 TCGA-63-A5MM-01 12 21069157 21069157 G A SLCO1B3 Missense_Mutation p.M695I 0.16 tolerated_low_confidence(0.24) benign(0) TCGA-63-A5MM-01 12 22354440 22354440 A C ST8SIA1 3'UTR 0.13 TCGA-63-A5MM-01 12 248348 248348 G A IQSEC3 Missense_Mutation p.A607T 0.40 tolerated(0.2) possibly_damaging(0.821) TCGA-63-A5MM-01 12 27934009 27934009 C T KLHL42 Missense_Mutation p.A249V 0.23 deleterious(0.01) possibly_damaging(0.86) TCGA-63-A5MM-01 12 32140217 32140217 G A KIAA1551 Missense_Mutation p.A1683T 0.30 tolerated(1) benign(0) TCGA-63-A5MM-01 12 42836497 42836497 A T PPHLN1 Missense_Mutation p.D360V 0.13 deleterious_low_confidence(0) benign(0.045) TCGA-63-A5MM-01 12 42858235 42858235 C T PRICKLE1 Missense_Mutation p.R534Q 0.17 tolerated(0.1) benign(0.387) TCGA-63-A5MM-01 12 45173737 45173737 C T NELL2 Missense_Mutation p.R185H 0.18 tolerated(0.12) benign(0.01) TCGA-63-A5MM-01 12 45269118 45269118 T C NELL2 Missense_Mutation p.D75G 0.14 deleterious(0.01) probably_damaging(0.989) TCGA-63-A5MM-01 12 48272746 48272746 C T VDR Intron 0.10 TCGA-63-A5MM-01 12 48723395 48723395 G A H1FNT Silent p.T107T 0.11 TCGA-63-A5MM-01 12 49444220 49444220 C T KMT2D Missense_Mutation p.V1051I 0.21 benign(0.029) TCGA-63-A5MM-01 12 49445806 49445806 A G KMT2D Silent p.L554L 0.10 TCGA-63-A5MM-01 12 50025308 50025308 C T PRPF40B Missense_Mutation p.A70V 0.11 tolerated(0.11) unknown(0) TCGA-63-A5MM-01 12 52200163 52200163 C G SCN8A Missense_Mutation p.I1631M 0.06 deleterious(0) probably_damaging(0.992) TCGA-63-A5MM-01 12 52822413 52822413 C T KRT75 Missense_Mutation p.V384I 0.10 tolerated(0.08) benign(0.344) TCGA-63-A5MM-01 12 52845445 52845445 C T KRT6B Missense_Mutation p.V140I 0.08 tolerated(0.68) benign(0.04) TCGA-63-A5MM-01 12 53005076 53005076 T C KRT73 Missense_Mutation p.D341G 0.15 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 12 53045675 53045675 G A KRT2 Silent p.G84G 0.13 TCGA-63-A5MM-01 12 53069123 53069123 C T KRT1 Missense_Mutation p.G597S 0.20 tolerated_low_confidence(0.52) unknown(0) TCGA-63-A5MM-01 12 53680566 53680566 C A ESPL1 Missense_Mutation p.P1349H 0.11 deleterious(0) probably_damaging(0.995) TCGA-63-A5MM-01 12 54069952 54069952 C T ATP5G2 Missense_Mutation p.A9T 0.16 deleterious_low_confidence(0) benign(0.001) TCGA-63-A5MM-01 12 54367186 54367186 C - HOXC11 Frame_Shift_Del p.S56Lfs*60 0.17 TCGA-63-A5MM-01 12 54677714 54677714 C T HNRNPA1 Silent p.G342G 0.19 TCGA-63-A5MM-01 12 56537706 56537706 G A ESYT1 3'UTR 0.10 TCGA-63-A5MM-01 12 57114908 57114908 G C NACA Missense_Mutation p.P136A 0.17 deleterious_low_confidence(0) benign(0) TCGA-63-A5MM-01 12 57572289 57572289 G A LRP1 Silent p.K1503K 0.14 TCGA-63-A5MM-01 12 57870724 57870724 C T ARHGAP9 Missense_Mutation p.R298H 0.21 tolerated(0.14) benign(0.007) TCGA-63-A5MM-01 12 57911120 57911120 C T DDIT3 Missense_Mutation p.D47N 0.23 deleterious(0) probably_damaging(0.998) TCGA-63-A5MM-01 12 58350479 58350479 C T XRCC6BP1 Nonsense_Mutation p.R183* 0.23 TCGA-63-A5MM-01 12 60168856 60168856 T - SLC16A7 Frame_Shift_Del p.F262Lfs*39 0.16 TCGA-63-A5MM-01 12 6657974 6657974 C - IFFO1 Frame_Shift_Del p.R367Gfs*47 0.32 TCGA-63-A5MM-01 12 67700243 67700243 T G CAND1 Missense_Mutation p.I932S 0.21 deleterious(0) possibly_damaging(0.594) TCGA-63-A5MM-01 12 6859360 6859360 G A MLF2 Missense_Mutation p.R128C 0.17 deleterious(0) probably_damaging(0.967) TCGA-63-A5MM-01 12 7241926 7241926 T C C1R Missense_Mutation p.D243G 0.30 deleterious(0.03) probably_damaging(0.99) TCGA-63-A5MM-01 12 7556366 7556366 C T CD163L1 Nonsense_Mutation p.W391* 0.12 TCGA-63-A5MM-01 12 7640564 7640564 C T CD163 Missense_Mutation p.V514I 0.08 deleterious(0.04) probably_damaging(0.999) TCGA-63-A5MM-01 12 7982402 7982402 A T SLC2A14 Missense_Mutation p.L181H 0.12 deleterious(0) probably_damaging(0.996) TCGA-63-A5MM-01 12 80633210 80633210 A T OTOGL Missense_Mutation p.D339V 0.21 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 12 8212639 8212639 G A C3AR1 Missense_Mutation p.A48V 0.16 tolerated(0.1) possibly_damaging(0.544) TCGA-63-A5MM-01 12 91449520 91449520 T C KERA Missense_Mutation p.D180G 0.16 deleterious(0) probably_damaging(0.989) TCGA-63-A5MM-01 12 94243944 94243944 G A CRADD Missense_Mutation p.R166H 0.09 tolerated(0.13) benign(0.018) TCGA-63-A5MM-01 12 94613826 94613826 G A PLXNC1 Missense_Mutation p.R530K 0.17 tolerated(0.95) benign(0.001) TCGA-63-A5MM-01 12 96640867 96640867 C T ELK3 Silent p.R119R 0.11 TCGA-63-A5MM-01 12 97078888 97078888 C T C12orf55 Silent p.G1962G 0.20 TCGA-63-A5MM-01 13 100214978 100214978 T C TM9SF2 Missense_Mutation p.V653A 0.13 deleterious(0) benign(0.424) TCGA-63-A5MM-01 13 103718359 103718359 G T SLC10A2 Missense_Mutation p.L81I 0.18 deleterious(0.01) probably_damaging(0.973) TCGA-63-A5MM-01 13 109617197 109617198 - T MYO16 Frame_Shift_Ins p.L752Ffs*14 0.16 TCGA-63-A5MM-01 13 110434579 110434579 C T IRS2 Silent p.P1274P 0.21 TCGA-63-A5MM-01 13 110861235 110861235 T C COL4A1 Silent p.G218G 0.17 TCGA-63-A5MM-01 13 111154108 111154108 C T COL4A2 Missense_Mutation p.A1285V 0.13 possibly_damaging(0.798) TCGA-63-A5MM-01 13 111156585 111156585 G A COL4A2 Missense_Mutation p.G1459D 0.18 unknown(0) TCGA-63-A5MM-01 13 111298324 111298324 G A CARS2 Missense_Mutation p.A436V 0.15 tolerated(0.18) benign(0.014) TCGA-63-A5MM-01 13 111371694 111371694 C T ING1 Silent p.G228G 0.21 TCGA-63-A5MM-01 13 113181361 113181361 G T TUBGCP3 Missense_Mutation p.L484I 0.26 deleterious(0) possibly_damaging(0.838) TCGA-63-A5MM-01 13 113738348 113738348 C T MCF2L Silent p.C676C 0.12 TCGA-63-A5MM-01 13 20625630 20625630 C T ZMYM2 Missense_Mutation p.R784C 0.16 deleterious(0) possibly_damaging(0.776) TCGA-63-A5MM-01 13 24844929 24844929 C T SPATA13 Intron 0.12 TCGA-63-A5MM-01 13 25480009 25480009 T C CENPJ Missense_Mutation p.R723G 0.24 tolerated(0.35) benign(0.004) TCGA-63-A5MM-01 13 25745694 25745694 A G AMER2 Missense_Mutation p.S22P 0.20 tolerated_low_confidence(0.4) unknown(0) TCGA-63-A5MM-01 13 27239199 27239199 T C WASF3 Silent p.F56F 0.20 TCGA-63-A5MM-01 13 27332981 27332981 C T GPR12 Silent p.A328A 0.19 TCGA-63-A5MM-01 13 30077361 30077361 C T MTUS2 3'UTR 0.11 TCGA-63-A5MM-01 13 32841451 32841451 C T FRY Silent p.G2697G 0.12 TCGA-63-A5MM-01 13 33275576 33275576 G T PDS5B Splice_Site p.X619_splice 0.21 TCGA-63-A5MM-01 13 35733451 35733451 T C NBEA Missense_Mutation p.V1048A 0.20 tolerated_low_confidence(0.23) benign(0.084) TCGA-63-A5MM-01 13 36125104 36125104 A - NBEA Frame_Shift_Del p.V2250Lfs*10 0.09 TCGA-63-A5MM-01 13 36385035 36385035 C T DCLK1 Missense_Mutation p.G542D 0.16 tolerated(0.22) probably_damaging(0.969) TCGA-63-A5MM-01 13 41834846 41834846 G T MTRF1 Silent p.T66T 0.18 TCGA-63-A5MM-01 13 45523889 45523889 C T NUFIP1 Missense_Mutation p.G369D 0.16 deleterious(0.02) benign(0.052) TCGA-63-A5MM-01 13 46287535 46287535 C T SPERT Silent p.D125D 0.17 TCGA-63-A5MM-01 13 46559563 46559563 C T ZC3H13 Missense_Mutation p.G530D 0.12 probably_damaging(0.996) TCGA-63-A5MM-01 13 46619175 46619175 T C ZC3H13 Missense_Mutation p.T48A 0.17 unknown(0) TCGA-63-A5MM-01 13 50589471 50589471 C T TRIM13 3'Flank 0.19 TCGA-63-A5MM-01 13 53422281 53422281 G A PCDH8 Silent p.G97G 0.13 TCGA-63-A5MM-01 13 73369612 73369612 C T PIBF1 Missense_Mutation p.R157C 0.19 deleterious(0) possibly_damaging(0.832) TCGA-63-A5MM-01 13 76378567 76378567 G A LMO7 Silent p.Q35Q 0.16 TCGA-63-A5MM-01 13 88329602 88329602 C T SLITRK5 Silent p.G653G 0.17 TCGA-63-A5MM-01 13 95121213 95121213 G A DCT Nonsense_Mutation p.Q128* 0.15 TCGA-63-A5MM-01 13 99361893 99361893 C T SLC15A1 Missense_Mutation p.V334M 0.15 deleterious(0) possibly_damaging(0.513) TCGA-63-A5MM-01 13 99907671 99907671 C T GPR18 Silent p.T152T 0.19 TCGA-63-A5MM-01 14 100847450 100847450 G A WDR25 Silent p.Q63Q 0.19 TCGA-63-A5MM-01 14 102483504 102483504 G A DYNC1H1 Missense_Mutation p.R2643H 0.20 probably_damaging(0.954) TCGA-63-A5MM-01 14 103432641 103432641 G A CDC42BPB Missense_Mutation p.S852F 0.08 deleterious(0.04) possibly_damaging(0.522) TCGA-63-A5MM-01 14 103447181 103447181 A G CDC42BPB Missense_Mutation p.Y357H 0.13 deleterious(0) probably_damaging(0.998) TCGA-63-A5MM-01 14 104165816 104165816 C T XRCC3 Missense_Mutation p.R220H 0.14 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 14 105818795 105818797 CTC - PACS2 In_Frame_Del p.S97del 0.16 TCGA-63-A5MM-01 14 105936469 105936469 G A MTA1 Missense_Mutation p.A689T 0.18 tolerated(0.63) benign(0.04) TCGA-63-A5MM-01 14 20757873 20757873 C T TTC5 Silent p.T412T 0.12 TCGA-63-A5MM-01 14 21025156 21025156 G A RNASE9 Nonsense_Mutation p.Q30* 0.14 TCGA-63-A5MM-01 14 21502125 21502125 G T RNASE13 Missense_Mutation p.P108H 0.20 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 14 21554013 21554013 G A ARHGEF40 Missense_Mutation p.A1376T 0.19 tolerated(0.45) benign(0.076) TCGA-63-A5MM-01 14 21863092 21863092 G A CHD8 Missense_Mutation p.A1790V 0.16 tolerated(0.22) benign(0.021) TCGA-63-A5MM-01 14 21896189 21896189 T C CHD8 Missense_Mutation p.I480M 0.19 deleterious(0) possibly_damaging(0.557) TCGA-63-A5MM-01 14 23375466 23375466 C T RBM23 Silent p.S113S 0.15 TCGA-63-A5MM-01 14 23533365 23533365 G A ACIN1 Silent p.G906G 0.20 TCGA-63-A5MM-01 14 24608792 24608792 G A EMC9 Nonsense_Mutation p.R103* 0.17 TCGA-63-A5MM-01 14 24626838 24626838 C T RNF31 Silent p.Y906Y 0.19 TCGA-63-A5MM-01 14 24648626 24648626 G C REC8 Missense_Mutation p.E425Q 0.04 deleterious(0.01) probably_damaging(0.986) TCGA-63-A5MM-01 14 24659701 24659701 C T TM9SF1 Missense_Mutation p.A438T 0.08 tolerated(0.21) benign(0.107) TCGA-63-A5MM-01 14 24766024 24766024 G A DHRS1 Nonsense_Mutation p.R72* 0.11 TCGA-63-A5MM-01 14 28733953 28733953 A G BNIP3P1 RNA 0.12 TCGA-63-A5MM-01 14 31614094 31614094 G A HECTD1 Silent p.S850S 0.12 TCGA-63-A5MM-01 14 34269229 34269229 C T NPAS3 Silent p.C572C 0.23 TCGA-63-A5MM-01 14 50101267 50101267 G A DNAAF2 Silent p.L201L 0.29 TCGA-63-A5MM-01 14 55241810 55241810 G A SAMD4A Missense_Mutation p.R625H 0.19 deleterious(0) probably_damaging(0.999) TCGA-63-A5MM-01 14 57052612 57052612 T - TMEM260 Frame_Shift_Del p.F111Sfs*25 0.18 TCGA-63-A5MM-01 14 57735937 57735937 G T AP5M1 5'UTR 0.27 TCGA-63-A5MM-01 14 57858335 57858335 C T NAA30 Silent p.S220S 0.17 TCGA-63-A5MM-01 14 63246604 63246604 T - KCNH5 Frame_Shift_Del p.T621Pfs*13 0.16 TCGA-63-A5MM-01 14 63417257 63417257 A G KCNH5 Silent p.S321S 0.26 TCGA-63-A5MM-01 14 65008187 65008188 - T HSPA2 Frame_Shift_Ins p.D209Rfs*26 0.13 TCGA-63-A5MM-01 14 65008459 65008459 A G HSPA2 Missense_Mutation p.T298A 0.10 tolerated_low_confidence(0.06) benign(0.432) TCGA-63-A5MM-01 14 68248228 68248228 T C ZFYVE26 Missense_Mutation p.Y1464C 0.21 deleterious(0.01) possibly_damaging(0.594) TCGA-63-A5MM-01 14 68248229 68248229 A T ZFYVE26 Missense_Mutation p.Y1464N 0.10 deleterious(0.01) benign(0.154) TCGA-63-A5MM-01 14 70477639 70477639 G A SMOC1 Missense_Mutation p.R278H 0.07 deleterious(0.03) probably_damaging(0.927) TCGA-63-A5MM-01 14 70924380 70924380 C T ADAM21 Missense_Mutation p.A55V 0.12 tolerated(0.15) benign(0.038) TCGA-63-A5MM-01 14 73569999 73569999 C T RBM25 Nonsense_Mutation p.R323* 0.24 TCGA-63-A5MM-01 14 73822364 73822364 A C NUMB Silent p.V32V 0.11 TCGA-63-A5MM-01 14 74769582 74769582 C T ABCD4 Missense_Mutation p.A12T 0.19 tolerated_low_confidence(0.57) unknown(0) TCGA-63-A5MM-01 14 75149998 75149998 C T AREL1 Splice_Site p.X161_splice 0.12 TCGA-63-A5MM-01 14 76964593 76964593 A C ESRRB Missense_Mutation p.K365T 0.11 deleterious(0.03) possibly_damaging(0.451) TCGA-63-A5MM-01 14 76964795 76964795 G T ESRRB Missense_Mutation p.K432N 0.10 tolerated(0.08) benign(0.267) TCGA-63-A5MM-01 14 77493552 77493552 C - IRF2BPL Frame_Shift_Del p.G195Afs*17 0.13 TCGA-63-A5MM-01 14 77810168 77810168 T C TMED8 Splice_Site p.X110_splice 0.18 TCGA-63-A5MM-01 14 77941925 77941925 A T ISM2 3'UTR 0.16 TCGA-63-A5MM-01 14 89647123 89647123 G A FOXN3 Missense_Mutation p.A280V 0.29 tolerated(0.14) benign(0.015) TCGA-63-A5MM-01 14 90755078 90755078 C T NRDE2 Missense_Mutation p.A881T 0.24 tolerated(0.11) benign(0.016) TCGA-63-A5MM-01 14 93151399 93151399 G A RIN3 Silent p.V845V 0.14 TCGA-63-A5MM-01 14 94776090 94776090 G A SERPINA6 Silent p.S289S 0.14 TCGA-63-A5MM-01 14 99871695 99871696 - A SETD3 Frame_Shift_Ins p.Y313Lfs*18 0.16 TCGA-63-A5MM-01 15 101569415 101569415 G A LRRK1 Missense_Mutation p.A981T 0.11 deleterious(0) probably_damaging(0.999) TCGA-63-A5MM-01 15 102358763 102358763 C T OR4F15 Missense_Mutation p.A125V 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-63-A5MM-01 15 22705402 22705402 G A AC116165.1 3'Flank 0.44 TCGA-63-A5MM-01 15 23108846 23108846 C T RP11-566K19.6 RNA 0.15 TCGA-63-A5MM-01 15 24923240 24923240 C G NPAP1 Silent p.V742V 0.06 TCGA-63-A5MM-01 15 24923393 24923393 G T NPAP1 Silent p.L793L 0.21 TCGA-63-A5MM-01 15 25429516 25429516 T A SNORD115-8 RNA 0.12 TCGA-63-A5MM-01 15 25465709 25465709 G T SNORD115-27 RNA 0.14 TCGA-63-A5MM-01 15 28326977 28326977 G A OCA2 Missense_Mutation p.P15L 0.17 tolerated_low_confidence(0.8) benign(0) TCGA-63-A5MM-01 15 28473494 28473494 C - HERC2 Frame_Shift_Del p.T1779Pfs*10 0.12 TCGA-63-A5MM-01 15 33359262 33359262 G A FMN1 Missense_Mutation p.A275V 0.12 deleterious(0) unknown(0) TCGA-63-A5MM-01 15 40094249 40094249 A G GPR176 Missense_Mutation p.I211T 0.16 deleterious(0.01) benign(0.426) TCGA-63-A5MM-01 15 41105084 41105084 A G ZFYVE19 Silent p.G338G 0.17 TCGA-63-A5MM-01 15 41793920 41793920 A G ITPKA Missense_Mutation p.D225G 0.24 deleterious(0) probably_damaging(0.999) TCGA-63-A5MM-01 15 42442646 42442646 C T PLA2G4F Silent p.K270K 0.22 TCGA-63-A5MM-01 15 42565552 42565552 C T TMEM87A Silent p.L15L 0.09 TCGA-63-A5MM-01 15 43701263 43701263 G A TP53BP1 Missense_Mutation p.A1811V 0.13 deleterious(0) probably_damaging(0.999) TCGA-63-A5MM-01 15 43816618 43816618 C T MAP1A Missense_Mutation p.R983W 0.18 probably_damaging(1) TCGA-63-A5MM-01 15 44087279 44087279 G - SERINC4 Frame_Shift_Del p.T493Pfs*9 0.17 TCGA-63-A5MM-01 15 51289565 51289565 T A AP4E1 Missense_Mutation p.S797T 0.17 tolerated(0.07) benign(0.038) TCGA-63-A5MM-01 15 54306804 54306804 G T UNC13C Missense_Mutation p.Q568H 0.12 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-63-A5MM-01 15 56208272 56208272 C T NEDD4 Missense_Mutation p.S253N 0.23 tolerated_low_confidence(0.24) benign(0.002) TCGA-63-A5MM-01 15 57730522 57730522 G A CGNL1 Missense_Mutation p.A109T 0.18 tolerated(0.16) benign(0.01) TCGA-63-A5MM-01 15 60297396 60297396 G A FOXB1 Silent p.P78P 0.18 TCGA-63-A5MM-01 15 60297597 60297597 G A FOXB1 Silent p.T145T 0.30 TCGA-63-A5MM-01 15 65369925 65369925 G A KBTBD13 Missense_Mutation p.G258S 0.33 deleterious(0.01) probably_damaging(0.962) TCGA-63-A5MM-01 15 65411728 65411728 C T PDCD7 Silent p.A440A 0.23 TCGA-63-A5MM-01 15 65489544 65489544 A T CILP Missense_Mutation p.V1027D 0.17 deleterious(0) possibly_damaging(0.639) TCGA-63-A5MM-01 15 66190401 66190401 G A MEGF11 Silent p.C1002C 0.09 TCGA-63-A5MM-01 15 73996790 73996790 C T CD276 Missense_Mutation p.A449V 0.24 tolerated(0.1) benign(0.322) TCGA-63-A5MM-01 15 74636266 74636266 C T CYP11A1 Silent p.Q231Q 0.14 TCGA-63-A5MM-01 15 75901977 75901977 A G SNUPN Missense_Mutation p.Y142H 0.07 deleterious(0.04) possibly_damaging(0.499) TCGA-63-A5MM-01 15 76019478 76019478 A G ODF3L1 Missense_Mutation p.Y141C 0.11 deleterious(0) probably_damaging(0.984) TCGA-63-A5MM-01 15 78894361 78894361 G A CHRNA3 Missense_Mutation p.A208V 0.27 tolerated(0.99) benign(0.02) TCGA-63-A5MM-01 15 81172099 81172099 G A KIAA1199 Missense_Mutation p.R95Q 0.13 tolerated(0.06) possibly_damaging(0.795) TCGA-63-A5MM-01 15 81241116 81241116 G A KIAA1199 Intron 0.09 TCGA-63-A5MM-01 15 81295288 81295288 T C MESDC1 Missense_Mutation p.S226P 0.16 deleterious(0.04) possibly_damaging(0.563) TCGA-63-A5MM-01 15 83440933 83440933 C A FSD2 Missense_Mutation p.G387C 0.21 deleterious(0) probably_damaging(0.997) TCGA-63-A5MM-01 15 84657469 84657469 T A ADAMTSL3 Missense_Mutation p.I1248K 0.18 deleterious(0) possibly_damaging(0.58) TCGA-63-A5MM-01 15 88476269 88476269 C T NTRK3 Silent p.K621K 0.11 TCGA-63-A5MM-01 15 89386735 89386735 G A ACAN Missense_Mutation p.A303T 0.17 deleterious(0) unknown(0) TCGA-63-A5MM-01 15 90342731 90342731 T C ANPEP Missense_Mutation p.T627A 0.08 tolerated(0.06) benign(0.196) TCGA-63-A5MM-01 15 91424579 91424579 C - FURIN Frame_Shift_Del p.Q621Kfs*36 0.19 TCGA-63-A5MM-01 15 91517384 91517384 T C PRC1 Silent p.T481T 0.14 TCGA-63-A5MM-01 15 91528044 91528044 G A PRC1 Missense_Mutation p.A8V 0.17 deleterious(0.05) benign(0.127) TCGA-63-A5MM-01 15 91557070 91557071 - C VPS33B Frame_Shift_Ins p.T108Nfs*17 0.10 TCGA-63-A5MM-01 15 92706420 92706420 A - SLCO3A1 3'UTR 0.18 TCGA-63-A5MM-01 16 1143699 1143699 C T C1QTNF8 Silent p.R187R 0.14 TCGA-63-A5MM-01 16 1364303 1364303 G A UBE2I Missense_Mutation p.A26T 0.15 deleterious(0.01) probably_damaging(0.951) TCGA-63-A5MM-01 16 1793379 1793379 G A MAPK8IP3 Missense_Mutation p.G216S 0.09 tolerated(0.22) benign(0.01) TCGA-63-A5MM-01 16 1816747 1816747 C T MAPK8IP3 Missense_Mutation p.A987V 0.10 deleterious(0.01) benign(0.039) TCGA-63-A5MM-01 16 1818251 1818251 T A MAPK8IP3 Missense_Mutation p.I1204N 0.13 deleterious(0) probably_damaging(0.959) TCGA-63-A5MM-01 16 19580887 19580887 G T C16orf62 Missense_Mutation p.D176Y 0.10 deleterious(0) possibly_damaging(0.576) TCGA-63-A5MM-01 16 2028695 2028695 G T TBL3 3'UTR 0.15 TCGA-63-A5MM-01 16 20352508 20352508 G A UMOD Silent p.G494G 0.23 TCGA-63-A5MM-01 16 20357483 20357483 G A UMOD Missense_Mutation p.P383S 0.15 tolerated(0.08) probably_damaging(0.956) TCGA-63-A5MM-01 16 2131787 2131787 C T TSC2 Missense_Mutation p.R1268C 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-63-A5MM-01 16 23080308 23080308 G A USP31 Missense_Mutation p.R1040W 0.19 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-63-A5MM-01 16 24802071 24802071 T C TNRC6A Missense_Mutation p.L703S 0.07 tolerated(0.55) benign(0.027) TCGA-63-A5MM-01 16 24918085 24918085 G T SLC5A11 Missense_Mutation p.G372W 0.11 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 16 24942184 24942184 G T ARHGAP17 Silent p.P812P 0.16 TCGA-63-A5MM-01 16 2503224 2503224 G A CCNF Missense_Mutation p.A501T 0.22 tolerated(0.09) benign(0.311) TCGA-63-A5MM-01 16 25255464 25255464 G A ZKSCAN2 Silent p.C541C 0.14 TCGA-63-A5MM-01 16 28601685 28601685 C A CCDC101 Missense_Mutation p.A163D 0.20 deleterious(0) probably_damaging(0.993) TCGA-63-A5MM-01 16 28845927 28845927 G A ATXN2L Silent p.T782T 0.17 TCGA-63-A5MM-01 16 29899971 29899971 C T SEZ6L2 Missense_Mutation p.G310D 0.25 deleterious(0) probably_damaging(0.999) TCGA-63-A5MM-01 16 30365247 30365247 T G CD2BP2 Missense_Mutation p.D117A 0.12 deleterious(0.01) probably_damaging(0.962) TCGA-63-A5MM-01 16 30793315 30793315 G A ZNF629 Silent p.L778L 0.16 TCGA-63-A5MM-01 16 30941652 30941652 C T FBXL19 Missense_Mutation p.R370W 0.13 deleterious(0.01) probably_damaging(0.945) TCGA-63-A5MM-01 16 30982706 30982706 C T SETD1A Silent p.D1008D 0.13 TCGA-63-A5MM-01 16 31235619 31235619 G A TRIM72 Missense_Mutation p.R326H 0.21 tolerated(0.06) benign(0.125) TCGA-63-A5MM-01 16 4659770 4659770 C - UBALD1 Frame_Shift_Del p.G133Afs*91 0.10 TCGA-63-A5MM-01 16 47162348 47162348 G A NETO2 Silent p.G123G 0.11 TCGA-63-A5MM-01 16 47345313 47345313 A G ITFG1 Missense_Mutation p.V303A 0.17 deleterious(0.01) benign(0.051) TCGA-63-A5MM-01 16 48139200 48139200 C T ABCC12 Silent p.A841A 0.21 TCGA-63-A5MM-01 16 48167617 48167617 C T ABCC12 Missense_Mutation p.R370H 0.20 tolerated(0.46) benign(0.002) TCGA-63-A5MM-01 16 48576721 48576721 T C N4BP1 3'UTR 0.23 TCGA-63-A5MM-01 16 4934603 4934603 C T PPL Silent p.V1351V 0.17 TCGA-63-A5MM-01 16 50659414 50659414 T A NKD1 Missense_Mutation p.S129T 0.18 deleterious(0) probably_damaging(0.996) TCGA-63-A5MM-01 16 57509509 57509509 C T DOK4 Silent p.K66K 0.39 TCGA-63-A5MM-01 16 57794296 57794296 C T KIFC3 Silent p.T755T 0.20 TCGA-63-A5MM-01 16 57918043 57918043 C T CNGB1 3'UTR 0.13 TCGA-63-A5MM-01 16 58071416 58071416 G A MMP15 Missense_Mutation p.R68H 0.15 tolerated(0.6) benign(0.258) TCGA-63-A5MM-01 16 65016182 65016183 - T CDH11 Frame_Shift_Ins p.R341Kfs*4 0.09 TCGA-63-A5MM-01 16 66434902 66434902 G A CDH5 Missense_Mutation p.C607Y 0.17 deleterious(0) probably_damaging(0.987) TCGA-63-A5MM-01 16 67316187 67316187 G - PLEKHG4 Frame_Shift_Del p.G398Afs*4 0.11 TCGA-63-A5MM-01 16 67434918 67434918 G A ZDHHC1 Nonsense_Mutation p.R124* 0.19 TCGA-63-A5MM-01 16 67470202 67470202 G A HSD11B2 Missense_Mutation p.V239M 0.18 tolerated(0.19) benign(0.017) TCGA-63-A5MM-01 16 67917942 67917942 G A EDC4 Missense_Mutation p.R1366H 0.15 deleterious(0.03) possibly_damaging(0.871) TCGA-63-A5MM-01 16 67984942 67984942 C T SLC12A4 Missense_Mutation p.R442H 0.12 deleterious(0) probably_damaging(0.979) TCGA-63-A5MM-01 16 682920 682920 G A WFIKKN1 Silent p.P170P 0.23 TCGA-63-A5MM-01 16 68391126 68391126 G A PRMT7 Silent p.%3D 0.14 TCGA-63-A5MM-01 16 68857521 68857521 C T CDH1 Missense_Mutation p.A719V 0.25 tolerated(0.52) benign(0.126) TCGA-63-A5MM-01 16 69349972 69349972 C T VPS4A Missense_Mutation p.A28V 0.16 deleterious(0) probably_damaging(0.997) TCGA-63-A5MM-01 16 69832690 69832690 G A WWP2 Missense_Mutation p.R59H 0.10 tolerated(0.58) benign(0.403) TCGA-63-A5MM-01 16 71895764 71895764 G A ZNF821 Missense_Mutation p.R167C 0.15 deleterious(0) probably_damaging(0.999) TCGA-63-A5MM-01 16 72822330 72822330 G A ZFHX3 Missense_Mutation p.A3282V 0.12 unknown(0) TCGA-63-A5MM-01 16 72991508 72991508 C T ZFHX3 Missense_Mutation p.R846H 0.23 probably_damaging(0.991) TCGA-63-A5MM-01 16 72993730 72993730 C T ZFHX3 Silent p.P105P 0.14 TCGA-63-A5MM-01 16 73127099 73127099 G A HCCAT5 RNA 0.19 TCGA-63-A5MM-01 16 74452108 74452108 C T CLEC18B Missense_Mutation p.R102H 0.27 tolerated(0.42) benign(0.002) TCGA-63-A5MM-01 16 74525031 74525031 C A GLG1 Missense_Mutation p.E439D 0.18 tolerated(0.16) possibly_damaging(0.664) TCGA-63-A5MM-01 16 74990445 74990445 G A WDR59 Silent p.R56R 0.08 TCGA-63-A5MM-01 16 75269290 75269290 C T BCAR1 Missense_Mutation p.D549N 0.27 tolerated(0.18) probably_damaging(0.998) TCGA-63-A5MM-01 16 77759391 77759391 T A NUDT7 Silent p.S33S 0.14 TCGA-63-A5MM-01 16 780885 780885 G A NARFL Missense_Mutation p.R384C 0.14 deleterious(0) probably_damaging(0.953) TCGA-63-A5MM-01 16 85667620 85667620 C T GSE1 Silent p.G36G 0.19 TCGA-63-A5MM-01 16 87678575 87678575 G A JPH3 Missense_Mutation p.R365H 0.19 tolerated(0.1) benign(0.259) TCGA-63-A5MM-01 16 88599055 88599055 C T ZFPM1 Missense_Mutation p.S327L 0.31 deleterious(0) probably_damaging(0.992) TCGA-63-A5MM-01 16 88779041 88779041 G T CTU2 Silent p.L155L 0.08 TCGA-63-A5MM-01 16 89715814 89715814 G A CHMP1A Missense_Mutation p.A66V 0.18 deleterious(0) possibly_damaging(0.875) TCGA-63-A5MM-01 16 89952305 89952305 G A TCF25 Missense_Mutation p.S160N 0.13 tolerated(0.2) benign(0.006) TCGA-63-A5MM-01 16 90099232 90099232 G A GAS8 Missense_Mutation p.R132H 0.19 tolerated(0.58) benign(0.003) TCGA-63-A5MM-01 16 9857286 9857286 C A GRIN2A Missense_Mutation p.R1372M 0.16 tolerated(0.05) possibly_damaging(0.705) TCGA-63-A5MM-01 16 9857804 9857804 C T GRIN2A Silent p.P1199P 0.15 TCGA-63-A5MM-01 17 10358370 10358370 C T MYH4 Missense_Mutation p.G775R 0.16 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 17 10411773 10411773 C T MYH1 Missense_Mutation p.D602N 0.24 deleterious(0) possibly_damaging(0.73) TCGA-63-A5MM-01 17 11774984 11774984 A G DNAH9 Missense_Mutation p.T3375A 0.10 benign(0.098) TCGA-63-A5MM-01 17 12905781 12905781 G - ELAC2 Frame_Shift_Del p.L399Cfs*49 0.23 TCGA-63-A5MM-01 17 13399593 13399593 C T HS3ST3A1 Missense_Mutation p.R381H 0.09 tolerated(0.16) benign(0.002) TCGA-63-A5MM-01 17 1373490 1373490 C T MYO1C Silent p.T835T 0.26 TCGA-63-A5MM-01 17 15965493 15965493 T C NCOR1 Silent p.R1771R 0.08 TCGA-63-A5MM-01 17 16855780 16855780 C T TNFRSF13B Missense_Mutation p.R60H 0.14 tolerated(0.1) benign(0.14) TCGA-63-A5MM-01 17 17697969 17697969 C T RAI1 Silent p.D569D 0.14 TCGA-63-A5MM-01 17 17700928 17700928 C T RAI1 Missense_Mutation p.R1556C 0.16 deleterious(0) possibly_damaging(0.856) TCGA-63-A5MM-01 17 17919422 17919422 G A LRRC48 Silent p.S457S 0.15 TCGA-63-A5MM-01 17 18023765 18023765 G A MYO15A Missense_Mutation p.A551T 0.47 possibly_damaging(0.499) TCGA-63-A5MM-01 17 18154585 18154585 C T FLII Silent p.V530V 0.16 TCGA-63-A5MM-01 17 18647507 18647507 C T FBXW10 5'UTR 0.10 TCGA-63-A5MM-01 17 1940135 1940135 G A DPH1 Missense_Mutation p.A194T 0.11 tolerated(0.09) possibly_damaging(0.487) TCGA-63-A5MM-01 17 21101923 21101923 G A TMEM11 Missense_Mutation p.A98V 0.16 tolerated(0.59) benign(0.006) TCGA-63-A5MM-01 17 21319847 21319847 G A KCNJ12 Missense_Mutation p.G398D 0.12 tolerated(0.18) benign(0.014) TCGA-63-A5MM-01 17 2577568 2577568 G A PAFAH1B1 Missense_Mutation p.A296T 0.18 tolerated(0.08) benign(0.065) TCGA-63-A5MM-01 17 263146 263146 G A C17orf97 Missense_Mutation p.R171H 0.15 tolerated_low_confidence(0.07) probably_damaging(0.984) TCGA-63-A5MM-01 17 27030803 27030803 C T PROCA1 Missense_Mutation p.A262T 0.22 tolerated_low_confidence(0.26) benign(0.044) TCGA-63-A5MM-01 17 27957891 27957892 - T SSH2 Frame_Shift_Ins p.R1414Tfs*8 0.11 TCGA-63-A5MM-01 17 29162166 29162166 C G ATAD5 Missense_Mutation p.S356C 0.15 deleterious(0.01) possibly_damaging(0.886) TCGA-63-A5MM-01 17 29654694 29654694 G T NF1 Nonsense_Mutation p.E1816* 0.13 TCGA-63-A5MM-01 17 29663826 29663827 - A NF1 Frame_Shift_Ins p.T2108Nfs*12 0.15 TCGA-63-A5MM-01 17 33281500 33281500 G A CCT6B Missense_Mutation p.A152V 0.17 deleterious(0.04) possibly_damaging(0.621) TCGA-63-A5MM-01 17 33749335 33749335 A C SLFN12 Missense_Mutation p.F238C 0.19 deleterious(0) probably_damaging(0.999) TCGA-63-A5MM-01 17 34077163 34077163 G - GAS2L2 Frame_Shift_Del p.P187Rfs*28 0.26 TCGA-63-A5MM-01 17 34415939 34415939 G A CCL3 3'UTR 0.10 TCGA-63-A5MM-01 17 3448479 3448479 T A TRPV3 Missense_Mutation p.D69V 0.16 deleterious(0) probably_damaging(0.999) TCGA-63-A5MM-01 17 36872640 36872640 C A MLLT6 Missense_Mutation p.P353T 0.16 tolerated(0.06) unknown(0) TCGA-63-A5MM-01 17 36909498 36909498 G C PSMB3 Missense_Mutation p.Q33H 0.16 tolerated(0.21) probably_damaging(0.992) TCGA-63-A5MM-01 17 37817105 37817105 G A STARD3 Missense_Mutation p.V333M 0.16 deleterious(0.01) probably_damaging(0.988) TCGA-63-A5MM-01 17 37884180 37884180 C T ERBB2 Silent p.F1217F 0.15 TCGA-63-A5MM-01 17 37885833 37885833 C A MIEN1 Missense_Mutation p.S97I 0.15 tolerated(0.24) benign(0.001) TCGA-63-A5MM-01 17 38487509 38487509 C T RARA Silent p.G13G 0.15 TCGA-63-A5MM-01 17 39595062 39595062 G A KRT38 Silent p.L261L 0.15 TCGA-63-A5MM-01 17 40761345 40761345 C T FAM134C 5'UTR 0.29 TCGA-63-A5MM-01 17 40844689 40844689 G A CNTNAP1 Missense_Mutation p.M901I 0.16 tolerated(0.12) benign(0.059) TCGA-63-A5MM-01 17 41020862 41020862 G A AOC4P RNA 0.22 TCGA-63-A5MM-01 17 42153190 42153190 C T G6PC3 Missense_Mutation p.R274C 0.19 tolerated(0.1) benign(0.03) TCGA-63-A5MM-01 17 43480123 43480124 GA - ARHGAP27 Frame_Shift_Del p.S226Lfs*9 0.16 TCGA-63-A5MM-01 17 43481033 43481033 G A ARHGAP27 Silent p.G189G 0.18 TCGA-63-A5MM-01 17 43923297 43923297 G A SPPL2C Missense_Mutation p.R342H 0.17 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 17 44109601 44109601 G - KANSL1 Frame_Shift_Del p.Q968Sfs*46 0.16 TCGA-63-A5MM-01 17 4444837 4444837 G A MYBBP1A Missense_Mutation p.A1073V 0.16 tolerated(0.25) benign(0.147) TCGA-63-A5MM-01 17 44851158 44851158 C T WNT3 Missense_Mutation p.M66I 0.10 deleterious(0.02) benign(0.199) TCGA-63-A5MM-01 17 45916911 45916911 G A SCRN2 Missense_Mutation p.A152V 0.11 tolerated(0.12) benign(0.016) TCGA-63-A5MM-01 17 45925431 45925431 T C SP6 Missense_Mutation p.D122G 0.14 deleterious(0.02) probably_damaging(0.992) TCGA-63-A5MM-01 17 46050995 46050995 G A CDK5RAP3 Missense_Mutation p.A55T 0.17 tolerated(0.63) benign(0.004) TCGA-63-A5MM-01 17 4638521 4638521 T - CXCL16 Frame_Shift_Del p.N214Mfs*82 0.11 TCGA-63-A5MM-01 17 46846440 46846440 C T TTLL6 Missense_Mutation p.A863T 0.19 tolerated_low_confidence(1) benign(0.001) TCGA-63-A5MM-01 17 46863546 46863546 C T TTLL6 Missense_Mutation p.A581T 0.18 tolerated(0.5) benign(0.004) TCGA-63-A5MM-01 17 47041721 47041721 G T GIP Missense_Mutation p.Q70K 0.10 tolerated(0.59) probably_damaging(0.998) TCGA-63-A5MM-01 17 47075256 47075256 C T IGF2BP1 Missense_Mutation p.A50V 0.14 tolerated(0.17) benign(0.243) TCGA-63-A5MM-01 17 47117434 47117434 G C IGF2BP1 Missense_Mutation p.E267Q 0.16 deleterious(0) probably_damaging(0.955) TCGA-63-A5MM-01 17 47394318 47394318 C T ZNF652 Missense_Mutation p.R257H 0.18 deleterious(0.02) benign(0.329) TCGA-63-A5MM-01 17 47799954 47799954 C T FAM117A Silent p.T123T 0.15 TCGA-63-A5MM-01 17 48626755 48626755 G A SPATA20 Missense_Mutation p.A257T 0.14 tolerated(0.67) benign(0.01) TCGA-63-A5MM-01 17 48652991 48652991 C T CACNA1G Missense_Mutation p.R410W 0.17 deleterious(0) possibly_damaging(0.834) TCGA-63-A5MM-01 17 4873787 4873787 C T CAMTA2 Silent p.P974P 0.10 TCGA-63-A5MM-01 17 48753732 48753732 G A ABCC3 Missense_Mutation p.R1054H 0.20 tolerated(0.23) benign(0.01) TCGA-63-A5MM-01 17 4927082 4927082 G A KIF1C Missense_Mutation p.S983N 0.19 deleterious_low_confidence(0.03) possibly_damaging(0.483) TCGA-63-A5MM-01 17 55962796 55962796 G A CUEDC1 Missense_Mutation p.R44C 0.15 deleterious(0) probably_damaging(0.978) TCGA-63-A5MM-01 17 57466733 57466733 C T YPEL2 Silent p.G58G 0.16 TCGA-63-A5MM-01 17 58233999 58233999 A T CA4 Missense_Mutation p.D64V 0.14 deleterious(0) probably_damaging(0.952) TCGA-63-A5MM-01 17 58506749 58506749 G A C17orf64 Silent p.P152P 0.14 TCGA-63-A5MM-01 17 58740749 58740749 C T PPM1D Nonsense_Mutation p.R552* 0.08 TCGA-63-A5MM-01 17 59482855 59482855 G A TBX2 Silent p.A448A 0.60 TCGA-63-A5MM-01 17 60759282 60759282 C T MRC2 Silent p.Y929Y 0.17 TCGA-63-A5MM-01 17 61574561 61574561 C T ACE Missense_Mutation p.A1252V 0.33 deleterious(0.04) benign(0.069) TCGA-63-A5MM-01 17 65146093 65146094 - A HELZ Frame_Shift_Ins p.T789Yfs*7 0.16 TCGA-63-A5MM-01 17 65689062 65689062 T A PITPNC1 3'UTR 0.30 TCGA-63-A5MM-01 17 66416599 66416599 G A ARSG Missense_Mutation p.A525T 0.09 deleterious_low_confidence(0.02) benign(0.218) TCGA-63-A5MM-01 17 66925285 66925285 G T ABCA8 Missense_Mutation p.L344M 0.19 deleterious(0.03) probably_damaging(0.998) TCGA-63-A5MM-01 17 67111594 67111594 G A ABCA6 Missense_Mutation p.T510M 0.14 deleterious(0) probably_damaging(0.999) TCGA-63-A5MM-01 17 6930945 6930945 G A BCL6B 3'UTR 0.14 TCGA-63-A5MM-01 17 70119767 70119767 C T SOX9 Missense_Mutation p.R257C 0.20 deleterious(0) probably_damaging(0.966) TCGA-63-A5MM-01 17 7093987 7093987 G A DLG4 3'UTR 0.12 TCGA-63-A5MM-01 17 72308360 72308360 G A DNAI2 Silent p.T571T 0.25 TCGA-63-A5MM-01 17 72338797 72338797 G A KIF19 Missense_Mutation p.S87N 0.09 tolerated(0.61) benign(0.016) TCGA-63-A5MM-01 17 7323776 7323776 C A SPEM1 Missense_Mutation p.L25M 0.21 tolerated(0.12) possibly_damaging(0.698) TCGA-63-A5MM-01 17 73624488 73624488 C T RECQL5 Missense_Mutation p.R872H 0.12 tolerated(0.06) benign(0.033) TCGA-63-A5MM-01 17 73646823 73646823 C T RECQL5 Intron 0.17 TCGA-63-A5MM-01 17 7365271 7365271 G A ZBTB4 Silent p.G1010G 0.11 TCGA-63-A5MM-01 17 73720855 73720855 G A ITGB4 Silent p.G24G 0.15 TCGA-63-A5MM-01 17 73946935 73946935 A G ACOX1 Silent p.G406G 0.14 TCGA-63-A5MM-01 17 7415198 7415198 C T POLR2A Silent p.G1390G 0.07 TCGA-63-A5MM-01 17 74287206 74287206 C T QRICH2 Missense_Mutation p.G1035E 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-63-A5MM-01 17 74387227 74387227 C T UBE2O Missense_Mutation p.A1226T 0.21 tolerated_low_confidence(0.44) benign(0.001) TCGA-63-A5MM-01 17 74394424 74394424 G A UBE2O Missense_Mutation p.A646V 0.16 tolerated(0.07) benign(0.219) TCGA-63-A5MM-01 17 7484219 7484219 A T CD68 Missense_Mutation p.T256S 0.14 tolerated(0.09) benign(0.159) TCGA-63-A5MM-01 17 75190787 75190787 G A SEC14L1 Missense_Mutation p.R168H 0.14 tolerated(0.08) benign(0.004) TCGA-63-A5MM-01 17 7852728 7852728 G A CNTROB Missense_Mutation p.R893H 0.15 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-63-A5MM-01 17 79429993 79429993 C T RP11-1055B8.7 Silent p.C2537C 0.19 TCGA-63-A5MM-01 17 7951929 7951929 G A ALOX15B 3'UTR 0.19 TCGA-63-A5MM-01 17 79632240 79632240 G A OXLD1 Silent p.C145C 0.19 TCGA-63-A5MM-01 17 8397130 8397132 TTC - MYH10 In_Frame_Del p.K1376del 0.15 TCGA-63-A5MM-01 17 8736349 8736349 C T PIK3R6 Missense_Mutation p.R220H 0.18 tolerated(0.18) benign(0.001) TCGA-63-A5MM-01 18 18622655 18622655 A G ROCK1 Missense_Mutation p.C231R 0.38 deleterious(0.02) probably_damaging(0.935) TCGA-63-A5MM-01 18 19997365 19997365 G A CTAGE1 Missense_Mutation p.A137V 0.19 tolerated(0.28) benign(0.019) TCGA-63-A5MM-01 18 23618517 23618517 A G SS18 Splice_Site p.X294_splice 0.08 TCGA-63-A5MM-01 18 2732401 2732401 G A SMCHD1 Missense_Mutation p.G1063S 0.09 deleterious(0.01) probably_damaging(1) TCGA-63-A5MM-01 18 29850300 29850300 C T GAREM Missense_Mutation p.R538Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-63-A5MM-01 18 33552798 33552798 G T C18orf21 Intron 0.31 TCGA-63-A5MM-01 18 47811435 47811435 G A CXXC1 Silent p.D283D 0.41 TCGA-63-A5MM-01 18 5891806 5891806 C - TMEM200C Frame_Shift_Del p.G86Vfs*176 0.12 TCGA-63-A5MM-01 18 641484 641484 G T CLUL1 Missense_Mutation p.W384C 0.33 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 18 697332 697332 C T ENOSF1 Missense_Mutation p.A94T 0.12 tolerated(0.18) benign(0.087) TCGA-63-A5MM-01 18 74092158 74092158 C T ZNF516 Missense_Mutation p.D638N 0.29 tolerated(0.43) benign(0.004) TCGA-63-A5MM-01 18 74639294 74639294 C T ZNF236 Missense_Mutation p.T1410M 0.26 deleterious(0) possibly_damaging(0.684) TCGA-63-A5MM-01 18 77171131 77171131 T C NFATC1 Missense_Mutation p.S273P 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-63-A5MM-01 18 77513730 77513730 C A CTDP1 Missense_Mutation p.S942R 0.30 deleterious(0.01) probably_damaging(0.984) TCGA-63-A5MM-01 19 10404778 10404778 C T ICAM5 Missense_Mutation p.R592C 0.17 deleterious(0.01) possibly_damaging(0.513) TCGA-63-A5MM-01 19 1056970 1056970 G A ABCA7 Missense_Mutation p.A1551T 0.11 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 19 10577685 10577685 C T PDE4A Silent p.I683I 0.24 TCGA-63-A5MM-01 19 10577996 10577996 G A PDE4A Missense_Mutation p.G787D 0.16 tolerated_low_confidence(0.38) benign(0.002) TCGA-63-A5MM-01 19 1063634 1063634 C T ABCA7 Missense_Mutation p.A1935V 0.23 deleterious(0.01) benign(0.056) TCGA-63-A5MM-01 19 1081015 1081015 C T HMHA1 Silent p.C730C 0.18 TCGA-63-A5MM-01 19 11286598 11286598 C T KANK2 Missense_Mutation p.A618T 0.11 tolerated(0.12) probably_damaging(0.998) TCGA-63-A5MM-01 19 11322768 11322768 C T DOCK6 Silent p.T1517T 0.23 TCGA-63-A5MM-01 19 11577621 11577621 A G ELAVL3 Missense_Mutation p.S11P 0.43 tolerated_low_confidence(0.33) benign(0) TCGA-63-A5MM-01 19 12693713 12693713 T C ZNF490 Missense_Mutation p.K101E 0.21 tolerated(1) benign(0.003) TCGA-63-A5MM-01 19 12739391 12739391 C T ZNF791 Missense_Mutation p.H350Y 0.25 deleterious(0) probably_damaging(0.998) TCGA-63-A5MM-01 19 13008668 13008668 A G GCDH Missense_Mutation p.T412A 0.27 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-63-A5MM-01 19 13249256 13249256 T C NACC1 3'UTR 0.15 TCGA-63-A5MM-01 19 13256113 13256113 C T STX10 Missense_Mutation p.A154T 0.23 tolerated(0.36) benign(0.028) TCGA-63-A5MM-01 19 13363870 13363870 T C CACNA1A Missense_Mutation p.N1601D 0.16 possibly_damaging(0.801) TCGA-63-A5MM-01 19 13941250 13941250 G A ZSWIM4 Missense_Mutation p.E786K 0.04 deleterious(0.02) unknown(0) TCGA-63-A5MM-01 19 14520379 14520379 C T DDX39A Missense_Mutation p.A315T 0.14 tolerated(0.12) benign(0.088) TCGA-63-A5MM-01 19 14593518 14593518 G A GIPC1 Missense_Mutation p.R91C 0.13 tolerated(0.08) benign(0.076) TCGA-63-A5MM-01 19 14675793 14675793 G A TECR Missense_Mutation p.A199T 0.14 tolerated(0.14) benign(0.005) TCGA-63-A5MM-01 19 14938443 14938443 G A OR7A5 Missense_Mutation p.A204V 0.13 tolerated_low_confidence(1) benign(0.002) TCGA-63-A5MM-01 19 15164722 15164722 C T CASP14 Missense_Mutation p.A119V 0.09 tolerated(0.1) probably_damaging(0.966) TCGA-63-A5MM-01 19 15302801 15302801 C T NOTCH3 Missense_Mutation p.D217N 0.15 tolerated(0.1) benign(0.255) TCGA-63-A5MM-01 19 15514339 15514339 C T AKAP8L Silent p.P103P 0.13 TCGA-63-A5MM-01 19 15562874 15562874 C T RASAL3 Silent p.G958G 0.16 TCGA-63-A5MM-01 19 15574920 15574920 G A RASAL3 Nonsense_Mutation p.R84* 0.22 TCGA-63-A5MM-01 19 16045079 16045079 C T CYP4F11 Missense_Mutation p.R47H 0.11 tolerated(0.15) benign(0.003) TCGA-63-A5MM-01 19 16630497 16630497 G T CHERP Missense_Mutation p.A831E 0.11 deleterious(0.04) unknown(0) TCGA-63-A5MM-01 19 17038858 17038858 C T CPAMD8 Missense_Mutation p.A1158T 0.16 tolerated(0.26) benign(0.004) TCGA-63-A5MM-01 19 17450292 17450292 C T GTPBP3 Silent p.D318D 0.20 TCGA-63-A5MM-01 19 17769005 17769005 C T UNC13A Silent p.P211P 0.12 TCGA-63-A5MM-01 19 17919039 17919039 G A B3GNT3 Silent p.L141L 0.11 TCGA-63-A5MM-01 19 18183067 18183067 C T IL12RB1 Silent p.P292P 0.12 TCGA-63-A5MM-01 19 18274154 18274154 C T PIK3R2 Missense_Mutation p.R458C 0.15 deleterious(0) benign(0.247) TCGA-63-A5MM-01 19 1828324 1828324 C T REXO1 Missense_Mutation p.S155N 0.11 deleterious(0.05) benign(0.081) TCGA-63-A5MM-01 19 18377092 18377092 G A KIAA1683 Missense_Mutation p.P420S 0.18 tolerated(0.15) benign(0.022) TCGA-63-A5MM-01 19 18507655 18507655 G A LRRC25 Missense_Mutation p.A40V 0.15 tolerated(0.08) benign(0.032) TCGA-63-A5MM-01 19 18546114 18546114 C T ISYNA1 Silent p.A478A 0.13 TCGA-63-A5MM-01 19 18684527 18684527 C T UBA52 Silent p.G53G 0.10 TCGA-63-A5MM-01 19 18971238 18971238 A G UPF1 Missense_Mutation p.Y764C 0.13 deleterious(0) probably_damaging(0.984) TCGA-63-A5MM-01 19 19043789 19043789 G A HOMER3 Silent p.S159S 0.12 TCGA-63-A5MM-01 19 19613299 19613299 G A GATAD2A Missense_Mutation p.A579T 0.18 tolerated(0.18) benign(0.001) TCGA-63-A5MM-01 19 19748731 19748731 G A GMIP Missense_Mutation p.R309W 0.13 tolerated(0.18) benign(0.013) TCGA-63-A5MM-01 19 19790013 19790013 G T ZNF101 Missense_Mutation p.G72V 0.23 deleterious(0.01) benign(0.076) TCGA-63-A5MM-01 19 1997444 1997444 G A BTBD2 Silent p.G142G 0.20 TCGA-63-A5MM-01 19 2834232 2834232 C T ZNF554 Silent p.F333F 0.05 TCGA-63-A5MM-01 19 2834415 2834415 G A ZNF554 Silent p.S394S 0.09 TCGA-63-A5MM-01 19 2851620 2851620 T A ZNF555 Missense_Mutation p.D95E 0.35 tolerated(0.1) benign(0.079) TCGA-63-A5MM-01 19 31769042 31769042 C T TSHZ3 Missense_Mutation p.A553T 0.22 deleterious(0) probably_damaging(0.998) TCGA-63-A5MM-01 19 31769941 31769941 C A TSHZ3 Missense_Mutation p.R253L 0.13 deleterious(0.01) possibly_damaging(0.801) TCGA-63-A5MM-01 19 33135299 33135299 C T ANKRD27 Missense_Mutation p.D153N 0.15 tolerated(0.06) possibly_damaging(0.539) TCGA-63-A5MM-01 19 3452529 3452529 G A NFIC Silent p.T378T 0.15 TCGA-63-A5MM-01 19 36034314 36034314 C T GAPDHS Missense_Mutation p.R272W 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.698) TCGA-63-A5MM-01 19 36054148 36054148 G A ATP4A Missense_Mutation p.A60V 0.12 deleterious(0.02) benign(0.035) TCGA-63-A5MM-01 19 36230225 36230225 G A IGFLR1 Missense_Mutation p.R342W 0.17 deleterious(0.02) possibly_damaging(0.648) TCGA-63-A5MM-01 19 38572374 38572374 G A SIPA1L3 Missense_Mutation p.A57T 0.14 tolerated(0.32) possibly_damaging(0.614) TCGA-63-A5MM-01 19 39051932 39051932 G A RYR1 Silent p.P4154P 0.16 TCGA-63-A5MM-01 19 39517587 39517587 C T FBXO27 Missense_Mutation p.A211T 0.11 deleterious(0.03) possibly_damaging(0.713) TCGA-63-A5MM-01 19 39805730 39805730 G A LRFN1 Nonsense_Mutation p.R83* 0.26 TCGA-63-A5MM-01 19 39962284 39962284 G A SUPT5H Missense_Mutation p.A622T 0.15 deleterious(0.02) probably_damaging(0.941) TCGA-63-A5MM-01 19 40325367 40325367 C A FBL Missense_Mutation p.Q294H 0.20 tolerated(0.13) possibly_damaging(0.841) TCGA-63-A5MM-01 19 40540727 40540727 C T ZNF780B Missense_Mutation p.R680H 0.10 tolerated(0.64) benign(0) TCGA-63-A5MM-01 19 40877594 40877594 C T PLD3 Silent p.G231G 0.14 TCGA-63-A5MM-01 19 41083493 41083493 G A SHKBP1 Missense_Mutation p.A73T 0.13 tolerated(0.15) benign(0.066) TCGA-63-A5MM-01 19 41809992 41809992 G A HNRNPUL1 Silent p.P696P 0.21 TCGA-63-A5MM-01 19 41897762 41897762 A G EXOSC5 Missense_Mutation p.V123A 0.12 deleterious(0.01) benign(0.181) TCGA-63-A5MM-01 19 42224895 42224895 G A CEACAM5 Missense_Mutation p.A609T 0.17 tolerated(0.78) possibly_damaging(0.772) TCGA-63-A5MM-01 19 42857754 42857754 C T MEGF8 Missense_Mutation p.L1163F 0.25 tolerated(0.1) possibly_damaging(0.689) TCGA-63-A5MM-01 19 42893104 42893104 G A CNFN Missense_Mutation p.T29M 0.16 tolerated(0.22) benign(0.001) TCGA-63-A5MM-01 19 42946920 42946920 C T CXCL17 Missense_Mutation p.S22N 0.16 tolerated_low_confidence(0.06) unknown(0) TCGA-63-A5MM-01 19 43098947 43098947 G A CEACAM8 Missense_Mutation p.R12C 0.13 tolerated(0.25) benign(0.004) TCGA-63-A5MM-01 19 43237095 43237095 C A PSG3 Missense_Mutation p.G184C 0.16 deleterious(0.02) probably_damaging(1) TCGA-63-A5MM-01 19 43372974 43372974 A G PSG1 Missense_Mutation p.Y308H 0.17 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 19 44470858 44470858 A G ZNF221 Missense_Mutation p.T402A 0.13 tolerated(0.06) benign(0.012) TCGA-63-A5MM-01 19 44611503 44611503 A G ZNF224 Missense_Mutation p.E397G 0.16 deleterious(0) probably_damaging(0.959) TCGA-63-A5MM-01 19 44732650 44732650 C T ZNF227 Nonsense_Mutation p.R38* 0.11 TCGA-63-A5MM-01 19 4511616 4511616 C T PLIN4 Missense_Mutation p.D772N 0.09 tolerated(0.06) benign(0.049) TCGA-63-A5MM-01 19 45923592 45923592 G T ERCC1 Missense_Mutation p.L139M 0.43 deleterious(0.02) possibly_damaging(0.892) TCGA-63-A5MM-01 19 46417694 46417694 G A NANOS2 Silent p.G86G 0.18 TCGA-63-A5MM-01 19 48184018 48184018 G A GLTSCR1 Missense_Mutation p.A531T 0.10 unknown(0) TCGA-63-A5MM-01 19 48248889 48248889 C T GLTSCR2 Silent p.L25L 0.12 TCGA-63-A5MM-01 19 48800413 48800413 G A CCDC114 Silent p.G611G 0.11 TCGA-63-A5MM-01 19 48946608 48946608 C T GRIN2D Missense_Mutation p.A1142V 0.17 tolerated_low_confidence(0.1) unknown(0) TCGA-63-A5MM-01 19 49001543 49001543 A G LMTK3 Missense_Mutation p.V957A 0.08 unknown(0) TCGA-63-A5MM-01 19 49142268 49142268 T A CA11 Missense_Mutation p.I280F 0.18 tolerated(0.08) probably_damaging(0.992) TCGA-63-A5MM-01 19 49206444 49206444 C T FUT2 Silent p.G77G 0.12 TCGA-63-A5MM-01 19 49404117 49404117 C T NUCB1 Missense_Mutation p.R22C 0.17 tolerated(0.15) benign(0.183) TCGA-63-A5MM-01 19 49797156 49797156 T C SLC6A16 Missense_Mutation p.I516V 0.06 tolerated(0.17) benign(0.145) TCGA-63-A5MM-01 19 50099026 50099026 C - PRR12 Frame_Shift_Del p.P480Hfs*111 0.17 TCGA-63-A5MM-01 19 50103174 50103174 G A PRR12 Missense_Mutation p.A1442T 0.15 possibly_damaging(0.682) TCGA-63-A5MM-01 19 50331796 50331796 C T MED25 Silent p.R132R 0.12 TCGA-63-A5MM-01 19 50412556 50412556 C A NUP62 Missense_Mutation p.G170V 0.15 tolerated(0.07) possibly_damaging(0.796) TCGA-63-A5MM-01 19 5047576 5047576 G A KDM4B Silent p.T174T 0.20 TCGA-63-A5MM-01 19 50666296 50666296 G A IZUMO2 Silent p.R52R 0.25 TCGA-63-A5MM-01 19 50764838 50764838 T A MYH14 Missense_Mutation p.V844D 0.21 deleterious(0) possibly_damaging(0.863) TCGA-63-A5MM-01 19 51301472 51301472 C T C19orf48 Silent p.G78G 0.10 TCGA-63-A5MM-01 19 51361775 51361775 C T KLK3 Missense_Mutation p.A185V 0.15 tolerated(0.26) benign(0.025) TCGA-63-A5MM-01 19 51503733 51503733 G A KLK8 Silent p.G104G 0.15 TCGA-63-A5MM-01 19 51525880 51525880 G A KLK11 Missense_Mutation p.A257V 0.20 deleterious(0.02) probably_damaging(0.987) TCGA-63-A5MM-01 19 5225784 5225784 G A PTPRS Silent p.G816G 0.18 TCGA-63-A5MM-01 19 52496650 52496650 C T ZNF615 Missense_Mutation p.R571H 0.17 deleterious(0) probably_damaging(0.999) TCGA-63-A5MM-01 19 52537283 52537283 A T ZNF432 Missense_Mutation p.F550Y 0.10 deleterious(0.03) probably_damaging(0.995) TCGA-63-A5MM-01 19 52723067 52723067 C T PPP2R1A Missense_Mutation p.R418W 0.25 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 19 5286146 5286146 C T PTPRS Silent p.A2A 0.24 TCGA-63-A5MM-01 19 53668521 53668521 C T ZNF665 Missense_Mutation p.V408I 0.11 deleterious(0) benign(0.003) TCGA-63-A5MM-01 19 54219879 54219879 T C MIR521-2 RNA 0.11 TCGA-63-A5MM-01 19 54314359 54314359 C A NLRP12 Missense_Mutation p.R185M 0.12 deleterious(0.04) possibly_damaging(0.64) TCGA-63-A5MM-01 19 54445682 54445682 G A CACNG7 3'UTR 0.17 TCGA-63-A5MM-01 19 54561685 54561685 T - VSTM1 Frame_Shift_Del p.N77Tfs*10 0.11 TCGA-63-A5MM-01 19 54677944 54677944 G A MBOAT7 Missense_Mutation p.R405C 0.12 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 19 55854171 55854171 G A SUV420H2 Missense_Mutation p.R113H 0.23 deleterious(0) probably_damaging(0.933) TCGA-63-A5MM-01 19 56203251 56203251 C - EPN1 Frame_Shift_Del p.P386Lfs*142 0.16 TCGA-63-A5MM-01 19 57293430 57293430 C A ZIM2 Missense_Mutation p.E179D 0.07 deleterious(0.04) possibly_damaging(0.498) TCGA-63-A5MM-01 19 57325738 57325738 C G PEG3 Missense_Mutation p.E1358Q 0.26 tolerated(0.07) benign(0.382) TCGA-63-A5MM-01 19 57335768 57335768 T C PEG3 Missense_Mutation p.I86V 0.14 tolerated(0.27) benign(0.008) TCGA-63-A5MM-01 19 57642326 57642326 G T USP29 Missense_Mutation p.Q761H 0.14 deleterious(0.01) probably_damaging(0.917) TCGA-63-A5MM-01 19 57803343 57803343 C T ZNF460 Silent p.C478C 0.12 TCGA-63-A5MM-01 19 58016110 58016110 A G ZNF773 Missense_Mutation p.Y40C 0.08 deleterious(0.01) benign(0.086) TCGA-63-A5MM-01 19 58370643 58370643 G A ZNF587 Missense_Mutation p.R288Q 0.17 deleterious(0.01) benign(0.158) TCGA-63-A5MM-01 19 58868257 58868257 G T ZNF497 Silent p.R249R 0.31 TCGA-63-A5MM-01 19 58967961 58967961 G A ZNF324B 3'UTR 0.17 TCGA-63-A5MM-01 19 6466561 6466561 C T CRB3 Missense_Mutation p.R81W 0.19 deleterious(0.04) benign(0) TCGA-63-A5MM-01 19 731160 731160 C T PALM Missense_Mutation p.A112V 0.31 tolerated(0.63) benign(0.005) TCGA-63-A5MM-01 19 7591385 7591385 G A MCOLN1 Missense_Mutation p.A100T 0.17 tolerated(0.39) benign(0.05) TCGA-63-A5MM-01 19 8188771 8188771 G A FBN3 Silent p.C951C 0.24 TCGA-63-A5MM-01 19 8651710 8651711 GA - ADAMTS10 Frame_Shift_Del p.L743Qfs*52 0.13 TCGA-63-A5MM-01 19 9064310 9064310 G - MUC16 Frame_Shift_Del p.S7713Lfs*5 0.17 TCGA-63-A5MM-01 1 10363512 10363512 C T KIF1B Intron 0.07 TCGA-63-A5MM-01 1 10394639 10394639 G A KIF1B Missense_Mutation p.V950I 0.17 tolerated(0.09) probably_damaging(0.965) TCGA-63-A5MM-01 1 10719966 10719966 A G CASZ1 Missense_Mutation p.V378A 0.22 deleterious_low_confidence(0) possibly_damaging(0.889) TCGA-63-A5MM-01 1 10720112 10720112 G A CASZ1 Silent p.N329N 0.14 TCGA-63-A5MM-01 1 110304368 110304368 A G EPS8L3 Missense_Mutation p.S2P 0.16 deleterious(0) probably_damaging(0.999) TCGA-63-A5MM-01 1 110883558 110883558 C T RBM15 Missense_Mutation p.R511W 0.18 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 1 111494439 111494439 G T LRIF1 Missense_Mutation p.A356D 0.17 deleterious(0) probably_damaging(0.958) TCGA-63-A5MM-01 1 112269862 112269862 C T FAM212B Missense_Mutation p.A208T 0.14 tolerated(0.29) possibly_damaging(0.591) TCGA-63-A5MM-01 1 114225705 114225705 G A MAGI3 Missense_Mutation p.S1172N 0.09 tolerated_low_confidence(0.1) benign(0.015) TCGA-63-A5MM-01 1 114483100 114483100 A T HIPK1 Missense_Mutation p.D32V 0.14 deleterious(0.03) benign(0.013) TCGA-63-A5MM-01 1 115323266 115323266 A G SIKE1 5'UTR 0.20 TCGA-63-A5MM-01 1 11594543 11594543 C T PTCHD2 Missense_Mutation p.R1161C 0.17 deleterious(0) benign(0.28) TCGA-63-A5MM-01 1 11596434 11596434 C T PTCHD2 Silent p.G1290G 0.18 TCGA-63-A5MM-01 1 11771941 11771941 C T DRAXIN Missense_Mutation p.P226S 0.27 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 1 118424500 118424500 C A GDAP2 Splice_Site p.X416_splice 0.13 TCGA-63-A5MM-01 1 12034737 12034737 A T PLOD1 Missense_Mutation p.N686Y 0.28 deleterious(0) probably_damaging(0.992) TCGA-63-A5MM-01 1 151143102 151143102 G A TMOD4 Missense_Mutation p.A303V 0.19 tolerated(0.11) probably_damaging(0.997) TCGA-63-A5MM-01 1 151260814 151260814 C T ZNF687 Missense_Mutation p.R683W 0.15 deleterious(0.01) probably_damaging(0.929) TCGA-63-A5MM-01 1 151755447 151755447 C A TDRKH Missense_Mutation p.A18S 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-63-A5MM-01 1 152191362 152191362 G A HRNR Missense_Mutation p.R915W 0.11 unknown(0) TCGA-63-A5MM-01 1 152281822 152281822 G A FLG Missense_Mutation p.T1847M 0.09 possibly_damaging(0.791) TCGA-63-A5MM-01 1 152282697 152282697 C T FLG Silent p.R1555R 0.04 TCGA-63-A5MM-01 1 152327327 152327327 A G FLG2 Missense_Mutation p.S979P 0.03 unknown(0) TCGA-63-A5MM-01 1 152648522 152648522 C A LCE2C Missense_Mutation p.Q11K 0.16 tolerated_low_confidence(0.52) unknown(0) TCGA-63-A5MM-01 1 15392433 15392433 C T KAZN Intron 0.25 TCGA-63-A5MM-01 1 154574473 154574473 A G ADAR Silent p.G215G 0.13 TCGA-63-A5MM-01 1 154932071 154932071 G T PYGO2 Silent p.P135P 0.16 TCGA-63-A5MM-01 1 154950544 154950544 C T CKS1B Silent p.G47G 0.11 TCGA-63-A5MM-01 1 155020385 155020385 G A DCST1 Missense_Mutation p.A579T 0.12 tolerated(0.06) possibly_damaging(0.7) TCGA-63-A5MM-01 1 155026943 155026943 G A ADAM15 Silent p.K191K 0.09 TCGA-63-A5MM-01 1 155032736 155032736 G T ADAM15 Silent p.L708L 0.12 TCGA-63-A5MM-01 1 155182301 155182301 G A MTX1 Silent p.R299R 0.18 TCGA-63-A5MM-01 1 155829550 155829550 G A SYT11 5'UTR 0.16 TCGA-63-A5MM-01 1 156146751 156146751 A G SEMA4A Missense_Mutation p.D750G 0.11 tolerated(0.08) benign(0.006) TCGA-63-A5MM-01 1 1565079 1565079 G A MIB2 Missense_Mutation p.R990H 0.15 deleterious(0.02) benign(0.029) TCGA-63-A5MM-01 1 156874644 156874644 C T PEAR1 Missense_Mutation p.T69M 0.25 deleterious(0.03) benign(0.068) TCGA-63-A5MM-01 1 159035712 159035712 A - AIM2 Frame_Shift_Del p.F268Lfs*2 0.12 TCGA-63-A5MM-01 1 160057323 160057323 T C KCNJ9 Missense_Mutation p.W300R 0.21 deleterious(0) probably_damaging(0.978) TCGA-63-A5MM-01 1 160057333 160057333 G A KCNJ9 Missense_Mutation p.R303H 0.22 deleterious(0) probably_damaging(0.911) TCGA-63-A5MM-01 1 160099959 160099959 G A ATP1A2 Missense_Mutation p.R510H 0.11 deleterious(0.01) possibly_damaging(0.85) TCGA-63-A5MM-01 1 160147390 160147390 G A ATP1A4 Missense_Mutation p.G891D 0.14 deleterious(0.01) benign(0.065) TCGA-63-A5MM-01 1 160163612 160163612 A T CASQ1 Missense_Mutation p.D147V 0.15 deleterious(0) possibly_damaging(0.886) TCGA-63-A5MM-01 1 160326900 160326900 C T NCSTN Missense_Mutation p.R622C 0.18 deleterious(0) probably_damaging(0.915) TCGA-63-A5MM-01 1 16264392 16264392 T C SPEN Missense_Mutation p.V3532A 0.11 possibly_damaging(0.596) TCGA-63-A5MM-01 1 16353106 16353110 GAGGT AAGG CLCNKA Splice_Site p.X192_splice 0.11 TCGA-63-A5MM-01 1 16460962 16460962 C G EPHA2 Splice_Site p.X561_splice 0.09 TCGA-63-A5MM-01 1 16474938 16474938 C A EPHA2 Missense_Mutation p.W253L 0.10 deleterious(0) probably_damaging(0.982) TCGA-63-A5MM-01 1 16474977 16474977 C - EPHA2 Frame_Shift_Del p.G240Vfs*153 0.12 TCGA-63-A5MM-01 1 165183017 165183017 G C LMX1A Nonsense_Mutation p.S177* 0.18 TCGA-63-A5MM-01 1 165324751 165324751 C T LMX1A Missense_Mutation p.D16N 0.15 tolerated_low_confidence(0.27) benign(0.025) TCGA-63-A5MM-01 1 16535270 16535271 - C ARHGEF19 Frame_Shift_Ins p.M94Dfs*54 0.19 TCGA-63-A5MM-01 1 166818633 166818633 A G POGK Missense_Mutation p.M273V 0.16 tolerated(0.39) benign(0.079) TCGA-63-A5MM-01 1 166819255 166819255 C A POGK Missense_Mutation p.S480Y 0.08 deleterious(0) probably_damaging(0.99) TCGA-63-A5MM-01 1 167400950 167400950 C T CD247 Missense_Mutation p.A155T 0.15 deleterious(0) probably_damaging(0.951) TCGA-63-A5MM-01 1 171509839 171509839 T A PRRC2C Silent p.V1076V 0.12 TCGA-63-A5MM-01 1 17323637 17323637 G A ATP13A2 Missense_Mutation p.P358L 0.07 tolerated(0.05) possibly_damaging(0.749) TCGA-63-A5MM-01 1 173450566 173450566 T C PRDX6 Missense_Mutation p.V66A 0.17 tolerated(0.07) possibly_damaging(0.6) TCGA-63-A5MM-01 1 173912688 173912689 - G RC3H1 Frame_Shift_Ins p.P1010Tfs*14 0.11 TCGA-63-A5MM-01 1 175048612 175048612 C T TNN Missense_Mutation p.R185C 0.27 deleterious(0) benign(0.359) TCGA-63-A5MM-01 1 176668499 176668499 G A PAPPA2 Missense_Mutation p.D1004N 0.14 deleterious(0) probably_damaging(0.983) TCGA-63-A5MM-01 1 177249695 177249695 C T BRINP2 Silent p.G461G 0.17 TCGA-63-A5MM-01 1 179077451 179077451 G - ABL2 Frame_Shift_Del p.P984Hfs*6 0.16 TCGA-63-A5MM-01 1 179965821 179965821 C T CEP350 Missense_Mutation p.R177W 0.17 benign(0.3) TCGA-63-A5MM-01 1 180166105 180166105 C T QSOX1 Missense_Mutation p.A726V 0.10 tolerated(0.07) benign(0.327) TCGA-63-A5MM-01 1 180904928 180904928 C T KIAA1614 Missense_Mutation p.A628V 0.14 tolerated(0.13) possibly_damaging(0.648) TCGA-63-A5MM-01 1 180905700 180905700 A G KIAA1614 Silent p.A885A 0.28 TCGA-63-A5MM-01 1 180945776 180945776 C T STX6 Missense_Mutation p.R233H 0.15 deleterious(0.02) possibly_damaging(0.852) TCGA-63-A5MM-01 1 182369709 182369709 T C TEDDM1 5'UTR 0.29 TCGA-63-A5MM-01 1 182829129 182829129 T A DHX9 Missense_Mutation p.I381N 0.21 tolerated(0.08) benign(0.202) TCGA-63-A5MM-01 1 183083772 183083772 C T LAMC1 Silent p.G376G 0.16 TCGA-63-A5MM-01 1 183111907 183111907 G A LAMC1 Silent p.P1604P 0.16 TCGA-63-A5MM-01 1 186270782 186270782 C T PRG4 Silent p.C86C 0.15 TCGA-63-A5MM-01 1 193028616 193028616 C T UCHL5 5'UTR 0.28 TCGA-63-A5MM-01 1 19484347 19484347 G A UBR4 Missense_Mutation p.R1908C 0.18 benign(0.215) TCGA-63-A5MM-01 1 19570485 19570485 G A EMC1 Missense_Mutation p.T82M 0.12 deleterious(0.01) probably_damaging(0.912) TCGA-63-A5MM-01 1 1961672 1961672 C T GABRD Missense_Mutation p.A437V 0.16 tolerated(0.89) possibly_damaging(0.453) TCGA-63-A5MM-01 1 200977939 200977939 G A KIF21B Silent p.G135G 0.15 TCGA-63-A5MM-01 1 201617965 201617965 G A NAV1 Missense_Mutation p.A57T 0.22 tolerated(0.11) possibly_damaging(0.682) TCGA-63-A5MM-01 1 202287724 202287724 G A LGR6 Missense_Mutation p.A765T 0.15 tolerated(0.51) benign(0.084) TCGA-63-A5MM-01 1 202702824 202702824 G A KDM5B Missense_Mutation p.A1205V 0.14 deleterious(0.02) benign(0.311) TCGA-63-A5MM-01 1 203134670 203134670 G A ADORA1 Missense_Mutation p.R208H 0.19 tolerated(0.19) benign(0.008) TCGA-63-A5MM-01 1 204124178 204124178 C T REN Missense_Mutation p.R396H 0.14 tolerated(0.4) benign(0.002) TCGA-63-A5MM-01 1 20416313 20416313 C T PLA2G5 Missense_Mutation p.R73W 0.12 tolerated(0.1) benign(0.003) TCGA-63-A5MM-01 1 205632535 205632535 G A SLC45A3 Silent p.G128G 0.11 TCGA-63-A5MM-01 1 205687603 205687603 C T NUCKS1 Silent p.T179T 0.12 TCGA-63-A5MM-01 1 205719103 205719103 T C NUCKS1 5'UTR 0.23 TCGA-63-A5MM-01 1 212002494 212002494 G T LPGAT1 Missense_Mutation p.L49M 0.18 tolerated(0.13) possibly_damaging(0.472) TCGA-63-A5MM-01 1 2125085 2125085 C T C1orf86 Missense_Mutation p.A155T 0.10 tolerated(0.49) benign(0.122) TCGA-63-A5MM-01 1 212788416 212788416 C T ATF3 Missense_Mutation p.A18V 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-63-A5MM-01 1 216062130 216062130 G A USH2A Missense_Mutation p.P2621S 0.07 benign(0.126) TCGA-63-A5MM-01 1 216373287 216373287 C T USH2A Missense_Mutation p.V1165M 0.13 probably_damaging(0.961) TCGA-63-A5MM-01 1 220355692 220355692 A C RAB3GAP2 Missense_Mutation p.S739R 0.09 tolerated(0.52) benign(0.017) TCGA-63-A5MM-01 1 22170691 22170691 C T HSPG2 Missense_Mutation p.A2856T 0.19 possibly_damaging(0.6) TCGA-63-A5MM-01 1 223986173 223986173 G A TP53BP2 Silent p.S564S 0.11 TCGA-63-A5MM-01 1 226829802 226829802 C T ITPKB Silent p.T757T 0.16 TCGA-63-A5MM-01 1 227081726 227081726 T C PSEN2 Missense_Mutation p.L364P 0.10 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 1 228284831 228284831 G A ARF1 Missense_Mutation p.A6T 0.16 tolerated_low_confidence(0.17) benign(0.005) TCGA-63-A5MM-01 1 228400319 228400319 A G OBSCN Missense_Mutation p.T279A 0.15 benign(0.024) TCGA-63-A5MM-01 1 228547337 228547337 C - OBSCN Intron 0.27 TCGA-63-A5MM-01 1 228646068 228646068 C T HIST3H2BB Missense_Mutation p.R80C 0.19 tolerated_low_confidence(0.1) benign(0.047) TCGA-63-A5MM-01 1 22902829 22902829 C T EPHA8 Silent p.G93G 0.14 TCGA-63-A5MM-01 1 229730451 229730451 C T TAF5L Missense_Mutation p.A455T 0.18 tolerated(0.49) benign(0.001) TCGA-63-A5MM-01 1 231076296 231076296 A T TTC13 Missense_Mutation p.S227T 0.07 tolerated(0.2) probably_damaging(0.995) TCGA-63-A5MM-01 1 231473308 231473308 T C EXOC8 Missense_Mutation p.N62D 0.09 deleterious(0.01) probably_damaging(0.993) TCGA-63-A5MM-01 1 234519525 234519525 A G COA6 Silent p.A113A 0.14 TCGA-63-A5MM-01 1 235922805 235922805 C T LYST Silent p.T2116T 0.13 TCGA-63-A5MM-01 1 236205526 236205526 G A NID1 Silent p.G273G 0.19 TCGA-63-A5MM-01 1 23758207 23758207 T C ASAP3 Missense_Mutation p.Y843C 0.04 tolerated(0.07) possibly_damaging(0.599) TCGA-63-A5MM-01 1 2430621 2430621 C T PLCH2 Missense_Mutation p.R818C 0.19 deleterious(0) probably_damaging(0.988) TCGA-63-A5MM-01 1 247024240 247024240 C T AHCTF1 Missense_Mutation p.A1374T 0.11 tolerated(0.29) benign(0.002) TCGA-63-A5MM-01 1 247751824 247751824 G A OR2G2 Missense_Mutation p.E55K 0.13 deleterious(0) benign(0.269) TCGA-63-A5MM-01 1 247875187 247875187 T C OR6F1 Missense_Mutation p.T291A 0.15 tolerated(0.09) benign(0.117) TCGA-63-A5MM-01 1 248263376 248263376 A G OR2L13 Silent p.R233R 0.20 TCGA-63-A5MM-01 1 248685445 248685446 - C OR2G6 Frame_Shift_Ins p.L168Pfs*13 0.12 TCGA-63-A5MM-01 1 25747185 25747185 A - RHCE Frame_Shift_Del p.F31Lfs*8 0.15 TCGA-63-A5MM-01 1 27180228 27180228 G A ZDHHC18 Missense_Mutation p.R354Q 0.15 deleterious(0) probably_damaging(0.947) TCGA-63-A5MM-01 1 27734567 27734567 G A WASF2 3'UTR 0.25 TCGA-63-A5MM-01 1 28904064 28904064 G C TRNAU1AP Missense_Mutation p.Q260H 0.12 tolerated(0.23) benign(0.078) TCGA-63-A5MM-01 1 29606083 29606083 G A PTPRU Missense_Mutation p.G560D 0.17 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 1 29647239 29647239 C T PTPRU Silent p.L1254L 0.17 TCGA-63-A5MM-01 1 32796255 32796255 A T HDAC1 Missense_Mutation p.D269V 0.11 deleterious(0) probably_damaging(0.993) TCGA-63-A5MM-01 1 3427360 3427360 G A MEGF6 Silent p.G407G 0.11 TCGA-63-A5MM-01 1 35321098 35321098 C T SMIM12 3'UTR 0.13 TCGA-63-A5MM-01 1 35578941 35578941 A - ZMYM1 Frame_Shift_Del p.T506Pfs*15 0.13 TCGA-63-A5MM-01 1 36788029 36788029 G A EVA1B Missense_Mutation p.A122V 0.19 deleterious(0) probably_damaging(0.994) TCGA-63-A5MM-01 1 36859385 36859385 C T LSM10 Missense_Mutation p.E116K 0.21 tolerated_low_confidence(0.19) possibly_damaging(0.471) TCGA-63-A5MM-01 1 3782393 3782393 C T DFFB Missense_Mutation p.R87C 0.16 deleterious(0.01) benign(0.44) TCGA-63-A5MM-01 1 38040007 38040007 C T GNL2 Nonsense_Mutation p.W451* 0.15 TCGA-63-A5MM-01 1 38447422 38447422 C A SF3A3 Missense_Mutation p.R177M 0.14 tolerated(0.06) possibly_damaging(0.886) TCGA-63-A5MM-01 1 40226125 40226125 C T BMP8B Missense_Mutation p.R392H 0.17 deleterious(0.01) benign(0.122) TCGA-63-A5MM-01 1 40236245 40236245 C T OXCT2 Missense_Mutation p.R228H 0.28 deleterious(0.05) probably_damaging(0.991) TCGA-63-A5MM-01 1 41499665 41499665 A T SCMH1 Missense_Mutation p.N568K 0.22 tolerated(0.33) benign(0.002) TCGA-63-A5MM-01 1 41579057 41579057 G A SCMH1 Nonsense_Mutation p.R205* 0.22 TCGA-63-A5MM-01 1 42925370 42925370 G A PPCS Missense_Mutation p.A237T 0.19 tolerated(0.2) benign(0.003) TCGA-63-A5MM-01 1 42925448 42925448 C T PPCS Nonsense_Mutation p.R263* 0.16 TCGA-63-A5MM-01 1 45269357 45269357 G A PLK3 Silent p.R386R 0.38 TCGA-63-A5MM-01 1 45797890 45797890 C T MUTYH Missense_Mutation p.R291H 0.11 tolerated(0.36) benign(0.001) TCGA-63-A5MM-01 1 45974752 45974752 G A MMACHC Silent p.Q238Q 0.20 TCGA-63-A5MM-01 1 50659552 50659552 G A ELAVL4 Missense_Mutation p.R174H 0.20 deleterious(0.05) benign(0.017) TCGA-63-A5MM-01 1 52227568 52227568 C T OSBPL9 Missense_Mutation p.R245C 0.20 tolerated(0.08) probably_damaging(0.987) TCGA-63-A5MM-01 1 52911961 52911961 T C ZCCHC11 Missense_Mutation p.T1223A 0.17 deleterious(0) possibly_damaging(0.882) TCGA-63-A5MM-01 1 53074046 53074046 G T GPX7 Missense_Mutation p.Q171H 0.07 tolerated(0.32) benign(0) TCGA-63-A5MM-01 1 53675829 53675829 G T CPT2 Silent p.R161R 0.13 TCGA-63-A5MM-01 1 53930387 53930387 G A DMRTB1 Silent p.P276P 0.13 TCGA-63-A5MM-01 1 54060471 54060471 C T GLIS1 Silent p.A35A 0.20 TCGA-63-A5MM-01 1 55562659 55562659 C T USP24 Missense_Mutation p.A1968T 0.14 deleterious(0) probably_damaging(0.919) TCGA-63-A5MM-01 1 57409440 57409440 G T C8B Missense_Mutation p.A388D 0.20 tolerated(0.65) benign(0.008) TCGA-63-A5MM-01 1 60325931 60325931 G A HOOK1 Missense_Mutation p.R488H 0.16 deleterious(0.01) probably_damaging(0.959) TCGA-63-A5MM-01 1 6156742 6156742 G A KCNAB2 Missense_Mutation p.R332H 0.33 deleterious(0.01) possibly_damaging(0.75) TCGA-63-A5MM-01 1 64095215 64095215 C T PGM1 Silent p.G140G 0.15 TCGA-63-A5MM-01 1 65147750 65147750 C T CACHD1 Missense_Mutation p.R1132C 0.20 deleterious(0.01) possibly_damaging(0.619) TCGA-63-A5MM-01 1 68620926 68620926 G A WLS Silent p.G172G 0.19 TCGA-63-A5MM-01 1 86172138 86172138 G A ZNHIT6 Nonsense_Mutation p.R237* 0.10 TCGA-63-A5MM-01 1 89448607 89448607 C T RBMXL1 Silent p.P301P 0.18 TCGA-63-A5MM-01 1 94463634 94463634 A T ABCA4 Missense_Mutation p.I2171N 0.25 deleterious(0.02) probably_damaging(0.968) TCGA-63-A5MM-01 20 10273591 10273592 - A SNAP25 Intron 0.10 TCGA-63-A5MM-01 20 10639284 10639284 C T JAG1 Missense_Mutation p.V176I 0.11 tolerated(0.11) benign(0.006) TCGA-63-A5MM-01 20 14306546 14306546 G A FLRT3 Missense_Mutation p.A536V 0.16 tolerated(0.08) benign(0.044) TCGA-63-A5MM-01 20 18523787 18523787 C T SEC23B Missense_Mutation p.R546W 0.12 deleterious(0) probably_damaging(0.998) TCGA-63-A5MM-01 20 19941453 19941453 A T RIN2 Missense_Mutation p.Y203F 0.27 tolerated(0.42) probably_damaging(0.997) TCGA-63-A5MM-01 20 21143031 21143031 A G RP4-777D9.2 Intron 0.17 TCGA-63-A5MM-01 20 21324776 21324776 T C XRN2 Missense_Mutation p.S487P 0.11 deleterious(0.05) benign(0.006) TCGA-63-A5MM-01 20 21687122 21687122 C T PAX1 Silent p.N111N 0.07 TCGA-63-A5MM-01 20 2297787 2297787 G T TGM3 Missense_Mutation p.R248M 0.09 tolerated(0.07) probably_damaging(0.975) TCGA-63-A5MM-01 20 23860114 23860114 C T CST5 Missense_Mutation p.R67H 0.14 deleterious(0.04) possibly_damaging(0.709) TCGA-63-A5MM-01 20 25462637 25462637 G A NINL Missense_Mutation p.R593C 0.12 tolerated(0.2) benign(0) TCGA-63-A5MM-01 20 25462684 25462684 G A NINL Missense_Mutation p.A577V 0.12 tolerated(0.19) benign(0.006) TCGA-63-A5MM-01 20 279346 279346 C T ZCCHC3 Silent p.C373C 0.25 TCGA-63-A5MM-01 20 2843434 2843434 G A VPS16 Intron 0.29 TCGA-63-A5MM-01 20 31023798 31023798 T C ASXL1 Missense_Mutation p.S1095P 0.28 tolerated(0.26) benign(0.002) TCGA-63-A5MM-01 20 31395677 31395677 G A DNMT3B Missense_Mutation p.A844T 0.29 deleterious(0) probably_damaging(0.99) TCGA-63-A5MM-01 20 31889123 31889123 A G BPIFB1 Missense_Mutation p.I278V 0.14 tolerated(0.2) benign(0) TCGA-63-A5MM-01 20 33451276 33451276 C T GGT7 Missense_Mutation p.G82E 0.21 tolerated(0.28) benign(0.14) TCGA-63-A5MM-01 20 33530316 33530316 C A GSS Missense_Mutation p.A156S 0.25 tolerated(0.7) benign(0.04) TCGA-63-A5MM-01 20 33585390 33585390 C T MYH7B Missense_Mutation p.R1274C 0.09 possibly_damaging(0.899) TCGA-63-A5MM-01 20 34099456 34099456 C T CEP250 3'UTR 0.09 TCGA-63-A5MM-01 20 368784 368784 C - TRIB3 Frame_Shift_Del p.C46Afs*5 0.10 TCGA-63-A5MM-01 20 37377455 37377455 C T ACTR5 Silent p.L112L 0.20 TCGA-63-A5MM-01 20 37400389 37400389 G A ACTR5 Missense_Mutation p.R585H 0.13 deleterious(0.04) unknown(0) TCGA-63-A5MM-01 20 40074318 40074318 G A CHD6 Silent p.G1288G 0.14 TCGA-63-A5MM-01 20 40141598 40141598 A T CHD6 Missense_Mutation p.Y247N 0.25 deleterious(0) probably_damaging(0.998) TCGA-63-A5MM-01 20 40877393 40877393 C - PTPRT Frame_Shift_Del p.G749Afs*2 0.15 TCGA-63-A5MM-01 20 419917 419917 T C TBC1D20 Missense_Mutation p.E264G 0.19 deleterious(0) probably_damaging(0.995) TCGA-63-A5MM-01 20 4202204 4202204 G A ADRA1D Missense_Mutation p.A562V 0.10 tolerated_low_confidence(0.06) benign(0.004) TCGA-63-A5MM-01 20 43108886 43108886 C T TTPAL Missense_Mutation p.R83C 0.16 deleterious(0) probably_damaging(0.992) TCGA-63-A5MM-01 20 43945409 43945409 T A RBPJL Missense_Mutation p.I455N 0.08 deleterious(0) benign(0.278) TCGA-63-A5MM-01 20 44506944 44506944 C T ZSWIM3 Missense_Mutation p.R583W 0.32 deleterious(0) possibly_damaging(0.61) TCGA-63-A5MM-01 20 44686195 44686195 T G SLC12A5 Missense_Mutation p.V1124G 0.18 deleterious(0) probably_damaging(0.991) TCGA-63-A5MM-01 20 45023067 45023067 C T ELMO2 Missense_Mutation p.A19T 0.12 deleterious(0.04) benign(0.042) TCGA-63-A5MM-01 20 46264985 46264985 A - NCOA3 Frame_Shift_Del p.K620Nfs*18 0.13 TCGA-63-A5MM-01 20 46292211 46292211 G A SULF2 Missense_Mutation p.A738V 0.13 deleterious(0.02) possibly_damaging(0.667) TCGA-63-A5MM-01 20 4680395 4680395 C A PRNP Missense_Mutation p.H177N 0.23 tolerated(0.29) possibly_damaging(0.638) TCGA-63-A5MM-01 20 47592589 47592589 G T ARFGEF2 Missense_Mutation p.G604V 0.13 tolerated(0.34) benign(0) TCGA-63-A5MM-01 20 47612336 47612336 C T ARFGEF2 Silent p.G1046G 0.08 TCGA-63-A5MM-01 20 47864614 47864614 C A ZNFX1 Missense_Mutation p.K1649N 0.12 deleterious(0) possibly_damaging(0.628) TCGA-63-A5MM-01 20 4843520 4843520 C T SLC23A2 Missense_Mutation p.A464T 0.12 deleterious(0.04) possibly_damaging(0.724) TCGA-63-A5MM-01 20 52199427 52199427 T A ZNF217 5'UTR 0.21 TCGA-63-A5MM-01 20 55212936 55212936 C T TFAP2C Missense_Mutation p.A407V 0.15 deleterious(0) probably_damaging(0.989) TCGA-63-A5MM-01 20 55982794 55982794 C T RBM38 Silent p.G204G 0.27 TCGA-63-A5MM-01 20 57480483 57480483 C T GNAS Missense_Mutation p.R803C 0.16 deleterious(0.01) benign(0.287) TCGA-63-A5MM-01 20 58558110 58558110 G T CDH26 Nonsense_Mutation p.E176* 0.12 TCGA-63-A5MM-01 20 5919235 5919235 G A TRMT6 Silent p.H480H 0.30 TCGA-63-A5MM-01 20 6022553 6022553 G A LRRN4 Silent p.F446F 0.24 TCGA-63-A5MM-01 20 60881133 60881133 C T ADRM1 Intron 0.50 TCGA-63-A5MM-01 20 60908987 60908987 C G LAMA5 Missense_Mutation p.E950Q 0.08 benign(0.418) TCGA-63-A5MM-01 20 61511659 61511659 G A DIDO1 Silent p.G1883G 0.22 TCGA-63-A5MM-01 20 61873911 61873911 G A NKAIN4 Silent p.L199L 0.06 TCGA-63-A5MM-01 20 62076098 62076098 A C KCNQ2 Missense_Mutation p.F202V 0.29 deleterious(0.01) possibly_damaging(0.85) TCGA-63-A5MM-01 20 62174830 62174830 C T SRMS Missense_Mutation p.R161Q 0.18 tolerated(0.08) possibly_damaging(0.56) TCGA-63-A5MM-01 20 62319690 62319692 TCT - RTEL1 In_Frame_Del p.F584del 0.22 TCGA-63-A5MM-01 20 62493799 62493799 C T ABHD16B Silent p.N302N 0.19 TCGA-63-A5MM-01 20 9371215 9371215 G T PLCB4 Missense_Mutation p.D426Y 0.20 deleterious(0) probably_damaging(0.957) TCGA-63-A5MM-01 21 18966594 18966595 - T BTG3 Frame_Shift_Ins p.P237Afs*29 0.16 TCGA-63-A5MM-01 21 33076188 33076188 G A SCAF4 Nonsense_Mutation p.R71* 0.10 TCGA-63-A5MM-01 21 34948113 34948113 A T SON Missense_Mutation p.I2379F 0.11 unknown(0) TCGA-63-A5MM-01 21 38498393 38498393 C T TTC3 Missense_Mutation p.A416V 0.17 tolerated(0.4) benign(0.002) TCGA-63-A5MM-01 21 41384984 41384984 C T DSCAM Missense_Mutation p.A2006T 0.21 deleterious_low_confidence(0.04) benign(0.006) TCGA-63-A5MM-01 21 43519058 43519058 C T UMODL1 Silent p.Y318Y 0.06 TCGA-63-A5MM-01 21 43803277 43803277 C T TMPRSS3 Missense_Mutation p.R216H 0.17 deleterious(0) probably_damaging(0.999) TCGA-63-A5MM-01 21 43808610 43808610 C T TMPRSS3 Silent p.V116V 0.11 TCGA-63-A5MM-01 21 44324309 44324309 C T NDUFV3 Missense_Mutation p.A396V 0.21 tolerated(0.11) possibly_damaging(0.77) TCGA-63-A5MM-01 21 45740004 45740004 G A PFKL Missense_Mutation p.A389T 0.20 tolerated(0.45) benign(0.001) TCGA-63-A5MM-01 21 45861629 45861629 C T TRPM2 Missense_Mutation p.R1481C 0.14 tolerated(0.09) benign(0.014) TCGA-63-A5MM-01 21 45994732 45994732 G A KRTAP10-4 Missense_Mutation p.R366H 0.12 tolerated(0.09) unknown(0) TCGA-63-A5MM-01 21 46685268 46685268 C T POFUT2 3'UTR 0.19 TCGA-63-A5MM-01 21 47545188 47545188 C T COL6A2 Silent p.D593D 0.13 TCGA-63-A5MM-01 21 47664973 47664973 G A MCM3AP Missense_Mutation p.R1596C 0.24 deleterious(0.01) possibly_damaging(0.72) TCGA-63-A5MM-01 21 47831328 47831328 G - PCNT Frame_Shift_Del p.G1782Afs*21 0.21 TCGA-63-A5MM-01 21 47924333 47924333 C T DIP2A Missense_Mutation p.R239C 0.12 tolerated(0.06) probably_damaging(0.973) TCGA-63-A5MM-01 22 20127724 20127724 G A ZDHHC8 Missense_Mutation p.R215H 0.14 deleterious(0) probably_damaging(0.998) TCGA-63-A5MM-01 22 20760706 20760706 G A ZNF74 Silent p.V461V 0.24 TCGA-63-A5MM-01 22 20918923 20918923 A T MED15 Missense_Mutation p.Q213L 0.11 tolerated_low_confidence(0.73) unknown(0) TCGA-63-A5MM-01 22 20918924 20918924 G C MED15 Missense_Mutation p.Q213H 0.11 tolerated_low_confidence(0.57) unknown(0) TCGA-63-A5MM-01 22 21157601 21157601 C T PI4KA Missense_Mutation p.G490D 0.17 deleterious(0) probably_damaging(0.994) TCGA-63-A5MM-01 22 21984275 21984275 A G YDJC Missense_Mutation p.V10A 0.18 deleterious(0) possibly_damaging(0.79) TCGA-63-A5MM-01 22 22127166 22127166 T C MAPK1 Missense_Mutation p.D321G 0.09 deleterious(0) probably_damaging(0.957) TCGA-63-A5MM-01 22 22316806 22316806 C T TOP3B Missense_Mutation p.G507D 0.16 deleterious(0) probably_damaging(0.999) TCGA-63-A5MM-01 22 23101675 23101675 G A IGLV2-14 Missense_Mutation p.S110N 0.15 tolerated_low_confidence(0.06) benign(0.272) TCGA-63-A5MM-01 22 23503727 23503727 G A RAB36 Silent p.R326R 0.22 TCGA-63-A5MM-01 22 23956349 23956349 T A C22orf43 Missense_Mutation p.E198D 0.11 tolerated_low_confidence(0.45) possibly_damaging(0.801) TCGA-63-A5MM-01 22 23974150 23974150 C T C22orf43 Missense_Mutation p.A21T 0.16 tolerated_low_confidence(0.08) probably_damaging(0.99) TCGA-63-A5MM-01 22 25243763 25243763 C T SGSM1 Missense_Mutation p.A101V 0.12 tolerated(0.25) benign(0.067) TCGA-63-A5MM-01 22 28194011 28194011 C - MN1 Frame_Shift_Del p.A841Pfs*6 0.09 TCGA-63-A5MM-01 22 29517370 29517370 G T KREMEN1 Missense_Mutation p.K126N 0.12 tolerated(0.21) probably_damaging(0.913) TCGA-63-A5MM-01 22 29534747 29534747 G A KREMEN1 Missense_Mutation p.S367N 0.12 tolerated_low_confidence(0.15) benign(0.02) TCGA-63-A5MM-01 22 29726438 29726438 A T AP1B1 Missense_Mutation p.S899T 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-63-A5MM-01 22 29747192 29747192 G A AP1B1 Missense_Mutation p.R375C 0.16 deleterious(0) probably_damaging(0.999) TCGA-63-A5MM-01 22 31013461 31013461 C T TCN2 Missense_Mutation p.A362V 0.11 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 22 32756540 32756540 C T RFPL3 Silent p.R225R 0.17 TCGA-63-A5MM-01 22 33255323 33255324 - C TIMP3 Frame_Shift_Ins p.D202Gfs*2 0.20 TCGA-63-A5MM-01 22 36541623 36541623 G A APOL3 Missense_Mutation p.A83V 0.20 tolerated(1) benign(0.001) TCGA-63-A5MM-01 22 36960820 36960820 C A CACNG2 Missense_Mutation p.A184S 0.17 deleterious(0) probably_damaging(0.988) TCGA-63-A5MM-01 22 37627425 37627425 G C RAC2 Missense_Mutation p.F98L 0.21 tolerated_low_confidence(0.12) benign(0.004) TCGA-63-A5MM-01 22 38478732 38478732 A G SLC16A8 Missense_Mutation p.F50S 0.21 deleterious(0) probably_damaging(0.928) TCGA-63-A5MM-01 22 40814937 40814937 C T MKL1 Missense_Mutation p.G502D 0.16 tolerated(0.07) benign(0.122) TCGA-63-A5MM-01 22 41257757 41257757 T C DNAJB7 Missense_Mutation p.D81G 0.06 tolerated(0.09) possibly_damaging(0.78) TCGA-63-A5MM-01 22 41863526 41863526 G A PHF5A Missense_Mutation p.R57C 0.08 deleterious(0) probably_damaging(0.971) TCGA-63-A5MM-01 22 43654237 43654237 G A SCUBE1 Missense_Mutation p.R239C 0.20 deleterious(0) possibly_damaging(0.762) TCGA-63-A5MM-01 22 43926824 43926824 C T EFCAB6 Silent p.T1418T 0.11 TCGA-63-A5MM-01 22 44553873 44553873 C T PARVB Silent p.G318G 0.18 TCGA-63-A5MM-01 22 46785282 46785282 G A CELSR1 Missense_Mutation p.R2154C 0.17 deleterious(0) probably_damaging(0.993) TCGA-63-A5MM-01 22 46860114 46860114 C T CELSR1 Missense_Mutation p.A1225T 0.14 tolerated(0.1) benign(0.284) TCGA-63-A5MM-01 22 47086094 47086094 C T CERK Missense_Mutation p.D446N 0.09 tolerated(0.06) possibly_damaging(0.505) TCGA-63-A5MM-01 22 50297585 50297585 C - ALG12 Frame_Shift_Del p.T457Pfs*4 0.14 TCGA-63-A5MM-01 22 50719896 50719896 G A PLXNB2 Silent p.G1185G 0.24 TCGA-63-A5MM-01 2 102632363 102632363 T C IL1R2 Silent p.I121I 0.09 TCGA-63-A5MM-01 2 10282469 10282469 G A C2orf48 Missense_Mutation p.A54T 0.13 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-63-A5MM-01 2 103324608 103324608 C T SLC9A2 Missense_Mutation p.A700V 0.13 tolerated(0.38) benign(0.002) TCGA-63-A5MM-01 2 105883927 105883927 T A TGFBRAP1 Missense_Mutation p.R832S 0.16 tolerated(0.29) possibly_damaging(0.903) TCGA-63-A5MM-01 2 105914990 105914990 G T TGFBRAP1 Silent p.G287G 0.09 TCGA-63-A5MM-01 2 105977699 105977699 C T FHL2 3'UTR 0.08 TCGA-63-A5MM-01 2 106721265 106721265 G A UXS1 Missense_Mutation p.A303V 0.16 deleterious(0) benign(0.3) TCGA-63-A5MM-01 2 110015236 110015236 G T SH3RF3 Missense_Mutation p.R379L 0.14 deleterious(0) probably_damaging(0.996) TCGA-63-A5MM-01 2 110927547 110927547 C T NPHP1 Missense_Mutation p.E120K 0.22 tolerated(0.93) benign(0.187) TCGA-63-A5MM-01 2 113958979 113958979 G A PSD4 Missense_Mutation p.R1053H 0.17 deleterious(0) probably_damaging(0.961) TCGA-63-A5MM-01 2 11702653 11702653 C - GREB1 Frame_Shift_Del p.P76Qfs*100 0.16 TCGA-63-A5MM-01 2 128186478 128186478 C T PROC Missense_Mutation p.H448Y 0.11 tolerated(0.18) benign(0.007) TCGA-63-A5MM-01 2 128409270 128409270 C - GPR17 Frame_Shift_Del p.S351Afs*11 0.12 TCGA-63-A5MM-01 2 128700043 128700043 T - SAP130 Frame_Shift_Del p.A1017Qfs*10 0.09 TCGA-63-A5MM-01 2 128712580 128712580 T C SAP130 Missense_Mutation p.D827G 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.908) TCGA-63-A5MM-01 2 129026332 129026332 G A HS6ST1 Missense_Mutation p.R214C 0.14 deleterious(0) probably_damaging(0.999) TCGA-63-A5MM-01 2 130951686 130951686 T A TUBA3E Silent p.R243R 0.16 TCGA-63-A5MM-01 2 131890541 131890541 G A PLEKHB2 Missense_Mutation p.A134T 0.08 tolerated(0.33) benign(0.434) TCGA-63-A5MM-01 2 133540574 133540574 G A NCKAP5 Silent p.G1270G 0.13 TCGA-63-A5MM-01 2 133547754 133547754 C G NCKAP5 Missense_Mutation p.A312P 0.17 deleterious(0.02) probably_damaging(0.964) TCGA-63-A5MM-01 2 136566233 136566233 G A LCT Silent p.D1228D 0.20 TCGA-63-A5MM-01 2 153006666 153006666 G C STAM2 Missense_Mutation p.P40A 0.19 tolerated(0.1) benign(0.149) TCGA-63-A5MM-01 2 158290928 158290928 A G CYTIP Missense_Mutation p.V78A 0.09 deleterious(0) benign(0.12) TCGA-63-A5MM-01 2 160035241 160035241 A G TANC1 Missense_Mutation p.S693G 0.20 deleterious(0.02) probably_damaging(0.995) TCGA-63-A5MM-01 2 160053216 160053216 C T TANC1 Missense_Mutation p.S1026L 0.17 tolerated(0.12) benign(0.013) TCGA-63-A5MM-01 2 162751274 162751274 T A SLC4A10 Missense_Mutation p.L427H 0.17 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 2 163031403 163031403 G A FAP Missense_Mutation p.A648V 0.21 deleterious(0) probably_damaging(0.934) TCGA-63-A5MM-01 2 167056266 167056266 T C SCN9A Missense_Mutation p.K1617R 0.09 tolerated(0.06) probably_damaging(0.995) TCGA-63-A5MM-01 2 168102125 168102125 C A XIRP2 Missense_Mutation p.P1408H 0.12 benign(0.063) TCGA-63-A5MM-01 2 168104783 168104783 C T XIRP2 Missense_Mutation p.P2294L 0.29 probably_damaging(1) TCGA-63-A5MM-01 2 172671649 172671649 G C SLC25A12 Missense_Mutation p.L332V 0.12 deleterious(0.01) possibly_damaging(0.901) TCGA-63-A5MM-01 2 174945897 174945897 G A OLA1 Missense_Mutation p.R317C 0.09 deleterious(0) probably_damaging(0.986) TCGA-63-A5MM-01 2 175216367 175216367 T C CIR1 Missense_Mutation p.T191A 0.09 tolerated(0.08) unknown(0) TCGA-63-A5MM-01 2 176794835 176794835 C T KIAA1715 Missense_Mutation p.A383T 0.16 tolerated(0.13) benign(0.002) TCGA-63-A5MM-01 2 177016421 177016421 C T HOXD4 Silent p.C20C 0.12 TCGA-63-A5MM-01 2 179577280 179577280 T C TTN Missense_Mutation p.I9123M 0.15 TCGA-63-A5MM-01 2 179598137 179598137 A G TTN Missense_Mutation p.Y5295H 0.16 TCGA-63-A5MM-01 2 191847187 191847187 G A STAT1 Silent p.L502L 0.08 TCGA-63-A5MM-01 2 197791402 197791402 C A PGAP1 5'UTR 0.14 TCGA-63-A5MM-01 2 20145697 20145697 T C WDR35 Silent p.V576V 0.16 TCGA-63-A5MM-01 2 202093865 202093865 G A CASP10 3'UTR 0.23 TCGA-63-A5MM-01 2 203383723 203383723 T C BMPR2 Missense_Mutation p.V267A 0.16 tolerated(0.58) benign(0.011) TCGA-63-A5MM-01 2 204064113 204064113 A G NBEAL1 Missense_Mutation p.D2365G 0.19 deleterious(0) possibly_damaging(0.624) TCGA-63-A5MM-01 2 206590700 206590700 C T NRP2 Missense_Mutation p.A295V 0.09 tolerated(0.06) probably_damaging(0.956) TCGA-63-A5MM-01 2 206592651 206592651 G A NRP2 Missense_Mutation p.A343T 0.10 deleterious(0.01) probably_damaging(1) TCGA-63-A5MM-01 2 209138336 209138336 G A PIKFYVE Silent p.Q67Q 0.18 TCGA-63-A5MM-01 2 210893652 210893652 G A KANSL1L Silent p.D771D 0.10 TCGA-63-A5MM-01 2 21247831 21247831 G A APOB Missense_Mutation p.R804C 0.14 possibly_damaging(0.877) TCGA-63-A5MM-01 2 215609830 215609830 G A BARD1 Missense_Mutation p.L622F 0.08 deleterious(0) probably_damaging(0.99) TCGA-63-A5MM-01 2 218712883 218712883 C T TNS1 Missense_Mutation p.R661H 0.27 tolerated(0.62) benign(0.001) TCGA-63-A5MM-01 2 219509084 219509084 C T ZNF142 Missense_Mutation p.A719T 0.18 tolerated(0.28) possibly_damaging(0.483) TCGA-63-A5MM-01 2 219513948 219513948 G A ZNF142 Missense_Mutation p.A228V 0.14 deleterious(0.01) possibly_damaging(0.499) TCGA-63-A5MM-01 2 219878594 219878594 A G CCDC108 Missense_Mutation p.Y1259H 0.12 tolerated(0.54) possibly_damaging(0.789) TCGA-63-A5MM-01 2 220098097 220098097 G T ANKZF1 Missense_Mutation p.G254V 0.10 tolerated(0.59) benign(0.14) TCGA-63-A5MM-01 2 220353552 220353552 G A SPEG Silent p.T2693T 0.27 TCGA-63-A5MM-01 2 220430211 220430211 G T OBSL1 Silent p.P720P 0.15 TCGA-63-A5MM-01 2 220493221 220493221 A G SLC4A3 Missense_Mutation p.D49G 0.16 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-63-A5MM-01 2 224463881 224463881 T C SCG2 Silent p.P40P 0.07 TCGA-63-A5MM-01 2 227660269 227660270 - C IRS1 Frame_Shift_Ins p.Q1064Tfs*17 0.18 TCGA-63-A5MM-01 2 227872144 227872144 G A COL4A4 Missense_Mutation p.A1657V 0.17 unknown(0) TCGA-63-A5MM-01 2 228860302 228860302 G A SPHKAP Silent p.S1519S 0.10 TCGA-63-A5MM-01 2 229890590 229890590 C T PID1 Missense_Mutation p.A169T 0.17 deleterious(0) probably_damaging(0.998) TCGA-63-A5MM-01 2 231774695 231774695 C - GPR55 3'UTR 0.11 TCGA-63-A5MM-01 2 233710552 233710552 G A GIGYF2 Missense_Mutation p.C1160Y 0.15 unknown(0) TCGA-63-A5MM-01 2 234184451 234184451 T - ATG16L1 Intron 0.14 TCGA-63-A5MM-01 2 238274558 238274558 C A COL6A3 Missense_Mutation p.R1874M 0.20 possibly_damaging(0.894) TCGA-63-A5MM-01 2 238289918 238289918 G A COL6A3 Missense_Mutation p.R513W 0.18 probably_damaging(0.999) TCGA-63-A5MM-01 2 238296274 238296274 G A COL6A3 Silent p.G421G 0.12 TCGA-63-A5MM-01 2 242357516 242357516 G A FARP2 Missense_Mutation p.V255M 0.18 deleterious(0) probably_damaging(0.999) TCGA-63-A5MM-01 2 24261493 24261493 T C C2orf44 Missense_Mutation p.N291S 0.18 tolerated(0.45) benign(0.023) TCGA-63-A5MM-01 2 24302485 24302485 G T TP53I3 Missense_Mutation p.D215E 0.18 deleterious(0) probably_damaging(0.995) TCGA-63-A5MM-01 2 26653673 26653673 G A DRC1 Missense_Mutation p.R233H 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-63-A5MM-01 2 26724639 26724639 G A OTOF Missense_Mutation p.R250W 0.10 deleterious(0) probably_damaging(0.987) TCGA-63-A5MM-01 2 27315301 27315301 C A KHK Missense_Mutation p.P65H 0.17 deleterious(0.03) benign(0.017) TCGA-63-A5MM-01 2 27361167 27361167 G A C2orf53 Missense_Mutation p.P11S 0.12 deleterious(0.02) benign(0.085) TCGA-63-A5MM-01 2 27454980 27454980 G A CAD Missense_Mutation p.A845T 0.16 tolerated(0.2) benign(0.001) TCGA-63-A5MM-01 2 27601437 27601437 G - ZNF513 Frame_Shift_Del p.T233Lfs*42 0.13 TCGA-63-A5MM-01 2 29293603 29293603 C T C2orf71 Silent p.S1175S 0.06 TCGA-63-A5MM-01 2 29436893 29436893 C T ALK Missense_Mutation p.A1234T 0.15 deleterious(0) probably_damaging(0.999) TCGA-63-A5MM-01 2 30966445 30966445 G A CAPN13 Missense_Mutation p.R417W 0.18 deleterious(0.02) benign(0.01) TCGA-63-A5MM-01 2 3358345 3358345 C T TSSC1 Silent p.T34T 0.10 TCGA-63-A5MM-01 2 3391955 3391955 C T TRAPPC12 Silent p.G187G 0.18 TCGA-63-A5MM-01 2 37376306 37376306 A T EIF2AK2 Intron 0.11 TCGA-63-A5MM-01 2 37516632 37516632 C T PRKD3 Missense_Mutation p.R195Q 0.15 deleterious(0.01) possibly_damaging(0.88) TCGA-63-A5MM-01 2 40656799 40656799 C A SLC8A1 Missense_Mutation p.A208S 0.16 deleterious(0.05) probably_damaging(0.951) TCGA-63-A5MM-01 2 42720479 42720479 C T KCNG3 Missense_Mutation p.D55N 0.38 tolerated(0.1) probably_damaging(1) TCGA-63-A5MM-01 2 42989964 42989964 G C OXER1 3'UTR 0.21 TCGA-63-A5MM-01 2 44079891 44079891 T C ABCG8 Missense_Mutation p.V283A 0.23 deleterious(0) possibly_damaging(0.818) TCGA-63-A5MM-01 2 54857094 54857094 C T SPTBN1 Missense_Mutation p.A912V 0.13 tolerated(0.31) probably_damaging(0.976) TCGA-63-A5MM-01 2 54873365 54873365 G A SPTBN1 Missense_Mutation p.R1540H 0.18 deleterious(0.01) benign(0.087) TCGA-63-A5MM-01 2 60679591 60679591 G A BCL11A 3'Flank 0.15 TCGA-63-A5MM-01 2 60773173 60773173 C T BCL11A Silent p.T106T 0.10 TCGA-63-A5MM-01 2 61725813 61725813 A T XPO1 Missense_Mutation p.Y252N 0.11 tolerated(0.6) benign(0.012) TCGA-63-A5MM-01 2 63283304 63283304 C A OTX1 Silent p.G306G 0.16 TCGA-63-A5MM-01 2 70454882 70454882 G A TIA1 Missense_Mutation p.P128L 0.17 deleterious(0) possibly_damaging(0.473) TCGA-63-A5MM-01 2 71740971 71740971 C T DYSF Missense_Mutation p.P227S 0.21 tolerated(0.37) benign(0.015) TCGA-63-A5MM-01 2 72359625 72359625 C A CYP26B1 Missense_Mutation p.D424Y 0.20 deleterious(0.01) possibly_damaging(0.796) TCGA-63-A5MM-01 2 73518738 73518738 C T EGR4 Silent p.K539K 0.10 TCGA-63-A5MM-01 2 73868790 73868790 G T NAT8 5'UTR 0.20 TCGA-63-A5MM-01 2 74327658 74327658 C G TET3 Missense_Mutation p.P1113R 0.21 deleterious(0) probably_damaging(0.99) TCGA-63-A5MM-01 2 80096965 80096966 - A CTNNA2 Frame_Shift_Ins p.N165Kfs*5 0.15 TCGA-63-A5MM-01 2 85850798 85850799 CA - USP39 Frame_Shift_Del p.H155Qfs*5 0.12 TCGA-63-A5MM-01 2 86272856 86272856 G A POLR1A Missense_Mutation p.R924W 0.07 deleterious(0) possibly_damaging(0.479) TCGA-63-A5MM-01 2 86363129 86363129 G A PTCD3 Intron 0.16 TCGA-63-A5MM-01 2 86697388 86697388 C T KDM3A Silent p.G527G 0.19 TCGA-63-A5MM-01 2 9437451 9437451 G A ASAP2 Silent p.Q74Q 0.18 TCGA-63-A5MM-01 2 96852392 96852392 T C STARD7 3'UTR 0.25 TCGA-63-A5MM-01 2 97278595 97278595 C T KANSL3 Missense_Mutation p.R291H 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-63-A5MM-01 2 97506239 97506239 C T ANKRD23 Missense_Mutation p.A147T 0.14 deleterious(0.02) possibly_damaging(0.751) TCGA-63-A5MM-01 2 98804443 98804443 G A VWA3B Silent p.T439T 0.19 TCGA-63-A5MM-01 3 100413766 100413766 G A GPR128 Missense_Mutation p.R772H 0.15 tolerated(0.33) benign(0.005) TCGA-63-A5MM-01 3 100511604 100511604 C G ABI3BP Missense_Mutation p.D633H 0.21 tolerated(0.2) probably_damaging(0.99) TCGA-63-A5MM-01 3 105421298 105421298 A T CBLB Silent p.S533S 0.16 TCGA-63-A5MM-01 3 108129667 108129667 C T MYH15 Missense_Mutation p.A1440T 0.14 tolerated(0.08) benign(0.011) TCGA-63-A5MM-01 3 111923223 111923223 A - SLC9C1 Frame_Shift_Del p.S672Hfs*9 0.10 TCGA-63-A5MM-01 3 113379777 113379777 G C KIAA2018 Missense_Mutation p.A251G 0.07 benign(0.075) TCGA-63-A5MM-01 3 113517124 113517124 G A ATP6V1A Missense_Mutation p.R442H 0.17 deleterious(0) probably_damaging(0.98) TCGA-63-A5MM-01 3 11399920 11399920 C A ATG7 Missense_Mutation p.P438H 0.17 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 3 11600286 11600286 T A VGLL4 Missense_Mutation p.D212V 0.20 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 3 122496651 122496651 C T HSPBAP1 Missense_Mutation p.R56Q 0.17 tolerated(0.38) benign(0.025) TCGA-63-A5MM-01 3 123339215 123339215 C T MYLK Intron 0.11 TCGA-63-A5MM-01 3 123366262 123366262 T C MYLK Silent p.G1476G 0.26 TCGA-63-A5MM-01 3 124456887 124456887 A G UMPS Silent p.S261S 0.12 TCGA-63-A5MM-01 3 126201016 126201016 C T UROC1 3'UTR 0.19 TCGA-63-A5MM-01 3 128200073 128200073 G A GATA2 Missense_Mutation p.A411V 0.11 tolerated(0.14) benign(0.008) TCGA-63-A5MM-01 3 128979543 128979543 G A COPG1 Missense_Mutation p.A341T 0.15 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 3 131442311 131442311 G T CPNE4 Silent p.G113G 0.16 TCGA-63-A5MM-01 3 134670504 134670504 A T EPHB1 Missense_Mutation p.T139S 0.08 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 3 136701099 136701099 G A IL20RB Missense_Mutation p.A105T 0.12 deleterious(0.02) probably_damaging(0.975) TCGA-63-A5MM-01 3 138255939 138255939 C T CEP70 Intron 0.12 TCGA-63-A5MM-01 3 140281769 140281769 C T CLSTN2 Missense_Mutation p.R777C 0.15 deleterious(0) probably_damaging(0.991) TCGA-63-A5MM-01 3 141497472 141497472 G A GRK7 Missense_Mutation p.A116T 0.14 tolerated(0.55) benign(0.018) TCGA-63-A5MM-01 3 14180727 14180727 C T TMEM43 Silent p.G310G 0.15 TCGA-63-A5MM-01 3 142423326 142423326 G T PLS1 Silent p.S509S 0.17 TCGA-63-A5MM-01 3 147130365 147130365 A G ZIC1 Missense_Mutation p.D348G 0.12 deleterious(0.01) probably_damaging(0.991) TCGA-63-A5MM-01 3 149629872 149629872 T C RNF13 Splice_Site p.X202_splice 0.27 TCGA-63-A5MM-01 3 15126301 15126301 C T ZFYVE20 Missense_Mutation p.R180H 0.18 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 3 15276620 15276620 G A CAPN7 Missense_Mutation p.A459T 0.17 deleterious(0) probably_damaging(0.995) TCGA-63-A5MM-01 3 160150820 160150820 A C SMC4 Silent p.R1179R 0.20 TCGA-63-A5MM-01 3 165548164 165548164 C A BCHE Missense_Mutation p.V220L 0.15 deleterious(0) benign(0.323) TCGA-63-A5MM-01 3 178952197 178952197 C T PIK3CA 3'UTR 0.13 TCGA-63-A5MM-01 3 183210296 183210296 C T KLHL6 Missense_Mutation p.R517H 0.17 tolerated(0.57) benign(0) TCGA-63-A5MM-01 3 183896700 183896700 C T AP2M1 Missense_Mutation p.R44C 0.13 deleterious(0) probably_damaging(0.987) TCGA-63-A5MM-01 3 184071989 184071989 C T CLCN2 Missense_Mutation p.A541T 0.10 deleterious(0) probably_damaging(0.979) TCGA-63-A5MM-01 3 184093722 184093722 A T THPO Missense_Mutation p.V32D 0.21 deleterious(0) possibly_damaging(0.611) TCGA-63-A5MM-01 3 184801114 184801114 T C C3orf70 Missense_Mutation p.Y145C 0.12 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-63-A5MM-01 3 186272285 186272285 G A TBCCD1 Silent p.G434G 0.16 TCGA-63-A5MM-01 3 187386811 187386811 G A SST 3'UTR 0.17 TCGA-63-A5MM-01 3 193355842 193355842 T C OPA1 Silent p.R361R 0.10 TCGA-63-A5MM-01 3 196234860 196234860 A G SMCO1 Silent p.S181S 0.12 TCGA-63-A5MM-01 3 32148229 32148229 G A GPD1L Missense_Mutation p.C9Y 0.19 deleterious(0) possibly_damaging(0.692) TCGA-63-A5MM-01 3 33060002 33060002 G A GLB1 Missense_Mutation p.P429S 0.14 tolerated(0.13) benign(0.002) TCGA-63-A5MM-01 3 33450184 33450184 T C UBP1 Missense_Mutation p.S309G 0.21 tolerated(0.14) benign(0.05) TCGA-63-A5MM-01 3 37090498 37090498 C G MLH1 Nonsense_Mutation p.S698* 0.08 TCGA-63-A5MM-01 3 38289202 38289202 T C OXSR1 Missense_Mutation p.I434T 0.29 tolerated(0.09) benign(0.41) TCGA-63-A5MM-01 3 38355272 38355272 C T SLC22A14 Silent p.G406G 0.07 TCGA-63-A5MM-01 3 39126221 39126221 C T WDR48 Missense_Mutation p.S456L 0.26 tolerated(0.26) benign(0.098) TCGA-63-A5MM-01 3 40293470 40293470 G T MYRIP Missense_Mutation p.G843C 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.449) TCGA-63-A5MM-01 3 48040154 48040154 G A MAP4 Missense_Mutation p.P66L 0.19 deleterious(0.03) benign(0.041) TCGA-63-A5MM-01 3 49570140 49570140 G A DAG1 Silent p.P732P 0.18 TCGA-63-A5MM-01 3 51429958 51429958 C T RBM15B Silent p.G376G 0.21 TCGA-63-A5MM-01 3 51980305 51980305 C T PARP3 Missense_Mutation p.R415C 0.30 deleterious(0.05) benign(0.372) TCGA-63-A5MM-01 3 52380716 52380716 A G DNAH1 Missense_Mutation p.T629A 0.11 benign(0) TCGA-63-A5MM-01 3 52387474 52387474 G A DNAH1 Missense_Mutation p.R1102H 0.16 possibly_damaging(0.874) TCGA-63-A5MM-01 3 52727228 52727228 G A GNL3 Missense_Mutation p.G357D 0.20 tolerated(1) benign(0.001) TCGA-63-A5MM-01 3 52780899 52780899 T A NEK4 Missense_Mutation p.I510F 0.25 tolerated(0.42) benign(0.002) TCGA-63-A5MM-01 3 55922429 55922429 A T ERC2 Missense_Mutation p.I851N 0.19 deleterious(0) possibly_damaging(0.53) TCGA-63-A5MM-01 3 56675648 56675648 C T FAM208A Missense_Mutation p.R783H 0.19 tolerated(0.12) possibly_damaging(0.862) TCGA-63-A5MM-01 3 57303757 57303757 T G APPL1 3'UTR 0.21 TCGA-63-A5MM-01 3 58510265 58510266 GA - ACOX2 Frame_Shift_Del p.P472Ifs*9 0.14 TCGA-63-A5MM-01 3 65342793 65342793 G A MAGI1 Missense_Mutation p.R1217C 0.23 tolerated(0.05) possibly_damaging(0.764) TCGA-63-A5MM-01 3 96706214 96706214 T C EPHA6 Missense_Mutation p.I164T 0.16 deleterious(0) probably_damaging(0.998) TCGA-63-A5MM-01 3 9780886 9780886 C T BRPF1 Missense_Mutation p.A268V 0.21 deleterious(0.01) benign(0.131) TCGA-63-A5MM-01 3 9786158 9786158 C T BRPF1 Silent p.S962S 0.10 TCGA-63-A5MM-01 3 9798460 9798460 T C OGG1 Missense_Mutation p.F303S 0.20 deleterious(0) probably_damaging(0.996) TCGA-63-A5MM-01 3 98002424 98002424 A - OR5H2 Frame_Shift_Del p.K233Rfs*7 0.15 TCGA-63-A5MM-01 3 9868759 9868759 G T TTLL3 Missense_Mutation p.W461L 0.06 deleterious(0.03) possibly_damaging(0.644) TCGA-63-A5MM-01 3 99979900 99979900 C T TBC1D23 Missense_Mutation p.S13L 0.21 tolerated_low_confidence(0.98) benign(0) TCGA-63-A5MM-01 4 103853442 103853442 G T SLC9B1 Missense_Mutation p.A223D 0.21 deleterious(0) probably_damaging(0.99) TCGA-63-A5MM-01 4 103987582 103987582 T - SLC9B2 Frame_Shift_Del p.K58Sfs*15 0.16 TCGA-63-A5MM-01 4 111397515 111397515 T C ENPEP 5'UTR 0.13 TCGA-63-A5MM-01 4 111539591 111539591 T C PITX2 Missense_Mutation p.N222S 0.05 tolerated(1) benign(0.187) TCGA-63-A5MM-01 4 11400978 11400978 C T HS3ST1 Missense_Mutation p.D218N 0.12 tolerated(0.06) possibly_damaging(0.713) TCGA-63-A5MM-01 4 115544436 115544436 C A UGT8 Missense_Mutation p.L134M 0.16 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 4 119158329 119158329 T A NDST3 Missense_Mutation p.I691N 0.15 deleterious(0) probably_damaging(0.961) TCGA-63-A5MM-01 4 123663140 123663140 C T BBS12 Silent p.G31G 0.22 TCGA-63-A5MM-01 4 13603422 13603422 G C BOD1L1 Missense_Mutation p.S1701C 0.05 probably_damaging(0.999) TCGA-63-A5MM-01 4 141488945 141488945 C T UCP1 Missense_Mutation p.A105T 0.11 tolerated(0.57) benign(0.002) TCGA-63-A5MM-01 4 141600927 141600927 G A TBC1D9 Missense_Mutation p.A144V 0.16 tolerated(0.06) benign(0.035) TCGA-63-A5MM-01 4 145628250 145628250 A G HHIP Missense_Mutation p.H332R 0.09 deleterious(0.02) benign(0.001) TCGA-63-A5MM-01 4 147561576 147561576 G A POU4F2 Silent p.A282A 0.16 TCGA-63-A5MM-01 4 148575607 148575607 C T PRMT10 Missense_Mutation p.A481T 0.14 tolerated(0.58) benign(0) TCGA-63-A5MM-01 4 149357579 149357579 T C NR3C2 Missense_Mutation p.K145R 0.14 deleterious_low_confidence(0.05) possibly_damaging(0.636) TCGA-63-A5MM-01 4 154624896 154624896 G A TLR2 Silent p.L279L 0.12 TCGA-63-A5MM-01 4 156135160 156135160 G T NPY2R Silent p.G23G 0.15 TCGA-63-A5MM-01 4 159076842 159076842 A G FAM198B Missense_Mutation p.V357A 0.10 tolerated(0.42) benign(0.017) TCGA-63-A5MM-01 4 168155232 168155232 C - SPOCK3 Frame_Shift_Del p.R32Gfs*34 0.21 TCGA-63-A5MM-01 4 169279382 169279382 G T DDX60L Silent p.V1679V 0.20 TCGA-63-A5MM-01 4 177036998 177036998 A - WDR17 Frame_Shift_Del p.T85Qfs*23 0.20 TCGA-63-A5MM-01 4 183267873 183267873 C T TENM3 Missense_Mutation p.A101V 0.19 tolerated_low_confidence(0.16) possibly_damaging(0.798) TCGA-63-A5MM-01 4 184932533 184932533 G A STOX2 Missense_Mutation p.D848N 0.18 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-63-A5MM-01 4 185622020 185622020 C T CENPU Missense_Mutation p.E314K 0.26 tolerated(0.32) possibly_damaging(0.483) TCGA-63-A5MM-01 4 187628340 187628340 C T FAT1 Missense_Mutation p.R881H 0.14 benign(0.005) TCGA-63-A5MM-01 4 187629492 187629492 T A FAT1 Missense_Mutation p.Y497F 0.20 benign(0.232) TCGA-63-A5MM-01 4 22422461 22422461 T C GPR125 Intron 0.11 TCGA-63-A5MM-01 4 2831391 2831391 A G SH3BP2 Missense_Mutation p.D310G 0.13 tolerated_low_confidence(0.08) probably_damaging(0.998) TCGA-63-A5MM-01 4 2877744 2877744 G T ADD1 Missense_Mutation p.E34D 0.17 tolerated(0.07) benign(0.071) TCGA-63-A5MM-01 4 3427220 3427220 C T RGS12 Silent p.G1088G 0.17 TCGA-63-A5MM-01 4 37636525 37636525 C T RELL1 Missense_Mutation p.V222I 0.12 tolerated(0.08) benign(0.415) TCGA-63-A5MM-01 4 39448711 39448711 T C KLB Missense_Mutation p.Y789H 0.18 tolerated(0.09) benign(0.248) TCGA-63-A5MM-01 4 41992754 41992754 C T SLC30A9 Missense_Mutation p.A29V 0.20 tolerated_low_confidence(0.59) benign(0) TCGA-63-A5MM-01 4 435852 435852 T A ZNF721 Missense_Mutation p.I802F 0.25 deleterious(0.01) probably_damaging(0.936) TCGA-63-A5MM-01 4 44724234 44724234 G A GNPDA2 5'UTR 0.10 TCGA-63-A5MM-01 4 4864487 4864487 A G MSX1 Missense_Mutation p.T177A 0.15 deleterious(0) probably_damaging(0.999) TCGA-63-A5MM-01 4 48834663 48834663 C T OCIAD1 Nonsense_Mutation p.R8* 0.16 TCGA-63-A5MM-01 4 517344 517344 G A PIGG Missense_Mutation p.V571M 0.10 deleterious(0) possibly_damaging(0.726) TCGA-63-A5MM-01 4 5617247 5617247 G T EVC2 Silent p.R911R 0.12 TCGA-63-A5MM-01 4 57182089 57182089 G A KIAA1211 Silent p.P807P 0.12 TCGA-63-A5MM-01 4 57209794 57209794 A G AASDH Silent p.C903C 0.23 TCGA-63-A5MM-01 4 57269307 57269307 A G PPAT Missense_Mutation p.L187P 0.15 deleterious(0.01) possibly_damaging(0.824) TCGA-63-A5MM-01 4 6296776 6296776 T A WFS1 Missense_Mutation p.Y241N 0.08 tolerated(0.09) benign(0.206) TCGA-63-A5MM-01 4 6303265 6303265 C T WFS1 Silent p.G581G 0.13 TCGA-63-A5MM-01 4 680416 680416 G A MFSD7 Nonsense_Mutation p.Q67* 0.14 TCGA-63-A5MM-01 4 73414302 73414302 T C ADAMTS3 Missense_Mutation p.T133A 0.05 tolerated(0.34) benign(0.002) TCGA-63-A5MM-01 4 74005546 74005546 T C ANKRD17 Silent p.L929L 0.20 TCGA-63-A5MM-01 4 77675851 77675851 C T SHROOM3 Silent p.G1405G 0.23 TCGA-63-A5MM-01 4 78697502 78697502 C T CNOT6L Missense_Mutation p.R17H 0.07 deleterious(0) probably_damaging(0.974) TCGA-63-A5MM-01 4 79421016 79421016 G A FRAS1 Missense_Mutation p.G3086D 0.14 probably_damaging(1) TCGA-63-A5MM-01 4 8398749 8398749 G A ACOX3 Missense_Mutation p.A324V 0.18 tolerated(0.3) benign(0.012) TCGA-63-A5MM-01 4 85674886 85674886 G A WDFY3 Silent p.T1901T 0.17 TCGA-63-A5MM-01 4 8621264 8621264 G A CPZ Missense_Mutation p.A627T 0.15 tolerated_low_confidence(0.17) benign(0.003) TCGA-63-A5MM-01 4 87729025 87729025 G T PTPN13 Missense_Mutation p.R2358M 0.12 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 4 88414853 88414853 C T SPARCL1 Missense_Mutation p.A367T 0.08 tolerated(0.35) benign(0.004) TCGA-63-A5MM-01 4 89601366 89601366 T A HERC3 Missense_Mutation p.N773K 0.20 deleterious(0.03) possibly_damaging(0.559) TCGA-63-A5MM-01 4 89618998 89618998 C T NAP1L5 5'UTR 0.17 TCGA-63-A5MM-01 4 90169471 90169471 T G GPRIN3 Missense_Mutation p.R597S 0.17 deleterious(0.01) possibly_damaging(0.81) TCGA-63-A5MM-01 5 10239228 10239228 C T FAM173B Missense_Mutation p.R86Q 0.10 tolerated(0.62) benign(0.003) TCGA-63-A5MM-01 5 10254842 10254842 G A CCT5 Missense_Mutation p.A75T 0.14 deleterious(0) probably_damaging(0.948) TCGA-63-A5MM-01 5 110814115 110814115 C T CAMK4 Silent p.G246G 0.08 TCGA-63-A5MM-01 5 112179453 112179453 G A APC Missense_Mutation p.R2721H 0.21 benign(0.007) TCGA-63-A5MM-01 5 11364968 11364968 C A CTNND2 Silent p.G404G 0.23 TCGA-63-A5MM-01 5 114860792 114860792 C T FEM1C Missense_Mutation p.R356Q 0.17 tolerated(0.14) probably_damaging(0.947) TCGA-63-A5MM-01 5 118552666 118552666 C T DMXL1 Missense_Mutation p.A2645V 0.08 deleterious(0) probably_damaging(0.999) TCGA-63-A5MM-01 5 122364533 122364533 G A PPIC Missense_Mutation p.H88Y 0.11 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 5 125891630 125891630 T C ALDH7A1 Silent p.P362P 0.16 TCGA-63-A5MM-01 5 126161712 126161712 C - LMNB1 Frame_Shift_Del p.P510Qfs*18 0.19 TCGA-63-A5MM-01 5 131007941 131007941 T - FNIP1 Frame_Shift_Del p.K732Nfs*23 0.18 TCGA-63-A5MM-01 5 132036345 132036345 C T KIF3A Nonsense_Mutation p.W617* 0.25 TCGA-63-A5MM-01 5 133533465 133533465 A G PPP2CA Nonstop_Mutation p.*310Qext*1 0.09 TCGA-63-A5MM-01 5 134126167 134126167 C T DDX46 Silent p.V517V 0.19 TCGA-63-A5MM-01 5 134223686 134223686 C T TXNDC15 Silent p.G135G 0.17 TCGA-63-A5MM-01 5 134364508 134364508 G A PITX1 Silent p.G302G 0.17 TCGA-63-A5MM-01 5 135390437 135390437 A T TGFBI Missense_Mutation p.N433Y 0.14 deleterious(0.04) possibly_damaging(0.748) TCGA-63-A5MM-01 5 135692515 135692515 G A TRPC7 Silent p.G187G 0.10 TCGA-63-A5MM-01 5 137496620 137496620 A G BRD8 Missense_Mutation p.M796T 0.16 deleterious(0) probably_damaging(0.932) TCGA-63-A5MM-01 5 137593596 137593596 C T GFRA3 Missense_Mutation p.D173N 0.21 tolerated(0.16) possibly_damaging(0.806) TCGA-63-A5MM-01 5 137622867 137622867 T G CDC25C Silent p.G339G 0.29 TCGA-63-A5MM-01 5 138268313 138268313 G A CTNNA1 Missense_Mutation p.R782H 0.18 deleterious(0) probably_damaging(0.99) TCGA-63-A5MM-01 5 138268584 138268584 A G CTNNA1 Intron 0.12 TCGA-63-A5MM-01 5 138287501 138287501 C T SIL1 Silent p.E280E 0.23 TCGA-63-A5MM-01 5 139216515 139216515 C T PSD2 Missense_Mutation p.A508V 0.16 tolerated(0.18) benign(0.217) TCGA-63-A5MM-01 5 139825337 139825337 G A ANKHD1 Silent p.A308A 0.12 TCGA-63-A5MM-01 5 140203288 140203288 G A PCDHA5 Missense_Mutation p.R643H 0.13 deleterious_low_confidence(0.03) benign(0.149) TCGA-63-A5MM-01 5 140209552 140209552 C T PCDHA6 Silent p.L626L 0.16 TCGA-63-A5MM-01 5 140222014 140222014 G A PCDHA8 Missense_Mutation p.A370T 0.15 tolerated_low_confidence(0.08) benign(0.339) TCGA-63-A5MM-01 5 140230175 140230175 T C PCDHA9 Missense_Mutation p.Y699H 0.06 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-63-A5MM-01 5 140250073 140250073 T C PCDHA11 Missense_Mutation p.F462S 0.19 deleterious_low_confidence(0.03) possibly_damaging(0.832) TCGA-63-A5MM-01 5 140250986 140250986 G A PCDHA11 Silent p.T766T 0.26 TCGA-63-A5MM-01 5 140262243 140262243 G A PCDHA13 Silent p.P130P 0.14 TCGA-63-A5MM-01 5 140431443 140431443 G A PCDHB1 Missense_Mutation p.A130T 0.20 tolerated(0.07) probably_damaging(0.994) TCGA-63-A5MM-01 5 140432210 140432210 C T PCDHB1 Silent p.F385F 0.25 TCGA-63-A5MM-01 5 140475998 140475998 G A PCDHB2 Missense_Mutation p.A542T 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.728) TCGA-63-A5MM-01 5 140517110 140517110 G A PCDHB5 Silent p.S698S 0.05 TCGA-63-A5MM-01 5 140615999 140615999 C T PCDHB18 RNA 0.10 TCGA-63-A5MM-01 5 140627112 140627112 G A PCDHB15 Missense_Mutation p.A656T 0.14 deleterious_low_confidence(0.01) benign(0.225) TCGA-63-A5MM-01 5 140750704 140750704 G T PCDHGB3 Missense_Mutation p.R248M 0.12 deleterious(0.04) probably_damaging(0.937) TCGA-63-A5MM-01 5 140782907 140782907 G A PCDHGA9 Missense_Mutation p.A130T 0.14 tolerated_low_confidence(0.22) benign(0.064) TCGA-63-A5MM-01 5 140811313 140811313 G A PCDHGA12 Silent p.A329A 0.12 TCGA-63-A5MM-01 5 141052405 141052405 C T ARAP3 Missense_Mutation p.R394Q 0.18 tolerated(0.31) benign(0.126) TCGA-63-A5MM-01 5 141517385 141517385 T C NDFIP1 Missense_Mutation p.F153L 0.12 tolerated(0.1) probably_damaging(0.996) TCGA-63-A5MM-01 5 145477783 145477783 T C PLAC8L1 Silent p.A64A 0.14 TCGA-63-A5MM-01 5 147889222 147889222 C - HTR4 Frame_Shift_Del p.Q292Rfs*16 0.10 TCGA-63-A5MM-01 5 149225402 149225402 A T PPARGC1B Nonsense_Mutation p.K966* 0.10 TCGA-63-A5MM-01 5 149585155 149585155 C T SLC6A7 Missense_Mutation p.A557V 0.15 tolerated(0.14) probably_damaging(0.989) TCGA-63-A5MM-01 5 149677745 149677745 A G ARSI Missense_Mutation p.Y248H 0.14 deleterious(0) probably_damaging(0.987) TCGA-63-A5MM-01 5 150056341 150056341 G A MYOZ3 Silent p.E220E 0.21 TCGA-63-A5MM-01 5 150110285 150110285 G A DCTN4 Missense_Mutation p.R255C 0.15 deleterious(0) probably_damaging(0.997) TCGA-63-A5MM-01 5 154292459 154292459 C A GEMIN5 Missense_Mutation p.Q665H 0.20 deleterious(0) probably_damaging(0.998) TCGA-63-A5MM-01 5 154300928 154300928 C - GEMIN5 Frame_Shift_Del p.P480Hfs*63 0.11 TCGA-63-A5MM-01 5 154396604 154396604 G A KIF4B Missense_Mutation p.G1062D 0.12 tolerated(0.62) benign(0) TCGA-63-A5MM-01 5 157078318 157078318 C G SOX30 Missense_Mutation p.D257H 0.09 deleterious(0) probably_damaging(0.994) TCGA-63-A5MM-01 5 159344355 159344355 G A ADRA1B Missense_Mutation p.R148H 0.20 deleterious(0.01) probably_damaging(0.954) TCGA-63-A5MM-01 5 160757996 160757996 G A GABRB2 Missense_Mutation p.A324V 0.17 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 5 162909659 162909659 T A HMMR Nonsense_Mutation p.L466* 0.21 TCGA-63-A5MM-01 5 16682027 16682027 C A MYO10 Missense_Mutation p.R1381M 0.15 deleterious(0) probably_damaging(0.993) TCGA-63-A5MM-01 5 167991059 167991059 C T PANK3 Missense_Mutation p.G216D 0.12 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 5 169694154 169694154 A T LCP2 Intron 0.20 TCGA-63-A5MM-01 5 172661839 172661839 G A NKX2-5 Missense_Mutation p.A83V 0.22 tolerated(0.27) benign(0.001) TCGA-63-A5MM-01 5 176003028 176003028 G A CDHR2 Missense_Mutation p.V346I 0.37 tolerated(0.18) benign(0.056) TCGA-63-A5MM-01 5 176024054 176024054 C T GPRIN1 Missense_Mutation p.A928T 0.16 tolerated(0.06) benign(0.374) TCGA-63-A5MM-01 5 176316482 176316482 C T HK3 Missense_Mutation p.V272I 0.20 tolerated(0.12) benign(0.013) TCGA-63-A5MM-01 5 176397756 176397756 G A UIMC1 Missense_Mutation p.A115V 0.11 deleterious(0) probably_damaging(0.997) TCGA-63-A5MM-01 5 176707703 176707703 C T NSD1 Silent p.C1920C 0.17 TCGA-63-A5MM-01 5 176943347 176943347 G A DDX41 Silent p.G80G 0.10 TCGA-63-A5MM-01 5 177020699 177020699 T C TMED9 Missense_Mutation p.S112P 0.21 deleterious(0) probably_damaging(0.99) TCGA-63-A5MM-01 5 179018730 179018730 G A RUFY1 Silent p.K411K 0.18 TCGA-63-A5MM-01 5 179201567 179201567 G A MAML1 Missense_Mutation p.A914T 0.10 tolerated(0.17) benign(0.02) TCGA-63-A5MM-01 5 179228398 179228398 G A MGAT4B Missense_Mutation p.S180L 0.17 deleterious(0) probably_damaging(0.995) TCGA-63-A5MM-01 5 179751196 179751196 A C GFPT2 Silent p.S262S 0.25 TCGA-63-A5MM-01 5 180057711 180057711 G A FLT4 Nonsense_Mutation p.R82* 0.10 TCGA-63-A5MM-01 5 180166644 180166644 G - OR2Y1 Frame_Shift_Del p.H139Ifs*16 0.12 TCGA-63-A5MM-01 5 19503156 19503156 G C CDH18 Missense_Mutation p.F525L 0.11 deleterious(0.01) benign(0.133) TCGA-63-A5MM-01 5 24593378 24593378 G T CDH10 Nonsense_Mutation p.Y74* 0.11 TCGA-63-A5MM-01 5 26881183 26881183 G A CDH9 3'UTR 0.16 TCGA-63-A5MM-01 5 26881405 26881405 G A CDH9 Missense_Mutation p.T737M 0.11 deleterious(0) possibly_damaging(0.873) TCGA-63-A5MM-01 5 32090358 32090358 T A PDZD2 Silent p.L2268L 0.17 TCGA-63-A5MM-01 5 32098595 32098595 G A PDZD2 Silent p.L2691L 0.15 TCGA-63-A5MM-01 5 33892036 33892036 G A ADAMTS12 5'UTR 0.23 TCGA-63-A5MM-01 5 34941226 34941226 C T DNAJC21 Silent p.D307D 0.10 TCGA-63-A5MM-01 5 35991415 35991415 G A UGT3A1 5'UTR 0.12 TCGA-63-A5MM-01 5 37727092 37727092 C T WDR70 Missense_Mutation p.R608C 0.16 deleterious(0) probably_damaging(0.978) TCGA-63-A5MM-01 5 41004938 41004938 C T MROH2B Missense_Mutation p.A1317T 0.15 tolerated(0.49) benign(0.014) TCGA-63-A5MM-01 5 43039515 43039515 G A ANXA2R 3'UTR 0.15 TCGA-63-A5MM-01 5 665397 665397 C T TPPP Silent p.S160S 0.21 TCGA-63-A5MM-01 5 74651239 74651239 G A HMGCR Missense_Mutation p.G591D 0.14 deleterious(0) probably_damaging(0.994) TCGA-63-A5MM-01 5 76128718 76128718 G A F2RL1 Missense_Mutation p.A96T 0.19 deleterious(0) probably_damaging(0.999) TCGA-63-A5MM-01 5 76359106 76359106 T - AGGF1 3'UTR 0.16 TCGA-63-A5MM-01 5 78350042 78350042 T - DMGDH Frame_Shift_Del p.I169Ffs*10 0.13 TCGA-63-A5MM-01 5 7878057 7878057 T C MTRR Silent p.G161G 0.08 TCGA-63-A5MM-01 5 79950539 79950539 G A DHFR 5'UTR 0.20 TCGA-63-A5MM-01 5 80408553 80408553 C T RASGRF2 Missense_Mutation p.R655W 0.09 deleterious(0) probably_damaging(0.988) TCGA-63-A5MM-01 5 82940452 82940452 G A HAPLN1 Missense_Mutation p.R169C 0.18 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 5 90012308 90012308 A G GPR98 Missense_Mutation p.D3070G 0.17 probably_damaging(0.956) TCGA-63-A5MM-01 5 94805591 94805591 C T TTC37 Nonsense_Mutation p.W1463* 0.21 TCGA-63-A5MM-01 5 96228151 96228151 G A ERAP2 Silent p.A373A 0.12 TCGA-63-A5MM-01 5 96503090 96503090 A - RIOK2 Intron 0.20 TCGA-63-A5MM-01 6 101091910 101091910 T - ASCC3 Frame_Shift_Del p.K1243Nfs*48 0.17 TCGA-63-A5MM-01 6 10626693 10626693 A - GCNT2 Frame_Shift_Del p.K355Sfs*26 0.12 TCGA-63-A5MM-01 6 107390823 107390823 G A BEND3 Silent p.R524R 0.17 TCGA-63-A5MM-01 6 107390922 107390922 G A BEND3 Silent p.G491G 0.17 TCGA-63-A5MM-01 6 110300605 110300605 T C GPR6 Missense_Mutation p.I97T 0.19 deleterious(0) possibly_damaging(0.721) TCGA-63-A5MM-01 6 110636667 110636667 C G METTL24 Missense_Mutation p.M145I 0.13 tolerated(0.25) benign(0.011) TCGA-63-A5MM-01 6 111213519 111213519 A T AMD1 Missense_Mutation p.D163V 0.26 deleterious(0.03) possibly_damaging(0.807) TCGA-63-A5MM-01 6 111901440 111901440 C T TRAF3IP2 Missense_Mutation p.A328T 0.15 tolerated(0.23) benign(0.005) TCGA-63-A5MM-01 6 112457437 112457437 T C LAMA4 Missense_Mutation p.E1101G 0.11 deleterious(0.01) possibly_damaging(0.904) TCGA-63-A5MM-01 6 117198489 117198489 G A RFX6 Silent p.A17A 0.16 TCGA-63-A5MM-01 6 131915317 131915317 C T MED23 Missense_Mutation p.A1052T 0.27 tolerated(0.36) benign(0.038) TCGA-63-A5MM-01 6 137234720 137234720 A G PEX7 3'UTR 0.11 TCGA-63-A5MM-01 6 137519065 137519065 A G IFNGR1 3'UTR 0.21 TCGA-63-A5MM-01 6 1390835 1390835 C T FOXF2 Missense_Mutation p.A218V 0.32 tolerated(0.2) benign(0.361) TCGA-63-A5MM-01 6 139164270 139164270 C T ECT2L Missense_Mutation p.T166M 0.12 deleterious(0) probably_damaging(0.983) TCGA-63-A5MM-01 6 148761514 148761514 C T SASH1 Silent p.S119S 0.08 TCGA-63-A5MM-01 6 151626906 151626906 T A AKAP12 Missense_Mutation p.S63T 0.14 deleterious(0.01) probably_damaging(0.968) TCGA-63-A5MM-01 6 152728198 152728198 C T SYNE1 Missense_Mutation p.S2225N 0.12 benign(0.002) TCGA-63-A5MM-01 6 15410549 15410549 C T JARID2 Silent p.S92S 0.13 TCGA-63-A5MM-01 6 155498041 155498041 A T TIAM2 Missense_Mutation p.D818V 0.15 deleterious(0) possibly_damaging(0.564) TCGA-63-A5MM-01 6 157521849 157521849 G A ARID1B Missense_Mutation p.R1374H 0.19 probably_damaging(0.997) TCGA-63-A5MM-01 6 158487747 158487747 C T SYNJ2 Intron 0.17 TCGA-63-A5MM-01 6 158502316 158502316 C A SYNJ2 Missense_Mutation p.L915I 0.21 tolerated(0.13) possibly_damaging(0.842) TCGA-63-A5MM-01 6 159401961 159401961 C T RSPH3 Missense_Mutation p.R377H 0.09 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 6 159457166 159457166 G A TAGAP Missense_Mutation p.A630V 0.18 tolerated(0.53) benign(0.001) TCGA-63-A5MM-01 6 160553319 160553319 G A SLC22A1 Missense_Mutation p.V191M 0.17 deleterious(0.02) benign(0.378) TCGA-63-A5MM-01 6 16145231 16145231 T A MYLIP Missense_Mutation p.Y311N 0.18 deleterious(0) probably_damaging(0.994) TCGA-63-A5MM-01 6 163984598 163984598 G A QKI Missense_Mutation p.A261T 0.16 tolerated(0.21) benign(0.028) TCGA-63-A5MM-01 6 166836835 166836835 C T RPS6KA2 Missense_Mutation p.R559Q 0.21 deleterious(0.01) probably_damaging(0.952) TCGA-63-A5MM-01 6 167754357 167754357 G A TTLL2 Silent p.T323T 0.09 TCGA-63-A5MM-01 6 168299045 168299045 C T MLLT4 Missense_Mutation p.A493V 0.09 tolerated(0.15) benign(0.008) TCGA-63-A5MM-01 6 168369869 168369869 G A MLLT4 3'Flank 0.17 TCGA-63-A5MM-01 6 168479770 168479770 G A FRMD1 Missense_Mutation p.A2V 0.16 deleterious_low_confidence(0) benign(0.037) TCGA-63-A5MM-01 6 26043832 26043832 A T HIST1H2BB Silent p.A18A 0.17 TCGA-63-A5MM-01 6 26217542 26217542 G A HIST1H2AE Missense_Mutation p.A114T 0.19 tolerated_low_confidence(0.06) benign(0.003) TCGA-63-A5MM-01 6 26250543 26250543 G A HIST1H3F Silent p.C97C 0.17 TCGA-63-A5MM-01 6 26468513 26468513 T C BTN2A1 Silent p.I440I 0.11 TCGA-63-A5MM-01 6 2689102 2689102 C T MYLK4 Silent p.K108K 0.13 TCGA-63-A5MM-01 6 27833284 27833284 A G HIST1H2AL Missense_Mutation p.Y51C 0.05 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-63-A5MM-01 6 28967406 28967406 C A ZNF311 Intron 0.10 TCGA-63-A5MM-01 6 30920908 30920908 G A DPCR1 3'UTR 0.11 TCGA-63-A5MM-01 6 31743783 31743783 G A VWA7 Silent p.T157T 0.16 TCGA-63-A5MM-01 6 31778194 31778194 C T HSPA1L Missense_Mutation p.R519H 0.12 deleterious_low_confidence(0) benign(0.003) TCGA-63-A5MM-01 6 31842534 31842535 - T SLC44A4 Frame_Shift_Ins p.N144Kfs*55 0.11 TCGA-63-A5MM-01 6 31964038 31964038 G A C4A Missense_Mutation p.A1148T 0.10 deleterious(0) probably_damaging(0.953) TCGA-63-A5MM-01 6 32032718 32032718 G A TNXB Missense_Mutation p.P2241S 0.22 benign(0.364) TCGA-63-A5MM-01 6 32063835 32063835 C T TNXB Missense_Mutation p.V599M 0.24 probably_damaging(0.987) TCGA-63-A5MM-01 6 33380026 33380026 C - PHF1 Intron 0.20 TCGA-63-A5MM-01 6 33631649 33631649 C T ITPR3 Silent p.F380F 0.13 TCGA-63-A5MM-01 6 33652141 33652141 C A ITPR3 Missense_Mutation p.Q1649K 0.23 tolerated(0.99) benign(0.002) TCGA-63-A5MM-01 6 35604904 35604904 G A FKBP5 Missense_Mutation p.T46M 0.16 tolerated(0.19) benign(0.015) TCGA-63-A5MM-01 6 36291138 36291138 C T C6orf222 Missense_Mutation p.R468Q 0.17 tolerated(0.06) possibly_damaging(0.776) TCGA-63-A5MM-01 6 36355360 36355360 C T ETV7 5'UTR 0.34 TCGA-63-A5MM-01 6 38650642 38650642 G A GLO1 Silent p.G106G 0.23 TCGA-63-A5MM-01 6 39163733 39163733 C T KCNK5 Missense_Mutation p.A73T 0.21 tolerated(1) benign(0.163) TCGA-63-A5MM-01 6 39278723 39278723 G A KCNK17 Missense_Mutation p.R100C 0.16 deleterious(0) probably_damaging(0.991) TCGA-63-A5MM-01 6 43272416 43272416 A G SLC22A7 Missense_Mutation p.T534A 0.07 tolerated(0.67) benign(0) TCGA-63-A5MM-01 6 43550838 43550838 G T POLH Missense_Mutation p.A78S 0.30 deleterious(0.01) benign(0.313) TCGA-63-A5MM-01 6 44255379 44255379 G A TCTE1 Missense_Mutation p.R62C 0.17 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 6 46659631 46659631 G A TDRD6 Missense_Mutation p.E1256K 0.11 tolerated(0.27) benign(0.002) TCGA-63-A5MM-01 6 46826739 46826739 C - GPR116 Frame_Shift_Del p.W968Gfs*8 0.08 TCGA-63-A5MM-01 6 47846151 47846151 A - PTCHD4 Frame_Shift_Del p.F810Sfs*25 0.11 TCGA-63-A5MM-01 6 51798907 51798907 C T PKHD1 Splice_Site p.X2041_splice 0.16 TCGA-63-A5MM-01 6 52285156 52285156 G A EFHC1 5'UTR 0.14 TCGA-63-A5MM-01 6 53519034 53519034 C T KLHL31 Missense_Mutation p.S346N 0.16 tolerated(0.61) benign(0.001) TCGA-63-A5MM-01 6 56366425 56366425 A G DST Silent p.L3922L 0.22 TCGA-63-A5MM-01 6 56368895 56368895 G A DST Missense_Mutation p.A3866V 0.27 benign(0.435) TCGA-63-A5MM-01 6 56507224 56507224 C A DST Missense_Mutation p.G82V 0.08 benign(0.22) TCGA-63-A5MM-01 6 6167819 6167819 C T F13A1 Missense_Mutation p.E594K 0.28 tolerated(0.21) probably_damaging(0.989) TCGA-63-A5MM-01 6 656713 656713 T C HUS1B Missense_Mutation p.I78V 0.26 deleterious(0) probably_damaging(0.987) TCGA-63-A5MM-01 6 7880293 7880293 G A BMP6 Missense_Mutation p.A451T 0.14 deleterious(0) probably_damaging(0.94) TCGA-63-A5MM-01 6 79724891 79724891 C T PHIP Missense_Mutation p.D478N 0.23 deleterious(0.02) probably_damaging(0.993) TCGA-63-A5MM-01 6 80228462 80228463 - T LCA5 Frame_Shift_Ins p.N50Kfs*3 0.15 TCGA-63-A5MM-01 6 90047958 90047958 A G UBE2J1 Missense_Mutation p.Y132H 0.14 deleterious(0) probably_damaging(0.996) TCGA-63-A5MM-01 6 90513179 90513179 C T MDN1 Missense_Mutation p.R66H 0.18 probably_damaging(0.988) TCGA-63-A5MM-01 6 99353342 99353342 T A FBXL4 Missense_Mutation p.T355S 0.20 tolerated(0.72) benign(0.035) TCGA-63-A5MM-01 7 100028747 100028747 C A MEPCE Missense_Mutation p.S369Y 0.07 deleterious(0.01) possibly_damaging(0.737) TCGA-63-A5MM-01 7 100211276 100211276 G A MOSPD3 Missense_Mutation p.R153H 0.12 tolerated(0.65) benign(0) TCGA-63-A5MM-01 7 100282163 100282163 G A GIGYF1 Silent p.G513G 0.18 TCGA-63-A5MM-01 7 100282432 100282432 C T GIGYF1 Missense_Mutation p.R459H 0.19 deleterious(0.02) unknown(0) TCGA-63-A5MM-01 7 100285139 100285139 G A GIGYF1 Missense_Mutation p.T121M 0.07 deleterious(0.01) unknown(0) TCGA-63-A5MM-01 7 100405078 100405078 A G EPHB4 Missense_Mutation p.V748A 0.17 deleterious(0) probably_damaging(0.976) TCGA-63-A5MM-01 7 100490314 100490314 A T ACHE Silent p.V398V 0.18 TCGA-63-A5MM-01 7 100552204 100552204 A G MUC3A Missense_Mutation p.T319A 0.10 deleterious(0.01) benign(0.425) TCGA-63-A5MM-01 7 105192069 105192069 G A RINT1 Silent p.S462S 0.17 TCGA-63-A5MM-01 7 106508132 106508132 C T PIK3CG Silent p.F42F 0.24 TCGA-63-A5MM-01 7 107427814 107427814 G C SLC26A3 Missense_Mutation p.I292M 0.06 tolerated(0.13) probably_damaging(1) TCGA-63-A5MM-01 7 112423848 112423848 C T TMEM168 Missense_Mutation p.A345T 0.22 tolerated(0.09) probably_damaging(0.929) TCGA-63-A5MM-01 7 112424470 112424470 G A TMEM168 Silent p.C137C 0.19 TCGA-63-A5MM-01 7 117432591 117432591 C A CTTNBP2 Missense_Mutation p.S220I 0.11 deleterious(0.01) probably_damaging(0.912) TCGA-63-A5MM-01 7 121738895 121738895 C T AASS Missense_Mutation p.G478S 0.12 tolerated(0.68) benign(0.001) TCGA-63-A5MM-01 7 123594460 123594460 G A SPAM1 Missense_Mutation p.R279H 0.20 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 7 124469398 124469398 T A POT1 Splice_Site p.X502_splice 0.19 TCGA-63-A5MM-01 7 135073627 135073627 A C CNOT4 Intron 0.12 TCGA-63-A5MM-01 7 141420761 141420761 C T WEE2 Missense_Mutation p.A262V 0.10 deleterious(0) probably_damaging(0.944) TCGA-63-A5MM-01 7 141673379 141673379 G C TAS2R38 Missense_Mutation p.F37L 0.10 tolerated(0.44) benign(0.158) TCGA-63-A5MM-01 7 143956005 143956005 G T OR2A7 Silent p.T239T 0.05 TCGA-63-A5MM-01 7 148080886 148080886 C T CNTNAP2 Silent p.G1207G 0.11 TCGA-63-A5MM-01 7 148709358 148709358 C T PDIA4 Missense_Mutation p.A237T 0.06 deleterious(0) probably_damaging(0.985) TCGA-63-A5MM-01 7 149191117 149191117 G A ZNF746 Silent p.H123H 0.05 TCGA-63-A5MM-01 7 149493542 149493542 G A SSPO RNA 0.16 TCGA-63-A5MM-01 7 150094129 150094129 G T ZNF775 Missense_Mutation p.R187L 0.20 tolerated(0.17) probably_damaging(0.997) TCGA-63-A5MM-01 7 150164028 150164028 G A GIMAP8 Missense_Mutation p.R81H 0.18 tolerated(0.31) benign(0.045) TCGA-63-A5MM-01 7 156476758 156476758 G A LMBR1 3'UTR 0.07 TCGA-63-A5MM-01 7 156516844 156516844 A C LMBR1 Missense_Mutation p.V396G 0.16 deleterious(0) probably_damaging(0.992) TCGA-63-A5MM-01 7 20698763 20698763 G A ABCB5 Intron 0.22 TCGA-63-A5MM-01 7 23351910 23351910 G A IGF2BP3 3'UTR 0.14 TCGA-63-A5MM-01 7 25163331 25163331 T C CYCS Missense_Mutation p.T103A 0.33 deleterious(0.03) benign(0.121) TCGA-63-A5MM-01 7 27134389 27134389 C A HOXA1 Silent p.L226L 0.11 TCGA-63-A5MM-01 7 28996937 28996937 C T AC005013.5 5'Flank 0.11 TCGA-63-A5MM-01 7 31117704 31117704 C A ADCYAP1R1 Missense_Mutation p.P86T 0.12 tolerated(0.11) benign(0.297) TCGA-63-A5MM-01 7 32110103 32110103 C T PDE1C Intron 0.28 TCGA-63-A5MM-01 7 33296971 33296971 G A BBS9 Missense_Mutation p.R189H 0.16 deleterious(0.01) benign(0.04) TCGA-63-A5MM-01 7 35057573 35057573 A T DPY19L1 Missense_Mutation p.I38K 0.18 deleterious(0) possibly_damaging(0.723) TCGA-63-A5MM-01 7 36726324 36726324 C T AOAH Missense_Mutation p.R68K 0.14 tolerated(0.13) benign(0.055) TCGA-63-A5MM-01 7 4169671 4169671 C T SDK1 Silent p.T1357T 0.08 TCGA-63-A5MM-01 7 43916637 43916637 T - URGCP Frame_Shift_Del p.T809Rfs*37 0.18 TCGA-63-A5MM-01 7 43918497 43918497 C T URGCP Missense_Mutation p.A189T 0.19 deleterious(0.04) probably_damaging(0.962) TCGA-63-A5MM-01 7 44150531 44150531 A T AEBP1 Missense_Mutation p.D502V 0.24 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 7 45145079 45145079 T G TBRG4 Silent p.G232G 0.20 TCGA-63-A5MM-01 7 48284241 48284241 T G ABCA13 Missense_Mutation p.F444C 0.10 benign(0.416) TCGA-63-A5MM-01 7 48547496 48547496 G A ABCA13 Missense_Mutation p.A4459T 0.20 probably_damaging(0.993) TCGA-63-A5MM-01 7 5363873 5363873 G A TNRC18 Silent p.G2138G 0.17 TCGA-63-A5MM-01 7 56122107 56122107 G A CCT6A Missense_Mutation p.A83T 0.22 deleterious(0) possibly_damaging(0.791) TCGA-63-A5MM-01 7 56126143 56126143 A - CCT6A Frame_Shift_Del p.I274* 0.16 TCGA-63-A5MM-01 7 56146129 56146129 G A SUMF2 Intron 0.18 TCGA-63-A5MM-01 7 57528976 57528976 C T ZNF716 Missense_Mutation p.T270I 0.20 tolerated(0.05) benign(0.316) TCGA-63-A5MM-01 7 6187486 6187486 G A USP42 Missense_Mutation p.G450D 0.13 deleterious(0) probably_damaging(0.997) TCGA-63-A5MM-01 7 6439778 6439778 T C RAC1 Missense_Mutation p.S102P 0.15 deleterious(0) probably_damaging(0.992) TCGA-63-A5MM-01 7 66264316 66264316 G A KCTD7 Silent p.L245L 0.10 TCGA-63-A5MM-01 7 72081746 72081746 A G TYW1B Missense_Mutation p.F192L 0.07 deleterious(0.01) probably_damaging(0.971) TCGA-63-A5MM-01 7 72722449 72722451 CTT - NSUN5 In_Frame_Del p.K65del 0.17 TCGA-63-A5MM-01 7 75210597 75210597 T A HIP1 Missense_Mutation p.E187V 0.33 deleterious(0) probably_damaging(0.999) TCGA-63-A5MM-01 7 82453672 82453672 T C PCLO Missense_Mutation p.K4826E 0.17 unknown(0) TCGA-63-A5MM-01 7 86468402 86468402 G T GRM3 Silent p.G524G 0.13 TCGA-63-A5MM-01 7 86541455 86541455 C T KIAA1324L Missense_Mutation p.G701D 0.27 deleterious(0.01) probably_damaging(0.988) TCGA-63-A5MM-01 7 86569426 86569426 C T KIAA1324L Missense_Mutation p.M249I 0.18 tolerated(0.09) benign(0.011) TCGA-63-A5MM-01 7 87005004 87005004 C T CROT Missense_Mutation p.A266V 0.14 deleterious(0.01) possibly_damaging(0.597) TCGA-63-A5MM-01 7 88389227 88389227 G A ZNF804B 5'UTR 0.14 TCGA-63-A5MM-01 7 90042324 90042324 G A CLDN12 Missense_Mutation p.A112T 0.20 tolerated(0.39) benign(0.016) TCGA-63-A5MM-01 7 98586466 98586466 C T TRRAP Silent p.G3160G 0.09 TCGA-63-A5MM-01 7 98608688 98608688 T A TRRAP Missense_Mutation p.I3637N 0.10 probably_damaging(0.981) TCGA-63-A5MM-01 7 98609104 98609104 G A TRRAP Silent p.P3747P 0.18 TCGA-63-A5MM-01 7 99752590 99752590 C T C7orf43 3'UTR 0.11 TCGA-63-A5MM-01 7 99771584 99771584 G A GPC2 Missense_Mutation p.R256C 0.22 deleterious(0) probably_damaging(0.991) TCGA-63-A5MM-01 7 99818666 99818666 C T PVRIG Missense_Mutation p.A258V 0.18 tolerated(0.41) benign(0.001) TCGA-63-A5MM-01 8 105509395 105509395 C T LRP12 Missense_Mutation p.R462H 0.15 tolerated(0.08) probably_damaging(0.999) TCGA-63-A5MM-01 8 124195348 124195348 C A FAM83A Silent p.T84T 0.10 TCGA-63-A5MM-01 8 125989611 125989611 G C ZNF572 Missense_Mutation p.Q367H 0.17 tolerated(0.29) benign(0.001) TCGA-63-A5MM-01 8 133584541 133584541 G A LRRC6 3'UTR 0.16 TCGA-63-A5MM-01 8 134225201 134225201 G A WISP1 Missense_Mutation p.C55Y 0.11 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 8 134232957 134232957 C - WISP1 Frame_Shift_Del p.P163Rfs*11 0.17 TCGA-63-A5MM-01 8 139610966 139610966 A G COL22A1 Missense_Mutation p.L1454P 0.15 unknown(0) TCGA-63-A5MM-01 8 143310865 143310865 C T TSNARE1 Missense_Mutation p.A508T 0.09 tolerated(0.31) benign(0.006) TCGA-63-A5MM-01 8 145772822 145772822 C T ARHGAP39 Missense_Mutation p.A550T 0.31 tolerated(0.6) benign(0.007) TCGA-63-A5MM-01 8 17478616 17478616 A G PDGFRL Missense_Mutation p.D137G 0.14 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 8 19263295 19263296 - T CSGALNACT1 Frame_Shift_Ins p.T532Nfs*31 0.22 TCGA-63-A5MM-01 8 2033399 2033399 C T MYOM2 Silent p.D507D 0.24 TCGA-63-A5MM-01 8 22862895 22862895 G A RHOBTB2 Missense_Mutation p.R90H 0.18 deleterious(0) benign(0.103) TCGA-63-A5MM-01 8 24358989 24358989 G A ADAM7 Splice_Site p.X703_splice 0.17 TCGA-63-A5MM-01 8 27145431 27145431 A G TRIM35 Missense_Mutation p.V373A 0.12 tolerated(1) benign(0.001) TCGA-63-A5MM-01 8 30700866 30700866 C A TEX15 Missense_Mutation p.D1890Y 0.18 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 8 35579750 35579750 T C UNC5D Silent p.I380I 0.11 TCGA-63-A5MM-01 8 37556087 37556087 G - ZNF703 Frame_Shift_Del p.G558Afs*24 0.12 TCGA-63-A5MM-01 8 42611956 42611956 T C CHRNA6 Missense_Mutation p.D129G 0.18 deleterious(0.03) benign(0.106) TCGA-63-A5MM-01 8 42914291 42914291 C T FNTA Missense_Mutation p.P86L 0.11 deleterious(0) possibly_damaging(0.738) TCGA-63-A5MM-01 8 56723611 56723611 C A TGS1 Missense_Mutation p.A772D 0.18 deleterious(0) probably_damaging(0.99) TCGA-63-A5MM-01 8 57026204 57026204 C T MOS Missense_Mutation p.R113H 0.15 tolerated(0.31) benign(0.072) TCGA-63-A5MM-01 8 57026326 57026326 G A MOS Silent p.G72G 0.17 TCGA-63-A5MM-01 8 59059300 59059300 C T FAM110B Missense_Mutation p.R171C 0.11 deleterious(0.01) benign(0.001) TCGA-63-A5MM-01 8 61192282 61192282 T C CA8 Silent p.G86G 0.13 TCGA-63-A5MM-01 8 61754308 61754308 G - CHD7 Frame_Shift_Del p.R1548Gfs*11 0.14 TCGA-63-A5MM-01 8 69012009 69012009 G A PREX2 Silent p.Q882Q 0.21 TCGA-63-A5MM-01 8 69028064 69028064 A G PREX2 Missense_Mutation p.N1075D 0.12 tolerated_low_confidence(0.62) benign(0.036) TCGA-63-A5MM-01 8 69445430 69445431 - A C8orf34 Intron 0.31 TCGA-63-A5MM-01 8 72975104 72975104 G T TRPA1 Missense_Mutation p.A246D 0.15 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 8 80677733 80677733 C A HEY1 Missense_Mutation p.G206V 0.09 deleterious(0.01) benign(0.156) TCGA-63-A5MM-01 8 82370930 82370930 T C FABP9 Missense_Mutation p.I85M 0.29 deleterious(0.03) benign(0.227) TCGA-63-A5MM-01 8 85785632 85785632 G T RALYL Nonsense_Mutation p.E242* 0.35 TCGA-63-A5MM-01 8 8747813 8747813 T C MFHAS1 Missense_Mutation p.Y919C 0.08 tolerated(0.08) probably_damaging(0.921) TCGA-63-A5MM-01 8 92374624 92374624 C T SLC26A7 Missense_Mutation p.A453V 0.13 tolerated(1) probably_damaging(0.999) TCGA-63-A5MM-01 8 98656752 98656752 G A MTDH Nonsense_Mutation p.W6* 0.14 TCGA-63-A5MM-01 8 99170503 99170503 C T POP1 3'UTR 0.10 TCGA-63-A5MM-01 9 100085148 100085148 G A CCDC180 Missense_Mutation p.R442H 0.10 tolerated(0.16) benign(0.233) TCGA-63-A5MM-01 9 100364981 100364981 C T TSTD2 Missense_Mutation p.V441I 0.26 tolerated(0.18) benign(0.172) TCGA-63-A5MM-01 9 100616501 100616501 G A FOXE1 Missense_Mutation p.R102H 0.13 deleterious(0) possibly_damaging(0.751) TCGA-63-A5MM-01 9 101216403 101216403 C T GABBR2 Missense_Mutation p.A366T 0.15 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 9 101518865 101518865 C T ANKS6 Silent p.R721R 0.08 TCGA-63-A5MM-01 9 101608327 101608327 G T GALNT12 Silent p.V509V 0.15 TCGA-63-A5MM-01 9 104133250 104133250 C T BAAT Missense_Mutation p.R146H 0.23 deleterious(0.03) benign(0.117) TCGA-63-A5MM-01 9 104171144 104171144 T A ZNF189 Missense_Mutation p.I365N 0.09 deleterious(0) probably_damaging(0.976) TCGA-63-A5MM-01 9 112216851 112216853 CCT - PTPN3 In_Frame_Del p.G98del 0.16 TCGA-63-A5MM-01 9 113496656 113496659 GTGA - MUSK Splice_Site p.X251_splice 0.13 TCGA-63-A5MM-01 9 115965309 115965309 T A FKBP15 Missense_Mutation p.I111F 0.36 deleterious(0.01) possibly_damaging(0.894) TCGA-63-A5MM-01 9 116931403 116931403 T C COL27A1 Missense_Mutation p.V523A 0.15 unknown(0) TCGA-63-A5MM-01 9 117853307 117853307 G - TNC 5'UTR 0.14 TCGA-63-A5MM-01 9 119460751 119460751 G A TRIM32 Missense_Mutation p.A244T 0.28 tolerated(0.6) benign(0.005) TCGA-63-A5MM-01 9 123628334 123628334 C G PHF19 Missense_Mutation p.E251Q 0.07 deleterious(0.02) possibly_damaging(0.886) TCGA-63-A5MM-01 9 130111298 130111298 C T GARNL3 Silent p.G509G 0.33 TCGA-63-A5MM-01 9 132581100 132581100 C A TOR1A Missense_Mutation p.A182S 0.21 tolerated(0.67) benign(0.038) TCGA-63-A5MM-01 9 134064487 134064487 C T NUP214 Silent p.S1181S 0.18 TCGA-63-A5MM-01 9 134357790 134357790 C T PRRC2B Silent p.G1672G 0.16 TCGA-63-A5MM-01 9 136522400 136522400 G - DBH Intron 0.17 TCGA-63-A5MM-01 9 136643932 136643932 G A VAV2 Silent p.G614G 0.38 TCGA-63-A5MM-01 9 137681048 137681048 C T COL5A1 Silent p.G898G 0.29 TCGA-63-A5MM-01 9 138392918 138392918 A G MRPS2 Missense_Mutation p.T40A 0.22 tolerated(0.32) benign(0.003) TCGA-63-A5MM-01 9 138836968 138836968 G A UBAC1 Missense_Mutation p.A261V 0.35 tolerated(0.45) benign(0.005) TCGA-63-A5MM-01 9 139090763 139090763 G A LHX3 Silent p.R204R 0.12 TCGA-63-A5MM-01 9 139906951 139906951 G A ABCA2 Missense_Mutation p.R1725C 0.23 deleterious(0) benign(0.067) TCGA-63-A5MM-01 9 140006371 140006371 G A DPP7 Silent p.G387G 0.32 TCGA-63-A5MM-01 9 140941438 140941438 G A CACNA1B Missense_Mutation p.A1166T 0.36 deleterious(0.04) possibly_damaging(0.681) TCGA-63-A5MM-01 9 317078 317078 T A DOCK8 Nonsense_Mutation p.C259* 0.14 TCGA-63-A5MM-01 9 35748860 35748860 C T GBA2 5'UTR 0.53 TCGA-63-A5MM-01 9 37442152 37442152 C T ZBTB5 Missense_Mutation p.V133I 0.11 tolerated(0.08) benign(0) TCGA-63-A5MM-01 9 446556 446556 C T DOCK8 Missense_Mutation p.H1923Y 0.24 tolerated(0.06) probably_damaging(0.974) TCGA-63-A5MM-01 9 69200180 69200180 G A FOXD4L6 3'UTR 0.28 TCGA-63-A5MM-01 9 6986626 6986626 C T KDM4C Missense_Mutation p.A546V 0.20 tolerated(0.38) benign(0.001) TCGA-63-A5MM-01 9 71854990 71854990 G A TJP2 Silent p.T862T 0.20 TCGA-63-A5MM-01 9 72131137 72131137 G A APBA1 Silent p.G330G 0.13 TCGA-63-A5MM-01 9 73152023 73152023 A T TRPM3 Missense_Mutation p.S1324T 0.33 tolerated_low_confidence(0.14) probably_damaging(0.99) TCGA-63-A5MM-01 9 73457948 73457948 C T TRPM3 Missense_Mutation p.E258K 0.38 deleterious(0) probably_damaging(0.996) TCGA-63-A5MM-01 9 79117617 79117617 G A GCNT1 Missense_Mutation p.R107H 0.12 deleterious(0.01) benign(0.058) TCGA-63-A5MM-01 9 79118164 79118164 C T GCNT1 Silent p.F289F 0.18 TCGA-63-A5MM-01 9 79634892 79634892 C T FOXB2 Missense_Mutation p.R108C 0.32 deleterious(0) unknown(0) TCGA-63-A5MM-01 9 87285540 87285540 G A NTRK2 5'UTR 0.27 TCGA-63-A5MM-01 9 87285743 87285743 G T NTRK2 Missense_Mutation p.R27M 0.14 tolerated(0.29) possibly_damaging(0.769) TCGA-63-A5MM-01 9 90497743 90497743 T A SPATA31E1 5'UTR 0.26 TCGA-63-A5MM-01 9 91972473 91972473 G T SECISBP2 Missense_Mutation p.G754V 0.28 deleterious(0) probably_damaging(1) TCGA-63-A5MM-01 9 99252277 99252277 C - HABP4 Frame_Shift_Del p.N402Tfs*95 0.21 TCGA-63-A5MM-01 X 102508588 102508588 C T TCEAL8 Missense_Mutation p.R107H 0.15 tolerated(0.1) benign(0.063) TCGA-63-A5MM-01 X 110406957 110406957 T C PAK3 Splice_Site p.X292_splice 0.15 TCGA-63-A5MM-01 X 11783953 11783953 C T MSL3 Intron 0.26 TCGA-63-A5MM-01 X 12516823 12516823 G A FRMPD4 Nonsense_Mutation p.W22* 0.19 TCGA-63-A5MM-01 X 127186091 127186091 C T ACTRT1 Missense_Mutation p.R32H 0.22 deleterious(0.04) benign(0) TCGA-63-A5MM-01 X 134025661 134025661 G A MOSPD1 Missense_Mutation p.A153V 0.09 tolerated(0.36) benign(0.001) TCGA-63-A5MM-01 X 147744117 147744117 G T AFF2 Missense_Mutation p.R290I 0.18 deleterious(0) probably_damaging(0.993) TCGA-63-A5MM-01 X 153050799 153050799 C T SRPK3 Missense_Mutation p.R510W 0.24 deleterious(0) probably_damaging(0.92) TCGA-63-A5MM-01 X 153577272 153577272 A T FLNA Missense_Mutation p.V2630D 0.15 deleterious(0) probably_damaging(0.996) TCGA-63-A5MM-01 X 1712726 1712726 G A AKAP17A Missense_Mutation p.R124H 0.29 deleterious(0) probably_damaging(0.984) TCGA-63-A5MM-01 X 1720067 1720067 G A AKAP17A Silent p.Q556Q 0.12 TCGA-63-A5MM-01 X 17743792 17743792 C T NHS Silent p.G501G 0.05 TCGA-63-A5MM-01 X 18802077 18802077 A G PPEF1 Missense_Mutation p.T275A 0.18 deleterious(0.04) benign(0.327) TCGA-63-A5MM-01 X 19013099 19013099 T C GPR64 Silent p.S928S 0.30 TCGA-63-A5MM-01 X 21674976 21674976 C T KLHL34 Missense_Mutation p.A311T 0.25 tolerated(0.56) benign(0.038) TCGA-63-A5MM-01 X 21675293 21675293 C T KLHL34 Missense_Mutation p.R205Q 0.27 tolerated(0.26) benign(0.004) TCGA-63-A5MM-01 X 41029437 41029437 T A USP9X Missense_Mutation p.D942E 0.15 tolerated(0.5) benign(0.108) TCGA-63-A5MM-01 X 44820536 44820536 G A KDM6A Missense_Mutation p.R78H 0.44 tolerated(0.25) benign(0.003) TCGA-63-A5MM-01 X 48542810 48542810 C A WAS Missense_Mutation p.Q91K 0.22 tolerated(1) benign(0.097) TCGA-63-A5MM-01 X 48650295 48650295 G - GATA1 Frame_Shift_Del p.G90Afs*47 0.14 TCGA-63-A5MM-01 X 48935537 48935537 C T WDR45 Missense_Mutation p.R30H 0.14 deleterious(0) benign(0.058) TCGA-63-A5MM-01 X 53105923 53105923 C T GPR173 Silent p.N40N 0.27 TCGA-63-A5MM-01 X 53570827 53570827 G A HUWE1 Missense_Mutation p.A3785V 0.24 unknown(0) TCGA-63-A5MM-01 X 65409588 65409588 G A HEPH Missense_Mutation p.A345T 0.21 tolerated(0.22) possibly_damaging(0.493) TCGA-63-A5MM-01 X 70357214 70357214 G A MED12 Missense_Mutation p.R1910H 0.19 benign(0.397) TCGA-63-A5MM-01 X 70757738 70757738 C T OGT Missense_Mutation p.S93L 0.17 deleterious(0.01) probably_damaging(0.986) TCGA-63-A5MM-01 X 79698584 79698584 C A FAM46D Silent p.P182P 0.20 TCGA-63-A5MM-01 X 9905278 9905278 G A SHROOM2 Missense_Mutation p.C1231Y 0.45 tolerated(0.16) benign(0.005) TCGA-63-A5MN-01 10 100144810 100144810 G A PYROXD2 Silent p.C523C 0.09 TCGA-63-A5MN-01 10 105362588 105362588 T C SH3PXD2A Missense_Mutation p.K768R 0.15 tolerated(0.97) benign(0.007) TCGA-63-A5MN-01 10 26506904 26506904 G A GAD2 Silent p.A90A 0.07 TCGA-63-A5MN-01 11 26681858 26681858 T G ANO3 Missense_Mutation p.V938G 0.08 deleterious(0) possibly_damaging(0.854) TCGA-63-A5MN-01 11 30435784 30435784 T A MPPED2 Missense_Mutation p.I253F 0.09 deleterious(0) probably_damaging(0.977) TCGA-63-A5MN-01 11 32632783 32632783 G T CCDC73 Missense_Mutation p.D975E 0.06 deleterious(0) probably_damaging(0.999) TCGA-63-A5MN-01 11 50003585 50003585 A C OR4C12 Missense_Mutation p.F151L 0.06 tolerated_low_confidence(0.08) benign(0.301) TCGA-63-A5MN-01 12 102154994 102154994 C T GNPTAB Missense_Mutation p.E1016K 0.09 deleterious(0.01) possibly_damaging(0.589) TCGA-63-A5MN-01 12 129559070 129559070 C T TMEM132D Missense_Mutation p.D884N 0.09 tolerated(0.12) possibly_damaging(0.527) TCGA-63-A5MN-01 12 129559071 129559071 G T TMEM132D Missense_Mutation p.S883R 0.09 tolerated(0.67) benign(0.265) TCGA-63-A5MN-01 12 52451220 52451220 G C NR4A1 Missense_Mutation p.W495C 0.13 deleterious(0) probably_damaging(1) TCGA-63-A5MN-01 12 8904615 8904615 G C RIMKLB Missense_Mutation p.V157L 0.07 tolerated(0.13) possibly_damaging(0.75) TCGA-63-A5MN-01 15 101593482 101593483 - C LRRK1 Frame_Shift_Ins p.R1305Pfs*82 0.10 TCGA-63-A5MN-01 15 101827177 101827177 C T SNRPA1 Missense_Mutation p.R132K 0.08 deleterious(0) probably_damaging(1) TCGA-63-A5MN-01 15 92647639 92647639 C T SLCO3A1 Silent p.H292H 0.08 TCGA-63-A5MN-01 16 3025622 3025622 G A PKMYT1 Silent p.C190C 0.13 TCGA-63-A5MN-01 16 58551979 58551979 C T SETD6 Nonsense_Mutation p.Q273* 0.12 TCGA-63-A5MN-01 16 67860440 67860440 G A TSNAXIP1 Nonsense_Mutation p.W405* 0.09 TCGA-63-A5MN-01 16 67866194 67866194 G A CENPT Nonsense_Mutation p.Q76* 0.09 TCGA-63-A5MN-01 16 81134670 81134670 C T GCSH 5'Flank 0.15 TCGA-63-A5MN-01 17 1183279 1183279 G A TUSC5 5'UTR 0.13 TCGA-63-A5MN-01 17 4889554 4889554 G A CAMTA2 Silent p.L11L 0.09 TCGA-63-A5MN-01 17 49072477 49072477 C T SPAG9 Missense_Mutation p.G723S 0.05 tolerated(0.53) benign(0.001) TCGA-63-A5MN-01 17 7366832 7366832 C A ZBTB4 Missense_Mutation p.G490V 0.14 benign(0.201) TCGA-63-A5MN-01 18 31323089 31323089 G A ASXL3 Missense_Mutation p.G1093S 0.11 benign(0.057) TCGA-63-A5MN-01 19 49632191 49632191 G A PPFIA3 Silent p.P143P 0.12 TCGA-63-A5MN-01 19 51294995 51294995 C G ACPT Missense_Mutation p.P129R 0.07 tolerated(0.16) probably_damaging(0.993) TCGA-63-A5MN-01 1 190195359 190195359 T A BRINP3 Missense_Mutation p.I272F 0.17 tolerated(0.09) benign(0.005) TCGA-63-A5MN-01 1 32196412 32196412 C T BAI2 Missense_Mutation p.G1457S 0.08 tolerated(1) probably_damaging(0.999) TCGA-63-A5MN-01 21 46047646 46047646 C G KRTAP10-9 Silent p.V186V 0.11 TCGA-63-A5MN-01 2 31152346 31152346 T C GALNT14 Missense_Mutation p.K361E 0.11 deleterious(0) probably_damaging(0.928) TCGA-63-A5MN-01 3 182698321 182698321 G A DCUN1D1 5'UTR 0.10 TCGA-63-A5MN-01 3 44970889 44970889 A C ZDHHC3 Missense_Mutation p.L245R 0.10 deleterious(0) probably_damaging(0.998) TCGA-63-A5MN-01 4 2172490 2172490 G A POLN Silent p.G490G 0.12 TCGA-63-A5MN-01 4 47939154 47939154 C A CNGA1 Missense_Mutation p.V522F 0.09 deleterious(0) probably_damaging(1) TCGA-63-A5MN-01 5 127614383 127614383 G C FBN2 Missense_Mutation p.T2430S 0.05 tolerated(0.18) probably_damaging(0.964) TCGA-63-A5MN-01 5 140573733 140573733 C T PCDHB10 Silent p.R536R 0.11 TCGA-63-A5MN-01 5 23526898 23526898 C G PRDM9 Silent p.L567L 0.05 TCGA-63-A5MN-01 5 58021897 58021897 T A RAB3C Silent p.I107I 0.12 TCGA-63-A5MN-01 6 155504390 155504390 G T TIAM2 Missense_Mutation p.E940D 0.12 deleterious(0) probably_damaging(0.999) TCGA-63-A5MN-01 7 124510991 124510991 C T POT1 Missense_Mutation p.D77N 0.18 deleterious(0) probably_damaging(0.983) TCGA-63-A5MN-01 8 144943777 144943777 G T EPPK1 Silent p.T1215T 0.23 TCGA-63-A5MN-01 9 116811397 116811398 - T ZNF618 Frame_Shift_Ins p.V514Rfs*100 0.13 TCGA-63-A5MN-01 9 117087409 117087409 G T ORM1 Missense_Mutation p.V173F 0.10 deleterious(0) benign(0.424) TCGA-63-A5MN-01 9 131394747 131394747 T A SPTAN1 Missense_Mutation p.F2333I 0.07 deleterious(0) benign(0.007) TCGA-63-A5MN-01 X 118221973 118221973 T A KIAA1210 Missense_Mutation p.S1074C 0.09 tolerated(0.06) benign(0.034) TCGA-63-A5MN-01 X 128878003 128878003 C T XPNPEP2 Nonsense_Mutation p.Q64* 0.07 TCGA-63-A5MN-01 X 153627698 153627698 A C RPL10 Missense_Mutation p.K15Q 0.10 deleterious(0.01) probably_damaging(0.976) TCGA-63-A5MN-01 X 70462168 70462168 C G ZMYM3 Missense_Mutation p.K1218N 0.18 deleterious(0) probably_damaging(0.998) TCGA-63-A5MN-01 X 79955527 79955527 G A BRWD3 Missense_Mutation p.R958W 0.18 deleterious(0) probably_damaging(0.96) TCGA-63-A5MP-01 10 100401647 100401647 C A HPSE2 Missense_Mutation p.R352L 0.14 tolerated(0.06) probably_damaging(0.999) TCGA-63-A5MP-01 10 116444092 116444092 C T ABLIM1 Missense_Mutation p.M7I 0.34 tolerated_low_confidence(0.52) benign(0.004) TCGA-63-A5MP-01 10 121612571 121612571 T C MCMBP Missense_Mutation p.R189G 0.16 tolerated(0.36) benign(0.001) TCGA-63-A5MP-01 10 129905339 129905339 C T MKI67 Missense_Mutation p.A1589T 0.17 tolerated(0.72) benign(0.167) TCGA-63-A5MP-01 10 29839842 29839842 C T SVIL Missense_Mutation p.E171K 0.13 tolerated(0.09) benign(0.296) TCGA-63-A5MP-01 10 98408604 98408604 C A PIK3AP1 Missense_Mutation p.D333Y 0.14 deleterious(0) possibly_damaging(0.837) TCGA-63-A5MP-01 11 117391948 117391948 C A DSCAML1 Silent p.T430T 0.26 TCGA-63-A5MP-01 11 118390716 118390716 G A KMT2A Missense_Mutation p.R3789H 0.41 probably_damaging(0.914) TCGA-63-A5MP-01 11 119548297 119548297 C T PVRL1 Missense_Mutation p.R234H 0.09 deleterious(0.05) probably_damaging(0.951) TCGA-63-A5MP-01 11 120531010 120531010 C T GRIK4 5'UTR 0.14 TCGA-63-A5MP-01 11 125788594 125788594 G A DDX25 Silent p.G370G 0.29 TCGA-63-A5MP-01 11 126301249 126301249 G T KIRREL3 Intron 0.36 TCGA-63-A5MP-01 11 4388979 4388979 G T OR52B4 Missense_Mutation p.H183N 0.27 deleterious(0.01) benign(0.12) TCGA-63-A5MP-01 11 46831307 46831307 C A CKAP5 Nonsense_Mutation p.G250* 0.24 TCGA-63-A5MP-01 11 5080846 5080846 G T OR52E2 Silent p.P4P 0.11 TCGA-63-A5MP-01 11 55873120 55873120 T G OR8H2 Missense_Mutation p.I201S 0.22 deleterious(0.03) possibly_damaging(0.809) TCGA-63-A5MP-01 11 56086371 56086371 T C OR8K3 Silent p.L197L 0.31 TCGA-63-A5MP-01 11 57381958 57381958 G A SERPING1 Silent p.L469L 0.28 TCGA-63-A5MP-01 11 6461512 6461512 C T HPX Silent p.E73E 0.08 TCGA-63-A5MP-01 11 6912879 6912879 G C OR2D2 Missense_Mutation p.P285A 0.12 deleterious(0) probably_damaging(0.97) TCGA-63-A5MP-01 11 6943022 6943022 G A OR2D3 Missense_Mutation p.V264I 0.10 deleterious(0.01) possibly_damaging(0.764) TCGA-63-A5MP-01 11 75507557 75507557 G A DGAT2 Missense_Mutation p.R205K 0.28 deleterious(0) probably_damaging(0.999) TCGA-63-A5MP-01 11 76893006 76893006 C A MYO7A Silent p.R972R 0.20 TCGA-63-A5MP-01 11 89133548 89133548 C T NOX4 Splice_Site p.X283_splice 0.16 TCGA-63-A5MP-01 11 93517650 93517650 G A MED17 5'UTR 0.26 TCGA-63-A5MP-01 11 93913275 93913275 G A PANX1 Silent p.L351L 0.17 TCGA-63-A5MP-01 12 100704836 100704836 G T SCYL2 Missense_Mutation p.L165F 0.13 deleterious(0.02) benign(0.434) TCGA-63-A5MP-01 12 113629151 113629151 G A RITA1 Silent p.S113S 0.32 TCGA-63-A5MP-01 12 117660643 117660643 C G NOS1 Silent p.L1318L 0.13 TCGA-63-A5MP-01 12 117725950 117725950 G A NOS1 Silent p.D352D 0.22 TCGA-63-A5MP-01 12 131456056 131456056 G T GPR133 Missense_Mutation p.V81F 0.25 deleterious_low_confidence(0.04) possibly_damaging(0.482) TCGA-63-A5MP-01 12 132249069 132249069 C T SFSWAP Missense_Mutation p.R597C 0.19 deleterious(0) probably_damaging(0.999) TCGA-63-A5MP-01 12 44180500 44180500 A G IRAK4 Silent p.Q455Q 0.11 TCGA-63-A5MP-01 12 49416489 49416489 C T KMT2D Missense_Mutation p.G5408S 0.28 unknown(0) TCGA-63-A5MP-01 12 53946322 53946322 T C ATF7 Intron 0.23 TCGA-63-A5MP-01 12 6778241 6778241 C A ZNF384 Missense_Mutation p.A430S 0.30 tolerated(0.05) probably_damaging(0.989) TCGA-63-A5MP-01 12 71033029 71033029 A T PTPRR Missense_Mutation p.Y637N 0.15 deleterious(0) probably_damaging(0.994) TCGA-63-A5MP-01 12 79990295 79990295 T C PAWR Missense_Mutation p.E276G 0.45 deleterious(0) probably_damaging(0.943) TCGA-63-A5MP-01 12 82147941 82147941 G C PPFIA2 Silent p.S20S 0.17 TCGA-63-A5MP-01 13 19751108 19751108 G T TUBA3C Missense_Mutation p.R339S 0.20 deleterious_low_confidence(0.03) benign(0.052) TCGA-63-A5MP-01 13 79940945 79940945 C A RBM26 Missense_Mutation p.V320L 0.30 tolerated(0.15) probably_damaging(0.935) TCGA-63-A5MP-01 14 102028158 102028158 T G DIO3 Missense_Mutation p.C109G 0.14 deleterious(0.03) probably_damaging(0.922) TCGA-63-A5MP-01 14 20216285 20216285 C T OR4Q3 Silent p.G233G 0.35 TCGA-63-A5MP-01 14 33004816 33004816 A G AKAP6 Silent p.T127T 0.36 TCGA-63-A5MP-01 14 60097295 60097295 G T RTN1 Intron 0.22 TCGA-63-A5MP-01 14 64428246 64428246 T C SYNE2 Missense_Mutation p.V264A 0.68 probably_damaging(0.993) TCGA-63-A5MP-01 14 75230585 75230585 A T YLPM1 Missense_Mutation p.Q131H 0.24 unknown(0) TCGA-63-A5MP-01 14 96731084 96731084 C G BDKRB1 3'UTR 0.14 TCGA-63-A5MP-01 15 34649700 34649700 C A NUTM1 3'UTR 0.40 TCGA-63-A5MP-01 15 41862319 41862319 C A TYRO3 Silent p.I449I 0.11 TCGA-63-A5MP-01 15 62948280 62948280 G A TLN2 Missense_Mutation p.V219I 0.07 deleterious(0.01) benign(0.202) TCGA-63-A5MP-01 15 64365201 64365201 G A FAM96A Nonsense_Mutation p.R138* 0.09 TCGA-63-A5MP-01 15 72534963 72534963 G - PARP6 Frame_Shift_Del p.Q547Rfs*15 0.23 TCGA-63-A5MP-01 15 78923453 78923453 C T CHRNB4 Silent p.K108K 0.17 TCGA-63-A5MP-01 15 84581879 84581879 C A ADAMTSL3 Missense_Mutation p.T579K 0.16 deleterious(0.02) probably_damaging(0.95) TCGA-63-A5MP-01 15 86122265 86122265 G A AKAP13 Silent p.P322P 0.07 TCGA-63-A5MP-01 16 107156 107156 G C SNRNP25 3'UTR 0.29 TCGA-63-A5MP-01 16 31927618 31927618 C G ZNF267 Missense_Mutation p.T683S 0.09 tolerated(0.13) benign(0.148) TCGA-63-A5MP-01 16 72830194 72830194 G T ZFHX3 Silent p.A2129A 0.13 TCGA-63-A5MP-01 17 2323158 2323158 T A METTL16 3'UTR 0.18 TCGA-63-A5MP-01 17 2583468 2583468 A G PAFAH1B1 Missense_Mutation p.D338G 0.30 deleterious(0.01) benign(0.037) TCGA-63-A5MP-01 17 32963149 32963149 A T TMEM132E Missense_Mutation p.S611C 0.17 deleterious(0) probably_damaging(0.997) TCGA-63-A5MP-01 17 45909332 45909332 A C LRRC46 5'UTR 0.21 TCGA-63-A5MP-01 17 48546048 48546048 G A CHAD Silent p.L43L 0.12 TCGA-63-A5MP-01 17 5015119 5015119 G C ZNF232 5'UTR 0.19 TCGA-63-A5MP-01 17 66917617 66917617 A C ABCA8 Missense_Mutation p.I506M 0.10 deleterious(0) possibly_damaging(0.521) TCGA-63-A5MP-01 17 7578239 7578239 C A TP53 Nonsense_Mutation p.E204* 0.43 TCGA-63-A5MP-01 17 77711009 77711009 C G ENPP7 Missense_Mutation p.P399R 0.15 deleterious(0) probably_damaging(1) TCGA-63-A5MP-01 17 78971058 78971058 C A CHMP6 Intron 0.21 TCGA-63-A5MP-01 17 9757840 9757840 T G GLP2R Missense_Mutation p.L178W 0.32 deleterious(0) probably_damaging(1) TCGA-63-A5MP-01 18 31314324 31314324 G A ASXL3 Missense_Mutation p.E343K 0.13 probably_damaging(0.999) TCGA-63-A5MP-01 18 77067108 77067108 G A ATP9B Silent p.V549V 0.21 TCGA-63-A5MP-01 19 1049343 1049343 C T ABCA7 Missense_Mutation p.P820L 0.25 tolerated(0.25) benign(0.014) TCGA-63-A5MP-01 19 12298132 12298132 T C ZNF136 Silent p.C313C 0.31 TCGA-63-A5MP-01 19 14208475 14208475 G T PRKACA Missense_Mutation p.F186L 0.37 deleterious(0.04) probably_damaging(0.933) TCGA-63-A5MP-01 19 15121778 15121778 G T CCDC105 Missense_Mutation p.W47C 0.23 deleterious(0) probably_damaging(0.956) TCGA-63-A5MP-01 19 17122297 17122297 T A CPAMD8 Missense_Mutation p.N202Y 0.16 deleterious(0) possibly_damaging(0.477) TCGA-63-A5MP-01 19 18234881 18234881 G T MAST3 Missense_Mutation p.A227S 0.45 tolerated(0.19) benign(0.038) TCGA-63-A5MP-01 19 37383109 37383109 C T ZNF829 Missense_Mutation p.R276H 0.15 tolerated(0.57) benign(0.066) TCGA-63-A5MP-01 19 38798387 38798387 G A YIF1B Missense_Mutation p.S182F 0.29 deleterious(0) probably_damaging(0.976) TCGA-63-A5MP-01 19 51191185 51191185 T C SHANK1 Missense_Mutation p.K768R 0.16 benign(0.064) TCGA-63-A5MP-01 19 54314480 54314480 C G NLRP12 Missense_Mutation p.A145P 0.34 deleterious(0) probably_damaging(0.986) TCGA-63-A5MP-01 19 54377624 54377624 C T MYADM Missense_Mutation p.R281C 0.16 deleterious(0.05) possibly_damaging(0.505) TCGA-63-A5MP-01 19 54778548 54778548 C T LILRB2 Missense_Mutation p.A596T 0.30 tolerated(0.06) benign(0.015) TCGA-63-A5MP-01 19 55264150 55264150 C T KIR2DL3 3'UTR 0.20 TCGA-63-A5MP-01 19 5604944 5604944 C T SAFB2 Missense_Mutation p.V434I 0.12 deleterious(0.05) benign(0.093) TCGA-63-A5MP-01 19 57640474 57640474 A G USP29 Missense_Mutation p.Q144R 0.31 tolerated(0.17) possibly_damaging(0.813) TCGA-63-A5MP-01 19 9085128 9085128 C A MUC16 Missense_Mutation p.L2229F 0.22 unknown(0) TCGA-63-A5MP-01 1 102302506 102302506 C A OLFM3 Missense_Mutation p.V49F 0.36 deleterious(0) probably_damaging(0.999) TCGA-63-A5MP-01 1 109385773 109385773 A G AKNAD1 Silent p.G454G 0.18 TCGA-63-A5MP-01 1 1290332 1290332 C T MXRA8 Missense_Mutation p.A227T 0.38 deleterious(0.03) probably_damaging(0.965) TCGA-63-A5MP-01 1 149784930 149784930 C G HIST2H3D Missense_Mutation p.G103R 0.11 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-63-A5MP-01 1 152733648 152733648 C G KPRP Silent p.P528P 0.33 TCGA-63-A5MP-01 1 152884053 152884053 C A IVL 3'UTR 0.16 TCGA-63-A5MP-01 1 154516492 154516492 T A TDRD10 Missense_Mutation p.L186Q 0.31 deleterious(0.02) probably_damaging(0.98) TCGA-63-A5MP-01 1 157509045 157509045 C A FCRL5 Silent p.L411L 0.26 TCGA-63-A5MP-01 1 158670062 158670062 G T OR6K2 Missense_Mutation p.S127R 0.14 tolerated(1) benign(0.001) TCGA-63-A5MP-01 1 175046517 175046517 C T TNN Intron 0.08 TCGA-63-A5MP-01 1 176857214 176857214 G A ASTN1 Nonsense_Mutation p.Q1023* 0.19 TCGA-63-A5MP-01 1 192544948 192544948 C A RGS1 Missense_Mutation p.P9Q 0.15 deleterious_low_confidence(0) benign(0.241) TCGA-63-A5MP-01 1 197072149 197072149 G A ASPM Nonsense_Mutation p.R2078* 0.10 TCGA-63-A5MP-01 1 215933118 215933118 T A USH2A Silent p.P3705P 0.09 TCGA-63-A5MP-01 1 216896759 216896759 G T ESRRG 5'UTR 0.24 TCGA-63-A5MP-01 1 228509548 228509548 G A OBSCN Silent p.E5959E 0.31 TCGA-63-A5MP-01 1 246805240 246805240 T C CNST Intron 0.15 TCGA-63-A5MP-01 1 248202464 248202464 G A OR2L2 Missense_Mutation p.A299T 0.11 deleterious(0) benign(0.421) TCGA-63-A5MP-01 1 26524215 26524215 C T CATSPER4 Silent p.I166I 0.39 TCGA-63-A5MP-01 1 27106581 27106582 - G ARID1A Frame_Shift_Ins p.A2065Gfs*34 0.20 TCGA-63-A5MP-01 1 50884515 50884515 G A DMRTA2 Missense_Mutation p.A484V 0.38 deleterious(0.01) unknown(0) TCGA-63-A5MP-01 1 57171813 57171813 G A PRKAA2 Missense_Mutation p.G448S 0.12 tolerated(0.24) benign(0.02) TCGA-63-A5MP-01 1 62740744 62740744 G A KANK4 Missense_Mutation p.S11F 0.19 tolerated(0.18) benign(0.001) TCGA-63-A5MP-01 1 77763374 77763374 T A AK5 Silent p.L182L 0.42 TCGA-63-A5MP-01 20 13866995 13866995 A G SEL1L2 Missense_Mutation p.L280S 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-63-A5MP-01 20 2841634 2841634 C T VPS16 Missense_Mutation p.P217S 0.14 tolerated(0.22) benign(0.079) TCGA-63-A5MP-01 20 32000541 32000541 C T SNTA1 Missense_Mutation p.R250K 0.11 deleterious(0.05) benign(0.072) TCGA-63-A5MP-01 20 33337566 33337566 T C NCOA6 Missense_Mutation p.D811G 0.10 possibly_damaging(0.697) TCGA-63-A5MP-01 20 39974636 39974636 G A LPIN3 Splice_Site p.X64_splice 0.08 TCGA-63-A5MP-01 20 42143746 42143746 G T L3MBTL1 Silent p.A178A 0.10 TCGA-63-A5MP-01 20 5283037 5283037 G T PROKR2 Silent p.R268R 0.18 TCGA-63-A5MP-01 20 55909089 55909089 G A SPO11 Missense_Mutation p.V150I 0.13 tolerated(0.09) possibly_damaging(0.826) TCGA-63-A5MP-01 20 62904733 62904733 C T PCMTD2 Missense_Mutation p.T289M 0.13 deleterious(0.01) possibly_damaging(0.849) TCGA-63-A5MP-01 21 45959161 45959161 G A KRTAP10-1 3'UTR 0.28 TCGA-63-A5MP-01 22 19210233 19210233 T C CLTCL1 Missense_Mutation p.R798G 0.40 deleterious(0) benign(0.099) TCGA-63-A5MP-01 22 20458145 20458145 G A RIMBP3 Missense_Mutation p.R1053W 0.09 deleterious(0.02) benign(0.008) TCGA-63-A5MP-01 22 50724487 50724487 C A PLXNB2 Missense_Mutation p.D640Y 0.17 tolerated(0.09) possibly_damaging(0.855) TCGA-63-A5MP-01 2 176988770 176988770 A G HOXD9 Missense_Mutation p.Y309C 0.12 deleterious(0) probably_damaging(0.963) TCGA-63-A5MP-01 2 179576743 179576743 T A TTN Missense_Mutation p.S9272C 0.09 TCGA-63-A5MP-01 2 179650584 179650584 T C TTN Missense_Mutation p.I787M 0.28 TCGA-63-A5MP-01 2 198571800 198571800 C A MARS2 Missense_Mutation p.F557L 0.11 tolerated(0.14) benign(0.002) TCGA-63-A5MP-01 2 198948626 198948626 C T PLCL1 Missense_Mutation p.R129C 0.10 deleterious(0) probably_damaging(1) TCGA-63-A5MP-01 2 201814348 201814348 G A ORC2 Missense_Mutation p.S86F 0.25 tolerated(0.1) possibly_damaging(0.541) TCGA-63-A5MP-01 2 203620300 203620300 A T FAM117B Missense_Mutation p.I334F 0.12 deleterious(0.02) possibly_damaging(0.766) TCGA-63-A5MP-01 2 208993181 208993181 G T CRYGC Silent p.R91R 0.15 TCGA-63-A5MP-01 2 26698851 26698851 G A OTOF Silent p.A974A 0.08 TCGA-63-A5MP-01 2 27447964 27447964 C T CAD Silent p.A491A 0.18 TCGA-63-A5MP-01 2 29268268 29268268 G A FAM179A Missense_Mutation p.R905H 0.11 tolerated(0.19) benign(0.133) TCGA-63-A5MP-01 2 32449679 32449679 C G NLRC4 Missense_Mutation p.D980H 0.14 tolerated(0.14) possibly_damaging(0.815) TCGA-63-A5MP-01 2 45704200 45704200 G A SRBD1 Missense_Mutation p.R661C 0.28 deleterious(0) probably_damaging(0.998) TCGA-63-A5MP-01 2 46739687 46739687 T A ATP6V1E2 Missense_Mutation p.E55V 0.07 deleterious(0.03) benign(0.223) TCGA-63-A5MP-01 2 54093354 54093354 C G PSME4 Missense_Mutation p.V1802L 0.17 deleterious(0.02) possibly_damaging(0.897) TCGA-63-A5MP-01 2 73303282 73303282 C T RAB11FIP5 Missense_Mutation p.A533T 0.21 tolerated(0.24) benign(0.001) TCGA-63-A5MP-01 3 119462991 119462991 G A MAATS1 Missense_Mutation p.R617Q 0.10 deleterious(0.01) possibly_damaging(0.815) TCGA-63-A5MP-01 3 119528930 119528930 C T NR1I2 Missense_Mutation p.R113W 0.17 deleterious(0.02) benign(0.284) TCGA-63-A5MP-01 3 124174049 124174049 T C KALRN Missense_Mutation p.L1191P 0.13 deleterious(0) probably_damaging(0.997) TCGA-63-A5MP-01 3 124210182 124210182 G T KALRN Missense_Mutation p.G1532C 0.12 deleterious(0.02) probably_damaging(0.989) TCGA-63-A5MP-01 3 12623614 12623614 G C MKRN2 Splice_Site p.X372_splice 0.31 TCGA-63-A5MP-01 3 148459707 148459707 T C AGTR1 Silent p.N295N 0.13 TCGA-63-A5MP-01 3 170906563 170906563 A G TNIK Silent p.I189I 0.08 TCGA-63-A5MP-01 3 183585774 183585774 G A PARL Missense_Mutation p.P67L 0.41 tolerated(0.32) benign(0) TCGA-63-A5MP-01 3 189681755 189681755 T A LEPREL1 Nonsense_Mutation p.R676* 0.06 TCGA-63-A5MP-01 3 44945471 44945471 G A TGM4 Missense_Mutation p.R356Q 0.13 tolerated(0.62) benign(0.014) TCGA-63-A5MP-01 3 47458852 47458852 C T SCAP Nonsense_Mutation p.W971* 0.29 TCGA-63-A5MP-01 3 51751815 51751815 A C GRM2 Missense_Mutation p.S843R 0.39 deleterious(0.04) benign(0.04) TCGA-63-A5MP-01 3 78696802 78696802 G C ROBO1 Missense_Mutation p.P939R 0.32 tolerated(0.05) possibly_damaging(0.473) TCGA-63-A5MP-01 4 13605553 13605553 T A BOD1L1 Nonsense_Mutation p.R991* 0.22 TCGA-63-A5MP-01 4 16025928 16025928 T C PROM1 Silent p.T228T 0.21 TCGA-63-A5MP-01 4 16025929 16025929 G T PROM1 Missense_Mutation p.T228K 0.21 deleterious(0.05) benign(0.09) TCGA-63-A5MP-01 4 187005915 187005915 G A TLR3 Missense_Mutation p.R868K 0.14 tolerated(0.12) probably_damaging(0.951) TCGA-63-A5MP-01 4 42895653 42895653 A G GRXCR1 Missense_Mutation p.T124A 0.12 tolerated(0.97) benign(0) TCGA-63-A5MP-01 4 49040178 49040178 C A CWH43 Missense_Mutation p.T595N 0.21 deleterious(0.01) benign(0.444) TCGA-63-A5MP-01 4 493021 493021 C A PIGG 5'UTR 0.36 TCGA-63-A5MP-01 4 62812638 62812638 T G LPHN3 Missense_Mutation p.I741S 0.20 deleterious(0) possibly_damaging(0.752) TCGA-63-A5MP-01 4 6292977 6292977 C T WFS1 Silent p.L172L 0.30 TCGA-63-A5MP-01 4 69179846 69179846 G A YTHDC1 Nonsense_Mutation p.R719* 0.27 TCGA-63-A5MP-01 4 7817805 7817805 T A AFAP1 Missense_Mutation p.S282C 0.34 deleterious(0) probably_damaging(0.972) TCGA-63-A5MP-01 4 87724881 87724881 C T PTPN13 Silent p.N2180N 0.16 TCGA-63-A5MP-01 5 118433767 118433767 G T DMXL1 Nonsense_Mutation p.G61* 0.22 TCGA-63-A5MP-01 5 1219777 1219777 C A SLC6A19 Missense_Mutation p.D512E 0.14 tolerated(0.28) probably_damaging(0.977) TCGA-63-A5MP-01 5 13714596 13714596 C T DNAH5 Missense_Mutation p.G4348E 0.23 probably_damaging(0.982) TCGA-63-A5MP-01 5 143586370 143586370 C A KCTD16 Silent p.V31V 0.28 TCGA-63-A5MP-01 5 157065683 157065683 G T SOX30 Missense_Mutation p.P479T 0.28 tolerated(0.28) benign(0.038) TCGA-63-A5MP-01 5 15936700 15936700 C T FBXL7 Missense_Mutation p.A294V 0.10 tolerated(0.37) probably_damaging(0.991) TCGA-63-A5MP-01 5 161128728 161128728 G T GABRA6 Missense_Mutation p.W437C 0.18 deleterious(0) probably_damaging(0.998) TCGA-63-A5MP-01 5 178418982 178418982 C A GRM6 Missense_Mutation p.A203S 0.38 deleterious(0) probably_damaging(0.998) TCGA-63-A5MP-01 5 21975400 21975400 C A CDH12 Missense_Mutation p.G109V 0.16 deleterious(0) probably_damaging(1) TCGA-63-A5MP-01 5 33637684 33637684 G T ADAMTS12 Missense_Mutation p.P629Q 0.34 tolerated(0.26) benign(0.021) TCGA-63-A5MP-01 5 3599578 3599578 G C IRX1 Silent p.T172T 0.40 TCGA-63-A5MP-01 5 40979881 40979881 G T C7 Silent p.L740L 0.44 TCGA-63-A5MP-01 5 41057211 41057211 C G MROH2B Missense_Mutation p.A307P 0.40 deleterious(0.01) benign(0.042) TCGA-63-A5MP-01 5 49963911 49963911 G A PARP8 Missense_Mutation p.R33K 0.19 tolerated_low_confidence(0.18) benign(0.013) TCGA-63-A5MP-01 6 107390898 107390898 G A BEND3 Silent p.Y499Y 0.15 TCGA-63-A5MP-01 6 116757551 116757551 C G DSE Silent p.P640P 0.14 TCGA-63-A5MP-01 6 129905193 129905193 A G ARHGAP18 Missense_Mutation p.I593T 0.08 deleterious(0) possibly_damaging(0.905) TCGA-63-A5MP-01 6 145948764 145948764 C T EPM2A Missense_Mutation p.V262M 0.20 deleterious(0) probably_damaging(0.996) TCGA-63-A5MP-01 6 151089788 151089788 C A PLEKHG1 Nonsense_Mutation p.C142* 0.38 TCGA-63-A5MP-01 6 27369043 27369043 C G ZNF391 Missense_Mutation p.I298M 0.17 deleterious(0) possibly_damaging(0.629) TCGA-63-A5MP-01 6 33694512 33694512 C T IP6K3 Silent p.R195R 0.17 TCGA-63-A5MP-01 6 35278236 35278236 G A DEF6 Missense_Mutation p.V80M 0.10 deleterious(0) possibly_damaging(0.901) TCGA-63-A5MP-01 6 39284616 39284616 C T KCNK16 Silent p.E201E 0.19 TCGA-63-A5MP-01 6 41740548 41740548 G - FRS3 Frame_Shift_Del p.Q135Sfs*6 0.14 TCGA-63-A5MP-01 6 43109445 43109445 G A PTK7 Missense_Mutation p.G561E 0.22 deleterious(0) probably_damaging(0.998) TCGA-63-A5MP-01 6 50681795 50681795 C T TFAP2D Silent p.V9V 0.38 TCGA-63-A5MP-01 6 70034809 70034809 G C BAI3 Missense_Mutation p.A954P 0.31 deleterious(0) probably_damaging(0.999) TCGA-63-A5MP-01 6 73787159 73787159 G T KCNQ5 Missense_Mutation p.R244L 0.21 deleterious(0) probably_damaging(0.998) TCGA-63-A5MP-01 6 74533259 74533259 C G CD109 Missense_Mutation p.R1414G 0.08 tolerated(0.45) benign(0) TCGA-63-A5MP-01 6 90411310 90411310 C A MDN1 Missense_Mutation p.L2798F 0.09 possibly_damaging(0.901) TCGA-63-A5MP-01 7 107114767 107114767 G - GPR22 Frame_Shift_Del p.D88Mfs*2 0.17 TCGA-63-A5MP-01 7 128489435 128489435 G A FLNC Missense_Mutation p.V1668M 0.14 deleterious(0) probably_damaging(1) TCGA-63-A5MP-01 7 137237200 137237200 G C DGKI Missense_Mutation p.P688A 0.20 tolerated(0.21) possibly_damaging(0.757) TCGA-63-A5MP-01 7 137590560 137590560 T C CREB3L2 Missense_Mutation p.E268G 0.15 deleterious(0) probably_damaging(0.979) TCGA-63-A5MP-01 7 139827324 139827324 G C KDM7A Missense_Mutation p.L207V 0.18 deleterious(0.02) probably_damaging(0.951) TCGA-63-A5MP-01 7 140373913 140373913 G A ADCK2 Silent p.R261R 0.17 TCGA-63-A5MP-01 7 150217158 150217158 A T GIMAP7 Missense_Mutation p.E32D 0.17 tolerated(0.09) benign(0.008) TCGA-63-A5MP-01 7 151970854 151970854 G T KMT2C Silent p.T316T 0.06 TCGA-63-A5MP-01 7 157959784 157959784 G T PTPRN2 Missense_Mutation p.A250D 0.10 tolerated(0.25) benign(0.008) TCGA-63-A5MP-01 7 17378874 17378874 T C AHR Silent p.T475T 0.10 TCGA-63-A5MP-01 7 35293103 35293103 A C TBX20 Splice_Site p.X43_splice 0.24 TCGA-63-A5MP-01 7 45697363 45697363 C T ADCY1 Missense_Mutation p.R396C 0.28 deleterious(0) probably_damaging(1) TCGA-63-A5MP-01 7 90613461 90613461 A T CDK14 Splice_Site p.X298_splice 0.09 TCGA-63-A5MP-01 7 92143257 92143257 G C PEX1 Missense_Mutation p.L422V 0.12 deleterious(0.03) benign(0.285) TCGA-63-A5MP-01 7 95705465 95705465 G C DYNC1I1 Missense_Mutation p.G553R 0.17 deleterious(0.02) benign(0.008) TCGA-63-A5MP-01 8 100519411 100519411 C A VPS13B Intron 0.11 TCGA-63-A5MP-01 8 117783815 117783815 G T UTP23 Nonsense_Mutation p.E162* 0.23 TCGA-63-A5MP-01 8 133187838 133187838 C A KCNQ3 Missense_Mutation p.W265C 0.10 deleterious(0) probably_damaging(1) TCGA-63-A5MP-01 8 144995187 144995187 C A PLEC Silent p.T3071T 0.06 TCGA-63-A5MP-01 8 145697592 145697592 G A KIFC2 Silent p.R519R 0.16 TCGA-63-A5MP-01 8 145732168 145732168 G A GPT Missense_Mutation p.G448S 0.18 deleterious(0) probably_damaging(1) TCGA-63-A5MP-01 8 24208815 24208816 CC - ADAM28 Frame_Shift_Del p.Q725Rfs*11 0.21 TCGA-63-A5MP-01 8 38839244 38839244 G T HTRA4 Missense_Mutation p.V358F 0.55 deleterious(0) benign(0.221) TCGA-63-A5MP-01 8 59404077 59404077 G A CYP7A1 Missense_Mutation p.P491L 0.10 deleterious(0) probably_damaging(1) TCGA-63-A5MP-01 8 72987562 72987562 T G TRPA1 Missense_Mutation p.D28A 0.20 tolerated(0.38) benign(0.003) TCGA-63-A5MP-01 8 74917086 74917086 A C LY96 Missense_Mutation p.R56S 0.13 deleterious(0.03) benign(0) TCGA-63-A5MP-01 8 77618659 77618659 C T ZFHX4 Missense_Mutation p.A779V 0.13 possibly_damaging(0.682) TCGA-63-A5MP-01 8 85441692 85441692 G C RALYL Missense_Mutation p.G59R 0.17 deleterious(0) probably_damaging(1) TCGA-63-A5MP-01 8 87738875 87738875 G T CNGB3 Silent p.S74S 0.18 TCGA-63-A5MP-01 9 128420046 128420047 - T MAPKAP1 Frame_Shift_Ins p.S128Ifs*28 0.19 TCGA-63-A5MP-01 9 129851248 129851248 C T ANGPTL2 Missense_Mutation p.M484I 0.12 deleterious(0.01) probably_damaging(0.977) TCGA-63-A5MP-01 9 130868693 130868693 C A SLC25A25 Missense_Mutation p.A357D 0.25 deleterious(0) probably_damaging(0.966) TCGA-63-A5MP-01 9 139887626 139887626 G A C9orf142 Missense_Mutation p.A118T 0.30 tolerated(0.07) benign(0.273) TCGA-63-A5MP-01 9 35095175 35095175 T C PIGO Missense_Mutation p.T130A 0.12 tolerated(0.1) benign(0.302) TCGA-63-A5MP-01 X 105277413 105277413 C G SERPINA7 3'UTR 0.19 TCGA-63-A5MP-01 X 107978977 107978977 C T IRS4 Missense_Mutation p.E200K 0.22 tolerated(0.06) possibly_damaging(0.588) TCGA-63-A5MP-01 X 14599348 14599348 C A GLRA2 Nonsense_Mutation p.S105* 0.23 TCGA-63-A5MP-01 X 149826371 149826371 C T MTM1 Silent p.D377D 0.67 TCGA-63-A5MP-01 X 20030603 20030603 C T MAP7D2 Missense_Mutation p.A646T 0.40 tolerated(0.17) unknown(0) TCGA-63-A5MP-01 X 31089982 31089982 T C FTHL17 Missense_Mutation p.Y30C 0.23 tolerated(0.05) possibly_damaging(0.817) TCGA-63-A5MP-01 X 34961524 34961524 C G FAM47B Silent p.P192P 0.34 TCGA-63-A5MP-01 X 5827109 5827109 G T NLGN4X Missense_Mutation p.S266Y 0.42 deleterious(0) probably_damaging(0.998) TCGA-63-A5MP-01 X 65413451 65413451 T C HEPH Missense_Mutation p.L501S 0.36 tolerated(0.77) benign(0.01) TCGA-63-A5MP-01 X 91134281 91134281 C T PCDH11X Intron 0.64 TCGA-63-A5MR-01 10 114045969 114045969 G A TECTB Silent p.Q136Q 0.09 TCGA-63-A5MR-01 10 37508655 37508655 C G ANKRD30A Missense_Mutation p.H1283D 0.14 tolerated(1) possibly_damaging(0.507) TCGA-63-A5MR-01 10 43693608 43693608 G C RASGEF1A Nonsense_Mutation p.Y356* 0.19 TCGA-63-A5MR-01 10 43693614 43693614 G A RASGEF1A Silent p.C354C 0.18 TCGA-63-A5MR-01 10 69961677 69961677 G A MYPN Silent p.V1195V 0.17 TCGA-63-A5MR-01 10 81111308 81111308 C T PPIF Silent p.D127D 0.18 TCGA-63-A5MR-01 10 89720726 89720726 G T PTEN Nonsense_Mutation p.G293* 0.47 TCGA-63-A5MR-01 11 1094809 1094809 A T MUC2 Missense_Mutation p.Y1966F 0.19 unknown(0) TCGA-63-A5MR-01 11 114569009 114569009 G T NXPE2 Missense_Mutation p.R125S 0.13 tolerated(0.52) benign(0.088) TCGA-63-A5MR-01 11 116619096 116619096 C A BUD13 3'UTR 0.29 TCGA-63-A5MR-01 11 122775141 122775141 C T C11orf63 Missense_Mutation p.H285Y 0.25 tolerated(0.1) benign(0.011) TCGA-63-A5MR-01 11 18159312 18159312 G C MRGPRX3 Missense_Mutation p.C188S 0.24 tolerated(0.11) benign(0.017) TCGA-63-A5MR-01 11 30033689 30033689 C A KCNA4 Silent p.V179V 0.19 TCGA-63-A5MR-01 11 32460535 32460535 G C WT1 5'Flank 0.12 TCGA-63-A5MR-01 11 33628365 33628365 C T KIAA1549L Silent p.G1389G 0.24 TCGA-63-A5MR-01 11 36520119 36520119 G A TRAF6 Missense_Mutation p.A123V 0.34 deleterious(0) benign(0.171) TCGA-63-A5MR-01 11 4592826 4592826 A G C11orf40 Missense_Mutation p.C161R 0.20 deleterious_low_confidence(0) possibly_damaging(0.588) TCGA-63-A5MR-01 11 55735063 55735063 T A OR10AG1 Nonsense_Mutation p.R293* 0.13 TCGA-63-A5MR-01 11 5686159 5686159 G A TRIM5 Silent p.I454I 0.22 TCGA-63-A5MR-01 11 62299288 62299288 C A AHNAK Missense_Mutation p.E867D 0.31 benign(0.008) TCGA-63-A5MR-01 11 62343498 62343501 TCTG - TUT1 Frame_Shift_Del p.Q602Tfs*71 0.31 TCGA-63-A5MR-01 11 66384128 66384128 G T RBM14-RBM4 5'UTR 0.19 TCGA-63-A5MR-01 11 7064713 7064713 T A NLRP14 Missense_Mutation p.F486I 0.18 deleterious(0.01) benign(0.086) TCGA-63-A5MR-01 11 77832120 77832120 T A ALG8 Missense_Mutation p.I157F 0.28 deleterious(0) benign(0.053) TCGA-63-A5MR-01 11 85609991 85609991 A G CCDC83 Missense_Mutation p.N202S 0.08 deleterious(0.02) possibly_damaging(0.834) TCGA-63-A5MR-01 11 89768669 89768669 G C TRIM49C Missense_Mutation p.R97T 0.10 deleterious(0.02) possibly_damaging(0.821) TCGA-63-A5MR-01 12 103288561 103288561 T C PAH Missense_Mutation p.I102V 0.09 tolerated(1) benign(0) TCGA-63-A5MR-01 12 109660327 109660327 C T ACACB Missense_Mutation p.P1194S 0.21 tolerated(0.88) benign(0.014) TCGA-63-A5MR-01 12 117685180 117685180 G C NOS1 Missense_Mutation p.F966L 0.40 deleterious(0) probably_damaging(0.999) TCGA-63-A5MR-01 12 40499161 40499161 G A SLC2A13 Silent p.A150A 0.53 TCGA-63-A5MR-01 12 49434627 49434627 G C KMT2D Nonsense_Mutation p.S2309* 0.11 TCGA-63-A5MR-01 12 56194667 56194667 C A SARNP Nonsense_Mutation p.E52* 0.09 TCGA-63-A5MR-01 12 56995431 56995431 T C BAZ2A Missense_Mutation p.I1326V 0.42 deleterious(0.01) benign(0) TCGA-63-A5MR-01 12 6747541 6747541 C A ACRBP Missense_Mutation p.E513D 0.12 deleterious(0.01) probably_damaging(0.978) TCGA-63-A5MR-01 12 91502560 91502560 G A LUM Missense_Mutation p.P66L 0.29 deleterious(0.01) benign(0.063) TCGA-63-A5MR-01 13 103443710 103443710 G C KDELC1 Nonsense_Mutation p.S248* 0.28 TCGA-63-A5MR-01 13 58299074 58299074 G T PCDH17 Silent p.A1042A 0.31 TCGA-63-A5MR-01 14 102495897 102495897 C T DYNC1H1 Nonsense_Mutation p.R3164* 0.11 TCGA-63-A5MR-01 14 102904376 102904376 G - TECPR2 Frame_Shift_Del p.G805Afs*95 0.19 TCGA-63-A5MR-01 14 103596086 103596086 C T TNFAIP2 Silent p.I290I 0.15 TCGA-63-A5MR-01 14 20344482 20344482 A T OR4K2 Missense_Mutation p.N19I 0.09 deleterious(0.01) benign(0.163) TCGA-63-A5MR-01 14 28733835 28733835 A G BNIP3P1 RNA 0.25 TCGA-63-A5MR-01 14 39736686 39736686 C T CTAGE5 Missense_Mutation p.P8L 0.21 tolerated(0.15) benign(0.014) TCGA-63-A5MR-01 14 52978110 52978110 T C TXNDC16 Splice_Site p.X202_splice 0.12 TCGA-63-A5MR-01 15 25326330 25326330 G T SNORD116-12 3'Flank 0.24 TCGA-63-A5MR-01 15 25444661 25444661 G T SNORD115-16 RNA 0.24 TCGA-63-A5MR-01 15 40468677 40468677 G A BUB1B Splice_Site p.X129_splice 0.14 TCGA-63-A5MR-01 15 43641157 43641157 G A ADAL Missense_Mutation p.R202K 0.11 deleterious(0) probably_damaging(1) TCGA-63-A5MR-01 15 56208232 56208232 T A NEDD4 Missense_Mutation p.L266F 0.31 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-63-A5MR-01 15 72141190 72141190 G C MYO9A Nonsense_Mutation p.S2278* 0.09 TCGA-63-A5MR-01 16 16244438 16244438 G T ABCC6 Missense_Mutation p.A1467D 0.43 tolerated(0.4) benign(0) TCGA-63-A5MR-01 16 20329560 20329560 G A GP2 Silent p.A403A 0.23 TCGA-63-A5MR-01 16 31088240 31088240 C T ZNF646 Missense_Mutation p.L199F 0.12 deleterious(0.04) probably_damaging(0.994) TCGA-63-A5MR-01 16 58620497 58620529 CAAAGGCTCCCTTCTGCCCAAAGAGGAGATGGG - CNOT1 Nonsense_Mutation p.S186_G197delins* 0.23 TCGA-63-A5MR-01 16 72831159 72831159 G A ZFHX3 Nonsense_Mutation p.Q1808* 0.09 TCGA-63-A5MR-01 16 84256380 84256380 C T KCNG4 Missense_Mutation p.V335I 0.22 tolerated(0.14) benign(0.168) TCGA-63-A5MR-01 17 18023683 18023683 C T MYO15A Silent p.S523S 0.14 TCGA-63-A5MR-01 17 29553477 29553478 - C NF1 Frame_Shift_Ins p.I679Dfs*21 0.35 TCGA-63-A5MR-01 17 44408324 44408324 G A LRRC37A Silent p.A1227A 0.16 TCGA-63-A5MR-01 17 7579585 7579585 G - TP53 Frame_Shift_Del p.L35Cfs*9 0.29 TCGA-63-A5MR-01 17 79982595 79982595 C T LRRC45 Silent p.A103A 0.38 TCGA-63-A5MR-01 17 80043174 80043174 C T FASN Silent p.Q1409Q 0.44 TCGA-63-A5MR-01 18 28919811 28919811 A G DSG1 Missense_Mutation p.T504A 0.33 tolerated(0.83) benign(0.001) TCGA-63-A5MR-01 18 33716300 33716300 C G ELP2 Missense_Mutation p.S83C 0.26 deleterious(0) probably_damaging(0.981) TCGA-63-A5MR-01 18 7036025 7036025 T A LAMA1 Silent p.V600V 0.12 TCGA-63-A5MR-01 19 11978645 11978645 C T ZNF439 Missense_Mutation p.S254F 0.19 tolerated(0.67) benign(0.006) TCGA-63-A5MR-01 19 12501152 12501152 G A ZNF799 3'UTR 0.24 TCGA-63-A5MR-01 19 1466491 1466491 C T APC2 Missense_Mutation p.P1064L 0.15 probably_damaging(0.92) TCGA-63-A5MR-01 19 2272983 2272983 G A OAZ1 Missense_Mutation p.R188Q 0.21 deleterious(0) probably_damaging(0.994) TCGA-63-A5MR-01 19 39805800 39805800 C A LRFN1 Silent p.V59V 0.17 TCGA-63-A5MR-01 19 39962283 39962283 C T SUPT5H Silent p.F621F 0.11 TCGA-63-A5MR-01 19 40978526 40978526 C T SPTBN4 5'UTR 0.18 TCGA-63-A5MR-01 19 44537053 44537053 G T ZNF222 Missense_Mutation p.R449L 0.13 tolerated(0.07) benign(0.23) TCGA-63-A5MR-01 19 45396183 45396183 A G TOMM40 Silent p.T144T 0.23 TCGA-63-A5MR-01 19 45856356 45856356 C T ERCC2 Missense_Mutation p.E606K 0.14 deleterious(0) probably_damaging(0.994) TCGA-63-A5MR-01 19 48994418 48994418 G A LMTK3 Missense_Mutation p.P1467L 0.10 unknown(0) TCGA-63-A5MR-01 19 51830413 51830413 G T IGLON5 Silent p.A242A 0.11 TCGA-63-A5MR-01 19 54209557 54209557 G C MIR526A1 RNA 0.25 TCGA-63-A5MR-01 19 55145425 55145425 G T LILRB1 Missense_Mutation p.G439V 0.40 tolerated(0.07) benign(0.07) TCGA-63-A5MR-01 19 58084314 58084314 G A ZNF416 Missense_Mutation p.H320Y 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-63-A5MR-01 19 58441866 58441866 G C ZNF418 Silent p.L21L 0.14 TCGA-63-A5MR-01 1 103540229 103540229 T A COL11A1 Missense_Mutation p.D199V 0.26 probably_damaging(0.999) TCGA-63-A5MR-01 1 108703872 108703872 T C SLC25A24 Missense_Mutation p.R148G 0.10 deleterious(0) probably_damaging(0.952) TCGA-63-A5MR-01 1 12071646 12071646 G T MFN2 3'UTR 0.09 TCGA-63-A5MR-01 1 143744198 143744198 C T RP6-206I17.1 Intron 0.16 TCGA-63-A5MR-01 1 151678313 151678313 G C CELF3 Missense_Mutation p.Q419E 0.37 deleterious(0.01) probably_damaging(0.994) TCGA-63-A5MR-01 1 151680274 151680274 G T CELF3 Silent p.T208T 0.18 TCGA-63-A5MR-01 1 155583026 155583026 T G MSTO1 Splice_Site p.X428_splice 0.14 TCGA-63-A5MR-01 1 156108503 156108503 G T LMNA Silent p.L641L 0.15 TCGA-63-A5MR-01 1 158687142 158687142 G A OR6K3 Missense_Mutation p.S255L 0.25 tolerated(0.62) benign(0.209) TCGA-63-A5MR-01 1 160466133 160466133 G T SLAMF6 Missense_Mutation p.L34M 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-63-A5MR-01 1 161967626 161967626 C A OLFML2B Missense_Mutation p.R488L 0.28 deleterious(0) benign(0.17) TCGA-63-A5MR-01 1 165380189 165380189 G C RXRG Missense_Mutation p.N260K 0.12 tolerated(0.22) benign(0.042) TCGA-63-A5MR-01 1 171535377 171535377 G A PRRC2C Silent p.A2039A 0.14 TCGA-63-A5MR-01 1 179783193 179783193 G C FAM163A Missense_Mutation p.A125P 0.29 tolerated(0.29) benign(0.33) TCGA-63-A5MR-01 1 181686311 181686311 C T CACNA1E Silent p.R466R 0.12 TCGA-63-A5MR-01 1 182787686 182787686 G T NPL Missense_Mutation p.E156D 0.11 tolerated(0.1) probably_damaging(0.911) TCGA-63-A5MR-01 1 182787687 182787687 G T NPL Nonsense_Mutation p.E157* 0.11 TCGA-63-A5MR-01 1 216243611 216243611 A T USH2A Missense_Mutation p.S1961T 0.19 benign(0.074) TCGA-63-A5MR-01 1 216243612 216243612 G A USH2A Silent p.P1960P 0.20 TCGA-63-A5MR-01 1 216243613 216243613 G T USH2A Missense_Mutation p.P1960H 0.20 probably_damaging(1) TCGA-63-A5MR-01 1 234444870 234444870 A T SLC35F3 Missense_Mutation p.D211V 0.17 deleterious(0) probably_damaging(0.943) TCGA-63-A5MR-01 1 237823333 237823333 G T RYR2 Missense_Mutation p.V2753F 0.23 possibly_damaging(0.74) TCGA-63-A5MR-01 1 241958586 241958586 C A WDR64 Nonsense_Mutation p.Y1015* 0.20 TCGA-63-A5MR-01 1 248512862 248512862 G A OR14C36 Silent p.A262A 0.11 TCGA-63-A5MR-01 1 26387759 26387759 G T TRIM63 Nonsense_Mutation p.Y133* 0.15 TCGA-63-A5MR-01 1 28280952 28280952 C G SMPDL3B Missense_Mutation p.A202G 0.15 tolerated(0.33) benign(0.009) TCGA-63-A5MR-01 1 31744308 31744308 C T SNRNP40 Missense_Mutation p.M231I 0.11 tolerated(0.05) benign(0.285) TCGA-63-A5MR-01 1 40562886 40562886 G A PPT1 Missense_Mutation p.L9F 0.21 tolerated(0.17) benign(0.002) TCGA-63-A5MR-01 1 53699292 53699292 C T MAGOH Silent p.L60L 0.04 TCGA-63-A5MR-01 1 68948336 68948336 T A DEPDC1 Missense_Mutation p.L385F 0.21 tolerated(0.27) benign(0.006) TCGA-63-A5MR-01 1 75065439 75065439 C A C1orf173 Missense_Mutation p.D556Y 0.15 deleterious(0) probably_damaging(0.986) TCGA-63-A5MR-01 1 93101851 93101851 G C EVI5 Missense_Mutation p.L463V 0.11 tolerated(0.18) probably_damaging(0.934) TCGA-63-A5MR-01 20 13714481 13714481 C G ESF1 Missense_Mutation p.E613Q 0.12 deleterious(0) probably_damaging(0.994) TCGA-63-A5MR-01 20 2375244 2375244 G A TGM6 Missense_Mutation p.E52K 0.30 deleterious(0.04) possibly_damaging(0.61) TCGA-63-A5MR-01 20 2380963 2380963 T A TGM6 Missense_Mutation p.L288M 0.15 deleterious(0) probably_damaging(1) TCGA-63-A5MR-01 20 33872306 33872306 C A EIF6 Intron 0.30 TCGA-63-A5MR-01 20 35884861 35884861 G A GHRH Missense_Mutation p.R42W 0.34 deleterious(0) probably_damaging(1) TCGA-63-A5MR-01 20 40034028 40034028 C A CHD6 Silent p.L2451L 0.10 TCGA-63-A5MR-01 20 44596175 44596175 C T ZNF335 Missense_Mutation p.D305N 0.19 deleterious(0) benign(0.262) TCGA-63-A5MR-01 20 5923149 5923149 G A TRMT6 Silent p.D317D 0.24 TCGA-63-A5MR-01 20 6032860 6032860 C T LRRN4 Missense_Mutation p.A196T 0.23 tolerated(0.26) benign(0.014) TCGA-63-A5MR-01 22 24040406 24040406 G C RGL4 Missense_Mutation p.R423P 0.14 deleterious(0) probably_damaging(0.958) TCGA-63-A5MR-01 22 42605732 42605732 G C TCF20 Silent p.L1860L 0.11 TCGA-63-A5MR-01 2 112945128 112945128 C T FBLN7 3'UTR 0.26 TCGA-63-A5MR-01 2 128389958 128389958 G T MYO7B Missense_Mutation p.R1770L 0.18 deleterious(0) possibly_damaging(0.823) TCGA-63-A5MR-01 2 176982108 176982108 C T HOXD10 Missense_Mutation p.R183C 0.33 deleterious(0.01) possibly_damaging(0.739) TCGA-63-A5MR-01 2 19553275 19553275 G C OSR1 Missense_Mutation p.P98A 0.27 tolerated(0.11) benign(0.071) TCGA-63-A5MR-01 2 202172322 202172322 C G ALS2CR12 Missense_Mutation p.E267Q 0.32 tolerated(0.07) probably_damaging(0.999) TCGA-63-A5MR-01 2 242814234 242814234 G A CXXC11 Nonsense_Mutation p.W176* 0.43 TCGA-63-A5MR-01 2 31572640 31572640 C G XDH Missense_Mutation p.E961Q 0.20 tolerated(0.1) possibly_damaging(0.821) TCGA-63-A5MR-01 2 42511830 42511830 A C EML4 Missense_Mutation p.D333A 0.21 deleterious(0) probably_damaging(0.976) TCGA-63-A5MR-01 2 48808641 48808641 C G STON1-GTF2A1L Missense_Mutation p.S290C 0.08 deleterious(0) probably_damaging(0.998) TCGA-63-A5MR-01 2 69093132 69093132 C T BMP10 Missense_Mutation p.M302I 0.16 tolerated(0.21) benign(0.04) TCGA-63-A5MR-01 2 70890630 70890630 G C ADD2 Nonsense_Mutation p.S703* 0.07 TCGA-63-A5MR-01 2 88484879 88484879 G T THNSL2 Silent p.S370S 0.18 TCGA-63-A5MR-01 3 102189291 102189291 C T ZPLD1 Silent p.P345P 0.26 TCGA-63-A5MR-01 3 108723699 108723699 C T MORC1 Missense_Mutation p.A684T 0.29 tolerated_low_confidence(0.58) benign(0.001) TCGA-63-A5MR-01 3 121412701 121412701 C T GOLGB1 Silent p.A2223A 0.08 TCGA-63-A5MR-01 3 122632727 122632727 C A SEMA5B Missense_Mutation p.V758L 0.22 tolerated(0.06) probably_damaging(0.999) TCGA-63-A5MR-01 3 130162343 130162343 C A COL6A5 Missense_Mutation p.P2171T 0.27 tolerated(0.51) benign(0.193) TCGA-63-A5MR-01 3 138665213 138665213 C T FOXL2 Missense_Mutation p.E118K 0.10 deleterious(0) possibly_damaging(0.874) TCGA-63-A5MR-01 3 140866079 140866079 C T SPSB4 Nonsense_Mutation p.Q264* 0.06 TCGA-63-A5MR-01 3 146311926 146311926 C T PLSCR5 Missense_Mutation p.M78I 0.25 tolerated(0.27) benign(0.047) TCGA-63-A5MR-01 3 154027565 154027565 A C DHX36 Silent p.G230G 0.23 TCGA-63-A5MR-01 3 186272376 186272376 C T TBCCD1 Missense_Mutation p.R404H 0.16 tolerated(0.05) benign(0.047) TCGA-63-A5MR-01 3 186460102 186460102 C T KNG1 Silent p.L639L 0.08 TCGA-63-A5MR-01 3 195453100 195453100 T G MUC20 Missense_Mutation p.S542R 0.21 deleterious(0.04) unknown(0) TCGA-63-A5MR-01 3 50331060 50331060 C T HYAL3 Intron 0.27 TCGA-63-A5MR-01 3 57994497 57994497 G T FLNB Missense_Mutation p.R69L 0.24 deleterious(0) benign(0.346) TCGA-63-A5MR-01 3 98251563 98251563 C T GPR15 Missense_Mutation p.S229L 0.08 deleterious(0.02) possibly_damaging(0.486) TCGA-63-A5MR-01 4 120214245 120214245 C T USP53 Missense_Mutation p.S1034L 0.10 deleterious_low_confidence(0.04) possibly_damaging(0.548) TCGA-63-A5MR-01 4 166388935 166388935 G A CPE Silent p.V200V 0.20 TCGA-63-A5MR-01 4 169337838 169337838 G A DDX60L Silent p.L907L 0.32 TCGA-63-A5MR-01 4 17816591 17816591 G C NCAPG Silent p.V220V 0.29 TCGA-63-A5MR-01 4 186320742 186320742 G A ANKRD37 Silent p.G97G 0.06 TCGA-63-A5MR-01 4 46314710 46314710 A T GABRA2 Missense_Mutation p.F93L 0.28 deleterious(0.03) possibly_damaging(0.766) TCGA-63-A5MR-01 4 6043889 6043889 C G JAKMIP1 Missense_Mutation p.E698D 0.06 tolerated(0.14) benign(0.023) TCGA-63-A5MR-01 4 62599070 62599070 C A LPHN3 Missense_Mutation p.D331E 0.24 tolerated(0.63) possibly_damaging(0.895) TCGA-63-A5MR-01 4 69215450 69215450 C T YTHDC1 Missense_Mutation p.E8K 0.04 deleterious_low_confidence(0.03) unknown(0) TCGA-63-A5MR-01 4 71099761 71099761 T A FDCSP Missense_Mutation p.S39T 0.33 tolerated_low_confidence(0.31) benign(0.294) TCGA-63-A5MR-01 4 90647751 90647751 C A SNCA 3'UTR 0.20 TCGA-63-A5MR-01 5 126781159 126781159 C T MEGF10 Silent p.I834I 0.26 TCGA-63-A5MR-01 5 137206228 137206228 C G MYOT 5'UTR 0.32 TCGA-63-A5MR-01 5 140208977 140208977 C A PCDHA6 Nonsense_Mutation p.S434* 0.05 TCGA-63-A5MR-01 5 140222207 140222207 C A PCDHA8 Nonsense_Mutation p.S434* 0.25 TCGA-63-A5MR-01 5 140236301 140236301 G C PCDHA10 Missense_Mutation p.G223A 0.14 deleterious_low_confidence(0.01) benign(0.356) TCGA-63-A5MR-01 5 33577236 33577236 C G ADAMTS12 Silent p.R965R 0.28 TCGA-63-A5MR-01 5 35876418 35876418 C A IL7R Missense_Mutation p.L404I 0.20 tolerated(0.13) possibly_damaging(0.904) TCGA-63-A5MR-01 5 41382448 41382448 G A PLCXD3 Nonsense_Mutation p.R98* 0.15 TCGA-63-A5MR-01 5 44809028 44809028 C A MRPS30 5'UTR 0.27 TCGA-63-A5MR-01 5 53815224 53815224 A G SNX18 Missense_Mutation p.D481G 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-63-A5MR-01 5 633984 633984 G A CEP72 Missense_Mutation p.E205K 0.04 deleterious(0.01) probably_damaging(0.993) TCGA-63-A5MR-01 5 75427589 75427589 A G SV2C Missense_Mutation p.Y5C 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.471) TCGA-63-A5MR-01 5 89949548 89949548 A T GPR98 Missense_Mutation p.K1386I 0.33 probably_damaging(0.973) TCGA-63-A5MR-01 5 96124287 96124287 T C ERAP1 Silent p.V542V 0.09 TCGA-63-A5MR-01 6 105406018 105406018 G A LIN28B Missense_Mutation p.E19K 0.30 deleterious(0.03) unknown(0) TCGA-63-A5MR-01 6 105406027 105406027 G A LIN28B Missense_Mutation p.E22K 0.31 tolerated(0.06) unknown(0) TCGA-63-A5MR-01 6 109762592 109762592 A G SMPD2 Missense_Mutation p.D28G 0.30 tolerated(0.07) benign(0.158) TCGA-63-A5MR-01 6 27419394 27419394 T C ZNF184 Silent p.E648E 0.32 TCGA-63-A5MR-01 6 30569794 30569794 G A PPP1R10 Missense_Mutation p.H878Y 0.10 deleterious_low_confidence(0.02) unknown(0) TCGA-63-A5MR-01 6 30893361 30893361 C T VARS2 Silent p.F972F 0.34 TCGA-63-A5MR-01 6 31323165 31323165 G TA HLA-B Frame_Shift_Ins p.S275Lfs*14 0.17 TCGA-63-A5MR-01 7 102669849 102669849 A G FBXL13 Missense_Mutation p.M6T 0.26 deleterious(0.04) benign(0.103) TCGA-63-A5MR-01 7 142162335 142162335 G C TRBV6-6 Missense_Mutation p.A10G 0.16 tolerated(0.06) benign(0.093) TCGA-63-A5MR-01 7 142723491 142723491 A G OR9A2 Silent p.C243C 0.33 TCGA-63-A5MR-01 7 149419935 149419935 G C KRBA1 Silent p.V220V 0.26 TCGA-63-A5MR-01 7 155094081 155094081 C G INSIG1 Missense_Mutation p.L220V 0.26 tolerated(0.36) benign(0.128) TCGA-63-A5MR-01 7 16650380 16650380 C G ANKMY2 Missense_Mutation p.M180I 0.16 tolerated(0.11) benign(0.016) TCGA-63-A5MR-01 7 29438008 29438008 C T CHN2 Missense_Mutation p.R66W 0.13 deleterious(0) probably_damaging(0.998) TCGA-63-A5MR-01 7 35733816 35733816 G C HERPUD2 Missense_Mutation p.S42C 0.17 deleterious(0) probably_damaging(0.988) TCGA-63-A5MR-01 7 87150122 87150122 A C ABCB1 Missense_Mutation p.M919R 0.14 tolerated(0.19) benign(0.003) TCGA-63-A5MR-01 7 93106929 93106929 G T CALCR Missense_Mutation p.P104Q 0.33 tolerated(0.05) probably_damaging(1) TCGA-63-A5MR-01 8 101563796 101563797 - A ANKRD46 Intron 0.33 TCGA-63-A5MR-01 8 121432179 121432179 C T MRPL13 Splice_Site p.X103_splice 0.17 TCGA-63-A5MR-01 8 125463784 125463784 A G TRMT12 Missense_Mutation p.I206V 0.28 deleterious(0.03) possibly_damaging(0.805) TCGA-63-A5MR-01 8 130864497 130864497 C G FAM49B Missense_Mutation p.E182Q 0.21 deleterious(0.01) possibly_damaging(0.853) TCGA-63-A5MR-01 8 134072463 134072463 G C SLA Silent p.V21V 0.24 TCGA-63-A5MR-01 8 135602598 135602598 C A ZFAT Missense_Mutation p.D826Y 0.26 deleterious(0) probably_damaging(0.924) TCGA-63-A5MR-01 8 140630755 140630755 G C KCNK9 Missense_Mutation p.P291A 0.14 tolerated(0.85) benign(0) TCGA-63-A5MR-01 8 142176444 142176444 C T DENND3 Missense_Mutation p.S490L 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-63-A5MR-01 8 145742139 145742139 C T RECQL4 Missense_Mutation p.A122T 0.21 tolerated(0.35) benign(0.023) TCGA-63-A5MR-01 8 1791576 1791576 G A ARHGEF10 Missense_Mutation p.R4Q 0.21 tolerated_low_confidence(0.59) benign(0.001) TCGA-63-A5MR-01 8 53569448 53569448 G A RB1CC1 Nonsense_Mutation p.Q981* 0.27 TCGA-63-A5MR-01 8 57079802 57079802 T A PLAG1 Missense_Mutation p.H168L 0.28 deleterious(0) probably_damaging(0.954) TCGA-63-A5MR-01 8 61754241 61754241 C T CHD7 Silent p.S1524S 0.23 TCGA-63-A5MR-01 8 9605615 9605615 G A TNKS Missense_Mutation p.E909K 0.17 deleterious(0.04) probably_damaging(1) TCGA-63-A5MR-01 9 137004917 137004917 C T WDR5 Intron 0.38 TCGA-63-A5MR-01 9 139412390 139412390 C T NOTCH1 Splice_Site p.X419_splice 0.42 TCGA-63-A5MR-01 9 140777242 140777242 G T CACNA1B Missense_Mutation p.G146V 0.16 tolerated(0.25) possibly_damaging(0.667) TCGA-63-A5MR-01 9 84608272 84608272 T A SPATA31D1 Missense_Mutation p.S963T 0.43 tolerated(0.45) benign(0.261) TCGA-63-A5MR-01 X 109695697 109695697 C G RGAG1 Missense_Mutation p.L618V 0.13 tolerated(0.06) possibly_damaging(0.848) TCGA-63-A5MR-01 X 117788746 117788746 C T DOCK11 Missense_Mutation p.A1626V 0.09 deleterious(0) probably_damaging(0.91) TCGA-63-A5MR-01 X 118726400 118726400 G A NKRF Silent p.L36L 0.15 TCGA-63-A5MR-01 X 128886259 128886259 G A XPNPEP2 Missense_Mutation p.D319N 0.12 tolerated(0.67) benign(0.003) TCGA-63-A5MR-01 X 134991810 134991810 C A SAGE1 Missense_Mutation p.T532N 0.15 tolerated(0.12) probably_damaging(0.978) TCGA-63-A5MR-01 X 150909269 150909269 G C CNGA2 Missense_Mutation p.K126N 0.06 tolerated(0.09) benign(0.02) TCGA-63-A5MR-01 X 151899762 151899762 C A MAGEA12 3'UTR 0.10 TCGA-63-A5MR-01 X 153761861 153761861 A T G6PD Missense_Mutation p.L295Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-63-A5MR-01 X 16838357 16838357 C T TXLNG Silent p.L159L 0.12 TCGA-63-A5MR-01 X 22292082 22292082 G T ZNF645 Missense_Mutation p.G325V 0.22 deleterious(0.01) benign(0.422) TCGA-63-A5MR-01 X 32380951 32380951 A G DMD Missense_Mutation p.L1760P 0.16 possibly_damaging(0.883) TCGA-63-A5MR-01 X 37984564 37984564 G A SYTL5 Missense_Mutation p.D641N 0.11 deleterious(0.03) probably_damaging(0.969) TCGA-63-A5MR-01 X 41587148 41587149 - A GPR82 Frame_Shift_Ins p.N292Kfs*12 0.13 TCGA-63-A5MR-01 X 48341069 48341069 A G FTSJ1 Missense_Mutation p.R282G 0.22 deleterious(0.01) benign(0.107) TCGA-63-A5MR-01 X 54964135 54964135 C T PFKFB1 Missense_Mutation p.R374H 0.17 probably_damaging(0.958) TCGA-63-A5MR-01 X 64959000 64959000 G A MSN Missense_Mutation p.E505K 0.20 deleterious(0.03) probably_damaging(0.986) TCGA-63-A5MR-01 X 70339629 70339629 G T MED12 Missense_Mutation p.D100Y 0.09 possibly_damaging(0.674) TCGA-63-A5MR-01 X 70389378 70389378 C A NLGN3 Missense_Mutation p.R660S 0.14 tolerated(0.13) benign(0.006) TCGA-63-A5MR-01 X 71350986 71350986 C T RGAG4 Silent p.A135A 0.21 TCGA-63-A5MR-01 X 77912563 77912563 C A ZCCHC5 Missense_Mutation p.G452V 0.10 deleterious(0) probably_damaging(0.923) TCGA-63-A5MR-01 X 77912564 77912564 C G ZCCHC5 Missense_Mutation p.G452R 0.10 deleterious(0) probably_damaging(0.923) TCGA-63-A5MR-01 X 79932121 79932121 C T BRWD3 Missense_Mutation p.G1799E 0.20 deleterious_low_confidence(0) unknown(0) TCGA-63-A5MS-01 10 100219335 100219335 C G HPSE2 Missense_Mutation p.R592P 0.10 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-63-A5MS-01 10 101715650 101715650 C G DNMBP Silent p.P527P 0.06 TCGA-63-A5MS-01 10 102684400 102684400 G C FAM178A Missense_Mutation p.E548Q 0.04 tolerated(0.17) probably_damaging(0.999) TCGA-63-A5MS-01 10 102684604 102684604 G T FAM178A Nonsense_Mutation p.E616* 0.08 TCGA-63-A5MS-01 10 102749629 102749629 A T C10orf2 Missense_Mutation p.Q491L 0.04 deleterious(0) possibly_damaging(0.464) TCGA-63-A5MS-01 10 124339222 124339222 G A DMBT1 Missense_Mutation p.V270M 0.05 deleterious(0.03) probably_damaging(1) TCGA-63-A5MS-01 10 124907947 124907947 C G HMX2 Missense_Mutation p.S18C 0.05 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-63-A5MS-01 10 129905419 129905419 A G MKI67 Missense_Mutation p.L1562P 0.07 tolerated(0.07) probably_damaging(0.999) TCGA-63-A5MS-01 10 129907449 129907449 C G MKI67 Missense_Mutation p.Q885H 0.12 deleterious(0.05) probably_damaging(0.936) TCGA-63-A5MS-01 10 13246248 13246248 G C MCM10 Missense_Mutation p.E795D 0.09 tolerated(0.78) benign(0.009) TCGA-63-A5MS-01 10 134145202 134145202 C A LRRC27 5'Flank 0.21 TCGA-63-A5MS-01 10 26310481 26310481 A T MYO3A Missense_Mutation p.D212V 0.20 deleterious(0) probably_damaging(1) TCGA-63-A5MS-01 10 50943369 50943369 G C OGDHL Missense_Mutation p.P980A 0.11 tolerated(0.3) benign(0.077) TCGA-63-A5MS-01 10 61011437 61011437 C A FAM13C Splice_Site p.X511_splice 0.28 TCGA-63-A5MS-01 10 64967891 64967891 T C JMJD1C Missense_Mutation p.R1180G 0.07 tolerated(0.11) benign(0.003) TCGA-63-A5MS-01 10 6521040 6521040 C G PRKCQ Missense_Mutation p.E423Q 0.25 deleterious(0) probably_damaging(0.973) TCGA-63-A5MS-01 10 75214220 75214220 C G PPP3CB Missense_Mutation p.S379T 0.11 deleterious(0) benign(0.071) TCGA-63-A5MS-01 10 79616507 79616507 C A DLG5 Missense_Mutation p.G173C 0.11 deleterious(0) probably_damaging(0.938) TCGA-63-A5MS-01 10 82269104 82269104 C T TSPAN14 Silent p.A109A 0.16 TCGA-63-A5MS-01 10 88441247 88441247 G C LDB3 Missense_Mutation p.A126P 0.16 tolerated(0.33) benign(0.001) TCGA-63-A5MS-01 10 96466669 96466669 G C CYP2C18 Missense_Mutation p.M257I 0.07 tolerated(0.47) benign(0) TCGA-63-A5MS-01 10 99349910 99349910 G T C10orf62 Missense_Mutation p.G86C 0.08 deleterious(0) probably_damaging(0.996) TCGA-63-A5MS-01 11 119005245 119005245 G T HINFP 3'UTR 0.21 TCGA-63-A5MS-01 11 120776025 120776025 G T GRIK4 Silent p.G433G 0.12 TCGA-63-A5MS-01 11 1217250 1217250 G A MUC5AC RNA 0.08 TCGA-63-A5MS-01 11 123894517 123894517 C A OR10G9 Silent p.V266V 0.09 TCGA-63-A5MS-01 11 124766510 124766510 G T ROBO4 Missense_Mutation p.Q153K 0.12 tolerated(0.1) possibly_damaging(0.472) TCGA-63-A5MS-01 11 134055342 134055342 G T NCAPD3 Missense_Mutation p.H709N 0.13 deleterious(0) benign(0.41) TCGA-63-A5MS-01 11 14666517 14666517 C G PDE3B Missense_Mutation p.S299W 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-63-A5MS-01 11 18159532 18159532 C A MRGPRX3 Silent p.S261S 0.21 TCGA-63-A5MS-01 11 20177944 20177944 C A DBX1 Missense_Mutation p.G322V 0.35 deleterious(0.04) benign(0.311) TCGA-63-A5MS-01 11 21250944 21250944 A T NELL1 Missense_Mutation p.Q498L 0.14 deleterious(0.03) benign(0.001) TCGA-63-A5MS-01 11 43284030 43284030 C T HNRNPKP3 RNA 0.23 TCGA-63-A5MS-01 11 44286456 44286456 G T ALX4 Missense_Mutation p.A395D 0.11 deleterious(0) probably_damaging(0.998) TCGA-63-A5MS-01 11 48510833 48510833 G A OR4A47 Silent p.G163G 0.12 TCGA-63-A5MS-01 11 49805577 49805577 G T RP11-707M1.1 RNA 0.22 TCGA-63-A5MS-01 11 55136267 55136267 T A OR4A15 Missense_Mutation p.L303Q 0.05 deleterious_low_confidence(0) possibly_damaging(0.543) TCGA-63-A5MS-01 11 55371162 55371162 C A OR4C11 Missense_Mutation p.G230W 0.16 deleterious(0) probably_damaging(0.998) TCGA-63-A5MS-01 11 55433333 55433333 C A OR4C6 Silent p.R231R 0.10 TCGA-63-A5MS-01 11 55890626 55890626 T A OR8H3 Missense_Mutation p.L260I 0.07 deleterious(0.01) possibly_damaging(0.58) TCGA-63-A5MS-01 11 55904716 55904716 G T OR8J3 Nonsense_Mutation p.S160* 0.14 TCGA-63-A5MS-01 11 56020142 56020142 T C OR5T3 Missense_Mutation p.I156T 0.18 deleterious(0.01) probably_damaging(0.979) TCGA-63-A5MS-01 11 56058137 56058137 A T OR8H1 Silent p.I134I 0.11 TCGA-63-A5MS-01 11 56086451 56086451 A T OR8K3 Silent p.V223V 0.12 TCGA-63-A5MS-01 11 56143635 56143635 G T OR8U1 Missense_Mutation p.C179F 0.07 deleterious(0.01) probably_damaging(1) TCGA-63-A5MS-01 11 56757065 56757065 T G OR5AK2 Missense_Mutation p.L226R 0.09 deleterious(0) probably_damaging(0.971) TCGA-63-A5MS-01 11 57077869 57077869 C T TNKS1BP1 Silent p.R772R 0.14 TCGA-63-A5MS-01 11 57193599 57193599 C A SLC43A3 Missense_Mutation p.G16V 0.11 deleterious(0) probably_damaging(0.993) TCGA-63-A5MS-01 11 57947624 57947624 C A OR9Q1 Silent p.T236T 0.09 TCGA-63-A5MS-01 11 59245738 59245738 C T OR4D10 Missense_Mutation p.S279F 0.10 deleterious(0.03) possibly_damaging(0.774) TCGA-63-A5MS-01 11 62494318 62494318 C A HNRNPUL2 Missense_Mutation p.G104V 0.11 tolerated(0.06) probably_damaging(0.953) TCGA-63-A5MS-01 11 64888469 64888469 C G FAU Missense_Mutation p.R87T 0.19 deleterious(0) probably_damaging(0.945) TCGA-63-A5MS-01 11 66282108 66282108 C G BBS1 Missense_Mutation p.P131A 0.09 tolerated(0.22) benign(0.001) TCGA-63-A5MS-01 11 67402358 67402358 G T TBX10 Silent p.I102I 0.17 TCGA-63-A5MS-01 11 67925187 67925187 T C SUV420H1 Missense_Mutation p.R876G 0.23 deleterious(0) probably_damaging(0.999) TCGA-63-A5MS-01 11 7818087 7818087 G T OR5P2 Missense_Mutation p.Q135K 0.11 tolerated(0.25) benign(0.013) TCGA-63-A5MS-01 12 101674964 101674964 G T UTP20 Missense_Mutation p.S39I 0.30 deleterious(0) possibly_damaging(0.739) TCGA-63-A5MS-01 12 102025488 102025488 G C MYBPC1 Missense_Mutation p.R118S 0.16 tolerated(0.14) benign(0.166) TCGA-63-A5MS-01 12 104337002 104337002 G A HSP90B1 Missense_Mutation p.D599N 0.15 tolerated(0.12) benign(0.031) TCGA-63-A5MS-01 12 107103190 107103190 C T RFX4 Nonsense_Mutation p.R315* 0.10 TCGA-63-A5MS-01 12 11138936 11138936 G A TAS2R50 Missense_Mutation p.S175L 0.09 deleterious(0.04) benign(0.168) TCGA-63-A5MS-01 12 11149802 11149802 T A TAS2R20 Missense_Mutation p.I225L 0.36 tolerated(0.07) benign(0.084) TCGA-63-A5MS-01 12 11149818 11149818 G A TAS2R20 Silent p.P219P 0.34 TCGA-63-A5MS-01 12 112650361 112650361 C A HECTD4 Missense_Mutation p.G2374V 0.28 probably_damaging(0.968) TCGA-63-A5MS-01 12 113531419 113531419 C A DTX1 Missense_Mutation p.P360Q 0.27 tolerated(0.07) probably_damaging(0.995) TCGA-63-A5MS-01 12 113745540 113745540 G C SLC8B1 Missense_Mutation p.T456S 0.12 deleterious(0.03) possibly_damaging(0.788) TCGA-63-A5MS-01 12 117365907 117365907 G T FBXW8 Missense_Mutation p.R133M 0.07 tolerated(0.15) benign(0.16) TCGA-63-A5MS-01 12 117664526 117664526 C G NOS1 Silent p.R1256R 0.14 TCGA-63-A5MS-01 12 123270283 123270283 C G CCDC62 Silent p.L138L 0.12 TCGA-63-A5MS-01 12 123490001 123490001 C T PITPNM2 Silent p.E246E 0.16 TCGA-63-A5MS-01 12 15654897 15654897 A T PTPRO Silent p.S335S 0.37 TCGA-63-A5MS-01 12 40012718 40012718 C G ABCD2 Missense_Mutation p.D234H 0.07 deleterious(0) probably_damaging(1) TCGA-63-A5MS-01 12 40687427 40687427 C A LRRK2 Missense_Mutation p.R924S 0.14 deleterious(0.01) benign(0.09) TCGA-63-A5MS-01 12 49428631 49428631 G - KMT2D Frame_Shift_Del p.A3440Vfs*11 0.16 TCGA-63-A5MS-01 12 49460774 49460774 G A RHEBL1 Missense_Mutation p.H57Y 0.08 deleterious(0) possibly_damaging(0.541) TCGA-63-A5MS-01 12 49497487 49497487 T A LMBR1L Missense_Mutation p.N182I 0.20 deleterious(0.01) benign(0.002) TCGA-63-A5MS-01 12 53565230 53565230 C A CSAD Intron 0.11 TCGA-63-A5MS-01 12 53670489 53670489 C G ESPL1 Missense_Mutation p.R596G 0.19 deleterious(0.01) possibly_damaging(0.593) TCGA-63-A5MS-01 12 54686619 54686619 C A NFE2 Nonsense_Mutation p.E221* 0.08 TCGA-63-A5MS-01 12 55715183 55715183 C T OR6C1 Missense_Mutation p.S267F 0.15 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-63-A5MS-01 12 56647082 56647082 C G ANKRD52 Missense_Mutation p.D364H 0.12 deleterious(0) probably_damaging(0.994) TCGA-63-A5MS-01 12 56647166 56647166 C T ANKRD52 Missense_Mutation p.D336N 0.09 deleterious(0.03) probably_damaging(0.957) TCGA-63-A5MS-01 12 57484936 57484936 C G NAB2 Missense_Mutation p.R38G 0.08 deleterious(0) probably_damaging(0.98) TCGA-63-A5MS-01 12 6562704 6562704 C T TAPBPL Silent p.L129L 0.22 TCGA-63-A5MS-01 12 68595645 68595645 A T IL26 Missense_Mutation p.L166I 0.08 deleterious(0.02) benign(0.119) TCGA-63-A5MS-01 12 7177195 7177196 AG - C1S Frame_Shift_Del p.R437Dfs*10 0.10 TCGA-63-A5MS-01 12 72866891 72866891 G C TRHDE Missense_Mutation p.W460C 0.23 deleterious(0) probably_damaging(1) TCGA-63-A5MS-01 12 7843060 7843060 C A GDF3 Missense_Mutation p.R170L 0.33 deleterious(0) benign(0.024) TCGA-63-A5MS-01 12 83250848 83250848 A T TMTC2 Missense_Mutation p.Y48F 0.27 tolerated(0.52) benign(0.002) TCGA-63-A5MS-01 12 9356373 9356373 G A PZP Silent p.V86V 0.25 TCGA-63-A5MS-01 12 97311511 97311511 T C NEDD1 Missense_Mutation p.L122P 0.05 deleterious(0) probably_damaging(0.968) TCGA-63-A5MS-01 13 107164991 107164991 G T EFNB2 Missense_Mutation p.L98I 0.55 deleterious(0) possibly_damaging(0.879) TCGA-63-A5MS-01 13 113699181 113699181 C G MCF2L Intron 0.76 TCGA-63-A5MS-01 13 114290310 114290310 C T TFDP1 Silent p.L236L 0.80 TCGA-63-A5MS-01 13 19751171 19751171 A G TUBA3C Silent p.L318L 0.14 TCGA-63-A5MS-01 13 20224317 20224327 ACGAAACGGAT - MPHOSPH8 Frame_Shift_Del p.E499Lfs*9 0.26 TCGA-63-A5MS-01 13 28834607 28834607 T C PAN3 Silent p.Y424Y 0.19 TCGA-63-A5MS-01 13 45556230 45556230 G A NUFIP1 Missense_Mutation p.P158S 0.25 tolerated(0.09) benign(0.412) TCGA-63-A5MS-01 13 45915258 45915258 T C TPT1 5'UTR 0.46 TCGA-63-A5MS-01 13 52516581 52516581 C A ATP7B Missense_Mutation p.R1118L 0.23 tolerated(0.14) benign(0.005) TCGA-63-A5MS-01 13 73409470 73409470 G T PIBF1 Missense_Mutation p.R396L 0.23 deleterious(0) probably_damaging(0.994) TCGA-63-A5MS-01 14 105185236 105185236 C G INF2 3'UTR 0.21 TCGA-63-A5MS-01 14 106110951 106110951 G C IGHG2 Silent p.S59S 0.17 TCGA-63-A5MS-01 14 106805286 106805286 C T IGHV4-31 Missense_Mutation p.D93N 0.07 deleterious_low_confidence(0.02) benign(0.165) TCGA-63-A5MS-01 14 22102296 22102296 T C OR10G2 Missense_Mutation p.T235A 0.08 tolerated(0.05) possibly_damaging(0.852) TCGA-63-A5MS-01 14 22573858 22573858 G T TRAV24 Silent p.V26V 0.31 TCGA-63-A5MS-01 14 23282183 23282183 T A SLC7A7 Missense_Mutation p.Y142F 0.06 deleterious(0) probably_damaging(1) TCGA-63-A5MS-01 14 23635700 23635700 C G SLC7A8 Missense_Mutation p.E67D 0.09 tolerated(0.36) probably_damaging(0.997) TCGA-63-A5MS-01 14 24109020 24109020 G A DHRS2 Silent p.G112G 0.19 TCGA-63-A5MS-01 14 31191744 31191744 G C SCFD1 Missense_Mutation p.Q605H 0.08 tolerated(0.16) possibly_damaging(0.582) TCGA-63-A5MS-01 14 45369838 45369838 A G C14orf28 Missense_Mutation p.Y67C 0.14 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-63-A5MS-01 14 47504493 47504493 T G MDGA2 Missense_Mutation p.T514P 0.11 deleterious(0.04) possibly_damaging(0.839) TCGA-63-A5MS-01 14 50550573 50550573 G A C14orf183 Silent p.G257G 0.23 TCGA-63-A5MS-01 14 52735055 52735055 G T PTGDR Missense_Mutation p.V175L 0.09 deleterious(0.01) possibly_damaging(0.542) TCGA-63-A5MS-01 14 65008283 65008283 G C HSPA2 Missense_Mutation p.R239P 0.11 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-63-A5MS-01 14 68249969 68249969 G A ZFYVE26 Silent p.L1300L 0.06 TCGA-63-A5MS-01 14 68268944 68268944 G C ZFYVE26 Silent p.L497L 0.17 TCGA-63-A5MS-01 14 70713078 70713078 A T ADAM21P1 RNA 0.08 TCGA-63-A5MS-01 14 72055722 72055722 A T SIPA1L1 Missense_Mutation p.H378L 0.10 tolerated(0.06) probably_damaging(0.911) TCGA-63-A5MS-01 14 94103575 94103575 T C UNC79 Silent p.P1772P 0.19 TCGA-63-A5MS-01 14 94420715 94420716 - A ASB2 Frame_Shift_Ins p.H143Afs*108 0.18 TCGA-63-A5MS-01 14 95108184 95108184 A C SERPINA13P RNA 0.11 TCGA-63-A5MS-01 15 102249014 102249014 G T TARSL2 Silent p.I304I 0.24 TCGA-63-A5MS-01 15 20876538 20876538 G T NBEAP1 RNA 0.11 TCGA-63-A5MS-01 15 25436590 25436590 C G SNORD115-12 RNA 0.06 TCGA-63-A5MS-01 15 26793239 26793239 G A GABRB3 Missense_Mutation p.H375Y 0.06 tolerated(0.2) possibly_damaging(0.867) TCGA-63-A5MS-01 15 38805093 38805093 G C RASGRP1 Missense_Mutation p.S247C 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-63-A5MS-01 15 43827336 43827336 G C PPIP5K1 Missense_Mutation p.Q1280E 0.14 deleterious_low_confidence(0.01) benign(0.008) TCGA-63-A5MS-01 15 55970156 55970156 C T PRTG Missense_Mutation p.R407K 0.11 tolerated(0.63) benign(0.026) TCGA-63-A5MS-01 15 59102505 59102505 G C FAM63B Missense_Mutation p.R347P 0.06 deleterious(0.03) probably_damaging(0.997) TCGA-63-A5MS-01 15 63955324 63955324 C T HERC1 Silent p.A2920A 0.05 TCGA-63-A5MS-01 15 63987027 63987027 G C HERC1 Missense_Mutation p.Q1730E 0.16 possibly_damaging(0.713) TCGA-63-A5MS-01 15 63988473 63988473 G C HERC1 Missense_Mutation p.I1657M 0.18 benign(0) TCGA-63-A5MS-01 15 64717751 64717751 C G TRIP4 Missense_Mutation p.P499R 0.25 deleterious(0) probably_damaging(0.998) TCGA-63-A5MS-01 15 74654447 74654447 C A CYP11A1 Intron 0.10 TCGA-63-A5MS-01 15 84581950 84581950 G A ADAMTSL3 Missense_Mutation p.E603K 0.30 deleterious(0.03) probably_damaging(0.947) TCGA-63-A5MS-01 15 85370754 85370754 G A ALPK3 Silent p.E276E 0.19 TCGA-63-A5MS-01 15 91453848 91453848 C G MAN2A2 Silent p.L565L 0.16 TCGA-63-A5MS-01 15 99672934 99672934 G A SYNM Missense_Mutation p.E1456K 0.04 deleterious(0.02) probably_damaging(0.913) TCGA-63-A5MS-01 16 1271732 1271732 G C TPSG1 3'UTR 0.44 TCGA-63-A5MS-01 16 18820929 18820929 A C SMG1 Missense_Mutation p.L3650V 0.27 deleterious(0) probably_damaging(0.994) TCGA-63-A5MS-01 16 20482464 20482464 T C ACSM2A Silent p.S222S 0.16 TCGA-63-A5MS-01 16 23197900 23197900 A G SCNN1G Missense_Mutation p.N103S 0.21 tolerated(0.57) probably_damaging(0.954) TCGA-63-A5MS-01 16 23706652 23706652 G A ERN2 Silent p.L605L 0.33 TCGA-63-A5MS-01 16 27476664 27476664 C G GTF3C1 Missense_Mutation p.D1758H 0.05 deleterious(0.02) probably_damaging(0.931) TCGA-63-A5MS-01 16 2817189 2817189 C G SRRM2 Silent p.L2220L 0.05 TCGA-63-A5MS-01 16 2817280 2817280 C T SRRM2 Missense_Mutation p.P2251S 0.11 benign(0.298) TCGA-63-A5MS-01 16 3274078 3274078 C G ZNF200 Missense_Mutation p.K334N 0.10 deleterious(0.02) benign(0.178) TCGA-63-A5MS-01 16 50128651 50128651 A G HEATR3 Missense_Mutation p.S516G 0.17 tolerated(0.14) benign(0.043) TCGA-63-A5MS-01 16 50338868 50338868 C T ADCY7 Silent p.D531D 0.11 TCGA-63-A5MS-01 16 51172945 51172945 G A SALL1 Missense_Mutation p.P1063L 0.10 tolerated(0.14) possibly_damaging(0.69) TCGA-63-A5MS-01 16 53279641 53279641 G T CHD9 Silent p.R1111R 0.12 TCGA-63-A5MS-01 16 62055104 62055104 C A CDH8 Missense_Mutation p.M68I 0.21 deleterious(0) benign(0.002) TCGA-63-A5MS-01 16 633364 633364 C T PIGQ Silent p.V671V 0.08 TCGA-63-A5MS-01 16 67579913 67579913 G T FAM65A Missense_Mutation p.C1170F 0.09 deleterious(0) possibly_damaging(0.639) TCGA-63-A5MS-01 16 682809 682809 C G WFIKKN1 Silent p.L133L 0.10 TCGA-63-A5MS-01 16 71674445 71674445 G A MARVELD3 Missense_Mutation p.E250K 0.05 deleterious(0.04) possibly_damaging(0.858) TCGA-63-A5MS-01 16 75563870 75563882 TTTCGGCTCTGTG A CHST5 In_Frame_Del p.P134_N138delinsL 0.11 TCGA-63-A5MS-01 16 84070368 84070368 G A SLC38A8 Silent p.L109L 0.13 TCGA-63-A5MS-01 16 84212541 84212541 G A TAF1C 3'UTR 0.07 TCGA-63-A5MS-01 16 89169066 89169066 G A ACSF3 Missense_Mutation p.V241M 0.07 deleterious(0.01) probably_damaging(0.947) TCGA-63-A5MS-01 17 11554388 11554388 G C DNAH9 Silent p.L700L 0.10 TCGA-63-A5MS-01 17 16137377 16137377 G A PIGL Missense_Mutation p.D110N 0.26 tolerated(0.1) benign(0.052) TCGA-63-A5MS-01 17 27062340 27062340 G A NEK8 Missense_Mutation p.G190D 0.09 deleterious(0) probably_damaging(1) TCGA-63-A5MS-01 17 27075394 27075394 C T TRAF4 Nonsense_Mutation p.Q193* 0.12 TCGA-63-A5MS-01 17 30228608 30228608 G C UTP6 Silent p.L13L 0.13 TCGA-63-A5MS-01 17 30315356 30315356 A T SUZ12 Missense_Mutation p.E347D 0.08 tolerated(0.29) benign(0.43) TCGA-63-A5MS-01 17 40327664 40327664 G T KCNH4 Missense_Mutation p.T307N 0.12 deleterious(0.02) probably_damaging(0.978) TCGA-63-A5MS-01 17 46671013 46671013 C G HOXB5 Missense_Mutation p.G11A 0.19 tolerated(0.1) probably_damaging(0.998) TCGA-63-A5MS-01 17 4689456 4689456 G C VMO1 Silent p.L64L 0.15 TCGA-63-A5MS-01 17 49713255 49713255 C G CA10 Missense_Mutation p.W250C 0.17 deleterious(0) probably_damaging(0.979) TCGA-63-A5MS-01 17 67287446 67287446 T C ABCA5 Missense_Mutation p.E506G 0.18 deleterious(0) probably_damaging(0.999) TCGA-63-A5MS-01 17 67287447 67287447 C A ABCA5 Nonsense_Mutation p.E506* 0.18 TCGA-63-A5MS-01 17 7217614 7217614 G A GPS2 Nonsense_Mutation p.Q105* 0.09 TCGA-63-A5MS-01 17 72368688 72368688 G T GPR142 Silent p.A446A 0.17 TCGA-63-A5MS-01 17 74395714 74395714 C A UBE2O Missense_Mutation p.D482Y 0.18 deleterious(0) probably_damaging(0.95) TCGA-63-A5MS-01 17 7578474 7578474 C - TP53 Frame_Shift_Del p.G154Afs*16 0.24 TCGA-63-A5MS-01 17 78319808 78319808 C G RNF213 Missense_Mutation p.S2558C 0.10 probably_damaging(0.999) TCGA-63-A5MS-01 17 78320240 78320240 C G RNF213 Nonsense_Mutation p.S2702* 0.09 TCGA-63-A5MS-01 17 80399061 80399061 C T HEXDC Silent p.L391L 0.08 TCGA-63-A5MS-01 18 12454464 12454464 C G SPIRE1 Missense_Mutation p.V553L 0.13 deleterious(0.01) probably_damaging(0.995) TCGA-63-A5MS-01 18 2587904 2587904 G C NDC80 Missense_Mutation p.E249Q 0.08 tolerated(0.07) benign(0.12) TCGA-63-A5MS-01 18 34854499 34854499 C A CELF4 Intron 0.14 TCGA-63-A5MS-01 18 3581969 3581969 G C DLGAP1 Silent p.A623A 0.08 TCGA-63-A5MS-01 18 3582080 3582080 G C DLGAP1 Silent p.L586L 0.05 TCGA-63-A5MS-01 18 5434041 5434041 C A EPB41L3 Missense_Mutation p.G229C 0.10 deleterious(0) probably_damaging(1) TCGA-63-A5MS-01 18 67563246 67563246 T C CD226 Missense_Mutation p.I140V 0.13 tolerated(1) benign(0.02) TCGA-63-A5MS-01 19 10904478 10904478 G A DNM2 Missense_Mutation p.G359S 0.11 deleterious(0.01) probably_damaging(0.956) TCGA-63-A5MS-01 19 18327577 18327577 T C PDE4C Missense_Mutation p.S487G 0.14 deleterious(0) possibly_damaging(0.769) TCGA-63-A5MS-01 19 18895105 18895112 CTCTGTGT - COMP Frame_Shift_Del p.D659Vfs*40 0.15 TCGA-63-A5MS-01 19 35085161 35085161 C T SCGB2B2 Silent p.L55L 0.08 TCGA-63-A5MS-01 19 35826964 35826964 G T CD22 Missense_Mutation p.Q146H 0.08 deleterious(0.02) benign(0.326) TCGA-63-A5MS-01 19 36018737 36018737 T G SBSN Silent p.A149A 0.12 TCGA-63-A5MS-01 19 36046487 36046487 G A ATP4A Missense_Mutation p.A671V 0.06 tolerated(0.11) possibly_damaging(0.709) TCGA-63-A5MS-01 19 37734220 37734220 C T ZNF383 Missense_Mutation p.T361I 0.16 deleterious(0.02) benign(0.02) TCGA-63-A5MS-01 19 38986919 38986919 G A RYR1 Missense_Mutation p.E2205K 0.04 benign(0.074) TCGA-63-A5MS-01 19 40199870 40199870 G T LGALS14 Missense_Mutation p.A142S 0.06 tolerated(0.6) benign(0.14) TCGA-63-A5MS-01 19 40362766 40362766 G C FCGBP Missense_Mutation p.Q5102E 0.04 probably_damaging(0.949) TCGA-63-A5MS-01 19 40478153 40478153 T C PSMC4 Splice_Site p.X45_splice 0.45 TCGA-63-A5MS-01 19 42474366 42474366 C G ATP1A3 Missense_Mutation p.R851T 0.08 deleterious(0.03) benign(0.295) TCGA-63-A5MS-01 19 42813816 42813816 G - PRR19 Frame_Shift_Del p.E28Nfs*13 0.37 TCGA-63-A5MS-01 19 4292607 4292607 C A TMIGD2 Nonsense_Mutation p.G280* 0.09 TCGA-63-A5MS-01 19 47969455 47969455 G A SLC8A2 Missense_Mutation p.A69V 0.10 tolerated(1) benign(0.024) TCGA-63-A5MS-01 19 49838866 49838866 C T CD37 Silent p.F23F 0.11 TCGA-63-A5MS-01 19 51728763 51728763 G C CD33 Missense_Mutation p.R109S 0.06 deleterious(0.05) benign(0.433) TCGA-63-A5MS-01 19 52719916 52719916 G T PPP2R1A Missense_Mutation p.E376D 0.08 tolerated(0.24) benign(0.003) TCGA-63-A5MS-01 19 55086357 55086376 ATGCCCGTGGGTGGTCCTGG TGT LILRA2 Frame_Shift_Del p.H171Lfs*23 0.15 TCGA-63-A5MS-01 19 55106739 55106739 C A LILRA1 Missense_Mutation p.S178Y 0.10 tolerated(1) benign(0.118) TCGA-63-A5MS-01 19 57286245 57286245 G C ZIM2 Silent p.A465A 0.14 TCGA-63-A5MS-01 19 6837023 6837023 G T VAV1 Missense_Mutation p.G648C 0.09 deleterious(0) probably_damaging(0.994) TCGA-63-A5MS-01 19 7506836 7506836 G C ARHGEF18 Missense_Mutation p.D232H 0.05 deleterious(0) probably_damaging(0.967) TCGA-63-A5MS-01 19 9068848 9068848 T A MUC16 Missense_Mutation p.M6200L 0.07 unknown(0) TCGA-63-A5MS-01 1 109242711 109242711 G C PRPF38B 3'UTR 0.11 TCGA-63-A5MS-01 1 109795635 109795635 G C CELSR2 Silent p.L978L 0.14 TCGA-63-A5MS-01 1 109808384 109808384 C A CELSR2 Missense_Mutation p.P1919T 0.09 tolerated(0.1) benign(0.017) TCGA-63-A5MS-01 1 110774862 110774862 C T KCNC4 Silent p.D613D 0.08 TCGA-63-A5MS-01 1 111854317 111854317 T A CHIA Missense_Mutation p.V11D 0.12 tolerated(0.08) benign(0.002) TCGA-63-A5MS-01 1 112247025 112247025 G C RAP1A Missense_Mutation p.E129Q 0.07 tolerated(0.27) benign(0.083) TCGA-63-A5MS-01 1 147092228 147092228 A T BCL9 Missense_Mutation p.D756V 0.14 tolerated(0.22) benign(0.046) TCGA-63-A5MS-01 1 151261106 151261106 G A ZNF687 Missense_Mutation p.G740S 0.09 deleterious(0.01) benign(0.145) TCGA-63-A5MS-01 1 151372558 151372570 TCCGCAACATCTC - PSMB4 Frame_Shift_Del p.R82Afs*23 0.14 TCGA-63-A5MS-01 1 152282608 152282608 T - FLG Frame_Shift_Del p.K1585Rfs*121 0.08 TCGA-63-A5MS-01 1 152770463 152770463 A T LCE1D Missense_Mutation p.S65C 0.11 unknown(0) TCGA-63-A5MS-01 1 154961365 154961365 A C FLAD1 Intron 0.09 TCGA-63-A5MS-01 1 155019784 155019785 - A DCST1 Frame_Shift_Ins p.M537Nfs*61 0.20 TCGA-63-A5MS-01 1 155448901 155448901 G A ASH1L Missense_Mutation p.R1254C 0.26 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-63-A5MS-01 1 156510582 156510582 C A IQGAP3 Missense_Mutation p.R886L 0.23 deleterious(0) probably_damaging(0.96) TCGA-63-A5MS-01 1 156642806 156642806 G T NES Missense_Mutation p.P392T 0.10 deleterious(0) probably_damaging(0.989) TCGA-63-A5MS-01 1 157804381 157804381 C A CD5L Missense_Mutation p.Q178H 0.30 deleterious(0) probably_damaging(0.991) TCGA-63-A5MS-01 1 15802643 15802643 C G CELA2B Missense_Mutation p.S8C 0.37 deleterious(0.05) benign(0.016) TCGA-63-A5MS-01 1 16095030 16095030 C T FBLIM1 Missense_Mutation p.A149V 0.18 tolerated(0.22) benign(0.002) TCGA-63-A5MS-01 1 169394099 169394099 G T CCDC181 Missense_Mutation p.L23M 0.08 deleterious(0.01) probably_damaging(1) TCGA-63-A5MS-01 1 177899048 177899048 C A SEC16B Missense_Mutation p.S1043I 0.26 deleterious(0.02) possibly_damaging(0.794) TCGA-63-A5MS-01 1 179322737 179322737 T C SOAT1 Silent p.Y538Y 0.27 TCGA-63-A5MS-01 1 182993167 182993167 C T LAMC1 Silent p.L106L 0.08 TCGA-63-A5MS-01 1 183617100 183617100 G - APOBEC4 Frame_Shift_Del p.Q273Kfs*23 0.17 TCGA-63-A5MS-01 1 22207959 22207959 G A HSPG2 Missense_Mutation p.P564L 0.13 benign(0.019) TCGA-63-A5MS-01 1 223283943 223283943 G T TLR5 Missense_Mutation p.Q811K 0.42 tolerated(0.15) benign(0.344) TCGA-63-A5MS-01 1 223402628 223402628 G A SUSD4 Missense_Mutation p.P276L 0.32 deleterious(0) probably_damaging(0.978) TCGA-63-A5MS-01 1 238090271 238090271 G T RP11-193H5.1 RNA 0.28 TCGA-63-A5MS-01 1 240370513 240370513 C A FMN2 Missense_Mutation p.H801N 0.08 unknown(0) TCGA-63-A5MS-01 1 241953920 241953920 A G WDR64 Silent p.L963L 0.45 TCGA-63-A5MS-01 1 244641266 244641266 G T C1orf101 Missense_Mutation p.V83F 0.41 deleterious(0) probably_damaging(0.998) TCGA-63-A5MS-01 1 247274853 247274853 C A C1orf229 Missense_Mutation p.G225V 0.35 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-63-A5MS-01 1 247274854 247274854 C A C1orf229 Missense_Mutation p.G225W 0.41 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-63-A5MS-01 1 26737909 26737909 G C LIN28A Missense_Mutation p.E22Q 0.12 tolerated(0.44) benign(0.089) TCGA-63-A5MS-01 1 27121608 27121608 C G PIGV Missense_Mutation p.S361R 0.08 tolerated(0.94) benign(0.002) TCGA-63-A5MS-01 1 27238496 27238496 G T NR0B2 Missense_Mutation p.P205H 0.26 deleterious(0.03) probably_damaging(0.928) TCGA-63-A5MS-01 1 36226470 36226470 G A CLSPN Missense_Mutation p.A351V 0.09 tolerated(0.1) benign(0.003) TCGA-63-A5MS-01 1 40149648 40149648 G T HPCAL4 Missense_Mutation p.D113E 0.14 deleterious(0.02) possibly_damaging(0.506) TCGA-63-A5MS-01 1 43637762 43637762 C G EBNA1BP2 Missense_Mutation p.E65Q 0.12 deleterious(0.03) benign(0.154) TCGA-63-A5MS-01 1 44437496 44437496 C T DPH2 Nonsense_Mutation p.Q308* 0.15 TCGA-63-A5MS-01 1 44437695 44437695 C G DPH2 Missense_Mutation p.P374R 0.14 tolerated(0.19) benign(0.017) TCGA-63-A5MS-01 1 45340490 45340490 A T EIF2B3 Silent p.V354V 0.06 TCGA-63-A5MS-01 1 45479625 45479625 C T UROD Silent p.T173T 0.08 TCGA-63-A5MS-01 1 45480359 45480359 T C UROD Intron 0.09 TCGA-63-A5MS-01 1 45805854 45805854 G A TOE1 5'UTR 0.15 TCGA-63-A5MS-01 1 46746886 46746886 C G LRRC41 Missense_Mutation p.R556P 0.17 tolerated(0.2) possibly_damaging(0.655) TCGA-63-A5MS-01 1 54661206 54661206 G A CYB5RL Silent p.C28C 0.10 TCGA-63-A5MS-01 1 6196858 6196858 A T CHD5 Missense_Mutation p.I835N 0.10 deleterious(0.02) possibly_damaging(0.673) TCGA-63-A5MS-01 1 70504984 70504984 C A LRRC7 Missense_Mutation p.S1121R 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-63-A5MS-01 1 78207073 78207073 C A USP33 Missense_Mutation p.W72C 0.12 deleterious(0) probably_damaging(0.949) TCGA-63-A5MS-01 1 976982 976982 C T AGRN Silent p.D359D 0.12 TCGA-63-A5MS-01 1 9910624 9910624 C A CTNNBIP1 3'UTR 0.30 TCGA-63-A5MS-01 20 1433199 1433199 C A NSFL1C Missense_Mutation p.D244Y 0.05 deleterious(0) probably_damaging(0.947) TCGA-63-A5MS-01 20 1961538 1961538 G A PDYN Silent p.L66L 0.06 TCGA-63-A5MS-01 20 2442386 2442386 G A SNRPB 3'UTR 0.34 TCGA-63-A5MS-01 20 43118186 43118186 G - TTPAL 3'UTR 0.21 TCGA-63-A5MS-01 20 43933296 43933296 C T MATN4 Missense_Mutation p.R72H 0.23 possibly_damaging(0.884) TCGA-63-A5MS-01 20 4680172 4680172 G C PRNP Silent p.P102P 0.12 TCGA-63-A5MS-01 20 60910092 60910095 AGTC - LAMA5 Frame_Shift_Del p.D822Ifs*98 0.09 TCGA-63-A5MS-01 20 61981981 61981981 G A CHRNA4 Missense_Mutation p.T261I 0.08 deleterious(0) probably_damaging(0.994) TCGA-63-A5MS-01 20 62321775 62321775 C A RTEL1 Missense_Mutation p.S822R 0.11 deleterious(0.02) probably_damaging(0.998) TCGA-63-A5MS-01 21 45706881 45706881 C T AIRE Missense_Mutation p.R110W 0.09 deleterious(0) probably_damaging(0.999) TCGA-63-A5MS-01 21 45951009 45951009 C A TSPEAR Missense_Mutation p.D184Y 0.27 deleterious(0.02) probably_damaging(0.979) TCGA-63-A5MS-01 22 17468908 17468908 C A GAB4 Missense_Mutation p.A210S 0.19 tolerated(0.16) benign(0.002) TCGA-63-A5MS-01 22 26219571 26219571 A G MYO18B Missense_Mutation p.H874R 0.04 deleterious(0) probably_damaging(1) TCGA-63-A5MS-01 22 38041515 38041515 G C SH3BP1 Missense_Mutation p.E308Q 0.05 deleterious(0.02) probably_damaging(1) TCGA-63-A5MS-01 22 38318053 38318053 C A MICALL1 Missense_Mutation p.A215E 0.06 deleterious(0) possibly_damaging(0.903) TCGA-63-A5MS-01 22 39380126 39380126 G C APOBEC3B Missense_Mutation p.E22Q 0.05 tolerated(0.33) benign(0.214) TCGA-63-A5MS-01 22 41574095 41574095 A T EP300 Missense_Mutation p.N2127I 0.06 benign(0.307) TCGA-63-A5MS-01 22 50278110 50278110 C T ZBED4 Missense_Mutation p.A267V 0.09 tolerated(1) benign(0.004) TCGA-63-A5MS-01 22 50721858 50721858 C T PLXNB2 Missense_Mutation p.E863K 0.12 tolerated(0.34) benign(0.007) TCGA-63-A5MS-01 22 50904675 50904675 C A SBF1 Silent p.V267V 0.17 TCGA-63-A5MS-01 2 110881372 110881372 A T NPHP1 Missense_Mutation p.V733E 0.07 deleterious_low_confidence(0.02) benign(0.302) TCGA-63-A5MS-01 2 120639702 120639702 T - PTPN4 Frame_Shift_Del p.L149* 0.12 TCGA-63-A5MS-01 2 128015037 128015037 G C ERCC3 3'UTR 0.13 TCGA-63-A5MS-01 2 131976090 131976090 G T POTEE Missense_Mutation p.G39C 0.13 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-63-A5MS-01 2 132241538 132241538 T C MZT2A 3'UTR 0.14 TCGA-63-A5MS-01 2 136481857 136481857 C T R3HDM1 Nonsense_Mutation p.Q1099* 0.11 TCGA-63-A5MS-01 2 136505926 136505926 A G UBXN4 Missense_Mutation p.I58V 0.24 tolerated(0.5) benign(0.019) TCGA-63-A5MS-01 2 141459345 141459345 G T LRP1B Silent p.T2124T 0.07 TCGA-63-A5MS-01 2 141707846 141707846 C A LRP1B Missense_Mutation p.G1032W 0.13 probably_damaging(0.999) TCGA-63-A5MS-01 2 144764957 144764957 C A GTDC1 Missense_Mutation p.D223Y 0.11 deleterious_low_confidence(0.01) benign(0.423) TCGA-63-A5MS-01 2 164467362 164467362 C G FIGN Missense_Mutation p.G327A 0.06 tolerated(0.22) possibly_damaging(0.631) TCGA-63-A5MS-01 2 166211135 166211135 A G SCN2A Missense_Mutation p.N1118S 0.11 tolerated(0.11) possibly_damaging(0.615) TCGA-63-A5MS-01 2 170072852 170072852 G C LRP2 Missense_Mutation p.L1913V 0.21 possibly_damaging(0.547) TCGA-63-A5MS-01 2 179463392 179463392 C T TTN Intron 0.08 TCGA-63-A5MS-01 2 179569284 179569284 C T TTN Missense_Mutation p.R9972Q 0.17 TCGA-63-A5MS-01 2 183623969 183623969 G C DNAJC10 Missense_Mutation p.D694H 0.07 deleterious(0) probably_damaging(1) TCGA-63-A5MS-01 2 189849501 189849501 G T COL3A1 Missense_Mutation p.C32F 0.09 unknown(0) TCGA-63-A5MS-01 2 189868707 189868707 G C COL3A1 Splice_Site p.X888_splice 0.11 TCGA-63-A5MS-01 2 197791331 197791331 G A PGAP1 Missense_Mutation p.H4Y 0.14 deleterious_low_confidence(0.01) benign(0.053) TCGA-63-A5MS-01 2 205986363 205986363 C T PARD3B Silent p.L285L 0.19 TCGA-63-A5MS-01 2 207175058 207175058 C G ZDBF2 Missense_Mutation p.Q1936E 0.11 tolerated(0.33) benign(0) TCGA-63-A5MS-01 2 208842294 208842294 G A PLEKHM3 Silent p.F209F 0.14 TCGA-63-A5MS-01 2 208993142 208993142 C G CRYGC Missense_Mutation p.E104Q 0.06 deleterious(0) possibly_damaging(0.797) TCGA-63-A5MS-01 2 211502457 211502457 G T CPS1 Missense_Mutation p.A913S 0.14 deleterious(0.04) possibly_damaging(0.865) TCGA-63-A5MS-01 2 21237966 21237966 G T APOB Missense_Mutation p.H1225Q 0.17 benign(0.006) TCGA-63-A5MS-01 2 216230346 216230346 G T FN1 Nonsense_Mutation p.C2342* 0.16 TCGA-63-A5MS-01 2 218683043 218683043 G A TNS1 Nonsense_Mutation p.Q1234* 0.12 TCGA-63-A5MS-01 2 219896216 219896216 A G CCDC108 Silent p.N270N 0.17 TCGA-63-A5MS-01 2 225662588 225662588 C T DOCK10 Silent p.L1535L 0.14 TCGA-63-A5MS-01 2 225751240 225751240 T C DOCK10 Missense_Mutation p.Y142C 0.38 tolerated(0.21) benign(0.005) TCGA-63-A5MS-01 2 227873012 227873012 C G COL4A4 Missense_Mutation p.G1511R 0.09 unknown(0) TCGA-63-A5MS-01 2 228882033 228882033 G C SPHKAP Missense_Mutation p.S1179R 0.17 deleterious(0) possibly_damaging(0.585) TCGA-63-A5MS-01 2 228882680 228882680 T C SPHKAP Missense_Mutation p.R964G 0.12 tolerated(0.27) benign(0.05) TCGA-63-A5MS-01 2 233322349 233322349 C T ALPI Silent p.S241S 0.11 TCGA-63-A5MS-01 2 234343508 234343508 G A DGKD Missense_Mutation p.A183T 0.05 tolerated(0.06) possibly_damaging(0.555) TCGA-63-A5MS-01 2 235951078 235951078 G T SH3BP4 Missense_Mutation p.Q555H 0.14 deleterious(0.02) benign(0.03) TCGA-63-A5MS-01 2 239988460 239988460 G A HDAC4 Silent p.C982C 0.15 TCGA-63-A5MS-01 2 24222826 24222826 T A UBXN2A 3'UTR 0.17 TCGA-63-A5MS-01 2 27165609 27165609 G A DPYSL5 Silent p.Q477Q 0.07 TCGA-63-A5MS-01 2 29294898 29294898 G C C2orf71 Missense_Mutation p.L744V 0.16 tolerated(0.16) benign(0.073) TCGA-63-A5MS-01 2 33623535 33623535 G T LTBP1 Missense_Mutation p.V1697L 0.10 deleterious(0.03) benign(0.434) TCGA-63-A5MS-01 2 37287800 37287800 T C HEATR5B Silent p.E591E 0.17 TCGA-63-A5MS-01 2 45169549 45169549 G C SIX3 Silent p.T102T 0.07 TCGA-63-A5MS-01 2 55825623 55825623 C G SMEK2 Missense_Mutation p.E284Q 0.09 deleterious(0.05) probably_damaging(0.982) TCGA-63-A5MS-01 2 5833531 5833531 C A SOX11 Missense_Mutation p.D226E 0.20 tolerated(0.86) benign(0.002) TCGA-63-A5MS-01 2 61014690 61014690 G T PAPOLG Missense_Mutation p.R444I 0.10 deleterious(0) benign(0.071) TCGA-63-A5MS-01 2 62450306 62450306 G A B3GNT2 Silent p.L317L 0.06 TCGA-63-A5MS-01 2 72362007 72362007 C T CYP26B1 Silent p.E248E 0.10 TCGA-63-A5MS-01 2 79312726 79312726 G T REG1B Missense_Mutation p.R109S 0.16 tolerated(0.78) possibly_damaging(0.553) TCGA-63-A5MS-01 2 80085230 80085230 G C CTNNA2 Missense_Mutation p.L130F 0.27 deleterious(0.02) probably_damaging(0.943) TCGA-63-A5MS-01 2 95774093 95774093 T C MRPS5 Missense_Mutation p.Q155R 0.08 tolerated(0.08) possibly_damaging(0.778) TCGA-63-A5MS-01 2 99901223 99901223 C G LYG1 Missense_Mutation p.E132Q 0.12 tolerated(0.38) benign(0.068) TCGA-63-A5MS-01 3 105250896 105250896 G A ALCAM Missense_Mutation p.E149K 0.07 tolerated(0.16) benign(0.217) TCGA-63-A5MS-01 3 107096482 107096482 G A CCDC54 Missense_Mutation p.M16I 0.25 tolerated(0.18) benign(0.028) TCGA-63-A5MS-01 3 109050879 109050879 C A DPPA4 Splice_Site p.X60_splice 0.08 TCGA-63-A5MS-01 3 111997691 111997691 G C SLC9C1 Missense_Mutation p.A68G 0.10 deleterious(0.02) possibly_damaging(0.811) TCGA-63-A5MS-01 3 113118754 113118754 A G WDR52 Missense_Mutation p.M523T 0.09 tolerated(0.45) benign(0.02) TCGA-63-A5MS-01 3 121195530 121195530 C G POLQ Missense_Mutation p.E2088Q 0.27 deleterious(0.04) probably_damaging(0.998) TCGA-63-A5MS-01 3 123987631 123987631 C - KALRN Frame_Shift_Del p.S166Pfs*3 0.10 TCGA-63-A5MS-01 3 133525492 133525492 G A SRPRB Missense_Mutation p.R65K 0.07 tolerated(0.15) benign(0.05) TCGA-63-A5MS-01 3 1337463 1337463 C A CNTN6 Silent p.P211P 0.08 TCGA-63-A5MS-01 3 136701087 136701087 G A IL20RB Missense_Mutation p.D101N 0.12 deleterious(0.01) possibly_damaging(0.579) TCGA-63-A5MS-01 3 140409898 140409898 T C TRIM42 Missense_Mutation p.M650T 0.09 tolerated(1) benign(0.001) TCGA-63-A5MS-01 3 141697401 141697401 T C TFDP2 Silent p.S160S 0.22 TCGA-63-A5MS-01 3 147128800 147128800 C - ZIC1 Frame_Shift_Del p.C304Afs*16 0.08 TCGA-63-A5MS-01 3 150264555 150264555 A G EIF2A 5'UTR 0.32 TCGA-63-A5MS-01 3 155200507 155200507 C T PLCH1 Missense_Mutation p.G1111D 0.06 tolerated_low_confidence(0.58) benign(0.002) TCGA-63-A5MS-01 3 155282737 155282737 G A PLCH1 Missense_Mutation p.R334W 0.08 tolerated(0.46) possibly_damaging(0.512) TCGA-63-A5MS-01 3 160149461 160149461 G C SMC4 Missense_Mutation p.D1049H 0.10 tolerated(0.09) possibly_damaging(0.537) TCGA-63-A5MS-01 3 160804320 160804320 G A B3GALNT1 Missense_Mutation p.H75Y 0.09 deleterious(0.01) benign(0.016) TCGA-63-A5MS-01 3 164764750 164764750 G C SI Nonsense_Mutation p.S589* 0.06 TCGA-63-A5MS-01 3 173997305 173997305 A T NLGN1 Missense_Mutation p.H505L 0.20 tolerated(0.06) probably_damaging(0.997) TCGA-63-A5MS-01 3 178525236 178525236 T C KCNMB2 Silent p.Y13Y 0.18 TCGA-63-A5MS-01 3 193855970 193855970 C G HES1 Missense_Mutation p.S264C 0.12 tolerated(0.06) benign(0.428) TCGA-63-A5MS-01 3 197401389 197401389 T C KIAA0226 3'Flank 0.23 TCGA-63-A5MS-01 3 19921235 19921235 C A EFHB Missense_Mutation p.W797L 0.12 deleterious(0.02) possibly_damaging(0.566) TCGA-63-A5MS-01 3 23258771 23258771 A G UBE2E2 Silent p.A65A 0.10 TCGA-63-A5MS-01 3 38409696 38409696 C G XYLB Missense_Mutation p.S198R 0.07 deleterious(0) probably_damaging(0.99) TCGA-63-A5MS-01 3 38519971 38519971 A G ACVR2B Missense_Mutation p.M210V 0.08 tolerated(0.51) benign(0.002) TCGA-63-A5MS-01 3 46245374 46245374 G C CCR1 Missense_Mutation p.A144G 0.13 deleterious(0) possibly_damaging(0.885) TCGA-63-A5MS-01 3 46940267 46940267 G A PTH1R Missense_Mutation p.E252K 0.15 tolerated(0.05) benign(0.068) TCGA-63-A5MS-01 3 69230202 69230202 C A FRMD4B Missense_Mutation p.R900L 0.14 deleterious(0) probably_damaging(0.998) TCGA-63-A5MS-01 3 89521622 89521622 A T EPHA3 Missense_Mutation p.N900I 0.08 tolerated(0.44) probably_damaging(0.993) TCGA-63-A5MS-01 3 97852157 97852157 A T OR5H1 Missense_Mutation p.I206F 0.17 deleterious(0.01) probably_damaging(0.931) TCGA-63-A5MS-01 3 99895244 99895244 G A CMSS1 Missense_Mutation p.M247I 0.17 deleterious(0.02) benign(0.01) TCGA-63-A5MS-01 4 106552235 106552235 C A ARHGEF38 Intron 0.09 TCGA-63-A5MS-01 4 114163315 114163315 A T ANK2 Missense_Mutation p.M281L 0.08 probably_damaging(0.995) TCGA-63-A5MS-01 4 120057758 120057758 T C MYOZ2 Splice_Site p.X26_splice 0.09 TCGA-63-A5MS-01 4 147561864 147561864 C G POU4F2 Missense_Mutation p.I378M 0.09 deleterious(0.01) possibly_damaging(0.761) TCGA-63-A5MS-01 4 16257980 16257980 G T TAPT1-AS1 RNA 0.13 TCGA-63-A5MS-01 4 164246540 164246540 G T NPY1R Missense_Mutation p.T357K 0.11 deleterious(0) probably_damaging(0.98) TCGA-63-A5MS-01 4 178357506 178357506 C A AGA Splice_Site p.X208_splice 0.15 TCGA-63-A5MS-01 4 178357507 178357507 T G AGA Splice_Site p.X208_splice 0.15 TCGA-63-A5MS-01 4 186066067 186066067 C G SLC25A4 Silent p.L87L 0.07 TCGA-63-A5MS-01 4 2701912 2701912 A T FAM193A Missense_Mutation p.Q1047L 0.12 tolerated(0.05) probably_damaging(0.946) TCGA-63-A5MS-01 4 2934179 2934179 G T MFSD10 Missense_Mutation p.L198M 0.15 deleterious(0.03) probably_damaging(0.996) TCGA-63-A5MS-01 4 3117092 3117092 C T HTT Missense_Mutation p.A270V 0.06 possibly_damaging(0.857) TCGA-63-A5MS-01 4 4228339 4228339 C A OTOP1 Missense_Mutation p.A85S 0.09 tolerated(0.59) benign(0.008) TCGA-63-A5MS-01 4 47939016 47939016 C T CNGA1 Missense_Mutation p.V568I 0.09 tolerated(0.15) probably_damaging(0.999) TCGA-63-A5MS-01 4 48173392 48173392 T A TEC Missense_Mutation p.L106F 0.10 deleterious(0) probably_damaging(0.961) TCGA-63-A5MS-01 4 54140146 54140146 G C SCFD2 Silent p.L386L 0.08 TCGA-63-A5MS-01 4 57843510 57843510 G A NOA1 Missense_Mutation p.P81L 0.09 deleterious(0) benign(0.223) TCGA-63-A5MS-01 4 57881725 57881725 C T POLR2B Missense_Mutation p.R620C 0.15 deleterious(0) probably_damaging(1) TCGA-63-A5MS-01 4 68928290 68928290 A T TMPRSS11F Intron 0.13 TCGA-63-A5MS-01 4 71509861 71509861 C A ENAM Silent p.T906T 0.11 TCGA-63-A5MS-01 4 88401636 88401636 C G SPARCL1 Missense_Mutation p.A569P 0.07 deleterious(0) possibly_damaging(0.812) TCGA-63-A5MS-01 5 10258518 10258518 T C CCT5 Silent p.I248I 0.06 TCGA-63-A5MS-01 5 114499424 114499424 T A TRIM36 Missense_Mutation p.E30V 0.25 deleterious(0) probably_damaging(1) TCGA-63-A5MS-01 5 131324581 131324581 A G ACSL6 Missense_Mutation p.L190P 0.11 deleterious(0.03) probably_damaging(1) TCGA-63-A5MS-01 5 140188052 140188052 C T PCDHA4 Missense_Mutation p.A427V 0.13 deleterious_low_confidence(0.05) benign(0.325) TCGA-63-A5MS-01 5 140699106 140699106 A G TAF7 Missense_Mutation p.L169S 0.12 deleterious(0) probably_damaging(1) TCGA-63-A5MS-01 5 140720694 140720694 G T PCDHGA2 Missense_Mutation p.W719L 0.13 deleterious_low_confidence(0) possibly_damaging(0.589) TCGA-63-A5MS-01 5 14508426 14508426 G T TRIO Silent p.T3063T 0.43 TCGA-63-A5MS-01 5 156484986 156484986 C A HAVCR1 5'UTR 0.12 TCGA-63-A5MS-01 5 168244305 168244305 C G SLIT3 Missense_Mutation p.A265P 0.09 deleterious(0) benign(0.079) TCGA-63-A5MS-01 5 177034523 177034523 C G B4GALT7 Missense_Mutation p.R212G 0.12 tolerated(0.11) benign(0.119) TCGA-63-A5MS-01 5 177675253 177675253 G A COL23A1 Silent p.G384G 0.09 TCGA-63-A5MS-01 5 35965582 35965582 T G UGT3A1 Missense_Mutation p.N250T 0.06 deleterious(0.02) probably_damaging(0.973) TCGA-63-A5MS-01 5 43529971 43529971 C T PAIP1 Silent p.E421E 0.07 TCGA-63-A5MS-01 5 6616912 6616912 C A NSUN2 Missense_Mutation p.V317L 0.11 deleterious(0.03) probably_damaging(0.914) TCGA-63-A5MS-01 5 70840896 70840896 G T BDP1 Missense_Mutation p.E2198D 0.21 tolerated(0.07) possibly_damaging(0.652) TCGA-63-A5MS-01 5 72419662 72419662 G T TMEM171 Missense_Mutation p.E154D 0.22 tolerated(0.24) benign(0.187) TCGA-63-A5MS-01 5 75871592 75871592 G A IQGAP2 Silent p.L152L 0.15 TCGA-63-A5MS-01 5 83259097 83259097 G C EDIL3 Missense_Mutation p.S407C 0.08 deleterious(0) probably_damaging(0.999) TCGA-63-A5MS-01 5 96363483 96363483 A T LNPEP Missense_Mutation p.T971S 0.24 deleterious(0) possibly_damaging(0.898) TCGA-63-A5MS-01 6 111694349 111694349 C G REV3L Missense_Mutation p.E1737Q 0.06 tolerated(0.12) benign(0.071) TCGA-63-A5MS-01 6 111912823 111912823 G C TRAF3IP2 Nonsense_Mutation p.S156* 0.05 TCGA-63-A5MS-01 6 112394014 112394014 T G TUBE1 Silent p.A347A 0.07 TCGA-63-A5MS-01 6 123377017 123377017 G C CLVS2 Missense_Mutation p.E248Q 0.09 deleterious(0.02) possibly_damaging(0.883) TCGA-63-A5MS-01 6 130762618 130762619 - T TMEM200A Frame_Shift_Ins p.G352Wfs*70 0.18 TCGA-63-A5MS-01 6 131919748 131919748 G A MED23 Missense_Mutation p.L792F 0.17 deleterious(0) probably_damaging(0.998) TCGA-63-A5MS-01 6 138610975 138610975 A T KIAA1244 Nonsense_Mutation p.K973* 0.16 TCGA-63-A5MS-01 6 152673233 152673233 C T SYNE1 Missense_Mutation p.E3837K 0.14 benign(0.077) TCGA-63-A5MS-01 6 153043167 153043167 A T MYCT1 Nonsense_Mutation p.R163* 0.17 TCGA-63-A5MS-01 6 155451067 155451067 C G TIAM2 Missense_Mutation p.S237C 0.04 deleterious(0) probably_damaging(0.984) TCGA-63-A5MS-01 6 162683711 162683711 G T PARK2 Missense_Mutation p.D86E 0.15 tolerated(0.98) benign(0.115) TCGA-63-A5MS-01 6 167438319 167438319 G A FGFR1OP Missense_Mutation p.A286T 0.11 tolerated(0.06) benign(0.022) TCGA-63-A5MS-01 6 167708093 167708093 C T UNC93A Missense_Mutation p.P59L 0.14 deleterious(0) probably_damaging(0.935) TCGA-63-A5MS-01 6 26032003 26032003 C A HIST1H3B Missense_Mutation p.A96S 0.10 deleterious_low_confidence(0.03) benign(0.025) TCGA-63-A5MS-01 6 2685791 2685791 G A MYLK4 Missense_Mutation p.H121Y 0.22 tolerated(0.15) benign(0.033) TCGA-63-A5MS-01 6 30121522 30121522 T A TRIM10 3'UTR 0.12 TCGA-63-A5MS-01 6 33290759 33290759 C A DAXX 5'UTR 0.24 TCGA-63-A5MS-01 6 36762389 36762389 G T CPNE5 Missense_Mutation p.P148T 0.21 deleterious(0.04) benign(0) TCGA-63-A5MS-01 6 37298831 37298831 G A TBC1D22B Missense_Mutation p.M467I 0.12 tolerated(0.37) benign(0.004) TCGA-63-A5MS-01 6 38831758 38831758 A C DNAH8 Missense_Mutation p.K1923N 0.21 probably_damaging(1) TCGA-63-A5MS-01 6 41318514 41318514 C A NCR2 Nonsense_Mutation p.S248* 0.09 TCGA-63-A5MS-01 6 42833081 42833081 C T GLTSCR1L Missense_Mutation p.S1046L 0.05 tolerated_low_confidence(0.06) benign(0.007) TCGA-63-A5MS-01 6 46657174 46657174 G T TDRD6 Missense_Mutation p.V437L 0.12 tolerated(0.09) benign(0.012) TCGA-63-A5MS-01 6 47846604 47846604 A G PTCHD4 Missense_Mutation p.V659A 0.08 tolerated(1) benign(0.011) TCGA-63-A5MS-01 6 49753752 49753752 C A PGK2 Missense_Mutation p.W383C 0.05 tolerated(0.09) probably_damaging(0.96) TCGA-63-A5MS-01 6 49754405 49754405 A T PGK2 Missense_Mutation p.F166I 0.16 deleterious(0) probably_damaging(1) TCGA-63-A5MS-01 6 52619870 52619870 C G GSTA2 Missense_Mutation p.G48A 0.07 deleterious(0) possibly_damaging(0.662) TCGA-63-A5MS-01 6 64286805 64286805 C T PTP4A1 Missense_Mutation p.P7L 0.27 deleterious(0.04) benign(0.061) TCGA-63-A5MS-01 6 7594019 7594019 C G SNRNP48 Missense_Mutation p.S70C 0.08 deleterious(0) probably_damaging(0.992) TCGA-63-A5MS-01 6 86324911 86324911 C G SYNCRIP Missense_Mutation p.G479R 0.22 tolerated(0.09) unknown(0) TCGA-63-A5MS-01 7 100799932 100799932 C T AP1S1 Silent p.L21L 0.30 TCGA-63-A5MS-01 7 11415354 11415354 G T THSD7A 3'UTR 0.30 TCGA-63-A5MS-01 7 122303455 122303455 C T CADPS2 Missense_Mutation p.D208N 0.06 deleterious(0) probably_damaging(0.969) TCGA-63-A5MS-01 7 128040571 128040571 G A IMPDH1 Missense_Mutation p.T201M 0.13 tolerated(0.19) benign(0.223) TCGA-63-A5MS-01 7 135262632 135262632 C T NUP205 Missense_Mutation p.T246I 0.23 deleterious(0) probably_damaging(0.968) TCGA-63-A5MS-01 7 137761286 137761286 C T AKR1D1 Missense_Mutation p.H8Y 0.12 tolerated(0.05) probably_damaging(1) TCGA-63-A5MS-01 7 141464004 141464004 C G TAS2R3 Missense_Mutation p.Q16E 0.05 tolerated(1) benign(0.01) TCGA-63-A5MS-01 7 148288096 148288096 C T C7orf33 Missense_Mutation p.L27F 0.13 tolerated_low_confidence(0.18) possibly_damaging(0.765) TCGA-63-A5MS-01 7 150845996 150845996 C A GBX1 Missense_Mutation p.G258W 0.07 deleterious(0) probably_damaging(0.924) TCGA-63-A5MS-01 7 1590593 1590593 G A TMEM184A Missense_Mutation p.T82I 0.12 deleterious(0) possibly_damaging(0.845) TCGA-63-A5MS-01 7 34889339 34889339 G T NPSR1 Intron 0.32 TCGA-63-A5MS-01 7 37947000 37947000 G A SFRP4 3'UTR 0.10 TCGA-63-A5MS-01 7 38393580 38393580 G C TRGV4 Missense_Mutation p.I30M 0.06 deleterious(0) benign(0.065) TCGA-63-A5MS-01 7 44012248 44012248 G A POLR2J4 RNA 0.15 TCGA-63-A5MS-01 7 70254757 70254757 C T AUTS2 Missense_Mutation p.S852F 0.12 deleterious(0.03) benign(0.131) TCGA-63-A5MS-01 7 70254758 70254758 C T AUTS2 Silent p.S852S 0.13 TCGA-63-A5MS-01 7 73097220 73097220 C A DNAJC30 Silent p.R178R 0.10 TCGA-63-A5MS-01 7 79082754 79082754 C T MAGI2 5'UTR 0.10 TCGA-63-A5MS-01 7 82544085 82544085 C T PCLO Missense_Mutation p.R4406K 0.19 unknown(0) TCGA-63-A5MS-01 7 82544087 82544087 C A PCLO Missense_Mutation p.M4405I 0.19 unknown(0) TCGA-63-A5MS-01 7 82584714 82584714 T C PCLO Missense_Mutation p.H1852R 0.27 unknown(0) TCGA-63-A5MS-01 7 84651817 84651817 G A SEMA3D Missense_Mutation p.A435V 0.24 tolerated(0.57) benign(0.003) TCGA-63-A5MS-01 7 88966005 88966005 C G ZNF804B Missense_Mutation p.P1237A 0.11 deleterious(0.01) possibly_damaging(0.629) TCGA-63-A5MS-01 7 94293254 94293254 C A PEG10 Missense_Mutation p.A129D 0.10 deleterious(0) probably_damaging(0.999) TCGA-63-A5MS-01 7 99703127 99703127 C G AP4M1 Silent p.L298L 0.17 TCGA-63-A5MS-01 7 99764384 99764384 C A GAL3ST4 Missense_Mutation p.R57L 0.18 tolerated(0.3) benign(0.138) TCGA-63-A5MS-01 8 104709414 104709414 G C RIMS2 Missense_Mutation p.G93R 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-63-A5MS-01 8 110478953 110478953 C A PKHD1L1 Missense_Mutation p.P2854T 0.16 deleterious(0) probably_damaging(0.987) TCGA-63-A5MS-01 8 121530236 121530236 G C MTBP Missense_Mutation p.E798Q 0.06 tolerated(0.31) benign(0.018) TCGA-63-A5MS-01 8 131200367 131200367 C T ASAP1 Silent p.K156K 0.20 TCGA-63-A5MS-01 8 135524793 135524793 C G ZFAT Missense_Mutation p.E1096Q 0.08 deleterious(0.02) possibly_damaging(0.715) TCGA-63-A5MS-01 8 139163669 139163669 C A FAM135B Missense_Mutation p.A1017S 0.09 tolerated(0.64) benign(0.004) TCGA-63-A5MS-01 8 139164244 139164244 G A FAM135B Missense_Mutation p.A825V 0.23 tolerated(0.37) benign(0) TCGA-63-A5MS-01 8 139601579 139601579 C A COL22A1 Missense_Mutation p.G1600C 0.11 unknown(0) TCGA-63-A5MS-01 8 142506466 142506466 C T MROH5 Silent p.L37L 0.11 TCGA-63-A5MS-01 8 144550416 144550416 C T ZC3H3 Missense_Mutation p.G713E 0.06 deleterious(0) benign(0.174) TCGA-63-A5MS-01 8 144620649 144620649 C A ZC3H3 Silent p.S296S 0.14 TCGA-63-A5MS-01 8 144877217 144877217 G T SCRIB Missense_Mutation p.S1279R 0.14 benign(0.027) TCGA-63-A5MS-01 8 27394302 27394302 G A EPHX2 Missense_Mutation p.G391E 0.11 deleterious(0) probably_damaging(0.965) TCGA-63-A5MS-01 8 42873530 42873530 A T HOOK3 Missense_Mutation p.E682D 0.10 deleterious(0.04) probably_damaging(0.992) TCGA-63-A5MS-01 8 48713480 48713480 C G PRKDC Missense_Mutation p.L3329F 0.11 possibly_damaging(0.851) TCGA-63-A5MS-01 8 48887463 48887463 T A MCM4 Missense_Mutation p.L769Q 0.05 deleterious(0) probably_damaging(0.998) TCGA-63-A5MS-01 8 69021854 69021854 G C PREX2 Missense_Mutation p.D1048H 0.15 tolerated_low_confidence(0.28) benign(0.003) TCGA-63-A5MS-01 8 69730564 69730564 T C C8orf34 3'UTR 0.22 TCGA-63-A5MS-01 8 69730565 69730565 G T C8orf34 3'UTR 0.22 TCGA-63-A5MS-01 8 94717232 94717232 T C FAM92A1 Silent p.H142H 0.11 TCGA-63-A5MS-01 9 113562936 113562936 G A MUSK Missense_Mutation p.E760K 0.11 deleterious(0) possibly_damaging(0.586) TCGA-63-A5MS-01 9 116190447 116190447 C T C9orf43 Nonsense_Mutation p.Q351* 0.09 TCGA-63-A5MS-01 9 118101 118101 C G FOXD4 Missense_Mutation p.E7Q 0.08 tolerated(0.08) benign(0.213) TCGA-63-A5MS-01 9 130670603 130670603 T C ST6GALNAC4 3'UTR 0.08 TCGA-63-A5MS-01 9 131584584 131584584 C A C9orf114 3'UTR 0.09 TCGA-63-A5MS-01 9 135538009 135538009 G A DDX31 Missense_Mutation p.S155L 0.07 deleterious(0.02) benign(0.017) TCGA-63-A5MS-01 9 136302973 136302974 - G ADAMTS13 Frame_Shift_Ins p.E515Gfs*19 0.19 TCGA-63-A5MS-01 9 137808303 137808303 C A FCN1 Silent p.V36V 0.12 TCGA-63-A5MS-01 9 139910325 139910325 T A ABCA2 Splice_Site p.X1106_splice 0.16 TCGA-63-A5MS-01 9 140387524 140387524 C T PNPLA7 Missense_Mutation p.R713Q 0.16 deleterious(0.02) benign(0.16) TCGA-63-A5MS-01 9 20414166 20414166 G C MLLT3 Missense_Mutation p.N226K 0.10 tolerated(0.16) benign(0.111) TCGA-63-A5MS-01 9 21974762 21974762 C G CDKN2A Missense_Mutation p.R22P 0.22 deleterious(0.01) possibly_damaging(0.829) TCGA-63-A5MS-01 9 22451857 22451857 G C DMRTA1 Missense_Mutation p.D488H 0.32 tolerated(0.11) benign(0.011) TCGA-63-A5MS-01 9 34971493 34971493 G T KIAA1045 Silent p.S66S 0.21 TCGA-63-A5MS-01 9 6252882 6252882 A G IL33 Silent p.T120T 0.19 TCGA-63-A5MS-01 9 86518080 86518080 C A KIF27 Missense_Mutation p.K451N 0.32 tolerated(0.16) benign(0.081) TCGA-63-A5MS-01 9 88842791 88842791 C A C9orf153 Missense_Mutation p.G74V 0.11 tolerated(0.16) benign(0) TCGA-63-A5MS-01 X 110463624 110463624 G T PAK3 Silent p.L564L 0.16 TCGA-63-A5MS-01 X 135429025 135429025 C A GPR112 Missense_Mutation p.L1054I 0.17 deleterious(0.01) possibly_damaging(0.85) TCGA-63-A5MS-01 X 13727521 13727521 C G RAB9A 3'UTR 0.17 TCGA-63-A5MS-01 X 57021325 57021325 C - SPIN3 Frame_Shift_Del p.G19Afs*9 0.23 TCGA-63-A5MS-01 X 65242548 65242548 C A VSIG4 Intron 0.23 TCGA-63-A5MS-01 X 65476046 65476046 T C HEPH Silent p.L978L 0.38 TCGA-63-A5MS-01 Y 2712227 2712227 T C RPS4Y1 Missense_Mutation p.I64T 0.16 deleterious(0.01) probably_damaging(0.968) TCGA-63-A5MT-01 10 101825104 101825104 C T CPN1 Silent p.V200V 0.20 TCGA-63-A5MT-01 10 103900161 103900161 C T PPRC1 Silent p.I632I 0.18 TCGA-63-A5MT-01 10 104386962 104386962 A T SUFU Missense_Mutation p.M443L 0.15 tolerated(0.25) benign(0.007) TCGA-63-A5MT-01 10 121587002 121587002 C G INPP5F Missense_Mutation p.Q1037E 0.18 tolerated_low_confidence(0.53) benign(0.001) TCGA-63-A5MT-01 10 13167997 13167997 T C OPTN Silent p.H400H 0.19 TCGA-63-A5MT-01 10 134622081 134622081 C G TTC40 Silent p.S2664S 0.16 TCGA-63-A5MT-01 10 28272812 28272812 A C ARMC4 Missense_Mutation p.L260R 0.19 deleterious(0) possibly_damaging(0.897) TCGA-63-A5MT-01 10 47087207 47087207 C A NPY4R Missense_Mutation p.L142I 0.08 deleterious(0) probably_damaging(0.993) TCGA-63-A5MT-01 10 49634540 49634540 C T MAPK8 Missense_Mutation p.A330V 0.14 tolerated(1) benign(0) TCGA-63-A5MT-01 10 50856585 50856585 G T CHAT Silent p.V438V 0.19 TCGA-63-A5MT-01 10 50856586 50856586 G T CHAT Missense_Mutation p.V439L 0.19 tolerated(0.2) benign(0.149) TCGA-63-A5MT-01 10 74114608 74114608 G C DNAJB12 Silent p.L50L 0.19 TCGA-63-A5MT-01 10 74813262 74813262 C T P4HA1 Missense_Mutation p.E184K 0.16 tolerated(0.09) probably_damaging(0.998) TCGA-63-A5MT-01 10 75548458 75548458 C T ZSWIM8 Missense_Mutation p.S80L 0.26 deleterious(0.01) probably_damaging(0.974) TCGA-63-A5MT-01 10 78729764 78729764 C A KCNMA1 Silent p.R718R 0.17 TCGA-63-A5MT-01 10 99186109 99186109 A C PGAM1 Silent p.A15A 0.14 TCGA-63-A5MT-01 11 108165719 108165719 A G ATM Silent p.L1614L 0.44 TCGA-63-A5MT-01 11 110451090 110451090 G A ARHGAP20 Silent p.L860L 0.17 TCGA-63-A5MT-01 11 118403028 118403028 A G TMEM25 Silent p.R78R 0.16 TCGA-63-A5MT-01 11 12229659 12229659 G C MICAL2 Missense_Mutation p.E188Q 0.03 tolerated(0.12) probably_damaging(0.947) TCGA-63-A5MT-01 11 130130982 130130982 C T ZBTB44 Missense_Mutation p.G263S 0.28 tolerated(1) benign(0.006) TCGA-63-A5MT-01 11 14496089 14496089 C T COPB1 Silent p.K563K 0.83 TCGA-63-A5MT-01 11 14529221 14529221 C G PSMA1 Missense_Mutation p.R245T 0.03 tolerated(0.25) benign(0.008) TCGA-63-A5MT-01 11 18500349 18500349 G C LDHAL6A Missense_Mutation p.E311Q 0.09 tolerated(0.07) possibly_damaging(0.454) TCGA-63-A5MT-01 11 18500441 18500441 G C LDHAL6A 3'UTR 0.14 TCGA-63-A5MT-01 11 18587953 18587953 G A UEVLD Missense_Mutation p.S145L 0.09 deleterious(0.02) benign(0.21) TCGA-63-A5MT-01 11 19076995 19076995 G A MRGPRX2 Nonsense_Mutation p.Q319* 0.07 TCGA-63-A5MT-01 11 48511017 48511017 A G OR4A47 Missense_Mutation p.N225D 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.672) TCGA-63-A5MT-01 11 49974068 49974068 A T OR4C13 Missense_Mutation p.I32F 0.11 deleterious_low_confidence(0.04) benign(0.043) TCGA-63-A5MT-01 11 55136005 55136005 G - OR4A15 Frame_Shift_Del p.A216Lfs*12 0.09 TCGA-63-A5MT-01 11 55563350 55563350 T C OR5D14 Missense_Mutation p.C107R 0.18 deleterious(0) benign(0.044) TCGA-63-A5MT-01 11 56510317 56510317 T A OR9G4 Missense_Mutation p.Q324L 0.15 tolerated(0.55) benign(0) TCGA-63-A5MT-01 11 58723498 58723498 T C GLYATL1 Nonstop_Mutation p.*334Qext*14 0.16 TCGA-63-A5MT-01 11 59940439 59940439 C G MS4A6A 3'UTR 0.18 TCGA-63-A5MT-01 11 60482559 60482559 C T MS4A8 Silent p.C200C 0.20 TCGA-63-A5MT-01 11 64033666 64033666 G T PLCB3 Missense_Mutation p.M1086I 0.11 tolerated(0.81) benign(0) TCGA-63-A5MT-01 11 68181420 68181420 G A LRP5 Missense_Mutation p.G923S 0.30 tolerated(0.36) benign(0.013) TCGA-63-A5MT-01 11 86518683 86518683 G T PRSS23 5'UTR 0.21 TCGA-63-A5MT-01 11 92088092 92088092 C A FAT3 Silent p.P938P 0.17 TCGA-63-A5MT-01 11 95546735 95546735 A C CEP57 Silent p.T162T 0.38 TCGA-63-A5MT-01 12 105601779 105601779 G A APPL2 Silent p.S154S 0.15 TCGA-63-A5MT-01 12 109671566 109671566 G T ACACB Missense_Mutation p.V1385F 0.22 deleterious(0) probably_damaging(0.996) TCGA-63-A5MT-01 12 122677551 122677551 G A LRRC43 Missense_Mutation p.G450E 0.14 deleterious(0.01) probably_damaging(0.97) TCGA-63-A5MT-01 12 18656283 18656283 C T PIK3C2G Missense_Mutation p.P988S 0.10 tolerated(0.72) possibly_damaging(0.896) TCGA-63-A5MT-01 12 21350122 21350122 G T SLCO1B1 Missense_Mutation p.G324C 0.12 deleterious(0) probably_damaging(0.997) TCGA-63-A5MT-01 12 32791771 32791771 G T FGD4 Intron 0.29 TCGA-63-A5MT-01 12 43770396 43770396 C A ADAMTS20 Missense_Mutation p.G1686C 0.17 deleterious(0) probably_damaging(0.998) TCGA-63-A5MT-01 12 45823005 45823005 C A ANO6 Missense_Mutation p.H903N 0.12 tolerated(0.14) benign(0.002) TCGA-63-A5MT-01 12 49666431 49666431 C T TUBA1C Silent p.T257T 0.14 TCGA-63-A5MT-01 12 53187934 53187934 A C KRT3 Missense_Mutation p.L276R 0.19 deleterious(0) probably_damaging(0.998) TCGA-63-A5MT-01 12 6309618 6309618 G A CD9 5'UTR 0.06 TCGA-63-A5MT-01 12 66771023 66771023 C G GRIP1 Missense_Mutation p.E836D 0.14 tolerated(0.6) benign(0.051) TCGA-63-A5MT-01 12 70824477 70824477 C T KCNMB4 3'UTR 0.21 TCGA-63-A5MT-01 12 9013756 9013756 G A A2ML1 Missense_Mutation p.R1122Q 0.20 tolerated(1) benign(0.003) TCGA-63-A5MT-01 12 993921 993921 A G WNK1 Silent p.E1317E 0.09 TCGA-63-A5MT-01 13 113826487 113826487 T C PROZ 3'UTR 0.59 TCGA-63-A5MT-01 13 25009347 25009347 G A PARP4 Missense_Mutation p.S1311F 0.27 deleterious(0.02) benign(0.361) TCGA-63-A5MT-01 13 25670582 25670582 A G PABPC3 Silent p.V82V 0.21 TCGA-63-A5MT-01 13 26133904 26133904 G A ATP8A2 Splice_Site p.X466_splice 0.14 TCGA-63-A5MT-01 13 40261846 40261846 T C COG6 Missense_Mutation p.Y307H 0.24 deleterious(0) probably_damaging(1) TCGA-63-A5MT-01 13 84454300 84454300 T A SLITRK1 Missense_Mutation p.N448I 0.11 deleterious(0) benign(0.348) TCGA-63-A5MT-01 14 100792139 100792139 G C SLC25A47 Missense_Mutation p.A15P 0.39 deleterious(0.01) probably_damaging(0.975) TCGA-63-A5MT-01 14 104219467 104219469 AAA - PPP1R13B In_Frame_Del p.L233del 0.16 TCGA-63-A5MT-01 14 106573529 106573529 A T IGHV3-11 Missense_Mutation p.C19S 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.51) TCGA-63-A5MT-01 14 107282837 107282837 G A IGHV7-81 Silent p.I102I 0.17 TCGA-63-A5MT-01 14 20215967 20215967 C A OR4Q3 Silent p.I127I 0.05 TCGA-63-A5MT-01 14 22458994 22458994 G C TRAV16 Missense_Mutation p.S49T 0.24 tolerated(0.61) benign(0.064) TCGA-63-A5MT-01 14 53175062 53175062 G A PSMC6 Missense_Mutation p.E55K 0.12 tolerated(0.26) benign(0.007) TCGA-63-A5MT-01 14 65209720 65209721 TC - PLEKHG3 Frame_Shift_Del p.L932Ifs*2 0.15 TCGA-63-A5MT-01 14 70926194 70926194 C A ADAM21 Missense_Mutation p.P660T 0.15 deleterious(0) probably_damaging(1) TCGA-63-A5MT-01 15 20649535 20649535 C A HERC2P3 RNA 0.09 TCGA-63-A5MT-01 15 28261318 28261318 C T OCA2 Nonsense_Mutation p.W274* 0.20 TCGA-63-A5MT-01 15 31362269 31362269 C G TRPM1 Missense_Mutation p.E99Q 0.16 deleterious(0.02) probably_damaging(0.978) TCGA-63-A5MT-01 15 34113723 34113723 G T RYR3 Splice_Site p.X3639_splice 0.28 TCGA-63-A5MT-01 15 34151790 34151790 C G RYR3 Missense_Mutation p.H4719Q 0.16 probably_damaging(0.962) TCGA-63-A5MT-01 15 35045051 35045051 G C GJD2 Missense_Mutation p.F198L 0.10 tolerated(0.23) possibly_damaging(0.554) TCGA-63-A5MT-01 15 40764445 40764445 C G CHST14 Missense_Mutation p.R345G 0.17 tolerated(0.08) possibly_damaging(0.576) TCGA-63-A5MT-01 15 44853535 44853535 G A EIF3J 3'UTR 0.33 TCGA-63-A5MT-01 15 49034223 49034223 G A CEP152 Missense_Mutation p.R1304C 0.19 deleterious(0) probably_damaging(0.999) TCGA-63-A5MT-01 15 54306870 54306870 A G UNC13C Silent p.K590K 0.23 TCGA-63-A5MT-01 15 73547111 73547111 G A NEO1 Missense_Mutation p.R678Q 0.12 deleterious(0) probably_damaging(0.975) TCGA-63-A5MT-01 15 85147279 85147279 G A ZSCAN2 Missense_Mutation p.V41M 0.12 tolerated(0.11) possibly_damaging(0.467) TCGA-63-A5MT-01 16 21245149 21245149 G C ANKS4B Missense_Mutation p.D31H 0.27 deleterious(0) probably_damaging(0.999) TCGA-63-A5MT-01 16 31497527 31497527 G C SLC5A2 Missense_Mutation p.A169P 0.12 deleterious(0) probably_damaging(1) TCGA-63-A5MT-01 16 31503394 31503394 C G C16orf58 Missense_Mutation p.E415D 0.18 tolerated(1) benign(0) TCGA-63-A5MT-01 16 3779578 3779578 C T CREBBP Missense_Mutation p.A1824T 0.11 unknown(0) TCGA-63-A5MT-01 16 46998717 46998717 C G DNAJA2 Missense_Mutation p.E194Q 0.08 tolerated(0.07) benign(0.213) TCGA-63-A5MT-01 16 49559353 49559353 C T ZNF423 Silent p.P1210P 0.22 TCGA-63-A5MT-01 16 57057730 57057730 C T NLRC5 Missense_Mutation p.S130L 0.29 deleterious(0.03) benign(0.179) TCGA-63-A5MT-01 16 65345410 65345410 C A LINC00922 RNA 0.20 TCGA-63-A5MT-01 16 67663367 67663367 G A CTCF Missense_Mutation p.E590K 0.15 tolerated(0.48) benign(0.071) TCGA-63-A5MT-01 16 70557396 70557396 C T COG4 Silent p.V17V 0.09 TCGA-63-A5MT-01 16 723044 723044 A G RHOT2 Silent p.L548L 0.19 TCGA-63-A5MT-01 16 74493666 74493666 C G GLG1 Missense_Mutation p.E1020Q 0.23 tolerated(0.09) possibly_damaging(0.661) TCGA-63-A5MT-01 16 78011573 78011573 G A VAT1L Missense_Mutation p.R414Q 0.09 deleterious_low_confidence(0.01) probably_damaging(0.921) TCGA-63-A5MT-01 17 33464068 33464068 G A NLE1 Silent p.L260L 0.17 TCGA-63-A5MT-01 17 37825904 37825904 C G PNMT Silent p.L75L 0.20 TCGA-63-A5MT-01 17 60059986 60059986 G A MED13 Silent p.F1126F 0.20 TCGA-63-A5MT-01 17 72588885 72588885 C A C17orf77 Missense_Mutation p.L234I 0.21 unknown(0) TCGA-63-A5MT-01 17 7578290 7578290 C A TP53 Splice_Site p.X187_splice 0.23 TCGA-63-A5MT-01 17 76503557 76503557 T A DNAH17 Missense_Mutation p.I1519F 0.17 probably_damaging(0.98) TCGA-63-A5MT-01 18 25593766 25593766 G A CDH2 Missense_Mutation p.P94S 0.14 tolerated(0.41) benign(0.005) TCGA-63-A5MT-01 18 31537329 31537329 G A NOL4 Silent p.L463L 0.21 TCGA-63-A5MT-01 19 10224621 10224621 G C P2RY11 Missense_Mutation p.C111S 0.11 tolerated(0.07) probably_damaging(0.98) TCGA-63-A5MT-01 19 19627035 19627035 G T NDUFA13 5'UTR 0.18 TCGA-63-A5MT-01 19 20828119 20828119 G A ZNF626 Intron 0.09 TCGA-63-A5MT-01 19 23543020 23543020 G C ZNF91 Missense_Mutation p.Q921E 0.14 tolerated(0.34) possibly_damaging(0.636) TCGA-63-A5MT-01 19 35632109 35632109 G A FXYD1 Silent p.L56L 0.09 TCGA-63-A5MT-01 19 36293091 36293091 A T PRODH2 Splice_Site p.X476_splice 0.09 TCGA-63-A5MT-01 19 39328293 39328293 T C AC104534.3 Splice_Site p.X136_splice 0.09 TCGA-63-A5MT-01 19 43708329 43708329 C G PSG4 Missense_Mutation p.E47Q 0.21 deleterious(0.02) possibly_damaging(0.692) TCGA-63-A5MT-01 19 49656563 49656563 C T HRC Silent p.G619G 0.39 TCGA-63-A5MT-01 19 50167919 50167919 C A IRF3 Intron 0.29 TCGA-63-A5MT-01 19 52130442 52130442 C A SIGLEC5 Missense_Mutation p.A448S 0.28 deleterious(0.04) probably_damaging(0.954) TCGA-63-A5MT-01 19 52659047 52659047 C G ZNF836 Missense_Mutation p.R630T 0.36 tolerated(0.24) probably_damaging(0.994) TCGA-63-A5MT-01 19 55508776 55508776 C G NLRP2 Missense_Mutation p.Q991E 0.22 deleterious(0) possibly_damaging(0.615) TCGA-63-A5MT-01 19 57176297 57176297 C T ZNF835 Silent p.P90P 0.11 TCGA-63-A5MT-01 19 58600159 58600159 T C ZSCAN18 Missense_Mutation p.D206G 0.13 deleterious(0.01) benign(0.083) TCGA-63-A5MT-01 19 9869085 9869085 T C ZNF846 Missense_Mutation p.D223G 0.15 tolerated(0.14) benign(0.284) TCGA-63-A5MT-01 1 101343244 101343244 T C EXTL2 Missense_Mutation p.N74S 0.14 tolerated(0.14) benign(0.394) TCGA-63-A5MT-01 1 103404632 103404632 C T COL11A1 Missense_Mutation p.E1133K 0.07 unknown(0) TCGA-63-A5MT-01 1 11017701 11017701 G A C1orf127 Missense_Mutation p.P222L 0.20 tolerated(0.09) benign(0.344) TCGA-63-A5MT-01 1 117910967 117910967 C G MAN1A2 Missense_Mutation p.F54L 0.25 tolerated(1) benign(0.01) TCGA-63-A5MT-01 1 151315462 151315462 G C RFX5 Missense_Mutation p.L351V 0.22 tolerated_low_confidence(0.05) benign(0.025) TCGA-63-A5MT-01 1 152082933 152082933 C G TCHH Missense_Mutation p.K920N 0.35 unknown(0) TCGA-63-A5MT-01 1 152552279 152552279 C T LCE3D Missense_Mutation p.G45D 0.34 deleterious_low_confidence(0.01) unknown(0) TCGA-63-A5MT-01 1 170508691 170508691 G C GORAB Missense_Mutation p.E159D 0.15 tolerated(0.2) benign(0.027) TCGA-63-A5MT-01 1 174340189 174340189 G - RABGAP1L Frame_Shift_Del p.G514Efs*4 0.25 TCGA-63-A5MT-01 1 204091448 204091448 G C SOX13 Missense_Mutation p.M315I 0.24 tolerated(0.45) benign(0.001) TCGA-63-A5MT-01 1 204092883 204092883 C T SOX13 Silent p.I442I 0.24 TCGA-63-A5MT-01 1 20879697 20879697 G T FAM43B Silent p.L77L 0.31 TCGA-63-A5MT-01 1 222801472 222801472 G C MIA3 Missense_Mutation p.D304H 0.11 deleterious(0) probably_damaging(0.953) TCGA-63-A5MT-01 1 223943220 223943220 G C CAPN2 Missense_Mutation p.E392Q 0.07 tolerated(0.25) possibly_damaging(0.681) TCGA-63-A5MT-01 1 226125030 226125030 A G LEFTY2 3'UTR 0.39 TCGA-63-A5MT-01 1 226923296 226923296 C A ITPKB Missense_Mutation p.D622Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-63-A5MT-01 1 228295530 228295530 G C MRPL55 Missense_Mutation p.L59V 0.25 tolerated(0.51) benign(0.017) TCGA-63-A5MT-01 1 228594248 228594248 G C TRIM11 Missense_Mutation p.D5E 0.16 tolerated(1) benign(0.006) TCGA-63-A5MT-01 1 237730037 237730037 G T RYR2 Missense_Mutation p.G1129C 0.12 probably_damaging(1) TCGA-63-A5MT-01 1 237730038 237730038 G T RYR2 Missense_Mutation p.G1129V 0.12 probably_damaging(1) TCGA-63-A5MT-01 1 237777922 237777922 G T RYR2 Missense_Mutation p.G1832C 0.14 probably_damaging(1) TCGA-63-A5MT-01 1 241752125 241752125 A G KMO Missense_Mutation p.Y364C 0.10 deleterious(0) probably_damaging(0.999) TCGA-63-A5MT-01 1 243291582 243291582 C A CEP170 Missense_Mutation p.Q1478H 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-63-A5MT-01 1 248129283 248129283 G C OR2AK2 Missense_Mutation p.S217T 0.36 tolerated(0.22) benign(0.26) TCGA-63-A5MT-01 1 26878169 26878169 G T RPS6KA1 Silent p.L150L 0.35 TCGA-63-A5MT-01 1 26878170 26878170 G T RPS6KA1 Missense_Mutation p.D151Y 0.36 deleterious(0) probably_damaging(0.997) TCGA-63-A5MT-01 1 36026496 36026497 - C NCDN Frame_Shift_Ins p.T251Dfs*6 0.16 TCGA-63-A5MT-01 1 40919886 40919886 C G ZFP69B Missense_Mutation p.Q47E 0.18 tolerated(0.12) benign(0.001) TCGA-63-A5MT-01 1 43788323 43788323 C A TIE1 Missense_Mutation p.A1116D 0.08 deleterious(0) benign(0.19) TCGA-63-A5MT-01 1 45363102 45363102 C T EIF2B3 Missense_Mutation p.R194H 0.18 tolerated(1) benign(0) TCGA-63-A5MT-01 1 65130258 65130258 G C CACHD1 Silent p.L673L 0.14 TCGA-63-A5MT-01 1 79404930 79404930 T C ELTD1 Silent p.A113A 0.19 TCGA-63-A5MT-01 1 89848265 89848265 G T GBP6 Nonsense_Mutation p.E399* 0.16 TCGA-63-A5MT-01 20 18295911 18295911 G A ZNF133 Nonsense_Mutation p.W138* 0.17 TCGA-63-A5MT-01 21 32638853 32638853 C G TIAM1 Missense_Mutation p.G146R 0.05 tolerated_low_confidence(0.08) benign(0.001) TCGA-63-A5MT-01 21 46640879 46640879 C T ADARB1 Missense_Mutation p.R666C 0.19 deleterious(0) probably_damaging(0.998) TCGA-63-A5MT-01 22 16449783 16449783 C A OR11H1 Missense_Mutation p.V8F 0.17 tolerated_low_confidence(0.42) benign(0.003) TCGA-63-A5MT-01 22 17280759 17280759 T C XKR3 Missense_Mutation p.K164R 0.04 tolerated(0.06) possibly_damaging(0.874) TCGA-63-A5MT-01 22 31337528 31337528 G A MORC2 Missense_Mutation p.S177L 0.09 deleterious(0) probably_damaging(0.999) TCGA-63-A5MT-01 22 32211139 32211139 C G DEPDC5 Missense_Mutation p.P536R 0.18 deleterious(0) probably_damaging(0.999) TCGA-63-A5MT-01 22 37962594 37962594 A T CDC42EP1 Missense_Mutation p.S80C 0.23 deleterious(0.01) probably_damaging(0.976) TCGA-63-A5MT-01 22 39477048 39477048 G C APOBEC3G Missense_Mutation p.W94C 0.15 deleterious(0) probably_damaging(0.998) TCGA-63-A5MT-01 22 40711509 40711509 C T TNRC6B Missense_Mutation p.S1634L 0.08 deleterious(0) possibly_damaging(0.793) TCGA-63-A5MT-01 2 112896185 112896185 G T FBLN7 5'UTR 0.21 TCGA-63-A5MT-01 2 118704387 118704387 C A CCDC93 Missense_Mutation p.K432N 0.14 tolerated(0.24) benign(0.104) TCGA-63-A5MT-01 2 128393436 128393436 T C MYO7B Missense_Mutation p.V1961A 0.27 tolerated(0.06) possibly_damaging(0.454) TCGA-63-A5MT-01 2 131096652 131096652 G C CCDC115 3'UTR 0.24 TCGA-63-A5MT-01 2 136548367 136548367 G C LCT Missense_Mutation p.I1732M 0.19 tolerated(0.05) possibly_damaging(0.574) TCGA-63-A5MT-01 2 141806752 141806752 C T LRP1B Missense_Mutation p.R531H 0.17 possibly_damaging(0.522) TCGA-63-A5MT-01 2 145187364 145187364 C T ZEB2 Silent p.E101E 0.20 TCGA-63-A5MT-01 2 152425857 152425857 C A NEB Missense_Mutation p.L5820F 0.12 probably_damaging(0.986) TCGA-63-A5MT-01 2 15468367 15468367 G A NBAS Missense_Mutation p.H1473Y 0.14 tolerated(0.05) benign(0.078) TCGA-63-A5MT-01 2 160807922 160807922 G A PLA2R1 Missense_Mutation p.H1157Y 0.13 deleterious(0) possibly_damaging(0.901) TCGA-63-A5MT-01 2 170038760 170038760 G A LRP2 Silent p.R3305R 0.16 TCGA-63-A5MT-01 2 179414038 179414038 T C TTN Missense_Mutation p.K30772R 0.16 TCGA-63-A5MT-01 2 179414593 179414593 G T TTN Missense_Mutation p.T30619K 0.24 TCGA-63-A5MT-01 2 179444686 179444686 C G TTN Missense_Mutation p.R22443P 0.12 TCGA-63-A5MT-01 2 182787055 182787055 G A SSFA2 Silent p.G1197G 0.17 TCGA-63-A5MT-01 2 190732632 190732632 G A PMS1 Missense_Mutation p.G817D 0.16 deleterious(0) probably_damaging(1) TCGA-63-A5MT-01 2 193044329 193044329 A G TMEFF2 Intron 0.09 TCGA-63-A5MT-01 2 202005008 202005008 G A CFLAR Intron 0.09 TCGA-63-A5MT-01 2 20463084 20463084 T A PUM2 Missense_Mutation p.R699W 0.23 tolerated(0.11) possibly_damaging(0.818) TCGA-63-A5MT-01 2 21236107 21236107 C G APOB Missense_Mutation p.D1381H 0.19 possibly_damaging(0.831) TCGA-63-A5MT-01 2 219498395 219498395 G T PLCD4 Missense_Mutation p.R506L 0.20 tolerated(0.27) benign(0.138) TCGA-63-A5MT-01 2 222321331 222321331 A T EPHA4 Splice_Site p.X535_splice 0.24 TCGA-63-A5MT-01 2 26677631 26677631 C G DRC1 Missense_Mutation p.A679G 0.17 deleterious(0.05) benign(0.422) TCGA-63-A5MT-01 2 42991149 42991149 G A OXER1 Silent p.L57L 0.16 TCGA-63-A5MT-01 2 61468906 61468906 C G USP34 Missense_Mutation p.E2226Q 0.16 deleterious(0) probably_damaging(0.991) TCGA-63-A5MT-01 2 71577285 71577285 G T ZNF638 Missense_Mutation p.A401S 0.11 tolerated(0.12) possibly_damaging(0.459) TCGA-63-A5MT-01 2 73800355 73800355 C G ALMS1 Missense_Mutation p.T3783S 0.29 probably_damaging(0.999) TCGA-63-A5MT-01 2 74690156 74690156 T C MOGS Intron 0.19 TCGA-63-A5MT-01 2 80529548 80529548 G A LRRTM1 Missense_Mutation p.T466M 0.31 tolerated(0.38) possibly_damaging(0.548) TCGA-63-A5MT-01 2 95954316 95954316 G A PROM2 Missense_Mutation p.R807H 0.17 tolerated(0.08) benign(0.196) TCGA-63-A5MT-01 3 109047890 109047890 G A DPPA4 Missense_Mutation p.T242I 0.16 deleterious(0.04) benign(0.076) TCGA-63-A5MT-01 3 113085062 113085062 C A WDR52 Missense_Mutation p.D847Y 0.17 tolerated(0.1) benign(0.003) TCGA-63-A5MT-01 3 119634926 119634926 A C GSK3B Silent p.P191P 0.18 TCGA-63-A5MT-01 3 124456958 124456958 A G UMPS Missense_Mutation p.D285G 0.21 deleterious(0) probably_damaging(1) TCGA-63-A5MT-01 3 138218992 138218992 C G CEP70 Missense_Mutation p.E538Q 0.15 tolerated(0.23) benign(0.077) TCGA-63-A5MT-01 3 138669374 138669374 G A C3orf72 Missense_Mutation p.R163Q 0.27 tolerated_low_confidence(0.26) benign(0) TCGA-63-A5MT-01 3 161221325 161221325 G T OTOL1 Silent p.S343S 0.12 TCGA-63-A5MT-01 3 164730773 164730773 C A SI Missense_Mutation p.V1353F 0.19 deleterious(0.01) probably_damaging(0.975) TCGA-63-A5MT-01 3 164773072 164773072 G C SI Nonsense_Mutation p.Y474* 0.16 TCGA-63-A5MT-01 3 164783054 164783054 C A SI Missense_Mutation p.G268C 0.11 tolerated(0.08) possibly_damaging(0.616) TCGA-63-A5MT-01 3 170002260 170002260 C A PRKCI Missense_Mutation p.A360E 0.11 deleterious(0) benign(0.299) TCGA-63-A5MT-01 3 175165126 175165126 T C NAALADL2 Silent p.N400N 0.25 TCGA-63-A5MT-01 3 183854556 183854556 C T EIF2B5 Intron 0.24 TCGA-63-A5MT-01 3 186369081 186369081 T C FETUB Silent p.F257F 0.19 TCGA-63-A5MT-01 3 186395394 186395394 C A HRG Missense_Mutation p.P434T 0.23 deleterious_low_confidence(0.01) benign(0.037) TCGA-63-A5MT-01 3 193068941 193068941 A G ATP13A5 Missense_Mutation p.L219P 0.16 deleterious(0.03) possibly_damaging(0.897) TCGA-63-A5MT-01 3 47162757 47162757 T C SETD2 Silent p.K1123K 0.29 TCGA-63-A5MT-01 3 49395398 49395398 G T GPX1 Intron 0.23 TCGA-63-A5MT-01 3 52777458 52777458 C T NEK4 Silent p.A638A 0.24 TCGA-63-A5MT-01 4 111781746 111781746 G C MIR297 RNA 0.17 TCGA-63-A5MT-01 4 155156816 155156816 G A DCHS2 Silent p.I2541I 0.08 TCGA-63-A5MT-01 4 164393716 164393716 C A TKTL2 Missense_Mutation p.G391C 0.13 tolerated(0.09) benign(0.001) TCGA-63-A5MT-01 4 39462562 39462562 A G LIAS Silent p.L66L 0.19 TCGA-63-A5MT-01 4 42895517 42895517 T C GRXCR1 Silent p.D78D 0.08 TCGA-63-A5MT-01 4 66218822 66218822 C G EPHA5 Splice_Site p.X746_splice 0.09 TCGA-63-A5MT-01 4 91230567 91230567 G C CCSER1 Missense_Mutation p.G378R 0.16 tolerated_low_confidence(0.4) benign(0.261) TCGA-63-A5MT-01 5 13919409 13919409 C G DNAH5 Missense_Mutation p.R284P 0.25 possibly_damaging(0.767) TCGA-63-A5MT-01 5 140167407 140167407 A G PCDHA1 Missense_Mutation p.H511R 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.746) TCGA-63-A5MT-01 5 140698714 140698714 T A TAF7 Nonsense_Mutation p.K300* 0.18 TCGA-63-A5MT-01 5 140740292 140740292 A G PCDHGB2 Missense_Mutation p.K197R 0.31 deleterious(0.02) benign(0.178) TCGA-63-A5MT-01 5 145393610 145393610 A T SH3RF2 Missense_Mutation p.S349C 0.21 deleterious(0.01) possibly_damaging(0.873) TCGA-63-A5MT-01 5 156456735 156456735 C A HAVCR1 3'UTR 0.37 TCGA-63-A5MT-01 5 156479473 156479473 G T HAVCR1 Missense_Mutation p.P191Q 0.21 tolerated(0.63) unknown(0) TCGA-63-A5MT-01 5 16067735 16067735 G A MARCH11 Missense_Mutation p.R352W 0.09 deleterious(0) probably_damaging(0.937) TCGA-63-A5MT-01 5 162939161 162939161 T C MAT2B Silent p.L73L 0.22 TCGA-63-A5MT-01 5 178987146 178987146 C T RUFY1 Missense_Mutation p.P144L 0.32 deleterious(0) probably_damaging(0.999) TCGA-63-A5MT-01 5 45262744 45262744 G A HCN1 Missense_Mutation p.S651L 0.13 tolerated(0.32) benign(0.003) TCGA-63-A5MT-01 5 86628380 86628380 C G RASA1 Nonsense_Mutation p.S250* 0.20 TCGA-63-A5MT-01 5 86628410 86628410 C G RASA1 Missense_Mutation p.S260C 0.21 deleterious(0.03) possibly_damaging(0.72) TCGA-63-A5MT-01 6 100838525 100838525 C T SIM1 Silent p.L671L 0.15 TCGA-63-A5MT-01 6 106553089 106553089 C A PRDM1 Missense_Mutation p.P352T 0.24 deleterious(0) probably_damaging(0.979) TCGA-63-A5MT-01 6 10728914 10728914 T C TMEM14C Missense_Mutation p.Y81H 0.41 tolerated(0.17) benign(0.104) TCGA-63-A5MT-01 6 109175661 109175661 C G ARMC2 Nonsense_Mutation p.S64* 0.12 TCGA-63-A5MT-01 6 111697079 111697079 G T REV3L Missense_Mutation p.P827T 0.13 tolerated(0.1) benign(0.001) TCGA-63-A5MT-01 6 112466123 112466123 G T LAMA4 Missense_Mutation p.T789N 0.37 tolerated(0.46) possibly_damaging(0.794) TCGA-63-A5MT-01 6 112469437 112469437 G T LAMA4 Missense_Mutation p.L759I 0.11 tolerated(0.07) benign(0.042) TCGA-63-A5MT-01 6 112493895 112493895 T C LAMA4 Missense_Mutation p.E490G 0.30 tolerated(0.15) possibly_damaging(0.639) TCGA-63-A5MT-01 6 114266603 114266603 A G HDAC2 Silent p.F338F 0.16 TCGA-63-A5MT-01 6 116879088 116879088 A G FAM26D Missense_Mutation p.Y77C 0.13 deleterious(0.03) probably_damaging(0.999) TCGA-63-A5MT-01 6 117900152 117900152 C T GOPC Missense_Mutation p.D121N 0.09 tolerated(0.68) benign(0.001) TCGA-63-A5MT-01 6 123332293 123332293 G A CLVS2 Missense_Mutation p.E185K 0.18 deleterious(0.01) benign(0.417) TCGA-63-A5MT-01 6 127517037 127517037 G A RSPO3 Missense_Mutation p.S235N 0.12 tolerated(0.78) benign(0.001) TCGA-63-A5MT-01 6 129513961 129513961 A G LAMA2 Missense_Mutation p.Y582C 0.39 deleterious(0) possibly_damaging(0.886) TCGA-63-A5MT-01 6 129573346 129573346 C A LAMA2 Missense_Mutation p.P668T 0.07 tolerated(0.11) benign(0.41) TCGA-63-A5MT-01 6 129714273 129714273 G A LAMA2 Missense_Mutation p.R1773Q 0.20 tolerated(0.4) benign(0.015) TCGA-63-A5MT-01 6 132271681 132271681 T C CTGF Missense_Mutation p.K98E 0.53 tolerated(0.4) benign(0.015) TCGA-63-A5MT-01 6 132618279 132618279 A T MOXD1 3'UTR 0.15 TCGA-63-A5MT-01 6 133094108 133094108 C T SLC18B1 Intron 0.22 TCGA-63-A5MT-01 6 144144952 144144952 G A PHACTR2 3'UTR 0.19 TCGA-63-A5MT-01 6 146865058 146865058 A G RAB32 Silent p.P17P 0.26 TCGA-63-A5MT-01 6 147124043 147124043 A G ADGB Intron 0.33 TCGA-63-A5MT-01 6 151687311 151687311 C T ZBTB2 Missense_Mutation p.S297N 0.18 tolerated(0.8) benign(0) TCGA-63-A5MT-01 6 169632178 169632178 C A THBS2 Missense_Mutation p.G683V 0.15 deleterious(0) probably_damaging(1) TCGA-63-A5MT-01 6 26507009 26507009 A G BTN1A1 Missense_Mutation p.R270G 0.16 deleterious(0.03) possibly_damaging(0.529) TCGA-63-A5MT-01 6 27115210 27115210 C A HIST1H2AH Silent p.V101V 0.16 TCGA-63-A5MT-01 6 31911428 31911428 C G CFB Silent p.P372P 0.24 TCGA-63-A5MT-01 6 32020531 32020531 C G TNXB Missense_Mutation p.E3009Q 0.14 possibly_damaging(0.859) TCGA-63-A5MT-01 6 39073331 39073331 C T SAYSD1 Silent p.E143E 0.09 TCGA-63-A5MT-01 6 69349088 69349088 G T BAI3 Missense_Mutation p.W174L 0.16 deleterious(0) probably_damaging(0.932) TCGA-63-A5MT-01 6 69349089 69349089 G T BAI3 Missense_Mutation p.W174C 0.16 deleterious(0) probably_damaging(0.985) TCGA-63-A5MT-01 6 73951219 73951219 C G KHDC1 3'UTR 0.26 TCGA-63-A5MT-01 6 82459990 82459990 T C FAM46A Missense_Mutation p.M251V 0.33 deleterious(0.02) probably_damaging(0.997) TCGA-63-A5MT-01 6 90372609 90372609 C T MDN1 Missense_Mutation p.D4772N 0.12 possibly_damaging(0.804) TCGA-63-A5MT-01 7 100676916 100676916 C G MUC17 Nonsense_Mutation p.S740* 0.17 TCGA-63-A5MT-01 7 100681165 100681165 T C MUC17 Silent p.Y2156Y 0.20 TCGA-63-A5MT-01 7 149502592 149502592 G A SSPO RNA 0.11 TCGA-63-A5MT-01 7 149515810 149515810 G A SSPO RNA 0.24 TCGA-63-A5MT-01 7 150417778 150417778 A G GIMAP1 Missense_Mutation p.Q229R 0.27 tolerated(0.46) benign(0.006) TCGA-63-A5MT-01 7 1579969 1579969 C G MAFK Silent p.T143T 0.17 TCGA-63-A5MT-01 7 30491667 30491667 C G NOD1 Missense_Mutation p.G456R 0.31 tolerated(0.35) possibly_damaging(0.665) TCGA-63-A5MT-01 7 32619862 32619862 G C AVL9 Missense_Mutation p.D574H 0.21 deleterious(0) probably_damaging(0.969) TCGA-63-A5MT-01 7 48375037 48375037 A G ABCA13 Missense_Mutation p.I3340V 0.21 benign(0.004) TCGA-63-A5MT-01 7 4917465 4917465 C A RADIL Silent p.L102L 0.23 TCGA-63-A5MT-01 7 8475240 8475240 G A NXPH1 5'UTR 0.25 TCGA-63-A5MT-01 7 87178796 87178796 C G ABCB1 Missense_Mutation p.L531F 0.14 deleterious(0) probably_damaging(0.982) TCGA-63-A5MT-01 7 92732155 92732155 G A SAMD9 Nonsense_Mutation p.Q1086* 0.18 TCGA-63-A5MT-01 7 99129067 99129067 C T ZKSCAN5 Missense_Mutation p.T572I 0.30 deleterious(0.04) probably_damaging(0.999) TCGA-63-A5MT-01 8 105025727 105025727 G A RIMS2 Silent p.R1034R 0.12 TCGA-63-A5MT-01 8 133047040 133047040 T G OC90 Missense_Mutation p.T241P 0.15 deleterious(0.04) benign(0.103) TCGA-63-A5MT-01 8 139164901 139164901 G T FAM135B Missense_Mutation p.S606Y 0.15 tolerated(0.06) benign(0.002) TCGA-63-A5MT-01 8 80956418 80956418 T C TPD52 Intron 0.72 TCGA-63-A5MT-01 8 87568526 87568526 G C CPNE3 Missense_Mutation p.R484T 0.13 deleterious(0) probably_damaging(0.999) TCGA-63-A5MT-01 8 99761611 99761611 C T STK3 Missense_Mutation p.V110I 0.13 tolerated(0.39) benign(0.188) TCGA-63-A5MT-01 9 101235554 101235554 C T GABBR2 Silent p.E291E 0.15 TCGA-63-A5MT-01 9 101904939 101904939 G A TGFBR1 Silent p.T309T 0.11 TCGA-63-A5MT-01 9 116171250 116171250 C T POLE3 Silent p.E95E 0.33 TCGA-63-A5MT-01 9 136532015 136532015 C A SARDH Intron 0.27 TCGA-63-A5MT-01 9 139405696 139405696 G - NOTCH1 Frame_Shift_Del p.P832Rfs*44 0.41 TCGA-63-A5MT-01 9 140450068 140450068 G C DPH7 Missense_Mutation p.H328D 0.09 deleterious(0.01) benign(0.022) TCGA-63-A5MT-01 9 79322053 79322053 C G PRUNE2 Missense_Mutation p.E1713Q 0.25 tolerated(0.11) benign(0.408) TCGA-63-A5MT-01 9 88937360 88937360 G A ZCCHC6 Nonsense_Mutation p.R970* 0.14 TCGA-63-A5MT-01 9 916861 916861 C G DMRT1 Missense_Mutation p.F307L 0.21 tolerated(0.2) benign(0.001) TCGA-63-A5MT-01 X 123699230 123699230 G A TENM1 Missense_Mutation p.T753I 0.26 deleterious(0) probably_damaging(0.979) TCGA-63-A5MT-01 X 130408611 130408611 G A IGSF1 Missense_Mutation p.S1243L 0.18 deleterious(0) probably_damaging(0.999) TCGA-63-A5MT-01 X 140984495 140984495 G A MAGEC3 Intron 0.57 TCGA-63-A5MT-01 X 153171303 153171303 G A AVPR2 Missense_Mutation p.V115M 0.06 deleterious(0) probably_damaging(0.981) TCGA-63-A5MT-01 X 200834 200834 G T PLCXD1 Intron 0.15 TCGA-63-A5MT-01 X 30254475 30254475 A G MAGEB3 Missense_Mutation p.H145R 0.49 deleterious(0) benign(0.166) TCGA-63-A5MT-01 X 3239965 3239965 C - MXRA5 Frame_Shift_Del p.G1254Dfs*31 0.36 TCGA-63-A5MT-01 X 44918712 44918712 G T KDM6A Splice_Site p.X398_splice 0.23 TCGA-63-A5MT-01 X 48839690 48839690 C A GRIPAP1 Missense_Mutation p.D479Y 0.25 benign(0.407) TCGA-63-A5MT-01 X 7252109 7252109 A G STS Missense_Mutation p.N447D 0.28 deleterious(0.02) probably_damaging(1) TCGA-63-A5MT-01 X 77913044 77913044 G T ZCCHC5 Missense_Mutation p.Q292K 0.43 tolerated(0.07) benign(0.297) TCGA-63-A5MU-01 10 118030602 118030602 G T GFRA1 Missense_Mutation p.S22R 0.47 tolerated(0.22) possibly_damaging(0.525) TCGA-63-A5MU-01 10 134622116 134622116 G T TTC40 Missense_Mutation p.P2653T 0.73 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-63-A5MU-01 10 13698964 13698964 C A FRMD4A Silent p.A875A 0.21 TCGA-63-A5MU-01 10 17201212 17201212 G C TRDMT1 Nonsense_Mutation p.S159* 0.06 TCGA-63-A5MU-01 10 17887186 17887186 G A MRC1L1 Intron 0.78 TCGA-63-A5MU-01 10 31138713 31138713 C T ZNF438 Silent p.V207V 0.28 TCGA-63-A5MU-01 10 42928803 42928803 C A CCNYL2 Splice_Site 0.26 TCGA-63-A5MU-01 10 43089515 43089515 C T ZNF33B Missense_Mutation p.G295R 0.22 tolerated(0.57) possibly_damaging(0.585) TCGA-63-A5MU-01 10 45486408 45486408 T G RASSF4 Nonsense_Mutation p.L233* 0.29 TCGA-63-A5MU-01 10 50574330 50574330 G T DRGX Missense_Mutation p.T213N 0.63 deleterious(0) benign(0.06) TCGA-63-A5MU-01 10 55582459 55582459 G T PCDH15 Missense_Mutation p.T1678N 0.61 tolerated_low_confidence(0.16) benign(0.005) TCGA-63-A5MU-01 10 6268236 6268236 C G PFKFB3 Missense_Mutation p.R475G 0.18 probably_damaging(0.998) TCGA-63-A5MU-01 10 63759913 63759913 C G ARID5B Missense_Mutation p.S189W 0.19 deleterious(0) probably_damaging(0.984) TCGA-63-A5MU-01 10 72299368 72299368 C T PALD1 Silent p.S586S 0.30 TCGA-63-A5MU-01 11 122726409 122726409 C - CRTAM Frame_Shift_Del p.T166Sfs*19 0.47 TCGA-63-A5MU-01 11 51516169 51516169 C A OR4C46 Silent p.I296I 0.86 TCGA-63-A5MU-01 11 56000060 56000060 G T OR5T2 Missense_Mutation p.A201D 0.87 tolerated(0.1) probably_damaging(0.952) TCGA-63-A5MU-01 11 56468272 56468272 A T OR9G1 Missense_Mutation p.I137L 0.50 tolerated(0.5) benign(0.002) TCGA-63-A5MU-01 11 58722777 58722777 A G GLYATL1 Missense_Mutation p.K179E 0.88 tolerated(0.62) benign(0.259) TCGA-63-A5MU-01 11 71932579 71932579 G T FOLR2 Missense_Mutation p.A181S 0.92 tolerated(0.35) benign(0.081) TCGA-63-A5MU-01 11 73008628 73008628 C T P2RY6 3'UTR 0.84 TCGA-63-A5MU-01 11 75113618 75113618 A T RPS3 Intron 0.78 TCGA-63-A5MU-01 11 76257192 76257192 G A C11orf30 Missense_Mutation p.E1209K 0.26 tolerated_low_confidence(0.13) benign(0.206) TCGA-63-A5MU-01 11 811816 811816 C G RPLP2 Intron 0.07 TCGA-63-A5MU-01 12 10750773 10750773 T G KLRAP1 RNA 0.25 TCGA-63-A5MU-01 12 109522869 109522869 C T USP30 Missense_Mutation p.P427L 0.48 tolerated(0.57) possibly_damaging(0.507) TCGA-63-A5MU-01 12 112843040 112843040 T C RPL6 Silent p.K285K 0.28 TCGA-63-A5MU-01 12 23728607 23728607 C A SOX5 Missense_Mutation p.V444F 0.06 tolerated(0.77) benign(0.145) TCGA-63-A5MU-01 12 32134840 32134840 G A KIAA1551 Silent p.R317R 0.55 TCGA-63-A5MU-01 12 3789496 3789496 G A EFCAB4B Missense_Mutation p.P83L 0.21 deleterious(0) probably_damaging(0.98) TCGA-63-A5MU-01 12 40158634 40158634 G A SLC2A13 Missense_Mutation p.T491I 0.26 tolerated(0.18) benign(0.021) TCGA-63-A5MU-01 12 40258565 40258565 T A SLC2A13 Missense_Mutation p.S440C 0.27 deleterious(0.01) possibly_damaging(0.76) TCGA-63-A5MU-01 12 48736886 48736886 C A ZNF641 Missense_Mutation p.G396V 0.52 deleterious(0) probably_damaging(1) TCGA-63-A5MU-01 12 49440443 49440443 C A KMT2D Missense_Mutation p.C1456F 0.53 probably_damaging(0.999) TCGA-63-A5MU-01 12 52788959 52788959 C A KRT82 Missense_Mutation p.A448S 0.49 tolerated(0.12) benign(0.06) TCGA-63-A5MU-01 12 52911901 52911902 - A KRT5 Frame_Shift_Ins p.V273Cfs*22 0.19 TCGA-63-A5MU-01 12 56649621 56649621 C G ANKRD52 Missense_Mutation p.D137H 0.17 deleterious(0) probably_damaging(1) TCGA-63-A5MU-01 12 660099 660099 C T B4GALNT3 Missense_Mutation p.P337S 0.55 tolerated(0.76) benign(0.009) TCGA-63-A5MU-01 12 7528157 7528157 G C CD163L1 Silent p.S907S 0.38 TCGA-63-A5MU-01 12 85439887 85439887 C T LRRIQ1 Silent p.D142D 0.24 TCGA-63-A5MU-01 13 32365971 32365971 T A RXFP2 Missense_Mutation p.Y392N 0.76 deleterious(0) probably_damaging(0.968) TCGA-63-A5MU-01 13 50306565 50306565 C T KPNA3 Missense_Mutation p.D109N 0.29 tolerated(0.38) probably_damaging(0.976) TCGA-63-A5MU-01 13 50502138 50502138 T A SPRYD7 Nonsense_Mutation p.R103* 0.67 TCGA-63-A5MU-01 13 97639358 97639358 G A OXGR1 Missense_Mutation p.T219I 0.43 tolerated(0.59) benign(0.021) TCGA-63-A5MU-01 13 97639369 97639369 T A OXGR1 Silent p.T215T 0.45 TCGA-63-A5MU-01 14 19553776 19553776 G T POTEG Missense_Mutation p.W120C 0.08 deleterious(0.01) probably_damaging(0.949) TCGA-63-A5MU-01 14 20822281 20822281 C G PARP2 Missense_Mutation p.S226C 0.24 tolerated(0.07) benign(0.353) TCGA-63-A5MU-01 14 23370915 23370919 GAGGC - RBM23 3'UTR 0.16 TCGA-63-A5MU-01 14 45633688 45633688 C G FANCM Missense_Mutation p.L570V 0.25 deleterious(0.02) probably_damaging(0.963) TCGA-63-A5MU-01 14 58033196 58033196 C T SLC35F4 Missense_Mutation p.A441T 0.29 deleterious(0) probably_damaging(0.998) TCGA-63-A5MU-01 14 60074068 60074068 G A RTN1 Silent p.I636I 0.59 TCGA-63-A5MU-01 14 69799881 69799881 C A GALNT16 Silent p.P286P 0.69 TCGA-63-A5MU-01 14 75140740 75140740 T A AREL1 Silent p.T385T 0.36 TCGA-63-A5MU-01 14 76542976 76542976 C T IFT43 Silent p.N84N 0.51 TCGA-63-A5MU-01 14 94158127 94158127 C T UNC79 Silent p.H2297H 0.05 TCGA-63-A5MU-01 15 25468322 25468322 C T SNORD115-27 3'Flank 0.39 TCGA-63-A5MU-01 15 33926916 33926916 C A RYR3 Missense_Mutation p.P1053T 0.64 possibly_damaging(0.907) TCGA-63-A5MU-01 15 33926917 33926917 C A RYR3 Missense_Mutation p.P1053Q 0.64 benign(0.364) TCGA-63-A5MU-01 15 35219283 35219283 T A AQR Silent p.A357A 0.12 TCGA-63-A5MU-01 15 40565791 40565791 A C PAK6 Missense_Mutation p.K553Q 0.68 tolerated(0.17) possibly_damaging(0.863) TCGA-63-A5MU-01 15 78485898 78485898 C T ACSBG1 Missense_Mutation p.A205T 0.25 tolerated(0.07) benign(0.376) TCGA-63-A5MU-01 15 85438320 85438320 C T SLC28A1 Nonsense_Mutation p.Q143* 0.24 TCGA-63-A5MU-01 16 18826877 18826877 G C SMG1 Missense_Mutation p.Q3467E 0.07 tolerated(0.62) probably_damaging(0.93) TCGA-63-A5MU-01 16 24268158 24268158 T A CACNG3 Missense_Mutation p.V28E 0.23 deleterious(0) probably_damaging(1) TCGA-63-A5MU-01 16 30410111 30410111 C A ZNF48 Missense_Mutation p.L514M 0.30 tolerated(0.08) possibly_damaging(0.86) TCGA-63-A5MU-01 16 30535850 30535850 C T ZNF768 Silent p.A537A 0.72 TCGA-63-A5MU-01 16 47627465 47627465 G A PHKB Missense_Mutation p.D375N 0.38 deleterious(0.01) probably_damaging(0.995) TCGA-63-A5MU-01 16 48247415 48247415 A G ABCC11 Missense_Mutation p.F432S 0.32 tolerated(0.46) benign(0.071) TCGA-63-A5MU-01 16 50810176 50810176 C T CYLD Missense_Mutation p.P337S 0.53 tolerated(0.18) benign(0.016) TCGA-63-A5MU-01 16 53720433 53720433 C T RPGRIP1L Missense_Mutation p.E230K 0.21 deleterious(0) benign(0.234) TCGA-63-A5MU-01 16 53726240 53726240 C T RPGRIP1L Silent p.K89K 0.20 TCGA-63-A5MU-01 17 27022543 27022543 G A SUPT6H Missense_Mutation p.M1316I 0.10 tolerated(0.34) benign(0.001) TCGA-63-A5MU-01 17 27023874 27023874 G A SUPT6H Missense_Mutation p.R1328K 0.16 deleterious(0) probably_damaging(0.999) TCGA-63-A5MU-01 17 42334883 42334883 G T SLC4A1 Silent p.I487I 0.20 TCGA-63-A5MU-01 17 48819054 48819054 C G LUC7L3 Missense_Mutation p.Q130E 0.17 tolerated(0.45) unknown(0) TCGA-63-A5MU-01 17 58292024 58292024 C - USP32 Frame_Shift_Del p.R660Pfs*31 0.32 TCGA-63-A5MU-01 17 67515498 67515498 G C MAP2K6 Silent p.L97L 0.05 TCGA-63-A5MU-01 17 7483875 7483875 A G CD68 Missense_Mutation p.Y220C 0.88 tolerated(0.18) benign(0.037) TCGA-63-A5MU-01 17 7578461 7578461 C A TP53 Missense_Mutation p.V157F 0.79 deleterious(0) probably_damaging(0.997) TCGA-63-A5MU-01 17 7623077 7623077 C T DNAH2 Nonsense_Mutation p.Q9* 0.78 TCGA-63-A5MU-01 17 80196738 80196738 G A SLC16A3 Silent p.K428K 0.24 TCGA-63-A5MU-01 18 21153529 21153529 G A NPC1 Nonsense_Mutation p.Q23* 0.47 TCGA-63-A5MU-01 19 1043408 1043408 C T ABCA7 Missense_Mutation p.P289L 0.28 deleterious(0) probably_damaging(1) TCGA-63-A5MU-01 19 14000787 14000787 A T C19orf57 Silent p.P294P 0.50 TCGA-63-A5MU-01 19 15355523 15355523 T G BRD4 Missense_Mutation p.K737Q 0.26 benign(0.403) TCGA-63-A5MU-01 19 21239720 21239720 G C ZNF430 Missense_Mutation p.K202N 0.24 tolerated(0.13) benign(0.125) TCGA-63-A5MU-01 19 36352734 36352734 G T KIRREL2 Nonsense_Mutation p.E440* 0.33 TCGA-63-A5MU-01 19 3740605 3740605 G A TJP3 Missense_Mutation p.G572S 0.21 tolerated(0.14) benign(0.142) TCGA-63-A5MU-01 19 39591949 39591949 C T PAPL Missense_Mutation p.A332V 0.51 deleterious(0) probably_damaging(0.999) TCGA-63-A5MU-01 19 4290602 4290602 T A SHD Missense_Mutation p.L332Q 0.32 tolerated(0.08) possibly_damaging(0.893) TCGA-63-A5MU-01 19 42946985 42946985 C T CXCL17 5'UTR 0.54 TCGA-63-A5MU-01 19 46522860 46522860 C T PGLYRP1 Nonsense_Mutation p.W111* 0.20 TCGA-63-A5MU-01 19 49376947 49376947 G A PPP1R15A Missense_Mutation p.G153S 0.52 tolerated(0.1) benign(0.414) TCGA-63-A5MU-01 19 53431826 53431826 T A ZNF321P 3'UTR 0.54 TCGA-63-A5MU-01 19 54395021 54395021 C T PRKCG Missense_Mutation p.T208M 0.60 deleterious(0.03) possibly_damaging(0.68) TCGA-63-A5MU-01 19 54783204 54783204 G T LILRB2 Silent p.V218V 0.47 TCGA-63-A5MU-01 19 55106731 55106731 T C LILRA1 Silent p.H175H 0.50 TCGA-63-A5MU-01 19 57646908 57646908 C A ZIM3 Missense_Mutation p.C266F 0.22 tolerated(0.05) benign(0.118) TCGA-63-A5MU-01 19 57744957 57744957 G A AURKC Missense_Mutation p.V189M 0.24 deleterious(0) probably_damaging(0.995) TCGA-63-A5MU-01 1 107691277 107691277 A G NTNG1 Missense_Mutation p.Q21R 0.60 tolerated(0.09) probably_damaging(0.989) TCGA-63-A5MU-01 1 110302335 110302335 C T EPS8L3 Missense_Mutation p.D74N 0.10 deleterious(0.04) benign(0.323) TCGA-63-A5MU-01 1 14107336 14107336 G A PRDM2 Missense_Mutation p.A1016T 0.06 unknown(0) TCGA-63-A5MU-01 1 155691356 155691356 C T DAP3 Nonsense_Mutation p.Q73* 0.08 TCGA-63-A5MU-01 1 156873743 156873745 CTT - PEAR1 In_Frame_Del p.L11del 0.18 TCGA-63-A5MU-01 1 158390333 158390333 G T OR10K2 Silent p.G108G 0.71 TCGA-63-A5MU-01 1 159505278 159505278 C G OR10J5 Missense_Mutation p.D174H 0.12 tolerated(0.32) possibly_damaging(0.537) TCGA-63-A5MU-01 1 15970067 15970067 A G DDI2 Missense_Mutation p.M271V 0.56 deleterious(0.01) benign(0.113) TCGA-63-A5MU-01 1 161519522 161519522 C T FCGR3A Nonsense_Mutation p.W38* 0.21 TCGA-63-A5MU-01 1 16767292 16767292 C T NECAP2 Silent p.V12V 0.32 TCGA-63-A5MU-01 1 16890622 16890622 C A NBPF1 Missense_Mutation p.R1079I 0.08 deleterious_low_confidence(0.03) benign(0.111) TCGA-63-A5MU-01 1 16945691 16945691 G A RP5-1182A14.5 3'Flank 0.07 TCGA-63-A5MU-01 1 16953704 16953704 C T CROCCP2 3'Flank 0.08 TCGA-63-A5MU-01 1 171621562 171621562 G A MYOC Nonsense_Mutation p.Q64* 0.29 TCGA-63-A5MU-01 1 181724392 181724392 T A CACNA1E Missense_Mutation p.V1283E 0.72 deleterious(0) benign(0.181) TCGA-63-A5MU-01 1 192128364 192128364 G T RGS18 Missense_Mutation p.R45I 0.65 deleterious(0) probably_damaging(0.99) TCGA-63-A5MU-01 1 200089970 200089970 C A NR5A2 Missense_Mutation p.A422D 0.18 tolerated(0.17) benign(0.007) TCGA-63-A5MU-01 1 200377700 200377700 T C ZNF281 Silent p.A378A 0.70 TCGA-63-A5MU-01 1 227751319 227751319 G C ZNF678 5'UTR 0.70 TCGA-63-A5MU-01 1 237774104 237774104 A T RYR2 Nonsense_Mutation p.K1576* 0.28 TCGA-63-A5MU-01 1 247978827 247978827 G C OR14A16 Missense_Mutation p.L69V 0.20 tolerated(0.08) benign(0.058) TCGA-63-A5MU-01 1 248366834 248366834 T C OR2M3 Silent p.D155D 0.16 TCGA-63-A5MU-01 1 248487333 248487333 C A OR2M7 Missense_Mutation p.D180Y 0.11 deleterious(0) probably_damaging(0.967) TCGA-63-A5MU-01 1 248570148 248570148 A G OR2T1 Missense_Mutation p.K285E 0.14 deleterious(0.01) possibly_damaging(0.902) TCGA-63-A5MU-01 1 248790139 248790139 C A OR2T11 Missense_Mutation p.Q97H 0.58 deleterious(0) probably_damaging(0.981) TCGA-63-A5MU-01 1 36181655 36181655 T G C1orf216 Missense_Mutation p.I90L 0.24 tolerated(0.22) benign(0.005) TCGA-63-A5MU-01 1 39878123 39878140 CACTTTTGGAGGATCAAG - KIAA0754 In_Frame_Del p.L594_A599del 0.58 TCGA-63-A5MU-01 1 40230295 40230295 C T BMP8B Missense_Mutation p.D290N 0.37 tolerated(0.16) benign(0.024) TCGA-63-A5MU-01 1 82409186 82409186 G A LPHN2 Missense_Mutation p.A311T 0.37 deleterious(0) probably_damaging(0.988) TCGA-63-A5MU-01 1 86249839 86249839 C G COL24A1 Missense_Mutation p.G1393A 0.32 deleterious(0) probably_damaging(0.999) TCGA-63-A5MU-01 1 92441957 92441957 G T BRDT Nonsense_Mutation p.G194* 0.50 TCGA-63-A5MU-01 20 1629747 1629748 - G SIRPG Frame_Shift_Ins p.E128* 0.18 TCGA-63-A5MU-01 20 43583820 43583820 C A TOMM34 Missense_Mutation p.R90L 0.25 deleterious(0) probably_damaging(0.987) TCGA-63-A5MU-01 20 44685070 44685070 C A SLC12A5 Missense_Mutation p.P1016T 0.22 tolerated(0.34) benign(0.011) TCGA-63-A5MU-01 20 50235555 50235555 C A ATP9A Nonsense_Mutation p.E715* 0.40 TCGA-63-A5MU-01 21 11058319 11058319 C G BAGE2 RNA 0.05 TCGA-63-A5MU-01 21 15558379 15558379 T C LIPI Silent p.A169A 0.23 TCGA-63-A5MU-01 21 31803053 31803053 C G KRTAP13-4 Missense_Mutation p.R154G 0.27 tolerated(1) benign(0.001) TCGA-63-A5MU-01 22 18073135 18073135 G A SLC25A18 3'UTR 0.79 TCGA-63-A5MU-01 22 19118872 19118872 G A TSSK2 5'UTR 0.88 TCGA-63-A5MU-01 22 38823524 38823524 C A KCNJ4 Missense_Mutation p.R205L 0.86 deleterious(0) probably_damaging(0.999) TCGA-63-A5MU-01 22 41721904 41721904 C A ZC3H7B Silent p.A89A 0.78 TCGA-63-A5MU-01 2 103120138 103120138 G A SLC9A4 Missense_Mutation p.E318K 0.20 deleterious(0) probably_damaging(0.999) TCGA-63-A5MU-01 2 11332322 11332322 T - ROCK2 Frame_Shift_Del p.N1372Tfs*22 0.17 TCGA-63-A5MU-01 2 113789297 113789297 G A IL36B 5'UTR 0.14 TCGA-63-A5MU-01 2 130865584 130865585 GG A POTEF Frame_Shift_Del p.P375* 0.27 TCGA-63-A5MU-01 2 131976175 131976175 A G POTEE Missense_Mutation p.H67R 0.25 deleterious_low_confidence(0) benign(0.227) TCGA-63-A5MU-01 2 141707957 141707957 C - LRP1B Frame_Shift_Del p.D995Tfs*184 0.38 TCGA-63-A5MU-01 2 155566235 155566235 G T KCNJ3 Missense_Mutation p.D275Y 0.67 deleterious(0) probably_damaging(0.989) TCGA-63-A5MU-01 2 157182273 157182273 C A NR4A2 Missense_Mutation p.D594Y 0.22 deleterious(0) probably_damaging(1) TCGA-63-A5MU-01 2 160139543 160139543 T C WDSUB1 Missense_Mutation p.D13G 0.18 tolerated(0.07) probably_damaging(1) TCGA-63-A5MU-01 2 160709861 160709861 G C LY75-CD302 Nonsense_Mutation p.S889* 0.19 TCGA-63-A5MU-01 2 167318958 167318958 C A SCN7A Missense_Mutation p.A342S 0.17 tolerated(0.14) benign(0.372) TCGA-63-A5MU-01 2 167318983 167318983 G T SCN7A Missense_Mutation p.F333L 0.23 deleterious(0) benign(0.257) TCGA-63-A5MU-01 2 171371482 171371482 C T MYO3B Missense_Mutation p.T1141M 0.18 tolerated_low_confidence(0.2) benign(0.042) TCGA-63-A5MU-01 2 178576537 178576537 C T PDE11A Missense_Mutation p.D705N 0.21 deleterious(0.01) possibly_damaging(0.886) TCGA-63-A5MU-01 2 179549645 179549645 G A TTN Missense_Mutation p.P10848S 0.29 TCGA-63-A5MU-01 2 182344982 182344982 G T ITGA4 Missense_Mutation p.G248V 0.60 deleterious(0.01) probably_damaging(1) TCGA-63-A5MU-01 2 198265449 198265449 T C SF3B1 Missense_Mutation p.Q903R 0.18 deleterious(0) probably_damaging(0.98) TCGA-63-A5MU-01 2 202264189 202264189 G A TRAK2 Nonsense_Mutation p.R131* 0.14 TCGA-63-A5MU-01 2 204244955 204244955 G T ABI2 Missense_Mutation p.V104F 0.64 deleterious(0) probably_damaging(1) TCGA-63-A5MU-01 2 207041492 207041492 G A GPR1 Silent p.F160F 0.65 TCGA-63-A5MU-01 2 219487567 219487567 G A PLCD4 Silent p.L246L 0.22 TCGA-63-A5MU-01 2 231774591 231774591 G C GPR55 3'UTR 0.26 TCGA-63-A5MU-01 2 27688734 27688734 G A IFT172 Silent p.L570L 0.12 TCGA-63-A5MU-01 2 58392964 58392964 A G FANCL Missense_Mutation p.S201P 0.22 tolerated(0.08) benign(0.384) TCGA-63-A5MU-01 2 71365756 71365756 G T MPHOSPH10 Missense_Mutation p.R412L 0.15 deleterious(0) probably_damaging(0.968) TCGA-63-A5MU-01 2 74592276 74592276 G A DCTN1 Missense_Mutation p.S1041F 0.61 deleterious(0) probably_damaging(0.928) TCGA-63-A5MU-01 2 80808878 80808878 T C CTNNA2 Silent p.Y647Y 0.66 TCGA-63-A5MU-01 2 86732989 86732989 C T CHMP3 Missense_Mutation p.E232K 0.24 tolerated(0.11) possibly_damaging(0.54) TCGA-63-A5MU-01 2 89416905 89416905 G C IGKV1-17 Missense_Mutation p.F93L 0.21 deleterious(0) probably_damaging(0.922) TCGA-63-A5MU-01 3 108288348 108288348 T C KIAA1524 Missense_Mutation p.H334R 0.73 tolerated(1) benign(0.001) TCGA-63-A5MU-01 3 119132994 119132994 G T ARHGAP31 Nonsense_Mutation p.E740* 0.18 TCGA-63-A5MU-01 3 138375045 138375045 G A PIK3CB Missense_Mutation p.A1005V 0.05 deleterious(0.04) probably_damaging(0.954) TCGA-63-A5MU-01 3 147130313 147130313 C G ZIC1 Missense_Mutation p.P331A 0.70 deleterious(0.02) probably_damaging(0.992) TCGA-63-A5MU-01 3 149245745 149245745 G T WWTR1 Silent p.L261L 0.13 TCGA-63-A5MU-01 3 15262296 15262296 C T CAPN7 Missense_Mutation p.A149V 0.35 tolerated(0.22) benign(0.072) TCGA-63-A5MU-01 3 158422545 158422545 C G RARRES1 Intron 0.18 TCGA-63-A5MU-01 3 173322631 173322631 T G NLGN1 Silent p.L81L 0.70 TCGA-63-A5MU-01 3 184428758 184428758 G A MAGEF1 Silent p.A284A 0.15 TCGA-63-A5MU-01 3 195453291 195453291 C G MUC20 Missense_Mutation p.P606R 0.44 deleterious(0.04) unknown(0) TCGA-63-A5MU-01 3 27427512 27427512 A G SLC4A7 Silent p.V1112V 0.49 TCGA-63-A5MU-01 3 36779305 36779305 C A DCLK3 Silent p.A282A 0.31 TCGA-63-A5MU-01 3 50098643 50098643 A T RBM6 Missense_Mutation p.Q781L 0.53 tolerated(0.29) benign(0.004) TCGA-63-A5MU-01 3 59999837 59999837 C A FHIT Missense_Mutation p.D49Y 0.38 deleterious(0) probably_damaging(0.974) TCGA-63-A5MU-01 3 74334455 74334455 C A CNTN3 Splice_Site p.X902_splice 0.23 TCGA-63-A5MU-01 3 88189494 88189494 C G ZNF654 Nonsense_Mutation p.S345* 0.28 TCGA-63-A5MU-01 4 107016668 107016668 C A TBCK Missense_Mutation p.V848L 0.22 tolerated(0.22) benign(0.094) TCGA-63-A5MU-01 4 108566146 108566146 G A PAPSS1 Silent p.L440L 0.27 TCGA-63-A5MU-01 4 123665063 123665063 G T BBS12 Silent p.A672A 0.23 TCGA-63-A5MU-01 4 126240032 126240032 C G FAT4 Silent p.L822L 0.25 TCGA-63-A5MU-01 4 134084320 134084320 G A PCDH10 Missense_Mutation p.A996T 0.28 tolerated(0.55) benign(0.002) TCGA-63-A5MU-01 4 155600 155600 C T ZNF718 RNA 0.27 TCGA-63-A5MU-01 4 20482387 20482387 G T SLIT2 Missense_Mutation p.R172S 0.53 deleterious(0.01) probably_damaging(0.997) TCGA-63-A5MU-01 4 20852182 20852182 T A KCNIP4 Missense_Mutation p.Y91F 0.23 deleterious(0.01) benign(0.026) TCGA-63-A5MU-01 4 25278778 25278778 A T PI4K2B Missense_Mutation p.N472I 0.23 deleterious(0) benign(0.045) TCGA-63-A5MU-01 4 68490761 68490761 C T UBA6 Missense_Mutation p.G888D 0.26 deleterious(0) probably_damaging(1) TCGA-63-A5MU-01 4 85623557 85623557 C G WDFY3 Missense_Mutation p.E2849Q 0.33 deleterious(0) probably_damaging(1) TCGA-63-A5MU-01 5 11082830 11082830 G A CTNND2 Silent p.D922D 0.65 TCGA-63-A5MU-01 5 11346633 11346633 G T CTNND2 Silent p.A493A 0.67 TCGA-63-A5MU-01 5 115782519 115782519 G A SEMA6A Silent p.P961P 0.56 TCGA-63-A5MU-01 5 131008237 131008237 G C FNIP1 Missense_Mutation p.Q634E 0.33 tolerated_low_confidence(0.56) benign(0.12) TCGA-63-A5MU-01 5 131298346 131298346 C A ACSL6 Missense_Mutation p.R580L 0.22 deleterious(0) probably_damaging(0.999) TCGA-63-A5MU-01 5 139893001 139893001 C A ANKHD1 Missense_Mutation p.D1418E 0.46 benign(0.417) TCGA-63-A5MU-01 5 140389320 140389320 T G PCDHAC1 Missense_Mutation p.L897W 0.45 deleterious(0.02) probably_damaging(0.96) TCGA-63-A5MU-01 5 140514962 140514962 A T PCDHB5 5'UTR 0.52 TCGA-63-A5MU-01 5 140515716 140515716 G C PCDHB5 Missense_Mutation p.D234H 0.40 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-63-A5MU-01 5 140580976 140580976 C G PCDHB11 Missense_Mutation p.S543R 0.39 deleterious_low_confidence(0) possibly_damaging(0.583) TCGA-63-A5MU-01 5 15928330 15928330 C G FBXL7 Silent p.L153L 0.24 TCGA-63-A5MU-01 5 162910168 162910168 G T HMMR Nonsense_Mutation p.E559* 0.45 TCGA-63-A5MU-01 5 169482386 169482386 A G DOCK2 Missense_Mutation p.I1431V 0.67 tolerated(0.29) benign(0.003) TCGA-63-A5MU-01 5 23522450 23522450 C T PRDM9 Silent p.S182S 0.18 TCGA-63-A5MU-01 6 131602914 131602914 C T AKAP7 3'UTR 0.93 TCGA-63-A5MU-01 6 13305335 13305335 A G TBC1D7 Nonstop_Mutation p.*294Rext*32 0.86 TCGA-63-A5MU-01 6 144086663 144086663 C T PHACTR2 Silent p.V320V 0.36 TCGA-63-A5MU-01 6 145114990 145114990 G A UTRN Missense_Mutation p.G2981R 0.47 deleterious(0) probably_damaging(1) TCGA-63-A5MU-01 6 152737719 152737719 C T SYNE1 Silent p.T1951T 0.86 TCGA-63-A5MU-01 6 26017828 26017828 C G HIST1H1A Missense_Mutation p.E45Q 0.05 deleterious(0.04) probably_damaging(0.992) TCGA-63-A5MU-01 6 28543774 28543774 G T SCAND3 Missense_Mutation p.N236K 0.85 tolerated_low_confidence(0.07) benign(0.058) TCGA-63-A5MU-01 6 30309944 30309944 G A TRIM39 Missense_Mutation p.E489K 0.76 tolerated(0.1) probably_damaging(0.999) TCGA-63-A5MU-01 6 32123555 32123555 A G PPT2 Missense_Mutation p.Y149C 0.87 deleterious(0) probably_damaging(0.976) TCGA-63-A5MU-01 6 38980061 38980061 G A DNAH8 Missense_Mutation p.R4264K 0.10 probably_damaging(0.999) TCGA-63-A5MU-01 6 46660278 46660304 TGATATGATTAGCAGGTATGCTCTCAG - TDRD6 In_Frame_Del p.D1472_S1480del 0.88 TCGA-63-A5MU-01 7 100866805 100866805 C T ZNHIT1 Nonsense_Mutation p.R81* 0.32 TCGA-63-A5MU-01 7 103130322 103130322 C T RELN Silent p.Q3210Q 0.05 TCGA-63-A5MU-01 7 103155818 103155818 G T RELN Missense_Mutation p.H2645N 0.38 deleterious(0.04) probably_damaging(0.991) TCGA-63-A5MU-01 7 107393855 107393855 G C CBLL1 Splice_Site p.X61_splice 0.12 TCGA-63-A5MU-01 7 12254551 12254551 G C TMEM106B Missense_Mutation p.D39H 0.15 deleterious(0.03) possibly_damaging(0.77) TCGA-63-A5MU-01 7 141463950 141463950 A G TAS2R3 5'UTR 0.55 TCGA-63-A5MU-01 7 156798281 156798281 G T MNX1 Missense_Mutation p.S380Y 0.39 deleterious_low_confidence(0) unknown(0) TCGA-63-A5MU-01 7 31855724 31855724 C A PDE1C Missense_Mutation p.A603S 0.40 tolerated(0.53) benign(0.194) TCGA-63-A5MU-01 7 38299700 38299700 C T TRGC1 Missense_Mutation p.E171K 0.32 tolerated(1) benign(0.002) TCGA-63-A5MU-01 7 39504162 39504162 T A POU6F2 Silent p.V651V 0.58 TCGA-63-A5MU-01 7 47876595 47876595 C T PKD1L1 Missense_Mutation p.R1956H 0.18 deleterious(0.03) possibly_damaging(0.858) TCGA-63-A5MU-01 7 50450271 50450271 C T IKZF1 Missense_Mutation p.A152V 0.51 deleterious(0) probably_damaging(0.977) TCGA-63-A5MU-01 7 5541020 5541020 C T FBXL18 Missense_Mutation p.A294T 0.35 deleterious(0.03) benign(0.199) TCGA-63-A5MU-01 7 72987714 72987714 G A TBL2 Silent p.A178A 0.38 TCGA-63-A5MU-01 7 81611901 81611901 T G CACNA2D1 Missense_Mutation p.Y646S 0.50 deleterious(0.02) possibly_damaging(0.804) TCGA-63-A5MU-01 7 87839380 87839380 C T SRI Nonsense_Mutation p.W105* 0.16 TCGA-63-A5MU-01 7 94293040 94293040 G A PEG10 Missense_Mutation p.D58N 0.10 deleterious_low_confidence(0.01) benign(0.322) TCGA-63-A5MU-01 8 103291367 103291367 C A UBR5 Missense_Mutation p.R2024L 0.19 deleterious(0.02) possibly_damaging(0.791) TCGA-63-A5MU-01 8 105405037 105405037 T A DPYS Missense_Mutation p.Y473F 0.72 tolerated(0.19) probably_damaging(0.998) TCGA-63-A5MU-01 8 113529395 113529395 C T CSMD3 Missense_Mutation p.D1542N 0.72 deleterious(0.03) probably_damaging(0.951) TCGA-63-A5MU-01 8 120118166 120118166 T A COLEC10 Silent p.A190A 0.72 TCGA-63-A5MU-01 8 131070292 131070292 T A ASAP1 Missense_Mutation p.I1075F 0.21 deleterious(0) probably_damaging(0.972) TCGA-63-A5MU-01 8 139163584 139163584 G T FAM135B Nonsense_Mutation p.S1045* 0.19 TCGA-63-A5MU-01 8 144945544 144945544 G C EPPK1 Missense_Mutation p.I626M 0.27 probably_damaging(0.982) TCGA-63-A5MU-01 8 16884892 16884892 C T MICU3 Missense_Mutation p.T35I 0.89 tolerated_low_confidence(0.19) benign(0.003) TCGA-63-A5MU-01 8 36793436 36793436 T G KCNU1 Nonstop_Mutation p.*1150Eext*21 0.07 TCGA-63-A5MU-01 8 51314856 51314856 C T SNTG1 Silent p.I38I 0.17 TCGA-63-A5MU-01 8 69445342 69445342 G A C8orf34 Missense_Mutation p.E355K 0.16 deleterious(0.01) probably_damaging(0.971) TCGA-63-A5MU-01 8 70585289 70585289 C T SLCO5A1 Missense_Mutation p.D788N 0.17 tolerated_low_confidence(0.72) benign(0.001) TCGA-63-A5MU-01 8 85785596 85785596 C A RALYL Missense_Mutation p.L230M 0.62 deleterious(0) probably_damaging(0.999) TCGA-63-A5MU-01 8 88884936 88884936 C T DCAF4L2 3'UTR 0.64 TCGA-63-A5MU-01 9 113190037 113190037 A G SVEP1 Silent p.L1937L 0.65 TCGA-63-A5MU-01 9 117360009 117360009 C T ATP6V1G1 Missense_Mutation p.R115C 0.20 deleterious(0.02) benign(0.004) TCGA-63-A5MU-01 9 121929770 121929770 A C BRINP1 Silent p.P626P 0.51 TCGA-63-A5MU-01 9 127915925 127915925 G T PPP6C Missense_Mutation p.P223T 0.23 deleterious(0) probably_damaging(0.928) TCGA-63-A5MU-01 9 131843434 131843434 G T DOLPP1 Silent p.S8S 0.23 TCGA-63-A5MU-01 9 138376950 138376950 C T PPP1R26 Silent p.P198P 0.27 TCGA-63-A5MU-01 9 140943659 140943659 A G CACNA1B Splice_Site p.X1202_splice 0.50 TCGA-63-A5MU-01 9 21202089 21202089 G T IFNA7 Missense_Mutation p.L26M 0.33 deleterious(0.02) probably_damaging(0.986) TCGA-63-A5MU-01 9 84606755 84606755 C G SPATA31D1 Nonsense_Mutation p.S457* 0.26 TCGA-63-A5MU-01 9 84607494 84607494 C A SPATA31D1 Silent p.P703P 0.63 TCGA-63-A5MU-01 9 95179504 95179504 T G OMD Missense_Mutation p.N113H 0.30 deleterious(0) probably_damaging(1) TCGA-63-A5MU-01 9 95997132 95997132 A T WNK2 Missense_Mutation p.Y373F 0.17 unknown(0) TCGA-63-A5MU-01 X 101910742 101910742 G A GPRASP1 Missense_Mutation p.S634N 0.24 tolerated(0.21) benign(0.006) TCGA-63-A5MU-01 X 130419240 130419240 C T IGSF1 Missense_Mutation p.E194K 0.32 tolerated(0.27) benign(0.065) TCGA-63-A5MU-01 X 144905371 144905371 G A SLITRK2 Silent p.L476L 0.90 TCGA-63-A5MU-01 X 148627143 148627143 C T CXorf40A Intron 0.84 TCGA-63-A5MU-01 X 152159968 152159968 C G PNMA5 Missense_Mutation p.E59Q 0.90 tolerated(0.06) probably_damaging(0.978) TCGA-63-A5MU-01 X 153220093 153220093 G A HCFC1 Missense_Mutation p.R1253C 0.90 tolerated_low_confidence(0.23) benign(0.001) TCGA-63-A5MU-01 X 20183025 20183025 C T RPS6KA3 Missense_Mutation p.A586T 0.78 deleterious(0) probably_damaging(0.976) TCGA-63-A5MU-01 X 21666998 21666998 G C CNKSR2 Missense_Mutation p.R914S 0.84 deleterious(0.04) benign(0.231) TCGA-63-A5MU-01 X 31198540 31198540 G C DMD Missense_Mutation p.R3345G 0.80 benign(0.433) TCGA-63-A5MU-01 X 44088964 44088964 C A EFHC2 Missense_Mutation p.R561I 0.90 tolerated(0.07) benign(0.284) TCGA-63-A5MU-01 X 44703801 44703801 C T DUSP21 Silent p.P141P 0.91 TCGA-63-A5MU-01 X 46898369 46898369 G A JADE3 Missense_Mutation p.E292K 0.31 deleterious(0.02) probably_damaging(0.96) TCGA-63-A5MU-01 X 48674579 48674579 C T HDAC6 Missense_Mutation p.R509W 0.05 deleterious(0.01) probably_damaging(0.969) TCGA-63-A5MU-01 X 52679441 52679441 G A SSX7 Nonsense_Mutation p.Q98* 0.90 TCGA-63-A5MU-01 X 55513746 55513746 T A USP51 Missense_Mutation p.I543L 0.97 tolerated(0.47) benign(0.042) TCGA-63-A5MU-01 X 70346286 70346286 C T MED12 Silent p.L879L 0.05 TCGA-63-A5MU-01 X 70828827 70828827 C T ACRC Missense_Mutation p.P491S 0.76 unknown(0) TCGA-63-A5MU-01 X 84569496 84569496 G A POF1B Missense_Mutation p.S300L 0.29 deleterious(0.04) benign(0.031) TCGA-63-A5MU-01 X 85403704 85403704 C T DACH2 Missense_Mutation p.P27L 0.31 deleterious(0) benign(0.022) TCGA-63-A5MV-01 10 116045782 116045782 G A VWA2 Missense_Mutation p.R361Q 0.18 tolerated(0.11) benign(0.072) TCGA-63-A5MV-01 10 117059651 117059651 C A ATRNL1 Silent p.P841P 0.28 TCGA-63-A5MV-01 10 118101554 118101554 A G CCDC172 Missense_Mutation p.I97V 0.24 tolerated(0.89) benign(0.021) TCGA-63-A5MV-01 10 12856254 12856254 C T CAMK1D Silent p.L234L 0.06 TCGA-63-A5MV-01 10 17087003 17087003 T A CUBN Intron 0.44 TCGA-63-A5MV-01 10 44052416 44052416 C T ZNF239 Missense_Mutation p.G371E 0.29 deleterious(0) probably_damaging(1) TCGA-63-A5MV-01 10 54531420 54531420 C A MBL2 5'UTR 0.36 TCGA-63-A5MV-01 10 71175993 71175993 G A TACR2 Silent p.P29P 0.35 TCGA-63-A5MV-01 10 88635749 88635749 G T BMPR1A 5'UTR 0.31 TCGA-63-A5MV-01 10 88703203 88703203 C T MMRN2 Silent p.L446L 0.33 TCGA-63-A5MV-01 11 107403108 107403108 C A ALKBH8 Missense_Mutation p.D266Y 0.29 deleterious(0) probably_damaging(0.981) TCGA-63-A5MV-01 11 130343235 130343235 C T ADAMTS15 Missense_Mutation p.P791L 0.09 deleterious(0.03) probably_damaging(1) TCGA-63-A5MV-01 11 60264809 60264809 A C MS4A12 Silent p.P6P 0.33 TCGA-63-A5MV-01 11 66472796 66472796 C G SPTBN2 Missense_Mutation p.G651R 0.22 tolerated(0.29) possibly_damaging(0.535) TCGA-63-A5MV-01 11 7064021 7064021 T A NLRP14 Nonsense_Mutation p.L255* 0.27 TCGA-63-A5MV-01 11 89531621 89531621 G A TRIM49 Missense_Mutation p.H346Y 0.25 tolerated(1) benign(0.008) TCGA-63-A5MV-01 12 121712005 121712005 G C CAMKK2 Missense_Mutation p.L109V 0.22 tolerated(0.5) benign(0.008) TCGA-63-A5MV-01 12 48921860 48921860 C T OR8S1 Missense_Mutation p.R352C 0.29 benign(0.001) TCGA-63-A5MV-01 12 53225312 53225312 C T KRT79 Silent p.E192E 0.25 TCGA-63-A5MV-01 12 72335382 72335382 G T TPH2 Missense_Mutation p.G42C 0.23 tolerated(0.07) benign(0.299) TCGA-63-A5MV-01 12 85518272 85518272 C A LRRIQ1 Missense_Mutation p.Q1328K 0.29 tolerated(0.06) benign(0.293) TCGA-63-A5MV-01 14 105173700 105173700 C T INF2 Nonsense_Mutation p.Q366* 0.27 TCGA-63-A5MV-01 14 21883988 21883988 C T CHD8 Missense_Mutation p.E599K 0.23 tolerated(0.09) benign(0.014) TCGA-63-A5MV-01 14 59931624 59931624 C A GPR135 Silent p.A107A 0.23 TCGA-63-A5MV-01 15 25449558 25449558 C G SNORD115-19 RNA 0.10 TCGA-63-A5MV-01 15 29385314 29385314 G T APBA2 Missense_Mutation p.G369V 0.14 deleterious(0) probably_damaging(1) TCGA-63-A5MV-01 15 33603203 33603203 G C RYR3 5'UTR 0.22 TCGA-63-A5MV-01 15 35274218 35274218 T - ZNF770 Frame_Shift_Del p.K473Rfs*18 0.17 TCGA-63-A5MV-01 15 78393760 78393760 C A SH2D7 Missense_Mutation p.H389N 0.18 tolerated(0.3) benign(0.013) TCGA-63-A5MV-01 16 55855312 55855312 C T CES1 Missense_Mutation p.E221K 0.11 deleterious(0.01) possibly_damaging(0.8) TCGA-63-A5MV-01 16 58589799 58589799 C A CNOT1 Missense_Mutation p.Q831H 0.13 tolerated(0.12) benign(0.332) TCGA-63-A5MV-01 17 46847164 46847164 T C TTLL6 Missense_Mutation p.K779R 0.39 tolerated_low_confidence(0.08) benign(0.056) TCGA-63-A5MV-01 17 56619173 56619173 C T C17orf47 3'UTR 0.11 TCGA-63-A5MV-01 17 59482859 59482859 C A TBX2 Missense_Mutation p.L450M 0.50 tolerated(0.06) probably_damaging(0.994) TCGA-63-A5MV-01 17 7579522 7579522 A - TP53 Frame_Shift_Del p.E56Kfs*67 0.24 TCGA-63-A5MV-01 17 78272319 78272319 G C RNF213 Splice_Site p.X737_splice 0.12 TCGA-63-A5MV-01 17 78410076 78410076 C T ENDOV 3'UTR 0.15 TCGA-63-A5MV-01 18 43604651 43604651 C T PSTPIP2 Missense_Mutation p.A46T 0.18 deleterious(0.01) probably_damaging(0.911) TCGA-63-A5MV-01 18 63511111 63511111 G T CDH7 Missense_Mutation p.D349Y 0.14 deleterious(0.01) possibly_damaging(0.643) TCGA-63-A5MV-01 18 77477657 77477657 G T CTDP1 Missense_Mutation p.D731Y 0.19 deleterious(0) probably_damaging(0.996) TCGA-63-A5MV-01 19 12244172 12244172 G A ZNF20 Missense_Mutation p.H277Y 0.16 deleterious(0) probably_damaging(1) TCGA-63-A5MV-01 19 2129454 2129454 C G AP3D1 Missense_Mutation p.V199L 0.13 deleterious(0.02) possibly_damaging(0.86) TCGA-63-A5MV-01 19 3053797 3053797 C A AES 3'UTR 0.29 TCGA-63-A5MV-01 19 33635774 33635774 C T WDR88 Missense_Mutation p.R138C 0.21 deleterious(0.01) benign(0.051) TCGA-63-A5MV-01 19 36341906 36341906 C G NPHS1 Silent p.V161V 0.28 TCGA-63-A5MV-01 19 37488400 37488400 A G ZNF568 Missense_Mutation p.R539G 0.57 tolerated(0.69) benign(0.249) TCGA-63-A5MV-01 19 41026000 41026000 A T SPTBN4 Missense_Mutation p.H1199L 0.53 tolerated(1) probably_damaging(0.996) TCGA-63-A5MV-01 19 41113275 41113275 A G LTBP4 Silent p.Q399Q 0.12 TCGA-63-A5MV-01 19 42396802 42396802 A G ARHGEF1 Missense_Mutation p.T181A 0.44 deleterious(0) probably_damaging(0.946) TCGA-63-A5MV-01 19 4658038 4658038 C A C19orf10 Missense_Mutation p.K167N 0.25 deleterious(0.01) possibly_damaging(0.562) TCGA-63-A5MV-01 19 53572145 53572145 G A ZNF160 Nonsense_Mutation p.Q548* 0.15 TCGA-63-A5MV-01 19 54696168 54696168 G A TSEN34 Missense_Mutation p.R230Q 0.10 tolerated(0.05) probably_damaging(0.997) TCGA-63-A5MV-01 19 55526427 55526427 C G GP6 Missense_Mutation p.E296Q 0.19 deleterious_low_confidence(0) possibly_damaging(0.859) TCGA-63-A5MV-01 19 56599558 56599558 T C ZNF787 Missense_Mutation p.Q328R 0.38 deleterious(0.02) benign(0.028) TCGA-63-A5MV-01 19 8486797 8486797 G T MARCH2 Missense_Mutation p.V25F 0.18 tolerated_low_confidence(0.05) benign(0.071) TCGA-63-A5MV-01 19 8665912 8665912 C T ADAMTS10 Missense_Mutation p.R237Q 0.11 tolerated(0.35) benign(0.004) TCGA-63-A5MV-01 19 9076566 9076566 G T MUC16 Missense_Mutation p.S3627Y 0.11 unknown(0) TCGA-63-A5MV-01 1 109394720 109394720 C T AKNAD1 Silent p.T189T 0.17 TCGA-63-A5MV-01 1 111963958 111963958 C A OVGP1 Silent p.A281A 0.13 TCGA-63-A5MV-01 1 157739825 157739825 C A FCRL2 Missense_Mutation p.Q142H 0.10 tolerated(0.09) benign(0.039) TCGA-63-A5MV-01 1 164769067 164769067 G T PBX1 Missense_Mutation p.Q214H 0.17 deleterious(0) probably_damaging(1) TCGA-63-A5MV-01 1 165513802 165513802 G A LRRC52 Missense_Mutation p.R90Q 0.08 tolerated(0.39) benign(0.004) TCGA-63-A5MV-01 1 175372490 175372490 C A TNR Missense_Mutation p.E254D 0.25 tolerated(0.1) benign(0.046) TCGA-63-A5MV-01 1 176525610 176525610 G T PAPPA2 Missense_Mutation p.W51L 0.17 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-63-A5MV-01 1 176760619 176760619 G T PAPPA2 Splice_Site p.X1674_splice 0.09 TCGA-63-A5MV-01 1 205897035 205897035 T C SLC26A9 Missense_Mutation p.N366D 0.12 deleterious(0) probably_damaging(0.999) TCGA-63-A5MV-01 1 247053281 247053281 C G AHCTF1 Missense_Mutation p.E720Q 0.14 tolerated(0.09) benign(0.126) TCGA-63-A5MV-01 1 37271871 37271871 C T GRIK3 Silent p.S716S 0.26 TCGA-63-A5MV-01 1 53729904 53729904 C A LRP8 Missense_Mutation p.R531L 0.17 deleterious(0) probably_damaging(1) TCGA-63-A5MV-01 1 87563576 87563576 G C HS2ST1 Missense_Mutation p.W215S 0.10 deleterious(0) probably_damaging(0.996) TCGA-63-A5MV-01 1 87563577 87563577 G T HS2ST1 Missense_Mutation p.W215C 0.11 deleterious(0) probably_damaging(0.999) TCGA-63-A5MV-01 20 139535 139535 T A DEFB127 Missense_Mutation p.I57N 0.23 deleterious(0.04) probably_damaging(0.95) TCGA-63-A5MV-01 20 139536 139536 C A DEFB127 Silent p.I57I 0.23 TCGA-63-A5MV-01 20 210014 210014 A C DEFB129 Missense_Mutation p.K52Q 0.14 deleterious(0.05) probably_damaging(0.954) TCGA-63-A5MV-01 20 33874959 33874959 T C FAM83C Silent p.P541P 0.17 TCGA-63-A5MV-01 20 34092650 34092650 G C CEP250 Missense_Mutation p.E2151D 0.16 benign(0.007) TCGA-63-A5MV-01 21 28296522 28296522 C A ADAMTS5 Silent p.T881T 0.23 TCGA-63-A5MV-01 21 46117332 46117332 C A KRTAP10-12 Nonsense_Mutation p.C72* 0.26 TCGA-63-A5MV-01 2 109545676 109545676 C T EDAR Missense_Mutation p.E112K 0.11 tolerated(0.06) probably_damaging(0.987) TCGA-63-A5MV-01 2 152499087 152499087 C T NEB Splice_Site p.X2791_splice 0.25 TCGA-63-A5MV-01 2 166172221 166172221 G T SCN2A Nonsense_Mutation p.E542* 0.24 TCGA-63-A5MV-01 2 179425975 179425975 G T TTN Missense_Mutation p.P28295Q 0.11 TCGA-63-A5MV-01 2 179594417 179594417 C T TTN Missense_Mutation p.S6188N 0.11 TCGA-63-A5MV-01 2 179664419 179664419 C A TTN Missense_Mutation p.V237F 0.08 TCGA-63-A5MV-01 2 209200811 209200811 A T PIKFYVE Missense_Mutation p.Q1469H 0.19 deleterious(0) benign(0.027) TCGA-63-A5MV-01 2 220108277 220108277 A C GLB1L Missense_Mutation p.S7A 0.14 tolerated(0.6) benign(0) TCGA-63-A5MV-01 2 239184408 239184408 G A PER2 Missense_Mutation p.L142F 0.14 deleterious(0) probably_damaging(0.999) TCGA-63-A5MV-01 2 27423892 27423892 G A SLC5A6 Missense_Mutation p.R580W 0.08 tolerated(0.13) benign(0.015) TCGA-63-A5MV-01 2 54152701 54152701 G T PSME4 Missense_Mutation p.T595N 0.09 tolerated(0.18) benign(0.041) TCGA-63-A5MV-01 2 54342872 54342872 G C ACYP2 Missense_Mutation p.E13Q 0.13 deleterious(0) probably_damaging(0.988) TCGA-63-A5MV-01 2 89265931 89265931 C T IGKV1-6 Silent p.K67K 0.17 TCGA-63-A5MV-01 2 97268565 97268565 G T KANSL3 Silent p.L728L 0.05 TCGA-63-A5MV-01 3 101051643 101051643 T C SENP7 Silent p.K848K 0.21 TCGA-63-A5MV-01 3 101571014 101571014 G T NFKBIZ Missense_Mutation p.L125F 0.09 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-63-A5MV-01 3 125032502 125032502 T C ZNF148 Splice_Site 0.11 TCGA-63-A5MV-01 3 142775232 142775232 C T U2SURP Silent p.S1010S 0.37 TCGA-63-A5MV-01 3 155198797 155198797 C G PLCH1 Missense_Mutation p.S1681T 0.07 tolerated_low_confidence(0.12) benign(0.066) TCGA-63-A5MV-01 3 39227810 39227810 G C XIRP1 Missense_Mutation p.P1043A 0.27 tolerated(0.1) benign(0.004) TCGA-63-A5MV-01 3 42906040 42906040 G A ACKR2 Missense_Mutation p.D16N 0.17 tolerated(0.34) benign(0.001) TCGA-63-A5MV-01 3 7503377 7503377 A T GRM7 Missense_Mutation p.I495F 0.20 deleterious(0) benign(0.092) TCGA-63-A5MV-01 3 97887601 97887601 C A OR5H15 Missense_Mutation p.Q20K 0.26 tolerated(0.1) benign(0.008) TCGA-63-A5MV-01 3 9833029 9833029 T A TADA3 Missense_Mutation p.E41V 0.30 deleterious(0) possibly_damaging(0.694) TCGA-63-A5MV-01 4 1235242 1235242 G A CTBP1 Intron 0.37 TCGA-63-A5MV-01 4 140201354 140201354 G A MGARP 5'UTR 0.14 TCGA-63-A5MV-01 4 156278626 156278626 T C MAP9 Missense_Mutation p.N366D 0.13 deleterious(0.04) possibly_damaging(0.628) TCGA-63-A5MV-01 4 26483166 26483166 C A CCKAR 3'UTR 0.19 TCGA-63-A5MV-01 4 41600982 41600982 A T LIMCH1 Nonsense_Mutation p.K95* 0.28 TCGA-63-A5MV-01 4 46099335 46099335 C A GABRG1 Missense_Mutation p.D46Y 0.24 tolerated(0.07) probably_damaging(0.995) TCGA-63-A5MV-01 4 658702 658702 C G PDE6B Missense_Mutation p.A721G 0.19 deleterious(0.01) benign(0.246) TCGA-63-A5MV-01 4 69683769 69683769 G T UGT2B10 Missense_Mutation p.E247D 0.19 deleterious(0.05) benign(0.35) TCGA-63-A5MV-01 4 70866668 70866668 A G STATH 3'UTR 0.22 TCGA-63-A5MV-01 4 79461930 79461930 G T FRAS1 Silent p.A3897A 0.19 TCGA-63-A5MV-01 4 85762309 85762309 G A WDFY3 Nonsense_Mutation p.Q138* 0.20 TCGA-63-A5MV-01 4 94547474 94547474 G A GRID2 Missense_Mutation p.A750T 0.07 tolerated(0.09) probably_damaging(0.984) TCGA-63-A5MV-01 5 140589197 140589197 C T PCDHB12 Missense_Mutation p.P240S 0.25 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-63-A5MV-01 5 140719817 140719817 G T PCDHGA2 Nonsense_Mutation p.G427* 0.33 TCGA-63-A5MV-01 5 140723786 140723786 C T PCDHGA3 Silent p.R62R 0.32 TCGA-63-A5MV-01 5 140741308 140741308 G C PCDHGB2 Missense_Mutation p.D536H 0.20 deleterious(0.01) probably_damaging(0.924) TCGA-63-A5MV-01 5 149375043 149375045 TTA - TIGD6 In_Frame_Del p.N290del 0.12 TCGA-63-A5MV-01 5 168244378 168244378 T A SLIT3 Silent p.T240T 0.34 TCGA-63-A5MV-01 5 17354223 17354223 G A CTD-2139B15.2 Intron 0.10 TCGA-63-A5MV-01 5 24491813 24491813 G T CDH10 Missense_Mutation p.T583N 0.43 deleterious(0) probably_damaging(0.987) TCGA-63-A5MV-01 5 5464334 5464334 G T KIAA0947 Silent p.G1629G 0.33 TCGA-63-A5MV-01 5 83360607 83360607 G A EDIL3 Silent p.P288P 0.22 TCGA-63-A5MV-01 6 100960587 100960587 T C ASCC3 Missense_Mutation p.K2095E 0.08 tolerated(0.25) benign(0.338) TCGA-63-A5MV-01 6 160455468 160455468 T A IGF2R Missense_Mutation p.L410H 0.08 deleterious(0) probably_damaging(1) TCGA-63-A5MV-01 6 163987898 163987898 C T QKI Intron 0.50 TCGA-63-A5MV-01 6 27861515 27861515 C T HIST1H2BO Missense_Mutation p.S92F 0.12 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-63-A5MV-01 6 32943810 32943810 C A BRD2 Silent p.P158P 0.11 TCGA-63-A5MV-01 6 44084277 44084277 C A MRPL14 Splice_Site p.X24_splice 0.20 TCGA-63-A5MV-01 6 49754699 49754699 C T PGK2 Missense_Mutation p.D68N 0.14 tolerated(0.23) benign(0.188) TCGA-63-A5MV-01 6 69348768 69348768 T C BAI3 Silent p.Y67Y 0.23 TCGA-63-A5MV-01 6 7584569 7584569 C T DSP Silent p.L2358L 0.10 TCGA-63-A5MV-01 7 100685352 100685352 G T MUC17 Missense_Mutation p.S3552I 0.29 benign(0.235) TCGA-63-A5MV-01 7 158445174 158445174 T C NCAPG2 Splice_Site p.X916_splice 0.12 TCGA-63-A5MV-01 7 81591240 81591240 C A CACNA2D1 Missense_Mutation p.S979I 0.15 tolerated(0.09) benign(0.014) TCGA-63-A5MV-01 7 98452901 98452901 G T TMEM130 Silent p.T255T 0.12 TCGA-63-A5MV-01 8 110308707 110308707 G A NUDCD1 Missense_Mutation p.S122L 0.19 tolerated(0.31) benign(0) TCGA-63-A5MV-01 8 110439325 110439325 T C PKHD1L1 Silent p.C980C 0.18 TCGA-63-A5MV-01 8 145583696 145583696 G T SLC52A2 Missense_Mutation p.G182C 0.28 deleterious(0.01) possibly_damaging(0.907) TCGA-63-A5MV-01 8 19677989 19677989 T G INTS10 Missense_Mutation p.L134R 0.10 deleterious(0) probably_damaging(1) TCGA-63-A5MV-01 8 56015433 56015433 G A XKR4 Missense_Mutation p.D129N 0.19 deleterious(0) probably_damaging(0.996) TCGA-63-A5MV-01 8 89086928 89086928 C A MMP16 Missense_Mutation p.G376V 0.15 deleterious(0) probably_damaging(0.982) TCGA-63-A5MV-01 9 107360735 107360735 C G OR13C5 3'UTR 0.32 TCGA-63-A5MV-01 9 111714569 111714569 C G CTNNAL1 Missense_Mutation p.K585N 0.22 deleterious(0) probably_damaging(0.987) TCGA-63-A5MV-01 9 34552703 34552703 C G CNTFR Silent p.P306P 0.12 TCGA-63-A5MV-01 9 88307616 88307616 C A AGTPBP1 Missense_Mutation p.A49S 0.16 tolerated(0.16) benign(0.087) TCGA-63-A5MV-01 9 97082683 97082683 G - NUTM2F Frame_Shift_Del p.P392Lfs*43 0.19 TCGA-63-A5MV-01 X 101572304 101572304 T C NXF2 Intron 0.38 TCGA-63-A5MV-01 X 118968829 118968829 C A UPF3B 3'UTR 0.70 TCGA-63-A5MV-01 X 118968830 118968830 A T UPF3B 3'UTR 0.69 TCGA-63-A5MV-01 X 131202531 131202531 T C MST4 Silent p.N177N 0.30 TCGA-63-A5MV-01 X 3002421 3002421 G A ARSF Missense_Mutation p.E182K 0.50 tolerated(0.77) benign(0.166) TCGA-63-A5MV-01 X 37953666 37953666 C T SYTL5 Missense_Mutation p.S317F 0.23 deleterious(0.03) possibly_damaging(0.452) TCGA-63-A5MV-01 X 41587011 41587011 C T GPR82 Silent p.Y244Y 0.28 TCGA-63-A5MV-01 X 77912682 77912682 G T ZCCHC5 Silent p.P412P 0.34 TCGA-63-A5MV-01 X 86888890 86888890 G T KLHL4 Missense_Mutation p.G564V 0.19 deleterious(0) probably_damaging(0.954) TCGA-63-A5MW-01 10 105795277 105795277 C T COL17A1 Missense_Mutation p.G1155S 0.26 probably_damaging(0.999) TCGA-63-A5MW-01 10 108437143 108437143 C A SORCS1 Missense_Mutation p.S587I 0.50 deleterious(0.01) possibly_damaging(0.448) TCGA-63-A5MW-01 10 114911587 114911587 G A TCF7L2 Missense_Mutation p.V369I 0.21 tolerated(0.39) probably_damaging(0.996) TCGA-63-A5MW-01 10 115381688 115381688 C A NRAP Silent p.T903T 0.20 TCGA-63-A5MW-01 10 115457335 115457335 G A CASP7 Missense_Mutation p.R61Q 0.24 tolerated(0.06) possibly_damaging(0.856) TCGA-63-A5MW-01 10 37431214 37431214 C A ANKRD30A Silent p.A407A 0.17 TCGA-63-A5MW-01 10 38343782 38343782 G A ZNF33A Missense_Mutation p.E244K 0.29 tolerated(0.21) probably_damaging(0.922) TCGA-63-A5MW-01 10 44111895 44111895 G TT ZNF485 Frame_Shift_Ins p.C135Ffs*13 0.18 TCGA-63-A5MW-01 10 52834502 52834502 C T PRKG1 Missense_Mutation p.S51L 0.25 deleterious(0.01) possibly_damaging(0.511) TCGA-63-A5MW-01 10 53227489 53227489 A T PRKG1 Missense_Mutation p.K162M 0.22 tolerated(0.13) possibly_damaging(0.555) TCGA-63-A5MW-01 10 56089418 56089418 C G PCDH15 Missense_Mutation p.V215L 0.40 tolerated(0.09) benign(0.084) TCGA-63-A5MW-01 10 56106245 56106245 C T PCDH15 Splice_Site p.X159_splice 0.38 TCGA-63-A5MW-01 10 6261562 6261562 G A PFKFB3 Missense_Mutation p.D177N 0.19 benign(0.131) TCGA-63-A5MW-01 10 63173236 63173236 C T TMEM26 Silent p.Q221Q 0.22 TCGA-63-A5MW-01 10 64159454 64159454 C A ZNF365 Intron 0.26 TCGA-63-A5MW-01 10 76788350 76788350 A G KAT6B Silent p.L1256L 0.29 TCGA-63-A5MW-01 10 79581063 79581063 G A DLG5 Missense_Mutation p.P1060L 0.31 tolerated_low_confidence(0.32) benign(0.005) TCGA-63-A5MW-01 10 88717364 88717364 C T MMRN2 5'UTR 0.28 TCGA-63-A5MW-01 10 99968297 99968297 A G R3HCC1L Silent p.P142P 0.50 TCGA-63-A5MW-01 11 10011075 10011075 A T SBF2 Missense_Mutation p.V455D 0.19 deleterious(0) possibly_damaging(0.555) TCGA-63-A5MW-01 11 102573525 102573525 G T MMP27 Missense_Mutation p.T193N 0.22 deleterious(0) probably_damaging(0.912) TCGA-63-A5MW-01 11 103182683 103182683 A G DYNC2H1 Missense_Mutation p.N3864S 0.33 benign(0.001) TCGA-63-A5MW-01 11 108163481 108163482 - A ATM Frame_Shift_Ins p.I1525Nfs*6 0.16 TCGA-63-A5MW-01 11 117869987 117869987 G A IL10RA Silent p.K456K 0.25 TCGA-63-A5MW-01 11 124439980 124439980 C - OR8A1 Frame_Shift_Del p.M7Cfs*20 0.30 TCGA-63-A5MW-01 11 124637472 124637472 T G MSANTD2 Missense_Mutation p.Y375S 0.46 deleterious_low_confidence(0) probably_damaging(0.918) TCGA-63-A5MW-01 11 1274114 1274114 C A MUC5B Missense_Mutation p.P5041T 0.33 unknown(0) TCGA-63-A5MW-01 11 133801461 133801461 G A IGSF9B Missense_Mutation p.P419S 0.37 deleterious(0) probably_damaging(0.974) TCGA-63-A5MW-01 11 134064630 134064630 C A NCAPD3 Missense_Mutation p.R540I 0.23 deleterious(0.01) benign(0.089) TCGA-63-A5MW-01 11 134257439 134257439 C T B3GAT1 Intron 0.11 TCGA-63-A5MW-01 11 20180770 20180770 A G DBX1 Missense_Mutation p.F146L 0.28 tolerated(0.27) benign(0.327) TCGA-63-A5MW-01 11 20805375 20805375 A C NELL1 Missense_Mutation p.S112R 0.49 tolerated(1) benign(0.071) TCGA-63-A5MW-01 11 22747882 22747882 G T GAS2 Silent p.S104S 0.31 TCGA-63-A5MW-01 11 280952 280952 G A NLRP6 Silent p.R406R 0.24 TCGA-63-A5MW-01 11 33047279 33047279 G T DEPDC7 Missense_Mutation p.V50L 0.09 deleterious(0) probably_damaging(0.996) TCGA-63-A5MW-01 11 34167728 34167728 C T NAT10 Missense_Mutation p.R1023W 0.68 deleterious(0) unknown(0) TCGA-63-A5MW-01 11 4869738 4869738 C A OR51S1 Missense_Mutation p.G234V 0.30 deleterious(0.03) probably_damaging(0.958) TCGA-63-A5MW-01 11 49597969 49597969 G - RP11-707M1.1 RNA 0.20 TCGA-63-A5MW-01 11 49974871 49974871 G C OR4C13 Missense_Mutation p.L299F 0.29 deleterious_low_confidence(0.04) benign(0.078) TCGA-63-A5MW-01 11 55322362 55322362 T A OR4C15 Missense_Mutation p.C194S 0.27 deleterious_low_confidence(0) possibly_damaging(0.834) TCGA-63-A5MW-01 11 557618 557618 A T C11orf35 Missense_Mutation p.M193K 0.33 tolerated(0.05) benign(0.018) TCGA-63-A5MW-01 11 558188 558188 C G C11orf35 Missense_Mutation p.L124F 0.28 deleterious(0) probably_damaging(0.997) TCGA-63-A5MW-01 11 55872797 55872797 C T OR8H2 Silent p.S93S 0.22 TCGA-63-A5MW-01 11 56237960 56237960 G T OR5M3 Missense_Mutation p.T5N 0.25 deleterious(0.01) probably_damaging(0.918) TCGA-63-A5MW-01 11 57114028 57114028 T C P2RX3 Silent p.L44L 0.10 TCGA-63-A5MW-01 11 57982489 57982489 C - OR1S1 Frame_Shift_Del p.M94Cfs*3 0.18 TCGA-63-A5MW-01 11 58206798 58206798 T C OR5B12 Missense_Mutation p.Y276C 0.12 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-63-A5MW-01 11 58275343 58275343 G C OR5B21 Missense_Mutation p.T79R 0.56 deleterious_low_confidence(0) benign(0.111) TCGA-63-A5MW-01 11 60309995 60309995 C T MS4A13 Nonsense_Mutation p.R136* 0.15 TCGA-63-A5MW-01 11 62378460 62378460 G T EML3 Silent p.R153R 0.13 TCGA-63-A5MW-01 11 67200221 67200221 G A RPS6KB2 Missense_Mutation p.E177K 0.21 deleterious(0) probably_damaging(1) TCGA-63-A5MW-01 11 73078629 73078629 G A ARHGEF17 Missense_Mutation p.G1999D 0.05 deleterious(0.03) benign(0.02) TCGA-63-A5MW-01 11 73717395 73717395 C T UCP3 Silent p.T52T 0.41 TCGA-63-A5MW-01 11 73941323 73941323 G T PPME1 Silent p.G144G 0.23 TCGA-63-A5MW-01 11 76868043 76868043 G C MYO7A Missense_Mutation p.C243S 0.14 deleterious(0.02) possibly_damaging(0.547) TCGA-63-A5MW-01 11 78380818 78380818 C T TENM4 Missense_Mutation p.R2191H 0.56 deleterious(0.01) possibly_damaging(0.715) TCGA-63-A5MW-01 11 88300672 88300672 G A GRM5 Nonsense_Mutation p.R727* 0.06 TCGA-63-A5MW-01 12 100173708 100173708 A G ANKS1B Missense_Mutation p.L263S 0.22 deleterious(0) probably_damaging(0.991) TCGA-63-A5MW-01 12 10279989 10279989 C T CLEC7A Intron 0.14 TCGA-63-A5MW-01 12 103288672 103288672 T G PAH Missense_Mutation p.I65L 0.32 tolerated(0.24) possibly_damaging(0.802) TCGA-63-A5MW-01 12 103288673 103288673 G A PAH Silent p.H64H 0.32 TCGA-63-A5MW-01 12 104682732 104682732 A G TXNRD1 Missense_Mutation p.T110A 0.04 tolerated(0.79) benign(0) TCGA-63-A5MW-01 12 111758105 111758105 C A CUX2 Silent p.P764P 0.41 TCGA-63-A5MW-01 12 11420811 11420811 G C PRB3 Silent p.P124P 0.12 TCGA-63-A5MW-01 12 120653393 120653393 C T PXN Intron 0.32 TCGA-63-A5MW-01 12 124352549 124352549 C T DNAH10 Silent p.L2350L 0.21 TCGA-63-A5MW-01 12 133447367 133447367 C A CHFR Missense_Mutation p.V116L 0.46 deleterious(0.03) benign(0.137) TCGA-63-A5MW-01 12 1702833 1702833 T C FBXL14 Missense_Mutation p.S134G 0.05 tolerated(0.29) benign(0.046) TCGA-63-A5MW-01 12 1748863 1748863 C A WNT5B Silent p.T114T 0.41 TCGA-63-A5MW-01 12 22025569 22025569 G A ABCC9 Missense_Mutation p.H730Y 0.49 tolerated(1) benign(0) TCGA-63-A5MW-01 12 38710835 38710835 G C ALG10B Missense_Mutation p.R47P 0.42 deleterious(0.03) possibly_damaging(0.855) TCGA-63-A5MW-01 12 41966168 41966168 A - PDZRN4 Frame_Shift_Del p.K531Sfs*25 0.40 TCGA-63-A5MW-01 12 46320879 46320879 T A SCAF11 Missense_Mutation p.R869W 0.05 deleterious(0) probably_damaging(0.988) TCGA-63-A5MW-01 12 49176556 49176556 G T ADCY6 Missense_Mutation p.A221E 0.21 tolerated(0.06) benign(0.115) TCGA-63-A5MW-01 12 49981309 49981309 A T FAM186B 3'UTR 0.36 TCGA-63-A5MW-01 12 51707672 51707672 C A BIN2 Missense_Mutation p.G33W 0.22 deleterious(0) probably_damaging(1) TCGA-63-A5MW-01 12 56874100 56874100 T A GLS2 Missense_Mutation p.E85V 0.15 deleterious(0.03) benign(0.175) TCGA-63-A5MW-01 12 56874101 56874101 C A GLS2 Nonsense_Mutation p.E85* 0.15 TCGA-63-A5MW-01 12 56874121 56874121 T C GLS2 Missense_Mutation p.Y78C 0.16 tolerated(0.11) possibly_damaging(0.64) TCGA-63-A5MW-01 12 6619520 6619520 A T NCAPD2 Intron 0.16 TCGA-63-A5MW-01 12 6730464 6730464 C A LPAR5 5'UTR 0.43 TCGA-63-A5MW-01 12 7254457 7254457 G C C1RL Intron 0.81 TCGA-63-A5MW-01 12 81283047 81283047 A G LIN7A Missense_Mutation p.C62R 0.41 deleterious(0) probably_damaging(0.951) TCGA-63-A5MW-01 13 114325830 114325830 G T GRK1 Missense_Mutation p.V282L 0.38 tolerated(0.49) benign(0.015) TCGA-63-A5MW-01 13 20325545 20325545 C A PSPC1 Missense_Mutation p.R278L 0.20 deleterious(0) probably_damaging(0.987) TCGA-63-A5MW-01 13 20325548 20325548 G A PSPC1 Missense_Mutation p.S277F 0.22 deleterious(0.01) possibly_damaging(0.611) TCGA-63-A5MW-01 13 25744477 25744477 G A AMER2 Silent p.S427S 0.17 TCGA-63-A5MW-01 13 39544490 39544490 A G STOML3 Silent p.D116D 0.64 TCGA-63-A5MW-01 13 42465662 42465662 T C VWA8 Missense_Mutation p.E182G 0.04 deleterious(0.01) probably_damaging(1) TCGA-63-A5MW-01 13 50115125 50115125 T C RCBTB1 Missense_Mutation p.T448A 0.70 deleterious(0.05) benign(0.388) TCGA-63-A5MW-01 13 58240656 58240656 C G PCDH17 Missense_Mutation p.Q874E 0.24 tolerated(0.09) benign(0.219) TCGA-63-A5MW-01 13 99127609 99127609 C T STK24 Missense_Mutation p.E124K 0.50 tolerated(1) benign(0.002) TCGA-63-A5MW-01 13 99500860 99500860 C A DOCK9 Missense_Mutation p.K1349N 0.35 deleterious(0) probably_damaging(0.999) TCGA-63-A5MW-01 14 104633248 104633248 C T KIF26A Missense_Mutation p.P326S 0.40 tolerated(0.73) probably_damaging(0.996) TCGA-63-A5MW-01 14 105414141 105414141 C T AHNAK2 Silent p.V2549V 0.34 TCGA-63-A5MW-01 14 106610786 106610786 T A IGHV3-15 5'UTR 0.16 TCGA-63-A5MW-01 14 107199149 107199149 G A IGHV3-72 Missense_Mutation p.T47I 0.21 deleterious_low_confidence(0) benign(0.118) TCGA-63-A5MW-01 14 20824505 20824505 C A PARP2 Missense_Mutation p.H394N 0.05 deleterious(0) probably_damaging(0.999) TCGA-63-A5MW-01 14 21359990 21359990 C T RNASE3 Nonsense_Mutation p.R49* 0.29 TCGA-63-A5MW-01 14 23851660 23851660 T C MYH6 Missense_Mutation p.K1925E 0.51 deleterious(0) possibly_damaging(0.528) TCGA-63-A5MW-01 14 23867973 23867973 C T MYH6 Missense_Mutation p.A619T 0.19 deleterious(0.03) benign(0.249) TCGA-63-A5MW-01 14 24033836 24033836 C T AP1G2 Missense_Mutation p.G286R 0.17 deleterious(0) probably_damaging(1) TCGA-63-A5MW-01 14 24731534 24731534 C T TGM1 Missense_Mutation p.V9M 0.20 tolerated_low_confidence(0.09) benign(0.025) TCGA-63-A5MW-01 14 29237327 29237327 G - FOXG1 Frame_Shift_Del p.A282Pfs*44 0.36 TCGA-63-A5MW-01 14 39818051 39818051 G T CTAGE5 Silent p.V711V 0.18 TCGA-63-A5MW-01 14 47351391 47351391 T C MDGA2 Missense_Mutation p.K758E 0.22 tolerated(0.15) benign(0.044) TCGA-63-A5MW-01 14 53100317 53100317 G T GPR137C Missense_Mutation p.V313L 0.45 tolerated(1) benign(0.094) TCGA-63-A5MW-01 14 62463045 62463045 A - SYT16 Frame_Shift_Del p.N104Ifs*63 0.21 TCGA-63-A5MW-01 14 64468657 64468657 A C SYNE2 Missense_Mutation p.E1215A 0.29 benign(0.329) TCGA-63-A5MW-01 14 77492004 77492004 C T IRF2BPL Missense_Mutation p.G711E 0.29 tolerated(0.31) unknown(0) TCGA-63-A5MW-01 14 93650153 93650153 C A MOAP1 Missense_Mutation p.M145I 0.31 tolerated(0.31) benign(0.022) TCGA-63-A5MW-01 15 25415747 25415747 G T SNORD115-3 5'Flank 0.29 TCGA-63-A5MW-01 15 25434571 25434571 T G SNORD115-11 RNA 0.12 TCGA-63-A5MW-01 15 25486812 25486812 G A SNORD115-40 5'Flank 0.14 TCGA-63-A5MW-01 15 25925049 25925049 C T ATP10A Silent p.K1313K 0.05 TCGA-63-A5MW-01 15 28460827 28460827 C A HERC2 Silent p.T2050T 0.40 TCGA-63-A5MW-01 15 34530572 34530572 A C SLC12A6 Missense_Mutation p.L888R 0.20 tolerated(0.28) possibly_damaging(0.842) TCGA-63-A5MW-01 15 38229122 38229122 T A TMCO5A Missense_Mutation p.M72K 0.26 tolerated(0.3) benign(0.19) TCGA-63-A5MW-01 15 43663528 43663528 C T TUBGCP4 5'UTR 0.20 TCGA-63-A5MW-01 15 49716536 49716536 C T FGF7 Silent p.L14L 0.29 TCGA-63-A5MW-01 15 50570857 50570857 C T GABPB1 Missense_Mutation p.R387H 0.13 tolerated_low_confidence(0.17) benign(0.001) TCGA-63-A5MW-01 15 52569366 52569366 C A MYO5C Intron 0.22 TCGA-63-A5MW-01 15 63970348 63970348 T G HERC1 Missense_Mutation p.K2256Q 0.28 benign(0.33) TCGA-63-A5MW-01 15 64027035 64027035 G A HERC1 Missense_Mutation p.T845I 0.40 possibly_damaging(0.87) TCGA-63-A5MW-01 15 64332419 64332419 G C DAPK2 Missense_Mutation p.F14L 0.34 tolerated(0.08) benign(0.017) TCGA-63-A5MW-01 15 82444598 82444598 G C EFTUD1 Missense_Mutation p.Q733E 0.27 tolerated(0.57) benign(0.004) TCGA-63-A5MW-01 15 84611374 84611374 G A ADAMTSL3 Missense_Mutation p.C715Y 0.30 deleterious(0) probably_damaging(1) TCGA-63-A5MW-01 15 90335512 90335512 G A ANPEP Nonsense_Mutation p.Q803* 0.34 TCGA-63-A5MW-01 15 96877312 96877312 G A NR2F2 Silent p.Q150Q 0.29 TCGA-63-A5MW-01 16 11830032 11830032 C G TXNDC11 Missense_Mutation p.R104S 0.24 tolerated(0.72) benign(0.013) TCGA-63-A5MW-01 16 22926399 22926399 C A HS3ST2 Missense_Mutation p.P207H 0.21 deleterious(0) probably_damaging(1) TCGA-63-A5MW-01 16 30123453 30123453 G A GDPD3 Silent p.A191A 0.13 TCGA-63-A5MW-01 16 31045639 31045639 C G STX4 Silent p.P75P 0.20 TCGA-63-A5MW-01 16 31927555 31927555 G A ZNF267 Missense_Mutation p.C662Y 0.20 deleterious(0) probably_damaging(1) TCGA-63-A5MW-01 16 4790165 4790165 G A C16orf71 Silent p.V96V 0.35 TCGA-63-A5MW-01 16 50359675 50359675 G A BRD7 Missense_Mutation p.L439F 0.28 tolerated(0.09) benign(0.005) TCGA-63-A5MW-01 16 52473701 52473701 G T TOX3 Silent p.T389T 0.46 TCGA-63-A5MW-01 16 56530914 56530914 C A BBS2 Silent p.L625L 0.27 TCGA-63-A5MW-01 16 58564201 58564201 C T CNOT1 Silent p.A2076A 0.48 TCGA-63-A5MW-01 16 61851541 61851541 T C CDH8 Silent p.K373K 0.18 TCGA-63-A5MW-01 16 66424449 66424449 G C CDH5 Missense_Mutation p.E309Q 0.20 tolerated(0.51) benign(0.142) TCGA-63-A5MW-01 16 68056823 68056823 G C DDX28 Missense_Mutation p.Q95E 0.36 tolerated(0.09) benign(0.008) TCGA-63-A5MW-01 16 75665645 75665645 T C KARS Missense_Mutation p.M370V 0.27 deleterious(0.01) possibly_damaging(0.819) TCGA-63-A5MW-01 16 76350420 76350420 G C CNTNAP4 Missense_Mutation p.G41R 0.26 deleterious(0) probably_damaging(1) TCGA-63-A5MW-01 16 76556027 76556027 G C CNTNAP4 Missense_Mutation p.W803C 0.23 deleterious(0) probably_damaging(0.999) TCGA-63-A5MW-01 16 9857464 9857464 G C GRIN2A Missense_Mutation p.L1313V 0.22 deleterious(0) probably_damaging(0.999) TCGA-63-A5MW-01 17 11726231 11726231 G A DNAH9 Silent p.K3042K 0.68 TCGA-63-A5MW-01 17 14095417 14095417 G T COX10 Silent p.L269L 0.23 TCGA-63-A5MW-01 17 1582937 1582937 G C PRPF8 Missense_Mutation p.R419G 0.21 tolerated(0.05) benign(0.076) TCGA-63-A5MW-01 17 15960979 15960979 A T NCOR1 Missense_Mutation p.F2081I 0.59 probably_damaging(0.989) TCGA-63-A5MW-01 17 27051626 27051626 C T TLCD1 Missense_Mutation p.V216M 0.17 tolerated(0.14) benign(0.249) TCGA-63-A5MW-01 17 29631828 29631828 G A EVI2B Missense_Mutation p.T267I 0.15 deleterious(0.01) probably_damaging(0.934) TCGA-63-A5MW-01 17 2966188 2966188 G T OR1D5 Missense_Mutation p.F238L 0.18 tolerated(0.07) probably_damaging(0.999) TCGA-63-A5MW-01 17 30665243 30665243 C G C17orf75 Missense_Mutation p.E159Q 0.17 deleterious(0) possibly_damaging(0.571) TCGA-63-A5MW-01 17 37263736 37263736 C A PLXDC1 Missense_Mutation p.G212V 0.31 deleterious(0) probably_damaging(0.961) TCGA-63-A5MW-01 17 37596702 37596702 C T MED1 Silent p.V112V 0.39 TCGA-63-A5MW-01 17 38562657 38562657 T G TOP2A Missense_Mutation p.E644D 0.16 tolerated(0.17) benign(0.008) TCGA-63-A5MW-01 17 40939402 40939402 G C WNK4 Missense_Mutation p.R528T 0.17 tolerated(0.06) unknown(0) TCGA-63-A5MW-01 17 43473000 43473000 C G ARHGAP27 Splice_Site p.X490_splice 0.13 TCGA-63-A5MW-01 17 48551065 48551065 C T ACSF2 Silent p.I505I 0.40 TCGA-63-A5MW-01 17 56389555 56389555 G A BZRAP1 Missense_Mutation p.A876V 0.22 tolerated(0.32) benign(0.002) TCGA-63-A5MW-01 17 57287450 57287450 G A SMG8 Missense_Mutation p.G13E 0.16 deleterious_low_confidence(0.01) probably_damaging(0.931) TCGA-63-A5MW-01 17 62026786 62026786 C G SCN4A Missense_Mutation p.E986Q 0.21 tolerated(0.07) benign(0.285) TCGA-63-A5MW-01 17 62461568 62461568 G A MILR1 5'Flank 0.52 TCGA-63-A5MW-01 17 64299029 64299029 C T PRKCA Silent p.F20F 0.22 TCGA-63-A5MW-01 17 65156428 65156428 T C HELZ Missense_Mutation p.D709G 0.16 deleterious(0.01) probably_damaging(0.975) TCGA-63-A5MW-01 17 66303696 66303696 C T ARSG Missense_Mutation p.P21L 0.35 tolerated(0.48) benign(0.115) TCGA-63-A5MW-01 17 6683276 6683276 G A FBXO39 Nonsense_Mutation p.W30* 0.25 TCGA-63-A5MW-01 17 7288009 7288009 G A TNK1 Missense_Mutation p.R358H 0.62 deleterious(0.02) probably_damaging(0.94) TCGA-63-A5MW-01 17 72937747 72937747 C T OTOP3 Silent p.F111F 0.41 TCGA-63-A5MW-01 17 73096121 73096121 C A SLC16A5 Missense_Mutation p.S121R 0.07 deleterious(0) probably_damaging(0.984) TCGA-63-A5MW-01 17 73498038 73498038 G T CASKIN2 Silent p.P1039P 0.18 TCGA-63-A5MW-01 17 7579373 7579373 C A TP53 Missense_Mutation p.G105V 0.61 deleterious(0) probably_damaging(1) TCGA-63-A5MW-01 17 79952749 79952749 G T ASPSCR1 Missense_Mutation p.D143Y 0.15 deleterious(0) unknown(0) TCGA-63-A5MW-01 17 80011230 80011230 G C GPS1 Missense_Mutation p.E78D 0.42 tolerated(0.24) benign(0.248) TCGA-63-A5MW-01 18 14184195 14184195 T G ANKRD20A5P Intron 0.11 TCGA-63-A5MW-01 18 14542969 14542969 G T POTEC Missense_Mutation p.S59R 0.06 deleterious_low_confidence(0.02) benign(0.307) TCGA-63-A5MW-01 18 19996594 19996594 G C CTAGE1 Missense_Mutation p.A394G 0.34 deleterious(0.01) benign(0.162) TCGA-63-A5MW-01 18 21396421 21396421 G A LAMA3 Missense_Mutation p.R706Q 0.21 benign(0.183) TCGA-63-A5MW-01 18 21419867 21419867 C T LAMA3 Missense_Mutation p.P1104S 0.51 benign(0.002) TCGA-63-A5MW-01 18 2931411 2931411 G T LPIN2 Silent p.P433P 0.23 TCGA-63-A5MW-01 18 5406916 5406916 C A EPB41L3 Nonsense_Mutation p.E737* 0.11 TCGA-63-A5MW-01 18 6870635 6870635 G A ARHGAP28 Silent p.L127L 0.23 TCGA-63-A5MW-01 18 78005166 78005166 C A PARD6G Missense_Mutation p.K22N 0.39 deleterious(0.01) possibly_damaging(0.466) TCGA-63-A5MW-01 19 10221830 10221830 A G PPAN Intron 0.16 TCGA-63-A5MW-01 19 1080758 1080758 G T HMHA1 Nonsense_Mutation p.G680* 0.07 TCGA-63-A5MW-01 19 1360450 1360450 A G MUM1 Missense_Mutation p.K178R 0.08 tolerated(0.15) benign(0.086) TCGA-63-A5MW-01 19 1391148 1391148 G T NDUFS7 Missense_Mutation p.V147L 0.27 tolerated_low_confidence(0.06) probably_damaging(1) TCGA-63-A5MW-01 19 14090298 14090298 C A RFX1 Silent p.L265L 0.40 TCGA-63-A5MW-01 19 14213652 14213652 G T PRKACA Silent p.L104L 0.12 TCGA-63-A5MW-01 19 16687866 16687866 T A MED26 Missense_Mutation p.T259S 0.66 tolerated(0.82) benign(0.015) TCGA-63-A5MW-01 19 16687867 16687867 C A MED26 Missense_Mutation p.E258D 0.66 tolerated(0.12) benign(0.004) TCGA-63-A5MW-01 19 17003845 17003845 C G CPAMD8 3'UTR 0.10 TCGA-63-A5MW-01 19 17160781 17160781 C - HAUS8 Frame_Shift_Del p.A379Lfs*51 0.15 TCGA-63-A5MW-01 19 17442216 17442216 C T ANO8 Silent p.P197P 0.06 TCGA-63-A5MW-01 19 18499133 18499133 C A GDF15 Silent p.I105I 0.56 TCGA-63-A5MW-01 19 19906403 19906403 A T ZNF506 Missense_Mutation p.V98E 0.14 deleterious(0) possibly_damaging(0.649) TCGA-63-A5MW-01 19 20150002 20150002 G C ZNF682 Intron 0.50 TCGA-63-A5MW-01 19 20728080 20728080 T C ZNF737 Missense_Mutation p.E310G 0.18 deleterious(0.01) benign(0.191) TCGA-63-A5MW-01 19 22364053 22364053 G T ZNF676 Missense_Mutation p.L156I 0.22 tolerated(0.09) probably_damaging(0.942) TCGA-63-A5MW-01 19 2425070 2425070 G C TMPRSS9 Missense_Mutation p.E896Q 0.13 tolerated(0.14) possibly_damaging(0.788) TCGA-63-A5MW-01 19 2733105 2733105 C A SLC39A3 Missense_Mutation p.V197L 0.06 tolerated(0.51) benign(0.01) TCGA-63-A5MW-01 19 36394732 36394732 T A HCST Silent p.A56A 0.20 TCGA-63-A5MW-01 19 39421188 39421188 G A SARS2 Silent p.F63F 0.46 TCGA-63-A5MW-01 19 43258661 43258661 G A PSG8 Missense_Mutation p.A356V 0.15 tolerated(0.08) benign(0.131) TCGA-63-A5MW-01 19 43708355 43708355 A G PSG4 Missense_Mutation p.I38T 0.23 deleterious(0.03) probably_damaging(0.991) TCGA-63-A5MW-01 19 47503646 47503655 TGGCCCACCT - ARHGAP35 Frame_Shift_Del p.W1401* 0.32 TCGA-63-A5MW-01 19 4950949 4950949 C T UHRF1 RNA 0.05 TCGA-63-A5MW-01 19 49972243 49972243 G A ALDH16A1 Silent p.Q749Q 0.39 TCGA-63-A5MW-01 19 52934708 52934708 G T ZNF534 5'UTR 0.14 TCGA-63-A5MW-01 19 54081227 54081227 G T ZNF331 3'UTR 0.24 TCGA-63-A5MW-01 19 54867988 54867988 G A LAIR1 Silent p.D201D 0.24 TCGA-63-A5MW-01 19 55107711 55107711 G T LILRA1 Missense_Mutation p.G339V 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-63-A5MW-01 19 55711728 55711728 G A PTPRH Silent p.T432T 0.39 TCGA-63-A5MW-01 19 57326068 57326068 T C PEG3 Missense_Mutation p.R1248G 0.35 tolerated(0.33) benign(0.101) TCGA-63-A5MW-01 19 58265674 58265674 G T ZNF776 Missense_Mutation p.K392N 0.40 tolerated(0.24) possibly_damaging(0.484) TCGA-63-A5MW-01 19 5843718 5843718 C - FUT3 3'UTR 0.14 TCGA-63-A5MW-01 19 6974677 6974677 C G EMR4P RNA 0.38 TCGA-63-A5MW-01 19 746328 746328 C T PALM Silent p.P226P 0.36 TCGA-63-A5MW-01 19 7812333 7812333 C A CD209 Intron 0.06 TCGA-63-A5MW-01 19 8997484 8997484 C A MUC16 Silent p.L13646L 0.08 TCGA-63-A5MW-01 19 8999040 8999040 C T MUC16 Missense_Mutation p.V13602M 0.30 possibly_damaging(0.789) TCGA-63-A5MW-01 19 9074495 9074495 C A MUC16 Silent p.V4317V 0.11 TCGA-63-A5MW-01 19 9085931 9085931 T C MUC16 Missense_Mutation p.M1962V 0.35 unknown(0) TCGA-63-A5MW-01 19 9529296 9529296 A C ZNF266 5'UTR 0.13 TCGA-63-A5MW-01 1 104161607 104161607 T C AMY2A Silent p.C130C 0.08 TCGA-63-A5MW-01 1 111146241 111146241 C G KCNA2 Missense_Mutation p.K388N 0.21 deleterious(0) probably_damaging(0.996) TCGA-63-A5MW-01 1 112298322 112298322 C G DDX20 5'UTR 0.10 TCGA-63-A5MW-01 1 115454131 115454131 C A SYCP1 Missense_Mutation p.T486N 0.25 tolerated(0.11) benign(0.015) TCGA-63-A5MW-01 1 115454168 115454168 G C SYCP1 Missense_Mutation p.E498D 0.37 deleterious(0) benign(0.122) TCGA-63-A5MW-01 1 118693849 118693849 T C SPAG17 Intron 0.29 TCGA-63-A5MW-01 1 149858717 149858717 G T HIST2H2AC Nonsense_Mutation p.E65* 0.28 TCGA-63-A5MW-01 1 150967906 150967906 A T ANXA9 3'UTR 0.22 TCGA-63-A5MW-01 1 152285177 152285177 G T FLG Missense_Mutation p.Q729K 0.24 probably_damaging(0.989) TCGA-63-A5MW-01 1 152648636 152648636 G T LCE2C Missense_Mutation p.G49C 0.15 tolerated_low_confidence(0.09) unknown(0) TCGA-63-A5MW-01 1 155630119 155630119 G A YY1AP1 Missense_Mutation p.R666W 0.19 deleterious_low_confidence(0.03) benign(0.03) TCGA-63-A5MW-01 1 156202198 156202198 G T PMF1 Missense_Mutation p.Q83H 0.21 deleterious_low_confidence(0.02) probably_damaging(0.986) TCGA-63-A5MW-01 1 156902325 156902325 G C LRRC71 Missense_Mutation p.W517C 0.30 deleterious(0.03) benign(0.006) TCGA-63-A5MW-01 1 158262402 158262402 G C CD1C Missense_Mutation p.W209C 0.23 deleterious(0.02) probably_damaging(0.935) TCGA-63-A5MW-01 1 161199671 161199671 G C NR1I3 Missense_Mutation p.S330R 0.23 deleterious(0) probably_damaging(0.999) TCGA-63-A5MW-01 1 162569137 162569137 T G UAP1 Missense_Mutation p.V501G 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-63-A5MW-01 1 16577430 16577430 T C FBXO42 Missense_Mutation p.N630S 0.28 deleterious_low_confidence(0) possibly_damaging(0.599) TCGA-63-A5MW-01 1 171227193 171227193 A C FMO1 5'UTR 0.15 TCGA-63-A5MW-01 1 171289058 171289058 G C FMO4 Missense_Mutation p.E32Q 0.23 deleterious(0) probably_damaging(0.997) TCGA-63-A5MW-01 1 176564013 176564013 A T PAPPA2 Missense_Mutation p.T425S 0.24 tolerated(0.77) benign(0.113) TCGA-63-A5MW-01 1 176709238 176709238 T A PAPPA2 Missense_Mutation p.S1353T 0.10 deleterious(0.04) benign(0.376) TCGA-63-A5MW-01 1 176852017 176852017 G T ASTN1 Missense_Mutation p.L1114M 0.22 deleterious(0.05) probably_damaging(0.999) TCGA-63-A5MW-01 1 180151427 180151427 G A QSOX1 Missense_Mutation p.R242Q 0.51 deleterious(0.01) possibly_damaging(0.844) TCGA-63-A5MW-01 1 180151428 180151428 G T QSOX1 Silent p.R242R 0.51 TCGA-63-A5MW-01 1 183891454 183891454 C T RGL1 Silent p.V736V 0.29 TCGA-63-A5MW-01 1 19638385 19638385 G A AKR7A2 Silent p.S78S 0.17 TCGA-63-A5MW-01 1 19638386 19638386 C A AKR7A2 Missense_Mutation p.S78I 0.18 tolerated(0.06) benign(0.168) TCGA-63-A5MW-01 1 196744017 196744017 A T CFHR3 Translation_Start_Site p.M1? 0.15 deleterious(0) benign(0.014) TCGA-63-A5MW-01 1 196884191 196884191 A G CFHR4 Missense_Mutation p.Q487R 0.27 deleterious(0.03) benign(0.057) TCGA-63-A5MW-01 1 200969907 200969907 G A KIF21B Silent p.G468G 0.19 TCGA-63-A5MW-01 1 206905783 206905783 G T MAPKAPK2 Intron 0.33 TCGA-63-A5MW-01 1 20975554 20975554 G A PINK1 Missense_Mutation p.G440R 0.19 deleterious(0) probably_damaging(0.997) TCGA-63-A5MW-01 1 216496945 216496945 G T USH2A Missense_Mutation p.P474Q 0.26 benign(0.367) TCGA-63-A5MW-01 1 228246811 228246811 A G WNT3A Missense_Mutation p.Y235C 0.11 deleterious(0) probably_damaging(0.999) TCGA-63-A5MW-01 1 228363211 228363211 G T IBA57 Missense_Mutation p.K356N 0.16 deleterious(0.03) benign(0.395) TCGA-63-A5MW-01 1 231044458 231044458 C T TTC13 Missense_Mutation p.S823N 0.38 tolerated(0.15) benign(0.434) TCGA-63-A5MW-01 1 231059618 231059618 T A TTC13 Nonsense_Mutation p.R595* 0.33 TCGA-63-A5MW-01 1 232538182 232538182 G C SIPA1L2 Missense_Mutation p.Q1660E 0.22 deleterious(0.01) probably_damaging(0.949) TCGA-63-A5MW-01 1 236881188 236881188 A C ACTN2 Silent p.R53R 0.14 TCGA-63-A5MW-01 1 237995903 237995903 G T RYR2 Missense_Mutation p.A4954S 0.38 possibly_damaging(0.739) TCGA-63-A5MW-01 1 240979618 240979618 T C RGS7 Missense_Mutation p.Q261R 0.60 tolerated(0.08) benign(0.045) TCGA-63-A5MW-01 1 244724030 244724030 A T C1orf101 Missense_Mutation p.I364F 0.12 tolerated(0.06) benign(0.331) TCGA-63-A5MW-01 1 247013082 247013082 C G AHCTF1 Missense_Mutation p.E2085Q 0.15 tolerated(0.24) benign(0.077) TCGA-63-A5MW-01 1 247587866 247587866 C G NLRP3 Missense_Mutation p.S374C 0.15 deleterious(0) probably_damaging(1) TCGA-63-A5MW-01 1 247654596 247654596 A G OR2W5 RNA 0.19 TCGA-63-A5MW-01 1 247695490 247695490 C A OR2C3 Silent p.L108L 0.46 TCGA-63-A5MW-01 1 247752262 247752262 G A OR2G2 Missense_Mutation p.E201K 0.20 tolerated(0.19) possibly_damaging(0.685) TCGA-63-A5MW-01 1 26582006 26582006 G T CEP85 Nonsense_Mutation p.E185* 0.22 TCGA-63-A5MW-01 1 27105877 27105877 A C ARID1A Missense_Mutation p.K1830Q 0.22 benign(0.414) TCGA-63-A5MW-01 1 27121133 27121133 G A PIGV Missense_Mutation p.R203H 0.21 deleterious(0) probably_damaging(1) TCGA-63-A5MW-01 1 29475048 29475048 G A SRSF4 Silent p.N453N 0.14 TCGA-63-A5MW-01 1 31468031 31468031 C G PUM1 Missense_Mutation p.G253R 0.15 tolerated(0.15) possibly_damaging(0.748) TCGA-63-A5MW-01 1 34035089 34035089 A G CSMD2 Silent p.S2674S 0.32 TCGA-63-A5MW-01 1 35365802 35365802 T A DLGAP3 Missense_Mutation p.S394C 0.36 deleterious(0) probably_damaging(0.99) TCGA-63-A5MW-01 1 35476507 35476507 G T ZMYM6 Missense_Mutation p.P398H 0.06 deleterious(0.02) benign(0.376) TCGA-63-A5MW-01 1 36645604 36645604 C G MAP7D1 Silent p.L817L 0.07 TCGA-63-A5MW-01 1 36788100 36788100 G A EVA1B Silent p.P98P 0.45 TCGA-63-A5MW-01 1 39799946 39799946 A G MACF1 Intron 0.23 TCGA-63-A5MW-01 1 41298760 41298760 G T KCNQ4 Missense_Mutation p.V530L 0.38 tolerated(1) benign(0.124) TCGA-63-A5MW-01 1 44280588 44280588 G T ST3GAL3 Silent p.L79L 0.25 TCGA-63-A5MW-01 1 46105996 46105996 G C GPBP1L1 Missense_Mutation p.F210L 0.03 tolerated(0.08) possibly_damaging(0.539) TCGA-63-A5MW-01 1 46654595 46654595 C T POMGNT1 Silent p.P681P 0.23 TCGA-63-A5MW-01 1 46810632 46810632 C A NSUN4 Missense_Mutation p.H85N 0.04 tolerated(0.46) benign(0.001) TCGA-63-A5MW-01 1 55064966 55064966 C T ACOT11 Intron 0.27 TCGA-63-A5MW-01 1 57476925 57476925 G T DAB1 Missense_Mutation p.Q489K 0.17 tolerated(0.19) benign(0.019) TCGA-63-A5MW-01 1 6524752 6524752 G A TNFRSF25 Missense_Mutation p.S108L 0.27 deleterious(0) possibly_damaging(0.786) TCGA-63-A5MW-01 20 1299036 1299036 C G SDCBP2 Missense_Mutation p.E51Q 0.17 tolerated(0.16) benign(0.439) TCGA-63-A5MW-01 20 139579 139579 C A DEFB127 Missense_Mutation p.P72T 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-63-A5MW-01 20 14665520 14665520 C A MACROD2 Silent p.P111P 0.11 TCGA-63-A5MW-01 20 20527471 20527471 G C RALGAPA2 Missense_Mutation p.I1054M 0.17 deleterious(0) benign(0.083) TCGA-63-A5MW-01 20 2380368 2380368 C T TGM6 Silent p.A278A 0.11 TCGA-63-A5MW-01 20 2604918 2604918 G T TMC2 Missense_Mutation p.G728W 0.36 deleterious(0) probably_damaging(1) TCGA-63-A5MW-01 20 30602818 30602818 G A CCM2L Missense_Mutation p.D48N 0.19 deleterious(0.04) possibly_damaging(0.714) TCGA-63-A5MW-01 20 31670750 31670750 C T BPIFB4 Missense_Mutation p.S38L 0.06 deleterious_low_confidence(0) benign(0.185) TCGA-63-A5MW-01 20 31996607 31996607 C G SNTA1 Missense_Mutation p.R442P 0.38 tolerated(0.37) benign(0.356) TCGA-63-A5MW-01 20 3295763 3295763 T A C20orf194 Missense_Mutation p.D532V 0.16 deleterious(0) possibly_damaging(0.462) TCGA-63-A5MW-01 20 42203635 42203635 C T SGK2 Silent p.L288L 0.18 TCGA-63-A5MW-01 20 43927047 43927047 A G MATN4 Missense_Mutation p.F397L 0.28 probably_damaging(0.993) TCGA-63-A5MW-01 20 49575048 49575048 C G DPM1 Missense_Mutation p.E5Q 0.18 tolerated_low_confidence(0.08) unknown(0) TCGA-63-A5MW-01 20 57766606 57766606 G A ZNF831 Missense_Mutation p.G178S 0.19 deleterious(0.01) probably_damaging(1) TCGA-63-A5MW-01 20 61917789 61917789 G T ARFGAP1 Missense_Mutation p.L310F 0.17 tolerated(0.38) benign(0.166) TCGA-63-A5MW-01 20 9389797 9389797 C G PLCB4 Missense_Mutation p.C644W 0.35 deleterious(0) probably_damaging(0.979) TCGA-63-A5MW-01 21 30331899 30331899 T A LTN1 Missense_Mutation p.D871V 0.25 deleterious(0) probably_damaging(0.916) TCGA-63-A5MW-01 21 38520907 38520907 A G TTC3 Missense_Mutation p.K693R 0.25 deleterious(0) probably_damaging(0.999) TCGA-63-A5MW-01 21 45714325 45714325 C T AIRE Missense_Mutation p.P481L 0.29 tolerated(0.34) benign(0.015) TCGA-63-A5MW-01 21 45987701 45987701 C T TSPEAR Missense_Mutation p.V91I 0.05 tolerated(0.28) benign(0.004) TCGA-63-A5MW-01 21 46686202 46686202 G T POFUT2 Intron 0.54 TCGA-63-A5MW-01 21 47965050 47965050 C A DIP2A Missense_Mutation p.A726D 0.33 deleterious(0.02) benign(0.023) TCGA-63-A5MW-01 22 19365490 19365490 G A HIRA Silent p.D505D 0.28 TCGA-63-A5MW-01 22 21800854 21800854 G T HIC2 Missense_Mutation p.G557V 0.53 deleterious(0) probably_damaging(0.993) TCGA-63-A5MW-01 22 23165570 23165570 C G IGLV2-8 Missense_Mutation p.D47E 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.861) TCGA-63-A5MW-01 22 24808667 24808667 T C SPECC1L Missense_Mutation p.S1086P 0.42 tolerated(1) benign(0.141) TCGA-63-A5MW-01 22 30688279 30688279 C G TBC1D10A 3'UTR 0.32 TCGA-63-A5MW-01 2 106717492 106717492 G A UXS1 Intron 0.22 TCGA-63-A5MW-01 2 108443443 108443443 C A RGPD4 5'UTR 0.55 TCGA-63-A5MW-01 2 108488648 108488648 G T RGPD4 Silent p.V1396V 0.22 TCGA-63-A5MW-01 2 110342769 110342769 T A SEPT10 Missense_Mutation p.N116I 0.31 deleterious(0) possibly_damaging(0.895) TCGA-63-A5MW-01 2 1168784 1168784 C T SNTG2 Missense_Mutation p.P169L 0.44 deleterious(0.02) probably_damaging(1) TCGA-63-A5MW-01 2 130910454 130910454 C A SMPD4 Missense_Mutation p.A759S 0.32 tolerated(0.15) benign(0.3) TCGA-63-A5MW-01 2 138376040 138376040 G T THSD7B Missense_Mutation p.S1218I 0.29 deleterious(0) unknown(0) TCGA-63-A5MW-01 2 141473658 141473658 C G LRP1B Missense_Mutation p.W1969C 0.37 probably_damaging(0.926) TCGA-63-A5MW-01 2 148602638 148602638 A C ACVR2A 5'UTR 0.26 TCGA-63-A5MW-01 2 169801125 169801125 T A ABCB11 Missense_Mutation p.Q867L 0.46 tolerated(0.08) benign(0.072) TCGA-63-A5MW-01 2 173292662 173292662 C G ITGA6 Missense_Mutation p.A49G 0.46 deleterious(0) probably_damaging(0.994) TCGA-63-A5MW-01 2 179360350 179360350 C T PLEKHA3 Missense_Mutation p.P193L 0.45 tolerated(0.11) benign(0.007) TCGA-63-A5MW-01 2 179399533 179399533 G C TTN Missense_Mutation p.H33937D 0.55 TCGA-63-A5MW-01 2 179702186 179702186 C A CCDC141 Missense_Mutation p.G1254W 0.21 deleterious(0.01) probably_damaging(0.942) TCGA-63-A5MW-01 2 185803496 185803496 C G ZNF804A Missense_Mutation p.L1125V 0.46 deleterious(0.01) benign(0.096) TCGA-63-A5MW-01 2 186696579 186696579 A C FSIP2 Missense_Mutation p.S6942R 0.39 probably_damaging(0.995) TCGA-63-A5MW-01 2 1893121 1893121 C T MYT1L Missense_Mutation p.M802I 0.26 tolerated(0.1) benign(0.037) TCGA-63-A5MW-01 2 189975023 189975023 C A COL5A2 Missense_Mutation p.D84Y 0.40 possibly_damaging(0.907) TCGA-63-A5MW-01 2 190334866 190334866 A C WDR75 Missense_Mutation p.K628N 0.24 tolerated(0.09) benign(0.119) TCGA-63-A5MW-01 2 19553042 19553042 G A OSR1 Silent p.F175F 0.23 TCGA-63-A5MW-01 2 203590980 203590980 A C FAM117B Missense_Mutation p.K285T 0.19 deleterious(0) probably_damaging(0.997) TCGA-63-A5MW-01 2 20453747 20453748 - A PUM2 Frame_Shift_Ins p.A967Cfs*5 0.08 TCGA-63-A5MW-01 2 207572052 207572052 C A DYTN Silent p.L90L 0.23 TCGA-63-A5MW-01 2 210558319 210558319 C T MAP2 Silent p.T475T 0.55 TCGA-63-A5MW-01 2 21224519 21224519 C T APOB 3'UTR 0.18 TCGA-63-A5MW-01 2 21234019 21234019 G A APOB Silent p.I1907I 0.06 TCGA-63-A5MW-01 2 212537915 212537915 C G ERBB4 Missense_Mutation p.D564H 0.23 deleterious(0.01) benign(0.104) TCGA-63-A5MW-01 2 219602959 219602959 C T TTLL4 Missense_Mutation p.A187V 0.47 tolerated(0.19) benign(0.056) TCGA-63-A5MW-01 2 220103496 220103496 C T GLB1L Silent p.Q356Q 0.47 TCGA-63-A5MW-01 2 220402718 220402718 C A ASIC4 Missense_Mutation p.H632N 0.48 deleterious_low_confidence(0) benign(0.403) TCGA-63-A5MW-01 2 226447722 226447722 G T NYAP2 Missense_Mutation p.S530I 0.46 deleterious(0.01) possibly_damaging(0.908) TCGA-63-A5MW-01 2 227872987 227872987 G T COL4A4 Missense_Mutation p.T1519K 0.32 unknown(0) TCGA-63-A5MW-01 2 231110644 231110650 ATGATAC - SP140 Frame_Shift_Del p.Y244* 0.41 TCGA-63-A5MW-01 2 236403442 236403442 G T AGAP1 Nonsense_Mutation p.E38* 0.27 TCGA-63-A5MW-01 2 238280788 238280788 C G COL6A3 Missense_Mutation p.S1291T 0.16 possibly_damaging(0.557) TCGA-63-A5MW-01 2 240981378 240981378 G T PRR21 Missense_Mutation p.S341Y 0.20 tolerated_low_confidence(0.08) unknown(0) TCGA-63-A5MW-01 2 242373624 242373624 A T FARP2 Nonsense_Mutation p.K307* 0.54 TCGA-63-A5MW-01 2 242651415 242651415 A G ING5 Silent p.K137K 0.55 TCGA-63-A5MW-01 2 26204140 26204140 G A KIF3C Missense_Mutation p.S216F 0.26 probably_damaging(0.999) TCGA-63-A5MW-01 2 30381698 30381698 G C YPEL5 Missense_Mutation p.D119H 0.16 deleterious_low_confidence(0) benign(0.341) TCGA-63-A5MW-01 2 33749036 33749036 A - RASGRP3 Frame_Shift_Del p.K203Sfs*5 0.23 TCGA-63-A5MW-01 2 38301944 38301944 C A CYP1B1 Silent p.L196L 0.64 TCGA-63-A5MW-01 2 5832954 5832954 T C SOX11 Missense_Mutation p.L34P 0.29 tolerated(0.31) benign(0.034) TCGA-63-A5MW-01 2 62363011 62363011 C A COMMD1 Missense_Mutation p.Q170K 0.19 tolerated(0.14) benign(0.011) TCGA-63-A5MW-01 2 64161027 64161027 C T VPS54 Missense_Mutation p.E507K 0.17 deleterious(0.02) benign(0.242) TCGA-63-A5MW-01 2 69043348 69043348 C G ARHGAP25 Intron 0.49 TCGA-63-A5MW-01 2 69754423 69754423 T A AAK1 Missense_Mutation p.K300N 0.42 deleterious(0.02) unknown(0) TCGA-63-A5MW-01 2 70463270 70463270 G C TIA1 Missense_Mutation p.L22V 0.15 tolerated(0.14) possibly_damaging(0.854) TCGA-63-A5MW-01 2 71060139 71060139 C G CD207 Missense_Mutation p.K203N 0.10 tolerated(0.33) benign(0.002) TCGA-63-A5MW-01 2 71654289 71654289 G C ZNF638 Missense_Mutation p.D1764H 0.19 deleterious(0) probably_damaging(0.999) TCGA-63-A5MW-01 2 73675212 73675212 C A ALMS1 Missense_Mutation p.Q519K 0.34 benign(0.122) TCGA-63-A5MW-01 2 73678960 73678960 A C ALMS1 Missense_Mutation p.Y1768S 0.33 possibly_damaging(0.858) TCGA-63-A5MW-01 2 73994026 73994026 G T DUSP11 Missense_Mutation p.F229L 0.11 deleterious(0) probably_damaging(0.992) TCGA-63-A5MW-01 2 74689779 74689779 C T MOGS Silent p.K379K 0.14 TCGA-63-A5MW-01 2 80529726 80529726 C A LRRTM1 Nonsense_Mutation p.E407* 0.44 TCGA-63-A5MW-01 2 84518033 84518033 C T FUNDC2P2 RNA 0.53 TCGA-63-A5MW-01 2 86732962 86732962 C G CHMP3 Missense_Mutation p.A241P 0.17 tolerated(0.23) possibly_damaging(0.563) TCGA-63-A5MW-01 2 89339831 89339831 G A IGKV1-12 Missense_Mutation p.P81S 0.16 deleterious(0.03) possibly_damaging(0.709) TCGA-63-A5MW-01 2 90153775 90153775 C A IGKV3D-15 Missense_Mutation p.L11M 0.10 deleterious(0.01) probably_damaging(1) TCGA-63-A5MW-01 2 90260165 90260165 G T IGKV1D-8 Missense_Mutation p.G90W 0.18 deleterious(0) possibly_damaging(0.856) TCGA-63-A5MW-01 2 99449379 99449379 C G KIAA1211L Silent p.R107R 0.26 TCGA-63-A5MW-01 3 10312578 10312578 A G TATDN2 Missense_Mutation p.Y571C 0.43 deleterious(0) probably_damaging(0.994) TCGA-63-A5MW-01 3 107517461 107517461 G T BBX Silent p.T815T 0.33 TCGA-63-A5MW-01 3 108565939 108565939 C A TRAT1 Missense_Mutation p.D59E 0.19 tolerated(0.15) possibly_damaging(0.603) TCGA-63-A5MW-01 3 122512467 122512467 C T HSPBAP1 Missense_Mutation p.E21K 0.14 tolerated(0.35) benign(0.002) TCGA-63-A5MW-01 3 123988033 123988033 G A KALRN Missense_Mutation p.M298I 0.33 tolerated(0.09) benign(0.064) TCGA-63-A5MW-01 3 133356744 133356744 G T TOPBP1 Silent p.L832L 0.17 TCGA-63-A5MW-01 3 1337439 1337439 C A CNTN6 Silent p.A203A 0.19 TCGA-63-A5MW-01 3 134670828 134670828 A C EPHB1 Missense_Mutation p.M247L 0.03 tolerated(1) benign(0.016) TCGA-63-A5MW-01 3 140695204 140695204 G A SLC25A36 Missense_Mutation p.R282H 0.16 deleterious(0.03) benign(0.021) TCGA-63-A5MW-01 3 142280148 142280148 G A ATR Missense_Mutation p.P429L 0.15 tolerated_low_confidence(0.19) benign(0.001) TCGA-63-A5MW-01 3 157177883 157177883 T C VEPH1 Intron 0.15 TCGA-63-A5MW-01 3 164776979 164776979 C A SI Nonsense_Mutation p.G419* 0.17 TCGA-63-A5MW-01 3 172482257 172482257 T G ECT2 Missense_Mutation p.S420A 0.16 deleterious(0.04) probably_damaging(0.989) TCGA-63-A5MW-01 3 172482258 172482258 C T ECT2 Missense_Mutation p.S420F 0.16 deleterious(0) probably_damaging(0.998) TCGA-63-A5MW-01 3 186370176 186370176 G T FETUB Missense_Mutation p.G302V 0.35 deleterious(0) probably_damaging(0.987) TCGA-63-A5MW-01 3 186978603 186978603 T C MASP1 Missense_Mutation p.H158R 0.13 deleterious(0) probably_damaging(0.992) TCGA-63-A5MW-01 3 194118154 194118154 G A GP5 Silent p.F286F 0.06 TCGA-63-A5MW-01 3 197687072 197687072 C G LMLN 5'Flank 0.35 TCGA-63-A5MW-01 3 2928846 2928846 A G CNTN4 Missense_Mutation p.Y293C 0.26 deleterious(0) probably_damaging(1) TCGA-63-A5MW-01 3 33255583 33255583 G T SUSD5 Missense_Mutation p.L43M 0.37 deleterious(0) probably_damaging(0.999) TCGA-63-A5MW-01 3 36527669 36527669 C A STAC Missense_Mutation p.F205L 0.23 deleterious(0.04) probably_damaging(0.995) TCGA-63-A5MW-01 3 36780296 36780296 G T DCLK3 5'UTR 0.28 TCGA-63-A5MW-01 3 39136161 39136161 T C WDR48 Missense_Mutation p.L654P 0.24 deleterious(0) probably_damaging(1) TCGA-63-A5MW-01 3 49898714 49898714 T C CAMKV Missense_Mutation p.Y154C 0.53 deleterious(0.01) probably_damaging(0.989) TCGA-63-A5MW-01 3 49947793 49947793 C A MON1A Missense_Mutation p.A477S 0.45 deleterious(0) possibly_damaging(0.734) TCGA-63-A5MW-01 3 51457988 51457988 G A VPRBP Silent p.L383L 0.16 TCGA-63-A5MW-01 3 51697186 51697186 C G RAD54L2 Missense_Mutation p.P1385R 0.50 deleterious_low_confidence(0.01) possibly_damaging(0.606) TCGA-63-A5MW-01 3 52402932 52402932 G T DNAH1 Nonsense_Mutation p.E1981* 0.32 TCGA-63-A5MW-01 3 56807803 56807803 C T ARHGEF3 Silent p.T78T 0.23 TCGA-63-A5MW-01 3 62484892 62484892 C A CADPS Missense_Mutation p.R884L 0.53 deleterious(0.02) possibly_damaging(0.569) TCGA-63-A5MW-01 3 71803242 71803242 G A GPR27 Silent p.E14E 0.23 TCGA-63-A5MW-01 3 74315734 74315734 G T CNTN3 Missense_Mutation p.L962I 0.18 deleterious(0.03) benign(0.351) TCGA-63-A5MW-01 3 85851319 85851319 C A CADM2 Missense_Mutation p.Q64K 0.08 deleterious(0.01) possibly_damaging(0.609) TCGA-63-A5MW-01 3 87302930 87302930 T A CHMP2B Missense_Mutation p.D200E 0.13 tolerated(0.07) probably_damaging(0.967) TCGA-63-A5MW-01 3 93813001 93813001 G C NSUN3 Missense_Mutation p.E162Q 0.23 deleterious(0) probably_damaging(1) TCGA-63-A5MW-01 4 122053690 122053690 C A TNIP3 3'UTR 0.38 TCGA-63-A5MW-01 4 122250717 122250717 A G QRFPR Missense_Mutation p.C350R 0.40 deleterious(0) benign(0.028) TCGA-63-A5MW-01 4 123192272 123192272 C G KIAA1109 Silent p.T2531T 0.10 TCGA-63-A5MW-01 4 126239153 126239153 C T FAT4 Silent p.S529S 0.39 TCGA-63-A5MW-01 4 146700584 146700584 C A ZNF827 Silent p.V821V 0.29 TCGA-63-A5MW-01 4 155254316 155254316 C A DCHS2 Missense_Mutation p.R516L 0.35 deleterious(0.02) possibly_damaging(0.53) TCGA-63-A5MW-01 4 156632326 156632326 G A GUCY1A3 Missense_Mutation p.G337R 0.29 tolerated(0.43) benign(0.202) TCGA-63-A5MW-01 4 16590401 16590401 T A LDB2 Missense_Mutation p.I155F 0.19 deleterious(0) probably_damaging(1) TCGA-63-A5MW-01 4 1920275 1920275 A G WHSC1 Silent p.T445T 0.44 TCGA-63-A5MW-01 4 20852212 20852212 T G KCNIP4 Missense_Mutation p.K81T 0.21 deleterious(0.03) benign(0.24) TCGA-63-A5MW-01 4 3015556 3015556 G T GRK4 Splice_Site p.X247_splice 0.16 TCGA-63-A5MW-01 4 30921856 30921856 G C PCDH7 Missense_Mutation p.G1086R 0.18 deleterious(0.01) probably_damaging(1) TCGA-63-A5MW-01 4 39482403 39482403 C G LIAS 3'Flank 0.20 TCGA-63-A5MW-01 4 52862281 52862281 T A LRRC66 Missense_Mutation p.T303S 0.25 tolerated(0.06) benign(0.007) TCGA-63-A5MW-01 4 52869420 52869420 G C LRRC66 Missense_Mutation p.P212R 0.33 deleterious(0) probably_damaging(0.974) TCGA-63-A5MW-01 4 5975525 5975525 C A C4orf50 Missense_Mutation p.R564L 0.16 tolerated(0.62) benign(0.014) TCGA-63-A5MW-01 4 66467567 66467568 - G EPHA5 Frame_Shift_Ins p.S235Ffs*11 0.21 TCGA-63-A5MW-01 4 74275112 74275112 G T ALB Missense_Mutation p.A175S 0.14 tolerated(0.05) benign(0.146) TCGA-63-A5MW-01 4 8021391 8021391 G A ABLIM2 Silent p.G459G 0.28 TCGA-63-A5MW-01 4 80828562 80828562 C T ANTXR2 3'UTR 0.34 TCGA-63-A5MW-01 4 8229646 8229646 C - SH3TC1 Frame_Shift_Del p.G743Afs*3 0.12 TCGA-63-A5MW-01 4 88036340 88036340 G T AFF1 Silent p.G785G 0.36 TCGA-63-A5MW-01 4 94411909 94411909 C A GRID2 Missense_Mutation p.R660S 0.28 deleterious(0) probably_damaging(1) TCGA-63-A5MW-01 5 10407309 10407309 C G MARCH6 Silent p.L516L 0.07 TCGA-63-A5MW-01 5 11018150 11018150 T A CTNND2 Missense_Mutation p.K1007M 0.08 deleterious(0) probably_damaging(0.991) TCGA-63-A5MW-01 5 118469758 118469758 T A DMXL1 Silent p.V713V 0.62 TCGA-63-A5MW-01 5 1278779 1278779 C T TERT Missense_Mutation p.V755I 0.03 tolerated(0.74) benign(0.002) TCGA-63-A5MW-01 5 1341871 1341871 T G CLPTM1L Missense_Mutation p.Q123P 0.07 tolerated(0.13) benign(0.094) TCGA-63-A5MW-01 5 137219202 137219202 T C MYOT Missense_Mutation p.S316P 0.28 tolerated(0.09) benign(0.021) TCGA-63-A5MW-01 5 140557910 140557910 C A PCDHB8 Missense_Mutation p.H99N 0.17 deleterious_low_confidence(0.05) benign(0.271) TCGA-63-A5MW-01 5 1494840 1494840 C A LPCAT1 Missense_Mutation p.E156D 0.06 deleterious(0) probably_damaging(0.971) TCGA-63-A5MW-01 5 151170526 151170526 C T G3BP1 Missense_Mutation p.T85M 0.64 deleterious(0.04) benign(0.312) TCGA-63-A5MW-01 5 154396605 154396605 C G KIF4B Silent p.G1062G 0.61 TCGA-63-A5MW-01 5 156381633 156381633 T A TIMD4 Nonsense_Mutation p.K65* 0.29 TCGA-63-A5MW-01 5 159821645 159821645 T C C5orf54 Missense_Mutation p.T285A 0.60 tolerated(0.73) benign(0.002) TCGA-63-A5MW-01 5 1814490 1814490 A G NDUFS6 Missense_Mutation p.Q75R 0.06 deleterious(0.04) probably_damaging(0.917) TCGA-63-A5MW-01 5 19473363 19473363 C A CDH18 Missense_Mutation p.G782V 0.09 deleterious(0) possibly_damaging(0.688) TCGA-63-A5MW-01 5 21461890 21461890 A T GUSBP1 Splice_Site 0.04 TCGA-63-A5MW-01 5 24509891 24509891 T A CDH10 Missense_Mutation p.K347I 0.14 deleterious(0.03) probably_damaging(0.993) TCGA-63-A5MW-01 5 26915885 26915885 G T CDH9 Missense_Mutation p.L126I 0.80 deleterious(0) probably_damaging(0.994) TCGA-63-A5MW-01 5 31431684 31431684 T G DROSHA Silent p.I1048I 0.08 TCGA-63-A5MW-01 5 32090150 32090150 G C PDZD2 Missense_Mutation p.R2199T 0.07 tolerated(0.14) benign(0.004) TCGA-63-A5MW-01 5 33534983 33534983 G A ADAMTS12 Missense_Mutation p.P1521S 0.04 tolerated(0.35) benign(0.079) TCGA-63-A5MW-01 5 3599403 3599403 C A IRX1 Missense_Mutation p.A114E 0.07 deleterious(0.03) benign(0.27) TCGA-63-A5MW-01 5 37371192 37371192 C G NUP155 5'UTR 0.07 TCGA-63-A5MW-01 5 41794818 41794818 G C OXCT1 Missense_Mutation p.S378C 0.03 tolerated(0.12) benign(0.171) TCGA-63-A5MW-01 5 427769 427769 T A AHRR Silent p.A246A 0.08 TCGA-63-A5MW-01 5 56176539 56176539 C T MAP3K1 Missense_Mutation p.R697C 0.22 deleterious(0) probably_damaging(0.999) TCGA-63-A5MW-01 5 64872729 64872729 G A PPWD1 Missense_Mutation p.M331I 0.15 deleterious(0.02) benign(0.257) TCGA-63-A5MW-01 5 82832806 82832806 G T VCAN Intron 0.64 TCGA-63-A5MW-01 5 99871421 99871421 G T FAM174A Missense_Mutation p.A63S 0.50 tolerated_low_confidence(0.16) possibly_damaging(0.694) TCGA-63-A5MW-01 6 105573323 105573323 T A BVES Missense_Mutation p.Y161F 0.28 deleterious(0) probably_damaging(0.98) TCGA-63-A5MW-01 6 109787590 109787590 C A ZBTB24 Missense_Mutation p.D520Y 0.21 deleterious(0.01) possibly_damaging(0.492) TCGA-63-A5MW-01 6 110300828 110300828 T A GPR6 Nonsense_Mutation p.Y171* 0.08 TCGA-63-A5MW-01 6 112493936 112493936 C A LAMA4 Missense_Mutation p.E476D 0.21 tolerated(0.37) benign(0.119) TCGA-63-A5MW-01 6 117121961 117121961 T G GPRC6A Splice_Site p.X446_splice 0.25 TCGA-63-A5MW-01 6 118635428 118635428 C A SLC35F1 3'UTR 0.26 TCGA-63-A5MW-01 6 119669988 119669988 C A MAN1A1 Missense_Mutation p.Q81H 0.27 tolerated(0.54) possibly_damaging(0.497) TCGA-63-A5MW-01 6 123101518 123101518 C T FABP7 Silent p.I52I 0.36 TCGA-63-A5MW-01 6 123319049 123319049 G T CLVS2 Missense_Mutation p.D43Y 0.50 deleterious(0) probably_damaging(0.999) TCGA-63-A5MW-01 6 123319064 123319064 C A CLVS2 Missense_Mutation p.R48S 0.27 tolerated(0.16) possibly_damaging(0.715) TCGA-63-A5MW-01 6 126080378 126080378 G A HEY2 Silent p.P148P 0.40 TCGA-63-A5MW-01 6 128643414 128643414 C T PTPRK Missense_Mutation p.E89K 0.25 tolerated(0.05) benign(0.003) TCGA-63-A5MW-01 6 132198170 132198170 C T ENPP1 Missense_Mutation p.H588Y 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-63-A5MW-01 6 143085990 143085990 T G HIVEP2 Missense_Mutation p.T1822P 0.12 deleterious(0) probably_damaging(1) TCGA-63-A5MW-01 6 147704088 147704088 C G STXBP5 Missense_Mutation p.A1123G 0.22 tolerated(0.08) benign(0.003) TCGA-63-A5MW-01 6 151281542 151281542 A G MTHFD1L Silent p.A645A 0.19 TCGA-63-A5MW-01 6 152560705 152560705 G A SYNE1 Missense_Mutation p.A6677V 0.08 probably_damaging(0.997) TCGA-63-A5MW-01 6 159692416 159692416 C T FNDC1 Missense_Mutation p.T1876I 0.36 deleterious(0) probably_damaging(0.998) TCGA-63-A5MW-01 6 160454084 160454084 A T IGF2R Nonsense_Mutation p.K386* 0.23 TCGA-63-A5MW-01 6 160961151 160961151 G A LPA Missense_Mutation p.H1887Y 0.06 tolerated(0.3) benign(0.209) TCGA-63-A5MW-01 6 168465610 168465610 G T FRMD1 Missense_Mutation p.H197N 0.50 deleterious(0.04) possibly_damaging(0.776) TCGA-63-A5MW-01 6 170594342 170594342 C T DLL1 Silent p.T344T 0.07 TCGA-63-A5MW-01 6 26216675 26216675 A G HIST1H2BG Missense_Mutation p.F66S 0.35 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-63-A5MW-01 6 26250480 26250480 C A HIST1H3F Silent p.V118V 0.06 TCGA-63-A5MW-01 6 28540821 28540821 C A SCAND3 Missense_Mutation p.A949S 0.50 tolerated(0.2) probably_damaging(0.994) TCGA-63-A5MW-01 6 30955122 30955122 C A MUC21 Silent p.A390A 0.32 TCGA-63-A5MW-01 6 31079870 31079870 G A C6orf15 Missense_Mutation p.P89L 0.37 tolerated(0.07) probably_damaging(0.958) TCGA-63-A5MW-01 6 31631889 31631889 G T GPANK1 Missense_Mutation p.L123M 0.48 deleterious(0.01) probably_damaging(1) TCGA-63-A5MW-01 6 31695330 31695330 T C DDAH2 Missense_Mutation p.N244S 0.12 tolerated(0.32) possibly_damaging(0.608) TCGA-63-A5MW-01 6 32008260 32008260 C T CYP21A2 Silent p.D339D 0.15 TCGA-63-A5MW-01 6 35716512 35716512 C A ARMC12 Silent p.A323A 0.30 TCGA-63-A5MW-01 6 35888253 35888253 G A SRPK1 Silent p.A22A 0.09 TCGA-63-A5MW-01 6 42175871 42175871 G A MRPS10 3'UTR 0.13 TCGA-63-A5MW-01 6 44371724 44371724 A G CDC5L Missense_Mutation p.R240G 0.34 tolerated(0.11) benign(0.001) TCGA-63-A5MW-01 6 46660195 46660195 G A TDRD6 Missense_Mutation p.E1444K 0.14 deleterious(0) possibly_damaging(0.826) TCGA-63-A5MW-01 6 51612944 51612944 G C PKHD1 Missense_Mutation p.A3157G 0.11 deleterious(0.01) probably_damaging(0.944) TCGA-63-A5MW-01 6 52329740 52329740 G C EFHC1 Missense_Mutation p.E322Q 0.09 tolerated(0.09) possibly_damaging(0.677) TCGA-63-A5MW-01 6 56044743 56044743 G C COL21A1 Silent p.L91L 0.24 TCGA-63-A5MW-01 6 57048635 57048635 G T BAG2 Nonsense_Mutation p.E95* 0.09 TCGA-63-A5MW-01 6 70092795 70092795 A T BAI3 Nonsense_Mutation p.R1450* 0.20 TCGA-63-A5MW-01 6 72678750 72678750 C A RIMS1 Missense_Mutation p.P77T 0.22 tolerated(0.24) benign(0.09) TCGA-63-A5MW-01 6 76744371 76744371 G T IMPG1 Missense_Mutation p.S145R 0.44 deleterious(0) probably_damaging(0.999) TCGA-63-A5MW-01 6 84567020 84567020 T C RIPPLY2 Missense_Mutation p.L100P 0.25 deleterious(0) probably_damaging(1) TCGA-63-A5MW-01 6 87725768 87725768 C T HTR1E Missense_Mutation p.T239I 0.41 tolerated(0.29) possibly_damaging(0.507) TCGA-63-A5MW-01 6 88049970 88049970 G T SMIM8 Missense_Mutation p.R91L 0.12 deleterious(0.01) possibly_damaging(0.893) TCGA-63-A5MW-01 6 97339156 97339156 C G NDUFAF4 Missense_Mutation p.E118Q 0.32 deleterious(0) benign(0.2) TCGA-63-A5MW-01 7 100198332 100198332 C A FBXO24 Missense_Mutation p.A556D 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.665) TCGA-63-A5MW-01 7 100357423 100357423 C G ZAN Silent p.T1217T 0.22 TCGA-63-A5MW-01 7 100377074 100377074 G T ZAN Missense_Mutation p.Q2107H 0.09 unknown(0) TCGA-63-A5MW-01 7 100490900 100490900 G A ACHE Silent p.H318H 0.10 TCGA-63-A5MW-01 7 100677195 100677195 C A MUC17 Missense_Mutation p.S833Y 0.09 unknown(0) TCGA-63-A5MW-01 7 100682906 100682906 G T MUC17 Nonsense_Mutation p.E2737* 0.03 TCGA-63-A5MW-01 7 100696410 100696410 C A MUC17 Missense_Mutation p.S4416Y 0.06 unknown(0) TCGA-63-A5MW-01 7 100732354 100732354 C T TRIM56 Silent p.L587L 0.07 TCGA-63-A5MW-01 7 102881098 102881098 G T DPY19L2P2 Intron 0.09 TCGA-63-A5MW-01 7 102920402 102920402 T C DPY19L2P2 RNA 0.14 TCGA-63-A5MW-01 7 104753557 104753557 A C KMT2E Missense_Mutation p.H1785P 0.10 deleterious_low_confidence(0) benign(0.227) TCGA-63-A5MW-01 7 11485814 11485814 C T THSD7A Missense_Mutation p.E980K 0.20 deleterious(0.05) benign(0.097) TCGA-63-A5MW-01 7 11509586 11509586 G A THSD7A Missense_Mutation p.P763L 0.38 deleterious(0) possibly_damaging(0.791) TCGA-63-A5MW-01 7 120655857 120655857 G A CPED1 Missense_Mutation p.E130K 0.21 deleterious(0.03) possibly_damaging(0.907) TCGA-63-A5MW-01 7 142606764 142606764 T C TRPV5 Splice_Site p.X597_splice 0.17 TCGA-63-A5MW-01 7 143085744 143085744 G C ZYX Missense_Mutation p.C436S 0.30 deleterious(0) probably_damaging(0.999) TCGA-63-A5MW-01 7 151292521 151292521 A C PRKAG2 Missense_Mutation p.S258R 0.34 tolerated(0.29) benign(0.002) TCGA-63-A5MW-01 7 154561207 154561207 C G DPP6 Missense_Mutation p.R322G 0.38 tolerated(0.14) possibly_damaging(0.884) TCGA-63-A5MW-01 7 154862820 154862820 T G HTR5A-AS1 Missense_Mutation p.K65T 0.33 deleterious_low_confidence(0.04) possibly_damaging(0.607) TCGA-63-A5MW-01 7 18066457 18066457 G C PRPS1L1 Missense_Mutation p.P317A 0.18 deleterious(0.01) possibly_damaging(0.506) TCGA-63-A5MW-01 7 19765230 19765230 G T TMEM196 Silent p.S122S 0.14 TCGA-63-A5MW-01 7 27185462 27185462 C A HOXA6 Nonsense_Mutation p.E173* 0.18 TCGA-63-A5MW-01 7 27284724 27284724 G C EVX1 Missense_Mutation p.S162T 0.14 tolerated(0.45) benign(0.046) TCGA-63-A5MW-01 7 5340092 5340092 C A SLC29A4 Missense_Mutation p.L417M 0.44 deleterious(0.05) probably_damaging(0.967) TCGA-63-A5MW-01 7 6155125 6155125 A G USP42 Missense_Mutation p.Y138C 0.23 deleterious(0) probably_damaging(0.999) TCGA-63-A5MW-01 7 70886017 70886017 C A WBSCR17 Missense_Mutation p.S296R 0.19 deleterious(0) possibly_damaging(0.502) TCGA-63-A5MW-01 7 71177089 71177089 C T WBSCR17 Silent p.S585S 0.22 TCGA-63-A5MW-01 7 73768243 73768243 G T CLIP2 Missense_Mutation p.V238L 0.53 tolerated(1) possibly_damaging(0.556) TCGA-63-A5MW-01 7 75221379 75221379 T C HIP1 Missense_Mutation p.M127V 0.24 deleterious(0.01) possibly_damaging(0.771) TCGA-63-A5MW-01 7 8791350 8791350 G T NXPH1 Missense_Mutation p.C256F 0.48 deleterious(0) probably_damaging(1) TCGA-63-A5MW-01 7 94259097 94259097 C T SGCE Missense_Mutation p.V56I 0.69 tolerated(0.06) probably_damaging(0.998) TCGA-63-A5MW-01 7 99669830 99669830 C T ZNF3 Missense_Mutation p.E93K 0.07 tolerated(0.07) benign(0.171) TCGA-63-A5MW-01 7 99711924 99711924 G C TAF6 Intron 0.08 TCGA-63-A5MW-01 7 99725011 99725011 G A MBLAC1 5'UTR 0.85 TCGA-63-A5MW-01 8 101075961 101075961 G C RGS22 Missense_Mutation p.F345L 0.10 tolerated(0.15) possibly_damaging(0.632) TCGA-63-A5MW-01 8 110454364 110454364 C G PKHD1L1 Missense_Mutation p.P1445A 0.18 tolerated(0.23) possibly_damaging(0.504) TCGA-63-A5MW-01 8 113504747 113504747 C A CSMD3 Missense_Mutation p.G1750V 0.58 tolerated(0.75) probably_damaging(0.987) TCGA-63-A5MW-01 8 125499208 125499208 G A RNF139 Missense_Mutation p.V440I 0.07 tolerated(0.45) possibly_damaging(0.531) TCGA-63-A5MW-01 8 133142062 133142062 T A KCNQ3 Missense_Mutation p.E689V 0.17 tolerated(0.07) possibly_damaging(0.556) TCGA-63-A5MW-01 8 144811212 144811212 C G FAM83H Missense_Mutation p.G221A 0.11 deleterious(0) probably_damaging(1) TCGA-63-A5MW-01 8 145740458 145740458 T G RECQL4 Splice_Site p.X495_splice 0.09 TCGA-63-A5MW-01 8 24199263 24199263 A T ADAM28 Missense_Mutation p.D608V 0.28 deleterious(0.01) benign(0.021) TCGA-63-A5MW-01 8 25178567 25178567 A C DOCK5 Missense_Mutation p.E538D 0.31 tolerated(0.45) benign(0.028) TCGA-63-A5MW-01 8 48736481 48736481 G C PRKDC Missense_Mutation p.Q2953E 0.07 benign(0.287) TCGA-63-A5MW-01 8 51442784 51442784 A T SNTG1 Missense_Mutation p.S172C 0.13 deleterious(0) probably_damaging(0.945) TCGA-63-A5MW-01 8 52321890 52321890 C A PXDNL Missense_Mutation p.R765L 0.27 tolerated(0.34) possibly_damaging(0.627) TCGA-63-A5MW-01 8 53126810 53126810 G C ST18 Missense_Mutation p.A3G 0.28 deleterious(0.01) benign(0.001) TCGA-63-A5MW-01 8 57219280 57219280 C A SDR16C5 Missense_Mutation p.C222F 0.22 deleterious(0) possibly_damaging(0.614) TCGA-63-A5MW-01 8 70980503 70980503 C A PRDM14 Nonsense_Mutation p.E292* 0.14 TCGA-63-A5MW-01 8 82713736 82713736 T A SNX16 Missense_Mutation p.D344V 0.17 deleterious_low_confidence(0) unknown(0) TCGA-63-A5MW-01 8 88885242 88885242 C A DCAF4L2 Missense_Mutation p.V320L 0.29 tolerated(1) benign(0.001) TCGA-63-A5MW-01 8 89053728 89053728 G T MMP16 Missense_Mutation p.H595Q 0.15 tolerated(0.31) probably_damaging(0.999) TCGA-63-A5MW-01 8 9437691 9437691 A C TNKS Silent p.V232V 0.20 TCGA-63-A5MW-01 8 94746349 94746349 T G RBM12B Silent p.R764R 0.20 TCGA-63-A5MW-01 8 94746353 94746353 G A RBM12B Silent p.H762H 0.09 TCGA-63-A5MW-01 8 94934323 94934323 C A PDP1 Silent p.I37I 0.15 TCGA-63-A5MW-01 8 97797403 97797403 A G CPQ Missense_Mutation p.Q93R 0.29 tolerated(0.49) benign(0.001) TCGA-63-A5MW-01 8 98290014 98290014 C A TSPYL5 Missense_Mutation p.R20L 0.31 deleterious(0.01) unknown(0) TCGA-63-A5MW-01 8 99047939 99047939 G T MATN2 Nonstop_Mutation p.*957Lext*9 0.08 TCGA-63-A5MW-01 9 116260321 116260321 G A RGS3 Missense_Mutation p.M286I 0.15 tolerated_low_confidence(0.39) benign(0) TCGA-63-A5MW-01 9 117068869 117068869 A T COL27A1 Missense_Mutation p.S1670C 0.64 unknown(0) TCGA-63-A5MW-01 9 125438069 125438069 A G OR1L3 Missense_Mutation p.I221V 0.36 deleterious(0) probably_damaging(0.999) TCGA-63-A5MW-01 9 131261332 131261332 A G ODF2 Missense_Mutation p.K743R 0.26 tolerated(0.36) benign(0.279) TCGA-63-A5MW-01 9 133907491 133907491 C A LAMC3 Missense_Mutation p.D246E 0.31 deleterious(0.02) probably_damaging(0.997) TCGA-63-A5MW-01 9 140129056 140129056 C T SLC34A3 Intron 0.59 TCGA-63-A5MW-01 9 18680559 18680559 T C ADAMTSL1 Intron 0.32 TCGA-63-A5MW-01 9 33294489 33294489 G T NFX1 Missense_Mutation p.G33W 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.664) TCGA-63-A5MW-01 9 36107996 36107996 G A RECK Missense_Mutation p.D534N 0.68 deleterious(0.02) benign(0.444) TCGA-63-A5MW-01 9 43625099 43625099 G T SPATA31A6 Nonsense_Mutation p.Y1196* 0.28 TCGA-63-A5MW-01 9 71851917 71851917 C G TJP2 Missense_Mutation p.R713G 0.56 deleterious(0) probably_damaging(1) TCGA-63-A5MW-01 9 77400901 77400901 T A TRPM6 Silent p.T936T 0.29 TCGA-63-A5MW-01 9 78938099 78938099 G A PCSK5 Missense_Mutation p.D1385N 0.24 tolerated(0.27) benign(0.099) TCGA-63-A5MW-01 9 88257832 88257832 G T AGTPBP1 Missense_Mutation p.N364K 0.22 tolerated(0.08) benign(0.139) TCGA-63-A5MW-01 9 95050506 95050506 G T IARS Missense_Mutation p.L60I 0.69 deleterious(0) probably_damaging(1) TCGA-63-A5MW-01 X 101581410 101581410 C A NXF2 Silent p.A621A 0.23 TCGA-63-A5MW-01 X 102755163 102755163 C T RAB40A Silent p.V174V 0.65 TCGA-63-A5MW-01 X 106418390 106418390 G C NUP62CL 5'UTR 0.13 TCGA-63-A5MW-01 X 109441736 109441736 T A AMMECR1 3'UTR 0.61 TCGA-63-A5MW-01 X 123615623 123615623 T C TENM1 Missense_Mutation p.D1303G 0.72 deleterious(0.02) probably_damaging(0.999) TCGA-63-A5MW-01 X 136649834 136649834 C - ZIC3 Frame_Shift_Del p.P329Hfs*79 0.36 TCGA-63-A5MW-01 X 138708912 138708912 C T MCF2 Missense_Mutation p.D208N 0.48 tolerated(0.09) benign(0.011) TCGA-63-A5MW-01 X 140994519 140994519 C A MAGEC1 Silent p.L443L 0.42 TCGA-63-A5MW-01 X 153059743 153059743 C A IDH3G Silent p.A13A 0.26 TCGA-63-A5MW-01 X 153072756 153072756 C G PDZD4 Missense_Mutation p.R122P 0.30 deleterious(0) possibly_damaging(0.813) TCGA-63-A5MW-01 X 17746837 17746837 G T NHS Missense_Mutation p.V1410L 0.73 deleterious(0.04) benign(0.167) TCGA-63-A5MW-01 X 29301321 29301321 G A IL1RAPL1 Missense_Mutation p.A117T 0.95 tolerated(1) benign(0.084) TCGA-63-A5MW-01 X 3242841 3242841 C T MXRA5 Silent p.E295E 0.38 TCGA-63-A5MW-01 X 34148820 34148820 G T FAM47A Silent p.R526R 0.40 TCGA-63-A5MW-01 X 34148859 34148859 G T FAM47A Silent p.R513R 0.22 TCGA-63-A5MW-01 X 55289756 55289756 C G PAGE3 Missense_Mutation p.E41Q 0.36 tolerated(0.06) benign(0) TCGA-63-A5MW-01 X 71856164 71856164 T C PHKA1 Missense_Mutation p.Y511C 0.70 deleterious(0) probably_damaging(1) TCGA-63-A5MW-01 X 74288863 74288863 C G ABCB7 Missense_Mutation p.R547S 0.25 tolerated(0.15) benign(0.073) TCGA-63-A5MY-01 10 18280095 18280095 A T SLC39A12 Nonsense_Mutation p.K429* 0.47 TCGA-63-A5MY-01 10 26505652 26505652 G T GAD2 5'UTR 0.29 TCGA-63-A5MY-01 10 27323898 27323898 C T ANKRD26 Missense_Mutation p.E1161K 0.30 deleterious(0) probably_damaging(0.941) TCGA-63-A5MY-01 10 70231555 70231555 C T DNA2 Missense_Mutation p.A109T 0.35 tolerated(0.1) benign(0.234) TCGA-63-A5MY-01 10 85994041 85994041 G T LRIT1 Missense_Mutation p.T228N 0.41 deleterious(0.03) benign(0.14) TCGA-63-A5MY-01 10 96322466 96322466 G T HELLS Missense_Mutation p.A118S 0.32 tolerated(0.76) benign(0.001) TCGA-63-A5MY-01 11 11292805 11292805 G A GALNT18 Silent p.R570R 0.68 TCGA-63-A5MY-01 11 122805678 122805678 G T C11orf63 Missense_Mutation p.G510V 0.33 deleterious(0) benign(0.028) TCGA-63-A5MY-01 11 123810926 123810926 T A OR4D5 Silent p.S201S 0.38 TCGA-63-A5MY-01 11 124440725 124440725 T A OR8A1 Missense_Mutation p.F254Y 0.36 deleterious(0.01) benign(0.4) TCGA-63-A5MY-01 11 124857058 124857058 G - CCDC15 Frame_Shift_Del p.E313Kfs*25 0.26 TCGA-63-A5MY-01 11 125873976 125873976 C A CDON Intron 0.28 TCGA-63-A5MY-01 11 134252878 134252878 G C B3GAT1 Missense_Mutation p.S215C 0.44 deleterious(0) probably_damaging(0.994) TCGA-63-A5MY-01 11 19246819 19246819 T C E2F8 Silent p.P790P 0.64 TCGA-63-A5MY-01 11 20657939 20657939 C A SLC6A5 Missense_Mutation p.L571I 0.80 deleterious(0.01) probably_damaging(0.997) TCGA-63-A5MY-01 11 22747969 22747969 G C GAS2 Silent p.S133S 0.57 TCGA-63-A5MY-01 11 26619930 26619930 T A ANO3 Missense_Mutation p.F489Y 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-63-A5MY-01 11 4406621 4406621 G C TRIM21 Missense_Mutation p.P441R 0.78 tolerated(0.07) probably_damaging(0.971) TCGA-63-A5MY-01 11 45672248 45672248 C T CHST1 Missense_Mutation p.V76M 0.06 deleterious(0.04) probably_damaging(0.954) TCGA-63-A5MY-01 11 5566610 5566610 C A OR52H1 Silent p.V48V 0.67 TCGA-63-A5MY-01 11 57145218 57145218 C A PRG3 Missense_Mutation p.C200F 0.38 deleterious(0) probably_damaging(0.998) TCGA-63-A5MY-01 11 57427482 57427482 C A CLP1 Missense_Mutation p.F178L 0.42 deleterious(0.01) benign(0.163) TCGA-63-A5MY-01 11 59282885 59282885 C G OR4D9 Missense_Mutation p.P167R 0.39 deleterious(0) probably_damaging(1) TCGA-63-A5MY-01 11 61018636 61018636 C T PGA5 Silent p.G350G 0.37 TCGA-63-A5MY-01 11 64136069 64136069 C T RPS6KA4 Missense_Mutation p.R444C 0.48 deleterious(0) benign(0.305) TCGA-63-A5MY-01 11 6477306 6477306 A G TRIM3 Missense_Mutation p.I510T 0.72 deleterious(0) possibly_damaging(0.595) TCGA-63-A5MY-01 11 66062110 66062110 C T TMEM151A Silent p.D131D 0.32 TCGA-63-A5MY-01 11 67163219 67163219 C T RAD9A Missense_Mutation p.P161L 0.24 tolerated(0.57) benign(0.017) TCGA-63-A5MY-01 11 72415320 72415320 G A ARAP1 Silent p.P623P 0.41 TCGA-63-A5MY-01 11 76895654 76895654 G T MYO7A Missense_Mutation p.G1133W 0.60 deleterious(0) probably_damaging(0.989) TCGA-63-A5MY-01 11 82443447 82443447 C G FAM181B 3'UTR 0.42 TCGA-63-A5MY-01 11 89028499 89028499 G C TYR Missense_Mutation p.E519Q 0.38 tolerated(0.08) benign(0.022) TCGA-63-A5MY-01 11 8959568 8959568 G A ASCL3 Silent p.S47S 0.72 TCGA-63-A5MY-01 12 101674928 101674928 A T UTP20 Missense_Mutation p.N27I 0.43 deleterious(0) probably_damaging(0.99) TCGA-63-A5MY-01 12 108626505 108626505 C T WSCD2 Intron 0.62 TCGA-63-A5MY-01 12 109519765 109519765 C T USP30 Missense_Mutation p.L270F 0.39 deleterious(0) probably_damaging(1) TCGA-63-A5MY-01 12 113388755 113388755 C G OAS3 Missense_Mutation p.S544R 0.45 tolerated(0.07) benign(0.013) TCGA-63-A5MY-01 12 1137515 1137516 AC - ERC1 Frame_Shift_Del p.T150Nfs*16 0.29 TCGA-63-A5MY-01 12 113836578 113836578 G C SDS Missense_Mutation p.S89R 0.50 tolerated(0.19) benign(0.043) TCGA-63-A5MY-01 12 130184724 130184724 G T TMEM132D Missense_Mutation p.S200Y 0.50 deleterious(0) possibly_damaging(0.601) TCGA-63-A5MY-01 12 132404088 132404088 A T ULK1 Missense_Mutation p.D919V 0.34 deleterious(0.03) possibly_damaging(0.751) TCGA-63-A5MY-01 12 4920526 4920526 C G KCNA6 Missense_Mutation p.S440W 0.33 deleterious(0) probably_damaging(1) TCGA-63-A5MY-01 12 49443669 49443669 C A KMT2D Silent p.G1234G 0.39 TCGA-63-A5MY-01 12 70934668 70934668 A G PTPRB Missense_Mutation p.V1855A 0.35 tolerated(0.22) benign(0.138) TCGA-63-A5MY-01 12 70953387 70953387 G A PTPRB Missense_Mutation p.L1484F 0.39 tolerated(0.71) benign(0.309) TCGA-63-A5MY-01 12 77253337 77253337 G A CSRP2 Silent p.I165I 0.41 TCGA-63-A5MY-01 12 86276078 86276078 T A NTS Nonsense_Mutation p.Y146* 0.36 TCGA-63-A5MY-01 12 88472949 88472949 G A CEP290 Missense_Mutation p.R1762C 0.57 possibly_damaging(0.785) TCGA-63-A5MY-01 13 19751699 19751699 C G TUBA3C Missense_Mutation p.G142R 0.08 deleterious_low_confidence(0) probably_damaging(1) TCGA-63-A5MY-01 14 100317197 100317197 C G EML1 Missense_Mutation p.S25R 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-63-A5MY-01 14 104642774 104642774 G A KIF26A Missense_Mutation p.A1217T 0.28 tolerated(1) benign(0.001) TCGA-63-A5MY-01 14 105408525 105408525 G T AHNAK2 Missense_Mutation p.N4421K 0.44 benign(0.293) TCGA-63-A5MY-01 14 105412409 105412409 C T AHNAK2 Missense_Mutation p.G3127R 0.66 possibly_damaging(0.8) TCGA-63-A5MY-01 14 21990778 21990778 C T SALL2 3'UTR 0.37 TCGA-63-A5MY-01 14 24682698 24682698 T G CHMP4A Missense_Mutation p.K26T 0.47 tolerated_low_confidence(0.16) benign(0.054) TCGA-63-A5MY-01 14 50583055 50583055 C A VCPKMT Silent p.L72L 0.31 TCGA-63-A5MY-01 14 65220269 65220269 C G SPTB Missense_Mutation p.K2196N 0.33 deleterious(0) probably_damaging(0.996) TCGA-63-A5MY-01 15 48780649 48780649 C A FBN1 Missense_Mutation p.G1042C 0.65 probably_damaging(0.999) TCGA-63-A5MY-01 15 49426203 49426203 C T COPS2 Missense_Mutation p.R280Q 0.78 deleterious(0.02) probably_damaging(0.928) TCGA-63-A5MY-01 15 74625112 74625112 G A CCDC33 Missense_Mutation p.A622T 0.44 tolerated(0.46) benign(0.016) TCGA-63-A5MY-01 15 90768269 90768269 T C SEMA4B Missense_Mutation p.F422L 0.04 deleterious(0) possibly_damaging(0.481) TCGA-63-A5MY-01 16 10729774 10729774 G A TEKT5 Missense_Mutation p.T363M 0.39 deleterious(0.01) possibly_damaging(0.606) TCGA-63-A5MY-01 16 1822486 1822486 G C MRPS34 Missense_Mutation p.I131M 0.04 tolerated(0.12) possibly_damaging(0.466) TCGA-63-A5MY-01 16 66956162 66956162 C T RRAD Silent p.V248V 0.66 TCGA-63-A5MY-01 16 85132694 85132694 A G FAM92B 3'UTR 0.85 TCGA-63-A5MY-01 17 1543323 1543323 G A SCARF1 Missense_Mutation p.P341L 0.77 deleterious(0.05) benign(0.012) TCGA-63-A5MY-01 17 43922395 43922395 G T SPPL2C Silent p.L41L 0.36 TCGA-63-A5MY-01 17 61473202 61473202 G A TANC2 Silent p.T976T 0.38 TCGA-63-A5MY-01 17 7577120 7577120 C G TP53 Missense_Mutation p.R273P 0.92 deleterious(0) probably_damaging(0.999) TCGA-63-A5MY-01 17 79495710 79495710 C G FSCN2 Missense_Mutation p.D51E 0.57 tolerated(0.15) probably_damaging(0.96) TCGA-63-A5MY-01 17 79970071 79970071 G A ASPSCR1 Intron 0.42 TCGA-63-A5MY-01 17 80054329 80054329 C A FASN Splice_Site 0.59 TCGA-63-A5MY-01 18 14757837 14757837 G A ANKRD30B Missense_Mutation p.C214Y 0.70 tolerated(0.17) benign(0.03) TCGA-63-A5MY-01 18 18531342 18531342 T A ROCK1 3'UTR 0.35 TCGA-63-A5MY-01 18 22804643 22804643 A G ZNF521 Missense_Mutation p.L1080P 0.41 deleterious(0) benign(0.336) TCGA-63-A5MY-01 18 30260525 30260525 A G KLHL14 Silent p.L426L 0.36 TCGA-63-A5MY-01 19 1462126 1462126 C T APC2 Silent p.G601G 0.59 TCGA-63-A5MY-01 19 3778992 3778992 C A MATK Missense_Mutation p.G400W 0.67 deleterious(0.02) probably_damaging(0.972) TCGA-63-A5MY-01 19 38643532 38643532 G A SIPA1L3 Missense_Mutation p.D1196N 0.27 tolerated(0.11) benign(0.206) TCGA-63-A5MY-01 19 41727862 41727862 C G AXL Missense_Mutation p.Q163E 0.38 tolerated(0.58) benign(0.014) TCGA-63-A5MY-01 19 47492890 47492890 C A ARHGAP35 Missense_Mutation p.L1332M 0.38 deleterious(0) probably_damaging(0.999) TCGA-63-A5MY-01 19 49547248 49547248 C T CGB5 5'UTR 0.55 TCGA-63-A5MY-01 19 50462666 50462666 C A SIGLEC11 Silent p.A336A 0.35 TCGA-63-A5MY-01 19 51170753 51170753 C T SHANK1 Silent p.L1488L 0.69 TCGA-63-A5MY-01 19 53770180 53770180 T C VN1R4 Missense_Mutation p.T247A 0.40 tolerated(0.17) benign(0.121) TCGA-63-A5MY-01 19 53993655 53993655 G C ZNF813 Missense_Mutation p.E57Q 0.34 tolerated(0.07) possibly_damaging(0.477) TCGA-63-A5MY-01 19 54313389 54313389 C A NLRP12 Missense_Mutation p.R508S 0.35 tolerated(0.27) benign(0.08) TCGA-63-A5MY-01 19 55047008 55047008 G T KIR3DX1 Missense_Mutation p.V185L 0.49 deleterious(0.04) benign(0.35) TCGA-63-A5MY-01 19 55445964 55445964 G C NLRP7 Missense_Mutation p.N788K 0.43 deleterious(0) probably_damaging(0.982) TCGA-63-A5MY-01 19 56538687 56538687 G T NLRP5 Missense_Mutation p.G363V 0.38 deleterious(0) probably_damaging(0.979) TCGA-63-A5MY-01 19 57641392 57641392 C A USP29 Missense_Mutation p.P450H 0.31 deleterious(0.02) probably_damaging(0.944) TCGA-63-A5MY-01 19 57888756 57888756 G A ZNF547 Missense_Mutation p.G138R 0.36 tolerated(0.49) benign(0.026) TCGA-63-A5MY-01 19 9204836 9204836 A T OR1M1 Missense_Mutation p.N306Y 0.81 tolerated(0.58) benign(0.068) TCGA-63-A5MY-01 1 104120131 104120131 G T AMY2B Missense_Mutation p.G374V 0.35 deleterious(0) probably_damaging(0.998) TCGA-63-A5MY-01 1 104120132 104120132 G A AMY2B Silent p.G374G 0.36 TCGA-63-A5MY-01 1 113098593 113098593 C T ST7L Silent p.L431L 0.39 TCGA-63-A5MY-01 1 118166583 118166583 G A FAM46C Missense_Mutation p.D365N 0.68 tolerated(0.14) probably_damaging(0.984) TCGA-63-A5MY-01 1 142713653 142713653 G T RP11-417J8.6 RNA 0.13 TCGA-63-A5MY-01 1 150931695 150931695 T C SETDB1 Missense_Mutation p.M791T 0.29 tolerated(0.25) probably_damaging(0.993) TCGA-63-A5MY-01 1 152732895 152732895 C A KPRP Silent p.P277P 0.36 TCGA-63-A5MY-01 1 158325935 158325935 T G CD1E Intron 0.40 TCGA-63-A5MY-01 1 175365862 175365862 G A TNR Missense_Mutation p.T353M 0.40 deleterious(0) probably_damaging(0.986) TCGA-63-A5MY-01 1 18809248 18809248 G A KLHDC7A Silent p.L591L 0.37 TCGA-63-A5MY-01 1 197396780 197396780 G C CRB1 Silent p.L775L 0.48 TCGA-63-A5MY-01 1 205074256 205074256 C T RBBP5 Missense_Mutation p.D87N 0.54 deleterious(0) probably_damaging(0.977) TCGA-63-A5MY-01 1 205238185 205238185 C T TMCC2 Silent p.T285T 0.39 TCGA-63-A5MY-01 1 237948228 237948228 A C RYR2 Missense_Mutation p.M4406L 0.50 benign(0) TCGA-63-A5MY-01 1 246810570 246810570 G C CNST Missense_Mutation p.G356A 0.38 tolerated(0.05) benign(0.035) TCGA-63-A5MY-01 1 34663016 34663016 A T C1orf94 Missense_Mutation p.N171Y 0.39 deleterious(0.01) possibly_damaging(0.52) TCGA-63-A5MY-01 1 35577721 35577721 T A ZMYM1 Missense_Mutation p.V379D 0.28 tolerated_low_confidence(0.07) benign(0.022) TCGA-63-A5MY-01 1 53555650 53555650 G T SLC1A7 Intron 0.44 TCGA-63-A5MY-01 1 62734005 62734005 G - KANK4 Frame_Shift_Del p.Q729Rfs*30 0.26 TCGA-63-A5MY-01 1 72748275 72748275 G A NEGR1 5'UTR 0.27 TCGA-63-A5MY-01 1 84403601 84403601 G C TTLL7 Missense_Mutation p.I274M 0.45 deleterious(0) probably_damaging(0.953) TCGA-63-A5MY-01 20 10019039 10019039 G T ANKEF1 Missense_Mutation p.K30N 0.25 tolerated(0.09) possibly_damaging(0.677) TCGA-63-A5MY-01 20 31620838 31620838 C G BPIFB6 Missense_Mutation p.A49G 0.17 tolerated(0.17) benign(0.055) TCGA-63-A5MY-01 20 39741497 39741497 C A TOP1 Silent p.R462R 0.22 TCGA-63-A5MY-01 20 40944401 40944401 A G PTPRT Missense_Mutation p.Y701H 0.26 deleterious(0) probably_damaging(0.941) TCGA-63-A5MY-01 20 43248315 43248315 A G ADA 3'UTR 0.87 TCGA-63-A5MY-01 22 18378069 18378069 T C MICAL3 Missense_Mutation p.N477S 0.70 benign(0.081) TCGA-63-A5MY-01 22 30733841 30733841 T A SF3A1 Missense_Mutation p.M597L 0.85 tolerated(0.78) benign(0) TCGA-63-A5MY-01 22 50717331 50717331 C A PLXNB2 Missense_Mutation p.R1500L 0.67 deleterious(0) probably_damaging(0.995) TCGA-63-A5MY-01 2 101541735 101541735 G A NPAS2 Missense_Mutation p.G54R 0.44 tolerated(0.06) probably_damaging(0.994) TCGA-63-A5MY-01 2 102000132 102000132 G T CREG2 Silent p.P158P 0.36 TCGA-63-A5MY-01 2 105912909 105912909 T C TGFBRAP1 Silent p.E314E 0.40 TCGA-63-A5MY-01 2 121747428 121747428 C A GLI2 Missense_Mutation p.P1313Q 0.33 tolerated_low_confidence(0.21) possibly_damaging(0.467) TCGA-63-A5MY-01 2 137814259 137814259 G - THSD7B Frame_Shift_Del p.G137Dfs*13 0.32 TCGA-63-A5MY-01 2 137988770 137988770 C A THSD7B Missense_Mutation p.T627N 0.41 tolerated(0.1) benign(0.316) TCGA-63-A5MY-01 2 141093346 141093346 C T LRP1B Nonsense_Mutation p.W3985* 0.40 TCGA-63-A5MY-01 2 162280049 162280049 G T TBR1 Missense_Mutation p.G454W 0.38 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-63-A5MY-01 2 178096626 178096626 C A NFE2L2 Missense_Mutation p.M235I 0.33 tolerated(0.28) benign(0.002) TCGA-63-A5MY-01 2 183088691 183088691 G A PDE1A Missense_Mutation p.H242Y 0.52 deleterious(0) possibly_damaging(0.908) TCGA-63-A5MY-01 2 189912988 189912988 C A COL5A2 Missense_Mutation p.G1050C 0.52 unknown(0) TCGA-63-A5MY-01 2 189912989 189912989 C A COL5A2 Splice_Site p.X1050_splice 0.53 TCGA-63-A5MY-01 2 189932952 189932952 C T COL5A2 Silent p.T434T 0.47 TCGA-63-A5MY-01 2 21236056 21236056 C A APOB Missense_Mutation p.D1398Y 0.28 possibly_damaging(0.781) TCGA-63-A5MY-01 2 234106785 234106785 C A INPP5D Missense_Mutation p.P901H 0.65 deleterious(0) probably_damaging(1) TCGA-63-A5MY-01 2 29449918 29449918 C A ALK Silent p.V979V 0.45 TCGA-63-A5MY-01 2 37594429 37594429 G T QPCT Nonsense_Mutation p.E201* 0.67 TCGA-63-A5MY-01 2 90044157 90044157 G T IGKV2D-24 Missense_Mutation p.Q26H 0.46 deleterious(0.02) possibly_damaging(0.528) TCGA-63-A5MY-01 2 90108998 90108998 G T IGKV6D-41 Missense_Mutation p.G88V 0.35 deleterious(0) probably_damaging(0.997) TCGA-63-A5MY-01 2 97276523 97276523 C G KANSL3 Missense_Mutation p.R420P 0.44 deleterious(0) probably_damaging(0.999) TCGA-63-A5MY-01 3 113331025 113331025 G T SIDT1 Missense_Mutation p.M650I 0.41 deleterious(0) possibly_damaging(0.619) TCGA-63-A5MY-01 3 126153130 126153130 C A CCDC37 Missense_Mutation p.H512N 0.26 tolerated(0.07) possibly_damaging(0.889) TCGA-63-A5MY-01 3 147128360 147128360 C A ZIC1 Missense_Mutation p.A154E 0.66 tolerated(0.05) possibly_damaging(0.874) TCGA-63-A5MY-01 3 155271949 155271949 A C PLCH1 Missense_Mutation p.V357G 0.38 deleterious(0.01) probably_damaging(0.976) TCGA-63-A5MY-01 3 183547315 183547315 A T PARL 3'UTR 0.22 TCGA-63-A5MY-01 3 26751551 26751551 A - LRRC3B Frame_Shift_Del p.N131Mfs*6 0.13 TCGA-63-A5MY-01 3 38802780 38802780 C A SCN10A Missense_Mutation p.L262F 0.68 deleterious(0) probably_damaging(1) TCGA-63-A5MY-01 3 44879786 44879786 A T KIF15 Missense_Mutation p.D1064V 0.73 deleterious(0) probably_damaging(0.999) TCGA-63-A5MY-01 3 48699156 48699156 G T CELSR3 Silent p.A304A 0.60 TCGA-63-A5MY-01 3 74474010 74474010 G - CNTN3 Frame_Shift_Del p.P147Hfs*52 0.28 TCGA-63-A5MY-01 3 97705731 97705731 A C GABRR3 Silent p.S400S 0.45 TCGA-63-A5MY-01 4 102019615 102019615 C A PPP3CA Missense_Mutation p.C184F 0.36 deleterious(0.01) probably_damaging(0.971) TCGA-63-A5MY-01 4 104640730 104640730 C G TACR3 Missense_Mutation p.G35R 0.41 tolerated_low_confidence(0.14) benign(0.182) TCGA-63-A5MY-01 4 119253015 119253015 G A PRSS12 Missense_Mutation p.T276M 0.45 tolerated(0.05) benign(0.007) TCGA-63-A5MY-01 4 126402751 126402751 G T FAT4 Missense_Mutation p.R4225L 0.20 benign(0.211) TCGA-63-A5MY-01 4 55130016 55130016 G C PDGFRA Missense_Mutation p.V184L 0.42 tolerated(0.51) benign(0.003) TCGA-63-A5MY-01 4 56301570 56301570 G A CLOCK 3'UTR 0.34 TCGA-63-A5MY-01 5 1034405 1034405 C T NKD2 Missense_Mutation p.T129M 0.53 deleterious(0) probably_damaging(0.932) TCGA-63-A5MY-01 5 10988231 10988231 G C CTNND2 Missense_Mutation p.A1112G 0.23 tolerated(0.34) benign(0.001) TCGA-63-A5MY-01 5 1253902 1253902 C A TERT Missense_Mutation p.A1114S 0.21 deleterious(0.02) benign(0.094) TCGA-63-A5MY-01 5 154275794 154275794 G T GEMIN5 Missense_Mutation p.T1152N 0.79 tolerated(0.49) benign(0.002) TCGA-63-A5MY-01 5 16701797 16701797 T C MYO10 Missense_Mutation p.M903V 0.21 tolerated_low_confidence(0.19) benign(0) TCGA-63-A5MY-01 5 179674362 179674362 C A MAPK9 Intron 0.76 TCGA-63-A5MY-01 5 35910040 35910040 C G CAPSL Silent p.G151G 0.15 TCGA-63-A5MY-01 5 45262407 45262407 C T HCN1 Silent p.P763P 0.26 TCGA-63-A5MY-01 5 61681425 61681425 G A KIF2A 3'UTR 0.73 TCGA-63-A5MY-01 5 6750571 6750571 A C PAPD7 Silent p.S355S 0.27 TCGA-63-A5MY-01 6 109814549 109814549 C T AK9 3'UTR 0.37 TCGA-63-A5MY-01 6 132874571 132874571 G T TAAR8 Missense_Mutation p.R247I 0.45 tolerated(0.1) benign(0.378) TCGA-63-A5MY-01 6 134312286 134312286 G C SLC2A12 3'UTR 0.38 TCGA-63-A5MY-01 6 136597231 136597231 G T BCLAF1 Missense_Mutation p.H478N 0.15 tolerated(0.07) benign(0.216) TCGA-63-A5MY-01 6 161587319 161587319 C A AGPAT4 Silent p.L103L 0.82 TCGA-63-A5MY-01 6 20115564 20115564 A T MBOAT1 Missense_Mutation p.M344K 0.46 deleterious(0.05) benign(0.297) TCGA-63-A5MY-01 6 29142258 29142258 C A OR2J2 Silent p.V282V 0.36 TCGA-63-A5MY-01 6 30632649 30632649 G A DHX16 Nonsense_Mutation p.Q416* 0.32 TCGA-63-A5MY-01 6 31785497 31785497 C A HSPA1A 3'UTR 0.38 TCGA-63-A5MY-01 6 69944940 69944940 G A BAI3 Missense_Mutation p.G875D 0.50 tolerated(0.16) probably_damaging(1) TCGA-63-A5MY-01 6 70034819 70034819 G T BAI3 Missense_Mutation p.C957F 0.36 deleterious(0.03) probably_damaging(0.998) TCGA-63-A5MY-01 6 76407211 76407211 A G SENP6 Missense_Mutation p.I756V 0.32 tolerated(0.09) probably_damaging(0.985) TCGA-63-A5MY-01 6 79668203 79668203 T C PHIP Silent p.L1257L 0.42 TCGA-63-A5MY-01 6 87725612 87725612 C A HTR1E Missense_Mutation p.T187K 0.45 deleterious(0) probably_damaging(1) TCGA-63-A5MY-01 6 90276751 90276751 A G ANKRD6 Missense_Mutation p.Y19C 0.36 deleterious(0.01) probably_damaging(0.926) TCGA-63-A5MY-01 6 90503881 90503881 C T MDN1 Silent p.E200E 0.24 TCGA-63-A5MY-01 6 96999771 96999771 G C UFL1 Missense_Mutation p.V653L 0.31 tolerated(1) benign(0.001) TCGA-63-A5MY-01 7 127343268 127343268 T C SND1 Missense_Mutation p.F244S 0.20 deleterious(0) probably_damaging(0.985) TCGA-63-A5MY-01 7 128323074 128323074 C T FAM71F2 Missense_Mutation p.P264L 0.61 tolerated(0.57) benign(0.006) TCGA-63-A5MY-01 7 131829924 131829924 G T PLXNA4 Missense_Mutation p.H1727N 0.28 deleterious(0) probably_damaging(0.998) TCGA-63-A5MY-01 7 139657491 139657491 C T TBXAS1 Silent p.D296D 0.54 TCGA-63-A5MY-01 7 143807095 143807095 C A OR2A2 Nonsense_Mutation p.C140* 0.53 TCGA-63-A5MY-01 7 14661082 14661082 G T DGKB Missense_Mutation p.S403Y 0.42 deleterious(0.03) benign(0.212) TCGA-63-A5MY-01 7 148978748 148978748 G T ZNF783 Missense_Mutation p.G319C 0.15 tolerated(0.06) possibly_damaging(0.551) TCGA-63-A5MY-01 7 156931920 156931920 G T UBE3C 5'UTR 0.70 TCGA-63-A5MY-01 7 18868826 18868826 G T HDAC9 Nonsense_Mutation p.E789* 0.37 TCGA-63-A5MY-01 7 27142013 27142013 G C HOXA2 Nonsense_Mutation p.S36* 0.34 TCGA-63-A5MY-01 7 39243892 39243892 T C POU6F2 Silent p.S83S 0.37 TCGA-63-A5MY-01 7 43477602 43477602 C T HECW1 Nonsense_Mutation p.Q268* 0.41 TCGA-63-A5MY-01 7 72727346 72727346 G T TRIM50 Silent p.S345S 0.75 TCGA-63-A5MY-01 7 81374400 81374400 C T HGF Missense_Mutation p.G221D 0.37 deleterious(0) probably_damaging(0.997) TCGA-63-A5MY-01 7 82584932 82584932 C G PCLO Missense_Mutation p.L1779F 0.41 unknown(0) TCGA-63-A5MY-01 7 90226034 90226034 T G AC002456.2 5'Flank 0.24 TCGA-63-A5MY-01 7 934984 934984 C T GET4 Silent p.T303T 0.34 TCGA-63-A5MY-01 7 94913486 94913486 G C PPP1R9A Missense_Mutation p.Q1151H 0.47 deleterious(0.02) benign(0.005) TCGA-63-A5MY-01 7 94944788 94944788 A C PON1 Silent p.P72P 0.30 TCGA-63-A5MY-01 7 99818569 99818569 C T PVRIG Nonsense_Mutation p.Q226* 0.32 TCGA-63-A5MY-01 8 110984576 110984576 G A KCNV1 Missense_Mutation p.T301M 0.22 tolerated(0.26) possibly_damaging(0.828) TCGA-63-A5MY-01 8 114111113 114111113 G A CSMD3 Silent p.N263N 0.81 TCGA-63-A5MY-01 8 139611067 139611067 G C COL22A1 Silent p.G1420G 0.26 TCGA-63-A5MY-01 8 37821732 37821732 A T ADRB3 3'UTR 0.15 TCGA-63-A5MY-01 8 69104653 69104653 A G PREX2 Silent p.A1499A 0.78 TCGA-63-A5MY-01 8 86027660 86027660 C T LRRCC1 Silent p.P257P 0.32 TCGA-63-A5MY-01 9 115422281 115422281 G C KIAA1958 Missense_Mutation p.E695Q 0.65 deleterious_low_confidence(0.04) possibly_damaging(0.857) TCGA-63-A5MY-01 9 135944126 135944126 C G CEL Missense_Mutation p.I324M 0.23 tolerated(0.15) benign(0.02) TCGA-63-A5MY-01 9 138557559 138557559 G C LCN9 Missense_Mutation p.G146R 0.58 tolerated(0.05) possibly_damaging(0.725) TCGA-63-A5MY-01 9 27173276 27173276 G C TEK Missense_Mutation p.G273R 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-63-A5MY-01 9 27202815 27202815 T C TEK Intron 0.21 TCGA-63-A5MY-01 X 118222118 118222118 G T KIAA1210 Silent p.S1025S 0.82 TCGA-63-A5MY-01 X 132159828 132159828 T A USP26 Missense_Mutation p.K807N 0.84 tolerated(0.13) possibly_damaging(0.73) TCGA-63-A5MY-01 X 139586718 139586718 T G SOX3 Missense_Mutation p.S170R 0.79 deleterious(0.02) probably_damaging(0.993) TCGA-63-A5MY-01 X 151900206 151900206 T C MAGEA12 Missense_Mutation p.T199A 0.87 tolerated(0.08) benign(0.033) TCGA-63-A5MY-01 X 48164232 48164232 T A SSX9 RNA 0.80 TCGA-63-A5MY-01 X 5821469 5821469 C A NLGN4X Missense_Mutation p.R417L 0.80 deleterious(0.03) probably_damaging(0.985) TCGA-66-2727-01 10 116060044 116060044 G C AFAP1L2 Missense_Mutation p.I622M 0.41 tolerated(0.08) possibly_damaging(0.482) TCGA-66-2727-01 10 129237453 129237453 C T DOCK1 Silent p.S1720S 0.38 TCGA-66-2727-01 10 135027589 135027589 G T KNDC1 Missense_Mutation p.W1547L 0.54 deleterious(0) probably_damaging(0.999) TCGA-66-2727-01 10 37508523 37508523 A G ANKRD30A Missense_Mutation p.M1239V 0.28 tolerated(0.06) benign(0.002) TCGA-66-2727-01 10 54048748 54048748 G A PRKG1 Silent p.K630K 0.29 TCGA-66-2727-01 10 60546717 60546717 A T BICC1 Missense_Mutation p.H141L 0.26 deleterious(0.01) possibly_damaging(0.681) TCGA-66-2727-01 10 61835211 61835211 C A ANK3 Missense_Mutation p.A1810S 0.18 possibly_damaging(0.587) TCGA-66-2727-01 10 71075707 71075707 C T HK1 Intron 0.31 TCGA-66-2727-01 10 85982088 85982088 C A LRIT2 Missense_Mutation p.G414V 0.49 deleterious(0) probably_damaging(1) TCGA-66-2727-01 11 1031985 1031985 C G MUC6 Missense_Mutation p.D62H 0.36 unknown(0) TCGA-66-2727-01 11 123811094 123811094 C A OR4D5 Silent p.V257V 0.40 TCGA-66-2727-01 11 129722407 129722407 A G TMEM45B Silent p.P10P 0.25 TCGA-66-2727-01 11 130343024 130343024 G T ADAMTS15 Missense_Mutation p.G721W 0.55 deleterious(0) probably_damaging(0.968) TCGA-66-2727-01 11 32439126 32439126 T G WT1 Missense_Mutation p.K316T 0.12 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-66-2727-01 11 4471455 4471455 G A OR52K2 Missense_Mutation p.V296I 0.21 tolerated(0.09) benign(0.008) TCGA-66-2727-01 11 49175867 49175867 C T FOLH1 Missense_Mutation p.A601T 0.28 deleterious(0.02) possibly_damaging(0.797) TCGA-66-2727-01 11 5068652 5068652 G T OR52J3 Missense_Mutation p.Q299H 0.33 deleterious(0.01) possibly_damaging(0.738) TCGA-66-2727-01 11 56143109 56143109 A C OR8U1 Missense_Mutation p.I4L 0.24 tolerated(0.5) benign(0.001) TCGA-66-2727-01 11 56237681 56237681 T C OR5M3 Missense_Mutation p.Q98R 0.29 deleterious(0) probably_damaging(0.999) TCGA-66-2727-01 11 59828787 59828787 G - MS4A3 Frame_Shift_Del 0.17 TCGA-66-2727-01 11 62288412 62288412 C T AHNAK Missense_Mutation p.V4493I 0.29 benign(0.101) TCGA-66-2727-01 11 6635769 6635769 G C TPP1 3'UTR 0.35 TCGA-66-2727-01 11 66392591 66392591 C - RBM14 Frame_Shift_Del p.P416Hfs*56 0.24 TCGA-66-2727-01 11 67275064 67275064 T A CDK2AP2 Missense_Mutation p.Q60L 0.33 deleterious(0.04) possibly_damaging(0.482) TCGA-66-2727-01 11 86152228 86152228 G A ME3 3'UTR 0.33 TCGA-66-2727-01 11 89017960 89017960 C T TYR Nonsense_Mutation p.R402* 0.35 TCGA-66-2727-01 12 102076422 102076422 C A MYBPC1 Missense_Mutation p.F1151L 0.44 tolerated_low_confidence(0.72) benign(0) TCGA-66-2727-01 12 106889912 106889912 A C POLR3B Silent p.P931P 0.15 TCGA-66-2727-01 12 11506883 11506883 G T PRB1 Missense_Mutation p.P52T 0.25 deleterious_low_confidence(0.01) unknown(0) TCGA-66-2727-01 12 118199246 118199246 C A KSR2 Nonsense_Mutation p.E186* 0.15 TCGA-66-2727-01 12 130897317 130897317 C A RIMBP2 Missense_Mutation p.D890Y 0.40 deleterious(0) probably_damaging(1) TCGA-66-2727-01 12 15654661 15654661 G A PTPRO Missense_Mutation p.D257N 0.24 tolerated_low_confidence(0.12) benign(0.002) TCGA-66-2727-01 12 21472458 21472458 C T SLCO1A2 Intron 0.16 TCGA-66-2727-01 12 56436328 56436328 T G RPS26 Missense_Mutation p.I41M 0.11 deleterious(0) probably_damaging(0.992) TCGA-66-2727-01 12 60169075 60169075 G C SLC16A7 Silent p.L333L 0.14 TCGA-66-2727-01 12 77449774 77449780 TGCTGTC - E2F7 Frame_Shift_Del p.R75Kfs*11 0.13 TCGA-66-2727-01 12 81624881 81624881 G T ACSS3 Missense_Mutation p.Q520H 0.19 tolerated(0.06) benign(0.025) TCGA-66-2727-01 12 81833821 81833821 C A PPFIA2 Missense_Mutation p.R192M 0.46 deleterious(0) probably_damaging(0.993) TCGA-66-2727-01 12 86199109 86199109 C A RASSF9 Nonsense_Mutation p.G227* 0.48 TCGA-66-2727-01 12 8813482 8813482 A T MFAP5 Missense_Mutation p.L24Q 0.12 tolerated(0.16) probably_damaging(0.912) TCGA-66-2727-01 12 9305507 9305507 G T PZP Missense_Mutation p.S1345Y 0.41 tolerated(0.4) benign(0.006) TCGA-66-2727-01 12 97150340 97150340 G T C12orf55 Nonsense_Mutation p.G2649* 0.29 TCGA-66-2727-01 13 103515036 103515036 G A BIVM-ERCC5 Missense_Mutation p.A939T 0.13 tolerated_low_confidence(0.22) benign(0.001) TCGA-66-2727-01 13 41706151 41706151 C A KBTBD6 Missense_Mutation p.R166L 0.48 deleterious(0.01) probably_damaging(1) TCGA-66-2727-01 13 45768460 45768460 C G KCTD4 Missense_Mutation p.R81S 0.33 deleterious(0.01) probably_damaging(0.993) TCGA-66-2727-01 14 20528227 20528227 A G OR4L1 Silent p.L8L 0.40 TCGA-66-2727-01 14 45369749 45369749 T G C14orf28 Silent p.A37A 0.27 TCGA-66-2727-01 14 96864475 96864475 G A AK7 Missense_Mutation p.D57N 0.16 deleterious(0.05) benign(0.347) TCGA-66-2727-01 15 101933589 101933589 C A PCSK6 Missense_Mutation p.G345V 0.38 deleterious(0) probably_damaging(1) TCGA-66-2727-01 15 20657655 20657655 C A HERC2P3 RNA 0.25 TCGA-66-2727-01 15 24921171 24921171 C A NPAP1 Silent p.R53R 0.33 TCGA-66-2727-01 15 25219581 25219581 G A SNRPN 5'UTR 0.35 TCGA-66-2727-01 15 40462841 40462841 T C BUB1B Missense_Mutation p.Y115H 0.28 deleterious(0.03) probably_damaging(0.977) TCGA-66-2727-01 15 54305912 54305912 A G UNC13C Missense_Mutation p.K271R 0.41 tolerated_low_confidence(0.22) benign(0.025) TCGA-66-2727-01 15 77092589 77092589 C A SCAPER Missense_Mutation p.G204V 0.29 deleterious(0.03) possibly_damaging(0.448) TCGA-66-2727-01 15 77328172 77328172 G A PSTPIP1 Missense_Mutation p.E339K 0.32 tolerated(0.11) benign(0.016) TCGA-66-2727-01 16 20430682 20430682 G A ACSM5 Missense_Mutation p.C183Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-66-2727-01 16 27518417 27518417 C A GTF3C1 Nonsense_Mutation p.E435* 0.26 TCGA-66-2727-01 16 2816580 2816580 C T SRRM2 Silent p.R2017R 0.15 TCGA-66-2727-01 16 53524121 53524121 G A RBL2 Missense_Mutation p.S1110N 0.15 tolerated(0.18) benign(0.042) TCGA-66-2727-01 16 825541 825541 C - MSLNL Frame_Shift_Del p.G407Afs*43 0.38 TCGA-66-2727-01 16 9856971 9856971 T A GRIN2A 3'UTR 0.30 TCGA-66-2727-01 17 21204224 21204224 G A MAP2K3 Silent p.R106R 0.16 TCGA-66-2727-01 17 35591902 35591902 G A ACACA Silent p.V1078V 0.22 TCGA-66-2727-01 17 3785617 3785617 C A CAMKK1 Missense_Mutation p.A245S 0.54 tolerated_low_confidence(0.73) benign(0.009) TCGA-66-2727-01 17 45369758 45369758 G A ITGB3 Missense_Mutation p.R505H 0.44 tolerated(0.22) benign(0.001) TCGA-66-2727-01 17 45447834 45447834 A G EFCAB13 Missense_Mutation p.I279M 0.33 deleterious(0) possibly_damaging(0.841) TCGA-66-2727-01 17 73736921 73736921 G T ITGB4 Missense_Mutation p.Q866H 0.21 deleterious(0.05) benign(0.003) TCGA-66-2727-01 17 7577580 7577580 T C TP53 Missense_Mutation p.Y234C 0.64 deleterious(0) probably_damaging(0.992) TCGA-66-2727-01 17 79671373 79671373 G T SLC25A10 Missense_Mutation p.K58N 0.25 deleterious_low_confidence(0) benign(0.435) TCGA-66-2727-01 17 80401645 80401645 C G C17orf62 3'UTR 0.41 TCGA-66-2727-01 18 21422480 21422480 G T LAMA3 Missense_Mutation p.R1153L 0.32 benign(0.002) TCGA-66-2727-01 18 60223502 60223502 C T ZCCHC2 Silent p.S460S 0.25 TCGA-66-2727-01 19 1438379 1438379 C A RPS15 5'Flank 0.21 TCGA-66-2727-01 19 17927797 17927797 C A INSL3 Missense_Mutation p.W119C 0.30 deleterious_low_confidence(0.04) possibly_damaging(0.666) TCGA-66-2727-01 19 17983413 17983413 T A SLC5A5 Silent p.L95L 0.67 TCGA-66-2727-01 19 19337671 19337671 C T NCAN Silent p.F483F 0.45 TCGA-66-2727-01 19 19823162 19823162 T C ZNF14 Missense_Mutation p.K310E 0.20 deleterious(0) probably_damaging(0.998) TCGA-66-2727-01 19 21366712 21366712 A G ZNF431 Missense_Mutation p.R536G 0.10 tolerated(1) benign(0) TCGA-66-2727-01 19 22154642 22154642 G T ZNF208 Missense_Mutation p.A1065D 0.21 deleterious(0.01) possibly_damaging(0.51) TCGA-66-2727-01 19 37149214 37149214 G A ZNF461 Silent p.N41N 0.24 TCGA-66-2727-01 19 40722081 40722081 C T TTC9B Missense_Mutation p.V237I 0.20 deleterious_low_confidence(0.02) probably_damaging(0.935) TCGA-66-2727-01 19 40747908 40747908 C A AKT2 Silent p.R170R 0.34 TCGA-66-2727-01 19 4538521 4538521 A C LRG1 Missense_Mutation p.W159G 0.39 tolerated(0.09) benign(0.192) TCGA-66-2727-01 19 53209454 53209454 T C ZNF611 Missense_Mutation p.K285R 0.37 deleterious(0.04) probably_damaging(0.994) TCGA-66-2727-01 19 54238188 54238188 C T MIR518D RNA 0.16 TCGA-66-2727-01 19 54760477 54760477 G T LILRB5 Missense_Mutation p.P77H 0.25 deleterious(0.05) benign(0.241) TCGA-66-2727-01 19 9025609 9025609 C A MUC16 Missense_Mutation p.C12282F 0.26 benign(0.066) TCGA-66-2727-01 1 149916922 149916922 C G OTUD7B Missense_Mutation p.D456H 0.45 deleterious(0.01) possibly_damaging(0.907) TCGA-66-2727-01 1 156571241 156571241 C G GPATCH4 5'UTR 0.25 TCGA-66-2727-01 1 158548923 158548923 G C OR10X1 Missense_Mutation p.T256S 0.19 deleterious(0) possibly_damaging(0.903) TCGA-66-2727-01 1 158735980 158735980 G A OR6N1 Missense_Mutation p.R165C 0.26 deleterious(0.01) possibly_damaging(0.846) TCGA-66-2727-01 1 178063816 178063816 G T RASAL2 Missense_Mutation p.W63C 0.38 deleterious_low_confidence(0) benign(0.128) TCGA-66-2727-01 1 185277948 185277948 A G IVNS1ABP Missense_Mutation p.M114T 0.39 deleterious(0) possibly_damaging(0.906) TCGA-66-2727-01 1 196684863 196684863 G A CFH Missense_Mutation p.G554S 0.11 tolerated(0.18) benign(0.12) TCGA-66-2727-01 1 196965332 196965332 G C CFHR5 Splice_Site p.X324_splice 0.13 TCGA-66-2727-01 1 200825173 200825175 GTT - CAMSAP2 In_Frame_Del p.C1312del 0.09 TCGA-66-2727-01 1 205589867 205589867 C A ELK4 Missense_Mutation p.G103C 0.25 deleterious(0.02) probably_damaging(0.926) TCGA-66-2727-01 1 227381487 227381487 C A CDC42BPA Missense_Mutation p.R200I 0.33 deleterious(0) probably_damaging(1) TCGA-66-2727-01 1 23110939 23110939 G C EPHB2 Missense_Mutation p.V61L 0.28 deleterious(0.01) probably_damaging(1) TCGA-66-2727-01 1 235291986 235291986 G A TOMM20 Silent p.A15A 0.29 TCGA-66-2727-01 1 242035336 242035336 G T EXO1 Nonsense_Mutation p.E424* 0.34 TCGA-66-2727-01 1 247875736 247875736 C A OR6F1 Missense_Mutation p.G108C 0.16 deleterious(0) probably_damaging(0.999) TCGA-66-2727-01 1 29385131 29385131 C G EPB41 Missense_Mutation p.P626A 0.08 tolerated(0.15) benign(0.046) TCGA-66-2727-01 1 36319296 36319296 G C AGO4 3'UTR 0.43 TCGA-66-2727-01 1 36894077 36894077 C A OSCP1 Intron 0.33 TCGA-66-2727-01 1 38288049 38288049 C T MTF1 Missense_Mutation p.G504E 0.38 tolerated(0.14) probably_damaging(0.999) TCGA-66-2727-01 1 52703869 52703869 G A ZFYVE9 Silent p.A260A 0.12 TCGA-66-2727-01 1 65897531 65897531 A G LEPROT Missense_Mutation p.I109V 0.34 tolerated(0.72) benign(0.04) TCGA-66-2727-01 1 66102457 66102457 A G LEPR Missense_Mutation p.K1086R 0.26 tolerated(0.15) benign(0.008) TCGA-66-2727-01 1 92798948 92798948 C T RPAP2 Missense_Mutation p.H486Y 0.43 deleterious(0.02) benign(0.328) TCGA-66-2727-01 20 13763342 13763342 C T ESF1 Missense_Mutation p.D149N 0.19 tolerated_low_confidence(0.22) benign(0.021) TCGA-66-2727-01 20 17492636 17492636 C A BFSP1 Silent p.T204T 0.22 TCGA-66-2727-01 20 30432320 30432320 G T FOXS1 3'UTR 0.31 TCGA-66-2727-01 20 3578558 3578558 C G ATRN Missense_Mutation p.L1159V 0.30 deleterious(0.02) possibly_damaging(0.78) TCGA-66-2727-01 20 39791871 39791871 G A PLCG1 Missense_Mutation p.V249M 0.23 deleterious(0) possibly_damaging(0.839) TCGA-66-2727-01 20 42693419 42693419 C A TOX2 Silent p.A294A 0.27 TCGA-66-2727-01 20 5086887 5086887 C A TMEM230 Missense_Mutation p.A120S 0.33 tolerated(0.52) benign(0.053) TCGA-66-2727-01 20 61511762 61511762 T A DIDO1 Missense_Mutation p.H1849L 0.48 benign(0.218) TCGA-66-2727-01 20 61939423 61939423 G T COL20A1 Missense_Mutation p.K252N 0.20 deleterious(0) probably_damaging(0.99) TCGA-66-2727-01 21 31933554 31933554 C A KRTAP19-7 Missense_Mutation p.G19C 0.19 deleterious_low_confidence(0.02) unknown(0) TCGA-66-2727-01 21 36079604 36079604 A T CLIC6 Silent p.G467G 0.37 TCGA-66-2727-01 21 38126592 38126592 G A HLCS Silent p.N712N 0.25 TCGA-66-2727-01 21 45732984 45732984 G T PFKL Missense_Mutation p.R184L 0.65 deleterious(0) probably_damaging(0.982) TCGA-66-2727-01 21 45994758 45994758 G T KRTAP10-4 Missense_Mutation p.V375L 0.43 deleterious(0.02) unknown(0) TCGA-66-2727-01 22 32487631 32487631 G T SLC5A1 Missense_Mutation p.A388S 0.31 tolerated(0.07) possibly_damaging(0.623) TCGA-66-2727-01 22 41077580 41077580 C T MCHR1 Missense_Mutation p.S306F 0.51 deleterious(0.02) possibly_damaging(0.787) TCGA-66-2727-01 2 125521621 125521621 G T CNTNAP5 Silent p.A809A 0.32 TCGA-66-2727-01 2 149247363 149247363 G T MBD5 Missense_Mutation p.D1155Y 0.28 deleterious_low_confidence(0.02) unknown(0) TCGA-66-2727-01 2 157182348 157182348 C A NR4A2 Missense_Mutation p.G569W 0.32 deleterious(0) probably_damaging(1) TCGA-66-2727-01 2 166897952 166897952 G A SCN1A Missense_Mutation p.P735L 0.24 deleterious(0.03) probably_damaging(1) TCGA-66-2727-01 2 167760268 167760268 G T XIRP2 Silent p.R92R 0.40 TCGA-66-2727-01 2 168103133 168103133 A T XIRP2 Missense_Mutation p.Q1744L 0.45 possibly_damaging(0.844) TCGA-66-2727-01 2 168106057 168106057 G C XIRP2 Missense_Mutation p.D2719H 0.17 probably_damaging(0.973) TCGA-66-2727-01 2 170042267 170042267 G A LRP2 Silent p.I3197I 0.24 TCGA-66-2727-01 2 179636118 179636118 G A TTN Missense_Mutation p.P2646S 0.34 TCGA-66-2727-01 2 207008770 207008770 T A NDUFS1 Missense_Mutation p.E334V 0.51 deleterious(0.03) benign(0.248) TCGA-66-2727-01 2 242814655 242814655 C G CXXC11 Silent p.V316V 0.39 TCGA-66-2727-01 2 25965124 25965124 G A ASXL2 Missense_Mutation p.S1361L 0.34 deleterious(0) probably_damaging(0.998) TCGA-66-2727-01 2 27603054 27603054 T C ZNF513 Silent p.L39L 0.33 TCGA-66-2727-01 2 44104801 44104801 C A ABCG8 Missense_Mutation p.L620I 0.28 tolerated(0.57) benign(0.001) TCGA-66-2727-01 2 74300734 74300734 G T TET3 Silent p.T716T 0.35 TCGA-66-2727-01 2 84785056 84785056 A T DNAH6 Silent p.I600I 0.29 TCGA-66-2727-01 2 8871217 8871217 T C KIDINS220 Missense_Mutation p.K1650R 0.29 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-66-2727-01 2 89309696 89309696 C G IGKV1-9 Missense_Mutation p.C45S 0.28 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-66-2727-01 2 89475975 89475975 C A IGKV2-24 Missense_Mutation p.G66V 0.30 deleterious(0) possibly_damaging(0.842) TCGA-66-2727-01 2 95719220 95719220 C A MAL 3'UTR 0.31 TCGA-66-2727-01 3 100594368 100594368 C G ABI3BP Silent p.L274L 0.16 TCGA-66-2727-01 3 108211976 108211976 C G MYH15 Missense_Mutation p.V274L 0.06 deleterious(0) benign(0.12) TCGA-66-2727-01 3 108724127 108724127 G A MORC1 Silent p.G601G 0.11 TCGA-66-2727-01 3 120408716 120408716 C T RABL3 Missense_Mutation p.R222Q 0.11 deleterious(0.02) possibly_damaging(0.574) TCGA-66-2727-01 3 127965812 127965812 C G EEFSEC Silent p.L150L 0.25 TCGA-66-2727-01 3 138478075 138478075 G - PIK3CB Frame_Shift_Del p.T38Lfs*46 0.08 TCGA-66-2727-01 3 148459456 148459456 C A AGTR1 Missense_Mutation p.L212I 0.12 tolerated(0.57) benign(0.246) TCGA-66-2727-01 3 151164451 151164451 G T IGSF10 Silent p.V1106V 0.14 TCGA-66-2727-01 3 154055904 154055904 A T GPR149 Missense_Mutation p.S594T 0.06 deleterious(0) probably_damaging(0.993) TCGA-66-2727-01 3 155203419 155203419 T C PLCH1 Silent p.V908V 0.61 TCGA-66-2727-01 3 164709160 164709160 C A SI Missense_Mutation p.A1697S 0.19 tolerated(0.07) benign(0.082) TCGA-66-2727-01 3 164905994 164905994 C A SLITRK3 Silent p.G875G 0.21 TCGA-66-2727-01 3 171320967 171320967 T C PLD1 Silent p.G1042G 0.21 TCGA-66-2727-01 3 179322629 179322629 G C NDUFB5 Missense_Mutation p.R9P 0.33 deleterious(0) probably_damaging(0.994) TCGA-66-2727-01 3 194167745 194167745 G C ATP13A3 Missense_Mutation p.Q470E 0.06 deleterious(0) probably_damaging(0.99) TCGA-66-2727-01 3 50402790 50402790 G A CACNA2D2 Missense_Mutation p.S1039F 0.50 deleterious(0) probably_damaging(0.994) TCGA-66-2727-01 3 62522231 62522231 G A CADPS Silent p.G664G 0.40 TCGA-66-2727-01 4 134072866 134072866 A G PCDH10 Missense_Mutation p.Y524C 0.19 tolerated(0.16) probably_damaging(0.969) TCGA-66-2727-01 4 141600878 141600878 G C TBC1D9 Silent p.L160L 0.18 TCGA-66-2727-01 4 141888789 141888789 C G RNF150 Missense_Mutation p.R241S 0.26 deleterious(0.04) possibly_damaging(0.554) TCGA-66-2727-01 4 145655962 145655962 G T HHIP Missense_Mutation p.R610S 0.29 deleterious(0) possibly_damaging(0.69) TCGA-66-2727-01 4 146026771 146026771 G C ABCE1 Missense_Mutation p.E40Q 0.26 tolerated(0.08) benign(0.285) TCGA-66-2727-01 4 156831260 156831260 G C TDO2 Missense_Mutation p.R172T 0.19 deleterious(0) possibly_damaging(0.882) TCGA-66-2727-01 4 169342912 169342912 T A DDX60L Missense_Mutation p.K798M 0.31 deleterious(0) probably_damaging(0.973) TCGA-66-2727-01 4 5687126 5687126 C A EVC2 Missense_Mutation p.A263S 0.58 deleterious(0) probably_damaging(0.978) TCGA-66-2727-01 5 112173893 112173893 G C APC Missense_Mutation p.E868Q 0.51 possibly_damaging(0.557) TCGA-66-2727-01 5 118484909 118484909 A G DMXL1 Silent p.K1129K 0.15 TCGA-66-2727-01 5 137144358 137144358 G A NPY6R RNA 0.31 TCGA-66-2727-01 5 137762958 137762958 C G KDM3B Missense_Mutation p.P1528R 0.35 deleterious(0) probably_damaging(0.998) TCGA-66-2727-01 5 140516850 140516850 G T PCDHB5 Missense_Mutation p.G612W 0.41 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-66-2727-01 5 140531962 140531962 G C PCDHB6 Silent p.A708A 0.17 TCGA-66-2727-01 5 140744848 140744848 G T PCDHGA5 Missense_Mutation p.M317I 0.36 tolerated_low_confidence(0.51) benign(0.013) TCGA-66-2727-01 5 140756055 140756055 G T PCDHGA6 Missense_Mutation p.G802V 0.34 tolerated_low_confidence(0.09) benign(0.093) TCGA-66-2727-01 5 140756056 140756056 A T PCDHGA6 Silent p.G802G 0.35 TCGA-66-2727-01 5 140769650 140769650 C T PCDHGB4 Silent p.S733S 0.27 TCGA-66-2727-01 5 140794536 140794536 G A PCDHGA10 Silent p.V598V 0.17 TCGA-66-2727-01 5 1432761 1432761 G A SLC6A3 Silent p.N157N 0.33 TCGA-66-2727-01 5 156533930 156533930 G A HAVCR2 Silent p.A34A 0.20 TCGA-66-2727-01 5 35086375 35086375 G T PRLR Nonsense_Mutation p.C46* 0.44 TCGA-66-2727-01 5 60821713 60821713 A T ZSWIM6 Missense_Mutation p.I534F 0.43 deleterious(0) probably_damaging(0.962) TCGA-66-2727-01 5 63256881 63256881 C G HTR1A Silent p.A222A 0.40 TCGA-66-2727-01 5 70840961 70840961 A T BDP1 Missense_Mutation p.D2220V 0.21 deleterious(0.02) benign(0.226) TCGA-66-2727-01 5 75427686 75427687 CC G SV2C Frame_Shift_Del p.Q38Rfs*62 0.16 TCGA-66-2727-01 5 9154614 9154614 G A SEMA5A Silent p.F489F 0.17 TCGA-66-2727-01 6 112452259 112452259 C T LAMA4 Missense_Mutation p.M1293I 0.20 deleterious(0.01) benign(0.062) TCGA-66-2727-01 6 133065475 133065475 T C VNN2 Silent p.L509L 0.11 TCGA-66-2727-01 6 17817326 17817326 T G KIF13A Missense_Mutation p.Q642P 0.28 tolerated(0.23) benign(0) TCGA-66-2727-01 6 20955674 20955674 C G CDKAL1 Missense_Mutation p.T256S 0.62 tolerated(0.33) probably_damaging(0.996) TCGA-66-2727-01 6 27100230 27100230 G A HIST1H2BJ Silent p.R100R 0.59 TCGA-66-2727-01 6 36298332 36298332 T C C6orf222 Missense_Mutation p.K46E 0.61 tolerated(0.05) possibly_damaging(0.801) TCGA-66-2727-01 6 43310436 43310437 AT - ZNF318 Frame_Shift_Del p.M1085Afs*3 0.21 TCGA-66-2727-01 6 44119666 44119666 T - TMEM63B Frame_Shift_Del p.L586Rfs*10 0.35 TCGA-66-2727-01 6 57512691 57512691 G T PRIM2 3'UTR 0.15 TCGA-66-2727-01 6 96651734 96651734 A G FUT9 Missense_Mutation p.I235V 0.17 tolerated(0.33) benign(0.264) TCGA-66-2727-01 7 100675507 100675507 T A MUC17 Silent p.P270P 0.32 TCGA-66-2727-01 7 107688550 107688550 C G LAMB4 Missense_Mutation p.G1377R 0.22 deleterious(0.01) probably_damaging(0.966) TCGA-66-2727-01 7 142104152 142104152 T A TRBV6-9 Missense_Mutation p.T105S 0.30 tolerated(0.05) possibly_damaging(0.602) TCGA-66-2727-01 7 143771754 143771754 T C OR2A25 Missense_Mutation p.W148R 0.30 deleterious(0) probably_damaging(1) TCGA-66-2727-01 7 20682900 20682900 C A ABCB5 Silent p.T136T 0.19 TCGA-66-2727-01 7 27582650 27582650 G T HIBADH Missense_Mutation p.A185D 0.22 deleterious(0) possibly_damaging(0.829) TCGA-66-2727-01 7 35289604 35289604 G T TBX20 Missense_Mutation p.F113L 0.27 deleterious(0) probably_damaging(0.991) TCGA-66-2727-01 7 38389105 38389105 C A TRGV5 Missense_Mutation p.D69Y 0.27 tolerated(0.09) possibly_damaging(0.764) TCGA-66-2727-01 7 39446339 39446339 G T POU6F2 Missense_Mutation p.Q342H 0.24 deleterious(0) unknown(0) TCGA-66-2727-01 7 47968883 47968883 G A PKD1L1 Silent p.F326F 0.30 TCGA-66-2727-01 7 91974291 91974291 G A ANKIB1 Splice_Site p.X333_splice 0.26 TCGA-66-2727-01 8 110457075 110457075 A G PKHD1L1 Silent p.P1659P 0.17 TCGA-66-2727-01 8 139268978 139268978 C G FAM135B Missense_Mutation p.D108H 0.12 deleterious(0.01) possibly_damaging(0.77) TCGA-66-2727-01 8 39502981 39502981 A T ADAM18 Missense_Mutation p.N345I 0.63 deleterious(0) possibly_damaging(0.804) TCGA-66-2727-01 8 42608341 42608341 C G CHRNA6 Missense_Mutation p.G489A 0.10 tolerated(1) benign(0.009) TCGA-66-2727-01 8 42924714 42924714 C G FNTA Missense_Mutation p.L140V 0.12 tolerated(0.13) benign(0.143) TCGA-66-2727-01 8 75757649 75757649 C T PI15 Silent p.C186C 0.21 TCGA-66-2727-01 8 77618662 77618662 G C ZFHX4 Missense_Mutation p.R780T 0.43 benign(0.402) TCGA-66-2727-01 9 35720146 35720146 T C TLN1 Missense_Mutation p.I452V 0.24 tolerated(1) benign(0.016) TCGA-66-2727-01 9 74526735 74526735 A T C9orf85 Nonsense_Mutation p.K29* 0.26 TCGA-66-2727-01 9 79325136 79325136 G C PRUNE2 Nonsense_Mutation p.S685* 0.20 TCGA-66-2727-01 9 88200380 88200380 T A AGTPBP1 Missense_Mutation p.R1015W 0.14 deleterious(0) probably_damaging(0.96) TCGA-66-2727-01 9 90502753 90502753 G T SPATA31E1 Silent p.P1117P 0.29 TCGA-66-2727-01 9 96437969 96437969 C T PHF2 Silent p.V910V 0.32 TCGA-66-2727-01 X 100630231 100630231 G T BTK Silent p.S14S 0.10 TCGA-66-2727-01 X 101912635 101912635 C A GPRASP1 Missense_Mutation p.T1265N 0.10 deleterious(0) probably_damaging(0.997) TCGA-66-2727-01 X 102864368 102864368 C A TCEAL3 Missense_Mutation p.Q126K 0.11 tolerated(1) benign(0.097) TCGA-66-2727-01 X 103495396 103495396 G A ESX1 Missense_Mutation p.P245L 0.16 deleterious(0.03) unknown(0) TCGA-66-2727-01 X 106083927 106083927 C A TBC1D8B Missense_Mutation p.P511H 0.19 deleterious(0) probably_damaging(0.998) TCGA-66-2727-01 X 114953402 114953402 G A RP1-241P17.4 Nonsense_Mutation p.R50* 0.33 TCGA-66-2727-01 X 115577907 115577907 G T SLC6A14 Missense_Mutation p.V264L 0.37 deleterious(0) probably_damaging(0.99) TCGA-66-2727-01 X 117959684 117959684 T A ZCCHC12 Silent p.A159A 0.42 TCGA-66-2727-01 X 118972475 118972475 C A UPF3B Nonsense_Mutation p.E288* 0.33 TCGA-66-2727-01 X 118975200 118975200 C T UPF3B Missense_Mutation p.E216K 0.10 deleterious(0.01) possibly_damaging(0.625) TCGA-66-2727-01 X 118977226 118977226 C T UPF3B Missense_Mutation p.D170N 0.06 deleterious(0) probably_damaging(0.928) TCGA-66-2727-01 X 122801009 122801009 C T THOC2 Missense_Mutation p.A380T 0.16 deleterious(0) benign(0.342) TCGA-66-2727-01 X 133379769 133379769 A T CCDC160 Silent p.S313S 0.15 TCGA-66-2727-01 X 134421514 134421514 T A ZNF75D Missense_Mutation p.K363I 0.19 deleterious(0) probably_damaging(0.987) TCGA-66-2727-01 X 135496475 135496475 G T GPR112 Missense_Mutation p.S3065I 0.13 tolerated(0.11) benign(0.033) TCGA-66-2727-01 X 136112439 136112439 G T GPR101 Silent p.I465I 0.41 TCGA-66-2727-01 X 13774698 13774698 T A OFD1 Missense_Mutation p.L408H 0.22 deleterious(0) probably_damaging(0.995) TCGA-66-2727-01 X 138708792 138708792 T C MCF2 Missense_Mutation p.T248A 0.11 deleterious(0.01) probably_damaging(0.977) TCGA-66-2727-01 X 139038261 139038261 T A CXorf66 Missense_Mutation p.T294S 0.13 tolerated(0.09) possibly_damaging(0.801) TCGA-66-2727-01 X 140969303 140969303 G A MAGEC3 Missense_Mutation p.M210I 0.17 tolerated(0.07) benign(0.072) TCGA-66-2727-01 X 142718108 142718108 G A SLITRK4 Missense_Mutation p.R273C 0.18 deleterious(0) possibly_damaging(0.791) TCGA-66-2727-01 X 147743983 147743983 C A AFF2 Silent p.A245A 0.15 TCGA-66-2727-01 X 22291549 22291549 C A ZNF645 Missense_Mutation p.S147R 0.21 tolerated(0.11) benign(0.003) TCGA-66-2727-01 X 27997798 27997798 C A DCAF8L1 Missense_Mutation p.V552L 0.20 tolerated(0.18) benign(0.001) TCGA-66-2727-01 X 30577646 30577646 A G CXorf21 Missense_Mutation p.L276S 0.20 deleterious(0) probably_damaging(0.997) TCGA-66-2727-01 X 38146392 38146392 C G RPGR Missense_Mutation p.K620N 0.24 benign(0.263) TCGA-66-2727-01 X 44120491 44120491 A G EFHC2 Missense_Mutation p.F146L 0.12 deleterious(0) possibly_damaging(0.667) TCGA-66-2727-01 X 47918465 47918465 C T ZNF630 Missense_Mutation p.E456K 0.16 deleterious(0) probably_damaging(0.98) TCGA-66-2727-01 X 49459326 49459326 A T PAGE1 Nonsense_Mutation p.Y16* 0.13 TCGA-66-2727-01 X 49840470 49840470 G A CLCN5 Missense_Mutation p.D146N 0.23 deleterious(0) probably_damaging(0.999) TCGA-66-2727-01 X 54470996 54470996 G C TSR2 3'UTR 0.22 TCGA-66-2727-01 X 66766093 66766093 C G AR Missense_Mutation p.L369V 0.26 tolerated_low_confidence(0.05) benign(0.094) TCGA-66-2727-01 X 77528442 77528442 C T CYSLTR1 Missense_Mutation p.D268N 0.17 tolerated(0.17) benign(0.068) TCGA-66-2727-01 X 83128189 83128189 C A CYLC1 Missense_Mutation p.A158E 0.39 tolerated(0.29) possibly_damaging(0.765) TCGA-66-2727-01 X 90691646 90691646 C T PABPC5 Missense_Mutation p.A357V 0.38 deleterious(0) probably_damaging(1) TCGA-66-2734-01 10 114911628 114911628 G T TCF7L2 Missense_Mutation p.Q382H 0.15 deleterious(0) benign(0.045) TCGA-66-2734-01 10 129676511 129676511 C A CLRN3 Missense_Mutation p.V195L 0.15 tolerated(0.15) benign(0.174) TCGA-66-2734-01 10 134650410 134650410 T C TTC40 Silent p.Q2149Q 0.11 TCGA-66-2734-01 10 30915143 30915143 C A LYZL2 Silent p.T109T 0.14 TCGA-66-2734-01 10 31809717 31809717 T A ZEB1 Missense_Mutation p.L486H 0.20 deleterious(0.03) possibly_damaging(0.88) TCGA-66-2734-01 10 858839 858839 C A LARP4B 3'UTR 0.18 TCGA-66-2734-01 11 102595612 102595612 C T MMP8 5'UTR 0.25 TCGA-66-2734-01 11 10800692 10800692 T A CTR9 3'UTR 0.13 TCGA-66-2734-01 11 117307860 117307860 G A DSCAML1 Silent p.F1626F 0.17 TCGA-66-2734-01 11 123489412 123489412 T C GRAMD1B Missense_Mutation p.L638P 0.20 deleterious(0) probably_damaging(0.959) TCGA-66-2734-01 11 123676931 123676931 T C OR6M1 Missense_Mutation p.I43V 0.13 deleterious(0.02) possibly_damaging(0.505) TCGA-66-2734-01 11 124294684 124294684 G T OR8B4 Missense_Mutation p.F28L 0.21 deleterious_low_confidence(0.02) probably_damaging(0.97) TCGA-66-2734-01 11 124310527 124310527 C T OR8B8 Missense_Mutation p.G152E 0.11 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-66-2734-01 11 126333056 126333056 G T KIRREL3 Silent p.I246I 0.23 TCGA-66-2734-01 11 1629296 1629296 G A KRTAP5-3 Missense_Mutation p.S107F 0.15 deleterious(0.04) unknown(0) TCGA-66-2734-01 11 18158831 18158831 C A MRGPRX3 Missense_Mutation p.L28M 0.16 tolerated(0.13) benign(0.133) TCGA-66-2734-01 11 36615223 36615223 G T RAG2 Missense_Mutation p.H166N 0.15 deleterious(0) benign(0.03) TCGA-66-2734-01 11 55798388 55798388 G C OR5AS1 Missense_Mutation p.R165T 0.09 tolerated(0.09) benign(0.026) TCGA-66-2734-01 11 55861505 55861505 C A OR8I2 Missense_Mutation p.A241E 0.14 deleterious(0) possibly_damaging(0.614) TCGA-66-2734-01 11 59481101 59481101 T C OR10V1 Missense_Mutation p.Y73C 0.14 deleterious(0.03) benign(0.111) TCGA-66-2734-01 11 59997512 59997512 C A MS4A4E Missense_Mutation p.G6V 0.26 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-66-2734-01 11 60160167 60160167 G T MS4A7 Missense_Mutation p.V186L 0.21 tolerated(0.28) benign(0.093) TCGA-66-2734-01 11 6789336 6789336 G C OR2AG2 Missense_Mutation p.L285V 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-66-2734-01 11 88301038 88301038 G T GRM5 Missense_Mutation p.R605S 0.10 tolerated(0.05) possibly_damaging(0.737) TCGA-66-2734-01 11 8959439 8959439 G T ASCL3 Nonsense_Mutation p.Y90* 0.19 TCGA-66-2734-01 12 100617613 100617613 G T ACTR6 Missense_Mutation p.D371Y 0.09 deleterious(0.01) probably_damaging(1) TCGA-66-2734-01 12 108686289 108686289 G A CMKLR1 Missense_Mutation p.R151C 0.08 deleterious(0) probably_damaging(1) TCGA-66-2734-01 12 112486193 112486193 C A NAA25 Nonsense_Mutation p.E595* 0.13 TCGA-66-2734-01 12 112926888 112926888 G T PTPN11 Missense_Mutation p.G503V 0.16 deleterious(0) probably_damaging(1) TCGA-66-2734-01 12 11420857 11420857 T A PRB3 Missense_Mutation p.Q109L 0.15 tolerated(0.17) unknown(0) TCGA-66-2734-01 12 117768764 117768764 A T NOS1 Missense_Mutation p.S37R 0.17 deleterious_low_confidence(0.04) benign(0.314) TCGA-66-2734-01 12 124420188 124420188 A G DNAH10 3'UTR 0.38 TCGA-66-2734-01 12 15733040 15733040 C A PTPRO Missense_Mutation p.N996K 0.23 deleterious(0) probably_damaging(1) TCGA-66-2734-01 12 2062441 2062441 T G DCP1B Missense_Mutation p.E222A 0.11 deleterious(0) probably_damaging(0.953) TCGA-66-2734-01 12 52404685 52404685 A T GRASP Missense_Mutation p.K106M 0.14 deleterious(0) probably_damaging(0.997) TCGA-66-2734-01 12 56330863 56330863 G A DGKA Missense_Mutation p.V43I 0.24 tolerated(0.21) benign(0.002) TCGA-66-2734-01 12 64061895 64061895 C A DPY19L2 Silent p.R93R 0.26 TCGA-66-2734-01 12 64061896 64061896 C T DPY19L2 Missense_Mutation p.R93Q 0.23 tolerated(0.37) benign(0.018) TCGA-66-2734-01 12 8051570 8051570 A C NANOGP1 RNA 0.15 TCGA-66-2734-01 13 77699588 77699588 C T MYCBP2 Missense_Mutation p.G2596R 0.14 probably_damaging(0.999) TCGA-66-2734-01 14 106110271 106110271 C T IGHG2 Missense_Mutation p.G116E 0.16 tolerated(0.08) probably_damaging(0.998) TCGA-66-2734-01 14 106494206 106494206 T C IGHV2-5 Missense_Mutation p.K96E 0.25 deleterious(0.01) benign(0.045) TCGA-66-2734-01 14 21991660 21991660 C T SALL2 Silent p.E734E 0.12 TCGA-66-2734-01 14 39565184 39565184 C A SEC23A Nonsense_Mutation p.E47* 0.10 TCGA-66-2734-01 14 92548666 92548666 C A ATXN3 Missense_Mutation p.R251S 0.18 tolerated(0.06) benign(0.115) TCGA-66-2734-01 14 95080662 95080662 A G SERPINA3 5'UTR 0.21 TCGA-66-2734-01 14 95669862 95669862 C A CLMN Missense_Mutation p.R608S 0.28 deleterious_low_confidence(0) benign(0.293) TCGA-66-2734-01 15 101865061 101865061 C A PCSK6 Missense_Mutation p.D790Y 0.11 deleterious(0.02) benign(0.255) TCGA-66-2734-01 15 20488813 20488813 C A CHEK2P2 RNA 0.07 TCGA-66-2734-01 15 23687594 23687594 T A GOLGA6L2 Intron 0.10 TCGA-66-2734-01 15 27222171 27222171 G A GABRG3 Missense_Mutation p.E26K 0.12 tolerated(0.12) benign(0.04) TCGA-66-2734-01 15 34032134 34032134 G T RYR3 Missense_Mutation p.L2586F 0.16 benign(0.24) TCGA-66-2734-01 15 41856430 41856430 G A TYRO3 Missense_Mutation p.G210D 0.15 deleterious(0) probably_damaging(1) TCGA-66-2734-01 15 45402882 45402882 G A DUOX2 Silent p.P303P 0.18 TCGA-66-2734-01 15 54306924 54306924 A C UNC13C Silent p.G608G 0.18 TCGA-66-2734-01 15 63014652 63014652 C T TLN2 Missense_Mutation p.T1031I 0.21 deleterious(0.05) benign(0.197) TCGA-66-2734-01 15 63045984 63045984 G T TLN2 Missense_Mutation p.V1449F 0.10 deleterious(0) probably_damaging(0.918) TCGA-66-2734-01 15 79606180 79606180 C T TMED3 Nonsense_Mutation p.Q84* 0.20 TCGA-66-2734-01 15 89182735 89182735 G C ISG20 Missense_Mutation p.E46D 0.13 tolerated(0.16) benign(0.005) TCGA-66-2734-01 16 19481081 19481081 G T TMC5 Missense_Mutation p.W572C 0.15 deleterious(0) probably_damaging(1) TCGA-66-2734-01 16 2160565 2160565 G A PKD1 Missense_Mutation p.R1535C 0.37 possibly_damaging(0.901) TCGA-66-2734-01 16 65397171 65397171 A G LINC00922 RNA 0.20 TCGA-66-2734-01 16 89623562 89623562 T A SPG7 3'UTR 0.30 TCGA-66-2734-01 17 10298626 10298626 C G MYH8 Missense_Mutation p.V1596L 0.18 tolerated(0.13) benign(0.021) TCGA-66-2734-01 17 11514974 11514974 G T DNAH9 Missense_Mutation p.D261Y 0.22 possibly_damaging(0.675) TCGA-66-2734-01 17 11515012 11515012 G T DNAH9 Silent p.T273T 0.21 TCGA-66-2734-01 17 18149711 18149711 G A FLII Silent p.I1039I 0.11 TCGA-66-2734-01 17 18682490 18682490 T C FBXW10 Missense_Mutation p.V1013A 0.17 tolerated(0.68) benign(0.008) TCGA-66-2734-01 17 19581892 19581892 A G SLC47A2 3'UTR 0.22 TCGA-66-2734-01 17 33592328 33592328 C T SLFN5 Silent p.P699P 0.19 TCGA-66-2734-01 17 3967941 3967948 CAGTGGGA TCGTGGGC ZZEF1 Missense_Mutation p.E1478K 0.14 TCGA-66-2734-01 17 46629716 46629716 T C HOXB3 Missense_Mutation p.T41A 0.10 tolerated(0.26) benign(0.01) TCGA-66-2734-01 17 4712418 4712418 C T PLD2 Missense_Mutation p.A136V 0.26 tolerated(0.69) benign(0.089) TCGA-66-2734-01 17 50008357 50008357 C A CA10 Missense_Mutation p.G91V 0.14 deleterious(0.01) benign(0.261) TCGA-66-2734-01 17 62036742 62036742 G A SCN4A Silent p.P634P 0.18 TCGA-66-2734-01 17 7577534 7577534 C A TP53 Missense_Mutation p.R249S 0.33 deleterious(0) probably_damaging(0.994) TCGA-66-2734-01 18 14542853 14542853 A G POTEC Missense_Mutation p.M98T 0.11 deleterious_low_confidence(0.02) benign(0.042) TCGA-66-2734-01 18 2892094 2892094 C A EMILIN2 Missense_Mutation p.P657T 0.11 tolerated(0.7) benign(0.098) TCGA-66-2734-01 18 29045295 29045295 G A DSG3 Missense_Mutation p.R429H 0.15 tolerated(0.45) benign(0.243) TCGA-66-2734-01 19 11565633 11565633 G T ELAVL3 Missense_Mutation p.A271E 0.24 tolerated(0.11) benign(0.035) TCGA-66-2734-01 19 11917126 11917126 A T ZNF491 Nonsense_Mutation p.R120* 0.21 TCGA-66-2734-01 19 15794350 15794350 T A CYP4F12 Missense_Mutation p.V232E 0.19 deleterious(0.01) possibly_damaging(0.465) TCGA-66-2734-01 19 15839195 15839195 G T OR10H2 Silent p.L114L 0.16 TCGA-66-2734-01 19 19338255 19338255 C A NCAN Missense_Mutation p.A609D 0.21 tolerated(0.12) benign(0.081) TCGA-66-2734-01 19 24309473 24309473 C T ZNF254 Missense_Mutation p.T224I 0.11 tolerated(0.21) benign(0.008) TCGA-66-2734-01 19 32923703 32923703 C T DPY19L3 Missense_Mutation p.L107F 0.12 tolerated(0.9) benign(0.011) TCGA-66-2734-01 19 40097949 40097949 C T LGALS13 Silent p.I130I 0.10 TCGA-66-2734-01 19 42485885 42485885 G T ATP1A3 Missense_Mutation p.P444T 0.17 deleterious(0.01) benign(0.045) TCGA-66-2734-01 19 44590805 44590805 G T ZNF284 Missense_Mutation p.V392F 0.24 deleterious(0) possibly_damaging(0.884) TCGA-66-2734-01 19 45883377 45883377 C G PPP1R13L 3'UTR 0.16 TCGA-66-2734-01 19 49142718 49142718 T G CA11 Splice_Site p.X214_splice 0.12 TCGA-66-2734-01 19 51133130 51133130 C A SYT3 Missense_Mutation p.D325Y 0.15 deleterious(0) probably_damaging(0.987) TCGA-66-2734-01 19 57642748 57642748 G C USP29 Missense_Mutation p.S902T 0.16 tolerated(0.07) benign(0.357) TCGA-66-2734-01 1 10715789 10715789 G A CASZ1 Missense_Mutation p.R528C 0.11 deleterious(0) probably_damaging(0.986) TCGA-66-2734-01 1 120263815 120263815 G C PHGDH Missense_Mutation p.R54P 0.21 deleterious(0) probably_damaging(0.999) TCGA-66-2734-01 1 152285911 152285911 C G FLG Missense_Mutation p.R484P 0.16 benign(0.088) TCGA-66-2734-01 1 152552178 152552178 C A LCE3D Missense_Mutation p.G79C 0.15 tolerated_low_confidence(0.08) unknown(0) TCGA-66-2734-01 1 155448861 155448861 C A ASH1L Missense_Mutation p.R1267M 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-66-2734-01 1 158057651 158057651 G C KIRREL Splice_Site p.X256_splice 0.10 TCGA-66-2734-01 1 158815425 158815425 C T MNDA Missense_Mutation p.P207S 0.13 deleterious(0.01) benign(0.084) TCGA-66-2734-01 1 169483524 169483524 C T F5 3'UTR 0.11 TCGA-66-2734-01 1 17085024 17085024 G C MST1L RNA 0.06 TCGA-66-2734-01 1 171621186 171621186 C A MYOC Missense_Mutation p.R189L 0.24 tolerated(0.16) benign(0.004) TCGA-66-2734-01 1 175053048 175053048 C G TNN Missense_Mutation p.P404R 0.19 deleterious(0.01) probably_damaging(0.965) TCGA-66-2734-01 1 18152822 18152822 C A ACTL8 Silent p.L303L 0.21 TCGA-66-2734-01 1 196871656 196871656 G T CFHR4 Missense_Mutation p.C55F 0.09 deleterious(0) probably_damaging(1) TCGA-66-2734-01 1 204433648 204433648 C A PIK3C2B Silent p.G373G 0.17 TCGA-66-2734-01 1 207643415 207643415 C A CR2 Missense_Mutation p.T398K 0.21 deleterious(0.04) benign(0.193) TCGA-66-2734-01 1 22079485 22079485 C A USP48 Missense_Mutation p.Q180H 0.26 deleterious(0) possibly_damaging(0.816) TCGA-66-2734-01 1 237666802 237666802 C A RYR2 Missense_Mutation p.S870R 0.20 probably_damaging(0.959) TCGA-66-2734-01 1 237670108 237670108 T C RYR2 Silent p.Y904Y 0.22 TCGA-66-2734-01 1 237813369 237813369 A T RYR2 Missense_Mutation p.I2569L 0.15 possibly_damaging(0.683) TCGA-66-2734-01 1 248039414 248039414 G T TRIM58 Missense_Mutation p.V362F 0.16 deleterious(0) probably_damaging(0.997) TCGA-66-2734-01 1 26369913 26369913 C A SLC30A2 Missense_Mutation p.G183V 0.13 deleterious(0.03) probably_damaging(0.954) TCGA-66-2734-01 1 33291859 33291859 C T S100PBP Silent p.Y53Y 0.10 TCGA-66-2734-01 1 3390011 3390011 G T ARHGEF16 Silent p.A410A 0.23 TCGA-66-2734-01 1 36755023 36755023 C A THRAP3 Nonsense_Mutation p.S468* 0.18 TCGA-66-2734-01 1 42048104 42048104 C G HIVEP3 Missense_Mutation p.E789Q 0.20 possibly_damaging(0.543) TCGA-66-2734-01 1 43782880 43782880 C T TIE1 Missense_Mutation p.T807I 0.09 tolerated(0.05) probably_damaging(0.996) TCGA-66-2734-01 1 57409428 57409428 A T C8B Missense_Mutation p.V392D 0.12 tolerated(0.07) benign(0.183) TCGA-66-2734-01 20 16359681 16359681 T - KIF16B Frame_Shift_Del p.K989Rfs*51 0.11 TCGA-66-2734-01 20 17610501 17610501 C A RRBP1 Nonsense_Mutation p.E473* 0.45 TCGA-66-2734-01 20 20505152 20505152 C A RALGAPA2 Missense_Mutation p.W1266C 0.19 deleterious(0) probably_damaging(0.998) TCGA-66-2734-01 20 20505153 20505153 C A RALGAPA2 Missense_Mutation p.W1266L 0.19 deleterious(0) probably_damaging(0.911) TCGA-66-2734-01 20 30956834 30956834 G T ASXL1 Missense_Mutation p.A54S 0.17 deleterious(0) probably_damaging(0.998) TCGA-66-2734-01 20 34241817 34241817 T C RBM12 Silent p.V476V 0.23 TCGA-66-2734-01 20 34242625 34242625 G - RBM12 Frame_Shift_Del p.P207Qfs*29 0.21 TCGA-66-2734-01 20 56137948 56137948 T A PCK1 Silent p.P201P 0.19 TCGA-66-2734-01 20 57769790 57769790 G C ZNF831 Missense_Mutation p.G1239A 0.28 tolerated(0.06) probably_damaging(0.923) TCGA-66-2734-01 20 61959481 61959481 T A COL20A1 Splice_Site p.X1205_splice 0.15 TCGA-66-2734-01 20 62595499 62595499 C G ZNF512B Missense_Mutation p.A469P 0.20 tolerated(0.28) benign(0.001) TCGA-66-2734-01 22 22735419 22735419 C A IGLV1-44 Missense_Mutation p.A19D 0.11 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-66-2734-01 22 22735420 22735420 C A IGLV1-44 Silent p.A19A 0.10 TCGA-66-2734-01 22 22843151 22843151 C A ZNF280B Missense_Mutation p.R191S 0.13 tolerated(1) benign(0.004) TCGA-66-2734-01 22 29837623 29837623 C T RFPL1 Missense_Mutation p.R156W 0.24 tolerated(0.1) benign(0.255) TCGA-66-2734-01 22 31741322 31741322 G A PATZ1 Silent p.G89G 0.29 TCGA-66-2734-01 22 34000433 34000433 T C LARGE Silent p.A201A 0.10 TCGA-66-2734-01 22 40045840 40045840 C A CACNA1I Silent p.R634R 0.17 TCGA-66-2734-01 2 121106938 121106938 T G INHBB Missense_Mutation p.L238V 0.07 tolerated(0.18) benign(0.041) TCGA-66-2734-01 2 121742113 121742113 C A GLI2 Missense_Mutation p.H584N 0.09 deleterious(0) probably_damaging(0.999) TCGA-66-2734-01 2 157425354 157425354 C T GPD2 Silent p.L395L 0.19 TCGA-66-2734-01 2 168097247 168097247 G A XIRP2 Splice_Site p.X348_splice 0.09 TCGA-66-2734-01 2 217724281 217724281 C T TNP1 3'UTR 0.48 TCGA-66-2734-01 2 227890527 227890527 C A COL4A4 Splice_Site p.X1361_splice 0.13 TCGA-66-2734-01 2 234762542 234762542 G C HJURP Missense_Mutation p.F44L 0.05 deleterious(0) possibly_damaging(0.785) TCGA-66-2734-01 2 238267693 238267693 C - COL6A3 Frame_Shift_Del p.N2132Ifs*110 0.15 TCGA-66-2734-01 2 32526505 32526505 G C YIPF4 Missense_Mutation p.V180L 0.24 tolerated(0.3) benign(0.027) TCGA-66-2734-01 2 47378423 47378423 G C C2orf61 Missense_Mutation p.P125A 0.12 tolerated(0.14) benign(0.117) TCGA-66-2734-01 2 80529786 80529786 G A LRRTM1 Missense_Mutation p.P387S 0.33 tolerated(0.44) benign(0) TCGA-66-2734-01 3 108373066 108373066 A T DZIP3 Missense_Mutation p.K703I 0.22 deleterious_low_confidence(0) benign(0.429) TCGA-66-2734-01 3 112357818 112357818 T A CCDC80 Missense_Mutation p.K312I 0.25 deleterious(0) benign(0.136) TCGA-66-2734-01 3 122641184 122641184 C A SEMA5B Missense_Mutation p.E515D 0.29 tolerated(0.56) benign(0.005) TCGA-66-2734-01 3 124380707 124380707 G T KALRN Nonsense_Mutation p.E184* 0.11 TCGA-66-2734-01 3 128848948 128848948 T G ISY1 Missense_Mutation p.E300D 0.37 deleterious(0.03) benign(0.05) TCGA-66-2734-01 3 130398279 130398279 C A PIK3R4 Missense_Mutation p.R1319S 0.22 tolerated(0.52) benign(0.415) TCGA-66-2734-01 3 137484005 137484005 G A SOX14 Missense_Mutation p.A127T 0.30 tolerated(0.18) benign(0.244) TCGA-66-2734-01 3 150644640 150644640 C T CLRN1 3'Flank 0.11 TCGA-66-2734-01 3 169835124 169835124 T A PHC3 Missense_Mutation p.S695C 0.35 deleterious(0.05) possibly_damaging(0.513) TCGA-66-2734-01 3 48664368 48664368 T C SLC26A6 Missense_Mutation p.I672V 0.13 tolerated(0.25) benign(0.116) TCGA-66-2734-01 3 51895936 51895936 A C IQCF2 Silent p.T27T 0.17 TCGA-66-2734-01 3 5249922 5249922 G T EDEM1 Missense_Mutation p.V495L 0.33 deleterious(0.01) possibly_damaging(0.643) TCGA-66-2734-01 4 126242434 126242434 G T FAT4 Missense_Mutation p.G1623V 0.28 probably_damaging(0.994) TCGA-66-2734-01 4 188924324 188924324 A T ZFP42 Missense_Mutation p.E121D 0.28 tolerated(0.07) benign(0.073) TCGA-66-2734-01 4 42145654 42145654 A C BEND4 Missense_Mutation p.L282R 0.28 tolerated_low_confidence(0.06) probably_damaging(0.986) TCGA-66-2734-01 4 71232555 71232555 C G SMR3A Silent p.P83P 0.14 TCGA-66-2734-01 4 85525418 85525418 A G CDS1 Missense_Mutation p.Y47C 0.32 tolerated(0.18) benign(0.004) TCGA-66-2734-01 4 96761394 96761394 C A PDHA2 Missense_Mutation p.D31E 0.19 tolerated(1) benign(0.001) TCGA-66-2734-01 5 134153324 134153324 G T DDX46 Nonsense_Mutation p.E917* 0.12 TCGA-66-2734-01 5 13719032 13719032 G T DNAH5 Missense_Mutation p.P4153H 0.21 probably_damaging(0.971) TCGA-66-2734-01 5 13719033 13719033 G T DNAH5 Missense_Mutation p.P4153T 0.19 possibly_damaging(0.876) TCGA-66-2734-01 5 148207268 148207268 G A ADRB2 Missense_Mutation p.V292I 0.11 tolerated(0.1) benign(0.264) TCGA-66-2734-01 5 179757699 179757699 C A GFPT2 Splice_Site p.X178_splice 0.16 TCGA-66-2734-01 5 179757700 179757700 C A GFPT2 Missense_Mutation p.L178F 0.17 deleterious(0) possibly_damaging(0.9) TCGA-66-2734-01 5 23523402 23523402 C A PRDM9 Silent p.I295I 0.22 TCGA-66-2734-01 5 33881250 33881250 C - ADAMTS12 Frame_Shift_Del p.A155Qfs*9 0.11 TCGA-66-2734-01 5 36105250 36105250 T C LMBRD2 Missense_Mutation p.I649M 0.21 tolerated(0.18) benign(0.027) TCGA-66-2734-01 5 37024753 37024753 A G NIPBL Missense_Mutation p.T1881A 0.34 tolerated(0.18) benign(0.039) TCGA-66-2734-01 5 54401310 54401310 G A GZMA Missense_Mutation p.E27K 0.18 tolerated(0.32) benign(0.01) TCGA-66-2734-01 5 55075836 55075836 A G DDX4 Missense_Mutation p.R147G 0.17 tolerated_low_confidence(0.1) probably_damaging(0.997) TCGA-66-2734-01 5 76646894 76646894 G T PDE8B Missense_Mutation p.W341L 0.24 deleterious(0) probably_damaging(0.999) TCGA-66-2734-01 6 123786047 123786047 T C TRDN Intron 0.33 TCGA-66-2734-01 6 136597032 136597032 C T BCLAF1 Missense_Mutation p.R544H 0.10 tolerated(0.09) possibly_damaging(0.715) TCGA-66-2734-01 6 138200413 138200413 G A TNFAIP3 Missense_Mutation p.G611S 0.11 deleterious(0.03) possibly_damaging(0.639) TCGA-66-2734-01 6 148865632 148865632 G T SASH1 Missense_Mutation p.G1009V 0.25 tolerated_low_confidence(0.1) benign(0.039) TCGA-66-2734-01 6 24358065 24358065 G A KAAG1 Silent p.A66A 0.17 TCGA-66-2734-01 6 25967109 25967109 A T TRIM38 Missense_Mutation p.Q120L 0.18 deleterious(0.03) benign(0.072) TCGA-66-2734-01 6 31902047 31902047 A G C2 Missense_Mutation p.K274E 0.17 deleterious(0) possibly_damaging(0.884) TCGA-66-2734-01 6 34507062 34507062 T C SPDEF Missense_Mutation p.Y265C 0.12 deleterious(0.03) probably_damaging(0.997) TCGA-66-2734-01 6 35214015 35214015 C T SCUBE3 Nonsense_Mutation p.R929* 0.14 TCGA-66-2734-01 6 36931007 36931007 C T PI16 Silent p.L297L 0.25 TCGA-66-2734-01 6 46982464 46982464 C - GPR110 Frame_Shift_Del p.V294Sfs*14 0.17 TCGA-66-2734-01 6 51774224 51774224 G T PKHD1 Missense_Mutation p.S2180Y 0.13 deleterious(0) probably_damaging(0.954) TCGA-66-2734-01 6 55264165 55264165 A G GFRAL Splice_Site p.X350_splice 0.22 TCGA-66-2734-01 6 82909856 82909856 A C IBTK Splice_Site p.X1009_splice 0.21 TCGA-66-2734-01 6 84234230 84234230 C A PRSS35 Missense_Mutation p.P357Q 0.26 tolerated(0.08) possibly_damaging(0.851) TCGA-66-2734-01 6 90718521 90718521 C G BACH2 Missense_Mutation p.E15Q 0.13 deleterious(0) probably_damaging(0.993) TCGA-66-2734-01 7 135277850 135277850 G T NUP205 Missense_Mutation p.Q580H 0.17 tolerated(0.52) benign(0.005) TCGA-66-2734-01 7 146805264 146805264 C A CNTNAP2 Silent p.G192G 0.29 TCGA-66-2734-01 7 2275030 2275030 C A FTSJ2 Silent p.A156A 0.18 TCGA-66-2734-01 7 23793980 23793980 A C STK31 Missense_Mutation p.I394L 0.29 deleterious(0.04) benign(0.008) TCGA-66-2734-01 7 27194745 27194745 C A HOXA7 Missense_Mutation p.R159L 0.18 deleterious(0) probably_damaging(0.999) TCGA-66-2734-01 7 45725621 45725621 T A ADCY1 Missense_Mutation p.S712T 0.16 tolerated(0.69) benign(0.028) TCGA-66-2734-01 7 50683952 50683953 AC - GRB10 Frame_Shift_Del p.C313Ffs*59 0.12 TCGA-66-2734-01 7 50800020 50800020 G T GRB10 5'UTR 0.19 TCGA-66-2734-01 7 56087412 56087412 C A PSPH Missense_Mutation p.M52I 0.08 deleterious(0) benign(0.105) TCGA-66-2734-01 8 103301779 103301779 T C UBR5 Missense_Mutation p.I1539V 0.14 tolerated(0.71) benign(0.063) TCGA-66-2734-01 8 118184797 118184797 G A SLC30A8 Silent p.V329V 0.21 TCGA-66-2734-01 8 139190841 139190841 C A FAM135B Silent p.L322L 0.13 TCGA-66-2734-01 8 53573532 53573532 T C RB1CC1 Silent p.L527L 0.27 TCGA-66-2734-01 8 53573823 53573823 C G RB1CC1 Missense_Mutation p.M459I 0.18 tolerated(0.32) probably_damaging(0.958) TCGA-66-2734-01 8 68204208 68204208 C A ARFGEF1 Missense_Mutation p.D264Y 0.18 deleterious(0.01) benign(0.025) TCGA-66-2734-01 8 74894421 74894421 A G TMEM70 3'UTR 0.16 TCGA-66-2734-01 8 75941732 75941732 G T CRISPLD1 Missense_Mutation p.Q477H 0.19 deleterious(0.01) probably_damaging(0.93) TCGA-66-2734-01 8 77766784 77766784 A C ZFHX4 Missense_Mutation p.N2543H 0.17 probably_damaging(0.952) TCGA-66-2734-01 8 77895842 77895842 C A PEX2 Missense_Mutation p.M191I 0.10 deleterious(0.03) benign(0.119) TCGA-66-2734-01 9 18928305 18928305 C A FAM154A Missense_Mutation p.K390N 0.18 deleterious(0) probably_damaging(0.963) TCGA-66-2734-01 9 21217192 21217192 A G IFNA16 Missense_Mutation p.L38S 0.22 tolerated(0.07) possibly_damaging(0.874) TCGA-66-2734-01 9 99580443 99580443 T C ZNF782 Missense_Mutation p.N621S 0.29 tolerated(0.15) benign(0.019) TCGA-66-2734-01 X 105280734 105280734 C G SERPINA7 Missense_Mutation p.V106L 0.25 tolerated(0.3) benign(0) TCGA-66-2734-01 X 106846101 106846101 G T FRMPD3 Missense_Mutation p.S1644I 0.25 deleterious(0.01) probably_damaging(0.918) TCGA-66-2734-01 X 119388984 119388985 - T ZBTB33 Frame_Shift_Ins p.H573Sfs*2 0.14 TCGA-66-2734-01 X 123554415 123554415 G T TENM1 Silent p.T1576T 0.14 TCGA-66-2734-01 X 128724198 128724198 G C OCRL Missense_Mutation p.R886P 0.18 deleterious(0) benign(0.356) TCGA-66-2734-01 X 128957775 128957775 G T ZDHHC9 Missense_Mutation p.P123T 0.14 deleterious(0) probably_damaging(0.999) TCGA-66-2734-01 X 135961564 135961564 C A RBMX Missense_Mutation p.G8V 0.15 deleterious(0) probably_damaging(0.949) TCGA-66-2734-01 X 135961565 135961565 C A RBMX Nonsense_Mutation p.G8* 0.16 TCGA-66-2734-01 X 140995469 140995469 C A MAGEC1 Missense_Mutation p.P760H 0.15 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-66-2734-01 X 141291217 141291217 C A MAGEC2 Missense_Mutation p.R186L 0.13 tolerated(0.48) benign(0.386) TCGA-66-2734-01 X 142795273 142795273 T C SPANXN2 Silent p.S135S 0.10 TCGA-66-2734-01 X 148037578 148037578 G C AFF2 Missense_Mutation p.R668T 0.16 tolerated(0.11) probably_damaging(0.994) TCGA-66-2734-01 X 149814185 149814185 G T MTM1 Missense_Mutation p.K236N 0.18 tolerated(0.07) benign(0.16) TCGA-66-2734-01 X 150345263 150345263 C A GPR50 Missense_Mutation p.P24T 0.17 deleterious(0.01) benign(0.205) TCGA-66-2734-01 X 150912080 150912080 G T CNGA2 Nonsense_Mutation p.G369* 0.15 TCGA-66-2734-01 X 151870096 151870096 C T MAGEA6 Silent p.P262P 0.13 TCGA-66-2734-01 X 153588595 153588595 T C FLNA Missense_Mutation p.S1190G 0.11 tolerated(0.15) benign(0.024) TCGA-66-2734-01 X 153689015 153689015 G A PLXNA3 Silent p.K164K 0.22 TCGA-66-2734-01 X 19013118 19013118 T A GPR64 Missense_Mutation p.Q922L 0.17 deleterious(0.03) probably_damaging(0.998) TCGA-66-2734-01 X 19018072 19018072 G T GPR64 Missense_Mutation p.P746Q 0.16 deleterious(0) probably_damaging(1) TCGA-66-2734-01 X 19373469 19373469 C A PDHA1 Silent p.G240G 0.14 TCGA-66-2734-01 X 27766454 27766454 G A DCAF8L2 Missense_Mutation p.R481K 0.26 tolerated(0.99) benign(0.02) TCGA-66-2734-01 X 2795308 2795308 C A GYG2 Missense_Mutation p.A435D 0.13 tolerated(0.39) benign(0.084) TCGA-66-2734-01 X 3007641 3007641 G T ARSF Missense_Mutation p.G312V 0.11 deleterious(0) probably_damaging(0.999) TCGA-66-2734-01 X 30873249 30873249 G T TAB3 Missense_Mutation p.P178Q 0.19 tolerated(0.05) benign(0.001) TCGA-66-2734-01 X 48545326 48545326 G T WAS Missense_Mutation p.G239V 0.17 deleterious(0) probably_damaging(1) TCGA-66-2734-01 X 49645679 49645679 A G USP27X Missense_Mutation p.I257V 0.19 tolerated(0.75) benign(0.004) TCGA-66-2734-01 X 49958015 49958015 G T AKAP4 Missense_Mutation p.S450Y 0.19 deleterious(0.02) probably_damaging(0.939) TCGA-66-2734-01 X 52825503 52825503 C T SPANXN5 3'UTR 0.16 TCGA-66-2734-01 X 53610791 53610791 G T HUWE1 Silent p.G1749G 0.22 TCGA-66-2734-01 X 56296637 56296637 C A KLF8 Missense_Mutation p.Q261K 0.21 tolerated(0.29) benign(0.003) TCGA-66-2734-01 X 5821666 5821666 G T NLGN4X Missense_Mutation p.D351E 0.16 deleterious(0.04) probably_damaging(0.989) TCGA-66-2734-01 X 64957195 64957195 C G MSN Missense_Mutation p.Q416E 0.21 tolerated(0.27) benign(0.035) TCGA-66-2734-01 X 69510564 69510564 C G KIF4A Silent p.S48S 0.20 TCGA-66-2734-01 X 75003990 75003990 C A MAGEE2 Silent p.L299L 0.09 TCGA-66-2734-01 X 79999630 79999630 A G BRWD3 Silent p.A238A 0.14 TCGA-66-2734-01 X 85218784 85218784 C A CHM Missense_Mutation p.M196I 0.14 tolerated(0.16) benign(0.003) TCGA-66-2734-01 X 89177414 89177414 G T TGIF2LX Silent p.P110P 0.15 TCGA-66-2734-01 X 99955935 99955935 C A SYTL4 Missense_Mutation p.W166L 0.16 tolerated(0.4) benign(0.276) TCGA-66-2742-01 10 104176612 104176612 G A PSD Missense_Mutation p.R62C 0.34 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-66-2742-01 10 105814742 105814742 T A COL17A1 Nonsense_Mutation p.K581* 0.16 TCGA-66-2742-01 10 124708224 124708224 C A C10orf88 Missense_Mutation p.G197W 0.42 deleterious(0) probably_damaging(1) TCGA-66-2742-01 10 126311970 126311970 C A FAM53B Missense_Mutation p.Q370H 0.38 deleterious(0.04) benign(0.179) TCGA-66-2742-01 10 18835047 18835047 T A NSUN6 Missense_Mutation p.R409W 0.15 deleterious(0.02) possibly_damaging(0.762) TCGA-66-2742-01 10 26789824 26789824 G T APBB1IP Missense_Mutation p.E79D 0.29 deleterious(0.03) probably_damaging(0.99) TCGA-66-2742-01 10 29812615 29812615 G T SVIL Nonsense_Mutation p.Y976* 0.10 TCGA-66-2742-01 10 37430680 37430680 A G ANKRD30A Silent p.A229A 0.28 TCGA-66-2742-01 10 38407647 38407647 A G ZNF37A Missense_Mutation p.Y523C 0.13 deleterious(0) probably_damaging(0.997) TCGA-66-2742-01 10 48389413 48389413 C G RBP3 Missense_Mutation p.V489L 0.47 tolerated(0.33) benign(0.133) TCGA-66-2742-01 10 82363546 82363546 G A SH2D4B Silent p.P285P 0.47 TCGA-66-2742-01 10 87407212 87407212 G T GRID1 Intron 0.12 TCGA-66-2742-01 10 97007015 97007015 C T PDLIM1 Silent p.T214T 0.17 TCGA-66-2742-01 10 99350269 99350269 C T C10orf62 Silent p.H205H 0.21 TCGA-66-2742-01 11 104822634 104822635 TT - CASP4 Frame_Shift_Del p.R121Sfs*2 0.20 TCGA-66-2742-01 11 118211200 118211200 A T CD3D Missense_Mutation p.I55N 0.34 tolerated(0.7) benign(0) TCGA-66-2742-01 11 124252427 124252427 T G OR8B2 Missense_Mutation p.K271N 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.876) TCGA-66-2742-01 11 124252924 124252924 A G OR8B2 Missense_Mutation p.F106L 0.56 deleterious_low_confidence(0.04) probably_damaging(0.986) TCGA-66-2742-01 11 17741491 17741491 C A MYOD1 Silent p.G54G 0.69 TCGA-66-2742-01 11 18955986 18955986 C G MRGPRX1 Missense_Mutation p.V116L 0.43 deleterious(0.02) benign(0.009) TCGA-66-2742-01 11 5221861 5221861 T G OR51V1 Missense_Mutation p.T24P 0.36 deleterious(0.01) possibly_damaging(0.507) TCGA-66-2742-01 11 5373352 5373352 C G OR51B6 Silent p.V205V 0.31 TCGA-66-2742-01 11 55065556 55065556 G C TRIM51HP RNA 0.33 TCGA-66-2742-01 11 55371721 55371721 A T OR4C11 Silent p.I43I 0.47 TCGA-66-2742-01 11 56230073 56230073 C A OR5M9 Missense_Mutation p.G269C 0.49 deleterious(0) probably_damaging(1) TCGA-66-2742-01 11 62569222 62569222 C T NXF1 Missense_Mutation p.E210K 0.62 tolerated(0.14) benign(0.112) TCGA-66-2742-01 11 74883491 74883491 T A SLCO2B1 Silent p.A283A 0.50 TCGA-66-2742-01 11 85435625 85435625 G A SYTL2 Silent p.H625H 0.25 TCGA-66-2742-01 11 92495111 92495111 G A FAT3 Silent p.Q1253Q 0.54 TCGA-66-2742-01 12 100709335 100709335 G T SCYL2 Splice_Site p.X366_splice 0.33 TCGA-66-2742-01 12 100897258 100897258 T A NR1H4 Missense_Mutation p.S31R 0.14 tolerated_low_confidence(0.18) benign(0.013) TCGA-66-2742-01 12 102069072 102069072 C A MYBPC1 Missense_Mutation p.R931S 0.23 deleterious(0.02) possibly_damaging(0.488) TCGA-66-2742-01 12 104133214 104133214 A G STAB2 Missense_Mutation p.T1908A 0.10 tolerated(0.28) benign(0.118) TCGA-66-2742-01 12 112481660 112481660 T C NAA25 Silent p.E673E 0.15 TCGA-66-2742-01 12 20806993 20806993 G - PDE3A Frame_Shift_Del p.C1013Sfs*9 0.13 TCGA-66-2742-01 12 21175876 21175876 G T SLCO1B7 Missense_Mutation p.G145W 0.31 deleterious(0) probably_damaging(1) TCGA-66-2742-01 12 21788434 21788434 C A LDHB 3'UTR 0.17 TCGA-66-2742-01 12 31944914 31944914 G T H3F3C Silent p.R63R 0.11 TCGA-66-2742-01 12 43858395 43858395 A G ADAMTS20 Missense_Mutation p.I503T 0.32 deleterious(0.02) benign(0.001) TCGA-66-2742-01 12 56495001 56495001 A G ERBB3 Missense_Mutation p.R1120G 0.37 tolerated(0.11) benign(0) TCGA-66-2742-01 12 58006770 58006770 T G ARHGEF25 Missense_Mutation p.L91R 0.23 tolerated(0.74) probably_damaging(0.998) TCGA-66-2742-01 12 86374058 86374058 C T MGAT4C Missense_Mutation p.R149H 0.13 tolerated(0.56) benign(0.125) TCGA-66-2742-01 12 96310926 96310926 C T CCDC38 Silent p.P95P 0.11 TCGA-66-2742-01 12 99007962 99007962 G C IKBIP Missense_Mutation p.Q152E 0.09 tolerated(0.97) benign(0.004) TCGA-66-2742-01 13 103705015 103705015 C T SLC10A2 Missense_Mutation p.M180I 0.48 tolerated(1) benign(0.006) TCGA-66-2742-01 13 27333507 27333507 G A GPR12 Missense_Mutation p.T153M 0.13 deleterious(0) probably_damaging(0.996) TCGA-66-2742-01 13 45517626 45517626 T A NUFIP1 Missense_Mutation p.Y441F 0.45 tolerated(0.65) benign(0.003) TCGA-66-2742-01 13 78492558 78492558 T C EDNRB Missense_Mutation p.K141E 0.46 tolerated(0.58) benign(0.009) TCGA-66-2742-01 13 92345764 92345764 A T GPC5 Missense_Mutation p.R217W 0.41 deleterious(0) probably_damaging(0.983) TCGA-66-2742-01 14 105615534 105615534 C T JAG2 Missense_Mutation p.E576K 0.17 deleterious(0.02) benign(0.079) TCGA-66-2742-01 14 20388876 20388876 C A OR4K5 Silent p.V37V 0.10 TCGA-66-2742-01 14 44975133 44975133 G T FSCB Missense_Mutation p.P353Q 0.42 tolerated(0.06) possibly_damaging(0.903) TCGA-66-2742-01 14 63246548 63246548 G T KCNH5 Missense_Mutation p.H639Q 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-66-2742-01 14 78187074 78187074 T C SNW1 Missense_Mutation p.R410G 0.32 deleterious(0) probably_damaging(0.973) TCGA-66-2742-01 14 78187123 78187123 A G SNW1 Silent p.A393A 0.29 TCGA-66-2742-01 14 78187124 78187124 G T SNW1 Missense_Mutation p.A393D 0.30 deleterious(0) probably_damaging(0.998) TCGA-66-2742-01 14 79432744 79432744 C A NRXN3 Silent p.V551V 0.13 TCGA-66-2742-01 14 93762411 93762411 T G BTBD7 5'UTR 0.39 TCGA-66-2742-01 14 94936152 94936152 A T SERPINA9 Missense_Mutation p.L27H 0.33 deleterious(0.01) probably_damaging(0.939) TCGA-66-2742-01 15 27185220 27185220 T G GABRA5 Silent p.V291V 0.15 TCGA-66-2742-01 15 33872224 33872224 T A RYR3 Missense_Mutation p.V439D 0.14 benign(0.002) TCGA-66-2742-01 15 34355670 34355670 G A CHRM5 Missense_Mutation p.R251K 0.17 tolerated(0.61) benign(0.009) TCGA-66-2742-01 15 34553129 34553129 C G SLC12A6 Missense_Mutation p.E137Q 0.20 tolerated(0.06) benign(0.035) TCGA-66-2742-01 15 41857334 41857334 G C TYRO3 Missense_Mutation p.V260L 0.11 tolerated(0.53) benign(0.174) TCGA-66-2742-01 15 42720257 42720257 C A ZNF106 Missense_Mutation p.A1630S 0.13 deleterious(0) possibly_damaging(0.697) TCGA-66-2742-01 15 48063828 48063828 C G SEMA6D Missense_Mutation p.P1023R 0.14 deleterious(0) benign(0.439) TCGA-66-2742-01 15 50534871 50534871 C G HDC Missense_Mutation p.Q525H 0.27 deleterious_low_confidence(0) possibly_damaging(0.664) TCGA-66-2742-01 15 75108845 75108845 C A LMAN1L Silent p.I136I 0.17 TCGA-66-2742-01 15 79296437 79296437 C T RASGRF1 Missense_Mutation p.R735H 0.24 deleterious(0) probably_damaging(0.993) TCGA-66-2742-01 15 80253456 80253456 T A BCL2A1 Missense_Mutation p.T161S 0.30 tolerated(0.41) benign(0.009) TCGA-66-2742-01 15 80450374 80450374 G T FAH Intron 0.21 TCGA-66-2742-01 16 14576629 14576629 A G PARN Silent p.Y512Y 0.21 TCGA-66-2742-01 16 1798307 1798307 G T MAPK8IP3 Missense_Mutation p.D352Y 0.43 deleterious(0) probably_damaging(0.953) TCGA-66-2742-01 16 20335162 20335162 A G GP2 Missense_Mutation p.W171R 0.29 tolerated(0.15) benign(0) TCGA-66-2742-01 16 20370844 20370844 C G PDILT Missense_Mutation p.A518P 0.31 tolerated(0.26) benign(0.008) TCGA-66-2742-01 16 20839834 20839834 A G AC004381.6 Missense_Mutation p.Y378C 0.46 deleterious(0) probably_damaging(0.954) TCGA-66-2742-01 16 29818992 29818992 C T MAZ Nonsense_Mutation p.R296* 0.19 TCGA-66-2742-01 16 3306572 3306572 T C MEFV Missense_Mutation p.S6G 0.25 tolerated(0.12) benign(0.123) TCGA-66-2742-01 16 3823884 3823884 A G CREBBP Silent p.G777G 0.31 TCGA-66-2742-01 16 48209318 48209318 G A ABCC11 Silent p.S1183S 0.40 TCGA-66-2742-01 16 603410 603410 G A CAPN15 Missense_Mutation p.R1052H 0.29 deleterious(0) probably_damaging(0.999) TCGA-66-2742-01 16 624099 624099 A T PIGQ Missense_Mutation p.T9S 0.24 tolerated_low_confidence(0.46) probably_damaging(0.986) TCGA-66-2742-01 16 75147555 75147555 T C LDHD Missense_Mutation p.I345V 0.22 deleterious(0.05) benign(0.181) TCGA-66-2742-01 16 78064611 78064611 G A CLEC3A Missense_Mutation p.R165H 0.30 tolerated(0.13) benign(0.035) TCGA-66-2742-01 16 88781041 88781041 G A CTU2 Silent p.Q416Q 0.37 TCGA-66-2742-01 17 10352030 10352030 C T MYH4 Missense_Mutation p.R1479H 0.11 deleterious(0.01) probably_damaging(0.971) TCGA-66-2742-01 17 10442558 10442558 G C MYH2 Missense_Mutation p.I460M 0.42 deleterious(0) probably_damaging(0.952) TCGA-66-2742-01 17 17127283 17127283 C A FLCN Missense_Mutation p.G191W 0.13 deleterious(0.02) possibly_damaging(0.708) TCGA-66-2742-01 17 19744820 19744820 T - ULK2 Frame_Shift_Del p.N229Tfs*4 0.29 TCGA-66-2742-01 17 27285076 27285076 C T SEZ6 Missense_Mutation p.G731S 0.14 deleterious(0) probably_damaging(1) TCGA-66-2742-01 17 42848951 42848951 G A ADAM11 Splice_Site p.X128_splice 0.31 TCGA-66-2742-01 17 56355373 56355373 C G MPO Missense_Mutation p.S340T 0.07 deleterious(0) probably_damaging(0.997) TCGA-66-2742-01 17 57158532 57158532 C A TRIM37 Missense_Mutation p.V140F 0.25 deleterious(0) probably_damaging(0.936) TCGA-66-2742-01 17 7573982 7573982 C A TP53 Nonsense_Mutation p.E349* 0.50 TCGA-66-2742-01 17 7573983 7573983 C A TP53 Missense_Mutation p.L348F 0.50 deleterious(0) probably_damaging(1) TCGA-66-2742-01 17 76795011 76795011 G A USP36 Silent p.D1073D 0.11 TCGA-66-2742-01 17 79279081 79279081 C T LINC00482 RNA 0.23 TCGA-66-2742-01 18 21115532 21115532 G C NPC1 Missense_Mutation p.I1126M 0.44 tolerated(0.12) benign(0.038) TCGA-66-2742-01 18 29848546 29848546 C A GAREM Missense_Mutation p.S640I 0.34 deleterious(0.03) benign(0.128) TCGA-66-2742-01 18 47107969 47107969 G T LIPG Missense_Mutation p.M326I 0.38 tolerated(0.42) benign(0.012) TCGA-66-2742-01 18 5397253 5397253 G T EPB41L3 Missense_Mutation p.A882E 0.23 tolerated_low_confidence(0.15) benign(0.002) TCGA-66-2742-01 18 56246130 56246130 G A ALPK2 Silent p.G626G 0.14 TCGA-66-2742-01 18 66504606 66504606 G A CCDC102B Silent p.K202K 0.11 TCGA-66-2742-01 18 72346027 72346027 A T ZNF407 Nonsense_Mutation p.K1018* 0.34 TCGA-66-2742-01 19 10071197 10071197 T A COL5A3 Missense_Mutation p.S1710C 0.28 unknown(0) TCGA-66-2742-01 19 11527293 11527293 G A RGL3 Silent p.N140N 0.22 TCGA-66-2742-01 19 15061032 15061032 C T SLC1A6 Missense_Mutation p.R557Q 0.51 tolerated(0.08) probably_damaging(0.953) TCGA-66-2742-01 19 18778681 18778681 G A KLHL26 Silent p.A158A 0.17 TCGA-66-2742-01 19 19345811 19345811 C A NCAN Nonsense_Mutation p.C1052* 0.10 TCGA-66-2742-01 19 22379456 22379456 G T ZNF676 5'UTR 0.19 TCGA-66-2742-01 19 36212435 36212435 A G KMT2B Missense_Mutation p.N729S 0.20 benign(0.007) TCGA-66-2742-01 19 37005980 37005980 G A ZNF260 Missense_Mutation p.S54F 0.30 deleterious(0) possibly_damaging(0.636) TCGA-66-2742-01 19 41186909 41186909 G A NUMBL Silent p.R151R 0.30 TCGA-66-2742-01 19 44934577 44934577 G T ZNF229 Missense_Mutation p.Q127K 0.21 deleterious(0.04) benign(0.099) TCGA-66-2742-01 19 45434280 45434280 G A APOC1P1 RNA 0.22 TCGA-66-2742-01 19 46021024 46021024 C A VASP Missense_Mutation p.Q37K 0.30 deleterious(0.01) unknown(0) TCGA-66-2742-01 19 46021195 46021195 C T VASP Silent p.I62I 0.26 TCGA-66-2742-01 19 55144519 55144519 C A LILRB1 Silent p.A337A 0.46 TCGA-66-2742-01 19 55441986 55441986 C A NLRP7 Missense_Mutation p.E897D 0.26 tolerated(0.09) benign(0.014) TCGA-66-2742-01 19 5776198 5776198 C A CATSPERD Missense_Mutation p.N656K 0.21 deleterious(0.02) benign(0.094) TCGA-66-2742-01 19 6990801 6990801 G T EMR4P RNA 0.15 TCGA-66-2742-01 19 9046849 9046849 G T MUC16 Missense_Mutation p.N11594K 0.11 benign(0.007) TCGA-66-2742-01 19 9075949 9075949 C G MUC16 Missense_Mutation p.A3833P 0.13 unknown(0) TCGA-66-2742-01 19 9084683 9084683 T C MUC16 Missense_Mutation p.I2378V 0.31 unknown(0) TCGA-66-2742-01 19 9297245 9297245 C T OR7D2 Missense_Mutation p.A263V 0.09 deleterious_low_confidence(0.03) benign(0.066) TCGA-66-2742-01 1 109242502 109242502 A T PRPF38B Missense_Mutation p.S501C 0.20 deleterious_low_confidence(0) unknown(0) TCGA-66-2742-01 1 111215627 111215627 A G KCNA3 3'UTR 0.44 TCGA-66-2742-01 1 115130044 115130044 C G DENND2C Missense_Mutation p.E907Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-66-2742-01 1 117576499 117576499 A G CD101 Missense_Mutation p.R948G 0.10 deleterious(0.02) benign(0.019) TCGA-66-2742-01 1 117631571 117631571 A G TTF2 Missense_Mutation p.Q770R 0.40 deleterious(0) probably_damaging(0.999) TCGA-66-2742-01 1 12318100 12318100 A G VPS13D Silent p.V350V 0.51 TCGA-66-2742-01 1 145537199 145537199 C T ITGA10 Silent p.G790G 0.10 TCGA-66-2742-01 1 147119207 147119207 C A ACP6 3'UTR 0.28 TCGA-66-2742-01 1 154145418 154145418 C A TPM3 Nonsense_Mutation p.E178* 0.22 TCGA-66-2742-01 1 157805945 157805945 G T CD5L Missense_Mutation p.A19E 0.21 tolerated(1) benign(0) TCGA-66-2742-01 1 158259846 158259846 G A CD1C 5'UTR 0.34 TCGA-66-2742-01 1 158368446 158368446 C G OR10T2 Missense_Mutation p.D271H 0.23 deleterious(0) probably_damaging(1) TCGA-66-2742-01 1 158435542 158435542 C - OR10K1 Frame_Shift_Del p.I65Sfs*80 0.30 TCGA-66-2742-01 1 158532691 158532691 T C OR6P1 Missense_Mutation p.H235R 0.43 tolerated(0.79) benign(0.001) TCGA-66-2742-01 1 159175948 159175948 G A DARC Missense_Mutation p.G242D 0.21 tolerated(0.64) probably_damaging(0.917) TCGA-66-2742-01 1 160054620 160054620 G A KCNJ9 Missense_Mutation p.R267K 0.27 tolerated(0.96) benign(0.002) TCGA-66-2742-01 1 160062403 160062403 A T IGSF8 Silent p.S465S 0.69 TCGA-66-2742-01 1 169581631 169581631 C T SELP Missense_Mutation p.C262Y 0.21 deleterious(0) possibly_damaging(0.622) TCGA-66-2742-01 1 172520726 172520726 A G SUCO Missense_Mutation p.N46S 0.11 tolerated_low_confidence(0.51) benign(0.008) TCGA-66-2742-01 1 197056046 197056046 T A ASPM Silent p.T3406T 0.22 TCGA-66-2742-01 1 200869268 200869268 A G C1orf106 Missense_Mutation p.K73E 0.12 deleterious(0.03) benign(0.032) TCGA-66-2742-01 1 204971757 204971757 C A NFASC Missense_Mutation p.A1057D 0.15 tolerated(0.21) unknown(0) TCGA-66-2742-01 1 204971758 204971758 C A NFASC Silent p.A1057A 0.15 TCGA-66-2742-01 1 207641891 207641891 A T CR2 Silent p.P155P 0.20 TCGA-66-2742-01 1 210948803 210948803 A G KCNH1 Missense_Mutation p.C667R 0.18 deleterious(0) probably_damaging(0.985) TCGA-66-2742-01 1 228548045 228548045 C T OBSCN Intron 0.35 TCGA-66-2742-01 1 230401027 230401027 C G GALNT2 Missense_Mutation p.Q452E 0.28 deleterious(0) probably_damaging(0.995) TCGA-66-2742-01 1 230914830 230914830 G T CAPN9 Missense_Mutation p.Q355H 0.35 deleterious(0.03) benign(0.05) TCGA-66-2742-01 1 230914831 230914831 G T CAPN9 Nonsense_Mutation p.G356* 0.34 TCGA-66-2742-01 1 231042639 231042639 A G TTC13 3'UTR 0.38 TCGA-66-2742-01 1 235860456 235860456 C A LYST Missense_Mutation p.Q3497H 0.36 deleterious(0.02) benign(0.326) TCGA-66-2742-01 1 236389765 236389765 G T ERO1LB Missense_Mutation p.R286S 0.27 deleterious(0) probably_damaging(0.997) TCGA-66-2742-01 1 248436713 248436713 C T OR2T33 Missense_Mutation p.S135N 0.15 tolerated(0.63) benign(0.029) TCGA-66-2742-01 1 31212756 31212756 A G LAPTM5 Missense_Mutation p.L96P 0.35 deleterious(0) benign(0.163) TCGA-66-2742-01 1 33945088 33945088 G T ZSCAN20 Nonsense_Mutation p.E67* 0.33 TCGA-66-2742-01 1 63284828 63284828 G T ATG4C Missense_Mutation p.G183W 0.19 deleterious(0) possibly_damaging(0.779) TCGA-66-2742-01 1 74801765 74801765 A G FPGT-TNNI3K Missense_Mutation p.H319R 0.34 deleterious(0.05) probably_damaging(0.993) TCGA-66-2742-01 1 86196133 86196133 A G COL24A1 3'UTR 0.40 TCGA-66-2742-01 1 93160930 93160930 A C EVI5 Silent p.T326T 0.23 TCGA-66-2742-01 1 93730454 93730454 C A CCDC18 Missense_Mutation p.T1347N 0.15 deleterious(0) benign(0.162) TCGA-66-2742-01 1 94473855 94473855 T C ABCA4 Splice_Site p.X1946_splice 0.27 TCGA-66-2742-01 20 31814784 31814784 T C BPIFA3 Silent p.L224L 0.22 TCGA-66-2742-01 20 33875512 33875512 A T FAM83C Missense_Mutation p.M357K 0.33 deleterious(0) benign(0.012) TCGA-66-2742-01 20 37179733 37179733 G A RALGAPB Missense_Mutation p.R1010H 0.18 tolerated(0.06) benign(0.444) TCGA-66-2742-01 20 37353631 37353631 C A SLC32A1 Silent p.G88G 0.41 TCGA-66-2742-01 20 40713432 40713432 G T PTPRT Silent p.A1342A 0.15 TCGA-66-2742-01 20 50769544 50769544 T A ZFP64 Missense_Mutation p.D396V 0.24 deleterious(0) possibly_damaging(0.536) TCGA-66-2742-01 20 9371211 9371211 C A PLCB4 Nonsense_Mutation p.C424* 0.35 TCGA-66-2742-01 21 10921941 10921941 G T TPTE Missense_Mutation p.T361N 0.09 tolerated(0.17) benign(0.117) TCGA-66-2742-01 21 28296372 28296372 C T ADAMTS5 Silent p.%3D 0.35 TCGA-66-2742-01 22 19119776 19119776 G - TSSK2 Frame_Shift_Del p.E290Rfs*16 0.36 TCGA-66-2742-01 22 29139937 29139937 C G HSCB Missense_Mutation p.H102D 0.23 deleterious(0) probably_damaging(0.999) TCGA-66-2742-01 22 34157438 34157438 C T LARGE Missense_Mutation p.R9Q 0.10 tolerated_low_confidence(0.08) benign(0.271) TCGA-66-2742-01 2 1204904 1204904 C T SNTG2 Missense_Mutation p.T236M 0.07 deleterious(0.01) benign(0.077) TCGA-66-2742-01 2 125367414 125367414 A C CNTNAP5 Missense_Mutation p.Q597P 0.29 tolerated(0.11) benign(0.282) TCGA-66-2742-01 2 135744864 135744864 A G MAP3K19 Silent p.N526N 0.35 TCGA-66-2742-01 2 136545695 136545695 A G LCT 3'UTR 0.20 TCGA-66-2742-01 2 160755282 160755282 C A LY75-CD302 Missense_Mutation p.G128V 0.17 deleterious(0) probably_damaging(0.998) TCGA-66-2742-01 2 170366615 170366615 G A KLHL41 Silent p.L109L 0.16 TCGA-66-2742-01 2 172017079 172017079 G A TLK1 5'UTR 0.50 TCGA-66-2742-01 2 178494055 178494055 A C PDE11A 3'UTR 0.33 TCGA-66-2742-01 2 179593012 179593012 C A TTN Missense_Mutation p.Q6513H 0.32 TCGA-66-2742-01 2 201337764 201337764 G T SPATS2L Missense_Mutation p.A424S 0.29 tolerated(0.22) benign(0.046) TCGA-66-2742-01 2 202005138 202005138 C T CFLAR Silent p.L194L 0.10 TCGA-66-2742-01 2 209190463 209190463 G T PIKFYVE Silent p.P976P 0.13 TCGA-66-2742-01 2 21231683 21231683 C T APOB Nonsense_Mutation p.W2686* 0.17 TCGA-66-2742-01 2 216289955 216289955 G T FN1 Missense_Mutation p.P300T 0.10 tolerated(0.18) benign(0.174) TCGA-66-2742-01 2 27535960 27535960 C A MPV17 Silent p.L29L 0.36 TCGA-66-2742-01 2 29917817 29917817 C T ALK Missense_Mutation p.R284K 0.15 tolerated(1) benign(0.055) TCGA-66-2742-01 2 56420342 56420342 C A CCDC85A Missense_Mutation p.P336Q 0.19 deleterious_low_confidence(0) benign(0.043) TCGA-66-2742-01 2 71654035 71654035 G A ZNF638 Missense_Mutation p.R1679H 0.30 deleterious(0.05) probably_damaging(0.964) TCGA-66-2742-01 2 74043169 74043169 C A C2orf78 Silent p.R607R 0.11 TCGA-66-2742-01 2 75101429 75101429 G T HK2 Missense_Mutation p.R243L 0.21 deleterious(0.01) benign(0.122) TCGA-66-2742-01 2 80530229 80530229 C A LRRTM1 Missense_Mutation p.C239F 0.17 tolerated(0.16) benign(0) TCGA-66-2742-01 2 87017709 87017709 T C CD8A Missense_Mutation p.N49D 0.13 tolerated(0.38) benign(0.02) TCGA-66-2742-01 2 89278144 89278144 G C IGKV3-7 Missense_Mutation p.A64G 0.30 deleterious(0.02) benign(0.086) TCGA-66-2742-01 2 95542358 95542358 A G TEKT4 Silent p.L384L 0.35 TCGA-66-2742-01 3 111632221 111632221 A T PHLDB2 Missense_Mutation p.D464V 0.46 deleterious(0) benign(0.028) TCGA-66-2742-01 3 123650002 123650002 C A CCDC14 Silent p.G582G 0.21 TCGA-66-2742-01 3 130743391 130743391 G A ASTE1 Missense_Mutation p.H254Y 0.53 tolerated(1) possibly_damaging(0.74) TCGA-66-2742-01 3 141697362 141697362 C T TFDP2 Silent p.S173S 0.07 TCGA-66-2742-01 3 147108988 147108988 A C ZIC4 Missense_Mutation p.F295C 0.63 deleterious(0.01) probably_damaging(0.999) TCGA-66-2742-01 3 148917542 148917542 G A CP Silent p.N486N 0.12 TCGA-66-2742-01 3 151148142 151148142 T C MED12L Missense_Mutation p.V2120A 0.09 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-66-2742-01 3 152174130 152174130 G T MBNL1 Missense_Mutation p.A364S 0.19 deleterious(0.03) probably_damaging(0.995) TCGA-66-2742-01 3 169569470 169569470 G T LRRC31 Missense_Mutation p.P366T 0.23 tolerated(0.08) possibly_damaging(0.78) TCGA-66-2742-01 3 172165779 172165779 T A GHSR Missense_Mutation p.Y142F 0.67 deleterious(0.01) probably_damaging(1) TCGA-66-2742-01 3 183774808 183774809 - G HTR3C Frame_Shift_Ins p.T179Sfs*57 0.16 TCGA-66-2742-01 3 183823602 183823602 C A HTR3E Missense_Mutation p.P283H 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-66-2742-01 3 187416621 187416621 C A RTP2 Nonsense_Mutation p.E115* 0.43 TCGA-66-2742-01 3 193061839 193061839 C G ATP13A5 Missense_Mutation p.E274Q 0.21 tolerated(0.97) benign(0.002) TCGA-66-2742-01 3 197427466 197427466 G A KIAA0226 Intron 0.64 TCGA-66-2742-01 3 33134425 33134425 T C TMPPE Silent p.T421T 0.48 TCGA-66-2742-01 3 38539221 38539221 C T EXOG Missense_Mutation p.R89W 0.27 deleterious(0) probably_damaging(1) TCGA-66-2742-01 3 49947570 49947570 C T MON1A Missense_Mutation p.S551N 0.23 deleterious(0.04) probably_damaging(0.978) TCGA-66-2742-01 3 97806723 97806723 G A OR5AC2 Missense_Mutation p.R236K 0.13 tolerated(0.34) benign(0.181) TCGA-66-2742-01 4 114163341 114163341 C A ANK2 Silent p.G289G 0.47 TCGA-66-2742-01 4 126370874 126370874 G T FAT4 Missense_Mutation p.E2901D 0.43 possibly_damaging(0.728) TCGA-66-2742-01 4 13616347 13616347 C A BOD1L1 Missense_Mutation p.S216I 0.21 benign(0.287) TCGA-66-2742-01 4 169305933 169305933 C T DDX60L Missense_Mutation p.D1316N 0.31 deleterious(0) probably_damaging(0.979) TCGA-66-2742-01 4 183575036 183575036 T C TENM3 Silent p.S367S 0.41 TCGA-66-2742-01 4 8613866 8613866 C A CPZ Missense_Mutation p.A447E 0.79 deleterious(0) probably_damaging(1) TCGA-66-2742-01 5 127648412 127648412 C T FBN2 Missense_Mutation p.G1598E 0.40 deleterious(0) probably_damaging(1) TCGA-66-2742-01 5 140209961 140209961 A T PCDHA6 Missense_Mutation p.E762V 0.16 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-66-2742-01 5 140736606 140736606 G T PCDHGA4 Missense_Mutation p.E613D 0.43 deleterious_low_confidence(0.03) benign(0.327) TCGA-66-2742-01 5 141316862 141316862 G T KIAA0141 Missense_Mutation p.A417S 0.33 deleterious(0.01) probably_damaging(1) TCGA-66-2742-01 5 1420684 1420684 A G SLC6A3 Silent p.S309S 0.21 TCGA-66-2742-01 5 19483430 19483432 AGA - CDH18 In_Frame_Del p.L621del 0.18 TCGA-66-2742-01 5 19839219 19839219 C A CDH18 5'UTR 0.23 TCGA-66-2742-01 5 35065607 35065607 C A PRLR Nonsense_Mutation p.E485* 0.32 TCGA-66-2742-01 5 39383066 39383066 C A DAB2 Missense_Mutation p.S332I 0.25 tolerated(0.26) benign(0.439) TCGA-66-2742-01 5 55466589 55466589 G T ANKRD55 Silent p.A118A 0.38 TCGA-66-2742-01 5 90049535 90049535 A G GPR98 Missense_Mutation p.I3756V 0.45 possibly_damaging(0.456) TCGA-66-2742-01 6 110540601 110540601 A T CDC40 Silent p.V375V 0.53 TCGA-66-2742-01 6 116747880 116747880 A G DSE Missense_Mutation p.Y187C 0.46 tolerated(0.17) possibly_damaging(0.794) TCGA-66-2742-01 6 129649434 129649434 G T LAMA2 Silent p.P1396P 0.55 TCGA-66-2742-01 6 159646728 159646728 C A FNDC1 Nonsense_Mutation p.S349* 0.53 TCGA-66-2742-01 6 24596213 24596213 G T KIAA0319 Missense_Mutation p.P230H 0.52 deleterious(0.01) possibly_damaging(0.619) TCGA-66-2742-01 6 35260412 35260412 T C ZNF76 Missense_Mutation p.V338A 0.49 deleterious(0) benign(0.442) TCGA-66-2742-01 6 36981871 36981871 C G FGD2 Missense_Mutation p.A273G 0.54 deleterious(0) probably_damaging(0.999) TCGA-66-2742-01 6 51618098 51618098 C T PKHD1 Missense_Mutation p.G2951R 0.39 deleterious(0) probably_damaging(1) TCGA-66-2742-01 6 97424046 97424046 A G KLHL32 Missense_Mutation p.Y66C 0.12 deleterious(0) probably_damaging(0.999) TCGA-66-2742-01 7 111629078 111629078 C A DOCK4 Missense_Mutation p.W152C 0.35 deleterious(0.02) benign(0.027) TCGA-66-2742-01 7 122755604 122755604 C G SLC13A1 Missense_Mutation p.A586P 0.25 deleterious(0) probably_damaging(0.982) TCGA-66-2742-01 7 128415130 128415130 C T OPN1SW Missense_Mutation p.R144H 0.31 deleterious(0.02) benign(0.077) TCGA-66-2742-01 7 135272741 135272741 G A NUP205 Splice_Site p.X491_splice 0.42 TCGA-66-2742-01 7 143701479 143701479 C A OR6B1 Silent p.L130L 0.30 TCGA-66-2742-01 7 147336265 147336265 A T CNTNAP2 Silent p.P655P 0.21 TCGA-66-2742-01 7 148312428 148312428 C T C7orf33 Missense_Mutation p.H157Y 0.31 deleterious_low_confidence(0.03) benign(0.291) TCGA-66-2742-01 7 18975451 18975451 G T HDAC9 Missense_Mutation p.K941N 0.26 deleterious(0.02) benign(0.064) TCGA-66-2742-01 7 23776540 23776540 G A STK31 Missense_Mutation p.G287D 0.33 tolerated(0.38) benign(0.022) TCGA-66-2742-01 7 30102343 30102343 A T PLEKHA8 Missense_Mutation p.I429F 0.27 tolerated(0.07) probably_damaging(0.97) TCGA-66-2742-01 7 38288949 38288949 T G TRGC2 Missense_Mutation p.T76P 0.34 deleterious(0) probably_damaging(0.998) TCGA-66-2742-01 7 55259524 55259524 T A EGFR Missense_Mutation p.L861Q 0.28 deleterious(0) possibly_damaging(0.831) TCGA-66-2742-01 7 56149867 56149873 TTTCCCG - PHKG1 Frame_Shift_Del p.Y239* 0.28 TCGA-66-2742-01 8 10470689 10470689 C T RP1L1 Missense_Mutation p.D307N 0.20 probably_damaging(0.993) TCGA-66-2742-01 8 110476886 110476886 G T PKHD1L1 Missense_Mutation p.G2609C 0.24 deleterious(0) probably_damaging(0.999) TCGA-66-2742-01 8 113697704 113697704 G A CSMD3 Missense_Mutation p.H805Y 0.36 deleterious(0.04) probably_damaging(0.938) TCGA-66-2742-01 8 13357058 13357058 C T DLC1 Missense_Mutation p.V175I 0.13 tolerated_low_confidence(0.49) benign(0) TCGA-66-2742-01 8 13357059 13357059 C A DLC1 Silent p.L174L 0.13 TCGA-66-2742-01 8 135533199 135533199 C A ZFAT Missense_Mutation p.W1054L 0.33 deleterious(0) possibly_damaging(0.904) TCGA-66-2742-01 8 139611003 139611003 G C COL22A1 Missense_Mutation p.P1442A 0.43 unknown(0) TCGA-66-2742-01 8 1728421 1728421 C G CLN8 Silent p.G183G 0.20 TCGA-66-2742-01 8 42294928 42294928 C A SLC20A2 Nonsense_Mutation p.E368* 0.27 TCGA-66-2742-01 8 59728236 59728236 C G TOX Silent p.L351L 0.30 TCGA-66-2742-01 8 63938734 63938734 G A GGH Missense_Mutation p.P161L 0.21 deleterious(0) possibly_damaging(0.789) TCGA-66-2742-01 8 65509278 65509278 C A CYP7B1 Missense_Mutation p.G481V 0.26 tolerated(0.24) benign(0.091) TCGA-66-2742-01 8 65509282 65509282 T A CYP7B1 Missense_Mutation p.I480L 0.26 tolerated(0.53) benign(0.01) TCGA-66-2742-01 8 75737654 75737654 G C PI15 Missense_Mutation p.R57T 0.12 deleterious(0) probably_damaging(0.991) TCGA-66-2742-01 8 80553671 80553671 G C STMN2 Missense_Mutation p.L58F 0.42 deleterious(0) probably_damaging(0.969) TCGA-66-2742-01 9 102891974 102891974 G A INVS Intron 0.30 TCGA-66-2742-01 9 132400573 132400573 G C ASB6 Missense_Mutation p.S254R 0.39 deleterious(0.03) benign(0.009) TCGA-66-2742-01 9 136726513 136726513 C A VAV2 Silent p.A121A 0.25 TCGA-66-2742-01 X 102529492 102529492 G A TCEAL5 5'UTR 0.63 TCGA-66-2742-01 X 107334727 107334727 T A PSMD10 Silent p.L8L 0.63 TCGA-66-2742-01 X 109246913 109246913 T C TMEM164 5'UTR 0.83 TCGA-66-2742-01 X 125686112 125686112 G A DCAF12L1 Silent p.S160S 0.42 TCGA-66-2742-01 X 135570420 135570420 C A BRS3 Silent p.A49A 0.59 TCGA-66-2742-01 X 138692464 138692464 A T MCF2 Nonsense_Mutation p.L542* 0.33 TCGA-66-2742-01 X 149013145 149013145 T C MAGEA8 Silent p.A33A 0.25 TCGA-66-2742-01 X 37027907 37027907 G A FAM47C Missense_Mutation p.C475Y 0.47 tolerated(1) benign(0.01) TCGA-66-2742-01 X 38546888 38546888 G T TSPAN7 Silent p.R239R 0.65 TCGA-66-2742-01 X 44941830 44941830 G T KDM6A Nonsense_Mutation p.E1052* 0.66 TCGA-66-2744-01 10 115365986 115365986 C G NRAP Missense_Mutation p.G1253A 0.22 deleterious(0.03) benign(0.405) TCGA-66-2744-01 10 118960727 118960727 G T KCNK18 Missense_Mutation p.W94L 0.28 deleterious(0) probably_damaging(0.99) TCGA-66-2744-01 10 124597003 124597003 C G CUZD1 Missense_Mutation p.K172N 0.30 tolerated(0.5) benign(0.015) TCGA-66-2744-01 10 124758038 124758038 C T IKZF5 Missense_Mutation p.G35E 0.10 tolerated(0.06) benign(0.025) TCGA-66-2744-01 10 55582261 55582261 G A PCDH15 Missense_Mutation p.P1744L 0.14 deleterious_low_confidence(0) unknown(0) TCGA-66-2744-01 10 5789240 5789240 C T FAM208B Silent p.L1286L 0.17 TCGA-66-2744-01 10 70451506 70451506 A G TET1 Missense_Mutation p.N2116D 0.23 deleterious(0.01) possibly_damaging(0.606) TCGA-66-2744-01 10 71690217 71690217 A G COL13A1 Missense_Mutation p.D520G 0.38 tolerated(0.12) benign(0.03) TCGA-66-2744-01 10 72100443 72100443 T A LRRC20 Missense_Mutation p.K33M 0.18 deleterious(0.04) possibly_damaging(0.781) TCGA-66-2744-01 10 82033568 82033568 G - MAT1A Frame_Shift_Del p.P386Hfs*55 0.15 TCGA-66-2744-01 10 85993948 85993948 C A LRIT1 Missense_Mutation p.G259V 0.24 tolerated(0.06) probably_damaging(0.93) TCGA-66-2744-01 10 98105662 98105662 C G OPALIN 3'UTR 0.19 TCGA-66-2744-01 11 108224510 108224510 G A ATM Missense_Mutation p.G2897S 0.34 deleterious(0) probably_damaging(0.999) TCGA-66-2744-01 11 1157747 1157747 G T MUC5AC Missense_Mutation p.G272C 0.36 deleterious(0) probably_damaging(0.921) TCGA-66-2744-01 11 1271174 1271174 C G MUC5B Missense_Mutation p.S4355C 0.33 benign(0.028) TCGA-66-2744-01 11 133805642 133805642 C G IGSF9B Missense_Mutation p.R279S 0.47 deleterious(0.01) probably_damaging(0.925) TCGA-66-2744-01 11 32452101 32452101 T A WT1 Intron 0.24 TCGA-66-2744-01 11 4408217 4408217 C A TRIM21 Missense_Mutation p.V247L 0.36 deleterious(0.02) benign(0.004) TCGA-66-2744-01 11 46900684 46900684 C T LRP4 Silent p.R999R 0.22 TCGA-66-2744-01 11 49974260 49974260 A T OR4C13 Missense_Mutation p.M96L 0.34 tolerated_low_confidence(0.06) benign(0.033) TCGA-66-2744-01 11 55135552 55135552 G A OR4A15 Missense_Mutation p.V65M 0.17 deleterious_low_confidence(0.05) benign(0.117) TCGA-66-2744-01 11 55136373 55136373 G A OR4A15 Silent p.G338G 0.17 TCGA-66-2744-01 11 55587161 55587161 C A OR5D18 Nonsense_Mutation p.S19* 0.43 TCGA-66-2744-01 11 55890505 55890505 G A OR8H3 Silent p.V219V 0.18 TCGA-66-2744-01 11 55944289 55944289 C G OR5J2 Missense_Mutation p.L66V 0.21 deleterious(0) probably_damaging(0.986) TCGA-66-2744-01 11 59224488 59224488 C A OR4D6 Missense_Mutation p.R19S 0.26 tolerated(0.18) benign(0.017) TCGA-66-2744-01 11 6190909 6190909 G T OR52B2 Silent p.I216I 0.34 TCGA-66-2744-01 11 64880868 64880868 G C TM7SF2 Missense_Mutation p.A161P 0.15 deleterious(0) probably_damaging(0.985) TCGA-66-2744-01 11 66254031 66254031 C T DPP3 Silent p.I127I 0.15 TCGA-66-2744-01 11 66411414 66411414 A T RBM14-RBM4 Silent p.S277S 0.28 TCGA-66-2744-01 11 67258318 67258318 G C AIP Missense_Mutation p.E283Q 0.13 deleterious(0.05) benign(0.03) TCGA-66-2744-01 11 70007429 70007429 G A ANO1 Missense_Mutation p.E581K 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-66-2744-01 11 74994459 74994459 G A ARRB1 Missense_Mutation p.R76C 0.55 deleterious(0) probably_damaging(0.995) TCGA-66-2744-01 11 75430954 75430954 C T MOGAT2 Intron 0.69 TCGA-66-2744-01 11 85963214 85963214 G - EED Frame_Shift_Del p.G98Efs*14 0.18 TCGA-66-2744-01 12 105282956 105282956 C A SLC41A2 Splice_Site p.X246_splice 0.26 TCGA-66-2744-01 12 110656005 110656005 G T IFT81 Missense_Mutation p.G669C 0.24 deleterious(0.02) possibly_damaging(0.839) TCGA-66-2744-01 12 40020067 40020067 C G C12orf40 5'UTR 0.36 TCGA-66-2744-01 12 4461510 4461510 G T C12orf5 Nonsense_Mutation p.G156* 0.23 TCGA-66-2744-01 12 45173639 45173639 A T NELL2 Missense_Mutation p.C218S 0.16 deleterious(0) probably_damaging(0.997) TCGA-66-2744-01 12 49443771 49443771 G C KMT2D Missense_Mutation p.I1200M 0.28 probably_damaging(0.965) TCGA-66-2744-01 12 58010573 58010573 G T ARHGEF25 Missense_Mutation p.G586C 0.15 deleterious_low_confidence(0) possibly_damaging(0.478) TCGA-66-2744-01 12 8329842 8329842 G T ZNF705A Missense_Mutation p.R189L 0.32 deleterious(0.02) benign(0.037) TCGA-66-2744-01 13 108863508 108863508 T A LIG4 Nonsense_Mutation p.R37* 0.37 TCGA-66-2744-01 13 109859134 109859134 G T MYO16 Missense_Mutation p.G1843W 0.55 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-66-2744-01 13 36747888 36747888 G A SOHLH2 Missense_Mutation p.T391M 0.09 deleterious_low_confidence(0.01) benign(0.014) TCGA-66-2744-01 13 50102723 50102723 A - PHF11 Frame_Shift_Del p.K307Nfs*55 0.31 TCGA-66-2744-01 13 78335084 78335084 G T SLAIN1 Missense_Mutation p.M348I 0.29 tolerated(0.97) benign(0.004) TCGA-66-2744-01 13 97639814 97639815 - T OXGR1 Frame_Shift_Ins p.S67Kfs*41 0.25 TCGA-66-2744-01 14 101493144 101493144 G T MIR329-1 RNA 0.34 TCGA-66-2744-01 14 105518036 105518036 G T GPR132 Nonsense_Mutation p.Y146* 0.44 TCGA-66-2744-01 14 106967470 106967470 C T IGHV1-46 Nonsense_Mutation p.W5* 0.41 TCGA-66-2744-01 14 20248579 20248579 C A OR4M1 Missense_Mutation p.S33Y 0.43 tolerated(0.09) benign(0.025) TCGA-66-2744-01 14 23519129 23519129 C T CDH24 Missense_Mutation p.V501M 0.53 deleterious(0) benign(0.05) TCGA-66-2744-01 14 30068938 30068938 C G PRKD1 Missense_Mutation p.G664A 0.18 deleterious(0.01) probably_damaging(0.993) TCGA-66-2744-01 14 42357069 42357069 C A LRFN5 Missense_Mutation p.T414N 0.32 tolerated(0.11) benign(0.015) TCGA-66-2744-01 14 67812573 67812576 CCAG - ATP6V1D Frame_Shift_Del p.T122Ifs*2 0.23 TCGA-66-2744-01 14 70530577 70530577 C T SLC8A3 Intron 0.09 TCGA-66-2744-01 15 101529616 101529616 T A LRRK1 Intron 0.54 TCGA-66-2744-01 15 20170351 20170351 C T IGHV1OR15-9 Missense_Mutation p.G2S 0.27 deleterious(0.03) benign(0.028) TCGA-66-2744-01 15 25230274 25230274 G C SNORD64 RNA 0.21 TCGA-66-2744-01 15 25324119 25324119 G T SNORD116-12 3'Flank 0.39 TCGA-66-2744-01 15 58256106 58256106 G T ALDH1A2 Missense_Mutation p.P355T 0.38 tolerated(0.53) possibly_damaging(0.83) TCGA-66-2744-01 15 65489533 65489533 C A CILP Missense_Mutation p.G1031C 0.26 deleterious(0) probably_damaging(1) TCGA-66-2744-01 15 70347520 70347520 G A TLE3 Silent p.H485H 0.29 TCGA-66-2744-01 16 10996609 10996609 G A CIITA Nonsense_Mutation p.W241* 0.15 TCGA-66-2744-01 16 15180227 15180227 T C RRN3 Missense_Mutation p.I113V 0.21 tolerated(0.38) benign(0.062) TCGA-66-2744-01 16 20498072 20498072 C G ACSM2A 3'UTR 0.17 TCGA-66-2744-01 16 2946558 2946558 C T FLYWCH2 Silent p.P36P 0.17 TCGA-66-2744-01 16 30745064 30745064 C A SRCAP Missense_Mutation p.Q2147K 0.22 probably_damaging(0.928) TCGA-66-2744-01 16 70010560 70010560 T C PDXDC2P RNA 0.09 TCGA-66-2744-01 16 87723839 87723839 C T JPH3 Missense_Mutation p.P625S 0.33 tolerated(0.27) benign(0) TCGA-66-2744-01 17 18023401 18023401 G A MYO15A Missense_Mutation p.M429I 0.46 benign(0.019) TCGA-66-2744-01 17 20799191 20799191 C A CCDC144NL Missense_Mutation p.G48V 0.21 deleterious_low_confidence(0.02) probably_damaging(0.964) TCGA-66-2744-01 17 2228309 2228309 A G SRR 3'UTR 0.50 TCGA-66-2744-01 17 41103875 41103875 C G AARSD1 Missense_Mutation p.G349R 0.45 deleterious(0.01) benign(0.175) TCGA-66-2744-01 17 56247485 56247485 A C OR4D2 Missense_Mutation p.I157L 0.19 tolerated(0.06) benign(0.191) TCGA-66-2744-01 17 65683196 65683196 G A PITPNC1 Intron 0.46 TCGA-66-2744-01 17 7578407 7578407 G C TP53 Missense_Mutation p.R175G 0.26 deleterious(0) probably_damaging(0.985) TCGA-66-2744-01 18 2539011 2539011 C A METTL4 Missense_Mutation p.E469D 0.24 tolerated(0.14) benign(0.002) TCGA-66-2744-01 18 32438301 32438301 C G DTNA Missense_Mutation p.Q442E 0.48 tolerated(0.05) possibly_damaging(0.827) TCGA-66-2744-01 18 56149153 56149153 T A ALPK2 Nonsense_Mutation p.K2139* 0.26 TCGA-66-2744-01 19 12256633 12256633 A C ZNF625 Missense_Mutation p.L200V 0.48 deleterious(0) probably_damaging(0.953) TCGA-66-2744-01 19 14991543 14991543 C G OR7A17 Missense_Mutation p.G209R 0.20 deleterious_low_confidence(0) probably_damaging(0.925) TCGA-66-2744-01 19 30935742 30935742 A T ZNF536 Missense_Mutation p.N425Y 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-66-2744-01 19 41071430 41071430 G C SPTBN4 Missense_Mutation p.R2006P 0.53 deleterious(0) benign(0.001) TCGA-66-2744-01 19 50909578 50909578 A T POLD1 Missense_Mutation p.Q461L 0.21 tolerated(0.3) benign(0.02) TCGA-66-2744-01 19 52023372 52023372 G T SIGLEC6 Silent p.T442T 0.36 TCGA-66-2744-01 19 55539070 55539070 C A GP6 Missense_Mutation p.R162S 0.30 deleterious_low_confidence(0.01) benign(0.072) TCGA-66-2744-01 19 9072230 9072230 G C MUC16 Silent p.L5072L 0.22 TCGA-66-2744-01 1 118635898 118635898 T A SPAG17 Missense_Mutation p.M352L 0.46 deleterious(0.01) probably_damaging(0.955) TCGA-66-2744-01 1 1233244 1233244 G A ACAP3 Silent p.I362I 0.58 TCGA-66-2744-01 1 142803229 142803229 T C RP11-423O2.5 RNA 0.13 TCGA-66-2744-01 1 143767766 143767766 T A PPIAL4G Missense_Mutation p.K28M 0.12 deleterious_low_confidence(0.01) probably_damaging(0.96) TCGA-66-2744-01 1 144828697 144828697 C T NBPF9 Silent p.F655F 0.12 TCGA-66-2744-01 1 145532206 145532206 G A ITGA10 Missense_Mutation p.E284K 0.20 deleterious(0.02) benign(0.392) TCGA-66-2744-01 1 152281652 152281652 G T FLG Missense_Mutation p.Q1904K 0.22 benign(0.149) TCGA-66-2744-01 1 156823678 156823678 A G INSRR Missense_Mutation p.V168A 0.19 tolerated(0.24) probably_damaging(0.991) TCGA-66-2744-01 1 156899076 156899076 C T LRRC71 Missense_Mutation p.S334F 0.17 deleterious(0.01) possibly_damaging(0.569) TCGA-66-2744-01 1 161039355 161039355 G A ARHGAP30 Silent p.C20C 0.32 TCGA-66-2744-01 1 175335135 175335135 G T TNR Silent p.T731T 0.23 TCGA-66-2744-01 1 177199026 177199026 G A BRINP2 Missense_Mutation p.C5Y 0.27 tolerated_low_confidence(0.07) benign(0.005) TCGA-66-2744-01 1 179659920 179659920 G T TDRD5 Missense_Mutation p.D984Y 0.16 deleterious(0.01) probably_damaging(0.967) TCGA-66-2744-01 1 198678943 198678943 A C PTPRC Silent p.T387T 0.28 TCGA-66-2744-01 1 200377463 200377463 T C ZNF281 Silent p.E457E 0.25 TCGA-66-2744-01 1 201330239 201330239 A T TNNT2 Intron 0.25 TCGA-66-2744-01 1 248202064 248202064 C A OR2L2 Silent p.I165I 0.34 TCGA-66-2744-01 1 34052159 34052159 C G CSMD2 Silent p.L2334L 0.33 TCGA-66-2744-01 1 38187350 38187350 C A EPHA10 Nonsense_Mutation p.E710* 0.46 TCGA-66-2744-01 1 55224198 55224198 C G PARS2 Missense_Mutation p.D213H 0.41 deleterious(0.03) probably_damaging(0.999) TCGA-66-2744-01 20 333854 333854 A G NRSN2 Missense_Mutation p.I64V 0.14 tolerated(1) benign(0.018) TCGA-66-2744-01 20 44333650 44333650 T C WFDC10B 5'UTR 0.39 TCGA-66-2744-01 20 47269940 47269940 C G PREX1 Missense_Mutation p.E769Q 0.34 tolerated(0.17) possibly_damaging(0.752) TCGA-66-2744-01 22 37603527 37603527 G T SSTR3 Missense_Mutation p.L106M 0.13 deleterious(0.03) probably_damaging(0.951) TCGA-66-2744-01 22 37603528 37603528 G T SSTR3 Silent p.A105A 0.16 TCGA-66-2744-01 22 41601353 41601353 G A L3MBTL2 5'UTR 0.20 TCGA-66-2744-01 22 41652071 41652071 C T RANGAP1 Missense_Mutation p.E343K 0.19 tolerated(0.07) possibly_damaging(0.714) TCGA-66-2744-01 2 141291599 141291599 C A LRP1B Missense_Mutation p.D2585Y 0.19 probably_damaging(0.961) TCGA-66-2744-01 2 152490209 152490209 C T NEB Missense_Mutation p.D3125N 0.20 probably_damaging(0.957) TCGA-66-2744-01 2 155555956 155555956 G T KCNJ3 Missense_Mutation p.M223I 0.47 tolerated(1) probably_damaging(0.996) TCGA-66-2744-01 2 161141535 161141535 G T RBMS1 Nonsense_Mutation p.Y259* 0.45 TCGA-66-2744-01 2 168108054 168108054 G T XIRP2 Silent p.T3384T 0.19 TCGA-66-2744-01 2 169780238 169780238 G T ABCB11 Missense_Mutation p.A1287D 0.14 deleterious(0) probably_damaging(0.952) TCGA-66-2744-01 2 174230295 174230295 G A CDCA7 Missense_Mutation p.R337Q 0.16 tolerated(0.06) benign(0.248) TCGA-66-2744-01 2 179411391 179411391 A T TTN Missense_Mutation p.N31588K 0.22 TCGA-66-2744-01 2 179457260 179457260 G A TTN Silent p.D19824D 0.14 TCGA-66-2744-01 2 197090571 197090571 A T HECW2 Missense_Mutation p.L1314H 0.12 deleterious(0) probably_damaging(0.995) TCGA-66-2744-01 2 210654270 210654270 C A UNC80 Missense_Mutation p.P247T 0.18 probably_damaging(0.994) TCGA-66-2744-01 2 219869012 219869012 C A CCDC108 Missense_Mutation p.E1739D 0.23 tolerated(0.14) possibly_damaging(0.62) TCGA-66-2744-01 2 220309423 220309423 G A SPEG Missense_Mutation p.R146H 0.19 possibly_damaging(0.614) TCGA-66-2744-01 2 227924170 227924170 C A COL4A4 Silent p.V778V 0.17 TCGA-66-2744-01 2 234202917 234202917 C A ATG16L1 Missense_Mutation p.A582E 0.17 deleterious(0) possibly_damaging(0.709) TCGA-66-2744-01 2 234580705 234580705 G T UGT1A9 Missense_Mutation p.R42M 0.30 deleterious(0.02) possibly_damaging(0.759) TCGA-66-2744-01 2 79350303 79350303 G A REG1A Missense_Mutation p.E155K 0.11 tolerated(0.09) possibly_damaging(0.733) TCGA-66-2744-01 3 119462849 119462849 G T MAATS1 Nonsense_Mutation p.G570* 0.16 TCGA-66-2744-01 3 121649761 121649761 A G SLC15A2 Missense_Mutation p.Y543C 0.27 deleterious(0.01) possibly_damaging(0.682) TCGA-66-2744-01 3 12195893 12195893 C A TIMP4 Missense_Mutation p.W137C 0.44 deleterious(0) probably_damaging(1) TCGA-66-2744-01 3 122353965 122353965 C G PARP15 Silent p.L557L 0.36 TCGA-66-2744-01 3 143708453 143708453 A G C3orf58 Missense_Mutation p.T355A 0.14 tolerated(0.59) benign(0.443) TCGA-66-2744-01 3 150916412 150916412 T C GPR171 Missense_Mutation p.I254M 0.24 tolerated(0.22) probably_damaging(0.975) TCGA-66-2744-01 3 157815767 157815767 G A SHOX2 3'UTR 0.18 TCGA-66-2744-01 3 159606697 159606697 A T IQCJ-SCHIP1 Missense_Mutation p.Q504L 0.09 deleterious(0.02) probably_damaging(0.974) TCGA-66-2744-01 3 195295761 195295761 T A APOD 3'UTR 0.11 TCGA-66-2744-01 3 197238877 197238877 G A BDH1 Silent p.T307T 0.15 TCGA-66-2744-01 3 27332856 27332856 T A NEK10 Missense_Mutation p.E501V 0.41 tolerated(0.06) benign(0.328) TCGA-66-2744-01 3 37292888 37292888 G T GOLGA4 Silent p.A25A 0.43 TCGA-66-2744-01 3 50151525 50151525 A G RBM5 Missense_Mutation p.E587G 0.09 deleterious(0) benign(0.272) TCGA-66-2744-01 3 52812955 52812955 C T ITIH1 Intron 0.38 TCGA-66-2744-01 3 55513523 55513523 G T WNT5A Missense_Mutation p.S70R 0.12 deleterious(0.02) benign(0.411) TCGA-66-2744-01 3 58127599 58127599 A C FLNB Missense_Mutation p.E1739D 0.39 tolerated(0.55) benign(0) TCGA-66-2744-01 3 73433190 73433190 T C PDZRN3 Missense_Mutation p.S843G 0.35 tolerated(0.3) benign(0) TCGA-66-2744-01 3 93813893 93813893 C T NSUN3 Missense_Mutation p.P213L 0.25 deleterious(0) probably_damaging(1) TCGA-66-2744-01 3 97887996 97887996 T G OR5H15 Silent p.A151A 0.48 TCGA-66-2744-01 4 113569220 113569220 A G LARP7 Intron 0.34 TCGA-66-2744-01 4 122254088 122254088 C A QRFPR Missense_Mutation p.V229L 0.24 tolerated(0.71) benign(0.019) TCGA-66-2744-01 4 157693940 157693940 G C PDGFC Missense_Mutation p.R201G 0.18 deleterious(0) possibly_damaging(0.785) TCGA-66-2744-01 4 159092200 159092200 T C FAM198B Missense_Mutation p.T110A 0.08 deleterious(0) benign(0.388) TCGA-66-2744-01 4 16189952 16189952 A G TAPT1 Silent p.F213F 0.35 TCGA-66-2744-01 4 175897024 175897024 C A ADAM29 Silent p.L116L 0.16 TCGA-66-2744-01 4 17623209 17623209 G T MED28 Splice_Site p.X76_splice 0.24 TCGA-66-2744-01 4 183676047 183676047 C T TENM3 Silent p.N1509N 0.18 TCGA-66-2744-01 4 46305516 46305516 A G GABRA2 Missense_Mutation p.W273R 0.39 deleterious(0.02) benign(0.443) TCGA-66-2744-01 4 62453133 62453133 G C LPHN3 Missense_Mutation p.D82H 0.42 deleterious(0) probably_damaging(1) TCGA-66-2744-01 4 62845347 62845347 G A LPHN3 Missense_Mutation p.V890I 0.23 tolerated(0.1) benign(0.305) TCGA-66-2744-01 4 89189398 89189398 C A PPM1K Missense_Mutation p.D266Y 0.19 deleterious(0) probably_damaging(1) TCGA-66-2744-01 5 110843086 110843086 T C STARD4 Missense_Mutation p.N16D 0.40 tolerated(0.42) benign(0.005) TCGA-66-2744-01 5 140802848 140802848 C G PCDHGA11 Missense_Mutation p.S685C 0.32 deleterious_low_confidence(0) possibly_damaging(0.726) TCGA-66-2744-01 5 140802857 140802857 C G PCDHGA11 Nonsense_Mutation p.S688* 0.28 TCGA-66-2744-01 5 161580278 161580278 C G GABRG2 Missense_Mutation p.I484M 0.43 deleterious(0) probably_damaging(0.999) TCGA-66-2744-01 5 170380642 170380642 G T RANBP17 Nonsense_Mutation p.G504* 0.33 TCGA-66-2744-01 5 170380643 170380643 G T RANBP17 Missense_Mutation p.G504V 0.33 tolerated(0.1) possibly_damaging(0.454) TCGA-66-2744-01 5 176833016 176833016 G A F12 Silent p.H54H 0.34 TCGA-66-2744-01 5 24593512 24593512 G T CDH10 Missense_Mutation p.P30T 0.37 tolerated(0.28) benign(0) TCGA-66-2744-01 5 26915806 26915806 A C CDH9 Missense_Mutation p.I152S 0.24 deleterious(0) probably_damaging(0.988) TCGA-66-2744-01 5 36137453 36137453 G C LMBRD2 Missense_Mutation p.I153M 0.09 deleterious(0) probably_damaging(0.973) TCGA-66-2744-01 5 37120354 37120354 A C C5orf42 Missense_Mutation p.S3038A 0.17 tolerated(0.62) benign(0.004) TCGA-66-2744-01 5 41142975 41142975 A T C6 Nonsense_Mutation p.C919* 0.14 TCGA-66-2744-01 5 54442562 54442562 C A CDC20B Missense_Mutation p.R83S 0.39 tolerated(0.17) benign(0.169) TCGA-66-2744-01 5 59982955 59982955 C A DEPDC1B Missense_Mutation p.V50L 0.50 deleterious(0.01) benign(0.138) TCGA-66-2744-01 5 61643888 61643888 G A KIF2A Missense_Mutation p.S58N 0.35 tolerated(0.38) possibly_damaging(0.886) TCGA-66-2744-01 5 70798568 70798568 A G BDP1 Missense_Mutation p.I731V 0.38 tolerated(0.55) benign(0.004) TCGA-66-2744-01 5 78181566 78181566 C A ARSB Missense_Mutation p.G328V 0.36 deleterious(0.05) probably_damaging(1) TCGA-66-2744-01 5 86679568 86679570 TGA - RASA1 In_Frame_Del p.L910_N911delinsH 0.38 TCGA-66-2744-01 6 111887689 111887689 G A TRAF3IP2 Silent p.D478D 0.25 TCGA-66-2744-01 6 11566033 11566033 G C TMEM170B Missense_Mutation p.G78R 0.17 deleterious(0) probably_damaging(0.913) TCGA-66-2744-01 6 123698878 123698878 G C TRDN Missense_Mutation p.P410R 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.68) TCGA-66-2744-01 6 132014720 132014720 C A ENPP3 Silent p.I456I 0.07 TCGA-66-2744-01 6 132939037 132939037 C G TAAR2 Missense_Mutation p.R103T 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-66-2744-01 6 133827274 133827274 C G EYA4 Missense_Mutation p.R408G 0.21 deleterious(0.03) possibly_damaging(0.68) TCGA-66-2744-01 6 143094585 143094585 G A HIVEP2 Missense_Mutation p.R431W 0.22 deleterious(0) probably_damaging(0.999) TCGA-66-2744-01 6 144263695 144263695 G T PLAGL1 Silent p.P86P 0.18 TCGA-66-2744-01 6 144808798 144808798 G A UTRN Missense_Mutation p.A1313T 0.12 tolerated(0.26) benign(0.005) TCGA-66-2744-01 6 146256083 146256083 G T SHPRH Missense_Mutation p.P984T 0.39 deleterious(0) probably_damaging(0.999) TCGA-66-2744-01 6 157502211 157502211 G A ARID1B Missense_Mutation p.E1082K 0.17 probably_damaging(0.99) TCGA-66-2744-01 6 160164807 160164807 G A WTAP Missense_Mutation p.E86K 0.14 deleterious(0) probably_damaging(0.919) TCGA-66-2744-01 6 22287628 22287628 G A PRL 3'UTR 0.33 TCGA-66-2744-01 6 25726578 25726578 T C HIST1H2AA Missense_Mutation p.T60A 0.53 tolerated_low_confidence(0.44) benign(0.072) TCGA-66-2744-01 6 29080440 29080440 C A OR2J3 Missense_Mutation p.A258D 0.38 deleterious(0.01) benign(0.361) TCGA-66-2744-01 6 30310025 30310025 G C TRIM39 Missense_Mutation p.D516H 0.35 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-66-2744-01 6 31107683 31107683 C - PSORS1C1 Frame_Shift_Del p.P145Lfs*7 0.29 TCGA-66-2744-01 6 33634988 33634988 A G ITPR3 Missense_Mutation p.K545R 0.30 tolerated(1) benign(0.03) TCGA-66-2744-01 6 38851775 38851775 G T DNAH8 Splice_Site p.X2536_splice 0.24 TCGA-66-2744-01 6 38851776 38851776 T A DNAH8 Splice_Site p.X2536_splice 0.24 TCGA-66-2744-01 6 54805755 54805755 G T FAM83B Missense_Mutation p.R662S 0.11 deleterious(0) probably_damaging(0.999) TCGA-66-2744-01 6 69945025 69945025 G C BAI3 Missense_Mutation p.W903C 0.20 deleterious(0) probably_damaging(0.999) TCGA-66-2744-01 6 76333641 76333641 G A SENP6 Missense_Mutation p.E58K 0.09 deleterious(0.01) benign(0.345) TCGA-66-2744-01 6 90442427 90442427 C G MDN1 Missense_Mutation p.K1597N 0.20 benign(0.103) TCGA-66-2744-01 7 103214585 103214585 C G RELN Missense_Mutation p.G1489R 0.18 deleterious(0) probably_damaging(1) TCGA-66-2744-01 7 110763735 110763735 C T LRRN3 Missense_Mutation p.L303F 0.27 tolerated(1) benign(0.039) TCGA-66-2744-01 7 110763895 110763895 C G LRRN3 Missense_Mutation p.S356C 0.13 deleterious(0.01) probably_damaging(0.962) TCGA-66-2744-01 7 127255120 127255120 T C PAX4 Silent p.L50L 0.15 TCGA-66-2744-01 7 127255306 127255306 C G PAX4 Intron 0.20 TCGA-66-2744-01 7 132070011 132070011 C A PLXNA4 Intron 0.15 TCGA-66-2744-01 7 143748242 143748242 C A OR2A5 Missense_Mutation p.L250I 0.24 deleterious(0.01) probably_damaging(0.973) TCGA-66-2744-01 7 150164145 150164145 T G GIMAP8 Missense_Mutation p.V120G 0.17 deleterious(0) possibly_damaging(0.782) TCGA-66-2744-01 7 150840948 150840948 G T AGAP3 Missense_Mutation p.G885V 0.23 tolerated(0.45) benign(0.004) TCGA-66-2744-01 7 31746859 31746859 G T PPP1R17 Nonsense_Mutation p.E144* 0.28 TCGA-66-2744-01 7 38299746 38299746 G T TRGC1 Silent p.I155I 0.09 TCGA-66-2744-01 7 44073840 44073840 C G RASA4CP RNA 0.16 TCGA-66-2744-01 7 48147012 48147012 C T UPP1 Missense_Mutation p.A234V 0.20 tolerated(0.08) benign(0.001) TCGA-66-2744-01 7 64452179 64452179 T C ERV3-1 Missense_Mutation p.N409S 0.20 tolerated(0.87) benign(0.048) TCGA-66-2744-01 7 66420605 66420605 C T TMEM248 3'UTR 0.18 TCGA-66-2744-01 7 77325946 77325946 C A RSBN1L Silent p.R54R 0.26 TCGA-66-2744-01 7 77756572 77756572 T C MAGI2 Missense_Mutation p.Y1122C 0.20 deleterious(0.01) probably_damaging(0.963) TCGA-66-2744-01 7 83014748 83014748 C A SEMA3E Silent p.G579G 0.58 TCGA-66-2744-01 7 91709280 91709280 A G AKAP9 Silent p.L2611L 0.07 TCGA-66-2744-01 7 92099241 92099241 G C ERVW-1 Nonsense_Mutation p.S152* 0.48 TCGA-66-2744-01 7 94050373 94050373 C A COL1A2 Missense_Mutation p.P783H 0.12 unknown(0) TCGA-66-2744-01 8 100513915 100513915 G C VPS13B Missense_Mutation p.G1291R 0.09 tolerated(0.07) probably_damaging(0.998) TCGA-66-2744-01 8 114111088 114111088 C A CSMD3 Missense_Mutation p.V272L 0.21 tolerated(1) benign(0.014) TCGA-66-2744-01 8 120431549 120431549 G T NOV Silent p.R247R 0.18 TCGA-66-2744-01 8 123964442 123964442 G T ZHX2 Missense_Mutation p.G231V 0.24 deleterious(0.01) possibly_damaging(0.594) TCGA-66-2744-01 8 124705948 124705948 T A ANXA13 Intron 0.16 TCGA-66-2744-01 8 136594138 136594138 C A KHDRBS3 Missense_Mutation p.T210K 0.34 tolerated(0.25) benign(0.109) TCGA-66-2744-01 8 26236913 26236913 C G BNIP3L 5'Flank 0.50 TCGA-66-2744-01 8 30539494 30539494 G A GSR Missense_Mutation p.T413I 0.20 deleterious(0) probably_damaging(0.996) TCGA-66-2744-01 8 39525607 39525607 C G ADAM18 Missense_Mutation p.P473A 0.44 tolerated(0.08) probably_damaging(1) TCGA-66-2744-01 8 43037324 43037324 A T HGSNAT Missense_Mutation p.Q350L 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-66-2744-01 8 51664659 51664659 G C SNTG1 Missense_Mutation p.Q461H 0.12 tolerated(0.13) possibly_damaging(0.738) TCGA-66-2744-01 8 59404141 59404141 T A CYP7A1 Missense_Mutation p.I470L 0.18 tolerated(0.71) benign(0) TCGA-66-2744-01 8 68956719 68956719 A C PREX2 Intron 0.16 TCGA-66-2744-01 8 88885863 88885863 G A DCAF4L2 Missense_Mutation p.R113W 0.28 deleterious(0.01) possibly_damaging(0.462) TCGA-66-2744-01 8 94746211 94746211 C A RBM12B Missense_Mutation p.D810Y 0.15 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-66-2744-01 9 107645435 107645435 C A ABCA1 Silent p.V102V 0.14 TCGA-66-2744-01 9 120476154 120476154 G T TLR4 Missense_Mutation p.C583F 0.34 deleterious(0) probably_damaging(0.999) TCGA-66-2744-01 9 134952931 134952931 C T MED27 Silent p.E82E 0.10 TCGA-66-2744-01 9 139402467 139402467 T - NOTCH1 Frame_Shift_Del p.S1152Afs*27 0.50 TCGA-66-2744-01 9 35079503 35079503 A T FANCG Missense_Mutation p.S7T 0.14 tolerated_low_confidence(0.64) benign(0) TCGA-66-2744-01 9 35720477 35720477 T A TLN1 Missense_Mutation p.E412D 0.41 tolerated(0.44) benign(0.004) TCGA-66-2744-01 9 37126431 37126431 A T ZCCHC7 Missense_Mutation p.Q34H 0.11 tolerated(1) benign(0.055) TCGA-66-2744-01 9 40705844 40705844 C G SPATA31A3 Missense_Mutation p.I1167M 0.28 tolerated(1) probably_damaging(0.965) TCGA-66-2744-01 9 4576030 4576030 C T SLC1A1 Missense_Mutation p.P302L 0.42 deleterious(0.03) possibly_damaging(0.476) TCGA-66-2744-01 9 6550883 6550883 G T GLDC Missense_Mutation p.T830K 0.61 deleterious(0) benign(0.343) TCGA-66-2744-01 9 79968365 79968365 A G VPS13A Missense_Mutation p.Y2487C 0.13 deleterious(0) probably_damaging(0.971) TCGA-66-2744-01 9 8486189 8486189 T C PTPRD Silent p.K876K 0.82 TCGA-66-2744-01 X 104440271 104440271 C A IL1RAPL2 Missense_Mutation p.T66K 0.31 deleterious(0.03) benign(0.258) TCGA-66-2744-01 X 114141492 114141492 G T HTR2C Missense_Mutation p.R297S 0.46 deleterious(0.03) benign(0.224) TCGA-66-2744-01 Y 24460819 24460819 T A RBMY2FP RNA 0.50 TCGA-66-2754-01 10 106022748 106022748 G C GSTO1 Missense_Mutation p.L126F 0.52 tolerated(0.22) benign(0.285) TCGA-66-2754-01 10 108448089 108448089 C T SORCS1 Missense_Mutation p.G474E 0.21 deleterious(0) probably_damaging(0.999) TCGA-66-2754-01 10 118101585 118101585 A T CCDC172 Missense_Mutation p.K107I 0.34 deleterious(0.01) possibly_damaging(0.583) TCGA-66-2754-01 10 134621897 134621897 G A TTC40 3'UTR 0.90 TCGA-66-2754-01 10 25877958 25877958 G A GPR158 Nonsense_Mutation p.W592* 0.30 TCGA-66-2754-01 10 29754670 29754670 C T SVIL Missense_Mutation p.S1996N 0.33 tolerated(0.19) benign(0.002) TCGA-66-2754-01 10 73494018 73494018 C G CDH23 Missense_Mutation p.L1381V 0.40 tolerated(0.21) possibly_damaging(0.833) TCGA-66-2754-01 10 88820739 88820739 C - GLUD1 Frame_Shift_Del p.G331Vfs*49 0.27 TCGA-66-2754-01 11 105948587 105948587 G A AASDHPPT Silent p.Q50Q 0.31 TCGA-66-2754-01 11 107959295 107959295 T A CUL5 Missense_Mutation p.L407Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-66-2754-01 11 1099773 1099773 G A MUC2 Missense_Mutation p.G2457E 0.31 unknown(0) TCGA-66-2754-01 11 114167209 114167209 A G NNMT 5'UTR 0.73 TCGA-66-2754-01 11 117869931 117869931 C T IL10RA Missense_Mutation p.P438S 0.33 tolerated(0.18) benign(0.045) TCGA-66-2754-01 11 118772641 118772641 G C BCL9L Missense_Mutation p.P604R 0.37 possibly_damaging(0.791) TCGA-66-2754-01 11 11977671 11977671 A G USP47 Silent p.A1271A 0.37 TCGA-66-2754-01 11 123810819 123810819 C G OR4D5 Missense_Mutation p.L166V 0.28 deleterious(0.01) possibly_damaging(0.552) TCGA-66-2754-01 11 1263589 1263589 A G MUC5B Missense_Mutation p.S1827G 0.59 unknown(0) TCGA-66-2754-01 11 21596535 21596535 T C NELL1 Silent p.C800C 0.38 TCGA-66-2754-01 11 32955081 32955081 A C QSER1 Missense_Mutation p.K630N 0.26 deleterious(0.03) benign(0.007) TCGA-66-2754-01 11 33565884 33565884 T A KIAA1549L Splice_Site p.X628_splice 0.32 TCGA-66-2754-01 11 36615574 36615574 C G RAG2 Missense_Mutation p.D49H 0.32 tolerated(0.34) possibly_damaging(0.455) TCGA-66-2754-01 11 3691059 3691059 G A CHRNA10 Silent p.T58T 0.23 TCGA-66-2754-01 11 44102744 44102744 G T ACCS Missense_Mutation p.G329W 0.29 deleterious(0) probably_damaging(1) TCGA-66-2754-01 11 4471324 4471324 C G OR52K2 Missense_Mutation p.A252G 0.25 tolerated(0.12) possibly_damaging(0.472) TCGA-66-2754-01 11 48328449 48328449 C T OR4S1 Silent p.S225S 0.67 TCGA-66-2754-01 11 49831655 49831655 C A RP11-707M1.1 RNA 0.31 TCGA-66-2754-01 11 55111277 55111277 G T OR4A16 Missense_Mutation p.G201C 0.17 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-66-2754-01 11 55111278 55111278 G T OR4A16 Missense_Mutation p.G201V 0.18 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-66-2754-01 11 55322667 55322667 T A OR4C15 Silent p.S295S 0.31 TCGA-66-2754-01 11 62259292 62259292 C T AHNAK Silent p.Q118Q 0.21 TCGA-66-2754-01 11 62349016 62349016 G A TUT1 Missense_Mutation p.P182L 0.71 tolerated(0.85) benign(0.008) TCGA-66-2754-01 11 62349017 62349017 G A TUT1 Missense_Mutation p.P182S 0.68 tolerated(0.52) benign(0.022) TCGA-66-2754-01 11 62568576 62568576 G C NXF1 Missense_Mutation p.S299C 0.64 deleterious(0) possibly_damaging(0.656) TCGA-66-2754-01 11 64064613 64064613 C A KCNK4 Silent p.R112R 0.59 TCGA-66-2754-01 11 65000734 65000734 T C SLC22A20 RNA 0.25 TCGA-66-2754-01 11 65784238 65784238 C G CATSPER1 3'UTR 0.36 TCGA-66-2754-01 11 72598570 72598570 C A FCHSD2 Missense_Mutation p.R364L 0.27 tolerated(0.36) benign(0.414) TCGA-66-2754-01 11 7960982 7960982 C A OR10A3 Missense_Mutation p.G29V 0.33 tolerated(0.54) benign(0.027) TCGA-66-2754-01 11 7981729 7981729 G C NLRP10 Missense_Mutation p.S477C 0.32 tolerated(0.06) probably_damaging(0.969) TCGA-66-2754-01 11 85437446 85437446 C T SYTL2 Silent p.L18L 0.23 TCGA-66-2754-01 11 85576208 85576208 C A CCDC83 Missense_Mutation p.D14E 0.24 tolerated(0.17) benign(0.081) TCGA-66-2754-01 11 88780921 88780921 G C GRM5 Silent p.L40L 0.38 TCGA-66-2754-01 11 92087130 92087130 G T FAT3 Nonsense_Mutation p.G618* 0.38 TCGA-66-2754-01 11 93911564 93911564 G A PANX1 Silent p.A117A 0.64 TCGA-66-2754-01 12 121877660 121877660 C T KDM2B Missense_Mutation p.D1277N 0.48 tolerated(0.49) possibly_damaging(0.675) TCGA-66-2754-01 12 129566492 129566492 C G TMEM132D Missense_Mutation p.V579L 0.14 deleterious(0) probably_damaging(0.976) TCGA-66-2754-01 12 129822210 129822210 T C TMEM132D Missense_Mutation p.K423R 0.20 tolerated(0.33) benign(0.007) TCGA-66-2754-01 12 29709822 29709822 G T TMTC1 Missense_Mutation p.N548K 0.29 tolerated(0.4) benign(0.068) TCGA-66-2754-01 12 40153730 40153730 T C SLC2A13 3'UTR 0.77 TCGA-66-2754-01 12 43822241 43822241 C T ADAMTS20 Missense_Mutation p.V1250I 0.14 tolerated(0.46) benign(0.019) TCGA-66-2754-01 12 49724003 49724003 G A TROAP Missense_Mutation p.G459R 0.24 deleterious(0) probably_damaging(0.978) TCGA-66-2754-01 12 56119959 56119959 A G CD63 Silent p.I171I 0.38 TCGA-66-2754-01 12 58000741 58000741 A T DTX3 Missense_Mutation p.E32V 0.43 tolerated(0.07) benign(0.336) TCGA-66-2754-01 12 58135886 58135886 C T AGAP2 5'Flank 0.42 TCGA-66-2754-01 12 6619410 6619410 G A NCAPD2 Intron 0.27 TCGA-66-2754-01 12 7025668 7025668 T C ENO2 Missense_Mutation p.L58S 0.33 tolerated_low_confidence(0.19) possibly_damaging(0.526) TCGA-66-2754-01 12 72666957 72666957 G C TRHDE Missense_Mutation p.W133C 0.25 tolerated(0.07) benign(0.112) TCGA-66-2754-01 12 81472035 81472035 C T ACSS3 Missense_Mutation p.L46F 0.55 tolerated_low_confidence(0.12) benign(0.002) TCGA-66-2754-01 12 9007400 9007400 A T A2ML1 Missense_Mutation p.T913S 0.27 tolerated(0.75) benign(0.034) TCGA-66-2754-01 12 9083501 9083501 C G PHC1 Silent p.P361P 0.29 TCGA-66-2754-01 12 9227227 9227227 T A A2M Missense_Mutation p.T1229S 0.23 tolerated(0.74) benign(0.034) TCGA-66-2754-01 12 9309771 9309771 C G PZP Missense_Mutation p.D1184H 0.42 deleterious(0.01) possibly_damaging(0.905) TCGA-66-2754-01 12 95907481 95907481 T C METAP2 Missense_Mutation p.L413P 0.23 deleterious(0.01) probably_damaging(1) TCGA-66-2754-01 12 96386512 96386512 C G HAL Missense_Mutation p.G221R 0.39 deleterious(0) probably_damaging(1) TCGA-66-2754-01 13 102375117 102375117 T C FGF14 3'UTR 0.41 TCGA-66-2754-01 13 103703676 103703676 G T SLC10A2 Missense_Mutation p.T231K 0.89 tolerated(0.07) benign(0.187) TCGA-66-2754-01 13 49030452 49030452 A T RB1 Nonsense_Mutation p.K643* 0.65 TCGA-66-2754-01 13 61083927 61083927 G T TDRD3 Nonsense_Mutation p.E297* 0.76 TCGA-66-2754-01 13 96513122 96513122 C T UGGT2 Silent p.L1220L 0.40 TCGA-66-2754-01 14 103574849 103574849 C T EXOC3L4 Silent p.D657D 0.39 TCGA-66-2754-01 14 105406088 105406088 C T AHNAK2 Missense_Mutation p.E5234K 0.08 benign(0.067) TCGA-66-2754-01 14 105410247 105410247 C G AHNAK2 Missense_Mutation p.K3847N 0.04 probably_damaging(0.973) TCGA-66-2754-01 14 20612464 20612464 C A OR4N5 Silent p.T190T 0.36 TCGA-66-2754-01 14 25042980 25042980 C T CTSG Missense_Mutation p.A211T 0.38 deleterious(0) probably_damaging(0.977) TCGA-66-2754-01 14 47120763 47120763 C A RPL10L Missense_Mutation p.Q59H 0.45 deleterious(0.04) possibly_damaging(0.836) TCGA-66-2754-01 14 60213061 60213061 A G RTN1 Missense_Mutation p.L127P 0.39 deleterious(0) probably_damaging(0.976) TCGA-66-2754-01 14 60213190 60213190 C T RTN1 Missense_Mutation p.G84D 0.44 tolerated_low_confidence(1) benign(0.002) TCGA-66-2754-01 14 63416964 63416964 T C KCNH5 Missense_Mutation p.Y419C 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-66-2754-01 14 68292250 68292250 C G RAD51B Missense_Mutation p.L52V 0.40 tolerated(0.1) benign(0.348) TCGA-66-2754-01 14 73659572 73659572 G A PSEN1 Missense_Mutation p.D257N 0.34 deleterious(0) probably_damaging(1) TCGA-66-2754-01 14 89087225 89087225 A G EML5 Missense_Mutation p.C1750R 0.43 tolerated(0.15) benign(0.24) TCGA-66-2754-01 14 94752583 94752583 A G SERPINA10 Silent p.V335V 0.35 TCGA-66-2754-01 14 95030166 95030166 A C SERPINA4 Missense_Mutation p.D116A 0.24 deleterious(0.04) possibly_damaging(0.777) TCGA-66-2754-01 15 101872090 101872090 C T PCSK6 Missense_Mutation p.V668M 0.22 tolerated(0.2) benign(0.016) TCGA-66-2754-01 15 22709680 22709680 T A AC116165.1 5'Flank 0.19 TCGA-66-2754-01 15 30024886 30024886 G A TJP1 Nonsense_Mutation p.Q624* 0.80 TCGA-66-2754-01 15 41145767 41145767 C A SPINT1 Missense_Mutation p.D228E 0.45 tolerated(1) benign(0.005) TCGA-66-2754-01 15 43769871 43769871 C A TP53BP1 Missense_Mutation p.S292I 0.49 deleterious(0.01) benign(0.377) TCGA-66-2754-01 15 74704328 74704328 C T SEMA7A Silent p.V440V 0.18 TCGA-66-2754-01 15 75656914 75656914 T A MAN2C1 Missense_Mutation p.Q172L 0.46 tolerated(0.13) benign(0.039) TCGA-66-2754-01 15 76205551 76205551 G A FBXO22 Missense_Mutation p.R96H 0.27 tolerated(0.78) benign(0) TCGA-66-2754-01 15 79606172 79606172 C T TMED3 Missense_Mutation p.T81M 0.26 tolerated(0.57) benign(0.111) TCGA-66-2754-01 15 86198831 86198831 G A AKAP13 Missense_Mutation p.G1520S 0.09 tolerated(0.17) benign(0.199) TCGA-66-2754-01 16 19867933 19867933 A T IQCK 3'UTR 0.28 TCGA-66-2754-01 16 20565107 20565107 C T ACSM2B Missense_Mutation p.M244I 0.31 tolerated(0.69) benign(0.001) TCGA-66-2754-01 16 30735282 30735282 C A SRCAP Missense_Mutation p.P1513T 0.26 possibly_damaging(0.641) TCGA-66-2754-01 16 30990990 30990990 C T SETD1A Missense_Mutation p.H1295Y 0.33 unknown(0) TCGA-66-2754-01 16 31382733 31382733 G A ITGAX Silent p.R640R 0.16 TCGA-66-2754-01 16 48594834 48594834 C A N4BP1 Missense_Mutation p.V574F 0.60 tolerated(0.7) benign(0.003) TCGA-66-2754-01 16 56368665 56368666 - G GNAO1 Frame_Shift_Ins p.A165Gfs*37 0.26 TCGA-66-2754-01 16 67293564 67293564 T G SLC9A5 Missense_Mutation p.L572R 0.23 tolerated(0.11) benign(0.022) TCGA-66-2754-01 16 67709916 67709916 C A GFOD2 Silent p.S100S 0.27 TCGA-66-2754-01 16 75678327 75678327 G A KARS 5'UTR 0.17 TCGA-66-2754-01 16 83251007 83251007 G A CDH13 Missense_Mutation p.D228N 0.16 deleterious(0) benign(0.411) TCGA-66-2754-01 16 84256194 84256194 C T KCNG4 Missense_Mutation p.G397R 0.13 deleterious(0) probably_damaging(1) TCGA-66-2754-01 17 33326404 33326404 G A LIG3 Missense_Mutation p.G731E 0.22 deleterious(0.02) possibly_damaging(0.9) TCGA-66-2754-01 17 34893620 34893620 G T PIGW Missense_Mutation p.G224C 0.24 deleterious(0.01) possibly_damaging(0.765) TCGA-66-2754-01 17 38340578 38340578 G A RAPGEFL1 Missense_Mutation p.E32K 0.33 tolerated(0.1) probably_damaging(0.931) TCGA-66-2754-01 17 38573130 38573130 C T TOP2A Missense_Mutation p.M13I 0.64 tolerated(0.23) benign(0.002) TCGA-66-2754-01 17 40635067 40635067 C T ATP6V0A1 Missense_Mutation p.S250L 0.23 deleterious(0.02) possibly_damaging(0.794) TCGA-66-2754-01 17 40673107 40673107 A G ATP6V0A1 Missense_Mutation p.E829G 0.57 deleterious(0.05) possibly_damaging(0.582) TCGA-66-2754-01 17 40990190 40990190 G A PSME3 Missense_Mutation p.E125K 0.28 tolerated(0.36) possibly_damaging(0.583) TCGA-66-2754-01 17 41108544 41108544 C T AARSD1 Silent p.L141L 0.24 TCGA-66-2754-01 17 4675353 4675353 C G TM4SF5 Missense_Mutation p.Q46E 0.45 tolerated(0.67) benign(0.088) TCGA-66-2754-01 17 46799684 46799684 T C PRAC1 Missense_Mutation p.N24S 0.34 tolerated_low_confidence(0.08) possibly_damaging(0.486) TCGA-66-2754-01 17 47022121 47022121 C T SNF8 5'UTR 0.36 TCGA-66-2754-01 17 4836260 4836260 C A GP1BA Missense_Mutation p.L121M 0.49 deleterious(0) probably_damaging(0.996) TCGA-66-2754-01 17 56082957 56082958 TC - SRSF1 Frame_Shift_Del p.E186Nfs*7 0.32 TCGA-66-2754-01 17 56661932 56661932 C T TEX14 Missense_Mutation p.E1040K 0.33 tolerated(0.09) benign(0.021) TCGA-66-2754-01 17 68171453 68171453 T G KCNJ2 Silent p.A91A 0.18 TCGA-66-2754-01 17 68171795 68171795 C G KCNJ2 Missense_Mutation p.D205E 0.24 deleterious(0) probably_damaging(0.995) TCGA-66-2754-01 17 72832865 72832865 G T TMEM104 3'UTR 0.32 TCGA-66-2754-01 17 73487781 73487781 C A KIAA0195 Silent p.R466R 0.18 TCGA-66-2754-01 17 74712694 74712694 A C JMJD6 3'UTR 0.34 TCGA-66-2754-01 17 7576853 7576853 C G TP53 Missense_Mutation p.Q331H 0.90 tolerated(0.13) benign(0.052) TCGA-66-2754-01 17 79207224 79207224 C T ENTHD2 Intron 0.14 TCGA-66-2754-01 17 79511036 79511036 G A C17orf70 Silent p.R807R 0.12 TCGA-66-2754-01 17 80320050 80320050 G A TEX19 Silent p.R8R 0.69 TCGA-66-2754-01 17 9674965 9674965 T A DHRS7C Missense_Mutation p.E260V 0.93 tolerated(0.06) benign(0.269) TCGA-66-2754-01 18 11864603 11864603 C G GNAL Missense_Mutation p.F283L 0.29 deleterious(0.04) benign(0.147) TCGA-66-2754-01 18 215489 215489 T C THOC1 Missense_Mutation p.I540V 0.79 tolerated(0.41) benign(0.02) TCGA-66-2754-01 18 2688397 2688397 A T SMCHD1 Missense_Mutation p.H215L 0.52 tolerated(0.23) possibly_damaging(0.685) TCGA-66-2754-01 18 2747616 2747616 A G SMCHD1 Missense_Mutation p.I1300V 0.15 tolerated(0.73) benign(0.376) TCGA-66-2754-01 18 40850148 40850148 G C SYT4 3'UTR 0.21 TCGA-66-2754-01 18 56009014 56009014 A G NEDD4L Silent p.L454L 0.56 TCGA-66-2754-01 18 59217223 59217223 G A CDH20 Missense_Mutation p.R554Q 0.27 tolerated(0.32) possibly_damaging(0.667) TCGA-66-2754-01 18 8783967 8783967 A C SOGA2 Missense_Mutation p.E286A 0.59 deleterious(0.01) benign(0.149) TCGA-66-2754-01 19 10599944 10599944 C A KEAP1 Missense_Mutation p.W544C 0.89 deleterious(0) probably_damaging(1) TCGA-66-2754-01 19 1221314 1221314 C - STK11 Frame_Shift_Del p.P281Rfs*6 0.82 TCGA-66-2754-01 19 14991871 14991871 G T OR7A17 Silent p.T99T 0.68 TCGA-66-2754-01 19 17017851 17017851 C A CPAMD8 Missense_Mutation p.C1360F 1.00 tolerated(0.12) benign(0.098) TCGA-66-2754-01 19 18180373 18180373 G - IL12RB1 Frame_Shift_Del p.P391Rfs*64 0.93 TCGA-66-2754-01 19 22575389 22575389 C - ZNF98 Frame_Shift_Del p.A218Pfs*41 0.45 TCGA-66-2754-01 19 2422218 2422218 G T TMPRSS9 Nonsense_Mutation p.E807* 0.21 TCGA-66-2754-01 19 45321844 45321844 G A BCAM Missense_Mutation p.V382M 0.86 deleterious(0.01) probably_damaging(0.921) TCGA-66-2754-01 19 46998324 46998324 C T PNMAL2 Silent p.S133S 0.44 TCGA-66-2754-01 19 48221846 48221846 A T EHD2 Missense_Mutation p.K162M 1.00 deleterious(0) probably_damaging(0.982) TCGA-66-2754-01 19 49845759 49845759 T G TEAD2 Missense_Mutation p.K393T 0.68 deleterious(0.02) possibly_damaging(0.678) TCGA-66-2754-01 19 52327627 52327627 G C FPR3 Missense_Mutation p.G209A 0.84 deleterious(0.04) probably_damaging(0.954) TCGA-66-2754-01 19 53384241 53384241 T G ZNF320 Missense_Mutation p.T380P 0.42 deleterious(0.02) probably_damaging(0.996) TCGA-66-2754-01 19 54818729 54818729 T C LILRA5 Missense_Mutation p.Q290R 0.33 deleterious(0.04) benign(0.013) TCGA-66-2754-01 19 55144596 55144596 C A LILRB1 Missense_Mutation p.A363D 0.44 deleterious(0.01) benign(0.259) TCGA-66-2754-01 19 58087182 58087182 T A ZNF416 Silent p.I64I 0.63 TCGA-66-2754-01 19 58850392 58850392 C G ZSCAN22 Missense_Mutation p.S392R 0.51 deleterious(0.05) benign(0.016) TCGA-66-2754-01 19 9058439 9058439 A C MUC16 Silent p.S9669S 0.51 TCGA-66-2754-01 1 102270309 102270309 G A OLFM3 Nonsense_Mutation p.Q288* 0.58 TCGA-66-2754-01 1 12920019 12920019 A T PRAMEF2 Silent p.G253G 0.25 TCGA-66-2754-01 1 144921868 144921868 T C PDE4DIP Silent p.E387E 0.12 TCGA-66-2754-01 1 149916189 149916189 C T OTUD7B Missense_Mutation p.R700Q 0.51 tolerated_low_confidence(0.06) possibly_damaging(0.772) TCGA-66-2754-01 1 151508751 151508751 A T CGN Missense_Mutation p.E1079V 0.25 deleterious(0) probably_damaging(1) TCGA-66-2754-01 1 152127876 152127876 G T RPTN Missense_Mutation p.Q567K 0.20 tolerated(0.05) benign(0.066) TCGA-66-2754-01 1 152538351 152538351 C A LCE3E 3'UTR 0.19 TCGA-66-2754-01 1 152777718 152777718 G T LCE1C Missense_Mutation p.H79Q 0.52 deleterious_low_confidence(0) unknown(0) TCGA-66-2754-01 1 154026870 154026870 C G NUP210L Missense_Mutation p.G1106A 0.36 deleterious(0.01) probably_damaging(1) TCGA-66-2754-01 1 15773101 15773101 G A CTRC 3'UTR 0.45 TCGA-66-2754-01 1 158736433 158736433 T C OR6N1 Missense_Mutation p.I14V 0.44 deleterious(0.02) benign(0.137) TCGA-66-2754-01 1 160011200 160011200 G T KCNJ10 Missense_Mutation p.R375S 0.64 deleterious(0) benign(0.05) TCGA-66-2754-01 1 165177303 165177303 A C LMX1A Missense_Mutation p.S272A 0.29 tolerated(0.22) benign(0.065) TCGA-66-2754-01 1 170689004 170689004 C G PRRX1 Missense_Mutation p.L127V 0.22 deleterious(0.05) probably_damaging(0.987) TCGA-66-2754-01 1 171310617 171310617 C T FMO4 Missense_Mutation p.A439V 0.26 tolerated(0.08) benign(0.111) TCGA-66-2754-01 1 175958605 175958605 G C RFWD2 Silent p.V580V 0.24 TCGA-66-2754-01 1 176833270 176833270 A T ASTN1 3'UTR 0.25 TCGA-66-2754-01 1 183532587 183532587 A C NCF2 Missense_Mutation p.L387R 0.29 tolerated(0.06) benign(0.007) TCGA-66-2754-01 1 190250825 190250825 C A BRINP3 Missense_Mutation p.G98C 0.23 deleterious(0.03) possibly_damaging(0.819) TCGA-66-2754-01 1 201458112 201458112 T A CSRP1 Missense_Mutation p.E94D 0.19 tolerated(0.35) benign(0) TCGA-66-2754-01 1 207013247 207013247 G C IL19 Missense_Mutation p.R126T 0.33 tolerated(0.08) possibly_damaging(0.893) TCGA-66-2754-01 1 210024662 210024662 C T DIEXF Missense_Mutation p.T714M 0.24 deleterious(0.01) benign(0.276) TCGA-66-2754-01 1 237948022 237948022 C A RYR2 Missense_Mutation p.P4337H 0.29 probably_damaging(1) TCGA-66-2754-01 1 240370853 240370853 C T FMN2 Missense_Mutation p.P914L 0.31 unknown(0) TCGA-66-2754-01 1 247587725 247587725 G C NLRP3 Missense_Mutation p.R327P 0.32 tolerated(1) benign(0.075) TCGA-66-2754-01 1 247978715 247978715 G A OR14A16 Missense_Mutation p.A106V 0.32 tolerated(0.2) possibly_damaging(0.87) TCGA-66-2754-01 1 42045717 42045717 T G HIVEP3 Missense_Mutation p.Q1584H 0.59 probably_damaging(0.944) TCGA-66-2754-01 1 43218306 43218306 G A LEPRE1 Missense_Mutation p.L459F 0.38 tolerated(0.2) possibly_damaging(0.726) TCGA-66-2754-01 1 45469399 45469399 C T HECTD3 Missense_Mutation p.D815N 0.22 tolerated(0.07) possibly_damaging(0.678) TCGA-66-2754-01 1 47653062 47653062 G A PDZK1IP1 Silent p.I35I 0.28 TCGA-66-2754-01 1 52442657 52442657 C T RAB3B Missense_Mutation p.D45N 0.28 tolerated(0.05) possibly_damaging(0.557) TCGA-66-2754-01 1 63270862 63270862 G C ATG4C Missense_Mutation p.K32N 0.19 deleterious(0) probably_damaging(0.999) TCGA-66-2754-01 20 1161744 1161744 C T TMEM74B Silent p.L173L 0.33 TCGA-66-2754-01 20 20079442 20079442 T A C20orf26 Missense_Mutation p.S281R 0.39 tolerated(0.07) benign(0.024) TCGA-66-2754-01 20 2779185 2779185 T A CPXM1 Splice_Site p.X114_splice 0.34 TCGA-66-2754-01 20 34285673 34285673 C T NFS1 Missense_Mutation p.G86E 0.22 deleterious(0) probably_damaging(1) TCGA-66-2754-01 20 35177601 35177601 C T MYL9 Silent p.Y156Y 0.31 TCGA-66-2754-01 20 37657130 37657130 C G DHX35 Missense_Mutation p.T624S 0.30 tolerated(0.65) benign(0.011) TCGA-66-2754-01 20 39802790 39802790 C T PLCG1 Silent p.F1224F 0.56 TCGA-66-2754-01 20 56185336 56185336 C T ZBP1 Missense_Mutation p.R321K 0.58 tolerated(0.24) possibly_damaging(0.745) TCGA-66-2754-01 20 57415527 57415527 G C RP4-806M20.3 5'Flank 0.25 TCGA-66-2754-01 20 8713943 8713943 A T PLCB1 Missense_Mutation p.R649S 0.41 deleterious(0) possibly_damaging(0.877) TCGA-66-2754-01 21 39795353 39795353 G A ERG Missense_Mutation p.R130C 0.32 deleterious(0) probably_damaging(0.994) TCGA-66-2754-01 21 41551009 41551009 G C DSCAM Missense_Mutation p.S931C 0.88 tolerated(0.08) benign(0.039) TCGA-66-2754-01 21 42609440 42609440 G T BACE2 Missense_Mutation p.R134S 0.90 tolerated(0.74) benign(0.007) TCGA-66-2754-01 21 45846609 45846609 C A TRPM2 Missense_Mutation p.P1288T 0.12 deleterious(0.05) benign(0.259) TCGA-66-2754-01 21 47422159 47422159 G C COL6A1 Silent p.A698A 0.30 TCGA-66-2754-01 22 23055659 23055659 G C IGLV3-21 Missense_Mutation p.V108L 0.54 tolerated(0.12) benign(0.012) TCGA-66-2754-01 22 26830257 26830257 G T ASPHD2 Missense_Mutation p.G226W 0.23 deleterious(0) probably_damaging(1) TCGA-66-2754-01 22 32487724 32487724 G T SLC5A1 Nonsense_Mutation p.E419* 0.54 TCGA-66-2754-01 22 45689169 45689169 G T UPK3A Missense_Mutation p.A227S 0.48 tolerated(0.29) possibly_damaging(0.487) TCGA-66-2754-01 22 46785336 46785336 T A CELSR1 Missense_Mutation p.R2136W 0.19 deleterious(0.01) probably_damaging(0.977) TCGA-66-2754-01 2 10101464 10101464 C G GRHL1 Missense_Mutation p.L190V 0.27 tolerated(0.43) benign(0.025) TCGA-66-2754-01 2 110886762 110886762 C T NPHP1 Splice_Site p.X628_splice 0.47 TCGA-66-2754-01 2 112786239 112786239 G C MERTK Missense_Mutation p.G933A 0.30 tolerated(0.48) benign(0.025) TCGA-66-2754-01 2 118582248 118582248 T A DDX18 Missense_Mutation p.D390E 0.25 tolerated(0.27) benign(0.074) TCGA-66-2754-01 2 120438416 120438416 C T TMEM177 5'UTR 0.50 TCGA-66-2754-01 2 125261958 125261958 C A CNTNAP5 Silent p.T383T 0.27 TCGA-66-2754-01 2 160304825 160304825 C A BAZ2B Missense_Mutation p.A144S 0.24 benign(0.364) TCGA-66-2754-01 2 163200705 163200705 C G GCA 5'UTR 0.25 TCGA-66-2754-01 2 166231463 166231463 C T SCN2A Missense_Mutation p.S1414F 0.24 deleterious(0) possibly_damaging(0.694) TCGA-66-2754-01 2 170493060 170493060 C G PPIG Missense_Mutation p.S431C 0.17 deleterious(0) unknown(0) TCGA-66-2754-01 2 176973689 176973689 G A HOXD11 Missense_Mutation p.R279H 0.32 deleterious(0) probably_damaging(1) TCGA-66-2754-01 2 179236961 179236961 G T OSBPL6 Splice_Site p.X490_splice 0.58 TCGA-66-2754-01 2 179437048 179437048 G T TTN Missense_Mutation p.P24604H 0.27 TCGA-66-2754-01 2 179650444 179650444 G A TTN Missense_Mutation p.T799M 0.29 TCGA-66-2754-01 2 189927941 189927941 C T COL5A2 Missense_Mutation p.G609E 0.27 probably_damaging(1) TCGA-66-2754-01 2 201501692 201501692 G A AOX1 Missense_Mutation p.R802H 0.34 deleterious(0.01) probably_damaging(0.992) TCGA-66-2754-01 2 203820411 203820411 C T CARF Missense_Mutation p.P191L 0.24 deleterious_low_confidence(0.03) benign(0.076) TCGA-66-2754-01 2 220037441 220037441 C A CNPPD1 Missense_Mutation p.W367L 0.21 tolerated_low_confidence(0.71) benign(0.002) TCGA-66-2754-01 2 220077986 220077986 G A ABCB6 Silent p.N594N 0.26 TCGA-66-2754-01 2 220161200 220161200 C T PTPRN Silent p.T783T 0.30 TCGA-66-2754-01 2 233899524 233899524 C A NEU2 Missense_Mutation p.H300Q 0.23 tolerated(0.07) benign(0.175) TCGA-66-2754-01 2 238289580 238289580 C T COL6A3 Silent p.R625R 0.24 TCGA-66-2754-01 2 241631490 241631490 G C AQP12A Splice_Site p.X42_splice 0.29 TCGA-66-2754-01 2 32692709 32692709 G C BIRC6 Missense_Mutation p.E1825Q 0.20 probably_damaging(0.986) TCGA-66-2754-01 2 39552894 39552894 G T MAP4K3 Missense_Mutation p.P262T 0.20 deleterious(0) probably_damaging(0.998) TCGA-66-2754-01 2 40656873 40656873 A G SLC8A1 Missense_Mutation p.I183T 0.27 tolerated(0.05) possibly_damaging(0.669) TCGA-66-2754-01 2 64109731 64109731 G A UGP2 Silent p.L129L 0.31 TCGA-66-2754-01 2 73717648 73717648 A G ALMS1 Silent p.L2853L 0.47 TCGA-66-2754-01 2 74041054 74041054 C A C2orf78 Missense_Mutation p.A183D 0.27 deleterious(0) probably_damaging(0.954) TCGA-66-2754-01 2 87214041 87214041 C G RGPD1 Missense_Mutation p.S1332C 0.32 tolerated(0.07) possibly_damaging(0.461) TCGA-66-2754-01 2 96952118 96952118 G C SNRNP200 Missense_Mutation p.L1312V 0.27 deleterious(0.04) benign(0.2) TCGA-66-2754-01 3 100557066 100557066 G A ABI3BP Intron 0.83 TCGA-66-2754-01 3 113003181 113003182 - AC BOC Frame_Shift_Ins p.K885Nfs*53 0.13 TCGA-66-2754-01 3 122288791 122288791 G A DTX3L Missense_Mutation p.V619I 0.30 tolerated(0.32) benign(0.001) TCGA-66-2754-01 3 122437429 122437429 G C PARP14 Missense_Mutation p.E1477D 0.59 tolerated(0.65) benign(0.071) TCGA-66-2754-01 3 139086994 139086994 G A COPB2 Missense_Mutation p.A513V 0.33 deleterious(0) probably_damaging(0.986) TCGA-66-2754-01 3 140251226 140251226 T C CLSTN2 Missense_Mutation p.Y469H 0.89 deleterious(0) possibly_damaging(0.872) TCGA-66-2754-01 3 148789184 148789184 C T HLTF Nonsense_Mutation p.W250* 0.36 TCGA-66-2754-01 3 179399768 179399768 C T USP13 Missense_Mutation p.H91Y 0.53 deleterious(0) benign(0.188) TCGA-66-2754-01 3 195800873 195800873 C T TFRC Missense_Mutation p.R121H 0.63 tolerated(0.57) benign(0.001) TCGA-66-2754-01 3 44488029 44488029 C A ZNF445 3'UTR 0.89 TCGA-66-2754-01 3 48670977 48670977 C A SLC26A6 Nonsense_Mutation p.E39* 0.33 TCGA-66-2754-01 3 52430701 52430701 A C DNAH1 Missense_Mutation p.K3833T 0.53 probably_damaging(1) TCGA-66-2754-01 3 52623085 52623085 C G PBRM1 Splice_Site p.X989_splice 0.39 TCGA-66-2754-01 3 53842704 53842704 G A CACNA1D Silent p.E1946E 0.77 TCGA-66-2754-01 3 57657985 57657985 G A DENND6A Missense_Mutation p.S106L 0.58 deleterious(0) benign(0.41) TCGA-66-2754-01 3 97356918 97356920 ACA - EPHA6 In_Frame_Del p.T928del 0.40 TCGA-66-2754-01 4 122079902 122079902 C A TNIP3 Silent p.L128L 0.69 TCGA-66-2754-01 4 146058557 146058557 T - OTUD4 3'UTR 0.46 TCGA-66-2754-01 4 187118688 187118688 A T CYP4V2 Missense_Mutation p.E202D 0.34 deleterious(0.05) possibly_damaging(0.791) TCGA-66-2754-01 4 187539652 187539652 C T FAT1 Silent p.P2696P 0.37 TCGA-66-2754-01 4 36115803 36115803 T C ARAP2 Missense_Mutation p.N1382S 0.49 deleterious(0) probably_damaging(0.968) TCGA-66-2754-01 4 42145670 42145670 C T BEND4 Missense_Mutation p.A277T 0.46 tolerated_low_confidence(0.14) possibly_damaging(0.588) TCGA-66-2754-01 4 46930488 46930488 A G GABRA4 Silent p.A473A 0.37 TCGA-66-2754-01 4 70513401 70513401 C A UGT2A1 5'UTR 0.55 TCGA-66-2754-01 4 74321007 74321007 G C AFP Intron 0.31 TCGA-66-2754-01 4 89363429 89363429 G C HERC6 Missense_Mutation p.Q962H 0.55 deleterious(0.01) possibly_damaging(0.878) TCGA-66-2754-01 5 121487975 121487975 G T ZNF474 Missense_Mutation p.C97F 0.31 deleterious(0) probably_damaging(1) TCGA-66-2754-01 5 1221346 1221346 T C SLC6A19 Missense_Mutation p.L540P 0.19 deleterious(0) probably_damaging(0.969) TCGA-66-2754-01 5 137906809 137906809 C A HSPA9 Missense_Mutation p.A84S 0.35 tolerated_low_confidence(0.3) benign(0.016) TCGA-66-2754-01 5 13862706 13862706 C T DNAH5 Missense_Mutation p.A1583T 0.13 possibly_damaging(0.798) TCGA-66-2754-01 5 139494223 139494223 C T PURA Missense_Mutation p.R153C 0.21 deleterious(0) probably_damaging(0.997) TCGA-66-2754-01 5 140242781 140242781 G A AC005609.1 Silent p.S65S 0.38 TCGA-66-2754-01 5 140476621 140476621 G T PCDHB2 Missense_Mutation p.Q749H 0.23 tolerated_low_confidence(0.48) benign(0.011) TCGA-66-2754-01 5 148207577 148207577 C G ADRB2 Missense_Mutation p.P395A 0.29 tolerated_low_confidence(0.53) benign(0.013) TCGA-66-2754-01 5 149676856 149676856 C T ARSI Missense_Mutation p.R544H 0.63 tolerated_low_confidence(0.06) benign(0.132) TCGA-66-2754-01 5 158621750 158621750 G A RNF145 Silent p.L119L 0.28 TCGA-66-2754-01 5 171488197 171488197 C T STK10 Missense_Mutation p.E720K 0.41 tolerated(0.3) probably_damaging(0.976) TCGA-66-2754-01 5 174869482 174869482 C A DRD1 Silent p.V207V 0.86 TCGA-66-2754-01 5 21752268 21752268 C A CDH12 Missense_Mutation p.D655Y 0.46 deleterious(0) probably_damaging(0.999) TCGA-66-2754-01 5 23521148 23521148 C A PRDM9 Nonsense_Mutation p.S123* 0.36 TCGA-66-2754-01 5 33624402 33624402 C G ADAMTS12 Missense_Mutation p.V693L 0.21 deleterious(0) possibly_damaging(0.881) TCGA-66-2754-01 5 3599450 3599450 C A IRX1 Silent p.R130R 0.47 TCGA-66-2754-01 5 60062459 60062459 T A ELOVL7 Splice_Site p.X113_splice 0.96 TCGA-66-2754-01 5 66461703 66461703 C T MAST4 Silent p.L2232L 0.38 TCGA-66-2754-01 5 76640754 76640754 C T PDE8B Nonsense_Mutation p.Q292* 0.47 TCGA-66-2754-01 5 7707871 7707871 G C ADCY2 Missense_Mutation p.V441L 0.21 deleterious(0.01) benign(0.229) TCGA-66-2754-01 5 7869228 7869228 T C MTRR 5'UTR 0.44 TCGA-66-2754-01 6 107035607 107035607 T A RTN4IP1 Missense_Mutation p.I313L 0.54 tolerated(0.92) benign(0.013) TCGA-66-2754-01 6 118635213 118635213 C G SLC35F1 Missense_Mutation p.S342C 0.33 deleterious(0) possibly_damaging(0.706) TCGA-66-2754-01 6 13802567 13802567 G A MCUR1 Nonsense_Mutation p.Q183* 0.19 TCGA-66-2754-01 6 157527589 157527589 G A ARID1B Missense_Mutation p.A1772T 0.28 benign(0.016) TCGA-66-2754-01 6 158357063 158357063 G T SNX9 Silent p.V478V 0.21 TCGA-66-2754-01 6 159414882 159414882 T A RSPH3 Missense_Mutation p.T207S 0.67 tolerated(0.13) benign(0.117) TCGA-66-2754-01 6 160211722 160211722 G T MRPL18 Intron 0.43 TCGA-66-2754-01 6 1611183 1611183 T A FOXC1 Missense_Mutation p.L168Q 0.64 deleterious(0) probably_damaging(0.999) TCGA-66-2754-01 6 161990421 161990421 T C PARK2 Missense_Mutation p.E300G 0.37 deleterious(0.04) probably_damaging(0.998) TCGA-66-2754-01 6 24847798 24847798 G C FAM65B Missense_Mutation p.P400R 0.21 tolerated(0.22) benign(0.104) TCGA-66-2754-01 6 28543271 28543271 G T SCAND3 Missense_Mutation p.T404N 0.18 deleterious_low_confidence(0.03) benign(0.002) TCGA-66-2754-01 6 28963923 28963923 T C ZNF311 Missense_Mutation p.T286A 0.16 tolerated(0.42) possibly_damaging(0.681) TCGA-66-2754-01 6 30459173 30459173 C T HLA-E Silent p.P290P 0.16 TCGA-66-2754-01 6 36976741 36976741 C G FGD2 Missense_Mutation p.T67R 0.18 deleterious(0.05) benign(0.265) TCGA-66-2754-01 6 42603239 42603239 A G UBR2 Silent p.K543K 0.16 TCGA-66-2754-01 6 42981026 42981026 C G MEA1 Missense_Mutation p.E44Q 0.30 deleterious(0.02) possibly_damaging(0.864) TCGA-66-2754-01 6 51900450 51900450 G C PKHD1 Missense_Mutation p.S1056W 0.20 deleterious(0) probably_damaging(0.981) TCGA-66-2754-01 6 53517046 53517046 C G KLHL31 Missense_Mutation p.G419R 0.23 deleterious(0) probably_damaging(1) TCGA-66-2754-01 6 7373571 7373571 A C CAGE1 Missense_Mutation p.L494R 0.21 tolerated(0.83) benign(0) TCGA-66-2754-01 6 75899527 75899527 G C COL12A1 Missense_Mutation p.C133W 0.08 probably_damaging(0.997) TCGA-66-2754-01 7 117431717 117431717 T C CTTNBP2 Silent p.G511G 0.46 TCGA-66-2754-01 7 121650911 121650911 C T PTPRZ1 Missense_Mutation p.S604F 0.88 tolerated_low_confidence(0.08) benign(0.02) TCGA-66-2754-01 7 121674395 121674395 C A PTPRZ1 Missense_Mutation p.D1749E 0.77 tolerated(0.16) benign(0.002) TCGA-66-2754-01 7 140534646 140534646 T C BRAF Silent p.L89L 0.80 TCGA-66-2754-01 7 141450234 141450234 A T SSBP1 3'UTR 0.36 TCGA-66-2754-01 7 142139721 142139721 C G TRBV7-6 Splice_Site p.X17_splice 0.83 TCGA-66-2754-01 7 142334748 142334748 G T TRBV20-1 Missense_Mutation p.S57I 0.80 deleterious(0.02) probably_damaging(0.914) TCGA-66-2754-01 7 142568305 142568305 C A EPHB6 Missense_Mutation p.P942T 0.40 tolerated(0.37) possibly_damaging(0.889) TCGA-66-2754-01 7 33380528 33380528 G A BBS9 Silent p.E406E 0.10 TCGA-66-2754-01 7 33380529 33380529 A G BBS9 Missense_Mutation p.R407G 0.10 tolerated(0.31) benign(0.023) TCGA-66-2754-01 7 43485093 43485093 C A HECW1 Silent p.A774A 0.58 TCGA-66-2754-01 7 50537776 50537776 G T DDC Missense_Mutation p.R379S 0.36 deleterious(0) probably_damaging(1) TCGA-66-2754-01 7 86468590 86468590 G T GRM3 Missense_Mutation p.G587V 0.22 deleterious(0) probably_damaging(1) TCGA-66-2754-01 8 100523350 100523350 G C VPS13B Missense_Mutation p.D1440H 0.91 deleterious(0) probably_damaging(0.99) TCGA-66-2754-01 8 103297515 103297515 T C UBR5 Missense_Mutation p.M1846V 0.58 deleterious(0) possibly_damaging(0.448) TCGA-66-2754-01 8 104427542 104427542 A T DCAF13 Silent p.P108P 0.36 TCGA-66-2754-01 8 123964395 123964395 C T ZHX2 Silent p.T215T 0.25 TCGA-66-2754-01 8 125463055 125463055 C T TRMT12 5'UTR 0.84 TCGA-66-2754-01 8 134145777 134145777 C A TG Missense_Mutation p.D2687E 0.25 tolerated(0.78) benign(0.014) TCGA-66-2754-01 8 134146939 134146939 G A TG Silent p.Q2736Q 0.65 TCGA-66-2754-01 8 144808519 144808519 C T FAM83H Missense_Mutation p.D1038N 0.16 deleterious(0) probably_damaging(0.998) TCGA-66-2754-01 8 145742508 145742508 G A RECQL4 Missense_Mutation p.P94S 0.47 tolerated(0.19) benign(0.023) TCGA-66-2754-01 8 18725364 18725364 C T PSD3 Missense_Mutation p.R485H 0.41 deleterious(0) probably_damaging(0.999) TCGA-66-2754-01 8 38095096 38095096 A G DDHD2 Missense_Mutation p.K151R 0.43 tolerated(1) benign(0.005) TCGA-66-2754-01 8 42407795 42407795 G A SMIM19 3'UTR 0.15 TCGA-66-2754-01 8 52366225 52366225 C T PXDNL Missense_Mutation p.G368E 0.32 tolerated(0.42) benign(0.029) TCGA-66-2754-01 8 61741222 61741222 G A CHD7 Missense_Mutation p.E1127K 0.32 benign(0.068) TCGA-66-2754-01 8 63936743 63936743 G C GGH Missense_Mutation p.Q168E 0.28 tolerated(0.09) benign(0) TCGA-66-2754-01 8 87755766 87755766 G C CNGB3 Silent p.G30G 0.37 TCGA-66-2754-01 8 92364054 92364054 C T SLC26A7 Missense_Mutation p.S386F 0.25 deleterious(0) probably_damaging(0.999) TCGA-66-2754-01 9 100364999 100364999 G A TSTD2 Missense_Mutation p.P435S 0.25 tolerated(0.76) benign(0.006) TCGA-66-2754-01 9 115337069 115337069 A T KIAA1958 Nonsense_Mutation p.K237* 0.17 TCGA-66-2754-01 9 116811778 116811778 C T ZNF618 Silent p.L639L 0.32 TCGA-66-2754-01 9 116811801 116811801 C T ZNF618 Missense_Mutation p.T647M 0.24 deleterious(0.01) possibly_damaging(0.616) TCGA-66-2754-01 9 117808912 117808912 G C TNC Missense_Mutation p.D1634E 0.32 tolerated(0.26) probably_damaging(0.957) TCGA-66-2754-01 9 133760965 133760965 G A ABL1 Silent p.E1115E 0.34 TCGA-66-2754-01 9 140907687 140907687 C A CACNA1B Missense_Mutation p.A756D 0.42 tolerated(0.06) benign(0.047) TCGA-66-2754-01 9 32573013 32573013 G C NDUFB6 Missense_Mutation p.R16G 0.16 deleterious(0.01) probably_damaging(0.971) TCGA-66-2754-01 9 90313662 90313662 G A DAPK1 Silent p.E901E 0.38 TCGA-66-2754-01 X 105855370 105855370 G T CXorf57 Silent p.P20P 0.87 TCGA-66-2754-01 X 115304403 115304403 C T AGTR2 Silent p.C290C 0.43 TCGA-66-2754-01 X 151358288 151358288 G T GABRA3 Missense_Mutation p.L353M 0.41 deleterious(0.02) probably_damaging(1) TCGA-66-2754-01 X 15677138 15677138 C G TMEM27 Splice_Site p.X68_splice 0.47 TCGA-66-2754-01 X 34148516 34148516 T A FAM47A Missense_Mutation p.N627I 0.40 deleterious(0.02) probably_damaging(0.991) TCGA-66-2754-01 X 34962426 34962426 A C FAM47B Missense_Mutation p.D493A 0.38 tolerated(0.1) benign(0.006) TCGA-66-2754-01 X 47102051 47102051 C T USP11 Silent p.H548H 0.96 TCGA-66-2754-01 X 48054489 48054489 G T SSX5 Missense_Mutation p.P49Q 0.39 deleterious_low_confidence(0) possibly_damaging(0.628) TCGA-66-2754-01 X 65238772 65238772 G A VSIG4 3'Flank 0.38 TCGA-66-2754-01 X 67938340 67938340 C T STARD8 Silent p.S528S 0.41 TCGA-66-2754-01 X 99551290 99551290 C T PCDH19 Silent p.K1144K 0.95 TCGA-66-2755-01 10 102986863 102986863 C A LBX1 3'UTR 0.20 TCGA-66-2755-01 10 108924028 108924028 G T SORCS1 Missense_Mutation p.A86E 0.46 tolerated_low_confidence(0.07) probably_damaging(0.962) TCGA-66-2755-01 10 114059288 114059288 C A TECTB Silent p.T291T 0.19 TCGA-66-2755-01 10 116930885 116930885 T C ATRNL1 Missense_Mutation p.W395R 0.26 deleterious(0) probably_damaging(0.999) TCGA-66-2755-01 10 26830517 26830517 C A APBB1IP Silent p.R351R 0.23 TCGA-66-2755-01 10 27382415 27382415 G C ANKRD26 Missense_Mutation p.L132V 0.09 deleterious(0.03) probably_damaging(0.991) TCGA-66-2755-01 10 50952155 50952155 T A OGDHL Silent p.V582V 0.29 TCGA-66-2755-01 10 75147502 75147502 C T ANXA7 Missense_Mutation p.R215H 0.15 deleterious(0) benign(0.377) TCGA-66-2755-01 10 87966375 87966375 G A GRID1 Missense_Mutation p.A89V 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-66-2755-01 10 95454663 95454663 T C FRA10AC1 Missense_Mutation p.Y84C 0.21 deleterious(0) probably_damaging(1) TCGA-66-2755-01 10 97376254 97376254 C G ALDH18A1 Missense_Mutation p.V529L 0.27 tolerated(0.83) benign(0.014) TCGA-66-2755-01 11 113780125 113780125 C A HTR3B Missense_Mutation p.T54N 0.19 tolerated(0.1) benign(0.424) TCGA-66-2755-01 11 113780126 113780126 C A HTR3B Silent p.T54T 0.19 TCGA-66-2755-01 11 116691537 116691537 G C APOA4 3'UTR 0.16 TCGA-66-2755-01 11 123476080 123476080 C G GRAMD1B Missense_Mutation p.S263C 0.08 deleterious(0.01) possibly_damaging(0.789) TCGA-66-2755-01 11 124294351 124294351 G T OR8B4 Silent p.V139V 0.22 TCGA-66-2755-01 11 128786380 128786380 C T KCNJ5 Silent p.T338T 0.24 TCGA-66-2755-01 11 47361293 47361293 A G MYBPC3 Missense_Mutation p.I659T 0.27 deleterious(0) probably_damaging(0.973) TCGA-66-2755-01 11 55432897 55432897 C G OR4C6 Silent p.S85S 0.22 TCGA-66-2755-01 11 55735331 55735331 C T OR10AG1 Silent p.L203L 0.26 TCGA-66-2755-01 11 57077504 57077504 A C TNKS1BP1 Missense_Mutation p.L894R 0.25 tolerated(0.17) benign(0.192) TCGA-66-2755-01 11 59283148 59283148 A T OR4D9 Missense_Mutation p.I255F 0.22 deleterious(0) probably_damaging(0.986) TCGA-66-2755-01 11 63176158 63176158 A G SLC22A9 Missense_Mutation p.M470V 0.30 tolerated(0.98) benign(0.01) TCGA-66-2755-01 11 64806067 64806067 C G SNX15 Missense_Mutation p.H230D 0.24 deleterious(0.03) possibly_damaging(0.451) TCGA-66-2755-01 11 65812855 65812855 G T GAL3ST3 Missense_Mutation p.A11D 0.09 tolerated_low_confidence(0.14) benign(0) TCGA-66-2755-01 11 71948227 71948227 G AT INPPL1 Frame_Shift_Ins p.S980Nfs*4 0.19 TCGA-66-2755-01 11 7334800 7334800 G A SYT9 Silent p.L224L 0.16 TCGA-66-2755-01 11 89537407 89537407 G A TRIM49 Silent p.A77A 0.25 TCGA-66-2755-01 11 89944446 89944446 C A CHORDC1 Missense_Mutation p.A124S 0.13 tolerated(0.54) benign(0.014) TCGA-66-2755-01 12 100041891 100041891 C A FAM71C 5'UTR 0.26 TCGA-66-2755-01 12 100887129 100887129 C A NR1H4 Missense_Mutation p.H10N 0.11 tolerated(1) benign(0.222) TCGA-66-2755-01 12 108169075 108169075 T C ASCL4 Missense_Mutation p.L28P 0.21 tolerated(0.23) benign(0.018) TCGA-66-2755-01 12 109696835 109696835 G T ACACB Missense_Mutation p.A2140S 0.18 deleterious(0.01) possibly_damaging(0.579) TCGA-66-2755-01 12 16753639 16753639 G - LMO3 Intron 0.15 TCGA-66-2755-01 12 21796970 21796970 C G LDHB Missense_Mutation p.R107P 0.24 deleterious(0.04) benign(0.021) TCGA-66-2755-01 12 51386099 51386099 T C SLC11A2 Silent p.S436S 0.19 TCGA-66-2755-01 12 52946483 52946483 G A KRT71 Missense_Mutation p.R127C 0.18 deleterious(0.01) benign(0.021) TCGA-66-2755-01 12 54118511 54118511 C A CALCOCO1 Silent p.R59R 0.15 TCGA-66-2755-01 12 57864530 57864530 G T GLI1 Silent p.V669V 0.26 TCGA-66-2755-01 12 57921292 57921292 C T MBD6 Silent p.P695P 0.25 TCGA-66-2755-01 12 78225350 78225350 T G NAV3 Missense_Mutation p.C37G 0.24 tolerated_low_confidence(0.23) benign(0.029) TCGA-66-2755-01 12 82746876 82746876 G A CCDC59 3'UTR 0.17 TCGA-66-2755-01 13 23914497 23914497 C G SACS Missense_Mutation p.W1173S 0.15 probably_damaging(0.997) TCGA-66-2755-01 13 30091895 30091895 T C SLC7A1 Missense_Mutation p.Q442R 0.10 tolerated(0.21) possibly_damaging(0.67) TCGA-66-2755-01 14 101416168 101416168 C T AL132709.5 5'Flank 0.31 TCGA-66-2755-01 14 105412026 105412026 G A AHNAK2 Silent p.D3254D 0.07 TCGA-66-2755-01 14 105412521 105412521 G A AHNAK2 Silent p.D3089D 0.11 TCGA-66-2755-01 14 19377642 19377642 C A OR11H12 Missense_Mutation p.P17T 0.22 tolerated(0.76) benign(0.002) TCGA-66-2755-01 14 44975752 44975752 G A FSCB Missense_Mutation p.P147S 0.26 tolerated(0.14) benign(0.066) TCGA-66-2755-01 14 55848689 55848689 G A ATG14 Nonsense_Mutation p.Q290* 0.34 TCGA-66-2755-01 14 64430698 64430698 A T SYNE2 Missense_Mutation p.T324S 0.23 benign(0.038) TCGA-66-2755-01 14 74409247 74409247 G A FAM161B Missense_Mutation p.P429L 0.15 deleterious(0.02) probably_damaging(0.997) TCGA-66-2755-01 15 102346591 102346591 G T OR4F6 Silent p.V223V 0.20 TCGA-66-2755-01 15 25475884 25475884 T C SNORD115-33 5'Flank 0.16 TCGA-66-2755-01 15 33922213 33922213 T A RYR3 Missense_Mutation p.Y918N 0.33 probably_damaging(0.978) TCGA-66-2755-01 15 51973965 51973965 G C SCG3 Missense_Mutation p.G5R 0.19 tolerated_low_confidence(0.4) benign(0) TCGA-66-2755-01 15 65759121 65759121 T A DPP8 Missense_Mutation p.N590Y 0.21 deleterious(0) probably_damaging(0.977) TCGA-66-2755-01 15 70961109 70961109 T C UACA Silent p.S638S 0.22 TCGA-66-2755-01 15 86124328 86124328 A C AKAP13 Missense_Mutation p.Q1010P 0.23 deleterious_low_confidence(0.01) benign(0.131) TCGA-66-2755-01 15 91824968 91824968 A T SV2B Missense_Mutation p.M462L 0.14 tolerated(0.6) benign(0.004) TCGA-66-2755-01 16 14026299 14026299 T G ERCC4 Intron 0.46 TCGA-66-2755-01 16 24902389 24902389 G A SLC5A11 Silent p.T288T 0.20 TCGA-66-2755-01 16 48134806 48134806 G C ABCC12 Silent p.G1005G 0.30 TCGA-66-2755-01 16 71958710 71958710 A T IST1 Silent p.A310A 0.24 TCGA-66-2755-01 17 16855826 16855826 C A TNFRSF13B Missense_Mutation p.G45C 0.51 tolerated(0.22) benign(0.248) TCGA-66-2755-01 17 16855827 16855827 C A TNFRSF13B Silent p.L44L 0.51 TCGA-66-2755-01 17 21730972 21730972 G A UBBP4 Missense_Mutation p.E92K 0.45 deleterious(0.01) possibly_damaging(0.657) TCGA-66-2755-01 17 34186068 34186068 G C C17orf66 Missense_Mutation p.Q255E 0.47 tolerated(0.6) benign(0.009) TCGA-66-2755-01 17 38192031 38192031 C T MED24 Silent p.R90R 0.41 TCGA-66-2755-01 17 39261638 39261638 A T KRTAP4-9 5'UTR 0.48 TCGA-66-2755-01 17 54969037 54969037 T A TRIM25 3'UTR 0.43 TCGA-66-2755-01 17 72363714 72363714 G T GPR142 Missense_Mutation p.A24S 0.41 deleterious_low_confidence(0) possibly_damaging(0.739) TCGA-66-2755-01 17 7577120 7577120 C G TP53 Missense_Mutation p.R273P 0.60 deleterious(0) probably_damaging(0.999) TCGA-66-2755-01 17 8141724 8141724 C T CTC1 Missense_Mutation p.V141I 0.44 tolerated(1) benign(0.001) TCGA-66-2755-01 18 29770033 29770033 C T MEP1B 5'UTR 0.21 TCGA-66-2755-01 18 61232707 61232707 G C SERPINB12 Silent p.T225T 0.22 TCGA-66-2755-01 18 66344201 66344201 G A TMX3 Missense_Mutation p.P445L 0.12 deleterious_low_confidence(0.03) benign(0.17) TCGA-66-2755-01 18 7231835 7231835 C A LRRC30 Missense_Mutation p.S233R 0.31 tolerated(0.45) benign(0.424) TCGA-66-2755-01 18 7231836 7231836 C A LRRC30 Missense_Mutation p.L234M 0.30 deleterious(0.05) probably_damaging(1) TCGA-66-2755-01 18 72345210 72345210 C A ZNF407 Missense_Mutation p.S745R 0.12 deleterious(0) probably_damaging(0.997) TCGA-66-2755-01 18 9535926 9535926 G A RALBP1 Silent p.T653T 0.30 TCGA-66-2755-01 19 11616987 11616987 C A ECSIT 3'UTR 0.13 TCGA-66-2755-01 19 12812151 12812151 C A TNPO2 3'UTR 0.27 TCGA-66-2755-01 19 12858298 12858298 G T ASNA1 Missense_Mutation p.K269N 0.18 tolerated(0.65) benign(0.004) TCGA-66-2755-01 19 13004297 13004297 G A GCDH Missense_Mutation p.G112E 0.21 tolerated_low_confidence(0.37) probably_damaging(0.959) TCGA-66-2755-01 19 19656165 19656165 G T CILP2 Silent p.R937R 0.23 TCGA-66-2755-01 19 2278808 2278808 G T C19orf35 Missense_Mutation p.H129Q 0.35 tolerated(0.21) benign(0.008) TCGA-66-2755-01 19 31039383 31039383 G T ZNF536 Missense_Mutation p.D953Y 0.20 deleterious(0) possibly_damaging(0.653) TCGA-66-2755-01 19 33697590 33697590 A T LRP3 Missense_Mutation p.Q559L 0.19 deleterious(0.02) benign(0.003) TCGA-66-2755-01 19 35616357 35616357 C A LGI4 Missense_Mutation p.G452C 0.36 deleterious(0) probably_damaging(1) TCGA-66-2755-01 19 35802819 35802819 A G MAG Splice_Site p.X539_splice 0.23 TCGA-66-2755-01 19 35804366 35804366 G T MAG 3'UTR 0.20 TCGA-66-2755-01 19 38125950 38125950 C T ZFP30 Missense_Mutation p.E498K 0.18 tolerated(0.06) probably_damaging(0.994) TCGA-66-2755-01 19 41888862 41888862 A G TMEM91 Intron 0.25 TCGA-66-2755-01 19 46215710 46215710 G T FBXO46 Silent p.P348P 0.41 TCGA-66-2755-01 19 46375420 46375420 G T FOXA3 Missense_Mutation p.G53W 0.22 deleterious(0.01) unknown(0) TCGA-66-2755-01 19 48607849 48607849 T C PLA2G4C Missense_Mutation p.T95A 0.22 deleterious(0) probably_damaging(0.986) TCGA-66-2755-01 19 51827045 51827045 C A IGLON5 Silent p.S96S 0.14 TCGA-66-2755-01 19 53762509 53762509 A C VN1R2 Missense_Mutation p.Q294P 0.17 deleterious(0) probably_damaging(0.98) TCGA-66-2755-01 19 55693107 55693107 C G PTPRH 3'UTR 0.27 TCGA-66-2755-01 19 5587258 5587258 T A SAFB2 Missense_Mutation p.Y953F 0.17 deleterious_low_confidence(0) benign(0.153) TCGA-66-2755-01 19 56538777 56538777 G T NLRP5 Missense_Mutation p.S393I 0.28 deleterious(0) probably_damaging(0.997) TCGA-66-2755-01 19 9067655 9067655 C A MUC16 Silent p.V6597V 0.23 TCGA-66-2755-01 1 118534064 118534064 C T SPAG17 Missense_Mutation p.A1817T 0.26 deleterious(0.04) probably_damaging(0.999) TCGA-66-2755-01 1 120506351 120506351 A G NOTCH2 Silent p.G587G 0.08 TCGA-66-2755-01 1 12918947 12918947 T A PRAMEF2 Missense_Mutation p.M28K 0.22 deleterious(0) benign(0.062) TCGA-66-2755-01 1 155007172 155007172 A G DCST1 Silent p.E77E 0.51 TCGA-66-2755-01 1 155231452 155231452 C T SCAMP3 Missense_Mutation p.R47Q 0.52 tolerated(0.61) benign(0.003) TCGA-66-2755-01 1 158632626 158632626 G A SPTA1 Missense_Mutation p.A777V 0.55 deleterious(0.02) benign(0.328) TCGA-66-2755-01 1 176525526 176525526 A T PAPPA2 Missense_Mutation p.N23I 0.48 tolerated_low_confidence(0.17) benign(0) TCGA-66-2755-01 1 176564569 176564569 G T PAPPA2 Missense_Mutation p.G610V 0.54 deleterious(0) probably_damaging(0.997) TCGA-66-2755-01 1 183616716 183616716 C T APOBEC4 3'UTR 0.55 TCGA-66-2755-01 1 201196167 201196167 C A IGFN1 Missense_Mutation p.F3648L 0.54 possibly_damaging(0.76) TCGA-66-2755-01 1 232575068 232575068 T C SIPA1L2 Missense_Mutation p.M1273V 0.08 tolerated(0.62) benign(0.001) TCGA-66-2755-01 1 237777577 237777577 G T RYR2 Missense_Mutation p.A1717S 0.49 possibly_damaging(0.783) TCGA-66-2755-01 1 29438932 29438932 C T EPB41 Missense_Mutation p.T823I 0.26 deleterious(0) probably_damaging(0.999) TCGA-66-2755-01 1 4772135 4772135 G T AJAP1 Nonsense_Mutation p.G69* 0.23 TCGA-66-2755-01 1 70339390 70339390 G A LRRC7 Intron 0.62 TCGA-66-2755-01 1 89652777 89652777 C A GBP4 Missense_Mutation p.E473D 0.17 deleterious(0.02) benign(0.048) TCGA-66-2755-01 1 99469972 99469972 C G LPPR5 Intron 0.27 TCGA-66-2755-01 20 1615916 1615916 G T SIRPG Missense_Mutation p.P360T 0.15 tolerated(0.22) benign(0.017) TCGA-66-2755-01 20 21695552 21695552 T A PAX1 3'UTR 0.43 TCGA-66-2755-01 20 30729590 30729590 G T TM9SF4 Silent p.V140V 0.14 TCGA-66-2755-01 20 33706298 33706298 T A EDEM2 Intron 0.33 TCGA-66-2755-01 20 36640671 36640671 C G TTI1 Silent p.V516V 0.25 TCGA-66-2755-01 20 37531435 37531435 G T PPP1R16B Silent p.L232L 0.13 TCGA-66-2755-01 20 37531436 37531436 G T PPP1R16B Splice_Site p.X232_splice 0.13 TCGA-66-2755-01 20 5903744 5903744 G A CHGB Missense_Mutation p.M318I 0.18 tolerated(0.19) benign(0.009) TCGA-66-2755-01 20 5903745 5903745 G T CHGB Missense_Mutation p.A319S 0.19 tolerated(0.07) benign(0.284) TCGA-66-2755-01 20 7894954 7894954 G T HAO1 Nonsense_Mutation p.Y134* 0.21 TCGA-66-2755-01 21 11039138 11039138 G T BAGE2 RNA 0.02 TCGA-66-2755-01 21 19165739 19165739 T A C21orf91 Missense_Mutation p.N296I 0.30 deleterious_low_confidence(0) benign(0.189) TCGA-66-2755-01 21 32119451 32119451 C A KRTAP21-2 Nonsense_Mutation p.G24* 0.39 TCGA-66-2755-01 22 17978494 17978494 G T CECR2 Missense_Mutation p.G112V 0.27 deleterious(0) probably_damaging(0.943) TCGA-66-2755-01 22 26736444 26736444 C T SEZ6L Silent p.G686G 0.20 TCGA-66-2755-01 22 36863772 36863772 G C TXN2 3'UTR 0.29 TCGA-66-2755-01 22 40078600 40078600 C G CACNA1I Missense_Mutation p.L1922V 0.37 tolerated(0.08) benign(0.364) TCGA-66-2755-01 22 50472776 50472776 G T TTLL8 Intron 0.14 TCGA-66-2755-01 2 130832537 130832537 G C POTEF Missense_Mutation p.I836M 0.12 tolerated_low_confidence(0.09) possibly_damaging(0.665) TCGA-66-2755-01 2 132021756 132021756 C G POTEE Missense_Mutation p.R910G 0.18 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-66-2755-01 2 141130622 141130622 G T LRP1B Missense_Mutation p.H3575N 0.24 benign(0.322) TCGA-66-2755-01 2 141130623 141130623 G T LRP1B Silent p.G3574G 0.24 TCGA-66-2755-01 2 141242925 141242925 C T LRP1B Missense_Mutation p.D3138N 0.09 benign(0) TCGA-66-2755-01 2 165383553 165383553 C T GRB14 Missense_Mutation p.A192T 0.29 deleterious(0) benign(0.209) TCGA-66-2755-01 2 166732682 166732682 C G TTC21B Missense_Mutation p.C1289S 0.25 deleterious(0.03) possibly_damaging(0.607) TCGA-66-2755-01 2 166848275 166848275 G T SCN1A Missense_Mutation p.P1837Q 0.29 tolerated(0.1) probably_damaging(1) TCGA-66-2755-01 2 169985205 169985205 C T LRP2 Missense_Mutation p.A4646T 0.24 probably_damaging(0.999) TCGA-66-2755-01 2 179447365 179447365 G C TTN Intron 0.11 TCGA-66-2755-01 2 179546138 179546138 G T TTN Missense_Mutation p.P11071H 0.08 TCGA-66-2755-01 2 179572473 179572473 C T TTN Silent p.V9607V 0.14 TCGA-66-2755-01 2 179596699 179596699 C A TTN Splice_Site p.X5635_splice 0.13 TCGA-66-2755-01 2 179600629 179600629 G TTT TTN Frame_Shift_Ins p.N4848Kfs*6 0.12 TCGA-66-2755-01 2 179610753 179610753 A G TTN Intron 0.11 TCGA-66-2755-01 2 183989162 183989162 G A NUP35 5'UTR 0.10 TCGA-66-2755-01 2 196673406 196673406 C A DNAH7 Missense_Mutation p.L3361F 0.15 tolerated(0.35) benign(0.021) TCGA-66-2755-01 2 198338507 198338507 A G COQ10B Silent p.L192L 0.19 TCGA-66-2755-01 2 207572048 207572048 G T DYTN Missense_Mutation p.L92I 0.10 deleterious(0) probably_damaging(1) TCGA-66-2755-01 2 21228401 21228401 G T APOB Missense_Mutation p.A3780D 0.30 benign(0.04) TCGA-66-2755-01 2 223386573 223386573 C T SGPP2 Silent p.L156L 0.17 TCGA-66-2755-01 2 32289075 32289075 G C SPAST Missense_Mutation p.V59L 0.36 tolerated(1) benign(0.001) TCGA-66-2755-01 2 33411958 33411958 T A LTBP1 Missense_Mutation p.C413S 0.08 deleterious(0) possibly_damaging(0.905) TCGA-66-2755-01 2 39406320 39406320 G T CDKL4 Missense_Mutation p.P312Q 0.23 deleterious(0) benign(0.047) TCGA-66-2755-01 2 39406321 39406321 G T CDKL4 Missense_Mutation p.P312T 0.24 deleterious(0.03) benign(0.016) TCGA-66-2755-01 2 49244674 49244674 A G FSHR Missense_Mutation p.Y110H 0.08 tolerated(0.48) benign(0.006) TCGA-66-2755-01 2 71740979 71740979 C T DYSF Silent p.Y229Y 0.12 TCGA-66-2755-01 2 79350317 79350318 - T REG1A Frame_Shift_Ins p.V161Cfs*45 0.15 TCGA-66-2755-01 2 80136875 80136875 C A CTNNA2 Missense_Mutation p.N336K 0.31 deleterious(0.01) possibly_damaging(0.793) TCGA-66-2755-01 2 80816542 80816542 C A CTNNA2 Missense_Mutation p.S707R 0.30 deleterious(0.01) possibly_damaging(0.488) TCGA-66-2755-01 2 84518056 84518056 C T FUNDC2P2 RNA 0.13 TCGA-66-2755-01 2 85617334 85617334 C T ELMOD3 Missense_Mutation p.H297Y 0.15 tolerated(0.34) benign(0.023) TCGA-66-2755-01 2 90108535 90108535 G T IGKV6D-41 Silent p.V2V 0.13 TCGA-66-2755-01 2 90248929 90248929 A G IGKV1D-43 Missense_Mutation p.R4G 0.11 tolerated(0.11) benign(0.028) TCGA-66-2755-01 3 107492320 107492320 A G BBX Silent p.L584L 0.08 TCGA-66-2755-01 3 109046768 109046768 C A DPPA4 3'UTR 0.19 TCGA-66-2755-01 3 113955941 113955942 GT - ZNF80 5'UTR 0.20 TCGA-66-2755-01 3 130159661 130159661 C T COL6A5 Missense_Mutation p.S2160L 0.36 tolerated(1) benign(0.283) TCGA-66-2755-01 3 137892418 137892418 C - DBR1 Frame_Shift_Del p.G83Efs*25 0.25 TCGA-66-2755-01 3 138739004 138739004 C T PRR23B Missense_Mutation p.R167Q 0.10 tolerated(0.27) benign(0.013) TCGA-66-2755-01 3 142388315 142388315 G C PLS1 Missense_Mutation p.V52L 0.08 tolerated(0.21) probably_damaging(0.936) TCGA-66-2755-01 3 149220633 149220633 C G TM4SF4 3'UTR 0.17 TCGA-66-2755-01 3 164905833 164905833 G T SLITRK3 Missense_Mutation p.A929D 0.33 deleterious_low_confidence(0) possibly_damaging(0.829) TCGA-66-2755-01 3 17052614 17052614 G T PLCL2 Missense_Mutation p.M466I 0.42 tolerated(0.53) benign(0.015) TCGA-66-2755-01 3 178916936 178916936 G T PIK3CA Missense_Mutation p.R108L 0.14 tolerated(0.11) probably_damaging(0.946) TCGA-66-2755-01 3 179478921 179478921 C T USP13 Missense_Mutation p.S657L 0.08 tolerated(0.58) benign(0.403) TCGA-66-2755-01 3 190366465 190366465 C T IL1RAP Intron 0.11 TCGA-66-2755-01 3 194407654 194407654 G T FAM43A Silent p.S33S 0.13 TCGA-66-2755-01 3 195452920 195452920 C A MUC20 Silent p.S482S 0.10 TCGA-66-2755-01 3 48629339 48629339 C A COL7A1 Missense_Mutation p.R450L 0.36 unknown(0) TCGA-66-2755-01 3 97852251 97852251 C A OR5H1 Missense_Mutation p.A237D 0.19 deleterious(0.01) probably_damaging(0.99) TCGA-66-2755-01 3 97852252 97852252 C A OR5H1 Silent p.A237A 0.19 TCGA-66-2755-01 4 103866467 103866467 T A SLC9B1 Missense_Mutation p.H179L 0.23 deleterious(0.01) benign(0.193) TCGA-66-2755-01 4 108816990 108816990 C G SGMS2 Missense_Mutation p.T94S 0.16 tolerated(0.18) possibly_damaging(0.804) TCGA-66-2755-01 4 119473401 119473409 CTTCTATCT TTTTATCC CEP170P1 RNA 0.24 TCGA-66-2755-01 4 119652646 119652646 T C SEC24D Missense_Mutation p.K898R 0.19 tolerated(0.07) benign(0.036) TCGA-66-2755-01 4 146041176 146041178 GAA - ABCE1 In_Frame_Del p.E341del 0.21 TCGA-66-2755-01 4 177098242 177098242 T A WDR17 Silent p.P1200P 0.26 TCGA-66-2755-01 4 177138061 177138061 G T ASB5 Missense_Mutation p.A257E 0.23 deleterious(0) probably_damaging(0.994) TCGA-66-2755-01 4 187004704 187004704 A G TLR3 Missense_Mutation p.I622V 0.23 tolerated(0.08) benign(0.196) TCGA-66-2755-01 4 26483128 26483128 G T CCKAR 3'UTR 0.23 TCGA-66-2755-01 4 36214041 36214041 T G ARAP2 Silent p.T370T 0.20 TCGA-66-2755-01 4 40099026 40099026 T G N4BP2 Silent p.V22V 0.26 TCGA-66-2755-01 4 40350899 40350899 G T CHRNA9 Missense_Mutation p.K122N 0.20 tolerated(0.45) benign(0.019) TCGA-66-2755-01 4 57843150 57843150 T A NOA1 Missense_Mutation p.Y201F 0.23 tolerated(0.14) benign(0.059) TCGA-66-2755-01 4 658691 658691 C T PDE6B Silent p.C717C 0.14 TCGA-66-2755-01 4 68938144 68938144 A G TMPRSS11F Silent p.D137D 0.22 TCGA-66-2755-01 4 71650542 71650542 G T RUFY3 Silent p.G339G 0.21 TCGA-66-2755-01 4 79800163 79800163 G A BMP2K Intron 0.10 TCGA-66-2755-01 4 90830530 90830530 G T MMRN1 Nonsense_Mutation p.G243* 0.20 TCGA-66-2755-01 5 1339043 1339043 G A CLPTM1L Silent p.N177N 0.35 TCGA-66-2755-01 5 138260946 138260946 C T CTNNA1 Silent p.V583V 0.32 TCGA-66-2755-01 5 147466029 147466029 A G SPINK5 Missense_Mutation p.Y115C 0.31 tolerated(0.05) possibly_damaging(0.77) TCGA-66-2755-01 5 147481344 147481344 G T SPINK5 Nonsense_Mutation p.E435* 0.34 TCGA-66-2755-01 5 156899445 156899445 G A NIPAL4 Missense_Mutation p.C293Y 0.26 deleterious(0) probably_damaging(1) TCGA-66-2755-01 5 169675696 169675696 A G LCP2 3'UTR 0.27 TCGA-66-2755-01 5 175530260 175530260 C A FAM153B Missense_Mutation p.S155Y 0.09 deleterious_low_confidence(0.03) possibly_damaging(0.55) TCGA-66-2755-01 5 175530261 175530261 C G FAM153B Silent p.S155S 0.09 TCGA-66-2755-01 5 177161903 177161903 G C FAM153A Silent p.S155S 0.26 TCGA-66-2755-01 5 177161904 177161904 G T FAM153A Missense_Mutation p.S155Y 0.21 deleterious_low_confidence(0.03) possibly_damaging(0.451) TCGA-66-2755-01 5 26890631 26890631 A G CDH9 Silent p.G432G 0.07 TCGA-66-2755-01 5 35727898 35727898 G T SPEF2 Missense_Mutation p.W1012C 0.13 deleterious(0) probably_damaging(0.997) TCGA-66-2755-01 5 427954 427954 G T AHRR Silent p.L269L 0.29 TCGA-66-2755-01 5 54281101 54281101 C G ESM1 Missense_Mutation p.R82T 0.30 tolerated(0.09) possibly_damaging(0.735) TCGA-66-2755-01 5 54281375 54281375 C T ESM1 5'UTR 0.31 TCGA-66-2755-01 5 54320153 54320153 G C GZMK Translation_Start_Site p.M1? 0.31 deleterious(0.01) probably_damaging(0.968) TCGA-66-2755-01 5 75858347 75858347 G T IQGAP2 Missense_Mutation p.K91N 0.25 deleterious(0) probably_damaging(0.955) TCGA-66-2755-01 5 7804743 7804744 - T ADCY2 Frame_Shift_Ins p.G942Wfs*61 0.39 TCGA-66-2755-01 6 105606478 105606478 T A POPDC3 Missense_Mutation p.D248V 0.20 deleterious(0) probably_damaging(0.997) TCGA-66-2755-01 6 108501625 108501625 T A NR2E1 Splice_Site p.X247_splice 0.17 TCGA-66-2755-01 6 118635468 118635468 A T SLC35F1 3'UTR 0.18 TCGA-66-2755-01 6 121577239 121577239 T C TBC1D32 Silent p.A642A 0.21 TCGA-66-2755-01 6 122737378 122737378 C G HSF2 Silent p.S156S 0.24 TCGA-66-2755-01 6 131971206 131971206 G T ENPP3 Missense_Mutation p.G65V 0.21 tolerated(0.13) possibly_damaging(0.772) TCGA-66-2755-01 6 132785134 132785134 G A STX7 Nonsense_Mutation p.Q231* 0.21 TCGA-66-2755-01 6 13305333 13305333 T C TBC1D7 Nonstop_Mutation p.*294Wext*32 0.20 TCGA-66-2755-01 6 136682314 136682314 T G MAP7 Missense_Mutation p.Q532H 0.22 tolerated(0.25) unknown(0) TCGA-66-2755-01 6 142400042 142400042 T C NMBR Splice_Site p.X141_splice 0.08 TCGA-66-2755-01 6 160662610 160662610 C G SLC22A2 Missense_Mutation p.G466A 0.25 tolerated(0.06) benign(0.436) TCGA-66-2755-01 6 18212751 18212751 G T KDM1B Missense_Mutation p.Q401H 0.09 deleterious(0.01) unknown(0) TCGA-66-2755-01 6 27420101 27420101 T C ZNF184 Missense_Mutation p.T413A 0.20 deleterious(0) probably_damaging(0.995) TCGA-66-2755-01 6 33271712 33271712 A G TAPBP Missense_Mutation p.L452P 0.26 tolerated_low_confidence(0.11) benign(0) TCGA-66-2755-01 6 34101347 34101347 G T GRM4 5'UTR 0.33 TCGA-66-2755-01 6 39847149 39847149 C T DAAM2 Missense_Mutation p.L581F 0.24 tolerated(0.07) benign(0) TCGA-66-2755-01 6 40400151 40400151 G T LRFN2 Silent p.P234P 0.21 TCGA-66-2755-01 6 6182228 6182228 G A F13A1 Silent p.F484F 0.24 TCGA-66-2755-01 6 99284000 99284000 G T POU3F2 Silent p.G417G 0.24 TCGA-66-2755-01 7 100551426 100551426 C T MUC3A Silent p.T59T 0.34 TCGA-66-2755-01 7 120911349 120911349 G A CPED1 Silent p.Q911Q 0.21 TCGA-66-2755-01 7 121612615 121612615 G T PTPRZ1 Missense_Mutation p.D109Y 0.16 deleterious(0) probably_damaging(1) TCGA-66-2755-01 7 121942911 121942911 T A FEZF1 Silent p.I337I 0.21 TCGA-66-2755-01 7 123136839 123136839 T A IQUB Missense_Mutation p.E382V 0.38 deleterious(0) possibly_damaging(0.901) TCGA-66-2755-01 7 126544700 126544700 A G GRM8 Silent p.R255R 0.18 TCGA-66-2755-01 7 136700864 136700864 C A CHRM2 Missense_Mutation p.P418T 0.28 deleterious(0) probably_damaging(1) TCGA-66-2755-01 7 136700865 136700865 C A CHRM2 Missense_Mutation p.P418H 0.28 deleterious(0) probably_damaging(1) TCGA-66-2755-01 7 141536980 141536980 C G PRSS37 Missense_Mutation p.E167Q 0.20 tolerated(0.21) benign(0.152) TCGA-66-2755-01 7 142120058 142120058 C A TRBV7-7 Missense_Mutation p.D37Y 0.42 deleterious(0.03) benign(0.03) TCGA-66-2755-01 7 158334283 158334283 C T PTPRN2 Intron 0.39 TCGA-66-2755-01 7 18067168 18067168 C A PRPS1L1 Missense_Mutation p.A80S 0.28 deleterious(0.03) probably_damaging(0.994) TCGA-66-2755-01 7 31692223 31692223 G A CCDC129 Missense_Mutation p.C998Y 0.26 tolerated(0.67) benign(0.286) TCGA-66-2755-01 7 37951816 37951816 T C SFRP4 Silent p.R232R 0.27 TCGA-66-2755-01 7 48335404 48335404 T G ABCA13 Silent p.T3021T 0.31 TCGA-66-2755-01 7 56087413 56087413 A G PSPH Missense_Mutation p.M52T 0.12 deleterious(0) possibly_damaging(0.568) TCGA-66-2755-01 7 5965287 5965287 C T CCZ1 Missense_Mutation p.T473M 0.14 deleterious(0) probably_damaging(0.912) TCGA-66-2755-01 7 6474584 6474584 C A DAGLB Missense_Mutation p.A163S 0.30 tolerated(0.5) benign(0.009) TCGA-66-2755-01 7 77764482 77764482 C G MAGI2 Missense_Mutation p.A963P 0.41 deleterious(0) probably_damaging(1) TCGA-66-2755-01 7 88966071 88966071 C A ZNF804B Missense_Mutation p.H1259N 0.30 deleterious(0.01) possibly_damaging(0.672) TCGA-66-2755-01 7 97363032 97363032 C A TAC1 Intron 0.30 TCGA-66-2755-01 8 124553306 124553306 T A FBXO32 5'UTR 0.53 TCGA-66-2755-01 8 139144765 139144765 G T FAM135B 3'UTR 0.21 TCGA-66-2755-01 8 39089565 39089565 T A ADAM32 Missense_Mutation p.F515L 0.28 tolerated(0.11) probably_damaging(0.996) TCGA-66-2755-01 8 48772318 48772318 C A PRKDC Missense_Mutation p.G2020C 0.27 possibly_damaging(0.882) TCGA-66-2755-01 8 61729027 61729027 G - CHD7 Frame_Shift_Del p.A861Qfs*27 0.20 TCGA-66-2755-01 8 61765230 61765230 G T CHD7 Missense_Mutation p.R2023M 0.26 possibly_damaging(0.85) TCGA-66-2755-01 8 66631489 66631489 C - PDE7A 3'UTR 0.21 TCGA-66-2755-01 8 70585503 70585503 C A SLCO5A1 Missense_Mutation p.W716C 0.08 deleterious(0) probably_damaging(1) TCGA-66-2755-01 8 77763271 77763271 G T ZFHX4 Missense_Mutation p.D1372Y 0.17 probably_damaging(0.963) TCGA-66-2755-01 8 77768135 77768135 A C ZFHX4 Missense_Mutation p.K2993T 0.16 probably_damaging(0.986) TCGA-66-2755-01 8 89053594 89053594 C A MMP16 3'UTR 0.16 TCGA-66-2755-01 9 114325433 114325433 C A PTGR1 Missense_Mutation p.D320Y 0.25 deleterious(0.01) possibly_damaging(0.561) TCGA-66-2755-01 9 123675887 123675887 C A TRAF1 Nonsense_Mutation p.E142* 0.21 TCGA-66-2755-01 9 125282113 125282113 A G OR1J4 Missense_Mutation p.K232E 0.25 deleterious_low_confidence(0.01) benign(0.25) TCGA-66-2755-01 9 130889721 130889721 C A PTGES2 Silent p.A92A 0.14 TCGA-66-2755-01 9 137717724 137717724 G T COL5A1 Missense_Mutation p.V1681F 0.19 unknown(0) TCGA-66-2755-01 9 138515920 138515920 C T GLT6D1 3'UTR 0.20 TCGA-66-2755-01 9 138657033 138657033 C A KCNT1 Silent p.R398R 0.16 TCGA-66-2755-01 9 88203244 88203244 T C AGTPBP1 Missense_Mutation p.M918V 0.24 deleterious(0) benign(0.169) TCGA-66-2755-01 X 101817539 101817539 G T NXF4 RNA 0.40 TCGA-66-2755-01 X 105280897 105280897 G C SERPINA7 Missense_Mutation p.F51L 0.40 deleterious(0.04) possibly_damaging(0.497) TCGA-66-2755-01 X 110979954 110979954 A G ALG13 Missense_Mutation p.I848V 0.41 tolerated(0.34) benign(0.004) TCGA-66-2755-01 X 1317468 1317468 G C CRLF2 Nonsense_Mutation p.Y199* 0.26 TCGA-66-2755-01 X 153461470 153461470 C A OPN1MW Missense_Mutation p.S345Y 0.11 deleterious(0.01) benign(0.027) TCGA-66-2755-01 X 30237233 30237233 C A MAGEB2 Missense_Mutation p.T179N 0.44 tolerated(0.11) possibly_damaging(0.596) TCGA-66-2755-01 X 32481678 32481678 T A DMD Missense_Mutation p.S1104C 0.23 probably_damaging(0.994) TCGA-66-2755-01 X 34148939 34148939 C A FAM47A Missense_Mutation p.R486L 0.32 tolerated(0.29) probably_damaging(0.969) TCGA-66-2755-01 X 50051889 50051889 G C CCNB3 Silent p.R240R 0.39 TCGA-66-2755-01 X 53246997 53246997 T A KDM5C Missense_Mutation p.Q168L 0.44 tolerated(0.14) benign(0.007) TCGA-66-2755-01 X 70327510 70327510 G A IL2RG 3'UTR 0.50 TCGA-66-2755-01 X 70832780 70832780 T G ACRC Missense_Mutation p.V675G 0.47 unknown(0) TCGA-66-2755-01 X 72092305 72092305 C T DMRTC1 Missense_Mutation p.C187Y 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-66-2755-01 X 73066617 73066617 C A XIST RNA 0.51 TCGA-66-2755-01 X 92964597 92964597 A T FAM133A Missense_Mutation p.E60V 0.46 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-66-2756-01 10 100195396 100195396 T A HPS1 Missense_Mutation p.H84L 0.29 deleterious(0.01) possibly_damaging(0.786) TCGA-66-2756-01 10 101715737 101715737 C A DNMBP Missense_Mutation p.Q498H 0.35 tolerated_low_confidence(0.19) benign(0.336) TCGA-66-2756-01 10 103559213 103559213 C T MGEA5 Splice_Site p.X399_splice 0.34 TCGA-66-2756-01 10 103909051 103909051 G T PPRC1 Missense_Mutation p.R1619L 0.28 deleterious(0.03) benign(0.25) TCGA-66-2756-01 10 116331078 116331078 C A ABLIM1 Silent p.P217P 0.05 TCGA-66-2756-01 10 120460919 120460919 T C CACUL1 Missense_Mutation p.N232S 0.30 deleterious(0.02) possibly_damaging(0.802) TCGA-66-2756-01 10 124271486 124271486 C A HTRA1 Missense_Mutation p.S393R 0.29 deleterious(0.04) possibly_damaging(0.821) TCGA-66-2756-01 10 128153489 128153489 G T C10orf90 Missense_Mutation p.A437D 0.36 deleterious(0) possibly_damaging(0.56) TCGA-66-2756-01 10 135112994 135112994 C A TUBGCP2 Missense_Mutation p.M131I 0.52 tolerated(0.18) benign(0.005) TCGA-66-2756-01 10 15120462 15120462 C A ACBD7 3'UTR 0.24 TCGA-66-2756-01 10 16916418 16916418 C T CUBN Missense_Mutation p.C3064Y 0.50 deleterious(0) benign(0.016) TCGA-66-2756-01 10 18289742 18289742 C A SLC39A12 Missense_Mutation p.P583T 0.27 deleterious(0) probably_damaging(1) TCGA-66-2756-01 10 22634681 22634681 C G SPAG6 Missense_Mutation p.Q19E 0.29 tolerated(0.77) benign(0.001) TCGA-66-2756-01 10 26359100 26359100 G C MYO3A Missense_Mutation p.A411P 0.50 deleterious(0) probably_damaging(1) TCGA-66-2756-01 10 27702174 27702174 C A PTCHD3 Missense_Mutation p.D336Y 0.25 deleterious(0.02) possibly_damaging(0.737) TCGA-66-2756-01 10 28233220 28233220 A G ARMC4 Silent p.T558T 0.20 TCGA-66-2756-01 10 38344866 38344866 G T ZNF33A Missense_Mutation p.G605V 0.48 deleterious(0) probably_damaging(1) TCGA-66-2756-01 10 49791061 49791061 G C ARHGAP22 Silent p.R57R 0.25 TCGA-66-2756-01 10 50835662 50835662 C G CHAT Silent p.V314V 0.27 TCGA-66-2756-01 10 51821235 51821235 C A RP11-324H6.5 Intron 0.36 TCGA-66-2756-01 10 62648482 62648482 T A RHOBTB1 Missense_Mutation p.K315M 0.20 tolerated(0.17) benign(0.043) TCGA-66-2756-01 10 68687090 68687090 A G LRRTM3 Missense_Mutation p.D139G 0.58 deleterious(0) probably_damaging(1) TCGA-66-2756-01 10 81154191 81154191 G C ZCCHC24 Silent p.R151R 0.13 TCGA-66-2756-01 10 88227065 88227065 T C WAPAL Missense_Mutation p.N781D 0.32 deleterious(0.02) probably_damaging(0.996) TCGA-66-2756-01 10 99361612 99361612 A C HOGA1 Splice_Site p.X234_splice 0.16 TCGA-66-2756-01 11 118828965 118828965 G A UPK2 3'UTR 0.25 TCGA-66-2756-01 11 118849876 118849876 C A FOXR1 Missense_Mutation p.P116T 0.78 tolerated(0.1) possibly_damaging(0.662) TCGA-66-2756-01 11 121060483 121060483 G C TECTA Missense_Mutation p.W2087C 0.56 deleterious_low_confidence(0) benign(0.413) TCGA-66-2756-01 11 14157086 14157086 T A RNA5SP332 3'Flank 0.45 TCGA-66-2756-01 11 18194982 18194982 C A MRGPRX4 Missense_Mutation p.A60D 0.48 deleterious(0) possibly_damaging(0.908) TCGA-66-2756-01 11 2189848 2189848 C T TH Silent p.R151R 0.41 TCGA-66-2756-01 11 26463486 26463486 A C ANO3 Missense_Mutation p.E23A 0.21 deleterious_low_confidence(0.04) benign(0.437) TCGA-66-2756-01 11 34668094 34668094 A T EHF Missense_Mutation p.D91V 0.38 deleterious(0) probably_damaging(0.999) TCGA-66-2756-01 11 44950850 44950850 G A TSPAN18 3'UTR 0.32 TCGA-66-2756-01 11 4510178 4510178 G T OR52K1 Missense_Mutation p.L16F 0.38 deleterious(0) probably_damaging(0.999) TCGA-66-2756-01 11 45277321 45277321 A C SYT13 Missense_Mutation p.L102R 0.22 deleterious(0.02) possibly_damaging(0.862) TCGA-66-2756-01 11 45893667 45893667 C G CRY2 Missense_Mutation p.P577R 0.24 deleterious_low_confidence(0.03) benign(0.039) TCGA-66-2756-01 11 46897450 46897450 G A LRP4 Missense_Mutation p.R1202C 0.46 deleterious(0) probably_damaging(0.999) TCGA-66-2756-01 11 47703571 47703571 C A AGBL2 Missense_Mutation p.G622V 0.15 deleterious(0) probably_damaging(1) TCGA-66-2756-01 11 47825022 47825022 T A NUP160 Missense_Mutation p.R915W 0.39 deleterious(0.04) possibly_damaging(0.76) TCGA-66-2756-01 11 49805558 49805558 C G RP11-707M1.1 RNA 0.41 TCGA-66-2756-01 11 55135929 55135929 T G OR4A15 Missense_Mutation p.F190L 0.22 tolerated_low_confidence(0.06) benign(0.139) TCGA-66-2756-01 11 56058536 56058536 C A OR8H1 Translation_Start_Site p.M1? 0.34 deleterious(0) probably_damaging(0.998) TCGA-66-2756-01 11 562207 562207 A G RASSF7 Missense_Mutation p.R85G 0.33 deleterious(0.02) probably_damaging(0.997) TCGA-66-2756-01 11 57799186 57799186 C A OR6Q1 Silent p.L254L 0.38 TCGA-66-2756-01 11 58377407 58377407 G T ZFP91 Missense_Mutation p.V159F 0.44 deleterious_low_confidence(0.03) benign(0.168) TCGA-66-2756-01 11 58979095 58979095 C G MPEG1 Missense_Mutation p.G415A 0.37 tolerated(0.21) benign(0.141) TCGA-66-2756-01 11 59361714 59361714 C A OSBP Missense_Mutation p.E442D 0.32 deleterious(0) probably_damaging(0.999) TCGA-66-2756-01 11 6048656 6048656 C G OR56A1 Missense_Mutation p.W93C 0.30 deleterious(0) probably_damaging(0.996) TCGA-66-2756-01 11 61049333 61049333 G A VWCE Missense_Mutation p.H238Y 0.12 deleterious(0.01) benign(0.328) TCGA-66-2756-01 11 61249263 61249263 G T RP11-286N22.8 Silent p.G146G 0.50 TCGA-66-2756-01 11 62344195 62344195 C A TUT1 Missense_Mutation p.G508C 0.32 deleterious(0) probably_damaging(0.999) TCGA-66-2756-01 11 62373335 62373335 C T EML3 Missense_Mutation p.V592I 0.22 tolerated(1) benign(0.078) TCGA-66-2756-01 11 62415076 62415076 C T INTS5 Missense_Mutation p.G826S 0.32 tolerated(0.35) benign(0.14) TCGA-66-2756-01 11 62760744 62760744 G T SLC22A8 Missense_Mutation p.L532I 0.17 deleterious(0) probably_damaging(0.996) TCGA-66-2756-01 11 64419624 64419624 T C NRXN2 Missense_Mutation p.K807E 0.23 deleterious(0.04) benign(0.045) TCGA-66-2756-01 11 66191304 66191304 A T NPAS4 Splice_Site p.X315_splice 0.53 TCGA-66-2756-01 11 66192136 66192136 C G NPAS4 Missense_Mutation p.A592G 0.42 tolerated(0.05) possibly_damaging(0.815) TCGA-66-2756-01 11 66206131 66206131 C A MRPL11 Missense_Mutation p.G32V 0.44 deleterious(0) probably_damaging(1) TCGA-66-2756-01 11 67191123 67191123 T A CARNS1 Nonsense_Mutation p.L635* 0.36 TCGA-66-2756-01 11 82536067 82536067 C G PRCP Missense_Mutation p.D479H 0.12 deleterious(0) probably_damaging(1) TCGA-66-2756-01 11 92543101 92543101 C A FAT3 Missense_Mutation p.Q3114K 0.49 benign(0.101) TCGA-66-2756-01 11 92616285 92616285 C G FAT3 Silent p.V4221V 0.37 TCGA-66-2756-01 11 92715461 92715461 C G MTNR1B Missense_Mutation p.Q358E 0.35 tolerated_low_confidence(0.06) benign(0.006) TCGA-66-2756-01 11 9608047 9608047 G T WEE1 Missense_Mutation p.V508L 0.43 tolerated(0.52) benign(0.128) TCGA-66-2756-01 11 99786867 99786867 C A CNTN5 Missense_Mutation p.P220Q 0.18 deleterious(0.01) probably_damaging(0.988) TCGA-66-2756-01 12 111057646 111057646 G C TCTN1 Missense_Mutation p.V76L 0.70 tolerated(0.15) benign(0.016) TCGA-66-2756-01 12 118575918 118575918 C - PEBP1 Frame_Shift_Del p.P71Rfs*22 0.13 TCGA-66-2756-01 12 13716971 13716971 G A GRIN2B Silent p.T1067T 0.62 TCGA-66-2756-01 12 15722408 15722408 C A PTPRO Missense_Mutation p.D935E 0.17 tolerated(0.08) benign(0) TCGA-66-2756-01 12 21069122 21069122 G A SLCO1B3 Missense_Mutation p.A684T 0.18 tolerated(0.24) benign(0.013) TCGA-66-2756-01 12 24736419 24736419 C A LINC00477 RNA 0.46 TCGA-66-2756-01 12 2760814 2760814 G - CACNA1C Frame_Shift_Del p.E1367Kfs*19 0.19 TCGA-66-2756-01 12 29689062 29689062 C T TMTC1 Intron 0.56 TCGA-66-2756-01 12 46245498 46245498 C G ARID2 Missense_Mutation p.P1198A 0.55 tolerated_low_confidence(0.09) possibly_damaging(0.78) TCGA-66-2756-01 12 48387259 48387259 G A COL2A1 Silent p.N317N 0.19 TCGA-66-2756-01 12 50050949 50050949 C A FMNL3 Missense_Mutation p.R210S 0.05 deleterious(0.02) benign(0.046) TCGA-66-2756-01 12 50357895 50357895 C A AQP5 Silent p.S183S 0.60 TCGA-66-2756-01 12 55641480 55641480 A T OR6C74 Nonsense_Mutation p.R137* 0.22 TCGA-66-2756-01 12 56231417 56231417 G C MMP19 Silent p.P370P 0.14 TCGA-66-2756-01 12 56733876 56733876 C T IL23A Silent p.T186T 0.17 TCGA-66-2756-01 12 62749201 62749201 G T USP15 Missense_Mutation p.G287V 0.46 deleterious(0) probably_damaging(1) TCGA-66-2756-01 12 6952794 6952794 A T GNB3 Splice_Site p.X144_splice 0.69 TCGA-66-2756-01 12 7362839 7362839 G T PEX5 3'UTR 0.18 TCGA-66-2756-01 12 7942241 7942241 T A NANOG Missense_Mutation p.L11M 0.48 tolerated(0.06) probably_damaging(0.968) TCGA-66-2756-01 12 9001331 9001331 C A A2ML1 Missense_Mutation p.P617T 0.20 deleterious(0.01) benign(0.342) TCGA-66-2756-01 12 9227156 9227156 C A A2M Missense_Mutation p.Q1252H 0.54 deleterious(0.01) probably_damaging(1) TCGA-66-2756-01 12 92821879 92821879 G T CLLU1OS Missense_Mutation p.T15N 0.65 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-66-2756-01 12 99478747 99478747 C A ANKS1B Missense_Mutation p.G861W 0.15 deleterious(0.02) probably_damaging(0.975) TCGA-66-2756-01 12 99793515 99793515 G T ANKS1B Silent p.I550I 0.19 TCGA-66-2756-01 13 100020152 100020152 G A UBAC2 Missense_Mutation p.E307K 0.67 deleterious(0) probably_damaging(0.997) TCGA-66-2756-01 13 111545261 111545261 G A ANKRD10 Intron 0.18 TCGA-66-2756-01 13 78474025 78474025 A T EDNRB Nonsense_Mutation p.L478* 0.64 TCGA-66-2756-01 14 101458324 101458324 C G SNORD114-30 RNA 0.17 TCGA-66-2756-01 14 101526921 101526921 T C MIR496 RNA 0.38 TCGA-66-2756-01 14 106311806 106311806 T C IGHD Missense_Mutation p.Q69R 0.53 tolerated(0.33) benign(0.077) TCGA-66-2756-01 14 106780656 106780656 A T IGHV4-28 Missense_Mutation p.Y70N 0.17 tolerated(0.3) benign(0.009) TCGA-66-2756-01 14 107078494 107078494 G A IGHV1-58 Missense_Mutation p.T77I 0.41 possibly_damaging(0.729) TCGA-66-2756-01 14 19563501 19563501 C A POTEG Missense_Mutation p.Q339K 0.22 tolerated(0.38) benign(0.16) TCGA-66-2756-01 14 22314989 22314989 G T TRAV8-2 Nonsense_Mutation p.G16* 0.14 TCGA-66-2756-01 14 22573998 22573998 C A TRAV24 Missense_Mutation p.T73N 0.12 tolerated(0.29) benign(0.008) TCGA-66-2756-01 14 23886518 23886518 C A MYH7 Nonsense_Mutation p.E1455* 0.57 TCGA-66-2756-01 14 24029196 24029196 C T AP1G2 Missense_Mutation p.R736Q 0.16 tolerated(0.72) benign(0.002) TCGA-66-2756-01 14 24787706 24787706 C A ADCY4 Missense_Mutation p.K1050N 0.56 tolerated(1) probably_damaging(0.999) TCGA-66-2756-01 14 24842951 24842951 G A NFATC4 Missense_Mutation p.R600Q 0.13 deleterious(0) probably_damaging(0.992) TCGA-66-2756-01 14 25043501 25043501 G T CTSG Silent p.R182R 0.25 TCGA-66-2756-01 14 28733790 28733790 G T BNIP3P1 RNA 0.46 TCGA-66-2756-01 14 36786011 36786011 A C MBIP Missense_Mutation p.L46R 0.17 deleterious(0.05) benign(0.169) TCGA-66-2756-01 14 36989335 36989335 C A NKX2-1 5'UTR 0.13 TCGA-66-2756-01 14 55493433 55493433 C A WDHD1 Missense_Mutation p.G25W 0.54 deleterious(0) probably_damaging(1) TCGA-66-2756-01 14 59113618 59113618 G T DACT1 Silent p.S759S 0.18 TCGA-66-2756-01 14 60928127 60928127 C A C14orf39 Missense_Mutation p.L354F 0.19 deleterious(0.01) probably_damaging(0.934) TCGA-66-2756-01 14 63671679 63671679 C A RHOJ Missense_Mutation p.A31D 0.15 deleterious(0) probably_damaging(0.995) TCGA-66-2756-01 14 63671680 63671680 C A RHOJ Silent p.A31A 0.15 TCGA-66-2756-01 14 64610582 64610582 G A SYNE2 Silent p.K5133K 0.56 TCGA-66-2756-01 14 69584943 69584943 C A DCAF5 Missense_Mutation p.V150L 0.48 tolerated(0.13) possibly_damaging(0.474) TCGA-66-2756-01 14 70238262 70238262 G T SRSF5 3'UTR 0.20 TCGA-66-2756-01 14 70245054 70245054 G T SLC10A1 Silent p.P313P 0.13 TCGA-66-2756-01 14 70634927 70634927 C A SLC8A3 Silent p.G71G 0.18 TCGA-66-2756-01 14 73141019 73141019 C A DPF3 Missense_Mutation p.G267V 0.23 deleterious(0) possibly_damaging(0.703) TCGA-66-2756-01 14 73550247 73550247 G T RBM25 Nonsense_Mutation p.G124* 0.21 TCGA-66-2756-01 14 73550249 73550249 A T RBM25 Silent p.G124G 0.19 TCGA-66-2756-01 14 74969447 74969447 G T LTBP2 Missense_Mutation p.N1693K 0.63 tolerated(0.31) benign(0.33) TCGA-66-2756-01 14 78063612 78063612 T C SPTLC2 Missense_Mutation p.T82A 0.54 tolerated(0.23) benign(0.032) TCGA-66-2756-01 14 88454509 88454509 C A GALC Missense_Mutation p.G103C 0.13 deleterious(0) probably_damaging(1) TCGA-66-2756-01 14 93043795 93043795 G T RIN3 Nonsense_Mutation p.E114* 0.20 TCGA-66-2756-01 14 93650150 93650150 C T MOAP1 Silent p.L146L 0.06 TCGA-66-2756-01 14 94129013 94129013 G A UNC79 Missense_Mutation p.A2059T 0.17 tolerated(0.19) possibly_damaging(0.72) TCGA-66-2756-01 14 94464454 94464454 T C LINC00521 RNA 0.16 TCGA-66-2756-01 15 102462698 102462698 C G OR4F4 Missense_Mutation p.D189H 0.29 deleterious(0) probably_damaging(1) TCGA-66-2756-01 15 23889062 23889062 C A MAGEL2 3'UTR 0.62 TCGA-66-2756-01 15 25328657 25328657 G C SNORD116-18 5'Flank 0.44 TCGA-66-2756-01 15 25472161 25472161 C A SNORD115-33 5'Flank 0.40 TCGA-66-2756-01 15 26792999 26792999 C G GABRB3 Missense_Mutation p.V455L 0.35 tolerated(0.28) benign(0.319) TCGA-66-2756-01 15 34355547 34355547 C T CHRM5 Missense_Mutation p.T210I 0.62 tolerated(0.22) probably_damaging(1) TCGA-66-2756-01 15 48548064 48548064 G A SLC12A1 Missense_Mutation p.A667T 0.47 tolerated(0.56) possibly_damaging(0.45) TCGA-66-2756-01 15 48826374 48826374 C A FBN1 Silent p.G255G 0.60 TCGA-66-2756-01 15 65491427 65491427 C A CILP Missense_Mutation p.E399D 0.60 tolerated(0.22) benign(0.289) TCGA-66-2756-01 15 70959875 70959875 G C UACA Missense_Mutation p.L1050V 0.66 tolerated(0.14) benign(0.011) TCGA-66-2756-01 15 72690670 72690670 G A TMEM202 Translation_Start_Site p.M1? 0.43 deleterious(0.01) probably_damaging(0.986) TCGA-66-2756-01 15 74426101 74426101 G C ISLR2 Missense_Mutation p.A336P 0.60 tolerated(0.22) possibly_damaging(0.608) TCGA-66-2756-01 15 80263171 80263171 A G BCL2A1 Silent p.G97G 0.58 TCGA-66-2756-01 16 14346300 14346300 C - MKL2 Frame_Shift_Del p.R834Afs*44 0.29 TCGA-66-2756-01 16 15045469 15045469 C T NPIPA1 Intron 0.42 TCGA-66-2756-01 16 2288483 2288483 C - DNASE1L2 3'UTR 0.29 TCGA-66-2756-01 16 2749842 2749842 C T KCTD5 Silent p.Y158Y 0.40 TCGA-66-2756-01 16 27509984 27509984 C A GTF3C1 Missense_Mutation p.R711L 0.46 deleterious(0) probably_damaging(0.999) TCGA-66-2756-01 16 27752197 27752197 A C KIAA0556 Missense_Mutation p.D860A 0.21 tolerated(0.13) benign(0.281) TCGA-66-2756-01 16 30719027 30719027 G T SRCAP Silent p.V209V 0.42 TCGA-66-2756-01 16 31309148 31309148 T A ITGAM Missense_Mutation p.L528Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-66-2756-01 16 46714640 46714640 C T VPS35 Missense_Mutation p.R150Q 0.22 deleterious(0) probably_damaging(1) TCGA-66-2756-01 16 48138185 48138185 A T ABCC12 Missense_Mutation p.L923Q 0.52 deleterious(0) probably_damaging(0.999) TCGA-66-2756-01 16 48594716 48594716 C T N4BP1 Missense_Mutation p.G613E 0.19 deleterious(0) probably_damaging(0.967) TCGA-66-2756-01 16 49433126 49433126 C T C16orf78 Silent p.H245H 0.21 TCGA-66-2756-01 16 53913764 53913764 A G FTO Silent p.T328T 0.59 TCGA-66-2756-01 16 58622794 58622794 C - CNOT1 Frame_Shift_Del p.G40Vfs*35 0.42 TCGA-66-2756-01 16 65038625 65038625 G A CDH11 Missense_Mutation p.R50C 0.09 deleterious(0) possibly_damaging(0.828) TCGA-66-2756-01 16 67976608 67976608 C T LCAT Silent p.V163V 0.09 TCGA-66-2756-01 16 70902623 70902624 - T HYDIN Frame_Shift_Ins p.N3720Kfs*28 0.43 TCGA-66-2756-01 16 72142741 72142741 C T DHX38 Missense_Mutation p.H1100Y 0.86 tolerated(0.08) benign(0.38) TCGA-66-2756-01 16 74678506 74678506 C A RFWD3 Missense_Mutation p.C307F 0.09 deleterious(0) probably_damaging(0.999) TCGA-66-2756-01 16 85132794 85132794 G C FAM92B Silent p.L304L 0.04 TCGA-66-2756-01 16 8722823 8722823 G T METTL22 Missense_Mutation p.V124L 0.52 tolerated(0.06) probably_damaging(0.959) TCGA-66-2756-01 16 87874694 87874694 C G SLC7A5 Silent p.V244V 0.35 TCGA-66-2756-01 16 87960508 87960508 G A CA5A Silent p.T62T 0.47 TCGA-66-2756-01 16 89169102 89169102 G T ACSF3 Missense_Mutation p.A253S 0.14 tolerated(0.42) possibly_damaging(0.46) TCGA-66-2756-01 16 9857766 9857766 G T GRIN2A Missense_Mutation p.T1212K 0.47 deleterious_low_confidence(0.02) probably_damaging(0.983) TCGA-66-2756-01 17 11837289 11837289 C A DNAH9 Nonsense_Mutation p.Y4130* 0.71 TCGA-66-2756-01 17 26691546 26691546 G A VTN 3'Flank 0.53 TCGA-66-2756-01 17 26970223 26970223 C A KIAA0100 Nonsense_Mutation p.E119* 0.42 TCGA-66-2756-01 17 26970224 26970224 C A KIAA0100 Missense_Mutation p.K118N 0.41 tolerated(0.31) benign(0.033) TCGA-66-2756-01 17 29541520 29541520 A G NF1 Missense_Mutation p.T482A 0.34 tolerated(0.74) benign(0.002) TCGA-66-2756-01 17 29676265 29676265 A T NF1 Missense_Mutation p.L2439F 0.37 deleterious(0) probably_damaging(0.986) TCGA-66-2756-01 17 2996172 2996172 A T OR1D2 Missense_Mutation p.V40E 0.22 deleterious(0) benign(0.347) TCGA-66-2756-01 17 30526045 30526045 G T RHOT1 Missense_Mutation p.D317Y 0.56 deleterious(0) probably_damaging(0.999) TCGA-66-2756-01 17 33520727 33520727 G T SLC35G3 Silent p.G200G 0.35 TCGA-66-2756-01 17 36352524 36352524 G A RP11-1407O15.2 Silent p.V421V 0.11 TCGA-66-2756-01 17 39150267 39150267 C A KRTAP3-3 Missense_Mutation p.C28F 0.48 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-66-2756-01 17 3967877 3967877 G A ZZEF1 Missense_Mutation p.S1499F 0.12 deleterious_low_confidence(0.04) benign(0.035) TCGA-66-2756-01 17 39959557 39959557 C G LEPREL4 Missense_Mutation p.G425R 0.16 deleterious(0) unknown(0) TCGA-66-2756-01 17 40330849 40330849 T C KCNH4 Missense_Mutation p.Q91R 0.26 tolerated(0.55) possibly_damaging(0.574) TCGA-66-2756-01 17 40913878 40913878 G T RAMP2 Missense_Mutation p.A42S 0.33 tolerated(0.07) benign(0.193) TCGA-66-2756-01 17 41246004 41246004 T A BRCA1 Missense_Mutation p.E515V 0.30 deleterious(0.03) probably_damaging(0.998) TCGA-66-2756-01 17 42427684 42427685 - T GRN Frame_Shift_Ins p.W147Lfs*13 0.42 TCGA-66-2756-01 17 43893944 43893944 C T CRHR1 Silent p.T79T 0.32 TCGA-66-2756-01 17 44039763 44039763 G - MAPT Frame_Shift_Del p.D22Tfs*22 0.35 TCGA-66-2756-01 17 46608014 46608014 C T HOXB1 Missense_Mutation p.A85T 0.33 tolerated(0.48) benign(0.004) TCGA-66-2756-01 17 48262808 48262808 G A COL1A1 3'UTR 0.32 TCGA-66-2756-01 17 4837541 4837541 C T GP1BA Missense_Mutation p.L548F 0.67 deleterious(0) unknown(0) TCGA-66-2756-01 17 7011806 7011806 C A ASGR2 Silent p.T109T 0.65 TCGA-66-2756-01 17 73517538 73517538 G T TSEN54 Silent p.V190V 0.25 TCGA-66-2756-01 17 7578407 7578407 G C TP53 Missense_Mutation p.R175G 0.79 deleterious(0) probably_damaging(0.985) TCGA-66-2756-01 17 76183410 76183410 C T AFMID 5'Flank 0.42 TCGA-66-2756-01 17 76558032 76558032 G C DNAH17 Missense_Mutation p.R534G 0.56 possibly_damaging(0.834) TCGA-66-2756-01 17 7750033 7750033 G A KDM6B Missense_Mutation p.R229Q 0.82 unknown(0) TCGA-66-2756-01 17 79409552 79409552 A G RP11-1055B8.7 Missense_Mutation p.T393A 0.47 probably_damaging(0.987) TCGA-66-2756-01 17 9757859 9757859 G T GLP2R Silent p.V184V 0.73 TCGA-66-2756-01 18 14183733 14183733 T C ANKRD20A5P RNA 0.16 TCGA-66-2756-01 18 31323871 31323871 C T ASXL3 Silent p.L1353L 0.74 TCGA-66-2756-01 18 55020039 55020039 C A ST8SIA3 5'UTR 0.74 TCGA-66-2756-01 18 59206307 59206307 G T CDH20 Missense_Mutation p.V487L 0.76 deleterious(0.02) benign(0.239) TCGA-66-2756-01 18 6943296 6943296 T C LAMA1 Missense_Mutation p.K2984E 0.23 deleterious(0) probably_damaging(0.999) TCGA-66-2756-01 18 9557338 9557338 C A PPP4R1 Missense_Mutation p.A691S 0.80 deleterious(0) probably_damaging(0.984) TCGA-66-2756-01 19 10602473 10602473 C G KEAP1 Missense_Mutation p.V369L 0.80 tolerated(0.36) benign(0.025) TCGA-66-2756-01 19 11280921 11280921 C G KANK2 Missense_Mutation p.G747R 0.66 deleterious(0) probably_damaging(1) TCGA-66-2756-01 19 11547248 11547248 C G PRKCSH Missense_Mutation p.L40V 0.71 deleterious(0) probably_damaging(0.978) TCGA-66-2756-01 19 12542492 12542492 C A ZNF443 Missense_Mutation p.G165V 0.68 deleterious(0.02) probably_damaging(0.961) TCGA-66-2756-01 19 12963060 12963060 A T MAST1 Silent p.P336P 0.71 TCGA-66-2756-01 19 18778777 18778777 G C KLHL26 Silent p.R190R 0.61 TCGA-66-2756-01 19 21541875 21541875 C A ZNF738 5'UTR 0.67 TCGA-66-2756-01 19 21910245 21910245 C G ZNF100 Missense_Mutation p.R290T 0.67 tolerated(0.1) benign(0.026) TCGA-66-2756-01 19 30935660 30935660 C A ZNF536 Missense_Mutation p.N397K 0.39 deleterious(0.01) probably_damaging(0.993) TCGA-66-2756-01 19 37118176 37118176 G T ZNF382 Silent p.T459T 0.34 TCGA-66-2756-01 19 37130209 37130209 T G ZNF461 Missense_Mutation p.E346D 0.09 tolerated(0.42) possibly_damaging(0.68) TCGA-66-2756-01 19 38860826 38860826 C G CATSPERG Missense_Mutation p.N1047K 0.08 deleterious(0) possibly_damaging(0.607) TCGA-66-2756-01 19 39589135 39589135 G A PAPL Nonsense_Mutation p.W53* 0.20 TCGA-66-2756-01 19 40357380 40357380 C A FCGBP Silent p.V5311V 0.34 TCGA-66-2756-01 19 40368654 40368654 T C FCGBP Missense_Mutation p.N4232D 0.10 possibly_damaging(0.621) TCGA-66-2756-01 19 41630695 41630695 A T CYP2F1 Missense_Mutation p.M346L 0.29 deleterious(0.04) benign(0.009) TCGA-66-2756-01 19 43439811 43439811 G C PSG7 Missense_Mutation p.P59A 0.35 deleterious(0) probably_damaging(0.991) TCGA-66-2756-01 19 43690491 43690491 C A PSG5 Intron 0.37 TCGA-66-2756-01 19 44514667 44514667 A T ZNF230 Missense_Mutation p.Q159L 0.37 tolerated(0.08) possibly_damaging(0.694) TCGA-66-2756-01 19 46998642 46998642 C A PNMAL2 Silent p.P27P 0.43 TCGA-66-2756-01 19 47207526 47207526 C A PRKD2 Silent p.V263V 0.43 TCGA-66-2756-01 19 48908234 48908234 C A GRIN2D Missense_Mutation p.R237S 0.39 deleterious(0.04) possibly_damaging(0.649) TCGA-66-2756-01 19 48922880 48922880 T C GRIN2D Missense_Mutation p.W634R 0.36 deleterious(0) probably_damaging(0.999) TCGA-66-2756-01 19 49136751 49136751 G C DBP Missense_Mutation p.Q238E 0.16 deleterious(0) probably_damaging(0.952) TCGA-66-2756-01 19 49863137 49863137 G A TEAD2 Missense_Mutation p.R66W 0.25 deleterious(0.03) possibly_damaging(0.54) TCGA-66-2756-01 19 50393834 50393834 C A IL4I1 Missense_Mutation p.W288L 0.56 tolerated(0.28) benign(0.034) TCGA-66-2756-01 19 51021381 51021381 G A LRRC4B Missense_Mutation p.A530V 0.58 tolerated_low_confidence(0.61) benign(0) TCGA-66-2756-01 19 51226814 51226814 T A CLEC11A Missense_Mutation p.V11E 0.45 deleterious_low_confidence(0) possibly_damaging(0.694) TCGA-66-2756-01 19 51503952 51503952 G T KLK8 Silent p.L31L 0.39 TCGA-66-2756-01 19 51559890 51559890 C A KLK13 Missense_Mutation p.R263L 0.39 deleterious(0.01) benign(0.138) TCGA-66-2756-01 19 51628465 51628465 C G SIGLEC9 Missense_Mutation p.N78K 0.30 tolerated(0.19) benign(0.326) TCGA-66-2756-01 19 51918132 51918132 A T SIGLEC10 Missense_Mutation p.C521S 0.22 deleterious(0) probably_damaging(0.999) TCGA-66-2756-01 19 53385123 53385123 A T ZNF320 Missense_Mutation p.C86S 0.38 tolerated(0.23) benign(0.091) TCGA-66-2756-01 19 53418495 53418495 T A ZNF888 RNA 0.40 TCGA-66-2756-01 19 54080616 54080616 G T ZNF331 Nonsense_Mutation p.E268* 0.34 TCGA-66-2756-01 19 54780770 54780770 G A LILRB2 Silent p.H458H 0.35 TCGA-66-2756-01 19 54823222 54823222 T C LILRA5 Silent p.T107T 0.37 TCGA-66-2756-01 19 55341617 55341617 C A KIR3DL1 Missense_Mutation p.Q408K 0.37 tolerated(0.16) benign(0.347) TCGA-66-2756-01 19 55418142 55418142 A G NCR1 Missense_Mutation p.N111S 0.38 deleterious(0.01) benign(0.005) TCGA-66-2756-01 19 55677417 55677417 C A DNAAF3 Missense_Mutation p.D81Y 0.51 deleterious(0.02) benign(0.144) TCGA-66-2756-01 19 55677418 55677418 C A DNAAF3 Silent p.V80V 0.51 TCGA-66-2756-01 19 55715298 55715298 A T PTPRH Silent p.T246T 0.41 TCGA-66-2756-01 19 55815127 55815127 G A BRSK1 Missense_Mutation p.D407N 0.19 tolerated(0.08) possibly_damaging(0.555) TCGA-66-2756-01 19 57325172 57325172 G C PEG3 Missense_Mutation p.I1546M 0.40 tolerated(0.2) benign(0.023) TCGA-66-2756-01 19 57641313 57641313 G T USP29 Missense_Mutation p.V424F 0.37 deleterious(0) probably_damaging(0.959) TCGA-66-2756-01 19 58101882 58101882 G T ZIK1 Nonsense_Mutation p.G235* 0.33 TCGA-66-2756-01 19 58189414 58189414 A G ZSCAN4 Missense_Mutation p.T177A 0.41 tolerated(0.17) benign(0.031) TCGA-66-2756-01 19 9578078 9578078 G A ZNF560 Silent p.P515P 0.76 TCGA-66-2756-01 19 9677376 9677376 T G ZNF121 Missense_Mutation p.H138P 0.69 tolerated(0.16) benign(0.02) TCGA-66-2756-01 1 103388930 103388930 G C COL11A1 Missense_Mutation p.P1206A 0.36 unknown(0) TCGA-66-2756-01 1 108703861 108703861 G T SLC25A24 Missense_Mutation p.F151L 0.30 tolerated(0.3) probably_damaging(1) TCGA-66-2756-01 1 113084512 113084512 C A ST7L Intron 0.28 TCGA-66-2756-01 1 113456488 113456488 C T SLC16A1 3'UTR 0.25 TCGA-66-2756-01 1 151156932 151156932 T C VPS72 Silent p.T141T 0.14 TCGA-66-2756-01 1 152057685 152057685 G A TCHHL1 Nonsense_Mutation p.Q825* 0.65 TCGA-66-2756-01 1 152276658 152276658 C A FLG Missense_Mutation p.Q3568H 0.39 unknown(0) TCGA-66-2756-01 1 152487969 152487969 C T CRCT1 Missense_Mutation p.S37F 0.26 unknown(0) TCGA-66-2756-01 1 153533783 153533783 G C S100A2 3'UTR 0.26 TCGA-66-2756-01 1 154575070 154575070 T C ADAR Silent p.P16P 0.63 TCGA-66-2756-01 1 154987802 154987802 G T ZBTB7B Missense_Mutation p.E256D 0.17 tolerated(0.6) benign(0.001) TCGA-66-2756-01 1 156617450 156617450 G T BCAN Missense_Mutation p.G206V 0.12 deleterious(0) probably_damaging(0.997) TCGA-66-2756-01 1 156626883 156626883 T G BCAN Missense_Mutation p.I735S 0.72 deleterious(0) possibly_damaging(0.832) TCGA-66-2756-01 1 156883542 156883542 C G PEAR1 Missense_Mutation p.F901L 0.58 tolerated(0.24) benign(0.003) TCGA-66-2756-01 1 156902245 156902245 G A LRRC71 Missense_Mutation p.G491S 0.11 tolerated(0.38) benign(0.244) TCGA-66-2756-01 1 157491042 157491042 C A FCRL5 Silent p.G760G 0.18 TCGA-66-2756-01 1 158435624 158435624 C A OR10K1 Silent p.T91T 0.15 TCGA-66-2756-01 1 158736095 158736095 G A OR6N1 Silent p.I126I 0.19 TCGA-66-2756-01 1 160535366 160535366 G C CD84 Silent p.P72P 0.61 TCGA-66-2756-01 1 161336228 161336228 C A C1orf192 Splice_Site p.X30_splice 0.03 TCGA-66-2756-01 1 167370723 167370723 A G POU2F1 Silent p.A495A 0.14 TCGA-66-2756-01 1 168549299 168549299 A T XCL1 Splice_Site p.X21_splice 0.68 TCGA-66-2756-01 1 168549300 168549300 G T XCL1 Splice_Site p.X21_splice 0.68 TCGA-66-2756-01 1 17264204 17264204 A C CROCC Missense_Mutation p.K421T 0.10 benign(0.352) TCGA-66-2756-01 1 17531716 17531716 G T PADI1 Missense_Mutation p.A2S 0.18 tolerated(0.81) probably_damaging(0.998) TCGA-66-2756-01 1 176525531 176525531 G T PAPPA2 Nonsense_Mutation p.E25* 0.67 TCGA-66-2756-01 1 176661310 176661310 A T PAPPA2 Missense_Mutation p.H827L 0.14 deleterious(0) probably_damaging(1) TCGA-66-2756-01 1 177250784 177250784 T A BRINP2 3'UTR 0.80 TCGA-66-2756-01 1 177937146 177937146 T A SEC16B 5'UTR 0.21 TCGA-66-2756-01 1 180904462 180904462 C T KIAA1614 Missense_Mutation p.R473C 0.36 deleterious(0.01) probably_damaging(1) TCGA-66-2756-01 1 181701923 181701923 G A CACNA1E Missense_Mutation p.G901R 0.34 tolerated(0.11) probably_damaging(0.953) TCGA-66-2756-01 1 183106930 183106930 G T LAMC1 Missense_Mutation p.D1481Y 0.64 deleterious(0.01) benign(0.332) TCGA-66-2756-01 1 19062357 19062357 G T PAX7 Missense_Mutation p.G463C 0.32 deleterious_low_confidence(0) possibly_damaging(0.896) TCGA-66-2756-01 1 197390270 197390270 T A CRB1 Missense_Mutation p.C438S 0.60 deleterious(0) probably_damaging(0.999) TCGA-66-2756-01 1 201044687 201044687 G T CACNA1S Silent p.G628G 0.22 TCGA-66-2756-01 1 201837922 201837922 G A IPO9 Missense_Mutation p.A668T 0.53 tolerated(0.16) benign(0.076) TCGA-66-2756-01 1 201980147 201980147 G T ELF3 5'UTR 0.28 TCGA-66-2756-01 1 206760193 206760193 C - RASSF5 Frame_Shift_Del p.L381* 0.23 TCGA-66-2756-01 1 2116079 2116079 C A PRKCZ Missense_Mutation p.L545M 0.57 deleterious(0) probably_damaging(0.984) TCGA-66-2756-01 1 212583782 212583782 G A TMEM206 Missense_Mutation p.P101S 0.57 tolerated_low_confidence(0.51) benign(0.017) TCGA-66-2756-01 1 213146147 213146147 C A VASH2 Missense_Mutation p.H197Q 0.53 deleterious(0) probably_damaging(0.999) TCGA-66-2756-01 1 216061815 216061815 C A USH2A Missense_Mutation p.G2726W 0.64 probably_damaging(1) TCGA-66-2756-01 1 216373149 216373149 C A USH2A Missense_Mutation p.V1211F 0.29 benign(0.392) TCGA-66-2756-01 1 217915365 217915365 G T SPATA17 Missense_Mutation p.K148N 0.67 deleterious(0.01) possibly_damaging(0.737) TCGA-66-2756-01 1 220325052 220325052 T G RAB3GAP2 Missense_Mutation p.T1308P 0.19 deleterious(0.01) benign(0.394) TCGA-66-2756-01 1 223176741 223176741 A T DISP1 Missense_Mutation p.T668S 0.06 tolerated(1) benign(0.001) TCGA-66-2756-01 1 226567665 226567665 C T PARP1 Missense_Mutation p.A501T 0.04 tolerated(0.54) benign(0) TCGA-66-2756-01 1 229568451 229568451 C A ACTA1 Missense_Mutation p.E102D 0.72 tolerated_low_confidence(0.06) possibly_damaging(0.57) TCGA-66-2756-01 1 22987627 22987627 C T C1QB Silent p.F170F 0.25 TCGA-66-2756-01 1 232144658 232144658 G T DISC1 Missense_Mutation p.D724Y 0.75 deleterious(0.01) possibly_damaging(0.873) TCGA-66-2756-01 1 233270786 233270786 G A PCNXL2 Silent p.F1270F 0.13 TCGA-66-2756-01 1 235747064 235747064 C A GNG4 Missense_Mutation p.M25I 0.66 tolerated(0.36) benign(0.034) TCGA-66-2756-01 1 237955441 237955441 C A RYR2 Missense_Mutation p.P4534T 0.16 benign(0.133) TCGA-66-2756-01 1 240656711 240656711 C A GREM2 Missense_Mutation p.R22L 0.14 deleterious(0.01) benign(0.406) TCGA-66-2756-01 1 24421460 24421460 C A MYOM3 Missense_Mutation p.V271L 0.26 tolerated(0.06) benign(0.214) TCGA-66-2756-01 1 27106961 27106961 G T ARID1A Missense_Mutation p.S2191I 0.54 possibly_damaging(0.557) TCGA-66-2756-01 1 2939247 2939247 G C ACTRT2 Missense_Mutation p.A333P 0.22 deleterious(0) probably_damaging(0.992) TCGA-66-2756-01 1 29587223 29587223 G T PTPRU Missense_Mutation p.V318L 0.20 deleterious(0.05) benign(0.014) TCGA-66-2756-01 1 32674705 32674705 G A DCDC2B Missense_Mutation p.G4D 0.23 deleterious(0.01) possibly_damaging(0.868) TCGA-66-2756-01 1 32713219 32713219 G T FAM167B Missense_Mutation p.G66V 0.31 tolerated(0.18) benign(0.1) TCGA-66-2756-01 1 3679954 3679954 G A CCDC27 Missense_Mutation p.A413T 0.24 deleterious(0) possibly_damaging(0.908) TCGA-66-2756-01 1 39924766 39924766 C G MACF1 Missense_Mutation p.L5010V 0.14 possibly_damaging(0.839) TCGA-66-2756-01 1 44437179 44437179 G T DPH2 Missense_Mutation p.R202L 0.43 tolerated(0.59) benign(0.03) TCGA-66-2756-01 1 54684040 54684040 C G MRPL37 3'UTR 0.24 TCGA-66-2756-01 1 57157066 57157066 G A PRKAA2 Splice_Site p.X79_splice 0.22 TCGA-66-2756-01 1 57476449 57476449 C T DAB1 Silent p.Q529Q 0.26 TCGA-66-2756-01 1 6206386 6206386 C - CHD5 Frame_Shift_Del p.G563Afs*30 0.35 TCGA-66-2756-01 1 6314950 6314950 G A GPR153 Missense_Mutation p.R6W 0.29 deleterious(0.02) probably_damaging(0.969) TCGA-66-2756-01 1 66036187 66036187 G T LEPR Missense_Mutation p.L24F 0.44 deleterious(0.01) benign(0.379) TCGA-66-2756-01 1 68942596 68942596 T A DEPDC1 3'UTR 0.33 TCGA-66-2756-01 1 70486774 70486774 G C LRRC7 Missense_Mutation p.D465H 0.16 deleterious(0.01) benign(0.181) TCGA-66-2756-01 1 70715678 70715678 A - SRSF11 Frame_Shift_Del p.K357Sfs*62 0.24 TCGA-66-2756-01 1 75596257 75596257 C G LHX8 5'UTR 0.75 TCGA-66-2756-01 1 7725091 7725091 G C CAMTA1 Missense_Mutation p.Q828H 0.09 deleterious_low_confidence(0.02) benign(0.009) TCGA-66-2756-01 1 79121152 79121152 G A IFI44 Missense_Mutation p.D266N 0.10 deleterious(0) probably_damaging(1) TCGA-66-2756-01 1 86591544 86591544 G A COL24A1 Missense_Mutation p.H159Y 0.29 tolerated(0.08) probably_damaging(0.999) TCGA-66-2756-01 1 86921130 86921130 C A CLCA2 Missense_Mutation p.L918I 0.28 tolerated(0.42) benign(0.334) TCGA-66-2756-01 1 92149357 92149357 C T TGFBR3 Missense_Mutation p.S832N 0.50 deleterious(0) probably_damaging(0.999) TCGA-66-2756-01 1 92979246 92979246 C A EVI5 Silent p.P800P 0.32 TCGA-66-2756-01 1 9305264 9305264 G T H6PD Missense_Mutation p.A91S 0.20 tolerated(0.74) benign(0.006) TCGA-66-2756-01 20 1961396 1961396 G T PDYN Missense_Mutation p.P113Q 0.19 tolerated(0.18) benign(0.195) TCGA-66-2756-01 20 20232368 20232368 C A C20orf26 Silent p.P763P 0.60 TCGA-66-2756-01 20 23473592 23473592 C A CST8 Intron 0.53 TCGA-66-2756-01 20 24940367 24940367 G C CST7 3'UTR 0.17 TCGA-66-2756-01 20 2796245 2796245 G C C20orf141 Missense_Mutation p.G108R 0.61 deleterious(0) probably_damaging(0.989) TCGA-66-2756-01 20 31024449 31024449 G T ASXL1 Missense_Mutation p.A1312S 0.27 tolerated(0.14) benign(0.007) TCGA-66-2756-01 20 34021838 34021838 C A GDF5 Nonsense_Mutation p.E459* 0.53 TCGA-66-2756-01 20 44592562 44592562 C A ZNF335 Missense_Mutation p.E390D 0.62 tolerated(0.05) benign(0.044) TCGA-66-2756-01 20 4837541 4837541 T C SLC23A2 3'UTR 0.60 TCGA-66-2756-01 20 55966871 55966871 C T RBM38 Silent p.G78G 0.62 TCGA-66-2756-01 20 62065179 62065179 G T KCNQ2 Silent p.V367V 0.64 TCGA-66-2756-01 20 62896781 62896781 A T PCMTD2 Missense_Mutation p.K194M 0.57 deleterious(0) probably_damaging(0.957) TCGA-66-2756-01 21 10916411 10916411 C A TPTE Missense_Mutation p.R412L 0.06 deleterious(0.01) benign(0.171) TCGA-66-2756-01 21 11039296 11039296 G T BAGE2 RNA 0.04 TCGA-66-2756-01 21 15554143 15554143 T A LIPI Silent p.P214P 0.57 TCGA-66-2756-01 21 30248684 30248684 T C N6AMT1 3'UTR 0.49 TCGA-66-2756-01 21 30547263 30547263 G T MAP3K7CL 3'UTR 0.41 TCGA-66-2756-01 21 31538288 31538288 A T CLDN17 Silent p.L216L 0.27 TCGA-66-2756-01 21 31768854 31768854 C T KRTAP13-1 Silent p.T150T 0.31 TCGA-66-2756-01 21 31874249 31874249 C A KRTAP19-5 Nonsense_Mutation p.G54* 0.42 TCGA-66-2756-01 21 31874250 31874250 A T KRTAP19-5 Nonsense_Mutation p.Y53* 0.41 TCGA-66-2756-01 21 43161307 43161307 G A RIPK4 Silent p.H682H 0.27 TCGA-66-2756-01 21 45987776 45987776 G T TSPEAR Missense_Mutation p.P66T 0.43 tolerated(0.14) possibly_damaging(0.72) TCGA-66-2756-01 21 47676828 47676828 G T MCM3AP Nonsense_Mutation p.C1269* 0.38 TCGA-66-2756-01 22 16287553 16287553 C - POTEH Frame_Shift_Del p.S112Afs*17 0.09 TCGA-66-2756-01 22 19483537 19483537 A G CDC45 Silent p.E224E 0.78 TCGA-66-2756-01 22 21838379 21838379 C A PI4KAP2 RNA 0.25 TCGA-66-2756-01 22 25010801 25010801 G T GGT1 Missense_Mutation p.V75L 0.61 tolerated(0.14) benign(0.012) TCGA-66-2756-01 22 27024391 27024391 G T CRYBA4 Missense_Mutation p.G147V 0.40 deleterious(0) probably_damaging(1) TCGA-66-2756-01 22 29628307 29628307 G T EMID1 Nonsense_Mutation p.G247* 0.57 TCGA-66-2756-01 22 29917005 29917005 T G THOC5 Missense_Mutation p.Y420S 0.21 deleterious(0) benign(0.066) TCGA-66-2756-01 22 35478551 35478551 C A ISX Silent p.T90T 0.16 TCGA-66-2756-01 22 40080410 40080410 G T CACNA1I Missense_Mutation p.K1978N 0.37 tolerated(0.18) benign(0.403) TCGA-66-2756-01 22 40139939 40139939 C G ENTHD1 Missense_Mutation p.Q523H 0.27 tolerated(1) benign(0) TCGA-66-2756-01 22 50216868 50216868 G T BRD1 Silent p.P366P 0.45 TCGA-66-2756-01 2 103335075 103335075 G T MFSD9 Missense_Mutation p.T410N 0.36 deleterious(0.01) probably_damaging(0.914) TCGA-66-2756-01 2 120005289 120005289 G T STEAP3 Missense_Mutation p.R186L 0.16 deleterious(0.05) benign(0.127) TCGA-66-2756-01 2 131520279 131520279 G A AMER3 Missense_Mutation p.G212S 0.31 tolerated(1) benign(0.002) TCGA-66-2756-01 2 132289288 132289288 A T CCDC74A Missense_Mutation p.D199V 0.35 tolerated(0.06) probably_damaging(0.982) TCGA-66-2756-01 2 141128330 141128330 C T LRP1B Missense_Mutation p.D3653N 0.70 possibly_damaging(0.822) TCGA-66-2756-01 2 141214043 141214043 G C LRP1B Missense_Mutation p.S3315C 0.77 possibly_damaging(0.902) TCGA-66-2756-01 2 149840148 149840148 C A KIF5C Silent p.T528T 0.15 TCGA-66-2756-01 2 154334943 154334943 G T RPRM Missense_Mutation p.P46Q 0.47 tolerated(0.1) benign(0.001) TCGA-66-2756-01 2 160242947 160242947 C A BAZ2B Missense_Mutation p.D1130Y 0.12 probably_damaging(0.994) TCGA-66-2756-01 2 161133862 161133862 G A RBMS1 Silent p.A365A 0.59 TCGA-66-2756-01 2 162274732 162274732 C T TBR1 Missense_Mutation p.P290S 0.16 deleterious(0) probably_damaging(0.985) TCGA-66-2756-01 2 162804144 162804144 T C SLC4A10 Silent p.D724D 0.04 TCGA-66-2756-01 2 163291984 163291984 C A KCNH7 Missense_Mutation p.A560S 0.69 deleterious(0) probably_damaging(0.995) TCGA-66-2756-01 2 163695056 163695056 C A KCNH7 5'UTR 0.66 TCGA-66-2756-01 2 170417051 170417051 T A FASTKD1 Missense_Mutation p.S273C 0.45 deleterious(0) benign(0.371) TCGA-66-2756-01 2 171225765 171225765 C G MYO3B Silent p.S283S 0.40 TCGA-66-2756-01 2 171686061 171686061 G C GAD1 Missense_Mutation p.K74N 0.34 tolerated(0.15) benign(0.051) TCGA-66-2756-01 2 178592440 178592440 G T PDE11A Nonsense_Mutation p.Y663* 0.27 TCGA-66-2756-01 2 17941244 17941244 C A GEN1 Missense_Mutation p.P12T 0.56 deleterious(0) probably_damaging(1) TCGA-66-2756-01 2 179446298 179446299 AC - TTN Frame_Shift_Del p.Y22233Cfs*3 0.31 TCGA-66-2756-01 2 201371764 201371764 T A KCTD18 5'UTR 0.32 TCGA-66-2756-01 2 202700416 202700416 G T CDK15 Missense_Mutation p.V261L 0.45 deleterious(0.01) probably_damaging(0.957) TCGA-66-2756-01 2 203624028 203624028 G T FAM117B Missense_Mutation p.R468M 0.39 deleterious(0) probably_damaging(0.998) TCGA-66-2756-01 2 204822597 204822597 A G ICOS Missense_Mutation p.R193G 0.33 tolerated(0.31) benign(0.001) TCGA-66-2756-01 2 218669327 218669327 C A TNS1 Splice_Site p.X1688_splice 0.47 TCGA-66-2756-01 2 220346141 220346141 C A SPEG Silent p.R1829R 0.38 TCGA-66-2756-01 2 223066851 223066851 G T PAX3 Missense_Mutation p.A411E 0.39 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-66-2756-01 2 224462367 224462367 T A SCG2 Missense_Mutation p.Q545L 0.36 deleterious(0.01) possibly_damaging(0.626) TCGA-66-2756-01 2 225657779 225657779 T G DOCK10 Missense_Mutation p.K1741N 0.29 tolerated(0.09) benign(0.193) TCGA-66-2756-01 2 230456334 230456334 C A DNER Missense_Mutation p.G183W 0.33 deleterious(0) probably_damaging(1) TCGA-66-2756-01 2 233348877 233348877 G T ECEL1 Missense_Mutation p.S414Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-66-2756-01 2 27728609 27728609 C T GCKR Missense_Mutation p.R259W 0.28 tolerated(0.17) benign(0.087) TCGA-66-2756-01 2 27890251 27890251 C T SLC4A1AP Nonsense_Mutation p.R380* 0.34 TCGA-66-2756-01 2 29152529 29152529 G T WDR43 Missense_Mutation p.V464F 0.09 tolerated(0.08) possibly_damaging(0.866) TCGA-66-2756-01 2 29404720 29404720 G T CLIP4 Silent p.R693R 0.62 TCGA-66-2756-01 2 31587050 31587050 C A XDH Missense_Mutation p.G869W 0.25 deleterious(0) probably_damaging(1) TCGA-66-2756-01 2 32750665 32750665 G T BIRC6 Missense_Mutation p.V3964L 0.72 probably_damaging(0.98) TCGA-66-2756-01 2 37143248 37143248 C A STRN Missense_Mutation p.D129Y 0.40 deleterious(0) possibly_damaging(0.824) TCGA-66-2756-01 2 40657159 40657159 T G SLC8A1 Missense_Mutation p.M88L 0.38 tolerated(0.48) benign(0.042) TCGA-66-2756-01 2 43804383 43804383 T C THADA Splice_Site p.X273_splice 0.26 TCGA-66-2756-01 2 49189894 49189894 A G FSHR Missense_Mutation p.L689P 0.19 deleterious(0.01) probably_damaging(0.951) TCGA-66-2756-01 2 55522967 55522967 G T CCDC88A Missense_Mutation p.P1772T 0.15 tolerated(0.09) benign(0.002) TCGA-66-2756-01 2 55544718 55544718 T C CCDC88A Missense_Mutation p.H1194R 0.52 deleterious(0.01) probably_damaging(0.986) TCGA-66-2756-01 2 60688134 60688134 A T BCL11A Missense_Mutation p.L638H 0.61 deleterious(0) possibly_damaging(0.869) TCGA-66-2756-01 2 64160937 64160937 G A VPS54 Nonsense_Mutation p.Q537* 0.31 TCGA-66-2756-01 2 69002433 69002433 A G ARHGAP25 Missense_Mutation p.I48V 0.27 tolerated(0.14) benign(0.001) TCGA-66-2756-01 2 7154903 7154903 G C RNF144A Missense_Mutation p.E101Q 0.11 tolerated(0.05) benign(0.395) TCGA-66-2756-01 2 71607696 71607696 G T ZNF638 Splice_Site p.X793_splice 0.23 TCGA-66-2756-01 2 74802644 74802644 G A M1AP Missense_Mutation p.P332L 0.32 deleterious(0) probably_damaging(1) TCGA-66-2756-01 2 79385853 79385853 C A REG3A Missense_Mutation p.C40F 0.63 deleterious(0.01) benign(0.167) TCGA-66-2756-01 2 86258514 86258514 C A POLR1A Missense_Mutation p.R1506L 0.34 tolerated(0.92) benign(0.004) TCGA-66-2756-01 2 89476590 89476590 C A IGKV2-24 Missense_Mutation p.G9W 0.30 tolerated(0.2) probably_damaging(0.999) TCGA-66-2756-01 2 90154149 90154149 C A IGKV3D-15 Missense_Mutation p.P79Q 0.43 deleterious(0) probably_damaging(0.936) TCGA-66-2756-01 2 96555616 96555616 T C ANKRD36C Missense_Mutation p.T385A 0.67 tolerated(0.28) possibly_damaging(0.482) TCGA-66-2756-01 2 98274445 98274445 C T ACTR1B Missense_Mutation p.A296T 0.17 tolerated(0.16) benign(0.001) TCGA-66-2756-01 2 99013001 99013001 G C CNGA3 Silent p.V456V 0.66 TCGA-66-2756-01 3 101062529 101062529 C A SENP7 Splice_Site p.X702_splice 0.15 TCGA-66-2756-01 3 122591354 122591354 G T DIRC2 Missense_Mutation p.V411F 0.14 deleterious(0) probably_damaging(0.94) TCGA-66-2756-01 3 122632822 122632822 G T SEMA5B Nonsense_Mutation p.S726* 0.13 TCGA-66-2756-01 3 126571494 126571494 G T CHCHD6 Missense_Mutation p.R139M 0.53 tolerated(0.12) probably_damaging(0.986) TCGA-66-2756-01 3 141161800 141161800 A G ZBTB38 Silent p.K190K 0.75 TCGA-66-2756-01 3 141626098 141626098 C A ATP1B3 Missense_Mutation p.L110I 0.20 deleterious(0.03) possibly_damaging(0.856) TCGA-66-2756-01 3 14801436 14801436 G C C3orf20 Silent p.L761L 0.11 TCGA-66-2756-01 3 14801437 14801437 G T C3orf20 Missense_Mutation p.D762Y 0.11 deleterious(0) probably_damaging(0.931) TCGA-66-2756-01 3 164781244 164781244 T C SI Missense_Mutation p.N298S 0.04 deleterious(0) probably_damaging(0.951) TCGA-66-2756-01 3 19389265 19389265 G T KCNH8 Missense_Mutation p.A207S 0.38 deleterious(0.01) possibly_damaging(0.661) TCGA-66-2756-01 3 25686809 25686809 T C TOP2B Silent p.S69S 0.22 TCGA-66-2756-01 3 33481291 33481291 T A UBP1 Missense_Mutation p.H17L 0.29 tolerated(0.08) benign(0.002) TCGA-66-2756-01 3 38318955 38318955 G C SLC22A13 Nonstop_Mutation p.*552Sext*85 0.37 TCGA-66-2756-01 3 38830446 38830446 C T SCN10A Splice_Site p.X157_splice 0.33 TCGA-66-2756-01 3 39543685 39543685 G T MOBP Missense_Mutation p.R42L 0.22 tolerated_low_confidence(0.1) probably_damaging(0.958) TCGA-66-2756-01 3 42728173 42728173 G T KLHL40 Missense_Mutation p.V355F 0.24 deleterious(0) possibly_damaging(0.849) TCGA-66-2756-01 3 50224169 50224169 G A SEMA3F Missense_Mutation p.R646Q 0.22 tolerated(0.12) possibly_damaging(0.82) TCGA-66-2756-01 3 53815622 53815622 C T CACNA1D Missense_Mutation p.R1594W 0.30 deleterious(0) possibly_damaging(0.797) TCGA-66-2756-01 3 62187209 62187209 G T PTPRG Missense_Mutation p.R453I 0.31 deleterious(0) probably_damaging(0.999) TCGA-66-2756-01 3 69028822 69028822 T A EOGT Missense_Mutation p.E360V 0.23 deleterious(0) possibly_damaging(0.895) TCGA-66-2756-01 3 69168128 69168128 C T LMOD3 Missense_Mutation p.V460I 0.25 tolerated(0.29) benign(0.044) TCGA-66-2756-01 3 70008496 70008496 G A MITF Silent p.Q362Q 0.39 TCGA-66-2756-01 3 79174626 79174626 T A ROBO1 Missense_Mutation p.D51V 0.26 tolerated_low_confidence(0.33) possibly_damaging(0.665) TCGA-66-2756-01 4 100542253 100542253 A T MTTP Missense_Mutation p.D793V 0.46 deleterious(0) benign(0.341) TCGA-66-2756-01 4 10448001 10448001 C A ZNF518B 5'UTR 0.36 TCGA-66-2756-01 4 110663664 110663664 T G CFI Missense_Mutation p.K506T 0.60 deleterious(0.04) possibly_damaging(0.77) TCGA-66-2756-01 4 111482577 111482577 G T ENPEP Missense_Mutation p.A913S 0.30 tolerated(0.46) benign(0.1) TCGA-66-2756-01 4 119219991 119219991 G T PRSS12 Missense_Mutation p.D578E 0.46 tolerated(0.51) benign(0.105) TCGA-66-2756-01 4 121774680 121774680 C A PRDM5 Nonsense_Mutation p.G65* 0.29 TCGA-66-2756-01 4 126242174 126242174 T A FAT4 Silent p.A1536A 0.21 TCGA-66-2756-01 4 126369706 126369706 A T FAT4 Missense_Mutation p.K2512I 0.23 benign(0.062) TCGA-66-2756-01 4 154197105 154197105 G T TRIM2 Missense_Mutation p.Q92H 0.16 deleterious(0.01) probably_damaging(1) TCGA-66-2756-01 4 155156620 155156620 C T DCHS2 Missense_Mutation p.V2607M 0.24 tolerated(0.66) benign(0.008) TCGA-66-2756-01 4 156135540 156135540 G T NPY2R Missense_Mutation p.R150M 0.56 tolerated(0.24) benign(0.347) TCGA-66-2756-01 4 162402218 162402218 A T FSTL5 Nonsense_Mutation p.L521* 0.21 TCGA-66-2756-01 4 16510279 16510279 C T LDB2 Missense_Mutation p.R257Q 0.44 deleterious(0.01) benign(0.135) TCGA-66-2756-01 4 1737455 1737455 C T TACC3 Intron 0.45 TCGA-66-2756-01 4 187075659 187075660 CT - FAM149A Frame_Shift_Del p.A86Lfs*7 0.27 TCGA-66-2756-01 4 2343282 2343282 G A ZFYVE28 Missense_Mutation p.P81S 0.43 tolerated(0.46) benign(0.081) TCGA-66-2756-01 4 25014047 25014047 C A LGI2 Missense_Mutation p.V244L 0.52 tolerated(0.07) benign(0.075) TCGA-66-2756-01 4 2733694 2733694 C G FAM193A 3'UTR 0.52 TCGA-66-2756-01 4 30724143 30724143 C A PCDH7 Missense_Mutation p.L367I 0.57 tolerated(1) possibly_damaging(0.659) TCGA-66-2756-01 4 30725461 30725461 A C PCDH7 Missense_Mutation p.K806T 0.29 deleterious(0.01) benign(0.007) TCGA-66-2756-01 4 36160997 36160997 C A ARAP2 Missense_Mutation p.G858V 0.20 deleterious(0) possibly_damaging(0.688) TCGA-66-2756-01 4 36160998 36160998 C A ARAP2 Missense_Mutation p.G858W 0.20 deleterious(0) probably_damaging(0.994) TCGA-66-2756-01 4 48584729 48584729 C A FRYL Nonsense_Mutation p.E591* 0.21 TCGA-66-2756-01 4 56465343 56465343 C T NMU Silent p.R165R 0.10 TCGA-66-2756-01 4 57181602 57181602 C T KIAA1211 Missense_Mutation p.A645V 0.33 deleterious(0.05) possibly_damaging(0.695) TCGA-66-2756-01 4 62812663 62812663 C A LPHN3 Missense_Mutation p.N749K 0.23 tolerated(1) benign(0.002) TCGA-66-2756-01 4 65175635 65175635 C A TECRL Missense_Mutation p.C189F 0.43 deleterious(0.01) benign(0.025) TCGA-66-2756-01 4 70351093 70351093 A G UGT2B4 Silent p.Y381Y 0.25 TCGA-66-2756-01 4 70361501 70361501 G T UGT2B4 Missense_Mutation p.L27M 0.20 deleterious(0) probably_damaging(1) TCGA-66-2756-01 4 76522207 76522207 T C CDKL2 Missense_Mutation p.I412V 0.44 deleterious(0.01) possibly_damaging(0.542) TCGA-66-2756-01 4 76811182 76811182 C A PPEF2 Silent p.T115T 0.30 TCGA-66-2756-01 4 81207620 81207620 G T FGF5 Missense_Mutation p.G201W 0.44 deleterious(0) probably_damaging(1) TCGA-66-2756-01 4 82369222 82369222 C A RASGEF1B Splice_Site p.X218_splice 0.50 TCGA-66-2756-01 4 82369223 82369223 C A RASGEF1B Silent p.L218L 0.50 TCGA-66-2756-01 4 83369094 83369094 G C ENOPH1 Missense_Mutation p.E36Q 0.47 deleterious(0.03) benign(0.005) TCGA-66-2756-01 4 87671973 87671973 G T PTPN13 Nonsense_Mutation p.G1001* 0.29 TCGA-66-2756-01 4 89199742 89199742 G A PPM1K 5'UTR 0.51 TCGA-66-2756-01 4 90874673 90874673 A G MMRN1 3'UTR 0.27 TCGA-66-2756-01 4 95583637 95583637 G T PDLIM5 Missense_Mutation p.M579I 0.45 deleterious(0.02) possibly_damaging(0.9) TCGA-66-2756-01 5 10414598 10414598 C T MARCH6 Silent p.I650I 0.71 TCGA-66-2756-01 5 112915353 112915353 G T YTHDC2 Missense_Mutation p.L1105F 0.65 tolerated(0.18) benign(0.082) TCGA-66-2756-01 5 11384928 11384928 G A CTNND2 Silent p.S342S 0.77 TCGA-66-2756-01 5 140166631 140166631 A G PCDHA1 Silent p.L252L 0.42 TCGA-66-2756-01 5 140167155 140167155 C A PCDHA1 Missense_Mutation p.A427E 0.63 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-66-2756-01 5 140223247 140223247 G A PCDHA8 Missense_Mutation p.G781R 0.60 tolerated_low_confidence(0.21) benign(0.003) TCGA-66-2756-01 5 140515490 140515490 G T PCDHB5 Missense_Mutation p.Q158H 0.68 deleterious_low_confidence(0.01) benign(0.038) TCGA-66-2756-01 5 140553340 140553340 C A PCDHB7 Missense_Mutation p.D308E 0.72 deleterious_low_confidence(0.01) possibly_damaging(0.464) TCGA-66-2756-01 5 140580788 140580788 G T PCDHB11 Missense_Mutation p.G481C 0.69 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-66-2756-01 5 140720359 140720359 C T PCDHGA2 Silent p.H607H 0.27 TCGA-66-2756-01 5 14465677 14465677 C T TRIO Silent p.R1897R 0.06 TCGA-66-2756-01 5 149503824 149503824 C T PDGFRB Missense_Mutation p.C671Y 0.61 deleterious(0) probably_damaging(1) TCGA-66-2756-01 5 150277688 150277688 C A ZNF300 Missense_Mutation p.W83C 0.63 tolerated(0.11) benign(0.032) TCGA-66-2756-01 5 16465700 16465700 C G ZNF622 Silent p.T25T 0.11 TCGA-66-2756-01 5 180625213 180625213 G T TRIM7 Missense_Mutation p.L332I 0.79 deleterious(0.01) probably_damaging(0.979) TCGA-66-2756-01 5 21975465 21975465 G A CDH12 Silent p.G87G 0.69 TCGA-66-2756-01 5 32087950 32087950 G C PDZD2 Missense_Mutation p.G1466R 0.67 tolerated(0.52) benign(0.157) TCGA-66-2756-01 5 32774933 32774933 G T NPR3 Missense_Mutation p.W393C 0.14 deleterious(0) probably_damaging(0.99) TCGA-66-2756-01 5 33461108 33461108 G C TARS Missense_Mutation p.G484A 0.13 deleterious(0) probably_damaging(0.984) TCGA-66-2756-01 5 35873682 35873682 T G IL7R Missense_Mutation p.F213C 0.03 deleterious(0) probably_damaging(0.983) TCGA-66-2756-01 5 41909865 41909865 A T C5orf51 Silent p.T75T 0.16 TCGA-66-2756-01 5 63257019 63257019 G T HTR1A Silent p.R176R 0.50 TCGA-66-2756-01 5 75954376 75954376 G T IQGAP2 Missense_Mutation p.A805S 0.73 tolerated(0.29) benign(0.265) TCGA-66-2756-01 5 801262 801262 G T ZDHHC11 Missense_Mutation p.T400K 0.08 tolerated_low_confidence(1) benign(0.009) TCGA-66-2756-01 6 107391664 107391664 G A BEND3 Missense_Mutation p.P244L 0.21 tolerated(0.06) probably_damaging(0.999) TCGA-66-2756-01 6 117130548 117130548 C A GPRC6A Missense_Mutation p.V143F 0.41 deleterious(0) possibly_damaging(0.757) TCGA-66-2756-01 6 117240430 117240430 C T RFX6 Nonsense_Mutation p.R385* 0.14 TCGA-66-2756-01 6 117681563 117681563 C A ROS1 Missense_Mutation p.R1129S 0.51 deleterious(0) benign(0.287) TCGA-66-2756-01 6 119252620 119252620 A C MCM9 Missense_Mutation p.V90G 0.56 tolerated(0.07) benign(0.095) TCGA-66-2756-01 6 123892145 123892145 A T TRDN Missense_Mutation p.L52Q 0.14 deleterious_low_confidence(0) possibly_damaging(0.472) TCGA-66-2756-01 6 130378584 130378584 G T L3MBTL3 Missense_Mutation p.W234L 0.32 deleterious(0) probably_damaging(0.999) TCGA-66-2756-01 6 132910476 132910476 A T TAAR5 Missense_Mutation p.F117Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-66-2756-01 6 133077158 133077158 C A VNN2 Missense_Mutation p.V121L 0.17 deleterious(0) benign(0.367) TCGA-66-2756-01 6 139564385 139564385 G T TXLNB Missense_Mutation p.R445S 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-66-2756-01 6 144098473 144098473 G T PHACTR2 Missense_Mutation p.S533I 0.26 deleterious(0) probably_damaging(0.984) TCGA-66-2756-01 6 148864899 148864899 A G SASH1 Missense_Mutation p.N765D 0.53 tolerated_low_confidence(0.35) benign(0.075) TCGA-66-2756-01 6 157488246 157488246 C - ARID1B Frame_Shift_Del p.N984Kfs*6 0.29 TCGA-66-2756-01 6 160908353 160908353 G C LPAL2 Intron 0.60 TCGA-66-2756-01 6 165792838 165792838 G T PDE10A Silent p.I610I 0.18 TCGA-66-2756-01 6 167796370 167796370 C T TCP10 5'UTR 0.45 TCGA-66-2756-01 6 24564511 24564511 C A KIAA0319 Missense_Mutation p.G784W 0.60 deleterious(0) probably_damaging(0.999) TCGA-66-2756-01 6 24564512 24564512 C A KIAA0319 Missense_Mutation p.E783D 0.60 deleterious(0.03) probably_damaging(0.947) TCGA-66-2756-01 6 25820133 25820133 T C SLC17A1 Missense_Mutation p.Y73C 0.72 deleterious(0.01) probably_damaging(0.995) TCGA-66-2756-01 6 28543354 28543354 T C SCAND3 Silent p.Q376Q 0.77 TCGA-66-2756-01 6 28962925 28962925 T A ZNF311 Missense_Mutation p.K618N 0.77 deleterious(0.04) probably_damaging(0.997) TCGA-66-2756-01 6 28962926 28962926 T G ZNF311 Missense_Mutation p.K618T 0.76 deleterious(0) probably_damaging(0.997) TCGA-66-2756-01 6 30672713 30672713 G A MDC1 Missense_Mutation p.P1416L 0.83 deleterious(0) possibly_damaging(0.549) TCGA-66-2756-01 6 43322911 43322911 G A ZNF318 Missense_Mutation p.H721Y 0.78 possibly_damaging(0.499) TCGA-66-2756-01 6 55638864 55638864 C G BMP5 Missense_Mutation p.R337T 0.10 deleterious(0.01) benign(0.059) TCGA-66-2756-01 6 71004007 71004007 C A COL9A1 Missense_Mutation p.V187L 0.45 unknown(0) TCGA-66-2756-01 6 80737728 80737728 G T TTK Missense_Mutation p.Q507H 0.51 deleterious(0.01) possibly_damaging(0.664) TCGA-66-2756-01 6 82461468 82461468 G A FAM46A Nonsense_Mutation p.Q131* 0.47 TCGA-66-2756-01 6 90415838 90415838 T A MDN1 Silent p.A2696A 0.50 TCGA-66-2756-01 6 96652006 96652006 T A FUT9 Missense_Mutation p.N325K 0.22 tolerated(1) benign(0.001) TCGA-66-2756-01 7 102738950 102738950 C A ARMC10 Missense_Mutation p.H328N 0.28 tolerated(0.52) possibly_damaging(0.507) TCGA-66-2756-01 7 102738951 102738951 A T ARMC10 Missense_Mutation p.H328L 0.27 deleterious(0.03) possibly_damaging(0.593) TCGA-66-2756-01 7 103143654 103143654 A G RELN Silent p.S2766S 0.20 TCGA-66-2756-01 7 107603475 107603475 C A LAMB1 Missense_Mutation p.D578Y 0.36 deleterious(0.02) possibly_damaging(0.67) TCGA-66-2756-01 7 10979689 10979689 G A NDUFA4 5'UTR 0.58 TCGA-66-2756-01 7 127254600 127254600 G A PAX4 Silent p.I116I 0.75 TCGA-66-2756-01 7 129094344 129094344 C T STRIP2 Missense_Mutation p.R228W 0.16 deleterious(0.01) probably_damaging(0.993) TCGA-66-2756-01 7 131195746 131195746 G A PODXL Missense_Mutation p.P183S 0.18 tolerated(0.42) possibly_damaging(0.61) TCGA-66-2756-01 7 139826529 139826529 C T KDM7A Missense_Mutation p.V266I 0.33 deleterious(0) probably_damaging(0.991) TCGA-66-2756-01 7 142605694 142605694 C T TRPV5 Missense_Mutation p.V726I 0.35 tolerated_low_confidence(0.36) benign(0.004) TCGA-66-2756-01 7 142654955 142654955 G T KEL Missense_Mutation p.L211I 0.52 tolerated(0.13) possibly_damaging(0.781) TCGA-66-2756-01 7 144074243 144074243 G C ARHGEF5 Missense_Mutation p.L1497F 0.16 deleterious(0) probably_damaging(0.986) TCGA-66-2756-01 7 156437450 156437450 G T RNF32 Missense_Mutation p.L91F 0.12 deleterious(0.03) probably_damaging(0.967) TCGA-66-2756-01 7 24874224 24874224 C A OSBPL3 Missense_Mutation p.V543L 0.49 deleterious(0) probably_damaging(0.951) TCGA-66-2756-01 7 30475671 30475671 T C NOD1 Missense_Mutation p.E855G 0.22 tolerated(0.07) probably_damaging(0.999) TCGA-66-2756-01 7 37955994 37955994 C T SFRP4 Missense_Mutation p.S49N 0.52 deleterious(0) possibly_damaging(0.646) TCGA-66-2756-01 7 37956126 37956126 A T SFRP4 Missense_Mutation p.I5N 0.52 deleterious(0.04) benign(0.018) TCGA-66-2756-01 7 38289044 38289044 A T TRGC2 Missense_Mutation p.I44K 0.48 deleterious(0) probably_damaging(0.977) TCGA-66-2756-01 7 4249700 4249700 C T SDK1 Silent p.S1815S 0.47 TCGA-66-2756-01 7 43594294 43594295 - A HECW1 Frame_Shift_Ins p.S1539Kfs*53 0.24 TCGA-66-2756-01 7 48086126 48086126 C T C7orf57 Silent p.S140S 0.26 TCGA-66-2756-01 7 50531071 50531071 T A DDC Missense_Mutation p.H434L 0.25 tolerated(0.05) possibly_damaging(0.894) TCGA-66-2756-01 7 54636708 54636708 G T VSTM2A Missense_Mutation p.R214M 0.25 deleterious(0.01) benign(0.065) TCGA-66-2756-01 7 5540380 5540380 C A FBXL18 Missense_Mutation p.R507L 0.64 tolerated(0.1) possibly_damaging(0.859) TCGA-66-2756-01 7 55910723 55910723 C A SEPT14 Missense_Mutation p.R157L 0.46 deleterious(0) probably_damaging(1) TCGA-66-2756-01 7 6730591 6730591 T C ZNF12 Missense_Mutation p.Y661C 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-66-2756-01 7 81331912 81331912 C A HGF Missense_Mutation p.K724N 0.41 tolerated(0.09) benign(0.344) TCGA-66-2756-01 7 8167591 8167591 C A ICA1 Missense_Mutation p.E414D 0.51 tolerated(0.3) benign(0.074) TCGA-66-2756-01 7 94039044 94039044 G T COL1A2 Missense_Mutation p.G316C 0.43 unknown(0) TCGA-66-2756-01 7 99754531 99754531 C T C7orf43 Silent p.L310L 0.14 TCGA-66-2756-01 8 101092427 101092427 C A RGS22 Missense_Mutation p.V92F 0.10 tolerated(0.46) benign(0.303) TCGA-66-2756-01 8 101541821 101541821 C T ANKRD46 Missense_Mutation p.A81T 0.08 tolerated(0.11) possibly_damaging(0.787) TCGA-66-2756-01 8 104898440 104898440 T C RIMS2 Missense_Mutation p.V538A 0.08 deleterious_low_confidence(0) benign(0.439) TCGA-66-2756-01 8 105160964 105160964 G T RIMS2 Intron 0.08 TCGA-66-2756-01 8 106815488 106815488 C A ZFPM2 Missense_Mutation p.Q1060K 0.35 tolerated(0.16) benign(0.11) TCGA-66-2756-01 8 110451189 110451189 T C PKHD1L1 Missense_Mutation p.V1275A 0.09 deleterious(0) possibly_damaging(0.796) TCGA-66-2756-01 8 110539082 110539082 T C PKHD1L1 Missense_Mutation p.L4185P 0.17 tolerated_low_confidence(0.79) benign(0) TCGA-66-2756-01 8 113299427 113299427 G T CSMD3 Missense_Mutation p.S3066Y 0.10 tolerated(0.39) possibly_damaging(0.811) TCGA-66-2756-01 8 113314025 113314025 G T CSMD3 Missense_Mutation p.L2813I 0.07 tolerated(0.06) benign(0.093) TCGA-66-2756-01 8 113353775 113353776 GG T CSMD3 Frame_Shift_Del p.H2195Mfs*41 0.33 TCGA-66-2756-01 8 118165221 118165221 G A SLC30A8 Missense_Mutation p.A104T 0.07 deleterious(0.02) benign(0.25) TCGA-66-2756-01 8 120233905 120233905 G T MAL2 Missense_Mutation p.V71L 0.12 deleterious(0) probably_damaging(0.996) TCGA-66-2756-01 8 124714890 124714890 A G ANXA13 Missense_Mutation p.Y101H 0.06 deleterious(0.01) probably_damaging(0.987) TCGA-66-2756-01 8 134488264 134488264 C T ST3GAL1 Missense_Mutation p.V2M 0.11 benign(0.009) TCGA-66-2756-01 8 143545865 143545865 C A BAI1 Nonsense_Mutation p.Y102* 0.68 TCGA-66-2756-01 8 144991188 144991188 C A PLEC Silent p.L4404L 0.24 TCGA-66-2756-01 8 145101592 145101592 A G SPATC1 Missense_Mutation p.Y504C 0.18 deleterious(0) probably_damaging(0.999) TCGA-66-2756-01 8 15998506 15998506 T C MSR1 Intron 0.38 TCGA-66-2756-01 8 15998507 15998507 G T MSR1 Intron 0.39 TCGA-66-2756-01 8 25280903 25280903 A G GNRH1 5'UTR 0.65 TCGA-66-2756-01 8 27918117 27918117 G C NUGGC Missense_Mutation p.T308S 0.64 tolerated(0.49) benign(0.17) TCGA-66-2756-01 8 3008929 3008929 G T CSMD1 Silent p.P2007P 0.65 TCGA-66-2756-01 8 32505746 32505746 G A NRG1 Intron 0.12 TCGA-66-2756-01 8 42233278 42233278 G T DKK4 Missense_Mutation p.P61Q 0.53 deleterious(0) probably_damaging(0.961) TCGA-66-2756-01 8 49637288 49637288 G T EFCAB1 3'UTR 0.23 TCGA-66-2756-01 8 52321974 52321974 A T PXDNL Missense_Mutation p.L737Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-66-2756-01 8 623391 623391 C A ERICH1 Missense_Mutation p.D321Y 0.63 deleterious(0.01) probably_damaging(0.998) TCGA-66-2756-01 8 67040550 67040550 G A TRIM55 Silent p.P60P 0.17 TCGA-66-2756-01 8 67791064 67791064 G C MCMDC2 Missense_Mutation p.E207Q 0.05 deleterious(0.05) probably_damaging(0.949) TCGA-66-2756-01 8 71646107 71646107 G C XKR9 Missense_Mutation p.L190F 0.14 deleterious(0) probably_damaging(1) TCGA-66-2756-01 8 72128977 72128977 C G EYA1 Missense_Mutation p.R437P 0.18 deleterious(0) benign(0.192) TCGA-66-2756-01 8 77617652 77617652 C T ZFHX4 Silent p.N443N 0.14 TCGA-66-2756-01 8 90996832 90996832 A C NBN 5'UTR 0.33 TCGA-66-2756-01 8 95178149 95178149 G T CDH17 Missense_Mutation p.N374K 0.11 deleterious(0) probably_damaging(0.955) TCGA-66-2756-01 8 99440455 99440455 A G KCNS2 Missense_Mutation p.H83R 0.10 deleterious(0) benign(0.134) TCGA-66-2756-01 9 100693291 100693291 G C HEMGN Missense_Mutation p.P129R 0.26 deleterious(0) probably_damaging(0.972) TCGA-66-2756-01 9 106889588 106889588 G A SMC2 Missense_Mutation p.E873K 0.22 tolerated(0.94) benign(0.005) TCGA-66-2756-01 9 107267220 107267220 T A OR13F1 Missense_Mutation p.L226Q 0.24 deleterious(0.02) benign(0.107) TCGA-66-2756-01 9 111732694 111732694 C A CTNNAL1 Silent p.V476V 0.27 TCGA-66-2756-01 9 117120444 117120444 C A AKNA Missense_Mutation p.E832D 0.30 tolerated(0.06) benign(0.037) TCGA-66-2756-01 9 117838787 117838787 C A TNC Missense_Mutation p.R914S 0.32 tolerated(0.07) benign(0.297) TCGA-66-2756-01 9 125281568 125281568 G T OR1J4 Missense_Mutation p.R50L 0.33 deleterious_low_confidence(0.02) benign(0.087) TCGA-66-2756-01 9 125330162 125330162 C A OR1L8 Missense_Mutation p.V199L 0.52 tolerated(0.31) benign(0.03) TCGA-66-2756-01 9 126520021 126520021 C T DENND1A Missense_Mutation p.R88H 0.26 deleterious(0.01) probably_damaging(1) TCGA-66-2756-01 9 126794783 126794783 G A LHX2 Missense_Mutation p.A340T 0.42 tolerated(0.7) benign(0) TCGA-66-2756-01 9 130672250 130672250 C A ST6GALNAC4 Missense_Mutation p.M233I 0.66 probably_damaging(0.999) TCGA-66-2756-01 9 132595737 132595737 C A C9orf78 Missense_Mutation p.R85S 0.42 tolerated(0.21) possibly_damaging(0.51) TCGA-66-2756-01 9 134136147 134136147 C A FAM78A 3'UTR 0.60 TCGA-66-2756-01 9 135204637 135204637 T A SETX Missense_Mutation p.Q783L 0.35 deleterious_low_confidence(0) benign(0.075) TCGA-66-2756-01 9 138645808 138645808 T C KCNT1 Missense_Mutation p.S154P 0.34 tolerated(0.06) benign(0.048) TCGA-66-2756-01 9 14722335 14722335 G T CER1 Silent p.L112L 0.29 TCGA-66-2756-01 9 14746970 14746970 A G FREM1 Missense_Mutation p.L2030P 0.15 deleterious(0) probably_damaging(0.987) TCGA-66-2756-01 9 14846058 14846058 G T FREM1 Silent p.A431A 0.21 TCGA-66-2756-01 9 2718879 2718879 C A KCNV2 Silent p.R380R 0.40 TCGA-66-2756-01 9 27213551 27213551 T A TEK Missense_Mutation p.F983I 0.02 deleterious(0) probably_damaging(1) TCGA-66-2756-01 9 35043619 35043619 G C C9orf131 Missense_Mutation p.K331N 0.11 tolerated(0.07) benign(0.36) TCGA-66-2756-01 9 35870133 35870133 C T OR13J1 Missense_Mutation p.R89Q 0.32 tolerated(0.44) benign(0.002) TCGA-66-2756-01 9 37436733 37436733 T A GRHPR Missense_Mutation p.L314Q 0.30 deleterious(0) probably_damaging(0.996) TCGA-66-2756-01 9 74587823 74587823 G A C9orf85 3'UTR 0.31 TCGA-66-2756-01 9 75407227 75407227 G A TMC1 Missense_Mutation p.D509N 0.32 tolerated(0.06) probably_damaging(0.979) TCGA-66-2756-01 9 90535697 90535697 T A SPATA31C1 RNA 0.22 TCGA-66-2756-01 X 100656649 100656649 T C GLA Missense_Mutation p.Y173C 0.36 deleterious(0.01) possibly_damaging(0.65) TCGA-66-2756-01 X 123654451 123654451 C A TENM1 Missense_Mutation p.A1073S 0.85 deleterious(0.01) probably_damaging(0.979) TCGA-66-2756-01 X 148797279 148797279 G T MAGEA11 Missense_Mutation p.A70S 0.77 tolerated_low_confidence(0.11) benign(0.004) TCGA-66-2756-01 X 153556267 153556267 G T TKTL1 Missense_Mutation p.E527D 0.84 tolerated(0.08) benign(0.008) TCGA-66-2756-01 X 26212413 26212413 A T MAGEB6 Silent p.G150G 0.56 TCGA-66-2756-01 X 29972727 29972727 C A IL1RAPL1 Silent p.A430A 0.63 TCGA-66-2756-01 X 29972728 29972728 C A IL1RAPL1 Missense_Mutation p.L431I 0.64 tolerated(0.06) probably_damaging(0.978) TCGA-66-2756-01 X 30269642 30269642 C A MAGEB1 Silent p.S344S 0.55 TCGA-66-2756-01 X 30269643 30269643 C A MAGEB1 Missense_Mutation p.H345N 0.59 tolerated(0.29) unknown(0) TCGA-66-2756-01 X 3238595 3238595 T C MXRA5 Missense_Mutation p.R1711G 0.14 deleterious(0) possibly_damaging(0.859) TCGA-66-2756-01 X 37026573 37026573 C T FAM47C Silent p.F30F 0.37 TCGA-66-2756-01 X 48463413 48463413 A T WDR13 Missense_Mutation p.Q484L 0.71 tolerated(0.08) benign(0.022) TCGA-66-2756-01 X 73062809 73062809 T A XIST RNA 0.85 TCGA-66-2756-01 X 73963708 73963708 C A KIAA2022 Missense_Mutation p.E228D 0.73 tolerated(0.18) possibly_damaging(0.671) TCGA-66-2756-01 X 78216657 78216657 A T P2RY10 Missense_Mutation p.I214F 0.62 deleterious(0) probably_damaging(0.991) TCGA-66-2756-01 X 79286062 79286062 C A TBX22 Missense_Mutation p.L339I 0.80 deleterious(0.02) benign(0.424) TCGA-66-2756-01 X 91066259 91066259 C A PCDH11X 5'UTR 0.74 TCGA-66-2756-01 X 99854605 99854605 C A TNMD Missense_Mutation p.P282H 0.71 deleterious(0) probably_damaging(0.997) TCGA-66-2756-01 X 99917334 99917334 C T SRPX2 Missense_Mutation p.R109C 0.39 deleterious(0) probably_damaging(0.999) TCGA-66-2756-01 Y 22918696 22918696 T G RPS4Y2 Silent p.V12V 0.88 TCGA-66-2757-01 10 115423110 115423110 C A NRAP Splice_Site p.X56_splice 0.66 TCGA-66-2757-01 10 51892656 51892656 A T FAM21A Missense_Mutation p.K1326M 0.68 deleterious(0) possibly_damaging(0.845) TCGA-66-2757-01 10 81061960 81061960 A G ZMIZ1 Missense_Mutation p.I706V 0.11 probably_damaging(0.977) TCGA-66-2757-01 10 98078223 98078223 G A DNTT Nonsense_Mutation p.W106* 0.70 TCGA-66-2757-01 11 101765763 101765763 A G ANGPTL5 Missense_Mutation p.Y232H 0.54 tolerated(0.54) benign(0.015) TCGA-66-2757-01 11 122795604 122795604 G T C11orf63 Splice_Site p.X289_splice 0.08 TCGA-66-2757-01 11 124135213 124135213 C A OR8G5 Missense_Mutation p.P164H 0.53 deleterious(0) probably_damaging(1) TCGA-66-2757-01 11 18320386 18320386 C A HPS5 Missense_Mutation p.A373S 0.37 deleterious(0.01) probably_damaging(0.977) TCGA-66-2757-01 11 20805279 20805279 C G NELL1 Missense_Mutation p.L80V 0.37 tolerated(0.15) possibly_damaging(0.63) TCGA-66-2757-01 11 48266819 48266819 T C OR4X2 Missense_Mutation p.L55P 0.06 deleterious(0) probably_damaging(0.999) TCGA-66-2757-01 11 5345298 5345298 G C OR51B2 Missense_Mutation p.P77R 0.43 deleterious(0.01) probably_damaging(0.972) TCGA-66-2757-01 11 55890765 55890765 A T OR8H3 Missense_Mutation p.Q306L 0.30 tolerated(0.06) benign(0.021) TCGA-66-2757-01 11 59224643 59224643 C T OR4D6 Silent p.D70D 0.36 TCGA-66-2757-01 11 6191107 6191107 G A OR52B2 Silent p.V150V 0.31 TCGA-66-2757-01 11 62490111 62490111 G A HNRNPUL2 Nonsense_Mutation p.Q353* 0.43 TCGA-66-2757-01 11 63767113 63767113 C A MACROD1 Splice_Site p.X262_splice 0.36 TCGA-66-2757-01 11 7507038 7507038 C A OLFML1 5'UTR 0.08 TCGA-66-2757-01 11 85707960 85707960 C T PICALM Silent p.L389L 0.51 TCGA-66-2757-01 11 8704275 8704275 C A RPL27A 5'UTR 0.31 TCGA-66-2757-01 11 92523317 92523317 C T FAT3 Missense_Mutation p.T1515I 0.26 benign(0.291) TCGA-66-2757-01 11 94113620 94113620 T C GPR83 Missense_Mutation p.N323D 0.65 tolerated(0.13) benign(0.047) TCGA-66-2757-01 12 100904587 100904587 G - NR1H4 Frame_Shift_Del p.G48Dfs*66 0.40 TCGA-66-2757-01 12 101584285 101584285 T C SLC5A8 Missense_Mutation p.Q265R 0.40 deleterious(0) probably_damaging(0.98) TCGA-66-2757-01 12 104107464 104107464 G T STAB2 Missense_Mutation p.K1485N 0.42 tolerated(0.52) benign(0.023) TCGA-66-2757-01 12 121855404 121855404 C T RNF34 Missense_Mutation p.T109I 0.39 deleterious(0.04) probably_damaging(1) TCGA-66-2757-01 12 132561094 132561094 A T EP400 Missense_Mutation p.T3019S 0.25 possibly_damaging(0.651) TCGA-66-2757-01 12 21015494 21015494 T A SLCO1B3 Splice_Site p.X210_splice 0.30 TCGA-66-2757-01 12 29423457 29423457 G T FAR2 Silent p.V25V 0.41 TCGA-66-2757-01 12 31237560 31237560 A G DDX11 Missense_Mutation p.Q146R 0.40 tolerated(0.11) benign(0.022) TCGA-66-2757-01 12 33579334 33579334 C A SYT10 Missense_Mutation p.C83F 0.43 tolerated(0.09) benign(0) TCGA-66-2757-01 12 406233 406233 G A KDM5A Missense_Mutation p.S1403F 0.28 deleterious(0.02) benign(0.005) TCGA-66-2757-01 12 41966881 41966881 C A PDZRN4 Missense_Mutation p.T767N 0.39 tolerated(0.08) possibly_damaging(0.649) TCGA-66-2757-01 12 52449850 52449850 G T NR4A1 Missense_Mutation p.A318S 0.40 deleterious(0.01) possibly_damaging(0.559) TCGA-66-2757-01 12 52760914 52760914 G T KRT85 Silent p.P92P 0.29 TCGA-66-2757-01 12 52882246 52882246 C A KRT6A Silent p.L430L 0.44 TCGA-66-2757-01 12 8197386 8197386 G A FOXJ2 Missense_Mutation p.A217T 0.43 tolerated(0.45) benign(0.001) TCGA-66-2757-01 12 9230374 9230374 G T A2M Missense_Mutation p.L1067I 0.35 deleterious(0.01) benign(0.038) TCGA-66-2757-01 13 101287433 101287433 G T TMTC4 Missense_Mutation p.L407M 0.85 deleterious(0.04) possibly_damaging(0.835) TCGA-66-2757-01 13 32376628 32376628 C G RXFP2 3'UTR 0.06 TCGA-66-2757-01 13 33684944 33684944 C A STARD13 Missense_Mutation p.G903V 0.72 deleterious(0.05) benign(0.375) TCGA-66-2757-01 13 36878767 36878767 T G SPG20 Missense_Mutation p.Y579S 0.83 deleterious(0) probably_damaging(0.999) TCGA-66-2757-01 14 104026023 104026023 T C BAG5 3'UTR 0.40 TCGA-66-2757-01 14 106926397 106926397 C A IGHV3-43 Missense_Mutation p.D49Y 0.36 deleterious_low_confidence(0) benign(0.194) TCGA-66-2757-01 14 107211191 107211191 G A IGHV3-73 Missense_Mutation p.P33L 0.06 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-66-2757-01 14 20389649 20389649 A T OR4K5 Missense_Mutation p.K295M 0.26 deleterious(0.03) benign(0.303) TCGA-66-2757-01 14 20404281 20404281 C T OR4K1 Silent p.G152G 0.20 TCGA-66-2757-01 14 24655080 24655080 G C IPO4 Missense_Mutation p.H386D 0.36 deleterious(0) benign(0.221) TCGA-66-2757-01 14 24900891 24900891 C T KHNYN Silent p.L142L 0.45 TCGA-66-2757-01 14 26949315 26949315 C A NOVA1 Silent p.T105T 0.62 TCGA-66-2757-01 14 33684419 33684419 G A NPAS3 Missense_Mutation p.D58N 0.56 tolerated(0.66) possibly_damaging(0.539) TCGA-66-2757-01 14 70713294 70713294 C T ADAM21P1 RNA 0.43 TCGA-66-2757-01 14 73717712 73717712 C T PAPLN Missense_Mutation p.T188I 0.04 tolerated(0.08) benign(0.036) TCGA-66-2757-01 14 81609743 81609743 C A TSHR Missense_Mutation p.N447K 0.66 deleterious(0.02) benign(0.002) TCGA-66-2757-01 14 86087774 86087774 C A FLRT2 5'UTR 0.71 TCGA-66-2757-01 14 88940130 88940130 C A PTPN21 Missense_Mutation p.R843L 0.09 deleterious(0.01) benign(0.233) TCGA-66-2757-01 15 21071366 21071366 G A POTEB2 Missense_Mutation p.T82I 0.29 deleterious(0.04) possibly_damaging(0.544) TCGA-66-2757-01 15 22369104 22369104 T C OR4M2 Missense_Mutation p.Y177H 0.24 deleterious(0) probably_damaging(0.975) TCGA-66-2757-01 15 25585248 25585248 C A UBE3A Missense_Mutation p.G831C 0.38 deleterious(0) probably_damaging(1) TCGA-66-2757-01 15 27184580 27184580 G A GABRA5 Intron 0.69 TCGA-66-2757-01 15 48063935 48063935 G C SEMA6D Missense_Mutation p.V1059L 0.40 tolerated(0.39) benign(0.004) TCGA-66-2757-01 15 50158605 50158605 A G ATP8B4 Missense_Mutation p.I1035T 0.33 deleterious(0.01) benign(0.21) TCGA-66-2757-01 15 56387143 56387143 T A RFX7 Missense_Mutation p.H928L 0.51 tolerated_low_confidence(0.08) benign(0.191) TCGA-66-2757-01 15 76430135 76430135 G A C15orf27 Silent p.L42L 0.42 TCGA-66-2757-01 15 77425758 77425758 C T PEAK1 Silent p.L1222L 0.38 TCGA-66-2757-01 16 11035742 11035742 G A DEXI Silent p.L41L 0.65 TCGA-66-2757-01 16 29884939 29884939 A G SEZ6L2 Missense_Mutation p.L739P 0.46 deleterious(0) probably_damaging(0.998) TCGA-66-2757-01 17 13399673 13399673 C A HS3ST3A1 Missense_Mutation p.K354N 0.58 deleterious(0.01) possibly_damaging(0.706) TCGA-66-2757-01 17 13400066 13400066 C A HS3ST3A1 Silent p.R223R 0.62 TCGA-66-2757-01 17 1673345 1673346 - TC SERPINF1 Splice_Site p.X95_splice 0.40 TCGA-66-2757-01 17 21911036 21911036 G C RP11-744K17.9 RNA 0.22 TCGA-66-2757-01 17 34266340 34266340 G C LYZL6 Missense_Mutation p.I7M 0.31 tolerated(0.1) benign(0.022) TCGA-66-2757-01 17 37420578 37420578 G T FBXL20 Nonsense_Mutation p.C351* 0.43 TCGA-66-2757-01 17 39778625 39778625 C A KRT17 Silent p.L218L 0.05 TCGA-66-2757-01 17 41007479 41007479 C A AOC3 Silent p.T635T 0.25 TCGA-66-2757-01 17 41891393 41891393 C A MPP3 Missense_Mutation p.G414V 0.35 deleterious(0.02) probably_damaging(0.928) TCGA-66-2757-01 17 43107538 43107538 T C DCAKD Missense_Mutation p.Y109C 0.39 deleterious(0) probably_damaging(0.997) TCGA-66-2757-01 17 62018584 62018584 C A SCN4A Missense_Mutation p.E1686D 0.24 deleterious(0.01) benign(0.026) TCGA-66-2757-01 17 74734286 74734286 A G MFSD11 5'UTR 0.60 TCGA-66-2757-01 17 7579355 7579355 A C TP53 Missense_Mutation p.L111R 0.75 deleterious(0) probably_damaging(0.997) TCGA-66-2757-01 17 79414562 79414562 C T RP11-1055B8.7 Missense_Mutation p.P1222S 0.30 benign(0.23) TCGA-66-2757-01 17 80400154 80400154 A C HEXDC Missense_Mutation p.T482P 0.26 deleterious_low_confidence(0) benign(0.25) TCGA-66-2757-01 18 21390438 21390438 C T LAMA3 Missense_Mutation p.S571L 0.34 benign(0.25) TCGA-66-2757-01 18 22806383 22806383 T A ZNF521 Missense_Mutation p.H500L 0.33 deleterious(0) probably_damaging(0.996) TCGA-66-2757-01 18 24435969 24435970 - T AQP4 3'UTR 0.38 TCGA-66-2757-01 18 24435978 24435978 G C AQP4 3'UTR 0.53 TCGA-66-2757-01 18 28989767 28989767 C T DSG4 Intron 0.35 TCGA-66-2757-01 18 3277383 3277383 C T MYL12B Missense_Mutation p.A106V 0.43 deleterious(0.01) possibly_damaging(0.574) TCGA-66-2757-01 18 334876 334876 G C COLEC12 Missense_Mutation p.P561R 0.52 tolerated(0.06) unknown(0) TCGA-66-2757-01 18 65180602 65180602 C T DSEL Nonsense_Mutation p.W425* 0.06 TCGA-66-2757-01 19 10334967 10334967 G A S1PR2 Silent p.I205I 0.11 TCGA-66-2757-01 19 10398376 10398376 G T ICAM4 Missense_Mutation p.G161V 0.40 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-66-2757-01 19 12768935 12768935 C A MAN2B1 Silent p.A417A 0.44 TCGA-66-2757-01 19 16614123 16614123 C G C19orf44 Missense_Mutation p.S336C 0.31 deleterious(0.02) benign(0.005) TCGA-66-2757-01 19 3462841 3462841 C T NFIC 3'UTR 0.42 TCGA-66-2757-01 19 35804240 35804240 T G MAG Silent p.G588G 0.38 TCGA-66-2757-01 19 38937345 38937345 A G RYR1 Missense_Mutation p.Y246C 0.40 probably_damaging(0.999) TCGA-66-2757-01 19 40389698 40389698 C - FCGBP Frame_Shift_Del p.Q2829Rfs*10 0.28 TCGA-66-2757-01 19 41063166 41063166 G T SPTBN4 Missense_Mutation p.A1843S 0.33 tolerated(0.1) possibly_damaging(0.85) TCGA-66-2757-01 19 50195642 50195642 C T CPT1C Missense_Mutation p.R45C 0.29 deleterious(0) probably_damaging(0.998) TCGA-66-2757-01 19 51647859 51647859 C A SIGLEC7 Missense_Mutation p.H210Q 0.44 deleterious(0) benign(0.143) TCGA-66-2757-01 19 55255508 55255508 G A KIR2DL3 Silent p.S212S 0.42 TCGA-66-2757-01 19 56423270 56423270 A G NLRP13 Missense_Mutation p.L638P 0.34 deleterious(0) possibly_damaging(0.642) TCGA-66-2757-01 19 58153213 58153214 TG - ZNF211 Frame_Shift_Del p.C520Wfs*8 0.33 TCGA-66-2757-01 19 58573067 58573067 C A ZNF135 Silent p.V63V 0.43 TCGA-66-2757-01 19 9065840 9065840 G C MUC16 Missense_Mutation p.D7202E 0.44 unknown(0) TCGA-66-2757-01 19 9297382 9297382 G T OR7D2 Missense_Mutation p.A309S 0.42 tolerated_low_confidence(0.22) benign(0.014) TCGA-66-2757-01 19 9968144 9968144 C A OLFM2 Missense_Mutation p.R125S 0.31 tolerated(0.18) benign(0.007) TCGA-66-2757-01 1 10364623 10364623 G A KIF1B Intron 0.48 TCGA-66-2757-01 1 10425162 10425162 G A KIF1B Missense_Mutation p.M1411I 0.41 tolerated(0.07) possibly_damaging(0.758) TCGA-66-2757-01 1 110210760 110210760 G A GSTM2 Nonsense_Mutation p.W8* 0.37 TCGA-66-2757-01 1 11297936 11297936 G A MTOR Silent p.A724A 0.36 TCGA-66-2757-01 1 11898493 11898493 G A CLCN6 Missense_Mutation p.M799I 0.44 tolerated(0.39) possibly_damaging(0.718) TCGA-66-2757-01 1 12955401 12955401 A G PRAMEF10 Missense_Mutation p.V93A 0.67 tolerated(0.07) benign(0.273) TCGA-66-2757-01 1 147380119 147380119 G T GJA8 Nonsense_Mutation p.E13* 0.24 TCGA-66-2757-01 1 156639573 156639573 C G NES Missense_Mutation p.W1469C 0.46 deleterious(0.02) benign(0.086) TCGA-66-2757-01 1 158687756 158687756 C G OR6K3 Missense_Mutation p.R50S 0.36 tolerated(0.06) benign(0.15) TCGA-66-2757-01 1 159166635 159166635 C A CADM3 Intron 0.50 TCGA-66-2757-01 1 160466051 160466051 G T SLAMF6 Missense_Mutation p.S61Y 0.40 tolerated(0.12) probably_damaging(0.964) TCGA-66-2757-01 1 16065173 16065173 G T SLC25A34 Missense_Mutation p.D228Y 0.29 deleterious(0) probably_damaging(0.998) TCGA-66-2757-01 1 162302887 162302887 G C NOS1AP Missense_Mutation p.R142T 0.39 deleterious(0) probably_damaging(0.995) TCGA-66-2757-01 1 169586442 169586442 G A SELP Missense_Mutation p.T102I 0.43 deleterious(0) probably_damaging(0.989) TCGA-66-2757-01 1 175375773 175375773 G C TNR Missense_Mutation p.I26M 0.41 tolerated_low_confidence(0.06) benign(0.027) TCGA-66-2757-01 1 182544550 182544550 C A RNASEL Missense_Mutation p.G735W 0.30 tolerated_low_confidence(0.07) unknown(0) TCGA-66-2757-01 1 183498558 183498558 G C SMG7 Missense_Mutation p.G245R 0.04 tolerated(0.14) benign(0.086) TCGA-66-2757-01 1 193018982 193018982 C A UCHL5 Splice_Site p.X47_splice 0.31 TCGA-66-2757-01 1 209786165 209786165 C G CAMK1G Missense_Mutation p.A459G 0.31 tolerated_low_confidence(0.4) benign(0.033) TCGA-66-2757-01 1 210126103 210126103 T A SYT14 Splice_Site p.X25_splice 0.07 TCGA-66-2757-01 1 220153444 220153444 T G EPRS Missense_Mutation p.S1232R 0.06 deleterious(0) possibly_damaging(0.635) TCGA-66-2757-01 1 223568525 223568525 C A C1orf65 Missense_Mutation p.Q570K 0.29 deleterious(0.04) possibly_damaging(0.592) TCGA-66-2757-01 1 223568703 223568703 C T C1orf65 3'UTR 0.42 TCGA-66-2757-01 1 240939430 240939430 T A RGS7 3'UTR 0.32 TCGA-66-2757-01 1 243504391 243504391 G A SDCCAG8 Silent p.K424K 0.39 TCGA-66-2757-01 1 34076683 34076683 C T CSMD2 Missense_Mutation p.D2061N 0.48 deleterious(0) probably_damaging(0.985) TCGA-66-2757-01 1 53555558 53555558 G C SLC1A7 Silent p.A425A 0.38 TCGA-66-2757-01 1 75037105 75037105 C A C1orf173 Missense_Mutation p.G1430V 0.25 deleterious(0.05) possibly_damaging(0.776) TCGA-66-2757-01 1 78268972 78268972 A G FAM73A Missense_Mutation p.S131G 0.05 deleterious(0.02) possibly_damaging(0.699) TCGA-66-2757-01 20 11903423 11903423 T C BTBD3 Silent p.C226C 0.36 TCGA-66-2757-01 20 11903424 11903424 G T BTBD3 Missense_Mutation p.V227L 0.36 tolerated(0.56) benign(0.005) TCGA-66-2757-01 20 1638397 1638397 T C SIRPG 5'UTR 0.32 TCGA-66-2757-01 20 33637788 33637788 C A TRPC4AP Missense_Mutation p.V180F 0.26 tolerated(0.08) probably_damaging(0.959) TCGA-66-2757-01 20 42815135 42815135 C A JPH2 Missense_Mutation p.G71W 0.27 deleterious(0) probably_damaging(1) TCGA-66-2757-01 20 43438895 43438895 G T RIMS4 Missense_Mutation p.S6R 0.55 tolerated_low_confidence(0.14) benign(0.023) TCGA-66-2757-01 20 62201822 62201822 C T HELZ2 Intron 0.29 TCGA-66-2757-01 20 8709735 8709735 G T PLCB1 Missense_Mutation p.G601V 0.34 deleterious(0) probably_damaging(1) TCGA-66-2757-01 21 10914395 10914395 C A TPTE Missense_Mutation p.V442F 0.10 deleterious(0.02) possibly_damaging(0.678) TCGA-66-2757-01 21 17197357 17197357 G A USP25 Silent p.T427T 0.42 TCGA-66-2757-01 21 43645932 43645932 G T ABCG1 Missense_Mutation p.R65L 0.90 deleterious(0.02) benign(0.442) TCGA-66-2757-01 22 16256638 16256638 C A POTEH 3'UTR 0.12 TCGA-66-2757-01 22 16267027 16267027 G T POTEH Silent p.A474A 0.12 TCGA-66-2757-01 22 17589252 17589252 G C IL17RA Missense_Mutation p.W381C 0.20 deleterious(0) probably_damaging(1) TCGA-66-2757-01 22 21329007 21329007 G C AIFM3 Missense_Mutation p.V208L 0.44 tolerated(0.06) benign(0.02) TCGA-66-2757-01 22 21345987 21345987 A G LZTR1 Missense_Mutation p.T288A 0.56 deleterious(0.02) possibly_damaging(0.842) TCGA-66-2757-01 22 22453531 22453531 C A IGLV8-61 Missense_Mutation p.L93I 0.05 tolerated(0.07) benign(0.261) TCGA-66-2757-01 22 31022566 31022566 C G TCN2 3'UTR 0.65 TCGA-66-2757-01 22 32586756 32586756 G T RFPL2 3'UTR 0.07 TCGA-66-2757-01 2 128408686 128408686 G A GPR17 Missense_Mutation p.S154N 0.38 deleterious(0) probably_damaging(0.998) TCGA-66-2757-01 2 131688620 131688620 C A ARHGEF4 Missense_Mutation p.F30L 0.42 tolerated_low_confidence(0.12) benign(0) TCGA-66-2757-01 2 138163301 138163301 C G THSD7B Silent p.T873T 0.22 TCGA-66-2757-01 2 152529031 152529031 G - NEB Frame_Shift_Del p.P1384Lfs*36 0.39 TCGA-66-2757-01 2 165994574 165994574 C T SCN3A Missense_Mutation p.V736M 0.33 tolerated(0.24) benign(0.003) TCGA-66-2757-01 2 172337766 172337766 T - DCAF17 3'UTR 0.35 TCGA-66-2757-01 2 175624353 175624353 C A CHRNA1 Missense_Mutation p.V18F 0.47 tolerated(0.27) benign(0.298) TCGA-66-2757-01 2 177036984 177036984 C G HOXD3 Silent p.P427P 0.36 TCGA-66-2757-01 2 179604027 179604027 G T TTN Missense_Mutation p.P4645T 0.40 TCGA-66-2757-01 2 179621084 179621084 T A TTN Nonsense_Mutation p.K3707* 0.35 TCGA-66-2757-01 2 211159113 211159113 G T MYL1 Missense_Mutation p.Q112K 0.42 tolerated(0.8) benign(0.206) TCGA-66-2757-01 2 211447371 211447371 G T CPS1 Missense_Mutation p.G193C 0.28 deleterious(0) probably_damaging(0.999) TCGA-66-2757-01 2 216257885 216257885 C T FN1 Missense_Mutation p.D1280N 0.25 deleterious(0.03) probably_damaging(0.989) TCGA-66-2757-01 2 228497912 228497912 G C C2orf83 5'Flank 0.48 TCGA-66-2757-01 2 228881925 228881925 G C SPHKAP Missense_Mutation p.S1215R 0.43 deleterious(0.03) benign(0.046) TCGA-66-2757-01 2 230643658 230643658 G C TRIP12 Missense_Mutation p.Q1640E 0.05 tolerated(0.06) probably_damaging(0.981) TCGA-66-2757-01 2 241631533 241631533 G T AQP12A Missense_Mutation p.G56W 0.67 deleterious(0) probably_damaging(0.999) TCGA-66-2757-01 2 241631534 241631534 G T AQP12A Missense_Mutation p.G56V 0.69 deleterious(0) probably_damaging(0.993) TCGA-66-2757-01 2 27607803 27607803 C A PPM1G Missense_Mutation p.G188W 0.38 deleterious(0) probably_damaging(0.965) TCGA-66-2757-01 2 29296801 29296801 G T C2orf71 Missense_Mutation p.H109Q 0.41 deleterious(0.01) possibly_damaging(0.595) TCGA-66-2757-01 2 3743381 3743381 G T ALLC Missense_Mutation p.A196S 0.39 tolerated(0.14) benign(0) TCGA-66-2757-01 2 48026011 48026011 G A MSH6 Missense_Mutation p.A297T 0.38 tolerated(0.66) benign(0.006) TCGA-66-2757-01 2 48915454 48915454 A G LHCGR Silent p.S494S 0.39 TCGA-66-2757-01 2 55253585 55253585 C G RTN4 Silent p.L550L 0.38 TCGA-66-2757-01 2 77746748 77746748 C A LRRTM4 Missense_Mutation p.G83C 0.34 deleterious(0) probably_damaging(0.997) TCGA-66-2757-01 2 79365136 79365136 G T REG1P RNA 0.57 TCGA-66-2757-01 2 80530767 80530767 C - LRRTM1 Frame_Shift_Del p.A60Rfs*29 0.34 TCGA-66-2757-01 2 86378604 86378604 G C IMMT Missense_Mutation p.A406G 0.06 deleterious(0.02) possibly_damaging(0.617) TCGA-66-2757-01 2 88472641 88472641 G A THNSL2 5'UTR 0.40 TCGA-66-2757-01 2 89278203 89278203 C A IGKV3-7 Missense_Mutation p.R44S 0.37 deleterious(0.01) benign(0.15) TCGA-66-2757-01 2 96260013 96260013 G A TRIM43 Missense_Mutation p.S81N 0.32 tolerated(0.15) benign(0.105) TCGA-66-2757-01 3 100472662 100472662 C A ABI3BP Splice_Site p.X943_splice 0.30 TCGA-66-2757-01 3 100962934 100962934 C A IMPG2 Missense_Mutation p.M747I 0.05 tolerated(0.55) benign(0) TCGA-66-2757-01 3 108224623 108224623 C A MYH15 Missense_Mutation p.V68L 0.24 tolerated(0.09) benign(0.201) TCGA-66-2757-01 3 108474753 108474753 C A RETNLB Splice_Site p.X70_splice 0.28 TCGA-66-2757-01 3 11468349 11468349 A T ATG7 Missense_Mutation p.L676F 0.54 deleterious(0) probably_damaging(0.98) TCGA-66-2757-01 3 125313525 125313525 G T OSBPL11 Missense_Mutation p.S40R 0.56 tolerated_low_confidence(0.13) benign(0) TCGA-66-2757-01 3 128205181 128205181 G C GATA2 Missense_Mutation p.P87R 0.25 deleterious(0) probably_damaging(0.994) TCGA-66-2757-01 3 129238477 129238477 G C IFT122 Missense_Mutation p.D1231H 0.15 tolerated(0.13) benign(0.135) TCGA-66-2757-01 3 139894792 139894792 G T CLSTN2 Splice_Site p.X37_splice 0.27 TCGA-66-2757-01 3 143691762 143691762 C T C3orf58 Silent p.N196N 0.70 TCGA-66-2757-01 3 154024045 154024045 C A DHX36 Missense_Mutation p.G285C 0.21 deleterious(0) probably_damaging(0.998) TCGA-66-2757-01 3 15492805 15492805 C A COLQ 3'UTR 0.77 TCGA-66-2757-01 3 187416661 187416661 C A RTP2 Silent p.T101T 0.29 TCGA-66-2757-01 3 38357879 38357879 A G SLC22A14 Missense_Mutation p.I533V 0.67 tolerated(0.39) benign(0.038) TCGA-66-2757-01 3 48450817 48450817 C G PLXNB1 Missense_Mutation p.D2003H 0.72 deleterious(0) probably_damaging(0.996) TCGA-66-2757-01 3 97467485 97467485 C G EPHA6 Missense_Mutation p.S1111R 0.23 deleterious(0.01) possibly_damaging(0.842) TCGA-66-2757-01 4 22749311 22749311 G C GBA3 Missense_Mutation p.V227L 0.03 deleterious(0.03) benign(0.005) TCGA-66-2757-01 4 25256684 25256684 T C PI4K2B Intron 0.34 TCGA-66-2757-01 4 40440165 40440165 T C RBM47 Missense_Mutation p.Y249C 0.35 deleterious(0.01) benign(0.12) TCGA-66-2757-01 4 44177019 44177019 G T KCTD8 Missense_Mutation p.P404T 0.38 tolerated(0.25) probably_damaging(0.992) TCGA-66-2757-01 4 46388199 46388199 G T GABRA2 Missense_Mutation p.L27M 0.33 tolerated_low_confidence(0.13) benign(0.252) TCGA-66-2757-01 4 55962494 55962494 C A KDR Missense_Mutation p.S877I 0.35 deleterious(0) possibly_damaging(0.903) TCGA-66-2757-01 4 91229477 91229477 G T CCSER1 Silent p.R14R 0.74 TCGA-66-2757-01 4 94690580 94690580 C A GRID2 Silent p.G860G 0.63 TCGA-66-2757-01 5 127680126 127680126 G C FBN2 Missense_Mutation p.C1098W 0.69 deleterious(0) probably_damaging(1) TCGA-66-2757-01 5 140167445 140167445 G T PCDHA1 Missense_Mutation p.D524Y 0.83 deleterious_low_confidence(0) probably_damaging(1) TCGA-66-2757-01 5 140558611 140558611 C A PCDHB8 Nonsense_Mutation p.C332* 0.05 TCGA-66-2757-01 5 140725487 140725487 G A PCDHGA3 Silent p.A629A 0.51 TCGA-66-2757-01 5 140741626 140741626 C A PCDHGB2 Missense_Mutation p.L642M 0.87 deleterious(0) probably_damaging(0.973) TCGA-66-2757-01 5 1463865 1463865 T C LPCAT1 Silent p.A502A 0.18 TCGA-66-2757-01 5 147821650 147821650 G T FBXO38 Silent p.V1094V 0.08 TCGA-66-2757-01 5 148207106 148207106 G A ADRB2 Missense_Mutation p.G238S 0.63 tolerated(0.27) benign(0.406) TCGA-66-2757-01 5 149465950 149465950 G T CSF1R Missense_Mutation p.A14D 0.75 deleterious(0.01) benign(0.288) TCGA-66-2757-01 5 156947033 156947033 C T ADAM19 Silent p.L138L 0.08 TCGA-66-2757-01 5 170883546 170883546 G T FGF18 Missense_Mutation p.D121Y 0.71 deleterious(0) probably_damaging(0.968) TCGA-66-2757-01 5 175110623 175110623 G T HRH2 Silent p.L129L 0.69 TCGA-66-2757-01 5 178392042 178392042 G T ZNF454 Nonsense_Mutation p.E213* 0.61 TCGA-66-2757-01 5 180477308 180477308 G A BTNL9 Silent p.V225V 0.66 TCGA-66-2757-01 5 19747261 19747261 C A CDH18 Missense_Mutation p.D105Y 0.31 deleterious(0) probably_damaging(0.963) TCGA-66-2757-01 5 19747262 19747262 G C CDH18 Missense_Mutation p.D104E 0.31 deleterious(0.01) benign(0.177) TCGA-66-2757-01 5 24593426 24593426 C A CDH10 Missense_Mutation p.W58C 0.22 deleterious(0) probably_damaging(0.96) TCGA-66-2757-01 5 44305296 44305296 T A FGF10 Splice_Site p.X144_splice 0.29 TCGA-66-2757-01 6 102124587 102124587 G A GRIK2 Missense_Mutation p.A211T 0.34 tolerated(0.31) benign(0.012) TCGA-66-2757-01 6 127765251 127765251 G T KIAA0408 3'UTR 0.25 TCGA-66-2757-01 6 127775124 127775124 C T KIAA0408 Translation_Start_Site p.M1? 0.49 deleterious(0) possibly_damaging(0.805) TCGA-66-2757-01 6 150004707 150004707 T C LATS1 Silent p.P506P 0.30 TCGA-66-2757-01 6 152451874 152451874 C T SYNE1 Missense_Mutation p.V8712I 0.13 benign(0.07) TCGA-66-2757-01 6 152737884 152737884 A G SYNE1 Silent p.S1896S 0.49 TCGA-66-2757-01 6 161969928 161969928 C A PARK2 Missense_Mutation p.Q347H 0.52 tolerated(0.12) possibly_damaging(0.663) TCGA-66-2757-01 6 30867086 30867086 G T DDR1 3'UTR 0.36 TCGA-66-2757-01 6 32810867 32810867 C A PSMB8 Splice_Site p.X50_splice 0.28 TCGA-66-2757-01 6 36359505 36359505 A - PXT1 3'UTR 0.44 TCGA-66-2757-01 6 37614074 37614074 C T MDGA1 Silent p.L708L 0.32 TCGA-66-2757-01 6 40400339 40400339 T G LRFN2 Missense_Mutation p.M172L 0.04 tolerated(0.13) probably_damaging(0.997) TCGA-66-2757-01 6 40400484 40400484 C A LRFN2 Silent p.L123L 0.30 TCGA-66-2757-01 6 43020080 43020080 G T CUL7 Missense_Mutation p.S201R 0.05 deleterious(0) probably_damaging(0.996) TCGA-66-2757-01 6 46803046 46803046 G T MEP1A Missense_Mutation p.G615V 0.67 tolerated(0.15) possibly_damaging(0.774) TCGA-66-2757-01 6 52051192 52051192 C T IL17A 5'UTR 0.41 TCGA-66-2757-01 6 52658956 52658956 T G GSTA1 Missense_Mutation p.K127N 0.02 deleterious(0.03) possibly_damaging(0.466) TCGA-66-2757-01 6 83075380 83075380 C T TPBG Silent p.P234P 0.26 TCGA-66-2757-01 6 84895046 84895046 C T KIAA1009 Missense_Mutation p.A508T 0.26 deleterious(0.04) benign(0.077) TCGA-66-2757-01 6 9933028 9933028 C A OFCC1 Missense_Mutation p.R77S 0.31 tolerated(0.07) benign(0.108) TCGA-66-2757-01 7 100676069 100676069 C A MUC17 Missense_Mutation p.P458T 0.45 benign(0.014) TCGA-66-2757-01 7 100839548 100839548 G T MOGAT3 Missense_Mutation p.P264H 0.36 deleterious(0) probably_damaging(0.992) TCGA-66-2757-01 7 105893560 105893560 T C NAMPT Missense_Mutation p.K423R 0.36 deleterious(0) probably_damaging(1) TCGA-66-2757-01 7 116411551 116411551 G C MET Splice_Site p.X929_splice 0.35 TCGA-66-2757-01 7 123296224 123296224 G T LMOD2 Silent p.L69L 0.50 TCGA-66-2757-01 7 135418683 135418685 TGC - FAM180A 3'UTR 0.29 TCGA-66-2757-01 7 141765143 141765143 A T MGAM Missense_Mutation p.Q1498L 0.31 tolerated(0.1) benign(0.186) TCGA-66-2757-01 7 143747699 143747699 G C OR2A5 Missense_Mutation p.D69H 0.42 deleterious(0) probably_damaging(1) TCGA-66-2757-01 7 143884321 143884321 T C ARHGEF35 Missense_Mutation p.R386G 0.36 tolerated(0.62) benign(0) TCGA-66-2757-01 7 149418508 149418508 G T KRBA1 Silent p.L116L 0.20 TCGA-66-2757-01 7 151711789 151711789 A G GALNTL5 Missense_Mutation p.K363E 0.36 deleterious(0) possibly_damaging(0.713) TCGA-66-2757-01 7 23296615 23296615 G C GPNMB Missense_Mutation p.D158H 0.60 deleterious(0) probably_damaging(0.987) TCGA-66-2757-01 7 27147774 27147774 G A HOXA3 Silent p.P364P 0.71 TCGA-66-2757-01 7 40220565 40220565 A G SUGCT Silent p.P47P 0.07 TCGA-66-2757-01 7 43484986 43484986 G T HECW1 Nonsense_Mutation p.E739* 0.08 TCGA-66-2757-01 7 45753622 45753622 A C ADCY1 3'UTR 0.58 TCGA-66-2757-01 7 48684351 48684351 G A ABCA13 Splice_Site p.X5027_splice 0.05 TCGA-66-2757-01 7 57187718 57187718 T A ZNF479 Missense_Mutation p.E468D 0.06 deleterious(0.04) benign(0.376) TCGA-66-2757-01 7 73008378 73008378 G T MLXIPL Intron 0.33 TCGA-66-2757-01 7 98506430 98506430 G A TRRAP Missense_Mutation p.V399I 0.39 benign(0.003) TCGA-66-2757-01 8 12947973 12947973 C T DLC1 Missense_Mutation p.E1288K 0.83 deleterious(0.02) benign(0.163) TCGA-66-2757-01 8 139838952 139838952 C T COL22A1 Silent p.R306R 0.81 TCGA-66-2757-01 8 21856802 21856802 C T XPO7 Missense_Mutation p.H877Y 0.70 tolerated(0.23) benign(0.017) TCGA-66-2757-01 8 22084393 22084393 C A PHYHIP Missense_Mutation p.W104L 0.86 tolerated(0.08) possibly_damaging(0.746) TCGA-66-2757-01 8 28420380 28420380 C A FZD3 Missense_Mutation p.T618K 0.75 tolerated_low_confidence(0.43) benign(0.057) TCGA-66-2757-01 8 35606132 35606132 G T UNC5D Missense_Mutation p.L618F 0.50 deleterious(0.02) possibly_damaging(0.88) TCGA-66-2757-01 8 39792694 39792694 C G IDO2 5'UTR 0.25 TCGA-66-2757-01 9 104125029 104125029 A G BAAT Missense_Mutation p.I313T 0.47 deleterious(0.02) possibly_damaging(0.551) TCGA-66-2757-01 9 115818962 115818962 C G ZFP37 Missense_Mutation p.V3L 0.43 tolerated_low_confidence(0.09) benign(0.024) TCGA-66-2757-01 9 127572392 127572392 G A OLFML2A Missense_Mutation p.D554N 0.38 tolerated(0.86) possibly_damaging(0.822) TCGA-66-2757-01 9 12775704 12775704 C A LURAP1L 5'UTR 0.34 TCGA-66-2757-01 9 132984952 132984952 G A NCS1 Missense_Mutation p.D111N 0.39 tolerated(0.22) probably_damaging(1) TCGA-66-2757-01 9 138669314 138669314 C G KCNT1 Missense_Mutation p.S827C 0.41 deleterious(0) possibly_damaging(0.75) TCGA-66-2757-01 9 138838190 138838190 C T UBAC1 Missense_Mutation p.V157M 0.49 tolerated(0.07) possibly_damaging(0.495) TCGA-66-2757-01 9 139327487 139327487 C G INPP5E Missense_Mutation p.Q400H 0.42 tolerated(0.17) benign(0.001) TCGA-66-2757-01 9 139366443 139366443 C T SEC16A Missense_Mutation p.E1230K 0.53 deleterious(0) benign(0.356) TCGA-66-2757-01 9 21239963 21239963 G T IFNA14 5'UTR 0.49 TCGA-66-2757-01 9 79318347 79318347 G T PRUNE2 Missense_Mutation p.P2728T 0.54 tolerated(0.06) benign(0.266) TCGA-66-2757-01 9 84562544 84562544 G T RP11-383M4.6 Intron 0.26 TCGA-66-2757-01 X 107037579 107037579 G T NCBP2L Missense_Mutation p.M43I 0.47 tolerated(0.13) benign(0.004) TCGA-66-2757-01 X 111698926 111698926 C A ZCCHC16 3'UTR 0.38 TCGA-66-2757-01 X 114082670 114082670 C T HTR2C Missense_Mutation p.R152W 0.33 deleterious(0) probably_damaging(1) TCGA-66-2757-01 X 118699258 118699258 C A CXorf56 Missense_Mutation p.D21Y 0.29 tolerated(0.09) probably_damaging(0.952) TCGA-66-2757-01 X 119070583 119070583 G C NKAP Missense_Mutation p.T177S 0.40 tolerated(1) unknown(0) TCGA-66-2757-01 X 120009203 120009203 A G CT47B1 Silent p.L108L 0.36 TCGA-66-2757-01 X 122754763 122754763 C A THOC2 Missense_Mutation p.V1424L 0.39 tolerated(0.11) benign(0.01) TCGA-66-2757-01 X 122757771 122757771 A T THOC2 Missense_Mutation p.L1124M 0.41 deleterious(0) probably_damaging(0.999) TCGA-66-2757-01 X 128927642 128927642 G A SASH3 Missense_Mutation p.G326D 0.38 tolerated(0.27) probably_damaging(0.998) TCGA-66-2757-01 X 134481156 134481156 A G ZNF449 Missense_Mutation p.Y38C 0.29 deleterious(0) probably_damaging(0.999) TCGA-66-2757-01 X 135429072 135429072 G T GPR112 Missense_Mutation p.Q1069H 0.37 deleterious(0) possibly_damaging(0.862) TCGA-66-2757-01 X 135618165 135618165 T C VGLL1 5'UTR 0.40 TCGA-66-2757-01 X 138679676 138679676 C G MCF2 Silent p.L742L 0.30 TCGA-66-2757-01 X 138679723 138679723 C A MCF2 Missense_Mutation p.D727Y 0.35 deleterious(0) probably_damaging(0.943) TCGA-66-2757-01 X 138811090 138811090 G T ATP11C 3'UTR 0.33 TCGA-66-2757-01 X 151303347 151303347 G T MAGEA10 Missense_Mutation p.A249E 0.40 deleterious(0.01) benign(0.36) TCGA-66-2757-01 X 151424346 151424346 A T GABRA3 Missense_Mutation p.F152Y 0.41 tolerated(0.18) possibly_damaging(0.791) TCGA-66-2757-01 X 151560708 151560708 G A GABRA3 Intron 0.40 TCGA-66-2757-01 X 151818344 151818344 T A GABRQ Splice_Site p.X250_splice 0.36 TCGA-66-2757-01 X 151899637 151899637 A G MAGEA12 3'UTR 0.33 TCGA-66-2757-01 X 151899673 151899673 G T MAGEA12 3'UTR 0.25 TCGA-66-2757-01 X 152159576 152159576 C - PNMA5 Frame_Shift_Del p.W189Cfs*34 0.34 TCGA-66-2757-01 X 153001941 153001941 G A ABCD1 Missense_Mutation p.R456H 0.38 tolerated(0.36) benign(0.001) TCGA-66-2757-01 X 153582818 153582818 G A FLNA Silent p.L1783L 0.47 TCGA-66-2757-01 X 153697756 153697756 C A PLXNA3 Silent p.L1543L 0.42 TCGA-66-2757-01 X 153697757 153697757 C A PLXNA3 Missense_Mutation p.Q1544K 0.41 deleterious(0.02) benign(0.345) TCGA-66-2757-01 X 154250707 154250707 C A F8 Missense_Mutation p.G41C 0.39 deleterious(0.03) possibly_damaging(0.622) TCGA-66-2757-01 X 18259411 18259411 C A SCML2 Missense_Mutation p.C688F 0.44 deleterious(0) probably_damaging(0.936) TCGA-66-2757-01 X 23957619 23957619 T G CXorf58 3'UTR 0.36 TCGA-66-2757-01 X 24741271 24741271 G T POLA1 Splice_Site p.X357_splice 0.40 TCGA-66-2757-01 X 29973704 29973704 C A IL1RAPL1 Missense_Mutation p.R620S 0.40 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-66-2757-01 X 30236736 30236736 G C MAGEB2 Missense_Mutation p.E13D 0.30 deleterious(0) probably_damaging(0.998) TCGA-66-2757-01 X 30254995 30254995 C A MAGEB3 Silent p.V318V 0.32 TCGA-66-2757-01 X 34148685 34148685 C A FAM47A Nonsense_Mutation p.E571* 0.47 TCGA-66-2757-01 X 48123281 48123281 C A SSX1 Missense_Mutation p.P132Q 0.41 deleterious(0) benign(0.221) TCGA-66-2757-01 X 49104772 49104772 G T CCDC22 Splice_Site p.X404_splice 0.35 TCGA-66-2757-01 X 54265524 54265524 G A WNK3 Silent p.S1220S 0.30 TCGA-66-2757-01 X 54581038 54581038 G A GNL3L Silent p.T453T 0.39 TCGA-66-2757-01 X 55514393 55514393 G A USP51 Missense_Mutation p.S327L 0.04 tolerated(0.29) benign(0.003) TCGA-66-2757-01 X 70524083 70524083 T C ITGB1BP2 Missense_Mutation p.V229A 0.25 deleterious(0.01) possibly_damaging(0.61) TCGA-66-2757-01 X 73812559 73812559 T A RLIM Missense_Mutation p.E197D 0.38 tolerated(0.06) unknown(0) TCGA-66-2757-01 X 77224391 77224391 G - PGAM4 Frame_Shift_Del p.Q249Rfs*45 0.35 TCGA-66-2757-01 X 78010290 78010290 G - LPAR4 Intron 0.24 TCGA-66-2757-01 X 78427571 78427571 A T GPR174 3'UTR 0.48 TCGA-66-2758-01 10 104140418 104140418 A G GBF1 Silent p.E1715E 0.26 TCGA-66-2758-01 10 106163575 106163575 G C CCDC147 Missense_Mutation p.V710L 0.30 tolerated(0.09) benign(0.021) TCGA-66-2758-01 10 115486075 115486075 G C CASP7 Silent p.G221G 0.18 TCGA-66-2758-01 10 124096123 124096123 G C BTBD16 Missense_Mutation p.G460R 0.17 deleterious(0) probably_damaging(0.977) TCGA-66-2758-01 10 33208813 33208813 C T ITGB1 Missense_Mutation p.R490K 0.04 tolerated(0.2) benign(0.029) TCGA-66-2758-01 10 52587900 52587900 T A A1CF Missense_Mutation p.I262F 0.08 tolerated(1) possibly_damaging(0.462) TCGA-66-2758-01 10 63191022 63191022 C G TMEM26 Missense_Mutation p.L113F 0.16 tolerated(0.34) possibly_damaging(0.682) TCGA-66-2758-01 10 63816878 63816878 G A ARID5B Silent p.V283V 0.47 TCGA-66-2758-01 10 69925552 69925552 G T MYPN Missense_Mutation p.S526I 0.63 deleterious(0) probably_damaging(0.982) TCGA-66-2758-01 10 73765698 73765698 T C CHST3 Missense_Mutation p.I33T 0.48 tolerated_low_confidence(0.06) benign(0.033) TCGA-66-2758-01 10 73765715 73765715 G T CHST3 Nonsense_Mutation p.E39* 0.51 TCGA-66-2758-01 10 81317293 81317293 G A SFTPA2 Missense_Mutation p.S140F 0.50 deleterious(0.01) possibly_damaging(0.826) TCGA-66-2758-01 11 100126572 100126572 G A CNTN5 Missense_Mutation p.D696N 0.54 deleterious(0.04) probably_damaging(0.981) TCGA-66-2758-01 11 101771167 101771167 G T ANGPTL5 Missense_Mutation p.L219I 0.49 deleterious(0.01) possibly_damaging(0.641) TCGA-66-2758-01 11 118769687 118769687 C A BCL9L Missense_Mutation p.V1313L 0.29 probably_damaging(0.985) TCGA-66-2758-01 11 1718688 1718688 C A KRTAP5-6 Silent p.G71G 0.31 TCGA-66-2758-01 11 30928170 30928170 C T DCDC1 Missense_Mutation p.G1341R 0.25 tolerated(0.21) probably_damaging(0.979) TCGA-66-2758-01 11 45246120 45246120 G A PRDM11 Nonsense_Mutation p.W365* 0.34 TCGA-66-2758-01 11 5068595 5068595 C A OR52J3 Silent p.L280L 0.24 TCGA-66-2758-01 11 51411845 51411845 A C OR4A5 Missense_Mutation p.L184R 0.36 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-66-2758-01 11 5153381 5153381 G T OR52A5 Silent p.L164L 0.24 TCGA-66-2758-01 11 534285 534285 C A HRAS Missense_Mutation p.G13V 0.26 deleterious(0.02) probably_damaging(0.989) TCGA-66-2758-01 11 55595463 55595463 T C OR5L2 Missense_Mutation p.Y257H 0.23 deleterious(0) benign(0.013) TCGA-66-2758-01 11 55595507 55595507 C A OR5L2 Missense_Mutation p.D271E 0.20 tolerated(0.08) possibly_damaging(0.676) TCGA-66-2758-01 11 56043883 56043883 C A OR5T1 Missense_Mutation p.L257I 0.17 deleterious(0.01) probably_damaging(0.973) TCGA-66-2758-01 11 5686040 5686040 C G TRIM5 Nonstop_Mutation p.*494Sext*50 0.23 TCGA-66-2758-01 11 60271261 60271261 G C MS4A12 Missense_Mutation p.G187R 0.25 deleterious(0.03) possibly_damaging(0.617) TCGA-66-2758-01 11 6479499 6479499 C G TRIM3 Missense_Mutation p.Q53H 0.29 tolerated(0.6) probably_damaging(0.917) TCGA-66-2758-01 11 6640070 6640070 G T TPP1 Missense_Mutation p.Q56K 0.31 tolerated(0.22) benign(0.017) TCGA-66-2758-01 11 67786655 67786655 G A ALDH3B1 Silent p.L136L 0.38 TCGA-66-2758-01 11 71511553 71511553 C G FAM86C1 3'UTR 0.31 TCGA-66-2758-01 11 73105576 73105576 C G RELT Silent p.L281L 0.59 TCGA-66-2758-01 11 76076958 76076958 G A PRKRIR Nonsense_Mutation p.Q50* 0.21 TCGA-66-2758-01 11 8728747 8728748 CG - ST5 Frame_Shift_Del p.R819Wfs*38 0.24 TCGA-66-2758-01 12 100169348 100169348 C A ANKS1B Missense_Mutation p.E313D 0.19 tolerated(0.64) benign(0) TCGA-66-2758-01 12 101295607 101295607 T A ANO4 Missense_Mutation p.V15D 0.20 tolerated_low_confidence(0.63) benign(0.035) TCGA-66-2758-01 12 101693755 101693755 C G UTP20 Missense_Mutation p.L531V 0.41 tolerated(0.22) benign(0.175) TCGA-66-2758-01 12 101870684 101870684 T A SPIC Translation_Start_Site p.M1? 0.20 deleterious(0) probably_damaging(0.986) TCGA-66-2758-01 12 109835579 109835579 A C MYO1H Silent p.R162R 0.19 TCGA-66-2758-01 12 110480255 110480255 C T C12orf76 Silent p.G103G 0.24 TCGA-66-2758-01 12 11339133 11339133 A G TAS2R42 Silent p.S137S 0.18 TCGA-66-2758-01 12 119631823 119631823 A C HSPB8 3'UTR 0.31 TCGA-66-2758-01 12 121670841 121670841 G C P2RX4 Missense_Mutation p.K378N 0.42 tolerated(0.08) probably_damaging(0.997) TCGA-66-2758-01 12 122079130 122079131 - C ORAI1 Frame_Shift_Ins p.H167Pfs*2 0.44 TCGA-66-2758-01 12 130831075 130831075 G A PIWIL1 Silent p.K159K 0.62 TCGA-66-2758-01 12 19496351 19496351 G C PLEKHA5 Missense_Mutation p.R882T 0.15 deleterious(0) benign(0.05) TCGA-66-2758-01 12 21196375 21196375 T A SLCO1B7 Missense_Mutation p.L232M 0.26 deleterious(0) probably_damaging(0.985) TCGA-66-2758-01 12 21331541 21331541 G C SLCO1B1 Missense_Mutation p.W171C 0.08 deleterious(0) probably_damaging(1) TCGA-66-2758-01 12 22070004 22070004 G A ABCC9 Missense_Mutation p.T147I 0.45 tolerated(0.1) possibly_damaging(0.578) TCGA-66-2758-01 12 49578730 49578730 T A TUBA1A 3'UTR 0.11 TCGA-66-2758-01 12 5020854 5020854 A T KCNA1 Missense_Mutation p.R104W 0.22 deleterious(0) probably_damaging(0.999) TCGA-66-2758-01 12 51252702 51252702 C T TMPRSS12 Missense_Mutation p.A173V 0.29 deleterious(0) probably_damaging(0.99) TCGA-66-2758-01 12 52794402 52794402 A G KRT82 Missense_Mutation p.V229A 0.44 deleterious(0.04) possibly_damaging(0.764) TCGA-66-2758-01 12 53448142 53448142 G C TENC1 Missense_Mutation p.A157P 0.37 tolerated(1) possibly_damaging(0.762) TCGA-66-2758-01 12 57390016 57390016 G A GPR182 Silent p.K341K 0.19 TCGA-66-2758-01 12 57648538 57648538 C G R3HDM2 3'UTR 0.21 TCGA-66-2758-01 12 57910367 57910367 G T MARS 3'UTR 0.21 TCGA-66-2758-01 12 64521760 64521760 C G SRGAP1 Missense_Mutation p.P887R 0.41 tolerated(0.26) benign(0.041) TCGA-66-2758-01 12 863246 863246 T A WNK1 Missense_Mutation p.V172E 0.56 tolerated(1) unknown(0) TCGA-66-2758-01 12 94975638 94975638 C A TMCC3 Missense_Mutation p.G252V 0.21 tolerated(0.07) benign(0.011) TCGA-66-2758-01 13 21751154 21751154 G C MRP63 Missense_Mutation p.Q33H 0.06 tolerated(0.16) possibly_damaging(0.519) TCGA-66-2758-01 13 26621140 26621140 G T SHISA2 Silent p.S133S 0.48 TCGA-66-2758-01 13 41341022 41341022 T G MRPS31 Missense_Mutation p.L100F 0.46 deleterious(0.04) benign(0.126) TCGA-66-2758-01 13 49796434 49796434 C T MLNR Missense_Mutation p.A387V 0.55 tolerated(0.27) benign(0.002) TCGA-66-2758-01 13 77724913 77724913 T C MYCBP2 Missense_Mutation p.M2325V 0.58 benign(0.001) TCGA-66-2758-01 13 88329946 88329946 G A SLITRK5 Missense_Mutation p.R768Q 0.25 deleterious(0.02) possibly_damaging(0.801) TCGA-66-2758-01 13 98086847 98086847 C T RAP2A Silent p.R41R 0.21 TCGA-66-2758-01 13 99578088 99578088 C T DOCK9 Intron 0.42 TCGA-66-2758-01 14 20864868 20864868 A T TEP1 Missense_Mutation p.M524K 0.28 deleterious(0) possibly_damaging(0.784) TCGA-66-2758-01 14 21542484 21542484 A T ARHGEF40 Missense_Mutation p.S199C 0.32 deleterious(0.02) possibly_damaging(0.514) TCGA-66-2758-01 14 21883988 21883988 C T CHD8 Missense_Mutation p.E599K 0.27 tolerated(0.09) benign(0.014) TCGA-66-2758-01 14 23868085 23868085 G C MYH6 Missense_Mutation p.I581M 0.24 deleterious(0.04) benign(0.016) TCGA-66-2758-01 14 35482666 35482666 G C SRP54 Missense_Mutation p.D251H 0.23 deleterious(0) probably_damaging(0.987) TCGA-66-2758-01 14 50089211 50089211 G C MGAT2 Missense_Mutation p.E409Q 0.05 tolerated(0.25) benign(0.043) TCGA-66-2758-01 14 51227052 51227052 T A NIN Missense_Mutation p.D641V 0.27 deleterious(0.04) possibly_damaging(0.826) TCGA-66-2758-01 14 68059354 68059354 G A PIGH Nonsense_Mutation p.Q158* 0.32 TCGA-66-2758-01 14 75514890 75514890 G T MLH3 Missense_Mutation p.S490Y 0.54 tolerated(0.14) benign(0.014) TCGA-66-2758-01 14 77945036 77945036 C G ISM2 Missense_Mutation p.W332C 0.27 deleterious(0) probably_damaging(0.971) TCGA-66-2758-01 14 93118071 93118071 C T RIN3 Missense_Mutation p.S226L 0.09 deleterious(0) unknown(0) TCGA-66-2758-01 14 96730239 96730239 A G BDKRB1 Missense_Mutation p.I74V 0.57 deleterious(0.05) possibly_damaging(0.669) TCGA-66-2758-01 15 22368615 22368615 C G OR4M2 Missense_Mutation p.L14V 0.17 deleterious(0) probably_damaging(0.994) TCGA-66-2758-01 15 25315598 25315598 C T SNORD116-8 RNA 0.20 TCGA-66-2758-01 15 25344717 25344717 G T SNORD116-26 RNA 0.12 TCGA-66-2758-01 15 31362217 31362217 C T TRPM1 Intron 0.24 TCGA-66-2758-01 15 34130624 34130624 C A RYR3 Missense_Mutation p.S4148Y 0.42 benign(0.396) TCGA-66-2758-01 15 40590445 40590445 C G PLCB2 Missense_Mutation p.M378I 0.27 deleterious(0) probably_damaging(0.987) TCGA-66-2758-01 15 40627441 40627441 G T C15orf52 Missense_Mutation p.T508K 0.33 deleterious_low_confidence(0.01) benign(0.116) TCGA-66-2758-01 15 40705252 40705252 C A IVD Silent p.T253T 0.22 TCGA-66-2758-01 15 42481356 42481356 C T VPS39 Missense_Mutation p.V100I 0.17 tolerated(0.24) benign(0) TCGA-66-2758-01 15 65490998 65490998 C A CILP Silent p.V542V 0.39 TCGA-66-2758-01 15 66797698 66797698 G T ZWILCH Missense_Mutation p.A8S 0.21 tolerated(0.12) benign(0.296) TCGA-66-2758-01 15 72954811 72954811 G A GOLGA6B Missense_Mutation p.E356K 0.16 tolerated(0.23) possibly_damaging(0.486) TCGA-66-2758-01 16 12009925 12009925 G T GSPT1 5'Flank 0.57 TCGA-66-2758-01 16 12061699 12061699 A C TNFRSF17 Silent p.R184R 0.17 TCGA-66-2758-01 16 12061709 12061709 C T TNFRSF17 3'UTR 0.19 TCGA-66-2758-01 16 12061856 12061856 C G TNFRSF17 3'UTR 0.54 TCGA-66-2758-01 16 19567052 19567052 A G C16orf62 Missense_Mutation p.M90V 0.24 deleterious(0.01) benign(0.011) TCGA-66-2758-01 16 2350063 2350063 G C ABCA3 Nonsense_Mutation p.Y518* 0.53 TCGA-66-2758-01 16 3593454 3593454 C T NLRC3 Silent p.L1016L 0.32 TCGA-66-2758-01 16 57188238 57188238 G T FAM192A Silent p.S243S 0.16 TCGA-66-2758-01 16 65016169 65016169 C G CDH11 Missense_Mutation p.L345F 0.44 tolerated(0.31) possibly_damaging(0.905) TCGA-66-2758-01 16 67298340 67298340 G A SLC9A5 Missense_Mutation p.R643Q 0.70 tolerated(0.07) benign(0.003) TCGA-66-2758-01 16 67877203 67877203 C G THAP11 Missense_Mutation p.S249W 0.18 deleterious(0) probably_damaging(0.969) TCGA-66-2758-01 16 68934416 68934416 A C TANGO6 Missense_Mutation p.Y486S 0.58 deleterious(0) possibly_damaging(0.811) TCGA-66-2758-01 16 69726958 69726959 - T NFAT5 Frame_Shift_Ins p.L1079Ffs*35 0.30 TCGA-66-2758-01 16 69729158 69729178 CAAATGCCAGAGAATTCTCCA - NFAT5 In_Frame_Del p.Q1512_P1518del 0.36 TCGA-66-2758-01 16 70926361 70926361 C A HYDIN Missense_Mutation p.G3107V 0.38 probably_damaging(0.988) TCGA-66-2758-01 16 71317407 71317407 G C CMTR2 3'UTR 0.59 TCGA-66-2758-01 16 74339275 74339275 G C PSMD7 Missense_Mutation p.D207H 0.13 deleterious(0.04) benign(0.053) TCGA-66-2758-01 16 85711621 85711621 T C GINS2 3'UTR 0.17 TCGA-66-2758-01 16 88689746 88689746 G T ZC3H18 Missense_Mutation p.R596L 0.65 deleterious_low_confidence(0.01) unknown(0) TCGA-66-2758-01 16 89865350 89865350 T A FANCA Intron 0.23 TCGA-66-2758-01 17 2233662 2233662 C G TSR1 Intron 0.24 TCGA-66-2758-01 17 25924359 25924359 A T KSR1 Silent p.T318T 0.24 TCGA-66-2758-01 17 27308587 27308587 G T SEZ6 Missense_Mutation p.P176T 0.35 tolerated(0.25) possibly_damaging(0.653) TCGA-66-2758-01 17 28544291 28544291 C A SLC6A4 Missense_Mutation p.G244W 0.33 deleterious(0) probably_damaging(0.997) TCGA-66-2758-01 17 28548847 28548847 A G SLC6A4 Missense_Mutation p.S44P 0.34 tolerated(0.16) possibly_damaging(0.807) TCGA-66-2758-01 17 38504711 38504711 T A RARA Missense_Mutation p.C108S 0.24 deleterious(0) probably_damaging(0.999) TCGA-66-2758-01 17 39742654 39742654 C G KRT14 Missense_Mutation p.V145L 0.33 tolerated(0.09) benign(0.029) TCGA-66-2758-01 17 41561370 41561370 G T DHX8 5'UTR 0.07 TCGA-66-2758-01 17 42477794 42477794 A T GPATCH8 Missense_Mutation p.W551R 0.21 deleterious(0) probably_damaging(0.999) TCGA-66-2758-01 17 42883087 42883087 G A GJC1 Silent p.I33I 0.20 TCGA-66-2758-01 17 42926621 42926621 G A HIGD1B Splice_Site p.X34_splice 0.14 TCGA-66-2758-01 17 56164509 56164509 G A DYNLL2 Missense_Mutation p.D20N 0.11 tolerated(0.05) benign(0.213) TCGA-66-2758-01 17 57057444 57057444 C A PPM1E Silent p.T440T 0.42 TCGA-66-2758-01 17 57955528 57955528 C T TUBD1 Silent p.L235L 0.34 TCGA-66-2758-01 17 58073434 58073434 A G RP11-178C3.2 RNA 0.16 TCGA-66-2758-01 17 60348797 60348797 G T TBC1D3P2 RNA 0.33 TCGA-66-2758-01 17 62969471 62969471 C G AMZ2P1 RNA 0.15 TCGA-66-2758-01 17 66519041 66519041 G T PRKAR1A Nonsense_Mutation p.E108* 0.34 TCGA-66-2758-01 17 73126489 73126489 G C NT5C 3'UTR 0.23 TCGA-66-2758-01 17 7507222 7507224 AAC TAAAA FXR2 Splice_Site p.X101_splice 0.13 TCGA-66-2758-01 17 7579314 7579314 T G TP53 Missense_Mutation p.T125P 0.52 deleterious(0) probably_damaging(0.996) TCGA-66-2758-01 17 76200744 76200744 G T AFMID Nonsense_Mutation p.E106* 0.32 TCGA-66-2758-01 17 80540717 80540717 C A FOXK2 Missense_Mutation p.A337D 0.41 tolerated(0.11) possibly_damaging(0.823) TCGA-66-2758-01 18 12479814 12479814 C T SPIRE1 Missense_Mutation p.G430S 0.13 tolerated(1) benign(0.06) TCGA-66-2758-01 18 21402214 21402224 AGAATGATGTA - LAMA3 Splice_Site p.X770_splice 0.09 TCGA-66-2758-01 18 22807165 22807194 GTCCTCCATCCTGGAACCGGACTGAGAGCC - ZNF521 In_Frame_Del p.G230_D239del 0.18 TCGA-66-2758-01 18 23619384 23619384 T A SS18 Missense_Mutation p.Y215F 0.14 deleterious_low_confidence(0.01) benign(0.134) TCGA-66-2758-01 18 2538853 2538853 G C METTL4 3'UTR 0.24 TCGA-66-2758-01 18 34310661 34310661 G C FHOD3 Missense_Mutation p.R982T 0.47 deleterious(0) probably_damaging(0.962) TCGA-66-2758-01 18 46476230 46476230 C A SMAD7 Nonsense_Mutation p.E189* 0.40 TCGA-66-2758-01 18 5293298 5293298 G T ZBTB14 5'UTR 0.15 TCGA-66-2758-01 18 61390312 61390312 C - SERPINB11 Frame_Shift_Del p.R288Dfs*? 0.29 TCGA-66-2758-01 18 8088778 8088778 A T PTPRM Silent p.T595T 0.10 TCGA-66-2758-01 19 11917176 11917176 T C ZNF491 Silent p.C136C 0.29 TCGA-66-2758-01 19 13226547 13226547 C A TRMT1 Missense_Mutation p.V116F 0.31 deleterious(0.04) possibly_damaging(0.774) TCGA-66-2758-01 19 13915621 13915621 G A ZSWIM4 Missense_Mutation p.G124E 0.15 deleterious(0) probably_damaging(0.995) TCGA-66-2758-01 19 16000383 16000383 G A CYP4F2 Silent p.F256F 0.16 TCGA-66-2758-01 19 16641678 16641678 C T CHERP Missense_Mutation p.A230T 0.13 tolerated(0.17) probably_damaging(0.992) TCGA-66-2758-01 19 17088306 17088306 A C CPAMD8 Missense_Mutation p.S591A 0.14 tolerated(0.23) benign(0.146) TCGA-66-2758-01 19 20727226 20727226 T A ZNF737 3'UTR 0.19 TCGA-66-2758-01 19 21608494 21608494 A T ZNF493 3'UTR 0.38 TCGA-66-2758-01 19 24309505 24309505 G C ZNF254 Missense_Mutation p.E235Q 0.32 deleterious(0.03) benign(0.008) TCGA-66-2758-01 19 2934610 2934610 C T ZNF77 Missense_Mutation p.S172N 0.41 tolerated(0.21) possibly_damaging(0.802) TCGA-66-2758-01 19 34791809 34791809 T A KIAA0355 Missense_Mutation p.M144K 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.774) TCGA-66-2758-01 19 38229990 38229990 C G ZNF573 Missense_Mutation p.K467N 0.17 deleterious(0) possibly_damaging(0.827) TCGA-66-2758-01 19 40336992 40336992 G C FBL 5'UTR 0.27 TCGA-66-2758-01 19 40903752 40903752 G A PRX Silent p.G169G 0.30 TCGA-66-2758-01 19 41125356 41125356 G A LTBP4 Missense_Mutation p.D1125N 0.37 deleterious(0.01) probably_damaging(0.994) TCGA-66-2758-01 19 41224129 41224129 C G ITPKC Missense_Mutation p.F363L 0.16 tolerated(0.07) probably_damaging(0.99) TCGA-66-2758-01 19 41245400 41245400 G A ITPKC Missense_Mutation p.E663K 0.25 deleterious(0) probably_damaging(1) TCGA-66-2758-01 19 43257278 43257278 C G PSG8 3'Flank 0.29 TCGA-66-2758-01 19 44833689 44833689 G T ZNF112 Silent p.V213V 0.34 TCGA-66-2758-01 19 47570093 47570093 G A ZC3H4 Silent p.S1144S 0.39 TCGA-66-2758-01 19 50155648 50155648 C G SCAF1 Missense_Mutation p.P668A 0.22 unknown(0) TCGA-66-2758-01 19 51165684 51165684 C T SHANK1 Silent p.E2008E 0.21 TCGA-66-2758-01 19 54745997 54745997 G T LILRA6 Missense_Mutation p.S87Y 0.11 tolerated(0.7) benign(0.171) TCGA-66-2758-01 19 6744953 6744953 G C TRIP10 Missense_Mutation p.R311P 0.47 deleterious(0.02) probably_damaging(0.946) TCGA-66-2758-01 19 6897258 6897258 T C EMR1 Missense_Mutation p.S113P 0.44 tolerated(0.12) benign(0.046) TCGA-66-2758-01 19 7761738 7761738 G C FCER2 Missense_Mutation p.L148V 0.36 deleterious(0.01) probably_damaging(0.968) TCGA-66-2758-01 19 8467418 8467418 C A RAB11B Missense_Mutation p.N160K 0.21 deleterious_low_confidence(0) probably_damaging(0.925) TCGA-66-2758-01 19 8564041 8564041 C T PRAM1 Silent p.A217A 0.26 TCGA-66-2758-01 19 9068663 9068663 C T MUC16 Silent p.K6261K 0.19 TCGA-66-2758-01 19 9526346 9526346 G C ZNF266 Missense_Mutation p.S63C 0.30 deleterious(0.01) benign(0.198) TCGA-66-2758-01 1 145460115 145460115 C T POLR3GL Silent p.Q36Q 0.29 TCGA-66-2758-01 1 145562897 145562897 C A ANKRD35 Missense_Mutation p.T862K 0.48 tolerated(0.42) benign(0.044) TCGA-66-2758-01 1 146680526 146680526 G C FMO5 Missense_Mutation p.L240V 0.09 deleterious(0.04) benign(0.063) TCGA-66-2758-01 1 153303234 153303234 G C PGLYRP4 3'UTR 0.12 TCGA-66-2758-01 1 153317794 153317794 G A PGLYRP4 Silent p.C68C 0.42 TCGA-66-2758-01 1 153317795 153317795 C G PGLYRP4 Missense_Mutation p.C68S 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-66-2758-01 1 154947241 154947241 A G CKS1B Missense_Mutation p.Y7C 0.36 tolerated(0.07) benign(0.111) TCGA-66-2758-01 1 155630673 155630673 C T YY1AP1 Missense_Mutation p.R481Q 0.35 tolerated_low_confidence(0.4) benign(0.022) TCGA-66-2758-01 1 155823139 155823139 C T GON4L Missense_Mutation p.D145N 0.14 deleterious_low_confidence(0.03) possibly_damaging(0.728) TCGA-66-2758-01 1 155921998 155921998 C - ARHGEF2 Frame_Shift_Del p.P672Qfs*7 0.21 TCGA-66-2758-01 1 158326363 158326363 C G CD1E Nonsense_Mutation p.S327* 0.42 TCGA-66-2758-01 1 161163501 161163501 C A ADAMTS4 Missense_Mutation p.G555V 0.14 deleterious(0) probably_damaging(1) TCGA-66-2758-01 1 161512582 161512582 A G FCGR3A 3'UTR 0.33 TCGA-66-2758-01 1 16256434 16256434 C A SPEN Silent p.V1233V 0.33 TCGA-66-2758-01 1 165380257 165380257 T C RXRG Missense_Mutation p.R238G 0.31 deleterious(0.01) benign(0.104) TCGA-66-2758-01 1 167847818 167847818 A T ADCY10 Silent p.I424I 0.30 TCGA-66-2758-01 1 169489835 169489835 C G F5 Missense_Mutation p.R2039T 0.26 deleterious(0) probably_damaging(0.976) TCGA-66-2758-01 1 173478803 173478803 G C SLC9C2 Silent p.G981G 0.14 TCGA-66-2758-01 1 175299318 175299318 C A TNR Missense_Mutation p.D1229Y 0.34 deleterious(0) probably_damaging(1) TCGA-66-2758-01 1 179815248 179815248 G C TOR1AIP2 Silent p.V457V 0.17 TCGA-66-2758-01 1 19547255 19547255 C T EMC1 Intron 0.62 TCGA-66-2758-01 1 201009468 201009468 C G CACNA1S Missense_Mutation p.R1754T 0.25 deleterious_low_confidence(0.04) benign(0.001) TCGA-66-2758-01 1 201757714 201757714 G A NAV1 Silent p.E1038E 0.27 TCGA-66-2758-01 1 201868841 201868841 C T LMOD1 Missense_Mutation p.E434K 0.38 probably_damaging(1) TCGA-66-2758-01 1 205632421 205632421 G A SLC45A3 Silent p.F166F 0.06 TCGA-66-2758-01 1 207010317 207010317 C T IL19 Silent p.T91T 0.31 TCGA-66-2758-01 1 207803911 207803911 C G CR1 Missense_Mutation p.Q2468E 0.24 deleterious_low_confidence(0) benign(0.001) TCGA-66-2758-01 1 208073314 208073314 A T CD34 Silent p.T38T 0.14 TCGA-66-2758-01 1 213178591 213178621 TACGCAGATTGCAGGGCAGGCAGCATATGGA GT ANGEL2 Frame_Shift_Del p.P297Rfs*8 0.32 TCGA-66-2758-01 1 215844357 215844357 A G USH2A Missense_Mutation p.F4697S 0.35 possibly_damaging(0.869) TCGA-66-2758-01 1 231364912 231364912 T C C1orf131 Missense_Mutation p.E165G 0.33 deleterious(0) probably_damaging(0.994) TCGA-66-2758-01 1 32196749 32196749 C A BAI2 Missense_Mutation p.E1344D 0.54 tolerated(0.18) benign(0.006) TCGA-66-2758-01 1 33360393 33360393 A G TMEM54 3'UTR 0.17 TCGA-66-2758-01 1 38197148 38197148 G T EPHA10 Missense_Mutation p.S533Y 0.27 deleterious(0) probably_damaging(0.931) TCGA-66-2758-01 1 39851393 39851393 C G MACF1 Missense_Mutation p.I2650M 0.55 possibly_damaging(0.73) TCGA-66-2758-01 1 47689737 47689737 C G TAL1 Missense_Mutation p.M160I 0.22 tolerated(0.21) benign(0.002) TCGA-66-2758-01 1 51887560 51887560 T G EPS15 Intron 0.17 TCGA-66-2758-01 1 78098555 78098555 C T ZZZ3 Missense_Mutation p.R162Q 0.20 tolerated_low_confidence(0.08) benign(0.116) TCGA-66-2758-01 1 78435678 78435678 C G FUBP1 Missense_Mutation p.D48H 0.62 deleterious(0) probably_damaging(0.982) TCGA-66-2758-01 1 909828 909828 G A PLEKHN1 Missense_Mutation p.R570Q 0.28 tolerated_low_confidence(0.64) benign(0.002) TCGA-66-2758-01 20 13371083 13371096 AGTCTTGAAATGTG - TASP1 Frame_Shift_Del p.H392Sfs*41 0.24 TCGA-66-2758-01 20 20177306 20177306 T A C20orf26 Missense_Mutation p.F561L 0.42 tolerated(0.07) benign(0.244) TCGA-66-2758-01 20 2443759 2443759 T C SNRPB Missense_Mutation p.M179V 0.20 tolerated(0.5) unknown(0) TCGA-66-2758-01 20 2635176 2635176 G C NOP56 Missense_Mutation p.G109R 0.20 deleterious(0.01) benign(0.037) TCGA-66-2758-01 20 35425292 35425292 A C SOGA1 Missense_Mutation p.L1159V 0.18 tolerated(0.11) benign(0.381) TCGA-66-2758-01 20 47864358 47864358 C G ZNFX1 Missense_Mutation p.E1735Q 0.41 tolerated(0.26) benign(0.003) TCGA-66-2758-01 20 52775592 52775592 T - CYP24A1 Frame_Shift_Del p.K354Rfs*18 0.20 TCGA-66-2758-01 21 30909641 30909641 C G GRIK1 Missense_Mutation p.K920N 0.56 tolerated_low_confidence(0.06) probably_damaging(0.959) TCGA-66-2758-01 21 33065678 33065678 C A SCAF4 Missense_Mutation p.R481I 0.34 benign(0.308) TCGA-66-2758-01 21 38072165 38072165 C T SIM2 Missense_Mutation p.A40V 0.73 deleterious(0) probably_damaging(0.996) TCGA-66-2758-01 21 38309157 38309157 A T HLCS Silent p.I196I 0.22 TCGA-66-2758-01 21 47704496 47704496 C G MCM3AP Missense_Mutation p.K235N 0.23 tolerated(0.09) possibly_damaging(0.603) TCGA-66-2758-01 22 23962792 23962792 G T C22orf43 Nonsense_Mutation p.S132* 0.19 TCGA-66-2758-01 22 30639554 30639554 G A LIF 3'UTR 0.17 TCGA-66-2758-01 22 36900335 36900335 C G FOXRED2 Missense_Mutation p.A287P 0.18 tolerated(0.12) benign(0.02) TCGA-66-2758-01 22 38028721 38028721 C G GGA1 3'UTR 0.28 TCGA-66-2758-01 22 38121718 38121718 C A TRIOBP Missense_Mutation p.P1052H 0.49 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-66-2758-01 22 38621457 38621457 G A TMEM184B Missense_Mutation p.S254F 0.31 deleterious(0.02) possibly_damaging(0.481) TCGA-66-2758-01 22 39709250 39709250 G A RPL3 Silent p.T371T 0.31 TCGA-66-2758-01 22 40661018 40661018 G T TNRC6B Missense_Mutation p.D262Y 0.13 deleterious(0.02) possibly_damaging(0.845) TCGA-66-2758-01 22 44285245 44285245 G C PNPLA5 Missense_Mutation p.F222L 0.13 tolerated(0.1) benign(0.012) TCGA-66-2758-01 22 44892926 44892926 C T LDOC1L Missense_Mutation p.A171T 0.36 tolerated(0.4) possibly_damaging(0.908) TCGA-66-2758-01 22 46780531 46780531 C A CELSR1 Silent p.P2264P 0.40 TCGA-66-2758-01 22 50280597 50280599 ACA T ZBED4 Frame_Shift_Del p.H1096Lfs*3 0.46 TCGA-66-2758-01 2 110323374 110323374 G C SEPT10 Silent p.V275V 0.18 TCGA-66-2758-01 2 111806850 111806850 G C ACOXL Missense_Mutation p.Q475H 0.12 deleterious(0.01) possibly_damaging(0.748) TCGA-66-2758-01 2 113943490 113943490 C T PSD4 Missense_Mutation p.P429L 0.33 tolerated_low_confidence(0.21) benign(0.006) TCGA-66-2758-01 2 130912742 130912742 G - SMPD4 Frame_Shift_Del p.K500Sfs*21 0.32 TCGA-66-2758-01 2 131356222 131356222 G T CFC1 Missense_Mutation p.F80L 0.14 tolerated(0.24) benign(0.032) TCGA-66-2758-01 2 141128305 141128305 C A LRP1B Missense_Mutation p.G3661V 0.15 probably_damaging(0.988) TCGA-66-2758-01 2 141128306 141128306 C G LRP1B Missense_Mutation p.G3661R 0.15 probably_damaging(0.988) TCGA-66-2758-01 2 141250190 141250190 G T LRP1B Missense_Mutation p.T3036K 0.12 benign(0.403) TCGA-66-2758-01 2 153575138 153575138 C G ARL6IP6 5'UTR 0.21 TCGA-66-2758-01 2 158406748 158406748 C G ACVR1C Missense_Mutation p.R234P 0.10 deleterious(0) probably_damaging(1) TCGA-66-2758-01 2 158406867 158406867 C A ACVR1C Silent p.T194T 0.21 TCGA-66-2758-01 2 160755237 160755237 C T LY75-CD302 Missense_Mutation p.G143E 0.20 tolerated(0.06) probably_damaging(0.998) TCGA-66-2758-01 2 160755382 160755382 G T LY75-CD302 Missense_Mutation p.L95M 0.46 deleterious(0) probably_damaging(0.986) TCGA-66-2758-01 2 168107682 168107682 G A XIRP2 Silent p.E3260E 0.20 TCGA-66-2758-01 2 169764111 169764111 C G G6PC2 Missense_Mutation p.P197R 0.13 tolerated(0.77) benign(0.093) TCGA-66-2758-01 2 179441933 179441933 G A TTN Silent p.P23043P 0.22 TCGA-66-2758-01 2 179453427 179453427 G A TTN Nonsense_Mutation p.R21009* 0.44 TCGA-66-2758-01 2 179613541 179613541 G A TTN Intron 0.23 TCGA-66-2758-01 2 179613794 179613794 G A TTN Intron 0.16 TCGA-66-2758-01 2 179614125 179614125 G T TTN Intron 0.39 TCGA-66-2758-01 2 179631292 179631292 G A TTN Silent p.D3173D 0.41 TCGA-66-2758-01 2 179649052 179649052 G T TTN Silent p.A840A 0.46 TCGA-66-2758-01 2 182542393 182542393 C T NEUROD1 3'UTR 0.17 TCGA-66-2758-01 2 191064921 191064929 AAATGTGAC - C2orf88 3'UTR 0.50 TCGA-66-2758-01 2 191827719 191827719 C A GLS 3'UTR 0.13 TCGA-66-2758-01 2 1921039 1921039 C A MYT1L Missense_Mutation p.G517V 0.39 deleterious(0) probably_damaging(1) TCGA-66-2758-01 2 220435043 220435043 G C OBSL1 Silent p.L304L 0.22 TCGA-66-2758-01 2 223791784 223791784 C G ACSL3 Missense_Mutation p.L448V 0.58 tolerated(0.43) possibly_damaging(0.777) TCGA-66-2758-01 2 24930643 24930643 G T NCOA1 Silent p.L768L 0.37 TCGA-66-2758-01 2 25170608 25170608 G C DNAJC27 Silent p.V233V 0.16 TCGA-66-2758-01 2 27480121 27480121 G T SLC30A3 Silent p.P226P 0.27 TCGA-66-2758-01 2 32703827 32703827 C A BIRC6 Missense_Mutation p.S2398Y 0.14 probably_damaging(0.915) TCGA-66-2758-01 2 55254534 55254534 G C RTN4 Missense_Mutation p.S234C 0.17 deleterious(0) probably_damaging(0.999) TCGA-66-2758-01 2 74154148 74154148 G T DGUOK Silent p.G37G 0.38 TCGA-66-2758-01 2 74273535 74273535 G C TET3 Missense_Mutation p.G29A 0.21 deleterious_low_confidence(0.01) probably_damaging(0.938) TCGA-66-2758-01 2 89309569 89309569 A T IGKV1-9 Missense_Mutation p.S87R 0.44 deleterious(0.02) possibly_damaging(0.686) TCGA-66-2758-01 2 95943153 95943153 A G PROM2 Missense_Mutation p.T272A 0.30 tolerated(0.12) possibly_damaging(0.832) TCGA-66-2758-01 2 97527051 97527051 T C SEMA4C Missense_Mutation p.Y605C 0.30 deleterious(0.01) possibly_damaging(0.606) TCGA-66-2758-01 2 99636926 99636926 G T TSGA10 Missense_Mutation p.S545Y 0.18 deleterious(0.03) benign(0.191) TCGA-66-2758-01 3 108812288 108812288 C T MORC1 Silent p.L228L 0.33 TCGA-66-2758-01 3 111831716 111831716 G T C3orf52 Intron 0.16 TCGA-66-2758-01 3 111831717 111831717 C G C3orf52 Intron 0.15 TCGA-66-2758-01 3 127379588 127379588 G T PODXL2 Missense_Mutation p.M239I 0.34 tolerated(0.1) benign(0.001) TCGA-66-2758-01 3 132221231 132221231 G T DNAJC13 Missense_Mutation p.W1545C 0.13 deleterious(0) probably_damaging(0.99) TCGA-66-2758-01 3 141006283 141006283 C G ACPL2 Missense_Mutation p.L165V 0.17 deleterious(0) probably_damaging(1) TCGA-66-2758-01 3 142985589 142985589 A T SLC9A9 Nonsense_Mutation p.Y631* 0.33 TCGA-66-2758-01 3 149374962 149374962 C A WWTR1 Silent p.R44R 0.65 TCGA-66-2758-01 3 152058759 152058759 A T TMEM14E 5'UTR 0.53 TCGA-66-2758-01 3 157031515 157031515 C G VEPH1 Missense_Mutation p.Q635H 0.21 tolerated(0.2) benign(0.104) TCGA-66-2758-01 3 164757683 164757683 G C SI Missense_Mutation p.L746V 0.23 deleterious(0) benign(0.332) TCGA-66-2758-01 3 164905998 164905998 G C SLITRK3 Missense_Mutation p.P874R 0.23 deleterious_low_confidence(0.02) probably_damaging(0.937) TCGA-66-2758-01 3 183855722 183855722 G A EIF2B5 Missense_Mutation p.M181I 0.12 tolerated(0.05) possibly_damaging(0.841) TCGA-66-2758-01 3 184038451 184038451 G T EIF4G1 Missense_Mutation p.D198Y 0.05 deleterious(0) probably_damaging(0.997) TCGA-66-2758-01 3 186760650 186760650 A T ST6GAL1 Missense_Mutation p.K53N 0.10 benign(0.041) TCGA-66-2758-01 3 186943130 186943130 C G MASP1 Missense_Mutation p.E575Q 0.19 tolerated(0.29) benign(0.001) TCGA-66-2758-01 3 194877186 194877186 T A XXYLT1 Silent p.P259P 0.25 TCGA-66-2758-01 3 195486098 195486098 C T MUC4 Silent p.V4961V 0.13 TCGA-66-2758-01 3 197423861 197423861 C T KIAA0226 Missense_Mutation p.E441K 0.22 deleterious(0.03) benign(0.157) TCGA-66-2758-01 3 33580423 33580423 T C CLASP2 Missense_Mutation p.Y1147C 0.64 deleterious(0.01) probably_damaging(0.998) TCGA-66-2758-01 3 38622756 38622756 C T SCN5A Missense_Mutation p.R965H 0.33 deleterious(0) probably_damaging(0.999) TCGA-66-2758-01 3 53003227 53003227 G C SFMBT1 5'UTR 0.54 TCGA-66-2758-01 3 57493430 57493430 A C DNAH12 Silent p.G279G 0.27 TCGA-66-2758-01 3 63649798 63649798 A T SNTN 3'UTR 0.54 TCGA-66-2758-01 4 106155423 106155423 G A TET2 Silent p.Q108Q 0.28 TCGA-66-2758-01 4 113568940 113568940 A G LARP7 Silent p.K371K 0.52 TCGA-66-2758-01 4 144390336 144390336 G C GAB1 Silent p.V723V 0.31 TCGA-66-2758-01 4 146576521 146576521 A C MMAA Missense_Mutation p.I398L 0.23 tolerated(0.24) benign(0) TCGA-66-2758-01 4 175898418 175898418 G T ADAM29 Missense_Mutation p.C581F 0.35 deleterious(0) probably_damaging(1) TCGA-66-2758-01 4 177032792 177032792 G A WDR17 Missense_Mutation p.V45I 0.31 tolerated(0.13) probably_damaging(0.989) TCGA-66-2758-01 4 184182512 184182512 A G WWC2 Missense_Mutation p.H579R 0.18 tolerated(0.53) benign(0.001) TCGA-66-2758-01 4 24534516 24534527 TTCTTATATTAA - DHX15 In_Frame_Del p.I687_R690del 0.35 TCGA-66-2758-01 4 2951675 2951675 G C NOP14 Missense_Mutation p.P423R 0.32 deleterious(0) probably_damaging(0.998) TCGA-66-2758-01 4 41750405 41750405 T A PHOX2B Missense_Mutation p.S75C 0.32 tolerated(0.14) possibly_damaging(0.901) TCGA-66-2758-01 4 46060612 46060612 T C GABRG1 Missense_Mutation p.Y218C 0.16 deleterious(0) probably_damaging(0.961) TCGA-66-2758-01 4 46930261 46930261 T A GABRA4 Missense_Mutation p.K549I 0.38 tolerated_low_confidence(0.1) possibly_damaging(0.822) TCGA-66-2758-01 4 47939169 47939169 C A CNGA1 Missense_Mutation p.V517F 0.17 deleterious(0) probably_damaging(0.991) TCGA-66-2758-01 4 77003475 77003475 A G ART3 Missense_Mutation p.K190E 0.04 tolerated(0.06) benign(0.33) TCGA-66-2758-01 4 77677699 77677699 A T SHROOM3 Missense_Mutation p.T1603S 0.12 tolerated(0.46) benign(0.007) TCGA-66-2758-01 4 77817078 77817078 C A SOWAHB Missense_Mutation p.G642V 0.34 deleterious(0) probably_damaging(0.988) TCGA-66-2758-01 4 78792917 78792917 G T MRPL1 Missense_Mutation p.R17S 0.27 tolerated(0.15) benign(0.249) TCGA-66-2758-01 4 8602926 8602926 G T CPZ Missense_Mutation p.Q66H 0.71 deleterious(0.03) benign(0.436) TCGA-66-2758-01 4 89574024 89574024 C G HERC3 Silent p.G156G 0.47 TCGA-66-2758-01 4 91230459 91230459 G A CCSER1 Missense_Mutation p.A342T 0.50 tolerated(0.3) probably_damaging(0.999) TCGA-66-2758-01 5 127420339 127420339 C A SLC12A2 Silent p.A231A 0.19 TCGA-66-2758-01 5 132088668 132088668 C G CCNI2 3'UTR 0.39 TCGA-66-2758-01 5 134018131 134018131 C G SEC24A Missense_Mutation p.Q484E 0.65 deleterious(0) benign(0.023) TCGA-66-2758-01 5 139886511 139886511 A T ANKHD1 Missense_Mutation p.Y1167F 0.61 unknown(0) TCGA-66-2758-01 5 140221129 140221129 C T PCDHA8 Silent p.L75L 0.22 TCGA-66-2758-01 5 140554031 140554031 C A PCDHB7 Missense_Mutation p.P539T 0.61 deleterious_low_confidence(0) possibly_damaging(0.907) TCGA-66-2758-01 5 140554309 140554309 C T PCDHB7 Silent p.S631S 0.11 TCGA-66-2758-01 5 140559155 140559155 C G PCDHB8 Missense_Mutation p.L514V 0.15 deleterious_low_confidence(0.01) benign(0.23) TCGA-66-2758-01 5 140559354 140559354 C T PCDHB8 Missense_Mutation p.A580V 0.16 deleterious_low_confidence(0.02) benign(0.09) TCGA-66-2758-01 5 140865571 140865571 C T PCDHGC4 Silent p.V277V 0.20 TCGA-66-2758-01 5 1432617 1432617 G A SLC6A3 Silent p.N205N 0.09 TCGA-66-2758-01 5 14465796 14465796 T C TRIO Intron 0.15 TCGA-66-2758-01 5 1479781 1479781 G A LPCAT1 Silent p.I257I 0.10 TCGA-66-2758-01 5 148712284 148712284 G T AFAP1L1 Missense_Mutation p.A668S 0.10 tolerated(0.07) benign(0.066) TCGA-66-2758-01 5 150488040 150488040 C T ANXA6 Missense_Mutation p.V586I 0.04 tolerated(0.09) benign(0.115) TCGA-66-2758-01 5 156566273 156566273 C G MED7 Missense_Mutation p.R57P 0.15 deleterious(0.01) benign(0.281) TCGA-66-2758-01 5 161580227 161580227 C T GABRG2 Silent p.C467C 0.63 TCGA-66-2758-01 5 167943953 167943953 C G RARS Missense_Mutation p.I541M 0.17 deleterious(0.04) probably_damaging(1) TCGA-66-2758-01 5 171766306 171766306 C A SH3PXD2B Missense_Mutation p.K601N 0.63 deleterious(0) probably_damaging(0.928) TCGA-66-2758-01 5 172755103 172755103 C G STC2 Missense_Mutation p.E32Q 0.19 tolerated(0.05) benign(0.169) TCGA-66-2758-01 5 175782611 175782611 G A KIAA1191 Missense_Mutation p.P57L 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-66-2758-01 5 177573150 177573150 C A RMND5B Silent p.R244R 0.28 TCGA-66-2758-01 5 179292955 179292968 GTCCTTGAGATGTA - TBC1D9B Intron 0.24 TCGA-66-2758-01 5 1798922 1798922 T C MRPL36 Missense_Mutation p.E43G 0.34 tolerated(0.13) benign(0.002) TCGA-66-2758-01 5 34824081 34824081 G C RAI14 Missense_Mutation p.E715Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-66-2758-01 5 35035343 35035343 C G AGXT2 Missense_Mutation p.D189H 0.12 deleterious(0.02) probably_damaging(0.979) TCGA-66-2758-01 5 40762805 40762805 T C PRKAA1 3'Flank 0.17 TCGA-66-2758-01 5 61681323 61681323 C G KIF2A Missense_Mutation p.S721C 0.33 deleterious(0.01) probably_damaging(0.979) TCGA-66-2758-01 5 68513726 68513726 C G MRPS36 Intron 0.22 TCGA-66-2758-01 5 77334898 77334898 T A AP3B1 Silent p.I926I 0.37 TCGA-66-2758-01 5 77334899 77334899 A T AP3B1 Missense_Mutation p.I926K 0.38 tolerated(0.49) benign(0.308) TCGA-66-2758-01 6 102511876 102511876 A C GRIK2 Intron 0.19 TCGA-66-2758-01 6 10529114 10529114 G C GCNT2 5'UTR 0.52 TCGA-66-2758-01 6 110746048 110746048 C T SLC22A16 3'UTR 0.51 TCGA-66-2758-01 6 13228281 13228281 G T PHACTR1 Missense_Mutation p.S407I 0.49 deleterious(0.01) benign(0.006) TCGA-66-2758-01 6 136990473 136990473 G C MAP3K5 Silent p.L438L 0.21 TCGA-66-2758-01 6 149700431 149700431 G A TAB2 Silent p.T460T 0.26 TCGA-66-2758-01 6 170169794 170169794 G A ERMARD Silent p.L406L 0.14 TCGA-66-2758-01 6 27860774 27860774 G C HIST1H2AM Missense_Mutation p.L52V 0.24 deleterious_low_confidence(0) benign(0.438) TCGA-66-2758-01 6 31911428 31911428 C A CFB Silent p.P372P 0.23 TCGA-66-2758-01 6 37414179 37414179 G T CMTR1 Missense_Mutation p.R133L 0.43 tolerated(0.08) benign(0.005) TCGA-66-2758-01 6 401482 401482 G A IRF4 Silent p.T268T 0.65 TCGA-66-2758-01 6 87969026 87969026 A G ZNF292 Silent p.Q1893Q 0.06 TCGA-66-2758-01 6 96986567 96986575 AGGGCATTC - UFL1 In_Frame_Del p.R347_F349del 0.26 TCGA-66-2758-01 7 101870950 101870950 G T CUX1 Splice_Site p.X1156_splice 0.13 TCGA-66-2758-01 7 11075331 11075331 A G PHF14 Missense_Mutation p.K507R 0.22 tolerated(0.48) probably_damaging(0.985) TCGA-66-2758-01 7 120606683 120606683 C A ING3 Missense_Mutation p.S123Y 0.12 deleterious(0) probably_damaging(0.982) TCGA-66-2758-01 7 122033251 122033251 T A CADPS2 Missense_Mutation p.T1003S 0.14 tolerated(1) benign(0.001) TCGA-66-2758-01 7 129095105 129095105 G A STRIP2 Missense_Mutation p.E243K 0.15 deleterious(0.01) probably_damaging(0.923) TCGA-66-2758-01 7 129120722 129120722 C T STRIP2 Missense_Mutation p.R681W 0.42 deleterious(0) probably_damaging(1) TCGA-66-2758-01 7 129125451 129125453 AGA - STRIP2 In_Frame_Del p.E764del 0.44 TCGA-66-2758-01 7 141490128 141490128 A T TAS2R5 5'UTR 0.13 TCGA-66-2758-01 7 142131914 142131914 G A TRBV5-6 5'UTR 0.44 TCGA-66-2758-01 7 143632546 143632546 C T OR2F2 Missense_Mutation p.A74V 0.12 deleterious(0) benign(0.345) TCGA-66-2758-01 7 143632547 143632547 C A OR2F2 Silent p.A74A 0.12 TCGA-66-2758-01 7 144098543 144098543 G C NOBOX Missense_Mutation p.S147C 0.51 deleterious(0.03) benign(0.06) TCGA-66-2758-01 7 149492724 149492724 C G SSPO RNA 0.21 TCGA-66-2758-01 7 153584801 153584801 G C DPP6 Missense_Mutation p.K11N 0.13 tolerated(0.22) benign(0.003) TCGA-66-2758-01 7 37924760 37924760 G T NME8 Missense_Mutation p.A385S 0.24 deleterious(0.01) probably_damaging(0.962) TCGA-66-2758-01 7 44612228 44612228 C T DDX56 Missense_Mutation p.E167K 0.22 deleterious(0.01) probably_damaging(0.995) TCGA-66-2758-01 7 44739744 44739744 T G OGDH Missense_Mutation p.L812R 0.22 tolerated(0.36) possibly_damaging(0.739) TCGA-66-2758-01 7 44874124 44874124 C T H2AFV Silent p.K121K 0.20 TCGA-66-2758-01 7 48056919 48056919 C G SUN3 Missense_Mutation p.Q76H 0.09 deleterious_low_confidence(0.05) benign(0.03) TCGA-66-2758-01 7 56149926 56149926 A T PHKG1 Missense_Mutation p.Y222N 0.16 deleterious(0) probably_damaging(1) TCGA-66-2758-01 7 82585285 82585285 C T PCLO Missense_Mutation p.G1662R 0.08 unknown(0) TCGA-66-2758-01 7 91715617 91715617 T C AKAP9 Missense_Mutation p.F3034L 0.20 probably_damaging(0.994) TCGA-66-2758-01 7 92000830 92000830 G T ANKIB1 Missense_Mutation p.C509F 0.16 deleterious(0.02) possibly_damaging(0.893) TCGA-66-2758-01 7 99698925 99698955 GAGGGCCGTGCGGCCGCGCTTGGCGGGCTCA - MCM7 5'UTR 0.48 TCGA-66-2758-01 8 106801085 106801085 G T ZFPM2 Silent p.L224L 0.12 TCGA-66-2758-01 8 106813738 106813738 C T ZFPM2 Silent p.S476S 0.18 TCGA-66-2758-01 8 110424514 110424514 G C PKHD1L1 Missense_Mutation p.Q702H 0.16 deleterious(0.05) benign(0.429) TCGA-66-2758-01 8 113326155 113326155 C G CSMD3 Missense_Mutation p.G2559A 0.33 deleterious(0.01) possibly_damaging(0.542) TCGA-66-2758-01 8 120977528 120977528 A T DEPTOR Missense_Mutation p.Y161F 0.44 tolerated(0.19) benign(0.308) TCGA-66-2758-01 8 123964616 123964616 A T ZHX2 Missense_Mutation p.Q289L 0.45 tolerated(0.12) probably_damaging(0.996) TCGA-66-2758-01 8 133023262 133023262 C G EFR3A 3'UTR 0.44 TCGA-66-2758-01 8 13948076 13948076 C A SGCZ Missense_Mutation p.S272I 0.18 deleterious(0) benign(0.328) TCGA-66-2758-01 8 139825240 139825240 A G COL22A1 Missense_Mutation p.I423T 0.42 unknown(0) TCGA-66-2758-01 8 144874791 144874791 G A SCRIB Nonsense_Mutation p.Q1398* 0.43 TCGA-66-2758-01 8 145692682 145692682 G T KIFC2 Missense_Mutation p.G143W 0.34 deleterious_low_confidence(0) probably_damaging(0.944) TCGA-66-2758-01 8 17611496 17611496 G C MTUS1 Silent p.A607A 0.16 TCGA-66-2758-01 8 17722242 17722242 C T FGL1 Silent p.L266L 0.19 TCGA-66-2758-01 8 19362722 19362722 A T CSGALNACT1 Missense_Mutation p.D208E 0.30 deleterious(0) possibly_damaging(0.73) TCGA-66-2758-01 8 30706460 30706460 C A TEX15 Missense_Mutation p.S25I 0.46 deleterious(0) probably_damaging(0.952) TCGA-66-2758-01 8 33318925 33318925 C A FUT10 Missense_Mutation p.V16F 0.44 tolerated(0.4) benign(0.011) TCGA-66-2758-01 8 37972489 37972489 G T ASH2L Missense_Mutation p.D250Y 0.15 deleterious(0) possibly_damaging(0.88) TCGA-66-2758-01 8 55538974 55538974 T A RP1 Silent p.S844S 0.40 TCGA-66-2758-01 8 66701134 66701134 T A PDE7A Intron 0.17 TCGA-66-2758-01 8 68169977 68169977 T C ARFGEF1 Missense_Mutation p.H839R 0.19 deleterious(0) probably_damaging(1) TCGA-66-2758-01 8 77745637 77745637 C G ZFHX4 Missense_Mutation p.T1130S 0.50 benign(0.002) TCGA-66-2758-01 8 92401612 92401612 G T SLC26A7 Silent p.L574L 0.29 TCGA-66-2758-01 8 92401613 92401613 G T SLC26A7 Missense_Mutation p.D575Y 0.29 deleterious(0) probably_damaging(0.98) TCGA-66-2758-01 8 99539019 99539019 T C STK3 Missense_Mutation p.N451S 0.47 tolerated(0.31) benign(0.002) TCGA-66-2758-01 9 104172003 104172003 T G ZNF189 3'UTR 0.21 TCGA-66-2758-01 9 117797579 117797579 C G TNC Missense_Mutation p.E1897D 0.19 tolerated(0.62) benign(0.074) TCGA-66-2758-01 9 117848712 117848712 T C TNC Missense_Mutation p.D433G 0.06 deleterious(0.01) probably_damaging(1) TCGA-66-2758-01 9 131765730 131765730 C A NUP188 Silent p.I1477I 0.61 TCGA-66-2758-01 9 134351441 134351441 A C PRRC2B Missense_Mutation p.K1309Q 0.16 deleterious(0) probably_damaging(0.998) TCGA-66-2758-01 9 135553825 135553825 T C GTF3C4 Silent p.S273S 0.73 TCGA-66-2758-01 9 138831596 138831596 A C UBAC1 Missense_Mutation p.S296A 0.06 tolerated(0.75) benign(0.02) TCGA-66-2758-01 9 139270830 139270830 C T SNAPC4 Missense_Mutation p.R1463Q 0.41 deleterious(0) unknown(0) TCGA-66-2758-01 9 21367808 21367808 C G IFNA13 Missense_Mutation p.D68H 0.42 tolerated(0.07) benign(0.078) TCGA-66-2758-01 9 33135352 33135352 C G B4GALT1 Silent p.V161V 0.15 TCGA-66-2758-01 9 34493233 34493233 G C DNAI1 Missense_Mutation p.Q241H 0.17 deleterious(0.02) benign(0.235) TCGA-66-2758-01 9 34556282 34556282 G C CNTFR Missense_Mutation p.R247G 0.14 deleterious(0) probably_damaging(0.994) TCGA-66-2758-01 9 35044632 35044643 CTGACGGGGAGG - C9orf131 In_Frame_Del p.D670_A673del 0.18 TCGA-66-2758-01 9 35555352 35555352 G C RUSC2 Missense_Mutation p.E770D 0.03 tolerated(0.31) benign(0.005) TCGA-66-2758-01 9 35650382 35650382 C T SIT1 Silent p.L89L 0.14 TCGA-66-2758-01 9 39177329 39177329 C A CNTNAP3 Missense_Mutation p.D305Y 0.45 deleterious(0.01) probably_damaging(0.95) TCGA-66-2758-01 9 70177109 70177109 G A FOXD4L5 Missense_Mutation p.T292I 0.16 tolerated_low_confidence(0.12) benign(0.002) TCGA-66-2758-01 9 84608637 84608637 T C SPATA31D1 Silent p.D1084D 0.15 TCGA-66-2758-01 9 88967621 88967621 G A ZCCHC6 Missense_Mutation p.T165M 0.16 tolerated_low_confidence(1) benign(0.002) TCGA-66-2758-01 X 130217169 130217169 A G ARHGAP36 Missense_Mutation p.D95G 0.71 tolerated(0.44) benign(0.001) TCGA-66-2758-01 X 14038351 14038351 G C GEMIN8 Missense_Mutation p.I106M 0.48 tolerated(0.22) benign(0.014) TCGA-66-2758-01 X 152823611 152823611 C T ATP2B3 Silent p.I825I 0.79 TCGA-66-2758-01 X 153132842 153132842 C A L1CAM Silent p.P702P 0.79 TCGA-66-2758-01 X 16170713 16170713 C G GRPR Missense_Mutation p.S367C 0.46 deleterious(0) probably_damaging(0.931) TCGA-66-2758-01 X 37670216 37670216 G A CYBB 3'UTR 0.43 TCGA-66-2758-01 X 48418401 48418401 G A TBC1D25 Missense_Mutation p.D369N 0.73 deleterious(0.04) probably_damaging(0.999) TCGA-66-2758-01 X 48826210 48826210 C T KCND1 Missense_Mutation p.G157R 0.33 tolerated(0.56) benign(0.006) TCGA-66-2758-01 X 57313306 57313306 G C FAAH2 Silent p.A16A 0.28 TCGA-66-2758-01 X 67940189 67940189 T C STARD8 Missense_Mutation p.V658A 1.00 deleterious(0.01) benign(0.113) TCGA-66-2758-01 X 78426582 78426582 C G GPR174 Nonsense_Mutation p.Y26* 0.06 TCGA-66-2758-01 X 79282760 79282760 G C TBX22 Silent p.T268T 0.68 TCGA-66-2758-01 X 96684741 96684741 C G DIAPH2 Missense_Mutation p.P1080A 0.54 tolerated(0.78) benign(0.297) TCGA-66-2758-01 Y 6114399 6114399 G C TSPY2 Silent p.V30V 0.55 TCGA-66-2759-01 10 103920564 103920564 A G NOLC1 Silent p.T485T 0.23 TCGA-66-2759-01 10 104849467 104849467 C T NT5C2 Missense_Mutation p.E550K 0.26 deleterious(0.01) benign(0) TCGA-66-2759-01 10 105207318 105207318 C T CALHM2 Missense_Mutation p.G188E 0.18 deleterious(0) probably_damaging(1) TCGA-66-2759-01 10 108366960 108366960 A T SORCS1 Silent p.A1043A 0.07 TCGA-66-2759-01 10 108716299 108716299 C A SORCS1 Missense_Mutation p.G200W 0.22 deleterious(0) probably_damaging(0.999) TCGA-66-2759-01 10 117026389 117026389 G C ATRNL1 Missense_Mutation p.G630R 0.19 deleterious(0.03) probably_damaging(0.99) TCGA-66-2759-01 10 118220599 118220599 T A PNLIPRP3 Splice_Site p.X229_splice 0.27 TCGA-66-2759-01 10 127542766 127542766 C T DHX32 Missense_Mutation p.E286K 0.13 tolerated(0.11) benign(0.009) TCGA-66-2759-01 10 28420572 28420572 C A MPP7 Missense_Mutation p.V122L 0.21 tolerated(0.41) benign(0.001) TCGA-66-2759-01 10 37506638 37506638 A G ANKRD30A Silent p.Q977Q 0.19 TCGA-66-2759-01 10 50315656 50315656 G T VSTM4 Nonsense_Mutation p.S147* 0.32 TCGA-66-2759-01 10 50316010 50316010 G A VSTM4 Missense_Mutation p.S29F 0.21 deleterious(0) probably_damaging(0.951) TCGA-66-2759-01 10 52005154 52005154 G C ASAH2 Missense_Mutation p.A63G 0.17 tolerated_low_confidence(0.35) benign(0.016) TCGA-66-2759-01 10 55826581 55826581 G T PCDH15 Missense_Mutation p.P719H 0.25 tolerated(0.09) benign(0.035) TCGA-66-2759-01 10 60150600 60150600 G T TFAM Missense_Mutation p.A173S 0.31 tolerated(0.51) benign(0.294) TCGA-66-2759-01 10 87628773 87628773 C A GRID1 Missense_Mutation p.M315I 0.28 tolerated(0.24) benign(0.036) TCGA-66-2759-01 10 89503199 89503199 G A PAPSS2 Missense_Mutation p.R431H 0.23 tolerated(0.13) benign(0.017) TCGA-66-2759-01 10 93619220 93619220 G T TNKS2 Silent p.G1032G 0.22 TCGA-66-2759-01 10 96701714 96701714 C G CYP2C9 Missense_Mutation p.L90V 0.24 tolerated(0.37) benign(0.149) TCGA-66-2759-01 10 98127941 98127941 C T TLL2 Missense_Mutation p.M984I 0.18 deleterious(0.05) benign(0.174) TCGA-66-2759-01 11 1013970 1013970 C G MUC6 Missense_Mutation p.E2357D 0.36 unknown(0) TCGA-66-2759-01 11 113679872 113679872 C G USP28 Missense_Mutation p.E693Q 0.16 tolerated(0.1) possibly_damaging(0.722) TCGA-66-2759-01 11 113815332 113815332 C G HTR3B Silent p.L315L 0.09 TCGA-66-2759-01 11 114453569 114453569 C A NXPE4 Missense_Mutation p.V91L 0.54 tolerated(0.62) benign(0.019) TCGA-66-2759-01 11 118390362 118390362 C G KMT2A Missense_Mutation p.L3726V 0.13 benign(0.134) TCGA-66-2759-01 11 122931507 122931507 C G HSPA8 Splice_Site p.X69_splice 0.04 TCGA-66-2759-01 11 123777167 123777167 C A OR8D4 Missense_Mutation p.T10N 0.27 deleterious(0.03) benign(0.025) TCGA-66-2759-01 11 123777593 123777593 G T OR8D4 Missense_Mutation p.G152V 0.19 deleterious(0) probably_damaging(1) TCGA-66-2759-01 11 123777642 123777642 C T OR8D4 Silent p.F168F 0.32 TCGA-66-2759-01 11 124007928 124007928 C A VWA5A Missense_Mutation p.P611Q 0.11 deleterious(0.03) benign(0.175) TCGA-66-2759-01 11 124294691 124294691 G T OR8B4 Missense_Mutation p.P26H 0.27 deleterious_low_confidence(0) possibly_damaging(0.498) TCGA-66-2759-01 11 124440531 124440531 C G OR8A1 Silent p.L189L 0.22 TCGA-66-2759-01 11 124440627 124440627 C T OR8A1 Silent p.F221F 0.22 TCGA-66-2759-01 11 124481499 124481499 T C PANX3 Missense_Mutation p.L16P 0.14 deleterious(0) probably_damaging(0.998) TCGA-66-2759-01 11 124637400 124637400 C A MSANTD2 Missense_Mutation p.R399L 0.52 tolerated_low_confidence(0.32) benign(0.003) TCGA-66-2759-01 11 1257660 1257660 G A MUC5B Silent p.A975A 0.30 TCGA-66-2759-01 11 1467049 1467049 C T BRSK2 Missense_Mutation p.R426C 0.39 deleterious(0) probably_damaging(0.99) TCGA-66-2759-01 11 22225351 22225351 G T ANO5 Silent p.G14G 0.16 TCGA-66-2759-01 11 36614281 36614281 C G RAG2 Missense_Mutation p.E480Q 0.33 tolerated(0.11) probably_damaging(0.988) TCGA-66-2759-01 11 43421578 43421578 T C TTC17 Missense_Mutation p.M400T 0.24 tolerated(0.28) benign(0.108) TCGA-66-2759-01 11 46689361 46689361 G T ATG13 Missense_Mutation p.R392L 0.22 deleterious_low_confidence(0.01) benign(0.06) TCGA-66-2759-01 11 48510827 48510827 T C OR4A47 Silent p.I161I 0.24 TCGA-66-2759-01 11 5068517 5068517 C - OR52J3 Frame_Shift_Del p.P255Lfs*28 0.20 TCGA-66-2759-01 11 51515935 51515935 C A OR4C46 Silent p.V218V 0.27 TCGA-66-2759-01 11 5529258 5529258 G A UBQLN3 Missense_Mutation p.L511F 0.25 deleterious(0.05) benign(0.059) TCGA-66-2759-01 11 55432813 55432813 G C OR4C6 Missense_Mutation p.M57I 0.19 deleterious_low_confidence(0) benign(0.291) TCGA-66-2759-01 11 55587148 55587148 C T OR5D18 Missense_Mutation p.L15F 0.21 deleterious(0.03) benign(0.327) TCGA-66-2759-01 11 55657463 55657463 G T TRIM51 Missense_Mutation p.E269D 0.24 tolerated(0.05) benign(0.008) TCGA-66-2759-01 11 55681710 55681710 C T OR5W2 Missense_Mutation p.V117M 0.26 tolerated(0.06) benign(0.206) TCGA-66-2759-01 11 55904298 55904298 A G OR8J3 Silent p.V299V 0.28 TCGA-66-2759-01 11 56000245 56000245 C A OR5T2 Missense_Mutation p.Q139H 0.26 deleterious(0) probably_damaging(0.953) TCGA-66-2759-01 11 56310013 56310013 C A OR5M11 Missense_Mutation p.G241C 0.22 deleterious(0) probably_damaging(0.995) TCGA-66-2759-01 11 6423837 6423837 A G APBB1 Missense_Mutation p.L408P 0.19 deleterious(0.05) benign(0.01) TCGA-66-2759-01 11 65394885 65394885 G T PCNXL3 Silent p.A1178A 0.14 TCGA-66-2759-01 11 66618590 66618590 C T PC Missense_Mutation p.R715H 0.12 deleterious(0.01) benign(0.096) TCGA-66-2759-01 11 6912971 6912971 G A OR2D2 Missense_Mutation p.S254L 0.27 deleterious(0.02) probably_damaging(0.958) TCGA-66-2759-01 11 76062891 76062891 C G PRKRIR Missense_Mutation p.E435Q 0.10 tolerated(0.11) possibly_damaging(0.688) TCGA-66-2759-01 11 7723862 7723862 G T OVCH2 Missense_Mutation p.T102N 0.21 tolerated(0.32) benign(0.028) TCGA-66-2759-01 11 85435364 85435364 T C SYTL2 Silent p.V712V 0.58 TCGA-66-2759-01 11 89907064 89907064 G T NAALAD2 Nonsense_Mutation p.E495* 0.11 TCGA-66-2759-01 11 9225228 9225228 G T DENND5A Missense_Mutation p.Q310K 0.24 deleterious(0.03) probably_damaging(0.985) TCGA-66-2759-01 11 94730904 94730904 G C KDM4D Missense_Mutation p.R123P 0.12 deleterious(0) probably_damaging(0.954) TCGA-66-2759-01 12 1005368 1005368 G C WNK1 Silent p.V1905V 0.21 TCGA-66-2759-01 12 101873408 101873408 G T SPIC Missense_Mutation p.G49V 0.45 tolerated(0.14) benign(0.051) TCGA-66-2759-01 12 101873409 101873409 A T SPIC Silent p.G49G 0.44 TCGA-66-2759-01 12 102589768 102589768 C T PARPBP Missense_Mutation p.T480M 0.27 tolerated(0.08) benign(0.139) TCGA-66-2759-01 12 104067755 104067755 C A STAB2 Nonsense_Mutation p.C814* 0.14 TCGA-66-2759-01 12 106500180 106500180 G C NUAK1 Intron 0.35 TCGA-66-2759-01 12 107486612 107486612 C G CRY1 Missense_Mutation p.G43A 0.29 tolerated(0.21) probably_damaging(1) TCGA-66-2759-01 12 108589533 108589533 T G WSCD2 5'UTR 0.18 TCGA-66-2759-01 12 111748470 111748470 C T CUX2 Silent p.I628I 0.36 TCGA-66-2759-01 12 111926308 111926308 C A ATXN2 Missense_Mutation p.D898Y 0.18 probably_damaging(0.933) TCGA-66-2759-01 12 112321495 112321495 G C MAPKAPK5 Missense_Mutation p.K257N 0.22 deleterious(0) probably_damaging(0.986) TCGA-66-2759-01 12 112321523 112321523 G A MAPKAPK5 Missense_Mutation p.E267K 0.22 tolerated(0.22) possibly_damaging(0.643) TCGA-66-2759-01 12 113384716 113384716 T A OAS3 Missense_Mutation p.W269R 0.40 deleterious(0) probably_damaging(1) TCGA-66-2759-01 12 113812701 113812701 C T PLBD2 Silent p.L250L 0.12 TCGA-66-2759-01 12 11461606 11461606 G - PRB4 Frame_Shift_Del p.P104Hfs*153 0.11 TCGA-66-2759-01 12 123970353 123970353 C G RILPL1 Splice_Site p.X268_splice 0.22 TCGA-66-2759-01 12 129278719 129278719 A C SLC15A4 3'UTR 0.47 TCGA-66-2759-01 12 14633984 14633984 A C ATF7IP Missense_Mutation p.T1049P 0.34 tolerated_low_confidence(0.18) unknown(0) TCGA-66-2759-01 12 21377756 21377756 T C SLCO1B1 Silent p.Y616Y 0.48 TCGA-66-2759-01 12 21661455 21661455 G T GOLT1B Missense_Mutation p.G86C 0.32 deleterious(0) probably_damaging(1) TCGA-66-2759-01 12 31144836 31144836 C T TSPAN11 Missense_Mutation p.R250W 0.18 deleterious(0.02) benign(0.28) TCGA-66-2759-01 12 3389621 3389621 A G TSPAN9 Missense_Mutation p.K135R 0.35 tolerated(0.42) benign(0.026) TCGA-66-2759-01 12 42836533 42836534 - A PPHLN1 Frame_Shift_Ins p.A373Cfs*49 0.32 TCGA-66-2759-01 12 43822454 43822454 G A ADAMTS20 Missense_Mutation p.A1213V 0.48 tolerated(0.28) benign(0.12) TCGA-66-2759-01 12 5153871 5153871 G A KCNA5 Silent p.R186R 0.19 TCGA-66-2759-01 12 54799710 54799710 C A ITGA5 Missense_Mutation p.V303F 0.23 deleterious(0) benign(0.398) TCGA-66-2759-01 12 55524230 55524230 C T OR9K2 Silent p.S226S 0.23 TCGA-66-2759-01 12 66308699 66308699 C T HMGA2 Intron 0.26 TCGA-66-2759-01 12 68642464 68642464 G A IL22 3'UTR 0.22 TCGA-66-2759-01 12 75741445 75741445 T C GLIPR1L1 Missense_Mutation p.M155T 0.16 tolerated(0.79) benign(0.001) TCGA-66-2759-01 12 75804237 75804237 G A GLIPR1L2 Silent p.R86R 0.35 TCGA-66-2759-01 12 77222220 77222220 T C ZDHHC17 Missense_Mutation p.L364S 0.21 deleterious(0.02) benign(0.055) TCGA-66-2759-01 12 81205391 81205391 C A LIN7A Silent p.V185V 0.14 TCGA-66-2759-01 12 8376803 8376803 G T FAM90A1 Nonsense_Mutation p.C44* 0.23 TCGA-66-2759-01 12 992672 992672 G C WNK1 Missense_Mutation p.E1201Q 0.18 deleterious(0.03) possibly_damaging(0.8) TCGA-66-2759-01 13 100955223 100955223 C G PCCA Missense_Mutation p.Q419E 0.36 deleterious(0.01) benign(0.003) TCGA-66-2759-01 13 101763018 101763018 G C NALCN Missense_Mutation p.N772K 0.33 tolerated(0.95) benign(0.004) TCGA-66-2759-01 13 101881796 101881796 A G NALCN Missense_Mutation p.L525S 0.10 deleterious(0) probably_damaging(0.988) TCGA-66-2759-01 13 102527585 102527585 C A FGF14 Missense_Mutation p.M90I 0.27 tolerated(0.72) benign(0.016) TCGA-66-2759-01 13 110839513 110839513 G T COL4A1 Missense_Mutation p.P567Q 0.24 benign(0.05) TCGA-66-2759-01 13 114541079 114541079 G C GAS6 Missense_Mutation p.S184R 0.30 deleterious(0.04) probably_damaging(0.995) TCGA-66-2759-01 13 23913541 23913541 C G SACS Missense_Mutation p.E1492Q 0.57 possibly_damaging(0.587) TCGA-66-2759-01 13 28578046 28578046 G A FLT3 3'UTR 0.50 TCGA-66-2759-01 13 46641480 46641480 C T CPB2 Missense_Mutation p.V222M 0.14 deleterious(0) probably_damaging(0.983) TCGA-66-2759-01 13 50115024 50115024 T G RCBTB1 Missense_Mutation p.R481S 0.27 deleterious(0) benign(0.044) TCGA-66-2759-01 13 52682506 52682506 G A NEK5 Missense_Mutation p.P168S 0.43 deleterious(0) probably_damaging(0.998) TCGA-66-2759-01 14 103802453 103802453 G T EIF5 Silent p.T51T 0.58 TCGA-66-2759-01 14 106321889 106321889 G T IGHM Silent p.V115V 0.60 TCGA-66-2759-01 14 106610747 106610747 A G IGHV3-15 Missense_Mutation p.F9S 0.20 deleterious_low_confidence(0.02) benign(0.306) TCGA-66-2759-01 14 21360108 21360108 G A RNASE3 Missense_Mutation p.R88H 0.19 tolerated(0.22) possibly_damaging(0.501) TCGA-66-2759-01 14 21679612 21679612 C A HNRNPC Missense_Mutation p.G264W 0.27 deleterious(0) probably_damaging(0.959) TCGA-66-2759-01 14 24642575 24642575 G T REC8 Missense_Mutation p.M139I 0.42 tolerated(0.17) benign(0.018) TCGA-66-2759-01 14 35182136 35182136 G A CFL2 Missense_Mutation p.R146C 0.23 tolerated(0.08) benign(0.12) TCGA-66-2759-01 14 52734567 52734567 C A PTGDR Missense_Mutation p.T12N 0.67 tolerated(0.48) benign(0.255) TCGA-66-2759-01 14 94088624 94088624 C A UNC79 Missense_Mutation p.A1505D 0.60 deleterious_low_confidence(0) benign(0.024) TCGA-66-2759-01 14 94697620 94697620 G A PPP4R4 Missense_Mutation p.E162K 0.55 tolerated(0.13) benign(0.032) TCGA-66-2759-01 15 22956428 22956428 G C CYFIP1 Intron 0.35 TCGA-66-2759-01 15 23049066 23049066 C T NIPA1 Silent p.A251A 0.21 TCGA-66-2759-01 15 23410661 23410661 A T RP11-467N20.5 Silent p.S176S 0.26 TCGA-66-2759-01 15 24921553 24921553 T A NPAP1 Missense_Mutation p.L180H 0.49 tolerated(0.55) benign(0.194) TCGA-66-2759-01 15 25451434 25451434 G T SNORD115-20 RNA 0.16 TCGA-66-2759-01 15 25932883 25932883 G T ATP10A Silent p.A1086A 0.39 TCGA-66-2759-01 15 25966902 25966902 T A ATP10A Missense_Mutation p.Q422L 0.30 deleterious(0) possibly_damaging(0.846) TCGA-66-2759-01 15 27128547 27128547 C T GABRA5 Missense_Mutation p.P114S 0.38 tolerated(0.13) probably_damaging(1) TCGA-66-2759-01 15 33926842 33926842 G A RYR3 Missense_Mutation p.R1028H 0.17 probably_damaging(0.991) TCGA-66-2759-01 15 41377648 41377648 C A INO80 Missense_Mutation p.K264N 0.18 tolerated(0.1) possibly_damaging(0.687) TCGA-66-2759-01 15 42602892 42602892 A T GANC Missense_Mutation p.Y302F 0.24 benign(0.078) TCGA-66-2759-01 15 42839477 42839477 G C LRRC57 Silent p.L158L 0.44 TCGA-66-2759-01 15 43577058 43577058 C T TGM7 Missense_Mutation p.D320N 0.17 deleterious(0.04) benign(0.094) TCGA-66-2759-01 15 63004276 63004276 G C TLN2 Missense_Mutation p.K878N 0.32 deleterious(0.03) possibly_damaging(0.873) TCGA-66-2759-01 15 65759515 65759515 T C DPP8 Missense_Mutation p.K544R 0.38 tolerated(0.48) benign(0.083) TCGA-66-2759-01 15 73852191 73852191 G C C15orf60 Missense_Mutation p.Q245H 0.35 deleterious(0) probably_damaging(1) TCGA-66-2759-01 15 75722731 75722731 C G SIN3A 5'UTR 0.18 TCGA-66-2759-01 15 77241678 77241678 G C RCN2 3'UTR 0.24 TCGA-66-2759-01 15 86807662 86807662 G T AGBL1 Missense_Mutation p.K374N 0.44 deleterious(0.01) benign(0.133) TCGA-66-2759-01 15 97326950 97326950 C A SPATA8 Missense_Mutation p.S22Y 0.28 deleterious_low_confidence(0.03) possibly_damaging(0.781) TCGA-66-2759-01 16 15850288 15850288 C G MYH11 Silent p.L560L 0.53 TCGA-66-2759-01 16 16177255 16177264 GATTCAGAAT - ABCC1 Frame_Shift_Del p.Q718Lfs*20 0.13 TCGA-66-2759-01 16 18830965 18830965 A G SMG1 Silent p.A3251A 0.62 TCGA-66-2759-01 16 20489923 20489923 T G ACSM2A Missense_Mutation p.L402R 0.17 deleterious(0) possibly_damaging(0.893) TCGA-66-2759-01 16 2050399 2050399 C - ZNF598 Frame_Shift_Del p.V429Cfs*88 0.13 TCGA-66-2759-01 16 22237271 22237271 C G EEF2K Missense_Mutation p.S74C 0.33 tolerated_low_confidence(0.11) probably_damaging(0.935) TCGA-66-2759-01 16 23392036 23392036 C A SCNN1B Missense_Mutation p.P613T 0.18 deleterious(0) probably_damaging(1) TCGA-66-2759-01 16 25258570 25258570 A T ZKSCAN2 Missense_Mutation p.V316D 0.43 deleterious(0.02) benign(0.096) TCGA-66-2759-01 16 2868807 2868807 C T PRSS21 Silent p.R129R 0.35 TCGA-66-2759-01 16 3165286 3165286 G C ZNF205 Intron 0.28 TCGA-66-2759-01 16 3165574 3165574 G A ZNF205 Intron 0.25 TCGA-66-2759-01 16 3165589 3165589 G A ZNF205 Intron 0.20 TCGA-66-2759-01 16 3165878 3165878 G C ZNF205 Missense_Mutation p.R107T 0.25 deleterious(0.01) possibly_damaging(0.827) TCGA-66-2759-01 16 3166446 3166446 G A ZNF205 Missense_Mutation p.D128N 0.13 deleterious(0.01) probably_damaging(0.954) TCGA-66-2759-01 16 3166483 3166483 G A ZNF205 Missense_Mutation p.R140Q 0.19 tolerated(0.27) benign(0.042) TCGA-66-2759-01 16 3169513 3169513 G A ZNF205 Silent p.E284E 0.22 TCGA-66-2759-01 16 4745033 4745033 C T NUDT16L1 Silent p.N163N 0.18 TCGA-66-2759-01 16 48180233 48180233 C A ABCC12 Missense_Mutation p.V35L 0.21 tolerated(0.32) benign(0.001) TCGA-66-2759-01 16 48337093 48337093 G A LONP2 Missense_Mutation p.E558K 0.22 deleterious(0) possibly_damaging(0.492) TCGA-66-2759-01 16 50745180 50745180 A G NOD2 Missense_Mutation p.E453G 0.23 deleterious(0.03) possibly_damaging(0.752) TCGA-66-2759-01 16 51175872 51175872 G - SALL1 Frame_Shift_Del p.S88Afs*11 0.26 TCGA-66-2759-01 16 55903629 55903629 A T CES5A Missense_Mutation p.F178I 0.25 deleterious(0.01) possibly_damaging(0.874) TCGA-66-2759-01 16 57771087 57771087 C T KATNB1 5'UTR 0.34 TCGA-66-2759-01 16 67051 67051 C A WASH4P Silent p.L195L 0.15 TCGA-66-2759-01 16 67052 67052 C A WASH4P Splice_Site p.X195_splice 0.17 TCGA-66-2759-01 16 68849430 68849430 G C CDH1 Missense_Mutation p.E445Q 0.28 deleterious(0.01) probably_damaging(0.954) TCGA-66-2759-01 16 71061471 71061471 A T HYDIN Intron 0.12 TCGA-66-2759-01 16 71483060 71483060 T A ZNF23 Missense_Mutation p.S290C 0.22 tolerated(0.13) possibly_damaging(0.863) TCGA-66-2759-01 16 72821815 72821815 C A ZFHX3 Missense_Mutation p.D3454Y 0.23 unknown(0) TCGA-66-2759-01 16 75646400 75646400 T A ADAT1 Nonsense_Mutation p.K262* 0.25 TCGA-66-2759-01 16 76350215 76350215 G T CNTNAP4 Intron 0.33 TCGA-66-2759-01 16 76509861 76509861 G C CNTNAP4 Missense_Mutation p.G488R 0.11 deleterious(0.01) benign(0.354) TCGA-66-2759-01 16 76556094 76556094 A T CNTNAP4 Missense_Mutation p.T826S 0.18 tolerated(0.26) benign(0.035) TCGA-66-2759-01 16 84035944 84035944 G A NECAB2 Missense_Mutation p.R385Q 0.23 tolerated(0.25) benign(0.041) TCGA-66-2759-01 17 10348415 10348415 G A MYH4 Missense_Mutation p.H1782Y 0.53 deleterious(0) probably_damaging(0.999) TCGA-66-2759-01 17 10426914 10426914 T C MYH2 Missense_Mutation p.N1791D 0.46 deleterious(0) probably_damaging(0.933) TCGA-66-2759-01 17 14683282 14683282 T C AC005863.1 RNA 0.47 TCGA-66-2759-01 17 39658702 39658702 T G KRT13 Missense_Mutation p.M390L 0.06 tolerated(0.32) benign(0.009) TCGA-66-2759-01 17 39658791 39658791 A C KRT13 Missense_Mutation p.L360R 0.05 deleterious(0.01) probably_damaging(1) TCGA-66-2759-01 17 39767629 39767629 C G KRT16 Missense_Mutation p.E247Q 0.40 deleterious(0.01) probably_damaging(1) TCGA-66-2759-01 17 42230141 42230141 G T C17orf53 Missense_Mutation p.R482L 0.33 deleterious(0) possibly_damaging(0.511) TCGA-66-2759-01 17 48271336 48271336 C T COL1A1 Missense_Mutation p.V579M 0.43 unknown(0) TCGA-66-2759-01 17 48917584 48917584 C T WFIKKN2 Missense_Mutation p.A312V 0.53 tolerated(0.32) benign(0.001) TCGA-66-2759-01 17 51901916 51901916 A G KIF2B Missense_Mutation p.I508V 0.35 deleterious(0.04) probably_damaging(0.997) TCGA-66-2759-01 17 57134397 57134397 C G TRIM37 Missense_Mutation p.E346D 0.20 deleterious(0.03) probably_damaging(0.954) TCGA-66-2759-01 17 60759141 60759141 G A MRC2 Intron 0.27 TCGA-66-2759-01 17 7577536 7577536 T C TP53 Missense_Mutation p.R249G 0.40 deleterious(0) probably_damaging(0.991) TCGA-66-2759-01 17 76354708 76354708 G A SOCS3 Missense_Mutation p.P157S 0.39 tolerated(0.75) possibly_damaging(0.759) TCGA-66-2759-01 18 22048908 22048908 C G HRH4 Nonsense_Mutation p.S117* 0.48 TCGA-66-2759-01 18 22804463 22804463 C A ZNF521 Missense_Mutation p.C1140F 0.22 deleterious(0) benign(0.003) TCGA-66-2759-01 18 25593741 25593741 A G CDH2 Missense_Mutation p.F102S 0.13 deleterious(0.02) benign(0.422) TCGA-66-2759-01 18 28713956 28713956 C G DSC1 Missense_Mutation p.E672Q 0.42 tolerated(0.54) benign(0.048) TCGA-66-2759-01 18 30093301 30093301 A G WBP11P1 RNA 0.19 TCGA-66-2759-01 18 33272176 33272176 G A GALNT1 Silent p.S397S 0.12 TCGA-66-2759-01 18 43438727 43438727 C A EPG5 Nonsense_Mutation p.G2344* 0.30 TCGA-66-2759-01 18 51851222 51851222 A G STARD6 Missense_Mutation p.V168A 0.26 deleterious(0) possibly_damaging(0.765) TCGA-66-2759-01 18 55020104 55020104 C A ST8SIA3 Silent p.V9V 0.32 TCGA-66-2759-01 18 56274632 56274632 T G ALPK2 Missense_Mutation p.Q50P 0.28 deleterious(0.01) probably_damaging(0.948) TCGA-66-2759-01 18 59768385 59768385 A G PIGN Missense_Mutation p.V667A 0.25 deleterious(0.02) benign(0.046) TCGA-66-2759-01 18 61620595 61620595 G A HMSD 5'UTR 0.23 TCGA-66-2759-01 18 74620347 74620347 A T ZNF236 Missense_Mutation p.Q788L 0.36 deleterious(0.01) benign(0.066) TCGA-66-2759-01 18 9553390 9553390 G C PPP4R1 Missense_Mutation p.L741V 0.29 deleterious(0.01) possibly_damaging(0.806) TCGA-66-2759-01 19 10541750 10541750 G A PDE4A Intron 0.24 TCGA-66-2759-01 19 110963 110963 T A OR4F17 Missense_Mutation p.F95L 0.15 tolerated(0.07) probably_damaging(0.98) TCGA-66-2759-01 19 17531190 17531190 C T MVB12A Silent p.F53F 0.53 TCGA-66-2759-01 19 18279951 18279951 C G PIK3R2 Silent p.G678G 0.53 TCGA-66-2759-01 19 19308355 19308355 C T RFXANK Silent p.D121D 0.16 TCGA-66-2759-01 19 22952023 22952023 T A ZNF99 Missense_Mutation p.N36I 0.05 deleterious(0) probably_damaging(0.995) TCGA-66-2759-01 19 23542902 23542902 T C ZNF91 Missense_Mutation p.H960R 0.48 deleterious(0) probably_damaging(0.996) TCGA-66-2759-01 19 23544923 23544923 C A ZNF91 Missense_Mutation p.R286S 0.45 tolerated(0.08) benign(0.271) TCGA-66-2759-01 19 33439273 33439273 A G CEP89 Missense_Mutation p.V165A 0.22 tolerated(0.14) possibly_damaging(0.721) TCGA-66-2759-01 19 34302864 34302864 G A KCTD15 Intron 0.14 TCGA-66-2759-01 19 35175835 35175835 C G ZNF302 Missense_Mutation p.S298C 0.04 deleterious(0) probably_damaging(0.973) TCGA-66-2759-01 19 35175852 35175852 C G ZNF302 Missense_Mutation p.L304V 0.05 tolerated(0.13) possibly_damaging(0.885) TCGA-66-2759-01 19 35176241 35176241 C G ZNF302 3'UTR 0.07 TCGA-66-2759-01 19 36727715 36727715 G T ZNF146 Nonsense_Mutation p.E125* 0.21 TCGA-66-2759-01 19 39955614 39955614 G A SUPT5H Silent p.V267V 0.05 TCGA-66-2759-01 19 40433534 40433534 C T FCGBP Silent p.T245T 0.14 TCGA-66-2759-01 19 43371158 43371158 G A PSG1 3'Flank 0.10 TCGA-66-2759-01 19 51359544 51359544 A G KLK3 Missense_Mutation p.E32G 0.49 deleterious(0.02) probably_damaging(0.911) TCGA-66-2759-01 19 56321463 56321463 G A NLRP11 Silent p.I171I 0.53 TCGA-66-2759-01 19 56895142 56895142 G A ZNF582 3'UTR 0.53 TCGA-66-2759-01 19 6857207 6857207 G C VAV1 3'Flank 0.50 TCGA-66-2759-01 19 8999556 8999556 T A MUC16 Missense_Mutation p.K13540M 0.51 probably_damaging(1) TCGA-66-2759-01 1 103356059 103356059 C A COL11A1 Missense_Mutation p.G1435V 0.44 unknown(0) TCGA-66-2759-01 1 104122003 104122003 A G AMY2B Missense_Mutation p.I473V 0.19 tolerated(0.32) benign(0) TCGA-66-2759-01 1 118550726 118550726 A T SPAG17 Missense_Mutation p.C1510S 0.14 deleterious(0) probably_damaging(0.999) TCGA-66-2759-01 1 11863045 11863045 C G MTHFR Missense_Mutation p.E43D 0.21 tolerated(0.45) benign(0.004) TCGA-66-2759-01 1 12785627 12785627 G A AADACL3 Silent p.E239E 0.20 TCGA-66-2759-01 1 142713139 142713139 A G RP11-417J8.6 RNA 0.45 TCGA-66-2759-01 1 145508257 145508257 G C RBM8A Missense_Mutation p.D60H 0.58 deleterious(0.03) possibly_damaging(0.85) TCGA-66-2759-01 1 152327971 152327971 C T FLG2 Missense_Mutation p.R764K 0.54 unknown(0) TCGA-66-2759-01 1 153177529 153177529 G A LELP1 3'UTR 0.65 TCGA-66-2759-01 1 158517648 158517648 C T OR6Y1 Missense_Mutation p.S83N 0.62 deleterious(0.03) benign(0.091) TCGA-66-2759-01 1 160064721 160064721 C A IGSF8 Missense_Mutation p.C127F 0.59 deleterious(0) probably_damaging(0.999) TCGA-66-2759-01 1 160093179 160093179 C T ATP1A2 Silent p.A118A 0.65 TCGA-66-2759-01 1 169437891 169437891 G T SLC19A2 Missense_Mutation p.T405K 0.64 deleterious(0) probably_damaging(0.999) TCGA-66-2759-01 1 179520143 179520143 C A NPHS2 3'UTR 0.82 TCGA-66-2759-01 1 184690515 184690515 C T EDEM3 Missense_Mutation p.G287R 0.51 deleterious(0) probably_damaging(1) TCGA-66-2759-01 1 186643895 186643895 C G PTGS2 Splice_Site p.X469_splice 0.67 TCGA-66-2759-01 1 197070287 197070287 G C ASPM Missense_Mutation p.F2698L 0.70 tolerated(0.46) benign(0.006) TCGA-66-2759-01 1 197704840 197704840 C A DENND1B Intron 0.69 TCGA-66-2759-01 1 20141334 20141334 C G RNF186 Missense_Mutation p.K87N 0.19 deleterious(0) possibly_damaging(0.892) TCGA-66-2759-01 1 205496951 205496951 C T CDK18 Silent p.L283L 0.10 TCGA-66-2759-01 1 206331026 206331026 C T CTSE Silent p.F344F 0.67 TCGA-66-2759-01 1 216498934 216498934 G C USH2A Missense_Mutation p.L286V 0.52 benign(0.014) TCGA-66-2759-01 1 222717104 222717104 C T HHIPL2 Missense_Mutation p.R250H 0.12 deleterious(0.01) possibly_damaging(0.69) TCGA-66-2759-01 1 228468283 228468283 C T OBSCN Silent p.R3090R 0.17 TCGA-66-2759-01 1 23111401 23111401 G A EPHB2 Missense_Mutation p.E215K 0.25 deleterious(0.01) possibly_damaging(0.831) TCGA-66-2759-01 1 237787170 237787170 G T RYR2 Nonsense_Mutation p.G2008* 0.63 TCGA-66-2759-01 1 248685215 248685215 A G OR2G6 Missense_Mutation p.K90E 0.08 deleterious(0) probably_damaging(0.927) TCGA-66-2759-01 1 28661072 28661072 G T MED18 Missense_Mutation p.R73L 0.21 deleterious(0) probably_damaging(0.982) TCGA-66-2759-01 1 32050834 32050834 C T TINAGL1 Nonsense_Mutation p.R314* 0.38 TCGA-66-2759-01 1 35484800 35484800 A G ZMYM6 Intron 0.62 TCGA-66-2759-01 1 37948776 37948776 G A ZC3H12A Missense_Mutation p.G455E 0.38 tolerated(0.1) benign(0.103) TCGA-66-2759-01 1 40661370 40661370 G A RLF Missense_Mutation p.E181K 0.42 deleterious(0) probably_damaging(0.971) TCGA-66-2759-01 1 42925442 42925442 G C PPCS Missense_Mutation p.E261Q 0.34 tolerated(0.52) benign(0.21) TCGA-66-2759-01 1 44438364 44438364 C G DPH2 3'UTR 0.38 TCGA-66-2759-01 1 46972718 46972718 C A DMBX1 Missense_Mutation p.H12Q 0.19 deleterious(0.04) probably_damaging(0.992) TCGA-66-2759-01 1 53279333 53279333 C T ZYG11B Silent p.A607A 0.13 TCGA-66-2759-01 1 54262595 54262595 G A NDC1 Missense_Mutation p.P482L 0.46 deleterious(0.01) probably_damaging(0.964) TCGA-66-2759-01 1 66064402 66064402 G T LEPR Silent p.S303S 0.46 TCGA-66-2759-01 1 66102258 66102258 T A LEPR Missense_Mutation p.L1020M 0.21 tolerated(0.11) possibly_damaging(0.541) TCGA-66-2759-01 1 67724363 67724363 A C IL23R Missense_Mutation p.N481T 0.42 tolerated(0.23) possibly_damaging(0.859) TCGA-66-2759-01 1 75036970 75036970 C T C1orf173 Missense_Mutation p.R1475Q 0.36 tolerated(0.06) benign(0.384) TCGA-66-2759-01 1 75102088 75102088 A G C1orf173 Missense_Mutation p.M160T 0.18 deleterious(0.03) benign(0.331) TCGA-66-2759-01 1 75229854 75229854 T G TYW3 3'UTR 0.20 TCGA-66-2759-01 1 7845624 7845624 C G PER3 Silent p.L84L 0.18 TCGA-66-2759-01 1 93712473 93712473 G A CCDC18 Missense_Mutation p.E1107K 0.36 deleterious(0.02) possibly_damaging(0.61) TCGA-66-2759-01 1 94466451 94466451 C A ABCA4 Silent p.L2140L 0.19 TCGA-66-2759-01 1 9811556 9811556 G A CLSTN1 Silent p.D208D 0.11 TCGA-66-2759-01 20 1285934 1285934 G A SNPH Missense_Mutation p.A241T 0.15 deleterious(0.04) benign(0.005) TCGA-66-2759-01 20 17639652 17639652 T A RRBP1 Intron 0.50 TCGA-66-2759-01 20 29623133 29623133 C A FRG1B 5'UTR 0.04 TCGA-66-2759-01 20 33328472 33328472 C A NCOA6 Missense_Mutation p.G1863V 0.44 benign(0.157) TCGA-66-2759-01 20 35443639 35443639 C T SOGA1 Missense_Mutation p.G736R 0.21 tolerated(0.08) benign(0.177) TCGA-66-2759-01 20 35929643 35929643 G A MANBAL 5'UTR 0.24 TCGA-66-2759-01 20 42969916 42969916 G C R3HDML Missense_Mutation p.M114I 0.35 tolerated(0.09) benign(0.068) TCGA-66-2759-01 20 44037115 44037115 C G DBNDD2 Missense_Mutation p.P105R 0.13 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-66-2759-01 20 44869816 44869816 G T CDH22 Silent p.I112I 0.28 TCGA-66-2759-01 20 61528146 61528146 C T DIDO1 Silent p.R597R 0.19 TCGA-66-2759-01 20 62196785 62196785 G A HELZ2 Silent p.R1130R 0.40 TCGA-66-2759-01 20 62737593 62737593 C A NPBWR2 Missense_Mutation p.G198W 0.23 tolerated(0.11) probably_damaging(0.998) TCGA-66-2759-01 20 9520247 9520247 C A PAK7 Silent p.R674R 0.46 TCGA-66-2759-01 20 9538334 9538334 G T PAK7 Missense_Mutation p.A555D 0.43 deleterious(0) probably_damaging(0.999) TCGA-66-2759-01 21 15591942 15591942 T C RBM11 Missense_Mutation p.F52S 0.66 deleterious(0) probably_damaging(0.999) TCGA-66-2759-01 21 33074095 33074095 G T SCAF4 Silent p.G198G 0.43 TCGA-66-2759-01 22 16267005 16267005 C A POTEH Nonsense_Mutation p.G482* 0.06 TCGA-66-2759-01 22 16287437 16287437 C A POTEH Missense_Mutation p.G150V 0.19 deleterious(0) possibly_damaging(0.721) TCGA-66-2759-01 22 17073497 17073497 G C CCT8L2 5'UTR 0.32 TCGA-66-2759-01 22 19839124 19839124 C G C22orf29 Missense_Mutation p.E221Q 0.28 deleterious(0) benign(0.171) TCGA-66-2759-01 22 32756325 32756325 C T RFPL3 Nonsense_Mutation p.Q154* 0.28 TCGA-66-2759-01 22 35942983 35942983 C T RASD2 Missense_Mutation p.R43C 0.25 deleterious(0) probably_damaging(0.973) TCGA-66-2759-01 22 41745268 41745268 C T ZC3H7B Silent p.F637F 0.30 TCGA-66-2759-01 2 102955449 102955449 C G IL1RL1 Missense_Mutation p.L72V 0.49 deleterious(0) probably_damaging(1) TCGA-66-2759-01 2 107007474 107007474 T A PLGLA RNA 0.14 TCGA-66-2759-01 2 11758655 11758655 G A GREB1 Silent p.S1218S 0.24 TCGA-66-2759-01 2 120125191 120125191 G T DBI Intron 0.15 TCGA-66-2759-01 2 120712821 120712821 G - PTPN4 Frame_Shift_Del p.D635Mfs*9 0.16 TCGA-66-2759-01 2 136579675 136579675 G A LCT Intron 0.42 TCGA-66-2759-01 2 143642976 143642976 C A KYNU Missense_Mutation p.Q14K 0.17 tolerated(0.54) benign(0) TCGA-66-2759-01 2 1488494 1488494 G A TPO Missense_Mutation p.A489T 0.13 deleterious(0) probably_damaging(0.999) TCGA-66-2759-01 2 155115534 155115534 G T GALNT13 Missense_Mutation p.R286S 0.40 deleterious(0.02) possibly_damaging(0.819) TCGA-66-2759-01 2 155566273 155566273 C A KCNJ3 Missense_Mutation p.S287R 0.14 tolerated(0.12) possibly_damaging(0.797) TCGA-66-2759-01 2 158272468 158272468 C A CYTIP Missense_Mutation p.E267D 0.16 tolerated(0.21) probably_damaging(0.996) TCGA-66-2759-01 2 163279922 163279922 G C KCNH7 Missense_Mutation p.P693R 0.12 deleterious(0) probably_damaging(0.999) TCGA-66-2759-01 2 168105946 168105946 T G XIRP2 Missense_Mutation p.C2682G 0.12 benign(0.004) TCGA-66-2759-01 2 168726198 168726198 C T B3GALT1 Missense_Mutation p.R217C 0.36 deleterious(0.04) possibly_damaging(0.892) TCGA-66-2759-01 2 170019060 170019060 T C LRP2 Missense_Mutation p.N3937D 0.51 benign(0.12) TCGA-66-2759-01 2 170063381 170063381 G A LRP2 Silent p.I2283I 0.50 TCGA-66-2759-01 2 176794922 176794922 A C KIAA1715 Missense_Mutation p.L354V 0.18 tolerated(0.32) benign(0.002) TCGA-66-2759-01 2 176996059 176996059 C T HOXD8 Nonsense_Mutation p.R198* 0.18 TCGA-66-2759-01 2 179599491 179599491 A G TTN Missense_Mutation p.C5054R 0.45 TCGA-66-2759-01 2 179634798 179634798 A C TTN Missense_Mutation p.L2877R 0.42 TCGA-66-2759-01 2 179659273 179659273 T C TTN Silent p.K417K 0.16 TCGA-66-2759-01 2 185801309 185801309 C A ZNF804A Missense_Mutation p.P396T 0.46 tolerated(0.23) benign(0.329) TCGA-66-2759-01 2 187693061 187693061 C T ZSWIM2 Missense_Mutation p.V518I 0.21 tolerated(0.21) benign(0.025) TCGA-66-2759-01 2 197183429 197183429 C A HECW2 Missense_Mutation p.D729Y 0.50 tolerated_low_confidence(0.27) benign(0.029) TCGA-66-2759-01 2 20132098 20132098 T C WDR35 Missense_Mutation p.I934M 0.15 deleterious(0) possibly_damaging(0.703) TCGA-66-2759-01 2 202900096 202900096 G T FZD7 Silent p.L242L 0.18 TCGA-66-2759-01 2 207027298 207027298 C T EEF1B2 Silent p.C161C 0.06 TCGA-66-2759-01 2 207169471 207169471 T A ZDBF2 Silent p.T73T 0.56 TCGA-66-2759-01 2 209191056 209191056 A G PIKFYVE Missense_Mutation p.K1174R 0.52 tolerated(0.23) benign(0.001) TCGA-66-2759-01 2 211342491 211342491 G A CPS1 Splice_Site p.X1_splice 0.20 TCGA-66-2759-01 2 214878777 214878777 C A SPAG16 Silent p.T501T 0.18 TCGA-66-2759-01 2 228110660 228110660 C T COL4A3 Intron 0.24 TCGA-66-2759-01 2 233390967 233390967 G A CHRND Silent p.L14L 0.36 TCGA-66-2759-01 2 234070367 234070367 T A INPP5D Intron 0.45 TCGA-66-2759-01 2 238661985 238661985 A T LRRFIP1 Nonsense_Mutation p.K173* 0.15 TCGA-66-2759-01 2 242035676 242035676 T A MTERFD2 Nonsense_Mutation p.R295* 0.29 TCGA-66-2759-01 2 242106497 242106497 C G PPP1R7 Intron 0.27 TCGA-66-2759-01 2 242128059 242128059 C G ANO7 Silent p.L11L 0.33 TCGA-66-2759-01 2 242192406 242192406 G A HDLBP Silent p.F446F 0.14 TCGA-66-2759-01 2 27741665 27741665 G T GCKR Missense_Mutation p.R478L 0.18 tolerated(0.63) benign(0.239) TCGA-66-2759-01 2 32820187 32820187 G T BIRC6 Missense_Mutation p.A4530S 0.33 benign(0.004) TCGA-66-2759-01 2 43768330 43768330 C G THADA Missense_Mutation p.E1078Q 0.24 tolerated(0.12) benign(0.213) TCGA-66-2759-01 2 71357369 71357369 C A MCEE 5'Flank 0.25 TCGA-66-2759-01 2 74043430 74043430 C T C2orf78 Silent p.L694L 0.42 TCGA-66-2759-01 2 74386349 74386349 C - MOB1A Frame_Shift_Del p.A148Qfs*5 0.11 TCGA-66-2759-01 2 74789483 74789483 G C M1AP Missense_Mutation p.A381G 0.25 deleterious(0) possibly_damaging(0.705) TCGA-66-2759-01 2 79313628 79313628 G T REG1B Silent p.L62L 0.18 TCGA-66-2759-01 2 80529460 80529460 G A LRRTM1 Silent p.N495N 0.21 TCGA-66-2759-01 2 80529904 80529904 G T LRRTM1 Nonsense_Mutation p.Y347* 0.35 TCGA-66-2759-01 2 80530704 80530704 G A LRRTM1 Missense_Mutation p.R81C 0.17 deleterious(0.02) possibly_damaging(0.451) TCGA-66-2759-01 2 89103982 89103982 G C ANKRD36BP2 RNA 0.33 TCGA-66-2759-01 2 89339817 89339817 G T IGKV1-12 Missense_Mutation p.S85R 0.21 deleterious(0.05) possibly_damaging(0.47) TCGA-66-2759-01 3 101535666 101535666 G T NXPE3 Missense_Mutation p.G317V 0.08 tolerated(0.27) benign(0.19) TCGA-66-2759-01 3 108476104 108476104 G - RETNLB 5'UTR 0.19 TCGA-66-2759-01 3 111632246 111632246 C T PHLDB2 Silent p.T472T 0.21 TCGA-66-2759-01 3 113524219 113524219 G C ATP6V1A Missense_Mutation p.K536N 0.18 deleterious(0) probably_damaging(1) TCGA-66-2759-01 3 118865502 118865502 A G C3orf30 Missense_Mutation p.R156G 0.21 tolerated(0.39) probably_damaging(0.943) TCGA-66-2759-01 3 127327752 127327752 C T MCM2 Silent p.V438V 0.15 TCGA-66-2759-01 3 13916528 13916528 C T WNT7A Missense_Mutation p.E72K 0.36 deleterious(0) probably_damaging(0.998) TCGA-66-2759-01 3 139236302 139236302 T A RBP1 3'UTR 0.15 TCGA-66-2759-01 3 147114007 147114007 A G ZIC4 Missense_Mutation p.L157P 0.48 deleterious(0.03) possibly_damaging(0.694) TCGA-66-2759-01 3 147128194 147128194 G T ZIC1 Missense_Mutation p.D99Y 0.13 deleterious(0) probably_damaging(0.968) TCGA-66-2759-01 3 148459455 148459455 T G AGTR1 Missense_Mutation p.I211M 0.15 deleterious(0.04) probably_damaging(0.998) TCGA-66-2759-01 3 151012946 151012946 G A GPR87 Missense_Mutation p.P30S 0.08 tolerated(0.46) benign(0) TCGA-66-2759-01 3 154864963 154864963 C G MME Missense_Mutation p.P483A 0.05 deleterious(0) benign(0.443) TCGA-66-2759-01 3 155200211 155200211 C T PLCH1 Missense_Mutation p.A1210T 0.21 tolerated_low_confidence(1) benign(0.001) TCGA-66-2759-01 3 160155726 160155726 A G TRIM59 3'UTR 0.12 TCGA-66-2759-01 3 164906409 164906409 C A SLITRK3 Missense_Mutation p.G737V 0.11 deleterious(0) possibly_damaging(0.855) TCGA-66-2759-01 3 164906410 164906410 C T SLITRK3 Missense_Mutation p.G737S 0.11 tolerated(0.13) benign(0.388) TCGA-66-2759-01 3 165547936 165547936 C G BCHE Missense_Mutation p.D296H 0.14 tolerated(0.1) benign(0.077) TCGA-66-2759-01 3 167248946 167248946 C A WDR49 Missense_Mutation p.M373I 0.14 tolerated(0.27) benign(0.033) TCGA-66-2759-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.26 deleterious(0.02) probably_damaging(0.959) TCGA-66-2759-01 3 180327770 180327770 G C TTC14 Missense_Mutation p.E585Q 0.02 deleterious(0.03) unknown(0) TCGA-66-2759-01 3 180630511 180630511 G T FXR1 Missense_Mutation p.G13V 0.16 deleterious(0) probably_damaging(0.915) TCGA-66-2759-01 3 182789018 182789018 C G MCCC1 Missense_Mutation p.V207L 0.19 deleterious(0.01) possibly_damaging(0.802) TCGA-66-2759-01 3 182948794 182948794 C A MCF2L2 Missense_Mutation p.R625L 0.14 deleterious(0.01) benign(0.339) TCGA-66-2759-01 3 186358324 186358324 C A FETUB Silent p.A25A 0.23 TCGA-66-2759-01 3 186980461 186980461 G T MASP1 Silent p.T95T 0.18 TCGA-66-2759-01 3 187419842 187419842 G C RTP2 Missense_Mutation p.D25E 0.19 deleterious(0.03) possibly_damaging(0.835) TCGA-66-2759-01 3 188584118 188584118 T G LPP Missense_Mutation p.F514C 0.19 deleterious(0) probably_damaging(1) TCGA-66-2759-01 3 194118433 194118433 C T GP5 Silent p.Q193Q 0.13 TCGA-66-2759-01 3 194118476 194118476 C T GP5 Missense_Mutation p.G179E 0.15 tolerated(0.35) benign(0.168) TCGA-66-2759-01 3 195605216 195605216 G A TNK2 Silent p.A451A 0.26 TCGA-66-2759-01 3 3095514 3095514 A G CNTN4 Silent p.Q945Q 0.38 TCGA-66-2759-01 3 3133797 3133797 A G IL5RA Intron 0.18 TCGA-66-2759-01 3 42949583 42949583 C A ZNF662 Missense_Mutation p.Q54K 0.49 deleterious(0.01) benign(0.022) TCGA-66-2759-01 3 44839159 44839159 C T KIF15 Silent p.F322F 0.50 TCGA-66-2759-01 3 46491504 46491504 C T LTF Silent p.K299K 0.19 TCGA-66-2759-01 3 47289509 47289509 A T KIF9 Missense_Mutation p.L376Q 0.48 deleterious(0.02) probably_damaging(0.998) TCGA-66-2759-01 3 48604105 48604105 C T COL7A1 Silent p.E2764E 0.50 TCGA-66-2759-01 3 49152898 49152898 C - USP19 Frame_Shift_Del p.E621Nfs*21 0.33 TCGA-66-2759-01 3 50313140 50313140 G A LSMEM2 5'Flank 0.29 TCGA-66-2759-01 3 52476800 52476800 G C SEMA3G Missense_Mutation p.S80C 0.56 deleterious(0.01) probably_damaging(1) TCGA-66-2759-01 3 95374450 95374450 C T MTHFD2P1 RNA 0.14 TCGA-66-2759-01 3 97868308 97868308 C A OR5H14 Missense_Mutation p.L27M 0.18 deleterious(0.01) possibly_damaging(0.895) TCGA-66-2759-01 3 9934715 9934715 C A JAGN1 Missense_Mutation p.A69D 0.18 tolerated(0.26) possibly_damaging(0.462) TCGA-66-2759-01 3 99514435 99514435 C A COL8A1 Missense_Mutation p.P564T 0.59 deleterious(0.02) unknown(0) TCGA-66-2759-01 4 100774445 100774445 G C DAPP1 Silent p.R143R 0.31 TCGA-66-2759-01 4 106647744 106647744 C A GSTCD Silent p.I301I 0.29 TCGA-66-2759-01 4 111398008 111398008 G C ENPEP Missense_Mutation p.E146D 0.15 tolerated(0.6) benign(0.094) TCGA-66-2759-01 4 114279820 114279820 C T ANK2 Missense_Mutation p.P3349L 0.21 probably_damaging(1) TCGA-66-2759-01 4 115749013 115749013 G T NDST4 Missense_Mutation p.L860M 0.24 deleterious(0.02) probably_damaging(0.973) TCGA-66-2759-01 4 122744726 122744726 C G CCNA2 Missense_Mutation p.A20P 0.19 deleterious_low_confidence(0.02) benign(0.042) TCGA-66-2759-01 4 159573058 159573058 G T RXFP1 Missense_Mutation p.G709C 0.13 deleterious(0.01) benign(0.353) TCGA-66-2759-01 4 164050062 164050062 C T NAF1 Missense_Mutation p.G491E 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-66-2759-01 4 186085284 186085284 C A KIAA1430 Missense_Mutation p.R457L 0.24 deleterious(0) probably_damaging(0.998) TCGA-66-2759-01 4 20255601 20255601 C T SLIT2 Missense_Mutation p.R55C 0.16 deleterious(0.01) possibly_damaging(0.906) TCGA-66-2759-01 4 39875994 39875994 C G PDS5A Missense_Mutation p.G731A 0.05 deleterious(0.01) probably_damaging(0.997) TCGA-66-2759-01 4 40339267 40339267 G A CHRNA9 Missense_Mutation p.R84H 0.31 deleterious(0.02) probably_damaging(0.997) TCGA-66-2759-01 4 44176896 44176896 G T KCTD8 Missense_Mutation p.Q445K 0.54 deleterious(0.01) benign(0.028) TCGA-66-2759-01 4 55593614 55593614 T A KIT Silent p.V560V 0.15 TCGA-66-2759-01 4 57676227 57676227 G A SPINK2 3'UTR 0.57 TCGA-66-2759-01 4 85750301 85750301 G C WDFY3 Nonsense_Mutation p.S271* 0.41 TCGA-66-2759-01 4 88731824 88731824 A G IBSP Missense_Mutation p.T105A 0.15 tolerated(0.3) benign(0.022) TCGA-66-2759-01 4 89363384 89363384 A G HERC6 Splice_Site p.X948_splice 0.44 TCGA-66-2759-01 4 89591092 89591092 G A HERC3 Missense_Mutation p.R572K 0.49 tolerated(1) benign(0) TCGA-66-2759-01 4 96762577 96762577 G - PDHA2 3'UTR 0.56 TCGA-66-2759-01 5 10390501 10390501 T C MARCH6 Silent p.C155C 0.09 TCGA-66-2759-01 5 129019847 129019847 A T ADAMTS19 Missense_Mutation p.H894L 0.14 deleterious(0.03) probably_damaging(0.99) TCGA-66-2759-01 5 131531134 131531134 C G P4HA2 Missense_Mutation p.D471H 0.09 tolerated(0.18) probably_damaging(1) TCGA-66-2759-01 5 140558302 140558302 C A PCDHB8 Silent p.V229V 0.06 TCGA-66-2759-01 5 140590088 140590088 G A PCDHB12 Missense_Mutation p.G537S 0.28 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-66-2759-01 5 140724442 140724442 T C PCDHGA3 Missense_Mutation p.L281P 0.07 deleterious_low_confidence(0.01) benign(0.141) TCGA-66-2759-01 5 140734863 140734863 C A PCDHGA4 Silent p.L32L 0.44 TCGA-66-2759-01 5 145719834 145719834 G A POU4F3 Missense_Mutation p.A282T 0.18 tolerated(0.07) benign(0.429) TCGA-66-2759-01 5 150929057 150929057 G A FAT2 Nonsense_Mutation p.Q1530* 0.34 TCGA-66-2759-01 5 158141174 158141174 C A EBF1 Missense_Mutation p.R381M 0.11 deleterious(0) probably_damaging(0.994) TCGA-66-2759-01 5 159680579 159680579 C G CCNJL Missense_Mutation p.G372R 0.19 deleterious(0.04) benign(0.379) TCGA-66-2759-01 5 160837994 160837994 C A GABRB2 Missense_Mutation p.L176F 0.08 deleterious(0) probably_damaging(0.992) TCGA-66-2759-01 5 180043372 180043372 C T FLT4 Missense_Mutation p.G1072S 0.33 deleterious(0) probably_damaging(1) TCGA-66-2759-01 5 180056733 180056733 G C FLT4 Nonsense_Mutation p.S260* 0.21 TCGA-66-2759-01 5 180474980 180474980 G A BTNL9 Missense_Mutation p.V55M 0.34 deleterious(0.01) probably_damaging(0.978) TCGA-66-2759-01 5 24535829 24535829 G C CDH10 Missense_Mutation p.S210C 0.10 deleterious(0.01) probably_damaging(0.986) TCGA-66-2759-01 5 32390503 32390503 C G ZFR Missense_Mutation p.E674Q 0.24 tolerated(0.05) unknown(0) TCGA-66-2759-01 5 35954348 35954348 C T UGT3A1 Missense_Mutation p.V510M 0.29 deleterious(0.03) possibly_damaging(0.517) TCGA-66-2759-01 5 38496550 38496550 C T LIFR Missense_Mutation p.V607I 0.20 deleterious(0) probably_damaging(0.994) TCGA-66-2759-01 5 39364607 39364607 G T C9 5'UTR 0.22 TCGA-66-2759-01 5 40945391 40945391 G T C7 Missense_Mutation p.R220L 0.25 tolerated(0.29) benign(0.019) TCGA-66-2759-01 5 41153960 41153960 C G C6 Missense_Mutation p.G748R 0.24 tolerated(0.3) benign(0.01) TCGA-66-2759-01 5 52340858 52340858 A T ITGA2 Missense_Mutation p.E108V 0.23 deleterious(0) probably_damaging(0.973) TCGA-66-2759-01 5 5462573 5462573 A G KIAA0947 Silent p.P1042P 0.26 TCGA-66-2759-01 5 7868063 7868063 A G FASTKD3 Missense_Mutation p.L45S 0.13 tolerated(0.11) benign(0) TCGA-66-2759-01 5 7868237 7868237 A C FASTKD3 5'UTR 0.28 TCGA-66-2759-01 5 90055301 90055301 A T GPR98 Missense_Mutation p.I4006F 0.16 benign(0.05) TCGA-66-2759-01 6 100369067 100369067 C - MCHR2 Frame_Shift_Del p.V258* 0.09 TCGA-66-2759-01 6 100838798 100838798 G T SIM1 Missense_Mutation p.N580K 0.53 tolerated_low_confidence(0.08) benign(0.096) TCGA-66-2759-01 6 100838801 100838801 C T SIM1 Silent p.E579E 0.15 TCGA-66-2759-01 6 102337543 102337543 C T GRIK2 Missense_Mutation p.A518V 0.18 deleterious(0) benign(0.064) TCGA-66-2759-01 6 109321750 109321750 C T SESN1 Missense_Mutation p.E225K 0.10 deleterious(0) possibly_damaging(0.803) TCGA-66-2759-01 6 109757363 109757363 T C PPIL6 Missense_Mutation p.I59V 0.77 tolerated(1) benign(0.001) TCGA-66-2759-01 6 117248364 117248364 C T RFX6 Missense_Mutation p.P687L 0.11 tolerated_low_confidence(0.07) benign(0.06) TCGA-66-2759-01 6 126661455 126661455 G C CENPW Missense_Mutation p.Q12H 0.57 tolerated_low_confidence(0.48) benign(0) TCGA-66-2759-01 6 135769594 135769594 T C AHI1 Missense_Mutation p.N487S 0.10 tolerated(0.06) possibly_damaging(0.526) TCGA-66-2759-01 6 136934373 136934373 C T MAP3K5 Missense_Mutation p.R767H 0.08 deleterious(0.02) probably_damaging(0.996) TCGA-66-2759-01 6 142758629 142758631 GCA - GPR126 In_Frame_Del p.Q1127del 0.68 TCGA-66-2759-01 6 16290709 16290709 T C GMPR Silent p.F238F 0.42 TCGA-66-2759-01 6 20212467 20212467 C T MBOAT1 5'UTR 0.33 TCGA-66-2759-01 6 27860915 27860915 C T HIST1H2AM Missense_Mutation p.G5S 0.31 deleterious_low_confidence(0.03) unknown(0) TCGA-66-2759-01 6 27861469 27861469 G A HIST1H2BO Missense_Mutation p.E77K 0.37 deleterious_low_confidence(0.04) possibly_damaging(0.904) TCGA-66-2759-01 6 28213023 28213023 A G ZKSCAN4 Silent p.I503I 0.41 TCGA-66-2759-01 6 28297527 28297527 C A ZSCAN31 Intron 0.20 TCGA-66-2759-01 6 29571455 29571455 C T GABBR1 Silent p.Q917Q 0.21 TCGA-66-2759-01 6 30610730 30610730 G A ATAT1 Missense_Mutation p.A292T 0.12 deleterious(0.04) possibly_damaging(0.532) TCGA-66-2759-01 6 32023670 32023670 C A TNXB Nonsense_Mutation p.E2809* 0.16 TCGA-66-2759-01 6 33638469 33638469 G T ITPR3 Silent p.A821A 0.20 TCGA-66-2759-01 6 35423605 35423605 G T FANCE Silent p.P110P 0.20 TCGA-66-2759-01 6 38838312 38838312 C T DNAH8 Missense_Mutation p.P2105S 0.43 possibly_damaging(0.87) TCGA-66-2759-01 6 38913256 38913256 G A DNAH8 Silent p.L3790L 0.32 TCGA-66-2759-01 6 39290233 39290233 A G KCNK16 Silent p.G28G 0.21 TCGA-66-2759-01 6 4131009 4131009 G A ECI2 Silent p.L102L 0.14 TCGA-66-2759-01 6 46659204 46659204 G T TDRD6 Silent p.V1113V 0.40 TCGA-66-2759-01 6 52945894 52945894 C T FBXO9 Missense_Mutation p.S189L 0.38 deleterious(0) probably_damaging(1) TCGA-66-2759-01 6 55216280 55216280 G T GFRAL Missense_Mutation p.Q200H 0.17 deleterious(0) probably_damaging(0.992) TCGA-66-2759-01 6 57472429 57472429 A G PRIM2 3'UTR 0.11 TCGA-66-2759-01 6 656563 656563 C A HUS1B Missense_Mutation p.V128L 0.16 deleterious(0.03) benign(0.317) TCGA-66-2759-01 6 74104640 74104640 C T DDX43 Silent p.H4H 0.17 TCGA-66-2759-01 6 76388391 76388391 C T SENP6 Silent p.F647F 0.61 TCGA-66-2759-01 7 100549851 100549851 C T MUC3A Silent p.I144I 0.11 TCGA-66-2759-01 7 107824691 107824691 C T NRCAM Silent p.T766T 0.16 TCGA-66-2759-01 7 116955210 116955210 G A WNT2 Missense_Mutation p.A168V 0.23 deleterious(0) benign(0.335) TCGA-66-2759-01 7 122342406 122342406 T A RNF148 Missense_Mutation p.Q133H 0.37 deleterious(0.01) benign(0.357) TCGA-66-2759-01 7 140159596 140159596 C T MKRN1 Missense_Mutation p.R152K 0.22 tolerated(0.45) benign(0.002) TCGA-66-2759-01 7 147092721 147092721 A T CNTNAP2 Missense_Mutation p.N507Y 0.34 tolerated(0.09) benign(0.033) TCGA-66-2759-01 7 148700821 148700821 G T PDIA4 3'UTR 0.22 TCGA-66-2759-01 7 150327164 150327164 C T GIMAP6 Missense_Mutation p.V23M 0.03 tolerated(0.07) benign(0.19) TCGA-66-2759-01 7 158526893 158526893 T A ESYT2 3'UTR 0.37 TCGA-66-2759-01 7 18684299 18684299 G A HDAC9 Missense_Mutation p.M306I 0.28 tolerated(0.21) benign(0.001) TCGA-66-2759-01 7 22985107 22985107 C T FAM126A 3'UTR 0.37 TCGA-66-2759-01 7 23757152 23757152 T A STK31 Missense_Mutation p.V68D 0.35 deleterious(0) benign(0.351) TCGA-66-2759-01 7 26404087 26404087 G A SNX10 Intron 0.36 TCGA-66-2759-01 7 2686580 2686580 C T TTYH3 Missense_Mutation p.R73C 0.15 deleterious(0.02) benign(0.168) TCGA-66-2759-01 7 27833973 27833973 C T TAX1BP1 Missense_Mutation p.T481M 0.17 tolerated(0.21) benign(0.003) TCGA-66-2759-01 7 30492316 30492316 G A NOD1 Silent p.F239F 0.31 TCGA-66-2759-01 7 37890021 37890021 G T NME8 Missense_Mutation p.Q25H 0.33 deleterious(0.05) probably_damaging(0.93) TCGA-66-2759-01 7 38431426 38431426 G T AMPH Missense_Mutation p.P601T 0.22 tolerated(0.69) benign(0.024) TCGA-66-2759-01 7 4116674 4116674 C T SDK1 Missense_Mutation p.L1019F 0.10 tolerated(0.13) benign(0.033) TCGA-66-2759-01 7 43351583 43351583 C A HECW1 Silent p.V83V 0.27 TCGA-66-2759-01 7 43918403 43918403 G A URGCP Missense_Mutation p.S220L 0.24 tolerated(0.67) possibly_damaging(0.585) TCGA-66-2759-01 7 57187521 57187521 A G ZNF479 3'UTR 0.36 TCGA-66-2759-01 7 65554683 65554683 G T ASL Splice_Site p.X354_splice 0.17 TCGA-66-2759-01 7 71177092 71177092 C A WBSCR17 Nonsense_Mutation p.C586* 0.18 TCGA-66-2759-01 7 81350087 81350087 C T HGF Nonsense_Mutation p.W415* 0.29 TCGA-66-2759-01 7 82072799 82072799 C A CACNA2D1 5'UTR 0.20 TCGA-66-2759-01 7 86998748 86998748 G T CROT Missense_Mutation p.V230F 0.14 tolerated(0.06) benign(0.396) TCGA-66-2759-01 7 87170770 87170770 C A ABCB1 Missense_Mutation p.R741I 0.15 tolerated(0.23) benign(0.009) TCGA-66-2759-01 7 87737555 87737555 C T ADAM22 Missense_Mutation p.S152L 0.16 deleterious(0) probably_damaging(0.948) TCGA-66-2759-01 7 88963235 88963235 A C ZNF804B Silent p.T313T 0.20 TCGA-66-2759-01 7 92978023 92978023 G A CCDC132 Silent p.L736L 0.15 TCGA-66-2759-01 7 92983001 92983001 G T CCDC132 Missense_Mutation p.R838L 0.19 tolerated(0.63) benign(0.09) TCGA-66-2759-01 7 93101770 93101770 C A CALCR Missense_Mutation p.G134C 0.22 deleterious(0) probably_damaging(1) TCGA-66-2759-01 8 104778588 104778588 A C RIMS2 Missense_Mutation p.E174A 0.36 tolerated_low_confidence(0.24) benign(0.013) TCGA-66-2759-01 8 110416808 110416808 G A PKHD1L1 Missense_Mutation p.E467K 0.33 deleterious(0.05) benign(0.317) TCGA-66-2759-01 8 113318350 113318350 G T CSMD3 Silent p.R2653R 0.43 TCGA-66-2759-01 8 119391882 119391882 T C SAMD12 Missense_Mutation p.E127G 0.39 deleterious(0) probably_damaging(0.995) TCGA-66-2759-01 8 124978246 124978246 G T FER1L6 Splice_Site p.X66_splice 0.23 TCGA-66-2759-01 8 133141514 133141514 T G KCNQ3 Missense_Mutation p.I872L 0.21 tolerated_low_confidence(0.11) benign(0) TCGA-66-2759-01 8 133146582 133146582 G A KCNQ3 Missense_Mutation p.S585F 0.20 tolerated(0.11) benign(0.109) TCGA-66-2759-01 8 133855011 133855011 G C PHF20L1 Missense_Mutation p.G880A 0.21 tolerated(0.22) benign(0.002) TCGA-66-2759-01 8 21771122 21771122 A G DOK2 5'UTR 0.32 TCGA-66-2759-01 8 38133958 38133958 G A WHSC1L1 Nonsense_Mutation p.R1310* 0.06 TCGA-66-2759-01 8 55539409 55539409 G T RP1 Missense_Mutation p.E989D 0.18 tolerated(0.33) benign(0.006) TCGA-66-2759-01 8 66525598 66525598 C T ARMC1 Missense_Mutation p.A116T 0.32 tolerated(0.24) benign(0.084) TCGA-66-2759-01 8 73979670 73979670 G A SBSPON Missense_Mutation p.A234V 0.36 deleterious(0) probably_damaging(1) TCGA-66-2759-01 8 7718353 7718353 T A SPAG11A Intron 0.14 TCGA-66-2759-01 8 77764043 77764043 G T ZFHX4 Missense_Mutation p.S1629I 0.43 benign(0.227) TCGA-66-2759-01 8 77767662 77767662 G T ZFHX4 Silent p.P2835P 0.09 TCGA-66-2759-01 8 77767663 77767663 G T ZFHX4 Missense_Mutation p.A2836S 0.09 benign(0.187) TCGA-66-2759-01 8 91029541 91029541 G T DECR1 Missense_Mutation p.V87L 0.18 tolerated(0.05) possibly_damaging(0.496) TCGA-66-2759-01 8 95186469 95186469 G A CDH17 Silent p.V148V 0.22 TCGA-66-2759-01 9 100756944 100756944 C G ANP32B Nonsense_Mutation p.S29* 0.36 TCGA-66-2759-01 9 104193079 104193079 G T ALDOB Missense_Mutation p.L31M 0.24 deleterious(0.01) probably_damaging(0.995) TCGA-66-2759-01 9 109686536 109686536 C A ZNF462 Missense_Mutation p.R115S 0.30 possibly_damaging(0.683) TCGA-66-2759-01 9 115931591 115931591 C - FKBP15 Frame_Shift_Del p.G1133Vfs*45 0.33 TCGA-66-2759-01 9 117400949 117400949 C T C9orf91 Silent p.N264N 0.15 TCGA-66-2759-01 9 119460833 119460833 G A TRIM32 Missense_Mutation p.R271Q 0.30 tolerated(0.65) benign(0.001) TCGA-66-2759-01 9 131048234 131048234 G T SWI5 Nonsense_Mutation p.E189* 0.29 TCGA-66-2759-01 9 139353940 139353940 G A SEC16A Silent p.Y1753Y 0.29 TCGA-66-2759-01 9 139391559 139391559 G C NOTCH1 Nonsense_Mutation p.S2211* 0.33 TCGA-66-2759-01 9 140146913 140146913 A C C9orf173 Missense_Mutation p.Q143P 0.32 deleterious(0.01) probably_damaging(0.923) TCGA-66-2759-01 9 14737563 14737563 C T FREM1 Nonsense_Mutation p.W2124* 0.33 TCGA-66-2759-01 9 33900199 33900199 C T UBE2R2 Missense_Mutation p.H98Y 0.65 deleterious(0) possibly_damaging(0.82) TCGA-66-2759-01 9 73028180 73028180 C G KLF9 Missense_Mutation p.E34Q 0.31 tolerated(0.25) benign(0.17) TCGA-66-2759-01 9 75431061 75431061 T C TMC1 Silent p.P566P 0.38 TCGA-66-2759-01 9 77377111 77377111 C G TRPM6 Missense_Mutation p.K1492N 0.34 tolerated_low_confidence(0.47) benign(0.021) TCGA-66-2759-01 9 97054700 97054700 C G ZNF169 Silent p.T37T 0.30 TCGA-66-2759-01 X 102317703 102317703 G A BEX1 3'UTR 0.68 TCGA-66-2759-01 X 105166013 105166013 C G NRK Missense_Mutation p.P858R 0.75 tolerated(0.05) probably_damaging(0.984) TCGA-66-2759-01 X 107225025 107225025 C T TEX13B Silent p.L111L 0.64 TCGA-66-2759-01 X 122532510 122532510 C A GRIA3 Missense_Mutation p.D312E 0.52 deleterious(0.03) benign(0.061) TCGA-66-2759-01 X 122537300 122537300 T A GRIA3 Missense_Mutation p.F408Y 0.67 tolerated(1) benign(0) TCGA-66-2759-01 X 122561815 122561815 G C GRIA3 Missense_Mutation p.G634A 0.58 tolerated(0.06) probably_damaging(1) TCGA-66-2759-01 X 129813618 129813618 C A ENOX2 Nonsense_Mutation p.E149* 0.70 TCGA-66-2759-01 X 139587162 139587162 G T SOX3 Silent p.R22R 0.70 TCGA-66-2759-01 X 139865661 139865661 C A CDR1 3'UTR 0.53 TCGA-66-2759-01 X 145078222 145078222 G T MIR892A RNA 0.63 TCGA-66-2759-01 X 153072196 153072196 C A PDZD4 Splice_Site p.X162_splice 0.68 TCGA-66-2759-01 X 16170751 16170751 C A GRPR Missense_Mutation p.H380N 0.61 tolerated_low_confidence(0.06) benign(0.004) TCGA-66-2759-01 X 21627282 21627282 C A CNKSR2 Missense_Mutation p.Q747K 0.68 tolerated(0.55) benign(0.028) TCGA-66-2759-01 X 21675230 21675230 C A KLHL34 Missense_Mutation p.G226V 0.50 deleterious(0) probably_damaging(0.998) TCGA-66-2759-01 X 2184904 2184904 A G DHRSX Missense_Mutation p.L158P 0.33 deleterious(0) probably_damaging(1) TCGA-66-2759-01 X 31676156 31676156 G A DMD Missense_Mutation p.H2660Y 0.27 benign(0.291) TCGA-66-2759-01 X 37545361 37545361 G T XK Silent p.A49A 0.50 TCGA-66-2759-01 X 41075504 41075505 - T USP9X Frame_Shift_Ins p.R1896Sfs*4 0.45 TCGA-66-2759-01 X 48369716 48369716 T A PORCN Missense_Mutation p.V57E 0.77 deleterious(0.03) benign(0.164) TCGA-66-2759-01 X 71349717 71349717 C A RGAG4 Silent p.G558G 0.55 TCGA-66-2759-01 X 7880069 7880069 C A PNPLA4 Missense_Mutation p.Q159H 0.57 tolerated(0.11) probably_damaging(0.958) TCGA-66-2759-01 X 79698639 79698639 G C FAM46D Missense_Mutation p.V201L 0.68 tolerated(0.05) benign(0.013) TCGA-66-2759-01 Y 16953005 16953005 C T NLGN4Y Missense_Mutation p.P772S 0.27 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-66-2759-01 Y 22930792 22930792 C G RPS4Y2 Missense_Mutation p.I154M 0.68 deleterious(0.01) possibly_damaging(0.882) TCGA-66-2759-01 Y 4924798 4924803 ACAGAG - PCDH11Y 5'UTR 0.63 TCGA-66-2759-01 Y 6114379 6114379 C A TSPY2 Silent p.R24R 0.71 TCGA-66-2763-01 10 106907423 106907423 C A SORCS3 Missense_Mutation p.Q451K 0.37 deleterious(0.01) possibly_damaging(0.77) TCGA-66-2763-01 10 121212678 121212678 A G GRK5 Missense_Mutation p.K522E 0.44 tolerated(0.25) benign(0.26) TCGA-66-2763-01 10 128147613 128147613 C G C10orf90 Silent p.L631L 0.45 TCGA-66-2763-01 10 134622126 134622126 C A TTC40 Missense_Mutation p.R2649S 0.43 tolerated_low_confidence(0.14) benign(0.402) TCGA-66-2763-01 10 21097437 21097437 A G NEBL Splice_Site p.X921_splice 0.24 TCGA-66-2763-01 10 24813352 24813352 G A KIAA1217 Missense_Mutation p.E853K 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-66-2763-01 10 28032255 28032255 G C MKX Nonsense_Mutation p.Y30* 0.19 TCGA-66-2763-01 10 48388774 48388774 A C RBP3 Missense_Mutation p.F702V 0.42 tolerated(0.11) benign(0.307) TCGA-66-2763-01 10 48388777 48388777 C T RBP3 Missense_Mutation p.V701M 0.39 deleterious(0) possibly_damaging(0.608) TCGA-66-2763-01 10 5836977 5836977 G A GDI2 Silent p.L87L 0.34 TCGA-66-2763-01 10 60549108 60549108 G T BICC1 Missense_Mutation p.Q229H 0.36 deleterious(0.01) benign(0.094) TCGA-66-2763-01 10 64574132 64574132 G A EGR2 Missense_Mutation p.T89I 0.06 deleterious(0.02) probably_damaging(0.969) TCGA-66-2763-01 10 64975339 64975339 C T JMJD1C Missense_Mutation p.A266T 0.37 tolerated(0.18) benign(0.317) TCGA-66-2763-01 10 70333646 70333646 A C TET1 Missense_Mutation p.L517F 0.23 tolerated(0.13) benign(0.015) TCGA-66-2763-01 10 70451518 70451518 G T TET1 Missense_Mutation p.V2120L 0.33 deleterious(0) probably_damaging(0.946) TCGA-66-2763-01 10 70509373 70509373 G T CCAR1 Missense_Mutation p.R350L 0.30 tolerated(0.14) probably_damaging(0.931) TCGA-66-2763-01 10 7214075 7214075 T C SFMBT2 Missense_Mutation p.S733G 0.33 deleterious(0.04) benign(0.022) TCGA-66-2763-01 10 72291069 72291069 G T PALD1 Silent p.R164R 0.12 TCGA-66-2763-01 10 72291070 72291070 G T PALD1 Nonsense_Mutation p.E165* 0.12 TCGA-66-2763-01 10 75562271 75562271 G A NDST2 Missense_Mutation p.R864W 0.07 deleterious(0) probably_damaging(0.979) TCGA-66-2763-01 10 90438284 90438284 C A LIPF Missense_Mutation p.P358H 0.44 deleterious(0.01) probably_damaging(0.984) TCGA-66-2763-01 10 91143383 91143383 T A IFIT1B Missense_Mutation p.Y105N 0.48 deleterious(0.01) probably_damaging(0.983) TCGA-66-2763-01 10 98146803 98146803 C A TLL2 Missense_Mutation p.G587W 0.55 deleterious(0) probably_damaging(1) TCGA-66-2763-01 11 105923716 105923716 T G KBTBD3 Missense_Mutation p.D567A 0.26 tolerated(0.94) probably_damaging(0.997) TCGA-66-2763-01 11 107299577 107299577 C G CWF19L2 Missense_Mutation p.D461H 0.23 tolerated(0.08) benign(0.005) TCGA-66-2763-01 11 107677463 107677463 G A SLC35F2 Missense_Mutation p.A185V 0.31 tolerated(0.33) benign(0.06) TCGA-66-2763-01 11 108032210 108032210 T C NPAT Missense_Mutation p.I1201M 0.34 tolerated(0.07) benign(0.046) TCGA-66-2763-01 11 114398623 114398623 C A NXPE1 Missense_Mutation p.R136S 0.15 deleterious(0.03) possibly_damaging(0.461) TCGA-66-2763-01 11 122928975 122928975 C A HSPA8 Missense_Mutation p.W580C 0.28 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-66-2763-01 11 1265818 1265818 A T MUC5B Missense_Mutation p.T2570S 0.12 unknown(0) TCGA-66-2763-01 11 1267918 1267918 A T MUC5B Missense_Mutation p.T3270S 0.44 unknown(0) TCGA-66-2763-01 11 133715045 133715045 T C SPATA19 Missense_Mutation p.H40R 0.12 deleterious(0.04) benign(0) TCGA-66-2763-01 11 134151966 134151966 G A GLB1L3 Missense_Mutation p.R160H 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-66-2763-01 11 134253718 134253718 G A B3GAT1 Silent p.R159R 0.30 TCGA-66-2763-01 11 26582472 26582472 G T MUC15 3'UTR 0.20 TCGA-66-2763-01 11 34113458 34113458 C A CAPRIN1 Missense_Mutation p.F520L 0.15 deleterious(0.03) possibly_damaging(0.869) TCGA-66-2763-01 11 4389334 4389334 G T OR52B4 Missense_Mutation p.F64L 0.40 deleterious(0.02) benign(0.102) TCGA-66-2763-01 11 4869506 4869506 G C OR51S1 Silent p.L311L 0.44 TCGA-66-2763-01 11 5020320 5020320 A G OR51L1 Silent p.A36A 0.04 TCGA-66-2763-01 11 55371231 55371231 T A OR4C11 Missense_Mutation p.S207C 0.29 deleterious(0.03) benign(0.012) TCGA-66-2763-01 11 55371753 55371753 A C OR4C11 Missense_Mutation p.Y33D 0.29 deleterious(0) probably_damaging(1) TCGA-66-2763-01 11 57003299 57003299 A T APLNR 3'UTR 0.26 TCGA-66-2763-01 11 60184378 60184378 C - MS4A14 Frame_Shift_Del p.Q680Kfs*31 0.28 TCGA-66-2763-01 11 60482589 60482589 C A MS4A8 Silent p.V210V 0.40 TCGA-66-2763-01 11 62491838 62491839 - C HNRNPUL2 Frame_Shift_Ins p.V200Gfs*7 0.29 TCGA-66-2763-01 11 62760850 62760850 G T SLC22A8 Intron 0.44 TCGA-66-2763-01 11 64360948 64360948 C A SLC22A12 Missense_Mutation p.A193D 0.42 deleterious(0) probably_damaging(0.917) TCGA-66-2763-01 11 64535193 64535193 G A SF1 Missense_Mutation p.P523S 0.38 tolerated_low_confidence(0.13) possibly_damaging(0.803) TCGA-66-2763-01 11 64597312 64597312 T G CDC42BPG Missense_Mutation p.K1200Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-66-2763-01 11 65715500 65715500 G C TSGA10IP RNA 0.38 TCGA-66-2763-01 11 65743954 65743954 A T SART1 Missense_Mutation p.N554I 0.24 deleterious(0) probably_damaging(0.939) TCGA-66-2763-01 11 66359969 66359969 C A CCDC87 Missense_Mutation p.R173L 0.44 deleterious(0.01) possibly_damaging(0.722) TCGA-66-2763-01 11 69455970 69455970 C T CCND1 5'UTR 0.35 TCGA-66-2763-01 11 7079609 7079609 T A NLRP14 Missense_Mutation p.V854D 0.48 tolerated(0.21) benign(0.259) TCGA-66-2763-01 11 72145605 72145605 G A CLPB 5'UTR 0.21 TCGA-66-2763-01 11 77728080 77728080 C A KCTD14 Missense_Mutation p.E109D 0.47 deleterious(0) probably_damaging(1) TCGA-66-2763-01 11 82643506 82643506 C T C11orf82 Missense_Mutation p.H376Y 0.15 tolerated(0.31) benign(0.025) TCGA-66-2763-01 11 85429842 85429842 C A SYTL2 Missense_Mutation p.A858S 0.23 deleterious(0.03) probably_damaging(0.996) TCGA-66-2763-01 11 88029410 88029410 T G CTSC Silent p.S260S 0.26 TCGA-66-2763-01 12 10134718 10134718 T A CLEC12A Missense_Mutation p.S221T 0.29 deleterious(0.02) probably_damaging(0.988) TCGA-66-2763-01 12 106772055 106772055 C A POLR3B Missense_Mutation p.F169L 0.44 deleterious(0.01) probably_damaging(1) TCGA-66-2763-01 12 10786680 10786680 C A STYK1 Missense_Mutation p.L32F 0.24 tolerated(0.25) benign(0.004) TCGA-66-2763-01 12 120510336 120510336 G T CCDC64 Missense_Mutation p.A371S 0.46 tolerated(0.08) probably_damaging(0.998) TCGA-66-2763-01 12 12510333 12510333 G T LOH12CR1 5'UTR 0.32 TCGA-66-2763-01 12 13214673 13214673 C T KIAA1467 Missense_Mutation p.L233F 0.24 tolerated(0.08) benign(0.072) TCGA-66-2763-01 12 39726780 39726780 C A KIF21A Missense_Mutation p.A873S 0.33 tolerated(1) benign(0.001) TCGA-66-2763-01 12 48482584 48482584 C T SENP1 Missense_Mutation p.S127N 0.27 deleterious(0) benign(0.136) TCGA-66-2763-01 12 49359979 49359979 G C WNT10B Missense_Mutation p.R357G 0.23 deleterious(0.01) benign(0.064) TCGA-66-2763-01 12 49444705 49444706 - A KMT2D Frame_Shift_Ins p.G921Wfs*48 0.29 TCGA-66-2763-01 12 52449821 52449821 T A NR4A1 Missense_Mutation p.V308E 0.15 deleterious(0) possibly_damaging(0.9) TCGA-66-2763-01 12 54106828 54106829 - C CALCOCO1 Intron 0.18 TCGA-66-2763-01 12 56086982 56086982 G A ITGA7 Silent p.G889G 0.14 TCGA-66-2763-01 12 58087923 58087923 T A OS9 5'UTR 0.18 TCGA-66-2763-01 12 72969157 72969157 C T TRHDE Missense_Mutation p.R707W 0.08 deleterious(0.01) probably_damaging(0.962) TCGA-66-2763-01 12 78515767 78515767 C A NAV3 Missense_Mutation p.T1266N 0.44 deleterious(0.05) benign(0.343) TCGA-66-2763-01 12 78534061 78534061 G T NAV3 Splice_Site p.X1544_splice 0.41 TCGA-66-2763-01 12 90004201 90004201 T C ATP2B1 Missense_Mutation p.K778E 0.49 deleterious(0) benign(0.325) TCGA-66-2763-01 13 111155574 111155574 C T COL4A2 Silent p.A1328A 0.68 TCGA-66-2763-01 13 113803714 113803714 G A F10 Silent p.G450G 0.59 TCGA-66-2763-01 13 77569277 77569277 G T CLN5 Missense_Mutation p.V134F 0.53 tolerated(0.19) benign(0.408) TCGA-66-2763-01 13 84454197 84454197 C A SLITRK1 Silent p.L482L 0.56 TCGA-66-2763-01 13 96086249 96086249 C G CLDN10 Missense_Mutation p.N54K 0.54 deleterious(0) possibly_damaging(0.852) TCGA-66-2763-01 14 102028707 102028707 T A DIO3 Missense_Mutation p.Y292N 0.27 deleterious(0) probably_damaging(0.986) TCGA-66-2763-01 14 104641889 104641889 G A KIF26A Missense_Mutation p.D922N 0.52 tolerated(0.31) benign(0.076) TCGA-66-2763-01 14 105396386 105396386 G C PLD4 Missense_Mutation p.D221H 0.21 deleterious(0) probably_damaging(1) TCGA-66-2763-01 14 105404734 105404734 G A AHNAK2 Missense_Mutation p.A5685V 0.45 possibly_damaging(0.451) TCGA-66-2763-01 14 106236302 106236302 G T IGHG3 Missense_Mutation p.P168Q 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-66-2763-01 14 106963106 106963106 G T IGHV1-45 Missense_Mutation p.A59D 0.29 deleterious(0.03) possibly_damaging(0.729) TCGA-66-2763-01 14 22539438 22539438 A G TRAV22 Missense_Mutation p.T100A 0.32 tolerated(0.44) benign(0.118) TCGA-66-2763-01 14 22631532 22631532 G T TRAV29DV5 Nonsense_Mutation p.G42* 0.13 TCGA-66-2763-01 14 22631533 22631533 G T TRAV29DV5 Missense_Mutation p.G42V 0.12 deleterious(0) probably_damaging(0.997) TCGA-66-2763-01 14 22891939 22891939 A T TRDV2 Missense_Mutation p.Q84L 0.38 tolerated(0.11) benign(0.014) TCGA-66-2763-01 14 23817725 23817725 G A SLC22A17 Silent p.L228L 0.44 TCGA-66-2763-01 14 23858820 23858820 T A MYH6 Nonsense_Mutation p.K1281* 0.36 TCGA-66-2763-01 14 44976161 44976161 T C FSCB Silent p.V10V 0.31 TCGA-66-2763-01 14 45400680 45400680 T C KLHL28 Missense_Mutation p.I470V 0.36 tolerated(0.28) possibly_damaging(0.739) TCGA-66-2763-01 14 52735195 52735195 C T PTGDR Silent p.A221A 0.28 TCGA-66-2763-01 14 56746496 56746496 G T PELI2 Splice_Site p.X103_splice 0.34 TCGA-66-2763-01 14 64153375 64153375 C T SGPP1 Splice_Site p.X259_splice 0.31 TCGA-66-2763-01 14 66096258 66096258 T A FUT8 Silent p.G177G 0.25 TCGA-66-2763-01 14 68234442 68234442 C A ZFYVE26 Silent p.R1923R 0.27 TCGA-66-2763-01 14 70238304 70238304 G T SRSF5 3'UTR 0.24 TCGA-66-2763-01 14 70925511 70925511 C T ADAM21 Missense_Mutation p.A432V 0.26 deleterious(0) benign(0.026) TCGA-66-2763-01 14 80669428 80669428 G T DIO2 Silent p.A178A 0.25 TCGA-66-2763-01 14 88452846 88452846 A G GALC Silent p.N143N 0.30 TCGA-66-2763-01 14 92959848 92959848 G T SLC24A4 Missense_Mutation p.R582L 0.25 tolerated(0.09) possibly_damaging(0.545) TCGA-66-2763-01 14 93151479 93151479 C A RIN3 Missense_Mutation p.S872Y 0.30 deleterious(0.01) benign(0.414) TCGA-66-2763-01 15 23261864 23261864 G T GOLGA8I Missense_Mutation p.V326F 0.38 deleterious(0) probably_damaging(0.988) TCGA-66-2763-01 15 25925977 25925977 C A ATP10A Missense_Mutation p.G1220C 0.15 deleterious(0.03) benign(0.01) TCGA-66-2763-01 15 43020159 43020159 T C CDAN1 Missense_Mutation p.I981V 0.37 tolerated(0.16) possibly_damaging(0.743) TCGA-66-2763-01 15 43638116 43638116 G T ADAL Nonsense_Mutation p.E164* 0.32 TCGA-66-2763-01 15 53908408 53908408 A C WDR72 Missense_Mutation p.F665L 0.19 tolerated(0.46) benign(0.109) TCGA-66-2763-01 15 54630612 54630612 A T UNC13C Silent p.V1546V 0.19 TCGA-66-2763-01 15 65157606 65157606 C T PLEKHO2 Missense_Mutation p.S331F 0.23 deleterious(0.01) possibly_damaging(0.55) TCGA-66-2763-01 15 72643512 72643512 G A HEXA Missense_Mutation p.P212S 0.41 deleterious(0) probably_damaging(1) TCGA-66-2763-01 15 72987552 72987552 A T BBS4 Missense_Mutation p.K20I 0.23 tolerated(0.05) benign(0.372) TCGA-66-2763-01 15 75014915 75014915 T G CYP1A1 Missense_Mutation p.Q175P 0.24 tolerated(0.24) possibly_damaging(0.849) TCGA-66-2763-01 15 76225331 76225331 G T FBXO22 Missense_Mutation p.R367L 0.37 deleterious(0) probably_damaging(0.954) TCGA-66-2763-01 15 80423618 80423618 A G ZFAND6 Missense_Mutation p.K154R 0.20 deleterious(0) probably_damaging(0.996) TCGA-66-2763-01 15 86122469 86122469 C T AKAP13 Silent p.D390D 0.07 TCGA-66-2763-01 16 20471590 20471590 G T ACSM2A Missense_Mutation p.D52Y 0.31 deleterious(0) probably_damaging(0.994) TCGA-66-2763-01 16 22588128 22588128 G A RP11-368J21.3 RNA 0.19 TCGA-66-2763-01 16 24104168 24104168 G T PRKCB Missense_Mutation p.V196L 0.34 deleterious(0.05) benign(0.347) TCGA-66-2763-01 16 24895427 24895427 A T SLC5A11 Silent p.I213I 0.34 TCGA-66-2763-01 16 24902199 24902199 C T SLC5A11 Missense_Mutation p.A225V 0.04 deleterious(0.01) benign(0.426) TCGA-66-2763-01 16 2983294 2983294 A G FLYWCH1 Silent p.G319G 0.40 TCGA-66-2763-01 16 31235576 31235576 G A TRIM72 Missense_Mutation p.E312K 0.20 tolerated(0.11) probably_damaging(0.965) TCGA-66-2763-01 16 55844487 55844487 G T CES1 Missense_Mutation p.D420E 0.24 tolerated(0.49) benign(0.014) TCGA-66-2763-01 16 67943500 67943500 T G PSKH1 Missense_Mutation p.L283R 0.51 deleterious(0) probably_damaging(0.999) TCGA-66-2763-01 16 70834843 70834843 G A VAC14 5'UTR 0.45 TCGA-66-2763-01 16 70934960 70934960 G A HYDIN Silent p.L2999L 0.09 TCGA-66-2763-01 16 819634 819634 C T MSLNL Splice_Site p.X986_splice 0.84 TCGA-66-2763-01 16 89702443 89702443 G T DPEP1 Missense_Mutation p.G78C 0.50 deleterious(0) probably_damaging(0.995) TCGA-66-2763-01 17 1538212 1538212 C A SCARF1 Missense_Mutation p.R778L 0.57 deleterious(0.04) benign(0.131) TCGA-66-2763-01 17 17129541 17129541 G C FLCN Silent p.P115P 0.43 TCGA-66-2763-01 17 27076391 27076391 C T TRAF4 Silent p.H403H 0.14 TCGA-66-2763-01 17 27425444 27425444 C G MYO18A Missense_Mutation p.R1267P 0.53 deleterious(0) possibly_damaging(0.519) TCGA-66-2763-01 17 28656433 28656433 A G TMIGD1 Missense_Mutation p.L66P 0.40 deleterious(0) probably_damaging(0.974) TCGA-66-2763-01 17 4443135 4443135 C A MYBBP1A Missense_Mutation p.D1188Y 0.50 deleterious(0.04) benign(0.223) TCGA-66-2763-01 17 47809948 47809948 C - FAM117A Frame_Shift_Del p.A111Pfs*20 0.43 TCGA-66-2763-01 17 4843194 4843194 C A SLC25A11 Silent p.T4T 0.54 TCGA-66-2763-01 17 59482960 59482960 G A TBX2 Silent p.L483L 0.31 TCGA-66-2763-01 17 62856503 62856503 C G LRRC37A3 Missense_Mutation p.G1254A 0.64 deleterious(0.01) possibly_damaging(0.829) TCGA-66-2763-01 17 67041417 67041417 G C ABCA9 Nonsense_Mutation p.S122* 0.62 TCGA-66-2763-01 17 67132311 67132311 T C ABCA6 Missense_Mutation p.I128V 0.62 tolerated(0.66) benign(0.074) TCGA-66-2763-01 17 67273892 67273892 T A ABCA5 Missense_Mutation p.E828D 0.59 tolerated(0.89) benign(0.029) TCGA-66-2763-01 17 73870924 73870924 G A TRIM47 Silent p.S519S 0.64 TCGA-66-2763-01 17 7577106 7577106 G C TP53 Missense_Mutation p.P278A 0.48 deleterious(0.01) probably_damaging(1) TCGA-66-2763-01 17 7851284 7851284 G C CNTROB Missense_Mutation p.L732F 0.50 deleterious_low_confidence(0.02) probably_damaging(0.91) TCGA-66-2763-01 17 8221893 8221893 C A ARHGEF15 Silent p.I595I 0.45 TCGA-66-2763-01 18 14513714 14513714 G T POTEC Missense_Mutation p.L494M 0.41 deleterious(0.01) probably_damaging(0.979) TCGA-66-2763-01 18 14537863 14537864 - T POTEC Frame_Shift_Ins p.N249Kfs*2 0.31 TCGA-66-2763-01 18 28666569 28666569 G T DSC2 Silent p.I304I 0.43 TCGA-66-2763-01 18 31323717 31323717 G T ASXL3 Missense_Mutation p.S1302I 0.37 benign(0.432) TCGA-66-2763-01 18 59157658 59157658 C G CDH20 5'UTR 0.45 TCGA-66-2763-01 19 1056969 1056969 G A ABCA7 Silent p.P1550P 0.03 TCGA-66-2763-01 19 14627579 14627579 A G DNAJB1 Missense_Mutation p.V164A 0.24 deleterious(0.01) possibly_damaging(0.56) TCGA-66-2763-01 19 14698495 14698495 C G CLEC17A Missense_Mutation p.P64R 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.796) TCGA-66-2763-01 19 17449960 17449960 G T GTPBP3 Silent p.V263V 0.24 TCGA-66-2763-01 19 18327649 18327649 C A PDE4C Missense_Mutation p.A463S 0.30 deleterious(0.01) possibly_damaging(0.706) TCGA-66-2763-01 19 2279031 2279031 A G C19orf35 Missense_Mutation p.L55P 0.19 tolerated(0.14) possibly_damaging(0.837) TCGA-66-2763-01 19 37879768 37879768 C T ZNF527 Missense_Mutation p.P273S 0.36 tolerated(0.05) benign(0.009) TCGA-66-2763-01 19 3789356 3789356 T A MATK 5'UTR 0.22 TCGA-66-2763-01 19 39361379 39361379 G A RINL Silent p.I285I 0.38 TCGA-66-2763-01 19 39798447 39798447 G T LRFN1 Missense_Mutation p.F714L 0.42 tolerated(0.56) possibly_damaging(0.636) TCGA-66-2763-01 19 39869141 39869141 C G SAMD4B Intron 0.20 TCGA-66-2763-01 19 40895578 40895578 A G HIPK4 Missense_Mutation p.F78L 0.03 tolerated(0.36) probably_damaging(0.922) TCGA-66-2763-01 19 45448693 45448693 G T APOC4 Splice_Site 0.26 TCGA-66-2763-01 19 45448694 45448694 G T APOC4 Splice_Site 0.27 TCGA-66-2763-01 19 46973241 46973241 G T PNMAL1 Missense_Mutation p.A351D 0.25 deleterious(0.04) possibly_damaging(0.82) TCGA-66-2763-01 19 51563314 51563314 C A KLK13 Silent p.G92G 0.36 TCGA-66-2763-01 19 51768734 51768734 C A SIGLECL1 Silent p.P45P 0.30 TCGA-66-2763-01 19 51994991 51994991 C A SIGLEC12 Missense_Mutation p.Q564H 0.29 tolerated(1) benign(0.001) TCGA-66-2763-01 19 52825873 52825873 G T ZNF480 Missense_Mutation p.C457F 0.29 deleterious(0) probably_damaging(1) TCGA-66-2763-01 19 53384080 53384080 C A ZNF320 Missense_Mutation p.R433S 0.24 deleterious(0.04) possibly_damaging(0.611) TCGA-66-2763-01 19 53668046 53668046 C A ZNF665 Missense_Mutation p.G566V 0.27 deleterious(0) probably_damaging(1) TCGA-66-2763-01 19 54297352 54297352 C A NLRP12 Missense_Mutation p.R1046M 0.30 tolerated(0.09) possibly_damaging(0.784) TCGA-66-2763-01 19 54726883 54726883 G A LILRB3 5'Flank 0.26 TCGA-66-2763-01 19 54784362 54784362 C T LILRB2 5'UTR 0.26 TCGA-66-2763-01 19 55316354 55316354 G C KIR2DL4 Silent p.T61T 0.62 TCGA-66-2763-01 19 55493895 55493895 C T NLRP2 Silent p.L277L 0.31 TCGA-66-2763-01 19 56321318 56321318 C T NLRP11 Missense_Mutation p.D220N 0.42 deleterious(0.02) probably_damaging(0.951) TCGA-66-2763-01 19 56925400 56925400 A T ZNF583 Missense_Mutation p.R28W 0.29 deleterious(0) possibly_damaging(0.846) TCGA-66-2763-01 19 57326945 57326945 C A PEG3 Silent p.L955L 0.22 TCGA-66-2763-01 19 57326953 57326953 G A PEG3 Missense_Mutation p.H953Y 0.21 deleterious(0.01) possibly_damaging(0.898) TCGA-66-2763-01 19 58967783 58967783 G T ZNF324B Missense_Mutation p.R491L 0.36 deleterious(0.02) possibly_damaging(0.878) TCGA-66-2763-01 19 6697745 6697745 C T C3 Missense_Mutation p.R834Q 0.38 deleterious(0.05) possibly_damaging(0.484) TCGA-66-2763-01 19 828343 828343 C T AZU1 Missense_Mutation p.H58Y 0.33 tolerated(0.06) probably_damaging(0.99) TCGA-66-2763-01 19 8595448 8595448 G T MYO1F Missense_Mutation p.L685M 0.35 deleterious(0.02) probably_damaging(0.947) TCGA-66-2763-01 19 9058097 9058097 A T MUC16 Silent p.S9783S 0.34 TCGA-66-2763-01 19 9068679 9068679 G T MUC16 Missense_Mutation p.T6256N 0.27 unknown(0) TCGA-66-2763-01 1 101704932 101704932 C A S1PR1 Missense_Mutation p.S131Y 0.41 deleterious(0) probably_damaging(1) TCGA-66-2763-01 1 103405902 103405902 G T COL11A1 Missense_Mutation p.P1122H 0.47 unknown(0) TCGA-66-2763-01 1 103491446 103491446 G - COL11A1 Intron 0.33 TCGA-66-2763-01 1 11158195 11158195 C A EXOSC10 Missense_Mutation p.V44L 0.35 tolerated(0.44) benign(0.052) TCGA-66-2763-01 1 149858886 149858886 C A HIST2H2AC Missense_Mutation p.T121N 0.30 deleterious_low_confidence(0.01) benign(0.115) TCGA-66-2763-01 1 150900289 150900289 G T SETDB1 Silent p.L33L 0.36 TCGA-66-2763-01 1 151133379 151133379 C A LYSMD1 Missense_Mutation p.E221D 0.34 deleterious(0) probably_damaging(0.996) TCGA-66-2763-01 1 152327240 152327240 G T FLG2 Missense_Mutation p.Q1008K 0.34 unknown(0) TCGA-66-2763-01 1 153915407 153915407 C G DENND4B Missense_Mutation p.E173Q 0.35 deleterious(0) probably_damaging(0.995) TCGA-66-2763-01 1 153984798 153984798 T A NUP210L Missense_Mutation p.T1568S 0.29 tolerated(0.47) benign(0.005) TCGA-66-2763-01 1 155838148 155838148 G T SYT11 Nonsense_Mutation p.E143* 0.29 TCGA-66-2763-01 1 156821831 156821831 G A INSRR Missense_Mutation p.P264S 0.32 tolerated(0.08) benign(0.014) TCGA-66-2763-01 1 158450404 158450404 T C OR10R2 Missense_Mutation p.L246P 0.33 deleterious(0) probably_damaging(0.988) TCGA-66-2763-01 1 159275932 159275932 C T FCER1A Silent p.S162S 0.28 TCGA-66-2763-01 1 160523826 160523826 T C CD84 Missense_Mutation p.N167D 0.27 deleterious(0.03) benign(0.14) TCGA-66-2763-01 1 164789420 164789420 A T PBX1 Missense_Mutation p.Q370L 0.32 deleterious(0) benign(0.001) TCGA-66-2763-01 1 166039931 166039931 G A FAM78B Silent p.S111S 0.15 TCGA-66-2763-01 1 167815444 167815444 C T ADCY10 Missense_Mutation p.C832Y 0.32 tolerated(0.07) possibly_damaging(0.895) TCGA-66-2763-01 1 175096160 175096160 C A TNN Missense_Mutation p.P995H 0.35 deleterious(0) probably_damaging(0.982) TCGA-66-2763-01 1 176564298 176564298 C G PAPPA2 Missense_Mutation p.R520G 0.33 deleterious(0) possibly_damaging(0.762) TCGA-66-2763-01 1 182615931 182615931 C A RGS8 Missense_Mutation p.R179M 0.32 deleterious(0) probably_damaging(0.996) TCGA-66-2763-01 1 196884211 196884211 G T CFHR4 Missense_Mutation p.G494C 0.18 deleterious(0) probably_damaging(0.957) TCGA-66-2763-01 1 197325966 197325966 A G CRB1 Missense_Mutation p.T332A 0.39 tolerated(0.32) benign(0.192) TCGA-66-2763-01 1 200539041 200539041 G A KIF14 Missense_Mutation p.S1220L 0.35 deleterious(0) benign(0.245) TCGA-66-2763-01 1 207930887 207930887 G C CD46 Missense_Mutation p.E97Q 0.29 tolerated(0.22) benign(0.245) TCGA-66-2763-01 1 208390971 208390971 G T PLXNA2 Silent p.I99I 0.31 TCGA-66-2763-01 1 212969882 212969882 A C TATDN3 Silent p.A41A 0.30 TCGA-66-2763-01 1 215821936 215821936 G A USH2A Missense_Mutation p.T4839M 0.05 benign(0.16) TCGA-66-2763-01 1 222923533 222923533 G A FAM177B 3'UTR 0.35 TCGA-66-2763-01 1 224599262 224599262 T A WDR26 Missense_Mutation p.Q342L 0.24 tolerated(0.09) benign(0.032) TCGA-66-2763-01 1 237052583 237052583 G A MTR Missense_Mutation p.R985Q 0.35 deleterious(0.01) possibly_damaging(0.594) TCGA-66-2763-01 1 243328007 243328007 T C CEP170 Silent p.S1085S 0.24 TCGA-66-2763-01 1 24434610 24434610 G A MYOM3 Intron 0.42 TCGA-66-2763-01 1 245862230 245862230 C A KIF26B Missense_Mutation p.H2023Q 0.06 tolerated(0.05) unknown(0) TCGA-66-2763-01 1 24663156 24663156 G T GRHL3 Missense_Mutation p.G151C 0.40 tolerated(0.07) possibly_damaging(0.815) TCGA-66-2763-01 1 248224064 248224064 C T OR2L3 Silent p.F27F 0.29 TCGA-66-2763-01 1 248402228 248402228 A T OR2M4 5'Flank 0.33 TCGA-66-2763-01 1 248487634 248487634 G T OR2M7 Silent p.P79P 0.32 TCGA-66-2763-01 1 248512380 248512380 G T OR14C36 Missense_Mutation p.V102L 0.30 tolerated(0.15) benign(0.186) TCGA-66-2763-01 1 248524928 248524928 T A OR2T4 Missense_Mutation p.F16I 0.27 tolerated_low_confidence(0.18) benign(0.003) TCGA-66-2763-01 1 248651977 248651977 C A OR2T5 Missense_Mutation p.L30I 0.14 tolerated(0.15) benign(0.043) TCGA-66-2763-01 1 249211933 249211933 C T PGBD2 Silent p.L384L 0.31 TCGA-66-2763-01 1 26664162 26664162 C A AIM1L Missense_Mutation p.V297L 0.45 tolerated(0.35) benign(0.006) TCGA-66-2763-01 1 27648883 27648883 G T TMEM222 Splice_Site p.X65_splice 0.50 TCGA-66-2763-01 1 32673382 32673382 G T IQCC Missense_Mutation p.R447L 0.37 deleterious_low_confidence(0.01) benign(0.324) TCGA-66-2763-01 1 40980595 40980595 G T EXO5 Nonsense_Mutation p.E127* 0.19 TCGA-66-2763-01 1 55566598 55566598 C T USP24 Missense_Mutation p.D1729N 0.10 deleterious(0.01) benign(0.124) TCGA-66-2763-01 1 74665364 74665364 T C FPGT-TNNI3K Silent p.R46R 0.32 TCGA-66-2763-01 1 85422122 85422122 A G MCOLN2 Missense_Mutation p.V186A 0.46 deleterious(0) benign(0.002) TCGA-66-2763-01 1 86889924 86889924 C T CLCA2 5'UTR 0.43 TCGA-66-2763-01 1 9188908 9188908 G C GPR157 Missense_Mutation p.S60W 0.23 deleterious(0) probably_damaging(1) TCGA-66-2763-01 1 94496616 94496616 A C ABCA4 Missense_Mutation p.F1397V 0.44 deleterious(0.03) probably_damaging(0.99) TCGA-66-2763-01 20 1546881 1546881 C A SIRPB1 Missense_Mutation p.V373L 0.43 tolerated(0.07) benign(0.003) TCGA-66-2763-01 20 23433377 23433377 G T CST11 Nonsense_Mutation p.Y24* 0.26 TCGA-66-2763-01 20 24950913 24950913 C T APMAP Silent p.K211K 0.29 TCGA-66-2763-01 20 30584970 30584970 C T XKR7 Missense_Mutation p.R484W 0.40 deleterious(0) probably_damaging(0.991) TCGA-66-2763-01 20 31062443 31062443 T A C20orf112 Missense_Mutation p.R24W 0.24 deleterious(0) probably_damaging(0.954) TCGA-66-2763-01 20 50803458 50803458 C A ZFP64 Missense_Mutation p.V67F 0.28 deleterious(0) probably_damaging(0.979) TCGA-66-2763-01 20 62038177 62038177 G T KCNQ2 Missense_Mutation p.N813K 0.20 deleterious(0.01) benign(0.392) TCGA-66-2763-01 20 62421833 62421833 G A ZBTB46 Missense_Mutation p.A93V 0.08 deleterious(0) probably_damaging(0.999) TCGA-66-2763-01 21 22838977 22838977 G C NCAM2 Missense_Mutation p.V569L 0.50 tolerated(1) probably_damaging(0.997) TCGA-66-2763-01 21 35893929 35893929 C A RCAN1 Missense_Mutation p.A152S 0.20 tolerated(0.42) probably_damaging(0.998) TCGA-66-2763-01 21 45670819 45670819 G T DNMT3L Missense_Mutation p.F261L 0.56 tolerated(0.07) benign(0.006) TCGA-66-2763-01 21 46032303 46032303 C G KRTAP10-8 Missense_Mutation p.P96A 0.46 tolerated(0.07) unknown(0) TCGA-66-2763-01 21 46932276 46932276 C G COL18A1 Silent p.L1508L 0.48 TCGA-66-2763-01 22 16267031 16267031 C A POTEH Missense_Mutation p.G473V 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.83) TCGA-66-2763-01 22 16277794 16277794 A C POTEH Missense_Mutation p.S374A 0.13 tolerated(0.49) possibly_damaging(0.505) TCGA-66-2763-01 22 23077342 23077342 C T IGLV2-18 Missense_Mutation p.S40F 0.31 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-66-2763-01 22 25152463 25152463 C G PIWIL3 Missense_Mutation p.E189Q 0.37 tolerated(0.3) benign(0.006) TCGA-66-2763-01 22 26299711 26299711 G T MYO18B Missense_Mutation p.K1687N 0.33 deleterious(0) probably_damaging(0.978) TCGA-66-2763-01 22 26299712 26299712 G T MYO18B Nonsense_Mutation p.E1688* 0.33 TCGA-66-2763-01 22 26351204 26351204 G A MYO18B Silent p.A2010A 0.32 TCGA-66-2763-01 22 30659814 30659814 T C OSM 3'UTR 0.35 TCGA-66-2763-01 22 40161479 40161479 G T ENTHD1 Missense_Mutation p.A323E 0.30 deleterious(0.01) possibly_damaging(0.489) TCGA-66-2763-01 22 41565529 41565529 G A EP300 Missense_Mutation p.D1399N 0.42 probably_damaging(1) TCGA-66-2763-01 22 43930576 43930576 G T EFCAB6 Missense_Mutation p.H1409N 0.36 tolerated(0.7) benign(0.004) TCGA-66-2763-01 2 128471191 128471191 C A WDR33 Nonsense_Mutation p.E1092* 0.27 TCGA-66-2763-01 2 136575532 136575532 G T LCT Silent p.I362I 0.49 TCGA-66-2763-01 2 138762736 138762736 T A HNMT Missense_Mutation p.L155Q 0.46 deleterious(0) possibly_damaging(0.869) TCGA-66-2763-01 2 141108424 141108424 C A LRP1B Missense_Mutation p.G3945V 0.45 probably_damaging(0.953) TCGA-66-2763-01 2 1491690 1491690 T C TPO Silent p.F565F 0.32 TCGA-66-2763-01 2 166900510 166900510 C A SCN1A Missense_Mutation p.R571I 0.50 deleterious(0.01) possibly_damaging(0.79) TCGA-66-2763-01 2 167334122 167334122 G A SCN7A Missense_Mutation p.H29Y 0.43 tolerated(0.06) benign(0.328) TCGA-66-2763-01 2 171240299 171240299 G T MYO3B Missense_Mutation p.C422F 0.43 deleterious(0.04) benign(0.014) TCGA-66-2763-01 2 176987711 176987711 C G HOXD9 Missense_Mutation p.S72W 0.50 deleterious(0) probably_damaging(1) TCGA-66-2763-01 2 179422131 179422131 T - TTN Frame_Shift_Del p.A29287Pfs*114 0.37 TCGA-66-2763-01 2 179540656 179540656 G - TTN Frame_Shift_Del p.P11482Lfs*57 0.48 TCGA-66-2763-01 2 179604277 179604277 G C TTN Silent p.V4561V 0.03 TCGA-66-2763-01 2 185803755 185803755 C A ZNF804A 3'UTR 0.47 TCGA-66-2763-01 2 187523842 187523842 T A ITGAV Silent p.A599A 0.43 TCGA-66-2763-01 2 212248320 212248320 C A ERBB4 3'UTR 0.45 TCGA-66-2763-01 2 241813423 241813423 G C AGXT Missense_Mutation p.Q208H 0.26 deleterious(0) probably_damaging(0.999) TCGA-66-2763-01 2 43547590 43547590 T A THADA Missense_Mutation p.Q1478L 0.27 tolerated(0.14) benign(0.003) TCGA-66-2763-01 2 48896930 48896930 G C STON1-GTF2A1L Missense_Mutation p.D1054H 0.14 deleterious(0) probably_damaging(0.964) TCGA-66-2763-01 2 50733744 50733744 C A NRXN1 Nonsense_Mutation p.E836* 0.20 TCGA-66-2763-01 2 56599543 56599543 C G CCDC85A Missense_Mutation p.S461C 0.32 tolerated_low_confidence(0.09) benign(0.039) TCGA-66-2763-01 2 73651667 73651667 C G ALMS1 Missense_Mutation p.R292G 0.53 benign(0.001) TCGA-66-2763-01 2 73680984 73680984 C G ALMS1 Missense_Mutation p.L2443V 0.47 probably_damaging(0.988) TCGA-66-2763-01 2 74747070 74747070 C G DQX1 Silent p.L529L 0.24 TCGA-66-2763-01 2 80529775 80529775 C A LRRTM1 Silent p.S390S 0.38 TCGA-66-2763-01 2 80530814 80530814 C A LRRTM1 Missense_Mutation p.R44L 0.48 deleterious(0) possibly_damaging(0.614) TCGA-66-2763-01 2 85133582 85133582 A T TMSB10 3'UTR 0.37 TCGA-66-2763-01 2 96992837 96992837 C A ITPRIPL1 Nonsense_Mutation p.Y164* 0.11 TCGA-66-2763-01 3 100365481 100365481 G A GPR128 Nonsense_Mutation p.W393* 0.10 TCGA-66-2763-01 3 105495385 105495385 G A CBLB Nonsense_Mutation p.R141* 0.19 TCGA-66-2763-01 3 108324207 108324207 G T DZIP3 5'UTR 0.42 TCGA-66-2763-01 3 111780770 111780770 C T TMPRSS7 Missense_Mutation p.P357S 0.16 deleterious(0) probably_damaging(0.983) TCGA-66-2763-01 3 113098309 113098309 C A WDR52 Missense_Mutation p.M714I 0.08 tolerated(0.28) benign(0.017) TCGA-66-2763-01 3 119150879 119150879 T A TMEM39A Missense_Mutation p.L472F 0.16 deleterious(0) probably_damaging(0.998) TCGA-66-2763-01 3 119396168 119396168 A G COX17 5'UTR 0.60 TCGA-66-2763-01 3 129816073 129816073 G A AC083906.2 3'Flank 0.14 TCGA-66-2763-01 3 131261561 131261561 G T CPNE4 Missense_Mutation p.A460D 0.40 deleterious(0) probably_damaging(0.999) TCGA-66-2763-01 3 138739142 138739142 C A PRR23B Missense_Mutation p.G121V 0.45 tolerated(0.11) possibly_damaging(0.824) TCGA-66-2763-01 3 140401761 140401761 C A TRIM42 Missense_Mutation p.H267N 0.36 deleterious(0) probably_damaging(0.998) TCGA-66-2763-01 3 142775291 142775291 G C U2SURP Nonstop_Mutation p.*1030Sext*73 0.41 TCGA-66-2763-01 3 147128309 147128309 C A ZIC1 Missense_Mutation p.A137D 0.34 tolerated(0.07) benign(0.006) TCGA-66-2763-01 3 147128310 147128310 C A ZIC1 Silent p.A137A 0.33 TCGA-66-2763-01 3 156395782 156395782 C G TIPARP Nonsense_Mutation p.S99* 0.18 TCGA-66-2763-01 3 182948762 182948762 T C MCF2L2 Missense_Mutation p.K636E 0.40 tolerated(1) benign(0.048) TCGA-66-2763-01 3 184953216 184953216 T C EHHADH Silent p.T71T 0.59 TCGA-66-2763-01 3 185638958 185638958 C A TRA2B Missense_Mutation p.R219L 0.41 tolerated(0.11) benign(0.079) TCGA-66-2763-01 3 194118141 194118141 C A GP5 Missense_Mutation p.G291C 0.09 deleterious(0.04) benign(0.013) TCGA-66-2763-01 3 194151031 194151031 T C ATP13A3 Missense_Mutation p.M880V 0.08 deleterious(0) possibly_damaging(0.856) TCGA-66-2763-01 3 28454871 28454871 A T ZCWPW2 Silent p.V104V 0.49 TCGA-66-2763-01 3 3111852 3111852 C T IL5RA 3'UTR 0.50 TCGA-66-2763-01 3 38294341 38294341 G A OXSR1 Missense_Mutation p.D515N 0.52 deleterious(0) possibly_damaging(0.479) TCGA-66-2763-01 3 42679873 42679873 C T NKTR Nonsense_Mutation p.R893* 0.14 TCGA-66-2763-01 3 64619205 64619205 T A ADAMTS9 Silent p.I706I 0.45 TCGA-66-2763-01 3 74385767 74385767 C G CNTN3 Silent p.V469V 0.13 TCGA-66-2763-01 3 74411092 74411092 C A CNTN3 Missense_Mutation p.R438M 0.19 deleterious(0.01) possibly_damaging(0.877) TCGA-66-2763-01 3 77526583 77526583 G T ROBO2 Missense_Mutation p.R152L 0.27 deleterious(0.03) benign(0.409) TCGA-66-2763-01 3 88104603 88104603 C T CGGBP1 3'UTR 0.10 TCGA-66-2763-01 3 99515032 99515032 G A COL8A1 3'UTR 0.14 TCGA-66-2763-01 4 113970900 113970900 G T ANK2 Missense_Mutation p.A6S 0.52 benign(0.324) TCGA-66-2763-01 4 119220048 119220048 T C PRSS12 Silent p.K559K 0.16 TCGA-66-2763-01 4 126239263 126239263 C T FAT4 Missense_Mutation p.A566V 0.45 possibly_damaging(0.731) TCGA-66-2763-01 4 134073308 134073308 C A PCDH10 Silent p.T671T 0.50 TCGA-66-2763-01 4 146073750 146073750 T A OTUD4 Missense_Mutation p.D239V 0.52 deleterious(0.04) benign(0.006) TCGA-66-2763-01 4 154502648 154502648 C T KIAA0922 Silent p.N276N 0.36 TCGA-66-2763-01 4 156634713 156634713 G T GUCY1A3 Missense_Mutation p.C517F 0.42 deleterious(0) probably_damaging(1) TCGA-66-2763-01 4 156773401 156773401 G C ASIC5 Missense_Mutation p.A218G 0.39 tolerated(0.38) benign(0.003) TCGA-66-2763-01 4 158257833 158257833 G T GRIA2 Missense_Mutation p.G593V 0.34 deleterious(0.01) probably_damaging(1) TCGA-66-2763-01 4 158257834 158257834 G T GRIA2 Silent p.G593G 0.34 TCGA-66-2763-01 4 158281082 158281082 C G GRIA2 Missense_Mutation p.T693S 0.51 tolerated(1) benign(0.006) TCGA-66-2763-01 4 20715094 20715094 G T PACRGL Missense_Mutation p.A181S 0.26 deleterious(0.05) possibly_damaging(0.596) TCGA-66-2763-01 4 40045443 40045443 T A RP11-333E13.4 RNA 0.25 TCGA-66-2763-01 4 56309861 56309861 G A CLOCK Missense_Mutation p.S632L 0.10 tolerated(0.24) benign(0.021) TCGA-66-2763-01 4 56310047 56310047 G C CLOCK Nonsense_Mutation p.S570* 0.07 TCGA-66-2763-01 4 57221562 57221562 C A AASDH Nonsense_Mutation p.G297* 0.43 TCGA-66-2763-01 4 69811132 69811132 C G UGT2A3 Missense_Mutation p.E252D 0.47 tolerated(0.6) benign(0.11) TCGA-66-2763-01 4 84342850 84342850 A C HELQ Missense_Mutation p.F939V 0.40 deleterious(0.02) benign(0.091) TCGA-66-2763-01 4 8608572 8608574 CGC AGCA CPZ Frame_Shift_Ins p.R339Sfs*18 0.19 TCGA-66-2763-01 4 89679910 89679910 C G FAM13A Missense_Mutation p.W574S 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-66-2763-01 5 112849645 112849645 G A YTHDC2 Missense_Mutation p.G18E 0.70 tolerated_low_confidence(0.12) benign(0.002) TCGA-66-2763-01 5 113831657 113831657 G T KCNN2 Missense_Mutation p.R506S 0.47 deleterious(0) probably_damaging(0.916) TCGA-66-2763-01 5 121187977 121187977 G T FTMT Missense_Mutation p.A107S 0.49 deleterious(0.01) probably_damaging(0.995) TCGA-66-2763-01 5 122272481 122272481 G A SNX24 Missense_Mutation p.R38K 0.44 deleterious(0.02) possibly_damaging(0.714) TCGA-66-2763-01 5 13830718 13830718 G T DNAH5 Silent p.R2017R 0.13 TCGA-66-2763-01 5 140741839 140741839 C T PCDHGB2 Silent p.L713L 0.37 TCGA-66-2763-01 5 140769700 140769700 A T PCDHGB4 Missense_Mutation p.Y750F 0.46 deleterious(0.02) benign(0.111) TCGA-66-2763-01 5 141248635 141248635 C T PCDH1 Silent p.L134L 0.44 TCGA-66-2763-01 5 169679495 169679495 C G LCP2 Missense_Mutation p.W422C 0.35 deleterious(0) probably_damaging(1) TCGA-66-2763-01 5 31799815 31799815 G T PDZD2 Missense_Mutation p.D154Y 0.25 deleterious(0) probably_damaging(1) TCGA-66-2763-01 5 33546195 33546195 C A ADAMTS12 Missense_Mutation p.C1472F 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-66-2763-01 5 35740020 35740020 G T SPEF2 Splice_Site p.X1022_splice 0.15 TCGA-66-2763-01 5 40959662 40959662 C G C7 Missense_Mutation p.S534C 0.14 tolerated(0.14) possibly_damaging(0.897) TCGA-66-2763-01 5 428049 428049 C T AHRR Missense_Mutation p.A301V 0.24 tolerated(0.36) benign(0.072) TCGA-66-2763-01 5 43677883 43677883 C T NNT Missense_Mutation p.L951F 0.10 deleterious(0) possibly_damaging(0.876) TCGA-66-2763-01 5 45645413 45645413 T G HCN1 Missense_Mutation p.K241N 0.06 tolerated(0.05) probably_damaging(0.975) TCGA-66-2763-01 5 71493830 71493830 G T MAP1B Missense_Mutation p.A1550S 0.54 probably_damaging(0.996) TCGA-66-2763-01 5 74893590 74893590 A G POLK Missense_Mutation p.Q835R 0.51 tolerated(0.16) benign(0.022) TCGA-66-2763-01 5 77298536 77298536 C A AP3B1 3'UTR 0.38 TCGA-66-2763-01 5 79084821 79084821 G T CMYA5 Missense_Mutation p.Q3861H 0.46 probably_damaging(0.987) TCGA-66-2763-01 5 81614128 81614128 G T ATP6AP1L 3'UTR 0.54 TCGA-66-2763-01 5 9629449 9629449 G T TAS2R1 Silent p.S232S 0.31 TCGA-66-2763-01 6 105573294 105573294 C A BVES Missense_Mutation p.D171Y 0.44 deleterious(0) possibly_damaging(0.853) TCGA-66-2763-01 6 10894192 10894192 A T SYCP2L Missense_Mutation p.K57N 0.23 deleterious(0) probably_damaging(0.988) TCGA-66-2763-01 6 117641146 117641146 C A ROS1 Missense_Mutation p.R1942L 0.45 deleterious(0) possibly_damaging(0.877) TCGA-66-2763-01 6 128134171 128134171 G T THEMIS Missense_Mutation p.Q539K 0.47 tolerated(0.46) possibly_damaging(0.546) TCGA-66-2763-01 6 131949223 131949223 G T MED23 5'UTR 0.52 TCGA-66-2763-01 6 132910096 132910096 C A TAAR5 Missense_Mutation p.A244S 0.49 tolerated(0.61) benign(0.016) TCGA-66-2763-01 6 133789710 133789710 C G EYA4 Missense_Mutation p.P271A 0.47 deleterious(0.03) benign(0.183) TCGA-66-2763-01 6 133836552 133836552 C G EYA4 Missense_Mutation p.S532C 0.43 tolerated(0.39) probably_damaging(0.99) TCGA-66-2763-01 6 142726876 142726876 C T GPR126 Missense_Mutation p.P727S 0.50 tolerated(0.35) benign(0.012) TCGA-66-2763-01 6 161781192 161781192 C G PARK2 Missense_Mutation p.A405P 0.45 deleterious(0.02) benign(0.09) TCGA-66-2763-01 6 25450634 25450634 A G LRRC16A Silent p.Q179Q 0.27 TCGA-66-2763-01 6 26189072 26189072 T A HIST1H4D Missense_Mutation p.K78I 0.33 deleterious(0) possibly_damaging(0.673) TCGA-66-2763-01 6 29141629 29141629 T C OR2J2 Missense_Mutation p.C73R 0.21 deleterious(0) probably_damaging(0.981) TCGA-66-2763-01 6 31079319 31079319 C T C6orf15 Missense_Mutation p.G273R 0.23 tolerated(0.07) probably_damaging(0.991) TCGA-66-2763-01 6 32187380 32187380 A G NOTCH4 Missense_Mutation p.L500P 0.31 deleterious(0.02) probably_damaging(0.928) TCGA-66-2763-01 6 348862 348862 C A DUSP22 Intron 0.39 TCGA-66-2763-01 6 35473549 35473549 G - TULP1 Frame_Shift_Del p.R361Efs*10 0.31 TCGA-66-2763-01 6 37284591 37284591 G A TBC1D22B Silent p.L426L 0.29 TCGA-66-2763-01 6 41197820 41197820 G A TREML4 Missense_Mutation p.G156R 0.29 tolerated(0.06) benign(0.071) TCGA-66-2763-01 6 43307502 43307502 C T ZNF318 Missense_Mutation p.G1412R 0.20 probably_damaging(1) TCGA-66-2763-01 6 49427215 49427215 T A MUT 5'UTR 0.35 TCGA-66-2763-01 6 51491894 51491894 G T PKHD1 Missense_Mutation p.P3896T 0.17 tolerated(0.31) benign(0.004) TCGA-66-2763-01 6 51892634 51892634 G T PKHD1 Silent p.S1207S 0.18 TCGA-66-2763-01 6 57472440 57472440 A T PRIM2 Intron 0.09 TCGA-66-2763-01 6 57512735 57512735 G T PRIM2 3'UTR 0.05 TCGA-66-2763-01 6 7327090 7327090 T C CAGE1 3'UTR 0.21 TCGA-66-2763-01 6 75875302 75875302 C G COL12A1 Missense_Mutation p.E968D 0.31 probably_damaging(0.975) TCGA-66-2763-01 6 89890084 89890084 G T GABRR1 Nonsense_Mutation p.S358* 0.45 TCGA-66-2763-01 6 90718357 90718357 C G BACH2 Missense_Mutation p.Q69H 0.04 tolerated(0.17) probably_damaging(0.934) TCGA-66-2763-01 7 103230067 103230067 A T RELN Missense_Mutation p.V1374D 0.27 tolerated(0.16) benign(0.209) TCGA-66-2763-01 7 105207724 105207724 A T RINT1 Missense_Mutation p.N782I 0.34 deleterious(0) probably_damaging(0.936) TCGA-66-2763-01 7 107115495 107115495 T A GPR22 Silent p.S330S 0.32 TCGA-66-2763-01 7 123594310 123594310 A G SPAM1 Missense_Mutation p.Y229C 0.35 deleterious(0) probably_damaging(0.989) TCGA-66-2763-01 7 127255261 127255261 C T PAX4 Intron 0.28 TCGA-66-2763-01 7 127255381 127255381 G T PAX4 Intron 0.32 TCGA-66-2763-01 7 131815234 131815234 G A PLXNA4 3'UTR 0.08 TCGA-66-2763-01 7 138529070 138529070 C A KIAA1549 Missense_Mutation p.G1815V 0.16 deleterious(0) possibly_damaging(0.907) TCGA-66-2763-01 7 140301842 140301842 C - DENND2A Frame_Shift_Del p.G119Dfs*10 0.32 TCGA-66-2763-01 7 146536991 146536991 A G CNTNAP2 Missense_Mutation p.I133V 0.23 tolerated(0.19) benign(0.168) TCGA-66-2763-01 7 147092866 147092866 T C CNTNAP2 Missense_Mutation p.I555T 0.30 tolerated(0.61) benign(0.008) TCGA-66-2763-01 7 148964225 148964225 A G ZNF783 Missense_Mutation p.I195M 0.37 tolerated(0.6) benign(0.011) TCGA-66-2763-01 7 150418003 150418003 G T GIMAP1 Missense_Mutation p.G304V 0.27 tolerated_low_confidence(0.35) benign(0.018) TCGA-66-2763-01 7 15240877 15240877 C A AGMO 3'UTR 0.32 TCGA-66-2763-01 7 21826351 21826351 G A DNAH11 Missense_Mutation p.R3243Q 0.04 probably_damaging(0.985) TCGA-66-2763-01 7 21946241 21946241 G A CDCA7L Missense_Mutation p.A233V 0.04 deleterious(0) probably_damaging(0.988) TCGA-66-2763-01 7 22985295 22985295 G A FAM126A Silent p.Y493Y 0.32 TCGA-66-2763-01 7 24854819 24854819 A G OSBPL3 Silent p.F677F 0.33 TCGA-66-2763-01 7 25175513 25175513 C A C7orf31 3'UTR 0.35 TCGA-66-2763-01 7 27134301 27134301 G A HOXA1 Missense_Mutation p.R256C 0.36 deleterious(0) probably_damaging(0.988) TCGA-66-2763-01 7 27224829 27224829 T C HOXA11 5'UTR 0.40 TCGA-66-2763-01 7 30693149 30693149 G C CRHR2 Missense_Mutation p.A415G 0.28 deleterious(0.02) possibly_damaging(0.45) TCGA-66-2763-01 7 30791833 30791833 A G INMT Missense_Mutation p.T23A 0.25 tolerated(0.13) probably_damaging(0.997) TCGA-66-2763-01 7 31018795 31018795 G C GHRHR Missense_Mutation p.R403T 0.25 deleterious(0.02) benign(0.33) TCGA-66-2763-01 7 31617870 31617870 G T CCDC129 Missense_Mutation p.G357V 0.08 tolerated(0.09) benign(0.006) TCGA-66-2763-01 7 31890253 31890253 A T PDE1C Splice_Site p.X344_splice 0.30 TCGA-66-2763-01 7 44155788 44155788 C A POLD2 Missense_Mutation p.M315I 0.26 deleterious(0.01) probably_damaging(0.909) TCGA-66-2763-01 7 45932716 45932716 C A IGFBP1 3'UTR 0.38 TCGA-66-2763-01 7 50674067 50674067 C T GRB10 Silent p.R413R 0.22 TCGA-66-2763-01 7 55231501 55231501 C T EGFR Silent p.I569I 0.28 TCGA-66-2763-01 7 71571265 71571265 A T CALN1 Missense_Mutation p.F87I 0.24 deleterious(0) benign(0.146) TCGA-66-2763-01 7 87174182 87174182 C G ABCB1 Missense_Mutation p.G674A 0.30 tolerated(0.57) benign(0.001) TCGA-66-2763-01 7 87196138 87196138 C T ABCB1 Missense_Mutation p.V165M 0.36 tolerated(0.05) benign(0.079) TCGA-66-2763-01 7 87811361 87811361 A G ADAM22 Intron 0.09 TCGA-66-2763-01 7 88963284 88963284 C G ZNF804B Missense_Mutation p.H330D 0.35 deleterious(0.02) benign(0.391) TCGA-66-2763-01 7 89901183 89901183 A T C7orf63 Missense_Mutation p.L257F 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-66-2763-01 7 93090230 93090230 T A CALCR Missense_Mutation p.H218L 0.26 deleterious(0) probably_damaging(0.999) TCGA-66-2763-01 7 94176441 94176441 A T CASD1 Missense_Mutation p.K556I 0.33 deleterious(0) probably_damaging(0.917) TCGA-66-2763-01 7 94293676 94293676 C A PEG10 Missense_Mutation p.P270T 0.17 deleterious(0.01) probably_damaging(0.948) TCGA-66-2763-01 7 94931587 94931587 A T PON1 Missense_Mutation p.L280H 0.20 deleterious(0) probably_damaging(0.943) TCGA-66-2763-01 7 94931588 94931588 G T PON1 Missense_Mutation p.L280I 0.20 tolerated(0.93) benign(0.259) TCGA-66-2763-01 7 99022625 99022625 G C ATP5J2-PTCD1 Silent p.L559L 0.35 TCGA-66-2763-01 8 105361702 105361702 G T DCSTAMP Missense_Mutation p.V308L 0.20 tolerated(0.46) benign(0.075) TCGA-66-2763-01 8 113256797 113256797 T A CSMD3 Missense_Mutation p.S3410C 0.44 tolerated(0.06) possibly_damaging(0.765) TCGA-66-2763-01 8 113304920 113304920 A T CSMD3 Silent p.P2878P 0.22 TCGA-66-2763-01 8 143822395 143822395 G C SLURP1 3'UTR 0.28 TCGA-66-2763-01 8 145634410 145634410 G C CPSF1 Missense_Mutation p.R45G 0.61 tolerated(0.34) benign(0.001) TCGA-66-2763-01 8 22138668 22138668 G A PIWIL2 Silent p.L78L 0.47 TCGA-66-2763-01 8 25897593 25897593 T A EBF2 Nonsense_Mutation p.K145* 0.04 TCGA-66-2763-01 8 26722124 26722124 G T ADRA1A Silent p.S121S 0.32 TCGA-66-2763-01 8 26722125 26722125 G T ADRA1A Missense_Mutation p.S121Y 0.32 deleterious(0) probably_damaging(1) TCGA-66-2763-01 8 35583824 35583824 G T UNC5D Missense_Mutation p.Q486H 0.09 tolerated(0.64) benign(0.002) TCGA-66-2763-01 8 41519056 41519056 C A ANK1 Intron 0.21 TCGA-66-2763-01 8 52320773 52320773 C T PXDNL Silent p.S1137S 0.10 TCGA-66-2763-01 8 52321320 52321320 A T PXDNL Missense_Mutation p.L955Q 0.30 deleterious(0.04) probably_damaging(0.955) TCGA-66-2763-01 8 52773687 52773687 C A PCMTD1 Nonsense_Mutation p.E9* 0.55 TCGA-66-2763-01 8 55541589 55541589 G T RP1 Missense_Mutation p.G1716V 0.19 tolerated(0.09) benign(0.025) TCGA-66-2763-01 8 59496619 59496619 T C NSMAF 3'UTR 0.17 TCGA-66-2763-01 8 63976811 63976811 A G TTPA Missense_Mutation p.V206A 0.16 tolerated(0.05) possibly_damaging(0.776) TCGA-66-2763-01 8 67590143 67590143 C T C8orf44 Missense_Mutation p.P67L 0.25 deleterious_low_confidence(0.01) probably_damaging(0.958) TCGA-66-2763-01 8 68939533 68939533 T C PREX2 Missense_Mutation p.I173T 0.23 deleterious(0) probably_damaging(0.994) TCGA-66-2763-01 8 75898239 75898239 G A CRISPLD1 Missense_Mutation p.R6Q 0.24 tolerated(0.62) benign(0) TCGA-66-2763-01 8 77766792 77766792 G A ZFHX4 Silent p.P2545P 0.04 TCGA-66-2763-01 8 88886263 88886263 G T DCAF4L2 5'UTR 0.22 TCGA-66-2763-01 8 92983053 92983053 G A RUNX1T1 Missense_Mutation p.R469C 0.31 deleterious(0) probably_damaging(1) TCGA-66-2763-01 8 95866063 95866063 A G INTS8 Missense_Mutation p.I558V 0.42 tolerated(0.31) benign(0.061) TCGA-66-2763-01 8 99149122 99149122 G C POP1 Silent p.L434L 0.23 TCGA-66-2763-01 9 107556765 107556765 C A ABCA1 Silent p.L1803L 0.64 TCGA-66-2763-01 9 133901778 133901778 C A LAMC3 Nonsense_Mutation p.Y160* 0.57 TCGA-66-2763-01 9 137642705 137642705 C A COL5A1 Missense_Mutation p.Q547K 0.29 probably_damaging(0.949) TCGA-66-2763-01 9 139802569 139802569 G T TRAF2 Silent p.A138A 0.42 TCGA-66-2763-01 9 14801698 14801698 G A FREM1 Nonsense_Mutation p.Q1216* 0.25 TCGA-66-2763-01 9 17416046 17416046 G T CNTLN Missense_Mutation p.L991F 0.34 deleterious(0) probably_damaging(0.992) TCGA-66-2763-01 9 21333175 21333175 C G KLHL9 Missense_Mutation p.E562Q 0.26 tolerated(0.33) benign(0.425) TCGA-66-2763-01 9 43626970 43626970 G A SPATA31A6 Missense_Mutation p.P573S 0.46 tolerated(0.35) benign(0.227) TCGA-66-2763-01 9 84609748 84609748 C G SPATA31D1 Missense_Mutation p.Q1455E 0.43 tolerated(0.16) possibly_damaging(0.894) TCGA-66-2763-01 9 94493272 94493272 G T ROR2 Missense_Mutation p.P368H 0.47 deleterious(0) probably_damaging(0.998) TCGA-66-2763-01 9 95077001 95077001 C A NOL8 Missense_Mutation p.A636S 0.52 deleterious(0.05) benign(0.01) TCGA-66-2763-01 X 100297169 100297169 G A TRMT2B Missense_Mutation p.P37L 0.76 deleterious(0.05) benign(0.002) TCGA-66-2763-01 X 102755638 102755638 T A RAB40A Missense_Mutation p.K16M 0.78 deleterious(0) probably_damaging(1) TCGA-66-2763-01 X 105075071 105075071 G T NRK Missense_Mutation p.D28Y 0.66 deleterious_low_confidence(0.02) possibly_damaging(0.72) TCGA-66-2763-01 X 110490620 110490620 G A CAPN6 Silent p.T573T 0.09 TCGA-66-2763-01 X 115304522 115304522 G T AGTR2 Missense_Mutation p.R330L 0.72 tolerated(0.67) benign(0.131) TCGA-66-2763-01 X 115582714 115582714 T A SLC6A14 Missense_Mutation p.D346E 0.67 deleterious(0) probably_damaging(0.998) TCGA-66-2763-01 X 129149114 129149114 G T BCORL1 Missense_Mutation p.R789L 0.61 probably_damaging(0.967) TCGA-66-2763-01 X 132795841 132795841 G A GPC3 Nonsense_Mutation p.Q467* 0.10 TCGA-66-2763-01 X 153678268 153678268 G A FAM50A Missense_Mutation p.R273Q 0.21 deleterious(0.01) probably_damaging(0.978) TCGA-66-2763-01 X 155004441 155004441 C A SPRY3 3'UTR 0.56 TCGA-66-2763-01 X 16170572 16170572 T A GRPR Missense_Mutation p.F320Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-66-2763-01 X 16858001 16858001 G T TXLNG Nonsense_Mutation p.E404* 0.24 TCGA-66-2763-01 X 18283770 18283770 G C SCML2 Missense_Mutation p.P295A 0.20 tolerated(0.17) benign(0.103) TCGA-66-2763-01 X 21674689 21674689 C A KLHL34 Silent p.T406T 0.43 TCGA-66-2763-01 X 31165523 31165523 C A DMD Missense_Mutation p.A3556S 0.26 possibly_damaging(0.567) TCGA-66-2763-01 X 41000371 41000371 C A USP9X Nonsense_Mutation p.S308* 0.43 TCGA-66-2763-01 X 41383258 41383258 A G CASK Silent p.F845F 0.18 TCGA-66-2763-01 X 45010844 45010844 G T CXorf36 3'UTR 0.17 TCGA-66-2763-01 X 47101705 47101705 G T USP11 Missense_Mutation p.Q511H 0.17 deleterious(0.02) probably_damaging(1) TCGA-66-2763-01 X 48418720 48418720 G A TBC1D25 Missense_Mutation p.G475D 0.15 tolerated(0.68) benign(0.073) TCGA-66-2763-01 X 48853675 48853675 G C GRIPAP1 Missense_Mutation p.A98G 0.13 benign(0.275) TCGA-66-2763-01 X 49065139 49065139 C A CACNA1F Silent p.T1664T 0.18 TCGA-66-2763-01 X 49079264 49079264 A T CACNA1F Missense_Mutation p.Y718N 0.14 deleterious(0.02) probably_damaging(0.985) TCGA-66-2763-01 X 50114795 50114795 G T DGKK RNA 0.39 TCGA-66-2763-01 X 53564623 53564623 C A HUWE1 Missense_Mutation p.G4011W 0.43 unknown(0) TCGA-66-2763-01 X 54265438 54265438 C T WNK3 Missense_Mutation p.G1249E 0.30 deleterious(0) possibly_damaging(0.462) TCGA-66-2763-01 X 54321179 54321179 A T WNK3 Silent p.A500A 0.19 TCGA-66-2763-01 X 54569759 54569759 G T GNL3L Silent p.L170L 0.20 TCGA-66-2763-01 X 54784427 54784427 G T ITIH6 Missense_Mutation p.P694T 0.11 tolerated(0.46) benign(0.01) TCGA-66-2763-01 X 6451848 6451848 C A VCX3A Nonsense_Mutation p.E167* 0.14 TCGA-66-2763-01 X 69665408 69665408 G T DLG3 Missense_Mutation p.Q119H 0.46 tolerated(0.14) benign(0.122) TCGA-66-2763-01 X 73043319 73043319 C T XIST RNA 0.50 TCGA-66-2763-01 X 73071841 73071841 C A XIST RNA 0.44 TCGA-66-2765-01 10 120802059 120802059 G A EIF3A Silent p.N991N 0.24 TCGA-66-2765-01 10 15254774 15254774 G A FAM171A1 3'UTR 0.07 TCGA-66-2765-01 10 38343662 38343662 G C ZNF33A Missense_Mutation p.E204Q 0.20 tolerated(0.07) benign(0.386) TCGA-66-2765-01 10 98383279 98383279 C A PIK3AP1 Missense_Mutation p.S562I 0.22 deleterious(0.04) benign(0.146) TCGA-66-2765-01 11 101765758 101765758 T C ANGPTL5 Missense_Mutation p.I233M 0.39 deleterious(0.04) probably_damaging(0.949) TCGA-66-2765-01 11 102080293 102080293 C A YAP1 Missense_Mutation p.Q344K 0.72 deleterious(0.02) benign(0.033) TCGA-66-2765-01 11 17191060 17191060 C G PIK3C2A Missense_Mutation p.V77L 0.03 tolerated_low_confidence(0.05) benign(0.034) TCGA-66-2765-01 11 20673901 20673901 T A SLC6A5 Missense_Mutation p.W713R 0.35 deleterious(0) probably_damaging(0.996) TCGA-66-2765-01 11 33182885 33182885 T A CSTF3 5'UTR 0.34 TCGA-66-2765-01 11 5068546 5068546 G T OR52J3 Missense_Mutation p.R264L 0.18 deleterious(0.01) probably_damaging(1) TCGA-66-2765-01 11 55433015 55433015 T A OR4C6 Missense_Mutation p.C125S 0.38 deleterious_low_confidence(0) probably_damaging(0.911) TCGA-66-2765-01 11 62931543 62931543 C A SLC22A25 Missense_Mutation p.G466V 0.18 tolerated(0.07) benign(0.01) TCGA-66-2765-01 11 63764702 63764703 GA T OTUB1 Frame_Shift_Del p.E202Cfs*185 0.23 TCGA-66-2765-01 11 99715991 99715991 G T CNTN5 Missense_Mutation p.A192S 0.19 deleterious(0.01) benign(0.305) TCGA-66-2765-01 12 101702101 101702101 C G UTP20 Missense_Mutation p.P712A 0.24 deleterious(0.04) benign(0.188) TCGA-66-2765-01 12 118112090 118112090 G C KSR2 Intron 0.25 TCGA-66-2765-01 12 118464747 118464747 C A RFC5 Silent p.T239T 0.28 TCGA-66-2765-01 12 124352542 124352545 CTGC ATG DNAH10 Nonsense_Mutation p.Y2347* 0.28 TCGA-66-2765-01 12 20852496 20852496 A T SLCO1C1 5'UTR 0.24 TCGA-66-2765-01 12 49431061 49431061 G A KMT2D Nonsense_Mutation p.Q3360* 0.31 TCGA-66-2765-01 12 49438218 49438218 C G KMT2D Missense_Mutation p.S1684T 0.21 possibly_damaging(0.525) TCGA-66-2765-01 12 72936106 72936106 G T TRHDE Missense_Mutation p.M541I 0.25 tolerated(0.11) benign(0.068) TCGA-66-2765-01 13 111143635 111143635 G C COL4A2 Silent p.G1134G 0.22 TCGA-66-2765-01 13 48669218 48669218 C T MED4 5'UTR 0.24 TCGA-66-2765-01 14 20296344 20296344 T C OR4N2 Missense_Mutation p.V246A 0.09 deleterious(0.01) benign(0.37) TCGA-66-2765-01 14 20345187 20345187 G T OR4K2 Missense_Mutation p.C254F 0.08 deleterious(0.01) possibly_damaging(0.776) TCGA-66-2765-01 14 21991220 21991220 G C SALL2 Missense_Mutation p.P881R 0.24 tolerated(0.79) benign(0.001) TCGA-66-2765-01 14 58604947 58604947 C G C14orf37 Missense_Mutation p.G377A 0.19 tolerated(0.07) benign(0.01) TCGA-66-2765-01 14 75475874 75475874 G C EIF2B2 Missense_Mutation p.D347H 0.27 tolerated(0.06) benign(0.165) TCGA-66-2765-01 15 25422021 25422021 T G SNORD115-4 RNA 0.05 TCGA-66-2765-01 15 45400380 45400380 G C DUOX2 Missense_Mutation p.S480C 0.25 deleterious(0) probably_damaging(0.941) TCGA-66-2765-01 16 30364863 30364863 G A CD2BP2 Missense_Mutation p.R212W 0.26 tolerated(0.12) benign(0.28) TCGA-66-2765-01 16 30544471 30544471 T C ZNF747 Missense_Mutation p.Q162R 0.26 deleterious_low_confidence(0) benign(0.403) TCGA-66-2765-01 16 3367720 3367720 C T ZNF75A Missense_Mutation p.H248Y 0.23 tolerated(0.44) benign(0.008) TCGA-66-2765-01 16 50324372 50324372 C T ADCY7 Missense_Mutation p.P59L 0.20 tolerated(0.68) benign(0.007) TCGA-66-2765-01 16 85015506 85015506 C A ZDHHC7 Missense_Mutation p.C174F 0.25 deleterious(0) possibly_damaging(0.789) TCGA-66-2765-01 17 15619753 15619753 G T ZNF286A Nonsense_Mutation p.E239* 0.45 TCGA-66-2765-01 17 40859999 40859999 T A EZH1 Missense_Mutation p.K546M 0.04 deleterious(0) probably_damaging(0.996) TCGA-66-2765-01 17 48695601 48695601 C A CACNA1G Missense_Mutation p.P1775H 0.46 deleterious(0.02) benign(0.208) TCGA-66-2765-01 17 48764928 48764928 C G ABCC3 Missense_Mutation p.R1438G 0.45 deleterious(0) probably_damaging(0.922) TCGA-66-2765-01 17 7576851 7576851 A T TP53 Splice_Site p.X331_splice 0.46 TCGA-66-2765-01 18 61569664 61569664 G A SERPINB2 Missense_Mutation p.M235I 0.24 deleterious(0) probably_damaging(0.998) TCGA-66-2765-01 19 17411739 17411739 C G ABHD8 Silent p.A229A 0.26 TCGA-66-2765-01 19 19654937 19654937 G A CILP2 Missense_Mutation p.S528N 0.25 tolerated(0.31) benign(0.081) TCGA-66-2765-01 19 24102171 24102171 C T ZNF726 Intron 0.22 TCGA-66-2765-01 19 50310553 50310553 G T FUZ Missense_Mutation p.T371N 0.22 tolerated(0.06) benign(0.02) TCGA-66-2765-01 19 53762406 53762406 T A VN1R2 Missense_Mutation p.S260T 0.11 tolerated(0.14) benign(0.295) TCGA-66-2765-01 19 54866700 54866700 C T LAIR1 3'UTR 0.36 TCGA-66-2765-01 19 7747477 7747477 G T TRAPPC5 Missense_Mutation p.R113L 0.27 tolerated(0.1) benign(0.001) TCGA-66-2765-01 1 110085901 110085901 A G GPR61 Missense_Mutation p.D86G 0.22 deleterious(0) probably_damaging(0.999) TCGA-66-2765-01 1 11318609 11318609 G C MTOR Missense_Mutation p.N68K 0.27 deleterious(0) probably_damaging(0.994) TCGA-66-2765-01 1 13448272 13448272 G A PRAMEF13 Silent p.T401T 0.27 TCGA-66-2765-01 1 151787406 151787406 G A RORC Missense_Mutation p.A265V 0.22 tolerated(0.86) benign(0.002) TCGA-66-2765-01 1 152283373 152283373 C T FLG Missense_Mutation p.G1330D 0.21 probably_damaging(0.931) TCGA-66-2765-01 1 156639850 156639850 G T NES Missense_Mutation p.P1377H 0.22 deleterious(0) benign(0.003) TCGA-66-2765-01 1 161046204 161046204 T G PVRL4 Missense_Mutation p.E264D 0.26 tolerated(0.06) possibly_damaging(0.631) TCGA-66-2765-01 1 161726673 161726673 A G DUSP12 Missense_Mutation p.H320R 0.24 deleterious(0) probably_damaging(0.999) TCGA-66-2765-01 1 17708501 17708501 G T PADI6 RNA 0.25 TCGA-66-2765-01 1 180010311 180010311 G A CEP350 Silent p.L1383L 0.22 TCGA-66-2765-01 1 22987513 22987513 C - C1QB Frame_Shift_Del p.L134Cfs*12 0.26 TCGA-66-2765-01 1 247588376 247588376 C T NLRP3 Missense_Mutation p.T544M 0.21 tolerated(0.11) benign(0.11) TCGA-66-2765-01 1 55524240 55524240 G A PCSK9 Missense_Mutation p.A475T 0.17 tolerated(0.12) benign(0.155) TCGA-66-2765-01 1 55545265 55545265 A G USP24 Silent p.H2382H 0.25 TCGA-66-2765-01 20 10280021 10280021 C T SNAP25 Silent p.I171I 0.23 TCGA-66-2765-01 20 33582189 33582189 C T MYH7B Silent p.A937A 0.31 TCGA-66-2765-01 20 42788493 42788493 G T JPH2 Missense_Mutation p.L312I 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-66-2765-01 20 46295097 46295097 G T SULF2 Missense_Mutation p.P571H 0.22 tolerated(0.22) benign(0.003) TCGA-66-2765-01 20 47835947 47835947 C T DDX27 Nonsense_Mutation p.Q19* 0.27 TCGA-66-2765-01 20 61512601 61512601 C T DIDO1 Silent p.E1569E 0.28 TCGA-66-2765-01 20 62737655 62737655 A G NPBWR2 Missense_Mutation p.L177P 0.16 deleterious(0) possibly_damaging(0.828) TCGA-66-2765-01 22 23090379 23090380 - A IGLV3-16 Frame_Shift_Ins p.L107Tfs*? 0.25 TCGA-66-2765-01 22 36052428 36052428 A C APOL6 Intron 0.24 TCGA-66-2765-01 2 130914906 130914906 C A SMPD4 Missense_Mutation p.A378S 0.24 tolerated(0.33) benign(0.033) TCGA-66-2765-01 2 135616876 135616876 C A ACMSD Silent p.R50R 0.24 TCGA-66-2765-01 2 136587206 136587206 C T LCT Missense_Mutation p.C254Y 0.18 deleterious(0) probably_damaging(0.982) TCGA-66-2765-01 2 149247999 149247999 C G MBD5 Missense_Mutation p.P1367A 0.20 tolerated(0.09) unknown(0) TCGA-66-2765-01 2 155711815 155711815 G T KCNJ3 Missense_Mutation p.R499L 0.19 deleterious_low_confidence(0) possibly_damaging(0.645) TCGA-66-2765-01 2 170092442 170092442 T C LRP2 Missense_Mutation p.R1610G 0.21 benign(0.206) TCGA-66-2765-01 2 179474495 179474495 G T TTN Missense_Mutation p.Q17219K 0.25 TCGA-66-2765-01 2 179571596 179571596 G A TTN Silent p.V9709V 0.15 TCGA-66-2765-01 2 234526420 234526420 G C UGT1A8 Missense_Mutation p.A23P 0.16 deleterious(0.03) benign(0.043) TCGA-66-2765-01 3 101383876 101383876 G A ZBTB11 Nonsense_Mutation p.R519* 0.12 TCGA-66-2765-01 3 140401373 140401373 C T TRIM42 Silent p.N137N 0.16 TCGA-66-2765-01 3 151463350 151463350 C A AADACL2 Missense_Mutation p.A162D 0.02 tolerated(0.45) benign(0.011) TCGA-66-2765-01 3 23541139 23541139 A T UBE2E2 Missense_Mutation p.T90S 0.32 deleterious(0.04) benign(0.126) TCGA-66-2765-01 4 163032473 163032473 C T FSTL5 Missense_Mutation p.G26R 0.22 tolerated_low_confidence(0.36) benign(0.022) TCGA-66-2765-01 5 133644403 133644403 C T CDKL3 Silent p.L299L 0.29 TCGA-66-2765-01 6 144416251 144416251 G A SF3B5 3'UTR 0.20 TCGA-66-2765-01 6 26027399 26027399 G C HIST1H4B Missense_Mutation p.Q28E 0.12 tolerated(0.05) benign(0.091) TCGA-66-2765-01 6 47681951 47681951 G A GPR115 Missense_Mutation p.V324I 0.18 tolerated(1) benign(0.004) TCGA-66-2765-01 6 5004203 5004203 G A RPP40 Missense_Mutation p.R12W 0.38 deleterious(0) probably_damaging(0.998) TCGA-66-2765-01 6 80203424 80203424 C A LCA5 Missense_Mutation p.R255L 0.13 deleterious(0) probably_damaging(1) TCGA-66-2765-01 6 97694501 97694501 T A MMS22L Intron 0.14 TCGA-66-2765-01 7 121753257 121753257 C A AASS Missense_Mutation p.C398F 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-66-2765-01 7 151879142 151879142 G A KMT2C Missense_Mutation p.P1935S 0.23 benign(0.014) TCGA-66-2765-01 7 20738138 20738138 C T ABCB5 Missense_Mutation p.P707S 0.17 deleterious(0) probably_damaging(0.995) TCGA-66-2765-01 7 33061712 33061712 C G NT5C3A Splice_Site p.X108_splice 0.27 TCGA-66-2765-01 7 4185390 4185391 CC T SDK1 Frame_Shift_Del p.P1422Lfs*13 0.21 TCGA-66-2765-01 7 73461084 73461084 C G ELN Silent p.A210A 0.22 TCGA-66-2765-01 7 99769784 99769784 C A GPC2 Missense_Mutation p.A317S 0.26 tolerated(0.1) benign(0.209) TCGA-66-2765-01 8 10383111 10383111 G A PRSS55 Missense_Mutation p.V6M 0.16 deleterious(0.05) benign(0.015) TCGA-66-2765-01 8 132999873 132999873 C A EFR3A Missense_Mutation p.N663K 0.20 tolerated(0.14) benign(0.062) TCGA-66-2765-01 8 28209072 28209072 C G ZNF395 Silent p.G391G 0.27 TCGA-66-2765-01 8 97620689 97620689 G T SDC2 Missense_Mutation p.V145F 0.17 deleterious(0) probably_damaging(0.999) TCGA-66-2765-01 9 131133609 131133609 C T URM1 5'UTR 0.25 TCGA-66-2765-01 9 13183448 13183448 T C MPDZ Missense_Mutation p.Y873C 0.26 deleterious(0.02) possibly_damaging(0.804) TCGA-66-2765-01 9 32408522 32408522 G A ACO1 Missense_Mutation p.A93T 0.12 deleterious(0.05) probably_damaging(0.916) TCGA-66-2765-01 9 35403942 35403942 G A UNC13B Missense_Mutation p.R1563Q 0.04 deleterious(0) probably_damaging(0.97) TCGA-66-2765-01 9 84606081 84606081 G A SPATA31D1 Silent p.K232K 0.26 TCGA-66-2765-01 9 90497821 90497821 C T SPATA31E1 Silent p.V5V 0.25 TCGA-66-2765-01 9 98775342 98775342 G T ERCC6L2 Nonsense_Mutation p.E476* 0.31 TCGA-66-2765-01 X 107449748 107449748 T A COL4A6 Missense_Mutation p.Q204H 0.56 unknown(0) TCGA-66-2765-01 X 146353861 146353861 C T MIR510 RNA 0.47 TCGA-66-2765-01 X 18725907 18725907 G A PPEF1 Missense_Mutation p.C3Y 0.33 deleterious(0) probably_damaging(0.99) TCGA-66-2765-01 X 34149040 34149040 A G FAM47A Silent p.T452T 0.07 TCGA-66-2765-01 X 50341478 50341478 C G SHROOM4 Missense_Mutation p.G1334R 0.53 deleterious(0) probably_damaging(0.998) TCGA-66-2765-01 X 70349706 70349706 G A MED12 Splice_Site p.X1289_splice 0.10 TCGA-66-2766-01 10 103989121 103989121 A T ELOVL3 3'UTR 0.73 TCGA-66-2766-01 10 15561362 15561362 G T ITGA8 Missense_Mutation p.P1011Q 0.36 deleterious(0.01) probably_damaging(0.98) TCGA-66-2766-01 10 27537245 27537245 C T RP11-85G18.6 Intron 0.34 TCGA-66-2766-01 10 27538342 27538342 G T RP11-85G18.6 Intron 0.35 TCGA-66-2766-01 10 27538343 27538343 G T RP11-85G18.6 Intron 0.35 TCGA-66-2766-01 10 31133898 31133898 C T ZNF438 Missense_Mutation p.E827K 0.18 tolerated(0.09) benign(0.077) TCGA-66-2766-01 10 32309970 32309970 T A KIF5B Missense_Mutation p.K728N 0.62 tolerated(0.08) possibly_damaging(0.794) TCGA-66-2766-01 10 43606776 43606776 C T RET Missense_Mutation p.S462L 0.28 tolerated(0.62) benign(0.081) TCGA-66-2766-01 10 5037625 5037625 C G AKR1C2 Missense_Mutation p.L244F 0.15 deleterious(0) possibly_damaging(0.771) TCGA-66-2766-01 10 71146157 71146157 G T HK1 Missense_Mutation p.A644S 0.21 deleterious(0) possibly_damaging(0.88) TCGA-66-2766-01 10 73437260 73437260 T A CDH23 Missense_Mutation p.L113Q 0.15 deleterious(0) probably_damaging(0.996) TCGA-66-2766-01 10 79584220 79584220 T A DLG5 Silent p.A768A 0.29 TCGA-66-2766-01 10 79784336 79784336 C G POLR3A Missense_Mutation p.E206Q 0.26 deleterious(0.03) benign(0.141) TCGA-66-2766-01 10 84118601 84118601 G A NRG3 Silent p.L310L 0.18 TCGA-66-2766-01 10 88702234 88702234 G A MMRN2 Silent p.D769D 0.19 TCGA-66-2766-01 10 93135 93135 C A TUBB8 Silent p.T399T 0.21 TCGA-66-2766-01 10 98588498 98588498 T C LCOR 5'Flank 0.70 TCGA-66-2766-01 11 105009724 105009724 A T CARD18 Nonsense_Mutation p.L30* 0.74 TCGA-66-2766-01 11 112104345 112104345 G T PTS 3'UTR 0.68 TCGA-66-2766-01 11 112104346 112104346 G T PTS 3'UTR 0.67 TCGA-66-2766-01 11 117342716 117342716 A T DSCAML1 Missense_Mutation p.S1001T 0.28 tolerated(0.13) probably_damaging(0.999) TCGA-66-2766-01 11 1221978 1221978 C G MUC5AC RNA 0.40 TCGA-66-2766-01 11 125542464 125542464 C G ACRV1 3'UTR 0.36 TCGA-66-2766-01 11 1263098 1263098 C G MUC5B Missense_Mutation p.T1663R 0.46 unknown(0) TCGA-66-2766-01 11 1264937 1264937 C G MUC5B Missense_Mutation p.T2276S 0.32 possibly_damaging(0.55) TCGA-66-2766-01 11 1273698 1273698 C T MUC5B Missense_Mutation p.P4997S 0.33 unknown(0) TCGA-66-2766-01 11 18231532 18231532 G T RP11-113D6.10 Silent p.T106T 0.38 TCGA-66-2766-01 11 33744102 33744102 G A CD59 Intron 0.48 TCGA-66-2766-01 11 3392296 3392296 G A ZNF195 Silent p.L45L 0.19 TCGA-66-2766-01 11 43429001 43429001 G C TTC17 Missense_Mutation p.L646F 0.16 tolerated(0.09) benign(0.049) TCGA-66-2766-01 11 4624567 4624585 CCCACTGCAAGAGACAAAA - TRIM68 Splice_Site p.X143_splice 0.40 TCGA-66-2766-01 11 46717598 46717598 C G ARHGAP1 Silent p.L20L 0.42 TCGA-66-2766-01 11 490429 490429 A G PTDSS2 Silent p.T437T 0.75 TCGA-66-2766-01 11 5344605 5344605 T C OR51B2 Missense_Mutation p.H308R 0.36 tolerated(0.44) benign(0.001) TCGA-66-2766-01 11 55135615 55135615 C T OR4A15 Missense_Mutation p.P86S 0.51 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-66-2766-01 11 56184900 56184900 G T OR5R1 Missense_Mutation p.T270K 0.49 tolerated(0.05) probably_damaging(0.999) TCGA-66-2766-01 11 57982280 57982280 A G OR1S1 Missense_Mutation p.I22V 0.53 tolerated(1) benign(0.004) TCGA-66-2766-01 11 58126543 58126543 G T OR5B17 5'Flank 0.24 TCGA-66-2766-01 11 58190240 58190240 A C OR5B2 Silent p.S165S 0.11 TCGA-66-2766-01 11 5877992 5877992 T A OR52E8 Missense_Mutation p.K314M 0.44 deleterious(0) benign(0.333) TCGA-66-2766-01 11 59210735 59210735 G C OR5A1 Missense_Mutation p.V32L 0.26 tolerated(0.34) benign(0.003) TCGA-66-2766-01 11 59410359 59410359 C T PATL1 Silent p.Q681Q 0.27 TCGA-66-2766-01 11 59631459 59631459 G T TCN1 Silent p.S60S 0.46 TCGA-66-2766-01 11 61548730 61548730 C T MYRF Missense_Mutation p.P898L 0.57 tolerated(0.22) benign(0.001) TCGA-66-2766-01 11 6190650 6190650 C T OR52B2 Missense_Mutation p.E303K 0.45 tolerated(0.15) benign(0.007) TCGA-66-2766-01 11 62294756 62294756 T A AHNAK Missense_Mutation p.D2378V 0.54 benign(0.215) TCGA-66-2766-01 11 62415255 62415255 G T INTS5 Nonsense_Mutation p.S766* 0.26 TCGA-66-2766-01 11 62521022 62521022 G C ZBTB3 Missense_Mutation p.R89G 0.59 deleterious(0) probably_damaging(0.999) TCGA-66-2766-01 11 6292780 6292780 G C CCKBR 3'UTR 0.40 TCGA-66-2766-01 11 63706466 63706466 G A NAA40 5'Flank 0.29 TCGA-66-2766-01 11 64065659 64065659 G A KCNK4 Missense_Mutation p.A247T 0.57 deleterious(0.01) probably_damaging(0.999) TCGA-66-2766-01 11 64326618 64326618 G A SLC22A11 Silent p.V135V 0.27 TCGA-66-2766-01 11 65622856 65622856 T A CFL1 Missense_Mutation p.E151V 0.54 deleterious(0.03) benign(0.303) TCGA-66-2766-01 11 66082624 66082624 G A CD248 Silent p.S625S 0.58 TCGA-66-2766-01 11 67842266 67842266 A G CHKA Missense_Mutation p.M183T 0.27 deleterious(0) probably_damaging(0.999) TCGA-66-2766-01 11 70319024 70319024 C G SHANK2 Missense_Mutation p.G1835R 0.52 deleterious(0) probably_damaging(0.989) TCGA-66-2766-01 11 76253386 76253386 G C C11orf30 Missense_Mutation p.G895A 0.20 tolerated_low_confidence(0.29) probably_damaging(0.981) TCGA-66-2766-01 11 7672958 7672958 C T PPFIBP2 Silent p.L773L 0.45 TCGA-66-2766-01 11 78369701 78369701 T G TENM4 Missense_Mutation p.K2571T 0.31 tolerated(0.23) benign(0.027) TCGA-66-2766-01 11 8016065 8016065 G T EIF3F Splice_Site p.X249_splice 0.42 TCGA-66-2766-01 11 82905656 82905656 C T ANKRD42 5'UTR 0.54 TCGA-66-2766-01 11 88780705 88780705 G C GRM5 Missense_Mutation p.F112L 0.33 tolerated(0.14) probably_damaging(0.997) TCGA-66-2766-01 11 94113341 94113341 C A GPR83 Missense_Mutation p.V416L 0.68 deleterious(0.01) benign(0.011) TCGA-66-2766-01 11 99941169 99941169 G T CNTN5 Missense_Mutation p.W392C 0.62 deleterious(0.01) probably_damaging(0.997) TCGA-66-2766-01 12 105150991 105150991 G T CHST11 Missense_Mutation p.V157F 0.74 deleterious(0.05) benign(0.417) TCGA-66-2766-01 12 105589265 105589265 T C APPL2 Missense_Mutation p.I376M 0.25 deleterious(0) possibly_damaging(0.616) TCGA-66-2766-01 12 112082156 112082156 T A BRAP Silent p.T542T 0.78 TCGA-66-2766-01 12 121176366 121176366 G C ACADS Missense_Mutation p.A276P 0.74 deleterious(0) probably_damaging(1) TCGA-66-2766-01 12 123463026 123463026 G T OGFOD2 Silent p.A87A 0.81 TCGA-66-2766-01 12 18242192 18242192 T C RERGL Missense_Mutation p.Y9C 0.55 tolerated_low_confidence(0.09) benign(0.001) TCGA-66-2766-01 12 21668809 21668809 G A GOLT1B 3'UTR 0.44 TCGA-66-2766-01 12 21681971 21681971 C T C12orf39 Missense_Mutation p.P82L 0.55 tolerated(0.06) benign(0.029) TCGA-66-2766-01 12 23818453 23818453 C T SOX5 Missense_Mutation p.D286N 0.25 tolerated(0.18) possibly_damaging(0.856) TCGA-66-2766-01 12 33030864 33030864 G A PKP2 Missense_Mutation p.A317V 0.51 tolerated(0.94) benign(0) TCGA-66-2766-01 12 39947905 39947905 C A ABCD2 Missense_Mutation p.D678Y 0.54 deleterious(0) probably_damaging(0.945) TCGA-66-2766-01 12 51442112 51442112 C G LETMD1 5'Flank 0.65 TCGA-66-2766-01 12 52306925 52306925 C A ACVRL1 Missense_Mutation p.T35K 0.61 tolerated(0.27) benign(0.033) TCGA-66-2766-01 12 54756379 54756379 C T GPR84 3'UTR 0.22 TCGA-66-2766-01 12 56221176 56221176 G T DNAJC14 Missense_Mutation p.Q423K 0.18 deleterious(0.01) benign(0.028) TCGA-66-2766-01 12 58112822 58112822 G T OS9 Missense_Mutation p.R486L 0.21 deleterious(0) possibly_damaging(0.805) TCGA-66-2766-01 12 60169162 60169162 C T SLC16A7 Silent p.L362L 0.21 TCGA-66-2766-01 12 62148671 62148671 C A FAM19A2 Missense_Mutation p.A81S 0.37 deleterious(0.04) benign(0.155) TCGA-66-2766-01 12 72667238 72667238 C G TRHDE Missense_Mutation p.A227G 0.34 tolerated(0.2) benign(0.347) TCGA-66-2766-01 12 77191305 77191305 T C ZDHHC17 Missense_Mutation p.V62A 0.30 deleterious(0) benign(0.079) TCGA-66-2766-01 12 77239565 77239565 G T ZDHHC17 Missense_Mutation p.W469L 0.76 deleterious(0) benign(0.055) TCGA-66-2766-01 12 81545798 81545798 G A ACSS3 Missense_Mutation p.D341N 0.38 deleterious(0) probably_damaging(0.985) TCGA-66-2766-01 12 86199727 86199727 C A RASSF9 Missense_Mutation p.D21Y 0.76 deleterious(0) benign(0.336) TCGA-66-2766-01 12 86373487 86373487 A T MGAT4C Missense_Mutation p.D339E 0.72 deleterious(0.01) probably_damaging(0.953) TCGA-66-2766-01 12 91539808 91539808 T A DCN 3'UTR 0.82 TCGA-66-2766-01 12 99056574 99056574 A T APAF1 Missense_Mutation p.K315N 0.76 tolerated(0.19) benign(0.007) TCGA-66-2766-01 13 107145427 107145427 C A EFNB2 Missense_Mutation p.M321I 0.81 tolerated(0.2) possibly_damaging(0.517) TCGA-66-2766-01 13 111111202 111111202 G T COL4A2 Missense_Mutation p.G506V 0.19 probably_damaging(1) TCGA-66-2766-01 13 26956958 26956958 C T CDK8 Missense_Mutation p.A155V 0.67 deleterious(0) probably_damaging(0.959) TCGA-66-2766-01 13 28014513 28014513 C A MTIF3 Missense_Mutation p.G25C 0.80 deleterious(0.03) possibly_damaging(0.885) TCGA-66-2766-01 13 28588631 28588631 C A FLT3 Missense_Mutation p.L939F 0.87 deleterious(0) probably_damaging(0.998) TCGA-66-2766-01 13 32813925 32813925 G A FRY Silent p.T2198T 0.50 TCGA-66-2766-01 13 33349304 33349304 G A PDS5B 3'UTR 0.38 TCGA-66-2766-01 13 37679493 37679493 T G CSNK1A1L 5'UTR 0.18 TCGA-66-2766-01 13 38138674 38138675 - T POSTN Frame_Shift_Ins p.A819Sfs*9 0.45 TCGA-66-2766-01 13 38237841 38237841 G A TRPC4 Missense_Mutation p.S467L 0.93 tolerated(0.06) benign(0.062) TCGA-66-2766-01 13 39262581 39262581 A G FREM2 Missense_Mutation p.Q367R 0.82 tolerated(0.06) possibly_damaging(0.51) TCGA-66-2766-01 13 58206787 58206787 G T PCDH17 Missense_Mutation p.G36V 0.72 deleterious(0) probably_damaging(0.986) TCGA-66-2766-01 13 60348879 60348880 - T DIAPH3 Frame_Shift_Ins p.R1081Kfs*25 0.41 TCGA-66-2766-01 13 70281777 70281777 G A KLHL1 Nonsense_Mutation p.Q723* 0.74 TCGA-66-2766-01 13 78146272 78146272 C T SCEL Missense_Mutation p.P165S 0.44 deleterious(0) probably_damaging(1) TCGA-66-2766-01 14 107083436 107083436 G T IGHV4-59 Silent p.I56I 0.34 TCGA-66-2766-01 14 24788955 24788955 A G ADCY4 Missense_Mutation p.F909S 0.75 deleterious(0) probably_damaging(1) TCGA-66-2766-01 14 44976231 44976231 C A FSCB 5'UTR 0.74 TCGA-66-2766-01 14 45623899 45623899 G T FANCM Splice_Site p.X395_splice 0.62 TCGA-66-2766-01 14 47120507 47120507 C T RPL10L Missense_Mutation p.E145K 0.32 tolerated(1) benign(0) TCGA-66-2766-01 14 51239056 51239056 T G NIN Missense_Mutation p.Q315P 0.79 deleterious(0.03) possibly_damaging(0.786) TCGA-66-2766-01 14 52496265 52496265 C A NID2 Missense_Mutation p.D801Y 0.73 deleterious(0) probably_damaging(1) TCGA-66-2766-01 14 52496266 52496266 C A NID2 Silent p.V800V 0.73 TCGA-66-2766-01 14 58831249 58831249 G T ARID4A Missense_Mutation p.Q814H 0.74 tolerated_low_confidence(0.44) benign(0.001) TCGA-66-2766-01 14 80668906 80668906 C T DIO2 3'Flank 0.91 TCGA-66-2766-01 14 88652366 88652366 C T KCNK10 Missense_Mutation p.R382H 0.77 deleterious(0) probably_damaging(0.939) TCGA-66-2766-01 14 88654444 88654444 G C KCNK10 Missense_Mutation p.A293G 0.78 tolerated(0.12) benign(0.122) TCGA-66-2766-01 14 88658601 88658601 G C KCNK10 Missense_Mutation p.L279V 0.79 deleterious(0) possibly_damaging(0.883) TCGA-66-2766-01 14 92105570 92105570 C T CATSPERB Missense_Mutation p.G486E 0.73 deleterious(0.01) probably_damaging(0.985) TCGA-66-2766-01 15 29390704 29390704 G T APBA2 Silent p.G421G 0.65 TCGA-66-2766-01 15 41476288 41476288 T C EXD1 Silent p.T462T 0.70 TCGA-66-2766-01 15 41983842 41983842 C G MGA Intron 0.36 TCGA-66-2766-01 15 48548078 48548078 C A SLC12A1 Silent p.T671T 0.47 TCGA-66-2766-01 15 48633645 48633645 C T DUT Intron 0.71 TCGA-66-2766-01 15 63132812 63132812 G T TLN2 3'UTR 0.79 TCGA-66-2766-01 15 72192182 72192182 G T MYO9A Missense_Mutation p.Q1106K 0.78 tolerated(0.69) benign(0.001) TCGA-66-2766-01 15 72643620 72643620 G T HEXA Intron 0.28 TCGA-66-2766-01 15 77907685 77907685 G A LINGO1 Silent p.S188S 0.85 TCGA-66-2766-01 15 86124126 86124126 T C AKAP13 Missense_Mutation p.S943P 0.28 tolerated_low_confidence(0.21) possibly_damaging(0.876) TCGA-66-2766-01 16 20477012 20477012 T A ACSM2A Silent p.P117P 0.65 TCGA-66-2766-01 16 20998633 20998633 T C DNAH3 Missense_Mutation p.I2340M 0.72 tolerated(0.39) benign(0.003) TCGA-66-2766-01 16 29115412 29115412 G A CTB-134H23.3 RNA 0.73 TCGA-66-2766-01 16 30309765 30309765 T C RP11-347C12.2 RNA 0.78 TCGA-66-2766-01 16 52484312 52484312 C A TOX3 Missense_Mutation p.Q185H 0.22 deleterious(0.03) possibly_damaging(0.896) TCGA-66-2766-01 16 53515706 53515706 C A RBL2 Silent p.R1070R 0.54 TCGA-66-2766-01 16 53878072 53878072 G C FTO Missense_Mutation p.E253Q 0.25 tolerated(0.29) benign(0.366) TCGA-66-2766-01 16 56403212 56403212 G C AMFR Missense_Mutation p.Q470E 0.52 deleterious(0.03) possibly_damaging(0.688) TCGA-66-2766-01 16 56685848 56685848 G A MT1B 5'UTR 0.48 TCGA-66-2766-01 16 67472472 67472472 G A ATP6V0D1 Missense_Mutation p.R339C 0.30 deleterious(0.01) possibly_damaging(0.901) TCGA-66-2766-01 16 71674923 71674923 C G MARVELD3 Missense_Mutation p.T409S 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.742) TCGA-66-2766-01 16 89347559 89347559 C A ANKRD11 Missense_Mutation p.R1797S 0.25 probably_damaging(0.954) TCGA-66-2766-01 16 89806384 89806384 C A ZNF276 3'Flank 0.31 TCGA-66-2766-01 17 10346825 10346825 T C MYH4 Missense_Mutation p.N1896S 0.65 tolerated(0.18) possibly_damaging(0.454) TCGA-66-2766-01 17 10400625 10400625 G C MYH1 Missense_Mutation p.R1504G 0.69 deleterious(0) possibly_damaging(0.894) TCGA-66-2766-01 17 29131049 29131049 G C CRLF3 Silent p.L69L 0.55 TCGA-66-2766-01 17 30510218 30510218 C T RHOT1 Missense_Mutation p.S156L 0.55 deleterious(0) possibly_damaging(0.827) TCGA-66-2766-01 17 32961955 32961955 C A TMEM132E Missense_Mutation p.T519N 0.54 tolerated(0.57) benign(0.334) TCGA-66-2766-01 17 34185444 34185444 A G C17orf66 Missense_Mutation p.V342A 0.50 deleterious(0.04) benign(0.037) TCGA-66-2766-01 17 35931928 35931928 C A SYNRG Nonsense_Mutation p.E354* 0.55 TCGA-66-2766-01 17 36708245 36708245 C A SRCIN1 Silent p.P868P 0.24 TCGA-66-2766-01 17 37921999 37921999 G C IKZF3 3'UTR 0.52 TCGA-66-2766-01 17 39038830 39038830 C T KRT20 Missense_Mutation p.R156K 0.43 tolerated(0.16) benign(0.058) TCGA-66-2766-01 17 39768815 39768815 G T KRT16 Silent p.A42A 0.40 TCGA-66-2766-01 17 41004563 41004563 G T AOC3 Silent p.G401G 0.41 TCGA-66-2766-01 17 41577356 41577356 G C DHX8 Missense_Mutation p.M477I 0.22 tolerated(0.08) benign(0.028) TCGA-66-2766-01 17 41832873 41832873 C T SOST Missense_Mutation p.R160H 0.21 deleterious(0.02) probably_damaging(0.994) TCGA-66-2766-01 17 61492927 61492927 C A TANC2 Nonsense_Mutation p.Y1269* 0.49 TCGA-66-2766-01 17 67197667 67197667 T C ABCA10 Silent p.P383P 0.49 TCGA-66-2766-01 17 75212813 75212813 T G SEC14L1 3'UTR 0.24 TCGA-66-2766-01 17 7578271 7578271 T A TP53 Missense_Mutation p.H193L 0.77 deleterious(0) probably_damaging(1) TCGA-66-2766-01 17 76817074 76817074 C A USP36 Missense_Mutation p.R276L 0.52 deleterious(0) probably_damaging(0.983) TCGA-66-2766-01 17 7751547 7751547 C T KDM6B Silent p.G647G 0.27 TCGA-66-2766-01 17 78326514 78326514 G T RNF213 Intron 0.47 TCGA-66-2766-01 17 78326875 78326875 G A RNF213 Intron 0.22 TCGA-66-2766-01 17 8274697 8274697 A G KRBA2 Silent p.Y52Y 0.33 TCGA-66-2766-01 17 9729453 9729453 C - GLP2R Frame_Shift_Del p.M26Wfs*59 0.51 TCGA-66-2766-01 18 13049582 13049582 G C CEP192 Missense_Mutation p.R931T 0.76 tolerated(0.16) benign(0.037) TCGA-66-2766-01 18 13884819 13884819 G T MC2R Silent p.A233A 0.74 TCGA-66-2766-01 18 21501541 21501541 C T LAMA3 Silent p.I2723I 0.09 TCGA-66-2766-01 18 3255940 3255940 C T MYL12A 3'UTR 0.56 TCGA-66-2766-01 18 51888324 51888324 C T C18orf54 Intron 0.69 TCGA-66-2766-01 18 5394784 5394784 A C EPB41L3 Silent p.A1054A 0.66 TCGA-66-2766-01 18 66504591 66504591 G T CCDC102B Missense_Mutation p.E197D 0.70 tolerated(0.08) benign(0.045) TCGA-66-2766-01 18 66678241 66678241 C G CCDC102B Missense_Mutation p.T445S 0.75 tolerated(0.19) benign(0.121) TCGA-66-2766-01 19 11032100 11032100 G C CARM1 Missense_Mutation p.M555I 0.31 deleterious_low_confidence(0.03) benign(0.292) TCGA-66-2766-01 19 12089587 12089587 C T ZNF763 Missense_Mutation p.P286L 0.54 deleterious(0.03) probably_damaging(0.991) TCGA-66-2766-01 19 12126290 12126290 G C ZNF433 Missense_Mutation p.F464L 0.18 tolerated(0.31) benign(0.093) TCGA-66-2766-01 19 12384865 12384865 C T ZNF44 Missense_Mutation p.E117K 0.15 tolerated(0.11) possibly_damaging(0.725) TCGA-66-2766-01 19 14740935 14740935 G T EMR3 Silent p.A576A 0.51 TCGA-66-2766-01 19 15564029 15564029 C T RASAL3 Nonsense_Mutation p.W853* 0.23 TCGA-66-2766-01 19 16280444 16280444 C G CIB3 Silent p.L65L 0.26 TCGA-66-2766-01 19 17049240 17049240 C A CPAMD8 Missense_Mutation p.R984L 0.28 deleterious(0.02) probably_damaging(0.995) TCGA-66-2766-01 19 17728602 17728602 C T UNC13A Silent p.P1489P 0.19 TCGA-66-2766-01 19 18001770 18001770 C T SLC5A5 Missense_Mutation p.P576L 0.37 deleterious(0.04) benign(0.319) TCGA-66-2766-01 19 18943006 18943006 A T UPF1 5'UTR 0.47 TCGA-66-2766-01 19 19349166 19349166 C A NCAN Missense_Mutation p.R1119S 0.34 deleterious(0) possibly_damaging(0.823) TCGA-66-2766-01 19 2073212 2073212 G C MOB3A 3'UTR 0.45 TCGA-66-2766-01 19 20807233 20807233 C T ZNF626 Missense_Mutation p.E484K 0.12 tolerated(0.1) benign(0.026) TCGA-66-2766-01 19 20807401 20807401 C T ZNF626 Missense_Mutation p.E428K 0.15 tolerated(0.12) benign(0.405) TCGA-66-2766-01 19 20807684 20807684 T A ZNF626 Missense_Mutation p.R333S 0.16 tolerated(0.22) possibly_damaging(0.465) TCGA-66-2766-01 19 21131617 21131617 G A ZNF85 Silent p.V99V 0.14 TCGA-66-2766-01 19 22155510 22155510 G T ZNF208 Missense_Mutation p.P776T 0.46 deleterious(0.01) probably_damaging(0.98) TCGA-66-2766-01 19 30936483 30936483 C T ZNF536 Missense_Mutation p.R672C 0.24 tolerated(0.06) probably_damaging(0.997) TCGA-66-2766-01 19 33355641 33355641 G A SLC7A9 Silent p.I43I 0.10 TCGA-66-2766-01 19 33878385 33878385 G A PEPD Silent p.V449V 0.15 TCGA-66-2766-01 19 34895654 34895654 C G RP11-618P17.4 Missense_Mutation p.P99R 0.12 deleterious(0) probably_damaging(0.948) TCGA-66-2766-01 19 36230925 36230925 T C IGFLR1 Missense_Mutation p.Q136R 0.68 tolerated(0.29) benign(0.004) TCGA-66-2766-01 19 36339015 36339015 C A NPHS1 Silent p.R456R 0.19 TCGA-66-2766-01 19 36398483 36398483 C T TYROBP Splice_Site p.X32_splice 0.15 TCGA-66-2766-01 19 38851187 38851187 G A CATSPERG Nonsense_Mutation p.W556* 0.73 TCGA-66-2766-01 19 40947845 40947845 C T SERTAD3 Missense_Mutation p.R48Q 0.14 tolerated(0.37) probably_damaging(0.992) TCGA-66-2766-01 19 40993684 40993684 G T SPTBN4 Missense_Mutation p.D84Y 0.12 deleterious(0) probably_damaging(0.935) TCGA-66-2766-01 19 41125266 41125266 G A LTBP4 Missense_Mutation p.E1095K 0.22 deleterious(0.01) probably_damaging(0.99) TCGA-66-2766-01 19 52327118 52327118 C T FPR3 Silent p.F39F 0.77 TCGA-66-2766-01 19 53472996 53472996 G T ZNF702P RNA 0.77 TCGA-66-2766-01 19 55685915 55685915 G C SYT5 Missense_Mutation p.F310L 0.34 deleterious(0.02) probably_damaging(0.996) TCGA-66-2766-01 19 55815139 55815139 G A BRSK1 Missense_Mutation p.G411S 0.80 deleterious(0.02) possibly_damaging(0.855) TCGA-66-2766-01 19 58723696 58723696 G C ZNF274 Missense_Mutation p.L382F 0.83 tolerated(0.18) benign(0.014) TCGA-66-2766-01 19 6309832 6309832 G A ACER1 Missense_Mutation p.R122C 0.29 tolerated(0.28) benign(0.001) TCGA-66-2766-01 19 8322848 8322848 G A CERS4 Missense_Mutation p.R276Q 0.21 deleterious(0) probably_damaging(0.997) TCGA-66-2766-01 19 8994501 8994501 G A MUC16 Silent p.F13797F 0.13 TCGA-66-2766-01 19 9087854 9087854 G C MUC16 Missense_Mutation p.P1321A 0.34 unknown(0) TCGA-66-2766-01 1 103400066 103400066 C A COL11A1 Missense_Mutation p.G1180V 0.25 unknown(0) TCGA-66-2766-01 1 108145765 108145766 - T VAV3 Frame_Shift_Ins p.R679Kfs*10 0.32 TCGA-66-2766-01 1 109198244 109198244 C A HENMT1 Missense_Mutation p.G76V 0.21 deleterious(0) probably_damaging(0.997) TCGA-66-2766-01 1 114505001 114505001 A G HIPK1 Missense_Mutation p.I682V 0.27 tolerated(0.1) benign(0.132) TCGA-66-2766-01 1 114680233 114680233 A T SYT6 Missense_Mutation p.F234I 0.46 deleterious(0) probably_damaging(1) TCGA-66-2766-01 1 115438085 115438085 T C SYCP1 Silent p.L425L 0.33 TCGA-66-2766-01 1 145587438 145587438 C T NUDT17 Silent p.L214L 0.62 TCGA-66-2766-01 1 149783853 149783853 G A HIST2H2BF Missense_Mutation p.P9L 0.50 deleterious_low_confidence(0.02) unknown(0) TCGA-66-2766-01 1 149784964 149784964 C A HIST2H3D Missense_Mutation p.M91I 0.53 tolerated_low_confidence(0.42) benign(0) TCGA-66-2766-01 1 152595380 152595380 G C LCE3A Missense_Mutation p.S67C 0.48 tolerated_low_confidence(0.18) unknown(0) TCGA-66-2766-01 1 152648673 152648673 G T LCE2C Missense_Mutation p.G61V 0.26 tolerated_low_confidence(0.06) unknown(0) TCGA-66-2766-01 1 152784941 152784941 C A LCE1B Missense_Mutation p.Q7K 0.14 deleterious_low_confidence(0) unknown(0) TCGA-66-2766-01 1 152785258 152785258 G T LCE1B Missense_Mutation p.Q112H 0.53 deleterious_low_confidence(0) unknown(0) TCGA-66-2766-01 1 154841969 154841969 C T KCNN3 Missense_Mutation p.A158T 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.685) TCGA-66-2766-01 1 156376738 156376738 G A C1orf61 Intron 0.31 TCGA-66-2766-01 1 157740362 157740362 C T FCRL2 Missense_Mutation p.M49I 0.41 tolerated(0.44) benign(0.021) TCGA-66-2766-01 1 158687140 158687140 G T OR6K3 Missense_Mutation p.L256I 0.34 tolerated(0.11) possibly_damaging(0.58) TCGA-66-2766-01 1 160054134 160054134 A G KCNJ9 Missense_Mutation p.N105S 0.23 tolerated(0.3) benign(0.013) TCGA-66-2766-01 1 160061685 160061685 C A IGSF8 Silent p.V590V 0.51 TCGA-66-2766-01 1 161167800 161167800 T C ADAMTS4 Silent p.R206R 0.48 TCGA-66-2766-01 1 16264403 16264403 C G SPEN Missense_Mutation p.R3536G 0.42 possibly_damaging(0.605) TCGA-66-2766-01 1 167059522 167059522 C A GPA33 Translation_Start_Site p.M1? 0.49 deleterious_low_confidence(0) benign(0.307) TCGA-66-2766-01 1 176564468 176564468 C A PAPPA2 Silent p.T576T 0.24 TCGA-66-2766-01 1 176758968 176758968 T A PAPPA2 Missense_Mutation p.L1580Q 0.57 deleterious(0) probably_damaging(1) TCGA-66-2766-01 1 181767820 181767820 C A CACNA1E Missense_Mutation p.N2264K 0.50 deleterious(0.02) possibly_damaging(0.775) TCGA-66-2766-01 1 185240491 185240491 G C SWT1 Missense_Mutation p.E826D 0.20 tolerated(0.34) probably_damaging(0.997) TCGA-66-2766-01 1 190250787 190250787 G T BRINP3 Missense_Mutation p.N110K 0.44 deleterious(0.02) probably_damaging(0.998) TCGA-66-2766-01 1 1957004 1957004 G A GABRD Silent p.R99R 0.76 TCGA-66-2766-01 1 200959153 200959153 C A KIF21B Missense_Mutation p.D1017Y 0.25 deleterious(0) probably_damaging(0.998) TCGA-66-2766-01 1 201839746 201839746 G A IPO9 Silent p.V723V 0.33 TCGA-66-2766-01 1 201980363 201980363 C T ELF3 Silent p.A33A 0.53 TCGA-66-2766-01 1 217947719 217947719 C T SPATA17 Missense_Mutation p.P188L 0.50 deleterious(0) possibly_damaging(0.852) TCGA-66-2766-01 1 218504483 218504483 A G RRP15 3'UTR 0.45 TCGA-66-2766-01 1 220152953 220152953 C G EPRS Missense_Mutation p.G1239A 0.26 tolerated(1) benign(0) TCGA-66-2766-01 1 227947172 227947172 C G SNAP47 Nonsense_Mutation p.S370* 0.23 TCGA-66-2766-01 1 231079575 231079575 C G TTC13 Missense_Mutation p.E217Q 0.25 tolerated(0.12) possibly_damaging(0.638) TCGA-66-2766-01 1 237551473 237551473 G C RYR2 Missense_Mutation p.E255Q 0.27 possibly_damaging(0.824) TCGA-66-2766-01 1 241667398 241667398 G T FH Nonsense_Mutation p.S351* 0.36 TCGA-66-2766-01 1 247024468 247024468 G C AHCTF1 Missense_Mutation p.Q1298E 0.20 tolerated(0.89) benign(0.009) TCGA-66-2766-01 1 248813788 248813788 G T OR2T27 Missense_Mutation p.P133H 0.15 deleterious(0.03) probably_damaging(0.933) TCGA-66-2766-01 1 32677697 32677697 G A DCDC2B Missense_Mutation p.S141N 0.84 deleterious(0) probably_damaging(0.998) TCGA-66-2766-01 1 39340741 39340741 G C GJA9 Missense_Mutation p.Q344E 0.25 tolerated(0.18) benign(0.107) TCGA-66-2766-01 1 39341106 39341106 G A GJA9 Missense_Mutation p.S222L 0.24 deleterious(0) probably_damaging(0.998) TCGA-66-2766-01 1 43224593 43224593 T A LEPRE1 Silent p.P290P 0.57 TCGA-66-2766-01 1 45797904 45797904 C A MUTYH Silent p.V286V 0.43 TCGA-66-2766-01 1 55144477 55144477 G T MROH7 Missense_Mutation p.G667W 0.32 deleterious(0) probably_damaging(0.999) TCGA-66-2766-01 1 75097473 75097473 T C C1orf173 Missense_Mutation p.N248S 0.33 tolerated(0.26) benign(0.202) TCGA-66-2766-01 1 75185016 75185016 C A CRYZ Missense_Mutation p.G102V 0.39 deleterious(0.01) possibly_damaging(0.649) TCGA-66-2766-01 1 75684271 75684271 G A SLC44A5 Missense_Mutation p.A478V 0.38 tolerated(0.47) benign(0.403) TCGA-66-2766-01 1 75699737 75699737 G A SLC44A5 Silent p.L263L 0.31 TCGA-66-2766-01 1 82408659 82408659 T C LPHN2 Missense_Mutation p.V135A 0.32 deleterious(0.01) benign(0.273) TCGA-66-2766-01 1 94360225 94360225 C T GCLM Silent p.L200L 0.35 TCGA-66-2766-01 1 94645435 94645435 C G ARHGAP29 Missense_Mutation p.E776Q 0.28 deleterious(0.01) probably_damaging(0.938) TCGA-66-2766-01 20 20278961 20278961 G T C20orf26 Missense_Mutation p.G1118V 0.81 deleterious(0) probably_damaging(0.988) TCGA-66-2766-01 20 21142511 21142511 G C RP4-777D9.2 Intron 0.60 TCGA-66-2766-01 20 29965006 29965006 G A DEFB118 3'Flank 0.73 TCGA-66-2766-01 20 35769624 35769624 G T MROH8 Silent p.R504R 0.20 TCGA-66-2766-01 20 37357187 37357187 G A SLC32A1 Missense_Mutation p.A495T 0.18 tolerated(0.18) benign(0.23) TCGA-66-2766-01 20 391053 391053 C T RBCK1 Intron 0.15 TCGA-66-2766-01 20 48747598 48747598 C A TMEM189 Intron 0.42 TCGA-66-2766-01 20 57485913 57485913 C T GNAS 3'UTR 0.37 TCGA-66-2766-01 20 61957036 61957036 A T COL20A1 Missense_Mutation p.Q1122L 0.33 tolerated(0.06) possibly_damaging(0.756) TCGA-66-2766-01 20 62173649 62173649 G T SRMS Silent p.A271A 0.39 TCGA-66-2766-01 21 10906938 10906938 C T TPTE Missense_Mutation p.M541I 0.41 tolerated_low_confidence(0.28) benign(0) TCGA-66-2766-01 21 11038994 11038994 C G BAGE2 RNA 0.05 TCGA-66-2766-01 21 47855969 47855969 C G PCNT Silent p.L2968L 0.35 TCGA-66-2766-01 22 17586799 17586799 G A IL17RA Missense_Mutation p.G334S 0.50 tolerated(0.05) benign(0.266) TCGA-66-2766-01 22 22892332 22892332 C T PRAME Missense_Mutation p.G257S 0.22 deleterious(0.04) benign(0.426) TCGA-66-2766-01 22 23922244 23922244 G A IGLL1 Missense_Mutation p.S45L 0.88 tolerated_low_confidence(0.17) benign(0) TCGA-66-2766-01 22 24034261 24034261 G T RGL4 Missense_Mutation p.S15I 0.24 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-66-2766-01 22 24143214 24143214 C A SMARCB1 Missense_Mutation p.T149K 0.17 deleterious(0.01) possibly_damaging(0.81) TCGA-66-2766-01 22 29886193 29886195 AGA - NEFH In_Frame_Del p.K857del 0.22 TCGA-66-2766-01 22 30950848 30950848 G A GAL3ST1 3'UTR 0.23 TCGA-66-2766-01 22 37535167 37535167 G - IL2RB Frame_Shift_Del p.F127Lfs*6 0.37 TCGA-66-2766-01 22 39770383 39770383 G T SYNGR1 Missense_Mutation p.E54D 0.22 tolerated(0.21) benign(0.042) TCGA-66-2766-01 22 39770384 39770384 G T SYNGR1 Missense_Mutation p.G55W 0.22 deleterious(0.02) possibly_damaging(0.762) TCGA-66-2766-01 22 45312219 45312219 C T PHF21B Missense_Mutation p.V169M 0.36 deleterious_low_confidence(0.02) benign(0.133) TCGA-66-2766-01 2 100623800 100623800 C A AFF3 Silent p.G124G 0.41 TCGA-66-2766-01 2 105859164 105859164 C A GPR45 Missense_Mutation p.H283Q 0.44 tolerated(0.06) probably_damaging(0.926) TCGA-66-2766-01 2 109347290 109347290 T C RANBP2 Silent p.G67G 0.18 TCGA-66-2766-01 2 122135144 122135144 C - CLASP1 Frame_Shift_Del p.K1191Nfs*10 0.37 TCGA-66-2766-01 2 131521188 131521188 G A AMER3 Missense_Mutation p.G515S 0.38 tolerated(0.2) benign(0.035) TCGA-66-2766-01 2 131801050 131801050 C G ARHGEF4 Nonsense_Mutation p.S498* 0.22 TCGA-66-2766-01 2 136537796 136537796 A C UBXN4 Missense_Mutation p.D410A 0.55 deleterious(0.02) benign(0.015) TCGA-66-2766-01 2 137852569 137852569 A G THSD7B Silent p.P359P 0.63 TCGA-66-2766-01 2 141264380 141264380 C T LRP1B Missense_Mutation p.E2836K 0.29 possibly_damaging(0.621) TCGA-66-2766-01 2 141625764 141625764 C G LRP1B Missense_Mutation p.G1413A 0.50 benign(0.011) TCGA-66-2766-01 2 143676175 143676175 C T KYNU Intron 0.62 TCGA-66-2766-01 2 160206824 160206824 C T BAZ2B Missense_Mutation p.E1420K 0.16 benign(0.023) TCGA-66-2766-01 2 160605213 160605213 G A MARCH7 Missense_Mutation p.R471K 0.29 deleterious(0.02) benign(0.284) TCGA-66-2766-01 2 166847808 166847808 T C SCN1A Missense_Mutation p.I1993V 0.37 tolerated_low_confidence(0.29) benign(0) TCGA-66-2766-01 2 166915146 166915146 G A SCN1A Missense_Mutation p.S106F 0.39 deleterious(0.04) benign(0.429) TCGA-66-2766-01 2 168726259 168726259 C T B3GALT1 Missense_Mutation p.S237L 0.17 deleterious(0) probably_damaging(0.97) TCGA-66-2766-01 2 170070280 170070280 G T LRP2 Missense_Mutation p.T1976N 0.42 benign(0.236) TCGA-66-2766-01 2 178098953 178098953 C G NFE2L2 Missense_Mutation p.G31A 0.53 deleterious(0.02) benign(0.318) TCGA-66-2766-01 2 179438157 179438157 A T TTN Silent p.I24234I 0.45 TCGA-66-2766-01 2 17952508 17952508 G T GEN1 Silent p.L252L 0.59 TCGA-66-2766-01 2 179574553 179574553 C G TTN Missense_Mutation p.R9498T 0.22 TCGA-66-2766-01 2 179590299 179590299 C G TTN Missense_Mutation p.E6878Q 0.44 TCGA-66-2766-01 2 181846838 181846838 C A UBE2E3 Missense_Mutation p.D23E 0.37 tolerated_low_confidence(0.35) benign(0.417) TCGA-66-2766-01 2 181927582 181927582 A T UBE2E3 Silent p.I197I 0.37 TCGA-66-2766-01 2 183822189 183822189 T C NCKAP1 Missense_Mutation p.T679A 0.43 deleterious(0) possibly_damaging(0.646) TCGA-66-2766-01 2 186697939 186697939 C A FSIP2 Missense_Mutation p.Q6993K 0.40 benign(0.002) TCGA-66-2766-01 2 201726069 201726069 T G CLK1 Missense_Mutation p.E136D 0.45 tolerated(0.43) benign(0.005) TCGA-66-2766-01 2 209168915 209168915 G A PIKFYVE Silent p.T447T 0.25 TCGA-66-2766-01 2 214204974 214204974 A G SPAG16 Silent p.K208K 0.73 TCGA-66-2766-01 2 224866640 224866640 C A SERPINE2 Splice_Site p.X5_splice 0.73 TCGA-66-2766-01 2 228884227 228884227 G T SPHKAP Missense_Mutation p.P448H 0.59 deleterious(0) probably_damaging(0.994) TCGA-66-2766-01 2 232573334 232573334 G T PTMA 5'UTR 0.76 TCGA-66-2766-01 2 3749950 3749950 C A ALLC Intron 0.17 TCGA-66-2766-01 2 40655902 40655902 C A SLC8A1 Missense_Mutation p.D507Y 0.58 deleterious(0.02) benign(0.001) TCGA-66-2766-01 2 43452889 43452889 T A ZFP36L2 Silent p.T18T 0.59 TCGA-66-2766-01 2 54164584 54164584 A G PSME4 Silent p.Y213Y 0.57 TCGA-66-2766-01 2 56420271 56420271 G T CCDC85A Silent p.G312G 0.11 TCGA-66-2766-01 2 61415167 61415167 A C AHSA2 3'UTR 0.06 TCGA-66-2766-01 2 61439041 61439041 C A USP34 Silent p.L2902L 0.10 TCGA-66-2766-01 2 73487572 73487572 C T FBXO41 Silent p.E798E 0.30 TCGA-66-2766-01 2 76975851 76975851 C T LRRTM4 Silent p.P581P 0.45 TCGA-66-2766-01 2 79349207 79349207 A C REG1A Missense_Mutation p.T93P 0.23 deleterious(0.05) probably_damaging(0.966) TCGA-66-2766-01 2 89278031 89278031 C A IGKV3-7 Nonsense_Mutation p.E102* 0.27 TCGA-66-2766-01 2 89309597 89309597 C A IGKV1-9 Missense_Mutation p.S78I 0.57 deleterious_low_confidence(0.01) benign(0.222) TCGA-66-2766-01 3 100029275 100029275 G C TBC1D23 Missense_Mutation p.R481T 0.18 tolerated(0.24) benign(0.03) TCGA-66-2766-01 3 10442733 10442733 T A ATP2B2 Missense_Mutation p.I229F 0.47 tolerated(0.19) probably_damaging(0.998) TCGA-66-2766-01 3 113955287 113955287 G A ZNF80 Missense_Mutation p.T212I 0.83 deleterious(0) possibly_damaging(0.697) TCGA-66-2766-01 3 115395334 115395334 G T GAP43 Missense_Mutation p.D205Y 0.79 deleterious(0) probably_damaging(0.999) TCGA-66-2766-01 3 118623603 118623603 G T IGSF11 Missense_Mutation p.T249N 0.79 deleterious(0.01) possibly_damaging(0.448) TCGA-66-2766-01 3 121190857 121190857 G A POLQ Missense_Mutation p.S2233L 0.43 deleterious(0) probably_damaging(0.996) TCGA-66-2766-01 3 121217337 121217337 C A POLQ Missense_Mutation p.A714S 0.75 tolerated(0.06) probably_damaging(0.999) TCGA-66-2766-01 3 121217338 121217338 C T POLQ Missense_Mutation p.M713I 0.75 deleterious(0.02) possibly_damaging(0.667) TCGA-66-2766-01 3 122284753 122284753 G A DTX3L Missense_Mutation p.E79K 0.62 tolerated(0.57) benign(0.002) TCGA-66-2766-01 3 127379755 127379755 G T PODXL2 Missense_Mutation p.G295V 0.81 tolerated(0.15) benign(0.01) TCGA-66-2766-01 3 130394252 130394252 G A COL6A6 3'UTR 0.33 TCGA-66-2766-01 3 147113820 147113820 G T ZIC4 Silent p.A219A 0.50 TCGA-66-2766-01 3 147128490 147128490 C G ZIC1 Nonsense_Mutation p.Y197* 0.14 TCGA-66-2766-01 3 149089452 149089452 A T TM4SF1 Intron 0.25 TCGA-66-2766-01 3 151046740 151046740 C G P2RY13 Missense_Mutation p.R35P 0.11 tolerated(0.41) benign(0.004) TCGA-66-2766-01 3 151161095 151161095 A G IGSF10 Silent p.D1880D 0.13 TCGA-66-2766-01 3 157296206 157296206 C T C3orf55 Intron 0.14 TCGA-66-2766-01 3 170185158 170185158 G - SLC7A14 Frame_Shift_Del p.I668Ffs*93 0.15 TCGA-66-2766-01 3 17051265 17051265 A G PLCL2 Missense_Mutation p.M17V 0.43 deleterious(0) probably_damaging(0.952) TCGA-66-2766-01 3 173322259 173322259 C T NLGN1 5'UTR 0.20 TCGA-66-2766-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.23 deleterious(0.02) probably_damaging(0.959) TCGA-66-2766-01 3 183823570 183823570 G A HTR3E Silent p.R272R 0.40 TCGA-66-2766-01 3 188584086 188584086 G C LPP Silent p.V503V 0.14 TCGA-66-2766-01 3 190122607 190122607 G T CLDN16 Nonsense_Mutation p.G162* 0.38 TCGA-66-2766-01 3 193335603 193335603 C T OPA1 Intron 0.09 TCGA-66-2766-01 3 196921445 196921445 C T DLG1 Missense_Mutation p.D112N 0.43 deleterious_low_confidence(0.03) benign(0.301) TCGA-66-2766-01 3 36587757 36587757 C A STAC Silent p.P395P 0.61 TCGA-66-2766-01 3 37388761 37388761 G C GOLGA4 Missense_Mutation p.E2199Q 0.03 probably_damaging(0.959) TCGA-66-2766-01 3 38647446 38647446 T G SCN5A Missense_Mutation p.H445P 0.81 deleterious(0) possibly_damaging(0.579) TCGA-66-2766-01 3 38739751 38739751 G C SCN10A Missense_Mutation p.L1654V 0.71 deleterious(0.02) probably_damaging(0.999) TCGA-66-2766-01 3 44496716 44496716 C G ZNF445 Missense_Mutation p.G109A 0.72 tolerated(0.21) probably_damaging(0.939) TCGA-66-2766-01 3 45709797 45709797 C T LIMD1 Silent p.F530F 0.76 TCGA-66-2766-01 3 5243501 5243501 C T EDEM1 Silent p.D250D 0.44 TCGA-66-2766-01 3 9426489 9426489 C T THUMPD3 3'UTR 0.16 TCGA-66-2766-01 3 96706267 96706267 C T EPHA6 Missense_Mutation p.R182C 0.74 deleterious(0) probably_damaging(0.927) TCGA-66-2766-01 3 97661451 97661451 T A MINA 3'UTR 0.91 TCGA-66-2766-01 4 119459045 119459045 G A CEP170P1 RNA 0.50 TCGA-66-2766-01 4 121957411 121957411 G C NDNF 3'UTR 0.69 TCGA-66-2766-01 4 175565062 175565062 G C GLRA3 Missense_Mutation p.R424G 0.78 deleterious(0.01) possibly_damaging(0.532) TCGA-66-2766-01 4 177138037 177138037 T A ASB5 Missense_Mutation p.E265V 0.75 deleterious(0) benign(0.058) TCGA-66-2766-01 4 185578371 185578371 C T PRIMPOL Missense_Mutation p.S26L 0.75 benign(0.01) TCGA-66-2766-01 4 185940020 185940020 G T HELT 5'Flank 0.40 TCGA-66-2766-01 4 187074888 187074888 C A FAM149A Missense_Mutation p.P59Q 0.68 tolerated(0.32) benign(0.37) TCGA-66-2766-01 4 20706339 20706339 C T PACRGL Nonsense_Mutation p.Q37* 0.34 TCGA-66-2766-01 4 2073723 2073723 G A POLN 3'UTR 0.78 TCGA-66-2766-01 4 23816007 23816007 C A PPARGC1A Nonsense_Mutation p.G367* 0.79 TCGA-66-2766-01 4 37592264 37592264 G A C4orf19 Missense_Mutation p.G196E 0.28 tolerated(1) benign(0.018) TCGA-66-2766-01 4 38117547 38117547 A T TBC1D1 Missense_Mutation p.Q925L 0.27 deleterious(0) possibly_damaging(0.866) TCGA-66-2766-01 4 38828694 38828694 C T TLR6 3'UTR 0.45 TCGA-66-2766-01 4 38907442 38907442 G T FAM114A1 Missense_Mutation p.R206L 0.49 tolerated(1) probably_damaging(0.95) TCGA-66-2766-01 4 39409024 39409024 C T KLB Missense_Mutation p.S152L 0.22 deleterious(0) probably_damaging(1) TCGA-66-2766-01 4 42088152 42088152 G A SLC30A9 3'UTR 0.21 TCGA-66-2766-01 4 47538480 47538480 G A ATP10D Missense_Mutation p.E348K 0.26 tolerated(0.25) benign(0.008) TCGA-66-2766-01 4 55131414 55131414 C A PDGFRA Intron 0.33 TCGA-66-2766-01 4 71346520 71346520 G T MUC7 Missense_Mutation p.S20I 0.29 deleterious(0) probably_damaging(0.955) TCGA-66-2766-01 4 71895091 71895091 T G DCK Missense_Mutation p.L260W 0.23 deleterious(0) probably_damaging(0.951) TCGA-66-2766-01 4 82096031 82096031 C A PRKG2 Nonsense_Mutation p.E182* 0.27 TCGA-66-2766-01 4 8582963 8582963 T A GPR78 Missense_Mutation p.L85Q 0.75 deleterious(0.01) probably_damaging(0.996) TCGA-66-2766-01 4 91389426 91389426 G C CCSER1 Missense_Mutation p.A549P 0.28 tolerated(0.15) probably_damaging(0.991) TCGA-66-2766-01 5 123983395 123983395 G A ZNF608 Silent p.P894P 0.71 TCGA-66-2766-01 5 139231387 139231387 C A NRG2 Missense_Mutation p.R525L 0.86 deleterious(0.02) possibly_damaging(0.737) TCGA-66-2766-01 5 140516585 140516585 G A PCDHB5 Silent p.L523L 0.72 TCGA-66-2766-01 5 140530216 140530216 T A PCDHB6 Missense_Mutation p.N126K 0.22 deleterious(0) probably_damaging(0.923) TCGA-66-2766-01 5 140811280 140811280 A T PCDHGA12 Missense_Mutation p.E318D 0.75 tolerated_low_confidence(0.28) benign(0.254) TCGA-66-2766-01 5 149226892 149226892 G C PPARGC1B Intron 0.77 TCGA-66-2766-01 5 153726779 153726779 G A GALNT10 Intron 0.31 TCGA-66-2766-01 5 171336 171336 A G PLEKHG4B Missense_Mutation p.Q920R 0.30 deleterious(0) probably_damaging(1) TCGA-66-2766-01 5 31267568 31267568 C T CDH6 5'UTR 0.47 TCGA-66-2766-01 5 31267569 31267569 G T CDH6 5'UTR 0.47 TCGA-66-2766-01 5 34941281 34941281 G C DNAJC21 Missense_Mutation p.E326Q 0.34 deleterious(0.03) benign(0.217) TCGA-66-2766-01 5 41010115 41010115 G A MROH2B Nonsense_Mutation p.Q1068* 0.11 TCGA-66-2766-01 5 41061737 41061737 C T MROH2B Missense_Mutation p.D184N 0.59 tolerated(0.47) benign(0.241) TCGA-66-2766-01 5 64468801 64468801 C T ADAMTS6 Missense_Mutation p.R982Q 0.68 deleterious(0.01) probably_damaging(0.997) TCGA-66-2766-01 5 78423587 78423587 C T BHMT Missense_Mutation p.P273L 0.77 deleterious(0) probably_damaging(0.999) TCGA-66-2766-01 5 7867395 7867395 C T FASTKD3 Missense_Mutation p.E268K 0.12 tolerated(0.56) benign(0.206) TCGA-66-2766-01 5 80381625 80381625 C A RASGRF2 Missense_Mutation p.P389H 0.68 deleterious(0) probably_damaging(0.997) TCGA-66-2766-01 6 100390984 100390984 C T MCHR2 Missense_Mutation p.R143H 0.47 tolerated(0.21) benign(0.005) TCGA-66-2766-01 6 110301089 110301089 G A GPR6 Silent p.Q258Q 0.25 TCGA-66-2766-01 6 127608136 127608136 A G RNF146 Silent p.E126E 0.23 TCGA-66-2766-01 6 129612773 129612773 G T LAMA2 Missense_Mutation p.A922S 0.22 tolerated(0.7) benign(0.008) TCGA-66-2766-01 6 134210464 134210464 T A TCF21 5'UTR 0.56 TCGA-66-2766-01 6 136600997 136600997 C T BCLAF1 Missense_Mutation p.R3H 0.43 deleterious_low_confidence(0) unknown(0) TCGA-66-2766-01 6 152540135 152540135 T A SYNE1 Intron 0.30 TCGA-66-2766-01 6 161132158 161132158 G T PLG Silent p.T114T 0.50 TCGA-66-2766-01 6 170105257 170105257 A G PHF10 Silent p.F461F 0.20 TCGA-66-2766-01 6 20548873 20548873 C T CDKAL1 Missense_Mutation p.H75Y 0.19 deleterious(0) probably_damaging(1) TCGA-66-2766-01 6 20758859 20758859 G A CDKAL1 Missense_Mutation p.E168K 0.39 deleterious(0.01) possibly_damaging(0.601) TCGA-66-2766-01 6 25771236 25771236 C A SLC17A4 Silent p.I234I 0.38 TCGA-66-2766-01 6 26205150 26205150 G C HIST1H4E Missense_Mutation p.R93T 0.45 deleterious(0) probably_damaging(0.992) TCGA-66-2766-01 6 28543072 28543072 C T SCAND3 Silent p.Q470Q 0.44 TCGA-66-2766-01 6 31112995 31112995 C T CCHCR1 Silent p.L608L 0.48 TCGA-66-2766-01 6 43403605 43403605 C G ABCC10 Silent p.L575L 0.30 TCGA-66-2766-01 6 43403612 43403612 C T ABCC10 Missense_Mutation p.P578S 0.29 tolerated(0.35) possibly_damaging(0.886) TCGA-66-2766-01 6 43538265 43538265 C T XPO5 Missense_Mutation p.E199K 0.41 tolerated(0.89) benign(0.102) TCGA-66-2766-01 6 46657768 46657768 G C TDRD6 Missense_Mutation p.D635H 0.19 tolerated(0.05) probably_damaging(0.91) TCGA-66-2766-01 6 47847084 47847084 G A PTCHD4 Missense_Mutation p.S499L 0.21 deleterious(0) probably_damaging(0.979) TCGA-66-2766-01 6 49696327 49696327 G A CRISP3 3'UTR 0.49 TCGA-66-2766-01 6 51890805 51890805 G T PKHD1 Missense_Mutation p.A1268D 0.49 tolerated(0.41) benign(0.21) TCGA-66-2766-01 6 5613522 5613522 G T FARS2 Missense_Mutation p.V396F 0.43 deleterious(0) probably_damaging(0.999) TCGA-66-2766-01 6 66205397 66205397 A C EYS 5'UTR 0.41 TCGA-66-2766-01 6 6654803 6654803 G A LY86 Silent p.L144L 0.30 TCGA-66-2766-01 6 7231394 7231394 C T RREB1 Missense_Mutation p.S1021L 0.27 tolerated(0.21) possibly_damaging(0.624) TCGA-66-2766-01 6 72960793 72960793 G T RIMS1 Nonsense_Mutation p.E848* 0.45 TCGA-66-2766-01 6 73904271 73904271 C A KCNQ5 Missense_Mutation p.Q664K 0.32 tolerated(1) benign(0.403) TCGA-66-2766-01 6 75893640 75893640 G A COL12A1 Silent p.A406A 0.25 TCGA-66-2766-01 6 90442303 90442303 G C MDN1 Missense_Mutation p.L1639V 0.26 probably_damaging(0.991) TCGA-66-2766-01 6 97063796 97063796 A G FHL5 3'UTR 0.36 TCGA-66-2766-01 7 101918593 101918593 G C CUX1 Missense_Mutation p.R507T 0.33 deleterious(0) probably_damaging(1) TCGA-66-2766-01 7 11416260 11416260 T C THSD7A Missense_Mutation p.Y1609C 0.38 deleterious(0) benign(0.028) TCGA-66-2766-01 7 126173012 126173012 T A GRM8 Silent p.A808A 0.36 TCGA-66-2766-01 7 126173262 126173262 T C GRM8 Missense_Mutation p.Y725C 0.41 deleterious(0) probably_damaging(0.983) TCGA-66-2766-01 7 12692275 12692275 A T SCIN Nonsense_Mutation p.K695* 0.38 TCGA-66-2766-01 7 128446913 128446913 G T CCDC136 Splice_Site p.X473_splice 0.31 TCGA-66-2766-01 7 129939246 129939246 T C CPA4 Splice_Site p.X95_splice 0.40 TCGA-66-2766-01 7 139299139 139299139 G A HIPK2 Missense_Mutation p.A628V 0.46 tolerated(0.09) benign(0.065) TCGA-66-2766-01 7 140035283 140035283 T C SLC37A3 Missense_Mutation p.I472V 0.35 tolerated(0.09) benign(0.156) TCGA-66-2766-01 7 142148961 142148961 C A TRBV5-5 Missense_Mutation p.D104Y 0.23 deleterious(0.01) possibly_damaging(0.817) TCGA-66-2766-01 7 142148962 142148962 C A TRBV5-5 Silent p.G103G 0.24 TCGA-66-2766-01 7 142605794 142605794 C T TRPV5 Silent p.A692A 0.40 TCGA-66-2766-01 7 143632691 143632691 C A OR2F2 Silent p.R122R 0.40 TCGA-66-2766-01 7 143632692 143632692 C T OR2F2 Missense_Mutation p.H123Y 0.41 tolerated(1) benign(0) TCGA-66-2766-01 7 144150401 144150401 C A TPK1 3'UTR 0.37 TCGA-66-2766-01 7 149130003 149130003 C T ZNF777 Missense_Mutation p.E454K 0.38 tolerated(0.08) probably_damaging(0.991) TCGA-66-2766-01 7 150553564 150553564 G T AOC1 Silent p.P2P 0.36 TCGA-66-2766-01 7 156476858 156476858 C A LMBR1 Splice_Site p.X463_splice 0.44 TCGA-66-2766-01 7 21847576 21847576 C T DNAH11 Missense_Mutation p.T3421M 0.42 benign(0.379) TCGA-66-2766-01 7 23224737 23224737 T G NUPL2 Missense_Mutation p.V57G 0.35 deleterious(0) probably_damaging(0.984) TCGA-66-2766-01 7 24749940 24749940 C A DFNA5 Silent p.L255L 0.42 TCGA-66-2766-01 7 30931705 30931705 G T FAM188B 3'UTR 0.44 TCGA-66-2766-01 7 36450708 36450708 A G ANLN Missense_Mutation p.D443G 0.32 deleterious(0) probably_damaging(0.989) TCGA-66-2766-01 7 41729530 41729530 G A INHBA Silent p.I333I 0.35 TCGA-66-2766-01 7 43917524 43917524 T A URGCP Missense_Mutation p.Q513L 0.37 deleterious(0) benign(0.302) TCGA-66-2766-01 7 50514445 50514445 G T FIGNL1 Missense_Mutation p.R181S 0.31 tolerated(0.95) benign(0) TCGA-66-2766-01 7 63709445 63709445 C G ZNF679 5'UTR 0.40 TCGA-66-2766-01 7 88965897 88965897 C T ZNF804B Missense_Mutation p.H1201Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-66-2766-01 7 88966053 88966053 C G ZNF804B Missense_Mutation p.P1253A 0.20 deleterious(0.01) possibly_damaging(0.804) TCGA-66-2766-01 7 89976052 89976052 A G GTPBP10 5'UTR 0.33 TCGA-66-2766-01 7 93536070 93536070 C T GNGT1 Silent p.I4I 0.20 TCGA-66-2766-01 7 99774750 99774750 C A GPC2 Nonsense_Mutation p.E25* 0.14 TCGA-66-2766-01 7 99971996 99971996 C T PILRA Missense_Mutation p.R132W 0.03 deleterious(0.02) possibly_damaging(0.663) TCGA-66-2766-01 8 109796805 109796805 C T TMEM74 Missense_Mutation p.D175N 0.05 deleterious(0) probably_damaging(0.999) TCGA-66-2766-01 8 110476533 110476533 G C PKHD1L1 Missense_Mutation p.R2491T 0.67 deleterious(0) possibly_damaging(0.77) TCGA-66-2766-01 8 121228694 121228694 G A COL14A1 Missense_Mutation p.V568I 0.20 tolerated(0.15) benign(0.011) TCGA-66-2766-01 8 135669838 135669838 T A ZFAT Silent p.T54T 0.63 TCGA-66-2766-01 8 139164883 139164883 A T FAM135B Missense_Mutation p.L612H 0.64 deleterious(0.01) possibly_damaging(0.789) TCGA-66-2766-01 8 143961094 143961094 C T CYP11B1 Missense_Mutation p.G46S 0.64 tolerated(0.65) benign(0.344) TCGA-66-2766-01 8 16026196 16026196 T A MSR1 Missense_Mutation p.N134I 0.74 deleterious(0) probably_damaging(0.932) TCGA-66-2766-01 8 18729986 18729986 G C PSD3 Missense_Mutation p.P130A 0.69 deleterious_low_confidence(0.01) possibly_damaging(0.459) TCGA-66-2766-01 8 30704887 30704887 C T TEX15 Silent p.V549V 0.75 TCGA-66-2766-01 8 3256999 3256999 T C CSMD1 Silent p.G773G 0.20 TCGA-66-2766-01 8 35406884 35406884 C A UNC5D Missense_Mutation p.P60T 0.69 deleterious(0) probably_damaging(0.999) TCGA-66-2766-01 8 48869797 48869797 T C PRKDC Silent p.L86L 0.80 TCGA-66-2766-01 8 51363290 51363290 G T SNTG1 Splice_Site p.X121_splice 0.71 TCGA-66-2766-01 8 6782451 6782451 T C DEFA6 Splice_Site p.X65_splice 0.75 TCGA-66-2766-01 8 71069449 71069449 G A NCOA2 Missense_Mutation p.P384L 0.72 deleterious(0.01) benign(0.003) TCGA-66-2766-01 8 88885511 88885511 T C DCAF4L2 Missense_Mutation p.Q230R 0.68 deleterious(0) benign(0.365) TCGA-66-2766-01 9 104192152 104192152 A G ALDOB Missense_Mutation p.I70T 0.23 deleterious(0) possibly_damaging(0.826) TCGA-66-2766-01 9 108397528 108397528 G A FKTN Missense_Mutation p.V457I 0.78 deleterious(0.01) possibly_damaging(0.888) TCGA-66-2766-01 9 115421967 115421967 A G KIAA1958 Missense_Mutation p.Q590R 0.19 tolerated(0.16) benign(0.029) TCGA-66-2766-01 9 125673735 125673735 G C ZBTB6 Missense_Mutation p.S206C 0.50 deleterious(0.01) probably_damaging(0.996) TCGA-66-2766-01 9 135786739 135786739 G A TSC1 Intron 0.30 TCGA-66-2766-01 9 136234304 136234304 C T SURF4 Silent p.K22K 0.20 TCGA-66-2766-01 9 136338552 136338552 T C SLC2A6 Missense_Mutation p.M403V 0.55 tolerated(0.59) benign(0.062) TCGA-66-2766-01 9 136501657 136501657 C A DBH Missense_Mutation p.P55Q 0.81 deleterious(0.03) probably_damaging(0.99) TCGA-66-2766-01 9 136573495 136573495 C G SARDH Missense_Mutation p.E462Q 0.57 deleterious(0) probably_damaging(0.998) TCGA-66-2766-01 9 137657551 137657551 A C COL5A1 Missense_Mutation p.K687Q 0.06 probably_damaging(0.966) TCGA-66-2766-01 9 17789429 17789429 G A SH3GL2 Missense_Mutation p.D169N 0.63 deleterious(0) probably_damaging(0.998) TCGA-66-2766-01 9 19786693 19786693 C A SLC24A2 Missense_Mutation p.A58S 0.70 tolerated_low_confidence(0.07) possibly_damaging(0.574) TCGA-66-2766-01 9 35699040 35699040 C G TLN1 Missense_Mutation p.A2330P 0.37 tolerated(0.3) benign(0.226) TCGA-66-2766-01 9 36223384 36223384 C T GNE Missense_Mutation p.R497K 0.69 deleterious_low_confidence(0.02) possibly_damaging(0.881) TCGA-66-2766-01 9 79325074 79325074 T G PRUNE2 Missense_Mutation p.K706Q 0.34 deleterious(0.02) benign(0.11) TCGA-66-2766-01 X 103267276 103267276 C A H2BFWT 3'UTR 0.62 TCGA-66-2766-01 X 120009089 120009089 G A CT47B1 Missense_Mutation p.R146C 0.85 deleterious(0.04) probably_damaging(0.996) TCGA-66-2766-01 X 122528859 122528859 G A GRIA3 Missense_Mutation p.G264E 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-66-2766-01 X 123514791 123514791 A G TENM1 Silent p.T2598T 0.82 TCGA-66-2766-01 X 129629113 129629114 GC - RP1-274L7.1 RNA 0.77 TCGA-66-2766-01 X 140271147 140271147 G T LDOC1 Missense_Mutation p.S20R 0.88 tolerated(0.57) benign(0.102) TCGA-66-2766-01 X 140271148 140271148 C T LDOC1 Missense_Mutation p.S20N 0.88 tolerated(0.38) benign(0.047) TCGA-66-2766-01 X 151935000 151935000 G C MAGEA3 3'UTR 0.77 TCGA-66-2766-01 X 37967889 37967889 G A SYTL5 Silent p.R479R 0.92 TCGA-66-2766-01 X 46913584 46913584 G T JADE3 Missense_Mutation p.A333S 0.36 deleterious(0.05) probably_damaging(0.963) TCGA-66-2766-01 X 47486233 47486233 G T CFP Silent p.G293G 0.87 TCGA-66-2766-01 X 49955644 49955644 C A AKAP4 Missense_Mutation p.A842S 0.77 tolerated(0.26) possibly_damaging(0.755) TCGA-66-2766-01 X 91132088 91132088 G T PCDH11X Missense_Mutation p.K283N 0.72 deleterious(0.01) benign(0.191) TCGA-66-2767-01 10 102289241 102289241 C A NDUFB8 Missense_Mutation p.M36I 0.14 tolerated(0.35) benign(0.098) TCGA-66-2767-01 10 104161252 104161252 C T NFKB2 Missense_Mutation p.P757L 0.13 tolerated(0.3) benign(0.093) TCGA-66-2767-01 10 104622727 104622727 G C C10orf32 3'UTR 0.22 TCGA-66-2767-01 10 118202640 118202640 T - PNLIPRP3 Frame_Shift_Del p.I93Kfs*24 0.16 TCGA-66-2767-01 10 119013575 119013575 C A SLC18A2 Missense_Mutation p.S180R 0.09 tolerated(0.88) benign(0.003) TCGA-66-2767-01 10 127708298 127708298 G A ADAM12 Nonsense_Mutation p.Q879* 0.12 TCGA-66-2767-01 10 15688894 15688894 G T ITGA8 Missense_Mutation p.F386L 0.21 deleterious(0) possibly_damaging(0.744) TCGA-66-2767-01 10 17905647 17905647 A G MRC1L1 Missense_Mutation p.I580V 0.13 benign(0.003) TCGA-66-2767-01 10 21134270 21134270 C G NEBL Missense_Mutation p.E382Q 0.15 tolerated(0.36) benign(0.039) TCGA-66-2767-01 10 25701259 25701259 G A GPR158 Missense_Mutation p.G398S 0.13 deleterious(0) probably_damaging(0.994) TCGA-66-2767-01 10 31809823 31809823 A C ZEB1 Missense_Mutation p.K521N 0.11 deleterious(0.02) benign(0.024) TCGA-66-2767-01 10 45953836 45953836 C A MARCH8 Nonsense_Mutation p.E243* 0.11 TCGA-66-2767-01 10 50819838 50819838 G T SLC18A3 Missense_Mutation p.R351L 0.08 tolerated(0.09) benign(0.061) TCGA-66-2767-01 10 52005028 52005028 C A ASAH2 Missense_Mutation p.G105V 0.07 deleterious(0) probably_damaging(1) TCGA-66-2767-01 10 5979143 5979143 C A FBXO18 Missense_Mutation p.A1062E 0.13 deleterious(0.01) possibly_damaging(0.906) TCGA-66-2767-01 10 61830845 61830845 A G ANK3 Missense_Mutation p.I3265T 0.21 benign(0) TCGA-66-2767-01 10 64573941 64573941 T C EGR2 Missense_Mutation p.T153A 0.21 tolerated(0.53) benign(0.013) TCGA-66-2767-01 10 67863009 67863009 T G CTNNA3 Splice_Site p.X629_splice 0.24 TCGA-66-2767-01 10 68687148 68687148 G T LRRTM3 Missense_Mutation p.K158N 0.26 deleterious(0) probably_damaging(1) TCGA-66-2767-01 10 71158372 71158372 G A HK1 Silent p.Q803Q 0.24 TCGA-66-2767-01 10 86133613 86133613 C G CCSER2 Intron 0.05 TCGA-66-2767-01 11 1018740 1018740 G T MUC6 Missense_Mutation p.T1354K 0.19 unknown(0) TCGA-66-2767-01 11 116661393 116661393 G T APOA5 Silent p.T184T 0.33 TCGA-66-2767-01 11 116732021 116732021 G C SIK3 Silent p.P692P 0.25 TCGA-66-2767-01 11 118065080 118065080 T A AMICA1 Missense_Mutation p.K382M 0.10 deleterious(0.01) benign(0.023) TCGA-66-2767-01 11 120998575 120998575 G T TECTA Missense_Mutation p.G630V 0.33 deleterious(0.01) probably_damaging(0.97) TCGA-66-2767-01 11 124189385 124189385 C T OR8D2 Missense_Mutation p.A237T 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-66-2767-01 11 124310358 124310358 A G OR8B8 Silent p.G208G 0.33 TCGA-66-2767-01 11 134022717 134022717 G A NCAPD3 3'UTR 0.20 TCGA-66-2767-01 11 22242756 22242756 G T ANO5 Silent p.A98A 0.16 TCGA-66-2767-01 11 45672017 45672017 G A CHST1 Missense_Mutation p.R153C 0.16 deleterious(0) probably_damaging(1) TCGA-66-2767-01 11 499054 499054 T C RNH1 Missense_Mutation p.Q192R 0.18 tolerated(0.59) benign(0.001) TCGA-66-2767-01 11 50003175 50003175 C T OR4C12 Missense_Mutation p.R288K 0.17 deleterious_low_confidence(0.02) probably_damaging(0.986) TCGA-66-2767-01 11 5142454 5142454 G A OR52A4 RNA 0.14 TCGA-66-2767-01 11 5221405 5221405 T G OR51V1 Missense_Mutation p.N176H 0.12 tolerated(0.42) benign(0.003) TCGA-66-2767-01 11 55433649 55433649 C A OR4C6 3'UTR 0.33 TCGA-66-2767-01 11 55735469 55735469 C A OR10AG1 Missense_Mutation p.L157F 0.14 deleterious(0.01) possibly_damaging(0.707) TCGA-66-2767-01 11 55944267 55944267 C A OR5J2 Silent p.P58P 0.18 TCGA-66-2767-01 11 56086192 56086192 C A OR8K3 Nonsense_Mutation p.S137* 0.18 TCGA-66-2767-01 11 56143637 56143637 G A OR8U1 Missense_Mutation p.D180N 0.21 deleterious(0) probably_damaging(1) TCGA-66-2767-01 11 58170463 58170463 A T OR5B3 Silent p.A140A 0.19 TCGA-66-2767-01 11 58189883 58189883 G C OR5B2 Missense_Mutation p.N284K 0.19 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-66-2767-01 11 59245001 59245001 G T OR4D10 Missense_Mutation p.L33F 0.22 tolerated(0.53) benign(0.005) TCGA-66-2767-01 11 59811058 59811058 C A OOSP2 Silent p.R61R 0.20 TCGA-66-2767-01 11 6913159 6913160 - TCTGTGGA OR2D2 Frame_Shift_Ins p.T192Pfs*17 0.07 TCGA-66-2767-01 11 84027982 84027982 G A DLG2 Intron 0.12 TCGA-66-2767-01 11 92899094 92899094 C A SLC36A4 Missense_Mutation p.G286V 0.27 deleterious(0) probably_damaging(1) TCGA-66-2767-01 11 9530358 9530358 A C ZNF143 Missense_Mutation p.E447A 0.17 deleterious(0) probably_damaging(0.938) TCGA-66-2767-01 12 102576327 102576327 G T PARPBP Missense_Mutation p.R395S 0.20 tolerated(0.06) benign(0.094) TCGA-66-2767-01 12 114387903 114387903 T C RBM19 Missense_Mutation p.N353D 0.16 tolerated(0.17) benign(0.12) TCGA-66-2767-01 12 124158247 124158247 G T TCTN2 Missense_Mutation p.C118F 0.20 deleterious(0) probably_damaging(0.988) TCGA-66-2767-01 12 124303521 124303521 G T DNAH10 Missense_Mutation p.V1151F 0.17 benign(0.24) TCGA-66-2767-01 12 124979765 124979765 C A NCOR2 Silent p.T11T 0.28 TCGA-66-2767-01 12 132496111 132496111 C T EP400 Missense_Mutation p.R1125C 0.21 unknown(0) TCGA-66-2767-01 12 1480998 1480998 G A ERC1 Splice_Site p.X927_splice 0.06 TCGA-66-2767-01 12 18435602 18435602 G A PIK3C2G Missense_Mutation p.G196E 0.43 tolerated(0.58) benign(0.008) TCGA-66-2767-01 12 18854689 18854689 C T PLCZ1 Missense_Mutation p.V296I 0.05 tolerated(0.4) benign(0.042) TCGA-66-2767-01 12 2024039 2024039 C G CACNA2D4 Missense_Mutation p.G97A 0.14 deleterious(0.01) possibly_damaging(0.776) TCGA-66-2767-01 12 20874755 20874755 C A SLCO1C1 Missense_Mutation p.P265T 0.35 deleterious(0.01) possibly_damaging(0.809) TCGA-66-2767-01 12 24985698 24985698 A G BCAT1 Missense_Mutation p.C347R 0.41 deleterious(0) probably_damaging(0.984) TCGA-66-2767-01 12 2943847 2943847 C T NRIP2 Silent p.P101P 0.07 TCGA-66-2767-01 12 40703026 40703026 C T LRRK2 Silent p.F1436F 0.12 TCGA-66-2767-01 12 48740994 48740994 G T ZNF641 Intron 0.22 TCGA-66-2767-01 12 49448310 49448310 C T KMT2D Splice_Site p.X134_splice 0.08 TCGA-66-2767-01 12 5153548 5153548 C A KCNA5 Missense_Mutation p.P79T 0.38 tolerated_low_confidence(0.16) benign(0.002) TCGA-66-2767-01 12 52714744 52714744 T C KRT83 Missense_Mutation p.I126V 0.24 deleterious(0.03) benign(0.258) TCGA-66-2767-01 12 53715196 53715196 T A AAAS Silent p.L18L 0.27 TCGA-66-2767-01 12 57963315 57963315 C T KIF5A Intron 0.16 TCGA-66-2767-01 12 6979488 6979488 C T TPI1 Missense_Mutation p.L268F 0.39 deleterious(0.01) benign(0.146) TCGA-66-2767-01 12 72092691 72092691 G A TMEM19 Missense_Mutation p.G217R 0.29 deleterious(0) probably_damaging(0.995) TCGA-66-2767-01 12 73015511 73015511 G C TRHDE Missense_Mutation p.W840C 0.27 deleterious(0) probably_damaging(0.999) TCGA-66-2767-01 12 78360035 78360035 T A NAV3 Missense_Mutation p.S147R 0.08 deleterious(0) benign(0.007) TCGA-66-2767-01 12 80648345 80648345 G A OTOGL Missense_Mutation p.C470Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-66-2767-01 12 8376048 8376048 C G FAM90A1 Silent p.L143L 0.04 TCGA-66-2767-01 12 96691046 96691046 A T CDK17 Splice_Site p.X291_splice 0.22 TCGA-66-2767-01 13 19748086 19748086 C A TUBA3C Missense_Mutation p.D424Y 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-66-2767-01 13 21163959 21163959 A G IFT88 Missense_Mutation p.K64E 0.32 tolerated(0.07) benign(0.275) TCGA-66-2767-01 13 23911629 23911629 C A SACS Missense_Mutation p.G2129V 0.26 probably_damaging(1) TCGA-66-2767-01 13 32914593 32914593 G A BRCA2 Missense_Mutation p.R2034H 0.27 tolerated(1) benign(0) TCGA-66-2767-01 13 84454001 84454001 C A SLITRK1 Missense_Mutation p.G548C 0.28 deleterious(0.02) possibly_damaging(0.811) TCGA-66-2767-01 13 88329379 88329379 A T SLITRK5 Missense_Mutation p.E579V 0.09 deleterious(0) probably_damaging(0.998) TCGA-66-2767-01 13 88329602 88329602 C G SLITRK5 Silent p.G653G 0.27 TCGA-66-2767-01 14 100331948 100331948 G T EML1 Silent p.G116G 0.18 TCGA-66-2767-01 14 105945787 105945787 C G CRIP2 Silent p.P246P 0.08 TCGA-66-2767-01 14 20403890 20403890 G T OR4K1 Missense_Mutation p.G22V 0.06 deleterious(0.01) benign(0.032) TCGA-66-2767-01 14 20404050 20404050 C A OR4K1 Missense_Mutation p.N75K 0.18 deleterious(0) benign(0.119) TCGA-66-2767-01 14 20444630 20444630 T C OR4K15 Missense_Mutation p.V318A 0.28 deleterious(0) benign(0.103) TCGA-66-2767-01 14 22279906 22279906 C G TRAV9-1 Missense_Mutation p.P32R 0.12 deleterious(0.01) benign(0) TCGA-66-2767-01 14 47120427 47120427 C A RPL10L Missense_Mutation p.W171C 0.23 deleterious(0) probably_damaging(0.934) TCGA-66-2767-01 14 51398405 51398405 G A PYGL Nonsense_Mutation p.R172* 0.31 TCGA-66-2767-01 14 58790254 58790254 G T ARID4A Missense_Mutation p.K167N 0.36 deleterious(0.01) benign(0.424) TCGA-66-2767-01 14 64421613 64421613 C A SYNE2 Missense_Mutation p.P256H 0.41 probably_damaging(0.999) TCGA-66-2767-01 14 64989632 64989632 T C ZBTB1 Silent p.C470C 0.30 TCGA-66-2767-01 14 95921782 95921782 C A SYNE3 Nonsense_Mutation p.E357* 0.10 TCGA-66-2767-01 15 22332544 22332544 G A RP11-69H14.6 RNA 0.08 TCGA-66-2767-01 15 22382732 22382732 C A OR4N4 Missense_Mutation p.S87Y 0.06 tolerated(0.16) benign(0.013) TCGA-66-2767-01 15 25417863 25417863 C A SNORD115-2 RNA 0.16 TCGA-66-2767-01 15 26792856 26792856 T G GABRB3 3'UTR 0.27 TCGA-66-2767-01 15 40280230 40280230 G A EIF2AK4 Missense_Mutation p.G817E 0.12 tolerated(0.06) probably_damaging(0.913) TCGA-66-2767-01 15 48533732 48533732 C A SLC12A1 Silent p.P412P 0.14 TCGA-66-2767-01 15 56657749 56657749 G T TEX9 Intron 0.21 TCGA-66-2767-01 15 75122707 75122707 G T CPLX3 3'UTR 0.27 TCGA-66-2767-01 15 91835819 91835819 G T SV2B 3'UTR 0.31 TCGA-66-2767-01 16 1607944 1607944 G T IFT140 Silent p.L797L 0.06 TCGA-66-2767-01 16 20788733 20788733 A G ACSM3 Missense_Mutation p.K157E 0.07 deleterious(0.02) benign(0.403) TCGA-66-2767-01 16 21721274 21721274 G A OTOA Silent p.L390L 0.09 TCGA-66-2767-01 16 25255279 25255279 C A ZKSCAN2 Missense_Mutation p.R603M 0.30 tolerated(0.22) benign(0.157) TCGA-66-2767-01 16 26147076 26147076 G C HS3ST4 Missense_Mutation p.R293T 0.29 deleterious(0) probably_damaging(1) TCGA-66-2767-01 16 3107201 3107201 C T MMP25 Nonsense_Mutation p.Q277* 0.09 TCGA-66-2767-01 16 31419188 31419188 C T ITGAD Silent p.A320A 0.10 TCGA-66-2767-01 16 31473727 31473727 G T ARMC5 Missense_Mutation p.V287F 0.24 tolerated(0.08) probably_damaging(1) TCGA-66-2767-01 16 460303 460303 T A DECR2 Missense_Mutation p.V133E 0.14 deleterious(0) probably_damaging(0.995) TCGA-66-2767-01 16 47494854 47494854 G A ITFG1 Missense_Mutation p.H35Y 0.19 tolerated(0.06) benign(0.058) TCGA-66-2767-01 16 48158147 48158147 G C ABCC12 Missense_Mutation p.L522V 0.29 tolerated(0.05) possibly_damaging(0.808) TCGA-66-2767-01 16 50348274 50348274 C G ADCY7 Missense_Mutation p.D976E 0.10 tolerated(0.21) probably_damaging(0.999) TCGA-66-2767-01 16 56917983 56917983 C T SLC12A3 Silent p.Y564Y 0.09 TCGA-66-2767-01 16 68055731 68055731 G A DDX28 Missense_Mutation p.R459W 0.14 deleterious(0) probably_damaging(1) TCGA-66-2767-01 16 68056949 68056949 G A DDX28 Missense_Mutation p.R53W 0.27 tolerated(0.17) benign(0.425) TCGA-66-2767-01 16 71663316 71663316 C A MARVELD3 Silent p.R172R 0.13 TCGA-66-2767-01 16 76555115 76555115 C A CNTNAP4 Missense_Mutation p.A742E 0.15 deleterious(0) probably_damaging(0.98) TCGA-66-2767-01 16 88643785 88643785 T A ZC3H18 Missense_Mutation p.V85E 0.14 deleterious_low_confidence(0.03) unknown(0) TCGA-66-2767-01 16 89799888 89799888 A T ZNF276 Splice_Site p.X427_splice 0.11 TCGA-66-2767-01 17 18023488 18023488 C G MYO15A Missense_Mutation p.F458L 0.07 benign(0.153) TCGA-66-2767-01 17 21319268 21319268 G A KCNJ12 Missense_Mutation p.R205H 0.14 deleterious(0) benign(0.229) TCGA-66-2767-01 17 26925919 26925919 G - SPAG5 Frame_Shift_Del p.Q16Rfs*7 0.20 TCGA-66-2767-01 17 28819754 28819754 A T GOSR1 Missense_Mutation p.E166D 0.17 deleterious(0) probably_damaging(1) TCGA-66-2767-01 17 35898443 35898443 C T SYNRG Missense_Mutation p.G1167D 0.16 deleterious(0) probably_damaging(1) TCGA-66-2767-01 17 3919650 3919650 C A ZZEF1 Silent p.S2704S 0.23 TCGA-66-2767-01 17 40135656 40135656 T C DNAJC7 Splice_Site p.X337_splice 0.27 TCGA-66-2767-01 17 40985612 40985612 C T PSME3 5'UTR 0.24 TCGA-66-2767-01 17 45056142 45056142 G A RPRML Missense_Mutation p.L78F 0.11 deleterious(0) probably_damaging(0.976) TCGA-66-2767-01 17 45895919 45895919 G A OSBPL7 Missense_Mutation p.R145C 0.09 deleterious(0) benign(0.386) TCGA-66-2767-01 17 51902007 51902007 A T KIF2B Missense_Mutation p.N538I 0.17 deleterious(0) probably_damaging(0.984) TCGA-66-2767-01 17 56060750 56060750 T C VEZF1 Missense_Mutation p.H13R 0.24 deleterious(0.01) benign(0.006) TCGA-66-2767-01 17 56232691 56232691 G A OR4D1 Missense_Mutation p.M59I 0.03 deleterious(0.01) possibly_damaging(0.507) TCGA-66-2767-01 17 57288897 57288899 CTC TT SMG8 Frame_Shift_Del p.S496* 0.17 TCGA-66-2767-01 17 67047206 67047206 A T ABCA9 Missense_Mutation p.L21H 0.09 deleterious(0) probably_damaging(0.992) TCGA-66-2767-01 17 73914282 73914282 C T FBF1 Missense_Mutation p.R721Q 0.19 tolerated(1) benign(0.01) TCGA-66-2767-01 17 74141361 74141361 C T RNF157 Silent p.E665E 0.27 TCGA-66-2767-01 17 79514179 79514179 G A C17orf70 Silent p.S643S 0.21 TCGA-66-2767-01 17 8170202 8170202 G T PFAS Missense_Mutation p.G985W 0.24 deleterious(0) probably_damaging(1) TCGA-66-2767-01 17 9676195 9676195 G A DHRS7C Nonsense_Mutation p.R207* 0.10 TCGA-66-2767-01 18 10471799 10471799 C T APCDD1 Missense_Mutation p.P172L 0.09 tolerated(0.32) benign(0.324) TCGA-66-2767-01 18 2960765 2960765 G T LPIN2 Missense_Mutation p.A25D 0.26 deleterious(0) probably_damaging(1) TCGA-66-2767-01 18 319907 319907 T C COLEC12 3'UTR 0.23 TCGA-66-2767-01 18 65181205 65181205 C G DSEL Missense_Mutation p.R224P 0.08 deleterious(0) probably_damaging(1) TCGA-66-2767-01 18 76936834 76936834 A T ATP9B Missense_Mutation p.D267V 0.17 deleterious(0) probably_damaging(0.989) TCGA-66-2767-01 18 77710832 77710832 G A PQLC1 Missense_Mutation p.P32L 0.14 deleterious(0) probably_damaging(1) TCGA-66-2767-01 19 10226670 10226670 C T EIF3G Missense_Mutation p.G226R 0.48 deleterious(0) probably_damaging(0.993) TCGA-66-2767-01 19 10439520 10439520 G A RAVER1 Missense_Mutation p.S202L 0.37 tolerated(0.09) probably_damaging(1) TCGA-66-2767-01 19 10657905 10657905 G C ATG4D Missense_Mutation p.V271L 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-66-2767-01 19 12738992 12738992 G A ZNF791 Missense_Mutation p.E217K 0.15 tolerated(0.3) benign(0.015) TCGA-66-2767-01 19 15807890 15807890 C A CYP4F12 Missense_Mutation p.Q524K 0.27 tolerated_low_confidence(0.11) benign(0.024) TCGA-66-2767-01 19 16032946 16032946 C T CYP4F11 Nonsense_Mutation p.W339* 0.06 TCGA-66-2767-01 19 17835951 17835951 G T MAP1S Missense_Mutation p.G133W 0.32 deleterious(0) probably_damaging(1) TCGA-66-2767-01 19 21366765 21366765 A - ZNF431 Frame_Shift_Del p.N554Tfs*33 0.25 TCGA-66-2767-01 19 21477059 21477059 A T ZNF708 Missense_Mutation p.S237T 0.28 tolerated(0.08) benign(0.081) TCGA-66-2767-01 19 22375845 22375845 T G ZNF676 Silent p.R35R 0.30 TCGA-66-2767-01 19 30934746 30934746 G C ZNF536 Missense_Mutation p.D93H 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-66-2767-01 19 34887209 34887209 G A GPI Missense_Mutation p.D367N 0.17 tolerated_low_confidence(0.31) probably_damaging(0.993) TCGA-66-2767-01 19 36219920 36219920 C A KMT2B Missense_Mutation p.H1574Q 0.05 benign(0.284) TCGA-66-2767-01 19 36594257 36594257 C T WDR62 Missense_Mutation p.T1176M 0.26 deleterious(0.04) possibly_damaging(0.603) TCGA-66-2767-01 19 36673707 36673707 G A ZNF565 Silent p.G387G 0.08 TCGA-66-2767-01 19 38877212 38877212 G A GGN Silent p.A230A 0.05 TCGA-66-2767-01 19 39995985 39995985 G T DLL3 Silent p.G329G 0.16 TCGA-66-2767-01 19 43579569 43579569 C A PSG2 Nonsense_Mutation p.E216* 0.29 TCGA-66-2767-01 19 46094366 46094366 G T GPR4 Silent p.G253G 0.39 TCGA-66-2767-01 19 50747508 50747508 G - MYH14 Frame_Shift_Del p.M376Wfs*13 0.16 TCGA-66-2767-01 19 50753939 50753939 G T MYH14 Silent p.A608A 0.27 TCGA-66-2767-01 19 52149112 52149112 C G SIGLEC14 Missense_Mutation p.G208A 0.26 deleterious(0) probably_damaging(0.922) TCGA-66-2767-01 19 53612976 53612976 T C ZNF415 Missense_Mutation p.N108D 0.04 deleterious(0.02) benign(0.017) TCGA-66-2767-01 19 54760442 54760442 C A LILRB5 Missense_Mutation p.V89L 0.10 deleterious(0) benign(0.05) TCGA-66-2767-01 19 54974197 54974197 C G LENG9 Missense_Mutation p.E193D 0.12 tolerated(0.29) benign(0.002) TCGA-66-2767-01 19 55451509 55451509 C T NLRP7 Silent p.L226L 0.10 TCGA-66-2767-01 19 55776691 55776691 G A HSPBP1 Silent p.L320L 0.32 TCGA-66-2767-01 19 56973798 56973798 G A ZNF667 Intron 0.04 TCGA-66-2767-01 19 57065666 57065666 C T ZFP28 Silent p.P504P 0.25 TCGA-66-2767-01 19 57326170 57326170 C A PEG3 Missense_Mutation p.A1214S 0.28 tolerated(0.59) benign(0.013) TCGA-66-2767-01 19 5843758 5843758 C T FUT3 3'UTR 0.40 TCGA-66-2767-01 19 58805630 58805630 G A ZNF8 Silent p.E152E 0.30 TCGA-66-2767-01 1 100477024 100477024 G A SLC35A3 Missense_Mutation p.G190E 0.09 deleterious(0) probably_damaging(0.992) TCGA-66-2767-01 1 101188862 101188862 A T VCAM1 Silent p.T209T 0.27 TCGA-66-2767-01 1 118558758 118558758 G A SPAG17 Missense_Mutation p.H1373Y 0.25 tolerated(0.49) possibly_damaging(0.533) TCGA-66-2767-01 1 145566772 145566772 G T ANKRD35 Silent p.L958L 0.05 TCGA-66-2767-01 1 156554721 156554721 G A TTC24 Missense_Mutation p.G435E 0.22 tolerated(0.26) benign(0.003) TCGA-66-2767-01 1 157801692 157801692 C T CD5L 3'UTR 0.13 TCGA-66-2767-01 1 158262570 158262570 G T CD1C Missense_Mutation p.Q265H 0.10 deleterious(0.02) benign(0.248) TCGA-66-2767-01 1 158324246 158324246 C T CD1E Silent p.A46A 0.11 TCGA-66-2767-01 1 158368476 158368476 G T OR10T2 Silent p.R261R 0.15 TCGA-66-2767-01 1 158650461 158650461 T C SPTA1 Missense_Mutation p.H197R 0.09 tolerated(0.08) benign(0.026) TCGA-66-2767-01 1 159921550 159921550 G C SLAMF9 Missense_Mutation p.I257M 0.13 tolerated(0.08) benign(0.38) TCGA-66-2767-01 1 160917807 160917807 C A ITLN2 Missense_Mutation p.G246V 0.29 deleterious(0) probably_damaging(0.988) TCGA-66-2767-01 1 168054995 168054995 A G GPR161 Missense_Mutation p.V475A 0.19 deleterious_low_confidence(0.01) benign(0.234) TCGA-66-2767-01 1 168513212 168513212 C - XCL2 5'UTR 0.13 TCGA-66-2767-01 1 169555541 169555541 C A F5 Silent p.A28A 0.27 TCGA-66-2767-01 1 173516829 173516829 A C SLC9C2 Missense_Mutation p.M519R 0.25 deleterious(0) possibly_damaging(0.804) TCGA-66-2767-01 1 175292496 175292496 G A TNR Silent p.F1358F 0.15 TCGA-66-2767-01 1 181707532 181707532 G A CACNA1E Silent p.T1194T 0.23 TCGA-66-2767-01 1 181767477 181767477 G C CACNA1E Missense_Mutation p.S2150T 0.26 deleterious(0.04) possibly_damaging(0.827) TCGA-66-2767-01 1 186315403 186315403 C T TPR Missense_Mutation p.R987H 0.12 benign(0) TCGA-66-2767-01 1 186957614 186957614 G C PLA2G4A Missense_Mutation p.E742Q 0.09 tolerated_low_confidence(0.21) benign(0.135) TCGA-66-2767-01 1 196398707 196398707 C G KCNT2 Missense_Mutation p.Q273H 0.12 deleterious(0) possibly_damaging(0.575) TCGA-66-2767-01 1 196879560 196879560 T A CFHR4 Missense_Mutation p.Y316N 0.27 tolerated(0.24) possibly_damaging(0.485) TCGA-66-2767-01 1 197030095 197030095 C T F13B Missense_Mutation p.G188R 0.25 deleterious(0.01) benign(0.25) TCGA-66-2767-01 1 201193963 201193963 G A IGFN1 Missense_Mutation p.G3483R 0.12 possibly_damaging(0.882) TCGA-66-2767-01 1 203098306 203098306 C T ADORA1 Missense_Mutation p.L113F 0.06 tolerated(0.06) benign(0.227) TCGA-66-2767-01 1 215777494 215777494 G T KCTD3 Nonsense_Mutation p.E387* 0.15 TCGA-66-2767-01 1 215972274 215972274 T A USH2A Missense_Mutation p.E3311D 0.28 benign(0.002) TCGA-66-2767-01 1 21894615 21894615 C T ALPL Missense_Mutation p.R223W 0.23 deleterious(0) probably_damaging(1) TCGA-66-2767-01 1 226924302 226924302 C G ITPKB Silent p.R286R 0.28 TCGA-66-2767-01 1 229438704 229438704 G T RAB4A Missense_Mutation p.A213S 0.29 tolerated(0.7) benign(0.001) TCGA-66-2767-01 1 230838938 230838938 G T AGT Silent p.A469A 0.13 TCGA-66-2767-01 1 232600907 232600907 C A SIPA1L2 Silent p.L833L 0.26 TCGA-66-2767-01 1 236399548 236399548 G A ERO1LB Intron 0.12 TCGA-66-2767-01 1 237870440 237870440 C A RYR2 Missense_Mutation p.P3258T 0.13 benign(0.034) TCGA-66-2767-01 1 237897051 237897051 G A RYR2 Missense_Mutation p.A3696T 0.23 possibly_damaging(0.489) TCGA-66-2767-01 1 237947095 237947095 C G RYR2 Missense_Mutation p.S4028W 0.25 probably_damaging(0.985) TCGA-66-2767-01 1 247654673 247654673 C A OR2W5 RNA 0.10 TCGA-66-2767-01 1 247655059 247655059 C A OR2W5 RNA 0.14 TCGA-66-2767-01 1 248366523 248366523 G T OR2M3 Missense_Mutation p.D52Y 0.27 deleterious(0.02) benign(0.112) TCGA-66-2767-01 1 248685311 248685311 C A OR2G6 Missense_Mutation p.R122S 0.14 deleterious(0) possibly_damaging(0.857) TCGA-66-2767-01 1 31194163 31194163 A G MATN1 Intron 0.35 TCGA-66-2767-01 1 38330016 38330016 G A INPP5B Missense_Mutation p.S865L 0.10 deleterious(0) probably_damaging(0.982) TCGA-66-2767-01 1 43870165 43870165 G T SZT2 Nonsense_Mutation p.E148* 0.32 TCGA-66-2767-01 1 86210415 86210415 C A COL24A1 Missense_Mutation p.G1536C 0.29 deleterious(0) probably_damaging(1) TCGA-66-2767-01 1 9188713 9188713 T A GPR157 Missense_Mutation p.H125L 0.33 deleterious(0) probably_damaging(1) TCGA-66-2767-01 1 978953 978953 G A AGRN Missense_Mutation p.E547K 0.06 tolerated(0.1) possibly_damaging(0.635) TCGA-66-2767-01 1 982720 982720 C A AGRN Missense_Mutation p.F1134L 0.23 deleterious(0) possibly_damaging(0.867) TCGA-66-2767-01 20 14306094 14306094 T C FLRT3 3'UTR 0.06 TCGA-66-2767-01 20 3520918 3520918 A T ATRN Missense_Mutation p.S182C 0.16 deleterious(0) possibly_damaging(0.876) TCGA-66-2767-01 20 43058160 43058160 C A HNF4A Intron 0.25 TCGA-66-2767-01 20 44174491 44174491 A C EPPIN Intron 0.16 TCGA-66-2767-01 20 44665972 44665972 G T SLC12A5 Missense_Mutation p.G210V 0.18 deleterious(0) probably_damaging(1) TCGA-66-2767-01 20 44755307 44755307 C T CD40 Nonsense_Mutation p.Q176* 0.14 TCGA-66-2767-01 20 56227421 56227421 G A PMEPA1 Silent p.R184R 0.18 TCGA-66-2767-01 20 57415203 57415203 C A RP4-806M20.3 5'Flank 0.12 TCGA-66-2767-01 20 61386124 61386124 C A NTSR1 Missense_Mutation p.R268S 0.13 tolerated(0.96) benign(0.059) TCGA-66-2767-01 20 61522414 61522414 C A DIDO1 Missense_Mutation p.G1147C 0.14 probably_damaging(1) TCGA-66-2767-01 21 46021554 46021554 T G KRTAP10-7 Missense_Mutation p.C345G 0.18 deleterious(0.03) unknown(0) TCGA-66-2767-01 21 47423790 47423790 C A COL6A1 Missense_Mutation p.R984S 0.30 deleterious(0.01) possibly_damaging(0.859) TCGA-66-2767-01 22 19969579 19969579 C T ARVCF Silent p.T82T 0.17 TCGA-66-2767-01 22 20939162 20939162 G - MED15 Frame_Shift_Del p.V609Cfs*38 0.25 TCGA-66-2767-01 22 29726514 29726514 C T AP1B1 Silent p.A873A 0.25 TCGA-66-2767-01 22 31019016 31019016 G A TCN2 Missense_Mutation p.G390R 0.09 tolerated(0.19) benign(0.046) TCGA-66-2767-01 22 32791054 32791054 C A RTCB Missense_Mutation p.A380S 0.09 tolerated(0.07) probably_damaging(0.989) TCGA-66-2767-01 22 38120361 38120361 A G TRIOBP Missense_Mutation p.T600A 0.09 tolerated_low_confidence(0.17) possibly_damaging(0.636) TCGA-66-2767-01 22 39357401 39357401 C T APOBEC3A Missense_Mutation p.L62F 0.11 tolerated(0.16) benign(0.082) TCGA-66-2767-01 22 41077401 41077401 T G MCHR1 Silent p.P246P 0.15 TCGA-66-2767-01 22 41739497 41739497 G A ZC3H7B Missense_Mutation p.R459Q 0.10 deleterious(0) possibly_damaging(0.676) TCGA-66-2767-01 2 102805625 102805625 G - IL1RL2 Frame_Shift_Del p.E51Kfs*4 0.20 TCGA-66-2767-01 2 109103087 109103087 G C GCC2 Missense_Mutation p.E1305Q 0.20 tolerated(0.05) benign(0.048) TCGA-66-2767-01 2 109379867 109379867 G C RANBP2 Missense_Mutation p.G958R 0.19 deleterious(0) benign(0) TCGA-66-2767-01 2 113513644 113513644 G T CKAP2L Missense_Mutation p.T435K 0.22 deleterious(0.03) possibly_damaging(0.687) TCGA-66-2767-01 2 113940807 113940807 G A PSD4 Silent p.E258E 0.24 TCGA-66-2767-01 2 125671848 125671848 C G CNTNAP5 Missense_Mutation p.R1302G 0.24 deleterious(0) possibly_damaging(0.809) TCGA-66-2767-01 2 152529183 152529183 C A NEB Missense_Mutation p.K1333N 0.26 probably_damaging(1) TCGA-66-2767-01 2 166188012 166188012 C A SCN2A Silent p.L774L 0.26 TCGA-66-2767-01 2 179641088 179641088 G T TTN Missense_Mutation p.Q1835K 0.21 TCGA-66-2767-01 2 202632082 202632082 C T ALS2 Silent p.K15K 0.36 TCGA-66-2767-01 2 202672269 202672269 G T CDK15 Missense_Mutation p.G59V 0.08 tolerated_low_confidence(0.24) benign(0.394) TCGA-66-2767-01 2 211018231 211018231 T C KANSL1L Missense_Mutation p.K359R 0.20 tolerated(0.3) benign(0.043) TCGA-66-2767-01 2 211299196 211299196 T A LANCL1 3'UTR 0.21 TCGA-66-2767-01 2 241621951 241621951 G C AQP12B Missense_Mutation p.L102V 0.06 deleterious(0) probably_damaging(0.955) TCGA-66-2767-01 2 26680977 26680977 C A OTOF 3'UTR 0.19 TCGA-66-2767-01 2 27447308 27447308 G T CAD Missense_Mutation p.G402W 0.23 deleterious(0) probably_damaging(1) TCGA-66-2767-01 2 32865348 32865348 G T TTC27 Silent p.L136L 0.19 TCGA-66-2767-01 2 54856314 54856314 G T SPTBN1 Silent p.R681R 0.21 TCGA-66-2767-01 2 63631360 63631360 G C WDPCP Missense_Mutation p.R420G 0.04 tolerated(0.33) benign(0.112) TCGA-66-2767-01 2 7036106 7036106 G C RSAD2 3'UTR 0.22 TCGA-66-2767-01 2 76975787 76975787 C A LRRTM4 3'UTR 0.28 TCGA-66-2767-01 2 79384210 79384210 G T REG3A 3'UTR 0.12 TCGA-66-2767-01 2 80773066 80773066 C G CTNNA2 Missense_Mutation p.P473R 0.17 deleterious(0) probably_damaging(0.989) TCGA-66-2767-01 2 98373570 98373570 C T TMEM131 Missense_Mutation p.E1882K 0.23 deleterious_low_confidence(0.01) benign(0.353) TCGA-66-2767-01 2 99294817 99294817 C A MGAT4A Missense_Mutation p.R71L 0.18 deleterious(0.04) benign(0.04) TCGA-66-2767-01 2 99635067 99635067 A G TSGA10 Silent p.N618N 0.21 TCGA-66-2767-01 3 100067652 100067652 C A NIT2 Missense_Mutation p.Q171K 0.16 tolerated(0.85) benign(0.018) TCGA-66-2767-01 3 100471703 100471703 A T ABI3BP Missense_Mutation p.Y973N 0.18 deleterious(0) probably_damaging(0.969) TCGA-66-2767-01 3 101384599 101384599 G A ZBTB11 Silent p.L278L 0.17 TCGA-66-2767-01 3 112252987 112252987 T C ATG3 Intron 0.20 TCGA-66-2767-01 3 118865207 118865207 A T C3orf30 Silent p.L57L 0.33 TCGA-66-2767-01 3 128060231 128060231 G A EEFSEC Silent p.A314A 0.06 TCGA-66-2767-01 3 12861610 12861610 C T CAND2 Silent p.V990V 0.31 TCGA-66-2767-01 3 129023455 129023455 C G HMCES Missense_Mutation p.S284R 0.09 deleterious(0.01) probably_damaging(0.917) TCGA-66-2767-01 3 129252634 129252634 C A RHO 3'UTR 0.22 TCGA-66-2767-01 3 147128091 147128091 C T ZIC1 Silent p.F64F 0.12 TCGA-66-2767-01 3 164748556 164748556 C T SI Missense_Mutation p.D946N 0.38 deleterious(0.04) possibly_damaging(0.746) TCGA-66-2767-01 3 164908581 164908581 C A SLITRK3 Missense_Mutation p.R13M 0.07 tolerated(0.35) possibly_damaging(0.498) TCGA-66-2767-01 3 169540063 169540063 C T LRRIQ4 Silent p.H118H 0.06 TCGA-66-2767-01 3 180327959 180327959 G C TTC14 Missense_Mutation p.E648Q 0.09 deleterious_low_confidence(0.04) unknown(0) TCGA-66-2767-01 3 182870216 182870216 A G LAMP3 Missense_Mutation p.S279P 0.08 deleterious(0) probably_damaging(0.915) TCGA-66-2767-01 3 192126091 192126091 T A FGF12 5'UTR 0.25 TCGA-66-2767-01 3 194147857 194147857 A C ATP13A3 Silent p.G1024G 0.10 TCGA-66-2767-01 3 26752019 26752019 C A LRRC3B 3'UTR 0.38 TCGA-66-2767-01 3 31871623 31871623 G T OSBPL10 Missense_Mutation p.P213H 0.21 tolerated(0.12) possibly_damaging(0.88) TCGA-66-2767-01 3 38938695 38938695 T C SCN11A Missense_Mutation p.K682E 0.27 deleterious(0) probably_damaging(0.999) TCGA-66-2767-01 3 38991887 38991887 C T SCN11A 5'UTR 0.41 TCGA-66-2767-01 3 47139531 47139531 G T SETD2 Silent p.R1686R 0.07 TCGA-66-2767-01 3 52361927 52361927 G C DNAH1 Silent p.R256R 0.22 TCGA-66-2767-01 3 52745830 52745830 C T NEK4 Missense_Mutation p.R830H 0.09 tolerated(0.07) benign(0.246) TCGA-66-2767-01 3 93722705 93722705 G T ARL13B Missense_Mutation p.M111I 0.11 tolerated(0.15) benign(0.034) TCGA-66-2767-01 3 97983540 97983540 C A OR5H6 Missense_Mutation p.R138S 0.12 deleterious(0) probably_damaging(0.98) TCGA-66-2767-01 4 102946555 102946555 G A BANK1 Missense_Mutation p.D495N 0.11 tolerated(0.41) benign(0.003) TCGA-66-2767-01 4 111554138 111554139 CG T PITX2 Frame_Shift_Del p.R6Tfs*10 0.17 TCGA-66-2767-01 4 121958642 121958642 A G NDNF Missense_Mutation p.Y162H 0.39 deleterious(0) probably_damaging(0.995) TCGA-66-2767-01 4 125590641 125590641 G C ANKRD50 Nonsense_Mutation p.S1264* 0.07 TCGA-66-2767-01 4 134072945 134072945 C A PCDH10 Missense_Mutation p.S550R 0.15 tolerated(0.51) benign(0.006) TCGA-66-2767-01 4 146824215 146824215 A T ZNF827 Missense_Mutation p.S66T 0.32 deleterious(0) probably_damaging(0.984) TCGA-66-2767-01 4 160244614 160244614 G T RAPGEF2 Missense_Mutation p.D171Y 0.37 deleterious(0) probably_damaging(1) TCGA-66-2767-01 4 185320124 185320124 C T IRF2 Silent p.P213P 0.36 TCGA-66-2767-01 4 187525706 187525724 CTGAAGCCCACTGGCTTAT - FAT1 Frame_Shift_Del p.N3452Tfs*6 0.45 TCGA-66-2767-01 4 47427824 47427824 G T GABRB1 Missense_Mutation p.R405L 0.32 deleterious(0.03) possibly_damaging(0.53) TCGA-66-2767-01 4 48512145 48512145 G C FRYL Silent p.L2775L 0.28 TCGA-66-2767-01 4 70080107 70080107 C G UGT2B11 Missense_Mutation p.E112Q 0.05 deleterious(0.03) benign(0.251) TCGA-66-2767-01 4 89326086 89326086 A T HERC6 Missense_Mutation p.Q384L 0.44 deleterious(0.01) benign(0.147) TCGA-66-2767-01 5 101593694 101593694 A G SLCO4C1 Missense_Mutation p.I409T 0.08 deleterious(0) possibly_damaging(0.728) TCGA-66-2767-01 5 115152145 115152145 G T CDO1 5'UTR 0.10 TCGA-66-2767-01 5 127782240 127782240 C G FBN2 Missense_Mutation p.V296L 0.17 tolerated(0.12) benign(0.117) TCGA-66-2767-01 5 138658546 138658546 G T MATR3 Missense_Mutation p.D680Y 0.13 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-66-2767-01 5 139193192 139193192 C T PSD2 Missense_Mutation p.R224C 0.10 tolerated(0.09) benign(0.002) TCGA-66-2767-01 5 140481580 140481580 C A PCDHB3 Silent p.P449P 0.25 TCGA-66-2767-01 5 140515035 140515035 A G PCDHB5 Missense_Mutation p.K7E 0.05 tolerated_low_confidence(0.26) benign(0.011) TCGA-66-2767-01 5 140615439 140615439 C A PCDHB18 RNA 0.22 TCGA-66-2767-01 5 145557152 145557152 C T LARS Missense_Mutation p.R28K 0.08 tolerated(1) benign(0) TCGA-66-2767-01 5 179132809 179132809 G T CANX Nonsense_Mutation p.E43* 0.11 TCGA-66-2767-01 5 26903811 26903811 C A CDH9 Missense_Mutation p.G312C 0.10 deleterious(0) possibly_damaging(0.72) TCGA-66-2767-01 5 26906200 26906200 C T CDH9 Missense_Mutation p.E227K 0.13 deleterious(0) probably_damaging(0.997) TCGA-66-2767-01 5 35874550 35874550 G T IL7R Splice_Site p.X236_splice 0.10 TCGA-66-2767-01 5 38960533 38960533 G A RICTOR Silent p.C606C 0.11 TCGA-66-2767-01 5 54320565 54320565 G A GZMK Missense_Mutation p.G48R 0.15 tolerated(0.09) probably_damaging(0.976) TCGA-66-2767-01 5 5461158 5461158 G T KIAA0947 Nonsense_Mutation p.E571* 0.19 TCGA-66-2767-01 5 65083989 65083989 G C NLN Missense_Mutation p.E335Q 0.12 tolerated(0.51) benign(0.005) TCGA-66-2767-01 5 68677865 68677865 C T RAD17 Silent p.F174F 0.07 TCGA-66-2767-01 5 82837222 82837222 A C VCAN Missense_Mutation p.E2800D 0.08 tolerated(0.08) benign(0.033) TCGA-66-2767-01 5 82948450 82948450 C A HAPLN1 Missense_Mutation p.M98I 0.11 tolerated(1) benign(0.103) TCGA-66-2767-01 5 99871540 99871540 A T FAM174A Missense_Mutation p.E102D 0.27 tolerated(0.1) benign(0.019) TCGA-66-2767-01 6 102307216 102307216 C T GRIK2 Nonsense_Mutation p.R458* 0.07 TCGA-66-2767-01 6 117241518 117241518 G A RFX6 Missense_Mutation p.V410M 0.12 deleterious(0.04) benign(0.09) TCGA-66-2767-01 6 13365729 13365729 A G GFOD1 Missense_Mutation p.V140A 0.33 deleterious(0.01) benign(0.297) TCGA-66-2767-01 6 139581568 139581568 C T TXLNB Missense_Mutation p.D297N 0.17 deleterious(0.03) probably_damaging(0.998) TCGA-66-2767-01 6 148840988 148840988 G T SASH1 Nonsense_Mutation p.E390* 0.17 TCGA-66-2767-01 6 152770771 152770771 G C SYNE1 Missense_Mutation p.S1134C 0.24 possibly_damaging(0.75) TCGA-66-2767-01 6 159166633 159166633 G A SYTL3 Missense_Mutation p.C326Y 0.08 tolerated(0.13) benign(0.072) TCGA-66-2767-01 6 160543159 160543159 G T SLC22A1 Missense_Mutation p.W64C 0.20 deleterious(0) probably_damaging(0.996) TCGA-66-2767-01 6 26123851 26123851 C A HIST1H2BC Missense_Mutation p.E94D 0.31 deleterious_low_confidence(0.02) benign(0.194) TCGA-66-2767-01 6 29408320 29408320 C A OR10C1 Missense_Mutation p.F176L 0.41 deleterious(0.04) benign(0.167) TCGA-66-2767-01 6 32026137 32026137 C T TNXB Missense_Mutation p.S2508N 0.17 benign(0.155) TCGA-66-2767-01 6 42848720 42848721 - A RPL7L1 Intron 0.15 TCGA-66-2767-01 6 43400184 43400184 C A ABCC10 Missense_Mutation p.Q156K 0.03 tolerated(0.15) probably_damaging(0.977) TCGA-66-2767-01 6 46977837 46977837 T C GPR110 Missense_Mutation p.Y445C 0.24 deleterious(0) probably_damaging(0.982) TCGA-66-2767-01 6 55113587 55113587 C G HCRTR2 Missense_Mutation p.S125C 0.04 deleterious(0.05) possibly_damaging(0.617) TCGA-66-2767-01 6 55198597 55198597 C A GFRAL Silent p.P57P 0.10 TCGA-66-2767-01 6 55198628 55198628 C A GFRAL Missense_Mutation p.L68M 0.11 tolerated(0.09) benign(0.126) TCGA-66-2767-01 6 69653876 69653876 T G BAI3 Silent p.A395A 0.09 TCGA-66-2767-01 6 70070787 70070787 C T BAI3 Nonsense_Mutation p.R1208* 0.19 TCGA-66-2767-01 6 87970021 87970021 C G ZNF292 Missense_Mutation p.S2225C 0.11 deleterious(0.05) probably_damaging(0.966) TCGA-66-2767-01 6 88138405 88138405 G T C6ORF165 Missense_Mutation p.G341V 0.17 deleterious(0) benign(0.139) TCGA-66-2767-01 6 96034548 96034548 G T MANEA Missense_Mutation p.S78I 0.24 tolerated(0.19) benign(0.023) TCGA-66-2767-01 7 100388590 100388590 G T ZAN Missense_Mutation p.G2461W 0.35 unknown(0) TCGA-66-2767-01 7 100490047 100490047 C G ACHE Silent p.G487G 0.21 TCGA-66-2767-01 7 103191681 103191681 C G RELN Missense_Mutation p.R2045S 0.11 tolerated(0.14) probably_damaging(0.981) TCGA-66-2767-01 7 105733500 105733500 T C SYPL1 Missense_Mutation p.I180M 0.38 tolerated(0.52) benign(0.078) TCGA-66-2767-01 7 121942175 121942175 C G FEZF1 Missense_Mutation p.G435A 0.17 tolerated(0.38) unknown(0) TCGA-66-2767-01 7 122763268 122763268 A G SLC13A1 Missense_Mutation p.L421P 0.21 deleterious(0) probably_damaging(0.998) TCGA-66-2767-01 7 126249443 126249443 G T GRM8 Silent p.G489G 0.19 TCGA-66-2767-01 7 149510794 149510794 T C SSPO RNA 0.16 TCGA-66-2767-01 7 150439684 150439684 A G GIMAP5 Missense_Mutation p.K153E 0.25 deleterious(0) probably_damaging(0.96) TCGA-66-2767-01 7 19748468 19748468 C A TWISTNB Missense_Mutation p.A58S 0.24 tolerated(0.08) benign(0.425) TCGA-66-2767-01 7 21751351 21751351 G A DNAH11 Missense_Mutation p.E2293K 0.04 probably_damaging(0.996) TCGA-66-2767-01 7 23823201 23823201 G - STK31 Splice_Site p.X690_splice 0.13 TCGA-66-2767-01 7 37172782 37172782 C T ELMO1 Missense_Mutation p.D382N 0.09 deleterious(0) probably_damaging(0.992) TCGA-66-2767-01 7 41729898 41729898 C A INHBA Missense_Mutation p.V211L 0.31 deleterious(0.04) benign(0.028) TCGA-66-2767-01 7 44687346 44687346 A C OGDH Missense_Mutation p.T169P 0.24 tolerated(0.29) benign(0.037) TCGA-66-2767-01 7 5391596 5391596 G A TNRC18 Missense_Mutation p.P1775L 0.19 benign(0.138) TCGA-66-2767-01 7 89793811 89793811 C T STEAP1 Silent p.S261S 0.09 TCGA-66-2767-01 7 95223028 95223028 G T PDK4 Missense_Mutation p.D109E 0.15 deleterious(0.04) benign(0.03) TCGA-66-2767-01 8 100880532 100880532 T C VPS13B Missense_Mutation p.I3769T 0.24 deleterious(0) benign(0.213) TCGA-66-2767-01 8 10465650 10465650 G A RP1L1 Silent p.T1986T 0.25 TCGA-66-2767-01 8 105503432 105503432 C A LRP12 Silent p.T683T 0.21 TCGA-66-2767-01 8 113301694 113301694 A C CSMD3 Silent p.T3016T 0.22 TCGA-66-2767-01 8 113323377 113323377 G C CSMD3 Missense_Mutation p.P2572R 0.11 deleterious(0) probably_damaging(0.997) TCGA-66-2767-01 8 116426166 116426166 T A TRPS1 3'UTR 0.31 TCGA-66-2767-01 8 139144719 139144719 C G FAM135B 3'UTR 0.13 TCGA-66-2767-01 8 145154057 145154057 C T SHARPIN Missense_Mutation p.R325H 0.15 tolerated(0.3) benign(0.004) TCGA-66-2767-01 8 20055041 20055041 C T ATP6V1B2 Nonsense_Mutation p.Q42* 0.20 TCGA-66-2767-01 8 23003215 23003215 C T TNFRSF10D Silent p.K234K 0.11 TCGA-66-2767-01 8 28385506 28385506 A G FZD3 Missense_Mutation p.N410S 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-66-2767-01 8 32505475 32505475 C T NRG1 Intron 0.09 TCGA-66-2767-01 8 38271765 38271765 G A FGFR1 Silent p.G728G 0.06 TCGA-66-2767-01 8 53030906 53030906 G T ST18 Missense_Mutation p.Q951K 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-66-2767-01 8 53852526 53852526 C A NPBWR1 Missense_Mutation p.A20E 0.32 tolerated(0.54) benign(0.001) TCGA-66-2767-01 8 55534012 55534012 C A RP1 Silent p.G162G 0.20 TCGA-66-2767-01 8 55534051 55534051 G T RP1 Missense_Mutation p.R175S 0.18 deleterious(0) possibly_damaging(0.7) TCGA-66-2767-01 8 77618581 77618581 G T ZFHX4 Missense_Mutation p.C753F 0.21 possibly_damaging(0.506) TCGA-66-2767-01 8 88885255 88885255 G T DCAF4L2 Silent p.S315S 0.20 TCGA-66-2767-01 8 88885614 88885614 C A DCAF4L2 Missense_Mutation p.A196S 0.23 tolerated(0.36) benign(0.424) TCGA-66-2767-01 8 92998408 92998408 C A RUNX1T1 Missense_Mutation p.S419I 0.24 tolerated(0.23) benign(0.041) TCGA-66-2767-01 8 97316381 97316381 G C PTDSS1 Missense_Mutation p.G289A 0.07 tolerated(1) possibly_damaging(0.831) TCGA-66-2767-01 8 97321823 97321823 G A PTDSS1 Missense_Mutation p.R349H 0.05 deleterious(0) probably_damaging(0.985) TCGA-66-2767-01 8 99961829 99961829 G C OSR2 Missense_Mutation p.D217H 0.28 deleterious(0) probably_damaging(1) TCGA-66-2767-01 9 107513369 107513369 G C NIPSNAP3A Missense_Mutation p.A65P 0.08 deleterious(0.03) benign(0.169) TCGA-66-2767-01 9 112172595 112172595 C T PTPN3 Missense_Mutation p.G472S 0.09 tolerated(0.27) probably_damaging(0.948) TCGA-66-2767-01 9 113220768 113220768 G T SVEP1 Missense_Mutation p.H1187N 0.30 benign(0.044) TCGA-66-2767-01 9 119204776 119204776 G A ASTN2 Missense_Mutation p.T1134I 0.07 tolerated(0.22) unknown(0) TCGA-66-2767-01 9 120475354 120475354 G T TLR4 Silent p.V316V 0.04 TCGA-66-2767-01 9 131396538 131396538 G A WDR34 Missense_Mutation p.R447W 0.07 deleterious(0) probably_damaging(1) TCGA-66-2767-01 9 137655544 137655544 C T COL5A1 Silent p.D665D 0.07 TCGA-66-2767-01 9 15920371 15920371 A G CCDC171 Missense_Mutation p.K1235R 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-66-2767-01 9 20717842 20717842 A T FOCAD Missense_Mutation p.E36V 0.38 tolerated(0.07) possibly_damaging(0.545) TCGA-66-2767-01 9 77676368 77676368 T A NMRK1 3'UTR 0.39 TCGA-66-2767-01 9 84608130 84608130 G T SPATA31D1 Silent p.L915L 0.06 TCGA-66-2767-01 9 95094618 95094618 G A CENPP Missense_Mutation p.E92K 0.40 tolerated(0.12) benign(0.003) TCGA-66-2767-01 X 104464752 104464752 G T TEX13A Missense_Mutation p.D110E 0.29 tolerated(0.18) benign(0.168) TCGA-66-2767-01 X 105279114 105279114 T C SERPINA7 Silent p.L295L 0.40 TCGA-66-2767-01 X 107408661 107408662 - A COL4A6 Frame_Shift_Ins p.L1250Ffs*11 0.34 TCGA-66-2767-01 X 112022909 112022909 C A AMOT Splice_Site p.X825_splice 0.43 TCGA-66-2767-01 X 129147659 129147659 C A BCORL1 Missense_Mutation p.P304Q 0.26 unknown(0) TCGA-66-2767-01 X 135960086 135960086 C T RBMX Missense_Mutation p.G126R 0.49 tolerated(0.22) benign(0.018) TCGA-66-2767-01 X 140995307 140995307 C G MAGEC1 Missense_Mutation p.S706C 0.48 deleterious_low_confidence(0.02) possibly_damaging(0.7) TCGA-66-2767-01 X 14748527 14748527 C A GLRA2 Missense_Mutation p.P427T 0.39 deleterious(0) probably_damaging(1) TCGA-66-2767-01 X 23410788 23410788 A T PTCHD1 Missense_Mutation p.T385S 0.40 deleterious(0.02) probably_damaging(0.996) TCGA-66-2767-01 X 37527655 37527655 C G LANCL3 Intron 0.13 TCGA-66-2767-01 X 48849876 48849876 G T GRIPAP1 Missense_Mutation p.Q141K 0.23 possibly_damaging(0.793) TCGA-66-2767-01 X 53642764 53642764 C T HUWE1 Missense_Mutation p.D664N 0.38 probably_damaging(1) TCGA-66-2767-01 X 6451751 6451751 T A VCX3A 3'UTR 0.23 TCGA-66-2767-01 X 65242668 65242668 G T VSIG4 Intron 0.42 TCGA-66-2767-01 X 77267092 77267092 C G ATP7A Missense_Mutation p.S698C 0.05 deleterious(0.02) possibly_damaging(0.572) TCGA-66-2767-01 X 84310876 84310876 G A APOOL Silent p.P113P 0.63 TCGA-66-2767-01 Y 8657327 8657327 T C TTTY11 RNA 0.38 TCGA-66-2769-01 10 101604142 101604142 A - ABCC2 Frame_Shift_Del p.N1303Tfs*49 0.10 TCGA-66-2769-01 10 104156750 104156750 C T NFKB2 Silent p.G111G 0.25 TCGA-66-2769-01 10 104176591 104176591 G T PSD Missense_Mutation p.P69T 0.17 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-66-2769-01 10 118355773 118355773 C G PNLIPRP1 Missense_Mutation p.S171R 0.06 deleterious(0) probably_damaging(0.998) TCGA-66-2769-01 10 118440728 118440728 A G HSPA12A Missense_Mutation p.V321A 0.11 deleterious(0.01) possibly_damaging(0.675) TCGA-66-2769-01 10 124813230 124813230 T C ACADSB Silent p.A416A 0.09 TCGA-66-2769-01 10 129902953 129902953 C A MKI67 Missense_Mutation p.G2384V 0.31 tolerated(0.27) benign(0.249) TCGA-66-2769-01 10 134219733 134219733 G A PWWP2B Missense_Mutation p.V577M 0.05 tolerated(0.31) benign(0.231) TCGA-66-2769-01 10 24508609 24508609 G A KIAA1217 Missense_Mutation p.R42K 0.21 tolerated(0.15) probably_damaging(0.99) TCGA-66-2769-01 10 24889804 24889804 T C ARHGAP21 Missense_Mutation p.H968R 0.16 tolerated(0.08) benign(0.135) TCGA-66-2769-01 10 32308785 32308785 C T KIF5B Splice_Site p.X769_splice 0.12 TCGA-66-2769-01 10 33502338 33502338 C T NRP1 Missense_Mutation p.M530I 0.12 tolerated(0.52) benign(0.028) TCGA-66-2769-01 10 49420152 49420152 G C FRMPD2 Missense_Mutation p.Q486E 0.12 tolerated(0.23) possibly_damaging(0.574) TCGA-66-2769-01 10 62023627 62023627 A C ANK3 Missense_Mutation p.L222R 0.15 probably_damaging(1) TCGA-66-2769-01 10 75552490 75552490 G A ZSWIM8 Silent p.A731A 0.26 TCGA-66-2769-01 10 81072428 81072428 G A ZMIZ1 Silent p.E1042E 0.11 TCGA-66-2769-01 10 88703305 88703305 G C MMRN2 Missense_Mutation p.I412M 0.08 deleterious(0.01) possibly_damaging(0.81) TCGA-66-2769-01 10 97959872 97959872 C A BLNK Missense_Mutation p.D352Y 0.10 deleterious(0.04) possibly_damaging(0.512) TCGA-66-2769-01 10 98307702 98307702 G A TM9SF3 Missense_Mutation p.T335M 0.11 deleterious(0.01) possibly_damaging(0.855) TCGA-66-2769-01 10 98743175 98743175 T A C10orf12 Missense_Mutation p.H676Q 0.12 deleterious(0.04) benign(0.005) TCGA-66-2769-01 11 102100544 102100544 T G YAP1 Missense_Mutation p.M463R 0.15 deleterious(0) possibly_damaging(0.756) TCGA-66-2769-01 11 119027162 119027162 G A ABCG4 Silent p.K270K 0.16 TCGA-66-2769-01 11 119053029 119053029 G C NLRX1 Missense_Mutation p.E861Q 0.15 tolerated(0.25) benign(0.004) TCGA-66-2769-01 11 119291097 119291097 C G THY1 Splice_Site p.X13_splice 0.16 TCGA-66-2769-01 11 123887114 123887114 T C OR10G4 Missense_Mutation p.L278P 0.09 deleterious(0) probably_damaging(0.981) TCGA-66-2769-01 11 123909337 123909337 G A OR10G7 Silent p.A124A 0.25 TCGA-66-2769-01 11 123909338 123909338 G T OR10G7 Missense_Mutation p.A124D 0.25 deleterious(0) probably_damaging(0.982) TCGA-66-2769-01 11 124120941 124120941 G C OR8G1 Missense_Mutation p.L173F 0.11 deleterious_low_confidence(0.02) benign(0.005) TCGA-66-2769-01 11 125301132 125301132 G C PKNOX2 Missense_Mutation p.M421I 0.10 deleterious_low_confidence(0.03) benign(0.262) TCGA-66-2769-01 11 134179567 134179567 A C GLB1L3 Missense_Mutation p.N337H 0.19 deleterious(0) probably_damaging(1) TCGA-66-2769-01 11 19955279 19955279 G C NAV2 Missense_Mutation p.D520H 0.11 tolerated(0.06) benign(0.395) TCGA-66-2769-01 11 21592312 21592312 T C NELL1 Silent p.D661D 0.07 TCGA-66-2769-01 11 218911 218911 A T SIRT3 Missense_Mutation p.V367D 0.10 tolerated(0.55) benign(0.004) TCGA-66-2769-01 11 5275711 5275711 G A HBG2 Silent p.F42F 0.13 TCGA-66-2769-01 11 55735800 55735800 T C OR10AG1 Missense_Mutation p.Q47R 0.23 deleterious(0.03) benign(0.101) TCGA-66-2769-01 11 56143502 56143502 G T OR8U1 Missense_Mutation p.V135L 0.19 tolerated(0.71) benign(0.002) TCGA-66-2769-01 11 58675947 58675947 C T AP001652.1 3'UTR 0.12 TCGA-66-2769-01 11 62415494 62415494 C T INTS5 Silent p.K686K 0.14 TCGA-66-2769-01 11 64591970 64591970 G T CDC42BPG Missense_Mutation p.S1544Y 0.12 deleterious_low_confidence(0) unknown(0) TCGA-66-2769-01 11 6477810 6477810 C A TRIM3 Missense_Mutation p.K382N 0.24 tolerated(0.05) probably_damaging(0.957) TCGA-66-2769-01 11 65270502 65270502 A G MALAT1 RNA 0.11 TCGA-66-2769-01 11 65631128 65631128 G A MUS81 Silent p.T299T 0.09 TCGA-66-2769-01 11 66039947 66039947 C G RAB1B Intron 0.27 TCGA-66-2769-01 11 6913539 6913539 T C OR2D2 Missense_Mutation p.N65D 0.10 deleterious(0.01) possibly_damaging(0.756) TCGA-66-2769-01 11 71193964 71193964 A G NADSYN1 Missense_Mutation p.D407G 0.14 deleterious(0.01) benign(0.014) TCGA-66-2769-01 11 71952323 71952323 C A PHOX2A Missense_Mutation p.K76N 0.12 deleterious(0) benign(0.094) TCGA-66-2769-01 11 760201 760201 G C TALDO1 Missense_Mutation p.D137H 0.08 tolerated(0.06) possibly_damaging(0.502) TCGA-66-2769-01 11 76891488 76891488 C T MYO7A Silent p.S885S 0.09 TCGA-66-2769-01 11 92085336 92085336 C A FAT3 Missense_Mutation p.L20I 0.12 benign(0.001) TCGA-66-2769-01 11 93212301 93212301 G T SMCO4 Silent p.R19R 0.14 TCGA-66-2769-01 12 100466591 100466591 C A UHRF1BP1L Missense_Mutation p.V470F 0.13 deleterious(0) probably_damaging(0.999) TCGA-66-2769-01 12 100995432 100995432 A T GAS2L3 Silent p.A68A 0.12 TCGA-66-2769-01 12 105446607 105446607 T A ALDH1L2 Missense_Mutation p.N464Y 0.11 deleterious(0.01) probably_damaging(0.992) TCGA-66-2769-01 12 111057659 111057659 G C TCTN1 Missense_Mutation p.C80S 0.15 deleterious(0) probably_damaging(1) TCGA-66-2769-01 12 120884118 120884118 T G TRIAP1 Missense_Mutation p.N20H 0.12 deleterious(0.05) probably_damaging(0.941) TCGA-66-2769-01 12 122990045 122990045 A C RSRC2 3'UTR 0.16 TCGA-66-2769-01 12 125270946 125270946 C A SCARB1 Missense_Mutation p.C453F 0.12 deleterious(0.03) possibly_damaging(0.642) TCGA-66-2769-01 12 133214642 133214642 C A POLE Missense_Mutation p.R1879L 0.13 tolerated(0.21) benign(0.009) TCGA-66-2769-01 12 13716629 13716629 G T GRIN2B Missense_Mutation p.H1181Q 0.10 tolerated(0.16) probably_damaging(0.982) TCGA-66-2769-01 12 16704201 16704201 G A LMO3 Silent p.Y153Y 0.08 TCGA-66-2769-01 12 1994236 1994236 T A CACNA2D4 Nonsense_Mutation p.K359* 0.05 TCGA-66-2769-01 12 21448550 21448550 T C SLCO1A2 Missense_Mutation p.I418V 0.20 tolerated(0.08) benign(0.009) TCGA-66-2769-01 12 22012565 22012565 G C ABCC9 Missense_Mutation p.I820M 0.08 deleterious(0) probably_damaging(0.987) TCGA-66-2769-01 12 22625701 22625701 A G C2CD5 Missense_Mutation p.L695P 0.08 deleterious(0) benign(0.004) TCGA-66-2769-01 12 25378631 25378631 T A KRAS Nonsense_Mutation p.R123* 0.08 TCGA-66-2769-01 12 27127131 27127131 G C TM7SF3 Missense_Mutation p.L494V 0.08 deleterious(0.02) benign(0.37) TCGA-66-2769-01 12 2977798 2977798 C G FOXM1 Missense_Mutation p.L259F 0.05 deleterious(0) probably_damaging(1) TCGA-66-2769-01 12 4461796 4461796 C A C12orf5 Missense_Mutation p.T251K 0.06 tolerated(0.48) benign(0.007) TCGA-66-2769-01 12 46322300 46322300 G A SCAF11 Missense_Mutation p.A395V 0.04 deleterious(0.04) benign(0.035) TCGA-66-2769-01 12 4708214 4708214 T A DYRK4 Missense_Mutation p.M194K 0.06 deleterious(0) possibly_damaging(0.794) TCGA-66-2769-01 12 4872553 4872553 A G GALNT8 Silent p.G498G 0.06 TCGA-66-2769-01 12 50186731 50186731 C G NCKAP5L Missense_Mutation p.G1127R 0.15 deleterious(0) probably_damaging(1) TCGA-66-2769-01 12 5154352 5154352 C A KCNA5 Missense_Mutation p.P347T 0.07 deleterious(0) probably_damaging(1) TCGA-66-2769-01 12 52818288 52818288 C G KRT75 3'UTR 0.22 TCGA-66-2769-01 12 52862975 52862975 G A KRT6C Silent p.G522G 0.17 TCGA-66-2769-01 12 54966954 54966954 T C PDE1B Missense_Mutation p.L253P 0.30 deleterious(0) benign(0.028) TCGA-66-2769-01 12 56334429 56334435 GCGGTGG - DGKA Frame_Shift_Del p.V315Mfs*42 0.22 TCGA-66-2769-01 12 6061028 6061028 C A VWF Missense_Mutation p.G2713C 0.09 deleterious(0.01) probably_damaging(0.979) TCGA-66-2769-01 12 62688081 62688081 C G USP15 Missense_Mutation p.L71V 0.11 deleterious(0) benign(0.27) TCGA-66-2769-01 12 66826337 66826337 T A GRIP1 Missense_Mutation p.T535S 0.06 deleterious(0.02) benign(0.361) TCGA-66-2769-01 12 6859070 6859070 C T MLF2 Missense_Mutation p.R168Q 0.10 deleterious(0.05) benign(0.074) TCGA-66-2769-01 12 7045068 7045068 C T ATN1 Missense_Mutation p.P213L 0.06 benign(0.026) TCGA-66-2769-01 12 72956807 72956807 C T TRHDE Missense_Mutation p.L632F 0.14 tolerated(0.73) benign(0.002) TCGA-66-2769-01 12 78582039 78582039 T A NAV3 Silent p.S1912S 0.09 TCGA-66-2769-01 12 78582040 78582040 C G NAV3 Missense_Mutation p.Q1913E 0.09 deleterious(0.04) benign(0.039) TCGA-66-2769-01 12 85417172 85417172 C T TSPAN19 Missense_Mutation p.V91I 0.32 tolerated(0.41) benign(0.007) TCGA-66-2769-01 13 46276567 46276567 T C SPERT Silent p.L14L 0.11 TCGA-66-2769-01 13 52548933 52548933 C T ATP7B Silent p.Q141Q 0.05 TCGA-66-2769-01 14 100187586 100187586 G T CYP46A1 Nonsense_Mutation p.E331* 0.07 TCGA-66-2769-01 14 105412142 105412142 C T AHNAK2 Missense_Mutation p.V3216I 0.26 benign(0.05) TCGA-66-2769-01 14 106109862 106109862 C A IGHG2 Missense_Mutation p.G220V 0.04 deleterious(0) probably_damaging(0.999) TCGA-66-2769-01 14 106237658 106237658 A T IGHG3 Missense_Mutation p.V29D 0.12 deleterious(0) probably_damaging(0.989) TCGA-66-2769-01 14 20216080 20216080 T C OR4Q3 Missense_Mutation p.I165T 0.08 tolerated(0.17) possibly_damaging(0.501) TCGA-66-2769-01 14 22205150 22205150 G T TRAV4 Missense_Mutation p.V72F 0.14 deleterious(0.01) benign(0.082) TCGA-66-2769-01 14 32561037 32561037 G A ARHGAP5 Missense_Mutation p.E388K 0.17 tolerated(0.19) benign(0.101) TCGA-66-2769-01 14 36768304 36768304 G C MBIP Silent p.T340T 0.11 TCGA-66-2769-01 14 45564617 45564617 G T PRPF39 Nonsense_Mutation p.E59* 0.13 TCGA-66-2769-01 14 56107114 56107114 T C KTN1 Missense_Mutation p.L646S 0.14 tolerated(0.62) benign(0.006) TCGA-66-2769-01 14 62193523 62193523 C G HIF1A Missense_Mutation p.S210C 0.19 deleterious(0) probably_damaging(0.997) TCGA-66-2769-01 14 64518330 64518330 A G SYNE2 Missense_Mutation p.I2567V 0.12 benign(0.005) TCGA-66-2769-01 14 64634228 64634228 T C SYNE2 Silent p.I5592I 0.12 TCGA-66-2769-01 14 91739962 91739962 G C CCDC88C Missense_Mutation p.D1698E 0.12 tolerated(0.43) benign(0.02) TCGA-66-2769-01 15 101853661 101853661 G A PCSK6 Silent p.H872H 0.06 TCGA-66-2769-01 15 23932117 23932117 G T NDN Missense_Mutation p.P83Q 0.37 tolerated(0.89) benign(0.001) TCGA-66-2769-01 15 25472283 25472283 C A SNORD115-31 RNA 0.22 TCGA-66-2769-01 15 25939990 25939990 G T ATP10A Missense_Mutation p.L1022I 0.32 deleterious(0.01) benign(0.169) TCGA-66-2769-01 15 34147023 34147025 CTT - RYR3 In_Frame_Del p.F4642del 0.16 TCGA-66-2769-01 15 40510758 40510758 T C BUB1B Silent p.I984I 0.11 TCGA-66-2769-01 15 40582282 40582282 A G PLCB2 Silent p.L1071L 0.20 TCGA-66-2769-01 15 41387816 41387816 T C INO80 Missense_Mutation p.S122G 0.10 tolerated(0.3) benign(0.05) TCGA-66-2769-01 15 44194383 44194383 T G FRMD5 Missense_Mutation p.H210P 0.13 deleterious(0) probably_damaging(1) TCGA-66-2769-01 15 48543960 48543960 G C SLC12A1 Missense_Mutation p.K645N 0.10 tolerated(0.07) benign(0.1) TCGA-66-2769-01 15 63029166 63029166 G A TLN2 Missense_Mutation p.A1150T 0.15 tolerated(0.23) benign(0.007) TCGA-66-2769-01 15 65684616 65684624 CAGAGATCT - IGDCC4 In_Frame_Del p.Q657_G660delinsR 0.12 TCGA-66-2769-01 15 72862617 72862617 C G ARIH1 Missense_Mutation p.L376V 0.12 deleterious(0.01) probably_damaging(0.973) TCGA-66-2769-01 15 74173808 74173808 C A TBC1D21 Silent p.A43A 0.17 TCGA-66-2769-01 15 74427072 74427072 G A ISLR2 Silent p.P659P 0.12 TCGA-66-2769-01 15 75111526 75111526 C G LMAN1L Missense_Mutation p.P211A 0.08 tolerated(0.39) benign(0.246) TCGA-66-2769-01 15 85224009 85224009 G C SEC11A Missense_Mutation p.D122E 0.07 deleterious(0) probably_damaging(0.996) TCGA-66-2769-01 15 99874251 99874251 G A LRRC28 Nonsense_Mutation p.W170* 0.25 TCGA-66-2769-01 16 15788096 15788096 C G NDE1 Missense_Mutation p.L260V 0.17 deleterious(0) probably_damaging(0.993) TCGA-66-2769-01 16 1642250 1642250 C A IFT140 Missense_Mutation p.K187N 0.11 tolerated(0.07) benign(0.003) TCGA-66-2769-01 16 3014864 3014864 G C KREMEN2 Silent p.L33L 0.09 TCGA-66-2769-01 16 31429654 31429654 C G ITGAD Nonsense_Mutation p.Y883* 0.11 TCGA-66-2769-01 16 50328593 50328593 C G ADCY7 Missense_Mutation p.S293R 0.17 deleterious(0) probably_damaging(0.962) TCGA-66-2769-01 16 5057474 5057474 G C SEC14L5 Missense_Mutation p.G520A 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-66-2769-01 16 57238474 57238474 A G RSPRY1 5'UTR 0.15 TCGA-66-2769-01 16 57828921 57828921 A C KIFC3 Missense_Mutation p.L102R 0.15 deleterious(0) probably_damaging(0.955) TCGA-66-2769-01 16 58150847 58150847 A C C16orf80 Missense_Mutation p.N31K 0.18 tolerated(0.13) benign(0.213) TCGA-66-2769-01 16 67043095 67043095 G T CES4A 3'UTR 0.17 TCGA-66-2769-01 16 68321710 68321710 C G SLC7A6 Missense_Mutation p.F195L 0.18 deleterious(0) possibly_damaging(0.654) TCGA-66-2769-01 16 75563469 75563469 C T CHST5 Missense_Mutation p.V272M 0.13 deleterious(0.02) probably_damaging(0.997) TCGA-66-2769-01 16 81062393 81062393 A C CENPN Intron 0.36 TCGA-66-2769-01 16 82069287 82069287 G A HSD17B2 Silent p.L86L 0.14 TCGA-66-2769-01 16 88552354 88552354 C G ZFPM1 Silent p.L16L 0.11 TCGA-66-2769-01 16 90162301 90162301 C T TUBB8P7 RNA 0.10 TCGA-66-2769-01 17 10401171 10401171 A G MYH1 Silent p.C1415C 0.28 TCGA-66-2769-01 17 11701002 11701002 T A DNAH9 Missense_Mutation p.V2771E 0.16 possibly_damaging(0.821) TCGA-66-2769-01 17 1635744 1635744 T G WDR81 Missense_Mutation p.F1428C 0.09 deleterious(0) probably_damaging(1) TCGA-66-2769-01 17 18030106 18030106 C T MYO15A Missense_Mutation p.H1290Y 0.13 unknown(0) TCGA-66-2769-01 17 28525413 28525413 G T SLC6A4 3'UTR 0.17 TCGA-66-2769-01 17 28530214 28530214 G A SLC6A4 Silent p.I598I 0.04 TCGA-66-2769-01 17 37111152 37111152 G A FBXO47 Missense_Mutation p.P155L 0.22 tolerated(0.14) benign(0.019) TCGA-66-2769-01 17 38420910 38420910 G A WIPF2 Missense_Mutation p.R161Q 0.11 tolerated(0.09) possibly_damaging(0.659) TCGA-66-2769-01 17 39967462 39967462 G T LEPREL4 Silent p.A179A 0.32 TCGA-66-2769-01 17 39967463 39967463 G A LEPREL4 Missense_Mutation p.A179V 0.32 tolerated(0.28) benign(0.017) TCGA-66-2769-01 17 42090413 42090413 G A TMEM101 Silent p.T143T 0.20 TCGA-66-2769-01 17 46700366 46700366 C G HOXB9 Missense_Mutation p.E217Q 0.28 deleterious(0) probably_damaging(0.987) TCGA-66-2769-01 17 56661940 56661940 C G TEX14 Missense_Mutation p.R1037T 0.18 tolerated(0.06) benign(0.185) TCGA-66-2769-01 17 57758806 57758806 C T CLTC Silent p.F1072F 0.11 TCGA-66-2769-01 17 58529390 58529390 T C APPBP2 Missense_Mutation p.H452R 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-66-2769-01 17 59534945 59534945 G C TBX4 Missense_Mutation p.K78N 0.11 tolerated(0.16) probably_damaging(0.977) TCGA-66-2769-01 18 13884680 13884680 T A MC2R Missense_Mutation p.S280C 0.11 deleterious(0) possibly_damaging(0.792) TCGA-66-2769-01 18 29171819 29171819 C T TTR 5'UTR 0.11 TCGA-66-2769-01 18 34839195 34839195 G T CELF4 Missense_Mutation p.L428M 0.23 deleterious(0) possibly_damaging(0.875) TCGA-66-2769-01 18 42281630 42281630 A T SETBP1 Missense_Mutation p.I107F 0.14 deleterious(0) probably_damaging(0.994) TCGA-66-2769-01 18 44561189 44561189 G A TCEB3B Silent p.R149R 0.12 TCGA-66-2769-01 18 48703637 48703637 T G MEX3C Missense_Mutation p.Q355P 0.07 deleterious(0) probably_damaging(0.968) TCGA-66-2769-01 18 61064318 61064318 A T VPS4B Missense_Mutation p.D347E 0.10 tolerated(0.14) probably_damaging(0.99) TCGA-66-2769-01 19 15272431 15272431 T C NOTCH3 Missense_Mutation p.H2003R 0.35 deleterious(0) probably_damaging(0.997) TCGA-66-2769-01 19 15299800 15299800 C G NOTCH3 Missense_Mutation p.G460R 0.27 deleterious(0) probably_damaging(0.986) TCGA-66-2769-01 19 15350057 15350057 T A BRD4 Missense_Mutation p.M1199L 0.16 benign(0.008) TCGA-66-2769-01 19 15658996 15658997 TC - CYP4F22 Frame_Shift_Del p.R407Pfs*36 0.19 TCGA-66-2769-01 19 19312483 19312483 C A RFXANK Silent p.I246I 0.17 TCGA-66-2769-01 19 21720839 21720839 G C ZNF429 Missense_Mutation p.G662R 0.08 deleterious_low_confidence(0.02) benign(0) TCGA-66-2769-01 19 22836815 22836816 - A ZNF492 Frame_Shift_Ins p.V44Sfs*29 0.22 TCGA-66-2769-01 19 22939039 22939039 G C ZNF99 3'Flank 0.09 TCGA-66-2769-01 19 34949688 34949688 A T UBA2 Missense_Mutation p.K420N 0.13 tolerated(0.15) benign(0.067) TCGA-66-2769-01 19 39866515 39866515 G T SAMD4B Missense_Mutation p.G298V 0.08 deleterious(0.02) probably_damaging(0.949) TCGA-66-2769-01 19 39899348 39899348 C T ZFP36 3'UTR 0.08 TCGA-66-2769-01 19 39977125 39977125 A T TIMM50 Missense_Mutation p.H332L 0.18 deleterious(0.03) benign(0.39) TCGA-66-2769-01 19 44352378 44352378 C T ZNF283 Missense_Mutation p.P542L 0.11 deleterious(0) benign(0.373) TCGA-66-2769-01 19 44418249 44418249 C T ZNF45 Missense_Mutation p.E447K 0.18 tolerated(0.13) benign(0.253) TCGA-66-2769-01 19 45496145 45496145 A T CLPTM1 Missense_Mutation p.K667I 0.24 deleterious_low_confidence(0) unknown(0) TCGA-66-2769-01 19 50510942 50510942 C A VRK3 Missense_Mutation p.R144L 0.16 deleterious(0.01) possibly_damaging(0.574) TCGA-66-2769-01 19 53015481 53015481 A T ZNF578 3'Flank 0.11 TCGA-66-2769-01 19 54140183 54140183 G T DPRX Missense_Mutation p.A173S 0.21 tolerated(0.92) benign(0.002) TCGA-66-2769-01 19 55098750 55098751 - G LILRA2 Frame_Shift_Ins p.I465Dfs*5 0.31 TCGA-66-2769-01 19 55146198 55146198 C A LILRB1 Silent p.G490G 0.25 TCGA-66-2769-01 19 55489156 55489156 A C NLRP2 Missense_Mutation p.D121A 0.13 tolerated(0.25) benign(0.003) TCGA-66-2769-01 19 5933440 5933440 G A RANBP3 Nonsense_Mutation p.Q153* 0.10 TCGA-66-2769-01 19 7614886 7614886 C T PNPLA6 Missense_Mutation p.P577S 0.15 deleterious(0.04) benign(0.389) TCGA-66-2769-01 19 8601862 8601862 G C MYO1F Silent p.T590T 0.19 TCGA-66-2769-01 19 8982248 8982248 G C MUC16 Missense_Mutation p.I14009M 0.32 possibly_damaging(0.766) TCGA-66-2769-01 19 9048523 9048523 A T MUC16 Silent p.P11036P 0.33 TCGA-66-2769-01 19 9064273 9064273 G A MUC16 Missense_Mutation p.P7725S 0.33 unknown(0) TCGA-66-2769-01 19 9072034 9072034 G A MUC16 Missense_Mutation p.H5138Y 0.08 unknown(0) TCGA-66-2769-01 1 109867699 109867699 G T SORT1 Missense_Mutation p.D552E 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-66-2769-01 1 12884857 12884857 G T PRAMEF11 Nonsense_Mutation p.C418* 0.21 TCGA-66-2769-01 1 145415533 145415533 A T HFE2 Missense_Mutation p.N118Y 0.20 deleterious(0) probably_damaging(0.989) TCGA-66-2769-01 1 157497478 157497478 C G FCRL5 Missense_Mutation p.G630A 0.10 deleterious(0.04) probably_damaging(0.979) TCGA-66-2769-01 1 158259729 158259729 T A CD1C 5'UTR 0.24 TCGA-66-2769-01 1 159033384 159033384 C G AIM2 Missense_Mutation p.E299D 0.10 tolerated(0.19) benign(0.024) TCGA-66-2769-01 1 159038488 159038488 T C AIM2 Missense_Mutation p.D89G 0.09 tolerated(0.34) benign(0.307) TCGA-66-2769-01 1 159779337 159779337 C T FCRL6 Silent p.N250N 0.20 TCGA-66-2769-01 1 161047495 161047495 C G PVRL4 Missense_Mutation p.E160Q 0.22 tolerated(0.27) possibly_damaging(0.893) TCGA-66-2769-01 1 161681018 161681018 C A FCRLA Missense_Mutation p.P108T 0.29 deleterious(0.04) probably_damaging(0.938) TCGA-66-2769-01 1 16356267 16356267 C T CLCNKA Silent p.A423A 0.23 TCGA-66-2769-01 1 169351414 169351414 A G BLZF1 Silent p.K304K 0.04 TCGA-66-2769-01 1 170521415 170521415 G A GORAB Missense_Mutation p.E333K 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.547) TCGA-66-2769-01 1 173454637 173454637 A T PRDX6 Silent p.T130T 0.19 TCGA-66-2769-01 1 175372602 175372602 C G TNR Missense_Mutation p.G217A 0.21 deleterious(0) probably_damaging(1) TCGA-66-2769-01 1 179012955 179012955 G A FAM20B 5'UTR 0.07 TCGA-66-2769-01 1 182025610 182025610 G T ZNF648 Silent p.A512A 0.08 TCGA-66-2769-01 1 183849773 183849773 C T RGL1 Missense_Mutation p.A185V 0.23 deleterious(0.05) probably_damaging(0.983) TCGA-66-2769-01 1 186034501 186034501 A G HMCN1 Missense_Mutation p.T2549A 0.23 benign(0.002) TCGA-66-2769-01 1 186113770 186113770 A G HMCN1 Missense_Mutation p.Y4734C 0.04 possibly_damaging(0.797) TCGA-66-2769-01 1 186135424 186135424 G C HMCN1 Missense_Mutation p.R5143T 0.22 benign(0.01) TCGA-66-2769-01 1 197059370 197059370 G C ASPM Missense_Mutation p.T3262R 0.08 deleterious(0.04) possibly_damaging(0.805) TCGA-66-2769-01 1 200017503 200017503 C A NR5A2 Missense_Mutation p.L223I 0.24 tolerated(0.17) benign(0.005) TCGA-66-2769-01 1 201021734 201021734 G T CACNA1S Silent p.R1302R 0.22 TCGA-66-2769-01 1 215820989 215820989 C T USH2A Missense_Mutation p.G4889E 0.27 probably_damaging(0.999) TCGA-66-2769-01 1 216062152 216062152 C T USH2A Silent p.E2613E 0.12 TCGA-66-2769-01 1 237659997 237659997 T A RYR2 Missense_Mutation p.N716K 0.08 probably_damaging(0.999) TCGA-66-2769-01 1 240976950 240976950 G A RGS7 Silent p.S308S 0.08 TCGA-66-2769-01 1 24201601 24201601 G T CNR2 Silent p.L169L 0.24 TCGA-66-2769-01 1 243493952 243493952 G A SDCCAG8 Missense_Mutation p.M393I 0.13 tolerated(0.69) benign(0.003) TCGA-66-2769-01 1 243493994 243493994 G A SDCCAG8 Silent p.K407K 0.12 TCGA-66-2769-01 1 248616917 248616917 A G OR2T2 Silent p.K273K 0.13 TCGA-66-2769-01 1 248685373 248685373 G A OR2G6 Silent p.A142A 0.20 TCGA-66-2769-01 1 2489856 2489856 G T TNFRSF14 Missense_Mutation p.A85S 0.07 tolerated(0.06) possibly_damaging(0.857) TCGA-66-2769-01 1 249212654 249212654 G C PGBD2 3'UTR 0.15 TCGA-66-2769-01 1 28929898 28929898 C G TAF12 3'UTR 0.18 TCGA-66-2769-01 1 32790114 32790114 C G HDAC1 Silent p.G105G 0.08 TCGA-66-2769-01 1 38433753 38433753 G C SF3A3 Missense_Mutation p.H445Q 0.11 deleterious(0) probably_damaging(1) TCGA-66-2769-01 1 47264765 47264765 C T CYP4B1 Silent p.S4S 0.25 TCGA-66-2769-01 1 55073687 55073687 A G ACOT11 Silent p.G525G 0.28 TCGA-66-2769-01 1 6172312 6172312 C A CHD5 Missense_Mutation p.E1676D 0.10 tolerated(0.15) benign(0.003) TCGA-66-2769-01 1 64644348 64644348 G T ROR1 Missense_Mutation p.G875V 0.08 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-66-2769-01 1 64644349 64644349 A G ROR1 Silent p.G875G 0.08 TCGA-66-2769-01 1 65851528 65851528 T A DNAJC6 Missense_Mutation p.C312S 0.24 deleterious(0) probably_damaging(0.998) TCGA-66-2769-01 1 75172095 75172095 A G CRYZ Missense_Mutation p.I292T 0.24 tolerated(0.6) benign(0.001) TCGA-66-2769-01 1 7723880 7723880 C A CAMTA1 Missense_Mutation p.P425T 0.13 tolerated(0.54) benign(0.08) TCGA-66-2769-01 1 8424121 8424121 C T RERE Missense_Mutation p.G579S 0.16 probably_damaging(0.999) TCGA-66-2769-01 1 87046040 87046040 G C CLCA4 3'UTR 0.12 TCGA-66-2769-01 1 89885845 89885845 C G GBP1P1 RNA 0.10 TCGA-66-2769-01 20 20051495 20051495 C T C20orf26 Intron 0.09 TCGA-66-2769-01 20 29623151 29623151 C A FRG1B 5'UTR 0.10 TCGA-66-2769-01 20 33573900 33573900 C T MYH7B Intron 0.26 TCGA-66-2769-01 20 40739074 40739074 A G PTPRT Silent p.P1051P 0.12 TCGA-66-2769-01 20 43243223 43243223 C G PKIG Missense_Mutation p.S9W 0.14 deleterious(0) probably_damaging(0.988) TCGA-66-2769-01 20 45129896 45129896 G C ZNF334 3'UTR 0.13 TCGA-66-2769-01 20 55059235 55059235 T A RTFDC1 Missense_Mutation p.V156D 0.10 deleterious(0) possibly_damaging(0.821) TCGA-66-2769-01 20 61939365 61939365 T A COL20A1 Missense_Mutation p.L233Q 0.23 deleterious(0) probably_damaging(1) TCGA-66-2769-01 20 62195617 62195617 C T HELZ2 Missense_Mutation p.A1520T 0.17 tolerated(0.43) benign(0.042) TCGA-66-2769-01 21 15746161 15746161 T C HSPA13 Missense_Mutation p.E398G 0.10 deleterious(0) probably_damaging(0.999) TCGA-66-2769-01 21 17962592 17962592 T G MIR125B2 RNA 0.71 TCGA-66-2769-01 21 19165769 19165769 C G C21orf91 Missense_Mutation p.R286P 0.04 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-66-2769-01 21 33370879 33370879 T C HUNK Silent p.D509D 0.14 TCGA-66-2769-01 21 45710912 45710912 G T AIRE Intron 0.23 TCGA-66-2769-01 21 47542407 47542407 C A COL6A2 Intron 0.29 TCGA-66-2769-01 22 17578707 17578707 T C IL17RA Missense_Mutation p.W62R 0.12 deleterious(0) probably_damaging(1) TCGA-66-2769-01 22 19076926 19076926 C A DGCR2 Missense_Mutation p.G53C 0.21 deleterious_low_confidence(0) probably_damaging(1) TCGA-66-2769-01 22 21800352 21800352 G A HIC2 Missense_Mutation p.E390K 0.09 deleterious(0.02) benign(0.126) TCGA-66-2769-01 22 26299600 26299600 A G MYO18B Silent p.Q1650Q 0.20 TCGA-66-2769-01 22 35947953 35947953 G T RASD2 Missense_Mutation p.M225I 0.21 tolerated(0.19) benign(0) TCGA-66-2769-01 22 36140280 36140280 C G RBFOX2 Missense_Mutation p.G443A 0.23 benign(0.046) TCGA-66-2769-01 22 43614356 43614356 G C SCUBE1 Nonsense_Mutation p.S599* 0.13 TCGA-66-2769-01 22 50925258 50925258 T A MIOX 5'UTR 0.16 TCGA-66-2769-01 2 11809710 11809710 C A NTSR2 Silent p.T182T 0.29 TCGA-66-2769-01 2 149227424 149227424 C G MBD5 Missense_Mutation p.Q638E 0.14 deleterious(0.01) benign(0.092) TCGA-66-2769-01 2 162873304 162873304 A G DPP4 Missense_Mutation p.L514P 0.22 tolerated(0.08) possibly_damaging(0.812) TCGA-66-2769-01 2 167330331 167330331 G A SCN7A Missense_Mutation p.P141S 0.11 tolerated(0.1) benign(0.064) TCGA-66-2769-01 2 179397656 179397656 G C TTN Missense_Mutation p.F34562L 0.13 TCGA-66-2769-01 2 179397693 179397693 T C TTN Missense_Mutation p.Q34550R 0.13 TCGA-66-2769-01 2 179404521 179404521 G T TTN Missense_Mutation p.H32757Q 0.15 TCGA-66-2769-01 2 179438182 179438182 G T TTN Missense_Mutation p.P24226H 0.23 TCGA-66-2769-01 2 179611790 179611790 C A TTN Intron 0.11 TCGA-66-2769-01 2 179611791 179611791 C A TTN Intron 0.11 TCGA-66-2769-01 2 185802573 185802573 G T ZNF804A Missense_Mutation p.G817V 0.24 deleterious(0.02) benign(0.052) TCGA-66-2769-01 2 190585405 190585405 G A ANKAR Missense_Mutation p.V843I 0.09 deleterious(0.03) benign(0.021) TCGA-66-2769-01 2 207176095 207176095 G T ZDBF2 Missense_Mutation p.E2281D 0.16 deleterious(0.04) benign(0.217) TCGA-66-2769-01 2 210558189 210558189 A G MAP2 Missense_Mutation p.E432G 0.06 deleterious_low_confidence(0.04) benign(0.008) TCGA-66-2769-01 2 21252811 21252811 C G APOB Missense_Mutation p.D477H 0.05 possibly_damaging(0.77) TCGA-66-2769-01 2 214794857 214794857 G T SPAG16 Missense_Mutation p.W463L 0.25 deleterious(0) probably_damaging(0.996) TCGA-66-2769-01 2 219894866 219894866 C T CCDC108 Missense_Mutation p.C409Y 0.12 deleterious(0) probably_damaging(0.998) TCGA-66-2769-01 2 228135560 228135560 G C COL4A3 Silent p.V550V 0.13 TCGA-66-2769-01 2 228552892 228552892 A G SLC19A3 Missense_Mutation p.V435A 0.10 deleterious(0.02) benign(0.202) TCGA-66-2769-01 2 228884389 228884389 T A SPHKAP Missense_Mutation p.N394I 0.13 deleterious(0) probably_damaging(0.914) TCGA-66-2769-01 2 232003516 232003516 C A PSMD1 Nonsense_Mutation p.Y650* 0.14 TCGA-66-2769-01 2 232003517 232003517 G C PSMD1 Missense_Mutation p.G651R 0.13 deleterious(0) probably_damaging(0.999) TCGA-66-2769-01 2 234357781 234357781 T A DGKD Silent p.L549L 0.13 TCGA-66-2769-01 2 242021721 242021721 A C SNED1 Silent p.R1355R 0.10 TCGA-66-2769-01 2 27278832 27278832 G A AGBL5 Silent p.Q397Q 0.12 TCGA-66-2769-01 2 29366633 29366633 A G CLIP4 Missense_Mutation p.E236G 0.14 deleterious(0.02) possibly_damaging(0.806) TCGA-66-2769-01 2 85779559 85779559 G A GGCX Silent p.I473I 0.07 TCGA-66-2769-01 2 98418391 98418391 C T TMEM131 Silent p.L895L 0.23 TCGA-66-2769-01 2 99438661 99438661 G A KIAA1211L Missense_Mutation p.S692L 0.17 deleterious(0) probably_damaging(0.996) TCGA-66-2769-01 3 119452326 119452326 G T MAATS1 Missense_Mutation p.L439F 0.13 tolerated(0.25) benign(0.031) TCGA-66-2769-01 3 130287157 130287157 G A COL6A6 Missense_Mutation p.A704T 0.16 deleterious(0) probably_damaging(1) TCGA-66-2769-01 3 14562024 14562024 C A GRIP2 RNA 0.24 TCGA-66-2769-01 3 150460088 150460088 C A SIAH2 Missense_Mutation p.R272L 0.12 deleterious(0.02) probably_damaging(0.996) TCGA-66-2769-01 3 150916298 150916298 G C GPR171 Missense_Mutation p.F292L 0.15 deleterious(0) probably_damaging(0.997) TCGA-66-2769-01 3 167045841 167045841 C A ZBBX Missense_Mutation p.G251W 0.11 deleterious(0) probably_damaging(1) TCGA-66-2769-01 3 169802364 169802364 G A GPR160 Missense_Mutation p.E202K 0.04 tolerated(0.63) benign(0.019) TCGA-66-2769-01 3 171394528 171394528 T A PLD1 Missense_Mutation p.I698F 0.07 deleterious(0) probably_damaging(0.961) TCGA-66-2769-01 3 179525608 179525608 T C PEX5L Silent p.L510L 0.09 TCGA-66-2769-01 3 185155326 185155326 G T MAP3K13 Silent p.A189A 0.13 TCGA-66-2769-01 3 189590698 189590698 G C TP63 Silent p.L421L 0.10 TCGA-66-2769-01 3 197670826 197670826 T A IQCG Missense_Mutation p.E35D 0.06 tolerated_low_confidence(0.1) benign(0.004) TCGA-66-2769-01 3 33905613 33905613 A T PDCD6IP Missense_Mutation p.T751S 0.36 tolerated(0.52) benign(0.001) TCGA-66-2769-01 3 39433091 39433091 G C SLC25A38 Missense_Mutation p.V146L 0.31 deleterious(0.04) probably_damaging(0.995) TCGA-66-2769-01 3 42835676 42835676 C G HIGD1A Missense_Mutation p.A38P 0.04 deleterious(0) probably_damaging(0.956) TCGA-66-2769-01 3 50332245 50332245 G A HYAL3 Silent p.R263R 0.13 TCGA-66-2769-01 3 64518865 64518865 C G ADAMTS9 Missense_Mutation p.V1899L 0.12 tolerated(0.27) benign(0.2) TCGA-66-2769-01 3 9068629 9068629 G C SRGAP3 Missense_Mutation p.I530M 0.15 deleterious(0) probably_damaging(0.998) TCGA-66-2769-01 3 97655671 97655671 C G CRYBG3 Missense_Mutation p.I860M 0.14 tolerated(0.23) benign(0.281) TCGA-66-2769-01 4 104062983 104062983 A G CENPE Missense_Mutation p.I1796T 0.27 benign(0.021) TCGA-66-2769-01 4 119678999 119678999 T C SEC24D Missense_Mutation p.K433R 0.08 deleterious(0) benign(0.06) TCGA-66-2769-01 4 119951484 119951484 A T SYNPO2 Silent p.P518P 0.11 TCGA-66-2769-01 4 156723544 156723544 A G GUCY1B3 Missense_Mutation p.K409R 0.14 tolerated(0.33) benign(0.003) TCGA-66-2769-01 4 156831253 156831253 A T TDO2 Missense_Mutation p.N170Y 0.25 deleterious(0.01) benign(0.192) TCGA-66-2769-01 4 156860681 156860681 A T CTSO Missense_Mutation p.C132S 0.28 deleterious(0) probably_damaging(1) TCGA-66-2769-01 4 158257894 158257894 G A GRIA2 Silent p.S613S 0.12 TCGA-66-2769-01 4 162463703 162463703 G T FSTL5 Silent p.S386S 0.09 TCGA-66-2769-01 4 174309353 174309353 A T SCRG1 3'UTR 0.18 TCGA-66-2769-01 4 176561340 176561340 G T GPM6A Missense_Mutation p.N208K 0.13 tolerated(0.31) benign(0.05) TCGA-66-2769-01 4 178256957 178256957 G C NEIL3 Missense_Mutation p.D132H 0.18 deleterious(0) probably_damaging(0.937) TCGA-66-2769-01 4 178361466 178361466 T A AGA Missense_Mutation p.E81V 0.14 deleterious(0) probably_damaging(0.994) TCGA-66-2769-01 4 265353 265354 TG - ZNF732 Frame_Shift_Del p.T431Rfs*4 0.18 TCGA-66-2769-01 4 38775197 38775197 A C TLR10 Missense_Mutation p.F672C 0.16 deleterious(0) probably_damaging(0.996) TCGA-66-2769-01 4 43022403 43022403 A T GRXCR1 Silent p.S220S 0.33 TCGA-66-2769-01 4 47898563 47898563 C T NFXL1 Missense_Mutation p.G436S 0.25 deleterious(0.01) probably_damaging(1) TCGA-66-2769-01 4 5016911 5016911 T A CYTL1 Silent p.P126P 0.25 TCGA-66-2769-01 4 5624388 5624388 C G EVC2 Missense_Mutation p.G793R 0.06 tolerated(0.99) possibly_damaging(0.779) TCGA-66-2769-01 4 62598889 62598889 G T LPHN3 Missense_Mutation p.G271V 0.17 deleterious(0) probably_damaging(1) TCGA-66-2769-01 4 68497430 68497430 G C UBA6 Missense_Mutation p.P752A 0.16 tolerated(0.13) benign(0.017) TCGA-66-2769-01 4 71396854 71396854 C A AMTN Missense_Mutation p.S152R 0.28 tolerated(0.15) benign(0.001) TCGA-66-2769-01 4 71458014 71458014 T A AMBN 5'UTR 0.16 TCGA-66-2769-01 4 71522115 71522115 T C IGJ Silent p.P137P 0.16 TCGA-66-2769-01 4 73178098 73178098 C T ADAMTS3 Missense_Mutation p.D611N 0.12 deleterious(0) probably_damaging(0.998) TCGA-66-2769-01 4 79158767 79158767 A G FRAS1 Missense_Mutation p.E71G 0.07 benign(0.097) TCGA-66-2769-01 4 79763671 79763671 G T BMP2K Missense_Mutation p.R179L 0.24 deleterious(0) probably_damaging(0.999) TCGA-66-2769-01 4 870351 870351 A G GAK Missense_Mutation p.V674A 0.10 deleterious(0) possibly_damaging(0.648) TCGA-66-2769-01 4 870352 870352 C A GAK Missense_Mutation p.V674L 0.10 deleterious(0.04) benign(0.148) TCGA-66-2769-01 4 89349843 89349843 A G HERC6 Missense_Mutation p.K683E 0.30 tolerated(1) benign(0) TCGA-66-2769-01 4 91701647 91701647 G C CCSER1 Intron 0.11 TCGA-66-2769-01 5 128932315 128932315 G A ADAMTS19 Missense_Mutation p.G473D 0.11 deleterious(0) probably_damaging(1) TCGA-66-2769-01 5 133914194 133914194 C A JADE2 Silent p.S520S 0.13 TCGA-66-2769-01 5 140176942 140176942 G T PCDHA2 Intron 0.41 TCGA-66-2769-01 5 140255780 140255780 G A PCDHA12 Silent p.A241A 0.14 TCGA-66-2769-01 5 140501728 140501728 G C PCDHB4 Missense_Mutation p.D50H 0.12 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-66-2769-01 5 140754719 140754719 G C PCDHGA6 Missense_Mutation p.A357P 0.16 tolerated_low_confidence(1) benign(0.006) TCGA-66-2769-01 5 143200251 143200251 C A HMHB1 3'UTR 0.34 TCGA-66-2769-01 5 147481349 147481349 G A SPINK5 Silent p.L436L 0.34 TCGA-66-2769-01 5 175775012 175775012 G C KIAA1191 Silent p.T207T 0.17 TCGA-66-2769-01 5 176738873 176738873 G C MXD3 5'UTR 0.22 TCGA-66-2769-01 5 19571918 19571918 C T CDH18 Silent p.K341K 0.06 TCGA-66-2769-01 5 31449447 31449448 - A DROSHA Frame_Shift_Ins p.G921Vfs*23 0.20 TCGA-66-2769-01 5 33937128 33937128 G C RXFP3 Missense_Mutation p.G95R 0.19 deleterious(0.01) possibly_damaging(0.73) TCGA-66-2769-01 5 34043052 34043052 C T C1QTNF3 Missense_Mutation p.R60Q 0.10 tolerated_low_confidence(0.08) benign(0) TCGA-66-2769-01 5 34944987 34944987 G A DNAJC21 Silent p.E333E 0.08 TCGA-66-2769-01 5 38406262 38406262 C A EGFLAM Silent p.P249P 0.06 TCGA-66-2769-01 5 94024275 94024275 C G ANKRD32 Nonsense_Mutation p.S729* 0.13 TCGA-66-2769-01 6 110300367 110300367 G T GPR6 Missense_Mutation p.A18S 0.12 deleterious_low_confidence(0.04) benign(0.364) TCGA-66-2769-01 6 110448681 110448681 T A WASF1 Missense_Mutation p.S42C 0.08 deleterious(0.01) unknown(0) TCGA-66-2769-01 6 123124876 123124876 G C SMPDL3A Missense_Mutation p.L212F 0.09 deleterious(0.01) probably_damaging(1) TCGA-66-2769-01 6 132171189 132171189 G A ENPP1 Missense_Mutation p.A125T 0.24 tolerated(0.57) possibly_damaging(0.685) TCGA-66-2769-01 6 133092043 133092043 A T SLC18B1 Nonsense_Mutation p.Y430* 0.18 TCGA-66-2769-01 6 144178934 144178934 T C LTV1 Silent p.D195D 0.11 TCGA-66-2769-01 6 152683398 152683398 G A SYNE1 Silent p.S3402S 0.27 TCGA-66-2769-01 6 169642017 169642017 A T THBS2 Missense_Mutation p.L244Q 0.12 deleterious_low_confidence(0.04) benign(0.27) TCGA-66-2769-01 6 24570166 24570166 G C KIAA0319 Missense_Mutation p.D652E 0.08 deleterious(0) probably_damaging(0.968) TCGA-66-2769-01 6 24843554 24843554 A G FAM65B Missense_Mutation p.S486P 0.14 tolerated(0.16) benign(0.008) TCGA-66-2769-01 6 29571479 29571479 G C GABBR1 Silent p.V909V 0.17 TCGA-66-2769-01 6 29976217 29976217 C A ZNRD1-AS1 Intron 0.17 TCGA-66-2769-01 6 30638668 30638668 C T DHX16 Missense_Mutation p.E170K 0.10 deleterious(0.04) unknown(0) TCGA-66-2769-01 6 34953011 34953011 A T ANKS1A Nonsense_Mutation p.K389* 0.25 TCGA-66-2769-01 6 35438472 35438472 A G RPL10A Missense_Mutation p.N200S 0.16 deleterious(0.04) possibly_damaging(0.576) TCGA-66-2769-01 6 39554057 39554057 A C KIF6 Missense_Mutation p.L324V 0.11 tolerated(1) benign(0.009) TCGA-66-2769-01 6 46846012 46846012 C G GPR116 Missense_Mutation p.L389F 0.11 deleterious(0) probably_damaging(0.935) TCGA-66-2769-01 6 49437965 49437965 G T CENPQ Nonsense_Mutation p.E26* 0.11 TCGA-66-2769-01 6 56334944 56334944 G A DST Silent p.A4863A 0.20 TCGA-66-2769-01 6 564926 564926 C A EXOC2 Missense_Mutation p.A483S 0.20 tolerated(0.31) benign(0.384) TCGA-66-2769-01 6 70976433 70976433 C G COL9A1 Missense_Mutation p.R443T 0.06 benign(0.268) TCGA-66-2769-01 6 88769260 88769260 T C SPACA1 Silent p.N188N 0.10 TCGA-66-2769-01 7 100696378 100696378 C G MUC17 Missense_Mutation p.I4405M 0.16 benign(0.035) TCGA-66-2769-01 7 101188676 101188676 C G COL26A1 Missense_Mutation p.P254R 0.15 deleterious(0.02) probably_damaging(1) TCGA-66-2769-01 7 102952159 102952159 G C PMPCB Missense_Mutation p.M408I 0.13 tolerated(0.22) benign(0.004) TCGA-66-2769-01 7 103236912 103236912 C G RELN Missense_Mutation p.S1177T 0.10 tolerated(0.58) benign(0.014) TCGA-66-2769-01 7 103252089 103252089 T A RELN Missense_Mutation p.N955I 0.14 deleterious(0) possibly_damaging(0.558) TCGA-66-2769-01 7 104747140 104747140 G T KMT2E Missense_Mutation p.C923F 0.24 deleterious_low_confidence(0.01) benign(0.308) TCGA-66-2769-01 7 132193158 132193158 G T PLXNA4 Missense_Mutation p.R99S 0.21 tolerated(0.82) benign(0.02) TCGA-66-2769-01 7 135289107 135289107 A T NUP205 Missense_Mutation p.T908S 0.08 tolerated(0.83) benign(0.001) TCGA-66-2769-01 7 139258053 139258053 A C HIPK2 Missense_Mutation p.F1073V 0.10 deleterious(0.02) probably_damaging(0.985) TCGA-66-2769-01 7 139826500 139826500 T C KDM7A Silent p.Q275Q 0.18 TCGA-66-2769-01 7 142881513 142881513 A T TAS2R39 Missense_Mutation p.K334N 0.29 deleterious(0.04) benign(0.086) TCGA-66-2769-01 7 148921264 148921264 G T ZNF282 Missense_Mutation p.R514L 0.28 tolerated(0.1) benign(0.186) TCGA-66-2769-01 7 151292508 151292508 G A PRKAG2 Nonsense_Mutation p.R263* 0.14 TCGA-66-2769-01 7 15425126 15425126 A G AGMO Missense_Mutation p.V340A 0.17 tolerated(0.15) benign(0.009) TCGA-66-2769-01 7 156450919 156450919 G T RNF32 Missense_Mutation p.R183L 0.10 deleterious(0.01) possibly_damaging(0.838) TCGA-66-2769-01 7 157000137 157000137 G A UBE3C Missense_Mutation p.M488I 0.09 tolerated(0.14) benign(0.024) TCGA-66-2769-01 7 23357328 23357328 G C IGF2BP3 Missense_Mutation p.A442G 0.09 deleterious(0.04) benign(0.3) TCGA-66-2769-01 7 30649346 30649346 G C GARS Missense_Mutation p.G294A 0.12 tolerated(0.13) probably_damaging(0.961) TCGA-66-2769-01 7 44185167 44185167 G C GCK Silent p.R395R 0.36 TCGA-66-2769-01 7 47384387 47384387 C G TNS3 Silent p.L872L 0.18 TCGA-66-2769-01 7 50514158 50514158 C G FIGNL1 Missense_Mutation p.K276N 0.12 tolerated(0.12) benign(0.021) TCGA-66-2769-01 7 50514380 50514380 T A FIGNL1 Silent p.T202T 0.09 TCGA-66-2769-01 7 51095911 51095911 A G COBL Missense_Mutation p.L961S 0.07 tolerated(0.87) benign(0.004) TCGA-66-2769-01 7 5269298 5269298 C G WIPI2 Missense_Mutation p.P394R 0.17 deleterious(0.01) benign(0.066) TCGA-66-2769-01 7 66410080 66410080 C A TMEM248 Missense_Mutation p.Q93K 0.22 tolerated(0.6) benign(0.03) TCGA-66-2769-01 7 72658695 72658695 G A GTF2IRD2P1 RNA 0.13 TCGA-66-2769-01 7 73474324 73474324 G C ELN Missense_Mutation p.G508A 0.10 unknown(0) TCGA-66-2769-01 7 7635984 7635984 G C MIOS Missense_Mutation p.G765R 0.23 deleterious(0.01) probably_damaging(0.982) TCGA-66-2769-01 7 80456764 80456766 TGC - SEMA3C Nonsense_Mutation p.C101_K102delins* 0.12 TCGA-66-2769-01 7 82583731 82583731 C A PCLO Missense_Mutation p.D2180Y 0.23 unknown(0) TCGA-66-2769-01 7 91714172 91714172 A T AKAP9 Missense_Mutation p.H2917L 0.20 benign(0.03) TCGA-66-2769-01 7 97823136 97823136 T C LMTK2 Missense_Mutation p.V1120A 0.06 tolerated(0.39) benign(0.008) TCGA-66-2769-01 7 98957197 98957197 C T ARPC1A Silent p.N273N 0.23 TCGA-66-2769-01 8 109488188 109488188 C T EMC2 Missense_Mutation p.A196V 0.09 deleterious(0.02) possibly_damaging(0.498) TCGA-66-2769-01 8 109796853 109796853 C A TMEM74 Nonsense_Mutation p.E159* 0.16 TCGA-66-2769-01 8 113266521 113266521 C A CSMD3 Silent p.V3357V 0.17 TCGA-66-2769-01 8 124089383 124089383 A C TBC1D31 Missense_Mutation p.D37A 0.07 tolerated(0.31) benign(0.004) TCGA-66-2769-01 8 132968154 132968154 T G EFR3A Splice_Site p.X259_splice 0.14 TCGA-66-2769-01 8 139163499 139163499 G T FAM135B Silent p.S1073S 0.06 TCGA-66-2769-01 8 139697540 139697540 C T COL22A1 Missense_Mutation p.E960K 0.05 unknown(0) TCGA-66-2769-01 8 141370264 141370264 C G TRAPPC9 Missense_Mutation p.Q558H 0.07 deleterious(0) possibly_damaging(0.904) TCGA-66-2769-01 8 145661803 145661803 T C TONSL Splice_Site p.X672_splice 0.08 TCGA-66-2769-01 8 145689938 145689938 G C CYHR1 Missense_Mutation p.L51V 0.06 tolerated_low_confidence(0.16) benign(0.364) TCGA-66-2769-01 8 36673149 36673149 A G KCNU1 Silent p.E313E 0.37 TCGA-66-2769-01 8 37734690 37734690 C A RAB11FIP1 Nonsense_Mutation p.G251* 0.10 TCGA-66-2769-01 8 61749486 61749486 G T CHD7 Missense_Mutation p.R1367M 0.18 probably_damaging(0.999) TCGA-66-2769-01 8 66619373 66619373 G C MTFR1 Missense_Mutation p.E216Q 0.21 tolerated(0.18) benign(0.035) TCGA-66-2769-01 8 66753727 66753727 T A PDE7A Missense_Mutation p.Q6L 0.10 deleterious(0) probably_damaging(0.953) TCGA-66-2769-01 8 71060680 71060680 A T NCOA2 Missense_Mutation p.D811E 0.07 tolerated(0.19) benign(0.113) TCGA-66-2769-01 8 73932918 73932918 G C TERF1 Splice_Site p.X139_splice 0.10 TCGA-66-2769-01 8 75227832 75227832 C T JPH1 Missense_Mutation p.G135R 0.05 tolerated(0.16) probably_damaging(0.992) TCGA-66-2769-01 8 77690616 77690616 C T ZFHX4 Missense_Mutation p.P1089L 0.05 benign(0) TCGA-66-2769-01 8 89180192 89180192 C T MMP16 Missense_Mutation p.V139I 0.11 tolerated(0.14) benign(0.07) TCGA-66-2769-01 9 113169727 113169727 T A SVEP1 Missense_Mutation p.D2718V 0.14 possibly_damaging(0.474) TCGA-66-2769-01 9 116136286 116136286 C - HDHD3 Frame_Shift_Del p.A117Lfs*5 0.18 TCGA-66-2769-01 9 125486727 125486727 C A OR1L4 Silent p.S153S 0.22 TCGA-66-2769-01 9 125486728 125486728 C A OR1L4 Missense_Mutation p.H154N 0.22 tolerated(0.61) possibly_damaging(0.77) TCGA-66-2769-01 9 135413065 135413065 A G C9orf171 Missense_Mutation p.K237R 0.26 tolerated(0.38) benign(0.033) TCGA-66-2769-01 9 136328615 136328615 C A CACFD1 Silent p.I44I 0.12 TCGA-66-2769-01 9 72131290 72131290 C G APBA1 Missense_Mutation p.Q279H 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.564) TCGA-66-2769-01 9 79252358 79252358 T C PRUNE2 Missense_Mutation p.K2980R 0.14 deleterious(0.04) possibly_damaging(0.656) TCGA-66-2769-01 9 8517855 8517855 C G PTPRD Missense_Mutation p.Q512H 0.15 deleterious(0.03) probably_damaging(0.991) TCGA-66-2769-01 9 88190369 88190369 C A AGTPBP1 Nonsense_Mutation p.E1082* 0.27 TCGA-66-2769-01 9 91667016 91667016 C T SHC3 Missense_Mutation p.A300T 0.40 deleterious(0) probably_damaging(1) TCGA-66-2769-01 X 100653066 100653066 C - GLA Frame_Shift_Del p.E341Nfs*7 0.17 TCGA-66-2769-01 X 111003002 111003002 A T ALG13 Silent p.G1063G 0.31 TCGA-66-2769-01 X 125686176 125686176 C A DCAF12L1 Missense_Mutation p.S139I 0.47 deleterious(0.01) benign(0.028) TCGA-66-2769-01 X 127185708 127185708 C G ACTRT1 Missense_Mutation p.D160H 0.24 tolerated(0.06) benign(0.004) TCGA-66-2769-01 X 129813669 129813669 C G ENOX2 Missense_Mutation p.V132L 0.23 deleterious(0) probably_damaging(0.997) TCGA-66-2769-01 X 135428174 135428174 C A GPR112 Missense_Mutation p.P770H 0.25 deleterious(0) benign(0.339) TCGA-66-2769-01 X 151900539 151900539 T A MAGEA12 Missense_Mutation p.S88C 0.54 deleterious(0.02) benign(0.317) TCGA-66-2769-01 X 18195834 18195834 G C BEND2 Silent p.A495A 0.29 TCGA-66-2769-01 X 18195835 18195835 G T BEND2 Missense_Mutation p.A495D 0.29 deleterious(0.01) possibly_damaging(0.76) TCGA-66-2769-01 X 20043970 20043970 T G MAP7D2 Missense_Mutation p.M370L 0.27 tolerated(0.13) benign(0.009) TCGA-66-2769-01 X 30261111 30261111 G A MAGEB4 Missense_Mutation p.E287K 0.29 deleterious(0.04) benign(0.411) TCGA-66-2769-01 X 30269197 30269197 C A MAGEB1 Missense_Mutation p.P196H 0.64 deleterious(0) probably_damaging(0.997) TCGA-66-2769-01 X 30269198 30269198 C A MAGEB1 Silent p.P196P 0.61 TCGA-66-2769-01 X 37026721 37026721 A T FAM47C Nonsense_Mutation p.K80* 0.47 TCGA-66-2769-01 X 46952311 46952311 G A RGN Missense_Mutation p.V289I 0.34 deleterious(0.03) benign(0.194) TCGA-66-2769-01 X 50052471 50052471 A G CCNB3 Silent p.E434E 0.21 TCGA-66-2769-01 X 50119124 50119124 G A DGKK RNA 0.54 TCGA-66-2769-01 X 50133393 50133393 A G DGKK RNA 0.18 TCGA-66-2769-01 X 51639617 51639617 G T MAGED1 Missense_Mutation p.G345V 0.51 tolerated_low_confidence(0.06) unknown(0) TCGA-66-2769-01 X 54817333 54817333 C A ITIH6 Missense_Mutation p.G185C 0.35 deleterious(0) probably_damaging(0.999) TCGA-66-2769-01 X 56590816 56590816 G T UBQLN2 Missense_Mutation p.Q170H 0.19 tolerated(0.07) benign(0.033) TCGA-66-2769-01 X 63409722 63409722 C T AMER1 3'UTR 0.23 TCGA-66-2769-01 X 70357685 70357685 C G MED12 Missense_Mutation p.S1979C 0.20 possibly_damaging(0.754) TCGA-66-2770-01 10 106849548 106849548 G T SORCS3 Missense_Mutation p.L348F 0.55 deleterious(0.04) benign(0.168) TCGA-66-2770-01 10 118321063 118321063 T C PNLIP Missense_Mutation p.F417L 0.39 deleterious(0.02) possibly_damaging(0.866) TCGA-66-2770-01 10 121662509 121662509 A G SEC23IP Missense_Mutation p.I299V 0.46 tolerated(0.38) benign(0.001) TCGA-66-2770-01 10 13838563 13838563 C A FRMD4A Missense_Mutation p.D78Y 0.42 deleterious(0) probably_damaging(0.999) TCGA-66-2770-01 10 18292244 18292244 C T SLC39A12 Missense_Mutation p.T635I 0.38 deleterious(0) probably_damaging(0.948) TCGA-66-2770-01 10 27703181 27703181 G C PTCHD3 5'UTR 0.37 TCGA-66-2770-01 11 100179274 100179274 T A CNTN5 Intron 0.44 TCGA-66-2770-01 11 104825645 104825645 C G CASP4 Missense_Mutation p.E31Q 0.11 tolerated(0.34) benign(0.392) TCGA-66-2770-01 11 105623732 105623733 - TT GRIA4 Frame_Shift_Ins p.A93Lfs*15 0.14 TCGA-66-2770-01 11 108010931 108010931 T A ACAT1 Missense_Mutation p.V240D 0.34 deleterious(0) probably_damaging(0.922) TCGA-66-2770-01 11 119029409 119029409 C T ABCG4 Missense_Mutation p.A437V 0.36 tolerated(0.08) benign(0.196) TCGA-66-2770-01 11 123814097 123814097 A G OR6T1 Missense_Mutation p.L150P 0.28 deleterious(0) probably_damaging(0.934) TCGA-66-2770-01 11 124294342 124294342 C G OR8B4 Silent p.L142L 0.17 TCGA-66-2770-01 11 19247348 19247348 T C E2F8 Missense_Mutation p.I653V 0.23 tolerated(0.31) benign(0.002) TCGA-66-2770-01 11 26538428 26538428 A C ANO3 Missense_Mutation p.T216P 0.27 deleterious(0) possibly_damaging(0.723) TCGA-66-2770-01 11 33667414 33667414 G A KIAA1549L Silent p.A1567A 0.41 TCGA-66-2770-01 11 376311 376311 C T B4GALNT4 Silent p.D419D 0.05 TCGA-66-2770-01 11 40136824 40136825 - AC LRRC4C Frame_Shift_Ins p.Y340Cfs*17 0.24 TCGA-66-2770-01 11 49974139 49974139 C A OR4C13 Silent p.S55S 0.35 TCGA-66-2770-01 11 5289715 5289715 G A HBE1 Missense_Mutation p.A143V 0.21 deleterious(0.01) benign(0.007) TCGA-66-2770-01 11 55735597 55735597 C A OR10AG1 Missense_Mutation p.V115L 0.33 deleterious(0.01) benign(0.426) TCGA-66-2770-01 11 55944287 55944287 G A OR5J2 Missense_Mutation p.C65Y 0.18 tolerated(0.2) benign(0.14) TCGA-66-2770-01 11 55944701 55944701 C A OR5J2 Missense_Mutation p.S203Y 0.14 tolerated(0.18) probably_damaging(0.934) TCGA-66-2770-01 11 5798965 5798965 A T OR52N5 Silent p.I300I 0.33 TCGA-66-2770-01 11 58723190 58723190 G A GLYATL1 Missense_Mutation p.R231H 0.45 tolerated(0.06) benign(0.067) TCGA-66-2770-01 11 71806464 71806464 C T LRTOMT Intron 0.12 TCGA-66-2770-01 12 10168415 10168415 A G CLEC12B Intron 0.18 TCGA-66-2770-01 12 101769492 101769493 - T UTP20 Frame_Shift_Ins p.Q2453Sfs*7 0.14 TCGA-66-2770-01 12 102471234 102471234 C A NUP37 Missense_Mutation p.L196F 0.32 tolerated(0.47) benign(0.035) TCGA-66-2770-01 12 112667515 112667515 C T HECTD4 Missense_Mutation p.G2023E 0.17 probably_damaging(0.945) TCGA-66-2770-01 12 119563223 119563223 C A SRRM4 Missense_Mutation p.H185N 0.46 deleterious_low_confidence(0) unknown(0) TCGA-66-2770-01 12 120588997 120588997 C T GCN1L1 Missense_Mutation p.A1421T 0.04 benign(0) TCGA-66-2770-01 12 133424752 133424752 G A CHFR Intron 0.10 TCGA-66-2770-01 12 21205156 21205156 A G SLCO1B7 Silent p.L439L 0.12 TCGA-66-2770-01 12 25147249 25147249 A T C12orf77 Silent p.A140A 0.28 TCGA-66-2770-01 12 56848169 56848169 C A MIP Missense_Mutation p.V77L 0.21 tolerated(0.28) benign(0.001) TCGA-66-2770-01 12 57111922 57111922 G A NACA Intron 0.11 TCGA-66-2770-01 12 57111991 57111991 G A NACA Intron 0.40 TCGA-66-2770-01 12 6936188 6936188 G T GPR162 Missense_Mutation p.R529L 0.18 tolerated_low_confidence(0.89) benign(0.032) TCGA-66-2770-01 12 7649613 7649613 C G CD163 Missense_Mutation p.D299H 0.17 deleterious(0.04) probably_damaging(0.986) TCGA-66-2770-01 12 78400260 78400260 T A NAV3 Silent p.T314T 0.16 TCGA-66-2770-01 12 94613888 94613888 C A PLXNC1 Missense_Mutation p.Q551K 0.33 tolerated(0.93) benign(0.01) TCGA-66-2770-01 13 101997647 101997647 C A NALCN Nonsense_Mutation p.E257* 0.16 TCGA-66-2770-01 13 101997649 101997649 T G NALCN Missense_Mutation p.Q256P 0.17 tolerated(0.28) possibly_damaging(0.781) TCGA-66-2770-01 13 60686259 60686259 T G DIAPH3 Missense_Mutation p.N92T 0.32 deleterious(0.03) benign(0.11) TCGA-66-2770-01 13 73357625 73357625 A G PIBF1 Silent p.S6S 0.26 TCGA-66-2770-01 13 74420351 74420351 C G KLF12 Missense_Mutation p.A95P 0.12 tolerated(0.2) benign(0.276) TCGA-66-2770-01 13 92380805 92380805 G T GPC5 Missense_Mutation p.R347L 0.17 tolerated(0.19) benign(0.016) TCGA-66-2770-01 13 98642449 98642449 G T IPO5 Missense_Mutation p.Q197H 0.24 tolerated(0.06) probably_damaging(0.976) TCGA-66-2770-01 14 102476340 102476340 G T DYNC1H1 Silent p.R2046R 0.39 TCGA-66-2770-01 14 52899013 52899013 C T TXNDC16 3'UTR 0.14 TCGA-66-2770-01 14 59014620 59014620 C A KIAA0586 Missense_Mutation p.H1621N 0.35 tolerated_low_confidence(0.23) benign(0.003) TCGA-66-2770-01 14 70420249 70420249 G C SMOC1 Missense_Mutation p.Q126H 0.40 deleterious(0) possibly_damaging(0.739) TCGA-66-2770-01 14 86088872 86088872 G T FLRT2 Missense_Mutation p.M338I 0.40 tolerated(0.08) benign(0.028) TCGA-66-2770-01 14 93397627 93397627 A G CHGA Missense_Mutation p.M130V 0.52 tolerated(0.97) benign(0.001) TCGA-66-2770-01 14 96137674 96137674 C G TCL6 RNA 0.30 TCGA-66-2770-01 15 22332688 22332688 T G RP11-69H14.6 RNA 0.21 TCGA-66-2770-01 15 22368874 22368874 A T OR4M2 Missense_Mutation p.Q100L 0.15 deleterious(0) probably_damaging(0.996) TCGA-66-2770-01 15 24924555 24924555 T A NPAP1 3'UTR 0.36 TCGA-66-2770-01 15 31664418 31664418 C T KLF13 Silent p.G261G 0.29 TCGA-66-2770-01 15 41289779 41289779 A C INO80 Missense_Mutation p.L1173R 0.32 deleterious(0) probably_damaging(1) TCGA-66-2770-01 15 41352108 41352108 C A INO80 Missense_Mutation p.G600V 0.24 deleterious(0) probably_damaging(0.998) TCGA-66-2770-01 15 42379860 42379860 G T PLA2G4D Silent p.V28V 0.26 TCGA-66-2770-01 15 43819245 43819245 C T MAP1A Silent p.S1858S 0.57 TCGA-66-2770-01 15 43826652 43826652 G A PPIP5K1 3'UTR 0.36 TCGA-66-2770-01 15 54860022 54860022 G T UNC13C Missense_Mutation p.G1995C 0.24 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-66-2770-01 15 68631962 68631962 G A ITGA11 Silent p.A384A 0.17 TCGA-66-2770-01 15 73843343 73843343 G A C15orf60 Missense_Mutation p.C133Y 0.25 deleterious(0) probably_damaging(1) TCGA-66-2770-01 15 75657002 75657002 T A MAN2C1 Missense_Mutation p.T143S 0.33 tolerated(0.15) benign(0.086) TCGA-66-2770-01 15 81181824 81181824 C T KIAA1199 Missense_Mutation p.T326M 0.28 deleterious(0) probably_damaging(0.996) TCGA-66-2770-01 15 89424922 89424922 T A HAPLN3 Silent p.T53T 0.32 TCGA-66-2770-01 16 2819035 2819035 C T SRRM2 Nonsense_Mutation p.R2591* 0.14 TCGA-66-2770-01 16 31283176 31283176 G T ITGAM Missense_Mutation p.L189F 0.25 deleterious(0) probably_damaging(1) TCGA-66-2770-01 16 57931765 57931765 C T CNGB1 Silent p.L1010L 0.11 TCGA-66-2770-01 16 737632 737632 C T WDR24 Missense_Mutation p.D197N 0.32 deleterious(0.01) probably_damaging(0.988) TCGA-66-2770-01 16 84353145 84353145 G A WFDC1 Missense_Mutation p.R177H 0.17 tolerated(0.07) benign(0.004) TCGA-66-2770-01 16 88779197 88779197 G T CTU2 Silent p.P207P 0.33 TCGA-66-2770-01 17 10315825 10315825 C A MYH8 Silent p.A426A 0.28 TCGA-66-2770-01 17 17398864 17398864 C G RASD1 Missense_Mutation p.V141L 0.26 deleterious(0.03) possibly_damaging(0.903) TCGA-66-2770-01 17 20768696 20768696 G - CCDC144NL 3'UTR 0.19 TCGA-66-2770-01 17 33289390 33289390 C T ZNF830 Nonsense_Mutation p.Q269* 0.29 TCGA-66-2770-01 17 3595086 3595086 C A P2RX5 Missense_Mutation p.W47L 0.27 deleterious(0) probably_damaging(0.997) TCGA-66-2770-01 17 50008401 50008401 C A CA10 Missense_Mutation p.M76I 0.29 tolerated(0.22) benign(0.012) TCGA-66-2770-01 17 5993784 5993784 C T WSCD1 Missense_Mutation p.S229F 0.37 deleterious(0) benign(0.076) TCGA-66-2770-01 17 74007920 74007920 G A EVPL Missense_Mutation p.P834L 0.30 deleterious(0.01) possibly_damaging(0.548) TCGA-66-2770-01 17 74681210 74681210 C T MXRA7 Silent p.L148L 0.25 TCGA-66-2770-01 17 75139682 75139682 G T SEC14L1 Missense_Mutation p.V2L 0.27 deleterious(0) benign(0.441) TCGA-66-2770-01 17 7577138 7577138 C G TP53 Missense_Mutation p.R267P 0.32 deleterious(0) probably_damaging(0.997) TCGA-66-2770-01 17 79226320 79226320 C T SLC38A10 Silent p.P540P 0.16 TCGA-66-2770-01 18 15325725 15325725 A T RNU6-721P 5'Flank 0.31 TCGA-66-2770-01 18 44470553 44470553 G - PIAS2 Frame_Shift_Del p.T164Rfs*3 0.21 TCGA-66-2770-01 18 44470609 44470609 C T PIAS2 Missense_Mutation p.D145N 0.22 deleterious(0) probably_damaging(0.945) TCGA-66-2770-01 18 51904607 51904607 G A C18orf54 Silent p.P370P 0.21 TCGA-66-2770-01 18 55143879 55143879 G A ONECUT2 Missense_Mutation p.R480H 0.28 deleterious(0) probably_damaging(0.999) TCGA-66-2770-01 18 64197141 64197141 C T CDH19 Missense_Mutation p.A467T 0.16 deleterious(0.01) possibly_damaging(0.697) TCGA-66-2770-01 19 15166251 15166251 C A CASP14 Silent p.A177A 0.27 TCGA-66-2770-01 19 1978856 1978856 A T CSNK1G2 Splice_Site p.X150_splice 0.32 TCGA-66-2770-01 19 22586297 22586297 C A ZNF98 Missense_Mutation p.R16S 0.28 deleterious(0.01) probably_damaging(0.987) TCGA-66-2770-01 19 23544756 23544756 C A ZNF91 Missense_Mutation p.R342I 0.03 tolerated(0.19) benign(0) TCGA-66-2770-01 19 35556848 35556848 G T HPN Missense_Mutation p.S376I 0.24 deleterious(0) probably_damaging(1) TCGA-66-2770-01 19 39214345 39214345 C G ACTN4 Missense_Mutation p.R512G 0.26 deleterious(0) probably_damaging(0.998) TCGA-66-2770-01 19 41281516 41281516 G T MIA Missense_Mutation p.R23S 0.34 tolerated(0.33) benign(0) TCGA-66-2770-01 19 42082643 42082643 C T CEACAM21 Missense_Mutation p.A6V 0.13 tolerated(0.05) possibly_damaging(0.742) TCGA-66-2770-01 19 42752782 42752782 G A ERF Silent p.L494L 0.28 TCGA-66-2770-01 19 47570607 47570607 A T ZC3H4 Missense_Mutation p.F973Y 0.24 unknown(0) TCGA-66-2770-01 19 47870255 47870255 G T DHX34 Silent p.V537V 0.19 TCGA-66-2770-01 19 5131486 5131486 G T KDM4B Missense_Mutation p.G572V 0.39 benign(0.005) TCGA-66-2770-01 19 51850279 51850279 C - ETFB Frame_Shift_Del p.D249Tfs*3 0.33 TCGA-66-2770-01 19 51986552 51986552 T G CEACAM18 Missense_Mutation p.C380G 0.27 deleterious_low_confidence(0.04) benign(0.012) TCGA-66-2770-01 19 52618417 52618417 C A ZNF616 Missense_Mutation p.G667V 0.19 deleterious(0) probably_damaging(0.999) TCGA-66-2770-01 19 52954776 52954776 C A ZNF578 5'Flank 0.26 TCGA-66-2770-01 19 54973315 54973315 C T LENG9 Silent p.R487R 0.30 TCGA-66-2770-01 19 56490903 56490903 G A NLRP8 Missense_Mutation p.S1007N 0.29 tolerated(0.44) benign(0.036) TCGA-66-2770-01 19 56895310 56895310 G A ZNF582 Silent p.Y492Y 0.28 TCGA-66-2770-01 19 57932022 57932022 T A ZNF17 Missense_Mutation p.C388S 0.27 deleterious(0.02) probably_damaging(1) TCGA-66-2770-01 19 58806661 58806661 A T ZNF8 Missense_Mutation p.H496L 0.23 tolerated(0.27) benign(0.004) TCGA-66-2770-01 19 7806125 7806125 C G CD209 3'UTR 0.27 TCGA-66-2770-01 19 9048195 9048195 G T MUC16 Missense_Mutation p.P11146T 0.24 benign(0) TCGA-66-2770-01 19 9066587 9066587 C A MUC16 Silent p.L6953L 0.29 TCGA-66-2770-01 1 102302451 102302451 C A OLFM3 Missense_Mutation p.R67L 0.44 deleterious(0.01) benign(0.205) TCGA-66-2770-01 1 109884723 109884723 G A SORT1 Nonsense_Mutation p.Q341* 0.49 TCGA-66-2770-01 1 145290427 145290427 A T NBPF10 5'Flank 0.06 TCGA-66-2770-01 1 14925564 14925564 C T KAZN Missense_Mutation p.T24I 0.33 deleterious(0.01) possibly_damaging(0.86) TCGA-66-2770-01 1 156244452 156244452 T A SMG5 Silent p.S160S 0.68 TCGA-66-2770-01 1 156571272 156571272 G T GPATCH4 5'Flank 0.27 TCGA-66-2770-01 1 159504938 159504938 A G OR10J5 Missense_Mutation p.V287A 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-66-2770-01 1 159505093 159505093 C T OR10J5 Silent p.K235K 0.15 TCGA-66-2770-01 1 165532887 165532887 C T LRRC52 Silent p.F256F 0.75 TCGA-66-2770-01 1 171765716 171765716 G T METTL13 Silent p.R640R 0.24 TCGA-66-2770-01 1 173721005 173721005 G T KLHL20 Missense_Mutation p.A234S 0.21 tolerated(0.06) possibly_damaging(0.739) TCGA-66-2770-01 1 179478447 179478447 G A AXDND1 Nonsense_Mutation p.W802* 0.13 TCGA-66-2770-01 1 196716474 196716474 G T CFH 3'UTR 0.27 TCGA-66-2770-01 1 196795988 196795988 G T CFHR1 Missense_Mutation p.G95C 0.10 deleterious(0.02) probably_damaging(0.969) TCGA-66-2770-01 1 196946691 196946691 A G CFHR5 5'UTR 0.74 TCGA-66-2770-01 1 197896750 197896750 G A LHX9 Missense_Mutation p.D255N 0.21 deleterious(0.01) benign(0.086) TCGA-66-2770-01 1 214171167 214171167 C T PROX1 Missense_Mutation p.A430V 0.26 tolerated(0.34) benign(0.011) TCGA-66-2770-01 1 221055663 221055663 G A HLX Silent p.A310A 0.18 TCGA-66-2770-01 1 237886496 237886496 C T RYR2 Silent p.T3541T 0.65 TCGA-66-2770-01 1 240656438 240656438 T A GREM2 Missense_Mutation p.E113V 0.19 tolerated(0.06) benign(0.189) TCGA-66-2770-01 1 243388606 243388606 T C CEP170 5'UTR 0.19 TCGA-66-2770-01 1 244218431 244218431 G A ZBTB18 Missense_Mutation p.C452Y 0.26 deleterious(0) possibly_damaging(0.899) TCGA-66-2770-01 1 248004824 248004824 G T OR11L1 Silent p.A125A 0.71 TCGA-66-2770-01 1 248616129 248616129 A G OR2T2 Missense_Mutation p.T11A 0.11 tolerated(0.08) probably_damaging(0.985) TCGA-66-2770-01 1 27180442 27180442 C A ZDHHC18 3'UTR 0.42 TCGA-66-2770-01 1 27240233 27240233 C T NR0B2 Missense_Mutation p.V67M 0.56 tolerated(0.11) benign(0.363) TCGA-66-2770-01 1 32682569 32682569 C G TMEM234 Intron 0.50 TCGA-66-2770-01 1 53555727 53555727 G T SLC1A7 Intron 0.50 TCGA-66-2770-01 1 67185073 67185073 G A SGIP1 Missense_Mutation p.G576E 0.34 deleterious(0) benign(0.299) TCGA-66-2770-01 1 86959914 86959914 G T CLCA1 Missense_Mutation p.L575F 0.43 deleterious(0.01) probably_damaging(0.958) TCGA-66-2770-01 1 92441932 92441932 T C BRDT Silent p.S185S 0.45 TCGA-66-2770-01 1 92546279 92546279 T A BTBD8 Splice_Site p.X50_splice 0.60 TCGA-66-2770-01 1 95709967 95709967 T C RWDD3 Missense_Mutation p.S96P 0.48 tolerated(0.42) benign(0.025) TCGA-66-2770-01 1 97250688 97250688 A G PTBP2 Missense_Mutation p.N261S 0.42 tolerated(0.06) possibly_damaging(0.806) TCGA-66-2770-01 20 1161519 1161519 C A TMEM74B Missense_Mutation p.E248D 0.40 tolerated_low_confidence(0.1) benign(0.023) TCGA-66-2770-01 20 139602 139602 G T DEFB127 Silent p.L79L 0.28 TCGA-66-2770-01 20 2375159 2375159 G A TGM6 Silent p.Q23Q 0.18 TCGA-66-2770-01 20 31022550 31022550 G T ASXL1 Nonsense_Mutation p.G679* 0.21 TCGA-66-2770-01 20 35154325 35154325 C T DLGAP4 Silent p.I889I 0.25 TCGA-66-2770-01 20 42195738 42195738 G T SGK2 Missense_Mutation p.G83W 0.26 deleterious(0) probably_damaging(0.944) TCGA-66-2770-01 20 47266696 47266696 G A PREX1 Missense_Mutation p.P956S 0.26 tolerated(0.61) benign(0.001) TCGA-66-2770-01 20 57581398 57581398 C T CTSZ Missense_Mutation p.A96T 0.30 deleterious(0) possibly_damaging(0.816) TCGA-66-2770-01 20 62076601 62076601 G A KCNQ2 Silent p.F168F 0.35 TCGA-66-2770-01 20 8782704 8782704 G T PLCB1 Intron 0.30 TCGA-66-2770-01 21 22746235 22746235 A T NCAM2 Missense_Mutation p.H366L 0.29 tolerated(0.08) benign(0.014) TCGA-66-2770-01 21 22804459 22804459 C A NCAM2 Silent p.I504I 0.28 TCGA-66-2770-01 21 22910194 22910194 G A NCAM2 Silent p.G810G 0.04 TCGA-66-2770-01 21 43248563 43248563 C A PRDM15 Missense_Mutation p.R864L 0.31 deleterious(0.03) possibly_damaging(0.905) TCGA-66-2770-01 21 46021239 46021247 AAGCCCGTC GTGCCTGTG KRTAP10-7 Missense_Mutation p.K240V 0.21 TCGA-66-2770-01 21 46057812 46057812 G T KRTAP10-10 Missense_Mutation p.V160L 0.28 deleterious(0.03) possibly_damaging(0.673) TCGA-66-2770-01 21 46932158 46932158 G A COL18A1 Missense_Mutation p.S1469N 0.38 benign(0.039) TCGA-66-2770-01 22 19799846 19799846 G A GNB1L Missense_Mutation p.R127C 0.07 tolerated(0.11) benign(0.004) TCGA-66-2770-01 22 20398252 20398252 A C PI4KAP1 RNA 0.12 TCGA-66-2770-01 22 21800819 21800819 C T HIC2 Silent p.R545R 0.15 TCGA-66-2770-01 22 44342522 44342522 C T PNPLA3 3'UTR 0.15 TCGA-66-2770-01 22 50665440 50665440 G A TUBGCP6 Silent p.A493A 0.36 TCGA-66-2770-01 2 103324608 103324608 C A SLC9A2 Missense_Mutation p.A700D 0.28 tolerated(0.2) benign(0.002) TCGA-66-2770-01 2 107004075 107004075 C A PLGLA RNA 0.08 TCGA-66-2770-01 2 107422992 107422992 G A ST6GAL2 3'UTR 0.47 TCGA-66-2770-01 2 125262050 125262050 G T CNTNAP5 Missense_Mutation p.G414V 0.23 deleterious(0.03) probably_damaging(1) TCGA-66-2770-01 2 130832650 130832650 C T POTEF Missense_Mutation p.E799K 0.23 deleterious_low_confidence(0.02) possibly_damaging(0.878) TCGA-66-2770-01 2 137814051 137814051 G T THSD7B Missense_Mutation p.W67C 0.26 deleterious(0) possibly_damaging(0.878) TCGA-66-2770-01 2 155555400 155555400 T C KCNJ3 Missense_Mutation p.V38A 0.24 tolerated(0.82) benign(0) TCGA-66-2770-01 2 160035208 160035208 G A TANC1 Missense_Mutation p.G682S 0.30 deleterious(0.01) probably_damaging(1) TCGA-66-2770-01 2 162087631 162087631 A T TANK Missense_Mutation p.T224S 0.26 tolerated(0.58) benign(0.035) TCGA-66-2770-01 2 163059575 163059575 A G FAP Silent p.H376H 0.25 TCGA-66-2770-01 2 163174519 163174519 G A IFIH1 Missense_Mutation p.T100M 0.32 deleterious(0.04) benign(0.238) TCGA-66-2770-01 2 175436394 175436394 C T WIPF1 Intron 0.32 TCGA-66-2770-01 2 178098810 178098810 C G NFE2L2 Missense_Mutation p.E79Q 0.30 deleterious(0) probably_damaging(1) TCGA-66-2770-01 2 179441405 179441405 G A TTN Missense_Mutation p.A23189V 0.30 TCGA-66-2770-01 2 179595260 179595261 - T TTN Frame_Shift_Ins p.N6000Kfs*48 0.29 TCGA-66-2770-01 2 179633506 179633506 T C TTN Silent p.K3019K 0.26 TCGA-66-2770-01 2 182360566 182360566 G A ITGA4 Missense_Mutation p.R481K 0.27 tolerated(0.77) benign(0.058) TCGA-66-2770-01 2 188247906 188247906 C G CALCRL Missense_Mutation p.A60P 0.27 tolerated(0.19) benign(0) TCGA-66-2770-01 2 197878392 197878392 C G HNRNPA3P15 5'Flank 0.30 TCGA-66-2770-01 2 201761925 201761925 G T NIF3L1 Missense_Mutation p.G285W 0.33 deleterious(0) probably_damaging(0.991) TCGA-66-2770-01 2 214215364 214215364 G T SPAG16 Missense_Mutation p.G253W 0.25 deleterious(0.04) possibly_damaging(0.664) TCGA-66-2770-01 2 217279494 217279494 C G SMARCAL1 Missense_Mutation p.R23G 0.30 deleterious(0) probably_damaging(0.999) TCGA-66-2770-01 2 219857818 219857818 A G CRYBA2 Silent p.C27C 0.25 TCGA-66-2770-01 2 225266335 225266335 C A FAM124B Missense_Mutation p.V51L 0.30 tolerated(0.46) benign(0.024) TCGA-66-2770-01 2 228882360 228882360 C T SPHKAP Silent p.L1070L 0.16 TCGA-66-2770-01 2 240984557 240984557 G T OR6B3 Silent p.A311A 0.45 TCGA-66-2770-01 2 25470586 25470587 - A DNMT3A Frame_Shift_Ins p.W297Vfs*27 0.40 TCGA-66-2770-01 2 32754743 32754743 A G BIRC6 Silent p.T3982T 0.24 TCGA-66-2770-01 2 3691564 3691564 C T COLEC11 Silent p.T238T 0.28 TCGA-66-2770-01 2 37459294 37459294 A T NDUFAF7 Missense_Mutation p.E34V 0.30 deleterious(0.05) benign(0.066) TCGA-66-2770-01 2 7027272 7027272 G T RSAD2 Missense_Mutation p.A239S 0.18 tolerated(0.65) benign(0.056) TCGA-66-2770-01 2 80620414 80620414 C A CTNNA2 Missense_Mutation p.Q379K 0.22 deleterious(0.01) benign(0.167) TCGA-66-2770-01 2 89544476 89544476 C T IGKV2-30 Missense_Mutation p.V50I 0.21 tolerated(0.06) benign(0.001) TCGA-66-2770-01 2 90044199 90044199 C T IGKV2D-24 Silent p.S40S 0.24 TCGA-66-2770-01 3 111831729 111831729 A G C3orf52 Intron 0.24 TCGA-66-2770-01 3 112358447 112358447 C T CCDC80 Silent p.V102V 0.20 TCGA-66-2770-01 3 113849981 113849981 C T DRD3 Missense_Mutation p.M330I 0.66 deleterious(0.01) possibly_damaging(0.516) TCGA-66-2770-01 3 118621695 118621695 C T IGSF11 Missense_Mutation p.S323N 0.14 tolerated(0.54) benign(0.001) TCGA-66-2770-01 3 127541223 127541223 G C MGLL 5'UTR 0.28 TCGA-66-2770-01 3 130656305 130656305 C T ATP2C1 Nonsense_Mutation p.Q154* 0.21 TCGA-66-2770-01 3 136170936 136170936 C - STAG1 Frame_Shift_Del p.G456Efs*41 0.23 TCGA-66-2770-01 3 147131323 147131323 C G ZIC1 Missense_Mutation p.N443K 0.22 deleterious(0) possibly_damaging(0.451) TCGA-66-2770-01 3 152554799 152554799 C G P2RY1 3'UTR 0.73 TCGA-66-2770-01 3 169801789 169801789 C A GPR160 Missense_Mutation p.S10Y 0.47 deleterious(0.02) benign(0.132) TCGA-66-2770-01 3 173322633 173322633 G T NLGN1 Missense_Mutation p.G82V 0.17 deleterious(0) probably_damaging(1) TCGA-66-2770-01 3 180694181 180694181 G A FXR1 3'UTR 0.13 TCGA-66-2770-01 3 195515753 195515753 C T MUC4 Missense_Mutation p.E900K 0.48 unknown(0) TCGA-66-2770-01 3 20212600 20212600 T A SGOL1 Silent p.P469P 0.35 TCGA-66-2770-01 3 30885900 30885900 C A GADL1 Missense_Mutation p.C237F 0.40 tolerated(0.45) benign(0.001) TCGA-66-2770-01 3 51967584 51967584 G T RRP9 Silent p.R456R 0.47 TCGA-66-2770-01 3 52022593 52022593 A T ACY1 Silent p.A325A 0.35 TCGA-66-2770-01 3 52312361 52312361 C G WDR82 Missense_Mutation p.S6T 0.57 tolerated(0.33) benign(0.001) TCGA-66-2770-01 3 95374106 95374106 C A MTHFD2P1 RNA 0.27 TCGA-66-2770-01 4 142642260 142642260 A G IL15 Intron 0.24 TCGA-66-2770-01 4 155749345 155749345 G C RBM46 3'UTR 0.20 TCGA-66-2770-01 4 177052767 177052767 C A WDR17 Missense_Mutation p.P350T 0.14 tolerated(0.12) probably_damaging(0.999) TCGA-66-2770-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.16 deleterious(0.01) possibly_damaging(0.594) TCGA-66-2770-01 4 26689973 26689973 A T TBC1D19 Nonsense_Mutation p.K300* 0.32 TCGA-66-2770-01 4 6083357 6083357 G T JAKMIP1 Silent p.L360L 0.19 TCGA-66-2770-01 4 68396613 68396613 T A CENPC Missense_Mutation p.K84M 0.67 deleterious(0) probably_damaging(0.99) TCGA-66-2770-01 4 8108243 8108243 G T ABLIM2 Missense_Mutation p.H44Q 0.53 deleterious(0) probably_damaging(1) TCGA-66-2770-01 4 85414486 85414486 C A NKX6-1 Missense_Mutation p.G354C 0.25 deleterious_low_confidence(0.04) unknown(0) TCGA-66-2770-01 5 127730898 127730898 A T FBN2 Missense_Mutation p.M383K 0.14 tolerated(0.12) benign(0.308) TCGA-66-2770-01 5 127744403 127744403 C A FBN2 Nonsense_Mutation p.G348* 0.36 TCGA-66-2770-01 5 131939024 131939024 T A RAD50 Missense_Mutation p.I747K 0.21 deleterious(0) possibly_damaging(0.878) TCGA-66-2770-01 5 140032730 140032730 G A IK Splice_Site p.X135_splice 0.32 TCGA-66-2770-01 5 140207985 140207985 C A PCDHA6 Missense_Mutation p.S103R 0.15 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-66-2770-01 5 140237340 140237340 T C PCDHA10 Silent p.A569A 0.15 TCGA-66-2770-01 5 140248877 140248877 G A PCDHA11 Silent p.L63L 0.42 TCGA-66-2770-01 5 140595315 140595315 G T PCDHB13 Silent p.A540A 0.38 TCGA-66-2770-01 5 140768582 140768582 T C PCDHGB4 Silent p.N377N 0.19 TCGA-66-2770-01 5 141059334 141059334 C T ARAP3 Missense_Mutation p.G194S 0.38 tolerated_low_confidence(0.1) possibly_damaging(0.718) TCGA-66-2770-01 5 150663691 150663691 G C SLC36A3 Missense_Mutation p.I337M 0.39 tolerated(0.07) possibly_damaging(0.642) TCGA-66-2770-01 5 156755026 156755026 A G CYFIP2 Missense_Mutation p.I683V 0.27 tolerated(0.46) benign(0.124) TCGA-66-2770-01 5 156920133 156920133 C A ADAM19 Nonsense_Mutation p.E586* 0.27 TCGA-66-2770-01 5 156920134 156920134 C A ADAM19 Silent p.L585L 0.29 TCGA-66-2770-01 5 161117260 161117260 T A GABRA6 Missense_Mutation p.F243I 0.18 deleterious(0.02) probably_damaging(0.989) TCGA-66-2770-01 5 171471718 171471718 C G STK10 3'UTR 0.09 TCGA-66-2770-01 5 21975401 21975401 C T CDH12 Missense_Mutation p.G109R 0.36 deleterious(0) probably_damaging(1) TCGA-66-2770-01 5 31323023 31323023 G A CDH6 Missense_Mutation p.D661N 0.32 deleterious(0) probably_damaging(0.996) TCGA-66-2770-01 5 41382178 41382178 C A PLCXD3 Missense_Mutation p.D188Y 0.39 deleterious(0.01) benign(0.363) TCGA-66-2770-01 5 43280396 43280396 G A NIM1K Silent p.P292P 0.24 TCGA-66-2770-01 5 5306775 5306775 C A ADAMTS16 Silent p.P1115P 0.25 TCGA-66-2770-01 5 56509938 56509938 G T GPBP1 5'Flank 0.31 TCGA-66-2770-01 5 77684689 77684689 A G SCAMP1 Missense_Mutation p.N29S 0.22 tolerated(0.94) benign(0.007) TCGA-66-2770-01 5 79031918 79031918 G T CMYA5 Nonsense_Mutation p.E2444* 0.30 TCGA-66-2770-01 6 132873902 132873902 C G TAAR8 Missense_Mutation p.T24S 0.15 tolerated(0.2) benign(0.009) TCGA-66-2770-01 6 133136222 133136222 A C RPS12 Missense_Mutation p.L42F 0.35 deleterious(0.04) possibly_damaging(0.711) TCGA-66-2770-01 6 138655303 138655303 C T KIAA1244 Silent p.L1774L 0.14 TCGA-66-2770-01 6 143093952 143093952 G A HIVEP2 Missense_Mutation p.R642W 0.18 tolerated(0.18) possibly_damaging(0.614) TCGA-66-2770-01 6 146480634 146480634 C A GRM1 Missense_Mutation p.A284D 0.33 deleterious(0) possibly_damaging(0.903) TCGA-66-2770-01 6 152676045 152676045 C A SYNE1 Missense_Mutation p.V3559L 0.13 benign(0.022) TCGA-66-2770-01 6 17669736 17669736 T A NUP153 Silent p.A298A 0.18 TCGA-66-2770-01 6 28213601 28213601 G A ZKSCAN4 Nonsense_Mutation p.Q311* 0.13 TCGA-66-2770-01 6 32709279 32709279 C A HLA-DQA2 Missense_Mutation p.P20H 0.22 tolerated(0.23) benign(0.036) TCGA-66-2770-01 6 70990709 70990709 G T COL9A1 Missense_Mutation p.P304T 0.30 unknown(0) TCGA-66-2770-01 6 75797406 75797406 G A COL12A1 Missense_Mutation p.P3023L 0.14 probably_damaging(0.999) TCGA-66-2770-01 6 79725400 79725400 T C PHIP Missense_Mutation p.M446V 0.18 tolerated(0.48) benign(0.019) TCGA-66-2770-01 7 100459472 100459472 G C SLC12A9 Missense_Mutation p.L550F 0.32 tolerated(1) benign(0.001) TCGA-66-2770-01 7 100551477 100551477 A T MUC3A Silent p.T76T 0.15 TCGA-66-2770-01 7 119915250 119915250 C T KCND2 Silent p.Y188Y 0.33 TCGA-66-2770-01 7 138252234 138252234 T A TRIM24 Silent p.P513P 0.19 TCGA-66-2770-01 7 150324669 150324669 C T GIMAP6 3'UTR 0.30 TCGA-66-2770-01 7 155255319 155255319 C G EN2 Silent p.L313L 0.28 TCGA-66-2770-01 7 21598522 21598522 T C DNAH11 Missense_Mutation p.Y200H 0.41 benign(0.001) TCGA-66-2770-01 7 26729970 26729970 C A SKAP2 Missense_Mutation p.D270Y 0.24 deleterious(0) benign(0.398) TCGA-66-2770-01 7 28997605 28997605 G T AC005013.5 Intron 0.47 TCGA-66-2770-01 7 31815290 31815290 G T PDE1C Missense_Mutation p.L710I 0.38 tolerated_low_confidence(0.14) benign(0.028) TCGA-66-2770-01 7 31876849 31876849 G T PDE1C Missense_Mutation p.A443E 0.29 tolerated(0.98) possibly_damaging(0.593) TCGA-66-2770-01 7 5401610 5401610 G - TNRC18 Frame_Shift_Del p.R1484Gfs*19 0.27 TCGA-66-2770-01 7 71130396 71130396 G C WBSCR17 Missense_Mutation p.V361L 0.26 deleterious(0) probably_damaging(0.935) TCGA-66-2770-01 7 7612969 7612969 G T MIOS Missense_Mutation p.R288M 0.29 deleterious(0) probably_damaging(0.987) TCGA-66-2770-01 8 105405020 105405020 G A DPYS Nonsense_Mutation p.R479* 0.26 TCGA-66-2770-01 8 11995293 11995293 G A USP17L2 Missense_Mutation p.A326V 0.27 tolerated(0.23) benign(0.24) TCGA-66-2770-01 8 133153486 133153486 G A KCNQ3 Missense_Mutation p.A452V 0.25 tolerated(0.1) benign(0.159) TCGA-66-2770-01 8 139163563 139163563 G T FAM135B Missense_Mutation p.P1052H 0.34 deleterious(0) probably_damaging(0.999) TCGA-66-2770-01 8 24259593 24259593 T G ADAMDEC1 Missense_Mutation p.C436W 0.31 deleterious(0) probably_damaging(1) TCGA-66-2770-01 8 27690580 27690580 C T PBK Silent p.K17K 0.30 TCGA-66-2770-01 8 30706340 30706340 C G TEX15 Missense_Mutation p.S65T 0.27 tolerated(0.35) benign(0.001) TCGA-66-2770-01 8 35542230 35542230 G A UNC5D Missense_Mutation p.M294I 0.26 tolerated(0.16) benign(0.334) TCGA-66-2770-01 8 38873526 38873526 T C ADAM9 Intron 0.32 TCGA-66-2770-01 8 53452398 53452398 C G FAM150A Silent p.T106T 0.29 TCGA-66-2770-01 8 55541754 55541754 C T RP1 Missense_Mutation p.S1771L 0.12 deleterious(0) probably_damaging(1) TCGA-66-2770-01 8 57358293 57358293 C T PENK Intron 0.11 TCGA-66-2770-01 8 63659609 63659609 C A NKAIN3 Missense_Mutation p.T131K 0.37 tolerated(0.52) benign(0.392) TCGA-66-2770-01 8 67578617 67578617 C T VCPIP1 Missense_Mutation p.D193N 0.12 tolerated(0.06) possibly_damaging(0.566) TCGA-66-2770-01 8 72958829 72958829 G A TRPA1 Silent p.F660F 0.29 TCGA-66-2770-01 8 72964929 72964929 A T TRPA1 Silent p.A572A 0.26 TCGA-66-2770-01 8 87680338 87680338 G A CNGB3 Silent p.Y184Y 0.32 TCGA-66-2770-01 8 95888702 95888702 T C INTS8 Silent p.D952D 0.21 TCGA-66-2770-01 9 103340507 103340507 G T MURC Missense_Mutation p.D28Y 0.38 deleterious(0.04) probably_damaging(0.996) TCGA-66-2770-01 9 113139637 113139637 C A SVEP1 Missense_Mutation p.R3473L 0.40 benign(0.06) TCGA-66-2770-01 9 113228155 113228155 A G SVEP1 Silent p.S1104S 0.18 TCGA-66-2770-01 9 131072155 131072155 C T TRUB2 Splice_Site p.X224_splice 0.43 TCGA-66-2770-01 9 135771476 135771476 C T TSC1 3'UTR 0.32 TCGA-66-2770-01 9 138713130 138713130 C T CAMSAP1 Missense_Mutation p.S1126N 0.34 deleterious(0.03) benign(0.003) TCGA-66-2770-01 9 139397638 139397638 C A NOTCH1 Silent p.V1721V 0.41 TCGA-66-2770-01 9 139873756 139873756 G C PTGDS Intron 0.20 TCGA-66-2770-01 9 14719972 14719972 G T CER1 3'UTR 0.58 TCGA-66-2770-01 9 14719973 14719973 T A CER1 3'UTR 0.56 TCGA-66-2770-01 9 18777764 18777764 G T ADAMTSL1 Silent p.S1179S 0.52 TCGA-66-2770-01 9 21334855 21334855 T C KLHL9 Missense_Mutation p.K2E 0.45 deleterious_low_confidence(0) benign(0.04) TCGA-66-2770-01 9 37020777 37020777 A G PAX5 Missense_Mutation p.L23P 0.47 deleterious(0) probably_damaging(1) TCGA-66-2770-01 9 72000713 72000713 G T FAM189A2 Missense_Mutation p.G236W 0.29 deleterious(0.04) possibly_damaging(0.789) TCGA-66-2770-01 9 90503380 90503380 C A SPATA31E1 Silent p.I1326I 0.28 TCGA-66-2770-01 X 120181718 120181718 C A GLUD2 Silent p.R60R 0.52 TCGA-66-2770-01 X 125298951 125298951 G T DCAF12L2 Silent p.S319S 0.45 TCGA-66-2770-01 X 125298952 125298952 G T DCAF12L2 Missense_Mutation p.S319Y 0.44 deleterious(0) probably_damaging(0.966) TCGA-66-2770-01 X 153880852 153880852 A C CTAG2 Missense_Mutation p.I108S 0.57 tolerated_low_confidence(0.09) possibly_damaging(0.565) TCGA-66-2770-01 X 153880861 153880861 A G CTAG2 Missense_Mutation p.V105A 0.49 tolerated_low_confidence(1) benign(0.023) TCGA-66-2770-01 X 153880869 153880869 C T CTAG2 Silent p.A102A 0.58 TCGA-66-2770-01 X 2773036 2773036 G T GYG2 Silent p.V140V 0.66 TCGA-66-2770-01 X 29959823 29959823 T G IL1RAPL1 Silent p.L371L 0.49 TCGA-66-2770-01 X 32456493 32456494 - A DMD Frame_Shift_Ins p.L1312Ffs*8 0.50 TCGA-66-2770-01 X 92927259 92927259 T G NAP1L3 Missense_Mutation p.K349Q 0.49 deleterious(0.03) probably_damaging(0.937) TCGA-66-2771-01 10 106983002 106983002 A G SORCS3 Missense_Mutation p.T955A 0.35 tolerated(0.16) possibly_damaging(0.643) TCGA-66-2771-01 10 128153547 128153547 T C C10orf90 Missense_Mutation p.K418E 0.44 deleterious(0.05) benign(0.019) TCGA-66-2771-01 10 16893354 16893354 C A CUBN Missense_Mutation p.K3181N 0.49 tolerated(0.36) benign(0.33) TCGA-66-2771-01 10 17276799 17276799 G T VIM Silent p.V330V 0.31 TCGA-66-2771-01 10 17363099 17363099 C T ST8SIA6 Silent p.L325L 0.39 TCGA-66-2771-01 10 30602551 30602551 C G MTPAP Missense_Mutation p.S579T 0.34 deleterious_low_confidence(0.01) benign(0.33) TCGA-66-2771-01 10 38344864 38344864 A T ZNF33A Silent p.T604T 0.39 TCGA-66-2771-01 10 50819812 50819812 C G SLC18A3 Silent p.V342V 0.35 TCGA-66-2771-01 11 102649445 102649445 G T MMP10 Missense_Mutation p.H178N 0.19 tolerated(0.11) benign(0) TCGA-66-2771-01 11 114393009 114393009 A C NXPE1 Missense_Mutation p.F300C 0.24 deleterious(0) probably_damaging(0.999) TCGA-66-2771-01 11 121028813 121028813 C T TECTA Silent p.I1523I 0.22 TCGA-66-2771-01 11 123894360 123894360 T C OR10G9 Missense_Mutation p.V214A 0.20 tolerated(0.06) benign(0.012) TCGA-66-2771-01 11 124440189 124440189 C G OR8A1 Silent p.P75P 0.13 TCGA-66-2771-01 11 15243165 15243165 G A INSC Missense_Mutation p.S368N 0.21 tolerated(1) benign(0) TCGA-66-2771-01 11 57004291 57004291 G A APLNR Missense_Mutation p.S63L 0.20 tolerated(0.2) benign(0.02) TCGA-66-2771-01 11 5862605 5862605 T A OR52E6 Missense_Mutation p.I175F 0.25 deleterious(0) possibly_damaging(0.832) TCGA-66-2771-01 11 60609992 60609992 G A CCDC86 Missense_Mutation p.G132E 0.16 tolerated_low_confidence(1) benign(0.018) TCGA-66-2771-01 11 67432856 67432856 G C ALDH3B2 Silent p.G202G 0.20 TCGA-66-2771-01 11 68191058 68191058 G A LRP5 Silent p.E1043E 0.20 TCGA-66-2771-01 11 68331863 68331863 T G PPP6R3 Missense_Mutation p.L313R 0.17 deleterious(0.01) benign(0.164) TCGA-66-2771-01 11 7021527 7021527 C A ZNF214 Missense_Mutation p.V463F 0.21 deleterious(0) probably_damaging(0.936) TCGA-66-2771-01 11 92532109 92532109 A T FAT3 Missense_Mutation p.D1977V 0.10 probably_damaging(0.973) TCGA-66-2771-01 12 101680199 101680199 G C UTP20 Missense_Mutation p.E143Q 0.05 deleterious(0.05) possibly_damaging(0.864) TCGA-66-2771-01 12 102071050 102071050 G A MYBPC1 Missense_Mutation p.S989N 0.23 tolerated(0.74) benign(0.001) TCGA-66-2771-01 12 102811758 102811758 C G IGF1 Missense_Mutation p.K142N 0.08 tolerated(0.09) possibly_damaging(0.585) TCGA-66-2771-01 12 113307828 113307828 C T RPH3A Silent p.S260S 0.21 TCGA-66-2771-01 12 117669887 117669887 G A NOS1 Silent p.I1129I 0.22 TCGA-66-2771-01 12 122691663 122691663 C T B3GNT4 Missense_Mutation p.R289W 0.18 deleterious(0.03) benign(0.025) TCGA-66-2771-01 12 124220151 124220151 C G ATP6V0A2 Missense_Mutation p.R269G 0.28 deleterious(0) probably_damaging(0.999) TCGA-66-2771-01 12 133312095 133312095 C T ANKLE2 Missense_Mutation p.E533K 0.21 deleterious(0.02) benign(0.315) TCGA-66-2771-01 12 4736450 4736450 C A AKAP3 Missense_Mutation p.A540S 0.17 tolerated(0.11) probably_damaging(0.999) TCGA-66-2771-01 12 4736451 4736451 C A AKAP3 Silent p.L539L 0.17 TCGA-66-2771-01 12 53038841 53038841 C G KRT2 Missense_Mutation p.E628Q 0.06 deleterious_low_confidence(0) unknown(0) TCGA-66-2771-01 12 57594585 57594585 C T LRP1 Silent p.D3404D 0.08 TCGA-66-2771-01 12 68688952 68688952 T C MDM1 3'UTR 0.64 TCGA-66-2771-01 12 6952169 6952169 G A GNB3 Silent p.Q44Q 0.24 TCGA-66-2771-01 12 7187907 7187907 C A C1R Missense_Mutation p.G631C 0.14 deleterious(0) probably_damaging(1) TCGA-66-2771-01 12 8196573 8196573 G T FOXJ2 Missense_Mutation p.E168D 0.29 tolerated(0.51) possibly_damaging(0.871) TCGA-66-2771-01 12 9243921 9243921 G C A2M Missense_Mutation p.S782C 0.15 deleterious(0) possibly_damaging(0.656) TCGA-66-2771-01 12 98927852 98927852 C T TMPO Missense_Mutation p.S606L 0.09 deleterious_low_confidence(0) benign(0.157) TCGA-66-2771-01 13 29599703 29599703 T A MTUS2 Missense_Mutation p.S300T 0.19 tolerated(0.21) benign(0.116) TCGA-66-2771-01 14 104559906 104559906 C T ASPG Silent p.I90I 0.20 TCGA-66-2771-01 14 105411849 105411849 G A AHNAK2 Silent p.F3313F 0.04 TCGA-66-2771-01 14 20216239 20216239 C T OR4Q3 Missense_Mutation p.S218F 0.14 deleterious(0) probably_damaging(0.999) TCGA-66-2771-01 14 21548879 21548879 G T ARHGEF40 Missense_Mutation p.D812Y 0.23 deleterious(0.01) possibly_damaging(0.855) TCGA-66-2771-01 14 23889431 23889431 C A MYH7 Nonsense_Mutation p.E1117* 0.29 TCGA-66-2771-01 14 24807113 24807113 C G RIPK3 Missense_Mutation p.W266C 0.21 deleterious(0.03) possibly_damaging(0.682) TCGA-66-2771-01 14 25100203 25100203 C T GZMB 3'UTR 0.22 TCGA-66-2771-01 14 29237714 29237714 T G FOXG1 Missense_Mutation p.L410R 0.11 deleterious(0) possibly_damaging(0.452) TCGA-66-2771-01 14 32902696 32902696 C T AKAP6 5'UTR 0.27 TCGA-66-2771-01 14 34400377 34400377 G C EGLN3 Silent p.R134R 0.25 TCGA-66-2771-01 14 38061517 38061517 C T FOXA1 Missense_Mutation p.D158N 0.27 deleterious(0.04) possibly_damaging(0.59) TCGA-66-2771-01 14 47120615 47120615 C G RPL10L Missense_Mutation p.D109H 0.16 deleterious(0.03) possibly_damaging(0.459) TCGA-66-2771-01 14 70712728 70712728 G T ADAM21P1 RNA 0.09 TCGA-66-2771-01 14 72190544 72190544 G C SIPA1L1 Silent p.L1484L 0.07 TCGA-66-2771-01 14 77272759 77272759 C T ANGEL1 Silent p.K460K 0.10 TCGA-66-2771-01 14 92622903 92622903 A G CPSF2 Missense_Mutation p.D508G 0.17 tolerated(0.12) benign(0.005) TCGA-66-2771-01 14 99183521 99183521 A G C14orf177 Missense_Mutation p.I96M 0.21 tolerated_low_confidence(0.32) possibly_damaging(0.506) TCGA-66-2771-01 15 22382701 22382701 G T OR4N4 Missense_Mutation p.V77L 0.07 deleterious(0) probably_damaging(0.995) TCGA-66-2771-01 15 41280040 41280040 G A INO80 Silent p.L1235L 0.05 TCGA-66-2771-01 15 42042356 42042356 G T MGA Missense_Mutation p.R2184M 0.23 tolerated_low_confidence(0.14) benign(0.289) TCGA-66-2771-01 15 54685268 54685268 G C UNC13C Missense_Mutation p.R1579P 0.18 tolerated_low_confidence(0.73) benign(0.196) TCGA-66-2771-01 15 63967135 63967135 G T HERC1 Missense_Mutation p.H2418N 0.21 benign(0.021) TCGA-66-2771-01 15 75980675 75980675 C G CSPG4 Missense_Mutation p.E911Q 0.26 deleterious(0.05) possibly_damaging(0.829) TCGA-66-2771-01 16 20422839 20422839 G A ACSM5 Silent p.Q11Q 0.27 TCGA-66-2771-01 16 2282275 2282275 C G E4F1 Silent p.L173L 0.20 TCGA-66-2771-01 16 30100411 30100411 C T TBX6 Nonsense_Mutation p.W158* 0.12 TCGA-66-2771-01 16 30102165 30102165 C T TBX6 Silent p.P89P 0.22 TCGA-66-2771-01 16 56906359 56906359 T A SLC12A3 Missense_Mutation p.F317I 0.15 tolerated(0.13) benign(0.275) TCGA-66-2771-01 16 602926 602932 GAGAACC - CAPN15 Frame_Shift_Del p.E990Dfs*41 0.23 TCGA-66-2771-01 16 61687637 61687637 G T CDH8 Missense_Mutation p.L759I 0.14 tolerated(0.11) probably_damaging(0.992) TCGA-66-2771-01 16 67236282 67236282 C G ELMO3 Intron 0.06 TCGA-66-2771-01 16 72821790 72821790 T C ZFHX3 Missense_Mutation p.Q3462R 0.22 unknown(0) TCGA-66-2771-01 16 74497334 74497334 A C GLG1 Missense_Mutation p.L904W 0.26 deleterious(0) probably_damaging(1) TCGA-66-2771-01 16 76555068 76555068 C A CNTNAP4 Silent p.T726T 0.19 TCGA-66-2771-01 16 77328822 77328822 G A ADAMTS18 Nonsense_Mutation p.Q1002* 0.12 TCGA-66-2771-01 16 77401585 77401585 G T ADAMTS18 Silent p.L177L 0.24 TCGA-66-2771-01 16 84164038 84164038 T C HSDL1 Splice_Site p.X74_splice 0.31 TCGA-66-2771-01 16 90015915 90015915 G A DEF8 Silent p.A14A 0.18 TCGA-66-2771-01 16 9862740 9862740 C G GRIN2A Missense_Mutation p.D855H 0.17 tolerated(0.2) probably_damaging(0.964) TCGA-66-2771-01 17 16285361 16285361 G T UBB Missense_Mutation p.G47V 0.13 deleterious(0) probably_damaging(0.997) TCGA-66-2771-01 17 26603835 26603835 C T AC061975.8 5'Flank 0.31 TCGA-66-2771-01 17 40717709 40717709 C T COASY Silent p.L535L 0.12 TCGA-66-2771-01 17 48212999 48212999 C T PPP1R9B Silent p.L771L 0.24 TCGA-66-2771-01 17 48559474 48559474 G A RSAD1 Missense_Mutation p.R166Q 0.23 tolerated(0.72) benign(0.004) TCGA-66-2771-01 17 6328906 6328906 G T AIPL1 Silent p.P343P 0.26 TCGA-66-2771-01 17 76498744 76498744 C A DNAH17 Nonsense_Mutation p.E1696* 0.51 TCGA-66-2771-01 17 77043963 77043963 G - C1QTNF1 Frame_Shift_Del p.N214Tfs*6 0.31 TCGA-66-2771-01 18 21494522 21494522 A T LAMA3 Missense_Mutation p.Q2493L 0.19 possibly_damaging(0.716) TCGA-66-2771-01 18 21921529 21921529 T A OSBPL1A Missense_Mutation p.I126F 0.14 deleterious(0) possibly_damaging(0.873) TCGA-66-2771-01 18 48703809 48703809 C T MEX3C Missense_Mutation p.E298K 0.08 deleterious(0.01) probably_damaging(0.987) TCGA-66-2771-01 18 56202164 56202164 G C ALPK2 Nonsense_Mutation p.S1752* 0.11 TCGA-66-2771-01 18 5891854 5891854 G A TMEM200C Missense_Mutation p.A70V 0.38 deleterious(0) probably_damaging(0.984) TCGA-66-2771-01 18 7014032 7014032 C A LAMA1 Missense_Mutation p.V1049L 0.30 tolerated(0.18) benign(0.015) TCGA-66-2771-01 18 76754570 76754570 C G SALL3 Missense_Mutation p.T860S 0.34 tolerated(0.91) benign(0.004) TCGA-66-2771-01 19 11546831 11546831 C T PRKCSH Intron 0.17 TCGA-66-2771-01 19 18092701 18092701 G T KCNN1 Missense_Mutation p.V228L 0.19 tolerated(0.17) benign(0.014) TCGA-66-2771-01 19 31038893 31038893 G A ZNF536 Silent p.T789T 0.09 TCGA-66-2771-01 19 32971362 32971362 T A DPY19L3 Missense_Mutation p.F630I 0.29 tolerated(0.11) benign(0.056) TCGA-66-2771-01 19 36037609 36037609 G C TMEM147 Silent p.L81L 0.20 TCGA-66-2771-01 19 37100765 37100765 C T ZNF382 Intron 0.14 TCGA-66-2771-01 19 40363021 40363021 C A FCGBP Missense_Mutation p.A5017S 0.33 possibly_damaging(0.695) TCGA-66-2771-01 19 43585368 43585368 G A PSG2 Missense_Mutation p.T32I 0.10 tolerated(0.07) benign(0.011) TCGA-66-2771-01 19 49459046 49459046 C G BAX Silent p.L63L 0.23 TCGA-66-2771-01 19 51503423 51503423 A T KLK8 Missense_Mutation p.C153S 0.19 tolerated(0.58) possibly_damaging(0.671) TCGA-66-2771-01 19 52034461 52034461 C T SIGLEC6 Nonsense_Mutation p.W127* 0.17 TCGA-66-2771-01 19 53959080 53959080 G C ZNF761 RNA 0.22 TCGA-66-2771-01 19 53994939 53994939 C G ZNF813 Missense_Mutation p.H485D 0.15 deleterious(0) probably_damaging(0.999) TCGA-66-2771-01 19 54657541 54657541 C G CNOT3 Missense_Mutation p.H709Q 0.06 deleterious(0.02) possibly_damaging(0.683) TCGA-66-2771-01 19 55106815 55106815 C A LILRA1 Missense_Mutation p.N203K 0.15 tolerated(0.11) benign(0.047) TCGA-66-2771-01 19 55147900 55147900 G C AC009892.10 Intron 0.22 TCGA-66-2771-01 19 56369741 56369741 G T NLRP4 Missense_Mutation p.V328L 0.15 deleterious(0.04) benign(0.335) TCGA-66-2771-01 19 57293432 57293432 C G ZIM2 Missense_Mutation p.E179Q 0.04 tolerated(0.26) benign(0.121) TCGA-66-2771-01 19 57967431 57967431 G T VN1R1 Missense_Mutation p.L142I 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-66-2771-01 19 8181625 8181625 C T FBN3 Missense_Mutation p.M1215I 0.25 tolerated(1) benign(0) TCGA-66-2771-01 19 8491686 8491686 G A MARCH2 Missense_Mutation p.E124K 0.25 deleterious(0.03) benign(0.025) TCGA-66-2771-01 19 9048899 9048899 G A MUC16 Missense_Mutation p.T10911I 0.26 benign(0.234) TCGA-66-2771-01 19 9077694 9077694 G A MUC16 Missense_Mutation p.A3251V 0.22 unknown(0) TCGA-66-2771-01 19 9088466 9088466 C G MUC16 Missense_Mutation p.E1117Q 0.06 unknown(0) TCGA-66-2771-01 19 9453519 9453519 A C ZNF559 Silent p.P464P 0.26 TCGA-66-2771-01 1 115269613 115269613 T C CSDE1 Missense_Mutation p.I531M 0.28 tolerated(0.16) benign(0.275) TCGA-66-2771-01 1 1275504 1275504 C G DVL1 Missense_Mutation p.D275H 0.09 deleterious(0) probably_damaging(0.979) TCGA-66-2771-01 1 154227733 154227733 A C UBAP2L Missense_Mutation p.H672P 0.12 tolerated(0.05) unknown(0) TCGA-66-2771-01 1 154227736 154227736 C T UBAP2L Missense_Mutation p.S673L 0.11 tolerated(0.06) unknown(0) TCGA-66-2771-01 1 157805709 157805709 C A CD5L Nonsense_Mutation p.G98* 0.34 TCGA-66-2771-01 1 161185114 161185114 G A FCER1G Translation_Start_Site p.M1? 0.25 tolerated_low_confidence(0.06) benign(0.403) TCGA-66-2771-01 1 162468041 162468041 A T UHMK1 Missense_Mutation p.Q84L 0.19 tolerated(0.08) benign(0.257) TCGA-66-2771-01 1 162725039 162725039 G T DDR2 Missense_Mutation p.D171Y 0.19 deleterious(0) possibly_damaging(0.886) TCGA-66-2771-01 1 168260586 168260586 T G TBX19 Missense_Mutation p.F131C 0.21 tolerated(0.06) probably_damaging(1) TCGA-66-2771-01 1 171752914 171752914 G T METTL13 Missense_Mutation p.S63I 0.25 deleterious(0) probably_damaging(0.999) TCGA-66-2771-01 1 173873178 173873178 G T SERPINC1 Missense_Mutation p.A415D 0.15 deleterious(0) probably_damaging(0.933) TCGA-66-2771-01 1 175362941 175362941 C A TNR Missense_Mutation p.G444V 0.17 deleterious(0.01) probably_damaging(0.982) TCGA-66-2771-01 1 179966134 179966134 A G CEP350 Missense_Mutation p.K281R 0.24 probably_damaging(0.999) TCGA-66-2771-01 1 182873357 182873357 C T SHCBP1L Silent p.G515G 0.19 TCGA-66-2771-01 1 186017921 186017921 C T HMCN1 Missense_Mutation p.A2176V 0.38 probably_damaging(0.996) TCGA-66-2771-01 1 19181060 19181060 C T TAS1R2 Missense_Mutation p.E302K 0.14 tolerated(0.07) probably_damaging(0.918) TCGA-66-2771-01 1 193038725 193038725 G C TROVE2 Missense_Mutation p.D181H 0.14 deleterious(0) probably_damaging(1) TCGA-66-2771-01 1 206664179 206664179 A G IKBKE Missense_Mutation p.H574R 0.27 deleterious(0) probably_damaging(0.939) TCGA-66-2771-01 1 20915563 20915563 A C CDA 5'UTR 0.26 TCGA-66-2771-01 1 213186487 213186487 G A ANGEL2 Silent p.Y111Y 0.23 TCGA-66-2771-01 1 216073471 216073471 T A USH2A Missense_Mutation p.N2514Y 0.27 probably_damaging(0.998) TCGA-66-2771-01 1 216850613 216850613 C A ESRRG Missense_Mutation p.G98C 0.21 deleterious(0.01) possibly_damaging(0.711) TCGA-66-2771-01 1 218480911 218480911 G T RRP15 Missense_Mutation p.L214F 0.27 deleterious(0) probably_damaging(0.993) TCGA-66-2771-01 1 22033294 22033294 C A USP48 Missense_Mutation p.Q677H 0.23 tolerated(0.29) benign(0.017) TCGA-66-2771-01 1 229568773 229568773 C A ACTA1 Missense_Mutation p.R30S 0.19 deleterious_low_confidence(0.03) possibly_damaging(0.869) TCGA-66-2771-01 1 229568774 229568774 C A ACTA1 Missense_Mutation p.R30M 0.21 deleterious_low_confidence(0.01) probably_damaging(0.911) TCGA-66-2771-01 1 230827305 230827305 G T COG2 Nonsense_Mutation p.E704* 0.19 TCGA-66-2771-01 1 237813221 237813221 C G RYR2 Nonsense_Mutation p.Y2519* 0.12 TCGA-66-2771-01 1 242042356 242042358 GTT - EXO1 In_Frame_Del p.C608del 0.27 TCGA-66-2771-01 1 242253414 242253414 T A PLD5 Splice_Site p.X452_splice 0.22 TCGA-66-2771-01 1 247597537 247597537 G T NLRP3 Silent p.V820V 0.17 TCGA-66-2771-01 1 248525700 248525700 G T OR2T4 Missense_Mutation p.C273F 0.13 deleterious(0) probably_damaging(0.958) TCGA-66-2771-01 1 248685656 248685656 G A OR2G6 Missense_Mutation p.A237T 0.16 deleterious(0.01) benign(0.309) TCGA-66-2771-01 1 249211642 249211642 G T PGBD2 Missense_Mutation p.G287W 0.23 deleterious(0) probably_damaging(1) TCGA-66-2771-01 1 35351124 35351124 C G DLGAP3 Silent p.R623R 0.16 TCGA-66-2771-01 1 35579229 35579229 G A ZMYM1 Missense_Mutation p.E600K 0.18 tolerated(0.23) possibly_damaging(0.901) TCGA-66-2771-01 1 36202137 36202137 G A CLSPN Missense_Mutation p.S1327L 0.11 tolerated(0.15) benign(0.005) TCGA-66-2771-01 1 36479647 36479647 G C AGO3 Missense_Mutation p.L468F 0.06 deleterious(0.01) possibly_damaging(0.802) TCGA-66-2771-01 1 36788602 36788602 T G EVA1B Missense_Mutation p.N13H 0.26 deleterious(0.04) benign(0.011) TCGA-66-2771-01 1 45484503 45484503 T G ZSWIM5 Missense_Mutation p.I1061L 0.27 tolerated(0.13) unknown(0) TCGA-66-2771-01 1 48771547 48771547 C A SPATA6 Nonsense_Mutation p.E400* 0.24 TCGA-66-2771-01 1 52811902 52811902 G C ZFYVE9 3'UTR 0.21 TCGA-66-2771-01 1 53676146 53676146 C G CPT2 Missense_Mutation p.S267W 0.06 deleterious(0) probably_damaging(0.941) TCGA-66-2771-01 1 70504896 70504896 C T LRRC7 Missense_Mutation p.S1092F 0.31 tolerated(0.05) probably_damaging(0.996) TCGA-66-2771-01 1 70518754 70518754 G T LRRC7 Missense_Mutation p.V1348L 0.21 tolerated(0.09) benign(0.001) TCGA-66-2771-01 1 70703161 70703161 C G SRSF11 Missense_Mutation p.S215C 0.27 deleterious(0) unknown(0) TCGA-66-2771-01 1 76254884 76254884 A T RABGGTB Missense_Mutation p.Y51F 0.23 deleterious(0.02) benign(0.375) TCGA-66-2771-01 1 76387905 76387905 T G ASB17 Missense_Mutation p.I181L 0.19 tolerated(0.15) benign(0.002) TCGA-66-2771-01 1 7725174 7725174 C T CAMTA1 Missense_Mutation p.S856L 0.19 tolerated_low_confidence(0.29) benign(0.054) TCGA-66-2771-01 1 82436211 82436211 G C LPHN2 Missense_Mutation p.E966Q 0.26 tolerated(0.26) benign(0.005) TCGA-66-2771-01 1 86590590 86590590 C A COL24A1 Missense_Mutation p.D477Y 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-66-2771-01 20 25261661 25261661 G T PYGB Missense_Mutation p.R439L 0.19 deleterious(0.03) possibly_damaging(0.592) TCGA-66-2771-01 20 58545157 58545157 A T CDH26 Silent p.L49L 0.26 TCGA-66-2771-01 21 16337633 16337633 T C NRIP1 Missense_Mutation p.K961E 0.21 tolerated(0.2) benign(0.438) TCGA-66-2771-01 21 31709628 31709628 C G KRTAP27-1 Missense_Mutation p.S120T 0.06 tolerated(0.12) benign(0.015) TCGA-66-2771-01 21 46702293 46702293 C G POFUT2 Silent p.A203A 0.31 TCGA-66-2771-01 22 31927072 31927072 T C SFI1 Missense_Mutation p.W99R 0.28 deleterious(0) probably_damaging(0.999) TCGA-66-2771-01 22 45768156 45768156 A T SMC1B Missense_Mutation p.L692H 0.26 tolerated(0.06) possibly_damaging(0.601) TCGA-66-2771-01 22 51008055 51008055 C T CPT1B Missense_Mutation p.E729K 0.12 deleterious(0) possibly_damaging(0.662) TCGA-66-2771-01 2 109513383 109513383 G A EDAR Nonsense_Mutation p.Q443* 0.38 TCGA-66-2771-01 2 114195465 114195465 C G CBWD2 Missense_Mutation p.S7C 0.19 tolerated_low_confidence(0.18) benign(0.001) TCGA-66-2771-01 2 115200401 115200401 T A DPP10 Missense_Mutation p.S16T 0.18 tolerated(0.62) benign(0) TCGA-66-2771-01 2 118715998 118715998 G C CCDC93 Silent p.R316R 0.18 TCGA-66-2771-01 2 120383210 120383210 G T PCDP1 Missense_Mutation p.D488Y 0.11 deleterious(0.03) benign(0.359) TCGA-66-2771-01 2 122485356 122485356 C G NIFK Missense_Mutation p.E276Q 0.07 deleterious(0.03) benign(0.005) TCGA-66-2771-01 2 125547543 125547543 G A CNTNAP5 Silent p.Q938Q 0.20 TCGA-66-2771-01 2 128775348 128775348 T A SAP130 Missense_Mutation p.H111L 0.31 tolerated_low_confidence(0.33) benign(0.327) TCGA-66-2771-01 2 141110606 141110606 G A LRP1B Missense_Mutation p.H3856Y 0.19 benign(0.415) TCGA-66-2771-01 2 141113992 141113992 A G LRP1B Missense_Mutation p.Y3817H 0.14 benign(0.403) TCGA-66-2771-01 2 141294240 141294240 A T LRP1B Missense_Mutation p.C2518S 0.17 benign(0.415) TCGA-66-2771-01 2 145158874 145158874 G T ZEB2 Missense_Mutation p.H270N 0.13 tolerated(0.06) probably_damaging(0.978) TCGA-66-2771-01 2 157436286 157436286 A C GPD2 Missense_Mutation p.N682H 0.33 tolerated(0.15) benign(0.002) TCGA-66-2771-01 2 162929976 162929976 C A DPP4 Silent p.L9L 0.28 TCGA-66-2771-01 2 166856244 166856244 C G SCN1A Missense_Mutation p.D1443H 0.08 deleterious(0) probably_damaging(1) TCGA-66-2771-01 2 168105057 168105057 G A XIRP2 Silent p.P2385P 0.21 TCGA-66-2771-01 2 168726562 168726562 T C B3GALT1 3'UTR 0.24 TCGA-66-2771-01 2 170592730 170592730 G C KLHL23 Missense_Mutation p.M402I 0.25 deleterious(0.01) probably_damaging(0.992) TCGA-66-2771-01 2 179396364 179396364 G A TTN Missense_Mutation p.T34993M 0.19 TCGA-66-2771-01 2 179396750 179396750 C T TTN Silent p.P34864P 0.23 TCGA-66-2771-01 2 179611100 179611100 T C TTN Intron 0.19 TCGA-66-2771-01 2 179640092 179640092 G T TTN Missense_Mutation p.L2167I 0.15 TCGA-66-2771-01 2 179664420 179664420 T A TTN Silent p.T236T 0.23 TCGA-66-2771-01 2 206630227 206630227 A T NRP2 Silent p.G779G 0.19 TCGA-66-2771-01 2 219082149 219082149 C A ARPC2 5'UTR 0.32 TCGA-66-2771-01 2 220420739 220420739 C G OBSL1 Intron 0.13 TCGA-66-2771-01 2 223066619 223066619 C G PAX3 Intron 0.29 TCGA-66-2771-01 2 233899557 233899557 C G NEU2 Silent p.L311L 0.08 TCGA-66-2771-01 2 277020 277020 G C ACP1 Missense_Mutation p.A112P 0.33 deleterious(0.02) probably_damaging(1) TCGA-66-2771-01 2 28634924 28634928 AGCGC - FOSL2 Frame_Shift_Del p.E197Afs*60 0.31 TCGA-66-2771-01 2 29240096 29240096 G T FAM179A Missense_Mutation p.R374M 0.11 deleterious(0.03) benign(0.133) TCGA-66-2771-01 2 56097912 56097912 G A EFEMP1 Silent p.N421N 0.09 TCGA-66-2771-01 2 62228088 62228088 A G COMMD1 Missense_Mutation p.I145V 0.26 tolerated(1) benign(0.004) TCGA-66-2771-01 3 107885739 107885739 C A IFT57 Missense_Mutation p.V315F 0.29 deleterious(0.01) possibly_damaging(0.595) TCGA-66-2771-01 3 119134765 119134765 C T ARHGAP31 Missense_Mutation p.S1330F 0.07 deleterious(0) possibly_damaging(0.83) TCGA-66-2771-01 3 121208732 121208732 C A POLQ Missense_Mutation p.V1016F 0.12 deleterious_low_confidence(0.01) benign(0.405) TCGA-66-2771-01 3 130871272 130871272 C G NEK11 Missense_Mutation p.H230D 0.19 deleterious(0) probably_damaging(0.998) TCGA-66-2771-01 3 142178212 142178212 T A ATR Silent p.T2402T 0.29 TCGA-66-2771-01 3 142279163 142279163 C T ATR Missense_Mutation p.V495I 0.27 tolerated_low_confidence(0.28) benign(0.001) TCGA-66-2771-01 3 16327951 16327951 C T OXNAD1 Nonsense_Mutation p.Q96* 0.28 TCGA-66-2771-01 3 164756916 164756916 C A SI Missense_Mutation p.D751Y 0.40 deleterious(0) benign(0.408) TCGA-66-2771-01 3 179334808 179334808 C T NDUFB5 Silent p.V106V 0.45 TCGA-66-2771-01 3 183976098 183976098 G C ECE2 Intron 0.06 TCGA-66-2771-01 3 194079953 194079953 G T LRRC15 3'UTR 0.25 TCGA-66-2771-01 3 196612846 196612846 G A SENP5 Missense_Mutation p.R265Q 0.21 tolerated(0.21) benign(0.012) TCGA-66-2771-01 3 196654687 196654687 G A SENP5 Silent p.L681L 0.17 TCGA-66-2771-01 3 49899787 49899787 T C CAMKV Missense_Mutation p.K12R 0.33 tolerated(0.17) benign(0.065) TCGA-66-2771-01 3 50617290 50617290 G T HEMK1 Silent p.A262A 0.30 TCGA-66-2771-01 3 52858551 52858551 C A ITIH4 Missense_Mutation p.D303Y 0.30 deleterious(0) probably_damaging(1) TCGA-66-2771-01 4 110791573 110791573 A T LRIT3 Silent p.P556P 0.13 TCGA-66-2771-01 4 110865119 110865119 G C EGF Missense_Mutation p.D211H 0.27 deleterious(0) benign(0.091) TCGA-66-2771-01 4 122682747 122682747 G T TMEM155 Missense_Mutation p.A53E 0.08 deleterious(0.01) benign(0.075) TCGA-66-2771-01 4 126328188 126328188 C T FAT4 Nonsense_Mutation p.Q1821* 0.07 TCGA-66-2771-01 4 186545038 186545038 G A SORBS2 Silent p.S611S 0.07 TCGA-66-2771-01 4 187171402 187171402 C T KLKB1 Missense_Mutation p.H202Y 0.21 tolerated(0.22) benign(0.251) TCGA-66-2771-01 4 56886856 56886856 G T CEP135 Missense_Mutation p.R1077L 0.12 deleterious(0.01) possibly_damaging(0.893) TCGA-66-2771-01 4 57361544 57361544 G A SRP72 Silent p.K554K 0.16 TCGA-66-2771-01 4 68928863 68928863 G T TMPRSS11F Intron 0.14 TCGA-66-2771-01 4 69512834 69512834 C T UGT2B15 Silent p.K527K 0.18 TCGA-66-2771-01 4 7056395 7056395 C T TADA2B Missense_Mutation p.R293W 0.11 deleterious(0) possibly_damaging(0.893) TCGA-66-2771-01 4 71232643 71232643 C G SMR3A Missense_Mutation p.P113A 0.18 tolerated_low_confidence(0.68) unknown(0) TCGA-66-2771-01 4 71255629 71255629 C A SMR3B 3'UTR 0.16 TCGA-66-2771-01 4 71255630 71255630 C T SMR3B 3'UTR 0.18 TCGA-66-2771-01 4 80328533 80328533 T A GK2 Missense_Mutation p.Q274H 0.17 deleterious(0.01) possibly_damaging(0.731) TCGA-66-2771-01 4 99064295 99064295 C T STPG2 Missense_Mutation p.D3N 0.20 deleterious(0.02) benign(0.132) TCGA-66-2771-01 5 10410379 10410379 G C MARCH6 Missense_Mutation p.G561A 0.07 tolerated(0.94) benign(0.021) TCGA-66-2771-01 5 121356289 121356289 A G SRFBP1 Missense_Mutation p.I287V 0.28 deleterious(0.01) benign(0.11) TCGA-66-2771-01 5 1341845 1341845 T C CLPTM1L Missense_Mutation p.T132A 0.14 tolerated(0.34) benign(0.049) TCGA-66-2771-01 5 140208830 140208830 T C PCDHA6 Missense_Mutation p.V385A 0.24 deleterious_low_confidence(0) possibly_damaging(0.828) TCGA-66-2771-01 5 140209110 140209110 T C PCDHA6 Silent p.S478S 0.23 TCGA-66-2771-01 5 153078507 153078507 G C GRIA1 Silent p.L452L 0.24 TCGA-66-2771-01 5 160059368 160059368 C T ATP10B Missense_Mutation p.R463Q 0.28 deleterious(0) probably_damaging(1) TCGA-66-2771-01 5 16694532 16694532 C G MYO10 Missense_Mutation p.E1250Q 0.05 deleterious(0.01) probably_damaging(0.996) TCGA-66-2771-01 5 35644570 35644570 G A SPEF2 Silent p.E176E 0.23 TCGA-66-2771-01 5 45645292 45645292 C T HCN1 Missense_Mutation p.E282K 0.25 deleterious(0.01) possibly_damaging(0.655) TCGA-66-2771-01 5 95728693 95728693 C T PCSK1 3'UTR 0.19 TCGA-66-2771-01 5 95728791 95728791 C T PCSK1 Missense_Mutation p.D726N 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-66-2771-01 5 98228350 98228350 G T CHD1 Missense_Mutation p.H687N 0.27 deleterious(0) probably_damaging(1) TCGA-66-2771-01 6 105224980 105224980 T G HACE1 Missense_Mutation p.I562L 0.27 tolerated(0.32) benign(0.001) TCGA-66-2771-01 6 107050751 107050751 G C RTN4IP1 Missense_Mutation p.Q223E 0.22 deleterious(0) probably_damaging(0.998) TCGA-66-2771-01 6 118635205 118635205 T A SLC35F1 Nonsense_Mutation p.Y339* 0.16 TCGA-66-2771-01 6 138202416 138202416 A G TNFAIP3 Missense_Mutation p.Y778C 0.22 deleterious(0) probably_damaging(0.997) TCGA-66-2771-01 6 152163866 152163866 A G ESR1 Missense_Mutation p.H196R 0.24 deleterious(0) probably_damaging(0.998) TCGA-66-2771-01 6 152466691 152466691 C A SYNE1 Intron 0.24 TCGA-66-2771-01 6 152725365 152725365 T C SYNE1 Missense_Mutation p.T2270A 0.15 benign(0.028) TCGA-66-2771-01 6 154360761 154360761 C T OPRM1 Missense_Mutation p.P121S 0.28 tolerated(0.23) benign(0.006) TCGA-66-2771-01 6 160212095 160212095 T C MRPL18 Missense_Mutation p.L59S 0.16 deleterious(0) probably_damaging(0.94) TCGA-66-2771-01 6 29695871 29695871 T C HLA-F 3'Flank 0.28 TCGA-66-2771-01 6 33154404 33154404 C A COL11A2 Missense_Mutation p.Q266H 0.31 probably_damaging(0.989) TCGA-66-2771-01 6 64421795 64421795 A G PHF3 Silent p.P1437P 0.25 TCGA-66-2771-01 6 66205243 66205243 C A EYS Nonsense_Mutation p.G21* 0.24 TCGA-66-2771-01 6 70866115 70866115 G T COL19A1 Missense_Mutation p.A726S 0.35 tolerated(0.07) benign(0.114) TCGA-66-2771-01 6 76022993 76022993 A G FILIP1 Missense_Mutation p.V852A 0.26 tolerated(0.15) benign(0.036) TCGA-66-2771-01 6 84772654 84772654 T C MRAP2 Missense_Mutation p.V57A 0.11 deleterious(0) probably_damaging(0.99) TCGA-66-2771-01 6 89888456 89888456 A G GABRR1 3'UTR 0.28 TCGA-66-2771-01 6 97058603 97058603 C T FHL5 Silent p.N220N 0.22 TCGA-66-2771-01 7 100682937 100682937 G A MUC17 Missense_Mutation p.S2747N 0.31 unknown(0) TCGA-66-2771-01 7 106508577 106508577 C A PIK3CG Missense_Mutation p.R191S 0.33 deleterious(0) probably_damaging(1) TCGA-66-2771-01 7 107572753 107572753 C T LAMB1 Missense_Mutation p.E1420K 0.14 deleterious(0.04) benign(0.064) TCGA-66-2771-01 7 107743501 107743501 A T LAMB4 Missense_Mutation p.Y390N 0.16 tolerated(1) benign(0.41) TCGA-66-2771-01 7 107743502 107743502 G A LAMB4 Silent p.P389P 0.16 TCGA-66-2771-01 7 112472715 112472715 T G C7orf60 Silent p.S163S 0.27 TCGA-66-2771-01 7 132709346 132709346 C A CHCHD3 Missense_Mutation p.A71S 0.26 deleterious(0.02) possibly_damaging(0.461) TCGA-66-2771-01 7 139529152 139529152 C T TBXAS1 5'UTR 0.22 TCGA-66-2771-01 7 149129570 149129570 A T ZNF777 Missense_Mutation p.V598E 0.21 tolerated(0.13) benign(0.1) TCGA-66-2771-01 7 150217426 150217426 T A GIMAP7 Missense_Mutation p.S122T 0.09 tolerated(0.15) benign(0.038) TCGA-66-2771-01 7 150269977 150269977 A G GIMAP4 Silent p.E273E 0.13 TCGA-66-2771-01 7 37136261 37136261 G T ELMO1 Silent p.T421T 0.19 TCGA-66-2771-01 7 38402587 38402587 C G TRGV2 Missense_Mutation p.E78Q 0.24 tolerated(0.11) benign(0.318) TCGA-66-2771-01 7 50660564 50660564 G A GRB10 3'UTR 0.23 TCGA-66-2771-01 7 65429349 65429349 C A GUSB Nonsense_Mutation p.E584* 0.20 TCGA-66-2771-01 7 66270167 66270167 G A KCTD7 Silent p.K287K 0.31 TCGA-66-2771-01 7 79846672 79846672 C G GNAI1 Missense_Mutation p.L310V 0.21 deleterious(0.02) benign(0.265) TCGA-66-2771-01 7 88963668 88963668 C A ZNF804B Missense_Mutation p.P458T 0.18 deleterious(0) probably_damaging(1) TCGA-66-2771-01 8 105361034 105361034 T C DCSTAMP Missense_Mutation p.V85A 0.32 tolerated(0.17) benign(0.001) TCGA-66-2771-01 8 113246625 113246625 A G CSMD3 Missense_Mutation p.M3570T 0.20 deleterious(0) benign(0.007) TCGA-66-2771-01 8 120940736 120940736 G A DEPTOR Silent p.L73L 0.09 TCGA-66-2771-01 8 123963948 123963948 G T ZHX2 Missense_Mutation p.M66I 0.16 tolerated(0.49) benign(0.005) TCGA-66-2771-01 8 131812807 131812807 A T ADCY8 Silent p.S975S 0.19 TCGA-66-2771-01 8 134042191 134042191 G C TG Missense_Mutation p.G2388R 0.18 deleterious(0) probably_damaging(0.998) TCGA-66-2771-01 8 143996220 143996220 T G CYP11B2 Missense_Mutation p.T234P 0.43 deleterious(0) probably_damaging(0.999) TCGA-66-2771-01 8 145109735 145109735 C G OPLAH Missense_Mutation p.D831H 0.22 deleterious(0) probably_damaging(1) TCGA-66-2771-01 8 22548883 22548883 G A EGR3 Silent p.F89F 0.29 TCGA-66-2771-01 8 25317909 25317909 C G CDCA2 Missense_Mutation p.S24C 0.18 deleterious(0.01) probably_damaging(0.971) TCGA-66-2771-01 8 55542146 55542146 C T RP1 Nonsense_Mutation p.Q1902* 0.10 TCGA-66-2771-01 8 59058961 59058961 A T FAM110B Nonsense_Mutation p.K58* 0.32 TCGA-66-2771-01 8 72963055 72963055 A T TRPA1 Nonsense_Mutation p.C621* 0.12 TCGA-66-2771-01 8 75275277 75275277 A G GDAP1 Missense_Mutation p.E228G 0.19 tolerated(0.27) probably_damaging(0.971) TCGA-66-2771-01 8 77761266 77761266 G T ZFHX4 Missense_Mutation p.V1183L 0.27 benign(0.198) TCGA-66-2771-01 8 77765710 77765710 C A ZFHX4 Silent p.R2185R 0.07 TCGA-66-2771-01 8 86572811 86572811 G C REXO1L1P 3'UTR 0.12 TCGA-66-2771-01 8 87679237 87679237 C T CNGB3 Silent p.A256A 0.13 TCGA-66-2771-01 8 93088349 93088349 C A RUNX1T1 Intron 0.31 TCGA-66-2771-01 9 100433431 100433431 G C NCBP1 Missense_Mutation p.D775H 0.20 deleterious(0) probably_damaging(1) TCGA-66-2771-01 9 107380010 107380010 T C OR13C9 Missense_Mutation p.Q159R 0.32 deleterious(0) probably_damaging(0.996) TCGA-66-2771-01 9 139726208 139726208 T G RABL6 Missense_Mutation p.V165G 0.38 deleterious(0) probably_damaging(0.982) TCGA-66-2771-01 9 14307382 14307382 T A NFIB Silent p.A56A 0.25 TCGA-66-2771-01 9 17795757 17795757 G T SH3GL2 3'UTR 0.38 TCGA-66-2771-01 9 27206656 27206656 C A TEK Missense_Mutation p.T814K 0.56 deleterious(0) benign(0.005) TCGA-66-2771-01 9 36846882 36846882 A T PAX5 Missense_Mutation p.S353T 0.35 tolerated(1) benign(0.006) TCGA-66-2771-01 9 5066761 5066761 A G JAK2 Missense_Mutation p.N433S 0.36 deleterious(0.02) benign(0.243) TCGA-66-2771-01 X 125685932 125685932 C - DCAF12L1 Frame_Shift_Del p.W220Cfs*93 0.42 TCGA-66-2771-01 X 140996085 140996085 G A MAGEC1 Silent p.L965L 0.07 TCGA-66-2771-01 X 153416372 153416372 C T OPN1LW Silent p.F119F 0.14 TCGA-66-2771-01 X 15565027 15565027 C T BMX Missense_Mutation p.S593L 0.17 deleterious(0) probably_damaging(1) TCGA-66-2771-01 X 2408626 2408626 G C ZBED1 Missense_Mutation p.I45M 0.31 deleterious(0.01) probably_damaging(1) TCGA-66-2771-01 X 24197618 24197618 C A ZFX Nonsense_Mutation p.S126* 0.14 TCGA-66-2771-01 X 48340063 48340063 C T FTSJ1 Silent p.F205F 0.60 TCGA-66-2771-01 X 54957228 54957228 C T TRO Silent p.F1357F 0.41 TCGA-66-2771-01 X 65417698 65417698 G A HEPH Missense_Mutation p.V613M 0.60 deleterious(0) probably_damaging(0.993) TCGA-66-2771-01 X 69561758 69561758 C T KIF4A Nonsense_Mutation p.Q415* 0.07 TCGA-66-2771-01 X 73524496 73524496 G A ZCCHC13 Missense_Mutation p.R132Q 0.47 deleterious(0.01) probably_damaging(0.986) TCGA-66-2771-01 X 79286003 79286003 G A TBX22 Missense_Mutation p.S319N 0.33 tolerated(0.11) possibly_damaging(0.878) TCGA-66-2773-01 10 101911983 101911983 C G ERLIN1 Missense_Mutation p.D318H 0.17 deleterious_low_confidence(0.04) benign(0.145) TCGA-66-2773-01 10 102799340 102799340 T C SFXN3 Nonstop_Mutation p.*326Rext*42 0.19 TCGA-66-2773-01 10 105163037 105163037 C T PDCD11 Silent p.L133L 0.05 TCGA-66-2773-01 10 106916948 106916948 T A SORCS3 Missense_Mutation p.V512E 0.20 deleterious(0) probably_damaging(0.934) TCGA-66-2773-01 10 127524684 127524684 C G BCCIP Intron 0.05 TCGA-66-2773-01 10 13228254 13228254 G A MCM10 Missense_Mutation p.E398K 0.13 tolerated(0.13) possibly_damaging(0.515) TCGA-66-2773-01 10 15138466 15138466 G C C10orf111 Missense_Mutation p.L120V 0.13 tolerated_low_confidence(0.24) probably_damaging(0.982) TCGA-66-2773-01 10 21804495 21804495 G C SKIDA1 Missense_Mutation p.Q753E 0.17 tolerated(0.1) unknown(0) TCGA-66-2773-01 10 22002880 22002880 G T MLLT10 Splice_Site p.X626_splice 0.38 TCGA-66-2773-01 10 31133898 31133898 C G ZNF438 Missense_Mutation p.E827Q 0.15 tolerated(0.06) benign(0.02) TCGA-66-2773-01 10 37454038 37454038 A C ANKRD30A Silent p.S617S 0.23 TCGA-66-2773-01 10 44053157 44053157 C T ZNF239 Missense_Mutation p.G124E 0.13 tolerated(0.4) benign(0.001) TCGA-66-2773-01 10 55626488 55626488 G T PCDH15 Missense_Mutation p.H1211N 0.17 tolerated(0.23) benign(0.348) TCGA-66-2773-01 10 56138598 56138598 C A PCDH15 Missense_Mutation p.D88Y 0.21 deleterious(0) probably_damaging(0.993) TCGA-66-2773-01 10 5682753 5682753 C T ASB13 Silent p.L250L 0.18 TCGA-66-2773-01 10 61835776 61835776 G A ANK3 Silent p.S1621S 0.18 TCGA-66-2773-01 10 70143566 70143566 G A RUFY2 Nonsense_Mutation p.Q345* 0.05 TCGA-66-2773-01 10 70405228 70405228 G C TET1 Missense_Mutation p.E914D 0.05 tolerated(0.12) possibly_damaging(0.772) TCGA-66-2773-01 10 70641797 70641797 G A STOX1 Missense_Mutation p.D132N 0.21 deleterious(0) probably_damaging(1) TCGA-66-2773-01 10 71678056 71678056 G T COL13A1 Missense_Mutation p.A338S 0.18 tolerated(0.27) benign(0.095) TCGA-66-2773-01 10 7262427 7262427 A G SFMBT2 Missense_Mutation p.C426R 0.31 deleterious(0) probably_damaging(0.977) TCGA-66-2773-01 10 75013854 75013854 G T TTC18 Intron 0.15 TCGA-66-2773-01 10 871222 871222 G C LARP4B Missense_Mutation p.P423A 0.11 deleterious(0.03) possibly_damaging(0.559) TCGA-66-2773-01 10 95791854 95791854 C G PLCE1 Missense_Mutation p.L351V 0.10 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-66-2773-01 10 96824616 96824616 G C CYP2C8 Missense_Mutation p.L195V 0.06 deleterious(0.04) possibly_damaging(0.454) TCGA-66-2773-01 11 105769141 105769141 G C GRIA4 Missense_Mutation p.E291D 0.10 tolerated(0.77) benign(0.007) TCGA-66-2773-01 11 113628514 113628514 C T ZW10 Silent p.V265V 0.09 TCGA-66-2773-01 11 117314735 117314735 C T DSCAML1 Silent p.T1303T 0.09 TCGA-66-2773-01 11 118074365 118074365 G C AMICA1 Missense_Mutation p.R184G 0.14 tolerated(0.26) possibly_damaging(0.591) TCGA-66-2773-01 11 119535588 119535588 C T PVRL1 Missense_Mutation p.E475K 0.13 deleterious_low_confidence(0.01) benign(0.207) TCGA-66-2773-01 11 123909586 123909586 G A OR10G7 Silent p.L41L 0.12 TCGA-66-2773-01 11 124637776 124637776 C T MSANTD2 Missense_Mutation p.E274K 0.05 deleterious_low_confidence(0.03) possibly_damaging(0.736) TCGA-66-2773-01 11 128350330 128350330 C A ETS1 Missense_Mutation p.Q293H 0.19 tolerated(0.43) probably_damaging(0.986) TCGA-66-2773-01 11 130343473 130343473 C T ADAMTS15 Silent p.A870A 0.11 TCGA-66-2773-01 11 133789895 133789895 G A IGSF9B Missense_Mutation p.P1242L 0.14 deleterious_low_confidence(0) possibly_damaging(0.873) TCGA-66-2773-01 11 18955535 18955535 C A MRGPRX1 Missense_Mutation p.S266I 0.19 deleterious(0) probably_damaging(0.971) TCGA-66-2773-01 11 20691193 20691193 G A NELL1 5'UTR 0.11 TCGA-66-2773-01 11 22399019 22399019 T A SLC17A6 Nonsense_Mutation p.Y494* 0.20 TCGA-66-2773-01 11 22646528 22646528 G C FANCF Missense_Mutation p.L277V 0.07 tolerated(0.06) benign(0.106) TCGA-66-2773-01 11 2337820 2337820 C G TSPAN32 Silent p.L214L 0.09 TCGA-66-2773-01 11 2426050 2426050 C T TRPM5 3'UTR 0.24 TCGA-66-2773-01 11 33566811 33566811 G A KIAA1549L Missense_Mutation p.R794Q 0.15 tolerated(0.58) benign(0.001) TCGA-66-2773-01 11 43284714 43284714 A T HNRNPKP3 RNA 0.19 TCGA-66-2773-01 11 47595120 47595120 C A KBTBD4 Missense_Mutation p.D323Y 0.25 tolerated(0.07) possibly_damaging(0.899) TCGA-66-2773-01 11 48347278 48347278 C G OR4C3 Silent p.L262L 0.11 TCGA-66-2773-01 11 4967563 4967563 G T OR51A4 Silent p.I256I 0.12 TCGA-66-2773-01 11 51412240 51412240 G A OR4A5 Silent p.S52S 0.13 TCGA-66-2773-01 11 5474948 5474948 C A OR51I2 Missense_Mutation p.T77K 0.20 deleterious(0) probably_damaging(0.997) TCGA-66-2773-01 11 5536292 5536292 C T UBQLNL Silent p.L460L 0.15 TCGA-66-2773-01 11 5537009 5537009 G A UBQLNL Silent p.I221I 0.04 TCGA-66-2773-01 11 55703274 55703274 G T OR5I1 Silent p.L201L 0.18 TCGA-66-2773-01 11 55904716 55904716 G A OR8J3 Missense_Mutation p.S160L 0.14 deleterious(0) possibly_damaging(0.515) TCGA-66-2773-01 11 56128355 56128355 G A OR8J1 Silent p.L211L 0.08 TCGA-66-2773-01 11 56467891 56467891 G A OR9G1 Missense_Mutation p.E10K 0.13 tolerated(0.06) benign(0.03) TCGA-66-2773-01 11 60229890 60229890 G A MS4A1 Missense_Mutation p.E15K 0.06 tolerated(0.36) benign(0.175) TCGA-66-2773-01 11 6221263 6221263 T C OR52W1 Silent p.G270G 0.19 TCGA-66-2773-01 11 6260661 6260661 G T CNGA4 Missense_Mutation p.W37L 0.16 deleterious(0) possibly_damaging(0.77) TCGA-66-2773-01 11 62782428 62782428 C T SLC22A8 Translation_Start_Site p.M1? 0.15 deleterious(0) probably_damaging(0.985) TCGA-66-2773-01 11 63884157 63884157 C T FLRT1 Missense_Mutation p.R140C 0.13 deleterious(0) probably_damaging(0.994) TCGA-66-2773-01 11 64009984 64009984 G A FKBP2 Missense_Mutation p.C42Y 0.05 deleterious(0) probably_damaging(1) TCGA-66-2773-01 11 64822077 64822077 C T NAALADL1 Missense_Mutation p.R246Q 0.12 deleterious(0) probably_damaging(0.992) TCGA-66-2773-01 11 65397112 65397112 C T PCNXL3 Silent p.F1374F 0.23 TCGA-66-2773-01 11 65664331 65664331 G A FOSL1 Silent p.V82V 0.13 TCGA-66-2773-01 11 65714963 65714963 G A TSGA10IP RNA 0.14 TCGA-66-2773-01 11 65779526 65779526 C G CST6 Missense_Mutation p.S4W 0.28 tolerated(0.05) benign(0.192) TCGA-66-2773-01 11 66191327 66191327 C T NPAS4 Silent p.L322L 0.06 TCGA-66-2773-01 11 66360524 66360524 G A CCDC87 5'UTR 0.19 TCGA-66-2773-01 11 67434384 67434384 G C ALDH3B2 Missense_Mutation p.T8R 0.03 tolerated(0.22) benign(0.004) TCGA-66-2773-01 11 70319419 70319419 G A SHANK2 Missense_Mutation p.S1703L 0.05 tolerated(0.25) benign(0.307) TCGA-66-2773-01 11 7334650 7334650 C T SYT9 Silent p.L174L 0.18 TCGA-66-2773-01 11 74351706 74351706 G T POLD3 Silent p.V432V 0.15 TCGA-66-2773-01 11 74351707 74351707 A G POLD3 Missense_Mutation p.K433E 0.15 tolerated(0.07) possibly_damaging(0.672) TCGA-66-2773-01 11 8476290 8476290 C - STK33 Splice_Site p.X262_splice 0.13 TCGA-66-2773-01 11 87908475 87908475 G C RAB38 Missense_Mutation p.I26M 0.10 deleterious(0) probably_damaging(1) TCGA-66-2773-01 11 87908575 87908575 C G RAB38 5'UTR 0.22 TCGA-66-2773-01 11 88911287 88911287 C T TYR Nonsense_Mutation p.Q56* 0.19 TCGA-66-2773-01 11 88911641 88911641 G A TYR Missense_Mutation p.D174N 0.16 tolerated(0.68) benign(0.311) TCGA-66-2773-01 11 94113828 94113828 G T GPR83 Silent p.L253L 0.17 TCGA-66-2773-01 12 100452393 100452393 C T UHRF1BP1L Missense_Mutation p.E888K 0.08 deleterious(0.02) benign(0.008) TCGA-66-2773-01 12 100732771 100732771 C A SCYL2 Missense_Mutation p.P871T 0.05 tolerated_low_confidence(0.19) benign(0.007) TCGA-66-2773-01 12 100732772 100732772 C T SCYL2 Missense_Mutation p.P871L 0.05 tolerated_low_confidence(0.18) benign(0.118) TCGA-66-2773-01 12 100897181 100897181 C T NR1H4 Nonsense_Mutation p.Q6* 0.23 TCGA-66-2773-01 12 10151638 10151638 G T CLEC1B Missense_Mutation p.S21Y 0.11 deleterious(0) probably_damaging(0.968) TCGA-66-2773-01 12 101587418 101587418 C A SLC5A8 Missense_Mutation p.R226I 0.29 deleterious(0) probably_damaging(1) TCGA-66-2773-01 12 101684541 101684541 C A UTP20 Missense_Mutation p.P256T 0.10 deleterious(0.01) probably_damaging(1) TCGA-66-2773-01 12 101685877 101685877 G C UTP20 Missense_Mutation p.E390Q 0.03 tolerated(0.44) benign(0.005) TCGA-66-2773-01 12 101988866 101988866 G T MYBPC1 Missense_Mutation p.K6N 0.08 deleterious(0.01) benign(0.051) TCGA-66-2773-01 12 103695841 103695841 G A C12orf42 3'UTR 0.06 TCGA-66-2773-01 12 103695942 103695942 G A C12orf42 Missense_Mutation p.H343Y 0.25 deleterious(0) probably_damaging(0.986) TCGA-66-2773-01 12 104721446 104721446 C G TXNRD1 Silent p.V513V 0.12 TCGA-66-2773-01 12 107236590 107236590 G C RIC8B Missense_Mutation p.D354H 0.09 tolerated(0.16) probably_damaging(1) TCGA-66-2773-01 12 10746462 10746462 G A KLRAP1 RNA 0.06 TCGA-66-2773-01 12 10978130 10978130 T C TAS2R10 Missense_Mutation p.I247V 0.29 tolerated(0.45) benign(0.085) TCGA-66-2773-01 12 113314523 113314523 A G RPH3A Silent p.A341A 0.19 TCGA-66-2773-01 12 114841587 114841587 C T TBX5 Silent p.P39P 0.16 TCGA-66-2773-01 12 117595836 117595836 T A FBXO21 Silent p.L460L 0.31 TCGA-66-2773-01 12 117718665 117718665 G - NOS1 Frame_Shift_Del p.I464Sfs*101 0.31 TCGA-66-2773-01 12 117963025 117963025 C T KSR2 Splice_Site p.X618_splice 0.07 TCGA-66-2773-01 12 125299563 125299563 C T SCARB1 Missense_Mutation p.G128S 0.23 deleterious(0.01) possibly_damaging(0.88) TCGA-66-2773-01 12 125470744 125470744 C T DHX37 Silent p.K58K 0.04 TCGA-66-2773-01 12 133327418 133327418 C T ANKLE2 Missense_Mutation p.E220K 0.12 tolerated(0.19) possibly_damaging(0.464) TCGA-66-2773-01 12 14650913 14650913 A G ATF7IP Missense_Mutation p.Y1240C 0.29 deleterious_low_confidence(0.01) unknown(0) TCGA-66-2773-01 12 20709634 20709634 G A PDE3A Missense_Mutation p.R334K 0.04 tolerated(1) possibly_damaging(0.585) TCGA-66-2773-01 12 21487639 21487639 C T SLCO1A2 5'UTR 0.17 TCGA-66-2773-01 12 27540214 27540214 C T ARNTL2 Silent p.F206F 0.18 TCGA-66-2773-01 12 32772696 32772696 G A FGD4 Missense_Mutation p.R468Q 0.16 deleterious(0.01) benign(0.379) TCGA-66-2773-01 12 32893050 32893051 GC - DNM1L Frame_Shift_Del p.G587Efs*12 0.21 TCGA-66-2773-01 12 38714227 38714227 G C ALG10B Missense_Mutation p.E212Q 0.06 tolerated(0.12) benign(0.199) TCGA-66-2773-01 12 40629431 40629431 G A LRRK2 Silent p.L117L 0.06 TCGA-66-2773-01 12 40753184 40753184 G A LRRK2 Silent p.K2322K 0.13 TCGA-66-2773-01 12 43825197 43825197 C A ADAMTS20 Nonsense_Mutation p.E1067* 0.17 TCGA-66-2773-01 12 49298764 49298764 G A CCDC65 Silent p.L56L 0.06 TCGA-66-2773-01 12 49434859 49434859 C T KMT2D Missense_Mutation p.G2232S 0.43 probably_damaging(0.979) TCGA-66-2773-01 12 49463624 49463624 G C RHEBL1 5'UTR 0.12 TCGA-66-2773-01 12 5153935 5153935 G A KCNA5 Missense_Mutation p.E208K 0.04 deleterious(0.01) possibly_damaging(0.865) TCGA-66-2773-01 12 52845454 52845454 C G KRT6B Missense_Mutation p.E137Q 0.19 tolerated(0.13) benign(0.318) TCGA-66-2773-01 12 53460234 53460234 G A SPRYD3 Missense_Mutation p.S353F 0.04 tolerated(0.1) benign(0) TCGA-66-2773-01 12 54367216 54367216 C A HOXC11 Nonsense_Mutation p.S64* 0.17 TCGA-66-2773-01 12 54367306 54367306 C A HOXC11 Missense_Mutation p.A94E 0.20 tolerated(0.07) possibly_damaging(0.591) TCGA-66-2773-01 12 54396286 54396286 C T HOXC9 Missense_Mutation p.T204M 0.15 deleterious(0) probably_damaging(0.998) TCGA-66-2773-01 12 56489459 56489459 C G ERBB3 Missense_Mutation p.L642V 0.20 tolerated(1) benign(0.003) TCGA-66-2773-01 12 57588394 57588394 C T LRP1 Silent p.F2701F 0.13 TCGA-66-2773-01 12 58223277 58223277 G C CTDSP2 Missense_Mutation p.S56C 0.15 tolerated(0.08) possibly_damaging(0.469) TCGA-66-2773-01 12 64436626 64436626 G A SRGAP1 Silent p.L182L 0.05 TCGA-66-2773-01 12 66641781 66641781 G A IRAK3 Missense_Mutation p.E541K 0.05 tolerated_low_confidence(0.08) benign(0.007) TCGA-66-2773-01 12 68719288 68719288 G C MDM1 Missense_Mutation p.S189C 0.14 deleterious(0) probably_damaging(0.999) TCGA-66-2773-01 12 70794109 70794109 C T KCNMB4 Missense_Mutation p.H153Y 0.13 tolerated(0.53) benign(0.001) TCGA-66-2773-01 12 70931901 70931901 C T PTPRB Intron 0.21 TCGA-66-2773-01 12 71155346 71155346 C G PTPRR Missense_Mutation p.D178H 0.13 tolerated(0.15) benign(0.33) TCGA-66-2773-01 12 75804346 75804346 G A GLIPR1L2 Missense_Mutation p.G123S 0.30 deleterious(0.01) probably_damaging(1) TCGA-66-2773-01 12 78400273 78400273 C T NAV3 Missense_Mutation p.P319S 0.13 tolerated(0.75) benign(0.108) TCGA-66-2773-01 12 80647250 80647250 C T OTOGL Silent p.L421L 0.10 TCGA-66-2773-01 12 9020498 9020498 G A A2ML1 Missense_Mutation p.E1260K 0.13 tolerated(0.12) benign(0.009) TCGA-66-2773-01 12 989042 989042 C G WNK1 Missense_Mutation p.P893A 0.03 deleterious(0.02) possibly_damaging(0.777) TCGA-66-2773-01 13 109793494 109793494 C - MYO16 Frame_Shift_Del p.V1625Wfs*16 0.47 TCGA-66-2773-01 13 114193756 114193756 G A TMCO3 Missense_Mutation p.E542K 0.16 deleterious(0.05) benign(0.311) TCGA-66-2773-01 13 25008870 25008870 G A PARP4 Missense_Mutation p.S1470F 0.14 tolerated(0.09) benign(0.165) TCGA-66-2773-01 13 52034999 52034999 A G RPS4XP16 RNA 0.40 TCGA-66-2773-01 13 77636830 77636830 G A MYCBP2 Silent p.L4187L 0.06 TCGA-66-2773-01 13 80117783 80117783 G T NDFIP2 Missense_Mutation p.G269V 0.28 deleterious(0) probably_damaging(0.998) TCGA-66-2773-01 13 88329220 88329220 C G SLITRK5 Missense_Mutation p.S526C 0.08 deleterious(0.01) probably_damaging(0.962) TCGA-66-2773-01 13 96592233 96592233 G C UGGT2 Missense_Mutation p.S597C 0.09 deleterious(0) probably_damaging(0.999) TCGA-66-2773-01 13 97639159 97639159 G A OXGR1 Silent p.I285I 0.15 TCGA-66-2773-01 14 20825306 20825306 G A PARP2 Missense_Mutation p.E489K 0.26 deleterious(0) probably_damaging(1) TCGA-66-2773-01 14 22447095 22447095 C G TRAV8-6 Missense_Mutation p.L26V 0.34 deleterious(0.02) benign(0.089) TCGA-66-2773-01 14 22573951 22573951 G T TRAV24 Missense_Mutation p.W57C 0.48 deleterious(0) probably_damaging(1) TCGA-66-2773-01 14 26917321 26917321 C A NOVA1 Missense_Mutation p.Q456H 0.42 deleterious(0) possibly_damaging(0.83) TCGA-66-2773-01 14 33014486 33014486 C G AKAP6 Missense_Mutation p.I209M 0.18 deleterious(0) probably_damaging(0.997) TCGA-66-2773-01 14 35262092 35262092 C T BAZ1A Missense_Mutation p.E467K 0.22 deleterious(0) possibly_damaging(0.893) TCGA-66-2773-01 14 42356068 42356068 G T LRFN5 Silent p.L80L 0.34 TCGA-66-2773-01 14 52526897 52526897 C G NID2 Missense_Mutation p.E238Q 0.08 tolerated(0.11) possibly_damaging(0.58) TCGA-66-2773-01 14 65198834 65198834 C T PLEKHG3 Missense_Mutation p.R327W 0.08 deleterious(0) probably_damaging(0.997) TCGA-66-2773-01 14 67745820 67745820 G A MPP5 5'UTR 0.27 TCGA-66-2773-01 14 67787014 67787014 G A MPP5 Silent p.K479K 0.18 TCGA-66-2773-01 14 71227771 71227771 C T MAP3K9 Missense_Mutation p.A317T 0.32 deleterious(0) probably_damaging(0.999) TCGA-66-2773-01 14 77845400 77845400 C G SAMD15 Missense_Mutation p.P547A 0.16 deleterious(0.04) possibly_damaging(0.644) TCGA-66-2773-01 14 81610460 81610460 G C TSHR Missense_Mutation p.Q686H 0.06 tolerated(0.09) possibly_damaging(0.894) TCGA-66-2773-01 14 92624038 92624038 C T CPSF2 Missense_Mutation p.S544F 0.18 deleterious(0) probably_damaging(0.999) TCGA-66-2773-01 14 95557681 95557681 C T DICER1 Missense_Mutation p.E1796K 0.07 tolerated(0.66) probably_damaging(0.984) TCGA-66-2773-01 14 99872906 99872906 C T SETD3 Missense_Mutation p.E291K 0.19 tolerated(0.13) possibly_damaging(0.57) TCGA-66-2773-01 15 100214787 100214787 C T MEF2A Missense_Mutation p.P196S 0.14 tolerated(0.09) probably_damaging(0.986) TCGA-66-2773-01 15 22368834 22368834 G T OR4M2 Missense_Mutation p.V87L 0.17 tolerated(0.2) benign(0.05) TCGA-66-2773-01 15 22840318 22840318 G A TUBGCP5 Silent p.E128E 0.11 TCGA-66-2773-01 15 23048743 23048743 G A NIPA1 3'UTR 0.10 TCGA-66-2773-01 15 25335078 25335078 G A SNHG14 Intron 0.05 TCGA-66-2773-01 15 25440076 25440076 G A SNORD115-14 RNA 0.08 TCGA-66-2773-01 15 25453154 25453154 G A SNORD115-22 5'Flank 0.04 TCGA-66-2773-01 15 28273169 28273169 G A OCA2 Silent p.I121I 0.11 TCGA-66-2773-01 15 28460911 28460911 C G HERC2 Silent p.R2022R 0.09 TCGA-66-2773-01 15 41476221 41476221 G C EXD1 Missense_Mutation p.P485A 0.04 tolerated_low_confidence(0.28) benign(0.114) TCGA-66-2773-01 15 41822154 41822154 G A RPAP1 Nonsense_Mutation p.Q323* 0.05 TCGA-66-2773-01 15 42137191 42137191 G A PLA2G4B Missense_Mutation p.E619K 0.12 tolerated(0.16) probably_damaging(0.991) TCGA-66-2773-01 15 45047286 45047286 C G TRIM69 Missense_Mutation p.I65M 0.05 deleterious(0) probably_damaging(0.998) TCGA-66-2773-01 15 45408348 45408348 G A DUOXA2 Missense_Mutation p.V78M 0.03 deleterious(0.05) possibly_damaging(0.883) TCGA-66-2773-01 15 49284821 49284821 T A SECISBP2L Missense_Mutation p.I976F 0.20 tolerated(0.22) possibly_damaging(0.517) TCGA-66-2773-01 15 49284823 49284823 G A SECISBP2L Missense_Mutation p.S975F 0.20 deleterious(0) probably_damaging(0.999) TCGA-66-2773-01 15 51828946 51828946 C A DMXL2 Silent p.T577T 0.25 TCGA-66-2773-01 15 54306253 54306253 C G UNC13C Missense_Mutation p.Q385E 0.06 tolerated_low_confidence(0.32) benign(0.077) TCGA-66-2773-01 15 59373224 59373224 C G RNF111 Missense_Mutation p.Q680E 0.10 deleterious_low_confidence(0.01) benign(0.059) TCGA-66-2773-01 15 62173948 62173948 G A VPS13C Missense_Mutation p.S3235L 0.09 deleterious(0) possibly_damaging(0.905) TCGA-66-2773-01 15 63433984 63433984 G C LACTB Missense_Mutation p.D542H 0.08 deleterious(0) possibly_damaging(0.897) TCGA-66-2773-01 15 67571822 67571822 C T IQCH Missense_Mutation p.S120L 0.18 tolerated(0.27) benign(0.004) TCGA-66-2773-01 15 74467562 74467562 C T ISLR Silent p.L121L 0.11 TCGA-66-2773-01 15 75974642 75974642 G C CSPG4 Missense_Mutation p.Q1648E 0.08 deleterious(0) possibly_damaging(0.77) TCGA-66-2773-01 15 79063573 79063573 C T ADAMTS7 Missense_Mutation p.E817K 0.09 tolerated(0.1) benign(0.004) TCGA-66-2773-01 15 85383195 85383195 G A ALPK3 Missense_Mutation p.G431R 0.06 tolerated(0.17) benign(0.03) TCGA-66-2773-01 15 86284642 86284642 G C AKAP13 Missense_Mutation p.Q2662H 0.14 deleterious(0) probably_damaging(0.999) TCGA-66-2773-01 15 90138667 90138667 G T TICRR Missense_Mutation p.M575I 0.26 deleterious(0) probably_damaging(0.991) TCGA-66-2773-01 15 90210935 90210935 G A PLIN1 Silent p.L287L 0.10 TCGA-66-2773-01 15 90378816 90378816 T C C15orf38-AP3S2 Silent p.P372P 0.31 TCGA-66-2773-01 15 93015580 93015580 C A C15orf32 Missense_Mutation p.H68N 0.27 tolerated_low_confidence(0.41) benign(0.053) TCGA-66-2773-01 16 12897686 12897686 C G CPPED1 5'UTR 0.52 TCGA-66-2773-01 16 1398482 1398482 G C BAIAP3 Nonstop_Mutation p.*1188Sext*39 0.11 TCGA-66-2773-01 16 1470348 1470348 C T C16orf91 Missense_Mutation p.E257K 0.19 deleterious_low_confidence(0.02) benign(0.361) TCGA-66-2773-01 16 1706267 1706267 G C CRAMP1L Missense_Mutation p.L503F 0.13 tolerated_low_confidence(0.15) benign(0.014) TCGA-66-2773-01 16 20395969 20395969 T A PDILT Missense_Mutation p.K136I 0.07 deleterious(0) possibly_damaging(0.851) TCGA-66-2773-01 16 20554476 20554476 C T ACSM2B Missense_Mutation p.D464N 0.08 deleterious(0) probably_damaging(0.944) TCGA-66-2773-01 16 20788787 20788787 G C ACSM3 Missense_Mutation p.D175H 0.20 deleterious(0.01) benign(0.039) TCGA-66-2773-01 16 20975360 20975360 C T DNAH3 Missense_Mutation p.M3282I 0.25 tolerated(0.21) benign(0) TCGA-66-2773-01 16 21693107 21693107 G C OTOA Silent p.L76L 0.06 TCGA-66-2773-01 16 23226587 23226587 G T SCNN1G Nonsense_Mutation p.E583* 0.05 TCGA-66-2773-01 16 24980063 24980063 C G ARHGAP17 Missense_Mutation p.E101D 0.14 deleterious(0) probably_damaging(0.947) TCGA-66-2773-01 16 27221444 27221444 G A KDM8 Silent p.P38P 0.14 TCGA-66-2773-01 16 28915031 28915031 C T ATP2A1 Intron 0.08 TCGA-66-2773-01 16 30616764 30616764 G A ZNF689 Silent p.S108S 0.05 TCGA-66-2773-01 16 30721048 30721048 A T SRCAP Missense_Mutation p.D283V 0.11 unknown(0) TCGA-66-2773-01 16 31131554 31131554 G C KAT8 Missense_Mutation p.E87Q 0.04 tolerated(0.33) benign(0.012) TCGA-66-2773-01 16 31488639 31488639 C T TGFB1I1 Silent p.F376F 0.22 TCGA-66-2773-01 16 31724664 31724664 C G ZNF720 5'UTR 0.33 TCGA-66-2773-01 16 31927420 31927420 C G ZNF267 Nonsense_Mutation p.S617* 0.08 TCGA-66-2773-01 16 48149494 48149494 C G ABCC12 Missense_Mutation p.Q607H 0.18 deleterious(0) probably_damaging(1) TCGA-66-2773-01 16 48204038 48204038 C T ABCC11 Missense_Mutation p.R1290K 0.23 deleterious(0.01) probably_damaging(0.986) TCGA-66-2773-01 16 49669853 49669853 G C ZNF423 Silent p.L1070L 0.17 TCGA-66-2773-01 16 53671722 53671722 C G RPGRIP1L Missense_Mutation p.E1035D 0.07 tolerated(0.08) benign(0.003) TCGA-66-2773-01 16 54319207 54319207 G C IRX3 Missense_Mutation p.R196G 0.12 deleterious(0) possibly_damaging(0.903) TCGA-66-2773-01 16 55601347 55601347 G C CAPNS2 Missense_Mutation p.D227H 0.16 deleterious(0) probably_damaging(0.993) TCGA-66-2773-01 16 58010447 58010447 C T TEPP Silent p.F24F 0.10 TCGA-66-2773-01 16 67214260 67214260 G C KIAA0895L Missense_Mutation p.S85C 0.05 deleterious_low_confidence(0) possibly_damaging(0.681) TCGA-66-2773-01 16 67688560 67688560 G T RLTPR Nonsense_Mutation p.E1183* 0.09 TCGA-66-2773-01 16 70187417 70187417 A G PDPR Missense_Mutation p.I726V 0.13 deleterious(0.02) benign(0.033) TCGA-66-2773-01 16 77850897 77850897 G C VAT1L Missense_Mutation p.E105Q 0.06 deleterious(0.03) probably_damaging(0.936) TCGA-66-2773-01 16 88870964 88870964 C T CDT1 Silent p.P80P 0.27 TCGA-66-2773-01 16 88909127 88909127 A G GALNS Silent p.P77P 0.31 TCGA-66-2773-01 16 89348549 89348549 C T ANKRD11 Silent p.E1467E 0.04 TCGA-66-2773-01 16 89348736 89348736 G A ANKRD11 Missense_Mutation p.S1405F 0.03 benign(0.165) TCGA-66-2773-01 16 89655134 89655134 C T CPNE7 Silent p.L402L 0.12 TCGA-66-2773-01 17 10297613 10297613 G T MYH8 Missense_Mutation p.Q1707K 0.38 tolerated(0.15) probably_damaging(0.999) TCGA-66-2773-01 17 17900878 17900878 G A LRRC48 Missense_Mutation p.R310H 0.12 tolerated(0.66) benign(0) TCGA-66-2773-01 17 28380316 28380316 G A EFCAB5 Nonsense_Mutation p.W448* 0.13 TCGA-66-2773-01 17 2966002 2966002 C G OR1D5 Silent p.P300P 0.10 TCGA-66-2773-01 17 30320965 30320965 A G SUZ12 Missense_Mutation p.K459E 0.22 tolerated(0.09) benign(0.325) TCGA-66-2773-01 17 30348235 30348235 G C LRRC37B Missense_Mutation p.E24Q 0.06 tolerated(0.15) benign(0.39) TCGA-66-2773-01 17 31438962 31438962 C A ASIC2 Nonsense_Mutation p.E278* 0.04 TCGA-66-2773-01 17 3300801 3300801 T C OR1E1 Missense_Mutation p.S302G 0.40 tolerated(0.6) benign(0) TCGA-66-2773-01 17 34912988 34912988 G C GGNBP2 Silent p.L80L 0.17 TCGA-66-2773-01 17 3514080 3514080 C T SHPK Missense_Mutation p.R404Q 0.05 tolerated(0.12) benign(0.109) TCGA-66-2773-01 17 38612943 38612943 G T IGFBP4 3'UTR 0.47 TCGA-66-2773-01 17 39084790 39084790 C T KRT23 Missense_Mutation p.D236N 0.20 deleterious(0.02) probably_damaging(1) TCGA-66-2773-01 17 40317581 40317581 C T KCNH4 Silent p.L657L 0.16 TCGA-66-2773-01 17 40318427 40318427 G C KCNH4 Missense_Mutation p.F576L 0.11 deleterious(0) probably_damaging(0.93) TCGA-66-2773-01 17 40733896 40733896 C T FAM134C Missense_Mutation p.D446N 0.20 deleterious(0) probably_damaging(0.999) TCGA-66-2773-01 17 40963533 40963533 C T BECN1 Intron 0.16 TCGA-66-2773-01 17 42987579 42987579 G C GFAP 3'Flank 0.03 TCGA-66-2773-01 17 45914174 45914174 G A LRRC46 Silent p.T218T 0.04 TCGA-66-2773-01 17 46690586 46690586 G T HOXB8 Missense_Mutation p.A237E 0.19 deleterious_low_confidence(0) benign(0.118) TCGA-66-2773-01 17 48243412 48243412 C A SGCA Missense_Mutation p.T4K 0.14 tolerated(0.78) benign(0.011) TCGA-66-2773-01 17 48669396 48669396 C A CACNA1G Silent p.G951G 0.14 TCGA-66-2773-01 17 5087217 5087217 G C ZNF594 Nonsense_Mutation p.S112* 0.05 TCGA-66-2773-01 17 56434896 56434896 C T RNF43 Nonsense_Mutation p.W747* 0.21 TCGA-66-2773-01 17 57290419 57290419 G T SMG8 Missense_Mutation p.E745D 0.15 deleterious(0.04) possibly_damaging(0.87) TCGA-66-2773-01 17 66381253 66381253 C T ARSG Missense_Mutation p.P344L 0.10 deleterious(0) probably_damaging(0.994) TCGA-66-2773-01 17 72310317 72310317 G A DNAI2 Missense_Mutation p.E594K 0.50 tolerated_low_confidence(0.58) unknown(0) TCGA-66-2773-01 17 74732373 74732373 G C SRSF2 Missense_Mutation p.S179C 0.21 deleterious(0) unknown(0) TCGA-66-2773-01 17 74733066 74733066 G A SRSF2 Silent p.F59F 0.30 TCGA-66-2773-01 17 7577057 7577066 TCCCCTTTCT - TP53 Frame_Shift_Del p.K291Sfs*51 0.42 TCGA-66-2773-01 17 78938206 78938206 G A RPTOR 3'UTR 0.24 TCGA-66-2773-01 18 14105884 14105884 C T ZNF519 Missense_Mutation p.D219N 0.05 tolerated(1) benign(0) TCGA-66-2773-01 18 2909706 2909706 C T EMILIN2 Silent p.L905L 0.08 TCGA-66-2773-01 18 2945840 2945840 C T LPIN2 Intron 0.10 TCGA-66-2773-01 18 30093087 30093087 A T WBP11P1 RNA 0.16 TCGA-66-2773-01 18 31318747 31318747 C G ASXL3 Missense_Mutation p.T460S 0.12 possibly_damaging(0.459) TCGA-66-2773-01 18 42532367 42532367 G T SETBP1 Missense_Mutation p.R1021M 0.24 deleterious(0) probably_damaging(0.998) TCGA-66-2773-01 18 51886933 51886933 T C C18orf54 5'UTR 0.12 TCGA-66-2773-01 18 56998750 56998750 A G LMAN1 Missense_Mutation p.C466R 0.19 deleterious(0) probably_damaging(0.999) TCGA-66-2773-01 18 64172297 64172297 C T CDH19 Missense_Mutation p.D691N 0.13 tolerated(0.3) probably_damaging(0.973) TCGA-66-2773-01 18 67344978 67344978 G T DOK6 Missense_Mutation p.A100S 0.13 deleterious(0.02) possibly_damaging(0.759) TCGA-66-2773-01 18 74587461 74587461 C G ZNF236 Missense_Mutation p.F225L 0.19 deleterious(0.02) benign(0.019) TCGA-66-2773-01 19 10600447 10600447 G A KEAP1 Missense_Mutation p.R470C 0.23 deleterious(0.01) benign(0.136) TCGA-66-2773-01 19 10602619 10602619 C T KEAP1 Missense_Mutation p.R320Q 0.19 deleterious(0) possibly_damaging(0.834) TCGA-66-2773-01 19 13988490 13988490 C T NANOS3 Missense_Mutation p.T143I 0.23 tolerated(0.08) possibly_damaging(0.673) TCGA-66-2773-01 19 15579564 15579564 C T PGLYRP2 Splice_Site p.X548_splice 0.12 TCGA-66-2773-01 19 15760021 15760021 G T CYP4F3 Nonsense_Mutation p.E193* 0.31 TCGA-66-2773-01 19 16973243 16973243 G C SIN3B Missense_Mutation p.R380T 0.11 deleterious(0.02) possibly_damaging(0.889) TCGA-66-2773-01 19 17732678 17732678 C T UNC13A Missense_Mutation p.G1402E 0.11 tolerated(0.73) benign(0.096) TCGA-66-2773-01 19 18377278 18377278 T C KIAA1683 Missense_Mutation p.T358A 0.15 tolerated(0.39) benign(0.027) TCGA-66-2773-01 19 19313122 19313122 G A NR2C2AP Intron 0.05 TCGA-66-2773-01 19 2097681 2097681 C T IZUMO4 Intron 0.17 TCGA-66-2773-01 19 21606071 21606071 C T ZNF493 Missense_Mutation p.H204Y 0.07 tolerated(0.13) probably_damaging(0.966) TCGA-66-2773-01 19 21720462 21720462 C T ZNF429 Missense_Mutation p.P536L 0.06 tolerated(0.06) possibly_damaging(0.591) TCGA-66-2773-01 19 21992534 21992534 C T ZNF43 Missense_Mutation p.R102K 0.14 tolerated(0.1) benign(0.023) TCGA-66-2773-01 19 22155700 22155700 C T ZNF208 Silent p.K712K 0.14 TCGA-66-2773-01 19 22363232 22363232 G T ZNF676 Silent p.A429A 0.24 TCGA-66-2773-01 19 22363386 22363386 G A ZNF676 Missense_Mutation p.S378L 0.05 deleterious(0.02) probably_damaging(0.966) TCGA-66-2773-01 19 22574587 22574587 G A ZNF98 Missense_Mutation p.H484Y 0.10 deleterious(0.02) probably_damaging(0.943) TCGA-66-2773-01 19 23159571 23159571 G A ZNF728 Nonsense_Mutation p.Q190* 0.16 TCGA-66-2773-01 19 23299913 23299913 C A ZNF730 5'UTR 0.39 TCGA-66-2773-01 19 31039095 31039095 C T ZNF536 Nonsense_Mutation p.Q857* 0.08 TCGA-66-2773-01 19 35837110 35837110 C G CD22 Missense_Mutation p.T795S 0.03 deleterious(0.01) probably_damaging(0.945) TCGA-66-2773-01 19 36135685 36135685 C T ETV2 Silent p.F320F 0.15 TCGA-66-2773-01 19 36501816 36501816 G C ALKBH6 Missense_Mutation p.L134V 0.05 tolerated(0.16) possibly_damaging(0.547) TCGA-66-2773-01 19 37880588 37880588 G T ZNF527 Missense_Mutation p.R546I 0.06 deleterious(0) probably_damaging(0.999) TCGA-66-2773-01 19 39116687 39116687 G A EIF3K Missense_Mutation p.R100Q 0.13 tolerated(0.63) benign(0.003) TCGA-66-2773-01 19 43268417 43268417 G T PSG8 Missense_Mutation p.F27L 0.09 tolerated(0.06) benign(0.141) TCGA-66-2773-01 19 4361705 4361705 G C SH3GL1 Missense_Mutation p.I333M 0.14 deleterious(0) probably_damaging(0.988) TCGA-66-2773-01 19 44128312 44128312 G A CADM4 Silent p.I337I 0.17 TCGA-66-2773-01 19 44739709 44739709 G A ZNF227 Missense_Mutation p.E376K 0.15 tolerated(0.47) probably_damaging(0.976) TCGA-66-2773-01 19 49489218 49489218 G A GYS1 Silent p.C189C 0.16 TCGA-66-2773-01 19 49621835 49621835 G A C19orf73 3'UTR 0.07 TCGA-66-2773-01 19 52033942 52033942 A G SIGLEC6 Silent p.N233N 0.25 TCGA-66-2773-01 19 52568849 52568849 C T ZNF841 Silent p.E762E 0.20 TCGA-66-2773-01 19 52876394 52876394 G C ZNF880 Missense_Mutation p.E15Q 0.11 deleterious(0) probably_damaging(0.997) TCGA-66-2773-01 19 53454331 53454331 C G ZNF816 Missense_Mutation p.E233Q 0.11 tolerated(0.05) benign(0.191) TCGA-66-2773-01 19 53668754 53668754 C A ZNF665 Missense_Mutation p.R330L 0.03 tolerated(0.23) benign(0.201) TCGA-66-2773-01 19 53669024 53669024 C T ZNF665 Missense_Mutation p.G240E 0.17 deleterious(0.01) probably_damaging(0.976) TCGA-66-2773-01 19 54665951 54665951 C T TMC4 Missense_Mutation p.E531K 0.21 deleterious(0.03) probably_damaging(0.997) TCGA-66-2773-01 19 54973144 54973144 G C LENG8 3'UTR 0.07 TCGA-66-2773-01 19 55085814 55085814 C T LILRA2 Silent p.I39I 0.11 TCGA-66-2773-01 19 55365418 55365418 G T KIR3DL2 Missense_Mutation p.G191V 0.76 deleterious(0.01) probably_damaging(1) TCGA-66-2773-01 19 56702224 56702224 G A ZSCAN5B Nonsense_Mutation p.Q241* 0.04 TCGA-66-2773-01 19 56935138 56935138 C T ZNF583 Nonsense_Mutation p.Q371* 0.05 TCGA-66-2773-01 19 57765443 57765443 G C ZNF805 Missense_Mutation p.R419P 0.11 deleterious(0) probably_damaging(1) TCGA-66-2773-01 19 58190285 58190285 G C ZSCAN4 3'UTR 0.06 TCGA-66-2773-01 19 758596 758596 G A MISP Silent p.E550E 0.04 TCGA-66-2773-01 19 9070578 9070578 G C MUC16 Missense_Mutation p.P5623R 0.41 unknown(0) TCGA-66-2773-01 19 9452522 9452522 C G ZNF559 Missense_Mutation p.S132C 0.15 tolerated(0.12) benign(0.129) TCGA-66-2773-01 19 9965213 9965213 G A OLFM2 Silent p.T338T 0.19 TCGA-66-2773-01 1 10425617 10425617 G A KIF1B Missense_Mutation p.E1509K 0.07 tolerated(0.14) probably_damaging(0.979) TCGA-66-2773-01 1 10431296 10431296 C G KIF1B Missense_Mutation p.S1595C 0.06 deleterious(0) possibly_damaging(0.891) TCGA-66-2773-01 1 108115949 108115949 G C VAV3 3'UTR 0.05 TCGA-66-2773-01 1 110592124 110592124 C A STRIP1 Missense_Mutation p.P611T 0.12 deleterious(0) probably_damaging(0.999) TCGA-66-2773-01 1 12017937 12017937 C T PLOD1 Silent p.F260F 0.21 TCGA-66-2773-01 1 120336814 120336814 G C REG4 3'UTR 0.04 TCGA-66-2773-01 1 149931639 149931639 C T OTUD7B Missense_Mutation p.R270Q 0.15 deleterious(0) possibly_damaging(0.857) TCGA-66-2773-01 1 150727507 150727507 C G CTSS Missense_Mutation p.E123D 0.13 tolerated(0.46) benign(0.006) TCGA-66-2773-01 1 152279632 152279632 G C FLG Nonsense_Mutation p.S2577* 0.10 TCGA-66-2773-01 1 152280742 152280742 C G FLG Missense_Mutation p.G2207A 0.19 probably_damaging(0.939) TCGA-66-2773-01 1 154933468 154933468 C G PYGO2 Missense_Mutation p.R46S 0.05 deleterious(0.01) probably_damaging(0.979) TCGA-66-2773-01 1 155240700 155240700 C G CLK2 Silent p.R23R 0.03 TCGA-66-2773-01 1 156883063 156883063 C T PEAR1 Missense_Mutation p.P834S 0.10 tolerated(0.19) possibly_damaging(0.742) TCGA-66-2773-01 1 157504602 157504602 C G FCRL5 Missense_Mutation p.E495Q 0.31 tolerated(0.13) possibly_damaging(0.596) TCGA-66-2773-01 1 158606445 158606445 C T SPTA1 Missense_Mutation p.E1766K 0.04 tolerated(0.1) probably_damaging(0.999) TCGA-66-2773-01 1 158913720 158913720 G C PYHIN1 Missense_Mutation p.K381N 0.13 tolerated(0.05) benign(0.292) TCGA-66-2773-01 1 161166625 161166625 C G ADAMTS4 Missense_Mutation p.D227H 0.28 deleterious(0) probably_damaging(0.996) TCGA-66-2773-01 1 1635743 1635743 C T CDK11A Silent p.V535V 0.15 TCGA-66-2773-01 1 16524958 16524958 C T ARHGEF19 3'UTR 0.43 TCGA-66-2773-01 1 165397991 165397991 G C RXRG Missense_Mutation p.P88A 0.31 deleterious(0.02) probably_damaging(0.989) TCGA-66-2773-01 1 168510205 168510205 C T XCL2 Silent p.V110V 0.12 TCGA-66-2773-01 1 17359560 17359560 C G SDHB Missense_Mutation p.R94T 0.09 deleterious(0) probably_damaging(0.991) TCGA-66-2773-01 1 181479628 181479628 G A CACNA1E Missense_Mutation p.M94I 0.15 deleterious(0.01) benign(0.019) TCGA-66-2773-01 1 183866988 183866988 A G RGL1 Missense_Mutation p.N431S 0.25 tolerated(0.07) possibly_damaging(0.659) TCGA-66-2773-01 1 185934984 185934984 G A HMCN1 Missense_Mutation p.D717N 0.13 probably_damaging(0.967) TCGA-66-2773-01 1 190423988 190423988 C A BRINP3 Missense_Mutation p.L11F 0.22 tolerated_low_confidence(0.7) benign(0.002) TCGA-66-2773-01 1 196398851 196398851 C A KCNT2 Missense_Mutation p.K225N 0.15 tolerated(0.53) benign(0.002) TCGA-66-2773-01 1 200617581 200617581 C T DDX59 Missense_Mutation p.E528K 0.04 deleterious(0) probably_damaging(0.994) TCGA-66-2773-01 1 201334331 201334331 G C TNNT2 Silent p.L123L 0.04 TCGA-66-2773-01 1 203709050 203709050 G A ATP2B4 3'UTR 0.10 TCGA-66-2773-01 1 205896719 205896719 G A SLC26A9 Silent p.L372L 0.21 TCGA-66-2773-01 1 206784717 206784717 G A EIF2D Nonsense_Mutation p.R23* 0.13 TCGA-66-2773-01 1 212792639 212792639 G A ATF3 Intron 0.35 TCGA-66-2773-01 1 214705590 214705590 C G PTPN14 Intron 0.14 TCGA-66-2773-01 1 2160703 2160703 C A SKI Silent p.I166I 0.25 TCGA-66-2773-01 1 218520311 218520311 G A TGFB2 Missense_Mutation p.E90K 0.11 tolerated(0.52) benign(0.167) TCGA-66-2773-01 1 221053402 221053402 C T HLX Missense_Mutation p.S68L 0.33 deleterious_low_confidence(0) possibly_damaging(0.644) TCGA-66-2773-01 1 223958166 223958166 C A CAPN2 Silent p.I614I 0.34 TCGA-66-2773-01 1 224514112 224514112 C G NVL Missense_Mutation p.D38H 0.11 deleterious(0.01) possibly_damaging(0.77) TCGA-66-2773-01 1 228345525 228345525 C T GJC2 Silent p.F22F 0.26 TCGA-66-2773-01 1 229568731 229568731 G C ACTA1 Intron 0.34 TCGA-66-2773-01 1 237758861 237758861 C G RYR2 Silent p.R1500R 0.24 TCGA-66-2773-01 1 237944913 237944913 G C RYR2 Missense_Mutation p.D3977H 0.25 probably_damaging(0.993) TCGA-66-2773-01 1 240286514 240286514 G A FMN2 Missense_Mutation p.E551K 0.18 unknown(0) TCGA-66-2773-01 1 240371515 240371515 C G FMN2 Missense_Mutation p.L1135V 0.06 unknown(0) TCGA-66-2773-01 1 243663221 243663221 C T SDCCAG8 3'UTR 0.11 TCGA-66-2773-01 1 247695440 247695440 G T OR2C3 Missense_Mutation p.A125D 0.17 deleterious(0) possibly_damaging(0.58) TCGA-66-2773-01 1 248028218 248028218 C T TRIM58 Missense_Mutation p.P243L 0.31 deleterious(0) benign(0.223) TCGA-66-2773-01 1 248202246 248202246 G T OR2L2 Missense_Mutation p.R226L 0.24 deleterious(0.04) benign(0.055) TCGA-66-2773-01 1 248224439 248224439 G T OR2L3 Silent p.S152S 0.37 TCGA-66-2773-01 1 248617004 248617004 G A OR2T2 Silent p.L302L 0.11 TCGA-66-2773-01 1 248637513 248637513 C T OR2T3 Missense_Mutation p.P288S 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-66-2773-01 1 248801657 248801657 C T OR2T35 Silent p.L301L 0.18 TCGA-66-2773-01 1 249149643 249149643 C T ZNF692 Missense_Mutation p.R330K 0.11 tolerated(0.19) benign(0.038) TCGA-66-2773-01 1 27099475 27099475 A - ARID1A Frame_Shift_Del p.A1239Lfs*30 0.20 TCGA-66-2773-01 1 31405944 31405944 G C PUM1 3'UTR 0.24 TCGA-66-2773-01 1 40092476 40092476 C A HEYL Silent p.L230L 0.62 TCGA-66-2773-01 1 4772184 4772184 G A AJAP1 Missense_Mutation p.R85Q 0.33 tolerated(0.23) benign(0.202) TCGA-66-2773-01 1 64034100 64034100 C T EFCAB7 Silent p.N539N 0.04 TCGA-66-2773-01 1 67185068 67185068 C T SGIP1 Silent p.F574F 0.20 TCGA-66-2773-01 1 77333212 77333212 C T ST6GALNAC5 5'UTR 0.24 TCGA-66-2773-01 1 78401632 78401632 C G NEXN Missense_Mutation p.S459C 0.21 deleterious(0) probably_damaging(0.927) TCGA-66-2773-01 1 84372075 84372075 G A TTLL7 Silent p.L688L 0.07 TCGA-66-2773-01 20 11899807 11899807 C T BTBD3 Missense_Mutation p.R134W 0.12 deleterious(0) benign(0.157) TCGA-66-2773-01 20 20033046 20033046 G A CRNKL1 Nonsense_Mutation p.Q142* 0.07 TCGA-66-2773-01 20 21314742 21314742 C T XRN2 Silent p.V384V 0.09 TCGA-66-2773-01 20 21492991 21492991 C A NKX2-2 Missense_Mutation p.R131L 0.31 deleterious(0) probably_damaging(0.992) TCGA-66-2773-01 20 31967306 31967306 G T CDK5RAP1 Silent p.I356I 0.13 TCGA-66-2773-01 20 35350132 35350132 C T NDRG3 Missense_Mutation p.E3K 0.06 tolerated(0.14) benign(0.297) TCGA-66-2773-01 20 37153584 37153584 G C RALGAPB Missense_Mutation p.D595H 0.07 deleterious(0.04) probably_damaging(1) TCGA-66-2773-01 20 37154046 37154046 G A RALGAPB Splice_Site p.X596_splice 0.06 TCGA-66-2773-01 20 39704838 39704838 C G TOP1 Missense_Mutation p.H61Q 0.10 tolerated_low_confidence(0.16) unknown(0) TCGA-66-2773-01 20 43057096 43057096 G A HNF4A Missense_Mutation p.M417I 0.12 tolerated_low_confidence(1) benign(0.004) TCGA-66-2773-01 20 46266425 46266425 C T NCOA3 Missense_Mutation p.L804F 0.03 deleterious(0) probably_damaging(0.999) TCGA-66-2773-01 20 47874027 47874027 A C ZNFX1 Missense_Mutation p.L864R 0.18 deleterious(0) possibly_damaging(0.819) TCGA-66-2773-01 20 55026901 55026901 G A CASS4 Silent p.V223V 0.17 TCGA-66-2773-01 20 61512009 61512009 G A DIDO1 Missense_Mutation p.H1767Y 0.06 probably_damaging(0.972) TCGA-66-2773-01 20 61512017 61512017 G T DIDO1 Nonsense_Mutation p.S1764* 0.06 TCGA-66-2773-01 20 61512069 61512069 G C DIDO1 Missense_Mutation p.Q1747E 0.04 benign(0.2) TCGA-66-2773-01 20 61512895 61512895 G A DIDO1 Silent p.S1471S 0.04 TCGA-66-2773-01 20 61512896 61512896 G A DIDO1 Missense_Mutation p.S1471F 0.04 probably_damaging(0.999) TCGA-66-2773-01 21 10862965 10862965 C T IGHV1OR21-1 Silent p.V87V 0.03 TCGA-66-2773-01 21 16338048 16338048 C T NRIP1 Silent p.L822L 0.31 TCGA-66-2773-01 21 31744142 31744142 C A KRTAP13-2 Silent p.L130L 0.17 TCGA-66-2773-01 21 43983979 43983979 G T SLC37A1 Missense_Mutation p.G376V 0.18 deleterious(0) probably_damaging(1) TCGA-66-2773-01 21 44293671 44293671 G C WDR4 Missense_Mutation p.L96V 0.12 tolerated(0.25) benign(0.348) TCGA-66-2773-01 21 46101633 46101633 C A KRTAP12-1 3'UTR 0.31 TCGA-66-2773-01 21 46321448 46321448 C G ITGB2 Missense_Mutation p.E234Q 0.08 deleterious(0) probably_damaging(0.939) TCGA-66-2773-01 22 19483524 19483524 A G CDC45 Missense_Mutation p.Y220C 0.23 deleterious(0) probably_damaging(1) TCGA-66-2773-01 22 21990876 21990876 C T CCDC116 Silent p.F453F 0.10 TCGA-66-2773-01 22 24483605 24483605 C G CABIN1 Nonsense_Mutation p.S1155* 0.15 TCGA-66-2773-01 22 26219576 26219576 C T MYO18B Nonsense_Mutation p.R876* 0.03 TCGA-66-2773-01 22 29957616 29957616 C A NIPSNAP1 Missense_Mutation p.R153M 0.29 deleterious(0.01) benign(0.375) TCGA-66-2773-01 22 30823381 30823381 C A MTFP1 Missense_Mutation p.P140H 0.28 deleterious(0) probably_damaging(1) TCGA-66-2773-01 22 31302239 31302239 G A OSBP2 Silent p.L888L 0.10 TCGA-66-2773-01 22 36688126 36688126 C T MYH9 Missense_Mutation p.R1417Q 0.05 probably_damaging(0.961) TCGA-66-2773-01 22 36710282 36710282 C G MYH9 Missense_Mutation p.E488Q 0.04 benign(0.419) TCGA-66-2773-01 22 38111832 38111832 G A TRIOBP Missense_Mutation p.M173I 0.18 deleterious_low_confidence(0.04) benign(0.38) TCGA-66-2773-01 22 38823646 38823646 G T KCNJ4 Missense_Mutation p.D164E 0.34 deleterious(0.01) probably_damaging(0.993) TCGA-66-2773-01 22 39112737 39112737 G A GTPBP1 Missense_Mutation p.R189Q 0.15 deleterious(0) probably_damaging(0.985) TCGA-66-2773-01 22 39530740 39530740 G T CBX7 Missense_Mutation p.D88E 0.50 deleterious(0) probably_damaging(0.918) TCGA-66-2773-01 22 40802122 40802122 C T SGSM3 Silent p.F285F 0.05 TCGA-66-2773-01 22 41265114 41265114 G C XPNPEP3 Missense_Mutation p.R59T 0.03 tolerated(0.05) benign(0.01) TCGA-66-2773-01 22 41265120 41265120 G T XPNPEP3 Splice_Site p.X61_splice 0.03 TCGA-66-2773-01 22 41322407 41322407 G C XPNPEP3 Missense_Mutation p.D498H 0.04 tolerated(0.37) benign(0.002) TCGA-66-2773-01 22 41322413 41322413 G A XPNPEP3 Missense_Mutation p.E500K 0.04 deleterious(0) probably_damaging(0.931) TCGA-66-2773-01 22 41574082 41574082 G T EP300 Missense_Mutation p.G2123W 0.23 possibly_damaging(0.844) TCGA-66-2773-01 22 45312239 45312239 G A PHF21B Missense_Mutation p.A162V 0.28 deleterious(0.02) benign(0.169) TCGA-66-2773-01 22 50718176 50718176 G A PLXNB2 Silent p.L1424L 0.07 TCGA-66-2773-01 2 113088861 113088861 G C ZC3H6 Missense_Mutation p.R789T 0.12 deleterious(0) probably_damaging(0.996) TCGA-66-2773-01 2 113089966 113089966 G A ZC3H6 Silent p.G1157G 0.15 TCGA-66-2773-01 2 113818440 113818440 C T IL36RN Missense_Mutation p.S14L 0.07 tolerated(0.08) benign(0.046) TCGA-66-2773-01 2 119699912 119699912 C G MARCO Silent p.L12L 0.12 TCGA-66-2773-01 2 133403613 133403613 C A LYPD1 3'UTR 0.13 TCGA-66-2773-01 2 135102562 135102562 G C MGAT5 Missense_Mutation p.E347Q 0.04 deleterious(0) possibly_damaging(0.723) TCGA-66-2773-01 2 136566561 136566561 A - LCT Frame_Shift_Del p.V1119Afs*4 0.31 TCGA-66-2773-01 2 136700965 136700965 C G DARS Missense_Mutation p.E136Q 0.05 deleterious(0) probably_damaging(0.986) TCGA-66-2773-01 2 141272315 141272315 C A LRP1B Missense_Mutation p.A2726S 0.17 possibly_damaging(0.694) TCGA-66-2773-01 2 141272329 141272329 G T LRP1B Missense_Mutation p.S2721Y 0.10 possibly_damaging(0.86) TCGA-66-2773-01 2 141474323 141474323 G A LRP1B Nonsense_Mutation p.Q1941* 0.06 TCGA-66-2773-01 2 1437379 1437379 G A TPO Missense_Mutation p.D117N 0.25 deleterious(0.02) benign(0.103) TCGA-66-2773-01 2 148705764 148705764 C T ORC4 Silent p.V206V 0.07 TCGA-66-2773-01 2 149247447 149247447 G C MBD5 Missense_Mutation p.E1183Q 0.05 deleterious_low_confidence(0.03) unknown(0) TCGA-66-2773-01 2 15676580 15676580 G A NBAS Silent p.V203V 0.15 TCGA-66-2773-01 2 158115055 158115055 C G GALNT5 Missense_Mutation p.S154C 0.10 deleterious_low_confidence(0.04) possibly_damaging(0.838) TCGA-66-2773-01 2 160806154 160806154 G C PLA2R1 Nonsense_Mutation p.S1225* 0.15 TCGA-66-2773-01 2 163130385 163130385 C T IFIH1 Missense_Mutation p.A792T 0.18 deleterious(0) probably_damaging(0.997) TCGA-66-2773-01 2 164468167 164468167 T C FIGN Missense_Mutation p.I59V 0.29 deleterious(0) possibly_damaging(0.785) TCGA-66-2773-01 2 1653434 1653434 G A PXDN Silent p.N706N 0.18 TCGA-66-2773-01 2 165994424 165994424 C T SCN3A Missense_Mutation p.E786K 0.15 tolerated(0.4) benign(0.032) TCGA-66-2773-01 2 166786171 166786171 C A TTC21B Nonsense_Mutation p.G392* 0.25 TCGA-66-2773-01 2 168100159 168100159 G A XIRP2 Missense_Mutation p.E753K 0.06 probably_damaging(0.999) TCGA-66-2773-01 2 170012911 170012911 G A LRP2 Silent p.I4008I 0.06 TCGA-66-2773-01 2 170097688 170097688 G A LRP2 Silent p.H1285H 0.30 TCGA-66-2773-01 2 177017467 177017467 C T HOXD4 Missense_Mutation p.H189Y 0.08 deleterious(0) probably_damaging(0.977) TCGA-66-2773-01 2 179453829 179453829 C T TTN Missense_Mutation p.D20875N 0.21 TCGA-66-2773-01 2 179458966 179458966 G C TTN Missense_Mutation p.P19385R 0.21 TCGA-66-2773-01 2 179544672 179544672 C A TTN Nonsense_Mutation p.E11177* 0.17 TCGA-66-2773-01 2 179598557 179598557 G T TTN Missense_Mutation p.L5187M 0.21 TCGA-66-2773-01 2 180309645 180309645 G A ZNF385B Silent p.Y385Y 0.03 TCGA-66-2773-01 2 183099170 183099170 C A PDE1A Missense_Mutation p.V152L 0.18 tolerated(0.3) benign(0.008) TCGA-66-2773-01 2 185731138 185731138 G A ZNF804A Missense_Mutation p.D52N 0.15 deleterious(0) probably_damaging(0.968) TCGA-66-2773-01 2 189599558 189599558 C A DIRC1 Missense_Mutation p.L30F 0.07 tolerated_low_confidence(0.15) possibly_damaging(0.765) TCGA-66-2773-01 2 196578165 196578165 G A SLC39A10 Silent p.Q528Q 0.08 TCGA-66-2773-01 2 196709816 196709816 C T DNAH7 Missense_Mutation p.G2952D 0.27 tolerated(0.48) benign(0) TCGA-66-2773-01 2 197674075 197674075 G A C2orf66 Nonsense_Mutation p.Q13* 0.15 TCGA-66-2773-01 2 203591054 203591054 C T FAM117B Missense_Mutation p.H310Y 0.05 deleterious(0.02) possibly_damaging(0.889) TCGA-66-2773-01 2 210560660 210560660 C G MAP2 Missense_Mutation p.Q1256E 0.13 deleterious_low_confidence(0.04) probably_damaging(0.926) TCGA-66-2773-01 2 210574737 210574737 C T MAP2 Missense_Mutation p.S1611L 0.09 deleterious(0) probably_damaging(0.982) TCGA-66-2773-01 2 211168320 211168320 G C MYL1 Intron 0.27 TCGA-66-2773-01 2 211421450 211421450 T C CPS1 Missense_Mutation p.I4T 0.20 deleterious_low_confidence(0) benign(0.001) TCGA-66-2773-01 2 215813451 215813451 G C ABCA12 Missense_Mutation p.H2325D 0.20 tolerated(1) benign(0.001) TCGA-66-2773-01 2 216191601 216191601 G T ATIC Missense_Mutation p.Q196H 0.27 deleterious(0.02) benign(0.024) TCGA-66-2773-01 2 219563856 219563856 A G STK36 Missense_Mutation p.M1197V 0.28 tolerated(0.32) benign(0.003) TCGA-66-2773-01 2 219614860 219614860 C G TTLL4 Missense_Mutation p.S955C 0.10 deleterious(0.01) benign(0.064) TCGA-66-2773-01 2 220098130 220098130 G T ANKZF1 Missense_Mutation p.R265L 0.29 deleterious(0) probably_damaging(0.98) TCGA-66-2773-01 2 220348933 220348933 C T SPEG Nonsense_Mutation p.Q2250* 0.10 TCGA-66-2773-01 2 220400040 220400040 A G ASIC4 Missense_Mutation p.Y516C 0.14 deleterious(0) probably_damaging(1) TCGA-66-2773-01 2 220466708 220466708 A T STK11IP Splice_Site p.X126_splice 0.12 TCGA-66-2773-01 2 220478611 220478611 G A STK11IP Missense_Mutation p.R903Q 0.07 deleterious(0) benign(0.329) TCGA-66-2773-01 2 224866483 224866483 C T SERPINE2 Silent p.S57S 0.13 TCGA-66-2773-01 2 225635262 225635262 C T DOCK10 Missense_Mutation p.R2102K 0.30 deleterious(0.04) probably_damaging(0.997) TCGA-66-2773-01 2 228881719 228881719 C A SPHKAP Missense_Mutation p.G1284V 0.14 deleterious(0) probably_damaging(0.972) TCGA-66-2773-01 2 231236354 231236354 A G SP140L Missense_Mutation p.K209E 0.13 tolerated(0.08) benign(0.399) TCGA-66-2773-01 2 237405854 237405854 C A IQCA1 Silent p.T96T 0.26 TCGA-66-2773-01 2 242402832 242402832 A G FARP2 Missense_Mutation p.Y587C 0.06 deleterious(0) probably_damaging(1) TCGA-66-2773-01 2 24494810 24494810 C T ITSN2 Silent p.R694R 0.10 TCGA-66-2773-01 2 32145919 32145919 G A MEMO1 Silent p.S91S 0.08 TCGA-66-2773-01 2 47382404 47382404 C G C2orf61 5'UTR 0.10 TCGA-66-2773-01 2 51254939 51254939 A T NRXN1 Missense_Mutation p.L158Q 0.10 deleterious(0) benign(0.162) TCGA-66-2773-01 2 53897777 53897777 G A ASB3 Silent p.L509L 0.14 TCGA-66-2773-01 2 60689209 60689209 C G BCL11A Missense_Mutation p.E280Q 0.12 deleterious(0.01) benign(0.403) TCGA-66-2773-01 2 61512052 61512052 C T USP34 Missense_Mutation p.R1597Q 0.09 tolerated(0.1) benign(0.033) TCGA-66-2773-01 2 65316076 65316076 C T RAB1A Silent p.A139A 0.12 TCGA-66-2773-01 2 69642328 69642328 G A NFU1 Missense_Mutation p.S158L 0.17 tolerated(0.11) benign(0.017) TCGA-66-2773-01 2 7003644 7003644 G A CMPK2 Silent p.I247I 0.08 TCGA-66-2773-01 2 71651066 71651066 G A ZNF638 Silent p.L1474L 0.09 TCGA-66-2773-01 2 73675343 73675343 G A ALMS1 Silent p.Q562Q 0.13 TCGA-66-2773-01 2 79255447 79255447 A G REG3G 3'UTR 0.32 TCGA-66-2773-01 2 85820097 85820097 G A VAMP5 Silent p.Q56Q 0.12 TCGA-66-2773-01 2 89247041 89247041 G A IGKV1-5 Silent p.I43I 0.04 TCGA-66-2773-01 3 111325705 111325705 A G CD96 Intron 0.43 TCGA-66-2773-01 3 115395195 115395195 G A GAP43 Silent p.Q158Q 0.46 TCGA-66-2773-01 3 118865717 118865717 C A C3orf30 Missense_Mutation p.D227E 0.10 tolerated(0.05) probably_damaging(0.971) TCGA-66-2773-01 3 119121087 119121087 C T ARHGAP31 Silent p.L496L 0.09 TCGA-66-2773-01 3 119301094 119301094 C T ADPRH Silent p.F26F 0.06 TCGA-66-2773-01 3 121206895 121206895 G A POLQ Missense_Mutation p.S1628L 0.06 deleterious(0.05) possibly_damaging(0.548) TCGA-66-2773-01 3 121305451 121305451 G C ARGFX 3'UTR 0.07 TCGA-66-2773-01 3 121413392 121413392 T C GOLGB1 Missense_Mutation p.K1993R 0.43 probably_damaging(0.919) TCGA-66-2773-01 3 123452594 123452594 C T MYLK Missense_Mutation p.E417K 0.11 tolerated(0.18) probably_damaging(0.963) TCGA-66-2773-01 3 127335943 127335943 C T MCM2 Silent p.L585L 0.13 TCGA-66-2773-01 3 127788538 127788538 C G SEC61A1 3'UTR 0.09 TCGA-66-2773-01 3 132277834 132277834 C G ACAD11 Missense_Mutation p.R775T 0.07 tolerated(0.11) benign(0.009) TCGA-66-2773-01 3 133666117 133666117 G T SLCO2A1 Silent p.A426A 0.38 TCGA-66-2773-01 3 138375001 138375001 C G PIK3CB Missense_Mutation p.D1020H 0.06 deleterious(0) possibly_damaging(0.566) TCGA-66-2773-01 3 142103448 142103448 G C XRN1 Missense_Mutation p.Q807E 0.07 tolerated(0.07) benign(0.002) TCGA-66-2773-01 3 142389917 142389917 G C PLS1 Missense_Mutation p.G106A 0.04 deleterious(0.04) benign(0.136) TCGA-66-2773-01 3 1424979 1424979 C T CNTN6 Missense_Mutation p.P802S 0.17 deleterious(0.01) probably_damaging(0.98) TCGA-66-2773-01 3 145789130 145789130 C G PLOD2 Missense_Mutation p.W643C 0.22 deleterious(0) probably_damaging(0.997) TCGA-66-2773-01 3 155215124 155215124 C T PLCH1 Missense_Mutation p.D615N 0.39 deleterious(0) probably_damaging(0.992) TCGA-66-2773-01 3 157081156 157081156 C T VEPH1 Missense_Mutation p.E578K 0.03 deleterious(0.01) probably_damaging(0.999) TCGA-66-2773-01 3 157081393 157081393 C T VEPH1 Missense_Mutation p.E499K 0.03 tolerated(0.28) benign(0.06) TCGA-66-2773-01 3 157841720 157841720 C T RSRC1 Missense_Mutation p.S87L 0.06 deleterious_low_confidence(0) unknown(0) TCGA-66-2773-01 3 160232848 160232848 C G KPNA4 Intron 0.09 TCGA-66-2773-01 3 165547523 165547523 G A BCHE Silent p.F433F 0.11 TCGA-66-2773-01 3 167016129 167016129 C G ZBBX Missense_Mutation p.E615Q 0.10 tolerated(0.11) benign(0.316) TCGA-66-2773-01 3 168849256 168849256 C T MECOM Missense_Mutation p.E68K 0.13 tolerated(0.07) possibly_damaging(0.767) TCGA-66-2773-01 3 173322732 173322732 C A NLGN1 Missense_Mutation p.P115H 0.10 deleterious(0.03) probably_damaging(0.998) TCGA-66-2773-01 3 178928079 178928079 G A PIK3CA Missense_Mutation p.E453K 0.10 tolerated(0.06) possibly_damaging(0.801) TCGA-66-2773-01 3 180671612 180671612 T A FXR1 Silent p.V288V 0.10 TCGA-66-2773-01 3 183960603 183960603 G C ALG3 Silent p.L384L 0.08 TCGA-66-2773-01 3 184295449 184295449 G A EPHB3 Missense_Mutation p.E495K 0.14 tolerated(0.21) benign(0.06) TCGA-66-2773-01 3 192125893 192125893 C A FGF12 Silent p.L40L 0.31 TCGA-66-2773-01 3 193232645 193232645 G A ATP13A4 Missense_Mutation p.R26W 0.08 deleterious(0) probably_damaging(0.93) TCGA-66-2773-01 3 19554594 19554594 C G KCNH8 Missense_Mutation p.R738G 0.24 tolerated(0.16) benign(0.024) TCGA-66-2773-01 3 197421306 197421306 G A KIAA0226 Missense_Mutation p.R542W 0.04 deleterious(0) probably_damaging(1) TCGA-66-2773-01 3 20189783 20189783 C T KAT2B Silent p.I735I 0.21 TCGA-66-2773-01 3 25636025 25636025 G C RARB Missense_Mutation p.E336Q 0.06 tolerated(0.06) benign(0.163) TCGA-66-2773-01 3 27759023 27759023 G C EOMES Missense_Mutation p.I533M 0.04 tolerated(0.22) benign(0.013) TCGA-66-2773-01 3 27763641 27763641 C G EOMES Missense_Mutation p.D49H 0.17 deleterious_low_confidence(0.01) benign(0.162) TCGA-66-2773-01 3 3111880 3111880 G T IL5RA 3'UTR 0.35 TCGA-66-2773-01 3 35778738 35778738 C T ARPP21 Nonsense_Mutation p.R476* 0.07 TCGA-66-2773-01 3 43618347 43618347 C G ANO10 Missense_Mutation p.M333I 0.10 deleterious(0.04) possibly_damaging(0.893) TCGA-66-2773-01 3 4808361 4808361 G C ITPR1 Missense_Mutation p.E1883Q 0.11 tolerated(0.13) benign(0.014) TCGA-66-2773-01 3 48627116 48627116 G A COL7A1 Nonsense_Mutation p.Q696* 0.33 TCGA-66-2773-01 3 49054726 49054726 C T DALRD3 Missense_Mutation p.E288K 0.06 deleterious(0) possibly_damaging(0.834) TCGA-66-2773-01 3 49899591 49899591 G A CAMKV Silent p.I38I 0.25 TCGA-66-2773-01 3 51457744 51457744 C T VPRBP Missense_Mutation p.A465T 0.33 tolerated(0.47) benign(0.164) TCGA-66-2773-01 3 52021212 52021212 G C ACY1 Missense_Mutation p.R236T 0.39 deleterious(0.01) possibly_damaging(0.868) TCGA-66-2773-01 3 52734477 52734477 C G GLT8D1 5'UTR 0.12 TCGA-66-2773-01 3 57494205 57494205 G C DNAH12 Missense_Mutation p.S202C 0.19 tolerated(0.08) benign(0.053) TCGA-66-2773-01 3 63938123 63938123 C T ATXN7 Nonsense_Mutation p.Q155* 0.08 TCGA-66-2773-01 3 64527054 64527054 C T ADAMTS9 Missense_Mutation p.E1777K 0.33 deleterious(0) probably_damaging(1) TCGA-66-2773-01 3 97806185 97806185 C T OR5AC2 Missense_Mutation p.L57F 0.11 deleterious(0.01) probably_damaging(1) TCGA-66-2773-01 4 100268235 100268235 G A ADH1C Missense_Mutation p.P63S 0.16 benign(0.295) TCGA-66-2773-01 4 100815150 100815150 C G LAMTOR3 5'UTR 0.07 TCGA-66-2773-01 4 103718470 103718470 G A UBE2D3 3'Flank 0.22 TCGA-66-2773-01 4 110662037 110662037 G C CFI 3'UTR 0.08 TCGA-66-2773-01 4 11400967 11400967 G A HS3ST1 Silent p.I221I 0.21 TCGA-66-2773-01 4 114280095 114280095 C G ANK2 Missense_Mutation p.R3441G 0.19 benign(0.033) TCGA-66-2773-01 4 13605967 13605967 C G BOD1L1 Missense_Mutation p.D853H 0.11 probably_damaging(0.973) TCGA-66-2773-01 4 146686798 146686798 C G ZNF827 Missense_Mutation p.D985H 0.05 tolerated(0.1) probably_damaging(0.996) TCGA-66-2773-01 4 156841197 156841197 C T TDO2 3'UTR 0.14 TCGA-66-2773-01 4 166254511 166254511 G C MSMO1 5'UTR 0.18 TCGA-66-2773-01 4 17528677 17528677 C A CLRN2 Missense_Mutation p.T224K 0.19 deleterious(0.01) possibly_damaging(0.571) TCGA-66-2773-01 4 177114152 177114152 C G SPATA4 Missense_Mutation p.E142Q 0.14 deleterious(0.04) probably_damaging(0.98) TCGA-66-2773-01 4 177114705 177114705 C G SPATA4 Missense_Mutation p.E83Q 0.24 tolerated(0.09) possibly_damaging(0.617) TCGA-66-2773-01 4 17841431 17841431 C T NCAPG Missense_Mutation p.L867F 0.16 deleterious(0.02) possibly_damaging(0.739) TCGA-66-2773-01 4 184182541 184182541 G T WWC2 Nonsense_Mutation p.E589* 0.20 TCGA-66-2773-01 4 2307005 2307005 G A ZFYVE28 Silent p.D354D 0.23 TCGA-66-2773-01 4 2733610 2733610 G C FAM193A 3'UTR 0.09 TCGA-66-2773-01 4 37592703 37592703 G A C4orf19 3'UTR 0.20 TCGA-66-2773-01 4 57686746 57686746 C A SPINK2 Splice_Site p.X19_splice 0.15 TCGA-66-2773-01 4 57796764 57796764 G C REST Missense_Mutation p.K580N 0.15 deleterious(0) possibly_damaging(0.844) TCGA-66-2773-01 4 57889874 57889874 G A POLR2B Missense_Mutation p.R938Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-66-2773-01 4 69188478 69188478 C T YTHDC1 Silent p.R530R 0.39 TCGA-66-2773-01 4 71510219 71510219 G C ENAM Missense_Mutation p.E1026Q 0.20 deleterious(0.01) benign(0.359) TCGA-66-2773-01 4 72319301 72319301 C T SLC4A4 Missense_Mutation p.S471L 0.18 deleterious(0) probably_damaging(1) TCGA-66-2773-01 4 73012911 73012911 G A NPFFR2 Missense_Mutation p.M317I 0.16 tolerated(0.06) probably_damaging(0.999) TCGA-66-2773-01 4 77662936 77662936 G A SHROOM3 Missense_Mutation p.E1204K 0.42 tolerated(0.35) benign(0.009) TCGA-66-2773-01 4 88723554 88723554 C T IBSP Missense_Mutation p.A14V 0.17 deleterious(0.05) benign(0.257) TCGA-66-2773-01 4 9784820 9784820 C T DRD5 Silent p.I389I 0.10 TCGA-66-2773-01 4 98480068 98480068 C T STPG2 3'UTR 0.33 TCGA-66-2773-01 5 102201876 102201876 C T PAM 5'UTR 0.38 TCGA-66-2773-01 5 11110997 11110997 C G CTNND2 Missense_Mutation p.K812N 0.12 deleterious(0.01) possibly_damaging(0.701) TCGA-66-2773-01 5 125822583 125822583 C T GRAMD3 Silent p.I374I 0.16 TCGA-66-2773-01 5 128990070 128990070 G T ADAMTS19 Missense_Mutation p.D744Y 0.10 deleterious(0) probably_damaging(0.996) TCGA-66-2773-01 5 1294704 1294704 G A TERT Silent p.F99F 0.12 TCGA-66-2773-01 5 140175215 140175215 C T PCDHA2 Silent p.L222L 0.16 TCGA-66-2773-01 5 140203604 140203604 G A PCDHA5 Silent p.S748S 0.47 TCGA-66-2773-01 5 140682556 140682556 T A SLC25A2 Missense_Mutation p.M293L 0.14 tolerated(1) benign(0.001) TCGA-66-2773-01 5 140682557 140682557 C G SLC25A2 Missense_Mutation p.K292N 0.14 deleterious(0.02) benign(0.191) TCGA-66-2773-01 5 141309176 141309176 G A KIAA0141 Missense_Mutation p.D148N 0.12 tolerated(0.18) benign(0.022) TCGA-66-2773-01 5 145537059 145537059 G A LARS Silent p.F324F 0.19 TCGA-66-2773-01 5 148617026 148617026 G A ABLIM3 Missense_Mutation p.E302K 0.06 deleterious(0.02) benign(0.024) TCGA-66-2773-01 5 156022011 156022011 C G SGCD Missense_Mutation p.S151C 0.15 deleterious(0.01) probably_damaging(0.974) TCGA-66-2773-01 5 160061440 160061440 C G ATP10B Missense_Mutation p.K434N 0.25 deleterious(0) probably_damaging(1) TCGA-66-2773-01 5 16067551 16067551 G T MARCH11 3'UTR 0.48 TCGA-66-2773-01 5 169805782 169805782 G T KCNMB1 Missense_Mutation p.L168M 0.39 tolerated(0.13) probably_damaging(1) TCGA-66-2773-01 5 176637166 176637166 C G NSD1 Missense_Mutation p.S589C 0.06 tolerated_low_confidence(0.09) possibly_damaging(0.681) TCGA-66-2773-01 5 19473633 19473633 C T CDH18 Missense_Mutation p.R692K 0.19 tolerated(1) benign(0.089) TCGA-66-2773-01 5 21755941 21755941 C T CDH12 Silent p.A548A 0.52 TCGA-66-2773-01 5 22078939 22078939 G T CDH12 5'UTR 0.55 TCGA-66-2773-01 5 34830955 34830955 C G RAI14 3'Flank 0.15 TCGA-66-2773-01 5 37303458 37303458 C G NUP155 Missense_Mutation p.R1074T 0.07 tolerated(0.24) benign(0.004) TCGA-66-2773-01 5 38407939 38407939 C T EGFLAM Missense_Mutation p.H394Y 0.26 tolerated(0.73) benign(0.003) TCGA-66-2773-01 5 637810 637810 C T CEP72 Silent p.S361S 0.44 TCGA-66-2773-01 5 66427717 66427717 G T MAST4 Silent p.T677T 0.39 TCGA-66-2773-01 5 70808128 70808128 G C BDP1 Missense_Mutation p.E1374Q 0.05 tolerated(0.09) possibly_damaging(0.621) TCGA-66-2773-01 5 72866451 72866451 G A UTP15 Silent p.T196T 0.15 TCGA-66-2773-01 5 78301117 78301117 T A DMGDH Missense_Mutation p.E788D 0.41 deleterious(0.04) probably_damaging(0.914) TCGA-66-2773-01 5 7867058 7867058 C T FASTKD3 Missense_Mutation p.R380K 0.11 tolerated(0.24) benign(0.013) TCGA-66-2773-01 5 78671798 78671798 C G HOMER1 3'UTR 0.10 TCGA-66-2773-01 5 90678636 90678636 C T ARRDC3 Missense_Mutation p.E92K 0.05 tolerated(0.6) benign(0.021) TCGA-66-2773-01 6 102516299 102516299 G T GRIK2 Missense_Mutation p.Q880H 0.10 tolerated(0.06) possibly_damaging(0.806) TCGA-66-2773-01 6 109787325 109787325 G C ZBTB24 Nonsense_Mutation p.S608* 0.05 TCGA-66-2773-01 6 109802560 109802560 C G ZBTB24 Missense_Mutation p.E224Q 0.05 tolerated(0.25) benign(0.041) TCGA-66-2773-01 6 127797202 127797202 C T SOGA3 Missense_Mutation p.E657K 0.09 deleterious(0.02) probably_damaging(0.987) TCGA-66-2773-01 6 130497078 130497078 T G SAMD3 Silent p.R244R 0.09 TCGA-66-2773-01 6 13283796 13283796 T A TBC1D7 Intron 0.15 TCGA-66-2773-01 6 132966255 132966255 G C TAAR1 Missense_Mutation p.N296K 0.11 deleterious(0) probably_damaging(0.992) TCGA-66-2773-01 6 144808687 144808687 C G UTRN Missense_Mutation p.L1276V 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-66-2773-01 6 152577810 152577810 G C SYNE1 Missense_Mutation p.L6355V 0.17 probably_damaging(0.96) TCGA-66-2773-01 6 152772190 152772190 C G SYNE1 Missense_Mutation p.E1060Q 0.03 probably_damaging(0.978) TCGA-66-2773-01 6 16145463 16145463 T C MYLIP Missense_Mutation p.M388T 0.16 tolerated(0.16) benign(0.057) TCGA-66-2773-01 6 17626107 17626107 C G NUP153 Missense_Mutation p.G1278A 0.16 tolerated(0.18) benign(0.339) TCGA-66-2773-01 6 22287673 22287673 G C PRL Silent p.L214L 0.09 TCGA-66-2773-01 6 25509902 25509902 C G LRRC16A Missense_Mutation p.Q472E 0.29 deleterious(0) probably_damaging(0.993) TCGA-66-2773-01 6 26056117 26056117 C T HIST1H1C Silent p.A180A 0.04 TCGA-66-2773-01 6 26158626 26158626 G C HIST1H2BD Missense_Mutation p.E77Q 0.18 deleterious_low_confidence(0) possibly_damaging(0.853) TCGA-66-2773-01 6 26390390 26390390 G C BTN2A2 Missense_Mutation p.K294N 0.06 tolerated(0.08) benign(0.339) TCGA-66-2773-01 6 28056492 28056492 G A ZNF165 Silent p.K234K 0.18 TCGA-66-2773-01 6 28829545 28829545 C T XXbac-BPG308K3.6 RNA 0.35 TCGA-66-2773-01 6 32017311 32017311 C T TNXB 5'Flank 0.23 TCGA-66-2773-01 6 32185863 32185863 C T NOTCH4 Silent p.E511E 0.08 TCGA-66-2773-01 6 33694658 33694658 C T IP6K3 Missense_Mutation p.E147K 0.15 tolerated(0.25) benign(0.025) TCGA-66-2773-01 6 36193102 36193102 G C BRPF3 Silent p.V1080V 0.14 TCGA-66-2773-01 6 44228205 44228205 C T NFKBIE Missense_Mutation p.A394T 0.31 deleterious(0.01) probably_damaging(0.934) TCGA-66-2773-01 6 44414494 44414494 C T CDC5L 3'UTR 0.11 TCGA-66-2773-01 6 45882036 45882036 G T CLIC5 Missense_Mutation p.R332S 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-66-2773-01 6 50712946 50712946 T A TFAP2D Missense_Mutation p.M337K 0.14 deleterious(0.01) benign(0.216) TCGA-66-2773-01 6 51774231 51774231 G C PKHD1 Missense_Mutation p.L2178V 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-66-2773-01 6 56458656 56458656 C T DST Silent p.Q1554Q 0.06 TCGA-66-2773-01 6 72968754 72968754 G A RIMS1 Missense_Mutation p.R998Q 0.22 tolerated(0.14) possibly_damaging(0.566) TCGA-66-2773-01 6 80631373 80631373 C G ELOVL4 Missense_Mutation p.W170C 0.20 deleterious(0) probably_damaging(1) TCGA-66-2773-01 6 88775971 88775971 G C SPACA1 Missense_Mutation p.R268T 0.18 deleterious_low_confidence(0) possibly_damaging(0.72) TCGA-66-2773-01 6 90647949 90647949 G A BACH2 Missense_Mutation p.R653C 0.22 deleterious(0) probably_damaging(0.995) TCGA-66-2773-01 6 99374492 99374492 C T FBXL4 Missense_Mutation p.D125N 0.06 deleterious(0) possibly_damaging(0.848) TCGA-66-2773-01 7 100486450 100486450 C T UFSP1 3'UTR 0.22 TCGA-66-2773-01 7 102769078 102769078 C G NAPEPLD Missense_Mutation p.R49T 0.20 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-66-2773-01 7 11415366 11415366 G A THSD7A 3'UTR 0.16 TCGA-66-2773-01 7 127235360 127235360 G A FSCN3 Splice_Site p.X49_splice 0.11 TCGA-66-2773-01 7 127732213 127732213 G T SND1 3'UTR 0.23 TCGA-66-2773-01 7 128478704 128478704 C T FLNC Missense_Mutation p.R420W 0.22 deleterious(0) probably_damaging(0.927) TCGA-66-2773-01 7 131825488 131825488 A C PLXNA4 Missense_Mutation p.C1770G 0.16 deleterious(0) probably_damaging(0.999) TCGA-66-2773-01 7 135378967 135378967 G A SLC13A4 Silent p.L346L 0.16 TCGA-66-2773-01 7 136939655 136939655 G A PTN Silent p.F22F 0.23 TCGA-66-2773-01 7 143806807 143806807 C A OR2A2 Silent p.I44I 0.21 TCGA-66-2773-01 7 149461956 149461956 G C ZNF467 Missense_Mutation p.C545W 0.13 deleterious(0) probably_damaging(0.999) TCGA-66-2773-01 7 150325214 150325214 T A GIMAP6 Missense_Mutation p.T158S 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-66-2773-01 7 151970887 151970887 C G KMT2C Missense_Mutation p.M305I 0.03 benign(0.012) TCGA-66-2773-01 7 154862633 154862633 C A HTR5A Silent p.T8T 0.17 TCGA-66-2773-01 7 156799191 156799191 G C MNX1 Silent p.L278L 0.07 TCGA-66-2773-01 7 158902523 158902523 C T VIPR2 Missense_Mutation p.S80N 0.18 tolerated(0.32) benign(0.038) TCGA-66-2773-01 7 2284336 2284336 G A NUDT1 Missense_Mutation p.E66K 0.17 deleterious(0.02) probably_damaging(0.989) TCGA-66-2773-01 7 2284345 2284345 G A NUDT1 Missense_Mutation p.E69K 0.17 tolerated(0.2) benign(0.029) TCGA-66-2773-01 7 2552840 2552840 G A LFNG Missense_Mutation p.E33K 0.07 deleterious_low_confidence(0) benign(0) TCGA-66-2773-01 7 28996473 28996473 C A AC005013.5 5'Flank 0.11 TCGA-66-2773-01 7 30491410 30491410 G A NOD1 Silent p.L541L 0.05 TCGA-66-2773-01 7 30492088 30492088 G A NOD1 Silent p.A315A 0.08 TCGA-66-2773-01 7 4007005 4007005 G A SDK1 Missense_Mutation p.M495I 0.09 tolerated(0.07) benign(0.158) TCGA-66-2773-01 7 44152268 44152268 C A AEBP1 Missense_Mutation p.R777S 0.33 deleterious(0.02) probably_damaging(0.95) TCGA-66-2773-01 7 45699709 45699709 G T ADCY1 Missense_Mutation p.G459V 0.31 deleterious(0) probably_damaging(0.979) TCGA-66-2773-01 7 5104735 5104735 G A RBAK Missense_Mutation p.E550K 0.13 tolerated(0.05) benign(0.185) TCGA-66-2773-01 7 55872950 55872950 C A SEPT14 Splice_Site p.X373_splice 0.23 TCGA-66-2773-01 7 63726340 63726340 T G ZNF679 Missense_Mutation p.V110G 0.16 deleterious(0.03) probably_damaging(0.996) TCGA-66-2773-01 7 64168243 64168243 G C ZNF107 Missense_Mutation p.E521Q 0.08 deleterious(0.01) benign(0.406) TCGA-66-2773-01 7 6464443 6464443 C A DAGLB Silent p.V360V 0.32 TCGA-66-2773-01 7 75228554 75228554 G C HIP1 Missense_Mutation p.I44M 0.04 deleterious(0.01) probably_damaging(0.961) TCGA-66-2773-01 7 77885473 77885473 C A MAGI2 Missense_Mutation p.A612S 0.12 deleterious(0.03) benign(0.438) TCGA-66-2773-01 7 8475317 8475317 C T NXPH1 5'UTR 0.19 TCGA-66-2773-01 7 94540111 94540111 C G PPP1R9A Nonsense_Mutation p.S229* 0.20 TCGA-66-2773-01 7 95157214 95157214 T A ASB4 Missense_Mutation p.F193I 0.15 deleterious(0.04) benign(0.266) TCGA-66-2773-01 7 95166990 95166990 C A ASB4 Nonsense_Mutation p.C400* 0.16 TCGA-66-2773-01 7 98645447 98645447 G C SMURF1 Missense_Mutation p.L364V 0.06 tolerated(0.63) benign(0) TCGA-66-2773-01 8 100133571 100133571 G T VPS13B Silent p.G368G 0.12 TCGA-66-2773-01 8 100733161 100733161 G A VPS13B Missense_Mutation p.M2337I 0.06 deleterious(0) benign(0.009) TCGA-66-2773-01 8 101252722 101252722 C T SPAG1 Missense_Mutation p.S791L 0.05 tolerated(0.18) benign(0.004) TCGA-66-2773-01 8 104330835 104330835 A T FZD6 Silent p.A65A 0.23 TCGA-66-2773-01 8 113318394 113318394 G A CSMD3 Missense_Mutation p.P2638L 0.10 deleterious(0) possibly_damaging(0.781) TCGA-66-2773-01 8 113988322 113988322 C A CSMD3 Missense_Mutation p.R362S 0.08 tolerated(0.49) benign(0) TCGA-66-2773-01 8 11415529 11415529 G C BLK Silent p.L337L 0.22 TCGA-66-2773-01 8 124054246 124054246 G A DERL1 Silent p.L39L 0.18 TCGA-66-2773-01 8 12960310 12960310 G C DLC1 Missense_Mutation p.H519D 0.15 deleterious(0.04) benign(0.266) TCGA-66-2773-01 8 136619236 136619236 G A KHDRBS3 Silent p.Q282Q 0.10 TCGA-66-2773-01 8 139380153 139380153 C G FAM135B Missense_Mutation p.R25T 0.05 deleterious(0) possibly_damaging(0.898) TCGA-66-2773-01 8 139734314 139734314 C A COL22A1 Missense_Mutation p.G756W 0.29 unknown(0) TCGA-66-2773-01 8 144773378 144773378 G T ZNF707 Intron 0.19 TCGA-66-2773-01 8 145059165 145059165 C T PARP10 Silent p.L335L 0.12 TCGA-66-2773-01 8 145140222 145140222 C T GPAA1 Silent p.L431L 0.36 TCGA-66-2773-01 8 145726940 145726940 G A PPP1R16A Missense_Mutation p.R414Q 0.23 tolerated(0.53) benign(0.005) TCGA-66-2773-01 8 18257600 18257600 G T NAT2 Missense_Mutation p.E29D 0.27 deleterious(0) benign(0.073) TCGA-66-2773-01 8 19805770 19805770 C G LPL Silent p.L56L 0.11 TCGA-66-2773-01 8 24255215 24255215 C A ADAMDEC1 Missense_Mutation p.A216E 0.24 tolerated(0.31) benign(0.09) TCGA-66-2773-01 8 24771781 24771781 G T NEFM Missense_Mutation p.A159S 0.35 tolerated(0.28) unknown(0) TCGA-66-2773-01 8 27634195 27634195 G C ESCO2 Missense_Mutation p.E124Q 0.34 deleterious(0.03) possibly_damaging(0.548) TCGA-66-2773-01 8 3224707 3224707 C T CSMD1 Missense_Mutation p.E988K 0.08 probably_damaging(0.998) TCGA-66-2773-01 8 37607111 37607111 A T ERLIN2 Missense_Mutation p.Q153H 0.25 deleterious(0) probably_damaging(0.996) TCGA-66-2773-01 8 38111095 38111095 C G DDHD2 Missense_Mutation p.S638C 0.14 deleterious(0.02) benign(0.009) TCGA-66-2773-01 8 39782819 39782819 G A IDO1 Missense_Mutation p.G262D 0.30 deleterious(0) probably_damaging(0.999) TCGA-66-2773-01 8 41519460 41519460 C G ANK1 Splice_Site p.X1868_splice 0.21 TCGA-66-2773-01 8 42693375 42693375 C G THAP1 Missense_Mutation p.Q124H 0.11 tolerated(0.11) benign(0.001) TCGA-66-2773-01 8 52258427 52258427 C A PXDNL Missense_Mutation p.D1328Y 0.06 deleterious(0) benign(0.022) TCGA-66-2773-01 8 54963582 54963582 G A LYPLA1 Missense_Mutation p.S210L 0.04 deleterious(0.02) benign(0.424) TCGA-66-2773-01 8 7320337 7320337 G A SPAG11B Missense_Mutation p.L36F 0.12 deleterious(0.05) possibly_damaging(0.501) TCGA-66-2773-01 8 7706257 7706257 C T SPAG11A Missense_Mutation p.L36F 0.18 tolerated(0.06) benign(0.102) TCGA-66-2773-01 8 77618013 77618013 G A ZFHX4 Missense_Mutation p.A564T 0.30 benign(0.003) TCGA-66-2773-01 8 77763196 77763196 G T ZFHX4 Nonsense_Mutation p.E1347* 0.35 TCGA-66-2773-01 8 86388026 86388026 G - CA2 Splice_Site p.X149_splice 0.20 TCGA-66-2773-01 8 8873888 8873888 C G ERI1 Missense_Mutation p.F185L 0.04 deleterious(0) probably_damaging(0.996) TCGA-66-2773-01 8 9623228 9623228 G C TNKS Missense_Mutation p.L1158F 0.09 deleterious(0) probably_damaging(0.998) TCGA-66-2773-01 8 97263175 97263176 - T MTERFD1 Frame_Shift_Ins p.N212Kfs*7 0.13 TCGA-66-2773-01 8 98731283 98731283 G A MTDH Missense_Mutation p.E463K 0.12 deleterious(0) benign(0.423) TCGA-66-2773-01 8 98831389 98831389 G A LAPTM4B Missense_Mutation p.D235N 0.13 tolerated(0.08) possibly_damaging(0.609) TCGA-66-2773-01 9 101980675 101980675 C G ALG2 Silent p.L264L 0.10 TCGA-66-2773-01 9 107584880 107584880 G A ABCA1 Nonsense_Mutation p.R909* 0.21 TCGA-66-2773-01 9 116359128 116359128 G T RGS3 Missense_Mutation p.Q1164H 0.20 deleterious(0) probably_damaging(1) TCGA-66-2773-01 9 121976431 121976431 G A BRINP1 Missense_Mutation p.L230F 0.05 deleterious(0.01) benign(0.121) TCGA-66-2773-01 9 134350753 134350753 G T PRRC2B Silent p.R1079R 0.20 TCGA-66-2773-01 9 135073852 135073852 A G NTNG2 Missense_Mutation p.E238G 0.15 deleterious(0) probably_damaging(0.94) TCGA-66-2773-01 9 16436263 16436263 C T BNC2 Silent p.E643E 0.21 TCGA-66-2773-01 9 19316466 19316466 C G DENND4C Missense_Mutation p.C513W 0.04 deleterious(0) probably_damaging(0.99) TCGA-66-2773-01 9 21227825 21227825 C T IFNA17 Silent p.L116L 0.09 TCGA-66-2773-01 9 32984745 32984745 C A APTX Missense_Mutation p.R218S 0.23 tolerated(0.48) benign(0.004) TCGA-66-2773-01 9 40716216 40716216 T A FAM74A3 RNA 0.10 TCGA-66-2773-01 9 6328993 6328993 C G TPD52L3 Nonsense_Mutation p.S133* 0.09 TCGA-66-2773-01 9 72746522 72746522 C G MAMDC2 Missense_Mutation p.Q330E 0.17 tolerated(0.4) benign(0.123) TCGA-66-2773-01 9 77455049 77455049 G T TRPM6 Silent p.G145G 0.19 TCGA-66-2773-01 9 79947023 79947023 C T VPS13A Missense_Mutation p.S2030F 0.04 deleterious(0.01) benign(0.049) TCGA-66-2773-01 9 80144091 80144091 C G GNA14 Missense_Mutation p.R68T 0.20 tolerated(0.08) probably_damaging(0.966) TCGA-66-2773-01 9 80858453 80858453 G T CEP78 Missense_Mutation p.A227S 0.17 tolerated(0.48) probably_damaging(0.994) TCGA-66-2773-01 9 8518114 8518114 G T PTPRD Missense_Mutation p.A426E 0.49 deleterious(0.03) probably_damaging(0.999) TCGA-66-2773-01 9 95610355 95610355 G C ZNF484 Silent p.L240L 0.04 TCGA-66-2773-01 9 97063487 97063487 C T ZNF169 Silent p.R549R 0.18 TCGA-66-2773-01 X 100601326 100601326 C T TIMM8A 3'UTR 0.25 TCGA-66-2773-01 X 101396087 101396087 C T TCEAL6 Missense_Mutation p.E73K 0.24 tolerated(0.33) benign(0.018) TCGA-66-2773-01 X 102529495 102529495 G A TCEAL5 5'UTR 0.04 TCGA-66-2773-01 X 134185839 134185839 C A FAM127B Missense_Mutation p.E100D 0.26 tolerated(0.07) benign(0.057) TCGA-66-2773-01 X 138619261 138619261 G C F9 Missense_Mutation p.E61Q 0.03 deleterious(0) probably_damaging(0.999) TCGA-66-2773-01 X 140953370 140953370 C T MAGEC3 Silent p.V79V 0.50 TCGA-66-2773-01 X 140985492 140985492 C T MAGEC3 Silent p.S602S 0.23 TCGA-66-2773-01 X 142605268 142605268 G C SPANXN3 5'UTR 0.10 TCGA-66-2773-01 X 144904038 144904038 G C SLITRK2 Missense_Mutation p.R32P 0.50 tolerated(0.34) benign(0.03) TCGA-66-2773-01 X 144906362 144906362 C T SLITRK2 Missense_Mutation p.P807S 0.21 tolerated(0.05) possibly_damaging(0.45) TCGA-66-2773-01 X 151935416 151935416 C A MAGEA3 Missense_Mutation p.V251L 0.57 deleterious(0) benign(0.401) TCGA-66-2773-01 X 153069296 153069296 G T PDZD4 Silent p.R608R 0.31 TCGA-66-2773-01 X 153171764 153171764 G C AVPR2 Missense_Mutation p.K268N 0.17 deleterious(0.02) probably_damaging(1) TCGA-66-2773-01 X 153173229 153173229 G C ARHGAP4 Nonsense_Mutation p.S972* 0.25 TCGA-66-2773-01 X 153173337 153173337 G C ARHGAP4 Missense_Mutation p.S936C 0.25 deleterious(0.01) possibly_damaging(0.503) TCGA-66-2773-01 X 1584849 1584849 C A P2RY8 Silent p.L201L 0.19 TCGA-66-2773-01 X 16170735 16170735 C T GRPR Silent p.I374I 0.41 TCGA-66-2773-01 X 322173 322173 C T PPP2R3B Silent p.R159R 0.19 TCGA-66-2773-01 X 3573384 3573384 G A PRKX Silent p.F135F 0.47 TCGA-66-2773-01 X 46918534 46918534 A C JADE3 3'UTR 0.35 TCGA-66-2773-01 X 53634648 53634648 C T HUWE1 Missense_Mutation p.E778K 0.33 probably_damaging(0.912) TCGA-66-2773-01 X 54814948 54814948 C T ITIH6 Missense_Mutation p.D251N 0.07 deleterious(0.02) probably_damaging(0.974) TCGA-66-2773-01 X 62885838 62885838 G A ARHGEF9 Silent p.I328I 0.12 TCGA-66-2773-01 X 84306418 84306418 G T APOOL Silent p.P48P 0.51 TCGA-66-2773-01 X 91873448 91873448 C T PCDH11X Missense_Mutation p.H1185Y 0.20 tolerated_low_confidence(1) benign(0) TCGA-66-2773-01 X 96139863 96139863 C G RPA4 Nonsense_Mutation p.S185* 0.10 TCGA-66-2773-01 Y 4967796 4967796 T A PCDH11Y Missense_Mutation p.V726E 0.29 tolerated(0.07) benign(0.106) TCGA-66-2777-01 10 104171506 104171506 G A PSD Nonsense_Mutation p.Q634* 0.10 TCGA-66-2777-01 10 116596002 116596002 A G FAM160B1 Silent p.L173L 0.26 TCGA-66-2777-01 10 133106502 133106502 C T TCERG1L Silent p.T214T 0.23 TCGA-66-2777-01 10 133930716 133930716 C T JAKMIP3 Missense_Mutation p.R91C 0.12 deleterious(0) probably_damaging(1) TCGA-66-2777-01 10 15559120 15559120 C T ITGA8 3'UTR 0.29 TCGA-66-2777-01 10 55566745 55566745 G T PCDH15 Missense_Mutation p.A1547E 0.18 deleterious_low_confidence(0.01) benign(0.057) TCGA-66-2777-01 10 55582824 55582824 G A PCDH15 Silent p.P1556P 0.16 TCGA-66-2777-01 10 68687433 68687433 C A LRRTM3 Missense_Mutation p.S253R 0.22 tolerated(0.35) possibly_damaging(0.574) TCGA-66-2777-01 10 71678051 71678051 G A COL13A1 Missense_Mutation p.G336E 0.24 deleterious(0) probably_damaging(0.99) TCGA-66-2777-01 11 102667842 102667842 A T MMP1 Silent p.I134I 0.22 TCGA-66-2777-01 11 123777604 123777604 G A OR8D4 Missense_Mutation p.A156T 0.21 deleterious(0.02) benign(0.058) TCGA-66-2777-01 11 124766107 124766107 C T ROBO4 Silent p.R222R 0.25 TCGA-66-2777-01 11 22249017 22249017 G T ANO5 Missense_Mutation p.S178I 0.19 tolerated(0.17) benign(0.032) TCGA-66-2777-01 11 281697 281697 G A NLRP6 Missense_Mutation p.D655N 0.22 deleterious(0) possibly_damaging(0.906) TCGA-66-2777-01 11 55371597 55371597 A T OR4C11 Missense_Mutation p.S85T 0.18 tolerated(0.42) benign(0.011) TCGA-66-2777-01 11 55432849 55432849 C A OR4C6 Silent p.V69V 0.23 TCGA-66-2777-01 11 56020624 56020624 C A OR5T3 Missense_Mutation p.P317T 0.15 deleterious(0) probably_damaging(0.991) TCGA-66-2777-01 11 5757757 5757758 TG - OR56B1 Frame_Shift_Del p.M4Ifs*9 0.25 TCGA-66-2777-01 11 59211379 59211379 G A OR5A1 Silent p.S246S 0.23 TCGA-66-2777-01 11 65396071 65396071 G A PCNXL3 Nonsense_Mutation p.W1236* 0.22 TCGA-66-2777-01 11 6806907 6806907 T A OR2AG1 Silent p.A213A 0.25 TCGA-66-2777-01 11 75160035 75160035 C T GDPD5 Missense_Mutation p.R234H 0.27 deleterious(0) probably_damaging(0.973) TCGA-66-2777-01 11 8732709 8732709 G A ST5 Missense_Mutation p.P748S 0.19 deleterious(0) probably_damaging(1) TCGA-66-2777-01 11 95825560 95825560 C A MAML2 Silent p.P545P 0.19 TCGA-66-2777-01 12 10342551 10342551 C A TMEM52B Missense_Mutation p.H102N 0.10 tolerated(0.07) possibly_damaging(0.707) TCGA-66-2777-01 12 113835191 113835191 G A SDS Silent p.G144G 0.20 TCGA-66-2777-01 12 117610395 117610395 T A FBXO21 Silent p.T298T 0.28 TCGA-66-2777-01 12 12317355 12317355 A C LRP6 Missense_Mutation p.L635W 0.06 deleterious(0) probably_damaging(0.995) TCGA-66-2777-01 12 130847603 130847603 C T PIWIL1 Silent p.G703G 0.25 TCGA-66-2777-01 12 14792812 14792812 T C GUCY2C Missense_Mutation p.E714G 0.24 tolerated(0.55) benign(0.006) TCGA-66-2777-01 12 50189134 50189134 T C NCKAP5L Missense_Mutation p.K837E 0.11 tolerated(0.18) probably_damaging(0.94) TCGA-66-2777-01 12 50196740 50196740 C A NCKAP5L Splice_Site p.X77_splice 0.23 TCGA-66-2777-01 12 54059103 54059103 T C ATP5G2 Missense_Mutation p.M198V 0.25 deleterious_low_confidence(0.02) benign(0.222) TCGA-66-2777-01 12 55794749 55794749 C A OR6C65 Missense_Mutation p.S146Y 0.25 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-66-2777-01 12 57398015 57398015 G A ZBTB39 Silent p.L229L 0.12 TCGA-66-2777-01 12 6058318 6058318 C T VWF Missense_Mutation p.D2769N 0.27 tolerated(0.17) benign(0.011) TCGA-66-2777-01 12 64238638 64238638 A G SRGAP1 Missense_Mutation p.I14M 0.09 tolerated(0.07) benign(0.128) TCGA-66-2777-01 12 6690881 6690881 T C CHD4 Missense_Mutation p.K1539E 0.26 tolerated(0.16) possibly_damaging(0.636) TCGA-66-2777-01 12 72050788 72050788 C G ZFC3H1 Missense_Mutation p.A298P 0.22 deleterious(0) probably_damaging(0.997) TCGA-66-2777-01 13 26127982 26127982 A T ATP8A2 Missense_Mutation p.Y370F 0.25 tolerated(0.32) probably_damaging(0.999) TCGA-66-2777-01 14 103390101 103390101 G A AMN Missense_Mutation p.A33T 0.16 deleterious(0.02) benign(0.1) TCGA-66-2777-01 14 107199139 107199139 G A IGHV3-72 Silent p.D50D 0.14 TCGA-66-2777-01 14 20528999 20528999 G C OR4L1 Missense_Mutation p.A266P 0.31 tolerated(0.33) benign(0.033) TCGA-66-2777-01 14 21502245 21502245 C A RNASE13 Missense_Mutation p.C68F 0.32 deleterious(0) probably_damaging(1) TCGA-66-2777-01 14 52734677 52734677 T G PTGDR Missense_Mutation p.C49G 0.14 tolerated(0.13) benign(0.01) TCGA-66-2777-01 14 74975375 74975375 C T LTBP2 Missense_Mutation p.S1195N 0.29 deleterious(0) probably_damaging(0.917) TCGA-66-2777-01 15 23318599 23318599 T A HERC2P2 RNA 0.10 TCGA-66-2777-01 15 25492329 25492329 A G SNORD115-40 3'Flank 0.12 TCGA-66-2777-01 15 25936908 25936908 T A ATP10A Missense_Mutation p.Q1040L 0.20 deleterious(0) probably_damaging(0.978) TCGA-66-2777-01 15 48431199 48431199 A G SLC24A5 Missense_Mutation p.D302G 0.26 tolerated(0.14) benign(0.001) TCGA-66-2777-01 15 78475066 78475066 T A ACSBG1 Missense_Mutation p.K242M 0.07 deleterious(0) probably_damaging(0.969) TCGA-66-2777-01 15 84611716 84611716 C T ADAMTSL3 Missense_Mutation p.T791M 0.24 tolerated(0.09) possibly_damaging(0.746) TCGA-66-2777-01 15 88726675 88726675 A C NTRK3 Missense_Mutation p.F123L 0.10 deleterious(0) probably_damaging(0.919) TCGA-66-2777-01 16 14029165 14029165 C T ERCC4 Missense_Mutation p.S459L 0.20 tolerated(0.09) benign(0.027) TCGA-66-2777-01 16 16349574 16349574 T C NOMO3 Intron 0.27 TCGA-66-2777-01 16 20812550 20812550 T A ERI2 Missense_Mutation p.K145N 0.20 deleterious(0.05) benign(0.072) TCGA-66-2777-01 16 28515293 28515293 T A IL27 Missense_Mutation p.Q37L 0.27 tolerated_low_confidence(0.19) benign(0) TCGA-66-2777-01 16 30583558 30583558 C G ZNF688 5'UTR 0.15 TCGA-66-2777-01 16 3544708 3544708 G C C16orf90 Missense_Mutation p.H72Q 0.23 deleterious_low_confidence(0.04) benign(0.064) TCGA-66-2777-01 16 4827908 4827908 G A SEPT12 Missense_Mutation p.R323C 0.30 deleterious(0.02) possibly_damaging(0.873) TCGA-66-2777-01 16 83712002 83712002 G T CDH13 Missense_Mutation p.V539L 0.23 tolerated(0.1) benign(0.015) TCGA-66-2777-01 16 89858948 89858948 A G FANCA Silent p.D338D 0.18 TCGA-66-2777-01 16 89936619 89936619 G A SPIRE2 Missense_Mutation p.R695Q 0.16 deleterious(0.02) benign(0.036) TCGA-66-2777-01 17 40113408 40113408 C T TTC25 RNA 0.20 TCGA-66-2777-01 17 67152038 67152038 G T ABCA10 Missense_Mutation p.P1162T 0.16 tolerated(0.22) benign(0.15) TCGA-66-2777-01 17 7133693 7133693 C G DVL2 Silent p.R107R 0.15 TCGA-66-2777-01 17 7407096 7407096 T C POLR2A Missense_Mutation p.F1076L 0.25 probably_damaging(0.997) TCGA-66-2777-01 17 7577538 7577538 C A TP53 Missense_Mutation p.R248L 0.27 deleterious(0) probably_damaging(1) TCGA-66-2777-01 18 22805027 22805027 T C ZNF521 Missense_Mutation p.H952R 0.23 deleterious(0) probably_damaging(0.999) TCGA-66-2777-01 18 29125982 29125982 C T DSG2 Missense_Mutation p.S878L 0.26 deleterious(0.04) benign(0.014) TCGA-66-2777-01 18 61390595 61390595 A - SERPINB11 Frame_Shift_Del p.N381Tfs*? 0.21 TCGA-66-2777-01 18 6973094 6973094 T C LAMA1 Missense_Mutation p.T2246A 0.22 tolerated(1) probably_damaging(0.955) TCGA-66-2777-01 18 8798272 8798272 G T SOGA2 Nonsense_Mutation p.G807* 0.23 TCGA-66-2777-01 19 10602907 10602907 G T KEAP1 Missense_Mutation p.S224Y 0.30 deleterious(0) probably_damaging(0.976) TCGA-66-2777-01 19 40318157 40318157 G C DYRK1B Missense_Mutation p.S316C 0.45 deleterious(0.03) benign(0.021) TCGA-66-2777-01 19 52380565 52380565 C T ZNF577 Missense_Mutation p.E85K 0.27 tolerated(0.08) possibly_damaging(0.587) TCGA-66-2777-01 19 57327379 57327379 C G PEG3 Missense_Mutation p.D811H 0.09 tolerated(0.14) possibly_damaging(0.469) TCGA-66-2777-01 19 57328935 57328935 A T PEG3 Missense_Mutation p.M292K 0.09 deleterious(0) benign(0.156) TCGA-66-2777-01 19 58238825 58238825 T G ZNF671 Missense_Mutation p.R24S 0.20 tolerated(0.33) benign(0.004) TCGA-66-2777-01 1 100614189 100614189 G C TRMT13 Missense_Mutation p.S420T 0.40 tolerated(1) benign(0.005) TCGA-66-2777-01 1 103480073 103480073 C T COL11A1 Silent p.Q522Q 0.32 TCGA-66-2777-01 1 120279815 120279815 G A PHGDH Missense_Mutation p.A291T 0.43 deleterious(0) probably_damaging(0.999) TCGA-66-2777-01 1 12943166 12943166 C T PRAMEF4 Missense_Mutation p.R17Q 0.35 tolerated(1) benign(0.002) TCGA-66-2777-01 1 145109536 145109536 G A SEC22B RNA 0.03 TCGA-66-2777-01 1 149785213 149785213 G A HIST2H3D Silent p.A8A 0.26 TCGA-66-2777-01 1 150971905 150971905 C T FAM63A Silent p.K355K 0.39 TCGA-66-2777-01 1 153920731 153920731 C G CRTC2 Missense_Mutation p.A646P 0.15 tolerated(0.28) benign(0.14) TCGA-66-2777-01 1 156845314 156845314 C A NTRK1 Missense_Mutation p.P453T 0.39 deleterious(0.03) benign(0.006) TCGA-66-2777-01 1 156933370 156933370 G A ARHGEF11 Missense_Mutation p.P327L 0.06 tolerated(0.2) benign(0.013) TCGA-66-2777-01 1 167095218 167095218 G C DUSP27 Missense_Mutation p.E284Q 0.18 tolerated(0.09) benign(0.037) TCGA-66-2777-01 1 173155730 173155730 G A TNFSF4 Silent p.S159S 0.10 TCGA-66-2777-01 1 196884210 196884210 G C CFHR4 Missense_Mutation p.Q493H 0.31 deleterious(0.01) benign(0.216) TCGA-66-2777-01 1 215848479 215848479 T C USH2A Silent p.T4258T 0.39 TCGA-66-2777-01 1 229770687 229770687 G A URB2 Silent p.E109E 0.06 TCGA-66-2777-01 1 237936937 237936937 G T RYR2 Nonsense_Mutation p.E3922* 0.26 TCGA-66-2777-01 1 247053361 247053361 T C AHCTF1 Missense_Mutation p.D693G 0.16 deleterious(0.01) probably_damaging(0.994) TCGA-66-2777-01 1 248031301 248031301 C T TRIM58 Silent p.I269I 0.30 TCGA-66-2777-01 1 248308992 248308992 C T OR2M5 Silent p.F181F 0.11 TCGA-66-2777-01 1 248458744 248458744 A T OR2T12 Missense_Mutation p.L46Q 0.12 deleterious(0) probably_damaging(0.988) TCGA-66-2777-01 1 47607784 47607784 C G CYP4A22 Nonsense_Mutation p.Y129* 0.28 TCGA-66-2777-01 1 53262037 53262037 G T ZYG11B Missense_Mutation p.A470S 0.16 tolerated(0.61) benign(0.025) TCGA-66-2777-01 1 60456334 60456334 T C C1orf87 3'UTR 0.32 TCGA-66-2777-01 1 75037416 75037416 T A C1orf173 Silent p.T1326T 0.34 TCGA-66-2777-01 1 92613244 92613244 G T BTBD8 Missense_Mutation p.W341C 0.24 deleterious(0.05) benign(0.02) TCGA-66-2777-01 20 23728456 23728456 G T CST1 Silent p.S141S 0.17 TCGA-66-2777-01 20 23728457 23728457 G T CST1 Missense_Mutation p.S141Y 0.17 deleterious(0) benign(0.029) TCGA-66-2777-01 20 34025387 34025387 G T GDF5 Missense_Mutation p.P108T 0.10 tolerated_low_confidence(1) probably_damaging(0.981) TCGA-66-2777-01 20 398440 398440 G A RBCK1 Missense_Mutation p.R109Q 0.22 tolerated(0.66) benign(0.005) TCGA-66-2777-01 20 420942 420942 C G TBC1D20 Missense_Mutation p.D240H 0.19 deleterious(0) probably_damaging(0.927) TCGA-66-2777-01 20 44352615 44352615 T A SPINT4 Missense_Mutation p.F71Y 0.23 tolerated(1) benign(0.006) TCGA-66-2777-01 20 51872316 51872316 G A TSHZ2 Silent p.K773K 0.29 TCGA-66-2777-01 20 57484842 57484842 G C GNAS Missense_Mutation p.K917N 0.13 deleterious(0.03) probably_damaging(1) TCGA-66-2777-01 20 58348476 58348476 C G PHACTR3 Missense_Mutation p.H298Q 0.24 tolerated(0.24) probably_damaging(0.981) TCGA-66-2777-01 20 5903669 5903669 C T CHGB Silent p.S293S 0.10 TCGA-66-2777-01 20 5963711 5963711 G A MCM8 Missense_Mutation p.G545S 0.06 deleterious(0.02) probably_damaging(0.985) TCGA-66-2777-01 21 33074583 33074583 A T SCAF4 Missense_Mutation p.V144E 0.32 benign(0.053) TCGA-66-2777-01 21 44520566 44520566 G A U2AF1 Missense_Mutation p.R66C 0.04 tolerated(0.18) possibly_damaging(0.471) TCGA-66-2777-01 22 21096998 21096998 T C PI4KA Missense_Mutation p.K1171E 0.39 tolerated(0.57) benign(0.002) TCGA-66-2777-01 22 29442802 29442802 C T ZNRF3 Silent p.A281A 0.41 TCGA-66-2777-01 22 35802676 35802676 G A MCM5 Missense_Mutation p.R185H 0.08 tolerated(0.08) possibly_damaging(0.628) TCGA-66-2777-01 22 37578126 37578126 G A C1QTNF6 3'UTR 0.24 TCGA-66-2777-01 22 39122021 39122021 A T GTPBP1 Missense_Mutation p.I362L 0.09 deleterious(0) probably_damaging(0.964) TCGA-66-2777-01 2 106694236 106694236 A T C2orf40 Missense_Mutation p.I101F 0.12 deleterious(0.01) benign(0.372) TCGA-66-2777-01 2 120889225 120889225 G T EPB41L5 Missense_Mutation p.Q511H 0.09 tolerated(0.23) benign(0.002) TCGA-66-2777-01 2 132010529 132010529 C T POTEE Silent p.H545H 0.08 TCGA-66-2777-01 2 135884226 135884226 G T RAB3GAP1 Missense_Mutation p.G325C 0.25 deleterious(0.01) probably_damaging(0.954) TCGA-66-2777-01 2 136873271 136873271 T C CXCR4 Missense_Mutation p.Y80C 0.16 deleterious(0) probably_damaging(1) TCGA-66-2777-01 2 165754917 165754917 G A SLC38A11 3'UTR 0.12 TCGA-66-2777-01 2 170002329 170002329 C T LRP2 Missense_Mutation p.E4306K 0.22 benign(0.196) TCGA-66-2777-01 2 170038679 170038679 A T LRP2 Nonsense_Mutation p.Y3332* 0.26 TCGA-66-2777-01 2 179421741 179421741 G A TTN Silent p.G29380G 0.27 TCGA-66-2777-01 2 18736983 18736983 C T RDH14 Missense_Mutation p.G162E 0.34 deleterious(0) probably_damaging(0.99) TCGA-66-2777-01 2 202609061 202609061 T A ALS2 Missense_Mutation p.E697V 0.22 deleterious(0) probably_damaging(0.997) TCGA-66-2777-01 2 204309573 204309573 T C RAPH1 Intron 0.26 TCGA-66-2777-01 2 215855660 215855660 G A ABCA12 Silent p.I1130I 0.20 TCGA-66-2777-01 2 242174551 242174551 G C HDLBP Silent p.A1043A 0.07 TCGA-66-2777-01 2 71036442 71036442 G A CLEC4F Silent p.F577F 0.40 TCGA-66-2777-01 2 79350070 79350070 C T REG1A Missense_Mutation p.S142L 0.21 tolerated(0.22) possibly_damaging(0.881) TCGA-66-2777-01 2 96873906 96873906 C A STARD7 Missense_Mutation p.R89S 0.23 deleterious(0.01) possibly_damaging(0.726) TCGA-66-2777-01 3 108549571 108549571 C G TRAT1 Missense_Mutation p.A21G 0.30 tolerated(0.06) probably_damaging(0.921) TCGA-66-2777-01 3 118865136 118865136 G T C3orf30 Missense_Mutation p.D34Y 0.31 tolerated(0.11) benign(0.011) TCGA-66-2777-01 3 120461339 120461339 G T RABL3 Silent p.R6R 0.12 TCGA-66-2777-01 3 127398972 127398972 C T ABTB1 Missense_Mutation p.R392C 0.19 tolerated(0.05) benign(0) TCGA-66-2777-01 3 129158704 129158704 C T MBD4 5'UTR 0.31 TCGA-66-2777-01 3 148459391 148459391 C A AGTR1 Missense_Mutation p.T190N 0.08 tolerated(0.54) benign(0.004) TCGA-66-2777-01 3 150659451 150659451 G T CLRN1 Silent p.A117A 0.23 TCGA-66-2777-01 3 153870648 153870648 A T ARHGEF26 Missense_Mutation p.S472C 0.26 deleterious(0.04) benign(0.021) TCGA-66-2777-01 3 169487354 169487354 A G ACTRT3 5'UTR 0.53 TCGA-66-2777-01 3 172351674 172351674 G A NCEH1 Missense_Mutation p.S313L 0.05 deleterious(0.04) possibly_damaging(0.628) TCGA-66-2777-01 3 186457173 186457173 C T KNG1 Silent p.Y365Y 0.27 TCGA-66-2777-01 3 25686854 25686854 T G TOP2B Silent p.T54T 0.28 TCGA-66-2777-01 3 43122452 43122452 G A POMGNT2 Missense_Mutation p.R158C 0.04 deleterious(0) probably_damaging(0.993) TCGA-66-2777-01 3 50324115 50324115 G A LSMEM2 Silent p.L61L 0.16 TCGA-66-2777-01 3 97499500 97499500 A G ARL6 Missense_Mutation p.Y76C 0.38 deleterious(0.03) possibly_damaging(0.67) TCGA-66-2777-01 4 111463936 111463936 G T ENPEP Nonsense_Mutation p.G613* 0.25 TCGA-66-2777-01 4 126372722 126372722 C T FAT4 Silent p.V3517V 0.27 TCGA-66-2777-01 4 158254042 158254042 A G GRIA2 Silent p.R318R 0.20 TCGA-66-2777-01 4 3029676 3029676 G A GRK4 Silent p.E336E 0.33 TCGA-66-2777-01 4 36126522 36126522 G C ARAP2 Missense_Mutation p.N1236K 0.28 deleterious(0) probably_damaging(0.955) TCGA-66-2777-01 4 46307591 46307591 T A GABRA2 Missense_Mutation p.S233C 0.23 deleterious(0.01) probably_damaging(0.992) TCGA-66-2777-01 4 5468481 5468481 G C STK32B Missense_Mutation p.E321Q 0.33 deleterious(0.03) probably_damaging(0.934) TCGA-66-2777-01 4 84376685 84376710 TTTCCGCCTCCTGTTCTCAGCCACCA - HELQ Frame_Shift_Del p.M46Nfs*8 0.35 TCGA-66-2777-01 4 95508210 95508210 G T PDLIM5 Intron 0.27 TCGA-66-2777-01 5 129521341 129521341 G T CHSY3 Missense_Mutation p.V836F 0.21 deleterious(0) probably_damaging(0.962) TCGA-66-2777-01 5 13729589 13729589 C T DNAH5 Missense_Mutation p.E3948K 0.20 possibly_damaging(0.621) TCGA-66-2777-01 5 137721893 137721893 A G KDM3B Silent p.R321R 0.28 TCGA-66-2777-01 5 140573603 140573603 C T PCDHB10 Missense_Mutation p.P493L 0.16 deleterious_low_confidence(0.02) benign(0.177) TCGA-66-2777-01 5 147029969 147029969 T G JAKMIP2 Missense_Mutation p.N257H 0.03 tolerated(1) possibly_damaging(0.735) TCGA-66-2777-01 5 153760052 153760052 G T GALNT10 Missense_Mutation p.D267Y 0.30 deleterious(0) probably_damaging(1) TCGA-66-2777-01 5 24491929 24491929 A T CDH10 Silent p.T544T 0.20 TCGA-66-2777-01 5 26915759 26915759 C T CDH9 Missense_Mutation p.V168I 0.24 tolerated(0.09) benign(0.006) TCGA-66-2777-01 5 33937484 33937484 G T RXFP3 Silent p.S213S 0.24 TCGA-66-2777-01 5 45262593 45262593 G - HCN1 Frame_Shift_Del p.A702Rfs*78 0.34 TCGA-66-2777-01 5 5146486 5146486 C T ADAMTS16 Missense_Mutation p.P140L 0.20 tolerated(0.45) benign(0.009) TCGA-66-2777-01 6 110953250 110953250 T C CDK19 Missense_Mutation p.H210R 0.11 deleterious(0) possibly_damaging(0.904) TCGA-66-2777-01 6 145948405 145948405 G A EPM2A 3'UTR 0.07 TCGA-66-2777-01 6 146276093 146276093 C A SHPRH Missense_Mutation p.Q122H 0.17 tolerated_low_confidence(0.41) benign(0.001) TCGA-66-2777-01 6 152786540 152786540 C A SYNE1 Missense_Mutation p.R595S 0.28 benign(0.269) TCGA-66-2777-01 6 160477534 160477534 C G IGF2R Missense_Mutation p.Q925E 0.15 tolerated(0.48) benign(0.158) TCGA-66-2777-01 6 162683555 162683555 A T PARK2 Splice_Site p.X138_splice 0.15 TCGA-66-2777-01 6 27925357 27925357 T C OR2B6 Silent p.L113L 0.09 TCGA-66-2777-01 6 29365344 29365344 A T OR12D2 Missense_Mutation p.T290S 0.22 tolerated(0.46) benign(0.016) TCGA-66-2777-01 6 31631742 31631742 C - GPANK1 Frame_Shift_Del p.V172Sfs*4 0.35 TCGA-66-2777-01 6 56993549 56993549 C T ZNF451 Missense_Mutation p.A112V 0.10 deleterious(0) probably_damaging(0.997) TCGA-66-2777-01 6 87725810 87725810 C A HTR1E Missense_Mutation p.T253N 0.11 tolerated(0.41) benign(0.405) TCGA-66-2777-01 7 23296641 23296641 C T GPNMB Silent p.P166P 0.34 TCGA-66-2777-01 7 34851432 34851432 C T NPSR1 Silent p.D145D 0.13 TCGA-66-2777-01 7 35242156 35242156 G T TBX20 Silent p.G410G 0.26 TCGA-66-2777-01 7 38369949 38369949 C G TRGV8 Missense_Mutation p.D117H 0.32 deleterious(0) probably_damaging(0.985) TCGA-66-2777-01 7 38389510 38389510 A T TRGV5 5'UTR 0.58 TCGA-66-2777-01 7 43485045 43485045 G A HECW1 Silent p.L758L 0.36 TCGA-66-2777-01 7 48046905 48046905 C T SUN3 Missense_Mutation p.E117K 0.27 tolerated(0.08) benign(0.399) TCGA-66-2777-01 7 50571751 50571751 C A DDC Missense_Mutation p.A241S 0.18 deleterious(0.04) benign(0.186) TCGA-66-2777-01 7 56130730 56130730 C G CCT6A Silent p.L516L 0.08 TCGA-66-2777-01 7 56130798 56130798 C A CCT6A 3'UTR 0.10 TCGA-66-2777-01 7 77325778 77325778 G C RSBN1L 5'UTR 0.23 TCGA-66-2777-01 7 91864747 91864747 C G KRIT1 Missense_Mutation p.L233F 0.06 deleterious(0.01) probably_damaging(0.94) TCGA-66-2777-01 7 92970853 92970853 G A CCDC132 Missense_Mutation p.G725R 0.30 deleterious(0) probably_damaging(0.998) TCGA-66-2777-01 7 94947701 94947701 G A PON1 Nonsense_Mutation p.R27* 0.10 TCGA-66-2777-01 8 103340026 103340026 A T UBR5 Silent p.S475S 0.08 TCGA-66-2777-01 8 106815442 106815442 G A ZFPM2 Silent p.V1044V 0.35 TCGA-66-2777-01 8 110504122 110504122 G A PKHD1L1 Missense_Mutation p.A3379T 0.47 tolerated(0.49) benign(0.101) TCGA-66-2777-01 8 119941108 119941108 G A TNFRSF11B Missense_Mutation p.T154M 0.11 tolerated(0.11) benign(0.032) TCGA-66-2777-01 8 139164580 139164580 A G FAM135B Missense_Mutation p.V713A 0.15 tolerated(0.27) benign(0.008) TCGA-66-2777-01 8 42297058 42297058 C T SLC20A2 Missense_Mutation p.D282N 0.07 tolerated(0.19) benign(0.005) TCGA-66-2777-01 8 74516011 74516011 C A STAU2 Missense_Mutation p.V327F 0.22 deleterious(0.02) benign(0.446) TCGA-66-2777-01 9 101817581 101817581 G T COL15A1 Missense_Mutation p.G1040V 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-66-2777-01 9 116812085 116812085 G T ZNF618 Nonsense_Mutation p.E742* 0.28 TCGA-66-2777-01 9 139835842 139835842 C T FBXW5 Missense_Mutation p.A440T 0.12 deleterious(0) probably_damaging(0.999) TCGA-66-2777-01 9 40773866 40773866 T A ZNF658 Missense_Mutation p.N470I 0.19 deleterious(0.03) benign(0.296) TCGA-66-2777-01 X 125299017 125299017 C A DCAF12L2 Missense_Mutation p.R297S 0.41 deleterious(0) possibly_damaging(0.493) TCGA-66-2777-01 X 125686398 125686398 G A DCAF12L1 Missense_Mutation p.P65L 0.51 tolerated(0.35) benign(0.045) TCGA-66-2777-01 X 135429127 135429127 A G GPR112 Missense_Mutation p.T1088A 0.49 deleterious(0.03) possibly_damaging(0.473) TCGA-66-2777-01 X 138878475 138878475 C G ATP11C Missense_Mutation p.G391A 0.58 tolerated(0.36) probably_damaging(0.999) TCGA-66-2777-01 X 151091925 151091925 G T MAGEA4 Intron 0.49 TCGA-66-2777-01 X 152713266 152713269 CTCG - TREX2 5'UTR 0.32 TCGA-66-2777-01 X 153592742 153592742 T G FLNA Splice_Site p.X675_splice 0.59 TCGA-66-2777-01 X 67942420 67942420 G T STARD8 Missense_Mutation p.A911S 0.38 tolerated(0.33) benign(0.074) TCGA-66-2777-01 Y 15435628 15435628 A - UTY Frame_Shift_Del p.F931Sfs*7 0.18 TCGA-66-2778-01 10 105906076 105906076 C G WDR96 Missense_Mutation p.R1267T 0.05 deleterious(0) benign(0.274) TCGA-66-2778-01 10 12142178 12142178 C G DHTKD1 Missense_Mutation p.S558C 0.11 deleterious(0.01) possibly_damaging(0.592) TCGA-66-2778-01 10 13330464 13330464 C T PHYH Missense_Mutation p.A192T 0.20 deleterious(0.05) possibly_damaging(0.627) TCGA-66-2778-01 10 13701389 13701389 G A FRMD4A Missense_Mutation p.S667F 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.603) TCGA-66-2778-01 10 28900789 28900789 C G WAC Missense_Mutation p.Q459E 0.07 deleterious(0) probably_damaging(0.983) TCGA-66-2778-01 10 5772786 5772786 C G FAM208B Missense_Mutation p.S275C 0.04 tolerated(0.08) benign(0.357) TCGA-66-2778-01 10 86017684 86017684 C A RGR Silent p.L226L 0.27 TCGA-66-2778-01 11 112065424 112065424 C T BCO2 Missense_Mutation p.H228Y 0.20 deleterious(0.01) possibly_damaging(0.862) TCGA-66-2778-01 11 129758544 129758544 A C NFRKB Missense_Mutation p.S107R 0.15 tolerated(0.21) unknown(0) TCGA-66-2778-01 11 132307140 132307140 G T OPCML Silent p.R214R 0.10 TCGA-66-2778-01 11 18062260 18062260 C G TPH1 Missense_Mutation p.R17T 0.25 tolerated(0.08) benign(0.118) TCGA-66-2778-01 11 20869208 20869208 G T NELL1 Missense_Mutation p.A139S 0.16 tolerated(0.11) benign(0.021) TCGA-66-2778-01 11 46726988 46726988 C T ZNF408 Missense_Mutation p.P580S 0.16 tolerated(0.12) benign(0.043) TCGA-66-2778-01 11 46832582 46832582 G T CKAP5 Missense_Mutation p.P202Q 0.18 tolerated(0.82) possibly_damaging(0.474) TCGA-66-2778-01 11 56431560 56431560 C A OR5AR1 Missense_Mutation p.S133R 0.14 deleterious(0.03) benign(0.002) TCGA-66-2778-01 11 57464264 57464264 G A ZDHHC5 Silent p.P347P 0.17 TCGA-66-2778-01 11 58206915 58206915 G C OR5B12 Missense_Mutation p.S237C 0.04 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-66-2778-01 11 71500881 71500881 T C FAM86C1 Missense_Mutation p.I50T 0.12 deleterious(0) probably_damaging(0.912) TCGA-66-2778-01 11 92533601 92533601 G A FAT3 Silent p.G2474G 0.24 TCGA-66-2778-01 12 18841147 18841147 G A PLCZ1 Silent p.I489I 0.16 TCGA-66-2778-01 12 475139 475139 G C KDM5A Silent p.L166L 0.17 TCGA-66-2778-01 12 475168 475168 G C KDM5A Missense_Mutation p.L157V 0.16 tolerated(1) benign(0.047) TCGA-66-2778-01 12 48723703 48723703 C A H1FNT Missense_Mutation p.A210E 0.42 deleterious(0.02) possibly_damaging(0.858) TCGA-66-2778-01 12 54396475 54396475 T A HOXC9 3'UTR 0.31 TCGA-66-2778-01 13 39266156 39266156 G A FREM2 Missense_Mutation p.E1559K 0.24 deleterious(0.02) benign(0.237) TCGA-66-2778-01 13 77657221 77657221 G A MYCBP2 Missense_Mutation p.S3623L 0.27 probably_damaging(0.961) TCGA-66-2778-01 13 79213126 79213126 A G RNF219 Silent p.I127I 0.24 TCGA-66-2778-01 14 22592224 22592224 C G TRAV26-1 Nonsense_Mutation p.Y103* 0.14 TCGA-66-2778-01 14 23419520 23419520 C T HAUS4 Intron 0.17 TCGA-66-2778-01 14 45400541 45400541 C G KLHL28 Missense_Mutation p.R516T 0.17 deleterious(0) probably_damaging(0.98) TCGA-66-2778-01 14 45645812 45645812 T C FANCM Silent p.H1285H 0.18 TCGA-66-2778-01 14 50247037 50247037 C T KLHDC2 Silent p.L294L 0.21 TCGA-66-2778-01 14 69521476 69521476 G A DCAF5 Nonsense_Mutation p.Q643* 0.07 TCGA-66-2778-01 14 88883116 88883116 C G SPATA7 Missense_Mutation p.F100L 0.05 tolerated(1) benign(0.003) TCGA-66-2778-01 14 92091277 92091277 G T CATSPERB Missense_Mutation p.A606E 0.14 deleterious(0.01) benign(0.368) TCGA-66-2778-01 14 94914713 94914713 G C SERPINA11 Silent p.L133L 0.16 TCGA-66-2778-01 15 28599963 28599963 C G RP11-483E23.2 RNA 0.15 TCGA-66-2778-01 15 34034598 34034598 G A RYR3 Missense_Mutation p.V2618I 0.14 benign(0.055) TCGA-66-2778-01 15 34551037 34551037 C T SLC12A6 Missense_Mutation p.E174K 0.14 tolerated(0.63) benign(0.017) TCGA-66-2778-01 15 40627419 40627419 C G C15orf52 Silent p.S515S 0.18 TCGA-66-2778-01 15 45658353 45658353 C T GATM Missense_Mutation p.R290K 0.18 tolerated(0.2) benign(0.008) TCGA-66-2778-01 15 51242119 51242119 G C AP4E1 Silent p.L471L 0.03 TCGA-66-2778-01 15 72638465 72638465 C T HEXA Intron 0.36 TCGA-66-2778-01 15 83561500 83561500 G A HOMER2 Silent p.T33T 0.17 TCGA-66-2778-01 16 450284 450284 G T NME4 Missense_Mutation p.S169I 0.11 deleterious(0.01) possibly_damaging(0.751) TCGA-66-2778-01 16 53358634 53358634 G C CHD9 Missense_Mutation p.E2825Q 0.15 unknown(0) TCGA-66-2778-01 16 56878437 56878437 G A NUP93 Silent p.L792L 0.15 TCGA-66-2778-01 16 68349904 68349904 G A PRMT7 Missense_Mutation p.A8T 0.06 tolerated(0.3) benign(0.005) TCGA-66-2778-01 16 88722562 88722562 T C MVD Missense_Mutation p.Q185R 0.18 deleterious(0) possibly_damaging(0.805) TCGA-66-2778-01 17 40004407 40004407 G C KLHL10 Missense_Mutation p.D559H 0.04 deleterious(0.04) possibly_damaging(0.787) TCGA-66-2778-01 17 40087031 40087031 G A TTC25 RNA 0.22 TCGA-66-2778-01 17 40371791 40371791 T C STAT5B Missense_Mutation p.K207R 0.10 tolerated(0.27) benign(0.286) TCGA-66-2778-01 17 4836835 4836835 C T GP1BA Silent p.V312V 0.15 TCGA-66-2778-01 17 57289136 57289136 A G SMG8 Missense_Mutation p.H575R 0.12 tolerated(0.29) probably_damaging(0.985) TCGA-66-2778-01 17 75085560 75085560 G A SEC14L1 Intron 0.05 TCGA-66-2778-01 17 7579461 7579463 CAG AA TP53 Frame_Shift_Del p.P75Lfs*48 0.23 TCGA-66-2778-01 17 79099134 79099135 CA T AATK Intron 0.19 TCGA-66-2778-01 17 9680518 9680518 C A DHRS7C Missense_Mutation p.R189L 0.22 deleterious(0) probably_damaging(0.957) TCGA-66-2778-01 18 3447636 3447636 T C TGIF1 5'Flank 0.13 TCGA-66-2778-01 18 55711841 55711841 C T NEDD4L 5'UTR 0.19 TCGA-66-2778-01 18 56278980 56278980 G A ALPK2 Missense_Mutation p.T17I 0.19 deleterious(0) probably_damaging(0.999) TCGA-66-2778-01 18 6241381 6241381 C A L3MBTL4 Missense_Mutation p.K176N 0.14 deleterious(0) probably_damaging(0.995) TCGA-66-2778-01 19 10812667 10812667 C T QTRT1 Silent p.F95F 0.20 TCGA-66-2778-01 19 3028720 3028720 G A TLE2 Nonsense_Mutation p.Q36* 0.16 TCGA-66-2778-01 19 3028909 3028909 G T TLE2 5'UTR 0.17 TCGA-66-2778-01 19 3783854 3783854 G A MATK Silent p.I181I 0.19 TCGA-66-2778-01 19 40902362 40902362 C T PRX Missense_Mutation p.E633K 0.16 tolerated(0.3) possibly_damaging(0.486) TCGA-66-2778-01 19 40902675 40902675 C A PRX Missense_Mutation p.M528I 0.15 tolerated(0.97) benign(0.043) TCGA-66-2778-01 19 42818842 42818842 C T TMEM145 Silent p.S117S 0.19 TCGA-66-2778-01 19 4355107 4355107 C G MPND Silent p.L311L 0.10 TCGA-66-2778-01 19 43969729 43969729 C T LYPD3 5'UTR 0.22 TCGA-66-2778-01 19 45895149 45895149 G C PPP1R13L Missense_Mutation p.P602A 0.16 deleterious(0.04) possibly_damaging(0.539) TCGA-66-2778-01 19 47725147 47725147 G A BBC3 Silent p.P199P 0.23 TCGA-66-2778-01 19 51770708 51770708 A G SIGLECL1 Silent p.Q164Q 0.17 TCGA-66-2778-01 19 52723032 52723032 C G PPP2R1A Missense_Mutation p.P406R 0.20 deleterious(0.01) possibly_damaging(0.589) TCGA-66-2778-01 19 57999200 57999200 G A ZNF419 5'UTR 0.11 TCGA-66-2778-01 19 8175749 8175749 C G FBN3 Missense_Mutation p.R1438P 0.14 tolerated(0.08) benign(0.076) TCGA-66-2778-01 1 104112715 104112715 T G AMY2B Intron 0.11 TCGA-66-2778-01 1 10699644 10699644 G A CASZ1 Silent p.A1545A 0.19 TCGA-66-2778-01 1 111738540 111738540 C T DENND2D Missense_Mutation p.E215K 0.16 deleterious(0) probably_damaging(0.986) TCGA-66-2778-01 1 149859299 149859299 G C HIST2H2AB Silent p.L56L 0.14 TCGA-66-2778-01 1 149859370 149859370 G C HIST2H2AB Missense_Mutation p.R33G 0.15 deleterious_low_confidence(0.02) benign(0.177) TCGA-66-2778-01 1 150469036 150469036 G A TARS2 Missense_Mutation p.E285K 0.17 tolerated(1) benign(0.003) TCGA-66-2778-01 1 155171307 155171307 C T THBS3 Silent p.Q410Q 0.16 TCGA-66-2778-01 1 155290426 155290426 G C FDPS 3'UTR 0.18 TCGA-66-2778-01 1 156376974 156376974 A G C1orf61 Silent p.L107L 0.17 TCGA-66-2778-01 1 156897312 156897312 C T LRRC71 Silent p.N229N 0.26 TCGA-66-2778-01 1 157737189 157737189 A G FCRL2 Missense_Mutation p.Y332H 0.17 deleterious(0) probably_damaging(1) TCGA-66-2778-01 1 16053734 16053734 C T PLEKHM2 Silent p.S389S 0.38 TCGA-66-2778-01 1 16258342 16258342 G A SPEN Silent p.K1869K 0.08 TCGA-66-2778-01 1 169101419 169101419 C G ATP1B1 3'UTR 0.21 TCGA-66-2778-01 1 178485756 178485756 G T TEX35 Missense_Mutation p.D75Y 0.10 deleterious(0.05) benign(0.24) TCGA-66-2778-01 1 19199230 19199230 G A ALDH4A1 3'UTR 0.21 TCGA-66-2778-01 1 20412659 20412659 G A PLA2G5 Missense_Mutation p.G42S 0.15 tolerated(0.16) possibly_damaging(0.548) TCGA-66-2778-01 1 207697162 207697162 T C CR1 Missense_Mutation p.C232R 0.19 deleterious(0) possibly_damaging(0.697) TCGA-66-2778-01 1 209964183 209964183 C G IRF6 Missense_Mutation p.Q239H 0.18 tolerated(0.12) possibly_damaging(0.739) TCGA-66-2778-01 1 228468045 228468045 G A OBSCN Missense_Mutation p.R3039Q 0.38 benign(0.037) TCGA-66-2778-01 1 24112837 24112837 C T PITHD1 Missense_Mutation p.S153L 0.14 deleterious(0) probably_damaging(0.98) TCGA-66-2778-01 1 247463756 247463756 C G ZNF496 3'UTR 0.25 TCGA-66-2778-01 1 5967195 5967195 G C NPHP4 Missense_Mutation p.Q531E 0.46 tolerated(1) benign(0.005) TCGA-66-2778-01 1 89586879 89586879 G A GBP2 Missense_Mutation p.P89S 0.20 tolerated(0.13) benign(0.226) TCGA-66-2778-01 1 89587622 89587622 G A GBP2 Missense_Mutation p.P10S 0.19 deleterious(0) probably_damaging(0.999) TCGA-66-2778-01 20 1145774 1145774 G A PSMF1 3'UTR 0.18 TCGA-66-2778-01 20 36147493 36147493 G T BLCAP Missense_Mutation p.F28L 0.20 tolerated(0.2) possibly_damaging(0.721) TCGA-66-2778-01 20 55048360 55048360 G A RTFDC1 Missense_Mutation p.D25N 0.13 deleterious(0) probably_damaging(1) TCGA-66-2778-01 20 55967737 55967737 G A RBM38 Missense_Mutation p.E89K 0.23 tolerated(0.08) benign(0.039) TCGA-66-2778-01 20 60578311 60578311 G A TAF4 Silent p.A797A 0.12 TCGA-66-2778-01 22 38075647 38075647 A G LGALS1 Missense_Mutation p.K100R 0.21 tolerated(0.11) benign(0.02) TCGA-66-2778-01 2 138738926 138738926 G C HNMT Intron 0.04 TCGA-66-2778-01 2 152410492 152410492 G A NEB Silent p.I6492I 0.15 TCGA-66-2778-01 2 179476841 179476841 C G TTN Missense_Mutation p.R16766P 0.11 TCGA-66-2778-01 2 179593707 179593707 C A TTN Missense_Mutation p.S6353I 0.20 TCGA-66-2778-01 2 202060607 202060607 C T CASP10 Missense_Mutation p.S207L 0.15 tolerated(0.18) benign(0.067) TCGA-66-2778-01 2 219137354 219137354 G T PNKD Intron 0.23 TCGA-66-2778-01 2 223163256 223163256 G A PAX3 Silent p.L27L 0.19 TCGA-66-2778-01 2 24964741 24964741 G C NCOA1 Missense_Mutation p.R1131T 0.13 deleterious(0.01) benign(0.231) TCGA-66-2778-01 2 33952255 33952255 C G AC009499.1 Intron 0.26 TCGA-66-2778-01 2 3691780 3691780 A G COLEC11 3'UTR 0.16 TCGA-66-2778-01 2 71185479 71185479 C A ATP6V1B1 Nonsense_Mutation p.S97* 0.23 TCGA-66-2778-01 2 74761715 74761715 C T LOXL3 Missense_Mutation p.R589Q 0.20 tolerated(0.47) probably_damaging(0.949) TCGA-66-2778-01 2 86352933 86352933 T G PTCD3 Missense_Mutation p.F294C 0.12 deleterious(0) probably_damaging(0.997) TCGA-66-2778-01 2 86693609 86693609 G A KDM3A Silent p.Q374Q 0.17 TCGA-66-2778-01 2 9558757 9558757 T A ITGB1BP1 Nonsense_Mutation p.K24* 0.17 TCGA-66-2778-01 3 108159979 108159979 C T MYH15 Silent p.L948L 0.15 TCGA-66-2778-01 3 111603564 111603564 C T PHLDB2 Nonsense_Mutation p.Q214* 0.15 TCGA-66-2778-01 3 147109031 147109046 CGCCTGGCGGAGGCAA - ZIC4 Splice_Site p.X280_splice 0.32 TCGA-66-2778-01 3 196198983 196198983 G C RNF168 Missense_Mutation p.H475D 0.11 tolerated(0.5) benign(0.001) TCGA-66-2778-01 3 47703876 47703877 - A SMARCC1 Frame_Shift_Ins p.L702Ffs*34 0.19 TCGA-66-2778-01 4 102019574 102019574 C A PPP3CA Missense_Mutation p.V198L 0.19 deleterious(0.03) possibly_damaging(0.85) TCGA-66-2778-01 4 139966110 139966110 T C CCRN4L Silent p.L260L 0.24 TCGA-66-2778-01 4 140587121 140587121 C T MGST2 5'UTR 0.24 TCGA-66-2778-01 4 162307103 162307103 C G FSTL5 Missense_Mutation p.K780N 0.19 deleterious(0.01) probably_damaging(0.977) TCGA-66-2778-01 4 164050013 164050013 T C NAF1 3'UTR 0.25 TCGA-66-2778-01 4 177116539 177116539 G T SPATA4 Missense_Mutation p.L59I 0.10 tolerated(0.12) probably_damaging(0.999) TCGA-66-2778-01 4 759925 759925 C G PCGF3 3'UTR 0.19 TCGA-66-2778-01 5 120021831 120021831 C G PRR16 Silent p.L91L 0.21 TCGA-66-2778-01 5 138661310 138661310 A G MATR3 Missense_Mutation p.D777G 0.32 tolerated(0.11) benign(0.104) TCGA-66-2778-01 5 138704469 138704469 G T PAIP2 Silent p.V122V 0.14 TCGA-66-2778-01 5 140594887 140594887 G A PCDHB13 Missense_Mutation p.E398K 0.19 tolerated_low_confidence(0.57) benign(0.001) TCGA-66-2778-01 5 156514243 156514243 C A HAVCR2 Missense_Mutation p.R259L 0.15 deleterious(0.01) possibly_damaging(0.883) TCGA-66-2778-01 5 167984460 167984460 C G PANK3 3'UTR 0.24 TCGA-66-2778-01 5 21802373 21802373 G C CDH12 Missense_Mutation p.P387A 0.42 tolerated(0.24) benign(0.007) TCGA-66-2778-01 5 22078833 22078833 C G CDH12 5'UTR 0.14 TCGA-66-2778-01 5 32143959 32143959 T C GOLPH3 Missense_Mutation p.I85V 0.35 tolerated(0.08) benign(0.095) TCGA-66-2778-01 5 7709351 7709351 T C ADCY2 Missense_Mutation p.F477L 0.14 tolerated(0.65) benign(0) TCGA-66-2778-01 5 7709429 7709429 G A ADCY2 Missense_Mutation p.A503T 0.11 tolerated(0.07) possibly_damaging(0.907) TCGA-66-2778-01 6 109322510 109322510 C A SESN1 Missense_Mutation p.R176L 0.13 deleterious(0) possibly_damaging(0.868) TCGA-66-2778-01 6 15627683 15627683 C T DTNBP1 Missense_Mutation p.M82I 0.13 tolerated(0.1) benign(0.03) TCGA-66-2778-01 6 165808737 165808737 C A PDE10A Missense_Mutation p.G480C 0.11 tolerated(0.2) possibly_damaging(0.544) TCGA-66-2778-01 6 26252107 26252107 G A HIST1H2BH Missense_Mutation p.E77K 0.04 deleterious_low_confidence(0.04) possibly_damaging(0.849) TCGA-66-2778-01 6 27114419 27114419 G A HIST1H2BK Silent p.T53T 0.14 TCGA-66-2778-01 6 27420015 27420015 A T ZNF184 Silent p.T441T 0.16 TCGA-66-2778-01 6 30671677 30671677 C T MDC1 Silent p.V1761V 0.05 TCGA-66-2778-01 6 32410335 32410335 G A HLA-DRA Missense_Mutation p.E65K 0.17 deleterious(0.01) possibly_damaging(0.661) TCGA-66-2778-01 6 32808669 32808669 C T PSMB8 3'UTR 0.15 TCGA-66-2778-01 6 39271753 39271753 C A KCNK17 Missense_Mutation p.G223V 0.12 deleterious(0) probably_damaging(1) TCGA-66-2778-01 6 70942343 70942343 G C COL9A1 Missense_Mutation p.R816G 0.14 probably_damaging(0.981) TCGA-66-2778-01 7 107599767 107599767 C A LAMB1 Missense_Mutation p.A873S 0.15 tolerated(0.37) benign(0.205) TCGA-66-2778-01 7 107615434 107615434 G A LAMB1 Silent p.C493C 0.19 TCGA-66-2778-01 7 120590857 120590857 G A ING3 5'UTR 0.14 TCGA-66-2778-01 7 128694927 128694927 C A TNPO3 5'UTR 0.14 TCGA-66-2778-01 7 131853158 131853158 C G PLXNA4 Missense_Mutation p.K1397N 0.22 deleterious(0) possibly_damaging(0.848) TCGA-66-2778-01 7 140154376 140154376 C T MKRN1 Missense_Mutation p.E464K 0.16 deleterious(0) probably_damaging(0.998) TCGA-66-2778-01 7 151960110 151960110 C G KMT2C Missense_Mutation p.W430C 0.18 probably_damaging(0.954) TCGA-66-2778-01 7 2402315 2402315 C A EIF3B Missense_Mutation p.A243D 0.05 deleterious(0) probably_damaging(0.999) TCGA-66-2778-01 7 2701348 2701348 G A TTYH3 Missense_Mutation p.R516H 0.17 tolerated(0.25) benign(0.323) TCGA-66-2778-01 7 43992420 43992420 C T UBE2D4 3'UTR 0.20 TCGA-66-2778-01 7 48528873 48528873 A T ABCA13 Missense_Mutation p.Y4408F 0.17 probably_damaging(0.993) TCGA-66-2778-01 7 57510019 57510019 G A ZNF716 Missense_Mutation p.G9R 0.12 tolerated_low_confidence(0.1) probably_damaging(1) TCGA-66-2778-01 7 92731019 92731019 G C SAMD9 Missense_Mutation p.F1464L 0.14 deleterious(0) probably_damaging(0.936) TCGA-66-2778-01 8 101287334 101287334 C G RNF19A Missense_Mutation p.E244Q 0.14 tolerated(0.11) benign(0.124) TCGA-66-2778-01 8 113697923 113697923 C G CSMD3 Missense_Mutation p.V732L 0.31 tolerated(0.19) probably_damaging(0.999) TCGA-66-2778-01 8 2796131 2796131 C T CSMD1 Silent p.L3557L 0.11 TCGA-66-2778-01 8 2830790 2830790 C G CSMD1 Silent p.G2924G 0.14 TCGA-66-2778-01 8 37686463 37686463 G A GPR124 Silent p.G132G 0.08 TCGA-66-2778-01 8 38005810 38005810 C T STAR Missense_Mutation p.E72K 0.24 deleterious(0.01) benign(0.111) TCGA-66-2778-01 8 6690416 6690416 T A GS1-24F4.2 5'Flank 0.43 TCGA-66-2778-01 8 77765105 77765105 G A ZFHX4 Missense_Mutation p.R1983H 0.34 possibly_damaging(0.715) TCGA-66-2778-01 9 1055884 1055884 C G DMRT2 Intron 0.21 TCGA-66-2778-01 9 114089856 114089856 G A OR2K2 Silent p.P286P 0.19 TCGA-66-2778-01 9 33246680 33246680 G C SPINK4 Missense_Mutation p.D57H 0.11 deleterious(0) probably_damaging(0.987) TCGA-66-2778-01 9 37746211 37746211 G A FRMPD1 Silent p.S1394S 0.07 TCGA-66-2778-01 9 8485848 8485848 T A PTPRD Missense_Mutation p.Y990F 0.13 deleterious(0) probably_damaging(0.987) TCGA-66-2778-01 X 152159319 152159319 T A PNMA5 Missense_Mutation p.H275L 0.36 deleterious(0.01) benign(0) TCGA-66-2778-01 X 153072220 153072220 C A PDZD4 Missense_Mutation p.D155Y 0.38 deleterious(0) probably_damaging(0.998) TCGA-66-2778-01 X 1546948 1546948 G C ASMTL Missense_Mutation p.D192E 0.18 deleterious(0) probably_damaging(0.998) TCGA-66-2778-01 X 27765787 27765787 C T DCAF8L2 Missense_Mutation p.R259W 0.19 deleterious(0.01) probably_damaging(0.921) TCGA-66-2778-01 X 37026697 37026697 C T FAM47C Missense_Mutation p.R72C 0.17 tolerated(0.22) benign(0.082) TCGA-66-2778-01 X 73960686 73960686 T C KIAA2022 Missense_Mutation p.K1236E 0.18 tolerated(0.07) probably_damaging(0.999) TCGA-66-2780-01 10 121571349 121571349 G A INPP5F Missense_Mutation p.E590K 0.22 deleterious(0.03) possibly_damaging(0.825) TCGA-66-2780-01 10 123247514 123247514 C G FGFR2 Missense_Mutation p.K660N 0.19 deleterious(0) benign(0.369) TCGA-66-2780-01 10 134219581 134219581 C T PWWP2B Missense_Mutation p.A526V 0.06 deleterious(0) probably_damaging(1) TCGA-66-2780-01 10 16882993 16882993 G C CUBN Silent p.S3239S 0.22 TCGA-66-2780-01 10 25464669 25464669 G A GPR158 Missense_Mutation p.G107D 0.13 tolerated(0.24) benign(0.066) TCGA-66-2780-01 10 43600539 43600539 G T RET Missense_Mutation p.M255I 0.18 tolerated(0.49) benign(0.001) TCGA-66-2780-01 10 48389921 48389921 G T RBP3 Silent p.I319I 0.14 TCGA-66-2780-01 10 85991773 85991773 C A LRIT1 Missense_Mutation p.E594D 0.17 deleterious(0.03) probably_damaging(0.917) TCGA-66-2780-01 11 123601319 123601319 T A ZNF202 Missense_Mutation p.Q93L 0.19 deleterious(0) probably_damaging(0.997) TCGA-66-2780-01 11 124767626 124767626 G A ROBO4 Silent p.I22I 0.25 TCGA-66-2780-01 11 124793632 124793632 G T HEPACAM Silent p.T234T 0.12 TCGA-66-2780-01 11 27721058 27721058 G T BDNF Intron 0.25 TCGA-66-2780-01 11 27721059 27721059 G A BDNF Intron 0.26 TCGA-66-2780-01 11 36595189 36595189 G T RAG1 Missense_Mutation p.R112L 0.18 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-66-2780-01 11 55322705 55322705 T C OR4C15 Missense_Mutation p.I308T 0.20 deleterious_low_confidence(0.03) probably_damaging(0.997) TCGA-66-2780-01 11 55658883 55658883 T C TRIM51 Silent p.F378F 0.17 TCGA-66-2780-01 11 55999725 55999725 C A OR5T2 Missense_Mutation p.V313L 0.15 deleterious(0.03) benign(0.232) TCGA-66-2780-01 11 56258303 56258303 G A OR5M8 Missense_Mutation p.P182S 0.27 deleterious(0.01) probably_damaging(0.982) TCGA-66-2780-01 11 59224673 59224673 G T OR4D6 Missense_Mutation p.K80N 0.21 deleterious(0.02) probably_damaging(0.997) TCGA-66-2780-01 11 64390513 64390513 G C NRXN2 Missense_Mutation p.I1295M 0.29 deleterious(0) probably_damaging(0.98) TCGA-66-2780-01 11 70266527 70266527 G A CTTN Missense_Mutation p.G234E 0.18 deleterious(0.01) probably_damaging(1) TCGA-66-2780-01 11 71277048 71277048 T G KRTAP5-10 Missense_Mutation p.C139G 0.18 unknown(0) TCGA-66-2780-01 11 77034232 77034232 A T PAK1 3'UTR 0.29 TCGA-66-2780-01 11 92087169 92087169 G C FAT3 Missense_Mutation p.G631R 0.18 probably_damaging(1) TCGA-66-2780-01 12 116457205 116457205 A C MED13L Missense_Mutation p.M278R 0.16 deleterious(0) unknown(0) TCGA-66-2780-01 12 14576847 14576847 A G ATF7IP 5'UTR 0.15 TCGA-66-2780-01 12 20799885 20799885 G T PDE3A Splice_Site p.X855_splice 0.22 TCGA-66-2780-01 12 20799886 20799886 T A PDE3A Splice_Site p.X855_splice 0.21 TCGA-66-2780-01 12 4383320 4383320 T C CCND2 Silent p.L38L 0.17 TCGA-66-2780-01 12 4383326 4383326 G T CCND2 Missense_Mutation p.Q40H 0.16 tolerated(0.11) benign(0.078) TCGA-66-2780-01 12 49421838 49421838 G A KMT2D Silent p.P4823P 0.15 TCGA-66-2780-01 12 49445909 49445909 G A KMT2D Silent p.P519P 0.21 TCGA-66-2780-01 12 54366930 54366930 T A HOXC11 5'UTR 0.39 TCGA-66-2780-01 12 57974791 57974791 G T KIF5A Missense_Mutation p.R864L 0.22 deleterious(0.04) probably_damaging(0.997) TCGA-66-2780-01 12 70740017 70740017 A G CNOT2 Silent p.P483P 0.15 TCGA-66-2780-01 12 7479581 7479581 G A ACSM4 Missense_Mutation p.A516T 0.10 deleterious(0) probably_damaging(0.982) TCGA-66-2780-01 12 7803649 7803649 C T APOBEC1 Silent p.L177L 0.24 TCGA-66-2780-01 13 28601260 28601260 A T FLT3 Missense_Mutation p.S724R 0.24 deleterious(0) probably_damaging(0.996) TCGA-66-2780-01 13 28877228 28877228 A T FLT1 3'UTR 0.25 TCGA-66-2780-01 13 36521571 36521571 A - DCLK1 Frame_Shift_Del p.F249Lfs*23 0.22 TCGA-66-2780-01 14 105860993 105860993 C G PACS2 Missense_Mutation p.S900C 0.14 deleterious(0) probably_damaging(0.919) TCGA-66-2780-01 14 106453064 106453064 T A IGHV1-2 Missense_Mutation p.T15S 0.25 tolerated(0.09) possibly_damaging(0.585) TCGA-66-2780-01 14 22932179 22932179 T C TRDC Missense_Mutation p.F86S 0.18 tolerated(0.15) possibly_damaging(0.837) TCGA-66-2780-01 14 23894936 23894936 C G MYH7 Missense_Mutation p.D752H 0.15 deleterious(0) probably_damaging(1) TCGA-66-2780-01 14 24470139 24470139 G A DHRS4L2 Missense_Mutation p.R159Q 0.11 deleterious(0.03) benign(0.071) TCGA-66-2780-01 14 75070376 75070376 C G LTBP2 Missense_Mutation p.G176A 0.27 deleterious(0) probably_damaging(0.999) TCGA-66-2780-01 14 96707852 96707852 G T BDKRB2 3'UTR 0.18 TCGA-66-2780-01 15 25220572 25220572 G T SNRPN Missense_Mutation p.G24V 0.15 deleterious(0) probably_damaging(0.916) TCGA-66-2780-01 15 31294542 31294542 C A TRPM1 Missense_Mutation p.C1471F 0.18 tolerated_low_confidence(0.15) benign(0.001) TCGA-66-2780-01 15 34356323 34356323 G C CHRM5 Missense_Mutation p.D469H 0.17 tolerated(0.09) possibly_damaging(0.8) TCGA-66-2780-01 15 35746978 35746978 G C DPH6 Missense_Mutation p.S119C 0.14 deleterious(0.01) possibly_damaging(0.907) TCGA-66-2780-01 15 43662013 43662013 C G ZSCAN29 Silent p.R33R 0.13 TCGA-66-2780-01 15 43762214 43762214 G A TP53BP1 Nonsense_Mutation p.Q411* 0.21 TCGA-66-2780-01 15 53992045 53992045 T G WDR72 Missense_Mutation p.H556P 0.22 deleterious(0) probably_damaging(1) TCGA-66-2780-01 15 65623451 65623451 C T IGDCC3 Missense_Mutation p.A500T 0.17 deleterious(0) probably_damaging(0.989) TCGA-66-2780-01 15 70351755 70351755 G A TLE3 Silent p.S253S 0.17 TCGA-66-2780-01 15 73843356 73843356 T C C15orf60 Silent p.V137V 0.12 TCGA-66-2780-01 15 77425619 77425619 G A PEAK1 Nonsense_Mutation p.Q1269* 0.27 TCGA-66-2780-01 16 1545551 1545551 C A TELO2 Missense_Mutation p.F180L 0.08 tolerated(1) benign(0) TCGA-66-2780-01 16 1561094 1561094 A G IFT140 Missense_Mutation p.Y1414H 0.24 deleterious(0) probably_damaging(0.992) TCGA-66-2780-01 16 2135247 2135247 G T TSC2 Missense_Mutation p.R1529L 0.15 deleterious(0) benign(0.414) TCGA-66-2780-01 16 29883585 29883585 A G SEZ6L2 Missense_Mutation p.F876L 0.19 tolerated(1) benign(0) TCGA-66-2780-01 16 49672053 49672053 C A ZNF423 Missense_Mutation p.G337V 0.14 deleterious(0.05) benign(0.075) TCGA-66-2780-01 16 72122950 72122950 C G TXNL4B Missense_Mutation p.D74H 0.18 deleterious(0) probably_damaging(1) TCGA-66-2780-01 16 77775789 77775789 T C NUDT7 Missense_Mutation p.L220S 0.21 deleterious(0.01) benign(0.147) TCGA-66-2780-01 16 85111096 85111096 A T KIAA0513 Nonsense_Mutation p.K214* 0.14 TCGA-66-2780-01 17 38073396 38073396 C T GSDMB Silent p.L58L 0.18 TCGA-66-2780-01 17 39034494 39034494 G A KRT20 Missense_Mutation p.R348C 0.26 tolerated(0.13) benign(0.126) TCGA-66-2780-01 17 77073513 77073513 A T ENGASE Missense_Mutation p.I50F 0.09 deleterious(0.02) benign(0.078) TCGA-66-2780-01 17 77705076 77705076 C T ENPP7 Nonsense_Mutation p.R59* 0.25 TCGA-66-2780-01 18 28923621 28923621 G A DSG1 Intron 0.14 TCGA-66-2780-01 18 48581243 48581243 C T SMAD4 Nonsense_Mutation p.Q183* 0.23 TCGA-66-2780-01 18 66344308 66344308 T G TMX3 Silent p.R409R 0.19 TCGA-66-2780-01 19 15918457 15918457 G T OR10H1 Missense_Mutation p.R131S 0.27 deleterious(0.02) benign(0.005) TCGA-66-2780-01 19 3941099 3941099 C A NMRK2 Silent p.P142P 0.23 TCGA-66-2780-01 19 42839328 42839328 G T MEGF8 Missense_Mutation p.A234S 0.33 deleterious(0.02) possibly_damaging(0.524) TCGA-66-2780-01 19 43523115 43523115 C G PSG11 Missense_Mutation p.E172D 0.18 tolerated(0.28) benign(0.057) TCGA-66-2780-01 19 51453310 51453310 T A KLK5 Missense_Mutation p.S46C 0.26 deleterious(0.01) benign(0.206) TCGA-66-2780-01 19 51958757 51958757 A T SIGLEC8 Missense_Mutation p.D322E 0.28 tolerated(0.27) benign(0.199) TCGA-66-2780-01 19 53770451 53770451 T A VN1R4 Silent p.T156T 0.18 TCGA-66-2780-01 19 55592768 55592768 C G EPS8L1 Missense_Mutation p.P228A 0.42 tolerated(0.54) benign(0.001) TCGA-66-2780-01 19 58301708 58301708 G C ZNF586 Missense_Mutation p.A35P 0.14 deleterious(0.03) possibly_damaging(0.628) TCGA-66-2780-01 19 9085145 9085145 C G MUC16 Missense_Mutation p.A2224P 0.29 unknown(0) TCGA-66-2780-01 1 118550722 118550722 C A SPAG17 Missense_Mutation p.C1511F 0.15 deleterious(0) probably_damaging(0.967) TCGA-66-2780-01 1 151378546 151378546 T A POGZ Missense_Mutation p.T989S 0.13 deleterious(0.03) probably_damaging(0.986) TCGA-66-2780-01 1 153610803 153610803 C T CHTOP Missense_Mutation p.T33M 0.10 tolerated(0.38) benign(0) TCGA-66-2780-01 1 15769956 15769956 G C CTRC Silent p.L133L 0.09 TCGA-66-2780-01 1 158259855 158259855 A C CD1C Translation_Start_Site p.M1? 0.21 deleterious(0) unknown(0) TCGA-66-2780-01 1 158590102 158590102 A T SPTA1 Missense_Mutation p.L2092Q 0.19 deleterious(0) probably_damaging(0.977) TCGA-66-2780-01 1 161275640 161275640 C T MPZ 3'UTR 0.20 TCGA-66-2780-01 1 175087879 175087879 C - TNN Frame_Shift_Del p.P857Rfs*35 0.22 TCGA-66-2780-01 1 197030071 197030071 C G F13B Missense_Mutation p.E196Q 0.16 tolerated(0.59) benign(0.113) TCGA-66-2780-01 1 22922656 22922656 G A EPHA8 Silent p.Q585Q 0.21 TCGA-66-2780-01 1 238053451 238053451 C A ZP4 Silent p.L67L 0.08 TCGA-66-2780-01 1 243507555 243507555 C A SDCCAG8 Missense_Mutation p.N465K 0.22 tolerated(1) benign(0.001) TCGA-66-2780-01 1 248343396 248343396 G A OR2M2 Missense_Mutation p.V37M 0.23 tolerated(0.21) benign(0.115) TCGA-66-2780-01 1 34076646 34076646 T C CSMD2 Missense_Mutation p.Y2073C 0.14 deleterious(0) probably_damaging(0.999) TCGA-66-2780-01 1 3669114 3669114 C A CCDC27 Silent p.G23G 0.40 TCGA-66-2780-01 1 56989495 56989495 C G PPAP2B Silent p.V211V 0.22 TCGA-66-2780-01 1 76878011 76878011 G T ST6GALNAC3 Missense_Mutation p.G178C 0.20 possibly_damaging(0.907) TCGA-66-2780-01 1 78177450 78177450 T C USP33 Silent p.E827E 0.17 TCGA-66-2780-01 20 31814274 31814274 T A BPIFA3 Missense_Mutation p.L200H 0.28 deleterious(0) possibly_damaging(0.905) TCGA-66-2780-01 20 37531333 37531333 C T PPP1R16B Silent p.N198N 0.43 TCGA-66-2780-01 20 51870996 51870996 C T TSHZ2 Silent p.P333P 0.50 TCGA-66-2780-01 20 56190007 56190007 C A ZBP1 Missense_Mutation p.R146S 0.29 tolerated(0.64) possibly_damaging(0.507) TCGA-66-2780-01 22 21337317 21337317 C G LZTR1 Missense_Mutation p.R68G 0.19 deleterious(0) probably_damaging(1) TCGA-66-2780-01 22 26695130 26695130 G A SEZ6L Missense_Mutation p.C448Y 0.25 deleterious(0) probably_damaging(1) TCGA-66-2780-01 22 29924107 29924107 C A THOC5 Missense_Mutation p.K342N 0.26 deleterious(0.01) benign(0.241) TCGA-66-2780-01 22 38369863 38369863 G A SOX10 Missense_Mutation p.P347L 0.15 tolerated(0.11) benign(0.037) TCGA-66-2780-01 2 102440439 102440439 C G MAP4K4 Missense_Mutation p.S77C 0.08 deleterious_low_confidence(0) unknown(0) TCGA-66-2780-01 2 139308568 139308568 G C SPOPL Missense_Mutation p.R99P 0.18 tolerated(0.21) probably_damaging(0.995) TCGA-66-2780-01 2 179409130 179409130 T A TTN Silent p.V31942V 0.15 TCGA-66-2780-01 2 193049091 193049091 G T TMEFF2 Nonsense_Mutation p.S134* 0.23 TCGA-66-2780-01 2 203141216 203141216 G A NOP58 Intron 0.10 TCGA-66-2780-01 2 207509208 207509208 A T AC010731.4 RNA 0.20 TCGA-66-2780-01 2 207558005 207558005 T C DYTN Missense_Mutation p.R292G 0.12 deleterious(0) possibly_damaging(0.743) TCGA-66-2780-01 2 219679704 219679704 T A CYP27A1 Missense_Mutation p.L516Q 0.20 deleterious(0) probably_damaging(0.998) TCGA-66-2780-01 2 24299163 24299163 G T SF3B14 5'UTR 0.23 TCGA-66-2780-01 2 48898734 48898734 C T STON1-GTF2A1L Missense_Mutation p.P1119L 0.19 deleterious(0) probably_damaging(0.989) TCGA-66-2780-01 2 63834097 63834097 T A MDH1 Silent p.A345A 0.23 TCGA-66-2780-01 2 71607682 71607682 T G ZNF638 Silent p.T788T 0.16 TCGA-66-2780-01 2 89417279 89417279 C T IGKV1-17 Silent p.L10L 0.14 TCGA-66-2780-01 3 127358234 127358234 G T PODXL2 Missense_Mutation p.G73W 0.10 deleterious(0.02) probably_damaging(0.997) TCGA-66-2780-01 3 128696888 128696888 C G KIAA1257 Missense_Mutation p.G270R 0.11 deleterious(0.03) possibly_damaging(0.839) TCGA-66-2780-01 3 170784432 170784432 A G TNIK Silent p.Y1264Y 0.27 TCGA-66-2780-01 3 185146681 185146681 G T MAP3K13 Silent p.T104T 0.14 TCGA-66-2780-01 3 197579450 197579450 C G LRCH3 Missense_Mutation p.P517A 0.08 deleterious(0.05) possibly_damaging(0.492) TCGA-66-2780-01 3 73432382 73432382 G C PDZRN3 3'UTR 0.16 TCGA-66-2780-01 3 7620360 7620361 - T GRM7 Frame_Shift_Ins p.W590Lfs*28 0.31 TCGA-66-2780-01 4 17616310 17616310 G T MED28 Silent p.G11G 0.19 TCGA-66-2780-01 4 183601476 183601476 G A TENM3 Missense_Mutation p.G538E 0.23 deleterious(0) probably_damaging(0.972) TCGA-66-2780-01 4 81966889 81966889 T A BMP3 Intron 0.21 TCGA-66-2780-01 4 89950644 89950644 C T FAM13A Missense_Mutation p.V62M 0.23 deleterious(0) probably_damaging(0.991) TCGA-66-2780-01 5 134015299 134015299 C T SEC24A Missense_Mutation p.P421L 0.23 deleterious(0.01) benign(0.377) TCGA-66-2780-01 5 140564054 140564054 G A PCDHB16 Silent p.L640L 0.37 TCGA-66-2780-01 5 140594628 140594628 A G PCDHB13 Silent p.E311E 0.13 TCGA-66-2780-01 5 140625809 140625809 C G PCDHB15 Silent p.P221P 0.25 TCGA-66-2780-01 5 140720501 140720501 T C PCDHGA2 Missense_Mutation p.S655P 0.39 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-66-2780-01 5 140750023 140750023 T C PCDHGB3 Missense_Mutation p.L21P 0.22 deleterious(0) probably_damaging(0.959) TCGA-66-2780-01 5 156932793 156932793 G T ADAM19 Silent p.G338G 0.32 TCGA-66-2780-01 5 16671001 16671001 C A MYO10 Missense_Mutation p.Q1839H 0.25 tolerated(0.98) possibly_damaging(0.807) TCGA-66-2780-01 5 167944983 167944983 C G RARS Missense_Mutation p.L597V 0.20 deleterious(0.04) probably_damaging(0.941) TCGA-66-2780-01 5 170351426 170351426 C T RANBP17 Missense_Mutation p.T447M 0.28 tolerated(0.08) possibly_damaging(0.84) TCGA-66-2780-01 5 24593513 24593513 C - CDH10 Frame_Shift_Del p.P30Lfs*8 0.20 TCGA-66-2780-01 5 32243668 32243668 C G MTMR12 Missense_Mutation p.W353C 0.24 deleterious(0.03) probably_damaging(0.971) TCGA-66-2780-01 5 86685301 86685301 C G RASA1 Nonsense_Mutation p.S1006* 0.25 TCGA-66-2780-01 6 117862184 117862184 C T DCBLD1 Silent p.S451S 0.22 TCGA-66-2780-01 6 27419665 27419665 T C ZNF184 Missense_Mutation p.Y558C 0.14 deleterious(0) probably_damaging(0.998) TCGA-66-2780-01 6 29795544 29795544 A G HLA-G 5'UTR 0.12 TCGA-66-2780-01 6 31609651 31609651 C A BAG6 Missense_Mutation p.G773W 0.25 deleterious(0) probably_damaging(0.998) TCGA-66-2780-01 6 35393715 35393715 C G PPARD Silent p.L395L 0.20 TCGA-66-2780-01 6 43250735 43250735 G T TTBK1 Nonsense_Mutation p.E753* 0.32 TCGA-66-2780-01 6 44279932 44279932 G C AARS2 Missense_Mutation p.N104K 0.10 deleterious(0) probably_damaging(1) TCGA-66-2780-01 6 49583445 49583445 C A RHAG Missense_Mutation p.G178W 0.13 deleterious(0) probably_damaging(1) TCGA-66-2780-01 6 51586818 51586818 A C PKHD1 Intron 0.15 TCGA-66-2780-01 6 56507657 56507657 G A DST 5'UTR 0.23 TCGA-66-2780-01 6 7568053 7568053 G T DSP Missense_Mutation p.G394W 0.24 possibly_damaging(0.817) TCGA-66-2780-01 6 76713617 76713617 G A IMPG1 Missense_Mutation p.P396S 0.19 tolerated(0.07) possibly_damaging(0.46) TCGA-66-2780-01 6 83075249 83075249 C T TPBG Nonsense_Mutation p.Q191* 0.09 TCGA-66-2780-01 7 142919990 142919990 T - TAS2R40 Frame_Shift_Del p.Y274Tfs*23 0.31 TCGA-66-2780-01 7 14620493 14620493 C G DGKB Missense_Mutation p.G536R 0.11 deleterious(0) probably_damaging(1) TCGA-66-2780-01 7 150554527 150554527 C G AOC1 Missense_Mutation p.S323R 0.52 deleterious(0.04) benign(0.376) TCGA-66-2780-01 7 23401168 23401168 T - IGF2BP3 Frame_Shift_Del p.K129Rfs*8 0.19 TCGA-66-2780-01 7 25266624 25266624 C T NPVF Missense_Mutation p.E54K 0.18 deleterious(0.02) benign(0.103) TCGA-66-2780-01 7 33427616 33427616 G T BBS9 Missense_Mutation p.G659C 0.17 deleterious(0.01) possibly_damaging(0.646) TCGA-66-2780-01 7 37947080 37947080 C A SFRP4 3'UTR 0.17 TCGA-66-2780-01 7 43484125 43484125 G T HECW1 Missense_Mutation p.A452S 0.15 tolerated_low_confidence(0.71) benign(0.001) TCGA-66-2780-01 7 64452868 64452868 C G ERV3-1 Silent p.G179G 0.16 TCGA-66-2780-01 7 82581271 82581271 C A PCLO Missense_Mutation p.A3000S 0.14 unknown(0) TCGA-66-2780-01 8 113256749 113256749 C G CSMD3 Missense_Mutation p.D3426H 0.18 deleterious(0) probably_damaging(0.992) TCGA-66-2780-01 8 11607664 11607664 C A GATA4 Silent p.T276T 0.26 TCGA-66-2780-01 8 132980672 132980672 C G EFR3A Missense_Mutation p.S329C 0.22 deleterious(0) probably_damaging(0.979) TCGA-66-2780-01 8 135812802 135812802 C G MIR30B RNA 0.08 TCGA-66-2780-01 8 67970337 67970337 T C COPS5 Missense_Mutation p.E163G 0.15 tolerated(0.07) probably_damaging(0.996) TCGA-66-2780-01 8 74209534 74209534 T A RDH10 Missense_Mutation p.V132D 0.18 deleterious(0) probably_damaging(0.999) TCGA-66-2780-01 8 9634202 9634202 G A TNKS Missense_Mutation p.E1314K 0.12 deleterious_low_confidence(0.01) benign(0.046) TCGA-66-2780-01 9 100459559 100459559 C T XPA Missense_Mutation p.G6R 0.33 tolerated_low_confidence(0.53) unknown(0) TCGA-66-2780-01 9 104433333 104433333 G A GRIN3A Missense_Mutation p.S454F 0.26 tolerated(0.12) benign(0.211) TCGA-66-2780-01 9 104433334 104433334 A T GRIN3A Missense_Mutation p.S454T 0.26 tolerated(0.45) benign(0.2) TCGA-66-2780-01 9 113170734 113170734 G A SVEP1 Silent p.T2382T 0.26 TCGA-66-2780-01 9 136529034 136529034 T C SARDH Missense_Mutation p.K912E 0.32 tolerated(0.06) benign(0.14) TCGA-66-2780-01 9 968155 968155 G A DMRT1 3'UTR 0.28 TCGA-66-2780-01 X 119562321 119562321 A C LAMP2 3'UTR 0.37 TCGA-66-2780-01 X 21675151 21675151 G A KLHL34 Silent p.I252I 0.44 TCGA-66-2780-01 X 37312768 37312768 G C PRRG1 Missense_Mutation p.S184T 0.27 tolerated(0.29) benign(0.033) TCGA-66-2781-01 10 104436497 104436497 G T ARL3 3'UTR 0.17 TCGA-66-2781-01 10 123970465 123970465 G A TACC2 Silent p.T2175T 0.25 TCGA-66-2781-01 10 126694154 126694154 C A CTBP2 Intron 0.07 TCGA-66-2781-01 10 24833113 24833113 G A KIAA1217 Silent p.V1638V 0.19 TCGA-66-2781-01 10 69935090 69935090 G A MYPN Missense_Mutation p.G859R 0.17 deleterious(0) possibly_damaging(0.8) TCGA-66-2781-01 10 71005859 71005859 G T HKDC1 Silent p.L300L 0.35 TCGA-66-2781-01 10 95660692 95660692 A G SLC35G1 Silent p.K181K 0.28 TCGA-66-2781-01 11 107403025 107403025 C A ALKBH8 Splice_Site p.X293_splice 0.35 TCGA-66-2781-01 11 113563832 113563832 C G TMPRSS5 Missense_Mutation p.V309L 0.20 tolerated(0.16) benign(0.047) TCGA-66-2781-01 11 11374203 11374203 C G CSNK2A3 Missense_Mutation p.R155T 0.34 deleterious(0) probably_damaging(0.989) TCGA-66-2781-01 11 124745138 124745138 T A ROBO3 Silent p.P735P 0.22 TCGA-66-2781-01 11 16071258 16071258 C - SOX6 Intron 0.31 TCGA-66-2781-01 11 55890082 55890082 C T OR8H3 Silent p.V78V 0.12 TCGA-66-2781-01 11 57088079 57088079 G T TNKS1BP1 Missense_Mutation p.P68T 0.20 tolerated(0.15) probably_damaging(1) TCGA-66-2781-01 11 57088089 57088089 C A TNKS1BP1 Silent p.G64G 0.19 TCGA-66-2781-01 11 59997460 59997460 G T MS4A4E Missense_Mutation p.N23K 0.32 tolerated_low_confidence(0.25) possibly_damaging(0.607) TCGA-66-2781-01 11 68181283 68181283 G A LRP5 Missense_Mutation p.R877Q 0.04 tolerated(0.91) benign(0.009) TCGA-66-2781-01 11 7063963 7063963 G C NLRP14 Missense_Mutation p.D236H 0.34 tolerated(0.08) benign(0.305) TCGA-66-2781-01 11 72292489 72292489 G T PDE2A Missense_Mutation p.P653T 0.37 tolerated(0.1) possibly_damaging(0.817) TCGA-66-2781-01 11 89911046 89911046 C A NAALAD2 Missense_Mutation p.P540Q 0.24 deleterious(0) probably_damaging(1) TCGA-66-2781-01 11 92624033 92624033 G T FAT3 Silent p.P4508P 0.18 TCGA-66-2781-01 12 102559553 102559553 A G PARPBP Missense_Mutation p.Y238C 0.39 tolerated(0.25) probably_damaging(1) TCGA-66-2781-01 12 112672921 112672921 C T HECTD4 Missense_Mutation p.E1813K 0.48 possibly_damaging(0.884) TCGA-66-2781-01 12 11420663 11420663 G T PRB3 Missense_Mutation p.Q174K 0.29 tolerated(0.35) unknown(0) TCGA-66-2781-01 12 120606105 120606105 C G GCN1L1 Splice_Site p.X507_splice 0.39 TCGA-66-2781-01 12 20903749 20903749 G T SLCO1C1 Missense_Mutation p.A647S 0.21 tolerated(0.09) benign(0.003) TCGA-66-2781-01 12 48596562 48596562 C G OR10AD1 Missense_Mutation p.D172H 0.27 tolerated(0.06) possibly_damaging(0.879) TCGA-66-2781-01 12 88512421 88512421 T A CEP290 Missense_Mutation p.E541V 0.05 possibly_damaging(0.804) TCGA-66-2781-01 13 23915054 23915054 C G SACS Missense_Mutation p.K987N 0.24 benign(0.146) TCGA-66-2781-01 13 77760022 77760022 T A MYCBP2 Missense_Mutation p.E1438D 0.39 benign(0.006) TCGA-66-2781-01 14 106780810 106780810 C A IGHV4-28 Silent p.L18L 0.17 TCGA-66-2781-01 14 20502131 20502131 T A OR4K13 Missense_Mutation p.S263C 0.09 deleterious(0.01) possibly_damaging(0.823) TCGA-66-2781-01 14 21109376 21109376 G T OR6S1 Missense_Mutation p.L159I 0.18 tolerated(0.13) benign(0.072) TCGA-66-2781-01 14 21623456 21623456 G C OR5AU1 Silent p.T243T 0.27 TCGA-66-2781-01 14 47324244 47324244 G T MDGA2 Missense_Mutation p.P956T 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-66-2781-01 14 64882081 64882081 G A MTHFD1 Missense_Mutation p.M82I 0.12 tolerated(0.42) benign(0) TCGA-66-2781-01 14 68052672 68052672 T C PLEKHH1 Missense_Mutation p.V1264A 0.13 tolerated(0.22) benign(0.003) TCGA-66-2781-01 14 73464861 73464861 A G ZFYVE1 Missense_Mutation p.S216P 0.10 deleterious(0.01) possibly_damaging(0.704) TCGA-66-2781-01 15 101188614 101188614 C G ASB7 Missense_Mutation p.P302A 0.42 deleterious_low_confidence(0) possibly_damaging(0.868) TCGA-66-2781-01 15 34072409 34072409 C A RYR3 Intron 0.13 TCGA-66-2781-01 16 11845121 11845121 C T ZC3H7A 3'UTR 0.32 TCGA-66-2781-01 16 1505780 1505780 G C CLCN7 Missense_Mutation p.S311R 0.11 deleterious(0) probably_damaging(0.998) TCGA-66-2781-01 16 28995152 28995152 G T SPNS1 Nonsense_Mutation p.E456* 0.31 TCGA-66-2781-01 16 30616439 30616439 G A ZNF689 Missense_Mutation p.R217C 0.14 deleterious(0.02) possibly_damaging(0.908) TCGA-66-2781-01 16 46655228 46655228 G C SHCBP1 Missense_Mutation p.A15G 0.10 tolerated_low_confidence(0.13) benign(0.036) TCGA-66-2781-01 16 67696952 67696952 C G ENKD1 3'UTR 0.38 TCGA-66-2781-01 16 89261398 89261398 C G CDH15 Missense_Mutation p.D760E 0.28 tolerated(0.11) possibly_damaging(0.866) TCGA-66-2781-01 17 10216611 10216611 C T MYH13 Missense_Mutation p.E1349K 0.41 deleterious(0.01) probably_damaging(0.995) TCGA-66-2781-01 17 40837084 40837084 C A CNTNAP1 Missense_Mutation p.R147S 0.26 deleterious(0) probably_damaging(0.972) TCGA-66-2781-01 17 49731086 49731086 G T CA10 Silent p.I159I 0.19 TCGA-66-2781-01 17 65105343 65105343 C T HELZ Missense_Mutation p.E1460K 0.34 deleterious_low_confidence(0.04) unknown(0) TCGA-66-2781-01 17 71282411 71282411 T C CDC42EP4 Missense_Mutation p.S77G 0.20 tolerated(1) benign(0.019) TCGA-66-2781-01 17 71282412 71282412 G C CDC42EP4 Silent p.R76R 0.20 TCGA-66-2781-01 17 7577593 7577594 TA - TP53 Frame_Shift_Del p.T230Hfs*9 0.15 TCGA-66-2781-01 17 80417879 80417879 G T NARF Missense_Mutation p.K13N 0.13 deleterious(0.01) possibly_damaging(0.77) TCGA-66-2781-01 18 44561086 44561086 G T TCEB3B Missense_Mutation p.P184T 0.35 tolerated(0.22) benign(0.039) TCGA-66-2781-01 18 51888448 51888448 G T C18orf54 Intron 0.25 TCGA-66-2781-01 18 67759909 67759909 C T RTTN Intron 0.17 TCGA-66-2781-01 18 76755137 76755137 C A SALL3 Missense_Mutation p.T1049N 0.15 deleterious(0.03) possibly_damaging(0.474) TCGA-66-2781-01 19 12738776 12738776 A - ZNF791 Frame_Shift_Del p.K145Nfs*116 0.28 TCGA-66-2781-01 19 1789540 1789540 G A ATP8B3 Missense_Mutation p.R889C 0.35 tolerated(0.08) possibly_damaging(0.86) TCGA-66-2781-01 19 21240364 21240364 C T ZNF430 Missense_Mutation p.T417I 0.25 tolerated(0.07) benign(0.406) TCGA-66-2781-01 19 22785287 22785287 G T AC011467.1 5'Flank 0.19 TCGA-66-2781-01 19 31769803 31769803 T G TSHZ3 Missense_Mutation p.H299P 0.06 deleterious(0) probably_damaging(1) TCGA-66-2781-01 19 36884570 36884570 T A ZFP82 Missense_Mutation p.K224N 0.08 deleterious(0) probably_damaging(0.999) TCGA-66-2781-01 19 50780014 50780014 G T MYH14 Silent p.R1227R 0.04 TCGA-66-2781-01 19 9049179 9049179 G A MUC16 Missense_Mutation p.P10818S 0.32 benign(0) TCGA-66-2781-01 1 100318210 100318210 G A AGL Intron 0.16 TCGA-66-2781-01 1 12884858 12884858 C A PRAMEF11 Missense_Mutation p.C418F 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-66-2781-01 1 152277864 152277864 A G FLG Silent p.R3166R 0.31 TCGA-66-2781-01 1 152325143 152325143 G T FLG2 Missense_Mutation p.H1707N 0.17 benign(0.118) TCGA-66-2781-01 1 158651388 158651388 A G SPTA1 Silent p.L154L 0.27 TCGA-66-2781-01 1 160850481 160850481 A T ITLN1 Nonsense_Mutation p.Y194* 0.30 TCGA-66-2781-01 1 173933297 173933297 C A RC3H1 Missense_Mutation p.A549S 0.26 tolerated(0.36) benign(0.047) TCGA-66-2781-01 1 17552360 17552360 G A PADI1 Missense_Mutation p.D155N 0.21 tolerated(0.09) probably_damaging(1) TCGA-66-2781-01 1 196436902 196436902 G A KCNT2 Silent p.S158S 0.09 TCGA-66-2781-01 1 215848337 215848337 G T USH2A Missense_Mutation p.L4306I 0.28 benign(0.222) TCGA-66-2781-01 1 216850766 216850766 C G ESRRG Missense_Mutation p.E47Q 0.31 deleterious(0) possibly_damaging(0.636) TCGA-66-2781-01 1 21936075 21936075 A G RAP1GAP Missense_Mutation p.F419S 0.15 deleterious(0) probably_damaging(0.999) TCGA-66-2781-01 1 223177009 223177009 C G DISP1 Missense_Mutation p.S757W 0.22 deleterious(0.01) possibly_damaging(0.897) TCGA-66-2781-01 1 228509756 228509756 G A OBSCN Missense_Mutation p.V6029I 0.15 benign(0.283) TCGA-66-2781-01 1 248570209 248570209 C A OR2T1 Missense_Mutation p.A305D 0.37 deleterious(0.01) probably_damaging(0.996) TCGA-66-2781-01 1 25655546 25655546 A C RHD 3'UTR 0.17 TCGA-66-2781-01 1 39799867 39799867 A G MACF1 Intron 0.03 TCGA-66-2781-01 1 60476071 60476071 C T C1orf87 Silent p.L395L 0.13 TCGA-66-2781-01 1 70716181 70716181 G A SRSF11 Missense_Mutation p.V418I 0.21 tolerated_low_confidence(0.8) possibly_damaging(0.827) TCGA-66-2781-01 1 74701805 74701805 C T FPGT-TNNI3K Silent p.V134V 0.08 TCGA-66-2781-01 1 82408777 82408777 C T LPHN2 Silent p.P174P 0.18 TCGA-66-2781-01 1 85279701 85279701 T C LPAR3 Missense_Mutation p.D297G 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-66-2781-01 1 89876049 89876049 C A GBP1P1 RNA 0.11 TCGA-66-2781-01 20 30231265 30231265 G A COX4I2 Nonsense_Mutation p.W102* 0.28 TCGA-66-2781-01 21 19715859 19715859 A G TMPRSS15 Silent p.Y464Y 0.43 TCGA-66-2781-01 22 24837011 24837011 G A ADORA2A Missense_Mutation p.A265T 0.15 tolerated(0.44) benign(0.03) TCGA-66-2781-01 22 51011971 51011971 C T CPT1B Missense_Mutation p.A382T 0.25 deleterious(0) probably_damaging(0.98) TCGA-66-2781-01 2 101646111 101646111 G A TBC1D8 Silent p.L673L 0.07 TCGA-66-2781-01 2 109380809 109380809 G A RANBP2 Missense_Mutation p.A1272T 0.22 deleterious(0) possibly_damaging(0.7) TCGA-66-2781-01 2 135744425 135744425 G A MAP3K19 Missense_Mutation p.H673Y 0.13 tolerated(0.05) benign(0.025) TCGA-66-2781-01 2 136566354 136566354 C A LCT Missense_Mutation p.S1188I 0.27 tolerated(0.09) possibly_damaging(0.591) TCGA-66-2781-01 2 139316664 139316664 C G SPOPL Missense_Mutation p.R185G 0.03 tolerated(0.35) benign(0.029) TCGA-66-2781-01 2 168105153 168105153 T A XIRP2 Silent p.G2417G 0.28 TCGA-66-2781-01 2 170029730 170029730 G T LRP2 Missense_Mutation p.S3673R 0.18 benign(0.14) TCGA-66-2781-01 2 170042283 170042283 C T LRP2 Missense_Mutation p.R3192Q 0.27 probably_damaging(0.987) TCGA-66-2781-01 2 198968582 198968582 G - PLCL1 Frame_Shift_Del p.A1011Qfs*5 0.19 TCGA-66-2781-01 2 201760025 201760025 G A NIF3L1 Missense_Mutation p.C213Y 0.20 deleterious(0) probably_damaging(0.998) TCGA-66-2781-01 2 223917651 223917651 G A KCNE4 Missense_Mutation p.E35K 0.04 tolerated(0.05) probably_damaging(0.996) TCGA-66-2781-01 2 233344865 233344865 A G ECEL1 Nonstop_Mutation p.*776Rext*78 0.29 TCGA-66-2781-01 2 240951107 240951107 C T NDUFA10 Missense_Mutation p.E226K 0.31 tolerated(0.07) benign(0.232) TCGA-66-2781-01 2 27676897 27676897 C T IFT172 Silent p.G1221G 0.16 TCGA-66-2781-01 2 32466102 32466102 C G NLRC4 Missense_Mutation p.A784P 0.37 deleterious(0.01) possibly_damaging(0.836) TCGA-66-2781-01 2 42871290 42871290 C G MTA3 Silent p.V135V 0.09 TCGA-66-2781-01 2 71043700 71043700 G T CLEC4F Missense_Mutation p.N271K 0.25 tolerated(0.4) benign(0.054) TCGA-66-2781-01 2 79313613 79313613 C A REG1B Missense_Mutation p.M67I 0.33 tolerated(0.18) benign(0.02) TCGA-66-2781-01 2 79363918 79363918 G T REG1P RNA 0.34 TCGA-66-2781-01 3 114026870 114026870 G A TIGIT Silent p.G209G 0.16 TCGA-66-2781-01 3 121641918 121641940 CCAGGGTACTATTCCTTTATATC - SLC15A2 Frame_Shift_Del p.R301Ifs*24 0.09 TCGA-66-2781-01 3 142567068 142567068 T G PCOLCE2 Missense_Mutation p.N147H 0.62 tolerated(1) benign(0.001) TCGA-66-2781-01 3 155203221 155203221 G A PLCH1 Silent p.D974D 0.15 TCGA-66-2781-01 3 164786893 164786893 C A SI Missense_Mutation p.V116F 0.52 tolerated(0.05) benign(0.012) TCGA-66-2781-01 3 179320569 179320569 A G MRPL47 Silent p.L39L 0.07 TCGA-66-2781-01 3 44685345 44685345 G A ZNF197 Missense_Mutation p.G908E 0.30 deleterious(0.05) probably_damaging(1) TCGA-66-2781-01 3 47316965 47316965 A G KIF9 Silent p.L37L 0.16 TCGA-66-2781-01 3 52366376 52366376 G T DNAH1 Missense_Mutation p.A418S 0.20 benign(0.031) TCGA-66-2781-01 4 156634686 156634686 C T GUCY1A3 Missense_Mutation p.A508V 0.36 deleterious(0.01) benign(0.135) TCGA-66-2781-01 4 62542637 62542637 T - LPHN3 Frame_Shift_Del p.Y121* 0.25 TCGA-66-2781-01 5 102465368 102465368 C A PPIP5K2 Missense_Mutation p.F25L 0.21 tolerated_low_confidence(0.63) benign(0.001) TCGA-66-2781-01 5 153056685 153056685 G C GRIA1 Missense_Mutation p.W341C 0.20 deleterious(0) probably_damaging(1) TCGA-66-2781-01 5 160838029 160838029 T A GABRB2 Missense_Mutation p.R165W 0.23 deleterious(0) probably_damaging(0.998) TCGA-66-2781-01 5 169446101 169446101 G T DOCK2 Missense_Mutation p.D1124Y 0.33 deleterious(0) benign(0.012) TCGA-66-2781-01 5 22078793 22078793 G T CDH12 5'UTR 0.24 TCGA-66-2781-01 5 45262200 45262200 C G HCN1 Missense_Mutation p.R832S 0.33 tolerated_low_confidence(0.12) benign(0.055) TCGA-66-2781-01 5 45262826 45262826 G A HCN1 Nonsense_Mutation p.Q624* 0.11 TCGA-66-2781-01 6 10764777 10764777 C G MAK Missense_Mutation p.A594P 0.29 tolerated(0.12) benign(0.005) TCGA-66-2781-01 6 109871346 109871346 C T AK9 Missense_Mutation p.E971K 0.12 deleterious(0) probably_damaging(0.944) TCGA-66-2781-01 6 11190369 11190369 T A NEDD9 Missense_Mutation p.E578V 0.28 tolerated(0.1) benign(0.192) TCGA-66-2781-01 6 12161770 12161770 G T HIVEP1 Missense_Mutation p.D2196Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-66-2781-01 6 136599751 136599751 G T BCLAF1 Silent p.R90R 0.11 TCGA-66-2781-01 6 154412554 154412554 A C OPRM1 Missense_Mutation p.N464H 0.12 tolerated(0.06) possibly_damaging(0.854) TCGA-66-2781-01 6 166733654 166733654 C T SFT2D1 3'UTR 0.12 TCGA-66-2781-01 6 30856442 30856442 A G DDR1 Intron 0.19 TCGA-66-2781-01 6 31777883 31777883 C T HSPA1L Missense_Mutation p.G623R 0.22 deleterious_low_confidence(0.04) benign(0.204) TCGA-66-2781-01 6 38952061 38952061 G A DNAH8 Missense_Mutation p.R4127H 0.25 benign(0.125) TCGA-66-2781-01 6 47649746 47649746 G T GPR111 Missense_Mutation p.R484L 0.23 deleterious(0) probably_damaging(1) TCGA-66-2781-01 6 49754437 49754437 G A PGK2 Missense_Mutation p.S155F 0.26 deleterious(0) probably_damaging(0.952) TCGA-66-2781-01 6 88854426 88854426 G C CNR1 Missense_Mutation p.L190V 0.08 deleterious(0) probably_damaging(0.999) TCGA-66-2781-01 7 100732826 100732826 A G TRIM56 Missense_Mutation p.I745V 0.44 tolerated(0.29) benign(0.015) TCGA-66-2781-01 7 101870787 101870787 G C CUX1 Missense_Mutation p.E1102Q 0.12 tolerated(0.07) unknown(0) TCGA-66-2781-01 7 139791688 139791688 C T KDM7A Missense_Mutation p.G883S 0.46 tolerated(0.19) benign(0.022) TCGA-66-2781-01 7 142562028 142562028 C A EPHB6 Missense_Mutation p.T157K 0.13 deleterious(0) probably_damaging(1) TCGA-66-2781-01 7 142640367 142640367 C A KEL Missense_Mutation p.Q589H 0.43 tolerated(0.08) benign(0.111) TCGA-66-2781-01 7 34698163 34698163 T C NPSR1 Missense_Mutation p.S47P 0.18 tolerated(0.12) probably_damaging(0.958) TCGA-66-2781-01 7 36552884 36552884 C A AOAH Missense_Mutation p.V568L 0.22 tolerated(0.36) benign(0.411) TCGA-66-2781-01 7 66474576 66474576 G T TYW1 Missense_Mutation p.A94S 0.29 tolerated(0.07) probably_damaging(0.917) TCGA-66-2781-01 7 72727109 72727109 T G TRIM50 Missense_Mutation p.E424D 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-66-2781-01 7 82545860 82545860 C T PCLO Silent p.K3814K 0.16 TCGA-66-2781-01 7 94058634 94058634 G T COL1A2 Missense_Mutation p.E1282D 0.42 unknown(0) TCGA-66-2781-01 8 116632234 116632234 C A TRPS1 Missense_Mutation p.G31C 0.54 deleterious_low_confidence(0.02) possibly_damaging(0.58) TCGA-66-2781-01 8 119936477 119936477 C A TNFRSF11B 3'UTR 0.11 TCGA-66-2781-01 8 134030218 134030218 G T TG Missense_Mutation p.G2253V 0.43 deleterious(0.01) probably_damaging(0.995) TCGA-66-2781-01 8 136659359 136659359 C G KHDRBS3 3'UTR 0.12 TCGA-66-2781-01 8 145689491 145689491 G T CYHR1 Intron 0.41 TCGA-66-2781-01 8 71075761 71075761 G T NCOA2 Silent p.P257P 0.21 TCGA-66-2781-01 8 86356323 86356323 G T CA3 Missense_Mutation p.D138Y 0.40 deleterious(0) probably_damaging(1) TCGA-66-2781-01 9 137809662 137809662 A G FCN1 Missense_Mutation p.F19S 0.15 tolerated(0.09) benign(0.006) TCGA-66-2781-01 9 140130626 140130626 C A SLC34A3 Missense_Mutation p.P520T 0.41 deleterious(0.02) benign(0.188) TCGA-66-2781-01 9 19378869 19378869 G A RPS6 Silent p.P62P 0.40 TCGA-66-2781-01 9 5358283 5358283 C T PLGRKT Missense_Mutation p.E134K 0.28 deleterious(0.01) probably_damaging(0.989) TCGA-66-2781-01 9 97062558 97062558 G - ZNF169 Frame_Shift_Del p.R241Efs*91 0.34 TCGA-66-2781-01 X 118147105 118147105 C T LONRF3 Missense_Mutation p.H639Y 0.52 tolerated(0.09) possibly_damaging(0.723) TCGA-66-2781-01 X 120181515 120181515 C T GLUD2 5'UTR 0.13 TCGA-66-2781-01 X 24597532 24597532 C A PCYT1B Silent p.S203S 0.36 TCGA-66-2781-01 X 30237095 30237095 C A MAGEB2 Missense_Mutation p.T133K 0.15 tolerated(0.13) benign(0.017) TCGA-66-2781-01 X 76855029 76855029 T G ATRX Missense_Mutation p.K1936T 0.20 benign(0.083) TCGA-66-2781-01 X 91873392 91873392 C T PCDH11X Missense_Mutation p.A1166V 0.51 tolerated_low_confidence(0.33) benign(0.002) TCGA-66-2781-01 X 91873712 91873712 C A PCDH11X Missense_Mutation p.Q1273K 0.50 tolerated_low_confidence(0.05) benign(0.031) TCGA-66-2782-01 10 112356233 112356233 G - SMC3 Frame_Shift_Del p.D681Mfs*9 0.21 TCGA-66-2782-01 10 118220583 118220583 T A PNLIPRP3 Missense_Mutation p.I224N 0.18 deleterious(0) benign(0.376) TCGA-66-2782-01 10 119013884 119013884 C A SLC18A2 Intron 0.19 TCGA-66-2782-01 10 119043529 119043529 A T PDZD8 Silent p.L905L 0.24 TCGA-66-2782-01 10 124358344 124358344 G A DMBT1 Missense_Mutation p.G1004D 0.16 deleterious(0) probably_damaging(1) TCGA-66-2782-01 10 126505162 126505162 C T FAM175B Missense_Mutation p.P61S 0.09 deleterious(0.03) possibly_damaging(0.901) TCGA-66-2782-01 10 127422226 127422226 G A EDRF1 Silent p.K433K 0.21 TCGA-66-2782-01 10 13251236 13251236 G T MCM10 Missense_Mutation p.G852C 0.25 deleterious(0) probably_damaging(0.992) TCGA-66-2782-01 10 16981140 16981140 C G CUBN Missense_Mutation p.G1852A 0.21 deleterious(0) probably_damaging(0.997) TCGA-66-2782-01 10 18789804 18789804 C T CACNB2 Missense_Mutation p.P174S 0.10 deleterious(0) probably_damaging(0.999) TCGA-66-2782-01 10 26559634 26559634 C G GAD2 Silent p.L347L 0.09 TCGA-66-2782-01 10 38651219 38651219 T A HSD17B7P2 RNA 0.21 TCGA-66-2782-01 10 50530680 50530680 C G C10orf71 Missense_Mutation p.S30R 0.30 deleterious(0) probably_damaging(0.999) TCGA-66-2782-01 10 64430183 64430183 T C ZNF365 3'UTR 0.18 TCGA-66-2782-01 10 74684372 74684372 A T OIT3 Missense_Mutation p.E446V 0.16 deleterious(0.02) possibly_damaging(0.733) TCGA-66-2782-01 10 75410749 75410749 G T SYNPO2L Intron 0.20 TCGA-66-2782-01 10 7866291 7866291 A T TAF3 Silent p.T59T 0.20 TCGA-66-2782-01 10 82122201 82122201 T A DYDC2 Missense_Mutation p.M15K 0.18 deleterious(0) probably_damaging(0.992) TCGA-66-2782-01 10 83635523 83635523 G A NRG3 Missense_Mutation p.G143R 0.26 tolerated(0.2) possibly_damaging(0.467) TCGA-66-2782-01 10 95372425 95372425 T C PDE6C 5'UTR 0.23 TCGA-66-2782-01 10 96447970 96447970 C T CYP2C18 Silent p.S140S 0.19 TCGA-66-2782-01 11 119206154 119206154 G C RNF26 Missense_Mutation p.A108P 0.11 tolerated(0.06) possibly_damaging(0.451) TCGA-66-2782-01 11 124757085 124757085 G T ROBO4 Silent p.P741P 0.14 TCGA-66-2782-01 11 124757306 124757306 G A ROBO4 Missense_Mutation p.P716S 0.10 tolerated(0.3) benign(0.064) TCGA-66-2782-01 11 128807358 128807358 C T TP53AIP1 Intron 0.18 TCGA-66-2782-01 11 30034013 30034013 A T KCNA4 Nonsense_Mutation p.C71* 0.33 TCGA-66-2782-01 11 35313935 35313935 G A SLC1A2 Silent p.I330I 0.14 TCGA-66-2782-01 11 36614109 36614109 C A RAG2 3'UTR 0.30 TCGA-66-2782-01 11 43411364 43411364 G A TTC17 Missense_Mutation p.D138N 0.31 tolerated(0.28) benign(0.008) TCGA-66-2782-01 11 44102761 44102761 G C ACCS Silent p.T334T 0.29 TCGA-66-2782-01 11 45246232 45246232 C G PRDM11 Missense_Mutation p.H403D 0.15 tolerated_low_confidence(0.56) benign(0.005) TCGA-66-2782-01 11 55111022 55111022 A T OR4A16 Missense_Mutation p.M116L 0.22 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-66-2782-01 11 55433006 55433006 G T OR4C6 Missense_Mutation p.V122L 0.23 deleterious_low_confidence(0.02) benign(0.06) TCGA-66-2782-01 11 55541647 55541647 C - OR5D13 Frame_Shift_Del p.H246Tfs*2 0.19 TCGA-66-2782-01 11 55861452 55861452 C A OR8I2 Silent p.A223A 0.24 TCGA-66-2782-01 11 56000216 56000216 G T OR5T2 Missense_Mutation p.T149K 0.22 deleterious(0) probably_damaging(0.963) TCGA-66-2782-01 11 57886014 57886014 G A OR9I1 Silent p.F301F 0.11 TCGA-66-2782-01 11 57886577 57886577 G C OR9I1 Missense_Mutation p.L114V 0.11 deleterious(0.04) possibly_damaging(0.724) TCGA-66-2782-01 11 57958547 57958547 G T OR9Q2 Missense_Mutation p.Q195H 0.27 tolerated(0.06) probably_damaging(1) TCGA-66-2782-01 11 57958548 57958548 G T OR9Q2 Nonsense_Mutation p.E196* 0.26 TCGA-66-2782-01 11 58034403 58034403 C T OR10W1 3'UTR 0.18 TCGA-66-2782-01 11 58207079 58207079 G A OR5B12 Silent p.L182L 0.11 TCGA-66-2782-01 11 58207084 58207084 G A OR5B12 Missense_Mutation p.P181S 0.11 tolerated_low_confidence(0.11) benign(0.274) TCGA-66-2782-01 11 5841740 5841740 C G OR52N2 Missense_Mutation p.R59G 0.33 tolerated(0.31) benign(0.297) TCGA-66-2782-01 11 608828 608828 C T PHRF1 Silent p.S1123S 0.22 TCGA-66-2782-01 11 60971602 60971602 C A PGA3 Missense_Mutation p.S27Y 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-66-2782-01 11 61067638 61067638 C A DDB1 Missense_Mutation p.K1131N 0.20 deleterious(0.02) probably_damaging(0.985) TCGA-66-2782-01 11 61503805 61503805 G T DAGLA Missense_Mutation p.A452S 0.24 deleterious(0) probably_damaging(0.997) TCGA-66-2782-01 11 63487075 63487075 G A RTN3 Missense_Mutation p.M367I 0.05 tolerated(0.06) benign(0.03) TCGA-66-2782-01 11 6789994 6789994 C A OR2AG2 Missense_Mutation p.Q65H 0.26 tolerated(0.13) probably_damaging(0.977) TCGA-66-2782-01 11 7022255 7022255 C A ZNF214 Missense_Mutation p.G220V 0.33 tolerated(0.26) benign(0.004) TCGA-66-2782-01 11 83585513 83585513 G T DLG2 Silent p.T505T 0.23 TCGA-66-2782-01 11 93800830 93800830 T A HEPHL1 Missense_Mutation p.F326Y 0.10 deleterious(0) probably_damaging(1) TCGA-66-2782-01 11 93844934 93844934 C A HEPHL1 Silent p.I1118I 0.10 TCGA-66-2782-01 12 100041923 100041923 G T FAM71C 5'UTR 0.28 TCGA-66-2782-01 12 10133281 10133281 C A CLEC12A Silent p.A170A 0.28 TCGA-66-2782-01 12 102067297 102067297 C A MYBPC1 Silent p.I895I 0.26 TCGA-66-2782-01 12 104099407 104099407 C T STAB2 Intron 0.27 TCGA-66-2782-01 12 10854608 10854608 T A YBX3 Missense_Mutation p.Y335F 0.23 deleterious(0.01) probably_damaging(0.986) TCGA-66-2782-01 12 113867083 113867083 C T SDSL Silent p.A111A 0.10 TCGA-66-2782-01 12 116429528 116429528 G A MED13L Silent p.T1077T 0.09 TCGA-66-2782-01 12 123282703 123282703 G A CCDC62 Silent p.Q311Q 0.28 TCGA-66-2782-01 12 130832721 130832721 A T PIWIL1 Missense_Mutation p.S243C 0.11 deleterious(0) benign(0.379) TCGA-66-2782-01 12 133363343 133363343 C A GOLGA3 Missense_Mutation p.A948S 0.23 tolerated(0.5) benign(0.062) TCGA-66-2782-01 12 13906731 13906731 G A GRIN2B Missense_Mutation p.P177L 0.27 deleterious(0.01) probably_damaging(1) TCGA-66-2782-01 12 21788641 21788641 C A LDHB Silent p.G280G 0.21 TCGA-66-2782-01 12 31945117 31945117 C - H3F3C 5'UTR 0.27 TCGA-66-2782-01 12 3649958 3649958 G A PRMT8 Splice_Site p.X87_splice 0.19 TCGA-66-2782-01 12 40760848 40760848 G T LRRK2 Silent p.R2477R 0.15 TCGA-66-2782-01 12 43770384 43770384 C T ADAMTS20 Missense_Mutation p.D1690N 0.13 tolerated(0.31) benign(0.036) TCGA-66-2782-01 12 51566306 51566306 C A TFCP2 5'UTR 0.28 TCGA-66-2782-01 12 52451220 52451220 G A NR4A1 Nonsense_Mutation p.W495* 0.18 TCGA-66-2782-01 12 53070088 53070088 G A KRT1 Silent p.Y482Y 0.15 TCGA-66-2782-01 12 54379542 54379542 G A HOXC10 Missense_Mutation p.A167T 0.13 tolerated(0.58) benign(0) TCGA-66-2782-01 12 54379543 54379543 C A HOXC10 Missense_Mutation p.A167D 0.11 tolerated(0.37) benign(0.002) TCGA-66-2782-01 12 57167625 57167625 A T HSD17B6 5'UTR 0.26 TCGA-66-2782-01 12 72962382 72962382 G C TRHDE Missense_Mutation p.G648R 0.15 deleterious(0.02) benign(0.05) TCGA-66-2782-01 12 73056875 73056875 C T TRHDE Missense_Mutation p.S992F 0.24 deleterious(0) probably_damaging(0.949) TCGA-66-2782-01 12 7476890 7476890 G T ACSM4 Missense_Mutation p.A444S 0.18 tolerated(0.65) benign(0.019) TCGA-66-2782-01 12 78515828 78515828 C A NAV3 Silent p.G1286G 0.16 TCGA-66-2782-01 12 7869565 7869565 G A DPPA3 Silent p.K124K 0.20 TCGA-66-2782-01 12 80645556 80645556 G T OTOGL Missense_Mutation p.W370L 0.14 deleterious(0) benign(0.075) TCGA-66-2782-01 12 80645557 80645557 G T OTOGL Missense_Mutation p.W370C 0.15 deleterious(0) probably_damaging(0.968) TCGA-66-2782-01 12 9913424 9913424 C T CD69 5'UTR 0.14 TCGA-66-2782-01 12 99222964 99222964 C A ANKS1B Missense_Mutation p.R1018S 0.16 tolerated(0.06) benign(0.027) TCGA-66-2782-01 13 102527548 102527548 T A FGF14 Missense_Mutation p.S103C 0.11 deleterious(0.01) possibly_damaging(0.879) TCGA-66-2782-01 13 107187250 107187250 T C EFNB2 Silent p.R21R 0.11 TCGA-66-2782-01 13 32722036 32722036 G T FRY Missense_Mutation p.R448S 0.19 deleterious(0) probably_damaging(0.982) TCGA-66-2782-01 13 43462315 43462315 G T EPSTI1 3'UTR 0.19 TCGA-66-2782-01 13 45533569 45533569 C G NUFIP1 Missense_Mutation p.G323A 0.17 tolerated(0.43) benign(0.005) TCGA-66-2782-01 13 52034834 52034834 G C RPS4XP16 RNA 0.14 TCGA-66-2782-01 13 72204792 72204792 G A DACH1 Missense_Mutation p.A343V 0.07 possibly_damaging(0.755) TCGA-66-2782-01 13 73636282 73636282 C T KLF5 Missense_Mutation p.P182L 0.19 tolerated(0.06) benign(0.32) TCGA-66-2782-01 13 88329495 88329495 G A SLITRK5 Missense_Mutation p.V618I 0.10 tolerated(0.87) benign(0.001) TCGA-66-2782-01 14 20249325 20249325 C T OR4M1 Missense_Mutation p.P282S 0.12 deleterious(0.01) probably_damaging(1) TCGA-66-2782-01 14 20586279 20586279 C T OR4K17 Silent p.S238S 0.22 TCGA-66-2782-01 14 23866269 23866269 C A MYH6 Missense_Mutation p.V691F 0.21 deleterious(0) probably_damaging(0.946) TCGA-66-2782-01 14 23866270 23866270 C A MYH6 Silent p.L690L 0.21 TCGA-66-2782-01 14 24610496 24610496 G A EMC9 Silent p.I6I 0.16 TCGA-66-2782-01 14 29237890 29237890 G T FOXG1 Missense_Mutation p.G469W 0.22 deleterious_low_confidence(0) possibly_damaging(0.872) TCGA-66-2782-01 14 69798220 69798220 A T GALNT16 Missense_Mutation p.S244C 0.26 deleterious(0) probably_damaging(0.999) TCGA-66-2782-01 14 73220073 73220073 G T DPF3 Missense_Mutation p.A67D 0.25 deleterious(0) probably_damaging(0.958) TCGA-66-2782-01 14 96768355 96768355 T A ATG2B Missense_Mutation p.N1710Y 0.26 deleterious(0) probably_damaging(0.994) TCGA-66-2782-01 14 99183499 99183499 C T C14orf177 Missense_Mutation p.P89L 0.19 deleterious_low_confidence(0.03) possibly_damaging(0.851) TCGA-66-2782-01 15 22940825 22940826 GC - CYFIP1 Frame_Shift_Del p.R365Lfs*68 0.26 TCGA-66-2782-01 15 25453289 25453289 C T SNORD115-21 RNA 0.12 TCGA-66-2782-01 15 25474130 25474130 C A SNORD115-32 RNA 0.22 TCGA-66-2782-01 15 28501024 28501024 C T HERC2 Silent p.E955E 0.29 TCGA-66-2782-01 15 28501025 28501025 T C HERC2 Missense_Mutation p.E955G 0.29 benign(0.186) TCGA-66-2782-01 15 35273851 35273851 G A ZNF770 Silent p.P595P 0.14 TCGA-66-2782-01 15 43067484 43067484 A G TTBK2 Missense_Mutation p.V616A 0.11 tolerated_low_confidence(0.44) benign(0.004) TCGA-66-2782-01 15 43484984 43484984 C T CCNDBP1 Silent p.L302L 0.13 TCGA-66-2782-01 15 43827232 43827232 G C PPIP5K1 Missense_Mutation p.S1314R 0.21 deleterious_low_confidence(0.02) benign(0.128) TCGA-66-2782-01 15 48782253 48782253 G C FBN1 Missense_Mutation p.F959L 0.17 benign(0.016) TCGA-66-2782-01 15 50733609 50733609 G A USP8 Silent p.E56E 0.22 TCGA-66-2782-01 15 53815464 53815464 G C WDR72 Missense_Mutation p.D1068E 0.10 tolerated(0.18) benign(0.031) TCGA-66-2782-01 15 69323869 69323869 C T NOX5 Nonsense_Mutation p.Q113* 0.07 TCGA-66-2782-01 15 71184338 71184338 C A THAP10 Missense_Mutation p.V92L 0.23 tolerated(0.44) benign(0.002) TCGA-66-2782-01 15 71184339 71184339 C A THAP10 Silent p.R91R 0.23 TCGA-66-2782-01 15 76225439 76225439 A G FBXO22 Missense_Mutation p.K403R 0.23 tolerated(0.08) benign(0.2) TCGA-66-2782-01 15 85326498 85326498 G C ZNF592 Missense_Mutation p.D198H 0.11 deleterious(0.01) probably_damaging(1) TCGA-66-2782-01 15 85327594 85327594 A C ZNF592 Missense_Mutation p.N563T 0.25 deleterious(0) probably_damaging(0.997) TCGA-66-2782-01 15 89382026 89382026 C A ACAN Missense_Mutation p.P68Q 0.12 deleterious(0) unknown(0) TCGA-66-2782-01 15 89386799 89386799 G T ACAN Missense_Mutation p.G324V 0.22 deleterious(0) unknown(0) TCGA-66-2782-01 15 90213330 90213330 G T PLIN1 Missense_Mutation p.T160N 0.09 deleterious(0) possibly_damaging(0.809) TCGA-66-2782-01 16 18827849 18827849 G A SMG1 Silent p.D3359D 0.10 TCGA-66-2782-01 16 20331589 20331589 G A GP2 Silent p.L288L 0.11 TCGA-66-2782-01 16 20634799 20634799 C T ACSM1 3'UTR 0.15 TCGA-66-2782-01 16 21065834 21065834 C G DNAH3 Missense_Mutation p.D1316H 0.23 tolerated(0.17) benign(0.006) TCGA-66-2782-01 16 24202448 24202448 G C PRKCB Missense_Mutation p.G587A 0.21 tolerated(0.12) benign(0.075) TCGA-66-2782-01 16 27460372 27460372 G C IL21R Missense_Mutation p.G462A 0.26 tolerated(0.28) benign(0.276) TCGA-66-2782-01 16 29110442 29110442 G C RRN3P2 RNA 0.15 TCGA-66-2782-01 16 56487240 56487240 G C OGFOD1 Missense_Mutation p.D74H 0.15 tolerated(0.07) benign(0.276) TCGA-66-2782-01 16 77317684 77317684 A T ADAMTS18 3'UTR 0.62 TCGA-66-2782-01 16 81161382 81161382 G T PKD1L2 RNA 0.34 TCGA-66-2782-01 17 10204220 10204220 C G MYH13 3'UTR 0.37 TCGA-66-2782-01 17 10298533 10298533 C A MYH8 Nonsense_Mutation p.E1627* 0.25 TCGA-66-2782-01 17 27794161 27794161 A T TAOK1 Splice_Site p.X45_splice 0.24 TCGA-66-2782-01 17 28506279 28506279 G A NSRP1 Missense_Mutation p.E158K 0.12 deleterious(0.01) possibly_damaging(0.728) TCGA-66-2782-01 17 29527558 29527558 G A NF1 Nonsense_Mutation p.W336* 0.36 TCGA-66-2782-01 17 2966055 2966055 T C OR1D5 Missense_Mutation p.M283V 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-66-2782-01 17 30677271 30677273 CTC TT ZNF207 5'UTR 0.17 TCGA-66-2782-01 17 33904106 33904106 G C PEX12 Missense_Mutation p.L211V 0.11 tolerated(0.48) benign(0.078) TCGA-66-2782-01 17 41158891 41158891 A T IFI35 5'UTR 0.50 TCGA-66-2782-01 17 42328923 42328923 C A SLC4A1 Missense_Mutation p.R782L 0.39 tolerated(0.83) benign(0.007) TCGA-66-2782-01 17 46868812 46868812 G C TTLL6 Silent p.L384L 0.50 TCGA-66-2782-01 17 47490653 47490653 C G PHB Intron 0.45 TCGA-66-2782-01 17 5039998 5039998 C G USP6 Missense_Mutation p.P243R 0.31 deleterious_low_confidence(0.01) probably_damaging(0.942) TCGA-66-2782-01 17 51901585 51901585 G T KIF2B Silent p.V397V 0.34 TCGA-66-2782-01 17 75210048 75210048 G C SEC14L1 Silent p.L697L 0.38 TCGA-66-2782-01 17 7577079 7577079 C A TP53 Nonsense_Mutation p.E287* 0.37 TCGA-66-2782-01 17 80789004 80789004 C A ZNF750 Nonsense_Mutation p.G443* 0.44 TCGA-66-2782-01 17 8194247 8194247 C T SLC25A35 Missense_Mutation p.M214I 0.15 tolerated(0.69) benign(0.001) TCGA-66-2782-01 17 9729400 9729400 G T GLP2R Missense_Mutation p.R7M 0.26 deleterious_low_confidence(0.05) unknown(0) TCGA-66-2782-01 18 14530505 14530505 A G POTEC Missense_Mutation p.I368T 0.05 tolerated(0.59) possibly_damaging(0.824) TCGA-66-2782-01 18 19154062 19154062 C A ESCO1 Missense_Mutation p.R248I 0.30 deleterious(0) benign(0.157) TCGA-66-2782-01 18 22642648 22642648 C A ZNF521 3'UTR 0.21 TCGA-66-2782-01 18 32446126 32446126 C G DTNA Intron 0.12 TCGA-66-2782-01 18 51750520 51750520 C G MBD2 Missense_Mutation p.G137A 0.18 deleterious_low_confidence(0.05) possibly_damaging(0.794) TCGA-66-2782-01 18 55024483 55024483 C T ST8SIA3 Silent p.I214I 0.14 TCGA-66-2782-01 18 9886703 9886703 G A TXNDC2 Missense_Mutation p.R76H 0.04 tolerated(0.24) benign(0.005) TCGA-66-2782-01 19 10071348 10071348 G T COL5A3 Missense_Mutation p.S1690R 0.29 unknown(0) TCGA-66-2782-01 19 18971733 18971733 G A UPF1 Missense_Mutation p.R800H 0.33 deleterious(0) probably_damaging(0.994) TCGA-66-2782-01 19 21606630 21606630 C T ZNF493 Missense_Mutation p.S390L 0.16 deleterious(0.01) probably_damaging(0.985) TCGA-66-2782-01 19 22940767 22940767 G - ZNF99 Frame_Shift_Del p.Y649Tfs*21 0.16 TCGA-66-2782-01 19 23406082 23406082 G A ZNF724P Missense_Mutation p.S322F 0.15 tolerated(0.41) benign(0.003) TCGA-66-2782-01 19 33628618 33628618 T A WDR88 Silent p.A104A 0.30 TCGA-66-2782-01 19 37644202 37644202 G T ZNF585A Missense_Mutation p.S145Y 0.10 tolerated(0.29) possibly_damaging(0.89) TCGA-66-2782-01 19 38689102 38689102 G A SIPA1L3 Silent p.L1638L 0.14 TCGA-66-2782-01 19 41062978 41062978 G T SPTBN4 Missense_Mutation p.G1780V 0.18 deleterious(0) probably_damaging(0.999) TCGA-66-2782-01 19 47181865 47181865 C T PRKD2 Missense_Mutation p.R709H 0.21 deleterious(0) probably_damaging(0.999) TCGA-66-2782-01 19 50462151 50462151 T C SIGLEC11 Missense_Mutation p.E371G 0.08 deleterious(0) probably_damaging(0.928) TCGA-66-2782-01 19 51955814 51955814 C A SIGLEC8 Missense_Mutation p.G440V 0.24 tolerated(0.18) benign(0.004) TCGA-66-2782-01 19 54567014 54567014 G C VSTM1 Silent p.L6L 0.09 TCGA-66-2782-01 19 55176586 55176586 C A LILRB4 Missense_Mutation p.P238T 0.23 tolerated(0.07) benign(0.34) TCGA-66-2782-01 19 55316440 55316440 C G KIR2DL4 Missense_Mutation p.A90G 0.23 tolerated(0.1) benign(0.092) TCGA-66-2782-01 19 55693178 55693178 C T PTPRH Missense_Mutation p.E1098K 0.10 benign(0.16) TCGA-66-2782-01 19 55773947 55773947 C A HSPBP1 3'UTR 0.18 TCGA-66-2782-01 19 56153822 56153822 G A ZNF580 5'UTR 0.19 TCGA-66-2782-01 19 56368963 56368963 C G NLRP4 Intron 0.19 TCGA-66-2782-01 19 56424006 56424006 C A NLRP13 Missense_Mutation p.V393L 0.24 deleterious(0.04) possibly_damaging(0.527) TCGA-66-2782-01 19 56424007 56424007 C A NLRP13 Silent p.R392R 0.24 TCGA-66-2782-01 19 56466738 56466738 A T NLRP8 Missense_Mutation p.R438S 0.26 tolerated(0.25) benign(0.09) TCGA-66-2782-01 19 57286858 57286858 T C ZIM2 Missense_Mutation p.N261S 0.29 tolerated(0.27) benign(0.074) TCGA-66-2782-01 19 57328312 57328312 C A PEG3 Missense_Mutation p.V500F 0.23 deleterious(0.02) benign(0.058) TCGA-66-2782-01 19 57328313 57328313 C A PEG3 Missense_Mutation p.Q499H 0.23 tolerated(0.17) probably_damaging(0.94) TCGA-66-2782-01 19 7141735 7141735 C A INSR Missense_Mutation p.G879C 0.38 deleterious(0) probably_damaging(1) TCGA-66-2782-01 19 9084880 9084880 G T MUC16 Missense_Mutation p.T2312K 0.27 unknown(0) TCGA-66-2782-01 1 10363951 10363951 G A KIF1B Intron 0.13 TCGA-66-2782-01 1 110741236 110741236 A T SLC6A17 3'UTR 0.20 TCGA-66-2782-01 1 111663190 111663190 G C DRAM2 Silent p.V155V 0.11 TCGA-66-2782-01 1 112524810 112524810 G A KCND3 Missense_Mutation p.T180M 0.14 deleterious(0.03) benign(0.277) TCGA-66-2782-01 1 12888520 12888520 C A PRAMEF11 Nonsense_Mutation p.E2* 0.04 TCGA-66-2782-01 1 144886319 144886319 A G PDE4DIP Missense_Mutation p.V972A 0.09 tolerated(0.68) benign(0.03) TCGA-66-2782-01 1 145273436 145273436 G A NOTCH2NL Missense_Mutation p.G97E 0.05 tolerated(0.05) possibly_damaging(0.606) TCGA-66-2782-01 1 148017539 148017539 T C NBPF14 Silent p.L254L 0.09 TCGA-66-2782-01 1 149898740 149898740 T C SF3B4 Silent p.K78K 0.23 TCGA-66-2782-01 1 150478140 150478140 G C TARS2 Missense_Mutation p.R656T 0.17 deleterious(0) possibly_damaging(0.639) TCGA-66-2782-01 1 151288358 151288358 G T PI4KB Missense_Mutation p.H212Q 0.23 tolerated(0.08) benign(0.135) TCGA-66-2782-01 1 154987962 154987962 G C ZBTB7B Missense_Mutation p.E310Q 0.06 tolerated(0.41) benign(0.094) TCGA-66-2782-01 1 155701182 155701182 G A DAP3 Silent p.L293L 0.08 TCGA-66-2782-01 1 155701194 155701194 G C DAP3 Missense_Mutation p.M297I 0.05 tolerated(0.19) benign(0.004) TCGA-66-2782-01 1 155701791 155701791 G A DAP3 Silent p.R320R 0.12 TCGA-66-2782-01 1 155884147 155884147 C A KIAA0907 Intron 0.22 TCGA-66-2782-01 1 156563782 156563782 T C APOA1BP Missense_Mutation p.L258P 0.22 deleterious(0) probably_damaging(0.999) TCGA-66-2782-01 1 158736259 158736259 C T OR6N1 Missense_Mutation p.G72S 0.30 deleterious(0.01) benign(0.244) TCGA-66-2782-01 1 159832334 159832334 C T VSIG8 5'UTR 0.24 TCGA-66-2782-01 1 159832449 159832449 C T VSIG8 5'Flank 0.23 TCGA-66-2782-01 1 171251429 171251429 T A FMO1 Silent p.P380P 0.26 TCGA-66-2782-01 1 180003168 180003168 G A CEP350 Silent p.L1299L 0.22 TCGA-66-2782-01 1 182356423 182356423 C A GLUL Missense_Mutation p.L57F 0.23 deleterious(0.01) possibly_damaging(0.508) TCGA-66-2782-01 1 196646728 196646728 A G CFH Missense_Mutation p.I184V 0.23 tolerated(0.1) benign(0.026) TCGA-66-2782-01 1 196883661 196883661 C A CFHR4 Missense_Mutation p.A405D 0.20 tolerated(0.09) possibly_damaging(0.665) TCGA-66-2782-01 1 201682034 201682034 C A NAV1 Missense_Mutation p.Q283K 0.21 deleterious(0.01) possibly_damaging(0.858) TCGA-66-2782-01 1 201924671 201924671 G C TIMM17A Missense_Mutation p.R6P 0.11 deleterious(0.01) possibly_damaging(0.476) TCGA-66-2782-01 1 204006437 204006437 G C LINC00303 RNA 0.24 TCGA-66-2782-01 1 205117450 205117450 C G DSTYK Missense_Mutation p.V829L 0.22 deleterious(0) probably_damaging(0.973) TCGA-66-2782-01 1 205817012 205817012 C T PM20D1 Splice_Site p.X86_splice 0.19 TCGA-66-2782-01 1 205819137 205819137 C T PM20D1 Missense_Mutation p.V22I 0.18 tolerated(0.45) benign(0.006) TCGA-66-2782-01 1 205884468 205884468 G A SLC26A9 Intron 0.16 TCGA-66-2782-01 1 215848158 215848158 C A USH2A Missense_Mutation p.W4365C 0.19 benign(0.014) TCGA-66-2782-01 1 215848159 215848159 C A USH2A Missense_Mutation p.W4365L 0.19 benign(0.103) TCGA-66-2782-01 1 216850834 216850834 C T ESRRG Splice_Site p.X24_splice 0.26 TCGA-66-2782-01 1 220178660 220178660 T A EPRS Nonsense_Mutation p.K665* 0.22 TCGA-66-2782-01 1 226125443 226125443 C A LEFTY2 Nonsense_Mutation p.E267* 0.36 TCGA-66-2782-01 1 227327318 227327318 C A CDC42BPA Missense_Mutation p.R450L 0.25 deleterious(0.04) benign(0.2) TCGA-66-2782-01 1 2283537 2283537 T C MORN1 Intron 0.36 TCGA-66-2782-01 1 229773946 229773946 G C URB2 Missense_Mutation p.D1196H 0.20 deleterious(0.01) possibly_damaging(0.541) TCGA-66-2782-01 1 235386562 235386562 G T ARID4B Missense_Mutation p.N328K 0.25 deleterious(0) probably_damaging(0.998) TCGA-66-2782-01 1 237789106 237789106 T A RYR2 Splice_Site p.X2056_splice 0.24 TCGA-66-2782-01 1 238053355 238053355 C G ZP4 Missense_Mutation p.W99C 0.21 deleterious(0.01) possibly_damaging(0.76) TCGA-66-2782-01 1 244735962 244735962 A G C1orf101 Missense_Mutation p.Y613C 0.23 deleterious(0) probably_damaging(0.999) TCGA-66-2782-01 1 248343775 248343775 C T OR2M2 Missense_Mutation p.T163I 0.22 deleterious(0.03) benign(0.168) TCGA-66-2782-01 1 248685164 248685164 T C OR2G6 Missense_Mutation p.F73L 0.23 tolerated(0.12) benign(0.076) TCGA-66-2782-01 1 248789685 248789685 A T OR2T11 Missense_Mutation p.Y249N 0.28 deleterious(0) probably_damaging(0.949) TCGA-66-2782-01 1 248789955 248789955 T C OR2T11 Missense_Mutation p.I159V 0.25 tolerated(0.88) benign(0.014) TCGA-66-2782-01 1 248845000 248845000 T C OR14I1 Silent p.S202S 0.26 TCGA-66-2782-01 1 28800273 28800274 - A PHACTR4 Frame_Shift_Ins p.L357Tfs*18 0.29 TCGA-66-2782-01 1 35484984 35484984 G A ZMYM6 Missense_Mutation p.P133L 0.24 tolerated(0.48) benign(0.032) TCGA-66-2782-01 1 39818705 39818705 G C MACF1 Missense_Mutation p.E1680D 0.10 benign(0.261) TCGA-66-2782-01 1 54610287 54610287 C A CDCP2 Silent p.G93G 0.22 TCGA-66-2782-01 1 54610288 54610288 C T CDCP2 Missense_Mutation p.G93E 0.21 deleterious(0) probably_damaging(1) TCGA-66-2782-01 1 61553950 61553950 G C NFIA Missense_Mutation p.E98Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-66-2782-01 1 6314831 6314831 C G GPR153 Silent p.L45L 0.13 TCGA-66-2782-01 1 6680213 6680213 C T PHF13 Silent p.P164P 0.11 TCGA-66-2782-01 1 68152230 68152230 G T GADD45A Missense_Mutation p.G115V 0.20 deleterious(0.03) benign(0.143) TCGA-66-2782-01 1 74836175 74836175 G T FPGT-TNNI3K Intron 0.22 TCGA-66-2782-01 1 75038770 75038770 G T C1orf173 Missense_Mutation p.A875D 0.28 tolerated(0.12) benign(0.122) TCGA-66-2782-01 1 78194184 78194184 C G USP33 Missense_Mutation p.D342H 0.14 deleterious(0.03) possibly_damaging(0.89) TCGA-66-2782-01 1 79387408 79387408 T A ELTD1 Missense_Mutation p.S383C 0.17 tolerated(0.1) possibly_damaging(0.676) TCGA-66-2782-01 1 9086385 9086385 C T SLC2A7 Missense_Mutation p.G7E 0.23 tolerated(0.15) benign(0.003) TCGA-66-2782-01 20 14665530 14665530 G T MACROD2 Missense_Mutation p.A115S 0.20 tolerated(0.37) benign(0.082) TCGA-66-2782-01 20 2384303 2384303 C A TGM6 Missense_Mutation p.F390L 0.34 deleterious(0) possibly_damaging(0.86) TCGA-66-2782-01 20 33328762 33328762 C T NCOA6 Silent p.L1766L 0.17 TCGA-66-2782-01 20 33370155 33370155 C T NCOA6 Missense_Mutation p.V2I 0.27 possibly_damaging(0.791) TCGA-66-2782-01 20 37536831 37536831 G T PPP1R16B Missense_Mutation p.D397Y 0.29 tolerated(0.12) possibly_damaging(0.569) TCGA-66-2782-01 20 43703848 43703848 A C STK4 3'UTR 0.20 TCGA-66-2782-01 20 47266097 47266097 A T PREX1 Missense_Mutation p.S1016T 0.15 tolerated(0.22) benign(0.22) TCGA-66-2782-01 20 57042215 57042215 C T APCDD1L Missense_Mutation p.E230K 0.26 deleterious(0.04) benign(0.204) TCGA-66-2782-01 21 22656553 22656553 A T NCAM2 Missense_Mutation p.Q57L 0.25 tolerated(0.06) benign(0.083) TCGA-66-2782-01 21 34399115 34399115 G C OLIG2 5'UTR 0.19 TCGA-66-2782-01 21 42837984 42837984 C T TMPRSS2 3'UTR 0.19 TCGA-66-2782-01 21 46086302 46086302 C A KRTAP12-2 3'UTR 0.27 TCGA-66-2782-01 21 46086303 46086303 C A KRTAP12-2 3'UTR 0.27 TCGA-66-2782-01 21 47777037 47777037 A T PCNT Silent p.L695L 0.37 TCGA-66-2782-01 22 23917219 23917219 C A IGLL1 Missense_Mutation p.G86V 0.10 deleterious_low_confidence(0) benign(0.028) TCGA-66-2782-01 22 26164642 26164642 G C MYO18B Silent p.L253L 0.17 TCGA-66-2782-01 22 32205622 32205622 G T DEPDC5 Missense_Mutation p.G438V 0.18 tolerated(0.2) benign(0.131) TCGA-66-2782-01 22 32482219 32482219 G T SLC5A1 Missense_Mutation p.C345F 0.23 deleterious(0.01) probably_damaging(0.942) TCGA-66-2782-01 22 38039103 38039103 A T SH3BP1 Splice_Site p.X133_splice 0.33 TCGA-66-2782-01 2 109429163 109429163 A T CCDC138 Missense_Mutation p.Q311L 0.22 deleterious(0.04) benign(0.145) TCGA-66-2782-01 2 112621316 112621316 G A ANAPC1 Missense_Mutation p.R330C 0.10 tolerated(0.08) possibly_damaging(0.871) TCGA-66-2782-01 2 11772040 11772040 T A GREB1 Missense_Mutation p.H1539Q 0.26 tolerated(0.45) benign(0.003) TCGA-66-2782-01 2 120776748 120776748 G A EPB41L5 Missense_Mutation p.A30T 0.15 tolerated(0.51) benign(0.009) TCGA-66-2782-01 2 121747649 121747649 C G GLI2 Missense_Mutation p.R1387G 0.16 deleterious_low_confidence(0.04) benign(0.32) TCGA-66-2782-01 2 141110527 141110527 G T LRP1B Missense_Mutation p.A3882E 0.11 possibly_damaging(0.587) TCGA-66-2782-01 2 141460034 141460034 C T LRP1B Missense_Mutation p.G2038R 0.12 probably_damaging(0.988) TCGA-66-2782-01 2 141773277 141773277 C T LRP1B Silent p.G726G 0.10 TCGA-66-2782-01 2 163133387 163133387 C A IFIH1 Missense_Mutation p.R705I 0.29 deleterious(0) probably_damaging(0.993) TCGA-66-2782-01 2 168100713 168100713 T C XIRP2 Silent p.L937L 0.13 TCGA-66-2782-01 2 170042302 170042302 G T LRP2 Missense_Mutation p.P3186T 0.16 probably_damaging(0.938) TCGA-66-2782-01 2 172822353 172822353 C T HAT1 Nonsense_Mutation p.Q179* 0.28 TCGA-66-2782-01 2 179447406 179447406 A G TTN Intron 0.32 TCGA-66-2782-01 2 186672112 186672112 A G FSIP2 Missense_Mutation p.T6116A 0.25 benign(0.321) TCGA-66-2782-01 2 191905825 191905825 T G STAT4 Missense_Mutation p.Q434P 0.15 tolerated(0.11) probably_damaging(0.951) TCGA-66-2782-01 2 196599863 196599863 G C SLC39A10 3'UTR 0.16 TCGA-66-2782-01 2 196681578 196681578 C A DNAH7 Missense_Mutation p.A3179S 0.15 tolerated(1) benign(0.315) TCGA-66-2782-01 2 197184089 197184089 C T HECW2 Missense_Mutation p.E509K 0.12 tolerated_low_confidence(0.46) benign(0.01) TCGA-66-2782-01 2 201371747 201371747 C A KCTD18 5'UTR 0.12 TCGA-66-2782-01 2 206165365 206165365 G A PARD3B Missense_Mutation p.R704K 0.33 deleterious(0) probably_damaging(0.998) TCGA-66-2782-01 2 207436469 207436469 T C ADAM23 Missense_Mutation p.C529R 0.22 deleterious(0) probably_damaging(1) TCGA-66-2782-01 2 219754802 219754802 G T WNT10A Missense_Mutation p.G158V 0.12 deleterious(0.02) possibly_damaging(0.691) TCGA-66-2782-01 2 220355204 220355204 T C SPEG Missense_Mutation p.Y2999H 0.29 probably_damaging(0.999) TCGA-66-2782-01 2 231112683 231112683 A G SP140 Silent p.P265P 0.10 TCGA-66-2782-01 2 233899526 233899526 C G NEU2 Missense_Mutation p.S301C 0.29 deleterious(0.05) benign(0.012) TCGA-66-2782-01 2 234449396 234449396 G C USP40 Missense_Mutation p.P372R 0.10 tolerated(0.09) benign(0.361) TCGA-66-2782-01 2 26597907 26597907 G T EPT1 Splice_Site p.X192_splice 0.24 TCGA-66-2782-01 2 27306531 27306531 G C EMILIN1 Missense_Mutation p.E698Q 0.17 probably_damaging(0.982) TCGA-66-2782-01 2 27426157 27426157 C A SLC5A6 Missense_Mutation p.R384L 0.18 deleterious(0.04) benign(0.092) TCGA-66-2782-01 2 27600793 27600793 G - ZNF513 Frame_Shift_Del p.Y416Tfs*42 0.22 TCGA-66-2782-01 2 3727499 3727499 C A ALLC Silent p.V71V 0.20 TCGA-66-2782-01 2 40656907 40656907 C G SLC8A1 Missense_Mutation p.V172L 0.09 deleterious(0) probably_damaging(1) TCGA-66-2782-01 2 60773218 60773218 C T BCL11A Silent p.E91E 0.09 TCGA-66-2782-01 2 68873182 68873182 G A PROKR1 Missense_Mutation p.G77S 0.24 deleterious(0) probably_damaging(0.994) TCGA-66-2782-01 2 73678659 73678659 G T ALMS1 Missense_Mutation p.G1668W 0.21 probably_damaging(0.965) TCGA-66-2782-01 2 74907075 74907075 G T SEMA4F Missense_Mutation p.Q684H 0.23 deleterious(0.02) possibly_damaging(0.836) TCGA-66-2782-01 2 74907083 74907083 G C SEMA4F Missense_Mutation p.R687P 0.23 deleterious(0.01) possibly_damaging(0.721) TCGA-66-2782-01 2 79349975 79349975 C A REG1A Silent p.R110R 0.22 TCGA-66-2782-01 2 80136755 80136755 G T CTNNA2 Missense_Mutation p.E296D 0.18 tolerated(0.08) probably_damaging(0.968) TCGA-66-2782-01 2 84518254 84518254 C A FUNDC2P2 RNA 0.32 TCGA-66-2782-01 2 86254425 86254425 C T POLR1A 3'UTR 0.23 TCGA-66-2782-01 2 88874543 88874543 C T EIF2AK3 Missense_Mutation p.E820K 0.10 tolerated(0.25) benign(0.022) TCGA-66-2782-01 2 95947943 95947943 A G PROM2 Missense_Mutation p.Y566C 0.18 deleterious(0) probably_damaging(0.989) TCGA-66-2782-01 3 107097446 107097446 C A CCDC54 3'UTR 0.19 TCGA-66-2782-01 3 108147662 108147662 C T MYH15 Missense_Mutation p.E1147K 0.23 tolerated(0.08) benign(0.318) TCGA-66-2782-01 3 108572722 108572722 T C TRAT1 Nonstop_Mutation p.*187Qext*8 0.23 TCGA-66-2782-01 3 109023503 109023503 C G DPPA2 Missense_Mutation p.V225L 0.10 deleterious(0.01) benign(0.211) TCGA-66-2782-01 3 113524309 113524309 A G ATP6V1A Silent p.T566T 0.28 TCGA-66-2782-01 3 118865717 118865717 C A C3orf30 Missense_Mutation p.D227E 0.26 tolerated(0.05) probably_damaging(0.971) TCGA-66-2782-01 3 122628901 122628901 G A SEMA5B 3'UTR 0.28 TCGA-66-2782-01 3 126749164 126749164 G A PLXNA1 Missense_Mutation p.A1714T 0.13 deleterious(0.01) possibly_damaging(0.513) TCGA-66-2782-01 3 129247867 129247867 C A RHO Silent p.T97T 0.21 TCGA-66-2782-01 3 130290018 130290018 G A COL6A6 Missense_Mutation p.D920N 0.20 deleterious(0) probably_damaging(1) TCGA-66-2782-01 3 138669104 138669104 C T C3orf72 Intron 0.20 TCGA-66-2782-01 3 138738890 138738890 C A PRR23B Missense_Mutation p.S205I 0.10 deleterious(0) probably_damaging(0.996) TCGA-66-2782-01 3 170784011 170784011 G C TNIK Missense_Mutation p.Q1322E 0.10 deleterious(0) probably_damaging(0.973) TCGA-66-2782-01 3 182733285 182733285 T C MCCC1 Missense_Mutation p.R707G 0.19 tolerated(0.43) probably_damaging(0.955) TCGA-66-2782-01 3 35835264 35835264 G T ARPP21 Missense_Mutation p.Q752H 0.25 deleterious(0) probably_damaging(0.997) TCGA-66-2782-01 3 52662986 52662986 A G PBRM1 Missense_Mutation p.F456S 0.29 deleterious(0) probably_damaging(0.924) TCGA-66-2782-01 3 57107973 57107973 G C SPATA12 Missense_Mutation p.R84T 0.11 tolerated_low_confidence(0.1) benign(0.402) TCGA-66-2782-01 4 1019001 1019001 G T FGFRL1 Missense_Mutation p.G461C 0.35 deleterious(0.02) possibly_damaging(0.592) TCGA-66-2782-01 4 114120187 114120187 C G ANK2 Missense_Mutation p.H102Q 0.20 probably_damaging(0.999) TCGA-66-2782-01 4 115858639 115858639 G C NDST4 Missense_Mutation p.N414K 0.25 tolerated(0.09) benign(0.016) TCGA-66-2782-01 4 120107146 120107146 G T MYOZ2 Nonsense_Mutation p.E196* 0.27 TCGA-66-2782-01 4 122068292 122068292 G A TNIP3 Missense_Mutation p.S293L 0.11 tolerated(0.07) benign(0.035) TCGA-66-2782-01 4 126240599 126240599 G T FAT4 Silent p.V1011V 0.22 TCGA-66-2782-01 4 134072210 134072210 G T PCDH10 Silent p.P305P 0.23 TCGA-66-2782-01 4 134084205 134084205 T C PCDH10 Silent p.S957S 0.18 TCGA-66-2782-01 4 155488788 155488788 G T FGB Missense_Mutation p.K178N 0.14 tolerated(0.28) benign(0.001) TCGA-66-2782-01 4 158284166 158284166 C T GRIA2 Silent p.N874N 0.20 TCGA-66-2782-01 4 164050477 164050477 G C NAF1 Missense_Mutation p.Q353E 0.12 tolerated(0.05) benign(0.011) TCGA-66-2782-01 4 169197313 169197313 T A DDX60 Missense_Mutation p.L666F 0.20 tolerated(0.13) benign(0.049) TCGA-66-2782-01 4 176733424 176733424 G - GPM6A Intron 0.36 TCGA-66-2782-01 4 39274621 39274621 C G WDR19 Missense_Mutation p.H1169D 0.19 deleterious(0) probably_damaging(0.933) TCGA-66-2782-01 4 42895560 42895560 G C GRXCR1 Missense_Mutation p.G93R 0.15 tolerated(0.11) benign(0.007) TCGA-66-2782-01 4 4419139 4419139 G A NSG1 Missense_Mutation p.E179K 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-66-2782-01 4 68704024 68704024 G T TMPRSS11D Missense_Mutation p.A114E 0.22 deleterious(0) probably_damaging(0.997) TCGA-66-2782-01 4 74846927 74846927 C G PF4 Missense_Mutation p.E100D 0.13 tolerated(0.5) benign(0.005) TCGA-66-2782-01 4 77305543 77305543 C A CCDC158 Missense_Mutation p.D142Y 0.18 deleterious(0) possibly_damaging(0.79) TCGA-66-2782-01 4 77305544 77305544 C T CCDC158 Silent p.E141E 0.18 TCGA-66-2782-01 4 83839905 83839905 G C THAP9 Missense_Mutation p.R847T 0.09 deleterious(0.02) probably_damaging(0.915) TCGA-66-2782-01 4 85638146 85638146 C G WDFY3 Missense_Mutation p.R2593T 0.19 tolerated(0.4) benign(0.003) TCGA-66-2782-01 4 89400577 89400577 C A HERC5 Nonsense_Mutation p.C552* 0.23 TCGA-66-2782-01 4 89427028 89427028 G T HERC5 Nonstop_Mutation p.*1025Lext*30 0.20 TCGA-66-2782-01 4 941927 941927 G T TMEM175 Missense_Mutation p.E59D 0.08 deleterious(0.03) benign(0.17) TCGA-66-2782-01 4 94690534 94690534 C G GRID2 Missense_Mutation p.S845C 0.07 deleterious(0) probably_damaging(0.96) TCGA-66-2782-01 5 108207797 108207797 A T FER Silent p.T269T 0.28 TCGA-66-2782-01 5 11397307 11397307 G T CTNND2 Missense_Mutation p.L150M 0.23 tolerated(0.11) possibly_damaging(0.635) TCGA-66-2782-01 5 131630526 131630526 G T SLC22A4 Missense_Mutation p.D73Y 0.33 deleterious(0) possibly_damaging(0.67) TCGA-66-2782-01 5 137222564 137222564 A G MYOT Missense_Mutation p.D401G 0.23 deleterious(0) probably_damaging(0.996) TCGA-66-2782-01 5 140590583 140590583 C T PCDHB12 Missense_Mutation p.L702F 0.29 deleterious_low_confidence(0.01) benign(0.228) TCGA-66-2782-01 5 140723766 140723766 C A PCDHGA3 Missense_Mutation p.P56T 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.46) TCGA-66-2782-01 5 140723767 140723767 C A PCDHGA3 Missense_Mutation p.P56H 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.604) TCGA-66-2782-01 5 147889143 147889143 A G HTR4 Missense_Mutation p.S318P 0.07 deleterious(0.02) possibly_damaging(0.836) TCGA-66-2782-01 5 148411217 148411217 C G SH3TC2 Missense_Mutation p.E345D 0.31 deleterious(0) probably_damaging(0.999) TCGA-66-2782-01 5 14871536 14871536 G C ANKH Silent p.L7L 0.15 TCGA-66-2782-01 5 150310583 150310583 T C ZNF300P1 RNA 0.35 TCGA-66-2782-01 5 16758264 16758264 C T MYO10 Missense_Mutation p.S604N 0.27 deleterious(0.03) probably_damaging(0.992) TCGA-66-2782-01 5 169138961 169138961 T A DOCK2 Missense_Mutation p.M502K 0.39 deleterious(0.01) possibly_damaging(0.484) TCGA-66-2782-01 5 176721115 176721115 A T NSD1 Missense_Mutation p.K2249I 0.38 deleterious_low_confidence(0.01) benign(0.11) TCGA-66-2782-01 5 180482998 180482998 G T BTNL9 Missense_Mutation p.R313L 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-66-2782-01 5 256630 256630 G T SDHA 3'UTR 0.14 TCGA-66-2782-01 5 26915968 26915968 C A CDH9 Missense_Mutation p.G98V 0.19 deleterious(0) probably_damaging(1) TCGA-66-2782-01 5 26915969 26915969 C G CDH9 Missense_Mutation p.G98R 0.19 deleterious(0) probably_damaging(1) TCGA-66-2782-01 5 33937066 33937066 C T RXFP3 Missense_Mutation p.A74V 0.13 tolerated(0.18) benign(0.087) TCGA-66-2782-01 5 34818921 34818921 G A RAI14 Missense_Mutation p.R323Q 0.12 tolerated(0.67) benign(0.002) TCGA-66-2782-01 5 41065440 41065440 G T MROH2B Silent p.T118T 0.20 TCGA-66-2782-01 5 41160380 41160380 G A C6 Silent p.A516A 0.27 TCGA-66-2782-01 5 5200358 5200358 G A ADAMTS16 Missense_Mutation p.R476H 0.22 deleterious(0) probably_damaging(0.997) TCGA-66-2782-01 5 63256368 63256368 A T HTR1A Silent p.S393S 0.09 TCGA-66-2782-01 5 68419159 68419159 C A SLC30A5 Silent p.L635L 0.12 TCGA-66-2782-01 5 71495683 71495683 A G MAP1B Silent p.E2167E 0.22 TCGA-66-2782-01 5 74696088 74696088 G A COL4A3BP Missense_Mutation p.T479I 0.27 tolerated(0.18) benign(0.033) TCGA-66-2782-01 5 78076486 78076486 C A ARSB Splice_Site p.X446_splice 0.41 TCGA-66-2782-01 5 78952809 78952809 C G PAPD4 Silent p.L352L 0.15 TCGA-66-2782-01 5 90024634 90024634 G T GPR98 Missense_Mutation p.W3437L 0.43 possibly_damaging(0.876) TCGA-66-2782-01 6 107361404 107361404 T G C6orf203 Missense_Mutation p.V152G 0.13 deleterious(0) possibly_damaging(0.533) TCGA-66-2782-01 6 110644054 110644054 G T METTL24 Missense_Mutation p.L114I 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-66-2782-01 6 112671478 112671478 C G RFPL4B Missense_Mutation p.H190D 0.19 tolerated(0.12) benign(0.381) TCGA-66-2782-01 6 117245953 117245953 A G RFX6 Silent p.S559S 0.15 TCGA-66-2782-01 6 12124417 12124417 A G HIVEP1 Silent p.P1463P 0.21 TCGA-66-2782-01 6 12718981 12718981 A G PHACTR1 Missense_Mutation p.D2G 0.15 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-66-2782-01 6 131973776 131973776 T C ENPP3 Silent p.D124D 0.18 TCGA-66-2782-01 6 145948803 145948803 C A EPM2A Missense_Mutation p.V249L 0.21 tolerated(0.08) possibly_damaging(0.613) TCGA-66-2782-01 6 146755509 146755509 C A GRM1 Silent p.G1054G 0.20 TCGA-66-2782-01 6 146870741 146870741 C T RAB32 Missense_Mutation p.P131L 0.17 deleterious(0.02) benign(0.078) TCGA-66-2782-01 6 160875476 160875476 A T SLC22A3 3'Flank 0.33 TCGA-66-2782-01 6 160998304 160998304 C A LPA Missense_Mutation p.V1499F 0.12 tolerated(0.68) probably_damaging(0.96) TCGA-66-2782-01 6 161139397 161139397 G C PLG Missense_Mutation p.V287L 0.16 tolerated(0.14) benign(0.007) TCGA-66-2782-01 6 167721276 167721276 C - UNC93A Frame_Shift_Del p.H330Tfs*5 0.18 TCGA-66-2782-01 6 24145808 24145808 C A NRSN1 Silent p.I74I 0.11 TCGA-66-2782-01 6 24145809 24145809 C A NRSN1 Missense_Mutation p.L75I 0.10 tolerated(0.76) benign(0.002) TCGA-66-2782-01 6 27215710 27215710 C A PRSS16 Missense_Mutation p.S40R 0.14 tolerated(0.21) benign(0.004) TCGA-66-2782-01 6 28056825 28056825 G T ZNF165 Missense_Mutation p.Q345H 0.10 deleterious(0.01) benign(0.188) TCGA-66-2782-01 6 28294523 28294523 G C ZSCAN31 Missense_Mutation p.S214C 0.18 tolerated(0.1) benign(0.004) TCGA-66-2782-01 6 28295160 28295160 C A ZSCAN31 Missense_Mutation p.D178Y 0.13 deleterious(0.01) possibly_damaging(0.615) TCGA-66-2782-01 6 29395345 29395345 A G OR11A1 Missense_Mutation p.L25P 0.14 deleterious(0.01) possibly_damaging(0.488) TCGA-66-2782-01 6 33179559 33179559 C G RING1 Missense_Mutation p.A300G 0.13 deleterious(0) unknown(0) TCGA-66-2782-01 6 34008084 34008084 T A GRM4 Silent p.A459A 0.11 TCGA-66-2782-01 6 54806713 54806713 A G FAM83B Missense_Mutation p.N982D 0.09 deleterious(0.02) benign(0.424) TCGA-66-2782-01 6 75843650 75843650 C A COL12A1 Missense_Mutation p.R1863L 0.11 probably_damaging(0.999) TCGA-66-2782-01 6 84896160 84896160 T - KIAA1009 Frame_Shift_Del p.T431Lfs*3 0.17 TCGA-66-2782-01 6 87724992 87724992 T C HTR1E 5'UTR 0.16 TCGA-66-2782-01 6 88255364 88255364 T A RARS2 Missense_Mutation p.N169Y 0.19 deleterious(0) probably_damaging(1) TCGA-66-2782-01 6 88853517 88853517 T A CNR1 3'UTR 0.20 TCGA-66-2782-01 6 9900680 9900680 C T OFCC1 Intron 0.09 TCGA-66-2782-01 7 105658488 105658488 C T CDHR3 Silent p.A541A 0.21 TCGA-66-2782-01 7 106509389 106509389 C G PIK3CG Silent p.L461L 0.26 TCGA-66-2782-01 7 113558590 113558590 C A PPP1R3A Missense_Mutation p.E154D 0.19 deleterious(0.01) possibly_damaging(0.714) TCGA-66-2782-01 7 130295841 130295841 T C COPG2 Silent p.L240L 0.28 TCGA-66-2782-01 7 142111566 142111566 G T TRBV5-7 Missense_Mutation p.A57D 0.16 deleterious(0.03) benign(0.038) TCGA-66-2782-01 7 143453821 143453821 G A CTAGE6 Silent p.L311L 0.22 TCGA-66-2782-01 7 143792422 143792422 G A OR2A12 Silent p.S74S 0.31 TCGA-66-2782-01 7 147926793 147926793 C T CNTNAP2 Silent p.D1101D 0.29 TCGA-66-2782-01 7 148506222 148506222 C T EZH2 Silent p.R712R 0.05 TCGA-66-2782-01 7 150556093 150556093 C A AOC1 Missense_Mutation p.L605M 0.33 tolerated(0.06) possibly_damaging(0.662) TCGA-66-2782-01 7 153584751 153584751 G T DPP6 5'UTR 0.17 TCGA-66-2782-01 7 154379700 154379700 A T DPP6 Intron 0.34 TCGA-66-2782-01 7 20198137 20198137 A G MACC1 Missense_Mutation p.V616A 0.24 deleterious(0) probably_damaging(0.99) TCGA-66-2782-01 7 27282757 27282757 G T EVX1 Silent p.P36P 0.38 TCGA-66-2782-01 7 31125012 31125012 G T ADCYAP1R1 Missense_Mutation p.W208C 0.23 tolerated(0.19) probably_damaging(0.928) TCGA-66-2782-01 7 31682967 31682967 A G CCDC129 Silent p.E687E 0.21 TCGA-66-2782-01 7 34851423 34851423 C T NPSR1 Silent p.L142L 0.10 TCGA-66-2782-01 7 48349667 48349667 C G ABCA13 Missense_Mutation p.P3149A 0.20 possibly_damaging(0.908) TCGA-66-2782-01 7 48349668 48349668 C A ABCA13 Missense_Mutation p.P3149Q 0.20 probably_damaging(0.965) TCGA-66-2782-01 7 48450198 48450198 G T ABCA13 Missense_Mutation p.R4051M 0.25 possibly_damaging(0.646) TCGA-66-2782-01 7 50121367 50121367 T A ZPBP Intron 0.15 TCGA-66-2782-01 7 63796665 63796665 T G ZNF736 Missense_Mutation p.V11G 0.30 deleterious(0) possibly_damaging(0.583) TCGA-66-2782-01 7 64438970 64438970 G A ZNF117 Missense_Mutation p.H327Y 0.12 deleterious(0.02) benign(0.141) TCGA-66-2782-01 7 66483032 66483032 C T TYW1 Missense_Mutation p.H255Y 0.19 tolerated(0.13) benign(0.071) TCGA-66-2782-01 7 75401323 75401323 T A CCL26 Splice_Site p.X25_splice 0.27 TCGA-66-2782-01 7 78150907 78150907 A G MAGI2 Silent p.N198N 0.26 TCGA-66-2782-01 7 8125922 8125922 A T GLCCI1 Silent p.L466L 0.22 TCGA-66-2782-01 7 88962778 88962778 G T ZNF804B Missense_Mutation p.C161F 0.28 tolerated(0.37) benign(0.063) TCGA-66-2782-01 7 90042515 90042515 G T CLDN12 Silent p.V175V 0.24 TCGA-66-2782-01 7 94056332 94056332 G A COL1A2 Missense_Mutation p.D1040N 0.08 unknown(0) TCGA-66-2782-01 8 100866426 100866426 G A VPS13B Silent p.A3628A 0.09 TCGA-66-2782-01 8 105161076 105161076 G T RIMS2 Intron 0.09 TCGA-66-2782-01 8 106814808 106814808 G T ZFPM2 Missense_Mutation p.S833I 0.10 deleterious(0) probably_damaging(0.997) TCGA-66-2782-01 8 110401328 110401328 A T PKHD1L1 Missense_Mutation p.H215L 0.47 tolerated(0.2) benign(0.307) TCGA-66-2782-01 8 124658216 124658216 T C KLHL38 Silent p.K503K 0.13 TCGA-66-2782-01 8 133044300 133044300 C A OC90 Splice_Site p.X287_splice 0.09 TCGA-66-2782-01 8 139144774 139144774 G T FAM135B 3'UTR 0.20 TCGA-66-2782-01 8 16026285 16026285 G T MSR1 Missense_Mutation p.S104R 0.30 tolerated(0.32) benign(0.021) TCGA-66-2782-01 8 62212824 62212824 C G CLVS1 Silent p.A146A 0.28 TCGA-66-2782-01 8 68931877 68931877 C T PREX2 Nonsense_Mutation p.Q103* 0.16 TCGA-66-2782-01 8 70964211 70964211 G T PRDM14 3'UTR 0.38 TCGA-66-2782-01 8 77765850 77765850 G A ZFHX4 Silent p.T2231T 0.18 TCGA-66-2782-01 8 97243321 97243321 G A UQCRB 3'UTR 0.44 TCGA-66-2782-01 9 107367467 107367467 A T OR13C2 Missense_Mutation p.S148T 0.37 tolerated(0.07) benign(0.036) TCGA-66-2782-01 9 136298499 136298499 G T ADAMTS13 Missense_Mutation p.W365L 0.20 deleterious(0) probably_damaging(0.937) TCGA-66-2782-01 9 139311537 139311537 G A PMPCA Silent p.V256V 0.27 TCGA-66-2782-01 9 84547696 84547696 G T RP11-383M4.6 Intron 0.39 TCGA-66-2782-01 9 90498077 90498077 C A SPATA31E1 Missense_Mutation p.P91T 0.25 tolerated(0.46) benign(0.043) TCGA-66-2782-01 X 110644366 110644366 C A DCX Missense_Mutation p.R267L 0.52 deleterious(0) probably_damaging(0.936) TCGA-66-2782-01 X 11786713 11786713 C A MSL3 Nonsense_Mutation p.S398* 0.32 TCGA-66-2782-01 X 130220021 130220027 TGTGGTC - ARHGAP36 Frame_Shift_Del p.V415Pfs*2 0.40 TCGA-66-2782-01 X 135430658 135430658 G T GPR112 Missense_Mutation p.R1598M 0.42 deleterious(0.05) benign(0.014) TCGA-66-2782-01 X 140994850 140994850 C A MAGEC1 Missense_Mutation p.Q554K 0.46 deleterious_low_confidence(0) benign(0.042) TCGA-66-2782-01 X 142596756 142596756 C A SPANXN3 Missense_Mutation p.C105F 0.47 tolerated_low_confidence(0.82) benign(0.006) TCGA-66-2782-01 X 149613735 149613735 G A MAMLD1 5'UTR 0.52 TCGA-66-2782-01 X 18323182 18323182 C G SCML2 Missense_Mutation p.D214H 0.27 deleterious(0) probably_damaging(0.97) TCGA-66-2782-01 X 34962134 34962134 C A FAM47B Missense_Mutation p.H396N 0.29 tolerated(0.09) possibly_damaging(0.829) TCGA-66-2782-01 X 54049215 54049215 C A PHF8 Nonsense_Mutation p.E90* 0.41 TCGA-66-2782-01 X 54949443 54949443 G T TRO Nonsense_Mutation p.E160* 0.35 TCGA-66-2782-01 X 7223133 7223133 C T STS Silent p.T335T 0.34 TCGA-66-2782-01 X 75649297 75649297 G T MAGEE1 Missense_Mutation p.G325V 0.44 tolerated_low_confidence(0.15) benign(0.112) TCGA-66-2782-01 X 91133883 91133883 C A PCDH11X Missense_Mutation p.L882M 0.44 tolerated(0.07) probably_damaging(0.993) TCGA-66-2783-01 10 106907400 106907400 A G SORCS3 Missense_Mutation p.E443G 0.28 tolerated(0.05) benign(0.118) TCGA-66-2783-01 10 106976840 106976840 C A SORCS3 Missense_Mutation p.N898K 0.28 tolerated(0.26) benign(0.102) TCGA-66-2783-01 10 15688891 15688891 A G ITGA8 Silent p.G387G 0.27 TCGA-66-2783-01 10 28274056 28274056 T A ARMC4 Missense_Mutation p.K156I 0.29 deleterious(0) possibly_damaging(0.482) TCGA-66-2783-01 10 3147652 3147652 G C PFKP Missense_Mutation p.E245Q 0.25 tolerated(0.11) benign(0.082) TCGA-66-2783-01 10 43316087 43316087 G A BMS1 Silent p.R967R 0.22 TCGA-66-2783-01 10 46999128 46999128 G C GPRIN2 Missense_Mutation p.R83P 0.10 tolerated(0.05) benign(0.007) TCGA-66-2783-01 10 50946033 50946033 T A OGDHL Missense_Mutation p.H826L 0.27 deleterious(0) probably_damaging(0.967) TCGA-66-2783-01 10 68686213 68686213 G T LRRTM3 5'UTR 0.29 TCGA-66-2783-01 10 70166642 70166642 G A RUFY2 5'UTR 0.36 TCGA-66-2783-01 10 75113480 75113480 A G TTC18 Silent p.T28T 0.20 TCGA-66-2783-01 10 8100379 8100379 C T GATA3 Missense_Mutation p.S118F 0.17 deleterious(0.01) possibly_damaging(0.575) TCGA-66-2783-01 10 89717708 89717708 C T PTEN Nonsense_Mutation p.Q245* 0.37 TCGA-66-2783-01 11 105962125 105962125 T G AASDHPPT Nonsense_Mutation p.L205* 0.22 TCGA-66-2783-01 11 124253009 124253009 G T OR8B2 Missense_Mutation p.F77L 0.21 tolerated_low_confidence(0.06) benign(0.329) TCGA-66-2783-01 11 134038017 134038017 G A NCAPD3 Silent p.L1149L 0.27 TCGA-66-2783-01 11 15260621 15260621 G C INSC Splice_Site p.X512_splice 0.22 TCGA-66-2783-01 11 18500549 18500549 C A LDHAL6A 3'UTR 0.24 TCGA-66-2783-01 11 2167571 2167571 C T INS-IGF2 3'Flank 0.31 TCGA-66-2783-01 11 3423071 3423071 C A TSSC2 RNA 0.29 TCGA-66-2783-01 11 43423094 43423094 G A TTC17 Missense_Mutation p.V440M 0.21 tolerated(0.11) possibly_damaging(0.778) TCGA-66-2783-01 11 44081505 44081505 C T ACCSL 3'UTR 0.26 TCGA-66-2783-01 11 44255735 44255735 G T EXT2 Missense_Mutation p.C659F 0.21 deleterious(0) probably_damaging(1) TCGA-66-2783-01 11 47857309 47857309 T A NUP160 Missense_Mutation p.K332I 0.32 deleterious(0.01) possibly_damaging(0.827) TCGA-66-2783-01 11 48511193 48511193 A T OR4A47 Missense_Mutation p.L283F 0.26 tolerated_low_confidence(0.09) benign(0.071) TCGA-66-2783-01 11 55433289 55433289 A T OR4C6 Missense_Mutation p.Y216F 0.27 deleterious_low_confidence(0.01) benign(0.335) TCGA-66-2783-01 11 55927467 55927467 G T OR8K5 Silent p.I109I 0.26 TCGA-66-2783-01 11 5841948 5841948 T C OR52N2 Missense_Mutation p.I128T 0.30 deleterious(0) probably_damaging(0.918) TCGA-66-2783-01 11 58711127 58711127 C T GLYATL1 Silent p.L46L 0.28 TCGA-66-2783-01 11 59860957 59860957 A T MS4A2 Missense_Mutation p.S155C 0.27 deleterious(0) benign(0.259) TCGA-66-2783-01 11 62290332 62290332 C T AHNAK Missense_Mutation p.E3853K 0.31 benign(0.167) TCGA-66-2783-01 11 68337285 68337285 C T PPP6R3 Missense_Mutation p.L400F 0.27 deleterious(0.01) possibly_damaging(0.872) TCGA-66-2783-01 11 6964374 6964374 G T ZNF215 Missense_Mutation p.D182Y 0.24 deleterious(0.02) benign(0.056) TCGA-66-2783-01 11 77936216 77936216 G C GAB2 Missense_Mutation p.R414G 0.16 tolerated(0.28) benign(0.004) TCGA-66-2783-01 11 93494771 93494771 G A C11orf54 Missense_Mutation p.E239K 0.05 deleterious(0.04) benign(0.069) TCGA-66-2783-01 11 93822054 93822054 C A HEPHL1 Silent p.A738A 0.25 TCGA-66-2783-01 12 101005805 101005805 A T GAS2L3 Nonsense_Mutation p.K111* 0.24 TCGA-66-2783-01 12 12483728 12483728 C T MANSC1 Missense_Mutation p.G177R 0.26 deleterious(0.04) possibly_damaging(0.769) TCGA-66-2783-01 12 13128070 13128070 G C HEBP1 3'UTR 0.25 TCGA-66-2783-01 12 133372541 133372541 T G GOLGA3 Missense_Mutation p.K789T 0.27 deleterious(0) benign(0.287) TCGA-66-2783-01 12 2774864 2774864 C T CACNA1C Missense_Mutation p.P1554S 0.20 deleterious(0) probably_damaging(0.995) TCGA-66-2783-01 12 2788854 2788854 C A CACNA1C Missense_Mutation p.P1827H 0.46 tolerated_low_confidence(0.06) benign(0.002) TCGA-66-2783-01 12 48458880 48458880 C G SENP1 Missense_Mutation p.D415H 0.19 deleterious(0.02) benign(0.422) TCGA-66-2783-01 12 4920492 4920492 T A KCNA6 Missense_Mutation p.Y429N 0.28 tolerated(0.28) possibly_damaging(0.499) TCGA-66-2783-01 12 49948271 49948271 G T KCNH3 Silent p.P690P 0.24 TCGA-66-2783-01 12 52450868 52450868 G - NR4A1 Frame_Shift_Del p.K410Rfs*139 0.28 TCGA-66-2783-01 12 55421134 55421134 G A NEUROD4 Missense_Mutation p.R304H 0.26 deleterious(0.01) benign(0.013) TCGA-66-2783-01 12 62147478 62147478 C A FAM19A2 Missense_Mutation p.E103D 0.16 tolerated(0.61) benign(0.02) TCGA-66-2783-01 12 62986587 62986587 G A MON2 3'UTR 0.25 TCGA-66-2783-01 12 70004126 70004126 G A LRRC10 Missense_Mutation p.R165C 0.24 tolerated(0.15) benign(0.001) TCGA-66-2783-01 12 78511952 78511952 C A NAV3 Missense_Mutation p.P972H 0.20 tolerated(0.07) benign(0.223) TCGA-66-2783-01 12 79747301 79747301 T C SYT1 Missense_Mutation p.I277T 0.26 deleterious(0) possibly_damaging(0.888) TCGA-66-2783-01 12 95907432 95907432 C T METAP2 Missense_Mutation p.P397S 0.24 tolerated(0.2) possibly_damaging(0.59) TCGA-66-2783-01 12 96076537 96076537 C T NTN4 Missense_Mutation p.E486K 0.34 tolerated(0.1) benign(0.006) TCGA-66-2783-01 13 101726913 101726913 G T NALCN Missense_Mutation p.A1352D 0.38 deleterious(0) probably_damaging(0.985) TCGA-66-2783-01 13 108861232 108861232 C A LIG4 Silent p.L795L 0.52 TCGA-66-2783-01 13 20411638 20411638 C A ZMYM5 3'UTR 0.24 TCGA-66-2783-01 13 20411639 20411639 C A ZMYM5 3'UTR 0.25 TCGA-66-2783-01 13 48953728 48953728 A G RB1 Splice_Site p.X445_splice 0.31 TCGA-66-2783-01 13 73649905 73649905 G C KLF5 Missense_Mutation p.E419Q 0.42 deleterious(0) probably_damaging(0.988) TCGA-66-2783-01 14 105716320 105716320 G A BTBD6 Missense_Mutation p.E257K 0.31 tolerated(0.22) benign(0.014) TCGA-66-2783-01 14 23886840 23886840 C T MYH7 Missense_Mutation p.A1409T 0.23 deleterious(0.03) possibly_damaging(0.653) TCGA-66-2783-01 14 55642126 55642126 G A DLGAP5 Silent p.V413V 0.20 TCGA-66-2783-01 14 59105230 59105230 T A DACT1 Missense_Mutation p.L104M 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-66-2783-01 14 71137911 71137911 G T TTC9 3'UTR 0.30 TCGA-66-2783-01 14 94909437 94909437 T A SERPINA11 Missense_Mutation p.Q348L 0.23 tolerated(0.23) benign(0.01) TCGA-66-2783-01 14 95033547 95033547 T C SERPINA4 Missense_Mutation p.M297T 0.29 tolerated(0.65) benign(0.067) TCGA-66-2783-01 14 95108208 95108208 C T SERPINA13P RNA 0.20 TCGA-66-2783-01 15 23261059 23261059 T A GOLGA8I Missense_Mutation p.L245Q 0.23 deleterious(0) possibly_damaging(0.674) TCGA-66-2783-01 15 25322134 25322134 G A SNORD116-9 3'Flank 0.06 TCGA-66-2783-01 15 25449311 25449311 C A SNORD115-20 5'Flank 0.52 TCGA-66-2783-01 15 31294626 31294626 G T TRPM1 Missense_Mutation p.T1443K 0.52 tolerated_low_confidence(0.5) benign(0.005) TCGA-66-2783-01 15 42445844 42445844 C T PLA2G4F Silent p.L155L 0.24 TCGA-66-2783-01 15 43494124 43494124 G A EPB42 Nonsense_Mutation p.Q641* 0.28 TCGA-66-2783-01 15 55838815 55838815 A G PYGO1 Silent p.F222F 0.25 TCGA-66-2783-01 15 89744906 89744906 G A ABHD2 3'UTR 0.22 TCGA-66-2783-01 16 11056372 11056372 C T CLEC16A Silent p.G90G 0.26 TCGA-66-2783-01 16 23424837 23424839 GCA - COG7 In_Frame_Del p.C447del 0.33 TCGA-66-2783-01 16 2811974 2811974 G T SRRM2 Missense_Mutation p.G482V 0.22 unknown(0) TCGA-66-2783-01 16 30978880 30978880 C T SETD1A Missense_Mutation p.P914L 0.29 benign(0.001) TCGA-66-2783-01 16 31391090 31391090 G T ITGAX Nonsense_Mutation p.G961* 0.32 TCGA-66-2783-01 16 32893885 32893885 G T RP11-989E6.3 5'Flank 0.19 TCGA-66-2783-01 16 46638350 46638350 C G SHCBP1 Missense_Mutation p.R238P 0.20 deleterious(0.01) probably_damaging(0.942) TCGA-66-2783-01 16 46962845 46962845 A T GPT2 Missense_Mutation p.K503M 0.25 deleterious(0.04) probably_damaging(0.974) TCGA-66-2783-01 16 48130667 48130667 T C ABCC12 Missense_Mutation p.Y1062C 0.27 deleterious(0) possibly_damaging(0.868) TCGA-66-2783-01 16 50357560 50357560 C G BRD7 Missense_Mutation p.D461H 0.26 deleterious(0) possibly_damaging(0.889) TCGA-66-2783-01 16 56947293 56947293 C T SLC12A3 Silent p.N1023N 0.19 TCGA-66-2783-01 16 64981585 64981585 T C CDH11 Missense_Mutation p.Y771C 0.24 deleterious(0) probably_damaging(0.999) TCGA-66-2783-01 16 66430103 66430103 T A CDH5 Silent p.T453T 0.27 TCGA-66-2783-01 16 68591960 68591960 C T ZFP90 Silent p.V31V 0.22 TCGA-66-2783-01 16 87748109 87748109 C A KLHDC4 Missense_Mutation p.R277I 0.25 tolerated(0.1) benign(0.37) TCGA-66-2783-01 16 90124449 90124449 G T PRDM7 3'UTR 0.26 TCGA-66-2783-01 17 11711193 11711193 C - DNAH9 Frame_Shift_Del p.Q2856Rfs*14 0.28 TCGA-66-2783-01 17 11784584 11784584 C G DNAH9 Missense_Mutation p.H3554D 0.40 possibly_damaging(0.772) TCGA-66-2783-01 17 18035764 18035764 C T MYO15A Intron 0.36 TCGA-66-2783-01 17 32483483 32483483 G T ASIC2 Silent p.T23T 0.23 TCGA-66-2783-01 17 40823051 40823051 C T PLEKHH3 Missense_Mutation p.G461E 0.30 tolerated(0.23) unknown(0) TCGA-66-2783-01 17 61615851 61615851 T C KCNH6 Silent p.A594A 0.29 TCGA-66-2783-01 17 71189200 71189200 G T COG1 5'UTR 0.16 TCGA-66-2783-01 17 72923807 72923807 C T OTOP2 Missense_Mutation p.A186V 0.20 tolerated(0.6) possibly_damaging(0.531) TCGA-66-2783-01 17 73814897 73814897 G A UNK Missense_Mutation p.E516K 0.10 tolerated(0.11) benign(0.272) TCGA-66-2783-01 17 77768705 77768705 A G CBX8 Missense_Mutation p.L300P 0.13 deleterious(0.01) possibly_damaging(0.766) TCGA-66-2783-01 18 19995852 19995852 A G CTAGE1 Silent p.N641N 0.28 TCGA-66-2783-01 18 3502471 3502471 C T DLGAP1 Intron 0.19 TCGA-66-2783-01 18 43519604 43519604 C A EPG5 Silent p.L687L 0.25 TCGA-66-2783-01 18 72228155 72228155 C T CNDP1 Missense_Mutation p.T123M 0.27 deleterious(0.01) benign(0.093) TCGA-66-2783-01 19 10745908 10745908 C T SLC44A2 Silent p.I375I 0.30 TCGA-66-2783-01 19 12059437 12059437 G T ZNF700 Nonsense_Mutation p.G200* 0.28 TCGA-66-2783-01 19 19390148 19390148 T A SUGP1 Missense_Mutation p.M468L 0.22 tolerated(0.22) benign(0.05) TCGA-66-2783-01 19 20044956 20044956 A G ZNF93 Missense_Mutation p.K398E 0.33 deleterious(0.02) possibly_damaging(0.477) TCGA-66-2783-01 19 2217885 2217885 A T DOT1L Missense_Mutation p.S887C 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.614) TCGA-66-2783-01 19 3193290 3193290 G A NCLN Missense_Mutation p.M128I 0.25 tolerated(0.06) benign(0.005) TCGA-66-2783-01 19 33639783 33639783 G C WDR88 Missense_Mutation p.A216P 0.24 tolerated(0.12) benign(0.041) TCGA-66-2783-01 19 38858205 38858205 C G CATSPERG Missense_Mutation p.Q943E 0.28 tolerated(0.77) benign(0.092) TCGA-66-2783-01 19 41630712 41630712 G C CYP2F1 Silent p.A351A 0.26 TCGA-66-2783-01 19 49692200 49692200 C T TRPM4 Intron 0.23 TCGA-66-2783-01 19 51984759 51984759 T C CEACAM18 Silent p.N232N 0.30 TCGA-66-2783-01 19 54387495 54387495 G T PRKCG Missense_Mutation p.D95Y 0.23 deleterious(0.01) possibly_damaging(0.738) TCGA-66-2783-01 19 56047510 56047510 T C SBK2 Missense_Mutation p.Q51R 0.40 tolerated(0.14) probably_damaging(0.968) TCGA-66-2783-01 19 56382266 56382266 C G NLRP4 Missense_Mutation p.R810G 0.24 tolerated(0.38) benign(0.078) TCGA-66-2783-01 19 57176503 57176503 C T ZNF835 Missense_Mutation p.G22S 0.28 tolerated(0.11) probably_damaging(0.982) TCGA-66-2783-01 19 57867632 57867632 T G ZNF304 Missense_Mutation p.F132C 0.24 deleterious(0.01) probably_damaging(0.935) TCGA-66-2783-01 19 5844460 5844460 G C FUT3 Missense_Mutation p.R131G 0.21 deleterious(0.01) probably_damaging(0.979) TCGA-66-2783-01 19 8181629 8181629 T C FBN3 Missense_Mutation p.N1214S 0.35 deleterious(0) possibly_damaging(0.63) TCGA-66-2783-01 19 9024157 9024157 G T MUC16 Missense_Mutation p.P12372Q 0.19 possibly_damaging(0.879) TCGA-66-2783-01 19 9056705 9056705 T A MUC16 Silent p.P10247P 0.25 TCGA-66-2783-01 1 103444940 103444940 G T COL11A1 Silent p.R870R 0.20 TCGA-66-2783-01 1 104297202 104297202 T A AMY1C Missense_Mutation p.H320Q 0.12 deleterious(0) possibly_damaging(0.616) TCGA-66-2783-01 1 115220031 115220031 G T AMPD1 Missense_Mutation p.F476L 0.05 tolerated(0.14) probably_damaging(0.999) TCGA-66-2783-01 1 118558588 118558588 C A SPAG17 Silent p.T1429T 0.25 TCGA-66-2783-01 1 145299882 145299882 G C NBPF10 Missense_Mutation p.E311Q 0.12 possibly_damaging(0.468) TCGA-66-2783-01 1 145473835 145473835 G A ANKRD34A Silent p.E169E 0.35 TCGA-66-2783-01 1 149399051 149399051 C T HIST2H3PS2 3'Flank 0.32 TCGA-66-2783-01 1 153958590 153958590 G T RAB13 Silent p.I41I 0.22 TCGA-66-2783-01 1 153984754 153984754 G C NUP210L Missense_Mutation p.F1582L 0.16 tolerated(0.57) benign(0.005) TCGA-66-2783-01 1 155006038 155006038 A C DCST2 Missense_Mutation p.V47G 0.29 tolerated(0.1) benign(0.037) TCGA-66-2783-01 1 157659687 157659687 C A FCRL3 Missense_Mutation p.G571C 0.43 tolerated(0.05) possibly_damaging(0.76) TCGA-66-2783-01 1 158615155 158615155 C G SPTA1 Missense_Mutation p.E1339D 0.48 tolerated(1) benign(0.023) TCGA-66-2783-01 1 158623161 158623161 C T SPTA1 Missense_Mutation p.V1031I 0.50 tolerated(0.05) benign(0.055) TCGA-66-2783-01 1 159900969 159900969 A G IGSF9 Silent p.D532D 0.20 TCGA-66-2783-01 1 169993677 169993677 T C KIFAP3 Missense_Mutation p.N301S 0.18 deleterious(0.05) probably_damaging(0.969) TCGA-66-2783-01 1 176563866 176563866 A T PAPPA2 Missense_Mutation p.M376L 0.20 deleterious(0.01) benign(0.111) TCGA-66-2783-01 1 179494492 179494492 G A AXDND1 Silent p.E840E 0.06 TCGA-66-2783-01 1 186008977 186008977 G A HMCN1 Missense_Mutation p.G2049E 0.47 probably_damaging(1) TCGA-66-2783-01 1 18618451 18618451 G T IGSF21 Missense_Mutation p.R92L 0.25 deleterious(0) probably_damaging(0.999) TCGA-66-2783-01 1 196762680 196762680 A T CFHR3 3'UTR 0.24 TCGA-66-2783-01 1 197390149 197390149 C T CRB1 Silent p.D397D 0.30 TCGA-66-2783-01 1 197407928 197407928 G C CRB1 Intron 0.11 TCGA-66-2783-01 1 201332453 201332453 T C TNNT2 Missense_Mutation p.M181V 0.36 deleterious(0) probably_damaging(0.943) TCGA-66-2783-01 1 205272861 205272861 C G NUAK2 Missense_Mutation p.R535P 0.43 tolerated(0.16) benign(0.007) TCGA-66-2783-01 1 206647710 206647710 A G IKBKE Missense_Mutation p.T42A 0.20 tolerated(0.4) benign(0.02) TCGA-66-2783-01 1 206730910 206730910 G T RASSF5 Intron 0.30 TCGA-66-2783-01 1 229633923 229633923 G A NUP133 Missense_Mutation p.S260F 0.07 deleterious(0) probably_damaging(0.99) TCGA-66-2783-01 1 247464543 247464543 C G ZNF496 Missense_Mutation p.D348H 0.20 deleterious(0.02) possibly_damaging(0.647) TCGA-66-2783-01 1 248039798 248039798 G T TRIM58 3'UTR 0.24 TCGA-66-2783-01 1 26885313 26885313 C G RPS6KA1 Missense_Mutation p.P376R 0.21 deleterious(0) probably_damaging(0.95) TCGA-66-2783-01 1 38058403 38058403 T A GNL2 Missense_Mutation p.S52C 0.25 deleterious(0.01) possibly_damaging(0.838) TCGA-66-2783-01 1 57383532 57383532 G T C8A 3'UTR 0.36 TCGA-66-2783-01 1 66036267 66036267 C A LEPR Missense_Mutation p.A51D 0.27 tolerated(0.13) possibly_damaging(0.461) TCGA-66-2783-01 1 70728385 70728385 C A ANKRD13C 3'UTR 0.26 TCGA-66-2783-01 1 76205738 76205738 A G ACADM Missense_Mutation p.D185G 0.26 deleterious(0.02) benign(0.057) TCGA-66-2783-01 20 15967727 15967727 A T MACROD2 Missense_Mutation p.Q359H 0.17 deleterious_low_confidence(0) possibly_damaging(0.889) TCGA-66-2783-01 20 18511331 18511331 A G SEC23B Missense_Mutation p.M373V 0.19 tolerated(0.79) benign(0.013) TCGA-66-2783-01 20 21492667 21492667 G T NKX2-2 Missense_Mutation p.A239E 0.21 deleterious(0.03) possibly_damaging(0.824) TCGA-66-2783-01 20 258973 258973 C A C20orf96 Missense_Mutation p.S188I 0.13 deleterious(0.02) possibly_damaging(0.807) TCGA-66-2783-01 20 278756 278756 G C ZCCHC3 Missense_Mutation p.G177R 0.10 deleterious(0.03) benign(0.005) TCGA-66-2783-01 20 33447370 33447370 C T GGT7 Missense_Mutation p.R297H 0.31 tolerated(0.3) benign(0.004) TCGA-66-2783-01 20 37580780 37580780 A G FAM83D Missense_Mutation p.T489A 0.26 tolerated(0.14) benign(0.001) TCGA-66-2783-01 20 62339934 62339934 T A ZGPAT Translation_Start_Site p.M1? 0.26 deleterious(0) probably_damaging(0.998) TCGA-66-2783-01 20 62339951 62339951 G A ZGPAT Missense_Mutation p.E7K 0.24 tolerated(0.09) benign(0.154) TCGA-66-2783-01 20 9624982 9624982 C T PAK7 5'UTR 0.19 TCGA-66-2783-01 21 10970050 10970050 A T TPTE Missense_Mutation p.S26R 0.40 tolerated_low_confidence(0.09) benign(0.157) TCGA-66-2783-01 21 11039104 11039104 C T BAGE2 RNA 0.04 TCGA-66-2783-01 21 34399120 34399120 G C OLIG2 5'UTR 0.24 TCGA-66-2783-01 21 45713059 45713059 G T AIRE Splice_Site p.X426_splice 0.27 TCGA-66-2783-01 22 31851891 31851891 C A EIF4ENIF1 Missense_Mutation p.S349I 0.47 deleterious(0) probably_damaging(0.998) TCGA-66-2783-01 22 32587176 32587176 G A RFPL2 Silent p.R240R 0.45 TCGA-66-2783-01 22 50646906 50646906 A T SELO Intron 0.17 TCGA-66-2783-01 2 119727813 119727814 - G MARCO Frame_Shift_Ins p.A110Cfs*19 0.20 TCGA-66-2783-01 2 125521710 125521710 G C CNTNAP5 Missense_Mutation p.R839P 0.18 deleterious(0) probably_damaging(0.974) TCGA-66-2783-01 2 133402883 133402883 G A GPR39 Missense_Mutation p.V356M 0.24 tolerated(0.19) benign(0) TCGA-66-2783-01 2 133403533 133403533 C T LYPD1 3'UTR 0.24 TCGA-66-2783-01 2 152382499 152382499 G C NEB Silent p.V7378V 0.25 TCGA-66-2783-01 2 166895938 166895938 G A SCN1A Nonsense_Mutation p.R862* 0.32 TCGA-66-2783-01 2 168107591 168107591 G C XIRP2 Missense_Mutation p.R3230P 0.27 possibly_damaging(0.889) TCGA-66-2783-01 2 178098960 178098960 C T NFE2L2 Missense_Mutation p.D29N 0.18 deleterious(0) probably_damaging(1) TCGA-66-2783-01 2 179404238 179404238 C T TTN Missense_Mutation p.G32852S 0.24 TCGA-66-2783-01 2 179417151 179417151 G C TTN Missense_Mutation p.P30159R 0.34 TCGA-66-2783-01 2 179593713 179593713 A C TTN Missense_Mutation p.I6351S 0.26 TCGA-66-2783-01 2 179640118 179640118 C A TTN Missense_Mutation p.G2158V 0.28 TCGA-66-2783-01 2 179664351 179664351 C A TTN Silent p.P259P 0.24 TCGA-66-2783-01 2 179701459 179701459 C G CCDC141 Intron 0.29 TCGA-66-2783-01 2 209030514 209030514 G T C2orf80 3'UTR 0.21 TCGA-66-2783-01 2 212812269 212812269 G A ERBB4 Missense_Mutation p.R103C 0.18 deleterious(0) probably_damaging(1) TCGA-66-2783-01 2 213921707 213921707 C T IKZF2 Missense_Mutation p.E86K 0.25 tolerated(0.21) benign(0.119) TCGA-66-2783-01 2 215301452 215301452 C G VWC2L Missense_Mutation p.P164A 0.15 deleterious(0.02) probably_damaging(0.987) TCGA-66-2783-01 2 220136372 220136372 G T TUBA4B RNA 0.27 TCGA-66-2783-01 2 220167082 220167082 A G PTPRN Silent p.P257P 0.35 TCGA-66-2783-01 2 220312995 220312995 G T SPEG Missense_Mutation p.R372L 0.27 benign(0.349) TCGA-66-2783-01 2 220371037 220371037 G T GMPPA Missense_Mutation p.R352L 0.26 deleterious(0) probably_damaging(0.999) TCGA-66-2783-01 2 232373713 232373713 C A LINC00471 RNA 0.26 TCGA-66-2783-01 2 232458559 232458559 C T C2orf57 Silent p.T299T 0.19 TCGA-66-2783-01 2 43927291 43927291 A T PLEKHH2 Silent p.S398S 0.27 TCGA-66-2783-01 2 44078792 44078792 A T ABCG8 Missense_Mutation p.Q131L 0.19 deleterious(0.02) possibly_damaging(0.776) TCGA-66-2783-01 2 80529653 80529653 C - LRRTM1 Frame_Shift_Del p.G431Afs*72 0.28 TCGA-66-2783-01 2 88407904 88407904 C A SMYD1 Missense_Mutation p.P387H 0.20 tolerated(0.06) benign(0.295) TCGA-66-2783-01 2 98928346 98928346 G T VWA3B Missense_Mutation p.D1196Y 0.18 deleterious_low_confidence(0.05) probably_damaging(0.953) TCGA-66-2783-01 3 100645170 100645170 C T ABI3BP Missense_Mutation p.G86R 0.63 deleterious(0) probably_damaging(0.953) TCGA-66-2783-01 3 107447803 107447803 G T BBX Missense_Mutation p.M199I 0.14 tolerated(0.09) benign(0.015) TCGA-66-2783-01 3 122634307 122634307 G A SEMA5B Silent p.I710I 0.23 TCGA-66-2783-01 3 124153219 124153219 C T KALRN Silent p.A963A 0.27 TCGA-66-2783-01 3 129290099 129290099 C T PLXND1 Silent p.G1128G 0.65 TCGA-66-2783-01 3 136646961 136646961 C T NCK1 Nonsense_Mutation p.R40* 0.26 TCGA-66-2783-01 3 138724557 138724557 C G PRR23A Missense_Mutation p.S185T 0.63 tolerated(0.65) possibly_damaging(0.527) TCGA-66-2783-01 3 142840260 142840260 G T CHST2 Missense_Mutation p.W201L 0.21 deleterious(0) probably_damaging(0.995) TCGA-66-2783-01 3 147130463 147130463 A G ZIC1 Missense_Mutation p.M381V 0.10 deleterious(0) probably_damaging(0.949) TCGA-66-2783-01 3 158422484 158422484 C G RARRES1 Intron 0.09 TCGA-66-2783-01 3 161221516 161221516 C T OTOL1 Missense_Mutation p.A407V 0.15 tolerated(0.79) possibly_damaging(0.644) TCGA-66-2783-01 3 180377270 180377270 C T CCDC39 Silent p.K236K 0.58 TCGA-66-2783-01 3 180667070 180667070 G T FXR1 Missense_Mutation p.R190L 0.27 deleterious(0) probably_damaging(0.998) TCGA-66-2783-01 3 186980499 186980499 C G MASP1 Missense_Mutation p.E83Q 0.22 tolerated(0.09) benign(0.149) TCGA-66-2783-01 3 47378109 47378109 G C KLHL18 Missense_Mutation p.R328P 0.35 deleterious(0.01) probably_damaging(0.926) TCGA-66-2783-01 3 48604596 48604596 C A COL7A1 Missense_Mutation p.G2692C 0.31 probably_damaging(1) TCGA-66-2783-01 4 1018453 1018453 G A FGFRL1 Splice_Site p.X358_splice 0.42 TCGA-66-2783-01 4 106155322 106155322 A T TET2 Missense_Mutation p.S75C 0.24 deleterious(0) probably_damaging(0.999) TCGA-66-2783-01 4 114251538 114251538 A T ANK2 Nonsense_Mutation p.R1013* 0.20 TCGA-66-2783-01 4 142155097 142155097 G T ZNF330 Missense_Mutation p.R306M 0.23 deleterious_low_confidence(0) possibly_damaging(0.756) TCGA-66-2783-01 4 155156611 155156611 C T DCHS2 Missense_Mutation p.V2610M 0.24 tolerated(0.83) benign(0.012) TCGA-66-2783-01 4 155253955 155253955 G A DCHS2 Silent p.I636I 0.27 TCGA-66-2783-01 4 155491904 155491904 A G FGB 3'UTR 0.36 TCGA-66-2783-01 4 164054361 164054361 C T NAF1 Silent p.R326R 0.25 TCGA-66-2783-01 4 17513587 17513587 G T QDPR Silent p.R31R 0.29 TCGA-66-2783-01 4 184241242 184241242 C A CLDN22 Nonsense_Mutation p.E44* 0.26 TCGA-66-2783-01 4 46264131 46264131 G C GABRA2 Missense_Mutation p.L291V 0.05 deleterious(0.01) possibly_damaging(0.764) TCGA-66-2783-01 4 48172291 48172291 C A TEC Missense_Mutation p.C143F 0.34 deleterious(0) probably_damaging(0.999) TCGA-66-2783-01 4 52861814 52861814 G C LRRC66 Missense_Mutation p.F458L 0.28 tolerated(0.42) benign(0.011) TCGA-66-2783-01 4 52936033 52936033 G A SPATA18 Missense_Mutation p.A157T 0.28 tolerated(0.19) benign(0.001) TCGA-66-2783-01 4 52944901 52944901 G A SPATA18 Missense_Mutation p.E341K 0.26 deleterious(0) probably_damaging(0.953) TCGA-66-2783-01 4 55131284 55131284 C T PDGFRA Intron 0.25 TCGA-66-2783-01 4 70596284 70596284 A G SULT1B1 Missense_Mutation p.L238S 0.25 tolerated(0.23) benign(0.327) TCGA-66-2783-01 4 70921229 70921229 A T HTN1 Silent p.S39S 0.17 TCGA-66-2783-01 4 72635072 72635072 A T GC Missense_Mutation p.L54Q 0.16 deleterious(0) probably_damaging(0.977) TCGA-66-2783-01 4 88766940 88766940 C A MEPE Missense_Mutation p.P307Q 0.25 deleterious(0) probably_damaging(1) TCGA-66-2783-01 5 132233979 132233979 A C AFF4 Missense_Mutation p.S444R 0.21 deleterious(0) probably_damaging(0.997) TCGA-66-2783-01 5 138842271 138842271 G T ECSCR 5'UTR 0.30 TCGA-66-2783-01 5 138842272 138842272 G A ECSCR 5'UTR 0.30 TCGA-66-2783-01 5 140801374 140801374 G T PCDHGA11 Nonsense_Mutation p.E194* 0.21 TCGA-66-2783-01 5 1489888 1489888 C A LPCAT1 Silent p.R193R 0.30 TCGA-66-2783-01 5 149441342 149441342 G A CSF1R Missense_Mutation p.P566L 0.29 deleterious(0) probably_damaging(1) TCGA-66-2783-01 5 156593032 156593032 T A FAM71B Missense_Mutation p.N50Y 0.23 deleterious(0) possibly_damaging(0.497) TCGA-66-2783-01 5 160047476 160047476 C - ATP10B Frame_Shift_Del p.G765Afs*13 0.25 TCGA-66-2783-01 5 169230202 169230202 C A DOCK2 Missense_Mutation p.Q899K 0.39 tolerated(1) benign(0.001) TCGA-66-2783-01 5 179528493 179528493 C T RASGEF1C 3'UTR 0.39 TCGA-66-2783-01 5 39135117 39135117 C T FYB Splice_Site p.X516_splice 0.23 TCGA-66-2783-01 5 41000798 41000798 G - MROH2B Frame_Shift_Del p.N1445Tfs*12 0.30 TCGA-66-2783-01 5 43547830 43547830 C A PAIP1 Missense_Mutation p.Q207H 0.30 deleterious(0) probably_damaging(1) TCGA-66-2783-01 5 60448845 60448845 G A NDUFAF2 3'UTR 0.36 TCGA-66-2783-01 5 68568823 68568823 A C CDK7 Missense_Mutation p.Q273H 0.29 tolerated(0.06) possibly_damaging(0.72) TCGA-66-2783-01 5 74676909 74676909 A T COL4A3BP Missense_Mutation p.Y707N 0.27 deleterious(0) probably_damaging(0.984) TCGA-66-2783-01 5 78322340 78322340 C T DMGDH Missense_Mutation p.M699I 0.28 tolerated(0.15) benign(0.05) TCGA-66-2783-01 5 85578418 85578418 G T NBPF22P RNA 0.36 TCGA-66-2783-01 5 9119128 9119128 C - SEMA5A Frame_Shift_Del p.G636Dfs*69 0.26 TCGA-66-2783-01 6 132649614 132649614 G C MOXD1 Missense_Mutation p.N261K 0.33 deleterious(0) probably_damaging(0.952) TCGA-66-2783-01 6 152770762 152770762 G C SYNE1 Nonsense_Mutation p.S1137* 0.04 TCGA-66-2783-01 6 166720810 166720810 T A PRR18 Missense_Mutation p.E274V 0.36 deleterious(0) possibly_damaging(0.607) TCGA-66-2783-01 6 29395006 29395006 C A OR11A1 Missense_Mutation p.G138V 0.51 deleterious(0.01) benign(0.065) TCGA-66-2783-01 6 31526324 31526324 G T NFKBIL1 Missense_Mutation p.R361L 0.73 deleterious(0) possibly_damaging(0.857) TCGA-66-2783-01 6 33256237 33256237 G A WDR46 Missense_Mutation p.S124F 0.54 tolerated(0.1) benign(0.157) TCGA-66-2783-01 6 348265 348265 G T DUSP22 Missense_Mutation p.E142D 0.08 tolerated(0.62) benign(0) TCGA-66-2783-01 6 50696583 50696583 G T TFAP2D Missense_Mutation p.V205F 0.53 deleterious(0.02) possibly_damaging(0.84) TCGA-66-2783-01 6 90323537 90323537 T A ANKRD6 Silent p.A181A 0.39 TCGA-66-2783-01 7 100349596 100349596 C G ZAN Nonsense_Mutation p.S623* 0.24 TCGA-66-2783-01 7 101200906 101200906 G A COL26A1 3'UTR 0.30 TCGA-66-2783-01 7 126544029 126544029 C G GRM8 Missense_Mutation p.D339H 0.17 tolerated(0.07) possibly_damaging(0.622) TCGA-66-2783-01 7 143632899 143632899 A G OR2F2 Missense_Mutation p.T192A 0.21 deleterious(0.02) possibly_damaging(0.491) TCGA-66-2783-01 7 143701878 143701878 C G OR6B1 Missense_Mutation p.I263M 0.25 tolerated(0.27) probably_damaging(0.99) TCGA-66-2783-01 7 151181828 151181828 C A RHEB Missense_Mutation p.G63W 0.27 deleterious(0) probably_damaging(1) TCGA-66-2783-01 7 71743773 71743773 C A CALN1 Missense_Mutation p.V48L 0.17 deleterious(0.05) probably_damaging(0.98) TCGA-66-2783-01 7 87792420 87792420 G T ADAM22 Missense_Mutation p.R667S 0.25 deleterious(0.03) possibly_damaging(0.831) TCGA-66-2783-01 7 97486048 97486048 T C ASNS Missense_Mutation p.I328M 0.22 deleterious(0) probably_damaging(0.999) TCGA-66-2783-01 8 113347704 113347704 C T CSMD3 Splice_Site p.X2340_splice 0.28 TCGA-66-2783-01 8 113529362 113529362 G A CSMD3 Nonsense_Mutation p.Q1553* 0.22 TCGA-66-2783-01 8 133150232 133150232 A T KCNQ3 Missense_Mutation p.F534I 0.25 deleterious(0) probably_damaging(0.999) TCGA-66-2783-01 8 133948102 133948102 G C TG Missense_Mutation p.L1678F 0.28 tolerated(0.13) benign(0.139) TCGA-66-2783-01 8 139255189 139255189 G T FAM135B Nonsense_Mutation p.S222* 0.16 TCGA-66-2783-01 8 143614677 143614677 C T BAI1 Silent p.C1140C 0.50 TCGA-66-2783-01 8 143960554 143960554 C A CYP11B1 Missense_Mutation p.V97L 0.26 tolerated(0.16) benign(0.426) TCGA-66-2783-01 8 144378669 144378669 G T ZNF696 Missense_Mutation p.S275I 0.26 deleterious(0.02) possibly_damaging(0.57) TCGA-66-2783-01 8 52232432 52232432 C T PXDNL 3'UTR 0.21 TCGA-66-2783-01 8 54791911 54791911 T A RGS20 Missense_Mutation p.S87T 0.24 deleterious_low_confidence(0.01) benign(0.055) TCGA-66-2783-01 8 68184115 68184115 T C ARFGEF1 Missense_Mutation p.Q465R 0.29 deleterious(0) probably_damaging(0.988) TCGA-66-2783-01 8 69017537 69017537 C A PREX2 Intron 0.25 TCGA-66-2783-01 8 69445445 69445445 G T C8orf34 Intron 0.31 TCGA-66-2783-01 8 71069128 71069128 C T NCOA2 Missense_Mutation p.R491H 0.26 deleterious(0.03) benign(0.363) TCGA-66-2783-01 8 75761575 75761575 A T PI15 3'UTR 0.20 TCGA-66-2783-01 8 77616309 77616309 C G ZFHX4 5'UTR 0.31 TCGA-66-2783-01 8 77764395 77764395 G A ZFHX4 Silent p.T1746T 0.29 TCGA-66-2783-01 9 101797359 101797359 G T COL15A1 Missense_Mutation p.G715W 0.52 deleterious(0) probably_damaging(1) TCGA-66-2783-01 9 116269689 116269689 C T RGS3 Missense_Mutation p.P403L 0.14 deleterious(0) probably_damaging(0.981) TCGA-66-2783-01 9 32633641 32633641 G T TAF1L Missense_Mutation p.A646E 0.54 tolerated(0.42) benign(0.088) TCGA-66-2783-01 9 75403364 75403364 G T TMC1 Missense_Mutation p.D332Y 0.56 deleterious(0) probably_damaging(0.986) TCGA-66-2783-01 9 86278932 86278932 C T UBQLN1 Missense_Mutation p.G492E 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-66-2783-01 9 95872921 95872921 G A C9orf89 Silent p.E74E 0.49 TCGA-66-2783-01 9 990423 990423 G A DMRT3 Silent p.V279V 0.46 TCGA-66-2783-01 X 109694197 109694197 A T RGAG1 Missense_Mutation p.M118L 0.51 tolerated(0.08) benign(0.216) TCGA-66-2783-01 X 1522275 1522275 G T ASMTL Silent p.R585R 0.31 TCGA-66-2783-01 X 152827614 152827614 G T ATP2B3 Missense_Mutation p.G1025W 0.49 deleterious(0.01) probably_damaging(1) TCGA-66-2783-01 X 155003879 155003879 C T SPRY3 Nonsense_Mutation p.Q116* 0.42 TCGA-66-2783-01 X 19564056 19564056 G C SH3KBP1 Missense_Mutation p.T536S 0.54 tolerated(0.53) benign(0.027) TCGA-66-2783-01 X 24580331 24580331 C T PCYT1B 3'UTR 0.47 TCGA-66-2783-01 X 34147915 34147915 G T FAM47A 3'UTR 0.39 TCGA-66-2783-01 X 37029201 37029201 G C FAM47C Missense_Mutation p.M906I 0.57 tolerated(0.18) benign(0.39) TCGA-66-2783-01 X 63411391 63411391 C T AMER1 Silent p.E592E 0.49 TCGA-66-2783-01 X 99661771 99661771 C T PCDH19 Missense_Mutation p.E609K 0.60 tolerated(0.07) possibly_damaging(0.57) TCGA-66-2783-01 Y 24460817 24460817 G A RBMY2FP RNA 0.71 TCGA-66-2783-01 Y 5369195 5369195 C A PCDH11Y Missense_Mutation p.T1076K 0.55 deleterious(0.01) benign(0.255) TCGA-66-2785-01 10 101802191 101802191 G T CPN1 Missense_Mutation p.P457H 0.39 deleterious_low_confidence(0) possibly_damaging(0.62) TCGA-66-2785-01 10 105110820 105110820 C G PCGF6 Missense_Mutation p.E2Q 0.13 deleterious_low_confidence(0) unknown(0) TCGA-66-2785-01 10 105912413 105912413 C G WDR96 Missense_Mutation p.L1204F 0.14 deleterious(0) probably_damaging(0.995) TCGA-66-2785-01 10 106075282 106075282 C G ITPRIP Missense_Mutation p.R176S 0.09 deleterious(0) probably_damaging(0.925) TCGA-66-2785-01 10 108430994 108430994 C G SORCS1 Splice_Site p.X730_splice 0.32 TCGA-66-2785-01 10 114059307 114059307 G C TECTB Missense_Mutation p.E298Q 0.18 deleterious(0) probably_damaging(0.998) TCGA-66-2785-01 10 115980379 115980379 G C TDRD1 Missense_Mutation p.Q849H 0.19 tolerated(0.48) benign(0) TCGA-66-2785-01 10 120095918 120095918 C A FAM204A Missense_Mutation p.G4W 0.16 deleterious(0) probably_damaging(1) TCGA-66-2785-01 10 12150012 12150012 C G DHTKD1 Missense_Mutation p.Q718E 0.14 deleterious(0.01) probably_damaging(0.96) TCGA-66-2785-01 10 12279228 12279228 C G CDC123 Missense_Mutation p.F217L 0.05 deleterious(0.03) probably_damaging(0.93) TCGA-66-2785-01 10 127434418 127434418 G A EDRF1 Silent p.R911R 0.18 TCGA-66-2785-01 10 127569455 127569455 C A DHX32 5'UTR 0.35 TCGA-66-2785-01 10 127693455 127693455 T C FANK1 Missense_Mutation p.L181P 0.39 deleterious(0) probably_damaging(0.933) TCGA-66-2785-01 10 16866915 16866915 G C CUBN 3'UTR 0.25 TCGA-66-2785-01 10 16911750 16911750 G A CUBN Silent p.C3113C 0.15 TCGA-66-2785-01 10 18331793 18331793 A G SLC39A12 3'UTR 0.09 TCGA-66-2785-01 10 25231336 25231336 C G PRTFDC1 Missense_Mutation p.L26F 0.15 deleterious(0) probably_damaging(0.992) TCGA-66-2785-01 10 27306664 27306664 T A ANKRD26 Missense_Mutation p.T1425S 0.26 tolerated(0.46) benign(0.002) TCGA-66-2785-01 10 34620181 34620181 C G PARD3 Missense_Mutation p.L902F 0.16 deleterious(0.02) possibly_damaging(0.887) TCGA-66-2785-01 10 38345149 38345149 G A ZNF33A Silent p.G699G 0.12 TCGA-66-2785-01 10 43088960 43088960 G A ZNF33B Nonsense_Mutation p.Q480* 0.10 TCGA-66-2785-01 10 43615124 43615124 C T RET Silent p.L846L 0.23 TCGA-66-2785-01 10 46028702 46028702 C G MARCH8 5'UTR 0.13 TCGA-66-2785-01 10 468776 468776 G A DIP2C Nonsense_Mutation p.Q198* 0.15 TCGA-66-2785-01 10 47086923 47086923 C T NPY4R Missense_Mutation p.S47F 0.05 tolerated(0.09) benign(0.006) TCGA-66-2785-01 10 48389546 48389546 G A RBP3 Silent p.F444F 0.17 TCGA-66-2785-01 10 50374823 50374823 G T C10orf128 Intron 0.23 TCGA-66-2785-01 10 5040915 5040915 C A AKR1C2 Nonsense_Mutation p.G158* 0.32 TCGA-66-2785-01 10 51826454 51826454 C G FAM21A 5'Flank 0.13 TCGA-66-2785-01 10 53458459 53458459 C G CSTF2T Missense_Mutation p.G284A 0.12 tolerated(0.14) probably_damaging(0.987) TCGA-66-2785-01 10 64573644 64573644 G T EGR2 Missense_Mutation p.P252T 0.28 deleterious(0.03) possibly_damaging(0.908) TCGA-66-2785-01 10 6533699 6533699 C T PRKCQ Missense_Mutation p.E246K 0.15 deleterious(0) benign(0.41) TCGA-66-2785-01 10 69934114 69934114 G C MYPN Missense_Mutation p.Q755H 0.17 tolerated(0.12) benign(0.006) TCGA-66-2785-01 10 69961666 69961666 G C MYPN Missense_Mutation p.E1192Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-66-2785-01 10 70045001 70045001 A G PBLD Intron 0.54 TCGA-66-2785-01 10 70525822 70525822 G C CCAR1 Missense_Mutation p.E762Q 0.10 deleterious(0) probably_damaging(0.932) TCGA-66-2785-01 10 75407379 75407379 C G SYNPO2L Silent p.L677L 0.17 TCGA-66-2785-01 10 81373854 81373854 C T SFTPA1 Silent p.T259T 0.23 TCGA-66-2785-01 10 82126743 82126743 C G DYDC2 3'UTR 0.05 TCGA-66-2785-01 10 85904678 85904678 A T GHITM Missense_Mutation p.Y130F 0.35 tolerated(0.06) possibly_damaging(0.861) TCGA-66-2785-01 10 93741417 93741417 G C BTAF1 Missense_Mutation p.L591F 0.15 deleterious(0.01) possibly_damaging(0.706) TCGA-66-2785-01 10 93749178 93749178 C T BTAF1 Nonsense_Mutation p.Q899* 0.14 TCGA-66-2785-01 10 95557191 95557191 G T LGI1 Silent p.V435V 0.16 TCGA-66-2785-01 10 95658372 95658372 A C SLC35G1 Missense_Mutation p.T75P 0.16 deleterious(0.01) possibly_damaging(0.864) TCGA-66-2785-01 10 97392719 97392719 C G ALDH18A1 Missense_Mutation p.E269Q 0.06 deleterious(0.04) benign(0.153) TCGA-66-2785-01 10 98273363 98273363 C G TLL2 Missense_Mutation p.G27A 0.16 tolerated_low_confidence(0.21) benign(0.073) TCGA-66-2785-01 11 100999138 100999138 C T PGR Missense_Mutation p.E222K 0.11 tolerated_low_confidence(0.05) benign(0.085) TCGA-66-2785-01 11 101834523 101834523 G A KIAA1377 Silent p.P919P 0.13 TCGA-66-2785-01 11 105797515 105797515 C T GRIA4 Silent p.L632L 0.13 TCGA-66-2785-01 11 106888687 106888687 G A GUCY1A2 Missense_Mutation p.S32F 0.12 deleterious_low_confidence(0) possibly_damaging(0.452) TCGA-66-2785-01 11 107263540 107263540 G C CWF19L2 Missense_Mutation p.L567V 0.12 tolerated(0.52) benign(0.004) TCGA-66-2785-01 11 108383146 108383146 G A EXPH5 Missense_Mutation p.L1030F 0.07 tolerated(0.09) possibly_damaging(0.594) TCGA-66-2785-01 11 111957603 111957603 G T SDHD 5'UTR 0.12 TCGA-66-2785-01 11 113265686 113265686 G A ANKK1 Silent p.Q172Q 0.21 TCGA-66-2785-01 11 113281384 113281384 G T DRD2 3'UTR 0.16 TCGA-66-2785-01 11 113934591 113934591 C T ZBTB16 Missense_Mutation p.S190L 0.05 tolerated(0.05) benign(0.072) TCGA-66-2785-01 11 117351983 117351983 G C DSCAML1 Silent p.L914L 0.11 TCGA-66-2785-01 11 117389208 117389208 C G DSCAML1 Missense_Mutation p.E555Q 0.04 tolerated(0.33) possibly_damaging(0.879) TCGA-66-2785-01 11 118247311 118247311 G A UBE4A Silent p.L498L 0.31 TCGA-66-2785-01 11 118521218 118521218 C T PHLDB1 Silent p.F1280F 0.16 TCGA-66-2785-01 11 118919196 118919196 C G HYOU1 Missense_Mutation p.E749Q 0.11 deleterious(0.02) probably_damaging(0.99) TCGA-66-2785-01 11 118919543 118919543 C G HYOU1 Missense_Mutation p.G683A 0.07 tolerated(0.64) benign(0.004) TCGA-66-2785-01 11 118984642 118984642 G A C2CD2L Missense_Mutation p.V524M 0.18 tolerated(0.1) benign(0.357) TCGA-66-2785-01 11 119029033 119029033 C G ABCG4 Silent p.L386L 0.16 TCGA-66-2785-01 11 119210417 119210417 G C C1QTNF5 Missense_Mutation p.S119C 0.14 deleterious(0.01) possibly_damaging(0.567) TCGA-66-2785-01 11 120178198 120178198 G A POU2F3 Silent p.P262P 0.14 TCGA-66-2785-01 11 120346150 120346150 G C ARHGEF12 Missense_Mutation p.D1071H 0.13 deleterious(0) probably_damaging(0.975) TCGA-66-2785-01 11 122850019 122850019 T A BSX Missense_Mutation p.T137S 0.13 deleterious(0.03) probably_damaging(0.991) TCGA-66-2785-01 11 123894542 123894542 T A OR10G9 Missense_Mutation p.Y275N 0.16 tolerated(0.4) benign(0.25) TCGA-66-2785-01 11 124310156 124310156 G - OR8B8 Frame_Shift_Del p.L276Yfs*13 0.32 TCGA-66-2785-01 11 124766924 124766924 C A ROBO4 Missense_Mutation p.G102C 0.18 deleterious(0.04) probably_damaging(0.912) TCGA-66-2785-01 11 125483013 125483013 A G STT3A Missense_Mutation p.R499G 0.15 deleterious(0.01) possibly_damaging(0.515) TCGA-66-2785-01 11 125792816 125792816 T A DDX25 3'UTR 0.43 TCGA-66-2785-01 11 130064532 130064532 C G ST14 Intron 0.13 TCGA-66-2785-01 11 134086933 134086933 G C NCAPD3 Missense_Mutation p.F93L 0.13 tolerated(1) benign(0.001) TCGA-66-2785-01 11 134118800 134118800 G C THYN1 Silent p.L178L 0.17 TCGA-66-2785-01 11 14277308 14277308 T G SPON1 RNA 0.11 TCGA-66-2785-01 11 14889102 14889102 T C PDE3B Silent p.R979R 0.17 TCGA-66-2785-01 11 15247260 15247260 C T INSC Silent p.I399I 0.17 TCGA-66-2785-01 11 16068081 16068081 C G SOX6 Silent p.L534L 0.15 TCGA-66-2785-01 11 18631241 18631241 C G SPTY2D1 3'UTR 0.15 TCGA-66-2785-01 11 18631611 18631611 C G SPTY2D1 Intron 0.14 TCGA-66-2785-01 11 18755112 18755112 G T PTPN5 Missense_Mutation p.N357K 0.26 deleterious(0.01) probably_damaging(1) TCGA-66-2785-01 11 20483558 20483558 G A PRMT3 Missense_Mutation p.A369T 0.27 probably_damaging(0.993) TCGA-66-2785-01 11 20515483 20515483 G T PRMT3 Missense_Mutation p.D456Y 0.11 probably_damaging(0.999) TCGA-66-2785-01 11 30033664 30033664 C T KCNA4 Missense_Mutation p.E188K 0.15 deleterious(0) probably_damaging(0.985) TCGA-66-2785-01 11 30255159 30255159 A T FSHB Missense_Mutation p.T68S 0.06 tolerated(0.07) benign(0.029) TCGA-66-2785-01 11 40136590 40136590 A C LRRC4C Missense_Mutation p.V418G 0.12 deleterious(0.04) benign(0.003) TCGA-66-2785-01 11 43436245 43436245 G C TTC17 Missense_Mutation p.E724Q 0.15 tolerated(0.53) benign(0.074) TCGA-66-2785-01 11 44129245 44129245 G C EXT2 Missense_Mutation p.E28Q 0.08 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-66-2785-01 11 46690091 46690091 C T ATG13 Missense_Mutation p.P432S 0.22 tolerated(0.13) benign(0.132) TCGA-66-2785-01 11 47188357 47188357 T C ARFGAP2 Missense_Mutation p.K429R 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-66-2785-01 11 47397209 47397209 G A SPI1 Silent p.L40L 0.31 TCGA-66-2785-01 11 47776136 47776136 C G FNBP4 Missense_Mutation p.E132Q 0.12 tolerated(0.47) benign(0.159) TCGA-66-2785-01 11 4790208 4790208 T C MMP26 Intron 0.26 TCGA-66-2785-01 11 48266731 48266731 T C OR4X2 Silent p.L26L 0.13 TCGA-66-2785-01 11 4967535 4967535 C - OR51A4 Frame_Shift_Del p.A266Pfs*22 0.31 TCGA-66-2785-01 11 4967872 4967872 C G OR51A4 Missense_Mutation p.K153N 0.41 deleterious(0) possibly_damaging(0.77) TCGA-66-2785-01 11 5344952 5344952 G C OR51B2 Missense_Mutation p.F192L 0.09 deleterious(0.05) benign(0.443) TCGA-66-2785-01 11 55406327 55406327 C G OR4P4 Missense_Mutation p.P165R 0.12 deleterious(0) probably_damaging(0.976) TCGA-66-2785-01 11 55418433 55418433 C A OR4S2 Missense_Mutation p.S18R 0.26 deleterious(0.02) benign(0.034) TCGA-66-2785-01 11 55873189 55873189 C T OR8H2 Missense_Mutation p.T224I 0.24 deleterious(0.02) possibly_damaging(0.9) TCGA-66-2785-01 11 55873190 55873190 C G OR8H2 Silent p.T224T 0.24 TCGA-66-2785-01 11 56020666 56020666 G T OR5T3 Missense_Mutation p.V331L 0.23 tolerated(0.96) unknown(0) TCGA-66-2785-01 11 56057802 56057802 C G OR8H1 Missense_Mutation p.G246A 0.15 tolerated(0.56) benign(0.162) TCGA-66-2785-01 11 562244 562244 C G RASSF7 Nonsense_Mutation p.S97* 0.17 TCGA-66-2785-01 11 57310459 57310459 A T SMTNL1 Missense_Mutation p.K133I 0.20 deleterious(0) probably_damaging(0.998) TCGA-66-2785-01 11 57428587 57428587 C A CLP1 Silent p.V319V 0.14 TCGA-66-2785-01 11 5776200 5776200 C G OR52N4 Missense_Mutation p.S77C 0.05 deleterious(0.01) benign(0.443) TCGA-66-2785-01 11 57799089 57799089 A T OR6Q1 Missense_Mutation p.Y222F 0.34 deleterious(0) probably_damaging(0.992) TCGA-66-2785-01 11 58034692 58034692 C T OR10W1 Silent p.V213V 0.17 TCGA-66-2785-01 11 58715439 58715439 G A GLYATL1 Splice_Site p.X93_splice 0.24 TCGA-66-2785-01 11 58978605 58978605 G C MPEG1 Silent p.V578V 0.28 TCGA-66-2785-01 11 59131934 59131934 G C OR5AN1 Translation_Start_Site p.M1? 0.10 tolerated(0.06) benign(0.081) TCGA-66-2785-01 11 59368769 59368769 T G OSBP Missense_Mutation p.N371H 0.14 tolerated(0.14) benign(0.336) TCGA-66-2785-01 11 59368814 59368814 C G OSBP Missense_Mutation p.E356Q 0.14 deleterious(0.01) benign(0.354) TCGA-66-2785-01 11 601622 601622 C G PHRF1 Missense_Mutation p.S358C 0.23 deleterious(0.01) probably_damaging(0.976) TCGA-66-2785-01 11 60470904 60470904 G C MS4A8 Silent p.A91A 0.16 TCGA-66-2785-01 11 60714117 60714117 G C SLC15A3 Silent p.L245L 0.13 TCGA-66-2785-01 11 61732578 61732578 C T FTH1 Missense_Mutation p.D90N 0.09 deleterious(0.01) benign(0.016) TCGA-66-2785-01 11 62288670 62288670 G C AHNAK Missense_Mutation p.L4407V 0.14 benign(0.175) TCGA-66-2785-01 11 62414079 62414080 AG - GANAB 5'UTR 0.15 TCGA-66-2785-01 11 62496297 62496297 C T TTC9C 5'UTR 0.37 TCGA-66-2785-01 11 62519630 62519630 C G ZBTB3 Missense_Mutation p.D553H 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.757) TCGA-66-2785-01 11 62554031 62554031 G C TAF6L Missense_Mutation p.E378Q 0.21 tolerated(0.21) benign(0.179) TCGA-66-2785-01 11 62650436 62650436 T C SLC3A2 Missense_Mutation p.S321P 0.27 tolerated(0.51) benign(0.001) TCGA-66-2785-01 11 62933655 62933655 C G SLC22A25 Missense_Mutation p.Q382H 0.23 deleterious(0.01) probably_damaging(0.938) TCGA-66-2785-01 11 63276044 63276044 C G LGALS12 Missense_Mutation p.T52R 0.18 deleterious(0) probably_damaging(0.997) TCGA-66-2785-01 11 63963170 63963170 A T STIP1 Missense_Mutation p.D186V 0.13 deleterious(0.01) benign(0.347) TCGA-66-2785-01 11 639799 639799 G A DRD4 Missense_Mutation p.V184M 0.21 tolerated(0.07) unknown(0) TCGA-66-2785-01 11 6413202 6413202 G A SMPD1 Missense_Mutation p.A303T 0.39 tolerated(0.56) benign(0.003) TCGA-66-2785-01 11 64990981 64990981 T G SLC22A20 RNA 0.10 TCGA-66-2785-01 11 65161798 65161798 C G FRMD8 Nonsense_Mutation p.Y161* 0.27 TCGA-66-2785-01 11 65308030 65308030 C T LTBP3 Silent p.V1011V 0.15 TCGA-66-2785-01 11 66357888 66357888 G C CCDC87 3'UTR 0.09 TCGA-66-2785-01 11 67074336 67074336 C T SSH3 Missense_Mutation p.P123S 0.15 tolerated(0.63) benign(0.104) TCGA-66-2785-01 11 67934503 67934503 G C SUV420H1 Missense_Mutation p.Q374E 0.08 deleterious(0.03) possibly_damaging(0.519) TCGA-66-2785-01 11 67953375 67953375 C G SUV420H1 Missense_Mutation p.E61Q 0.16 deleterious(0) probably_damaging(0.946) TCGA-66-2785-01 11 68855388 68855388 G A TPCN2 Silent p.L742L 0.15 TCGA-66-2785-01 11 70049751 70049751 C T FADD Silent p.L62L 0.20 TCGA-66-2785-01 11 70333442 70333442 C G SHANK2 Missense_Mutation p.E987Q 0.10 tolerated(0.09) benign(0.04) TCGA-66-2785-01 11 71175151 71175151 C T NADSYN1 Missense_Mutation p.R124C 0.29 deleterious(0) probably_damaging(0.988) TCGA-66-2785-01 11 71724238 71724238 C T NUMA1 Silent p.L1437L 0.15 TCGA-66-2785-01 11 71940529 71940529 C G INPPL1 Nonsense_Mutation p.S227* 0.15 TCGA-66-2785-01 11 73584241 73584241 G C COA4 Missense_Mutation p.F61L 0.14 deleterious(0) probably_damaging(0.994) TCGA-66-2785-01 11 74862428 74862428 T C SLCO2B1 Translation_Start_Site p.M1? 0.24 deleterious_low_confidence(0) benign(0.06) TCGA-66-2785-01 11 82642927 82642927 C G C11orf82 Missense_Mutation p.Q183E 0.12 deleterious(0.03) possibly_damaging(0.524) TCGA-66-2785-01 11 82643305 82643305 G C C11orf82 Missense_Mutation p.E309Q 0.16 tolerated(0.55) benign(0.01) TCGA-66-2785-01 11 83170885 83170885 C A DLG2 Missense_Mutation p.W968C 0.22 deleterious(0) probably_damaging(0.998) TCGA-66-2785-01 11 88911272 88911272 G A TYR Missense_Mutation p.G51S 0.09 deleterious(0.02) benign(0.259) TCGA-66-2785-01 11 89073286 89073286 C T NOX4 Missense_Mutation p.R464K 0.13 tolerated(0.27) benign(0.268) TCGA-66-2785-01 11 89135642 89135642 C G NOX4 Missense_Mutation p.S233T 0.12 tolerated(0.44) benign(0.024) TCGA-66-2785-01 11 8934078 8934078 G C AKIP1 Missense_Mutation p.G101R 0.16 tolerated(0.36) probably_damaging(1) TCGA-66-2785-01 11 89531284 89531284 T C TRIM49 3'UTR 0.07 TCGA-66-2785-01 11 89867912 89867912 G T NAALAD2 5'UTR 0.33 TCGA-66-2785-01 11 89882195 89882195 G C NAALAD2 Missense_Mutation p.E135Q 0.10 deleterious(0) probably_damaging(0.997) TCGA-66-2785-01 12 101721006 101721006 T A UTP20 Silent p.P1063P 0.27 TCGA-66-2785-01 12 10194126 10194126 G C CLEC9A 5'UTR 0.11 TCGA-66-2785-01 12 102120263 102120263 C A CHPT1 Intron 0.26 TCGA-66-2785-01 12 104134505 104134505 G A STAB2 Missense_Mutation p.C1951Y 0.17 deleterious(0) possibly_damaging(0.868) TCGA-66-2785-01 12 104331551 104331551 C G HSP90B1 Missense_Mutation p.F274L 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-66-2785-01 12 105583854 105583854 C G APPL2 Missense_Mutation p.E447Q 0.16 tolerated(0.24) benign(0.207) TCGA-66-2785-01 12 10603638 10603638 A G KLRC1 Missense_Mutation p.Y40H 0.09 tolerated(0.05) benign(0.103) TCGA-66-2785-01 12 107208966 107208966 G C RIC8B Missense_Mutation p.E209Q 0.18 tolerated(0.07) benign(0.083) TCGA-66-2785-01 12 109510129 109510129 C G USP30 Missense_Mutation p.P200R 0.13 tolerated(0.12) benign(0.219) TCGA-66-2785-01 12 10961880 10961880 C G TAS2R9 Missense_Mutation p.M265I 0.08 tolerated(1) probably_damaging(0.95) TCGA-66-2785-01 12 110252356 110252356 G A TRPV4 Silent p.P82P 0.06 TCGA-66-2785-01 12 110643430 110643430 G C IFT81 Missense_Mutation p.D583H 0.13 tolerated(0.09) benign(0.023) TCGA-66-2785-01 12 11174300 11174300 G C TAS2R19 Missense_Mutation p.L291V 0.11 tolerated(0.07) benign(0.393) TCGA-66-2785-01 12 11174553 11174553 G C TAS2R19 Silent p.L206L 0.03 TCGA-66-2785-01 12 112143635 112143635 C G ACAD10 Missense_Mutation p.Q144E 0.05 tolerated(1) possibly_damaging(0.79) TCGA-66-2785-01 12 113629661 113629661 A T RITA1 3'UTR 0.29 TCGA-66-2785-01 12 11461171 11461171 G C PRB4 3'UTR 0.08 TCGA-66-2785-01 12 114793393 114793393 G C TBX5 Missense_Mutation p.Q501E 0.27 deleterious(0.01) possibly_damaging(0.55) TCGA-66-2785-01 12 12006363 12006363 G A ETV6 Missense_Mutation p.D111N 0.07 deleterious(0) probably_damaging(1) TCGA-66-2785-01 12 120502495 120502495 G T CCDC64 Intron 0.18 TCGA-66-2785-01 12 120649813 120649813 G C PXN 3'UTR 0.29 TCGA-66-2785-01 12 120652667 120652667 G C PXN Missense_Mutation p.F427L 0.16 deleterious(0) probably_damaging(0.987) TCGA-66-2785-01 12 120652718 120652718 G C PXN Missense_Mutation p.F410L 0.08 deleterious(0) probably_damaging(0.991) TCGA-66-2785-01 12 121465579 121465579 G C OASL Silent p.L233L 0.20 TCGA-66-2785-01 12 121746230 121746230 G C ANAPC5 3'UTR 0.21 TCGA-66-2785-01 12 12251997 12251997 G A BCL2L14 3'UTR 0.07 TCGA-66-2785-01 12 122803817 122803817 C A CLIP1 Nonsense_Mutation p.E1110* 0.30 TCGA-66-2785-01 12 122991435 122991435 C T RSRC2 Silent p.L357L 0.10 TCGA-66-2785-01 12 123805125 123805125 G A SBNO1 Missense_Mutation p.L841F 0.12 tolerated(0.79) benign(0.001) TCGA-66-2785-01 12 124103976 124103976 C G DDX55 Intron 0.34 TCGA-66-2785-01 12 124297756 124297756 C T DNAH10 Nonsense_Mutation p.Q946* 0.20 TCGA-66-2785-01 12 124311323 124311323 C G DNAH10 Silent p.L1305L 0.12 TCGA-66-2785-01 12 130884263 130884263 G A RIMBP2 Silent p.H1031H 0.19 TCGA-66-2785-01 12 130926707 130926707 A T RIMBP2 Missense_Mutation p.L380Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-66-2785-01 12 130935770 130935770 G A RIMBP2 Silent p.S141S 0.26 TCGA-66-2785-01 12 133294611 133294611 C T PGAM5 Silent p.F208F 0.12 TCGA-66-2785-01 12 133373127 133373127 G A GOLGA3 Nonsense_Mutation p.Q700* 0.17 TCGA-66-2785-01 12 13906545 13906545 T A GRIN2B Missense_Mutation p.Y239F 0.23 tolerated(0.35) benign(0.046) TCGA-66-2785-01 12 14796593 14796593 C G GUCY2C Silent p.L615L 0.14 TCGA-66-2785-01 12 15262294 15262294 C G RERG Missense_Mutation p.G117A 0.13 tolerated(0.32) benign(0.359) TCGA-66-2785-01 12 18889229 18889229 G T PLCZ1 Missense_Mutation p.L21I 0.24 tolerated(0.07) benign(0.043) TCGA-66-2785-01 12 1889746 1889746 C T ADIPOR2 Missense_Mutation p.S198L 0.19 deleterious(0.02) probably_damaging(1) TCGA-66-2785-01 12 21757567 21757567 C G GYS2 5'UTR 0.12 TCGA-66-2785-01 12 247613 247613 G C IQSEC3 Missense_Mutation p.E362Q 0.17 tolerated(0.05) probably_damaging(0.983) TCGA-66-2785-01 12 26217997 26217997 G C RASSF8 Missense_Mutation p.E224Q 0.11 deleterious(0.01) possibly_damaging(0.461) TCGA-66-2785-01 12 27135731 27135731 G C TM7SF3 Missense_Mutation p.F310L 0.13 deleterious(0.02) probably_damaging(0.998) TCGA-66-2785-01 12 29639178 29639178 C G OVCH1 Splice_Site p.X332_splice 0.12 TCGA-66-2785-01 12 2994677 2994677 G A RHNO1 Missense_Mutation p.D49N 0.04 deleterious(0.01) probably_damaging(0.955) TCGA-66-2785-01 12 32945394 32945394 G T PKP2 Missense_Mutation p.S870R 0.26 deleterious(0.01) benign(0.382) TCGA-66-2785-01 12 3701394 3701394 C T PRMT8 Intron 0.06 TCGA-66-2785-01 12 40158639 40158639 G C SLC2A13 Missense_Mutation p.F489L 0.09 tolerated(0.63) benign(0.001) TCGA-66-2785-01 12 40637414 40637414 A G LRRK2 Missense_Mutation p.M257V 0.15 deleterious(0.04) benign(0.101) TCGA-66-2785-01 12 44148331 44148331 C A PUS7L Missense_Mutation p.D240Y 0.14 deleterious(0) benign(0.443) TCGA-66-2785-01 12 44913929 44913929 C A NELL2 Silent p.P803P 0.10 TCGA-66-2785-01 12 45744461 45744461 C G ANO6 Nonsense_Mutation p.S277* 0.15 TCGA-66-2785-01 12 46231199 46231199 A C ARID2 Missense_Mutation p.R373S 0.31 tolerated(0.19) probably_damaging(0.996) TCGA-66-2785-01 12 49315297 49315297 G C CCDC65 3'UTR 0.22 TCGA-66-2785-01 12 49434726 49434726 G - KMT2D Frame_Shift_Del p.P2276Hfs*10 0.12 TCGA-66-2785-01 12 50368169 50368169 G A AQP6 Silent p.L155L 0.11 TCGA-66-2785-01 12 50369453 50369453 G C AQP6 Nonstop_Mutation p.*283Sext*35 0.10 TCGA-66-2785-01 12 51319290 51319290 C T METTL7A Missense_Mutation p.L157F 0.17 deleterious(0) probably_damaging(0.952) TCGA-66-2785-01 12 51495742 51495742 C G TFCP2 Missense_Mutation p.R376T 0.11 deleterious(0.01) benign(0.323) TCGA-66-2785-01 12 52282470 52282470 G T ANKRD33 Missense_Mutation p.E88D 0.37 tolerated(0.07) benign(0.006) TCGA-66-2785-01 12 52845896 52845896 G A KRT6B 5'UTR 0.28 TCGA-66-2785-01 12 53086361 53086361 G T KRT77 Missense_Mutation p.A424E 0.30 deleterious(0) probably_damaging(0.978) TCGA-66-2785-01 12 54379177 54379177 G A HOXC10 Missense_Mutation p.R45K 0.13 tolerated(0.16) benign(0.056) TCGA-66-2785-01 12 56222210 56222210 G - DNAJC14 Frame_Shift_Del p.P78Qfs*178 0.14 TCGA-66-2785-01 12 56498399 56498399 C G PA2G4 5'UTR 0.15 TCGA-66-2785-01 12 56637078 56637078 C T ANKRD52 Missense_Mutation p.V1027I 0.22 tolerated(0.24) benign(0.001) TCGA-66-2785-01 12 57490445 57490445 C G STAT6 Missense_Mutation p.L818F 0.13 deleterious_low_confidence(0) benign(0.237) TCGA-66-2785-01 12 5756892 5756892 C A ANO2 Splice_Site p.X540_splice 0.09 TCGA-66-2785-01 12 5756893 5756893 C A ANO2 Missense_Mutation p.M540I 0.09 deleterious(0) benign(0.279) TCGA-66-2785-01 12 57857804 57857804 C A GLI1 Nonsense_Mutation p.C41* 0.13 TCGA-66-2785-01 12 58127952 58127952 G A AGAP2 Missense_Mutation p.S469L 0.13 deleterious(0) possibly_damaging(0.476) TCGA-66-2785-01 12 62790074 62790074 G A USP15 Splice_Site p.X857_splice 0.29 TCGA-66-2785-01 12 62931381 62931381 G T MON2 Splice_Site p.X672_splice 0.26 TCGA-66-2785-01 12 64587969 64587969 G C C12orf66 Missense_Mutation p.H331D 0.17 deleterious(0.01) probably_damaging(0.96) TCGA-66-2785-01 12 65113896 65113896 C G GNS Missense_Mutation p.D496H 0.13 deleterious(0.02) possibly_damaging(0.85) TCGA-66-2785-01 12 6657950 6657950 G A IFFO1 Silent p.A374A 0.06 TCGA-66-2785-01 12 66849292 66849292 C G GRIP1 Silent p.L365L 0.17 TCGA-66-2785-01 12 68051554 68051554 G A DYRK2 Silent p.E289E 0.13 TCGA-66-2785-01 12 6886553 6886553 C G LAG3 Nonsense_Mutation p.S394* 0.10 TCGA-66-2785-01 12 6976808 6976808 C T TPI1 Silent p.I63I 0.06 TCGA-66-2785-01 12 72025649 72025649 C T ZFC3H1 Missense_Mutation p.D1127N 0.13 deleterious(0.01) probably_damaging(0.991) TCGA-66-2785-01 12 72332648 72332648 T C TPH2 5'UTR 0.27 TCGA-66-2785-01 12 7249728 7249728 C G C1RL Missense_Mutation p.Q241H 0.09 tolerated(0.06) benign(0.004) TCGA-66-2785-01 12 7651770 7651770 C G CD163 Missense_Mutation p.E158Q 0.06 tolerated(0.56) possibly_damaging(0.874) TCGA-66-2785-01 12 7803718 7803718 C A APOBEC1 Missense_Mutation p.R154S 0.05 deleterious(0.03) possibly_damaging(0.742) TCGA-66-2785-01 12 78598824 78598824 G T NAV3 Missense_Mutation p.R2293L 0.29 deleterious(0.03) probably_damaging(0.998) TCGA-66-2785-01 12 8051572 8051572 C A NANOGP1 RNA 0.26 TCGA-66-2785-01 12 81675037 81675037 G A PPFIA2 Nonsense_Mutation p.R1071* 0.31 TCGA-66-2785-01 12 8248226 8248226 C A NECAP1 Missense_Mutation p.P236T 0.04 tolerated(0.2) benign(0.002) TCGA-66-2785-01 12 85441104 85441104 G A LRRIQ1 Silent p.Q178Q 0.13 TCGA-66-2785-01 12 89861417 89861417 C A POC1B Missense_Mutation p.A286S 0.05 tolerated(0.16) benign(0.047) TCGA-66-2785-01 12 91498030 91498030 C A LUM Missense_Mutation p.R310L 0.14 deleterious(0) probably_damaging(1) TCGA-66-2785-01 12 93863109 93863109 G C MRPL42 Missense_Mutation p.L16F 0.17 tolerated_low_confidence(0.13) possibly_damaging(0.526) TCGA-66-2785-01 12 94976028 94976028 G A TMCC3 Missense_Mutation p.S122L 0.16 deleterious(0.02) benign(0.241) TCGA-66-2785-01 12 95676299 95676299 G A VEZT Missense_Mutation p.E403K 0.29 deleterious(0) probably_damaging(0.94) TCGA-66-2785-01 12 9747874 9747874 G C KLRB1 Missense_Mutation p.S225C 0.08 deleterious(0) possibly_damaging(0.737) TCGA-66-2785-01 13 103296993 103296993 G T TPP2 Silent p.G754G 0.17 TCGA-66-2785-01 13 103309403 103309403 T C TPP2 Intron 0.34 TCGA-66-2785-01 13 113730391 113730391 G C MCF2L Missense_Mutation p.E474Q 0.22 tolerated(0.06) possibly_damaging(0.826) TCGA-66-2785-01 13 115009418 115009418 C A CDC16 Missense_Mutation p.H241N 0.18 tolerated(0.32) benign(0.054) TCGA-66-2785-01 13 19751250 19751250 G A TUBA3C Silent p.I291I 0.15 TCGA-66-2785-01 13 23912025 23912025 G C SACS Missense_Mutation p.S1997C 0.19 benign(0.001) TCGA-66-2785-01 13 27333804 27333804 G C GPR12 Missense_Mutation p.S54W 0.22 deleterious(0) probably_damaging(0.998) TCGA-66-2785-01 13 28964033 28964033 G C FLT1 Missense_Mutation p.I623M 0.23 deleterious(0.04) possibly_damaging(0.905) TCGA-66-2785-01 13 29599656 29599656 C A MTUS2 Missense_Mutation p.T284K 0.14 deleterious(0.05) benign(0.003) TCGA-66-2785-01 13 31711278 31711278 C A HSPH1 3'UTR 0.11 TCGA-66-2785-01 13 35644898 35644898 C T NBEA Missense_Mutation p.H494Y 0.43 deleterious(0) probably_damaging(0.998) TCGA-66-2785-01 13 39433451 39433451 G C FREM2 Missense_Mutation p.D2415H 0.20 deleterious(0.02) possibly_damaging(0.698) TCGA-66-2785-01 13 42873499 42873499 G C AKAP11 Missense_Mutation p.G206A 0.27 tolerated(0.1) benign(0.387) TCGA-66-2785-01 13 52742256 52742256 C T MRPS31P5 RNA 0.32 TCGA-66-2785-01 13 73649905 73649905 G C KLF5 Missense_Mutation p.E419Q 0.13 deleterious(0) probably_damaging(0.988) TCGA-66-2785-01 13 77695532 77695532 C G MYCBP2 Missense_Mutation p.D2668H 0.05 probably_damaging(0.998) TCGA-66-2785-01 13 88329935 88329935 C T SLITRK5 Silent p.I764I 0.16 TCGA-66-2785-01 13 96237022 96237022 C - DZIP1 Frame_Shift_Del p.G831Afs*21 0.33 TCGA-66-2785-01 14 101526956 101526956 T C MIR496 RNA 0.19 TCGA-66-2785-01 14 102481630 102481630 A C DYNC1H1 Missense_Mutation p.K2401N 0.08 benign(0.028) TCGA-66-2785-01 14 104472825 104472825 C G TDRD9 Missense_Mutation p.Q605E 0.18 tolerated(0.06) benign(0.012) TCGA-66-2785-01 14 105415937 105415937 G C AHNAK2 Missense_Mutation p.L1951V 0.15 benign(0.003) TCGA-66-2785-01 14 105420834 105420834 C G AHNAK2 Missense_Mutation p.Q318H 0.17 possibly_damaging(0.717) TCGA-66-2785-01 14 105905016 105905016 C G MTA1 Silent p.V12V 0.16 TCGA-66-2785-01 14 106109564 106109564 G T IGHG2 Missense_Mutation p.S319R 0.21 deleterious(0) possibly_damaging(0.741) TCGA-66-2785-01 14 106207834 106207834 G T IGHG1 Missense_Mutation p.S323R 0.12 deleterious(0) possibly_damaging(0.563) TCGA-66-2785-01 14 21058430 21058430 G C RNASE12 3'UTR 0.10 TCGA-66-2785-01 14 21109424 21109424 A C OR6S1 Missense_Mutation p.C143G 0.12 deleterious(0) possibly_damaging(0.763) TCGA-66-2785-01 14 21359978 21359978 C G RNASE3 Missense_Mutation p.L45V 0.16 tolerated(0.3) benign(0.001) TCGA-66-2785-01 14 21500246 21500246 T C TPPP2 3'UTR 0.10 TCGA-66-2785-01 14 21552086 21552086 G A ARHGEF40 Silent p.L1222L 0.14 TCGA-66-2785-01 14 22265790 22265790 C A TRAV8-1 Missense_Mutation p.Q25K 0.15 deleterious(0) probably_damaging(0.999) TCGA-66-2785-01 14 22694873 22694873 G C TRAV36DV7 Missense_Mutation p.E22Q 0.13 tolerated(0.37) benign(0.129) TCGA-66-2785-01 14 22968719 22968719 G A TRAJ40 Silent p.L16L 0.16 TCGA-66-2785-01 14 23393852 23393852 G A PRMT5 Nonsense_Mutation p.Q336* 0.08 TCGA-66-2785-01 14 24030804 24030804 C T AP1G2 Missense_Mutation p.G592S 0.06 tolerated(0.46) benign(0.002) TCGA-66-2785-01 14 24614467 24614467 G C PSME2 Missense_Mutation p.Q83E 0.13 tolerated(1) benign(0) TCGA-66-2785-01 14 24723420 24723420 G A TGM1 Silent p.L721L 0.20 TCGA-66-2785-01 14 31354661 31354661 G C COCH Silent p.G265G 0.11 TCGA-66-2785-01 14 31355340 31355340 C T COCH Silent p.V433V 0.12 TCGA-66-2785-01 14 32559803 32559803 G C ARHGAP5 5'UTR 0.15 TCGA-66-2785-01 14 33201844 33201844 A G AKAP6 Intron 0.11 TCGA-66-2785-01 14 35263991 35263991 C G BAZ1A Missense_Mutation p.D443H 0.08 deleterious(0) probably_damaging(0.998) TCGA-66-2785-01 14 35295249 35295249 G C BAZ1A Nonsense_Mutation p.S169* 0.19 TCGA-66-2785-01 14 36986504 36986504 C T NKX2-1 Silent p.L395L 0.19 TCGA-66-2785-01 14 36989342 36989342 C T NKX2-1 5'UTR 0.15 TCGA-66-2785-01 14 39649715 39649715 G C PNN Missense_Mutation p.E268Q 0.10 tolerated(0.06) possibly_damaging(0.581) TCGA-66-2785-01 14 39722273 39722273 A T MIA2 Splice_Site p.X596_splice 0.30 TCGA-66-2785-01 14 44975997 44975997 C A FSCB Missense_Mutation p.G65V 0.13 tolerated(0.24) possibly_damaging(0.69) TCGA-66-2785-01 14 50053095 50053095 G A RPS29 5'Flank 0.10 TCGA-66-2785-01 14 50176427 50176427 G A KLHDC1 Nonsense_Mutation p.W56* 0.20 TCGA-66-2785-01 14 51223634 51223634 C G NIN Missense_Mutation p.E1372Q 0.20 tolerated(0.1) benign(0.046) TCGA-66-2785-01 14 51224085 51224085 T A NIN Missense_Mutation p.K1221N 0.16 tolerated(0.28) probably_damaging(0.999) TCGA-66-2785-01 14 53521243 53521243 C G DDHD1 Missense_Mutation p.E784Q 0.13 tolerated(0.09) possibly_damaging(0.653) TCGA-66-2785-01 14 55475034 55475034 C A WDHD1 Missense_Mutation p.Q168H 0.16 deleterious(0.04) possibly_damaging(0.804) TCGA-66-2785-01 14 55510378 55510378 G C SOCS4 Missense_Mutation p.E207Q 0.15 tolerated(0.39) benign(0) TCGA-66-2785-01 14 55510516 55510516 G T SOCS4 Missense_Mutation p.D253Y 0.19 deleterious(0.04) benign(0.343) TCGA-66-2785-01 14 58701237 58701237 C T ACTR10 Silent p.L408L 0.16 TCGA-66-2785-01 14 59835621 59835621 C G DAAM1 3'UTR 0.13 TCGA-66-2785-01 14 59951017 59951017 C T L3HYPDH Silent p.A6A 0.18 TCGA-66-2785-01 14 61180302 61180302 C A SIX4 Missense_Mutation p.E723D 0.15 deleterious_low_confidence(0.04) benign(0.004) TCGA-66-2785-01 14 64644158 64644158 C T SYNE2 Missense_Mutation p.P5838L 0.18 probably_damaging(0.999) TCGA-66-2785-01 14 69263020 69263020 C G ZFP36L1 5'Flank 0.12 TCGA-66-2785-01 14 71444958 71444958 C G PCNX Missense_Mutation p.S635C 0.14 deleterious(0) probably_damaging(0.998) TCGA-66-2785-01 14 73190343 73190343 G A DPF3 Missense_Mutation p.R175W 0.17 deleterious(0) probably_damaging(0.942) TCGA-66-2785-01 14 74340877 74340877 G T PTGR2 Missense_Mutation p.W103L 0.09 deleterious(0) possibly_damaging(0.746) TCGA-66-2785-01 14 74516731 74516731 G C CCDC176 Missense_Mutation p.Q373H 0.12 deleterious(0) possibly_damaging(0.847) TCGA-66-2785-01 14 75151330 75151330 C G AREL1 Missense_Mutation p.E24Q 0.13 tolerated_low_confidence(0.19) probably_damaging(0.986) TCGA-66-2785-01 14 75266158 75266158 G - YLPM1 Frame_Shift_Del p.K1386Nfs*44 0.19 TCGA-66-2785-01 14 75574085 75574085 G A NEK9 Nonsense_Mutation p.Q430* 0.17 TCGA-66-2785-01 14 77732898 77732898 C G NGB Missense_Mutation p.R146P 0.10 deleterious(0.01) possibly_damaging(0.668) TCGA-66-2785-01 14 77808183 77808183 G C TMED8 Silent p.L303L 0.13 TCGA-66-2785-01 14 77948773 77948773 C G ISM2 Missense_Mutation p.E289Q 0.21 tolerated(0.06) possibly_damaging(0.727) TCGA-66-2785-01 14 91110546 91110546 C G TTC7B Missense_Mutation p.E533Q 0.17 tolerated(0.05) possibly_damaging(0.848) TCGA-66-2785-01 14 91779949 91779949 C A CCDC88C Missense_Mutation p.K737N 0.32 deleterious(0.03) possibly_damaging(0.881) TCGA-66-2785-01 14 94084612 94084612 G T UNC79 Silent p.A1256A 0.12 TCGA-66-2785-01 14 94158226 94158226 G A UNC79 Silent p.L2330L 0.14 TCGA-66-2785-01 14 94578051 94578051 C T IFI27 Missense_Mutation p.S8L 0.20 deleterious_low_confidence(0) unknown(0) TCGA-66-2785-01 14 95669505 95669505 G C CLMN Missense_Mutation p.F727L 0.26 deleterious(0) possibly_damaging(0.706) TCGA-66-2785-01 14 95670395 95670395 C G CLMN Missense_Mutation p.D431H 0.12 deleterious(0) probably_damaging(0.919) TCGA-66-2785-01 14 96937902 96937902 G A AK7 Missense_Mutation p.G482E 0.05 deleterious(0) probably_damaging(1) TCGA-66-2785-01 14 99865289 99865289 C G SETD3 Missense_Mutation p.E504D 0.17 tolerated(0.06) benign(0) TCGA-66-2785-01 15 100996212 100996212 G C CERS3 Silent p.L295L 0.22 TCGA-66-2785-01 15 101464721 101464721 G C LRRK1 5'UTR 0.24 TCGA-66-2785-01 15 101905241 101905241 C G PCSK6 Intron 0.19 TCGA-66-2785-01 15 102190535 102190535 C T TM2D3 Intron 0.21 TCGA-66-2785-01 15 20489437 20489437 G C CHEK2P2 RNA 0.08 TCGA-66-2785-01 15 22962537 22962537 A T CYFIP1 Missense_Mutation p.R753W 0.12 deleterious(0) probably_damaging(0.992) TCGA-66-2785-01 15 23890133 23890133 C G MAGEL2 Silent p.L316L 0.16 TCGA-66-2785-01 15 23931634 23931634 T C NDN Missense_Mutation p.Y244C 0.28 deleterious(0) probably_damaging(0.999) TCGA-66-2785-01 15 23931908 23931908 G T NDN Missense_Mutation p.L153M 0.21 deleterious(0.03) probably_damaging(1) TCGA-66-2785-01 15 25432748 25432748 G A SNORD115-10 RNA 0.17 TCGA-66-2785-01 15 28228542 28228542 G A OCA2 Silent p.I484I 0.12 TCGA-66-2785-01 15 30918904 30918904 G T ARHGAP11B 5'UTR 0.21 TCGA-66-2785-01 15 33359865 33359865 G T FMN1 Missense_Mutation p.S74Y 0.15 deleterious_low_confidence(0.02) unknown(0) TCGA-66-2785-01 15 35529664 35529664 C T ANP32AP1 RNA 0.14 TCGA-66-2785-01 15 40902467 40902467 G C CASC5 Missense_Mutation p.M74I 0.18 deleterious(0.02) benign(0.051) TCGA-66-2785-01 15 40912985 40912985 A C CASC5 Missense_Mutation p.T201P 0.13 tolerated(0.08) benign(0.01) TCGA-66-2785-01 15 41146845 41146845 G C SPINT1 Missense_Mutation p.G375R 0.19 tolerated(0.12) possibly_damaging(0.714) TCGA-66-2785-01 15 41799459 41799459 C G LTK Missense_Mutation p.E459Q 0.24 tolerated_low_confidence(0.23) benign(0) TCGA-66-2785-01 15 42192959 42192959 A C EHD4 Missense_Mutation p.F504V 0.33 deleterious(0) probably_damaging(0.998) TCGA-66-2785-01 15 43044761 43044761 C G TTBK2 Missense_Mutation p.D895H 0.21 deleterious_low_confidence(0.04) possibly_damaging(0.606) TCGA-66-2785-01 15 43661911 43661911 C G ZSCAN29 Silent p.L67L 0.15 TCGA-66-2785-01 15 43821418 43821418 G A MAP1A Missense_Mutation p.E2583K 0.15 probably_damaging(0.996) TCGA-66-2785-01 15 44090668 44090668 G C SERINC4 Missense_Mutation p.L165V 0.12 deleterious(0.01) possibly_damaging(0.605) TCGA-66-2785-01 15 44855183 44855183 T C SPG11 3'UTR 0.13 TCGA-66-2785-01 15 44943814 44943814 T C SPG11 Missense_Mutation p.E444G 0.12 tolerated(0.43) benign(0.003) TCGA-66-2785-01 15 51828679 51828679 C G DMXL2 Missense_Mutation p.L666F 0.17 deleterious(0) probably_damaging(1) TCGA-66-2785-01 15 54847657 54847657 G C UNC13C Missense_Mutation p.G1969R 0.13 deleterious_low_confidence(0) benign(0.209) TCGA-66-2785-01 15 55611485 55611485 G C PIGB Missense_Mutation p.G13R 0.18 tolerated_low_confidence(0.44) benign(0.02) TCGA-66-2785-01 15 63356324 63356324 C G TPM1 Intron 0.10 TCGA-66-2785-01 15 64967613 64967613 G T ZNF609 Missense_Mutation p.D854Y 0.16 deleterious(0) probably_damaging(1) TCGA-66-2785-01 15 65235752 65235752 G T ANKDD1A Missense_Mutation p.G347W 0.16 deleterious(0) probably_damaging(1) TCGA-66-2785-01 15 65793003 65793003 G C DPP8 Missense_Mutation p.L179V 0.18 tolerated(0.68) probably_damaging(0.997) TCGA-66-2785-01 15 66793360 66793360 C T RPL4 Missense_Mutation p.E254K 0.14 tolerated(0.4) benign(0.21) TCGA-66-2785-01 15 68583629 68583629 C T FEM1B 3'UTR 0.20 TCGA-66-2785-01 15 74573101 74573101 A G CCDC33 Missense_Mutation p.K328E 0.16 deleterious(0.05) possibly_damaging(0.801) TCGA-66-2785-01 15 74627443 74627443 C A CCDC33 Intron 0.34 TCGA-66-2785-01 15 75652298 75652298 C T MAN2C1 Missense_Mutation p.V580M 0.17 tolerated(0.11) benign(0.381) TCGA-66-2785-01 15 78922232 78922232 C A CHRNB4 Missense_Mutation p.G139C 0.23 deleterious(0) probably_damaging(1) TCGA-66-2785-01 15 83933054 83933054 T C BNC1 Missense_Mutation p.S317G 0.32 tolerated(0.42) benign(0.001) TCGA-66-2785-01 15 85326210 85326210 C T ZNF592 Missense_Mutation p.P102S 0.29 tolerated(0.88) benign(0.005) TCGA-66-2785-01 15 85478750 85478750 G A SLC28A1 Splice_Site p.X527_splice 0.38 TCGA-66-2785-01 15 86807964 86807964 C A AGBL1 Missense_Mutation p.T475N 0.32 deleterious(0) probably_damaging(0.953) TCGA-66-2785-01 15 89074044 89074044 C A DET1 Missense_Mutation p.R309L 0.14 deleterious(0) probably_damaging(0.997) TCGA-66-2785-01 15 89744983 89744983 G C ABHD2 3'UTR 0.15 TCGA-66-2785-01 15 90149999 90149999 G C TICRR Missense_Mutation p.E889Q 0.09 deleterious(0) benign(0.406) TCGA-66-2785-01 15 90996132 90996132 C G IQGAP1 Missense_Mutation p.Q430E 0.07 deleterious(0.04) possibly_damaging(0.521) TCGA-66-2785-01 15 91827444 91827444 G C SV2B Missense_Mutation p.K567N 0.17 tolerated(0.14) probably_damaging(0.948) TCGA-66-2785-01 16 1257399 1257399 T C CACNA1H Missense_Mutation p.V1011A 0.14 deleterious(0) probably_damaging(0.996) TCGA-66-2785-01 16 14026042 14026042 G A ERCC4 Silent p.S334S 0.15 TCGA-66-2785-01 16 15702352 15702352 C G KIAA0430 Missense_Mutation p.K1326N 0.17 deleterious(0) probably_damaging(0.999) TCGA-66-2785-01 16 16205279 16205279 C A ABCC1 Missense_Mutation p.F973L 0.17 tolerated(0.64) benign(0.004) TCGA-66-2785-01 16 20636813 20636813 C T ACSM1 Missense_Mutation p.A487T 0.16 deleterious(0.01) probably_damaging(0.925) TCGA-66-2785-01 16 2223818 2223818 G A TRAF7 Silent p.L372L 0.07 TCGA-66-2785-01 16 2257038 2257038 C T MLST8 Missense_Mutation p.S116F 0.24 deleterious(0) possibly_damaging(0.786) TCGA-66-2785-01 16 2260557 2260557 C G BRICD5 Missense_Mutation p.G49A 0.17 tolerated(0.44) probably_damaging(0.996) TCGA-66-2785-01 16 2260649 2260649 C G BRICD5 Silent p.V18V 0.40 TCGA-66-2785-01 16 24788259 24788259 G C TNRC6A Missense_Mutation p.E57Q 0.13 deleterious(0) probably_damaging(0.932) TCGA-66-2785-01 16 24902291 24902291 G A SLC5A11 Missense_Mutation p.D256N 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-66-2785-01 16 27221543 27221543 G C KDM8 Silent p.L71L 0.13 TCGA-66-2785-01 16 27363887 27363887 A G IL4R Silent p.L180L 0.24 TCGA-66-2785-01 16 2814714 2814714 G A SRRM2 Silent p.G1395G 0.42 TCGA-66-2785-01 16 2818169 2818169 C G SRRM2 Nonsense_Mutation p.S2547* 0.15 TCGA-66-2785-01 16 28914161 28914161 C T ATP2A1 Silent p.F891F 0.23 TCGA-66-2785-01 16 30409555 30409555 G A ZNF48 Silent p.E328E 0.15 TCGA-66-2785-01 16 31091514 31091514 G A ZNF646 Missense_Mutation p.R1290Q 0.16 tolerated(0.35) benign(0.008) TCGA-66-2785-01 16 31091695 31091695 G C ZNF646 Missense_Mutation p.E1350D 0.12 tolerated(0.31) benign(0.007) TCGA-66-2785-01 16 31098057 31098057 G C PRSS53 Silent p.A135A 0.17 TCGA-66-2785-01 16 31150511 31150511 G T PRSS36 Missense_Mutation p.S839Y 0.16 deleterious_low_confidence(0) possibly_damaging(0.494) TCGA-66-2785-01 16 3115776 3115776 C A IL32 Intron 0.12 TCGA-66-2785-01 16 3304485 3304485 C G MEFV Missense_Mutation p.E195Q 0.14 tolerated(0.5) benign(0.003) TCGA-66-2785-01 16 3367379 3367379 G C ZNF75A Missense_Mutation p.R134T 0.15 tolerated(0.07) benign(0.021) TCGA-66-2785-01 16 3367399 3367399 A C ZNF75A Missense_Mutation p.K141Q 0.10 deleterious(0.01) possibly_damaging(0.558) TCGA-66-2785-01 16 3433224 3433224 C G ZSCAN32 Missense_Mutation p.E362D 0.13 deleterious(0) possibly_damaging(0.602) TCGA-66-2785-01 16 4164000 4164000 C G ADCY9 Missense_Mutation p.E482Q 0.19 deleterious(0.01) probably_damaging(0.943) TCGA-66-2785-01 16 46931634 46931634 C T GPT2 Silent p.I106I 0.46 TCGA-66-2785-01 16 49315307 49315307 C G CBLN1 Missense_Mutation p.E24Q 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.501) TCGA-66-2785-01 16 50348317 50348317 G T ADCY7 Missense_Mutation p.G991C 0.47 deleterious(0) probably_damaging(1) TCGA-66-2785-01 16 50655581 50655581 G A NKD1 Missense_Mutation p.E110K 0.13 tolerated(0.64) benign(0.176) TCGA-66-2785-01 16 50821699 50821699 C A CYLD Missense_Mutation p.P682T 0.35 deleterious(0) probably_damaging(1) TCGA-66-2785-01 16 51175747 51175747 G T SALL1 Missense_Mutation p.A129D 0.48 tolerated(0.27) benign(0.355) TCGA-66-2785-01 16 553072 553072 G C RAB11FIP3 Missense_Mutation p.G457A 0.15 tolerated(0.38) benign(0.002) TCGA-66-2785-01 16 67214480 67214480 G C KIAA0895L Missense_Mutation p.Q12E 0.18 tolerated_low_confidence(0.16) benign(0.002) TCGA-66-2785-01 16 67264021 67264021 C G FHOD1 Missense_Mutation p.K1054N 0.15 deleterious(0.01) possibly_damaging(0.597) TCGA-66-2785-01 16 67314196 67314196 G C PLEKHG4 Missense_Mutation p.Q83H 0.10 tolerated(0.08) benign(0.002) TCGA-66-2785-01 16 67409289 67409289 C G LRRC36 Missense_Mutation p.S545C 0.22 deleterious(0) probably_damaging(0.999) TCGA-66-2785-01 16 67980942 67980942 G C SLC12A4 Silent p.T715T 0.13 TCGA-66-2785-01 16 69199280 69199280 G T CIRH1A Missense_Mutation p.D562Y 0.14 deleterious(0.02) possibly_damaging(0.648) TCGA-66-2785-01 16 69704136 69704136 C A NFAT5 Intron 0.22 TCGA-66-2785-01 16 723721 723721 G T RHOT2 3'UTR 0.50 TCGA-66-2785-01 16 75512624 75512624 C G CHST6 Missense_Mutation p.R368P 0.50 deleterious(0) possibly_damaging(0.448) TCGA-66-2785-01 16 75642805 75642805 C G ADAT1 Missense_Mutation p.Q375H 0.18 tolerated(1) benign(0.094) TCGA-66-2785-01 16 75642880 75642880 C G ADAT1 Missense_Mutation p.Q350H 0.19 tolerated(0.09) benign(0.038) TCGA-66-2785-01 16 815722 815722 C T MSLN Missense_Mutation p.S276F 0.12 tolerated(0.22) possibly_damaging(0.707) TCGA-66-2785-01 16 837161 837161 C G RPUSD1 Missense_Mutation p.E109Q 0.09 tolerated(0.43) benign(0.063) TCGA-66-2785-01 16 84514298 84514298 T C TLDC1 Missense_Mutation p.H365R 0.31 deleterious(0) probably_damaging(0.932) TCGA-66-2785-01 16 88945803 88945803 C G CBFA2T3 Missense_Mutation p.E513Q 0.12 deleterious(0) probably_damaging(0.99) TCGA-66-2785-01 16 89293455 89293455 G A ZNF778 Nonsense_Mutation p.W225* 0.14 TCGA-66-2785-01 16 89783081 89783081 G C VPS9D1 Intron 0.19 TCGA-66-2785-01 17 10231375 10231375 C G MYH13 Missense_Mutation p.W833C 0.32 deleterious(0) probably_damaging(0.942) TCGA-66-2785-01 17 10417367 10417367 C A MYH1 Missense_Mutation p.G203V 0.38 deleterious(0.01) probably_damaging(0.96) TCGA-66-2785-01 17 12666889 12666889 C G MYOCD Missense_Mutation p.F963L 0.34 deleterious(0) probably_damaging(0.995) TCGA-66-2785-01 17 15517212 15517212 G T RP11-385D13.1 Missense_Mutation p.S579Y 0.15 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-66-2785-01 17 18775920 18775920 C G PRPSAP2 Missense_Mutation p.S66C 0.17 deleterious(0) probably_damaging(0.988) TCGA-66-2785-01 17 2604712 2604712 C T CLUH Missense_Mutation p.E245K 0.38 deleterious(0) probably_damaging(0.934) TCGA-66-2785-01 17 33323664 33323664 G A LIG3 Silent p.L605L 0.18 TCGA-66-2785-01 17 3665221 3665221 G T ITGAE Missense_Mutation p.H101Q 0.30 tolerated(0.24) benign(0.025) TCGA-66-2785-01 17 40825296 40825296 C G PLEKHH3 Missense_Mutation p.E223Q 0.18 deleterious(0) unknown(0) TCGA-66-2785-01 17 4085544 4085544 C G ANKFY1 Missense_Mutation p.D727H 0.19 deleterious(0) probably_damaging(0.935) TCGA-66-2785-01 17 42513912 42513912 C T GPATCH8 Silent p.G65G 0.40 TCGA-66-2785-01 17 42743862 42743862 T G C17orf104 Missense_Mutation p.F195V 0.20 deleterious(0.02) possibly_damaging(0.506) TCGA-66-2785-01 17 43339397 43339397 C G SPATA32 5'UTR 0.11 TCGA-66-2785-01 17 43531171 43531171 C G PLEKHM1 Missense_Mutation p.D683H 0.15 deleterious(0) probably_damaging(0.947) TCGA-66-2785-01 17 46700471 46700471 C T HOXB9 Missense_Mutation p.A182T 0.17 deleterious(0) possibly_damaging(0.832) TCGA-66-2785-01 17 4689561 4689561 C G VMO1 Silent p.R29R 0.11 TCGA-66-2785-01 17 48263143 48263143 C A COL1A1 Missense_Mutation p.C1415F 0.18 benign(0.126) TCGA-66-2785-01 17 48616632 48616632 G C EPN3 Missense_Mutation p.E283Q 0.15 tolerated(0.58) benign(0.004) TCGA-66-2785-01 17 54428250 54428250 G A ANKFN1 Silent p.L107L 0.17 TCGA-66-2785-01 17 55027748 55027748 A T COIL Silent p.S285S 0.16 TCGA-66-2785-01 17 57208656 57208656 C G SKA2 Missense_Mutation p.D36H 0.17 tolerated(0.05) benign(0.191) TCGA-66-2785-01 17 60023815 60023815 C G MED13 3'UTR 0.10 TCGA-66-2785-01 17 61574285 61574287 GGA - ACE In_Frame_Del p.E1211del 0.36 TCGA-66-2785-01 17 62081218 62081218 G C ICAM2 Silent p.L145L 0.17 TCGA-66-2785-01 17 63221470 63221470 G C RGS9 Silent p.L586L 0.10 TCGA-66-2785-01 17 63898434 63898434 C G CEP112 Missense_Mutation p.E667Q 0.13 tolerated(0.33) probably_damaging(0.945) TCGA-66-2785-01 17 65467626 65467626 G C PITPNC1 Intron 0.17 TCGA-66-2785-01 17 66992106 66992106 A G ABCA9 Missense_Mutation p.L1162P 0.15 tolerated(0.28) benign(0.005) TCGA-66-2785-01 17 72285829 72285829 G T DNAI2 Missense_Mutation p.Q188H 0.16 deleterious(0) probably_damaging(0.94) TCGA-66-2785-01 17 7324338 7324338 G A SPEM1 Missense_Mutation p.R115Q 0.17 tolerated(0.19) probably_damaging(0.947) TCGA-66-2785-01 17 73499763 73499763 C T CASKIN2 Missense_Mutation p.E553K 0.26 deleterious(0) benign(0.079) TCGA-66-2785-01 17 73702643 73702643 A G SAP30BP 3'UTR 0.26 TCGA-66-2785-01 17 74011346 74011346 C T EVPL Missense_Mutation p.E664K 0.14 tolerated(0.89) benign(0.021) TCGA-66-2785-01 17 74148493 74148493 C G RNF157 Missense_Mutation p.D622H 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.576) TCGA-66-2785-01 17 74570505 74570505 G C ST6GALNAC2 Silent p.L101L 0.12 TCGA-66-2785-01 17 7498076 7498076 C G FXR2 Splice_Site p.X278_splice 0.14 TCGA-66-2785-01 17 7578544 7578545 - A TP53 Frame_Shift_Ins p.A129Vfs*20 0.18 TCGA-66-2785-01 17 76433779 76433779 C G DNAH17 Missense_Mutation p.E3987Q 0.27 probably_damaging(0.997) TCGA-66-2785-01 17 76869934 76869934 G C TIMP2 Missense_Mutation p.I66M 0.24 tolerated(0.11) probably_damaging(0.963) TCGA-66-2785-01 17 7695336 7695336 G C DNAH2 Silent p.R2334R 0.16 TCGA-66-2785-01 17 7751800 7751800 C G KDM6B Missense_Mutation p.L732V 0.24 unknown(0) TCGA-66-2785-01 17 7760009 7760009 C G LSMD1 3'UTR 0.15 TCGA-66-2785-01 17 78021137 78021137 C G CCDC40 Missense_Mutation p.F204L 0.14 tolerated(0.9) benign(0.003) TCGA-66-2785-01 17 78272248 78272248 C G RNF213 Missense_Mutation p.Q714E 0.22 benign(0.152) TCGA-66-2785-01 17 79077806 79077806 A G BAIAP2 Missense_Mutation p.K322E 0.23 tolerated(0.2) benign(0.134) TCGA-66-2785-01 17 79477708 79477708 G A ACTG1 3'UTR 0.22 TCGA-66-2785-01 17 79994269 79994269 C G DCXR Silent p.G168G 0.17 TCGA-66-2785-01 17 80430437 80430437 C T NARF Intron 0.40 TCGA-66-2785-01 17 80897338 80897338 C G TBCD Silent p.L1155L 0.15 TCGA-66-2785-01 17 9830003 9830003 G A GAS7 Silent p.A323A 0.13 TCGA-66-2785-01 18 14479197 14479197 T G CXADRP3 RNA 0.42 TCGA-66-2785-01 18 19780785 19780785 G C GATA6 Nonstop_Mutation p.*596Sext*55 0.18 TCGA-66-2785-01 18 21913048 21913048 G A OSBPL1A Silent p.L161L 0.18 TCGA-66-2785-01 18 22805569 22805569 C T ZNF521 Silent p.V771V 0.09 TCGA-66-2785-01 18 23619391 23619391 G C SS18 Missense_Mutation p.Q213E 0.13 deleterious_low_confidence(0.05) probably_damaging(0.949) TCGA-66-2785-01 18 44627345 44627345 C T KATNAL2 Missense_Mutation p.S457L 0.19 tolerated(0.33) benign(0.001) TCGA-66-2785-01 18 48450551 48450551 A G ME2 Silent p.A380A 0.19 TCGA-66-2785-01 18 56205344 56205344 G C ALPK2 Nonsense_Mutation p.S692* 0.23 TCGA-66-2785-01 18 74091239 74091239 G A ZNF516 Missense_Mutation p.S944L 0.20 tolerated(0.13) benign(0.001) TCGA-66-2785-01 19 10203565 10203565 G A C19orf66 3'UTR 0.23 TCGA-66-2785-01 19 10224736 10224736 G C PPAN-P2RY11 Silent p.V569V 0.14 TCGA-66-2785-01 19 1036486 1036486 C G CNN2 Silent p.P193P 0.11 TCGA-66-2785-01 19 10395132 10395132 G A ICAM1 Missense_Mutation p.E327K 0.06 tolerated(0.83) benign(0.057) TCGA-66-2785-01 19 10403472 10403472 C G ICAM5 Missense_Mutation p.F382L 0.09 tolerated(0.23) benign(0.005) TCGA-66-2785-01 19 10657529 10657529 G A ATG4D Missense_Mutation p.E170K 0.06 tolerated(0.08) benign(0.006) TCGA-66-2785-01 19 11034586 11034586 C G YIPF2 Missense_Mutation p.E192Q 0.06 tolerated(0.64) possibly_damaging(0.756) TCGA-66-2785-01 19 11215973 11215973 G C LDLR Missense_Mutation p.D131H 0.12 deleterious(0.01) probably_damaging(0.985) TCGA-66-2785-01 19 11280562 11280562 G C KANK2 Missense_Mutation p.I839M 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-66-2785-01 19 11517430 11517430 C T RGL3 Missense_Mutation p.E250K 0.06 tolerated(0.86) possibly_damaging(0.889) TCGA-66-2785-01 19 11917204 11917204 T C ZNF491 Missense_Mutation p.Y146H 0.19 deleterious(0.01) probably_damaging(0.953) TCGA-66-2785-01 19 1255491 1255491 C T MIDN Silent p.I309I 0.23 TCGA-66-2785-01 19 14703135 14703135 C G CLEC17A Nonsense_Mutation p.S81* 0.17 TCGA-66-2785-01 19 15465941 15465941 C T AKAP8 Missense_Mutation p.E622K 0.15 tolerated(0.11) benign(0.006) TCGA-66-2785-01 19 15575156 15575156 G T RASAL3 Nonsense_Mutation p.S5* 0.36 TCGA-66-2785-01 19 15839699 15839699 C A OR10H2 Silent p.L282L 0.15 TCGA-66-2785-01 19 16641589 16641589 C A CHERP Missense_Mutation p.K259N 0.35 deleterious(0) probably_damaging(0.991) TCGA-66-2785-01 19 16910739 16910739 G A NWD1 Missense_Mutation p.E1168K 0.10 tolerated(0.12) benign(0.085) TCGA-66-2785-01 19 17312971 17312971 G C MYO9B Silent p.L1565L 0.16 TCGA-66-2785-01 19 17743637 17743637 C T UNC13A Missense_Mutation p.V1128M 0.30 deleterious(0.01) possibly_damaging(0.646) TCGA-66-2785-01 19 18313413 18313413 C A RAB3A Silent p.S46S 0.12 TCGA-66-2785-01 19 18423448 18423448 T C LSM4 Missense_Mutation p.N37S 0.32 deleterious(0) probably_damaging(0.998) TCGA-66-2785-01 19 19655002 19655002 G C CILP2 Missense_Mutation p.E550Q 0.11 deleterious(0.02) possibly_damaging(0.586) TCGA-66-2785-01 19 19655137 19655137 G C CILP2 Missense_Mutation p.D595H 0.12 deleterious(0) possibly_damaging(0.741) TCGA-66-2785-01 19 21719720 21719720 G C ZNF429 Missense_Mutation p.E289Q 0.10 deleterious(0.02) possibly_damaging(0.584) TCGA-66-2785-01 19 21910188 21910188 C G ZNF100 Missense_Mutation p.R309T 0.31 tolerated(0.37) benign(0.094) TCGA-66-2785-01 19 22154213 22154213 C A ZNF208 Missense_Mutation p.W1208L 0.17 tolerated(0.8) benign(0.001) TCGA-66-2785-01 19 22157406 22157406 C T ZNF208 Missense_Mutation p.V144I 0.13 tolerated(1) benign(0.003) TCGA-66-2785-01 19 22846700 22846700 G A ZNF492 Missense_Mutation p.E77K 0.24 tolerated(0.27) possibly_damaging(0.636) TCGA-66-2785-01 19 23836981 23836981 G A ZNF675 Nonsense_Mutation p.R252* 0.04 TCGA-66-2785-01 19 31770267 31770267 C T TSHZ3 Silent p.E144E 0.30 TCGA-66-2785-01 19 32844814 32844814 G C ZNF507 Missense_Mutation p.E360Q 0.13 tolerated(0.52) probably_damaging(0.932) TCGA-66-2785-01 19 33078016 33078016 G C PDCD5 Intron 0.14 TCGA-66-2785-01 19 33117720 33117720 G C ANKRD27 Silent p.L478L 0.20 TCGA-66-2785-01 19 36054161 36054161 G C ATP4A Missense_Mutation p.Q56E 0.03 tolerated(0.15) benign(0.001) TCGA-66-2785-01 19 36227820 36227820 G A KMT2B Nonsense_Mutation p.W2435* 0.12 TCGA-66-2785-01 19 37383109 37383109 C G ZNF829 Missense_Mutation p.R276P 0.38 tolerated(0.21) benign(0.24) TCGA-66-2785-01 19 38229665 38229665 G C ZNF573 Missense_Mutation p.H576D 0.12 deleterious(0) probably_damaging(0.987) TCGA-66-2785-01 19 38853195 38853195 C G CATSPERG Missense_Mutation p.F779L 0.12 tolerated(0.38) benign(0.294) TCGA-66-2785-01 19 38934255 38934255 C A RYR1 Missense_Mutation p.H110N 0.11 probably_damaging(1) TCGA-66-2785-01 19 38991553 38991553 G T RYR1 Nonsense_Mutation p.E2513* 0.15 TCGA-66-2785-01 19 40362766 40362766 G C FCGBP Missense_Mutation p.Q5102E 0.09 probably_damaging(0.949) TCGA-66-2785-01 19 40580841 40580841 C G ZNF780A Missense_Mutation p.C504S 0.03 deleterious(0) probably_damaging(0.988) TCGA-66-2785-01 19 41063159 41063159 C G SPTBN4 Missense_Mutation p.F1840L 0.28 deleterious(0.05) probably_damaging(0.994) TCGA-66-2785-01 19 41285940 41285940 C G RAB4B Missense_Mutation p.F11L 0.05 tolerated(0.07) benign(0.342) TCGA-66-2785-01 19 41707208 41707208 G T CYP2S1 Missense_Mutation p.G303W 0.15 deleterious(0) probably_damaging(1) TCGA-66-2785-01 19 42213743 42213743 G C CEA Missense_Mutation p.G70A 0.17 deleterious(0.01) probably_damaging(0.989) TCGA-66-2785-01 19 42910326 42910326 G C LIPE Silent p.V784V 0.14 TCGA-66-2785-01 19 43697434 43697434 C G PSG4 3'UTR 0.44 TCGA-66-2785-01 19 45452058 45452058 G C APOC2 Missense_Mutation p.K52N 0.50 deleterious(0.04) possibly_damaging(0.874) TCGA-66-2785-01 19 45803085 45803085 G C MARK4 Missense_Mutation p.E632Q 0.21 tolerated(0.09) benign(0.006) TCGA-66-2785-01 19 46971706 46971706 C A PNMAL1 3'UTR 0.14 TCGA-66-2785-01 19 47548655 47548655 C T NPAS1 Missense_Mutation p.P507S 0.61 tolerated(0.26) benign(0.016) TCGA-66-2785-01 19 49143373 49143373 G C CA11 Missense_Mutation p.N150K 0.09 deleterious(0.04) benign(0.399) TCGA-66-2785-01 19 49675295 49675295 C T TRPM4 Silent p.L360L 0.19 TCGA-66-2785-01 19 49675296 49675296 C T TRPM4 Silent p.L361L 0.18 TCGA-66-2785-01 19 51955867 51955867 C A SIGLEC8 Missense_Mutation p.W422C 0.19 tolerated(0.15) benign(0.008) TCGA-66-2785-01 19 52725424 52725424 G C PPP2R1A Missense_Mutation p.D531H 0.15 deleterious(0) probably_damaging(1) TCGA-66-2785-01 19 52920063 52920063 A G ZNF528 3'UTR 0.27 TCGA-66-2785-01 19 53667918 53667918 G T ZNF665 Missense_Mutation p.Q609K 0.20 tolerated(0.31) benign(0.238) TCGA-66-2785-01 19 54659157 54659157 C T LENG1 3'UTR 0.25 TCGA-66-2785-01 19 55147045 55147045 G A LILRB1 Silent p.V546V 0.21 TCGA-66-2785-01 19 55220848 55220848 C A AC098784.2 3'Flank 0.23 TCGA-66-2785-01 19 55396759 55396759 G A FCAR Missense_Mutation p.M61I 0.15 tolerated(0.41) benign(0.093) TCGA-66-2785-01 19 55666173 55666173 C A TNNI3 Missense_Mutation p.R103L 0.23 deleterious(0.04) benign(0.253) TCGA-66-2785-01 19 55671358 55671358 T C DNAAF3 Missense_Mutation p.T425A 0.10 tolerated(0.15) benign(0.073) TCGA-66-2785-01 19 55671359 55671359 G T DNAAF3 Missense_Mutation p.F424L 0.10 tolerated(0.12) possibly_damaging(0.835) TCGA-66-2785-01 19 56320296 56320297 - TG NLRP11 Frame_Shift_Ins p.I561Rfs*19 0.22 TCGA-66-2785-01 19 57133271 57133271 C T ZNF71 Missense_Mutation p.R206C 0.22 deleterious(0) probably_damaging(0.999) TCGA-66-2785-01 19 57325348 57325348 C T PEG3 Missense_Mutation p.E1488K 0.05 deleterious(0.03) possibly_damaging(0.731) TCGA-66-2785-01 19 58101644 58101644 G A ZIK1 Silent p.V155V 0.18 TCGA-66-2785-01 19 58265642 58265642 G A ZNF776 Missense_Mutation p.G382R 0.23 deleterious(0.03) possibly_damaging(0.814) TCGA-66-2785-01 19 6670147 6670147 T C TNFSF14 5'UTR 0.39 TCGA-66-2785-01 19 6754983 6754983 G T SH2D3A Missense_Mutation p.F280L 0.21 tolerated(0.09) benign(0.022) TCGA-66-2785-01 19 7141796 7141796 C G INSR Silent p.T858T 0.16 TCGA-66-2785-01 19 8530377 8530377 G T HNRNPM Missense_Mutation p.G203V 0.05 tolerated(0.11) probably_damaging(0.985) TCGA-66-2785-01 19 855618 855618 C G ELANE Missense_Mutation p.Q141E 0.31 tolerated(0.05) possibly_damaging(0.681) TCGA-66-2785-01 19 8651080 8651080 G A ADAMTS10 Silent p.A862A 0.08 TCGA-66-2785-01 19 8922163 8922163 G C ZNF558 Missense_Mutation p.L335V 0.06 deleterious(0) possibly_damaging(0.889) TCGA-66-2785-01 19 9009662 9009662 G A MUC16 Silent p.L13022L 0.08 TCGA-66-2785-01 19 9048215 9048215 G C MUC16 Nonsense_Mutation p.S11139* 0.06 TCGA-66-2785-01 19 9048822 9048822 G C MUC16 Missense_Mutation p.L10937V 0.07 possibly_damaging(0.801) TCGA-66-2785-01 19 9064726 9064726 C A MUC16 Missense_Mutation p.V7574F 0.05 unknown(0) TCGA-66-2785-01 19 9072073 9072073 C G MUC16 Missense_Mutation p.E5125Q 0.08 unknown(0) TCGA-66-2785-01 19 9085379 9085379 G C MUC16 Missense_Mutation p.L2146V 0.12 unknown(0) TCGA-66-2785-01 19 9086274 9086274 G T MUC16 Silent p.L1847L 0.14 TCGA-66-2785-01 19 9087316 9087316 G C MUC16 Nonsense_Mutation p.S1500* 0.13 TCGA-66-2785-01 19 9087418 9087418 G C MUC16 Missense_Mutation p.T1466R 0.14 unknown(0) TCGA-66-2785-01 19 9087899 9087899 C G MUC16 Missense_Mutation p.E1306Q 0.07 unknown(0) TCGA-66-2785-01 19 9087904 9087904 G A MUC16 Missense_Mutation p.S1304L 0.12 unknown(0) TCGA-66-2785-01 19 9088081 9088081 G C MUC16 Nonsense_Mutation p.S1245* 0.13 TCGA-66-2785-01 19 9089023 9089023 G C MUC16 Nonsense_Mutation p.S931* 0.16 TCGA-66-2785-01 19 9089301 9089301 G C MUC16 Silent p.L838L 0.16 TCGA-66-2785-01 19 9090194 9090194 G C MUC16 Missense_Mutation p.P541A 0.09 unknown(0) TCGA-66-2785-01 19 9091309 9091309 G A MUC16 Missense_Mutation p.S169L 0.05 unknown(0) TCGA-66-2785-01 19 9763789 9763789 G C ZNF562 Missense_Mutation p.Q373E 0.04 tolerated(1) benign(0.05) TCGA-66-2785-01 1 100671853 100671853 C G DBT Missense_Mutation p.G405A 0.22 deleterious(0) possibly_damaging(0.87) TCGA-66-2785-01 1 100818466 100818466 C G CDC14A 5'UTR 0.19 TCGA-66-2785-01 1 109197375 109197375 G A HENMT1 Missense_Mutation p.R121C 0.23 tolerated(0.21) benign(0.398) TCGA-66-2785-01 1 109391602 109391602 G C AKNAD1 Missense_Mutation p.Q372E 0.05 tolerated(0.1) probably_damaging(0.983) TCGA-66-2785-01 1 110050902 110050902 C A AMIGO1 Missense_Mutation p.W211C 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-66-2785-01 1 110201676 110201676 G C GSTM4 Missense_Mutation p.E171Q 0.16 tolerated(0.08) benign(0.027) TCGA-66-2785-01 1 110925519 110925519 C T SLC16A4 Missense_Mutation p.E53K 0.18 tolerated(0.16) benign(0.033) TCGA-66-2785-01 1 114483936 114483936 C T HIPK1 Silent p.L311L 0.14 TCGA-66-2785-01 1 116666819 116666819 G A MAB21L3 Missense_Mutation p.E108K 0.14 deleterious(0.03) probably_damaging(0.926) TCGA-66-2785-01 1 117297467 117297467 G C CD2 Silent p.L92L 0.10 TCGA-66-2785-01 1 117297543 117297543 T C CD2 Silent p.L118L 0.14 TCGA-66-2785-01 1 12343540 12343540 A G VPS13D Missense_Mutation p.K1794R 0.18 benign(0.003) TCGA-66-2785-01 1 142803570 142803570 T C RP11-423O2.5 RNA 0.04 TCGA-66-2785-01 1 145578463 145578463 C G PIAS3 Missense_Mutation p.I142M 0.06 tolerated(0.12) probably_damaging(1) TCGA-66-2785-01 1 149885485 149885485 C A SV2A 5'UTR 0.32 TCGA-66-2785-01 1 149885486 149885486 C A SV2A 5'UTR 0.30 TCGA-66-2785-01 1 150082657 150082657 G C VPS45 Missense_Mutation p.E514Q 0.09 deleterious(0) probably_damaging(1) TCGA-66-2785-01 1 150236221 150236221 C G CA14 Missense_Mutation p.I297M 0.13 deleterious(0.02) possibly_damaging(0.569) TCGA-66-2785-01 1 150526437 150526437 C T ADAMTSL4 Missense_Mutation p.H324Y 0.11 tolerated(0.62) benign(0.003) TCGA-66-2785-01 1 150724428 150724428 C T CTSS Silent p.L152L 0.10 TCGA-66-2785-01 1 151131683 151131683 G C TNFAIP8L2 Missense_Mutation p.K170N 0.09 deleterious(0.03) benign(0.196) TCGA-66-2785-01 1 151955451 151955451 C T S100A10 3'UTR 0.10 TCGA-66-2785-01 1 152277254 152277254 C G FLG Missense_Mutation p.E3370Q 0.10 unknown(0) TCGA-66-2785-01 1 153346292 153346292 C T S100A12 3'UTR 0.11 TCGA-66-2785-01 1 153617731 153617731 G T CHTOP Nonsense_Mutation p.E245* 0.15 TCGA-66-2785-01 1 153945266 153945266 T A CREB3L4 Missense_Mutation p.L197Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-66-2785-01 1 153949464 153949464 C G JTB Missense_Mutation p.E37Q 0.13 tolerated(0.06) benign(0.249) TCGA-66-2785-01 1 153954960 153954960 C G RAB13 Intron 0.11 TCGA-66-2785-01 1 155175103 155175103 C T THBS3 Silent p.L97L 0.28 TCGA-66-2785-01 1 155307287 155307287 C G ASH1L 3'UTR 0.24 TCGA-66-2785-01 1 155646348 155646348 C G YY1AP1 Missense_Mutation p.Q243H 0.13 deleterious(0.02) probably_damaging(1) TCGA-66-2785-01 1 155838163 155838163 T A SYT11 Missense_Mutation p.S148T 0.25 tolerated(0.26) benign(0.065) TCGA-66-2785-01 1 155921271 155921271 G A ARHGEF2 Intron 0.10 TCGA-66-2785-01 1 156280936 156280936 G C CCT3 Silent p.L402L 0.14 TCGA-66-2785-01 1 156509192 156509192 G C IQGAP3 Missense_Mutation p.F1010L 0.20 deleterious(0.05) possibly_damaging(0.478) TCGA-66-2785-01 1 156622787 156622787 C G BCAN Intron 0.10 TCGA-66-2785-01 1 156703852 156703852 G C RRNAD1 Missense_Mutation p.D230H 0.14 deleterious(0.02) possibly_damaging(0.759) TCGA-66-2785-01 1 156707139 156707139 C T MRPL24 3'UTR 0.04 TCGA-66-2785-01 1 157509064 157509064 C G FCRL5 Missense_Mutation p.R405T 0.11 deleterious(0.02) benign(0.394) TCGA-66-2785-01 1 158389820 158389820 A G OR10K2 Silent p.T279T 0.17 TCGA-66-2785-01 1 158581092 158581092 C T SPTA1 Missense_Mutation p.D2408N 0.09 deleterious(0.03) probably_damaging(1) TCGA-66-2785-01 1 158612261 158612261 G C SPTA1 Missense_Mutation p.I1559M 0.12 tolerated(0.08) benign(0.111) TCGA-66-2785-01 1 158641934 158641934 C T SPTA1 Missense_Mutation p.R468H 0.10 deleterious(0) probably_damaging(0.951) TCGA-66-2785-01 1 158687704 158687704 A T OR6K3 Missense_Mutation p.F68I 0.12 deleterious(0.01) probably_damaging(0.931) TCGA-66-2785-01 1 160104397 160104397 C G ATP1A2 Missense_Mutation p.Q651E 0.08 tolerated(0.53) benign(0.001) TCGA-66-2785-01 1 160765981 160765981 G A LY9 Missense_Mutation p.V2M 0.10 tolerated(0.07) benign(0.05) TCGA-66-2785-01 1 160784311 160784311 G C LY9 Missense_Mutation p.E278Q 0.09 tolerated(0.08) benign(0.189) TCGA-66-2785-01 1 160788107 160788107 G C LY9 Missense_Mutation p.R481P 0.11 tolerated(0.22) benign(0) TCGA-66-2785-01 1 161128308 161128308 G C UFC1 3'UTR 0.07 TCGA-66-2785-01 1 161518212 161518212 G - FCGR3A Frame_Shift_Del p.I142Mfs*21 0.17 TCGA-66-2785-01 1 161518423 161518423 C T FCGR3A Missense_Mutation p.R72K 0.05 tolerated(0.1) probably_damaging(0.942) TCGA-66-2785-01 1 161647458 161647458 A T FCGR2B 3'UTR 0.14 TCGA-66-2785-01 1 167097043 167097043 C T DUSP27 Missense_Mutation p.A892V 0.22 deleterious(0) benign(0.043) TCGA-66-2785-01 1 167962587 167962587 G A DCAF6 Missense_Mutation p.S271N 0.27 tolerated(0.08) probably_damaging(0.943) TCGA-66-2785-01 1 169580801 169580801 C G SELP Missense_Mutation p.R359T 0.10 tolerated(0.55) benign(0.363) TCGA-66-2785-01 1 1696810 1696810 C A NADK Missense_Mutation p.K12N 0.19 deleterious_low_confidence(0) possibly_damaging(0.788) TCGA-66-2785-01 1 169953797 169953797 C T KIFAP3 Missense_Mutation p.R440Q 0.10 tolerated(0.39) benign(0.031) TCGA-66-2785-01 1 170024510 170024510 C T KIFAP3 Missense_Mutation p.E34K 0.11 deleterious(0.01) probably_damaging(0.92) TCGA-66-2785-01 1 171486904 171486904 G C PRRC2C Missense_Mutation p.G232A 0.16 unknown(0) TCGA-66-2785-01 1 172417620 172417620 G A C1orf105 Silent p.K49K 0.27 TCGA-66-2785-01 1 17250858 17250858 C T CROCC Silent p.L79L 0.17 TCGA-66-2785-01 1 17279892 17279892 G C CROCC Missense_Mutation p.E1034D 0.12 possibly_damaging(0.8) TCGA-66-2785-01 1 173020013 173020013 A G TNFSF18 Silent p.N30N 0.14 TCGA-66-2785-01 1 173735424 173735424 G C KLHL20 Missense_Mutation p.E431Q 0.10 deleterious(0) probably_damaging(0.991) TCGA-66-2785-01 1 175375563 175375563 C A TNR Missense_Mutation p.E96D 0.09 tolerated(0.68) benign(0.001) TCGA-66-2785-01 1 17552530 17552530 C A PADI1 Missense_Mutation p.L177M 0.16 deleterious(0.02) probably_damaging(1) TCGA-66-2785-01 1 17588662 17588662 T C PADI3 Missense_Mutation p.L103P 0.22 tolerated(0.33) possibly_damaging(0.486) TCGA-66-2785-01 1 176915139 176915139 G C ASTN1 Silent p.L724L 0.09 TCGA-66-2785-01 1 179033588 179033588 G A FAM20B Missense_Mutation p.D299N 0.13 tolerated(0.38) benign(0.194) TCGA-66-2785-01 1 179503872 179503872 G C AXDND1 Missense_Mutation p.E936Q 0.10 deleterious(0) possibly_damaging(0.727) TCGA-66-2785-01 1 179815465 179815465 T A TOR1AIP2 Missense_Mutation p.E385V 0.26 deleterious(0) probably_damaging(1) TCGA-66-2785-01 1 18152600 18152600 G C ACTL8 Missense_Mutation p.Q229H 0.22 tolerated(0.05) benign(0.382) TCGA-66-2785-01 1 184853879 184853879 T C FAM129A Silent p.P163P 0.15 TCGA-66-2785-01 1 185267261 185267261 C A IVNS1ABP Missense_Mutation p.G612V 0.09 deleterious(0) probably_damaging(1) TCGA-66-2785-01 1 185270568 185270568 G C IVNS1ABP Nonsense_Mutation p.S298* 0.09 TCGA-66-2785-01 1 186099718 186099718 G C HMCN1 Silent p.V4373V 0.12 TCGA-66-2785-01 1 192627366 192627366 G A RGS13 Missense_Mutation p.E55K 0.16 deleterious(0) probably_damaging(0.997) TCGA-66-2785-01 1 198700751 198700751 G A PTPRC Missense_Mutation p.E624K 0.07 deleterious(0) possibly_damaging(0.834) TCGA-66-2785-01 1 198725408 198725408 A G PTPRC 3'UTR 0.37 TCGA-66-2785-01 1 200801403 200801403 G C CAMSAP2 Missense_Mutation p.G241R 0.07 tolerated(0.06) possibly_damaging(0.908) TCGA-66-2785-01 1 200801404 200801404 G T CAMSAP2 Missense_Mutation p.G241V 0.07 tolerated(0.23) possibly_damaging(0.835) TCGA-66-2785-01 1 200825142 200825142 G C CAMSAP2 Missense_Mutation p.E1301Q 0.11 deleterious(0.03) probably_damaging(0.923) TCGA-66-2785-01 1 201047027 201047027 C G CACNA1S Silent p.L533L 0.10 TCGA-66-2785-01 1 201060808 201060808 G A CACNA1S Silent p.F218F 0.08 TCGA-66-2785-01 1 203819065 203819065 C T ZC3H11A Missense_Mutation p.S617F 0.13 tolerated(0.66) benign(0.029) TCGA-66-2785-01 1 204131207 204131207 G A REN Silent p.S61S 0.22 TCGA-66-2785-01 1 204167513 204167513 G A GOLT1A 3'UTR 0.07 TCGA-66-2785-01 1 204379147 204379147 C G PPP1R15B Missense_Mutation p.D465H 0.39 deleterious(0) possibly_damaging(0.83) TCGA-66-2785-01 1 204587926 204587926 C T LRRN2 Missense_Mutation p.E399K 0.13 tolerated(0.12) benign(0.309) TCGA-66-2785-01 1 204953167 204953167 C T NFASC Intron 0.08 TCGA-66-2785-01 1 205744181 205744181 G C RAB7L1 5'UTR 0.21 TCGA-66-2785-01 1 206331252 206331252 T A CTSE 3'UTR 0.22 TCGA-66-2785-01 1 207085125 207085125 G C FAIM3 Silent p.L220L 0.08 TCGA-66-2785-01 1 207244530 207244530 C G PFKFB2 Intron 0.12 TCGA-66-2785-01 1 210273457 210273457 C G SYT14 Nonsense_Mutation p.S317* 0.09 TCGA-66-2785-01 1 210761406 210761406 G C HHAT Missense_Mutation p.R404P 0.20 deleterious(0.03) possibly_damaging(0.822) TCGA-66-2785-01 1 212502659 212502659 G C PPP2R5A Missense_Mutation p.D122H 0.08 deleterious(0) possibly_damaging(0.811) TCGA-66-2785-01 1 214818501 214818501 C T CENPF Missense_Mutation p.S1863F 0.05 benign(0.246) TCGA-66-2785-01 1 215824088 215824088 G T USH2A Missense_Mutation p.T4730N 0.34 probably_damaging(0.986) TCGA-66-2785-01 1 215916526 215916526 A G USH2A Silent p.C3847C 0.19 TCGA-66-2785-01 1 216017714 216017714 C A USH2A Missense_Mutation p.K3060N 0.22 benign(0.017) TCGA-66-2785-01 1 216251512 216251512 G T USH2A Missense_Mutation p.L1831M 0.11 probably_damaging(0.988) TCGA-66-2785-01 1 216500961 216500961 G T USH2A Silent p.R274R 0.39 TCGA-66-2785-01 1 220835153 220835153 G A MARK1 Splice_Site p.X678_splice 0.19 TCGA-66-2785-01 1 220955136 220955136 C G MARC2 Missense_Mutation p.P301A 0.03 deleterious(0.01) probably_damaging(0.994) TCGA-66-2785-01 1 221053614 221053614 C T HLX Missense_Mutation p.P139S 0.09 tolerated_low_confidence(0.07) benign(0.025) TCGA-66-2785-01 1 22214545 22214545 T C HSPG2 Missense_Mutation p.R197G 0.14 probably_damaging(0.909) TCGA-66-2785-01 1 222732062 222732062 C G TAF1A Missense_Mutation p.K431N 0.12 deleterious(0.01) possibly_damaging(0.885) TCGA-66-2785-01 1 222876525 222876525 G C AIDA Missense_Mutation p.Q49E 0.08 tolerated(0.6) benign(0.036) TCGA-66-2785-01 1 22413036 22413036 G C CDC42 Missense_Mutation p.E95Q 0.20 tolerated(0.22) benign(0.083) TCGA-66-2785-01 1 228109220 228109220 C G WNT9A Nonstop_Mutation p.*366Sext*136 0.09 TCGA-66-2785-01 1 228285672 228285672 A G ARF1 Silent p.E168E 0.14 TCGA-66-2785-01 1 228495998 228495998 G T OBSCN Missense_Mutation p.R5175L 0.20 benign(0.021) TCGA-66-2785-01 1 228594287 228594287 G A TRIM11 5'UTR 0.28 TCGA-66-2785-01 1 228645302 228645302 C T HIST3H2A Missense_Mutation p.D73N 0.17 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-66-2785-01 1 228879380 228879380 C G RHOU Missense_Mutation p.Q224E 0.07 tolerated(0.39) benign(0.1) TCGA-66-2785-01 1 229783477 229783477 C G URB2 Nonsense_Mutation p.S1376* 0.03 TCGA-66-2785-01 1 229795041 229795041 C G URB2 Silent p.A1524A 0.38 TCGA-66-2785-01 1 234458779 234458779 C A SLC35F3 Silent p.I421I 0.18 TCGA-66-2785-01 1 235827887 235827887 C G LYST Silent p.V3691V 0.06 TCGA-66-2785-01 1 235929511 235929511 C A LYST Missense_Mutation p.A1997S 0.11 tolerated(0.56) possibly_damaging(0.787) TCGA-66-2785-01 1 235955020 235955020 C A LYST Missense_Mutation p.D1508Y 0.09 deleterious(0.01) probably_damaging(0.957) TCGA-66-2785-01 1 237550644 237550644 G T RYR2 Missense_Mutation p.V214L 0.18 benign(0.048) TCGA-66-2785-01 1 237580371 237580371 G C RYR2 Missense_Mutation p.A266P 0.10 benign(0.143) TCGA-66-2785-01 1 237794799 237794799 G A RYR2 Silent p.V2171V 0.20 TCGA-66-2785-01 1 237868518 237868518 G T RYR2 Missense_Mutation p.R3152L 0.19 benign(0.146) TCGA-66-2785-01 1 237949313 237949313 C T RYR2 Silent p.T4435T 0.14 TCGA-66-2785-01 1 240374396 240374396 C T FMN2 Missense_Mutation p.S1309F 0.09 probably_damaging(0.95) TCGA-66-2785-01 1 2415982 2415982 C A PLCH2 Silent p.L220L 0.16 TCGA-66-2785-01 1 2421253 2421253 G A PLCH2 Missense_Mutation p.D461N 0.20 deleterious(0) probably_damaging(0.997) TCGA-66-2785-01 1 243289777 243289777 C T CEP170 Missense_Mutation p.E1577K 0.08 tolerated_low_confidence(0.06) probably_damaging(0.995) TCGA-66-2785-01 1 247150665 247150665 T C ZNF695 Silent p.E384E 0.14 TCGA-66-2785-01 1 247150970 247150970 G C ZNF695 Missense_Mutation p.L283V 0.13 deleterious(0.01) benign(0.156) TCGA-66-2785-01 1 247581973 247581973 C A NLRP3 5'UTR 0.33 TCGA-66-2785-01 1 247768946 247768946 A T OR2G3 Missense_Mutation p.H20L 0.12 tolerated(0.06) benign(0.001) TCGA-66-2785-01 1 247875804 247875804 A G OR6F1 Missense_Mutation p.L85P 0.11 deleterious(0.01) possibly_damaging(0.713) TCGA-66-2785-01 1 24795600 24795600 C A NIPAL3 Silent p.V382V 0.20 TCGA-66-2785-01 1 248004613 248004613 C T OR11L1 Missense_Mutation p.E196K 0.09 tolerated(0.07) possibly_damaging(0.577) TCGA-66-2785-01 1 248262678 248262678 A G OR2L13 Translation_Start_Site p.M1? 0.23 deleterious(0) probably_damaging(0.986) TCGA-66-2785-01 1 248525698 248525698 C A OR2T4 Silent p.T272T 0.25 TCGA-66-2785-01 1 248756958 248756958 C A OR2T10 Missense_Mutation p.A38S 0.12 tolerated(0.19) possibly_damaging(0.468) TCGA-66-2785-01 1 26085168 26085168 G A MAN1C1 Missense_Mutation p.E339K 0.11 tolerated(0.51) benign(0.071) TCGA-66-2785-01 1 27682180 27682180 G T MAP3K6 Missense_Mutation p.D1256E 0.10 deleterious(0.03) probably_damaging(0.996) TCGA-66-2785-01 1 29638003 29638003 A G PTPRU Missense_Mutation p.M975V 0.24 deleterious(0.02) benign(0.424) TCGA-66-2785-01 1 32192998 32192998 C A BAI2 3'UTR 0.11 TCGA-66-2785-01 1 35250801 35250801 C G GJB3 Silent p.L146L 0.22 TCGA-66-2785-01 1 36026776 36026776 G C NCDN Missense_Mutation p.E342Q 0.31 deleterious(0) possibly_damaging(0.88) TCGA-66-2785-01 1 36935300 36935300 G A CSF3R Missense_Mutation p.T476I 0.13 deleterious(0.03) benign(0.196) TCGA-66-2785-01 1 39903536 39903536 G C MACF1 Missense_Mutation p.D3967H 0.10 probably_damaging(0.93) TCGA-66-2785-01 1 39914334 39914334 G A MACF1 Silent p.L4660L 0.07 TCGA-66-2785-01 1 40777372 40777372 C T COL9A2 Missense_Mutation p.D145N 0.09 tolerated(0.43) unknown(0) TCGA-66-2785-01 1 44422280 44422280 C A IPO13 Silent p.V337V 0.11 TCGA-66-2785-01 1 44443545 44443545 C G ATP6V0B Intron 0.12 TCGA-66-2785-01 1 45792710 45792710 G A HPDL 5'UTR 0.28 TCGA-66-2785-01 1 46073007 46073007 G C NASP Missense_Mutation p.E142Q 0.09 deleterious(0.02) probably_damaging(0.997) TCGA-66-2785-01 1 46489559 46489559 A T MAST2 Missense_Mutation p.I563L 0.25 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-66-2785-01 1 51822469 51822469 C T EPS15 Missense_Mutation p.R865K 0.12 tolerated(0.36) benign(0.044) TCGA-66-2785-01 1 53554633 53554633 C A SLC1A7 Missense_Mutation p.M460I 0.07 tolerated(0.05) probably_damaging(0.999) TCGA-66-2785-01 1 55194063 55194063 G C TTC4 Missense_Mutation p.K213N 0.21 deleterious(0.01) benign(0.086) TCGA-66-2785-01 1 57284973 57284973 C G C1orf168 5'UTR 0.10 TCGA-66-2785-01 1 57480785 57480785 C G DAB1 Missense_Mutation p.K405N 0.12 tolerated(0.1) benign(0.002) TCGA-66-2785-01 1 62739549 62739549 C G KANK4 Missense_Mutation p.Q409H 0.13 tolerated(0.57) benign(0.02) TCGA-66-2785-01 1 62960018 62960018 T G DOCK7 Silent p.A1684A 0.40 TCGA-66-2785-01 1 65130343 65130343 G C CACHD1 Missense_Mutation p.D702H 0.11 deleterious(0) probably_damaging(0.999) TCGA-66-2785-01 1 67109381 67109381 C A SGIP1 Silent p.I146I 0.10 TCGA-66-2785-01 1 67279719 67279719 G C WDR78 3'UTR 0.12 TCGA-66-2785-01 1 70482164 70482164 T C LRRC7 Missense_Mutation p.F385L 0.12 deleterious(0.04) benign(0.238) TCGA-66-2785-01 1 74834918 74834918 G T FPGT-TNNI3K Missense_Mutation p.R595L 0.05 tolerated(0.67) benign(0.272) TCGA-66-2785-01 1 75005943 75005943 C A TNNI3K Missense_Mutation p.L894M 0.54 deleterious_low_confidence(0.01) possibly_damaging(0.468) TCGA-66-2785-01 1 75036851 75036851 G T C1orf173 Missense_Mutation p.Q1515K 0.54 deleterious(0.02) benign(0.121) TCGA-66-2785-01 1 75097467 75097467 G T C1orf173 Missense_Mutation p.S250Y 0.10 tolerated(1) possibly_damaging(0.521) TCGA-66-2785-01 1 75185054 75185054 T A CRYZ Missense_Mutation p.K89N 0.11 tolerated(0.34) possibly_damaging(0.635) TCGA-66-2785-01 1 75602794 75602794 G A LHX8 Missense_Mutation p.E39K 0.08 tolerated(0.39) benign(0.011) TCGA-66-2785-01 1 77510165 77510165 G C ST6GALNAC5 Missense_Mutation p.D180H 0.13 probably_damaging(1) TCGA-66-2785-01 1 7812544 7812544 G C CAMTA1 Missense_Mutation p.D1637H 0.13 tolerated(0.1) probably_damaging(0.991) TCGA-66-2785-01 1 84700929 84700929 G A PRKACB Missense_Mutation p.E380K 0.10 deleterious(0) possibly_damaging(0.776) TCGA-66-2785-01 1 84874056 84874056 G C DNASE2B Intron 0.15 TCGA-66-2785-01 1 85624809 85624809 G C SYDE2 Nonsense_Mutation p.S1070* 0.03 TCGA-66-2785-01 1 86374306 86374306 C T COL24A1 Missense_Mutation p.G900E 0.08 deleterious(0) probably_damaging(1) TCGA-66-2785-01 1 86907182 86907182 A T CLCA2 Nonsense_Mutation p.R482* 0.07 TCGA-66-2785-01 1 89448247 89448247 T C RBMXL1 3'UTR 0.27 TCGA-66-2785-01 1 89652147 89652147 C A GBP4 Nonsense_Mutation p.E526* 0.16 TCGA-66-2785-01 1 89729533 89729533 T C GBP5 Silent p.L416L 0.16 TCGA-66-2785-01 1 89886681 89886681 C G GBP1P1 RNA 0.12 TCGA-66-2785-01 1 99772717 99772717 A G LPPR4 3'UTR 0.15 TCGA-66-2785-01 20 13029865 13029865 A G SPTLC3 Intron 0.30 TCGA-66-2785-01 20 16362393 16362393 C G KIF16B Splice_Site p.X595_splice 0.11 TCGA-66-2785-01 20 1903162 1903162 G C SIRPA Missense_Mutation p.V320L 0.11 tolerated(0.62) benign(0.171) TCGA-66-2785-01 20 23966001 23966001 T A GGTLC1 Splice_Site p.X178_splice 0.14 TCGA-66-2785-01 20 25011462 25011462 G A ACSS1 Silent p.I188I 0.31 TCGA-66-2785-01 20 31695567 31695567 G A BPIFB4 Missense_Mutation p.V588I 0.45 tolerated(0.66) benign(0.016) TCGA-66-2785-01 20 32266052 32266052 C A E2F1 Missense_Mutation p.C227F 0.38 deleterious(0) probably_damaging(0.952) TCGA-66-2785-01 20 33345597 33345597 C G NCOA6 Missense_Mutation p.W318C 0.10 probably_damaging(0.998) TCGA-66-2785-01 20 33839711 33839711 G C MMP24 Missense_Mutation p.W133C 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-66-2785-01 20 34240637 34240637 C G RBM12 Missense_Mutation p.D870H 0.14 deleterious(0) unknown(0) TCGA-66-2785-01 20 34302155 34302155 C G RBM39 Missense_Mutation p.D350H 0.10 deleterious(0) possibly_damaging(0.885) TCGA-66-2785-01 20 35661184 35661184 G T RBL1 Missense_Mutation p.H756N 0.13 deleterious(0.04) benign(0.021) TCGA-66-2785-01 20 40944533 40944533 T A PTPRT Missense_Mutation p.S657C 0.16 tolerated(0.05) benign(0.161) TCGA-66-2785-01 20 43566779 43566779 G C PABPC1L Missense_Mutation p.D575H 0.31 deleterious(0) probably_damaging(1) TCGA-66-2785-01 20 44517426 44517426 C A NEURL2 Nonsense_Mutation p.E277* 0.08 TCGA-66-2785-01 20 44640944 44640944 C T MMP9 Missense_Mutation p.P389L 0.07 deleterious(0) possibly_damaging(0.752) TCGA-66-2785-01 20 45131354 45131354 C A ZNF334 Silent p.P208P 0.11 TCGA-66-2785-01 20 46365469 46365469 G C SULF2 Silent p.L131L 0.08 TCGA-66-2785-01 20 50048903 50048903 G A NFATC2 Missense_Mutation p.S808L 0.26 deleterious(0.04) possibly_damaging(0.449) TCGA-66-2785-01 20 52774666 52774666 C T CYP24A1 Missense_Mutation p.D399N 0.11 deleterious(0.03) possibly_damaging(0.724) TCGA-66-2785-01 20 57829870 57829870 C T ZNF831 3'UTR 0.16 TCGA-66-2785-01 20 60509210 60509210 G A CDH4 Missense_Mutation p.A826T 0.22 tolerated(0.15) possibly_damaging(0.903) TCGA-66-2785-01 20 60886511 60886511 C A LAMA5 Silent p.L3296L 0.29 TCGA-66-2785-01 20 60893996 60893996 T A LAMA5 Silent p.T2315T 0.57 TCGA-66-2785-01 20 61143691 61143691 G A C20orf166 5'Flank 0.42 TCGA-66-2785-01 20 61512756 61512756 C T DIDO1 Missense_Mutation p.D1518N 0.10 probably_damaging(0.992) TCGA-66-2785-01 20 62331908 62331908 G T ARFRP1 Intron 0.33 TCGA-66-2785-01 20 7886891 7886891 T C HAO1 Missense_Mutation p.K211E 0.16 tolerated(0.85) benign(0.001) TCGA-66-2785-01 21 10862811 10862811 C T IGHV1OR21-1 Missense_Mutation p.S36L 0.04 deleterious(0.03) possibly_damaging(0.6) TCGA-66-2785-01 21 11039377 11039377 C G BAGE2 RNA 0.05 TCGA-66-2785-01 21 19647652 19647652 A C TMPRSS15 Silent p.G922G 0.14 TCGA-66-2785-01 21 28306991 28306991 G T ADAMTS5 Missense_Mutation p.Q495K 0.15 tolerated(0.1) benign(0.029) TCGA-66-2785-01 21 33346872 33346872 C T HUNK Missense_Mutation p.S339F 0.14 tolerated(0.32) benign(0.323) TCGA-66-2785-01 21 34721847 34721847 G C IFNAR1 Missense_Mutation p.E381Q 0.18 tolerated(0.06) possibly_damaging(0.612) TCGA-66-2785-01 21 41173288 41173288 A T IGSF5 3'UTR 0.22 TCGA-66-2785-01 21 43541194 43541194 C A UMODL1 Intron 0.18 TCGA-66-2785-01 21 45971181 45971181 G A KRTAP10-2 Missense_Mutation p.S54F 0.21 deleterious(0.01) possibly_damaging(0.828) TCGA-66-2785-01 21 46021108 46021108 G C KRTAP10-7 Missense_Mutation p.C196S 0.07 deleterious(0.05) unknown(0) TCGA-66-2785-01 21 46191303 46191303 G C UBE2G2 Missense_Mutation p.L163V 0.22 tolerated(0.08) benign(0.162) TCGA-66-2785-01 22 18022049 18022049 G A CECR2 Silent p.G718G 0.28 TCGA-66-2785-01 22 22065149 22065149 G C YPEL1 5'UTR 0.14 TCGA-66-2785-01 22 22842929 22842929 C G ZNF280B Missense_Mutation p.L265F 0.24 tolerated(0.35) possibly_damaging(0.541) TCGA-66-2785-01 22 24086611 24086611 G A ZNF70 Silent p.L239L 0.05 TCGA-66-2785-01 22 24432570 24432570 A G CABIN1 Missense_Mutation p.I13V 0.24 tolerated(1) benign(0.001) TCGA-66-2785-01 22 24718054 24718054 C G SPECC1L Nonsense_Mutation p.S369* 0.12 TCGA-66-2785-01 22 25115858 25115858 C T PIWIL3 Missense_Mutation p.D797N 0.14 deleterious(0) probably_damaging(0.996) TCGA-66-2785-01 22 29656762 29656762 G C RHBDD3 Missense_Mutation p.C208W 0.27 tolerated(0.08) benign(0.004) TCGA-66-2785-01 22 29754886 29754886 G A AP1B1 Silent p.I118I 0.11 TCGA-66-2785-01 22 30416605 30416605 C G MTMR3 Nonsense_Mutation p.S986* 0.14 TCGA-66-2785-01 22 31091221 31091221 G C OSBP2 Missense_Mutation p.E109Q 0.18 deleterious_low_confidence(0.03) benign(0.329) TCGA-66-2785-01 22 31600551 31600551 G T RNF185 Missense_Mutation p.M186I 0.28 tolerated(1) benign(0.001) TCGA-66-2785-01 22 31829895 31829895 C G DRG1 Missense_Mutation p.Q348E 0.17 deleterious(0) probably_damaging(0.999) TCGA-66-2785-01 22 32289687 32289687 G C DEPDC5 Missense_Mutation p.E1376Q 0.06 deleterious(0) probably_damaging(0.998) TCGA-66-2785-01 22 32810246 32810246 G A BPIFC 3'UTR 0.06 TCGA-66-2785-01 22 32813092 32813092 C G BPIFC Missense_Mutation p.G435A 0.04 tolerated(0.72) possibly_damaging(0.773) TCGA-66-2785-01 22 32929781 32929781 C G SYN3 Missense_Mutation p.E365Q 0.12 deleterious(0) unknown(0) TCGA-66-2785-01 22 38245672 38245672 C G EIF3L Intron 0.19 TCGA-66-2785-01 22 38823708 38823708 C G KCNJ4 Missense_Mutation p.E144Q 0.10 deleterious(0) probably_damaging(0.94) TCGA-66-2785-01 22 39440184 39440184 C T APOBEC3F Intron 0.11 TCGA-66-2785-01 22 42423026 42423026 C T WBP2NL Silent p.L257L 0.14 TCGA-66-2785-01 22 42956238 42956238 C G SERHL2 Missense_Mutation p.L194V 0.08 deleterious(0) probably_damaging(0.935) TCGA-66-2785-01 22 45133203 45133203 G A PRR5 3'UTR 0.12 TCGA-66-2785-01 22 45598926 45598926 G T KIAA0930 Missense_Mutation p.T271K 0.25 deleterious(0.02) benign(0.277) TCGA-66-2785-01 22 45601129 45601129 T A KIAA0930 Missense_Mutation p.N167I 0.18 deleterious(0) probably_damaging(0.984) TCGA-66-2785-01 22 50279761 50279761 G A ZBED4 Silent p.L817L 0.17 TCGA-66-2785-01 22 50845188 50845188 G A PPP6R2 Missense_Mutation p.E100K 0.14 deleterious(0.01) possibly_damaging(0.622) TCGA-66-2785-01 2 100167900 100167900 G C AFF3 3'UTR 0.07 TCGA-66-2785-01 2 100168001 100168001 C G AFF3 Missense_Mutation p.E1231Q 0.06 tolerated(0.1) benign(0.235) TCGA-66-2785-01 2 108488633 108488633 G T RGPD4 Missense_Mutation p.K1391N 0.11 tolerated(0.23) probably_damaging(0.992) TCGA-66-2785-01 2 108488914 108488914 G C RGPD4 Missense_Mutation p.R1485T 0.04 tolerated(0.24) possibly_damaging(0.884) TCGA-66-2785-01 2 112615953 112615953 C G ANAPC1 Missense_Mutation p.V430L 0.05 deleterious(0.01) possibly_damaging(0.764) TCGA-66-2785-01 2 113999695 113999695 G T PAX8 Missense_Mutation p.A164D 0.12 deleterious(0) possibly_damaging(0.796) TCGA-66-2785-01 2 114340561 114340561 A T MIR1302-3 RNA 0.06 TCGA-66-2785-01 2 116520161 116520161 C A DPP10 Missense_Mutation p.T367K 0.09 tolerated(0.39) benign(0.022) TCGA-66-2785-01 2 125175063 125175063 A C CNTNAP5 Missense_Mutation p.K142T 0.20 deleterious(0.01) probably_damaging(0.925) TCGA-66-2785-01 2 12864907 12864907 A T TRIB2 Intron 0.17 TCGA-66-2785-01 2 130725920 130725920 G T RAB6C-AS1 RNA 0.46 TCGA-66-2785-01 2 130832887 130832887 C A POTEF Missense_Mutation p.G720C 0.35 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-66-2785-01 2 139316676 139316676 G A SPOPL Missense_Mutation p.D189N 0.28 deleterious(0.03) benign(0.049) TCGA-66-2785-01 2 141055416 141055416 G A LRP1B Missense_Mutation p.H4310Y 0.37 benign(0.152) TCGA-66-2785-01 2 141665461 141665461 C T LRP1B Missense_Mutation p.E1169K 0.11 possibly_damaging(0.678) TCGA-66-2785-01 2 148653896 148653896 C T ACVR2A Nonsense_Mutation p.Q28* 0.12 TCGA-66-2785-01 2 152496966 152496966 C G NEB Missense_Mutation p.S2863T 0.14 probably_damaging(0.947) TCGA-66-2785-01 2 153537844 153537844 T C PRPF40A Missense_Mutation p.M118V 0.14 tolerated(0.32) benign(0.072) TCGA-66-2785-01 2 15417012 15417012 G A NBAS Silent p.H1784H 0.12 TCGA-66-2785-01 2 155102386 155102386 G T GALNT13 Missense_Mutation p.G250W 0.10 deleterious(0) probably_damaging(0.999) TCGA-66-2785-01 2 155102387 155102387 G T GALNT13 Missense_Mutation p.G250V 0.09 deleterious(0.04) possibly_damaging(0.699) TCGA-66-2785-01 2 155566136 155566136 G A KCNJ3 Missense_Mutation p.E242K 0.06 deleterious(0) probably_damaging(0.968) TCGA-66-2785-01 2 158162286 158162286 G A GALNT5 Missense_Mutation p.C822Y 0.08 deleterious(0) probably_damaging(1) TCGA-66-2785-01 2 159477908 159477908 G C PKP4 Missense_Mutation p.R193T 0.07 deleterious(0) possibly_damaging(0.821) TCGA-66-2785-01 2 159499115 159499115 G A PKP4 Missense_Mutation p.E605K 0.09 tolerated(0.05) possibly_damaging(0.689) TCGA-66-2785-01 2 159536975 159536975 A G PKP4 Missense_Mutation p.N1122S 0.14 tolerated(1) benign(0) TCGA-66-2785-01 2 160043410 160043411 - A TANC1 Intron 0.13 TCGA-66-2785-01 2 160205325 160205325 C T BAZ2B Nonsense_Mutation p.W1719* 0.05 TCGA-66-2785-01 2 160836387 160836387 C G PLA2R1 Missense_Mutation p.R741T 0.16 deleterious(0) probably_damaging(0.996) TCGA-66-2785-01 2 162088005 162088005 T A TANK Silent p.S348S 0.07 TCGA-66-2785-01 2 162088022 162088022 C G TANK Nonsense_Mutation p.S354* 0.07 TCGA-66-2785-01 2 162175349 162175349 C G PSMD14 Missense_Mutation p.L5V 0.10 tolerated_low_confidence(0.33) benign(0.01) TCGA-66-2785-01 2 163302603 163302603 G A KCNH7 Silent p.F493F 0.13 TCGA-66-2785-01 2 166605267 166605267 T G GALNT3 3'UTR 0.55 TCGA-66-2785-01 2 166771904 166771904 C T TTC21B Missense_Mutation p.G649R 0.11 deleterious(0.01) possibly_damaging(0.686) TCGA-66-2785-01 2 167279877 167279877 C T SCN7A Missense_Mutation p.M973I 0.38 tolerated(0.08) probably_damaging(0.955) TCGA-66-2785-01 2 168099484 168099484 C G XIRP2 Missense_Mutation p.Q528E 0.10 benign(0.373) TCGA-66-2785-01 2 168106531 168106531 G A XIRP2 Missense_Mutation p.A2877T 0.13 benign(0.008) TCGA-66-2785-01 2 170090056 170090056 C G LRP2 Missense_Mutation p.V1655L 0.10 benign(0.191) TCGA-66-2785-01 2 171264306 171264306 G C MYO3B Missense_Mutation p.E868Q 0.15 tolerated(0.21) benign(0.021) TCGA-66-2785-01 2 173352699 173352699 C G ITGA6 Missense_Mutation p.Q779E 0.08 deleterious(0) possibly_damaging(0.852) TCGA-66-2785-01 2 176812411 176812411 T A KIAA1715 Missense_Mutation p.Q168L 0.16 deleterious(0) probably_damaging(0.98) TCGA-66-2785-01 2 17898106 17898106 T A SMC6 Missense_Mutation p.R416S 0.17 deleterious(0.04) benign(0.063) TCGA-66-2785-01 2 179319148 179319148 G C DFNB59 Missense_Mutation p.G101R 0.04 deleterious(0.01) probably_damaging(1) TCGA-66-2785-01 2 179407873 179407873 C G TTN Missense_Mutation p.R32276T 0.13 TCGA-66-2785-01 2 179408933 179408933 C G TTN Missense_Mutation p.R32008T 0.20 TCGA-66-2785-01 2 179412489 179412489 C T TTN Silent p.L31288L 0.42 TCGA-66-2785-01 2 179426190 179426190 C G TTN Silent p.L28223L 0.13 TCGA-66-2785-01 2 179447699 179447699 G C TTN Missense_Mutation p.S21944C 0.11 TCGA-66-2785-01 2 179471884 179471884 T C TTN Missense_Mutation p.I17815M 0.14 TCGA-66-2785-01 2 179516856 179516856 T C TTN Missense_Mutation p.I13088V 0.11 TCGA-66-2785-01 2 179638667 179638667 G C TTN Missense_Mutation p.H2410D 0.08 TCGA-66-2785-01 2 179640827 179640827 C T TTN Missense_Mutation p.E1922K 0.12 TCGA-66-2785-01 2 179642692 179642692 G A TTN Missense_Mutation p.P1407S 0.10 TCGA-66-2785-01 2 179659746 179659746 T A TTN Missense_Mutation p.Q383L 0.12 TCGA-66-2785-01 2 179718259 179718259 G T CCDC141 Silent p.L1051L 0.14 TCGA-66-2785-01 2 182403949 182403949 T C CERKL Missense_Mutation p.K496E 0.14 deleterious(0) possibly_damaging(0.493) TCGA-66-2785-01 2 182763809 182763809 G T SSFA2 Missense_Mutation p.G158V 0.29 deleterious(0) probably_damaging(1) TCGA-66-2785-01 2 186671909 186671909 A G FSIP2 Missense_Mutation p.Q6048R 0.11 benign(0.256) TCGA-66-2785-01 2 187627189 187627189 C G FAM171B Missense_Mutation p.S707C 0.12 deleterious(0) probably_damaging(1) TCGA-66-2785-01 2 18770719 18770719 G A NT5C1B Missense_Mutation p.L6F 0.09 deleterious_low_confidence(0) possibly_damaging(0.839) TCGA-66-2785-01 2 189968994 189968994 C T COL5A2 Missense_Mutation p.R111K 0.05 benign(0.008) TCGA-66-2785-01 2 190531684 190531684 G A ASNSD1 Missense_Mutation p.D276N 0.05 tolerated(0.18) benign(0.003) TCGA-66-2785-01 2 191233948 191233948 C T INPP1 Missense_Mutation p.P196S 0.15 deleterious(0) probably_damaging(1) TCGA-66-2785-01 2 192700675 192700675 C A SDPR Missense_Mutation p.V418L 0.42 deleterious_low_confidence(0.01) benign(0.321) TCGA-66-2785-01 2 198646462 198646462 C G BOLL Missense_Mutation p.G50A 0.12 deleterious(0) probably_damaging(0.999) TCGA-66-2785-01 2 200193475 200193475 A G SATB2 Silent p.N444N 0.14 TCGA-66-2785-01 2 202545689 202545689 T C MPP4 Silent p.G267G 0.11 TCGA-66-2785-01 2 207814364 207814364 A T CPO Missense_Mutation p.E31V 0.20 tolerated(0.07) benign(0.075) TCGA-66-2785-01 2 209201606 209201606 C G PIKFYVE Nonsense_Mutation p.S1522* 0.15 TCGA-66-2785-01 2 211502431 211502431 C G CPS1 Missense_Mutation p.S904C 0.18 deleterious(0.02) possibly_damaging(0.792) TCGA-66-2785-01 2 212566791 212566791 T C ERBB4 Missense_Mutation p.S464G 0.19 tolerated(0.24) benign(0.005) TCGA-66-2785-01 2 216285490 216285490 C G FN1 Silent p.V527V 0.13 TCGA-66-2785-01 2 216289013 216289013 C G FN1 Missense_Mutation p.E358Q 0.16 tolerated(0.75) benign(0.286) TCGA-66-2785-01 2 217123847 217123847 G C MARCH4 3'UTR 0.17 TCGA-66-2785-01 2 220111441 220111441 G A STK16 Missense_Mutation p.R50Q 0.15 deleterious(0.03) probably_damaging(0.986) TCGA-66-2785-01 2 225339017 225339017 C G CUL3 Missense_Mutation p.R751T 0.06 deleterious(0) probably_damaging(0.994) TCGA-66-2785-01 2 226446958 226446958 C T NYAP2 Silent p.I275I 0.28 TCGA-66-2785-01 2 228882974 228882974 T A SPHKAP Missense_Mutation p.S866C 0.16 deleterious(0.05) benign(0.345) TCGA-66-2785-01 2 232322396 232322396 G C NCL Missense_Mutation p.Q469E 0.09 benign(0.153) TCGA-66-2785-01 2 233393325 233393325 C G CHRND Silent p.T156T 0.28 TCGA-66-2785-01 2 239990202 239990202 T C HDAC4 Missense_Mutation p.Y946C 0.11 deleterious(0) possibly_damaging(0.892) TCGA-66-2785-01 2 241976764 241976764 G C SNED1 Missense_Mutation p.E347Q 0.24 tolerated(0.12) probably_damaging(0.911) TCGA-66-2785-01 2 242814881 242814881 G T CXXC11 Nonsense_Mutation p.G392* 0.14 TCGA-66-2785-01 2 24518648 24518648 C - ITSN2 Frame_Shift_Del p.G507Afs*55 0.23 TCGA-66-2785-01 2 25016063 25016063 G A PTRHD1 Missense_Mutation p.H62Y 0.17 tolerated(0.64) benign(0.003) TCGA-66-2785-01 2 27320448 27320448 G C KHK Missense_Mutation p.K165N 0.06 tolerated(0.17) benign(0.002) TCGA-66-2785-01 2 27659661 27659661 G T NRBP1 Nonsense_Mutation p.E235* 0.36 TCGA-66-2785-01 2 27800538 27800538 A G C2orf16 Missense_Mutation p.K367E 0.15 tolerated(1) benign(0.001) TCGA-66-2785-01 2 27802036 27802036 C G C2orf16 Missense_Mutation p.S866C 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-66-2785-01 2 29158396 29158396 C G WDR43 Missense_Mutation p.Q483E 0.15 deleterious(0.04) possibly_damaging(0.843) TCGA-66-2785-01 2 29296852 29296852 C T C2orf71 Silent p.L92L 0.13 TCGA-66-2785-01 2 31590862 31590862 T C XDH Missense_Mutation p.K721R 0.29 deleterious(0.02) benign(0.009) TCGA-66-2785-01 2 32476252 32476252 G C NLRC4 Missense_Mutation p.I227M 0.16 tolerated(0.06) benign(0.257) TCGA-66-2785-01 2 37229651 37229651 G C HEATR5B Silent p.L1705L 0.13 TCGA-66-2785-01 2 37276911 37276911 G C HEATR5B Missense_Mutation p.L861V 0.21 deleterious(0.02) possibly_damaging(0.534) TCGA-66-2785-01 2 38975246 38975246 C G SRSF7 Missense_Mutation p.R172T 0.14 tolerated(0.14) unknown(0) TCGA-66-2785-01 2 44115753 44115753 C A LRPPRC Nonsense_Mutation p.E1391* 0.09 TCGA-66-2785-01 2 44139579 44139579 C G LRPPRC Silent p.V1089V 0.17 TCGA-66-2785-01 2 44566303 44566303 C G PREPL Missense_Mutation p.E318Q 0.15 tolerated(0.25) benign(0.262) TCGA-66-2785-01 2 55549772 55549772 C G CCDC88A Missense_Mutation p.Q1017H 0.32 tolerated(0.12) benign(0.029) TCGA-66-2785-01 2 56603003 56603003 C G CCDC85A Missense_Mutation p.S502C 0.15 tolerated_low_confidence(0.16) possibly_damaging(0.628) TCGA-66-2785-01 2 60689006 60689006 C G BCL11A Missense_Mutation p.Q347H 0.06 tolerated(0.15) probably_damaging(0.989) TCGA-66-2785-01 2 61275900 61275900 C G PEX13 Missense_Mutation p.L403V 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.556) TCGA-66-2785-01 2 62729924 62729924 C T TMEM17 Missense_Mutation p.E36K 0.13 deleterious(0.04) possibly_damaging(0.718) TCGA-66-2785-01 2 63092065 63092065 C G EHBP1 Silent p.L354L 0.13 TCGA-66-2785-01 2 63175914 63175914 G T EHBP1 Missense_Mutation p.A680S 0.21 tolerated_low_confidence(0.08) benign(0.017) TCGA-66-2785-01 2 65299333 65299333 C G CEP68 Missense_Mutation p.S368C 0.15 tolerated(0.05) benign(0.077) TCGA-66-2785-01 2 68872938 68872938 A T PROKR1 5'UTR 0.31 TCGA-66-2785-01 2 74438937 74438937 G C MTHFD2 Missense_Mutation p.R278T 0.30 deleterious(0) possibly_damaging(0.491) TCGA-66-2785-01 2 74598706 74598706 G C DCTN1 Silent p.L201L 0.19 TCGA-66-2785-01 2 74758161 74758161 C G HTRA2 Missense_Mutation p.Q279E 0.14 deleterious(0.01) probably_damaging(0.989) TCGA-66-2785-01 2 80801373 80801373 C T CTNNA2 Silent p.F609F 0.13 TCGA-66-2785-01 2 86090577 86090577 C T ST3GAL5 Silent p.L38L 0.19 TCGA-66-2785-01 2 8822189 8822189 C G ID2 5'UTR 0.27 TCGA-66-2785-01 2 8930169 8930169 C G KIDINS220 Missense_Mutation p.G488R 0.10 tolerated(1) possibly_damaging(0.899) TCGA-66-2785-01 2 89521864 89521864 C G IGKV2-28 Missense_Mutation p.G17R 0.14 deleterious(0.02) benign(0.068) TCGA-66-2785-01 2 90121687 90121687 G T IGKV1D-17 Silent p.L10L 0.09 TCGA-66-2785-01 2 96646478 96646478 G A ANKRD36C Silent p.L217L 0.09 TCGA-66-2785-01 2 97492602 97492602 C G CNNM3 Missense_Mutation p.L468V 0.14 tolerated(0.43) benign(0.083) TCGA-66-2785-01 2 97492629 97492629 G A CNNM3 Missense_Mutation p.E477K 0.11 deleterious(0) possibly_damaging(0.777) TCGA-66-2785-01 2 99012792 99012792 G A CNGA3 Missense_Mutation p.V387M 0.40 deleterious(0.01) probably_damaging(0.951) TCGA-66-2785-01 3 100087936 100087936 T C TOMM70A Missense_Mutation p.Y499C 0.35 deleterious(0) probably_damaging(0.979) TCGA-66-2785-01 3 100471741 100471741 G C ABI3BP Nonsense_Mutation p.S960* 0.17 TCGA-66-2785-01 3 100569558 100569558 C G ABI3BP Missense_Mutation p.D416H 0.11 deleterious(0) possibly_damaging(0.861) TCGA-66-2785-01 3 100992587 100992587 C G IMPG2 Splice_Site p.X223_splice 0.18 TCGA-66-2785-01 3 101283965 101283965 G A TRMT10C Missense_Mutation p.E114K 0.15 deleterious(0) probably_damaging(0.928) TCGA-66-2785-01 3 10318076 10318076 C G TATDN2 Missense_Mutation p.S622C 0.27 deleterious(0) probably_damaging(0.93) TCGA-66-2785-01 3 108572674 108572674 C T TRAT1 Missense_Mutation p.P171S 0.15 deleterious(0) probably_damaging(1) TCGA-66-2785-01 3 108672423 108672423 T C GUCA1C Missense_Mutation p.T63A 0.18 tolerated(0.28) benign(0.133) TCGA-66-2785-01 3 108776334 108776334 C T MORC1 Splice_Site p.X344_splice 0.31 TCGA-66-2785-01 3 113222068 113222068 C A SPICE1 Missense_Mutation p.V36L 0.10 deleterious(0) benign(0.1) TCGA-66-2785-01 3 11399906 11399906 C G ATG7 Missense_Mutation p.F433L 0.18 tolerated(0.51) benign(0.002) TCGA-66-2785-01 3 118865008 118865008 A T C3orf30 5'UTR 0.26 TCGA-66-2785-01 3 119134125 119134125 G T ARHGAP31 Missense_Mutation p.D1117Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-66-2785-01 3 121416258 121416258 C G GOLGB1 Missense_Mutation p.E1038Q 0.04 benign(0.168) TCGA-66-2785-01 3 125166591 125166591 A G SNX4 3'UTR 0.13 TCGA-66-2785-01 3 127294892 127294892 C A TPRA1 Missense_Mutation p.G167V 0.11 deleterious(0) possibly_damaging(0.825) TCGA-66-2785-01 3 130735088 130735088 C T ASTE1 Missense_Mutation p.D537N 0.11 tolerated(0.06) possibly_damaging(0.743) TCGA-66-2785-01 3 133547652 133547652 C G RAB6B Missense_Mutation p.E203Q 0.14 tolerated_low_confidence(0.42) benign(0.01) TCGA-66-2785-01 3 134960004 134960004 T C EPHB1 Silent p.P787P 0.12 TCGA-66-2785-01 3 135721224 135721224 A T PPP2R3A Missense_Mutation p.E295V 0.21 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-66-2785-01 3 138189849 138189849 C T ESYT3 Missense_Mutation p.S574F 0.17 deleterious(0) probably_damaging(0.998) TCGA-66-2785-01 3 138407817 138407817 C A PIK3CB Splice_Site p.X679_splice 0.19 TCGA-66-2785-01 3 142166720 142166720 C G XRN1 Missense_Mutation p.E23Q 0.09 deleterious(0) possibly_damaging(0.833) TCGA-66-2785-01 3 142178163 142178163 C T ATR Missense_Mutation p.E2419K 0.06 tolerated(0.28) probably_damaging(0.999) TCGA-66-2785-01 3 142215323 142215323 C G ATR Missense_Mutation p.Q1926H 0.17 deleterious(0.01) probably_damaging(1) TCGA-66-2785-01 3 142224118 142224118 C G ATR Missense_Mutation p.D1687H 0.28 deleterious(0) probably_damaging(1) TCGA-66-2785-01 3 145912102 145912102 G A PLSCR4 3'UTR 0.08 TCGA-66-2785-01 3 158980417 158980417 C G IQCJ-SCHIP1 Nonsense_Mutation p.S79* 0.05 TCGA-66-2785-01 3 160132222 160132222 G C SMC4 Missense_Mutation p.D397H 0.11 deleterious(0.02) probably_damaging(0.934) TCGA-66-2785-01 3 167413428 167413428 G A PDCD10 Silent p.I117I 0.22 TCGA-66-2785-01 3 170219054 170219054 C A SLC7A14 Nonsense_Mutation p.E129* 0.12 TCGA-66-2785-01 3 170219055 170219055 C A SLC7A14 Silent p.G128G 0.11 TCGA-66-2785-01 3 172165395 172165395 C G GHSR Intron 0.07 TCGA-66-2785-01 3 175520973 175520973 C G NAALADL2 Silent p.V790V 0.17 TCGA-66-2785-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.10 deleterious(0.02) probably_damaging(0.959) TCGA-66-2785-01 3 179597731 179597731 G T PEX5L Nonsense_Mutation p.S164* 0.14 TCGA-66-2785-01 3 182925608 182925608 C A MCF2L2 Missense_Mutation p.D834Y 0.12 deleterious(0) probably_damaging(0.987) TCGA-66-2785-01 3 18390710 18390710 C G SATB1 Missense_Mutation p.E780D 0.15 tolerated_low_confidence(0.2) benign(0.006) TCGA-66-2785-01 3 186038361 186038361 C T DGKG 5'UTR 0.11 TCGA-66-2785-01 3 192516720 192516720 G C MB21D2 Missense_Mutation p.Q311E 0.07 tolerated(0.19) possibly_damaging(0.569) TCGA-66-2785-01 3 194790285 194790285 C T XXYLT1 3'UTR 0.25 TCGA-66-2785-01 3 19554619 19554619 A T KCNH8 Missense_Mutation p.K746I 0.16 tolerated(0.09) possibly_damaging(0.713) TCGA-66-2785-01 3 196386967 196386967 C T NRROS Silent p.L151L 0.16 TCGA-66-2785-01 3 25657068 25657068 C G TOP2B Missense_Mutation p.E1116Q 0.36 tolerated(0.12) benign(0.041) TCGA-66-2785-01 3 27424683 27424683 C - SLC4A7 Frame_Shift_Del p.G1175Efs*11 0.31 TCGA-66-2785-01 3 27477968 27477968 G C SLC4A7 Missense_Mutation p.S158C 0.13 deleterious(0) probably_damaging(0.999) TCGA-66-2785-01 3 27498162 27498162 G A SLC4A7 Missense_Mutation p.R5C 0.22 deleterious_low_confidence(0.01) benign(0) TCGA-66-2785-01 3 3084769 3084769 C T CNTN4 Missense_Mutation p.H874Y 0.13 tolerated(1) benign(0.005) TCGA-66-2785-01 3 31703502 31703502 C G OSBPL10 3'UTR 0.21 TCGA-66-2785-01 3 38158765 38158765 G C DLEC1 Missense_Mutation p.D1458H 0.08 tolerated(0.07) benign(0.303) TCGA-66-2785-01 3 38359765 38359765 C T SLC22A14 3'UTR 0.12 TCGA-66-2785-01 3 407692 407692 G C CHL1 Missense_Mutation p.E549Q 0.11 tolerated(1) benign(0.098) TCGA-66-2785-01 3 42799624 42799624 C G CCDC13 Missense_Mutation p.E72Q 0.12 tolerated(0.32) benign(0.094) TCGA-66-2785-01 3 44685566 44685566 G T ZNF197 Missense_Mutation p.D982Y 0.10 tolerated(0.06) possibly_damaging(0.452) TCGA-66-2785-01 3 45637322 45637322 G T LIMD1 Silent p.G317G 0.40 TCGA-66-2785-01 3 46062519 46062519 G C XCR1 Missense_Mutation p.F307L 0.11 tolerated(0.78) benign(0) TCGA-66-2785-01 3 4716893 4716893 G A ITPR1 Missense_Mutation p.E899K 0.09 tolerated(0.37) benign(0.066) TCGA-66-2785-01 3 48266924 48266924 T C CAMP 3'UTR 0.17 TCGA-66-2785-01 3 49724666 49724666 C A MST1 Missense_Mutation p.D175Y 0.13 deleterious(0) probably_damaging(0.993) TCGA-66-2785-01 3 52085122 52085122 C T DUSP7 Silent p.K323K 0.20 TCGA-66-2785-01 3 52085139 52085139 C G DUSP7 Splice_Site p.X318_splice 0.22 TCGA-66-2785-01 3 52088272 52088272 G C DUSP7 Missense_Mutation p.I212M 0.36 deleterious(0) probably_damaging(1) TCGA-66-2785-01 3 52821623 52821623 G C ITIH1 Missense_Mutation p.R640T 0.14 tolerated(0.17) benign(0.15) TCGA-66-2785-01 3 53766064 53766064 G C CACNA1D Missense_Mutation p.E830Q 0.17 tolerated(0.25) benign(0.094) TCGA-66-2785-01 3 56469061 56469061 G C ERC2 5'UTR 0.15 TCGA-66-2785-01 3 57545193 57545193 G C PDE12 Intron 0.18 TCGA-66-2785-01 3 58112437 58112437 C T FLNB Silent p.F1390F 0.17 TCGA-66-2785-01 3 58368400 58368400 C G PXK Missense_Mutation p.P121A 0.11 deleterious(0.03) possibly_damaging(0.649) TCGA-66-2785-01 3 58555429 58555429 C T FAM107A Missense_Mutation p.M53I 0.15 tolerated(0.09) benign(0.025) TCGA-66-2785-01 3 62860795 62860795 G C CADPS 5'UTR 0.36 TCGA-66-2785-01 3 77542411 77542411 C G ROBO2 Silent p.L244L 0.11 TCGA-66-2785-01 3 88040884 88040884 T C HTR1F Missense_Mutation p.S329P 0.20 tolerated(0.16) probably_damaging(0.917) TCGA-66-2785-01 3 8940593 8940593 G T RAD18 Nonsense_Mutation p.S436* 0.07 TCGA-66-2785-01 3 93781904 93781904 C G NSUN3 5'UTR 0.14 TCGA-66-2785-01 3 97806130 97806130 C G OR5AC2 Silent p.L38L 0.16 TCGA-66-2785-01 3 9784741 9784741 C G BRPF1 Silent p.L705L 0.25 TCGA-66-2785-01 3 9868872 9868872 G C TTLL3 Missense_Mutation p.D499H 0.10 deleterious(0.01) possibly_damaging(0.487) TCGA-66-2785-01 3 99514504 99514504 G C COL8A1 Missense_Mutation p.D587H 0.12 tolerated(0.17) possibly_damaging(0.623) TCGA-66-2785-01 3 9956229 9956229 C G IL17RE Intron 0.13 TCGA-66-2785-01 3 9991146 9991146 G A PRRT3 Silent p.V218V 0.06 TCGA-66-2785-01 4 104512829 104512829 C G TACR3 Missense_Mutation p.M300I 0.21 deleterious(0) probably_damaging(0.993) TCGA-66-2785-01 4 115597237 115597237 T G UGT8 Missense_Mutation p.F473L 0.20 tolerated(0.09) probably_damaging(0.998) TCGA-66-2785-01 4 122082298 122082298 C T TNIP3 Missense_Mutation p.R124K 0.14 tolerated(0.17) benign(0.069) TCGA-66-2785-01 4 123179939 123179939 G C KIAA1109 Missense_Mutation p.E2235Q 0.21 benign(0.316) TCGA-66-2785-01 4 123270402 123270402 G A KIAA1109 Missense_Mutation p.R4457K 0.04 possibly_damaging(0.809) TCGA-66-2785-01 4 126241507 126241507 C G FAT4 Missense_Mutation p.S1314C 0.19 possibly_damaging(0.827) TCGA-66-2785-01 4 129131302 129131302 A G LARP1B 3'UTR 0.43 TCGA-66-2785-01 4 134073056 134073056 T A PCDH10 Silent p.R587R 0.12 TCGA-66-2785-01 4 134073059 134073059 G T PCDH10 Missense_Mutation p.E588D 0.11 tolerated(0.07) possibly_damaging(0.578) TCGA-66-2785-01 4 1341946 1341946 G C UVSSA Missense_Mutation p.E23Q 0.15 tolerated(0.15) benign(0.081) TCGA-66-2785-01 4 146080657 146080657 G C OTUD4 Missense_Mutation p.C144W 0.31 tolerated(0.18) benign(0.337) TCGA-66-2785-01 4 148453689 148453689 C T EDNRA Nonsense_Mutation p.Q194* 0.22 TCGA-66-2785-01 4 151000154 151000154 T C DCLK2 5'Flank 0.28 TCGA-66-2785-01 4 155249247 155249247 G A DCHS2 Missense_Mutation p.S884L 0.16 deleterious(0.03) possibly_damaging(0.575) TCGA-66-2785-01 4 155490729 155490729 T C FGB Missense_Mutation p.L341S 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-66-2785-01 4 159956200 159956200 G C C4orf45 Missense_Mutation p.Q17E 0.47 deleterious(0.02) benign(0.074) TCGA-66-2785-01 4 176622910 176622910 C G GPM6A Missense_Mutation p.E16Q 0.16 deleterious(0.02) probably_damaging(0.997) TCGA-66-2785-01 4 177070988 177070988 C G WDR17 Missense_Mutation p.T667S 0.04 tolerated(0.1) probably_damaging(0.997) TCGA-66-2785-01 4 184175070 184175070 G C WWC2 Missense_Mutation p.E372Q 0.13 deleterious(0.04) benign(0.111) TCGA-66-2785-01 4 184240570 184240570 G C CLDN22 3'UTR 0.16 TCGA-66-2785-01 4 184932482 184932482 G C STOX2 Missense_Mutation p.D831H 0.20 deleterious_low_confidence(0) possibly_damaging(0.68) TCGA-66-2785-01 4 187173216 187173216 C G KLKB1 Missense_Mutation p.S397C 0.13 deleterious(0) probably_damaging(0.957) TCGA-66-2785-01 4 187195492 187195492 C - F11 Intron 0.31 TCGA-66-2785-01 4 188924950 188924950 C A ZFP42 3'UTR 0.25 TCGA-66-2785-01 4 189020233 189020233 C A TRIML2 Nonsense_Mutation p.E143* 0.13 TCGA-66-2785-01 4 1941612 1941612 C G WHSC1 Intron 0.28 TCGA-66-2785-01 4 39904022 39904022 C T PDS5A Missense_Mutation p.E482K 0.10 deleterious(0.01) probably_damaging(0.979) TCGA-66-2785-01 4 40438646 40438646 C G RBM47 Missense_Mutation p.R381P 0.17 tolerated(0.09) probably_damaging(0.995) TCGA-66-2785-01 4 41648662 41648662 G C LIMCH1 Missense_Mutation p.E473Q 0.21 tolerated(0.05) benign(0.433) TCGA-66-2785-01 4 41956198 41956198 G A TMEM33 Silent p.L242L 0.22 TCGA-66-2785-01 4 42602532 42602532 A - ATP8A1 Frame_Shift_Del p.L138* 0.25 TCGA-66-2785-01 4 44450335 44450335 G T KCTD8 Missense_Mutation p.T69N 0.32 deleterious(0) benign(0.366) TCGA-66-2785-01 4 47938785 47938785 G A CNGA1 Missense_Mutation p.L645F 0.39 deleterious(0) probably_damaging(1) TCGA-66-2785-01 4 47939043 47939043 C G CNGA1 Missense_Mutation p.E559Q 0.15 deleterious(0.04) probably_damaging(0.919) TCGA-66-2785-01 4 52860520 52860520 T C LRRC66 3'UTR 0.31 TCGA-66-2785-01 4 53579444 53579444 T C SNORA26 RNA 0.18 TCGA-66-2785-01 4 57181915 57181915 C A KIAA1211 Silent p.P749P 0.38 TCGA-66-2785-01 4 57797315 57797315 A T REST Missense_Mutation p.E764V 0.38 deleterious_low_confidence(0.05) benign(0.245) TCGA-66-2785-01 4 69100194 69100194 G A TMPRSS11B Silent p.S152S 0.33 TCGA-66-2785-01 4 69100195 69100195 G T TMPRSS11B Missense_Mutation p.S152Y 0.33 deleterious(0) possibly_damaging(0.87) TCGA-66-2785-01 4 73178020 73178020 C T ADAMTS3 Missense_Mutation p.E637K 0.17 deleterious(0) possibly_damaging(0.885) TCGA-66-2785-01 4 74318154 74318154 G A AFP Missense_Mutation p.E489K 0.21 tolerated(0.12) possibly_damaging(0.825) TCGA-66-2785-01 4 83978197 83978197 G A COPS4 Missense_Mutation p.E177K 0.42 tolerated(0.3) possibly_damaging(0.616) TCGA-66-2785-01 4 85611771 85611771 C A WDFY3 Missense_Mutation p.C3084F 0.29 deleterious(0) probably_damaging(0.984) TCGA-66-2785-01 4 89352393 89352393 C G HERC6 Missense_Mutation p.T729S 0.17 deleterious(0.04) probably_damaging(0.991) TCGA-66-2785-01 4 89668850 89668850 T C FAM13A Missense_Mutation p.T772A 0.18 deleterious(0) probably_damaging(0.927) TCGA-66-2785-01 4 96762179 96762179 G C PDHA2 Missense_Mutation p.S293T 0.31 deleterious(0) probably_damaging(0.994) TCGA-66-2785-01 4 9828003 9828003 C A SLC2A9 3'UTR 0.38 TCGA-66-2785-01 5 101572469 101572469 C A SLCO4C1 3'UTR 0.24 TCGA-66-2785-01 5 10236624 10236624 C A FAM173B Missense_Mutation p.G137V 0.09 tolerated(0.21) benign(0.219) TCGA-66-2785-01 5 11117664 11117664 G A CTNND2 Silent p.A725A 0.27 TCGA-66-2785-01 5 112487112 112487112 G T MCC Nonsense_Mutation p.S212* 0.30 TCGA-66-2785-01 5 113831614 113831614 T A KCNN2 Missense_Mutation p.M492K 0.23 deleterious(0) benign(0.046) TCGA-66-2785-01 5 121487777 121487777 G T ZNF474 Missense_Mutation p.G31V 0.21 tolerated(0.22) probably_damaging(0.972) TCGA-66-2785-01 5 127671680 127671680 C G FBN2 Missense_Mutation p.D1242H 0.25 deleterious(0) possibly_damaging(0.784) TCGA-66-2785-01 5 134086449 134086449 A T CAMLG Missense_Mutation p.S234C 0.18 tolerated(0.17) possibly_damaging(0.712) TCGA-66-2785-01 5 134131738 134131738 G C DDX46 Missense_Mutation p.E618Q 0.05 deleterious(0.03) benign(0.41) TCGA-66-2785-01 5 134223872 134223872 G A TXNDC15 Silent p.Q197Q 0.10 TCGA-66-2785-01 5 137276119 137276119 C T PKD2L2 3'UTR 0.13 TCGA-66-2785-01 5 140080051 140080051 G T ZMAT2 Silent p.A2A 0.18 TCGA-66-2785-01 5 140180824 140180824 G C PCDHA3 Silent p.L14L 0.15 TCGA-66-2785-01 5 140229714 140229714 T C PCDHA9 Missense_Mutation p.L545P 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-66-2785-01 5 140530988 140530988 G T PCDHB6 Nonsense_Mutation p.E384* 0.11 TCGA-66-2785-01 5 140553281 140553281 C T PCDHB7 Missense_Mutation p.L289F 0.18 tolerated_low_confidence(0.48) benign(0.011) TCGA-66-2785-01 5 140588647 140588647 G C PCDHB12 Silent p.V56V 0.14 TCGA-66-2785-01 5 140811775 140811775 G C PCDHGA12 Missense_Mutation p.E483D 0.07 tolerated_low_confidence(0.15) benign(0.098) TCGA-66-2785-01 5 140866045 140866045 C G PCDHGC4 Silent p.L435L 0.18 TCGA-66-2785-01 5 148679189 148679191 AGC TT AFAP1L1 Frame_Shift_Del p.Q45Lfs*13 0.32 TCGA-66-2785-01 5 148695757 148695757 G C AFAP1L1 Missense_Mutation p.M386I 0.24 tolerated(0.06) benign(0.004) TCGA-66-2785-01 5 150028853 150028853 C G SYNPO Nonsense_Mutation p.S583* 0.19 TCGA-66-2785-01 5 150275763 150275763 A T ZNF300 Silent p.V362V 0.20 TCGA-66-2785-01 5 150310845 150310845 G A ZNF300P1 RNA 0.26 TCGA-66-2785-01 5 150436437 150436437 C T TNIP1 Missense_Mutation p.E173K 0.15 tolerated(0.2) probably_damaging(0.996) TCGA-66-2785-01 5 156593241 156593241 G C FAM71B 5'UTR 0.14 TCGA-66-2785-01 5 156787316 156787316 G T CYFIP2 Silent p.V922V 0.18 TCGA-66-2785-01 5 158223456 158223456 G C EBF1 Missense_Mutation p.P269R 0.25 deleterious(0) probably_damaging(0.999) TCGA-66-2785-01 5 171520427 171520427 G C STK10 Missense_Mutation p.L515V 0.23 tolerated(0.29) possibly_damaging(0.907) TCGA-66-2785-01 5 171765617 171765617 T C SH3PXD2B Missense_Mutation p.K831R 0.14 tolerated_low_confidence(0.17) benign(0.005) TCGA-66-2785-01 5 176001165 176001165 A G CDHR2 Missense_Mutation p.I163V 0.15 deleterious(0) possibly_damaging(0.718) TCGA-66-2785-01 5 176520456 176520456 G A FGFR4 Missense_Mutation p.R434Q 0.24 deleterious(0) probably_damaging(0.996) TCGA-66-2785-01 5 179016623 179016623 G A RUFY1 Missense_Mutation p.R368Q 0.15 tolerated(0.23) probably_damaging(0.995) TCGA-66-2785-01 5 179045211 179045211 C G HNRNPH1 Missense_Mutation p.R217T 0.14 tolerated(0.17) possibly_damaging(0.811) TCGA-66-2785-01 5 179201470 179201470 C G MAML1 Missense_Mutation p.F881L 0.25 tolerated(0.23) benign(0.016) TCGA-66-2785-01 5 21765088 21765088 T A CDH12 Missense_Mutation p.Q505L 0.24 deleterious(0) possibly_damaging(0.613) TCGA-66-2785-01 5 22078562 22078562 A G CDH12 Missense_Mutation p.V75A 0.27 deleterious(0) probably_damaging(0.915) TCGA-66-2785-01 5 22078567 22078567 C A CDH12 Missense_Mutation p.Q73H 0.28 tolerated(0.18) probably_damaging(0.975) TCGA-66-2785-01 5 31468104 31468104 G A DROSHA Missense_Mutation p.P770S 0.22 deleterious(0.02) possibly_damaging(0.878) TCGA-66-2785-01 5 33684141 33684141 C G ADAMTS12 Missense_Mutation p.Q218H 0.08 tolerated(0.14) benign(0.013) TCGA-66-2785-01 5 34020465 34020465 G A C1QTNF3 3'UTR 0.20 TCGA-66-2785-01 5 36037942 36037942 C A UGT3A2 Nonsense_Mutation p.E418* 0.11 TCGA-66-2785-01 5 36168476 36168476 G T SKP2 Missense_Mutation p.G200C 0.31 deleterious(0.03) possibly_damaging(0.636) TCGA-66-2785-01 5 37048604 37048604 G T NIPBL Missense_Mutation p.G2197V 0.21 deleterious(0) probably_damaging(1) TCGA-66-2785-01 5 37183312 37183312 G C C5orf42 Missense_Mutation p.I1657M 0.12 tolerated(0.16) benign(0.019) TCGA-66-2785-01 5 37183337 37183337 G A C5orf42 Missense_Mutation p.S1649L 0.11 tolerated(0.12) benign(0.031) TCGA-66-2785-01 5 37816081 37816081 G C GDNF Missense_Mutation p.S120C 0.14 deleterious(0.02) possibly_damaging(0.889) TCGA-66-2785-01 5 38921868 38921868 C T OSMR Silent p.P579P 0.36 TCGA-66-2785-01 5 41051135 41051135 C T MROH2B Missense_Mutation p.E430K 0.09 tolerated(0.24) benign(0.016) TCGA-66-2785-01 5 43547890 43547890 C T PAIP1 Silent p.L187L 0.29 TCGA-66-2785-01 5 44809298 44809298 G A MRPS30 Silent p.E78E 0.15 TCGA-66-2785-01 5 44813255 44813255 C T MRPS30 Silent p.L301L 0.10 TCGA-66-2785-01 5 5200278 5200278 G T ADAMTS16 Missense_Mutation p.M449I 0.10 tolerated(0.41) benign(0.006) TCGA-66-2785-01 5 56778368 56778368 C G ACTBL2 Missense_Mutation p.G56A 0.16 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-66-2785-01 5 6337260 6337260 C T CTD-2324F15.2 Intron 0.15 TCGA-66-2785-01 5 65449396 65449396 A C SREK1 Missense_Mutation p.R89S 0.19 deleterious(0) probably_damaging(0.994) TCGA-66-2785-01 5 67592064 67592064 G C PIK3R1 Missense_Mutation p.G627A 0.17 deleterious(0.05) possibly_damaging(0.831) TCGA-66-2785-01 5 74134873 74134873 C A FAM169A Missense_Mutation p.V79L 0.22 deleterious(0.03) possibly_damaging(0.902) TCGA-66-2785-01 5 7727363 7727363 C A ADCY2 Silent p.L620L 0.17 TCGA-66-2785-01 5 7727364 7727364 G A ADCY2 Missense_Mutation p.V621M 0.17 deleterious(0) benign(0.102) TCGA-66-2785-01 5 7835508 7835508 T C C5orf49 Missense_Mutation p.H84R 0.19 tolerated(0.19) benign(0.009) TCGA-66-2785-01 5 7900156 7900156 G C MTRR Missense_Mutation p.Q721H 0.25 deleterious(0) probably_damaging(0.999) TCGA-66-2785-01 5 80408537 80408537 A G RASGRF2 Silent p.E649E 0.22 TCGA-66-2785-01 5 82554407 82554407 A T XRCC4 Silent p.P268P 0.18 TCGA-66-2785-01 5 82833254 82833254 G C VCAN Missense_Mutation p.E1478Q 0.26 deleterious(0) probably_damaging(0.962) TCGA-66-2785-01 5 93076968 93076968 G A POU5F2 Missense_Mutation p.P101L 0.20 tolerated(0.24) benign(0) TCGA-66-2785-01 5 94903634 94903634 G C ARSK Missense_Mutation p.W99C 0.19 deleterious(0) probably_damaging(1) TCGA-66-2785-01 5 95224604 95224604 C T ELL2 Missense_Mutation p.D632N 0.10 deleterious(0.02) benign(0.391) TCGA-66-2785-01 5 95224673 95224673 C A ELL2 Nonsense_Mutation p.E609* 0.17 TCGA-66-2785-01 5 98262090 98262090 T C CHD1 Translation_Start_Site p.M1? 0.26 deleterious_low_confidence(0) benign(0.019) TCGA-66-2785-01 6 100062549 100062549 A G PRDM13 Missense_Mutation p.K680E 0.29 tolerated_low_confidence(0.12) benign(0.261) TCGA-66-2785-01 6 100838121 100838121 C T SIM1 3'UTR 0.47 TCGA-66-2785-01 6 101095199 101095199 C G ASCC3 Missense_Mutation p.L1127F 0.10 deleterious(0.01) possibly_damaging(0.819) TCGA-66-2785-01 6 102516482 102516482 A T GRIK2 3'UTR 0.20 TCGA-66-2785-01 6 10877569 10877569 G C GCM2 Missense_Mutation p.I49M 0.08 deleterious(0) probably_damaging(0.999) TCGA-66-2785-01 6 109867070 109867070 C G AK9 Missense_Mutation p.Q1075H 0.11 tolerated(0.1) benign(0.229) TCGA-66-2785-01 6 111634600 111634600 T C REV3L Silent p.K2853K 0.12 TCGA-66-2785-01 6 111737632 111737632 G C REV3L Silent p.L61L 0.22 TCGA-66-2785-01 6 112439049 112439049 C A LAMA4 Missense_Mutation p.G1625V 0.28 deleterious(0) probably_damaging(1) TCGA-66-2785-01 6 116747819 116747819 A C DSE Missense_Mutation p.N167H 0.14 tolerated(0.07) possibly_damaging(0.568) TCGA-66-2785-01 6 118635325 118635325 C G SLC35F1 Missense_Mutation p.D379E 0.18 tolerated(0.31) benign(0.011) TCGA-66-2785-01 6 126176272 126176272 G C NCOA7 Missense_Mutation p.D53H 0.09 deleterious_low_confidence(0) possibly_damaging(0.678) TCGA-66-2785-01 6 128304106 128304106 T C PTPRK Missense_Mutation p.H1142R 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-66-2785-01 6 132211700 132211700 A G ENPP1 3'UTR 0.17 TCGA-66-2785-01 6 132967047 132967047 G C TAAR1 Silent p.L32L 0.16 TCGA-66-2785-01 6 134495197 134495197 C G SGK1 Missense_Mutation p.L153F 0.16 tolerated(0.06) possibly_damaging(0.601) TCGA-66-2785-01 6 136512787 136512787 G T PDE7B Nonsense_Mutation p.E388* 0.11 TCGA-66-2785-01 6 136904834 136904834 G C MAP3K5 Silent p.L1090L 0.13 TCGA-66-2785-01 6 1390815 1390815 G T FOXF2 Silent p.V211V 0.10 TCGA-66-2785-01 6 142409670 142409670 G C NMBR Missense_Mutation p.I42M 0.15 tolerated(0.05) benign(0.372) TCGA-66-2785-01 6 144878290 144878290 C G UTRN Intron 0.16 TCGA-66-2785-01 6 149899972 149899972 C G GINM1 Missense_Mutation p.L98V 0.08 tolerated(0.16) possibly_damaging(0.858) TCGA-66-2785-01 6 151917551 151917551 G T CCDC170 Nonsense_Mutation p.E517* 0.12 TCGA-66-2785-01 6 152532704 152532704 A C SYNE1 Missense_Mutation p.F7505C 0.18 probably_damaging(0.995) TCGA-66-2785-01 6 152629663 152629663 A G SYNE1 Silent p.S5769S 0.32 TCGA-66-2785-01 6 152697611 152697611 G A SYNE1 Nonsense_Mutation p.Q3077* 0.16 TCGA-66-2785-01 6 153078286 153078286 C A VIP 3'UTR 0.19 TCGA-66-2785-01 6 159670162 159670162 C G FNDC1 Missense_Mutation p.I1594M 0.17 tolerated(0.07) possibly_damaging(0.473) TCGA-66-2785-01 6 160176217 160176217 A T WTAP Silent p.T255T 0.22 TCGA-66-2785-01 6 160198422 160198422 C G ACAT2 Silent p.S282S 0.25 TCGA-66-2785-01 6 160468358 160468358 C G IGF2R Missense_Mutation p.P740R 0.09 deleterious(0) probably_damaging(1) TCGA-66-2785-01 6 161470172 161470172 G C MAP3K4 Missense_Mutation p.A290P 0.14 deleterious(0.04) possibly_damaging(0.696) TCGA-66-2785-01 6 163985801 163985801 A T QKI Intron 0.38 TCGA-66-2785-01 6 168226279 168226279 G A MLLT4 5'Flank 0.19 TCGA-66-2785-01 6 170639566 170639566 G C FAM120B Missense_Mutation p.E649Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-66-2785-01 6 21595968 21595968 C G SOX4 Missense_Mutation p.F401L 0.67 tolerated(0.56) unknown(0) TCGA-66-2785-01 6 24848350 24848350 G C FAM65B Nonsense_Mutation p.S327* 0.10 TCGA-66-2785-01 6 26156617 26156617 A G HIST1H1E 5'UTR 0.12 TCGA-66-2785-01 6 26157146 26157146 G T HIST1H1E Silent p.A176A 0.16 TCGA-66-2785-01 6 26197163 26197163 C G HIST1H3D Missense_Mutation p.E106Q 0.45 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-66-2785-01 6 26197472 26197472 G C HIST1H3D Missense_Mutation p.R3G 0.10 deleterious_low_confidence(0.04) benign(0.029) TCGA-66-2785-01 6 26377346 26377346 G A BTN3A2 3'UTR 0.25 TCGA-66-2785-01 6 26465625 26465625 C G BTN2A1 Missense_Mutation p.Q309E 0.09 tolerated(0.73) benign(0.057) TCGA-66-2785-01 6 26637466 26637466 C T ZNF322 3'UTR 0.60 TCGA-66-2785-01 6 27216714 27216714 C T PRSS16 Missense_Mutation p.S109L 0.21 deleterious(0) benign(0.063) TCGA-66-2785-01 6 27420473 27420473 C T ZNF184 Missense_Mutation p.E289K 0.18 tolerated(0.36) possibly_damaging(0.718) TCGA-66-2785-01 6 2890510 2890510 C G SERPINB9 Missense_Mutation p.E340Q 0.18 tolerated(0.47) benign(0.021) TCGA-66-2785-01 6 29054830 29054830 G C OR2B3 Missense_Mutation p.L66V 0.10 deleterious(0) probably_damaging(0.931) TCGA-66-2785-01 6 29275385 29275385 G C OR14J1 Missense_Mutation p.E307Q 0.27 tolerated(0.51) benign(0.303) TCGA-66-2785-01 6 29394418 29394418 G C OR11A1 3'UTR 0.19 TCGA-66-2785-01 6 30104956 30104956 C G TRIM40 Missense_Mutation p.S48C 0.13 deleterious(0.01) probably_damaging(0.986) TCGA-66-2785-01 6 30105078 30105078 C T TRIM40 Silent p.L89L 0.13 TCGA-66-2785-01 6 30523492 30523492 G C GNL1 Missense_Mutation p.Q27E 0.12 tolerated(0.99) benign(0.003) TCGA-66-2785-01 6 30624726 30624726 G C DHX16 Intron 0.08 TCGA-66-2785-01 6 31129585 31129585 G C TCF19 Missense_Mutation p.K200N 0.11 tolerated(0.45) benign(0.007) TCGA-66-2785-01 6 31599685 31599685 C T PRRC2A Missense_Mutation p.P1079S 0.15 unknown(0) TCGA-66-2785-01 6 31829147 31829147 C T NEU1 Missense_Mutation p.D145N 0.06 deleterious(0) probably_damaging(1) TCGA-66-2785-01 6 31996957 31996957 C G C4B Nonsense_Mutation p.S1173* 0.12 TCGA-66-2785-01 6 36041850 36041850 G A MAPK14 Missense_Mutation p.V158M 0.35 deleterious(0) probably_damaging(0.997) TCGA-66-2785-01 6 36870107 36870107 C A C6orf89 Silent p.L107L 0.04 TCGA-66-2785-01 6 36922627 36922627 G T PI16 Nonsense_Mutation p.E31* 0.07 TCGA-66-2785-01 6 37344705 37344705 G C RNF8 Missense_Mutation p.E378Q 0.10 deleterious(0) probably_damaging(0.998) TCGA-66-2785-01 6 38850814 38850814 G T DNAH8 Missense_Mutation p.A2446S 0.23 possibly_damaging(0.732) TCGA-66-2785-01 6 38866091 38866091 G C DNAH8 Missense_Mutation p.E2783Q 0.12 probably_damaging(0.986) TCGA-66-2785-01 6 38883047 38883047 A T DNAH8 Missense_Mutation p.D3128V 0.40 probably_damaging(0.996) TCGA-66-2785-01 6 40399929 40399929 G A LRFN2 Silent p.L308L 0.15 TCGA-66-2785-01 6 41704736 41704736 C A PGC Missense_Mutation p.G341C 0.05 deleterious(0.01) probably_damaging(0.954) TCGA-66-2785-01 6 42237280 42237280 C G TRERF1 Missense_Mutation p.E17Q 0.09 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-66-2785-01 6 43143550 43143550 C G SRF Missense_Mutation p.S296C 0.15 deleterious(0) possibly_damaging(0.515) TCGA-66-2785-01 6 43153205 43153205 C G CUL9 Missense_Mutation p.H203D 0.13 deleterious(0.01) probably_damaging(0.983) TCGA-66-2785-01 6 43153813 43153813 A G CUL9 Missense_Mutation p.R291G 0.20 tolerated(0.36) benign(0.008) TCGA-66-2785-01 6 43400778 43400778 C A ABCC10 Missense_Mutation p.Q354K 0.04 tolerated(0.97) probably_damaging(0.994) TCGA-66-2785-01 6 43417159 43417159 G C ABCC10 Splice_Site p.X1402_splice 0.06 TCGA-66-2785-01 6 43473279 43473279 G C TJAP1 Missense_Mutation p.D454H 0.06 tolerated(0.09) possibly_damaging(0.678) TCGA-66-2785-01 6 44116030 44116030 G A TMEM63B Silent p.L343L 0.10 TCGA-66-2785-01 6 44217143 44217143 G C HSP90AB1 Silent p.L59L 0.09 TCGA-66-2785-01 6 46620354 46620354 G A CYP39A1 5'UTR 0.22 TCGA-66-2785-01 6 46669616 46669616 G T TDRD6 Nonsense_Mutation p.E2095* 0.11 TCGA-66-2785-01 6 47762984 47762984 G C OPN5 Missense_Mutation p.K147N 0.17 tolerated(0.26) benign(0.006) TCGA-66-2785-01 6 49660378 49660378 C G CRISP2 3'UTR 0.09 TCGA-66-2785-01 6 49660474 49660474 T A CRISP2 3'UTR 0.34 TCGA-66-2785-01 6 52874338 52874338 G A ICK Missense_Mutation p.S507L 0.36 tolerated(0.31) benign(0) TCGA-66-2785-01 6 54254727 54254727 A G TINAG 3'UTR 0.22 TCGA-66-2785-01 6 5431349 5431349 G A FARS2 Missense_Mutation p.G283E 0.16 tolerated(0.05) benign(0.221) TCGA-66-2785-01 6 56470023 56470023 C G DST Intron 0.31 TCGA-66-2785-01 6 56482885 56482885 C G DST Intron 0.12 TCGA-66-2785-01 6 56504285 56504285 C G DST Missense_Mutation p.R404T 0.12 probably_damaging(0.996) TCGA-66-2785-01 6 64421998 64421998 C G PHF3 Nonsense_Mutation p.S1505* 0.15 TCGA-66-2785-01 6 69703688 69703688 G C BAI3 Missense_Mutation p.R588P 0.10 deleterious(0) possibly_damaging(0.897) TCGA-66-2785-01 6 70386398 70386398 G A LMBRD1 Missense_Mutation p.H485Y 0.12 tolerated(0.47) benign(0.007) TCGA-66-2785-01 6 70859600 70859600 C G COL19A1 Missense_Mutation p.A633G 0.36 deleterious(0.03) benign(0.054) TCGA-66-2785-01 6 71236201 71236201 G C FAM135A Silent p.L1138L 0.10 TCGA-66-2785-01 6 73815019 73815019 C A KCNQ5 Missense_Mutation p.L320I 0.22 tolerated(0.26) benign(0.063) TCGA-66-2785-01 6 74466381 74466381 C G CD109 Missense_Mutation p.Q217E 0.10 deleterious(0.02) benign(0.049) TCGA-66-2785-01 6 7584134 7584134 C G DSP Missense_Mutation p.I2213M 0.09 possibly_damaging(0.745) TCGA-66-2785-01 6 79650830 79650830 G C PHIP Missense_Mutation p.I1682M 0.03 tolerated_low_confidence(0.13) benign(0.039) TCGA-66-2785-01 6 83748181 83748181 T C UBE3D Silent p.V207V 0.23 TCGA-66-2785-01 6 90333770 90333770 G A ANKRD6 Silent p.V404V 0.30 TCGA-66-2785-01 6 90440532 90440532 C G MDN1 Missense_Mutation p.E1685Q 0.11 benign(0.029) TCGA-66-2785-01 6 90574048 90574048 G C CASP8AP2 RNA 0.09 TCGA-66-2785-01 6 90576206 90576206 A G CASP8AP2 RNA 0.31 TCGA-66-2785-01 6 90578413 90578413 C A CASP8AP2 RNA 0.40 TCGA-66-2785-01 6 93956688 93956688 C G EPHA7 Missense_Mutation p.E850Q 0.08 deleterious(0.01) possibly_damaging(0.628) TCGA-66-2785-01 6 97246284 97246284 G C GPR63 3'UTR 0.15 TCGA-66-2785-01 6 99283482 99283482 C T POU3F2 Missense_Mutation p.P245S 0.22 tolerated_low_confidence(0.48) benign(0.011) TCGA-66-2785-01 7 100211221 100211221 C T MOSPD3 Silent p.L135L 0.10 TCGA-66-2785-01 7 100421299 100421299 G A EPHB4 Silent p.L126L 0.09 TCGA-66-2785-01 7 100459086 100459086 C G SLC12A9 Silent p.L472L 0.10 TCGA-66-2785-01 7 100684352 100684352 G A MUC17 Missense_Mutation p.E3219K 0.12 benign(0.438) TCGA-66-2785-01 7 100852175 100852175 C G PLOD3 Missense_Mutation p.E583Q 0.09 deleterious(0.04) possibly_damaging(0.72) TCGA-66-2785-01 7 100884108 100884108 C T FIS1 Intron 0.11 TCGA-66-2785-01 7 102953585 102953585 G C PMPCB 3'UTR 0.16 TCGA-66-2785-01 7 105913032 105913032 G C NAMPT Missense_Mutation p.L131V 0.14 tolerated(0.1) benign(0.05) TCGA-66-2785-01 7 106508159 106508159 C G PIK3CG Missense_Mutation p.C51W 0.26 deleterious(0.02) benign(0.001) TCGA-66-2785-01 7 107240935 107240935 A T BCAP29 Missense_Mutation p.R192W 0.32 deleterious(0) possibly_damaging(0.882) TCGA-66-2785-01 7 107314718 107314718 G C SLC26A4 Missense_Mutation p.M175I 0.04 tolerated(0.46) benign(0) TCGA-66-2785-01 7 107849976 107849976 C T NRCAM Missense_Mutation p.E322K 0.06 tolerated(0.22) benign(0.001) TCGA-66-2785-01 7 108524189 108524189 C G C7orf66 Missense_Mutation p.D75H 0.10 deleterious_low_confidence(0.02) benign(0.381) TCGA-66-2785-01 7 112130094 112130094 C T LSMEM1 3'UTR 0.06 TCGA-66-2785-01 7 112415351 112415351 C T TMEM168 Missense_Mutation p.S384N 0.12 deleterious(0.01) benign(0.047) TCGA-66-2785-01 7 112461888 112461888 C G C7orf60 Missense_Mutation p.D377H 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.908) TCGA-66-2785-01 7 116397818 116397818 A T MET Missense_Mutation p.T698S 0.23 tolerated(0.74) benign(0.023) TCGA-66-2785-01 7 117864918 117864918 A T ANKRD7 Missense_Mutation p.N12Y 0.08 deleterious(0.05) benign(0.165) TCGA-66-2785-01 7 117880049 117880049 G T ANKRD7 3'UTR 0.14 TCGA-66-2785-01 7 119915141 119915141 C A KCND2 Missense_Mutation p.A152E 0.28 tolerated(1) benign(0.003) TCGA-66-2785-01 7 121653533 121653533 C T PTPRZ1 Missense_Mutation p.S1478F 0.14 tolerated_low_confidence(0.11) benign(0.015) TCGA-66-2785-01 7 122261611 122261611 G C CADPS2 Missense_Mutation p.S343C 0.10 deleterious(0) possibly_damaging(0.592) TCGA-66-2785-01 7 122261629 122261629 A C CADPS2 Nonsense_Mutation p.L337* 0.07 TCGA-66-2785-01 7 126173648 126173648 G - GRM8 Frame_Shift_Del p.I596Mfs*6 0.27 TCGA-66-2785-01 7 126410082 126410082 C A GRM8 Missense_Mutation p.Q398H 0.29 deleterious(0.01) probably_damaging(0.957) TCGA-66-2785-01 7 127222843 127222843 T A GCC1 Missense_Mutation p.E518V 0.13 deleterious(0) probably_damaging(0.948) TCGA-66-2785-01 7 12728313 12728313 C G ARL4A Nonsense_Mutation p.S145* 0.27 TCGA-66-2785-01 7 128807758 128807758 C G TSPAN33 3'UTR 0.25 TCGA-66-2785-01 7 129474754 129474754 C A UBE2H 3'UTR 0.07 TCGA-66-2785-01 7 134643009 134643009 A C CALD1 Missense_Mutation p.S677R 0.15 deleterious(0) probably_damaging(0.982) TCGA-66-2785-01 7 135291576 135291576 C G NUP205 Missense_Mutation p.L995V 0.13 deleterious(0) probably_damaging(0.915) TCGA-66-2785-01 7 135304536 135304536 A C NUP205 Splice_Site p.X1411_splice 0.14 TCGA-66-2785-01 7 138764635 138764635 G A ZC3HAV1 Missense_Mutation p.S351F 0.12 tolerated(0.19) probably_damaging(0.962) TCGA-66-2785-01 7 138968151 138968151 G T UBN2 Missense_Mutation p.A834S 0.13 deleterious_low_confidence(0.02) probably_damaging(0.989) TCGA-66-2785-01 7 142364528 142364528 C G TRBV24-1 Missense_Mutation p.R55G 0.16 deleterious(0.01) probably_damaging(0.934) TCGA-66-2785-01 7 142606708 142606708 G A TRPV5 Missense_Mutation p.R615C 0.20 tolerated(0.07) benign(0.082) TCGA-66-2785-01 7 144380014 144380014 C A TPK1 Missense_Mutation p.G58V 0.12 deleterious(0.03) possibly_damaging(0.817) TCGA-66-2785-01 7 14724925 14724925 G A DGKB Silent p.C258C 0.08 TCGA-66-2785-01 7 148769427 148769427 G C ZNF786 Missense_Mutation p.A146G 0.28 tolerated(0.34) benign(0.002) TCGA-66-2785-01 7 14880940 14880940 G T DGKB 5'UTR 0.19 TCGA-66-2785-01 7 149572732 149572732 C G ATP6V0E2 Silent p.L99L 0.04 TCGA-66-2785-01 7 150767389 150767389 C G SLC4A2 Missense_Mutation p.L469V 0.15 deleterious(0.05) probably_damaging(0.964) TCGA-66-2785-01 7 150846114 150846114 G T GBX1 Missense_Mutation p.F218L 0.13 tolerated(0.09) benign(0.437) TCGA-66-2785-01 7 151269752 151269752 C A PRKAG2 Missense_Mutation p.R350M 0.12 deleterious(0) probably_damaging(0.981) TCGA-66-2785-01 7 151292541 151292541 C G PRKAG2 Splice_Site p.X252_splice 0.19 TCGA-66-2785-01 7 151946970 151946970 G C KMT2C Missense_Mutation p.L602V 0.23 benign(0.017) TCGA-66-2785-01 7 152345752 152345752 C G XRCC2 Missense_Mutation p.G273A 0.19 tolerated(0.71) benign(0.002) TCGA-66-2785-01 7 15725928 15725928 C G MEOX2 Missense_Mutation p.D34H 0.13 deleterious(0) possibly_damaging(0.78) TCGA-66-2785-01 7 17833857 17833857 C G SNX13 Missense_Mutation p.E896Q 0.21 tolerated(0.09) benign(0.412) TCGA-66-2785-01 7 20782508 20782508 T A ABCB5 Nonsense_Mutation p.C1011* 0.28 TCGA-66-2785-01 7 20825394 20825394 C G SP8 Silent p.S14S 0.07 TCGA-66-2785-01 7 22852755 22852755 G C TOMM7 3'UTR 0.15 TCGA-66-2785-01 7 2473607 2473607 G T CHST12 3'UTR 0.12 TCGA-66-2785-01 7 27224326 27224326 T A HOXA11 Silent p.T146T 0.08 TCGA-66-2785-01 7 30402003 30402003 G C ZNRF2 Missense_Mutation p.E228Q 0.13 deleterious(0.04) benign(0.18) TCGA-66-2785-01 7 33014871 33014871 C G FKBP9 Missense_Mutation p.Q149E 0.14 tolerated(0.31) benign(0.003) TCGA-66-2785-01 7 44102386 44102386 C T PGAM2 Missense_Mutation p.A247T 0.23 deleterious(0.03) probably_damaging(0.966) TCGA-66-2785-01 7 44186117 44186117 C T GCK Missense_Mutation p.E323K 0.08 tolerated(0.11) benign(0.045) TCGA-66-2785-01 7 57188778 57188778 T C ZNF479 Missense_Mutation p.Y115C 0.22 deleterious(0.03) probably_damaging(0.923) TCGA-66-2785-01 7 66416110 66416110 G A TMEM248 Silent p.V256V 0.15 TCGA-66-2785-01 7 6771527 6771527 G T PMS2CL 5'Flank 0.13 TCGA-66-2785-01 7 6774964 6774964 G T PMS2CL RNA 0.28 TCGA-66-2785-01 7 70885909 70885909 A T WBSCR17 Silent p.L260L 0.29 TCGA-66-2785-01 7 73097249 73097249 G C DNAJC30 Missense_Mutation p.Q169E 0.14 deleterious(0.01) benign(0.326) TCGA-66-2785-01 7 74167503 74167503 A G GTF2I Missense_Mutation p.K879E 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-66-2785-01 7 7546791 7546791 C T COL28A1 Missense_Mutation p.G310E 0.15 deleterious(0) probably_damaging(1) TCGA-66-2785-01 7 77423415 77423415 G C TMEM60 Silent p.L92L 0.11 TCGA-66-2785-01 7 77423646 77423646 G C TMEM60 Missense_Mutation p.F15L 0.04 tolerated(0.46) probably_damaging(0.95) TCGA-66-2785-01 7 78636448 78636448 G A MAGI2 Nonsense_Mutation p.Q126* 0.09 TCGA-66-2785-01 7 80378223 80378223 C A SEMA3C Missense_Mutation p.R611S 0.24 tolerated(0.13) probably_damaging(0.996) TCGA-66-2785-01 7 80378224 80378224 C A SEMA3C Missense_Mutation p.R611M 0.23 deleterious(0) probably_damaging(0.999) TCGA-66-2785-01 7 86394595 86394595 T A GRM3 Missense_Mutation p.F45Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-66-2785-01 7 87035754 87035754 G C ABCB4 Silent p.L1119L 0.05 TCGA-66-2785-01 7 87135326 87135326 G A ABCB1 Nonsense_Mutation p.Q1175* 0.10 TCGA-66-2785-01 7 87178835 87178835 C T ABCB1 Splice_Site p.X519_splice 0.11 TCGA-66-2785-01 7 87778317 87778317 G C ADAM22 Missense_Mutation p.R504P 0.13 deleterious(0) probably_damaging(1) TCGA-66-2785-01 7 87912107 87912107 C G STEAP4 Missense_Mutation p.R278P 0.09 deleterious(0) probably_damaging(0.993) TCGA-66-2785-01 7 88965543 88965543 A G ZNF804B Missense_Mutation p.T1083A 0.32 tolerated(0.13) benign(0.026) TCGA-66-2785-01 7 88965729 88965729 C T ZNF804B Nonsense_Mutation p.Q1145* 0.12 TCGA-66-2785-01 7 92120593 92120593 G C PEX1 Missense_Mutation p.S1144C 0.11 deleterious(0) benign(0.043) TCGA-66-2785-01 7 92760988 92760988 G A SAMD9L Silent p.L1433L 0.25 TCGA-66-2785-01 7 92760989 92760989 G T SAMD9L Silent p.L1432L 0.24 TCGA-66-2785-01 7 92761651 92761651 G A SAMD9L Nonsense_Mutation p.Q1212* 0.28 TCGA-66-2785-01 7 92762173 92762173 G C SAMD9L Missense_Mutation p.L1038V 0.25 deleterious(0) possibly_damaging(0.73) TCGA-66-2785-01 7 93055567 93055567 G C CALCR 3'UTR 0.12 TCGA-66-2785-01 7 98508016 98508016 G A TRRAP Missense_Mutation p.G563D 0.14 probably_damaging(0.921) TCGA-66-2785-01 7 99022723 99022723 T C ATP5J2-PTCD1 Missense_Mutation p.M527V 0.17 deleterious(0) probably_damaging(0.973) TCGA-66-2785-01 7 99091386 99091386 G C ZNF394 Silent p.L484L 0.04 TCGA-66-2785-01 7 99306722 99306722 G C CYP3A7 Missense_Mutation p.P397A 0.12 deleterious(0) probably_damaging(0.986) TCGA-66-2785-01 7 99445849 99445849 G C CYP3A43 Missense_Mutation p.E165Q 0.08 tolerated(0.11) benign(0.08) TCGA-66-2785-01 8 100568706 100568706 G T VPS13B Missense_Mutation p.D1617Y 0.16 deleterious(0.05) probably_damaging(0.99) TCGA-66-2785-01 8 100865863 100865863 G C VPS13B Missense_Mutation p.E3441Q 0.16 tolerated(1) benign(0) TCGA-66-2785-01 8 106431476 106431476 G T ZFPM2 Nonsense_Mutation p.E49* 0.16 TCGA-66-2785-01 8 110413772 110413772 G T PKHD1L1 Missense_Mutation p.S443I 0.27 tolerated(0.39) possibly_damaging(0.614) TCGA-66-2785-01 8 113314138 113314138 G C CSMD3 Missense_Mutation p.T2775S 0.19 tolerated(0.33) benign(0.175) TCGA-66-2785-01 8 113668386 113668386 C T CSMD3 Missense_Mutation p.E1001K 0.12 deleterious(0) probably_damaging(0.998) TCGA-66-2785-01 8 120594819 120594819 G C ENPP2 Missense_Mutation p.P575A 0.11 deleterious(0.02) possibly_damaging(0.879) TCGA-66-2785-01 8 124206350 124206350 C T FAM83A Silent p.I245I 0.09 TCGA-66-2785-01 8 124253535 124253535 C G C8orf76 Missense_Mutation p.E18Q 0.12 deleterious(0.05) probably_damaging(0.999) TCGA-66-2785-01 8 124349909 124349909 C G ATAD2 Missense_Mutation p.D1003H 0.07 deleterious(0) probably_damaging(0.999) TCGA-66-2785-01 8 124707798 124707798 C G ANXA13 Missense_Mutation p.D180H 0.10 deleterious(0.01) probably_damaging(0.985) TCGA-66-2785-01 8 125551349 125551349 C T TATDN1 5'Flank 0.19 TCGA-66-2785-01 8 12583331 12583331 G A LONRF1 Nonsense_Mutation p.Q690* 0.19 TCGA-66-2785-01 8 128752800 128752800 C G MYC Missense_Mutation p.Q321E 0.10 deleterious(0) probably_damaging(0.989) TCGA-66-2785-01 8 131070262 131070262 C - ASAP1 Frame_Shift_Del p.E1085Sfs*9 0.20 TCGA-66-2785-01 8 133806669 133806669 A G PHF20L1 Missense_Mutation p.I33V 0.09 deleterious(0) probably_damaging(0.982) TCGA-66-2785-01 8 136619262 136619262 A G KHDRBS3 Missense_Mutation p.Y291C 0.11 deleterious(0) benign(0.018) TCGA-66-2785-01 8 139601674 139601674 C A COL22A1 Missense_Mutation p.G1568V 0.18 unknown(0) TCGA-66-2785-01 8 141745438 141745438 G A PTK2 Missense_Mutation p.P648S 0.21 deleterious(0) probably_damaging(0.933) TCGA-66-2785-01 8 143823764 143823764 C T SLURP1 Missense_Mutation p.A14T 0.22 tolerated(0.08) possibly_damaging(0.739) TCGA-66-2785-01 8 143960579 143960579 C A CYP11B1 Missense_Mutation p.M88I 0.19 tolerated(0.51) benign(0.002) TCGA-66-2785-01 8 143996191 143996191 G T CYP11B2 Missense_Mutation p.S243R 0.13 tolerated(0.52) benign(0.049) TCGA-66-2785-01 8 144776412 144776412 C G ZNF707 Silent p.L276L 0.45 TCGA-66-2785-01 8 144992859 144992859 G C PLEC Silent p.L3847L 0.09 TCGA-66-2785-01 8 144998187 144998187 C T PLEC Silent p.A2107A 0.18 TCGA-66-2785-01 8 145138624 145138624 C G GPAA1 Missense_Mutation p.S125W 0.13 deleterious(0.01) possibly_damaging(0.851) TCGA-66-2785-01 8 145999641 145999641 G C ZNF34 Missense_Mutation p.I231M 0.10 tolerated(0.19) benign(0.002) TCGA-66-2785-01 8 15531304 15531304 G A TUSC3 Missense_Mutation p.G253R 0.18 deleterious(0.03) possibly_damaging(0.905) TCGA-66-2785-01 8 18662066 18662066 C G PSD3 Missense_Mutation p.D626H 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-66-2785-01 8 22006032 22006032 G C LGI3 Missense_Mutation p.R430G 0.25 deleterious(0.01) benign(0.259) TCGA-66-2785-01 8 22105711 22105711 C G POLR3D Missense_Mutation p.H136D 0.16 tolerated(0.12) benign(0.446) TCGA-66-2785-01 8 22272336 22272336 C G SLC39A14 Missense_Mutation p.S224C 0.07 deleterious(0) probably_damaging(0.997) TCGA-66-2785-01 8 25899692 25899692 G A EBF2 Silent p.F69F 0.23 TCGA-66-2785-01 8 33246663 33246663 C G FUT10 Missense_Mutation p.D344H 0.22 deleterious(0.03) probably_damaging(0.967) TCGA-66-2785-01 8 38187168 38187168 C G WHSC1L1 Missense_Mutation p.E437Q 0.09 tolerated(0.44) benign(0.224) TCGA-66-2785-01 8 41591515 41591515 C G ANK1 Missense_Mutation p.E101Q 0.05 deleterious(0.03) possibly_damaging(0.767) TCGA-66-2785-01 8 41834549 41834549 G C KAT6A Nonsense_Mutation p.S447* 0.14 TCGA-66-2785-01 8 41834802 41834802 C A KAT6A Missense_Mutation p.G363C 0.20 probably_damaging(0.991) TCGA-66-2785-01 8 41838388 41838388 G C KAT6A Missense_Mutation p.P295A 0.19 probably_damaging(0.998) TCGA-66-2785-01 8 49832466 49832466 C T SNAI2 Missense_Mutation p.R205K 0.17 deleterious(0) probably_damaging(1) TCGA-66-2785-01 8 55541287 55541287 C A RP1 Silent p.G1615G 0.17 TCGA-66-2785-01 8 56663694 56663694 C A TMEM68 Silent p.V172V 0.11 TCGA-66-2785-01 8 57025860 57025860 C G MOS Missense_Mutation p.D228H 0.21 tolerated(0.08) probably_damaging(0.971) TCGA-66-2785-01 8 57025872 57025872 C G MOS Missense_Mutation p.E224Q 0.13 tolerated(1) benign(0.034) TCGA-66-2785-01 8 57213976 57213976 C G SDR16C5 3'UTR 0.06 TCGA-66-2785-01 8 6302244 6302244 C T MCPH1 Missense_Mutation p.P334L 0.20 deleterious(0.04) probably_damaging(0.998) TCGA-66-2785-01 8 68151048 68151048 C G ARFGEF1 Missense_Mutation p.Q1020H 0.19 tolerated(0.14) possibly_damaging(0.894) TCGA-66-2785-01 8 70591617 70591617 G T SLCO5A1 Missense_Mutation p.L674I 0.18 tolerated(0.06) possibly_damaging(0.646) TCGA-66-2785-01 8 70744042 70744042 T C SLCO5A1 Silent p.L289L 0.19 TCGA-66-2785-01 8 72754891 72754891 C A MSC 3'UTR 0.14 TCGA-66-2785-01 8 73979610 73979610 G C SBSPON Missense_Mutation p.S254C 0.33 deleterious(0) probably_damaging(0.975) TCGA-66-2785-01 8 87616376 87616376 C G CNGB3 Missense_Mutation p.D576H 0.21 deleterious(0) possibly_damaging(0.876) TCGA-66-2785-01 8 87656908 87656908 A T CNGB3 Missense_Mutation p.S333T 0.17 tolerated(0.56) benign(0.206) TCGA-66-2785-01 8 92982954 92982954 C T RUNX1T1 Missense_Mutation p.A502T 0.34 tolerated(0.1) benign(0.195) TCGA-66-2785-01 8 93074942 93074942 C T RUNX1T1 Intron 0.18 TCGA-66-2785-01 8 95503956 95503956 C G KIAA1429 Missense_Mutation p.E1664Q 0.14 tolerated(0.21) possibly_damaging(0.893) TCGA-66-2785-01 8 96275974 96275974 C G C8orf37 Missense_Mutation p.D62H 0.14 deleterious(0) possibly_damaging(0.864) TCGA-66-2785-01 8 97172861 97172861 C T GDF6 Silent p.L20L 0.36 TCGA-66-2785-01 8 97316271 97316271 C T PTDSS1 Silent p.D252D 0.13 TCGA-66-2785-01 8 98290039 98290039 G T TSPYL5 Missense_Mutation p.R12S 0.24 tolerated(0.22) unknown(0) TCGA-66-2785-01 8 99129394 99129394 T A HRSP12 5'UTR 0.52 TCGA-66-2785-01 9 104238938 104238938 A G TMEM246 Missense_Mutation p.V146A 0.21 deleterious(0) probably_damaging(0.992) TCGA-66-2785-01 9 107560723 107560723 G C ABCA1 Silent p.L1700L 0.31 TCGA-66-2785-01 9 113265483 113265483 G A SVEP1 Missense_Mutation p.H440Y 0.41 benign(0.217) TCGA-66-2785-01 9 115818839 115818839 C T ZFP37 Missense_Mutation p.A44T 0.37 tolerated(0.19) possibly_damaging(0.77) TCGA-66-2785-01 9 117552716 117552716 G A TNFSF15 3'UTR 0.19 TCGA-66-2785-01 9 125782649 125782649 G A RABGAP1 Missense_Mutation p.E569K 0.15 deleterious(0) probably_damaging(0.987) TCGA-66-2785-01 9 130911799 130911799 G C LCN2 5'UTR 0.05 TCGA-66-2785-01 9 130984795 130984795 C G DNM1 Missense_Mutation p.Q350E 0.14 tolerated(0.39) benign(0.045) TCGA-66-2785-01 9 131568141 131568141 G A TBC1D13 Missense_Mutation p.E308K 0.16 tolerated(0.38) benign(0.034) TCGA-66-2785-01 9 134348896 134348896 A G PRRC2B Silent p.G703G 0.19 TCGA-66-2785-01 9 135702386 135702386 G C AK8 Silent p.L204L 0.16 TCGA-66-2785-01 9 135804213 135804213 G C TSC1 Missense_Mutation p.S16C 0.17 deleterious(0) probably_damaging(1) TCGA-66-2785-01 9 136917502 136917502 T A BRD3 Missense_Mutation p.N93Y 0.19 deleterious(0) benign(0.096) TCGA-66-2785-01 9 138376850 138376850 C - PPP1R26 Frame_Shift_Del p.A166Qfs*51 0.57 TCGA-66-2785-01 9 138440538 138440538 G A OBP2A Intron 0.35 TCGA-66-2785-01 9 139272375 139272375 G A SNAPC4 Missense_Mutation p.P1302S 0.26 tolerated(0.09) benign(0.037) TCGA-66-2785-01 9 139734662 139734662 G C RABL6 Missense_Mutation p.E664Q 0.21 tolerated_low_confidence(0.11) unknown(0) TCGA-66-2785-01 9 140115307 140115307 G C RNF208 Missense_Mutation p.Q120E 0.44 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-66-2785-01 9 140140245 140140245 C T FAM166A Silent p.T39T 0.24 TCGA-66-2785-01 9 140449841 140449841 C T DPH7 Missense_Mutation p.M403I 0.21 tolerated(0.19) benign(0.002) TCGA-66-2785-01 9 35853186 35853186 G C TMEM8B Missense_Mutation p.D339H 0.14 deleterious(0) probably_damaging(1) TCGA-66-2785-01 9 35957495 35957495 C G OR2S2 Missense_Mutation p.E201Q 0.13 tolerated(0.58) benign(0.102) TCGA-66-2785-01 9 35957889 35957889 G C OR2S2 Missense_Mutation p.F69L 0.34 tolerated(0.09) benign(0.053) TCGA-66-2785-01 9 73398874 73398874 C T TRPM3 Intron 0.82 TCGA-66-2785-01 9 86584254 86584254 C T HNRNPK 3'UTR 0.14 TCGA-66-2785-01 9 90312079 90312079 C G DAPK1 Silent p.L857L 0.16 TCGA-66-2785-01 9 99694157 99694157 C G NUTM2G Missense_Mutation p.S57C 0.11 deleterious(0.02) probably_damaging(0.968) TCGA-66-2785-01 X 102338427 102338427 G A NXF3 Missense_Mutation p.H147Y 0.06 deleterious(0) probably_damaging(0.997) TCGA-66-2785-01 X 106228351 106228351 G A MORC4 Missense_Mutation p.R217C 0.26 deleterious(0.01) probably_damaging(0.995) TCGA-66-2785-01 X 106466060 106466060 A G PIH1D3 Missense_Mutation p.S140G 0.29 deleterious(0) benign(0.045) TCGA-66-2785-01 X 107403859 107403859 G A COL4A6 Silent p.F1454F 0.05 TCGA-66-2785-01 X 110925357 110925357 C T ALG13 Intron 0.10 TCGA-66-2785-01 X 111195371 111195371 C G TRPC5 Missense_Mutation p.S93T 0.46 deleterious(0.04) benign(0.232) TCGA-66-2785-01 X 118143099 118143099 C G LONRF3 Nonsense_Mutation p.S514* 0.22 TCGA-66-2785-01 X 124029949 124029949 G C TENM1 Missense_Mutation p.A120G 0.24 tolerated_low_confidence(0.16) benign(0.29) TCGA-66-2785-01 X 128692883 128692883 C G OCRL Silent p.L209L 0.08 TCGA-66-2785-01 X 129843296 129843296 G C ENOX2 5'UTR 0.26 TCGA-66-2785-01 X 130217695 130217695 C G ARHGAP36 Intron 0.22 TCGA-66-2785-01 X 137821496 137821496 G A FGF13 Intron 0.54 TCGA-66-2785-01 X 141291553 141291553 C A MAGEC2 Missense_Mutation p.G74V 0.66 deleterious(0.04) benign(0.02) TCGA-66-2785-01 X 153128079 153128079 C A L1CAM 3'UTR 0.56 TCGA-66-2785-01 X 153416362 153416362 C G OPN1LW Missense_Mutation p.S116C 0.23 tolerated(0.18) benign(0.005) TCGA-66-2785-01 X 153416372 153416372 C G OPN1LW Missense_Mutation p.F119L 0.20 deleterious(0.03) benign(0.107) TCGA-66-2785-01 X 154159454 154159454 C G F8 Missense_Mutation p.E871Q 0.31 tolerated(0.13) benign(0.032) TCGA-66-2785-01 X 154294059 154294059 C T MTCP1 Silent p.T37T 0.58 TCGA-66-2785-01 X 19369418 19369418 T C PDHA1 Missense_Mutation p.L142P 0.24 deleterious(0) probably_damaging(0.987) TCGA-66-2785-01 X 22292313 22292313 C A ZNF645 Missense_Mutation p.T402K 0.29 deleterious(0.01) unknown(0) TCGA-66-2785-01 X 24078262 24078262 C T EIF2S3 Silent p.N147N 0.17 TCGA-66-2785-01 X 3021944 3021944 G A ARSF Missense_Mutation p.G415E 0.55 deleterious(0.03) probably_damaging(0.98) TCGA-66-2785-01 X 31496327 31496327 C T DMD Missense_Mutation p.E2945K 0.55 possibly_damaging(0.486) TCGA-66-2785-01 X 32305648 32305648 T C DMD Silent p.Q2096Q 0.45 TCGA-66-2785-01 X 37027712 37027712 G T FAM47C Missense_Mutation p.R410L 0.55 tolerated(0.06) probably_damaging(0.968) TCGA-66-2785-01 X 38163977 38163977 T C RPGR Missense_Mutation p.E282G 0.56 possibly_damaging(0.826) TCGA-66-2785-01 X 46332325 46332325 C T KRBOX4 Silent p.L132L 0.29 TCGA-66-2785-01 X 48688086 48688086 C T ERAS Missense_Mutation p.R185W 0.63 deleterious(0) benign(0.383) TCGA-66-2785-01 X 48858606 48858606 C T GRIPAP1 Missense_Mutation p.R12Q 0.19 probably_damaging(0.999) TCGA-66-2785-01 X 49237443 49237443 C G GAGE2B Missense_Mutation p.Q50E 0.04 possibly_damaging(0.76) TCGA-66-2785-01 X 50052096 50052096 C T CCNB3 Silent p.I309I 0.22 TCGA-66-2785-01 X 50054316 50054316 G C CCNB3 Missense_Mutation p.L1049F 0.23 deleterious(0.04) possibly_damaging(0.587) TCGA-66-2785-01 X 54275803 54275803 C A WNK3 Missense_Mutation p.G993V 0.43 tolerated(0.08) benign(0.013) TCGA-66-2785-01 X 54955416 54955416 T C TRO Silent p.G753G 0.28 TCGA-66-2785-01 X 63615252 63615252 T C MTMR8 5'UTR 0.19 TCGA-66-2785-01 X 70601652 70601652 G A TAF1 Missense_Mutation p.E494K 0.03 tolerated(0.08) probably_damaging(0.954) TCGA-66-2785-01 X 73071858 73071858 C T XIST RNA 0.24 TCGA-66-2785-01 X 74284974 74284974 G A ABCB7 Missense_Mutation p.H589Y 0.16 deleterious(0.01) probably_damaging(0.993) TCGA-66-2785-01 X 75650539 75650539 C T MAGEE1 Missense_Mutation p.S739L 0.25 deleterious(0.02) probably_damaging(0.987) TCGA-66-2785-01 X 76890178 76890178 C T ATRX Nonsense_Mutation p.W1572* 0.23 TCGA-66-2785-01 X 77301851 77301851 G C ATP7A Missense_Mutation p.K1429N 0.51 tolerated(0.43) benign(0.008) TCGA-66-2785-01 X 78010547 78010547 C G LPAR4 Missense_Mutation p.L61V 0.27 tolerated(0.08) possibly_damaging(0.585) TCGA-66-2785-01 X 79279607 79279607 A T TBX22 Silent p.P134P 0.41 TCGA-66-2786-01 10 120802129 120802129 G C EIF3A Missense_Mutation p.P968R 0.03 tolerated(0.09) probably_damaging(0.984) TCGA-66-2786-01 10 128191236 128191236 A C C10orf90 Intron 0.11 TCGA-66-2786-01 10 129903814 129903814 T C MKI67 Missense_Mutation p.K2097R 0.30 deleterious(0.04) possibly_damaging(0.604) TCGA-66-2786-01 10 44866810 44866810 A G CXCL12 3'UTR 0.38 TCGA-66-2786-01 10 50531322 50531322 C T C10orf71 Silent p.T244T 0.45 TCGA-66-2786-01 10 51582221 51582221 A T NCOA4 Silent p.A189A 0.28 TCGA-66-2786-01 10 54032153 54032153 C A PRKG1 Missense_Mutation p.L439M 0.12 tolerated(0.1) possibly_damaging(0.775) TCGA-66-2786-01 10 97759956 97759956 G C CC2D2B 5'UTR 0.32 TCGA-66-2786-01 11 111558844 111558844 G C SIK2 Missense_Mutation p.E146Q 0.38 deleterious(0) probably_damaging(0.998) TCGA-66-2786-01 11 113856854 113856854 T C HTR3A Missense_Mutation p.F227S 0.03 deleterious(0.04) possibly_damaging(0.868) TCGA-66-2786-01 11 116701317 116701317 C G APOC3 Missense_Mutation p.L7V 0.13 deleterious(0.02) unknown(0) TCGA-66-2786-01 11 118376731 118376731 C G KMT2A Missense_Mutation p.T3375S 0.08 benign(0.001) TCGA-66-2786-01 11 121028662 121028662 G A TECTA Missense_Mutation p.R1473H 0.16 deleterious(0) possibly_damaging(0.885) TCGA-66-2786-01 11 20940796 20940796 A T NELL1 Splice_Site p.X226_splice 0.23 TCGA-66-2786-01 11 22242675 22242675 C A ANO5 Silent p.I71I 0.23 TCGA-66-2786-01 11 22291937 22291937 G T ANO5 Missense_Mutation p.D660Y 0.28 deleterious(0) probably_damaging(1) TCGA-66-2786-01 11 47602541 47602541 G T NDUFS3 Intron 0.24 TCGA-66-2786-01 11 51515930 51515930 G A OR4C46 Missense_Mutation p.V217M 0.16 tolerated_low_confidence(0.09) benign(0.142) TCGA-66-2786-01 11 57467477 57467477 G A ZDHHC5 Missense_Mutation p.G708S 0.24 deleterious(0) probably_damaging(0.986) TCGA-66-2786-01 11 62761028 62761028 G T SLC22A8 Missense_Mutation p.T466K 0.06 tolerated(0.08) probably_damaging(0.972) TCGA-66-2786-01 11 67219032 67219032 G A GPR152 Silent p.A388A 0.11 TCGA-66-2786-01 11 76256898 76256898 C T C11orf30 Missense_Mutation p.R1111C 0.10 deleterious_low_confidence(0) possibly_damaging(0.483) TCGA-66-2786-01 11 7670765 7670765 C T PPFIBP2 Silent p.N667N 0.27 TCGA-66-2786-01 11 89939369 89939369 C A CHORDC1 Splice_Site p.X188_splice 0.27 TCGA-66-2786-01 12 10215734 10215734 T A CLEC9A Missense_Mutation p.W134R 0.09 deleterious(0) probably_damaging(1) TCGA-66-2786-01 12 104077060 104077060 C A STAB2 Silent p.T961T 0.22 TCGA-66-2786-01 12 108642091 108642091 G C WSCD2 Missense_Mutation p.G557R 0.28 deleterious(0.04) probably_damaging(1) TCGA-66-2786-01 12 11461259 11461259 G T PRB4 Missense_Mutation p.P220T 0.28 tolerated_low_confidence(0.17) unknown(0) TCGA-66-2786-01 12 11461447 11461447 G A PRB4 Missense_Mutation p.P157L 0.24 deleterious_low_confidence(0.01) unknown(0) TCGA-66-2786-01 12 126128791 126128791 T C TMEM132B Missense_Mutation p.I531T 0.24 deleterious(0) possibly_damaging(0.628) TCGA-66-2786-01 12 130840130 130840130 G A PIWIL1 Nonsense_Mutation p.W441* 0.08 TCGA-66-2786-01 12 133393317 133393317 G A GOLGA3 Missense_Mutation p.T72M 0.33 tolerated_low_confidence(0.22) benign(0.011) TCGA-66-2786-01 12 20893186 20893186 A G SLCO1C1 Silent p.G539G 0.27 TCGA-66-2786-01 12 27143425 27143425 C T TM7SF3 Missense_Mutation p.A276T 0.29 deleterious(0.01) possibly_damaging(0.781) TCGA-66-2786-01 12 31540512 31540512 G A DENND5B 3'UTR 0.33 TCGA-66-2786-01 12 49075195 49075195 T C KANSL2 Missense_Mutation p.N74S 0.25 tolerated(0.35) benign(0.007) TCGA-66-2786-01 12 53298547 53298547 C T KRT8 Silent p.L101L 0.10 TCGA-66-2786-01 12 53431196 53431196 C T EIF4B Missense_Mutation p.A437V 0.20 tolerated(0.75) benign(0.119) TCGA-66-2786-01 12 54379069 54379069 C T HOXC10 Missense_Mutation p.P9L 0.17 tolerated(0.05) benign(0.023) TCGA-66-2786-01 12 56563645 56563645 G C SMARCC2 Silent p.T790T 0.27 TCGA-66-2786-01 12 81111152 81111152 G A MYF5 Missense_Mutation p.E104K 0.07 deleterious(0) benign(0.446) TCGA-66-2786-01 12 81688753 81688753 G A PPFIA2 Missense_Mutation p.A929V 0.41 deleterious(0) possibly_damaging(0.765) TCGA-66-2786-01 12 95905710 95905710 A - METAP2 Frame_Shift_Del p.Q335Hfs*13 0.23 TCGA-66-2786-01 12 99145241 99145241 T A ANKS1B Silent p.L1188L 0.25 TCGA-66-2786-01 13 101753188 101753188 G A NALCN Nonsense_Mutation p.Q1037* 0.05 TCGA-66-2786-01 13 107148093 107148093 T C EFNB2 Intron 0.47 TCGA-66-2786-01 14 106320570 106320570 C T IGHM Missense_Mutation p.V414M 0.46 deleterious(0) probably_damaging(0.974) TCGA-66-2786-01 14 21868389 21868389 C T CHD8 Missense_Mutation p.D1550N 0.33 tolerated(0.08) benign(0.395) TCGA-66-2786-01 14 39772705 39772705 A T CTAGE5 Nonsense_Mutation p.K319* 0.37 TCGA-66-2786-01 14 69704332 69704332 A T EXD2 Missense_Mutation p.I445F 0.40 tolerated(0.19) benign(0.381) TCGA-66-2786-01 15 34064318 34064318 T C RYR3 Missense_Mutation p.F3005S 0.15 possibly_damaging(0.789) TCGA-66-2786-01 15 41853468 41853468 T C TYRO3 Missense_Mutation p.Y90H 0.12 tolerated(0.52) possibly_damaging(0.774) TCGA-66-2786-01 15 43822398 43822398 C T MAP1A Silent p.F2796F 0.07 TCGA-66-2786-01 15 49493405 49493405 C A GALK2 Missense_Mutation p.P34T 0.24 deleterious(0) probably_damaging(1) TCGA-66-2786-01 15 53081523 53081523 G A ONECUT1 Silent p.L187L 0.26 TCGA-66-2786-01 15 54007474 54007474 A T WDR72 Missense_Mutation p.L144M 0.16 deleterious(0) probably_damaging(1) TCGA-66-2786-01 15 56144621 56144621 C T NEDD4 Splice_Site p.X729_splice 0.23 TCGA-66-2786-01 15 59499577 59499577 T A LDHAL6B Silent p.G146G 0.29 TCGA-66-2786-01 15 62283258 62283261 TATC - VPS13C Frame_Shift_Del p.D506Nfs*15 0.27 TCGA-66-2786-01 15 63353941 63353941 A G TPM1 Intron 0.07 TCGA-66-2786-01 15 78922133 78922133 G A CHRNB4 Missense_Mutation p.R172C 0.26 deleterious(0.01) probably_damaging(1) TCGA-66-2786-01 15 86838602 86838602 G T AGBL1 Missense_Mutation p.M733I 0.28 deleterious(0.01) benign(0.345) TCGA-66-2786-01 15 88679149 88679149 A C NTRK3 Missense_Mutation p.S296R 0.31 deleterious(0.02) probably_damaging(0.964) TCGA-66-2786-01 15 90145164 90145164 G A TICRR Missense_Mutation p.D842N 0.35 deleterious(0.02) benign(0.222) TCGA-66-2786-01 16 26147055 26147055 T C HS3ST4 Missense_Mutation p.V286A 0.29 deleterious(0) probably_damaging(0.999) TCGA-66-2786-01 16 32890839 32890839 G A SLC6A10P RNA 0.11 TCGA-66-2786-01 16 48172191 48172191 G C ABCC12 Missense_Mutation p.I309M 0.33 deleterious(0.02) possibly_damaging(0.863) TCGA-66-2786-01 16 603040 603040 A T CAPN15 Missense_Mutation p.R1028W 0.21 deleterious(0) probably_damaging(1) TCGA-66-2786-01 16 67327808 67327808 T A KCTD19 Silent p.T619T 0.25 TCGA-66-2786-01 16 67662443 67662443 A G CTCF Silent p.T563T 0.29 TCGA-66-2786-01 16 68112719 68112719 G C DUS2 Missense_Mutation p.E438Q 0.27 deleterious(0.05) benign(0.147) TCGA-66-2786-01 16 71319141 71319141 G C CMTR2 Missense_Mutation p.T228S 0.07 tolerated(0.5) benign(0.145) TCGA-66-2786-01 16 85694958 85694958 G A GSE1 Missense_Mutation p.R616H 0.23 deleterious(0.02) probably_damaging(0.963) TCGA-66-2786-01 17 18219655 18219655 G C SMCR8 Missense_Mutation p.K184N 0.06 deleterious(0) probably_damaging(1) TCGA-66-2786-01 17 3717728 3717728 A G C17orf85 Silent p.F505F 0.40 TCGA-66-2786-01 17 40767067 40767067 A T TUBG1 3'UTR 0.41 TCGA-66-2786-01 17 64637581 64637581 G A PRKCA Missense_Mutation p.D133N 0.05 tolerated(0.05) possibly_damaging(0.456) TCGA-66-2786-01 17 7411633 7411633 A G POLR2A Missense_Mutation p.M1102V 0.40 probably_damaging(0.994) TCGA-66-2786-01 17 7578458 7578458 G C TP53 Missense_Mutation p.R158G 0.37 deleterious(0) probably_damaging(0.994) TCGA-66-2786-01 17 8046002 8046002 G C PER1 Missense_Mutation p.S1075C 0.41 deleterious(0.01) probably_damaging(0.993) TCGA-66-2786-01 17 8051538 8051538 C G PER1 Missense_Mutation p.R363P 0.32 deleterious(0.02) probably_damaging(0.97) TCGA-66-2786-01 18 19997382 19997382 T G CTAGE1 Missense_Mutation p.E131D 0.03 tolerated(0.05) possibly_damaging(0.782) TCGA-66-2786-01 18 29800198 29800198 A G MEP1B Missense_Mutation p.H699R 0.30 tolerated_low_confidence(0.28) benign(0.001) TCGA-66-2786-01 18 54398814 54398814 G C WDR7 Missense_Mutation p.E659Q 0.07 tolerated(0.47) benign(0.216) TCGA-66-2786-01 18 66367644 66367644 A G TMX3 Silent p.S130S 0.09 TCGA-66-2786-01 18 70417473 70417473 C A NETO1 Missense_Mutation p.L455F 0.22 tolerated_low_confidence(0.71) possibly_damaging(0.823) TCGA-66-2786-01 18 72345581 72345581 T G ZNF407 Missense_Mutation p.I869S 0.24 deleterious(0) probably_damaging(0.996) TCGA-66-2786-01 18 74153304 74153308 GCTGG - ZNF516 Frame_Shift_Del p.P568Qfs*10 0.36 TCGA-66-2786-01 19 12881986 12881986 C A HOOK2 Nonsense_Mutation p.E250* 0.48 TCGA-66-2786-01 19 19231853 19231853 T A TMEM161A Missense_Mutation p.E346V 0.40 tolerated(0.05) probably_damaging(0.991) TCGA-66-2786-01 19 21605734 21605734 T A ZNF493 Silent p.A91A 0.33 TCGA-66-2786-01 19 37903707 37903707 C T ZNF569 Missense_Mutation p.S618N 0.28 tolerated(0.26) probably_damaging(0.977) TCGA-66-2786-01 19 38102891 38102891 A G ZNF540 Missense_Mutation p.H237R 0.05 deleterious(0) probably_damaging(0.996) TCGA-66-2786-01 19 4054023 4054023 G T ZBTB7A Missense_Mutation p.T403N 0.16 deleterious(0.01) possibly_damaging(0.673) TCGA-66-2786-01 19 42083652 42083652 G A CEACAM21 Silent p.V55V 0.30 TCGA-66-2786-01 19 42480657 42480657 C T ATP1A3 Missense_Mutation p.D682N 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-66-2786-01 19 46498682 46498682 G A CCDC61 5'Flank 0.18 TCGA-66-2786-01 19 47193887 47193887 G T PRKD2 Missense_Mutation p.S593R 0.22 tolerated(0.17) possibly_damaging(0.697) TCGA-66-2786-01 19 51647820 51647820 C A SIGLEC7 Silent p.T197T 0.13 TCGA-66-2786-01 19 52222524 52222524 C G HAS1 Missense_Mutation p.G213R 0.12 deleterious(0.03) probably_damaging(0.951) TCGA-66-2786-01 19 53885975 53885975 A G ZNF525 3'UTR 0.20 TCGA-66-2786-01 19 5604920 5604923 CGTT - SAFB2 Frame_Shift_Del p.N441Pfs*36 0.38 TCGA-66-2786-01 19 57328242 57328242 T A PEG3 Missense_Mutation p.H523L 0.08 deleterious(0) probably_damaging(0.983) TCGA-66-2786-01 19 58290764 58290764 C T ZNF586 Missense_Mutation p.S270L 0.22 tolerated(0.67) benign(0.363) TCGA-66-2786-01 1 111992041 111992041 G A ATP5F1 5'UTR 0.29 TCGA-66-2786-01 1 118491082 118491082 G T WDR3 Missense_Mutation p.D493Y 0.12 deleterious(0.02) possibly_damaging(0.701) TCGA-66-2786-01 1 13001199 13001199 C T PRAMEF6 Missense_Mutation p.E162K 0.10 tolerated(0.26) possibly_damaging(0.447) TCGA-66-2786-01 1 155148067 155148067 G A TRIM46 Missense_Mutation p.R90H 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-66-2786-01 1 159163779 159163779 G C CADM3 Missense_Mutation p.E248Q 0.20 tolerated(0.32) benign(0.438) TCGA-66-2786-01 1 173802512 173802512 A G DARS2 Splice_Site p.X165_splice 0.25 TCGA-66-2786-01 1 175046622 175046622 C T TNN Missense_Mutation p.S23L 0.19 tolerated(0.13) probably_damaging(0.997) TCGA-66-2786-01 1 186072603 186072603 G A HMCN1 Splice_Site p.X3525_splice 0.24 TCGA-66-2786-01 1 22200485 22200485 G C HSPG2 Missense_Mutation p.L1226V 0.15 probably_damaging(0.981) TCGA-66-2786-01 1 23419764 23419764 T G LUZP1 Missense_Mutation p.N331H 0.12 deleterious(0) probably_damaging(0.959) TCGA-66-2786-01 1 237494252 237494252 G T RYR2 Missense_Mutation p.M81I 0.27 possibly_damaging(0.459) TCGA-66-2786-01 1 237819249 237819249 A G RYR2 Silent p.E2698E 0.28 TCGA-66-2786-01 1 240072006 240072006 A G CHRM3 Missense_Mutation p.S419G 0.15 tolerated(0.27) benign(0) TCGA-66-2786-01 1 248487030 248487030 C T OR2M7 Missense_Mutation p.V281I 0.29 tolerated(0.17) benign(0.003) TCGA-66-2786-01 1 40929295 40929295 C A ZFP69B 3'UTR 0.28 TCGA-66-2786-01 1 75204423 75204423 C T TYW3 Missense_Mutation p.P102L 0.27 deleterious(0.02) possibly_damaging(0.739) TCGA-66-2786-01 1 92511107 92511107 T C EPHX4 Missense_Mutation p.L165P 0.08 deleterious(0) probably_damaging(0.995) TCGA-66-2786-01 1 94027879 94027879 C G BCAR3 Missense_Mutation p.E799D 0.23 tolerated(0.16) benign(0.002) TCGA-66-2786-01 1 99772302 99772302 G C LPPR4 Silent p.L676L 0.24 TCGA-66-2786-01 20 21143633 21143633 G A RP4-777D9.2 Intron 0.27 TCGA-66-2786-01 20 21494122 21494122 C T NKX2-2 Silent p.K62K 0.32 TCGA-66-2786-01 20 30070090 30070090 G A REM1 Missense_Mutation p.D142N 0.31 tolerated(0.1) benign(0.043) TCGA-66-2786-01 20 3674246 3674246 T C SIGLEC1 Missense_Mutation p.Y1119C 0.23 deleterious(0) probably_damaging(1) TCGA-66-2786-01 20 37169683 37169683 G C RALGAPB Splice_Site p.X855_splice 0.23 TCGA-66-2786-01 20 40045305 40045305 G A CHD6 Nonsense_Mutation p.R2137* 0.30 TCGA-66-2786-01 20 40727093 40727093 C A PTPRT Missense_Mutation p.V1272L 0.24 tolerated(0.17) benign(0.109) TCGA-66-2786-01 20 5283025 5283025 C T PROKR2 Silent p.K272K 0.28 TCGA-66-2786-01 20 55100911 55100911 A T FAM209A Nonsense_Mutation p.K101* 0.24 TCGA-66-2786-01 22 17443526 17443526 T C GAB4 3'UTR 0.37 TCGA-66-2786-01 22 24615949 24615949 C A GGT5 Missense_Mutation p.A585S 0.26 tolerated(0.33) benign(0.029) TCGA-66-2786-01 22 40139799 40139799 A G ENTHD1 Missense_Mutation p.I570T 0.22 deleterious(0) possibly_damaging(0.776) TCGA-66-2786-01 2 105889313 105889313 G A TGFBRAP1 Silent p.L657L 0.28 TCGA-66-2786-01 2 11802132 11802132 G A NTSR2 Missense_Mutation p.R287C 0.28 tolerated(0.11) benign(0.402) TCGA-66-2786-01 2 122007221 122007221 G C TFCP2L1 Missense_Mutation p.Q73E 0.13 deleterious(0.04) benign(0.192) TCGA-66-2786-01 2 135920135 135920135 A T RAB3GAP1 Missense_Mutation p.Y767F 0.07 tolerated(0.34) benign(0.09) TCGA-66-2786-01 2 152427027 152427027 C A NEB Missense_Mutation p.R5701M 0.21 probably_damaging(1) TCGA-66-2786-01 2 159537068 159537068 C G PKP4 Missense_Mutation p.S1153C 0.09 deleterious(0.01) possibly_damaging(0.469) TCGA-66-2786-01 2 165984340 165984340 C G SCN3A Missense_Mutation p.R1065T 0.09 tolerated(0.05) benign(0.07) TCGA-66-2786-01 2 170103423 170103423 G A LRP2 Silent p.F994F 0.29 TCGA-66-2786-01 2 179411914 179411914 C G TTN Missense_Mutation p.E31446D 0.30 TCGA-66-2786-01 2 179449653 179449653 A G TTN Missense_Mutation p.I21572T 0.24 TCGA-66-2786-01 2 179497054 179497054 C T TTN Missense_Mutation p.D14523N 0.20 TCGA-66-2786-01 2 179605601 179605601 T C TTN Missense_Mutation p.Q4120R 0.28 TCGA-66-2786-01 2 196548476 196548476 C T SLC39A10 Silent p.P354P 0.19 TCGA-66-2786-01 2 211515145 211515145 G T CPS1 Missense_Mutation p.A1161S 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-66-2786-01 2 211542608 211542608 C G CPS1 Intron 0.23 TCGA-66-2786-01 2 211542649 211542649 C T CPS1 Silent p.R1487R 0.24 TCGA-66-2786-01 2 220471540 220471540 C T STK11IP Missense_Mutation p.S376L 0.35 tolerated(0.15) probably_damaging(0.998) TCGA-66-2786-01 2 223773836 223773836 G C ACSL3 Missense_Mutation p.E116Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-66-2786-01 2 230678586 230678586 C G TRIP12 Missense_Mutation p.Q614H 0.22 tolerated(0.07) benign(0.01) TCGA-66-2786-01 2 242432343 242432343 G A FARP2 Splice_Site p.X930_splice 0.10 TCGA-66-2786-01 2 24929797 24929797 C T NCOA1 Silent p.F486F 0.28 TCGA-66-2786-01 2 50765611 50765611 C A NRXN1 Silent p.V681V 0.17 TCGA-66-2786-01 2 66668595 66668595 A C MEIS1 Missense_Mutation p.K161T 0.31 deleterious(0) probably_damaging(0.931) TCGA-66-2786-01 2 7154628 7154628 A T RNF144A Missense_Mutation p.E60V 0.29 tolerated(0.63) benign(0.014) TCGA-66-2786-01 2 79971593 79971593 T G CTNNA2 Silent p.A61A 0.30 TCGA-66-2786-01 2 80782969 80782969 G A CTNNA2 Silent p.G564G 0.05 TCGA-66-2786-01 3 100605081 100605081 T - ABI3BP Frame_Shift_Del p.N190Tfs*2 0.20 TCGA-66-2786-01 3 107492023 107492023 C T BBX Silent p.S485S 0.07 TCGA-66-2786-01 3 111394070 111394070 T C PLCXD2 5'UTR 0.11 TCGA-66-2786-01 3 112546226 112546226 G A CD200R1L Missense_Mutation p.L140F 0.07 deleterious(0) probably_damaging(1) TCGA-66-2786-01 3 122629801 122629801 G A SEMA5B Silent p.H1115H 0.28 TCGA-66-2786-01 3 130289871 130289871 G T COL6A6 Nonsense_Mutation p.E871* 0.17 TCGA-66-2786-01 3 133472451 133472451 G A TF Missense_Mutation p.D77N 0.18 deleterious(0) probably_damaging(1) TCGA-66-2786-01 3 135759780 135759780 A T PPP2R3A Missense_Mutation p.Q781L 0.23 deleterious(0.01) probably_damaging(0.992) TCGA-66-2786-01 3 1363395 1363395 T C CNTN6 Missense_Mutation p.Y275H 0.37 tolerated(0.2) benign(0.012) TCGA-66-2786-01 3 140123518 140123518 G T CLSTN2 Missense_Mutation p.A183S 0.10 deleterious(0.02) probably_damaging(1) TCGA-66-2786-01 3 140123519 140123519 C T CLSTN2 Missense_Mutation p.A183V 0.10 deleterious(0) probably_damaging(1) TCGA-66-2786-01 3 142735709 142735709 A T U2SURP Missense_Mutation p.R154S 0.09 tolerated(0.13) benign(0.031) TCGA-66-2786-01 3 148759977 148759977 C A HLTF Missense_Mutation p.A725S 0.25 tolerated(0.36) benign(0.144) TCGA-66-2786-01 3 164905718 164905718 G C SLITRK3 Silent p.L967L 0.20 TCGA-66-2786-01 3 179085308 179085308 C A MFN1 Missense_Mutation p.R279S 0.23 deleterious(0) possibly_damaging(0.862) TCGA-66-2786-01 3 183887879 183887879 G A DVL3 Silent p.G528G 0.22 TCGA-66-2786-01 3 185316794 185316794 A G SENP2 Missense_Mutation p.N114D 0.20 tolerated(0.16) benign(0.092) TCGA-66-2786-01 3 186450324 186450324 G T KNG1 Missense_Mutation p.C264F 0.23 deleterious(0) probably_damaging(0.993) TCGA-66-2786-01 3 33400471 33400471 C G FBXL2 Missense_Mutation p.F26L 0.30 deleterious(0.01) possibly_damaging(0.595) TCGA-66-2786-01 3 39307160 39307160 C A CX3CR1 Missense_Mutation p.V313F 0.27 deleterious(0.03) benign(0.022) TCGA-66-2786-01 3 47129614 47129614 C A SETD2 Nonsense_Mutation p.E1756* 0.39 TCGA-66-2786-01 3 47382151 47382151 C T KLHL18 Missense_Mutation p.S404L 0.04 deleterious(0.04) possibly_damaging(0.608) TCGA-66-2786-01 3 47455557 47455557 G C SCAP Missense_Mutation p.I1209M 0.37 deleterious(0.02) probably_damaging(0.957) TCGA-66-2786-01 4 122301659 122301659 G C QRFPR Silent p.L48L 0.19 TCGA-66-2786-01 4 126412763 126412763 A G FAT4 Missense_Mutation p.N4929S 0.31 probably_damaging(0.977) TCGA-66-2786-01 4 170038713 170038713 G T SH3RF1 Missense_Mutation p.Q580K 0.36 deleterious(0.01) probably_damaging(0.993) TCGA-66-2786-01 4 39851220 39851220 G - PDS5A Frame_Shift_Del p.H1047Mfs*4 0.30 TCGA-66-2786-01 4 53728716 53728716 C G RASL11B Silent p.P14P 0.20 TCGA-66-2786-01 4 6611581 6611581 C T MAN2B2 Missense_Mutation p.P688L 0.17 deleterious(0) probably_damaging(0.91) TCGA-66-2786-01 4 90170193 90170193 G T GPRIN3 Missense_Mutation p.Q357K 0.47 deleterious(0.04) benign(0.129) TCGA-66-2786-01 5 1242883 1242883 T C SLC6A18 Missense_Mutation p.Y346H 0.14 deleterious(0) probably_damaging(0.996) TCGA-66-2786-01 5 16754955 16754955 G C MYO10 Missense_Mutation p.I637M 0.18 deleterious(0) possibly_damaging(0.521) TCGA-66-2786-01 5 176673711 176673711 C T NSD1 Nonsense_Mutation p.R1471* 0.07 TCGA-66-2786-01 5 178489082 178489082 C T ZNF354C Silent p.L5L 0.13 TCGA-66-2786-01 5 179007956 179007956 G C RUFY1 Missense_Mutation p.R300T 0.35 tolerated(0.07) benign(0.164) TCGA-66-2786-01 5 1816017 1816017 A G NDUFS6 Missense_Mutation p.Q121R 0.09 tolerated(0.05) benign(0.013) TCGA-66-2786-01 5 21752226 21752226 C G CDH12 Missense_Mutation p.D669H 0.06 deleterious(0) probably_damaging(1) TCGA-66-2786-01 5 24488152 24488152 C A CDH10 Nonsense_Mutation p.G663* 0.17 TCGA-66-2786-01 5 24535363 24535363 G C CDH10 Missense_Mutation p.N224K 0.25 deleterious(0) probably_damaging(0.972) TCGA-66-2786-01 5 33527326 33527326 C A ADAMTS12 Missense_Mutation p.R1584S 0.11 tolerated(0.29) unknown(0) TCGA-66-2786-01 5 40681532 40681532 C A PTGER4 Missense_Mutation p.S146Y 0.05 deleterious(0.02) benign(0.374) TCGA-66-2786-01 5 41927307 41927307 A G FBXO4 Missense_Mutation p.I128V 0.27 tolerated(0.44) benign(0) TCGA-66-2786-01 5 43704672 43704672 C T NNT 3'UTR 0.38 TCGA-66-2786-01 5 70844517 70844517 A G BDP1 Silent p.P2251P 0.10 TCGA-66-2786-01 5 78181606 78181606 G A ARSB Nonsense_Mutation p.R315* 0.38 TCGA-66-2786-01 6 123377156 123377156 C G CLVS2 Missense_Mutation p.P294R 0.39 deleterious(0.04) possibly_damaging(0.781) TCGA-66-2786-01 6 127771330 127771330 C G KIAA0408 Silent p.L101L 0.12 TCGA-66-2786-01 6 144165676 144165676 C G LTV1 Missense_Mutation p.H19Q 0.08 tolerated(0.14) probably_damaging(0.926) TCGA-66-2786-01 6 146216035 146216035 G C SHPRH Missense_Mutation p.L1532V 0.08 deleterious(0) probably_damaging(0.993) TCGA-66-2786-01 6 152576119 152576119 C A SYNE1 Missense_Mutation p.D6456Y 0.41 possibly_damaging(0.494) TCGA-66-2786-01 6 152576120 152576120 T A SYNE1 Missense_Mutation p.E6455D 0.40 benign(0.42) TCGA-66-2786-01 6 24357599 24357599 G A KAAG1 5'UTR 0.15 TCGA-66-2786-01 6 26205249 26205249 A T HIST1H4E 3'UTR 0.38 TCGA-66-2786-01 6 26509079 26509079 C T BTN1A1 Missense_Mutation p.R420C 0.15 tolerated(0.29) benign(0.064) TCGA-66-2786-01 6 29911963 29911963 G A HLA-A Nonsense_Mutation p.W228* 0.03 TCGA-66-2786-01 6 35949981 35949981 C G SLC26A8 Splice_Site p.X315_splice 0.45 TCGA-66-2786-01 6 43410821 43410821 C G ABCC10 Silent p.L780L 0.11 TCGA-66-2786-01 6 52992941 52992941 G A GCM1 3'UTR 0.11 TCGA-66-2786-01 6 52992942 52992942 G A GCM1 3'UTR 0.10 TCGA-66-2786-01 6 52992981 52992981 G A GCM1 3'UTR 0.14 TCGA-66-2786-01 6 52993048 52993048 G T GCM1 Missense_Mutation p.H423N 0.15 deleterious(0.01) probably_damaging(0.928) TCGA-66-2786-01 6 52993120 52993120 G A GCM1 Nonsense_Mutation p.Q399* 0.13 TCGA-66-2786-01 6 52993134 52993134 G T GCM1 Missense_Mutation p.A394D 0.13 tolerated(0.29) benign(0.023) TCGA-66-2786-01 6 52993228 52993228 G C GCM1 Missense_Mutation p.L363V 0.15 tolerated(0.45) benign(0.003) TCGA-66-2786-01 6 52993240 52993240 G A GCM1 Missense_Mutation p.P359S 0.15 tolerated(0.36) benign(0.006) TCGA-66-2786-01 6 56473173 56473173 A G DST Intron 0.25 TCGA-66-2786-01 6 70993461 70993461 A G COL9A1 Silent p.H253H 0.33 TCGA-66-2786-01 6 71298447 71298447 C G C6orf57 3'UTR 0.25 TCGA-66-2786-01 6 76582983 76582983 A G MYO6 Silent p.E681E 0.06 TCGA-66-2786-01 6 79577214 79577214 C G IRAK1BP1 5'UTR 0.11 TCGA-66-2786-01 7 100867350 100867350 G A ZNHIT1 3'UTR 0.30 TCGA-66-2786-01 7 113518175 113518175 C T PPP1R3A Missense_Mutation p.R991K 0.29 tolerated(0.15) benign(0.002) TCGA-66-2786-01 7 122261657 122261657 C A CADPS2 Missense_Mutation p.G328C 0.12 deleterious(0) probably_damaging(1) TCGA-66-2786-01 7 142606734 142606734 C T TRPV5 Missense_Mutation p.R606Q 0.21 deleterious(0) possibly_damaging(0.803) TCGA-66-2786-01 7 14378241 14378241 C A DGKB Missense_Mutation p.G675V 0.28 deleterious(0) probably_damaging(1) TCGA-66-2786-01 7 143792604 143792604 T A OR2A12 Missense_Mutation p.M135K 0.03 deleterious(0) probably_damaging(0.934) TCGA-66-2786-01 7 150761614 150761614 C A SLC4A2 Nonsense_Mutation p.Y73* 0.22 TCGA-66-2786-01 7 47409020 47409020 C A TNS3 Missense_Mutation p.R408L 0.31 tolerated(0.22) benign(0.011) TCGA-66-2786-01 7 92985380 92985380 C T CCDC132 Silent p.I921I 0.23 TCGA-66-2786-01 8 110417312 110417312 C T PKHD1L1 Missense_Mutation p.S541L 0.24 tolerated(0.41) benign(0.002) TCGA-66-2786-01 8 113418818 113418818 G A CSMD3 Missense_Mutation p.A1915V 0.07 deleterious(0.02) possibly_damaging(0.714) TCGA-66-2786-01 8 124335278 124335279 - T ATAD2 Frame_Shift_Ins p.S1344Kfs*28 0.13 TCGA-66-2786-01 8 139706804 139706804 C A COL22A1 Nonsense_Mutation p.G883* 0.25 TCGA-66-2786-01 8 144993708 144993708 C G PLEC Silent p.L3564L 0.14 TCGA-66-2786-01 8 20031880 20031880 G C SLC18A1 Missense_Mutation p.S208C 0.23 deleterious(0.01) probably_damaging(0.981) TCGA-66-2786-01 8 21960417 21960417 C A FAM160B2 Missense_Mutation p.S736Y 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.646) TCGA-66-2786-01 8 39068795 39068795 C A ADAM32 Silent p.G395G 0.28 TCGA-66-2786-01 8 39840260 39840260 G T IDO2 Silent p.L148L 0.26 TCGA-66-2786-01 8 75275219 75275219 C G GDAP1 Missense_Mutation p.L209V 0.11 deleterious(0) probably_damaging(0.998) TCGA-66-2786-01 8 85097190 85097190 G T RALYL 5'UTR 0.30 TCGA-66-2786-01 9 13138074 13138074 C A MPDZ Missense_Mutation p.G1361V 0.36 deleterious(0) probably_damaging(1) TCGA-66-2786-01 9 133753888 133753888 G C ABL1 Missense_Mutation p.E472Q 0.06 tolerated(0.06) probably_damaging(0.997) TCGA-66-2786-01 9 140509521 140509521 C T ARRDC1 Intron 0.30 TCGA-66-2786-01 9 21974748 21974748 C A CDKN2A Nonsense_Mutation p.E27* 0.31 TCGA-66-2786-01 9 79954514 79954514 A G VPS13A Missense_Mutation p.H2154R 0.28 tolerated(0.07) benign(0.206) TCGA-66-2786-01 9 88943339 88943339 G C ZCCHC6 Missense_Mutation p.I508M 0.26 tolerated(0.06) benign(0.14) TCGA-66-2786-01 9 95599544 95599544 C A ANKRD19P RNA 0.19 TCGA-66-2786-01 9 98244316 98244316 C T PTCH1 Missense_Mutation p.E221K 0.04 deleterious(0.03) benign(0.403) TCGA-66-2786-01 X 100087736 100087736 C A CSTF2 Missense_Mutation p.P349T 0.16 deleterious_low_confidence(0) benign(0.038) TCGA-66-2786-01 X 102005603 102005603 A T BHLHB9 3'UTR 0.30 TCGA-66-2786-01 X 102339335 102339335 G C NXF3 Missense_Mutation p.P96A 0.30 tolerated(0.09) benign(0.271) TCGA-66-2786-01 X 105451326 105451326 A G MUM1L1 Missense_Mutation p.K634R 0.20 tolerated(0.22) possibly_damaging(0.786) TCGA-66-2786-01 X 125299528 125299528 G A DCAF12L2 Missense_Mutation p.S127L 0.26 tolerated(0.07) possibly_damaging(0.721) TCGA-66-2786-01 X 12885667 12885667 C A TLR7 5'UTR 0.26 TCGA-66-2786-01 X 129189940 129189940 G T BCORL1 Missense_Mutation p.E1655D 0.23 probably_damaging(0.997) TCGA-66-2786-01 X 13790961 13790961 G C GPM6B 3'UTR 0.16 TCGA-66-2786-01 X 142718090 142718090 G A SLITRK4 Nonsense_Mutation p.Q279* 0.31 TCGA-66-2786-01 X 147024736 147024736 G C FMR1 Missense_Mutation p.R454P 0.22 deleterious(0.01) probably_damaging(0.99) TCGA-66-2786-01 X 150869314 150869314 G C PRRG3 Missense_Mutation p.V169L 0.22 tolerated(0.36) benign(0.007) TCGA-66-2786-01 X 152818658 152818658 C T ATP2B3 Silent p.N663N 0.15 TCGA-66-2786-01 X 152821585 152821585 C T ATP2B3 Missense_Mutation p.R713W 0.28 deleterious(0) probably_damaging(0.998) TCGA-66-2786-01 X 152937050 152937050 C A PNCK Missense_Mutation p.Q247H 0.26 deleterious(0.03) possibly_damaging(0.8) TCGA-66-2786-01 X 153070266 153070266 G T PDZD4 Missense_Mutation p.D284E 0.09 deleterious(0.03) probably_damaging(1) TCGA-66-2786-01 X 154507354 154507354 C T CLIC2 Splice_Site p.X195_splice 0.22 TCGA-66-2786-01 X 15793398 15793398 A T CA5B Missense_Mutation p.K195N 0.08 deleterious(0) benign(0.045) TCGA-66-2786-01 X 17750110 17750110 C A NHS Silent p.P1473P 0.23 TCGA-66-2786-01 X 19028829 19028829 G T GPR64 Silent p.S389S 0.26 TCGA-66-2786-01 X 2773121 2773121 G T GYG2 Missense_Mutation p.V169L 0.31 deleterious(0) probably_damaging(0.974) TCGA-66-2786-01 X 27839977 27839977 A G MAGEB10 Missense_Mutation p.D185G 0.06 tolerated(0.11) benign(0.345) TCGA-66-2786-01 X 39934138 39934138 C G BCOR Missense_Mutation p.G154A 0.23 tolerated(0.06) possibly_damaging(0.799) TCGA-66-2786-01 X 41075775 41075775 A T USP9X Silent p.S1985S 0.33 TCGA-66-2786-01 X 48418240 48418240 A G TBC1D25 Missense_Mutation p.H315R 0.21 tolerated(0.14) possibly_damaging(0.783) TCGA-66-2786-01 X 50094351 50094351 T C CCNB3 Missense_Mutation p.Y1358H 0.30 tolerated(0.8) benign(0.034) TCGA-66-2786-01 X 51149908 51149908 C T CXorf67 Nonsense_Mutation p.Q14* 0.20 TCGA-66-2786-01 X 57620546 57620546 C G ZXDB Missense_Mutation p.Q689E 0.17 deleterious(0.04) benign(0.222) TCGA-66-2786-01 X 67936270 67936270 G T STARD8 Missense_Mutation p.K98N 0.22 deleterious(0) possibly_damaging(0.684) TCGA-66-2786-01 X 69283241 69283241 G T OTUD6A Nonstop_Mutation p.*289Yext*5 0.37 TCGA-66-2786-01 X 70389799 70389799 C A NLGN3 Missense_Mutation p.P800Q 0.41 deleterious_low_confidence(0) probably_damaging(1) TCGA-66-2786-01 X 76938248 76938248 C T ATRX Missense_Mutation p.A834T 0.04 benign(0.003) TCGA-66-2787-01 10 103343206 103343206 C A POLL Intron 0.26 TCGA-66-2787-01 10 113924340 113924340 G A GPAM Missense_Mutation p.P417L 0.32 tolerated(0.36) benign(0.178) TCGA-66-2787-01 10 115348616 115348616 G - NRAP 3'UTR 0.26 TCGA-66-2787-01 10 115348836 115348836 C G NRAP Silent p.R1697R 0.40 TCGA-66-2787-01 10 11997498 11997498 T C UPF2 Silent p.Q861Q 0.26 TCGA-66-2787-01 10 127685989 127685989 G A FANK1 Silent p.R158R 0.32 TCGA-66-2787-01 10 135038410 135038410 G A KNDC1 3'UTR 0.36 TCGA-66-2787-01 10 14572459 14572459 G A FAM107B Silent p.I175I 0.10 TCGA-66-2787-01 10 21115440 21115440 C T NEBL Missense_Mutation p.G602D 0.44 deleterious(0) probably_damaging(0.994) TCGA-66-2787-01 10 27306604 27306604 C A ANKRD26 Nonsense_Mutation p.E1445* 0.54 TCGA-66-2787-01 10 31809581 31809581 G A ZEB1 Missense_Mutation p.E441K 0.51 tolerated(0.77) benign(0.199) TCGA-66-2787-01 10 37508167 37508167 C G ANKRD30A Missense_Mutation p.T1120R 0.35 deleterious(0) possibly_damaging(0.86) TCGA-66-2787-01 10 48413941 48413941 A T GDF2 Silent p.A309A 0.44 TCGA-66-2787-01 10 49628312 49628312 C T MAPK8 Missense_Mutation p.R189C 0.37 deleterious(0) probably_damaging(0.998) TCGA-66-2787-01 10 49628313 49628313 G T MAPK8 Missense_Mutation p.R189L 0.37 deleterious(0) probably_damaging(0.975) TCGA-66-2787-01 10 50530641 50530641 C G C10orf71 Missense_Mutation p.S17R 0.26 deleterious(0) probably_damaging(0.999) TCGA-66-2787-01 10 75290488 75290488 G A USP54 Missense_Mutation p.P474L 0.19 deleterious(0.03) benign(0.002) TCGA-66-2787-01 10 8055717 8055717 G T TAF3 Missense_Mutation p.Q864H 0.39 deleterious(0) unknown(0) TCGA-66-2787-01 10 91405006 91405006 C G PANK1 Silent p.A18A 0.50 TCGA-66-2787-01 11 103325989 103325989 A T DYNC2H1 Missense_Mutation p.T4185S 0.43 benign(0.328) TCGA-66-2787-01 11 107833106 107833106 C A RAB39A 3'UTR 0.48 TCGA-66-2787-01 11 114112921 114112921 G - ZBTB16 Frame_Shift_Del p.K497Sfs*121 0.41 TCGA-66-2787-01 11 123909083 123909083 C A OR10G7 Missense_Mutation p.C209F 0.46 deleterious(0) probably_damaging(1) TCGA-66-2787-01 11 124440836 124440836 C G OR8A1 Missense_Mutation p.S291C 0.12 deleterious(0) probably_damaging(1) TCGA-66-2787-01 11 124481592 124481592 T C PANX3 Missense_Mutation p.L47S 0.32 deleterious(0) probably_damaging(0.999) TCGA-66-2787-01 11 134212647 134212647 G T GLB1L2 Splice_Site p.X29_splice 0.52 TCGA-66-2787-01 11 2167579 2167579 C A INS-IGF2 3'Flank 0.38 TCGA-66-2787-01 11 2167580 2167580 C A INS-IGF2 3'Flank 0.38 TCGA-66-2787-01 11 30033705 30033705 C A KCNA4 Missense_Mutation p.C174F 0.22 tolerated(0.1) probably_damaging(0.982) TCGA-66-2787-01 11 31822244 31822244 G A PAX6 Missense_Mutation p.T187M 0.34 tolerated(0.15) benign(0.11) TCGA-66-2787-01 11 4824666 4824666 G - OR52R1 Frame_Shift_Del p.P316Pfs*? 0.12 TCGA-66-2787-01 11 49214371 49214371 C A FOLH1 Missense_Mutation p.A163S 0.23 deleterious(0) probably_damaging(0.999) TCGA-66-2787-01 11 5020998 5020998 G C OR51L1 Missense_Mutation p.M262I 0.11 tolerated(0.45) benign(0.006) TCGA-66-2787-01 11 5142501 5142501 A G OR52A4 RNA 0.11 TCGA-66-2787-01 11 55136241 55136242 - A OR4A15 Frame_Shift_Ins p.I295Nfs*2 0.14 TCGA-66-2787-01 11 5537174 5537174 C A UBQLNL Silent p.V166V 0.26 TCGA-66-2787-01 11 55541493 55541493 C A OR5D13 Missense_Mutation p.P194T 0.22 tolerated(0.98) benign(0.05) TCGA-66-2787-01 11 55681780 55681780 G T OR5W2 Silent p.P93P 0.19 TCGA-66-2787-01 11 55761640 55761640 C T OR5F1 Silent p.L154L 0.29 TCGA-66-2787-01 11 55926940 55926940 A G OR8K5 Missense_Mutation p.L285P 0.08 deleterious_low_confidence(0) possibly_damaging(0.907) TCGA-66-2787-01 11 56043811 56043811 A T OR5T1 Missense_Mutation p.I233F 0.26 deleterious(0) possibly_damaging(0.729) TCGA-66-2787-01 11 57886523 57886523 A G OR9I1 Missense_Mutation p.Y132H 0.36 deleterious(0) probably_damaging(0.993) TCGA-66-2787-01 11 58206843 58206843 T A OR5B12 Missense_Mutation p.N261I 0.19 deleterious_low_confidence(0) benign(0.017) TCGA-66-2787-01 11 60102436 60102436 A T MS4A6E Missense_Mutation p.Q23L 0.39 deleterious(0) benign(0.431) TCGA-66-2787-01 11 60102450 60102450 G T MS4A6E Nonsense_Mutation p.E28* 0.30 TCGA-66-2787-01 11 60150658 60150658 C A MS4A7 Missense_Mutation p.T15K 0.23 deleterious(0.01) possibly_damaging(0.649) TCGA-66-2787-01 11 6238899 6238899 T A FAM160A2 Silent p.P653P 0.26 TCGA-66-2787-01 11 6243821 6243821 T A FAM160A2 Missense_Mutation p.I348F 0.23 deleterious(0.01) possibly_damaging(0.866) TCGA-66-2787-01 11 6290904 6290904 G T CCKBR Nonsense_Mutation p.E53* 0.31 TCGA-66-2787-01 11 63175607 63175607 T A SLC22A9 Missense_Mutation p.L438M 0.60 deleterious(0.02) possibly_damaging(0.902) TCGA-66-2787-01 11 6661842 6661842 G T DCHS1 Silent p.R335R 0.18 TCGA-66-2787-01 11 6816414 6816414 G T OR6A2 Missense_Mutation p.P176T 0.13 tolerated(0.09) probably_damaging(1) TCGA-66-2787-01 11 74013462 74013462 G - P4HA3 Frame_Shift_Del p.K174Nfs*53 0.31 TCGA-66-2787-01 11 75442217 75442217 G A MOGAT2 Silent p.S297S 0.43 TCGA-66-2787-01 11 88338018 88338018 C A GRM5 Missense_Mutation p.G421V 0.41 deleterious(0.03) probably_damaging(1) TCGA-66-2787-01 11 89059961 89059961 C A NOX4 Missense_Mutation p.G567V 0.49 deleterious(0) possibly_damaging(0.474) TCGA-66-2787-01 11 92715302 92715302 G A MTNR1B Missense_Mutation p.A305T 0.07 deleterious(0.01) probably_damaging(0.996) TCGA-66-2787-01 11 93797542 93797542 A G HEPHL1 Missense_Mutation p.E225G 0.22 tolerated(0.07) benign(0.013) TCGA-66-2787-01 12 100806574 100806574 C A SLC17A8 Missense_Mutation p.L405M 0.16 deleterious(0.01) probably_damaging(1) TCGA-66-2787-01 12 102468805 102468805 G T NUP37 Missense_Mutation p.Q281K 0.38 tolerated(1) benign(0.001) TCGA-66-2787-01 12 11174863 11174863 C A TAS2R19 Missense_Mutation p.S103I 0.24 deleterious(0) probably_damaging(0.989) TCGA-66-2787-01 12 117287248 117287248 T C RNFT2 Missense_Mutation p.Y444H 0.46 deleterious(0) probably_damaging(0.996) TCGA-66-2787-01 12 124422120 124422120 G T CCDC92 Missense_Mutation p.Q161K 0.11 deleterious(0) probably_damaging(0.99) TCGA-66-2787-01 12 125396191 125396191 A G UBC 3'UTR 0.40 TCGA-66-2787-01 12 129299466 129299466 G T SLC15A4 Nonsense_Mutation p.C232* 0.29 TCGA-66-2787-01 12 129569127 129569127 G A TMEM132D Missense_Mutation p.P522S 0.21 deleterious(0.01) probably_damaging(1) TCGA-66-2787-01 12 129822289 129822289 G C TMEM132D Missense_Mutation p.Q397E 0.14 deleterious(0) benign(0.299) TCGA-66-2787-01 12 21069129 21069129 C G SLCO1B3 Missense_Mutation p.T686R 0.32 tolerated(0.45) benign(0.019) TCGA-66-2787-01 12 330116 330116 A G SLC6A13 Nonstop_Mutation p.*603Qext*75 0.22 TCGA-66-2787-01 12 39967558 39967558 C A ABCD2 Nonsense_Mutation p.G655* 0.12 TCGA-66-2787-01 12 41318436 41318436 C A CNTN1 Missense_Mutation p.P160T 0.22 deleterious(0.01) probably_damaging(0.981) TCGA-66-2787-01 12 48090107 48090107 T G RPAP3 Missense_Mutation p.N166T 0.25 deleterious(0) probably_damaging(0.982) TCGA-66-2787-01 12 49048286 49048286 C T KANSL2 Intron 0.21 TCGA-66-2787-01 12 49952448 49952448 G T MCRS1 Missense_Mutation p.A469D 0.43 deleterious(0.01) probably_damaging(0.931) TCGA-66-2787-01 12 53189723 53189723 G T KRT3 Missense_Mutation p.S35Y 0.22 tolerated(0.11) unknown(0) TCGA-66-2787-01 12 53410353 53410353 C A EIF4B Missense_Mutation p.P37Q 0.10 deleterious(0.02) possibly_damaging(0.804) TCGA-66-2787-01 12 55421039 55421039 C A NEUROD4 Missense_Mutation p.D272E 0.22 tolerated(0.62) benign(0.006) TCGA-66-2787-01 12 56031355 56031355 T C OR10P1 Missense_Mutation p.L227P 0.26 deleterious(0) probably_damaging(0.998) TCGA-66-2787-01 12 67700314 67700314 G C CAND1 Missense_Mutation p.G956R 0.33 deleterious(0) probably_damaging(1) TCGA-66-2787-01 12 6884475 6884475 G T LAG3 Missense_Mutation p.G273V 0.32 deleterious(0.01) possibly_damaging(0.589) TCGA-66-2787-01 12 71833879 71833879 G C LGR5 Missense_Mutation p.G7R 0.36 tolerated_low_confidence(0.3) benign(0.003) TCGA-66-2787-01 12 72893378 72893378 A T TRHDE Missense_Mutation p.D517V 0.39 deleterious(0.01) probably_damaging(0.995) TCGA-66-2787-01 12 78513023 78513023 C A NAV3 Missense_Mutation p.T1016N 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-66-2787-01 12 81112685 81112685 C G MYF5 Missense_Mutation p.S208C 0.24 deleterious(0) probably_damaging(0.999) TCGA-66-2787-01 12 85255584 85255584 T A SLC6A15 Missense_Mutation p.T674S 0.21 tolerated(0.23) benign(0.01) TCGA-66-2787-01 12 85674127 85674127 C T ALX1 Missense_Mutation p.H30Y 0.13 deleterious_low_confidence(0.01) benign(0.328) TCGA-66-2787-01 13 103492203 103492203 T A BIVM Missense_Mutation p.D500E 0.33 tolerated_low_confidence(0.29) benign(0.003) TCGA-66-2787-01 13 103492204 103492204 G T BIVM Missense_Mutation p.G501W 0.34 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-66-2787-01 13 108882199 108882199 A C ABHD13 Silent p.S211S 0.49 TCGA-66-2787-01 13 114784270 114784270 C A RASA3 Missense_Mutation p.R304L 0.47 tolerated(0.15) probably_damaging(0.994) TCGA-66-2787-01 13 24471155 24471155 G C C1QTNF9B 5'UTR 0.28 TCGA-66-2787-01 13 25671601 25671601 T C PABPC3 Missense_Mutation p.I422T 0.31 tolerated(0.16) benign(0.001) TCGA-66-2787-01 13 32911471 32911471 G C BRCA2 Missense_Mutation p.W993C 0.36 tolerated(0.09) benign(0.132) TCGA-66-2787-01 13 38211017 38211017 G T TRPC4 3'UTR 0.43 TCGA-66-2787-01 13 47409740 47409740 C A HTR2A Missense_Mutation p.Q216H 0.11 tolerated(0.29) benign(0.016) TCGA-66-2787-01 13 53422133 53422133 C A PCDH8 Missense_Mutation p.G147C 0.62 deleterious(0) possibly_damaging(0.559) TCGA-66-2787-01 14 101515983 101515983 C T MIR655 RNA 0.39 TCGA-66-2787-01 14 102698904 102698904 C A MOK Missense_Mutation p.Q278H 0.34 deleterious(0.01) possibly_damaging(0.808) TCGA-66-2787-01 14 105419058 105419058 G T AHNAK2 Silent p.A910A 0.19 TCGA-66-2787-01 14 106236825 106236825 C - IGHG3 Frame_Shift_Del p.C129Afs*54 0.28 TCGA-66-2787-01 14 106494219 106494219 G A IGHV2-5 Silent p.T91T 0.26 TCGA-66-2787-01 14 106494220 106494220 G T IGHV2-5 Missense_Mutation p.T91N 0.26 deleterious(0.01) benign(0.042) TCGA-66-2787-01 14 106963072 106963072 G T IGHV1-45 Silent p.I70I 0.28 TCGA-66-2787-01 14 20389602 20389602 C A OR4K5 Silent p.T279T 0.21 TCGA-66-2787-01 14 23745067 23745067 G C HOMEZ Missense_Mutation p.P457R 0.20 tolerated(0.15) possibly_damaging(0.565) TCGA-66-2787-01 14 24517437 24517437 T A LRRC16B 5'Flank 0.16 TCGA-66-2787-01 14 31055950 31055950 G A G2E3 Missense_Mutation p.D22N 0.23 tolerated(0.18) benign(0.16) TCGA-66-2787-01 14 36982447 36982447 C A SFTA3 5'UTR 0.30 TCGA-66-2787-01 14 39514366 39514366 C A SEC23A Splice_Site p.X633_splice 0.16 TCGA-66-2787-01 14 44975700 44975700 A G FSCB Missense_Mutation p.I164T 0.17 deleterious(0.01) benign(0.434) TCGA-66-2787-01 14 45687519 45687519 A G MIS18BP1 Silent p.T936T 0.10 TCGA-66-2787-01 14 47530539 47530539 C A MDGA2 Missense_Mutation p.D480Y 0.20 deleterious(0) probably_damaging(1) TCGA-66-2787-01 14 47530540 47530540 C A MDGA2 Silent p.T479T 0.20 TCGA-66-2787-01 14 51223968 51223968 G T NIN Missense_Mutation p.D1260E 0.13 tolerated(0.51) benign(0.014) TCGA-66-2787-01 14 52520461 52520461 G T NID2 Missense_Mutation p.P422H 0.15 deleterious(0.02) benign(0.053) TCGA-66-2787-01 14 52899101 52899102 - A TXNDC16 Frame_Shift_Ins p.W800Lfs*3 0.15 TCGA-66-2787-01 14 72944990 72944990 C A RGS6 Missense_Mutation p.N269K 0.19 tolerated(1) benign(0.004) TCGA-66-2787-01 14 75329286 75329286 C T PROX2 Intron 0.10 TCGA-66-2787-01 14 80993276 80993276 C A CEP128 Missense_Mutation p.R1003S 0.26 tolerated(0.2) benign(0.002) TCGA-66-2787-01 14 89061028 89061028 G C ZC3H14 Intron 0.28 TCGA-66-2787-01 14 92488010 92488010 C T TRIP11 Missense_Mutation p.D160N 0.38 tolerated(0.05) possibly_damaging(0.81) TCGA-66-2787-01 14 96775918 96775918 C A ATG2B Missense_Mutation p.G1392V 0.15 tolerated(0.23) benign(0) TCGA-66-2787-01 15 101598339 101598339 G A LRRK1 Missense_Mutation p.E1558K 0.18 tolerated(0.24) benign(0.269) TCGA-66-2787-01 15 23048951 23048951 C G NIPA1 Missense_Mutation p.D290H 0.62 deleterious(0) probably_damaging(0.989) TCGA-66-2787-01 15 25470187 25470187 G A SNORD115-27 3'Flank 0.43 TCGA-66-2787-01 15 38794623 38794623 C T RASGRP1 Splice_Site p.X477_splice 0.24 TCGA-66-2787-01 15 43574172 43574172 C G TGM7 Missense_Mutation p.W407C 0.16 deleterious(0) probably_damaging(0.996) TCGA-66-2787-01 15 51503140 51503140 G T CYP19A1 Missense_Mutation p.H459Q 0.33 tolerated(0.48) benign(0.011) TCGA-66-2787-01 15 65771329 65771329 C T DPP8 Missense_Mutation p.E465K 0.28 tolerated(0.86) benign(0.338) TCGA-66-2787-01 15 74467411 74467411 G T ISLR Missense_Mutation p.R71M 0.12 tolerated(0.14) possibly_damaging(0.482) TCGA-66-2787-01 15 80478522 80478522 A T FAH Nonsense_Mutation p.K411* 0.41 TCGA-66-2787-01 15 83218354 83218354 G T CPEB1 Missense_Mutation p.Q419K 0.45 deleterious(0.04) probably_damaging(0.968) TCGA-66-2787-01 15 85115463 85115463 A T LINC00933 RNA 0.38 TCGA-66-2787-01 15 89400176 89400176 G A ACAN Missense_Mutation p.G1454R 0.36 deleterious(0.03) probably_damaging(1) TCGA-66-2787-01 15 91157683 91157683 A G CRTC3 Splice_Site p.X193_splice 0.36 TCGA-66-2787-01 15 98512595 98512595 G T ARRDC4 Missense_Mutation p.D290Y 0.14 deleterious(0) possibly_damaging(0.746) TCGA-66-2787-01 16 18856853 18856853 C A SMG1 Missense_Mutation p.W2039C 0.34 deleterious(0.02) probably_damaging(0.987) TCGA-66-2787-01 16 20043574 20043574 A G GPR139 Missense_Mutation p.V182A 0.29 tolerated(0.15) benign(0.016) TCGA-66-2787-01 16 23768853 23768853 C G CHP2 Silent p.S180S 0.31 TCGA-66-2787-01 16 29906726 29906726 C G SEZ6L2 Missense_Mutation p.G236A 0.32 deleterious(0.01) possibly_damaging(0.764) TCGA-66-2787-01 16 30522395 30522395 G T ITGAL Silent p.L908L 0.41 TCGA-66-2787-01 16 55530863 55530863 C A MMP2 Missense_Mutation p.R500S 0.32 tolerated(0.39) benign(0.017) TCGA-66-2787-01 16 56623902 56623902 G C MT3 Intron 0.36 TCGA-66-2787-01 16 69074319 69074319 A T TANGO6 Missense_Mutation p.T1035S 0.64 deleterious(0.01) benign(0.091) TCGA-66-2787-01 16 71483409 71483409 T C ZNF23 Silent p.L173L 0.37 TCGA-66-2787-01 16 72141386 72141386 G T DHX38 Silent p.P916P 0.57 TCGA-66-2787-01 16 72821528 72821528 C A ZFHX3 Missense_Mutation p.E3549D 0.36 unknown(0) TCGA-66-2787-01 16 75149456 75149456 A T LDHD Missense_Mutation p.S59T 0.33 tolerated(0.23) probably_damaging(0.979) TCGA-66-2787-01 16 772621 772621 G T CCDC78 3'UTR 0.44 TCGA-66-2787-01 16 78198080 78198080 G T WWOX Missense_Mutation p.G137V 0.38 deleterious(0) probably_damaging(0.999) TCGA-66-2787-01 16 8993508 8993508 C A USP7 Missense_Mutation p.D806Y 0.26 deleterious(0) probably_damaging(0.993) TCGA-66-2787-01 16 9862768 9862768 C A GRIN2A Silent p.L845L 0.18 TCGA-66-2787-01 17 10360881 10360881 A C MYH4 Missense_Mutation p.Y585D 0.69 deleterious(0) probably_damaging(0.99) TCGA-66-2787-01 17 10432170 10432170 G T MYH2 Missense_Mutation p.T1194K 0.16 deleterious(0.01) benign(0.42) TCGA-66-2787-01 17 11572467 11572467 G A DNAH9 Missense_Mutation p.G940R 0.06 benign(0.013) TCGA-66-2787-01 17 11896038 11896038 G A ZNF18 Missense_Mutation p.P37S 0.62 tolerated(0.16) benign(0.159) TCGA-66-2787-01 17 11984822 11984822 C A MAP2K4 Missense_Mutation p.P123Q 0.09 tolerated(0.42) possibly_damaging(0.461) TCGA-66-2787-01 17 12664015 12664015 G T MYOCD Nonsense_Mutation p.E794* 0.42 TCGA-66-2787-01 17 20425373 20425373 C T AC015818.3 RNA 0.50 TCGA-66-2787-01 17 26084309 26084309 G A NOS2 Missense_Mutation p.A1142V 0.32 tolerated(0.19) benign(0.009) TCGA-66-2787-01 17 27075299 27075299 C T TRAF4 Missense_Mutation p.P161L 0.28 tolerated(0.16) benign(0.302) TCGA-66-2787-01 17 3030761 3030761 C T OR1G1 Missense_Mutation p.G29R 0.50 deleterious(0.02) possibly_damaging(0.863) TCGA-66-2787-01 17 30677235 30677235 T G ZNF207 5'UTR 0.28 TCGA-66-2787-01 17 33501267 33501267 A T UNC45B Nonsense_Mutation p.K615* 0.22 TCGA-66-2787-01 17 36959000 36959000 C A CWC25 Silent p.R372R 0.26 TCGA-66-2787-01 17 38421393 38421393 G T WIPF2 Missense_Mutation p.G322V 0.20 tolerated(0.35) benign(0.231) TCGA-66-2787-01 17 39521219 39521219 G A KRT33B Silent p.S303S 0.24 TCGA-66-2787-01 17 47120878 47120878 G T IGF2BP1 Missense_Mutation p.S389I 0.25 tolerated(0.11) benign(0.304) TCGA-66-2787-01 17 53798268 53798268 C A TMEM100 Missense_Mutation p.R55L 0.31 deleterious(0) probably_damaging(0.994) TCGA-66-2787-01 17 54520245 54520245 A T ANKFN1 Missense_Mutation p.K353N 0.19 deleterious(0) possibly_damaging(0.812) TCGA-66-2787-01 17 65688927 65688927 G T PITPNC1 Missense_Mutation p.D308Y 0.22 deleterious_low_confidence(0) probably_damaging(0.946) TCGA-66-2787-01 17 65955663 65955663 C A BPTF Missense_Mutation p.L2645M 0.28 probably_damaging(0.994) TCGA-66-2787-01 17 71232591 71232591 G A C17orf80 Missense_Mutation p.E324K 0.10 tolerated(0.25) benign(0.002) TCGA-66-2787-01 17 72352885 72352885 G T BTBD17 Missense_Mutation p.R450S 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-66-2787-01 17 73780809 73780809 C G UNK 5'Flank 0.43 TCGA-66-2787-01 17 73969781 73969781 G A ACOX1 Intron 0.32 TCGA-66-2787-01 17 7578458 7578458 G - TP53 Frame_Shift_Del p.R158Afs*12 0.41 TCGA-66-2787-01 17 7644287 7644287 C G DNAH2 Missense_Mutation p.R556G 0.41 benign(0.009) TCGA-66-2787-01 17 79667556 79667556 C T HGS Missense_Mutation p.P648S 0.23 tolerated(0.2) benign(0.001) TCGA-66-2787-01 17 9923211 9923211 G T GAS7 Missense_Mutation p.P63T 0.28 tolerated_low_confidence(0.63) benign(0.007) TCGA-66-2787-01 18 14543074 14543074 C A POTEC Missense_Mutation p.M24I 0.16 deleterious_low_confidence(0) benign(0.38) TCGA-66-2787-01 18 24496619 24496619 T A CHST9 Missense_Mutation p.K312N 0.30 deleterious(0) probably_damaging(1) TCGA-66-2787-01 18 2945742 2945742 T C LPIN2 Intron 0.24 TCGA-66-2787-01 18 32398154 32398154 T A DTNA Missense_Mutation p.C246S 0.23 deleterious(0.01) possibly_damaging(0.749) TCGA-66-2787-01 18 335079 335079 G A COLEC12 Silent p.P493P 0.17 TCGA-66-2787-01 18 43664494 43664494 T A ATP5A1 Missense_Mutation p.H519L 0.12 tolerated_low_confidence(0.07) benign(0.175) TCGA-66-2787-01 18 48604856 48604856 C T SMAD4 3'UTR 0.18 TCGA-66-2787-01 18 5433490 5433490 C A EPB41L3 Missense_Mutation p.G297V 0.15 deleterious(0) probably_damaging(1) TCGA-66-2787-01 18 73000059 73000059 C A TSHZ1 Silent p.I854I 0.29 TCGA-66-2787-01 19 14288365 14288365 C A LPHN1 Missense_Mutation p.A88S 0.22 tolerated(0.21) possibly_damaging(0.845) TCGA-66-2787-01 19 1438407 1438407 T A RPS15 5'UTR 0.09 TCGA-66-2787-01 19 15083565 15083565 A T SLC1A6 Missense_Mutation p.L53Q 0.16 deleterious(0) probably_damaging(0.993) TCGA-66-2787-01 19 20117806 20117806 T C ZNF682 Missense_Mutation p.T169A 0.41 tolerated(0.06) benign(0.071) TCGA-66-2787-01 19 21300743 21300743 A T ZNF714 Nonsense_Mutation p.K425* 0.29 TCGA-66-2787-01 19 21588023 21588023 G T ZNF493 Silent p.V41V 0.18 TCGA-66-2787-01 19 23836363 23836363 C A ZNF675 Missense_Mutation p.G458C 0.11 deleterious(0) probably_damaging(1) TCGA-66-2787-01 19 2717615 2717615 C A DIRAS1 Missense_Mutation p.G64C 0.27 deleterious(0) probably_damaging(1) TCGA-66-2787-01 19 30164785 30164785 G C PLEKHF1 Missense_Mutation p.Q13H 0.27 deleterious(0) possibly_damaging(0.876) TCGA-66-2787-01 19 37618677 37618677 C G ZNF420 Missense_Mutation p.Q262E 0.28 tolerated(0.19) benign(0.168) TCGA-66-2787-01 19 38911579 38911579 G T RASGRP4 Missense_Mutation p.L116M 0.29 tolerated(0.17) benign(0.025) TCGA-66-2787-01 19 38993342 38993342 G A RYR1 Missense_Mutation p.E2604K 0.30 benign(0.037) TCGA-66-2787-01 19 39100635 39100635 G T MAP4K1 Silent p.R281R 0.33 TCGA-66-2787-01 19 40093191 40093191 G T LGALS13 5'UTR 0.15 TCGA-66-2787-01 19 40368472 40368472 G A FCGBP Silent p.T4292T 0.19 TCGA-66-2787-01 19 40433521 40433521 T A FCGBP Missense_Mutation p.T250S 0.36 benign(0.444) TCGA-66-2787-01 19 42486229 42486229 C A ATP1A3 Missense_Mutation p.M354I 0.24 deleterious(0) probably_damaging(0.988) TCGA-66-2787-01 19 43430142 43430142 G A PSG7 Silent p.T342T 0.21 TCGA-66-2787-01 19 45317915 45317915 G T BCAM Nonsense_Mutation p.G326* 0.30 TCGA-66-2787-01 19 46313920 46313920 C G RSPH6A Missense_Mutation p.A277P 0.28 tolerated(0.06) benign(0.111) TCGA-66-2787-01 19 49174065 49174066 - T NTN5 Frame_Shift_Ins p.T60Nfs*60 0.39 TCGA-66-2787-01 19 49658431 49658431 G A HRC Missense_Mutation p.L22F 0.39 tolerated(0.07) probably_damaging(0.969) TCGA-66-2787-01 19 49863239 49863239 C A TEAD2 Missense_Mutation p.G32W 0.24 deleterious(0) probably_damaging(0.991) TCGA-66-2787-01 19 51329879 51329879 C T KLK15 Missense_Mutation p.E206K 0.17 tolerated(0.09) possibly_damaging(0.715) TCGA-66-2787-01 19 51452188 51452188 G A KLK5 Silent p.N173N 0.23 TCGA-66-2787-01 19 51506353 51506353 C A KLK9 3'UTR 0.35 TCGA-66-2787-01 19 52403472 52403472 C G ZNF649 5'UTR 0.16 TCGA-66-2787-01 19 52448633 52448633 C T ZNF613 Silent p.L499L 0.29 TCGA-66-2787-01 19 53207958 53207958 C T ZNF611 3'UTR 0.12 TCGA-66-2787-01 19 53741317 53741317 G T ZNF677 Silent p.I221I 0.17 TCGA-66-2787-01 19 53848875 53848875 G T ZNF845 Silent p.L44L 0.16 TCGA-66-2787-01 19 54314451 54314451 G T NLRP12 Missense_Mutation p.S154R 0.30 deleterious(0) probably_damaging(0.921) TCGA-66-2787-01 19 56953379 56953379 G T ZNF667 Missense_Mutation p.P329T 0.19 deleterious(0) benign(0.259) TCGA-66-2787-01 19 57326183 57326183 C A PEG3 Silent p.R1209R 0.30 TCGA-66-2787-01 19 57646983 57646983 T G ZIM3 Missense_Mutation p.H241P 0.17 deleterious(0) probably_damaging(0.997) TCGA-66-2787-01 19 58038885 58038885 C A ZNF549 5'UTR 0.23 TCGA-66-2787-01 19 58187877 58187877 C A ZSCAN4 Missense_Mutation p.L122M 0.27 deleterious(0) probably_damaging(1) TCGA-66-2787-01 19 7152890 7152890 T C INSR Missense_Mutation p.D693G 0.20 tolerated(0.27) benign(0) TCGA-66-2787-01 19 9071136 9071136 T G MUC16 Missense_Mutation p.Q5437P 0.06 unknown(0) TCGA-66-2787-01 1 103355028 103355028 C A COL11A1 Nonsense_Mutation p.G1483* 0.45 TCGA-66-2787-01 1 110466223 110466223 G T CSF1 Missense_Mutation p.R327M 0.40 tolerated(0.18) benign(0.109) TCGA-66-2787-01 1 11187830 11187830 A C MTOR Missense_Mutation p.W2023G 0.08 deleterious(0) probably_damaging(0.999) TCGA-66-2787-01 1 112999425 112999425 A T CTTNBP2NL Missense_Mutation p.L437F 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-66-2787-01 1 149901565 149901565 G T MTMR11 Missense_Mutation p.Q631K 0.12 tolerated(0.32) possibly_damaging(0.872) TCGA-66-2787-01 1 151861829 151861829 C T THEM4 Missense_Mutation p.E103K 0.40 tolerated(0.57) benign(0.045) TCGA-66-2787-01 1 152006196 152006196 A G S100A11 Silent p.D28D 0.35 TCGA-66-2787-01 1 152328465 152328465 G T FLG2 Silent p.G599G 0.38 TCGA-66-2787-01 1 154931293 154931293 C T PYGO2 Missense_Mutation p.E395K 0.15 tolerated(0.08) possibly_damaging(0.636) TCGA-66-2787-01 1 156926247 156926247 C A ARHGEF11 Missense_Mutation p.D546Y 0.61 deleterious(0) probably_damaging(0.987) TCGA-66-2787-01 1 158369188 158369188 C T OR10T2 Silent p.E23E 0.19 TCGA-66-2787-01 1 161641426 161641426 G A FCGR2B Silent p.L126L 0.11 TCGA-66-2787-01 1 171509367 171509367 C T PRRC2C Missense_Mutation p.P919L 0.14 unknown(0) TCGA-66-2787-01 1 176564488 176564488 T A PAPPA2 Missense_Mutation p.L583H 0.57 deleterious(0) probably_damaging(0.998) TCGA-66-2787-01 1 177247876 177247876 G A BRINP2 Missense_Mutation p.C397Y 0.46 deleterious(0) possibly_damaging(0.459) TCGA-66-2787-01 1 179462086 179462086 G C AXDND1 Missense_Mutation p.K796N 0.42 deleterious(0.05) possibly_damaging(0.788) TCGA-66-2787-01 1 179632621 179632621 C T TDRD5 Nonsense_Mutation p.Q882* 0.41 TCGA-66-2787-01 1 185143653 185143653 A G SWT1 Missense_Mutation p.H125R 0.51 tolerated(0.77) benign(0) TCGA-66-2787-01 1 186946790 186946790 T C PLA2G4A Silent p.Y610Y 0.12 TCGA-66-2787-01 1 196274388 196274388 A T KCNT2 Silent p.S857S 0.11 TCGA-66-2787-01 1 200946367 200946367 T A KIF21B Missense_Mutation p.N1433I 0.09 deleterious(0) probably_damaging(0.999) TCGA-66-2787-01 1 202711560 202711560 A G KDM5B Missense_Mutation p.Y850H 0.13 tolerated(0.46) benign(0.019) TCGA-66-2787-01 1 207107865 207107865 G T PIGR Silent p.T535T 0.17 TCGA-66-2787-01 1 215848148 215848148 C A USH2A Missense_Mutation p.A4369S 0.51 benign(0.059) TCGA-66-2787-01 1 215848713 215848713 G T USH2A Missense_Mutation p.N4180K 0.33 benign(0.033) TCGA-66-2787-01 1 216405331 216405331 T A USH2A Missense_Mutation p.K986I 0.13 benign(0.222) TCGA-66-2787-01 1 23240007 23240007 A T EPHB2 Missense_Mutation p.N970Y 0.28 tolerated(0.1) possibly_damaging(0.891) TCGA-66-2787-01 1 241901793 241901793 T C WDR64 Splice_Site p.X431_splice 0.20 TCGA-66-2787-01 1 247151276 247151276 C - ZNF695 Frame_Shift_Del p.E181Kfs*17 0.13 TCGA-66-2787-01 1 247202712 247202712 C A ZNF670 Splice_Site p.X44_splice 0.27 TCGA-66-2787-01 1 247695176 247695176 C A OR2C3 Missense_Mutation p.G213V 0.57 tolerated(0.28) benign(0.103) TCGA-66-2787-01 1 247835814 247835814 T A OR13G1 Missense_Mutation p.E177V 0.17 deleterious(0) probably_damaging(0.99) TCGA-66-2787-01 1 248004340 248004340 G T OR11L1 Missense_Mutation p.P287T 0.34 deleterious(0) probably_damaging(0.969) TCGA-66-2787-01 1 248343551 248343551 C A OR2M2 Silent p.G88G 0.12 TCGA-66-2787-01 1 248366465 248366465 G C OR2M3 Silent p.L32L 0.16 TCGA-66-2787-01 1 248525048 248525048 C A OR2T4 Missense_Mutation p.P56T 0.13 tolerated(0.19) possibly_damaging(0.703) TCGA-66-2787-01 1 248525049 248525049 C T OR2T4 Missense_Mutation p.P56L 0.13 tolerated(0.05) possibly_damaging(0.703) TCGA-66-2787-01 1 248637406 248637406 T C OR2T3 Missense_Mutation p.I252T 0.29 deleterious(0.01) benign(0) TCGA-66-2787-01 1 3328212 3328212 G T PRDM16 Missense_Mutation p.G484V 0.44 deleterious(0) possibly_damaging(0.847) TCGA-66-2787-01 1 38019758 38019758 C A SNIP1 Missense_Mutation p.A25S 0.62 deleterious_low_confidence(0.01) benign(0.064) TCGA-66-2787-01 1 38261402 38261402 G T MANEAL Intron 0.30 TCGA-66-2787-01 1 43825396 43825396 G A CDC20 Missense_Mutation p.E111K 0.38 deleterious(0.04) benign(0.091) TCGA-66-2787-01 1 47504418 47504418 G T CYP4X1 Missense_Mutation p.D288Y 0.32 deleterious(0) probably_damaging(1) TCGA-66-2787-01 1 9129630 9129630 C A SLC2A5 5'UTR 0.29 TCGA-66-2787-01 1 9791432 9791432 C A CLSTN1 Silent p.A860A 0.37 TCGA-66-2787-01 20 31022723 31022723 A T ASXL1 Silent p.T736T 0.19 TCGA-66-2787-01 20 31381363 31381363 G A DNMT3B Missense_Mutation p.R363H 0.24 tolerated(0.19) benign(0) TCGA-66-2787-01 20 36375010 36375010 A T CTNNBL1 Splice_Site p.X156_splice 0.10 TCGA-66-2787-01 20 36375019 36375019 C G CTNNBL1 Intron 0.09 TCGA-66-2787-01 20 3888926 3888926 G A PANK2 Splice_Site p.X327_splice 0.26 TCGA-66-2787-01 20 40068760 40068760 C T CHD6 Missense_Mutation p.R1296K 0.17 tolerated(0.81) benign(0.066) TCGA-66-2787-01 20 44533578 44533578 T A PLTP Intron 0.34 TCGA-66-2787-01 20 55027876 55027876 G A CASS4 Silent p.V548V 0.14 TCGA-66-2787-01 20 57896155 57896155 A T EDN3 Missense_Mutation p.Q150L 0.24 deleterious(0.02) benign(0.224) TCGA-66-2787-01 20 62319501 62319501 G A RTEL1 Silent p.E559E 0.17 TCGA-66-2787-01 21 11038930 11038930 G A BAGE2 RNA 0.07 TCGA-66-2787-01 21 34635047 34635047 C A IFNAR2 Intron 0.38 TCGA-66-2787-01 21 39671524 39671536 TCACTGGGGCGTT - KCNJ15 Frame_Shift_Del p.T115Sfs*37 0.31 TCGA-66-2787-01 21 43510517 43510517 G T UMODL1 Silent p.T300T 0.37 TCGA-66-2787-01 21 47422441 47422441 G T COL6A1 Missense_Mutation p.V751L 0.36 deleterious(0.02) probably_damaging(0.992) TCGA-66-2787-01 22 17073266 17073266 A G CCT8L2 Missense_Mutation p.F59L 0.15 tolerated(1) benign(0.003) TCGA-66-2787-01 22 17680460 17680460 G C CECR1 Intron 0.22 TCGA-66-2787-01 22 25627687 25627687 G T CRYBB2 Missense_Mutation p.R189L 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-66-2787-01 22 29534767 29534767 C G KREMEN1 Missense_Mutation p.P374A 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.901) TCGA-66-2787-01 22 32889094 32889094 C G FBXO7 Missense_Mutation p.L324V 0.31 deleterious(0.04) probably_damaging(0.995) TCGA-66-2787-01 22 33712090 33712090 C T LARGE Missense_Mutation p.A478T 0.19 tolerated(0.46) probably_damaging(0.959) TCGA-66-2787-01 22 34046621 34046621 G A LARGE Missense_Mutation p.S47F 0.19 tolerated_low_confidence(0.08) benign(0.071) TCGA-66-2787-01 22 38993222 38993222 C T FAM227A Missense_Mutation p.D502N 0.31 tolerated(0.22) benign(0.026) TCGA-66-2787-01 22 39884066 39884066 C A MGAT3 Nonsense_Mutation p.C238* 0.27 TCGA-66-2787-01 22 44068001 44068001 C T EFCAB6 Missense_Mutation p.V498I 0.29 tolerated(0.17) benign(0.037) TCGA-66-2787-01 2 108608572 108608572 C T SLC5A7 Silent p.V63V 0.35 TCGA-66-2787-01 2 121708906 121708906 C T GLI2 Silent p.P114P 0.28 TCGA-66-2787-01 2 141245278 141245278 C A LRP1B Missense_Mutation p.D3051Y 0.26 possibly_damaging(0.861) TCGA-66-2787-01 2 141260667 141260667 G T LRP1B Silent p.R2843R 0.26 TCGA-66-2787-01 2 141806660 141806660 C T LRP1B Missense_Mutation p.D562N 0.13 possibly_damaging(0.539) TCGA-66-2787-01 2 145157345 145157345 G T ZEB2 Missense_Mutation p.T470N 0.15 tolerated(0.99) probably_damaging(0.998) TCGA-66-2787-01 2 149227994 149227994 A T MBD5 Missense_Mutation p.I828F 0.13 tolerated_low_confidence(0.08) benign(0.402) TCGA-66-2787-01 2 152385743 152385743 G T NEB Missense_Mutation p.A7239D 0.18 probably_damaging(1) TCGA-66-2787-01 2 15374743 15374743 C A NBAS Silent p.V2024V 0.18 TCGA-66-2787-01 2 155115576 155115576 C A GALNT13 Missense_Mutation p.N300K 0.10 tolerated(0.58) benign(0.001) TCGA-66-2787-01 2 159033127 159033127 G T CCDC148 Missense_Mutation p.T512K 0.13 deleterious(0) possibly_damaging(0.895) TCGA-66-2787-01 2 166848156 166848156 C T SCN1A Missense_Mutation p.G1877R 0.28 deleterious(0) probably_damaging(0.997) TCGA-66-2787-01 2 167760089 167760089 T A XIRP2 Missense_Mutation p.C33S 0.12 benign(0.011) TCGA-66-2787-01 2 168115219 168115219 C A XIRP2 3'UTR 0.23 TCGA-66-2787-01 2 170175293 170175293 A T LRP2 Missense_Mutation p.S97T 0.14 probably_damaging(0.926) TCGA-66-2787-01 2 178098804 178098804 C T NFE2L2 Missense_Mutation p.G81S 0.28 deleterious(0) probably_damaging(1) TCGA-66-2787-01 2 179426284 179426284 T C TTN Missense_Mutation p.E28192G 0.21 TCGA-66-2787-01 2 179553856 179553856 A T TTN Silent p.A10673A 0.13 TCGA-66-2787-01 2 179581848 179581848 G T TTN Missense_Mutation p.S8538Y 0.18 TCGA-66-2787-01 2 179590510 179590510 T C TTN Missense_Mutation p.T6847A 0.08 TCGA-66-2787-01 2 179598616 179598616 G T TTN Missense_Mutation p.P5167H 0.27 TCGA-66-2787-01 2 179616020 179616020 G T TTN Intron 0.17 TCGA-66-2787-01 2 179640358 179640358 G - TTN Frame_Shift_Del p.P2078Qfs*61 0.12 TCGA-66-2787-01 2 180815448 180815448 C A CWC22 Missense_Mutation p.R644L 0.37 deleterious(0) probably_damaging(0.988) TCGA-66-2787-01 2 182787078 182787078 C T SSFA2 Missense_Mutation p.P1205L 0.15 deleterious(0) benign(0.419) TCGA-66-2787-01 2 183699610 183699610 C A FRZB Missense_Mutation p.G315V 0.28 deleterious_low_confidence(0) benign(0.357) TCGA-66-2787-01 2 183989104 183989104 C A NUP35 5'UTR 0.23 TCGA-66-2787-01 2 196599666 196599666 G T SLC39A10 Silent p.G799G 0.30 TCGA-66-2787-01 2 196619071 196619071 A T DNAH7 Silent p.P3918P 0.25 TCGA-66-2787-01 2 197194300 197194300 T A HECW2 Silent p.S190S 0.20 TCGA-66-2787-01 2 198949214 198949214 A T PLCL1 Nonsense_Mutation p.K325* 0.23 TCGA-66-2787-01 2 207176006 207176006 A T ZDBF2 Nonsense_Mutation p.K2252* 0.38 TCGA-66-2787-01 2 214181983 214181983 G C SPAG16 Missense_Mutation p.V147L 0.30 tolerated(0.35) benign(0.001) TCGA-66-2787-01 2 27454372 27454372 C T CAD Missense_Mutation p.A775V 0.14 deleterious(0.02) possibly_damaging(0.838) TCGA-66-2787-01 2 27799968 27799968 A C C2orf16 Missense_Mutation p.K177Q 0.09 tolerated(0.06) probably_damaging(0.95) TCGA-66-2787-01 2 27876565 27876565 C T SUPT7L Missense_Mutation p.M344I 0.39 tolerated(0.24) benign(0.001) TCGA-66-2787-01 2 29404610 29404610 G A CLIP4 Missense_Mutation p.E657K 0.33 deleterious(0.04) probably_damaging(1) TCGA-66-2787-01 2 44078879 44078879 A G ABCG8 Missense_Mutation p.N160S 0.10 deleterious(0.04) benign(0.259) TCGA-66-2787-01 2 45616719 45616719 G T SRBD1 Missense_Mutation p.F906L 0.14 deleterious(0) probably_damaging(0.979) TCGA-66-2787-01 2 61546343 61546343 C A USP34 Missense_Mutation p.G1045C 0.28 deleterious(0) possibly_damaging(0.642) TCGA-66-2787-01 2 74593124 74593124 C T DCTN1 Missense_Mutation p.A928T 0.45 deleterious(0) probably_damaging(0.99) TCGA-66-2787-01 2 79363115 79363115 A G REG1P RNA 0.17 TCGA-66-2787-01 2 79384706 79384706 C T REG3A Missense_Mutation p.R151K 0.07 tolerated(0.31) benign(0.384) TCGA-66-2787-01 2 80096942 80096942 G T CTNNA2 Missense_Mutation p.V156L 0.26 tolerated(0.16) benign(0.21) TCGA-66-2787-01 2 80530054 80530054 G C LRRTM1 Silent p.P297P 0.21 TCGA-66-2787-01 2 86359468 86359468 G A PTCD3 Missense_Mutation p.A432T 0.21 deleterious(0) probably_damaging(0.946) TCGA-66-2787-01 2 89416871 89416871 A C IGKV1-17 Missense_Mutation p.F105V 0.29 tolerated(0.73) benign(0.012) TCGA-66-2787-01 2 90078209 90078209 G C IGKV3D-20 Missense_Mutation p.R82S 0.29 deleterious(0.01) possibly_damaging(0.889) TCGA-66-2787-01 2 90212042 90212042 C - IGKV3D-11 Frame_Shift_Del p.S46Vfs*8 0.30 TCGA-66-2787-01 3 109028117 109028117 G A DPPA2 Missense_Mutation p.P81L 0.12 tolerated(0.11) benign(0.108) TCGA-66-2787-01 3 111357003 111357003 G T CD96 Missense_Mutation p.V505F 0.19 tolerated(0.4) benign(0.002) TCGA-66-2787-01 3 112064011 112064011 G T CD200 Silent p.L124L 0.15 TCGA-66-2787-01 3 112546478 112546478 G T CD200R1L Missense_Mutation p.P56T 0.13 deleterious(0.02) benign(0.254) TCGA-66-2787-01 3 113135435 113135435 C A WDR52 Missense_Mutation p.G204W 0.24 deleterious(0) probably_damaging(0.999) TCGA-66-2787-01 3 119462960 119462960 C G MAATS1 Missense_Mutation p.R607G 0.21 deleterious(0) probably_damaging(0.999) TCGA-66-2787-01 3 119887051 119887051 G C GPR156 Missense_Mutation p.P425A 0.24 tolerated(0.08) possibly_damaging(0.459) TCGA-66-2787-01 3 121554135 121554135 G T EAF2 Translation_Start_Site p.M1? 0.12 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-66-2787-01 3 124462860 124462860 G C UMPS Missense_Mutation p.D458H 0.19 deleterious(0) benign(0.163) TCGA-66-2787-01 3 124826404 124826404 G C SLC12A8 Missense_Mutation p.S542R 0.15 tolerated(0.26) benign(0.002) TCGA-66-2787-01 3 126386112 126386112 G C NUP210P1 RNA 0.47 TCGA-66-2787-01 3 129221605 129221605 G T IFT122 Silent p.L860L 0.08 TCGA-66-2787-01 3 129289909 129289909 C A PLXND1 Missense_Mutation p.G1192W 0.15 deleterious(0.01) probably_damaging(0.979) TCGA-66-2787-01 3 130852747 130852747 T C NEK11 Silent p.Y198Y 0.48 TCGA-66-2787-01 3 133098855 133098855 C G TMEM108 Missense_Mutation p.I100M 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.548) TCGA-66-2787-01 3 134873074 134873074 C A EPHB1 Missense_Mutation p.P460T 0.11 tolerated(0.08) possibly_damaging(0.654) TCGA-66-2787-01 3 136016830 136016830 C G PCCB Missense_Mutation p.A287G 0.13 tolerated_low_confidence(0.09) possibly_damaging(0.904) TCGA-66-2787-01 3 137993288 137993288 C T ARMC8 Intron 0.14 TCGA-66-2787-01 3 141163969 141163969 C A ZBTB38 Missense_Mutation p.D913E 0.12 deleterious(0) probably_damaging(0.994) TCGA-66-2787-01 3 141164615 141164615 C T ZBTB38 Nonsense_Mutation p.Q1129* 0.07 TCGA-66-2787-01 3 142985708 142985708 G T SLC9A9 Missense_Mutation p.Q592K 0.16 tolerated(0.17) benign(0.05) TCGA-66-2787-01 3 1443184 1443184 G T CNTN6 Missense_Mutation p.E924D 0.28 tolerated(0.53) probably_damaging(0.984) TCGA-66-2787-01 3 150690325 150690325 A T CLRN1 Missense_Mutation p.F57L 0.11 deleterious(0) probably_damaging(0.999) TCGA-66-2787-01 3 151163652 151163652 C A IGSF10 Missense_Mutation p.A1373S 0.17 tolerated(0.57) benign(0.013) TCGA-66-2787-01 3 15512050 15512050 C A COLQ Missense_Mutation p.G237V 0.45 deleterious(0) unknown(0) TCGA-66-2787-01 3 157188180 157188180 T G VEPH1 Missense_Mutation p.N93H 0.41 deleterious(0.01) benign(0.049) TCGA-66-2787-01 3 159997010 159997010 C G IFT80 Missense_Mutation p.D603H 0.19 tolerated(0.05) benign(0.145) TCGA-66-2787-01 3 164766995 164766995 G T SI Nonsense_Mutation p.C545* 0.17 TCGA-66-2787-01 3 164906058 164906058 C G SLITRK3 Missense_Mutation p.G854A 0.16 tolerated_low_confidence(1) benign(0.003) TCGA-66-2787-01 3 164906748 164906748 G A SLITRK3 Missense_Mutation p.P624L 0.20 deleterious(0.03) benign(0.392) TCGA-66-2787-01 3 167000262 167000262 G T ZBBX Nonsense_Mutation p.S673* 0.18 TCGA-66-2787-01 3 173322231 173322231 G T NLGN1 5'UTR 0.14 TCGA-66-2787-01 3 179052110 179052110 A G ZNF639 Missense_Mutation p.K453R 0.20 tolerated(0.91) benign(0.002) TCGA-66-2787-01 3 182756857 182756857 T C MCCC1 Missense_Mutation p.Q445R 0.56 tolerated(0.3) benign(0.315) TCGA-66-2787-01 3 194062993 194062993 G A CPN2 Silent p.L147L 0.19 TCGA-66-2787-01 3 194080603 194080603 G C LRRC15 Silent p.G396G 0.19 TCGA-66-2787-01 3 196050764 196050764 A T TM4SF19 Missense_Mutation p.L185Q 0.13 deleterious(0.05) possibly_damaging(0.882) TCGA-66-2787-01 3 196675139 196675139 C A PIGZ Missense_Mutation p.R210L 0.19 tolerated(0.37) benign(0.038) TCGA-66-2787-01 3 197410253 197410253 C T KIAA0226 Silent p.K635K 0.21 TCGA-66-2787-01 3 3111872 3111872 G T IL5RA 3'UTR 0.31 TCGA-66-2787-01 3 38938418 38938418 C T SCN11A Nonsense_Mutation p.W774* 0.49 TCGA-66-2787-01 3 42703103 42703103 C T ZBTB47 Missense_Mutation p.H534Y 0.27 tolerated(0.05) unknown(0) TCGA-66-2787-01 3 46244987 46244987 C A CCR1 Missense_Mutation p.C273F 0.17 deleterious(0.01) probably_damaging(1) TCGA-66-2787-01 3 64601826 64601826 C A ADAMTS9 Missense_Mutation p.S945I 0.22 deleterious(0) probably_damaging(0.944) TCGA-66-2787-01 3 71739215 71739215 C G EIF4E3 Missense_Mutation p.E192Q 0.23 tolerated(0.3) benign(0.076) TCGA-66-2787-01 3 81719992 81719992 T G GBE1 Missense_Mutation p.L142F 0.25 deleterious(0.02) possibly_damaging(0.853) TCGA-66-2787-01 3 96706678 96706678 G T EPHA6 Missense_Mutation p.D319Y 0.10 deleterious(0) probably_damaging(1) TCGA-66-2787-01 4 119203058 119203058 G T PRSS12 3'UTR 0.33 TCGA-66-2787-01 4 126239869 126239869 G A FAT4 Missense_Mutation p.G768D 0.64 probably_damaging(1) TCGA-66-2787-01 4 126369935 126369935 C T FAT4 Silent p.T2588T 0.30 TCGA-66-2787-01 4 13603499 13603499 T C BOD1L1 Silent p.E1675E 0.17 TCGA-66-2787-01 4 147247142 147247142 C A SLC10A7 Missense_Mutation p.V148F 0.35 tolerated(0.65) benign(0.005) TCGA-66-2787-01 4 151153526 151153526 G T DCLK2 Missense_Mutation p.R463L 0.38 deleterious(0.01) benign(0.428) TCGA-66-2787-01 4 15937711 15937711 G C FGFBP1 Missense_Mutation p.S182C 0.18 deleterious(0.03) possibly_damaging(0.579) TCGA-66-2787-01 4 16504481 16504481 C A LDB2 Nonsense_Mutation p.G303* 0.13 TCGA-66-2787-01 4 187172721 187172721 G C KLKB1 Missense_Mutation p.V317L 0.09 tolerated(0.1) benign(0.009) TCGA-66-2787-01 4 20620527 20620527 G T SLIT2 Silent p.L1495L 0.34 TCGA-66-2787-01 4 2274976 2274976 C G ZFYVE28 Silent p.L749L 0.08 TCGA-66-2787-01 4 46388100 46388100 C A GABRA2 Nonsense_Mutation p.G60* 0.30 TCGA-66-2787-01 4 48230636 48230636 G A TEC 5'UTR 0.08 TCGA-66-2787-01 4 49052848 49052848 A C CWH43 Missense_Mutation p.K668T 0.16 tolerated(0.13) benign(0.038) TCGA-66-2787-01 4 52883611 52883611 C A LRRC66 Missense_Mutation p.D57Y 0.41 deleterious(0.01) possibly_damaging(0.772) TCGA-66-2787-01 4 55602887 55602887 G C KIT Missense_Mutation p.G866A 0.27 deleterious(0.01) probably_damaging(0.99) TCGA-66-2787-01 4 56768606 56768606 G T EXOC1 Missense_Mutation p.V812F 0.06 deleterious(0) probably_damaging(0.992) TCGA-66-2787-01 4 5699318 5699318 A G EVC2 Splice_Site p.X95_splice 0.43 TCGA-66-2787-01 4 57181635 57181635 A T KIAA1211 Missense_Mutation p.Q656L 0.21 deleterious(0.01) benign(0.145) TCGA-66-2787-01 4 6374278 6374278 C A PPP2R2C Missense_Mutation p.W199C 0.21 deleterious(0) probably_damaging(1) TCGA-66-2787-01 4 66189906 66189906 C T EPHA5 Missense_Mutation p.G1014S 0.40 tolerated(0.06) probably_damaging(0.998) TCGA-66-2787-01 4 68725388 68725388 C T TMPRSS11D Missense_Mutation p.R6H 0.29 tolerated(0.31) possibly_damaging(0.794) TCGA-66-2787-01 4 71469636 71469636 G T AMBN Missense_Mutation p.A266S 0.31 tolerated(0.48) benign(0.173) TCGA-66-2787-01 4 72332198 72332198 G A SLC4A4 Missense_Mutation p.G512E 0.36 deleterious(0) probably_damaging(0.999) TCGA-66-2787-01 4 90169902 90169902 T C GPRIN3 Missense_Mutation p.K454E 0.10 tolerated(0.08) benign(0.002) TCGA-66-2787-01 4 99960601 99960601 G A METAP1 Missense_Mutation p.M139I 0.23 tolerated(0.32) probably_damaging(0.988) TCGA-66-2787-01 5 108207163 108207163 G C FER Missense_Mutation p.D255H 0.35 deleterious(0.02) possibly_damaging(0.717) TCGA-66-2787-01 5 110461440 110461440 G A WDR36 Missense_Mutation p.D885N 0.21 tolerated(0.54) benign(0.005) TCGA-66-2787-01 5 113822787 113822787 T A KCNN2 Missense_Mutation p.L432Q 0.38 deleterious(0) probably_damaging(0.993) TCGA-66-2787-01 5 127702111 127702111 C A FBN2 Missense_Mutation p.G754V 0.37 tolerated(0.1) benign(0.06) TCGA-66-2787-01 5 128320941 128320941 C A SLC27A6 Silent p.T199T 0.42 TCGA-66-2787-01 5 132015524 132015524 A G IL4 Missense_Mutation p.K101R 0.30 tolerated(0.41) benign(0.106) TCGA-66-2787-01 5 135276949 135276949 C T FBXL21 RNA 0.37 TCGA-66-2787-01 5 135416216 135416216 A T VTRNA2-1 RNA 0.17 TCGA-66-2787-01 5 13735337 13735337 G T DNAH5 Nonsense_Mutation p.Y3888* 0.28 TCGA-66-2787-01 5 13864711 13864711 T A DNAH5 Missense_Mutation p.Q1464L 0.13 benign(0.227) TCGA-66-2787-01 5 139267090 139267090 C G NRG2 Missense_Mutation p.R236P 0.64 tolerated(0.49) benign(0.003) TCGA-66-2787-01 5 140176274 140176274 C A PCDHA2 Silent p.G575G 0.37 TCGA-66-2787-01 5 140180879 140180879 T A PCDHA3 Missense_Mutation p.Y33N 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-66-2787-01 5 140188675 140188675 C G PCDHA4 Missense_Mutation p.R635G 0.39 deleterious_low_confidence(0.02) benign(0.422) TCGA-66-2787-01 5 140263823 140263823 C A PCDHA13 Missense_Mutation p.P657H 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-66-2787-01 5 148427424 148427424 C A SH3TC2 Splice_Site p.X93_splice 0.33 TCGA-66-2787-01 5 149912589 149912589 A C NDST1 Missense_Mutation p.H364P 0.35 deleterious(0) possibly_damaging(0.87) TCGA-66-2787-01 5 154200021 154200021 C A FAXDC2 Missense_Mutation p.C286F 0.30 deleterious(0.01) probably_damaging(0.921) TCGA-66-2787-01 5 155756569 155756569 T G SGCD 5'UTR 0.40 TCGA-66-2787-01 5 160061389 160061389 C A ATP10B Missense_Mutation p.M451I 0.08 tolerated(0.32) benign(0.213) TCGA-66-2787-01 5 169461420 169461420 C A DOCK2 Missense_Mutation p.A1162E 0.39 tolerated(0.88) benign(0.001) TCGA-66-2787-01 5 180338406 180338406 G T BTNL8 Missense_Mutation p.Q155H 0.36 tolerated(0.13) benign(0.319) TCGA-66-2787-01 5 21975358 21975358 G A CDH12 Missense_Mutation p.P123L 0.19 deleterious(0.04) possibly_damaging(0.903) TCGA-66-2787-01 5 26881271 26881271 C A CDH9 Missense_Mutation p.G782W 0.19 deleterious(0) probably_damaging(0.984) TCGA-66-2787-01 5 35705881 35705881 C T SPEF2 Missense_Mutation p.T879M 0.19 tolerated(0.86) benign(0) TCGA-66-2787-01 5 5186325 5186325 T C ADAMTS16 Silent p.H308H 0.25 TCGA-66-2787-01 5 55110787 55110787 C A DDX4 Missense_Mutation p.P592T 0.28 tolerated(0.06) possibly_damaging(0.896) TCGA-66-2787-01 5 56184162 56184162 A G MAP3K1 Missense_Mutation p.N1456S 0.25 deleterious(0.03) probably_damaging(0.909) TCGA-66-2787-01 5 64905270 64905270 C T TRIM23 Missense_Mutation p.E282K 0.31 deleterious(0.01) possibly_damaging(0.696) TCGA-66-2787-01 5 65342183 65342183 C A ERBB2IP Silent p.T535T 0.34 TCGA-66-2787-01 5 7867883 7867883 C A FASTKD3 Missense_Mutation p.R105I 0.29 deleterious(0) benign(0.374) TCGA-66-2787-01 5 89989742 89989742 G C GPR98 Missense_Mutation p.S2390T 0.29 possibly_damaging(0.483) TCGA-66-2787-01 5 90368330 90368330 G A GPR98 Silent p.V6073V 0.36 TCGA-66-2787-01 5 98232003 98232003 T G CHD1 Missense_Mutation p.Q546P 0.28 deleterious(0) probably_damaging(0.996) TCGA-66-2787-01 6 107391211 107391211 T A BEND3 Missense_Mutation p.Q395L 0.16 tolerated(0.11) possibly_damaging(0.773) TCGA-66-2787-01 6 116288787 116288787 A T FRK Silent p.S242S 0.15 TCGA-66-2787-01 6 119514988 119514988 T A MAN1A1 Missense_Mutation p.D427V 0.17 deleterious(0.02) possibly_damaging(0.726) TCGA-66-2787-01 6 121577251 121577251 A G TBC1D32 Silent p.S638S 0.25 TCGA-66-2787-01 6 121768886 121768886 G C GJA1 Missense_Mutation p.C298S 0.27 tolerated(0.46) benign(0.012) TCGA-66-2787-01 6 123101603 123101603 T C FABP7 Missense_Mutation p.C81R 0.21 deleterious(0) possibly_damaging(0.8) TCGA-66-2787-01 6 123376952 123376952 T G CLVS2 Missense_Mutation p.I226R 0.31 deleterious(0) probably_damaging(0.972) TCGA-66-2787-01 6 127610970 127610970 A G ECHDC1 3'UTR 0.30 TCGA-66-2787-01 6 128150997 128150997 T A THEMIS Missense_Mutation p.R111S 0.27 tolerated(0.05) probably_damaging(0.963) TCGA-66-2787-01 6 129759879 129759879 T G LAMA2 Silent p.T2019T 0.15 TCGA-66-2787-01 6 130762800 130762800 A G TMEM200A Silent p.A411A 0.29 TCGA-66-2787-01 6 139609763 139609763 C A TXLNB Missense_Mutation p.A92S 0.35 tolerated(0.24) benign(0.055) TCGA-66-2787-01 6 146264293 146264293 A T SHPRH Missense_Mutation p.S742T 0.22 tolerated(0.06) probably_damaging(0.95) TCGA-66-2787-01 6 152644691 152644691 T C SYNE1 Missense_Mutation p.Q5280R 0.20 benign(0.004) TCGA-66-2787-01 6 160671686 160671686 T A SLC22A2 Silent p.A189A 0.42 TCGA-66-2787-01 6 166952269 166952269 C G RPS6KA2 Missense_Mutation p.E43Q 0.20 deleterious(0.04) benign(0.277) TCGA-66-2787-01 6 167590594 167590594 G T TCP10L2 Missense_Mutation p.W157L 0.14 tolerated(0.29) benign(0) TCGA-66-2787-01 6 167791471 167791471 C A TCP10 Missense_Mutation p.W130L 0.19 tolerated(0.29) benign(0) TCGA-66-2787-01 6 168352705 168352705 C G MLLT4 Missense_Mutation p.S1550R 0.23 deleterious_low_confidence(0) possibly_damaging(0.552) TCGA-66-2787-01 6 170627660 170627695 CCCTGAATCCAGGCGAGAAGTTCCCATGTGTTCAGA - FAM120B In_Frame_Del p.S397_E408del 0.17 TCGA-66-2787-01 6 18121939 18121939 C G NHLRC1 Missense_Mutation p.S300T 0.21 tolerated(0.34) benign(0) TCGA-66-2787-01 6 26104290 26104290 G T HIST1H4C Missense_Mutation p.A39S 0.19 deleterious(0.02) probably_damaging(0.959) TCGA-66-2787-01 6 26225436 26225436 C A HIST1H3E Silent p.R18R 0.26 TCGA-66-2787-01 6 27368915 27368915 A T ZNF391 Nonsense_Mutation p.K256* 0.28 TCGA-66-2787-01 6 29275320 29275320 C A OR14J1 Missense_Mutation p.P285Q 0.23 deleterious(0) probably_damaging(1) TCGA-66-2787-01 6 29638970 29638970 C G MOG Intron 0.25 TCGA-66-2787-01 6 38802366 38802366 G T DNAH8 Missense_Mutation p.M1221I 0.29 benign(0.206) TCGA-66-2787-01 6 39162006 39162006 G T KCNK5 Silent p.I191I 0.27 TCGA-66-2787-01 6 4032634 4032634 C T PRPF4B Missense_Mutation p.P295S 0.26 tolerated_low_confidence(0.07) probably_damaging(0.996) TCGA-66-2787-01 6 40399687 40399687 G C LRFN2 Missense_Mutation p.T389S 0.14 tolerated(0.67) benign(0.065) TCGA-66-2787-01 6 46656980 46656980 T A TDRD6 Missense_Mutation p.V372E 0.19 deleterious(0.05) probably_damaging(0.999) TCGA-66-2787-01 6 49816007 49816007 C A CRISP1 Missense_Mutation p.W67C 0.18 deleterious(0) probably_damaging(1) TCGA-66-2787-01 6 50011464 50011464 C G DEFB112 Missense_Mutation p.A56P 0.22 tolerated(0.22) benign(0.014) TCGA-66-2787-01 6 51907739 51907739 G C PKHD1 Silent p.A1005A 0.42 TCGA-66-2787-01 6 51907740 51907740 G T PKHD1 Missense_Mutation p.A1005D 0.42 deleterious(0) probably_damaging(1) TCGA-66-2787-01 6 56394534 56394534 T C DST Silent p.L3146L 0.29 TCGA-66-2787-01 6 6266881 6266881 A T F13A1 Missense_Mutation p.Y161N 0.36 deleterious(0.03) probably_damaging(1) TCGA-66-2787-01 6 69666600 69666600 G T BAI3 Missense_Mutation p.W475L 0.15 tolerated(0.52) possibly_damaging(0.741) TCGA-66-2787-01 6 75825592 75825592 A T COL12A1 Silent p.A2535A 0.16 TCGA-66-2787-01 6 87726039 87726039 G T HTR1E Silent p.L329L 0.20 TCGA-66-2787-01 6 88853983 88853983 C A CNR1 Missense_Mutation p.M337I 0.25 tolerated(0.05) probably_damaging(0.996) TCGA-66-2787-01 6 93969136 93969136 A T EPHA7 Silent p.A620A 0.13 TCGA-66-2787-01 7 100086350 100086350 C A NYAP1 Missense_Mutation p.P336T 0.56 deleterious(0) probably_damaging(0.999) TCGA-66-2787-01 7 100490928 100490928 G C ACHE Missense_Mutation p.A309G 0.50 deleterious(0.04) benign(0.016) TCGA-66-2787-01 7 11415333 11415333 C A THSD7A 3'UTR 0.22 TCGA-66-2787-01 7 122774567 122774567 G T SLC13A1 Missense_Mutation p.R277S 0.62 tolerated(0.13) benign(0.018) TCGA-66-2787-01 7 131817907 131817907 G A PLXNA4 Silent p.N1830N 0.33 TCGA-66-2787-01 7 138591710 138591710 C A KIAA1549 Nonsense_Mutation p.E1139* 0.45 TCGA-66-2787-01 7 141722156 141722156 G T MGAM Nonsense_Mutation p.G267* 0.46 TCGA-66-2787-01 7 142364538 142364538 C T TRBV24-1 Missense_Mutation p.P58L 0.57 tolerated(0.42) benign(0.107) TCGA-66-2787-01 7 142562440 142562440 A T EPHB6 Silent p.V294V 0.48 TCGA-66-2787-01 7 142609900 142609900 G T TRPV5 Missense_Mutation p.F512L 0.09 deleterious(0) probably_damaging(1) TCGA-66-2787-01 7 143956017 143956017 T A OR2A7 Missense_Mutation p.K235N 0.09 deleterious(0) probably_damaging(1) TCGA-66-2787-01 7 149478003 149478003 C T SSPO RNA 0.68 TCGA-66-2787-01 7 150846205 150846205 T C GBX1 Missense_Mutation p.D188G 0.22 deleterious(0) possibly_damaging(0.505) TCGA-66-2787-01 7 150883938 150883938 G T ASB10 Silent p.R94R 0.63 TCGA-66-2787-01 7 151851428 151851428 C A KMT2C Silent p.L4021L 0.28 TCGA-66-2787-01 7 21630856 21630856 G T DNAH11 Silent p.T776T 0.34 TCGA-66-2787-01 7 21775367 21775367 C A DNAH11 Missense_Mutation p.T2524K 0.34 probably_damaging(0.991) TCGA-66-2787-01 7 27142129 27142129 C G HOXA2 5'UTR 0.61 TCGA-66-2787-01 7 30915170 30915170 G T FAM188B Nonsense_Mutation p.E624* 0.37 TCGA-66-2787-01 7 37947058 37947058 C G SFRP4 3'UTR 0.42 TCGA-66-2787-01 7 39730117 39730117 G A RALA Missense_Mutation p.R84Q 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-66-2787-01 7 40899991 40899991 C T SUGCT Silent p.H443H 0.20 TCGA-66-2787-01 7 44189600 44189600 C A GCK Missense_Mutation p.G184W 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-66-2787-01 7 76033672 76033672 G C SRCRB4D Missense_Mutation p.P29A 0.12 tolerated_low_confidence(0.28) benign(0.001) TCGA-66-2787-01 7 81331913 81331913 T A HGF Missense_Mutation p.K724M 0.55 deleterious(0.03) possibly_damaging(0.686) TCGA-66-2787-01 7 89874839 89874839 C A C7orf63 Missense_Mutation p.T34K 0.48 tolerated(0.11) benign(0.135) TCGA-66-2787-01 7 90419888 90419888 G A CDK14 Silent p.K137K 0.40 TCGA-66-2787-01 7 94058503 94058503 G T COL1A2 Nonsense_Mutation p.E1239* 0.44 TCGA-66-2787-01 8 103284843 103284843 T C UBR5 Missense_Mutation p.Y2296C 0.31 deleterious(0) probably_damaging(0.973) TCGA-66-2787-01 8 105368528 105368528 G T DCSTAMP 3'UTR 0.25 TCGA-66-2787-01 8 113569084 113569084 C A CSMD3 Missense_Mutation p.C1381F 0.15 deleterious(0) probably_damaging(0.992) TCGA-66-2787-01 8 113697808 113697808 G C CSMD3 Missense_Mutation p.S770C 0.18 deleterious(0) probably_damaging(0.971) TCGA-66-2787-01 8 11403590 11403590 G T BLK Silent p.P51P 0.14 TCGA-66-2787-01 8 11406551 11406551 G A BLK Silent p.L96L 0.17 TCGA-66-2787-01 8 114290852 114290852 A G CSMD3 Silent p.V161V 0.36 TCGA-66-2787-01 8 120608089 120608089 T C ENPP2 Missense_Mutation p.K376E 0.07 tolerated(1) possibly_damaging(0.531) TCGA-66-2787-01 8 133856422 133856422 G A PHF20L1 Missense_Mutation p.V924I 0.16 tolerated(0.45) benign(0.001) TCGA-66-2787-01 8 134239682 134239682 A T WISP1 Missense_Mutation p.Q278L 0.50 deleterious(0) possibly_damaging(0.842) TCGA-66-2787-01 8 139180280 139180280 G A FAM135B Silent p.H372H 0.22 TCGA-66-2787-01 8 139263259 139263259 T A FAM135B Splice_Site p.X123_splice 0.15 TCGA-66-2787-01 8 144812675 144812675 C T FAM83H Silent p.E26E 0.16 TCGA-66-2787-01 8 145278049 145278049 C T MROH1 Silent p.A418A 0.38 TCGA-66-2787-01 8 17822100 17822100 C G PCM1 Missense_Mutation p.S893C 0.10 deleterious(0) probably_damaging(0.999) TCGA-66-2787-01 8 1851599 1851599 C A ARHGEF10 Missense_Mutation p.N601K 0.21 deleterious(0) probably_damaging(0.999) TCGA-66-2787-01 8 19363180 19363180 C A CSGALNACT1 Missense_Mutation p.G56W 0.25 tolerated(0.14) probably_damaging(0.966) TCGA-66-2787-01 8 19700393 19700393 G T INTS10 Missense_Mutation p.K558N 0.26 tolerated(0.18) benign(0.101) TCGA-66-2787-01 8 25258515 25258515 A T DOCK5 Missense_Mutation p.E1620V 0.11 deleterious(0.02) benign(0.244) TCGA-66-2787-01 8 2796240 2796240 C T CSMD1 Missense_Mutation p.G3521D 0.26 probably_damaging(1) TCGA-66-2787-01 8 2965277 2965277 C A CSMD1 Missense_Mutation p.Q2266H 0.13 benign(0.001) TCGA-66-2787-01 8 30700808 30700808 G C TEX15 Nonsense_Mutation p.S1909* 0.16 TCGA-66-2787-01 8 61693855 61693855 G T CHD7 Missense_Mutation p.K654N 0.25 benign(0.403) TCGA-66-2787-01 8 69688635 69688635 G T C8orf34 Missense_Mutation p.G469V 0.14 tolerated_low_confidence(0.08) possibly_damaging(0.806) TCGA-66-2787-01 8 77765818 77765818 G C ZFHX4 Missense_Mutation p.D2221H 0.22 possibly_damaging(0.846) TCGA-66-2787-01 8 87423938 87423938 C G WWP1 Missense_Mutation p.T299S 0.31 tolerated(0.69) benign(0.001) TCGA-66-2787-01 8 97247842 97247842 C G UQCRB 5'Flank 0.33 TCGA-66-2787-01 9 101518738 101518738 T A ANKS6 Missense_Mutation p.S764C 0.37 deleterious(0) probably_damaging(0.962) TCGA-66-2787-01 9 112918631 112918631 C G PALM2-AKAP2 Missense_Mutation p.P1010A 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-66-2787-01 9 116811242 116811242 C A ZNF618 Missense_Mutation p.H461N 0.14 deleterious(0.03) probably_damaging(0.997) TCGA-66-2787-01 9 117810681 117810681 C G TNC Silent p.L1570L 0.12 TCGA-66-2787-01 9 120176822 120176822 G T ASTN2 Missense_Mutation p.A132E 0.40 tolerated_low_confidence(0.05) unknown(0) TCGA-66-2787-01 9 123215786 123215786 C A CDK5RAP2 Missense_Mutation p.G914V 0.18 tolerated(0.16) benign(0.155) TCGA-66-2787-01 9 125613661 125613661 C A RC3H2 Nonsense_Mutation p.E1058* 0.30 TCGA-66-2787-01 9 15192619 15192619 C A TTC39B Missense_Mutation p.G300V 0.33 deleterious(0) probably_damaging(0.994) TCGA-66-2787-01 9 21974677 21974677 C G CDKN2A Missense_Mutation p.Q50H 0.46 deleterious(0) probably_damaging(1) TCGA-66-2787-01 9 27567113 27567113 C T C9orf72 Silent p.S2S 0.42 TCGA-66-2787-01 9 36170237 36170237 C A CCIN Silent p.T246T 0.26 TCGA-66-2787-01 9 3898798 3898798 G T GLIS3 Missense_Mutation p.T674K 0.12 deleterious(0.01) benign(0.142) TCGA-66-2787-01 9 73151786 73151786 A G TRPM3 Missense_Mutation p.Y1403H 0.41 tolerated_low_confidence(0.06) probably_damaging(0.988) TCGA-66-2787-01 9 73398950 73398950 C A TRPM3 Intron 0.30 TCGA-66-2787-01 9 77457212 77457212 G A TRPM6 Missense_Mutation p.S67F 0.26 tolerated(0.05) benign(0.281) TCGA-66-2787-01 9 79322427 79322427 G C PRUNE2 Missense_Mutation p.T1588S 0.27 tolerated(0.29) benign(0.015) TCGA-66-2787-01 9 79403320 79403320 C G PRUNE2 Intron 0.24 TCGA-66-2787-01 9 79441626 79441626 C G PRUNE2 Missense_Mutation p.M177I 0.10 deleterious(0.01) benign(0.238) TCGA-66-2787-01 9 79441638 79441638 A G PRUNE2 Silent p.L173L 0.08 TCGA-66-2787-01 9 96418814 96418814 C G PHF2 Missense_Mutation p.Q362E 0.32 deleterious(0.02) unknown(0) TCGA-66-2787-01 X 103219092 103219092 C G TMSB15B 5'UTR 0.31 TCGA-66-2787-01 X 111003210 111003210 G T ALG13 Missense_Mutation p.V1133L 0.32 tolerated(0.09) benign(0.001) TCGA-66-2787-01 X 115590127 115590127 C G SLC6A14 3'UTR 0.58 TCGA-66-2787-01 X 120008931 120008931 C A CT47B1 Missense_Mutation p.E198D 0.38 tolerated(0.08) unknown(0) TCGA-66-2787-01 X 129759346 129759346 C A ENOX2 Missense_Mutation p.G592V 0.40 deleterious(0) probably_damaging(1) TCGA-66-2787-01 X 141291581 141291581 C G MAGEC2 Missense_Mutation p.G65R 0.29 tolerated(0.22) probably_damaging(0.995) TCGA-66-2787-01 X 30261064 30261064 T C MAGEB4 Missense_Mutation p.L271P 0.49 deleterious(0) probably_damaging(0.998) TCGA-66-2787-01 X 30719001 30719001 A G GK Missense_Mutation p.Q271R 0.61 tolerated(0.3) benign(0.001) TCGA-66-2787-01 X 31089888 31089888 G T FTHL17 Missense_Mutation p.D61E 0.44 tolerated(0.26) benign(0.174) TCGA-66-2787-01 X 37663381 37663381 T G CYBB Silent p.P383P 0.52 TCGA-66-2787-01 X 41026799 41026799 C T USP9X Missense_Mutation p.T798M 0.55 deleterious(0) probably_damaging(0.993) TCGA-66-2787-01 X 65474970 65474970 T G HEPH Missense_Mutation p.V940G 0.73 deleterious(0) probably_damaging(0.999) TCGA-66-2787-01 X 73046973 73046973 T C XIST RNA 0.44 TCGA-66-2787-01 X 80532630 80532630 C A SH3BGRL Missense_Mutation p.L65M 0.40 deleterious(0.01) benign(0.199) TCGA-66-2787-01 X 91873599 91873599 C A PCDH11X Missense_Mutation p.P1235Q 0.50 deleterious_low_confidence(0) possibly_damaging(0.753) TCGA-66-2788-01 10 115973781 115973781 G T TDRD1 Missense_Mutation p.W707L 0.38 deleterious(0.01) benign(0.027) TCGA-66-2788-01 10 135095751 135095751 C A TUBGCP2 Silent p.R823R 0.48 TCGA-66-2788-01 10 30336572 30336572 C T KIAA1462 Missense_Mutation p.R57H 0.23 tolerated(0.09) possibly_damaging(0.548) TCGA-66-2788-01 10 31809073 31809073 C T ZEB1 Silent p.C271C 0.28 TCGA-66-2788-01 10 37431132 37431132 C T ANKRD30A Missense_Mutation p.S380F 0.28 tolerated(0.19) possibly_damaging(0.831) TCGA-66-2788-01 10 49431303 49431303 G C FRMPD2 Missense_Mutation p.F393L 0.20 deleterious(0) probably_damaging(0.999) TCGA-66-2788-01 10 50532080 50532080 C A C10orf71 Missense_Mutation p.P497H 0.36 deleterious(0.02) benign(0.252) TCGA-66-2788-01 10 73047494 73047494 G A UNC5B Silent p.Q291Q 0.33 TCGA-66-2788-01 10 89711960 89711961 TG A PTEN Frame_Shift_Del p.L193Hfs*6 0.28 TCGA-66-2788-01 11 104899950 104899950 C A CASP1 Nonsense_Mutation p.G303* 0.22 TCGA-66-2788-01 11 124252512 124252512 G C OR8B2 Missense_Mutation p.S243C 0.17 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-66-2788-01 11 19207795 19207795 A T CSRP3 Missense_Mutation p.Y128N 0.16 deleterious(0) probably_damaging(0.999) TCGA-66-2788-01 11 20676348 20676348 C A SLC6A5 Silent p.P776P 0.19 TCGA-66-2788-01 11 46893077 46893077 T C LRP4 Missense_Mutation p.Q1564R 0.17 deleterious(0.04) benign(0.005) TCGA-66-2788-01 11 4869932 4869932 G C OR51S1 Missense_Mutation p.F169L 0.22 tolerated(0.22) possibly_damaging(0.447) TCGA-66-2788-01 11 56143187 56143187 C A OR8U1 Missense_Mutation p.L30I 0.26 tolerated(0.58) benign(0.003) TCGA-66-2788-01 11 59828788 59828788 G A MS4A3 Missense_Mutation p.G52E 0.21 deleterious(0.02) probably_damaging(0.982) TCGA-66-2788-01 11 60059779 60059779 A T MS4A4A Silent p.G41G 0.21 TCGA-66-2788-01 11 60183397 60183397 A G MS4A14 Missense_Mutation p.D352G 0.15 tolerated(0.05) benign(0.132) TCGA-66-2788-01 11 64977857 64977857 G A CAPN1 Missense_Mutation p.E665K 0.15 deleterious(0.02) benign(0.176) TCGA-66-2788-01 11 7437270 7437270 C A SYT9 Intron 0.15 TCGA-66-2788-01 11 78380075 78380075 G T TENM4 Missense_Mutation p.L2439I 0.17 tolerated(0.62) benign(0.013) TCGA-66-2788-01 12 101555843 101555843 C G SLC5A8 Missense_Mutation p.M513I 0.27 tolerated(0.1) benign(0.017) TCGA-66-2788-01 12 11546519 11546519 G C PRB2 Missense_Mutation p.Q165E 0.09 tolerated(0.3) unknown(0) TCGA-66-2788-01 12 121442168 121442168 A C C12orf43 Missense_Mutation p.L193V 0.26 tolerated(0.23) possibly_damaging(0.562) TCGA-66-2788-01 12 15654796 15654796 A C PTPRO Missense_Mutation p.S302R 0.20 deleterious_low_confidence(0.03) benign(0.001) TCGA-66-2788-01 12 48535133 48535133 G C PFKM Missense_Mutation p.G532R 0.26 tolerated(0.05) probably_damaging(1) TCGA-66-2788-01 12 50186238 50186238 C G NCKAP5L Missense_Mutation p.R1261S 0.20 tolerated(0.29) benign(0.281) TCGA-66-2788-01 12 56397818 56397818 C T SUOX Silent p.F215F 0.19 TCGA-66-2788-01 12 56722284 56722284 G A PAN2 Missense_Mutation p.R142C 0.26 deleterious(0) probably_damaging(0.987) TCGA-66-2788-01 12 7053875 7053875 G A C12orf57 Intron 0.16 TCGA-66-2788-01 12 7527242 7527242 C T CD163L1 Missense_Mutation p.D1069N 0.25 deleterious(0) probably_damaging(0.942) TCGA-66-2788-01 12 9147764 9147764 G A KLRG1 Nonsense_Mutation p.W79* 0.11 TCGA-66-2788-01 12 94072576 94072576 T A CRADD Missense_Mutation p.L9H 0.31 deleterious(0) probably_damaging(1) TCGA-66-2788-01 12 99061383 99061383 C G APAF1 Missense_Mutation p.N485K 0.26 tolerated(0.16) benign(0.246) TCGA-66-2788-01 13 102029111 102029111 A - NALCN Frame_Shift_Del p.L195* 0.26 TCGA-66-2788-01 13 111099172 111099172 G T COL4A2 Nonsense_Mutation p.G347* 0.35 TCGA-66-2788-01 13 111099173 111099173 G C COL4A2 Missense_Mutation p.G347A 0.35 probably_damaging(0.999) TCGA-66-2788-01 13 20224398 20224398 C T MPHOSPH8 Missense_Mutation p.S525L 0.43 tolerated(0.12) benign(0.004) TCGA-66-2788-01 13 58299048 58299048 T A PCDH17 Missense_Mutation p.S1034T 0.36 tolerated_low_confidence(0.06) possibly_damaging(0.899) TCGA-66-2788-01 13 79219120 79219120 C A RNF219 Missense_Mutation p.V29F 0.40 deleterious(0) probably_damaging(1) TCGA-66-2788-01 13 98673325 98673325 G C IPO5 Missense_Mutation p.E1067Q 0.26 deleterious(0.03) probably_damaging(0.964) TCGA-66-2788-01 14 103406186 103406186 C G CDC42BPB Missense_Mutation p.E1564Q 0.35 deleterious(0.03) possibly_damaging(0.501) TCGA-66-2788-01 14 104570718 104570718 C A ASPG Silent p.P277P 0.18 TCGA-66-2788-01 14 22521260 22521260 T C TRAV21 Missense_Mutation p.L94S 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-66-2788-01 14 22952008 22952008 G A TRAJ53 Missense_Mutation p.S6N 0.38 unknown(0) TCGA-66-2788-01 14 24676618 24676618 A T TSSK4 Missense_Mutation p.H246L 0.32 tolerated(0.43) benign(0.127) TCGA-66-2788-01 14 47504430 47504430 G A MDGA2 Nonsense_Mutation p.Q535* 0.19 TCGA-66-2788-01 14 58563647 58563647 C G C14orf37 Missense_Mutation p.E628D 0.31 tolerated(0.05) benign(0.388) TCGA-66-2788-01 14 64443309 64443309 A T SYNE2 Missense_Mutation p.Y386F 0.35 benign(0.094) TCGA-66-2788-01 14 70713669 70713669 G C ADAM21P1 RNA 0.18 TCGA-66-2788-01 14 72138134 72138134 G T SIPA1L1 Nonsense_Mutation p.E852* 0.32 TCGA-66-2788-01 14 72976929 72976929 G A RGS6 Missense_Mutation p.V345M 0.35 deleterious(0.05) benign(0.086) TCGA-66-2788-01 14 88652109 88652109 T C KCNK10 Missense_Mutation p.K468E 0.13 deleterious_low_confidence(0) benign(0.342) TCGA-66-2788-01 14 93727992 93727992 A G BTBD7 Missense_Mutation p.I468T 0.08 deleterious(0.01) benign(0.081) TCGA-66-2788-01 14 93761256 93761256 T C BTBD7 Missense_Mutation p.Y37C 0.28 deleterious(0.01) benign(0.387) TCGA-66-2788-01 15 20488782 20488782 G C CHEK2P2 RNA 0.06 TCGA-66-2788-01 15 23689317 23689317 C A GOLGA6L2 Nonsense_Mutation p.E96* 0.35 TCGA-66-2788-01 15 23811224 23811224 A T MKRN3 Missense_Mutation p.I99F 0.14 deleterious(0) possibly_damaging(0.462) TCGA-66-2788-01 15 25451290 25451290 C T SNORD115-22 5'Flank 0.25 TCGA-66-2788-01 15 26026288 26026288 G T ATP10A Missense_Mutation p.P178T 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-66-2788-01 15 26026289 26026289 G T ATP10A Missense_Mutation p.F177L 0.14 tolerated(0.06) benign(0) TCGA-66-2788-01 15 32928116 32928116 G T ARHGAP11A Missense_Mutation p.G495C 0.33 deleterious(0) probably_damaging(0.995) TCGA-66-2788-01 15 40993374 40993374 G T RAD51 Missense_Mutation p.S67I 0.16 deleterious(0) possibly_damaging(0.885) TCGA-66-2788-01 15 42693865 42693865 C T CAPN3 Missense_Mutation p.R461C 0.25 deleterious(0) probably_damaging(0.992) TCGA-66-2788-01 15 45427450 45427450 C T DUOX1 Silent p.D152D 0.17 TCGA-66-2788-01 15 49031141 49031141 C T CEP152 Missense_Mutation p.D1480N 0.11 tolerated(0.11) benign(0.353) TCGA-66-2788-01 15 56680704 56680704 C A TEX9 Missense_Mutation p.H100N 0.10 tolerated(0.3) benign(0.222) TCGA-66-2788-01 15 77769937 77769937 C T HMG20A Missense_Mutation p.P219L 0.17 deleterious(0) probably_damaging(0.988) TCGA-66-2788-01 16 20322426 20322426 T A GP2 3'UTR 0.38 TCGA-66-2788-01 16 24920378 24920378 C A SLC5A11 Silent p.S537S 0.23 TCGA-66-2788-01 16 28967563 28967563 G T NFATC2IP Missense_Mutation p.V251F 0.32 deleterious(0) possibly_damaging(0.718) TCGA-66-2788-01 16 31501374 31501374 A T C16orf58 3'UTR 0.18 TCGA-66-2788-01 16 58043878 58043878 C T USB1 Missense_Mutation p.P104L 0.31 tolerated(0.38) benign(0.063) TCGA-66-2788-01 16 67233057 67233057 G A ELMO3 5'UTR 0.30 TCGA-66-2788-01 16 71488054 71488054 C A ZNF23 5'UTR 0.22 TCGA-66-2788-01 16 72992122 72992122 C T ZFHX3 Silent p.E641E 0.26 TCGA-66-2788-01 16 780560 780560 C T NARFL Missense_Mutation p.E430K 0.13 tolerated(0.51) benign(0.013) TCGA-66-2788-01 16 78458814 78458814 G - WWOX Frame_Shift_Del p.W218* 0.18 TCGA-66-2788-01 16 88722778 88722778 C T MVD Intron 0.35 TCGA-66-2788-01 16 90001435 90001435 G T TUBB3 Silent p.L192L 0.32 TCGA-66-2788-01 16 9857679 9857679 C T GRIN2A Missense_Mutation p.R1241Q 0.11 tolerated(0.25) possibly_damaging(0.679) TCGA-66-2788-01 17 56540167 56540167 T G HSF5 Missense_Mutation p.E506D 0.11 tolerated(0.05) benign(0.04) TCGA-66-2788-01 17 66417912 66417912 C A WIPI1 3'UTR 0.21 TCGA-66-2788-01 17 7579311 7579311 C A TP53 Splice_Site p.X125_splice 0.20 TCGA-66-2788-01 18 19031010 19031010 G C GREB1L Missense_Mutation p.E583Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-66-2788-01 18 28934971 28934971 A T DSG1 Missense_Mutation p.S938C 0.38 tolerated(0.14) possibly_damaging(0.838) TCGA-66-2788-01 18 48573403 48573403 A T SMAD4 5'UTR 0.33 TCGA-66-2788-01 18 50976931 50976931 C A DCC Missense_Mutation p.N1097K 0.31 tolerated(0.12) possibly_damaging(0.696) TCGA-66-2788-01 18 59203723 59203723 C A CDH20 Intron 0.34 TCGA-66-2788-01 19 14736383 14736383 C G EMR3 Missense_Mutation p.R614T 0.14 deleterious(0.04) benign(0.013) TCGA-66-2788-01 19 32902349 32902349 G A DPY19L3 Intron 0.14 TCGA-66-2788-01 19 42213940 42213940 G A CEA Missense_Mutation p.G136S 0.18 deleterious(0.02) possibly_damaging(0.713) TCGA-66-2788-01 19 44778096 44778096 G T ZNF233 Missense_Mutation p.W428L 0.17 tolerated(0.08) benign(0.223) TCGA-66-2788-01 19 49838976 49838976 C A CD37 Silent p.L25L 0.21 TCGA-66-2788-01 19 50247496 50247496 G C TSKS Silent p.R451R 0.18 TCGA-66-2788-01 19 50357725 50357725 C T PTOV1 Silent p.L78L 0.09 TCGA-66-2788-01 19 52568795 52568795 G A ZNF841 Silent p.L780L 0.10 TCGA-66-2788-01 19 53612438 53612438 A T ZNF415 Missense_Mutation p.L287H 0.10 deleterious(0.01) probably_damaging(0.979) TCGA-66-2788-01 19 53884192 53884192 G T ZNF525 Missense_Mutation p.M120I 0.24 tolerated(0.1) benign(0.015) TCGA-66-2788-01 19 54758617 54758617 G T LILRB5 Silent p.P412P 0.14 TCGA-66-2788-01 19 55597214 55597214 G A EPS8L1 Missense_Mutation p.R464Q 0.15 tolerated(1) benign(0) TCGA-66-2788-01 19 56953294 56953294 G A ZNF667 Missense_Mutation p.P357L 0.19 deleterious(0.04) benign(0.003) TCGA-66-2788-01 19 57746259 57746259 A G AURKC Missense_Mutation p.T198A 0.11 deleterious(0) possibly_damaging(0.804) TCGA-66-2788-01 19 6751103 6751103 G C TRIP10 Missense_Mutation p.E507Q 0.29 deleterious(0) probably_damaging(0.995) TCGA-66-2788-01 19 8971706 8971706 T A MUC16 Missense_Mutation p.T14296S 0.41 possibly_damaging(0.706) TCGA-66-2788-01 1 104116399 104116399 G T AMY2B Missense_Mutation p.A195S 0.14 tolerated(0.11) possibly_damaging(0.469) TCGA-66-2788-01 1 11077007 11077007 A C TARDBP Silent p.T115T 0.16 TCGA-66-2788-01 1 11307700 11307700 G A MTOR Nonsense_Mutation p.R403* 0.25 TCGA-66-2788-01 1 12837350 12837350 G T PRAMEF12 Missense_Mutation p.D354Y 0.21 tolerated(0.14) probably_damaging(0.996) TCGA-66-2788-01 1 144882752 144882752 G A PDE4DIP Silent p.T1089T 0.11 TCGA-66-2788-01 1 145549315 145549315 C A ANKRD35 5'UTR 0.17 TCGA-66-2788-01 1 152777405 152777405 G C LCE1C 3'UTR 0.25 TCGA-66-2788-01 1 152785226 152785226 G T LCE1B Missense_Mutation p.G102C 0.29 deleterious_low_confidence(0) unknown(0) TCGA-66-2788-01 1 153536362 153536362 G A S100A2 Intron 0.29 TCGA-66-2788-01 1 153604033 153604033 G A S100A1 Intron 0.23 TCGA-66-2788-01 1 156814587 156814587 T C INSRR Missense_Mutation p.K829R 0.20 tolerated(0.23) benign(0.006) TCGA-66-2788-01 1 157514242 157514242 C G FCRL5 Missense_Mutation p.E218D 0.19 deleterious(0.02) possibly_damaging(0.484) TCGA-66-2788-01 1 157514827 157514827 G T FCRL5 Missense_Mutation p.S118Y 0.22 tolerated(0.06) benign(0.066) TCGA-66-2788-01 1 158262495 158262495 G T CD1C Missense_Mutation p.M240I 0.12 deleterious(0.01) probably_damaging(0.944) TCGA-66-2788-01 1 158299801 158299801 C T CD1B Missense_Mutation p.V150M 0.20 tolerated(0.15) benign(0.154) TCGA-66-2788-01 1 158651411 158651411 A G SPTA1 Missense_Mutation p.L146P 0.20 tolerated(0.11) probably_damaging(0.99) TCGA-66-2788-01 1 158815386 158815386 A C MNDA Missense_Mutation p.T194P 0.23 tolerated(0.49) benign(0.001) TCGA-66-2788-01 1 160098516 160098516 G T ATP1A2 Silent p.T364T 0.18 TCGA-66-2788-01 1 173754391 173754391 G A KLHL20 3'UTR 0.11 TCGA-66-2788-01 1 17531664 17531664 G A PADI1 5'UTR 0.19 TCGA-66-2788-01 1 175325455 175325455 G C TNR Missense_Mutation p.L1040V 0.18 tolerated(0.32) benign(0.072) TCGA-66-2788-01 1 175372396 175372396 C A TNR Missense_Mutation p.G286C 0.23 deleterious(0) probably_damaging(0.99) TCGA-66-2788-01 1 180044231 180044231 G C CEP350 Missense_Mutation p.R1881P 0.25 probably_damaging(1) TCGA-66-2788-01 1 197316598 197316598 A C CRB1 Missense_Mutation p.H326P 0.22 tolerated(0.05) possibly_damaging(0.808) TCGA-66-2788-01 1 204951142 204951142 G T NFASC Nonsense_Mutation p.E822* 0.26 TCGA-66-2788-01 1 233134126 233134126 C G PCNXL2 Missense_Mutation p.G1888R 0.23 tolerated(0.19) benign(0.022) TCGA-66-2788-01 1 237604759 237604759 G A RYR2 Silent p.V382V 0.15 TCGA-66-2788-01 1 237778056 237778056 A T RYR2 Missense_Mutation p.Q1876H 0.15 benign(0.024) TCGA-66-2788-01 1 237817703 237817703 C T RYR2 Silent p.L2652L 0.17 TCGA-66-2788-01 1 248004691 248004691 C A OR11L1 Missense_Mutation p.G170W 0.18 deleterious(0) probably_damaging(0.999) TCGA-66-2788-01 1 248201806 248201806 G C OR2L2 Missense_Mutation p.K79N 0.17 deleterious(0.03) benign(0.102) TCGA-66-2788-01 1 249106437 249106437 G A SH3BP5L Missense_Mutation p.H282Y 0.20 tolerated(0.06) benign(0.066) TCGA-66-2788-01 1 33059073 33059073 A G ZBTB8A Missense_Mutation p.N181D 0.23 benign(0.013) TCGA-66-2788-01 1 75609574 75609574 G C LHX8 Missense_Mutation p.V219L 0.19 tolerated(0.42) benign(0.003) TCGA-66-2788-01 1 78031388 78031388 G A ZZZ3 Silent p.Y883Y 0.25 TCGA-66-2788-01 1 79002271 79002271 G T PTGFR Missense_Mutation p.V327F 0.17 tolerated(0.71) benign(0.004) TCGA-66-2788-01 20 18794684 18794684 C A SCP2D1 Silent p.T75T 0.21 TCGA-66-2788-01 20 1961247 1961247 G A PDYN Missense_Mutation p.L163F 0.23 tolerated(0.7) benign(0) TCGA-66-2788-01 20 20486081 20486081 C A RALGAPA2 Missense_Mutation p.D1676Y 0.33 deleterious(0) probably_damaging(0.969) TCGA-66-2788-01 20 21143751 21143751 A T RP4-777D9.2 Intron 0.19 TCGA-66-2788-01 20 2575614 2575614 G A TMC2 Splice_Site p.X359_splice 0.19 TCGA-66-2788-01 20 31659950 31659950 C A BPIFB3 Missense_Mutation p.A434E 0.21 tolerated(0.06) possibly_damaging(0.713) TCGA-66-2788-01 20 56139260 56139260 T C PCK1 Missense_Mutation p.F333L 0.17 deleterious(0) probably_damaging(0.996) TCGA-66-2788-01 20 56139263 56139263 G T PCK1 Missense_Mutation p.G334C 0.20 deleterious(0) probably_damaging(1) TCGA-66-2788-01 21 32513671 32513671 C T TIAM1 Silent p.A1209A 0.10 TCGA-66-2788-01 21 44589369 44589369 C T CRYAA Missense_Mutation p.R54C 0.39 deleterious(0.01) probably_damaging(0.986) TCGA-66-2788-01 22 20132833 20132833 C - ZDHHC8 Intron 0.26 TCGA-66-2788-01 22 22039088 22039088 A T PPIL2 Silent p.T200T 0.16 TCGA-66-2788-01 22 26422777 26422777 C T MYO18B Silent p.P2279P 0.29 TCGA-66-2788-01 22 31924738 31924738 C G SFI1 Missense_Mutation p.S52C 0.16 deleterious(0.04) possibly_damaging(0.878) TCGA-66-2788-01 22 41223120 41223120 C G ST13 Missense_Mutation p.E321Q 0.10 deleterious(0.03) benign(0.419) TCGA-66-2788-01 22 42042926 42042926 T C XRCC6 Missense_Mutation p.I267T 0.18 tolerated(0.09) benign(0.232) TCGA-66-2788-01 22 50356677 50356677 G T PIM3 Missense_Mutation p.G295W 0.33 deleterious(0.01) benign(0.325) TCGA-66-2788-01 2 109276214 109276214 C T LIMS1 Silent p.F112F 0.13 TCGA-66-2788-01 2 11696853 11696853 C T GREB1 Missense_Mutation p.S38F 0.11 deleterious(0) probably_damaging(0.998) TCGA-66-2788-01 2 128522490 128522490 C A WDR33 Missense_Mutation p.D180Y 0.15 deleterious(0) unknown(0) TCGA-66-2788-01 2 144194488 144194488 G T ARHGAP15 Missense_Mutation p.D194Y 0.20 deleterious(0) benign(0.267) TCGA-66-2788-01 2 152732997 152732997 A G CACNB4 Missense_Mutation p.L155P 0.21 deleterious(0.01) possibly_damaging(0.83) TCGA-66-2788-01 2 1544431 1544431 G A TPO Missense_Mutation p.R895K 0.20 tolerated_low_confidence(0.2) benign(0.019) TCGA-66-2788-01 2 167330361 167330361 C T SCN7A Missense_Mutation p.D131N 0.22 tolerated(1) possibly_damaging(0.493) TCGA-66-2788-01 2 179616205 179616205 G A TTN Intron 0.19 TCGA-66-2788-01 2 206480475 206480475 G C PARD3B Missense_Mutation p.D1124H 0.18 deleterious(0) probably_damaging(0.999) TCGA-66-2788-01 2 213886856 213886856 T A IKZF2 Splice_Site p.X192_splice 0.19 TCGA-66-2788-01 2 216190789 216190789 G C ATIC Silent p.V153V 0.12 TCGA-66-2788-01 2 225266389 225266389 C G FAM124B Missense_Mutation p.D33H 0.26 tolerated(0.06) benign(0.056) TCGA-66-2788-01 2 231742844 231742844 G T ITM2C 3'UTR 0.14 TCGA-66-2788-01 2 234628211 234628211 G T UGT1A4 Missense_Mutation p.V249F 0.20 tolerated(0.46) benign(0.001) TCGA-66-2788-01 2 240968955 240968955 T A OR6B2 Nonsense_Mutation p.K298* 0.13 TCGA-66-2788-01 2 242039030 242039030 C G MTERFD2 Missense_Mutation p.D101H 0.18 deleterious(0.01) possibly_damaging(0.617) TCGA-66-2788-01 2 242054777 242054777 C A PASK Nonsense_Mutation p.E1042* 0.13 TCGA-66-2788-01 2 38975742 38975742 C T SRSF7 Missense_Mutation p.R147H 0.15 deleterious(0.02) unknown(0) TCGA-66-2788-01 2 63486509 63486509 C A WDPCP Missense_Mutation p.L616F 0.19 deleterious(0.05) benign(0.129) TCGA-66-2788-01 2 74043036 74043036 C T C2orf78 Silent p.I562I 0.18 TCGA-66-2788-01 2 79365158 79365158 C A REG1P RNA 0.23 TCGA-66-2788-01 2 87017523 87017523 C A CD8A Missense_Mutation p.G111C 0.19 deleterious(0) probably_damaging(1) TCGA-66-2788-01 3 120977942 120977942 A G STXBP5L Missense_Mutation p.I629V 0.27 tolerated(0.34) benign(0.003) TCGA-66-2788-01 3 130442333 130442333 G C PIK3R4 Missense_Mutation p.L636V 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-66-2788-01 3 133692622 133692622 C A SLCO2A1 Silent p.R94R 0.17 TCGA-66-2788-01 3 133692623 133692623 C A SLCO2A1 Missense_Mutation p.R94L 0.18 deleterious(0) probably_damaging(0.922) TCGA-66-2788-01 3 164712183 164712183 G T SI Missense_Mutation p.P1568H 0.17 deleterious(0) probably_damaging(1) TCGA-66-2788-01 3 170857278 170857278 T C TNIK Missense_Mutation p.H467R 0.18 tolerated(0.23) unknown(0) TCGA-66-2788-01 3 183685506 183685506 G C ABCC5 Missense_Mutation p.L604V 0.09 deleterious(0.04) possibly_damaging(0.497) TCGA-66-2788-01 3 38835434 38835434 T C SCN10A Missense_Mutation p.E23G 0.23 deleterious(0.02) benign(0.146) TCGA-66-2788-01 3 39184890 39184890 C T CSRNP1 Missense_Mutation p.G476S 0.20 tolerated(0.29) benign(0.023) TCGA-66-2788-01 3 48506925 48506925 T C ATRIP Missense_Mutation p.V783A 0.12 tolerated(0.6) benign(0.001) TCGA-66-2788-01 3 49548205 49548205 G T DAG1 Missense_Mutation p.V80L 0.28 tolerated(1) benign(0.001) TCGA-66-2788-01 4 134084376 134084376 G T PCDH10 Missense_Mutation p.E1014D 0.18 tolerated(0.1) benign(0.008) TCGA-66-2788-01 4 144109067 144109067 T C USP38 Silent p.T257T 0.16 TCGA-66-2788-01 4 146770699 146770699 C A ZNF827 Nonsense_Mutation p.E666* 0.21 TCGA-66-2788-01 4 154548808 154548808 T A KIAA0922 Silent p.P1392P 0.18 TCGA-66-2788-01 4 183959074 183959074 G T FAM92A1P2 RNA 0.17 TCGA-66-2788-01 4 187178488 187178488 G A KLKB1 Missense_Mutation p.G565D 0.13 deleterious(0.01) possibly_damaging(0.687) TCGA-66-2788-01 4 20533637 20533637 G T SLIT2 Missense_Mutation p.L548F 0.15 deleterious(0) probably_damaging(0.998) TCGA-66-2788-01 4 22444340 22444340 C T GPR125 Missense_Mutation p.E285K 0.15 tolerated(0.26) benign(0.217) TCGA-66-2788-01 4 41016138 41016138 C A APBB2 Silent p.L99L 0.16 TCGA-66-2788-01 4 42145770 42145770 A G BEND4 Silent p.S243S 0.13 TCGA-66-2788-01 4 46067427 46067427 G T GABRG1 Missense_Mutation p.R166S 0.16 deleterious(0) benign(0.369) TCGA-66-2788-01 4 69682026 69682026 T C UGT2B10 Missense_Mutation p.S97P 0.19 tolerated(0.17) benign(0.001) TCGA-66-2788-01 4 71702001 71702001 G C GRSF1 Missense_Mutation p.P130A 0.13 tolerated(0.07) benign(0.007) TCGA-66-2788-01 4 82065400 82065400 T G PRKG2 Missense_Mutation p.E413D 0.16 tolerated(0.17) benign(0.367) TCGA-66-2788-01 4 85414579 85414579 C A NKX6-1 Missense_Mutation p.D323Y 0.13 deleterious(0) unknown(0) TCGA-66-2788-01 4 94693265 94693265 T A GRID2 Silent p.R880R 0.19 TCGA-66-2788-01 4 9998458 9998458 G A SLC2A9 Silent p.I119I 0.16 TCGA-66-2788-01 5 148745559 148745559 C G PCYOX1L Silent p.L175L 0.27 TCGA-66-2788-01 5 16451871 16451871 T G ZNF622 Silent p.R443R 0.31 TCGA-66-2788-01 5 169474568 169474568 G C DOCK2 Missense_Mutation p.D1341H 0.23 deleterious(0) probably_damaging(0.966) TCGA-66-2788-01 5 171305017 171305017 C A FBXW11 Silent p.V302V 0.29 TCGA-66-2788-01 5 33982512 33982512 T C SLC45A2 Missense_Mutation p.I131V 0.19 tolerated(0.95) benign(0.013) TCGA-66-2788-01 6 105259227 105259227 C A HACE1 Missense_Mutation p.R192S 0.22 deleterious(0.01) possibly_damaging(0.754) TCGA-66-2788-01 6 109867265 109867265 C T AK9 Silent p.Q1010Q 0.12 TCGA-66-2788-01 6 117589543 117589544 GA T VGLL2 Frame_Shift_Del p.D94Sfs*14 0.10 TCGA-66-2788-01 6 118791756 118791756 C T CEP85L Missense_Mutation p.E659K 0.29 tolerated(0.14) benign(0.034) TCGA-66-2788-01 6 118887127 118887127 T C CEP85L Silent p.Q198Q 0.19 TCGA-66-2788-01 6 13053641 13053641 G A PHACTR1 Missense_Mutation p.V99I 0.30 tolerated(0.08) benign(0.208) TCGA-66-2788-01 6 138202481 138202481 G C TNFAIP3 3'UTR 0.20 TCGA-66-2788-01 6 165842174 165842174 G A PDE10A Missense_Mutation p.A276V 0.26 deleterious(0.02) probably_damaging(0.99) TCGA-66-2788-01 6 168311987 168311987 A G MLLT4 Missense_Mutation p.I619V 0.36 tolerated(0.78) benign(0.045) TCGA-66-2788-01 6 26385438 26385438 G A BTN2A2 Missense_Mutation p.R97Q 0.24 tolerated(0.28) benign(0.408) TCGA-66-2788-01 6 27115008 27115008 T G HIST1H2AH Missense_Mutation p.L34R 0.17 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-66-2788-01 6 28268508 28268508 G T PGBD1 Missense_Mutation p.A293S 0.09 tolerated_low_confidence(0.23) benign(0.039) TCGA-66-2788-01 6 29012694 29012694 C A OR2W1 Nonsense_Mutation p.G87* 0.14 TCGA-66-2788-01 6 32261379 32261379 C T C6orf10 Silent p.G357G 0.29 TCGA-66-2788-01 6 37420895 37420895 C G CMTR1 Missense_Mutation p.R228G 0.16 deleterious(0.05) possibly_damaging(0.758) TCGA-66-2788-01 6 49459937 49459937 G T CENPQ Missense_Mutation p.K252N 0.19 deleterious(0.01) probably_damaging(0.971) TCGA-66-2788-01 6 70909429 70909429 C G COL19A1 Missense_Mutation p.P1071R 0.42 tolerated(0.11) probably_damaging(0.999) TCGA-66-2788-01 6 84910599 84910599 G C KIAA1009 Missense_Mutation p.S248C 0.15 deleterious(0) probably_damaging(0.999) TCGA-66-2788-01 7 100549773 100549773 C G MUC3A Silent p.T118T 0.13 TCGA-66-2788-01 7 100686315 100686315 G A MUC17 Missense_Mutation p.S3873N 0.26 benign(0.01) TCGA-66-2788-01 7 101847741 101847741 A T CUX1 Missense_Mutation p.Q1004L 0.30 tolerated(0.06) unknown(0) TCGA-66-2788-01 7 122047684 122047684 C A CADPS2 Missense_Mutation p.D886Y 0.31 deleterious(0) probably_damaging(0.947) TCGA-66-2788-01 7 136700549 136700549 G T CHRM2 Missense_Mutation p.G313C 0.37 tolerated(0.08) possibly_damaging(0.684) TCGA-66-2788-01 7 155099999 155099999 T G INSIG1 3'UTR 0.23 TCGA-66-2788-01 7 158705762 158705762 G T WDR60 Silent p.P559P 0.32 TCGA-66-2788-01 7 21744181 21744181 G C DNAH11 Missense_Mutation p.E2142Q 0.30 probably_damaging(0.999) TCGA-66-2788-01 7 2269698 2269698 C A MAD1L1 Missense_Mutation p.R24L 0.42 deleterious(0.01) possibly_damaging(0.73) TCGA-66-2788-01 7 50057903 50057903 A T ZPBP Missense_Mutation p.L239Q 0.15 deleterious(0.01) benign(0.393) TCGA-66-2788-01 7 88963726 88963726 C A ZNF804B Missense_Mutation p.P477Q 0.35 deleterious(0) probably_damaging(1) TCGA-66-2788-01 8 103848592 103848592 T C AZIN1 Missense_Mutation p.D159G 0.22 tolerated(0.09) benign(0.007) TCGA-66-2788-01 8 3224705 3224705 C T CSMD1 Silent p.E988E 0.09 TCGA-66-2788-01 8 41554238 41554238 C T ANK1 Silent p.E938E 0.37 TCGA-66-2788-01 8 61654299 61654299 C T CHD7 Missense_Mutation p.S103L 0.36 benign(0.32) TCGA-66-2788-01 8 86050585 86050585 G C LRRCC1 Silent p.R905R 0.25 TCGA-66-2788-01 8 86572517 86572517 G A REXO1L1P 3'UTR 0.09 TCGA-66-2788-01 9 107267037 107267037 C A OR13F1 Missense_Mutation p.P165Q 0.31 tolerated(1) benign(0.002) TCGA-66-2788-01 9 132565604 132565604 C T TOR1B Missense_Mutation p.S38L 0.44 deleterious(0.05) benign(0.007) TCGA-66-2788-01 9 5300281 5300281 G C RLN2 Silent p.L125L 0.20 TCGA-66-2788-01 9 69420344 69420344 G C ANKRD20A4 Missense_Mutation p.A412P 0.11 tolerated(0.25) benign(0.116) TCGA-66-2788-01 X 11782023 11782026 CTTC - MSL3 Frame_Shift_Del p.L292Qfs*23 0.37 TCGA-66-2788-01 X 13645160 13645160 T A EGFL6 Nonsense_Mutation p.L440* 0.55 TCGA-66-2788-01 X 148797503 148797503 C A MAGEA11 Missense_Mutation p.H119Q 0.28 tolerated(0.32) benign(0.034) TCGA-66-2788-01 X 2161142 2161142 C A DHRSX Silent p.V242V 0.20 TCGA-66-2788-01 X 44383470 44383470 C T FUNDC1 Missense_Mutation p.G148S 0.30 deleterious(0) unknown(0) TCGA-66-2788-01 X 65423336 65423336 T C HEPH Silent p.Y790Y 0.32 TCGA-66-2788-01 X 73045917 73045917 A T XIST RNA 0.38 TCGA-66-2788-01 X 83129612 83129612 A T CYLC1 Silent p.P632P 0.67 TCGA-66-2788-01 X 84363064 84363064 G C SATL1 Nonsense_Mutation p.S304* 0.37 TCGA-66-2789-01 10 100010855 100010855 C T LOXL4 Missense_Mutation p.G723R 0.27 deleterious(0) probably_damaging(0.997) TCGA-66-2789-01 10 102783315 102783315 G T PDZD7 Missense_Mutation p.S140R 0.27 deleterious(0.01) probably_damaging(0.958) TCGA-66-2789-01 10 108337279 108337279 T C SORCS1 Intron 0.36 TCGA-66-2789-01 10 118354329 118354329 G A PNLIPRP1 Missense_Mutation p.V140M 0.35 deleterious(0.02) benign(0.43) TCGA-66-2789-01 10 119805520 119805520 G C RAB11FIP2 Missense_Mutation p.A52G 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-66-2789-01 10 124457592 124457592 T A C10orf120 Missense_Mutation p.D222V 0.34 tolerated(0.16) benign(0.226) TCGA-66-2789-01 10 129172398 129172398 A T DOCK1 Missense_Mutation p.M1178L 0.37 tolerated(1) benign(0.067) TCGA-66-2789-01 10 13214719 13214719 A G MCM10 Silent p.L183L 0.28 TCGA-66-2789-01 10 21250653 21250653 G C NEBL Missense_Mutation p.T68R 0.30 deleterious(0.04) possibly_damaging(0.6) TCGA-66-2789-01 10 33543123 33543123 C A NRP1 Splice_Site p.X272_splice 0.33 TCGA-66-2789-01 10 37505199 37505199 G C ANKRD30A Missense_Mutation p.G931A 0.19 tolerated(1) benign(0.066) TCGA-66-2789-01 10 45878095 45878095 C A ALOX5 Silent p.T105T 0.33 TCGA-66-2789-01 10 50121473 50121473 G C LRRC18 Missense_Mutation p.P243R 0.29 deleterious(0) probably_damaging(0.997) TCGA-66-2789-01 10 50820151 50820151 G C SLC18A3 Missense_Mutation p.M455I 0.20 tolerated(1) benign(0.016) TCGA-66-2789-01 10 67680202 67680202 C A CTNNA3 Missense_Mutation p.L858F 0.21 deleterious(0) unknown(0) TCGA-66-2789-01 10 8051097 8051097 G A TAF3 Missense_Mutation p.R791K 0.41 tolerated_low_confidence(0.59) benign(0.067) TCGA-66-2789-01 10 85974132 85974134 AAC - CDHR1 In_Frame_Del p.N781del 0.23 TCGA-66-2789-01 10 86007505 86007505 T C RGR Splice_Site p.X79_splice 0.26 TCGA-66-2789-01 10 863800 863800 T C LARP4B Silent p.P520P 0.40 TCGA-66-2789-01 10 88414386 88414386 C T OPN4 5'UTR 0.38 TCGA-66-2789-01 10 97918053 97918053 A G ZNF518A RNA 0.33 TCGA-66-2789-01 11 101771162 101771162 T C ANGPTL5 Silent p.L220L 0.40 TCGA-66-2789-01 11 104869747 104869747 C A CASP5 Missense_Mutation p.G334W 0.21 deleterious(0) probably_damaging(1) TCGA-66-2789-01 11 113570795 113570795 C A TMPRSS5 Missense_Mutation p.Q33H 0.29 tolerated(0.11) benign(0.429) TCGA-66-2789-01 11 113650742 113650742 G C CLDN25 Missense_Mutation p.Q75H 0.29 tolerated(0.54) possibly_damaging(0.726) TCGA-66-2789-01 11 116692455 116692455 C T APOA4 Missense_Mutation p.E107K 0.25 tolerated(0.09) benign(0.049) TCGA-66-2789-01 11 117308664 117308664 C T DSCAML1 Missense_Mutation p.S1520N 0.26 tolerated(0.18) benign(0.274) TCGA-66-2789-01 11 123624810 123624810 G T OR6X1 Nonsense_Mutation p.C139* 0.20 TCGA-66-2789-01 11 17464298 17464298 G C ABCC8 Silent p.L533L 0.22 TCGA-66-2789-01 11 22249067 22249067 C A ANO5 Silent p.R195R 0.28 TCGA-66-2789-01 11 27148880 27148880 C T BBOX1 Silent p.G348G 0.31 TCGA-66-2789-01 11 4967961 4967961 T C OR51A4 Missense_Mutation p.R124G 0.38 deleterious(0) probably_damaging(0.925) TCGA-66-2789-01 11 55587801 55587801 C G OR5D18 Silent p.V232V 0.28 TCGA-66-2789-01 11 55944513 55944513 G T OR5J2 Missense_Mutation p.K140N 0.23 deleterious(0.02) benign(0.356) TCGA-66-2789-01 11 56000524 56000524 A G OR5T2 Silent p.T46T 0.25 TCGA-66-2789-01 11 5719761 5719761 G C TRIM22 Missense_Mutation p.V246L 0.29 tolerated(0.22) benign(0.002) TCGA-66-2789-01 11 57958617 57958617 C G OR9Q2 Missense_Mutation p.L219V 0.20 tolerated(0.23) benign(0.12) TCGA-66-2789-01 11 57982498 57982498 G C OR1S1 Missense_Mutation p.M94I 0.14 deleterious(0.03) benign(0.443) TCGA-66-2789-01 11 57982499 57982499 C T OR1S1 Silent p.L95L 0.14 TCGA-66-2789-01 11 58274962 58274962 A T OR5B21 Missense_Mutation p.F206Y 0.27 deleterious_low_confidence(0) possibly_damaging(0.595) TCGA-66-2789-01 11 58979628 58979628 G T MPEG1 Silent p.T237T 0.19 TCGA-66-2789-01 11 6007601 6007601 C A OR52L1 Missense_Mutation p.C187F 0.40 deleterious(0) probably_damaging(1) TCGA-66-2789-01 11 61490431 61490431 C G DAGLA Silent p.L136L 0.22 TCGA-66-2789-01 11 61645000 61645000 C A FADS3 Missense_Mutation p.V290L 0.25 tolerated(0.83) benign(0.01) TCGA-66-2789-01 11 64695280 64695280 G A PPP2R5B Missense_Mutation p.V135M 0.32 deleterious(0.04) possibly_damaging(0.602) TCGA-66-2789-01 11 64878989 64878989 C T VPS51 Missense_Mutation p.A760V 0.37 deleterious(0.01) possibly_damaging(0.521) TCGA-66-2789-01 11 67234994 67234994 G C TMEM134 Missense_Mutation p.R103G 0.10 tolerated(0.33) possibly_damaging(0.823) TCGA-66-2789-01 11 73785376 73785376 G A C2CD3 Nonsense_Mutation p.Q1625* 0.10 TCGA-66-2789-01 11 85397009 85397009 C A CCDC89 Silent p.L55L 0.21 TCGA-66-2789-01 11 8947056 8947056 C G C11orf16 Missense_Mutation p.W386C 0.23 deleterious(0) probably_damaging(1) TCGA-66-2789-01 11 93826744 93826744 C A HEPHL1 Missense_Mutation p.T791K 0.36 deleterious(0.01) possibly_damaging(0.532) TCGA-66-2789-01 11 93836182 93836182 T A HEPHL1 Missense_Mutation p.V893E 0.11 deleterious(0.01) probably_damaging(0.962) TCGA-66-2789-01 11 99827644 99827644 A T CNTN5 Missense_Mutation p.Q260H 0.38 deleterious(0.01) probably_damaging(1) TCGA-66-2789-01 12 100433461 100433461 C G UHRF1BP1L Silent p.T1396T 0.30 TCGA-66-2789-01 12 104089339 104089339 A T STAB2 Silent p.P1129P 0.28 TCGA-66-2789-01 12 104489180 104489180 T G HCFC2 Missense_Mutation p.L502R 0.32 deleterious(0.04) probably_damaging(0.986) TCGA-66-2789-01 12 108920092 108920092 C T SART3 Silent p.P718P 0.33 TCGA-66-2789-01 12 109665238 109665238 G T ACACB Silent p.P1315P 0.30 TCGA-66-2789-01 12 112846236 112846237 - A RPL6 Frame_Shift_Ins p.A76Rfs*2 0.18 TCGA-66-2789-01 12 116446238 116446238 C A MED13L Missense_Mutation p.M660I 0.13 tolerated(0.45) unknown(0) TCGA-66-2789-01 12 12356314 12356314 C A LRP6 Missense_Mutation p.W157L 0.24 deleterious(0.04) probably_damaging(1) TCGA-66-2789-01 12 129467608 129467608 G T GLT1D1 Missense_Mutation p.R258S 0.28 tolerated(0.82) benign(0.005) TCGA-66-2789-01 12 132329857 132329857 G T MMP17 Missense_Mutation p.R356L 0.44 deleterious(0) probably_damaging(1) TCGA-66-2789-01 12 133779072 133779072 A G ZNF268 Missense_Mutation p.Q267R 0.30 deleterious(0.01) benign(0.016) TCGA-66-2789-01 12 14019093 14019093 G T GRIN2B Missense_Mutation p.A17D 0.21 tolerated(0.18) benign(0.047) TCGA-66-2789-01 12 19473549 19473549 A G PLEKHA5 Silent p.V736V 0.24 TCGA-66-2789-01 12 20858991 20858991 C G SLCO1C1 Missense_Mutation p.A127G 0.28 tolerated(0.07) benign(0.311) TCGA-66-2789-01 12 21790085 21790085 T C LDHB Missense_Mutation p.I253V 0.32 tolerated(0.1) benign(0.007) TCGA-66-2789-01 12 21998678 21998678 G T ABCC9 Nonsense_Mutation p.Y985* 0.24 TCGA-66-2789-01 12 330173 330173 C A SLC6A13 Missense_Mutation p.A584S 0.33 tolerated(0.73) benign(0.001) TCGA-66-2789-01 12 46591839 46591839 C T SLC38A1 Missense_Mutation p.R376H 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-66-2789-01 12 50367133 50367133 C T AQP6 Silent p.A59A 0.18 TCGA-66-2789-01 12 51584140 51584140 C T POU6F1 Missense_Mutation p.E266K 0.34 deleterious(0.02) benign(0.009) TCGA-66-2789-01 12 52914004 52914004 G A KRT5 Missense_Mutation p.S26F 0.36 deleterious(0) possibly_damaging(0.485) TCGA-66-2789-01 12 55614955 55614955 C A OR10A7 Silent p.T49T 0.26 TCGA-66-2789-01 12 56091005 56091005 G T ITGA7 Missense_Mutation p.T525N 0.37 tolerated(0.52) benign(0.038) TCGA-66-2789-01 12 57910715 57910715 C T DDIT3 Silent p.R152R 0.21 TCGA-66-2789-01 12 57966467 57966467 G T KIF5A Silent p.L558L 0.26 TCGA-66-2789-01 12 58165941 58165941 T A METTL1 5'UTR 0.28 TCGA-66-2789-01 12 6061009 6061009 C A VWF Splice_Site p.X2719_splice 0.29 TCGA-66-2789-01 12 6964980 6964980 C T USP5 Missense_Mutation p.A100V 0.28 tolerated(0.08) benign(0.011) TCGA-66-2789-01 12 69742157 69742157 G C LYZ 5'UTR 0.18 TCGA-66-2789-01 12 7187955 7187955 G A C1R Missense_Mutation p.R615C 0.19 deleterious(0.01) possibly_damaging(0.794) TCGA-66-2789-01 12 7882298 7882298 C A CLEC4C Missense_Mutation p.R179L 0.29 deleterious(0.03) possibly_damaging(0.885) TCGA-66-2789-01 12 81688782 81688782 T A PPFIA2 Silent p.A919A 0.16 TCGA-66-2789-01 13 108518418 108518418 G A FAM155A Missense_Mutation p.A176V 0.39 tolerated(0.24) probably_damaging(0.994) TCGA-66-2789-01 13 111077187 111077187 C T COL4A2 Missense_Mutation p.P96L 0.24 probably_damaging(0.97) TCGA-66-2789-01 13 20039417 20039417 G A TPTE2 Silent p.D218D 0.21 TCGA-66-2789-01 13 20346607 20346607 C A PSPC1 Missense_Mutation p.R150L 0.27 deleterious(0) probably_damaging(0.937) TCGA-66-2789-01 13 32868646 32868646 A - FRY Frame_Shift_Del p.M2908Cfs*5 0.31 TCGA-66-2789-01 13 36909559 36909559 G A SPG20 Nonsense_Mutation p.Q137* 0.32 TCGA-66-2789-01 13 38145587 38145587 G T POSTN Missense_Mutation p.L700I 0.24 tolerated(1) benign(0) TCGA-66-2789-01 13 58208897 58208897 T A PCDH17 Silent p.T739T 0.16 TCGA-66-2789-01 13 67799735 67799735 A T PCDH9 Silent p.P946P 0.26 TCGA-66-2789-01 13 77670488 77670488 C G MYCBP2 Missense_Mutation p.E3267Q 0.27 probably_damaging(0.979) TCGA-66-2789-01 13 79175661 79175661 C A POU4F1 Missense_Mutation p.E383D 0.28 deleterious(0.04) unknown(0) TCGA-66-2789-01 13 99907653 99907653 C G GPR18 Silent p.L158L 0.25 TCGA-66-2789-01 14 105408092 105408092 C T AHNAK2 Missense_Mutation p.V4566M 0.23 possibly_damaging(0.561) TCGA-66-2789-01 14 105415986 105415986 G A AHNAK2 Silent p.D1934D 0.47 TCGA-66-2789-01 14 20296217 20296217 G T OR4N2 Missense_Mutation p.G204C 0.21 deleterious(0) probably_damaging(1) TCGA-66-2789-01 14 20296218 20296218 G T OR4N2 Missense_Mutation p.G204V 0.21 deleterious(0) probably_damaging(1) TCGA-66-2789-01 14 20483161 20483161 C A OR4K14 Silent p.L64L 0.33 TCGA-66-2789-01 14 21547127 21547127 G T ARHGEF40 Silent p.V777V 0.50 TCGA-66-2789-01 14 23873577 23873577 G A MYH6 Silent p.I221I 0.37 TCGA-66-2789-01 14 45468664 45468664 C G FAM179B Missense_Mutation p.Q768E 0.37 tolerated(0.1) benign(0.015) TCGA-66-2789-01 14 57949804 57949804 G TT C14orf105 Frame_Shift_Ins p.R125Kfs*22 0.47 TCGA-66-2789-01 14 60072126 60072126 C A RTN1 Missense_Mutation p.R691M 0.38 deleterious(0) probably_damaging(0.992) TCGA-66-2789-01 14 60591742 60591742 A G PCNXL4 Silent p.E717E 0.37 TCGA-66-2789-01 14 88792814 88792814 G T KCNK10 5'Flank 0.68 TCGA-66-2789-01 14 94079210 94079210 C T UNC79 Silent p.H1097H 0.24 TCGA-66-2789-01 14 96773242 96773242 C T ATG2B Missense_Mutation p.E1439K 0.52 tolerated(0.14) benign(0.031) TCGA-66-2789-01 15 101832213 101832213 G A SNRPA1 Missense_Mutation p.P88L 0.22 deleterious(0) probably_damaging(0.966) TCGA-66-2789-01 15 102261405 102261405 C A TARSL2 Missense_Mutation p.V164L 0.44 deleterious(0.03) possibly_damaging(0.633) TCGA-66-2789-01 15 102346577 102346577 A G OR4F6 Missense_Mutation p.I219V 0.37 tolerated_low_confidence(0.2) benign(0.042) TCGA-66-2789-01 15 25342839 25342839 A T SNORD116-25 RNA 0.25 TCGA-66-2789-01 15 28478864 28478864 C A HERC2 Missense_Mutation p.V1433L 0.20 possibly_damaging(0.651) TCGA-66-2789-01 15 40094083 40094083 G A GPR176 Silent p.A266A 0.25 TCGA-66-2789-01 15 42106796 42106796 C T MAPKBP1 Silent p.A349A 0.35 TCGA-66-2789-01 15 42742430 42742430 T C ZNF106 Silent p.T657T 0.31 TCGA-66-2789-01 15 42805639 42805639 C A SNAP23 Missense_Mutation p.Q48K 0.27 deleterious(0) probably_damaging(1) TCGA-66-2789-01 15 48429046 48429046 G A SLC24A5 Missense_Mutation p.E253K 0.26 tolerated(0.08) benign(0.004) TCGA-66-2789-01 15 49833966 49833966 G A FAM227B Missense_Mutation p.T262M 0.23 deleterious(0.01) probably_damaging(0.93) TCGA-66-2789-01 15 72039276 72039276 G A THSD4 Silent p.L712L 0.32 TCGA-66-2789-01 15 74554868 74554868 G A CCDC33 Silent p.G91G 0.44 TCGA-66-2789-01 15 80806740 80806740 C A ARNT2 Missense_Mutation p.P291T 0.47 deleterious(0.01) possibly_damaging(0.641) TCGA-66-2789-01 15 83926867 83926867 T C BNC1 Missense_Mutation p.N771S 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-66-2789-01 15 90255313 90255313 C A WDR93 Missense_Mutation p.D206E 0.26 tolerated(0.06) possibly_damaging(0.623) TCGA-66-2789-01 16 1034811 1034811 C A SOX8 Missense_Mutation p.R256S 0.26 deleterious(0.03) possibly_damaging(0.717) TCGA-66-2789-01 16 20331786 20331786 C T GP2 Missense_Mutation p.S222N 0.21 tolerated(0.7) benign(0.009) TCGA-66-2789-01 16 21655691 21655691 G C IGSF6 Missense_Mutation p.R152G 0.22 tolerated(0.27) benign(0.07) TCGA-66-2789-01 16 30773976 30773976 G A RNF40 Missense_Mutation p.R37H 0.18 tolerated(0.06) possibly_damaging(0.654) TCGA-66-2789-01 16 31309153 31309153 G T ITGAM Missense_Mutation p.D530Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-66-2789-01 16 48158195 48158195 C G ABCC12 Missense_Mutation p.G506R 0.31 deleterious(0) probably_damaging(0.991) TCGA-66-2789-01 16 789680 789680 C T NARFL Missense_Mutation p.R42H 0.30 tolerated(0.33) benign(0.001) TCGA-66-2789-01 16 84473128 84473128 G A ATP2C2 Missense_Mutation p.E403K 0.32 tolerated(0.13) probably_damaging(0.944) TCGA-66-2789-01 17 11520814 11520814 G T DNAH9 Missense_Mutation p.V331L 0.42 benign(0.002) TCGA-66-2789-01 17 27818857 27818857 C G TAOK1 Missense_Mutation p.R269G 0.38 deleterious(0) probably_damaging(1) TCGA-66-2789-01 17 46109586 46109586 T C COPZ2 Missense_Mutation p.K142E 0.22 deleterious(0) benign(0.101) TCGA-66-2789-01 17 56277147 56277147 T C EPX Missense_Mutation p.V510A 0.69 deleterious(0.04) possibly_damaging(0.495) TCGA-66-2789-01 17 56389036 56389036 G A BZRAP1 Missense_Mutation p.P993S 0.28 tolerated(0.06) benign(0.089) TCGA-66-2789-01 17 57754494 57754494 C T CLTC Missense_Mutation p.P914L 0.65 deleterious(0) probably_damaging(1) TCGA-66-2789-01 17 59480532 59480532 C A TBX2 Silent p.T258T 0.68 TCGA-66-2789-01 17 61897535 61897535 T C FTSJ3 Splice_Site p.X753_splice 0.55 TCGA-66-2789-01 17 62290610 62290610 G C TEX2 Nonsense_Mutation p.S323* 0.18 TCGA-66-2789-01 17 72349680 72349680 C A KIF19 Missense_Mutation p.D756E 0.63 tolerated(1) benign(0.001) TCGA-66-2789-01 17 72349681 72349681 A G KIF19 Missense_Mutation p.S757G 0.63 deleterious(0.05) benign(0.013) TCGA-66-2789-01 17 78058646 78058646 G A CCDC40 Silent p.L698L 0.21 TCGA-66-2789-01 17 79872183 79872183 C A SIRT7 Missense_Mutation p.G268V 0.45 deleterious(0) probably_damaging(1) TCGA-66-2789-01 18 14851720 14851720 G T ANKRD30B Missense_Mutation p.R1140S 0.41 tolerated(0.05) possibly_damaging(0.542) TCGA-66-2789-01 18 14851721 14851721 G T ANKRD30B Missense_Mutation p.A1141S 0.40 deleterious(0.01) probably_damaging(0.971) TCGA-66-2789-01 18 28934344 28934344 C A DSG1 Missense_Mutation p.P729T 0.23 deleterious(0) probably_damaging(0.964) TCGA-66-2789-01 18 29044116 29044116 G - DSG3 Frame_Shift_Del p.A348Lfs*27 0.14 TCGA-66-2789-01 18 29793520 29793520 C A MEP1B Missense_Mutation p.T526N 0.19 tolerated(0.13) benign(0.008) TCGA-66-2789-01 18 29867260 29867260 G T GAREM Missense_Mutation p.L434I 0.29 tolerated(0.06) benign(0.003) TCGA-66-2789-01 18 33710009 33710009 G T ELP2 Missense_Mutation p.C38F 0.24 deleterious(0.05) benign(0.009) TCGA-66-2789-01 18 50592439 50592439 T A DCC Silent p.L388L 0.19 TCGA-66-2789-01 18 65181699 65181699 A T DSEL Missense_Mutation p.D59E 0.22 tolerated_low_confidence(0.87) benign(0.004) TCGA-66-2789-01 19 11215926 11215926 G C LDLR Missense_Mutation p.R115P 0.39 deleterious(0.03) probably_damaging(0.982) TCGA-66-2789-01 19 17533012 17533012 C G MVB12A Intron 0.30 TCGA-66-2789-01 19 19380567 19380568 CG T TM6SF2 Frame_Shift_Del p.N139Ifs*12 0.20 TCGA-66-2789-01 19 21991722 21991722 T C ZNF43 Missense_Mutation p.T373A 0.34 deleterious(0.05) benign(0.215) TCGA-66-2789-01 19 30313189 30313189 C A CCNE1 Missense_Mutation p.P295T 0.29 tolerated(0.64) benign(0.013) TCGA-66-2789-01 19 36034322 36034322 C A GAPDHS Silent p.A274A 0.26 TCGA-66-2789-01 19 37880462 37880462 G A ZNF527 Missense_Mutation p.G504E 0.24 deleterious(0.02) probably_damaging(1) TCGA-66-2789-01 19 38160382 38160382 A G ZNF781 Missense_Mutation p.I223T 0.08 tolerated(0.6) benign(0.152) TCGA-66-2789-01 19 38572647 38572647 G C SIPA1L3 Missense_Mutation p.D148H 0.22 deleterious(0) probably_damaging(0.94) TCGA-66-2789-01 19 39078377 39078377 C A MAP4K1 3'UTR 0.15 TCGA-66-2789-01 19 39760578 39760578 C T IFNL2 Silent p.A176A 0.37 TCGA-66-2789-01 19 44096971 44096971 C T IRGQ Missense_Mutation p.G360E 0.24 tolerated(0.73) benign(0.025) TCGA-66-2789-01 19 45397079 45397079 C G TOMM40 Missense_Mutation p.L160V 0.21 deleterious(0.04) possibly_damaging(0.896) TCGA-66-2789-01 19 45888902 45888902 G A PPP1R13L Silent p.T722T 0.19 TCGA-66-2789-01 19 48734082 48734082 C G CARD8 Missense_Mutation p.E242Q 0.22 tolerated(0.49) benign(0.223) TCGA-66-2789-01 19 50462101 50462101 G T SIGLEC11 Missense_Mutation p.R388S 0.39 tolerated(0.11) benign(0.317) TCGA-66-2789-01 19 50549003 50549003 G C ZNF473 Missense_Mutation p.E435Q 0.43 deleterious(0.02) possibly_damaging(0.847) TCGA-66-2789-01 19 50549375 50549375 G C ZNF473 Missense_Mutation p.E559Q 0.49 deleterious(0.01) benign(0.403) TCGA-66-2789-01 19 51200905 51200905 C T SHANK1 Silent p.K626K 0.17 TCGA-66-2789-01 19 51729094 51729094 A T CD33 Missense_Mutation p.T152S 0.45 tolerated(0.12) benign(0.129) TCGA-66-2789-01 19 51769043 51769043 T C SIGLECL1 Missense_Mutation p.L106S 0.18 tolerated(0.13) benign(0.11) TCGA-66-2789-01 19 53770038 53770038 C A VN1R4 Missense_Mutation p.R294M 0.10 tolerated(0.05) benign(0.187) TCGA-66-2789-01 19 55046802 55046802 C A KIR3DX1 Intron 0.17 TCGA-66-2789-01 19 55832413 55832413 C G TMEM150B 5'UTR 0.41 TCGA-66-2789-01 19 56369842 56369842 G T NLRP4 Silent p.L361L 0.47 TCGA-66-2789-01 19 58152141 58152141 A C ZNF211 Missense_Mutation p.Q161P 0.18 deleterious(0.02) possibly_damaging(0.563) TCGA-66-2789-01 19 58153536 58153536 G T ZNF211 Missense_Mutation p.G626V 0.21 deleterious(0.02) possibly_damaging(0.573) TCGA-66-2789-01 19 58579130 58579130 C T ZNF135 Silent p.T450T 0.29 TCGA-66-2789-01 1 109910038 109910038 T A SORT1 Silent p.L144L 0.22 TCGA-66-2789-01 1 110028702 110028702 A T ATXN7L2 Nonsense_Mutation p.K51* 0.33 TCGA-66-2789-01 1 110087066 110087066 G A GPR61 3'UTR 0.40 TCGA-66-2789-01 1 120437651 120437651 C G ADAM30 Missense_Mutation p.A437P 0.28 deleterious(0) probably_damaging(0.997) TCGA-66-2789-01 1 12409360 12409360 G A VPS13D Silent p.V3120V 0.29 TCGA-66-2789-01 1 144874717 144874717 G C PDE4DIP Missense_Mutation p.H1631D 0.14 tolerated(0.06) benign(0.096) TCGA-66-2789-01 1 151501956 151501956 G T CGN Missense_Mutation p.G676V 0.14 tolerated(0.52) benign(0.005) TCGA-66-2789-01 1 156450738 156450738 C A MEF2D Missense_Mutation p.G95V 0.23 deleterious(0) possibly_damaging(0.853) TCGA-66-2789-01 1 156563309 156563309 G C APOA1BP Missense_Mutation p.G209A 0.19 tolerated(0.47) benign(0.043) TCGA-66-2789-01 1 157667113 157667113 C G FCRL3 Missense_Mutation p.D221H 0.28 tolerated(0.55) benign(0.008) TCGA-66-2789-01 1 160395042 160395042 A C VANGL2 Missense_Mutation p.L480F 0.32 deleterious(0) probably_damaging(0.999) TCGA-66-2789-01 1 161641367 161641367 G T FCGR2B Missense_Mutation p.D107Y 0.25 deleterious(0) probably_damaging(0.932) TCGA-66-2789-01 1 167852846 167852846 C G ADCY10 Missense_Mutation p.Q283H 0.24 tolerated(0.29) benign(0.308) TCGA-66-2789-01 1 169336993 169336993 G T NME7 5'UTR 0.15 TCGA-66-2789-01 1 176661376 176661376 C T PAPPA2 Missense_Mutation p.P849L 0.33 deleterious(0.05) probably_damaging(1) TCGA-66-2789-01 1 179523750 179523750 A T AXDND1 3'UTR 0.31 TCGA-66-2789-01 1 185703863 185703869 GCACAGT - HMCN1 5'UTR 0.22 TCGA-66-2789-01 1 193028549 193028549 C A UCHL5 5'UTR 0.29 TCGA-66-2789-01 1 197071710 197071710 C G ASPM Missense_Mutation p.W2224S 0.22 deleterious(0) benign(0.009) TCGA-66-2789-01 1 20517269 20517269 A G UBXN10 Missense_Mutation p.Y72C 0.34 tolerated(0.19) benign(0) TCGA-66-2789-01 1 207510715 207510715 C A CD55 Missense_Mutation p.H341N 0.27 tolerated(0.57) benign(0.056) TCGA-66-2789-01 1 214571303 214571303 C G PTPN14 Missense_Mutation p.M237I 0.13 tolerated(0.2) benign(0.012) TCGA-66-2789-01 1 214638195 214638196 CT - PTPN14 5'UTR 0.28 TCGA-66-2789-01 1 220232316 220232316 T C BPNT1 Missense_Mutation p.H266R 0.30 tolerated(0.22) benign(0.044) TCGA-66-2789-01 1 234041399 234041399 G C SLC35F3 Missense_Mutation p.V60L 0.29 deleterious_low_confidence(0.04) benign(0.118) TCGA-66-2789-01 1 247875985 247875985 G T OR6F1 Missense_Mutation p.L25I 0.06 tolerated(1) benign(0.001) TCGA-66-2789-01 1 247978670 247978670 T C OR14A16 Missense_Mutation p.Y121C 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-66-2789-01 1 248128902 248128902 C A OR2AK2 Missense_Mutation p.S90Y 0.27 deleterious(0) probably_damaging(0.95) TCGA-66-2789-01 1 248436152 248436152 G T OR2T33 3'UTR 0.22 TCGA-66-2789-01 1 248512845 248512845 T C OR14C36 Missense_Mutation p.Y257H 0.25 tolerated(0.06) possibly_damaging(0.521) TCGA-66-2789-01 1 248512948 248512948 G A OR14C36 Missense_Mutation p.R291K 0.26 deleterious(0.04) possibly_damaging(0.45) TCGA-66-2789-01 1 248813460 248813460 G A OR2T27 Silent p.S242S 0.33 TCGA-66-2789-01 1 248845065 248845065 G A OR14I1 Missense_Mutation p.H181Y 0.26 deleterious(0) possibly_damaging(0.884) TCGA-66-2789-01 1 3334561 3334561 G A PRDM16 Missense_Mutation p.R954K 0.32 tolerated(0.54) benign(0.081) TCGA-66-2789-01 1 38344005 38344005 A G INPP5B Intron 0.34 TCGA-66-2789-01 1 42047130 42047141 GGGCCCCAATGG - HIVEP3 In_Frame_Del p.P1110_P1113del 0.37 TCGA-66-2789-01 1 45242381 45242381 G T RPS8 Missense_Mutation p.R49L 0.32 deleterious(0) possibly_damaging(0.899) TCGA-66-2789-01 1 46660018 46660018 G T POMGNT1 Nonsense_Mutation p.C269* 0.25 TCGA-66-2789-01 1 55474046 55474046 C G BSND Missense_Mutation p.D236E 0.22 tolerated(0.16) benign(0.333) TCGA-66-2789-01 1 75037757 75037757 C A C1orf173 Nonsense_Mutation p.E1213* 0.36 TCGA-66-2789-01 1 75038942 75038942 G T C1orf173 Missense_Mutation p.Q818K 0.22 tolerated(0.24) benign(0.26) TCGA-66-2789-01 1 77620189 77620189 C G PIGK Missense_Mutation p.E311Q 0.25 tolerated(0.08) benign(0.086) TCGA-66-2789-01 1 85488037 85488037 G T MCOLN3 Missense_Mutation p.T381N 0.24 tolerated(0.07) possibly_damaging(0.665) TCGA-66-2789-01 1 86959196 86959196 T G CLCA1 Missense_Mutation p.W532G 0.28 tolerated(0.31) benign(0.006) TCGA-66-2789-01 1 91180241 91180241 C A BARHL2 Missense_Mutation p.R233L 0.26 deleterious(0.01) unknown(0) TCGA-66-2789-01 1 9613784 9613784 C G SLC25A33 Missense_Mutation p.Q53E 0.30 tolerated(0.97) possibly_damaging(0.615) TCGA-66-2789-01 20 1552435 1552435 C A SIRPB1 Nonsense_Mutation p.E228* 0.25 TCGA-66-2789-01 20 20486105 20486105 C A RALGAPA2 Nonsense_Mutation p.E1668* 0.28 TCGA-66-2789-01 20 30038016 30038016 C T DEFB123 3'UTR 0.18 TCGA-66-2789-01 20 31380550 31380550 G A DNMT3B Missense_Mutation p.G347D 0.39 deleterious(0.02) probably_damaging(1) TCGA-66-2789-01 20 3652789 3652789 C G ADAM33 Missense_Mutation p.W530S 0.29 deleterious(0) probably_damaging(1) TCGA-66-2789-01 20 37356487 37356487 G T SLC32A1 Missense_Mutation p.K261N 0.32 deleterious(0.03) possibly_damaging(0.463) TCGA-66-2789-01 20 37657096 37657096 G A DHX35 Missense_Mutation p.G613S 0.33 deleterious(0) probably_damaging(0.964) TCGA-66-2789-01 20 43836175 43836175 C T SEMG1 Silent p.S79S 0.19 TCGA-66-2789-01 20 52193465 52193465 T A ZNF217 Missense_Mutation p.K613I 0.37 deleterious(0.02) benign(0.235) TCGA-66-2789-01 20 58318296 58318296 A G PHACTR3 Missense_Mutation p.N85D 0.30 deleterious(0.01) benign(0.312) TCGA-66-2789-01 20 5904410 5904410 C A CHGB Missense_Mutation p.D540E 0.22 deleterious(0.01) probably_damaging(0.931) TCGA-66-2789-01 20 8862385 8862385 T C PLCB1 Silent p.G1180G 0.22 TCGA-66-2789-01 20 896599 896599 C G ANGPT4 Missense_Mutation p.V87L 0.21 tolerated(1) benign(0.01) TCGA-66-2789-01 20 9368183 9368183 T A PLCB4 Missense_Mutation p.C380S 0.33 deleterious(0) probably_damaging(0.999) TCGA-66-2789-01 21 10862644 10862644 T A IGHV1OR21-1 Missense_Mutation p.L8Q 0.08 deleterious(0) probably_damaging(0.956) TCGA-66-2789-01 21 11049548 11049548 A T BAGE2 RNA 0.10 TCGA-66-2789-01 21 31744283 31744283 G A KRTAP13-2 Silent p.P83P 0.32 TCGA-66-2789-01 21 31797811 31797811 C G KRTAP13-3 Missense_Mutation p.Q140H 0.24 deleterious(0) possibly_damaging(0.796) TCGA-66-2789-01 21 45548185 45548185 T C PWP2 Missense_Mutation p.L806S 0.26 deleterious(0) probably_damaging(0.974) TCGA-66-2789-01 21 45815337 45815337 C G TRPM2 Nonsense_Mutation p.S612* 0.22 TCGA-66-2789-01 21 46310005 46310005 C A ITGB2 Silent p.G515G 0.19 TCGA-66-2789-01 22 37322057 37322057 C T CSF2RB Missense_Mutation p.L77F 0.43 tolerated(0.09) benign(0.036) TCGA-66-2789-01 22 38202156 38202156 G A H1F0 3'UTR 0.25 TCGA-66-2789-01 2 101185427 101185427 G T PDCL3 Silent p.L56L 0.26 TCGA-66-2789-01 2 101185428 101185428 G T PDCL3 Nonsense_Mutation p.E57* 0.25 TCGA-66-2789-01 2 128346007 128346007 C A MYO7B Silent p.I577I 0.36 TCGA-66-2789-01 2 141250260 141250260 C A LRP1B Nonsense_Mutation p.E3013* 0.24 TCGA-66-2789-01 2 149226852 149226852 G A MBD5 Missense_Mutation p.G447E 0.35 deleterious(0) probably_damaging(0.969) TCGA-66-2789-01 2 162036186 162036186 A G TANK Missense_Mutation p.I5V 0.22 deleterious(0) benign(0.217) TCGA-66-2789-01 2 168105999 168105999 C A XIRP2 Silent p.P2699P 0.24 TCGA-66-2789-01 2 168110642 168110642 G A XIRP2 3'UTR 0.35 TCGA-66-2789-01 2 179425815 179425815 A T TTN Silent p.V28348V 0.28 TCGA-66-2789-01 2 179437674 179437674 A G TTN Silent p.Y24395Y 0.32 TCGA-66-2789-01 2 179556764 179556764 C A TTN Nonsense_Mutation p.E10581* 0.35 TCGA-66-2789-01 2 179588731 179588731 G T TTN Silent p.V7085V 0.31 TCGA-66-2789-01 2 190927155 190927155 A C MSTN Missense_Mutation p.I56M 0.26 deleterious(0) probably_damaging(0.993) TCGA-66-2789-01 2 196825422 196825422 G A DNAH7 Missense_Mutation p.P818L 0.21 deleterious(0.02) possibly_damaging(0.847) TCGA-66-2789-01 2 197521505 197521505 A T CCDC150 Missense_Mutation p.S109C 0.27 deleterious(0) probably_damaging(0.999) TCGA-66-2789-01 2 211541783 211541783 A G CPS1 Missense_Mutation p.T1449A 0.20 tolerated(0.91) possibly_damaging(0.561) TCGA-66-2789-01 2 21247880 21247880 G A APOB Silent p.A787A 0.26 TCGA-66-2789-01 2 218925269 218925269 G T CXCR2P1 RNA 0.42 TCGA-66-2789-01 2 241656788 241656788 C T KIF1A Missense_Mutation p.R1790Q 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.586) TCGA-66-2789-01 2 242076623 242076624 - A PASK Frame_Shift_Ins p.S312Efs*17 0.16 TCGA-66-2789-01 2 3595592 3595592 C T RNASEH1 Missense_Mutation p.G235R 0.23 deleterious(0) probably_damaging(0.978) TCGA-66-2789-01 2 37241161 37241161 T A HEATR5B Silent p.V1369V 0.38 TCGA-66-2789-01 2 37265146 37265146 G A HEATR5B Missense_Mutation p.T1023I 0.25 deleterious(0.02) benign(0.211) TCGA-66-2789-01 2 43514126 43514126 A G THADA Silent p.P1695P 0.37 TCGA-66-2789-01 2 47356973 47356973 G A C2orf61 Intron 0.46 TCGA-66-2789-01 2 48873855 48873855 C T STON1-GTF2A1L Missense_Mutation p.L922F 0.23 tolerated(0.58) benign(0.015) TCGA-66-2789-01 2 55786013 55786013 A G SMEK2 Silent p.N784N 0.04 TCGA-66-2789-01 2 60679756 60679756 T G BCL11A 3'Flank 0.05 TCGA-66-2789-01 2 62449632 62449632 C T B3GNT2 Silent p.L93L 0.42 TCGA-66-2789-01 2 66662988 66662988 G C MEIS1 5'UTR 0.12 TCGA-66-2789-01 2 7001358 7001358 C A CMPK2 Nonsense_Mutation p.E317* 0.21 TCGA-66-2789-01 2 79312409 79312409 C A REG1B Missense_Mutation p.G145V 0.51 deleterious(0) probably_damaging(0.991) TCGA-66-2789-01 2 79312410 79312410 C A REG1B Splice_Site p.X145_splice 0.50 TCGA-66-2789-01 2 85008759 85008759 A T DNAH6 Nonsense_Mutation p.K3616* 0.38 TCGA-66-2789-01 2 95513804 95513804 C A RNU6-1320P 5'Flank 0.16 TCGA-66-2789-01 2 96992653 96992653 C T ITPRIPL1 Missense_Mutation p.P103L 0.31 tolerated(0.11) benign(0.002) TCGA-66-2789-01 2 98844703 98844703 G A VWA3B Silent p.Q686Q 0.26 TCGA-66-2789-01 3 101384447 101384448 - GCA ZBTB11 In_Frame_Ins p.A328dup 0.19 TCGA-66-2789-01 3 108147539 108147539 G T MYH15 Silent p.R1188R 0.24 TCGA-66-2789-01 3 111368705 111368705 G T CD96 3'UTR 0.27 TCGA-66-2789-01 3 113850162 113850162 T C DRD3 Missense_Mutation p.Q270R 0.28 tolerated(0.41) benign(0.038) TCGA-66-2789-01 3 121416536 121416536 C G GOLGB1 Missense_Mutation p.R945T 0.12 benign(0.055) TCGA-66-2789-01 3 122003472 122003472 C G CASR Missense_Mutation p.R901G 0.46 deleterious_low_confidence(0) benign(0.212) TCGA-66-2789-01 3 125831645 125831645 C G ALDH1L1 Missense_Mutation p.D731H 0.14 deleterious(0) possibly_damaging(0.576) TCGA-66-2789-01 3 126748891 126748891 G T PLXNA1 Missense_Mutation p.R1682L 0.17 deleterious(0) probably_damaging(0.999) TCGA-66-2789-01 3 137881387 137881387 C A DBR1 Missense_Mutation p.V327L 0.13 deleterious(0.03) benign(0.057) TCGA-66-2789-01 3 138762826 138762826 G A PRR23C Missense_Mutation p.P213S 0.13 tolerated(0.53) probably_damaging(0.999) TCGA-66-2789-01 3 14489188 14489188 A G SLC6A6 Missense_Mutation p.K155E 0.28 tolerated(0.16) benign(0.013) TCGA-66-2789-01 3 14695956 14695956 C G CCDC174 Silent p.L22L 0.14 TCGA-66-2789-01 3 150874031 150874031 G T MED12L Missense_Mutation p.D214Y 0.11 deleterious(0.03) possibly_damaging(0.493) TCGA-66-2789-01 3 157820671 157820671 G A SHOX2 Silent p.S141S 0.14 TCGA-66-2789-01 3 183454574 183454574 A T YEATS2 Missense_Mutation p.K294M 0.12 deleterious(0) possibly_damaging(0.595) TCGA-66-2789-01 3 188956624 188956624 G T TPRG1 Silent p.L135L 0.25 TCGA-66-2789-01 3 190126254 190126254 G C CLDN16 Missense_Mutation p.L248F 0.12 deleterious(0.01) probably_damaging(0.948) TCGA-66-2789-01 3 193130151 193130151 T A ATP13A4 Silent p.T1008T 0.24 TCGA-66-2789-01 3 194062580 194062580 G A CPN2 Silent p.L284L 0.11 TCGA-66-2789-01 3 197670685 197670685 C A IQCG Missense_Mutation p.M82I 0.12 tolerated(0.07) benign(0.2) TCGA-66-2789-01 3 28373873 28373873 G C AZI2 Missense_Mutation p.L212V 0.46 tolerated(0.52) benign(0.006) TCGA-66-2789-01 3 30713401 30713401 G A TGFBR2 Silent p.L267L 0.58 TCGA-66-2789-01 3 33195275 33195275 T C SUSD5 Silent p.S283S 0.56 TCGA-66-2789-01 3 35730842 35730842 C A ARPP21 Missense_Mutation p.H150Q 0.46 deleterious(0) probably_damaging(0.91) TCGA-66-2789-01 3 35770811 35770811 C T ARPP21 Silent p.S380S 0.36 TCGA-66-2789-01 3 4683776 4683776 G T ITPR1 Splice_Site p.X123_splice 0.46 TCGA-66-2789-01 3 73433401 73433401 C A PDZRN3 Missense_Mutation p.E772D 0.27 tolerated(0.49) benign(0.02) TCGA-66-2789-01 3 74313472 74313472 T C CNTN3 3'UTR 0.62 TCGA-66-2789-01 3 74413749 74413749 T A CNTN3 Splice_Site p.X362_splice 0.31 TCGA-66-2789-01 4 10089385 10089385 C - WDR1 Frame_Shift_Del p.Y300Tfs*27 0.41 TCGA-66-2789-01 4 113462282 113462282 G A C4orf21 Missense_Mutation p.T1914I 0.28 deleterious(0) probably_damaging(0.984) TCGA-66-2789-01 4 114195750 114195750 T C ANK2 Missense_Mutation p.V543A 0.23 possibly_damaging(0.749) TCGA-66-2789-01 4 1206732 1206732 C A CTBP1 Missense_Mutation p.V370L 0.17 tolerated(0.17) benign(0.003) TCGA-66-2789-01 4 123542049 123542049 G T IL21 Missense_Mutation p.R40S 0.16 tolerated(0.12) benign(0.048) TCGA-66-2789-01 4 156135368 156135368 G T NPY2R Missense_Mutation p.A93S 0.12 deleterious(0) probably_damaging(0.992) TCGA-66-2789-01 4 158224786 158224786 C T GRIA2 Silent p.C104C 0.20 TCGA-66-2789-01 4 159590809 159590809 C G C4orf46 Missense_Mutation p.D100H 0.23 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-66-2789-01 4 160251607 160251607 A G RAPGEF2 Missense_Mutation p.K314R 0.18 tolerated(0.41) benign(0.008) TCGA-66-2789-01 4 162697178 162697178 A G FSTL5 Missense_Mutation p.L153S 0.29 deleterious(0) benign(0.157) TCGA-66-2789-01 4 162697198 162697198 G T FSTL5 Missense_Mutation p.S146R 0.22 tolerated(0.48) benign(0.02) TCGA-66-2789-01 4 16504232 16504232 G T LDB2 3'UTR 0.27 TCGA-66-2789-01 4 16504233 16504233 G T LDB2 3'UTR 0.27 TCGA-66-2789-01 4 175897228 175897228 T A ADAM29 Silent p.T184T 0.32 TCGA-66-2789-01 4 20618590 20618590 C A SLIT2 Missense_Mutation p.T1302N 0.17 tolerated(0.13) possibly_damaging(0.744) TCGA-66-2789-01 4 40123482 40123482 C T N4BP2 Missense_Mutation p.P1251S 0.21 tolerated(0.59) benign(0.018) TCGA-66-2789-01 4 47514816 47514816 G C ATP10D Missense_Mutation p.V87L 0.24 tolerated(1) benign(0.005) TCGA-66-2789-01 4 47682236 47682236 C G CORIN Missense_Mutation p.D352H 0.27 deleterious(0.01) probably_damaging(0.995) TCGA-66-2789-01 4 66231739 66231739 T C EPHA5 Missense_Mutation p.H654R 0.42 tolerated(0.12) benign(0.034) TCGA-66-2789-01 4 69816854 69816854 C G UGT2A3 Missense_Mutation p.V209L 0.32 tolerated(0.36) benign(0.107) TCGA-66-2789-01 4 71509397 71509397 G A ENAM Missense_Mutation p.A752T 0.29 tolerated(0.06) benign(0.102) TCGA-66-2789-01 4 86295 86295 G C Z95704.2 RNA 0.27 TCGA-66-2789-01 5 115336143 115336143 C A AQPEP Missense_Mutation p.A510D 0.25 deleterious(0.02) possibly_damaging(0.52) TCGA-66-2789-01 5 115336144 115336144 C A AQPEP Silent p.A510A 0.26 TCGA-66-2789-01 5 137621721 137621721 G A CDC25C Missense_Mutation p.P421L 0.28 tolerated(0.36) benign(0.06) TCGA-66-2789-01 5 137878583 137878583 C T ETF1 Missense_Mutation p.D9N 0.55 tolerated(0.21) probably_damaging(0.999) TCGA-66-2789-01 5 140176677 140176677 C T PCDHA2 Silent p.L710L 0.28 TCGA-66-2789-01 5 140182453 140182453 C T PCDHA3 Silent p.D557D 0.33 TCGA-66-2789-01 5 140966626 140966626 G C DIAPH1 Missense_Mutation p.L95V 0.34 unknown(0) TCGA-66-2789-01 5 148577924 148577924 C A ABLIM3 Silent p.G98G 0.36 TCGA-66-2789-01 5 161128573 161128573 G T GABRA6 Nonsense_Mutation p.E386* 0.47 TCGA-66-2789-01 5 21760770 21760770 G T CDH12 Silent p.V510V 0.20 TCGA-66-2789-01 5 21975451 21975451 G T CDH12 Missense_Mutation p.T92N 0.19 deleterious(0.01) probably_damaging(0.956) TCGA-66-2789-01 5 22078648 22078648 C A CDH12 Silent p.R46R 0.20 TCGA-66-2789-01 5 225549 225549 G T SDHA Missense_Mutation p.A110S 0.21 tolerated_low_confidence(0.14) probably_damaging(0.981) TCGA-66-2789-01 5 24487714 24487714 G A CDH10 3'UTR 0.13 TCGA-66-2789-01 5 33936910 33936910 C G RXFP3 Missense_Mutation p.A22G 0.14 deleterious_low_confidence(0.01) benign(0.049) TCGA-66-2789-01 5 35954480 35954480 C A UGT3A1 Missense_Mutation p.G466W 0.23 deleterious(0) probably_damaging(0.987) TCGA-66-2789-01 5 35965865 35965865 C T UGT3A1 Missense_Mutation p.E156K 0.23 deleterious(0.01) probably_damaging(1) TCGA-66-2789-01 5 36035849 36035849 C T UGT3A2 Missense_Mutation p.G508D 0.19 tolerated(0.13) probably_damaging(0.915) TCGA-66-2789-01 5 40852718 40852718 G T CARD6 Silent p.V428V 0.23 TCGA-66-2789-01 5 40972654 40972654 A G C7 Missense_Mutation p.K678E 0.13 deleterious(0.02) possibly_damaging(0.771) TCGA-66-2789-01 5 482830 482830 G T SLC9A3 Missense_Mutation p.R397S 0.41 deleterious(0) probably_damaging(1) TCGA-66-2789-01 5 6620312 6620312 T C NSUN2 Missense_Mutation p.H241R 0.13 deleterious(0) probably_damaging(0.997) TCGA-66-2789-01 5 6755026 6755026 C G PAPD7 Missense_Mutation p.R533G 0.37 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-66-2789-01 5 68661332 68661332 C A TAF9 Missense_Mutation p.R78L 0.26 tolerated(0.05) possibly_damaging(0.498) TCGA-66-2789-01 6 101307057 101307057 T G ASCC3 Intron 0.25 TCGA-66-2789-01 6 105825364 105825364 C G PREP Missense_Mutation p.V51L 0.30 tolerated(0.3) benign(0) TCGA-66-2789-01 6 106973217 106973217 T A AIM1 Silent p.S1048S 0.32 TCGA-66-2789-01 6 132891957 132891957 C A TAAR6 Missense_Mutation p.A166D 0.35 deleterious(0.02) possibly_damaging(0.493) TCGA-66-2789-01 6 135300358 135300358 T C HBS1L Missense_Mutation p.H549R 0.18 deleterious(0.01) probably_damaging(0.969) TCGA-66-2789-01 6 148865626 148865626 C T SASH1 Missense_Mutation p.P1007L 0.45 tolerated_low_confidence(0.77) benign(0) TCGA-66-2789-01 6 152527420 152527420 C T SYNE1 Silent p.S7634S 0.24 TCGA-66-2789-01 6 157744615 157744615 G T TMEM242 5'UTR 0.31 TCGA-66-2789-01 6 30071294 30071294 C A TRIM31 3'UTR 0.37 TCGA-66-2789-01 6 43479754 43479754 C T YIPF3 3'UTR 0.35 TCGA-66-2789-01 6 55620414 55620414 A G BMP5 Missense_Mutation p.S428P 0.48 deleterious(0) probably_damaging(0.998) TCGA-66-2789-01 6 56335002 56335002 T A DST Missense_Mutation p.Y4844F 0.53 probably_damaging(0.998) TCGA-66-2789-01 6 74192243 74192243 G A MTO1 Missense_Mutation p.E553K 0.31 tolerated(0.12) possibly_damaging(0.864) TCGA-66-2789-01 6 8015828 8015828 C T BLOC1S5 3'UTR 0.37 TCGA-66-2789-01 6 83905545 83905545 T C RWDD2A Missense_Mutation p.S145P 0.38 tolerated(0.12) benign(0.014) TCGA-66-2789-01 6 88173891 88173891 G T C6ORF165 Missense_Mutation p.A598S 0.28 tolerated(0.19) benign(0.024) TCGA-66-2789-01 6 96651800 96651800 C T FUT9 Silent p.L257L 0.28 TCGA-66-2789-01 7 111462506 111462506 G A DOCK4 Silent p.L948L 0.21 TCGA-66-2789-01 7 122114483 122114483 G A CADPS2 Silent p.L650L 0.19 TCGA-66-2789-01 7 129764369 129764369 A T KLHDC10 Missense_Mutation p.L286F 0.26 tolerated(0.36) benign(0.151) TCGA-66-2789-01 7 149482226 149482226 G C SSPO RNA 0.29 TCGA-66-2789-01 7 150773153 150773153 C T SLC4A2 Silent p.A1175A 0.32 TCGA-66-2789-01 7 151962221 151962221 A T KMT2C Nonsense_Mutation p.C362* 0.06 TCGA-66-2789-01 7 21757518 21757518 C G DNAH11 Nonsense_Mutation p.S2377* 0.31 TCGA-66-2789-01 7 23775399 23775399 G T STK31 Missense_Mutation p.L242F 0.21 tolerated(0.16) benign(0.439) TCGA-66-2789-01 7 30951557 30951557 G T AQP1 Missense_Mutation p.W11C 0.26 deleterious(0.03) probably_damaging(1) TCGA-66-2789-01 7 38402737 38402737 A T TRGV2 Missense_Mutation p.S28T 0.26 tolerated(0.42) benign(0.287) TCGA-66-2789-01 7 43906368 43906368 T C MRPS24 Missense_Mutation p.Y145C 0.27 deleterious(0.02) possibly_damaging(0.584) TCGA-66-2789-01 7 44099661 44099661 T C DBNL Silent p.G363G 0.21 TCGA-66-2789-01 7 48556400 48556400 C A ABCA13 Missense_Mutation p.L4574I 0.21 possibly_damaging(0.906) TCGA-66-2789-01 7 55238394 55238394 G T EGFR Intron 0.35 TCGA-66-2789-01 7 73803459 73803459 G T CLIP2 Nonsense_Mutation p.E864* 0.16 TCGA-66-2789-01 7 8124623 8124623 G C GLCCI1 Missense_Mutation p.R425P 0.20 deleterious(0) benign(0.011) TCGA-66-2789-01 7 81624184 81624184 C T CACNA2D1 Silent p.E578E 0.22 TCGA-66-2789-01 7 94035032 94035032 C A COL1A2 Silent p.G178G 0.21 TCGA-66-2789-01 7 99381709 99381709 A G CYP3A4 5'UTR 0.31 TCGA-66-2789-01 8 101563527 101563527 A C ANKRD46 Intron 0.50 TCGA-66-2789-01 8 110489571 110489571 C A PKHD1L1 Missense_Mutation p.P3012H 0.24 deleterious(0) probably_damaging(0.969) TCGA-66-2789-01 8 113304900 113304900 C G CSMD3 Missense_Mutation p.R2885T 0.24 tolerated(0.4) possibly_damaging(0.9) TCGA-66-2789-01 8 121259859 121259859 C A COL14A1 Silent p.S829S 0.33 TCGA-66-2789-01 8 139790639 139790639 C G COL22A1 Missense_Mutation p.G572A 0.39 unknown(0) TCGA-66-2789-01 8 139790640 139790640 C A COL22A1 Nonsense_Mutation p.G572* 0.37 TCGA-66-2789-01 8 142367017 142367017 C T GPR20 Missense_Mutation p.G336D 0.18 tolerated(0.22) benign(0.319) TCGA-66-2789-01 8 143961141 143961141 C T CYP11B1 Missense_Mutation p.R30Q 0.42 tolerated(0.6) benign(0) TCGA-66-2789-01 8 145692606 145692606 G T KIFC2 Silent p.L117L 0.48 TCGA-66-2789-01 8 19687965 19687965 G T INTS10 Missense_Mutation p.V397L 0.41 tolerated(0.41) benign(0.001) TCGA-66-2789-01 8 19687967 19687967 A T INTS10 Silent p.V397V 0.41 TCGA-66-2789-01 8 38008297 38008297 A C STAR Missense_Mutation p.Y14D 0.04 deleterious(0.01) possibly_damaging(0.675) TCGA-66-2789-01 8 38105316 38105316 A G DDHD2 Missense_Mutation p.D404G 0.13 deleterious(0.04) benign(0.155) TCGA-66-2789-01 8 38205604 38205604 C T WHSC1L1 Missense_Mutation p.R29H 0.14 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-66-2789-01 8 39694659 39694659 G A ADAM2 Missense_Mutation p.S43L 0.05 deleterious(0.03) benign(0.148) TCGA-66-2789-01 8 48743256 48743256 G C PRKDC Silent p.V2768V 0.14 TCGA-66-2789-01 8 56866519 56866519 G C LYN Missense_Mutation p.G256R 0.20 deleterious(0) probably_damaging(0.988) TCGA-66-2789-01 8 62212665 62212665 C A CLVS1 Silent p.L93L 0.44 TCGA-66-2789-01 8 77616888 77616888 C A ZFHX4 Missense_Mutation p.P189T 0.14 possibly_damaging(0.803) TCGA-66-2789-01 8 86240744 86240744 G C CA1 3'UTR 0.13 TCGA-66-2789-01 8 89130996 89130996 G T MMP16 Nonsense_Mutation p.Y268* 0.43 TCGA-66-2789-01 8 97247862 97247862 T C UQCRB 5'Flank 0.60 TCGA-66-2789-01 8 98737044 98737044 T C MTDH 3'UTR 0.25 TCGA-66-2789-01 9 108366570 108366570 C T FKTN Silent p.D148D 0.45 TCGA-66-2789-01 9 130829398 130829398 C G NAIF1 5'UTR 0.44 TCGA-66-2789-01 9 134955031 134955031 G C MED27 Silent p.L67L 0.25 TCGA-66-2789-01 9 139412360 139412360 A T NOTCH1 Missense_Mutation p.C429S 0.73 deleterious(0) probably_damaging(0.997) TCGA-66-2789-01 9 139413085 139413085 G A NOTCH1 Missense_Mutation p.R353C 0.45 deleterious(0) probably_damaging(1) TCGA-66-2789-01 9 139565062 139565062 A T EGFL7 Intron 0.67 TCGA-66-2789-01 9 17409420 17409420 A G CNTLN Silent p.Q915Q 0.33 TCGA-66-2789-01 9 35377549 35377549 G T UNC13B Missense_Mutation p.R558L 0.44 deleterious(0) possibly_damaging(0.727) TCGA-66-2789-01 9 464218 464218 A T DOCK8 Nonstop_Mutation p.*2100Lext*32 0.35 TCGA-66-2789-01 9 5431953 5431953 T C PLGRKT Missense_Mutation p.M9V 0.33 tolerated(0.15) benign(0.132) TCGA-66-2789-01 9 92011737 92011737 T C SEMA4D Missense_Mutation p.N110S 0.36 deleterious(0) probably_damaging(1) TCGA-66-2789-01 9 97062614 97062614 G T ZNF169 Silent p.G258G 0.24 TCGA-66-2789-01 X 100503557 100503557 G C DRP2 Missense_Mutation p.L503F 0.50 deleterious(0) probably_damaging(1) TCGA-66-2789-01 X 12735105 12735105 G T FRMPD4 Missense_Mutation p.D843Y 0.55 deleterious(0) possibly_damaging(0.806) TCGA-66-2789-01 X 135631089 135631089 G A VGLL1 Missense_Mutation p.A186T 0.63 tolerated(0.71) benign(0.006) TCGA-66-2789-01 X 136113576 136113576 G - GPR101 Frame_Shift_Del p.W87Gfs*57 0.48 TCGA-66-2789-01 X 147030327 147030327 T A FMR1 Missense_Mutation p.V621E 0.53 tolerated_low_confidence(0.31) benign(0.017) TCGA-66-2789-01 X 150912443 150912443 G C CNGA2 Missense_Mutation p.E490Q 0.50 deleterious(0) probably_damaging(1) TCGA-66-2789-01 X 153051742 153051742 A C IDH3G Intron 0.54 TCGA-66-2789-01 X 40539210 40539210 C T MED14 Missense_Mutation p.R929Q 0.19 tolerated(0.07) benign(0.037) TCGA-66-2789-01 X 50136227 50136227 G T DGKK RNA 0.54 TCGA-66-2789-01 X 73069027 73069027 G C XIST RNA 0.58 TCGA-66-2789-01 X 91132500 91132500 G T PCDH11X Missense_Mutation p.A421S 0.46 tolerated(1) benign(0.402) TCGA-66-2789-01 Y 23702602 23702602 C A RBMY1A1 Missense_Mutation p.S111Y 0.10 tolerated(1) possibly_damaging(0.484) TCGA-66-2791-01 10 101636941 101636941 G A DNMBP Silent p.P1567P 0.42 TCGA-66-2791-01 10 103343256 103343256 G A POLL Intron 0.28 TCGA-66-2791-01 10 103901552 103901552 C T PPRC1 Missense_Mutation p.A1096V 0.40 tolerated_low_confidence(0.23) benign(0.013) TCGA-66-2791-01 10 108447979 108447979 G T SORCS1 Missense_Mutation p.L511I 0.31 deleterious(0.04) benign(0.382) TCGA-66-2791-01 10 115534730 115534730 C A PLEKHS1 Missense_Mutation p.Q303K 0.35 tolerated(0.17) benign(0.355) TCGA-66-2791-01 10 126094046 126094046 C A OAT Nonsense_Mutation p.G203* 0.28 TCGA-66-2791-01 10 16893278 16893278 C - CUBN Frame_Shift_Del p.E3207Rfs*14 0.16 TCGA-66-2791-01 10 18834976 18834976 C A NSUN6 Silent p.P432P 0.18 TCGA-66-2791-01 10 21959505 21959505 C G MLLT10 Nonsense_Mutation p.S308* 0.31 TCGA-66-2791-01 10 23622020 23622020 A T C10orf67 Missense_Mutation p.L101M 0.22 tolerated(0.16) probably_damaging(0.935) TCGA-66-2791-01 10 38484567 38484567 C G RP11-508N22.8 RNA 0.36 TCGA-66-2791-01 10 63852295 63852295 G A ARID5B Missense_Mutation p.G1025R 0.36 deleterious(0.03) probably_damaging(0.987) TCGA-66-2791-01 10 85972907 85972907 G A CDHR1 Missense_Mutation p.E615K 0.18 tolerated(0.36) possibly_damaging(0.665) TCGA-66-2791-01 10 88769708 88769708 G A RP11-96C23.10 Intron 0.29 TCGA-66-2791-01 11 111745966 111745967 - A FDXACB1 Frame_Shift_Ins p.V519Cfs*9 0.17 TCGA-66-2791-01 11 113102448 113102448 G T NCAM1 Nonsense_Mutation p.G440* 0.18 TCGA-66-2791-01 11 113222836 113222836 C T TTC12 Silent p.C451C 0.27 TCGA-66-2791-01 11 126146370 126146370 C A FOXRED1 Silent p.R351R 0.13 TCGA-66-2791-01 11 129762615 129762615 C A NFRKB Nonsense_Mutation p.E57* 0.15 TCGA-66-2791-01 11 17332502 17332502 C T NUCB2 Missense_Mutation p.S205F 0.08 deleterious(0.02) benign(0.278) TCGA-66-2791-01 11 17332538 17332538 A C NUCB2 Missense_Mutation p.H217P 0.10 deleterious(0) probably_damaging(0.995) TCGA-66-2791-01 11 20691260 20691260 C A NELL1 5'UTR 0.14 TCGA-66-2791-01 11 24753661 24753661 C A LUZP2 Intron 0.28 TCGA-66-2791-01 11 32975556 32975556 C G QSER1 Nonsense_Mutation p.S1315* 0.27 TCGA-66-2791-01 11 34680084 34680084 G C EHF Silent p.P226P 0.18 TCGA-66-2791-01 11 4104625 4104625 C G STIM1 Missense_Mutation p.D457E 0.20 deleterious(0.02) benign(0.371) TCGA-66-2791-01 11 43911303 43911303 G C ALKBH3 Missense_Mutation p.V99L 0.24 tolerated(0.33) benign(0) TCGA-66-2791-01 11 4621770 4621770 C T TRIM68 Silent p.L398L 0.18 TCGA-66-2791-01 11 55135797 55135797 G T OR4A15 Missense_Mutation p.M146I 0.17 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-66-2791-01 11 55418439 55418439 G T OR4S2 Missense_Mutation p.E20D 0.20 tolerated(0.22) benign(0.11) TCGA-66-2791-01 11 55541234 55541234 C A OR5D13 Nonsense_Mutation p.C107* 0.20 TCGA-66-2791-01 11 55579243 55579243 T C OR5L1 Missense_Mutation p.F101L 0.23 tolerated(0.12) benign(0.053) TCGA-66-2791-01 11 57367679 57367679 G A SERPING1 Missense_Mutation p.V127I 0.22 tolerated(0.24) benign(0) TCGA-66-2791-01 11 58034512 58034512 G T OR10W1 Silent p.T273T 0.24 TCGA-66-2791-01 11 58034871 58034871 T A OR10W1 Missense_Mutation p.I154F 0.17 deleterious(0) probably_damaging(0.911) TCGA-66-2791-01 11 58034879 58034879 A C OR10W1 Missense_Mutation p.V151G 0.30 deleterious(0) benign(0.052) TCGA-66-2791-01 11 59282787 59282787 C G OR4D9 Silent p.T134T 0.18 TCGA-66-2791-01 11 59623397 59623397 C A TCN1 Silent p.L294L 0.14 TCGA-66-2791-01 11 63978760 63978760 A G FERMT3 Silent p.A176A 0.18 TCGA-66-2791-01 11 65269052 65269052 G C MALAT1 RNA 0.07 TCGA-66-2791-01 11 67372302 67372302 G T C11orf72 Missense_Mutation p.A80D 0.23 possibly_damaging(0.82) TCGA-66-2791-01 11 68748108 68748108 C T MRGPRD Silent p.L116L 0.23 TCGA-66-2791-01 11 68748447 68748447 C G MRGPRD Missense_Mutation p.Q3H 0.13 tolerated(0.17) benign(0.013) TCGA-66-2791-01 11 68748456 68748456 C T MRGPRD 5'Flank 0.14 TCGA-66-2791-01 11 71850891 71850891 C A FOLR3 3'UTR 0.27 TCGA-66-2791-01 11 72945520 72945520 T A P2RY2 Missense_Mutation p.C106S 0.21 deleterious(0) probably_damaging(1) TCGA-66-2791-01 11 85431949 85431949 T A SYTL2 Missense_Mutation p.R827W 0.17 deleterious(0) probably_damaging(1) TCGA-66-2791-01 11 93545108 93545108 G T MED17 Missense_Mutation p.D612Y 0.19 deleterious(0) probably_damaging(0.972) TCGA-66-2791-01 12 108169032 108169032 C A ASCL4 Missense_Mutation p.P14T 0.25 deleterious(0) probably_damaging(0.913) TCGA-66-2791-01 12 109052593 109052593 C T CORO1C Missense_Mutation p.R184Q 0.25 tolerated(0.25) benign(0.055) TCGA-66-2791-01 12 10958656 10958656 C T TAS2R8 Missense_Mutation p.M308I 0.24 tolerated(0.26) benign(0.001) TCGA-66-2791-01 12 109698427 109698427 G T ACACB Silent p.P2213P 0.18 TCGA-66-2791-01 12 11150207 11150207 C T TAS2R20 Missense_Mutation p.V90I 0.22 tolerated(0.22) benign(0.252) TCGA-66-2791-01 12 120789151 120789151 A G MSI1 Silent p.L262L 0.52 TCGA-66-2791-01 12 124163813 124163813 G A TCTN2 Missense_Mutation p.D181N 0.31 deleterious(0) probably_damaging(0.912) TCGA-66-2791-01 12 21695500 21695500 G - GYS2 Frame_Shift_Del p.S526Vfs*2 0.19 TCGA-66-2791-01 12 32145370 32145370 A G KIAA1551 Silent p.L1715L 0.26 TCGA-66-2791-01 12 46582748 46582748 G A SLC38A1 3'UTR 0.16 TCGA-66-2791-01 12 5153731 5153731 C G KCNA5 Missense_Mutation p.Q140E 0.16 deleterious(0.01) probably_damaging(0.983) TCGA-66-2791-01 12 56554551 56554551 T A MYL6 Intron 0.25 TCGA-66-2791-01 12 56713650 56713650 C T PAN2 Missense_Mutation p.E986K 0.19 deleterious(0.04) benign(0.033) TCGA-66-2791-01 12 78522538 78522538 C T NAV3 Missense_Mutation p.R1445C 0.25 deleterious(0) probably_damaging(0.999) TCGA-66-2791-01 12 80650165 80650165 G C OTOGL Missense_Mutation p.D537H 0.14 deleterious(0) probably_damaging(0.996) TCGA-66-2791-01 12 96387243 96387243 C A HAL Missense_Mutation p.R192L 0.19 tolerated(0.28) probably_damaging(0.989) TCGA-66-2791-01 13 101753194 101753194 C T NALCN Missense_Mutation p.G1035R 0.24 deleterious(0) probably_damaging(1) TCGA-66-2791-01 13 103528079 103528079 G T ERCC5 Silent p.S1129S 0.41 TCGA-66-2791-01 13 108861558 108861558 C A LIG4 Missense_Mutation p.G687C 0.38 deleterious(0) probably_damaging(1) TCGA-66-2791-01 13 21976986 21976986 T C ZDHHC20 Silent p.K130K 0.21 TCGA-66-2791-01 13 23906130 23906130 A G SACS Missense_Mutation p.I3962T 0.32 benign(0.001) TCGA-66-2791-01 13 33110164 33110164 T C N4BP2L2 Intron 0.25 TCGA-66-2791-01 13 37679333 37679333 G C CSNK1A1L Missense_Mutation p.R21G 0.34 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-66-2791-01 13 38934882 38934882 G A UFM1 Silent p.R75R 0.21 TCGA-66-2791-01 13 78492262 78492262 C A EDNRB Silent p.L239L 0.24 TCGA-66-2791-01 13 96086145 96086145 G A CLDN10 Missense_Mutation p.V20I 0.36 tolerated(0.4) benign(0.002) TCGA-66-2791-01 13 99452707 99452707 C G DOCK9 Missense_Mutation p.K1931N 0.20 deleterious(0) probably_damaging(0.999) TCGA-66-2791-01 14 20216032 20216032 G C OR4Q3 Missense_Mutation p.C149S 0.12 tolerated(1) benign(0.072) TCGA-66-2791-01 14 20248958 20248958 G C OR4M1 Missense_Mutation p.Q159H 0.07 deleterious(0.03) probably_damaging(0.926) TCGA-66-2791-01 14 20444613 20444613 G C OR4K15 Silent p.T312T 0.28 TCGA-66-2791-01 14 23945346 23945346 G T NGDN Missense_Mutation p.V177F 0.19 deleterious(0.01) probably_damaging(0.949) TCGA-66-2791-01 14 30107914 30107914 C A PRKD1 Missense_Mutation p.G298V 0.11 deleterious(0) probably_damaging(0.997) TCGA-66-2791-01 14 33291286 33291286 C T AKAP6 Missense_Mutation p.P1423S 0.21 tolerated_low_confidence(0.78) benign(0.027) TCGA-66-2791-01 14 36219896 36219896 T A RALGAPA1 Missense_Mutation p.D268V 0.21 deleterious(0.03) possibly_damaging(0.697) TCGA-66-2791-01 14 42356584 42356584 G C LRFN5 Missense_Mutation p.R252S 0.21 deleterious(0) probably_damaging(0.996) TCGA-66-2791-01 14 44973864 44973864 A T FSCB Missense_Mutation p.V776D 0.22 tolerated(0.68) unknown(0) TCGA-66-2791-01 14 53120022 53120022 C G ERO1L Missense_Mutation p.E274Q 0.26 tolerated(0.46) benign(0.047) TCGA-66-2791-01 14 64692225 64692225 A G SYNE2 Missense_Mutation p.N6902S 0.17 possibly_damaging(0.792) TCGA-66-2791-01 14 70171368 70171368 G A KIAA0247 Missense_Mutation p.A123T 0.23 deleterious(0.01) possibly_damaging(0.873) TCGA-66-2791-01 14 73238469 73238469 G C DPF3 Missense_Mutation p.I55M 0.21 deleterious(0) possibly_damaging(0.844) TCGA-66-2791-01 14 76238093 76238099 ATAGCAT - TTLL5 Frame_Shift_Del p.I678Sfs*12 0.14 TCGA-66-2791-01 14 77987879 77987879 C T SPTLC2 Missense_Mutation p.R450K 0.14 deleterious(0.01) possibly_damaging(0.773) TCGA-66-2791-01 14 88857754 88857754 G T SPATA7 Missense_Mutation p.G17C 0.25 deleterious(0) probably_damaging(0.94) TCGA-66-2791-01 14 94420769 94420769 C A ASB2 Missense_Mutation p.M124I 0.16 tolerated(0.08) benign(0.232) TCGA-66-2791-01 15 22369360 22369360 G T OR4M2 Missense_Mutation p.R262L 0.18 tolerated(0.09) benign(0.042) TCGA-66-2791-01 15 22382912 22382912 C A OR4N4 Missense_Mutation p.A147D 0.17 deleterious(0) possibly_damaging(0.772) TCGA-66-2791-01 15 24924184 24924184 C G NPAP1 Missense_Mutation p.A1057G 0.24 deleterious_low_confidence(0.01) benign(0.001) TCGA-66-2791-01 15 43827208 43827208 C A PPIP5K1 Missense_Mutation p.E1322D 0.32 tolerated_low_confidence(0.06) benign(0.002) TCGA-66-2791-01 15 43903132 43903132 C T STRC Silent p.V1119V 0.19 TCGA-66-2791-01 15 75189482 75189482 C A MPI Silent p.L325L 0.25 TCGA-66-2791-01 15 75195106 75195106 G T FAM219B Silent p.R151R 0.21 TCGA-66-2791-01 16 14989935 14989935 G T NOMO1 3'UTR 0.11 TCGA-66-2791-01 16 17211579 17211579 G T XYLT1 Missense_Mutation p.H827Q 0.13 tolerated(0.38) benign(0.222) TCGA-66-2791-01 16 20651905 20651905 T C ACSM1 Missense_Mutation p.I332V 0.22 deleterious(0) benign(0.122) TCGA-66-2791-01 16 24135245 24135245 G A PRKCB Silent p.R336R 0.19 TCGA-66-2791-01 16 28842045 28842045 C T ATXN2L Missense_Mutation p.R382C 0.29 deleterious(0.02) benign(0.007) TCGA-66-2791-01 16 28944602 28944602 C - CD19 Frame_Shift_Del p.P204Lfs*23 0.36 TCGA-66-2791-01 16 28994515 28994515 C T SPNS1 Silent p.Y408Y 0.25 TCGA-66-2791-01 16 3544563 3544563 G A C16orf90 Silent p.L121L 0.16 TCGA-66-2791-01 16 47196508 47196508 C T ITFG1 Silent p.R507R 0.18 TCGA-66-2791-01 16 57712152 57712152 G A GPR97 Missense_Mutation p.R139Q 0.16 tolerated(0.76) benign(0.003) TCGA-66-2791-01 16 61851395 61851395 G T CDH8 Missense_Mutation p.S422Y 0.12 deleterious(0) benign(0.355) TCGA-66-2791-01 16 67701881 67701881 G A C16orf86 Missense_Mutation p.E145K 0.16 deleterious(0) possibly_damaging(0.486) TCGA-66-2791-01 16 71510125 71510125 C G ZNF19 Missense_Mutation p.E109Q 0.14 tolerated(0.1) possibly_damaging(0.601) TCGA-66-2791-01 16 72166752 72166752 C G PMFBP1 Missense_Mutation p.A448P 0.15 tolerated(0.18) possibly_damaging(0.653) TCGA-66-2791-01 16 7383002 7383002 C G RBFOX1 5'UTR 0.18 TCGA-66-2791-01 16 75563809 75563809 G T CHST5 Missense_Mutation p.S158R 0.19 tolerated(0.2) possibly_damaging(0.644) TCGA-66-2791-01 16 81960723 81960724 - T PLCG2 Frame_Shift_Ins p.S821Ifs*21 0.22 TCGA-66-2791-01 16 8889772 8889772 C T TMEM186 3'UTR 0.25 TCGA-66-2791-01 17 10427107 10427107 G A MYH2 Missense_Mutation p.A1757V 0.27 deleterious(0.02) benign(0.075) TCGA-66-2791-01 17 18022930 18022930 A G MYO15A Silent p.P272P 0.23 TCGA-66-2791-01 17 33953725 33953725 G C AP2B1 Missense_Mutation p.E268Q 0.25 tolerated(0.07) benign(0.062) TCGA-66-2791-01 17 38183201 38183201 G A MED24 Silent p.I539I 0.21 TCGA-66-2791-01 17 39405965 39405965 C T KRTAP9-4 5'UTR 0.25 TCGA-66-2791-01 17 42289033 42289033 G A UBTF Nonsense_Mutation p.Q330* 0.25 TCGA-66-2791-01 17 42293285 42293285 T G UBTF Missense_Mutation p.K103Q 0.18 tolerated(0.07) probably_damaging(0.973) TCGA-66-2791-01 17 48244818 48244818 G A SGCA Missense_Mutation p.E43K 0.26 tolerated(0.05) benign(0.257) TCGA-66-2791-01 17 50235303 50235303 A G CA10 5'UTR 0.44 TCGA-66-2791-01 17 58260692 58260692 G C USP32 Silent p.L1319L 0.30 TCGA-66-2791-01 17 61902623 61902623 C G FTSJ3 Missense_Mutation p.E192Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-66-2791-01 17 61908527 61908527 C G PSMC5 Missense_Mutation p.R271G 0.22 deleterious(0) probably_damaging(0.985) TCGA-66-2791-01 17 66425064 66425064 G A WIPI1 Missense_Mutation p.P327S 0.26 tolerated(0.16) probably_damaging(0.974) TCGA-66-2791-01 17 66881394 66881394 G T ABCA8 Silent p.I1124I 0.19 TCGA-66-2791-01 17 73096607 73096607 C T SLC16A5 Silent p.S283S 0.25 TCGA-66-2791-01 17 7577547 7577547 C A TP53 Missense_Mutation p.G245V 0.23 deleterious(0) probably_damaging(1) TCGA-66-2791-01 17 78921039 78921039 G A RPTOR Nonsense_Mutation p.W1051* 0.22 TCGA-66-2791-01 17 8051027 8051027 C T PER1 Silent p.K451K 0.20 TCGA-66-2791-01 18 10696076 10696076 C T PIEZO2 Missense_Mutation p.E2283K 0.28 deleterious(0) benign(0.025) TCGA-66-2791-01 19 11545644 11545644 G T CCDC151 Missense_Mutation p.P65H 0.09 deleterious(0.01) possibly_damaging(0.779) TCGA-66-2791-01 19 12876760 12876760 T A HOOK2 Missense_Mutation p.Q527L 0.20 deleterious(0) benign(0.371) TCGA-66-2791-01 19 13476130 13476130 C T CACNA1A Splice_Site p.X262_splice 0.20 TCGA-66-2791-01 19 19823724 19823724 C G ZNF14 Missense_Mutation p.M122I 0.14 tolerated(1) benign(0.147) TCGA-66-2791-01 19 22157371 22157371 A T ZNF208 Missense_Mutation p.H155Q 0.15 tolerated(0.54) benign(0.226) TCGA-66-2791-01 19 22836129 22836129 T C ZNF492 5'UTR 0.20 TCGA-66-2791-01 19 23927115 23927115 T C ZNF681 Missense_Mutation p.K413E 0.26 deleterious(0.03) possibly_damaging(0.874) TCGA-66-2791-01 19 23991546 23991546 G T RPSAP58 5'UTR 0.22 TCGA-66-2791-01 19 37310031 37310031 C G ZNF790 Missense_Mutation p.W405C 0.14 tolerated(0.2) benign(0.005) TCGA-66-2791-01 19 38125867 38125867 G A ZFP30 3'UTR 0.18 TCGA-66-2791-01 19 43382240 43382240 G T PSG1 Missense_Mutation p.D85E 0.21 tolerated(0.09) benign(0.047) TCGA-66-2791-01 19 43414888 43414888 G C PSG6 Missense_Mutation p.Q184E 0.24 deleterious(0.02) possibly_damaging(0.657) TCGA-66-2791-01 19 43699169 43699169 G A PSG4 Silent p.D322D 0.22 TCGA-66-2791-01 19 43922108 43922108 G T TEX101 Missense_Mutation p.C175F 0.18 deleterious(0) probably_damaging(1) TCGA-66-2791-01 19 45781203 45781203 G C MARK4 Missense_Mutation p.R270T 0.10 deleterious(0) probably_damaging(0.96) TCGA-66-2791-01 19 46627176 46627176 C T IGFL3 Missense_Mutation p.C106Y 0.27 deleterious(0) probably_damaging(0.983) TCGA-66-2791-01 19 46811522 46811522 T A HIF3A Nonsense_Mutation p.C136* 0.23 TCGA-66-2791-01 19 49846557 49846557 C G TEAD2 Silent p.L340L 0.20 TCGA-66-2791-01 19 51628650 51628650 C A SIGLEC9 Missense_Mutation p.T140K 0.21 deleterious(0.02) possibly_damaging(0.849) TCGA-66-2791-01 19 53303738 53303738 G A ZNF28 Missense_Mutation p.L454F 0.23 deleterious(0.03) benign(0.329) TCGA-66-2791-01 19 54649754 54649754 C T CNOT3 Missense_Mutation p.P271L 0.25 deleterious(0) probably_damaging(0.995) TCGA-66-2791-01 19 54930341 54930341 G T TTYH1 Missense_Mutation p.G56C 0.29 deleterious(0.01) possibly_damaging(0.902) TCGA-66-2791-01 19 55687076 55687076 C T SYT5 Splice_Site p.X180_splice 0.26 TCGA-66-2791-01 19 56388478 56388478 T C NLRP4 Missense_Mutation p.V881A 0.28 deleterious(0.03) benign(0.248) TCGA-66-2791-01 19 56539152 56539152 G - NLRP5 Frame_Shift_Del p.R518Pfs*11 0.22 TCGA-66-2791-01 19 57642755 57642755 G T USP29 Missense_Mutation p.Q904H 0.21 deleterious(0.02) possibly_damaging(0.504) TCGA-66-2791-01 19 57646494 57646494 G C ZIM3 Nonsense_Mutation p.S404* 0.09 TCGA-66-2791-01 19 57911091 57911091 G A ZNF548 Missense_Mutation p.C491Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-66-2791-01 19 58190146 58190146 G T ZSCAN4 Missense_Mutation p.G392V 0.27 deleterious(0) probably_damaging(1) TCGA-66-2791-01 19 58578819 58578819 G A ZNF135 Missense_Mutation p.E347K 0.15 tolerated(0.08) probably_damaging(0.997) TCGA-66-2791-01 19 6422370 6422370 C A KHSRP Missense_Mutation p.K109N 0.19 deleterious(0.01) probably_damaging(0.991) TCGA-66-2791-01 19 9068085 9068085 G T MUC16 Missense_Mutation p.A6454E 0.17 unknown(0) TCGA-66-2791-01 19 9578918 9578918 A T ZNF560 Silent p.T235T 0.19 TCGA-66-2791-01 1 156020106 156020106 G C UBQLN4 Silent p.L239L 0.16 TCGA-66-2791-01 1 158813151 158813151 C A MNDA Silent p.P116P 0.24 TCGA-66-2791-01 1 159799840 159799840 C T SLAMF8 Silent p.R75R 0.27 TCGA-66-2791-01 1 160325486 160325486 T G NCSTN Missense_Mutation p.V465G 0.16 deleterious(0) benign(0.008) TCGA-66-2791-01 1 16256690 16256690 C T SPEN Nonsense_Mutation p.Q1319* 0.19 TCGA-66-2791-01 1 173880967 173880967 A G SERPINC1 Silent p.Y198Y 0.11 TCGA-66-2791-01 1 175360549 175360549 T G TNR Missense_Mutation p.Q461P 0.10 deleterious(0.04) probably_damaging(0.978) TCGA-66-2791-01 1 176738877 176738877 G A PAPPA2 Silent p.L1486L 0.26 TCGA-66-2791-01 1 177250597 177250597 C A BRINP2 Missense_Mutation p.S762Y 0.22 deleterious(0) possibly_damaging(0.692) TCGA-66-2791-01 1 179526328 179526328 G T NPHS2 Missense_Mutation p.A191D 0.21 deleterious(0) probably_damaging(0.989) TCGA-66-2791-01 1 180163472 180163472 C T QSOX1 Silent p.N471N 0.16 TCGA-66-2791-01 1 182544528 182544528 C T RNASEL Silent p.%3D 0.19 TCGA-66-2791-01 1 182572472 182572472 G A RGS16 Missense_Mutation p.A16V 0.15 deleterious(0) possibly_damaging(0.571) TCGA-66-2791-01 1 183857654 183857654 C T RGL1 Missense_Mutation p.S368L 0.15 deleterious(0) probably_damaging(0.993) TCGA-66-2791-01 1 192335237 192335237 T C RGS21 Missense_Mutation p.W148R 0.40 deleterious_low_confidence(0.05) probably_damaging(0.999) TCGA-66-2791-01 1 196876061 196876061 C T CFHR4 Silent p.D169D 0.15 TCGA-66-2791-01 1 197404369 197404369 C A CRB1 Missense_Mutation p.L1126I 0.36 tolerated(0.24) possibly_damaging(0.804) TCGA-66-2791-01 1 205495521 205495521 G T CDK18 Missense_Mutation p.A230S 0.10 tolerated(0.08) possibly_damaging(0.63) TCGA-66-2791-01 1 206944254 206944254 A G IL10 Missense_Mutation p.C126R 0.10 deleterious(0) probably_damaging(1) TCGA-66-2791-01 1 207649608 207649608 A G CR2 Missense_Mutation p.T916A 0.32 deleterious(0.01) benign(0.061) TCGA-66-2791-01 1 22166424 22166424 C T HSPG2 Silent p.V3200V 0.36 TCGA-66-2791-01 1 222833078 222833078 C A MIA3 Silent p.L1603L 0.37 TCGA-66-2791-01 1 226550831 226550831 G A PARP1 Silent p.S939S 0.17 TCGA-66-2791-01 1 229577773 229577773 C T NUP133 Missense_Mutation p.E1117K 0.09 tolerated(0.09) probably_damaging(0.973) TCGA-66-2791-01 1 229599292 229599292 G A NUP133 Nonsense_Mutation p.Q895* 0.09 TCGA-66-2791-01 1 233161104 233161104 C A PCNXL2 Missense_Mutation p.G1465C 0.31 deleterious(0) probably_damaging(0.97) TCGA-66-2791-01 1 247769158 247769158 A G OR2G3 Missense_Mutation p.T91A 0.31 deleterious(0.05) benign(0.014) TCGA-66-2791-01 1 248113057 248113057 C A OR2L8 Missense_Mutation p.L300M 0.37 tolerated(0.42) benign(0.247) TCGA-66-2791-01 1 248344097 248344097 G A OR2M2 Silent p.Q270Q 0.18 TCGA-66-2791-01 1 248525076 248525076 T G OR2T4 Missense_Mutation p.V65G 0.04 tolerated(0.17) benign(0.012) TCGA-66-2791-01 1 33363913 33363913 C G TMEM54 Silent p.L8L 0.15 TCGA-66-2791-01 1 34401376 34401376 G - CSMD2 Frame_Shift_Del p.L193Cfs*119 0.21 TCGA-66-2791-01 1 38197177 38197177 G A EPHA10 Silent p.T523T 0.33 TCGA-66-2791-01 1 49224681 49224681 T C BEND5 Silent p.V212V 0.35 TCGA-66-2791-01 1 74648474 74648474 A G LRRIQ3 Silent p.N107N 0.15 TCGA-66-2791-01 20 31830348 31830348 G T BPIFA1 3'UTR 0.26 TCGA-66-2791-01 20 57484238 57484238 G A GNAS Silent p.V827V 0.33 TCGA-66-2791-01 21 19666726 19666726 G A TMPRSS15 Missense_Mutation p.P783S 0.22 tolerated(0.35) benign(0.016) TCGA-66-2791-01 21 37610953 37610953 G C DOPEY2 Missense_Mutation p.E944Q 0.21 tolerated(0.08) possibly_damaging(0.682) TCGA-66-2791-01 22 18210399 18210399 C T BCL2L13 3'UTR 0.44 TCGA-66-2791-01 22 22707535 22707535 C T IGLV5-48 Silent p.C41C 0.12 TCGA-66-2791-01 22 25007072 25007072 G A GGT1 Silent p.L8L 0.36 TCGA-66-2791-01 22 28195045 28195045 C T MN1 Missense_Mutation p.G496D 0.25 probably_damaging(0.935) TCGA-66-2791-01 22 35713920 35713920 G C TOM1 Missense_Mutation p.E35Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-66-2791-01 22 37770023 37770023 C T ELFN2 Missense_Mutation p.E518K 0.31 tolerated(0.08) benign(0.158) TCGA-66-2791-01 22 43972302 43972302 T G EFCAB6 Missense_Mutation p.K1099Q 0.31 deleterious(0.01) probably_damaging(0.95) TCGA-66-2791-01 22 45607906 45607906 G T KIAA0930 Missense_Mutation p.D54E 0.48 deleterious(0) probably_damaging(1) TCGA-66-2791-01 2 109086257 109086257 G A GCC2 Missense_Mutation p.E158K 0.34 deleterious(0.01) benign(0.129) TCGA-66-2791-01 2 11767139 11767139 C T GREB1 Missense_Mutation p.A1453V 0.17 tolerated(1) benign(0.056) TCGA-66-2791-01 2 130951676 130951676 C T TUBA3E Missense_Mutation p.A247T 0.21 deleterious_low_confidence(0) possibly_damaging(0.649) TCGA-66-2791-01 2 159535159 159535159 G A PKP4 Missense_Mutation p.R1108Q 0.25 deleterious(0.03) possibly_damaging(0.863) TCGA-66-2791-01 2 166901684 166901684 C T SCN1A Missense_Mutation p.G511S 0.30 tolerated(0.47) possibly_damaging(0.755) TCGA-66-2791-01 2 172951530 172951530 T G DLX1 Silent p.A154A 0.25 TCGA-66-2791-01 2 176043809 176043809 C A ATP5G3 Missense_Mutation p.G97V 0.18 deleterious(0) probably_damaging(1) TCGA-66-2791-01 2 179247313 179247313 C T OSBPL6 Intron 0.40 TCGA-66-2791-01 2 179596503 179596503 A G TTN Missense_Mutation p.V5700A 0.13 TCGA-66-2791-01 2 180634369 180634369 C T ZNF385B Silent p.V38V 0.29 TCGA-66-2791-01 2 182438605 182438605 G A CERKL Missense_Mutation p.P163L 0.17 deleterious(0.01) benign(0.071) TCGA-66-2791-01 2 187615909 187615909 T A FAM171B Missense_Mutation p.I258K 0.27 deleterious(0) benign(0.211) TCGA-66-2791-01 2 213921675 213921675 G C IKZF2 Silent p.V96V 0.33 TCGA-66-2791-01 2 220039778 220039778 G A CNPPD1 Missense_Mutation p.R105W 0.36 deleterious(0) probably_damaging(1) TCGA-66-2791-01 2 226516205 226516205 C T NYAP2 Missense_Mutation p.P629L 0.38 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-66-2791-01 2 228881839 228881839 G T SPHKAP Missense_Mutation p.S1244Y 0.37 deleterious(0.01) probably_damaging(0.928) TCGA-66-2791-01 2 233704607 233704607 C G GIGYF2 Missense_Mutation p.Q960E 0.44 unknown(0) TCGA-66-2791-01 2 39294858 39294858 C G SOS1 Missense_Mutation p.D42H 0.17 deleterious(0) benign(0.145) TCGA-66-2791-01 2 61415429 61415429 C G USP34 Missense_Mutation p.L3483F 0.33 tolerated_low_confidence(0.27) benign(0.015) TCGA-66-2791-01 2 74699862 74699862 T A MRPL53 5'UTR 0.14 TCGA-66-2791-01 2 79365109 79365109 G T REG1P RNA 0.29 TCGA-66-2791-01 2 80530029 80530029 G T LRRTM1 Missense_Mutation p.L306M 0.17 deleterious(0) probably_damaging(0.999) TCGA-66-2791-01 2 89384782 89384782 G T IGKV3-15 Missense_Mutation p.P79Q 0.42 deleterious(0) probably_damaging(0.936) TCGA-66-2791-01 2 89384783 89384783 G C IGKV3-15 Missense_Mutation p.P79A 0.42 deleterious(0.01) benign(0.123) TCGA-66-2791-01 2 89521230 89521230 C T IGKV2-28 Silent p.V103V 0.34 TCGA-66-2791-01 2 90260185 90260185 C G IGKV1D-8 Silent p.T96T 0.16 TCGA-66-2791-01 2 99634803 99634803 G A TSGA10 Silent p.A644A 0.20 TCGA-66-2791-01 3 100362185 100362185 G A GPR128 Silent p.Q258Q 0.19 TCGA-66-2791-01 3 100362212 100362212 G T GPR128 Silent p.A267A 0.21 TCGA-66-2791-01 3 112066467 112066467 G T CD200 Missense_Mutation p.A187S 0.25 deleterious(0) probably_damaging(0.999) TCGA-66-2791-01 3 112724646 112724646 T C C3orf17 Missense_Mutation p.T481A 0.33 tolerated(0.68) benign(0.009) TCGA-66-2791-01 3 113955426 113955426 A G ZNF80 Missense_Mutation p.C166R 0.18 deleterious(0.02) benign(0.185) TCGA-66-2791-01 3 119132852 119132853 - A ARHGAP31 Frame_Shift_Ins p.F693Ifs*28 0.21 TCGA-66-2791-01 3 133337159 133337159 G C TOPBP1 Missense_Mutation p.P1164A 0.26 tolerated(0.17) possibly_damaging(0.757) TCGA-66-2791-01 3 138762900 138762900 G A PRR23C Missense_Mutation p.P188L 0.20 deleterious(0.02) benign(0.028) TCGA-66-2791-01 3 151451952 151451952 T C AADACL2 Silent p.C43C 0.21 TCGA-66-2791-01 3 15297495 15297495 C T SH3BP5 3'UTR 0.38 TCGA-66-2791-01 3 160122461 160122461 T C SMC4 Intron 0.14 TCGA-66-2791-01 3 179529630 179529630 C T PEX5L Silent p.A371A 0.45 TCGA-66-2791-01 3 183824515 183824515 T C HTR3E 3'Flank 0.52 TCGA-66-2791-01 3 19956850 19956850 T C EFHB Silent p.K411K 0.21 TCGA-66-2791-01 3 30713559 30713559 C G TGFBR2 Nonsense_Mutation p.S320* 0.37 TCGA-66-2791-01 3 38406756 38406756 C T XYLB Missense_Mutation p.R120W 0.23 tolerated(0.14) benign(0.246) TCGA-66-2791-01 3 49928037 49928037 G A MST1R Missense_Mutation p.R1231C 0.41 deleterious(0) probably_damaging(1) TCGA-66-2791-01 3 50114516 50114516 C T RBM6 Nonsense_Mutation p.R1108* 0.27 TCGA-66-2791-01 3 53212538 53212538 G C PRKCD Missense_Mutation p.E34Q 0.52 tolerated(0.06) probably_damaging(0.933) TCGA-66-2791-01 3 73433611 73433611 G A PDZRN3 Silent p.I702I 0.29 TCGA-66-2791-01 3 9877285 9877285 G A TTLL3 3'Flank 0.40 TCGA-66-2791-01 4 113568634 113568634 G T LARP7 Missense_Mutation p.R316L 0.23 tolerated(0.29) benign(0.032) TCGA-66-2791-01 4 159620142 159620142 G A ETFDH Missense_Mutation p.G326S 0.27 deleterious(0.04) possibly_damaging(0.908) TCGA-66-2791-01 4 17528651 17528651 G C CLRN2 Missense_Mutation p.E215D 0.31 tolerated(0.44) benign(0.125) TCGA-66-2791-01 4 175897673 175897673 C A ADAM29 Missense_Mutation p.H333N 0.29 deleterious(0.05) possibly_damaging(0.636) TCGA-66-2791-01 4 175898265 175898265 G C ADAM29 Missense_Mutation p.R530P 0.49 deleterious(0) probably_damaging(0.999) TCGA-66-2791-01 4 17616413 17616413 G C MED28 Missense_Mutation p.D46H 0.30 deleterious(0) probably_damaging(0.912) TCGA-66-2791-01 4 177605173 177605173 C - VEGFC Frame_Shift_Del p.N390Tfs*29 0.23 TCGA-66-2791-01 4 187540391 187540391 G C FAT1 Nonsense_Mutation p.S2450* 0.23 TCGA-66-2791-01 4 187540705 187540705 G A FAT1 Silent p.L2345L 0.27 TCGA-66-2791-01 4 26921165 26921165 A G STIM2 Missense_Mutation p.E64G 0.29 tolerated(0.08) possibly_damaging(0.664) TCGA-66-2791-01 4 42618096 42618096 C T ATP8A1 Splice_Site p.X122_splice 0.17 TCGA-66-2791-01 4 48887573 48887573 G T OCIAD2 Silent p.L131L 0.41 TCGA-66-2791-01 4 55981484 55981484 G T KDR Silent p.L151L 0.34 TCGA-66-2791-01 4 55981485 55981485 A C KDR Missense_Mutation p.L151R 0.34 tolerated(0.43) benign(0.007) TCGA-66-2791-01 4 73154571 73154571 G A ADAMTS3 Silent p.C982C 0.44 TCGA-66-2791-01 4 8383231 8383231 C G ACOX3 Missense_Mutation p.R547S 0.29 deleterious(0) possibly_damaging(0.905) TCGA-66-2791-01 5 131008511 131008511 A G FNIP1 Silent p.F542F 0.40 TCGA-66-2791-01 5 137420286 137420286 A T WNT8A Missense_Mutation p.N68Y 0.32 deleterious(0.01) benign(0.322) TCGA-66-2791-01 5 140175262 140175262 A G PCDHA2 Missense_Mutation p.N238S 0.17 deleterious_low_confidence(0.02) benign(0.309) TCGA-66-2791-01 5 140502911 140502911 A G PCDHB4 Missense_Mutation p.N444S 0.25 deleterious(0) probably_damaging(0.937) TCGA-66-2791-01 5 140558610 140558610 G A PCDHB8 Missense_Mutation p.C332Y 0.14 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-66-2791-01 5 140741324 140741324 C T PCDHGB2 Missense_Mutation p.A541V 0.39 tolerated(0.09) benign(0.382) TCGA-66-2791-01 5 14297283 14297283 G C TRIO Missense_Mutation p.E427Q 0.29 probably_damaging(0.963) TCGA-66-2791-01 5 143587013 143587013 C A KCTD16 Missense_Mutation p.H246N 0.38 deleterious(0.01) benign(0.03) TCGA-66-2791-01 5 167674284 167674284 G T TENM2 Missense_Mutation p.V2114F 0.24 tolerated(0.07) possibly_damaging(0.888) TCGA-66-2791-01 5 170610401 170610401 A G RANBP17 Missense_Mutation p.T669A 0.18 tolerated(0.12) probably_damaging(0.97) TCGA-66-2791-01 5 180486679 180486679 C T BTNL9 Silent p.H475H 0.29 TCGA-66-2791-01 5 24488226 24488226 C A CDH10 Missense_Mutation p.R638L 0.34 deleterious(0) benign(0.395) TCGA-66-2791-01 5 26881173 26881173 G A CDH9 3'UTR 0.17 TCGA-66-2791-01 5 31429647 31429647 C T DROSHA Missense_Mutation p.V1051I 0.29 tolerated(0.53) benign(0.086) TCGA-66-2791-01 5 36257555 36257555 C T RANBP3L Splice_Site p.X283_splice 0.21 TCGA-66-2791-01 5 41181632 41181632 T A C6 Silent p.T252T 0.28 TCGA-66-2791-01 5 41181633 41181633 G C C6 Missense_Mutation p.T252R 0.29 deleterious(0.01) possibly_damaging(0.653) TCGA-66-2791-01 5 45262388 45262388 T C HCN1 Missense_Mutation p.S770G 0.22 tolerated_low_confidence(0.1) benign(0.001) TCGA-66-2791-01 6 100403844 100403844 T C MCHR2 Missense_Mutation p.I60M 0.13 deleterious(0.02) possibly_damaging(0.595) TCGA-66-2791-01 6 101163282 101163282 T A ASCC3 Intron 0.22 TCGA-66-2791-01 6 107103556 107103556 A G QRSL1 Missense_Mutation p.N370S 0.20 tolerated(0.08) benign(0.323) TCGA-66-2791-01 6 107475972 107475972 T A PDSS2 Nonsense_Mutation p.R351* 0.16 TCGA-66-2791-01 6 110953347 110953347 T A CDK19 Nonsense_Mutation p.R178* 0.29 TCGA-66-2791-01 6 112496574 112496574 C A LAMA4 Missense_Mutation p.R433L 0.13 deleterious(0.04) benign(0.134) TCGA-66-2791-01 6 119327317 119327317 C T FAM184A Intron 0.15 TCGA-66-2791-01 6 127517050 127517050 A C RSPO3 Missense_Mutation p.E239D 0.12 tolerated(0.45) benign(0.004) TCGA-66-2791-01 6 129785527 129785527 C G LAMA2 Missense_Mutation p.S2362C 0.18 deleterious(0) probably_damaging(0.997) TCGA-66-2791-01 6 144769802 144769802 C T UTRN Missense_Mutation p.R657C 0.40 deleterious(0.04) possibly_damaging(0.582) TCGA-66-2791-01 6 167549917 167549917 G T CCR6 Missense_Mutation p.V67L 0.31 deleterious(0) probably_damaging(0.986) TCGA-66-2791-01 6 24523060 24523060 C T ALDH5A1 Silent p.F373F 0.08 TCGA-66-2791-01 6 27368656 27368656 A G ZNF391 Silent p.E169E 0.17 TCGA-66-2791-01 6 28472214 28472214 A G GPX6 Missense_Mutation p.M174T 0.14 deleterious(0) benign(0.004) TCGA-66-2791-01 6 29323727 29323727 C T OR5V1 Missense_Mutation p.M82I 0.13 deleterious(0) benign(0.08) TCGA-66-2791-01 6 30309968 30309968 C T TRIM39 Missense_Mutation p.P497S 0.29 tolerated(0.11) probably_damaging(1) TCGA-66-2791-01 6 30619146 30619146 G A C6orf136 Missense_Mutation p.E404K 0.25 deleterious(0.01) possibly_damaging(0.827) TCGA-66-2791-01 6 31936487 31936487 C T SKIV2L Nonsense_Mutation p.Q1032* 0.09 TCGA-66-2791-01 6 32037522 32037522 G A TNXB Missense_Mutation p.P1799S 0.35 probably_damaging(0.996) TCGA-66-2791-01 6 42797822 42797822 C A GLTSCR1L Missense_Mutation p.S584Y 0.25 deleterious(0.01) possibly_damaging(0.843) TCGA-66-2791-01 6 47682138 47682138 C A GPR115 Missense_Mutation p.S386Y 0.22 deleterious(0) probably_damaging(0.989) TCGA-66-2791-01 6 54095515 54095515 G T MLIP Missense_Mutation p.V373L 0.22 tolerated(0.23) benign(0.009) TCGA-66-2791-01 6 55739374 55739374 G T BMP5 Nonsense_Mutation p.S97* 0.28 TCGA-66-2791-01 6 57012894 57012894 C A ZNF451 Missense_Mutation p.L671I 0.15 tolerated(0.06) probably_damaging(0.997) TCGA-66-2791-01 6 57012976 57012976 C G ZNF451 Nonsense_Mutation p.S698* 0.14 TCGA-66-2791-01 6 70847580 70847580 G A COL19A1 Missense_Mutation p.E463K 0.28 tolerated(0.12) benign(0.113) TCGA-66-2791-01 6 79700673 79700673 C - PHIP Frame_Shift_Del p.G744Efs*5 0.11 TCGA-66-2791-01 6 83839921 83839921 G C DOPEY1 Missense_Mutation p.Q807H 0.26 deleterious(0) probably_damaging(0.998) TCGA-66-2791-01 6 84417613 84417613 C A SNAP91 Missense_Mutation p.A12S 0.21 deleterious(0) unknown(0) TCGA-66-2791-01 6 85472385 85472385 G A TBX18 Missense_Mutation p.S125F 0.21 tolerated(0.09) benign(0.004) TCGA-66-2791-01 6 90097269 90097269 C A RRAGD Silent p.P63P 0.24 TCGA-66-2791-01 6 90348463 90348463 G C LYRM2 5'UTR 0.06 TCGA-66-2791-01 6 96651208 96651208 T G FUT9 Missense_Mutation p.D59E 0.27 tolerated(0.4) benign(0.023) TCGA-66-2791-01 7 104783528 104783528 G A SRPK2 Intron 0.23 TCGA-66-2791-01 7 121942000 121942000 G A FEZF1 3'UTR 0.14 TCGA-66-2791-01 7 129950677 129950677 G C CPA4 Missense_Mutation p.A282P 0.18 tolerated(0.4) benign(0.283) TCGA-66-2791-01 7 136700338 136700338 G T CHRM2 Missense_Mutation p.K242N 0.22 tolerated(0.21) possibly_damaging(0.826) TCGA-66-2791-01 7 138978162 138978162 C T UBN2 Missense_Mutation p.T1285I 0.21 tolerated_low_confidence(0.11) benign(0.147) TCGA-66-2791-01 7 141408804 141408804 G A WEE2 Silent p.R82R 0.21 TCGA-66-2791-01 7 141833838 141833838 C T RP11-1220K2.2 Silent p.F211F 0.20 TCGA-66-2791-01 7 150921066 150921066 C G ABCF2 Missense_Mutation p.E168Q 0.13 deleterious(0.04) benign(0.192) TCGA-66-2791-01 7 150921083 150921083 A T ABCF2 Missense_Mutation p.V162E 0.12 deleterious(0) probably_damaging(0.992) TCGA-66-2791-01 7 154876035 154876035 C G HTR5A Silent p.T304T 0.21 TCGA-66-2791-01 7 18631171 18631171 C A HDAC9 Missense_Mutation p.L150I 0.32 deleterious(0) benign(0.35) TCGA-66-2791-01 7 36661376 36661376 C - AOAH Frame_Shift_Del p.G198Afs*85 0.15 TCGA-66-2791-01 7 38471795 38471795 T C AMPH Silent p.L384L 0.16 TCGA-66-2791-01 7 43916608 43916608 T C URGCP Silent p.V818V 0.18 TCGA-66-2791-01 7 62752809 62752809 C G ZNF733P RNA 0.22 TCGA-66-2791-01 7 63720618 63720618 A G ZNF679 Missense_Mutation p.D20G 0.10 deleterious(0) probably_damaging(0.999) TCGA-66-2791-01 7 64004166 64004166 T C ZNF680 Missense_Mutation p.K58E 0.29 deleterious(0.02) probably_damaging(0.985) TCGA-66-2791-01 7 66410077 66410077 G A TMEM248 Missense_Mutation p.G92R 0.21 tolerated(0.84) benign(0.018) TCGA-66-2791-01 7 66773997 66773997 G T STAG3L4 RNA 0.19 TCGA-66-2791-01 7 73474756 73474756 G A ELN Missense_Mutation p.G558S 0.16 unknown(0) TCGA-66-2791-01 7 87760755 87760755 G T ADAM22 Intron 0.16 TCGA-66-2791-01 7 92027804 92027804 G A ANKIB1 Silent p.L937L 0.26 TCGA-66-2791-01 7 95614288 95614288 G T DYNC1I1 Missense_Mutation p.G265W 0.22 deleterious(0) probably_damaging(1) TCGA-66-2791-01 7 95822420 95822420 C A SLC25A13 Missense_Mutation p.D182Y 0.20 deleterious(0) probably_damaging(0.99) TCGA-66-2791-01 7 99022669 99022669 C G ATP5J2-PTCD1 Missense_Mutation p.V545L 0.15 tolerated(0.75) benign(0.008) TCGA-66-2791-01 7 99799330 99799330 C G GATS 3'UTR 0.24 TCGA-66-2791-01 8 139603731 139603731 G - COL22A1 Frame_Shift_Del p.G1545Vfs*79 0.59 TCGA-66-2791-01 8 28989937 28989937 C T KIF13B Missense_Mutation p.E944K 0.36 deleterious(0) possibly_damaging(0.49) TCGA-66-2791-01 8 30702390 30702390 C G TEX15 Missense_Mutation p.E1382Q 0.31 deleterious(0.02) possibly_damaging(0.494) TCGA-66-2791-01 8 55372456 55372456 T C SOX17 Silent p.H382H 0.19 TCGA-66-2791-01 8 55541069 55541069 G C RP1 Missense_Mutation p.D1543H 0.24 deleterious(0) probably_damaging(0.982) TCGA-66-2791-01 8 64099372 64099372 C T YTHDF3 Missense_Mutation p.P267L 0.17 deleterious(0) probably_damaging(1) TCGA-66-2791-01 8 67086924 67086924 G A TRIM55 3'UTR 0.21 TCGA-66-2791-01 8 77776502 77776502 C T ZFHX4 Missense_Mutation p.L3518F 0.30 probably_damaging(0.994) TCGA-66-2791-01 8 8233763 8233763 C T SGK223 Missense_Mutation p.R719Q 0.24 probably_damaging(0.978) TCGA-66-2791-01 8 88365862 88365862 A T CNBD1 Splice_Site p.X385_splice 0.24 TCGA-66-2791-01 9 105768032 105768032 A T CYLC2 3'UTR 0.12 TCGA-66-2791-01 9 109689709 109689709 C A ZNF462 Silent p.P1172P 0.20 TCGA-66-2791-01 9 119109373 119109373 C G PAPPA Silent p.V1283V 0.31 TCGA-66-2791-01 9 122075433 122075433 G T BRINP1 Silent p.T67T 0.21 TCGA-66-2791-01 9 125796810 125796810 G A GPR21 5'UTR 0.33 TCGA-66-2791-01 9 131345357 131345357 A G SPTAN1 Missense_Mutation p.D603G 0.26 deleterious(0) probably_damaging(1) TCGA-66-2791-01 9 136319552 136319552 C A ADAMTS13 Silent p.S1020S 0.20 TCGA-66-2791-01 9 2116022 2116022 C T SMARCA2 Silent p.A1219A 0.13 TCGA-66-2791-01 9 5753220 5753220 G T KIAA1432 Missense_Mutation p.E491D 0.47 tolerated(0.42) benign(0.035) TCGA-66-2791-01 9 84531394 84531394 T C SPATA31D5P RNA 0.29 TCGA-66-2791-01 9 84562786 84562786 T A RP11-383M4.6 Intron 0.34 TCGA-66-2791-01 9 91661806 91661806 G A SHC3 Missense_Mutation p.L356F 0.23 tolerated(0.05) benign(0.002) TCGA-66-2791-01 9 99160542 99160542 C T ZNF367 Missense_Mutation p.E159K 0.21 tolerated(0.06) probably_damaging(0.938) TCGA-66-2791-01 X 104464811 104464811 G C TEX13A Missense_Mutation p.R91G 0.27 deleterious(0.01) benign(0.044) TCGA-66-2791-01 X 117895230 117895230 C G IL13RA1 Missense_Mutation p.T269S 0.36 tolerated(1) benign(0.002) TCGA-66-2791-01 X 118222757 118222757 T C KIAA1210 Silent p.Q812Q 0.55 TCGA-66-2791-01 X 129629114 129629114 C A RP1-274L7.1 RNA 0.47 TCGA-66-2791-01 X 130215797 130215797 A G ARHGAP36 Missense_Mutation p.H53R 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-66-2791-01 X 135053241 135053241 T - MMGT1 Frame_Shift_Del p.E37Kfs*7 0.37 TCGA-66-2791-01 X 140985615 140985615 G T MAGEC3 Missense_Mutation p.E643D 0.39 deleterious_low_confidence(0) possibly_damaging(0.636) TCGA-66-2791-01 X 140996228 140996228 A G MAGEC1 Missense_Mutation p.Y1013C 0.46 tolerated(1) unknown(0) TCGA-66-2791-01 X 2640679 2640679 G C CD99 Missense_Mutation p.D92H 0.23 deleterious(0) probably_damaging(0.961) TCGA-66-2791-01 X 2878444 2878444 T A ARSE 5'UTR 0.39 TCGA-66-2791-01 X 30872850 30872850 A G TAB3 Missense_Mutation p.V311A 0.28 tolerated(0.95) benign(0.075) TCGA-66-2791-01 X 44936072 44936072 G A KDM6A Splice_Site p.X944_splice 0.47 TCGA-66-2791-01 X 47044725 47044725 A G RBM10 Missense_Mutation p.T709A 0.62 tolerated(0.55) benign(0.057) TCGA-66-2791-01 X 53231062 53231062 C A KDM5C Missense_Mutation p.A614S 0.45 deleterious(0.02) probably_damaging(0.996) TCGA-66-2791-01 X 77528293 77528293 C A CYSLTR1 Silent p.V317V 0.23 TCGA-66-2791-01 X 7894053 7894053 G A PNPLA4 Silent p.V36V 0.40 TCGA-66-2792-01 10 108536394 108536394 T C SORCS1 Silent p.E261E 0.58 TCGA-66-2792-01 10 120095118 120095118 C T FAM204A Silent p.Q90Q 0.71 TCGA-66-2792-01 10 127429673 127429673 T C EDRF1 Silent p.N758N 0.62 TCGA-66-2792-01 10 17949583 17949583 C A MRC1L1 Missense_Mutation p.S1316Y 0.16 possibly_damaging(0.601) TCGA-66-2792-01 10 4884670 4884670 C A AKR1E2 Missense_Mutation p.P271T 0.32 deleterious(0.01) possibly_damaging(0.696) TCGA-66-2792-01 10 50691393 50691393 T A ERCC6 Missense_Mutation p.Q664L 0.68 deleterious(0.02) possibly_damaging(0.766) TCGA-66-2792-01 11 116729359 116729359 T C SIK3 Missense_Mutation p.H835R 0.48 deleterious_low_confidence(0) benign(0.046) TCGA-66-2792-01 11 130331416 130331416 G - ADAMTS15 Frame_Shift_Del p.G331Afs*44 0.57 TCGA-66-2792-01 11 17428178 17428178 G T ABCC8 Missense_Mutation p.A1107D 0.67 deleterious(0) possibly_damaging(0.698) TCGA-66-2792-01 11 20005751 20005751 C T NAV2 Missense_Mutation p.T932I 0.64 tolerated(0.18) probably_damaging(0.997) TCGA-66-2792-01 11 26725099 26725099 T A SLC5A12 Missense_Mutation p.K267I 0.64 deleterious(0) probably_damaging(0.984) TCGA-66-2792-01 11 56258265 56258265 C A OR5M8 Missense_Mutation p.K194N 0.18 tolerated(0.12) possibly_damaging(0.599) TCGA-66-2792-01 11 56468738 56468738 G A OR9G1 Missense_Mutation p.R292K 0.11 tolerated(0.08) benign(0.242) TCGA-66-2792-01 11 59622223 59622223 T A TCN1 Missense_Mutation p.R341S 0.19 tolerated(0.47) benign(0.021) TCGA-66-2792-01 11 62397403 62397403 C T GANAB Nonsense_Mutation p.W562* 0.22 TCGA-66-2792-01 11 6291936 6291936 C T CCKBR Silent p.Y238Y 0.21 TCGA-66-2792-01 11 6806970 6806970 G A OR2AG1 Silent p.R234R 0.57 TCGA-66-2792-01 11 686886 686886 G A DEAF1 Missense_Mutation p.A259V 0.43 deleterious(0) probably_damaging(0.952) TCGA-66-2792-01 11 82708291 82708291 G A RAB30 Missense_Mutation p.T23M 0.13 deleterious(0) probably_damaging(1) TCGA-66-2792-01 11 85447586 85447586 A T SYTL2 Missense_Mutation p.S181T 0.19 tolerated(0.16) possibly_damaging(0.574) TCGA-66-2792-01 11 9005648 9005648 G C NRIP3 Missense_Mutation p.L196V 0.56 deleterious(0.01) benign(0.43) TCGA-66-2792-01 12 101005798 101005798 G A GAS2L3 Silent p.V108V 0.58 TCGA-66-2792-01 12 118575878 118575878 G T PEBP1 Missense_Mutation p.G57V 0.13 tolerated(0.06) benign(0.025) TCGA-66-2792-01 12 118693369 118693369 G C TAOK3 Missense_Mutation p.R2G 0.27 deleterious(0) probably_damaging(0.988) TCGA-66-2792-01 12 13208823 13208823 C G KIAA1467 Missense_Mutation p.P126A 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-66-2792-01 12 26220541 26220541 C T RASSF8 Missense_Mutation p.R345W 0.40 deleterious(0) probably_damaging(0.99) TCGA-66-2792-01 12 53345369 53345369 C T KRT18 Silent p.A254A 0.30 TCGA-66-2792-01 12 56717636 56717636 C T PAN2 Silent p.Q713Q 0.14 TCGA-66-2792-01 12 6440025 6440025 C T TNFRSF1A Missense_Mutation p.D207N 0.16 tolerated(0.11) benign(0.132) TCGA-66-2792-01 13 30104821 30104821 C A SLC7A1 Silent p.S186S 0.72 TCGA-66-2792-01 13 76055559 76055559 C T TBC1D4 Silent p.A115A 0.82 TCGA-66-2792-01 13 79946001 79946001 G C RBM26 Nonsense_Mutation p.S131* 0.26 TCGA-66-2792-01 14 22539381 22539381 G A TRAV22 Missense_Mutation p.A81T 0.24 tolerated(0.13) benign(0.147) TCGA-66-2792-01 14 26917694 26917694 A T NOVA1 Nonsense_Mutation p.L332* 0.53 TCGA-66-2792-01 14 44974483 44974483 C A FSCB Nonsense_Mutation p.E570* 0.30 TCGA-66-2792-01 14 44975345 44975345 C G FSCB Missense_Mutation p.E282D 0.38 tolerated(0.06) benign(0.443) TCGA-66-2792-01 14 50585051 50585051 T G SOS2 3'UTR 0.30 TCGA-66-2792-01 14 57700535 57700535 C T EXOC5 Missense_Mutation p.V261I 0.25 tolerated(1) benign(0.071) TCGA-66-2792-01 14 58813807 58813807 T G ARID4A Missense_Mutation p.S382A 0.37 tolerated(0.09) probably_damaging(0.998) TCGA-66-2792-01 14 75904629 75904629 G A JDP2 Missense_Mutation p.M13I 0.53 tolerated(0.06) benign(0.052) TCGA-66-2792-01 14 77810117 77810117 T A TMED8 Missense_Mutation p.Q126L 0.34 deleterious(0) probably_damaging(0.997) TCGA-66-2792-01 15 20170141 20170141 G T IGHV1OR15-9 Missense_Mutation p.S44Y 0.41 deleterious(0) probably_damaging(0.914) TCGA-66-2792-01 15 25310256 25310256 G A SNORD116-6 RNA 0.19 TCGA-66-2792-01 15 31354881 31354881 C G TRPM1 Missense_Mutation p.E347D 0.26 tolerated(1) benign(0.001) TCGA-66-2792-01 15 63598018 63598018 T C APH1B 3'UTR 0.12 TCGA-66-2792-01 15 64495336 64495336 C G CSNK1G1 Missense_Mutation p.R351P 0.30 deleterious(0.04) possibly_damaging(0.858) TCGA-66-2792-01 15 72542428 72542428 G A PARP6 Missense_Mutation p.S475F 0.16 deleterious(0) probably_damaging(0.997) TCGA-66-2792-01 15 75503517 75503517 C T C15orf39 3'UTR 0.25 TCGA-66-2792-01 15 79749056 79749056 C G KIAA1024 Silent p.A189A 0.26 TCGA-66-2792-01 16 19041589 19041589 T C TMC7 Missense_Mutation p.I252T 0.60 tolerated(0.36) benign(0.097) TCGA-66-2792-01 16 21181808 21181808 G A TMEM159 Silent p.P49P 0.72 TCGA-66-2792-01 17 10359023 10359023 C A MYH4 Silent p.L694L 0.26 TCGA-66-2792-01 17 10400644 10400644 G T MYH1 Missense_Mutation p.D1497E 0.22 tolerated(0.53) benign(0.045) TCGA-66-2792-01 17 11532901 11532901 G C DNAH9 Silent p.T506T 0.20 TCGA-66-2792-01 17 25965358 25965358 G T LGALS9 Missense_Mutation p.V37F 0.28 deleterious(0) probably_damaging(0.956) TCGA-66-2792-01 17 35993348 35993348 G A DDX52 Silent p.S129S 0.31 TCGA-66-2792-01 17 5039221 5039221 C T USP6 Missense_Mutation p.P221L 0.42 deleterious_low_confidence(0.03) possibly_damaging(0.908) TCGA-66-2792-01 17 56670914 56670914 A G TEX14 Splice_Site p.X865_splice 0.30 TCGA-66-2792-01 17 68128628 68128628 T C KCNJ16 Missense_Mutation p.Y134H 0.10 deleterious(0) probably_damaging(0.999) TCGA-66-2792-01 17 74899417 74899417 C T MGAT5B Missense_Mutation p.P171S 0.24 deleterious(0.01) probably_damaging(0.953) TCGA-66-2792-01 17 7557573 7557573 C T ATP1B2 Missense_Mutation p.R184W 0.23 deleterious(0) probably_damaging(0.91) TCGA-66-2792-01 17 7577022 7577022 G A TP53 Nonsense_Mutation p.R306* 0.39 TCGA-66-2792-01 17 7577138 7577138 C G TP53 Missense_Mutation p.R267P 0.20 deleterious(0) probably_damaging(0.997) TCGA-66-2792-01 17 7578177 7578177 C T TP53 Silent p.E224E 0.32 TCGA-66-2792-01 17 79514423 79514423 G C C17orf70 Missense_Mutation p.A562G 0.49 deleterious(0.04) probably_damaging(0.946) TCGA-66-2792-01 17 80575270 80575270 G A WDR45B Silent p.I236I 0.29 TCGA-66-2792-01 17 9792887 9792887 T G GLP2R Silent p.G509G 0.37 TCGA-66-2792-01 18 19110207 19110207 T A ESCO1 3'UTR 0.45 TCGA-66-2792-01 18 21427528 21427528 A G LAMA3 Silent p.S1344S 0.83 TCGA-66-2792-01 19 12856427 12856427 G T ASNA1 Missense_Mutation p.V155L 0.72 tolerated(0.05) benign(0.327) TCGA-66-2792-01 19 1954067 1954067 G T CSNK1G2 Intron 0.84 TCGA-66-2792-01 19 2137779 2137779 A T AP3D1 Missense_Mutation p.W74R 0.80 deleterious(0) probably_damaging(0.999) TCGA-66-2792-01 19 36494565 36494565 C G SYNE4 Missense_Mutation p.K327N 0.15 tolerated(0.07) possibly_damaging(0.788) TCGA-66-2792-01 19 37440987 37440987 G C ZNF568 Missense_Mutation p.C311S 0.24 deleterious(0) probably_damaging(0.998) TCGA-66-2792-01 19 39108208 39108208 C T MAP4K1 Missense_Mutation p.D53N 0.29 deleterious(0.05) possibly_damaging(0.782) TCGA-66-2792-01 19 42265295 42265295 G C CEACAM6 Missense_Mutation p.S188T 0.30 tolerated(0.2) probably_damaging(0.996) TCGA-66-2792-01 19 44515453 44515453 A G ZNF230 Missense_Mutation p.K421R 0.66 tolerated(0.08) benign(0.208) TCGA-66-2792-01 19 7685168 7685168 C T XAB2 Silent p.T753T 0.17 TCGA-66-2792-01 1 11561290 11561290 G A PTCHD2 Missense_Mutation p.G81S 0.28 tolerated_low_confidence(0.11) benign(0.03) TCGA-66-2792-01 1 152323767 152323767 G A FLG2 Silent p.S2165S 0.17 TCGA-66-2792-01 1 156450735 156450735 C T MEF2D Missense_Mutation p.C96Y 0.55 deleterious(0) probably_damaging(0.999) TCGA-66-2792-01 1 158735972 158735973 - G OR6N1 Frame_Shift_Ins p.F168Ifs*13 0.17 TCGA-66-2792-01 1 158908982 158908982 G A PYHIN1 Missense_Mutation p.R175H 0.16 tolerated(1) benign(0) TCGA-66-2792-01 1 161518242 161518242 G T FCGR3A Silent p.L132L 0.10 TCGA-66-2792-01 1 161599599 161599599 G T FCGR3B Silent p.L132L 0.09 TCGA-66-2792-01 1 163172635 163172635 T C RGS5 5'UTR 0.32 TCGA-66-2792-01 1 16355720 16355720 C A CLCNKA Missense_Mutation p.Q385K 0.58 tolerated(0.61) benign(0.013) TCGA-66-2792-01 1 178425887 178425887 G A RASAL2 Missense_Mutation p.R748H 0.20 deleterious(0.01) possibly_damaging(0.876) TCGA-66-2792-01 1 19440346 19440346 C T UBR4 Intron 0.38 TCGA-66-2792-01 1 203702376 203702376 C T ATP2B4 Intron 0.16 TCGA-66-2792-01 1 221913078 221913078 C T DUSP10 Silent p.P3P 0.57 TCGA-66-2792-01 1 231047278 231047278 G A TTC13 Silent p.C749C 0.33 TCGA-66-2792-01 1 237664052 237664052 T A RYR2 Missense_Mutation p.L749I 0.46 possibly_damaging(0.87) TCGA-66-2792-01 1 240370373 240370373 T G FMN2 Missense_Mutation p.V754G 0.31 unknown(0) TCGA-66-2792-01 1 248004842 248004842 G T OR11L1 Silent p.A119A 0.25 TCGA-66-2792-01 1 33790445 33790445 G T PHC2 3'UTR 0.52 TCGA-66-2792-01 1 44084851 44084851 G T PTPRF Missense_Mutation p.G1542W 0.80 deleterious(0) probably_damaging(0.998) TCGA-66-2792-01 1 53679291 53679291 C T CPT2 3'UTR 0.81 TCGA-66-2792-01 1 62916148 62916148 G T USP1 Missense_Mutation p.M618I 0.35 tolerated(0.18) benign(0.002) TCGA-66-2792-01 1 70819844 70819844 G A ANKRD13C Missense_Mutation p.S83F 0.32 deleterious_low_confidence(0) benign(0.097) TCGA-66-2792-01 20 2384287 2384287 C A TGM6 Missense_Mutation p.A385D 0.41 tolerated(1) benign(0.009) TCGA-66-2792-01 20 25848663 25848663 C A FAM182B 5'Flank 0.14 TCGA-66-2792-01 20 61444873 61444873 G T OGFR Nonsense_Mutation p.E636* 0.46 TCGA-66-2792-01 21 31971186 31971186 C A KRTAP6-2 Missense_Mutation p.G3V 0.36 unknown(0) TCGA-66-2792-01 22 19467458 19467458 C T CDC45 5'UTR 0.59 TCGA-66-2792-01 22 24659572 24659572 C G POM121L9P RNA 0.32 TCGA-66-2792-01 22 30951744 30951744 G A GAL3ST1 Silent p.N156N 0.36 TCGA-66-2792-01 22 31674411 31674411 G T LIMK2 3'Flank 0.41 TCGA-66-2792-01 22 37964144 37964144 C T CDC42EP1 Missense_Mutation p.R165C 0.39 deleterious(0) probably_damaging(0.991) TCGA-66-2792-01 22 41349630 41349630 G A RBX1 Missense_Mutation p.M50I 0.19 deleterious(0) benign(0.322) TCGA-66-2792-01 22 42608247 42608247 C T TCF20 Missense_Mutation p.R1022Q 0.27 probably_damaging(0.997) TCGA-66-2792-01 2 109539886 109539886 G A EDAR Missense_Mutation p.P127L 0.47 deleterious(0.01) probably_damaging(0.998) TCGA-66-2792-01 2 114688952 114688952 A T ACTR3 Silent p.P137P 0.44 TCGA-66-2792-01 2 11733151 11733151 T C GREB1 Missense_Mutation p.M532T 0.42 tolerated(1) probably_damaging(0.974) TCGA-66-2792-01 2 119750717 119750717 G T MARCO Missense_Mutation p.V424F 0.07 deleterious(0) unknown(0) TCGA-66-2792-01 2 128408389 128408389 C A GPR17 Missense_Mutation p.T55K 0.28 tolerated(0.09) benign(0.16) TCGA-66-2792-01 2 141122335 141122335 C A LRP1B Missense_Mutation p.A3676S 0.44 benign(0.015) TCGA-66-2792-01 2 149838057 149838057 C T KIF5C Silent p.D517D 0.37 TCGA-66-2792-01 2 16736368 16736368 C G FAM49A Missense_Mutation p.D293H 0.11 tolerated(0.06) possibly_damaging(0.657) TCGA-66-2792-01 2 190571740 190571740 G T ANKAR Missense_Mutation p.A663S 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-66-2792-01 2 31165143 31165143 G A GALNT14 Silent p.F290F 0.28 TCGA-66-2792-01 2 46711511 46711511 C T TMEM247 Silent p.Y202Y 0.43 TCGA-66-2792-01 2 68882479 68882479 A T PROKR1 Missense_Mutation p.K318M 0.38 deleterious(0.01) probably_damaging(0.957) TCGA-66-2792-01 2 79253251 79253251 C A REG3G Missense_Mutation p.S11Y 0.33 tolerated(0.11) possibly_damaging(0.827) TCGA-66-2792-01 2 79384331 79384331 G T REG3A 3'UTR 0.39 TCGA-66-2792-01 2 79386590 79386590 G C REG3A 5'UTR 0.38 TCGA-66-2792-01 2 88828671 88828671 C A TEX37 Silent p.P74P 0.39 TCGA-66-2792-01 2 90109062 90109062 G T IGKV6D-41 Missense_Mutation p.Q109H 0.36 tolerated(0.06) benign(0.103) TCGA-66-2792-01 3 122512524 122512524 C G HSPBAP1 Missense_Mutation p.A2P 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.708) TCGA-66-2792-01 3 132400856 132400856 G C NPHP3 Silent p.L1297L 0.66 TCGA-66-2792-01 3 50012788 50012788 G A RBM6 Missense_Mutation p.M482I 0.49 tolerated(0.45) benign(0.001) TCGA-66-2792-01 3 89456489 89456489 C A EPHA3 Silent p.L555L 0.45 TCGA-66-2792-01 4 103498032 103498032 G T NFKB1 Splice_Site p.X136_splice 0.66 TCGA-66-2792-01 4 25028544 25028544 G A LGI2 Missense_Mutation p.S96L 0.64 tolerated(0.07) benign(0.343) TCGA-66-2792-01 4 3424106 3424106 G A RGS12 Missense_Mutation p.E948K 0.60 tolerated(0.17) benign(0.169) TCGA-66-2792-01 4 73012827 73012827 A C NPFFR2 Missense_Mutation p.E289D 0.26 tolerated(0.09) benign(0.107) TCGA-66-2792-01 4 76447060 76447060 C T THAP6 Nonsense_Mutation p.Q135* 0.68 TCGA-66-2792-01 4 88583873 88583873 G A DMP1 Missense_Mutation p.G315S 0.24 tolerated(1) benign(0.069) TCGA-66-2792-01 4 898493 898495 AGA - GAK In_Frame_Del p.F152del 0.64 TCGA-66-2792-01 5 109181611 109181611 G T MAN2A1 Missense_Mutation p.V916F 0.64 tolerated(1) benign(0.075) TCGA-66-2792-01 5 121188071 121188071 G C FTMT Missense_Mutation p.G138A 0.83 deleterious(0.02) probably_damaging(0.974) TCGA-66-2792-01 5 132099577 132099577 G A SEPT8 Missense_Mutation p.P119S 0.12 tolerated(0.11) benign(0.252) TCGA-66-2792-01 5 13737392 13737392 T C DNAH5 Silent p.Q3808Q 0.19 TCGA-66-2792-01 5 156482444 156482444 T G HAVCR1 Missense_Mutation p.R49S 0.54 deleterious(0) benign(0.44) TCGA-66-2792-01 5 17354410 17354410 A C CTD-2139B15.2 RNA 0.09 TCGA-66-2792-01 5 33662055 33662055 G C ADAMTS12 Missense_Mutation p.P336A 0.16 deleterious(0) probably_damaging(1) TCGA-66-2792-01 5 36049132 36049132 C A UGT3A2 Missense_Mutation p.R234S 0.74 deleterious(0.03) possibly_damaging(0.777) TCGA-66-2792-01 5 9154637 9154648 TCTTGACCACGT - SEMA5A In_Frame_Del p.H478_I482delinsL 0.19 TCGA-66-2792-01 6 155578117 155578117 C A TIAM2 Missense_Mutation p.H1656Q 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.889) TCGA-66-2792-01 6 158900915 158900915 A T TULP4 Missense_Mutation p.S387C 0.53 deleterious(0.01) benign(0.014) TCGA-66-2792-01 6 29342547 29342547 T C OR12D3 Missense_Mutation p.N173S 0.34 tolerated(0.07) benign(0.014) TCGA-66-2792-01 6 32947734 32947734 A G BRD2 Silent p.L692L 0.36 TCGA-66-2792-01 7 100486765 100486765 A T UFSP1 Missense_Mutation p.L43Q 0.30 deleterious(0) probably_damaging(1) TCGA-66-2792-01 7 127222187 127222187 G A GCC1 Silent p.L737L 0.20 TCGA-66-2792-01 7 140156495 140156495 G A MKRN1 Missense_Mutation p.R315C 0.22 deleterious(0.04) possibly_damaging(0.597) TCGA-66-2792-01 7 15651977 15651977 T G MEOX2 3'UTR 0.17 TCGA-66-2792-01 7 53104165 53104165 C T POM121L12 Silent p.F267F 0.07 TCGA-66-2792-01 7 64452985 64452985 C T ERV3-1 Missense_Mutation p.M140I 0.22 tolerated(0.42) benign(0.02) TCGA-66-2792-01 7 72683391 72683391 C T GTF2IRD2P1 RNA 0.34 TCGA-66-2792-01 7 80439994 80439994 G C SEMA3C Silent p.S157S 0.37 TCGA-66-2792-01 7 97866102 97866102 C T TECPR1 Silent p.S389S 0.25 TCGA-66-2792-01 8 103309124 103309124 C A UBR5 Missense_Mutation p.C1221F 0.37 deleterious(0) probably_damaging(0.996) TCGA-66-2792-01 8 110478882 110478882 G A PKHD1L1 Missense_Mutation p.S2830N 0.25 tolerated(0.11) benign(0.093) TCGA-66-2792-01 8 11995031 11995031 G C USP17L2 Silent p.P413P 0.36 TCGA-66-2792-01 8 124663821 124663821 A T KLHL38 Missense_Mutation p.I449N 0.18 deleterious(0) benign(0.418) TCGA-66-2792-01 8 143823221 143823221 C A SLURP1 Nonsense_Mutation p.E60* 0.20 TCGA-66-2792-01 8 144886281 144886281 C T SCRIB Missense_Mutation p.V1019I 0.61 probably_damaging(0.983) TCGA-66-2792-01 8 55539267 55539267 C T RP1 Missense_Mutation p.T942M 0.25 tolerated(0.11) benign(0.005) TCGA-66-2792-01 8 87060971 87060971 G T PSKH2 Missense_Mutation p.A293E 0.23 deleterious(0) probably_damaging(0.995) TCGA-66-2792-01 8 98943719 98943719 G A MATN2 Silent p.T227T 0.27 TCGA-66-2792-01 8 98943720 98943720 C A MATN2 Missense_Mutation p.L228M 0.27 deleterious(0) probably_damaging(1) TCGA-66-2792-01 8 99441494 99441494 C A KCNS2 Missense_Mutation p.S429R 0.10 tolerated(1) probably_damaging(0.979) TCGA-66-2792-01 9 107289409 107289409 A C OR13C4 Missense_Mutation p.F28V 0.37 deleterious(0) probably_damaging(0.997) TCGA-66-2792-01 9 123780009 123780009 T C C5 Missense_Mutation p.Y543C 0.29 deleterious(0) probably_damaging(1) TCGA-66-2792-01 9 133961063 133961065 AAG - LAMC3 In_Frame_Del p.K1397del 0.40 TCGA-66-2792-01 9 139925444 139925444 G T FUT7 Silent p.G249G 0.39 TCGA-66-2792-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.85 TCGA-66-2792-01 X 100117753 100117753 C T NOX1 Missense_Mutation p.A132T 0.43 tolerated(0.38) possibly_damaging(0.474) TCGA-66-2792-01 X 107834432 107834432 C T COL4A5 Missense_Mutation p.P437L 0.74 unknown(0) TCGA-66-2792-01 X 35974179 35974179 A C CXorf22 Missense_Mutation p.M426L 0.51 tolerated(0.52) benign(0.003) TCGA-66-2792-01 X 47862002 47862002 T A ZNF182 5'UTR 0.24 TCGA-66-2792-01 X 64749609 64749609 T C LAS1L Missense_Mutation p.I222V 0.79 tolerated(0.47) benign(0.011) TCGA-66-2793-01 10 104140082 104140082 T C GBF1 Missense_Mutation p.M1651T 0.87 deleterious(0) probably_damaging(0.954) TCGA-66-2793-01 10 105344807 105344807 C T NEURL1 Silent p.R388R 0.67 TCGA-66-2793-01 10 16981129 16981129 T C CUBN Missense_Mutation p.I1856V 0.70 tolerated(0.13) probably_damaging(0.999) TCGA-66-2793-01 10 25887945 25887945 G A GPR158 Silent p.E1130E 0.82 TCGA-66-2793-01 10 27539288 27539288 A T RP11-85G18.6 RNA 0.83 TCGA-66-2793-01 10 31749974 31749974 T A ZEB1 Missense_Mutation p.Y23N 0.80 deleterious(0) probably_damaging(0.996) TCGA-66-2793-01 10 45499441 45499441 C G ZNF22 Missense_Mutation p.P209A 0.93 tolerated(0.47) benign(0.001) TCGA-66-2793-01 10 59955890 59955890 C T IPMK Missense_Mutation p.V400I 0.48 tolerated(1) benign(0.004) TCGA-66-2793-01 10 70513633 70513633 A G CCAR1 Silent p.L381L 0.45 TCGA-66-2793-01 10 8100348 8100348 A T GATA3 Missense_Mutation p.T108S 0.67 tolerated(1) benign(0) TCGA-66-2793-01 10 88676951 88676951 G C BMPR1A Missense_Mutation p.G246R 0.36 deleterious(0) probably_damaging(0.998) TCGA-66-2793-01 10 98808756 98808756 T A SLIT1 Missense_Mutation p.N474I 0.82 deleterious(0) probably_damaging(1) TCGA-66-2793-01 10 99130284 99130284 C T RRP12 Missense_Mutation p.A873T 0.77 deleterious(0) benign(0.126) TCGA-66-2793-01 11 101832922 101832922 A T KIAA1377 Missense_Mutation p.T386S 0.16 tolerated(0.35) benign(0.038) TCGA-66-2793-01 11 104778311 104778311 C A RP11-693N9.2 RNA 0.79 TCGA-66-2793-01 11 106810216 106810216 A T GUCY1A2 Silent p.P392P 0.19 TCGA-66-2793-01 11 108155174 108155174 A G ATM Missense_Mutation p.K1323E 0.12 tolerated(0.2) benign(0.013) TCGA-66-2793-01 11 1097313 1097313 C T MUC2 Silent p.F2243F 0.32 TCGA-66-2793-01 11 111784533 111784533 A G HSPB2 Missense_Mutation p.T155A 0.64 tolerated(0.65) benign(0.004) TCGA-66-2793-01 11 117097994 117097994 G T PCSK7 Silent p.P216P 0.61 TCGA-66-2793-01 11 117303860 117303860 G T DSCAML1 Missense_Mutation p.Q1734K 0.32 tolerated(0.51) probably_damaging(0.942) TCGA-66-2793-01 11 118498322 118498322 A C PHLDB1 Silent p.P261P 0.03 TCGA-66-2793-01 11 120833331 120833331 A C GRIK4 Missense_Mutation p.N736T 0.08 deleterious(0) probably_damaging(0.995) TCGA-66-2793-01 11 122017227 122017227 C G MIRLET7A2 3'Flank 0.13 TCGA-66-2793-01 11 122653834 122653834 C A UBASH3B Silent p.P225P 0.45 TCGA-66-2793-01 11 123886455 123886455 C T OR10G4 Silent p.Y58Y 0.37 TCGA-66-2793-01 11 128709123 128709123 C A KCNJ1 Missense_Mutation p.C358F 0.63 deleterious(0.03) probably_damaging(0.998) TCGA-66-2793-01 11 133791061 133791061 G C IGSF9B Silent p.G853G 0.04 TCGA-66-2793-01 11 36595199 36595199 G T RAG1 Silent p.G115G 0.27 TCGA-66-2793-01 11 45827872 45827872 T G SLC35C1 Missense_Mutation p.C174G 0.28 deleterious(0) probably_damaging(0.96) TCGA-66-2793-01 11 47380482 47380482 C T SPI1 Missense_Mutation p.G137S 0.40 tolerated(0.4) benign(0.144) TCGA-66-2793-01 11 55136330 55136330 G T OR4A15 Missense_Mutation p.S324I 0.47 deleterious_low_confidence(0.03) benign(0.027) TCGA-66-2793-01 11 55872754 55872754 C A OR8H2 Missense_Mutation p.T79K 0.23 deleterious(0) possibly_damaging(0.891) TCGA-66-2793-01 11 55872756 55872756 C A OR8H2 Missense_Mutation p.P80T 0.22 deleterious(0) probably_damaging(0.931) TCGA-66-2793-01 11 56086588 56086588 C A OR8K3 Missense_Mutation p.T269N 0.58 tolerated_low_confidence(0.06) benign(0.399) TCGA-66-2793-01 11 58206693 58206693 C G OR5B12 Missense_Mutation p.G311A 0.18 tolerated_low_confidence(0.06) benign(0.013) TCGA-66-2793-01 11 608235 608235 G T PHRF1 Missense_Mutation p.G926C 0.49 tolerated(0.06) benign(0.363) TCGA-66-2793-01 11 6220626 6220626 C A OR52W1 Missense_Mutation p.S58Y 0.67 deleterious(0.01) benign(0.259) TCGA-66-2793-01 11 62371615 62371615 C G EML3 Missense_Mutation p.E681Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-66-2793-01 11 62393327 62393327 C A GANAB Missense_Mutation p.G954V 0.57 deleterious(0.01) possibly_damaging(0.662) TCGA-66-2793-01 11 62417264 62417264 A T INTS5 Silent p.P96P 0.62 TCGA-66-2793-01 11 64522800 64522800 A G PYGM Missense_Mutation p.V267A 0.54 deleterious(0) possibly_damaging(0.613) TCGA-66-2793-01 11 64825606 64825606 G C NAALADL1 Missense_Mutation p.T101R 0.33 tolerated(0.39) benign(0.011) TCGA-66-2793-01 11 65119247 65119247 C T DPF2 3'UTR 0.23 TCGA-66-2793-01 11 68582853 68582853 T G CPT1A Missense_Mutation p.Q30H 0.49 tolerated(0.27) benign(0.004) TCGA-66-2793-01 11 6898684 6898684 C A OR10A4 Missense_Mutation p.S269Y 0.54 deleterious(0) benign(0.009) TCGA-66-2793-01 11 7083670 7083670 G A NLRP14 Missense_Mutation p.D971N 0.17 tolerated(0.15) possibly_damaging(0.811) TCGA-66-2793-01 11 73021849 73021849 G C ARHGEF17 Missense_Mutation p.L722F 0.24 tolerated_low_confidence(0.15) benign(0.368) TCGA-66-2793-01 11 73638345 73638345 A C PAAF1 Missense_Mutation p.K373Q 0.23 tolerated(0.06) possibly_damaging(0.655) TCGA-66-2793-01 11 75902837 75902837 G A WNT11 Missense_Mutation p.R221C 0.68 deleterious(0) probably_damaging(0.91) TCGA-66-2793-01 11 78380188 78380188 C T TENM4 Missense_Mutation p.G2401D 0.27 tolerated(0.1) probably_damaging(0.978) TCGA-66-2793-01 11 84028025 84028025 C G DLG2 Intron 0.58 TCGA-66-2793-01 12 102468178 102468178 A G NUP37 Missense_Mutation p.V312A 0.56 tolerated(1) benign(0) TCGA-66-2793-01 12 109520498 109520498 A G USP30 Missense_Mutation p.K300E 0.09 tolerated(0.97) benign(0.005) TCGA-66-2793-01 12 109998843 109998843 A T MMAB Splice_Site p.X195_splice 0.20 TCGA-66-2793-01 12 112669453 112669453 G A HECTD4 Nonsense_Mutation p.Q1876* 0.29 TCGA-66-2793-01 12 113823073 113823073 C G PLBD2 Missense_Mutation p.A424G 0.36 tolerated(0.07) benign(0.183) TCGA-66-2793-01 12 117696860 117696860 C T NOS1 Missense_Mutation p.G815S 0.29 deleterious(0) probably_damaging(1) TCGA-66-2793-01 12 124272399 124272399 C A DNAH10 Silent p.T429T 0.37 TCGA-66-2793-01 12 124841232 124841232 G A NCOR2 Missense_Mutation p.S1066F 0.43 probably_damaging(0.999) TCGA-66-2793-01 12 14798171 14798171 T C GUCY2C Missense_Mutation p.I597V 0.46 deleterious(0.01) benign(0.107) TCGA-66-2793-01 12 21242884 21242884 A G SLCO1B7 Silent p.V589V 0.48 TCGA-66-2793-01 12 31944836 31944836 C T H3F3C Missense_Mutation p.V89I 0.07 tolerated_low_confidence(1) benign(0.001) TCGA-66-2793-01 12 31944972 31944972 A G H3F3C Silent p.P43P 0.08 TCGA-66-2793-01 12 31945071 31945071 T C H3F3C Silent p.K10K 0.10 TCGA-66-2793-01 12 31945144 31945144 T G H3F3C 5'UTR 0.11 TCGA-66-2793-01 12 31945151 31945151 T C H3F3C 5'UTR 0.09 TCGA-66-2793-01 12 335599 335599 C A SLC6A13 Missense_Mutation p.M339I 0.13 deleterious(0) benign(0.398) TCGA-66-2793-01 12 43860461 43860461 A C ADAMTS20 Missense_Mutation p.F454C 0.11 deleterious(0) probably_damaging(0.978) TCGA-66-2793-01 12 48383572 48383572 T G COL2A1 Missense_Mutation p.D347A 0.24 unknown(0) TCGA-66-2793-01 12 49523150 49523150 G C TUBA1B Missense_Mutation p.R84G 0.16 deleterious_low_confidence(0.01) probably_damaging(0.984) TCGA-66-2793-01 12 49689166 49689166 T C PRPH Silent p.R61R 0.45 TCGA-66-2793-01 12 51069161 51069161 C A DIP2B Missense_Mutation p.N282K 0.20 deleterious(0) possibly_damaging(0.885) TCGA-66-2793-01 12 53085745 53085745 T C KRT77 Missense_Mutation p.E480G 0.13 deleterious(0.01) possibly_damaging(0.468) TCGA-66-2793-01 12 53085746 53085746 C A KRT77 Nonsense_Mutation p.E480* 0.13 TCGA-66-2793-01 12 53825169 53825169 G A AMHR2 Missense_Mutation p.R545K 0.27 tolerated_low_confidence(0.1) benign(0.067) TCGA-66-2793-01 12 54686872 54686872 A T NFE2 Silent p.P136P 0.18 TCGA-66-2793-01 12 57146041 57146041 T A PRIM1 Missense_Mutation p.K14N 0.40 tolerated(0.05) benign(0.062) TCGA-66-2793-01 12 7470652 7470652 C G ACSM4 Missense_Mutation p.I265M 0.38 tolerated(0.07) benign(0.334) TCGA-66-2793-01 12 8075526 8075526 A G SLC2A3 Missense_Mutation p.I388T 0.31 deleterious(0) possibly_damaging(0.654) TCGA-66-2793-01 12 82870436 82870436 T A METTL25 Missense_Mutation p.I529N 0.44 tolerated(0.51) benign(0.303) TCGA-66-2793-01 12 97137237 97137237 G T C12orf55 Missense_Mutation p.S2426I 0.24 deleterious(0) benign(0.006) TCGA-66-2793-01 13 109459128 109459128 C G MYO16 Silent p.L259L 0.50 TCGA-66-2793-01 13 111142105 111142105 G T COL4A2 Missense_Mutation p.G1107W 0.11 probably_damaging(0.991) TCGA-66-2793-01 13 21742475 21742475 G C SKA3 Missense_Mutation p.T132S 0.29 tolerated(0.39) benign(0) TCGA-66-2793-01 13 25672105 25672105 A C PABPC3 Missense_Mutation p.Y590S 0.09 tolerated(0.08) benign(0) TCGA-66-2793-01 13 25840394 25840394 T C MTMR6 Missense_Mutation p.Y112C 0.35 deleterious(0) probably_damaging(0.992) TCGA-66-2793-01 13 98865481 98865481 C A FARP1 5'UTR 0.34 TCGA-66-2793-01 14 100173937 100173937 G T CYP46A1 Silent p.L205L 0.33 TCGA-66-2793-01 14 100612983 100612983 C T DEGS2 3'UTR 0.45 TCGA-66-2793-01 14 105398383 105398383 G T PLD4 Missense_Mutation p.A365S 0.11 deleterious(0.04) probably_damaging(0.997) TCGA-66-2793-01 14 105423996 105423996 C T AHNAK2 Silent p.Q23Q 0.40 TCGA-66-2793-01 14 33165250 33165250 G C AKAP6 Missense_Mutation p.M978I 0.16 deleterious(0.01) probably_damaging(0.989) TCGA-66-2793-01 14 37145492 37145492 G C PAX9 Missense_Mutation p.M287I 0.56 tolerated_low_confidence(0.13) possibly_damaging(0.885) TCGA-66-2793-01 14 38016160 38016160 T G MIPOL1 Missense_Mutation p.M438R 0.20 deleterious(0) benign(0.113) TCGA-66-2793-01 14 38678592 38678592 G T SSTR1 5'UTR 0.70 TCGA-66-2793-01 14 65550962 65550962 A C MAX Intron 0.09 TCGA-66-2793-01 14 77709389 77709389 A G TMEM63C Missense_Mutation p.E444G 0.91 deleterious(0.02) probably_damaging(0.992) TCGA-66-2793-01 15 23812425 23812425 T A MKRN3 Missense_Mutation p.L499Q 0.34 deleterious(0) possibly_damaging(0.77) TCGA-66-2793-01 15 29368283 29368283 G A APBA2 Missense_Mutation p.S353N 0.60 deleterious(0.05) benign(0.183) TCGA-66-2793-01 15 34080535 34080535 T C RYR3 Silent p.L3236L 0.56 TCGA-66-2793-01 15 40661237 40661237 C A DISP2 Missense_Mutation p.A975D 0.34 deleterious(0) possibly_damaging(0.541) TCGA-66-2793-01 15 41192573 41192573 C G VPS18 Silent p.T519T 0.09 TCGA-66-2793-01 15 43502602 43502602 C A EPB42 Missense_Mutation p.L225F 0.56 deleterious(0) probably_damaging(1) TCGA-66-2793-01 15 44907619 44907619 G T SPG11 Missense_Mutation p.L994I 0.16 deleterious(0.01) possibly_damaging(0.801) TCGA-66-2793-01 15 75649169 75649169 G A MAN2C1 Silent p.G891G 0.06 TCGA-66-2793-01 15 82335471 82335471 C T MEX3B 3'UTR 0.67 TCGA-66-2793-01 15 90213363 90213363 C A PLIN1 Missense_Mutation p.G149V 0.59 tolerated(0.09) probably_damaging(0.968) TCGA-66-2793-01 15 91428341 91428341 C A FES Silent p.A22A 0.51 TCGA-66-2793-01 15 97326900 97326900 G A SPATA8 Silent p.G5G 0.45 TCGA-66-2793-01 16 11933741 11933741 A G RSL1D1 Silent p.D319D 0.10 TCGA-66-2793-01 16 14989424 14989424 C T NOMO1 Silent p.L1197L 0.27 TCGA-66-2793-01 16 1510933 1510933 T C CLCN7 Missense_Mutation p.E123G 0.08 tolerated(0.1) benign(0.016) TCGA-66-2793-01 16 2035935 2035935 A G GFER Missense_Mutation p.N175S 0.55 deleterious(0) probably_damaging(1) TCGA-66-2793-01 16 2043083 2043083 G A SYNGR3 3'UTR 0.32 TCGA-66-2793-01 16 24581518 24581518 A T RBBP6 Missense_Mutation p.K1169N 0.42 deleterious_low_confidence(0) unknown(0) TCGA-66-2793-01 16 24931229 24931229 C A ARHGAP17 3'UTR 0.32 TCGA-66-2793-01 16 2979987 2979987 C G FLYWCH1 Missense_Mutation p.Q101E 0.25 tolerated_low_confidence(0.32) benign(0.06) TCGA-66-2793-01 16 30715393 30715393 G A SRCAP Silent p.S21S 0.43 TCGA-66-2793-01 16 31391846 31391846 A C ITGAX Silent p.I1059I 0.05 TCGA-66-2793-01 16 3788651 3788651 C A CREBBP Missense_Mutation p.D1435Y 0.20 unknown(0) TCGA-66-2793-01 16 46781653 46781653 G A MYLK3 Silent p.G151G 0.82 TCGA-66-2793-01 16 5108554 5108554 C T C16orf89 Silent p.K189K 0.11 TCGA-66-2793-01 16 66785513 66785513 A C DYNC1LI2 5'UTR 0.39 TCGA-66-2793-01 16 73126856 73126856 C A HCCAT5 RNA 0.81 TCGA-66-2793-01 16 9856920 9856920 G T GRIN2A 3'UTR 0.61 TCGA-66-2793-01 17 11806058 11806058 T C DNAH9 Missense_Mutation p.F3810S 0.93 probably_damaging(0.995) TCGA-66-2793-01 17 17394849 17394849 G A MED9 3'UTR 0.92 TCGA-66-2793-01 17 17910403 17910403 C T LRRC48 Missense_Mutation p.T423I 0.91 tolerated(0.26) benign(0.043) TCGA-66-2793-01 17 20239266 20239266 A T RN7SL17P 5'Flank 0.17 TCGA-66-2793-01 17 26911459 26911459 C T SPAG5 Missense_Mutation p.S734N 0.82 tolerated(0.2) benign(0.004) TCGA-66-2793-01 17 34195806 34195806 A T C17orf66 5'UTR 0.21 TCGA-66-2793-01 17 34797668 34797668 C A TBC1D3G Missense_Mutation p.A490S 0.27 deleterious(0.02) probably_damaging(0.971) TCGA-66-2793-01 17 36704853 36704853 G A SRCIN1 Silent p.P1070P 0.86 TCGA-66-2793-01 17 43922324 43922324 A T SPPL2C Missense_Mutation p.T18S 0.44 tolerated(0.17) benign(0.084) TCGA-66-2793-01 17 46607946 46607946 G C HOXB1 Missense_Mutation p.D107E 0.29 tolerated(0.2) benign(0.073) TCGA-66-2793-01 17 56247896 56247896 A T OR4D2 Missense_Mutation p.M294L 0.31 deleterious(0.01) benign(0.051) TCGA-66-2793-01 17 56344882 56344882 T C LPO Silent p.G622G 0.27 TCGA-66-2793-01 17 62025314 62025314 A G SCN4A Missense_Mutation p.V1085A 0.37 deleterious(0.01) possibly_damaging(0.9) TCGA-66-2793-01 17 73774729 73774729 T C H3F3B Missense_Mutation p.I120V 0.34 deleterious_low_confidence(0.03) benign(0.014) TCGA-66-2793-01 17 74094068 74094068 A T EXOC7 Missense_Mutation p.L150Q 0.47 deleterious(0) probably_damaging(0.993) TCGA-66-2793-01 17 74276381 74276381 T G QRICH2 Missense_Mutation p.E1372A 0.17 deleterious(0.03) benign(0.249) TCGA-66-2793-01 17 74732560 74732560 G C MFSD11 5'UTR 0.15 TCGA-66-2793-01 17 75085349 75085349 T G SEC14L1 5'UTR 0.14 TCGA-66-2793-01 17 7578394 7578394 T A TP53 Missense_Mutation p.H179L 0.85 tolerated(0.12) probably_damaging(1) TCGA-66-2793-01 17 78023868 78023868 G T CCDC40 Silent p.V315V 0.18 TCGA-66-2793-01 17 79974979 79974979 G A ASPSCR1 Silent p.L640L 0.63 TCGA-66-2793-01 18 14478284 14478284 T C CXADRP3 RNA 0.33 TCGA-66-2793-01 18 14534934 14534934 T C POTEC Missense_Mutation p.K295E 0.14 tolerated(0.31) probably_damaging(0.973) TCGA-66-2793-01 18 56892922 56892922 C A GRP Nonsense_Mutation p.S113* 0.59 TCGA-66-2793-01 18 61306559 61306559 C A SERPINB4 Missense_Mutation p.V210L 0.54 deleterious(0.01) benign(0.163) TCGA-66-2793-01 18 67741202 67741202 C A RTTN Missense_Mutation p.R1531S 0.59 tolerated(0.13) benign(0.021) TCGA-66-2793-01 19 15350263 15350263 T G BRD4 Silent p.P1172P 0.08 TCGA-66-2793-01 19 17743602 17743602 A T UNC13A Silent p.P1139P 0.74 TCGA-66-2793-01 19 18123833 18123833 T A ARRDC2 3'UTR 0.24 TCGA-66-2793-01 19 19330015 19330015 A T NCAN Missense_Mutation p.N122I 0.64 deleterious(0) benign(0.206) TCGA-66-2793-01 19 33098591 33098591 C A ANKRD27 Missense_Mutation p.A775S 0.45 tolerated(0.52) benign(0.014) TCGA-66-2793-01 19 36050805 36050806 - A ATP4A Frame_Shift_Ins p.V320Cfs*26 0.30 TCGA-66-2793-01 19 36111134 36111134 G T HAUS5 Missense_Mutation p.R519L 0.27 deleterious(0) possibly_damaging(0.83) TCGA-66-2793-01 19 36546012 36546012 C T WDR62 Nonsense_Mutation p.R47* 0.50 TCGA-66-2793-01 19 39002961 39002961 G A RYR1 Missense_Mutation p.E3104K 0.45 benign(0.003) TCGA-66-2793-01 19 39215195 39215195 C A ACTN4 Missense_Mutation p.T667N 0.28 tolerated(0.54) benign(0.001) TCGA-66-2793-01 19 44223367 44223367 G T IRGC Silent p.S219S 0.44 TCGA-66-2793-01 19 45899647 45899647 C T PPP1R13L Missense_Mutation p.D254N 0.18 deleterious(0.02) benign(0.057) TCGA-66-2793-01 19 47126730 47126730 G A PTGIR Silent p.C251C 0.36 TCGA-66-2793-01 19 47503775 47503775 C - ARHGAP35 Frame_Shift_Del p.G1446Afs*353 0.34 TCGA-66-2793-01 19 47773852 47773852 G C CCDC9 Missense_Mutation p.G331A 0.45 tolerated(0.09) possibly_damaging(0.885) TCGA-66-2793-01 19 47912484 47912484 C G MEIS3 Missense_Mutation p.V244L 0.47 tolerated(0.11) benign(0.1) TCGA-66-2793-01 19 49519409 49519409 G A LHB Silent p.R114R 0.21 TCGA-66-2793-01 19 49519410 49519410 C T LHB Missense_Mutation p.R114H 0.21 tolerated(0.08) benign(0.024) TCGA-66-2793-01 19 49916242 49916242 G A CCDC155 Silent p.E429E 0.09 TCGA-66-2793-01 19 51322435 51322435 G T KLK1 3'UTR 0.41 TCGA-66-2793-01 19 54385852 54385852 G A PRKCG Missense_Mutation p.S35N 0.22 tolerated(0.21) benign(0.001) TCGA-66-2793-01 19 54967990 54967990 G A LENG8 Missense_Mutation p.A541T 0.42 tolerated(0.28) benign(0.108) TCGA-66-2793-01 19 54976300 54976300 G C CDC42EP5 Missense_Mutation p.D144E 0.29 tolerated_low_confidence(0.27) benign(0.219) TCGA-66-2793-01 19 55645563 55645563 A G TNNT1 Silent p.S207S 0.90 TCGA-66-2793-01 19 56180949 56180949 A T U2AF2 Missense_Mutation p.Y395F 0.42 tolerated(0.05) possibly_damaging(0.45) TCGA-66-2793-01 19 56485171 56485171 T A NLRP8 Nonsense_Mutation p.C896* 0.17 TCGA-66-2793-01 19 57328279 57328279 C A PEG3 Nonsense_Mutation p.G511* 0.38 TCGA-66-2793-01 19 58806422 58806422 G C ZNF8 Missense_Mutation p.Q416H 0.05 deleterious(0.01) probably_damaging(0.992) TCGA-66-2793-01 19 9083436 9083436 C A MUC16 Missense_Mutation p.Q2793H 0.76 unknown(0) TCGA-66-2793-01 1 110950301 110950301 C A LAMTOR5 Missense_Mutation p.C63F 0.87 tolerated_low_confidence(0.38) benign(0.002) TCGA-66-2793-01 1 151955756 151955756 C T S100A10 Silent p.L59L 0.38 TCGA-66-2793-01 1 156556392 156556392 G A TTC24 3'UTR 0.33 TCGA-66-2793-01 1 157666083 157666083 C A FCRL3 Silent p.R293R 0.47 TCGA-66-2793-01 1 160465888 160465888 G T SLAMF6 Silent p.T115T 0.35 TCGA-66-2793-01 1 169775194 169775194 T C C1orf112 Silent p.H176H 0.31 TCGA-66-2793-01 1 170024518 170024518 T C KIFAP3 Missense_Mutation p.Y31C 0.40 deleterious(0) probably_damaging(1) TCGA-66-2793-01 1 171154984 171154984 A T FMO2 Missense_Mutation p.K44N 0.04 tolerated(0.07) possibly_damaging(0.784) TCGA-66-2793-01 1 171251339 171251339 C A FMO1 Silent p.A350A 0.51 TCGA-66-2793-01 1 176838084 176838084 C A ASTN1 Silent p.L1181L 0.45 TCGA-66-2793-01 1 186276446 186276446 C G PRG4 Missense_Mutation p.T532S 0.41 unknown(0) TCGA-66-2793-01 1 196918750 196918750 A G CFHR2 Missense_Mutation p.E75G 0.46 tolerated(0.09) probably_damaging(0.999) TCGA-66-2793-01 1 201009495 201009495 C A CACNA1S Missense_Mutation p.R1745M 0.53 deleterious_low_confidence(0.04) benign(0.061) TCGA-66-2793-01 1 204412671 204412684 CAGATACTGGTAGC - PIK3C2B Frame_Shift_Del p.R970Pfs*17 0.51 TCGA-66-2793-01 1 207103661 207103661 G A PIGR 3'UTR 0.40 TCGA-66-2793-01 1 215956148 215956148 G T USH2A Missense_Mutation p.T3506K 0.33 benign(0.001) TCGA-66-2793-01 1 222713639 222713639 G C HHIPL2 Missense_Mutation p.A388G 0.15 tolerated(0.43) benign(0.011) TCGA-66-2793-01 1 228491566 228491566 G C OBSCN Silent p.L4643L 0.45 TCGA-66-2793-01 1 237044071 237044071 A C MTR Missense_Mutation p.K871Q 0.15 deleterious(0) probably_damaging(1) TCGA-66-2793-01 1 247588913 247588913 C T NLRP3 Intron 0.77 TCGA-66-2793-01 1 248028195 248028195 G T TRIM58 Missense_Mutation p.E235D 0.88 deleterious(0.02) possibly_damaging(0.728) TCGA-66-2793-01 1 27094376 27094377 GG C ARID1A Frame_Shift_Del p.A1029Pfs*10 0.40 TCGA-66-2793-01 1 40319520 40319520 G C TRIT1 Intron 0.22 TCGA-66-2793-01 1 41013142 41013142 T A ZNF684 3'UTR 0.71 TCGA-66-2793-01 1 53099337 53099337 T A FAM159A Missense_Mutation p.W58R 0.27 deleterious(0) probably_damaging(0.998) TCGA-66-2793-01 1 53393052 53393052 C G SCP2 5'UTR 0.50 TCGA-66-2793-01 1 64643305 64643305 G A ROR1 Missense_Mutation p.M527I 0.65 tolerated(0.31) benign(0.039) TCGA-66-2793-01 1 75679476 75679476 C A SLC44A5 Missense_Mutation p.V626F 0.53 deleterious(0) possibly_damaging(0.883) TCGA-66-2793-01 1 76363642 76363642 C T MSH4 Silent p.A802A 0.65 TCGA-66-2793-01 1 86921073 86921073 G A CLCA2 Missense_Mutation p.D899N 0.12 tolerated(0.11) possibly_damaging(0.776) TCGA-66-2793-01 1 87025691 87025691 T G CLCA4 Nonsense_Mutation p.L79* 0.17 TCGA-66-2793-01 1 93301883 93301883 C T RPL5 Missense_Mutation p.T154I 0.34 deleterious(0.03) benign(0.003) TCGA-66-2793-01 1 94461693 94461693 C G ABCA4 Missense_Mutation p.R2263P 0.27 deleterious(0) probably_damaging(0.954) TCGA-66-2793-01 20 1961097 1961097 G A PDYN Missense_Mutation p.R213C 0.12 deleterious(0) probably_damaging(1) TCGA-66-2793-01 20 21695303 21695303 A C PAX1 Silent p.G489G 0.46 TCGA-66-2793-01 20 34797717 34797717 G T EPB41L1 Missense_Mutation p.R659L 0.39 tolerated(0.15) benign(0.017) TCGA-66-2793-01 20 35521154 35521154 A G SAMHD1 3'UTR 0.82 TCGA-66-2793-01 20 49620725 49620725 G A KCNG1 Missense_Mutation p.R465C 0.36 deleterious(0) probably_damaging(0.999) TCGA-66-2793-01 20 52569971 52569971 C A BCAS1 Silent p.L560L 0.53 TCGA-66-2793-01 20 60889444 60889444 A T LAMA5 Missense_Mutation p.V2807E 0.67 benign(0.059) TCGA-66-2793-01 20 60988599 60988599 G C RBBP8NL Missense_Mutation p.D511E 0.23 tolerated(0.69) benign(0.006) TCGA-66-2793-01 20 61467648 61467648 C A COL9A3 Missense_Mutation p.P504Q 0.54 tolerated(1) benign(0.116) TCGA-66-2793-01 20 62198285 62198285 T A HELZ2 Missense_Mutation p.E809V 0.42 deleterious(0) probably_damaging(0.978) TCGA-66-2793-01 20 8698470 8698470 G T PLCB1 Missense_Mutation p.M496I 0.53 tolerated(0.48) benign(0) TCGA-66-2793-01 21 45472274 45472274 G T TRAPPC10 Missense_Mutation p.K133N 0.81 deleterious(0.02) benign(0.347) TCGA-66-2793-01 22 20936938 20936938 C A MED15 Missense_Mutation p.P438Q 0.08 deleterious(0.01) unknown(0) TCGA-66-2793-01 22 21062353 21062353 C T PI4KA Silent p.Q2097Q 0.03 TCGA-66-2793-01 22 21384302 21384302 G T SLC7A4 Missense_Mutation p.H441N 0.08 tolerated(0.5) benign(0.045) TCGA-66-2793-01 22 23165763 23165763 T C IGLV2-8 Missense_Mutation p.Y112H 0.75 deleterious_low_confidence(0.03) probably_damaging(0.917) TCGA-66-2793-01 22 30416323 30416323 G A MTMR3 Missense_Mutation p.R892K 0.75 tolerated_low_confidence(0.98) benign(0.003) TCGA-66-2793-01 22 32756521 32756521 G A RFPL3 Missense_Mutation p.S219N 0.88 tolerated(0.08) possibly_damaging(0.739) TCGA-66-2793-01 22 37425399 37425399 C A MPST Silent p.A266A 0.89 TCGA-66-2793-01 22 43604080 43604080 T C SCUBE1 Missense_Mutation p.D911G 0.15 deleterious(0) probably_damaging(0.999) TCGA-66-2793-01 2 111551742 111551742 C G ACOXL Silent p.L112L 0.33 TCGA-66-2793-01 2 119604502 119604502 G - EN1 Frame_Shift_Del p.P81Rfs*31 0.64 TCGA-66-2793-01 2 120889260 120889260 G T EPB41L5 Missense_Mutation p.R523L 0.49 tolerated(0.67) benign(0.037) TCGA-66-2793-01 2 125261961 125261961 C A CNTNAP5 Silent p.P384P 0.58 TCGA-66-2793-01 2 127451481 127451481 G C GYPC Missense_Mutation p.E50Q 0.20 tolerated(0.57) benign(0.048) TCGA-66-2793-01 2 128281368 128281368 C G IWS1 Splice_Site p.X12_splice 0.04 TCGA-66-2793-01 2 131459876 131459876 T A FAR2P3 RNA 1.00 TCGA-66-2793-01 2 136873055 136873055 C T CXCR4 Missense_Mutation p.R152K 0.22 tolerated(0.29) benign(0.082) TCGA-66-2793-01 2 139316613 139316613 G A SPOPL Missense_Mutation p.V168I 0.26 tolerated(0.27) benign(0.002) TCGA-66-2793-01 2 140990873 140990873 A T LRP1B Missense_Mutation p.V4561E 0.43 benign(0.403) TCGA-66-2793-01 2 152373009 152373009 G A NEB Silent p.Y7623Y 0.31 TCGA-66-2793-01 2 160289371 160289371 G C BAZ2B Silent p.P599P 0.39 TCGA-66-2793-01 2 165378553 165378553 C T GRB14 Nonsense_Mutation p.W251* 0.55 TCGA-66-2793-01 2 167133841 167133841 G T SCN9A Silent p.V831V 0.27 TCGA-66-2793-01 2 178097931 178097931 T C NFE2L2 Intron 0.67 TCGA-66-2793-01 2 178879150 178879150 C G PDE11A Missense_Mutation p.G317A 0.69 deleterious(0) probably_damaging(0.995) TCGA-66-2793-01 2 179365792 179365792 A T PLEKHA3 Missense_Mutation p.S222C 0.33 tolerated(0.08) possibly_damaging(0.503) TCGA-66-2793-01 2 179594842 179594842 G T TTN Missense_Mutation p.S6095R 0.21 TCGA-66-2793-01 2 201531423 201531423 A G AOX1 Missense_Mutation p.D1186G 0.23 deleterious(0) probably_damaging(0.96) TCGA-66-2793-01 2 220439984 220439984 G T INHA Missense_Mutation p.W279C 0.56 deleterious(0) probably_damaging(1) TCGA-66-2793-01 2 223065962 223065962 A G PAX3 Intron 0.23 TCGA-66-2793-01 2 26695482 26695482 C A OTOF Missense_Mutation p.G1257W 0.57 deleterious(0.04) possibly_damaging(0.621) TCGA-66-2793-01 2 27322328 27322328 G T KHK Missense_Mutation p.A232S 0.20 deleterious(0) possibly_damaging(0.879) TCGA-66-2793-01 2 27802639 27802639 T A C2orf16 Missense_Mutation p.L1067H 0.50 tolerated(0.06) benign(0.438) TCGA-66-2793-01 2 27850557 27850557 C G CCDC121 Missense_Mutation p.R199T 0.49 tolerated(0.07) benign(0.122) TCGA-66-2793-01 2 32264513 32264513 G C DPY30 Missense_Mutation p.Q5E 0.13 tolerated(0.05) probably_damaging(0.952) TCGA-66-2793-01 2 32475124 32475124 G - NLRC4 Frame_Shift_Del p.N604Ifs*69 0.35 TCGA-66-2793-01 2 37873049 37873049 T A CDC42EP3 Missense_Mutation p.T228S 0.37 deleterious(0.03) benign(0.13) TCGA-66-2793-01 2 48822499 48822499 A T STON1 3'UTR 0.16 TCGA-66-2793-01 2 50464025 50464025 C A NRXN1 Missense_Mutation p.D1190Y 0.29 deleterious(0) probably_damaging(1) TCGA-66-2793-01 2 54856704 54856704 C G SPTBN1 Silent p.P811P 0.13 TCGA-66-2793-01 2 74328283 74328283 G C TET3 Missense_Mutation p.W1321C 0.15 tolerated(0.1) benign(0.427) TCGA-66-2793-01 2 74659630 74659630 C A RTKN Missense_Mutation p.R92L 0.59 tolerated(0.34) possibly_damaging(0.908) TCGA-66-2793-01 2 89278083 89278083 A T IGKV3-7 Missense_Mutation p.S84R 0.73 deleterious(0.01) benign(0.379) TCGA-66-2793-01 3 100364825 100364825 A T GPR128 Missense_Mutation p.N328I 0.17 deleterious(0) probably_damaging(0.973) TCGA-66-2793-01 3 10417275 10417275 C T ATP2B2 Missense_Mutation p.D419N 0.85 tolerated(0.21) benign(0.024) TCGA-66-2793-01 3 112998289 112998289 G T BOC Silent p.T669T 0.10 TCGA-66-2793-01 3 113956064 113956064 G T ZNF80 5'UTR 0.74 TCGA-66-2793-01 3 122003505 122003505 C G CASR Missense_Mutation p.L912V 0.19 tolerated_low_confidence(0.32) benign(0.002) TCGA-66-2793-01 3 131101028 131101028 A C NUDT16 Missense_Mutation p.T93P 0.14 tolerated_low_confidence(0.08) benign(0.016) TCGA-66-2793-01 3 139279867 139279867 C G NMNAT3 Missense_Mutation p.E211D 0.43 tolerated_low_confidence(0.22) benign(0.001) TCGA-66-2793-01 3 14200326 14200326 C A XPC Missense_Mutation p.V353F 0.81 deleterious(0.05) benign(0.197) TCGA-66-2793-01 3 145913054 145913054 C T PLSCR4 Missense_Mutation p.G268S 0.34 tolerated(0.33) probably_damaging(0.999) TCGA-66-2793-01 3 164786518 164786518 G C SI Missense_Mutation p.R159G 0.29 deleterious(0.01) probably_damaging(0.91) TCGA-66-2793-01 3 182616502 182616502 A G ATP11B Missense_Mutation p.D1087G 0.23 deleterious(0) probably_damaging(0.98) TCGA-66-2793-01 3 184069806 184069806 G C CLCN2 Missense_Mutation p.H804D 0.15 tolerated(0.06) probably_damaging(0.989) TCGA-66-2793-01 3 187451445 187451445 G C BCL6 Missense_Mutation p.R13G 0.36 deleterious(0) probably_damaging(0.998) TCGA-66-2793-01 3 196304528 196304528 A T FBXO45 Missense_Mutation p.T175S 0.13 tolerated(0.09) possibly_damaging(0.462) TCGA-66-2793-01 3 38081085 38081085 C T DLEC1 Silent p.S123S 0.06 TCGA-66-2793-01 3 38307523 38307523 C T SLC22A13 Missense_Mutation p.H58Y 0.75 tolerated(1) benign(0.002) TCGA-66-2793-01 3 42299721 42299721 G T CCK Missense_Mutation p.P73T 0.79 deleterious(0.02) probably_damaging(1) TCGA-66-2793-01 3 44816805 44816805 G C KIF15 Missense_Mutation p.G41A 0.05 tolerated(0.26) possibly_damaging(0.454) TCGA-66-2793-01 3 49051126 49051126 G C WDR6 Missense_Mutation p.G750A 0.82 tolerated(0.2) benign(0.154) TCGA-66-2793-01 3 49836190 49836190 G A CDHR4 Intron 0.67 TCGA-66-2793-01 3 9781412 9781412 C T BRPF1 Silent p.Y443Y 0.70 TCGA-66-2793-01 4 100336772 100340140 4:100336772-100340140 - ADH7 large deletion p.X341_splice 0.29 TCGA-66-2793-01 4 110864592 110864592 G A EGF Splice_Site p.X170_splice 0.79 TCGA-66-2793-01 4 115767116 115767116 T C NDST4 Missense_Mutation p.S660G 0.83 tolerated(0.06) benign(0.009) TCGA-66-2793-01 4 123350799 123350799 C A ADAD1 Missense_Mutation p.Q546K 0.97 deleterious(0.02) possibly_damaging(0.777) TCGA-66-2793-01 4 123814314 123814314 C A NUDT6 Missense_Mutation p.S207I 0.78 deleterious(0) probably_damaging(0.999) TCGA-66-2793-01 4 156784654 156784657 ACCT - ASIC5 Frame_Shift_Del p.E97Vfs*12 0.39 TCGA-66-2793-01 4 20611673 20611673 G T SLIT2 Nonsense_Mutation p.E1244* 0.35 TCGA-66-2793-01 4 2951818 2951818 G C NOP14 Missense_Mutation p.S375R 0.02 deleterious(0.05) possibly_damaging(0.485) TCGA-66-2793-01 4 40245254 40245254 A G RHOH Missense_Mutation p.Y83C 0.60 deleterious(0) probably_damaging(0.923) TCGA-66-2793-01 4 41984446 41984446 G A DCAF4L1 Missense_Mutation p.V213M 0.55 deleterious(0.02) benign(0.332) TCGA-66-2793-01 4 57522135 57522135 T A HOPX Missense_Mutation p.E29V 0.55 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-66-2793-01 4 70866662 70866662 T A STATH Missense_Mutation p.F62Y 0.38 deleterious_low_confidence(0) unknown(0) TCGA-66-2793-01 4 73164143 73164143 T A ADAMTS3 Missense_Mutation p.N814I 0.82 deleterious(0.02) benign(0.125) TCGA-66-2793-01 5 13700970 13700970 C A DNAH5 Missense_Mutation p.R4501L 0.84 possibly_damaging(0.569) TCGA-66-2793-01 5 140214241 140214241 C A PCDHA7 Missense_Mutation p.D91E 0.79 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-66-2793-01 5 140475550 140475550 T C PCDHB2 Silent p.P392P 0.35 TCGA-66-2793-01 5 158585996 158585996 T G RNF145 Silent p.A588A 0.92 TCGA-66-2793-01 5 176306396 176306396 T C UNC5A Missense_Mutation p.F757S 0.84 tolerated(0.25) benign(0.231) TCGA-66-2793-01 5 32312944 32312944 T A MTMR12 Translation_Start_Site p.M1? 0.73 deleterious_low_confidence(0) unknown(0) TCGA-66-2793-01 5 3599381 3599381 G A IRX1 Missense_Mutation p.A107T 0.85 deleterious(0.04) probably_damaging(0.959) TCGA-66-2793-01 5 68669760 68669760 G A RAD17 Missense_Mutation p.R49K 0.81 tolerated(0.38) benign(0.001) TCGA-66-2793-01 5 72419209 72419209 T G TMEM171 Silent p.P3P 0.76 TCGA-66-2793-01 5 72419210 72419210 G C TMEM171 Missense_Mutation p.A4P 0.76 tolerated(0.08) possibly_damaging(0.555) TCGA-66-2793-01 5 79033024 79033024 G C CMYA5 Silent p.L2812L 0.77 TCGA-66-2793-01 5 79854635 79854635 A G ANKRD34B Missense_Mutation p.S402P 0.41 tolerated(0.08) benign(0.008) TCGA-66-2793-01 5 88100564 88100564 C A MEF2C Missense_Mutation p.V37L 0.82 deleterious(0.03) probably_damaging(0.99) TCGA-66-2793-01 6 107390285 107390285 C A BEND3 Missense_Mutation p.D704Y 0.54 deleterious(0) possibly_damaging(0.905) TCGA-66-2793-01 6 108497813 108497813 G A NR2E1 Silent p.S122S 0.36 TCGA-66-2793-01 6 128388874 128388874 C T PTPRK Missense_Mutation p.M649I 0.04 tolerated(0.54) benign(0.012) TCGA-66-2793-01 6 132938669 132938669 C A TAAR2 Missense_Mutation p.V226L 0.49 tolerated(0.61) benign(0.032) TCGA-66-2793-01 6 152557956 152557956 T C SYNE1 Missense_Mutation p.Y6732C 0.61 possibly_damaging(0.507) TCGA-66-2793-01 6 25619690 25619690 G T LRRC16A Missense_Mutation p.W1332L 0.88 tolerated_low_confidence(0.48) benign(0.001) TCGA-66-2793-01 6 25619691 25619691 G T LRRC16A Missense_Mutation p.W1332C 0.86 tolerated_low_confidence(0.1) possibly_damaging(0.447) TCGA-66-2793-01 6 26216792 26216795 CCAT - HIST1H2BG Frame_Shift_Del p.D26Afs*20 0.32 TCGA-66-2793-01 6 31627280 31627280 C T C6orf47 Missense_Mutation p.G149S 0.34 tolerated_low_confidence(0.24) benign(0.359) TCGA-66-2793-01 6 348884 348884 C A DUSP22 Intron 0.14 TCGA-66-2793-01 6 34985263 34985263 C A ANKS1A Missense_Mutation p.S479R 0.63 tolerated(0.08) benign(0.001) TCGA-66-2793-01 6 35837488 35837488 T A SRPK1 Missense_Mutation p.E394D 0.52 tolerated(0.24) benign(0.002) TCGA-66-2793-01 6 47976433 47976433 T C PTCHD4 Missense_Mutation p.I282V 0.28 deleterious(0.03) benign(0.114) TCGA-66-2793-01 6 50803938 50803938 C G TFAP2B Missense_Mutation p.R256G 0.12 deleterious(0) probably_damaging(0.994) TCGA-66-2793-01 6 90660874 90660874 G A BACH2 Silent p.A317A 0.39 TCGA-66-2793-01 7 105148856 105148856 A G PUS7 Missense_Mutation p.L35P 0.26 deleterious_low_confidence(0) benign(0.229) TCGA-66-2793-01 7 106515250 106515250 T G PIK3CG Splice_Site p.X797_splice 0.37 TCGA-66-2793-01 7 107398922 107398922 G A CBLL1 Missense_Mutation p.D259N 0.36 tolerated(0.13) benign(0.12) TCGA-66-2793-01 7 114299712 114299712 A T FOXP2 Missense_Mutation p.N569I 0.42 deleterious(0) probably_damaging(0.995) TCGA-66-2793-01 7 116937856 116937856 C G WNT2 Missense_Mutation p.W221C 0.35 deleterious(0) probably_damaging(0.999) TCGA-66-2793-01 7 120884320 120884320 C A CPED1 Silent p.T746T 0.36 TCGA-66-2793-01 7 121942040 121942040 C A FEZF1 3'UTR 0.45 TCGA-66-2793-01 7 134617933 134617933 A G CALD1 Missense_Mutation p.Q138R 0.47 tolerated(0.07) unknown(0) TCGA-66-2793-01 7 142612555 142612555 T A TRPV5 Splice_Site p.X404_splice 0.40 TCGA-66-2793-01 7 142836814 142836814 A T PIP 3'UTR 0.46 TCGA-66-2793-01 7 143701233 143701233 G C OR6B1 Missense_Mutation p.L48F 0.23 deleterious(0.01) possibly_damaging(0.839) TCGA-66-2793-01 7 155599110 155599110 T G SHH Missense_Mutation p.I148L 0.46 deleterious(0) benign(0.153) TCGA-66-2793-01 7 156476708 156476708 A - LMBR1 3'UTR 0.30 TCGA-66-2793-01 7 38304988 38304988 C A TRGC1 Missense_Mutation p.G98V 0.12 deleterious(0.01) possibly_damaging(0.778) TCGA-66-2793-01 7 44556465 44556465 C T NPC1L1 Missense_Mutation p.C1146Y 0.45 deleterious(0) probably_damaging(0.996) TCGA-66-2793-01 7 48284217 48284217 C A ABCA13 Missense_Mutation p.P436H 0.64 possibly_damaging(0.807) TCGA-66-2793-01 7 53103566 53103566 T A POM121L12 Missense_Mutation p.W68R 0.50 tolerated(0.39) probably_damaging(0.934) TCGA-66-2793-01 7 55468869 55468869 A G LANCL2 Silent p.V227V 0.48 TCGA-66-2793-01 7 56151350 56151350 C G PHKG1 Missense_Mutation p.E158Q 0.23 tolerated(0.1) probably_damaging(0.974) TCGA-66-2793-01 7 71036319 71036319 G T WBSCR17 Missense_Mutation p.G338C 0.41 deleterious(0) probably_damaging(0.988) TCGA-66-2793-01 7 71036320 71036320 G C WBSCR17 Missense_Mutation p.G338A 0.42 deleterious(0.03) benign(0.177) TCGA-66-2793-01 7 75168751 75168751 C G HIP1 Missense_Mutation p.V985L 0.47 deleterious(0.01) probably_damaging(0.91) TCGA-66-2793-01 7 98449145 98449145 G A TMEM130 Missense_Mutation p.T302I 0.42 deleterious(0) probably_damaging(0.915) TCGA-66-2793-01 8 100146904 100146904 A T VPS13B Missense_Mutation p.K417N 0.41 deleterious(0) possibly_damaging(0.788) TCGA-66-2793-01 8 101717188 101717188 T G PABPC1 Missense_Mutation p.H595P 0.03 deleterious(0.04) possibly_damaging(0.835) TCGA-66-2793-01 8 107773438 107773438 G C ABRA Missense_Mutation p.R325G 0.40 tolerated(0.09) benign(0.011) TCGA-66-2793-01 8 110530513 110530513 C T PKHD1L1 Missense_Mutation p.T3936I 0.43 deleterious(0.02) benign(0.021) TCGA-66-2793-01 8 124384043 124384043 C T ATAD2 Missense_Mutation p.A135T 0.39 tolerated_low_confidence(1) benign(0) TCGA-66-2793-01 8 139164259 139164259 C - FAM135B Frame_Shift_Del p.G820Efs*13 0.26 TCGA-66-2793-01 8 140630833 140630833 C T KCNK9 Missense_Mutation p.A265T 0.25 tolerated(0.4) benign(0.006) TCGA-66-2793-01 8 143996633 143996633 A G CYP11B2 Silent p.L142L 0.35 TCGA-66-2793-01 8 144358475 144358475 A G GLI4 Missense_Mutation p.Y211C 0.45 deleterious(0) probably_damaging(1) TCGA-66-2793-01 8 144993528 144993528 C A PLEC Silent p.V3624V 0.30 TCGA-66-2793-01 8 145109557 145109557 C A OPLAH Missense_Mutation p.G865C 0.37 deleterious(0) probably_damaging(1) TCGA-66-2793-01 8 163494 163494 T C RPL23AP53 RNA 0.75 TCGA-66-2793-01 8 2092844 2092844 C T MYOM2 Missense_Mutation p.A1446V 0.83 tolerated(0.3) benign(0.001) TCGA-66-2793-01 8 27098712 27098712 G C STMN4 Silent p.T86T 0.22 TCGA-66-2793-01 8 30469975 30469975 A G GTF2E2 Silent p.I130I 0.47 TCGA-66-2793-01 8 36663865 36663865 T C KCNU1 Missense_Mutation p.F183L 0.25 deleterious(0) probably_damaging(0.969) TCGA-66-2793-01 8 71069263 71069263 C T NCOA2 Missense_Mutation p.G446E 0.50 tolerated(0.24) possibly_damaging(0.701) TCGA-66-2793-01 8 77618098 77618098 G A ZFHX4 Missense_Mutation p.G592D 0.52 probably_damaging(0.969) TCGA-66-2793-01 8 77766431 77766431 C A ZFHX4 Missense_Mutation p.T2425N 0.50 benign(0.086) TCGA-66-2793-01 8 87683244 87683244 G T CNGB3 Missense_Mutation p.Q141K 0.40 deleterious(0) benign(0.029) TCGA-66-2793-01 9 103035213 103035213 G T INVS Missense_Mutation p.G547C 0.82 deleterious(0) probably_damaging(0.997) TCGA-66-2793-01 9 124535710 124535710 G C DAB2IP Missense_Mutation p.R940T 0.90 deleterious(0.04) benign(0.441) TCGA-66-2793-01 9 139402411 139402424 CAGGAGTAGCCGCC - NOTCH1 Frame_Shift_Del p.G1165Qfs*13 0.65 TCGA-66-2793-01 9 32543732 32543732 C A TOPORS Missense_Mutation p.R264L 0.73 deleterious(0) probably_damaging(0.981) TCGA-66-2793-01 9 5231522 5231522 G T INSL4 5'UTR 0.79 TCGA-66-2793-01 9 88924922 88924922 T C ZCCHC6 Missense_Mutation p.N1130S 1.00 deleterious(0) probably_damaging(0.999) TCGA-66-2793-01 9 94172709 94172709 T C NFIL3 Missense_Mutation p.N103S 0.07 tolerated(0.32) benign(0.186) TCGA-66-2793-01 9 97088171 97088171 G T NUTM2F Missense_Mutation p.S21Y 0.89 deleterious(0) probably_damaging(0.999) TCGA-66-2793-01 X 106797621 106797621 C A FRMPD3 Missense_Mutation p.Q250K 0.62 deleterious(0.01) benign(0.38) TCGA-66-2793-01 X 11682385 11682385 G T ARHGAP6 Missense_Mutation p.H188Q 0.86 tolerated_low_confidence(0.21) benign(0.002) TCGA-66-2793-01 X 119572942 119572942 C A LAMP2 Intron 0.94 TCGA-66-2793-01 X 119572944 119572944 G T LAMP2 Intron 0.94 TCGA-66-2793-01 X 135825761 135825761 C T ARHGEF6 Missense_Mutation p.R215H 0.84 deleterious(0) probably_damaging(0.922) TCGA-66-2793-01 X 1409238 1409238 G A CSF2RA Missense_Mutation p.R161K 0.32 tolerated(0.97) benign(0.006) TCGA-66-2793-01 X 145075811 145075811 G A MIR890 RNA 0.95 TCGA-66-2793-01 X 151996476 151996476 T A CETN2 Splice_Site p.X144_splice 0.86 TCGA-66-2793-01 X 152087616 152087616 A G ZNF185 Missense_Mutation p.Q174R 0.97 deleterious(0) possibly_damaging(0.791) TCGA-66-2793-01 X 153578190 153578190 C T FLNA Missense_Mutation p.G2460D 0.07 deleterious(0) probably_damaging(0.921) TCGA-66-2793-01 X 1585160 1585160 C A P2RY8 Missense_Mutation p.V98L 0.69 tolerated(0.68) benign(0.013) TCGA-66-2793-01 X 16836853 16836853 G C TXLNG Missense_Mutation p.D87H 0.96 deleterious(0.04) benign(0.438) TCGA-66-2793-01 X 73066592 73066592 C A XIST RNA 0.81 TCGA-66-2793-01 X 90691787 90691787 T C PABPC5 3'UTR 0.88 TCGA-66-2793-01 X 91132465 91132465 G T PCDH11X Missense_Mutation p.R409M 0.70 deleterious(0) probably_damaging(0.986) TCGA-66-2794-01 10 116887419 116887419 G A ATRNL1 Missense_Mutation p.G185D 0.23 deleterious(0) probably_damaging(1) TCGA-66-2794-01 10 119307842 119307842 T C EMX2 3'UTR 0.17 TCGA-66-2794-01 10 127760061 127760061 G A ADAM12 Silent p.D439D 0.26 TCGA-66-2794-01 10 1313259 1313259 G A ADARB2 Silent p.F361F 0.26 TCGA-66-2794-01 10 13330438 13330438 G T PHYH Missense_Mutation p.S200R 0.28 deleterious(0.01) benign(0.011) TCGA-66-2794-01 10 25010917 25010917 A G ARHGAP21 5'UTR 0.29 TCGA-66-2794-01 10 33199223 33199223 C T ITGB1 Missense_Mutation p.D698N 0.28 tolerated(0.79) probably_damaging(0.997) TCGA-66-2794-01 10 67680201 67680201 T A CTNNA3 Missense_Mutation p.I859F 0.25 deleterious(0) unknown(0) TCGA-66-2794-01 10 68040305 68040305 C T CTNNA3 Missense_Mutation p.D603N 0.21 deleterious(0.04) unknown(0) TCGA-66-2794-01 10 79588710 79588710 G T DLG5 Missense_Mutation p.A740D 0.25 deleterious(0) probably_damaging(0.999) TCGA-66-2794-01 10 82185670 82185670 G A FAM213A Missense_Mutation p.V107I 0.07 tolerated(0.37) benign(0.021) TCGA-66-2794-01 11 30930511 30930511 T C DCDC1 Silent p.E1300E 0.34 TCGA-66-2794-01 11 33620605 33620605 C G KIAA1549L Intron 0.29 TCGA-66-2794-01 11 55595392 55595392 G C OR5L2 Missense_Mutation p.S233T 0.03 deleterious(0) benign(0.09) TCGA-66-2794-01 11 55944170 55944170 T G OR5J2 Missense_Mutation p.V26G 0.27 tolerated(0.34) benign(0.14) TCGA-66-2794-01 11 56468176 56468176 G A OR9G1 Missense_Mutation p.G105R 0.10 tolerated(0.12) benign(0.092) TCGA-66-2794-01 11 58207516 58207516 G C OR5B12 Missense_Mutation p.L37V 0.31 tolerated_low_confidence(0.43) benign(0.01) TCGA-66-2794-01 11 62339045 62339045 G A EEF1G Silent p.F115F 0.31 TCGA-66-2794-01 11 62340129 62340129 G C EEF1G Missense_Mutation p.S33C 0.29 tolerated(0.05) benign(0.111) TCGA-66-2794-01 11 67287587 67287587 G T CABP2 Missense_Mutation p.P142T 0.23 deleterious(0.02) benign(0.014) TCGA-66-2794-01 11 7111037 7111037 G A RBMXL2 Missense_Mutation p.R229Q 0.25 tolerated(0.05) benign(0.238) TCGA-66-2794-01 11 76956540 76956540 G T GDPD4 Missense_Mutation p.P291Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-66-2794-01 12 10875467 10875467 C G YBX3 Missense_Mutation p.A82P 0.33 tolerated(0.06) unknown(0) TCGA-66-2794-01 12 108910749 108910749 G C FICD 5'UTR 0.18 TCGA-66-2794-01 12 110950672 110950672 G C RAD9B Missense_Mutation p.M159I 0.25 tolerated(0.05) benign(0.006) TCGA-66-2794-01 12 119419763 119419763 C A SRRM4 Missense_Mutation p.P26T 0.17 deleterious_low_confidence(0.03) unknown(0) TCGA-66-2794-01 12 124163771 124163771 C T TCTN2 Missense_Mutation p.P167S 0.23 deleterious(0.02) benign(0.411) TCGA-66-2794-01 12 124352116 124352116 A T DNAH10 Nonsense_Mutation p.K2306* 0.49 TCGA-66-2794-01 12 21349929 21349929 G A SLCO1B1 Nonsense_Mutation p.W259* 0.34 TCGA-66-2794-01 12 40013458 40013458 T A ABCD2 5'UTR 0.11 TCGA-66-2794-01 12 50048058 50048058 C A FMNL3 Missense_Mutation p.V330L 0.37 deleterious(0) probably_damaging(0.957) TCGA-66-2794-01 12 69968110 69968110 T C FRS2 Missense_Mutation p.V301A 0.21 tolerated(0.62) benign(0.001) TCGA-66-2794-01 12 7477188 7477188 C T ACSM4 Silent p.R510R 0.12 TCGA-66-2794-01 12 75437012 75437012 T G KCNC2 Missense_Mutation p.K597T 0.27 deleterious_low_confidence(0.01) benign(0.014) TCGA-66-2794-01 12 8758043 8758043 G A AICDA Silent p.I65I 0.12 TCGA-66-2794-01 12 9000285 9000285 C A A2ML1 Missense_Mutation p.S608R 0.33 deleterious(0) possibly_damaging(0.726) TCGA-66-2794-01 13 107209491 107209491 G A ARGLU1 Intron 0.19 TCGA-66-2794-01 13 31543082 31543082 A G TEX26 Missense_Mutation p.Y236C 0.56 deleterious(0) probably_damaging(1) TCGA-66-2794-01 13 41507906 41507906 C A ELF1 Missense_Mutation p.Q505H 0.57 tolerated(0.23) benign(0.016) TCGA-66-2794-01 13 52035399 52035399 C T RPS4XP16 RNA 0.21 TCGA-66-2794-01 13 61988090 61988090 G C PCDH20 Missense_Mutation p.L48V 0.22 tolerated(0.24) benign(0.232) TCGA-66-2794-01 15 102346255 102346255 G C OR4F6 Missense_Mutation p.E111D 0.04 deleterious_low_confidence(0.01) benign(0.162) TCGA-66-2794-01 15 25222054 25222054 G A SNRPN Missense_Mutation p.A100T 0.32 tolerated(0.07) benign(0.41) TCGA-66-2794-01 15 41817271 41817271 C T RPAP1 Missense_Mutation p.E665K 0.44 tolerated(0.2) benign(0.007) TCGA-66-2794-01 15 74365125 74365125 G A GOLGA6A Nonsense_Mutation p.Q487* 0.16 TCGA-66-2794-01 15 85619972 85619972 G C PDE8A Missense_Mutation p.R167T 0.08 tolerated(0.2) benign(0.263) TCGA-66-2794-01 16 1470256 1470256 C A C16orf91 Intron 0.34 TCGA-66-2794-01 16 1510444 1510444 C T CLCN7 Missense_Mutation p.G190D 0.37 deleterious(0) possibly_damaging(0.888) TCGA-66-2794-01 16 2153650 2153650 C A PKD1 Missense_Mutation p.G2803V 0.29 possibly_damaging(0.459) TCGA-66-2794-01 16 24895442 24895442 G C SLC5A11 Missense_Mutation p.L218F 0.28 deleterious(0) probably_damaging(1) TCGA-66-2794-01 16 28493970 28493970 G A CLN3 Missense_Mutation p.R272W 0.35 deleterious(0.01) possibly_damaging(0.773) TCGA-66-2794-01 16 30748643 30748643 C T SRCAP Missense_Mutation p.R2428C 0.21 unknown(0) TCGA-66-2794-01 16 31089490 31089490 G A ZNF646 Silent p.R615R 0.35 TCGA-66-2794-01 16 55516925 55516925 A C MMP2 Silent p.T86T 0.26 TCGA-66-2794-01 16 57787893 57787893 C A KATNB1 Missense_Mutation p.A405E 0.35 tolerated(0.06) probably_damaging(0.996) TCGA-66-2794-01 16 70208290 70208290 G A CLEC18C Missense_Mutation p.A37T 0.32 tolerated(0.26) benign(0.009) TCGA-66-2794-01 16 75512862 75512862 C T CHST6 Missense_Mutation p.A289T 0.31 tolerated(0.24) benign(0.017) TCGA-66-2794-01 16 9892311 9892311 C T GRIN2A Missense_Mutation p.A727T 0.27 deleterious(0.01) probably_damaging(0.978) TCGA-66-2794-01 17 29192760 29192760 C T ATAD5 Nonsense_Mutation p.Q1059* 0.12 TCGA-66-2794-01 17 29192766 29192766 C T ATAD5 Nonsense_Mutation p.Q1061* 0.12 TCGA-66-2794-01 17 29192774 29192774 C T ATAD5 Silent p.A1063A 0.10 TCGA-66-2794-01 17 45913745 45913745 C A LRRC46 Missense_Mutation p.Q167K 0.35 tolerated(0.08) benign(0.031) TCGA-66-2794-01 17 55693391 55693391 G A MSI2 Missense_Mutation p.A200T 0.24 tolerated(0.12) benign(0.01) TCGA-66-2794-01 17 57816265 57816265 C G VMP1 Missense_Mutation p.S124C 0.31 deleterious(0) probably_damaging(1) TCGA-66-2794-01 17 58233923 58233923 C G CA4 Missense_Mutation p.P39A 0.26 deleterious(0) probably_damaging(0.992) TCGA-66-2794-01 17 60865910 60865910 G C MARCH10 Silent p.R47R 0.33 TCGA-66-2794-01 17 7365286 7365286 C T ZBTB4 Silent p.E1005E 0.04 TCGA-66-2794-01 17 7468310 7468310 C G SENP3 Missense_Mutation p.S330R 0.26 deleterious(0.01) probably_damaging(0.991) TCGA-66-2794-01 17 7577105 7577105 G C TP53 Missense_Mutation p.P278R 0.63 deleterious(0) probably_damaging(1) TCGA-66-2794-01 17 80887328 80887328 C T TBCD Silent p.H981H 0.21 TCGA-66-2794-01 17 8926324 8926324 C T NTN1 Missense_Mutation p.P212S 0.19 tolerated(0.05) probably_damaging(0.967) TCGA-66-2794-01 18 14479164 14479164 C - CXADRP3 RNA 0.27 TCGA-66-2794-01 18 43219741 43219741 C G SLC14A2 Missense_Mutation p.Q292E 0.42 deleterious(0) possibly_damaging(0.533) TCGA-66-2794-01 18 45371772 45371772 G C SMAD2 Missense_Mutation p.Q407E 0.25 tolerated(0.86) benign(0.213) TCGA-66-2794-01 18 48703446 48703446 C T MEX3C Missense_Mutation p.G419S 0.20 tolerated(0.35) benign(0.082) TCGA-66-2794-01 19 18497103 18497103 C T GDF15 Missense_Mutation p.A35V 0.24 tolerated(0.1) benign(0.025) TCGA-66-2794-01 19 22575055 22575055 C A ZNF98 Missense_Mutation p.G328C 0.13 deleterious(0) probably_damaging(1) TCGA-66-2794-01 19 45017314 45017314 G A CEACAM20 RNA 0.32 TCGA-66-2794-01 19 49507558 49507558 C T RUVBL2 Silent p.L50L 0.06 TCGA-66-2794-01 19 52659421 52659421 T A ZNF836 Missense_Mutation p.K505N 0.09 deleterious(0.01) probably_damaging(0.993) TCGA-66-2794-01 1 110775600 110775600 C T KCNC4 3'UTR 0.41 TCGA-66-2794-01 1 11595162 11595162 C G PTCHD2 Silent p.P1210P 0.31 TCGA-66-2794-01 1 1222541 1222541 C T SCNN1D Missense_Mutation p.A391V 0.05 tolerated(0.49) benign(0.007) TCGA-66-2794-01 1 13668939 13668939 G T PRAMEF14 Missense_Mutation p.P464Q 0.39 tolerated(0.16) probably_damaging(0.938) TCGA-66-2794-01 1 176564599 176564599 C T PAPPA2 Missense_Mutation p.S620F 0.26 deleterious(0.03) probably_damaging(0.914) TCGA-66-2794-01 1 193091229 193091229 G C CDC73 5'UTR 0.35 TCGA-66-2794-01 1 203188832 203188832 C A CHIT1 Missense_Mutation p.G292V 0.24 deleterious(0) probably_damaging(0.999) TCGA-66-2794-01 1 207643442 207643443 AA - CR2 Frame_Shift_Del p.K408Gfs*7 0.17 TCGA-66-2794-01 1 213181649 213181649 T C ANGEL2 Missense_Mutation p.D182G 0.30 tolerated(0.06) probably_damaging(0.986) TCGA-66-2794-01 1 222867551 222867551 C A AIDA Splice_Site p.X78_splice 0.58 TCGA-66-2794-01 1 223566951 223566951 G T C1orf65 Missense_Mutation p.R45L 0.17 tolerated(0.26) benign(0.017) TCGA-66-2794-01 1 230903311 230903311 G A CAPN9 Silent p.L187L 0.26 TCGA-66-2794-01 1 234742956 234742956 C A IRF2BP2 Missense_Mutation p.W564L 0.59 deleterious(0) possibly_damaging(0.901) TCGA-66-2794-01 1 236849959 236849959 G A ACTN2 5'UTR 0.31 TCGA-66-2794-01 1 75039113 75039113 G T C1orf173 Missense_Mutation p.Q761K 0.34 deleterious(0.02) benign(0.225) TCGA-66-2794-01 20 33703374 33703374 T A EDEM2 Silent p.T533T 0.32 TCGA-66-2794-01 20 35443531 35443531 G A SOGA1 Nonsense_Mutation p.Q772* 0.28 TCGA-66-2794-01 20 35443741 35443741 C T SOGA1 Missense_Mutation p.E702K 0.30 tolerated(0.07) possibly_damaging(0.819) TCGA-66-2794-01 20 35444170 35444170 C T SOGA1 Missense_Mutation p.E559K 0.50 tolerated(0.09) possibly_damaging(0.839) TCGA-66-2794-01 20 3677923 3677923 T A SIGLEC1 Missense_Mutation p.N730I 0.31 tolerated(0.43) benign(0.016) TCGA-66-2794-01 20 36845707 36845707 C T KIAA1755 Missense_Mutation p.R950Q 0.45 deleterious(0) probably_damaging(0.999) TCGA-66-2794-01 20 37535686 37535686 A G PPP1R16B Missense_Mutation p.E296G 0.25 deleterious(0) possibly_damaging(0.589) TCGA-66-2794-01 20 3804819 3804819 C G AP5S1 Missense_Mutation p.L160V 0.44 tolerated(0.1) benign(0.168) TCGA-66-2794-01 20 55108599 55108599 G T FAM209B Missense_Mutation p.V68L 0.25 tolerated(0.45) probably_damaging(0.971) TCGA-66-2794-01 22 50845250 50845251 CG GCT PPP6R2 Frame_Shift_Ins p.A121Lfs*68 0.11 TCGA-66-2794-01 2 108608587 108608587 C T SLC5A7 Silent p.I68I 0.21 TCGA-66-2794-01 2 137814256 137814256 C T THSD7B Missense_Mutation p.H136Y 0.25 deleterious(0) benign(0.402) TCGA-66-2794-01 2 138000107 138000107 G T THSD7B Missense_Mutation p.S744I 0.35 deleterious(0) possibly_damaging(0.607) TCGA-66-2794-01 2 179201135 179201135 G T OSBPL6 Silent p.S255S 0.30 TCGA-66-2794-01 2 179736975 179736975 T C CCDC141 Missense_Mutation p.N655S 0.23 tolerated(0.27) benign(0.005) TCGA-66-2794-01 2 209358341 209358341 C A PTH2R Missense_Mutation p.P537Q 0.23 tolerated(0.55) benign(0.032) TCGA-66-2794-01 2 21237993 21237993 G A APOB Silent p.V1216V 0.26 TCGA-66-2794-01 2 216296577 216296577 C G FN1 Missense_Mutation p.E176Q 0.03 deleterious(0) probably_damaging(0.999) TCGA-66-2794-01 2 234975204 234975204 C G SPP2 Missense_Mutation p.H158D 0.17 tolerated(0.2) benign(0.049) TCGA-66-2794-01 2 240055998 240055998 G C HDAC4 Missense_Mutation p.L413V 0.27 tolerated(0.09) probably_damaging(0.997) TCGA-66-2794-01 2 28771759 28771759 G C PLB1 Missense_Mutation p.L323F 0.06 tolerated(1) benign(0.001) TCGA-66-2794-01 2 50724591 50724591 G T NRXN1 Missense_Mutation p.T960N 0.16 deleterious(0) possibly_damaging(0.73) TCGA-66-2794-01 2 61510333 61510333 C G USP34 Missense_Mutation p.D1649H 0.10 tolerated(0.13) benign(0.037) TCGA-66-2794-01 2 71160349 71160349 G A VAX2 3'UTR 0.30 TCGA-66-2794-01 2 73898243 73898243 G C ALMS1P RNA 0.27 TCGA-66-2794-01 2 87214094 87214094 A T RGPD1 Nonsense_Mutation p.R1350* 0.28 TCGA-66-2794-01 3 113737550 113737550 C G KIAA1407 Missense_Mutation p.E380Q 0.29 tolerated(0.06) benign(0.329) TCGA-66-2794-01 3 121356041 121356041 G C HCLS1 Missense_Mutation p.L173V 0.27 tolerated(1) unknown(0) TCGA-66-2794-01 3 152553885 152553885 C T P2RY1 Missense_Mutation p.P105L 0.33 deleterious(0) probably_damaging(0.999) TCGA-66-2794-01 3 155200013 155200013 C T PLCH1 Missense_Mutation p.E1276K 0.28 deleterious_low_confidence(0.02) benign(0.021) TCGA-66-2794-01 3 160219815 160219815 T C KPNA4 3'UTR 0.56 TCGA-66-2794-01 3 183226065 183226065 C T KLHL6 Missense_Mutation p.E231K 0.03 tolerated(0.9) benign(0.381) TCGA-66-2794-01 3 186943271 186943271 C T MASP1 Missense_Mutation p.E528K 0.09 tolerated(0.87) benign(0.004) TCGA-66-2794-01 3 196386691 196386691 C A NRROS Silent p.A59A 0.13 TCGA-66-2794-01 3 196771488 196771488 G C DLG1 3'UTR 0.12 TCGA-66-2794-01 3 197640812 197640812 C G IQCG Missense_Mutation p.Q276H 0.11 deleterious(0.03) probably_damaging(0.984) TCGA-66-2794-01 3 41266698 41266698 G T CTNNB1 Missense_Mutation p.Q165H 0.34 deleterious(0.04) benign(0.012) TCGA-66-2794-01 3 49690377 49690377 C A BSN Missense_Mutation p.P1130T 0.29 unknown(0) TCGA-66-2794-01 3 50402576 50402576 G C CACNA2D2 Silent p.L1053L 0.32 TCGA-66-2794-01 3 62518672 62518672 C A CADPS Missense_Mutation p.R722L 0.24 deleterious(0) benign(0.25) TCGA-66-2794-01 3 72891517 72891517 C T SHQ1 Missense_Mutation p.G82D 0.29 deleterious(0) probably_damaging(0.998) TCGA-66-2794-01 3 73433433 73433433 C A PDZRN3 Nonsense_Mutation p.E762* 0.27 TCGA-66-2794-01 3 87027889 87027889 C G VGLL3 Missense_Mutation p.E64Q 0.29 tolerated(0.46) probably_damaging(0.99) TCGA-66-2794-01 4 100503137 100503137 G A MTTP Missense_Mutation p.R46Q 0.23 tolerated(0.3) benign(0.009) TCGA-66-2794-01 4 123350789 123350789 T A ADAD1 Silent p.S542S 0.30 TCGA-66-2794-01 4 128689967 128689967 G C SLC25A31 Missense_Mutation p.V232L 0.35 deleterious(0) probably_damaging(0.992) TCGA-66-2794-01 4 187004154 187004154 G T TLR3 Silent p.L438L 0.33 TCGA-66-2794-01 4 56830468 56830468 G T CEP135 Missense_Mutation p.R243L 0.25 deleterious(0) probably_damaging(1) TCGA-66-2794-01 4 71554761 71554761 G A UTP3 Missense_Mutation p.V123M 0.30 tolerated(0.23) benign(0.27) TCGA-66-2794-01 4 80247029 80247029 C G NAA11 Translation_Start_Site p.M1? 0.24 tolerated(0.14) benign(0.145) TCGA-66-2794-01 4 80328678 80328678 G A GK2 Missense_Mutation p.P226L 0.31 deleterious(0) probably_damaging(0.999) TCGA-66-2794-01 5 11732354 11732354 G A CTNND2 Missense_Mutation p.S23L 0.15 tolerated(0.41) benign(0.002) TCGA-66-2794-01 5 140503878 140503878 G A PCDHB4 Silent p.L766L 0.42 TCGA-66-2794-01 5 140581134 140581134 C T PCDHB11 Missense_Mutation p.S596L 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.804) TCGA-66-2794-01 5 37299569 37299569 C T NUP155 Nonsense_Mutation p.W1221* 0.38 TCGA-66-2794-01 5 40716430 40716430 T C TTC33 Silent p.P202P 0.26 TCGA-66-2794-01 5 44815150 44815150 G A MRPS30 Missense_Mutation p.R389H 0.20 deleterious(0) probably_damaging(1) TCGA-66-2794-01 5 53839173 53839174 - T SNX18 Frame_Shift_Ins p.M596Ifs*27 0.19 TCGA-66-2794-01 6 112671180 112671180 C G RFPL4B Silent p.L90L 0.28 TCGA-66-2794-01 6 129419420 129419420 C T LAMA2 Nonsense_Mutation p.Q167* 0.27 TCGA-66-2794-01 6 134495894 134495894 T A SGK1 Intron 0.24 TCGA-66-2794-01 6 135287503 135287503 G A HBS1L Silent p.Y669Y 0.31 TCGA-66-2794-01 6 136597388 136597388 A T BCLAF1 Silent p.T425T 0.16 TCGA-66-2794-01 6 143074139 143074139 G A HIVEP2 3'UTR 0.21 TCGA-66-2794-01 6 147706040 147706040 A G STXBP5 3'Flank 0.31 TCGA-66-2794-01 6 152472735 152472735 C T SYNE1 Missense_Mutation p.E8135K 0.17 possibly_damaging(0.863) TCGA-66-2794-01 6 155635542 155635542 G C TFB1M Silent p.L7L 0.24 TCGA-66-2794-01 6 32154671 32154671 G A PBX2 Silent p.G344G 0.52 TCGA-66-2794-01 6 46133223 46133223 C T ENPP5 Missense_Mutation p.E303K 0.38 tolerated(0.16) benign(0.328) TCGA-66-2794-01 6 52052553 52052553 C G IL17A Silent p.P60P 0.31 TCGA-66-2794-01 6 99282855 99282855 G C POU3F2 Missense_Mutation p.E36Q 0.26 tolerated(0.06) benign(0.17) TCGA-66-2794-01 7 104782853 104782853 G A SRPK2 Missense_Mutation p.A382V 0.22 tolerated(0.49) benign(0.004) TCGA-66-2794-01 7 131853302 131853302 C A PLXNA4 Missense_Mutation p.E1349D 0.45 deleterious(0.04) probably_damaging(0.997) TCGA-66-2794-01 7 135080421 135080421 G A CNOT4 Missense_Mutation p.P365L 0.47 tolerated(0.14) benign(0.229) TCGA-66-2794-01 7 138593849 138593849 G A KIAA1549 Missense_Mutation p.P1055L 0.57 tolerated(0.2) possibly_damaging(0.879) TCGA-66-2794-01 7 146829535 146829535 G A CNTNAP2 Missense_Mutation p.E428K 0.19 tolerated(0.05) benign(0.015) TCGA-66-2794-01 7 148463729 148463729 G A CUL1 Missense_Mutation p.R289K 0.49 tolerated(1) benign(0.006) TCGA-66-2794-01 7 1487280 1487280 T C MICALL2 Silent p.L152L 0.47 TCGA-66-2794-01 7 149416651 149416651 C G KRBA1 5'UTR 0.15 TCGA-66-2794-01 7 150813909 150813909 C T AGAP3 Silent p.L121L 0.41 TCGA-66-2794-01 7 157013451 157013451 G T UBE3C Silent p.P661P 0.46 TCGA-66-2794-01 7 33195308 33195308 G T BBS9 Missense_Mutation p.V108F 0.22 deleterious(0) benign(0.041) TCGA-66-2794-01 7 6189578 6189578 G A USP42 Missense_Mutation p.R584H 0.32 tolerated(0.08) benign(0.009) TCGA-66-2794-01 7 65557572 65557572 C A ASL Missense_Mutation p.S391Y 0.29 deleterious(0) probably_damaging(0.961) TCGA-66-2794-01 7 77885613 77885613 G A MAGI2 Missense_Mutation p.P565L 0.39 deleterious(0.03) benign(0.413) TCGA-66-2794-01 7 80290394 80290394 C A CD36 Silent p.A99A 0.39 TCGA-66-2794-01 8 105257246 105257246 C G RIMS2 Missense_Mutation p.S1146C 0.55 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-66-2794-01 8 110476933 110476933 G T PKHD1L1 Missense_Mutation p.M2624I 0.45 tolerated(0.29) benign(0) TCGA-66-2794-01 8 144522215 144522215 G A ZC3H3 Silent p.D937D 0.44 TCGA-66-2794-01 8 144943414 144943414 G C EPPK1 Silent p.L1336L 0.18 TCGA-66-2794-01 8 144944503 144944503 G C EPPK1 Missense_Mutation p.I973M 0.29 benign(0.109) TCGA-66-2794-01 8 145663860 145663860 C T TONSL Silent p.V549V 0.20 TCGA-66-2794-01 8 1497519 1497519 C A DLGAP2 Missense_Mutation p.D220E 0.58 deleterious(0) benign(0.266) TCGA-66-2794-01 8 2910062 2910062 C G CSMD1 Missense_Mutation p.E2528Q 0.29 benign(0.007) TCGA-66-2794-01 8 43147713 43147713 G A POTEA RNA 0.55 TCGA-66-2794-01 8 67748305 67748305 G T SGK3 Missense_Mutation p.G246V 0.51 deleterious(0) probably_damaging(0.993) TCGA-66-2794-01 8 72936124 72936124 C G TRPA1 Missense_Mutation p.C1025S 0.17 tolerated(0.76) benign(0.003) TCGA-66-2794-01 8 72987580 72987580 T C TRPA1 Missense_Mutation p.Y22C 0.19 tolerated(0.11) benign(0.041) TCGA-66-2794-01 8 74585361 74585361 G A STAU2 Missense_Mutation p.R131W 0.15 deleterious(0) probably_damaging(1) TCGA-66-2794-01 8 90936800 90936800 G A OSGIN2 Missense_Mutation p.M230I 0.40 deleterious(0.03) possibly_damaging(0.905) TCGA-66-2794-01 8 97321829 97321829 G C PTDSS1 Missense_Mutation p.G351A 0.16 deleterious(0) probably_damaging(1) TCGA-66-2794-01 9 117113193 117113193 G A AKNA Missense_Mutation p.P1056L 0.60 deleterious(0) possibly_damaging(0.743) TCGA-66-2794-01 9 130931780 130931780 G A CIZ1 Nonsense_Mutation p.R684* 0.66 TCGA-66-2794-01 9 136208458 136208458 G A MED22 Missense_Mutation p.S167L 0.25 deleterious_low_confidence(0.01) benign(0.015) TCGA-66-2794-01 9 140076197 140076197 C T ANAPC2 Silent p.Q468Q 0.70 TCGA-66-2794-01 9 140396107 140396107 C T PNPLA7 Missense_Mutation p.D516N 0.21 deleterious(0.03) probably_damaging(0.986) TCGA-66-2794-01 9 4585677 4585677 G A SLC1A1 3'UTR 0.13 TCGA-66-2794-01 9 712577 712577 G A KANK1 Missense_Mutation p.S604N 0.17 deleterious(0.03) possibly_damaging(0.638) TCGA-66-2794-01 X 117960244 117960244 G T ZCCHC12 Missense_Mutation p.R346L 0.64 tolerated(0.62) benign(0.18) TCGA-66-2794-01 X 118603702 118603702 G T SLC25A5 Nonsense_Mutation p.E64* 0.58 TCGA-66-2794-01 X 12904872 12904872 C A TLR7 Missense_Mutation p.S415R 0.47 tolerated(0.12) benign(0.021) TCGA-66-2794-01 X 30268617 30268617 C T MAGEB1 Missense_Mutation p.R3W 0.76 deleterious(0.02) probably_damaging(1) TCGA-66-2795-01 10 101604082 101604082 C A ABCC2 Missense_Mutation p.P1283T 0.32 deleterious(0) benign(0.272) TCGA-66-2795-01 10 101636838 101636838 C T DNMBP 3'UTR 0.25 TCGA-66-2795-01 10 102054794 102054794 G T PKD2L1 Silent p.A481A 0.27 TCGA-66-2795-01 10 104638234 104638234 A T AS3MT Missense_Mutation p.T237S 0.24 tolerated(0.16) benign(0.035) TCGA-66-2795-01 10 115804389 115804389 C A ADRB1 Nonsense_Mutation p.Y166* 0.29 TCGA-66-2795-01 10 118363606 118363606 T A PNLIPRP1 Silent p.A376A 0.24 TCGA-66-2795-01 10 118957018 118957018 C G KCNK18 Missense_Mutation p.P7A 0.30 tolerated(0.06) benign(0.105) TCGA-66-2795-01 10 124594350 124594350 C T CUZD1 Silent p.L418L 0.28 TCGA-66-2795-01 10 129902137 129902137 G T MKI67 Missense_Mutation p.P2656Q 0.26 tolerated(0.14) probably_damaging(0.973) TCGA-66-2795-01 10 25885705 25885705 C A GPR158 Missense_Mutation p.P711Q 0.41 deleterious(0) probably_damaging(0.994) TCGA-66-2795-01 10 28228919 28228919 T A ARMC4 Silent p.A668A 0.35 TCGA-66-2795-01 10 38344482 38344482 C A ZNF33A Missense_Mutation p.S477Y 0.40 deleterious(0.01) benign(0.387) TCGA-66-2795-01 10 38344544 38344544 G A ZNF33A Missense_Mutation p.E498K 0.16 tolerated(0.18) benign(0.007) TCGA-66-2795-01 10 38406785 38406785 A T ZNF37A Missense_Mutation p.T236S 0.38 tolerated(0.56) benign(0) TCGA-66-2795-01 10 45480357 45480357 G A RASSF4 Missense_Mutation p.G157D 0.26 tolerated(0.43) possibly_damaging(0.728) TCGA-66-2795-01 10 49203511 49203511 G T FAM25C Nonsense_Mutation p.S57* 0.35 TCGA-66-2795-01 10 59986886 59986886 G A IPMK Silent p.D97D 0.27 TCGA-66-2795-01 10 75276843 75276843 C A USP54 Missense_Mutation p.S1114I 0.39 tolerated_low_confidence(0.09) possibly_damaging(0.748) TCGA-66-2795-01 11 114577506 114577506 C A NXPE2 Missense_Mutation p.L512I 0.25 deleterious(0.01) possibly_damaging(0.616) TCGA-66-2795-01 11 12316029 12316029 C T MICALCL Missense_Mutation p.R351W 0.31 deleterious(0) probably_damaging(0.981) TCGA-66-2795-01 11 123810587 123810587 C T OR4D5 Silent p.G88G 0.36 TCGA-66-2795-01 11 123894342 123894342 G T OR10G9 Missense_Mutation p.G208V 0.31 tolerated(0.22) benign(0.362) TCGA-66-2795-01 11 123900599 123900599 T C OR10G8 Silent p.A90A 0.26 TCGA-66-2795-01 11 124766101 124766101 G A ROBO4 Silent p.S224S 0.30 TCGA-66-2795-01 11 218844 218844 C A SIRT3 Silent p.R389R 0.25 TCGA-66-2795-01 11 26574888 26574888 C A ANO3 Missense_Mutation p.A461D 0.36 deleterious(0) probably_damaging(1) TCGA-66-2795-01 11 292014 292014 A G ATHL1 Silent p.P315P 0.29 TCGA-66-2795-01 11 45889225 45889225 A T CRY2 Silent p.T289T 0.30 TCGA-66-2795-01 11 47712000 47712000 C A AGBL2 Missense_Mutation p.C420F 0.34 deleterious(0) probably_damaging(1) TCGA-66-2795-01 11 4790944 4790944 T C OR51F1 Silent p.L68L 0.30 TCGA-66-2795-01 11 4870257 4870257 G A OR51S1 Missense_Mutation p.P61L 0.39 deleterious(0.03) benign(0.285) TCGA-66-2795-01 11 50003265 50003265 C G OR4C12 Missense_Mutation p.R258P 0.14 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-66-2795-01 11 55038022 55038022 A G TRIM48 3'UTR 0.50 TCGA-66-2795-01 11 56113634 56113634 A T OR8K1 Silent p.I40I 0.29 TCGA-66-2795-01 11 61624947 61624947 C G FADS2 Missense_Mutation p.P276R 0.19 deleterious(0.01) probably_damaging(0.979) TCGA-66-2795-01 11 67168617 67168617 C A PPP1CA Missense_Mutation p.G48C 0.46 tolerated_low_confidence(0.12) possibly_damaging(0.871) TCGA-66-2795-01 11 68552317 68552317 C A CPT1A Nonsense_Mutation p.E377* 0.22 TCGA-66-2795-01 11 7818157 7818157 C A OR5P2 Silent p.L111L 0.29 TCGA-66-2795-01 11 83182671 83182671 G C DLG2 Missense_Mutation p.P815R 0.29 deleterious(0) probably_damaging(1) TCGA-66-2795-01 11 83673930 83673930 G A DLG2 Silent p.T446T 0.28 TCGA-66-2795-01 11 93800724 93800724 T A HEPHL1 Missense_Mutation p.S291T 0.34 tolerated(0.14) probably_damaging(0.983) TCGA-66-2795-01 12 112602052 112602052 G T HECTD4 Missense_Mutation p.L4042M 0.09 probably_damaging(0.988) TCGA-66-2795-01 12 42863376 42863376 T A PRICKLE1 Missense_Mutation p.Q87L 0.34 deleterious(0) benign(0.375) TCGA-66-2795-01 12 4705872 4705872 C A DYRK4 Missense_Mutation p.F179L 0.25 tolerated(1) benign(0.002) TCGA-66-2795-01 12 4735746 4735746 T A AKAP3 Missense_Mutation p.Q774H 0.27 deleterious(0) probably_damaging(0.963) TCGA-66-2795-01 12 48921715 48921715 C G OR8S1 Missense_Mutation p.D303E 0.24 tolerated(0.31) benign(0.028) TCGA-66-2795-01 12 55863538 55863538 G T OR6C70 Missense_Mutation p.R129S 0.35 deleterious_low_confidence(0) benign(0.038) TCGA-66-2795-01 12 56568479 56568479 G A SMARCC2 Silent p.T484T 0.35 TCGA-66-2795-01 12 75444506 75444506 C A KCNC2 Missense_Mutation p.G427W 0.31 deleterious(0) probably_damaging(1) TCGA-66-2795-01 12 85459090 85459090 G - LRRIQ1 Frame_Shift_Del p.A815Qfs*16 0.21 TCGA-66-2795-01 12 95867941 95867941 G T METAP2 5'UTR 0.46 TCGA-66-2795-01 13 108922219 108922219 C T TNFSF13B 5'UTR 0.22 TCGA-66-2795-01 13 109459146 109459146 T C MYO16 Silent p.Y265Y 0.29 TCGA-66-2795-01 13 110819570 110819570 C T COL4A1 Missense_Mutation p.G1295D 0.28 benign(0.253) TCGA-66-2795-01 13 111077142 111077142 C A COL4A2 Missense_Mutation p.P81Q 0.40 probably_damaging(0.947) TCGA-66-2795-01 13 114290914 114290914 G A TFDP1 Missense_Mutation p.R302Q 0.19 tolerated(0.1) benign(0.021) TCGA-66-2795-01 13 70681669 70681669 G C KLHL1 Missense_Mutation p.R55G 0.19 tolerated_low_confidence(0.15) benign(0.427) TCGA-66-2795-01 13 88330288 88330288 G T SLITRK5 Missense_Mutation p.C882F 0.20 tolerated(0.13) possibly_damaging(0.51) TCGA-66-2795-01 14 103416919 103416919 C A CDC42BPB Missense_Mutation p.V1065L 0.50 deleterious(0.02) possibly_damaging(0.547) TCGA-66-2795-01 14 20295919 20295919 G C OR4N2 Missense_Mutation p.L104F 0.16 tolerated(0.53) probably_damaging(0.964) TCGA-66-2795-01 14 20389170 20389170 C A OR4K5 Silent p.I135I 0.17 TCGA-66-2795-01 14 23512367 23512367 G T PSMB11 3'UTR 0.43 TCGA-66-2795-01 14 37717084 37717084 A T MIPOL1 5'UTR 0.22 TCGA-66-2795-01 14 44975852 44975852 C A FSCB Missense_Mutation p.Q113H 0.36 tolerated(0.36) benign(0.084) TCGA-66-2795-01 14 88477826 88477826 A T GPR65 Missense_Mutation p.H212L 0.42 tolerated(0.71) benign(0.006) TCGA-66-2795-01 14 95085702 95085702 G A SERPINA3 Missense_Mutation p.A272T 0.41 tolerated(0.06) benign(0.439) TCGA-66-2795-01 15 22383439 22383439 G C OR4N4 3'UTR 0.23 TCGA-66-2795-01 15 33023383 33023383 T A GREM1 Silent p.P164P 0.36 TCGA-66-2795-01 15 34109158 34109158 C T RYR3 Missense_Mutation p.A3533V 0.24 benign(0.283) TCGA-66-2795-01 15 40656136 40656136 C T DISP2 Missense_Mutation p.H144Y 0.26 deleterious(0.01) possibly_damaging(0.799) TCGA-66-2795-01 15 43024584 43024584 C T CDAN1 Missense_Mutation p.A494T 0.11 tolerated(0.17) probably_damaging(0.992) TCGA-66-2795-01 15 64791652 64791652 G A ZNF609 Missense_Mutation p.G12R 0.08 deleterious(0) probably_damaging(0.997) TCGA-66-2795-01 15 67457287 67457287 C A SMAD3 Silent p.I87I 0.35 TCGA-66-2795-01 15 72554003 72554003 A T PARP6 Missense_Mutation p.N147K 0.34 tolerated(0.09) benign(0.309) TCGA-66-2795-01 15 75651097 75651097 C T MAN2C1 Missense_Mutation p.V749I 0.26 tolerated(0.49) benign(0.108) TCGA-66-2795-01 15 75981901 75981901 C T CSPG4 Missense_Mutation p.R502H 0.23 tolerated(0.14) benign(0.009) TCGA-66-2795-01 15 76673733 76673733 G A SCAPER Silent p.L1231L 0.27 TCGA-66-2795-01 15 78894195 78894195 G T CHRNA3 Missense_Mutation p.F263L 0.37 deleterious(0) probably_damaging(0.999) TCGA-66-2795-01 15 81636343 81636343 G A TMC3 Missense_Mutation p.A521V 0.38 tolerated(0.36) possibly_damaging(0.792) TCGA-66-2795-01 16 27629747 27629747 G T KIAA0556 Missense_Mutation p.G22V 0.29 deleterious(0.03) possibly_damaging(0.902) TCGA-66-2795-01 16 3139319 3139319 G A ZSCAN10 Missense_Mutation p.R651W 0.33 tolerated(0.08) possibly_damaging(0.5) TCGA-66-2795-01 16 3828795 3828795 G C CREBBP Missense_Mutation p.P616R 0.28 probably_damaging(1) TCGA-66-2795-01 16 55539304 55539304 C G MMP2 Missense_Mutation p.L645V 0.30 tolerated(0.58) benign(0.057) TCGA-66-2795-01 16 55844887 55844887 C A CES1 Silent p.L374L 0.22 TCGA-66-2795-01 16 57465090 57465090 C T CIAPIN1 Missense_Mutation p.G240E 0.33 tolerated(0.39) benign(0.021) TCGA-66-2795-01 16 58327644 58327644 G A PRSS54 Missense_Mutation p.S26F 0.25 deleterious(0) possibly_damaging(0.867) TCGA-66-2795-01 16 633304 633304 C T PIGQ Silent p.G651G 0.36 TCGA-66-2795-01 16 67942823 67942824 - T PSKH1 Frame_Shift_Ins p.Y58Lfs*28 0.25 TCGA-66-2795-01 16 67942825 67942825 A T PSKH1 Missense_Mutation p.Y58F 0.29 tolerated_low_confidence(0.7) benign(0.01) TCGA-66-2795-01 16 84104333 84104333 C T MBTPS1 Missense_Mutation p.A548T 0.24 tolerated(0.28) benign(0.132) TCGA-66-2795-01 16 84270969 84270969 G T KCNG4 Nonsense_Mutation p.Y41* 0.32 TCGA-66-2795-01 16 9892214 9892214 G T GRIN2A Missense_Mutation p.T759N 0.26 deleterious(0.02) benign(0.119) TCGA-66-2795-01 17 10439902 10439902 T C MYH2 Missense_Mutation p.K640R 0.33 tolerated(0.06) benign(0.212) TCGA-66-2795-01 17 21147437 21147437 G A C17orf103 Silent p.I68I 0.29 TCGA-66-2795-01 17 21319497 21319497 C T KCNJ12 Silent p.F281F 0.23 TCGA-66-2795-01 17 26817737 26817737 G A SLC13A2 Missense_Mutation p.M178I 0.17 deleterious(0) probably_damaging(0.999) TCGA-66-2795-01 17 27009836 27009836 C T SUPT6H Silent p.P563P 0.18 TCGA-66-2795-01 17 30213082 30213082 T G UTP6 Splice_Site p.X208_splice 0.47 TCGA-66-2795-01 17 32598747 32598747 G A CCL7 Missense_Mutation p.A76T 0.19 deleterious(0.04) probably_damaging(0.951) TCGA-66-2795-01 17 37425100 37425100 C A FBXL20 Missense_Mutation p.D305Y 0.44 deleterious(0) probably_damaging(0.949) TCGA-66-2795-01 17 39034579 39034579 G T KRT20 Silent p.A319A 0.45 TCGA-66-2795-01 17 39340522 39340522 G T KRTAP4-1 3'UTR 0.21 TCGA-66-2795-01 17 39675042 39675044 AAG - KRT15 In_Frame_Del p.F13del 0.25 TCGA-66-2795-01 17 42744414 42744414 C T C17orf104 Nonsense_Mutation p.Q379* 0.49 TCGA-66-2795-01 17 43912064 43912064 C T CRHR1 Silent p.A423A 0.55 TCGA-66-2795-01 17 44101454 44101454 G A MAPT Missense_Mutation p.G750S 0.49 deleterious(0) probably_damaging(1) TCGA-66-2795-01 17 44101478 44101478 C - MAPT Frame_Shift_Del p.Q759Sfs*5 0.24 TCGA-66-2795-01 17 46703155 46703155 T G HOXB9 Missense_Mutation p.K159N 0.24 tolerated(0.5) benign(0.008) TCGA-66-2795-01 17 51900675 51900675 C A KIF2B Missense_Mutation p.P94H 0.33 deleterious(0) possibly_damaging(0.512) TCGA-66-2795-01 17 51901022 51901022 C G KIF2B Missense_Mutation p.Q210E 0.34 tolerated(1) benign(0) TCGA-66-2795-01 17 55184062 55184062 G T AKAP1 Missense_Mutation p.A413S 0.57 tolerated(0.75) benign(0.001) TCGA-66-2795-01 17 56084313 56084313 C A SRSF1 Missense_Mutation p.E62D 0.51 tolerated(0.13) benign(0.072) TCGA-66-2795-01 17 56634390 56634390 C A TEX14 Missense_Mutation p.Q1492H 0.50 deleterious(0) probably_damaging(0.928) TCGA-66-2795-01 17 60742095 60742095 A G MRC2 Missense_Mutation p.N102S 0.40 tolerated(0.16) benign(0.019) TCGA-66-2795-01 17 60821758 60821758 C A MARCH10 Missense_Mutation p.V172L 0.19 deleterious(0.01) benign(0.055) TCGA-66-2795-01 17 68171704 68171704 T C KCNJ2 Missense_Mutation p.I175T 0.46 deleterious(0) probably_damaging(0.911) TCGA-66-2795-01 17 71348719 71348719 G A SDK2 Missense_Mutation p.T1884M 0.13 deleterious(0.02) probably_damaging(1) TCGA-66-2795-01 17 72608775 72608775 T A CD300E 3'UTR 0.57 TCGA-66-2795-01 17 7358688 7358703 CTTCTCCAGGAAGTGG - CHRNB1 Frame_Shift_Del p.S378Gfs*74 0.46 TCGA-66-2795-01 17 74307530 74307530 G A PRPSAP1 3'UTR 0.47 TCGA-66-2795-01 17 7578457 7578457 C A TP53 Missense_Mutation p.R158L 0.36 deleterious(0) probably_damaging(0.986) TCGA-66-2795-01 17 9828857 9828857 C T GAS7 Silent p.E358E 0.56 TCGA-66-2795-01 18 2707859 2707859 C T SMCHD1 Missense_Mutation p.P734L 0.35 deleterious(0.01) probably_damaging(0.988) TCGA-66-2795-01 18 44560934 44560934 T A TCEB3B Missense_Mutation p.K234N 0.50 deleterious(0.01) benign(0.003) TCGA-66-2795-01 18 52586518 52586518 C T CCDC68 Missense_Mutation p.R258H 0.29 tolerated(0.23) benign(0.037) TCGA-66-2795-01 19 14740934 14740934 G - EMR3 Frame_Shift_Del p.Q577Rfs*41 0.24 TCGA-66-2795-01 19 16612105 16612105 G A C19orf44 Missense_Mutation p.A168T 0.17 tolerated(0.06) benign(0.043) TCGA-66-2795-01 19 18368721 18368721 G A KIAA1683 Missense_Mutation p.R1125C 0.30 deleterious(0) probably_damaging(1) TCGA-66-2795-01 19 22940719 22940719 A T ZNF99 Silent p.L664L 0.23 TCGA-66-2795-01 19 23543751 23543751 T A ZNF91 Missense_Mutation p.K677M 0.13 deleterious(0.01) probably_damaging(0.992) TCGA-66-2795-01 19 23544675 23544675 T A ZNF91 Missense_Mutation p.K369M 0.27 deleterious(0.02) benign(0.112) TCGA-66-2795-01 19 39116734 39116734 G T EIF3K Missense_Mutation p.A116S 0.80 tolerated(0.73) benign(0.002) TCGA-66-2795-01 19 41383104 41383104 G T CYP2A7 Missense_Mutation p.F384L 0.20 tolerated(1) benign(0.001) TCGA-66-2795-01 19 51958690 51958690 G T SIGLEC8 Missense_Mutation p.L345M 0.48 tolerated(0.11) probably_damaging(0.993) TCGA-66-2795-01 19 52537242 52537242 T A ZNF432 Missense_Mutation p.T564S 0.62 deleterious(0.02) benign(0.094) TCGA-66-2795-01 19 53344201 53344201 T C ZNF468 Missense_Mutation p.Q449R 0.44 tolerated(0.4) benign(0) TCGA-66-2795-01 19 55143986 55143986 C A LILRB1 Missense_Mutation p.Q245K 0.39 deleterious(0.02) benign(0.305) TCGA-66-2795-01 19 59082715 59082716 - G MZF1 Frame_Shift_Ins p.E15Rfs*3 0.12 TCGA-66-2795-01 19 9063042 9063042 G T MUC16 Missense_Mutation p.A8135D 0.40 unknown(0) TCGA-66-2795-01 19 9063975 9063975 T C MUC16 Missense_Mutation p.E7824G 0.41 unknown(0) TCGA-66-2795-01 19 9578544 9578544 G T ZNF560 Missense_Mutation p.P360H 0.37 deleterious(0.05) benign(0.098) TCGA-66-2795-01 1 104116374 104116374 G T AMY2B Missense_Mutation p.E186D 0.45 tolerated(0.09) benign(0.001) TCGA-66-2795-01 1 112525141 112525141 C A KCND3 Nonsense_Mutation p.E70* 0.36 TCGA-66-2795-01 1 144882681 144882681 T A PDE4DIP Missense_Mutation p.H1113L 0.20 tolerated(0.5) benign(0.096) TCGA-66-2795-01 1 152128280 152128280 C T RPTN Missense_Mutation p.R432K 0.17 tolerated(0.09) benign(0.122) TCGA-66-2795-01 1 154321553 154321553 A T ATP8B2 Missense_Mutation p.S1211C 0.43 deleterious(0.01) unknown(0) TCGA-66-2795-01 1 156542282 156542282 C G IQGAP3 Intron 0.31 TCGA-66-2795-01 1 158450386 158450386 G C OR10R2 Missense_Mutation p.C240S 0.29 deleterious(0.02) benign(0.006) TCGA-66-2795-01 1 158622411 158622411 C T SPTA1 Missense_Mutation p.R1074H 0.45 deleterious(0) possibly_damaging(0.835) TCGA-66-2795-01 1 161559371 161559371 G T RP11-25K21.6 Intron 0.41 TCGA-66-2795-01 1 16257904 16257904 A T SPEN Silent p.S1723S 0.52 TCGA-66-2795-01 1 169563946 169563946 G A SELP Silent p.T757T 0.38 TCGA-66-2795-01 1 169698355 169698355 C T SELE Silent p.Q354Q 0.39 TCGA-66-2795-01 1 169762072 169762072 T C METTL18 Silent p.P255P 0.36 TCGA-66-2795-01 1 173806114 173806114 G T DARS2 Nonsense_Mutation p.G234* 0.06 TCGA-66-2795-01 1 176145128 176145128 A T RFWD2 Missense_Mutation p.H161Q 0.33 tolerated(0.35) benign(0.002) TCGA-66-2795-01 1 176992585 176992585 G T ASTN1 Silent p.R465R 0.61 TCGA-66-2795-01 1 179631354 179631354 C - TDRD5 Frame_Shift_Del p.H814Ifs*43 0.30 TCGA-66-2795-01 1 18808281 18808281 G A KLHDC7A Missense_Mutation p.R269Q 0.32 tolerated(0.95) benign(0.049) TCGA-66-2795-01 1 192153562 192153562 G T RGS18 Missense_Mutation p.D196Y 0.63 deleterious(0) probably_damaging(0.951) TCGA-66-2795-01 1 207039697 207039697 G A IL20 Silent p.L71L 0.66 TCGA-66-2795-01 1 220359061 220359061 C T RAB3GAP2 Missense_Mutation p.S601N 0.42 tolerated(1) benign(0.007) TCGA-66-2795-01 1 231396415 231396415 G A GNPAT Missense_Mutation p.E142K 0.25 deleterious(0.01) probably_damaging(0.952) TCGA-66-2795-01 1 233802474 233802474 G T KCNK1 Missense_Mutation p.R163S 0.45 deleterious(0.03) possibly_damaging(0.743) TCGA-66-2795-01 1 240977014 240977014 G A RGS7 Missense_Mutation p.T287M 0.25 tolerated(0.21) possibly_damaging(0.607) TCGA-66-2795-01 1 241753535 241753535 G T KMO Missense_Mutation p.E410D 0.16 tolerated(0.15) benign(0.029) TCGA-66-2795-01 1 241886728 241886728 C A WDR64 Missense_Mutation p.S385Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-66-2795-01 1 245287421 245287421 G C RP11-290P14.2 RNA 0.45 TCGA-66-2795-01 1 246890254 246890254 C T SCCPDH Missense_Mutation p.S84L 0.26 deleterious(0) probably_damaging(0.995) TCGA-66-2795-01 1 248309295 248309295 T C OR2M5 Silent p.T282T 0.49 TCGA-66-2795-01 1 248366447 248366447 C A OR2M3 Missense_Mutation p.F26L 0.38 tolerated(0.33) benign(0.224) TCGA-66-2795-01 1 2938247 2938247 G A ACTRT2 5'UTR 0.57 TCGA-66-2795-01 1 37337887 37337887 C G GRIK3 Missense_Mutation p.D212H 0.22 tolerated(0.07) benign(0.154) TCGA-66-2795-01 1 74507460 74507460 G T LRRIQ3 Silent p.I385I 0.50 TCGA-66-2795-01 1 78207351 78207351 A C USP33 Missense_Mutation p.L42W 0.48 deleterious(0) probably_damaging(1) TCGA-66-2795-01 1 91740343 91740343 A G HFM1 Silent p.S1204S 0.66 TCGA-66-2795-01 20 13539738 13539738 T C TASP1 Missense_Mutation p.R198G 0.27 deleterious(0.01) possibly_damaging(0.856) TCGA-66-2795-01 20 20505508 20505508 C T RALGAPA2 Missense_Mutation p.S1243N 0.36 tolerated(0.12) benign(0.027) TCGA-66-2795-01 20 30070289 30070289 A T REM1 Missense_Mutation p.E208V 0.35 deleterious(0) probably_damaging(0.979) TCGA-66-2795-01 20 33581207 33581207 C A MYH7B Missense_Mutation p.T835K 0.33 probably_damaging(0.998) TCGA-66-2795-01 20 3766901 3766901 A T CENPB Missense_Mutation p.L77H 0.46 deleterious(0) unknown(0) TCGA-66-2795-01 20 57829217 57829217 G T ZNF831 Missense_Mutation p.D1485Y 0.29 deleterious(0) possibly_damaging(0.831) TCGA-66-2795-01 20 5965433 5965433 G T MCM8 Silent p.G580G 0.23 TCGA-66-2795-01 20 62407098 62407098 G A ZBTB46 Silent p.A385A 0.26 TCGA-66-2795-01 21 10921987 10921987 C G TPTE Missense_Mutation p.G346R 0.11 deleterious(0) probably_damaging(0.994) TCGA-66-2795-01 21 11038928 11038928 T A BAGE2 RNA 0.06 TCGA-66-2795-01 21 22910217 22910217 C A NCAM2 Missense_Mutation p.T818N 0.24 deleterious(0.01) benign(0.006) TCGA-66-2795-01 21 43913095 43913095 A - RSPH1 Frame_Shift_Del p.F50Sfs*93 0.30 TCGA-66-2795-01 21 45815303 45815303 G C TRPM2 Missense_Mutation p.G601R 0.36 deleterious(0.05) benign(0.078) TCGA-66-2795-01 22 16279204 16279204 C A POTEH Missense_Mutation p.R340I 0.10 tolerated(0.07) benign(0.02) TCGA-66-2795-01 22 18020401 18020401 G A CECR2 Missense_Mutation p.R578Q 0.46 tolerated(0.21) benign(0.016) TCGA-66-2795-01 22 18022205 18022205 G A CECR2 Silent p.K770K 0.44 TCGA-66-2795-01 22 37334270 37334270 C T CSF2RB Missense_Mutation p.S807F 0.31 tolerated(0.06) probably_damaging(0.976) TCGA-66-2795-01 22 38878647 38878647 A T KDELR3 3'Flank 0.38 TCGA-66-2795-01 22 42609195 42609195 C T TCF20 Missense_Mutation p.R706H 0.35 probably_damaging(0.962) TCGA-66-2795-01 22 44514978 44514978 G T PARVB Nonsense_Mutation p.E145* 0.27 TCGA-66-2795-01 2 100079080 100079080 C T REV1 Missense_Mutation p.G20E 0.26 deleterious(0.04) benign(0.103) TCGA-66-2795-01 2 11802339 11802340 GG A NTSR2 Frame_Shift_Del p.L219Wfs*3 0.24 TCGA-66-2795-01 2 128387373 128387373 C A MYO7B Missense_Mutation p.T1567K 0.28 deleterious(0) possibly_damaging(0.478) TCGA-66-2795-01 2 136530083 136530083 G C UBXN4 Missense_Mutation p.E306Q 0.21 tolerated(0.09) benign(0.017) TCGA-66-2795-01 2 138208577 138208577 T A THSD7B Missense_Mutation p.L1041Q 0.43 deleterious(0) unknown(0) TCGA-66-2795-01 2 139429176 139429176 T A NXPH2 Missense_Mutation p.K37N 0.26 tolerated_low_confidence(0.34) benign(0.016) TCGA-66-2795-01 2 145161578 145161578 C A ZEB2 Nonsense_Mutation p.E238* 0.19 TCGA-66-2795-01 2 148602722 148602722 A G ACVR2A Translation_Start_Site p.M1? 0.26 deleterious_low_confidence(0) possibly_damaging(0.824) TCGA-66-2795-01 2 152580773 152580773 C A NEB Splice_Site p.X204_splice 0.26 TCGA-66-2795-01 2 163693137 163693137 C A KCNH7 Nonsense_Mutation p.E73* 0.36 TCGA-66-2795-01 2 1637965 1637965 C T PXDN 3'UTR 0.25 TCGA-66-2795-01 2 167297992 167297992 C G SCN7A Missense_Mutation p.E691Q 0.27 deleterious(0) probably_damaging(0.936) TCGA-66-2795-01 2 168115829 168115829 G T XIRP2 3'UTR 0.21 TCGA-66-2795-01 2 170411709 170411710 TT - FASTKD1 Frame_Shift_Del p.K380Dfs*20 0.30 TCGA-66-2795-01 2 175265857 175265857 A G SCRN3 Missense_Mutation p.R161G 0.29 deleterious(0) benign(0.444) TCGA-66-2795-01 2 178098944 178098944 C T NFE2L2 Missense_Mutation p.R34Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-66-2795-01 2 179582536 179582536 C T TTN Silent p.A8355A 0.19 TCGA-66-2795-01 2 179604759 179604759 G T TTN Silent p.R4401R 0.33 TCGA-66-2795-01 2 179718255 179718255 G T CCDC141 Missense_Mutation p.Q1053K 0.36 tolerated(1) benign(0.02) TCGA-66-2795-01 2 185798417 185798417 C G ZNF804A Missense_Mutation p.Q115E 0.31 deleterious(0) possibly_damaging(0.857) TCGA-66-2795-01 2 185800721 185800721 G T ZNF804A Missense_Mutation p.V200F 0.30 tolerated(0.34) benign(0.027) TCGA-66-2795-01 2 198950685 198950685 C T PLCL1 Missense_Mutation p.P815L 0.20 deleterious(0.02) benign(0.32) TCGA-66-2795-01 2 220045906 220045906 C T FAM134A Missense_Mutation p.H255Y 0.31 tolerated(0.11) possibly_damaging(0.882) TCGA-66-2795-01 2 227662338 227662338 G A IRS1 Missense_Mutation p.R373C 0.31 deleterious(0) probably_damaging(0.993) TCGA-66-2795-01 2 234863887 234863887 G T TRPM8 Missense_Mutation p.R452L 0.31 tolerated(0.18) benign(0.037) TCGA-66-2795-01 2 238250716 238250716 A G COL6A3 Missense_Mutation p.V2586A 0.31 unknown(0) TCGA-66-2795-01 2 24276774 24276774 A G FKBP1B Missense_Mutation p.R14G 0.17 tolerated(0.25) benign(0.006) TCGA-66-2795-01 2 26717816 26717816 G C OTOF Nonsense_Mutation p.Y297* 0.28 TCGA-66-2795-01 2 27800102 27800102 A G C2orf16 Silent p.L221L 0.21 TCGA-66-2795-01 2 31133823 31133823 C T GALNT14 Missense_Mutation p.V540I 0.16 tolerated(0.61) benign(0.008) TCGA-66-2795-01 2 32774511 32774511 C G BIRC6 Silent p.L4369L 0.19 TCGA-66-2795-01 2 43520275 43520275 C A THADA Missense_Mutation p.A1506S 0.24 tolerated(1) benign(0.001) TCGA-66-2795-01 2 48873715 48873715 G C STON1-GTF2A1L Missense_Mutation p.S875T 0.59 tolerated(0.27) benign(0.009) TCGA-66-2795-01 2 60687618 60687618 C A BCL11A Missense_Mutation p.S810I 0.79 deleterious(0) probably_damaging(0.985) TCGA-66-2795-01 2 61597467 61597467 C A USP34 Missense_Mutation p.A414S 0.09 tolerated(0.12) probably_damaging(0.956) TCGA-66-2795-01 2 74482935 74482935 A T SLC4A5 Missense_Mutation p.L331Q 0.32 deleterious(0) probably_damaging(0.979) TCGA-66-2795-01 2 90154142 90154142 G C IGKV3D-15 Missense_Mutation p.G77R 0.39 deleterious(0) probably_damaging(0.937) TCGA-66-2795-01 2 97217381 97217381 G A ARID5A Silent p.L372L 0.50 TCGA-66-2795-01 3 100523636 100523636 C A ABI3BP Missense_Mutation p.A583S 0.45 deleterious(0.02) possibly_damaging(0.739) TCGA-66-2795-01 3 108392923 108392923 A T DZIP3 Splice_Site p.X864_splice 0.20 TCGA-66-2795-01 3 133119010 133119010 G T BFSP2 Missense_Mutation p.R28M 0.20 tolerated(0.07) possibly_damaging(0.807) TCGA-66-2795-01 3 137880959 137880959 C A DBR1 Missense_Mutation p.R469S 0.32 tolerated(0.24) possibly_damaging(0.717) TCGA-66-2795-01 3 140122641 140122641 G T CLSTN2 Nonsense_Mutation p.E135* 0.22 TCGA-66-2795-01 3 148586807 148586807 C A CPA3 Missense_Mutation p.Q84K 0.50 tolerated(0.1) benign(0.069) TCGA-66-2795-01 3 151161171 151161171 G T IGSF10 Missense_Mutation p.T1855N 0.21 tolerated(0.32) benign(0.156) TCGA-66-2795-01 3 157841731 157841731 G C RSRC1 Missense_Mutation p.G91R 0.53 deleterious_low_confidence(0) unknown(0) TCGA-66-2795-01 3 171427430 171427430 G A PLD1 Silent p.I327I 0.16 TCGA-66-2795-01 3 182553841 182553841 C T ATP11B Missense_Mutation p.R112W 0.30 deleterious(0) probably_damaging(1) TCGA-66-2795-01 3 3886844 3886844 C G LRRN1 Missense_Mutation p.H173Q 0.45 deleterious(0) probably_damaging(0.968) TCGA-66-2795-01 3 40574078 40574078 G T ZNF621 Missense_Mutation p.G273C 0.45 deleterious(0.03) probably_damaging(0.979) TCGA-66-2795-01 3 46415167 46415167 C A CCR5 Missense_Mutation p.N258K 0.37 tolerated(0.3) benign(0.102) TCGA-66-2795-01 3 49166717 49166717 C A LAMB2 Missense_Mutation p.R520L 0.52 deleterious(0) probably_damaging(0.937) TCGA-66-2795-01 3 51265418 51265418 G T DOCK3 Missense_Mutation p.D516Y 0.52 deleterious(0) probably_damaging(0.99) TCGA-66-2795-01 3 52740666 52740666 A T SPCS1 Nonsense_Mutation p.K82* 0.42 TCGA-66-2795-01 3 64636807 64636807 C A ADAMTS9 Missense_Mutation p.C450F 0.15 deleterious(0) probably_damaging(1) TCGA-66-2795-01 3 95374383 95374383 T C MTHFD2P1 RNA 0.24 TCGA-66-2795-01 3 97596805 97596805 G T CRYBG3 Missense_Mutation p.G308V 0.21 deleterious(0.02) benign(0.093) TCGA-66-2795-01 3 98189081 98189081 A G OR5K1 Missense_Mutation p.I221V 0.23 tolerated(0.88) probably_damaging(0.992) TCGA-66-2795-01 4 103644062 103644062 T C MANBA Missense_Mutation p.Q172R 0.53 deleterious(0.03) probably_damaging(0.999) TCGA-66-2795-01 4 115585164 115585164 G T UGT8 Missense_Mutation p.W279L 0.40 tolerated(0.06) benign(0.211) TCGA-66-2795-01 4 123317446 123317446 T C ADAD1 Missense_Mutation p.V213A 0.41 deleterious(0) benign(0.297) TCGA-66-2795-01 4 164393684 164393684 G A TKTL2 Silent p.F401F 0.44 TCGA-66-2795-01 4 176622806 176622806 C T GPM6A Silent p.A50A 0.37 TCGA-66-2795-01 4 42487624 42487624 T A ATP8A1 Missense_Mutation p.N738I 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-66-2795-01 4 4864840 4864840 T C MSX1 Silent p.H294H 0.23 TCGA-66-2795-01 4 79403008 79403008 G C FRAS1 Missense_Mutation p.A2832P 0.36 benign(0.271) TCGA-66-2795-01 4 8607752 8607752 G A CPZ Missense_Mutation p.G249D 0.37 deleterious(0) probably_damaging(1) TCGA-66-2795-01 4 95162117 95162117 T A SMARCAD1 Missense_Mutation p.F222Y 0.45 tolerated(1) benign(0.016) TCGA-66-2795-01 5 11159741 11159741 C T CTNND2 Silent p.R702R 0.42 TCGA-66-2795-01 5 127614475 127614475 G C FBN2 Silent p.S2399S 0.22 TCGA-66-2795-01 5 132240074 132240074 C G AFF4 Missense_Mutation p.G358A 0.23 tolerated(0.14) benign(0.009) TCGA-66-2795-01 5 140188634 140188634 C T PCDHA4 Missense_Mutation p.P621L 0.16 tolerated_low_confidence(0.07) benign(0.013) TCGA-66-2795-01 5 140537081 140537081 C T PCDHB17 Missense_Mutation p.A502V 0.35 deleterious_low_confidence(0.01) benign(0.287) TCGA-66-2795-01 5 140596009 140596009 C A PCDHB13 Missense_Mutation p.P772T 0.30 deleterious_low_confidence(0.02) benign(0.096) TCGA-66-2795-01 5 140732021 140732021 G A PCDHGB1 Missense_Mutation p.G732R 0.33 tolerated(0.13) benign(0.015) TCGA-66-2795-01 5 140744378 140744378 G T PCDHGA5 Missense_Mutation p.D161Y 0.32 deleterious_low_confidence(0) probably_damaging(1) TCGA-66-2795-01 5 140807686 140807686 C A PCDHGB6 Intron 0.24 TCGA-66-2795-01 5 153406071 153406071 G C FAM114A2 Missense_Mutation p.I267M 0.45 deleterious(0.02) benign(0.444) TCGA-66-2795-01 5 156378734 156378734 G T TIMD4 Silent p.T156T 0.25 TCGA-66-2795-01 5 156608051 156608051 T A ITK Silent p.T21T 0.25 TCGA-66-2795-01 5 171297857 171297857 C G FBXW11 Missense_Mutation p.W428S 0.21 deleterious(0) probably_damaging(0.984) TCGA-66-2795-01 5 171833301 171833301 C A SH3PXD2B Missense_Mutation p.R71L 0.30 deleterious(0) probably_damaging(1) TCGA-66-2795-01 5 21459788 21459788 G A GUSBP1 Intron 0.13 TCGA-66-2795-01 5 26902777 26902777 G T CDH9 Missense_Mutation p.P354H 0.36 deleterious(0.02) possibly_damaging(0.776) TCGA-66-2795-01 5 31521266 31521266 T G DROSHA Missense_Mutation p.E304A 0.25 tolerated_low_confidence(0.14) benign(0.073) TCGA-66-2795-01 5 33938277 33938277 G C RXFP3 3'UTR 0.33 TCGA-66-2795-01 5 41018458 41018458 C G MROH2B Silent p.L916L 0.37 TCGA-66-2795-01 5 45267343 45267343 A T HCN1 Missense_Mutation p.L544Q 0.26 deleterious(0) probably_damaging(1) TCGA-66-2795-01 5 61923053 61923053 G A IPO11 Missense_Mutation p.E986K 0.23 tolerated(0.43) benign(0.167) TCGA-66-2795-01 5 65470820 65470820 A G SREK1 Missense_Mutation p.T511A 0.21 deleterious_low_confidence(0.01) unknown(0) TCGA-66-2795-01 5 6620317 6620317 G C NSUN2 Silent p.V239V 0.10 TCGA-66-2795-01 5 82841392 82841392 G T VCAN Missense_Mutation p.G3101V 0.35 deleterious(0) probably_damaging(0.999) TCGA-66-2795-01 5 82875859 82875859 G T VCAN Missense_Mutation p.R3314L 0.22 deleterious(0) probably_damaging(0.999) TCGA-66-2795-01 5 90074906 90074906 C A GPR98 Silent p.L4358L 0.35 TCGA-66-2795-01 6 132206132 132206132 C A ENPP1 Silent p.V791V 0.42 TCGA-66-2795-01 6 157522468 157522468 G T ARID1B Missense_Mutation p.M1580I 0.43 possibly_damaging(0.871) TCGA-66-2795-01 6 161139439 161139439 G T PLG Missense_Mutation p.A301S 0.55 tolerated(1) benign(0.01) TCGA-66-2795-01 6 161587445 161587445 C A AGPAT4 Silent p.L61L 0.42 TCGA-66-2795-01 6 28053949 28053949 G A ZNF165 Splice_Site p.X138_splice 0.23 TCGA-66-2795-01 6 28543760 28543760 G T SCAND3 Missense_Mutation p.T241N 0.25 tolerated_low_confidence(0.17) benign(0.009) TCGA-66-2795-01 6 31842560 31842560 C T SLC44A4 Missense_Mutation p.V136I 0.13 tolerated(0.21) benign(0.4) TCGA-66-2795-01 6 35090020 35090020 T A TCP11 Missense_Mutation p.H164L 0.37 deleterious(0) possibly_damaging(0.588) TCGA-66-2795-01 6 36275604 36275604 G C PNPLA1 3'UTR 0.40 TCGA-66-2795-01 6 41037854 41037854 C A OARD1 Silent p.V68V 0.25 TCGA-66-2795-01 6 43155591 43155591 G A CUL9 Silent p.L574L 0.25 TCGA-66-2795-01 6 43306887 43306887 G C ZNF318 Missense_Mutation p.P1617A 0.33 benign(0.004) TCGA-66-2795-01 6 44921148 44921148 C G SUPT3H Missense_Mutation p.D245H 0.27 deleterious(0) probably_damaging(0.962) TCGA-66-2795-01 6 49604511 49604511 G A RHAG Silent p.F5F 0.48 TCGA-66-2795-01 6 57398208 57398208 G A PRIM2 Missense_Mutation p.G304E 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-66-2795-01 6 90440607 90440607 C T MDN1 Missense_Mutation p.A1660T 0.53 benign(0.265) TCGA-66-2795-01 6 96034909 96034909 A G MANEA Intron 0.54 TCGA-66-2795-01 6 97562194 97562194 G T KLHL32 Missense_Mutation p.R388L 0.65 deleterious(0) probably_damaging(0.999) TCGA-66-2795-01 7 103237091 103237091 C A RELN Silent p.L1117L 0.35 TCGA-66-2795-01 7 116340287 116340287 G T MET Silent p.V383V 0.23 TCGA-66-2795-01 7 119914843 119914843 C G KCND2 Missense_Mutation p.Q53E 0.27 tolerated(1) benign(0.028) TCGA-66-2795-01 7 128485260 128485260 G A FLNC Silent p.A1247A 0.37 TCGA-66-2795-01 7 137172389 137172389 C G DGKI Missense_Mutation p.E783D 0.27 tolerated(0.08) benign(0.024) TCGA-66-2795-01 7 141736005 141736005 C A MGAM Missense_Mutation p.P666T 0.24 tolerated(1) benign(0.001) TCGA-66-2795-01 7 15725863 15725863 G T MEOX2 Missense_Mutation p.N55K 0.56 tolerated(0.66) benign(0.057) TCGA-66-2795-01 7 34094843 34094843 T C BMPER Silent p.C285C 0.30 TCGA-66-2795-01 7 35919506 35919506 G T SEPT7 Missense_Mutation p.A197S 0.46 tolerated(0.17) possibly_damaging(0.785) TCGA-66-2795-01 7 37780665 37780665 C A GPR141 Missense_Mutation p.Q224K 0.29 deleterious(0) probably_damaging(0.998) TCGA-66-2795-01 7 57187643 57187643 G T ZNF479 Nonsense_Mutation p.Y493* 0.33 TCGA-66-2795-01 7 6189676 6189676 G A USP42 Missense_Mutation p.E617K 0.38 deleterious(0.03) probably_damaging(0.95) TCGA-66-2795-01 7 65444483 65444483 G A GUSB Silent p.F209F 0.41 TCGA-66-2795-01 7 71177096 71177096 G T WBSCR17 Missense_Mutation p.G588C 0.25 deleterious(0) probably_damaging(1) TCGA-66-2795-01 7 75168666 75168666 C A HIP1 Missense_Mutation p.G1013V 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-66-2795-01 7 81978881 81978881 C G CACNA2D1 Intron 0.25 TCGA-66-2795-01 7 81978903 81978903 C T CACNA2D1 Missense_Mutation p.G53E 0.28 deleterious(0.01) probably_damaging(0.979) TCGA-66-2795-01 7 82764209 82764209 C A PCLO Missense_Mutation p.G886V 0.32 unknown(0) TCGA-66-2795-01 7 88965101 88965101 G C ZNF804B Missense_Mutation p.K935N 0.28 deleterious(0) probably_damaging(0.999) TCGA-66-2795-01 7 94057744 94057744 C G COL1A2 Missense_Mutation p.D1222E 0.32 unknown(0) TCGA-66-2795-01 8 113484877 113484877 T A CSMD3 Nonsense_Mutation p.K1780* 0.30 TCGA-66-2795-01 8 113694737 113694737 C T CSMD3 Missense_Mutation p.E871K 0.25 tolerated(0.08) probably_damaging(0.932) TCGA-66-2795-01 8 120594825 120594825 G A ENPP2 Missense_Mutation p.P573S 0.26 deleterious(0.03) probably_damaging(0.969) TCGA-66-2795-01 8 121292969 121292969 G T COL14A1 Missense_Mutation p.K1222N 0.41 deleterious(0) benign(0.082) TCGA-66-2795-01 8 121706117 121706117 C T SNTB1 Silent p.V201V 0.17 TCGA-66-2795-01 8 133036764 133036764 C G OC90 Silent p.L466L 0.26 TCGA-66-2795-01 8 133053809 133053809 A C OC90 Missense_Mutation p.F103V 0.34 deleterious(0) probably_damaging(0.994) TCGA-66-2795-01 8 17090016 17090016 C G CNOT7 Missense_Mutation p.E217Q 0.41 tolerated(0.5) benign(0.001) TCGA-66-2795-01 8 17137762 17137762 T C VPS37A Silent p.L286L 0.44 TCGA-66-2795-01 8 22012074 22012074 G A LGI3 Missense_Mutation p.L117F 0.47 deleterious(0.03) probably_damaging(0.994) TCGA-66-2795-01 8 22102500 22102500 C T POLR3D 5'Flank 0.52 TCGA-66-2795-01 8 54963627 54963627 G A LYPLA1 Missense_Mutation p.P195L 0.31 deleterious(0) possibly_damaging(0.664) TCGA-66-2795-01 8 56270408 56270408 T G XKR4 Missense_Mutation p.V326G 0.31 deleterious(0) possibly_damaging(0.492) TCGA-66-2795-01 8 70570945 70570945 T C SULF1 3'UTR 0.46 TCGA-66-2795-01 8 74621306 74621306 C G STAU2 Missense_Mutation p.Q25H 0.25 deleterious(0) probably_damaging(0.937) TCGA-66-2795-01 8 88249239 88249239 C A CNBD1 Missense_Mutation p.P224T 0.24 tolerated(0.91) benign(0) TCGA-66-2795-01 9 101980956 101980956 C T ALG2 Missense_Mutation p.D171N 0.25 tolerated(0.05) possibly_damaging(0.861) TCGA-66-2795-01 9 115760266 115760266 T C ZNF883 RNA 0.39 TCGA-66-2795-01 9 123220895 123220895 C G CDK5RAP2 Missense_Mutation p.M736I 0.10 tolerated(0.37) benign(0) TCGA-66-2795-01 9 130869708 130869708 C A SLC25A25 Silent p.G499G 0.21 TCGA-66-2795-01 9 131021485 131021485 C T GOLGA2 Silent p.A659A 0.24 TCGA-66-2795-01 9 132484622 132484622 G T PRRX2 Silent p.T251T 0.39 TCGA-66-2795-01 9 138439740 138439740 C A OBP2A Missense_Mutation p.L101M 0.31 deleterious(0.01) possibly_damaging(0.839) TCGA-66-2795-01 9 139402784 139402784 C T NOTCH1 Nonsense_Mutation p.W1075* 0.15 TCGA-66-2795-01 9 32541567 32541567 G A TOPORS Missense_Mutation p.P986S 0.72 tolerated_low_confidence(0.24) unknown(0) TCGA-66-2795-01 9 43626967 43626967 G T SPATA31A6 Missense_Mutation p.Q574K 0.35 tolerated(0.11) benign(0.082) TCGA-66-2795-01 9 43626968 43626968 G T SPATA31A6 Silent p.P573P 0.35 TCGA-66-2795-01 9 85607851 85607851 G A RASEF Silent p.V670V 0.34 TCGA-66-2795-01 9 90388065 90388065 A T CTSL3P RNA 0.33 TCGA-66-2795-01 9 97333785 97333785 G A FBP2 Missense_Mutation p.L176F 0.19 deleterious(0.01) probably_damaging(1) TCGA-66-2795-01 9 98669439 98669439 C G ERCC6L2 Missense_Mutation p.T236S 0.32 tolerated(0.92) benign(0.008) TCGA-66-2795-01 9 99797040 99797040 C T CTSV Silent p.S291S 0.27 TCGA-66-2795-01 X 104464313 104464313 C A TEX13A Nonsense_Mutation p.G189* 0.42 TCGA-66-2795-01 X 118699347 118699347 C T CXorf56 5'UTR 0.57 TCGA-66-2795-01 X 124097479 124097479 A T TENM1 Missense_Mutation p.S42T 0.10 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-66-2795-01 X 132162097 132162097 C A USP26 Missense_Mutation p.R51L 0.52 tolerated(0.07) benign(0.001) TCGA-66-2795-01 X 14708972 14708972 G T GLRA2 Missense_Mutation p.R357S 0.59 tolerated(0.37) benign(0.006) TCGA-66-2795-01 X 151561985 151561985 A G GABRA3 Intron 0.46 TCGA-66-2795-01 X 30260360 30260360 A G MAGEB4 Silent p.E36E 0.53 TCGA-66-2795-01 X 37027451 37027451 C T FAM47C Missense_Mutation p.S323F 0.65 deleterious(0.01) possibly_damaging(0.689) TCGA-66-2795-01 X 37028697 37028697 C T FAM47C Silent p.L738L 0.71 TCGA-66-2795-01 X 44929602 44929602 G A KDM6A Missense_Mutation p.R901K 0.57 tolerated(0.29) benign(0.443) TCGA-66-2795-01 X 47774986 47774986 A G ZNF81 Missense_Mutation p.K314R 0.69 deleterious(0.03) probably_damaging(0.989) TCGA-66-2795-01 X 70612518 70612518 G T TAF1 Missense_Mutation p.G981C 0.58 deleterious(0) probably_damaging(1) TCGA-66-2795-01 X 70612519 70612519 G T TAF1 Missense_Mutation p.G981V 0.57 deleterious(0) probably_damaging(1) TCGA-66-2795-01 X 91090613 91090613 A T PCDH11X Missense_Mutation p.N37I 0.50 deleterious(0) probably_damaging(1) TCGA-66-2800-01 10 104445666 104445666 G A ARL3 Silent p.A136A 0.03 TCGA-66-2800-01 10 17157571 17157571 C G CUBN Missense_Mutation p.G207R 0.54 deleterious(0) probably_damaging(1) TCGA-66-2800-01 10 29578106 29578106 A T LYZL1 Silent p.A20A 0.52 TCGA-66-2800-01 10 72619134 72619134 G C SGPL1 Missense_Mutation p.G165R 0.64 tolerated(0.08) possibly_damaging(0.707) TCGA-66-2800-01 11 108119810 108119810 G A ATM Missense_Mutation p.D406N 0.16 tolerated(0.06) probably_damaging(0.998) TCGA-66-2800-01 11 111946377 111946377 A T C11orf57 Intron 0.48 TCGA-66-2800-01 11 113650575 113650575 G T CLDN25 Missense_Mutation p.G20C 0.19 deleterious(0) probably_damaging(1) TCGA-66-2800-01 11 119054075 119054075 G A NLRX1 Missense_Mutation p.R952H 0.04 deleterious(0) possibly_damaging(0.542) TCGA-66-2800-01 11 125513737 125513737 G T CHEK1 Nonsense_Mutation p.G289* 0.35 TCGA-66-2800-01 11 50003668 50003668 T C OR4C12 Missense_Mutation p.I124V 0.20 deleterious_low_confidence(0) benign(0.015) TCGA-66-2800-01 11 5475618 5475618 C A OR51I2 Silent p.R300R 0.45 TCGA-66-2800-01 11 55594695 55594695 A T OR5L2 Translation_Start_Site p.M1? 0.03 tolerated(0.07) benign(0.09) TCGA-66-2800-01 11 55904489 55904489 T C OR8J3 Missense_Mutation p.K236E 0.14 deleterious(0) possibly_damaging(0.816) TCGA-66-2800-01 11 56380583 56380583 G A OR5M1 Silent p.Y132Y 0.17 TCGA-66-2800-01 11 64434732 64434732 A G NRXN2 Silent p.D596D 0.19 TCGA-66-2800-01 11 67250552 67250552 G T AIP 5'UTR 0.11 TCGA-66-2800-01 11 71726893 71726893 C A NUMA1 Missense_Mutation p.Q552H 0.18 probably_damaging(0.999) TCGA-66-2800-01 11 73714740 73714740 A T UCP3 Intron 0.45 TCGA-66-2800-01 11 73849786 73849786 G C C2CD3 Missense_Mutation p.P312A 0.50 tolerated(0.9) benign(0.048) TCGA-66-2800-01 11 76980007 76980007 G T GDPD4 Missense_Mutation p.P196T 0.54 deleterious(0) probably_damaging(0.993) TCGA-66-2800-01 11 8751700 8751700 G A ST5 Silent p.S379S 0.05 TCGA-66-2800-01 11 92881946 92881946 G C SLC36A4 Missense_Mutation p.S424R 0.55 deleterious(0) probably_damaging(0.999) TCGA-66-2800-01 11 94602404 94602404 C T AMOTL1 Missense_Mutation p.P844S 0.50 tolerated(0.17) benign(0.009) TCGA-66-2800-01 12 102591380 102591381 - T PMCH Frame_Shift_Ins p.S57Ifs*11 0.40 TCGA-66-2800-01 12 111786272 111786272 T A CUX2 3'UTR 0.42 TCGA-66-2800-01 12 11545798 11545798 G T PRB2 Missense_Mutation p.P405H 0.70 deleterious_low_confidence(0) unknown(0) TCGA-66-2800-01 12 119617322 119617322 G T HSPB8 Missense_Mutation p.V69L 0.49 tolerated(1) benign(0.016) TCGA-66-2800-01 12 122685401 122685401 G A LRRC43 Missense_Mutation p.A577T 0.05 tolerated(0.09) benign(0.026) TCGA-66-2800-01 12 13061273 13061273 C T GPRC5A Silent p.V30V 0.69 TCGA-66-2800-01 12 2224643 2224643 C A CACNA1C Silent p.P101P 0.75 TCGA-66-2800-01 12 22676469 22676469 C A C2CD5 Nonsense_Mutation p.E231* 0.60 TCGA-66-2800-01 12 3763445 3763445 G A EFCAB4B Nonsense_Mutation p.Q327* 0.05 TCGA-66-2800-01 12 69126449 69126449 G T NUP107 Missense_Mutation p.W677C 0.43 deleterious(0) probably_damaging(0.986) TCGA-66-2800-01 12 70731262 70731262 A C CNOT2 Missense_Mutation p.D290A 0.18 tolerated(0.07) benign(0.079) TCGA-66-2800-01 12 81545793 81545793 C T ACSS3 Missense_Mutation p.A339V 0.46 deleterious(0) probably_damaging(0.955) TCGA-66-2800-01 12 95228799 95228799 C A MIR492 3'Flank 0.29 TCGA-66-2800-01 13 101756667 101756667 T A NALCN Silent p.V956V 0.47 TCGA-66-2800-01 13 25745389 25745389 C A AMER2 Silent p.P123P 0.75 TCGA-66-2800-01 13 33635674 33635674 G C KL Missense_Mutation p.D820H 0.48 deleterious(0.03) benign(0.261) TCGA-66-2800-01 13 47409423 47409423 C T HTR2A Missense_Mutation p.C322Y 0.61 deleterious(0) possibly_damaging(0.693) TCGA-66-2800-01 13 49852631 49852631 C A CDADC1 Missense_Mutation p.A399E 0.53 deleterious(0) probably_damaging(0.991) TCGA-66-2800-01 14 101491380 101491380 T C MIR380 RNA 0.76 TCGA-66-2800-01 14 20692373 20692373 G A OR11H6 Missense_Mutation p.G169S 0.33 tolerated(0.58) benign(0.002) TCGA-66-2800-01 14 35280155 35280155 T C BAZ1A Silent p.K208K 0.72 TCGA-66-2800-01 14 64687205 64687205 C A SYNE2 Missense_Mutation p.N6637K 0.52 possibly_damaging(0.618) TCGA-66-2800-01 14 93424701 93424701 A C ITPK1 Missense_Mutation p.V172G 0.66 deleterious(0) probably_damaging(0.921) TCGA-66-2800-01 15 22473189 22473189 G T IGHV4OR15-8 Missense_Mutation p.P28T 0.05 deleterious(0.02) benign(0.1) TCGA-66-2800-01 15 30665292 30665292 G C CHRFAM7A Missense_Mutation p.H73D 0.16 deleterious(0.02) benign(0.004) TCGA-66-2800-01 15 34151810 34151810 C A RYR3 Missense_Mutation p.A4726E 0.06 probably_damaging(0.999) TCGA-66-2800-01 15 41800368 41800368 T C LTK Missense_Mutation p.H383R 0.46 deleterious_low_confidence(0.01) probably_damaging(0.977) TCGA-66-2800-01 15 45848083 45848083 C A RP11-96O20.2 5'Flank 0.12 TCGA-66-2800-01 15 58853108 58853108 C A LIPC Missense_Mutation p.T366K 0.38 tolerated(1) benign(0.001) TCGA-66-2800-01 15 65625636 65625636 G A IGDCC3 Missense_Mutation p.T314I 0.52 deleterious(0) probably_damaging(0.998) TCGA-66-2800-01 15 75654219 75654219 C A MAN2C1 Nonsense_Mutation p.E360* 0.15 TCGA-66-2800-01 15 85327839 85327839 G A ZNF592 Missense_Mutation p.V645I 0.05 tolerated(0.28) probably_damaging(0.994) TCGA-66-2800-01 16 10031933 10031933 C A GRIN2A Missense_Mutation p.G297V 0.58 deleterious(0.05) possibly_damaging(0.863) TCGA-66-2800-01 16 20329723 20329723 C T GP2 Missense_Mutation p.G349E 0.52 deleterious(0) probably_damaging(1) TCGA-66-2800-01 16 2817210 2817232 CCTTGCCAGCAGGATTCCTGCAG - SRRM2 Frame_Shift_Del p.A2229Cfs*22 0.12 TCGA-66-2800-01 16 70504960 70504960 G A FUK Silent p.Q385Q 0.14 TCGA-66-2800-01 16 74725174 74725174 C T MLKL Splice_Site p.X241_splice 0.02 TCGA-66-2800-01 17 16004652 16004652 C A NCOR1 Missense_Mutation p.A868S 0.17 benign(0.021) TCGA-66-2800-01 17 1792101 1792101 T C RPA1 Missense_Mutation p.C503R 0.38 deleterious(0) probably_damaging(1) TCGA-66-2800-01 17 18380162 18380162 T A LGALS9C 5'UTR 0.41 TCGA-66-2800-01 17 21911044 21911044 C A RP11-744K17.9 RNA 0.31 TCGA-66-2800-01 17 2323574 2323574 G C METTL16 Missense_Mutation p.P460R 0.38 tolerated_low_confidence(0.22) benign(0.002) TCGA-66-2800-01 17 38152592 38152592 G A PSMD3 Splice_Site p.X492_splice 0.03 TCGA-66-2800-01 17 38859990 38859990 G A KRT24 5'UTR 0.12 TCGA-66-2800-01 17 39727856 39727856 C A KRT9 Missense_Mutation p.G130V 0.30 deleterious_low_confidence(0.02) unknown(0) TCGA-66-2800-01 17 40021156 40021156 G T KLHL11 Silent p.A156A 0.42 TCGA-66-2800-01 17 56051849 56051849 T C VEZF1 Silent p.T517T 0.34 TCGA-66-2800-01 17 61995723 61995723 C A GH1 Missense_Mutation p.D52Y 0.10 deleterious(0) probably_damaging(0.996) TCGA-66-2800-01 17 62045698 62045698 C A SCN4A Missense_Mutation p.G241W 0.36 deleterious(0) probably_damaging(0.997) TCGA-66-2800-01 17 6939691 6939691 T A SLC16A13 5'UTR 0.37 TCGA-66-2800-01 17 7577547 7577547 C A TP53 Missense_Mutation p.G245V 0.57 deleterious(0) probably_damaging(1) TCGA-66-2800-01 17 7837842 7837842 G A CNTROB Missense_Mutation p.D139N 0.09 deleterious(0.04) possibly_damaging(0.864) TCGA-66-2800-01 17 7840481 7840481 G A CNTROB Splice_Site p.X277_splice 0.06 TCGA-66-2800-01 17 9837542 9837542 C - GAS7 Frame_Shift_Del p.A276Pfs*3 0.35 TCGA-66-2800-01 18 19345762 19345762 A T MIB1 Missense_Mutation p.T87S 0.29 tolerated(0.55) possibly_damaging(0.745) TCGA-66-2800-01 18 21523757 21523757 A T LAMA3 Missense_Mutation p.Q3011L 0.39 benign(0.003) TCGA-66-2800-01 18 30825250 30825250 C A CCDC178 Nonsense_Mutation p.E518* 0.31 TCGA-66-2800-01 18 32886765 32886765 G - ZNF271 RNA 0.24 TCGA-66-2800-01 18 5428395 5428395 G A EPB41L3 Nonsense_Mutation p.R328* 0.38 TCGA-66-2800-01 18 55143669 55143669 C T ONECUT2 Missense_Mutation p.A410V 0.33 tolerated(0.05) benign(0.069) TCGA-66-2800-01 18 56274624 56274624 C T ALPK2 Missense_Mutation p.D53N 0.32 deleterious(0.04) possibly_damaging(0.692) TCGA-66-2800-01 19 10071107 10071107 G A COL5A3 Missense_Mutation p.P1740S 0.27 unknown(0) TCGA-66-2800-01 19 10131387 10131387 G T RDH8 Missense_Mutation p.V169F 0.44 deleterious(0.04) possibly_damaging(0.851) TCGA-66-2800-01 19 15918197 15918197 G T OR10H1 Silent p.L217L 0.36 TCGA-66-2800-01 19 17169361 17169361 G A HAUS8 Nonsense_Mutation p.Q215* 0.31 TCGA-66-2800-01 19 17648193 17648193 A T FAM129C Missense_Mutation p.T177S 0.34 tolerated(0.43) benign(0.228) TCGA-66-2800-01 19 36303539 36303539 G T PRODH2 Missense_Mutation p.L133M 0.13 tolerated(0.32) possibly_damaging(0.596) TCGA-66-2800-01 19 37118098 37118098 G T ZNF382 Missense_Mutation p.E433D 0.14 deleterious(0) probably_damaging(0.986) TCGA-66-2800-01 19 39330739 39330739 C T AC104534.3 Silent p.E27E 0.03 TCGA-66-2800-01 19 4012993 4012993 C G PIAS4 Missense_Mutation p.L34V 0.37 deleterious(0.02) probably_damaging(0.942) TCGA-66-2800-01 19 41703718 41703718 G A CYP2S1 Silent p.Q126Q 0.03 TCGA-66-2800-01 19 43864424 43864424 G T CD177 3'UTR 0.19 TCGA-66-2800-01 19 46320221 46320221 G A SYMPK Silent p.Y1031Y 0.35 TCGA-66-2800-01 19 50461997 50461997 C G SIGLEC11 Missense_Mutation p.E422D 0.63 tolerated(0.07) possibly_damaging(0.6) TCGA-66-2800-01 19 51215219 51215219 C A SHANK1 Missense_Mutation p.W315C 0.54 probably_damaging(0.997) TCGA-66-2800-01 19 57293332 57293332 A T ZIM2 Missense_Mutation p.L212Q 0.54 deleterious(0) probably_damaging(1) TCGA-66-2800-01 19 59063771 59063771 C T CHMP2A Missense_Mutation p.R68H 0.03 deleterious(0) probably_damaging(0.999) TCGA-66-2800-01 19 9063009 9063009 G T MUC16 Missense_Mutation p.P8146H 0.04 unknown(0) TCGA-66-2800-01 1 11918893 11918893 C T NPPB 5'UTR 0.04 TCGA-66-2800-01 1 144886121 144886121 C G PDE4DIP Missense_Mutation p.G1038A 0.11 deleterious(0) probably_damaging(1) TCGA-66-2800-01 1 146714352 146714352 C A CHD1L 5'UTR 0.72 TCGA-66-2800-01 1 14925537 14925537 C T KAZN Missense_Mutation p.A15V 0.52 deleterious(0.03) possibly_damaging(0.75) TCGA-66-2800-01 1 151060740 151060740 G T GABPB2 Missense_Mutation p.L25F 0.50 deleterious(0) probably_damaging(0.977) TCGA-66-2800-01 1 152883951 152883951 C A IVL Missense_Mutation p.P560T 0.45 tolerated_low_confidence(0.06) unknown(0) TCGA-66-2800-01 1 154317830 154317830 G T ATP8B2 Nonsense_Mutation p.E868* 0.65 TCGA-66-2800-01 1 175092654 175092654 C T TNN Silent p.D923D 0.20 TCGA-66-2800-01 1 179821821 179821821 G A TOR1AIP2 5'UTR 0.16 TCGA-66-2800-01 1 180135629 180135629 G T QSOX1 Missense_Mutation p.W90L 0.10 deleterious(0) probably_damaging(1) TCGA-66-2800-01 1 200567388 200567388 C A KIF14 Silent p.G842G 0.30 TCGA-66-2800-01 1 204429749 204429749 G A PIK3C2B Missense_Mutation p.R451C 0.14 deleterious(0.01) probably_damaging(0.976) TCGA-66-2800-01 1 212799679 212799679 G T FAM71A Missense_Mutation p.R487M 0.13 tolerated(0.05) benign(0.054) TCGA-66-2800-01 1 216219911 216219911 C A USH2A Missense_Mutation p.V2063L 0.13 benign(0.003) TCGA-66-2800-01 1 222904850 222904850 G A BROX Missense_Mutation p.D381N 0.20 tolerated(0.51) benign(0.002) TCGA-66-2800-01 1 237947189 237947189 G A RYR2 Silent p.T4059T 0.15 TCGA-66-2800-01 1 27121695 27121695 G T PIGV Silent p.L390L 0.07 TCGA-66-2800-01 1 57395227 57395227 G A C8B Silent p.T542T 0.44 TCGA-66-2800-01 1 90470764 90470764 A G ZNF326 Missense_Mutation p.Y57C 0.60 deleterious(0) probably_damaging(0.99) TCGA-66-2800-01 20 2843131 2843131 C A VPS16 Intron 0.28 TCGA-66-2800-01 20 33586326 33586326 G A MYH7B Missense_Mutation p.R1338H 0.04 probably_damaging(0.991) TCGA-66-2800-01 20 3730636 3730636 G C HSPA12B Missense_Mutation p.G355R 0.29 deleterious(0) probably_damaging(0.915) TCGA-66-2800-01 20 42252561 42252561 G A IFT52 Missense_Mutation p.A267T 0.41 tolerated(0.21) benign(0.002) TCGA-66-2800-01 20 47297836 47297836 T G PREX1 Missense_Mutation p.S458R 0.31 tolerated(0.12) benign(0.11) TCGA-66-2800-01 20 60699680 60699680 C T LSM14B Silent p.S45S 0.05 TCGA-66-2800-01 20 61444505 61444505 G A OGFR Missense_Mutation p.G513D 0.17 tolerated(0.07) benign(0.3) TCGA-66-2800-01 20 865720 865720 C A ANGPT4 Splice_Site p.X279_splice 0.39 TCGA-66-2800-01 21 10969095 10969095 C A TPTE Silent p.R51R 0.40 TCGA-66-2800-01 21 32624423 32624423 C A TIAM1 Missense_Mutation p.R349L 0.06 tolerated(0.32) possibly_damaging(0.507) TCGA-66-2800-01 22 23476328 23476328 G A RTDR1 Silent p.Y102Y 0.41 TCGA-66-2800-01 22 25601324 25601324 C T CRYBB3 Silent p.N155N 0.06 TCGA-66-2800-01 22 26747016 26747016 A C SEZ6L Splice_Site p.X803_splice 0.33 TCGA-66-2800-01 22 32445945 32445945 A C SLC5A1 Missense_Mutation p.N51H 0.42 deleterious(0) possibly_damaging(0.619) TCGA-66-2800-01 22 40074003 40074003 G A CACNA1I Missense_Mutation p.E1649K 0.40 tolerated(0.17) possibly_damaging(0.635) TCGA-66-2800-01 22 44285214 44285214 G T PNPLA5 Missense_Mutation p.L233I 0.39 deleterious(0.05) benign(0.001) TCGA-66-2800-01 22 44602448 44602448 T C PARVG 3'UTR 0.28 TCGA-66-2800-01 2 101656738 101656738 G A TBC1D8 Missense_Mutation p.R313C 0.16 deleterious(0) probably_damaging(0.992) TCGA-66-2800-01 2 113532838 113532838 G A IL1A Missense_Mutation p.P208S 0.04 tolerated(0.08) possibly_damaging(0.859) TCGA-66-2800-01 2 121036296 121036296 T C RALB Missense_Mutation p.M19T 0.34 deleterious(0.03) probably_damaging(0.981) TCGA-66-2800-01 2 136562337 136562337 C T LCT Silent p.Q1488Q 0.41 TCGA-66-2800-01 2 1653368 1653368 G A PXDN Silent p.R728R 0.04 TCGA-66-2800-01 2 174820742 174820742 G A SP3 Silent p.S166S 0.54 TCGA-66-2800-01 2 180815589 180815589 T C CWC22 Missense_Mutation p.I628V 0.50 deleterious(0.01) possibly_damaging(0.764) TCGA-66-2800-01 2 186673252 186673252 G A FSIP2 Missense_Mutation p.E6496K 0.51 benign(0.009) TCGA-66-2800-01 2 187694599 187694599 T C ZSWIM2 Missense_Mutation p.Y317C 0.52 tolerated(0.21) benign(0.002) TCGA-66-2800-01 2 209028060 209028060 G T CRYGA Missense_Mutation p.S40R 0.08 deleterious(0.03) probably_damaging(0.993) TCGA-66-2800-01 2 216288136 216288136 T A FN1 Nonsense_Mutation p.K444* 0.50 TCGA-66-2800-01 2 220111955 220111955 G T STK16 Missense_Mutation p.G143C 0.11 deleterious(0.02) probably_damaging(0.987) TCGA-66-2800-01 2 225378357 225378357 T C CUL3 Splice_Site p.X180_splice 0.14 TCGA-66-2800-01 2 239344490 239344490 A C ASB1 Missense_Mutation p.K110N 0.07 deleterious(0) probably_damaging(1) TCGA-66-2800-01 2 242066525 242066525 G A PASK Missense_Mutation p.A602V 0.08 tolerated(0.09) benign(0.053) TCGA-66-2800-01 2 24245357 24245357 C T MFSD2B Missense_Mutation p.H317Y 0.38 tolerated(0.06) probably_damaging(0.995) TCGA-66-2800-01 2 26739434 26739434 T G OTOF Missense_Mutation p.T121P 0.39 tolerated(1) benign(0.058) TCGA-66-2800-01 2 31588405 31588405 C A XDH Missense_Mutation p.G821V 0.36 deleterious(0) probably_damaging(0.974) TCGA-66-2800-01 2 49190321 49190321 C A FSHR Missense_Mutation p.G547C 0.33 tolerated(0.06) benign(0.036) TCGA-66-2800-01 2 79312225 79312225 G T REG1B 3'UTR 0.23 TCGA-66-2800-01 2 89339859 89339859 A T IGKV1-12 Nonsense_Mutation p.Y71* 0.26 TCGA-66-2800-01 2 90121855 90121855 C T IGKV1D-17 Nonsense_Mutation p.Q25* 0.28 TCGA-66-2800-01 2 98797501 98797501 G T VWA3B Missense_Mutation p.E379D 0.30 tolerated(0.2) benign(0.005) TCGA-66-2800-01 3 101086710 101086710 T C SENP7 Silent p.Q314Q 0.43 TCGA-66-2800-01 3 107491664 107491664 G A BBX Missense_Mutation p.D366N 0.05 tolerated(0.13) benign(0.274) TCGA-66-2800-01 3 113172482 113172482 G C SPICE1 Missense_Mutation p.T658R 0.33 deleterious(0.04) possibly_damaging(0.89) TCGA-66-2800-01 3 113514756 113514756 A C ATP6V1A Silent p.P420P 0.62 TCGA-66-2800-01 3 113514757 113514757 G A ATP6V1A Missense_Mutation p.V421I 0.62 deleterious(0) possibly_damaging(0.788) TCGA-66-2800-01 3 125844456 125844456 C A ALDH1L1 Intron 0.09 TCGA-66-2800-01 3 1262456 1262456 C A CNTN6 Silent p.I47I 0.57 TCGA-66-2800-01 3 133485154 133485154 G T TF Missense_Mutation p.A455S 0.32 tolerated(0.12) benign(0.001) TCGA-66-2800-01 3 143567208 143567208 G A SLC9A9 5'UTR 0.34 TCGA-66-2800-01 3 154832874 154832874 C G MME Silent p.V96V 0.04 TCGA-66-2800-01 3 167422680 167422680 C A PDCD10 Nonsense_Mutation p.E34* 0.11 TCGA-66-2800-01 3 17279903 17279903 G C TBC1D5 Missense_Mutation p.A447G 0.60 tolerated(0.16) benign(0.06) TCGA-66-2800-01 3 179051102 179051102 C T ZNF639 Missense_Mutation p.P117L 0.27 deleterious(0) probably_damaging(0.997) TCGA-66-2800-01 3 19190249 19190249 C T KCNH8 Missense_Mutation p.T13I 0.66 deleterious(0.01) possibly_damaging(0.844) TCGA-66-2800-01 3 194080189 194080189 G C LRRC15 Missense_Mutation p.S534R 0.26 tolerated(0.11) benign(0.004) TCGA-66-2800-01 3 26751352 26751352 T A LRRC3B Silent p.P63P 0.59 TCGA-66-2800-01 3 55922517 55922517 G A ERC2 Missense_Mutation p.R822C 0.08 deleterious(0) probably_damaging(0.953) TCGA-66-2800-01 3 57542759 57542759 C T PDE12 Missense_Mutation p.P218L 0.27 tolerated(0.28) benign(0.002) TCGA-66-2800-01 3 57835536 57835536 A G SLMAP Missense_Mutation p.Y171C 0.50 deleterious(0.02) possibly_damaging(0.748) TCGA-66-2800-01 4 113554358 113554358 C A C4orf21 5'UTR 0.31 TCGA-66-2800-01 4 158142141 158142141 G C GRIA2 5'UTR 0.15 TCGA-66-2800-01 4 16037384 16037384 G T PROM1 Missense_Mutation p.P93T 0.22 deleterious(0.01) probably_damaging(0.984) TCGA-66-2800-01 4 177113858 177113858 A G SPATA4 Missense_Mutation p.M203T 0.22 tolerated(0.26) benign(0.005) TCGA-66-2800-01 4 37592256 37592256 C A C4orf19 Silent p.G193G 0.42 TCGA-66-2800-01 4 41984871 41984871 C A DCAF4L1 Silent p.S354S 0.30 TCGA-66-2800-01 4 42403075 42403075 G T SHISA3 Silent p.A108A 0.32 TCGA-66-2800-01 4 43022436 43022436 G C GRXCR1 Missense_Mutation p.E231D 0.18 tolerated(0.07) probably_damaging(0.978) TCGA-66-2800-01 4 71063746 71063746 T G ODAM Missense_Mutation p.F83V 0.14 tolerated(0.06) benign(0.018) TCGA-66-2800-01 4 81207593 81207593 C A FGF5 Missense_Mutation p.L192M 0.74 deleterious(0) probably_damaging(1) TCGA-66-2800-01 4 8229064 8229064 G T SH3TC1 Missense_Mutation p.G548V 0.32 tolerated(0.08) probably_damaging(0.932) TCGA-66-2800-01 4 89591400 89591400 G T HERC3 Silent p.G636G 0.33 TCGA-66-2800-01 5 112164609 112164609 G C APC Missense_Mutation p.K561N 0.09 benign(0.109) TCGA-66-2800-01 5 112720749 112720749 G A MCC Missense_Mutation p.L111F 0.07 tolerated_low_confidence(0.2) probably_damaging(0.986) TCGA-66-2800-01 5 140175108 140175108 G A PCDHA2 Missense_Mutation p.E187K 0.07 tolerated_low_confidence(0.18) benign(0.003) TCGA-66-2800-01 5 140209869 140209869 G T PCDHA6 Silent p.A731A 0.14 TCGA-66-2800-01 5 141335730 141335730 G T PCDH12 Missense_Mutation p.P563T 0.46 deleterious(0) probably_damaging(1) TCGA-66-2800-01 5 14678872 14678872 G T FAM105B Silent p.T104T 0.31 TCGA-66-2800-01 5 17354169 17354169 G A CTD-2139B15.2 Intron 0.28 TCGA-66-2800-01 5 22143165 22143165 T G CDH12 Intron 0.27 TCGA-66-2800-01 5 45261995 45261995 T A HCN1 3'UTR 0.51 TCGA-66-2800-01 5 56558513 56558513 A T GPBP1 Missense_Mutation p.K459N 0.59 deleterious(0.01) benign(0.156) TCGA-66-2800-01 5 7826899 7826899 A G ADCY2 Missense_Mutation p.N1064S 0.47 tolerated(0.09) benign(0.175) TCGA-66-2800-01 6 100838774 100838774 G T SIM1 Silent p.P588P 0.22 TCGA-66-2800-01 6 101054613 101054613 T A ASCC3 Intron 0.21 TCGA-66-2800-01 6 119525941 119525941 G C MAN1A1 Missense_Mutation p.P367A 0.41 deleterious(0.05) benign(0.006) TCGA-66-2800-01 6 134210895 134210895 G T TCF21 Silent p.T120T 0.42 TCGA-66-2800-01 6 136926462 136926462 G C MAP3K5 Missense_Mutation p.P855R 0.49 deleterious(0) probably_damaging(1) TCGA-66-2800-01 6 150322227 150322227 A G RAET1K RNA 0.22 TCGA-66-2800-01 6 160189618 160189618 G - ACAT2 Frame_Shift_Del p.G150Vfs*18 0.14 TCGA-66-2800-01 6 28294622 28294622 C T ZSCAN31 Missense_Mutation p.S181N 0.24 tolerated(0.5) benign(0.01) TCGA-66-2800-01 6 31556856 31556856 G A NCR3 Silent p.V198V 0.15 TCGA-66-2800-01 6 42214277 42214277 C A TRERF1 Missense_Mutation p.D888Y 0.25 deleterious(0) possibly_damaging(0.861) TCGA-66-2800-01 6 46803248 46803248 C T MEP1A Silent p.D682D 0.88 TCGA-66-2800-01 6 51774096 51774096 C A PKHD1 Missense_Mutation p.V2223L 0.20 tolerated(0.23) benign(0.153) TCGA-66-2800-01 6 51924782 51924782 G A PKHD1 Nonsense_Mutation p.Q393* 0.29 TCGA-66-2800-01 6 56482017 56482017 C A DST Intron 0.38 TCGA-66-2800-01 7 100361796 100361796 C A ZAN Missense_Mutation p.P1415H 0.38 unknown(0) TCGA-66-2800-01 7 102108810 102108810 C T LRWD1 Missense_Mutation p.P302L 0.12 deleterious(0) probably_damaging(0.999) TCGA-66-2800-01 7 106513331 106513331 C A PIK3CG Silent p.V745V 0.39 TCGA-66-2800-01 7 117432611 117432611 G A CTTNBP2 Silent p.L213L 0.44 TCGA-66-2800-01 7 141427419 141427419 C A WEE2 Intron 0.60 TCGA-66-2800-01 7 141672606 141672606 G T TAS2R38 Missense_Mutation p.A295D 0.35 deleterious(0.01) probably_damaging(0.948) TCGA-66-2800-01 7 149431068 149431068 G C KRBA1 Missense_Mutation p.V1008L 0.50 tolerated(0.49) possibly_damaging(0.893) TCGA-66-2800-01 7 20698286 20698286 C G ABCB5 Missense_Mutation p.A565G 0.31 deleterious(0.04) possibly_damaging(0.836) TCGA-66-2800-01 7 2649882 2649884 AGA - IQCE 3'UTR 0.17 TCGA-66-2800-01 7 29928944 29928944 G A WIPF3 Silent p.T424T 0.27 TCGA-66-2800-01 7 31792969 31792969 C T PDE1C 3'UTR 0.07 TCGA-66-2800-01 7 35289660 35289660 C A TBX20 Nonsense_Mutation p.E95* 0.28 TCGA-66-2800-01 7 42005053 42005053 C A GLI3 Missense_Mutation p.R1206S 0.38 tolerated_low_confidence(0.17) benign(0.146) TCGA-66-2800-01 7 44040648 44040648 C A SPDYE1 Silent p.A8A 0.34 TCGA-66-2800-01 7 92761600 92761600 C G SAMD9L Missense_Mutation p.V1229L 0.32 tolerated(0.78) benign(0.008) TCGA-66-2800-01 7 99170395 99170395 C T ZNF655 Missense_Mutation p.H257Y 0.19 tolerated(0.21) benign(0.291) TCGA-66-2800-01 7 99221744 99221744 C T ZSCAN25 Missense_Mutation p.P249L 0.36 tolerated(0.12) probably_damaging(0.997) TCGA-66-2800-01 8 113301698 113301698 G A CSMD3 Missense_Mutation p.S3015F 0.43 deleterious(0) probably_damaging(0.992) TCGA-66-2800-01 8 123964939 123964939 G A ZHX2 Missense_Mutation p.V397M 0.16 tolerated(0.07) benign(0.073) TCGA-66-2800-01 8 132051973 132051973 G A ADCY8 Silent p.L203L 0.36 TCGA-66-2800-01 8 135613997 135613997 C A ZFAT Silent p.G655G 0.35 TCGA-66-2800-01 8 139151265 139151265 G C FAM135B Missense_Mutation p.R1289G 0.27 deleterious(0) probably_damaging(0.999) TCGA-66-2800-01 8 1882037 1882037 A T ARHGEF10 Missense_Mutation p.M1051L 0.63 tolerated(1) benign(0.008) TCGA-66-2800-01 8 27646495 27646495 G A ESCO2 Silent p.V421V 0.45 TCGA-66-2800-01 8 33230216 33230216 C A FUT10 Missense_Mutation p.R440L 0.51 tolerated(0.24) benign(0.04) TCGA-66-2800-01 8 49832654 49832654 C T SNAI2 Silent p.G142G 0.37 TCGA-66-2800-01 8 62430122 62430122 C T ASPH Silent p.K697K 0.39 TCGA-66-2800-01 8 67753278 67753278 A G SGK3 Missense_Mutation p.D304G 0.13 deleterious(0) probably_damaging(0.948) TCGA-66-2800-01 8 87229738 87229738 C A SLC7A13 Missense_Mutation p.R380S 0.32 deleterious(0.03) benign(0.011) TCGA-66-2800-01 9 101984110 101984110 C A ALG2 Missense_Mutation p.D23Y 0.24 deleterious(0) probably_damaging(0.998) TCGA-66-2800-01 9 114246723 114246723 G A KIAA0368 Missense_Mutation p.R64W 0.39 deleterious_low_confidence(0) unknown(0) TCGA-66-2800-01 9 131019253 131019253 G A GOLGA2 3'UTR 0.18 TCGA-66-2800-01 9 21217288 21217288 G C IFNA16 Missense_Mutation p.S6C 0.29 deleterious(0.01) benign(0.087) TCGA-66-2800-01 9 21384611 21384611 A G IFNA2 3'UTR 0.75 TCGA-66-2800-01 9 38396346 38396346 G A ALDH1B1 Missense_Mutation p.A201T 0.03 deleterious(0.02) benign(0.227) TCGA-66-2800-01 X 102632595 102632595 G C NGFRAP1 Missense_Mutation p.G59A 0.64 tolerated(0.8) benign(0.052) TCGA-66-2800-01 X 102632596 102632596 G C NGFRAP1 Silent p.G59G 0.64 TCGA-66-2800-01 X 131206391 131206391 T C MST4 Splice_Site p.X342_splice 0.72 TCGA-66-2800-01 X 137791014 137791014 G C FGF13 Silent p.T98T 0.69 TCGA-66-2800-01 X 139865876 139865876 C G CDR1 Missense_Mutation p.G219A 0.03 tolerated(0.16) possibly_damaging(0.899) TCGA-66-2800-01 X 140996561 140996561 C A MAGEC1 Nonsense_Mutation p.S1124* 0.74 TCGA-66-2800-01 X 14550411 14550411 A T GLRA2 Missense_Mutation p.Q40L 0.66 tolerated(0.28) benign(0.002) TCGA-66-2800-01 X 151996238 151996238 C A CETN2 3'UTR 0.67 TCGA-66-2800-01 X 17820021 17820021 G T RAI2 Missense_Mutation p.A37D 0.68 deleterious(0) probably_damaging(0.994) TCGA-66-2800-01 X 20030581 20030581 T C MAP7D2 Missense_Mutation p.D653G 0.67 deleterious(0.01) unknown(0) TCGA-66-2800-01 X 20034289 20034289 G A MAP7D2 Missense_Mutation p.R523W 0.56 deleterious(0.01) unknown(0) TCGA-66-2800-01 X 53659447 53659447 C T HUWE1 Missense_Mutation p.E213K 0.70 benign(0.069) TCGA-66-2800-01 X 83319290 83319290 G A RPS6KA6 Silent p.L745L 0.19 TCGA-68-7755-01 10 101841221 101841221 G T CPN1 Missense_Mutation p.S54R 0.32 deleterious(0) probably_damaging(1) TCGA-68-7755-01 10 118084493 118084493 G A CCDC172 5'UTR 0.38 TCGA-68-7755-01 10 129903799 129903799 G A MKI67 Missense_Mutation p.A2102V 0.35 deleterious(0.04) benign(0.096) TCGA-68-7755-01 10 49388885 49388885 C A FRMPD2 Silent p.V917V 0.53 TCGA-68-7755-01 10 50820230 50820230 C A SLC18A3 Missense_Mutation p.R482S 0.17 tolerated(0.16) benign(0.424) TCGA-68-7755-01 10 50944184 50944184 C A OGDHL Nonsense_Mutation p.E932* 0.55 TCGA-68-7755-01 10 55782858 55782858 C A PCDH15 Missense_Mutation p.A774S 0.37 tolerated(0.23) benign(0.034) TCGA-68-7755-01 10 6139130 6139130 G A RBM17 Silent p.K34K 0.46 TCGA-68-7755-01 10 64414656 64414656 C A ZNF365 Intron 0.23 TCGA-68-7755-01 10 76790553 76790553 G A KAT6B Missense_Mutation p.A1991T 0.27 probably_damaging(0.995) TCGA-68-7755-01 10 7769036 7769036 G C ITIH2 Missense_Mutation p.V370L 0.39 tolerated(1) benign(0.007) TCGA-68-7755-01 10 88768195 88768195 C A RP11-96C23.10 3'Flank 0.51 TCGA-68-7755-01 10 96018827 96018827 A G PLCE1 Missense_Mutation p.N1245S 0.14 tolerated(0.67) benign(0.002) TCGA-68-7755-01 10 96971781 96971781 C A C10orf129 Missense_Mutation p.T301N 0.40 deleterious(0.04) benign(0.205) TCGA-68-7755-01 11 104972137 104972137 G T CARD17 Missense_Mutation p.A2D 0.34 deleterious(0) probably_damaging(0.917) TCGA-68-7755-01 11 108199909 108199909 G T ATM Silent p.L2417L 0.40 TCGA-68-7755-01 11 111745873 111745873 A G FDXACB1 Missense_Mutation p.F550L 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-68-7755-01 11 118106251 118106251 G A MPZL3 Missense_Mutation p.P169S 0.36 deleterious(0) probably_damaging(1) TCGA-68-7755-01 11 123513226 123513226 C - SCN3B Frame_Shift_Del p.E125Sfs*11 0.24 TCGA-68-7755-01 11 123886685 123886685 T A OR10G4 Missense_Mutation p.M135K 0.07 deleterious(0) possibly_damaging(0.811) TCGA-68-7755-01 11 123894123 123894123 T A OR10G9 Missense_Mutation p.M135K 0.32 deleterious(0) possibly_damaging(0.811) TCGA-68-7755-01 11 132177658 132177658 G A NTM Missense_Mutation p.C201Y 0.32 deleterious(0) probably_damaging(1) TCGA-68-7755-01 11 22281279 22281279 C G ANO5 Missense_Mutation p.T541R 0.33 deleterious(0) probably_damaging(0.992) TCGA-68-7755-01 11 22647280 22647280 C T FANCF Nonsense_Mutation p.W26* 0.19 TCGA-68-7755-01 11 25071637 25071637 G T LUZP2 Missense_Mutation p.K273N 0.29 deleterious(0) possibly_damaging(0.624) TCGA-68-7755-01 11 36614763 36614763 C T RAG2 Missense_Mutation p.G319E 0.34 deleterious(0.01) probably_damaging(1) TCGA-68-7755-01 11 47358956 47358956 G A MYBPC3 Missense_Mutation p.P863L 0.43 deleterious(0) possibly_damaging(0.901) TCGA-68-7755-01 11 55135595 55135595 C T OR4A15 Missense_Mutation p.A79V 0.35 tolerated_low_confidence(0.71) benign(0.007) TCGA-68-7755-01 11 55432631 55432631 A G OR4C6 5'UTR 0.33 TCGA-68-7755-01 11 55541234 55541234 C A OR5D13 Nonsense_Mutation p.C107* 0.31 TCGA-68-7755-01 11 55761630 55761630 C - OR5F1 Frame_Shift_Del p.V158Sfs*37 0.26 TCGA-68-7755-01 11 55926886 55926886 T - OR8K5 Frame_Shift_Del p.K303Sfs*? 0.29 TCGA-68-7755-01 11 56086075 56086075 C A OR8K3 Missense_Mutation p.A98E 0.32 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-68-7755-01 11 56230590 56230590 C A OR5M9 Missense_Mutation p.L96F 0.35 tolerated(0.64) benign(0.027) TCGA-68-7755-01 11 5717752 5717752 G T TRIM22 Missense_Mutation p.C97F 0.19 deleterious(0) probably_damaging(1) TCGA-68-7755-01 11 5719644 5719644 G T TRIM22 Nonsense_Mutation p.E207* 0.62 TCGA-68-7755-01 11 57995395 57995395 G A OR10Q1 Missense_Mutation p.A318V 0.38 tolerated_low_confidence(0.12) benign(0.001) TCGA-68-7755-01 11 58189947 58189947 C A OR5B2 Missense_Mutation p.S263I 0.38 deleterious_low_confidence(0) benign(0.371) TCGA-68-7755-01 11 60160164 60160164 C A MS4A7 Missense_Mutation p.L185I 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-68-7755-01 11 60183488 60183488 T G MS4A14 Missense_Mutation p.N382K 0.18 tolerated(0.22) benign(0.013) TCGA-68-7755-01 11 63656382 63656382 T A MARK2 Intron 0.29 TCGA-68-7755-01 11 64532803 64532803 T C SF1 3'UTR 0.37 TCGA-68-7755-01 11 64670821 64670821 A T ATG2A Nonsense_Mutation p.L1184* 0.37 TCGA-68-7755-01 11 77412740 77412740 C A RSF1 Missense_Mutation p.D512Y 0.38 deleterious_low_confidence(0.05) benign(0.003) TCGA-68-7755-01 11 9435905 9435905 C T IPO7 Nonsense_Mutation p.Q195* 0.38 TCGA-68-7755-01 12 132380165 132380165 C A ULK1 Missense_Mutation p.A44D 0.14 deleterious(0) probably_damaging(0.999) TCGA-68-7755-01 12 19436576 19436576 A C PLEKHA5 Missense_Mutation p.Y559S 0.38 tolerated(0.06) possibly_damaging(0.467) TCGA-68-7755-01 12 21970227 21970227 C G ABCC9 Missense_Mutation p.L1262F 0.34 deleterious(0) possibly_damaging(0.758) TCGA-68-7755-01 12 32832366 32832366 C T DNM1L Silent p.I23I 0.17 TCGA-68-7755-01 12 44148687 44148687 T A PUS7L Missense_Mutation p.K121I 0.33 tolerated(0.15) benign(0.052) TCGA-68-7755-01 12 49420938 49420938 G - KMT2D Frame_Shift_Del p.T4938Pfs*57 0.32 TCGA-68-7755-01 12 55354982 55354982 G T TESPA1 Missense_Mutation p.H513N 0.38 deleterious_low_confidence(0.04) benign(0.014) TCGA-68-7755-01 12 56994465 56994465 C A BAZ2A Silent p.R1536R 0.32 TCGA-68-7755-01 12 71029638 71029638 G A PTPRB Silent p.S88S 0.36 TCGA-68-7755-01 12 78513468 78513468 C A NAV3 Silent p.S1164S 0.11 TCGA-68-7755-01 12 82792925 82792925 A T METTL25 Missense_Mutation p.T295S 0.30 tolerated(0.5) benign(0.011) TCGA-68-7755-01 12 9907052 9907052 C A CD69 Intron 0.44 TCGA-68-7755-01 13 23907382 23907382 C G SACS Missense_Mutation p.V3545L 0.73 probably_damaging(0.978) TCGA-68-7755-01 13 35632889 35632889 T A NBEA Silent p.T376T 0.70 TCGA-68-7755-01 13 39264749 39264749 A G FREM2 Missense_Mutation p.I1090V 0.69 tolerated(0.05) benign(0.001) TCGA-68-7755-01 13 46549583 46549583 C T ZC3H13 Missense_Mutation p.R768Q 0.69 unknown(0) TCGA-68-7755-01 13 61102800 61102800 A G TDRD3 Missense_Mutation p.K481E 0.70 tolerated(0.12) possibly_damaging(0.693) TCGA-68-7755-01 13 67800544 67800544 A T PCDH9 Missense_Mutation p.S677T 0.71 tolerated(1) benign(0.013) TCGA-68-7755-01 14 23884470 23884470 T A MYH7 Missense_Mutation p.M1765L 0.34 tolerated(0.13) benign(0.389) TCGA-68-7755-01 14 23884471 23884471 C T MYH7 Missense_Mutation p.M1764I 0.34 tolerated(0.07) possibly_damaging(0.769) TCGA-68-7755-01 14 24657963 24657963 G T IPO4 Silent p.R11R 0.24 TCGA-68-7755-01 14 39716277 39716277 G T MIA2 Missense_Mutation p.A167S 0.33 tolerated(1) benign(0.01) TCGA-68-7755-01 14 47504484 47504484 G T MDGA2 Missense_Mutation p.Q517K 0.19 tolerated(1) benign(0.005) TCGA-68-7755-01 14 53150539 53150539 T C ERO1L Silent p.K67K 0.43 TCGA-68-7755-01 14 68126538 68126538 A G VTI1B Silent p.H92H 0.43 TCGA-68-7755-01 14 69259623 69259623 G C ZFP36L1 Missense_Mutation p.F11L 0.05 tolerated(0.23) benign(0.331) TCGA-68-7755-01 14 75498786 75498786 T C MLH3 Missense_Mutation p.Q1271R 0.37 deleterious(0) probably_damaging(0.983) TCGA-68-7755-01 14 76964666 76964666 G A ESRRB Silent p.T389T 0.30 TCGA-68-7755-01 14 88895751 88895751 G T SPATA7 Silent p.G324G 0.27 TCGA-68-7755-01 14 89109354 89109354 C G EML5 Missense_Mutation p.E1374Q 0.14 tolerated(0.11) benign(0.124) TCGA-68-7755-01 14 92074688 92074688 G T CATSPERB Missense_Mutation p.H887N 0.35 tolerated(0.6) benign(0.012) TCGA-68-7755-01 15 102192557 102192557 C T TM2D3 Missense_Mutation p.G3E 0.54 deleterious_low_confidence(0.02) benign(0.013) TCGA-68-7755-01 15 20658646 20658646 G C HERC2P3 RNA 0.15 TCGA-68-7755-01 15 25496057 25496057 A C SNORD115-44 RNA 0.19 TCGA-68-7755-01 15 25926029 25926029 G T ATP10A Silent p.T1202T 0.25 TCGA-68-7755-01 15 25969148 25969148 G T ATP10A Silent p.R334R 0.32 TCGA-68-7755-01 15 34072543 34072543 G T RYR3 Splice_Site p.X3090_splice 0.52 TCGA-68-7755-01 15 41771373 41771373 G C RTF1 Missense_Mutation p.D631H 0.44 tolerated(0.1) benign(0.19) TCGA-68-7755-01 15 41771395 41772409 15:41771395-41772409 - RTF1 large deletion p.X639_splice 0.32 TCGA-68-7755-01 15 41772495 41772495 G A RTF1 Silent p.V666V 0.46 TCGA-68-7755-01 15 41772502 41772502 G T RTF1 Missense_Mutation p.D669Y 0.43 deleterious(0) probably_damaging(0.999) TCGA-68-7755-01 15 43023432 43023432 C G CDAN1 Missense_Mutation p.G613R 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-68-7755-01 15 54916082 54916082 A C UNC13C Missense_Mutation p.K2097Q 0.19 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-68-7755-01 15 62994973 62994973 G C TLN2 Missense_Mutation p.Q638H 0.32 deleterious(0) possibly_damaging(0.709) TCGA-68-7755-01 15 64005813 64005813 C T HERC1 Missense_Mutation p.R1401Q 0.29 possibly_damaging(0.727) TCGA-68-7755-01 15 78770674 78770674 T C IREB2 Missense_Mutation p.Y411H 0.31 deleterious(0) probably_damaging(1) TCGA-68-7755-01 15 84581996 84581996 G C ADAMTSL3 Missense_Mutation p.R618P 0.39 deleterious(0) probably_damaging(0.991) TCGA-68-7755-01 15 90020784 90020784 G A RHCG Missense_Mutation p.A359V 0.45 tolerated(0.14) possibly_damaging(0.665) TCGA-68-7755-01 15 93482872 93482872 G A CHD2 Missense_Mutation p.D206N 0.38 tolerated(0.32) benign(0.013) TCGA-68-7755-01 16 1824279 1824279 G C EME2 Missense_Mutation p.A135P 0.41 deleterious(0.05) benign(0.055) TCGA-68-7755-01 16 21261616 21261617 - G ANKS4B Frame_Shift_Ins p.D245Gfs*19 0.31 TCGA-68-7755-01 16 23555835 23555835 C T EARS2 Missense_Mutation p.R162Q 0.28 deleterious(0) probably_damaging(1) TCGA-68-7755-01 16 27765552 27765552 C G KIAA0556 Missense_Mutation p.P1204R 0.30 deleterious(0.03) probably_damaging(0.995) TCGA-68-7755-01 16 3339669 3339670 - T ZNF263 Frame_Shift_Ins p.N389* 0.25 TCGA-68-7755-01 16 53686497 53686497 T A RPGRIP1L Missense_Mutation p.H701L 0.32 deleterious(0.01) benign(0.268) TCGA-68-7755-01 16 632279 632279 G T PIGQ Intron 0.45 TCGA-68-7755-01 16 65022083 65022083 C A CDH11 Nonsense_Mutation p.E326* 0.34 TCGA-68-7755-01 16 727082 727082 G T RHBDL1 Missense_Mutation p.A245S 0.34 deleterious(0.01) possibly_damaging(0.826) TCGA-68-7755-01 16 75204221 75204221 G C ZFP1 Missense_Mutation p.E405Q 0.55 deleterious(0.03) benign(0.079) TCGA-68-7755-01 16 78149053 78149053 T C WWOX Splice_Site p.X137_splice 0.15 TCGA-68-7755-01 16 90002138 90002138 G A TUBB3 Missense_Mutation p.D427N 0.41 tolerated_low_confidence(0.08) unknown(0) TCGA-68-7755-01 17 11607633 11607633 C T DNAH9 Silent p.A1755A 0.73 TCGA-68-7755-01 17 12011144 12011144 C T MAP2K4 Missense_Mutation p.S184L 0.80 deleterious(0) probably_damaging(1) TCGA-68-7755-01 17 1633695 1633695 G A WDR81 Missense_Mutation p.R1230H 0.08 tolerated(0.07) probably_damaging(1) TCGA-68-7755-01 17 30660437 30660441 TTTAG - C17orf75 Frame_Shift_Del p.L324Gfs*24 0.20 TCGA-68-7755-01 17 3300850 3300850 C T OR1E1 Silent p.L285L 0.67 TCGA-68-7755-01 17 33749918 33749918 C T SLFN12 Missense_Mutation p.V44I 0.12 tolerated(1) benign(0.003) TCGA-68-7755-01 17 44060888 44060888 G A MAPT Missense_Mutation p.A240T 0.39 tolerated(0.59) benign(0.007) TCGA-68-7755-01 17 45885647 45885647 G A OSBPL7 3'UTR 0.17 TCGA-68-7755-01 17 46804330 46804330 C A HOXB13 Missense_Mutation p.G226V 0.54 tolerated(1) possibly_damaging(0.642) TCGA-68-7755-01 17 78199710 78199710 G T SLC26A11 Missense_Mutation p.E196D 0.15 tolerated(0.09) benign(0.029) TCGA-68-7755-01 18 29788198 29788198 C G MEP1B Missense_Mutation p.P295A 0.33 deleterious(0.04) probably_damaging(1) TCGA-68-7755-01 18 47810112 47810112 C A CXXC1 Missense_Mutation p.R500L 0.28 deleterious(0.01) benign(0.099) TCGA-68-7755-01 18 6898561 6898561 C T ARHGAP28 Intron 0.08 TCGA-68-7755-01 18 74074480 74074480 C A ZNF516 Missense_Mutation p.Q1155H 0.25 tolerated(1) benign(0.365) TCGA-68-7755-01 19 14991849 14991849 A G OR7A17 Missense_Mutation p.F107L 0.43 deleterious_low_confidence(0.01) benign(0.053) TCGA-68-7755-01 19 16910915 16910915 C T NWD1 Silent p.Y1226Y 0.37 TCGA-68-7755-01 19 16980441 16980441 G T SIN3B Silent p.L691L 0.47 TCGA-68-7755-01 19 21239499 21239499 G A ZNF430 Missense_Mutation p.E129K 0.34 tolerated(1) benign(0.004) TCGA-68-7755-01 19 21608646 21608646 G C ZNF493 3'UTR 0.25 TCGA-68-7755-01 19 24270017 24270017 C T ZNF254 5'UTR 0.42 TCGA-68-7755-01 19 32973210 32973210 G C DPY19L3 3'UTR 0.47 TCGA-68-7755-01 19 33134532 33134532 T G ANKRD27 Silent p.S177S 0.28 TCGA-68-7755-01 19 39322401 39322401 C A ECH1 Silent p.G4G 0.40 TCGA-68-7755-01 19 43269728 43269728 C A PSG8 Silent p.G2G 0.39 TCGA-68-7755-01 19 50203965 50203965 G T CPT1C Silent p.R102R 0.52 TCGA-68-7755-01 19 51960779 51960779 G A SIGLEC8 Silent p.T223T 0.45 TCGA-68-7755-01 19 52327838 52327838 C A FPR3 Silent p.I279I 0.14 TCGA-68-7755-01 19 53303543 53303543 C G ZNF28 Missense_Mutation p.G519R 0.35 deleterious(0.04) probably_damaging(0.991) TCGA-68-7755-01 19 54314477 54314477 G A NLRP12 Missense_Mutation p.R146C 0.45 tolerated(0.06) probably_damaging(1) TCGA-68-7755-01 19 54969563 54969563 A T LENG8 Silent p.A701A 0.45 TCGA-68-7755-01 19 55044984 55044984 C A KIR3DX1 Missense_Mutation p.P35Q 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-68-7755-01 19 55255273 55255273 A T KIR2DL3 Missense_Mutation p.Q134L 0.41 tolerated(0.13) possibly_damaging(0.522) TCGA-68-7755-01 19 56363629 56363629 G T NLRP4 Missense_Mutation p.K61N 0.20 deleterious(0) probably_damaging(0.962) TCGA-68-7755-01 19 56393033 56393033 G A NLRP4 3'UTR 0.34 TCGA-68-7755-01 19 58371464 58371464 A T ZNF587 Missense_Mutation p.T562S 0.18 tolerated(1) benign(0.003) TCGA-68-7755-01 19 58598712 58598712 C T ZSCAN18 Missense_Mutation p.E261K 0.50 tolerated(0.11) benign(0.096) TCGA-68-7755-01 19 59067738 59067738 C T UBE2M Nonsense_Mutation p.W119* 0.23 TCGA-68-7755-01 19 6712355 6712355 C T C3 Silent p.E394E 0.31 TCGA-68-7755-01 19 7619582 7619582 G - PNPLA6 Frame_Shift_Del p.D881Tfs*24 0.34 TCGA-68-7755-01 19 7808071 7808071 C T CD209 Missense_Mutation p.A357T 0.38 deleterious(0.04) benign(0.08) TCGA-68-7755-01 19 8971782 8971784 GGA - MUC16 In_Frame_Del p.S14270del 0.33 TCGA-68-7755-01 19 9056192 9056192 T A MUC16 Silent p.S10418S 0.38 TCGA-68-7755-01 19 9085675 9085675 G T MUC16 Missense_Mutation p.A2047E 0.34 unknown(0) TCGA-68-7755-01 1 103440405 103440405 G T COL11A1 Missense_Mutation p.P930H 0.56 unknown(0) TCGA-68-7755-01 1 103440406 103440406 G T COL11A1 Missense_Mutation p.P930T 0.55 unknown(0) TCGA-68-7755-01 1 111773503 111773503 G A CHI3L2 Silent p.K70K 0.24 TCGA-68-7755-01 1 114184908 114184908 T A MAGI3 Missense_Mutation p.I579N 0.51 deleterious(0) probably_damaging(0.947) TCGA-68-7755-01 1 149884991 149884991 C A SV2A Silent p.G134G 0.52 TCGA-68-7755-01 1 154744540 154744540 C T KCNN3 Silent p.T453T 0.11 TCGA-68-7755-01 1 155408653 155408653 G T ASH1L Missense_Mutation p.L1765I 0.19 deleterious_low_confidence(0.04) possibly_damaging(0.458) TCGA-68-7755-01 1 158612734 158612734 T A SPTA1 Missense_Mutation p.E1492V 0.21 deleterious(0.01) probably_damaging(1) TCGA-68-7755-01 1 176563857 176563857 G T PAPPA2 Nonsense_Mutation p.G373* 0.31 TCGA-68-7755-01 1 179399610 179399610 G T AXDND1 Missense_Mutation p.L452F 0.38 deleterious(0) possibly_damaging(0.86) TCGA-68-7755-01 1 179632538 179632538 G T TDRD5 Missense_Mutation p.G854V 0.15 deleterious(0) possibly_damaging(0.586) TCGA-68-7755-01 1 181701993 181701993 G T CACNA1E Missense_Mutation p.R924L 0.17 deleterious(0.03) benign(0.25) TCGA-68-7755-01 1 192153567 192153567 C T RGS18 Silent p.I197I 0.17 TCGA-68-7755-01 1 197021844 197021844 A G F13B Missense_Mutation p.L492S 0.47 tolerated(0.06) benign(0.128) TCGA-68-7755-01 1 200817737 200817737 G C CAMSAP2 Missense_Mutation p.V614L 0.44 tolerated(0.13) probably_damaging(0.925) TCGA-68-7755-01 1 20248851 20248851 C T PLA2G2E Missense_Mutation p.G76S 0.73 tolerated(0.07) possibly_damaging(0.839) TCGA-68-7755-01 1 202742325 202742325 G A KDM5B Missense_Mutation p.A166V 0.46 tolerated(0.07) probably_damaging(0.923) TCGA-68-7755-01 1 207647196 207647196 C G CR2 Missense_Mutation p.R736G 0.44 tolerated(0.19) benign(0.365) TCGA-68-7755-01 1 212798867 212798867 G T FAM71A Missense_Mutation p.Q216H 0.21 tolerated(0.05) possibly_damaging(0.708) TCGA-68-7755-01 1 215960057 215960057 C A USH2A Nonsense_Mutation p.E3448* 0.21 TCGA-68-7755-01 1 230468731 230468731 G T PGBD5 Missense_Mutation p.L309M 0.64 tolerated(0.11) possibly_damaging(0.447) TCGA-68-7755-01 1 236899008 236899008 G A ACTN2 Silent p.A257A 0.41 TCGA-68-7755-01 1 237659930 237659930 G T RYR2 Missense_Mutation p.R694L 0.52 probably_damaging(0.999) TCGA-68-7755-01 1 238090426 238090426 G A RP11-193H5.1 RNA 0.08 TCGA-68-7755-01 1 248366667 248366667 C G OR2M3 Missense_Mutation p.Q100E 0.18 deleterious(0.04) benign(0.144) TCGA-68-7755-01 1 248569851 248569851 A T OR2T1 Missense_Mutation p.M186L 0.39 deleterious(0.01) benign(0.012) TCGA-68-7755-01 1 36933561 36933561 C G CSF3R Missense_Mutation p.A576P 0.50 deleterious(0.01) benign(0.385) TCGA-68-7755-01 1 48694696 48694696 T C SLC5A9 Intron 0.65 TCGA-68-7755-01 1 75622662 75622662 C T LHX8 Missense_Mutation p.P299S 0.54 tolerated(0.15) benign(0.018) TCGA-68-7755-01 20 1961065 1961065 C T PDYN Silent p.Q223Q 0.41 TCGA-68-7755-01 20 21689867 21689867 C T PAX1 Missense_Mutation p.S356F 0.28 deleterious_low_confidence(0.01) benign(0.032) TCGA-68-7755-01 20 23586456 23586456 G C CST9 Missense_Mutation p.L16V 0.42 deleterious(0.01) probably_damaging(0.992) TCGA-68-7755-01 20 34061237 34061237 G T CEP250 Silent p.V416V 0.48 TCGA-68-7755-01 20 37535621 37535621 G A PPP1R16B Splice_Site p.X275_splice 0.36 TCGA-68-7755-01 20 43703676 43703676 G T STK4 Silent p.V441V 0.42 TCGA-68-7755-01 20 57829701 57829701 T A ZNF831 Missense_Mutation p.L1646H 0.21 deleterious(0) possibly_damaging(0.533) TCGA-68-7755-01 20 61950534 61950534 C T COL20A1 Missense_Mutation p.L930F 0.22 deleterious(0.04) possibly_damaging(0.822) TCGA-68-7755-01 20 62071056 62071056 C T KCNQ2 Silent p.T274T 0.42 TCGA-68-7755-01 20 8709763 8709763 G T PLCB1 Missense_Mutation p.M610I 0.39 deleterious(0) possibly_damaging(0.573) TCGA-68-7755-01 21 19725330 19725330 C A TMPRSS15 Missense_Mutation p.C354F 0.19 deleterious(0) probably_damaging(1) TCGA-68-7755-01 22 21799235 21799235 G C HIC2 Silent p.G17G 0.26 TCGA-68-7755-01 22 24036093 24036093 C A RGL4 Missense_Mutation p.L282I 0.40 deleterious(0) probably_damaging(0.954) TCGA-68-7755-01 22 26709846 26709846 C A SEZ6L Silent p.R665R 0.34 TCGA-68-7755-01 22 31032572 31032572 C T SLC35E4 Silent p.G45G 0.25 TCGA-68-7755-01 22 31672829 31672829 A T LIMK2 Silent p.P588P 0.44 TCGA-68-7755-01 22 38028149 38028149 G A GGA1 Missense_Mutation p.V559M 0.10 tolerated(0.25) benign(0.015) TCGA-68-7755-01 22 39134194 39134194 T A SUN2 Missense_Mutation p.Q696L 0.26 deleterious(0) possibly_damaging(0.887) TCGA-68-7755-01 22 50893143 50893143 T C SBF1 Missense_Mutation p.N1614S 0.46 tolerated(0.6) benign(0.177) TCGA-68-7755-01 2 101089996 101089996 C A NMS Missense_Mutation p.P60T 0.29 tolerated(0.14) benign(0.1) TCGA-68-7755-01 2 113950884 113950884 C A PSD4 Silent p.R657R 0.24 TCGA-68-7755-01 2 130832736 130832736 G T POTEF Missense_Mutation p.P770H 0.31 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-68-7755-01 2 132241647 132241647 T A MZT2A Missense_Mutation p.Q155L 0.30 deleterious_low_confidence(0.01) benign(0.036) TCGA-68-7755-01 2 15319125 15319125 G A NBAS Missense_Mutation p.T2276M 0.26 tolerated(0.11) benign(0.444) TCGA-68-7755-01 2 155711604 155711604 A T KCNJ3 Missense_Mutation p.S429C 0.40 deleterious_low_confidence(0) possibly_damaging(0.798) TCGA-68-7755-01 2 15701404 15701404 C T NBAS Missense_Mutation p.A9T 0.22 tolerated_low_confidence(0.1) benign(0.002) TCGA-68-7755-01 2 158272324 158272324 G T CYTIP Silent p.P315P 0.32 TCGA-68-7755-01 2 168104757 168104757 T A XIRP2 Missense_Mutation p.S2285R 0.33 benign(0.057) TCGA-68-7755-01 2 170038125 170038125 G C LRP2 Nonsense_Mutation p.Y3334* 0.75 TCGA-68-7755-01 2 178098944 178098944 C G NFE2L2 Missense_Mutation p.R34P 0.70 deleterious(0) probably_damaging(1) TCGA-68-7755-01 2 179457617 179457617 T G TTN Missense_Mutation p.K19743N 0.20 TCGA-68-7755-01 2 179596474 179596474 G T TTN Silent p.R5710R 0.79 TCGA-68-7755-01 2 202591234 202591234 C A ALS2 Missense_Mutation p.G1074V 0.74 deleterious(0.02) probably_damaging(0.994) TCGA-68-7755-01 2 212288985 212288985 A T ERBB4 Missense_Mutation p.Y921N 0.59 deleterious(0) probably_damaging(0.999) TCGA-68-7755-01 2 216964991 216964991 G T TMEM169 Missense_Mutation p.C207F 0.66 deleterious(0) probably_damaging(1) TCGA-68-7755-01 2 227778952 227778952 G A RHBDD1 Silent p.P247P 0.51 TCGA-68-7755-01 2 228110642 228110642 T A COL4A3 Intron 0.50 TCGA-68-7755-01 2 234601821 234601821 A G UGT1A6 Silent p.V57V 0.55 TCGA-68-7755-01 2 241569629 241569629 C T GPR35 Missense_Mutation p.P118L 0.28 tolerated(0.77) benign(0.006) TCGA-68-7755-01 2 25497823 25497823 C G DNMT3A Missense_Mutation p.R209P 0.18 tolerated(0.24) possibly_damaging(0.689) TCGA-68-7755-01 2 27601338 27601338 A G ZNF513 Silent p.P265P 0.31 TCGA-68-7755-01 2 27729678 27729678 A C GCKR Missense_Mutation p.Y331S 0.34 tolerated(0.13) possibly_damaging(0.474) TCGA-68-7755-01 2 27822459 27822459 G T ZNF512 Missense_Mutation p.G96V 0.19 deleterious_low_confidence(0.02) benign(0.054) TCGA-68-7755-01 2 30379643 30379643 A T YPEL5 Silent p.A42A 0.19 TCGA-68-7755-01 2 58459248 58459248 C A FANCL Splice_Site p.X33_splice 0.30 TCGA-68-7755-01 2 77746099 77746099 G C LRRTM4 Missense_Mutation p.A299G 0.35 deleterious(0.02) possibly_damaging(0.702) TCGA-68-7755-01 2 86361980 86361980 G T PTCD3 Missense_Mutation p.D550Y 0.24 deleterious(0) probably_damaging(0.91) TCGA-68-7755-01 2 89265996 89265996 G T IGKV1-6 Silent p.R46R 0.51 TCGA-68-7755-01 3 101574259 101574259 G - NFKBIZ Frame_Shift_Del p.G538Efs*16 0.22 TCGA-68-7755-01 3 108391497 108391497 A G DZIP3 Silent p.T861T 0.43 TCGA-68-7755-01 3 108635025 108635025 G C GUCA1C Missense_Mutation p.P131A 0.56 tolerated(0.45) benign(0.002) TCGA-68-7755-01 3 108833252 108833252 G A MORC1 Missense_Mutation p.A33V 0.26 deleterious(0) probably_damaging(0.963) TCGA-68-7755-01 3 11356912 11356912 T G ATG7 Missense_Mutation p.V208G 0.50 tolerated(0.08) benign(0.03) TCGA-68-7755-01 3 121340549 121340549 C A FBXO40 Missense_Mutation p.S91R 0.54 deleterious(0) probably_damaging(0.999) TCGA-68-7755-01 3 122629773 122629773 G T SEMA5B Missense_Mutation p.L1125M 0.56 deleterious(0.01) possibly_damaging(0.894) TCGA-68-7755-01 3 130463888 130463888 C T PIK3R4 Missense_Mutation p.D59N 0.12 deleterious(0) probably_damaging(0.94) TCGA-68-7755-01 3 155493561 155493561 C A C3orf33 Missense_Mutation p.R41L 0.14 tolerated(0.08) benign(0.067) TCGA-68-7755-01 3 164710166 164710166 T A SI Missense_Mutation p.T1621S 0.24 deleterious(0.03) probably_damaging(0.961) TCGA-68-7755-01 3 164906821 164906821 G C SLITRK3 Missense_Mutation p.R600G 0.26 tolerated(0.22) benign(0.137) TCGA-68-7755-01 3 172052825 172052825 C T FNDC3B Missense_Mutation p.P578L 0.09 deleterious(0.03) possibly_damaging(0.781) TCGA-68-7755-01 3 185970905 185970905 G A DGKG Missense_Mutation p.A526V 0.67 deleterious(0) probably_damaging(1) TCGA-68-7755-01 3 189349330 189349330 C A TP63 Missense_Mutation p.A9D 0.72 tolerated_low_confidence(0.49) benign(0.003) TCGA-68-7755-01 3 196555243 196555243 G T PAK2 Missense_Mutation p.M514I 0.72 tolerated(0.43) benign(0) TCGA-68-7755-01 3 32745357 32745377 CAGATCAGGGAGCAGAGAAAC - CNOT10 Splice_Site p.X68_splice 0.48 TCGA-68-7755-01 3 46944114 46944114 G T PTH1R Missense_Mutation p.W437L 0.52 deleterious(0) probably_damaging(1) TCGA-68-7755-01 3 49412884 49412884 C T RHOA Missense_Mutation p.E47K 0.62 deleterious(0.04) possibly_damaging(0.846) TCGA-68-7755-01 3 51425210 51425210 A G MANF Missense_Mutation p.I89V 0.62 tolerated(0.15) benign(0.007) TCGA-68-7755-01 3 62267305 62267305 C T PTPRG Missense_Mutation p.T1278I 0.52 deleterious(0) probably_damaging(0.982) TCGA-68-7755-01 3 69105801 69105801 C T UBA3 Missense_Mutation p.D349N 0.62 tolerated(0.09) benign(0.01) TCGA-68-7755-01 3 93605180 93605180 C A PROS1 Silent p.P441P 0.63 TCGA-68-7755-01 3 96706536 96706536 G A EPHA6 Silent p.G271G 0.50 TCGA-68-7755-01 4 153250867 153250867 G T FBXW7 Missense_Mutation p.S398Y 0.62 deleterious(0) probably_damaging(1) TCGA-68-7755-01 4 187521213 187521213 T - FAT1 Frame_Shift_Del p.Y3981Ffs*2 0.43 TCGA-68-7755-01 4 24833247 24833247 A C CCDC149 Missense_Mutation p.H282Q 0.70 tolerated(0.15) benign(0.071) TCGA-68-7755-01 4 46305575 46305575 A T GABRA2 Missense_Mutation p.F253Y 0.51 deleterious(0.04) probably_damaging(0.999) TCGA-68-7755-01 4 7684579 7684579 G A SORCS2 Missense_Mutation p.S484N 0.28 tolerated(0.11) benign(0.022) TCGA-68-7755-01 4 77631427 77631427 C T SHROOM3 Missense_Mutation p.R148W 0.76 deleterious(0) probably_damaging(0.998) TCGA-68-7755-01 4 7802313 7802313 G A AFAP1 Silent p.L374L 0.34 TCGA-68-7755-01 5 10390544 10390544 G - MARCH6 Frame_Shift_Del p.G171Efs*88 0.30 TCGA-68-7755-01 5 10391722 10391722 C T MARCH6 Silent p.N215N 0.22 TCGA-68-7755-01 5 112090623 112090623 A G APC Silent p.Q12Q 0.44 TCGA-68-7755-01 5 123984688 123984688 C T ZNF608 Silent p.G463G 0.39 TCGA-68-7755-01 5 140559141 140559141 C G PCDHB8 Missense_Mutation p.T509R 0.52 deleterious_low_confidence(0) benign(0.022) TCGA-68-7755-01 5 140719003 140719003 G T PCDHGA2 Missense_Mutation p.K155N 0.54 tolerated_low_confidence(0.08) benign(0.096) TCGA-68-7755-01 5 140741116 140741116 G A PCDHGB2 Missense_Mutation p.A472T 0.23 tolerated(0.4) benign(0.229) TCGA-68-7755-01 5 156770035 156770035 C G FNDC9 Missense_Mutation p.Q170H 0.32 tolerated(0.56) probably_damaging(0.912) TCGA-68-7755-01 5 174869993 174869993 G A DRD1 Missense_Mutation p.T37M 0.17 deleterious(0) probably_damaging(0.999) TCGA-68-7755-01 5 26885778 26885778 G A CDH9 Silent p.A609A 0.33 TCGA-68-7755-01 5 33954604 33954605 GC - SLC45A2 Frame_Shift_Del p.R298Qfs*55 0.24 TCGA-68-7755-01 5 38406232 38406232 T A EGFLAM Silent p.P239P 0.16 TCGA-68-7755-01 5 38950037 38950037 C A RICTOR Missense_Mutation p.A1305S 0.31 tolerated(1) benign(0.034) TCGA-68-7755-01 5 42695055 42695055 C T GHR Silent p.C101C 0.41 TCGA-68-7755-01 5 76342481 76342481 G A AGGF1 Missense_Mutation p.A394T 0.33 tolerated(0.12) benign(0.013) TCGA-68-7755-01 5 98238653 98238653 C T CHD1 Missense_Mutation p.E130K 0.35 tolerated_low_confidence(0.3) benign(0.013) TCGA-68-7755-01 6 129781451 129781451 G T LAMA2 Missense_Mutation p.C2325F 0.21 deleterious(0) probably_damaging(0.999) TCGA-68-7755-01 6 131199280 131199280 T C EPB41L2 Silent p.K669K 0.38 TCGA-68-7755-01 6 133789883 133789883 C T EYA4 Intron 0.53 TCGA-68-7755-01 6 146264921 146264921 C T SHPRH Silent p.R532R 0.49 TCGA-68-7755-01 6 152665342 152665342 G T SYNE1 Missense_Mutation p.H4033Q 0.27 benign(0.141) TCGA-68-7755-01 6 153073361 153073361 A C VIP Missense_Mutation p.S17R 0.25 tolerated(0.06) possibly_damaging(0.462) TCGA-68-7755-01 6 167570926 167570926 G A GPR31 Silent p.L132L 0.56 TCGA-68-7755-01 6 167728948 167728948 G T UNC93A 3'UTR 0.15 TCGA-68-7755-01 6 28333553 28333553 T C ZKSCAN3 Missense_Mutation p.Y370H 0.22 tolerated(0.07) probably_damaging(1) TCGA-68-7755-01 6 29275076 29275076 G T OR14J1 Missense_Mutation p.A204S 0.20 deleterious(0.03) benign(0.009) TCGA-68-7755-01 6 32017113 32017113 T C TNXB 5'Flank 0.20 TCGA-68-7755-01 6 33663299 33663299 C G SBP1 Missense_Mutation p.S59T 0.67 unknown(0) TCGA-68-7755-01 6 38858526 38858526 C T DNAH8 Nonsense_Mutation p.Q2641* 0.28 TCGA-68-7755-01 6 43484822 43484822 C T POLR1C 5'UTR 0.10 TCGA-68-7755-01 6 49753849 49753849 C A PGK2 Missense_Mutation p.G351V 0.49 deleterious(0) probably_damaging(0.999) TCGA-68-7755-01 6 51890557 51890557 C A PKHD1 Nonsense_Mutation p.G1351* 0.42 TCGA-68-7755-01 6 57512616 57512616 G T PRIM2 3'UTR 0.13 TCGA-68-7755-01 6 69703755 69703755 T G BAI3 Missense_Mutation p.N610K 0.11 deleterious(0.04) benign(0.239) TCGA-68-7755-01 6 97051497 97051497 C A FHL5 Missense_Mutation p.T3N 0.28 tolerated(0.2) benign(0.002) TCGA-68-7755-01 7 131848965 131848965 C T PLXNA4 Missense_Mutation p.G1479D 0.11 deleterious(0.01) probably_damaging(1) TCGA-68-7755-01 7 137782615 137782615 G T AKR1D1 Nonsense_Mutation p.G128* 0.47 TCGA-68-7755-01 7 140434499 140434499 C G BRAF Missense_Mutation p.L733F 0.47 deleterious(0.03) probably_damaging(0.974) TCGA-68-7755-01 7 141540862 141540862 C T PRSS37 5'UTR 0.35 TCGA-68-7755-01 7 142099492 142099492 C - TRBV7-8 Frame_Shift_Del p.E104Rfs*12 0.09 TCGA-68-7755-01 7 149523199 149523199 A T SSPO RNA 0.10 TCGA-68-7755-01 7 150932426 150932426 T A CHPF2 Missense_Mutation p.Y186N 0.44 deleterious(0) probably_damaging(0.999) TCGA-68-7755-01 7 31848707 31848707 C A PDE1C Missense_Mutation p.G670V 0.24 tolerated_low_confidence(0.27) benign(0.033) TCGA-68-7755-01 7 44054255 44054255 C A SPDYE1 3'Flank 0.24 TCGA-68-7755-01 7 44797501 44797501 G C ZMIZ2 Missense_Mutation p.G203R 0.30 deleterious(0.03) possibly_damaging(0.834) TCGA-68-7755-01 7 48315422 48315422 C T ABCA13 Silent p.Y2053Y 0.23 TCGA-68-7755-01 7 66410028 66410028 C G TMEM248 Silent p.L75L 0.76 TCGA-68-7755-01 7 73108359 73108359 A G WBSCR22 Missense_Mutation p.E227G 0.75 tolerated(0.27) possibly_damaging(0.527) TCGA-68-7755-01 7 82585910 82585910 C G PCLO Missense_Mutation p.Q1453H 0.69 unknown(0) TCGA-68-7755-01 7 91743001 91743001 C T CYP51A1 Missense_Mutation p.R503H 0.11 deleterious(0.05) benign(0.006) TCGA-68-7755-01 7 99026785 99026785 T C ATP5J2-PTCD1 Missense_Mutation p.S335G 0.73 deleterious(0.05) possibly_damaging(0.46) TCGA-68-7755-01 7 99699309 99699309 C G AP4M1 5'UTR 0.09 TCGA-68-7755-01 8 101117736 101117736 G A RGS22 Intron 0.29 TCGA-68-7755-01 8 113697833 113697833 A C CSMD3 Missense_Mutation p.S762A 0.42 tolerated(1) benign(0.08) TCGA-68-7755-01 8 144808661 144808661 C T FAM83H Silent p.P990P 0.29 TCGA-68-7755-01 8 145623707 145623707 G A CPSF1 Missense_Mutation p.R627C 0.26 deleterious(0.04) benign(0.301) TCGA-68-7755-01 8 17822113 17822113 A T PCM1 Silent p.A897A 0.55 TCGA-68-7755-01 8 33230062 33230062 C T FUT10 3'UTR 0.53 TCGA-68-7755-01 8 35541195 35541195 C A UNC5D Missense_Mutation p.A234D 0.34 deleterious(0) benign(0.158) TCGA-68-7755-01 8 35616837 35616837 G A UNC5D Splice_Site p.X722_splice 0.33 TCGA-68-7755-01 8 36793038 36793038 T G KCNU1 Missense_Mutation p.V1017G 0.10 deleterious(0) probably_damaging(0.993) TCGA-68-7755-01 8 39606957 39606957 T G ADAM2 Missense_Mutation p.K630Q 0.40 deleterious(0.05) benign(0.108) TCGA-68-7755-01 8 77766856 77766856 C G ZFHX4 Missense_Mutation p.H2567D 0.31 possibly_damaging(0.73) TCGA-68-7755-01 8 81888716 81888716 C A PAG1 3'UTR 0.32 TCGA-68-7755-01 8 99101751 99101751 C G C8orf47 Missense_Mutation p.S169C 0.41 deleterious(0.02) benign(0.166) TCGA-68-7755-01 9 117188531 117188531 C T DFNB31 Missense_Mutation p.A376T 0.27 tolerated(0.18) benign(0.021) TCGA-68-7755-01 9 21802747 21802747 C A MTAP 5'UTR 0.79 TCGA-68-7755-01 9 33442125 33442125 G A AQP3 Silent p.I265I 0.29 TCGA-68-7755-01 9 33468550 33468550 T C NOL6 Missense_Mutation p.T388A 0.34 deleterious(0.03) benign(0.11) TCGA-68-7755-01 9 71549952 71549952 G T PIP5K1B Missense_Mutation p.D450Y 0.44 deleterious_low_confidence(0.04) probably_damaging(0.974) TCGA-68-7755-01 9 8319961 8319961 C G PTPRD Missense_Mutation p.G1847A 0.29 deleterious(0) probably_damaging(0.999) TCGA-68-7755-01 9 99694497 99694497 G T NUTM2G Silent p.V170V 0.44 TCGA-68-7755-01 X 105011038 105011038 G T IL1RAPL2 Missense_Mutation p.R482L 0.57 deleterious(0.02) probably_damaging(1) TCGA-68-7755-01 X 110980051 110980051 C A ALG13 Missense_Mutation p.S880Y 0.29 deleterious(0.01) probably_damaging(0.996) TCGA-68-7755-01 X 137715128 137715128 T C FGF13 Silent p.P217P 0.23 TCGA-68-7755-01 X 1422873 1422873 C - CSF2RA Frame_Shift_Del p.V371Sfs*30 0.34 TCGA-68-7755-01 X 148798265 148798265 G T MAGEA11 Missense_Mutation p.Q373H 0.57 deleterious(0) benign(0.377) TCGA-68-7755-01 X 152770099 152770099 C T BGN Silent p.L4L 0.56 TCGA-68-7755-01 X 154250913 154250913 T A F8 5'UTR 0.58 TCGA-68-7755-01 X 154250916 154250916 A T F8 5'UTR 0.58 TCGA-68-7755-01 X 16836769 16836769 C G TXLNG Missense_Mutation p.Q59E 0.46 tolerated(0.12) benign(0.003) TCGA-68-7755-01 X 18582641 18582641 A C CDKL5 Missense_Mutation p.E48D 0.42 tolerated_low_confidence(0.14) benign(0.032) TCGA-68-7755-01 X 26212529 26212529 G T MAGEB6 Missense_Mutation p.R189L 0.21 tolerated(0.2) benign(0.014) TCGA-68-7755-01 X 26212782 26212782 A T MAGEB6 Missense_Mutation p.E273D 0.39 tolerated(0.89) probably_damaging(0.983) TCGA-68-7755-01 X 29301299 29301299 G T IL1RAPL1 Missense_Mutation p.L109F 0.35 tolerated(0.32) benign(0.018) TCGA-68-7755-01 X 37660565 37660565 G A CYBB Silent p.R287R 0.22 TCGA-68-7755-01 X 40518726 40518726 C A MED14 Missense_Mutation p.W1273L 0.29 tolerated(0.08) benign(0.288) TCGA-68-7755-01 X 40522265 40522265 G A MED14 Missense_Mutation p.A1199V 0.27 tolerated(0.3) benign(0.288) TCGA-68-7755-01 X 41007708 41007708 G A USP9X Silent p.V502V 0.21 TCGA-68-7755-01 X 48434708 48434708 G T RBM3 Missense_Mutation p.D73Y 0.33 deleterious(0) probably_damaging(0.997) TCGA-68-7755-01 X 48772599 48772599 C A PIM2 Missense_Mutation p.G98V 0.14 deleterious(0) probably_damaging(1) TCGA-68-7755-01 X 53222356 53222356 G A KDM5C Silent p.V1492V 0.36 TCGA-68-7755-01 X 53563591 53563591 C T HUWE1 Missense_Mutation p.G4059S 0.28 unknown(0) TCGA-68-7755-01 X 56296671 56296671 G T KLF8 Missense_Mutation p.R272L 0.35 deleterious(0) possibly_damaging(0.575) TCGA-68-7755-01 X 5821222 5821222 G T NLGN4X Silent p.I499I 0.26 TCGA-68-7755-01 X 73423493 73423493 T C RP3-368A4.5 RNA 0.55 TCGA-68-7755-01 X 79955513 79955513 T A BRWD3 Missense_Mutation p.K962N 0.20 tolerated(0.11) benign(0.188) TCGA-68-7755-01 X 91091004 91091004 C A PCDH11X Missense_Mutation p.D167E 0.67 deleterious(0.02) probably_damaging(1) TCGA-68-7755-01 X 91133713 91133713 T G PCDH11X Missense_Mutation p.V825G 0.27 deleterious(0) possibly_damaging(0.799) TCGA-68-7756-01 10 15255187 15255187 T A FAM171A1 Missense_Mutation p.E800D 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-68-7756-01 10 37454080 37454080 T A ANKRD30A Silent p.T631T 0.09 TCGA-68-7756-01 11 122659813 122659813 A T UBASH3B Missense_Mutation p.L259F 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-68-7756-01 11 124489577 124489577 C A PANX3 Missense_Mutation p.P309T 0.20 deleterious(0) probably_damaging(0.997) TCGA-68-7756-01 11 4615516 4615516 C A OR52I1 Missense_Mutation p.P83H 0.19 deleterious(0) probably_damaging(1) TCGA-68-7756-01 11 55370969 55370969 T A OR4C11 Missense_Mutation p.N294I 0.13 deleterious(0.02) benign(0.043) TCGA-68-7756-01 11 5798971 5798971 G T OR52N5 Missense_Mutation p.N298K 0.08 deleterious(0) probably_damaging(0.999) TCGA-68-7756-01 11 60696391 60696391 C A TMEM132A Silent p.L275L 0.25 TCGA-68-7756-01 11 67187027 67187027 C A CARNS1 Missense_Mutation p.L308M 0.25 tolerated(0.25) benign(0.337) TCGA-68-7756-01 12 111317886 111317886 G A CCDC63 Silent p.E222E 0.14 TCGA-68-7756-01 12 11546519 11546519 G T PRB2 Missense_Mutation p.Q165K 0.06 tolerated(0.56) unknown(0) TCGA-68-7756-01 12 117217144 117217144 C G RNFT2 Silent p.V291V 0.30 TCGA-68-7756-01 12 124241395 124241395 G T ATP6V0A2 Missense_Mutation p.R776L 0.17 deleterious(0.01) possibly_damaging(0.597) TCGA-68-7756-01 12 56101276 56101276 G C ITGA7 Missense_Mutation p.P64R 0.17 deleterious(0) probably_damaging(0.951) TCGA-68-7756-01 12 56221174 56221174 C A DNAJC14 Missense_Mutation p.Q423H 0.19 deleterious(0) benign(0.006) TCGA-68-7756-01 12 57909800 57909800 C T MARS Intron 0.12 TCGA-68-7756-01 12 6754500 6754501 CT - ACRBP Frame_Shift_Del p.R120Sfs*13 0.13 TCGA-68-7756-01 12 6840290 6840290 C T COPS7A 3'UTR 0.22 TCGA-68-7756-01 12 6925161 6925161 C G CD4 Intron 0.28 TCGA-68-7756-01 12 7867828 7867828 G T DPPA3 Missense_Mutation p.L44F 0.19 deleterious(0) probably_damaging(0.994) TCGA-68-7756-01 13 24243151 24243151 C T TNFRSF19 Missense_Mutation p.S387L 0.25 tolerated_low_confidence(1) benign(0.001) TCGA-68-7756-01 14 21945112 21945112 G T RAB2B 5'UTR 0.17 TCGA-68-7756-01 14 55836389 55836391 GAG - ATG14 In_Frame_Del p.S476del 0.15 TCGA-68-7756-01 14 80327924 80327924 T C NRXN3 Intron 0.27 TCGA-68-7756-01 14 88945627 88945627 G A PTPN21 Silent p.D716D 0.37 TCGA-68-7756-01 15 23931606 23931606 C A NDN Silent p.V253V 0.10 TCGA-68-7756-01 15 25488808 25488808 T G SNORD115-40 RNA 0.24 TCGA-68-7756-01 15 53957930 53957930 G A WDR72 Nonsense_Mutation p.R601* 0.24 TCGA-68-7756-01 15 62325740 62325740 A G VPS13C Silent p.S95S 0.29 TCGA-68-7756-01 15 70959104 70959106 TTC - UACA In_Frame_Del p.R1306del 0.23 TCGA-68-7756-01 15 83926568 83926568 G T BNC1 Missense_Mutation p.H871N 0.23 deleterious(0.03) benign(0.354) TCGA-68-7756-01 16 15831335 15831337 CTT - MYH11 In_Frame_Del p.K1095del 0.12 TCGA-68-7756-01 16 27245565 27245565 T C NSMCE1 Missense_Mutation p.I94V 0.16 tolerated(0.58) benign(0) TCGA-68-7756-01 16 28847698 28847698 G T ATXN2L Missense_Mutation p.G1064V 0.22 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-68-7756-01 16 3074292 3074293 CG - THOC6 5'UTR 0.27 TCGA-68-7756-01 16 48145816 48145816 T A ABCC12 Missense_Mutation p.L665F 0.20 deleterious(0) probably_damaging(0.999) TCGA-68-7756-01 16 70405840 70405840 A G DDX19A Missense_Mutation p.E463G 0.05 tolerated(0.19) probably_damaging(0.973) TCGA-68-7756-01 16 77327127 77327127 C A ADAMTS18 Missense_Mutation p.R1012M 0.15 deleterious(0.04) possibly_damaging(0.472) TCGA-68-7756-01 17 18036617 18036617 T C MYO15A Missense_Mutation p.F1467L 0.42 unknown(0) TCGA-68-7756-01 17 79205426 79205426 C A ENTHD2 Missense_Mutation p.G256V 0.22 deleterious(0) probably_damaging(1) TCGA-68-7756-01 18 247948 247948 T C THOC1 Silent p.P229P 0.27 TCGA-68-7756-01 18 28651575 28651575 G - DSC2 Frame_Shift_Del p.C709Afs*19 0.07 TCGA-68-7756-01 18 31463253 31463253 C A NOL4 Missense_Mutation p.G560W 0.04 deleterious(0) possibly_damaging(0.819) TCGA-68-7756-01 19 12157452 12157452 T C ZNF878 Missense_Mutation p.I43V 0.25 tolerated(0.71) benign(0.114) TCGA-68-7756-01 19 17441742 17441742 C A ANO8 Silent p.T296T 0.27 TCGA-68-7756-01 19 21990909 21990909 G C ZNF43 Missense_Mutation p.H644D 0.10 deleterious(0) probably_damaging(1) TCGA-68-7756-01 19 35803187 35803188 AA - MAG Intron 0.20 TCGA-68-7756-01 19 37976081 37976081 T A ZNF570 Silent p.I519I 0.06 TCGA-68-7756-01 19 49110503 49110503 T G SPACA4 Missense_Mutation p.C90G 0.25 deleterious(0) probably_damaging(0.995) TCGA-68-7756-01 19 49174102 49174102 C A NTN5 Missense_Mutation p.A48S 0.12 tolerated(0.69) benign(0.002) TCGA-68-7756-01 19 52076619 52076619 G T ZNF175 Missense_Mutation p.V13F 0.34 tolerated(0.09) possibly_damaging(0.69) TCGA-68-7756-01 19 55281277 55281277 G A KIR2DL1 5'UTR 0.33 TCGA-68-7756-01 1 11169740 11169740 C G MTOR Silent p.T2471T 0.21 TCGA-68-7756-01 1 12322031 12322031 T C VPS13D Silent p.F496F 0.10 TCGA-68-7756-01 1 152081438 152081438 C A TCHH Nonsense_Mutation p.E1419* 0.09 TCGA-68-7756-01 1 162381923 162381923 C T SH2D1B 5'Flank 0.33 TCGA-68-7756-01 1 169521797 169521800 TGAG - F5 Frame_Shift_Del p.L431Kfs*19 0.22 TCGA-68-7756-01 1 186092116 186092116 A G HMCN1 Missense_Mutation p.Y4088C 0.25 probably_damaging(0.926) TCGA-68-7756-01 1 196928243 196928243 C A CFHR2 3'UTR 0.33 TCGA-68-7756-01 1 237957269 237957269 C T RYR2 Nonsense_Mutation p.Q4629* 0.12 TCGA-68-7756-01 1 247875633 247875633 G T OR6F1 Missense_Mutation p.A142E 0.28 tolerated(0.05) possibly_damaging(0.72) TCGA-68-7756-01 1 248202348 248202348 G A OR2L2 Missense_Mutation p.R260H 0.17 tolerated(0.12) benign(0.022) TCGA-68-7756-01 1 248845416 248845416 G T OR14I1 Missense_Mutation p.L64I 0.10 deleterious(0) probably_damaging(0.936) TCGA-68-7756-01 1 70740494 70740494 G A ANKRD13C Missense_Mutation p.H435Y 0.14 tolerated(0.33) possibly_damaging(0.884) TCGA-68-7756-01 1 71477944 71477944 C A PTGER3 Intron 0.18 TCGA-68-7756-01 1 71477945 71477945 C A PTGER3 Intron 0.18 TCGA-68-7756-01 1 86896581 86896581 G T CLCA2 Missense_Mutation p.W171L 0.23 deleterious(0) probably_damaging(1) TCGA-68-7756-01 1 91406593 91406593 T A ZNF644 Missense_Mutation p.E106D 0.13 tolerated(0.18) probably_damaging(0.992) TCGA-68-7756-01 1 94041647 94041649 TCC - BCAR3 In_Frame_Del p.R575del 0.20 TCGA-68-7756-01 20 16712876 16712876 G A SNRPB2 Silent p.K44K 0.16 TCGA-68-7756-01 20 31023320 31023320 C T ASXL1 Silent p.P935P 0.23 TCGA-68-7756-01 20 44642047 44642047 G T MMP9 Missense_Mutation p.G495V 0.25 tolerated(0.11) probably_damaging(0.947) TCGA-68-7756-01 20 4705388 4705388 G A PRND Missense_Mutation p.R64H 0.21 tolerated_low_confidence(0.08) benign(0) TCGA-68-7756-01 21 43236095 43236097 CTT - PRDM15 In_Frame_Del p.K1152del 0.30 TCGA-68-7756-01 22 22453357 22453357 T A IGLV8-61 Missense_Mutation p.S35T 0.19 tolerated(0.18) benign(0.416) TCGA-68-7756-01 22 26829878 26829878 C T ASPHD2 Silent p.N99N 0.26 TCGA-68-7756-01 22 32587196 32587196 G T RFPL2 Missense_Mutation p.P234T 0.18 deleterious(0.01) possibly_damaging(0.894) TCGA-68-7756-01 22 50278837 50278837 C A ZBED4 Silent p.V509V 0.17 TCGA-68-7756-01 2 102955489 102955489 A G IL1RL1 Missense_Mutation p.Y85C 0.21 deleterious(0) probably_damaging(1) TCGA-68-7756-01 2 112786014 112786014 T A MERTK Nonsense_Mutation p.L858* 0.24 TCGA-68-7756-01 2 120005741 120005741 C G STEAP3 Missense_Mutation p.R337G 0.24 tolerated(0.26) probably_damaging(0.933) TCGA-68-7756-01 2 178098957 178098957 G A NFE2L2 Missense_Mutation p.L30F 0.18 deleterious(0) probably_damaging(1) TCGA-68-7756-01 2 219603540 219603542 CCT - TTLL4 In_Frame_Del p.P382del 0.12 TCGA-68-7756-01 2 27804606 27804606 C A C2orf16 Silent p.R1723R 0.28 TCGA-68-7756-01 2 48873903 48873903 T C STON1-GTF2A1L Missense_Mutation p.C938R 0.17 tolerated(0.27) benign(0) TCGA-68-7756-01 2 90229417 90229417 G T IGKV1D-42 Silent p.G79G 0.12 TCGA-68-7756-01 2 97427734 97427734 G A CNNM4 Missense_Mutation p.R333H 0.25 deleterious(0) benign(0.005) TCGA-68-7756-01 3 101370196 101370196 A T ZBTB11 Silent p.T992T 0.18 TCGA-68-7756-01 3 108474712 108474712 A T RETNLB Silent p.G83G 0.19 TCGA-68-7756-01 3 124458975 124458975 C T UMPS Missense_Mutation p.R363W 0.14 deleterious(0) probably_damaging(0.983) TCGA-68-7756-01 3 125734366 125734366 C G SLC41A3 Missense_Mutation p.G314A 0.14 deleterious(0) probably_damaging(0.987) TCGA-68-7756-01 3 148459902 148459902 A - AGTR1 Frame_Shift_Del p.*360C 0.12 TCGA-68-7756-01 3 159711506 159711506 A T IL12A Missense_Mutation p.I161F 0.06 deleterious(0) probably_damaging(0.96) TCGA-68-7756-01 3 165548139 165548139 C G BCHE Missense_Mutation p.G228A 0.14 deleterious(0) probably_damaging(1) TCGA-68-7756-01 3 167000026 167000026 C A ZBBX Missense_Mutation p.D752Y 0.13 deleterious(0) probably_damaging(0.961) TCGA-68-7756-01 3 171404510 171404510 C T PLD1 Missense_Mutation p.S611N 0.17 tolerated(0.55) benign(0.046) TCGA-68-7756-01 3 185212979 185212979 G A TMEM41A Missense_Mutation p.S133F 0.07 tolerated(0.67) benign(0.013) TCGA-68-7756-01 3 30713544 30713546 AGA - TGFBR2 In_Frame_Del p.K316del 0.45 TCGA-68-7756-01 3 37061906 37061906 C T MLH1 Silent p.I330I 0.13 TCGA-68-7756-01 4 106639040 106639040 G C GSTCD Missense_Mutation p.L90F 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-68-7756-01 5 1037950 1037950 C T NKD2 Missense_Mutation p.P273L 0.20 tolerated(0.72) benign(0.311) TCGA-68-7756-01 5 140222223 140222223 C A PCDHA8 Silent p.A439A 0.23 TCGA-68-7756-01 5 140755530 140755530 G A PCDHGA6 Missense_Mutation p.R627H 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.643) TCGA-68-7756-01 5 1420737 1420737 C A SLC6A3 Missense_Mutation p.D292Y 0.21 deleterious(0.01) possibly_damaging(0.467) TCGA-68-7756-01 5 21752263 21752263 G A CDH12 Silent p.N656N 0.23 TCGA-68-7756-01 5 83259028 83259032 TCTTT - EDIL3 Frame_Shift_Del p.K429* 0.20 TCGA-68-7756-01 5 86645146 86645149 CAAT - RASA1 Frame_Shift_Del p.N407Sfs*3 0.23 TCGA-68-7756-01 5 96503544 96503544 C T RIOK2 Missense_Mutation p.A342T 0.22 tolerated(0.4) benign(0.001) TCGA-68-7756-01 6 116949126 116949128 AAG - RSPH4A In_Frame_Del p.E421del 0.15 TCGA-68-7756-01 6 137815214 137815214 G A OLIG3 Missense_Mutation p.H32Y 0.22 tolerated(1) benign(0.14) TCGA-68-7756-01 6 30122087 30122087 C T TRIM10 Missense_Mutation p.V369M 0.18 deleterious(0.03) probably_damaging(0.989) TCGA-68-7756-01 6 39869685 39869685 G C DAAM2 Missense_Mutation p.V1027L 0.09 deleterious(0.01) probably_damaging(0.986) TCGA-68-7756-01 6 74492354 74492354 G T CD109 Missense_Mutation p.A661S 0.19 tolerated(0.76) benign(0.004) TCGA-68-7756-01 6 90605287 90605287 C A GJA10 Missense_Mutation p.S367Y 0.15 tolerated(0.12) possibly_damaging(0.59) TCGA-68-7756-01 7 100352901 100352901 C G ZAN Missense_Mutation p.C1059W 0.21 unknown(0) TCGA-68-7756-01 7 104747645 104747646 AA - KMT2E Frame_Shift_Del p.K961Efs*5 0.17 TCGA-68-7756-01 7 138444614 138444614 G A ATP6V0A4 Silent p.A174A 0.15 TCGA-68-7756-01 7 138969303 138969303 G T UBN2 Missense_Mutation p.V1218L 0.20 tolerated_low_confidence(0.08) benign(0.051) TCGA-68-7756-01 7 38543304 38543304 C A AMPH Missense_Mutation p.A51S 0.10 tolerated(0.39) probably_damaging(0.92) TCGA-68-7756-01 8 100493843 100493846 AACT - VPS13B Frame_Shift_Del p.T1230Ifs*3 0.11 TCGA-68-7756-01 8 101083607 101083607 G A RGS22 Missense_Mutation p.S195L 0.06 deleterious(0.02) probably_damaging(0.949) TCGA-68-7756-01 8 113237100 113237100 G T CSMD3 Missense_Mutation p.A3675E 0.22 deleterious(0) probably_damaging(0.917) TCGA-68-7756-01 8 113349886 113349886 C A CSMD3 Missense_Mutation p.G2243C 0.19 deleterious(0) probably_damaging(1) TCGA-68-7756-01 8 113569062 113569062 G A CSMD3 Silent p.H1388H 0.28 TCGA-68-7756-01 8 30973982 30973982 G A WRN Missense_Mutation p.A796T 0.27 deleterious(0) probably_damaging(1) TCGA-68-7756-01 8 33406961 33406961 C A RNF122 Missense_Mutation p.G107V 0.25 deleterious(0) probably_damaging(1) TCGA-68-7756-01 9 104433114 104433114 A G GRIN3A Missense_Mutation p.F527S 0.15 deleterious(0) probably_damaging(1) TCGA-68-7756-01 9 121929930 121929930 T A BRINP1 Missense_Mutation p.E573V 0.23 deleterious(0) probably_damaging(0.95) TCGA-68-7756-01 9 123156868 123156871 CAAA - CDK5RAP2 Frame_Shift_Del p.F1833Nfs*10 0.16 TCGA-68-7756-01 9 135202538 135202540 CTT - SETX In_Frame_Del p.E1482del 0.25 TCGA-68-7756-01 9 138378002 138378002 G C PPP1R26 Missense_Mutation p.G549A 0.23 tolerated(0.05) probably_damaging(0.959) TCGA-68-7756-01 9 138557114 138557114 G A LCN9 Missense_Mutation p.V111I 0.36 tolerated(1) benign(0.173) TCGA-68-7756-01 9 19786332 19786332 G T SLC24A2 Missense_Mutation p.T178N 0.30 deleterious(0) probably_damaging(1) TCGA-68-7756-01 9 35044346 35044347 AG - C9orf131 Frame_Shift_Del p.R574Sfs*2 0.18 TCGA-68-7756-01 9 73442856 73442856 G C TRPM3 Missense_Mutation p.L294V 0.20 deleterious(0) possibly_damaging(0.679) TCGA-68-7756-01 9 90500608 90500608 C A SPATA31E1 Silent p.T402T 0.17 TCGA-68-7756-01 X 123200077 123200077 A - STAG2 Frame_Shift_Del p.T718Lfs*23 0.32 TCGA-68-7756-01 X 134856812 134856812 A T CT45A1 3'UTR 0.06 TCGA-68-7756-01 X 21674741 21674741 C A KLHL34 Missense_Mutation p.R389L 0.30 tolerated(0.41) benign(0.003) TCGA-68-7756-01 X 49963316 49963316 G A AKAP4 Missense_Mutation p.R39W 0.32 tolerated(0.08) possibly_damaging(0.891) TCGA-68-7756-01 X 73042890 73042890 T - XIST RNA 0.23 TCGA-68-7757-01 10 100017876 100017876 G A LOXL4 Missense_Mutation p.R323W 0.19 deleterious(0) probably_damaging(1) TCGA-68-7757-01 10 104486751 104486751 G T SFXN2 Missense_Mutation p.V57F 0.15 deleterious(0.05) benign(0.051) TCGA-68-7757-01 10 123844397 123844397 G A TACC2 Silent p.T794T 0.17 TCGA-68-7757-01 10 13167542 13167542 G T OPTN Nonsense_Mutation p.E375* 0.11 TCGA-68-7757-01 10 131762006 131762006 C A EBF3 Silent p.P9P 0.27 TCGA-68-7757-01 10 13534618 13534618 G T BEND7 Missense_Mutation p.S225Y 0.17 deleterious_low_confidence(0.01) probably_damaging(0.926) TCGA-68-7757-01 10 29754657 29754657 C T SVIL Silent p.A2000A 0.09 TCGA-68-7757-01 10 31750093 31750093 A G ZEB1 Silent p.P62P 0.14 TCGA-68-7757-01 10 31810657 31810657 C T ZEB1 Silent p.N799N 0.15 TCGA-68-7757-01 10 34420482 34420482 C A PARD3 Missense_Mutation p.R1153L 0.12 deleterious(0) probably_damaging(0.996) TCGA-68-7757-01 10 38344794 38344794 A G ZNF33A Missense_Mutation p.Y581C 0.22 deleterious(0.02) probably_damaging(0.994) TCGA-68-7757-01 10 44139623 44139623 T A ZNF32 Missense_Mutation p.I233F 0.21 tolerated(0.41) benign(0.033) TCGA-68-7757-01 10 55626521 55626521 A G PCDH15 Missense_Mutation p.Y1200H 0.13 tolerated(0.14) benign(0.098) TCGA-68-7757-01 10 7780707 7780708 - A ITIH2 Frame_Shift_Ins p.H695Tfs*6 0.19 TCGA-68-7757-01 10 89692902 89692902 G A PTEN Missense_Mutation p.G129E 0.13 deleterious(0) probably_damaging(0.998) TCGA-68-7757-01 10 89720695 89720695 A G PTEN Silent p.G282G 0.16 TCGA-68-7757-01 11 107304397 107304397 C T CWF19L2 Missense_Mutation p.S248N 0.09 tolerated(1) benign(0) TCGA-68-7757-01 11 114453646 114453646 A G NXPE4 Missense_Mutation p.L65P 0.17 tolerated(1) benign(0) TCGA-68-7757-01 11 118971779 118971779 G C DPAGT1 Silent p.P77P 0.18 TCGA-68-7757-01 11 124267068 124267068 G A OR8B3 Silent p.Y60Y 0.17 TCGA-68-7757-01 11 132307187 132307187 C A OPCML Missense_Mutation p.G198V 0.09 deleterious(0) probably_damaging(1) TCGA-68-7757-01 11 26714126 26714126 C A SLC5A12 Missense_Mutation p.A355S 0.14 deleterious(0.03) possibly_damaging(0.822) TCGA-68-7757-01 11 49207281 49207281 C T FOLH1 Missense_Mutation p.G256R 0.17 deleterious(0) probably_damaging(1) TCGA-68-7757-01 11 5020548 5020548 G T OR51L1 Silent p.L112L 0.19 TCGA-68-7757-01 11 51515842 51515842 C G OR4C46 Missense_Mutation p.C187W 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-68-7757-01 11 5462462 5462462 C A OR51I1 Missense_Mutation p.A95S 0.18 tolerated(1) benign(0.001) TCGA-68-7757-01 11 55340502 55340502 G A OR4C16 Nonsense_Mutation p.W300* 0.15 TCGA-68-7757-01 11 55371099 55371099 G A OR4C11 Missense_Mutation p.P251S 0.21 deleterious(0) probably_damaging(0.956) TCGA-68-7757-01 11 55944267 55944267 C G OR5J2 Silent p.P58P 0.14 TCGA-68-7757-01 11 55944715 55944715 A G OR5J2 Missense_Mutation p.M208V 0.16 tolerated(0.59) benign(0.006) TCGA-68-7757-01 11 56043280 56043280 G A OR5T1 Missense_Mutation p.G56R 0.15 deleterious(0) probably_damaging(0.98) TCGA-68-7757-01 11 56344931 56344931 C G OR5M10 Missense_Mutation p.Q89H 0.21 tolerated(0.1) benign(0.003) TCGA-68-7757-01 11 56510547 56510547 T A OR9G4 Silent p.S247S 0.12 TCGA-68-7757-01 11 56756422 56756422 T C OR5AK2 Missense_Mutation p.F12L 0.14 deleterious(0) possibly_damaging(0.687) TCGA-68-7757-01 11 6007692 6007692 C A OR52L1 Missense_Mutation p.G157W 0.12 deleterious(0.03) possibly_damaging(0.844) TCGA-68-7757-01 11 61110270 61110270 A G DAK Silent p.S273S 0.11 TCGA-68-7757-01 11 64851011 64851011 C T CDCA5 Silent p.A51A 0.11 TCGA-68-7757-01 11 65811096 65811096 G A GAL3ST3 Missense_Mutation p.R60C 0.17 tolerated(0.07) probably_damaging(0.96) TCGA-68-7757-01 11 66888796 66888796 C G KDM2A Silent p.P3P 0.20 TCGA-68-7757-01 11 67400075 67400075 A T TBX10 Missense_Mutation p.W258R 0.14 deleterious(0) probably_damaging(0.959) TCGA-68-7757-01 11 67804094 67804094 A G NDUFS8 3'UTR 0.17 TCGA-68-7757-01 11 78433963 78433963 C A TENM4 Splice_Site p.X1184_splice 0.11 TCGA-68-7757-01 11 88301015 88301015 G C GRM5 Silent p.S612S 0.17 TCGA-68-7757-01 11 89867912 89867912 G T NAALAD2 5'UTR 0.07 TCGA-68-7757-01 12 101731855 101731855 A G UTP20 Missense_Mutation p.K1223R 0.22 tolerated(0.4) benign(0.005) TCGA-68-7757-01 12 103249035 103249035 C A PAH Missense_Mutation p.K195N 0.29 tolerated(0.43) possibly_damaging(0.807) TCGA-68-7757-01 12 119563261 119563261 C A SRRM4 Silent p.S197S 0.17 TCGA-68-7757-01 12 12397479 12397479 C A LRP6 Missense_Mutation p.V56L 0.17 tolerated(0.71) benign(0.002) TCGA-68-7757-01 12 124139471 124139471 G A GTF2H3 Missense_Mutation p.V163M 0.09 deleterious(0) probably_damaging(0.976) TCGA-68-7757-01 12 12630877 12630877 C T DUSP16 Silent p.K296K 0.13 TCGA-68-7757-01 12 31132554 31132554 G A TSPAN11 Silent p.G135G 0.11 TCGA-68-7757-01 12 41831800 41831800 G T PDZRN4 Intron 0.21 TCGA-68-7757-01 12 51089082 51089082 A T DIP2B Silent p.V584V 0.15 TCGA-68-7757-01 12 52451257 52451257 A G NR4A1 Missense_Mutation p.S508G 0.06 tolerated(0.16) benign(0) TCGA-68-7757-01 12 55524474 55524474 T A OR9K2 Missense_Mutation p.L308M 0.19 deleterious(0.01) probably_damaging(1) TCGA-68-7757-01 12 56332752 56332752 G T DGKA Missense_Mutation p.W151C 0.14 deleterious(0) probably_damaging(0.999) TCGA-68-7757-01 12 56718122 56718122 C A PAN2 Missense_Mutation p.M628I 0.10 tolerated(0.7) benign(0.009) TCGA-68-7757-01 12 67703753 67703753 C T CAND1 Missense_Mutation p.A1033V 0.15 deleterious(0.05) possibly_damaging(0.52) TCGA-68-7757-01 12 72863690 72863690 C A TRHDE Missense_Mutation p.Q445K 0.20 deleterious(0.01) possibly_damaging(0.547) TCGA-68-7757-01 12 7653792 7653792 C G CD163 Missense_Mutation p.G134R 0.15 deleterious(0) probably_damaging(0.982) TCGA-68-7757-01 12 94649067 94649067 C A PLXNC1 Missense_Mutation p.P1028T 0.08 deleterious(0) probably_damaging(1) TCGA-68-7757-01 13 102379017 102379017 C A FGF14 Silent p.G189G 0.19 TCGA-68-7757-01 13 102379018 102379018 C A FGF14 Missense_Mutation p.G189V 0.19 deleterious(0) probably_damaging(1) TCGA-68-7757-01 13 109817265 109817265 G A MYO16 Missense_Mutation p.M1705I 0.32 tolerated_low_confidence(0.35) benign(0.006) TCGA-68-7757-01 13 27679988 27679988 T A USP12 Missense_Mutation p.R75W 0.30 deleterious(0) possibly_damaging(0.762) TCGA-68-7757-01 13 32776162 32776162 C T FRY Silent p.S1277S 0.20 TCGA-68-7757-01 13 51963500 51963500 C A INTS6 Missense_Mutation p.V232L 0.13 deleterious(0) probably_damaging(0.984) TCGA-68-7757-01 13 76374866 76374866 G T LMO7 5'UTR 0.20 TCGA-68-7757-01 14 102548773 102548773 C T HSP90AA1 Silent p.V710V 0.17 TCGA-68-7757-01 14 19558990 19558990 G T POTEG Splice_Site p.X213_splice 0.05 TCGA-68-7757-01 14 19558991 19558991 G T POTEG Missense_Mutation p.A213S 0.05 deleterious(0.01) probably_damaging(0.984) TCGA-68-7757-01 14 20388979 20388979 T A OR4K5 Missense_Mutation p.C72S 0.05 tolerated(0.21) possibly_damaging(0.844) TCGA-68-7757-01 14 20665793 20665793 T A OR11G2 Missense_Mutation p.L100Q 0.14 deleterious(0) probably_damaging(0.968) TCGA-68-7757-01 14 22133809 22133809 C A OR4E2 Silent p.P171P 0.20 TCGA-68-7757-01 14 24590625 24590625 G T DCAF11 Missense_Mutation p.G433V 0.04 deleterious(0) probably_damaging(0.998) TCGA-68-7757-01 14 31381312 31381312 C T STRN3 Missense_Mutation p.R484Q 0.19 deleterious(0) probably_damaging(0.994) TCGA-68-7757-01 14 36783785 36783785 T A MBIP Missense_Mutation p.E168D 0.16 tolerated(0.07) benign(0.073) TCGA-68-7757-01 14 39762551 39762551 A G CTAGE5 Missense_Mutation p.E159G 0.16 deleterious(0.04) benign(0.106) TCGA-68-7757-01 14 45414306 45414306 T A KLHL28 Missense_Mutation p.T276S 0.05 tolerated(0.78) benign(0.03) TCGA-68-7757-01 14 47351340 47351340 C T MDGA2 Missense_Mutation p.E775K 0.18 deleterious(0.02) possibly_damaging(0.725) TCGA-68-7757-01 14 60074106 60074106 C A RTN1 Missense_Mutation p.V624L 0.11 tolerated(0.12) possibly_damaging(0.837) TCGA-68-7757-01 14 78325575 78325575 A T ADCK1 Missense_Mutation p.S126C 0.15 deleterious(0.01) possibly_damaging(0.834) TCGA-68-7757-01 14 88431854 88431854 A T GALC Missense_Mutation p.V343E 0.09 deleterious(0) probably_damaging(0.987) TCGA-68-7757-01 14 89039043 89039043 G T ZC3H14 Missense_Mutation p.D185Y 0.20 deleterious(0) probably_damaging(0.979) TCGA-68-7757-01 14 93119043 93119043 A G RIN3 Missense_Mutation p.Y550C 0.22 tolerated(0.09) possibly_damaging(0.757) TCGA-68-7757-01 14 96180331 96180331 C T TCL1A Missense_Mutation p.V25M 0.17 deleterious(0.02) probably_damaging(0.935) TCGA-68-7757-01 15 102294647 102294647 C T DNM1P47 RNA 0.17 TCGA-68-7757-01 15 102359248 102359248 T C OR4F15 Missense_Mutation p.Y287H 0.21 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-68-7757-01 15 20170074 20170074 C A IGHV1OR15-9 Missense_Mutation p.W66C 0.17 deleterious(0) probably_damaging(1) TCGA-68-7757-01 15 25468303 25468303 C A SNORD115-27 3'Flank 0.35 TCGA-68-7757-01 15 25472339 25472339 G T SNORD115-33 5'Flank 0.14 TCGA-68-7757-01 15 28459400 28459400 C G HERC2 Missense_Mutation p.R2126P 0.13 possibly_damaging(0.885) TCGA-68-7757-01 15 34159927 34159927 C A AVEN Missense_Mutation p.A248S 0.16 tolerated(0.32) benign(0.098) TCGA-68-7757-01 15 40661277 40661277 C T DISP2 Silent p.L988L 0.15 TCGA-68-7757-01 15 43896328 43896328 A T STRC Missense_Mutation p.L1414Q 0.14 deleterious(0) probably_damaging(0.931) TCGA-68-7757-01 15 48703484 48703484 G T FBN1 Missense_Mutation p.N2773K 0.14 benign(0.033) TCGA-68-7757-01 15 50557808 50557808 C A HDC Nonsense_Mutation p.E5* 0.18 TCGA-68-7757-01 15 50557810 50557810 G A HDC Missense_Mutation p.P4L 0.18 tolerated(0.42) benign(0.003) TCGA-68-7757-01 15 54307092 54307092 T A UNC13C Silent p.A664A 0.17 TCGA-68-7757-01 15 55965714 55965714 G T PRTG Silent p.L569L 0.20 TCGA-68-7757-01 15 70959811 70959814 TGTT - UACA Frame_Shift_Del p.K1070Sfs*2 0.10 TCGA-68-7757-01 15 78805460 78805460 G T HYKK Missense_Mutation p.E10D 0.11 tolerated(0.15) benign(0.002) TCGA-68-7757-01 15 89079589 89079589 A G DET1 5'UTR 0.21 TCGA-68-7757-01 15 91428425 91428433 CATGTCCCT - FES In_Frame_Del p.H50_L53delinsQ 0.11 TCGA-68-7757-01 16 11868239 11868239 C T ZC3H7A Silent p.E252E 0.10 TCGA-68-7757-01 16 22558250 22558250 T A RP11-368J21.3 RNA 0.18 TCGA-68-7757-01 16 2348462 2348462 G A ABCA3 Silent p.S607S 0.15 TCGA-68-7757-01 16 25235878 25235878 A T AQP8 Missense_Mutation p.T195S 0.21 deleterious(0.02) benign(0.314) TCGA-68-7757-01 16 25268193 25268193 C T ZKSCAN2 Missense_Mutation p.E86K 0.23 deleterious(0) probably_damaging(0.999) TCGA-68-7757-01 16 31488884 31488884 A T TGFB1I1 Missense_Mutation p.K458M 0.19 deleterious(0) probably_damaging(0.998) TCGA-68-7757-01 16 67472895 67472895 C G ATP6V0D1 Missense_Mutation p.K265N 0.13 deleterious(0.04) benign(0.128) TCGA-68-7757-01 16 69875927 69875927 G A WWP2 Missense_Mutation p.G160E 0.15 tolerated(0.28) benign(0.006) TCGA-68-7757-01 16 75263895 75263895 C A BCAR1 Missense_Mutation p.Q755H 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-68-7757-01 16 89628791 89628791 G A RPL13 Missense_Mutation p.V157I 0.21 tolerated(1) benign(0) TCGA-68-7757-01 16 89661839 89661839 C A CPNE7 Missense_Mutation p.A531D 0.16 deleterious(0) probably_damaging(0.991) TCGA-68-7757-01 16 89735823 89735823 G C SPATA33 Missense_Mutation p.R113P 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-68-7757-01 17 10427798 10427798 C G MYH2 Missense_Mutation p.Q1720H 0.22 tolerated(0.05) benign(0.208) TCGA-68-7757-01 17 25936227 25936227 G T KSR1 Missense_Mutation p.M584I 0.25 deleterious(0.02) probably_damaging(0.991) TCGA-68-7757-01 17 25936228 25936228 G T KSR1 Nonsense_Mutation p.G585* 0.25 TCGA-68-7757-01 17 27844552 27844552 C T TAOK1 Nonsense_Mutation p.Q596* 0.17 TCGA-68-7757-01 17 36357205 36357205 C A RP11-1407O15.2 Missense_Mutation p.V350L 0.13 TCGA-68-7757-01 17 38926547 38926547 G T KRT26 Silent p.T213T 0.09 TCGA-68-7757-01 17 42883056 42883056 A C GJC1 Missense_Mutation p.Y44D 0.35 deleterious(0) probably_damaging(0.997) TCGA-68-7757-01 17 46673760 46673760 C A HOXB6 3'UTR 0.34 TCGA-68-7757-01 17 51901183 51901183 C G KIF2B Silent p.T263T 0.27 TCGA-68-7757-01 17 56277628 56277628 C A EPX Missense_Mutation p.A527D 0.23 deleterious(0) probably_damaging(0.993) TCGA-68-7757-01 17 6979358 6979358 G A CLEC10A Silent p.L156L 0.19 TCGA-68-7757-01 17 73500314 73500314 T C CASKIN2 Silent p.E483E 0.27 TCGA-68-7757-01 17 74732424 74732424 T C SRSF2 Missense_Mutation p.K162R 0.41 tolerated(0.8) unknown(0) TCGA-68-7757-01 17 74902156 74902156 G C MGAT5B Silent p.R315R 0.38 TCGA-68-7757-01 17 7577120 7577120 C A TP53 Missense_Mutation p.R273L 0.35 deleterious(0) probably_damaging(0.993) TCGA-68-7757-01 17 79982190 79982190 C A LRRC45 Missense_Mutation p.T86N 0.12 deleterious(0) possibly_damaging(0.548) TCGA-68-7757-01 18 22805052 22805052 C A ZNF521 Missense_Mutation p.G944C 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-68-7757-01 18 50985604 50985604 A C DCC Missense_Mutation p.K1132T 0.23 deleterious(0) benign(0.269) TCGA-68-7757-01 18 56202748 56202748 C A ALPK2 Silent p.T1557T 0.11 TCGA-68-7757-01 19 10202787 10202787 C T C19orf66 Missense_Mutation p.R229W 0.14 deleterious(0) probably_damaging(0.994) TCGA-68-7757-01 19 10578162 10578162 G - PDE4A Frame_Shift_Del p.A843Rfs*130 0.13 TCGA-68-7757-01 19 11096053 11096053 G T SMARCA4 Silent p.P109P 0.12 TCGA-68-7757-01 19 11979208 11979208 G T ZNF439 Nonsense_Mutation p.E442* 0.24 TCGA-68-7757-01 19 12760946 12760946 C A MAN2B1 Nonsense_Mutation p.E713* 0.19 TCGA-68-7757-01 19 15299962 15299962 C A NOTCH3 Missense_Mutation p.G406C 0.18 deleterious(0) probably_damaging(1) TCGA-68-7757-01 19 15838885 15838885 A T OR10H2 Missense_Mutation p.E11V 0.12 deleterious(0) possibly_damaging(0.557) TCGA-68-7757-01 19 16687344 16687344 G A MED26 Nonsense_Mutation p.Q433* 0.21 TCGA-68-7757-01 19 17678316 17678316 G T COLGALT1 Silent p.A197A 0.15 TCGA-68-7757-01 19 21366167 21366167 A G ZNF431 Missense_Mutation p.N354S 0.13 tolerated(0.39) benign(0.056) TCGA-68-7757-01 19 22952000 22952000 C A ZNF99 Missense_Mutation p.G44C 0.12 deleterious(0) probably_damaging(0.965) TCGA-68-7757-01 19 2933958 2933958 G A ZNF77 Silent p.F389F 0.05 TCGA-68-7757-01 19 3179715 3179715 T G S1PR4 Missense_Mutation p.F309V 0.15 deleterious(0.01) benign(0.219) TCGA-68-7757-01 19 36546049 36546049 G T WDR62 Missense_Mutation p.R59L 0.16 deleterious(0) probably_damaging(0.963) TCGA-68-7757-01 19 39019013 39019013 C A RYR1 Missense_Mutation p.A3631E 0.15 benign(0.003) TCGA-68-7757-01 19 40407995 40407995 C A FCGBP Missense_Mutation p.G1576C 0.16 unknown(0) TCGA-68-7757-01 19 41188819 41188819 C A NUMBL Missense_Mutation p.A102S 0.11 deleterious(0.02) possibly_damaging(0.617) TCGA-68-7757-01 19 44301649 44301649 C A LYPD5 3'UTR 0.23 TCGA-68-7757-01 19 44352541 44352541 G C ZNF283 Missense_Mutation p.E596D 0.21 deleterious(0.04) benign(0.105) TCGA-68-7757-01 19 44536152 44536152 A G ZNF222 Missense_Mutation p.T149A 0.18 tolerated(0.43) benign(0.043) TCGA-68-7757-01 19 45004294 45004294 G C ZNF180 5'UTR 0.16 TCGA-68-7757-01 19 51411738 51411738 G A KLK4 Silent p.T163T 0.16 TCGA-68-7757-01 19 51563117 51563117 C A KLK13 Missense_Mutation p.R158L 0.13 tolerated(1) benign(0.02) TCGA-68-7757-01 19 55086335 55086335 C A LILRA2 Missense_Mutation p.Q164K 0.18 tolerated(0.08) possibly_damaging(0.895) TCGA-68-7757-01 19 55286617 55286617 G C KIR2DL1 Missense_Mutation p.G124A 0.11 deleterious(0) probably_damaging(0.997) TCGA-68-7757-01 19 55671363 55671363 G A DNAAF3 Missense_Mutation p.S423F 0.16 tolerated(0.09) benign(0.011) TCGA-68-7757-01 19 59025626 59025626 T C ZBTB45 Missense_Mutation p.D444G 0.32 deleterious(0.01) benign(0.103) TCGA-68-7757-01 19 6495684 6495684 G T TUBB4A Silent p.R276R 0.13 TCGA-68-7757-01 19 9062663 9062663 T C MUC16 Silent p.E8261E 0.19 TCGA-68-7757-01 19 9074633 9074633 G T MUC16 Silent p.A4271A 0.17 TCGA-68-7757-01 1 102312476 102312476 G T OLFM3 Intron 0.06 TCGA-68-7757-01 1 114640461 114640461 C A SYT6 Missense_Mutation p.G383V 0.10 deleterious(0) probably_damaging(0.998) TCGA-68-7757-01 1 118035838 118035838 A G MAN1A2 Missense_Mutation p.D413G 0.22 tolerated(0.67) benign(0.008) TCGA-68-7757-01 1 12018597 12018597 G T PLOD1 Missense_Mutation p.V290F 0.11 deleterious(0) possibly_damaging(0.495) TCGA-68-7757-01 1 144825427 144825427 C T NBPF9 Missense_Mutation p.P459L 0.16 deleterious(0) probably_damaging(0.998) TCGA-68-7757-01 1 151748919 151748919 C A TDRKH Missense_Mutation p.S347I 0.16 deleterious(0.04) benign(0.365) TCGA-68-7757-01 1 152323574 152323574 T A FLG2 Missense_Mutation p.T2230S 0.16 benign(0.101) TCGA-68-7757-01 1 152749097 152749097 A T LCE1F Missense_Mutation p.R84W 0.09 deleterious_low_confidence(0.02) unknown(0) TCGA-68-7757-01 1 154988275 154988275 G T ZBTB7B Missense_Mutation p.G414V 0.26 deleterious(0.05) probably_damaging(0.914) TCGA-68-7757-01 1 156220390 156220390 C G SMG5 Missense_Mutation p.K1013N 0.19 deleterious(0) probably_damaging(0.991) TCGA-68-7757-01 1 156622386 156622386 G A BCAN Silent p.E548E 0.20 TCGA-68-7757-01 1 158549422 158549422 T C OR10X1 Missense_Mutation p.T90A 0.20 deleterious(0) possibly_damaging(0.64) TCGA-68-7757-01 1 161518241 161518241 T C FCGR3A Missense_Mutation p.S133G 0.08 deleterious(0) probably_damaging(0.999) TCGA-68-7757-01 1 16895612 16895612 T A NBPF1 Missense_Mutation p.H857L 0.05 tolerated(0.68) possibly_damaging(0.553) TCGA-68-7757-01 1 175067500 175067500 C A TNN Silent p.R630R 0.15 TCGA-68-7757-01 1 177001879 177001879 G T ASTN1 Missense_Mutation p.A193D 0.08 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-68-7757-01 1 192335127 192335127 C A RGS21 Missense_Mutation p.A111D 0.17 deleterious(0) probably_damaging(1) TCGA-68-7757-01 1 201869658 201869658 G T LMOD1 Silent p.G161G 0.19 TCGA-68-7757-01 1 206230904 206230904 T C AVPR1B Missense_Mutation p.L346S 0.17 deleterious(0) benign(0.398) TCGA-68-7757-01 1 209963897 209963897 T G IRF6 Missense_Mutation p.N335H 0.22 deleterious(0.01) probably_damaging(1) TCGA-68-7757-01 1 231155709 231155709 T A FAM89A Missense_Mutation p.Q152L 0.13 deleterious(0.03) benign(0.24) TCGA-68-7757-01 1 237758895 237758895 G T RYR2 Missense_Mutation p.D1512Y 0.15 probably_damaging(1) TCGA-68-7757-01 1 240371329 240371329 G A FMN2 Missense_Mutation p.G1073S 0.12 unknown(0) TCGA-68-7757-01 1 247769787 247769787 T A OR2G3 Silent p.A300A 0.18 TCGA-68-7757-01 1 247875502 247875502 C T OR6F1 Missense_Mutation p.A186T 0.09 tolerated(0.59) benign(0.007) TCGA-68-7757-01 1 248202111 248202111 C A OR2L2 Missense_Mutation p.P181Q 0.16 deleterious(0.02) probably_damaging(0.989) TCGA-68-7757-01 1 248551384 248551384 C G OR2T6 Missense_Mutation p.L159V 0.11 tolerated(0.1) probably_damaging(0.958) TCGA-68-7757-01 1 248616362 248616362 C G OR2T2 Silent p.S88S 0.08 TCGA-68-7757-01 1 25228956 25228956 C A RUNX3 Missense_Mutation p.R316L 0.27 tolerated(0.1) benign(0.028) TCGA-68-7757-01 1 27876394 27876394 G A AHDC1 Missense_Mutation p.R745W 0.08 deleterious(0) possibly_damaging(0.835) TCGA-68-7757-01 1 32660529 32660529 G T TXLNA Missense_Mutation p.E458D 0.13 tolerated(0.07) benign(0.049) TCGA-68-7757-01 1 36886185 36886185 T A OSCP1 Missense_Mutation p.E284V 0.23 deleterious(0.01) possibly_damaging(0.835) TCGA-68-7757-01 1 39776634 39776634 G A MACF1 Missense_Mutation p.A1083T 0.09 benign(0.007) TCGA-68-7757-01 1 47515870 47515870 G A CYP4X1 3'UTR 0.24 TCGA-68-7757-01 1 51032864 51032864 C A FAF1 Missense_Mutation p.V385L 0.25 deleterious(0.01) benign(0.229) TCGA-68-7757-01 1 52926896 52926896 C A ZCCHC11 Splice_Site p.X1078_splice 0.17 TCGA-68-7757-01 1 52943484 52943484 T C ZCCHC11 Missense_Mutation p.Y640C 0.16 deleterious(0) probably_damaging(0.967) TCGA-68-7757-01 1 53493666 53493666 G T SCP2 Missense_Mutation p.A421S 0.10 tolerated(0.24) benign(0.427) TCGA-68-7757-01 1 57341787 57341787 T A C8A Missense_Mutation p.D123E 0.24 deleterious(0) probably_damaging(0.999) TCGA-68-7757-01 1 57341788 57341788 G T C8A Missense_Mutation p.G124C 0.24 deleterious(0.02) probably_damaging(0.992) TCGA-68-7757-01 1 6674148 6674148 G A PHF13 Missense_Mutation p.A8T 0.05 tolerated(0.51) benign(0.006) TCGA-68-7757-01 1 75685012 75685012 C A SLC44A5 Missense_Mutation p.G399V 0.04 deleterious(0) probably_damaging(1) TCGA-68-7757-01 1 87805812 87805812 A T LMO4 Missense_Mutation p.H139L 0.12 tolerated(0.07) benign(0.078) TCGA-68-7757-01 1 92769600 92769600 G T RPAP2 Missense_Mutation p.G101C 0.13 deleterious(0) probably_damaging(1) TCGA-68-7757-01 20 16359525 16359525 C T KIF16B Missense_Mutation p.S1041N 0.18 tolerated_low_confidence(0.22) benign(0.012) TCGA-68-7757-01 20 18377170 18377170 G A DZANK1 Silent p.H519H 0.14 TCGA-68-7757-01 20 1961039 1961039 C A PDYN Missense_Mutation p.R232L 0.15 deleterious(0) probably_damaging(0.95) TCGA-68-7757-01 20 2474176 2474176 C A ZNF343 Missense_Mutation p.A56S 0.12 tolerated(0.17) benign(0) TCGA-68-7757-01 20 42225160 42225160 G T IFT52 Nonsense_Mutation p.E69* 0.13 TCGA-68-7757-01 20 44037177 44037177 G C DBNDD2 Missense_Mutation p.E126Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-68-7757-01 20 58490245 58490245 C A SYCP2 Missense_Mutation p.M203I 0.17 deleterious(0) possibly_damaging(0.544) TCGA-68-7757-01 21 19653367 19653367 C T TMPRSS15 Silent p.V886V 0.11 TCGA-68-7757-01 21 22910201 22910201 G T NCAM2 Missense_Mutation p.A813S 0.20 tolerated(0.72) benign(0.005) TCGA-68-7757-01 21 45959307 45959307 C T KRTAP10-1 Missense_Mutation p.A243T 0.17 tolerated(0.14) unknown(0) TCGA-68-7757-01 22 19754204 19754204 G T TBX1 Silent p.A434A 0.26 TCGA-68-7757-01 22 23438119 23438119 C A GNAZ Missense_Mutation p.D79E 0.18 deleterious(0.03) possibly_damaging(0.507) TCGA-68-7757-01 22 30772644 30772644 C T CCDC157 Silent p.P723P 0.11 TCGA-68-7757-01 22 35813846 35813846 G T MCM5 Missense_Mutation p.R567L 0.20 deleterious(0) probably_damaging(0.983) TCGA-68-7757-01 22 36124937 36124937 C A APOL5 Silent p.R432R 0.18 TCGA-68-7757-01 22 40055037 40055037 G A CACNA1I Missense_Mutation p.R749Q 0.19 tolerated(0.37) possibly_damaging(0.553) TCGA-68-7757-01 2 108917374 108917374 T C SULT1C2 Missense_Mutation p.W131R 0.19 deleterious(0) probably_damaging(0.995) TCGA-68-7757-01 2 112944722 112944722 G C FBLN7 Missense_Mutation p.R320P 0.25 deleterious(0.02) probably_damaging(1) TCGA-68-7757-01 2 141259425 141259425 G C LRP1B Nonsense_Mutation p.S2894* 0.10 TCGA-68-7757-01 2 149226383 149226384 - T MBD5 Frame_Shift_Ins p.M291Ifs*6 0.12 TCGA-68-7757-01 2 165353774 165353774 A C GRB14 Missense_Mutation p.L414R 0.14 deleterious(0.02) benign(0.285) TCGA-68-7757-01 2 166892699 166892699 A C SCN1A Missense_Mutation p.I1096M 0.17 tolerated(0.3) benign(0.073) TCGA-68-7757-01 2 166903394 166903394 C A SCN1A Silent p.V421V 0.18 TCGA-68-7757-01 2 176958292 176958292 C G HOXD13 Missense_Mutation p.S225C 0.17 deleterious(0) possibly_damaging(0.785) TCGA-68-7757-01 2 176981857 176981857 C A HOXD10 Missense_Mutation p.P99H 0.11 deleterious(0) probably_damaging(0.979) TCGA-68-7757-01 2 178705006 178705006 G T PDE11A Missense_Mutation p.A491D 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-68-7757-01 2 179500908 179500908 G T TTN Missense_Mutation p.P13797Q 0.14 TCGA-68-7757-01 2 179604619 179604619 C T TTN Silent p.S4447S 0.20 TCGA-68-7757-01 2 179640383 179640383 C A TTN Nonsense_Mutation p.E2070* 0.11 TCGA-68-7757-01 2 191874681 191874681 G C STAT1 Missense_Mutation p.Q17E 0.18 deleterious(0) benign(0.404) TCGA-68-7757-01 2 198338497 198338497 G T COQ10B Missense_Mutation p.R189L 0.13 deleterious(0) probably_damaging(0.999) TCGA-68-7757-01 2 207175144 207175144 G - ZDBF2 Frame_Shift_Del p.E1965Kfs*36 0.08 TCGA-68-7757-01 2 211460253 211460253 G C CPS1 Missense_Mutation p.G442R 0.11 deleterious(0) probably_damaging(1) TCGA-68-7757-01 2 212248356 212248356 C A ERBB4 Missense_Mutation p.R1304L 0.10 deleterious_low_confidence(0) possibly_damaging(0.844) TCGA-68-7757-01 2 219209529 219209529 A G PNKD Splice_Site p.X329_splice 0.15 TCGA-68-7757-01 2 225652058 225652058 T C DOCK10 Silent p.R1825R 0.18 TCGA-68-7757-01 2 233625285 233625285 C T GIGYF2 Nonsense_Mutation p.Q159* 0.12 TCGA-68-7757-01 2 241710465 241710465 G A KIF1A Missense_Mutation p.R422C 0.15 deleterious(0.04) probably_damaging(0.992) TCGA-68-7757-01 2 24974934 24974934 C T NCOA1 Nonsense_Mutation p.Q1264* 0.10 TCGA-68-7757-01 2 27436047 27436047 A G ATRAID Missense_Mutation p.I89M 0.08 deleterious(0) probably_damaging(0.932) TCGA-68-7757-01 2 27729715 27729715 C A GCKR Silent p.I343I 0.17 TCGA-68-7757-01 2 42396743 42396743 C - EML4 5'UTR 0.10 TCGA-68-7757-01 2 47748932 47748932 G T KCNK12 Missense_Mutation p.T136N 0.29 deleterious(0.02) possibly_damaging(0.838) TCGA-68-7757-01 2 80085209 80085209 G T CTNNA2 Missense_Mutation p.M123I 0.17 tolerated(0.05) possibly_damaging(0.673) TCGA-68-7757-01 2 90078162 90078162 C A IGKV3D-20 Missense_Mutation p.L67I 0.17 deleterious(0.02) probably_damaging(0.947) TCGA-68-7757-01 3 112546218 112546218 C T CD200R1L Silent p.V142V 0.12 TCGA-68-7757-01 3 112564647 112564647 G C CD200R1L 5'UTR 0.16 TCGA-68-7757-01 3 113128042 113128042 C - WDR52 Frame_Shift_Del p.T268Qfs*47 0.08 TCGA-68-7757-01 3 148583101 148583101 C A CPA3 Missense_Mutation p.L3I 0.20 tolerated(0.3) benign(0.003) TCGA-68-7757-01 3 150931781 150931781 G T P2RY14 Missense_Mutation p.S108R 0.16 deleterious(0.03) probably_damaging(0.912) TCGA-68-7757-01 3 155208647 155208647 G T PLCH1 Missense_Mutation p.P761H 0.16 deleterious(0) probably_damaging(1) TCGA-68-7757-01 3 158531839 158531839 G T MFSD1 Missense_Mutation p.G261V 0.07 deleterious(0) benign(0.037) TCGA-68-7757-01 3 164780177 164780177 T A SI Silent p.V334V 0.07 TCGA-68-7757-01 3 170078081 170078081 G A SKIL 5'UTR 0.11 TCGA-68-7757-01 3 178742995 178742995 C T ZMAT3 Missense_Mutation p.R227H 0.27 deleterious(0) probably_damaging(0.987) TCGA-68-7757-01 3 178936083 178936083 A T PIK3CA Missense_Mutation p.E542V 0.07 deleterious(0.01) probably_damaging(0.987) TCGA-68-7757-01 3 184101383 184101383 C T CHRD Missense_Mutation p.R465C 0.12 deleterious(0) probably_damaging(0.943) TCGA-68-7757-01 3 186015964 186015964 G T DGKG Missense_Mutation p.L67I 0.14 tolerated(0.74) benign(0.058) TCGA-68-7757-01 3 193372669 193372669 A G OPA1 Silent p.Q659Q 0.11 TCGA-68-7757-01 3 197348719 197348719 C A AC024560.3 RNA 0.16 TCGA-68-7757-01 3 197748441 197748441 G T LMLN Missense_Mutation p.R534L 0.16 deleterious(0) benign(0.413) TCGA-68-7757-01 3 38888670 38888670 C - SCN11A Frame_Shift_Del p.E1631Kfs*38 0.11 TCGA-68-7757-01 3 51425256 51425256 A T MANF Missense_Mutation p.K104M 0.13 deleterious(0) probably_damaging(0.986) TCGA-68-7757-01 3 56115010 56115010 T A ERC2 Silent p.V492V 0.19 TCGA-68-7757-01 3 68055705 68055705 G A FAM19A1 Intron 0.12 TCGA-68-7757-01 3 96706482 96706482 G T EPHA6 Missense_Mutation p.Q253H 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-68-7757-01 4 107115904 107115904 G C TBCK Missense_Mutation p.A623G 0.27 deleterious(0.01) probably_damaging(0.987) TCGA-68-7757-01 4 114275992 114275992 T C ANK2 Missense_Mutation p.I2073T 0.24 benign(0.003) TCGA-68-7757-01 4 134084176 134084176 G T PCDH10 Missense_Mutation p.G948C 0.13 deleterious(0.01) probably_damaging(1) TCGA-68-7757-01 4 156289701 156289701 C A MAP9 Intron 0.27 TCGA-68-7757-01 4 16590362 16590362 A T LDB2 Missense_Mutation p.L168I 0.10 deleterious(0.04) benign(0.364) TCGA-68-7757-01 4 170189999 170189999 C A SH3RF1 Missense_Mutation p.R122L 0.15 tolerated(0.1) probably_damaging(0.998) TCGA-68-7757-01 4 17528546 17528546 G T CLRN2 Silent p.V180V 0.24 TCGA-68-7757-01 4 177094455 177094455 A T WDR17 Silent p.I1133I 0.25 TCGA-68-7757-01 4 42119648 42119648 G A BEND4 Missense_Mutation p.R498W 0.18 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-68-7757-01 4 47574221 47574221 G T ATP10D Missense_Mutation p.G1072W 0.15 deleterious(0) probably_damaging(0.994) TCGA-68-7757-01 4 53468182 53468182 T G USP46 Missense_Mutation p.H254P 0.09 deleterious(0) probably_damaging(0.996) TCGA-68-7757-01 4 62845304 62845304 C A LPHN3 Silent p.L875L 0.21 TCGA-68-7757-01 4 70596263 70596263 G T SULT1B1 Missense_Mutation p.P245Q 0.09 deleterious(0) possibly_damaging(0.842) TCGA-68-7757-01 4 8470083 8470083 C T TRMT44 Intron 0.20 TCGA-68-7757-01 5 101709131 101709131 T C SLCO6A1 Silent p.L695L 0.17 TCGA-68-7757-01 5 129015465 129015465 G T ADAMTS19 Missense_Mutation p.D833Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-68-7757-01 5 131671648 131671648 G T SLC22A4 Missense_Mutation p.A467S 0.18 tolerated(0.06) benign(0.034) TCGA-68-7757-01 5 1432750 1432750 G A SLC6A3 Missense_Mutation p.A161V 0.23 deleterious(0) possibly_damaging(0.864) TCGA-68-7757-01 5 158126069 158126069 T C EBF1 3'UTR 0.15 TCGA-68-7757-01 5 176636892 176636892 C T NSD1 Nonsense_Mutation p.R498* 0.21 TCGA-68-7757-01 5 33937538 33937538 C G RXFP3 Silent p.P231P 0.13 TCGA-68-7757-01 6 105606585 105606585 C A POPDC3 Missense_Mutation p.W212C 0.20 deleterious(0) probably_damaging(1) TCGA-68-7757-01 6 105606586 105606586 C A POPDC3 Missense_Mutation p.W212L 0.20 deleterious(0) probably_damaging(1) TCGA-68-7757-01 6 127648239 127648239 T C ECHDC1 Missense_Mutation p.T97A 0.35 tolerated(0.35) benign(0.005) TCGA-68-7757-01 6 150016267 150016267 G A LATS1 Nonsense_Mutation p.R147* 0.24 TCGA-68-7757-01 6 152647600 152647600 C A SYNE1 Nonsense_Mutation p.E5042* 0.35 TCGA-68-7757-01 6 152702267 152702267 T A SYNE1 Missense_Mutation p.Q2961H 0.31 possibly_damaging(0.896) TCGA-68-7757-01 6 155577925 155577925 C G TIAM2 Missense_Mutation p.F1592L 0.35 tolerated(0.28) benign(0.147) TCGA-68-7757-01 6 160176551 160176551 G T WTAP Missense_Mutation p.A367S 0.24 tolerated_low_confidence(0.59) benign(0.022) TCGA-68-7757-01 6 161016543 161016543 C A LPA Missense_Mutation p.R1104S 0.16 deleterious(0) probably_damaging(0.99) TCGA-68-7757-01 6 161016544 161016544 C A LPA Missense_Mutation p.R1104M 0.16 deleterious(0) probably_damaging(0.993) TCGA-68-7757-01 6 22569839 22569839 G T HDGFL1 Missense_Mutation p.G12V 0.06 deleterious(0) probably_damaging(1) TCGA-68-7757-01 6 26056402 26056402 C G HIST1H1C Missense_Mutation p.K85N 0.09 deleterious(0) probably_damaging(0.988) TCGA-68-7757-01 6 311880 311880 A T DUSP22 Missense_Mutation p.D19V 0.12 deleterious(0) probably_damaging(1) TCGA-68-7757-01 6 32047076 32047076 G T RNA5SP206 5'Flank 0.32 TCGA-68-7757-01 6 33411640 33411640 C T SYNGAP1 Missense_Mutation p.P1104L 0.15 tolerated(0.97) benign(0.002) TCGA-68-7757-01 6 36297903 36297903 C A C6orf222 Missense_Mutation p.A189S 0.22 tolerated(0.09) benign(0.021) TCGA-68-7757-01 6 49937290 49937290 C A DEFB113 Missense_Mutation p.G17C 0.20 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-68-7757-01 6 56462665 56462665 T G DST Missense_Mutation p.Q1400P 0.24 benign(0) TCGA-68-7757-01 6 7580133 7580133 A T DSP Missense_Mutation p.N1237I 0.18 benign(0.001) TCGA-68-7757-01 6 89890171 89890171 G A GABRR1 Missense_Mutation p.T329M 0.26 deleterious(0) probably_damaging(0.997) TCGA-68-7757-01 7 103202391 103202391 C A RELN Missense_Mutation p.R1740S 0.13 tolerated(0.29) probably_damaging(0.992) TCGA-68-7757-01 7 103205917 103205917 C A RELN Missense_Mutation p.S1673I 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-68-7757-01 7 103276843 103276843 G T RELN Missense_Mutation p.S714R 0.15 tolerated(0.18) possibly_damaging(0.791) TCGA-68-7757-01 7 106509821 106509821 C G PIK3CG Silent p.A605A 0.15 TCGA-68-7757-01 7 121674335 121674335 G T PTPRZ1 Splice_Site p.X1730_splice 0.12 TCGA-68-7757-01 7 121674336 121674336 G C PTPRZ1 Missense_Mutation p.E1730Q 0.11 deleterious(0) possibly_damaging(0.799) TCGA-68-7757-01 7 126410054 126410054 C A GRM8 Missense_Mutation p.A408S 0.17 deleterious(0.03) probably_damaging(0.996) TCGA-68-7757-01 7 127251724 127251724 G T PAX4 Missense_Mutation p.P252T 0.21 tolerated(0.07) benign(0.024) TCGA-68-7757-01 7 141796187 141796187 C A MGAM Missense_Mutation p.A1659D 0.18 deleterious(0) probably_damaging(0.944) TCGA-68-7757-01 7 142564298 142564298 T C EPHB6 Missense_Mutation p.W508R 0.13 deleterious(0.01) probably_damaging(1) TCGA-68-7757-01 7 143043271 143043271 C A CLCN1 Silent p.A737A 0.08 TCGA-68-7757-01 7 150553888 150553888 T A AOC1 Missense_Mutation p.N110K 0.18 deleterious(0.05) possibly_damaging(0.744) TCGA-68-7757-01 7 151962165 151962165 G T KMT2C Missense_Mutation p.A381E 0.03 probably_damaging(0.999) TCGA-68-7757-01 7 17379334 17379334 C A AHR Missense_Mutation p.Q629K 0.12 tolerated_low_confidence(0.2) benign(0.001) TCGA-68-7757-01 7 31690796 31690796 A G CCDC129 Missense_Mutation p.Q901R 0.17 tolerated(0.09) benign(0.379) TCGA-68-7757-01 7 32598730 32598730 C A AVL9 Missense_Mutation p.A290D 0.27 tolerated(0.34) benign(0.112) TCGA-68-7757-01 7 36194396 36194396 G T EEPD1 Nonsense_Mutation p.E155* 0.17 TCGA-68-7757-01 7 38289003 38289003 G A TRGC2 Nonsense_Mutation p.Q58* 0.14 TCGA-68-7757-01 7 38289004 38289004 G C TRGC2 Silent p.S57S 0.14 TCGA-68-7757-01 7 4259903 4259903 G A SDK1 Splice_Site p.X1901_splice 0.11 TCGA-68-7757-01 7 47454723 47454723 G C TNS3 Silent p.L185L 0.19 TCGA-68-7757-01 7 4901201 4901201 T A PAPOLB Missense_Mutation p.S80C 0.19 deleterious(0.02) probably_damaging(0.963) TCGA-68-7757-01 7 70853340 70853340 C A WBSCR17 Missense_Mutation p.T181K 0.14 tolerated(0.17) benign(0.042) TCGA-68-7757-01 7 73249195 73249195 T A WBSCR27 Missense_Mutation p.T206S 0.10 tolerated_low_confidence(0.68) benign(0) TCGA-68-7757-01 7 75070253 75070253 T G POM121C Missense_Mutation p.D69A 0.13 deleterious(0) benign(0.19) TCGA-68-7757-01 7 75616904 75616904 C G POR 3'Flank 0.18 TCGA-68-7757-01 7 81599277 81599277 T A CACNA2D1 Missense_Mutation p.N743I 0.13 deleterious(0.01) possibly_damaging(0.739) TCGA-68-7757-01 7 94033867 94033867 G T COL1A2 Splice_Site p.X94_splice 0.10 TCGA-68-7757-01 7 94033868 94033868 G T COL1A2 Missense_Mutation p.G94C 0.10 unknown(0) TCGA-68-7757-01 8 133045408 133045408 G T OC90 Missense_Mutation p.S246Y 0.17 deleterious(0) probably_damaging(0.986) TCGA-68-7757-01 8 139155264 139155264 G T FAM135B Missense_Mutation p.S1210Y 0.12 deleterious(0) probably_damaging(0.934) TCGA-68-7757-01 8 143694552 143694552 G C ARC Missense_Mutation p.Q361E 0.41 tolerated_low_confidence(0.36) benign(0) TCGA-68-7757-01 8 144946555 144946555 C A EPPK1 Silent p.G289G 0.16 TCGA-68-7757-01 8 20069161 20069161 A G ATP6V1B2 Splice_Site p.X202_splice 0.09 TCGA-68-7757-01 8 21959800 21959800 A T FAM160B2 Missense_Mutation p.R656W 0.14 deleterious(0) probably_damaging(0.996) TCGA-68-7757-01 8 22584723 22584723 A T PEBP4 Missense_Mutation p.L123Q 0.21 deleterious(0) probably_damaging(0.964) TCGA-68-7757-01 8 37996362 37996362 A G ASH2L Missense_Mutation p.K583R 0.31 tolerated(0.12) benign(0.042) TCGA-68-7757-01 8 39442187 39442187 G T ADAM18 Missense_Mutation p.A16S 0.23 tolerated(0.11) benign(0.331) TCGA-68-7757-01 8 55533980 55533980 C A RP1 Missense_Mutation p.P152T 0.09 tolerated(0.88) benign(0.007) TCGA-68-7757-01 8 68992768 68992768 T G PREX2 Missense_Mutation p.L578R 0.21 tolerated(0.11) benign(0.109) TCGA-68-7757-01 8 72967707 72967707 A G TRPA1 Missense_Mutation p.V498A 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-68-7757-01 8 74585448 74585448 C A STAU2 Missense_Mutation p.G102W 0.12 deleterious(0) probably_damaging(1) TCGA-68-7757-01 8 75761443 75761443 G T PI15 Silent p.L244L 0.17 TCGA-68-7757-01 8 7686388 7686388 C A DEFB106A Nonsense_Mutation p.C37* 0.16 TCGA-68-7757-01 8 77765604 77765604 C A ZFHX4 Missense_Mutation p.D2149E 0.12 probably_damaging(0.98) TCGA-68-7757-01 8 77776525 77776525 C A ZFHX4 Silent p.S3525S 0.21 TCGA-68-7757-01 8 8176083 8176083 C G SGK223 Missense_Mutation p.E1268Q 0.21 probably_damaging(0.997) TCGA-68-7757-01 8 87076308 87076308 C A PSKH2 Missense_Mutation p.W246C 0.15 deleterious(0) probably_damaging(1) TCGA-68-7757-01 9 105766982 105766982 T C CYLC2 Silent p.I62I 0.36 TCGA-68-7757-01 9 115652143 115652143 A T SLC46A2 Silent p.P273P 0.32 TCGA-68-7757-01 9 117092855 117092855 C A ORM2 Missense_Mutation p.R86S 0.10 tolerated(0.27) benign(0.059) TCGA-68-7757-01 9 119097268 119097268 G A PAPPA Missense_Mutation p.V1176M 0.26 deleterious(0) possibly_damaging(0.608) TCGA-68-7757-01 9 139008608 139008608 T A C9orf69 Missense_Mutation p.T47S 0.17 tolerated(0.87) benign(0) TCGA-68-7757-01 9 18707026 18707026 G C ADAMTSL1 Missense_Mutation p.C619S 0.15 deleterious(0) probably_damaging(0.999) TCGA-68-7757-01 9 19336284 19336284 C T DENND4C Missense_Mutation p.P869L 0.14 tolerated(0.07) possibly_damaging(0.586) TCGA-68-7757-01 9 21141297 21141297 G T IFNW1 Missense_Mutation p.F91L 0.17 tolerated(0.06) benign(0.329) TCGA-68-7757-01 9 21305029 21305029 G T IFNA5 Missense_Mutation p.A76D 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-68-7757-01 9 37746747 37746747 G T FRMPD1 Missense_Mutation p.R1573L 0.24 deleterious(0) possibly_damaging(0.578) TCGA-68-7757-01 9 5078340 5078340 C A JAK2 Missense_Mutation p.A676D 0.21 deleterious(0) possibly_damaging(0.697) TCGA-68-7757-01 X 102962375 102962375 G T GLRA4 Missense_Mutation p.A384E 0.26 tolerated_low_confidence(0.55) benign(0.009) TCGA-68-7757-01 X 119005282 119005282 C A RNF113A Missense_Mutation p.V99F 0.28 tolerated(0.34) benign(0.003) TCGA-68-7757-01 X 2729376 2729376 G T XG Splice_Site p.X152_splice 0.24 TCGA-68-7757-01 X 48847493 48847493 C A GRIPAP1 Missense_Mutation p.G163W 0.19 possibly_damaging(0.792) TCGA-68-7757-01 X 50351137 50351137 T C SHROOM4 Missense_Mutation p.H1002R 0.17 tolerated(0.74) benign(0.002) TCGA-68-7757-01 X 51644786 51644786 G T MAGED1 Missense_Mutation p.E755D 0.52 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-68-7757-01 X 6069499 6069499 C A NLGN4X Silent p.R3R 0.25 TCGA-68-7757-01 X 70643897 70643897 A T TAF1 Missense_Mutation p.D1570V 0.11 deleterious(0) probably_damaging(1) TCGA-68-7757-01 X 76872107 76872107 T C ATRX Missense_Mutation p.Y1847C 0.35 probably_damaging(1) TCGA-68-7757-01 X 84362652 84362652 C A SATL1 Missense_Mutation p.M441I 0.33 tolerated(0.2) benign(0.257) TCGA-68-7757-01 X 84510348 84510348 G T ZNF711 Missense_Mutation p.V55F 0.36 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-68-7757-01 Y 4900731 4900731 G T PCDH11Y 5'UTR 0.35 TCGA-68-8250-01 10 105331443 105331443 G T NEURL1 Missense_Mutation p.W171C 0.54 deleterious(0) probably_damaging(0.999) TCGA-68-8250-01 10 106118299 106118299 G T CCDC147 Missense_Mutation p.E70D 0.56 tolerated(0.05) possibly_damaging(0.86) TCGA-68-8250-01 10 107005424 107005424 G C SORCS3 Splice_Site p.X998_splice 0.30 TCGA-68-8250-01 10 123970661 123970661 G T TACC2 Nonsense_Mutation p.E2241* 0.51 TCGA-68-8250-01 10 126086513 126086513 A T OAT Nonstop_Mutation p.*440Rext*2 0.56 TCGA-68-8250-01 10 15115107 15115107 G C OLAH Missense_Mutation p.G279A 0.49 deleterious(0) probably_damaging(1) TCGA-68-8250-01 10 16979694 16979694 C T CUBN Silent p.L1941L 0.39 TCGA-68-8250-01 10 27306551 27306551 T A ANKRD26 Missense_Mutation p.R1462S 0.48 deleterious(0) benign(0.085) TCGA-68-8250-01 10 38403765 38403765 A G ZNF37A Missense_Mutation p.Y33C 0.33 deleterious(0) probably_damaging(0.996) TCGA-68-8250-01 10 55582982 55582982 G T PCDH15 Missense_Mutation p.L1504I 0.42 deleterious_low_confidence(0.02) benign(0.41) TCGA-68-8250-01 10 5690937 5690937 A C ASB13 Missense_Mutation p.N171K 0.44 tolerated(0.38) benign(0.015) TCGA-68-8250-01 11 116662553 116662553 G C APOA5 Silent p.L8L 0.25 TCGA-68-8250-01 11 123901083 123901083 G T OR10G8 Missense_Mutation p.G252C 0.22 deleterious(0.03) probably_damaging(0.918) TCGA-68-8250-01 11 128933883 128933883 C A ARHGAP32 Nonsense_Mutation p.E253* 0.29 TCGA-68-8250-01 11 130275933 130275933 C A ADAMTS8 Silent p.G730G 0.15 TCGA-68-8250-01 11 134215023 134215023 G T GLB1L2 Missense_Mutation p.S150I 0.29 deleterious(0) probably_damaging(0.989) TCGA-68-8250-01 11 16776628 16776628 T G C11orf58 Missense_Mutation p.F177V 0.24 deleterious(0) probably_damaging(0.996) TCGA-68-8250-01 11 18231255 18231255 G T RP11-113D6.10 Missense_Mutation p.S14I 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.774) TCGA-68-8250-01 11 18745708 18745708 G C IGSF22 Missense_Mutation p.Q26E 0.21 deleterious_low_confidence(0.01) benign(0.078) TCGA-68-8250-01 11 194498 194498 C A SCGB1C1 3'UTR 0.29 TCGA-68-8250-01 11 20177884 20177884 G C DBX1 Missense_Mutation p.P342R 0.14 deleterious_low_confidence(0.02) benign(0.383) TCGA-68-8250-01 11 284373 284373 G A NLRP6 Nonsense_Mutation p.W782* 0.11 TCGA-68-8250-01 11 43284089 43284089 G T HNRNPKP3 RNA 0.50 TCGA-68-8250-01 11 46840036 46840036 T C CKAP5 Missense_Mutation p.S26G 0.26 tolerated(0.14) benign(0.066) TCGA-68-8250-01 11 47591360 47591360 C T PTPMT1 Nonsense_Mutation p.Q122* 0.14 TCGA-68-8250-01 11 55681823 55681823 G T OR5W2 Missense_Mutation p.P79H 0.20 deleterious(0) probably_damaging(0.998) TCGA-68-8250-01 11 55999760 55999760 G T OR5T2 Missense_Mutation p.P301Q 0.19 deleterious(0) possibly_damaging(0.841) TCGA-68-8250-01 11 56950112 56950112 C T LRRC55 Missense_Mutation p.P249S 0.04 tolerated(0.52) probably_damaging(0.998) TCGA-68-8250-01 11 57003969 57003969 G T APLNR Silent p.T170T 0.11 TCGA-68-8250-01 11 5878382 5878382 T A OR52E8 Missense_Mutation p.Y184F 0.18 deleterious(0) probably_damaging(1) TCGA-68-8250-01 11 6519999 6519999 T A DNHD1 Missense_Mutation p.L185Q 0.20 possibly_damaging(0.494) TCGA-68-8250-01 11 65408849 65408849 G T SIPA1 Missense_Mutation p.A153S 0.18 tolerated(0.18) benign(0.001) TCGA-68-8250-01 11 65766113 65766113 T C EIF1AD Missense_Mutation p.Y152C 0.21 deleterious(0.01) possibly_damaging(0.708) TCGA-68-8250-01 11 6648687 6648687 C A DCHS1 Silent p.S1861S 0.23 TCGA-68-8250-01 11 6898570 6898570 C G OR10A4 Nonsense_Mutation p.S231* 0.27 TCGA-68-8250-01 11 73675980 73675980 G T DNAJB13 Missense_Mutation p.R131L 0.15 tolerated(0.08) benign(0.016) TCGA-68-8250-01 11 76637608 76637608 A T ACER3 Silent p.T37T 0.26 TCGA-68-8250-01 11 92623690 92623690 G A FAT3 Missense_Mutation p.G4394E 0.15 benign(0.075) TCGA-68-8250-01 11 9519240 9519240 A G ZNF143 Missense_Mutation p.H287R 0.22 deleterious(0.03) possibly_damaging(0.745) TCGA-68-8250-01 12 100048887 100048887 C A ANKS1B Silent p.P410P 0.18 TCGA-68-8250-01 12 100551485 100551485 G A AC010203.1 5'Flank 0.14 TCGA-68-8250-01 12 101504320 101504320 G T ANO4 Missense_Mutation p.R728M 0.15 deleterious(0) probably_damaging(0.97) TCGA-68-8250-01 12 10206890 10206890 G T CLEC9A Missense_Mutation p.V38L 0.43 tolerated(0.08) benign(0.003) TCGA-68-8250-01 12 11150144 11150144 C T TAS2R20 Missense_Mutation p.V111I 0.05 deleterious(0) benign(0.22) TCGA-68-8250-01 12 112610602 112610602 G A HECTD4 Silent p.D3740D 0.38 TCGA-68-8250-01 12 114823371 114823371 A G TBX5 Missense_Mutation p.I222T 0.20 deleterious(0) probably_damaging(0.998) TCGA-68-8250-01 12 115117771 115117771 C T TBX3 Missense_Mutation p.A222T 0.14 tolerated_low_confidence(0.06) benign(0.025) TCGA-68-8250-01 12 119589018 119589018 G A SRRM4 Missense_Mutation p.E425K 0.27 tolerated_low_confidence(0.33) benign(0.096) TCGA-68-8250-01 12 130184669 130184669 C G TMEM132D Missense_Mutation p.Q218H 0.15 tolerated(0.49) benign(0.012) TCGA-68-8250-01 12 22826532 22826532 G - ETNK1 Frame_Shift_Del p.T385Lfs*8 0.21 TCGA-68-8250-01 12 40114769 40114769 G A C12orf40 Missense_Mutation p.V559M 0.19 tolerated(0.35) benign(0.029) TCGA-68-8250-01 12 48393752 48393752 G C COL2A1 Missense_Mutation p.P81R 0.32 unknown(0) TCGA-68-8250-01 12 4919366 4919366 G C KCNA6 Missense_Mutation p.E53D 0.26 deleterious(0) probably_damaging(0.974) TCGA-68-8250-01 12 49484957 49484957 C A DHH Missense_Mutation p.W173C 0.28 deleterious(0.01) probably_damaging(1) TCGA-68-8250-01 12 51125322 51125322 T G DIP2B Splice_Site p.X1270_splice 0.25 TCGA-68-8250-01 12 57107435 57107435 T C NACA Silent p.T799T 0.24 TCGA-68-8250-01 12 72026742 72026742 C G ZFC3H1 Missense_Mutation p.G914A 0.39 tolerated(0.18) possibly_damaging(0.723) TCGA-68-8250-01 12 80722507 80722507 G A OTOGL Missense_Mutation p.C1412Y 0.14 deleterious(0) probably_damaging(0.997) TCGA-68-8250-01 12 91502270 91502270 A T LUM Missense_Mutation p.F163I 0.19 tolerated(0.63) benign(0.004) TCGA-68-8250-01 12 9847502 9847502 A G CLEC2D 3'UTR 0.27 TCGA-68-8250-01 13 25480619 25480619 C G CENPJ Missense_Mutation p.K519N 0.48 tolerated(0.06) benign(0.086) TCGA-68-8250-01 13 33110059 33110059 C G N4BP2L2 Intron 0.35 TCGA-68-8250-01 13 47469747 47469747 C G HTR2A Missense_Mutation p.V99L 0.06 deleterious(0) probably_damaging(0.998) TCGA-68-8250-01 13 64321214 64321214 G T AL445989.1 Missense_Mutation p.C94F 0.35 unknown(0) TCGA-68-8250-01 14 104643533 104643533 T C KIF26A Missense_Mutation p.S1470P 0.57 deleterious(0.03) benign(0.001) TCGA-68-8250-01 14 106478149 106478149 A G IGHV4-4 Silent p.S103S 0.03 TCGA-68-8250-01 14 20444531 20444531 C T OR4K15 Missense_Mutation p.P285L 0.43 deleterious(0) probably_damaging(1) TCGA-68-8250-01 14 44976013 44976013 T C FSCB Missense_Mutation p.T60A 0.45 tolerated(0.07) benign(0.259) TCGA-68-8250-01 14 50901683 50901683 T C MAP4K5 Missense_Mutation p.I661M 0.40 deleterious(0) possibly_damaging(0.847) TCGA-68-8250-01 14 57088293 57088293 A T TMEM260 Missense_Mutation p.K424M 0.42 deleterious(0.05) possibly_damaging(0.708) TCGA-68-8250-01 14 63447765 63447765 A T KCNH5 Missense_Mutation p.V256D 0.42 deleterious(0) probably_damaging(0.978) TCGA-68-8250-01 14 69814765 69814765 C A GALNT16 Intron 0.30 TCGA-68-8250-01 14 73140984 73140984 C T DPF3 Missense_Mutation p.E279K 0.31 deleterious(0.02) benign(0.001) TCGA-68-8250-01 15 22472959 22472959 A G IGHV4OR15-8 Silent p.S104S 0.10 TCGA-68-8250-01 15 22851005 22851005 G T TUBGCP5 Missense_Mutation p.V423F 0.38 deleterious(0) probably_damaging(0.99) TCGA-68-8250-01 15 59806505 59806505 A T FAM81A Missense_Mutation p.E223V 0.48 deleterious(0.02) probably_damaging(0.966) TCGA-68-8250-01 15 62214661 62214661 T C VPS13C Missense_Mutation p.K2304E 0.47 tolerated(0.08) benign(0.044) TCGA-68-8250-01 15 83455724 83455724 G C FSD2 Missense_Mutation p.A140G 0.15 tolerated(0.26) benign(0.098) TCGA-68-8250-01 15 89392851 89392851 C A ACAN Missense_Mutation p.P639T 0.11 deleterious(0) unknown(0) TCGA-68-8250-01 16 2115583 2115583 G T TSC2 Missense_Mutation p.A555S 0.52 tolerated(0.33) benign(0.062) TCGA-68-8250-01 16 2168150 2168150 G C PKD1 Missense_Mutation p.H281Q 0.67 benign(0.001) TCGA-68-8250-01 16 25704443 25704443 G T HS3ST4 Missense_Mutation p.R235S 0.35 deleterious(0) possibly_damaging(0.82) TCGA-68-8250-01 16 3293158 3293158 C A MEFV Missense_Mutation p.G777C 0.45 tolerated(0.1) benign(0.011) TCGA-68-8250-01 16 88876892 88876892 C T APRT Missense_Mutation p.R87Q 0.24 deleterious(0) probably_damaging(1) TCGA-68-8250-01 17 17772812 17772812 T A TOM1L2 Intron 0.26 TCGA-68-8250-01 17 19015787 19015787 T C SNORD3D RNA 0.10 TCGA-68-8250-01 17 27446362 27446362 C T MYO18A Missense_Mutation p.G607D 0.12 tolerated(0.23) benign(0.054) TCGA-68-8250-01 17 33481710 33481710 C A UNC45B Missense_Mutation p.L197M 0.52 deleterious(0.01) probably_damaging(0.954) TCGA-68-8250-01 17 45895940 45895940 G C OSBPL7 Missense_Mutation p.R138G 0.19 tolerated(0.06) possibly_damaging(0.655) TCGA-68-8250-01 17 46621981 46621981 A T HOXB2 Missense_Mutation p.M98K 0.49 deleterious(0) probably_damaging(0.993) TCGA-68-8250-01 17 46629605 46629605 G C HOXB3 Missense_Mutation p.L78V 0.59 tolerated(0.19) possibly_damaging(0.576) TCGA-68-8250-01 17 51900818 51900818 A T KIF2B Missense_Mutation p.M142L 0.54 tolerated(0.72) benign(0.006) TCGA-68-8250-01 17 7150400 7150400 G C CTDNEP1 Missense_Mutation p.P91A 0.11 tolerated(0.19) benign(0.327) TCGA-68-8250-01 17 7579377 7579377 G A TP53 Nonsense_Mutation p.Q104* 0.58 TCGA-68-8250-01 17 9820459 9820459 G A GAS7 3'UTR 0.62 TCGA-68-8250-01 18 10677852 10677852 T G PIEZO2 Missense_Mutation p.K2545T 0.10 tolerated(0.42) possibly_damaging(0.564) TCGA-68-8250-01 18 10697821 10697821 T G PIEZO2 Missense_Mutation p.Q2138P 0.23 tolerated(0.11) benign(0.002) TCGA-68-8250-01 18 21417051 21417051 C T LAMA3 Silent p.L1031L 0.32 TCGA-68-8250-01 18 22804653 22804653 T A ZNF521 Nonsense_Mutation p.K1077* 0.16 TCGA-68-8250-01 18 22807624 22807624 C A ZNF521 Missense_Mutation p.W86C 0.14 deleterious_low_confidence(0) possibly_damaging(0.894) TCGA-68-8250-01 18 28971176 28971176 G T DSG4 Splice_Site p.X273_splice 0.14 TCGA-68-8250-01 18 40695441 40695441 G A RIT2 Missense_Mutation p.S15L 0.32 deleterious(0.05) benign(0.035) TCGA-68-8250-01 18 43252998 43252998 T C SLC14A2 Missense_Mutation p.M788T 0.16 deleterious(0.01) benign(0.122) TCGA-68-8250-01 18 54814946 54814946 C T BOD1L2 Nonsense_Mutation p.Q135* 0.18 TCGA-68-8250-01 18 67759360 67759360 C A RTTN Missense_Mutation p.D1377Y 0.17 tolerated(0.13) probably_damaging(0.992) TCGA-68-8250-01 18 6961585 6961585 C A LAMA1 Silent p.V2542V 0.17 TCGA-68-8250-01 18 77806046 77806046 T G RBFA Missense_Mutation p.V308G 0.24 tolerated(0.43) benign(0) TCGA-68-8250-01 19 13419031 13419031 G A CACNA1A Missense_Mutation p.L606F 0.38 probably_damaging(0.986) TCGA-68-8250-01 19 15547852 15547852 G A WIZ Silent p.H98H 0.43 TCGA-68-8250-01 19 17628610 17628610 G C PGLS Missense_Mutation p.R197P 0.40 deleterious(0.01) possibly_damaging(0.88) TCGA-68-8250-01 19 1817227 1817227 G T REXO1 Missense_Mutation p.D1064E 0.06 deleterious(0) probably_damaging(0.999) TCGA-68-8250-01 19 2211123 2211123 G T DOT1L Silent p.P459P 0.41 TCGA-68-8250-01 19 2290942 2290942 C T LINGO3 Silent p.S278S 0.62 TCGA-68-8250-01 19 34890189 34890189 C A GPI Silent p.L460L 0.20 TCGA-68-8250-01 19 36351288 36351288 C T KIRREL2 Missense_Mutation p.P255S 0.42 deleterious(0.01) possibly_damaging(0.85) TCGA-68-8250-01 19 44223942 44223942 C A IRGC Missense_Mutation p.P411Q 0.47 tolerated_low_confidence(0.26) benign(0.027) TCGA-68-8250-01 19 4453499 4453499 C T UBXN6 Missense_Mutation p.E90K 0.50 deleterious(0) benign(0.013) TCGA-68-8250-01 19 52272948 52272948 C A FPR2 Missense_Mutation p.T346N 0.29 tolerated(0.28) benign(0.003) TCGA-68-8250-01 19 53219084 53219084 C A ZNF611 Splice_Site p.X21_splice 0.15 TCGA-68-8250-01 19 54080589 54080589 A G ZNF331 Missense_Mutation p.I259V 0.39 tolerated(0.14) benign(0.265) TCGA-68-8250-01 19 55246738 55246738 A C KIR3DL3 Missense_Mutation p.H323P 0.05 tolerated(0.11) benign(0.067) TCGA-68-8250-01 19 56467412 56467412 C A NLRP8 Missense_Mutation p.T663N 0.34 tolerated(0.06) benign(0.021) TCGA-68-8250-01 19 6467464 6467464 G T DENND1C 3'UTR 0.25 TCGA-68-8250-01 19 6919590 6919590 G A EMR1 Silent p.V484V 0.38 TCGA-68-8250-01 19 8148193 8148193 C T FBN3 Missense_Mutation p.G2384D 0.42 deleterious(0) benign(0.003) TCGA-68-8250-01 19 9063103 9063103 G A MUC16 Missense_Mutation p.P8115S 0.43 unknown(0) TCGA-68-8250-01 19 9076304 9076304 A C MUC16 Missense_Mutation p.H3714Q 0.06 unknown(0) TCGA-68-8250-01 1 103355076 103355076 G T COL11A1 Missense_Mutation p.Q1467K 0.25 unknown(0) TCGA-68-8250-01 1 110022175 110022176 CC A SYPL2 3'UTR 0.17 TCGA-68-8250-01 1 113655307 113655307 G A LRIG2 Missense_Mutation p.D669N 0.20 deleterious(0) probably_damaging(1) TCGA-68-8250-01 1 115142027 115142027 C T DENND2C Silent p.P717P 0.06 TCGA-68-8250-01 1 119469156 119469156 C A TBX15 Silent p.V60V 0.10 TCGA-68-8250-01 1 119469158 119469158 C A TBX15 Missense_Mutation p.V60L 0.10 deleterious(0.03) benign(0.026) TCGA-68-8250-01 1 1269661 1269661 C A TAS1R3 Silent p.A792A 0.11 TCGA-68-8250-01 1 145507700 145507700 G C RBM8A Missense_Mutation p.G12R 0.15 tolerated(0.35) benign(0.074) TCGA-68-8250-01 1 152185824 152185824 G T HRNR Silent p.R2761R 0.06 TCGA-68-8250-01 1 152659405 152659405 C T LCE2B Missense_Mutation p.P29L 0.12 deleterious_low_confidence(0.02) unknown(0) TCGA-68-8250-01 1 152770480 152770480 C T LCE1D Silent p.G70G 0.41 TCGA-68-8250-01 1 153043261 153043261 G A SPRR2B Missense_Mutation p.P19S 0.15 tolerated_low_confidence(0.11) unknown(0) TCGA-68-8250-01 1 153604398 153604398 T C S100A1 3'UTR 0.35 TCGA-68-8250-01 1 155823295 155823295 C A GON4L Nonsense_Mutation p.E93* 0.41 TCGA-68-8250-01 1 156351215 156351215 G A RHBG Missense_Mutation p.A251T 0.40 tolerated(0.06) benign(0.099) TCGA-68-8250-01 1 15833409 15833409 G A CASP9 Silent p.G205G 0.10 TCGA-68-8250-01 1 158988223 158988223 A G IFI16 Missense_Mutation p.K252E 0.23 deleterious(0) benign(0.398) TCGA-68-8250-01 1 160106794 160106794 G A ATP1A2 Missense_Mutation p.R938H 0.23 deleterious(0) probably_damaging(0.933) TCGA-68-8250-01 1 161018334 161018334 G C ARHGAP30 Missense_Mutation p.A826G 0.09 tolerated_low_confidence(0.1) benign(0.08) TCGA-68-8250-01 1 161043525 161043525 C T PVRL4 Silent p.T406T 0.07 TCGA-68-8250-01 1 166039743 166039743 A G FAM78B Missense_Mutation p.V174A 0.39 tolerated(0.18) probably_damaging(0.987) TCGA-68-8250-01 1 16935256 16935256 G C NBPF1 5'UTR 0.12 TCGA-68-8250-01 1 17668809 17668809 G A PADI4 Missense_Mutation p.V283M 0.42 deleterious(0.03) benign(0.155) TCGA-68-8250-01 1 177927412 177927412 T A SEC16B Missense_Mutation p.N407I 0.33 deleterious(0) probably_damaging(0.984) TCGA-68-8250-01 1 179086481 179086481 T G ABL2 Missense_Mutation p.K465T 0.38 deleterious(0) probably_damaging(0.996) TCGA-68-8250-01 1 179364274 179364274 A G AXDND1 Missense_Mutation p.K349R 0.13 tolerated(0.31) possibly_damaging(0.874) TCGA-68-8250-01 1 179965741 179965741 A T CEP350 Missense_Mutation p.H150L 0.20 benign(0.002) TCGA-68-8250-01 1 185951489 185951489 C G HMCN1 Missense_Mutation p.P920A 0.31 probably_damaging(0.998) TCGA-68-8250-01 1 185966615 185966615 G T HMCN1 Missense_Mutation p.R1278I 0.12 benign(0.015) TCGA-68-8250-01 1 185966616 185966616 A G HMCN1 Silent p.R1278R 0.12 TCGA-68-8250-01 1 192778190 192778190 G - RGS2 5'UTR 0.25 TCGA-68-8250-01 1 210273719 210273719 G A SYT14 Silent p.V404V 0.37 TCGA-68-8250-01 1 220825486 220825486 G T MARK1 Missense_Mutation p.R577L 0.20 deleterious(0.05) benign(0.061) TCGA-68-8250-01 1 223285037 223285037 C A TLR5 Missense_Mutation p.R446L 0.39 tolerated(0.05) benign(0.007) TCGA-68-8250-01 1 228473839 228473839 C T OBSCN Missense_Mutation p.A3451V 0.21 probably_damaging(0.999) TCGA-68-8250-01 1 237947541 237947541 G T RYR2 Missense_Mutation p.V4177F 0.31 probably_damaging(0.992) TCGA-68-8250-01 1 242161845 242161845 C G MAP1LC3C Silent p.L64L 0.12 TCGA-68-8250-01 1 243303260 243303260 C G CEP170 Silent p.R1403R 0.25 TCGA-68-8250-01 1 245026938 245026938 G A HNRNPU Silent p.R224R 0.36 TCGA-68-8250-01 1 247608095 247608095 C A NLRP3 Missense_Mutation p.Q995K 0.28 deleterious(0.03) possibly_damaging(0.496) TCGA-68-8250-01 1 247769203 247769203 G C OR2G3 Missense_Mutation p.A106P 0.26 tolerated(0.06) possibly_damaging(0.602) TCGA-68-8250-01 1 247902550 247902550 A G OR14K1 Missense_Mutation p.I212V 0.18 deleterious(0.02) benign(0.286) TCGA-68-8250-01 1 248845550 248845550 C A OR14I1 Missense_Mutation p.W19L 0.35 tolerated(0.23) benign(0.064) TCGA-68-8250-01 1 35370270 35370270 C A DLGAP3 Missense_Mutation p.G239C 0.14 deleterious(0.01) probably_damaging(0.925) TCGA-68-8250-01 1 46159078 46159078 G A TMEM69 Missense_Mutation p.R82K 0.11 tolerated(0.45) benign(0.007) TCGA-68-8250-01 1 48705119 48705119 C A SLC5A9 Missense_Mutation p.H554Q 0.35 deleterious(0.01) probably_damaging(0.976) TCGA-68-8250-01 1 52810442 52810442 G C ZFYVE9 Silent p.V1314V 0.23 TCGA-68-8250-01 1 53995484 53995484 G A GLIS1 Nonsense_Mutation p.Q313* 0.22 TCGA-68-8250-01 1 60139745 60139745 C G FGGY Silent p.S508S 0.12 TCGA-68-8250-01 1 6169885 6169885 T C CHD5 Missense_Mutation p.N1850D 0.19 deleterious(0.04) possibly_damaging(0.7) TCGA-68-8250-01 1 6185241 6185241 C A CHD5 Missense_Mutation p.R1438L 0.13 deleterious(0.01) probably_damaging(0.922) TCGA-68-8250-01 1 75086592 75086592 T A C1orf173 Nonsense_Mutation p.R276* 0.20 TCGA-68-8250-01 1 75217984 75217984 G A TYW3 Silent p.R145R 0.33 TCGA-68-8250-01 1 78001670 78001670 C A AK5 Silent p.R523R 0.25 TCGA-68-8250-01 1 86590718 86590718 C A COL24A1 Missense_Mutation p.R434I 0.30 tolerated(0.09) possibly_damaging(0.653) TCGA-68-8250-01 1 90470843 90470843 A G ZNF326 Intron 0.33 TCGA-68-8250-01 1 91781372 91781372 G T HFM1 Missense_Mutation p.T1047K 0.20 tolerated(0.15) benign(0.009) TCGA-68-8250-01 20 18435925 18435925 T A DZANK1 Missense_Mutation p.N115I 0.11 deleterious(0) benign(0.275) TCGA-68-8250-01 20 30486328 30486328 G T TTLL9 Missense_Mutation p.D56Y 0.24 deleterious(0) probably_damaging(0.99) TCGA-68-8250-01 20 33068930 33068930 T A ITCH Missense_Mutation p.L712Q 0.15 deleterious(0) probably_damaging(0.987) TCGA-68-8250-01 20 37357301 37357301 C A SLC32A1 3'UTR 0.36 TCGA-68-8250-01 20 44669965 44669965 T G SLC12A5 Intron 0.15 TCGA-68-8250-01 20 44675056 44675056 C G SLC12A5 Missense_Mutation p.R613G 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-68-8250-01 20 4705487 4705487 C A PRND Missense_Mutation p.A97D 0.28 deleterious_low_confidence(0) benign(0.015) TCGA-68-8250-01 20 52786192 52786192 G C CYP24A1 Silent p.L193L 0.22 TCGA-68-8250-01 20 55803447 55803447 C A BMP7 Missense_Mutation p.R150L 0.08 deleterious(0.02) possibly_damaging(0.737) TCGA-68-8250-01 20 61386235 61386235 C T NTSR1 Silent p.L305L 0.14 TCGA-68-8250-01 21 15537618 15537618 C A LIPI Missense_Mutation p.R297L 0.15 tolerated(0.19) benign(0.002) TCGA-68-8250-01 21 31655003 31655003 G C KRTAP24-1 Missense_Mutation p.T83S 0.20 tolerated(0.32) possibly_damaging(0.874) TCGA-68-8250-01 21 34165997 34165997 G A C21orf62 3'UTR 0.17 TCGA-68-8250-01 21 34165998 34165998 G T C21orf62 3'UTR 0.17 TCGA-68-8250-01 22 22891009 22891009 C A PRAME Missense_Mutation p.G337V 0.41 deleterious(0) benign(0.004) TCGA-68-8250-01 22 23047075 23047075 G T IGLV3-22 Missense_Mutation p.R38M 0.47 deleterious(0.05) possibly_damaging(0.886) TCGA-68-8250-01 22 32072876 32072876 G T PRR14L 3'Flank 0.50 TCGA-68-8250-01 2 114257568 114257568 C T FOXD4L1 Silent p.V245V 0.15 TCGA-68-8250-01 2 130832342 130832342 G T POTEF Silent p.T901T 0.53 TCGA-68-8250-01 2 135621138 135621138 C A ACMSD Silent p.V141V 0.19 TCGA-68-8250-01 2 137814213 137814213 C G THSD7B Silent p.R121R 0.14 TCGA-68-8250-01 2 15519846 15519846 T A NBAS Missense_Mutation p.H1157L 0.13 tolerated(0.74) benign(0.012) TCGA-68-8250-01 2 161056600 161056600 C A ITGB6 5'UTR 0.12 TCGA-68-8250-01 2 166605333 166605333 T C GALNT3 Silent p.P620P 0.34 TCGA-68-8250-01 2 166773862 166773862 T A TTC21B Missense_Mutation p.T602S 0.19 tolerated(1) benign(0.001) TCGA-68-8250-01 2 168096409 168096409 G T XIRP2 Missense_Mutation p.Q301H 0.09 benign(0.042) TCGA-68-8250-01 2 178879180 178879180 C A PDE11A Missense_Mutation p.R307L 0.35 deleterious(0) probably_damaging(0.982) TCGA-68-8250-01 2 179438867 179438867 G A TTN Missense_Mutation p.R23998C 0.15 TCGA-68-8250-01 2 185800666 185800666 C A ZNF804A Silent p.T181T 0.35 TCGA-68-8250-01 2 189406036 189406036 C A GULP1 Missense_Mutation p.S130R 0.26 deleterious(0) probably_damaging(0.993) TCGA-68-8250-01 2 210560227 210560227 A G MAP2 Silent p.K1111K 0.37 TCGA-68-8250-01 2 211473283 211473283 G T CPS1 Missense_Mutation p.E803D 0.28 deleterious(0) benign(0.423) TCGA-68-8250-01 2 223096931 223096931 G T PAX3 Missense_Mutation p.R220S 0.28 deleterious(0) probably_damaging(0.999) TCGA-68-8250-01 2 228884070 228884070 T A SPHKAP Missense_Mutation p.L500F 0.43 deleterious(0) probably_damaging(0.997) TCGA-68-8250-01 2 241712576 241712576 G T KIF1A Missense_Mutation p.L379M 0.23 deleterious(0) probably_damaging(1) TCGA-68-8250-01 2 25606729 25606729 T A DTNB Nonsense_Mutation p.K619* 0.28 TCGA-68-8250-01 2 27322335 27322335 G A KHK Missense_Mutation p.G234D 0.30 tolerated(0.3) benign(0.061) TCGA-68-8250-01 2 28152704 28152704 C G BRE Missense_Mutation p.T45R 0.05 tolerated(0.06) possibly_damaging(0.862) TCGA-68-8250-01 2 29375666 29375666 A T CLIP4 Silent p.V379V 0.22 TCGA-68-8250-01 2 39934233 39934233 G T TMEM178A Missense_Mutation p.V187F 0.04 deleterious(0) probably_damaging(0.967) TCGA-68-8250-01 2 48915211 48915211 G A LHCGR Silent p.I575I 0.04 TCGA-68-8250-01 2 53992601 53992601 C A ASB3 Missense_Mutation p.D72Y 0.19 deleterious(0) probably_damaging(1) TCGA-68-8250-01 2 60688594 60688594 C A BCL11A Nonsense_Mutation p.E485* 0.18 TCGA-68-8250-01 2 61343129 61343129 C G KIAA1841 Missense_Mutation p.P587R 0.19 tolerated(0.1) possibly_damaging(0.796) TCGA-68-8250-01 2 73784389 73784389 C G ALMS1 Nonsense_Mutation p.S3373* 0.19 TCGA-68-8250-01 2 77746604 77746604 G T LRRTM4 Missense_Mutation p.P131T 0.16 tolerated(0.18) possibly_damaging(0.577) TCGA-68-8250-01 2 80816431 80816431 C A CTNNA2 Silent p.A670A 0.08 TCGA-68-8250-01 2 90060817 90060817 A T IGKV6D-21 Missense_Mutation p.Y55F 0.31 tolerated(0.07) benign(0.445) TCGA-68-8250-01 3 101484043 101484043 G T CEP97 Missense_Mutation p.G749V 0.28 deleterious(0.01) benign(0.393) TCGA-68-8250-01 3 119134108 119134108 C A ARHGAP31 Missense_Mutation p.P1111H 0.26 deleterious(0.01) benign(0.332) TCGA-68-8250-01 3 126224813 126224813 G A UROC1 Missense_Mutation p.P215L 0.16 deleterious(0) probably_damaging(0.999) TCGA-68-8250-01 3 126724052 126724052 C T PLXNA1 Silent p.S621S 0.15 TCGA-68-8250-01 3 129152723 129152723 T C MBD4 Missense_Mutation p.I461V 0.27 tolerated(0.05) probably_damaging(0.996) TCGA-68-8250-01 3 130282306 130282306 C A COL6A6 Silent p.A153A 0.22 TCGA-68-8250-01 3 132244598 132244598 G T DNAJC13 Missense_Mutation p.A2069S 0.15 tolerated(0.22) benign(0.023) TCGA-68-8250-01 3 13361381 13361381 C A NUP210 Silent p.A1755A 0.45 TCGA-68-8250-01 3 134280356 134280356 A T CEP63 Missense_Mutation p.R697S 0.21 deleterious(0) benign(0.025) TCGA-68-8250-01 3 142511706 142511706 A G TRPC1 Missense_Mutation p.H493R 0.25 deleterious(0.03) probably_damaging(0.996) TCGA-68-8250-01 3 143691796 143691797 - C C3orf58 Frame_Shift_Ins p.L209Pfs*16 0.28 TCGA-68-8250-01 3 157816096 157816096 T C SHOX2 Missense_Mutation p.N263S 0.17 tolerated(0.1) possibly_damaging(0.652) TCGA-68-8250-01 3 180359921 180359921 C G CCDC39 Missense_Mutation p.K578N 0.13 deleterious(0.02) probably_damaging(0.974) TCGA-68-8250-01 3 183663671 183663671 G A ABCC5 Silent p.F1157F 0.07 TCGA-68-8250-01 3 194080684 194080684 C A LRRC15 Missense_Mutation p.M369I 0.25 tolerated(0.16) benign(0.003) TCGA-68-8250-01 3 194365467 194365467 C T LSG1 Silent p.L544L 0.20 TCGA-68-8250-01 3 44488029 44488029 C A ZNF445 3'UTR 0.44 TCGA-68-8250-01 4 13370199 13370199 T A RAB28 Missense_Mutation p.M217L 0.41 tolerated(0.53) benign(0) TCGA-68-8250-01 4 144336896 144336896 C A GAB1 Missense_Mutation p.D113E 0.35 tolerated(0.39) benign(0.263) TCGA-68-8250-01 4 147788727 147788727 T A TTC29 Nonsense_Mutation p.K270* 0.50 TCGA-68-8250-01 4 158257821 158257821 C T GRIA2 Missense_Mutation p.T589I 0.43 tolerated(0.09) possibly_damaging(0.579) TCGA-68-8250-01 4 159048739 159048739 C T FAM198B Silent p.L468L 0.10 TCGA-68-8250-01 4 1801005 1801005 A G FGFR3 Missense_Mutation p.Q45R 0.14 tolerated(0.07) benign(0.173) TCGA-68-8250-01 4 187455432 187455432 G A MTNR1A Missense_Mutation p.T155M 0.46 deleterious(0) possibly_damaging(0.815) TCGA-68-8250-01 4 187540018 187540018 T A FAT1 Silent p.G2574G 0.38 TCGA-68-8250-01 4 46737219 46737219 C G COX7B2 5'UTR 0.12 TCGA-68-8250-01 4 47427701 47427701 A G GABRB1 Missense_Mutation p.H364R 0.11 tolerated(0.27) benign(0.021) TCGA-68-8250-01 4 48114344 48114344 C - TXK Frame_Shift_Del p.W120* 0.11 TCGA-68-8250-01 4 54265986 54265986 G T FIP1L1 Missense_Mutation p.K265N 0.55 tolerated(0.06) probably_damaging(0.978) TCGA-68-8250-01 4 654384 654384 G C PDE6B Missense_Mutation p.K532N 0.53 deleterious(0) possibly_damaging(0.645) TCGA-68-8250-01 4 71859628 71859628 A G DCK Missense_Mutation p.I26V 0.11 tolerated(0.33) benign(0.005) TCGA-68-8250-01 4 80975478 80975478 T G ANTXR2 Missense_Mutation p.Q195P 0.28 deleterious(0) probably_damaging(0.996) TCGA-68-8250-01 4 8588953 8588953 C A GPR78 Missense_Mutation p.P319T 0.17 tolerated_low_confidence(0.19) benign(0.254) TCGA-68-8250-01 4 99363338 99363338 G C RAP1GDS1 3'UTR 0.39 TCGA-68-8250-01 5 10411650 10411650 G A MARCH6 Splice_Site p.X632_splice 0.25 TCGA-68-8250-01 5 121758574 121758574 A T SNCAIP Missense_Mutation p.S48C 0.47 deleterious(0) possibly_damaging(0.576) TCGA-68-8250-01 5 137488215 137488215 C T BRD8 Missense_Mutation p.A938T 0.44 tolerated_low_confidence(0.38) benign(0.003) TCGA-68-8250-01 5 140250297 140250297 C T PCDHA11 Missense_Mutation p.R537C 0.44 deleterious_low_confidence(0.01) benign(0.209) TCGA-68-8250-01 5 140711492 140711492 T A PCDHGA1 Missense_Mutation p.L414H 0.38 tolerated_low_confidence(0.08) benign(0.008) TCGA-68-8250-01 5 145562167 145562167 A G LARS 5'UTR 0.24 TCGA-68-8250-01 5 150838458 150838458 G T SLC36A1 Silent p.P35P 0.38 TCGA-68-8250-01 5 161116641 161116641 G T GABRA6 Splice_Site p.X177_splice 0.39 TCGA-68-8250-01 5 171766582 171766582 C T SH3PXD2B Silent p.E509E 0.50 TCGA-68-8250-01 5 176318093 176318093 G A HK3 Missense_Mutation p.P120L 0.45 tolerated(0.44) benign(0.05) TCGA-68-8250-01 5 176519379 176519379 T G FGFR4 Missense_Mutation p.V262G 0.15 deleterious(0.03) possibly_damaging(0.906) TCGA-68-8250-01 5 178505842 178505842 G C ZNF354C Missense_Mutation p.E137Q 0.08 tolerated(1) possibly_damaging(0.69) TCGA-68-8250-01 5 40950019 40950019 C A C7 Silent p.V332V 0.17 TCGA-68-8250-01 5 77473179 77473179 A T AP3B1 Missense_Mutation p.L342I 0.39 tolerated(0.07) possibly_damaging(0.531) TCGA-68-8250-01 5 90002195 90002195 A T GPR98 Missense_Mutation p.N2905I 0.62 probably_damaging(0.995) TCGA-68-8250-01 6 10930644 10930644 A G SYCP2L Silent p.Q510Q 0.26 TCGA-68-8250-01 6 110752438 110752438 C T SLC22A16 Missense_Mutation p.R486H 0.18 deleterious(0.03) probably_damaging(0.928) TCGA-68-8250-01 6 127797412 127797412 G C SOGA3 Missense_Mutation p.L587V 0.04 tolerated(0.09) probably_damaging(0.999) TCGA-68-8250-01 6 134210627 134210627 T A TCF21 Missense_Mutation p.F31Y 0.34 tolerated_low_confidence(1) benign(0.062) TCGA-68-8250-01 6 159239187 159239187 C G EZR 5'UTR 0.19 TCGA-68-8250-01 6 169637751 169637751 C A THBS2 Silent p.R423R 0.08 TCGA-68-8250-01 6 169637752 169637752 C A THBS2 Missense_Mutation p.R423L 0.08 deleterious(0) probably_damaging(0.946) TCGA-68-8250-01 6 28889698 28889698 G - TRIM27 Frame_Shift_Del p.Q163Rfs*10 0.10 TCGA-68-8250-01 6 35803068 35803068 G A SRPK1 3'UTR 0.14 TCGA-68-8250-01 6 36193074 36193074 G T BRPF3 Missense_Mutation p.R1071L 0.09 tolerated(0.29) benign(0.005) TCGA-68-8250-01 6 38820517 38820517 T C DNAH8 Silent p.H1621H 0.20 TCGA-68-8250-01 6 4069027 4069027 A G FAM217A Missense_Mutation p.I477T 0.41 tolerated(0.09) benign(0.035) TCGA-68-8250-01 6 41248824 41248824 G C TREM1 Silent p.T158T 0.32 TCGA-68-8250-01 6 42646300 42646300 G T UBR2 Missense_Mutation p.G1501V 0.35 deleterious(0.01) benign(0.024) TCGA-68-8250-01 6 56499322 56499322 C G DST Missense_Mutation p.M607I 0.17 benign(0.26) TCGA-68-8250-01 6 64395697 64395697 G T PHF3 Missense_Mutation p.D692Y 0.37 deleterious(0) probably_damaging(1) TCGA-68-8250-01 6 72596745 72596745 C - RIMS1 Frame_Shift_Del p.R8Afs*18 0.19 TCGA-68-8250-01 6 73100417 73100417 A G RIMS1 Missense_Mutation p.N1495S 0.08 deleterious(0) probably_damaging(0.989) TCGA-68-8250-01 6 7556050 7556050 G T DSP Missense_Mutation p.Q90H 0.19 probably_damaging(0.991) TCGA-68-8250-01 6 84417575 84417575 T G SNAP91 Missense_Mutation p.R24S 0.18 deleterious(0) unknown(0) TCGA-68-8250-01 6 90573413 90573413 G T CASP8AP2 RNA 0.08 TCGA-68-8250-01 7 100028409 100028409 C T MEPCE Silent p.L256L 0.24 TCGA-68-8250-01 7 100349340 100349340 G T ZAN Missense_Mutation p.V538L 0.20 benign(0.021) TCGA-68-8250-01 7 103191704 103191704 G T RELN Missense_Mutation p.P2038T 0.39 deleterious(0.02) probably_damaging(0.998) TCGA-68-8250-01 7 105658359 105658359 C T CDHR3 Silent p.S498S 0.19 TCGA-68-8250-01 7 108524241 108524241 T C C7orf66 Silent p.P57P 0.23 TCGA-68-8250-01 7 123329110 123329110 G C WASL Missense_Mutation p.A481G 0.26 deleterious(0.01) probably_damaging(0.995) TCGA-68-8250-01 7 126173333 126173333 G A GRM8 Silent p.S701S 0.22 TCGA-68-8250-01 7 126882767 126882767 G C GRM8 Missense_Mutation p.N164K 0.25 deleterious(0) probably_damaging(0.926) TCGA-68-8250-01 7 130039878 130039878 A C CEP41 Splice_Site p.X325_splice 0.32 TCGA-68-8250-01 7 131195671 131195671 G A PODXL Missense_Mutation p.H208Y 0.10 tolerated(0.06) possibly_damaging(0.538) TCGA-68-8250-01 7 131195737 131195737 G T PODXL Missense_Mutation p.P186T 0.08 tolerated(0.19) possibly_damaging(0.665) TCGA-68-8250-01 7 131195984 131195984 G C PODXL Silent p.V103V 0.09 TCGA-68-8250-01 7 131196035 131196035 G A PODXL Silent p.S86S 0.10 TCGA-68-8250-01 7 131196036 131196036 G A PODXL Missense_Mutation p.S86F 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.675) TCGA-68-8250-01 7 133833073 133833073 G T LRGUK Splice_Site p.X224_splice 0.21 TCGA-68-8250-01 7 137092669 137092669 C A DGKI Missense_Mutation p.A966S 0.41 deleterious(0.03) possibly_damaging(0.605) TCGA-68-8250-01 7 138546102 138546102 T A KIAA1549 Missense_Mutation p.Q1677L 0.31 deleterious(0) probably_damaging(0.984) TCGA-68-8250-01 7 141536132 141536132 G T PRSS37 3'UTR 0.23 TCGA-68-8250-01 7 142139378 142139378 G T TRBV7-6 Silent p.R83R 0.36 TCGA-68-8250-01 7 142250955 142250955 A T TRBV6-4 Missense_Mutation p.I31N 0.12 deleterious(0) probably_damaging(0.981) TCGA-68-8250-01 7 142749609 142749609 T G OR6V1 Missense_Mutation p.Y58D 0.24 deleterious(0) probably_damaging(1) TCGA-68-8250-01 7 150490370 150490370 A T TMEM176B Missense_Mutation p.F136I 0.24 tolerated(1) benign(0.003) TCGA-68-8250-01 7 151699959 151699959 G A GALNTL5 Silent p.R273R 0.21 TCGA-68-8250-01 7 16736571 16736571 G A BZW2 Missense_Mutation p.R285K 0.21 tolerated(1) benign(0.001) TCGA-68-8250-01 7 20762798 20762798 G A ABCB5 Missense_Mutation p.G861R 0.37 deleterious(0.01) probably_damaging(1) TCGA-68-8250-01 7 21747450 21747450 G C DNAH11 Missense_Mutation p.G2234A 0.38 possibly_damaging(0.701) TCGA-68-8250-01 7 40174139 40174139 T C MPLKIP Missense_Mutation p.T10A 0.37 deleterious(0.01) unknown(0) TCGA-68-8250-01 7 66489978 66489978 G A TYW1 Missense_Mutation p.G318D 0.04 deleterious(0) probably_damaging(0.998) TCGA-68-8250-01 7 66770972 66770972 A C STAG3L4 Splice_Site 0.11 TCGA-68-8250-01 7 72848629 72848629 C A FZD9 Missense_Mutation p.P98T 0.25 deleterious(0) possibly_damaging(0.864) TCGA-68-8250-01 7 7612904 7612904 A G MIOS Silent p.Q266Q 0.28 TCGA-68-8250-01 7 77397989 77397989 A G RSBN1L Silent p.P498P 0.32 TCGA-68-8250-01 7 80276073 80276073 A G CD36 Missense_Mutation p.N6S 0.21 tolerated(0.3) benign(0.023) TCGA-68-8250-01 7 81579642 81579642 T C CACNA2D1 3'UTR 0.23 TCGA-68-8250-01 8 100673673 100673673 A G VPS13B Silent p.P2025P 0.25 TCGA-68-8250-01 8 104312366 104312366 A G FZD6 Missense_Mutation p.I11V 0.55 tolerated_low_confidence(1) benign(0) TCGA-68-8250-01 8 109001310 109001310 C A RSPO2 Missense_Mutation p.R86L 0.27 deleterious(0) probably_damaging(0.993) TCGA-68-8250-01 8 110472063 110472063 C A PKHD1L1 Missense_Mutation p.T2415K 0.52 deleterious(0) possibly_damaging(0.493) TCGA-68-8250-01 8 113301599 113301599 C A CSMD3 Missense_Mutation p.C3048F 0.20 deleterious(0.01) probably_damaging(0.954) TCGA-68-8250-01 8 113358341 113358341 G C CSMD3 Missense_Mutation p.L2143V 0.24 tolerated(0.1) possibly_damaging(0.53) TCGA-68-8250-01 8 113678570 113678570 A G CSMD3 Missense_Mutation p.S918P 0.27 deleterious(0) probably_damaging(1) TCGA-68-8250-01 8 126095487 126095487 C A KIAA0196 Missense_Mutation p.W67L 0.16 tolerated(0.46) benign(0.003) TCGA-68-8250-01 8 133911103 133911103 G C TG Missense_Mutation p.R1093T 0.21 tolerated(0.12) benign(0.009) TCGA-68-8250-01 8 139190817 139190817 T A FAM135B Missense_Mutation p.Q330H 0.47 tolerated(0.37) benign(0.008) TCGA-68-8250-01 8 17942295 17942295 C G ASAH1 Missense_Mutation p.G6R 0.23 tolerated_low_confidence(0.31) benign(0.086) TCGA-68-8250-01 8 37687399 37687399 C T GPR124 Silent p.D195D 0.20 TCGA-68-8250-01 8 38095093 38095093 A G DDHD2 Missense_Mutation p.K150R 0.19 tolerated(0.37) possibly_damaging(0.682) TCGA-68-8250-01 8 48511613 48511613 G T SPIDR Missense_Mutation p.D467Y 0.32 deleterious(0) probably_damaging(0.943) TCGA-68-8250-01 8 55533950 55533950 G A RP1 Missense_Mutation p.V142I 0.21 tolerated(0.49) benign(0.003) TCGA-68-8250-01 8 67086758 67086758 G A TRIM55 Missense_Mutation p.G526D 0.20 tolerated_low_confidence(0.07) benign(0.036) TCGA-68-8250-01 8 70533276 70533276 C T SULF1 Nonsense_Mutation p.Q462* 0.19 TCGA-68-8250-01 8 77616336 77616336 G T ZFHX4 Missense_Mutation p.D5Y 0.12 probably_damaging(0.934) TCGA-68-8250-01 8 77775563 77775563 G T ZFHX4 Nonsense_Mutation p.E3205* 0.25 TCGA-68-8250-01 8 89081646 89081646 T A MMP16 Intron 0.39 TCGA-68-8250-01 8 90798866 90798866 G T RIPK2 Nonsense_Mutation p.E359* 0.18 TCGA-68-8250-01 9 107651432 107651432 C A ABCA1 Silent p.L37L 0.38 TCGA-68-8250-01 9 109690923 109690923 A T ZNF462 Missense_Mutation p.Y1577F 0.44 possibly_damaging(0.593) TCGA-68-8250-01 9 117062361 117062361 C T COL27A1 Silent p.G1532G 0.05 TCGA-68-8250-01 9 13222401 13222401 C - MPDZ Frame_Shift_Del p.G193Dfs*26 0.19 TCGA-68-8250-01 9 139404241 139404243 GCA CC NOTCH1 Frame_Shift_Del p.C971Gfs*208 0.30 TCGA-68-8250-01 9 17236572 17236572 G T CNTLN Missense_Mutation p.D279Y 0.18 deleterious(0) probably_damaging(0.973) TCGA-68-8250-01 9 27950363 27950363 T C LINGO2 Missense_Mutation p.N103D 0.07 tolerated(0.32) benign(0.012) TCGA-68-8250-01 9 32631386 32631386 T C TAF1L Missense_Mutation p.T1398A 0.07 tolerated(0.2) benign(0.003) TCGA-68-8250-01 9 35957216 35957216 G C OR2S2 Missense_Mutation p.P294A 0.27 deleterious(0) possibly_damaging(0.896) TCGA-68-8250-01 9 77435337 77435337 C T TRPM6 Silent p.L339L 0.44 TCGA-68-8250-01 9 77761646 77761646 G T OSTF1 Missense_Mutation p.D212Y 0.45 deleterious(0) probably_damaging(0.998) TCGA-68-8250-01 9 80856666 80856666 G C CEP78 Missense_Mutation p.G185A 0.43 tolerated(0.2) benign(0.265) TCGA-68-8250-01 X 103268100 103268100 G T H2BFWT Missense_Mutation p.Q45K 0.41 tolerated(0.73) benign(0.031) TCGA-68-8250-01 X 115303502 115303502 G A AGTR2 5'UTR 0.44 TCGA-68-8250-01 X 144909228 144909228 A G TMEM257 Silent p.S11S 0.45 TCGA-68-8250-01 X 14910948 14910948 A C MOSPD2 Silent p.T61T 0.65 TCGA-68-8250-01 X 153134999 153134999 C G L1CAM Missense_Mutation p.A415P 0.63 deleterious(0.01) probably_damaging(0.962) TCGA-68-8250-01 X 155149514 155149514 G T VAMP7 Intron 0.19 TCGA-68-8250-01 X 1761919 1761919 G T ASMT 3'UTR 0.21 TCGA-68-8250-01 X 26157707 26157707 T C MAGEB18 Missense_Mutation p.I202T 0.37 tolerated(1) benign(0.008) TCGA-68-8250-01 X 30268969 30268969 T G MAGEB1 Missense_Mutation p.L120R 0.52 deleterious(0) probably_damaging(0.997) TCGA-68-8250-01 X 31152252 31152252 C A DMD Nonsense_Mutation p.E3661* 0.62 TCGA-68-8250-01 X 32380966 32380966 G A DMD Missense_Mutation p.P1755L 0.31 possibly_damaging(0.851) TCGA-68-8250-01 X 40572234 40572234 C T MED14 Missense_Mutation p.G238E 0.59 deleterious(0) possibly_damaging(0.652) TCGA-68-8250-01 X 49142828 49142828 G T PPP1R3F Missense_Mutation p.R559L 0.52 deleterious_low_confidence(0.01) possibly_damaging(0.575) TCGA-68-8250-01 X 55286989 55286989 C A PAGE3 Missense_Mutation p.E99D 0.58 tolerated(0.32) possibly_damaging(0.874) TCGA-68-8250-01 X 78011177 78011177 T A LPAR4 Missense_Mutation p.L271M 0.56 tolerated(0.09) possibly_damaging(0.714) TCGA-68-8250-01 X 96638997 96638997 G C DIAPH2 Missense_Mutation p.K1033N 0.58 deleterious(0.01) probably_damaging(0.959) TCGA-68-8251-01 10 102987169 102987169 G A LBX1 Missense_Mutation p.P235L 0.33 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-68-8251-01 10 1034348 1034348 T C GTPBP4 5'UTR 0.17 TCGA-68-8251-01 10 120803608 120803608 C T EIF3A Missense_Mutation p.G902E 0.06 tolerated(0.36) probably_damaging(0.912) TCGA-68-8251-01 10 125526569 125526569 C A CPXM2 Nonsense_Mutation p.E467* 0.33 TCGA-68-8251-01 10 22016839 22016839 G C MLLT10 Missense_Mutation p.R682P 0.28 deleterious(0) probably_damaging(0.958) TCGA-68-8251-01 10 26463010 26463010 T C MYO3A Missense_Mutation p.W1273R 0.26 tolerated_low_confidence(0.57) benign(0.001) TCGA-68-8251-01 10 4889404 4889404 G A AKR1E2 Missense_Mutation p.R301Q 0.42 deleterious(0) probably_damaging(0.999) TCGA-68-8251-01 10 64905987 64905987 C T NRBF2 Nonsense_Mutation p.R17* 0.31 TCGA-68-8251-01 10 87379773 87379773 G A GRID1 Silent p.Y737Y 0.40 TCGA-68-8251-01 10 88917836 88917836 C T FAM35A Silent p.G519G 0.13 TCGA-68-8251-01 10 94836771 94836771 C A CYP26A1 Missense_Mutation p.H402N 0.34 deleterious(0) probably_damaging(0.995) TCGA-68-8251-01 11 102709857 102709857 G A MMP3 Silent p.L351L 0.29 TCGA-68-8251-01 11 10517253 10517253 G A AMPD3 Missense_Mutation p.R477H 0.12 deleterious(0) probably_damaging(0.984) TCGA-68-8251-01 11 122929368 122929368 C T HSPA8 Silent p.E498E 0.06 TCGA-68-8251-01 11 35515735 35515735 G A PAMR1 Silent p.C53C 0.14 TCGA-68-8251-01 11 46703669 46703669 G A ARHGAP1 Silent p.H127H 0.24 TCGA-68-8251-01 11 47826131 47826131 C T NUP160 Silent p.L882L 0.22 TCGA-68-8251-01 11 48166309 48166309 C T PTPRJ Silent p.L886L 0.27 TCGA-68-8251-01 11 55761748 55761748 C A OR5F1 Missense_Mutation p.M118I 0.29 deleterious(0) benign(0.443) TCGA-68-8251-01 11 64645631 64645631 G A EHD1 Silent p.H102H 0.05 TCGA-68-8251-01 11 65113255 65113255 G A DPF2 Silent p.Q252Q 0.08 TCGA-68-8251-01 11 65638122 65638122 G A EFEMP2 Silent p.D125D 0.15 TCGA-68-8251-01 11 66638526 66638526 G A PC Silent p.Y210Y 0.09 TCGA-68-8251-01 11 67168551 67168551 G T PPP1CA Missense_Mutation p.L70I 0.12 tolerated_low_confidence(1) benign(0.075) TCGA-68-8251-01 11 74546991 74546991 C T RNF169 Missense_Mutation p.S448L 0.35 deleterious(0) possibly_damaging(0.873) TCGA-68-8251-01 11 75438511 75438511 G A MOGAT2 Missense_Mutation p.R101Q 0.29 tolerated(0.34) benign(0.011) TCGA-68-8251-01 11 75480155 75480155 G A DGAT2 Nonsense_Mutation p.W40* 0.20 TCGA-68-8251-01 11 85374843 85374843 G C CREBZF 3'UTR 0.29 TCGA-68-8251-01 11 85375018 85375018 G A CREBZF Missense_Mutation p.A301V 0.25 tolerated(0.1) possibly_damaging(0.758) TCGA-68-8251-01 11 85375032 85375032 G A CREBZF Silent p.F296F 0.29 TCGA-68-8251-01 11 92534518 92534518 A G FAT3 Missense_Mutation p.H2780R 0.30 benign(0.004) TCGA-68-8251-01 11 9430181 9430181 C T IPO7 Silent p.L105L 0.08 TCGA-68-8251-01 12 111776231 111776231 C A CUX2 Missense_Mutation p.P1113H 0.20 deleterious(0) possibly_damaging(0.85) TCGA-68-8251-01 12 118673462 118673462 C G TAOK3 Missense_Mutation p.G151A 0.23 tolerated(0.08) benign(0.379) TCGA-68-8251-01 12 123019278 123019278 C T KNTC1 Missense_Mutation p.S66L 0.27 deleterious(0) possibly_damaging(0.508) TCGA-68-8251-01 12 130926570 130926570 C T RIMBP2 Missense_Mutation p.E426K 0.20 tolerated(0.07) possibly_damaging(0.664) TCGA-68-8251-01 12 1995488 1995488 C G CACNA2D4 Silent p.V298V 0.23 TCGA-68-8251-01 12 22061122 22061122 G C ABCC9 Silent p.L448L 0.21 TCGA-68-8251-01 12 27462050 27462050 C T STK38L Missense_Mutation p.R105W 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-68-8251-01 12 32735244 32735244 A C FGD4 Missense_Mutation p.D148A 0.03 deleterious_low_confidence(0.03) benign(0.044) TCGA-68-8251-01 12 33030809 33030809 C G PKP2 Missense_Mutation p.E335D 0.22 tolerated(0.23) benign(0.023) TCGA-68-8251-01 12 33031345 33031345 C G PKP2 Missense_Mutation p.E157Q 0.24 deleterious(0.02) possibly_damaging(0.881) TCGA-68-8251-01 12 53086302 53086302 G A KRT77 Missense_Mutation p.R444W 0.20 deleterious(0) probably_damaging(0.985) TCGA-68-8251-01 12 56355456 56355456 C T PMEL Missense_Mutation p.R46K 0.13 tolerated(0.77) benign(0.005) TCGA-68-8251-01 12 56865554 56865554 C G GLS2 Intron 0.20 TCGA-68-8251-01 12 78573434 78573434 A T NAV3 Missense_Mutation p.Q1808L 0.19 deleterious(0) possibly_damaging(0.882) TCGA-68-8251-01 12 81839425 81839425 T A PPFIA2 Missense_Mutation p.Q160H 0.19 deleterious(0) probably_damaging(1) TCGA-68-8251-01 12 90020270 90020270 C T ATP2B1 Missense_Mutation p.G364R 0.17 deleterious(0) probably_damaging(1) TCGA-68-8251-01 12 96374604 96374604 C A HAL Missense_Mutation p.G442V 0.29 deleterious(0) probably_damaging(1) TCGA-68-8251-01 13 42761258 42761258 G A DGKH Missense_Mutation p.V538I 0.26 tolerated(0.12) benign(0.001) TCGA-68-8251-01 13 48528552 48528552 C T SUCLA2 Missense_Mutation p.D315N 0.37 deleterious(0.03) benign(0.061) TCGA-68-8251-01 14 100847779 100847779 T A WDR25 Missense_Mutation p.V173E 0.32 deleterious(0) possibly_damaging(0.878) TCGA-68-8251-01 14 103357664 103357664 G A TRAF3 Silent p.G243G 0.27 TCGA-68-8251-01 14 103357689 103357689 G A TRAF3 Missense_Mutation p.E252K 0.26 deleterious(0.01) probably_damaging(0.921) TCGA-68-8251-01 14 23858809 23858809 G A MYH6 Silent p.T1284T 0.36 TCGA-68-8251-01 14 65008982 65008982 G A HSPA2 Missense_Mutation p.R472H 0.38 deleterious_low_confidence(0) possibly_damaging(0.849) TCGA-68-8251-01 14 65252556 65252556 C G SPTB Missense_Mutation p.L1225F 0.04 deleterious(0.04) benign(0.194) TCGA-68-8251-01 14 92347754 92347754 C T FBLN5 Missense_Mutation p.E291K 0.36 deleterious(0) probably_damaging(0.999) TCGA-68-8251-01 14 93151479 93151479 C A RIN3 Missense_Mutation p.S872Y 0.28 deleterious(0.01) benign(0.414) TCGA-68-8251-01 15 34647775 34647775 T A NUTM1 Missense_Mutation p.S494R 0.22 tolerated(0.06) benign(0.062) TCGA-68-8251-01 15 42052551 42052551 G C MGA Missense_Mutation p.D2408H 0.24 deleterious(0.01) possibly_damaging(0.841) TCGA-68-8251-01 15 42054412 42054412 G A MGA Silent p.K2532K 0.21 TCGA-68-8251-01 15 42054514 42054514 G T MGA Missense_Mutation p.R2566S 0.14 deleterious(0) probably_damaging(0.997) TCGA-68-8251-01 15 42058617 42058617 G C MGA Missense_Mutation p.K2779N 0.18 deleterious(0.01) possibly_damaging(0.479) TCGA-68-8251-01 15 44029024 44029024 C G RNU6-354P 5'Flank 0.18 TCGA-68-8251-01 15 63541860 63541860 G A RAB8B Missense_Mutation p.E68K 0.15 deleterious(0) probably_damaging(0.991) TCGA-68-8251-01 15 75047478 75047478 G A CYP1A2 3'UTR 0.14 TCGA-68-8251-01 15 75105195 75105195 G A LMAN1L 5'UTR 0.04 TCGA-68-8251-01 15 75197033 75197033 C T FAM219B Missense_Mutation p.R134K 0.04 tolerated(0.09) probably_damaging(0.994) TCGA-68-8251-01 15 77474292 77474292 C A PEAK1 5'UTR 0.14 TCGA-68-8251-01 15 78463777 78463777 A G IDH3A 3'UTR 0.18 TCGA-68-8251-01 15 78526721 78526721 C G ACSBG1 Missense_Mutation p.L41F 0.26 tolerated_low_confidence(0.49) benign(0.001) TCGA-68-8251-01 15 89021161 89021161 C T MRPS11 Missense_Mutation p.T179I 0.10 deleterious(0) probably_damaging(0.993) TCGA-68-8251-01 15 93515585 93515585 C G CHD2 Missense_Mutation p.Q815E 0.22 deleterious(0) probably_damaging(0.997) TCGA-68-8251-01 16 2087917 2087917 A G SLC9A3R2 Missense_Mutation p.M316V 0.27 deleterious(0) benign(0.004) TCGA-68-8251-01 16 2138580 2138580 C G TSC2 Missense_Mutation p.S1798C 0.46 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-68-8251-01 16 2140015 2140015 C G PKD1 Missense_Mutation p.E4209Q 0.31 benign(0.197) TCGA-68-8251-01 16 25186357 25186357 T C LCMT1 Splice_Site p.X328_splice 0.32 TCGA-68-8251-01 16 2732567 2732567 C A KCTD5 Nonsense_Mutation p.C6* 0.47 TCGA-68-8251-01 16 31088893 31088893 C T ZNF646 Silent p.L416L 0.42 TCGA-68-8251-01 16 67912718 67912718 G C EDC4 Silent p.L421L 0.36 TCGA-68-8251-01 16 70349911 70349911 G T DDX19B Missense_Mutation p.R67I 0.37 deleterious(0) benign(0.046) TCGA-68-8251-01 16 81968079 81968079 G A PLCG2 Missense_Mutation p.E929K 0.30 deleterious(0) possibly_damaging(0.653) TCGA-68-8251-01 17 15498104 15498104 A T RP11-385D13.1 Missense_Mutation p.V912E 0.25 deleterious_low_confidence(0.01) benign(0.333) TCGA-68-8251-01 17 18003938 18003938 C T DRG2 Missense_Mutation p.S199L 0.41 deleterious(0) benign(0.158) TCGA-68-8251-01 17 18024901 18024901 G A MYO15A Nonsense_Mutation p.W929* 0.29 TCGA-68-8251-01 17 18069762 18069762 G C MYO15A Missense_Mutation p.W3292S 0.30 unknown(0) TCGA-68-8251-01 17 19318168 19318168 G A RNF112 Missense_Mutation p.R365Q 0.31 tolerated(0.52) benign(0.017) TCGA-68-8251-01 17 26091157 26091157 G A NOS2 Silent p.V814V 0.27 TCGA-68-8251-01 17 26518099 26518099 G A NLK Missense_Mutation p.G430E 0.18 tolerated(0.08) possibly_damaging(0.456) TCGA-68-8251-01 17 27022543 27022543 G C SUPT6H Missense_Mutation p.M1316I 0.19 tolerated(0.34) benign(0.001) TCGA-68-8251-01 17 30692393 30692393 C G ZNF207 Missense_Mutation p.Q239E 0.27 tolerated(0.23) possibly_damaging(0.764) TCGA-68-8251-01 17 36717797 36717797 C T SRCIN1 Silent p.S534S 0.24 TCGA-68-8251-01 17 3788655 3788655 G A CAMKK1 Silent p.I109I 0.47 TCGA-68-8251-01 17 3844897 3844897 G A ATP2A3 Missense_Mutation p.R533C 0.45 deleterious(0.05) benign(0.371) TCGA-68-8251-01 17 38612855 38612855 G A IGFBP4 3'UTR 0.21 TCGA-68-8251-01 17 39021174 39021174 C T KRT12 Missense_Mutation p.D231N 0.27 deleterious(0.02) probably_damaging(1) TCGA-68-8251-01 17 40695215 40695215 C T NAGLU Silent p.F397F 0.23 TCGA-68-8251-01 17 40951022 40951022 G A CNTD1 5'UTR 0.29 TCGA-68-8251-01 17 41142988 41142988 C A RUNDC1 Missense_Mutation p.P366Q 0.21 tolerated(0.81) benign(0) TCGA-68-8251-01 17 42082082 42082082 G A NAGS Silent p.P17P 0.35 TCGA-68-8251-01 17 43214096 43214096 G C ACBD4 Missense_Mutation p.E83Q 0.21 tolerated(0.05) benign(0.237) TCGA-68-8251-01 17 45387536 45387536 C G ITGB3 Missense_Mutation p.S778C 0.25 deleterious(0) probably_damaging(0.997) TCGA-68-8251-01 17 45387599 45387599 C G ITGB3 3'UTR 0.29 TCGA-68-8251-01 17 46628467 46628467 G T HOXB3 Silent p.G175G 0.26 TCGA-68-8251-01 17 46805948 46805948 G T HOXB13 Missense_Mutation p.P3H 0.19 deleterious_low_confidence(0) benign(0.003) TCGA-68-8251-01 17 46919084 46919084 C G CALCOCO2 Missense_Mutation p.I5M 0.34 tolerated(0.26) benign(0.002) TCGA-68-8251-01 17 64224235 64224235 C A APOH Silent p.T48T 0.21 TCGA-68-8251-01 17 74158698 74158698 C T RNF157 Missense_Mutation p.G243R 0.12 tolerated(0.24) benign(0.028) TCGA-68-8251-01 17 74274114 74274114 G A QRICH2 Silent p.R1525R 0.26 TCGA-68-8251-01 17 74527116 74527116 C T CYGB Missense_Mutation p.V162M 0.27 tolerated(0.1) possibly_damaging(0.508) TCGA-68-8251-01 17 74562154 74562154 C G ST6GALNAC2 3'UTR 0.24 TCGA-68-8251-01 17 76046137 76046137 A C TNRC6C Missense_Mutation p.S332R 0.21 tolerated(0.07) benign(0.361) TCGA-68-8251-01 17 76471500 76471500 C G DNAH17 Missense_Mutation p.E2777Q 0.04 possibly_damaging(0.571) TCGA-68-8251-01 17 77808541 77808541 G A CBX4 Silent p.D300D 0.25 TCGA-68-8251-01 17 7798361 7798361 G A CHD3 Missense_Mutation p.G525R 0.30 probably_damaging(0.989) TCGA-68-8251-01 17 78073542 78073542 G A CCDC40 Missense_Mutation p.A1133T 0.17 tolerated(0.2) benign(0.087) TCGA-68-8251-01 17 8079186 8079186 G A TMEM107 Missense_Mutation p.P55S 0.32 tolerated_low_confidence(0.64) benign(0) TCGA-68-8251-01 18 14763746 14763746 G C ANKRD30B Silent p.T294T 0.27 TCGA-68-8251-01 18 28934615 28934615 G T DSG1 Missense_Mutation p.G819V 0.15 deleterious(0.05) possibly_damaging(0.856) TCGA-68-8251-01 18 29704735 29704735 A T RNF138 Missense_Mutation p.Q163L 0.19 deleterious(0.01) benign(0.218) TCGA-68-8251-01 18 31224921 31224921 A G ASXL3 Silent p.G67G 0.11 TCGA-68-8251-01 18 32843944 32843944 C G ZSCAN30 Missense_Mutation p.E125Q 0.19 deleterious(0) possibly_damaging(0.905) TCGA-68-8251-01 18 42643090 42643090 C T SETBP1 Silent p.A1406A 0.13 TCGA-68-8251-01 18 49867125 49867125 G C DCC 5'UTR 0.11 TCGA-68-8251-01 18 64172339 64172339 C G CDH19 Missense_Mutation p.E677Q 0.26 deleterious(0.03) benign(0.104) TCGA-68-8251-01 18 77246594 77246594 G A NFATC1 Silent p.S800S 0.16 TCGA-68-8251-01 19 10335054 10335054 G A S1PR2 Silent p.L176L 0.05 TCGA-68-8251-01 19 1095360 1095360 G A POLR2E 5'UTR 0.28 TCGA-68-8251-01 19 11240197 11240197 G A LDLR Missense_Mutation p.V800I 0.24 tolerated(0.23) benign(0.001) TCGA-68-8251-01 19 11474862 11474862 C A DKFZP761J1410 Nonsense_Mutation p.S305* 0.03 TCGA-68-8251-01 19 11665134 11665134 G A ELOF1 Missense_Mutation p.P10L 0.27 deleterious(0.02) possibly_damaging(0.793) TCGA-68-8251-01 19 14037666 14037666 C G CC2D1A Missense_Mutation p.I702M 0.18 tolerated(0.05) possibly_damaging(0.882) TCGA-68-8251-01 19 17039901 17039901 C T CPAMD8 Missense_Mutation p.E1046K 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-68-8251-01 19 17941369 17941369 G A JAK3 Silent p.F1013F 0.31 TCGA-68-8251-01 19 18420490 18420490 C A LSM4 Missense_Mutation p.R109L 0.26 deleterious(0.03) benign(0.25) TCGA-68-8251-01 19 18572544 18572544 C T ELL Silent p.V196V 0.22 TCGA-68-8251-01 19 2078238 2078238 G A MOB3A Missense_Mutation p.R108W 0.37 deleterious(0) probably_damaging(0.948) TCGA-68-8251-01 19 20807865 20807865 C G ZNF626 Missense_Mutation p.S273T 0.19 tolerated(1) benign(0.012) TCGA-68-8251-01 19 23836490 23836490 C G ZNF675 Missense_Mutation p.K415N 0.23 deleterious(0.03) probably_damaging(0.998) TCGA-68-8251-01 19 3057731 3057731 G A AES Silent p.L112L 0.28 TCGA-68-8251-01 19 36205963 36205963 T C ZBTB32 Silent p.P145P 0.21 TCGA-68-8251-01 19 36362860 36362860 G A APLP1 Missense_Mutation p.V258M 0.28 tolerated(0.13) probably_damaging(0.999) TCGA-68-8251-01 19 37147371 37147371 C T ZNF461 Missense_Mutation p.E71K 0.23 tolerated(0.89) benign(0.007) TCGA-68-8251-01 19 40900499 40900499 C G PRX Missense_Mutation p.A1254P 0.23 tolerated(0.17) possibly_damaging(0.82) TCGA-68-8251-01 19 40900519 40900519 A T PRX Nonsense_Mutation p.L1247* 0.24 TCGA-68-8251-01 19 43237001 43237001 T C PSG3 Missense_Mutation p.Y215C 0.27 deleterious(0) probably_damaging(0.998) TCGA-68-8251-01 19 44159674 44159674 C T PLAUR Missense_Mutation p.C175Y 0.25 deleterious(0) probably_damaging(0.996) TCGA-68-8251-01 19 47282002 47282002 G A SLC1A5 Missense_Mutation p.R330C 0.20 deleterious(0) probably_damaging(0.992) TCGA-68-8251-01 19 48845850 48845850 G C TMEM143 Silent p.L304L 0.18 TCGA-68-8251-01 19 49377535 49377535 G T PPP1R15A Missense_Mutation p.D349Y 0.27 deleterious(0) probably_damaging(0.99) TCGA-68-8251-01 19 49621622 49621622 C G LIN7B Missense_Mutation p.R206G 0.21 deleterious_low_confidence(0) benign(0.042) TCGA-68-8251-01 19 50360333 50360333 C T PTOV1 Silent p.Y220Y 0.21 TCGA-68-8251-01 19 50862349 50862349 C T NAPSA Silent p.S318S 0.16 TCGA-68-8251-01 19 55176286 55176286 C A LILRB4 Missense_Mutation p.S231Y 0.16 tolerated(0.59) benign(0.272) TCGA-68-8251-01 19 55603892 55603892 G A PPP1R12C Missense_Mutation p.S658L 0.19 tolerated(0.07) benign(0.023) TCGA-68-8251-01 19 56669920 56669920 C A ZNF444 Missense_Mutation p.Q119K 0.25 tolerated(0.17) benign(0.007) TCGA-68-8251-01 19 572612 572612 A G BSG 5'UTR 0.44 TCGA-68-8251-01 19 57327866 57327866 G A PEG3 Silent p.I648I 0.23 TCGA-68-8251-01 19 57642957 57642957 C A USP29 3'UTR 0.41 TCGA-68-8251-01 19 57646337 57646337 G A ZIM3 Silent p.F456F 0.27 TCGA-68-8251-01 19 7163161 7163161 C G INSR Missense_Mutation p.Q637H 0.27 tolerated(0.42) possibly_damaging(0.903) TCGA-68-8251-01 1 10035822 10035822 G - NMNAT1 Frame_Shift_Del p.K97Rfs*3 0.20 TCGA-68-8251-01 1 10356718 10356718 G A KIF1B Missense_Mutation p.R573H 0.31 tolerated(0.33) probably_damaging(0.995) TCGA-68-8251-01 1 10713735 10713735 C T CASZ1 Silent p.S793S 0.09 TCGA-68-8251-01 1 114253074 114253074 A G PHTF1 Silent p.G357G 0.14 TCGA-68-8251-01 1 116311116 116311116 G C CASQ2 Missense_Mutation p.S16C 0.25 tolerated(0.19) benign(0.004) TCGA-68-8251-01 1 117568308 117568308 G T CD101 Missense_Mutation p.G869V 0.14 deleterious(0) probably_damaging(0.987) TCGA-68-8251-01 1 12009852 12009852 G T PLOD1 Missense_Mutation p.W64L 0.31 deleterious(0) probably_damaging(1) TCGA-68-8251-01 1 120496275 120496275 G C NOTCH2 Missense_Mutation p.I752M 0.29 tolerated(0.08) benign(0.081) TCGA-68-8251-01 1 150484191 150484191 C T ECM1 Missense_Mutation p.R350C 0.27 deleterious(0) probably_damaging(0.997) TCGA-68-8251-01 1 151501959 151501959 G A CGN Missense_Mutation p.R677Q 0.23 tolerated(0.42) benign(0.005) TCGA-68-8251-01 1 155737282 155737282 C G GON4L Missense_Mutation p.E899D 0.22 tolerated(0.13) probably_damaging(0.979) TCGA-68-8251-01 1 157666055 157666055 C G FCRL3 Missense_Mutation p.E303Q 0.23 tolerated(0.33) possibly_damaging(0.474) TCGA-68-8251-01 1 159899165 159899165 G C IGSF9 Missense_Mutation p.S782C 0.21 deleterious(0) possibly_damaging(0.664) TCGA-68-8251-01 1 160162646 160162646 G C CASQ1 Missense_Mutation p.E112Q 0.22 tolerated(0.2) benign(0.004) TCGA-68-8251-01 1 160263006 160263006 G A COPA Nonsense_Mutation p.Q934* 0.20 TCGA-68-8251-01 1 160769604 160769604 C T LY9 Silent p.S62S 0.21 TCGA-68-8251-01 1 162769578 162769578 C G HSD17B7 Missense_Mutation p.Q165E 0.17 deleterious(0.03) benign(0.297) TCGA-68-8251-01 1 163131754 163131754 G A RGS5 Silent p.D56D 0.29 TCGA-68-8251-01 1 16374913 16374913 G C CLCNKB Missense_Mutation p.E192Q 0.17 tolerated(0.12) benign(0.177) TCGA-68-8251-01 1 169510691 169510691 G A F5 Missense_Mutation p.L1213F 0.25 tolerated_low_confidence(0.5) benign(0.012) TCGA-68-8251-01 1 169670745 169670745 G T SELL Missense_Mutation p.S359Y 0.25 deleterious(0.01) benign(0.316) TCGA-68-8251-01 1 175066773 175066773 G C TNN Missense_Mutation p.Q603H 0.23 tolerated(0.51) possibly_damaging(0.866) TCGA-68-8251-01 1 181741227 181741227 G C CACNA1E Missense_Mutation p.E1667Q 0.21 deleterious(0) possibly_damaging(0.728) TCGA-68-8251-01 1 196309532 196309532 C A KCNT2 Silent p.V574V 0.14 TCGA-68-8251-01 1 207753635 207753635 C G CR1 Missense_Mutation p.Q1663E 0.20 deleterious(0.03) possibly_damaging(0.482) TCGA-68-8251-01 1 216498712 216498712 T A USH2A Missense_Mutation p.T360S 0.31 benign(0.042) TCGA-68-8251-01 1 22140976 22140976 C T LDLRAD2 Silent p.F57F 0.10 TCGA-68-8251-01 1 22336335 22336335 C T CELA3A Silent p.I260I 0.16 TCGA-68-8251-01 1 228433167 228433167 G C OBSCN Missense_Mutation p.E1271Q 0.04 benign(0.265) TCGA-68-8251-01 1 228459752 228459752 A C OBSCN Missense_Mutation p.E1939A 0.26 probably_damaging(0.993) TCGA-68-8251-01 1 235345338 235345338 C G ARID4B Missense_Mutation p.E966Q 0.27 tolerated_low_confidence(0.18) possibly_damaging(0.678) TCGA-68-8251-01 1 247752149 247752149 C A OR2G2 Missense_Mutation p.S163Y 0.24 deleterious(0) probably_damaging(0.961) TCGA-68-8251-01 1 247978237 247978239 AGA - OR14A16 In_Frame_Del p.S265del 0.08 TCGA-68-8251-01 1 29189291 29189291 C A OPRD1 Silent p.P205P 0.20 TCGA-68-8251-01 1 37267376 37267376 C A GRIK3 3'UTR 0.30 TCGA-68-8251-01 1 38444702 38444702 C T SF3A3 Missense_Mutation p.R262K 0.22 tolerated(0.27) possibly_damaging(0.844) TCGA-68-8251-01 1 41094541 41094541 C T RIMS3 Missense_Mutation p.D219N 0.21 deleterious_low_confidence(0.02) benign(0.258) TCGA-68-8251-01 1 45811014 45811014 C T TESK2 Missense_Mutation p.R405H 0.30 deleterious(0) probably_damaging(0.999) TCGA-68-8251-01 1 46726537 46726537 G C RAD54L Missense_Mutation p.E206Q 0.12 tolerated(0.29) possibly_damaging(0.529) TCGA-68-8251-01 1 50885019 50885019 G - DMRTA2 Frame_Shift_Del p.P316Rfs*5 0.22 TCGA-68-8251-01 1 57499216 57499216 G A DAB1 Intron 0.34 TCGA-68-8251-01 1 65268710 65268710 C G RAVER2 Missense_Mutation p.S386C 0.04 deleterious(0.01) possibly_damaging(0.879) TCGA-68-8251-01 1 76190436 76190436 G T ACADM 5'Flank 0.23 TCGA-68-8251-01 1 85736425 85736425 T G BCL10 Missense_Mutation p.E74D 0.17 tolerated(0.13) benign(0.412) TCGA-68-8251-01 1 94037318 94037318 C T BCAR3 Missense_Mutation p.S628N 0.10 tolerated(0.8) benign(0) TCGA-68-8251-01 20 11903528 11903528 C T BTBD3 Silent p.F261F 0.24 TCGA-68-8251-01 20 16385547 16385547 C G KIF16B Splice_Site p.X566_splice 0.12 TCGA-68-8251-01 20 24930183 24930183 C G CST7 Silent p.V14V 0.19 TCGA-68-8251-01 20 2846945 2846945 G A VPS16 Missense_Mutation p.A787T 0.21 tolerated(0.36) probably_damaging(0.978) TCGA-68-8251-01 20 33868521 33868521 G A EIF6 Missense_Mutation p.S102L 0.26 deleterious(0) probably_damaging(0.992) TCGA-68-8251-01 20 36149640 36149640 C A NNAT 5'UTR 0.05 TCGA-68-8251-01 20 52198501 52198501 G A ZNF217 Nonsense_Mutation p.Q289* 0.32 TCGA-68-8251-01 20 62340164 62340164 G C ZGPAT Missense_Mutation p.E78Q 0.25 deleterious(0) probably_damaging(0.912) TCGA-68-8251-01 20 62575899 62575899 T C UCKL1 Silent p.R281R 0.15 TCGA-68-8251-01 21 31864143 31864143 C A KRTAP19-3 Nonsense_Mutation p.G45* 0.14 TCGA-68-8251-01 21 45560138 45560138 G A C21orf33 Silent p.T145T 0.23 TCGA-68-8251-01 22 18301172 18301172 G A MICAL3 Missense_Mutation p.R1419C 0.12 possibly_damaging(0.632) TCGA-68-8251-01 22 19076971 19076971 G A DGCR2 Missense_Mutation p.R38C 0.12 deleterious_low_confidence(0.02) possibly_damaging(0.79) TCGA-68-8251-01 22 19708129 19708129 G T SEPT5 Silent p.V185V 0.19 TCGA-68-8251-01 22 23655112 23655112 G A BCR Missense_Mutation p.V1121M 0.13 deleterious(0) benign(0.113) TCGA-68-8251-01 22 28193982 28193982 C G MN1 Missense_Mutation p.K850N 0.13 probably_damaging(0.998) TCGA-68-8251-01 22 29445348 29445348 C T ZNRF3 Silent p.P393P 0.13 TCGA-68-8251-01 22 42205989 42205989 C G CCDC134 Silent p.L70L 0.17 TCGA-68-8251-01 22 42209443 42209443 C G CCDC134 Silent p.L162L 0.20 TCGA-68-8251-01 22 47082995 47082995 C T CERK 3'UTR 0.17 TCGA-68-8251-01 22 50439241 50439241 G A IL17REL Missense_Mutation p.T54M 0.33 tolerated(0.07) benign(0.33) TCGA-68-8251-01 22 50719545 50719545 G A PLXNB2 Missense_Mutation p.R1246W 0.30 deleterious(0) probably_damaging(0.999) TCGA-68-8251-01 22 50724601 50724601 C T PLXNB2 Splice_Site p.X626_splice 0.12 TCGA-68-8251-01 2 108477252 108477252 C T RGPD4 Nonsense_Mutation p.R597* 0.09 TCGA-68-8251-01 2 133541863 133541863 G T NCKAP5 Missense_Mutation p.P841T 0.33 tolerated(0.21) benign(0.187) TCGA-68-8251-01 2 138400060 138400060 C T THSD7B Nonsense_Mutation p.R1271* 0.04 TCGA-68-8251-01 2 1488494 1488494 G A TPO Missense_Mutation p.A489T 0.11 deleterious(0) probably_damaging(0.999) TCGA-68-8251-01 2 160737596 160737596 C T LY75-CD302 Missense_Mutation p.E468K 0.28 tolerated(1) benign(0.001) TCGA-68-8251-01 2 167138260 167138260 T - SCN9A Frame_Shift_Del p.D667Vfs*3 0.13 TCGA-68-8251-01 2 169684929 169684929 G C NOSTRIN Splice_Site p.X87_splice 0.12 TCGA-68-8251-01 2 174130924 174130924 C T MLTK Missense_Mutation p.R617W 0.27 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-68-8251-01 2 179429287 179429287 C T TTN Nonsense_Mutation p.W27191* 0.12 TCGA-68-8251-01 2 179454896 179454896 C A TTN Missense_Mutation p.R20519L 0.22 TCGA-68-8251-01 2 183622424 183622424 A T DNAJC10 Missense_Mutation p.L605F 0.24 tolerated(0.12) probably_damaging(0.97) TCGA-68-8251-01 2 190316528 190316528 C G WDR75 Intron 0.11 TCGA-68-8251-01 2 202136259 202136259 C T CASP8 Missense_Mutation p.S168L 0.24 deleterious(0) possibly_damaging(0.767) TCGA-68-8251-01 2 202590144 202590144 C T ALS2 Missense_Mutation p.M1094I 0.12 tolerated(0.12) benign(0) TCGA-68-8251-01 2 202590163 202590163 C G ALS2 Missense_Mutation p.R1088T 0.12 tolerated(0.28) benign(0.002) TCGA-68-8251-01 2 202687559 202687559 C G CDK15 Missense_Mutation p.A159G 0.27 deleterious(0.01) probably_damaging(0.994) TCGA-68-8251-01 2 207172828 207172828 T C ZDBF2 Silent p.N1192N 0.14 TCGA-68-8251-01 2 210558655 210558655 G T MAP2 Missense_Mutation p.E587D 0.14 deleterious_low_confidence(0.01) benign(0.065) TCGA-68-8251-01 2 220134935 220134935 C A TUBA4B RNA 0.45 TCGA-68-8251-01 2 220435865 220435865 C T OBSL1 Silent p.E30E 0.47 TCGA-68-8251-01 2 234627963 234627963 C T UGT1A4 Missense_Mutation p.S166L 0.24 deleterious(0.02) possibly_damaging(0.512) TCGA-68-8251-01 2 238274382 238274382 A C COL6A3 Missense_Mutation p.Y1933D 0.14 probably_damaging(0.969) TCGA-68-8251-01 2 238287433 238287433 C T COL6A3 Silent p.A781A 0.26 TCGA-68-8251-01 2 48050387 48050387 C T FBXO11 Missense_Mutation p.G504E 0.12 deleterious(0) probably_damaging(1) TCGA-68-8251-01 2 672808 672808 C G TMEM18 Missense_Mutation p.R78T 0.28 deleterious(0) possibly_damaging(0.904) TCGA-68-8251-01 2 71883377 71883377 C T DYSF Missense_Mutation p.T1571M 0.20 deleterious(0.03) probably_damaging(0.925) TCGA-68-8251-01 2 71887721 71887721 A G DYSF Missense_Mutation p.K1648R 0.22 tolerated(0.15) benign(0.026) TCGA-68-8251-01 2 90060781 90060781 G A IGKV6D-21 Missense_Mutation p.R43Q 0.38 tolerated(0.14) benign(0.009) TCGA-68-8251-01 2 90260245 90260245 C A IGKV1D-8 Missense_Mutation p.F116L 0.11 tolerated(0.52) benign(0.001) TCGA-68-8251-01 2 99725408 99725408 C G TSGA10 Missense_Mutation p.R33P 0.29 deleterious(0.01) probably_damaging(0.981) TCGA-68-8251-01 3 114070511 114070511 G T ZBTB20 Missense_Mutation p.S138R 0.04 deleterious(0) probably_damaging(0.992) TCGA-68-8251-01 3 121158849 121158849 C A POLQ Missense_Mutation p.R2460L 0.33 tolerated(0.76) benign(0.003) TCGA-68-8251-01 3 127318242 127318242 C T MCM2 Nonsense_Mutation p.R30* 0.21 TCGA-68-8251-01 3 128603580 128603580 A C ACAD9 Missense_Mutation p.T79P 0.13 tolerated(0.09) benign(0.319) TCGA-68-8251-01 3 128758631 128758631 G T EFCC1 Missense_Mutation p.Q579H 0.12 tolerated(0.07) benign(0.003) TCGA-68-8251-01 3 128758632 128758632 C T EFCC1 Missense_Mutation p.P580S 0.12 tolerated(0.15) benign(0.067) TCGA-68-8251-01 3 129238493 129238493 G A IFT122 Missense_Mutation p.R1236Q 0.42 deleterious(0.04) possibly_damaging(0.476) TCGA-68-8251-01 3 129389291 129389291 C T TMCC1 Missense_Mutation p.E465K 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-68-8251-01 3 142503821 142503821 G C TRPC1 Missense_Mutation p.K412N 0.25 tolerated(0.22) benign(0.102) TCGA-68-8251-01 3 151154525 151154525 C G IGSF10 Missense_Mutation p.K2608N 0.19 deleterious(0.02) benign(0.114) TCGA-68-8251-01 3 155629014 155629014 C T GMPS Nonsense_Mutation p.R278* 0.18 TCGA-68-8251-01 3 185823424 185823424 G A ETV5 Silent p.H41H 0.20 TCGA-68-8251-01 3 186256549 186256549 C G CRYGS Missense_Mutation p.R158P 0.16 deleterious(0.01) benign(0.092) TCGA-68-8251-01 3 193125168 193125168 G A ATP13A4 Silent p.P1104P 0.10 TCGA-68-8251-01 3 39166888 39166888 G A TTC21A Silent p.A427A 0.06 TCGA-68-8251-01 3 46009295 46009295 G C FYCO1 Missense_Mutation p.L511V 0.04 deleterious(0.01) possibly_damaging(0.843) TCGA-68-8251-01 3 73434005 73434005 A T PDZRN3 Missense_Mutation p.V571E 0.20 deleterious(0) probably_damaging(0.958) TCGA-68-8251-01 3 96706678 96706678 G C EPHA6 Missense_Mutation p.D319H 0.04 deleterious(0) probably_damaging(1) TCGA-68-8251-01 3 97598592 97598592 G A CRYBG3 Silent p.K348K 0.20 TCGA-68-8251-01 3 98073311 98073311 C A OR5K4 Missense_Mutation p.P205Q 0.18 tolerated(0.06) possibly_damaging(0.532) TCGA-68-8251-01 4 102942719 102942719 G T BANK1 Missense_Mutation p.D419Y 0.23 deleterious(0) possibly_damaging(0.847) TCGA-68-8251-01 4 110447539 110447539 A G SEC24B Silent p.L983L 0.11 TCGA-68-8251-01 4 152609907 152609907 G C PET112 Silent p.V402V 0.26 TCGA-68-8251-01 4 157689088 157689088 C T PDGFC Missense_Mutation p.R253H 0.12 deleterious(0) probably_damaging(1) TCGA-68-8251-01 4 16010677 16010677 C T PROM1 Missense_Mutation p.R399H 0.26 tolerated(0.14) benign(0.011) TCGA-68-8251-01 4 186180069 186180069 A C SNX25 Missense_Mutation p.Q30H 0.19 tolerated(0.11) benign(0.366) TCGA-68-8251-01 4 187524450 187524450 G C FAT1 Missense_Mutation p.P3744A 0.31 probably_damaging(0.999) TCGA-68-8251-01 4 2172908 2172908 C A POLN Missense_Mutation p.A459S 0.13 tolerated(0.45) benign(0.034) TCGA-68-8251-01 4 2306526 2306526 G A ZFYVE28 Missense_Mutation p.S514L 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-68-8251-01 4 24550530 24550530 C T DHX15 Missense_Mutation p.R399H 0.19 deleterious(0) probably_damaging(0.96) TCGA-68-8251-01 4 25005880 25005880 G A LGI2 Silent p.I277I 0.18 TCGA-68-8251-01 4 3424172 3424172 G C RGS12 Missense_Mutation p.D970H 0.12 deleterious(0) probably_damaging(1) TCGA-68-8251-01 4 47563041 47563041 G C ATP10D Missense_Mutation p.E873Q 0.24 tolerated(0.13) benign(0.364) TCGA-68-8251-01 4 54249967 54249967 G A FIP1L1 Missense_Mutation p.D86N 0.35 tolerated(0.07) benign(0.018) TCGA-68-8251-01 4 77692006 77692006 G C SHROOM3 Missense_Mutation p.E1859D 0.09 deleterious(0) probably_damaging(0.986) TCGA-68-8251-01 5 112389605 112389605 G A MCC Silent p.D755D 0.32 TCGA-68-8251-01 5 118877718 118877718 G T HSD17B4 3'UTR 0.35 TCGA-68-8251-01 5 135398968 135398968 C G TGFBI 3'UTR 0.38 TCGA-68-8251-01 5 136448252 136448252 T C SPOCK1 Splice_Site p.X116_splice 0.30 TCGA-68-8251-01 5 138661312 138661312 G A MATR3 Missense_Mutation p.E778K 0.33 tolerated(0.11) benign(0.031) TCGA-68-8251-01 5 140174616 140174616 G A PCDHA2 Missense_Mutation p.A23T 0.32 deleterious_low_confidence(0.03) benign(0.082) TCGA-68-8251-01 5 140208410 140208410 C G PCDHA6 Missense_Mutation p.S245C 0.29 deleterious_low_confidence(0) possibly_damaging(0.797) TCGA-68-8251-01 5 156649923 156649923 C T ITK Silent p.Y182Y 0.23 TCGA-68-8251-01 5 174156674 174156674 C G MSX2 3'UTR 0.10 TCGA-68-8251-01 5 178293316 178293316 G C ZNF354B Missense_Mutation p.Q35H 0.23 deleterious(0) probably_damaging(1) TCGA-68-8251-01 5 65465975 65465975 G T SREK1 Missense_Mutation p.K366N 0.30 tolerated(0.08) unknown(0) TCGA-68-8251-01 5 75866424 75866424 G A IQGAP2 Missense_Mutation p.R108Q 0.31 deleterious(0) probably_damaging(0.981) TCGA-68-8251-01 5 79446728 79446728 G A SERINC5 Nonsense_Mutation p.R344* 0.38 TCGA-68-8251-01 5 9154718 9154718 G A SEMA5A Missense_Mutation p.R455W 0.23 deleterious(0.01) possibly_damaging(0.766) TCGA-68-8251-01 6 110540577 110540577 A G CDC40 Missense_Mutation p.I367M 0.30 deleterious(0.02) possibly_damaging(0.853) TCGA-68-8251-01 6 111665171 111665171 G C REV3L Missense_Mutation p.R2499G 0.05 deleterious(0) probably_damaging(0.999) TCGA-68-8251-01 6 11213758 11213758 G A NEDD9 Missense_Mutation p.S72F 0.39 tolerated(0.09) possibly_damaging(0.498) TCGA-68-8251-01 6 116289775 116289775 G A FRK Silent p.D198D 0.19 TCGA-68-8251-01 6 133844288 133844288 G T EYA4 Nonsense_Mutation p.E571* 0.22 TCGA-68-8251-01 6 142399695 142399695 T - NMBR Frame_Shift_Del p.K256Nfs*45 0.29 TCGA-68-8251-01 6 147123932 147123932 C G ADGB Intron 0.05 TCGA-68-8251-01 6 154411125 154411125 A T OPRM1 Missense_Mutation p.N245I 0.19 deleterious(0) probably_damaging(0.997) TCGA-68-8251-01 6 155148320 155148320 C T SCAF8 Missense_Mutation p.P696S 0.25 tolerated(0.11) probably_damaging(0.998) TCGA-68-8251-01 6 155153600 155153600 C T SCAF8 Missense_Mutation p.H963Y 0.27 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-68-8251-01 6 155153738 155153738 C A SCAF8 Missense_Mutation p.Q1009K 0.23 deleterious_low_confidence(0.01) probably_damaging(0.966) TCGA-68-8251-01 6 155154570 155154570 C T SCAF8 3'UTR 0.20 TCGA-68-8251-01 6 158535967 158535967 G A SERAC1 Missense_Mutation p.T513M 0.22 tolerated(0.1) benign(0.034) TCGA-68-8251-01 6 165746548 165746548 G C PDE10A Missense_Mutation p.S779C 0.12 deleterious_low_confidence(0.01) benign(0.001) TCGA-68-8251-01 6 31830606 31830606 T A NEU1 5'UTR 0.50 TCGA-68-8251-01 6 35261605 35261605 C T ZNF76 Silent p.L469L 0.20 TCGA-68-8251-01 6 394890 394890 C A IRF4 Missense_Mutation p.R96S 0.46 deleterious(0.03) possibly_damaging(0.651) TCGA-68-8251-01 6 43497009 43497009 G A XPO5 Intron 0.07 TCGA-68-8251-01 6 51907772 51907772 C T PKHD1 Silent p.R994R 0.17 TCGA-68-8251-01 6 69349041 69349041 G A BAI3 Silent p.L158L 0.19 TCGA-68-8251-01 6 79668231 79668231 G T PHIP Missense_Mutation p.S1248Y 0.24 deleterious(0) possibly_damaging(0.757) TCGA-68-8251-01 7 100680145 100680145 C T MUC17 Silent p.S1816S 0.13 TCGA-68-8251-01 7 1015201 1015201 G A COX19 5'UTR 0.40 TCGA-68-8251-01 7 104681348 104681348 G C KMT2E 5'UTR 0.21 TCGA-68-8251-01 7 105192141 105192141 C G RINT1 Silent p.L486L 0.25 TCGA-68-8251-01 7 12254639 12254639 G A TMEM106B Missense_Mutation p.G68E 0.12 deleterious(0) probably_damaging(1) TCGA-68-8251-01 7 139801773 139801773 A G KDM7A Missense_Mutation p.L539S 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-68-8251-01 7 140285495 140285495 T A DENND2A Missense_Mutation p.E380V 0.25 deleterious(0) probably_damaging(0.988) TCGA-68-8251-01 7 142099708 142099708 C T TRBV7-8 Missense_Mutation p.A32T 0.29 tolerated(1) benign(0.001) TCGA-68-8251-01 7 142364517 142364517 T C TRBV24-1 Missense_Mutation p.M51T 0.16 deleterious(0.01) probably_damaging(0.986) TCGA-68-8251-01 7 143141241 143141241 A T TAS2R60 Silent p.S232S 0.18 TCGA-68-8251-01 7 150027752 150027752 G A ZBED6CL Missense_Mutation p.A87T 0.05 tolerated(0.07) benign(0.415) TCGA-68-8251-01 7 150174659 150174659 C T GIMAP8 Nonsense_Mutation p.R597* 0.28 TCGA-68-8251-01 7 150325083 150325083 G T GIMAP6 Missense_Mutation p.N201K 0.14 deleterious(0) probably_damaging(0.997) TCGA-68-8251-01 7 150720548 150720548 C A ATG9B Missense_Mutation p.D215Y 0.28 deleterious(0.02) probably_damaging(0.992) TCGA-68-8251-01 7 150746323 150746323 G A ASIC3 Silent p.L117L 0.22 TCGA-68-8251-01 7 20403343 20403343 G C ITGB8 Missense_Mutation p.E71Q 0.14 deleterious(0.02) possibly_damaging(0.658) TCGA-68-8251-01 7 21943858 21943858 C T CDCA7L Missense_Mutation p.C356Y 0.17 deleterious(0) probably_damaging(1) TCGA-68-8251-01 7 26225377 26225377 G C NFE2L3 Missense_Mutation p.E687Q 0.14 tolerated(0.09) possibly_damaging(0.664) TCGA-68-8251-01 7 27868274 27868274 C T TAX1BP1 Silent p.L732L 0.13 TCGA-68-8251-01 7 28848971 28848971 C T CREB5 Silent p.V398V 0.14 TCGA-68-8251-01 7 57509975 57509975 C T ZNF716 5'UTR 0.17 TCGA-68-8251-01 7 6012950 6012951 - A PMS2 3'UTR 0.13 TCGA-68-8251-01 7 6048728 6048728 C T PMS2 5'UTR 0.38 TCGA-68-8251-01 7 73653267 73653267 C G RFC2 Missense_Mutation p.E249Q 0.25 deleterious(0.03) benign(0.064) TCGA-68-8251-01 7 73770889 73770889 C G CLIP2 Missense_Mutation p.S318C 0.15 deleterious(0) probably_damaging(0.966) TCGA-68-8251-01 7 73771612 73771612 C G CLIP2 Silent p.L340L 0.09 TCGA-68-8251-01 7 7514244 7514244 G A COL28A1 Silent p.I430I 0.26 TCGA-68-8251-01 7 81386616 81386616 T C HGF Missense_Mutation p.Y124C 0.11 deleterious(0) probably_damaging(1) TCGA-68-8251-01 7 82581817 82581817 G A PCLO Missense_Mutation p.H2818Y 0.41 unknown(0) TCGA-68-8251-01 7 82582789 82582789 G C PCLO Missense_Mutation p.P2494A 0.30 unknown(0) TCGA-68-8251-01 7 82582906 82582906 G C PCLO Missense_Mutation p.L2455V 0.33 unknown(0) TCGA-68-8251-01 7 92921063 92921063 G T CCDC132 Missense_Mutation p.A331S 0.19 tolerated(0.22) possibly_damaging(0.683) TCGA-68-8251-01 7 99129222 99129222 C G ZKSCAN5 Missense_Mutation p.Q624E 0.19 tolerated(0.17) probably_damaging(0.989) TCGA-68-8251-01 7 99129834 99129834 C T ZKSCAN5 Missense_Mutation p.P828S 0.30 tolerated(0.13) benign(0.002) TCGA-68-8251-01 8 108276574 108276574 T C ANGPT1 Missense_Mutation p.Y404C 0.22 tolerated(0.17) probably_damaging(0.974) TCGA-68-8251-01 8 109482115 109482115 C T EMC2 Missense_Mutation p.R142W 0.17 deleterious(0.03) possibly_damaging(0.582) TCGA-68-8251-01 8 117875482 117875482 C T RAD21 Missense_Mutation p.R54Q 0.18 deleterious(0) probably_damaging(0.988) TCGA-68-8251-01 8 121463249 121463249 C T MTBP Missense_Mutation p.S69L 0.20 deleterious(0.02) benign(0.017) TCGA-68-8251-01 8 144895819 144895819 C T SCRIB Missense_Mutation p.G145E 0.05 probably_damaging(1) TCGA-68-8251-01 8 145024580 145024580 G A PLEC Missense_Mutation p.R99C 0.19 unknown(0) TCGA-68-8251-01 8 145638738 145638738 C A SLC39A4 Missense_Mutation p.D504Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-68-8251-01 8 1950787 1950787 C T KBTBD11 Missense_Mutation p.R477C 0.30 deleterious(0) probably_damaging(0.943) TCGA-68-8251-01 8 2813124 2813124 C A CSMD1 Silent p.S3327S 0.17 TCGA-68-8251-01 8 42045042 42045042 G A PLAT Missense_Mutation p.T138M 0.30 tolerated(0.07) possibly_damaging(0.699) TCGA-68-8251-01 8 54142094 54142094 G A OPRK1 Silent p.T302T 0.05 TCGA-68-8251-01 8 55372554 55372554 G A SOX17 Silent p.%3D 0.22 TCGA-68-8251-01 8 623550 623550 C G ERICH1 Missense_Mutation p.D268H 0.28 tolerated_low_confidence(0.1) possibly_damaging(0.557) TCGA-68-8251-01 8 81553578 81553578 G A ZNF704 3'UTR 0.27 TCGA-68-8251-01 8 8235529 8235529 G A SGK223 Silent p.V130V 0.36 TCGA-68-8251-01 9 100887062 100887062 C T CORO2A Silent p.Q524Q 0.41 TCGA-68-8251-01 9 112018500 112018500 C G EPB41L4B Missense_Mutation p.R282T 0.05 deleterious(0) possibly_damaging(0.872) TCGA-68-8251-01 9 123739105 123739105 C T C5 Missense_Mutation p.R1246H 0.32 tolerated(0.47) benign(0.005) TCGA-68-8251-01 9 136216772 136216772 C G RPL7A Missense_Mutation p.Q94E 0.32 tolerated(0.06) benign(0.126) TCGA-68-8251-01 9 138590844 138590844 C G SOHLH1 Missense_Mutation p.R65P 0.32 deleterious(0) probably_damaging(0.933) TCGA-68-8251-01 9 139820295 139820304 CCTACGTGCG - TRAF2 Frame_Shift_Del p.S483Wfs*13 0.23 TCGA-68-8251-01 9 140053153 140053153 G T GRIN1 Silent p.L419L 0.37 TCGA-68-8251-01 9 16435559 16435559 C T BNC2 Missense_Mutation p.R878Q 0.35 deleterious(0) probably_damaging(0.996) TCGA-68-8251-01 9 16436154 16436154 C A BNC2 Nonsense_Mutation p.E680* 0.37 TCGA-68-8251-01 9 35612958 35612958 G A CD72 Nonsense_Mutation p.Q241* 0.29 TCGA-68-8251-01 9 6984249 6984249 T A KDM4C Missense_Mutation p.V400D 0.33 tolerated(0.29) benign(0.001) TCGA-68-8251-01 9 98279109 98279109 C T RP11-435O5.4 3'Flank 0.32 TCGA-68-8251-01 X 103495405 103495405 G A ESX1 Missense_Mutation p.P242L 0.45 deleterious(0.01) unknown(0) TCGA-68-8251-01 X 122551430 122551430 G C GRIA3 Missense_Mutation p.V560L 0.21 tolerated(0.07) possibly_damaging(0.897) TCGA-68-8251-01 X 152960070 152960070 C T SLC6A8 Silent p.F526F 0.41 TCGA-68-8251-01 X 155004096 155004096 T A SPRY3 Missense_Mutation p.L188H 0.05 deleterious(0) probably_damaging(0.996) TCGA-68-8251-01 X 48896697 48896697 C T TFE3 Missense_Mutation p.V157I 0.46 tolerated(0.4) unknown(0) TCGA-68-8251-01 X 53423181 53423181 G A SMC1A Missense_Mutation p.S943L 0.06 tolerated(1) benign(0.001) TCGA-68-8251-01 X 55290345 55290345 C T PAGE3 5'UTR 0.44 TCGA-68-A59J-01 10 118138878 118138878 A G CCDC172 3'UTR 0.31 TCGA-68-A59J-01 10 15879266 15879266 C A FAM188A Missense_Mutation p.Q171H 0.31 tolerated(0.34) benign(0.006) TCGA-68-A59J-01 10 17891740 17891740 C G MRC1L1 Missense_Mutation p.F407L 0.37 benign(0.012) TCGA-68-A59J-01 10 18138656 18138656 C T MRC1 Silent p.I404I 0.16 TCGA-68-A59J-01 10 20290886 20290886 G T PLXDC2 Missense_Mutation p.D99Y 0.36 deleterious(0.03) possibly_damaging(0.653) TCGA-68-A59J-01 10 26463411 26463411 C G MYO3A Missense_Mutation p.I1406M 0.27 tolerated_low_confidence(0.26) benign(0.007) TCGA-68-A59J-01 10 31750085 31750085 G T ZEB1 Missense_Mutation p.D60Y 0.45 deleterious(0) possibly_damaging(0.841) TCGA-68-A59J-01 10 33491905 33491905 G C NRP1 Missense_Mutation p.T593S 0.47 tolerated(0.13) probably_damaging(0.976) TCGA-68-A59J-01 10 52610550 52610550 A T A1CF 5'UTR 0.32 TCGA-68-A59J-01 10 67829173 67829173 C G CTNNA3 Missense_Mutation p.K684N 0.13 deleterious(0) unknown(0) TCGA-68-A59J-01 10 68526027 68526027 C T CTNNA3 Missense_Mutation p.V426I 0.38 tolerated(0.46) benign(0.003) TCGA-68-A59J-01 10 73375331 73375331 G C CDH23 Silent p.R301R 0.38 TCGA-68-A59J-01 10 74890625 74890625 G T NUDT13 Missense_Mutation p.W341C 0.13 deleterious(0) probably_damaging(1) TCGA-68-A59J-01 10 99361705 99361705 T C HOGA1 Silent p.D264D 0.24 TCGA-68-A59J-01 10 99400511 99400511 G T PI4K2A Silent p.T4T 0.22 TCGA-68-A59J-01 11 123900742 123900742 G A OR10G8 Missense_Mutation p.R138H 0.40 deleterious(0.01) possibly_damaging(0.708) TCGA-68-A59J-01 11 124294639 124294639 C A OR8B4 Missense_Mutation p.L43F 0.32 deleterious_low_confidence(0.04) benign(0.255) TCGA-68-A59J-01 11 125550663 125550663 G T ACRV1 Missense_Mutation p.L5I 0.19 tolerated(0.38) benign(0.034) TCGA-68-A59J-01 11 14497351 14497351 G A COPB1 Silent p.P532P 0.36 TCGA-68-A59J-01 11 40137179 40137179 C G LRRC4C Missense_Mutation p.D222H 0.48 deleterious(0) possibly_damaging(0.74) TCGA-68-A59J-01 11 5289721 5289721 G T HBE1 Missense_Mutation p.A141D 0.32 deleterious(0) probably_damaging(0.943) TCGA-68-A59J-01 11 57427353 57427353 C G CLP1 Silent p.L135L 0.13 TCGA-68-A59J-01 11 5968651 5968651 C A OR56A3 Silent p.P25P 0.40 TCGA-68-A59J-01 11 62374446 62374446 G A EML3 Silent p.G496G 0.16 TCGA-68-A59J-01 11 6477902 6477902 C A TRIM3 Missense_Mutation p.G352W 0.37 deleterious(0) probably_damaging(1) TCGA-68-A59J-01 11 65393410 65393410 G T PCNXL3 Silent p.G1088G 0.26 TCGA-68-A59J-01 11 6588639 6588639 C G DNHD1 Missense_Mutation p.T3967R 0.33 possibly_damaging(0.668) TCGA-68-A59J-01 11 67430857 67430857 C A ALDH3B2 Missense_Mutation p.M329I 0.38 tolerated(0.11) benign(0.015) TCGA-68-A59J-01 11 67430858 67430858 A T ALDH3B2 Missense_Mutation p.M329K 0.38 deleterious(0) possibly_damaging(0.513) TCGA-68-A59J-01 11 68029241 68029241 G A C11orf24 Missense_Mutation p.L408F 0.06 tolerated(0.08) probably_damaging(0.934) TCGA-68-A59J-01 11 68675645 68675645 G C IGHMBP2 Missense_Mutation p.E97Q 0.13 tolerated(0.59) benign(0.01) TCGA-68-A59J-01 11 68675711 68675711 G A IGHMBP2 Missense_Mutation p.D119N 0.11 deleterious(0) possibly_damaging(0.881) TCGA-68-A59J-01 11 68676093 68676093 G A IGHMBP2 Missense_Mutation p.E181K 0.14 tolerated(0.14) benign(0.009) TCGA-68-A59J-01 11 68682311 68682311 C T IGHMBP2 Silent p.S244S 0.07 TCGA-68-A59J-01 11 70171069 70171069 G A PPFIA1 Silent p.L161L 0.04 TCGA-68-A59J-01 11 840325 840325 G A POLR2L 3'UTR 0.14 TCGA-68-A59J-01 11 9164316 9164327 AATCCATGCTGG - DENND5A In_Frame_Del p.Q1152_F1155del 0.46 TCGA-68-A59J-01 12 101870633 101870633 C A SPIC 5'UTR 0.21 TCGA-68-A59J-01 12 117749387 117749387 C A NOS1 Missense_Mutation p.G246C 0.16 deleterious_low_confidence(0.02) benign(0.336) TCGA-68-A59J-01 12 125834837 125834837 A G TMEM132B Missense_Mutation p.T298A 0.18 tolerated(0.05) benign(0.221) TCGA-68-A59J-01 12 130185121 130185121 C G TMEM132D Missense_Mutation p.D68H 0.15 deleterious(0) probably_damaging(0.992) TCGA-68-A59J-01 12 14946832 14946833 - CAG WBP11 In_Frame_Ins p.D248_V249insA 0.11 TCGA-68-A59J-01 12 21636359 21636359 A T RECQL Silent p.A217A 0.28 TCGA-68-A59J-01 12 4398109 4398109 T G CCND2 Missense_Mutation p.C225G 0.44 tolerated(0.49) benign(0) TCGA-68-A59J-01 12 49434915 49434915 C T KMT2D Missense_Mutation p.G2213D 0.09 probably_damaging(0.919) TCGA-68-A59J-01 12 49443861 49443861 G - KMT2D Frame_Shift_Del p.E1171Nfs*41 0.26 TCGA-68-A59J-01 12 52761179 52761179 C - KRT85 Frame_Shift_Del p.R4Pfs*45 0.28 TCGA-68-A59J-01 12 53708147 53708147 G C AAAS Silent p.V208V 0.05 TCGA-68-A59J-01 12 6128833 6128833 G A VWF Missense_Mutation p.P1251S 0.35 tolerated(0.13) possibly_damaging(0.857) TCGA-68-A59J-01 12 64195961 64195961 G C TMEM5 Missense_Mutation p.K173N 0.22 deleterious(0) probably_damaging(0.997) TCGA-68-A59J-01 12 6788647 6788647 G A ZNF384 Missense_Mutation p.P14S 0.25 tolerated(0.89) probably_damaging(0.995) TCGA-68-A59J-01 12 72338087 72338087 A G TPH2 Missense_Mutation p.N90S 0.43 tolerated(0.11) benign(0.001) TCGA-68-A59J-01 12 78444686 78444686 C A NAV3 Missense_Mutation p.L759M 0.10 tolerated(1) benign(0.01) TCGA-68-A59J-01 12 86199547 86199547 C G RASSF9 Missense_Mutation p.E81Q 0.23 deleterious(0) probably_damaging(1) TCGA-68-A59J-01 12 989093 989093 G T WNK1 Missense_Mutation p.V910F 0.15 deleterious(0.05) probably_damaging(0.961) TCGA-68-A59J-01 13 110850946 110850946 C A COL4A1 Missense_Mutation p.G385C 0.17 unknown(0) TCGA-68-A59J-01 13 110850947 110850947 A T COL4A1 Silent p.P384P 0.17 TCGA-68-A59J-01 13 111138029 111138029 G T COL4A2 Missense_Mutation p.G1018V 0.37 probably_damaging(0.928) TCGA-68-A59J-01 13 111293805 111293805 G T CARS2 3'UTR 0.18 TCGA-68-A59J-01 13 20041486 20041486 T A TPTE2 Splice_Site p.X131_splice 0.30 TCGA-68-A59J-01 13 20233194 20233194 G T MPHOSPH8 Nonsense_Mutation p.E546* 0.08 TCGA-68-A59J-01 13 26788793 26788793 C G RNF6 Missense_Mutation p.G409A 0.21 deleterious(0.01) probably_damaging(0.987) TCGA-68-A59J-01 13 36788637 36788637 C T SOHLH2 Intron 0.25 TCGA-68-A59J-01 13 52605203 52605203 C T UTP14C Nonsense_Mutation p.R755* 0.13 TCGA-68-A59J-01 13 53049290 53049290 C G CKAP2 3'UTR 0.13 TCGA-68-A59J-01 13 95246103 95246103 G C TGDS Missense_Mutation p.L49V 0.42 tolerated(0.13) benign(0.327) TCGA-68-A59J-01 14 102483475 102483475 G C DYNC1H1 Missense_Mutation p.K2633N 0.16 probably_damaging(0.996) TCGA-68-A59J-01 14 105634305 105634305 G T JAG2 Missense_Mutation p.T69K 0.26 deleterious(0) probably_damaging(0.995) TCGA-68-A59J-01 14 106805337 106805337 C A IGHV4-31 Missense_Mutation p.G76W 0.08 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-68-A59J-01 14 19377911 19377911 C A OR11H12 Missense_Mutation p.N106K 0.19 deleterious(0) benign(0.006) TCGA-68-A59J-01 14 20528473 20528473 G T OR4L1 Missense_Mutation p.K90N 0.28 deleterious(0.03) benign(0.244) TCGA-68-A59J-01 14 20665758 20665758 C A OR11G2 Missense_Mutation p.H88Q 0.44 tolerated(0.29) benign(0.045) TCGA-68-A59J-01 14 20927563 20927563 G A TMEM55B Missense_Mutation p.P202S 0.07 deleterious(0) possibly_damaging(0.772) TCGA-68-A59J-01 14 21680019 21680019 G A HNRNPC Missense_Mutation p.S209F 0.07 tolerated(0.14) benign(0.038) TCGA-68-A59J-01 14 22592073 22592073 A G TRAV26-1 Missense_Mutation p.Y53C 0.55 deleterious(0.03) probably_damaging(0.932) TCGA-68-A59J-01 14 24523635 24523635 A T LRRC16B Missense_Mutation p.S93C 0.65 deleterious(0.02) probably_damaging(0.936) TCGA-68-A59J-01 14 24550754 24550754 C G NRL Silent p.A135A 0.08 TCGA-68-A59J-01 14 51348336 51348336 C T ABHD12B Silent p.L160L 0.41 TCGA-68-A59J-01 14 55817396 55817396 C T FBXO34 Silent p.I96I 0.15 TCGA-68-A59J-01 14 70171320 70171320 G C KIAA0247 Splice_Site p.X107_splice 0.26 TCGA-68-A59J-01 14 86089229 86089229 G - FLRT2 Frame_Shift_Del p.G458Afs*4 0.23 TCGA-68-A59J-01 14 88477591 88477591 G C GPR65 Missense_Mutation p.V134L 0.41 deleterious(0) benign(0.351) TCGA-68-A59J-01 14 93708681 93708681 T A BTBD7 Missense_Mutation p.I1113L 0.40 tolerated_low_confidence(0.28) benign(0) TCGA-68-A59J-01 14 93708840 93708840 C T BTBD7 Missense_Mutation p.V1060I 0.26 tolerated_low_confidence(0.94) benign(0) TCGA-68-A59J-01 14 96152771 96152771 G A TCL1B 5'UTR 0.42 TCGA-68-A59J-01 15 102345942 102345942 C A OR4F6 Missense_Mutation p.S7Y 0.40 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-68-A59J-01 15 25335075 25335075 G T SNHG14 Intron 0.31 TCGA-68-A59J-01 15 33261661 33261661 C A FMN1 Silent p.R524R 0.20 TCGA-68-A59J-01 15 35045191 35045191 C A GJD2 Missense_Mutation p.G152W 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-68-A59J-01 15 42105167 42105167 A T MAPKBP1 Silent p.L229L 0.25 TCGA-68-A59J-01 15 42700417 42700417 C T CAPN3 Silent p.I603I 0.16 TCGA-68-A59J-01 15 52060464 52060464 C G TMOD2 Silent p.A44A 0.21 TCGA-68-A59J-01 15 54003677 54003677 A T WDR72 Missense_Mutation p.V238D 0.37 deleterious(0) probably_damaging(0.966) TCGA-68-A59J-01 15 54786910 54786910 G A UNC13C Missense_Mutation p.D1680N 0.07 tolerated_low_confidence(0.18) benign(0.005) TCGA-68-A59J-01 15 55838730 55838730 G A PYGO1 Nonsense_Mutation p.Q251* 0.29 TCGA-68-A59J-01 15 63449739 63449739 C G RPS27L 5'UTR 0.12 TCGA-68-A59J-01 15 74836531 74836531 G T ARID3B Missense_Mutation p.G85V 0.34 deleterious_low_confidence(0.02) benign(0.268) TCGA-68-A59J-01 15 86125117 86125117 G T AKAP13 Missense_Mutation p.G1273V 0.19 tolerated_low_confidence(0.1) benign(0.023) TCGA-68-A59J-01 15 86125118 86125118 G T AKAP13 Silent p.G1273G 0.19 TCGA-68-A59J-01 15 91795094 91795094 G T SV2B Missense_Mutation p.G166V 0.30 deleterious(0) probably_damaging(1) TCGA-68-A59J-01 15 91827399 91827399 G A SV2B Silent p.G552G 0.22 TCGA-68-A59J-01 16 1129557 1129557 C A SSTR5 Missense_Mutation p.A230E 0.26 deleterious(0) possibly_damaging(0.891) TCGA-68-A59J-01 16 14022010 14022010 T C ERCC4 Missense_Mutation p.L237P 0.18 deleterious(0) probably_damaging(0.968) TCGA-68-A59J-01 16 15977951 15977951 G C FOPNL Missense_Mutation p.S47C 0.10 deleterious(0.02) possibly_damaging(0.83) TCGA-68-A59J-01 16 16263563 16263563 C A ABCC6 Missense_Mutation p.G979W 0.15 deleterious(0) probably_damaging(0.994) TCGA-68-A59J-01 16 20559469 20559469 C T ACSM2B Missense_Mutation p.G338E 0.13 deleterious(0) probably_damaging(0.999) TCGA-68-A59J-01 16 2079682 2079682 G A SLC9A3R2 Missense_Mutation p.E105K 0.30 tolerated(0.21) possibly_damaging(0.604) TCGA-68-A59J-01 16 2150492 2150492 C T PKD1 Missense_Mutation p.R3158K 0.37 benign(0.061) TCGA-68-A59J-01 16 22271802 22271802 C T EEF2K Silent p.D417D 0.16 TCGA-68-A59J-01 16 2485848 2485848 G T CCNF Missense_Mutation p.G107V 0.26 deleterious(0) probably_damaging(0.963) TCGA-68-A59J-01 16 27818859 27818859 C A GSG1L Missense_Mutation p.G283W 0.20 deleterious_low_confidence(0.01) benign(0.337) TCGA-68-A59J-01 16 29376219 29376219 C T SNX29P2 RNA 0.23 TCGA-68-A59J-01 16 30034987 30034987 C A C16orf92 Missense_Mutation p.P24T 0.19 deleterious_low_confidence(0.02) probably_damaging(0.958) TCGA-68-A59J-01 16 3293333 3293333 C T MEFV Silent p.V718V 0.17 TCGA-68-A59J-01 16 3349312 3349312 C G TIGD7 Missense_Mutation p.D435H 0.20 tolerated(0.16) benign(0) TCGA-68-A59J-01 16 347064 347064 G A AXIN1 Silent p.T649T 0.40 TCGA-68-A59J-01 16 3724388 3724388 C T TRAP1 Silent p.K332K 0.10 TCGA-68-A59J-01 16 58074460 58074460 G - MMP15 Frame_Shift_Del p.A257Qfs*63 0.14 TCGA-68-A59J-01 16 58149990 58149990 G T C16orf80 Silent p.V77V 0.24 TCGA-68-A59J-01 16 58714049 58714049 C G SLC38A7 5'UTR 0.20 TCGA-68-A59J-01 16 67323535 67323535 G A KCTD19 Silent p.I906I 0.17 TCGA-68-A59J-01 16 67644990 67644990 A T CTCF Missense_Mutation p.E85D 0.15 tolerated_low_confidence(0.23) benign(0.096) TCGA-68-A59J-01 16 68961665 68961665 G T TANGO6 Silent p.G774G 0.18 TCGA-68-A59J-01 16 68961666 68961666 A T TANGO6 Nonsense_Mutation p.K775* 0.18 TCGA-68-A59J-01 16 69369092 69369092 G A COG8 Nonsense_Mutation p.Q249* 0.32 TCGA-68-A59J-01 16 69874163 69874163 G T WWP2 Missense_Mutation p.D159Y 0.22 deleterious(0.01) benign(0.347) TCGA-68-A59J-01 16 70605669 70605669 G A SF3B3 Missense_Mutation p.E1203K 0.24 deleterious(0) possibly_damaging(0.625) TCGA-68-A59J-01 16 73126784 73126784 T C HCCAT5 RNA 0.13 TCGA-68-A59J-01 16 7726823 7726823 C T RBFOX1 Silent p.A347A 0.11 TCGA-68-A59J-01 16 89249996 89249996 A T CDH15 Missense_Mutation p.E133V 0.13 deleterious(0) probably_damaging(0.999) TCGA-68-A59J-01 16 89614460 89614460 G T SPG7 Silent p.R534R 0.17 TCGA-68-A59J-01 17 10354183 10354183 C T MYH4 Missense_Mutation p.D1299N 0.50 deleterious(0.05) benign(0.005) TCGA-68-A59J-01 17 10440726 10440726 C - MYH2 Frame_Shift_Del p.G574Afs*9 0.09 TCGA-68-A59J-01 17 10440803 10440803 G A MYH2 Silent p.D548D 0.47 TCGA-68-A59J-01 17 12656391 12656391 T A MYOCD Missense_Mutation p.C596S 0.11 tolerated(0.79) benign(0) TCGA-68-A59J-01 17 16705817 16705817 G C CCDC144A 3'UTR 0.79 TCGA-68-A59J-01 17 27038615 27038615 G C PROCA1 Missense_Mutation p.R22G 0.12 tolerated(0.46) benign(0) TCGA-68-A59J-01 17 30320889 30320889 C G SUZ12 Silent p.L433L 0.08 TCGA-68-A59J-01 17 33738777 33738777 T A SLFN12 Missense_Mutation p.K439N 0.33 tolerated(0.61) benign(0.008) TCGA-68-A59J-01 17 3379419 3379419 G C ASPA 5'UTR 0.33 TCGA-68-A59J-01 17 43482424 43482424 C T ARHGAP27 Missense_Mutation p.E31K 0.18 tolerated(0.05) probably_damaging(0.988) TCGA-68-A59J-01 17 47489163 47489163 G A PHB Missense_Mutation p.R43C 0.14 tolerated(0.16) benign(0.024) TCGA-68-A59J-01 17 48596059 48596059 G A MYCBPAP Missense_Mutation p.R252Q 0.06 deleterious(0.01) probably_damaging(0.963) TCGA-68-A59J-01 17 48735484 48735484 C T ABCC3 Silent p.I176I 0.14 TCGA-68-A59J-01 17 54450140 54450140 G T ANKFN1 Silent p.L248L 0.16 TCGA-68-A59J-01 17 56350174 56350174 A G MPO Missense_Mutation p.V576A 0.34 tolerated(0.05) possibly_damaging(0.827) TCGA-68-A59J-01 17 60061540 60061540 G A MED13 Silent p.I960I 0.45 TCGA-68-A59J-01 17 61781837 61781837 C A STRADA Missense_Mutation p.G322C 0.14 deleterious(0) benign(0.108) TCGA-68-A59J-01 17 62265544 62265544 G T TEX2 Missense_Mutation p.P810H 0.25 deleterious(0) probably_damaging(0.996) TCGA-68-A59J-01 17 74011133 74011134 GC - EVPL Frame_Shift_Del p.L696Efs*65 0.16 TCGA-68-A59J-01 17 74078056 74078056 C A ZACN Missense_Mutation p.A325D 0.39 tolerated(0.1) possibly_damaging(0.598) TCGA-68-A59J-01 17 7578415 7578415 A T TP53 Missense_Mutation p.V172D 0.54 deleterious(0) probably_damaging(0.994) TCGA-68-A59J-01 17 8132764 8132764 G A CTC1 Silent p.S1004S 0.45 TCGA-68-A59J-01 17 8216853 8216853 T A ARHGEF15 Silent p.P323P 0.44 TCGA-68-A59J-01 17 973288 973288 C T ABR Missense_Mutation p.E313K 0.12 deleterious(0) probably_damaging(0.995) TCGA-68-A59J-01 18 12356792 12356792 C T AFG3L2 Silent p.T355T 0.27 TCGA-68-A59J-01 18 6974936 6974936 C T LAMA1 Missense_Mutation p.D2197N 0.35 tolerated(0.44) benign(0.044) TCGA-68-A59J-01 18 70532833 70532833 C A NETO1 Intron 0.31 TCGA-68-A59J-01 19 10746147 10746147 G C SLC44A2 Missense_Mutation p.D397H 0.14 deleterious(0.05) benign(0.409) TCGA-68-A59J-01 19 1091848 1091848 C A POLR2E Missense_Mutation p.E97D 0.42 tolerated(0.11) benign(0.039) TCGA-68-A59J-01 19 11546858 11546858 G T PRKCSH Intron 0.15 TCGA-68-A59J-01 19 14706107 14706107 C A CLEC17A Missense_Mutation p.P142Q 0.14 tolerated(0.06) possibly_damaging(0.694) TCGA-68-A59J-01 19 17270219 17270219 C G MYO9B Missense_Mutation p.I448M 0.35 tolerated(1) benign(0.411) TCGA-68-A59J-01 19 19627102 19627102 A G NDUFA13 Missense_Mutation p.I19V 0.44 tolerated(0.49) benign(0.075) TCGA-68-A59J-01 19 19655192 19655192 G A CILP2 Missense_Mutation p.R613Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-68-A59J-01 19 22154325 22154325 A G ZNF208 Missense_Mutation p.C1171R 0.41 deleterious(0) probably_damaging(0.998) TCGA-68-A59J-01 19 22156544 22156544 C A ZNF208 Missense_Mutation p.G431V 0.16 deleterious(0) probably_damaging(0.991) TCGA-68-A59J-01 19 22375896 22375896 G T ZNF676 Missense_Mutation p.P18T 0.24 deleterious(0.03) benign(0.269) TCGA-68-A59J-01 19 3612058 3612058 G A CACTIN Missense_Mutation p.P714S 0.36 deleterious(0.01) probably_damaging(0.982) TCGA-68-A59J-01 19 38692552 38692552 G A SIPA1L3 Missense_Mutation p.D1679N 0.23 tolerated(0.26) benign(0.007) TCGA-68-A59J-01 19 39787231 39787231 T C IFNL1 Missense_Mutation p.L57S 0.19 deleterious(0.03) probably_damaging(0.993) TCGA-68-A59J-01 19 40363046 40363046 C T FCGBP Silent p.V5008V 0.21 TCGA-68-A59J-01 19 40729529 40729529 C A CNTD2 Intron 0.22 TCGA-68-A59J-01 19 44101331 44101331 C T ZNF576 Missense_Mutation p.P24L 0.22 deleterious_low_confidence(0.03) benign(0.115) TCGA-68-A59J-01 19 45912255 45912255 G A CD3EAP Silent p.G343G 0.07 TCGA-68-A59J-01 19 46268875 46268875 C G SIX5 Missense_Mutation p.E702Q 0.33 tolerated(0.22) benign(0.007) TCGA-68-A59J-01 19 48989023 48989023 C T LMTK3 3'UTR 0.16 TCGA-68-A59J-01 19 50918710 50918710 G T POLD1 Silent p.A860A 0.36 TCGA-68-A59J-01 19 51325021 51325021 C A KLK1 Silent p.G51G 0.31 TCGA-68-A59J-01 19 51462444 51462444 G C KLK6 Missense_Mutation p.I237M 0.12 deleterious(0) probably_damaging(0.994) TCGA-68-A59J-01 19 52633801 52633801 G A ZNF616 5'UTR 0.32 TCGA-68-A59J-01 19 52719307 52719308 CA T PPP2R1A Frame_Shift_Del p.Q325* 0.23 TCGA-68-A59J-01 19 52941091 52941091 A T ZNF534 Silent p.V139V 0.26 TCGA-68-A59J-01 19 53269640 53269640 G A ZNF600 Missense_Mutation p.L457F 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-68-A59J-01 19 54656060 54656060 G A CNOT3 Missense_Mutation p.R568Q 0.33 tolerated(0.12) benign(0.238) TCGA-68-A59J-01 19 55450833 55450833 C G NLRP7 Missense_Mutation p.D452H 0.22 tolerated(0.42) benign(0.001) TCGA-68-A59J-01 19 56539479 56539479 A T NLRP5 Missense_Mutation p.H627L 0.30 deleterious(0) benign(0.093) TCGA-68-A59J-01 19 57286100 57286100 G A ZIM2 Nonsense_Mutation p.Q514* 0.38 TCGA-68-A59J-01 19 57889384 57889384 C G ZNF547 Missense_Mutation p.T347S 0.08 tolerated(0.08) possibly_damaging(0.727) TCGA-68-A59J-01 19 58371199 58371199 T C ZNF587 Silent p.F473F 0.17 TCGA-68-A59J-01 19 7619154 7619154 G C PNPLA6 Missense_Mutation p.D831H 0.18 deleterious(0) possibly_damaging(0.846) TCGA-68-A59J-01 19 9061736 9061736 C T MUC16 Missense_Mutation p.M8570I 0.24 unknown(0) TCGA-68-A59J-01 19 9065454 9065454 C T MUC16 Missense_Mutation p.S7331N 0.10 unknown(0) TCGA-68-A59J-01 1 103343554 103343554 G C COL11A1 3'UTR 0.24 TCGA-68-A59J-01 1 104114273 104114273 T A AMY2B Missense_Mutation p.Y17N 0.11 tolerated(0.09) possibly_damaging(0.477) TCGA-68-A59J-01 1 108724579 108724579 C T SLC25A24 Missense_Mutation p.E128K 0.08 tolerated(0.61) benign(0.002) TCGA-68-A59J-01 1 111824286 111824286 G T CHIAP2 RNA 0.16 TCGA-68-A59J-01 1 116534684 116534684 A G SLC22A15 Silent p.A40A 0.29 TCGA-68-A59J-01 1 144864250 144864250 C G PDE4DIP Missense_Mutation p.E1949Q 0.37 tolerated(0.06) benign(0.111) TCGA-68-A59J-01 1 152281513 152281513 G C FLG Nonsense_Mutation p.S1950* 0.05 TCGA-68-A59J-01 1 155294922 155294922 G A RUSC1 Missense_Mutation p.D496N 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-68-A59J-01 1 157514298 157514298 G T FCRL5 Missense_Mutation p.Q200K 0.50 tolerated(0.23) benign(0.223) TCGA-68-A59J-01 1 157773829 157773829 A C FCRL1 Missense_Mutation p.F42C 0.10 deleterious(0.05) benign(0.094) TCGA-68-A59J-01 1 158368496 158368496 C G OR10T2 Missense_Mutation p.C254S 0.09 deleterious(0.05) probably_damaging(0.999) TCGA-68-A59J-01 1 158607968 158607968 C G SPTA1 Missense_Mutation p.D1682H 0.10 deleterious(0.02) probably_damaging(0.941) TCGA-68-A59J-01 1 158670058 158670058 G A OR6K2 Missense_Mutation p.L129F 0.14 deleterious(0) probably_damaging(1) TCGA-68-A59J-01 1 15956939 15956939 C T DDI2 Nonsense_Mutation p.Q130* 0.44 TCGA-68-A59J-01 1 161165423 161165423 G A ADAMTS4 Missense_Mutation p.H365Y 0.10 deleterious(0) probably_damaging(0.997) TCGA-68-A59J-01 1 161976090 161976090 T A OLFML2B Silent p.P240P 0.46 TCGA-68-A59J-01 1 171751027 171751027 T G METTL13 5'UTR 0.11 TCGA-68-A59J-01 1 179081495 179081495 C T ABL2 Missense_Mutation p.E534K 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-68-A59J-01 1 179521781 179521781 G A NPHS2 Missense_Mutation p.S277L 0.18 deleterious(0) probably_damaging(1) TCGA-68-A59J-01 1 190129950 190129950 C A BRINP3 Missense_Mutation p.L344F 0.11 tolerated(0.87) benign(0.004) TCGA-68-A59J-01 1 197024861 197024861 G T F13B Silent p.S446S 0.16 TCGA-68-A59J-01 1 197112675 197112675 C A ASPM Missense_Mutation p.C236F 0.55 tolerated(0.06) benign(0.235) TCGA-68-A59J-01 1 201195085 201195085 G A IGFN1 Silent p.A3540A 0.52 TCGA-68-A59J-01 1 206945751 206945751 C G IL10 Silent p.L10L 0.52 TCGA-68-A59J-01 1 209786142 209786142 G A CAMK1G Silent p.S451S 0.24 TCGA-68-A59J-01 1 215933087 215933087 G T USH2A Missense_Mutation p.Q3716K 0.09 benign(0.007) TCGA-68-A59J-01 1 216680386 216680386 C T ESRRG Silent p.L436L 0.10 TCGA-68-A59J-01 1 218458675 218458675 C T RRP15 Missense_Mutation p.P6L 0.57 tolerated_low_confidence(0.3) benign(0.01) TCGA-68-A59J-01 1 21929328 21929328 T A RAP1GAP Missense_Mutation p.I567F 0.43 tolerated(0.06) probably_damaging(0.988) TCGA-68-A59J-01 1 226924836 226924836 C A ITPKB Silent p.G108G 0.38 TCGA-68-A59J-01 1 233270932 233270932 C T PCNXL2 Missense_Mutation p.D1222N 0.27 tolerated(0.41) benign(0.004) TCGA-68-A59J-01 1 237947415 237947415 C A RYR2 Missense_Mutation p.R4135S 0.43 probably_damaging(0.988) TCGA-68-A59J-01 1 241099989 241099989 C T RGS7 Missense_Mutation p.G82R 0.18 deleterious(0) probably_damaging(0.999) TCGA-68-A59J-01 1 245582954 245582954 A T KIF26B Missense_Mutation p.K358M 0.08 deleterious(0.05) unknown(0) TCGA-68-A59J-01 1 245849423 245849423 C A KIF26B Missense_Mutation p.S1046R 0.65 deleterious(0.04) unknown(0) TCGA-68-A59J-01 1 247201099 247201099 C A ZNF670 Silent p.T274T 0.07 TCGA-68-A59J-01 1 247492656 247492656 C A ZNF496 Missense_Mutation p.R75S 0.43 deleterious(0) possibly_damaging(0.622) TCGA-68-A59J-01 1 247492657 247492657 C A ZNF496 Missense_Mutation p.R75M 0.43 deleterious(0) probably_damaging(0.968) TCGA-68-A59J-01 1 248031293 248031293 G T TRIM58 Nonsense_Mutation p.E267* 0.55 TCGA-68-A59J-01 1 248059391 248059391 G A OR2W3 Missense_Mutation p.R168H 0.58 tolerated(0.56) benign(0.12) TCGA-68-A59J-01 1 248403157 248403157 G C OR2M4 Missense_Mutation p.K309N 0.55 deleterious(0.03) possibly_damaging(0.461) TCGA-68-A59J-01 1 38338742 38338742 G T INPP5B Missense_Mutation p.L683M 0.28 deleterious(0) probably_damaging(0.999) TCGA-68-A59J-01 1 46738166 46738166 C T RAD54L Missense_Mutation p.L400F 0.53 deleterious(0) possibly_damaging(0.852) TCGA-68-A59J-01 1 55457711 55457711 G T TMEM61 Nonsense_Mutation p.E190* 0.37 TCGA-68-A59J-01 1 57372405 57372405 A T C8A Missense_Mutation p.I388L 0.48 tolerated(1) benign(0.004) TCGA-68-A59J-01 1 5923345 5923345 C A NPHP4 Missense_Mutation p.V1421L 0.43 deleterious(0) possibly_damaging(0.907) TCGA-68-A59J-01 1 67390580 67390580 G T MIER1 5'Flank 0.17 TCGA-68-A59J-01 1 74716453 74716453 G C FPGT-TNNI3K Missense_Mutation p.K225N 0.29 tolerated(0.12) probably_damaging(0.917) TCGA-68-A59J-01 1 8585832 8585832 T A RERE Intron 0.36 TCGA-68-A59J-01 1 93583981 93583981 A G MTF2 Missense_Mutation p.M238V 0.32 tolerated(0.07) possibly_damaging(0.772) TCGA-68-A59J-01 1 978707 978707 G A AGRN Silent p.L491L 0.47 TCGA-68-A59J-01 20 16360282 16360282 C T KIF16B Missense_Mutation p.E789K 0.08 deleterious(0.03) possibly_damaging(0.615) TCGA-68-A59J-01 20 30753401 30753401 G T TM9SF4 3'UTR 0.40 TCGA-68-A59J-01 20 31620846 31620846 G C BPIFB6 Missense_Mutation p.G52R 0.29 deleterious(0.01) benign(0.2) TCGA-68-A59J-01 20 37356609 37356609 A T SLC32A1 Missense_Mutation p.D302V 0.22 deleterious(0) possibly_damaging(0.837) TCGA-68-A59J-01 20 54575820 54575820 G T CBLN4 Missense_Mutation p.H125Q 0.31 deleterious(0) probably_damaging(0.969) TCGA-68-A59J-01 20 55027586 55027586 G C CASS4 Missense_Mutation p.V452L 0.24 tolerated(0.08) benign(0.012) TCGA-68-A59J-01 21 10998254 10998254 T C TPTE RNA 0.12 TCGA-68-A59J-01 21 34652137 34652137 A G IL10RB Missense_Mutation p.N138D 0.17 tolerated(0.21) benign(0.007) TCGA-68-A59J-01 21 41423979 41423979 C T DSCAM Silent p.Q1697Q 0.19 TCGA-68-A59J-01 21 45978291 45978291 A G KRTAP10-3 Missense_Mutation p.V103A 0.37 tolerated(0.08) unknown(0) TCGA-68-A59J-01 21 47976923 47976923 G A DIP2A Silent p.Q1190Q 0.36 TCGA-68-A59J-01 22 17444670 17444670 G A GAB4 Missense_Mutation p.P509L 0.14 tolerated(0.4) benign(0) TCGA-68-A59J-01 22 20127356 20127356 C T ZDHHC8 Silent p.F166F 0.37 TCGA-68-A59J-01 22 26689051 26689051 C A SEZ6L Missense_Mutation p.S258R 0.14 tolerated(0.08) possibly_damaging(0.461) TCGA-68-A59J-01 22 29695747 29695747 G - EWSR1 Frame_Shift_Del p.G618Efs*13 0.18 TCGA-68-A59J-01 22 29704515 29704515 G - GAS2L1 Frame_Shift_Del p.L141Wfs*60 0.21 TCGA-68-A59J-01 22 37326843 37326843 C T CSF2RB Missense_Mutation p.A328V 0.24 deleterious(0.04) benign(0.014) TCGA-68-A59J-01 22 38369655 38369655 G T SOX10 Silent p.G416G 0.26 TCGA-68-A59J-01 22 40015405 40015405 C T CACNA1I Silent p.R191R 0.29 TCGA-68-A59J-01 22 42608331 42608331 C G TCF20 Missense_Mutation p.R994T 0.30 probably_damaging(0.954) TCGA-68-A59J-01 22 45574431 45574431 A T NUP50 Missense_Mutation p.E218V 0.10 tolerated(0.25) benign(0.197) TCGA-68-A59J-01 22 45580498 45580498 G A NUP50 Missense_Mutation p.E457K 0.13 deleterious(0) probably_damaging(0.99) TCGA-68-A59J-01 22 50468858 50468858 C T TTLL8 Splice_Site p.X751_splice 0.13 TCGA-68-A59J-01 22 50943011 50943011 C A LMF2 Missense_Mutation p.R528L 0.46 deleterious(0) probably_damaging(0.95) TCGA-68-A59J-01 22 51063595 51063595 T C ARSA Missense_Mutation p.H503R 0.41 tolerated(0.5) benign(0) TCGA-68-A59J-01 2 125627289 125627289 C A CNTNAP5 Missense_Mutation p.P1128Q 0.20 deleterious(0.01) possibly_damaging(0.613) TCGA-68-A59J-01 2 131803499 131803499 C A ARHGEF4 Intron 0.30 TCGA-68-A59J-01 2 132905786 132905786 C G ANKRD30BL 3'UTR 0.36 TCGA-68-A59J-01 2 135099166 135099166 C G MGAT5 Silent p.L271L 0.11 TCGA-68-A59J-01 2 136540398 136540398 C G UBXN4 Missense_Mutation p.Q490E 0.20 tolerated(0.14) benign(0.009) TCGA-68-A59J-01 2 138163335 138163335 A T THSD7B Missense_Mutation p.T885S 0.33 tolerated(0.43) possibly_damaging(0.486) TCGA-68-A59J-01 2 138169407 138169407 G C THSD7B Missense_Mutation p.G975A 0.11 deleterious(0) possibly_damaging(0.899) TCGA-68-A59J-01 2 152490301 152490301 C G NEB Missense_Mutation p.G3094A 0.27 benign(0.368) TCGA-68-A59J-01 2 158165188 158165188 A T GALNT5 Missense_Mutation p.N877I 0.30 deleterious(0.04) benign(0.301) TCGA-68-A59J-01 2 167138238 167138238 G C SCN9A Silent p.L674L 0.10 TCGA-68-A59J-01 2 168107334 168107334 C A XIRP2 Silent p.S3144S 0.28 TCGA-68-A59J-01 2 171572974 171572974 C G SP5 Missense_Mutation p.P86R 0.44 tolerated(0.2) benign(0.379) TCGA-68-A59J-01 2 178098953 178098953 C G NFE2L2 Missense_Mutation p.G31A 0.32 deleterious(0.02) benign(0.318) TCGA-68-A59J-01 2 179453472 179453472 A G TTN Missense_Mutation p.S20994P 0.27 TCGA-68-A59J-01 2 179605407 179605407 A G TTN Missense_Mutation p.F4185L 0.10 TCGA-68-A59J-01 2 179613015 179613015 G C TTN Intron 0.26 TCGA-68-A59J-01 2 197504417 197504417 G A CCDC150 5'UTR 0.40 TCGA-68-A59J-01 2 200137288 200137288 C T SATB2 Silent p.R616R 0.35 TCGA-68-A59J-01 2 20460208 20460208 C G PUM2 Missense_Mutation p.E749Q 0.18 deleterious(0) possibly_damaging(0.874) TCGA-68-A59J-01 2 207988705 207988705 C A KLF7 Missense_Mutation p.V176L 0.41 tolerated(0.31) benign(0.022) TCGA-68-A59J-01 2 210558322 210558322 C T MAP2 Silent p.S476S 0.19 TCGA-68-A59J-01 2 21235358 21235358 C A APOB Missense_Mutation p.W1461L 0.22 benign(0.007) TCGA-68-A59J-01 2 216964737 216964737 C T TMEM169 Silent p.V122V 0.21 TCGA-68-A59J-01 2 226447083 226447083 G T NYAP2 Missense_Mutation p.G317V 0.34 deleterious(0) probably_damaging(0.976) TCGA-68-A59J-01 2 228881607 228881607 G A SPHKAP Silent p.N1321N 0.53 TCGA-68-A59J-01 2 234344479 234344479 C A DGKD Missense_Mutation p.A201D 0.12 deleterious(0) probably_damaging(0.999) TCGA-68-A59J-01 2 238253397 238253397 G T COL6A3 Silent p.R2422R 0.44 TCGA-68-A59J-01 2 238283203 238283203 G A COL6A3 Silent p.T1177T 0.40 TCGA-68-A59J-01 2 27455051 27455051 T A CAD Nonsense_Mutation p.C868* 0.18 TCGA-68-A59J-01 2 27800579 27800579 C A C2orf16 Silent p.P380P 0.10 TCGA-68-A59J-01 2 47206047 47206047 G C TTC7A Splice_Site p.X255_splice 0.24 TCGA-68-A59J-01 2 64160911 64160911 C A VPS54 Missense_Mutation p.E545D 0.30 tolerated(0.48) benign(0.001) TCGA-68-A59J-01 2 72945241 72945241 G A EXOC6B Silent p.A220A 0.31 TCGA-68-A59J-01 3 112066668 112066668 G T CD200 Missense_Mutation p.V254F 0.18 tolerated(0.05) benign(0.005) TCGA-68-A59J-01 3 112358233 112358233 C A CCDC80 Missense_Mutation p.D174Y 0.23 deleterious(0) probably_damaging(0.993) TCGA-68-A59J-01 3 115529234 115529234 C A LSAMP Missense_Mutation p.G316V 0.19 deleterious(0) probably_damaging(0.916) TCGA-68-A59J-01 3 121303878 121303878 C A ARGFX Missense_Mutation p.A112D 0.33 tolerated(0.06) benign(0.401) TCGA-68-A59J-01 3 129233247 129233247 C T IFT122 Silent p.T1052T 0.17 TCGA-68-A59J-01 3 129695958 129695958 C T TRH Silent p.L210L 0.31 TCGA-68-A59J-01 3 142539880 142539880 G T PCOLCE2 Silent p.A319A 0.38 TCGA-68-A59J-01 3 164737545 164737545 G A SI Silent p.L1090L 0.18 TCGA-68-A59J-01 3 180327800 180327800 G A TTC14 Missense_Mutation p.E595K 0.07 deleterious(0) unknown(0) TCGA-68-A59J-01 3 182583467 182583467 C G ATP11B Missense_Mutation p.P475R 0.11 tolerated(0.48) benign(0.008) TCGA-68-A59J-01 3 183368286 183368286 C T KLHL24 Missense_Mutation p.H48Y 0.18 deleterious(0.02) possibly_damaging(0.614) TCGA-68-A59J-01 3 183705571 183705571 C G ABCC5 Missense_Mutation p.G193A 0.17 tolerated(1) benign(0.062) TCGA-68-A59J-01 3 185542689 185542689 C - IGF2BP2 Frame_Shift_Del p.Q21Sfs*16 0.29 TCGA-68-A59J-01 3 24018727 24018727 A G NR1D2 Missense_Mutation p.I519M 0.47 tolerated(0.11) possibly_damaging(0.881) TCGA-68-A59J-01 3 48491469 48491469 G C ATRIP Missense_Mutation p.D92H 0.18 deleterious(0.02) probably_damaging(0.997) TCGA-68-A59J-01 3 58196600 58196600 G C DNASE1L3 Missense_Mutation p.L12V 0.22 tolerated(0.2) benign(0.364) TCGA-68-A59J-01 3 65433734 65433734 T C MAGI1 Splice_Site p.X348_splice 0.52 TCGA-68-A59J-01 3 73432894 73432894 G T PDZRN3 Silent p.R941R 0.46 TCGA-68-A59J-01 3 77530334 77530334 G C ROBO2 Missense_Mutation p.E227Q 0.18 deleterious(0.01) possibly_damaging(0.584) TCGA-68-A59J-01 3 97596351 97596351 C G CRYBG3 Missense_Mutation p.P157A 0.35 deleterious(0) probably_damaging(0.999) TCGA-68-A59J-01 4 104079982 104079982 T A CENPE Missense_Mutation p.E888V 0.23 possibly_damaging(0.489) TCGA-68-A59J-01 4 108535461 108535461 C G PAPSS1 Missense_Mutation p.A607P 0.22 deleterious(0.01) probably_damaging(0.996) TCGA-68-A59J-01 4 114264237 114264237 G A ANK2 Missense_Mutation p.G1396D 0.13 probably_damaging(1) TCGA-68-A59J-01 4 141600777 141600777 C A TBC1D9 Missense_Mutation p.G194V 0.46 deleterious(0) probably_damaging(1) TCGA-68-A59J-01 4 145633212 145633212 G T HHIP Missense_Mutation p.G471V 0.40 deleterious(0) probably_damaging(0.999) TCGA-68-A59J-01 4 39219667 39219668 - T WDR19 Frame_Shift_Ins p.K475* 0.33 TCGA-68-A59J-01 4 39409203 39409203 G A KLB Missense_Mutation p.D212N 0.16 tolerated(0.15) benign(0.009) TCGA-68-A59J-01 4 46060534 46060534 C T GABRG1 Missense_Mutation p.R244Q 0.13 tolerated(0.1) possibly_damaging(0.599) TCGA-68-A59J-01 4 57798233 57798233 G A REST Missense_Mutation p.R1070K 0.18 tolerated(0.25) probably_damaging(0.935) TCGA-68-A59J-01 4 65275168 65275168 T A TECRL 5'UTR 0.33 TCGA-68-A59J-01 4 66356269 66356269 C A EPHA5 Missense_Mutation p.G410C 0.16 deleterious(0.01) possibly_damaging(0.696) TCGA-68-A59J-01 4 76529114 76529114 G - CDKL2 Frame_Shift_Del p.L228Ffs*11 0.19 TCGA-68-A59J-01 4 88723824 88723824 C T IBSP Nonsense_Mutation p.R42* 0.45 TCGA-68-A59J-01 5 123983197 123983197 T C ZNF608 Silent p.S960S 0.13 TCGA-68-A59J-01 5 127641516 127641516 T A FBN2 Missense_Mutation p.E1849D 0.57 deleterious(0.01) possibly_damaging(0.467) TCGA-68-A59J-01 5 139885401 139885401 G C ANKHD1 Missense_Mutation p.E1119Q 0.56 possibly_damaging(0.728) TCGA-68-A59J-01 5 140222982 140222982 G T PCDHA8 Silent p.A692A 0.44 TCGA-68-A59J-01 5 140741924 140741924 C A PCDHGB2 Missense_Mutation p.P741H 0.51 deleterious(0.02) benign(0.046) TCGA-68-A59J-01 5 140764566 140764566 C A PCDHGA7 Silent p.V700V 0.27 TCGA-68-A59J-01 5 140870394 140870394 G T PCDHGC5 Missense_Mutation p.M529I 0.46 tolerated(0.13) benign(0.003) TCGA-68-A59J-01 5 14477072 14477072 C T TRIO Silent p.H2051H 0.21 TCGA-68-A59J-01 5 1466918 1466918 C A LPCAT1 Missense_Mutation p.V456L 0.33 tolerated(0.12) benign(0.182) TCGA-68-A59J-01 5 149629865 149629865 G T CAMK2A Missense_Mutation p.S275Y 0.53 deleterious_low_confidence(0) possibly_damaging(0.751) TCGA-68-A59J-01 5 153190642 153190642 C A GRIA1 Missense_Mutation p.P870T 0.52 tolerated_low_confidence(0.87) benign(0.005) TCGA-68-A59J-01 5 170216250 170216250 T A GABRP Silent p.G57G 0.17 TCGA-68-A59J-01 5 176396635 176396635 G C UIMC1 Missense_Mutation p.Q144E 0.15 tolerated(0.29) possibly_damaging(0.547) TCGA-68-A59J-01 5 178580585 178580585 G T ADAMTS2 Missense_Mutation p.D474E 0.67 tolerated(0.13) benign(0.011) TCGA-68-A59J-01 5 24537632 24537632 C G CDH10 Missense_Mutation p.R128P 0.27 deleterious(0.01) probably_damaging(0.993) TCGA-68-A59J-01 5 33649714 33649714 G T ADAMTS12 Missense_Mutation p.P427T 0.37 tolerated(0.6) benign(0.35) TCGA-68-A59J-01 5 35861052 35861052 G T IL7R Missense_Mutation p.D61Y 0.40 deleterious(0) probably_damaging(0.994) TCGA-68-A59J-01 5 36976075 36976075 A G NIPBL Missense_Mutation p.T356A 0.31 tolerated_low_confidence(0.18) benign(0.027) TCGA-68-A59J-01 5 38451463 38451463 G T EGFLAM Missense_Mutation p.A872S 0.33 tolerated(0.48) benign(0.077) TCGA-68-A59J-01 5 38481669 38481669 G T LIFR 3'UTR 0.08 TCGA-68-A59J-01 5 39311350 39311350 C G C9 Missense_Mutation p.E334Q 0.36 tolerated(0.08) probably_damaging(0.999) TCGA-68-A59J-01 5 41065593 41065593 C G MROH2B Splice_Site p.X68_splice 0.47 TCGA-68-A59J-01 5 41203315 41203315 G A C6 Silent p.V6V 0.28 TCGA-68-A59J-01 5 61659621 61659627 TCTCATT - KIF2A Frame_Shift_Del p.L455Ifs*30 0.61 TCGA-68-A59J-01 5 74028907 74028907 C G GFM2 Missense_Mutation p.L509F 0.39 deleterious(0) probably_damaging(0.989) TCGA-68-A59J-01 5 79854742 79854742 G C ANKRD34B Missense_Mutation p.A366G 0.47 tolerated(0.13) possibly_damaging(0.836) TCGA-68-A59J-01 5 87516462 87516462 C A TMEM161B Nonsense_Mutation p.E122* 0.62 TCGA-68-A59J-01 5 89990188 89990188 C A GPR98 Missense_Mutation p.L2539I 0.45 possibly_damaging(0.899) TCGA-68-A59J-01 6 102266248 102266248 G T GRIK2 Nonsense_Mutation p.G403* 0.17 TCGA-68-A59J-01 6 111409151 111409151 G - SLC16A10 Frame_Shift_Del p.E66Rfs*8 0.32 TCGA-68-A59J-01 6 111697171 111697171 T C REV3L Missense_Mutation p.Y796C 0.42 deleterious(0) probably_damaging(0.999) TCGA-68-A59J-01 6 128134598 128134598 C A THEMIS Silent p.T396T 0.21 TCGA-68-A59J-01 6 132874581 132874581 G A TAAR8 Silent p.K250K 0.12 TCGA-68-A59J-01 6 135516964 135516964 G A MYB Missense_Mutation p.A343T 0.21 tolerated(0.74) probably_damaging(0.979) TCGA-68-A59J-01 6 138413220 138413220 G A PERP Silent p.L181L 0.33 TCGA-68-A59J-01 6 144854224 144854224 C A UTRN Missense_Mutation p.L2021I 0.38 tolerated(0.09) probably_damaging(0.999) TCGA-68-A59J-01 6 146276053 146276053 T C SHPRH Missense_Mutation p.R136G 0.08 deleterious_low_confidence(0.02) benign(0.005) TCGA-68-A59J-01 6 150067584 150067584 G C NUP43 Silent p.T16T 0.06 TCGA-68-A59J-01 6 152668352 152668352 C A SYNE1 Missense_Mutation p.A3974S 0.21 benign(0.342) TCGA-68-A59J-01 6 160679583 160679583 C T SLC22A2 Silent p.E69E 0.14 TCGA-68-A59J-01 6 165712970 165712970 C A C6orf118 Missense_Mutation p.A300S 0.14 tolerated(0.05) possibly_damaging(0.814) TCGA-68-A59J-01 6 165712971 165712971 C A C6orf118 Missense_Mutation p.M299I 0.14 tolerated(0.08) benign(0.153) TCGA-68-A59J-01 6 167721278 167721278 C A UNC93A Missense_Mutation p.H330N 0.15 tolerated(0.64) benign(0.001) TCGA-68-A59J-01 6 27860953 27860953 A C HIST1H2AM 5'UTR 0.40 TCGA-68-A59J-01 6 29012329 29012329 G C OR2W1 Silent p.L208L 0.53 TCGA-68-A59J-01 6 33632674 33632674 C G ITPR3 Silent p.L392L 0.46 TCGA-68-A59J-01 6 35477528 35477528 C A TULP1 Splice_Site p.X201_splice 0.50 TCGA-68-A59J-01 6 38851196 38851196 A G DNAH8 Silent p.L2483L 0.56 TCGA-68-A59J-01 6 47846350 47846350 G C PTCHD4 Missense_Mutation p.R744G 0.33 deleterious(0) probably_damaging(0.988) TCGA-68-A59J-01 6 52441678 52441678 G C TRAM2 Silent p.L12L 0.27 TCGA-68-A59J-01 6 52905948 52905948 C G ICK Silent p.L29L 0.05 TCGA-68-A59J-01 6 55638925 55638925 C A BMP5 Missense_Mutation p.A317S 0.25 tolerated(0.8) benign(0.048) TCGA-68-A59J-01 6 56044406 56044406 T G COL21A1 Silent p.R204R 0.41 TCGA-68-A59J-01 6 82936995 82936995 C T IBTK Missense_Mutation p.V190M 0.19 deleterious(0) probably_damaging(0.973) TCGA-68-A59J-01 6 90390338 90390338 G A MDN1 Missense_Mutation p.R4079C 0.18 benign(0) TCGA-68-A59J-01 6 90397080 90397080 C A MDN1 Missense_Mutation p.W3811C 0.18 possibly_damaging(0.703) TCGA-68-A59J-01 6 99858669 99858669 C - PNISR Frame_Shift_Del p.G150Vfs*12 0.16 TCGA-68-A59J-01 7 100377160 100377160 C A ZAN Missense_Mutation p.A2136E 0.31 unknown(0) TCGA-68-A59J-01 7 100454740 100454740 G T SLC12A9 Silent p.P233P 0.34 TCGA-68-A59J-01 7 111372298 111372298 C A DOCK4 Missense_Mutation p.G1813V 0.09 tolerated_low_confidence(0.15) benign(0.035) TCGA-68-A59J-01 7 123197939 123197939 C T NDUFA5 5'UTR 0.19 TCGA-68-A59J-01 7 12692386 12692386 C T SCIN 3'UTR 0.18 TCGA-68-A59J-01 7 127235907 127235907 G C FSCN3 Missense_Mutation p.E231Q 0.42 tolerated(0.17) benign(0.104) TCGA-68-A59J-01 7 127236410 127236410 C G FSCN3 Silent p.R290R 0.05 TCGA-68-A59J-01 7 128485131 128485131 C T FLNC Silent p.I1204I 0.16 TCGA-68-A59J-01 7 140507842 140507842 C A BRAF Missense_Mutation p.W210L 0.28 deleterious(0) probably_damaging(1) TCGA-68-A59J-01 7 150439371 150439371 T C GIMAP5 Silent p.L48L 0.19 TCGA-68-A59J-01 7 150439643 150439643 G T GIMAP5 Missense_Mutation p.G139V 0.16 deleterious(0) probably_damaging(1) TCGA-68-A59J-01 7 151927078 151927078 C T KMT2C Missense_Mutation p.G969E 0.05 probably_damaging(1) TCGA-68-A59J-01 7 18688191 18688191 G T HDAC9 Missense_Mutation p.R451L 0.34 deleterious(0) probably_damaging(0.933) TCGA-68-A59J-01 7 20685430 20685430 G T ABCB5 Missense_Mutation p.A244S 0.26 tolerated(0.24) probably_damaging(0.919) TCGA-68-A59J-01 7 26246053 26246053 T C CBX3 Silent p.F30F 0.20 TCGA-68-A59J-01 7 30921796 30921796 G C FAM188B Missense_Mutation p.V658L 0.22 deleterious(0) probably_damaging(0.998) TCGA-68-A59J-01 7 31683302 31683303 - A CCDC129 Frame_Shift_Ins p.H800Tfs*18 0.17 TCGA-68-A59J-01 7 4152982 4152982 A T SDK1 Missense_Mutation p.I1166F 0.34 tolerated(0.32) benign(0.028) TCGA-68-A59J-01 7 44621114 44621114 G C TMED4 Silent p.P107P 0.34 TCGA-68-A59J-01 7 44715846 44715846 C T OGDH Intron 0.13 TCGA-68-A59J-01 7 45077849 45077849 C T CCM2 Intron 0.21 TCGA-68-A59J-01 7 47847932 47847932 A G PKD1L1 Silent p.V2580V 0.36 TCGA-68-A59J-01 7 49951804 49951804 T A VWC2 3'UTR 0.22 TCGA-68-A59J-01 7 57188592 57188592 G T ZNF479 Missense_Mutation p.T177K 0.17 tolerated(0.12) possibly_damaging(0.889) TCGA-68-A59J-01 7 5923591 5923591 G A OCM Missense_Mutation p.A89T 0.20 deleterious(0) probably_damaging(0.945) TCGA-68-A59J-01 7 64168663 64168663 G C ZNF107 Missense_Mutation p.E661Q 0.26 deleterious(0.04) possibly_damaging(0.864) TCGA-68-A59J-01 7 73933957 73933957 C T GTF2IRD1 Missense_Mutation p.P307L 0.18 tolerated(0.08) benign(0.122) TCGA-68-A59J-01 7 73933960 73933960 C A GTF2IRD1 Missense_Mutation p.S308Y 0.17 deleterious(0.01) possibly_damaging(0.459) TCGA-68-A59J-01 7 82545794 82545794 G A PCLO Silent p.D3836D 0.32 TCGA-68-A59J-01 7 86416126 86416126 C A GRM3 Missense_Mutation p.L340I 0.34 tolerated(0.12) probably_damaging(0.975) TCGA-68-A59J-01 7 86469163 86469163 C T GRM3 Missense_Mutation p.T778M 0.29 deleterious(0) probably_damaging(0.997) TCGA-68-A59J-01 7 86469167 86469167 C A GRM3 Nonsense_Mutation p.C779* 0.29 TCGA-68-A59J-01 7 94228136 94228136 G T SGCE Missense_Mutation p.H402N 0.26 tolerated(0.06) possibly_damaging(0.457) TCGA-68-A59J-01 8 10466327 10466327 C A RP1L1 Missense_Mutation p.G1761W 0.39 unknown(0) TCGA-68-A59J-01 8 110457196 110457196 T A PKHD1L1 Missense_Mutation p.C1700S 0.05 deleterious(0) probably_damaging(0.999) TCGA-68-A59J-01 8 113332142 113332142 C T CSMD3 Missense_Mutation p.E2412K 0.19 deleterious(0.01) possibly_damaging(0.677) TCGA-68-A59J-01 8 116426257 116426257 T - TRPS1 Frame_Shift_Del p.E1294Sfs*11 0.17 TCGA-68-A59J-01 8 133935730 133935730 C G TG Missense_Mutation p.P1559R 0.17 tolerated(0.54) benign(0.017) TCGA-68-A59J-01 8 134232924 134232924 G - WISP1 Frame_Shift_Del p.V151Wfs*23 0.17 TCGA-68-A59J-01 8 139144913 139144913 C A FAM135B Missense_Mutation p.A1382S 0.27 deleterious(0) probably_damaging(0.998) TCGA-68-A59J-01 8 139180165 139180165 C A FAM135B Missense_Mutation p.D411Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-68-A59J-01 8 139180166 139180166 C A FAM135B Missense_Mutation p.E410D 0.18 deleterious(0) probably_damaging(0.999) TCGA-68-A59J-01 8 144695705 144695705 C A TSTA3 Missense_Mutation p.G267W 0.26 deleterious(0) probably_damaging(0.994) TCGA-68-A59J-01 8 144695706 144695706 A T TSTA3 Missense_Mutation p.H266Q 0.26 tolerated(0.3) benign(0) TCGA-68-A59J-01 8 145722674 145722674 C G PPP1R16A Missense_Mutation p.Q33E 0.09 deleterious(0) probably_damaging(0.997) TCGA-68-A59J-01 8 38853769 38853769 C T TM2D2 Missense_Mutation p.G64S 0.15 tolerated_low_confidence(0.83) benign(0) TCGA-68-A59J-01 8 41548079 41548079 C - ANK1 Frame_Shift_Del p.N1341Tfs*5 0.22 TCGA-68-A59J-01 8 55537931 55537931 G T RP1 Nonsense_Mutation p.E497* 0.20 TCGA-68-A59J-01 8 68340315 68340315 G T CPA6 Silent p.R365R 0.20 TCGA-68-A59J-01 8 77617439 77617439 T C ZFHX4 Silent p.G372G 0.27 TCGA-68-A59J-01 8 85774620 85774620 G A RALYL Missense_Mutation p.R181K 0.32 deleterious(0.04) possibly_damaging(0.55) TCGA-68-A59J-01 9 100071836 100071836 G C CCDC180 Missense_Mutation p.W114C 0.26 deleterious(0) probably_damaging(0.996) TCGA-68-A59J-01 9 101068411 101068411 C A GABBR2 Missense_Mutation p.V741L 0.37 tolerated(0.07) benign(0.068) TCGA-68-A59J-01 9 107584823 107584823 T A ABCA1 Missense_Mutation p.I928F 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-68-A59J-01 9 117071735 117071735 G T COL27A1 Nonsense_Mutation p.E1805* 0.43 TCGA-68-A59J-01 9 120476160 120476160 G A TLR4 Missense_Mutation p.C585Y 0.39 deleterious(0) probably_damaging(0.997) TCGA-68-A59J-01 9 125562698 125562698 G A OR1K1 Silent p.L99L 0.23 TCGA-68-A59J-01 9 128678110 128678110 A T PBX3 Silent p.G140G 0.24 TCGA-68-A59J-01 9 128723060 128723060 C G PBX3 Missense_Mutation p.T314R 0.18 tolerated(0.43) benign(0.025) TCGA-68-A59J-01 9 130887694 130887694 C A PTGES2 Silent p.L102L 0.29 TCGA-68-A59J-01 9 135073602 135073602 C A NTNG2 Missense_Mutation p.L155M 0.32 tolerated(0.14) possibly_damaging(0.52) TCGA-68-A59J-01 9 135933244 135933244 G T GTF3C5 Missense_Mutation p.Q486H 0.27 tolerated(0.06) benign(0.013) TCGA-68-A59J-01 9 135939845 135939845 G T CEL Missense_Mutation p.G44C 0.21 deleterious(0.01) benign(0.34) TCGA-68-A59J-01 9 138713936 138713936 C T CAMSAP1 Silent p.Q857Q 0.39 TCGA-68-A59J-01 9 21971096 21971096 C A CDKN2A Nonsense_Mutation p.E88* 0.50 TCGA-68-A59J-01 9 43627256 43627256 G C SPATA31A6 Silent p.P477P 0.27 TCGA-68-A59J-01 9 71152393 71152393 G T TMEM252 Missense_Mutation p.P99T 0.28 deleterious(0) probably_damaging(1) TCGA-68-A59J-01 9 712632 712632 C G KANK1 Silent p.L622L 0.44 TCGA-68-A59J-01 9 84532772 84532772 C A SPATA31D5P RNA 0.33 TCGA-68-A59J-01 9 88937264 88937264 C G ZCCHC6 Missense_Mutation p.D1002H 0.36 deleterious(0.03) probably_damaging(0.98) TCGA-68-A59J-01 X 100629598 100629598 T C BTK Missense_Mutation p.I56V 0.44 tolerated(0.44) benign(0.001) TCGA-68-A59J-01 X 135428682 135428682 A G GPR112 Silent p.A939A 0.39 TCGA-68-A59J-01 X 135477547 135477547 A G GPR112 Splice_Site p.X2694_splice 0.30 TCGA-68-A59J-01 X 140786524 140786524 G T SPANXD Missense_Mutation p.S13R 0.38 tolerated(0.1) probably_damaging(0.997) TCGA-68-A59J-01 X 149905085 149905085 G T MTMR1 Nonsense_Mutation p.E359* 0.45 TCGA-68-A59J-01 X 151935863 151935863 C G MAGEA3 Missense_Mutation p.E102Q 0.21 deleterious(0.03) probably_damaging(0.95) TCGA-68-A59J-01 X 153063889 153063889 G T SSR4 3'UTR 0.75 TCGA-68-A59J-01 X 1761834 1761834 C A ASMT Missense_Mutation p.S350Y 0.20 deleterious(0.01) possibly_damaging(0.77) TCGA-68-A59J-01 X 34149573 34149573 C T FAM47A Missense_Mutation p.D275N 0.18 tolerated(0.41) possibly_damaging(0.728) TCGA-68-A59J-01 X 35938063 35938063 C T CXorf22 Silent p.F49F 0.45 TCGA-68-A59J-01 X 40569283 40569283 T A MED14 Missense_Mutation p.H374L 0.47 deleterious(0) probably_damaging(0.999) TCGA-68-A59J-01 X 48767194 48767194 G C SLC35A2 Silent p.A57A 0.26 TCGA-68-A59J-01 X 48772408 48772408 G A PIM2 Missense_Mutation p.R162C 0.18 deleterious(0) probably_damaging(1) TCGA-68-A59J-01 X 50147100 50147100 T A DGKK RNA 0.23 TCGA-68-A59J-01 X 50378655 50378655 G T SHROOM4 Missense_Mutation p.Q140K 0.11 deleterious(0) probably_damaging(0.971) TCGA-68-A59J-01 X 54275724 54275724 G T WNK3 Silent p.S1019S 0.21 TCGA-68-A59J-01 X 54949014 54949014 C A TRO Missense_Mutation p.P17T 0.23 deleterious_low_confidence(0) unknown(0) TCGA-68-A59J-01 X 54955962 54955962 C T TRO Silent p.T935T 0.31 TCGA-68-A59J-01 X 65393488 65393488 C G HEPH Missense_Mutation p.P211R 0.33 deleterious(0.01) probably_damaging(0.989) TCGA-68-A59J-01 X 71458704 71458704 G A ERCC6L Missense_Mutation p.H20Y 0.29 tolerated(0.24) benign(0) TCGA-68-A59J-01 X 71838681 71838681 C G PHKA1 Missense_Mutation p.E750Q 0.44 tolerated(0.26) benign(0.043) TCGA-68-A59J-01 X 78427495 78427495 G A GPR174 Missense_Mutation p.E331K 0.26 tolerated_low_confidence(0.37) benign(0.024) TCGA-68-A59J-01 X 79277875 79277875 G C TBX22 Missense_Mutation p.R36P 0.42 tolerated(0.19) benign(0.061) TCGA-68-A59J-01 X 88008732 88008732 T C CPXCR1 Missense_Mutation p.L106S 0.46 deleterious(0.03) probably_damaging(0.934) TCGA-68-A59J-01 X 90690605 90690605 G T PABPC5 Missense_Mutation p.G10V 0.27 deleterious_low_confidence(0.04) probably_damaging(0.953) TCGA-68-A59J-01 X 91132420 91132420 G A PCDH11X Missense_Mutation p.G394D 0.29 deleterious(0) probably_damaging(0.987) TCGA-68-A59J-01 X 91873632 91873632 G T PCDH11X Missense_Mutation p.S1246I 0.42 deleterious_low_confidence(0) possibly_damaging(0.811) TCGA-6A-AB49-01 10 101643802 101643802 C A DNMBP Missense_Mutation p.M1321I 0.70 deleterious(0.01) probably_damaging(0.998) TCGA-6A-AB49-01 10 101643803 101643803 A T DNMBP Missense_Mutation p.M1321K 0.69 deleterious(0) probably_damaging(0.998) TCGA-6A-AB49-01 10 115417240 115417240 G T NRAP Missense_Mutation p.L117M 0.68 tolerated(0.09) benign(0.08) TCGA-6A-AB49-01 10 127683994 127683994 A G FANK1 Missense_Mutation p.I109V 0.68 tolerated(0.1) benign(0.004) TCGA-6A-AB49-01 10 131639293 131639293 C G EBF3 Missense_Mutation p.G450A 0.56 deleterious_low_confidence(0.03) possibly_damaging(0.475) TCGA-6A-AB49-01 10 134162531 134162531 G T LRRC27 Intron 0.77 TCGA-6A-AB49-01 10 135122944 135122944 G T ZNF511 Silent p.V68V 0.83 TCGA-6A-AB49-01 10 26851273 26851273 C G APBB1IP Missense_Mutation p.T463S 0.62 tolerated(0.76) benign(0) TCGA-6A-AB49-01 10 30315463 30315463 T C KIAA1462 Missense_Mutation p.D1205G 0.64 deleterious(0.03) benign(0.066) TCGA-6A-AB49-01 10 38241245 38241245 C A ZNF25 Missense_Mutation p.G394V 0.60 deleterious(0) probably_damaging(1) TCGA-6A-AB49-01 10 38407665 38407665 G A ZNF37A Missense_Mutation p.G529E 0.36 deleterious(0.02) possibly_damaging(0.682) TCGA-6A-AB49-01 10 52103519 52103519 G T SGMS1 Missense_Mutation p.P119H 0.54 tolerated(0.11) benign(0.008) TCGA-6A-AB49-01 10 75561165 75561165 C A ZSWIM8 Missense_Mutation p.T1806K 0.11 deleterious(0) probably_damaging(0.941) TCGA-6A-AB49-01 10 89717624 89717640 GTCTGCCAGCTAAAGGT - PTEN Frame_Shift_Del p.V217Efs*20 0.51 TCGA-6A-AB49-01 11 106810461 106810461 G T GUCY1A2 Missense_Mutation p.Q311K 0.39 tolerated(0.93) benign(0.004) TCGA-6A-AB49-01 11 108044008 108044008 T A NPAT Missense_Mutation p.K568M 0.28 tolerated(0.05) probably_damaging(0.91) TCGA-6A-AB49-01 11 116691840 116691840 C - APOA4 Frame_Shift_Del p.E312Kfs*29 0.27 TCGA-6A-AB49-01 11 123893778 123893778 G T OR10G9 Missense_Mutation p.G20V 0.10 tolerated(0.07) benign(0) TCGA-6A-AB49-01 11 130078462 130078462 G T ST14 Nonsense_Mutation p.E718* 0.14 TCGA-6A-AB49-01 11 13441274 13441274 C G BTBD10 Missense_Mutation p.S106T 0.28 tolerated_low_confidence(0.11) benign(0.049) TCGA-6A-AB49-01 11 30937123 30937123 C A DCDC1 Missense_Mutation p.E1196D 0.54 tolerated(0.17) benign(0.388) TCGA-6A-AB49-01 11 36297702 36297702 G A COMMD9 Silent p.C147C 0.27 TCGA-6A-AB49-01 11 3659915 3659915 C - ART5 3'UTR 0.36 TCGA-6A-AB49-01 11 3691081 3691081 G C CHRNA10 Missense_Mutation p.T51R 0.43 deleterious(0.01) possibly_damaging(0.879) TCGA-6A-AB49-01 11 44286520 44286520 T A ALX4 Missense_Mutation p.S374C 0.26 deleterious(0) possibly_damaging(0.669) TCGA-6A-AB49-01 11 4471262 4471262 C G OR52K2 Silent p.A231A 0.41 TCGA-6A-AB49-01 11 46726950 46726950 G C ZNF408 Missense_Mutation p.R567P 0.52 deleterious(0) probably_damaging(0.999) TCGA-6A-AB49-01 11 47200035 47200035 C A PACSIN3 Silent p.T347T 0.44 TCGA-6A-AB49-01 11 51515523 51515523 C A OR4C46 Missense_Mutation p.T81K 0.43 deleterious_low_confidence(0.02) benign(0.017) TCGA-6A-AB49-01 11 5221667 5221667 G A OR51V1 Silent p.Y88Y 0.38 TCGA-6A-AB49-01 11 55861509 55861509 C A OR8I2 Silent p.S242S 0.21 TCGA-6A-AB49-01 11 55872601 55872601 T A OR8H2 Missense_Mutation p.L28Q 0.48 deleterious(0) probably_damaging(0.98) TCGA-6A-AB49-01 11 56043896 56043896 C A OR5T1 Missense_Mutation p.T261K 0.24 deleterious(0) possibly_damaging(0.616) TCGA-6A-AB49-01 11 56409884 56409884 T C OR5AP2 Missense_Mutation p.N11S 0.25 deleterious(0) probably_damaging(0.996) TCGA-6A-AB49-01 11 58206870 58206870 G C OR5B12 Missense_Mutation p.T252R 0.22 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-6A-AB49-01 11 59225237 59225237 C A OR4D6 Missense_Mutation p.D268E 0.60 deleterious(0.01) probably_damaging(0.999) TCGA-6A-AB49-01 11 61543873 61543873 C T MYRF Missense_Mutation p.R490C 0.24 deleterious(0) probably_damaging(0.993) TCGA-6A-AB49-01 11 62292142 62292142 T A AHNAK Missense_Mutation p.K3249N 0.19 benign(0.053) TCGA-6A-AB49-01 11 62372646 62372646 C G EML3 Missense_Mutation p.G641R 0.45 deleterious(0) probably_damaging(1) TCGA-6A-AB49-01 11 62557546 62557546 C A TMEM179B 3'UTR 0.27 TCGA-6A-AB49-01 11 63396662 63396662 G A ATL3 3'UTR 0.44 TCGA-6A-AB49-01 11 6498436 6498436 C A ARFIP2 Silent p.G311G 0.48 TCGA-6A-AB49-01 11 67068552 67068552 G T ANKRD13D Missense_Mutation p.A389S 0.38 tolerated(0.33) probably_damaging(0.999) TCGA-6A-AB49-01 11 75694558 75694558 G A UVRAG Splice_Site p.X276_splice 0.22 TCGA-6A-AB49-01 11 78369430 78369430 T C TENM4 Silent p.R2661R 0.14 TCGA-6A-AB49-01 11 83641425 83641425 G T DLG2 Nonsense_Mutation p.S481* 0.15 TCGA-6A-AB49-01 11 93844983 93844983 C A HEPHL1 Missense_Mutation p.L1135I 0.46 tolerated_low_confidence(0.38) benign(0.002) TCGA-6A-AB49-01 11 9459760 9459760 G C IPO7 Missense_Mutation p.A875P 0.38 deleterious(0.01) possibly_damaging(0.786) TCGA-6A-AB49-01 11 94861625 94861625 G C ENDOD1 Missense_Mutation p.A129P 0.12 deleterious(0) probably_damaging(1) TCGA-6A-AB49-01 12 108954703 108954703 C A SART3 Silent p.A76A 0.27 TCGA-6A-AB49-01 12 111772480 111772480 G A CUX2 Silent p.K1054K 0.58 TCGA-6A-AB49-01 12 111801267 111801267 C A FAM109A Missense_Mutation p.A2S 0.33 tolerated_low_confidence(0.16) benign(0.021) TCGA-6A-AB49-01 12 111801268 111801268 C A FAM109A Splice_Site p.X2_splice 0.38 TCGA-6A-AB49-01 12 11183319 11183319 G A TAS2R31 Missense_Mutation p.L206F 0.33 deleterious(0.02) possibly_damaging(0.77) TCGA-6A-AB49-01 12 113822010 113822010 A T PLBD2 Missense_Mutation p.N353I 0.41 deleterious(0) probably_damaging(1) TCGA-6A-AB49-01 12 125302118 125302118 C - SCARB1 Frame_Shift_Del p.E88Sfs*59 0.48 TCGA-6A-AB49-01 12 13065040 13065040 G T GPRC5A Silent p.T315T 0.34 TCGA-6A-AB49-01 12 130926781 130926781 C A RIMBP2 Missense_Mutation p.E355D 0.54 deleterious(0) probably_damaging(0.997) TCGA-6A-AB49-01 12 15742421 15742421 C A PTPRO Missense_Mutation p.A1148D 0.37 deleterious(0) probably_damaging(0.981) TCGA-6A-AB49-01 12 21447014 21447014 G T SLCO1A2 Missense_Mutation p.D434E 0.27 tolerated(0.58) benign(0.001) TCGA-6A-AB49-01 12 31249814 31249814 A G DDX11 Missense_Mutation p.E551G 0.13 tolerated(0.07) benign(0.284) TCGA-6A-AB49-01 12 3149661 3149661 G T TEAD4 3'UTR 0.41 TCGA-6A-AB49-01 12 40716959 40716959 C T LRRK2 Intron 0.21 TCGA-6A-AB49-01 12 4479664 4479664 G C FGF23 Missense_Mutation p.P201A 0.34 tolerated(0.06) probably_damaging(0.999) TCGA-6A-AB49-01 12 49374472 49374472 G A WNT1 Silent p.T208T 0.46 TCGA-6A-AB49-01 12 49485015 49485015 C T DHH Missense_Mutation p.R154H 0.27 deleterious(0) probably_damaging(0.991) TCGA-6A-AB49-01 12 5603750 5603750 G T NTF3 Missense_Mutation p.V137L 0.41 tolerated(0.41) benign(0.001) TCGA-6A-AB49-01 12 56726600 56726600 G A PAN2 Silent p.H93H 0.51 TCGA-6A-AB49-01 12 56827636 56827636 C A TIMELESS Missense_Mutation p.A58S 0.27 tolerated(0.42) benign(0.038) TCGA-6A-AB49-01 12 62148756 62148756 G T FAM19A2 Nonsense_Mutation p.C52* 0.19 TCGA-6A-AB49-01 12 62974096 62974096 A T MON2 Missense_Mutation p.N1532I 0.21 deleterious(0.02) benign(0.038) TCGA-6A-AB49-01 12 64858157 64858157 G T TBK1 Missense_Mutation p.C91F 0.41 tolerated(0.07) benign(0.407) TCGA-6A-AB49-01 12 6647303 6647303 G A GAPDH Silent p.V325V 0.30 TCGA-6A-AB49-01 12 69263141 69263141 C A CPM Missense_Mutation p.G251C 0.20 deleterious(0) probably_damaging(1) TCGA-6A-AB49-01 12 72936133 72936133 G T TRHDE Missense_Mutation p.L550F 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-6A-AB49-01 12 81768502 81768502 C A PPFIA2 Nonsense_Mutation p.E393* 0.43 TCGA-6A-AB49-01 12 8672906 8672906 G A CLEC4D Missense_Mutation p.V157M 0.35 tolerated(0.07) possibly_damaging(0.519) TCGA-6A-AB49-01 13 109318305 109318305 C A MYO16 Missense_Mutation p.P12T 0.76 deleterious(0) probably_damaging(1) TCGA-6A-AB49-01 13 109318306 109318306 C A MYO16 Missense_Mutation p.P12H 0.76 deleterious(0) probably_damaging(1) TCGA-6A-AB49-01 13 109562354 109562354 G C MYO16 Missense_Mutation p.R572T 0.62 deleterious(0.02) possibly_damaging(0.677) TCGA-6A-AB49-01 13 29600229 29600229 A G MTUS2 Missense_Mutation p.D475G 0.74 tolerated(0.3) benign(0.004) TCGA-6A-AB49-01 13 39451339 39451339 C G FREM2 Missense_Mutation p.S2877C 0.58 deleterious(0) probably_damaging(0.956) TCGA-6A-AB49-01 13 60413569 60413569 C A DIAPH3 Silent p.T917T 0.59 TCGA-6A-AB49-01 13 70293587 70293587 G T KLHL1 Silent p.A643A 0.66 TCGA-6A-AB49-01 13 99127201 99127202 CT G STK24 Frame_Shift_Del p.E169Afs*2 0.29 TCGA-6A-AB49-01 14 100165828 100165828 A T CYP46A1 Missense_Mutation p.N103I 0.59 tolerated(0.15) benign(0.021) TCGA-6A-AB49-01 14 20586499 20586499 A T OR4K17 Missense_Mutation p.I312F 0.27 tolerated(0.88) benign(0.007) TCGA-6A-AB49-01 14 23390199 23390199 T A PRMT5 Nonsense_Mutation p.K610* 0.41 TCGA-6A-AB49-01 14 24036334 24036334 C A AP1G2 Missense_Mutation p.A64S 0.41 deleterious(0) probably_damaging(1) TCGA-6A-AB49-01 14 42356528 42356528 G C LRFN5 Missense_Mutation p.A234P 0.32 deleterious(0.01) probably_damaging(0.961) TCGA-6A-AB49-01 14 42356802 42356802 G A LRFN5 Missense_Mutation p.G325E 0.43 tolerated(0.05) possibly_damaging(0.483) TCGA-6A-AB49-01 14 53112881 53112881 G A ERO1L Missense_Mutation p.A446V 0.47 tolerated(0.05) probably_damaging(0.98) TCGA-6A-AB49-01 14 79181423 79181423 G T NRXN3 Missense_Mutation p.W289L 0.55 deleterious(0) probably_damaging(0.986) TCGA-6A-AB49-01 15 100821472 100821472 C A ADAMTS17 Nonsense_Mutation p.E251* 0.20 TCGA-6A-AB49-01 15 102304725 102304725 A G DNM1P47 RNA 0.09 TCGA-6A-AB49-01 15 22383000 22383000 C G OR4N4 Missense_Mutation p.N176K 0.37 deleterious(0) probably_damaging(0.936) TCGA-6A-AB49-01 15 25219540 25219540 C A SNRPN 5'UTR 0.48 TCGA-6A-AB49-01 15 25332807 25332807 G T SNORD116-23 5'Flank 0.24 TCGA-6A-AB49-01 15 25425526 25425526 A T SNORD115-6 5'Flank 0.47 TCGA-6A-AB49-01 15 25448435 25448435 A - SNORD115-18 RNA 0.20 TCGA-6A-AB49-01 15 25479252 25479252 C A SNORD115-33 3'Flank 0.21 TCGA-6A-AB49-01 15 35084759 35084759 C A ACTC1 Missense_Mutation p.D156Y 0.49 deleterious_low_confidence(0) probably_damaging(1) TCGA-6A-AB49-01 15 35149134 35149134 G A AQR Silent p.P1439P 0.30 TCGA-6A-AB49-01 15 38643633 38643633 G T SPRED1 Missense_Mutation p.C368F 0.21 tolerated(0.21) probably_damaging(1) TCGA-6A-AB49-01 15 40094312 40094312 G A GPR176 Missense_Mutation p.S190F 0.14 deleterious(0) probably_damaging(0.998) TCGA-6A-AB49-01 15 45411416 45411416 T C DUOXA1 Missense_Mutation p.Y307C 0.25 deleterious(0.01) probably_damaging(0.974) TCGA-6A-AB49-01 15 45898608 45898608 C G BLOC1S6 Missense_Mutation p.L139V 0.25 deleterious(0.03) probably_damaging(0.996) TCGA-6A-AB49-01 15 49935789 49935789 A T DTWD1 3'UTR 0.22 TCGA-6A-AB49-01 15 58471393 58471393 C A AQP9 Missense_Mutation p.P188T 0.33 deleterious(0) probably_damaging(0.998) TCGA-6A-AB49-01 15 58471394 58471394 C A AQP9 Missense_Mutation p.P188H 0.33 deleterious(0) probably_damaging(1) TCGA-6A-AB49-01 15 63004126 63004126 G T TLN2 Missense_Mutation p.Q828H 0.64 tolerated(0.11) benign(0.103) TCGA-6A-AB49-01 15 63004127 63004127 G T TLN2 Missense_Mutation p.A829S 0.62 tolerated(0.05) possibly_damaging(0.598) TCGA-6A-AB49-01 15 65113430 65113430 C A PIF1 Missense_Mutation p.C341F 0.22 deleterious(0) probably_damaging(0.996) TCGA-6A-AB49-01 15 70351749 70351749 C A TLE3 Missense_Mutation p.E255D 0.56 tolerated(0.22) benign(0.147) TCGA-6A-AB49-01 15 72190733 72190733 C A MYO9A Missense_Mutation p.D1371Y 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.594) TCGA-6A-AB49-01 15 79339233 79339233 C A RASGRF1 Missense_Mutation p.V245L 0.53 tolerated(0.06) possibly_damaging(0.61) TCGA-6A-AB49-01 15 79339234 79339234 C A RASGRF1 Silent p.V244V 0.52 TCGA-6A-AB49-01 15 84611484 84611484 C G ADAMTSL3 Missense_Mutation p.Q752E 0.17 deleterious(0) possibly_damaging(0.648) TCGA-6A-AB49-01 15 88472415 88472415 A T NTRK3 Intron 0.36 TCGA-6A-AB49-01 15 91295035 91295035 A G BLM Missense_Mutation p.K273R 0.41 tolerated(0.3) benign(0.081) TCGA-6A-AB49-01 16 18844425 18844425 C T SMG1 Missense_Mutation p.E2877K 0.67 deleterious(0.02) probably_damaging(0.971) TCGA-6A-AB49-01 16 20334250 20334250 T A GP2 Missense_Mutation p.E199V 0.67 tolerated(0.07) benign(0.285) TCGA-6A-AB49-01 16 30038095 30038095 G T FAM57B Missense_Mutation p.F93L 0.60 deleterious(0) probably_damaging(0.969) TCGA-6A-AB49-01 16 5108605 5108605 G C C16orf89 Missense_Mutation p.D172E 0.36 tolerated(0.31) benign(0.036) TCGA-6A-AB49-01 16 67472539 67472539 A T ATP6V0D1 Nonsense_Mutation p.Y316* 0.38 TCGA-6A-AB49-01 16 69199366 69199366 C T CIRH1A Silent p.P590P 0.67 TCGA-6A-AB49-01 17 10250103 10250103 G T MYH13 Missense_Mutation p.A386D 0.66 deleterious(0) possibly_damaging(0.905) TCGA-6A-AB49-01 17 10440688 10440688 C A MYH2 Missense_Mutation p.G587C 0.79 deleterious(0) probably_damaging(0.997) TCGA-6A-AB49-01 17 11660964 11660964 T G DNAH9 Missense_Mutation p.L2317W 0.49 possibly_damaging(0.718) TCGA-6A-AB49-01 17 2202561 2202561 C G SMG6 Missense_Mutation p.A496P 0.75 tolerated(0.17) benign(0.002) TCGA-6A-AB49-01 17 26096589 26096589 T C NOS2 Missense_Mutation p.M611V 0.18 tolerated(0.22) benign(0.005) TCGA-6A-AB49-01 17 26653959 26653959 C T TMEM97 3'UTR 0.40 TCGA-6A-AB49-01 17 27042056 27042056 G C RAB34 Missense_Mutation p.L257V 0.24 tolerated(0.08) benign(0.192) TCGA-6A-AB49-01 17 29654666 29654666 G - NF1 Frame_Shift_Del p.G1807Afs*56 0.42 TCGA-6A-AB49-01 17 33592911 33592911 G T SLFN5 3'UTR 0.42 TCGA-6A-AB49-01 17 33592926 33592926 G T SLFN5 3'UTR 0.54 TCGA-6A-AB49-01 17 33592962 33592962 G A SLFN5 3'UTR 0.52 TCGA-6A-AB49-01 17 3518728 3518728 G A SHPK Silent p.Y309Y 0.18 TCGA-6A-AB49-01 17 37566003 37566003 T C MED1 Missense_Mutation p.D824G 0.07 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-6A-AB49-01 17 48693659 48693659 C A CACNA1G Silent p.I1645I 0.72 TCGA-6A-AB49-01 17 51900791 51900791 G T KIF2B Missense_Mutation p.V133L 0.86 tolerated(0.57) benign(0.004) TCGA-6A-AB49-01 17 56643155 56643155 G T TEX14 Missense_Mutation p.T1352K 0.64 tolerated(0.65) benign(0.006) TCGA-6A-AB49-01 17 56770082 56770082 G T RAD51C Missense_Mutation p.K26N 0.33 deleterious(0.02) possibly_damaging(0.495) TCGA-6A-AB49-01 17 61987411 61987411 G T CSHL1 Intron 0.77 TCGA-6A-AB49-01 17 62050093 62050093 C T SCN4A Missense_Mutation p.A37T 0.61 tolerated(0.11) benign(0.005) TCGA-6A-AB49-01 17 72862250 72862250 C T FDXR Intron 0.58 TCGA-6A-AB49-01 17 76490758 76490758 C A DNAH17 Missense_Mutation p.D2049Y 0.69 probably_damaging(1) TCGA-6A-AB49-01 18 13884686 13884686 A T MC2R Missense_Mutation p.F278I 0.18 deleterious(0) benign(0.167) TCGA-6A-AB49-01 18 19996301 19996301 G T CTAGE1 Missense_Mutation p.P492T 0.59 deleterious(0.02) possibly_damaging(0.499) TCGA-6A-AB49-01 18 22029842 22029842 A T IMPACT Silent p.L273L 0.59 TCGA-6A-AB49-01 18 25532235 25532235 C A CDH2 Missense_Mutation p.G868V 0.68 deleterious(0) probably_damaging(0.999) TCGA-6A-AB49-01 18 29049114 29049114 G C DSG3 Missense_Mutation p.V567L 0.70 tolerated(1) benign(0.004) TCGA-6A-AB49-01 18 29437711 29437711 C T TRAPPC8 Missense_Mutation p.A994T 0.66 tolerated(0.22) benign(0.06) TCGA-6A-AB49-01 18 30350110 30350110 G C KLHL14 Missense_Mutation p.L149V 0.65 deleterious(0.01) benign(0.228) TCGA-6A-AB49-01 18 30350111 30350111 G T KLHL14 Silent p.T148T 0.66 TCGA-6A-AB49-01 18 320043 320043 C A COLEC12 3'UTR 0.39 TCGA-6A-AB49-01 18 48333079 48333079 C G MRO Missense_Mutation p.D95H 0.67 tolerated(0.32) probably_damaging(0.919) TCGA-6A-AB49-01 18 619226 619226 G T CLUL1 Silent p.V40V 0.11 TCGA-6A-AB49-01 18 74692411 74692411 C G RP11-862L9.3 5'Flank 0.28 TCGA-6A-AB49-01 18 77475192 77475192 G T CTDP1 Nonsense_Mutation p.E578* 0.45 TCGA-6A-AB49-01 19 17571702 17571702 G T NXNL1 5'UTR 0.62 TCGA-6A-AB49-01 19 17918925 17918925 C G B3GNT3 Missense_Mutation p.C103W 0.21 deleterious(0) probably_damaging(1) TCGA-6A-AB49-01 19 22272179 22272179 A T ZNF257 Missense_Mutation p.N543Y 0.75 tolerated(1) benign(0) TCGA-6A-AB49-01 19 34263059 34263059 G T CHST8 Silent p.A122A 0.27 TCGA-6A-AB49-01 19 36336642 36336642 G T NPHS1 Silent p.A562A 0.49 TCGA-6A-AB49-01 19 36336643 36336643 G T NPHS1 Missense_Mutation p.A562D 0.51 tolerated(0.07) possibly_damaging(0.493) TCGA-6A-AB49-01 19 36430765 36430765 G T LRFN3 Silent p.L146L 0.27 TCGA-6A-AB49-01 19 36939941 36939941 C T ZNF566 Missense_Mutation p.E400K 0.27 tolerated(0.1) benign(0.001) TCGA-6A-AB49-01 19 3831757 3831757 T C ZFR2 Missense_Mutation p.T167A 0.19 tolerated(0.36) benign(0.003) TCGA-6A-AB49-01 19 40366526 40366526 G A FCGBP Silent p.L4570L 0.33 TCGA-6A-AB49-01 19 41743953 41743953 A C AXL Silent p.L296L 0.38 TCGA-6A-AB49-01 19 42569390 42569390 C G GRIK5 Missense_Mutation p.E77Q 0.29 tolerated(0.08) benign(0.059) TCGA-6A-AB49-01 19 43234068 43234068 G T PSG3 Missense_Mutation p.P284T 0.24 tolerated(0.17) possibly_damaging(0.904) TCGA-6A-AB49-01 19 45818854 45818854 C A CKM Missense_Mutation p.G117V 0.26 deleterious(0.02) benign(0.051) TCGA-6A-AB49-01 19 45818855 45818855 C T CKM Missense_Mutation p.G117S 0.26 tolerated(0.13) benign(0.213) TCGA-6A-AB49-01 19 49378933 49378933 C T PPP1R15A Silent p.A576A 0.31 TCGA-6A-AB49-01 19 51330227 51330227 G A KLK15 Missense_Mutation p.R130C 0.25 tolerated(0.06) benign(0.126) TCGA-6A-AB49-01 19 54297251 54297251 C A NLRP12 3'UTR 0.41 TCGA-6A-AB49-01 19 54327236 54327236 C A NLRP12 Missense_Mutation p.G65W 0.28 deleterious(0) probably_damaging(1) TCGA-6A-AB49-01 19 54445334 54445334 G A CACNG7 Silent p.A205A 0.15 TCGA-6A-AB49-01 19 55445990 55445990 C G NLRP7 Missense_Mutation p.E780Q 0.45 deleterious(0.02) benign(0.004) TCGA-6A-AB49-01 19 55447686 55447686 A G NLRP7 Missense_Mutation p.M748T 0.21 tolerated(0.09) benign(0.067) TCGA-6A-AB49-01 19 56490842 56490842 G T NLRP8 Missense_Mutation p.D987Y 0.24 deleterious(0.02) probably_damaging(1) TCGA-6A-AB49-01 19 56530724 56530724 G T NLRP5 Missense_Mutation p.M194I 0.23 tolerated(0.45) benign(0) TCGA-6A-AB49-01 19 58639406 58639406 C A ZNF329 Missense_Mutation p.G489W 0.48 deleterious(0) probably_damaging(1) TCGA-6A-AB49-01 19 6678218 6678218 T A C3 Nonsense_Mutation p.K1599* 0.73 TCGA-6A-AB49-01 19 6710997 6710997 C A C3 Splice_Site p.X493_splice 0.66 TCGA-6A-AB49-01 1 103427762 103427762 G T COL11A1 Missense_Mutation p.F1028L 0.66 unknown(0) TCGA-6A-AB49-01 1 109803786 109803786 G C CELSR2 Missense_Mutation p.E1361Q 0.79 deleterious(0.01) possibly_damaging(0.842) TCGA-6A-AB49-01 1 117640022 117640022 G C TTF2 Missense_Mutation p.G1079A 0.42 deleterious(0) probably_damaging(1) TCGA-6A-AB49-01 1 118537067 118537067 G A SPAG17 Missense_Mutation p.L1714F 0.70 deleterious(0) probably_damaging(0.998) TCGA-6A-AB49-01 1 1236037 1236037 A G ACAP3 Missense_Mutation p.F125S 0.50 deleterious(0) probably_damaging(0.979) TCGA-6A-AB49-01 1 1322517 1322537 CCGGGGGTCAAAGGGCAGCCA - CCNL2 3'UTR 0.55 TCGA-6A-AB49-01 1 144874818 144874818 C A PDE4DIP Missense_Mutation p.S1597I 0.38 deleterious(0) possibly_damaging(0.692) TCGA-6A-AB49-01 1 149755593 149755593 A T FCGR1A Silent p.P29P 0.50 TCGA-6A-AB49-01 1 158811921 158811921 T A MNDA Intron 0.77 TCGA-6A-AB49-01 1 159163301 159163301 C A CADM3 Missense_Mutation p.S191R 0.71 deleterious(0.01) possibly_damaging(0.52) TCGA-6A-AB49-01 1 16059000 16059000 G T PLEKHM2 Missense_Mutation p.E927D 0.73 tolerated(0.21) benign(0.003) TCGA-6A-AB49-01 1 16255882 16255882 T G SPEN Silent p.S1049S 0.33 TCGA-6A-AB49-01 1 169510122 169510122 A C F5 Silent p.L1402L 0.77 TCGA-6A-AB49-01 1 173616090 173616090 C T ANKRD45 Missense_Mutation p.E131K 0.62 tolerated(0.07) possibly_damaging(0.588) TCGA-6A-AB49-01 1 173883939 173883939 T C SERPINC1 Missense_Mutation p.I54V 0.70 tolerated(0.19) benign(0.002) TCGA-6A-AB49-01 1 175066810 175066810 G T TNN Missense_Mutation p.A616S 0.70 deleterious(0.01) possibly_damaging(0.656) TCGA-6A-AB49-01 1 175348721 175348721 C A TNR Missense_Mutation p.G644C 0.71 tolerated(0.12) possibly_damaging(0.697) TCGA-6A-AB49-01 1 175375867 175375867 C A TNR 5'UTR 0.71 TCGA-6A-AB49-01 1 176734888 176734888 G T PAPPA2 Missense_Mutation p.G1413V 0.74 deleterious(0.04) possibly_damaging(0.634) TCGA-6A-AB49-01 1 183253896 183253896 G T NMNAT2 Missense_Mutation p.L160I 0.78 tolerated(0.13) benign(0.026) TCGA-6A-AB49-01 1 200968534 200968534 C A KIF21B Nonsense_Mutation p.E610* 0.81 TCGA-6A-AB49-01 1 20248861 20248861 C T PLA2G2E Silent p.L72L 0.72 TCGA-6A-AB49-01 1 20249180 20249180 G T PLA2G2E Missense_Mutation p.L37M 0.69 deleterious(0.01) probably_damaging(0.993) TCGA-6A-AB49-01 1 203743792 203743792 C G LAX1 Missense_Mutation p.L394V 0.58 tolerated(0.14) benign(0.086) TCGA-6A-AB49-01 1 215408539 215408539 G T KCNK2 3'UTR 0.77 TCGA-6A-AB49-01 1 215914746 215914746 A G USH2A Silent p.N3894N 0.66 TCGA-6A-AB49-01 1 237632487 237632487 G T RYR2 Missense_Mutation p.G570C 0.73 probably_damaging(0.999) TCGA-6A-AB49-01 1 237802366 237802366 G A RYR2 Missense_Mutation p.R2327K 0.92 possibly_damaging(0.705) TCGA-6A-AB49-01 1 237868554 237868554 G T RYR2 Missense_Mutation p.G3164V 0.91 possibly_damaging(0.461) TCGA-6A-AB49-01 1 247592936 247592936 G T NLRP3 Missense_Mutation p.V736F 0.71 deleterious(0) benign(0.013) TCGA-6A-AB49-01 1 248201693 248201693 C A OR2L2 Missense_Mutation p.L42I 0.75 tolerated(0.34) benign(0.012) TCGA-6A-AB49-01 1 248486947 248486947 G T OR2M7 Silent p.G308G 0.70 TCGA-6A-AB49-01 1 248570281 248570292 CCATTCTCACAC - OR2T1 In_Frame_Del p.I330_P333del 0.13 TCGA-6A-AB49-01 1 248844909 248844909 C A OR14I1 Missense_Mutation p.A233S 0.73 tolerated(0.88) benign(0.055) TCGA-6A-AB49-01 1 249212010 249212010 C A PGBD2 Silent p.I409I 0.75 TCGA-6A-AB49-01 1 27874971 27874971 C A AHDC1 Missense_Mutation p.W1219L 0.79 deleterious(0) possibly_damaging(0.504) TCGA-6A-AB49-01 1 35824655 35824655 A G ZMYM4 Missense_Mutation p.Y72C 0.16 tolerated_low_confidence(0.17) benign(0.006) TCGA-6A-AB49-01 1 36937728 36937728 C G CSF3R Missense_Mutation p.R337T 0.57 deleterious(0.03) benign(0.16) TCGA-6A-AB49-01 1 39797559 39797559 G A MACF1 Intron 0.66 TCGA-6A-AB49-01 1 45293088 45293088 C T PTCH2 Missense_Mutation p.R786H 0.82 deleterious(0.01) possibly_damaging(0.522) TCGA-6A-AB49-01 1 51868109 51868109 C A EPS15 Missense_Mutation p.G627V 0.66 deleterious(0.04) benign(0.237) TCGA-6A-AB49-01 1 52231512 52231512 C T OSBPL9 Missense_Mutation p.P276L 0.58 tolerated(0.14) possibly_damaging(0.716) TCGA-6A-AB49-01 1 6188239 6188239 T C CHD5 Missense_Mutation p.Y1257C 0.70 deleterious(0) probably_damaging(0.984) TCGA-6A-AB49-01 1 67592935 67592935 A - C1orf141 5'UTR 0.37 TCGA-6A-AB49-01 1 68896790 68896790 G A RPE65 Missense_Mutation p.P470S 0.73 deleterious(0) probably_damaging(0.977) TCGA-6A-AB49-01 1 75606741 75606741 C A LHX8 Silent p.T113T 0.67 TCGA-6A-AB49-01 1 79107279 79107279 C T IFI44L Missense_Mutation p.P437S 0.68 deleterious(0) probably_damaging(0.995) TCGA-6A-AB49-01 1 9034855 9034855 A C CA6 3'Flank 0.75 TCGA-6A-AB49-01 20 2097894 2097894 A T STK35 Missense_Mutation p.Q492L 0.15 tolerated(0.23) benign(0.012) TCGA-6A-AB49-01 20 2442434 2442434 G C SNRPB Missense_Mutation p.P231A 0.11 deleterious_low_confidence(0) unknown(0) TCGA-6A-AB49-01 20 31571728 31571728 C A SUN5 Missense_Mutation p.V338F 0.08 deleterious(0) probably_damaging(0.993) TCGA-6A-AB49-01 20 34022567 34022567 C T GDF5 Missense_Mutation p.V216M 0.09 tolerated(0.15) benign(0.215) TCGA-6A-AB49-01 20 40033325 40033325 C A CHD6 Missense_Mutation p.A2686S 0.06 tolerated_low_confidence(0.53) benign(0.002) TCGA-6A-AB49-01 20 47246135 47246135 C A PREX1 Missense_Mutation p.D1540Y 0.52 deleterious(0) possibly_damaging(0.878) TCGA-6A-AB49-01 20 48156225 48156225 C A PTGIS Silent p.A185A 0.44 TCGA-6A-AB49-01 20 52198300 52198300 C T ZNF217 Missense_Mutation p.G356S 0.16 tolerated(0.23) benign(0.046) TCGA-6A-AB49-01 20 61981588 61981588 G A CHRNA4 Missense_Mutation p.P392L 0.75 tolerated(0.44) probably_damaging(1) TCGA-6A-AB49-01 20 62069978 62069978 C A KCNQ2 Missense_Mutation p.Q341H 0.70 deleterious(0) probably_damaging(0.954) TCGA-6A-AB49-01 20 8862361 8862361 G T PLCB1 Missense_Mutation p.K1172N 0.70 tolerated(0.28) possibly_damaging(0.86) TCGA-6A-AB49-01 21 10862877 10862877 A T IGHV1OR21-1 Missense_Mutation p.Q58L 0.14 deleterious(0) probably_damaging(0.998) TCGA-6A-AB49-01 21 10862878 10862878 G T IGHV1OR21-1 Missense_Mutation p.Q58H 0.14 deleterious(0.01) probably_damaging(0.913) TCGA-6A-AB49-01 21 33684046 33684046 C T MRAP Silent p.L86L 0.36 TCGA-6A-AB49-01 21 45732928 45732928 C T PFKL Silent p.I165I 0.74 TCGA-6A-AB49-01 22 16448999 16448999 G C OR11H1 Missense_Mutation p.S269C 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-6A-AB49-01 22 23165723 23165723 G T IGLV2-8 Silent p.G98G 0.23 TCGA-6A-AB49-01 22 23524091 23524091 C G BCR Missense_Mutation p.S315C 0.64 deleterious_low_confidence(0) possibly_damaging(0.869) TCGA-6A-AB49-01 22 25331383 25331383 G T TMEM211 Missense_Mutation p.H103N 0.39 tolerated(0.42) benign(0.005) TCGA-6A-AB49-01 22 32506059 32506059 C A SLC5A1 Silent p.P618P 0.51 TCGA-6A-AB49-01 22 36623438 36623438 A G APOL2 3'UTR 0.48 TCGA-6A-AB49-01 22 37602795 37602795 C A SSTR3 Nonsense_Mutation p.E350* 0.22 TCGA-6A-AB49-01 22 40757498 40757498 G T ADSL Missense_Mutation p.S290I 0.42 deleterious(0) probably_damaging(1) TCGA-6A-AB49-01 22 41566478 41566478 C T EP300 Missense_Mutation p.P1452L 0.46 probably_damaging(1) TCGA-6A-AB49-01 22 42910225 42910225 A G RRP7A Missense_Mutation p.L215P 0.16 deleterious(0.01) benign(0.411) TCGA-6A-AB49-01 2 125669102 125669102 G A CNTNAP5 Silent p.S1237S 0.28 TCGA-6A-AB49-01 2 1271325 1271325 G T SNTG2 Missense_Mutation p.M422I 0.61 tolerated(0.09) benign(0.027) TCGA-6A-AB49-01 2 136575464 136575464 C G LCT Missense_Mutation p.G385A 0.46 deleterious(0.01) possibly_damaging(0.895) TCGA-6A-AB49-01 2 139428649 139428649 T G NXPH2 Missense_Mutation p.Q213P 0.24 deleterious(0.03) probably_damaging(0.961) TCGA-6A-AB49-01 2 139428650 139428650 G T NXPH2 Missense_Mutation p.Q213K 0.26 tolerated(0.12) possibly_damaging(0.794) TCGA-6A-AB49-01 2 141665574 141665574 C G LRP1B Missense_Mutation p.C1131S 0.33 possibly_damaging(0.845) TCGA-6A-AB49-01 2 141707930 141707930 G C LRP1B Missense_Mutation p.H1004D 0.34 possibly_damaging(0.899) TCGA-6A-AB49-01 2 141819742 141819742 G C LRP1B Missense_Mutation p.P372A 0.40 possibly_damaging(0.539) TCGA-6A-AB49-01 2 149803495 149803495 C A KIF5C Silent p.L224L 0.16 TCGA-6A-AB49-01 2 152475964 152475964 C A NEB Splice_Site p.X3624_splice 0.15 TCGA-6A-AB49-01 2 152499835 152499835 T - NEB Frame_Shift_Del p.G2664Afs*5 0.22 TCGA-6A-AB49-01 2 159481884 159481884 G T PKP4 Missense_Mutation p.Q366H 0.32 deleterious(0.03) possibly_damaging(0.519) TCGA-6A-AB49-01 2 162735795 162735795 C A SLC4A10 Missense_Mutation p.T368N 0.31 deleterious(0) possibly_damaging(0.639) TCGA-6A-AB49-01 2 162821672 162821672 G A SLC4A10 Missense_Mutation p.A1050T 0.33 tolerated(0.24) possibly_damaging(0.725) TCGA-6A-AB49-01 2 163256707 163256707 G C KCNH7 Missense_Mutation p.A800G 0.32 tolerated(0.06) possibly_damaging(0.861) TCGA-6A-AB49-01 2 163302735 163302735 G T KCNH7 Missense_Mutation p.S449R 0.42 tolerated(0.05) benign(0.058) TCGA-6A-AB49-01 2 166514417 166514417 A G CSRNP3 Missense_Mutation p.N99D 0.25 tolerated(0.06) probably_damaging(0.991) TCGA-6A-AB49-01 2 178416711 178416711 C T TTC30B Missense_Mutation p.E261K 0.36 deleterious(0.01) probably_damaging(0.945) TCGA-6A-AB49-01 2 179413088 179413088 G T TTN Missense_Mutation p.R31089S 0.39 TCGA-6A-AB49-01 2 179413089 179413089 G T TTN Missense_Mutation p.F31088L 0.38 TCGA-6A-AB49-01 2 179545884 179545884 T A TTN Nonsense_Mutation p.K11088* 0.17 TCGA-6A-AB49-01 2 179568911 179568911 A G TTN Silent p.Y10062Y 0.37 TCGA-6A-AB49-01 2 179587773 179587773 C A TTN Nonsense_Mutation p.E7321* 0.31 TCGA-6A-AB49-01 2 179614385 179614385 C G TTN Intron 0.26 TCGA-6A-AB49-01 2 179701746 179701746 G A CCDC141 Silent p.S1400S 0.32 TCGA-6A-AB49-01 2 182543265 182543265 G T NEUROD1 Missense_Mutation p.A108D 0.40 deleterious(0) benign(0.114) TCGA-6A-AB49-01 2 183951834 183951834 A T DUSP19 Missense_Mutation p.S114C 0.31 deleterious(0.01) benign(0.005) TCGA-6A-AB49-01 2 183989109 183989109 T A NUP35 5'UTR 0.44 TCGA-6A-AB49-01 2 196922784 196922784 C T DNAH7 Silent p.L24L 0.14 TCGA-6A-AB49-01 2 197521728 197521728 G A CCDC150 Silent p.K148K 0.45 TCGA-6A-AB49-01 2 197711926 197711926 T G PGAP1 Splice_Site p.X651_splice 0.39 TCGA-6A-AB49-01 2 207170854 207170854 T A ZDBF2 Missense_Mutation p.S534R 0.61 deleterious(0.01) possibly_damaging(0.693) TCGA-6A-AB49-01 2 21225747 21225747 G T APOB Missense_Mutation p.H4183N 0.22 benign(0.002) TCGA-6A-AB49-01 2 217124349 217124349 C T MARCH4 Missense_Mutation p.A307T 0.70 deleterious(0) possibly_damaging(0.851) TCGA-6A-AB49-01 2 219647051 219647051 G C CYP27A1 Missense_Mutation p.G49A 0.73 tolerated(0.27) benign(0.054) TCGA-6A-AB49-01 2 220504222 220504222 G T SLC4A3 Missense_Mutation p.K1041N 0.67 deleterious(0.03) probably_damaging(0.983) TCGA-6A-AB49-01 2 234762537 234762537 T A HJURP Missense_Mutation p.D46V 0.35 deleterious(0) probably_damaging(0.998) TCGA-6A-AB49-01 2 234959660 234959660 T C SPP2 Missense_Mutation p.L44P 0.72 deleterious(0) probably_damaging(0.982) TCGA-6A-AB49-01 2 23980663 23980663 C A ATAD2B Nonsense_Mutation p.E1235* 0.59 TCGA-6A-AB49-01 2 25965842 25965842 C A ASXL2 Missense_Mutation p.G1122W 0.24 deleterious(0) probably_damaging(1) TCGA-6A-AB49-01 2 26667095 26667095 A C DRC1 Missense_Mutation p.H345P 0.22 deleterious(0) possibly_damaging(0.5) TCGA-6A-AB49-01 2 29416348 29416348 C T ALK Silent p.L1535L 0.50 TCGA-6A-AB49-01 2 31167724 31167724 C A GALNT14 Missense_Mutation p.R281M 0.26 deleterious(0.01) benign(0.187) TCGA-6A-AB49-01 2 44573501 44573501 T A PREPL Missense_Mutation p.E83V 0.57 tolerated(0.49) benign(0.017) TCGA-6A-AB49-01 2 61610450 61610450 G C USP34 Missense_Mutation p.P259A 0.26 tolerated(0.25) benign(0.332) TCGA-6A-AB49-01 2 71755531 71755531 G T DYSF Missense_Mutation p.M460I 0.47 deleterious(0.02) benign(0.185) TCGA-6A-AB49-01 2 74141817 74141817 A T ACTG2 Missense_Mutation p.E208D 0.21 deleterious_low_confidence(0.03) benign(0.373) TCGA-6A-AB49-01 2 74273984 74273984 G T TET3 Missense_Mutation p.G179C 0.24 tolerated(0.06) possibly_damaging(0.816) TCGA-6A-AB49-01 2 74327594 74327594 A G TET3 Missense_Mutation p.S1092G 0.25 deleterious(0.02) benign(0.102) TCGA-6A-AB49-01 2 74725420 74725420 G T LBX2 Silent p.G73G 0.39 TCGA-6A-AB49-01 2 75107648 75107648 C T HK2 Missense_Mutation p.P508S 0.26 tolerated(1) benign(0.002) TCGA-6A-AB49-01 2 80835403 80835403 C A CTNNA2 Missense_Mutation p.A797E 0.37 deleterious(0) probably_damaging(0.987) TCGA-6A-AB49-01 2 84777113 84777113 C T DNAH6 Nonsense_Mutation p.R473* 0.38 TCGA-6A-AB49-01 2 85875123 85875123 C T USP39 Missense_Mutation p.S545L 0.28 deleterious(0) possibly_damaging(0.842) TCGA-6A-AB49-01 2 89384883 89384883 G T IGKV3-15 Silent p.A45A 0.38 TCGA-6A-AB49-01 2 89544505 89544505 G A IGKV2-30 Missense_Mutation p.S40F 0.43 deleterious(0.01) benign(0.424) TCGA-6A-AB49-01 2 9002818 9002818 T G MBOAT2 Missense_Mutation p.I363L 0.24 tolerated(0.53) benign(0.091) TCGA-6A-AB49-01 2 90154143 90154143 G C IGKV3D-15 Missense_Mutation p.G77A 0.36 deleterious(0.01) benign(0.213) TCGA-6A-AB49-01 2 96795564 96795564 T C ASTL Silent p.R291R 0.31 TCGA-6A-AB49-01 2 97279236 97279236 G A KANSL3 Missense_Mutation p.H262Y 0.43 tolerated(0.09) benign(0.423) TCGA-6A-AB49-01 2 98834412 98834412 A C VWA3B Missense_Mutation p.E647A 0.27 tolerated(0.05) benign(0.199) TCGA-6A-AB49-01 2 99156137 99156137 A T INPP4A Nonsense_Mutation p.R273* 0.44 TCGA-6A-AB49-01 3 113125862 113125862 G C WDR52 Missense_Mutation p.T306S 0.52 deleterious(0.01) possibly_damaging(0.829) TCGA-6A-AB49-01 3 113563349 113563349 G C GRAMD1C Splice_Site p.X10_splice 0.40 TCGA-6A-AB49-01 3 113563350 113563350 G T GRAMD1C Missense_Mutation p.V10L 0.42 deleterious_low_confidence(0.02) benign(0.036) TCGA-6A-AB49-01 3 118621312 118621312 C A IGSF11 3'UTR 0.33 TCGA-6A-AB49-01 3 118621313 118621313 C A IGSF11 3'UTR 0.34 TCGA-6A-AB49-01 3 118865166 118865166 G T C3orf30 Missense_Mutation p.D44Y 0.26 deleterious(0) probably_damaging(0.996) TCGA-6A-AB49-01 3 121228968 121228968 C A POLQ Missense_Mutation p.Q578H 0.44 tolerated(0.05) benign(0.013) TCGA-6A-AB49-01 3 124418812 124418812 G A AC080008.1 5'Flank 0.57 TCGA-6A-AB49-01 3 12790260 12790260 C A TMEM40 Silent p.G35G 0.73 TCGA-6A-AB49-01 3 132948158 132948158 G A TMEM108 Translation_Start_Site p.M1? 0.22 deleterious_low_confidence(0) benign(0.216) TCGA-6A-AB49-01 3 133473412 133473412 C A TF Silent p.G133G 0.26 TCGA-6A-AB49-01 3 138478078 138478078 C A PIK3CB Missense_Mutation p.L36F 0.30 deleterious(0) probably_damaging(1) TCGA-6A-AB49-01 3 142841004 142841004 C G CHST2 Missense_Mutation p.P449R 0.54 tolerated(0.11) benign(0.057) TCGA-6A-AB49-01 3 146173189 146173189 C A PLSCR2 Missense_Mutation p.R126M 0.20 tolerated(0.09) possibly_damaging(0.596) TCGA-6A-AB49-01 3 160225933 160225933 T A KPNA4 Missense_Mutation p.E445V 0.56 tolerated(0.06) benign(0.04) TCGA-6A-AB49-01 3 172064171 172064171 C G FNDC3B Missense_Mutation p.Q769E 0.25 deleterious(0.01) benign(0.138) TCGA-6A-AB49-01 3 183495361 183495361 A T YEATS2 Missense_Mutation p.Q870L 0.24 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-6A-AB49-01 3 183996034 183996034 G C ECE2 Missense_Mutation p.R346T 0.20 tolerated(0.12) probably_damaging(1) TCGA-6A-AB49-01 3 184429291 184429291 T C MAGEF1 Missense_Mutation p.I107V 0.58 tolerated(0.28) benign(0.002) TCGA-6A-AB49-01 3 185434455 185434455 C G C3orf65 Missense_Mutation p.I96M 0.59 deleterious_low_confidence(0.03) possibly_damaging(0.506) TCGA-6A-AB49-01 3 188242501 188242501 G C LPP Missense_Mutation p.A119P 0.24 deleterious(0) probably_damaging(1) TCGA-6A-AB49-01 3 20019841 20019841 A G RAB5A Missense_Mutation p.M160V 0.28 deleterious(0.02) benign(0.383) TCGA-6A-AB49-01 3 32933190 32933190 G C TRIM71 Missense_Mutation p.G832R 0.63 deleterious(0) probably_damaging(0.997) TCGA-6A-AB49-01 3 33134965 33134965 C G TMPPE Silent p.T241T 0.68 TCGA-6A-AB49-01 3 38640490 38640490 G T SCN5A Missense_Mutation p.P648T 0.60 tolerated(0.65) benign(0.133) TCGA-6A-AB49-01 3 48699299 48699299 C A CELSR3 Missense_Mutation p.A257S 0.57 tolerated_low_confidence(0.06) benign(0.021) TCGA-6A-AB49-01 3 50131175 50131175 G T RBM5 Missense_Mutation p.S69I 0.62 deleterious(0.01) benign(0.403) TCGA-6A-AB49-01 3 77595509 77595509 C A ROBO2 Silent p.R335R 0.71 TCGA-6A-AB49-01 3 99979897 99979897 C A TBC1D23 Missense_Mutation p.T12K 0.25 tolerated_low_confidence(0.06) benign(0.002) TCGA-6A-AB49-01 4 108816847 108816847 C T SGMS2 Silent p.S46S 0.53 TCGA-6A-AB49-01 4 123304958 123304958 T C ADAD1 Silent p.N122N 0.62 TCGA-6A-AB49-01 4 152056278 152056278 T A SH3D19 Missense_Mutation p.I555F 0.59 deleterious(0.03) possibly_damaging(0.602) TCGA-6A-AB49-01 4 153895980 153895980 G T FHDC1 Nonsense_Mutation p.E513* 0.55 TCGA-6A-AB49-01 4 173232770 173232770 G A GALNTL6 Missense_Mutation p.G85S 0.75 deleterious(0) probably_damaging(1) TCGA-6A-AB49-01 4 183635256 183635256 G T TENM3 Silent p.L746L 0.46 TCGA-6A-AB49-01 4 187201683 187201683 G T F11 Missense_Mutation p.G362W 0.65 deleterious(0) probably_damaging(0.999) TCGA-6A-AB49-01 4 189063636 189063636 G T TRIML1 Missense_Mutation p.E245D 0.70 tolerated(0.05) possibly_damaging(0.546) TCGA-6A-AB49-01 4 27019550 27019550 G T STIM2 Silent p.A577A 0.30 TCGA-6A-AB49-01 4 31144307 31144307 A G PCDH7 Missense_Mutation p.R1202G 0.28 deleterious(0.02) benign(0.21) TCGA-6A-AB49-01 4 3124658 3124659 AA - HTT Frame_Shift_Del p.K440Rfs*14 0.13 TCGA-6A-AB49-01 4 39460107 39460107 C A RPL9 5'UTR 0.37 TCGA-6A-AB49-01 4 39460108 39460108 C A RPL9 5'UTR 0.37 TCGA-6A-AB49-01 4 47912944 47912944 A T NFXL1 Silent p.V101V 0.30 TCGA-6A-AB49-01 4 55594178 55594178 G C KIT Silent p.P627P 0.43 TCGA-6A-AB49-01 4 57219568 57219568 A C AASDH Splice_Site p.X526_splice 0.44 TCGA-6A-AB49-01 4 5754670 5754670 C T EVC Silent p.H402H 0.31 TCGA-6A-AB49-01 4 5803811 5803811 G T EVC Missense_Mutation p.K813N 0.16 deleterious(0.03) possibly_damaging(0.75) TCGA-6A-AB49-01 4 66231773 66231773 T C EPHA5 Missense_Mutation p.K643E 0.71 tolerated(0.19) benign(0.182) TCGA-6A-AB49-01 4 7666128 7666128 T A SORCS2 Missense_Mutation p.L334Q 0.16 tolerated(0.15) benign(0.275) TCGA-6A-AB49-01 5 102342568 102342568 C A PAM Missense_Mutation p.P623T 0.61 deleterious(0) probably_damaging(0.989) TCGA-6A-AB49-01 5 11397197 11397197 T A CTNND2 Silent p.S186S 0.84 TCGA-6A-AB49-01 5 114548265 114548265 T A PGGT1B Missense_Mutation p.Y323F 0.77 deleterious(0) probably_damaging(1) TCGA-6A-AB49-01 5 1212572 1212572 C T SLC6A19 Silent p.T212T 0.83 TCGA-6A-AB49-01 5 122724131 122724131 T C CEP120 Missense_Mutation p.I475M 0.72 tolerated(0.27) benign(0.004) TCGA-6A-AB49-01 5 140347942 140347942 C T PCDHAC2 Missense_Mutation p.L531F 0.35 deleterious(0.01) possibly_damaging(0.616) TCGA-6A-AB49-01 5 162917399 162917399 G A HMMR Missense_Mutation p.V656I 0.31 tolerated(0.17) benign(0.346) TCGA-6A-AB49-01 5 167896036 167896036 A G WWC1 3'UTR 0.76 TCGA-6A-AB49-01 5 179263664 179263664 A T SQSTM1 3'UTR 0.83 TCGA-6A-AB49-01 5 36105249 36105249 C G LMBRD2 Missense_Mutation p.E650Q 0.36 deleterious(0.04) possibly_damaging(0.764) TCGA-6A-AB49-01 5 76129109 76129109 G C F2RL1 Missense_Mutation p.C226S 0.69 deleterious(0) probably_damaging(1) TCGA-6A-AB49-01 5 7866862 7866862 G C FASTKD3 Silent p.P445P 0.50 TCGA-6A-AB49-01 5 79751594 79751594 G C ZFYVE16 Splice_Site p.X1230_splice 0.54 TCGA-6A-AB49-01 5 86676346 86676346 G A RASA1 Missense_Mutation p.G875E 0.67 tolerated(0.08) probably_damaging(1) TCGA-6A-AB49-01 6 100054959 100054959 T G PRDM13 Missense_Mutation p.C17G 0.35 deleterious(0.03) benign(0.166) TCGA-6A-AB49-01 6 102503251 102503251 A G GRIK2 Silent p.Q786Q 0.25 TCGA-6A-AB49-01 6 111732738 111732738 C A REV3L Nonsense_Mutation p.E117* 0.22 TCGA-6A-AB49-01 6 117686263 117686263 C A ROS1 Missense_Mutation p.K1026N 0.28 deleterious(0.03) probably_damaging(0.953) TCGA-6A-AB49-01 6 128134344 128134344 A G THEMIS Missense_Mutation p.L481S 0.51 deleterious(0) probably_damaging(0.994) TCGA-6A-AB49-01 6 129634182 129634182 C G LAMA2 Silent p.T1117T 0.25 TCGA-6A-AB49-01 6 130762799 130762799 C A TMEM200A Missense_Mutation p.A411E 0.29 tolerated(0.58) benign(0.046) TCGA-6A-AB49-01 6 132859942 132859942 G T TAAR9 Missense_Mutation p.A172S 0.33 tolerated(0.07) benign(0.025) TCGA-6A-AB49-01 6 132891797 132891797 G T TAAR6 Missense_Mutation p.V113L 0.29 tolerated(0.24) benign(0.012) TCGA-6A-AB49-01 6 139186190 139186190 G A ECT2L Missense_Mutation p.C450Y 0.25 tolerated(0.34) benign(0.05) TCGA-6A-AB49-01 6 144744744 144744744 G T UTRN Missense_Mutation p.Q98H 0.16 deleterious(0.01) possibly_damaging(0.782) TCGA-6A-AB49-01 6 146350765 146350765 G A GRM1 Missense_Mutation p.V38M 0.35 deleterious(0) probably_damaging(0.942) TCGA-6A-AB49-01 6 152774813 152774813 G - SYNE1 Frame_Shift_Del p.L979* 0.31 TCGA-6A-AB49-01 6 157469854 157469854 A G ARID1B Missense_Mutation p.H883R 0.30 probably_damaging(0.996) TCGA-6A-AB49-01 6 157495991 157495991 G A ARID1B Intron 0.30 TCGA-6A-AB49-01 6 158449853 158449853 G T SYNJ2 Missense_Mutation p.A94S 0.33 tolerated(0.85) benign(0.241) TCGA-6A-AB49-01 6 24475398 24475398 C G GPLD1 Missense_Mutation p.S131T 0.66 tolerated(0.17) possibly_damaging(0.582) TCGA-6A-AB49-01 6 26217628 26217628 G C HIST1H2AE 3'UTR 0.15 TCGA-6A-AB49-01 6 28120887 28120887 A G ZKSCAN8 Missense_Mutation p.T277A 0.15 tolerated(0.62) benign(0) TCGA-6A-AB49-01 6 29323207 29323207 T A OR5V1 Missense_Mutation p.I256F 0.32 deleterious(0.04) probably_damaging(0.978) TCGA-6A-AB49-01 6 29429912 29429912 G T OR2H1 Silent p.V122V 0.69 TCGA-6A-AB49-01 6 30862395 30862395 C T DDR1 Missense_Mutation p.P487L 0.30 tolerated(0.16) possibly_damaging(0.543) TCGA-6A-AB49-01 6 31711797 31711797 C G MSH5 Missense_Mutation p.L178V 0.17 tolerated(0.2) benign(0.343) TCGA-6A-AB49-01 6 32023772 32023772 C A TNXB Missense_Mutation p.G2775W 0.19 probably_damaging(1) TCGA-6A-AB49-01 6 33543199 33543199 G A BAK1 Missense_Mutation p.R76W 0.11 deleterious(0) probably_damaging(0.986) TCGA-6A-AB49-01 6 4087894 4087894 G T C6orf201 Nonsense_Mutation p.E7* 0.15 TCGA-6A-AB49-01 6 42932083 42932083 G A PEX6 Missense_Mutation p.A978V 0.30 deleterious(0.02) probably_damaging(0.937) TCGA-6A-AB49-01 6 43581407 43581407 C G POLH Missense_Mutation p.L419V 0.32 tolerated(0.16) benign(0.284) TCGA-6A-AB49-01 6 47681877 47681877 G T GPR115 Missense_Mutation p.G299V 0.11 deleterious(0) probably_damaging(1) TCGA-6A-AB49-01 6 50810936 50810936 T C TFAP2B Missense_Mutation p.F405S 0.20 deleterious(0) probably_damaging(0.999) TCGA-6A-AB49-01 6 50810937 50810937 C T TFAP2B Silent p.F405F 0.19 TCGA-6A-AB49-01 6 52617726 52617726 G A GSTA2 Missense_Mutation p.P114S 0.53 tolerated(0.08) benign(0.027) TCGA-6A-AB49-01 6 55039396 55039396 C A HCRTR2 Missense_Mutation p.T4N 0.22 tolerated_low_confidence(0.19) benign(0.021) TCGA-6A-AB49-01 6 57033241 57033241 A T ZNF451 Missense_Mutation p.I1054F 0.13 deleterious_low_confidence(0) possibly_damaging(0.513) TCGA-6A-AB49-01 6 66115241 66115241 T - EYS Frame_Shift_Del p.A295Qfs*44 0.28 TCGA-6A-AB49-01 6 70916962 70916962 G T COL19A1 Missense_Mutation p.R1138L 0.27 deleterious_low_confidence(0.04) benign(0.35) TCGA-6A-AB49-01 6 90604633 90604633 T A GJA10 Missense_Mutation p.L149Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-6A-AB49-01 7 100549863 100549863 G A MUC3A Silent p.T148T 0.21 TCGA-6A-AB49-01 7 100679108 100679108 G T MUC17 Nonsense_Mutation p.E1471* 0.43 TCGA-6A-AB49-01 7 100806369 100806369 C A VGF Missense_Mutation p.A586S 0.41 tolerated_low_confidence(0.14) unknown(0) TCGA-6A-AB49-01 7 101845120 101845120 G T CUX1 Missense_Mutation p.G859V 0.38 tolerated(0.05) unknown(0) TCGA-6A-AB49-01 7 103230196 103230196 C T RELN Nonsense_Mutation p.W1331* 0.18 TCGA-6A-AB49-01 7 106508526 106508526 G T PIK3CG Nonsense_Mutation p.E174* 0.43 TCGA-6A-AB49-01 7 107399234 107399234 G T CBLL1 Missense_Mutation p.G363C 0.42 deleterious(0.01) possibly_damaging(0.864) TCGA-6A-AB49-01 7 107704205 107704205 C A LAMB4 Splice_Site p.X1021_splice 0.39 TCGA-6A-AB49-01 7 11581215 11581215 T C THSD7A Silent p.G551G 0.38 TCGA-6A-AB49-01 7 11675975 11675975 G T THSD7A Silent p.S268S 0.31 TCGA-6A-AB49-01 7 117282592 117282592 C A CFTR Missense_Mutation p.S1273Y 0.43 deleterious(0.01) probably_damaging(0.953) TCGA-6A-AB49-01 7 120911455 120911455 C A CPED1 Missense_Mutation p.Q947K 0.35 deleterious(0.01) benign(0.334) TCGA-6A-AB49-01 7 121651777 121651777 G T PTPRZ1 Missense_Mutation p.G893C 0.35 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-6A-AB49-01 7 123302659 123302659 C A LMOD2 Missense_Mutation p.P340Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-6A-AB49-01 7 124404940 124404940 C A GPR37 Missense_Mutation p.A31S 0.24 deleterious_low_confidence(0.03) benign(0.156) TCGA-6A-AB49-01 7 124404985 124404985 G A GPR37 Missense_Mutation p.L16F 0.25 deleterious_low_confidence(0) possibly_damaging(0.86) TCGA-6A-AB49-01 7 124404986 124404986 C A GPR37 Silent p.L15L 0.25 TCGA-6A-AB49-01 7 127894833 127894833 C A LEP 3'UTR 0.25 TCGA-6A-AB49-01 7 130357695 130357695 G C TSGA13 Missense_Mutation p.P137A 0.47 tolerated(0.11) possibly_damaging(0.728) TCGA-6A-AB49-01 7 137761185 137761185 G C AKR1D1 5'Flank 0.33 TCGA-6A-AB49-01 7 138433989 138433989 C A ATP6V0A4 Missense_Mutation p.R368M 0.36 deleterious(0.01) probably_damaging(1) TCGA-6A-AB49-01 7 142180971 142180971 G T TRBV6-5 5'UTR 0.27 TCGA-6A-AB49-01 7 144364910 144364910 G C TPK1 Intron 0.23 TCGA-6A-AB49-01 7 148802513 148802513 T A ZNF425 Missense_Mutation p.E150D 0.46 tolerated(0.53) benign(0.001) TCGA-6A-AB49-01 7 151065903 151065903 C G NUB1 Missense_Mutation p.A417G 0.40 deleterious(0.01) possibly_damaging(0.874) TCGA-6A-AB49-01 7 151181836 151181836 T A RHEB Missense_Mutation p.D60V 0.33 deleterious(0) probably_damaging(1) TCGA-6A-AB49-01 7 151927084 151927084 C A KMT2C Missense_Mutation p.G967V 0.10 probably_damaging(1) TCGA-6A-AB49-01 7 151927085 151927085 C A KMT2C Missense_Mutation p.G967C 0.09 probably_damaging(1) TCGA-6A-AB49-01 7 152345929 152345929 C A XRCC2 Missense_Mutation p.R214L 0.35 tolerated(0.38) benign(0) TCGA-6A-AB49-01 7 154585882 154585882 C A DPP6 Silent p.L410L 0.35 TCGA-6A-AB49-01 7 154767682 154767682 C G PAXIP1 Missense_Mutation p.W266C 0.35 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-6A-AB49-01 7 18067156 18067156 G T PRPS1L1 Silent p.R84R 0.34 TCGA-6A-AB49-01 7 26224530 26224530 T C NFE2L3 Silent p.D404D 0.17 TCGA-6A-AB49-01 7 33217089 33217089 G T BBS9 Splice_Site p.X110_splice 0.46 TCGA-6A-AB49-01 7 47971567 47971567 C A PKD1L1 Missense_Mutation p.G162V 0.42 deleterious(0.05) benign(0.026) TCGA-6A-AB49-01 7 47971568 47971568 C A PKD1L1 Missense_Mutation p.G162W 0.41 deleterious(0.01) possibly_damaging(0.624) TCGA-6A-AB49-01 7 51258666 51258666 T A COBL Missense_Mutation p.E189V 0.39 deleterious(0) probably_damaging(0.993) TCGA-6A-AB49-01 7 56082818 56082818 A C PSPH Silent p.G156G 0.45 TCGA-6A-AB49-01 7 62752659 62752659 T A ZNF733P RNA 0.16 TCGA-6A-AB49-01 7 7557462 7557462 C T COL28A1 Missense_Mutation p.A274T 0.31 tolerated(0.07) benign(0.038) TCGA-6A-AB49-01 7 76619598 76619598 C T UPK3B Intron 0.17 TCGA-6A-AB49-01 7 81601145 81601145 C T CACNA2D1 Missense_Mutation p.A697T 0.35 tolerated(0.89) probably_damaging(0.999) TCGA-6A-AB49-01 7 86394429 86394429 T G GRM3 5'UTR 0.45 TCGA-6A-AB49-01 7 87047934 87047934 G T ABCB4 Missense_Mutation p.D799E 0.41 tolerated(0.41) benign(0.162) TCGA-6A-AB49-01 7 87774782 87774782 A G ADAM22 Missense_Mutation p.D482G 0.38 tolerated(1) benign(0.003) TCGA-6A-AB49-01 7 87912024 87912024 G A STEAP4 Missense_Mutation p.L306F 0.46 tolerated(0.07) benign(0.098) TCGA-6A-AB49-01 7 96653735 96653735 G C DLX5 Silent p.G67G 0.30 TCGA-6A-AB49-01 7 98531018 98531018 A G TRRAP Missense_Mutation p.Y1336C 0.32 possibly_damaging(0.865) TCGA-6A-AB49-01 8 108264191 108264191 A G ANGPT1 Silent p.T463T 0.32 TCGA-6A-AB49-01 8 110510955 110510955 G - PKHD1L1 Frame_Shift_Del p.G3595Efs*3 0.37 TCGA-6A-AB49-01 8 116599575 116599575 C G TRPS1 Missense_Mutation p.E785Q 0.32 deleterious_low_confidence(0.01) benign(0.176) TCGA-6A-AB49-01 8 125072926 125072926 C G FER1L6 Missense_Mutation p.S1041R 0.29 deleterious(0.02) benign(0.261) TCGA-6A-AB49-01 8 133899009 133899009 A T TG Silent p.P464P 0.36 TCGA-6A-AB49-01 8 145697414 145697414 G C KIFC2 Missense_Mutation p.K490N 0.11 deleterious(0) probably_damaging(1) TCGA-6A-AB49-01 8 21560448 21560448 C A GFRA2 Missense_Mutation p.V363L 0.50 tolerated(0.52) benign(0) TCGA-6A-AB49-01 8 26628175 26628175 A C ADRA1A Missense_Mutation p.F298V 0.32 tolerated(0.06) possibly_damaging(0.516) TCGA-6A-AB49-01 8 33451259 33451259 C A DUSP26 Missense_Mutation p.M76I 0.56 tolerated(0.48) benign(0.001) TCGA-6A-AB49-01 8 39114858 39114858 A G ADAM32 Missense_Mutation p.S720G 0.36 tolerated(0.13) benign(0.01) TCGA-6A-AB49-01 8 42924803 42924803 G A FNTA Splice_Site p.X169_splice 0.46 TCGA-6A-AB49-01 8 48761776 48761776 C A PRKDC Nonsense_Mutation p.G2406* 0.34 TCGA-6A-AB49-01 8 54142010 54142010 G C OPRK1 Nonsense_Mutation p.Y330* 0.47 TCGA-6A-AB49-01 8 57214011 57214011 C A SDR16C5 3'UTR 0.34 TCGA-6A-AB49-01 8 59555558 59555558 C G NSMAF Missense_Mutation p.G76A 0.37 tolerated(0.8) benign(0.018) TCGA-6A-AB49-01 8 67066333 67066333 G T TRIM55 Missense_Mutation p.V430F 0.29 tolerated_low_confidence(0.06) benign(0.11) TCGA-6A-AB49-01 8 68113895 68113895 T G ARFGEF1 Intron 0.27 TCGA-6A-AB49-01 8 88885519 88885519 G T DCAF4L2 Silent p.V227V 0.38 TCGA-6A-AB49-01 8 93004061 93004061 C T RUNX1T1 Missense_Mutation p.R277Q 0.36 deleterious(0) possibly_damaging(0.557) TCGA-6A-AB49-01 9 113170557 113170557 G C SVEP1 Silent p.P2441P 0.84 TCGA-6A-AB49-01 9 130570879 130570879 G T FPGS Missense_Mutation p.G289W 0.50 deleterious(0.01) possibly_damaging(0.831) TCGA-6A-AB49-01 9 139401270 139401270 C - NOTCH1 Frame_Shift_Del p.D1267Mfs*178 0.56 TCGA-6A-AB49-01 9 16419152 16419152 G T BNC2 Missense_Mutation p.S1045R 0.61 deleterious(0.01) probably_damaging(0.999) TCGA-6A-AB49-01 9 32634799 32634799 C A TAF1L Missense_Mutation p.R260L 0.62 deleterious(0.03) probably_damaging(0.998) TCGA-6A-AB49-01 9 5921463 5921463 G A KIAA2026 Silent p.A1511A 0.77 TCGA-6A-AB49-01 9 8499773 8499773 C G PTPRD Missense_Mutation p.W732C 0.70 deleterious(0) probably_damaging(0.999) TCGA-6A-AB49-01 X 101395817 101395817 G A TCEAL6 Missense_Mutation p.H163Y 0.66 tolerated(0.38) benign(0.317) TCGA-6A-AB49-01 X 101395940 101395940 G A TCEAL6 Missense_Mutation p.P122S 0.64 tolerated(0.05) possibly_damaging(0.474) TCGA-6A-AB49-01 X 101912643 101912643 A G GPRASP1 Missense_Mutation p.T1268A 0.70 deleterious(0.02) benign(0.176) TCGA-6A-AB49-01 X 102864479 102864479 C T TCEAL3 Missense_Mutation p.H163Y 0.12 tolerated(0.83) probably_damaging(0.98) TCGA-6A-AB49-01 X 109922652 109922652 G T CHRDL1 Silent p.G386G 0.62 TCGA-6A-AB49-01 X 119005203 119005203 T C RNF113A Missense_Mutation p.E125G 0.69 deleterious(0.02) benign(0.043) TCGA-6A-AB49-01 X 128922538 128922538 C T SASH3 Silent p.A95A 0.86 TCGA-6A-AB49-01 X 153999072 153999072 A C DKC1 Silent p.P318P 0.61 TCGA-6A-AB49-01 X 1755450 1755451 CC A ASMT Frame_Shift_Del p.P303Kfs*7 0.37 TCGA-6A-AB49-01 X 36091312 36091312 G C CHDC2 Missense_Mutation p.D83H 0.69 deleterious(0.01) benign(0.029) TCGA-6A-AB49-01 X 37029157 37029157 G T FAM47C Nonsense_Mutation p.E892* 0.65 TCGA-6A-AB49-01 X 54800605 54800605 T C ITIH6 Missense_Mutation p.Y271C 0.69 deleterious(0) probably_damaging(0.991) TCGA-6A-AB49-01 X 91090519 91090519 G A PCDH11X Missense_Mutation p.G6R 0.61 deleterious(0.03) benign(0.197) TCGA-70-6722-01 10 102782143 102782143 C A PDZD7 Splice_Site p.X181_splice 0.30 TCGA-70-6722-01 10 116335269 116335269 G A ABLIM1 Missense_Mutation p.R157C 0.14 deleterious(0) benign(0.036) TCGA-70-6722-01 10 135053746 135053746 G T VENTX Missense_Mutation p.G238V 0.25 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-70-6722-01 10 135095829 135095829 C G TUBGCP2 Missense_Mutation p.M797I 0.24 tolerated(0.24) benign(0.005) TCGA-70-6722-01 10 26559583 26559583 C A GAD2 Missense_Mutation p.F330L 0.14 tolerated(0.29) probably_damaging(0.994) TCGA-70-6722-01 10 35894431 35894431 G T GJD4 5'UTR 0.15 TCGA-70-6722-01 10 38344909 38344909 C A ZNF33A Nonsense_Mutation p.Y619* 0.10 TCGA-70-6722-01 10 54031115 54031115 G T PRKG1 Missense_Mutation p.Q393H 0.23 tolerated(0.1) benign(0.373) TCGA-70-6722-01 10 68139060 68139060 G T CTNNA3 Missense_Mutation p.Q528K 0.11 tolerated(1) unknown(0) TCGA-70-6722-01 10 7683937 7683937 C T ITIH5 Silent p.E84E 0.15 TCGA-70-6722-01 11 102665947 102665947 G T MMP1 Missense_Mutation p.A286D 0.12 deleterious(0) probably_damaging(0.988) TCGA-70-6722-01 11 123676798 123676798 T G OR6M1 Missense_Mutation p.E87A 0.13 tolerated(0.24) benign(0) TCGA-70-6722-01 11 13397284 13397284 A G ARNTL Missense_Mutation p.I433V 0.22 deleterious(0) benign(0.35) TCGA-70-6722-01 11 1950353 1950353 C A TNNT3 Missense_Mutation p.T29N 0.23 tolerated(0.46) unknown(0) TCGA-70-6722-01 11 2426127 2426127 G A TRPM5 3'UTR 0.13 TCGA-70-6722-01 11 55861580 55861580 C A OR8I2 Nonsense_Mutation p.S266* 0.24 TCGA-70-6722-01 11 56143455 56143455 C A OR8U1 Missense_Mutation p.A119D 0.11 deleterious(0) probably_damaging(0.999) TCGA-70-6722-01 11 56143456 56143456 C A OR8U1 Silent p.A119A 0.11 TCGA-70-6722-01 11 57413813 57413813 T A YPEL4 Missense_Mutation p.D84V 0.07 deleterious(0) probably_damaging(0.998) TCGA-70-6722-01 11 57799282 57799282 G C OR6Q1 Silent p.T286T 0.11 TCGA-70-6722-01 11 62376917 62376917 G A EML3 Missense_Mutation p.R223C 0.16 deleterious(0) probably_damaging(1) TCGA-70-6722-01 11 65268390 65268392 TTT - MALAT1 RNA 0.12 TCGA-70-6722-01 11 68675734 68675734 G C IGHMBP2 Missense_Mutation p.L126F 0.14 tolerated(0.07) benign(0.127) TCGA-70-6722-01 11 68705714 68705714 G T IGHMBP2 Missense_Mutation p.K892N 0.27 deleterious(0.04) probably_damaging(0.917) TCGA-70-6722-01 11 72946147 72946147 C T P2RY2 Missense_Mutation p.R315C 0.16 tolerated(0.05) possibly_damaging(0.899) TCGA-70-6722-01 11 73007682 73007682 G T P2RY6 Missense_Mutation p.G40V 0.28 deleterious(0) probably_damaging(1) TCGA-70-6722-01 11 73681140 73681140 G T DNAJB13 Missense_Mutation p.R311L 0.17 deleterious(0.05) benign(0.162) TCGA-70-6722-01 11 99715950 99715950 C A CNTN5 Missense_Mutation p.T178N 0.11 tolerated(0.09) benign(0.112) TCGA-70-6722-01 12 10568344 10568344 G T KLRC3 Missense_Mutation p.R213S 0.47 tolerated(0.52) benign(0.013) TCGA-70-6722-01 12 11035058 11035059 CT A PRH1 Frame_Shift_Del p.Q92Hfs*84 0.09 TCGA-70-6722-01 12 118599636 118599636 C T TAOK3 Missense_Mutation p.R699K 0.17 tolerated(1) benign(0.007) TCGA-70-6722-01 12 119978478 119978478 C A CCDC60 Missense_Mutation p.S537R 0.25 deleterious(0.01) benign(0.093) TCGA-70-6722-01 12 126068503 126068503 C A TMEM132B Missense_Mutation p.S462Y 0.26 tolerated(0.32) benign(0.299) TCGA-70-6722-01 12 2693738 2693738 C A CACNA1C Missense_Mutation p.A765D 0.38 deleterious(0.03) benign(0.245) TCGA-70-6722-01 12 41967075 41967075 C T PDZRN4 Missense_Mutation p.P832S 0.26 tolerated(0.28) probably_damaging(0.998) TCGA-70-6722-01 12 44770376 44770376 A G TMEM117 Splice_Site p.X257_splice 0.16 TCGA-70-6722-01 12 44770378 44770378 G T TMEM117 Missense_Mutation p.D257Y 0.17 deleterious(0) probably_damaging(0.998) TCGA-70-6722-01 12 46243515 46243515 G T ARID2 Missense_Mutation p.R623L 0.24 tolerated(0.24) possibly_damaging(0.819) TCGA-70-6722-01 12 49310768 49310768 C - CCDC65 Frame_Shift_Del p.Q163Nfs*21 0.24 TCGA-70-6722-01 12 49441822 49441822 G A KMT2D Missense_Mutation p.R1388W 0.14 probably_damaging(0.999) TCGA-70-6722-01 12 49957227 49957227 C A MCRS1 Silent p.V233V 0.17 TCGA-70-6722-01 12 56815268 56815268 C A TIMELESS Missense_Mutation p.G912V 0.10 deleterious(0) possibly_damaging(0.903) TCGA-70-6722-01 12 57969023 57969023 G T KIF5A Nonsense_Mutation p.E625* 0.27 TCGA-70-6722-01 12 75444822 75444822 C A KCNC2 Silent p.V321V 0.21 TCGA-70-6722-01 12 7805379 7805379 G A APOBEC1 Missense_Mutation p.R33C 0.15 tolerated(0.07) benign(0.141) TCGA-70-6722-01 12 78511901 78511901 G T NAV3 Missense_Mutation p.G955V 0.28 tolerated(0.58) benign(0.001) TCGA-70-6722-01 12 8327889 8327889 G T ZNF705A Nonsense_Mutation p.G69* 0.10 TCGA-70-6722-01 12 95535176 95535176 C G FGD6 Missense_Mutation p.R942T 0.08 deleterious(0) probably_damaging(0.978) TCGA-70-6722-01 13 32915254 32915254 T C BRCA2 Silent p.F2254F 0.29 TCGA-70-6722-01 14 102471151 102471151 G A DYNC1H1 Nonsense_Mutation p.W1701* 0.09 TCGA-70-6722-01 14 104638965 104638965 G T KIF26A Silent p.G460G 0.20 TCGA-70-6722-01 14 20612691 20612691 C G OR4N5 Missense_Mutation p.P266R 0.22 deleterious(0.01) benign(0.344) TCGA-70-6722-01 14 21894357 21894357 G A CHD8 Missense_Mutation p.S549L 0.26 deleterious(0.02) probably_damaging(0.977) TCGA-70-6722-01 14 24901069 24901069 A C KHNYN Missense_Mutation p.Q201P 0.22 tolerated(0.11) possibly_damaging(0.447) TCGA-70-6722-01 14 57114058 57114058 G A TMEM260 Missense_Mutation p.R656K 0.13 tolerated(0.89) benign(0.006) TCGA-70-6722-01 14 62187261 62187261 A G HIF1A Missense_Mutation p.Y90C 0.19 deleterious(0) probably_damaging(0.992) TCGA-70-6722-01 14 67940583 67940583 C T TMEM229B Missense_Mutation p.G20S 0.36 deleterious(0) probably_damaging(1) TCGA-70-6722-01 14 86089392 86089392 G T FLRT2 Missense_Mutation p.A512S 0.29 tolerated(0.06) possibly_damaging(0.493) TCGA-70-6722-01 14 91059951 91059951 C A TTC7B Silent p.S662S 0.33 TCGA-70-6722-01 15 23445400 23445400 T A AC100757.1 3'Flank 0.17 TCGA-70-6722-01 15 24921095 24921095 C A NPAP1 Silent p.P27P 0.19 TCGA-70-6722-01 15 24921096 24921096 C A NPAP1 Missense_Mutation p.L28M 0.19 tolerated_low_confidence(0.18) possibly_damaging(0.82) TCGA-70-6722-01 15 43896213 43896213 T A STRC Silent p.P1452P 0.24 TCGA-70-6722-01 15 52353666 52353666 G T MAPK6 Nonsense_Mutation p.E346* 0.36 TCGA-70-6722-01 16 1254227 1254227 G C CACNA1H Missense_Mutation p.W740C 0.21 deleterious(0.01) benign(0) TCGA-70-6722-01 16 19741816 19741816 G T IQCK Silent p.T82T 0.32 TCGA-70-6722-01 16 20492174 20492174 T G ACSM2A Missense_Mutation p.N480K 0.20 deleterious(0) possibly_damaging(0.649) TCGA-70-6722-01 16 22134943 22134943 A T VWA3A Missense_Mutation p.S483C 0.18 deleterious(0.02) possibly_damaging(0.571) TCGA-70-6722-01 16 2353971 2353971 A G ABCA3 Missense_Mutation p.M489T 0.20 tolerated(0.48) benign(0) TCGA-70-6722-01 16 23703384 23703384 C G ERN2 Missense_Mutation p.G807A 0.29 tolerated(0.17) benign(0.001) TCGA-70-6722-01 16 48249217 48249217 G A ABCC11 Silent p.H330H 0.26 TCGA-70-6722-01 16 48304001 48304001 G T LONP2 Missense_Mutation p.V353L 0.25 deleterious(0.03) probably_damaging(0.996) TCGA-70-6722-01 16 49764751 49764751 C A ZNF423 Missense_Mutation p.D70Y 0.26 deleterious(0) probably_damaging(0.992) TCGA-70-6722-01 16 50745745 50745745 C A NOD2 Silent p.A641A 0.23 TCGA-70-6722-01 16 55579725 55579725 G A LPCAT2 Missense_Mutation p.A311T 0.25 deleterious(0) probably_damaging(0.959) TCGA-70-6722-01 16 61851554 61851554 C A CDH8 Missense_Mutation p.R369M 0.19 tolerated(0.15) benign(0.001) TCGA-70-6722-01 16 61851571 61851571 G T CDH8 Missense_Mutation p.D363E 0.11 tolerated(0.12) benign(0.002) TCGA-70-6722-01 16 67289690 67289690 C T SLC9A5 Silent p.A256A 0.32 TCGA-70-6722-01 16 68597569 68597569 T C ZFP90 Silent p.H293H 0.15 TCGA-70-6722-01 16 68598059 68598059 G T ZFP90 Nonsense_Mutation p.E457* 0.23 TCGA-70-6722-01 16 71318172 71318173 - A CMTR2 Frame_Shift_Ins p.S551Ffs*2 0.16 TCGA-70-6722-01 16 7568315 7568315 T C RBFOX1 Missense_Mutation p.L85P 0.16 deleterious(0.03) possibly_damaging(0.596) TCGA-70-6722-01 16 76501369 76501369 C A CNTNAP4 Missense_Mutation p.S462Y 0.17 tolerated(0.06) benign(0.212) TCGA-70-6722-01 16 84600352 84600352 C G COTL1 3'UTR 0.14 TCGA-70-6722-01 17 10297598 10297598 C A MYH8 Missense_Mutation p.A1712S 0.30 tolerated(0.1) benign(0.053) TCGA-70-6722-01 17 10443973 10443973 C A MYH2 Missense_Mutation p.V316F 0.29 deleterious(0) benign(0.128) TCGA-70-6722-01 17 11837356 11837356 C A DNAH9 Missense_Mutation p.P4153T 0.28 probably_damaging(0.999) TCGA-70-6722-01 17 26708234 26708234 G T SARM1 Silent p.A127A 0.16 TCGA-70-6722-01 17 27577319 27577320 - T CRYBA1 Splice_Site p.X72_splice 0.19 TCGA-70-6722-01 17 37825907 37825907 C T PNMT Silent p.I76I 0.11 TCGA-70-6722-01 17 42476454 42476454 C G GPATCH8 Missense_Mutation p.R997S 0.07 tolerated(0.24) unknown(0) TCGA-70-6722-01 17 42849019 42849019 C T ADAM11 Missense_Mutation p.S150F 0.10 deleterious(0) probably_damaging(0.998) TCGA-70-6722-01 17 47794918 47794918 A G FAM117A Silent p.H289H 0.05 TCGA-70-6722-01 17 4860153 4860153 G A ENO3 Missense_Mutation p.E402K 0.26 deleterious_low_confidence(0) possibly_damaging(0.877) TCGA-70-6722-01 17 54969297 54969297 A T TRIM25 Missense_Mutation p.W553R 0.17 deleterious(0) probably_damaging(0.986) TCGA-70-6722-01 17 56772457 56772458 - T RAD51C Frame_Shift_Ins p.S105Ffs*5 0.13 TCGA-70-6722-01 17 63198196 63198196 C A RGS9 Nonsense_Mutation p.Y354* 0.17 TCGA-70-6722-01 17 72285877 72285877 T A DNAI2 Splice_Site p.X204_splice 0.22 TCGA-70-6722-01 17 7579311 7579311 C G TP53 Splice_Site p.X125_splice 0.29 TCGA-70-6722-01 18 10696398 10696398 C A PIEZO2 Missense_Mutation p.A2210S 0.22 deleterious(0) benign(0.04) TCGA-70-6722-01 18 10696517 10696517 G T PIEZO2 Missense_Mutation p.P2170H 0.17 deleterious(0) probably_damaging(0.99) TCGA-70-6722-01 18 28598197 28598197 G T DSC3 Missense_Mutation p.A368E 0.31 tolerated(0.45) benign(0.16) TCGA-70-6722-01 18 31325404 31325404 C A ASXL3 Silent p.G1864G 0.25 TCGA-70-6722-01 18 32887790 32887790 G T ZNF271 RNA 0.23 TCGA-70-6722-01 18 40695401 40695401 T CC RIT2 Frame_Shift_Ins p.V31Sfs*3 0.22 TCGA-70-6722-01 19 10625146 10625146 G A S1PR5 Missense_Mutation p.A181V 0.14 tolerated(0.19) benign(0.171) TCGA-70-6722-01 19 15567015 15567015 C A RASAL3 Missense_Mutation p.V541L 0.15 deleterious(0) probably_damaging(0.999) TCGA-70-6722-01 19 15760759 15760759 C A CYP4F3 Silent p.L228L 0.11 TCGA-70-6722-01 19 16884028 16884028 C A NWD1 Silent p.A834A 0.12 TCGA-70-6722-01 19 17738671 17738671 C A UNC13A Splice_Site p.X1277_splice 0.13 TCGA-70-6722-01 19 17881694 17881694 G T FCHO1 Missense_Mutation p.D195Y 0.19 deleterious(0.01) possibly_damaging(0.807) TCGA-70-6722-01 19 18322679 18322679 T A PDE4C Missense_Mutation p.T561S 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-70-6722-01 19 19338799 19338799 G A NCAN Silent p.L790L 0.11 TCGA-70-6722-01 19 20002979 20002979 G C ZNF253 Missense_Mutation p.R308T 0.15 deleterious(0) benign(0.095) TCGA-70-6722-01 19 21476251 21476251 C A ZNF708 Missense_Mutation p.C506F 0.15 deleterious(0.01) probably_damaging(0.958) TCGA-70-6722-01 19 22941645 22941645 G T ZNF99 Missense_Mutation p.L356I 0.11 deleterious(0) possibly_damaging(0.581) TCGA-70-6722-01 19 35850009 35850009 G T FFAR3 Missense_Mutation p.V73L 0.23 tolerated(0.16) benign(0.14) TCGA-70-6722-01 19 36237348 36237348 G T PSENEN Missense_Mutation p.W30C 0.25 deleterious(0) probably_damaging(1) TCGA-70-6722-01 19 36357262 36357262 C A KIRREL2 Silent p.P665P 0.14 TCGA-70-6722-01 19 3977846 3977846 C A EEF2 Missense_Mutation p.V680L 0.21 deleterious(0.05) benign(0.036) TCGA-70-6722-01 19 42794466 42794466 G T CIC Missense_Mutation p.G516W 0.08 probably_damaging(0.996) TCGA-70-6722-01 19 46476593 46476593 G C NOVA2 Missense_Mutation p.P6R 0.38 tolerated(0.05) unknown(0) TCGA-70-6722-01 19 47823172 47823172 C T C5AR1 Silent p.V46V 0.08 TCGA-70-6722-01 19 48305217 48305217 G T TPRX1 Missense_Mutation p.P351T 0.35 tolerated_low_confidence(0.05) probably_damaging(0.958) TCGA-70-6722-01 19 49999649 49999649 C G RPS11 5'UTR 0.20 TCGA-70-6722-01 19 51326992 51326992 C A KLK1 Missense_Mutation p.V5F 0.05 tolerated(0.05) possibly_damaging(0.835) TCGA-70-6722-01 19 52130831 52130831 C A SIGLEC5 Missense_Mutation p.G389V 0.20 deleterious(0) probably_damaging(0.991) TCGA-70-6722-01 19 53015502 53015502 G A ZNF578 3'Flank 0.11 TCGA-70-6722-01 19 54230232 54230232 G A MIR526A2 RNA 0.16 TCGA-70-6722-01 19 54606174 54606174 C A NDUFA3 5'UTR 0.36 TCGA-70-6722-01 19 55333110 55333110 C G KIR3DL1 Missense_Mutation p.S249C 0.40 deleterious(0) possibly_damaging(0.828) TCGA-70-6722-01 19 55699514 55699514 C T PTPRH Missense_Mutation p.E803K 0.10 benign(0.023) TCGA-70-6722-01 19 57175239 57175239 T A ZNF835 Missense_Mutation p.E443V 0.07 deleterious(0) benign(0.246) TCGA-70-6722-01 19 58549470 58549470 C T ZSCAN1 Missense_Mutation p.A89V 0.24 tolerated(0.18) benign(0.358) TCGA-70-6722-01 19 58564993 58564993 C G ZSCAN1 Missense_Mutation p.H267Q 0.35 tolerated(0.22) benign(0.073) TCGA-70-6722-01 19 643539 643539 C T FGF22 Missense_Mutation p.R150W 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-70-6722-01 19 6763757 6763757 C G SH2D3A Translation_Start_Site p.M1? 0.08 deleterious_low_confidence(0.01) benign(0.139) TCGA-70-6722-01 19 758684 758684 G T MISP Nonsense_Mutation p.E580* 0.15 TCGA-70-6722-01 19 9008248 9008248 G T MUC16 Missense_Mutation p.Q13102K 0.18 possibly_damaging(0.468) TCGA-70-6722-01 19 9074837 9074838 GG - MUC16 Frame_Shift_Del p.T4203Nfs*24 0.22 TCGA-70-6722-01 19 9075049 9075049 C G MUC16 Missense_Mutation p.E4133Q 0.18 unknown(0) TCGA-70-6722-01 19 9577701 9577701 G T ZNF560 Missense_Mutation p.S641Y 0.21 deleterious(0) possibly_damaging(0.831) TCGA-70-6722-01 1 104160094 104160094 G T AMY2A Missense_Mutation p.G11V 0.17 tolerated(0.12) benign(0.049) TCGA-70-6722-01 1 110604103 110604103 G T ALX3 Missense_Mutation p.A226D 0.24 deleterious(0.01) benign(0.093) TCGA-70-6722-01 1 111957320 111957320 C A OVGP1 Silent p.V601V 0.16 TCGA-70-6722-01 1 114524239 114524239 C T OLFML3 Missense_Mutation p.P357S 0.27 tolerated(1) benign(0.002) TCGA-70-6722-01 1 155717778 155717778 G A GON4L 3'Flank 0.16 TCGA-70-6722-01 1 157745576 157745576 G C FCRL2 Missense_Mutation p.T14S 0.10 tolerated_low_confidence(1) benign(0.001) TCGA-70-6722-01 1 161017576 161017576 G - ARHGAP30 Frame_Shift_Del p.L1079Cfs*25 0.08 TCGA-70-6722-01 1 161681143 161681143 G T FCRLA Missense_Mutation p.R149S 0.13 tolerated(0.69) benign(0.14) TCGA-70-6722-01 1 16375649 16375649 C G CLCNKB Missense_Mutation p.H230Q 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-70-6722-01 1 165514029 165514029 G T LRRC52 Missense_Mutation p.D166Y 0.19 deleterious(0) probably_damaging(0.987) TCGA-70-6722-01 1 167096615 167096615 G C DUSP27 Silent p.P749P 0.18 TCGA-70-6722-01 1 169578860 169578860 C A SELP Silent p.A405A 0.18 TCGA-70-6722-01 1 17030485 17030485 G A ESPNP RNA 0.05 TCGA-70-6722-01 1 175046707 175046707 C A TNN Silent p.P51P 0.26 TCGA-70-6722-01 1 183816796 183816796 G A RGL1 Missense_Mutation p.E114K 0.15 deleterious(0.01) probably_damaging(0.98) TCGA-70-6722-01 1 190234052 190234052 G T BRINP3 Missense_Mutation p.D187E 0.11 deleterious(0) probably_damaging(0.998) TCGA-70-6722-01 1 206821938 206821938 G T DYRK3 Silent p.V465V 0.17 TCGA-70-6722-01 1 22175404 22175404 G A HSPG2 Missense_Mutation p.R2523C 0.12 possibly_damaging(0.582) TCGA-70-6722-01 1 22181477 22181477 C A HSPG2 Splice_Site p.X2000_splice 0.10 TCGA-70-6722-01 1 222713669 222713669 C - HHIPL2 Frame_Shift_Del p.G378Efs*4 0.20 TCGA-70-6722-01 1 228444413 228444413 G A OBSCN Silent p.G1549G 0.10 TCGA-70-6722-01 1 22987582 22987582 C T C1QB Silent p.P155P 0.10 TCGA-70-6722-01 1 237754118 237754118 G T RYR2 Missense_Mutation p.G1329V 0.22 benign(0.004) TCGA-70-6722-01 1 246719931 246719931 T C TFB2M Missense_Mutation p.I217V 0.14 tolerated(0.19) benign(0.203) TCGA-70-6722-01 1 248112719 248112719 C A OR2L8 Missense_Mutation p.A187D 0.07 deleterious(0) probably_damaging(0.989) TCGA-70-6722-01 1 248569946 248569946 C T OR2T1 Silent p.P217P 0.08 TCGA-70-6722-01 1 32796447 32796447 G T HDAC1 Missense_Mutation p.R306L 0.15 deleterious(0) possibly_damaging(0.592) TCGA-70-6722-01 1 34180320 34180320 C A CSMD2 Missense_Mutation p.K1051N 0.28 tolerated(0.55) benign(0.315) TCGA-70-6722-01 1 37270545 37270545 C A GRIK3 Intron 0.08 TCGA-70-6722-01 1 38227060 38227060 C A EPHA10 Intron 0.18 TCGA-70-6722-01 1 40031023 40031023 C T PABPC4 Missense_Mutation p.G334R 0.15 deleterious(0) probably_damaging(1) TCGA-70-6722-01 1 44121382 44121382 A G KDM4A Missense_Mutation p.I87V 0.11 deleterious(0.01) benign(0.001) TCGA-70-6722-01 1 45484728 45484728 T C ZSWIM5 Missense_Mutation p.I986V 0.17 tolerated(0.22) unknown(0) TCGA-70-6722-01 1 46871137 46871137 G T FAAH Missense_Mutation p.V180L 0.17 tolerated(0.08) benign(0.013) TCGA-70-6722-01 1 47154048 47154048 T A EFCAB14 Nonsense_Mutation p.K322* 0.19 TCGA-70-6722-01 1 55509579 55509579 T A PCSK9 Missense_Mutation p.S91T 0.13 tolerated(0.48) benign(0) TCGA-70-6722-01 1 6272365 6272365 G T RNF207 Silent p.S457S 0.14 TCGA-70-6722-01 1 70144063 70144063 G T LRRC7 Splice_Site p.X1_splice 0.14 TCGA-70-6722-01 1 75086533 75086533 C A C1orf173 Silent p.G295G 0.24 TCGA-70-6722-01 1 79386071 79386071 C T ELTD1 Missense_Mutation p.G420S 0.09 tolerated(0.23) benign(0.206) TCGA-70-6722-01 1 84335629 84335629 G C TTLL7 3'UTR 0.07 TCGA-70-6722-01 1 89322940 89322940 C A GTF2B Missense_Mutation p.A256S 0.14 deleterious(0) probably_damaging(1) TCGA-70-6722-01 1 89448597 89448597 C A RBMXL1 Missense_Mutation p.G305C 0.21 deleterious(0.03) probably_damaging(1) TCGA-70-6722-01 1 89583373 89583373 C G GBP2 Missense_Mutation p.S171T 0.27 deleterious(0.02) benign(0.358) TCGA-70-6722-01 1 92479838 92479838 G T BRDT 3'UTR 0.14 TCGA-70-6722-01 1 9714484 9714484 T A C1orf200 Missense_Mutation p.Q4L 0.14 deleterious_low_confidence(0.03) benign(0.005) TCGA-70-6722-01 20 18396048 18396048 C A DZANK1 Missense_Mutation p.G334W 0.28 deleterious(0) probably_damaging(0.986) TCGA-70-6722-01 20 25443158 25443158 T A NINL Missense_Mutation p.Q1148L 0.10 deleterious(0) benign(0.026) TCGA-70-6722-01 20 30898587 30898587 G A KIF3B Missense_Mutation p.R336H 0.11 deleterious(0) probably_damaging(0.999) TCGA-70-6722-01 20 40944572 40944572 C G PTPRT Missense_Mutation p.E644Q 0.31 tolerated(0.27) benign(0.058) TCGA-70-6722-01 20 55908750 55908750 C A SPO11 Silent p.I114I 0.12 TCGA-70-6722-01 20 56140805 56140805 C A PCK1 Missense_Mutation p.P605H 0.25 deleterious(0) probably_damaging(1) TCGA-70-6722-01 20 57829620 57829620 G T ZNF831 Missense_Mutation p.G1619V 0.07 deleterious(0.01) possibly_damaging(0.598) TCGA-70-6722-01 20 58441392 58441392 C T SYCP2 Missense_Mutation p.E1426K 0.15 deleterious(0) possibly_damaging(0.898) TCGA-70-6722-01 20 61513663 61513663 C T DIDO1 Silent p.R1215R 0.15 TCGA-70-6722-01 20 61528077 61528077 C A DIDO1 Silent p.A620A 0.55 TCGA-70-6722-01 20 62221642 62221642 C T GMEB2 Missense_Mutation p.G465S 0.10 tolerated(0.34) benign(0.028) TCGA-70-6722-01 21 15599595 15599595 A G RBM11 Missense_Mutation p.K276R 0.31 deleterious_low_confidence(0.02) unknown(0) TCGA-70-6722-01 21 17198684 17198684 G T USP25 Missense_Mutation p.S489I 0.14 deleterious(0.05) possibly_damaging(0.46) TCGA-70-6722-01 21 32638720 32638720 T A TIAM1 Missense_Mutation p.Q190L 0.17 tolerated_low_confidence(0.12) possibly_damaging(0.894) TCGA-70-6722-01 22 18232921 18232921 C T BID Missense_Mutation p.E34K 0.14 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-70-6722-01 22 20819555 20819555 C A KLHL22 Silent p.L234L 0.24 TCGA-70-6722-01 22 23247194 23247194 T A IGLJ3 Missense_Mutation p.L47Q 0.10 deleterious_low_confidence(0) possibly_damaging(0.887) TCGA-70-6722-01 22 26317325 26317325 G T MYO18B Missense_Mutation p.E1822D 0.19 tolerated(0.3) benign(0.004) TCGA-70-6722-01 22 37387317 37387317 C A TEX33 Missense_Mutation p.G249V 0.25 deleterious(0.03) probably_damaging(0.979) TCGA-70-6722-01 22 42172159 42172159 G A MEI1 Silent p.L866L 0.15 TCGA-70-6722-01 22 42781138 42781138 G T NFAM1 3'UTR 0.10 TCGA-70-6722-01 2 107423361 107423361 C T ST6GAL2 Missense_Mutation p.E455K 0.14 probably_damaging(1) TCGA-70-6722-01 2 121685040 121685040 C A GLI2 Missense_Mutation p.H84Q 0.39 deleterious(0.01) possibly_damaging(0.675) TCGA-70-6722-01 2 124783296 124783296 A T CNTNAP5 Missense_Mutation p.L23F 0.21 tolerated(0.12) benign(0.007) TCGA-70-6722-01 2 133539769 133539769 C A NCKAP5 Missense_Mutation p.V1539F 0.26 tolerated(0.16) benign(0.367) TCGA-70-6722-01 2 133636486 133636486 C A NCKAP5 Nonsense_Mutation p.E195* 0.19 TCGA-70-6722-01 2 141359163 141359163 G C LRP1B Missense_Mutation p.T2282R 0.21 possibly_damaging(0.507) TCGA-70-6722-01 2 162760661 162760661 G T SLC4A10 Silent p.L530L 0.29 TCGA-70-6722-01 2 175618388 175618388 G T CHRNA1 Silent p.S232S 0.19 TCGA-70-6722-01 2 189868786 189868786 C A COL3A1 Missense_Mutation p.P914T 0.09 unknown(0) TCGA-70-6722-01 2 1926457 1926457 G T MYT1L Silent p.R362R 0.14 TCGA-70-6722-01 2 200298194 200298194 G C SATB2 Silent p.G71G 0.16 TCGA-70-6722-01 2 215854167 215854167 A - ABCA12 Frame_Shift_Del p.Y1239Tfs*18 0.25 TCGA-70-6722-01 2 219688388 219688388 G A PRKAG3 3'UTR 0.19 TCGA-70-6722-01 2 240029801 240029801 C T HDAC4 Missense_Mutation p.R681K 0.17 deleterious(0) probably_damaging(0.999) TCGA-70-6722-01 2 24338438 24338438 T C PFN4 3'UTR 0.10 TCGA-70-6722-01 2 31598392 31598392 C A XDH Missense_Mutation p.V486L 0.26 deleterious(0) benign(0.142) TCGA-70-6722-01 2 33568004 33568004 C T LTBP1 Missense_Mutation p.A1277V 0.09 tolerated(0.32) benign(0.269) TCGA-70-6722-01 2 67632417 67632417 G A ETAA1 Missense_Mutation p.G868E 0.06 tolerated(0.8) benign(0.001) TCGA-70-6722-01 2 74757145 74757145 G A HTRA2 Silent p.P4P 0.14 TCGA-70-6722-01 2 79348720 79348720 C G REG1A Missense_Mutation p.R33G 0.11 deleterious(0.02) benign(0.292) TCGA-70-6722-01 2 88367421 88367421 C A SMYD1 Missense_Mutation p.T13N 0.14 tolerated(0.54) benign(0.001) TCGA-70-6722-01 2 88396283 88396283 G C SMYD1 Missense_Mutation p.G290R 0.17 deleterious(0) benign(0.092) TCGA-70-6722-01 2 88402583 88402583 C G SMYD1 Missense_Mutation p.Q299E 0.13 tolerated(1) benign(0) TCGA-70-6722-01 3 10370598 10370598 C A ATP2B2 Missense_Mutation p.S1211I 0.23 deleterious_low_confidence(0) benign(0.432) TCGA-70-6722-01 3 11300949 11300949 G T HRH1 Missense_Mutation p.V76L 0.25 deleterious(0) probably_damaging(0.995) TCGA-70-6722-01 3 114070443 114070443 C A ZBTB20 Missense_Mutation p.G161V 0.56 deleterious(0) probably_damaging(0.999) TCGA-70-6722-01 3 118647366 118647366 G A IGSF11 Silent p.L138L 0.11 TCGA-70-6722-01 3 134670256 134670256 G T EPHB1 Missense_Mutation p.R56L 0.45 deleterious(0.01) probably_damaging(0.995) TCGA-70-6722-01 3 1414067 1414067 A T CNTN6 Missense_Mutation p.D526V 0.14 deleterious(0) probably_damaging(1) TCGA-70-6722-01 3 141917686 141917686 C A GK5 Missense_Mutation p.Q167H 0.07 tolerated(0.85) benign(0.008) TCGA-70-6722-01 3 150377748 150377748 A C FAM194A Silent p.L641L 0.39 TCGA-70-6722-01 3 151535239 151535239 C T AADAC Missense_Mutation p.S75L 0.18 deleterious(0.01) probably_damaging(0.971) TCGA-70-6722-01 3 172537961 172537961 C T ECT2 Silent p.V893V 0.10 TCGA-70-6722-01 3 178928298 178928298 A T PIK3CA Missense_Mutation p.H495L 0.38 tolerated(0.66) benign(0) TCGA-70-6722-01 3 25832949 25832949 T A OXSM Silent p.T146T 0.28 TCGA-70-6722-01 3 25832953 25832953 G T OXSM Missense_Mutation p.V148F 0.28 deleterious(0) probably_damaging(1) TCGA-70-6722-01 3 51937318 51937318 T A IQCF1 5'UTR 0.21 TCGA-70-6722-01 3 55922476 55922476 C A ERC2 Silent p.A835A 0.22 TCGA-70-6722-01 3 98251656 98251656 T G GPR15 Missense_Mutation p.F260C 0.37 deleterious(0.02) benign(0.133) TCGA-70-6722-01 4 109571833 109571833 C T OSTC Missense_Mutation p.P8S 0.33 deleterious(0.01) probably_damaging(0.909) TCGA-70-6722-01 4 114278280 114278280 C A ANK2 Missense_Mutation p.Q2836K 0.28 benign(0.001) TCGA-70-6722-01 4 115997762 115997762 G T NDST4 Nonsense_Mutation p.S144* 0.29 TCGA-70-6722-01 4 13544134 13544134 G T NKX3-2 Missense_Mutation p.T162N 0.16 tolerated(0.3) benign(0.008) TCGA-70-6722-01 4 13616019 13616019 C A BOD1L1 Missense_Mutation p.K325N 0.44 probably_damaging(0.999) TCGA-70-6722-01 4 148743893 148743893 A T ARHGAP10 Missense_Mutation p.Q57L 0.20 tolerated(0.31) probably_damaging(0.916) TCGA-70-6722-01 4 167833819 167833819 G T SPOCK3 Silent p.V145V 0.19 TCGA-70-6722-01 4 185138911 185138911 G T ENPP6 Missense_Mutation p.S21Y 0.25 tolerated(0.29) benign(0.347) TCGA-70-6722-01 4 30921915 30921915 G C PCDH7 Silent p.A1105A 0.23 TCGA-70-6722-01 4 3422404 3422404 G A RGS12 Missense_Mutation p.E933K 0.11 deleterious(0.02) possibly_damaging(0.577) TCGA-70-6722-01 4 42403482 42403482 T C SHISA3 3'UTR 0.32 TCGA-70-6722-01 4 57182014 57182014 C A KIAA1211 Silent p.P782P 0.23 TCGA-70-6722-01 4 71099810 71099810 C A FDCSP Missense_Mutation p.P55Q 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.904) TCGA-70-6722-01 4 77662456 77662456 A T SHROOM3 Nonsense_Mutation p.R1044* 0.31 TCGA-70-6722-01 4 88414957 88414957 G C SPARCL1 Missense_Mutation p.P332R 0.25 deleterious(0.03) possibly_damaging(0.534) TCGA-70-6722-01 4 9783772 9783772 A G DRD5 Missense_Mutation p.Q40R 0.25 tolerated(1) benign(0.003) TCGA-70-6722-01 4 9828172 9828172 C A SLC2A9 Missense_Mutation p.G491V 0.29 tolerated(0.33) probably_damaging(0.989) TCGA-70-6722-01 5 13911575 13911575 C A DNAH5 Nonsense_Mutation p.E522* 0.28 TCGA-70-6722-01 5 13911576 13911576 C A DNAH5 Missense_Mutation p.K521N 0.27 possibly_damaging(0.728) TCGA-70-6722-01 5 140167301 140167301 A T PCDHA1 Missense_Mutation p.T476S 0.29 tolerated_low_confidence(0.06) possibly_damaging(0.771) TCGA-70-6722-01 5 140167302 140167302 C T PCDHA1 Missense_Mutation p.T476M 0.29 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-70-6722-01 5 140625185 140625185 A T PCDHB15 Missense_Mutation p.Q13H 0.31 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-70-6722-01 5 140762771 140762771 G T PCDHGA7 Missense_Mutation p.C102F 0.36 deleterious_low_confidence(0) possibly_damaging(0.903) TCGA-70-6722-01 5 140798237 140798237 G T PCDHGB7 Nonsense_Mutation p.E271* 0.26 TCGA-70-6722-01 5 14336720 14336720 G C TRIO Missense_Mutation p.E644Q 0.09 possibly_damaging(0.517) TCGA-70-6722-01 5 179151779 179151779 A T CANX Missense_Mutation p.K547I 0.33 tolerated(0.07) benign(0.209) TCGA-70-6722-01 5 1798658 1798658 G A MRPL36 3'UTR 0.12 TCGA-70-6722-01 5 24509761 24509761 C A CDH10 Silent p.L390L 0.18 TCGA-70-6722-01 5 35065578 35065578 C A PRLR Silent p.L494L 0.13 TCGA-70-6722-01 5 39134313 39134313 C A FYB Missense_Mutation p.S615I 0.06 deleterious(0.01) benign(0.235) TCGA-70-6722-01 5 63256965 63256965 G T HTR1A Silent p.G194G 0.24 TCGA-70-6722-01 5 79028312 79028312 G C CMYA5 Missense_Mutation p.V1242L 0.13 benign(0.006) TCGA-70-6722-01 5 79029057 79029057 G C CMYA5 Missense_Mutation p.R1490T 0.17 benign(0.05) TCGA-70-6722-01 5 79029058 79029058 G T CMYA5 Missense_Mutation p.R1490S 0.17 benign(0.05) TCGA-70-6722-01 5 89925282 89925282 A G GPR98 Missense_Mutation p.K589E 0.25 benign(0) TCGA-70-6722-01 5 89953949 89953949 G T GPR98 Nonsense_Mutation p.E1536* 0.25 TCGA-70-6722-01 5 93077094 93077094 T G POU5F2 Missense_Mutation p.D59A 0.27 deleterious(0) benign(0) TCGA-70-6722-01 5 94991675 94991675 C A RFESD Intron 0.26 TCGA-70-6722-01 6 110935789 110935789 C A CDK19 Silent p.S486S 0.28 TCGA-70-6722-01 6 117859846 117859846 C T DCBLD1 Missense_Mutation p.S275L 0.13 deleterious(0.03) benign(0.009) TCGA-70-6722-01 6 130378581 130378581 G C L3MBTL3 Missense_Mutation p.C233S 0.22 tolerated(1) benign(0.005) TCGA-70-6722-01 6 136597033 136597033 G T BCLAF1 Missense_Mutation p.R544S 0.08 tolerated(0.23) possibly_damaging(0.555) TCGA-70-6722-01 6 158318005 158318005 C A SNX9 Silent p.G149G 0.27 TCGA-70-6722-01 6 160998175 160998175 G T LPA Missense_Mutation p.P1542T 0.23 deleterious(0) probably_damaging(0.995) TCGA-70-6722-01 6 17661915 17661915 C A NUP153 Missense_Mutation p.R455L 0.22 tolerated(0.46) benign(0.176) TCGA-70-6722-01 6 22569854 22569854 C - HDGFL1 Frame_Shift_Del p.K18Sfs*2 0.18 TCGA-70-6722-01 6 25973469 25973469 C T TRIM38 Missense_Mutation p.S277F 0.24 tolerated(0.09) benign(0.112) TCGA-70-6722-01 6 32047066 32047066 C A RNA5SP206 5'Flank 0.26 TCGA-70-6722-01 6 32122917 32122917 G A PPT2 Missense_Mutation p.M104I 0.10 tolerated(0.17) possibly_damaging(0.501) TCGA-70-6722-01 6 32148887 32148887 G T AGER 3'UTR 0.09 TCGA-70-6722-01 6 40399870 40399870 C T LRFN2 Missense_Mutation p.R328H 0.12 deleterious(0.02) probably_damaging(0.96) TCGA-70-6722-01 6 70964204 70964204 C G COL9A1 Missense_Mutation p.G565A 0.09 probably_damaging(0.999) TCGA-70-6722-01 6 76022257 76022257 C T FILIP1 Silent p.V1097V 0.13 TCGA-70-6722-01 6 87726078 87726078 G T HTR1E Silent p.L342L 0.09 TCGA-70-6722-01 7 100210480 100210480 G T MOSPD3 Silent p.R22R 0.29 TCGA-70-6722-01 7 100371097 100371097 C A ZAN Missense_Mutation p.P1872Q 0.30 unknown(0) TCGA-70-6722-01 7 100677549 100677549 C A MUC17 Missense_Mutation p.T951N 0.11 possibly_damaging(0.884) TCGA-70-6722-01 7 106508804 106508804 C T PIK3CG Silent p.S266S 0.16 TCGA-70-6722-01 7 121944015 121944015 G A FEZF1 Silent p.A159A 0.29 TCGA-70-6722-01 7 122342126 122342126 G C RNF148 Missense_Mutation p.Q227E 0.15 tolerated(0.1) benign(0.014) TCGA-70-6722-01 7 128480702 128480702 G T FLNC Silent p.T550T 0.39 TCGA-70-6722-01 7 135078671 135078671 T A CNOT4 Silent p.A542A 0.14 TCGA-70-6722-01 7 137374731 137374731 G T DGKI Missense_Mutation p.A140E 0.09 deleterious(0) benign(0.053) TCGA-70-6722-01 7 139793879 139793879 C G KDM7A Missense_Mutation p.D812H 0.10 tolerated_low_confidence(0.05) possibly_damaging(0.64) TCGA-70-6722-01 7 142028511 142028511 G T TRBV6-1 Missense_Mutation p.G82V 0.26 deleterious(0) probably_damaging(0.989) TCGA-70-6722-01 7 142247248 142247248 C A TRBV7-3 Missense_Mutation p.G70C 0.24 TCGA-70-6722-01 7 143141210 143141210 G T TAS2R60 Missense_Mutation p.R222I 0.30 deleterious(0) probably_damaging(0.966) TCGA-70-6722-01 7 143884332 143884332 C A ARHGEF35 Missense_Mutation p.W382L 0.22 tolerated(0.07) possibly_damaging(0.897) TCGA-70-6722-01 7 147815235 147815235 C - CNTNAP2 Frame_Shift_Del p.P804Qfs*27 0.10 TCGA-70-6722-01 7 148802283 148802283 G A ZNF425 Missense_Mutation p.S227F 0.04 tolerated(0.19) benign(0.001) TCGA-70-6722-01 7 150698429 150698429 C A NOS3 Silent p.I448I 0.25 TCGA-70-6722-01 7 23299746 23299746 A T GPNMB Missense_Mutation p.Y230F 0.16 tolerated(0.12) possibly_damaging(0.62) TCGA-70-6722-01 7 27194517 27194517 G T HOXA7 3'UTR 0.39 TCGA-70-6722-01 7 27213793 27213793 C G HOXA10 Missense_Mutation p.G45R 0.22 tolerated(0.08) possibly_damaging(0.842) TCGA-70-6722-01 7 31126607 31126607 G T ADCYAP1R1 Missense_Mutation p.D292Y 0.13 tolerated(0.08) probably_damaging(0.969) TCGA-70-6722-01 7 42007481 42007481 C A GLI3 Missense_Mutation p.S715I 0.10 deleterious(0) possibly_damaging(0.724) TCGA-70-6722-01 7 45956972 45956972 G T IGFBP3 Missense_Mutation p.T163K 0.16 tolerated(0.21) possibly_damaging(0.611) TCGA-70-6722-01 7 50468275 50468275 G C IKZF1 Missense_Mutation p.E462Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-70-6722-01 7 55259469 55259469 G T EGFR Missense_Mutation p.V843L 0.69 deleterious(0) possibly_damaging(0.904) TCGA-70-6722-01 7 55259524 55259524 T A EGFR Missense_Mutation p.L861Q 0.63 deleterious(0) possibly_damaging(0.831) TCGA-70-6722-01 7 5920533 5920533 G A OCM Missense_Mutation p.D5N 0.16 tolerated(0.14) benign(0.331) TCGA-70-6722-01 7 73818282 73818282 A T CLIP2 3'UTR 0.10 TCGA-70-6722-01 7 87082427 87082427 C A ABCB4 Missense_Mutation p.L123F 0.25 deleterious(0.01) benign(0.314) TCGA-70-6722-01 7 92019373 92019373 A T ANKIB1 Silent p.P665P 0.27 TCGA-70-6722-01 7 97920546 97920546 C G BRI3 Silent p.T123T 0.27 TCGA-70-6722-01 8 105010469 105010469 G C RIMS2 Intron 0.29 TCGA-70-6722-01 8 113237021 113237021 G T CSMD3 Missense_Mutation p.N3701K 0.24 deleterious(0) possibly_damaging(0.72) TCGA-70-6722-01 8 113293558 113293558 C A CSMD3 Missense_Mutation p.G3118V 0.31 deleterious(0) possibly_damaging(0.869) TCGA-70-6722-01 8 116617174 116617174 C T TRPS1 Missense_Mutation p.G341E 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-70-6722-01 8 119941028 119941028 G T TNFRSF11B Missense_Mutation p.H181N 0.15 tolerated(0.13) benign(0.193) TCGA-70-6722-01 8 121240961 121240961 G - COL14A1 Frame_Shift_Del p.W717* 0.18 TCGA-70-6722-01 8 131130758 131130758 C A ASAP1 Nonsense_Mutation p.E591* 0.14 TCGA-70-6722-01 8 13259053 13259053 G T DLC1 Missense_Mutation p.Q367K 0.20 tolerated_low_confidence(0.07) benign(0.374) TCGA-70-6722-01 8 139163751 139163751 C A FAM135B Silent p.V989V 0.06 TCGA-70-6722-01 8 27402089 27402089 G T EPHX2 3'UTR 0.24 TCGA-70-6722-01 8 39613369 39613369 T A ADAM2 Nonsense_Mutation p.R559* 0.15 TCGA-70-6722-01 8 41518947 41518947 C A ANK1 Intron 0.15 TCGA-70-6722-01 8 41518949 41518949 T C ANK1 Intron 0.14 TCGA-70-6722-01 8 55060196 55060196 G C MRPL15 Missense_Mutation p.A270P 0.17 tolerated(0.1) benign(0.005) TCGA-70-6722-01 8 55537694 55537694 G A RP1 Missense_Mutation p.E418K 0.14 deleterious(0.01) benign(0.103) TCGA-70-6722-01 8 61777948 61777948 A T CHD7 Missense_Mutation p.N2817I 0.20 possibly_damaging(0.795) TCGA-70-6722-01 8 77690498 77690498 G T ZFHX4 Missense_Mutation p.A1050S 0.26 possibly_damaging(0.567) TCGA-70-6722-01 8 77764219 77764219 C A ZFHX4 Missense_Mutation p.P1688T 0.20 benign(0) TCGA-70-6722-01 8 90965859 90965859 A G NBN Silent p.S486S 0.12 TCGA-70-6722-01 8 95677390 95677390 A T ESRP1 Missense_Mutation p.K299N 0.10 deleterious(0) possibly_damaging(0.73) TCGA-70-6722-01 9 111625376 111625376 C G ACTL7A Missense_Mutation p.N258K 0.15 tolerated(0.24) benign(0.072) TCGA-70-6722-01 9 115952794 115952794 G A FKBP15 Missense_Mutation p.P377L 0.23 deleterious(0) probably_damaging(0.999) TCGA-70-6722-01 9 121971049 121971049 C A BRINP1 Missense_Mutation p.G365C 0.15 deleterious(0.01) possibly_damaging(0.805) TCGA-70-6722-01 9 131186890 131186890 G T CERCAM Missense_Mutation p.A255S 0.28 tolerated(0.15) benign(0.063) TCGA-70-6722-01 9 132642449 132642449 G C USP20 Missense_Mutation p.G881A 0.07 deleterious(0.01) probably_damaging(0.955) TCGA-70-6722-01 9 133488373 133488373 G T FUBP3 Missense_Mutation p.R102L 0.10 deleterious(0) possibly_damaging(0.833) TCGA-70-6722-01 9 133488374 133488374 G T FUBP3 Silent p.R102R 0.10 TCGA-70-6722-01 9 133501800 133501800 G T FUBP3 Missense_Mutation p.G342V 0.28 deleterious(0.01) benign(0.378) TCGA-70-6722-01 9 133901760 133901760 C A LAMC3 Missense_Mutation p.D154E 0.10 tolerated(0.43) benign(0.062) TCGA-70-6722-01 9 14618940 14618940 C T ZDHHC21 3'UTR 0.29 TCGA-70-6722-01 9 4567684 4567684 G A SLC1A1 Missense_Mutation p.E167K 0.24 tolerated(0.85) benign(0.012) TCGA-70-6722-01 9 5922375 5922375 C A KIAA2026 Missense_Mutation p.E1207D 0.16 tolerated(0.11) probably_damaging(0.971) TCGA-70-6722-01 9 90343291 90343291 G T CTSL Missense_Mutation p.V126L 0.27 deleterious(0) possibly_damaging(0.677) TCGA-70-6722-01 X 100630267 100630267 G - BTK Frame_Shift_Del p.A3Qfs*2 0.28 TCGA-70-6722-01 X 102529354 102529354 C - TCEAL5 Frame_Shift_Del p.K47Rfs*94 0.43 TCGA-70-6722-01 X 103045595 103045595 C A PLP1 3'UTR 0.29 TCGA-70-6722-01 X 155003874 155003874 G T SPRY3 Missense_Mutation p.R114L 0.16 deleterious(0.03) benign(0.106) TCGA-70-6722-01 X 32662322 32662322 C T DMD Missense_Mutation p.V420I 0.18 benign(0.193) TCGA-70-6722-01 X 47085699 47085699 C A CDK16 Missense_Mutation p.R346S 0.14 deleterious(0) probably_damaging(1) TCGA-70-6722-01 X 50055568 50055568 G T CCNB3 Missense_Mutation p.S1120I 0.23 deleterious(0.02) benign(0.222) TCGA-70-6722-01 X 73066488 73066488 C A XIST RNA 0.27 TCGA-70-6722-01 X 79932487 79932487 C T BRWD3 Missense_Mutation p.G1677E 0.10 deleterious_low_confidence(0) unknown(0) TCGA-70-6722-01 X 8768140 8768140 G T FAM9A Missense_Mutation p.Q25K 0.42 deleterious_low_confidence(0.05) possibly_damaging(0.486) TCGA-70-6722-01 X 88009035 88009035 C A CPXCR1 Missense_Mutation p.P207H 0.23 deleterious(0) probably_damaging(0.979) TCGA-70-6722-01 X 88009343 88009343 T A CPXCR1 3'UTR 0.18 TCGA-70-6722-01 X 99657567 99657567 C A PCDH19 Silent p.G857G 0.36 TCGA-70-6723-01 10 103917285 103917285 G C NOLC1 Missense_Mutation p.E138D 0.40 tolerated_low_confidence(0.18) benign(0.217) TCGA-70-6723-01 10 26589812 26589812 C A GAD2 Silent p.V560V 0.42 TCGA-70-6723-01 10 7682733 7682733 T G ITIH5 Missense_Mutation p.T129P 0.45 deleterious(0.05) benign(0.042) TCGA-70-6723-01 10 82280235 82280235 C T TSPAN14 3'UTR 0.56 TCGA-70-6723-01 10 85973973 85973973 C T CDHR1 Missense_Mutation p.R726C 0.28 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-70-6723-01 11 110036409 110036409 G A ZC3H12C Missense_Mutation p.A867T 0.27 deleterious(0.02) benign(0.287) TCGA-70-6723-01 11 124252542 124252542 C A OR8B2 Missense_Mutation p.G233V 0.77 deleterious_low_confidence(0) possibly_damaging(0.71) TCGA-70-6723-01 11 1262892 1262892 G A MUC5B Silent p.R1594R 0.92 TCGA-70-6723-01 11 5247920 5247920 C A HBB Missense_Mutation p.V68L 0.86 deleterious(0) benign(0.106) TCGA-70-6723-01 11 57982553 57982553 C A OR1S1 Missense_Mutation p.Q113K 0.59 deleterious(0) probably_damaging(0.998) TCGA-70-6723-01 11 57995570 57995570 A T OR10Q1 Missense_Mutation p.C260S 0.33 tolerated(0.06) possibly_damaging(0.85) TCGA-70-6723-01 11 59828629 59828629 C T MS4A3 5'UTR 0.18 TCGA-70-6723-01 11 62445480 62445480 G A UBXN1 Missense_Mutation p.A134V 0.21 tolerated(0.61) benign(0.013) TCGA-70-6723-01 11 64111617 64111617 C T CCDC88B Missense_Mutation p.P535L 0.10 tolerated_low_confidence(0.68) benign(0.002) TCGA-70-6723-01 11 74049611 74049611 T C PGM2L1 Silent p.T556T 0.27 TCGA-70-6723-01 11 76867112 76867112 A G MYO7A Missense_Mutation p.S149G 0.97 tolerated(0.09) benign(0.046) TCGA-70-6723-01 11 8950936 8950936 C A C11orf16 Missense_Mutation p.K104N 0.06 deleterious(0) probably_damaging(0.965) TCGA-70-6723-01 12 10868337 10868337 C T YBX3 Missense_Mutation p.G136R 0.57 deleterious(0.03) probably_damaging(0.928) TCGA-70-6723-01 12 112685957 112685957 G A HECTD4 Nonsense_Mutation p.Q1242* 0.71 TCGA-70-6723-01 12 4737325 4737325 G A AKAP3 Missense_Mutation p.S248F 0.61 deleterious(0) probably_damaging(1) TCGA-70-6723-01 13 113740555 113740555 G T MCF2L Missense_Mutation p.G789C 0.33 deleterious(0) probably_damaging(0.995) TCGA-70-6723-01 14 20483135 20483135 C A OR4K14 Missense_Mutation p.W73L 0.57 tolerated(0.08) benign(0.005) TCGA-70-6723-01 14 22265828 22265828 A C TRAV8-1 Silent p.S37S 0.60 TCGA-70-6723-01 14 22466394 22466394 C T TRAV17 Silent p.F108F 0.30 TCGA-70-6723-01 14 94053012 94053012 C T UNC79 Silent p.T781T 0.87 TCGA-70-6723-01 15 22382725 22382725 T A OR4N4 Missense_Mutation p.F85I 0.09 deleterious(0.03) benign(0.077) TCGA-70-6723-01 15 28380782 28380782 C T HERC2 Silent p.S4024S 0.39 TCGA-70-6723-01 15 34646003 34646003 C - NUTM1 Frame_Shift_Del p.L308Cfs*7 0.37 TCGA-70-6723-01 15 40917450 40917450 G A CASC5 Missense_Mutation p.C1689Y 0.48 tolerated(0.09) possibly_damaging(0.824) TCGA-70-6723-01 15 43818760 43818760 T A MAP1A Missense_Mutation p.W1697R 0.45 probably_damaging(0.999) TCGA-70-6723-01 15 69327710 69327710 G T NOX5 Missense_Mutation p.R291L 0.37 deleterious(0) probably_damaging(0.958) TCGA-70-6723-01 16 22926572 22926572 C T HS3ST2 Missense_Mutation p.P265S 0.39 deleterious(0) probably_damaging(0.982) TCGA-70-6723-01 16 28604868 28604868 C T SULT1A2 Missense_Mutation p.A132T 0.05 deleterious(0.01) benign(0.354) TCGA-70-6723-01 16 28990770 28990770 G A SPNS1 Missense_Mutation p.G214E 0.43 deleterious(0.02) probably_damaging(0.982) TCGA-70-6723-01 16 46952534 46952534 T A GPT2 Missense_Mutation p.V301E 0.53 deleterious(0) probably_damaging(1) TCGA-70-6723-01 17 11701032 11701032 T C DNAH9 Missense_Mutation p.L2781P 0.21 probably_damaging(0.967) TCGA-70-6723-01 17 17207107 17207120 CGGCCGCCTGCGGC - NT5M Frame_Shift_Del p.G82Rfs*18 0.30 TCGA-70-6723-01 17 21319683 21319683 G A KCNJ12 Silent p.S343S 0.17 TCGA-70-6723-01 17 26653806 26653807 - A TMEM97 Frame_Shift_Ins p.*177Mfs*10 0.34 TCGA-70-6723-01 17 39274282 39274282 G A KRTAP4-11 Nonsense_Mutation p.Q96* 0.50 TCGA-70-6723-01 17 40706825 40706825 G C HSD17B1 Missense_Mutation p.G286R 0.11 tolerated(0.29) benign(0.173) TCGA-70-6723-01 17 42271707 42271707 C A ATXN7L3 Missense_Mutation p.G330V 0.53 deleterious_low_confidence(0.04) benign(0.08) TCGA-70-6723-01 17 53398125 53398125 C G HLF Missense_Mutation p.S258W 0.12 deleterious(0) probably_damaging(0.989) TCGA-70-6723-01 17 6428755 6428755 G A PITPNM3 Silent p.I49I 0.93 TCGA-70-6723-01 17 73736517 73736517 A T ITGB4 Missense_Mutation p.Q842L 0.64 tolerated(0.14) benign(0.354) TCGA-70-6723-01 17 7578370 7578370 C A TP53 Splice_Site p.X187_splice 0.91 TCGA-70-6723-01 17 79095665 79095665 G T AATK Missense_Mutation p.R691S 0.17 tolerated(0.12) benign(0.109) TCGA-70-6723-01 17 8701182 8701182 C A MFSD6L Silent p.P419P 0.47 TCGA-70-6723-01 18 2892173 2892173 C A EMILIN2 Nonsense_Mutation p.S683* 0.21 TCGA-70-6723-01 18 5395708 5395708 T G EPB41L3 Splice_Site p.X992_splice 0.20 TCGA-70-6723-01 18 67531632 67531632 G C CD226 Missense_Mutation p.T310S 0.70 tolerated(0.67) benign(0.292) TCGA-70-6723-01 18 6898528 6898528 C A ARHGAP28 Intron 0.56 TCGA-70-6723-01 19 36369793 36369793 T A APLP1 Missense_Mutation p.V551E 0.51 deleterious(0.03) possibly_damaging(0.751) TCGA-70-6723-01 19 3969742 3969742 G T DAPK3 5'UTR 0.94 TCGA-70-6723-01 19 4310281 4310281 A T FSD1 Missense_Mutation p.Q119H 0.82 tolerated(0.06) benign(0.173) TCGA-70-6723-01 1 14105511 14105511 A C PRDM2 Silent p.R407R 0.43 TCGA-70-6723-01 1 150429919 150429919 A T RPRD2 Silent p.G342G 0.30 TCGA-70-6723-01 1 156897713 156897713 C G LRRC71 Missense_Mutation p.R305G 0.17 tolerated(0.69) benign(0.003) TCGA-70-6723-01 1 161594172 161594172 G C FCGR3B 3'UTR 0.20 TCGA-70-6723-01 1 173454500 173454500 G T PRDX6 Missense_Mutation p.D85Y 0.09 deleterious(0) probably_damaging(0.999) TCGA-70-6723-01 1 175325553 175325553 C A TNR Missense_Mutation p.R1007L 0.64 deleterious(0.03) benign(0.003) TCGA-70-6723-01 1 183253165 183253165 G A NMNAT2 Missense_Mutation p.A180V 0.19 tolerated(0.13) probably_damaging(0.996) TCGA-70-6723-01 1 184764867 184764867 C T FAM129A Silent p.P677P 0.30 TCGA-70-6723-01 1 197073677 197073677 T A ASPM Silent p.S1568S 0.24 TCGA-70-6723-01 1 222721202 222721202 G C HHIPL2 Missense_Mutation p.S62C 0.09 tolerated(0.09) benign(0.119) TCGA-70-6723-01 1 247614957 247614957 A - OR2B11 Frame_Shift_Del p.W110Gfs*57 0.47 TCGA-70-6723-01 1 66798235 66798235 G A PDE4B Missense_Mutation p.D227N 0.25 deleterious(0) benign(0.012) TCGA-70-6723-01 20 3734752 3734752 C A C20orf27 Nonsense_Mutation p.E185* 0.62 TCGA-70-6723-01 22 39224455 39224455 G A NPTXR Silent p.T229T 0.40 TCGA-70-6723-01 2 10267220 10267220 G A RRM2 Missense_Mutation p.R284H 0.38 deleterious_low_confidence(0.02) possibly_damaging(0.601) TCGA-70-6723-01 2 111399373 111399373 T G BUB1 Missense_Mutation p.K824T 0.20 deleterious(0) possibly_damaging(0.527) TCGA-70-6723-01 2 1653341 1653341 G T PXDN Missense_Mutation p.F737L 0.10 deleterious(0.03) possibly_damaging(0.78) TCGA-70-6723-01 2 168102627 168102627 T A XIRP2 Missense_Mutation p.D1575E 0.25 possibly_damaging(0.72) TCGA-70-6723-01 2 177015104 177015104 G A HOXD3 5'Flank 0.29 TCGA-70-6723-01 2 179528601 179528601 G A TTN Silent p.R12131R 0.20 TCGA-70-6723-01 2 185801424 185801424 C A ZNF804A Missense_Mutation p.S434Y 0.42 deleterious(0.03) possibly_damaging(0.691) TCGA-70-6723-01 2 201746158 201746158 T A PPIL3 Missense_Mutation p.S80C 0.78 deleterious(0.03) benign(0.048) TCGA-70-6723-01 2 27601720 27601720 G A ZNF513 Missense_Mutation p.P138L 0.21 tolerated(0.29) benign(0.002) TCGA-70-6723-01 2 32168371 32168371 G - MEMO1 Frame_Shift_Del p.H49Mfs*113 0.37 TCGA-70-6723-01 2 33246095 33246095 C T LTBP1 Missense_Mutation p.P229S 0.40 tolerated(0.31) benign(0.003) TCGA-70-6723-01 2 36726430 36726435 GACTGC - CRIM1 In_Frame_Del p.D481_C482del 0.38 TCGA-70-6723-01 2 46842099 46842099 T C PIGF Missense_Mutation p.K69E 0.52 tolerated(0.09) benign(0.278) TCGA-70-6723-01 2 48602579 48602579 A G FOXN2 Silent p.K431K 0.62 TCGA-70-6723-01 2 49295406 49295406 C T FSHR Missense_Mutation p.R59Q 0.46 tolerated(0.25) benign(0.002) TCGA-70-6723-01 2 61333753 61333753 G A KIAA1841 Missense_Mutation p.E523K 0.46 deleterious(0.03) benign(0.133) TCGA-70-6723-01 2 74605229 74605229 G A DCTN1 Silent p.G59G 0.50 TCGA-70-6723-01 2 99438711 99438711 C A KIAA1211L Silent p.P675P 0.37 TCGA-70-6723-01 3 105250904 105250904 A G ALCAM Silent p.L151L 0.81 TCGA-70-6723-01 3 120053955 120053955 T A LRRC58 Missense_Mutation p.N221Y 0.81 deleterious(0) probably_damaging(1) TCGA-70-6723-01 3 164735558 164735558 T A SI Missense_Mutation p.Q1208H 0.16 deleterious(0) probably_damaging(0.995) TCGA-70-6723-01 3 167402119 167402119 G C PDCD10 Missense_Mutation p.Q206E 0.03 tolerated(0.37) benign(0) TCGA-70-6723-01 3 168269673 168269673 G A MIR551B RNA 0.05 TCGA-70-6723-01 3 168834261 168834261 C A MECOM Missense_Mutation p.A344S 0.22 tolerated(0.8) possibly_damaging(0.702) TCGA-70-6723-01 3 170843789 170843789 G A TNIK Missense_Mutation p.P642L 0.05 deleterious(0.03) probably_damaging(0.999) TCGA-70-6723-01 4 113539801 113539801 C A C4orf21 Missense_Mutation p.G466V 0.80 tolerated(0.08) benign(0.003) TCGA-70-6723-01 4 156651263 156651263 C T GUCY1A3 Silent p.P651P 0.86 TCGA-70-6723-01 4 183960001 183960001 A G FAM92A1P2 RNA 0.64 TCGA-70-6723-01 4 96104068 96104068 G A UNC5C Missense_Mutation p.L811F 0.43 deleterious(0) probably_damaging(0.917) TCGA-70-6723-01 5 112197008 112197008 G T SRP19 5'UTR 0.51 TCGA-70-6723-01 5 131310653 131310653 A C ACSL6 Missense_Mutation p.F334C 0.64 tolerated(0.09) possibly_damaging(0.547) TCGA-70-6723-01 5 140221314 140221314 A G PCDHA8 Silent p.K136K 0.42 TCGA-70-6723-01 5 140788883 140788883 C A PCDHGB6 Silent p.R372R 0.41 TCGA-70-6723-01 5 149584177 149584177 C T SLC6A7 Missense_Mutation p.A472V 0.05 tolerated(0.22) benign(0.001) TCGA-70-6723-01 5 149740740 149740740 G T TCOF1 Missense_Mutation p.V44L 0.44 deleterious(0.01) possibly_damaging(0.595) TCGA-70-6723-01 5 156592796 156592796 C A FAM71B Silent p.V128V 0.39 TCGA-70-6723-01 5 156747731 156747731 G C CYFIP2 Missense_Mutation p.C505S 0.43 tolerated(0.31) benign(0.027) TCGA-70-6723-01 5 168096991 168096991 T A SLIT3 Missense_Mutation p.H1378L 0.50 tolerated(0.4) benign(0) TCGA-70-6723-01 5 169015404 169015404 A - SPDL1 5'UTR 0.30 TCGA-70-6723-01 5 180625213 180625213 G T TRIM7 Missense_Mutation p.L332I 0.40 deleterious(0.01) probably_damaging(0.979) TCGA-70-6723-01 5 41017993 41017993 T C MROH2B Missense_Mutation p.Q948R 0.75 tolerated(0.09) benign(0.02) TCGA-70-6723-01 5 64905275 64905275 G A TRIM23 Missense_Mutation p.T280I 0.45 deleterious(0.01) benign(0.174) TCGA-70-6723-01 5 80515598 80515598 G C RASGRF2 Splice_Site p.X1207_splice 0.38 TCGA-70-6723-01 5 95748167 95748167 G C PCSK1 Missense_Mutation p.T246R 0.53 deleterious(0) probably_damaging(0.999) TCGA-70-6723-01 6 111995783 111995783 T C FYN Missense_Mutation p.R442G 0.86 tolerated(0.09) benign(0.087) TCGA-70-6723-01 6 136468511 136468511 T C PDE7B Silent p.I63I 0.88 TCGA-70-6723-01 6 34838857 34838857 G C UHRF1BP1 Missense_Mutation p.M1315I 0.96 tolerated(0.09) benign(0.241) TCGA-70-6723-01 6 49696477 49696477 T A CRISP3 Missense_Mutation p.K258M 0.96 tolerated(0.05) possibly_damaging(0.904) TCGA-70-6723-01 6 84865079 84865079 C T KIAA1009 Missense_Mutation p.G978S 0.11 tolerated(0.12) benign(0.2) TCGA-70-6723-01 7 123142697 123142697 C T IQUB Missense_Mutation p.G326E 0.28 deleterious(0) probably_damaging(0.931) TCGA-70-6723-01 7 135073535 135073535 C T CNOT4 Intron 0.06 TCGA-70-6723-01 7 141768484 141768484 G A MGAM Intron 0.04 TCGA-70-6723-01 7 142458536 142458536 G T PRSS1 Missense_Mutation p.W57C 0.42 deleterious(0.01) probably_damaging(0.995) TCGA-70-6723-01 7 31855724 31855724 C A PDE1C Missense_Mutation p.A603S 0.33 tolerated(0.53) benign(0.194) TCGA-70-6723-01 7 4798980 4798980 C G FOXK1 Missense_Mutation p.P484A 0.50 deleterious(0.02) possibly_damaging(0.519) TCGA-70-6723-01 7 64452696 64452696 G C ERV3-1 Missense_Mutation p.L237V 0.16 tolerated(0.89) benign(0.062) TCGA-70-6723-01 7 73787301 73787301 G A CLIP2 Missense_Mutation p.E474K 0.30 deleterious(0.01) benign(0.128) TCGA-70-6723-01 8 107719314 107719314 A G OXR1 Missense_Mutation p.Q523R 0.40 tolerated(0.26) benign(0.356) TCGA-70-6723-01 8 113256656 113256656 T A CSMD3 Missense_Mutation p.N3457Y 0.53 deleterious(0.03) benign(0.389) TCGA-70-6723-01 8 113256659 113256659 C G CSMD3 Missense_Mutation p.D3456H 0.51 deleterious(0) possibly_damaging(0.836) TCGA-70-6723-01 8 124132320 124132320 T A TBC1D31 Missense_Mutation p.S488T 0.58 deleterious(0.04) probably_damaging(0.983) TCGA-70-6723-01 8 133844622 133844622 A G PHF20L1 Silent p.L629L 0.13 TCGA-70-6723-01 8 56985729 56985729 G C RPS20 Missense_Mutation p.P94A 0.15 deleterious(0.02) possibly_damaging(0.643) TCGA-70-6723-01 9 118997489 118997489 C T PAPPA Missense_Mutation p.H769Y 0.69 tolerated(0.14) benign(0.152) TCGA-70-6723-01 9 130911868 130911868 G T LCN2 Missense_Mutation p.D22Y 0.28 deleterious(0) benign(0.129) TCGA-70-6723-01 9 18950777 18950777 A G FAM154A Missense_Mutation p.M66T 0.86 deleterious(0) possibly_damaging(0.864) TCGA-70-6723-01 9 37729734 37729734 C A FRMPD1 Missense_Mutation p.L208I 0.85 deleterious(0) possibly_damaging(0.896) TCGA-70-6723-01 X 100117172 100117172 C T NOX1 Silent p.G264G 0.95 TCGA-70-6723-01 X 100604918 100604918 T G BTK Missense_Mutation p.K645N 0.91 tolerated(0.25) benign(0.061) TCGA-70-6723-01 X 111195615 111195615 A T TRPC5 Missense_Mutation p.S12T 0.91 deleterious_low_confidence(0.01) possibly_damaging(0.576) TCGA-70-6723-01 X 26157145 26157145 C A MAGEB18 Missense_Mutation p.R15S 0.60 deleterious(0) probably_damaging(0.982) TCGA-70-6723-01 X 26157185 26157185 C A MAGEB18 Missense_Mutation p.T28K 0.76 deleterious(0.01) benign(0.421) TCGA-70-6723-01 X 32662275 32662275 C G DMD Missense_Mutation p.R435S 0.86 possibly_damaging(0.774) TCGA-70-6723-01 X 33229480 33229480 T C DMD 5'UTR 0.78 TCGA-70-6723-01 X 40562733 40562733 T C MED14 Silent p.L458L 0.89 TCGA-70-6723-01 X 55033379 55033379 G C APEX2 Silent p.T356T 0.85 TCGA-70-6723-01 X 73071409 73071409 C T XIST RNA 0.47 TCGA-70-6723-01 X 92927282 92927282 G T NAP1L3 Nonsense_Mutation p.S341* 0.89 TCGA-77-6842-01 10 1142199 1142199 C G WDR37 Intron 0.19 TCGA-77-6842-01 10 119029876 119029876 G A SLC18A2 Missense_Mutation p.G448R 0.22 deleterious(0) probably_damaging(0.967) TCGA-77-6842-01 10 124361519 124361519 A G DMBT1 Missense_Mutation p.I1184V 0.19 deleterious(0) unknown(0) TCGA-77-6842-01 10 124395559 124395559 C T DMBT1 Missense_Mutation p.R2072C 0.22 tolerated(0.07) benign(0.009) TCGA-77-6842-01 10 131640444 131640444 G A EBF3 Silent p.G427G 0.22 TCGA-77-6842-01 10 135165553 135165553 C A PRAP1 Missense_Mutation p.D57E 0.24 tolerated(0.17) benign(0.058) TCGA-77-6842-01 10 15145673 15145673 T A RPP38 Silent p.V120V 0.27 TCGA-77-6842-01 10 17905645 17905645 C A MRC1L1 Missense_Mutation p.T579N 0.35 possibly_damaging(0.461) TCGA-77-6842-01 10 17905646 17905646 C T MRC1L1 Silent p.T579T 0.36 TCGA-77-6842-01 10 28879759 28879759 G A WAC Missense_Mutation p.G203E 0.24 tolerated(0.31) possibly_damaging(0.763) TCGA-77-6842-01 10 37508421 37508421 A G ANKRD30A Missense_Mutation p.K1205E 0.14 deleterious(0.02) possibly_damaging(0.636) TCGA-77-6842-01 10 45644309 45644309 C A RP11-445N18.7 RNA 0.19 TCGA-77-6842-01 10 45644310 45644310 C A RP11-445N18.7 RNA 0.16 TCGA-77-6842-01 10 46143983 46143983 C A ZFAND4 Splice_Site p.X110_splice 0.12 TCGA-77-6842-01 10 6470183 6470183 G A PRKCQ Missense_Mutation p.R703W 0.23 deleterious(0) possibly_damaging(0.455) TCGA-77-6842-01 10 73122150 73122150 A G SLC29A3 Missense_Mutation p.K405E 0.24 tolerated(0.85) benign(0.008) TCGA-77-6842-01 10 75519449 75519449 C G SEC24C Silent p.P126P 0.18 TCGA-77-6842-01 10 89624297 89624297 A G PTEN Missense_Mutation p.D24G 0.14 deleterious(0) possibly_damaging(0.761) TCGA-77-6842-01 10 90966673 90966673 T A CH25H Missense_Mutation p.H126L 0.21 tolerated(0.73) benign(0) TCGA-77-6842-01 10 97387244 97387244 C G ALDH18A1 Missense_Mutation p.E345Q 0.20 tolerated(0.86) probably_damaging(0.993) TCGA-77-6842-01 11 103325912 103325912 A G DYNC2H1 Splice_Site p.X4160_splice 0.62 TCGA-77-6842-01 11 106849437 106849437 T A GUCY1A2 Missense_Mutation p.N132I 0.51 tolerated(0.14) benign(0.022) TCGA-77-6842-01 11 107974965 107974965 C A CUL5 Missense_Mutation p.Q733K 0.11 tolerated(0.06) possibly_damaging(0.546) TCGA-77-6842-01 11 1093719 1093719 G A MUC2 Silent p.E1846E 0.07 TCGA-77-6842-01 11 1093720 1093720 T G MUC2 Missense_Mutation p.L1847V 0.07 unknown(0) TCGA-77-6842-01 11 111631732 111631732 C A PPP2R1B Missense_Mutation p.R117L 0.15 deleterious(0) probably_damaging(1) TCGA-77-6842-01 11 121000424 121000424 G T TECTA Silent p.T815T 0.14 TCGA-77-6842-01 11 121016565 121016565 G A TECTA Missense_Mutation p.G1282E 0.45 deleterious(0.02) probably_damaging(0.972) TCGA-77-6842-01 11 124180465 124180465 C G OR8D1 Missense_Mutation p.L66F 0.34 deleterious(0) probably_damaging(0.999) TCGA-77-6842-01 11 124481615 124481615 G C PANX3 Missense_Mutation p.A55P 0.44 deleterious(0.01) probably_damaging(0.938) TCGA-77-6842-01 11 124743270 124743270 G A ROBO3 Missense_Mutation p.G534D 0.55 deleterious(0.02) possibly_damaging(0.745) TCGA-77-6842-01 11 125618575 125618575 T C PATE1 Silent p.L110L 0.11 TCGA-77-6842-01 11 128850494 128850494 C A ARHGAP32 Missense_Mutation p.A630S 0.09 tolerated(0.08) probably_damaging(0.996) TCGA-77-6842-01 11 130332493 130332493 G T ADAMTS15 Missense_Mutation p.V454L 0.20 tolerated(0.27) benign(0.002) TCGA-77-6842-01 11 134054816 134054816 T G NCAPD3 Missense_Mutation p.T773P 0.04 deleterious(0.01) benign(0.372) TCGA-77-6842-01 11 17169093 17169093 T A PIK3C2A Missense_Mutation p.S511C 0.22 deleterious(0) possibly_damaging(0.676) TCGA-77-6842-01 11 17408916 17408916 C T KCNJ11 Silent p.E241E 0.16 TCGA-77-6842-01 11 20178059 20178059 G A DBX1 Silent p.L284L 0.23 TCGA-77-6842-01 11 20652292 20652292 G T SLC6A5 Missense_Mutation p.V519F 0.20 deleterious(0) probably_damaging(0.998) TCGA-77-6842-01 11 31482254 31482254 C G IMMP1L Missense_Mutation p.G38A 0.21 deleterious(0) probably_damaging(1) TCGA-77-6842-01 11 31482255 31482255 C A IMMP1L Nonsense_Mutation p.G38* 0.22 TCGA-77-6842-01 11 32635864 32635864 A G CCDC73 Missense_Mutation p.L667P 0.17 deleterious(0.04) probably_damaging(0.917) TCGA-77-6842-01 11 3380338 3380338 T A ZNF195 3'UTR 0.15 TCGA-77-6842-01 11 36103231 36103231 C T LDLRAD3 Silent p.T74T 0.21 TCGA-77-6842-01 11 51411675 51411675 T A OR4A5 Missense_Mutation p.S241C 0.40 deleterious_low_confidence(0) benign(0.106) TCGA-77-6842-01 11 5411176 5411176 C A OR51M1 Missense_Mutation p.S183Y 0.42 deleterious(0) benign(0.167) TCGA-77-6842-01 11 55861264 55861264 T A OR8I2 Missense_Mutation p.W161R 0.21 tolerated(0.17) benign(0.167) TCGA-77-6842-01 11 56043476 56043476 C G OR5T1 Missense_Mutation p.T121S 0.35 tolerated(0.18) benign(0.082) TCGA-77-6842-01 11 56085945 56085945 T A OR8K3 Missense_Mutation p.L55M 0.19 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-77-6842-01 11 5758380 5758380 G C OR56B1 Missense_Mutation p.A212P 0.06 deleterious(0.01) probably_damaging(0.991) TCGA-77-6842-01 11 57798736 57798736 G C OR6Q1 Missense_Mutation p.Q104H 0.29 deleterious(0.01) probably_damaging(0.986) TCGA-77-6842-01 11 57886614 57886614 G A OR9I1 Silent p.F101F 0.12 TCGA-77-6842-01 11 57982831 57982831 A G OR1S1 Silent p.T205T 0.25 TCGA-77-6842-01 11 60470917 60470917 G - MS4A8 Frame_Shift_Del p.E97Nfs*45 0.41 TCGA-77-6842-01 11 6244978 6244978 A G FAM160A2 Silent p.F213F 0.18 TCGA-77-6842-01 11 78381586 78381586 A T TENM4 Missense_Mutation p.L1935Q 0.05 deleterious(0) possibly_damaging(0.823) TCGA-77-6842-01 11 88300987 88300987 G T GRM5 Missense_Mutation p.L622I 0.09 deleterious(0) probably_damaging(0.999) TCGA-77-6842-01 11 88780659 88780659 G A GRM5 Missense_Mutation p.R128C 0.43 deleterious(0.01) probably_damaging(0.956) TCGA-77-6842-01 11 89424172 89424172 G A FOLH1B RNA 0.37 TCGA-77-6842-01 11 94564621 94564621 G A AMOTL1 Missense_Mutation p.R521Q 0.07 tolerated(0.05) possibly_damaging(0.624) TCGA-77-6842-01 12 104071254 104071254 G A STAB2 Silent p.T890T 0.35 TCGA-77-6842-01 12 117660574 117660574 C A NOS1 Missense_Mutation p.K1341N 0.35 tolerated(0.15) benign(0.021) TCGA-77-6842-01 12 129559309 129559309 G C TMEM132D Missense_Mutation p.P804R 0.29 tolerated(0.34) possibly_damaging(0.543) TCGA-77-6842-01 12 133233825 133233825 C T POLE Missense_Mutation p.R1160H 0.24 deleterious(0) probably_damaging(1) TCGA-77-6842-01 12 13717500 13717500 A G GRIN2B Missense_Mutation p.M891T 0.35 tolerated(0.28) probably_damaging(0.989) TCGA-77-6842-01 12 14827595 14827596 - G GUCY2C Frame_Shift_Ins p.K350Qfs*12 0.19 TCGA-77-6842-01 12 26592167 26592167 C A ITPR2 Missense_Mutation p.R2179L 0.40 deleterious(0.01) possibly_damaging(0.698) TCGA-77-6842-01 12 28116698 28116698 C G PTHLH Missense_Mutation p.R36T 0.30 deleterious(0) probably_damaging(0.909) TCGA-77-6842-01 12 31820657 31820657 G A METTL20 Silent p.L174L 0.23 TCGA-77-6842-01 12 43925939 43925939 A G ADAMTS20 Silent p.D171D 0.31 TCGA-77-6842-01 12 45814859 45814859 G T ANO6 Missense_Mutation p.M762I 0.28 deleterious(0.01) benign(0.012) TCGA-77-6842-01 12 49580523 49580523 C T TUBA1A Missense_Mutation p.D33N 0.27 tolerated_low_confidence(0.07) benign(0.225) TCGA-77-6842-01 12 52309976 52309976 G T ACVRL1 Missense_Mutation p.G402V 0.36 deleterious(0) probably_damaging(1) TCGA-77-6842-01 12 52912742 52912742 T C KRT5 Missense_Mutation p.D253G 0.04 deleterious(0.03) benign(0.306) TCGA-77-6842-01 12 56221240 56221240 C T DNAJC14 Silent p.L401L 0.13 TCGA-77-6842-01 12 57432273 57432273 C A MYO1A Silent p.P561P 0.27 TCGA-77-6842-01 12 57442013 57442013 T A MYO1A Missense_Mutation p.Y32F 0.22 tolerated(1) benign(0.008) TCGA-77-6842-01 12 76461176 76461176 C A NAP1L1 Nonsense_Mutation p.E61* 0.33 TCGA-77-6842-01 12 76461177 76461177 T A NAP1L1 Silent p.V60V 0.32 TCGA-77-6842-01 12 7802289 7802289 G T APOBEC1 Missense_Mutation p.L189I 0.35 tolerated(0.11) probably_damaging(0.997) TCGA-77-6842-01 12 79679692 79679692 G T SYT1 Missense_Mutation p.G98W 0.27 tolerated(0.09) benign(0.005) TCGA-77-6842-01 12 79679693 79679693 G T SYT1 Missense_Mutation p.G98V 0.27 tolerated(0.37) benign(0.065) TCGA-77-6842-01 12 99077002 99077002 A G APAF1 Missense_Mutation p.S710G 0.30 tolerated(0.46) benign(0.005) TCGA-77-6842-01 13 102359209 102359209 G A ITGBL1 Silent p.K412K 0.05 TCGA-77-6842-01 13 108862407 108862407 G A LIG4 Nonsense_Mutation p.Q404* 0.05 TCGA-77-6842-01 13 109318371 109318371 C G MYO16 Missense_Mutation p.R34G 0.54 deleterious(0) probably_damaging(0.962) TCGA-77-6842-01 13 113824726 113824726 G C PROZ Splice_Site p.X214_splice 0.42 TCGA-77-6842-01 13 77844182 77844182 G C MYCBP2 Missense_Mutation p.S364C 0.18 probably_damaging(0.987) TCGA-77-6842-01 13 93879845 93879845 G T GPC6 Missense_Mutation p.D46Y 0.41 deleterious(0.02) possibly_damaging(0.571) TCGA-77-6842-01 13 99578110 99578110 C T DOCK9 Missense_Mutation p.E133K 0.38 deleterious(0.01) possibly_damaging(0.458) TCGA-77-6842-01 14 100809628 100809628 G A WARS Missense_Mutation p.P308L 0.23 deleterious(0) probably_damaging(1) TCGA-77-6842-01 14 102376004 102376004 A G PPP2R5C Silent p.Q441Q 0.55 TCGA-77-6842-01 14 105356001 105356001 C G CEP170B Missense_Mutation p.R1262G 0.18 deleterious(0.01) benign(0.222) TCGA-77-6842-01 14 105931141 105931141 C T MTA1 Missense_Mutation p.P492L 0.39 tolerated(0.84) benign(0.029) TCGA-77-6842-01 14 106452904 106452904 A C IGHV1-2 Missense_Mutation p.S40A 0.50 deleterious(0) possibly_damaging(0.903) TCGA-77-6842-01 14 20768900 20768900 C A TTC5 Missense_Mutation p.A88S 0.51 deleterious(0.02) probably_damaging(0.971) TCGA-77-6842-01 14 60097240 60097240 G T RTN1 Intron 0.50 TCGA-77-6842-01 14 62547652 62547652 A T SYT16 Missense_Mutation p.Q365L 0.58 deleterious(0) probably_damaging(0.917) TCGA-77-6842-01 14 64676108 64676108 A G SYNE2 Intron 0.08 TCGA-77-6842-01 14 65239543 65239543 C T SPTB Missense_Mutation p.E1770K 0.14 deleterious(0.03) probably_damaging(0.995) TCGA-77-6842-01 14 70515733 70515733 C G SLC8A3 Missense_Mutation p.G720R 0.07 tolerated(0.27) possibly_damaging(0.617) TCGA-77-6842-01 14 88654339 88654339 C A KCNK10 Missense_Mutation p.R328L 0.51 deleterious(0.01) probably_damaging(0.935) TCGA-77-6842-01 14 88729618 88729618 G T KCNK10 Silent p.I110I 0.09 TCGA-77-6842-01 14 89041104 89041104 A G ZC3H14 Missense_Mutation p.H310R 0.47 tolerated(0.27) benign(0.062) TCGA-77-6842-01 14 92091351 92091351 C A CATSPERB Silent p.G581G 0.50 TCGA-77-6842-01 15 23049237 23049237 G C NIPA1 Missense_Mutation p.I194M 0.14 deleterious(0) probably_damaging(0.999) TCGA-77-6842-01 15 33999130 33999130 A G RYR3 Missense_Mutation p.Y2165C 0.54 possibly_damaging(0.89) TCGA-77-6842-01 15 45444551 45444551 G C DUOX1 Silent p.R1087R 0.44 TCGA-77-6842-01 15 49037096 49037096 G A CEP152 Missense_Mutation p.P1243L 0.44 deleterious(0.02) probably_damaging(0.999) TCGA-77-6842-01 15 52476878 52476878 T C GNB5 5'UTR 0.49 TCGA-77-6842-01 15 52521424 52521424 T C MYO5C Missense_Mutation p.D1038G 0.44 tolerated(0.13) benign(0.017) TCGA-77-6842-01 15 54529860 54529860 T C UNC13C Missense_Mutation p.I1067T 0.53 tolerated_low_confidence(1) benign(0.007) TCGA-77-6842-01 15 64332418 64332418 T A DAPK2 Nonsense_Mutation p.K15* 0.49 TCGA-77-6842-01 15 80414101 80414101 G C ZFAND6 Missense_Mutation p.D68H 0.17 deleterious(0.04) benign(0.229) TCGA-77-6842-01 15 87089304 87089304 C A AGBL1 Silent p.T873T 0.43 TCGA-77-6842-01 15 88522530 88522530 C A NTRK3 Intron 0.51 TCGA-77-6842-01 15 90019997 90019997 C T RHCG Missense_Mutation p.V434I 0.40 tolerated(0.32) benign(0.03) TCGA-77-6842-01 15 99434840 99434840 G A IGF1R Silent p.S309S 0.23 TCGA-77-6842-01 16 10788468 10788468 C A TEKT5 Missense_Mutation p.R88L 0.10 deleterious(0) probably_damaging(0.98) TCGA-77-6842-01 16 1272315 1272315 G A TPSG1 Missense_Mutation p.R180W 0.22 deleterious(0) benign(0.071) TCGA-77-6842-01 16 19027819 19027819 G T TMC7 Missense_Mutation p.W120L 0.20 deleterious(0.02) benign(0.32) TCGA-77-6842-01 16 31539485 31539485 G T AHSP Missense_Mutation p.D9Y 0.27 deleterious(0) probably_damaging(0.993) TCGA-77-6842-01 16 3190990 3190990 G C ZNF213 Missense_Mutation p.G341A 0.16 deleterious(0.01) benign(0.352) TCGA-77-6842-01 16 46771770 46771770 C A MYLK3 Missense_Mutation p.G285V 0.25 tolerated(0.13) benign(0.215) TCGA-77-6842-01 16 66885442 66885442 T A CA7 Missense_Mutation p.V145E 0.15 deleterious(0) probably_damaging(1) TCGA-77-6842-01 16 67132754 67132754 A G CBFB 3'UTR 0.29 TCGA-77-6842-01 16 70404199 70404199 A G DDX19A Missense_Mutation p.E365G 0.24 tolerated(0.08) possibly_damaging(0.584) TCGA-77-6842-01 16 74517007 74517007 C A GLG1 Silent p.L529L 0.24 TCGA-77-6842-01 16 76509937 76509937 A G CNTNAP4 Missense_Mutation p.H513R 0.28 deleterious(0.02) benign(0.039) TCGA-77-6842-01 16 81301671 81301671 A C BCMO1 Missense_Mutation p.M260L 0.10 tolerated(0.49) benign(0.009) TCGA-77-6842-01 16 9857925 9857925 C T GRIN2A Missense_Mutation p.R1159H 0.06 tolerated(0.35) benign(0.013) TCGA-77-6842-01 16 9862797 9862797 T C GRIN2A Missense_Mutation p.I836V 0.22 tolerated(0.53) benign(0.001) TCGA-77-6842-01 17 10428924 10428924 C G MYH2 Missense_Mutation p.E1461Q 0.12 deleterious(0.04) possibly_damaging(0.882) TCGA-77-6842-01 17 11775053 11775053 C T DNAH9 Missense_Mutation p.R3398W 0.19 probably_damaging(1) TCGA-77-6842-01 17 31355356 31355356 C A ASIC2 Missense_Mutation p.D348Y 0.32 deleterious(0) probably_damaging(0.952) TCGA-77-6842-01 17 32483172 32483172 T G ASIC2 Missense_Mutation p.H127P 0.39 tolerated(0.1) benign(0.012) TCGA-77-6842-01 17 40040489 40040489 T G ACLY Missense_Mutation p.Y704S 0.45 deleterious(0) possibly_damaging(0.49) TCGA-77-6842-01 17 45368540 45368540 C T ITGB3 Intron 0.12 TCGA-77-6842-01 17 53798012 53798012 T G TMEM100 3'UTR 0.29 TCGA-77-6842-01 17 61568688 61568688 G T ACE Missense_Mutation p.R953L 0.33 deleterious(0) probably_damaging(0.993) TCGA-77-6842-01 17 61685207 61685207 G T TACO1 Missense_Mutation p.D247Y 0.38 deleterious(0) probably_damaging(0.968) TCGA-77-6842-01 17 62018250 62018250 C A SCN4A Missense_Mutation p.A1798S 0.40 tolerated_low_confidence(0.85) benign(0) TCGA-77-6842-01 17 62049967 62049967 G A SCN4A Missense_Mutation p.P79S 0.29 deleterious(0) benign(0.247) TCGA-77-6842-01 17 74470140 74470140 C A RHBDF2 Missense_Mutation p.G546W 0.25 deleterious(0) probably_damaging(0.978) TCGA-77-6842-01 17 7574026 7574026 C A TP53 Missense_Mutation p.G334V 0.50 deleterious(0) probably_damaging(0.973) TCGA-77-6842-01 17 76456046 76456046 G A DNAH17 Missense_Mutation p.P3144L 0.10 possibly_damaging(0.84) TCGA-77-6842-01 17 78519570 78519570 G A RPTOR Silent p.Q47Q 0.31 TCGA-77-6842-01 17 8169596 8169596 G T PFAS Missense_Mutation p.V916F 0.44 deleterious(0.01) possibly_damaging(0.619) TCGA-77-6842-01 17 9792712 9792712 G T GLP2R Missense_Mutation p.W451L 0.42 deleterious(0) probably_damaging(0.999) TCGA-77-6842-01 18 23847581 23847581 A T TAF4B Silent p.S197S 0.06 TCGA-77-6842-01 18 29052334 29052334 C A DSG3 Nonsense_Mutation p.S662* 0.45 TCGA-77-6842-01 18 47376021 47376021 C A MYO5B Nonsense_Mutation p.E1411* 0.43 TCGA-77-6842-01 18 61650833 61650833 G A SERPINB8 Missense_Mutation p.D149N 0.44 tolerated(0.11) benign(0.158) TCGA-77-6842-01 18 77107787 77107787 G C ATP9B Silent p.S900S 0.24 TCGA-77-6842-01 19 10283799 10283799 C A DNMT1 Silent p.T245T 0.10 TCGA-77-6842-01 19 1364518 1364518 G A MUM1 Silent p.S409S 0.19 TCGA-77-6842-01 19 15918286 15918286 C T OR10H1 Missense_Mutation p.A188T 0.14 deleterious(0.03) possibly_damaging(0.654) TCGA-77-6842-01 19 18188344 18188344 G T IL12RB1 Silent p.P177P 0.24 TCGA-77-6842-01 19 22156728 22156728 T C ZNF208 Missense_Mutation p.K370E 0.16 tolerated(0.24) probably_damaging(0.985) TCGA-77-6842-01 19 22941455 22941455 T C ZNF99 Missense_Mutation p.H419R 0.33 deleterious(0) possibly_damaging(0.813) TCGA-77-6842-01 19 23405876 23405876 C A ZNF724P Nonsense_Mutation p.E391* 0.13 TCGA-77-6842-01 19 37382468 37382468 C G ZNF829 Missense_Mutation p.D490H 0.33 deleterious(0.02) benign(0.011) TCGA-77-6842-01 19 38189415 38189415 C - ZNF607 Frame_Shift_Del p.K540Sfs*184 0.11 TCGA-77-6842-01 19 40392596 40392596 C G FCGBP Silent p.P2636P 0.50 TCGA-77-6842-01 19 40420075 40420075 C T FCGBP Silent p.T973T 0.45 TCGA-77-6842-01 19 40486221 40486221 C G PSMC4 Missense_Mutation p.T316S 0.18 tolerated(0.28) benign(0.302) TCGA-77-6842-01 19 4231230 4231230 C T EBI3 Missense_Mutation p.A37V 0.18 deleterious(0) possibly_damaging(0.792) TCGA-77-6842-01 19 49357518 49357518 C A PLEKHA4 Missense_Mutation p.G351C 0.08 deleterious(0) probably_damaging(1) TCGA-77-6842-01 19 52447848 52447848 G T ZNF613 Missense_Mutation p.G238W 0.10 deleterious(0) possibly_damaging(0.863) TCGA-77-6842-01 19 53740429 53740429 A G ZNF677 Silent p.C517C 0.24 TCGA-77-6842-01 19 54705065 54705065 C G RPS9 Missense_Mutation p.R5G 0.15 deleterious(0.03) benign(0.104) TCGA-77-6842-01 19 54849485 54849485 G T LILRA4 Missense_Mutation p.S126Y 0.47 deleterious(0) probably_damaging(0.996) TCGA-77-6842-01 19 55085904 55085904 G T LILRA2 Missense_Mutation p.W69C 0.15 deleterious(0.01) probably_damaging(0.941) TCGA-77-6842-01 19 56321364 56321364 G T NLRP11 Silent p.A204A 0.11 TCGA-77-6842-01 19 56329360 56329360 C G NLRP11 Missense_Mutation p.E61Q 0.41 deleterious(0.04) probably_damaging(0.991) TCGA-77-6842-01 19 7806450 7806450 C T CD209 3'UTR 0.38 TCGA-77-6842-01 19 9059088 9059088 G A MUC16 Missense_Mutation p.S9453F 0.34 unknown(0) TCGA-77-6842-01 1 102270217 102270217 G T OLFM3 Silent p.P318P 0.22 TCGA-77-6842-01 1 115524083 115524083 G C SYCP1 Missense_Mutation p.D837H 0.05 deleterious(0.04) possibly_damaging(0.875) TCGA-77-6842-01 1 118477233 118477233 C G WDR3 Missense_Mutation p.F103L 0.19 tolerated(0.24) probably_damaging(1) TCGA-77-6842-01 1 148344736 148344736 T C NBPF20 Missense_Mutation p.E61G 0.08 benign(0.174) TCGA-77-6842-01 1 152084687 152084687 C G TCHH Missense_Mutation p.E336Q 0.12 unknown(0) TCGA-77-6842-01 1 152187859 152187859 G C HRNR Silent p.G2082G 0.38 TCGA-77-6842-01 1 154794600 154794600 C T KCNN3 Missense_Mutation p.G332S 0.13 tolerated(0.1) probably_damaging(0.999) TCGA-77-6842-01 1 158669945 158669945 T G OR6K2 Silent p.P166P 0.35 TCGA-77-6842-01 1 158943551 158943551 C A PYHIN1 Missense_Mutation p.P492T 0.15 possibly_damaging(0.641) TCGA-77-6842-01 1 158943552 158943552 C A PYHIN1 Missense_Mutation p.P492H 0.15 possibly_damaging(0.893) TCGA-77-6842-01 1 167096167 167096167 T C DUSP27 Missense_Mutation p.V600A 0.42 tolerated(0.05) benign(0.024) TCGA-77-6842-01 1 172007503 172007503 C A DNM3 Missense_Mutation p.N298K 0.35 deleterious(0.04) benign(0.062) TCGA-77-6842-01 1 17295745 17295745 G C CROCC Missense_Mutation p.Q1737H 0.26 benign(0.387) TCGA-77-6842-01 1 1735941 1735941 C T GNB1 Missense_Mutation p.G116D 0.19 deleterious(0) probably_damaging(0.995) TCGA-77-6842-01 1 175348715 175348715 C G TNR Missense_Mutation p.G646R 0.36 deleterious(0.01) probably_damaging(1) TCGA-77-6842-01 1 176734914 176734914 A G PAPPA2 Missense_Mutation p.T1422A 0.17 tolerated(0.12) benign(0.015) TCGA-77-6842-01 1 17981172 17981172 G - ARHGEF10L Frame_Shift_Del p.G813Vfs*32 0.44 TCGA-77-6842-01 1 181022729 181022729 G T MR1 Missense_Mutation p.V301L 0.34 tolerated(0.2) benign(0.041) TCGA-77-6842-01 1 183556090 183556090 C T NCF2 Missense_Mutation p.R66Q 0.15 tolerated(0.27) benign(0.01) TCGA-77-6842-01 1 184764370 184764370 C A FAM129A Missense_Mutation p.G843V 0.15 tolerated_low_confidence(0.08) benign(0.015) TCGA-77-6842-01 1 193150274 193150274 A G B3GALT2 Missense_Mutation p.I140T 0.34 deleterious(0) benign(0.355) TCGA-77-6842-01 1 200017436 200017436 C A NR5A2 Silent p.I200I 0.37 TCGA-77-6842-01 1 211652542 211652542 A G RD3 Missense_Mutation p.W142R 0.44 tolerated(0.1) probably_damaging(0.991) TCGA-77-6842-01 1 220089208 220089208 G T SLC30A10 Silent p.A347A 0.40 TCGA-77-6842-01 1 220089209 220089209 G T SLC30A10 Missense_Mutation p.A347D 0.40 deleterious(0) probably_damaging(0.999) TCGA-77-6842-01 1 227922485 227922485 C A JMJD4 Missense_Mutation p.V145F 0.36 deleterious(0.04) possibly_damaging(0.77) TCGA-77-6842-01 1 228246697 228246697 G C WNT3A Missense_Mutation p.S197T 0.19 tolerated(0.26) benign(0.102) TCGA-77-6842-01 1 229438696 229438696 C T RAB4A Missense_Mutation p.A210V 0.39 tolerated(0.08) benign(0.007) TCGA-77-6842-01 1 237886465 237886465 A G RYR2 Missense_Mutation p.Y3531C 0.20 possibly_damaging(0.827) TCGA-77-6842-01 1 238045813 238045813 C G ZP4 Missense_Mutation p.G511A 0.31 tolerated(0.12) benign(0.194) TCGA-77-6842-01 1 240071384 240071384 T A CHRM3 Silent p.V211V 0.15 TCGA-77-6842-01 1 247588877 247588877 C G NLRP3 Missense_Mutation p.S711C 0.23 tolerated(0.13) benign(0.265) TCGA-77-6842-01 1 248308930 248308930 G T OR2M5 Missense_Mutation p.V161L 0.36 tolerated(0.1) benign(0.213) TCGA-77-6842-01 1 248684963 248684963 A G OR2G6 Missense_Mutation p.N6D 0.20 tolerated(0.66) benign(0.001) TCGA-77-6842-01 1 248757005 248757005 G C OR2T10 Nonsense_Mutation p.S22* 0.34 TCGA-77-6842-01 1 25599054 25599054 C A RHD Missense_Mutation p.P6T 0.26 tolerated(0.15) possibly_damaging(0.902) TCGA-77-6842-01 1 25812155 25812155 G T TMEM57 Missense_Mutation p.Q455H 0.42 tolerated(0.17) probably_damaging(0.961) TCGA-77-6842-01 1 28209199 28209199 T G THEMIS2 Missense_Mutation p.V455G 0.05 deleterious(0) probably_damaging(0.976) TCGA-77-6842-01 1 29185558 29185558 C T OPRD1 Missense_Mutation p.A107V 0.41 tolerated(0.34) benign(0.116) TCGA-77-6842-01 1 29344942 29344942 A G EPB41 Missense_Mutation p.H371R 0.21 deleterious(0) probably_damaging(0.998) TCGA-77-6842-01 1 32133784 32133784 C A COL16A1 Silent p.T1095T 0.25 TCGA-77-6842-01 1 32384698 32384698 G C PTP4A2 5'UTR 0.13 TCGA-77-6842-01 1 45293819 45293819 C T PTCH2 Missense_Mutation p.G585E 0.21 tolerated(0.29) benign(0.001) TCGA-77-6842-01 1 47691505 47691505 C A TAL1 Missense_Mutation p.R19L 0.17 deleterious_low_confidence(0.02) benign(0.02) TCGA-77-6842-01 1 6212558 6212558 C A CHD5 Missense_Mutation p.G262W 0.09 deleterious(0) possibly_damaging(0.639) TCGA-77-6842-01 1 66798114 66798114 C A PDE4B Intron 0.20 TCGA-77-6842-01 1 70257803 70257803 T A LRRC7 Silent p.A89A 0.21 TCGA-77-6842-01 1 75037666 75037666 A T C1orf173 Missense_Mutation p.L1243Q 0.18 tolerated(0.3) benign(0.008) TCGA-77-6842-01 1 86921043 86921043 C A CLCA2 Missense_Mutation p.P889T 0.35 deleterious(0.02) possibly_damaging(0.448) TCGA-77-6842-01 1 91781506 91781506 C A HFM1 Silent p.T1002T 0.15 TCGA-77-6842-01 20 34099235 34099235 A G CEP250 Missense_Mutation p.K2370R 0.53 benign(0.045) TCGA-77-6842-01 20 40033322 40033322 C A CHD6 Nonsense_Mutation p.E2687* 0.11 TCGA-77-6842-01 20 43850967 43850967 A G SEMG2 Missense_Mutation p.S232G 0.17 tolerated(0.19) benign(0.027) TCGA-77-6842-01 20 43943146 43943146 C A RBPJL Missense_Mutation p.P321T 0.51 tolerated(0.23) benign(0.006) TCGA-77-6842-01 20 50290727 50290727 G A ATP9A Silent p.R334R 0.31 TCGA-77-6842-01 20 54940163 54940163 G T FAM210B Silent p.G69G 0.20 TCGA-77-6842-01 20 56186893 56186893 T A ZBP1 Missense_Mutation p.H255L 0.20 tolerated(0.13) probably_damaging(0.954) TCGA-77-6842-01 20 865945 865945 G A ANGPT4 Missense_Mutation p.A204V 0.44 tolerated(0.12) possibly_damaging(0.492) TCGA-77-6842-01 21 10862821 10862821 C A IGHV1OR21-1 Silent p.V39V 0.08 TCGA-77-6842-01 21 28305217 28305217 G A ADAMTS5 Silent p.I612I 0.26 TCGA-77-6842-01 21 34113875 34113875 C A PAXBP1 Intron 0.67 TCGA-77-6842-01 21 34713448 34713448 A G IFNAR1 Missense_Mutation p.Y115C 0.33 tolerated(0.17) benign(0.001) TCGA-77-6842-01 21 37713713 37713713 G A MORC3 Missense_Mutation p.E209K 0.09 deleterious(0) probably_damaging(0.991) TCGA-77-6842-01 21 38877685 38877685 G T DYRK1A Missense_Mutation p.A447S 0.54 tolerated(0.54) benign(0.025) TCGA-77-6842-01 22 18028171 18028171 G T CECR2 Missense_Mutation p.G1044V 0.51 deleterious_low_confidence(0.01) possibly_damaging(0.871) TCGA-77-6842-01 22 21328813 21328813 G C AIFM3 Splice_Site p.X171_splice 0.14 TCGA-77-6842-01 22 22892713 22892713 G T PRAME Missense_Mutation p.Q130K 0.43 tolerated(0.08) possibly_damaging(0.559) TCGA-77-6842-01 22 23495314 23495314 C T RAB36 Missense_Mutation p.L174F 0.12 deleterious(0.05) possibly_damaging(0.791) TCGA-77-6842-01 22 24095267 24095267 C A VPREB3 Missense_Mutation p.W56C 0.15 deleterious(0) probably_damaging(1) TCGA-77-6842-01 22 26707910 26707910 A T SEZ6L Missense_Mutation p.T620S 0.47 tolerated(0.15) benign(0.158) TCGA-77-6842-01 22 32555052 32555052 A G C22orf42 Silent p.L51L 0.14 TCGA-77-6842-01 22 39760250 39760250 C A SYNGR1 Intron 0.25 TCGA-77-6842-01 2 103057812 103057812 C - IL18RAP Frame_Shift_Del p.E258Rfs*6 0.35 TCGA-77-6842-01 2 10937259 10937259 A T PDIA6 Missense_Mutation p.F98L 0.13 deleterious(0) probably_damaging(0.987) TCGA-77-6842-01 2 113286386 113286386 C T TTL 3'UTR 0.28 TCGA-77-6842-01 2 119727720 119727720 T A MARCO Missense_Mutation p.L77Q 0.20 tolerated(0.05) probably_damaging(0.979) TCGA-77-6842-01 2 121047208 121047208 G T RALB Missense_Mutation p.V126L 0.19 deleterious(0.03) probably_damaging(1) TCGA-77-6842-01 2 127818170 127818170 A T BIN1 Intron 0.19 TCGA-77-6842-01 2 128622540 128622540 A G AMMECR1L 3'UTR 0.59 TCGA-77-6842-01 2 132277146 132277146 G - AC093838.4 RNA 0.43 TCGA-77-6842-01 2 135620972 135620972 C A ACMSD Missense_Mutation p.P86H 0.40 deleterious(0) probably_damaging(0.972) TCGA-77-6842-01 2 135965211 135965211 C T ZRANB3 Silent p.R934R 0.20 TCGA-77-6842-01 2 141298550 141298550 C T LRP1B Missense_Mutation p.R2502K 0.09 benign(0.22) TCGA-77-6842-01 2 141680541 141680541 C A LRP1B Missense_Mutation p.W1104C 0.24 benign(0.252) TCGA-77-6842-01 2 141680542 141680542 C A LRP1B Missense_Mutation p.W1104L 0.24 benign(0.01) TCGA-77-6842-01 2 144314054 144314054 G T ARHGAP15 Nonsense_Mutation p.E335* 0.34 TCGA-77-6842-01 2 145158820 145158820 C A ZEB2 Missense_Mutation p.G288C 0.21 deleterious(0) probably_damaging(1) TCGA-77-6842-01 2 150432255 150432255 T C MMADHC Silent p.V193V 0.07 TCGA-77-6842-01 2 152226686 152226686 G C TNFAIP6 Missense_Mutation p.E183Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-77-6842-01 2 153519667 153519667 G A PRPF40A Missense_Mutation p.A703V 0.17 deleterious(0.02) possibly_damaging(0.483) TCGA-77-6842-01 2 160673373 160673373 C - LY75-CD302 Frame_Shift_Del p.E1442Kfs*4 0.36 TCGA-77-6842-01 2 162660996 162660996 G T SLC4A10 Missense_Mutation p.L56F 0.10 tolerated(0.65) probably_damaging(0.997) TCGA-77-6842-01 2 163250983 163250983 G C KCNH7 Missense_Mutation p.R876G 0.09 tolerated(0.63) benign(0.003) TCGA-77-6842-01 2 170090095 170090095 T G LRP2 Missense_Mutation p.I1642L 0.41 benign(0.001) TCGA-77-6842-01 2 170151127 170151127 G A LRP2 Missense_Mutation p.S174L 0.12 possibly_damaging(0.78) TCGA-77-6842-01 2 176965097 176965097 C - HOXD12 Frame_Shift_Del p.D191Tfs*49 0.41 TCGA-77-6842-01 2 179433153 179433153 G A TTN Silent p.D25902D 0.28 TCGA-77-6842-01 2 179577516 179577516 A G TTN Missense_Mutation p.F9079S 0.06 TCGA-77-6842-01 2 179585137 179585137 C G TTN Silent p.T7784T 0.20 TCGA-77-6842-01 2 179654093 179654093 A T TTN Missense_Mutation p.H690Q 0.14 TCGA-77-6842-01 2 1891304 1891304 T A MYT1L Missense_Mutation p.K864N 0.41 deleterious(0) possibly_damaging(0.848) TCGA-77-6842-01 2 189406152 189406152 T G GULP1 Intron 0.10 TCGA-77-6842-01 2 192250671 192250671 A G MYO1B Missense_Mutation p.D472G 0.43 deleterious(0) possibly_damaging(0.803) TCGA-77-6842-01 2 196883955 196883955 G C DNAH7 Missense_Mutation p.H270D 0.33 tolerated(0.15) benign(0.001) TCGA-77-6842-01 2 197511160 197511160 G T CCDC150 Missense_Mutation p.M36I 0.35 tolerated(0.08) benign(0.104) TCGA-77-6842-01 2 197943360 197943360 T A ANKRD44 Missense_Mutation p.N573Y 0.52 tolerated_low_confidence(0.09) benign(0) TCGA-77-6842-01 2 206992534 206992534 C G NDUFS1 Missense_Mutation p.R638T 0.12 deleterious(0) probably_damaging(0.996) TCGA-77-6842-01 2 217026713 217026713 G T XRCC5 Silent p.V592V 0.42 TCGA-77-6842-01 2 219736542 219736542 G T WNT6 Splice_Site p.X212_splice 0.45 TCGA-77-6842-01 2 219855575 219855575 C A CRYBA2 Missense_Mutation p.A149S 0.25 tolerated(0.07) possibly_damaging(0.898) TCGA-77-6842-01 2 220405282 220405282 C A CHPF Missense_Mutation p.R384L 0.33 tolerated(0.19) benign(0.026) TCGA-77-6842-01 2 227662210 227662210 C G IRS1 Silent p.S415S 0.20 TCGA-77-6842-01 2 228881983 228881983 C T SPHKAP Missense_Mutation p.R1196K 0.18 tolerated(0.06) benign(0.224) TCGA-77-6842-01 2 231941804 231941804 G A PSMD1 Missense_Mutation p.M333I 0.11 tolerated(0.3) benign(0.002) TCGA-77-6842-01 2 242007260 242007260 G A SNED1 Missense_Mutation p.R1031H 0.15 tolerated(0.5) benign(0.013) TCGA-77-6842-01 2 26652610 26652610 C A DRC1 Missense_Mutation p.R219S 0.13 deleterious(0) possibly_damaging(0.689) TCGA-77-6842-01 2 27429780 27429780 G A SLC5A6 Nonsense_Mutation p.R142* 0.27 TCGA-77-6842-01 2 32656044 32656044 G T BIRC6 Missense_Mutation p.C1045F 0.21 probably_damaging(0.991) TCGA-77-6842-01 2 32656045 32656045 C T BIRC6 Silent p.C1045C 0.21 TCGA-77-6842-01 2 32743988 32743988 A G BIRC6 Silent p.L3866L 0.21 TCGA-77-6842-01 2 48915576 48915576 C A LHCGR Missense_Mutation p.V454F 0.37 deleterious(0) probably_damaging(0.999) TCGA-77-6842-01 2 61456047 61456047 A G USP34 Missense_Mutation p.M2428T 0.23 deleterious(0) possibly_damaging(0.718) TCGA-77-6842-01 2 65495999 65495999 T G ACTR2 3'UTR 0.50 TCGA-77-6842-01 2 72362455 72362455 G C CYP26B1 Missense_Mutation p.H175D 0.33 tolerated(0.58) benign(0.016) TCGA-77-6842-01 2 73829482 73829482 G T ALMS1 Silent p.P4094P 0.31 TCGA-77-6842-01 2 79348696 79348696 G A REG1A Missense_Mutation p.A25T 0.30 tolerated(0.51) benign(0) TCGA-77-6842-01 3 10331756 10331756 C G GHRL Splice_Site p.X36_splice 0.27 TCGA-77-6842-01 3 111602855 111602855 G A PHLDB2 Intron 0.20 TCGA-77-6842-01 3 113699588 113699588 A G KIAA1407 Missense_Mutation p.I739T 0.33 tolerated(0.45) benign(0.006) TCGA-77-6842-01 3 115439802 115439802 C A GAP43 3'UTR 0.39 TCGA-77-6842-01 3 115439822 115439822 C A GAP43 3'UTR 0.37 TCGA-77-6842-01 3 134898749 134898749 C T EPHB1 Missense_Mutation p.P603S 0.16 deleterious(0) probably_damaging(1) TCGA-77-6842-01 3 142032012 142032012 C A XRN1 Missense_Mutation p.W1541C 0.38 tolerated_low_confidence(0.23) benign(0.007) TCGA-77-6842-01 3 14939591 14939591 C A FGD5 Missense_Mutation p.R1019S 0.36 deleterious(0.04) possibly_damaging(0.776) TCGA-77-6842-01 3 150644582 150644582 C A CLRN1 3'Flank 0.25 TCGA-77-6842-01 3 155206549 155206549 C A PLCH1 Missense_Mutation p.M801I 0.24 deleterious(0) probably_damaging(0.999) TCGA-77-6842-01 3 158537439 158537439 G T MFSD1 Silent p.G267G 0.18 TCGA-77-6842-01 3 159997154 159997154 T A IFT80 Splice_Site p.X555_splice 0.29 TCGA-77-6842-01 3 160965094 160965094 G C NMD3 Missense_Mutation p.M393I 0.21 tolerated(0.28) benign(0.299) TCGA-77-6842-01 3 164773010 164773010 T G SI Missense_Mutation p.Q495P 0.26 deleterious(0.04) benign(0.081) TCGA-77-6842-01 3 164773011 164773011 G A SI Nonsense_Mutation p.Q495* 0.26 TCGA-77-6842-01 3 169548373 169548373 C A LRRIQ4 Missense_Mutation p.H430N 0.19 tolerated(1) benign(0.035) TCGA-77-6842-01 3 172634261 172634261 G A SPATA16 Missense_Mutation p.P450L 0.29 tolerated(0.65) possibly_damaging(0.851) TCGA-77-6842-01 3 179109831 179109831 G A MFN1 Missense_Mutation p.S737N 0.16 tolerated(0.27) possibly_damaging(0.491) TCGA-77-6842-01 3 186006605 186006605 G T DGKG Silent p.P146P 0.13 TCGA-77-6842-01 3 186953673 186953673 T A MASP1 Silent p.G662G 0.11 TCGA-77-6842-01 3 23258794 23258794 C G UBE2E2 Missense_Mutation p.P73R 0.51 deleterious(0.01) probably_damaging(0.934) TCGA-77-6842-01 3 3214492 3214492 G A CRBN Silent p.F165F 0.19 TCGA-77-6842-01 3 87313490 87313490 G T POU1F1 Silent p.I155I 0.42 TCGA-77-6842-01 3 98251959 98251959 A G GPR15 Silent p.%3D 0.30 TCGA-77-6842-01 4 106534618 106534618 G T ARHGEF38 Missense_Mutation p.L154F 0.17 tolerated(0.06) possibly_damaging(0.78) TCGA-77-6842-01 4 121774630 121774630 C A PRDM5 Missense_Mutation p.W81C 0.19 deleterious(0) possibly_damaging(0.907) TCGA-77-6842-01 4 121774631 121774631 C A PRDM5 Missense_Mutation p.W81L 0.19 deleterious(0) benign(0.424) TCGA-77-6842-01 4 123239333 123239333 C G KIAA1109 Missense_Mutation p.Q3568E 0.31 probably_damaging(0.935) TCGA-77-6842-01 4 123275057 123275057 G C KIAA1109 Missense_Mutation p.L4730F 0.21 probably_damaging(0.999) TCGA-77-6842-01 4 126412467 126412467 G T FAT4 Silent p.A4830A 0.21 TCGA-77-6842-01 4 134072933 134072933 G T PCDH10 Silent p.R546R 0.18 TCGA-77-6842-01 4 134072934 134072934 G T PCDH10 Missense_Mutation p.D547Y 0.18 deleterious(0) probably_damaging(0.995) TCGA-77-6842-01 4 146067462 146067462 T C OTUD4 Missense_Mutation p.Y395C 0.34 deleterious(0) possibly_damaging(0.774) TCGA-77-6842-01 4 154217022 154217022 G A TRIM2 Silent p.V448V 0.16 TCGA-77-6842-01 4 155219212 155219212 G A DCHS2 Missense_Mutation p.S1630F 0.22 deleterious(0.04) possibly_damaging(0.544) TCGA-77-6842-01 4 156135751 156135751 T A NPY2R Missense_Mutation p.S220R 0.16 deleterious(0) probably_damaging(0.999) TCGA-77-6842-01 4 158224906 158224906 A G GRIA2 Silent p.Q144Q 0.31 TCGA-77-6842-01 4 164247570 164247570 G C NPY1R Missense_Mutation p.A46G 0.19 deleterious(0.04) possibly_damaging(0.623) TCGA-77-6842-01 4 164394543 164394543 C T TKTL2 Missense_Mutation p.R115Q 0.19 deleterious(0.04) probably_damaging(0.909) TCGA-77-6842-01 4 169433067 169433067 C T PALLD Nonsense_Mutation p.R138* 0.24 TCGA-77-6842-01 4 17528567 17528567 G A CLRN2 Silent p.E187E 0.28 TCGA-77-6842-01 4 184938351 184938351 C T STOX2 Nonsense_Mutation p.R899* 0.28 TCGA-77-6842-01 4 185045362 185045362 G T ENPP6 Missense_Mutation p.T162K 0.36 deleterious(0.01) probably_damaging(0.93) TCGA-77-6842-01 4 186380419 186380419 A G CCDC110 Missense_Mutation p.I441T 0.31 tolerated(0.12) benign(0.008) TCGA-77-6842-01 4 189063478 189063478 G T TRIML1 Nonsense_Mutation p.E193* 0.35 TCGA-77-6842-01 4 3231717 3231717 T C HTT Missense_Mutation p.L2738P 0.21 possibly_damaging(0.905) TCGA-77-6842-01 4 3318510 3318510 G C RGS12 Missense_Mutation p.D205H 0.16 tolerated(0.1) benign(0.048) TCGA-77-6842-01 4 36230755 36230755 C T ARAP2 Silent p.P118P 0.15 TCGA-77-6842-01 4 56759756 56759756 G T EXOC1 Missense_Mutation p.R588L 0.21 tolerated(0.32) benign(0.02) TCGA-77-6842-01 4 57355574 57355574 G A SRP72 Missense_Mutation p.M415I 0.36 tolerated(0.13) benign(0.042) TCGA-77-6842-01 4 69512683 69512683 T C UGT2B15 3'UTR 0.29 TCGA-77-6842-01 4 69682260 69682260 C A UGT2B10 Missense_Mutation p.P175T 0.33 tolerated(0.19) benign(0.021) TCGA-77-6842-01 4 69978308 69978308 G T UGT2B7 Missense_Mutation p.D482Y 0.20 deleterious(0) probably_damaging(0.957) TCGA-77-6842-01 4 73930972 73930972 G C COX18 Nonsense_Mutation p.S198* 0.19 TCGA-77-6842-01 4 77003670 77003670 G A ART3 Missense_Mutation p.E255K 0.29 deleterious(0.03) possibly_damaging(0.887) TCGA-77-6842-01 4 77678057 77678057 G T SHROOM3 Missense_Mutation p.R1722I 0.40 deleterious(0.05) benign(0.062) TCGA-77-6842-01 4 80246372 80246372 G C NAA11 Missense_Mutation p.D220E 0.26 tolerated_low_confidence(0.1) benign(0.417) TCGA-77-6842-01 5 106722944 106722944 T A EFNA5 Missense_Mutation p.E186V 0.44 tolerated(0.15) probably_damaging(0.915) TCGA-77-6842-01 5 106722945 106722945 C G EFNA5 Missense_Mutation p.E186Q 0.50 tolerated(0.12) probably_damaging(0.915) TCGA-77-6842-01 5 112868741 112868741 A T YTHDC2 Missense_Mutation p.R281W 0.43 deleterious(0) probably_damaging(0.999) TCGA-77-6842-01 5 121787029 121787029 C A SNCAIP Missense_Mutation p.S829R 0.52 tolerated(0.24) benign(0.197) TCGA-77-6842-01 5 1325908 1325908 C G CLPTM1L Missense_Mutation p.L368F 0.06 tolerated(0.33) benign(0.06) TCGA-77-6842-01 5 138260942 138260942 C T CTNNA1 Intron 0.49 TCGA-77-6842-01 5 13845044 13845044 G T DNAH5 Missense_Mutation p.L1725I 0.11 benign(0.008) TCGA-77-6842-01 5 140579839 140579839 C T PCDHB11 Silent p.I164I 0.47 TCGA-77-6842-01 5 147051453 147051453 G T JAKMIP2 5'UTR 0.33 TCGA-77-6842-01 5 156456783 156456783 G T HAVCR1 Missense_Mutation p.D352E 0.33 tolerated(0.07) possibly_damaging(0.866) TCGA-77-6842-01 5 16463614 16463614 A G ZNF622 Missense_Mutation p.I288T 0.13 deleterious(0.03) benign(0.262) TCGA-77-6842-01 5 16702692 16702692 C G MYO10 Missense_Mutation p.R839T 0.20 tolerated(0.28) benign(0.136) TCGA-77-6842-01 5 21802312 21802312 G C CDH12 Missense_Mutation p.T407S 0.05 tolerated(0.61) benign(0.091) TCGA-77-6842-01 5 23521247 23521247 G T PRDM9 Missense_Mutation p.G156V 0.11 deleterious_low_confidence(0.02) benign(0.256) TCGA-77-6842-01 5 23526885 23526885 G C PRDM9 Missense_Mutation p.W563S 0.70 tolerated(0.66) benign(0.044) TCGA-77-6842-01 5 33881419 33881419 C T ADAMTS12 Silent p.E98E 0.12 TCGA-77-6842-01 5 33964078 33964078 C A SLC45A2 Missense_Mutation p.W202C 0.06 deleterious(0) probably_damaging(1) TCGA-77-6842-01 5 35740050 35740050 G A SPEF2 Nonsense_Mutation p.W1031* 0.10 TCGA-77-6842-01 5 35740060 35740060 G A SPEF2 Missense_Mutation p.E1035K 0.06 deleterious(0.02) probably_damaging(0.985) TCGA-77-6842-01 5 35740111 35740111 G A SPEF2 Missense_Mutation p.D1052N 0.06 tolerated(0.13) benign(0.081) TCGA-77-6842-01 5 35740298 35740298 G C SPEF2 Missense_Mutation p.D1087H 0.05 deleterious(0) probably_damaging(0.998) TCGA-77-6842-01 5 40999804 40999804 G T MROH2B Silent p.I1520I 0.71 TCGA-77-6842-01 5 41009477 41009477 C T MROH2B Missense_Mutation p.E1109K 0.17 tolerated(0.25) benign(0.064) TCGA-77-6842-01 5 434220 434220 G T AHRR Silent p.P477P 0.67 TCGA-77-6842-01 5 53815098 53815098 A G SNX18 Missense_Mutation p.D439G 0.29 deleterious(0) probably_damaging(0.999) TCGA-77-6842-01 5 87516537 87516537 C G TMEM161B Splice_Site p.X97_splice 0.41 TCGA-77-6842-01 5 94025254 94025254 A C ANKRD32 Missense_Mutation p.K788Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-77-6842-01 6 133078857 133078857 C T VNN2 Missense_Mutation p.E56K 0.09 tolerated(1) benign(0) TCGA-77-6842-01 6 137540458 137540458 G C IFNGR1 Missense_Mutation p.L3V 0.23 tolerated(0.19) benign(0.285) TCGA-77-6842-01 6 144086872 144086872 C T PHACTR2 Missense_Mutation p.P390L 0.12 tolerated_low_confidence(0.16) benign(0.294) TCGA-77-6842-01 6 146126923 146126923 T G FBXO30 Missense_Mutation p.I207L 0.14 tolerated(0.4) benign(0.015) TCGA-77-6842-01 6 146350653 146350653 C A GRM1 5'UTR 0.10 TCGA-77-6842-01 6 146351266 146351266 G T GRM1 Missense_Mutation p.V205F 0.14 deleterious(0) probably_damaging(0.992) TCGA-77-6842-01 6 146720070 146720070 A G GRM1 Missense_Mutation p.Y632C 0.23 deleterious(0) probably_damaging(0.999) TCGA-77-6842-01 6 155579139 155579139 C T TFB1M Missense_Mutation p.R291Q 0.13 tolerated(0.06) benign(0.223) TCGA-77-6842-01 6 157150475 157150475 C G ARID1B Missense_Mutation p.P553A 0.09 probably_damaging(0.997) TCGA-77-6842-01 6 159398666 159398666 T C RSPH3 Silent p.S529S 0.39 TCGA-77-6842-01 6 161071530 161071530 C A LPA Splice_Site p.X17_splice 0.37 TCGA-77-6842-01 6 170143269 170143269 G C TCTE3 Missense_Mutation p.D131E 0.05 tolerated(0.68) probably_damaging(0.998) TCGA-77-6842-01 6 2124918 2124918 C A GMDS Intron 0.23 TCGA-77-6842-01 6 26027344 26027344 C T HIST1H4B Missense_Mutation p.R46Q 0.38 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-77-6842-01 6 26043574 26043574 A T HIST1H2BB Silent p.P104P 0.22 TCGA-77-6842-01 6 29080197 29080197 T C OR2J3 Missense_Mutation p.V177A 0.40 deleterious(0.02) benign(0.168) TCGA-77-6842-01 6 29627200 29627200 G T MOG Nonsense_Mutation p.E65* 0.27 TCGA-77-6842-01 6 31615556 31615556 T C BAG6 Silent p.P206P 0.17 TCGA-77-6842-01 6 31777736 31777736 G C HSPA1L 3'UTR 0.30 TCGA-77-6842-01 6 40359874 40359874 C A LRFN2 Missense_Mutation p.M726I 0.19 tolerated(0.37) benign(0.366) TCGA-77-6842-01 6 43028015 43028015 G C KLC4 Intron 0.30 TCGA-77-6842-01 6 54791239 54791239 G C FAM83B Missense_Mutation p.R172P 0.17 deleterious(0) probably_damaging(0.997) TCGA-77-6842-01 6 7231467 7231467 G T RREB1 Silent p.L1045L 0.31 TCGA-77-6842-01 6 72968762 72968762 G T RIMS1 Missense_Mutation p.V1001F 0.21 tolerated(0.7) benign(0.128) TCGA-77-6842-01 6 75836187 75836187 C A COL12A1 Splice_Site p.X2114_splice 0.25 TCGA-77-6842-01 6 75836188 75836188 T A COL12A1 Splice_Site p.X2114_splice 0.24 TCGA-77-6842-01 6 84624135 84624135 A G CYB5R4 Missense_Mutation p.D138G 0.41 tolerated(0.31) benign(0.005) TCGA-77-6842-01 6 85446898 85446898 G T TBX18 Missense_Mutation p.N443K 0.22 deleterious(0.03) benign(0.034) TCGA-77-6842-01 7 120591237 120591237 G T ING3 Missense_Mutation p.M16I 0.17 tolerated(0.43) possibly_damaging(0.785) TCGA-77-6842-01 7 121653649 121653649 G T PTPRZ1 Missense_Mutation p.D1517Y 0.10 tolerated_low_confidence(0.06) benign(0.006) TCGA-77-6842-01 7 121756778 121756778 T A AASS Missense_Mutation p.H268L 0.12 tolerated(0.1) probably_damaging(0.944) TCGA-77-6842-01 7 127253588 127253588 T C PAX4 Splice_Site p.X180_splice 0.23 TCGA-77-6842-01 7 128658014 128658014 C T TNPO3 Silent p.T106T 0.15 TCGA-77-6842-01 7 142458433 142458433 A G PRSS1 Missense_Mutation p.K23R 0.20 tolerated(0.35) benign(0.047) TCGA-77-6842-01 7 151849885 151849885 A G KMT2C Missense_Mutation p.L4144P 0.14 benign(0.076) TCGA-77-6842-01 7 36462360 36462360 G T ANLN Missense_Mutation p.L806F 0.43 deleterious(0) probably_damaging(0.999) TCGA-77-6842-01 7 38766568 38766568 C A VPS41 Missense_Mutation p.V809L 0.30 tolerated(0.62) benign(0.012) TCGA-77-6842-01 7 42004456 42004456 C A GLI3 Missense_Mutation p.Q1405H 0.31 deleterious_low_confidence(0.02) possibly_damaging(0.827) TCGA-77-6842-01 7 44365031 44365031 G A CAMK2B 5'UTR 0.29 TCGA-77-6842-01 7 90741934 90741934 A T CDK14 Missense_Mutation p.Q393L 0.37 tolerated(0.09) benign(0.018) TCGA-77-6842-01 7 97870465 97870465 C T TECPR1 Missense_Mutation p.C250Y 0.11 deleterious(0) possibly_damaging(0.498) TCGA-77-6842-01 8 103289270 103289270 G A UBR5 Nonsense_Mutation p.Q2147* 0.37 TCGA-77-6842-01 8 105105799 105105799 G T RIMS2 Intron 0.33 TCGA-77-6842-01 8 110425664 110425664 C A PKHD1L1 Nonsense_Mutation p.Y750* 0.35 TCGA-77-6842-01 8 11615882 11615882 C A GATA4 Silent p.G409G 0.45 TCGA-77-6842-01 8 11842084 11842084 A G DEFB135 Missense_Mutation p.I73M 0.49 tolerated(0.21) possibly_damaging(0.703) TCGA-77-6842-01 8 140743384 140743384 C A TRAPPC9 Missense_Mutation p.D1221Y 0.29 deleterious(0.02) probably_damaging(0.996) TCGA-77-6842-01 8 145697619 145697621 GGA - KIFC2 In_Frame_Del p.E529del 0.23 TCGA-77-6842-01 8 17613239 17613239 T C MTUS1 Silent p.T26T 0.58 TCGA-77-6842-01 8 22880142 22880142 A G TNFRSF10B 3'UTR 0.28 TCGA-77-6842-01 8 39695651 39695651 A G ADAM2 Silent p.S18S 0.38 TCGA-77-6842-01 8 75757734 75757734 T C PI15 Splice_Site p.X214_splice 0.21 TCGA-77-6842-01 8 77616291 77616291 T A ZFHX4 5'UTR 0.38 TCGA-77-6842-01 8 82627302 82627302 G C ZFAND1 Nonsense_Mutation p.Y62* 0.26 TCGA-77-6842-01 8 87645058 87645058 T C CNGB3 Silent p.P414P 0.47 TCGA-77-6842-01 8 89068382 89068382 C - MMP16 Frame_Shift_Del p.T451Pfs*16 0.26 TCGA-77-6842-01 8 92307849 92307849 C A SLC26A7 Missense_Mutation p.T132K 0.15 tolerated(0.9) benign(0.047) TCGA-77-6842-01 8 97311953 97311953 C T PTDSS1 Missense_Mutation p.A211V 0.34 tolerated(0.27) probably_damaging(0.993) TCGA-77-6842-01 9 107266563 107266563 C A OR13F1 Missense_Mutation p.T7K 0.38 deleterious(0) benign(0.219) TCGA-77-6842-01 9 109736455 109736455 G C ZNF462 Missense_Mutation p.A2245P 0.40 probably_damaging(0.93) TCGA-77-6842-01 9 133799657 133799657 C G FIBCD1 Missense_Mutation p.A227P 0.45 deleterious(0.05) benign(0.221) TCGA-77-6842-01 9 140880956 140880956 G T CACNA1B Missense_Mutation p.V621L 0.38 deleterious(0.03) benign(0.101) TCGA-77-6842-01 9 18777359 18777359 G T ADAMTSL1 Silent p.A1044A 0.62 TCGA-77-6842-01 9 32632535 32632535 G C TAF1L Missense_Mutation p.R1015G 0.11 deleterious(0) probably_damaging(1) TCGA-77-6842-01 9 32784758 32784758 G C TMEM215 Missense_Mutation p.E193Q 0.11 deleterious(0.03) probably_damaging(0.994) TCGA-77-6842-01 9 37592388 37592388 C A TOMM5 Missense_Mutation p.D48Y 0.09 deleterious_low_confidence(0) benign(0.307) TCGA-77-6842-01 9 5908666 5908666 G C MLANA Missense_Mutation p.E105D 0.04 tolerated(0.49) probably_damaging(0.997) TCGA-77-6842-01 9 71998571 71998571 C T FAM189A2 Silent p.L174L 0.26 TCGA-77-6842-01 9 84606049 84606049 C A SPATA31D1 Missense_Mutation p.P222T 0.43 tolerated(0.15) probably_damaging(0.956) TCGA-77-6842-01 9 84608548 84608548 C A SPATA31D1 Missense_Mutation p.P1055T 0.45 deleterious(0.03) benign(0.071) TCGA-77-6842-01 X 100668167 100668167 G A HNRNPH2 Missense_Mutation p.M397I 0.56 deleterious(0.02) benign(0) TCGA-77-6842-01 X 10106828 10106828 G - WWC3 Frame_Shift_Del p.Q980Rfs*4 0.35 TCGA-77-6842-01 X 106185848 106185848 T G MORC4 Missense_Mutation p.H758P 0.04 tolerated_low_confidence(0.21) benign(0.065) TCGA-77-6842-01 X 118223055 118223055 T C KIAA1210 Missense_Mutation p.Q713R 0.62 tolerated(0.15) benign(0.008) TCGA-77-6842-01 X 120009291 120009291 G T CT47B1 Silent p.G78G 0.67 TCGA-77-6842-01 X 132351481 132351481 G A TFDP3 Silent p.C269C 0.64 TCGA-77-6842-01 X 147024714 147024714 A T FMR1 Missense_Mutation p.S447C 0.64 deleterious(0.01) possibly_damaging(0.852) TCGA-77-6842-01 X 150349576 150349576 G A GPR50 Silent p.K507K 0.55 TCGA-77-6842-01 X 1584677 1584677 C G P2RY8 Missense_Mutation p.A259P 0.33 deleterious(0.04) possibly_damaging(0.828) TCGA-77-6842-01 X 26157105 26157105 G T MAGEB18 Translation_Start_Site p.M1? 0.27 deleterious(0) probably_damaging(0.994) TCGA-77-6842-01 X 27999052 27999052 C A DCAF8L1 Missense_Mutation p.D134Y 0.53 tolerated(0.12) benign(0.013) TCGA-77-6842-01 X 34148956 34148956 C A FAM47A Silent p.P480P 0.38 TCGA-77-6842-01 X 53117137 53117137 G - TSPYL2 3'UTR 0.76 TCGA-77-6842-01 X 76776393 76776393 C T ATRX Nonsense_Mutation p.W2358* 0.14 TCGA-77-6842-01 X 91090848 91090848 G A PCDH11X Silent p.L115L 0.55 TCGA-77-6843-01 10 11797602 11797602 A G ECHDC3 Missense_Mutation p.R196G 0.38 deleterious(0) possibly_damaging(0.843) TCGA-77-6843-01 10 135345683 135345683 C T CYP2E1 Silent p.A181A 0.32 TCGA-77-6843-01 10 26855948 26855948 C G APBB1IP Missense_Mutation p.A511G 0.39 tolerated_low_confidence(0.43) benign(0) TCGA-77-6843-01 10 435984 435984 G C DIP2C Missense_Mutation p.T515S 0.32 tolerated(0.55) benign(0.028) TCGA-77-6843-01 10 46143858 46143858 C G ZFAND4 Missense_Mutation p.L151F 0.02 deleterious(0) probably_damaging(0.997) TCGA-77-6843-01 10 96698551 96698551 G A CYP2C9 Missense_Mutation p.V38M 0.49 deleterious(0) possibly_damaging(0.536) TCGA-77-6843-01 11 102962433 102962433 G T DCUN1D5 Intron 0.37 TCGA-77-6843-01 11 33566738 33566738 C T KIAA1549L Missense_Mutation p.R770C 0.34 deleterious(0.02) possibly_damaging(0.855) TCGA-77-6843-01 11 399087 399087 C A PKP3 Silent p.L388L 0.30 TCGA-77-6843-01 11 406949 406949 A T SIGIRR Missense_Mutation p.F258Y 0.26 deleterious(0) probably_damaging(0.977) TCGA-77-6843-01 11 43283885 43283885 G A HNRNPKP3 RNA 0.40 TCGA-77-6843-01 11 46797934 46797934 C G CKAP5 Splice_Site p.X955_splice 0.38 TCGA-77-6843-01 11 55735074 55735076 ATG - OR10AG1 In_Frame_Del p.I288del 0.30 TCGA-77-6843-01 11 59830018 59830018 C T MS4A3 Silent p.F78F 0.35 TCGA-77-6843-01 11 61017480 61017480 C T PGA5 Silent p.I337I 0.36 TCGA-77-6843-01 11 62289678 62289678 G C AHNAK Missense_Mutation p.P4071A 0.33 probably_damaging(0.999) TCGA-77-6843-01 11 6245247 6245247 C A FAM160A2 Nonsense_Mutation p.E124* 0.41 TCGA-77-6843-01 11 65734840 65734840 G T SART1 Silent p.G433G 0.24 TCGA-77-6843-01 11 66330286 66330286 G A CTSF 3'Flank 0.07 TCGA-77-6843-01 11 67209533 67209533 C A CORO1B Silent p.P76P 0.34 TCGA-77-6843-01 11 71249557 71249557 C T KRTAP5-8 Silent p.C152C 0.04 TCGA-77-6843-01 11 71821576 71821576 C A LRTOMT 3'UTR 0.09 TCGA-77-6843-01 11 71821647 71821647 G C ANAPC15 Silent p.L41L 0.12 TCGA-77-6843-01 11 77602806 77602806 G C INTS4 Missense_Mutation p.S790C 0.04 tolerated(0.2) benign(0.004) TCGA-77-6843-01 12 126128627 126128627 C G TMEM132B Silent p.S476S 0.29 TCGA-77-6843-01 12 132325159 132325159 C T MMP17 Missense_Mutation p.T155M 0.30 deleterious(0.04) possibly_damaging(0.833) TCGA-77-6843-01 12 20782998 20782998 C G PDE3A Missense_Mutation p.T566S 0.05 tolerated(0.75) benign(0.019) TCGA-77-6843-01 12 42858492 42858492 C A PRICKLE1 Missense_Mutation p.M448I 0.31 tolerated(0.19) benign(0.001) TCGA-77-6843-01 12 51504759 51504759 C A TFCP2 Silent p.P155P 0.03 TCGA-77-6843-01 12 68708938 68708938 C A MDM1 Missense_Mutation p.G430V 0.36 tolerated(0.09) possibly_damaging(0.899) TCGA-77-6843-01 12 83289673 83289673 A G TMTC2 Missense_Mutation p.Y244C 0.32 deleterious(0.02) benign(0.022) TCGA-77-6843-01 12 9247598 9247598 C A A2M Missense_Mutation p.G699V 0.55 tolerated(0.52) benign(0.001) TCGA-77-6843-01 13 114079472 114079472 G T ADPRHL1 Nonsense_Mutation p.Y223* 0.04 TCGA-77-6843-01 13 25348983 25348983 C T RNF17 Silent p.Y86Y 0.23 TCGA-77-6843-01 13 26535770 26535770 G C ATP8A2 Missense_Mutation p.A1081P 0.29 tolerated(0.07) possibly_damaging(0.653) TCGA-77-6843-01 13 32906802 32906802 C G BRCA2 Missense_Mutation p.S396C 0.38 deleterious(0.02) benign(0.379) TCGA-77-6843-01 13 35615200 35615200 C A NBEA Missense_Mutation p.A142D 0.32 deleterious(0) probably_damaging(0.999) TCGA-77-6843-01 13 42773976 42773976 T A DGKH Nonsense_Mutation p.Y808* 0.30 TCGA-77-6843-01 13 43462577 43462577 C G EPSTI1 Missense_Mutation p.E348Q 0.05 tolerated_low_confidence(0.11) benign(0.01) TCGA-77-6843-01 13 75923388 75923388 G C TBC1D4 Silent p.A442A 0.09 TCGA-77-6843-01 14 20389692 20389692 G C OR4K5 Missense_Mutation p.R309S 0.53 tolerated(0.08) benign(0.002) TCGA-77-6843-01 14 66028416 66028416 G T FUT8 Missense_Mutation p.K45N 0.05 deleterious(0.04) benign(0.372) TCGA-77-6843-01 14 95918679 95918679 G A SYNE3 Silent p.D393D 0.58 TCGA-77-6843-01 15 24923179 24923179 C A NPAP1 Missense_Mutation p.P722Q 0.29 deleterious(0.01) probably_damaging(0.961) TCGA-77-6843-01 15 28501299 28501299 C G HERC2 Missense_Mutation p.W894C 0.08 probably_damaging(0.986) TCGA-77-6843-01 15 31776525 31776525 C G OTUD7A Missense_Mutation p.E585Q 0.28 deleterious(0.04) probably_damaging(0.986) TCGA-77-6843-01 15 40068627 40068627 C T FSIP1 Silent p.V33V 0.33 TCGA-77-6843-01 15 49420909 49420909 T C COPS2 Missense_Mutation p.I400V 0.37 tolerated(0.09) possibly_damaging(0.651) TCGA-77-6843-01 15 53908012 53908012 C A WDR72 Missense_Mutation p.L797F 0.31 deleterious(0.01) benign(0.242) TCGA-77-6843-01 15 62161729 62161729 A T VPS13C Missense_Mutation p.M3573K 0.40 deleterious(0) probably_damaging(0.949) TCGA-77-6843-01 15 64010843 64010843 A G HERC1 Missense_Mutation p.V1303A 0.36 possibly_damaging(0.883) TCGA-77-6843-01 15 86266404 86266404 C T AKAP13 Missense_Mutation p.R2204C 0.27 deleterious(0) probably_damaging(0.999) TCGA-77-6843-01 15 96875740 96875740 C G NR2F2 Missense_Mutation p.L136V 0.21 deleterious(0) possibly_damaging(0.902) TCGA-77-6843-01 16 14294336 14294336 A G MKL2 Intron 0.35 TCGA-77-6843-01 16 2284339 2284339 G C E4F1 Missense_Mutation p.D515H 0.22 deleterious(0) probably_damaging(1) TCGA-77-6843-01 16 48295348 48295348 G A LONP2 Missense_Mutation p.R246H 0.31 deleterious(0.03) possibly_damaging(0.466) TCGA-77-6843-01 16 4925259 4925259 G A UBN1 Missense_Mutation p.V950I 0.34 tolerated(0.45) benign(0.002) TCGA-77-6843-01 16 70384457 70384457 C T DDX19A Intron 0.23 TCGA-77-6843-01 16 70432453 70432453 C T ST3GAL2 5'UTR 0.21 TCGA-77-6843-01 16 76509936 76509936 C T CNTNAP4 Missense_Mutation p.H513Y 0.36 deleterious(0) possibly_damaging(0.558) TCGA-77-6843-01 17 13400035 13400035 T C HS3ST3A1 Missense_Mutation p.K234E 0.55 deleterious(0.05) benign(0.036) TCGA-77-6843-01 17 33586263 33586263 A G SLFN5 Missense_Mutation p.E185G 0.36 deleterious(0) benign(0.245) TCGA-77-6843-01 17 39644961 39644961 A G KRT36 Missense_Mutation p.S159P 0.33 deleterious(0) benign(0.287) TCGA-77-6843-01 17 46805705 46805705 C G HOXB13 Missense_Mutation p.G84A 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-77-6843-01 17 61901478 61901478 C A FTSJ3 Nonsense_Mutation p.E374* 0.04 TCGA-77-6843-01 17 7579374 7579374 C A TP53 Missense_Mutation p.G105C 0.74 deleterious(0) probably_damaging(1) TCGA-77-6843-01 18 21735867 21735867 G A CABYR Silent p.T134T 0.37 TCGA-77-6843-01 18 22807637 22807637 G A ZNF521 Missense_Mutation p.P82L 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.644) TCGA-77-6843-01 18 2891892 2891892 G T EMILIN2 Silent p.T589T 0.35 TCGA-77-6843-01 18 32391988 32391988 C T DTNA Missense_Mutation p.R172W 0.24 deleterious(0) probably_damaging(0.99) TCGA-77-6843-01 18 50450087 50450087 G A DCC Silent p.L236L 0.40 TCGA-77-6843-01 18 54446770 54446770 G A WDR7 Missense_Mutation p.R1019Q 0.08 tolerated(0.14) probably_damaging(0.996) TCGA-77-6843-01 18 56939742 56939742 G T RAX Missense_Mutation p.P132T 0.30 deleterious(0.03) benign(0.436) TCGA-77-6843-01 18 694332 694332 A G ENOSF1 Silent p.I125I 0.39 TCGA-77-6843-01 18 72344172 72344172 A G ZNF407 Silent p.K399K 0.32 TCGA-77-6843-01 18 74696817 74696817 C T RP11-862L9.3 3'Flank 0.12 TCGA-77-6843-01 19 14038080 14038080 T A CC2D1A Splice_Site p.X772_splice 0.36 TCGA-77-6843-01 19 14074085 14074085 G C RFX1 Missense_Mutation p.S858C 0.40 deleterious(0) probably_damaging(0.999) TCGA-77-6843-01 19 1986468 1986468 G A BTBD2 3'UTR 0.07 TCGA-77-6843-01 19 32944130 32944130 G C DPY19L3 Missense_Mutation p.G312A 0.03 tolerated(1) possibly_damaging(0.897) TCGA-77-6843-01 19 32971437 32971437 G A DPY19L3 Missense_Mutation p.D655N 0.22 deleterious(0.02) probably_damaging(0.982) TCGA-77-6843-01 19 39517583 39517583 T C FBXO27 Missense_Mutation p.N212S 0.35 tolerated(0.22) benign(0.031) TCGA-77-6843-01 19 40320536 40320536 C A DYRK1B Missense_Mutation p.E168D 0.38 tolerated(0.4) benign(0.001) TCGA-77-6843-01 19 40376777 40376777 G A FCGBP Missense_Mutation p.P3882L 0.11 possibly_damaging(0.908) TCGA-77-6843-01 19 46094078 46094098 CTGGGAGGGCGGAGTGGCCGC TGGGAG GPR4 In_Frame_Del p.A343_Q349delinsLP 0.28 TCGA-77-6843-01 19 48908070 48908070 A G GRIN2D Missense_Mutation p.Y182C 0.25 deleterious(0) probably_damaging(0.989) TCGA-77-6843-01 19 50944267 50944267 A G MYBPC2 Missense_Mutation p.I235V 0.59 tolerated(0.18) benign(0.076) TCGA-77-6843-01 19 51958727 51958727 G A SIGLEC8 Silent p.N332N 0.07 TCGA-77-6843-01 19 55220823 55220823 C A AC098784.2 3'Flank 0.48 TCGA-77-6843-01 19 6389473 6389473 T C GTF2F1 Missense_Mutation p.N103S 0.35 tolerated(0.31) benign(0.023) TCGA-77-6843-01 19 9050083 9050083 G T MUC16 Silent p.A10516A 0.34 TCGA-77-6843-01 19 9225861 9225861 G C OR7G1 Silent p.L193L 0.04 TCGA-77-6843-01 1 142713306 142713306 A G RP11-417J8.6 RNA 0.24 TCGA-77-6843-01 1 151315179 151315179 G A RFX5 Missense_Mutation p.A445V 0.03 deleterious_low_confidence(0) benign(0.018) TCGA-77-6843-01 1 154744537 154744537 G C KCNN3 Silent p.L454L 0.27 TCGA-77-6843-01 1 155167392 155167392 A C THBS3 Silent p.T787T 0.54 TCGA-77-6843-01 1 158613132 158613132 C G SPTA1 Silent p.R1474R 0.50 TCGA-77-6843-01 1 197009804 197009804 A G F13B Silent p.F600F 0.77 TCGA-77-6843-01 1 206594601 206594601 G A SRGAP2 Silent p.R404R 0.75 TCGA-77-6843-01 1 215814076 215814076 A G USH2A Missense_Mutation p.L4931S 0.42 benign(0.018) TCGA-77-6843-01 1 215963525 215963525 G T USH2A Missense_Mutation p.P3353Q 0.23 benign(0.029) TCGA-77-6843-01 1 216052215 216052215 G C USH2A Missense_Mutation p.H2817D 0.26 benign(0.003) TCGA-77-6843-01 1 216144050 216144050 G A USH2A Missense_Mutation p.R2292C 0.76 benign(0.039) TCGA-77-6843-01 1 22915468 22915468 T G EPHA8 Missense_Mutation p.Y362D 0.51 deleterious(0) possibly_damaging(0.724) TCGA-77-6843-01 1 235973375 235973375 C A LYST Missense_Mutation p.S248I 0.19 deleterious_low_confidence(0) benign(0.401) TCGA-77-6843-01 1 243504386 243504386 G A SDCCAG8 Missense_Mutation p.E423K 0.54 deleterious(0.03) possibly_damaging(0.668) TCGA-77-6843-01 1 247875676 247875676 A G OR6F1 Missense_Mutation p.Y128H 0.79 tolerated(0.56) benign(0.005) TCGA-77-6843-01 1 248616259 248616259 C A OR2T2 Missense_Mutation p.S54Y 0.38 tolerated(0.27) possibly_damaging(0.707) TCGA-77-6843-01 1 40703535 40703535 C A RLF Missense_Mutation p.P1054H 0.28 tolerated(0.2) possibly_damaging(0.579) TCGA-77-6843-01 1 78163009 78163009 G C USP33 Missense_Mutation p.S941C 0.29 tolerated_low_confidence(0.05) benign(0.006) TCGA-77-6843-01 1 89523819 89523819 G A GBP1 Missense_Mutation p.R244C 0.33 tolerated(0.05) benign(0.001) TCGA-77-6843-01 1 979373 979373 G T AGRN Nonsense_Mutation p.E657* 0.68 TCGA-77-6843-01 20 43726884 43726884 C A KCNS1 Missense_Mutation p.V177L 0.15 tolerated(0.81) benign(0.026) TCGA-77-6843-01 20 48130859 48130859 C T PTGIS Missense_Mutation p.R310H 0.31 deleterious(0.02) possibly_damaging(0.451) TCGA-77-6843-01 20 53260028 53260028 C A DOK5 Nonsense_Mutation p.S256* 0.38 TCGA-77-6843-01 20 61511072 61511072 C T DIDO1 Missense_Mutation p.R2079K 0.31 probably_damaging(0.98) TCGA-77-6843-01 20 61511188 61511188 G C DIDO1 Silent p.R2040R 0.30 TCGA-77-6843-01 20 62127378 62127378 C T EEF1A2 Missense_Mutation p.G52E 0.04 deleterious_low_confidence(0) probably_damaging(1) TCGA-77-6843-01 21 35468222 35468222 C T SLC5A3 Missense_Mutation p.S242F 0.33 tolerated(0.08) benign(0) TCGA-77-6843-01 21 42767531 42767531 G C MX2 Missense_Mutation p.D297H 0.05 deleterious(0) probably_damaging(0.945) TCGA-77-6843-01 22 22786514 22786514 G T IGLV1-36 Missense_Mutation p.V22L 0.42 deleterious_low_confidence(0) benign(0.246) TCGA-77-6843-01 22 31011425 31011425 T C TCN2 Missense_Mutation p.F240L 0.34 tolerated(0.13) possibly_damaging(0.745) TCGA-77-6843-01 22 39079863 39079863 G C TOMM22 3'UTR 0.31 TCGA-77-6843-01 2 101624257 101624257 C T TBC1D8 3'UTR 0.09 TCGA-77-6843-01 2 11337716 11337716 G C ROCK2 Missense_Mutation p.S1072C 0.05 deleterious(0.05) possibly_damaging(0.662) TCGA-77-6843-01 2 121747961 121747961 C G GLI2 Missense_Mutation p.P1491A 0.29 deleterious(0.01) probably_damaging(0.994) TCGA-77-6843-01 2 135926520 135926520 T C RAB3GAP1 3'UTR 0.35 TCGA-77-6843-01 2 152392274 152392274 T G NEB Silent p.S7081S 0.07 TCGA-77-6843-01 2 165550829 165550829 G T COBLL1 Missense_Mutation p.H1063N 0.40 tolerated(0.34) benign(0.001) TCGA-77-6843-01 2 170097513 170097513 C G LRP2 Missense_Mutation p.E1344Q 0.03 probably_damaging(0.999) TCGA-77-6843-01 2 178098945 178098945 G C NFE2L2 Missense_Mutation p.R34G 0.36 deleterious(0) probably_damaging(1) TCGA-77-6843-01 2 179427315 179427315 A G TTN Silent p.I27848I 0.31 TCGA-77-6843-01 2 196726543 196726543 G T DNAH7 Missense_Mutation p.S2545Y 0.28 deleterious(0) probably_damaging(0.997) TCGA-77-6843-01 2 199011732 199011732 G T PLCL1 3'UTR 0.39 TCGA-77-6843-01 2 204045104 204045104 G C NBEAL1 Splice_Site p.X2126_splice 0.29 TCGA-77-6843-01 2 241468476 241468476 G T ANKMY1 Missense_Mutation p.Q222K 0.34 tolerated(0.06) probably_damaging(0.967) TCGA-77-6843-01 2 72360189 72360189 C T CYP26B1 Missense_Mutation p.G370D 0.27 deleterious(0) probably_damaging(0.999) TCGA-77-6843-01 2 98435156 98435156 G C TMEM131 Missense_Mutation p.A368G 0.34 tolerated(0.06) probably_damaging(0.994) TCGA-77-6843-01 3 10291194 10291194 C T TATDN2 Missense_Mutation p.R104W 0.46 tolerated(0.05) benign(0.017) TCGA-77-6843-01 3 115560786 115560786 C T LSAMP Silent p.L275L 0.05 TCGA-77-6843-01 3 119886083 119886083 C A GPR156 Missense_Mutation p.E747D 0.30 tolerated(0.28) benign(0.085) TCGA-77-6843-01 3 121980417 121980417 C A CASR Missense_Mutation p.Q179K 0.25 tolerated(0.48) benign(0.257) TCGA-77-6843-01 3 123452795 123452795 C T MYLK Missense_Mutation p.A350T 0.27 tolerated(0.67) possibly_damaging(0.636) TCGA-77-6843-01 3 130686025 130686025 A T ATP2C1 Missense_Mutation p.I421F 0.22 tolerated(0.68) benign(0.005) TCGA-77-6843-01 3 142524910 142524910 G C TRPC1 Missense_Mutation p.V739L 0.25 deleterious(0.02) probably_damaging(0.925) TCGA-77-6843-01 3 142539871 142539871 A G PCOLCE2 Silent p.V322V 0.27 TCGA-77-6843-01 3 142567132 142567132 C T PCOLCE2 Silent p.Q125Q 0.34 TCGA-77-6843-01 3 142567141 142567141 C T PCOLCE2 Missense_Mutation p.M122I 0.34 tolerated(0.14) benign(0.02) TCGA-77-6843-01 3 142567170 142567170 C T PCOLCE2 Missense_Mutation p.G113R 0.28 deleterious(0.02) possibly_damaging(0.451) TCGA-77-6843-01 3 170110086 170110086 G A SKIL Missense_Mutation p.D646N 0.15 deleterious(0) probably_damaging(0.999) TCGA-77-6843-01 3 44692528 44692528 A T ZNF35 5'UTR 0.29 TCGA-77-6843-01 3 98216640 98216640 T C OR5K2 Missense_Mutation p.V39A 0.25 deleterious(0) benign(0.027) TCGA-77-6843-01 3 99514500 99514501 GC T COL8A1 Frame_Shift_Del p.P586Qfs*10 0.27 TCGA-77-6843-01 4 121675740 121675740 C A PRDM5 Nonsense_Mutation p.G531* 0.58 TCGA-77-6843-01 4 175580241 175580241 T C GLRA3 Silent p.K345K 0.47 TCGA-77-6843-01 4 184931496 184931496 G T STOX2 Missense_Mutation p.G502V 0.64 deleterious(0) possibly_damaging(0.721) TCGA-77-6843-01 4 23814462 23814462 C A PPARGC1A Nonsense_Mutation p.E643* 0.32 TCGA-77-6843-01 4 25408842 25408842 A C ANAPC4 Missense_Mutation p.K466N 0.37 deleterious(0.01) possibly_damaging(0.649) TCGA-77-6843-01 4 47593066 47593066 T C ATP10D Missense_Mutation p.Y1317H 0.30 deleterious(0.05) benign(0.052) TCGA-77-6843-01 4 47644054 47644054 A G CORIN Missense_Mutation p.I694T 0.34 tolerated(0.33) benign(0.007) TCGA-77-6843-01 4 48422345 48422345 A T SLAIN2 Missense_Mutation p.T522S 0.33 tolerated(0.59) benign(0.05) TCGA-77-6843-01 4 6296909 6296909 G C WFS1 Missense_Mutation p.R285P 0.25 deleterious(0.05) possibly_damaging(0.778) TCGA-77-6843-01 4 69536056 69536056 A G UGT2B15 Missense_Mutation p.L94P 0.29 deleterious(0) possibly_damaging(0.797) TCGA-77-6843-01 4 89338660 89338660 C A HERC6 Missense_Mutation p.H548N 0.42 tolerated(0.26) benign(0) TCGA-77-6843-01 5 10402200 10402200 C T MARCH6 Silent p.I334I 0.12 TCGA-77-6843-01 5 127680104 127680104 G T FBN2 Missense_Mutation p.L1106I 0.34 deleterious(0.02) possibly_damaging(0.692) TCGA-77-6843-01 5 133537559 133537559 T C PPP2CA Missense_Mutation p.T156A 0.32 tolerated(0.33) probably_damaging(0.998) TCGA-77-6843-01 5 13920616 13920616 C T DNAH5 Missense_Mutation p.M257I 0.26 benign(0.072) TCGA-77-6843-01 5 140573074 140573074 A T PCDHB10 Missense_Mutation p.I317L 0.04 tolerated_low_confidence(0.34) benign(0.001) TCGA-77-6843-01 5 140574454 140574454 C G PCDHB10 Missense_Mutation p.Q777E 0.27 tolerated_low_confidence(0.3) benign(0.004) TCGA-77-6843-01 5 140811972 140811972 G T PCDHGA12 Missense_Mutation p.S549I 0.34 deleterious_low_confidence(0.01) benign(0.438) TCGA-77-6843-01 5 147040673 147040673 T C JAKMIP2 Silent p.E155E 0.36 TCGA-77-6843-01 5 150923786 150923786 G C FAT2 Nonsense_Mutation p.S2301* 0.03 TCGA-77-6843-01 5 167915711 167915711 A G RARS Silent p.K50K 0.39 TCGA-77-6843-01 5 169028495 169028495 C G SPDL1 Silent p.V512V 0.07 TCGA-77-6843-01 5 176048253 176048253 T C SNCB Missense_Mutation p.M112V 0.33 tolerated(0.41) unknown(0) TCGA-77-6843-01 5 176048254 176048254 C G SNCB Silent p.L111L 0.35 TCGA-77-6843-01 5 176048255 176048255 A G SNCB Missense_Mutation p.L111P 0.37 tolerated(0.06) unknown(0) TCGA-77-6843-01 5 177302723 177302723 G C RP11-423H2.5 5'Flank 0.44 TCGA-77-6843-01 5 33576435 33576435 C T ADAMTS12 Silent p.G1232G 0.31 TCGA-77-6843-01 5 74077529 74077529 G T FAM169A Missense_Mutation p.S590Y 0.35 deleterious(0) probably_damaging(0.996) TCGA-77-6843-01 5 80040324 80040324 G T MSH3 Splice_Site p.X552_splice 0.33 TCGA-77-6843-01 5 82836668 82836668 A G VCAN Missense_Mutation p.S2616G 0.42 tolerated(0.26) benign(0.012) TCGA-77-6843-01 6 110118021 110118021 C G FIG4 Missense_Mutation p.P838R 0.29 tolerated(0.37) benign(0.001) TCGA-77-6843-01 6 112499435 112499435 C G LAMA4 Splice_Site p.X360_splice 0.08 TCGA-77-6843-01 6 116833323 116833323 A G FAM26E Missense_Mutation p.K155R 0.28 tolerated(0.29) benign(0.011) TCGA-77-6843-01 6 147830229 147830229 C A SAMD5 Silent p.I55I 0.44 TCGA-77-6843-01 6 152589280 152589280 G T SYNE1 Silent p.A6242A 0.35 TCGA-77-6843-01 6 168226510 168226510 G T MLLT4 5'Flank 0.04 TCGA-77-6843-01 6 29012305 29012305 T C OR2W1 Missense_Mutation p.I216M 0.30 deleterious(0.04) benign(0.071) TCGA-77-6843-01 6 30079451 30079451 C T TRIM31 Missense_Mutation p.G163S 0.04 tolerated(0.1) benign(0.158) TCGA-77-6843-01 6 31683402 31683402 G A LY6G6D Splice_Site p.X60_splice 0.31 TCGA-77-6843-01 6 348819 348821 AGA - DUSP22 In_Frame_Del p.E164del 0.11 TCGA-77-6843-01 6 40360089 40360089 G T LRFN2 Missense_Mutation p.R655S 0.08 tolerated(0.85) benign(0.069) TCGA-77-6843-01 6 70064169 70064169 C A BAI3 Silent p.P1168P 0.31 TCGA-77-6843-01 6 71235885 71235885 T C FAM135A Missense_Mutation p.I1033T 0.40 deleterious(0.04) benign(0.04) TCGA-77-6843-01 6 85448246 85448246 G A TBX18 Silent p.T356T 0.32 TCGA-77-6843-01 6 88187231 88187231 A G SLC35A1 Silent p.L56L 0.38 TCGA-77-6843-01 6 97561865 97561865 G A KLHL32 Silent p.Q278Q 0.10 TCGA-77-6843-01 7 100060995 100060995 G T C7orf61 Nonsense_Mutation p.C126* 0.07 TCGA-77-6843-01 7 102579884 102579884 A G LRRC17 Silent p.K260K 0.30 TCGA-77-6843-01 7 107564727 107564727 A G LAMB1 Silent p.N1724N 0.35 TCGA-77-6843-01 7 120764468 120764468 A G CPED1 Silent p.L334L 0.04 TCGA-77-6843-01 7 20778692 20778692 C A ABCB5 Missense_Mutation p.A985D 0.39 deleterious(0) probably_damaging(0.998) TCGA-77-6843-01 7 21779224 21779224 A G DNAH11 Missense_Mutation p.H2623R 0.26 benign(0.025) TCGA-77-6843-01 7 44425685 44425685 A G NUDCD3 Silent p.A337A 0.33 TCGA-77-6843-01 8 110530581 110530581 G C PKHD1L1 Missense_Mutation p.V3959L 0.34 tolerated(0.1) benign(0.345) TCGA-77-6843-01 8 113277716 113277716 C T CSMD3 Silent p.T3204T 0.06 TCGA-77-6843-01 8 145583036 145583036 A G SLC52A2 Missense_Mutation p.N28S 0.27 deleterious(0.01) benign(0.099) TCGA-77-6843-01 8 72965015 72965015 C A RP11-383H13.1 3'UTR 0.40 TCGA-77-6843-01 8 89086938 89086938 C A MMP16 Missense_Mutation p.V373L 0.29 deleterious(0.04) benign(0.319) TCGA-77-6843-01 8 95541331 95541331 C T KIAA1429 Missense_Mutation p.E283K 0.34 tolerated(0.06) possibly_damaging(0.549) TCGA-77-6843-01 9 119460526 119460526 G T TRIM32 Missense_Mutation p.A169S 0.44 tolerated(0.4) benign(0.003) TCGA-77-6843-01 9 131287568 131287568 C T GLE1 Missense_Mutation p.A332V 0.05 deleterious(0.01) possibly_damaging(0.742) TCGA-77-6843-01 9 134390903 134390903 G C POMT1 Missense_Mutation p.W444C 0.09 deleterious(0) probably_damaging(0.988) TCGA-77-6843-01 9 140055620 140055620 C G GRIN1 Missense_Mutation p.T458S 0.23 tolerated(0.54) benign(0.008) TCGA-77-6843-01 9 14307346 14307346 G C NFIB Missense_Mutation p.I68M 0.52 deleterious(0) benign(0.216) TCGA-77-6843-01 9 21971015 21971032 CGGGCAGACGGCCCCAGG - CDKN2A In_Frame_Del p.A109_P114del 0.51 TCGA-77-6843-01 9 32632397 32632397 C G TAF1L Missense_Mutation p.G1061R 0.04 tolerated(0.13) possibly_damaging(0.449) TCGA-77-6843-01 X 101572313 101572313 G A NXF2 Intron 0.29 TCGA-77-6843-01 X 114953239 114953239 G C RP1-241P17.4 3'UTR 0.62 TCGA-77-6843-01 X 140983192 140983192 A C MAGEC3 Missense_Mutation p.Q349H 0.72 deleterious(0) benign(0.216) TCGA-77-6843-01 X 140983193 140983193 G T MAGEC3 Nonsense_Mutation p.G350* 0.74 TCGA-77-6843-01 X 151869852 151869852 G T MAGEA6 Missense_Mutation p.C181F 0.67 deleterious(0.05) probably_damaging(0.982) TCGA-77-6843-01 X 154176159 154176159 T C F8 Missense_Mutation p.S643G 0.72 tolerated(0.07) benign(0.005) TCGA-77-6843-01 X 154292366 154292366 T C MTCP1 3'UTR 0.52 TCGA-77-6843-01 X 155127825 155127825 G A VAMP7 Missense_Mutation p.R85K 0.05 tolerated(0.19) possibly_damaging(0.887) TCGA-77-6843-01 X 35966519 35966527 TAAAGTAGA - CXorf22 In_Frame_Del p.K203_D205del 0.18 TCGA-77-6843-01 X 69615839 69615839 C T KIF4A Missense_Mutation p.S810L 0.06 tolerated(0.24) benign(0.002) TCGA-77-6843-01 X 77150810 77150810 T G MAGT1 Missense_Mutation p.K65T 0.67 tolerated(0.05) benign(0.193) TCGA-77-6844-01 10 101292776 101292776 A T NKX2-3 5'UTR 0.24 TCGA-77-6844-01 10 22618168 22618168 A T BMI1 Missense_Mutation p.R226S 0.30 deleterious(0.01) benign(0.196) TCGA-77-6844-01 10 52086968 52086968 C T SGMS1 Silent p.P246P 0.22 TCGA-77-6844-01 10 67680181 67680181 C T CTNNA3 Silent p.E865E 0.37 TCGA-77-6844-01 10 68280418 68280418 G - CTNNA3 Frame_Shift_Del p.V497* 0.22 TCGA-77-6844-01 10 89692936 89692955 ACATCGGGGCAAATTTTTAA - PTEN Frame_Shift_Del p.H141Gfs*32 0.42 TCGA-77-6844-01 11 113683174 113683174 C T USP28 Missense_Mutation p.G599E 0.34 deleterious(0) probably_damaging(1) TCGA-77-6844-01 11 1215808 1215808 G C MUC5AC RNA 0.38 TCGA-77-6844-01 11 123476108 123476108 T C GRAMD1B Silent p.D272D 0.10 TCGA-77-6844-01 11 124013267 124013267 A G VWA5A Silent p.A714A 0.35 TCGA-77-6844-01 11 124135565 124135565 G T OR8G5 Silent p.S281S 0.25 TCGA-77-6844-01 11 124189695 124189695 A G OR8D2 Silent p.N133N 0.41 TCGA-77-6844-01 11 124310791 124310791 T A OR8B8 Missense_Mutation p.Y64F 0.24 tolerated_low_confidence(1) benign(0) TCGA-77-6844-01 11 3720319 3720319 C T NUP98 Silent p.Q1334Q 0.47 TCGA-77-6844-01 11 51516133 51516133 C G OR4C46 Missense_Mutation p.I284M 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-77-6844-01 11 55032411 55032411 G A TRIM48 Missense_Mutation p.R27K 0.69 tolerated(1) benign(0.007) TCGA-77-6844-01 11 56019882 56019882 G T OR5T3 Missense_Mutation p.L69F 0.32 deleterious(0.02) probably_damaging(0.937) TCGA-77-6844-01 11 59942882 59942882 C T MS4A6A Missense_Mutation p.S209N 0.20 deleterious(0.05) possibly_damaging(0.586) TCGA-77-6844-01 11 60699567 60699567 G A TMEM132A Missense_Mutation p.G443S 0.07 tolerated(0.28) possibly_damaging(0.758) TCGA-77-6844-01 11 6461698 6461698 T C HPX Silent p.K71K 0.49 TCGA-77-6844-01 11 64940263 64940263 C A SPDYC Missense_Mutation p.P209T 0.44 deleterious(0) probably_damaging(0.968) TCGA-77-6844-01 11 68153849 68153849 G T LRP5 Missense_Mutation p.D361Y 0.30 deleterious(0) possibly_damaging(0.688) TCGA-77-6844-01 11 6953426 6953426 G A ZNF215 5'UTR 0.35 TCGA-77-6844-01 11 8947133 8947133 C G C11orf16 Missense_Mutation p.V361L 0.60 deleterious(0) probably_damaging(0.981) TCGA-77-6844-01 12 108003984 108003984 G A BTBD11 Missense_Mutation p.C554Y 0.41 tolerated(0.46) probably_damaging(0.939) TCGA-77-6844-01 12 10959278 10959278 G A TAS2R8 Missense_Mutation p.T101I 0.29 deleterious(0) possibly_damaging(0.892) TCGA-77-6844-01 12 119583327 119583327 C T SRRM4 Missense_Mutation p.R305W 0.36 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-77-6844-01 12 124856902 124856902 C T NCOR2 Missense_Mutation p.E825K 0.35 unknown(0) TCGA-77-6844-01 12 28116261 28116261 G A PTHLH Intron 0.25 TCGA-77-6844-01 12 40076583 40076583 A T C12orf40 Missense_Mutation p.Q286L 0.25 tolerated(0.07) possibly_damaging(0.842) TCGA-77-6844-01 12 5153773 5153773 C T KCNA5 Missense_Mutation p.R154C 0.31 deleterious(0) probably_damaging(0.943) TCGA-77-6844-01 12 54891655 54891655 C A NCKAP1L Missense_Mutation p.R28S 0.37 deleterious(0) probably_damaging(0.991) TCGA-77-6844-01 12 57108209 57108209 A T NACA Silent p.A767A 0.30 TCGA-77-6844-01 12 75444577 75444577 G A KCNC2 Missense_Mutation p.A403V 0.39 deleterious(0) probably_damaging(1) TCGA-77-6844-01 12 79689942 79689944 AAG - SYT1 In_Frame_Del p.K193del 0.31 TCGA-77-6844-01 12 83251016 83251016 G A TMTC2 Missense_Mutation p.S104N 0.23 tolerated(0.58) benign(0.005) TCGA-77-6844-01 13 113470511 113470511 G C ATP11A Missense_Mutation p.E186Q 0.18 deleterious(0) probably_damaging(0.997) TCGA-77-6844-01 14 20943381 20943381 G A PNP Missense_Mutation p.V208M 0.24 tolerated(1) benign(0.002) TCGA-77-6844-01 14 21162164 21162164 G A ANG Silent p.P147P 0.12 TCGA-77-6844-01 14 22038663 22038663 A G OR10G3 Silent p.D71D 0.58 TCGA-77-6844-01 14 42357140 42357140 C G LRFN5 Missense_Mutation p.Q438E 0.24 tolerated(0.26) benign(0.023) TCGA-77-6844-01 14 47530681 47530681 A G MDGA2 Silent p.A432A 0.52 TCGA-77-6844-01 14 50585517 50585517 G T SOS2 Missense_Mutation p.P1182T 0.49 tolerated(0.24) probably_damaging(0.996) TCGA-77-6844-01 14 51382107 51382107 G C PYGL Silent p.S450S 0.18 TCGA-77-6844-01 14 52520569 52520569 C A NID2 Missense_Mutation p.W386L 0.62 tolerated(0.65) benign(0) TCGA-77-6844-01 14 53162207 53162207 C G ERO1L 5'UTR 0.18 TCGA-77-6844-01 14 72943479 72943479 G A RGS6 Silent p.Q241Q 0.57 TCGA-77-6844-01 14 75497292 75497292 T C MLH3 Missense_Mutation p.N1314S 0.70 tolerated(0.18) benign(0.124) TCGA-77-6844-01 14 82000118 82000118 G A SEL1L 5'UTR 0.56 TCGA-77-6844-01 15 20490506 20490506 C A CHEK2P2 Intron 0.08 TCGA-77-6844-01 15 20876534 20876534 C A NBEAP1 RNA 0.06 TCGA-77-6844-01 15 25453110 25453110 C A SNORD115-22 5'Flank 0.42 TCGA-77-6844-01 15 25963359 25963359 C T ATP10A Silent p.L517L 0.23 TCGA-77-6844-01 15 42003272 42003272 A - MGA Frame_Shift_Del p.K937Rfs*57 0.11 TCGA-77-6844-01 15 44620915 44620915 C T CASC4 Nonsense_Mutation p.R139* 0.37 TCGA-77-6844-01 15 83331658 83331658 G A AP3B2 Missense_Mutation p.S855L 0.19 tolerated(0.74) benign(0.32) TCGA-77-6844-01 15 88522587 88522587 G T NTRK3 Intron 0.36 TCGA-77-6844-01 16 1035261 1035261 C A SOX8 Missense_Mutation p.P406T 0.29 tolerated(0.8) probably_damaging(0.999) TCGA-77-6844-01 16 12450073 12450073 C T SNX29 Silent p.A612A 0.27 TCGA-77-6844-01 16 20380993 20380993 C T PDILT Missense_Mutation p.D313N 0.42 tolerated(0.32) benign(0.057) TCGA-77-6844-01 16 2111904 2111904 C T TSC2 Silent p.V384V 0.28 TCGA-77-6844-01 16 27720175 27720175 C T KIAA0556 Silent p.H513H 0.15 TCGA-77-6844-01 16 28116008 28116008 C G XPO6 Missense_Mutation p.K935N 0.19 deleterious(0) possibly_damaging(0.848) TCGA-77-6844-01 16 28507558 28507558 T C APOBR Missense_Mutation p.L399P 0.46 tolerated(0.17) possibly_damaging(0.883) TCGA-77-6844-01 16 29818947 29818947 T A MAZ Missense_Mutation p.C281S 0.32 deleterious(0) possibly_damaging(0.765) TCGA-77-6844-01 16 31049332 31049332 G T STX4 Missense_Mutation p.R155L 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-77-6844-01 16 57110758 57110758 C A NLRC5 Silent p.V1593V 0.27 TCGA-77-6844-01 16 68373242 68373242 G T PRMT7 Silent p.V174V 0.39 TCGA-77-6844-01 16 72830158 72830158 G C ZFHX3 Silent p.L2141L 0.22 TCGA-77-6844-01 16 75512778 75512778 C T CHST6 Missense_Mutation p.E317K 0.33 tolerated(0.06) benign(0.108) TCGA-77-6844-01 16 84907566 84907566 A G CRISPLD2 Missense_Mutation p.K385E 0.31 tolerated(0.87) benign(0.003) TCGA-77-6844-01 16 88601402 88601402 G A ZFPM1 3'UTR 0.13 TCGA-77-6844-01 16 90162602 90162602 C T TUBB8P7 RNA 0.45 TCGA-77-6844-01 17 10362718 10362718 C A MYH4 Silent p.L479L 0.44 TCGA-77-6844-01 17 16049712 16049712 C T NCOR1 Missense_Mutation p.E354K 0.45 probably_damaging(0.993) TCGA-77-6844-01 17 18284980 18284980 G A EVPLL Silent p.K94K 0.44 TCGA-77-6844-01 17 3119808 3119808 C T OR1A1 Silent p.A298A 0.44 TCGA-77-6844-01 17 33680367 33680367 C A SLFN11 Missense_Mutation p.R637M 0.21 tolerated(0.07) possibly_damaging(0.669) TCGA-77-6844-01 17 35583264 35583264 C A ACACA Missense_Mutation p.R1119L 0.30 deleterious(0) probably_damaging(0.997) TCGA-77-6844-01 17 56573534 56573534 T C MTMR4 Missense_Mutation p.S657G 0.37 tolerated(0.39) benign(0) TCGA-77-6844-01 17 58040418 58040418 C T RNFT1 Missense_Mutation p.S95N 0.16 tolerated(0.06) benign(0.01) TCGA-77-6844-01 17 58128227 58128227 G A HEATR6 Missense_Mutation p.P801S 0.31 tolerated(0.08) benign(0.132) TCGA-77-6844-01 17 66871824 66871824 G T ABCA8 Missense_Mutation p.T1434N 0.44 deleterious(0) probably_damaging(0.918) TCGA-77-6844-01 17 67251961 67251961 T C ABCA5 Missense_Mutation p.K1297E 0.32 deleterious(0) probably_damaging(0.999) TCGA-77-6844-01 17 71420157 71420157 G A SDK2 Missense_Mutation p.S553F 0.55 deleterious(0) possibly_damaging(0.908) TCGA-77-6844-01 17 7577609 7577609 C T TP53 Splice_Site p.X225_splice 0.49 TCGA-77-6844-01 18 13621161 13621161 C T LDLRAD4 Missense_Mutation p.T76M 0.29 tolerated(0.86) probably_damaging(0.999) TCGA-77-6844-01 19 14104564 14104564 G A RFX1 Missense_Mutation p.P31L 0.27 deleterious_low_confidence(0.04) unknown(0) TCGA-77-6844-01 19 17366315 17366315 T A USHBP1 Missense_Mutation p.H524L 0.28 tolerated(0.84) benign(0.007) TCGA-77-6844-01 19 19345884 19345884 G - NCAN Frame_Shift_Del p.G1078Afs*46 0.29 TCGA-77-6844-01 19 22605063 22605063 G T ZNF98 5'UTR 0.30 TCGA-77-6844-01 19 29215208 29215208 C G AC005307.3 RNA 0.21 TCGA-77-6844-01 19 35842830 35842830 G T FFAR1 Missense_Mutation p.V126L 0.22 tolerated(0.05) probably_damaging(0.936) TCGA-77-6844-01 19 37211426 37211426 G T ZNF567 Missense_Mutation p.Q569H 0.22 tolerated(0.29) probably_damaging(0.997) TCGA-77-6844-01 19 42796771 42796771 A C CIC Missense_Mutation p.S1077R 0.26 benign(0.047) TCGA-77-6844-01 19 55224693 55224693 T C LILRP2 RNA 0.23 TCGA-77-6844-01 19 58216233 58216233 A G ZNF154 Silent p.L50L 0.32 TCGA-77-6844-01 1 149885164 149885164 C T SV2A Missense_Mutation p.G77S 0.27 tolerated_low_confidence(0.14) unknown(0) TCGA-77-6844-01 1 151787138 151787138 C T RORC Missense_Mutation p.R282K 0.38 deleterious(0.03) benign(0.025) TCGA-77-6844-01 1 153520937 153520937 C T S100A3 Missense_Mutation p.V9I 0.33 tolerated(0.18) benign(0.004) TCGA-77-6844-01 1 158263349 158263350 AC - CD1C 3'UTR 0.20 TCGA-77-6844-01 1 159175415 159175415 G T DARC Silent p.L64L 0.29 TCGA-77-6844-01 1 163039226 163039226 C T RGS4 Silent p.S81S 0.20 TCGA-77-6844-01 1 17275348 17275348 C T CROCC Silent p.A921A 0.46 TCGA-77-6844-01 1 181453096 181453096 C A CACNA1E Missense_Mutation p.F72L 0.31 tolerated(0.15) benign(0.153) TCGA-77-6844-01 1 186310210 186310210 C G TPR Missense_Mutation p.E1324Q 0.32 benign(0.403) TCGA-77-6844-01 1 205740612 205740612 G C RAB7L1 Silent p.L122L 0.43 TCGA-77-6844-01 1 205741642 205741642 G A RAB7L1 Nonsense_Mutation p.Q60* 0.43 TCGA-77-6844-01 1 211654744 211654744 G A RD3 Missense_Mutation p.S5L 0.24 tolerated(0.09) benign(0.1) TCGA-77-6844-01 1 224586731 224586731 T A WDR26 Missense_Mutation p.L475F 0.33 deleterious(0) benign(0.354) TCGA-77-6844-01 1 228645380 228645380 C A HIST3H2A Missense_Mutation p.G47C 0.38 deleterious_low_confidence(0) probably_damaging(1) TCGA-77-6844-01 1 237732616 237732616 G C RYR2 Missense_Mutation p.D1199H 0.29 probably_damaging(0.969) TCGA-77-6844-01 1 247611779 247611779 G T NLRP3 Silent p.L1028L 0.45 TCGA-77-6844-01 1 247835803 247835803 A G OR13G1 Silent p.L181L 0.31 TCGA-77-6844-01 1 248551473 248551473 C A OR2T6 Silent p.A188A 0.39 TCGA-77-6844-01 1 26898753 26898753 G T RPS6KA1 Missense_Mutation p.G648V 0.26 deleterious(0.03) benign(0.163) TCGA-77-6844-01 1 27875360 27875360 G A AHDC1 Silent p.S1089S 0.52 TCGA-77-6844-01 1 35578958 35578958 A T ZMYM1 Missense_Mutation p.K509N 0.07 tolerated(0.12) benign(0.128) TCGA-77-6844-01 1 35579207 35579207 G A ZMYM1 Missense_Mutation p.M592I 0.21 tolerated(1) benign(0) TCGA-77-6844-01 1 46476522 46476522 C T MAST2 Nonsense_Mutation p.R367* 0.53 TCGA-77-6844-01 1 53459304 53459304 C A SCP2 Intron 0.25 TCGA-77-6844-01 1 84376964 84376964 C A TTLL7 Missense_Mutation p.S557I 0.36 tolerated(0.05) benign(0.004) TCGA-77-6844-01 20 20501640 20501640 T A RALGAPA2 Silent p.P1335P 0.26 TCGA-77-6844-01 20 47262552 47262552 C T PREX1 Missense_Mutation p.D1117N 0.22 tolerated_low_confidence(0.16) benign(0.064) TCGA-77-6844-01 20 9440383 9440383 G T PLCB4 Missense_Mutation p.Q1046H 0.33 deleterious(0.02) probably_damaging(0.975) TCGA-77-6844-01 21 10944782 10944782 T A TPTE Missense_Mutation p.Q151L 0.13 tolerated(0.14) benign(0.093) TCGA-77-6844-01 21 27136985 27136985 G T GABPA Missense_Mutation p.W341C 0.30 deleterious(0) probably_damaging(0.914) TCGA-77-6844-01 21 37518604 37518604 A G CBR3 Missense_Mutation p.R210G 0.32 deleterious(0.01) benign(0.047) TCGA-77-6844-01 21 37732251 37732251 A G MORC3 Splice_Site p.X403_splice 0.26 TCGA-77-6844-01 21 38114083 38114083 T C SIM2 Missense_Mutation p.W306R 0.21 deleterious(0) probably_damaging(0.999) TCGA-77-6844-01 21 41559142 41559142 G T DSCAM Missense_Mutation p.R899S 0.28 deleterious(0.03) possibly_damaging(0.862) TCGA-77-6844-01 22 22890708 22890708 G T PRAME Silent p.T437T 0.32 TCGA-77-6844-01 2 112944851 112944851 C T FBLN7 Missense_Mutation p.P363L 0.35 tolerated(1) probably_damaging(1) TCGA-77-6844-01 2 116538526 116538526 G T DPP10 Missense_Mutation p.A484S 0.35 tolerated(0.08) possibly_damaging(0.907) TCGA-77-6844-01 2 141135856 141135856 C A LRP1B Splice_Site p.X3511_splice 0.32 TCGA-77-6844-01 2 143742738 143742738 G C KYNU Missense_Mutation p.W272S 0.31 deleterious(0) probably_damaging(1) TCGA-77-6844-01 2 160623868 160623868 G A MARCH7 3'UTR 0.32 TCGA-77-6844-01 2 160672002 160672002 C G LY75-CD302 Missense_Mutation p.C1488S 0.24 deleterious(0.01) probably_damaging(0.943) TCGA-77-6844-01 2 177016750 177016750 C A HOXD4 Missense_Mutation p.P130Q 0.23 deleterious(0.03) possibly_damaging(0.601) TCGA-77-6844-01 2 179395175 179395175 T A TTN Silent p.I35389I 0.22 TCGA-77-6844-01 2 179602991 179602991 C T TTN Missense_Mutation p.R4730Q 0.30 TCGA-77-6844-01 2 186678562 186678562 G C FSIP2 Silent p.T6795T 0.35 TCGA-77-6844-01 2 196718073 196718073 A G DNAH7 Silent p.Y2925Y 0.32 TCGA-77-6844-01 2 21263892 21263892 C G APOB Missense_Mutation p.E101Q 0.36 possibly_damaging(0.874) TCGA-77-6844-01 2 223791856 223791856 G T ACSL3 Missense_Mutation p.G472C 0.27 tolerated(0.15) probably_damaging(1) TCGA-77-6844-01 2 225661783 225661783 C A DOCK10 Missense_Mutation p.R1575S 0.27 deleterious(0) possibly_damaging(0.735) TCGA-77-6844-01 2 225661784 225661784 C A DOCK10 Missense_Mutation p.R1575M 0.27 deleterious(0) probably_damaging(0.95) TCGA-77-6844-01 2 225740756 225740756 C A DOCK10 Silent p.L310L 0.23 TCGA-77-6844-01 2 227875068 227875068 A T COL4A4 Missense_Mutation p.Y1495N 0.37 unknown(0) TCGA-77-6844-01 2 230411673 230411673 T A DNER Missense_Mutation p.K328M 0.34 deleterious(0.01) possibly_damaging(0.702) TCGA-77-6844-01 2 233321734 233321734 G T ALPI Silent p.T142T 0.24 TCGA-77-6844-01 2 234113073 234113073 G A INPP5D Missense_Mutation p.E1081K 0.46 tolerated_low_confidence(0.08) possibly_damaging(0.59) TCGA-77-6844-01 2 234680914 234680914 G A UGT1A4 Silent p.K438K 0.36 TCGA-77-6844-01 2 234754429 234754429 C T HJURP Missense_Mutation p.R147K 0.29 deleterious(0) probably_damaging(0.935) TCGA-77-6844-01 2 241813432 241813432 G T AGXT Silent p.L211L 0.28 TCGA-77-6844-01 2 27324473 27324473 C T CGREF1 Missense_Mutation p.G209E 0.35 tolerated(0.06) benign(0.177) TCGA-77-6844-01 2 29366719 29366719 A G CLIP4 Missense_Mutation p.M265V 0.28 tolerated(0.52) benign(0) TCGA-77-6844-01 2 44078871 44078871 G C ABCG8 Silent p.L157L 0.28 TCGA-77-6844-01 2 68613801 68613801 G C PLEK Missense_Mutation p.D214H 0.34 tolerated(0.07) possibly_damaging(0.764) TCGA-77-6844-01 2 89619839 89619839 C A IGKV1-39 Missense_Mutation p.A7S 0.15 tolerated(0.17) benign(0.012) TCGA-77-6844-01 2 95952946 95952946 C T PROM2 Silent p.A720A 0.31 TCGA-77-6844-01 3 108127129 108127129 C G MYH15 Missense_Mutation p.E1560Q 0.19 deleterious(0.02) probably_damaging(1) TCGA-77-6844-01 3 112989705 112989705 A T BOC Missense_Mutation p.D194V 0.24 deleterious(0) probably_damaging(1) TCGA-77-6844-01 3 113377100 113377100 C A KIAA2018 Missense_Mutation p.Q1143H 0.17 benign(0.011) TCGA-77-6844-01 3 142503616 142503616 G A TRPC1 Missense_Mutation p.R344H 0.24 deleterious(0) possibly_damaging(0.904) TCGA-77-6844-01 3 142548680 142548680 A G PCOLCE2 Missense_Mutation p.V240A 0.19 tolerated(0.06) benign(0.217) TCGA-77-6844-01 3 169664007 169664007 C A RP11-379K17.4 RNA 0.27 TCGA-77-6844-01 3 169664008 169664008 C T RP11-379K17.4 RNA 0.26 TCGA-77-6844-01 3 180397228 180397228 G C CCDC39 5'UTR 0.15 TCGA-77-6844-01 3 183777815 183777815 C T HTR3C Silent p.T375T 0.15 TCGA-77-6844-01 3 184008125 184008125 G T ECE2 Missense_Mutation p.R663L 0.16 deleterious(0.01) benign(0.327) TCGA-77-6844-01 3 192973513 192973513 G A HRASLS Missense_Mutation p.R130H 0.18 deleterious(0.02) probably_damaging(1) TCGA-77-6844-01 3 38674671 38674671 C T SCN5A Missense_Mutation p.R43Q 0.42 tolerated(0.19) benign(0.394) TCGA-77-6844-01 3 52380582 52380582 A T DNAH1 Missense_Mutation p.Y584F 0.50 benign(0.223) TCGA-77-6844-01 3 52557585 52557585 C A STAB1 Missense_Mutation p.A2428D 0.48 tolerated(0.63) benign(0.12) TCGA-77-6844-01 3 57613856 57613856 G A DENND6A 3'UTR 0.50 TCGA-77-6844-01 4 107246153 107246153 G T AIMP1 Missense_Mutation p.R20L 0.25 deleterious(0.03) benign(0.156) TCGA-77-6844-01 4 126238484 126238484 G T FAT4 Silent p.T306T 0.19 TCGA-77-6844-01 4 155719379 155719379 G T RBM46 Nonsense_Mutation p.E190* 0.38 TCGA-77-6844-01 4 159592854 159592854 G A C4orf46 Missense_Mutation p.P34S 0.37 tolerated_low_confidence(0.08) benign(0.093) TCGA-77-6844-01 4 166009746 166009746 C T TMEM192 Missense_Mutation p.V150M 0.25 tolerated(0.1) benign(0.023) TCGA-77-6844-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.30 deleterious(0.01) possibly_damaging(0.594) TCGA-77-6844-01 4 3224131 3224131 C G HTT Missense_Mutation p.Q2463E 0.32 probably_damaging(0.989) TCGA-77-6844-01 4 55575646 55575646 C T KIT Missense_Mutation p.T391I 0.29 deleterious(0.03) benign(0.195) TCGA-77-6844-01 4 6114508 6114508 C A JAKMIP1 Nonsense_Mutation p.E24* 0.29 TCGA-77-6844-01 4 65175609 65175609 G T TECRL Missense_Mutation p.L198I 0.22 tolerated(0.15) benign(0.024) TCGA-77-6844-01 4 65175610 65175610 G T TECRL Nonsense_Mutation p.Y197* 0.22 TCGA-77-6844-01 4 6863664 6863664 T G KIAA0232 Missense_Mutation p.L519V 0.18 deleterious(0) probably_damaging(0.998) TCGA-77-6844-01 4 71629376 71629376 C A RUFY3 Missense_Mutation p.P154T 0.39 deleterious(0.01) benign(0.022) TCGA-77-6844-01 5 11110976 11110976 T - CTNND2 Frame_Shift_Del p.D820Ifs*6 0.15 TCGA-77-6844-01 5 132409750 132409750 G A HSPA4 Missense_Mutation p.V199I 0.47 tolerated(0.29) benign(0.344) TCGA-77-6844-01 5 13807728 13807728 G A DNAH5 Missense_Mutation p.S2620F 0.17 possibly_damaging(0.788) TCGA-77-6844-01 5 140208648 140208648 C A PCDHA6 Missense_Mutation p.D324E 0.40 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-77-6844-01 5 140248901 140248901 T A PCDHA11 Missense_Mutation p.H71Q 0.43 deleterious_low_confidence(0.03) benign(0.132) TCGA-77-6844-01 5 140248902 140248902 G T PCDHA11 Missense_Mutation p.G72W 0.43 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-77-6844-01 5 167895998 167895998 A C WWC1 Silent p.P1112P 0.44 TCGA-77-6844-01 5 180057290 180057290 T C FLT4 Missense_Mutation p.R150G 0.32 tolerated(0.16) benign(0.04) TCGA-77-6844-01 5 24511592 24511592 G T CDH10 Silent p.S282S 0.16 TCGA-77-6844-01 5 33561194 33561194 C G ADAMTS12 Missense_Mutation p.D1355H 0.59 deleterious(0.02) probably_damaging(0.977) TCGA-77-6844-01 5 33576995 33576995 G T ADAMTS12 Missense_Mutation p.P1046T 0.80 tolerated(0.6) benign(0.002) TCGA-77-6844-01 5 37358198 37358198 C T NUP155 Missense_Mutation p.V150M 0.14 deleterious(0) probably_damaging(0.997) TCGA-77-6844-01 5 37364088 37364088 T A NUP155 Splice_Site p.X99_splice 0.78 TCGA-77-6844-01 5 38502870 38502870 G C LIFR Nonsense_Mutation p.S490* 0.14 TCGA-77-6844-01 5 40852462 40852462 C T CARD6 Missense_Mutation p.S343L 0.16 tolerated(0.25) benign(0.008) TCGA-77-6844-01 5 75964530 75964530 C A IQGAP2 Missense_Mutation p.L902M 0.50 deleterious(0) probably_damaging(1) TCGA-77-6844-01 6 107390075 107390075 G A BEND3 Missense_Mutation p.P774S 0.29 deleterious(0.01) probably_damaging(1) TCGA-77-6844-01 6 110300773 110300773 C T GPR6 Missense_Mutation p.A153V 0.05 deleterious(0.01) benign(0.253) TCGA-77-6844-01 6 133097538 133097538 C A SLC18B1 Missense_Mutation p.V276L 0.27 tolerated(0.13) benign(0.267) TCGA-77-6844-01 6 136596800 136596800 T G BCLAF1 Silent p.T574T 0.19 TCGA-77-6844-01 6 136977484 136977484 G A MAP3K5 Silent p.V547V 0.25 TCGA-77-6844-01 6 148855026 148855026 G A SASH1 Silent p.E618E 0.06 TCGA-77-6844-01 6 25917226 25917226 C G SLC17A2 Missense_Mutation p.E247Q 0.13 deleterious(0.01) possibly_damaging(0.856) TCGA-77-6844-01 6 32820937 32820937 G A TAP1 Silent p.S219S 0.25 TCGA-77-6844-01 6 33768945 33768945 G C MLN Intron 0.41 TCGA-77-6844-01 6 38773271 38773271 G A DNAH8 Missense_Mutation p.V800I 0.30 benign(0.001) TCGA-77-6844-01 6 41160098 41160098 C G TREML2 3'UTR 0.50 TCGA-77-6844-01 6 43752378 43752378 G T VEGFA 3'Flank 0.36 TCGA-77-6844-01 6 49439888 49439888 A T CENPQ Silent p.S90S 0.37 TCGA-77-6844-01 6 5000859 5000859 C A RPP40 Missense_Mutation p.C92F 0.33 tolerated(0.57) benign(0.003) TCGA-77-6844-01 6 55216330 55216330 C A GFRAL Missense_Mutation p.P217H 0.31 deleterious(0.02) benign(0.126) TCGA-77-6844-01 6 72889566 72889566 C A RIMS1 Missense_Mutation p.P254T 0.32 tolerated(0.53) benign(0.11) TCGA-77-6844-01 6 72889568 72889568 T G RIMS1 Silent p.P254P 0.32 TCGA-77-6844-01 6 73843334 73843334 A G KCNQ5 Missense_Mutation p.K499E 0.25 deleterious(0) possibly_damaging(0.842) TCGA-77-6844-01 6 88239278 88239278 C G RARS2 Missense_Mutation p.G287A 0.26 deleterious(0.01) probably_damaging(0.94) TCGA-77-6844-01 6 88854152 88854152 C T CNR1 Missense_Mutation p.G281E 0.29 tolerated(0.12) probably_damaging(0.957) TCGA-77-6844-01 6 97679472 97679472 C T MMS22L Silent p.K453K 0.29 TCGA-77-6844-01 7 100417379 100417379 G C EPHB4 Missense_Mutation p.P366R 0.40 tolerated(0.22) benign(0.255) TCGA-77-6844-01 7 106509291 106509291 C A PIK3CG Missense_Mutation p.L429M 0.24 deleterious(0) probably_damaging(0.998) TCGA-77-6844-01 7 135078854 135078854 C A CNOT4 Missense_Mutation p.Q481H 0.43 tolerated(0.52) benign(0) TCGA-77-6844-01 7 26251823 26251823 C G CBX3 Missense_Mutation p.Q183E 0.23 tolerated_low_confidence(0.08) benign(0.199) TCGA-77-6844-01 7 27182673 27182673 A C HOXA5 Missense_Mutation p.I185R 0.07 deleterious(0.02) benign(0.021) TCGA-77-6844-01 7 38431503 38431503 G - AMPH Frame_Shift_Del p.P575Rfs*35 0.38 TCGA-77-6844-01 7 57194302 57194302 G T ZNF479 Missense_Mutation p.L55M 0.24 deleterious(0) probably_damaging(0.999) TCGA-77-6844-01 7 86415853 86415853 C A GRM3 Missense_Mutation p.R249S 0.33 tolerated(0.16) probably_damaging(0.917) TCGA-77-6844-01 8 101199371 101199371 T C SPAG1 Missense_Mutation p.V242A 0.49 tolerated(0.42) benign(0.058) TCGA-77-6844-01 8 124817561 124817561 G A FAM91A1 Missense_Mutation p.E622K 0.19 tolerated(0.58) benign(0.008) TCGA-77-6844-01 8 144411535 144411535 G A TOP1MT Silent p.F115F 0.27 TCGA-77-6844-01 8 144940328 144940328 C T EPPK1 Missense_Mutation p.R2365H 0.09 possibly_damaging(0.888) TCGA-77-6844-01 8 25702036 25702036 C T EBF2 3'UTR 0.73 TCGA-77-6844-01 8 30209595 30209595 C G TUBBP1 RNA 0.39 TCGA-77-6844-01 8 37689055 37689055 T C GPR124 Silent p.S349S 0.53 TCGA-77-6844-01 8 63492145 63492145 G T NKAIN3 Missense_Mutation p.W34C 0.46 deleterious(0) probably_damaging(1) TCGA-77-6844-01 8 67547558 67547558 G C VCPIP1 Silent p.T949T 0.22 TCGA-77-6844-01 8 70744572 70744572 T C SLCO5A1 Missense_Mutation p.M113V 0.29 tolerated_low_confidence(0.97) benign(0.001) TCGA-77-6844-01 8 72756281 72756281 A T MSC Missense_Mutation p.S45T 0.50 tolerated(0.26) benign(0.007) TCGA-77-6844-01 8 92350403 92350403 A G SLC26A7 Missense_Mutation p.Y274C 0.54 deleterious(0.01) benign(0.066) TCGA-77-6844-01 9 130506973 130506973 G T SH2D3C Missense_Mutation p.T557N 0.45 tolerated(0.51) benign(0.001) TCGA-77-6844-01 9 136409665 136409665 C T ADAMTSL2 Silent p.D252D 0.39 TCGA-77-6844-01 9 33295114 33295117 ACCC TCCCT NFX1 Frame_Shift_Ins p.Y241Ffs*45 0.34 TCGA-77-6844-01 9 35707120 35707120 C G TLN1 Missense_Mutation p.G1635A 0.57 tolerated(0.27) benign(0.139) TCGA-77-6844-01 9 84528423 84528423 C A SPATA31D5P RNA 0.30 TCGA-77-6844-01 9 90534159 90534160 - TCTTGTCTCCCAGCGTCA SPATA31C1 Intron 0.12 TCGA-77-6844-01 9 91993666 91993666 C T SEMA4D Missense_Mutation p.V848I 0.34 tolerated(0.08) possibly_damaging(0.487) TCGA-77-6844-01 X 135432520 135432520 A C GPR112 Missense_Mutation p.T2219P 0.74 deleterious(0) probably_damaging(0.933) TCGA-77-6844-01 X 75651180 75651180 G C MAGEE1 Missense_Mutation p.V953L 0.45 deleterious_low_confidence(0) benign(0.055) TCGA-77-6844-01 X 78216308 78216308 C A P2RY10 Missense_Mutation p.H97Q 0.64 tolerated(0.08) benign(0.035) TCGA-77-6845-01 10 102824707 102824707 G A KAZALD1 3'UTR 0.67 TCGA-77-6845-01 10 108432720 108432720 C A SORCS1 Missense_Mutation p.R655L 0.55 tolerated(0.05) benign(0.2) TCGA-77-6845-01 10 1090099 1090099 C G IDI1 Missense_Mutation p.Q51H 0.32 tolerated_low_confidence(0.79) benign(0.004) TCGA-77-6845-01 10 126523272 126523272 G A FAM175B Missense_Mutation p.R327K 0.32 deleterious(0.05) benign(0.029) TCGA-77-6845-01 10 126523306 126523306 C A FAM175B Silent p.G338G 0.30 TCGA-77-6845-01 10 127455490 127455490 G A MMP21 Missense_Mutation p.S484F 0.48 tolerated(0.08) probably_damaging(0.944) TCGA-77-6845-01 10 131671840 131671840 G T EBF3 Silent p.V219V 0.54 TCGA-77-6845-01 10 27326179 27326193 ATTCCATCTTGTAAC - ANKRD26 In_Frame_Del p.M873_G877del 0.14 TCGA-77-6845-01 10 31810578 31810578 G T ZEB1 Missense_Mutation p.C773F 0.64 tolerated(0.28) probably_damaging(0.997) TCGA-77-6845-01 10 38345405 38345405 T C ZNF33A Missense_Mutation p.F785L 0.05 tolerated(0.66) benign(0) TCGA-77-6845-01 10 50531678 50531678 G T C10orf71 Missense_Mutation p.G363V 0.37 deleterious(0.02) probably_damaging(0.984) TCGA-77-6845-01 10 50678597 50678597 T C ERCC6 Missense_Mutation p.K1137E 0.27 tolerated(0.88) benign(0) TCGA-77-6845-01 10 50827907 50827907 T A CHAT Missense_Mutation p.L175H 0.19 tolerated(0.08) benign(0.102) TCGA-77-6845-01 10 64573573 64573573 G C EGR2 Silent p.G275G 0.44 TCGA-77-6845-01 10 67680252 67680252 G T CTNNA3 Silent p.R842R 0.49 TCGA-77-6845-01 10 67680253 67680253 G T CTNNA3 Silent p.P841P 0.48 TCGA-77-6845-01 10 82363460 82363460 C A SH2D4B Silent p.R257R 0.28 TCGA-77-6845-01 10 86130785 86130785 A T CCSER2 5'UTR 0.27 TCGA-77-6845-01 10 95085619 95085619 C G MYOF Missense_Mutation p.R1745S 0.50 deleterious(0) probably_damaging(0.999) TCGA-77-6845-01 10 95720084 95720084 C G PIPSL RNA 0.51 TCGA-77-6845-01 10 96053344 96053344 G T PLCE1 Silent p.P1705P 0.34 TCGA-77-6845-01 11 101849139 101849139 G C KIAA1377 Missense_Mutation p.Q969H 0.15 tolerated(0.07) benign(0.258) TCGA-77-6845-01 11 108142121 108142121 T C ATM Missense_Mutation p.I1022T 0.27 deleterious(0.01) benign(0.185) TCGA-77-6845-01 11 114453125 114453125 C G NXPE4 Missense_Mutation p.E239Q 0.22 deleterious(0.04) probably_damaging(0.988) TCGA-77-6845-01 11 117375652 117375652 C A DSCAML1 Missense_Mutation p.W783C 0.16 deleterious(0) probably_damaging(0.986) TCGA-77-6845-01 11 117375653 117375653 C A DSCAML1 Missense_Mutation p.W783L 0.17 deleterious(0.02) benign(0.22) TCGA-77-6845-01 11 118827639 118827639 G - UPK2 Frame_Shift_Del p.E42Rfs*19 0.24 TCGA-77-6845-01 11 123810657 123810657 A G OR4D5 Missense_Mutation p.I112V 0.12 tolerated(0.78) benign(0.005) TCGA-77-6845-01 11 124189573 124189573 A C OR8D2 Missense_Mutation p.V174G 0.20 deleterious(0) possibly_damaging(0.857) TCGA-77-6845-01 11 124267052 124267052 G T OR8B3 Missense_Mutation p.L66I 0.17 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-77-6845-01 11 124861462 124861462 G A CCDC15 Missense_Mutation p.D672N 0.23 tolerated(0.5) benign(0.026) TCGA-77-6845-01 11 17981078 17981078 G T SERGEF Missense_Mutation p.P317H 0.16 tolerated(0.14) benign(0.021) TCGA-77-6845-01 11 18955714 18955714 G T MRGPRX1 Silent p.S206S 0.39 TCGA-77-6845-01 11 30033941 30033944 GGCT - KCNA4 Frame_Shift_Del p.K94Nfs*14 0.33 TCGA-77-6845-01 11 46404182 46404182 G A MDK Missense_Mutation p.G97D 0.36 tolerated(0.54) benign(0.346) TCGA-77-6845-01 11 49204699 49204699 A T FOLH1 Splice_Site p.X307_splice 0.38 TCGA-77-6845-01 11 5173252 5173252 G A OR52A1 Silent p.I116I 0.38 TCGA-77-6845-01 11 55579017 55579017 C A OR5L1 Silent p.V25V 0.40 TCGA-77-6845-01 11 55579083 55579083 A T OR5L1 Silent p.A47A 0.41 TCGA-77-6845-01 11 57971269 57971269 C A OR1S2 Missense_Mutation p.G129W 0.33 deleterious(0) probably_damaging(1) TCGA-77-6845-01 11 58170649 58170649 G A OR5B3 Silent p.I78I 0.41 TCGA-77-6845-01 11 63963246 63963246 A G STIP1 Silent p.P211P 0.33 TCGA-77-6845-01 11 64536806 64536806 C T SF1 Missense_Mutation p.R348K 0.42 tolerated(0.17) benign(0.089) TCGA-77-6845-01 11 65269715 65269715 T G MALAT1 RNA 0.06 TCGA-77-6845-01 11 65726397 65726397 C G SART1 5'Flank 0.36 TCGA-77-6845-01 11 68193625 68193625 G A LRP5 Missense_Mutation p.A1203T 0.65 tolerated(0.1) benign(0.022) TCGA-77-6845-01 11 68748189 68748189 G T MRGPRD Silent p.P89P 0.49 TCGA-77-6845-01 11 7064449 7064449 G A NLRP14 Missense_Mutation p.A398T 0.03 tolerated(0.17) benign(0.209) TCGA-77-6845-01 11 92538417 92538417 T G FAT3 Missense_Mutation p.F2999V 0.06 benign(0.043) TCGA-77-6845-01 11 99690430 99690430 G T CNTN5 Missense_Mutation p.G71W 0.13 deleterious_low_confidence(0.02) possibly_damaging(0.554) TCGA-77-6845-01 12 10213846 10213846 C A CLEC9A Missense_Mutation p.A98D 0.51 tolerated(0.06) benign(0.043) TCGA-77-6845-01 12 106532255 106532255 C A NUAK1 Missense_Mutation p.E59D 0.80 deleterious(0) probably_damaging(0.992) TCGA-77-6845-01 12 108686099 108686099 T C CMKLR1 Missense_Mutation p.Y214C 0.29 tolerated(0.16) benign(0.276) TCGA-77-6845-01 12 109687873 109687876 CTCT - ACACB Frame_Shift_Del p.S1919Wfs*12 0.24 TCGA-77-6845-01 12 117768488 117768488 G T NOS1 Silent p.P129P 0.20 TCGA-77-6845-01 12 122862333 122862334 - ACTGGCCTGG CLIP1 Frame_Shift_Ins p.W87Sfs*11 0.21 TCGA-77-6845-01 12 130839465 130839465 G A PIWIL1 Missense_Mutation p.V402M 0.23 tolerated(0.21) benign(0.082) TCGA-77-6845-01 12 1994215 1994215 T A CACNA2D4 Missense_Mutation p.M366L 0.52 tolerated(0.66) benign(0) TCGA-77-6845-01 12 20876146 20876146 C A SLCO1C1 Missense_Mutation p.Q382K 0.49 deleterious(0) probably_damaging(0.964) TCGA-77-6845-01 12 27058354 27058354 G C ASUN 3'UTR 0.43 TCGA-77-6845-01 12 40076745 40076745 A G C12orf40 Missense_Mutation p.H340R 0.29 tolerated(0.2) benign(0.005) TCGA-77-6845-01 12 40699722 40699734 AACTTTGATTTTA - LRRK2 Frame_Shift_Del p.F1306Ifs*2 0.24 TCGA-77-6845-01 12 41337841 41337841 G T CNTN1 Missense_Mutation p.V518F 0.19 deleterious(0.01) probably_damaging(0.979) TCGA-77-6845-01 12 43822148 43822148 G A ADAMTS20 Silent p.L1281L 0.20 TCGA-77-6845-01 12 43826208 43826208 G T ADAMTS20 Missense_Mutation p.H999N 0.31 tolerated(0.5) possibly_damaging(0.457) TCGA-77-6845-01 12 45168586 45168586 C T NELL2 Missense_Mutation p.C363Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-77-6845-01 12 53242558 53242558 C A KRT78 Missense_Mutation p.G53W 0.48 deleterious(0.02) probably_damaging(0.965) TCGA-77-6845-01 12 55356301 55356301 G A TESPA1 Nonsense_Mutation p.Q461* 0.54 TCGA-77-6845-01 12 56531103 56531103 G C ESYT1 Silent p.V638V 0.31 TCGA-77-6845-01 12 57619552 57619552 G T NXPH4 3'UTR 0.17 TCGA-77-6845-01 12 57843386 57843386 G C INHBC Missense_Mutation p.G214R 0.16 tolerated(0.11) benign(0.033) TCGA-77-6845-01 12 66638297 66638297 C T IRAK3 Missense_Mutation p.P307S 0.72 deleterious(0) probably_damaging(0.965) TCGA-77-6845-01 12 68051030 68051030 G A DYRK2 Missense_Mutation p.G115S 0.78 tolerated_low_confidence(0.64) benign(0.002) TCGA-77-6845-01 12 77423773 77423773 A T E2F7 Missense_Mutation p.D574E 0.73 tolerated(0.42) benign(0.007) TCGA-77-6845-01 12 81111245 81111245 C T MYF5 Nonsense_Mutation p.Q135* 0.27 TCGA-77-6845-01 12 85411277 85411277 T C TSPAN19 Silent p.R184R 0.55 TCGA-77-6845-01 12 97345752 97345752 G C NEDD1 Missense_Mutation p.R642T 0.75 deleterious(0) probably_damaging(0.999) TCGA-77-6845-01 13 33703800 33703800 G A STARD13 Silent p.H338H 0.27 TCGA-77-6845-01 13 36886492 36886492 C T SPG20 Missense_Mutation p.D536N 0.79 deleterious(0) possibly_damaging(0.661) TCGA-77-6845-01 13 67802506 67802506 C A PCDH9 Missense_Mutation p.A23S 0.89 tolerated(0.08) possibly_damaging(0.562) TCGA-77-6845-01 14 20344786 20344786 T C OR4K2 Silent p.F120F 0.23 TCGA-77-6845-01 14 20612052 20612052 C A OR4N5 Missense_Mutation p.P53H 0.40 tolerated(0.09) benign(0.076) TCGA-77-6845-01 14 21109217 21109217 A T OR6S1 Missense_Mutation p.S212T 0.40 tolerated(0.47) benign(0.021) TCGA-77-6845-01 14 21526054 21526054 G A RNASE8 Translation_Start_Site p.M1? 0.11 deleterious(0) probably_damaging(0.997) TCGA-77-6845-01 14 22675781 22675781 G A TRAV34 Silent p.L31L 0.44 TCGA-77-6845-01 14 24642549 24642549 G A REC8 Missense_Mutation p.D131N 0.38 tolerated(0.27) possibly_damaging(0.631) TCGA-77-6845-01 14 52417389 52417389 G T GNG2 5'UTR 0.18 TCGA-77-6845-01 14 54955683 54955683 G C GMFB 5'UTR 0.52 TCGA-77-6845-01 14 80668572 80668572 A G DIO2 3'Flank 0.68 TCGA-77-6845-01 14 89172750 89172750 T C EML5 Missense_Mutation p.I560V 0.35 tolerated(1) benign(0.001) TCGA-77-6845-01 14 89338737 89338737 C G TTC8 Missense_Mutation p.H430D 0.31 deleterious(0.01) probably_damaging(0.964) TCGA-77-6845-01 14 90651251 90651251 G A KCNK13 Silent p.Q377Q 0.18 TCGA-77-6845-01 14 94964516 94964516 G T SERPINA12 Missense_Mutation p.F73L 0.47 tolerated(0.11) benign(0.057) TCGA-77-6845-01 15 25436399 25436399 G T SNORD115-11 3'Flank 0.50 TCGA-77-6845-01 15 34520015 34520015 G C EMC4 Missense_Mutation p.R108P 0.44 deleterious(0) probably_damaging(0.999) TCGA-77-6845-01 15 41816393 41816393 T C RPAP1 Missense_Mutation p.H712R 0.50 tolerated(0.65) benign(0.001) TCGA-77-6845-01 15 54307768 54307768 G C UNC13C Missense_Mutation p.E890Q 0.23 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-77-6845-01 15 65622940 65622940 G T IGDCC3 Silent p.T567T 0.22 TCGA-77-6845-01 15 88476247 88476247 G A NTRK3 Missense_Mutation p.L629F 0.54 deleterious(0) probably_damaging(1) TCGA-77-6845-01 16 18870913 18870913 C T SMG1 Silent p.P1306P 0.13 TCGA-77-6845-01 16 24185897 24185897 T A PRKCB Missense_Mutation p.Y464N 0.48 deleterious(0) probably_damaging(0.989) TCGA-77-6845-01 16 2752417 2752417 G A KCTD5 Missense_Mutation p.V205M 0.49 deleterious(0) probably_damaging(1) TCGA-77-6845-01 16 28468197 28468197 T A NPIPB7 Missense_Mutation p.T265S 0.39 deleterious_low_confidence(0.04) probably_damaging(0.996) TCGA-77-6845-01 16 50759404 50759404 G T NOD2 Nonsense_Mutation p.E963* 0.63 TCGA-77-6845-01 16 58319974 58319974 A G PRSS54 Missense_Mutation p.I130T 0.11 deleterious(0) probably_damaging(0.988) TCGA-77-6845-01 16 69406247 69406247 A C TERF2 Missense_Mutation p.I164M 0.44 tolerated(0.15) probably_damaging(0.991) TCGA-77-6845-01 16 71163605 71163605 T G HYDIN Silent p.R389R 0.54 TCGA-77-6845-01 16 83816971 83816971 G C CDH13 Missense_Mutation p.R723S 0.13 deleterious(0) benign(0.228) TCGA-77-6845-01 17 37263689 37263689 C G PLXDC1 Missense_Mutation p.D228H 0.17 deleterious(0) possibly_damaging(0.896) TCGA-77-6845-01 17 3947561 3947561 A C ZZEF1 Missense_Mutation p.I2041M 0.74 tolerated_low_confidence(0.1) benign(0.104) TCGA-77-6845-01 17 41222970 41222970 A T BRCA1 Missense_Mutation p.V1675E 0.85 deleterious(0.01) possibly_damaging(0.848) TCGA-77-6845-01 17 48166564 48166564 G C ITGA3 Missense_Mutation p.G1046R 0.88 tolerated_low_confidence(0.07) benign(0.02) TCGA-77-6845-01 17 7577142 7577142 C A TP53 Nonsense_Mutation p.G266* 0.79 TCGA-77-6845-01 17 79287711 79287711 G A TMEM105 Missense_Mutation p.R44W 0.15 tolerated_low_confidence(0.12) possibly_damaging(0.835) TCGA-77-6845-01 18 15323352 15323352 T C RNU6-721P 5'Flank 0.09 TCGA-77-6845-01 18 66504215 66504215 A G CCDC102B Missense_Mutation p.E72G 0.10 deleterious(0.02) probably_damaging(0.998) TCGA-77-6845-01 18 72914257 72914257 G C ZADH2 Missense_Mutation p.A83G 0.24 deleterious(0.02) possibly_damaging(0.794) TCGA-77-6845-01 18 7774267 7774267 C G PTPRM Nonsense_Mutation p.S65* 0.31 TCGA-77-6845-01 19 10418944 10418944 C G ZGLP1 Missense_Mutation p.E138D 0.29 tolerated(0.1) benign(0.135) TCGA-77-6845-01 19 10602637 10602637 G T KEAP1 Missense_Mutation p.T314K 0.69 tolerated(0.3) benign(0.027) TCGA-77-6845-01 19 18273315 18273315 A T PIK3R2 Missense_Mutation p.R370W 0.36 deleterious(0.01) probably_damaging(1) TCGA-77-6845-01 19 21934205 21934205 C T ZNF100 Intron 0.27 TCGA-77-6845-01 19 31039806 31039806 G T ZNF536 Missense_Mutation p.G1094C 0.60 deleterious_low_confidence(0.01) possibly_damaging(0.528) TCGA-77-6845-01 19 33428538 33428538 T A CEP89 Silent p.P222P 0.89 TCGA-77-6845-01 19 35232479 35232479 T C ZNF181 Missense_Mutation p.I398T 0.41 deleterious(0.04) probably_damaging(0.979) TCGA-77-6845-01 19 35614395 35614395 C G FXYD3 3'UTR 0.13 TCGA-77-6845-01 19 38160702 38160702 A C ZNF781 Silent p.P116P 0.18 TCGA-77-6845-01 19 39303127 39303131 CCCGC - LGALS4 Frame_Shift_Del p.G25Afs*43 0.90 TCGA-77-6845-01 19 42474403 42474403 G T ATP1A3 Missense_Mutation p.P839T 0.75 deleterious(0) probably_damaging(1) TCGA-77-6845-01 19 42753378 42753378 C A ERF Missense_Mutation p.G296C 0.38 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-77-6845-01 19 57088602 57088602 G A ZNF470 Missense_Mutation p.A269T 0.14 tolerated(0.36) probably_damaging(0.981) TCGA-77-6845-01 19 6848014 6848014 C T VAV1 Missense_Mutation p.A673V 0.85 tolerated(0.07) probably_damaging(0.972) TCGA-77-6845-01 1 111889594 111889594 C A PIFO Missense_Mutation p.P28T 0.30 deleterious(0.03) probably_damaging(1) TCGA-77-6845-01 1 118424493 118424493 C G GDAP2 Missense_Mutation p.K418N 0.31 deleterious(0) probably_damaging(0.999) TCGA-77-6845-01 1 118658008 118658008 C A SPAG17 Silent p.L124L 0.37 TCGA-77-6845-01 1 12429610 12429610 A T VPS13D Missense_Mutation p.D3554V 0.76 probably_damaging(0.996) TCGA-77-6845-01 1 144931268 144931268 C T PDE4DIP Intron 0.16 TCGA-77-6845-01 1 152777651 152777651 C A LCE1C Missense_Mutation p.G102C 0.70 deleterious_low_confidence(0) unknown(0) TCGA-77-6845-01 1 152800138 152800138 G C LCE1A Missense_Mutation p.G64R 0.62 tolerated_low_confidence(0.06) unknown(0) TCGA-77-6845-01 1 153065958 153065958 G T SPRR2E 3'UTR 0.71 TCGA-77-6845-01 1 153065959 153065959 G C SPRR2E 3'UTR 0.71 TCGA-77-6845-01 1 161953611 161953611 G A OLFML2B Missense_Mutation p.H703Y 0.18 deleterious(0) probably_damaging(1) TCGA-77-6845-01 1 162725023 162725023 G C DDR2 Silent p.R165R 0.64 TCGA-77-6845-01 1 163043348 163043348 C G RGS4 Missense_Mutation p.S202C 0.54 deleterious(0.01) benign(0.019) TCGA-77-6845-01 1 166815901 166815901 A T POGK Missense_Mutation p.E62V 0.18 deleterious_low_confidence(0.02) benign(0.084) TCGA-77-6845-01 1 171756947 171756947 G T METTL13 Missense_Mutation p.G396C 0.16 deleterious(0) probably_damaging(1) TCGA-77-6845-01 1 175375757 175375757 G A TNR Nonsense_Mutation p.Q32* 0.74 TCGA-77-6845-01 1 176659345 176659345 A G PAPPA2 Missense_Mutation p.H737R 0.68 deleterious(0) probably_damaging(1) TCGA-77-6845-01 1 209964151 209964151 C A IRF6 Missense_Mutation p.R250L 0.90 deleterious(0.04) probably_damaging(0.997) TCGA-77-6845-01 1 248550952 248550952 A T OR2T6 Missense_Mutation p.M15L 0.16 tolerated(1) benign(0) TCGA-77-6845-01 1 25883677 25883677 C A LDLRAP1 Missense_Mutation p.D126E 0.75 deleterious(0.04) benign(0.217) TCGA-77-6845-01 1 26361912 26361912 C T EXTL1 3'UTR 0.93 TCGA-77-6845-01 1 31654778 31654778 G C NKAIN1 Missense_Mutation p.I181M 0.75 tolerated(0.06) possibly_damaging(0.866) TCGA-77-6845-01 1 41984080 41984080 G A HIVEP3 Silent p.A1821A 0.19 TCGA-77-6845-01 1 46032622 46032623 CG - AKR1A1 Frame_Shift_Del p.R96Efs*5 0.42 TCGA-77-6845-01 1 46182632 46182632 T C IPP Missense_Mutation p.N415S 0.50 deleterious(0.02) probably_damaging(0.951) TCGA-77-6845-01 1 47755219 47755219 T A STIL Missense_Mutation p.Y304F 0.23 tolerated(0.12) probably_damaging(0.979) TCGA-77-6845-01 1 77528800 77528801 - GGCA ST6GALNAC5 Frame_Shift_Ins p.R309Gfs*24 0.31 TCGA-77-6845-01 1 78098308 78098308 A G ZZZ3 Silent p.D244D 0.36 TCGA-77-6845-01 1 78601500 78601500 C G GIPC2 3'UTR 0.32 TCGA-77-6845-01 1 91989767 91989767 C T CDC7 Silent p.L500L 0.20 TCGA-77-6845-01 20 1961067 1961067 G T PDYN Missense_Mutation p.Q223K 0.39 deleterious(0) probably_damaging(0.957) TCGA-77-6845-01 20 2442303 2442303 A C SNRPB 3'UTR 0.41 TCGA-77-6845-01 20 31946877 31946877 G C CDK5RAP1 Missense_Mutation p.T579S 0.37 tolerated(0.93) benign(0.012) TCGA-77-6845-01 20 47247286 47247286 T C PREX1 Missense_Mutation p.T1525A 0.30 tolerated(0.06) benign(0.021) TCGA-77-6845-01 21 11012962 11012962 C T TPTE RNA 0.13 TCGA-77-6845-01 21 11038894 11038894 T A BAGE2 RNA 0.08 TCGA-77-6845-01 21 43221457 43221457 C G PRDM15 Missense_Mutation p.Q1489H 0.59 deleterious_low_confidence(0.01) benign(0.001) TCGA-77-6845-01 22 17072079 17072079 C T CCT8L2 Silent p.E454E 0.48 TCGA-77-6845-01 22 19127179 19127179 T A DGCR14 Missense_Mutation p.S212C 0.31 deleterious(0.01) benign(0.075) TCGA-77-6845-01 22 19127180 19127180 G A DGCR14 Silent p.A211A 0.30 TCGA-77-6845-01 22 23264835 23264835 C A IGLC7 Missense_Mutation p.A24D 0.25 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-77-6845-01 22 30032831 30032831 A G NF2 Missense_Mutation p.K69R 0.33 tolerated(0.06) possibly_damaging(0.594) TCGA-77-6845-01 22 30983340 30983341 - CTCGCT PES1 In_Frame_Ins p.S99_E100dup 0.08 TCGA-77-6845-01 22 40814683 40814683 T C MKL1 Missense_Mutation p.S587G 0.39 tolerated(0.12) probably_damaging(0.914) TCGA-77-6845-01 22 45804645 45804645 T - SMC1B Frame_Shift_Del p.I82Lfs*31 0.23 TCGA-77-6845-01 2 103136344 103136344 G T SLC9A4 Missense_Mutation p.R583I 0.48 tolerated(0.06) possibly_damaging(0.486) TCGA-77-6845-01 2 109382002 109382002 G C RANBP2 Missense_Mutation p.W1669C 0.32 deleterious(0) benign(0.004) TCGA-77-6845-01 2 113736901 113736901 A T IL36G Silent p.P53P 0.34 TCGA-77-6845-01 2 125175048 125175048 G T CNTNAP5 Missense_Mutation p.S137I 0.45 deleterious(0) probably_damaging(0.974) TCGA-77-6845-01 2 130951506 130951506 G C TUBA3E Silent p.V303V 0.04 TCGA-77-6845-01 2 135711707 135711707 A G CCNT2 Missense_Mutation p.K561R 0.35 tolerated(0.59) benign(0.015) TCGA-77-6845-01 2 167055599 167055599 C AAA SCN9A Frame_Shift_Ins p.L1839Ffs*36 0.22 TCGA-77-6845-01 2 169713225 169713225 C A NOSTRIN Nonsense_Mutation p.Y387* 0.21 TCGA-77-6845-01 2 171807844 171807844 G T GORASP2 Missense_Mutation p.D148Y 0.44 deleterious(0) probably_damaging(1) TCGA-77-6845-01 2 179413145 179413145 A G TTN Missense_Mutation p.C31070R 0.26 TCGA-77-6845-01 2 179483391 179483391 T G TTN Missense_Mutation p.K15629T 0.08 TCGA-77-6845-01 2 179583619 179583619 C G TTN Missense_Mutation p.G8103A 0.24 TCGA-77-6845-01 2 179659753 179659753 C T TTN Missense_Mutation p.G381S 0.43 TCGA-77-6845-01 2 192012836 192012836 G - STAT4 Frame_Shift_Del p.H32Ifs*30 0.40 TCGA-77-6845-01 2 202070681 202070681 T G CASP10 Silent p.S266S 0.07 TCGA-77-6845-01 2 21224946 21224946 C T APOB Missense_Mutation p.E4450K 0.17 benign(0.036) TCGA-77-6845-01 2 239140813 239140813 A T AC016757.3 5'Flank 0.78 TCGA-77-6845-01 2 24291318 24291318 G T SF3B14 Missense_Mutation p.P54H 0.29 deleterious(0.03) possibly_damaging(0.864) TCGA-77-6845-01 2 30993209 30993209 C T CAPN13 Nonsense_Mutation p.W165* 0.15 TCGA-77-6845-01 2 32476250 32476250 C T NLRC4 Missense_Mutation p.R228K 0.04 tolerated(0.93) benign(0.006) TCGA-77-6845-01 2 3691096 3691096 C T COLEC11 Nonsense_Mutation p.Q145* 0.57 TCGA-77-6845-01 2 54839391 54839391 A C SPTBN1 Missense_Mutation p.N132H 0.15 deleterious(0) probably_damaging(0.999) TCGA-77-6845-01 2 67637329 67637329 G A ETAA1 3'UTR 0.43 TCGA-77-6845-01 2 68872926 68872926 A G PROKR1 5'UTR 0.23 TCGA-77-6845-01 2 79971547 79971547 C A CTNNA2 Missense_Mutation p.P46Q 0.32 deleterious(0) probably_damaging(0.94) TCGA-77-6845-01 2 80808907 80808907 C T CTNNA2 Missense_Mutation p.T657I 0.42 deleterious(0.02) probably_damaging(0.983) TCGA-77-6845-01 2 89309614 89309614 A T IGKV1-9 Silent p.A72A 0.50 TCGA-77-6845-01 3 111927121 111927121 G T SLC9C1 Silent p.I630I 0.23 TCGA-77-6845-01 3 112729940 112729945 TCTGTA CTTGATCTT C3orf17 In_Frame_Ins p.V287_N289delinsEDQD 0.18 TCGA-77-6845-01 3 118865492 118865492 C T C3orf30 Silent p.T152T 0.18 TCGA-77-6845-01 3 119099832 119099832 A T ARHGAP31 Missense_Mutation p.R144W 0.33 deleterious(0) probably_damaging(1) TCGA-77-6845-01 3 119459506 119459506 G C MAATS1 Silent p.L548L 0.10 TCGA-77-6845-01 3 124369717 124369717 G C KALRN Silent p.G179G 0.19 TCGA-77-6845-01 3 130095436 130095436 G C COL6A5 Missense_Mutation p.A142P 0.45 deleterious(0) probably_damaging(0.99) TCGA-77-6845-01 3 183995761 183995761 G T ECE2 Missense_Mutation p.R294L 0.79 tolerated(0.69) benign(0.235) TCGA-77-6845-01 3 185960334 185960334 G T DGKG Missense_Mutation p.F595L 0.10 deleterious(0.01) probably_damaging(0.957) TCGA-77-6845-01 3 186301717 186301717 G A DNAJB11 Silent p.E268E 0.09 TCGA-77-6845-01 3 194063144 194063144 C A CPN2 Silent p.L96L 0.18 TCGA-77-6845-01 3 195622190 195622190 G A TNK2 Missense_Mutation p.A33V 0.25 tolerated_low_confidence(0.2) benign(0.135) TCGA-77-6845-01 3 197574801 197574801 G T LRCH3 Missense_Mutation p.R480L 0.39 deleterious(0) probably_damaging(1) TCGA-77-6845-01 3 4759063 4759063 G A ITPR1 Missense_Mutation p.D1691N 0.79 tolerated_low_confidence(0.1) benign(0) TCGA-77-6845-01 3 53804533 53804533 G T CACNA1D Missense_Mutation p.G1353V 0.75 deleterious(0) probably_damaging(1) TCGA-77-6845-01 3 68782205 68782205 T A FAM19A4 3'UTR 0.73 TCGA-77-6845-01 3 97888017 97888017 C A OR5H15 Silent p.I158I 0.31 TCGA-77-6845-01 3 97888018 97888018 C A OR5H15 Missense_Mutation p.H159N 0.31 deleterious(0.01) probably_damaging(0.978) TCGA-77-6845-01 3 98518454 98518454 G C DCBLD2 Missense_Mutation p.S697C 0.20 deleterious(0) possibly_damaging(0.625) TCGA-77-6845-01 4 123107271 123107271 C T KIAA1109 Missense_Mutation p.R147C 0.21 benign(0.386) TCGA-77-6845-01 4 155254602 155254602 C T DCHS2 Missense_Mutation p.G421S 0.68 tolerated(0.65) benign(0.019) TCGA-77-6845-01 4 16760825 16760825 G T LDB2 Missense_Mutation p.T64K 0.37 tolerated(0.37) possibly_damaging(0.589) TCGA-77-6845-01 4 189012486 189012486 C T TRIML2 3'UTR 0.55 TCGA-77-6845-01 4 71201901 71201901 T G CABS1 Missense_Mutation p.I382S 0.80 deleterious(0) benign(0.231) TCGA-77-6845-01 4 90874377 90874377 T G MMRN1 Missense_Mutation p.D1165E 0.79 deleterious(0) probably_damaging(1) TCGA-77-6845-01 5 127624903 127624903 C A FBN2 Missense_Mutation p.G2185C 0.72 deleterious(0) benign(0.429) TCGA-77-6845-01 5 140720327 140720327 G T PCDHGA2 Missense_Mutation p.D597Y 0.76 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-77-6845-01 5 140750918 140750918 G C PCDHGB3 Silent p.V319V 0.71 TCGA-77-6845-01 5 14364870 14364870 G T TRIO Missense_Mutation p.R900L 0.27 probably_damaging(0.991) TCGA-77-6845-01 5 19473392 19473392 G T CDH18 Silent p.P772P 0.34 TCGA-77-6845-01 5 23524529 23524529 T C PRDM9 Missense_Mutation p.V346A 0.08 tolerated(0.3) benign(0.064) TCGA-77-6845-01 5 32230247 32230247 C G MTMR12 Missense_Mutation p.L627F 0.06 deleterious(0) probably_damaging(0.991) TCGA-77-6845-01 5 33947369 33947369 A G SLC45A2 Missense_Mutation p.S423P 0.20 tolerated(0.1) benign(0.114) TCGA-77-6845-01 5 33963909 33963909 G C SLC45A2 Missense_Mutation p.P259A 0.39 tolerated(0.79) benign(0.003) TCGA-77-6845-01 5 7766836 7766836 A G ADCY2 Missense_Mutation p.T711A 0.15 tolerated(1) benign(0.001) TCGA-77-6845-01 6 100896383 100896383 C T SIM1 Missense_Mutation p.D239N 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-77-6845-01 6 108192994 108192994 T A SEC63 Missense_Mutation p.I733L 0.17 tolerated(0.48) benign(0.023) TCGA-77-6845-01 6 118880223 118880223 A G PLN Missense_Mutation p.I47V 0.27 deleterious_low_confidence(0) benign(0.112) TCGA-77-6845-01 6 122779773 122779773 A T SERINC1 Missense_Mutation p.S31R 0.27 deleterious(0.04) benign(0.056) TCGA-77-6845-01 6 135239640 135239640 C T ALDH8A1 Silent p.G459G 0.23 TCGA-77-6845-01 6 148840750 148840750 G A SASH1 Silent p.V310V 0.14 TCGA-77-6845-01 6 152647480 152647503 TCCTGAGTTCCAGAGAAGCCACTT - SYNE1 In_Frame_Del p.K5074_R5081del 0.27 TCGA-77-6845-01 6 153042941 153042941 G T MYCT1 Missense_Mutation p.W87C 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-77-6845-01 6 27215710 27215710 C A PRSS16 Missense_Mutation p.S40R 0.08 tolerated(0.21) benign(0.004) TCGA-77-6845-01 6 30231061 30231061 G T HCG17 Intron 0.67 TCGA-77-6845-01 6 33162398 33162398 T A RXRB 3'UTR 0.40 TCGA-77-6845-01 6 33261026 33261026 G C RGL2 Missense_Mutation p.L592V 0.25 tolerated(0.43) possibly_damaging(0.622) TCGA-77-6845-01 6 38862493 38862493 C G DNAH8 Missense_Mutation p.T2650S 0.22 probably_damaging(0.913) TCGA-77-6845-01 6 41250157 41250157 G T TREM1 Missense_Mutation p.R128S 0.44 tolerated(0.3) benign(0.071) TCGA-77-6845-01 6 41899228 41899228 C T BYSL Nonsense_Mutation p.R267* 0.04 TCGA-77-6845-01 6 49701455 49701455 C A CRISP3 Silent p.G151G 0.26 TCGA-77-6845-01 6 592566 592566 C T EXOC2 Silent p.A365A 0.15 TCGA-77-6845-01 6 70851961 70851961 G A COL19A1 Missense_Mutation p.G522E 0.28 deleterious(0) probably_damaging(1) TCGA-77-6845-01 6 70942367 70942367 C T COL9A1 Missense_Mutation p.G808S 0.50 probably_damaging(1) TCGA-77-6845-01 6 84665099 84665099 G T CYB5R4 Nonsense_Mutation p.E477* 0.48 TCGA-77-6845-01 6 97058566 97058566 C T FHL5 Missense_Mutation p.P208L 0.27 deleterious(0.01) probably_damaging(0.973) TCGA-77-6845-01 7 100681015 100681015 T C MUC17 Silent p.S2106S 0.41 TCGA-77-6845-01 7 100683452 100683452 C T MUC17 Missense_Mutation p.P2919S 0.40 possibly_damaging(0.608) TCGA-77-6845-01 7 107394338 107394338 A T CBLL1 Splice_Site p.X95_splice 0.40 TCGA-77-6845-01 7 112723655 112723655 G T GPR85 3'UTR 0.06 TCGA-77-6845-01 7 143701446 143701446 C G OR6B1 Silent p.A119A 0.47 TCGA-77-6845-01 7 143701876 143701876 A T OR6B1 Missense_Mutation p.I263F 0.42 deleterious(0) probably_damaging(0.987) TCGA-77-6845-01 7 144097346 144097346 G T NOBOX Missense_Mutation p.R302S 0.37 deleterious(0) probably_damaging(1) TCGA-77-6845-01 7 149523003 149523003 C G SSPO RNA 0.42 TCGA-77-6845-01 7 151945152 151945152 T A KMT2C Silent p.S789S 0.05 TCGA-77-6845-01 7 31117713 31117713 G A ADCYAP1R1 Missense_Mutation p.V89I 0.30 tolerated(0.39) benign(0.048) TCGA-77-6845-01 7 33042332 33042332 C T FKBP9 Silent p.L473L 0.21 TCGA-77-6845-01 7 36489371 36489371 T G ANLN Missense_Mutation p.I1059S 0.07 deleterious(0.01) probably_damaging(0.995) TCGA-77-6845-01 7 44104881 44104881 C A PGAM2 Missense_Mutation p.R83L 0.35 tolerated(0.05) possibly_damaging(0.877) TCGA-77-6845-01 7 44804985 44804985 G T ZMIZ2 Silent p.V683V 0.42 TCGA-77-6845-01 7 45750135 45750135 G A ADCY1 Missense_Mutation p.V981I 0.29 tolerated(0.43) probably_damaging(0.999) TCGA-77-6845-01 7 48416104 48416104 G T ABCA13 Missense_Mutation p.W3757L 0.35 probably_damaging(1) TCGA-77-6845-01 7 48416105 48416105 G T ABCA13 Missense_Mutation p.W3757C 0.36 probably_damaging(1) TCGA-77-6845-01 7 50514481 50514481 C A FIGNL1 Missense_Mutation p.D169Y 0.52 tolerated(0.09) benign(0.232) TCGA-77-6845-01 7 54612349 54612349 G A VSTM2A Silent p.A38A 0.38 TCGA-77-6845-01 7 55560037 55560037 G C VOPP1 Missense_Mutation p.P89R 0.50 tolerated(0.05) probably_damaging(0.999) TCGA-77-6845-01 7 7676622 7676622 C T RPA3 3'UTR 0.47 TCGA-77-6845-01 8 101083725 101083725 C T RGS22 Missense_Mutation p.G156S 0.24 deleterious(0.01) probably_damaging(1) TCGA-77-6845-01 8 110477151 110477151 G A PKHD1L1 Missense_Mutation p.G2697D 0.49 tolerated(0.12) benign(0.376) TCGA-77-6845-01 8 113326190 113326190 A C CSMD3 Silent p.L2547L 0.10 TCGA-77-6845-01 8 113649054 113649054 C G CSMD3 Missense_Mutation p.R1236T 0.26 tolerated(0.05) probably_damaging(0.992) TCGA-77-6845-01 8 113933895 113933895 C T CSMD3 Missense_Mutation p.V532I 0.21 tolerated(0.44) probably_damaging(0.919) TCGA-77-6845-01 8 145999528 145999528 T C ZNF34 Missense_Mutation p.H269R 0.09 deleterious(0) possibly_damaging(0.457) TCGA-77-6845-01 8 48842473 48842473 A G PRKDC Silent p.S664S 0.65 TCGA-77-6845-01 9 104307056 104307056 G C RNF20 Silent p.L212L 0.69 TCGA-77-6845-01 9 118950183 118950183 A G PAPPA Missense_Mutation p.Y389C 0.72 deleterious(0) possibly_damaging(0.759) TCGA-77-6845-01 9 125273592 125273592 C T OR1J2 Missense_Mutation p.A171V 0.36 deleterious_low_confidence(0.01) benign(0.067) TCGA-77-6845-01 9 125330725 125330725 G T OR1L8 Missense_Mutation p.S11Y 0.21 deleterious(0.01) probably_damaging(0.928) TCGA-77-6845-01 9 125437790 125437790 A T OR1L3 Missense_Mutation p.N128Y 0.73 tolerated(0.14) benign(0.008) TCGA-77-6845-01 9 127983041 127983041 A G RABEPK Intron 0.75 TCGA-77-6845-01 9 129157982 129157982 G T MVB12B Intron 0.74 TCGA-77-6845-01 9 133760333 133760333 G T ABL1 Missense_Mutation p.G905W 0.60 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-77-6845-01 9 135977120 135977120 C T RALGDS Silent p.P747P 0.76 TCGA-77-6845-01 9 139836051 139836051 C T FBXW5 Silent p.A394A 0.82 TCGA-77-6845-01 9 140008397 140008397 C G DPP7 Silent p.L135L 0.76 TCGA-77-6845-01 9 17332628 17332628 C G CNTLN Missense_Mutation p.S515C 0.73 deleterious(0) probably_damaging(0.999) TCGA-77-6845-01 9 27202853 27202853 A G TEK Missense_Mutation p.N649D 0.70 tolerated(0.28) probably_damaging(0.997) TCGA-77-6845-01 9 5163952 5163952 T C INSL6 Silent p.L201L 0.79 TCGA-77-6845-01 9 73002837 73002837 T A KLF9 Missense_Mutation p.H197L 0.44 deleterious(0) probably_damaging(1) TCGA-77-6845-01 X 102339659 102339659 C A NXF3 Missense_Mutation p.D61Y 0.91 deleterious(0.04) benign(0.022) TCGA-77-6845-01 X 152113822 152113822 A T ZNF185 Missense_Mutation p.D439V 0.94 tolerated(0.45) benign(0.009) TCGA-77-6845-01 X 27839909 27839909 G T MAGEB10 Silent p.L162L 0.62 TCGA-77-6845-01 X 54321217 54321217 C T WNK3 Missense_Mutation p.V488M 0.81 deleterious(0.01) probably_damaging(0.999) TCGA-77-6845-01 X 54784776 54784776 G C ITIH6 Missense_Mutation p.F577L 0.72 tolerated(0.51) benign(0.001) TCGA-77-7139-01 10 105209540 105209540 G A CALHM2 Silent p.N53N 0.59 TCGA-77-7139-01 10 105642476 105642476 A G OBFC1 Missense_Mutation p.V358A 0.24 deleterious(0) benign(0.317) TCGA-77-7139-01 10 115609003 115609003 G A DCLRE1A Nonsense_Mutation p.Q621* 0.59 TCGA-77-7139-01 10 17756757 17756757 A G STAM Missense_Mutation p.Y534C 0.57 deleterious_low_confidence(0) possibly_damaging(0.759) TCGA-77-7139-01 10 3189817 3189817 G T PITRM1 Silent p.R729R 0.45 TCGA-77-7139-01 10 38344861 38344861 T A ZNF33A Missense_Mutation p.H603Q 0.57 deleterious(0) probably_damaging(0.999) TCGA-77-7139-01 10 50680451 50680451 C A ERCC6 Silent p.A965A 0.56 TCGA-77-7139-01 10 6527219 6527219 T C PRKCQ Missense_Mutation p.R305G 0.18 tolerated(0.08) benign(0.003) TCGA-77-7139-01 10 93622757 93622757 A G TNKS2 3'UTR 0.13 TCGA-77-7139-01 10 96493164 96493164 G T CYP2C18 Missense_Mutation p.K420N 0.24 deleterious(0) probably_damaging(0.972) TCGA-77-7139-01 11 100998686 100998686 G A PGR Silent p.D372D 0.33 TCGA-77-7139-01 11 105481716 105481716 G A GRIA4 5'UTR 0.38 TCGA-77-7139-01 11 107299930 107299930 G C CWF19L2 Missense_Mutation p.S343C 0.32 tolerated(0.07) possibly_damaging(0.765) TCGA-77-7139-01 11 107578640 107578640 C T SLN Missense_Mutation p.R6Q 0.27 tolerated_low_confidence(0.38) possibly_damaging(0.553) TCGA-77-7139-01 11 118771650 118771650 C A BCL9L Silent p.S934S 0.37 TCGA-77-7139-01 11 15222419 15222419 G T INSC Missense_Mutation p.R295L 0.81 tolerated(0.09) benign(0.158) TCGA-77-7139-01 11 19735150 19735150 C A NAV2 5'UTR 0.85 TCGA-77-7139-01 11 2610066 2610066 G T KCNQ1 Missense_Mutation p.D459Y 0.74 deleterious(0.01) probably_damaging(0.947) TCGA-77-7139-01 11 35338925 35338925 A G SLC1A2 Silent p.F52F 0.76 TCGA-77-7139-01 11 40137193 40137193 G T LRRC4C Missense_Mutation p.P217Q 0.35 tolerated(0.05) probably_damaging(0.981) TCGA-77-7139-01 11 46418923 46418923 T A AMBRA1 3'UTR 0.40 TCGA-77-7139-01 11 5153745 5153745 C T OR52A5 Missense_Mutation p.G43E 0.69 deleterious(0) probably_damaging(1) TCGA-77-7139-01 11 55035825 55035825 G T TRIM48 Splice_Site p.X186_splice 0.35 TCGA-77-7139-01 11 56756645 56756645 C G OR5AK2 Missense_Mutation p.T86R 0.35 deleterious(0.02) benign(0.019) TCGA-77-7139-01 11 57075927 57075927 C A TNKS1BP1 Nonsense_Mutation p.E1420* 0.34 TCGA-77-7139-01 11 57076712 57076712 G A TNKS1BP1 Missense_Mutation p.S1158L 0.43 tolerated(0.19) benign(0.056) TCGA-77-7139-01 11 57102100 57102100 C A SSRP1 Missense_Mutation p.S26I 0.43 deleterious(0.03) benign(0.091) TCGA-77-7139-01 11 57995923 57995923 C T OR10Q1 Missense_Mutation p.R142H 0.46 tolerated(0.57) benign(0.001) TCGA-77-7139-01 11 59190334 59190334 T A OR5A2 Missense_Mutation p.L31F 0.36 deleterious(0.02) benign(0.043) TCGA-77-7139-01 11 60156925 60156925 C T MS4A7 Silent p.L134L 0.46 TCGA-77-7139-01 11 6292693 6292693 G A CCKBR Missense_Mutation p.D422N 0.68 tolerated(0.08) benign(0.002) TCGA-77-7139-01 11 7982595 7982595 C A NLRP10 Missense_Mutation p.L188F 0.69 deleterious(0.04) benign(0.314) TCGA-77-7139-01 12 123285956 123285956 C T CCDC62 Silent p.P421P 0.39 TCGA-77-7139-01 12 129431890 129431890 G T GLT1D1 Missense_Mutation p.G143W 0.44 deleterious(0) probably_damaging(0.984) TCGA-77-7139-01 12 21614012 21614012 T G PYROXD1 Silent p.L268L 0.52 TCGA-77-7139-01 12 25702264 25702264 G C IFLTD1 Missense_Mutation p.S102R 0.21 deleterious(0.01) possibly_damaging(0.687) TCGA-77-7139-01 12 39760933 39760933 G A KIF21A Missense_Mutation p.R212W 0.26 deleterious(0) probably_damaging(1) TCGA-77-7139-01 12 41966453 41966453 T C PDZRN4 Silent p.C624C 0.43 TCGA-77-7139-01 12 4554491 4554491 G A FGF6 Silent p.I82I 0.18 TCGA-77-7139-01 12 4735681 4735681 T A AKAP3 Missense_Mutation p.D796V 0.45 deleterious(0) probably_damaging(1) TCGA-77-7139-01 12 53218131 53218131 G A KRT79 Nonsense_Mutation p.Q291* 0.51 TCGA-77-7139-01 12 53293592 53293592 C A KRT8 Silent p.R344R 0.54 TCGA-77-7139-01 12 55641520 55641520 G T OR6C74 Missense_Mutation p.G150V 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.873) TCGA-77-7139-01 12 60168918 60168918 C T SLC16A7 Missense_Mutation p.S281L 0.14 deleterious(0.03) probably_damaging(0.928) TCGA-77-7139-01 12 7527118 7527118 G A CD163L1 Missense_Mutation p.S1110F 0.36 deleterious(0) probably_damaging(0.99) TCGA-77-7139-01 13 21331677 21331677 G A N6AMT2 Nonsense_Mutation p.Q21* 0.85 TCGA-77-7139-01 13 29599438 29599438 C T MTUS2 Silent p.D211D 0.84 TCGA-77-7139-01 13 32783740 32783740 G T FRY Missense_Mutation p.G1432W 0.64 tolerated(0.39) benign(0.034) TCGA-77-7139-01 13 32783741 32783741 G T FRY Missense_Mutation p.G1432V 0.64 tolerated(0.51) possibly_damaging(0.544) TCGA-77-7139-01 13 46287896 46287896 A G SPERT Missense_Mutation p.T246A 0.62 tolerated(0.96) benign(0.019) TCGA-77-7139-01 13 92408647 92408647 G A GPC5 Missense_Mutation p.C418Y 0.71 deleterious(0) probably_damaging(1) TCGA-77-7139-01 14 23315059 23315070 GGAGACGGAGGT - MMP14 In_Frame_Del p.E521_V524del 0.42 TCGA-77-7139-01 14 76965234 76965234 G C ESRRB Intron 0.55 TCGA-77-7139-01 14 77245517 77245517 G A VASH1 3'UTR 0.44 TCGA-77-7139-01 14 86089229 86089229 G T FLRT2 Missense_Mutation p.M457I 0.69 deleterious(0.03) benign(0.439) TCGA-77-7139-01 14 91700878 91700878 A G GPR68 Missense_Mutation p.F173L 0.81 deleterious(0) possibly_damaging(0.547) TCGA-77-7139-01 14 96136854 96136854 C A TCL6 RNA 0.76 TCGA-77-7139-01 15 33192272 33192272 C A FMN1 Nonsense_Mutation p.G965* 0.15 TCGA-77-7139-01 15 39544428 39544428 C T C15orf54 Missense_Mutation p.P31L 0.17 tolerated_low_confidence(0.59) benign(0.004) TCGA-77-7139-01 15 50555518 50555518 G A HDC Nonsense_Mutation p.R40* 0.60 TCGA-77-7139-01 15 83776421 83776421 G T TM6SF1 5'UTR 0.41 TCGA-77-7139-01 15 89079551 89079551 T A DET1 Silent p.I5I 0.33 TCGA-77-7139-01 16 16263509 16263509 G T ABCC6 Missense_Mutation p.L997I 0.29 tolerated(0.35) benign(0.159) TCGA-77-7139-01 16 24788277 24788277 G T TNRC6A Missense_Mutation p.V63L 0.19 tolerated(0.31) possibly_damaging(0.785) TCGA-77-7139-01 16 27514237 27514237 C A GTF3C1 Missense_Mutation p.R617L 0.15 deleterious(0) probably_damaging(0.999) TCGA-77-7139-01 16 31408702 31408702 G A ITGAD Missense_Mutation p.E54K 0.25 tolerated(0.06) benign(0.298) TCGA-77-7139-01 17 33288932 33288932 C - ZNF830 Frame_Shift_Del p.A116Gfs*23 0.28 TCGA-77-7139-01 17 33316655 33316655 G T LIG3 Missense_Mutation p.D288Y 0.48 deleterious(0.01) possibly_damaging(0.608) TCGA-77-7139-01 17 38904449 38904449 A G KRT25 3'UTR 0.47 TCGA-77-7139-01 17 39140293 39140293 G A KRT40 Missense_Mutation p.A78V 0.42 tolerated(0.12) benign(0.003) TCGA-77-7139-01 17 41934484 41934484 C A CD300LG Missense_Mutation p.T282K 0.23 tolerated(0.11) benign(0.007) TCGA-77-7139-01 17 44626575 44626575 G T LRRC37A2 Missense_Mutation p.G1357V 0.20 tolerated(0.13) probably_damaging(0.997) TCGA-77-7139-01 17 46703362 46703362 G C HOXB9 Silent p.A90A 0.27 TCGA-77-7139-01 17 48551073 48551073 G T ACSF2 Missense_Mutation p.R508L 0.40 deleterious(0) probably_damaging(1) TCGA-77-7139-01 17 51900690 51900690 C T KIF2B Missense_Mutation p.A99V 0.37 tolerated(0.25) benign(0.024) TCGA-77-7139-01 17 54451975 54451975 G A ANKFN1 Missense_Mutation p.M273I 0.43 tolerated(0.45) benign(0) TCGA-77-7139-01 17 56700347 56700347 A G TEX14 Missense_Mutation p.V93A 0.05 deleterious(0) probably_damaging(0.955) TCGA-77-7139-01 17 73389819 73389819 C T GRB2 5'UTR 0.11 TCGA-77-7139-01 17 7579575 7579575 G A TP53 Nonsense_Mutation p.Q38* 0.78 TCGA-77-7139-01 17 79165038 79165038 T A AZI1 Missense_Mutation p.D907V 0.27 deleterious(0) probably_damaging(0.964) TCGA-77-7139-01 18 2946456 2946456 G A LPIN2 Intron 0.50 TCGA-77-7139-01 18 49867131 49867131 C A DCC 5'UTR 0.69 TCGA-77-7139-01 19 10502379 10502379 C T CDC37 Missense_Mutation p.A329T 0.38 deleterious(0) probably_damaging(0.991) TCGA-77-7139-01 19 11141524 11141524 G - SMARCA4 Frame_Shift_Del p.A1168Qfs*4 0.23 TCGA-77-7139-01 19 18499663 18499663 T C GDF15 Missense_Mutation p.M282T 0.41 deleterious(0.01) benign(0.161) TCGA-77-7139-01 19 19905509 19905509 G T ZNF506 Missense_Mutation p.P396Q 0.31 deleterious(0) probably_damaging(0.986) TCGA-77-7139-01 19 22939930 22939930 G T ZNF99 3'Flank 0.45 TCGA-77-7139-01 19 35832646 35832646 C G CD22 Missense_Mutation p.Q605E 0.38 tolerated(0.68) benign(0.01) TCGA-77-7139-01 19 36024384 36024384 G C GAPDHS 5'UTR 0.53 TCGA-77-7139-01 19 43866279 43866279 C A CD177 3'UTR 0.47 TCGA-77-7139-01 19 43866280 43866280 C A CD177 3'UTR 0.47 TCGA-77-7139-01 19 44844643 44844643 C T ZNF112 Missense_Mutation p.G23R 0.51 tolerated(0.08) possibly_damaging(0.482) TCGA-77-7139-01 19 4504585 4504585 G T PLIN4 Silent p.R1320R 0.35 TCGA-77-7139-01 19 46357455 46357455 G A SYMPK Missense_Mutation p.S50L 0.21 tolerated(0.13) benign(0.047) TCGA-77-7139-01 19 48733882 48733882 C A CARD8 Missense_Mutation p.R283L 0.43 deleterious(0) probably_damaging(0.992) TCGA-77-7139-01 19 53058830 53058830 G C ZNF808 Silent p.R887R 0.21 TCGA-77-7139-01 19 53209209 53209209 C A ZNF611 Nonsense_Mutation p.E367* 0.29 TCGA-77-7139-01 19 54387496 54387496 A G PRKCG Missense_Mutation p.D95G 0.52 deleterious(0.03) benign(0.24) TCGA-77-7139-01 19 56466867 56466867 G T NLRP8 Missense_Mutation p.Q481H 0.27 deleterious(0.01) benign(0.266) TCGA-77-7139-01 19 56538898 56538898 C T NLRP5 Silent p.S433S 0.21 TCGA-77-7139-01 19 57641513 57641513 G A USP29 Silent p.K490K 0.62 TCGA-77-7139-01 19 57647222 57647222 T A ZIM3 Missense_Mutation p.K161N 0.54 tolerated(0.34) benign(0.108) TCGA-77-7139-01 19 58371298 58371298 G T ZNF587 Silent p.A506A 0.12 TCGA-77-7139-01 19 58420128 58420128 C A ZNF417 Silent p.A506A 0.26 TCGA-77-7139-01 19 9075967 9075967 G T MUC16 Missense_Mutation p.Q3827K 0.35 unknown(0) TCGA-77-7139-01 1 104160600 104160600 G C AMY2A Missense_Mutation p.A65P 0.75 deleterious(0) benign(0.36) TCGA-77-7139-01 1 110884720 110884720 A T RBM15 Missense_Mutation p.K898M 0.71 deleterious(0) probably_damaging(1) TCGA-77-7139-01 1 111825678 111825678 G T CHIAP2 RNA 0.67 TCGA-77-7139-01 1 153617544 153617544 G A CHTOP Silent p.R182R 0.31 TCGA-77-7139-01 1 156928622 156928622 C A ARHGEF11 Missense_Mutation p.G472C 0.42 deleterious(0.02) probably_damaging(1) TCGA-77-7139-01 1 158449964 158449964 C A OR10R2 Silent p.P99P 0.35 TCGA-77-7139-01 1 177250239 177250239 C T BRINP2 Missense_Mutation p.H643Y 0.06 deleterious(0) probably_damaging(0.986) TCGA-77-7139-01 1 186158885 186158885 C A HMCN1 Silent p.R5595R 0.40 TCGA-77-7139-01 1 212533986 212533986 A G PPP2R5A Silent p.K445K 0.40 TCGA-77-7139-01 1 216251459 216251459 G A USH2A Silent p.N1848N 0.43 TCGA-77-7139-01 1 223178106 223178106 G T DISP1 Missense_Mutation p.A1123S 0.32 deleterious(0.04) probably_damaging(0.956) TCGA-77-7139-01 1 247694983 247694983 C A OR2C3 Silent p.L277L 0.33 TCGA-77-7139-01 1 248023995 248023995 A G TRIM58 Missense_Mutation p.K166R 0.42 tolerated(0.09) benign(0.031) TCGA-77-7139-01 1 248059008 248059008 A T OR2W3 Silent p.V40V 0.42 TCGA-77-7139-01 1 248263692 248263692 A G OR2L13 3'UTR 0.54 TCGA-77-7139-01 1 33745880 33745880 A G ZNF362 Missense_Mutation p.S169G 0.74 tolerated(0.14) benign(0.004) TCGA-77-7139-01 1 36439096 36439096 G A AGO3 Missense_Mutation p.M214I 0.80 tolerated(0.07) possibly_damaging(0.904) TCGA-77-7139-01 20 17475387 17475387 G A BFSP1 Silent p.L444L 0.41 TCGA-77-7139-01 20 30804412 30804412 G T POFUT1 Nonsense_Mutation p.E144* 0.09 TCGA-77-7139-01 20 35738710 35738710 A T MROH8 Missense_Mutation p.Y982N 0.35 deleterious(0) probably_damaging(0.961) TCGA-77-7139-01 20 55803407 55803407 G A BMP7 Silent p.I163I 0.33 TCGA-77-7139-01 20 7864299 7864299 C T HAO1 Missense_Mutation p.V352M 0.06 deleterious(0) probably_damaging(0.913) TCGA-77-7139-01 22 23040774 23040774 G T IGLV2-23 Missense_Mutation p.K74N 0.05 tolerated_low_confidence(0.58) benign(0.003) TCGA-77-7139-01 22 38494435 38494435 C T BAIAP2L2 Missense_Mutation p.D111N 0.15 deleterious(0) probably_damaging(1) TCGA-77-7139-01 2 135743713 135743713 G A MAP3K19 Missense_Mutation p.A910V 0.21 tolerated(0.06) benign(0.024) TCGA-77-7139-01 2 1507794 1507794 T A TPO Missense_Mutation p.F821I 0.48 deleterious(0.01) possibly_damaging(0.847) TCGA-77-7139-01 2 155555565 155555565 T A KCNJ3 Missense_Mutation p.V93E 0.45 deleterious(0) probably_damaging(0.915) TCGA-77-7139-01 2 171509533 171509533 T C MYO3B Missense_Mutation p.S1310P 0.23 tolerated_low_confidence(0.33) benign(0.265) TCGA-77-7139-01 2 175624104 175624104 C T CHRNA1 Splice_Site p.X64_splice 0.52 TCGA-77-7139-01 2 179422484 179422484 G T TTN Silent p.V29199V 0.27 TCGA-77-7139-01 2 179424354 179424354 T C TTN Silent p.S28835S 0.29 TCGA-77-7139-01 2 179614814 179614814 T - TTN Intron 0.19 TCGA-77-7139-01 2 202025535 202025535 C T CFLAR Silent p.L392L 0.32 TCGA-77-7139-01 2 212248489 212248489 G T ERBB4 Missense_Mutation p.Q1260K 0.26 tolerated(0.07) benign(0.345) TCGA-77-7139-01 2 27162922 27162922 C T DPYSL5 Missense_Mutation p.S324L 0.29 deleterious(0) probably_damaging(0.998) TCGA-77-7139-01 2 30381628 30381628 G T YPEL5 Missense_Mutation p.K95N 0.24 deleterious(0) probably_damaging(0.998) TCGA-77-7139-01 2 37475456 37475456 C A NDUFAF7 Missense_Mutation p.S430Y 0.23 tolerated_low_confidence(0.28) possibly_damaging(0.519) TCGA-77-7139-01 2 49190227 49190227 A G FSHR Missense_Mutation p.I578T 0.94 deleterious(0) probably_damaging(0.996) TCGA-77-7139-01 2 56145172 56145172 C T EFEMP1 Missense_Mutation p.D49N 0.10 tolerated(0.18) benign(0.245) TCGA-77-7139-01 2 58386773 58386773 G A VRK2 Missense_Mutation p.R491H 0.53 deleterious_low_confidence(0) benign(0.197) TCGA-77-7139-01 2 79363231 79363231 A G REG1P RNA 0.12 TCGA-77-7139-01 2 79384261 79384261 C A REG3A 3'UTR 0.43 TCGA-77-7139-01 2 90139436 90139436 G C IGKV1D-16 Silent p.L69L 0.84 TCGA-77-7139-01 2 91843468 91843468 C T AC027612.6 RNA 0.22 TCGA-77-7139-01 2 96957570 96957570 T C SNRNP200 Silent p.L743L 0.39 TCGA-77-7139-01 3 109046867 109046867 T G DPPA4 Missense_Mutation p.K295Q 0.28 deleterious(0.03) possibly_damaging(0.528) TCGA-77-7139-01 3 122667465 122667465 G T SEMA5B Silent p.P126P 0.23 TCGA-77-7139-01 3 124385927 124385927 G T KALRN Missense_Mutation p.E291D 0.16 tolerated(0.55) benign(0.006) TCGA-77-7139-01 3 148601524 148601524 C A CPA3 Silent p.I301I 0.24 TCGA-77-7139-01 3 178937799 178937799 G A PIK3CA Silent p.L658L 0.35 TCGA-77-7139-01 3 184675193 184675193 C T VPS8 Nonsense_Mutation p.Q1023* 0.36 TCGA-77-7139-01 3 38751047 38751047 G T SCN10A Missense_Mutation p.F1401L 0.78 deleterious(0) probably_damaging(1) TCGA-77-7139-01 3 42916651 42916651 G T CYP8B1 Missense_Mutation p.L220M 0.65 tolerated(0.35) probably_damaging(0.967) TCGA-77-7139-01 3 49159389 49159389 C A LAMB2 Missense_Mutation p.Q1637H 0.70 tolerated(0.08) benign(0.001) TCGA-77-7139-01 3 5024767 5024767 A C BHLHE40 Missense_Mutation p.K210T 0.68 tolerated(0.12) benign(0.057) TCGA-77-7139-01 3 93646252 93646252 C T PROS1 Splice_Site p.X26_splice 0.23 TCGA-77-7139-01 3 98241781 98241781 C A CLDND1 5'UTR 0.41 TCGA-77-7139-01 4 115891698 115891698 G A NDST4 Missense_Mutation p.S370F 0.53 tolerated(0.64) probably_damaging(0.943) TCGA-77-7139-01 4 115997982 115997982 T C NDST4 Missense_Mutation p.I71V 0.64 tolerated(0.63) benign(0.026) TCGA-77-7139-01 4 139966239 139966239 G A CCRN4L Missense_Mutation p.D303N 0.78 tolerated(0.11) benign(0.223) TCGA-77-7139-01 4 156863537 156863537 C T CTSO Missense_Mutation p.V106M 0.74 tolerated(0.3) benign(0.011) TCGA-77-7139-01 4 177071628 177071628 G A WDR17 Missense_Mutation p.G754S 0.44 deleterious(0.02) probably_damaging(0.999) TCGA-77-7139-01 5 1244758 1244758 G C SLC6A18 Missense_Mutation p.R511P 0.14 tolerated(0.07) probably_damaging(0.962) TCGA-77-7139-01 5 127520168 127520168 A T SLC12A2 Missense_Mutation p.N1137I 0.58 deleterious(0.04) probably_damaging(0.982) TCGA-77-7139-01 5 140594850 140594850 C T PCDHB13 Silent p.S385S 0.72 TCGA-77-7139-01 5 14387716 14387716 G A TRIO Missense_Mutation p.G1247E 0.34 probably_damaging(0.999) TCGA-77-7139-01 5 149227066 149227066 A T PPARGC1B Missense_Mutation p.Y1006F 0.78 deleterious(0.02) possibly_damaging(0.533) TCGA-77-7139-01 5 156746871 156746871 C T CYFIP2 Silent p.F460F 0.73 TCGA-77-7139-01 5 156932779 156932779 A G ADAM19 Missense_Mutation p.M343T 0.72 deleterious(0.01) benign(0.287) TCGA-77-7139-01 5 24488146 24488146 C A CDH10 Nonsense_Mutation p.E665* 0.40 TCGA-77-7139-01 5 31483663 31483663 G A DROSHA Missense_Mutation p.P690L 0.08 deleterious(0.04) benign(0.168) TCGA-77-7139-01 5 35876488 35876488 C T IL7R Missense_Mutation p.T427I 0.11 tolerated(0.22) benign(0.037) TCGA-77-7139-01 5 38337716 38337716 C A EGFLAM Silent p.P64P 0.19 TCGA-77-7139-01 5 38337717 38337717 A T EGFLAM Missense_Mutation p.I65F 0.19 deleterious_low_confidence(0) probably_damaging(0.918) TCGA-77-7139-01 5 5182278 5182278 C A ADAMTS16 Missense_Mutation p.S208Y 0.19 deleterious(0) possibly_damaging(0.832) TCGA-77-7139-01 5 77316598 77316598 G A AP3B1 Silent p.C970C 0.84 TCGA-77-7139-01 5 77316599 77316599 C A AP3B1 Missense_Mutation p.C970F 0.84 tolerated(0.7) benign(0.308) TCGA-77-7139-01 6 109871349 109871349 T C AK9 Missense_Mutation p.K970E 0.22 deleterious(0) possibly_damaging(0.771) TCGA-77-7139-01 6 117647501 117647501 A C ROS1 Missense_Mutation p.C1815G 0.34 deleterious(0) possibly_damaging(0.891) TCGA-77-7139-01 6 122744076 122744076 G A HSF2 Silent p.L348L 0.45 TCGA-77-7139-01 6 127898329 127898329 C A C6orf58 5'UTR 0.57 TCGA-77-7139-01 6 130762582 130762582 C A TMEM200A Missense_Mutation p.Q339K 0.54 tolerated(1) benign(0.001) TCGA-77-7139-01 6 132966729 132966729 C T TAAR1 Silent p.L138L 0.30 TCGA-77-7139-01 6 144178565 144178565 G A LTV1 Missense_Mutation p.E175K 0.22 tolerated(0.22) benign(0.006) TCGA-77-7139-01 6 150001593 150001593 C T LATS1 Missense_Mutation p.V671I 0.52 tolerated(0.09) possibly_damaging(0.474) TCGA-77-7139-01 6 152539487 152539487 C A SYNE1 Missense_Mutation p.A7366S 0.04 benign(0.043) TCGA-77-7139-01 6 158922910 158922910 G A TULP4 Missense_Mutation p.D739N 0.33 deleterious_low_confidence(0.02) benign(0.127) TCGA-77-7139-01 6 170594381 170594381 C T DLL1 Silent p.E331E 0.33 TCGA-77-7139-01 6 170594382 170594382 T C DLL1 Missense_Mutation p.E331G 0.31 deleterious(0) benign(0.347) TCGA-77-7139-01 6 35782386 35782386 G A LHFPL5 Missense_Mutation p.R159H 0.28 deleterious(0.03) probably_damaging(1) TCGA-77-7139-01 6 47846403 47846403 A G PTCHD4 Missense_Mutation p.I726T 0.16 deleterious(0.02) benign(0.179) TCGA-77-7139-01 6 556483 556483 C A EXOC2 Splice_Site p.X644_splice 0.40 TCGA-77-7139-01 6 73843329 73843329 G A KCNQ5 Missense_Mutation p.R497H 0.50 deleterious(0) probably_damaging(0.987) TCGA-77-7139-01 6 87967668 87967668 A G ZNF292 Missense_Mutation p.T1441A 0.27 tolerated(0.69) benign(0.001) TCGA-77-7139-01 6 90455244 90455244 G C MDN1 Missense_Mutation p.L1336V 0.26 probably_damaging(0.984) TCGA-77-7139-01 7 100485702 100485702 A G SRRT Missense_Mutation p.H789R 0.20 tolerated(0.57) possibly_damaging(0.53) TCGA-77-7139-01 7 101459292 101459292 C G CUX1 5'UTR 0.57 TCGA-77-7139-01 7 113518465 113518465 C G PPP1R3A Silent p.S894S 0.47 TCGA-77-7139-01 7 11582701 11582701 A T THSD7A Silent p.P499P 0.19 TCGA-77-7139-01 7 121731817 121731817 C A AASS Missense_Mutation p.W652C 0.33 deleterious(0) probably_damaging(1) TCGA-77-7139-01 7 12269405 12269405 T A TMEM106B Nonsense_Mutation p.L181* 0.41 TCGA-77-7139-01 7 128481548 128481548 T A FLNC Missense_Mutation p.I683N 0.13 tolerated(0.08) possibly_damaging(0.776) TCGA-77-7139-01 7 128481549 128481549 C T FLNC Silent p.I683I 0.12 TCGA-77-7139-01 7 128481550 128481550 G C FLNC Missense_Mutation p.V684L 0.12 deleterious(0.05) possibly_damaging(0.515) TCGA-77-7139-01 7 27147909 27147909 G T HOXA3 Nonsense_Mutation p.C319* 0.30 TCGA-77-7139-01 7 31792888 31792888 C A PDE1C 3'UTR 0.62 TCGA-77-7139-01 7 31792889 31792889 C A PDE1C 3'UTR 0.61 TCGA-77-7139-01 7 48314665 48314665 C T ABCA13 Missense_Mutation p.T1801I 0.23 benign(0.001) TCGA-77-7139-01 7 6442089 6442089 C T RAC1 3'UTR 0.29 TCGA-77-7139-01 7 94292996 94292996 C T PEG10 Missense_Mutation p.T43I 0.41 tolerated_low_confidence(0.22) benign(0.024) TCGA-77-7139-01 8 110516597 110516597 A T PKHD1L1 Missense_Mutation p.T3624S 0.55 tolerated(0.41) benign(0.297) TCGA-77-7139-01 8 113326766 113326766 G A CSMD3 Missense_Mutation p.L2481F 0.10 tolerated(1) probably_damaging(0.997) TCGA-77-7139-01 8 113563067 113563067 T C CSMD3 Missense_Mutation p.H1466R 0.53 deleterious(0) probably_damaging(0.978) TCGA-77-7139-01 8 120598474 120598474 C T ENPP2 Missense_Mutation p.R492K 0.27 deleterious(0) probably_damaging(0.973) TCGA-77-7139-01 8 121382699 121382699 G T COL14A1 Intron 0.28 TCGA-77-7139-01 8 128750953 128750953 C G MYC Missense_Mutation p.L164V 0.13 deleterious(0.05) possibly_damaging(0.73) TCGA-77-7139-01 8 13965676 13965676 G C SGCZ Missense_Mutation p.L206V 0.56 deleterious(0) probably_damaging(0.997) TCGA-77-7139-01 8 39624378 39624378 G A ADAM2 Missense_Mutation p.T499I 0.50 tolerated(1) benign(0.003) TCGA-77-7139-01 8 70517049 70517049 G A SULF1 Missense_Mutation p.R420H 0.62 tolerated(0.93) benign(0.016) TCGA-77-7139-01 8 87155182 87155182 A T ATP6V0D2 Missense_Mutation p.E213V 0.10 tolerated(0.15) possibly_damaging(0.716) TCGA-77-7139-01 9 111812568 111812568 A G TMEM245 Silent p.A706A 0.45 TCGA-77-7139-01 9 120475846 120475846 C T TLR4 Silent p.G480G 0.46 TCGA-77-7139-01 9 121930240 121930240 G T BRINP1 Silent p.R470R 0.23 TCGA-77-7139-01 9 133951225 133951225 G A LAMC3 Missense_Mutation p.D1168N 0.54 deleterious(0.04) benign(0.053) TCGA-77-7139-01 9 139397646 139397646 C A NOTCH1 Nonsense_Mutation p.E1719* 0.51 TCGA-77-7139-01 9 139407561 139407561 G A NOTCH1 Silent p.N793N 0.26 TCGA-77-7139-01 9 140437948 140437948 T G PNPLA7 Missense_Mutation p.T148P 0.46 deleterious(0.02) probably_damaging(0.915) TCGA-77-7139-01 9 37740513 37740513 A G FRMPD1 Missense_Mutation p.Q663R 0.41 tolerated(0.17) benign(0.007) TCGA-77-7139-01 9 4118635 4118635 A G GLIS3 Silent p.S281S 0.80 TCGA-77-7139-01 9 43095118 43095118 C - ANKRD20A3 Frame_Shift_Del p.E435Kfs*8 0.24 TCGA-77-7139-01 9 84608953 84608953 T C SPATA31D1 Missense_Mutation p.S1190P 0.12 tolerated(0.31) benign(0.002) TCGA-77-7139-01 X 134166352 134166352 C T FAM127A 5'UTR 0.70 TCGA-77-7139-01 X 135474481 135474481 G A GPR112 Missense_Mutation p.V2668I 0.87 tolerated(0.25) benign(0.005) TCGA-77-7139-01 X 141291352 141291352 A G MAGEC2 Missense_Mutation p.L141P 0.82 deleterious(0) probably_damaging(0.987) TCGA-77-7139-01 X 44911038 44911038 C T KDM6A Nonsense_Mutation p.Q247* 0.35 TCGA-77-7139-01 X 53610752 53610752 G A HUWE1 Silent p.C1762C 0.75 TCGA-77-7140-01 10 128147734 128147734 A C C10orf90 Missense_Mutation p.L591R 0.28 deleterious(0) probably_damaging(0.998) TCGA-77-7140-01 10 128192873 128192873 T A C10orf90 Missense_Mutation p.H299L 0.26 tolerated(0.07) possibly_damaging(0.796) TCGA-77-7140-01 10 134219055 134219055 G A PWWP2B Missense_Mutation p.A351T 0.33 tolerated(0.28) probably_damaging(0.957) TCGA-77-7140-01 10 16994367 16994367 G T CUBN Missense_Mutation p.T1626N 0.45 deleterious(0.01) possibly_damaging(0.906) TCGA-77-7140-01 10 22095008 22095008 C G DNAJC1 Missense_Mutation p.E333D 0.79 tolerated(0.38) benign(0.179) TCGA-77-7140-01 10 58119507 58119507 C T ZWINT Missense_Mutation p.E122K 0.62 tolerated(0.1) benign(0.201) TCGA-77-7140-01 10 75035334 75035346 TGTGCAAGCACTC - TTC18 Frame_Shift_Del p.R914Mfs*44 0.16 TCGA-77-7140-01 10 7771992 7771992 A T ITIH2 Missense_Mutation p.M453L 0.28 tolerated(0.07) benign(0.003) TCGA-77-7140-01 10 97916115 97916115 A G ZNF518A RNA 0.58 TCGA-77-7140-01 11 104878033 104878033 C A CASP5 Missense_Mutation p.K83N 0.28 tolerated(0.11) benign(0.412) TCGA-77-7140-01 11 108213952 108213952 G C ATM Missense_Mutation p.V2758L 0.23 deleterious(0.04) possibly_damaging(0.795) TCGA-77-7140-01 11 111431185 111431185 A G LAYN 3'UTR 0.21 TCGA-77-7140-01 11 117079718 117079718 G C PCSK7 Missense_Mutation p.A529G 0.16 deleterious(0) possibly_damaging(0.883) TCGA-77-7140-01 11 117266407 117266407 G T CEP164 Missense_Mutation p.A1020S 0.16 tolerated(0.24) possibly_damaging(0.544) TCGA-77-7140-01 11 117785147 117785147 C G TMPRSS13 Silent p.G213G 0.17 TCGA-77-7140-01 11 20622934 20622934 A C SLC6A5 Missense_Mutation p.Q88P 0.30 tolerated_low_confidence(0.45) benign(0) TCGA-77-7140-01 11 35547079 35547079 T G PAMR1 Missense_Mutation p.I19L 0.33 tolerated_low_confidence(0.18) probably_damaging(0.976) TCGA-77-7140-01 11 43356826 43356826 A G API5 Splice_Site p.X427_splice 0.21 TCGA-77-7140-01 11 55702985 55702985 C G OR5I1 Missense_Mutation p.D298H 0.83 deleterious(0) possibly_damaging(0.573) TCGA-77-7140-01 11 57982604 57982604 A - OR1S1 Frame_Shift_Del p.T130Pfs*14 0.39 TCGA-77-7140-01 11 58477425 58477425 C T GLYAT Silent p.P235P 0.82 TCGA-77-7140-01 11 63767122 63767122 G C MACROD1 Missense_Mutation p.R260G 0.10 deleterious(0) probably_damaging(0.997) TCGA-77-7140-01 11 67021070 67021070 G C KDM2A Missense_Mutation p.A1027P 0.80 tolerated(0.11) benign(0.064) TCGA-77-7140-01 12 111072585 111072585 G A TCTN1 Splice_Site p.X274_splice 0.80 TCGA-77-7140-01 12 118599760 118599769 CTCGGGTGGA - TAOK3 Frame_Shift_Del p.T656* 0.86 TCGA-77-7140-01 12 122107350 122107350 A G MORN3 Missense_Mutation p.W14R 0.33 deleterious(0.01) possibly_damaging(0.894) TCGA-77-7140-01 12 124377963 124377963 C A DNAH10 Missense_Mutation p.T2942N 0.26 benign(0.168) TCGA-77-7140-01 12 133682593 133682593 C A ZNF140 Missense_Mutation p.P244T 0.22 deleterious(0) probably_damaging(0.999) TCGA-77-7140-01 12 49420181 49420181 G A KMT2D Nonsense_Mutation p.Q5190* 0.22 TCGA-77-7140-01 12 52680955 52680955 A C KRT81 Missense_Mutation p.M393R 0.56 deleterious(0.01) probably_damaging(0.925) TCGA-77-7140-01 12 52681798 52681798 C T KRT81 Silent p.R290R 0.17 TCGA-77-7140-01 12 52699122 52699122 C G KRT86 Missense_Mutation p.I278M 0.34 deleterious(0) probably_damaging(0.925) TCGA-77-7140-01 12 54757228 54757228 C T GPR84 Silent p.G136G 0.26 TCGA-77-7140-01 12 56630251 56630251 C T SLC39A5 Silent p.A339A 0.22 TCGA-77-7140-01 12 6120844 6120844 G A VWF Silent p.C1927C 0.17 TCGA-77-7140-01 12 6711583 6711583 G A CHD4 Missense_Mutation p.R61W 0.67 deleterious_low_confidence(0) benign(0.125) TCGA-77-7140-01 12 69158481 69158481 C G SLC35E3 Intron 0.84 TCGA-77-7140-01 12 6952365 6952365 G A GNB3 Silent p.G77G 0.14 TCGA-77-7140-01 12 78593208 78593208 C G NAV3 Missense_Mutation p.N2182K 0.29 tolerated(0.08) benign(0.419) TCGA-77-7140-01 12 86199005 86199005 G T RASSF9 Missense_Mutation p.S261R 0.29 tolerated(0.39) benign(0.001) TCGA-77-7140-01 13 26621158 26621158 G T SHISA2 Silent p.A127A 0.08 TCGA-77-7140-01 13 28979915 28979915 A G FLT1 Splice_Site p.X517_splice 0.81 TCGA-77-7140-01 13 29599861 29599861 C A MTUS2 Silent p.A352A 0.30 TCGA-77-7140-01 13 49918327 49918327 T C CAB39L Silent p.Q204Q 0.62 TCGA-77-7140-01 14 21790032 21790032 T C RPGRIP1 Missense_Mutation p.M544T 0.42 tolerated(0.23) benign(0.005) TCGA-77-7140-01 14 23900873 23900873 T G MYH7 Missense_Mutation p.D218A 0.28 deleterious(0) probably_damaging(0.999) TCGA-77-7140-01 14 24879361 24879361 T C NYNRIN Silent p.P787P 0.47 TCGA-77-7140-01 14 24911888 24911888 C A SDR39U1 Intron 0.43 TCGA-77-7140-01 14 62205009 62205026 TGGAACTTTCTTTTACCA - HIF1A In_Frame_Del p.E510_M515del 0.28 TCGA-77-7140-01 15 101845486 101845486 G C PCSK6 Missense_Mutation p.R962G 0.15 deleterious_low_confidence(0.02) possibly_damaging(0.628) TCGA-77-7140-01 15 26026319 26026319 G T ATP10A Missense_Mutation p.D167E 0.28 deleterious(0.01) probably_damaging(0.971) TCGA-77-7140-01 15 40589081 40589081 G A PLCB2 Missense_Mutation p.P451L 0.21 deleterious(0.02) probably_damaging(1) TCGA-77-7140-01 15 72180374 72180374 C T MYO9A Silent p.V1742V 0.39 TCGA-77-7140-01 15 87097678 87097678 G A AGBL1 Silent p.T922T 0.83 TCGA-77-7140-01 15 91496957 91496957 C T UNC45A 3'UTR 0.21 TCGA-77-7140-01 16 2012390 2012390 A G RPS2 Intron 0.24 TCGA-77-7140-01 16 22276183 22276183 C T EEF2K Silent p.S474S 0.76 TCGA-77-7140-01 16 24834781 24834781 G T TNRC6A Missense_Mutation p.A1848S 0.38 deleterious(0) probably_damaging(0.999) TCGA-77-7140-01 16 27497407 27497407 G A GTF3C1 Missense_Mutation p.R1257W 0.30 deleterious(0) probably_damaging(0.912) TCGA-77-7140-01 16 69354160 69354160 G A VPS4A Missense_Mutation p.R246K 0.76 deleterious(0) probably_damaging(0.943) TCGA-77-7140-01 16 76486584 76486584 G T CNTNAP4 Silent p.G344G 0.45 TCGA-77-7140-01 16 76555943 76555943 A C CNTNAP4 Silent p.T775T 0.77 TCGA-77-7140-01 17 10265777 10265777 G C MYH13 Missense_Mutation p.P83R 0.41 deleterious(0) probably_damaging(0.999) TCGA-77-7140-01 17 10404934 10404934 G T MYH1 Missense_Mutation p.Q1109K 0.80 deleterious(0.01) probably_damaging(0.998) TCGA-77-7140-01 17 18863860 18863860 G C SLC5A10 Splice_Site p.X117_splice 0.74 TCGA-77-7140-01 17 27047788 27047810 AAGGTGTCCACAGCCACAAAAAG - RPL23A Frame_Shift_Del p.G31Efs*34 0.14 TCGA-77-7140-01 17 33690649 33690649 C G SLFN11 Missense_Mutation p.V60L 0.52 deleterious(0.04) benign(0.276) TCGA-77-7140-01 17 33807147 33807147 T A SLFN12L Missense_Mutation p.N28Y 0.18 deleterious(0.01) possibly_damaging(0.6) TCGA-77-7140-01 17 3417963 3417963 G C TRPV3 Missense_Mutation p.I734M 0.39 deleterious(0) probably_damaging(0.999) TCGA-77-7140-01 17 40870048 40870048 A G EZH1 Silent p.N323N 0.47 TCGA-77-7140-01 17 41150664 41150664 C G RPL27 5'UTR 0.76 TCGA-77-7140-01 17 4855131 4855131 A T ENO3 Missense_Mutation p.M3L 0.18 deleterious_low_confidence(0.02) benign(0.011) TCGA-77-7140-01 17 58267999 58267999 G T USP32 Missense_Mutation p.F1189L 0.22 tolerated(0.65) benign(0.042) TCGA-77-7140-01 17 62892739 62892739 C G LRRC37A3 Missense_Mutation p.V213L 0.36 tolerated(0.31) benign(0.002) TCGA-77-7140-01 17 73647100 73647100 G A RECQL5 Intron 0.20 TCGA-77-7140-01 17 7577105 7577105 G C TP53 Missense_Mutation p.P278R 0.84 deleterious(0) probably_damaging(1) TCGA-77-7140-01 17 76117159 76117159 G A TMC6 Silent p.C490C 0.06 TCGA-77-7140-01 17 7612526 7612526 C A EFNB3 Missense_Mutation p.P219T 0.11 tolerated(0.38) possibly_damaging(0.761) TCGA-77-7140-01 17 77923530 77923530 C A TBC1D16 Missense_Mutation p.E464D 0.20 tolerated(0.22) benign(0.008) TCGA-77-7140-01 17 79988654 79988654 C T LRRC45 Silent p.P662P 0.84 TCGA-77-7140-01 18 43702509 43702509 C G HAUS1 Missense_Mutation p.L185V 0.86 tolerated(0.21) possibly_damaging(0.803) TCGA-77-7140-01 18 67860560 67860560 C A RTTN Missense_Mutation p.R324I 0.85 deleterious(0) probably_damaging(1) TCGA-77-7140-01 19 10227621 10227621 C G EIF3G Missense_Mutation p.K150N 0.08 deleterious(0.01) probably_damaging(0.911) TCGA-77-7140-01 19 10260275 10260275 A G DNMT1 Missense_Mutation p.C814R 0.43 tolerated(0.14) benign(0.082) TCGA-77-7140-01 19 15234038 15234038 C T ILVBL Silent p.A118A 0.30 TCGA-77-7140-01 19 20806973 20806973 C A ZNF626 3'UTR 0.57 TCGA-77-7140-01 19 32923712 32923712 G C DPY19L3 Missense_Mutation p.G110R 0.36 deleterious(0) probably_damaging(0.995) TCGA-77-7140-01 19 38573161 38573161 G C SIPA1L3 Missense_Mutation p.G319A 0.46 tolerated(0.37) benign(0) TCGA-77-7140-01 19 40553342 40553342 G C ZNF780B Missense_Mutation p.L58V 0.46 deleterious(0.01) benign(0.364) TCGA-77-7140-01 19 46832675 46832675 G A HIF3A Missense_Mutation p.C551Y 0.84 tolerated_low_confidence(0.08) benign(0.192) TCGA-77-7140-01 19 51133412 51133412 G - SYT3 Frame_Shift_Del p.R231Dfs*8 0.54 TCGA-77-7140-01 19 5214674 5214674 C T PTPRS Silent p.T1464T 0.55 TCGA-77-7140-01 19 54758688 54758694 GGGCTGA - LILRB5 Frame_Shift_Del p.S387Rfs*73 0.17 TCGA-77-7140-01 1 100174816 100174816 C A FRRS1 Splice_Site p.X533_splice 0.56 TCGA-77-7140-01 1 115829096 115829096 G A NGF Silent p.V107V 0.39 TCGA-77-7140-01 1 149785186 149785186 C T HIST2H3D Silent p.P17P 0.55 TCGA-77-7140-01 1 152382317 152382317 C A CRNN Missense_Mutation p.R414M 0.32 deleterious(0.02) benign(0.237) TCGA-77-7140-01 1 156231127 156231127 A C SMG5 Missense_Mutation p.S702A 0.22 tolerated(0.73) benign(0.003) TCGA-77-7140-01 1 160607060 160607060 C A SLAMF1 Missense_Mutation p.K112N 0.20 tolerated(0.06) benign(0.152) TCGA-77-7140-01 1 17318293 17318293 C A ATP13A2 Missense_Mutation p.K729N 0.11 deleterious(0) probably_damaging(1) TCGA-77-7140-01 1 181767896 181767896 G C CACNA1E Missense_Mutation p.G2290R 0.58 tolerated(0.06) probably_damaging(0.969) TCGA-77-7140-01 1 182811713 182811713 T G DHX9 Silent p.V4V 0.27 TCGA-77-7140-01 1 184863288 184863288 G C FAM129A Missense_Mutation p.S80C 0.30 deleterious(0.04) possibly_damaging(0.605) TCGA-77-7140-01 1 186289504 186289504 C T TPR Missense_Mutation p.E2170K 0.22 possibly_damaging(0.777) TCGA-77-7140-01 1 196876109 196876109 C - CFHR4 Frame_Shift_Del p.N185Kfs*6 0.21 TCGA-77-7140-01 1 203029546 203029546 G C PPFIA4 Splice_Site p.X422_splice 0.09 TCGA-77-7140-01 1 204419067 204419067 G A PIK3C2B Silent p.P715P 0.26 TCGA-77-7140-01 1 2116401 2116401 T A PRKCZ Missense_Mutation p.F578I 0.61 deleterious(0) probably_damaging(1) TCGA-77-7140-01 1 215848635 215848635 C A USH2A Missense_Mutation p.Q4206H 0.63 possibly_damaging(0.726) TCGA-77-7140-01 1 220953525 220953525 G A MARC2 Silent p.T276T 0.49 TCGA-77-7140-01 1 232002431 232002431 C A DISC1 3'UTR 0.82 TCGA-77-7140-01 1 25611164 25611164 G A RHD Missense_Mutation p.M83I 0.31 tolerated(1) benign(0.023) TCGA-77-7140-01 1 26497178 26497178 G A ZNF593 Missense_Mutation p.E126K 0.80 tolerated(0.15) benign(0.004) TCGA-77-7140-01 1 29064121 29064121 T G YTHDF2 Intron 0.41 TCGA-77-7140-01 1 32714101 32714101 C A FAM167B Missense_Mutation p.L131M 0.86 tolerated(0.06) benign(0.085) TCGA-77-7140-01 1 40092741 40092741 G A HEYL Missense_Mutation p.A142V 0.78 deleterious(0.04) benign(0.059) TCGA-77-7140-01 1 53680305 53680305 T A C1orf123 3'UTR 0.30 TCGA-77-7140-01 1 55224234 55224234 C T PARS2 Missense_Mutation p.G201S 0.39 tolerated(0.59) benign(0.136) TCGA-77-7140-01 1 84876590 84876590 C A DNASE2B Missense_Mutation p.P152Q 0.15 deleterious(0) probably_damaging(0.998) TCGA-77-7140-01 1 85624895 85624895 T A SYDE2 Missense_Mutation p.L1041F 0.62 tolerated(0.12) benign(0.379) TCGA-77-7140-01 20 22562582 22562582 A G FOXA2 Missense_Mutation p.V433A 0.16 tolerated(0.56) benign(0.138) TCGA-77-7140-01 20 24950867 24950867 G C APMAP Missense_Mutation p.L227V 0.25 tolerated(0.56) benign(0.155) TCGA-77-7140-01 20 25011495 25011495 C T ACSS1 Silent p.L177L 0.05 TCGA-77-7140-01 20 3052374 3052374 T G OXT Missense_Mutation p.C25G 0.17 deleterious(0) probably_damaging(1) TCGA-77-7140-01 20 30676401 30676405 AGGGC - HCK Frame_Shift_Del p.G350Qfs*9 0.32 TCGA-77-7140-01 20 39744069 39744069 A G TOP1 Missense_Mutation p.D566G 0.23 deleterious(0.01) possibly_damaging(0.877) TCGA-77-7140-01 21 16338767 16338767 C T NRIP1 Missense_Mutation p.V583I 0.05 tolerated(0.3) benign(0.012) TCGA-77-7140-01 21 34903812 34903812 C T GART Missense_Mutation p.D194N 0.79 deleterious(0.03) benign(0.024) TCGA-77-7140-01 22 22673513 22673513 C T IGLV5-52 Silent p.I102I 0.40 TCGA-77-7140-01 22 26306916 26306916 C T MYO18B Missense_Mutation p.H1755Y 0.43 deleterious(0) benign(0.138) TCGA-77-7140-01 22 36717865 36717865 C G MYH9 Missense_Mutation p.G236A 0.31 possibly_damaging(0.824) TCGA-77-7140-01 22 36912538 36912538 T G EIF3D Missense_Mutation p.E398A 0.27 deleterious(0) probably_damaging(0.998) TCGA-77-7140-01 22 38328604 38328604 G A MICALL1 Silent p.E687E 0.29 TCGA-77-7140-01 22 46655035 46655035 T A PKDREJ Silent p.A1395A 0.30 TCGA-77-7140-01 2 101607251 101607251 G A NPAS2 Silent p.L676L 0.86 TCGA-77-7140-01 2 128249594 128249594 T A IWS1 Missense_Mutation p.H667L 0.18 deleterious(0) benign(0.079) TCGA-77-7140-01 2 152349906 152349906 C G NEB Missense_Mutation p.E8242D 0.86 benign(0.065) TCGA-77-7140-01 2 157183364 157183364 G C NR4A2 Silent p.L409L 0.19 TCGA-77-7140-01 2 170666844 170666844 G C SSB Missense_Mutation p.D241H 0.13 deleterious(0.01) probably_damaging(0.99) TCGA-77-7140-01 2 179473027 179473035 TTCAAGGCA - TTN In_Frame_Del p.N17525_L17527del 0.09 TCGA-77-7140-01 2 179476283 179476283 C A TTN Missense_Mutation p.M16891I 0.16 TCGA-77-7140-01 2 203591016 203591016 G T FAM117B Missense_Mutation p.S297I 0.46 deleterious(0.02) probably_damaging(0.997) TCGA-77-7140-01 2 212488649 212488649 T A ERBB4 Nonsense_Mutation p.K734* 0.17 TCGA-77-7140-01 2 216240075 216240075 G C FN1 Missense_Mutation p.P2007A 0.42 tolerated(0.05) benign(0.175) TCGA-77-7140-01 2 228175576 228175576 C G COL4A3 Missense_Mutation p.L1614V 0.39 unknown(0) TCGA-77-7140-01 2 236957859 236957859 A G AGAP1 Missense_Mutation p.E683G 0.32 tolerated(0.33) probably_damaging(0.963) TCGA-77-7140-01 2 239038867 239038867 G C ESPNL Missense_Mutation p.E504D 0.57 deleterious(0) probably_damaging(0.999) TCGA-77-7140-01 2 33774762 33774762 A C RASGRP3 Missense_Mutation p.N496H 0.22 deleterious(0) possibly_damaging(0.817) TCGA-77-7140-01 2 37085055 37085055 C A STRN Missense_Mutation p.R594L 0.33 deleterious(0) probably_damaging(0.942) TCGA-77-7140-01 2 39029887 39029887 A T DHX57 Silent p.G1329G 0.62 TCGA-77-7140-01 2 55277347 55277347 C A RTN4 Missense_Mutation p.E30D 0.15 tolerated_low_confidence(0.48) benign(0.217) TCGA-77-7140-01 2 71206958 71206958 C G ANKRD53 Nonsense_Mutation p.Y195* 0.60 TCGA-77-7140-01 2 74146631 74146631 C T ACTG2 Nonsense_Mutation p.Q354* 0.14 TCGA-77-7140-01 2 74699796 74699796 C A MRPL53 5'UTR 0.21 TCGA-77-7140-01 2 85781346 85781346 A G GGCX Missense_Mutation p.L270P 0.21 deleterious(0.03) possibly_damaging(0.766) TCGA-77-7140-01 2 90229106 90229106 G C IGKV1D-42 Silent p.L14L 0.52 TCGA-77-7140-01 2 95841965 95841980 GGAGAGAATGGCTGCT - ZNF2 Missense_Mutation 0.22 TCGA-77-7140-01 3 107798871 107798871 C T CD47 Missense_Mutation p.G123S 0.16 deleterious(0) probably_damaging(1) TCGA-77-7140-01 3 121238786 121238786 C T POLQ Missense_Mutation p.R467Q 0.42 tolerated(0.34) benign(0.015) TCGA-77-7140-01 3 123023017 123023017 G - ADCY5 Frame_Shift_Del p.P819Hfs*14 0.35 TCGA-77-7140-01 3 141499495 141499495 G A GRK7 Missense_Mutation p.A298T 0.40 deleterious(0) probably_damaging(1) TCGA-77-7140-01 3 155267643 155267643 G A PLCH1 Missense_Mutation p.S420F 0.37 deleterious(0.02) probably_damaging(0.948) TCGA-77-7140-01 3 169889230 169889230 C G PHC3 Missense_Mutation p.L115F 0.18 deleterious(0.02) probably_damaging(0.994) TCGA-77-7140-01 3 184102832 184102832 C G CHRD Missense_Mutation p.L542V 0.43 tolerated(0.1) probably_damaging(0.999) TCGA-77-7140-01 3 184801280 184801280 C T C3orf70 Missense_Mutation p.E90K 0.12 deleterious_low_confidence(0.02) probably_damaging(0.953) TCGA-77-7140-01 3 194117395 194117395 G C GP5 Missense_Mutation p.I539M 0.19 deleterious(0) probably_damaging(0.999) TCGA-77-7140-01 3 194126777 194126777 C T ATP13A3 Silent p.K1184K 0.12 TCGA-77-7140-01 3 194947478 194947478 G A XXYLT1 Silent p.I204I 0.36 TCGA-77-7140-01 3 24206817 24206817 T G THRB Intron 0.74 TCGA-77-7140-01 4 144460080 144460080 C A SMARCA5 Missense_Mutation p.L587I 0.63 deleterious(0) possibly_damaging(0.856) TCGA-77-7140-01 4 155507114 155507114 A G FGA Silent p.S489S 0.31 TCGA-77-7140-01 4 164449976 164449976 A G MARCH1 Missense_Mutation p.V265A 0.37 tolerated_low_confidence(1) benign(0) TCGA-77-7140-01 4 16504259 16504259 G A LDB2 3'UTR 0.32 TCGA-77-7140-01 4 169341524 169341524 A T DDX60L Missense_Mutation p.V801D 0.36 deleterious(0) probably_damaging(0.995) TCGA-77-7140-01 4 25005825 25005825 G T LGI2 Missense_Mutation p.L296I 0.60 deleterious(0.02) benign(0.198) TCGA-77-7140-01 4 36166626 36166626 C T ARAP2 Missense_Mutation p.E695K 0.51 tolerated(0.36) benign(0.14) TCGA-77-7140-01 4 72215626 72215626 T A SLC4A4 Intron 0.15 TCGA-77-7140-01 4 74280763 74280763 A C ALB Missense_Mutation p.E357A 0.49 deleterious(0) probably_damaging(0.959) TCGA-77-7140-01 4 85715767 85715767 G A WDFY3 Missense_Mutation p.S1131F 0.41 deleterious(0.02) benign(0.401) TCGA-77-7140-01 5 109065084 109065084 C G MAN2A1 Missense_Mutation p.Q193E 0.67 deleterious(0.01) possibly_damaging(0.578) TCGA-77-7140-01 5 140306780 140306780 C G PCDHAC1 Silent p.L101L 0.44 TCGA-77-7140-01 5 140431025 140431025 C T PCDHB1 5'UTR 0.11 TCGA-77-7140-01 5 140564012 140564012 C T PCDHB16 Silent p.T626T 0.72 TCGA-77-7140-01 5 140802364 140802364 G C PCDHGA11 Missense_Mutation p.E524Q 0.78 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-77-7140-01 5 35700685 35700685 C G SPEF2 Silent p.G743G 0.73 TCGA-77-7140-01 5 79031567 79031567 T G CMYA5 Missense_Mutation p.L2327V 0.05 benign(0.05) TCGA-77-7140-01 6 110300648 110300648 A T GPR6 Silent p.V111V 0.71 TCGA-77-7140-01 6 123101571 123101571 A T FABP7 Missense_Mutation p.E70V 0.75 deleterious(0.01) probably_damaging(0.954) TCGA-77-7140-01 6 146673400 146673400 G A GRM1 Missense_Mutation p.E401K 0.40 tolerated(0.48) benign(0.036) TCGA-77-7140-01 6 147612297 147612297 G C STXBP5 Silent p.T302T 0.24 TCGA-77-7140-01 6 26216645 26216645 C G HIST1H2BG Missense_Mutation p.G76A 0.27 tolerated_low_confidence(0.25) benign(0.347) TCGA-77-7140-01 6 30071160 30071160 C G TRIM31 3'UTR 0.79 TCGA-77-7140-01 6 32032752 32032752 C G TNXB Missense_Mutation p.K2229N 0.74 possibly_damaging(0.72) TCGA-77-7140-01 6 32940587 32940587 A T BRD2 5'UTR 0.82 TCGA-77-7140-01 6 33232226 33232226 G C VPS52 Missense_Mutation p.I483M 0.11 deleterious(0.01) probably_damaging(0.992) TCGA-77-7140-01 6 34847904 34847919 CAAGTAATTCACAGAA - UHRF1BP1 3'Flank 0.44 TCGA-77-7140-01 6 51609285 51609286 - T PKHD1 Frame_Shift_Ins p.Y3352Ifs*22 0.45 TCGA-77-7140-01 6 56475306 56475306 T G DST Missense_Mutation p.E1197D 0.79 benign(0.431) TCGA-77-7140-01 7 100606772 100606772 C T MUC3A Missense_Mutation p.T621I 0.53 tolerated_low_confidence(0.13) probably_damaging(0.928) TCGA-77-7140-01 7 106799923 106799923 C G PRKAR2B Missense_Mutation p.L385V 0.16 deleterious(0) probably_damaging(0.988) TCGA-77-7140-01 7 120906861 120906861 A T CPED1 Missense_Mutation p.R878W 0.48 deleterious(0) probably_damaging(1) TCGA-77-7140-01 7 126173900 126173900 C T GRM8 Silent p.P512P 0.23 TCGA-77-7140-01 7 127847962 127847962 C A MIR129-1 RNA 0.42 TCGA-77-7140-01 7 141672578 141672578 C G TAS2R38 Missense_Mutation p.L304F 0.32 tolerated(0.07) probably_damaging(1) TCGA-77-7140-01 7 30963583 30963583 C T AQP1 3'UTR 0.19 TCGA-77-7140-01 7 53103868 53103868 G A POM121L12 Silent p.E168E 0.39 TCGA-77-7140-01 7 73483048 73483048 A C ELN 3'UTR 0.33 TCGA-77-7140-01 7 81359065 81359065 G C HGF Missense_Mutation p.P299R 0.08 tolerated(0.51) benign(0.056) TCGA-77-7140-01 8 113347581 113347581 C A CSMD3 Missense_Mutation p.G2381V 0.51 deleterious(0) probably_damaging(0.997) TCGA-77-7140-01 8 22162373 22162373 C G PIWIL2 Missense_Mutation p.H483D 0.41 tolerated(0.61) benign(0) TCGA-77-7140-01 8 27308576 27308596 TGAATGATAAGTCCCCATTGG - PTK2B Splice_Site p.X836_splice 0.25 TCGA-77-7140-01 8 30705611 30705611 G T TEX15 Missense_Mutation p.T308K 0.26 deleterious(0.01) benign(0.014) TCGA-77-7140-01 8 38196084 38196084 C A WHSC1L1 Missense_Mutation p.R239S 0.11 tolerated(0.51) benign(0.004) TCGA-77-7140-01 8 97621613 97621613 C T SDC2 Missense_Mutation p.A148V 0.24 deleterious(0) probably_damaging(0.999) TCGA-77-7140-01 9 103348428 103348428 C G MURC Missense_Mutation p.P264A 0.21 deleterious(0) probably_damaging(1) TCGA-77-7140-01 9 110062433 110062433 G A RAD23B Silent p.L26L 0.24 TCGA-77-7140-01 9 120476746 120476746 G C TLR4 Missense_Mutation p.R780S 0.89 deleterious(0) possibly_damaging(0.862) TCGA-77-7140-01 9 124910449 124910449 T A NDUFA8 Missense_Mutation p.D108V 0.05 deleterious(0) probably_damaging(0.998) TCGA-77-7140-01 9 130911836 130911836 C T LCN2 Missense_Mutation p.A11V 0.85 tolerated(1) unknown(0) TCGA-77-7140-01 9 131117743 131117743 G A SLC27A4 Missense_Mutation p.R510H 0.84 deleterious(0) probably_damaging(1) TCGA-77-7140-01 9 136406122 136406122 T A ADAMTSL2 Silent p.L227L 0.92 TCGA-77-7140-01 9 136906990 136906990 C G BRD3 Silent p.V433V 0.78 TCGA-77-7140-01 9 19357088 19357088 T A DENND4C Missense_Mutation p.F1585I 0.81 tolerated(0.1) benign(0.323) TCGA-77-7140-01 9 32630916 32630916 C T TAF1L Silent p.K1554K 0.50 TCGA-77-7140-01 9 32632434 32632434 C T TAF1L Silent p.V1048V 0.82 TCGA-77-7140-01 9 5921021 5921021 T A KIAA2026 Missense_Mutation p.N1659Y 0.43 deleterious(0.01) possibly_damaging(0.731) TCGA-77-7140-01 X 107037859 107037859 C T NCBP2L Missense_Mutation p.R137C 0.20 deleterious(0.02) benign(0.415) TCGA-77-7140-01 X 108631836 108631836 G C GUCY2F Silent p.G946G 0.16 TCGA-77-7140-01 X 109922620 109922620 G C CHRDL1 Missense_Mutation p.S397C 0.33 deleterious(0.01) probably_damaging(0.931) TCGA-77-7140-01 X 110574266 110574266 C A DCX Missense_Mutation p.C352F 0.15 deleterious(0.05) possibly_damaging(0.735) TCGA-77-7140-01 X 119589413 119589443 TGGTTACAGTTTTCTAAAAGAAATAGAAATT - LAMP2 Splice_Site p.X62_splice 0.30 TCGA-77-7140-01 X 119760007 119760007 C G C1GALT1C1 3'UTR 0.15 TCGA-77-7140-01 X 131208266 131208266 C G MST4 3'UTR 0.44 TCGA-77-7140-01 X 135961403 135961403 C G RBMX Intron 0.11 TCGA-77-7140-01 X 144329125 144329125 A T SPANXN1 Missense_Mutation p.S7C 0.33 deleterious(0) probably_damaging(0.999) TCGA-77-7140-01 X 150840994 150840994 G A PASD1 Missense_Mutation p.V593I 0.10 tolerated(0.16) benign(0.064) TCGA-77-7140-01 X 151283870 151283870 C T RP11-1007I13.4 RNA 0.60 TCGA-77-7140-01 X 153130540 153130540 C T L1CAM Intron 0.16 TCGA-77-7140-01 X 24229019 24229019 G C ZFX Missense_Mutation p.L648F 0.42 deleterious(0) probably_damaging(0.999) TCGA-77-7140-01 X 27765776 27765776 G T DCAF8L2 Missense_Mutation p.W255L 0.43 deleterious(0) probably_damaging(0.982) TCGA-77-7140-01 X 27765777 27765777 G T DCAF8L2 Missense_Mutation p.W255C 0.43 deleterious(0) possibly_damaging(0.801) TCGA-77-7140-01 X 47001672 47001672 G T NDUFB11 3'UTR 0.27 TCGA-77-7140-01 X 54496784 54496784 G C FGD1 Missense_Mutation p.L256V 0.17 tolerated(0.36) benign(0.001) TCGA-77-7140-01 X 54837309 54837309 G T MAGED2 Missense_Mutation p.G198V 0.15 tolerated(0.2) possibly_damaging(0.548) TCGA-77-7140-01 X 54953020 54953020 C A TRO Silent p.V554V 0.21 TCGA-77-7141-01 10 101124712 101124712 A T CNNM1 Missense_Mutation p.D710V 0.28 tolerated(0.19) benign(0.003) TCGA-77-7141-01 10 101835811 101835811 G T CPN1 Missense_Mutation p.R93S 0.38 deleterious(0) probably_damaging(1) TCGA-77-7141-01 10 102242391 102242391 G A WNT8B Missense_Mutation p.G292R 0.12 tolerated(0.38) benign(0.002) TCGA-77-7141-01 10 112257893 112257893 C T DUSP5 Missense_Mutation p.S5L 0.26 deleterious(0.03) benign(0.007) TCGA-77-7141-01 10 114169314 114169314 G C ACSL5 Silent p.L250L 0.12 TCGA-77-7141-01 10 115526254 115526254 C T PLEKHS1 Missense_Mutation p.S32F 0.27 deleterious(0) probably_damaging(0.986) TCGA-77-7141-01 10 115534089 115534089 C A PLEKHS1 Missense_Mutation p.S253Y 0.10 deleterious(0) probably_damaging(0.993) TCGA-77-7141-01 10 115987046 115987046 G T TDRD1 Missense_Mutation p.A1131S 0.38 tolerated(0.33) benign(0.024) TCGA-77-7141-01 10 116070144 116070144 G A AFAP1L2 Missense_Mutation p.T284I 0.19 tolerated(0.71) benign(0.002) TCGA-77-7141-01 10 123324058 123324058 C T FGFR2 Missense_Mutation p.D138N 0.20 tolerated(0.21) possibly_damaging(0.663) TCGA-77-7141-01 10 129901841 129901841 C A MKI67 Nonsense_Mutation p.E2755* 0.25 TCGA-77-7141-01 10 129913404 129913404 C G MKI67 Missense_Mutation p.R423T 0.09 deleterious(0) probably_damaging(0.915) TCGA-77-7141-01 10 129913651 129913651 C G MKI67 Missense_Mutation p.E341Q 0.13 tolerated(0.09) benign(0.109) TCGA-77-7141-01 10 13164422 13164422 G C OPTN Missense_Mutation p.E273Q 0.14 deleterious(0.03) possibly_damaging(0.756) TCGA-77-7141-01 10 16893326 16893326 C A CUBN Missense_Mutation p.A3191S 0.24 tolerated(0.05) probably_damaging(0.998) TCGA-77-7141-01 10 16911854 16911854 T A CUBN Splice_Site p.X3079_splice 0.37 TCGA-77-7141-01 10 18242294 18242294 C T SLC39A12 Missense_Mutation p.S30L 0.07 tolerated(0.28) benign(0.013) TCGA-77-7141-01 10 21101821 21101821 G T NEBL Missense_Mutation p.P799T 0.11 deleterious(0) possibly_damaging(0.883) TCGA-77-7141-01 10 25883196 25883196 T - GPR158 Intron 0.13 TCGA-77-7141-01 10 37438589 37438589 G T ANKRD30A Missense_Mutation p.K462N 0.19 tolerated(0.19) possibly_damaging(0.788) TCGA-77-7141-01 10 43016561 43016561 T A ZNF37BP RNA 0.25 TCGA-77-7141-01 10 43612133 43612133 G C RET Silent p.L746L 0.24 TCGA-77-7141-01 10 45799376 45799376 G A OR13A1 Silent p.A165A 0.27 TCGA-77-7141-01 10 47087470 47087470 C T NPY4R Silent p.F229F 0.05 TCGA-77-7141-01 10 55600215 55600215 T A PCDH15 Missense_Mutation p.K1283M 0.19 deleterious(0.05) probably_damaging(0.971) TCGA-77-7141-01 10 6139135 6139135 C T RBM17 Missense_Mutation p.A36V 0.35 deleterious(0.04) probably_damaging(0.985) TCGA-77-7141-01 10 72360391 72360391 G C PRF1 Missense_Mutation p.L90V 0.11 tolerated(0.16) benign(0.081) TCGA-77-7141-01 10 7327828 7327828 A T SFMBT2 Silent p.G175G 0.27 TCGA-77-7141-01 10 74618932 74618932 C T MCU Intron 0.28 TCGA-77-7141-01 10 75555301 75555301 G C ZSWIM8 Missense_Mutation p.M971I 0.10 deleterious(0.01) possibly_damaging(0.786) TCGA-77-7141-01 10 7785196 7785196 T A ITIH2 Missense_Mutation p.L728H 0.10 deleterious(0) probably_damaging(0.966) TCGA-77-7141-01 10 88231984 88231984 G C WAPAL Missense_Mutation p.L671V 0.08 tolerated(0.09) possibly_damaging(0.544) TCGA-77-7141-01 10 88441375 88441375 G C LDB3 Silent p.L168L 0.21 TCGA-77-7141-01 10 90045167 90045167 C G RNLS Missense_Mutation p.D325H 0.14 deleterious(0) probably_damaging(1) TCGA-77-7141-01 11 101786076 101786076 G A KIAA1377 Missense_Mutation p.D21N 0.04 tolerated_low_confidence(0.06) benign(0.064) TCGA-77-7141-01 11 103055652 103055652 G T DYNC2H1 Missense_Mutation p.V2169F 0.34 benign(0.045) TCGA-77-7141-01 11 103907815 103907815 C T DDI1 Missense_Mutation p.P89S 0.29 tolerated(0.37) benign(0.009) TCGA-77-7141-01 11 1097724 1097724 C G MUC2 Missense_Mutation p.L2273V 0.28 unknown(0) TCGA-77-7141-01 11 111779506 111779506 G A CRYAB Silent p.T170T 0.08 TCGA-77-7141-01 11 111865829 111865829 A T DIXDC1 Missense_Mutation p.R507S 0.29 tolerated(0.08) benign(0.294) TCGA-77-7141-01 11 1162279 1162279 C G MUC5AC Missense_Mutation p.F596L 0.14 deleterious(0) probably_damaging(0.993) TCGA-77-7141-01 11 116691846 116691846 A G APOA4 Missense_Mutation p.Y310H 0.38 tolerated(0.21) benign(0.209) TCGA-77-7141-01 11 117869789 117869789 G A IL10RA Silent p.Q390Q 0.20 TCGA-77-7141-01 11 120329897 120329897 G A AP000758.1 Nonsense_Mutation p.Q51* 0.08 TCGA-77-7141-01 11 120989227 120989227 G T TECTA Missense_Mutation p.G335C 0.16 deleterious(0) probably_damaging(1) TCGA-77-7141-01 11 123810481 123810481 C T OR4D5 Missense_Mutation p.P53L 0.28 tolerated(0.07) benign(0.014) TCGA-77-7141-01 11 123810741 123810741 G C OR4D5 Missense_Mutation p.V140L 0.34 tolerated(0.59) benign(0.186) TCGA-77-7141-01 11 124120892 124120892 C G OR8G1 Nonsense_Mutation p.S157* 0.23 TCGA-77-7141-01 11 124134850 124134850 T C OR8G5 Missense_Mutation p.F43S 0.31 tolerated(0.45) benign(0) TCGA-77-7141-01 11 124489814 124489814 T C PANX3 Missense_Mutation p.C388R 0.29 tolerated(0.44) benign(0.02) TCGA-77-7141-01 11 124623797 124623797 C G ESAM Missense_Mutation p.K306N 0.12 deleterious(0) possibly_damaging(0.887) TCGA-77-7141-01 11 124744731 124744731 G A ROBO3 Missense_Mutation p.G667R 0.31 tolerated(0.09) possibly_damaging(0.83) TCGA-77-7141-01 11 128638068 128638068 G A FLI1 Missense_Mutation p.E96K 0.30 tolerated(0.08) benign(0.426) TCGA-77-7141-01 11 128841004 128841004 C A ARHGAP32 Missense_Mutation p.M1354I 0.27 tolerated_low_confidence(0.61) benign(0) TCGA-77-7141-01 11 132016408 132016408 G C NTM Missense_Mutation p.V134L 0.48 deleterious(0.01) probably_damaging(0.91) TCGA-77-7141-01 11 132290107 132290107 G T OPCML Missense_Mutation p.H340N 0.40 tolerated(0.3) benign(0.063) TCGA-77-7141-01 11 133816029 133816029 G C IGSF9B Missense_Mutation p.F63L 0.26 tolerated(0.31) probably_damaging(0.991) TCGA-77-7141-01 11 134023096 134023096 C G NCAPD3 Splice_Site p.X1443_splice 0.05 TCGA-77-7141-01 11 30032515 30032515 T G KCNA4 Missense_Mutation p.T571P 0.11 deleterious(0) probably_damaging(0.947) TCGA-77-7141-01 11 45672419 45672419 G A CHST1 Nonsense_Mutation p.Q19* 0.31 TCGA-77-7141-01 11 45827431 45827431 G A SLC35C1 Missense_Mutation p.E27K 0.06 tolerated_low_confidence(0.41) benign(0.004) TCGA-77-7141-01 11 46456511 46456511 G C AMBRA1 Silent p.L813L 0.12 TCGA-77-7141-01 11 47599089 47599089 C T KBTBD4 Missense_Mutation p.D171N 0.55 deleterious(0.01) possibly_damaging(0.653) TCGA-77-7141-01 11 5270646 5270646 C G HBG1 Silent p.L89L 0.11 TCGA-77-7141-01 11 55587306 55587306 C A OR5D18 Silent p.L67L 0.16 TCGA-77-7141-01 11 55659123 55659123 G C TRIM51 3'UTR 0.08 TCGA-77-7141-01 11 55873426 55873426 G A OR8H2 Missense_Mutation p.R303K 0.11 tolerated(0.35) benign(0.012) TCGA-77-7141-01 11 56020050 56020050 C A OR5T3 Silent p.I125I 0.41 TCGA-77-7141-01 11 56185233 56185233 T A OR5R1 Missense_Mutation p.H159L 0.05 tolerated(0.81) possibly_damaging(0.86) TCGA-77-7141-01 11 56380600 56380600 A G OR5M1 Missense_Mutation p.C127R 0.41 deleterious(0) benign(0.027) TCGA-77-7141-01 11 57081087 57081087 C T TNKS1BP1 Missense_Mutation p.E359K 0.50 tolerated(0.51) benign(0.051) TCGA-77-7141-01 11 57798577 57798577 G T OR6Q1 Silent p.V51V 0.06 TCGA-77-7141-01 11 57958248 57958248 C G OR9Q2 Missense_Mutation p.R96G 0.08 tolerated(1) benign(0.041) TCGA-77-7141-01 11 58034623 58034623 G C OR10W1 Silent p.L236L 0.36 TCGA-77-7141-01 11 58604868 58604868 C T GLYATL2 Silent p.E63E 0.35 TCGA-77-7141-01 11 59271723 59271723 G A OR4D11 Silent p.L225L 0.37 TCGA-77-7141-01 11 61113904 61113904 G C DAK Missense_Mutation p.E553Q 0.08 tolerated(0.57) benign(0.016) TCGA-77-7141-01 11 6239076 6239076 C T FAM160A2 Silent p.R594R 0.70 TCGA-77-7141-01 11 6340296 6340296 G A PRKCDBP 3'UTR 0.56 TCGA-77-7141-01 11 6412727 6412727 G T SMPD1 Missense_Mutation p.M144I 0.74 tolerated(0.25) benign(0.002) TCGA-77-7141-01 11 64527157 64527157 G T PYGM Missense_Mutation p.Q72K 0.18 deleterious(0.04) probably_damaging(0.985) TCGA-77-7141-01 11 65294506 65294506 G A SCYL1 Missense_Mutation p.R256H 0.14 tolerated(0.1) benign(0.001) TCGA-77-7141-01 11 66052428 66052428 G C YIF1A Silent p.L217L 0.14 TCGA-77-7141-01 11 66190290 66190290 T C NPAS4 Silent p.C192C 0.31 TCGA-77-7141-01 11 6632198 6632198 G A TAF10 Silent p.L204L 0.08 TCGA-77-7141-01 11 66638316 66638316 G C PC Silent p.A227A 0.35 TCGA-77-7141-01 11 6816225 6816225 G T OR6A2 Missense_Mutation p.R239S 0.60 deleterious(0) probably_damaging(0.91) TCGA-77-7141-01 11 69588197 69588197 G T FGF4 Missense_Mutation p.N167K 0.31 deleterious(0) probably_damaging(0.996) TCGA-77-7141-01 11 7021424 7021424 G A ZNF214 Missense_Mutation p.P497L 0.15 deleterious(0) probably_damaging(0.995) TCGA-77-7141-01 11 7064071 7064071 G C NLRP14 Missense_Mutation p.E272Q 0.08 tolerated(0.05) possibly_damaging(0.658) TCGA-77-7141-01 11 77090374 77090374 C G PAK1 Missense_Mutation p.Q117H 0.08 deleterious(0) probably_damaging(0.999) TCGA-77-7141-01 11 77934677 77934677 C T GAB2 Missense_Mutation p.D450N 0.05 deleterious(0) possibly_damaging(0.645) TCGA-77-7141-01 11 8120314 8120314 G A TUB Silent p.L391L 0.16 TCGA-77-7141-01 11 82642950 82642950 C T C11orf82 Silent p.F190F 0.07 TCGA-77-7141-01 11 88780597 88780597 C G GRM5 Silent p.G148G 0.28 TCGA-77-7141-01 11 92881671 92881671 A G SLC36A4 3'UTR 0.31 TCGA-77-7141-01 12 100594589 100594589 A C ACTR6 5'UTR 0.09 TCGA-77-7141-01 12 100811850 100811850 C A SLC17A8 Missense_Mutation p.S447R 0.27 deleterious(0) probably_damaging(0.999) TCGA-77-7141-01 12 10168278 10168278 C G CLEC12B Missense_Mutation p.S211C 0.31 deleterious(0.02) possibly_damaging(0.905) TCGA-77-7141-01 12 104089336 104089336 C G STAB2 Silent p.V1128V 0.42 TCGA-77-7141-01 12 111351996 111351996 G T MYL2 Missense_Mutation p.L90I 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-77-7141-01 12 111352065 111352065 C G MYL2 Missense_Mutation p.D67H 0.10 deleterious(0) possibly_damaging(0.857) TCGA-77-7141-01 12 11149758 11149758 G A TAS2R20 Silent p.A239A 0.34 TCGA-77-7141-01 12 111779638 111779638 C T CUX2 Missense_Mutation p.P1147L 0.40 deleterious(0) benign(0.216) TCGA-77-7141-01 12 113319644 113319644 C A RPH3A Missense_Mutation p.A440D 0.29 deleterious(0) probably_damaging(0.983) TCGA-77-7141-01 12 115121046 115121046 C A TBX3 5'UTR 0.32 TCGA-77-7141-01 12 117914379 117914379 G A KSR2 Silent p.I824I 0.54 TCGA-77-7141-01 12 118599702 118599702 A G TAOK3 Missense_Mutation p.L677S 0.13 tolerated(0.71) benign(0.005) TCGA-77-7141-01 12 118818034 118818034 A G SUDS3 Silent p.E70E 0.25 TCGA-77-7141-01 12 120597984 120597984 G C GCN1L1 Missense_Mutation p.L838V 0.09 benign(0.069) TCGA-77-7141-01 12 122745850 122745850 G A VPS33A Silent p.F147F 0.08 TCGA-77-7141-01 12 125834065 125834065 G T TMEM132B Silent p.T40T 0.30 TCGA-77-7141-01 12 130941123 130941123 C G RIMBP2 Silent p.A75A 0.37 TCGA-77-7141-01 12 13221361 13221361 G C KIAA1467 Missense_Mutation p.L422F 0.13 tolerated(0.38) possibly_damaging(0.761) TCGA-77-7141-01 12 13256401 13256401 C T GSG1 Missense_Mutation p.E16K 0.38 tolerated(1) benign(0.002) TCGA-77-7141-01 12 133306339 133306339 C G ANKLE2 Missense_Mutation p.L803F 0.24 tolerated(0.14) probably_damaging(0.976) TCGA-77-7141-01 12 133683140 133683140 C G ZNF140 Nonsense_Mutation p.S426* 0.13 TCGA-77-7141-01 12 22354581 22354581 C T ST8SIA1 Missense_Mutation p.E326K 0.21 tolerated(0.82) probably_damaging(0.999) TCGA-77-7141-01 12 274611 274611 T C IQSEC3 Silent p.L907L 0.05 TCGA-77-7141-01 12 30819141 30819141 G C IPO8 Missense_Mutation p.L397V 0.05 tolerated(0.13) benign(0.381) TCGA-77-7141-01 12 3768793 3768793 G T EFCAB4B Silent p.I233I 0.25 TCGA-77-7141-01 12 41327546 41327546 G T CNTN1 Missense_Mutation p.S284I 0.28 tolerated(0.08) benign(0.38) TCGA-77-7141-01 12 45810514 45810514 G C ANO6 Missense_Mutation p.A703P 0.08 deleterious(0) probably_damaging(1) TCGA-77-7141-01 12 47173447 47173447 G C SLC38A4 Missense_Mutation p.L222V 0.07 deleterious(0) possibly_damaging(0.651) TCGA-77-7141-01 12 49087578 49087579 - A CCNT1 Frame_Shift_Ins p.S474Vfs*18 0.23 TCGA-77-7141-01 12 49433962 49433962 G A KMT2D Missense_Mutation p.P2531S 0.37 benign(0.057) TCGA-77-7141-01 12 52646154 52646154 G A KRT7 3'Flank 0.07 TCGA-77-7141-01 12 53447245 53447245 C G TENC1 Intron 0.12 TCGA-77-7141-01 12 54686942 54686942 G C NFE2 Nonsense_Mutation p.S113* 0.09 TCGA-77-7141-01 12 54903472 54903472 C G NCKAP1L Missense_Mutation p.L176V 0.19 deleterious(0) probably_damaging(0.992) TCGA-77-7141-01 12 56553401 56553401 G C MYL6 Missense_Mutation p.R21P 0.06 deleterious(0.02) benign(0.001) TCGA-77-7141-01 12 58125237 58125237 C T AGAP2 Missense_Mutation p.R686Q 0.16 deleterious(0.01) probably_damaging(0.982) TCGA-77-7141-01 12 58160740 58160740 C G CYP27B1 Missense_Mutation p.E29Q 0.08 tolerated(0.58) benign(0.001) TCGA-77-7141-01 12 66547221 66547221 C G TMBIM4 Silent p.L35L 0.10 TCGA-77-7141-01 12 69991829 69991829 C G CCT2 Missense_Mutation p.S438C 0.15 deleterious(0.01) probably_damaging(0.958) TCGA-77-7141-01 12 7651597 7651597 T C CD163 Silent p.G215G 0.13 TCGA-77-7141-01 12 77449646 77449646 C T E2F7 Missense_Mutation p.D120N 0.09 deleterious(0.05) benign(0.041) TCGA-77-7141-01 12 78452885 78452885 G T NAV3 Missense_Mutation p.D876Y 0.34 deleterious(0) probably_damaging(0.987) TCGA-77-7141-01 12 78511834 78511834 A T NAV3 Missense_Mutation p.T933S 0.23 tolerated(0.62) benign(0.06) TCGA-77-7141-01 12 81537007 81537007 G T ACSS3 Missense_Mutation p.G301V 0.32 deleterious(0) probably_damaging(0.999) TCGA-77-7141-01 12 8202209 8202209 T C FOXJ2 Intron 0.36 TCGA-77-7141-01 12 8289389 8289389 C T CLEC4A Silent p.F152F 0.21 TCGA-77-7141-01 12 9984967 9984967 G C KLRF1 Silent p.V47V 0.13 TCGA-77-7141-01 13 101833328 101833328 G C NALCN Intron 0.80 TCGA-77-7141-01 13 108862065 108862065 G A LIG4 Silent p.L518L 0.64 TCGA-77-7141-01 13 114128473 114128473 G A DCUN1D2 Silent p.F162F 0.22 TCGA-77-7141-01 13 25376673 25376673 C G RNF17 Missense_Mutation p.S638C 0.09 deleterious(0) probably_damaging(0.971) TCGA-77-7141-01 13 25424525 25424525 C G RNF17 Missense_Mutation p.L1050V 0.18 deleterious(0.03) possibly_damaging(0.899) TCGA-77-7141-01 13 25480175 25480175 C G CENPJ Missense_Mutation p.L667F 0.68 tolerated(0.14) benign(0.131) TCGA-77-7141-01 13 25743770 25743770 G C AMER2 Missense_Mutation p.A663G 0.68 deleterious(0) probably_damaging(0.996) TCGA-77-7141-01 13 29008352 29008352 T A FLT1 Silent p.P173P 0.68 TCGA-77-7141-01 13 29600504 29600504 G T MTUS2 Missense_Mutation p.D567Y 0.62 deleterious(0) possibly_damaging(0.891) TCGA-77-7141-01 13 33703508 33703508 C G STARD13 Missense_Mutation p.E436Q 0.11 tolerated(1) benign(0) TCGA-77-7141-01 13 49781371 49781371 A T FNDC3A Missense_Mutation p.Q1146L 0.82 tolerated(0.11) benign(0.01) TCGA-77-7141-01 13 52511735 52511735 C A ATP7B Missense_Mutation p.K1260N 0.07 tolerated(0.11) possibly_damaging(0.776) TCGA-77-7141-01 13 52646082 52646082 G A NEK5 Missense_Mutation p.A641V 0.23 tolerated(0.07) benign(0.242) TCGA-77-7141-01 13 53422342 53422342 C T PCDH8 Missense_Mutation p.R77H 0.21 deleterious(0.03) probably_damaging(0.976) TCGA-77-7141-01 13 60686252 60686252 C G DIAPH3 Missense_Mutation p.K94N 0.12 tolerated(0.24) possibly_damaging(0.632) TCGA-77-7141-01 13 70456459 70456459 T A KLHL1 Missense_Mutation p.S395C 0.12 deleterious(0.02) probably_damaging(0.957) TCGA-77-7141-01 13 97484874 97484874 G C HS6ST3 Missense_Mutation p.E280Q 0.12 deleterious(0.03) probably_damaging(1) TCGA-77-7141-01 13 99575624 99575624 T G DOCK9 Missense_Mutation p.K140Q 0.04 deleterious(0.01) probably_damaging(0.999) TCGA-77-7141-01 14 106621960 106621960 C A IGHV3-16 Missense_Mutation p.R95S 0.66 deleterious_low_confidence(0) benign(0.065) TCGA-77-7141-01 14 106621961 106621961 C A IGHV3-16 Missense_Mutation p.R95M 0.66 deleterious_low_confidence(0) possibly_damaging(0.703) TCGA-77-7141-01 14 106691915 106691915 G T IGHV3-21 Missense_Mutation p.L37M 0.61 deleterious_low_confidence(0.01) possibly_damaging(0.895) TCGA-77-7141-01 14 19988227 19988227 G T POTEM 3'UTR 0.31 TCGA-77-7141-01 14 20216033 20216033 C A OR4Q3 Nonsense_Mutation p.C149* 0.58 TCGA-77-7141-01 14 20820450 20820450 G C PARP2 Missense_Mutation p.E195Q 0.10 tolerated(0.22) benign(0.141) TCGA-77-7141-01 14 21852022 21852022 C T SUPT16H Missense_Mutation p.R22Q 0.14 tolerated(0.2) benign(0.002) TCGA-77-7141-01 14 22600559 22600559 G C TRAV8-7 Silent p.L15L 0.13 TCGA-77-7141-01 14 24900961 24900961 C G KHNYN Missense_Mutation p.S165C 0.10 tolerated(0.05) benign(0.007) TCGA-77-7141-01 14 35240820 35240820 A G BAZ1A Silent p.N1066N 0.40 TCGA-77-7141-01 14 44975934 44975934 T A FSCB Missense_Mutation p.K86M 0.34 tolerated(0.08) benign(0.241) TCGA-77-7141-01 14 52535501 52535501 C A NID2 Missense_Mutation p.R71L 0.64 tolerated(0.11) benign(0.081) TCGA-77-7141-01 14 59113097 59113097 C A DACT1 Missense_Mutation p.H586N 0.29 deleterious(0.05) benign(0.104) TCGA-77-7141-01 14 59970652 59970652 C T JKAMP Silent p.I266I 0.06 TCGA-77-7141-01 14 61278708 61278708 C T MNAT1 Nonsense_Mutation p.R142* 0.11 TCGA-77-7141-01 14 68050784 68050784 C G PLEKHH1 Missense_Mutation p.I1214M 0.19 deleterious(0) possibly_damaging(0.469) TCGA-77-7141-01 14 92555099 92555099 A C ATXN3 Silent p.L150L 0.24 TCGA-77-7141-01 14 95670271 95670271 T C CLMN Missense_Mutation p.K472R 0.12 tolerated_low_confidence(0.16) benign(0.006) TCGA-77-7141-01 15 25449540 25449540 A C SNORD115-19 RNA 0.06 TCGA-77-7141-01 15 25932847 25932847 T A ATP10A Intron 0.51 TCGA-77-7141-01 15 33765617 33765617 C A RYR3 Intron 0.14 TCGA-77-7141-01 15 35742949 35742949 C G DPH6 Missense_Mutation p.D148H 0.11 deleterious(0.02) possibly_damaging(0.489) TCGA-77-7141-01 15 40093531 40093531 G C GPR176 Silent p.S450S 0.60 TCGA-77-7141-01 15 40678588 40678588 G C KNSTRN Missense_Mutation p.K110N 0.09 deleterious(0) probably_damaging(0.951) TCGA-77-7141-01 15 41476137 41476137 G C EXD1 Missense_Mutation p.L513V 0.11 deleterious_low_confidence(0.02) benign(0.214) TCGA-77-7141-01 15 50822029 50822029 G A USP50 Missense_Mutation p.R301W 0.09 deleterious(0.02) probably_damaging(0.932) TCGA-77-7141-01 15 53907716 53907716 C A WDR72 Missense_Mutation p.R896L 0.37 tolerated(0.19) benign(0.011) TCGA-77-7141-01 15 56387628 56387628 G C RFX7 Silent p.L766L 0.16 TCGA-77-7141-01 15 60803512 60803512 A T RORA Missense_Mutation p.C278S 0.39 tolerated(0.33) benign(0.001) TCGA-77-7141-01 15 63988336 63988336 A G HERC1 Missense_Mutation p.L1703S 0.33 possibly_damaging(0.841) TCGA-77-7141-01 15 74005300 74005300 A T CD276 3'UTR 0.37 TCGA-77-7141-01 15 74888075 74888075 G A ARID3B Missense_Mutation p.G548D 0.06 deleterious(0.01) probably_damaging(1) TCGA-77-7141-01 15 75684593 75684593 G C SIN3A Silent p.L947L 0.07 TCGA-77-7141-01 15 76426578 76426578 G C C15orf27 5'UTR 0.06 TCGA-77-7141-01 15 81641860 81641860 C G TMC3 Missense_Mutation p.D378H 0.16 deleterious(0) probably_damaging(0.928) TCGA-77-7141-01 15 82336112 82336112 G C MEX3B Missense_Mutation p.P367A 0.10 tolerated(0.32) unknown(0) TCGA-77-7141-01 15 89074174 89074174 T - DET1 Frame_Shift_Del p.T266Pfs*97 0.31 TCGA-77-7141-01 15 89698600 89698600 G T ABHD2 Missense_Mutation p.D125Y 0.32 deleterious(0) possibly_damaging(0.873) TCGA-77-7141-01 16 19194886 19194886 A G SYT17 Missense_Mutation p.D123G 0.07 deleterious(0) probably_damaging(0.996) TCGA-77-7141-01 16 20976404 20976404 A C DNAH3 Missense_Mutation p.D2934E 0.21 tolerated(0.2) possibly_damaging(0.79) TCGA-77-7141-01 16 2225343 2225343 G C TRAF7 Silent p.R476R 0.19 TCGA-77-7141-01 16 22385696 22385696 C G CDR2 5'UTR 0.19 TCGA-77-7141-01 16 24964319 24964319 C G ARHGAP17 Silent p.L299L 0.14 TCGA-77-7141-01 16 30666273 30666273 C G PRR14 Missense_Mutation p.L328V 0.13 deleterious(0) probably_damaging(0.999) TCGA-77-7141-01 16 30749802 30749802 C T SRCAP Missense_Mutation p.S2814L 0.09 unknown(0) TCGA-77-7141-01 16 31090482 31090482 G T ZNF646 Missense_Mutation p.R946L 0.26 deleterious(0.01) probably_damaging(0.995) TCGA-77-7141-01 16 31434500 31434500 A C ITGAD Missense_Mutation p.E949A 0.09 tolerated(0.08) benign(0.015) TCGA-77-7141-01 16 31499801 31499801 C T SLC5A2 Silent p.L373L 0.19 TCGA-77-7141-01 16 3282885 3282885 C T ZNF200 Missense_Mutation p.G96E 0.30 tolerated_low_confidence(0.14) benign(0.025) TCGA-77-7141-01 16 32890817 32890817 T G SLC6A10P RNA 0.17 TCGA-77-7141-01 16 32891884 32891884 G C SLC6A10P RNA 0.21 TCGA-77-7141-01 16 424286 424286 C A TMEM8A Missense_Mutation p.V564F 0.38 deleterious(0) probably_damaging(0.963) TCGA-77-7141-01 16 4516292 4516292 C G NMRAL1 Missense_Mutation p.D131H 0.11 deleterious(0) probably_damaging(1) TCGA-77-7141-01 16 4827785 4827785 G A SEPT12 3'UTR 0.40 TCGA-77-7141-01 16 51175035 51175035 G A SALL1 Silent p.S366S 0.15 TCGA-77-7141-01 16 51185132 51185132 C T SALL1 Silent p.A7A 0.11 TCGA-77-7141-01 16 53721857 53721857 C G RPGRIP1L Missense_Mutation p.D184H 0.29 deleterious(0.01) benign(0.396) TCGA-77-7141-01 16 53844120 53844120 C G FTO Missense_Mutation p.F38L 0.17 deleterious(0) probably_damaging(0.998) TCGA-77-7141-01 16 71570613 71570613 G T CHST4 Silent p.L11L 0.65 TCGA-77-7141-01 16 739461 739461 C T WDR24 Silent p.V60V 0.34 TCGA-77-7141-01 16 74660307 74660307 G A RFWD3 Silent p.F705F 0.17 TCGA-77-7141-01 16 75301865 75301865 C T BCAR1 5'Flank 0.59 TCGA-77-7141-01 16 75327885 75327885 C G CFDP1 Missense_Mutation p.E289Q 0.06 deleterious(0) probably_damaging(0.999) TCGA-77-7141-01 16 77225445 77225445 G T MON1B Silent p.T21T 0.40 TCGA-77-7141-01 16 81398960 81398960 G C GAN Missense_Mutation p.G460A 0.30 tolerated(0.07) benign(0.422) TCGA-77-7141-01 16 88767696 88767696 C T RNF166 Missense_Mutation p.A96T 0.30 tolerated(0.39) benign(0.222) TCGA-77-7141-01 16 89348071 89348071 C T ANKRD11 Missense_Mutation p.A1627T 0.07 benign(0.003) TCGA-77-7141-01 17 10358334 10358334 G C MYH4 Missense_Mutation p.Q787E 0.57 tolerated(0.31) benign(0.001) TCGA-77-7141-01 17 10411721 10411721 G C MYH1 Missense_Mutation p.T619S 0.59 deleterious(0) benign(0.075) TCGA-77-7141-01 17 14095414 14095414 C A COX10 Missense_Mutation p.F268L 0.11 tolerated(0.24) benign(0.173) TCGA-77-7141-01 17 1557167 1557167 G T PRPF8 Missense_Mutation p.T2044N 0.58 deleterious(0) possibly_damaging(0.781) TCGA-77-7141-01 17 17697074 17697074 C T RAI1 Missense_Mutation p.S271L 0.74 deleterious(0.05) benign(0.167) TCGA-77-7141-01 17 18167826 18167826 G A MIEF2 Silent p.G382G 0.11 TCGA-77-7141-01 17 19091380 19091380 T G SNORD3A RNA 0.17 TCGA-77-7141-01 17 19470503 19470503 G T SLC47A1 Missense_Mutation p.G424V 0.57 deleterious(0.01) probably_damaging(0.997) TCGA-77-7141-01 17 27849472 27849472 C T TAOK1 Nonsense_Mutation p.R695* 0.31 TCGA-77-7141-01 17 33802121 33802121 C G SLFN12L Missense_Mutation p.D530H 0.36 tolerated(0.07) probably_damaging(0.96) TCGA-77-7141-01 17 34072362 34072362 C A GAS2L2 Missense_Mutation p.K718N 0.40 deleterious(0.05) possibly_damaging(0.463) TCGA-77-7141-01 17 37094850 37094850 C G FBXO47 Missense_Mutation p.E407Q 0.06 deleterious(0.02) benign(0.051) TCGA-77-7141-01 17 39279891 39279891 G T KRTAP4-12 Missense_Mutation p.R162S 0.44 deleterious(0.02) unknown(0) TCGA-77-7141-01 17 39633397 39633397 G C KRT35 Missense_Mutation p.L427V 0.16 tolerated(0.7) benign(0.009) TCGA-77-7141-01 17 39872068 39872068 G A GAST Missense_Mutation p.E84K 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.874) TCGA-77-7141-01 17 39872118 39872118 G C GAST Missense_Mutation p.E100D 0.12 tolerated_low_confidence(0.57) benign(0.016) TCGA-77-7141-01 17 40125554 40125554 C T CNP Missense_Mutation p.P293L 0.06 tolerated(0.05) probably_damaging(0.928) TCGA-77-7141-01 17 40321552 40321552 G T KCNH4 Silent p.R511R 0.17 TCGA-77-7141-01 17 40725157 40725157 C T PSMC3IP Missense_Mutation p.E189K 0.30 deleterious(0) probably_damaging(1) TCGA-77-7141-01 17 40947834 40947834 G C WNK4 Missense_Mutation p.E1072Q 0.06 tolerated(0.06) probably_damaging(0.982) TCGA-77-7141-01 17 42744337 42744337 T G C17orf104 Nonsense_Mutation p.L353* 0.70 TCGA-77-7141-01 17 43173589 43173589 G C NMT1 Missense_Mutation p.E178Q 0.09 tolerated(0.1) benign(0.183) TCGA-77-7141-01 17 45886471 45886471 G C OSBPL7 Missense_Mutation p.T714R 0.04 tolerated(0.35) benign(0.087) TCGA-77-7141-01 17 48274387 48274387 C T COL1A1 Missense_Mutation p.G263E 0.28 unknown(0) TCGA-77-7141-01 17 48699083 48699083 C A CACNA1G Nonsense_Mutation p.C1996* 0.10 TCGA-77-7141-01 17 56437605 56437605 C A RNF43 Missense_Mutation p.R286L 0.47 deleterious(0) probably_damaging(1) TCGA-77-7141-01 17 56663220 56663220 G A TEX14 Silent p.G1010G 0.42 TCGA-77-7141-01 17 57290877 57290877 G C SMG8 Missense_Mutation p.R898T 0.10 deleterious(0) probably_damaging(0.993) TCGA-77-7141-01 17 61611655 61611655 C A KCNH6 Missense_Mutation p.R362S 0.40 tolerated(0.52) benign(0.08) TCGA-77-7141-01 17 62025285 62025285 T G SCN4A Missense_Mutation p.N1095H 0.15 deleterious(0) probably_damaging(0.995) TCGA-77-7141-01 17 64059164 64059164 C G CEP112 Missense_Mutation p.E331Q 0.07 tolerated(0.05) possibly_damaging(0.841) TCGA-77-7141-01 17 64213035 64213035 G T APOH Missense_Mutation p.P219T 0.28 tolerated(0.2) possibly_damaging(0.454) TCGA-77-7141-01 17 65683300 65683300 T C PITPNC1 Intron 0.25 TCGA-77-7141-01 17 72436907 72436907 A T GPRC5C Missense_Mutation p.Q376L 0.11 deleterious(0.04) benign(0.23) TCGA-77-7141-01 17 74136342 74136342 G C FOXJ1 Silent p.L45L 0.22 TCGA-77-7141-01 17 7577118 7577118 C A TP53 Missense_Mutation p.V274F 0.65 deleterious(0.03) benign(0.275) TCGA-77-7141-01 17 78086747 78086747 C G GAA Nonsense_Mutation p.S654* 0.11 TCGA-77-7141-01 17 80195666 80195666 C T SLC16A3 Silent p.F340F 0.14 TCGA-77-7141-01 18 2578962 2578962 A T NDC80 Silent p.T171T 0.76 TCGA-77-7141-01 18 2847853 2847853 C A EMILIN2 Missense_Mutation p.L61M 0.03 tolerated(0.13) probably_damaging(0.95) TCGA-77-7141-01 18 3452133 3452133 C T TGIF1 Silent p.L52L 0.05 TCGA-77-7141-01 18 5406785 5406785 G C EPB41L3 Silent p.V780V 0.23 TCGA-77-7141-01 18 59167715 59167715 T C CDH20 Missense_Mutation p.F214S 0.08 deleterious(0) probably_damaging(1) TCGA-77-7141-01 18 67992556 67992556 C A SOCS6 Missense_Mutation p.Q218K 0.20 deleterious_low_confidence(0) possibly_damaging(0.831) TCGA-77-7141-01 18 74962981 74962981 C G GALR1 Missense_Mutation p.I159M 0.42 deleterious(0) possibly_damaging(0.897) TCGA-77-7141-01 19 1014275 1014275 G C TMEM259 Silent p.A141A 0.08 TCGA-77-7141-01 19 10404799 10404799 G A ICAM5 Missense_Mutation p.D599N 0.25 tolerated(0.48) benign(0.3) TCGA-77-7141-01 19 1074641 1074641 C T HMHA1 Missense_Mutation p.S357L 0.31 tolerated(0.35) benign(0.001) TCGA-77-7141-01 19 12638472 12638472 G A ZNF564 Silent p.F150F 0.13 TCGA-77-7141-01 19 12958248 12958248 C G MAST1 Missense_Mutation p.R158G 0.17 deleterious(0) probably_damaging(0.994) TCGA-77-7141-01 19 14038076 14038076 G C CC2D1A Missense_Mutation p.E772Q 0.15 deleterious(0.02) probably_damaging(0.917) TCGA-77-7141-01 19 14507994 14507994 T G CD97 Missense_Mutation p.I195S 0.21 tolerated(0.36) benign(0.06) TCGA-77-7141-01 19 14562753 14562753 G A PKN1 Silent p.L367L 0.21 TCGA-77-7141-01 19 14707772 14707772 T A CLEC17A Missense_Mutation p.V177E 0.19 deleterious(0) possibly_damaging(0.9) TCGA-77-7141-01 19 16860445 16860445 G T NWD1 Missense_Mutation p.S331I 0.14 tolerated(0.18) benign(0.012) TCGA-77-7141-01 19 18305831 18305831 C G MPV17L2 Missense_Mutation p.R167G 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-77-7141-01 19 18864351 18864351 G C CRTC1 Missense_Mutation p.E210Q 0.35 tolerated(0.11) possibly_damaging(0.575) TCGA-77-7141-01 19 19154815 19154815 A G ARMC6 Missense_Mutation p.N71D 0.20 deleterious(0.03) possibly_damaging(0.548) TCGA-77-7141-01 19 19391074 19391074 C G SUGP1 Missense_Mutation p.E424Q 0.47 tolerated(0.23) possibly_damaging(0.635) TCGA-77-7141-01 19 1986925 1986925 G A BTBD2 Silent p.F440F 0.20 TCGA-77-7141-01 19 20044072 20044072 A G ZNF93 Missense_Mutation p.Y103C 0.56 deleterious(0.03) benign(0.077) TCGA-77-7141-01 19 20735323 20735324 - T ZNF737 Frame_Shift_Ins p.P62Tfs*8 0.19 TCGA-77-7141-01 19 22000750 22000750 C T ZNF43 Missense_Mutation p.E57K 0.17 tolerated(0.1) benign(0.057) TCGA-77-7141-01 19 2213766 2213766 G T DOT1L Intron 0.36 TCGA-77-7141-01 19 23170151 23170151 G T ZNF728 Missense_Mutation p.P62H 0.28 deleterious(0.01) probably_damaging(0.922) TCGA-77-7141-01 19 2353008 2353008 C G LLfos-48D6.1 Intron 0.11 TCGA-77-7141-01 19 23543658 23543658 T A ZNF91 Missense_Mutation p.H708L 0.33 deleterious(0) probably_damaging(0.937) TCGA-77-7141-01 19 2416696 2416696 C A TMPRSS9 Missense_Mutation p.L602M 0.22 deleterious(0.01) probably_damaging(0.989) TCGA-77-7141-01 19 30936447 30936447 G A ZNF536 Missense_Mutation p.E660K 0.55 tolerated(0.87) benign(0.033) TCGA-77-7141-01 19 31767488 31767488 G A TSHZ3 Missense_Mutation p.H1071Y 0.14 deleterious(0) probably_damaging(0.993) TCGA-77-7141-01 19 33444520 33444520 C A CEP89 Splice_Site p.X164_splice 0.05 TCGA-77-7141-01 19 35250797 35250797 C T ZNF599 Missense_Mutation p.M303I 0.66 deleterious(0) benign(0.098) TCGA-77-7141-01 19 35786535 35786535 G C MAG Missense_Mutation p.W22C 0.67 deleterious(0) probably_damaging(0.998) TCGA-77-7141-01 19 36237678 36237678 A G PSENEN Missense_Mutation p.Q79R 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-77-7141-01 19 36351245 36351245 G - KIRREL2 Frame_Shift_Del p.G241Efs*36 0.38 TCGA-77-7141-01 19 36605119 36605119 C T POLR2I Missense_Mutation p.D75N 0.05 deleterious(0.02) possibly_damaging(0.624) TCGA-77-7141-01 19 37880733 37880733 C G ZNF527 Silent p.V594V 0.20 TCGA-77-7141-01 19 37975597 37975597 A C ZNF570 Missense_Mutation p.Y358S 0.07 deleterious(0) probably_damaging(1) TCGA-77-7141-01 19 39220100 39220100 C T ACTN4 3'UTR 0.13 TCGA-77-7141-01 19 39691010 39691010 G T NCCRP1 Silent p.A191A 0.61 TCGA-77-7141-01 19 4157250 4157250 C A CREB3L3 Missense_Mutation p.P139T 0.43 deleterious(0.04) possibly_damaging(0.617) TCGA-77-7141-01 19 41903110 41903110 C G EXOSC5 Missense_Mutation p.D42H 0.06 deleterious(0) probably_damaging(1) TCGA-77-7141-01 19 42343372 42343372 G T LYPD4 5'UTR 0.35 TCGA-77-7141-01 19 42462915 42462915 A G RABAC1 Missense_Mutation p.V81A 0.20 deleterious(0) possibly_damaging(0.829) TCGA-77-7141-01 19 43576102 43576102 A G PSG2 Silent p.G238G 0.27 TCGA-77-7141-01 19 44096257 44096257 T G IRGQ Missense_Mutation p.H598P 0.27 deleterious(0.01) probably_damaging(0.994) TCGA-77-7141-01 19 46136347 46136347 C T EML2 Missense_Mutation p.G328E 0.33 deleterious(0) possibly_damaging(0.862) TCGA-77-7141-01 19 46457061 46457061 T C NOVA2 Missense_Mutation p.M125V 0.35 tolerated(1) unknown(0) TCGA-77-7141-01 19 47258794 47258794 C T FKRP Silent p.H29H 0.36 TCGA-77-7141-01 19 50957528 50957528 C T MYBPC2 Missense_Mutation p.P639L 0.68 deleterious(0.01) probably_damaging(0.979) TCGA-77-7141-01 19 51021586 51021586 C T LRRC4B Missense_Mutation p.G462R 0.15 tolerated_low_confidence(0.32) benign(0.405) TCGA-77-7141-01 19 51171649 51171649 C A SHANK1 Missense_Mutation p.G1190C 0.57 unknown(0) TCGA-77-7141-01 19 51645855 51645855 C G SIGLEC7 Missense_Mutation p.P77A 0.05 tolerated(0.07) probably_damaging(0.969) TCGA-77-7141-01 19 53644331 53644331 G C ZNF347 Missense_Mutation p.L585V 0.04 deleterious(0.01) probably_damaging(0.927) TCGA-77-7141-01 19 54261563 54261563 G C MIR1283-2 RNA 0.59 TCGA-77-7141-01 19 54308619 54308619 G C NLRP12 Missense_Mutation p.L777V 0.05 tolerated(0.06) probably_damaging(0.928) TCGA-77-7141-01 19 55144681 55144681 T C LILRB1 Silent p.H391H 0.17 TCGA-77-7141-01 19 55341720 55341720 C T KIR3DL1 Missense_Mutation p.S442F 0.06 tolerated_low_confidence(0.29) benign(0.016) TCGA-77-7141-01 19 55857677 55857677 G A SUV420H2 Missense_Mutation p.G223S 0.54 deleterious(0) benign(0.064) TCGA-77-7141-01 19 56423199 56423199 C G NLRP13 Missense_Mutation p.D662H 0.12 tolerated(0.09) possibly_damaging(0.503) TCGA-77-7141-01 19 56435963 56435963 T C NLRP13 Silent p.E150E 0.13 TCGA-77-7141-01 19 57326218 57326218 C G PEG3 Missense_Mutation p.D1198H 0.06 deleterious(0.04) possibly_damaging(0.873) TCGA-77-7141-01 19 57669704 57669704 T C DUXA Missense_Mutation p.R144G 0.07 deleterious(0) possibly_damaging(0.904) TCGA-77-7141-01 19 57869153 57869153 G C ZNF304 Missense_Mutation p.G639A 0.04 deleterious(0.03) benign(0.25) TCGA-77-7141-01 19 58234663 58234663 C G ZNF671 Missense_Mutation p.E62Q 0.04 deleterious(0) probably_damaging(1) TCGA-77-7141-01 19 58265141 58265141 A G ZNF776 Missense_Mutation p.I215V 0.20 deleterious(0.01) benign(0.004) TCGA-77-7141-01 19 855783 855783 G T ELANE Missense_Mutation p.G196C 0.53 deleterious(0) probably_damaging(1) TCGA-77-7141-01 19 9014200 9014200 G A MUC16 Silent p.F12816F 0.08 TCGA-77-7141-01 19 9070064 9070064 G T MUC16 Missense_Mutation p.N5794K 0.43 unknown(0) TCGA-77-7141-01 19 9639645 9639645 C A ZNF426 Missense_Mutation p.S359I 0.25 deleterious(0.04) benign(0.037) TCGA-77-7141-01 19 9677148 9677148 C A ZNF121 Missense_Mutation p.G214V 0.47 tolerated(0.46) possibly_damaging(0.904) TCGA-77-7141-01 19 9922394 9922394 C T FBXL12 Splice_Site p.X54_splice 0.14 TCGA-77-7141-01 19 9940679 9940679 C T UBL5 Nonsense_Mutation p.Q73* 0.06 TCGA-77-7141-01 1 115220619 115220619 T A AMPD1 Missense_Mutation p.Y412F 0.13 deleterious(0) probably_damaging(0.999) TCGA-77-7141-01 1 117660672 117660672 A C TRIM45 Missense_Mutation p.C402W 0.09 deleterious(0) probably_damaging(0.999) TCGA-77-7141-01 1 118623787 118623787 C T SPAG17 Missense_Mutation p.D716N 0.25 tolerated(0.19) benign(0.009) TCGA-77-7141-01 1 119467346 119467346 C G TBX15 Missense_Mutation p.G100R 0.11 deleterious(0) probably_damaging(1) TCGA-77-7141-01 1 119683289 119683289 T C WARS2 5'UTR 0.11 TCGA-77-7141-01 1 12056310 12056310 G T MFN2 Nonsense_Mutation p.E137* 0.33 TCGA-77-7141-01 1 12855721 12855721 G A PRAMEF1 Missense_Mutation p.R334H 0.30 tolerated(0.44) benign(0.001) TCGA-77-7141-01 1 144921973 144921973 T C PDE4DIP Silent p.Q352Q 0.07 TCGA-77-7141-01 1 149877361 149877361 C A SV2A Intron 0.18 TCGA-77-7141-01 1 154562398 154562398 G C ADAR Missense_Mutation p.L835V 0.12 tolerated(1) benign(0.001) TCGA-77-7141-01 1 155646383 155646383 G C YY1AP1 Missense_Mutation p.L232V 0.18 deleterious(0.03) possibly_damaging(0.767) TCGA-77-7141-01 1 155723141 155723141 C T GON4L Missense_Mutation p.R1899Q 0.05 tolerated_low_confidence(0.47) benign(0) TCGA-77-7141-01 1 155851086 155851086 A G SYT11 Silent p.E361E 0.44 TCGA-77-7141-01 1 156261211 156261211 C G TMEM79 Missense_Mutation p.S336C 0.10 deleterious(0) probably_damaging(0.996) TCGA-77-7141-01 1 156670337 156670337 G A CRABP2 Silent p.I121I 0.17 TCGA-77-7141-01 1 156812999 156812999 G T INSRR Missense_Mutation p.P975T 0.25 deleterious(0) probably_damaging(0.972) TCGA-77-7141-01 1 157556066 157556066 C G FCRL4 Missense_Mutation p.E343Q 0.06 deleterious(0.03) possibly_damaging(0.611) TCGA-77-7141-01 1 157718671 157718671 C A FCRL2 Missense_Mutation p.V463F 0.32 deleterious(0.05) possibly_damaging(0.45) TCGA-77-7141-01 1 158299778 158299778 G T CD1B Missense_Mutation p.S157R 0.07 tolerated(0.2) benign(0.002) TCGA-77-7141-01 1 158368844 158368844 T C OR10T2 Missense_Mutation p.N138S 0.12 tolerated(0.87) benign(0.001) TCGA-77-7141-01 1 158369089 158369089 G A OR10T2 Silent p.L56L 0.29 TCGA-77-7141-01 1 158622301 158622301 C G SPTA1 Missense_Mutation p.D1111H 0.31 deleterious(0.01) probably_damaging(0.977) TCGA-77-7141-01 1 158647527 158647527 G A SPTA1 Missense_Mutation p.H304Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-77-7141-01 1 160100292 160100292 G T ATP1A2 Nonsense_Mutation p.E578* 0.46 TCGA-77-7141-01 1 160459994 160459994 C G SLAMF6 Missense_Mutation p.G264R 0.07 tolerated(0.34) possibly_damaging(0.571) TCGA-77-7141-01 1 16202878 16202878 G A SPEN Missense_Mutation p.A196T 0.35 benign(0.242) TCGA-77-7141-01 1 167095796 167095796 C T DUSP27 Silent p.T476T 0.47 TCGA-77-7141-01 1 167847795 167847795 T A ADCY10 Missense_Mutation p.Y432F 0.07 tolerated(0.09) benign(0.443) TCGA-77-7141-01 1 171247922 171247922 A G FMO1 Missense_Mutation p.D180G 0.07 tolerated(0.14) possibly_damaging(0.639) TCGA-77-7141-01 1 171511074 171511074 C G PRRC2C Missense_Mutation p.S1488C 0.05 unknown(0) TCGA-77-7141-01 1 173722433 173722433 G C KLHL20 Missense_Mutation p.D280H 0.10 tolerated(0.33) probably_damaging(0.999) TCGA-77-7141-01 1 175292611 175292611 C T TNR Missense_Mutation p.G1320D 0.21 deleterious(0) probably_damaging(1) TCGA-77-7141-01 1 175372573 175372573 C T TNR Missense_Mutation p.G227R 0.33 deleterious(0) probably_damaging(0.999) TCGA-77-7141-01 1 176863818 176863818 G A ASTN1 Silent p.P940P 0.05 TCGA-77-7141-01 1 178822898 178822898 G C ANGPTL1 Missense_Mutation p.A283G 0.11 deleterious(0.01) probably_damaging(0.994) TCGA-77-7141-01 1 179562703 179562703 G C TDRD5 Missense_Mutation p.G114A 0.29 tolerated(0.25) benign(0.041) TCGA-77-7141-01 1 181741251 181741251 G A CACNA1E Missense_Mutation p.E1675K 0.05 deleterious(0.05) possibly_damaging(0.621) TCGA-77-7141-01 1 183519027 183519027 T G SMG7 Silent p.T988T 0.06 TCGA-77-7141-01 1 186114939 186114939 G A HMCN1 Missense_Mutation p.G4831E 0.09 probably_damaging(0.999) TCGA-77-7141-01 1 186147578 186147578 C G HMCN1 Missense_Mutation p.P5325R 0.09 probably_damaging(0.992) TCGA-77-7141-01 1 190234119 190234119 G A BRINP3 Missense_Mutation p.S165F 0.07 tolerated(0.08) benign(0) TCGA-77-7141-01 1 193028602 193028602 C G UCHL5 5'UTR 0.15 TCGA-77-7141-01 1 19491747 19491747 C T UBR4 Silent p.Q1436Q 0.10 TCGA-77-7141-01 1 196887447 196887447 T A CFHR4 Missense_Mutation p.C549S 0.44 deleterious(0) probably_damaging(0.922) TCGA-77-7141-01 1 196918756 196918756 G C CFHR2 Missense_Mutation p.W77S 0.44 deleterious(0) probably_damaging(0.999) TCGA-77-7141-01 1 197297700 197297700 T C CRB1 Silent p.P73P 0.25 TCGA-77-7141-01 1 205027053 205027053 G C CNTN2 Missense_Mutation p.W25C 0.11 tolerated(0.12) benign(0.293) TCGA-77-7141-01 1 206619469 206619469 C T SRGAP2 Silent p.A555A 0.29 TCGA-77-7141-01 1 210001372 210001372 G A DIEXF 5'UTR 0.24 TCGA-77-7141-01 1 216107988 216107988 C A USH2A Missense_Mutation p.D2424Y 0.19 possibly_damaging(0.466) TCGA-77-7141-01 1 217955665 217955665 G T SPATA17 Splice_Site p.X291_splice 0.39 TCGA-77-7141-01 1 220445707 220445707 C A RAB3GAP2 5'UTR 0.36 TCGA-77-7141-01 1 223177589 223177589 G T DISP1 Missense_Mutation p.W950C 0.47 deleterious(0) probably_damaging(0.996) TCGA-77-7141-01 1 227174390 227174390 G A ADCK3 Missense_Mutation p.M632I 0.08 tolerated(0.07) benign(0.023) TCGA-77-7141-01 1 228612919 228612919 C A HIST3H3 Silent p.V36V 0.08 TCGA-77-7141-01 1 22920176 22920176 C T EPHA8 Missense_Mutation p.P534S 0.30 tolerated(0.34) benign(0.08) TCGA-77-7141-01 1 22974290 22974290 G A C1QC 3'UTR 0.29 TCGA-77-7141-01 1 23743803 23743803 C G TCEA3 Missense_Mutation p.D107H 0.08 tolerated(0.08) benign(0.002) TCGA-77-7141-01 1 237777583 237777583 C A RYR2 Missense_Mutation p.L1719I 0.34 probably_damaging(0.934) TCGA-77-7141-01 1 240071132 240071132 C A CHRM3 Silent p.T127T 0.39 TCGA-77-7141-01 1 240371081 240371081 C A FMN2 Missense_Mutation p.P990H 0.31 unknown(0) TCGA-77-7141-01 1 242287878 242287878 G C PLD5 Missense_Mutation p.F275L 0.06 tolerated(0.61) benign(0.003) TCGA-77-7141-01 1 242511421 242511421 G T PLD5 Missense_Mutation p.Q105K 0.42 deleterious(0.04) benign(0.052) TCGA-77-7141-01 1 247202114 247202114 T C ZNF670 Silent p.L63L 0.07 TCGA-77-7141-01 1 247654532 247654532 T G OR2W5 RNA 0.25 TCGA-77-7141-01 1 247752068 247752068 C T OR2G2 Missense_Mutation p.T136I 0.17 tolerated(0.05) benign(0.022) TCGA-77-7141-01 1 247902030 247902030 G A OR14K1 Silent p.L38L 0.28 TCGA-77-7141-01 1 248084445 248084445 C G OR2T8 Silent p.L42L 0.12 TCGA-77-7141-01 1 248637578 248637578 G A OR2T3 Missense_Mutation p.M309I 0.04 tolerated(0.2) benign(0.004) TCGA-77-7141-01 1 34554584 34554584 C A CSMD2 Missense_Mutation p.R93L 0.30 tolerated(0.16) possibly_damaging(0.647) TCGA-77-7141-01 1 34666590 34666590 G C C1orf94 Silent p.P409P 0.18 TCGA-77-7141-01 1 36557524 36557524 C T ADPRHL2 Missense_Mutation p.S177L 0.17 deleterious(0.05) possibly_damaging(0.744) TCGA-77-7141-01 1 37325463 37325463 C A GRIK3 Silent p.L314L 0.28 TCGA-77-7141-01 1 38078273 38078273 G T RSPO1 3'UTR 0.32 TCGA-77-7141-01 1 38227441 38227441 C G EPHA10 Silent p.T162T 0.34 TCGA-77-7141-01 1 39802206 39802206 G C MACF1 Intron 0.05 TCGA-77-7141-01 1 39907678 39907678 G T MACF1 Missense_Mutation p.V4184F 0.28 probably_damaging(0.994) TCGA-77-7141-01 1 44804970 44804970 A G ERI3 Missense_Mutation p.M79T 0.24 deleterious_low_confidence(0.01) benign(0.031) TCGA-77-7141-01 1 6173053 6173053 C A CHD5 Missense_Mutation p.V1640L 0.36 tolerated_low_confidence(0.4) benign(0.001) TCGA-77-7141-01 1 6525534 6525534 C G TNFRSF25 Missense_Mutation p.K42N 0.36 deleterious(0.02) possibly_damaging(0.516) TCGA-77-7141-01 1 6635401 6635401 C A TAS1R1 Silent p.L403L 0.10 TCGA-77-7141-01 1 70652962 70652962 C T LRRC40 Silent p.Q131Q 0.18 TCGA-77-7141-01 1 77987556 77987556 C A AK5 Silent p.L452L 0.32 TCGA-77-7141-01 1 78511950 78511950 G C GIPC2 Missense_Mutation p.E58Q 0.23 tolerated(0.06) benign(0.117) TCGA-77-7141-01 1 79470755 79470755 C G ELTD1 Missense_Mutation p.D58H 0.30 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-77-7141-01 1 8416160 8416160 C T RERE Missense_Mutation p.G1496S 0.26 unknown(0) TCGA-77-7141-01 1 9117535 9117535 C A SLC2A5 Missense_Mutation p.V89F 0.19 deleterious(0) probably_damaging(0.994) TCGA-77-7141-01 1 92752076 92752076 G A GLMN Missense_Mutation p.P236S 0.30 deleterious(0.01) possibly_damaging(0.453) TCGA-77-7141-01 1 92948493 92948493 C - GFI1 Frame_Shift_Del p.E76Kfs*122 0.27 TCGA-77-7141-01 1 93621961 93621961 C G TMED5 Missense_Mutation p.E123Q 0.11 deleterious(0) probably_damaging(0.995) TCGA-77-7141-01 1 93724407 93724407 G T CCDC18 Nonsense_Mutation p.E1270* 0.24 TCGA-77-7141-01 20 10603872 10603872 G C SLX4IP Missense_Mutation p.E358Q 0.05 deleterious(0.01) possibly_damaging(0.714) TCGA-77-7141-01 20 11904016 11904016 C G BTBD3 Missense_Mutation p.A424G 0.22 deleterious(0) possibly_damaging(0.491) TCGA-77-7141-01 20 1285777 1285777 G C SNPH Missense_Mutation p.Q188H 0.20 tolerated(0.35) probably_damaging(0.997) TCGA-77-7141-01 20 13763323 13763323 T G ESF1 Missense_Mutation p.K155T 0.13 tolerated_low_confidence(0.13) benign(0.118) TCGA-77-7141-01 20 16712882 16712882 G A SNRPB2 Missense_Mutation p.M46I 0.07 tolerated(0.2) benign(0.012) TCGA-77-7141-01 20 18505143 18505143 C G SEC23B Missense_Mutation p.Q145E 0.10 tolerated(0.64) benign(0.14) TCGA-77-7141-01 20 21695343 21695343 C G PAX1 Missense_Mutation p.R503G 0.17 deleterious_low_confidence(0) possibly_damaging(0.726) TCGA-77-7141-01 20 2638601 2638601 G C NOP56 Missense_Mutation p.K482N 0.08 deleterious(0.03) benign(0.403) TCGA-77-7141-01 20 2796431 2796431 C A C20orf141 3'UTR 0.03 TCGA-77-7141-01 20 29960871 29960871 G C DEFB118 Silent p.T90T 0.08 TCGA-77-7141-01 20 3208426 3208426 C G SLC4A11 3'UTR 0.10 TCGA-77-7141-01 20 45607257 45607257 G T EYA2 Intron 0.28 TCGA-77-7141-01 20 45865136 45865136 G A ZMYND8 Silent p.N884N 0.10 TCGA-77-7141-01 20 45875192 45875192 G A ZMYND8 Missense_Mutation p.S615L 0.11 deleterious_low_confidence(0) possibly_damaging(0.611) TCGA-77-7141-01 20 5283078 5283078 C G PROKR2 Missense_Mutation p.V255L 0.07 tolerated(0.14) benign(0.03) TCGA-77-7141-01 20 55918473 55918473 G A SPO11 Missense_Mutation p.R383K 0.07 tolerated(0.19) benign(0.002) TCGA-77-7141-01 20 58448963 58448963 T A SYCP2 Missense_Mutation p.N1168I 0.28 deleterious(0.02) possibly_damaging(0.7) TCGA-77-7141-01 20 61525421 61525421 C T DIDO1 Missense_Mutation p.D900N 0.11 benign(0.02) TCGA-77-7141-01 20 62197168 62197168 C G HELZ2 Missense_Mutation p.E1003Q 0.12 tolerated(0.71) benign(0.003) TCGA-77-7141-01 20 8708027 8708027 G A PLCB1 Missense_Mutation p.V584M 0.45 tolerated(0.36) possibly_damaging(0.744) TCGA-77-7141-01 20 9440354 9440354 G A PLCB4 Missense_Mutation p.E1037K 0.07 tolerated(0.09) benign(0.318) TCGA-77-7141-01 21 15538694 15538694 G C LIPI Nonsense_Mutation p.S262* 0.12 TCGA-77-7141-01 21 30329664 30329664 A C LTN1 Missense_Mutation p.L1007R 0.15 deleterious(0) probably_damaging(1) TCGA-77-7141-01 21 31710007 31710007 A C KRTAP27-1 5'UTR 0.42 TCGA-77-7141-01 21 32253307 32253307 C A KRTAP11-1 3'UTR 0.10 TCGA-77-7141-01 21 41427683 41427683 C G DSCAM Missense_Mutation p.L1668F 0.24 deleterious(0.04) probably_damaging(0.987) TCGA-77-7141-01 21 41741069 41741069 G T DSCAM Silent p.T204T 0.19 TCGA-77-7141-01 21 42647383 42647383 G T BACE2 Missense_Mutation p.L463F 0.12 tolerated(0.31) benign(0.005) TCGA-77-7141-01 21 46117352 46117352 C A KRTAP10-12 Missense_Mutation p.S79Y 0.21 deleterious(0.01) unknown(0) TCGA-77-7141-01 22 17073253 17073253 A T CCT8L2 Missense_Mutation p.M63K 0.35 tolerated(0.66) benign(0.005) TCGA-77-7141-01 22 17280833 17280833 T A XKR3 Silent p.T139T 0.39 TCGA-77-7141-01 22 19127155 19127155 C A DGCR14 Missense_Mutation p.A220S 0.17 tolerated(0.39) probably_damaging(0.999) TCGA-77-7141-01 22 19318880 19318880 G T HIRA 3'UTR 0.39 TCGA-77-7141-01 22 21159290 21159290 G A PI4KA Silent p.L444L 0.06 TCGA-77-7141-01 22 23438367 23438367 G T GNAZ Missense_Mutation p.R162L 0.41 deleterious(0) probably_damaging(0.987) TCGA-77-7141-01 22 29954869 29954869 G C NIPSNAP1 Silent p.V260V 0.15 TCGA-77-7141-01 22 30730673 30730673 G A SF3A1 Silent p.I764I 0.19 TCGA-77-7141-01 22 32756321 32756321 C G RFPL3 Missense_Mutation p.I152M 0.05 tolerated(0.13) probably_damaging(0.944) TCGA-77-7141-01 22 32808213 32808213 C G RTCB 5'UTR 0.12 TCGA-77-7141-01 22 37319302 37319302 G C CSF2RB Missense_Mutation p.Q31H 0.12 deleterious(0) benign(0.343) TCGA-77-7141-01 22 37769565 37769565 G A ELFN2 Silent p.L670L 0.73 TCGA-77-7141-01 22 37966285 37966285 G C LGALS2 Missense_Mutation p.F128L 0.09 tolerated(0.07) benign(0.196) TCGA-77-7141-01 22 39621794 39621794 C A PDGFB Missense_Mutation p.K220N 0.36 deleterious(0) probably_damaging(0.997) TCGA-77-7141-01 22 42962336 42962336 C T SERHL2 Missense_Mutation p.L214F 0.32 tolerated(0.06) possibly_damaging(0.835) TCGA-77-7141-01 22 43603587 43603587 G T SCUBE1 Missense_Mutation p.R923S 0.20 deleterious(0) probably_damaging(0.998) TCGA-77-7141-01 22 45204259 45204259 C T ARHGAP8 Silent p.N202N 0.11 TCGA-77-7141-01 22 46763677 46763677 G A CELSR1 Silent p.N2676N 0.34 TCGA-77-7141-01 2 102626100 102626100 G A IL1R2 Silent p.L48L 0.07 TCGA-77-7141-01 2 109382919 109382919 G T RANBP2 Missense_Mutation p.G1975V 0.40 deleterious(0) probably_damaging(0.991) TCGA-77-7141-01 2 112940374 112940374 A G FBLN7 Missense_Mutation p.N226S 0.26 tolerated(0.07) benign(0.311) TCGA-77-7141-01 2 11928512 11928512 G C LPIN1 Splice_Site p.X597_splice 0.05 TCGA-77-7141-01 2 122488663 122488663 C A NIFK Nonsense_Mutation p.E124* 0.47 TCGA-77-7141-01 2 130832354 130832354 G T POTEF Silent p.G897G 0.24 TCGA-77-7141-01 2 133636438 133636438 C T NCKAP5 Missense_Mutation p.E211K 0.23 deleterious(0) probably_damaging(0.93) TCGA-77-7141-01 2 136399255 136399255 G T R3HDM1 Missense_Mutation p.G457C 0.38 tolerated(0.06) probably_damaging(0.971) TCGA-77-7141-01 2 136566313 136566313 C T LCT Missense_Mutation p.D1202N 0.20 deleterious(0) probably_damaging(1) TCGA-77-7141-01 2 138378230 138378230 G A THSD7B Missense_Mutation p.V1248M 0.47 deleterious(0.02) unknown(0) TCGA-77-7141-01 2 141986796 141986796 C G LRP1B Missense_Mutation p.G269A 0.47 benign(0) TCGA-77-7141-01 2 152320254 152320254 T G RIF1 Missense_Mutation p.I1407R 0.07 tolerated(0.09) benign(0.418) TCGA-77-7141-01 2 152487839 152487839 G A NEB Nonsense_Mutation p.Q3146* 0.16 TCGA-77-7141-01 2 152487840 152487840 G A NEB Silent p.L3145L 0.16 TCGA-77-7141-01 2 152698548 152698548 G A CACNB4 Silent p.L391L 0.10 TCGA-77-7141-01 2 153484828 153484828 A C FMNL2 Silent p.T727T 0.50 TCGA-77-7141-01 2 15601865 15601865 G A NBAS Silent p.F716F 0.26 TCGA-77-7141-01 2 160697297 160697297 G A LY75-CD302 Silent p.L1150L 0.07 TCGA-77-7141-01 2 165353766 165353766 G A GRB14 Missense_Mutation p.H417Y 0.13 tolerated(1) probably_damaging(0.925) TCGA-77-7141-01 2 171225800 171225800 G T MYO3B Missense_Mutation p.G295V 0.22 tolerated(0.05) benign(0.002) TCGA-77-7141-01 2 171702216 171702216 A T GAD1 Missense_Mutation p.S290C 0.23 tolerated(0.27) probably_damaging(1) TCGA-77-7141-01 2 179425321 179425321 G T TTN Missense_Mutation p.T28513N 0.58 TCGA-77-7141-01 2 179427171 179427171 A T TTN Silent p.T27896T 0.22 TCGA-77-7141-01 2 179434446 179434446 C T TTN Silent p.L25471L 0.10 TCGA-77-7141-01 2 179446516 179446516 G A TTN Missense_Mutation p.P22160L 0.31 TCGA-77-7141-01 2 179452435 179452435 G T TTN Silent p.R21201R 0.63 TCGA-77-7141-01 2 179457530 179457530 C A TTN Silent p.P19772P 0.18 TCGA-77-7141-01 2 179472739 179472739 G T TTN Missense_Mutation p.P17592H 0.24 TCGA-77-7141-01 2 179585840 179585840 G T TTN Missense_Mutation p.P7636T 0.41 TCGA-77-7141-01 2 179604464 179604464 G T TTN Missense_Mutation p.A4499D 0.51 TCGA-77-7141-01 2 191334518 191334518 C T MFSD6 Missense_Mutation p.R523C 0.10 deleterious(0) probably_damaging(0.971) TCGA-77-7141-01 2 196741339 196741339 G C DNAH7 Missense_Mutation p.Q2016E 0.06 deleterious(0) probably_damaging(0.947) TCGA-77-7141-01 2 201726187 201726187 T C CLK1 Missense_Mutation p.H97R 0.27 tolerated_low_confidence(0.05) benign(0.003) TCGA-77-7141-01 2 202131353 202131353 C G CASP8 Silent p.L107L 0.12 TCGA-77-7141-01 2 202248847 202248847 G C TRAK2 Missense_Mutation p.Q686E 0.07 tolerated(0.09) possibly_damaging(0.793) TCGA-77-7141-01 2 207631879 207631879 C G FASTKD2 Missense_Mutation p.I154M 0.13 tolerated(0.09) benign(0.02) TCGA-77-7141-01 2 209219321 209219321 A T PIKFYVE Nonsense_Mutation p.K2045* 0.23 TCGA-77-7141-01 2 210570388 210570388 G C MAP2 Missense_Mutation p.D1557H 0.04 deleterious(0) probably_damaging(0.98) TCGA-77-7141-01 2 211525285 211525285 T A CPS1 Missense_Mutation p.V1284E 0.26 deleterious(0) probably_damaging(0.986) TCGA-77-7141-01 2 212248542 212248542 T A ERBB4 Missense_Mutation p.Y1242F 0.26 tolerated(0.05) benign(0.009) TCGA-77-7141-01 2 21231597 21231597 C A APOB Nonsense_Mutation p.E2715* 0.05 TCGA-77-7141-01 2 228116064 228116064 G A COL4A3 Missense_Mutation p.A208T 0.21 benign(0.376) TCGA-77-7141-01 2 233244997 233244997 G A ALPP Silent p.K253K 0.30 TCGA-77-7141-01 2 233407713 233407713 C G CHRNG Silent p.L242L 0.13 TCGA-77-7141-01 2 234372827 234372827 G A DGKD Silent p.Q1068Q 0.10 TCGA-77-7141-01 2 234839332 234839332 A C TRPM8 Missense_Mutation p.Q46P 0.16 tolerated(1) benign(0.261) TCGA-77-7141-01 2 242097269 242097269 G C PPP1R7 Missense_Mutation p.D77H 0.18 deleterious(0) possibly_damaging(0.614) TCGA-77-7141-01 2 27324371 27324371 C G CGREF1 Missense_Mutation p.G243A 0.30 tolerated(0.25) probably_damaging(0.91) TCGA-77-7141-01 2 27592024 27592024 C G EIF2B4 Missense_Mutation p.E109D 0.06 tolerated(0.07) possibly_damaging(0.833) TCGA-77-7141-01 2 31467194 31467194 A T EHD3 Silent p.T94T 0.26 TCGA-77-7141-01 2 36805995 36805995 G A FEZ2 Silent p.L216L 0.25 TCGA-77-7141-01 2 39233623 39233623 C T SOS1 Silent p.L907L 0.49 TCGA-77-7141-01 2 42990081 42990081 G C OXER1 Silent p.V413V 0.09 TCGA-77-7141-01 2 44101091 44101091 C G ABCG8 Missense_Mutation p.I459M 0.07 tolerated(0.11) possibly_damaging(0.824) TCGA-77-7141-01 2 44502965 44502965 G T SLC3A1 Silent p.V97V 0.28 TCGA-77-7141-01 2 45789845 45789845 G C SRBD1 Silent p.V452V 0.10 TCGA-77-7141-01 2 50149039 50149039 A G NRXN1 3'UTR 0.16 TCGA-77-7141-01 2 51254977 51254977 C A NRXN1 Missense_Mutation p.R145S 0.35 tolerated(0.66) benign(0.3) TCGA-77-7141-01 2 55894210 55894210 C A PNPT1 Missense_Mutation p.L364F 0.10 tolerated(0.21) benign(0.008) TCGA-77-7141-01 2 61456762 61456762 G A USP34 Nonsense_Mutation p.Q2374* 0.03 TCGA-77-7141-01 2 68352437 68352437 G A WDR92 3'Flank 0.14 TCGA-77-7141-01 2 71655693 71655693 G C ZNF638 Missense_Mutation p.K1854N 0.05 deleterious(0.02) possibly_damaging(0.791) TCGA-77-7141-01 2 71909760 71909760 C A DYSF Missense_Mutation p.L2092I 0.56 tolerated(0.09) benign(0.272) TCGA-77-7141-01 2 73477467 73477467 G C CCT7 Missense_Mutation p.K368N 0.30 tolerated(0.09) benign(0.102) TCGA-77-7141-01 2 73680581 73680581 G T ALMS1 Silent p.T2308T 0.39 TCGA-77-7141-01 2 88895005 88895005 G C EIF2AK3 Silent p.L205L 0.06 TCGA-77-7141-01 2 89246886 89246886 A T IGKV1-5 Missense_Mutation p.L95H 0.14 deleterious(0) probably_damaging(0.979) TCGA-77-7141-01 2 90139450 90139450 C G IGKV1D-16 Missense_Mutation p.S74C 0.17 deleterious(0) possibly_damaging(0.83) TCGA-77-7141-01 2 90139451 90139451 C A IGKV1D-16 Silent p.S74S 0.16 TCGA-77-7141-01 2 90199094 90199094 C A IGKV1D-12 Missense_Mutation p.S85R 0.45 deleterious(0.05) possibly_damaging(0.47) TCGA-77-7141-01 2 98375500 98375500 G A TMEM131 Silent p.L1741L 0.15 TCGA-77-7141-01 2 99443508 99443508 G C KIAA1211L Missense_Mutation p.S222C 0.04 deleterious(0) possibly_damaging(0.843) TCGA-77-7141-01 2 99861776 99861776 A T LYG2 Silent p.S110S 0.24 TCGA-77-7141-01 2 99980749 99980749 G C EIF5B Missense_Mutation p.E385Q 0.17 benign(0.403) TCGA-77-7141-01 3 10081422 10081422 C G FANCD2 Missense_Mutation p.I196M 0.21 tolerated(0.14) benign(0.127) TCGA-77-7141-01 3 102183047 102183047 C A ZPLD1 Missense_Mutation p.T254N 0.24 deleterious(0) probably_damaging(0.998) TCGA-77-7141-01 3 109049596 109049596 C A DPPA4 Nonsense_Mutation p.E152* 0.25 TCGA-77-7141-01 3 11070485 11070485 G T SLC6A1 Missense_Mutation p.W381C 0.38 deleterious(0) benign(0.289) TCGA-77-7141-01 3 111918227 111918227 G C SLC9C1 Missense_Mutation p.L822V 0.10 tolerated(1) benign(0.004) TCGA-77-7141-01 3 112991406 112991406 G T BOC Missense_Mutation p.G273C 0.23 tolerated(0.17) possibly_damaging(0.867) TCGA-77-7141-01 3 11301005 11301005 A T HRH1 Silent p.S94S 0.63 TCGA-77-7141-01 3 113374841 113374841 A T KIAA2018 Silent p.P1896P 0.27 TCGA-77-7141-01 3 113375106 113375106 G C KIAA2018 Nonsense_Mutation p.S1808* 0.05 TCGA-77-7141-01 3 113761669 113761669 A C KIAA1407 Nonsense_Mutation p.L99* 0.11 TCGA-77-7141-01 3 1189728 1189728 A C CNTN6 Silent p.P12P 0.12 TCGA-77-7141-01 3 119133761 119133761 G T ARHGAP31 Missense_Mutation p.E995D 0.32 tolerated(0.14) benign(0.008) TCGA-77-7141-01 3 121100343 121100343 C G STXBP5L Missense_Mutation p.Q875E 0.05 tolerated(0.48) benign(0.001) TCGA-77-7141-01 3 125731504 125731504 C T SLC41A3 Silent p.Q353Q 0.04 TCGA-77-7141-01 3 127831784 127831784 G T RUVBL1 Nonsense_Mutation p.S103* 0.06 TCGA-77-7141-01 3 133647638 133647638 C T C3orf36 Missense_Mutation p.E4K 0.07 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-77-7141-01 3 134278113 134278113 C T CEP63 Silent p.L599L 0.05 TCGA-77-7141-01 3 135721820 135721820 G A PPP2R3A Missense_Mutation p.E494K 0.05 tolerated_low_confidence(0.61) benign(0.004) TCGA-77-7141-01 3 142051378 142051378 T A XRN1 Intron 0.17 TCGA-77-7141-01 3 145878682 145878682 G C PLOD2 Missense_Mutation p.S32W 0.14 deleterious(0.02) possibly_damaging(0.515) TCGA-77-7141-01 3 151012979 151012979 C G GPR87 Missense_Mutation p.E19Q 0.04 tolerated(0.44) benign(0.009) TCGA-77-7141-01 3 155200553 155200553 C G PLCH1 Missense_Mutation p.V1096L 0.19 tolerated_low_confidence(0.41) benign(0.001) TCGA-77-7141-01 3 157131675 157131675 C G VEPH1 Missense_Mutation p.D301H 0.08 deleterious(0.03) possibly_damaging(0.903) TCGA-77-7141-01 3 164714422 164714422 A G SI Silent p.C1531C 0.25 TCGA-77-7141-01 3 164754251 164754251 A G SI Missense_Mutation p.L814P 0.10 deleterious(0) probably_damaging(0.992) TCGA-77-7141-01 3 164783214 164783214 G T SI Missense_Mutation p.D214E 0.49 deleterious(0.01) benign(0.199) TCGA-77-7141-01 3 167413509 167413509 C G PDCD10 Missense_Mutation p.E90D 0.04 tolerated(0.33) benign(0.004) TCGA-77-7141-01 3 170201150 170201150 C A SLC7A14 Silent p.P356P 0.13 TCGA-77-7141-01 3 173525476 173525476 G A NLGN1 Missense_Mutation p.R167Q 0.22 tolerated(0.05) probably_damaging(0.947) TCGA-77-7141-01 3 173997236 173997236 C G NLGN1 Missense_Mutation p.P482R 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-77-7141-01 3 178785494 178785494 G A ZMAT3 Missense_Mutation p.S16L 0.10 tolerated_low_confidence(0.07) benign(0.006) TCGA-77-7141-01 3 180667072 180667072 A G FXR1 Missense_Mutation p.S191G 0.14 deleterious(0.03) benign(0.338) TCGA-77-7141-01 3 180705826 180705826 T A DNAJC19 Missense_Mutation p.Q38H 0.05 deleterious(0.01) benign(0.241) TCGA-77-7141-01 3 182988310 182988310 G A B3GNT5 Missense_Mutation p.E242K 0.44 tolerated(0.08) benign(0.392) TCGA-77-7141-01 3 185335316 185335316 G A SENP2 Missense_Mutation p.E387K 0.11 deleterious(0) benign(0.288) TCGA-77-7141-01 3 186504618 186504618 G T EIF4A2 Intron 0.11 TCGA-77-7141-01 3 195245901 195245901 G C PPP1R2 Nonsense_Mutation p.S162* 0.03 TCGA-77-7141-01 3 195515515 195515515 A G MUC4 Missense_Mutation p.V979A 0.11 unknown(0) TCGA-77-7141-01 3 195517151 195517151 G A MUC4 Silent p.L434L 0.03 TCGA-77-7141-01 3 195938066 195938066 A G ZDHHC19 Missense_Mutation p.F41L 0.37 tolerated(0.71) benign(0.003) TCGA-77-7141-01 3 196612298 196612298 C T SENP5 Silent p.F82F 0.12 TCGA-77-7141-01 3 196731041 196731041 G C MFI2 Intron 0.11 TCGA-77-7141-01 3 197239125 197239125 C T BDH1 Missense_Mutation p.E225K 0.06 deleterious(0.01) possibly_damaging(0.9) TCGA-77-7141-01 3 197428705 197428705 C G KIAA0226 Missense_Mutation p.V201L 0.07 tolerated(0.85) benign(0.008) TCGA-77-7141-01 3 33614660 33614660 C T CLASP2 Missense_Mutation p.E890K 0.64 deleterious(0) probably_damaging(0.998) TCGA-77-7141-01 3 41265526 41265526 A G CTNNB1 5'UTR 0.08 TCGA-77-7141-01 3 44598483 44598483 G C ZKSCAN7 5'UTR 0.11 TCGA-77-7141-01 3 47162221 47162221 C T SETD2 Missense_Mutation p.G1302D 0.19 tolerated(0.24) benign(0.082) TCGA-77-7141-01 3 49064299 49064299 C A IMPDH2 Nonsense_Mutation p.E214* 0.17 TCGA-77-7141-01 3 52514293 52514293 C G NISCH Missense_Mutation p.P504A 0.40 tolerated(0.09) benign(0.348) TCGA-77-7141-01 3 53321527 53321527 C G DCP1A 3'UTR 0.15 TCGA-77-7141-01 3 53321615 53321615 C G DCP1A Missense_Mutation p.D580H 0.16 deleterious(0.01) probably_damaging(0.924) TCGA-77-7141-01 3 53898772 53898772 G A IL17RB Splice_Site p.X316_splice 0.09 TCGA-77-7141-01 3 62267241 62267241 G A PTPRG Missense_Mutation p.E1257K 0.16 deleterious(0.03) benign(0.158) TCGA-77-7141-01 3 73433517 73433517 C T PDZRN3 Missense_Mutation p.D734N 0.63 deleterious(0.03) benign(0.234) TCGA-77-7141-01 3 73434034 73434034 C A PDZRN3 Missense_Mutation p.L561F 0.69 deleterious(0.02) possibly_damaging(0.905) TCGA-77-7141-01 3 78987765 78987765 G A ROBO1 Missense_Mutation p.S162L 0.21 deleterious(0.05) probably_damaging(0.927) TCGA-77-7141-01 3 87017977 87017977 C T VGLL3 Missense_Mutation p.A234T 0.35 tolerated(0.68) benign(0.021) TCGA-77-7141-01 3 98189225 98189225 G C OR5K1 Missense_Mutation p.D269H 0.54 deleterious(0.02) possibly_damaging(0.829) TCGA-77-7141-01 3 9859380 9859380 G A TTLL3 Missense_Mutation p.A266T 0.13 deleterious(0.02) possibly_damaging(0.69) TCGA-77-7141-01 4 100829970 100829970 T C DNAJB14 Missense_Mutation p.N179D 0.10 tolerated(0.13) benign(0.033) TCGA-77-7141-01 4 114251487 114251487 C T ANK2 Missense_Mutation p.R996W 0.17 probably_damaging(0.999) TCGA-77-7141-01 4 121957565 121957565 G C NDNF Missense_Mutation p.Q521E 0.12 tolerated(0.16) benign(0.004) TCGA-77-7141-01 4 123855731 123855731 A G SPATA5 Missense_Mutation p.T329A 0.90 tolerated(0.3) benign(0.006) TCGA-77-7141-01 4 147560402 147560402 C G POU4F2 Missense_Mutation p.S37W 0.21 deleterious_low_confidence(0) unknown(0) TCGA-77-7141-01 4 155287448 155287448 T C DCHS2 Missense_Mutation p.D203G 0.08 deleterious(0) probably_damaging(0.996) TCGA-77-7141-01 4 185320141 185320141 C A IRF2 Nonsense_Mutation p.E208* 0.63 TCGA-77-7141-01 4 187628164 187628164 G T FAT1 Missense_Mutation p.L940I 0.06 possibly_damaging(0.679) TCGA-77-7141-01 4 2948177 2948177 C G NOP14 Missense_Mutation p.E533Q 0.18 tolerated(0.06) probably_damaging(0.982) TCGA-77-7141-01 4 37962503 37962503 G C PTTG2 Missense_Mutation p.D150H 0.10 deleterious(0.01) possibly_damaging(0.891) TCGA-77-7141-01 4 47655633 47655633 G C CORIN Missense_Mutation p.L594V 0.18 tolerated(0.15) benign(0.443) TCGA-77-7141-01 4 57179417 57179417 A G KIAA1211 Missense_Mutation p.I137V 0.71 deleterious(0) probably_damaging(0.995) TCGA-77-7141-01 4 66467731 66467731 C A EPHA5 Missense_Mutation p.D180Y 0.51 deleterious(0) probably_damaging(0.999) TCGA-77-7141-01 4 77300447 77300447 T C CCDC158 Missense_Mutation p.D342G 0.50 deleterious(0.02) probably_damaging(0.994) TCGA-77-7141-01 4 79238580 79238580 C A FRAS1 Nonsense_Mutation p.C626* 0.16 TCGA-77-7141-01 4 82362035 82362035 G A RASGEF1B Missense_Mutation p.R353C 0.10 deleterious(0) possibly_damaging(0.832) TCGA-77-7141-01 4 949228 949228 C G TMEM175 Silent p.P221P 0.11 TCGA-77-7141-01 5 115249151 115249151 C A AP3S1 Silent p.I182I 0.26 TCGA-77-7141-01 5 118456747 118456747 G T DMXL1 Missense_Mutation p.D339Y 0.10 deleterious(0.02) possibly_damaging(0.571) TCGA-77-7141-01 5 118480267 118480267 G C DMXL1 Missense_Mutation p.E835Q 0.33 deleterious(0.03) possibly_damaging(0.861) TCGA-77-7141-01 5 118480307 118480307 G C DMXL1 Missense_Mutation p.G848A 0.29 tolerated(0.39) benign(0.001) TCGA-77-7141-01 5 135692662 135692662 C A TRPC7 Silent p.T138T 0.30 TCGA-77-7141-01 5 137088900 137088900 T C HNRNPA0 Missense_Mutation p.N286D 0.35 tolerated(0.36) unknown(0) TCGA-77-7141-01 5 137904641 137904641 C T HSPA9 Missense_Mutation p.V170M 0.23 deleterious_low_confidence(0) probably_damaging(0.945) TCGA-77-7141-01 5 139931579 139931579 A G SRA1 Silent p.R126R 0.22 TCGA-77-7141-01 5 140051221 140051221 C A DND1 Missense_Mutation p.G240V 0.44 deleterious(0.05) benign(0.002) TCGA-77-7141-01 5 140167399 140167399 G T PCDHA1 Silent p.V508V 0.14 TCGA-77-7141-01 5 140167785 140167785 T C PCDHA1 Missense_Mutation p.L637P 0.18 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-77-7141-01 5 140188668 140188668 C T PCDHA4 Silent p.S632S 0.24 TCGA-77-7141-01 5 140531853 140531853 C G PCDHB6 Missense_Mutation p.P672R 0.14 deleterious_low_confidence(0) benign(0.345) TCGA-77-7141-01 5 140588790 140588790 T C PCDHB12 Missense_Mutation p.L104P 0.30 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-77-7141-01 5 140736900 140736900 G A PCDHGA4 Silent p.L711L 0.20 TCGA-77-7141-01 5 145718672 145718672 G C POU4F3 5'UTR 0.13 TCGA-77-7141-01 5 149361078 149361078 A G SLC26A2 Missense_Mutation p.H641R 0.31 tolerated(0.56) benign(0.005) TCGA-77-7141-01 5 156514269 156514269 C G HAVCR2 Missense_Mutation p.L250F 0.38 tolerated(0.07) benign(0.063) TCGA-77-7141-01 5 156934121 156934121 G A ADAM19 Silent p.I311I 0.07 TCGA-77-7141-01 5 159849867 159849867 C G PTTG1 Silent p.L81L 0.16 TCGA-77-7141-01 5 161495079 161495079 T G GABRG2 Missense_Mutation p.V25G 0.35 deleterious_low_confidence(0.04) benign(0.06) TCGA-77-7141-01 5 16701345 16701345 G A MYO10 Silent p.L1053L 0.45 TCGA-77-7141-01 5 169480 169480 G A PLEKHG4B Missense_Mutation p.E812K 0.36 deleterious(0) probably_damaging(1) TCGA-77-7141-01 5 178548669 178548669 G C ADAMTS2 Missense_Mutation p.I1057M 0.20 tolerated(0.06) benign(0.097) TCGA-77-7141-01 5 179225512 179225512 C A MGAT4B Splice_Site p.X489_splice 0.32 TCGA-77-7141-01 5 179743813 179743813 C T GFPT2 Missense_Mutation p.R368Q 0.12 deleterious(0.05) benign(0.12) TCGA-77-7141-01 5 23527405 23527405 C T PRDM9 Silent p.L736L 0.29 TCGA-77-7141-01 5 24487867 24487867 C T CDH10 Missense_Mutation p.G758R 0.31 deleterious(0.04) possibly_damaging(0.836) TCGA-77-7141-01 5 31423003 31423003 G T DROSHA Missense_Mutation p.L1104I 0.50 deleterious(0) probably_damaging(0.911) TCGA-77-7141-01 5 34033428 34033428 C T C1QTNF3 Missense_Mutation p.G184E 0.38 deleterious(0) probably_damaging(0.996) TCGA-77-7141-01 5 35988606 35988606 C A UGT3A1 Nonsense_Mutation p.E48* 0.35 TCGA-77-7141-01 5 3600183 3600183 G C IRX1 Missense_Mutation p.W374S 0.39 deleterious(0) probably_damaging(0.954) TCGA-77-7141-01 5 41155184 41155184 A G C6 Missense_Mutation p.V664A 0.25 deleterious(0.02) benign(0.415) TCGA-77-7141-01 5 54281121 54281121 C T ESM1 Missense_Mutation p.M75I 0.12 tolerated(0.05) benign(0.026) TCGA-77-7141-01 5 54424434 54424434 G T CDC20B Missense_Mutation p.L237I 0.36 tolerated(0.12) possibly_damaging(0.727) TCGA-77-7141-01 5 54640370 54640370 A G SKIV2L2 Silent p.T309T 0.19 TCGA-77-7141-01 5 61684800 61684800 C G DIMT1 3'UTR 0.33 TCGA-77-7141-01 5 64079749 64079749 T C CWC27 Silent p.F113F 0.18 TCGA-77-7141-01 5 64079765 64079765 C G CWC27 Missense_Mutation p.R119G 0.17 tolerated(0.46) possibly_damaging(0.603) TCGA-77-7141-01 5 66448579 66448579 G T MAST4 Missense_Mutation p.S1137I 0.12 possibly_damaging(0.69) TCGA-77-7141-01 5 70819764 70819764 A T BDP1 Splice_Site p.X1796_splice 0.24 TCGA-77-7141-01 5 75866454 75866454 G A IQGAP2 Missense_Mutation p.R118K 0.13 tolerated(0.53) possibly_damaging(0.796) TCGA-77-7141-01 5 76714233 76714233 C G PDE8B Silent p.V697V 0.19 TCGA-77-7141-01 5 77590302 77590302 G A AP3B1 Silent p.F34F 0.17 TCGA-77-7141-01 5 840535 840535 C G ZDHHC11 Intron 0.09 TCGA-77-7141-01 5 89990309 89990309 T C GPR98 Missense_Mutation p.V2579A 0.13 possibly_damaging(0.857) TCGA-77-7141-01 6 10626842 10626842 C G GCNT2 3'UTR 0.63 TCGA-77-7141-01 6 107390767 107390767 T A BEND3 Missense_Mutation p.Q543L 0.46 tolerated(0.47) benign(0.055) TCGA-77-7141-01 6 107955289 107955289 G T SOBP Missense_Mutation p.G414V 0.39 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-77-7141-01 6 108535769 108535769 C T SNX3 Missense_Mutation p.D106N 0.18 tolerated(0.09) probably_damaging(0.974) TCGA-77-7141-01 6 117241613 117241613 T G RFX6 Silent p.T441T 0.05 TCGA-77-7141-01 6 127898593 127898593 G T C6orf58 Missense_Mutation p.W88L 0.19 deleterious(0) probably_damaging(0.992) TCGA-77-7141-01 6 130389474 130389474 G T L3MBTL3 Splice_Site p.X334_splice 0.39 TCGA-77-7141-01 6 132695779 132695779 C T MOXD1 Silent p.K134K 0.10 TCGA-77-7141-01 6 132860085 132860085 G T TAAR9 Missense_Mutation p.K219N 0.16 tolerated(0.21) possibly_damaging(0.629) TCGA-77-7141-01 6 132966587 132966587 A T TAAR1 Missense_Mutation p.F186I 0.25 deleterious(0.02) benign(0.296) TCGA-77-7141-01 6 138645198 138645198 C T KIAA1244 Silent p.F1636F 0.13 TCGA-77-7141-01 6 146350641 146350641 C T GRM1 5'UTR 0.07 TCGA-77-7141-01 6 158924447 158924447 C G TULP4 Missense_Mutation p.S1251C 0.04 deleterious_low_confidence(0) possibly_damaging(0.681) TCGA-77-7141-01 6 159457222 159457222 C G TAGAP Missense_Mutation p.E611D 0.13 tolerated(0.44) benign(0.011) TCGA-77-7141-01 6 160524822 160524822 C G IGF2R Missense_Mutation p.S2347C 0.11 deleterious(0.01) possibly_damaging(0.687) TCGA-77-7141-01 6 24843589 24843589 T A FAM65B Missense_Mutation p.Q474L 0.39 tolerated(0.29) benign(0.016) TCGA-77-7141-01 6 25850158 25850158 G A SLC17A3 Silent p.L382L 0.42 TCGA-77-7141-01 6 26032089 26032089 G A HIST1H3B Missense_Mutation p.P67L 0.21 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-77-7141-01 6 26444522 26444522 G C BTN3A3 Silent p.L141L 0.06 TCGA-77-7141-01 6 27114470 27114470 C G HIST1H2BK Missense_Mutation p.E36D 0.07 deleterious_low_confidence(0.02) benign(0.03) TCGA-77-7141-01 6 27216966 27216966 G A PRSS16 Missense_Mutation p.G142D 0.23 deleterious(0) benign(0.036) TCGA-77-7141-01 6 27833317 27833317 A T HIST1H2AL Missense_Mutation p.E62V 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.726) TCGA-77-7141-01 6 28227302 28227302 C T NKAPL Silent p.L51L 0.22 TCGA-77-7141-01 6 29054353 29054353 C A OR2B3 Missense_Mutation p.V225L 0.37 deleterious(0.01) possibly_damaging(0.777) TCGA-77-7141-01 6 29079899 29079899 A T OR2J3 Missense_Mutation p.T78S 0.17 tolerated(0.09) benign(0.249) TCGA-77-7141-01 6 29141594 29141594 A T OR2J2 Missense_Mutation p.Y61F 0.47 deleterious(0) probably_damaging(1) TCGA-77-7141-01 6 29342592 29342592 G C OR12D3 Missense_Mutation p.S158C 0.08 deleterious(0) probably_damaging(0.992) TCGA-77-7141-01 6 29395097 29395097 G C OR11A1 Missense_Mutation p.L108V 0.25 deleterious(0) possibly_damaging(0.677) TCGA-77-7141-01 6 29395113 29395113 G C OR11A1 Missense_Mutation p.F102L 0.24 tolerated(0.56) benign(0.039) TCGA-77-7141-01 6 31545370 31545370 C T TNF 3'UTR 0.21 TCGA-77-7141-01 6 31617336 31617336 G A BAG6 Silent p.L59L 0.09 TCGA-77-7141-01 6 31692567 31692567 G A C6orf25 Silent p.Q189Q 0.13 TCGA-77-7141-01 6 31852199 31852199 C T EHMT2 Missense_Mutation p.R914Q 0.50 deleterious(0.03) probably_damaging(0.99) TCGA-77-7141-01 6 36181735 36181735 C T BRPF3 Missense_Mutation p.P854L 0.18 tolerated(0.16) benign(0) TCGA-77-7141-01 6 36298422 36298422 C G C6orf222 Missense_Mutation p.A16P 0.45 deleterious(0.01) benign(0.231) TCGA-77-7141-01 6 36464562 36464562 G C STK38 Missense_Mutation p.S398C 0.09 tolerated(0.05) benign(0.246) TCGA-77-7141-01 6 38050191 38050191 C G ZFAND3 Missense_Mutation p.H107D 0.06 tolerated(0.17) benign(0.013) TCGA-77-7141-01 6 41705519 41705519 G A PGC Silent p.F321F 0.08 TCGA-77-7141-01 6 44971401 44971401 C G SUPT3H Missense_Mutation p.E176Q 0.49 tolerated(0.14) possibly_damaging(0.756) TCGA-77-7141-01 6 46661010 46661010 G C TDRD6 Missense_Mutation p.E1715D 0.09 tolerated(0.27) benign(0.005) TCGA-77-7141-01 6 46821660 46821660 T C GPR116 3'UTR 0.21 TCGA-77-7141-01 6 51824730 51824730 T C PKHD1 Missense_Mutation p.E1949G 0.18 tolerated(0.08) possibly_damaging(0.717) TCGA-77-7141-01 6 52616416 52616416 C A GSTA2 Nonsense_Mutation p.E169* 0.48 TCGA-77-7141-01 6 56468053 56468053 C A DST Intron 0.47 TCGA-77-7141-01 6 57006213 57006213 G A ZNF451 Missense_Mutation p.M272I 0.37 deleterious(0.04) probably_damaging(0.989) TCGA-77-7141-01 6 62611179 62611179 C G KHDRBS2 Missense_Mutation p.G194A 0.21 tolerated(0.08) benign(0.192) TCGA-77-7141-01 6 74517884 74517884 G T CD109 Missense_Mutation p.A1090S 0.24 tolerated(0.53) benign(0.124) TCGA-77-7141-01 6 88854848 88854848 G T CNR1 Missense_Mutation p.P49H 0.41 tolerated_low_confidence(0.46) possibly_damaging(0.62) TCGA-77-7141-01 6 90604292 90604299 GGTACTTC - GJA10 Frame_Shift_Del p.V36Cfs*4 0.10 TCGA-77-7141-01 6 99848465 99848465 G C PNISR Missense_Mutation p.S790C 0.08 deleterious_low_confidence(0) unknown(0) TCGA-77-7141-01 7 100086308 100086308 G C NYAP1 Missense_Mutation p.E322Q 0.05 deleterious(0.02) possibly_damaging(0.794) TCGA-77-7141-01 7 100204200 100204200 T C PCOLCE Missense_Mutation p.L296P 0.44 tolerated(0.4) benign(0) TCGA-77-7141-01 7 100284321 100284321 G A GIGYF1 Silent p.L215L 0.05 TCGA-77-7141-01 7 100486191 100486191 C G SRRT 3'UTR 0.07 TCGA-77-7141-01 7 100887414 100887414 C G FIS1 Missense_Mutation p.E18Q 0.07 deleterious(0.01) probably_damaging(0.951) TCGA-77-7141-01 7 101847722 101847722 C A CUX1 Missense_Mutation p.P998T 0.12 deleterious(0) unknown(0) TCGA-77-7141-01 7 103008393 103008393 A G PSMC2 Silent p.R398R 0.37 TCGA-77-7141-01 7 103048346 103048346 C G SLC26A5 Missense_Mutation p.E280D 0.07 tolerated(0.87) probably_damaging(0.996) TCGA-77-7141-01 7 103216138 103216138 C G RELN Missense_Mutation p.R1387P 0.06 deleterious(0) possibly_damaging(0.872) TCGA-77-7141-01 7 103389915 103389915 T A RELN Missense_Mutation p.D205V 0.06 deleterious(0) benign(0.024) TCGA-77-7141-01 7 104782519 104782519 C G SRPK2 Missense_Mutation p.E493D 0.14 tolerated(0.45) benign(0.275) TCGA-77-7141-01 7 106797628 106797628 C G PRKAR2B Intron 0.15 TCGA-77-7141-01 7 122377093 122377093 T - CADPS2 Frame_Shift_Del p.E124Nfs*14 0.12 TCGA-77-7141-01 7 122635531 122635531 C A TAS2R16 Missense_Mutation p.G53V 0.24 deleterious(0.01) probably_damaging(0.983) TCGA-77-7141-01 7 128475408 128475408 G C FLNC Silent p.L127L 0.24 TCGA-77-7141-01 7 130002724 130002724 G T CPA5 Splice_Site p.X213_splice 0.30 TCGA-77-7141-01 7 130038505 130038505 A T CEP41 3'UTR 0.47 TCGA-77-7141-01 7 138555969 138555969 C T KIAA1549 Silent p.P1495P 0.38 TCGA-77-7141-01 7 142206949 142206949 C A TRBV10-2 Missense_Mutation p.R4S 0.35 tolerated(0.59) benign(0.212) TCGA-77-7141-01 7 142566073 142566073 G C EPHB6 Missense_Mutation p.V665L 0.41 tolerated(0.22) benign(0.037) TCGA-77-7141-01 7 142626136 142626136 G C TRPV5 Missense_Mutation p.I189M 0.07 tolerated(0.06) possibly_damaging(0.527) TCGA-77-7141-01 7 143632413 143632413 C A OR2F2 Missense_Mutation p.L30M 0.31 deleterious(0.04) possibly_damaging(0.606) TCGA-77-7141-01 7 143772006 143772006 G T OR2A25 Missense_Mutation p.G232W 0.39 deleterious(0) probably_damaging(0.999) TCGA-77-7141-01 7 14613959 14613959 T G DGKB Missense_Mutation p.I551L 0.09 tolerated(0.08) possibly_damaging(0.728) TCGA-77-7141-01 7 14722381 14722381 A T DGKB Silent p.T305T 0.36 TCGA-77-7141-01 7 149152999 149152999 G T ZNF777 Missense_Mutation p.P39T 0.28 deleterious_low_confidence(0.01) benign(0.273) TCGA-77-7141-01 7 149190032 149190032 G C ZNF746 Silent p.S146S 0.29 TCGA-77-7141-01 7 149510739 149510739 C A SSPO RNA 0.43 TCGA-77-7141-01 7 150937525 150937525 G A SMARCD3 Silent p.I341I 0.34 TCGA-77-7141-01 7 19765365 19765365 G T TMEM196 Silent p.I77I 0.31 TCGA-77-7141-01 7 21641188 21641188 G T DNAH11 Missense_Mutation p.L1200F 0.46 probably_damaging(1) TCGA-77-7141-01 7 21784130 21784130 C G DNAH11 Silent p.A2750A 0.32 TCGA-77-7141-01 7 27213430 27213430 C G HOXA10 Missense_Mutation p.E166Q 0.19 deleterious(0) probably_damaging(0.987) TCGA-77-7141-01 7 29126111 29126111 C A CPVL Missense_Mutation p.V200F 0.24 deleterious(0.01) possibly_damaging(0.632) TCGA-77-7141-01 7 31829743 31829743 T G PDE1C Intron 0.22 TCGA-77-7141-01 7 33138994 33138994 C T RP9 Missense_Mutation p.A80T 0.33 deleterious(0.02) probably_damaging(0.982) TCGA-77-7141-01 7 38725482 38725482 G T FAM183B Missense_Mutation p.L42M 0.26 tolerated(0.09) possibly_damaging(0.818) TCGA-77-7141-01 7 44047032 44047032 C A SPDYE1 Silent p.P266P 0.29 TCGA-77-7141-01 7 45930268 45930268 C G IGFBP1 Silent p.T157T 0.04 TCGA-77-7141-01 7 51097264 51097264 T A COBL Missense_Mutation p.D510V 0.16 deleterious(0) possibly_damaging(0.87) TCGA-77-7141-01 7 53103892 53103892 G T POM121L12 Missense_Mutation p.E176D 0.38 tolerated(0.06) benign(0.001) TCGA-77-7141-01 7 53104068 53104068 C A POM121L12 Missense_Mutation p.P235H 0.35 deleterious(0) probably_damaging(0.979) TCGA-77-7141-01 7 53104311 53104311 C A POM121L12 3'UTR 0.37 TCGA-77-7141-01 7 64639771 64639771 G T INTS4L1 RNA 0.15 TCGA-77-7141-01 7 66456156 66456156 C G SBDS Missense_Mutation p.E198Q 0.12 deleterious(0.01) possibly_damaging(0.826) TCGA-77-7141-01 7 70853224 70853224 T G WBSCR17 Missense_Mutation p.C142W 0.06 deleterious(0) probably_damaging(0.984) TCGA-77-7141-01 7 72733018 72733018 G T TRIM50 Missense_Mutation p.R177S 0.30 tolerated(0.3) benign(0.006) TCGA-77-7141-01 7 77402470 77402470 C G RSBN1L Silent p.T544T 0.26 TCGA-77-7141-01 7 77885394 77885394 G A MAGI2 Missense_Mutation p.P638L 0.17 tolerated(0.06) probably_damaging(0.96) TCGA-77-7141-01 7 81399210 81399210 G C HGF Missense_Mutation p.I26M 0.38 deleterious(0.02) benign(0.33) TCGA-77-7141-01 7 81667413 81667413 C T CACNA2D1 Missense_Mutation p.A340T 0.33 deleterious(0) probably_damaging(0.999) TCGA-77-7141-01 7 83119532 83119532 G C SEMA3E Silent p.L58L 0.42 TCGA-77-7141-01 7 88423533 88423533 C A C7orf62 Missense_Mutation p.D242Y 0.39 deleterious(0) probably_damaging(1) TCGA-77-7141-01 7 88965615 88965615 A T ZNF804B Missense_Mutation p.I1107L 0.14 tolerated(0.94) benign(0.001) TCGA-77-7141-01 7 99818669 99818669 C T PVRIG Missense_Mutation p.S259L 0.37 tolerated(0.21) benign(0.115) TCGA-77-7141-01 8 100883044 100883044 T A VPS13B Silent p.L3833L 0.32 TCGA-77-7141-01 8 110100368 110100368 C A TRHR Silent p.V209V 0.34 TCGA-77-7141-01 8 110442266 110442266 G A PKHD1L1 Missense_Mutation p.G1077R 0.47 deleterious(0) probably_damaging(0.999) TCGA-77-7141-01 8 113364684 113364684 A G CSMD3 Silent p.D2072D 0.09 TCGA-77-7141-01 8 113585730 113585730 T A CSMD3 Missense_Mutation p.S1348C 0.14 deleterious(0.01) possibly_damaging(0.757) TCGA-77-7141-01 8 114449073 114449073 A C CSMD3 Missense_Mutation p.I4S 0.33 tolerated_low_confidence(0.4) benign(0.011) TCGA-77-7141-01 8 118185013 118185013 G T SLC30A8 3'UTR 0.27 TCGA-77-7141-01 8 121561069 121561069 G A SNTB1 Silent p.S422S 0.28 TCGA-77-7141-01 8 133150176 133150176 G A KCNQ3 Silent p.A552A 0.07 TCGA-77-7141-01 8 133769498 133769498 G T TMEM71 Missense_Mutation p.P28H 0.26 deleterious(0.04) benign(0.364) TCGA-77-7141-01 8 139165076 139165076 C T FAM135B Missense_Mutation p.A548T 0.40 tolerated(0.46) benign(0.008) TCGA-77-7141-01 8 144644260 144644260 G T GSDMD Missense_Mutation p.V319L 0.22 tolerated(0.46) benign(0.057) TCGA-77-7141-01 8 145772857 145772857 C T ARHGAP39 Missense_Mutation p.R538Q 0.22 tolerated(0.16) benign(0.254) TCGA-77-7141-01 8 17612577 17612577 G C MTUS1 Missense_Mutation p.S247C 0.13 deleterious(0.01) possibly_damaging(0.839) TCGA-77-7141-01 8 17914981 17914981 C T ASAH1 3'UTR 0.21 TCGA-77-7141-01 8 18079668 18079668 G C NAT1 Missense_Mutation p.E100Q 0.04 deleterious(0) probably_damaging(0.999) TCGA-77-7141-01 8 22584733 22584733 C A PEBP4 Missense_Mutation p.G120C 0.45 deleterious(0) probably_damaging(0.992) TCGA-77-7141-01 8 27891121 27891121 G C NUGGC Missense_Mutation p.L569V 0.10 tolerated(0.16) possibly_damaging(0.849) TCGA-77-7141-01 8 30969212 30969212 C G WRN Missense_Mutation p.Q724E 0.14 deleterious(0.01) benign(0.354) TCGA-77-7141-01 8 36694447 36694447 T C KCNU1 Missense_Mutation p.V501A 0.07 tolerated(0.53) possibly_damaging(0.525) TCGA-77-7141-01 8 39845463 39845463 G C IDO2 Missense_Mutation p.E188Q 0.25 deleterious(0.01) probably_damaging(1) TCGA-77-7141-01 8 39872917 39872917 G T IDO2 Silent p.L353L 0.55 TCGA-77-7141-01 8 41164352 41164352 C A SFRP1 Intron 0.43 TCGA-77-7141-01 8 51415343 51415343 G T SNTG1 Missense_Mutation p.Q123H 0.42 tolerated(1) benign(0.03) TCGA-77-7141-01 8 52320721 52320721 C G PXDNL Missense_Mutation p.D1155H 0.37 deleterious(0) probably_damaging(0.929) TCGA-77-7141-01 8 54852162 54852162 G A RGS20 Missense_Mutation p.M179I 0.30 deleterious(0.03) benign(0.027) TCGA-77-7141-01 8 62588741 62588741 C G ASPH Intron 0.14 TCGA-77-7141-01 8 70744101 70744101 C T SLCO5A1 Missense_Mutation p.A270T 0.25 deleterious(0) probably_damaging(0.986) TCGA-77-7141-01 8 77896093 77896093 C G PEX2 Missense_Mutation p.V108L 0.42 tolerated(0.91) benign(0.006) TCGA-77-7141-01 8 8235417 8235417 C G SGK223 Missense_Mutation p.E168Q 0.15 benign(0.008) TCGA-77-7141-01 8 87560627 87560627 C G CPNE3 Silent p.L326L 0.09 TCGA-77-7141-01 8 91072373 91072373 C G CALB1 3'UTR 0.09 TCGA-77-7141-01 8 98288721 98288721 A G TSPYL5 3'UTR 0.35 TCGA-77-7141-01 9 100193303 100193303 G A TDRD7 Missense_Mutation p.R99H 0.08 deleterious(0.03) benign(0.003) TCGA-77-7141-01 9 101014074 101014074 G C TBC1D2 Silent p.L168L 0.09 TCGA-77-7141-01 9 101748032 101748032 G C COL15A1 Missense_Mutation p.V96L 0.09 tolerated(0.08) benign(0.002) TCGA-77-7141-01 9 101911635 101911635 G C TGFBR1 3'UTR 0.43 TCGA-77-7141-01 9 112900417 112900417 C G PALM2-AKAP2 Missense_Mutation p.Q865E 0.05 tolerated(0.13) probably_damaging(0.992) TCGA-77-7141-01 9 115600864 115600864 G A SNX30 Missense_Mutation p.V301M 0.56 tolerated(0.51) benign(0.34) TCGA-77-7141-01 9 116858672 116858672 G C KIF12 Missense_Mutation p.Q107E 0.08 tolerated(0.61) benign(0.174) TCGA-77-7141-01 9 119097314 119097314 G C PAPPA Missense_Mutation p.S1191T 0.45 tolerated(0.25) benign(0.153) TCGA-77-7141-01 9 122011262 122011262 G T BRINP1 Missense_Mutation p.L129M 0.34 deleterious(0.01) possibly_damaging(0.452) TCGA-77-7141-01 9 135772578 135772578 C G TSC1 Missense_Mutation p.E990Q 0.04 tolerated(0.11) possibly_damaging(0.51) TCGA-77-7141-01 9 137804948 137804948 G C FCN1 Missense_Mutation p.L128V 0.24 deleterious(0.01) possibly_damaging(0.538) TCGA-77-7141-01 9 138393713 138393713 G A MRPS2 Missense_Mutation p.E65K 0.12 tolerated(0.13) benign(0.032) TCGA-77-7141-01 9 139391489 139391489 C A NOTCH1 Silent p.L2234L 0.32 TCGA-77-7141-01 9 139699162 139699162 C A CCDC183 Intron 0.49 TCGA-77-7141-01 9 140881279 140881279 C T CACNA1B Silent p.F649F 0.09 TCGA-77-7141-01 9 140943759 140943759 T C CACNA1B Silent p.F1234F 0.56 TCGA-77-7141-01 9 17789418 17789418 G T SH3GL2 Missense_Mutation p.R165L 0.55 deleterious(0) possibly_damaging(0.874) TCGA-77-7141-01 9 2159898 2159898 G A SMARCA2 Intron 0.14 TCGA-77-7141-01 9 2718219 2718219 G A KCNV2 Silent p.L160L 0.05 TCGA-77-7141-01 9 2718438 2718438 C G KCNV2 Missense_Mutation p.F233L 0.05 deleterious(0.01) possibly_damaging(0.899) TCGA-77-7141-01 9 34249787 34249787 C A UBAP1 Missense_Mutation p.P429H 0.69 tolerated(0.39) benign(0.015) TCGA-77-7141-01 9 35106294 35106294 G C FAM214B Silent p.V391V 0.14 TCGA-77-7141-01 9 37745659 37745659 C G FRMPD1 Missense_Mutation p.F1210L 0.08 tolerated_low_confidence(0.24) benign(0.004) TCGA-77-7141-01 9 71628484 71628484 G A PRKACG Silent p.I175I 0.38 TCGA-77-7141-01 9 71687662 71687662 C G FXN Missense_Mutation p.S206C 0.08 deleterious(0) probably_damaging(0.999) TCGA-77-7141-01 9 75445576 75445576 G C TMC1 Missense_Mutation p.K746N 0.50 tolerated(0.42) unknown(0) TCGA-77-7141-01 9 8404633 8404633 A G PTPRD Missense_Mutation p.W1372R 0.44 deleterious(0) possibly_damaging(0.745) TCGA-77-7141-01 9 84609298 84609298 G C SPATA31D1 Missense_Mutation p.D1305H 0.11 deleterious(0.02) benign(0.424) TCGA-77-7141-01 9 8528780 8528780 C A PTPRD Splice_Site p.X118_splice 0.07 TCGA-77-7141-01 9 95277187 95277187 C T ECM2 Silent p.L260L 0.08 TCGA-77-7141-01 X 101970665 101970665 A C GPRASP2 Missense_Mutation p.N290H 0.25 deleterious(0.03) possibly_damaging(0.885) TCGA-77-7141-01 X 101970667 101970667 C T GPRASP2 Silent p.N290N 0.25 TCGA-77-7141-01 X 106117021 106117021 G A TBC1D8B Silent p.E1063E 0.15 TCGA-77-7141-01 X 106459923 106459923 G A PIH1D3 Missense_Mutation p.G59E 0.96 deleterious(0.01) probably_damaging(0.969) TCGA-77-7141-01 X 110495553 110495553 C G CAPN6 Silent p.L227L 0.88 TCGA-77-7141-01 X 110654078 110654078 G C DCX Nonsense_Mutation p.S42* 0.10 TCGA-77-7141-01 X 112022881 112022881 G C AMOT Missense_Mutation p.A834G 0.80 unknown(0) TCGA-77-7141-01 X 114141873 114141873 C G HTR2C Missense_Mutation p.I424M 0.72 tolerated_low_confidence(0.11) benign(0.001) TCGA-77-7141-01 X 129147444 129147444 C T BCORL1 Silent p.P232P 0.09 TCGA-77-7141-01 X 129543303 129543303 C G RBMX2 Silent p.L82L 0.12 TCGA-77-7141-01 X 132160349 132160349 T G USP26 Missense_Mutation p.K634Q 0.76 tolerated(0.08) possibly_damaging(0.827) TCGA-77-7141-01 X 135586537 135586537 G T HTATSF1 Missense_Mutation p.R250I 0.24 deleterious(0.01) possibly_damaging(0.714) TCGA-77-7141-01 X 135594012 135594013 AT - HTATSF1 Frame_Shift_Del p.N703Rfs*5 0.39 TCGA-77-7141-01 X 137785245 137785245 C A FGF13 Silent p.L111L 0.80 TCGA-77-7141-01 X 141291458 141291458 A T MAGEC2 Missense_Mutation p.S106T 0.71 tolerated(0.44) possibly_damaging(0.787) TCGA-77-7141-01 X 144904508 144904508 A T SLITRK2 Missense_Mutation p.R189W 0.24 deleterious(0) probably_damaging(1) TCGA-77-7141-01 X 152734672 152734672 C A HAUS7 Missense_Mutation p.K62N 0.29 tolerated(0.19) benign(0.005) TCGA-77-7141-01 X 1584472 1584472 G T P2RY8 Missense_Mutation p.S327Y 0.38 deleterious(0) probably_damaging(0.959) TCGA-77-7141-01 X 16168494 16168494 A G GRPR Silent p.K160K 0.07 TCGA-77-7141-01 X 30269299 30269299 A T MAGEB1 Missense_Mutation p.Y230F 0.17 tolerated(0.09) possibly_damaging(0.6) TCGA-77-7141-01 X 34148635 34148635 A G FAM47A Silent p.D587D 0.24 TCGA-77-7141-01 X 34961456 34961456 G C FAM47B Missense_Mutation p.E170Q 0.81 tolerated(0.17) possibly_damaging(0.467) TCGA-77-7141-01 X 37029016 37029016 C T FAM47C Missense_Mutation p.R845C 0.09 tolerated(0.13) benign(0.01) TCGA-77-7141-01 X 38260646 38260646 C G OTC Missense_Mutation p.P169A 0.23 deleterious(0) possibly_damaging(0.7) TCGA-77-7141-01 X 47098765 47098765 G T USP11 Missense_Mutation p.R144L 0.62 tolerated(0.29) possibly_damaging(0.564) TCGA-77-7141-01 X 50345690 50345690 C T SHROOM4 Silent p.E1295E 0.05 TCGA-77-7141-01 X 51079128 51079128 G A NUDT10 3'UTR 0.87 TCGA-77-7141-01 X 51486926 51486926 C G GSPT2 Missense_Mutation p.F68L 0.11 deleterious_low_confidence(0) possibly_damaging(0.685) TCGA-77-7141-01 X 52677314 52677314 A G SSX7 Missense_Mutation p.S155P 0.06 tolerated(0.18) benign(0.02) TCGA-77-7141-01 X 5811119 5811119 C T NLGN4X Missense_Mutation p.M730I 0.63 tolerated_low_confidence(0.24) benign(0.002) TCGA-77-7141-01 X 70787360 70787360 G A OGT Missense_Mutation p.R867H 0.11 tolerated(0.06) probably_damaging(0.912) TCGA-77-7141-01 X 74291502 74291502 C G ABCB7 Missense_Mutation p.R351T 0.20 tolerated(0.08) benign(0.003) TCGA-77-7141-01 X 79286599 79286599 C A TBX22 Missense_Mutation p.H518N 0.57 deleterious_low_confidence(0.04) benign(0.085) TCGA-77-7141-01 X 88008612 88008612 C A CPXCR1 Missense_Mutation p.A66E 0.52 deleterious(0.03) probably_damaging(0.932) TCGA-77-7141-01 X 96639009 96639009 G A DIAPH2 Silent p.Q1037Q 0.75 TCGA-77-7141-01 X 9864082 9864082 G A SHROOM2 Missense_Mutation p.E712K 0.60 tolerated(0.93) benign(0.039) TCGA-77-7141-01 Y 4967538 4967538 C G PCDH11Y Missense_Mutation p.S640C 0.55 deleterious(0.04) probably_damaging(0.987) TCGA-77-7142-01 10 102046367 102046367 G A BLOC1S2 Missense_Mutation p.A17V 0.16 tolerated(0.31) benign(0.001) TCGA-77-7142-01 10 105363035 105363035 C A SH3PXD2A Missense_Mutation p.S619I 0.25 tolerated_low_confidence(0.22) possibly_damaging(0.474) TCGA-77-7142-01 10 106865168 106865168 C G SORCS3 Silent p.L369L 0.24 TCGA-77-7142-01 10 106865171 106865171 C A SORCS3 Silent p.T370T 0.30 TCGA-77-7142-01 10 133961454 133961454 A T JAKMIP3 Splice_Site p.X584_splice 0.35 TCGA-77-7142-01 10 134943019 134943019 G T GPR123 3'UTR 0.17 TCGA-77-7142-01 10 16994285 16994285 C A CUBN Silent p.A1653A 0.29 TCGA-77-7142-01 10 18254588 18254588 C A SLC39A12 Silent p.S240S 0.45 TCGA-77-7142-01 10 26589721 26589721 C T GAD2 Missense_Mutation p.A530V 0.20 deleterious(0) probably_damaging(0.976) TCGA-77-7142-01 10 29769482 29769482 G A SVIL Silent p.F1787F 0.11 TCGA-77-7142-01 10 35500193 35500193 G A CREM Intron 0.27 TCGA-77-7142-01 10 46135397 46135397 T A ZFAND4 Missense_Mutation p.Y195F 0.18 tolerated(0.1) probably_damaging(0.997) TCGA-77-7142-01 10 48426463 48426463 C T GDF10 3'UTR 0.19 TCGA-77-7142-01 10 64159497 64159497 C T ZNF365 Intron 0.10 TCGA-77-7142-01 10 71026498 71026498 A T HKDC1 Silent p.A913A 0.21 TCGA-77-7142-01 10 75529773 75529773 G T SEC24C Missense_Mutation p.L954F 0.05 deleterious(0.01) possibly_damaging(0.452) TCGA-77-7142-01 10 7618437 7618437 G A ITIH5 Nonsense_Mutation p.R653* 0.16 TCGA-77-7142-01 10 97366455 97366455 C T ALDH18A1 3'UTR 0.29 TCGA-77-7142-01 11 104897542 104897542 T A CASP1 Intron 0.51 TCGA-77-7142-01 11 118919004 118919004 C T HYOU1 Missense_Mutation p.A778T 0.17 tolerated(0.25) benign(0.013) TCGA-77-7142-01 11 123894436 123894436 C A OR10G9 Silent p.T239T 0.37 TCGA-77-7142-01 11 128709370 128709370 T A KCNJ1 Missense_Mutation p.S276C 0.60 deleterious(0) probably_damaging(0.999) TCGA-77-7142-01 11 134244114 134244114 C T GLB1L2 Silent p.I557I 0.09 TCGA-77-7142-01 11 14853185 14853185 G T PDE3B Splice_Site p.X653_splice 0.29 TCGA-77-7142-01 11 16071484 16071484 C A SOX6 Missense_Mutation p.D418Y 0.22 deleterious(0) probably_damaging(0.926) TCGA-77-7142-01 11 2156697 2156697 G A IGF2 Silent p.A75A 0.30 TCGA-77-7142-01 11 2434051 2434051 C T TRPM5 Missense_Mutation p.G763D 0.21 tolerated(0.06) probably_damaging(1) TCGA-77-7142-01 11 32987901 32987901 G T QSER1 Missense_Mutation p.K1546N 0.16 deleterious(0) probably_damaging(1) TCGA-77-7142-01 11 32987902 32987902 G T QSER1 Nonsense_Mutation p.E1547* 0.16 TCGA-77-7142-01 11 34680419 34680419 C T EHF Nonsense_Mutation p.R304* 0.38 TCGA-77-7142-01 11 3765737 3765737 A G NUP98 Splice_Site p.X470_splice 0.06 TCGA-77-7142-01 11 4936005 4936005 A T OR51G2 Missense_Mutation p.Y297N 0.26 deleterious(0) possibly_damaging(0.898) TCGA-77-7142-01 11 55136214 55136214 G C OR4A15 Missense_Mutation p.L285F 0.24 deleterious_low_confidence(0) benign(0.303) TCGA-77-7142-01 11 55406549 55406549 G A OR4P4 Missense_Mutation p.S239N 0.33 deleterious(0) possibly_damaging(0.857) TCGA-77-7142-01 11 55652985 55652985 C T TRIM51 Silent p.T27T 0.39 TCGA-77-7142-01 11 56058256 56058256 C A OR8H1 Missense_Mutation p.G95C 0.22 deleterious(0.01) possibly_damaging(0.823) TCGA-77-7142-01 11 56058257 56058257 C A OR8H1 Missense_Mutation p.M94I 0.22 tolerated(0.4) benign(0) TCGA-77-7142-01 11 57100468 57100468 G A SSRP1 Missense_Mutation p.P168S 0.04 deleterious(0) probably_damaging(0.967) TCGA-77-7142-01 11 5799175 5799175 G A OR52N5 Silent p.I230I 0.10 TCGA-77-7142-01 11 5878226 5878226 C A OR52E8 Missense_Mutation p.W236L 0.33 tolerated(0.28) benign(0.008) TCGA-77-7142-01 11 59211379 59211379 G T OR5A1 Silent p.S246S 0.25 TCGA-77-7142-01 11 59997497 59997497 G T MS4A4E Missense_Mutation p.T11N 0.30 deleterious_low_confidence(0.03) benign(0.032) TCGA-77-7142-01 11 65999660 65999660 G C PACS1 Silent p.V548V 0.23 TCGA-77-7142-01 11 67021032 67021041 TCAAGGACCC - KDM2A Frame_Shift_Del p.D1016Ffs*23 0.31 TCGA-77-7142-01 11 92568216 92568216 G A FAT3 Missense_Mutation p.S3351N 0.16 probably_damaging(0.991) TCGA-77-7142-01 12 100811927 100811927 G T SLC17A8 Missense_Mutation p.R473M 0.24 deleterious(0) benign(0.416) TCGA-77-7142-01 12 100811928 100811928 G T SLC17A8 Missense_Mutation p.R473S 0.24 deleterious(0.03) benign(0.033) TCGA-77-7142-01 12 100813719 100813719 G T SLC17A8 Nonsense_Mutation p.E518* 0.29 TCGA-77-7142-01 12 102159930 102159930 C T GNPTAB Silent p.K517K 0.13 TCGA-77-7142-01 12 102796226 102796226 C T IGF1 3'UTR 0.15 TCGA-77-7142-01 12 113538485 113538485 C A RASAL1 Missense_Mutation p.R743S 0.32 deleterious(0) benign(0.359) TCGA-77-7142-01 12 113538486 113538486 C A RASAL1 Splice_Site p.X743_splice 0.32 TCGA-77-7142-01 12 121093940 121093940 C T CABP1 Intron 0.10 TCGA-77-7142-01 12 123075910 123075910 G T KNTC1 Silent p.L1385L 0.12 TCGA-77-7142-01 12 13716374 13716374 C A GRIN2B Silent p.P1266P 0.16 TCGA-77-7142-01 12 14959468 14959468 G T SMCO3 Nonsense_Mutation p.C49* 0.55 TCGA-77-7142-01 12 1949908 1949908 C A CACNA2D4 Missense_Mutation p.A850S 0.52 deleterious(0.02) benign(0.066) TCGA-77-7142-01 12 20523043 20523043 G A PDE3A Silent p.L275L 0.05 TCGA-77-7142-01 12 22078928 22078928 C T ABCC9 Silent p.S118S 0.14 TCGA-77-7142-01 12 23893963 23893963 C A SOX5 Missense_Mutation p.E193D 0.10 tolerated(0.21) benign(0.005) TCGA-77-7142-01 12 31814842 31814842 A G METTL20 5'UTR 0.53 TCGA-77-7142-01 12 40153839 40153839 C T SLC2A13 Missense_Mutation p.D646N 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.802) TCGA-77-7142-01 12 41966404 41966404 C A PDZRN4 Missense_Mutation p.S608Y 0.23 deleterious(0) possibly_damaging(0.736) TCGA-77-7142-01 12 41966702 41966702 C A PDZRN4 Missense_Mutation p.F707L 0.22 tolerated(0.52) benign(0.169) TCGA-77-7142-01 12 43777625 43777625 C A ADAMTS20 Missense_Mutation p.M1536I 0.23 tolerated(0.4) benign(0.003) TCGA-77-7142-01 12 49239405 49239405 C T DDX23 Missense_Mutation p.R54Q 0.08 tolerated_low_confidence(0.2) unknown(0) TCGA-77-7142-01 12 52756210 52756210 C T KRT85 Missense_Mutation p.E375K 0.31 deleterious(0.04) benign(0.253) TCGA-77-7142-01 12 52822220 52822220 C T KRT75 Missense_Mutation p.R401Q 0.52 deleterious(0.05) possibly_damaging(0.507) TCGA-77-7142-01 12 55524398 55524398 T C OR9K2 Silent p.F282F 0.31 TCGA-77-7142-01 12 57943977 57943977 T C KIF5A 5'UTR 0.09 TCGA-77-7142-01 12 6709409 6709409 C T CHD4 Missense_Mutation p.E406K 0.06 tolerated(0.06) benign(0.094) TCGA-77-7142-01 12 72416246 72416246 G A TPH2 Missense_Mutation p.G379E 0.19 deleterious(0) probably_damaging(1) TCGA-77-7142-01 12 80770962 80770962 G T OTOGL Missense_Mutation p.D2272Y 0.19 deleterious(0) probably_damaging(1) TCGA-77-7142-01 12 85500311 85500311 G C LRRIQ1 Missense_Mutation p.A1099P 0.25 deleterious(0.02) benign(0.406) TCGA-77-7142-01 13 108518185 108518185 C T FAM155A Missense_Mutation p.E254K 0.14 tolerated(0.21) possibly_damaging(0.84) TCGA-77-7142-01 13 108518505 108518505 C T FAM155A Missense_Mutation p.R147Q 0.25 tolerated(0.3) possibly_damaging(0.883) TCGA-77-7142-01 13 109496715 109496715 C T MYO16 Silent p.A352A 0.51 TCGA-77-7142-01 13 32371455 32371455 C A RXFP2 Missense_Mutation p.A635D 0.47 deleterious(0.01) benign(0.078) TCGA-77-7142-01 13 47408942 47408942 C A HTR2A 3'UTR 0.31 TCGA-77-7142-01 13 67802097 67802097 C T PCDH9 Missense_Mutation p.S159N 0.10 deleterious(0.02) probably_damaging(0.99) TCGA-77-7142-01 13 88327644 88327644 A T SLITRK5 Translation_Start_Site p.M1? 0.41 deleterious_low_confidence(0) benign(0) TCGA-77-7142-01 14 100847822 100847822 A T WDR25 Missense_Mutation p.L187F 0.35 tolerated(0.25) benign(0.006) TCGA-77-7142-01 14 102493986 102493986 G A DYNC1H1 Missense_Mutation p.A3027T 0.17 benign(0.033) TCGA-77-7142-01 14 107095422 107095422 G C IGHV4-61 Missense_Mutation p.Q20E 0.18 tolerated(0.12) benign(0.068) TCGA-77-7142-01 14 21702142 21702142 C T HNRNPC Missense_Mutation p.D71N 0.17 tolerated(0.87) benign(0.046) TCGA-77-7142-01 14 22975687 22975687 C T TRAJ35 Silent p.%3D 0.11 TCGA-77-7142-01 14 24035672 24035672 C G AP1G2 Intron 0.26 TCGA-77-7142-01 14 35245625 35245625 A T BAZ1A Nonsense_Mutation p.L778* 0.18 TCGA-77-7142-01 14 60063446 60063446 C G RTN1 3'UTR 0.28 TCGA-77-7142-01 14 88652078 88652078 T A KCNK10 Missense_Mutation p.Y478F 0.30 deleterious_low_confidence(0.03) benign(0.185) TCGA-77-7142-01 14 94704023 94704023 G T PPP4R4 Missense_Mutation p.D285Y 0.20 deleterious(0) probably_damaging(0.982) TCGA-77-7142-01 15 28326971 28326971 A T OCA2 Missense_Mutation p.V17E 0.13 deleterious_low_confidence(0.01) benign(0.109) TCGA-77-7142-01 15 34543134 34543134 C A SLC12A6 Silent p.T486T 0.16 TCGA-77-7142-01 15 40259593 40259593 C T EIF2AK4 Missense_Mutation p.P356S 0.24 deleterious(0) possibly_damaging(0.824) TCGA-77-7142-01 15 43815976 43815976 C T MAP1A Missense_Mutation p.H769Y 0.46 benign(0.118) TCGA-77-7142-01 15 59399588 59399588 G T CCNB2 Missense_Mutation p.R31M 0.29 deleterious(0) possibly_damaging(0.873) TCGA-77-7142-01 15 62993413 62993413 G T TLN2 Missense_Mutation p.G566C 0.18 deleterious(0.02) possibly_damaging(0.867) TCGA-77-7142-01 15 72691216 72691216 G T TMEM202 Nonsense_Mutation p.E102* 0.10 TCGA-77-7142-01 15 75134489 75134489 G A ULK3 Silent p.G97G 0.34 TCGA-77-7142-01 15 83807940 83807940 C T HDGFRP3 3'UTR 0.15 TCGA-77-7142-01 16 14647921 14647921 C A PARN Splice_Site p.X469_splice 0.63 TCGA-77-7142-01 16 15869940 15869940 A G MYH11 Missense_Mutation p.M302T 0.58 benign(0.173) TCGA-77-7142-01 16 20974824 20974824 G T DNAH3 Missense_Mutation p.P3461H 0.67 deleterious(0) probably_damaging(0.999) TCGA-77-7142-01 16 30535959 30535959 A G ZNF768 Missense_Mutation p.L501P 0.25 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-77-7142-01 16 4862140 4862140 T G GLYR1 Missense_Mutation p.Y410S 0.43 deleterious(0) probably_damaging(0.918) TCGA-77-7142-01 16 50763758 50763758 G T NOD2 Missense_Mutation p.G999V 0.28 deleterious(0) probably_damaging(1) TCGA-77-7142-01 16 56397924 56397924 C T AMFR Missense_Mutation p.E565K 0.11 tolerated(0.13) benign(0.047) TCGA-77-7142-01 16 87448043 87448043 G A ZCCHC14 Missense_Mutation p.S390L 0.24 tolerated(0.09) benign(0.083) TCGA-77-7142-01 17 11650980 11650980 G C DNAH9 Missense_Mutation p.Q2169H 0.53 benign(0.112) TCGA-77-7142-01 17 33281504 33281504 C A CCT6B Missense_Mutation p.V151L 0.59 deleterious(0.04) possibly_damaging(0.518) TCGA-77-7142-01 17 34072444 34072444 C T GAS2L2 Missense_Mutation p.S691N 0.69 tolerated(0.21) benign(0.014) TCGA-77-7142-01 17 39333898 39333898 G A KRTAP4-2 3'UTR 0.14 TCGA-77-7142-01 17 40831627 40831627 G T CCR10 Missense_Mutation p.R345S 0.18 tolerated(0.4) probably_damaging(0.987) TCGA-77-7142-01 17 43215100 43215100 G A ACBD4 Missense_Mutation p.A172T 0.38 tolerated_low_confidence(0.09) benign(0.008) TCGA-77-7142-01 17 4436657 4436657 G A SPNS2 Missense_Mutation p.G403D 0.59 deleterious(0) probably_damaging(0.947) TCGA-77-7142-01 17 58740478 58740478 C T PPM1D Silent p.V461V 0.14 TCGA-77-7142-01 17 62028929 62028929 G C SCN4A Missense_Mutation p.P903R 0.64 tolerated(0.46) benign(0.003) TCGA-77-7142-01 17 62144171 62144171 C T ERN1 Silent p.R234R 0.60 TCGA-77-7142-01 17 7346537 7346537 C T FGF11 3'UTR 0.38 TCGA-77-7142-01 17 7577534 7577534 C G TP53 Missense_Mutation p.R249S 0.43 deleterious(0) probably_damaging(0.994) TCGA-77-7142-01 17 9862565 9862565 C T GAS7 Missense_Mutation p.G160E 0.35 deleterious(0.03) possibly_damaging(0.672) TCGA-77-7142-01 18 13884740 13884740 C A MC2R Missense_Mutation p.V260L 0.16 tolerated(1) benign(0.339) TCGA-77-7142-01 18 29488738 29488738 T A TRAPPC8 Silent p.T367T 0.19 TCGA-77-7142-01 18 44555330 44555330 G C TCEB3C Missense_Mutation p.A295G 0.02 deleterious(0.02) benign(0.172) TCGA-77-7142-01 18 72353028 72353028 C T ZNF407 Silent p.N1584N 0.14 TCGA-77-7142-01 19 1003312 1003312 G C GRIN3B Missense_Mutation p.D204H 0.25 deleterious(0) probably_damaging(0.914) TCGA-77-7142-01 19 10563992 10563992 G T PDE4A Intron 0.34 TCGA-77-7142-01 19 110908 110908 A T OR4F17 Missense_Mutation p.D77V 0.12 deleterious(0) probably_damaging(0.998) TCGA-77-7142-01 19 1615532 1615532 C A TCF3 Intron 0.37 TCGA-77-7142-01 19 22784207 22784207 A T AC011467.1 5'Flank 0.26 TCGA-77-7142-01 19 22940446 22940446 A G ZNF99 Silent p.H755H 0.29 TCGA-77-7142-01 19 24309140 24309140 G C ZNF254 Missense_Mutation p.G113A 0.16 tolerated(0.43) benign(0.14) TCGA-77-7142-01 19 3179086 3179086 A T S1PR4 Missense_Mutation p.Y99F 0.21 deleterious(0) probably_damaging(0.999) TCGA-77-7142-01 19 33467343 33467343 G C C19orf40 Missense_Mutation p.E135Q 0.13 tolerated(0.15) possibly_damaging(0.772) TCGA-77-7142-01 19 33467366 33467366 G C C19orf40 Missense_Mutation p.K142N 0.12 tolerated(0.31) possibly_damaging(0.503) TCGA-77-7142-01 19 33467406 33467406 G C C19orf40 Missense_Mutation p.E156Q 0.18 deleterious(0.04) possibly_damaging(0.756) TCGA-77-7142-01 19 33486960 33486960 C T RHPN2 Silent p.L464L 0.07 TCGA-77-7142-01 19 39234597 39234597 G A CAPN12 Missense_Mutation p.A70V 0.36 deleterious(0.01) possibly_damaging(0.796) TCGA-77-7142-01 19 40368741 40368741 C T FCGBP Missense_Mutation p.V4203M 0.08 possibly_damaging(0.867) TCGA-77-7142-01 19 4179209 4179209 C G SIRT6 Missense_Mutation p.R90P 0.22 tolerated(0.1) possibly_damaging(0.869) TCGA-77-7142-01 19 42827780 42827780 G A TMEM145 Missense_Mutation p.V414M 0.17 deleterious(0) possibly_damaging(0.558) TCGA-77-7142-01 19 46973005 46973005 G A PNMAL1 Missense_Mutation p.R430W 0.40 deleterious(0.02) possibly_damaging(0.835) TCGA-77-7142-01 19 51875198 51875198 A G NKG7 Silent p.C145C 0.24 TCGA-77-7142-01 19 52217281 52217281 C T HAS1 Nonsense_Mutation p.W379* 0.20 TCGA-77-7142-01 19 56163905 56163905 C T CCDC106 Silent p.T212T 0.21 TCGA-77-7142-01 19 56515324 56515324 A C NLRP5 Missense_Mutation p.E102A 0.22 tolerated(0.26) benign(0.014) TCGA-77-7142-01 19 57641352 57641352 A G USP29 Missense_Mutation p.I437V 0.42 tolerated(0.35) benign(0.012) TCGA-77-7142-01 19 6753615 6753615 C T SH2D3A Silent p.V474V 0.30 TCGA-77-7142-01 19 7687483 7687483 C T XAB2 Missense_Mutation p.R479H 0.12 deleterious(0) benign(0.133) TCGA-77-7142-01 19 8397911 8397911 C T KANK3 Silent p.L641L 0.50 TCGA-77-7142-01 19 9089961 9089961 C A MUC16 Missense_Mutation p.R618S 0.28 unknown(0) TCGA-77-7142-01 1 104160212 104160212 G T AMY2A Missense_Mutation p.K50N 0.22 tolerated(0.74) benign(0.002) TCGA-77-7142-01 1 12371927 12371927 G A VPS13D Missense_Mutation p.V2294I 0.31 probably_damaging(0.971) TCGA-77-7142-01 1 144825404 144825404 A G NBPF9 Silent p.S451S 0.15 TCGA-77-7142-01 1 148343788 148343788 T - NBPF20 Frame_Shift_Del p.H100Pfs*7 0.12 TCGA-77-7142-01 1 155264343 155264343 C G PKLR Missense_Mutation p.A299P 0.14 deleterious(0.05) benign(0.049) TCGA-77-7142-01 1 158389991 158389991 G C OR10K2 Silent p.L222L 0.28 TCGA-77-7142-01 1 160136317 160136317 G T ATP1A4 Splice_Site p.X350_splice 0.33 TCGA-77-7142-01 1 182571576 182571576 C T RGS16 Missense_Mutation p.D67N 0.26 deleterious(0.04) benign(0.04) TCGA-77-7142-01 1 190067182 190067182 G T BRINP3 Missense_Mutation p.T756K 0.26 tolerated(0.36) benign(0.024) TCGA-77-7142-01 1 192321345 192321345 T C RGS21 Splice_Site p.X85_splice 0.42 TCGA-77-7142-01 1 196715081 196715081 C T CFH Nonsense_Mutation p.R1149* 0.21 TCGA-77-7142-01 1 198682133 198682133 G T PTPRC Missense_Mutation p.G408V 0.26 tolerated(0.31) benign(0.034) TCGA-77-7142-01 1 213415970 213415970 C T RPS6KC1 Silent p.S960S 0.18 TCGA-77-7142-01 1 216595223 216595223 T C USH2A Silent p.V152V 0.14 TCGA-77-7142-01 1 229568333 229568333 G A ACTA1 Silent p.L142L 0.38 TCGA-77-7142-01 1 234529116 234529116 G C TARBP1 Missense_Mutation p.L1518V 0.23 tolerated(0.11) benign(0.412) TCGA-77-7142-01 1 237777504 237777504 G T RYR2 Missense_Mutation p.K1692N 0.16 benign(0.428) TCGA-77-7142-01 1 242511487 242511487 C G PLD5 Missense_Mutation p.A83P 0.20 deleterious(0.04) probably_damaging(0.98) TCGA-77-7142-01 1 247654873 247654873 C T OR2W5 RNA 0.24 TCGA-77-7142-01 1 248637268 248637268 T A OR2T3 Missense_Mutation p.L206Q 0.12 deleterious(0) probably_damaging(0.983) TCGA-77-7142-01 1 32849588 32849588 G A BSDC1 Missense_Mutation p.S84F 0.29 deleterious(0) possibly_damaging(0.823) TCGA-77-7142-01 1 86920929 86920929 C A CLCA2 Missense_Mutation p.Q851K 0.17 tolerated(0.81) benign(0.004) TCGA-77-7142-01 1 92946276 92946276 G T GFI1 Missense_Mutation p.P223H 0.24 deleterious(0.04) benign(0.001) TCGA-77-7142-01 20 1559072 1559072 G A RP4-576H24.4 Silent p.A114A 0.16 TCGA-77-7142-01 20 23345287 23345287 A G GZF1 Silent p.S89S 0.56 TCGA-77-7142-01 20 25057130 25057130 C G VSX1 Missense_Mutation p.A289P 0.51 tolerated(0.13) benign(0.004) TCGA-77-7142-01 20 40033860 40033860 T C CHD6 Silent p.T2507T 0.30 TCGA-77-7142-01 20 56928392 56928392 A T RAB22A Missense_Mutation p.T88S 0.05 tolerated(0.09) probably_damaging(0.981) TCGA-77-7142-01 20 57766942 57766942 C T ZNF831 Missense_Mutation p.L290F 0.08 tolerated(0.19) possibly_damaging(0.873) TCGA-77-7142-01 20 62126304 62126304 C A EEF1A2 Nonsense_Mutation p.E159* 0.19 TCGA-77-7142-01 21 17163894 17163894 C T USP25 Nonsense_Mutation p.R156* 0.12 TCGA-77-7142-01 21 46011314 46011314 C G KRTAP10-6 Missense_Mutation p.R351P 0.27 deleterious(0.01) probably_damaging(0.991) TCGA-77-7142-01 22 18363974 18363974 C T MICAL3 Intron 0.05 TCGA-77-7142-01 22 20784719 20784719 G A SCARF2 Missense_Mutation p.P400L 0.44 tolerated(0.11) benign(0.209) TCGA-77-7142-01 22 27026505 27026505 C G CRYBA4 3'UTR 0.52 TCGA-77-7142-01 22 30683216 30683216 G A GATSL3 Missense_Mutation p.R145C 0.05 deleterious(0) possibly_damaging(0.841) TCGA-77-7142-01 22 32586994 32586994 C A RFPL2 Missense_Mutation p.R301L 0.20 tolerated(0.11) benign(0.07) TCGA-77-7142-01 22 41626185 41626185 C G L3MBTL2 Missense_Mutation p.S683W 0.14 deleterious_low_confidence(0.02) benign(0.208) TCGA-77-7142-01 22 42525912 42525912 C G CYP2D6 Splice_Site p.X61_splice 0.33 TCGA-77-7142-01 22 45689120 45689120 C T UPK3A Silent p.V210V 0.10 TCGA-77-7142-01 2 10560146 10560146 C T HPCAL1 Missense_Mutation p.A88V 0.36 deleterious(0.04) possibly_damaging(0.891) TCGA-77-7142-01 2 110849312 110849312 G C MALL Silent p.A47A 0.21 TCGA-77-7142-01 2 112615883 112615883 C T ANAPC1 Missense_Mutation p.R453H 0.24 tolerated(0.21) possibly_damaging(0.575) TCGA-77-7142-01 2 118575042 118575042 G A DDX18 Silent p.S36S 0.36 TCGA-77-7142-01 2 128075874 128075874 G C MAP3K2 Missense_Mutation p.N355K 0.09 deleterious(0) benign(0.151) TCGA-77-7142-01 2 135893387 135893387 G T RAB3GAP1 Missense_Mutation p.G603V 0.18 tolerated(0.27) benign(0.032) TCGA-77-7142-01 2 141116469 141116469 G T LRP1B Missense_Mutation p.N3726K 0.29 benign(0.403) TCGA-77-7142-01 2 141215122 141215122 T C LRP1B Missense_Mutation p.K3242E 0.35 benign(0.292) TCGA-77-7142-01 2 159488365 159488365 G T PKP4 Missense_Mutation p.R418S 0.44 deleterious(0) benign(0.222) TCGA-77-7142-01 2 162762188 162762188 C T SLC4A10 Silent p.S596S 0.42 TCGA-77-7142-01 2 163291767 163291767 T A KCNH7 Missense_Mutation p.N632I 0.20 deleterious(0) probably_damaging(0.998) TCGA-77-7142-01 2 170099553 170099553 A T LRP2 Missense_Mutation p.C1194S 0.30 probably_damaging(1) TCGA-77-7142-01 2 170147490 170147490 C A LRP2 Missense_Mutation p.V263F 0.11 benign(0.002) TCGA-77-7142-01 2 176973718 176973718 G A HOXD11 Missense_Mutation p.V289M 0.28 deleterious(0.05) probably_damaging(1) TCGA-77-7142-01 2 178977514 178977514 A C RBM45 Silent p.R81R 0.38 TCGA-77-7142-01 2 179432735 179432735 T C TTN Missense_Mutation p.K26042E 0.11 TCGA-77-7142-01 2 179485530 179485530 T C TTN Silent p.A15269A 0.12 TCGA-77-7142-01 2 183597269 183597269 G C DNAJC10 Missense_Mutation p.L283F 0.24 deleterious(0.01) possibly_damaging(0.858) TCGA-77-7142-01 2 220421324 220421324 C T OBSL1 Silent p.G1396G 0.12 TCGA-77-7142-01 2 27693900 27693900 C T IFT172 Missense_Mutation p.M529I 0.40 deleterious(0.01) benign(0) TCGA-77-7142-01 2 50724784 50724784 G A NRXN1 Missense_Mutation p.R896W 0.34 deleterious(0) probably_damaging(0.998) TCGA-77-7142-01 2 54483109 54483109 C T TSPYL6 Silent p.A60A 0.21 TCGA-77-7142-01 2 71185255 71185255 G C ATP6V1B1 Missense_Mutation p.G85A 0.20 deleterious(0.02) possibly_damaging(0.861) TCGA-77-7142-01 2 74907080 74907080 G T SEMA4F Missense_Mutation p.R686L 0.39 deleterious(0.03) benign(0.11) TCGA-77-7142-01 2 79349143 79349143 C A REG1A Missense_Mutation p.N71K 0.28 deleterious(0.01) probably_damaging(0.968) TCGA-77-7142-01 2 86267541 86267541 C A POLR1A Missense_Mutation p.E1238D 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-77-7142-01 2 89475938 89475938 G T IGKV2-24 Missense_Mutation p.N78K 0.21 tolerated(0.11) benign(0.052) TCGA-77-7142-01 3 101136601 101136601 C A SENP7 Missense_Mutation p.W106C 0.20 deleterious(0.01) possibly_damaging(0.847) TCGA-77-7142-01 3 113098254 113098254 C A WDR52 Nonsense_Mutation p.E733* 0.48 TCGA-77-7142-01 3 113955754 113955754 G C ZNF80 Missense_Mutation p.S56R 0.49 deleterious(0.03) benign(0.008) TCGA-77-7142-01 3 114058200 114058200 C T ZBTB20 Silent p.V626V 0.22 TCGA-77-7142-01 3 119222396 119222396 T C TIMMDC1 Silent p.A126A 0.41 TCGA-77-7142-01 3 119892210 119892210 C T GPR156 Silent p.E347E 0.24 TCGA-77-7142-01 3 128628946 128628946 G T ACAD9 Missense_Mutation p.R549L 0.42 deleterious(0) probably_damaging(1) TCGA-77-7142-01 3 130174297 130174297 A G COL6A5 Splice_Site p.X2193_splice 0.48 TCGA-77-7142-01 3 130437309 130437309 C T PIK3R4 Missense_Mutation p.R684H 0.18 tolerated(0.1) benign(0.004) TCGA-77-7142-01 3 140419773 140419773 G T TRIM42 Missense_Mutation p.G710V 0.66 deleterious(0) probably_damaging(0.989) TCGA-77-7142-01 3 142496597 142496597 G T TRPC1 Silent p.V252V 0.08 TCGA-77-7142-01 3 14563213 14563213 C A GRIP2 RNA 0.36 TCGA-77-7142-01 3 15124031 15124031 C G ZFYVE20 Missense_Mutation p.R228P 0.25 deleterious(0) probably_damaging(0.998) TCGA-77-7142-01 3 156009914 156009914 A G KCNAB1 Intron 0.05 TCGA-77-7142-01 3 159713367 159713367 C T IL12A 3'UTR 0.10 TCGA-77-7142-01 3 168269679 168269679 G A MIR551B RNA 0.08 TCGA-77-7142-01 3 170800160 170800160 C G TNIK Missense_Mutation p.E1065Q 0.08 deleterious(0) probably_damaging(0.997) TCGA-77-7142-01 3 186395277 186395277 C A HRG Missense_Mutation p.H395N 0.21 tolerated(0.25) benign(0.107) TCGA-77-7142-01 3 194081255 194081255 A T LRRC15 Missense_Mutation p.V179E 0.18 tolerated(0.2) benign(0.113) TCGA-77-7142-01 3 197616570 197616570 G A IQCG Nonsense_Mutation p.R405* 0.07 TCGA-77-7142-01 3 19921189 19921189 C T EFHB Silent p.E812E 0.39 TCGA-77-7142-01 3 41746597 41746597 A T ULK4 Missense_Mutation p.F911L 0.33 tolerated(0.74) benign(0.002) TCGA-77-7142-01 3 50340156 50340156 G A HYAL1 Nonsense_Mutation p.Q78* 0.22 TCGA-77-7142-01 3 53275207 53275207 C A TKT Nonsense_Mutation p.E94* 0.55 TCGA-77-7142-01 3 53914027 53914027 C G ACTR8 Missense_Mutation p.R78T 0.36 deleterious(0) probably_damaging(0.955) TCGA-77-7142-01 4 107258049 107258049 A G AIMP1 Silent p.L233L 0.29 TCGA-77-7142-01 4 122774137 122774137 T A BBS7 Missense_Mutation p.N275Y 0.47 deleterious(0) benign(0.218) TCGA-77-7142-01 4 143130158 143130158 A T INPP4B Silent p.L286L 0.26 TCGA-77-7142-01 4 147561106 147561106 C A POU4F2 Missense_Mutation p.H126N 0.40 deleterious_low_confidence(0.01) benign(0.107) TCGA-77-7142-01 4 166915613 166915613 G A TLL1 Missense_Mutation p.A148T 0.40 deleterious(0.02) probably_damaging(0.995) TCGA-77-7142-01 4 183609400 183609400 C A TENM3 Missense_Mutation p.A706D 0.48 tolerated(0.22) benign(0.025) TCGA-77-7142-01 4 48139507 48139507 C A TEC Nonsense_Mutation p.G608* 0.35 TCGA-77-7142-01 4 68539427 68539427 G A UBA6 Silent p.C178C 0.32 TCGA-77-7142-01 4 69962808 69962808 T C UGT2B7 Silent p.P190P 0.32 TCGA-77-7142-01 4 94006180 94006180 G T GRID2 Silent p.L93L 0.26 TCGA-77-7142-01 5 118183838 118183838 C A DTWD2 Nonsense_Mutation p.E225* 0.40 TCGA-77-7142-01 5 118183839 118183839 C T DTWD2 Silent p.L224L 0.40 TCGA-77-7142-01 5 129243987 129243987 T A CHSY3 Missense_Mutation p.H340Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-77-7142-01 5 129243988 129243988 G T CHSY3 Nonsense_Mutation p.E341* 0.34 TCGA-77-7142-01 5 132412464 132412464 G A HSPA4 Missense_Mutation p.R261H 0.42 deleterious(0) probably_damaging(1) TCGA-77-7142-01 5 139751085 139751091 ACCTGCT - SLC4A9 Frame_Shift_Del p.L874Sfs*7 0.09 TCGA-77-7142-01 5 140559700 140559700 G T PCDHB8 Missense_Mutation p.L695F 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-77-7142-01 5 140559701 140559701 G A PCDHB8 Missense_Mutation p.A696T 0.24 deleterious_low_confidence(0.03) benign(0.41) TCGA-77-7142-01 5 140740669 140740669 G C PCDHGB2 Missense_Mutation p.D323H 0.14 deleterious(0) probably_damaging(1) TCGA-77-7142-01 5 148709267 148709267 G A AFAP1L1 Missense_Mutation p.E617K 0.24 tolerated(0.06) probably_damaging(0.975) TCGA-77-7142-01 5 154394257 154394257 G T KIF4B Missense_Mutation p.D280Y 0.23 deleterious(0.05) possibly_damaging(0.612) TCGA-77-7142-01 5 161117228 161117228 T A GABRA6 Missense_Mutation p.V232D 0.21 deleterious(0) probably_damaging(0.999) TCGA-77-7142-01 5 170610387 170610387 G T RANBP17 Missense_Mutation p.R664L 0.16 deleterious(0) benign(0.264) TCGA-77-7142-01 5 19838868 19838868 C A CDH18 Missense_Mutation p.K76N 0.33 deleterious(0.02) possibly_damaging(0.788) TCGA-77-7142-01 5 23522995 23522995 G T PRDM9 Splice_Site p.X294_splice 0.50 TCGA-77-7142-01 5 33561153 33561153 C A ADAMTS12 Missense_Mutation p.W1368C 0.14 deleterious(0) probably_damaging(0.999) TCGA-77-7142-01 5 39394385 39394385 T A DAB2 Missense_Mutation p.Q13L 0.07 deleterious(0) probably_damaging(0.997) TCGA-77-7142-01 5 70848955 70848955 A T BDP1 Silent p.P2336P 0.26 TCGA-77-7142-01 5 86629102 86629102 C T RASA1 Missense_Mutation p.R283C 0.08 deleterious(0) probably_damaging(0.988) TCGA-77-7142-01 6 127901578 127901578 G T C6orf58 Missense_Mutation p.W186L 0.28 deleterious(0) probably_damaging(1) TCGA-77-7142-01 6 133094078 133094078 T C SLC18B1 Intron 0.26 TCGA-77-7142-01 6 136934373 136934373 C T MAP3K5 Missense_Mutation p.R767H 0.12 deleterious(0.02) probably_damaging(0.996) TCGA-77-7142-01 6 151766721 151766721 C G RMND1 Missense_Mutation p.D76H 0.31 tolerated_low_confidence(0.13) benign(0.129) TCGA-77-7142-01 6 153323585 153323585 C G MTRF1L Missense_Mutation p.R79P 0.24 deleterious(0.03) possibly_damaging(0.586) TCGA-77-7142-01 6 25652698 25652698 C G SCGN Missense_Mutation p.R23G 0.35 deleterious(0.02) benign(0.388) TCGA-77-7142-01 6 32165326 32165326 T A NOTCH4 Missense_Mutation p.Q1601L 0.39 tolerated(0.31) benign(0.021) TCGA-77-7142-01 6 43250483 43250483 C T TTBK1 Missense_Mutation p.P669S 0.28 benign(0.085) TCGA-77-7142-01 6 55620290 55620290 C A BMP5 3'UTR 0.50 TCGA-77-7142-01 6 56484433 56484433 G T DST Intron 0.04 TCGA-77-7142-01 6 57398214 57398214 G T PRIM2 Missense_Mutation p.R306L 0.12 deleterious(0.03) possibly_damaging(0.674) TCGA-77-7142-01 6 84669596 84669596 A G CYB5R4 Silent p.%3D 0.46 TCGA-77-7142-01 6 87725710 87725710 C A HTR1E Silent p.R220R 0.09 TCGA-77-7142-01 6 96651205 96651205 T A FUT9 Silent p.T58T 0.29 TCGA-77-7142-01 6 96974239 96974239 G T UFL1 Missense_Mutation p.L131F 0.16 deleterious(0) probably_damaging(1) TCGA-77-7142-01 7 100680211 100680211 T C MUC17 Silent p.P1838P 0.17 TCGA-77-7142-01 7 104717612 104717612 A G KMT2E Missense_Mutation p.N324S 0.39 tolerated(0.78) benign(0.292) TCGA-77-7142-01 7 107559538 107559538 A G DLD Silent p.A486A 0.26 TCGA-77-7142-01 7 121756689 121756689 C A AASS Missense_Mutation p.D298Y 0.28 deleterious(0.01) possibly_damaging(0.853) TCGA-77-7142-01 7 123296276 123296276 G C LMOD2 Missense_Mutation p.G87R 0.22 tolerated(0.14) probably_damaging(1) TCGA-77-7142-01 7 134931175 134931175 C T STRA8 Silent p.L151L 0.29 TCGA-77-7142-01 7 142640105 142640105 C G KEL Missense_Mutation p.D600H 0.40 deleterious(0.01) probably_damaging(0.98) TCGA-77-7142-01 7 149559133 149559133 G T ZNF862 Missense_Mutation p.A962S 0.47 tolerated(0.26) benign(0.091) TCGA-77-7142-01 7 33312730 33312730 G T BBS9 Missense_Mutation p.C270F 0.32 deleterious(0) benign(0.425) TCGA-77-7142-01 7 71177039 71177039 C G WBSCR17 Missense_Mutation p.L569V 0.15 deleterious(0) probably_damaging(0.987) TCGA-77-7142-01 7 86394573 86394573 G T GRM3 Missense_Mutation p.D38Y 0.30 deleterious(0) probably_damaging(1) TCGA-77-7142-01 7 88423581 88423581 G C C7orf62 Missense_Mutation p.P226A 0.32 deleterious(0.02) possibly_damaging(0.872) TCGA-77-7142-01 7 98527698 98527698 G T TRRAP Missense_Mutation p.D1088Y 0.32 probably_damaging(0.997) TCGA-77-7142-01 8 103572701 103572701 A G ODF1 Silent p.R114R 0.12 TCGA-77-7142-01 8 106814172 106814172 T C ZFPM2 Missense_Mutation p.L621P 0.22 tolerated(0.09) benign(0.035) TCGA-77-7142-01 8 116617054 116617054 G A TRPS1 Missense_Mutation p.S381F 0.35 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-77-7142-01 8 120575123 120575123 G A ENPP2 Missense_Mutation p.R851W 0.25 deleterious(0) probably_damaging(0.999) TCGA-77-7142-01 8 145141078 145141078 C T GPAA1 3'UTR 0.19 TCGA-77-7142-01 8 67546944 67546944 T G VCPIP1 Missense_Mutation p.Q1154P 0.13 deleterious_low_confidence(0.01) benign(0) TCGA-77-7142-01 8 76459899 76459899 C T HNF4G Missense_Mutation p.A112V 0.17 tolerated(0.11) possibly_damaging(0.787) TCGA-77-7142-01 8 82670444 82670444 G A CHMP4C Missense_Mutation p.R184H 0.16 tolerated(0.13) benign(0.035) TCGA-77-7142-01 9 107332158 107332179 CCTTCTCCACCTGCTCAGCCCA - OR13C8 Frame_Shift_Del p.F238* 0.17 TCGA-77-7142-01 9 125759581 125759581 C T RABGAP1 Missense_Mutation p.T382M 0.19 deleterious(0.01) probably_damaging(0.916) TCGA-77-7142-01 9 131583095 131583095 C T ENDOG Silent p.V193V 0.42 TCGA-77-7142-01 9 136444236 136444236 C A FAM163B Missense_Mutation p.G137C 0.14 deleterious(0.05) benign(0.393) TCGA-77-7142-01 9 14846032 14846032 A G FREM1 Missense_Mutation p.V440A 0.46 deleterious(0) probably_damaging(0.947) TCGA-77-7142-01 9 35846484 35846484 C T TMEM8B Silent p.N172N 0.61 TCGA-77-7142-01 9 84530568 84530568 G A SPATA31D5P RNA 0.42 TCGA-77-7142-01 9 87635171 87635171 C T NTRK2 Silent p.I741I 0.56 TCGA-77-7142-01 9 95237107 95237107 C T ASPN Missense_Mutation p.A25T 0.27 tolerated(0.57) benign(0.001) TCGA-77-7142-01 X 10085366 10085366 C T WWC3 Nonsense_Mutation p.R423* 0.14 TCGA-77-7142-01 X 11162309 11162309 G T ARHGAP6 Missense_Mutation p.T656K 0.07 deleterious(0.04) possibly_damaging(0.696) TCGA-77-7142-01 X 11782048 11782048 G T MSL3 Missense_Mutation p.S300I 0.11 tolerated(0.15) benign(0.007) TCGA-77-7142-01 X 125298662 125298662 C T DCAF12L2 Missense_Mutation p.V416I 0.40 tolerated(0.38) benign(0.001) TCGA-77-7142-01 X 12939610 12939610 G A TLR8 Silent p.L817L 0.23 TCGA-77-7142-01 X 2406999 2406999 G A ZBED1 Missense_Mutation p.L588F 0.20 deleterious(0) probably_damaging(1) TCGA-77-7142-01 X 3241976 3241976 T A MXRA5 Missense_Mutation p.T584S 0.25 tolerated(0.17) benign(0.401) TCGA-77-7142-01 X 37026509 37026509 G T FAM47C Missense_Mutation p.R9L 0.19 tolerated(0.05) possibly_damaging(0.841) TCGA-77-7142-01 X 37655332 37655333 CT A CYBB Frame_Shift_Del p.W206Gfs*8 0.18 TCGA-77-7142-01 X 50213287 50213287 G T DGKK RNA 0.16 TCGA-77-7142-01 X 70787506 70787506 C T OGT Nonsense_Mutation p.Q916* 0.15 TCGA-77-7142-01 X 71416699 71416699 G T PIN4 Missense_Mutation p.G86V 0.32 deleterious(0) probably_damaging(0.964) TCGA-77-7142-01 X 71522015 71522015 T A CITED1 Missense_Mutation p.Y73F 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-77-7142-01 X 73063727 73063727 A G XIST RNA 0.32 TCGA-77-7142-01 X 73071924 73071924 G A XIST RNA 0.40 TCGA-77-7142-01 X 83129283 83129283 G T CYLC1 Nonsense_Mutation p.E523* 0.56 TCGA-77-7142-01 X 84363336 84363336 C A SATL1 Missense_Mutation p.M213I 0.14 tolerated(0.6) benign(0.001) TCGA-77-7142-01 X 92927229 92927229 C G NAP1L3 Missense_Mutation p.E359Q 0.07 deleterious(0.02) probably_damaging(0.913) TCGA-77-7142-01 X 9905648 9905648 C A SHROOM2 Missense_Mutation p.D1354E 0.21 tolerated(0.15) probably_damaging(0.995) TCGA-77-7335-01 10 104170638 104170638 C A PSD Missense_Mutation p.D690Y 0.23 deleterious(0) probably_damaging(1) TCGA-77-7335-01 10 104170839 104170839 C T PSD Silent p.L659L 0.17 TCGA-77-7335-01 10 104171956 104171956 C G PSD Missense_Mutation p.E593Q 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-77-7335-01 10 116055900 116055900 G C AFAP1L2 Intron 0.17 TCGA-77-7335-01 10 13375967 13375967 C T SEPHS1 Missense_Mutation p.R137K 0.16 deleterious(0.02) probably_damaging(0.959) TCGA-77-7335-01 10 15702901 15702901 T A ITGA8 Nonsense_Mutation p.R290* 0.10 TCGA-77-7335-01 10 5979221 5979221 C T FBXO18 Missense_Mutation p.A1088V 0.22 deleterious(0.01) probably_damaging(0.988) TCGA-77-7335-01 10 96448021 96448021 A G CYP2C18 Silent p.R157R 0.15 TCGA-77-7335-01 11 1157564 1157564 C G MUC5AC Missense_Mutation p.Q249E 0.39 tolerated(0.73) benign(0.001) TCGA-77-7335-01 11 116691451 116691451 G C APOA4 3'UTR 0.13 TCGA-77-7335-01 11 116691500 116691500 G C APOA4 3'UTR 0.12 TCGA-77-7335-01 11 117279622 117279622 C T CEP164 Missense_Mutation p.T1209I 0.15 tolerated(0.05) benign(0.052) TCGA-77-7335-01 11 119215067 119215067 A T MFRP Silent p.T311T 0.39 TCGA-77-7335-01 11 134095013 134095013 T C NCAPD3 5'Flank 0.19 TCGA-77-7335-01 11 20649524 20649524 A G SLC6A5 Splice_Site p.X466_splice 0.25 TCGA-77-7335-01 11 31823138 31823138 C A PAX6 Missense_Mutation p.G124W 0.25 deleterious(0) probably_damaging(0.996) TCGA-77-7335-01 11 32635724 32635724 C A CCDC73 Missense_Mutation p.A714S 0.12 tolerated(0.19) benign(0.097) TCGA-77-7335-01 11 55761643 55761643 C G OR5F1 Missense_Mutation p.L153F 0.19 tolerated(1) benign(0.042) TCGA-77-7335-01 11 57182524 57182524 G C SLC43A3 Missense_Mutation p.F275L 0.15 tolerated(1) benign(0.002) TCGA-77-7335-01 11 59271777 59271777 C A OR4D11 Missense_Mutation p.H243Q 0.16 tolerated(0.09) probably_damaging(0.997) TCGA-77-7335-01 11 65661516 65661516 C T FOSL1 Missense_Mutation p.R125Q 0.29 deleterious(0) probably_damaging(0.996) TCGA-77-7335-01 11 6640612 6640612 C T TPP1 Intron 0.23 TCGA-77-7335-01 11 67433592 67433592 C A ALDH3B2 Splice_Site p.X107_splice 0.21 TCGA-77-7335-01 11 68305274 68305274 C T PPP6R3 Silent p.L48L 0.23 TCGA-77-7335-01 11 6891104 6891104 C A OR10A2 Missense_Mutation p.P40H 0.14 deleterious(0.05) benign(0.013) TCGA-77-7335-01 11 76234246 76234246 G A C11orf30 Missense_Mutation p.V578M 0.28 deleterious(0) probably_damaging(0.971) TCGA-77-7335-01 11 8752757 8752757 C T ST5 Splice_Site p.X27_splice 0.40 TCGA-77-7335-01 11 89392779 89392779 G T FOLH1B RNA 0.12 TCGA-77-7335-01 11 89392780 89392780 G T FOLH1B RNA 0.12 TCGA-77-7335-01 11 95712552 95712552 G A MAML2 Nonsense_Mutation p.Q1011* 0.22 TCGA-77-7335-01 12 10586439 10586439 C A KLRC2 Missense_Mutation p.C145F 0.33 deleterious(0) probably_damaging(0.999) TCGA-77-7335-01 12 120899834 120899834 G C SRSF9 Missense_Mutation p.F218L 0.16 tolerated_low_confidence(0.08) benign(0.012) TCGA-77-7335-01 12 126128820 126128820 A C TMEM132B Missense_Mutation p.N541H 0.18 tolerated(0.05) benign(0.126) TCGA-77-7335-01 12 129431972 129431972 T A GLT1D1 Missense_Mutation p.V170D 0.18 deleterious(0) possibly_damaging(0.683) TCGA-77-7335-01 12 130184419 130184419 C A TMEM132D Nonsense_Mutation p.G302* 0.18 TCGA-77-7335-01 12 133306612 133306612 C T ANKLE2 Silent p.A712A 0.20 TCGA-77-7335-01 12 20864443 20864443 C A SLCO1C1 Missense_Mutation p.N176K 0.20 tolerated(1) benign(0.004) TCGA-77-7335-01 12 58144829 58144829 G A CDK4 Silent p.A133A 0.13 TCGA-77-7335-01 12 71002927 71002927 G T PTPRB Missense_Mutation p.Q301K 0.11 tolerated(1) benign(0.001) TCGA-77-7335-01 12 78334883 78334883 C A NAV3 Silent p.I128I 0.21 TCGA-77-7335-01 12 78513134 78513134 C A NAV3 Missense_Mutation p.P1053H 0.21 deleterious(0.01) probably_damaging(1) TCGA-77-7335-01 12 81610684 81610684 T C ACSS3 Silent p.T453T 0.16 TCGA-77-7335-01 12 81688639 81688639 G T PPFIA2 Missense_Mutation p.P967H 0.16 deleterious(0.01) probably_damaging(0.991) TCGA-77-7335-01 12 83290168 83290168 C G TMTC2 Missense_Mutation p.T409R 0.09 deleterious(0) possibly_damaging(0.809) TCGA-77-7335-01 12 85441038 85441038 A G LRRIQ1 Missense_Mutation p.I156M 0.28 tolerated(0.15) benign(0.346) TCGA-77-7335-01 12 97331166 97331166 A T NEDD1 Missense_Mutation p.K378I 0.26 deleterious(0.01) probably_damaging(0.937) TCGA-77-7335-01 12 98850335 98850335 G A SLC9A7P1 RNA 0.25 TCGA-77-7335-01 12 98991683 98991683 T G SLC25A3 Missense_Mutation p.L111R 0.33 tolerated(0.1) possibly_damaging(0.756) TCGA-77-7335-01 13 113973954 113973954 G C LAMP1 Missense_Mutation p.E245Q 0.17 tolerated(0.57) benign(0.043) TCGA-77-7335-01 13 26112187 26112187 T A ATP8A2 Missense_Mutation p.L190Q 0.20 deleterious(0.01) probably_damaging(0.979) TCGA-77-7335-01 13 28130393 28130393 C T LNX2 Missense_Mutation p.R509Q 0.26 tolerated(0.06) probably_damaging(0.999) TCGA-77-7335-01 13 33692315 33692315 T G STARD13 Missense_Mutation p.Y723S 0.19 deleterious(0) probably_damaging(0.993) TCGA-77-7335-01 13 73649905 73649905 G C KLF5 Missense_Mutation p.E419Q 0.24 deleterious(0) probably_damaging(0.988) TCGA-77-7335-01 14 101513664 101513664 G C MIR539 RNA 0.16 TCGA-77-7335-01 14 106110054 106110054 C G IGHG2 Silent p.V188V 0.15 TCGA-77-7335-01 14 20389683 20389683 G A OR4K5 Silent p.L306L 0.13 TCGA-77-7335-01 14 32563038 32563038 G T ARHGAP5 Missense_Mutation p.D1055Y 0.16 deleterious(0.03) probably_damaging(0.942) TCGA-77-7335-01 14 33204914 33204914 G T AKAP6 Silent p.S1066S 0.16 TCGA-77-7335-01 14 73440836 73440836 C T ZFYVE1 Missense_Mutation p.V685M 0.12 deleterious(0.03) possibly_damaging(0.781) TCGA-77-7335-01 14 74086024 74086024 A T ACOT6 Silent p.T35T 0.18 TCGA-77-7335-01 14 89307238 89307238 A G TTC8 Missense_Mutation p.T99A 0.19 tolerated(0.11) benign(0.002) TCGA-77-7335-01 15 20488872 20488872 G T CHEK2P2 RNA 0.09 TCGA-77-7335-01 15 31355407 31355407 C T TRPM1 Silent p.E310E 0.24 TCGA-77-7335-01 15 40914725 40914725 T A CASC5 Missense_Mutation p.C781S 0.16 tolerated(0.21) benign(0.214) TCGA-77-7335-01 15 42714711 42714711 G C ZNF106 Silent p.V1764V 0.13 TCGA-77-7335-01 15 49611855 49611855 G A GALK2 Missense_Mutation p.R341Q 0.33 deleterious(0) probably_damaging(1) TCGA-77-7335-01 15 50769529 50769529 A G USP8 Missense_Mutation p.T351A 0.20 tolerated(0.74) benign(0) TCGA-77-7335-01 15 50929679 50929679 C T TRPM7 Missense_Mutation p.A258T 0.08 tolerated(0.2) benign(0.157) TCGA-77-7335-01 15 52652234 52652234 G A MYO5A Silent p.S1118S 0.30 TCGA-77-7335-01 15 54586116 54586116 G T UNC13C Missense_Mutation p.R1281L 0.18 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-77-7335-01 15 74574139 74574139 C T CCDC33 Silent p.I348I 0.15 TCGA-77-7335-01 15 75688603 75688603 T A SIN3A Nonsense_Mutation p.K697* 0.24 TCGA-77-7335-01 15 79317794 79317794 C T RASGRF1 Missense_Mutation p.M468I 0.25 tolerated(0.4) benign(0.038) TCGA-77-7335-01 16 11000892 11000892 T A CIITA Missense_Mutation p.C515S 0.14 tolerated(0.25) benign(0.014) TCGA-77-7335-01 16 1254246 1254246 C T CACNA1H Missense_Mutation p.R747C 0.33 tolerated(0.08) benign(0.01) TCGA-77-7335-01 16 1544471 1544471 C T TELO2 Silent p.L63L 0.15 TCGA-77-7335-01 16 16184382 16184382 G A ABCC1 Missense_Mutation p.A861T 0.21 deleterious(0.01) benign(0.064) TCGA-77-7335-01 16 3065782 3065782 G T CLDN6 Missense_Mutation p.R81S 0.13 deleterious(0) probably_damaging(1) TCGA-77-7335-01 16 3434804 3434804 G A ZSCAN32 Nonsense_Mutation p.Q85* 0.17 TCGA-77-7335-01 16 3434805 3434805 C G ZSCAN32 Missense_Mutation p.E84D 0.17 tolerated(0.08) benign(0) TCGA-77-7335-01 16 51173840 51173840 G T SALL1 Missense_Mutation p.Q765K 0.24 deleterious(0) probably_damaging(0.998) TCGA-77-7335-01 16 602418 602418 G A CAPN15 Silent p.A875A 0.27 TCGA-77-7335-01 16 67320222 67320222 C T PLEKHG4 Missense_Mutation p.R830C 0.17 tolerated(0.08) benign(0.052) TCGA-77-7335-01 16 69727974 69727974 C T NFAT5 Missense_Mutation p.L1416F 0.09 possibly_damaging(0.548) TCGA-77-7335-01 16 70605767 70605767 C T SF3B3 3'UTR 0.23 TCGA-77-7335-01 16 70989299 70989299 C A HYDIN Missense_Mutation p.V2099L 0.16 benign(0.001) TCGA-77-7335-01 16 72158747 72158747 C T PMFBP1 Silent p.L836L 0.20 TCGA-77-7335-01 16 77896771 77896771 G A VAT1L Missense_Mutation p.V236M 0.25 deleterious(0.02) benign(0.179) TCGA-77-7335-01 17 1557084 1557084 C G PRPF8 Missense_Mutation p.E2072Q 0.25 deleterious(0) benign(0.157) TCGA-77-7335-01 17 26086045 26086045 G A NOS2 Silent p.L1072L 0.09 TCGA-77-7335-01 17 34893435 34893435 A G PIGW Missense_Mutation p.Y162C 0.15 deleterious(0) probably_damaging(0.993) TCGA-77-7335-01 17 4712843 4712843 G A PLD2 Missense_Mutation p.G204E 0.34 deleterious(0) probably_damaging(1) TCGA-77-7335-01 17 4805647 4805647 C T C17orf107 3'UTR 0.27 TCGA-77-7335-01 17 48165112 48165112 C G ITGA3 Missense_Mutation p.S975C 0.14 deleterious(0.01) possibly_damaging(0.905) TCGA-77-7335-01 17 59147259 59147259 C T BCAS3 Intron 0.25 TCGA-77-7335-01 17 61972365 61972365 G A CSH1 3'UTR 0.19 TCGA-77-7335-01 17 63049832 63049832 C A GNA13 Missense_Mutation p.V100F 0.18 deleterious(0) probably_damaging(0.977) TCGA-77-7335-01 17 7577580 7577580 T C TP53 Missense_Mutation p.Y234C 0.35 deleterious(0) probably_damaging(0.992) TCGA-77-7335-01 17 7984329 7984329 G C AC129492.6 3'UTR 0.29 TCGA-77-7335-01 18 13742599 13742599 G T RNMT Nonsense_Mutation p.E363* 0.13 TCGA-77-7335-01 18 50683790 50683790 C A DCC Missense_Mutation p.S442R 0.15 deleterious(0) probably_damaging(0.99) TCGA-77-7335-01 18 51851234 51851234 T G STARD6 Missense_Mutation p.Y164S 0.21 tolerated(0.1) possibly_damaging(0.53) TCGA-77-7335-01 18 67993290 67993290 C G SOCS6 Missense_Mutation p.I462M 0.19 tolerated(0.29) benign(0.005) TCGA-77-7335-01 18 6942004 6942004 G A LAMA1 3'UTR 0.11 TCGA-77-7335-01 18 74778306 74778306 C G MBP Missense_Mutation p.K29N 0.11 tolerated_low_confidence(0.16) benign(0.082) TCGA-77-7335-01 19 11327907 11327907 C T DOCK6 Silent p.T1237T 0.24 TCGA-77-7335-01 19 20808397 20808397 G T ZNF626 Missense_Mutation p.Q96K 0.16 deleterious(0.02) benign(0.115) TCGA-77-7335-01 19 30936242 30936242 G A ZNF536 Silent p.Q591Q 0.17 TCGA-77-7335-01 19 33600846 33600846 C T GPATCH1 Silent p.F503F 0.15 TCGA-77-7335-01 19 36370039 36370039 G A APLP1 Missense_Mutation p.G593R 0.17 deleterious(0.04) probably_damaging(0.993) TCGA-77-7335-01 19 39406283 39406283 C T SARS2 Missense_Mutation p.R509Q 0.17 tolerated(1) benign(0.002) TCGA-77-7335-01 19 51920149 51920149 C A SIGLEC10 Silent p.P159P 0.38 TCGA-77-7335-01 19 52869014 52869014 C A ZNF610 Missense_Mutation p.T128N 0.13 tolerated(0.14) benign(0.002) TCGA-77-7335-01 19 53740488 53740488 C T ZNF677 Missense_Mutation p.E498K 0.08 tolerated(0.42) benign(0.008) TCGA-77-7335-01 19 55912864 55912864 G A UBE2S Silent p.R203R 0.19 TCGA-77-7335-01 19 9070952 9070952 G T MUC16 Silent p.T5498T 0.26 TCGA-77-7335-01 19 9721932 9721932 T G ZNF561 Silent p.T135T 0.19 TCGA-77-7335-01 1 1159234 1159234 G A SDF4 Silent p.R147R 0.26 TCGA-77-7335-01 1 12943129 12943129 G A PRAMEF4 Silent p.T29T 0.20 TCGA-77-7335-01 1 145459765 145459765 G A POLR3GL Missense_Mutation p.P48L 0.15 deleterious(0) probably_damaging(0.916) TCGA-77-7335-01 1 154842038 154842038 G A KCNN3 Missense_Mutation p.H135Y 0.20 tolerated_low_confidence(0.28) possibly_damaging(0.888) TCGA-77-7335-01 1 156616805 156616805 G C BCAN Missense_Mutation p.E102Q 0.08 deleterious(0.01) probably_damaging(0.948) TCGA-77-7335-01 1 156708380 156708380 G - MRPL24 Frame_Shift_Del p.R40Gfs*26 0.20 TCGA-77-7335-01 1 167745392 167745392 G A MPZL1 Missense_Mutation p.G233R 0.17 tolerated(0.21) benign(0.017) TCGA-77-7335-01 1 179620089 179620089 G A TDRD5 Missense_Mutation p.G630R 0.20 deleterious(0) probably_damaging(0.966) TCGA-77-7335-01 1 190067703 190067703 C A BRINP3 Missense_Mutation p.E582D 0.19 tolerated(0.11) probably_damaging(0.978) TCGA-77-7335-01 1 198721885 198721885 C G PTPRC Missense_Mutation p.L1165V 0.19 tolerated(0.23) benign(0.26) TCGA-77-7335-01 1 215987086 215987086 A C USH2A Missense_Mutation p.I3244S 0.27 benign(0.184) TCGA-77-7335-01 1 224380184 224380184 T G DEGS1 3'UTR 0.39 TCGA-77-7335-01 1 231406660 231406660 C T GNPAT Missense_Mutation p.S479L 0.18 deleterious(0.03) benign(0.003) TCGA-77-7335-01 1 23420867 23420867 C G LUZP1 5'UTR 0.31 TCGA-77-7335-01 1 248343566 248343566 T A OR2M2 Silent p.S93S 0.21 TCGA-77-7335-01 1 38301384 38301384 G A MTF1 Missense_Mutation p.A271V 0.20 deleterious(0.03) probably_damaging(0.985) TCGA-77-7335-01 1 55472792 55472792 T A BSND Missense_Mutation p.L132Q 0.24 deleterious(0.04) probably_damaging(1) TCGA-77-7335-01 1 75039113 75039113 G T C1orf173 Missense_Mutation p.Q761K 0.17 deleterious(0.02) benign(0.225) TCGA-77-7335-01 1 75065536 75065536 C T C1orf173 Missense_Mutation p.M523I 0.12 deleterious(0.05) possibly_damaging(0.692) TCGA-77-7335-01 1 92442734 92442734 G C BRDT Missense_Mutation p.K251N 0.37 deleterious(0.03) benign(0.005) TCGA-77-7335-01 20 1161702 1161702 G A TMEM74B Silent p.G187G 0.22 TCGA-77-7335-01 20 2968700 2968700 G C PTPRA Missense_Mutation p.G184R 0.20 tolerated(0.38) probably_damaging(1) TCGA-77-7335-01 20 30556213 30556213 G A XKR7 Missense_Mutation p.A79T 0.21 tolerated(0.08) probably_damaging(1) TCGA-77-7335-01 20 37353313 37353313 C G SLC32A1 5'UTR 0.23 TCGA-77-7335-01 20 44507208 44507208 G T ZSWIM3 Missense_Mutation p.V671L 0.20 deleterious(0.01) benign(0.197) TCGA-77-7335-01 20 47991139 47991139 G A KCNB1 Silent p.L320L 0.27 TCGA-77-7335-01 20 56179575 56179575 C T ZBP1 3'UTR 0.18 TCGA-77-7335-01 20 8719934 8719934 G C PLCB1 Missense_Mutation p.L745F 0.07 deleterious(0) probably_damaging(0.968) TCGA-77-7335-01 21 33825794 33825794 G C EVA1C Missense_Mutation p.C112S 0.33 deleterious(0) probably_damaging(0.992) TCGA-77-7335-01 21 33840135 33840135 G C EVA1C Missense_Mutation p.A205P 0.27 tolerated(0.28) benign(0.018) TCGA-77-7335-01 21 38444947 38444947 T C PIGP 5'UTR 0.39 TCGA-77-7335-01 22 23135269 23135269 C G IGLV2-11 Missense_Mutation p.T44S 0.19 tolerated_low_confidence(1) benign(0.054) TCGA-77-7335-01 22 23135470 23135470 C T IGLV2-11 Missense_Mutation p.S111L 0.17 deleterious_low_confidence(0.01) benign(0.397) TCGA-77-7335-01 22 24106849 24106849 C A C22orf15 Missense_Mutation p.R92S 0.25 tolerated(0.42) possibly_damaging(0.469) TCGA-77-7335-01 22 39772180 39772180 C A SYNGR1 Missense_Mutation p.S154Y 0.16 deleterious(0) probably_damaging(0.992) TCGA-77-7335-01 22 43539196 43539196 C T MCAT Silent p.A53A 0.23 TCGA-77-7335-01 2 11774311 11774311 C T GREB1 Silent p.I1682I 0.08 TCGA-77-7335-01 2 121726480 121726480 G T GLI2 Silent p.A278A 0.47 TCGA-77-7335-01 2 121745926 121745926 G A GLI2 Silent p.T812T 0.38 TCGA-77-7335-01 2 15770208 15770208 C T DDX1 Missense_Mutation p.T689I 0.32 tolerated(0.1) benign(0.004) TCGA-77-7335-01 2 163002103 163002103 G A GCG Silent p.G113G 0.22 TCGA-77-7335-01 2 163123637 163123637 A G IFIH1 3'UTR 0.30 TCGA-77-7335-01 2 163250953 163250953 C A KCNH7 Missense_Mutation p.D886Y 0.51 tolerated(0.66) benign(0.002) TCGA-77-7335-01 2 166231281 166231281 C T SCN2A Silent p.I1353I 0.17 TCGA-77-7335-01 2 166535416 166535416 C A CSRNP3 Missense_Mutation p.P304H 0.48 deleterious(0.02) benign(0.391) TCGA-77-7335-01 2 176996067 176996067 A G HOXD8 Silent p.G200G 0.41 TCGA-77-7335-01 2 179418491 179418491 G C TTN Silent p.T29747T 0.13 TCGA-77-7335-01 2 179553413 179553413 G C TTN Missense_Mutation p.R10730G 0.43 TCGA-77-7335-01 2 179588590 179588590 A G TTN Silent p.T7132T 0.45 TCGA-77-7335-01 2 179742739 179742739 A T CCDC141 Missense_Mutation p.S617R 0.48 tolerated(0.38) possibly_damaging(0.759) TCGA-77-7335-01 2 185802074 185802074 G C ZNF804A Missense_Mutation p.D651H 0.35 deleterious(0.04) probably_damaging(0.993) TCGA-77-7335-01 2 20458086 20458086 C G PUM2 Missense_Mutation p.G801A 0.24 deleterious(0) probably_damaging(0.999) TCGA-77-7335-01 2 217342936 217342936 C G SMARCAL1 Missense_Mutation p.Q847E 0.22 deleterious(0.01) benign(0.066) TCGA-77-7335-01 2 228881648 228881648 C A SPHKAP Nonsense_Mutation p.E1308* 0.46 TCGA-77-7335-01 2 29240726 29240726 G A FAM179A Missense_Mutation p.D422N 0.34 tolerated(1) benign(0) TCGA-77-7335-01 2 37483810 37483810 C A PRKD3 Missense_Mutation p.G803V 0.28 tolerated(0.3) benign(0.004) TCGA-77-7335-01 2 44201795 44201795 C T LRPPRC Missense_Mutation p.E323K 0.23 tolerated(0.22) benign(0.211) TCGA-77-7335-01 2 46211737 46211737 C A PRKCE Silent p.I247I 0.19 TCGA-77-7335-01 2 70451689 70451689 T G TIA1 Missense_Mutation p.K157N 0.12 deleterious(0) probably_damaging(0.916) TCGA-77-7335-01 2 79384795 79384795 C T REG3A Silent p.E121E 0.26 TCGA-77-7335-01 2 86433410 86433410 C - MRPL35 Frame_Shift_Del p.N77Ifs*11 0.10 TCGA-77-7335-01 2 90108914 90108914 C A IGKV6D-41 Missense_Mutation p.P60Q 0.07 deleterious(0) possibly_damaging(0.904) TCGA-77-7335-01 2 90212201 90212201 T A IGKV3D-11 Missense_Mutation p.L98Q 0.13 deleterious(0.01) probably_damaging(0.977) TCGA-77-7335-01 3 107778362 107778362 G C CD47 Missense_Mutation p.L210V 0.16 deleterious(0) probably_damaging(0.994) TCGA-77-7335-01 3 108572538 108572538 G A TRAT1 Silent p.R125R 0.26 TCGA-77-7335-01 3 121356085 121356085 C T HCLS1 Missense_Mutation p.G158D 0.13 deleterious(0) unknown(0) TCGA-77-7335-01 3 122942523 122942523 G A SEC22A Missense_Mutation p.M100I 0.13 tolerated(0.1) benign(0.001) TCGA-77-7335-01 3 125725265 125725265 T A SLC41A3 Silent p.A503A 0.26 TCGA-77-7335-01 3 135801115 135801115 A G PPP2R3A Silent p.A880A 0.35 TCGA-77-7335-01 3 142297565 142297565 T C ATR 5'UTR 0.13 TCGA-77-7335-01 3 14799006 14799006 C G C3orf20 Missense_Mutation p.P690R 0.13 deleterious(0) probably_damaging(1) TCGA-77-7335-01 3 154147108 154147108 A T GPR149 Silent p.G99G 0.14 TCGA-77-7335-01 3 157178091 157178091 G T VEPH1 Missense_Mutation p.F136L 0.15 deleterious(0.04) probably_damaging(0.984) TCGA-77-7335-01 3 164786967 164786967 C T SI Missense_Mutation p.R91K 0.07 deleterious(0.04) benign(0.367) TCGA-77-7335-01 3 170625527 170625527 C T EIF5A2 Silent p.S23S 0.10 TCGA-77-7335-01 3 171392322 171392322 G C PLD1 Missense_Mutation p.Q733E 0.08 tolerated(0.46) benign(0.027) TCGA-77-7335-01 3 182910878 182910878 G A MCF2L2 Silent p.G975G 0.40 TCGA-77-7335-01 3 184642731 184642731 G C VPS8 Missense_Mutation p.D846H 0.09 deleterious(0.01) possibly_damaging(0.77) TCGA-77-7335-01 3 184642753 184642753 G C VPS8 Missense_Mutation p.R853T 0.10 deleterious(0) probably_damaging(0.937) TCGA-77-7335-01 3 44945414 44945414 C A TGM4 Missense_Mutation p.P337Q 0.19 tolerated(0.56) possibly_damaging(0.496) TCGA-77-7335-01 3 52087999 52088000 - CTC DUSP7 In_Frame_Ins p.W302_S303insR 0.21 TCGA-77-7335-01 3 52438562 52438563 - CT BAP1 Frame_Shift_Ins p.V386Efs*45 0.22 TCGA-77-7335-01 3 58510245 58510245 G A ACOX2 Silent p.T478T 0.19 TCGA-77-7335-01 3 69221047 69221048 AA - FRMD4B Frame_Shift_Del p.F1023Lfs*3 0.22 TCGA-77-7335-01 3 77637987 77637987 A T ROBO2 Silent p.I878I 0.24 TCGA-77-7335-01 4 126241120 126241120 G C FAT4 Missense_Mutation p.G1185A 0.21 probably_damaging(1) TCGA-77-7335-01 4 145628329 145628329 C T HHIP Silent p.L358L 0.17 TCGA-77-7335-01 4 155156125 155156125 C G DCHS2 Missense_Mutation p.D2772H 0.23 deleterious(0.02) benign(0.035) TCGA-77-7335-01 4 155529637 155529637 C G FGG Missense_Mutation p.D278H 0.30 deleterious(0) probably_damaging(1) TCGA-77-7335-01 4 177138023 177138023 T C ASB5 Missense_Mutation p.I270V 0.25 tolerated(1) benign(0.006) TCGA-77-7335-01 4 187454963 187454963 G C MTNR1A Silent p.V311V 0.20 TCGA-77-7335-01 4 189020314 189020314 C T TRIML2 Missense_Mutation p.G116R 0.15 tolerated(0.24) possibly_damaging(0.86) TCGA-77-7335-01 4 69687988 69687988 G A UGT2B10 Splice_Site p.X290_splice 0.17 TCGA-77-7335-01 4 84502947 84502947 G C AGPAT9 Silent p.L147L 0.33 TCGA-77-7335-01 5 101593686 101593686 G A SLCO4C1 Nonsense_Mutation p.Q412* 0.20 TCGA-77-7335-01 5 140222769 140222769 G A PCDHA8 Silent p.P621P 0.18 TCGA-77-7335-01 5 140237903 140237903 G T PCDHA10 Missense_Mutation p.C757F 0.25 deleterious_low_confidence(0.01) probably_damaging(0.957) TCGA-77-7335-01 5 140554486 140554486 G T PCDHB7 Silent p.V690V 0.03 TCGA-77-7335-01 5 140554487 140554487 G T PCDHB7 Missense_Mutation p.A691S 0.03 tolerated_low_confidence(0.1) benign(0.353) TCGA-77-7335-01 5 140782956 140782956 C T PCDHGA9 Missense_Mutation p.A146V 0.21 tolerated_low_confidence(0.12) benign(0.254) TCGA-77-7335-01 5 141334809 141334809 G C PCDH12 Missense_Mutation p.P870A 0.22 tolerated(0.06) benign(0.004) TCGA-77-7335-01 5 14291117 14291117 A G TRIO Missense_Mutation p.E278G 0.18 possibly_damaging(0.549) TCGA-77-7335-01 5 150097852 150097852 T C DCTN4 Missense_Mutation p.N360D 0.11 tolerated(0.52) benign(0.001) TCGA-77-7335-01 5 161116284 161116284 C G GABRA6 Silent p.P157P 0.13 TCGA-77-7335-01 5 176860999 176860999 A G GRK6 Missense_Mutation p.I275V 0.13 deleterious(0.03) probably_damaging(0.961) TCGA-77-7335-01 5 178373428 178373428 C T ZNF454 Silent p.A34A 0.15 TCGA-77-7335-01 5 19503202 19503202 C G CDH18 Missense_Mutation p.S510T 0.26 tolerated(0.12) benign(0.001) TCGA-77-7335-01 5 2747719 2747719 C G IRX2 Missense_Mutation p.G459R 0.23 tolerated_low_confidence(0.08) benign(0.143) TCGA-77-7335-01 5 39316087 39316087 T C C9 Silent p.Q220Q 0.21 TCGA-77-7335-01 5 82836057 82836057 A G VCAN Missense_Mutation p.K2412R 0.24 tolerated(0.13) benign(0.062) TCGA-77-7335-01 6 100369037 100369037 G T MCHR2 Missense_Mutation p.H268N 0.15 deleterious(0.03) possibly_damaging(0.835) TCGA-77-7335-01 6 116757860 116757861 AC G DSE Frame_Shift_Del p.Q744Rfs*35 0.22 TCGA-77-7335-01 6 152557283 152557283 C T SYNE1 Silent p.K6785K 0.23 TCGA-77-7335-01 6 152826417 152826417 T A SYNE1 Nonsense_Mutation p.R233* 0.19 TCGA-77-7335-01 6 166844021 166844021 G C RPS6KA2 Missense_Mutation p.Q509E 0.26 tolerated(0.11) benign(0.011) TCGA-77-7335-01 6 170592142 170592142 T G DLL1 Missense_Mutation p.K700N 0.18 tolerated(0.07) benign(0.001) TCGA-77-7335-01 6 20126890 20126890 T C MBOAT1 Missense_Mutation p.N191S 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-77-7335-01 6 25776864 25776864 C G SLC17A4 Missense_Mutation p.I343M 0.16 deleterious(0.02) benign(0.301) TCGA-77-7335-01 6 26189224 26189224 G C HIST1H4D Missense_Mutation p.I27M 0.28 deleterious(0.02) probably_damaging(0.912) TCGA-77-7335-01 6 27368675 27368675 C A ZNF391 Silent p.R176R 0.17 TCGA-77-7335-01 6 31658376 31658376 T A ABHD16A Missense_Mutation p.I283F 0.30 deleterious(0) possibly_damaging(0.697) TCGA-77-7335-01 6 33406323 33406323 A G SYNGAP1 Missense_Mutation p.Y505C 0.21 deleterious(0) probably_damaging(1) TCGA-77-7335-01 6 34850822 34850822 A G TAF11 Silent p.V69V 0.19 TCGA-77-7335-01 6 46826240 46826240 G A GPR116 Missense_Mutation p.L1134F 0.21 deleterious(0) probably_damaging(1) TCGA-77-7335-01 6 64408158 64408158 G C PHF3 Missense_Mutation p.G909A 0.15 deleterious(0.02) benign(0.036) TCGA-77-7335-01 6 76527308 76527308 G T MYO6 Missense_Mutation p.G15V 0.15 deleterious(0) unknown(0) TCGA-77-7335-01 6 80383448 80383448 C A SH3BGRL2 Missense_Mutation p.P55T 0.18 tolerated(0.41) benign(0.011) TCGA-77-7335-01 7 117876881 117876881 T C ANKRD7 Missense_Mutation p.C205R 0.17 tolerated(0.17) benign(0) TCGA-77-7335-01 7 128489476 128489476 G A FLNC Silent p.T1681T 0.20 TCGA-77-7335-01 7 149543282 149543282 G A ZNF862 Missense_Mutation p.R60Q 0.24 tolerated_low_confidence(1) benign(0.003) TCGA-77-7335-01 7 151878499 151878499 G C KMT2C Nonsense_Mutation p.S2149* 0.16 TCGA-77-7335-01 7 152549306 152549306 C T ACTR3B Silent p.L349L 0.25 TCGA-77-7335-01 7 2296656 2296656 C A SNX8 Missense_Mutation p.Q379H 0.25 deleterious(0.03) probably_damaging(0.933) TCGA-77-7335-01 7 29546982 29546982 G A CHN2 Splice_Site p.X377_splice 0.23 TCGA-77-7335-01 7 47892804 47892804 G A PKD1L1 Silent p.P1627P 0.31 TCGA-77-7335-01 7 73280117 73280117 G A WBSCR28 Missense_Mutation p.G238R 0.19 tolerated(0.09) benign(0.216) TCGA-77-7335-01 7 73280118 73280118 G T WBSCR28 Missense_Mutation p.G238V 0.19 deleterious(0.02) benign(0.262) TCGA-77-7335-01 7 8198282 8198282 C G ICA1 Missense_Mutation p.V194L 0.17 deleterious(0) possibly_damaging(0.874) TCGA-77-7335-01 7 87196132 87196132 C T ABCB1 Missense_Mutation p.D167N 0.24 tolerated(0.06) benign(0.065) TCGA-77-7335-01 7 99771488 99771488 C T GPC2 Missense_Mutation p.G288R 0.18 deleterious(0.04) possibly_damaging(0.829) TCGA-77-7335-01 8 10755749 10755749 C T XKR6 Missense_Mutation p.V547I 0.22 tolerated(0.19) benign(0.041) TCGA-77-7335-01 8 113301679 113301679 G A CSMD3 Silent p.C3021C 0.58 TCGA-77-7335-01 8 124989783 124989783 G T FER1L6 Missense_Mutation p.D333Y 0.55 deleterious(0) probably_damaging(0.992) TCGA-77-7335-01 8 133650252 133650252 G C LRRC6 Missense_Mutation p.L120V 0.65 deleterious(0) probably_damaging(0.978) TCGA-77-7335-01 8 13948047 13948047 C A SGCZ Nonsense_Mutation p.E282* 0.16 TCGA-77-7335-01 8 139833446 139833446 C A COL22A1 Missense_Mutation p.R393L 0.19 unknown(0) TCGA-77-7335-01 8 17419583 17419583 G C SLC7A2 Missense_Mutation p.W585C 0.23 tolerated(0.05) benign(0.188) TCGA-77-7335-01 8 2050563 2050563 C T MYOM2 Missense_Mutation p.A909V 0.18 deleterious(0.01) possibly_damaging(0.83) TCGA-77-7335-01 8 22478985 22478985 C T BIN3 Missense_Mutation p.E238K 0.13 deleterious(0.02) benign(0.079) TCGA-77-7335-01 8 59490595 59490595 A G SDCBP Missense_Mutation p.I136V 0.10 tolerated(0.89) benign(0.001) TCGA-77-7335-01 8 66992654 66992654 T G DNAJC5B Missense_Mutation p.C126G 0.15 tolerated(0.06) benign(0.26) TCGA-77-7335-01 9 102769929 102769929 T C ERP44 Missense_Mutation p.M269V 0.12 tolerated(0.36) benign(0.001) TCGA-77-7335-01 9 113213668 113213668 C G SVEP1 Missense_Mutation p.E1268Q 0.26 benign(0.382) TCGA-77-7335-01 9 118997731 118997731 G A PAPPA Silent p.E849E 0.25 TCGA-77-7335-01 9 120476269 120476269 G A TLR4 Silent p.L621L 0.21 TCGA-77-7335-01 9 122075630 122075630 T C BRINP1 Missense_Mutation p.N2D 0.38 tolerated_low_confidence(0.16) benign(0.012) TCGA-77-7335-01 9 125154602 125154602 C G PTGS1 Missense_Mutation p.P527A 0.15 deleterious(0.01) possibly_damaging(0.903) TCGA-77-7335-01 9 125512689 125512689 T G OR1L6 Missense_Mutation p.L188R 0.14 deleterious(0) probably_damaging(1) TCGA-77-7335-01 9 133376447 133376447 C T ASS1 3'UTR 0.18 TCGA-77-7335-01 9 136901477 136901477 G C BRD3 Intron 0.18 TCGA-77-7335-01 9 35616138 35616138 G C CD72 Missense_Mutation p.L164V 0.21 deleterious(0.03) possibly_damaging(0.45) TCGA-77-7335-01 9 35957705 35957705 G - OR2S2 Frame_Shift_Del p.R132Gfs*4 0.19 TCGA-77-7335-01 X 101821977 101821977 A C NXF4 RNA 0.30 TCGA-77-7335-01 X 110954910 110954910 A C ALG13 Missense_Mutation p.E281A 0.20 deleterious(0) probably_damaging(0.997) TCGA-77-7335-01 X 11781114 11781114 G A MSL3 Silent p.K249K 0.21 TCGA-77-7335-01 X 127184966 127184966 C T ACTRT1 3'UTR 0.22 TCGA-77-7335-01 X 153296370 153296370 G C MECP2 Missense_Mutation p.I315M 0.29 deleterious(0) probably_damaging(0.996) TCGA-77-7335-01 X 1761821 1761821 C T ASMT Missense_Mutation p.H346Y 0.19 tolerated(1) possibly_damaging(0.574) TCGA-77-7335-01 X 18797183 18797183 G C PPEF1 Missense_Mutation p.R205P 0.28 deleterious(0) probably_damaging(1) TCGA-77-7335-01 X 20069006 20069006 G T MAP7D2 Silent p.P218P 0.30 TCGA-77-7335-01 X 3002543 3002543 G A ARSF Missense_Mutation p.M222I 0.17 tolerated(0.19) benign(0.01) TCGA-77-7335-01 X 32404583 32404583 C G DMD Splice_Site p.X1507_splice 0.27 TCGA-77-7335-01 X 35988925 35988925 C A CXorf22 Missense_Mutation p.H619N 0.27 deleterious(0) benign(0.056) TCGA-77-7335-01 X 47269746 47269746 G C ZNF157 Missense_Mutation p.Q48H 0.22 deleterious(0) benign(0.403) TCGA-77-7335-01 X 48324642 48324642 T G SLC38A5 Silent p.T129T 0.14 TCGA-77-7335-01 X 49767831 49767831 A T CLCN5 Intron 0.20 TCGA-77-7335-01 X 52825374 52825374 C T SPANXN5 3'UTR 0.17 TCGA-77-7335-01 X 72667544 72667544 G T CDX4 Missense_Mutation p.S152I 0.21 deleterious(0.03) possibly_damaging(0.803) TCGA-77-7335-01 X 73812550 73812550 T A RLIM Silent p.T200T 0.30 TCGA-77-7335-01 X 79698342 79698342 G C FAM46D Missense_Mutation p.D102H 0.25 deleterious(0.03) probably_damaging(0.93) TCGA-77-7335-01 X 83576950 83576950 T G HDX Missense_Mutation p.T674P 0.22 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-77-7335-01 X 91642905 91642905 G T PCDH11X Missense_Mutation p.G1106W 0.19 deleterious(0) probably_damaging(0.998) TCGA-77-7337-01 10 101841357 101841371 AGGAAGACTGAGAGC - CPN1 In_Frame_Del p.L5_L9del 0.16 TCGA-77-7337-01 10 118228810 118228810 G A PNLIPRP3 Silent p.G347G 0.51 TCGA-77-7337-01 10 129902128 129902130 TCT - MKI67 In_Frame_Del p.E2660del 0.22 TCGA-77-7337-01 10 23247996 23247996 T C ARMC3 Intron 0.18 TCGA-77-7337-01 10 25839925 25839925 G T GPR158 Missense_Mutation p.E475D 0.22 tolerated(0.06) benign(0.374) TCGA-77-7337-01 10 30317789 30317789 G A KIAA1462 Missense_Mutation p.R430W 0.27 deleterious(0) probably_damaging(1) TCGA-77-7337-01 10 32800561 32800561 C G CCDC7 Intron 0.17 TCGA-77-7337-01 10 5960334 5960334 T A FBXO18 Missense_Mutation p.C716S 0.40 deleterious(0) possibly_damaging(0.905) TCGA-77-7337-01 10 64966933 64966933 G A JMJD1C Missense_Mutation p.A1499V 0.25 tolerated(1) benign(0) TCGA-77-7337-01 10 96117824 96117824 C T NOC3L Intron 0.46 TCGA-77-7337-01 11 104897611 104897611 T A CASP1 Missense_Mutation p.Q358H 0.10 deleterious(0) probably_damaging(0.959) TCGA-77-7337-01 11 105732806 105732806 A T GRIA4 Missense_Mutation p.S182C 0.24 deleterious(0.01) probably_damaging(0.962) TCGA-77-7337-01 11 117403124 117403124 G T DSCAML1 Silent p.R269R 0.15 TCGA-77-7337-01 11 118374891 118374891 G A KMT2A Missense_Mutation p.E2762K 0.27 probably_damaging(0.937) TCGA-77-7337-01 11 118899115 118899115 G T SLC37A4 Nonsense_Mutation p.S57* 0.33 TCGA-77-7337-01 11 121986688 121986688 C G BLID 5'UTR 0.23 TCGA-77-7337-01 11 124294692 124294692 G A OR8B4 Missense_Mutation p.P26S 0.19 deleterious_low_confidence(0.02) benign(0.007) TCGA-77-7337-01 11 124750356 124750356 G T ROBO3 Missense_Mutation p.R1334L 0.16 deleterious_low_confidence(0) benign(0.225) TCGA-77-7337-01 11 133791267 133791267 C A IGSF9B Nonsense_Mutation p.E785* 0.29 TCGA-77-7337-01 11 134147304 134147304 A G GLB1L3 Silent p.E36E 0.12 TCGA-77-7337-01 11 134180961 134180961 C T GLB1L3 Missense_Mutation p.T395I 0.04 tolerated(0.34) benign(0.001) TCGA-77-7337-01 11 22301167 22301167 G A ANO5 Silent p.K866K 0.29 TCGA-77-7337-01 11 251572 251572 C A PSMD13 Missense_Mutation p.H290Q 0.39 tolerated(0.35) benign(0.089) TCGA-77-7337-01 11 30900234 30900234 C A DCDC1 Missense_Mutation p.R1750I 0.23 deleterious(0) possibly_damaging(0.506) TCGA-77-7337-01 11 30925143 30925143 G A DCDC1 Missense_Mutation p.R1466C 0.26 tolerated(0.09) benign(0) TCGA-77-7337-01 11 43351514 43351514 G T API5 Splice_Site p.X376_splice 0.20 TCGA-77-7337-01 11 44074260 44074260 C T ACCSL Missense_Mutation p.S274F 0.24 deleterious(0.05) probably_damaging(0.975) TCGA-77-7337-01 11 47299720 47299720 T A MADD Missense_Mutation p.L367Q 0.13 deleterious(0) probably_damaging(1) TCGA-77-7337-01 11 48347210 48347210 G T OR4C3 Missense_Mutation p.A240S 0.05 deleterious(0) benign(0.392) TCGA-77-7337-01 11 4976375 4976375 G T OR51A2 Missense_Mutation p.A190D 0.38 deleterious(0) probably_damaging(0.967) TCGA-77-7337-01 11 5067947 5067947 C T OR52J3 Silent p.F64F 0.31 TCGA-77-7337-01 11 5529498 5529498 C A UBQLN3 Missense_Mutation p.G431W 0.29 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-77-7337-01 11 55541587 55541587 C A OR5D13 Missense_Mutation p.T225N 0.22 deleterious(0) benign(0.002) TCGA-77-7337-01 11 55606429 55606429 C G OR5D16 Missense_Mutation p.L68V 0.24 deleterious(0) probably_damaging(0.96) TCGA-77-7337-01 11 55658977 55658977 G C TRIM51 Missense_Mutation p.G410R 0.20 deleterious(0.03) possibly_damaging(0.798) TCGA-77-7337-01 11 57971072 57971072 C T OR1S2 Silent p.L194L 0.15 TCGA-77-7337-01 11 5809461 5809461 C A OR52N1 Missense_Mutation p.V196F 0.39 deleterious(0.03) possibly_damaging(0.756) TCGA-77-7337-01 11 60105252 60105252 G T MS4A6E Silent p.L62L 0.33 TCGA-77-7337-01 11 62376021 62376021 G A EML3 Missense_Mutation p.S368L 0.23 deleterious(0) possibly_damaging(0.833) TCGA-77-7337-01 11 64323445 64323445 G T SLC22A11 5'UTR 0.15 TCGA-77-7337-01 11 64323449 64323449 G T SLC22A11 5'UTR 0.14 TCGA-77-7337-01 11 64527238 64527238 T A PYGM Missense_Mutation p.N45Y 0.22 tolerated(0.42) probably_damaging(0.998) TCGA-77-7337-01 11 64757242 64757242 C A BATF2 Nonsense_Mutation p.E62* 0.21 TCGA-77-7337-01 11 64939749 64939750 GC - SPDYC Frame_Shift_Del p.A99Pfs*32 0.19 TCGA-77-7337-01 11 65273644 65273654 CTTTGCTTTGA - MALAT1 RNA 0.16 TCGA-77-7337-01 11 66191854 66191854 A T NPAS4 Missense_Mutation p.E498V 0.23 deleterious_low_confidence(0.01) benign(0.353) TCGA-77-7337-01 11 66455067 66455067 G A SPTBN2 Missense_Mutation p.R2185W 0.17 deleterious(0.02) benign(0.001) TCGA-77-7337-01 11 67059093 67059093 G A ANKRD13D Missense_Mutation p.M139I 0.21 tolerated(0.99) benign(0.007) TCGA-77-7337-01 11 67223898 67223898 C A CABP4 Missense_Mutation p.H176N 0.27 tolerated(0.08) benign(0.061) TCGA-77-7337-01 11 71191899 71191899 A G NADSYN1 Silent p.K324K 0.19 TCGA-77-7337-01 11 71847055 71847055 G A FOLR3 Silent p.A19A 0.17 TCGA-77-7337-01 11 74013580 74013580 T A P4HA3 Missense_Mutation p.E134V 0.18 deleterious(0.04) benign(0.42) TCGA-77-7337-01 11 75146601 75146601 C T GDPD5 Missense_Mutation p.R590Q 0.16 deleterious_low_confidence(0.04) benign(0.005) TCGA-77-7337-01 11 76905433 76905433 A T MYO7A Missense_Mutation p.Y1396F 0.42 tolerated(0.41) possibly_damaging(0.511) TCGA-77-7337-01 11 89531503 89531503 T A TRIM49 Missense_Mutation p.N385I 0.07 deleterious(0) benign(0.364) TCGA-77-7337-01 11 9225523 9225523 T C DENND5A Silent p.T211T 0.07 TCGA-77-7337-01 12 100200440 100200440 T A ANKS1B Missense_Mutation p.Q137H 0.16 deleterious(0) probably_damaging(0.998) TCGA-77-7337-01 12 101442172 101442172 A G ANO4 Silent p.A400A 0.16 TCGA-77-7337-01 12 10868328 10868328 C T YBX3 Missense_Mutation p.E139K 0.35 deleterious(0.01) probably_damaging(0.991) TCGA-77-7337-01 12 10955022 10955022 T A TAS2R7 Missense_Mutation p.S50C 0.47 tolerated(0.05) benign(0.194) TCGA-77-7337-01 12 109675077 109675078 - A ACACB Frame_Shift_Ins p.M1520Dfs*20 0.21 TCGA-77-7337-01 12 10978123 10978123 C A TAS2R10 Missense_Mutation p.C249F 0.33 tolerated(0.21) benign(0.012) TCGA-77-7337-01 12 113601018 113601018 T C DDX54 Missense_Mutation p.K667R 0.24 tolerated(0.19) benign(0.042) TCGA-77-7337-01 12 121434481 121434481 G A HNF1A Silent p.G415G 0.21 TCGA-77-7337-01 12 125834438 125834438 C A TMEM132B Missense_Mutation p.P165T 0.23 tolerated(0.14) possibly_damaging(0.474) TCGA-77-7337-01 12 20968633 20968633 C T LST3 5'UTR 0.33 TCGA-77-7337-01 12 3763473 3763473 C A EFCAB4B Silent p.R317R 0.43 TCGA-77-7337-01 12 40626166 40626166 G T LRRK2 Nonsense_Mutation p.E110* 0.21 TCGA-77-7337-01 12 49224320 49224320 G A DDX23 Missense_Mutation p.P799S 0.18 deleterious(0.02) benign(0.285) TCGA-77-7337-01 12 49396741 49396741 C A PRKAG1 Missense_Mutation p.V322L 0.15 tolerated(0.21) benign(0.076) TCGA-77-7337-01 12 49415856 49415858 GAT - KMT2D In_Frame_Del p.I5497del 0.24 TCGA-77-7337-01 12 49418449 49418449 C T KMT2D Missense_Mutation p.G5322R 0.30 unknown(0) TCGA-77-7337-01 12 52284557 52284557 A G ANKRD33 Missense_Mutation p.Q276R 0.42 tolerated(0.38) benign(0.175) TCGA-77-7337-01 12 52963652 52963652 C T KRT74 Silent p.V375V 0.15 TCGA-77-7337-01 12 62261174 62261174 T A FAM19A2 Missense_Mutation p.K11N 0.20 tolerated_low_confidence(0.08) benign(0.067) TCGA-77-7337-01 12 62892739 62892739 A G MON2 Missense_Mutation p.N159S 0.40 tolerated(1) benign(0.032) TCGA-77-7337-01 12 72316963 72316963 C T TBC1D15 Silent p.V685V 0.22 TCGA-77-7337-01 12 72355426 72355426 C G TPH2 Intron 0.17 TCGA-77-7337-01 12 7295506 7295506 G C CLSTN3 Missense_Mutation p.A528P 0.27 deleterious(0) probably_damaging(0.995) TCGA-77-7337-01 12 7899930 7899930 T C CLEC4C Silent p.E5E 0.23 TCGA-77-7337-01 12 79679619 79679619 G T SYT1 Silent p.L73L 0.17 TCGA-77-7337-01 12 93835732 93835732 C A UBE2N 5'UTR 0.19 TCGA-77-7337-01 13 100518510 100518510 A G CLYBL Silent p.K217K 0.21 TCGA-77-7337-01 13 109445948 109445948 G C MYO16 Missense_Mutation p.G212A 0.26 deleterious(0) probably_damaging(1) TCGA-77-7337-01 13 23905622 23905622 C G SACS Missense_Mutation p.R4131S 0.32 probably_damaging(0.977) TCGA-77-7337-01 13 32900288 32900288 G T BRCA2 Splice_Site p.X159_splice 0.30 TCGA-77-7337-01 13 35735940 35735940 A T NBEA Missense_Mutation p.L1305F 0.29 tolerated_low_confidence(0.4) possibly_damaging(0.543) TCGA-77-7337-01 13 36229876 36229876 C T NBEA Silent p.N2763N 0.38 TCGA-77-7337-01 13 70514183 70514183 T A KLHL1 Missense_Mutation p.S335C 0.21 deleterious(0.02) possibly_damaging(0.762) TCGA-77-7337-01 13 99083352 99083352 G A FARP1 Missense_Mutation p.G654E 0.32 deleterious(0.01) benign(0.008) TCGA-77-7337-01 14 102695585 102695585 C A MOK 3'UTR 0.32 TCGA-77-7337-01 14 103918292 103918292 C G MARK3 Silent p.L128L 0.28 TCGA-77-7337-01 14 106173690 106173690 C A IGHA1 Missense_Mutation p.A293S 0.22 tolerated(0.28) possibly_damaging(0.715) TCGA-77-7337-01 14 106993909 106993909 G A IGHV3-48 Nonsense_Mutation p.R86* 0.09 TCGA-77-7337-01 14 20666024 20666024 G T OR11G2 Missense_Mutation p.R177L 0.25 deleterious(0.02) benign(0.342) TCGA-77-7337-01 14 21831067 21831067 C T SUPT16H Silent p.L517L 0.33 TCGA-77-7337-01 14 22314903 22314903 C T TRAV8-2 5'UTR 0.29 TCGA-77-7337-01 14 23866426 23866426 T C MYH6 Missense_Mutation p.H668R 0.23 deleterious(0.01) probably_damaging(1) TCGA-77-7337-01 14 24884557 24884557 G T NYNRIN Missense_Mutation p.G1201V 0.26 deleterious(0) probably_damaging(1) TCGA-77-7337-01 14 34204469 34204469 T A NPAS3 Silent p.R261R 0.26 TCGA-77-7337-01 14 70925552 70925552 T G ADAM21 Missense_Mutation p.C446G 0.15 deleterious(0) probably_damaging(1) TCGA-77-7337-01 14 73721606 73721606 G A PAPLN Missense_Mutation p.G476S 0.46 deleterious(0.02) probably_damaging(0.998) TCGA-77-7337-01 14 74040179 74040179 G A ACOT2 Missense_Mutation p.G244D 0.23 deleterious(0.01) possibly_damaging(0.85) TCGA-77-7337-01 14 74824432 74824432 G T VRTN Missense_Mutation p.A316S 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-77-7337-01 14 75416066 75416066 G A PGF Silent p.T103T 0.24 TCGA-77-7337-01 14 76427329 76427329 G C TGFB3 Nonsense_Mutation p.Y339* 0.11 TCGA-77-7337-01 14 94155186 94155186 G C UNC79 Missense_Mutation p.G2224A 0.23 deleterious(0) probably_damaging(0.999) TCGA-77-7337-01 14 94512168 94512168 C G OTUB2 Missense_Mutation p.A202G 0.32 tolerated(0.83) benign(0.424) TCGA-77-7337-01 15 22369322 22369322 G T OR4M2 Silent p.V249V 0.12 TCGA-77-7337-01 15 26793272 26793272 G T GABRB3 Missense_Mutation p.H364N 0.24 tolerated(0.11) benign(0.004) TCGA-77-7337-01 15 28090185 28090185 C A OCA2 Silent p.L784L 0.23 TCGA-77-7337-01 15 33893626 33893626 G C RYR3 Missense_Mutation p.D599H 0.29 probably_damaging(0.997) TCGA-77-7337-01 15 41148184 41148184 C G SPINT1 Silent p.T420T 0.31 TCGA-77-7337-01 15 41794277 41794277 G C ITPKA Missense_Mutation p.D296H 0.25 deleterious(0) probably_damaging(0.995) TCGA-77-7337-01 15 43817575 43817575 G A MAP1A Missense_Mutation p.G1302R 0.39 benign(0.011) TCGA-77-7337-01 15 48056857 48056857 G T SEMA6D Missense_Mutation p.G374C 0.40 deleterious(0.01) probably_damaging(0.982) TCGA-77-7337-01 15 55677858 55677858 C T CCPG1 Missense_Mutation p.A39T 0.08 tolerated(1) benign(0.002) TCGA-77-7337-01 15 70347541 70347541 C A TLE3 Silent p.R478R 0.46 TCGA-77-7337-01 16 10995932 10995932 G T CIITA Silent p.V173V 0.23 TCGA-77-7337-01 16 1394249 1394249 C T BAIAP3 Silent p.L546L 0.26 TCGA-77-7337-01 16 17353118 17353118 C G XYLT1 Missense_Mutation p.G214R 0.16 tolerated_low_confidence(0.18) benign(0.062) TCGA-77-7337-01 16 2027108 2027108 A T TBL3 Silent p.S498S 0.28 TCGA-77-7337-01 16 21156704 21156704 G A DNAH3 Silent p.Y82Y 0.18 TCGA-77-7337-01 16 27495580 27495580 C A GTF3C1 Missense_Mutation p.R1318L 0.32 deleterious(0) probably_damaging(0.999) TCGA-77-7337-01 16 29989123 29989123 G A TAOK2 Silent p.L10L 0.32 TCGA-77-7337-01 16 30490670 30490670 T C ITGAL Missense_Mutation p.V155A 0.31 tolerated(0.09) benign(0.113) TCGA-77-7337-01 16 3100302 3100302 G - MMP25 Frame_Shift_Del p.V140Sfs*3 0.23 TCGA-77-7337-01 16 3139491 3139491 G A ZSCAN10 Silent p.H593H 0.12 TCGA-77-7337-01 16 3794952 3794952 C G CREBBP Missense_Mutation p.D1309H 0.30 unknown(0) TCGA-77-7337-01 16 55562305 55562305 G T LPCAT2 Missense_Mutation p.A110S 0.14 tolerated(0.24) benign(0.011) TCGA-77-7337-01 16 57954298 57954298 G A CNGB1 Silent p.P598P 0.07 TCGA-77-7337-01 16 67168304 67168304 G T C16orf70 Nonsense_Mutation p.E199* 0.27 TCGA-77-7337-01 16 70289717 70289717 C A AARS Missense_Mutation p.A734S 0.25 deleterious(0) possibly_damaging(0.872) TCGA-77-7337-01 16 70298885 70298885 G - AARS Frame_Shift_Del p.H490Ifs*17 0.21 TCGA-77-7337-01 16 72828767 72828767 G A ZFHX3 Missense_Mutation p.S2605L 0.29 unknown(0) TCGA-77-7337-01 16 87744949 87744949 G A KLHDC4 Silent p.F312F 0.24 TCGA-77-7337-01 17 18052885 18052885 C A MYO15A Nonsense_Mutation p.Y2401* 0.08 TCGA-77-7337-01 17 26959139 26959139 C T KIAA0100 Silent p.L1308L 0.32 TCGA-77-7337-01 17 30349258 30349258 G A LRRC37B Missense_Mutation p.A365T 0.20 tolerated(0.81) probably_damaging(0.98) TCGA-77-7337-01 17 30349540 30349540 A T LRRC37B Missense_Mutation p.T459S 0.26 tolerated(0.17) benign(0.176) TCGA-77-7337-01 17 3324464 3324464 C A OR3A3 Silent p.T201T 0.30 TCGA-77-7337-01 17 39274556 39274556 G A KRTAP4-11 Silent p.S4S 0.30 TCGA-77-7337-01 17 39673153 39673153 G T KRT15 Silent p.V215V 0.30 TCGA-77-7337-01 17 58148154 58148154 T C HEATR6 Silent p.A238A 0.24 TCGA-77-7337-01 17 60472523 60472523 C T EFCAB3 Silent p.P206P 0.21 TCGA-77-7337-01 17 61994782 61994782 C T GH1 Missense_Mutation p.A181T 0.18 tolerated(0.25) benign(0.004) TCGA-77-7337-01 17 7185241 7185241 C T SLC2A4 5'UTR 0.27 TCGA-77-7337-01 17 7578461 7578461 C A TP53 Missense_Mutation p.V157F 0.32 deleterious(0) probably_damaging(0.997) TCGA-77-7337-01 17 8168945 8168945 C G PFAS Missense_Mutation p.P845A 0.38 tolerated(0.11) benign(0.005) TCGA-77-7337-01 17 8731922 8731922 C T PIK3R6 Silent p.R425R 0.28 TCGA-77-7337-01 18 32887120 32887120 G A ZNF271 RNA 0.34 TCGA-77-7337-01 18 50731678 50731678 G A DCC Missense_Mutation p.G556S 0.32 tolerated(0.07) possibly_damaging(0.878) TCGA-77-7337-01 18 50731727 50731727 A T DCC Missense_Mutation p.K572I 0.33 tolerated(0.05) benign(0.086) TCGA-77-7337-01 18 50832049 50832049 G T DCC Missense_Mutation p.M671I 0.27 tolerated(0.32) benign(0) TCGA-77-7337-01 18 5416138 5416138 C G EPB41L3 Silent p.G582G 0.20 TCGA-77-7337-01 18 57136708 57136708 G C CCBE1 Missense_Mutation p.L133V 0.32 tolerated(0.27) probably_damaging(0.996) TCGA-77-7337-01 18 60025534 60025534 G T TNFRSF11A Missense_Mutation p.D161Y 0.33 deleterious(0) probably_damaging(0.977) TCGA-77-7337-01 18 67345053 67345053 G A DOK6 Missense_Mutation p.D125N 0.32 deleterious(0) probably_damaging(0.982) TCGA-77-7337-01 18 7049097 7049097 C T LAMA1 Missense_Mutation p.D250N 0.20 deleterious(0) probably_damaging(1) TCGA-77-7337-01 19 11660281 11660281 C - CNN1 Frame_Shift_Del p.Q216Rfs*4 0.21 TCGA-77-7337-01 19 12491170 12491170 C A CTD-3105H18.14 3'UTR 0.24 TCGA-77-7337-01 19 14673978 14673978 C G TECR Intron 0.17 TCGA-77-7337-01 19 23836862 23836862 T A ZNF675 Missense_Mutation p.K291N 0.13 deleterious(0) probably_damaging(0.996) TCGA-77-7337-01 19 38795254 38795254 C G C19orf33 Intron 0.30 TCGA-77-7337-01 19 39360221 39360221 C T RINL Missense_Mutation p.R489Q 0.26 tolerated(0.57) benign(0.041) TCGA-77-7337-01 19 39998772 39998772 G - DLL3 3'UTR 0.18 TCGA-77-7337-01 19 40724034 40724034 G A TTC9B Silent p.I85I 0.24 TCGA-77-7337-01 19 425221 425221 C A SHC2 Silent p.G395G 0.21 TCGA-77-7337-01 19 44934464 44934464 C A ZNF229 Silent p.G164G 0.23 TCGA-77-7337-01 19 49464131 49464131 G C BAX Missense_Mutation p.R145P 0.27 deleterious(0.01) benign(0.428) TCGA-77-7337-01 19 51021007 51021007 G T LRRC4B Missense_Mutation p.L655M 0.38 deleterious_low_confidence(0.02) possibly_damaging(0.643) TCGA-77-7337-01 19 51984797 51984797 C T CEACAM18 Missense_Mutation p.S245F 0.30 deleterious(0.02) benign(0.066) TCGA-77-7337-01 19 52004844 52004844 G A SIGLEC12 Silent p.Y48Y 0.18 TCGA-77-7337-01 19 5225853 5225853 C A PTPRS Missense_Mutation p.E793D 0.26 tolerated(0.08) possibly_damaging(0.563) TCGA-77-7337-01 19 52919337 52919337 G C ZNF528 Missense_Mutation p.C411S 0.32 deleterious(0) probably_damaging(0.991) TCGA-77-7337-01 19 55112291 55112291 C A LILRA1 3'UTR 0.25 TCGA-77-7337-01 19 55645458 55645458 C G TNNT1 Silent p.A242A 0.17 TCGA-77-7337-01 19 55693404 55693404 G A PTPRH Missense_Mutation p.P1060S 0.25 probably_damaging(0.928) TCGA-77-7337-01 19 56329375 56329375 A T NLRP11 Missense_Mutation p.L56M 0.20 deleterious(0.01) probably_damaging(0.995) TCGA-77-7337-01 19 56701734 56701734 G C ZSCAN5B Missense_Mutation p.P317R 0.20 tolerated(0.35) possibly_damaging(0.878) TCGA-77-7337-01 19 56896547 56896547 T C ZNF582 Missense_Mutation p.E80G 0.15 deleterious(0.04) benign(0.051) TCGA-77-7337-01 19 57334134 57334134 C A PEG3 Missense_Mutation p.R184S 0.13 deleterious(0) probably_damaging(0.919) TCGA-77-7337-01 19 6897165 6897165 G T EMR1 Missense_Mutation p.D82Y 0.10 deleterious(0) probably_damaging(0.977) TCGA-77-7337-01 1 11082686 11082686 C G TARDBP Missense_Mutation p.S407C 0.06 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-77-7337-01 1 111494241 111494241 G T LRIF1 Missense_Mutation p.S422Y 0.28 tolerated(1) probably_damaging(0.919) TCGA-77-7337-01 1 117311297 117311297 G A CD2 Silent p.S316S 0.25 TCGA-77-7337-01 1 12854505 12854505 T C PRAMEF1 Silent p.H243H 0.18 TCGA-77-7337-01 1 12884728 12884728 C A PRAMEF11 3'UTR 0.18 TCGA-77-7337-01 1 148011708 148011708 C - NBPF14 Frame_Shift_Del p.E519Kfs*41 0.15 TCGA-77-7337-01 1 152671371 152671371 C A LCE2A 5'UTR 0.23 TCGA-77-7337-01 1 152681888 152681888 G T LCE4A 3'UTR 0.28 TCGA-77-7337-01 1 152777516 152777516 T C LCE1C 3'UTR 0.25 TCGA-77-7337-01 1 154197627 154197627 G T UBAP2L Missense_Mutation p.A10S 0.16 tolerated(0.43) unknown(0) TCGA-77-7337-01 1 158622405 158622405 C T SPTA1 Missense_Mutation p.R1076H 0.20 deleterious(0.05) probably_damaging(0.912) TCGA-77-7337-01 1 158626369 158626369 C A SPTA1 Missense_Mutation p.Q961H 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-77-7337-01 1 158687498 158687498 C A OR6K3 Missense_Mutation p.M136I 0.20 deleterious(0.02) benign(0.056) TCGA-77-7337-01 1 160520819 160520819 G T CD84 Missense_Mutation p.A273D 0.24 tolerated(0.09) benign(0.008) TCGA-77-7337-01 1 162735796 162735796 G A DDR2 Missense_Mutation p.A369T 0.27 tolerated(0.32) benign(0.002) TCGA-77-7337-01 1 166039512 166039512 C A FAM78B Missense_Mutation p.R251L 0.21 tolerated(0.41) possibly_damaging(0.59) TCGA-77-7337-01 1 167095184 167095184 G T DUSP27 Silent p.R272R 0.29 TCGA-77-7337-01 1 183514082 183514086 TATGT - SMG7 Frame_Shift_Del p.V624Pfs*161 0.18 TCGA-77-7337-01 1 18692039 18692039 G T IGSF21 Missense_Mutation p.R288L 0.23 deleterious(0.02) benign(0.058) TCGA-77-7337-01 1 190067754 190067754 C G BRINP3 Missense_Mutation p.L565F 0.24 deleterious(0.04) probably_damaging(0.997) TCGA-77-7337-01 1 197411537 197411537 G A CRB1 Intron 0.46 TCGA-77-7337-01 1 198492680 198492680 C A ATP6V1G3 Missense_Mutation p.Q66H 0.29 tolerated(0.7) probably_damaging(0.956) TCGA-77-7337-01 1 198498268 198498268 T C ATP6V1G3 Silent p.V42V 0.20 TCGA-77-7337-01 1 201104897 201104897 C A TMEM9 Missense_Mutation p.R149L 0.29 deleterious(0) possibly_damaging(0.573) TCGA-77-7337-01 1 20517880 20517880 G C UBXN10 Missense_Mutation p.G276R 0.25 tolerated(0.53) benign(0.002) TCGA-77-7337-01 1 208205012 208205012 C A PLXNA2 Missense_Mutation p.M1716I 0.26 deleterious(0.01) benign(0.265) TCGA-77-7337-01 1 208205013 208205013 A T PLXNA2 Missense_Mutation p.M1716K 0.26 deleterious(0) benign(0.333) TCGA-77-7337-01 1 214705942 214705942 G C PTPN14 Intron 0.22 TCGA-77-7337-01 1 216498874 216498874 C A USH2A Missense_Mutation p.G306C 0.26 possibly_damaging(0.89) TCGA-77-7337-01 1 216737687 216737687 G T ESRRG Missense_Mutation p.P258T 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-77-7337-01 1 222803191 222803191 A G MIA3 Missense_Mutation p.K877E 0.23 tolerated(0.47) benign(0.006) TCGA-77-7337-01 1 23857130 23857130 C T E2F2 Silent p.T52T 0.35 TCGA-77-7337-01 1 240256805 240256805 G T FMN2 Missense_Mutation p.A466S 0.27 unknown(0) TCGA-77-7337-01 1 244736069 244736069 A G C1orf101 Missense_Mutation p.T649A 0.31 deleterious(0.01) possibly_damaging(0.523) TCGA-77-7337-01 1 2457924 2457924 T C PANK4 Missense_Mutation p.K35E 0.13 deleterious(0.02) possibly_damaging(0.734) TCGA-77-7337-01 1 248637525 248637525 C A OR2T3 Missense_Mutation p.P292T 0.09 deleterious(0.02) benign(0.02) TCGA-77-7337-01 1 248637526 248637526 C G OR2T3 Missense_Mutation p.P292R 0.09 deleterious(0) possibly_damaging(0.726) TCGA-77-7337-01 1 248737184 248737184 G C OR2T34 Missense_Mutation p.P292R 0.16 deleterious(0) possibly_damaging(0.726) TCGA-77-7337-01 1 248737185 248737185 G T OR2T34 Missense_Mutation p.P292T 0.16 deleterious(0.02) benign(0.02) TCGA-77-7337-01 1 248813940 248813940 C A OR2T27 Silent p.L82L 0.21 TCGA-77-7337-01 1 28148915 28148915 T G STX12 3'UTR 0.25 TCGA-77-7337-01 1 31465376 31465376 A T PUM1 Missense_Mutation p.M340K 0.04 tolerated_low_confidence(0.11) benign(0.012) TCGA-77-7337-01 1 39763352 39763352 C A MACF1 Silent p.R811R 0.30 TCGA-77-7337-01 1 60359149 60359149 T C CYP2J2 3'UTR 0.39 TCGA-77-7337-01 1 6525156 6525179 TCACAGGCCTGGCAGCGGGCACAT - TNFRSF25 In_Frame_Del p.E88_C95del 0.09 TCGA-77-7337-01 1 65849914 65849914 G A DNAJC6 Missense_Mutation p.M235I 0.25 deleterious(0.02) benign(0.198) TCGA-77-7337-01 1 6635061 6635061 C G TAS1R1 Missense_Mutation p.T290S 0.51 tolerated(0.61) benign(0) TCGA-77-7337-01 1 67880868 67880868 C T SERBP1 Missense_Mutation p.R384H 0.30 tolerated(0.51) benign(0.009) TCGA-77-7337-01 1 77806088 77806088 C T AK5 Silent p.F242F 0.32 TCGA-77-7337-01 1 7863823 7863823 A T PER3 Missense_Mutation p.I350F 0.52 deleterious(0) possibly_damaging(0.803) TCGA-77-7337-01 1 86820377 86820377 T A ODF2L Splice_Site p.X535_splice 0.26 TCGA-77-7337-01 1 91182293 91182293 G C BARHL2 Missense_Mutation p.L154V 0.30 deleterious(0.03) unknown(0) TCGA-77-7337-01 1 948886 948886 G C ISG15 5'UTR 0.11 TCGA-77-7337-01 1 986883 986883 G A AGRN Silent p.Q1807Q 0.18 TCGA-77-7337-01 20 18794553 18794553 G A SCP2D1 Missense_Mutation p.A32T 0.35 tolerated(0.28) benign(0.005) TCGA-77-7337-01 20 35060795 35060795 T C DLGAP4 Silent p.S225S 0.45 TCGA-77-7337-01 20 42907628 42907628 T A GDAP1L1 Nonsense_Mutation p.C264* 0.30 TCGA-77-7337-01 20 47305237 47305237 C T PREX1 Missense_Mutation p.R431H 0.41 deleterious(0.04) probably_damaging(1) TCGA-77-7337-01 20 50255992 50255992 C G ATP9A Missense_Mutation p.D520H 0.26 deleterious(0) probably_damaging(0.971) TCGA-77-7337-01 20 8608987 8608987 T A PLCB1 Missense_Mutation p.L98Q 0.43 tolerated(0.05) possibly_damaging(0.786) TCGA-77-7337-01 20 870885 870885 T A ANGPT4 Missense_Mutation p.I146F 0.28 deleterious(0) benign(0.003) TCGA-77-7337-01 21 32119483 32119483 C A KRTAP21-2 Missense_Mutation p.C13F 0.27 deleterious_low_confidence(0) unknown(0) TCGA-77-7337-01 21 34625066 34625066 C T IFNAR2 Missense_Mutation p.H214Y 0.23 tolerated(0.12) benign(0.269) TCGA-77-7337-01 21 37618952 37618952 C T DOPEY2 Silent p.S1558S 0.13 TCGA-77-7337-01 21 39795352 39795352 C - ERG Frame_Shift_Del p.R130Pfs*25 0.22 TCGA-77-7337-01 21 45861727 45861727 G T TRPM2 3'UTR 0.24 TCGA-77-7337-01 22 32810199 32810199 A G BPIFC 3'UTR 0.42 TCGA-77-7337-01 22 37524797 37524797 T A IL2RB Missense_Mutation p.K332M 0.45 deleterious(0) probably_damaging(0.987) TCGA-77-7337-01 2 102476321 102476321 C T MAP4K4 Nonsense_Mutation p.R567* 0.44 TCGA-77-7337-01 2 110922267 110922267 C G NPHP1 Missense_Mutation p.E257Q 0.26 deleterious(0.03) benign(0.272) TCGA-77-7337-01 2 113765561 113765561 C G IL36A Missense_Mutation p.I139M 0.52 deleterious(0.01) possibly_damaging(0.873) TCGA-77-7337-01 2 116525924 116525924 C A DPP10 Missense_Mutation p.P393T 0.57 deleterious(0.01) probably_damaging(0.944) TCGA-77-7337-01 2 128477807 128477807 G T WDR33 Missense_Mutation p.P598T 0.15 tolerated_low_confidence(0.07) unknown(0) TCGA-77-7337-01 2 128747232 128747232 T A SAP130 Silent p.T588T 0.47 TCGA-77-7337-01 2 133541148 133541148 G A NCKAP5 Missense_Mutation p.T1079M 0.42 deleterious(0.05) benign(0.235) TCGA-77-7337-01 2 135744898 135744898 T A MAP3K19 Missense_Mutation p.N515I 0.47 deleterious(0.01) possibly_damaging(0.653) TCGA-77-7337-01 2 136362568 136362568 G A R3HDM1 Silent p.E51E 0.18 TCGA-77-7337-01 2 136562564 136562565 GT - LCT Frame_Shift_Del p.P1413Tfs*4 0.30 TCGA-77-7337-01 2 152534231 152534231 T C NEB Missense_Mutation p.I1208V 0.43 benign(0.322) TCGA-77-7337-01 2 155555407 155555407 G C KCNJ3 Missense_Mutation p.K40N 0.49 tolerated(0.06) benign(0.193) TCGA-77-7337-01 2 170030430 170030430 G A LRP2 Silent p.C3671C 0.20 TCGA-77-7337-01 2 17692198 17692198 G C RAD51AP2 Nonsense_Mutation p.S1118* 0.13 TCGA-77-7337-01 2 179441417 179441417 C T TTN Missense_Mutation p.R23185Q 0.51 TCGA-77-7337-01 2 189875404 189875404 G C COL3A1 Missense_Mutation p.D1348H 0.53 unknown(0) TCGA-77-7337-01 2 202137620 202137620 G C CASP8 Splice_Site p.X243_splice 0.58 TCGA-77-7337-01 2 202687567 202687567 G T CDK15 Missense_Mutation p.V162L 0.62 deleterious(0.02) probably_damaging(0.998) TCGA-77-7337-01 2 203806671 203806671 G C CARF Missense_Mutation p.E16Q 0.06 tolerated_low_confidence(0.11) benign(0.041) TCGA-77-7337-01 2 207174735 207174736 - G ZDBF2 Frame_Shift_Ins p.K1830Efs*11 0.38 TCGA-77-7337-01 2 209035716 209035716 C T C2orf80 Missense_Mutation p.E176K 0.35 tolerated_low_confidence(0.61) benign(0.006) TCGA-77-7337-01 2 24244517 24244517 G C MFSD2B Splice_Site p.X228_splice 0.29 TCGA-77-7337-01 2 28739733 28739733 A G PLB1 Silent p.P38P 0.25 TCGA-77-7337-01 2 39456539 39456539 C G CDKL4 Missense_Mutation p.K45N 0.18 tolerated(0.12) possibly_damaging(0.539) TCGA-77-7337-01 2 90193270 90193270 C G IGKV1D-13 Missense_Mutation p.P66R 0.46 deleterious(0) probably_damaging(0.972) TCGA-77-7337-01 3 107940995 107940995 C T IFT57 Missense_Mutation p.E59K 0.19 tolerated(0.12) benign(0.026) TCGA-77-7337-01 3 111312603 111312603 A G ZBED2 Missense_Mutation p.M149T 0.50 deleterious(0) benign(0.012) TCGA-77-7337-01 3 111312611 111312611 C A ZBED2 Silent p.V146V 0.26 TCGA-77-7337-01 3 111632443 111632443 C G PHLDB2 Missense_Mutation p.T538S 0.20 tolerated(0.73) benign(0) TCGA-77-7337-01 3 114069816 114069816 G C ZBTB20 Missense_Mutation p.P370R 0.12 deleterious(0) probably_damaging(0.987) TCGA-77-7337-01 3 115394871 115394871 T C GAP43 Silent p.N50N 0.26 TCGA-77-7337-01 3 129694752 129694752 G A TRH Silent p.Q31Q 0.18 TCGA-77-7337-01 3 129694753 129694753 G A TRH Missense_Mutation p.E32K 0.16 deleterious(0.01) probably_damaging(0.961) TCGA-77-7337-01 3 132948155 132948155 C A TMEM108 5'UTR 0.16 TCGA-77-7337-01 3 1367498 1367498 G C CNTN6 Splice_Site p.X316_splice 0.19 TCGA-77-7337-01 3 137484123 137484123 A T SOX14 Missense_Mutation p.Y166F 0.20 tolerated(0.15) benign(0.017) TCGA-77-7337-01 3 138738712 138738712 C A PRR23B Missense_Mutation p.Q264H 0.23 deleterious(0) benign(0.003) TCGA-77-7337-01 3 1424693 1424693 C T CNTN6 Missense_Mutation p.S745L 0.38 deleterious(0.04) benign(0.007) TCGA-77-7337-01 3 148583095 148583095 A G CPA3 Translation_Start_Site p.M1? 0.32 deleterious(0) probably_damaging(0.978) TCGA-77-7337-01 3 151046493 151046493 A G P2RY13 Silent p.R117R 0.17 TCGA-77-7337-01 3 154834271 154834271 T C MME Missense_Mutation p.V121A 0.16 deleterious(0.05) probably_damaging(0.947) TCGA-77-7337-01 3 170725020 170725020 C G SLC2A2 Missense_Mutation p.G177R 0.24 deleterious(0) probably_damaging(0.992) TCGA-77-7337-01 3 172642042 172642042 G C SPATA16 Missense_Mutation p.R432G 0.17 deleterious(0) benign(0.433) TCGA-77-7337-01 3 183670969 183670969 C T ABCC5 Missense_Mutation p.A858T 0.18 tolerated(0.21) benign(0.028) TCGA-77-7337-01 3 186518980 186518980 G T RFC4 Missense_Mutation p.P46T 0.43 deleterious(0) probably_damaging(1) TCGA-77-7337-01 3 193042789 193042789 T A ATP13A5 Missense_Mutation p.H513L 0.15 deleterious(0.01) probably_damaging(0.93) TCGA-77-7337-01 3 194373853 194373853 C G LSG1 Missense_Mutation p.D260H 0.21 tolerated(0.09) benign(0.289) TCGA-77-7337-01 3 38065932 38065932 C G PLCD1 5'UTR 0.33 TCGA-77-7337-01 3 3886428 3886428 C T LRRN1 Missense_Mutation p.L35F 0.32 tolerated(0.29) possibly_damaging(0.458) TCGA-77-7337-01 3 48608081 48608081 C A COL7A1 Silent p.P2445P 0.40 TCGA-77-7337-01 3 49349052 49349052 G A USP4 Missense_Mutation p.S244F 0.08 tolerated(0.32) possibly_damaging(0.56) TCGA-77-7337-01 3 49697982 49697982 C G BSN Missense_Mutation p.P2902A 0.05 unknown(0) TCGA-77-7337-01 3 56026131 56026131 C A ERC2 Nonsense_Mutation p.E737* 0.34 TCGA-77-7337-01 3 97868478 97868478 C T OR5H14 Silent p.I83I 0.20 TCGA-77-7337-01 3 97983392 97983392 G A OR5H6 Silent p.S88S 0.40 TCGA-77-7337-01 4 108614956 108614956 T C PAPSS1 Missense_Mutation p.I128V 0.10 tolerated(0.06) benign(0.002) TCGA-77-7337-01 4 109748302 109748302 A T COL25A1 Missense_Mutation p.Y585N 0.24 tolerated(0.28) possibly_damaging(0.841) TCGA-77-7337-01 4 110790872 110790872 G C LRIT3 Missense_Mutation p.A323P 0.25 deleterious(0) probably_damaging(1) TCGA-77-7337-01 4 134073102 134073102 G T PCDH10 Missense_Mutation p.V603L 0.35 deleterious(0.01) benign(0.42) TCGA-77-7337-01 4 147824870 147824870 C A TTC29 Missense_Mutation p.D138Y 0.32 deleterious(0) possibly_damaging(0.519) TCGA-77-7337-01 4 149075736 149075736 C T NR3C2 Missense_Mutation p.M777I 0.30 deleterious(0.01) benign(0.137) TCGA-77-7337-01 4 151000293 151000293 C A DCLK2 Silent p.G38G 0.13 TCGA-77-7337-01 4 151835459 151835459 G A LRBA Missense_Mutation p.T350I 0.31 deleterious(0) probably_damaging(0.999) TCGA-77-7337-01 4 169167666 169167666 G T DDX60 Missense_Mutation p.P1356H 0.05 deleterious(0) probably_damaging(1) TCGA-77-7337-01 4 170913341 170913341 A T MFAP3L Missense_Mutation p.L140M 0.15 deleterious(0.02) probably_damaging(0.967) TCGA-77-7337-01 4 174253378 174253378 T C HMGB2 Silent p.A161A 0.21 TCGA-77-7337-01 4 174292511 174292511 G T SAP30 Missense_Mutation p.G60W 0.50 deleterious(0) probably_damaging(0.995) TCGA-77-7337-01 4 176573029 176573029 G T GPM6A Missense_Mutation p.T166K 0.24 tolerated(0.07) benign(0.272) TCGA-77-7337-01 4 30921816 30921816 G A PCDH7 Silent p.Q1072Q 0.28 TCGA-77-7337-01 4 38776576 38776576 C T TLR10 Silent p.K212K 0.23 TCGA-77-7337-01 4 41526432 41526432 G A LIMCH1 Silent p.L58L 0.27 TCGA-77-7337-01 4 46305618 46305618 C - GABRA2 Frame_Shift_Del p.V239* 0.21 TCGA-77-7337-01 4 55144136 55144136 G A PDGFRA Silent p.L655L 0.28 TCGA-77-7337-01 4 5691051 5691051 G A EVC2 Missense_Mutation p.A180V 0.23 tolerated(0.45) benign(0.035) TCGA-77-7337-01 4 57180921 57180921 A T KIAA1211 Missense_Mutation p.Q418L 0.29 tolerated(0.44) unknown(0) TCGA-77-7337-01 4 7435143 7435143 G C PSAPL1 Missense_Mutation p.F488L 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-77-7337-01 4 77651996 77651996 A T SHROOM3 Silent p.T165T 0.19 TCGA-77-7337-01 4 88116586 88116586 C T KLHL8 Missense_Mutation p.G36S 0.21 tolerated_low_confidence(0.49) benign(0.001) TCGA-77-7337-01 4 94006244 94006244 C G GRID2 Missense_Mutation p.P115A 0.18 deleterious(0.01) probably_damaging(1) TCGA-77-7337-01 4 96469951 96469951 G T UNC5C Missense_Mutation p.L20M 0.18 tolerated_low_confidence(0.18) possibly_damaging(0.665) TCGA-77-7337-01 5 102520380 102520380 C A PPIP5K2 Missense_Mutation p.S1035Y 0.26 deleterious_low_confidence(0) possibly_damaging(0.847) TCGA-77-7337-01 5 115815895 115815895 G T SEMA6A Missense_Mutation p.F391L 0.05 deleterious(0) probably_damaging(0.999) TCGA-77-7337-01 5 140744490 140744490 A G PCDHGA5 Missense_Mutation p.Q198R 0.32 tolerated_low_confidence(1) benign(0.004) TCGA-77-7337-01 5 145531445 145531445 G A LARS Silent p.L469L 0.31 TCGA-77-7337-01 5 145972617 145972617 G A PPP2R2B Silent p.D326D 0.37 TCGA-77-7337-01 5 14716866 14716866 C G ANKH Missense_Mutation p.A364P 0.15 deleterious(0) probably_damaging(0.996) TCGA-77-7337-01 5 148521658 148521658 C A ABLIM3 5'UTR 0.35 TCGA-77-7337-01 5 156890127 156890127 C A NIPAL4 Silent p.S83S 0.42 TCGA-77-7337-01 5 160097645 160097645 C T ATP10B Nonsense_Mutation p.W167* 0.32 TCGA-77-7337-01 5 167824744 167824744 C A WWC1 Nonsense_Mutation p.S150* 0.35 TCGA-77-7337-01 5 170222209 170222209 C T GABRP Intron 0.27 TCGA-77-7337-01 5 176025673 176025673 A G GPRIN1 Missense_Mutation p.V388A 0.32 tolerated(0.14) benign(0.036) TCGA-77-7337-01 5 1814555 1814555 C T NDUFS6 Missense_Mutation p.P97S 0.62 deleterious(0) possibly_damaging(0.835) TCGA-77-7337-01 5 37725059 37725059 G C WDR70 Missense_Mutation p.E541Q 0.16 tolerated(0.63) benign(0.061) TCGA-77-7337-01 5 40716514 40716514 G A TTC33 Silent p.L174L 0.12 TCGA-77-7337-01 5 442867 442867 C G C5orf55 Missense_Mutation p.R24P 0.19 deleterious_low_confidence(0) possibly_damaging(0.655) TCGA-77-7337-01 5 53409200 53409200 T A ARL15 Missense_Mutation p.Q98H 0.43 deleterious(0.01) probably_damaging(0.984) TCGA-77-7337-01 5 5463162 5463162 G C KIAA0947 Missense_Mutation p.E1239Q 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-77-7337-01 5 64484000 64484000 C T ADAMTS6 Missense_Mutation p.G918E 0.40 deleterious(0) probably_damaging(0.999) TCGA-77-7337-01 5 68498395 68498395 A T CENPH Missense_Mutation p.Q145L 0.39 deleterious(0) probably_damaging(0.932) TCGA-77-7337-01 5 79733192 79733192 A G ZFYVE16 Missense_Mutation p.K230E 0.48 tolerated(0.62) benign(0.006) TCGA-77-7337-01 5 94803689 94803689 T C TTC37 Missense_Mutation p.T1501A 0.38 deleterious(0.04) benign(0.333) TCGA-77-7337-01 6 106547417 106547417 G C PRDM1 Missense_Mutation p.M218I 0.17 tolerated(0.06) benign(0.007) TCGA-77-7337-01 6 109814711 109814711 A G AK9 Missense_Mutation p.M1866T 0.21 tolerated(0.12) benign(0.076) TCGA-77-7337-01 6 110763506 110763506 G T SLC22A16 Nonsense_Mutation p.S375* 0.22 TCGA-77-7337-01 6 112476062 112476062 C - LAMA4 Frame_Shift_Del p.A683Qfs*20 0.21 TCGA-77-7337-01 6 126661317 126661317 G A CENPW 5'Flank 0.29 TCGA-77-7337-01 6 129612779 129612779 G T LAMA2 Missense_Mutation p.G924C 0.24 deleterious(0) probably_damaging(0.998) TCGA-77-7337-01 6 129927093 129927093 T G ARHGAP18 Missense_Mutation p.K432Q 0.27 tolerated(0.53) benign(0.035) TCGA-77-7337-01 6 136698892 136698892 C A MAP7 Splice_Site p.X273_splice 0.39 TCGA-77-7337-01 6 146755768 146755768 G A GRM1 Missense_Mutation p.D1141N 0.11 tolerated_low_confidence(0.11) benign(0.208) TCGA-77-7337-01 6 152443687 152443687 C T SYNE1 Missense_Mutation p.G8760R 0.16 probably_damaging(1) TCGA-77-7337-01 6 161990400 161990400 A G PARK2 Missense_Mutation p.L307P 0.30 deleterious(0) probably_damaging(0.998) TCGA-77-7337-01 6 168479623 168479623 G T FRMD1 Nonsense_Mutation p.S51* 0.27 TCGA-77-7337-01 6 25851107 25851107 T A SLC17A3 Splice_Site p.X238_splice 0.12 TCGA-77-7337-01 6 26032189 26032189 C A HIST1H3B Missense_Mutation p.G34C 0.21 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-77-7337-01 6 26043846 26043846 C G HIST1H2BB Missense_Mutation p.G14R 0.09 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-77-7337-01 6 30652917 30652917 T C PPP1R18 Silent p.A293A 0.10 TCGA-77-7337-01 6 31916163 31916163 G A CFB Missense_Mutation p.G806S 0.35 tolerated(0.1) probably_damaging(0.971) TCGA-77-7337-01 6 32154174 32154174 A G PBX2 Silent p.S426S 0.36 TCGA-77-7337-01 6 45922955 45922955 G T CLIC5 Silent p.G189G 0.20 TCGA-77-7337-01 6 51514015 51514015 A G PKHD1 Silent p.N3726N 0.26 TCGA-77-7337-01 6 51751953 51751953 T G PKHD1 Missense_Mutation p.N2363H 0.22 deleterious(0) probably_damaging(1) TCGA-77-7337-01 6 51777279 51777279 C A PKHD1 Missense_Mutation p.G2073W 0.23 deleterious(0) possibly_damaging(0.621) TCGA-77-7337-01 6 53519742 53519742 C G KLHL31 Missense_Mutation p.R110T 0.23 tolerated(0.35) possibly_damaging(0.601) TCGA-77-7337-01 6 57472390 57472390 G T PRIM2 3'UTR 0.10 TCGA-77-7337-01 6 70897910 70897910 C A COL19A1 Missense_Mutation p.H996Q 0.18 tolerated(0.35) benign(0.115) TCGA-77-7337-01 6 74104613 74104613 G A DDX43 5'UTR 0.26 TCGA-77-7337-01 6 93955137 93955137 C T EPHA7 Missense_Mutation p.D921N 0.23 deleterious(0.02) benign(0.373) TCGA-77-7337-01 6 93955152 93955152 C - EPHA7 Frame_Shift_Del p.D916Ifs*40 0.15 TCGA-77-7337-01 6 97063664 97063664 C A FHL5 3'UTR 0.13 TCGA-77-7337-01 6 97246889 97246889 T A GPR63 Missense_Mutation p.Q240L 0.18 tolerated(0.24) benign(0.012) TCGA-77-7337-01 6 97339236 97339236 T G NDUFAF4 Missense_Mutation p.K91T 0.30 tolerated(0.16) possibly_damaging(0.547) TCGA-77-7337-01 7 100153279 100153279 C T AGFG2 Silent p.S266S 0.24 TCGA-77-7337-01 7 108204991 108204991 C T THAP5 Missense_Mutation p.A278T 0.22 tolerated(1) benign(0) TCGA-77-7337-01 7 131815212 131815212 C A PLXNA4 3'UTR 0.28 TCGA-77-7337-01 7 148802040 148802040 C - ZNF425 Frame_Shift_Del p.G308Afs*34 0.22 TCGA-77-7337-01 7 150554114 150554114 G T AOC1 Missense_Mutation p.D186Y 0.29 tolerated(0.17) probably_damaging(0.924) TCGA-77-7337-01 7 151962133 151962133 G A KMT2C Nonsense_Mutation p.Q392* 0.05 TCGA-77-7337-01 7 158534315 158534315 T C ESYT2 Silent p.P716P 0.17 TCGA-77-7337-01 7 37272754 37272754 C T ELMO1 Silent p.L165L 0.41 TCGA-77-7337-01 7 62752419 62752419 C A ZNF733P RNA 0.29 TCGA-77-7337-01 7 62752626 62752626 C T ZNF733P RNA 0.17 TCGA-77-7337-01 7 92146854 92146854 C G PEX1 Missense_Mutation p.E325D 0.34 tolerated(0.32) benign(0.003) TCGA-77-7337-01 7 95657548 95657548 A G DYNC1I1 Missense_Mutation p.Y361C 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-77-7337-01 8 113323339 113323339 C A CSMD3 Missense_Mutation p.G2585C 0.21 deleterious(0) probably_damaging(0.998) TCGA-77-7337-01 8 113364658 113364658 C A CSMD3 Missense_Mutation p.G2081V 0.57 deleterious(0) probably_damaging(0.994) TCGA-77-7337-01 8 113418918 113418918 G T CSMD3 Missense_Mutation p.P1882T 0.39 deleterious(0.01) probably_damaging(0.922) TCGA-77-7337-01 8 124664373 124664373 G C KLHL38 Missense_Mutation p.T265S 0.09 tolerated(0.74) benign(0.004) TCGA-77-7337-01 8 139890085 139890085 G A COL22A1 Missense_Mutation p.A189V 0.20 unknown(0) TCGA-77-7337-01 8 142178183 142178183 G T DENND3 Missense_Mutation p.A532S 0.24 tolerated(0.94) benign(0.002) TCGA-77-7337-01 8 1574993 1574993 C A DLGAP2 Silent p.S430S 0.50 TCGA-77-7337-01 8 20107557 20107557 C A LZTS1 Silent p.G489G 0.45 TCGA-77-7337-01 8 27886837 27886837 C T NUGGC Silent p.E700E 0.17 TCGA-77-7337-01 8 37697139 37697139 C A GPR124 Missense_Mutation p.A837E 0.08 deleterious(0) probably_damaging(0.999) TCGA-77-7337-01 8 38865450 38865450 C G ADAM9 Missense_Mutation p.P48R 0.16 deleterious(0) probably_damaging(1) TCGA-77-7337-01 8 38869184 38869184 A T ADAM9 Missense_Mutation p.Y68F 0.18 tolerated(0.08) probably_damaging(0.999) TCGA-77-7337-01 8 42163932 42163932 G T IKBKB Silent p.V183V 0.10 TCGA-77-7337-01 8 42693172 42693172 T A THAP1 Missense_Mutation p.D192V 0.15 tolerated(0.21) benign(0.006) TCGA-77-7337-01 8 48874091 48874091 C A MCM4 Missense_Mutation p.A29D 0.21 tolerated(0.63) benign(0.095) TCGA-77-7337-01 8 52320853 52320853 A G PXDNL Missense_Mutation p.W1111R 0.15 tolerated(0.21) benign(0) TCGA-77-7337-01 8 54730009 54730009 A C ATP6V1H Missense_Mutation p.L130V 0.20 deleterious(0.01) benign(0.077) TCGA-77-7337-01 8 56436316 56436316 G C XKR4 Missense_Mutation p.V495L 0.05 deleterious(0) benign(0.153) TCGA-77-7337-01 8 75898298 75898298 G T CRISPLD1 Missense_Mutation p.V26F 0.34 deleterious(0.01) benign(0.11) TCGA-77-7337-01 8 75898356 75898356 A T CRISPLD1 Missense_Mutation p.E45V 0.35 tolerated(0.16) possibly_damaging(0.489) TCGA-77-7337-01 8 76468222 76468222 A G HNF4G Silent p.A207A 0.25 TCGA-77-7337-01 9 101068510 101068510 C A GABBR2 Missense_Mutation p.A708S 0.26 tolerated(0.17) benign(0.349) TCGA-77-7337-01 9 114538131 114538131 C T C9orf84 Missense_Mutation p.E64K 0.19 deleterious(0.04) benign(0.434) TCGA-77-7337-01 9 117266827 117266827 C A DFNB31 Silent p.P85P 0.25 TCGA-77-7337-01 9 117266829 117266829 G A DFNB31 Missense_Mutation p.P85S 0.24 tolerated(0.09) possibly_damaging(0.607) TCGA-77-7337-01 9 120476358 120476358 T A TLR4 Missense_Mutation p.V651D 0.17 deleterious(0) possibly_damaging(0.726) TCGA-77-7337-01 9 121976167 121976167 C T BRINP1 Intron 0.15 TCGA-77-7337-01 9 126132436 126132436 G A CRB2 Silent p.L368L 0.14 TCGA-77-7337-01 9 13106902 13106902 T G MPDZ 3'UTR 0.53 TCGA-77-7337-01 9 135802587 135802587 C G TSC1 Splice_Site p.X70_splice 0.32 TCGA-77-7337-01 9 14813012 14813012 A G FREM1 Silent p.P897P 0.34 TCGA-77-7337-01 9 21333055 21333055 C G KLHL9 Missense_Mutation p.G602R 0.25 tolerated(0.3) benign(0.004) TCGA-77-7337-01 9 74349891 74349891 G T TMEM2 Missense_Mutation p.F408L 0.17 tolerated(0.07) benign(0.023) TCGA-77-7337-01 9 91617133 91617133 A G S1PR3 Missense_Mutation p.S340G 0.24 tolerated(0.09) possibly_damaging(0.505) TCGA-77-7337-01 X 100630171 100630171 C T BTK Silent p.V34V 0.07 TCGA-77-7337-01 X 101576793 101576793 A G NXF2 Missense_Mutation p.K430R 0.19 tolerated(0.07) benign(0.051) TCGA-77-7337-01 X 123519703 123519703 A T TENM1 Missense_Mutation p.L1967Q 0.47 tolerated(0.34) possibly_damaging(0.737) TCGA-77-7337-01 X 127185667 127185667 G A ACTRT1 Silent p.S173S 0.21 TCGA-77-7337-01 X 13056512 13056512 T C FAM9C 3'UTR 0.43 TCGA-77-7337-01 X 148796170 148796170 C G MAGEA11 Missense_Mutation p.F42L 0.32 tolerated_low_confidence(0.18) possibly_damaging(0.483) TCGA-77-7337-01 X 14891874 14891874 G A MOSPD2 Missense_Mutation p.V25M 0.43 tolerated(0.12) benign(0.009) TCGA-77-7337-01 X 1505541 1505541 C - SLC25A6 Frame_Shift_Del p.G284Afs*14 0.21 TCGA-77-7337-01 X 153043799 153043799 G A SRPK3 5'Flank 0.32 TCGA-77-7337-01 X 18845445 18845445 A T PPEF1 Missense_Mutation p.H601L 0.59 deleterious(0) probably_damaging(0.973) TCGA-77-7337-01 X 56259697 56259697 C A KLF8 5'UTR 0.55 TCGA-77-7337-01 X 70643852 70643852 A C TAF1 Missense_Mutation p.K1555T 0.61 deleterious(0.02) probably_damaging(0.992) TCGA-77-7337-01 X 73046593 73046593 A T XIST RNA 0.45 TCGA-77-7337-01 X 73069161 73069161 C A XIST RNA 0.34 TCGA-77-7337-01 X 73962186 73962186 C T KIAA2022 Missense_Mutation p.A736T 0.53 tolerated(0.15) benign(0.021) TCGA-77-7337-01 Y 4967907 4967907 G T PCDH11Y Missense_Mutation p.G763V 0.40 deleterious(0) probably_damaging(1) TCGA-77-7338-01 10 104173789 104173789 G A PSD Silent p.A430A 0.26 TCGA-77-7338-01 10 117884861 117884861 C A GFRA1 Missense_Mutation p.C214F 0.14 deleterious(0) probably_damaging(1) TCGA-77-7338-01 10 16911713 16911713 T C CUBN Missense_Mutation p.N3126D 0.11 deleterious(0.03) benign(0.064) TCGA-77-7338-01 10 52587978 52587978 A G A1CF Missense_Mutation p.S236P 0.12 deleterious(0.02) possibly_damaging(0.886) TCGA-77-7338-01 11 121178119 121178119 C G SC5D Silent p.L266L 0.32 TCGA-77-7338-01 11 31812318 31812318 G T PAX6 Missense_Mutation p.P389T 0.24 tolerated(0.05) benign(0.037) TCGA-77-7338-01 11 56409530 56409530 T C OR5AP2 Missense_Mutation p.Y129C 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-77-7338-01 11 57971391 57971391 G C OR1S2 Missense_Mutation p.S88C 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-77-7338-01 11 57996190 57996190 A C OR10Q1 Missense_Mutation p.V53G 0.09 deleterious(0) probably_damaging(0.982) TCGA-77-7338-01 11 58125803 58125803 A T OR5B17 Missense_Mutation p.F247Y 0.20 deleterious_low_confidence(0.01) benign(0.1) TCGA-77-7338-01 11 58170452 58170452 A G OR5B3 Missense_Mutation p.I144T 0.21 tolerated_low_confidence(0.29) benign(0.03) TCGA-77-7338-01 11 60695145 60695145 A G TMEM132A Silent p.Q116Q 0.14 TCGA-77-7338-01 11 66102474 66102474 G C RIN1 Missense_Mutation p.P266A 0.28 deleterious(0.03) probably_damaging(0.997) TCGA-77-7338-01 11 94532792 94532792 C G AMOTL1 Missense_Mutation p.Q146E 0.09 tolerated(0.07) benign(0.103) TCGA-77-7338-01 12 117664517 117664517 A T NOS1 Silent p.A1259A 0.25 TCGA-77-7338-01 12 13716125 13716125 A G GRIN2B Silent p.F1349F 0.23 TCGA-77-7338-01 12 2062291 2062291 C A DCP1B Missense_Mutation p.R272L 0.38 deleterious(0.01) possibly_damaging(0.749) TCGA-77-7338-01 12 2602426 2602426 C T CACNA1C Silent p.G329G 0.20 TCGA-77-7338-01 12 32136803 32136803 C T KIAA1551 Nonsense_Mutation p.Q972* 0.06 TCGA-77-7338-01 12 40044042 40044042 G A C12orf40 Missense_Mutation p.R191H 0.32 tolerated(0.15) benign(0.008) TCGA-77-7338-01 12 42858856 42858856 G C PRICKLE1 Nonsense_Mutation p.S327* 0.24 TCGA-77-7338-01 12 4724865 4724865 G T AKAP3 3'UTR 0.23 TCGA-77-7338-01 12 71918237 71918237 C T LGR5 Silent p.G112G 0.24 TCGA-77-7338-01 12 7633841 7633841 C T CD163 Missense_Mutation p.G1087R 0.16 tolerated(0.36) benign(0.139) TCGA-77-7338-01 13 26971328 26971329 AT - CDK8 Frame_Shift_Del p.H300Qfs*3 0.14 TCGA-77-7338-01 13 27332896 27332896 C G GPR12 3'UTR 0.25 TCGA-77-7338-01 13 49089368 49089368 C T RCBTB2 Missense_Mutation p.G108S 0.07 deleterious(0) possibly_damaging(0.695) TCGA-77-7338-01 13 73636203 73636203 C A KLF5 Missense_Mutation p.P156T 0.04 tolerated(0.07) benign(0.01) TCGA-77-7338-01 13 92051435 92051435 C A GPC5 Silent p.V45V 0.23 TCGA-77-7338-01 14 101493480 101493480 G A MIR329-2 RNA 0.35 TCGA-77-7338-01 14 105418424 105418424 C A AHNAK2 Missense_Mutation p.V1122L 0.37 benign(0.031) TCGA-77-7338-01 14 23900109 23900109 C T MYH7 Splice_Site p.X299_splice 0.12 TCGA-77-7338-01 14 57052591 57052591 G T TMEM260 Missense_Mutation p.G102V 0.33 deleterious(0) possibly_damaging(0.864) TCGA-77-7338-01 14 70925401 70925401 T A ADAM21 Missense_Mutation p.H395Q 0.10 tolerated(0.26) benign(0.063) TCGA-77-7338-01 14 78028817 78028817 T A SPTLC2 Missense_Mutation p.S258C 0.41 deleterious(0) possibly_damaging(0.881) TCGA-77-7338-01 15 23890582 23890582 G T MAGEL2 Missense_Mutation p.P167T 0.14 deleterious_low_confidence(0) possibly_damaging(0.476) TCGA-77-7338-01 15 42740898 42740898 C T ZNF106 Missense_Mutation p.G813D 0.15 deleterious(0) probably_damaging(0.992) TCGA-77-7338-01 15 42743849 42743849 A G ZNF106 Silent p.G184G 0.32 TCGA-77-7338-01 15 43045264 43045264 C T TTBK2 Missense_Mutation p.R727K 0.08 tolerated_low_confidence(0.15) benign(0.003) TCGA-77-7338-01 15 71184375 71184375 C G THAP10 Silent p.L79L 0.10 TCGA-77-7338-01 15 74239463 74239463 G T LOXL1 Missense_Mutation p.G469C 0.13 deleterious(0) probably_damaging(1) TCGA-77-7338-01 15 77473366 77473366 C G PEAK1 Silent p.L301L 0.04 TCGA-77-7338-01 15 86198828 86198828 G C AKAP13 Missense_Mutation p.E1519Q 0.16 deleterious(0) probably_damaging(0.953) TCGA-77-7338-01 16 1633365 1633365 C G IFT140 Missense_Mutation p.G461A 0.21 deleterious(0.01) possibly_damaging(0.784) TCGA-77-7338-01 16 51175901 51175901 G A SALL1 Missense_Mutation p.P78S 0.21 tolerated(0.13) probably_damaging(0.998) TCGA-77-7338-01 16 51175902 51175902 A T SALL1 Missense_Mutation p.N77K 0.21 deleterious(0.01) benign(0.069) TCGA-77-7338-01 16 84513559 84513559 C A TLDC1 Missense_Mutation p.R444L 0.17 tolerated(0.52) benign(0.006) TCGA-77-7338-01 16 86544714 86544714 C T FOXF1 Missense_Mutation p.S180L 0.18 deleterious(0.01) benign(0.217) TCGA-77-7338-01 17 10265526 10265526 C G MYH13 Missense_Mutation p.E138D 0.31 deleterious(0.04) benign(0.104) TCGA-77-7338-01 17 27959504 27959504 C A SSH2 Missense_Mutation p.R876L 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-77-7338-01 17 42636592 42636592 G A FZD2 Silent p.P512P 0.24 TCGA-77-7338-01 17 59668171 59668171 C A NACA2 Missense_Mutation p.G124V 0.07 deleterious(0) probably_damaging(0.949) TCGA-77-7338-01 17 60799894 60799894 A G MARCH10 Silent p.G723G 0.17 TCGA-77-7338-01 17 62029027 62029027 C T SCN4A Silent p.A870A 0.39 TCGA-77-7338-01 17 63898288 63898288 G C CEP112 Missense_Mutation p.F715L 0.09 tolerated(0.68) benign(0.005) TCGA-77-7338-01 17 7578454 7578454 G A TP53 Missense_Mutation p.A159V 0.33 deleterious(0) possibly_damaging(0.9) TCGA-77-7338-01 17 80046929 80046929 C A FASN Silent p.V740V 0.26 TCGA-77-7338-01 18 3189060 3189060 C A MYOM1 Missense_Mutation p.D153Y 0.23 deleterious(0) benign(0.005) TCGA-77-7338-01 18 5398045 5398045 G T EPB41L3 Missense_Mutation p.T816N 0.24 tolerated(0.06) benign(0.236) TCGA-77-7338-01 18 63489321 63489321 C T CDH7 Silent p.V210V 0.12 TCGA-77-7338-01 18 65179395 65179395 C T DSEL Silent p.L827L 0.21 TCGA-77-7338-01 18 67863839 67863839 G A RTTN Missense_Mutation p.R247C 0.25 deleterious(0.04) probably_damaging(0.939) TCGA-77-7338-01 18 72168662 72168662 G C CNDP2 Missense_Mutation p.K53N 0.19 tolerated(0.11) benign(0.005) TCGA-77-7338-01 19 10610402 10610402 G T KEAP1 Missense_Mutation p.S103Y 0.27 deleterious(0) probably_damaging(0.981) TCGA-77-7338-01 19 11943717 11943717 G C ZNF440 Missense_Mutation p.V576L 0.10 tolerated(0.57) benign(0.007) TCGA-77-7338-01 19 22586293 22586293 C G ZNF98 Missense_Mutation p.V18L 0.11 deleterious(0.02) probably_damaging(0.983) TCGA-77-7338-01 19 36351227 36351227 G A KIRREL2 Silent p.S234S 0.15 TCGA-77-7338-01 19 43859826 43859826 G C CD177 3'UTR 0.05 TCGA-77-7338-01 19 47941209 47941209 G A SLC8A2 Missense_Mutation p.T636I 0.23 deleterious(0.05) benign(0.03) TCGA-77-7338-01 19 54483242 54483242 G C CACNG8 Silent p.G163G 0.19 TCGA-77-7338-01 1 1337583 1337583 T C MRPL20 Silent p.P110P 0.36 TCGA-77-7338-01 1 144917614 144917614 G A PDE4DIP Missense_Mutation p.S497F 0.23 tolerated(0.26) possibly_damaging(0.789) TCGA-77-7338-01 1 149783604 149783604 G A HIST2H2BF Missense_Mutation p.S92F 0.10 deleterious_low_confidence(0.01) benign(0.432) TCGA-77-7338-01 1 149871699 149871699 C T BOLA1 Silent p.I29I 0.45 TCGA-77-7338-01 1 152281205 152281205 C G FLG Missense_Mutation p.D2053H 0.03 possibly_damaging(0.861) TCGA-77-7338-01 1 155209828 155209828 C G GBA Silent p.S52S 0.15 TCGA-77-7338-01 1 158585074 158585074 C T SPTA1 Silent p.Q2240Q 0.03 TCGA-77-7338-01 1 160099096 160099096 A T ATP1A2 Missense_Mutation p.K456M 0.21 deleterious(0) probably_damaging(0.996) TCGA-77-7338-01 1 160968669 160968669 G T F11R Missense_Mutation p.L298M 0.27 deleterious(0.01) probably_damaging(0.993) TCGA-77-7338-01 1 169519084 169519084 T C F5 Silent p.L522L 0.29 TCGA-77-7338-01 1 190067666 190067666 C A BRINP3 Missense_Mutation p.D595Y 0.17 deleterious(0) possibly_damaging(0.781) TCGA-77-7338-01 1 196879578 196879578 G A CFHR4 Missense_Mutation p.D322N 0.16 tolerated(0.45) benign(0.231) TCGA-77-7338-01 1 196927143 196927143 G C CFHR2 Missense_Mutation p.E185Q 0.38 tolerated(1) benign(0.007) TCGA-77-7338-01 1 22176632 22176632 C T HSPG2 Missense_Mutation p.E2450K 0.07 probably_damaging(0.999) TCGA-77-7338-01 1 240371477 240371477 C G FMN2 Missense_Mutation p.P1122R 0.28 unknown(0) TCGA-77-7338-01 1 248789651 248789651 T A OR2T11 Missense_Mutation p.Q260L 0.42 tolerated(0.19) benign(0.051) TCGA-77-7338-01 1 86227243 86227243 G C COL24A1 Missense_Mutation p.Q1461E 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-77-7338-01 1 99767427 99767427 A G LPPR4 Missense_Mutation p.I314V 0.53 tolerated(0.07) benign(0.13) TCGA-77-7338-01 20 34208873 34208873 T C SPAG4 Silent p.L415L 0.29 TCGA-77-7338-01 20 36850967 36850967 C T KIAA1755 Silent p.E767E 0.06 TCGA-77-7338-01 20 39792828 39792828 T - PLCG1 Frame_Shift_Del p.F402Lfs*78 0.28 TCGA-77-7338-01 20 60736500 60736500 G A SS18L1 Silent p.T80T 0.17 TCGA-77-7338-01 20 61873913 61873913 G A NKAIN4 Missense_Mutation p.L199F 0.26 deleterious(0.02) probably_damaging(0.977) TCGA-77-7338-01 21 46066880 46066880 T C KRTAP10-11 Missense_Mutation p.C169R 0.26 deleterious(0) unknown(0) TCGA-77-7338-01 21 46326965 46326965 G T ITGB2 Silent p.R65R 0.17 TCGA-77-7338-01 22 16267092 16267092 C G POTEH Missense_Mutation p.E453Q 0.06 deleterious(0.05) benign(0.031) TCGA-77-7338-01 22 18387397 18387397 C T MICAL3 Splice_Site p.X158_splice 0.23 TCGA-77-7338-01 22 23090201 23090201 C T IGLV3-16 Missense_Mutation p.P47L 0.41 deleterious(0.03) benign(0.218) TCGA-77-7338-01 22 31011416 31011416 G A TCN2 Missense_Mutation p.E237K 0.07 tolerated(0.09) benign(0.037) TCGA-77-7338-01 22 32756939 32756939 C G RFPL3 3'UTR 0.36 TCGA-77-7338-01 22 44966457 44966457 C T LINC00207 RNA 0.32 TCGA-77-7338-01 2 130738164 130738164 C G RAB6C Missense_Mutation p.A159G 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.51) TCGA-77-7338-01 2 180309680 180309680 C T ZNF385B Missense_Mutation p.D374N 0.18 deleterious(0) probably_damaging(0.998) TCGA-77-7338-01 2 196759935 196759935 T C DNAH7 Missense_Mutation p.D1554G 0.26 deleterious(0) probably_damaging(1) TCGA-77-7338-01 2 205986465 205986465 G A PARD3B Silent p.P319P 0.24 TCGA-77-7338-01 2 233351352 233351352 C A ECEL1 Silent p.P4P 0.22 TCGA-77-7338-01 2 26420565 26420565 C G HADHA Missense_Mutation p.E492Q 0.08 deleterious(0.05) probably_damaging(0.948) TCGA-77-7338-01 2 48873815 48873815 A G STON1-GTF2A1L Silent p.P908P 0.33 TCGA-77-7338-01 2 55481899 55481899 G A MTIF2 Missense_Mutation p.H132Y 0.27 tolerated(1) benign(0.001) TCGA-77-7338-01 2 80136829 80136829 C G CTNNA2 Missense_Mutation p.S321C 0.34 deleterious(0) probably_damaging(0.982) TCGA-77-7338-01 3 107097352 107097352 C G CCDC54 Missense_Mutation p.I306M 0.16 deleterious(0.04) possibly_damaging(0.61) TCGA-77-7338-01 3 113222068 113222068 C T SPICE1 Missense_Mutation p.V36M 0.48 deleterious(0.01) possibly_damaging(0.857) TCGA-77-7338-01 3 114014659 114014659 A T TIGIT Missense_Mutation p.Y110F 0.05 tolerated(0.49) benign(0.343) TCGA-77-7338-01 3 146167147 146167147 G C PLSCR2 Missense_Mutation p.S237C 0.16 deleterious(0) probably_damaging(0.987) TCGA-77-7338-01 3 153840187 153840187 C T ARHGEF26 Missense_Mutation p.P136S 0.21 tolerated_low_confidence(0.44) benign(0.003) TCGA-77-7338-01 3 189590660 189590660 G A TP63 Missense_Mutation p.E409K 0.38 deleterious(0) probably_damaging(0.997) TCGA-77-7338-01 3 193201725 193201725 C A ATP13A4 Missense_Mutation p.A270S 0.04 tolerated(0.43) benign(0.027) TCGA-77-7338-01 3 33155993 33155993 T A CRTAP Missense_Mutation p.F142I 0.50 deleterious(0.05) benign(0.238) TCGA-77-7338-01 4 109839349 109839349 A T COL25A1 Silent p.I253I 0.20 TCGA-77-7338-01 4 1800988 1800988 G T FGFR3 Silent p.P39P 0.21 TCGA-77-7338-01 4 30732500 30732500 G C PCDH7 Intron 0.23 TCGA-77-7338-01 4 39310448 39310448 C A RFC1 Missense_Mutation p.G565C 0.23 tolerated(0.08) benign(0.353) TCGA-77-7338-01 4 8609089 8609089 C A CPZ Nonsense_Mutation p.Y388* 0.13 TCGA-77-7338-01 4 88035821 88035822 - A AFF1 Frame_Shift_Ins p.P615Tfs*61 0.18 TCGA-77-7338-01 4 94006260 94006260 A T GRID2 Missense_Mutation p.Q120L 0.31 deleterious(0) probably_damaging(0.952) TCGA-77-7338-01 4 95173970 95173970 G C SMARCAD1 Missense_Mutation p.D365H 0.08 deleterious(0) possibly_damaging(0.5) TCGA-77-7338-01 5 137756495 137756495 G A KDM3B Silent p.K1272K 0.35 TCGA-77-7338-01 5 13786378 13786378 C A DNAH5 Silent p.L2910L 0.30 TCGA-77-7338-01 5 140746185 140746185 C A PCDHGA5 Nonsense_Mutation p.S763* 0.29 TCGA-77-7338-01 5 33616079 33616079 G C ADAMTS12 Missense_Mutation p.P748A 0.33 deleterious(0) probably_damaging(0.986) TCGA-77-7338-01 5 35039426 35039426 C G AGXT2 Intron 0.15 TCGA-77-7338-01 5 3599698 3599698 C A IRX1 Silent p.G212G 0.17 TCGA-77-7338-01 5 38482156 38482156 C G LIFR Silent p.V945V 0.32 TCGA-77-7338-01 5 63256347 63256347 G A HTR1A Silent p.Y400Y 0.23 TCGA-77-7338-01 6 118588319 118588319 T C SLC35F1 Splice_Site p.X213_splice 0.15 TCGA-77-7338-01 6 152717999 152717999 G A SYNE1 Silent p.I2489I 0.07 TCGA-77-7338-01 6 152734662 152734662 T A SYNE1 Nonsense_Mutation p.R2019* 0.12 TCGA-77-7338-01 6 152734663 152734663 T G SYNE1 Missense_Mutation p.L2018F 0.13 probably_damaging(0.999) TCGA-77-7338-01 6 152734664 152734664 A T SYNE1 Nonsense_Mutation p.L2018* 0.12 TCGA-77-7338-01 6 152763349 152763349 C G SYNE1 Missense_Mutation p.R1290T 0.06 benign(0.002) TCGA-77-7338-01 6 161127465 161127465 G A PLG Missense_Mutation p.V26M 0.25 deleterious(0.02) benign(0.213) TCGA-77-7338-01 6 170068087 170068087 T G WDR27 Missense_Mutation p.R217S 0.36 deleterious(0) probably_damaging(0.971) TCGA-77-7338-01 6 31911529 31911529 G C CFB Missense_Mutation p.G406A 0.17 tolerated(0.2) benign(0.138) TCGA-77-7338-01 6 39602624 39602624 C G KIF6 Splice_Site p.X170_splice 0.16 TCGA-77-7338-01 6 55360407 55360407 T C HMGCLL1 Splice_Site p.X233_splice 0.23 TCGA-77-7338-01 6 56471315 56471315 T C DST Intron 0.17 TCGA-77-7338-01 6 62390850 62390850 C T KHDRBS2 3'UTR 0.15 TCGA-77-7338-01 6 69759194 69759194 C T BAI3 Silent p.G763G 0.24 TCGA-77-7338-01 6 75884916 75884916 G C COL12A1 Missense_Mutation p.P850A 0.24 benign(0.006) TCGA-77-7338-01 6 76731853 76731853 C T IMPG1 Missense_Mutation p.D216N 0.17 tolerated(0.09) benign(0.361) TCGA-77-7338-01 6 99853953 99853953 T G PNISR Missense_Mutation p.E319A 0.28 deleterious(0.03) probably_damaging(0.937) TCGA-77-7338-01 7 130353889 130353889 G T TSGA13 Missense_Mutation p.Q265K 0.21 deleterious(0.05) benign(0.005) TCGA-77-7338-01 7 131866926 131866926 C A PLXNA4 Missense_Mutation p.W1061L 0.18 tolerated(0.11) benign(0.186) TCGA-77-7338-01 7 137150701 137150701 C G DGKI Silent p.A863A 0.22 TCGA-77-7338-01 7 138872202 138872202 G T TTC26 Silent p.L490L 0.25 TCGA-77-7338-01 7 27148089 27148089 C T HOXA3 Silent p.S259S 0.29 TCGA-77-7338-01 7 36895205 36895205 G C ELMO1 Missense_Mutation p.P712R 0.13 deleterious(0) probably_damaging(0.992) TCGA-77-7338-01 7 53104060 53104060 G A POM121L12 Silent p.R232R 0.26 TCGA-77-7338-01 7 6776766 6776766 C G PMS2CL RNA 0.28 TCGA-77-7338-01 7 74212389 74212389 C T GTF2IRD2 Missense_Mutation p.E488K 0.30 tolerated(0.15) probably_damaging(0.994) TCGA-77-7338-01 7 87487980 87487980 G A SLC25A40 Silent p.A21A 0.33 TCGA-77-7338-01 7 87762199 87762199 G T ADAM22 Missense_Mutation p.S337I 0.17 deleterious(0.02) possibly_damaging(0.579) TCGA-77-7338-01 7 94053716 94053716 G A COL1A2 Silent p.S878S 0.07 TCGA-77-7338-01 8 11301687 11301687 C - FAM167A Frame_Shift_Del p.Q79Rfs*7 0.27 TCGA-77-7338-01 8 143961155 143961155 G T CYP11B1 Silent p.G25G 0.37 TCGA-77-7338-01 8 143961156 143961156 C T CYP11B1 Missense_Mutation p.G25D 0.37 deleterious(0) possibly_damaging(0.805) TCGA-77-7338-01 8 144998302 144998302 G A PLEC Missense_Mutation p.A2069V 0.15 unknown(0) TCGA-77-7338-01 8 63985622 63985622 C T TTPA Missense_Mutation p.R77K 0.27 deleterious(0.01) probably_damaging(0.993) TCGA-77-7338-01 9 113637701 113637701 C G LPAR1 Nonstop_Mutation p.*365Yext*4 0.09 TCGA-77-7338-01 9 138830172 138830172 G A UBAC1 Missense_Mutation p.P333L 0.18 tolerated(0.2) possibly_damaging(0.892) TCGA-77-7338-01 9 21974748 21974748 C A CDKN2A Nonsense_Mutation p.E27* 0.38 TCGA-77-7338-01 X 134494823 134494823 A G ZNF449 Missense_Mutation p.E460G 0.59 deleterious(0.01) probably_damaging(0.997) TCGA-77-7338-01 X 135631017 135631017 G A VGLL1 Missense_Mutation p.D162N 0.49 tolerated(0.1) benign(0.059) TCGA-77-7338-01 X 215978 215978 C G PLCXD1 Silent p.L316L 0.33 TCGA-77-7338-01 X 32613882 32613882 G T DMD Missense_Mutation p.Q532K 0.40 benign(0.34) TCGA-77-7463-01 10 101294927 101294927 G C NKX2-3 Missense_Mutation p.A182P 0.67 deleterious(0) benign(0.104) TCGA-77-7463-01 10 104614046 104614046 G A C10orf32 Translation_Start_Site p.M1? 0.55 tolerated_low_confidence(0.08) benign(0.002) TCGA-77-7463-01 10 104620278 104620278 A T C10orf32 Silent p.I76I 0.44 TCGA-77-7463-01 10 117059630 117059630 A G ATRNL1 Silent p.L834L 0.40 TCGA-77-7463-01 10 118225670 118225670 C G PNLIPRP3 Missense_Mutation p.S306C 0.56 tolerated(0.05) benign(0.263) TCGA-77-7463-01 10 135440205 135440205 G A FRG2B Silent p.S14S 0.18 TCGA-77-7463-01 10 25887540 25887540 C T GPR158 Silent p.T995T 0.49 TCGA-77-7463-01 10 27702453 27702453 G T PTCHD3 Silent p.R243R 0.15 TCGA-77-7463-01 10 29769668 29769668 G A SVIL Silent p.T1725T 0.29 TCGA-77-7463-01 10 35814899 35814899 C G CCNY Missense_Mutation p.L125V 0.26 deleterious(0) probably_damaging(0.994) TCGA-77-7463-01 10 38658928 38658928 A T HSD17B7P2 RNA 0.22 TCGA-77-7463-01 10 46242074 46242074 C A FAM21C Missense_Mutation p.H237Q 0.41 tolerated(0.38) benign(0.002) TCGA-77-7463-01 10 52595929 52595929 G C A1CF Missense_Mutation p.P178R 0.52 deleterious(0) probably_damaging(1) TCGA-77-7463-01 10 55616963 55616963 C A PCDH15 Missense_Mutation p.V1260L 0.48 tolerated(0.11) possibly_damaging(0.829) TCGA-77-7463-01 10 70246958 70246958 T A SLC25A16 Missense_Mutation p.D262V 0.49 deleterious(0) probably_damaging(0.993) TCGA-77-7463-01 10 7218037 7218037 T A SFMBT2 Silent p.L633L 0.47 TCGA-77-7463-01 10 7759734 7759734 C A ITIH2 Missense_Mutation p.L205M 0.21 deleterious(0) probably_damaging(0.993) TCGA-77-7463-01 10 89720721 89720721 A - PTEN Frame_Shift_Del p.N292Mfs*15 0.33 TCGA-77-7463-01 10 93342 93342 C - TUBB8 Frame_Shift_Del p.M330Ifs*20 0.28 TCGA-77-7463-01 10 94100489 94100489 G T MARCH5 Missense_Mutation p.A100S 0.51 deleterious(0.03) benign(0.002) TCGA-77-7463-01 10 96480266 96480266 G C CYP2C18 Silent p.L311L 0.69 TCGA-77-7463-01 11 100999500 100999500 G C PGR Missense_Mutation p.S101C 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.67) TCGA-77-7463-01 11 102738033 102738033 G T MMP12 RNA 0.22 TCGA-77-7463-01 11 113815388 113815388 G T HTR3B Missense_Mutation p.G334V 0.27 tolerated(0.34) benign(0.094) TCGA-77-7463-01 11 113860439 113860439 A T HTR3A Missense_Mutation p.Y502F 0.24 deleterious(0) probably_damaging(0.999) TCGA-77-7463-01 11 116652910 116652910 C T ZNF259 Silent p.T381T 0.15 TCGA-77-7463-01 11 116692347 116692347 G T APOA4 Missense_Mutation p.R143S 0.16 deleterious(0.03) benign(0.396) TCGA-77-7463-01 11 118765390 118765390 T C BCL9L 3'UTR 0.26 TCGA-77-7463-01 11 123909539 123909539 A G OR10G7 Missense_Mutation p.M57T 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-77-7463-01 11 125255609 125255609 G T PKNOX2 Silent p.L130L 0.40 TCGA-77-7463-01 11 129734582 129734582 C G NFRKB 3'UTR 0.12 TCGA-77-7463-01 11 130779945 130779945 T C SNX19 Missense_Mutation p.K668E 0.39 deleterious(0) probably_damaging(0.99) TCGA-77-7463-01 11 1642851 1642851 G T KRTAP5-4 Missense_Mutation p.S158Y 0.35 deleterious_low_confidence(0.01) unknown(0) TCGA-77-7463-01 11 17483325 17483325 G A ABCC8 Silent p.D209D 0.17 TCGA-77-7463-01 11 18159178 18159178 T G MRGPRX3 Missense_Mutation p.C143W 0.22 deleterious(0) probably_damaging(1) TCGA-77-7463-01 11 18291305 18291305 C T SAA1 Missense_Mutation p.A91V 0.08 tolerated(0.51) benign(0.014) TCGA-77-7463-01 11 25100123 25100123 T G LUZP2 Silent p.S320S 0.31 TCGA-77-7463-01 11 26587369 26587369 A G MUC15 Silent p.L40L 0.22 TCGA-77-7463-01 11 26702650 26702650 C A SLC5A12 Missense_Mutation p.C476F 0.24 deleterious(0) probably_damaging(0.999) TCGA-77-7463-01 11 34938119 34938119 G C PDHX 5'UTR 0.21 TCGA-77-7463-01 11 47345816 47345816 T G MADD Missense_Mutation p.C1515G 0.19 deleterious(0) possibly_damaging(0.51) TCGA-77-7463-01 11 4842876 4842876 G C OR51F2 Missense_Mutation p.L87F 0.37 deleterious(0) probably_damaging(0.999) TCGA-77-7463-01 11 5275568 5275568 C A HBG2 Missense_Mutation p.S90I 0.18 deleterious(0.01) probably_damaging(0.942) TCGA-77-7463-01 11 55371434 55371434 C A OR4C11 Missense_Mutation p.C139F 0.43 deleterious(0) probably_damaging(1) TCGA-77-7463-01 11 55406716 55406716 G A OR4P4 Missense_Mutation p.A295T 0.35 tolerated(0.1) benign(0.081) TCGA-77-7463-01 11 55653610 55653610 A - TRIM51 Frame_Shift_Del p.M144Cfs*15 0.44 TCGA-77-7463-01 11 55872546 55872546 G C OR8H2 Missense_Mutation p.V10L 0.23 tolerated(0.09) benign(0.049) TCGA-77-7463-01 11 55927463 55927463 C T OR8K5 Missense_Mutation p.E111K 0.23 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-77-7463-01 11 56310257 56310257 G T OR5M11 Silent p.A159A 0.27 TCGA-77-7463-01 11 58920626 58920626 G C FAM111A Missense_Mutation p.K495N 0.09 tolerated(0.05) benign(0.422) TCGA-77-7463-01 11 59480896 59480896 C A OR10V1 Missense_Mutation p.L141F 0.24 deleterious(0.02) benign(0.119) TCGA-77-7463-01 11 61533677 61533677 G T MYRF Missense_Mutation p.A128S 0.41 deleterious(0.04) probably_damaging(0.984) TCGA-77-7463-01 11 62299205 62299205 G - AHNAK Frame_Shift_Del p.P895Qfs*5 0.25 TCGA-77-7463-01 11 64001627 64001627 G A DNAJC4 Missense_Mutation p.E233K 0.25 tolerated_low_confidence(0.26) benign(0.007) TCGA-77-7463-01 11 64084286 64084286 C T TRMT112 3'UTR 0.26 TCGA-77-7463-01 11 64084341 64084341 C T TRMT112 Missense_Mutation p.E124K 0.25 tolerated_low_confidence(0.11) benign(0.01) TCGA-77-7463-01 11 64084582 64084582 C G TRMT112 Missense_Mutation p.G73A 0.21 tolerated(0.55) benign(0.026) TCGA-77-7463-01 11 6636793 6636793 G A TPP1 Silent p.S382S 0.40 TCGA-77-7463-01 11 66469054 66469054 C A SPTBN2 Splice_Site p.X939_splice 0.39 TCGA-77-7463-01 11 67177078 67177078 C T TBC1D10C Silent p.P398P 0.31 TCGA-77-7463-01 11 69625298 69625298 C T FGF3 Silent p.R165R 0.45 TCGA-77-7463-01 11 73021759 73021759 G T ARHGEF17 Missense_Mutation p.W692C 0.34 tolerated_low_confidence(0.08) benign(0.41) TCGA-77-7463-01 11 75277906 75277906 A T SERPINH1 Missense_Mutation p.Q171L 0.28 tolerated(0.06) benign(0.173) TCGA-77-7463-01 11 76903237 76903237 A T MYO7A Missense_Mutation p.S1356C 0.37 deleterious(0.01) benign(0.005) TCGA-77-7463-01 11 7981462 7981462 G T NLRP10 Missense_Mutation p.S566Y 0.45 deleterious(0.02) benign(0.405) TCGA-77-7463-01 11 92495088 92495088 G T FAT3 Missense_Mutation p.D1246Y 0.29 probably_damaging(1) TCGA-77-7463-01 11 93826706 93826706 T G HEPHL1 Missense_Mutation p.I778M 0.09 deleterious(0) probably_damaging(0.985) TCGA-77-7463-01 12 10218356 10218356 C G CLEC9A 3'UTR 0.35 TCGA-77-7463-01 12 108600086 108600086 C A WSCD2 Missense_Mutation p.L135M 0.29 tolerated(0.14) benign(0.17) TCGA-77-7463-01 12 109530427 109530427 A - ALKBH2 Frame_Shift_Del p.S56Afs*34 0.20 TCGA-77-7463-01 12 110893434 110893434 C G GPN3 Missense_Mutation p.R246T 0.40 tolerated(0.59) benign(0.015) TCGA-77-7463-01 12 111746116 111746116 C T CUX2 Silent p.S379S 0.38 TCGA-77-7463-01 12 11286189 11286189 G A TAS2R30 Missense_Mutation p.P219S 0.27 tolerated(0.22) benign(0.079) TCGA-77-7463-01 12 11420584 11420584 C T PRB3 Missense_Mutation p.R200H 0.13 tolerated(0.1) unknown(0) TCGA-77-7463-01 12 120204912 120204912 C G CIT Missense_Mutation p.Q761H 0.37 tolerated(0.1) benign(0.396) TCGA-77-7463-01 12 129558872 129558872 C A TMEM132D Missense_Mutation p.V950F 0.09 tolerated(0.33) benign(0.138) TCGA-77-7463-01 12 131488835 131488835 A G GPR133 Missense_Mutation p.R417G 0.18 tolerated(0.57) benign(0) TCGA-77-7463-01 12 18658352 18658352 G - PIK3C2G Frame_Shift_Del p.G1053Efs*4 0.21 TCGA-77-7463-01 12 29920881 29920881 C A TMTC1 Missense_Mutation p.A144S 0.50 tolerated(0.15) benign(0.21) TCGA-77-7463-01 12 49176608 49176608 G A ADCY6 Missense_Mutation p.R204C 0.15 deleterious(0.01) benign(0.386) TCGA-77-7463-01 12 49580514 49580514 T C TUBA1A Missense_Mutation p.M36V 0.35 tolerated_low_confidence(0.07) benign(0.007) TCGA-77-7463-01 12 50197715 50197715 C T NCKAP5L Missense_Mutation p.R38Q 0.49 tolerated(0.05) benign(0.025) TCGA-77-7463-01 12 53072408 53072408 C T KRT1 Missense_Mutation p.V242M 0.55 deleterious(0.02) benign(0.42) TCGA-77-7463-01 12 54369188 54369188 T G HOXC11 Silent p.P302P 0.46 TCGA-77-7463-01 12 57858612 57858612 C T GLI1 Missense_Mutation p.P117L 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-77-7463-01 12 57984956 57984956 C T PIP4K2C 5'Flank 0.60 TCGA-77-7463-01 12 6765914 6765914 C - ING4 Frame_Shift_Del p.D30Tfs*2 0.19 TCGA-77-7463-01 12 68716993 68716993 G A MDM1 Missense_Mutation p.P221S 0.11 tolerated(0.1) benign(0.069) TCGA-77-7463-01 12 71286654 71286654 C A PTPRR Silent p.L54L 0.29 TCGA-77-7463-01 12 72070695 72070695 G A THAP2 Missense_Mutation p.R165K 0.09 tolerated(0.28) possibly_damaging(0.899) TCGA-77-7463-01 12 75816832 75816832 T A GLIPR1L2 Intron 0.50 TCGA-77-7463-01 12 7653737 7653737 G T CD163 Nonsense_Mutation p.S152* 0.36 TCGA-77-7463-01 12 78513445 78513445 T C NAV3 Missense_Mutation p.S1157P 0.35 tolerated(0.49) possibly_damaging(0.907) TCGA-77-7463-01 12 7900030 7900030 G A CLEC4C 5'UTR 0.33 TCGA-77-7463-01 12 7900031 7900031 G A CLEC4C 5'UTR 0.33 TCGA-77-7463-01 12 80190583 80190583 T A PPP1R12A Missense_Mutation p.I814L 0.09 tolerated(0.74) benign(0) TCGA-77-7463-01 12 96421257 96421257 C A LTA4H Missense_Mutation p.G126W 0.40 deleterious(0) probably_damaging(1) TCGA-77-7463-01 13 110864255 110864255 C A COL4A1 Silent p.P134P 0.38 TCGA-77-7463-01 13 113333689 113333689 T A C13orf35 5'UTR 0.48 TCGA-77-7463-01 13 20279921 20279921 C A PSPC1 Missense_Mutation p.G423C 0.23 deleterious(0) probably_damaging(0.999) TCGA-77-7463-01 13 20568015 20568015 G T ZMYM2 Missense_Mutation p.G268V 0.49 deleterious(0) probably_damaging(1) TCGA-77-7463-01 13 25840350 25840350 G C MTMR6 Missense_Mutation p.L127V 0.42 tolerated(0.12) benign(0.002) TCGA-77-7463-01 13 46358064 46358064 G T SIAH3 Missense_Mutation p.H88Q 0.30 tolerated(0.24) benign(0.006) TCGA-77-7463-01 13 52026729 52026729 G A INTS6 5'UTR 0.50 TCGA-77-7463-01 14 101438501 101438501 A T SNORD114-14 RNA 0.32 TCGA-77-7463-01 14 102549550 102549550 C T HSP90AA1 Missense_Mutation p.D648N 0.20 deleterious_low_confidence(0) unknown(0) TCGA-77-7463-01 14 105416426 105416426 T A AHNAK2 Missense_Mutation p.S1788C 0.27 benign(0.276) TCGA-77-7463-01 14 106173665 106173665 G T IGHA1 Missense_Mutation p.A301E 0.30 tolerated(1) benign(0.009) TCGA-77-7463-01 14 106320670 106320670 G T IGHM Missense_Mutation p.S380R 0.15 deleterious(0) probably_damaging(0.976) TCGA-77-7463-01 14 106967451 106967451 C A IGHV1-46 Missense_Mutation p.A12S 0.48 tolerated(0.23) benign(0.361) TCGA-77-7463-01 14 23512325 23512325 T A PSMB11 Silent p.T297T 0.26 TCGA-77-7463-01 14 23817397 23817397 C A SLC22A17 Missense_Mutation p.G271W 0.35 deleterious(0.02) probably_damaging(0.998) TCGA-77-7463-01 14 24769362 24769362 G C NOP9 Missense_Mutation p.A68P 0.27 deleterious(0.02) probably_damaging(0.977) TCGA-77-7463-01 14 28734012 28734012 C A BNIP3P1 RNA 0.27 TCGA-77-7463-01 14 31376111 31376111 T A STRN3 Silent p.P620P 0.30 TCGA-77-7463-01 14 33147666 33147666 G T AKAP6 Splice_Site p.X960_splice 0.29 TCGA-77-7463-01 14 50065919 50065919 G A LRR1 Missense_Mutation p.E61K 0.82 tolerated(1) benign(0.001) TCGA-77-7463-01 14 53245046 53245046 G A GNPNAT1 Missense_Mutation p.R180W 0.46 tolerated(0.18) benign(0.114) TCGA-77-7463-01 14 71201217 71201217 T A MAP3K9 Splice_Site p.X638_splice 0.27 TCGA-77-7463-01 14 73437747 73437747 T G ZFYVE1 Missense_Mutation p.K726T 0.25 tolerated(0.15) benign(0.102) TCGA-77-7463-01 14 74083742 74083742 G T ACOT6 5'UTR 0.32 TCGA-77-7463-01 14 77302646 77302646 C A C14orf166B Missense_Mutation p.L163I 0.12 tolerated(0.91) benign(0.104) TCGA-77-7463-01 14 80327952 80327952 C T NRXN3 Intron 0.48 TCGA-77-7463-01 14 90650700 90650700 G C KCNK13 Missense_Mutation p.V194L 0.32 tolerated(0.05) probably_damaging(0.931) TCGA-77-7463-01 14 92473989 92473989 T A TRIP11 Missense_Mutation p.T508S 0.48 deleterious(0.01) probably_damaging(0.982) TCGA-77-7463-01 14 94935802 94935802 T C SERPINA9 Missense_Mutation p.K144E 0.42 tolerated(0.16) benign(0) TCGA-77-7463-01 14 95090325 95090325 G T SERPINA3 3'UTR 0.38 TCGA-77-7463-01 15 25304759 25304759 G T SNORD116-3 3'Flank 0.29 TCGA-77-7463-01 15 27128624 27128624 G A GABRA5 Silent p.K139K 0.34 TCGA-77-7463-01 15 28447352 28447352 T C HERC2 Missense_Mutation p.I2508M 0.28 benign(0.054) TCGA-77-7463-01 15 28629318 28629318 G T GOLGA8F Missense_Mutation p.R218L 0.34 tolerated(0.42) benign(0.001) TCGA-77-7463-01 15 33895405 33895405 G T RYR3 Missense_Mutation p.Q668H 0.41 benign(0.166) TCGA-77-7463-01 15 38643619 38643619 A G SPRED1 Missense_Mutation p.I363M 0.29 deleterious(0) probably_damaging(0.994) TCGA-77-7463-01 15 40627396 40627396 C T C15orf52 Missense_Mutation p.R523H 0.05 deleterious_low_confidence(0) unknown(0) TCGA-77-7463-01 15 43045302 43045302 C G TTBK2 Missense_Mutation p.L714F 0.26 deleterious_low_confidence(0.02) benign(0.372) TCGA-77-7463-01 15 56388283 56388283 T C RFX7 Missense_Mutation p.H548R 0.19 tolerated_low_confidence(0.13) benign(0.001) TCGA-77-7463-01 15 64163193 64163193 C A MIR422A RNA 0.41 TCGA-77-7463-01 15 74623615 74623615 G T CCDC33 Missense_Mutation p.R583S 0.28 deleterious(0.03) probably_damaging(0.943) TCGA-77-7463-01 15 75970057 75970057 G C CSPG4 Silent p.L1707L 0.44 TCGA-77-7463-01 15 77324751 77324751 C A PSTPIP1 Intron 0.21 TCGA-77-7463-01 15 79058399 79058399 G T ADAMTS7 Missense_Mutation p.P1285H 0.30 deleterious(0) possibly_damaging(0.789) TCGA-77-7463-01 15 84566712 84566712 A G ADAMTSL3 Missense_Mutation p.I524V 0.44 tolerated(0.07) probably_damaging(0.999) TCGA-77-7463-01 15 99251068 99251068 T C IGF1R Silent p.N124N 0.28 TCGA-77-7463-01 16 11001324 11001324 G C CIITA Missense_Mutation p.E659Q 0.62 tolerated(0.34) benign(0.011) TCGA-77-7463-01 16 21416202 21416202 G A NPIPB3 Missense_Mutation p.P169L 0.20 probably_damaging(0.994) TCGA-77-7463-01 16 22151515 22151515 T A VWA3A Missense_Mutation p.L778Q 0.45 tolerated(0.24) benign(0.024) TCGA-77-7463-01 16 87724026 87724026 A T JPH3 Missense_Mutation p.E687V 0.55 deleterious(0) benign(0.33) TCGA-77-7463-01 17 26959957 26959957 C G KIAA0100 Intron 0.56 TCGA-77-7463-01 17 28384727 28384727 G A EFCAB5 Missense_Mutation p.C800Y 0.58 tolerated(1) benign(0) TCGA-77-7463-01 17 33806635 33806635 C A SLFN12L Missense_Mutation p.L198F 0.67 tolerated(0.25) benign(0.118) TCGA-77-7463-01 17 37094981 37094981 C A FBXO47 Missense_Mutation p.C363F 0.61 deleterious(0) possibly_damaging(0.885) TCGA-77-7463-01 17 40997666 40997666 G T AOC2 Silent p.L341L 0.62 TCGA-77-7463-01 17 42828200 42828200 A C DBF4B Missense_Mutation p.H476P 0.64 tolerated_low_confidence(0.19) benign(0.01) TCGA-77-7463-01 17 5984191 5984191 C A WSCD1 Silent p.A71A 0.71 TCGA-77-7463-01 17 72927115 72927115 C T OTOP2 Missense_Mutation p.P462L 0.63 tolerated(0.15) benign(0.028) TCGA-77-7463-01 17 7578370 7578370 C A TP53 Splice_Site p.X187_splice 0.60 TCGA-77-7463-01 17 7989339 7989339 G A ALOX12B Missense_Mutation p.A116V 0.17 deleterious(0) benign(0.11) TCGA-77-7463-01 18 13117641 13117641 A C CEP192 Silent p.R2492R 0.36 TCGA-77-7463-01 18 23724589 23724589 G T PSMA8 Missense_Mutation p.D57Y 0.30 deleterious(0) probably_damaging(0.978) TCGA-77-7463-01 18 28971089 28971089 G A DSG4 Missense_Mutation p.A245T 0.20 deleterious(0.03) probably_damaging(0.992) TCGA-77-7463-01 18 2940670 2940670 C G LPIN2 Missense_Mutation p.E211Q 0.13 tolerated(0.39) possibly_damaging(0.544) TCGA-77-7463-01 18 32438341 32438341 T A DTNA Missense_Mutation p.L455Q 0.12 deleterious(0) probably_damaging(0.994) TCGA-77-7463-01 18 54398715 54398715 G T WDR7 Missense_Mutation p.V626F 0.21 deleterious(0) benign(0.398) TCGA-77-7463-01 18 56246699 56246699 G T ALPK2 Missense_Mutation p.Q437K 0.37 deleterious(0.04) possibly_damaging(0.491) TCGA-77-7463-01 18 56246700 56246700 G T ALPK2 Missense_Mutation p.H436Q 0.37 tolerated(0.14) benign(0.053) TCGA-77-7463-01 18 59221919 59221919 G T CDH20 Silent p.P799P 0.23 TCGA-77-7463-01 18 59483264 59483264 C A RNF152 Missense_Mutation p.G145W 0.16 deleterious(0.02) benign(0.219) TCGA-77-7463-01 18 60036112 60036112 G A TNFRSF11A Missense_Mutation p.G321D 0.41 deleterious(0.04) benign(0.059) TCGA-77-7463-01 18 67718653 67718653 C A RTTN Missense_Mutation p.A1773S 0.20 deleterious(0.01) benign(0.032) TCGA-77-7463-01 18 67718654 67718654 C A RTTN Silent p.A1772A 0.20 TCGA-77-7463-01 18 74154274 74154274 C A ZNF516 Missense_Mutation p.G246V 0.30 deleterious(0) probably_damaging(1) TCGA-77-7463-01 19 12874563 12874563 C A HOOK2 Silent p.R619R 0.38 TCGA-77-7463-01 19 15349957 15349957 C A BRD4 Missense_Mutation p.R1232L 0.48 benign(0.25) TCGA-77-7463-01 19 19105091 19105091 C T SUGP2 3'UTR 0.16 TCGA-77-7463-01 19 39913556 39913556 C G PLEKHG2 Missense_Mutation p.S621C 0.53 deleterious_low_confidence(0) possibly_damaging(0.907) TCGA-77-7463-01 19 40398435 40398435 C A FCGBP Missense_Mutation p.V2178L 0.26 benign(0.299) TCGA-77-7463-01 19 41601723 41601723 C A CYP2A13 Silent p.T454T 0.53 TCGA-77-7463-01 19 48244247 48244247 T C EHD2 Missense_Mutation p.L397P 0.48 deleterious(0) probably_damaging(0.927) TCGA-77-7463-01 19 48244248 48244248 G T EHD2 Silent p.L397L 0.47 TCGA-77-7463-01 19 49254406 49254406 G A FUT1 Missense_Mutation p.R45C 0.11 tolerated_low_confidence(0.18) benign(0.011) TCGA-77-7463-01 19 49971658 49971658 T A ALDH16A1 Silent p.P653P 0.09 TCGA-77-7463-01 19 51217199 51217199 G T SHANK1 Silent p.P216P 0.47 TCGA-77-7463-01 19 51217200 51217200 G T SHANK1 Missense_Mutation p.P216H 0.47 probably_damaging(0.997) TCGA-77-7463-01 19 51329158 51329158 A C KLK15 Missense_Mutation p.I222S 0.55 deleterious(0) probably_damaging(0.996) TCGA-77-7463-01 19 52132656 52132656 C A SIGLEC5 Nonsense_Mutation p.G219* 0.44 TCGA-77-7463-01 19 54327530 54327530 G T NLRP12 5'UTR 0.75 TCGA-77-7463-01 19 57325530 57325530 C T PEG3 Missense_Mutation p.G1427E 0.63 tolerated(0.14) possibly_damaging(0.614) TCGA-77-7463-01 19 57326234 57326234 G A PEG3 Silent p.S1192S 0.47 TCGA-77-7463-01 19 57705242 57705242 G T ZNF264 Splice_Site p.X12_splice 0.45 TCGA-77-7463-01 19 57838079 57838079 C T ZNF543 Missense_Mutation p.S75F 0.64 tolerated(0.2) benign(0.029) TCGA-77-7463-01 19 623499 623499 C A POLRMT Silent p.V415V 0.62 TCGA-77-7463-01 19 7796188 7796188 C T CLEC4G Missense_Mutation p.A62T 0.75 tolerated(0.33) benign(0.009) TCGA-77-7463-01 19 8140049 8140049 G A FBN3 Silent p.H2536H 0.45 TCGA-77-7463-01 19 8997177 8997177 G T MUC16 Silent p.S13673S 0.50 TCGA-77-7463-01 19 8999493 8999493 C A MUC16 Missense_Mutation p.G13561V 0.36 probably_damaging(0.938) TCGA-77-7463-01 1 111861207 111861207 C A CHIA Missense_Mutation p.S274R 0.50 tolerated(0.08) benign(0.027) TCGA-77-7463-01 1 117656050 117656050 G C TRIM45 Missense_Mutation p.H509D 0.50 deleterious(0) possibly_damaging(0.847) TCGA-77-7463-01 1 12815712 12815712 A G C1orf158 Silent p.P58P 0.60 TCGA-77-7463-01 1 12819393 12819393 C T C1orf158 Missense_Mutation p.P126S 0.59 deleterious(0.01) probably_damaging(1) TCGA-77-7463-01 1 12939621 12939621 A T PRAMEF4 Missense_Mutation p.M394K 0.63 deleterious(0) benign(0.156) TCGA-77-7463-01 1 14105510 14105510 G T PRDM2 Missense_Mutation p.R407L 0.75 probably_damaging(1) TCGA-77-7463-01 1 144879147 144879147 T C PDE4DIP Missense_Mutation p.K1435E 0.12 deleterious(0.04) benign(0.138) TCGA-77-7463-01 1 145368581 145368581 A G NBPF10 Missense_Mutation p.E3520G 0.12 benign(0.046) TCGA-77-7463-01 1 152009504 152009504 C G S100A11 5'UTR 0.31 TCGA-77-7463-01 1 158325729 158325729 G T CD1E Silent p.R246R 0.30 TCGA-77-7463-01 1 158326296 158326296 T C CD1E Missense_Mutation p.S305P 0.32 tolerated(0.24) probably_damaging(0.957) TCGA-77-7463-01 1 158583604 158583604 C A SPTA1 Missense_Mutation p.C2299F 0.34 deleterious(0) probably_damaging(0.999) TCGA-77-7463-01 1 161166602 161166602 G T ADAMTS4 Missense_Mutation p.H234Q 0.24 deleterious(0.01) possibly_damaging(0.631) TCGA-77-7463-01 1 165380239 165380239 G C RXRG Missense_Mutation p.L244V 0.18 tolerated(0.06) benign(0.001) TCGA-77-7463-01 1 175105001 175105001 T C TNN Silent p.T1117T 0.25 TCGA-77-7463-01 1 176983979 176983979 C A ASTN1 Missense_Mutation p.D491Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-77-7463-01 1 179544784 179544784 G T NPHS2 Silent p.G72G 0.38 TCGA-77-7463-01 1 179632614 179632614 C A TDRD5 Missense_Mutation p.N879K 0.26 deleterious(0.05) benign(0.043) TCGA-77-7463-01 1 182921864 182921864 C G SHCBP1L Missense_Mutation p.K135N 0.39 deleterious(0) possibly_damaging(0.705) TCGA-77-7463-01 1 183205648 183205648 C G LAMC2 Missense_Mutation p.A837G 0.21 deleterious(0) benign(0.004) TCGA-77-7463-01 1 183205649 183205649 G T LAMC2 Silent p.A837A 0.20 TCGA-77-7463-01 1 186289533 186289533 C T TPR Missense_Mutation p.G2160D 0.36 probably_damaging(0.958) TCGA-77-7463-01 1 196799749 196799749 C A CFHR1 Missense_Mutation p.L243I 0.25 deleterious(0) probably_damaging(0.994) TCGA-77-7463-01 1 197026305 197026305 C - F13B Frame_Shift_Del p.E337Rfs*24 0.27 TCGA-77-7463-01 1 197390919 197390919 C A CRB1 Missense_Mutation p.T654N 0.36 deleterious(0.01) benign(0.071) TCGA-77-7463-01 1 197390920 197390920 C A CRB1 Silent p.T654T 0.36 TCGA-77-7463-01 1 203678515 203678515 G C ATP2B4 Missense_Mutation p.Q548H 0.08 tolerated(0.15) benign(0.012) TCGA-77-7463-01 1 204214768 204214768 C A PLEKHA6 Silent p.R669R 0.32 TCGA-77-7463-01 1 207640180 207640180 C T CR2 Missense_Mutation p.S123F 0.32 deleterious(0.04) possibly_damaging(0.463) TCGA-77-7463-01 1 207963648 207963648 G C CD46 Intron 0.10 TCGA-77-7463-01 1 211093035 211093035 G T KCNH1 Missense_Mutation p.A470D 0.38 deleterious(0) probably_damaging(0.949) TCGA-77-7463-01 1 216221909 216221909 A T USH2A Missense_Mutation p.S2044T 0.36 benign(0.159) TCGA-77-7463-01 1 220091740 220091740 G T SLC30A10 Missense_Mutation p.P272Q 0.37 tolerated(0.07) benign(0.38) TCGA-77-7463-01 1 220928358 220928358 C T MARC2 Silent p.I114I 0.29 TCGA-77-7463-01 1 223396820 223396820 G T SUSD4 Silent p.P405P 0.29 TCGA-77-7463-01 1 223971913 223971913 G A TP53BP2 Silent p.C1089C 0.31 TCGA-77-7463-01 1 227842955 227842955 A G ZNF678 Missense_Mutation p.H335R 0.30 tolerated(0.38) benign(0.336) TCGA-77-7463-01 1 240371115 240371115 C A FMN2 Silent p.P1001P 0.41 TCGA-77-7463-01 1 240371509 240371509 C T FMN2 Missense_Mutation p.P1133S 0.40 unknown(0) TCGA-77-7463-01 1 247587859 247587859 G T NLRP3 Missense_Mutation p.G372C 0.45 deleterious(0) probably_damaging(1) TCGA-77-7463-01 1 247979002 247979002 A G OR14A16 Silent p.F10F 0.31 TCGA-77-7463-01 1 248263161 248263161 G T OR2L13 Missense_Mutation p.A162S 0.49 deleterious(0.02) benign(0.278) TCGA-77-7463-01 1 248308972 248308972 G T OR2M5 Missense_Mutation p.A175S 0.04 tolerated(0.18) benign(0.034) TCGA-77-7463-01 1 248487348 248487348 C A OR2M7 Missense_Mutation p.A175S 0.43 tolerated(0.16) benign(0.023) TCGA-77-7463-01 1 248569606 248569606 G C OR2T1 Missense_Mutation p.R104P 0.44 deleterious(0.01) benign(0.334) TCGA-77-7463-01 1 249211045 249211045 G T PGBD2 Nonsense_Mutation p.E88* 0.48 TCGA-77-7463-01 1 32508272 32508272 G C KHDRBS1 3'UTR 0.40 TCGA-77-7463-01 1 33985267 33985267 T C CSMD2 Missense_Mutation p.K3439E 0.58 deleterious(0) possibly_damaging(0.844) TCGA-77-7463-01 1 46105899 46105899 C A GPBP1L1 Missense_Mutation p.V243L 0.69 deleterious(0.04) benign(0.024) TCGA-77-7463-01 1 66064482 66064482 C A LEPR Missense_Mutation p.T330K 0.48 tolerated(0.1) possibly_damaging(0.477) TCGA-77-7463-01 1 66833405 66833405 G T PDE4B Missense_Mutation p.D471Y 0.33 deleterious(0) probably_damaging(1) TCGA-77-7463-01 1 74701831 74701831 A T FPGT-TNNI3K Missense_Mutation p.E143V 0.41 deleterious_low_confidence(0) benign(0.086) TCGA-77-7463-01 1 75037296 75037296 G T C1orf173 Silent p.A1366A 0.38 TCGA-77-7463-01 1 75683566 75683566 C A SLC44A5 Missense_Mutation p.D537Y 0.43 deleterious(0) probably_damaging(0.969) TCGA-77-7463-01 20 3065201 3065201 C A AVP Missense_Mutation p.Q40H 0.40 deleterious(0) possibly_damaging(0.897) TCGA-77-7463-01 20 33104235 33104235 G A DYNLRB1 5'UTR 0.59 TCGA-77-7463-01 20 34054828 34054828 T A CEP250 Missense_Mutation p.L177H 0.56 probably_damaging(1) TCGA-77-7463-01 20 3673735 3673735 A G SIGLEC1 Silent p.H1184H 0.14 TCGA-77-7463-01 20 4764835 4764835 C A RASSF2 3'UTR 0.14 TCGA-77-7463-01 20 56099055 56099055 C A CTCFL Silent p.L69L 0.57 TCGA-77-7463-01 20 61485436 61485436 T A TCFL5 Missense_Mutation p.T438S 0.67 deleterious(0.04) probably_damaging(0.996) TCGA-77-7463-01 20 62126438 62126438 A G EEF1A2 Missense_Mutation p.L114P 0.56 deleterious_low_confidence(0) probably_damaging(1) TCGA-77-7463-01 21 10862643 10862643 C A IGHV1OR21-1 Missense_Mutation p.L8M 0.14 deleterious(0) probably_damaging(0.956) TCGA-77-7463-01 21 15872970 15872970 G A SAMSN1 Silent p.F284F 0.15 TCGA-77-7463-01 21 38520942 38520942 G T TTC3 Missense_Mutation p.D705Y 0.20 deleterious(0) probably_damaging(0.992) TCGA-77-7463-01 21 42080510 42080510 G T DSCAM Silent p.P77P 0.28 TCGA-77-7463-01 21 45708313 45708313 G T AIRE Silent p.G208G 0.25 TCGA-77-7463-01 22 24560512 24560512 C A CABIN1 Silent p.R1631R 0.05 TCGA-77-7463-01 22 26173720 26173720 G T MYO18B Missense_Mutation p.M680I 0.51 tolerated(0.58) benign(0.06) TCGA-77-7463-01 22 32495169 32495169 G T SLC5A1 Splice_Site p.X427_splice 0.07 TCGA-77-7463-01 22 35463182 35463182 G T ISX Missense_Mutation p.E34D 0.75 tolerated(0.08) benign(0.126) TCGA-77-7463-01 22 36688155 36688155 G C MYH9 Silent p.A1407A 0.15 TCGA-77-7463-01 22 37334076 37334076 C A CSF2RB Silent p.P742P 0.58 TCGA-77-7463-01 22 46631321 46631321 G A PPARA 3'UTR 0.69 TCGA-77-7463-01 22 46656003 46656003 G T PKDREJ Missense_Mutation p.P1073T 0.15 tolerated(0.38) benign(0.017) TCGA-77-7463-01 2 101188138 101188138 C A PDCL3 Missense_Mutation p.T152K 0.56 deleterious(0.05) possibly_damaging(0.641) TCGA-77-7463-01 2 131486858 131486858 C A GPR148 Missense_Mutation p.P45H 0.07 deleterious(0.01) possibly_damaging(0.894) TCGA-77-7463-01 2 132508389 132508389 G T C2orf27A 5'UTR 0.44 TCGA-77-7463-01 2 138759666 138759666 G A HNMT Missense_Mutation p.V111I 0.10 tolerated(1) benign(0.005) TCGA-77-7463-01 2 139429148 139429148 C T NXPH2 Missense_Mutation p.V47M 0.59 tolerated_low_confidence(0.21) benign(0.084) TCGA-77-7463-01 2 152107514 152107514 A G RBM43 Missense_Mutation p.L327P 0.10 tolerated(0.25) benign(0.218) TCGA-77-7463-01 2 168103627 168103627 A T XIRP2 Nonsense_Mutation p.K1909* 0.62 TCGA-77-7463-01 2 170502378 170502378 T G CCDC173 Silent p.S544S 0.56 TCGA-77-7463-01 2 175311353 175311353 T A GPR155 Missense_Mutation p.I667F 0.51 deleterious(0.01) possibly_damaging(0.544) TCGA-77-7463-01 2 179426989 179426989 C T TTN Missense_Mutation p.R27957K 0.52 TCGA-77-7463-01 2 179444903 179444903 C G TTN Missense_Mutation p.A22371P 0.49 TCGA-77-7463-01 2 179454583 179454583 G T TTN Silent p.V20623V 0.52 TCGA-77-7463-01 2 179597242 179597242 C T TTN Missense_Mutation p.D5516N 0.55 TCGA-77-7463-01 2 191898725 191898725 A T STAT4 Missense_Mutation p.L543I 0.53 tolerated(0.81) benign(0.085) TCGA-77-7463-01 2 196762415 196762415 T A DNAH7 Missense_Mutation p.L1541F 0.43 deleterious(0) probably_damaging(0.998) TCGA-77-7463-01 2 197171327 197171327 C T HECW2 Missense_Mutation p.R900Q 0.57 deleterious(0.01) probably_damaging(0.934) TCGA-77-7463-01 2 197593959 197593959 G A CCDC150 Missense_Mutation p.V867M 0.15 deleterious(0.04) probably_damaging(0.992) TCGA-77-7463-01 2 220379749 220379749 G T ASIC4 Missense_Mutation p.M228I 0.41 tolerated(0.24) benign(0.04) TCGA-77-7463-01 2 220404237 220404237 C A CHPF Silent p.R732R 0.48 TCGA-77-7463-01 2 225367681 225367681 C A CUL3 Splice_Site p.X495_splice 0.44 TCGA-77-7463-01 2 228175613 228175613 C G COL4A3 Nonsense_Mutation p.S1626* 0.09 TCGA-77-7463-01 2 228860240 228860240 C A SPHKAP Missense_Mutation p.S1540I 0.45 deleterious(0) probably_damaging(0.999) TCGA-77-7463-01 2 235949957 235949957 G T SH3BP4 Missense_Mutation p.D182Y 0.47 deleterious(0.01) benign(0.181) TCGA-77-7463-01 2 27375575 27375575 G T TCF23 Missense_Mutation p.R162L 0.49 tolerated(0.11) possibly_damaging(0.806) TCGA-77-7463-01 2 27741677 27741677 C T GCKR Missense_Mutation p.T482I 0.45 deleterious(0.01) probably_damaging(0.997) TCGA-77-7463-01 2 37215855 37215855 G C HEATR5B Missense_Mutation p.L1949V 0.10 tolerated(0.1) benign(0.104) TCGA-77-7463-01 2 43927114 43927114 G T PLEKHH2 Missense_Mutation p.E339D 0.13 tolerated_low_confidence(0.42) benign(0.011) TCGA-77-7463-01 2 47739569 47739569 C T KCNK12 3'Flank 0.50 TCGA-77-7463-01 2 71191964 71191964 G A ATP6V1B1 Silent p.L449L 0.08 TCGA-77-7463-01 2 71650882 71650882 A G ZNF638 Missense_Mutation p.N1413S 0.28 tolerated(0.23) benign(0.009) TCGA-77-7463-01 2 74043377 74043377 A T C2orf78 Missense_Mutation p.D676V 0.09 tolerated(0.15) benign(0.108) TCGA-77-7463-01 2 79348748 79348748 C A REG1A Missense_Mutation p.A42D 0.09 deleterious(0) possibly_damaging(0.51) TCGA-77-7463-01 2 79348749 79348749 C A REG1A Silent p.A42A 0.09 TCGA-77-7463-01 2 79384723 79384723 G T REG3A Missense_Mutation p.H145Q 0.50 deleterious(0.01) possibly_damaging(0.711) TCGA-77-7463-01 2 96072861 96072861 A G FAHD2A Missense_Mutation p.I140V 0.32 deleterious(0.05) benign(0.327) TCGA-77-7463-01 2 97020028 97020028 G A NCAPH Silent p.G370G 0.52 TCGA-77-7463-01 3 100053578 100053578 G C NIT2 5'UTR 0.50 TCGA-77-7463-01 3 11064153 11064153 A G SLC6A1 Missense_Mutation p.K238R 0.50 deleterious(0.02) probably_damaging(1) TCGA-77-7463-01 3 111325633 111325633 C - CD96 Frame_Shift_Del p.P408Lfs*10 0.27 TCGA-77-7463-01 3 113649659 113649659 A G GRAMD1C Missense_Mutation p.T397A 0.08 tolerated(1) possibly_damaging(0.474) TCGA-77-7463-01 3 114035372 114035372 C A MIR568 RNA 0.21 TCGA-77-7463-01 3 129252572 129252572 G T RHO 3'UTR 0.39 TCGA-77-7463-01 3 129252573 129252573 G T RHO 3'UTR 0.38 TCGA-77-7463-01 3 12957219 12957219 C T IQSEC1 Missense_Mutation p.E693K 0.59 tolerated(0.09) possibly_damaging(0.527) TCGA-77-7463-01 3 134369850 134369850 G T KY 5'UTR 0.20 TCGA-77-7463-01 3 135720842 135720842 G A PPP2R3A Missense_Mutation p.D168N 0.16 tolerated_low_confidence(0.23) probably_damaging(0.99) TCGA-77-7463-01 3 137843466 137843467 - C A4GNT Frame_Shift_Ins p.N222Qfs*5 0.13 TCGA-77-7463-01 3 138478176 138478176 T C PIK3CB Missense_Mutation p.S4G 0.18 tolerated_low_confidence(0.16) benign(0.007) TCGA-77-7463-01 3 142031528 142031528 T A XRN1 Missense_Mutation p.K1577M 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.75) TCGA-77-7463-01 3 14489299 14489299 A G SLC6A6 Missense_Mutation p.T192A 0.56 deleterious(0.02) benign(0.257) TCGA-77-7463-01 3 147120514 147120514 C A ZIC4 Splice_Site p.X74_splice 0.17 TCGA-77-7463-01 3 154055530 154055530 A G GPR149 Silent p.N718N 0.24 TCGA-77-7463-01 3 168833449 168833449 G C MECOM Missense_Mutation p.S614R 0.22 deleterious(0) benign(0.197) TCGA-77-7463-01 3 186370108 186370108 C A FETUB Silent p.P279P 0.21 TCGA-77-7463-01 3 186435399 186435399 C G KNG1 Missense_Mutation p.S23C 0.43 tolerated(0.07) benign(0.369) TCGA-77-7463-01 3 194063303 194063303 G T CPN2 Silent p.V43V 0.23 TCGA-77-7463-01 3 26751195 26751195 C A LRRC3B Missense_Mutation p.S11Y 0.48 deleterious(0.01) probably_damaging(0.956) TCGA-77-7463-01 3 46399633 46399633 G C CCR2 Missense_Mutation p.M205I 0.56 deleterious(0.01) benign(0.425) TCGA-77-7463-01 3 64526861 64526861 C T ADAMTS9 Missense_Mutation p.D1811N 0.65 tolerated(0.1) possibly_damaging(0.691) TCGA-77-7463-01 3 97851905 97851905 C G OR5H1 Missense_Mutation p.R122G 0.42 deleterious(0) probably_damaging(0.98) TCGA-77-7463-01 4 100237459 100237459 C A ADH1B Missense_Mutation p.G87V 0.38 deleterious(0.01) probably_damaging(1) TCGA-77-7463-01 4 100479341 100479341 C A TRMT10A Missense_Mutation p.R71S 0.25 deleterious(0) possibly_damaging(0.59) TCGA-77-7463-01 4 106345466 106345467 CC AAA PPA2 Frame_Shift_Ins p.G181Ffs*16 0.14 TCGA-77-7463-01 4 110791746 110791746 A G LRIT3 Missense_Mutation p.E614G 0.26 tolerated(0.26) benign(0.052) TCGA-77-7463-01 4 120982101 120982101 G A MAD2L1 Nonsense_Mutation p.Q125* 0.24 TCGA-77-7463-01 4 123167956 123167956 G A KIAA1109 Missense_Mutation p.R1768H 0.23 probably_damaging(0.935) TCGA-77-7463-01 4 123664139 123664139 A T BBS12 Silent p.T364T 0.41 TCGA-77-7463-01 4 16026843 16026843 A G PROM1 Missense_Mutation p.L201S 0.32 deleterious(0) probably_damaging(0.976) TCGA-77-7463-01 4 16510181 16510181 G T LDB2 Missense_Mutation p.L290M 0.37 tolerated(0.07) benign(0.007) TCGA-77-7463-01 4 173734817 173734817 A G GALNTL6 Missense_Mutation p.Y289C 0.33 deleterious(0) probably_damaging(1) TCGA-77-7463-01 4 189068112 189068112 G T TRIML1 Silent p.L331L 0.47 TCGA-77-7463-01 4 24838893 24838893 C G CCDC149 Missense_Mutation p.E207Q 0.27 deleterious(0.04) probably_damaging(0.997) TCGA-77-7463-01 4 48069687 48069687 C T TXK Silent p.L517L 0.07 TCGA-77-7463-01 4 52861584 52861584 C A LRRC66 Missense_Mutation p.G535V 0.20 tolerated(0.18) benign(0.408) TCGA-77-7463-01 4 5576489 5576489 C T EVC2 Missense_Mutation p.E1095K 0.28 deleterious(0) possibly_damaging(0.632) TCGA-77-7463-01 4 6066724 6066724 C A JAKMIP1 Silent p.V438V 0.11 TCGA-77-7463-01 4 69101734 69101734 C T TMPRSS11B Silent p.E98E 0.15 TCGA-77-7463-01 4 8602951 8602951 G T CPZ Missense_Mutation p.A75S 0.23 tolerated(0.76) benign(0.01) TCGA-77-7463-01 4 89311803 89311803 G C HERC6 Splice_Site p.X146_splice 0.26 TCGA-77-7463-01 4 995709 995709 C T IDUA Intron 0.45 TCGA-77-7463-01 5 131296261 131296261 G T ACSL6 Silent p.A637A 0.27 TCGA-77-7463-01 5 13901580 13901580 T C DNAH5 Silent p.K611K 0.15 TCGA-77-7463-01 5 168135037 168135037 T C SLIT3 Missense_Mutation p.T930A 0.44 deleterious(0.04) benign(0.167) TCGA-77-7463-01 5 175523833 175523833 A T FAM153B Missense_Mutation p.D47V 0.25 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-77-7463-01 5 175919214 175919214 C T FAF2 Missense_Mutation p.R122W 0.37 tolerated(0.07) benign(0.115) TCGA-77-7463-01 5 178410107 178410107 G A GRM6 Missense_Mutation p.S747L 0.15 deleterious(0.02) possibly_damaging(0.876) TCGA-77-7463-01 5 19483657 19483657 G C CDH18 Missense_Mutation p.N545K 0.65 deleterious(0.01) benign(0.433) TCGA-77-7463-01 5 19591281 19591281 G T CDH18 Missense_Mutation p.A295D 0.15 tolerated(0.54) benign(0.016) TCGA-77-7463-01 5 31526316 31526316 C A DROSHA Nonsense_Mutation p.E242* 0.11 TCGA-77-7463-01 5 33588875 33588875 G T ADAMTS12 Nonsense_Mutation p.C898* 0.65 TCGA-77-7463-01 5 34796132 34796132 G A RAI14 Missense_Mutation p.G89R 0.10 deleterious(0.01) probably_damaging(1) TCGA-77-7463-01 5 35876145 35876145 G T IL7R Missense_Mutation p.D313Y 0.16 deleterious(0) possibly_damaging(0.807) TCGA-77-7463-01 5 39002653 39002653 C T RICTOR Missense_Mutation p.D126N 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-77-7463-01 5 5182223 5182223 A C ADAMTS16 Missense_Mutation p.K190Q 0.06 tolerated(0.32) benign(0.023) TCGA-77-7463-01 5 5182244 5182244 G A ADAMTS16 Missense_Mutation p.G197S 0.08 tolerated(0.58) benign(0.006) TCGA-77-7463-01 5 5232517 5232517 G T ADAMTS16 Nonsense_Mutation p.E580* 0.13 TCGA-77-7463-01 5 5319260 5319260 C A ADAMTS16 3'UTR 0.76 TCGA-77-7463-01 5 53814690 53814690 C G SNX18 Missense_Mutation p.T303R 0.30 deleterious(0) probably_damaging(0.965) TCGA-77-7463-01 5 6750547 6750547 G T PAPD7 Silent p.L347L 0.66 TCGA-77-7463-01 5 78264854 78264854 G T ARSB Silent p.T158T 0.40 TCGA-77-7463-01 6 100382331 100382331 T C MCHR2 Missense_Mutation p.Y217C 0.48 deleterious(0) probably_damaging(1) TCGA-77-7463-01 6 101173504 101173504 C A ASCC3 Missense_Mutation p.V605L 0.42 tolerated(0.07) probably_damaging(0.999) TCGA-77-7463-01 6 102247656 102247656 T C GRIK2 Missense_Mutation p.L362P 0.34 deleterious(0.01) possibly_damaging(0.706) TCGA-77-7463-01 6 105406113 105406113 C A LIN28B Missense_Mutation p.N50K 0.41 tolerated(0.1) benign(0.026) TCGA-77-7463-01 6 105406114 105406114 C A LIN28B Silent p.R51R 0.42 TCGA-77-7463-01 6 105606401 105606401 G T POPDC3 Missense_Mutation p.R274S 0.34 tolerated(0.68) benign(0) TCGA-77-7463-01 6 116381330 116381330 C A FRK Missense_Mutation p.A49S 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-77-7463-01 6 117130657 117130657 G T GPRC6A Silent p.V106V 0.46 TCGA-77-7463-01 6 117593636 117593636 T C VGLL2 Silent p.C311C 0.08 TCGA-77-7463-01 6 117593818 117593818 C A VGLL2 3'UTR 0.53 TCGA-77-7463-01 6 123038910 123038910 C G PKIB Intron 0.37 TCGA-77-7463-01 6 144744722 144744722 A G UTRN Missense_Mutation p.N91S 0.08 deleterious(0) probably_damaging(0.993) TCGA-77-7463-01 6 145069628 145069628 A G UTRN Missense_Mutation p.Q2729R 0.40 deleterious(0.01) benign(0.375) TCGA-77-7463-01 6 160663385 160663385 G C SLC22A2 Missense_Mutation p.I443M 0.12 deleterious(0) probably_damaging(0.987) TCGA-77-7463-01 6 169632823 169632823 G T THBS2 Missense_Mutation p.P623Q 0.45 deleterious(0.01) probably_damaging(1) TCGA-77-7463-01 6 24462987 24462987 T C GPLD1 Silent p.A286A 0.40 TCGA-77-7463-01 6 26234735 26234735 C A HIST1H1D Missense_Mutation p.A143S 0.17 tolerated(0.73) unknown(0) TCGA-77-7463-01 6 26509226 26509226 C A BTN1A1 Missense_Mutation p.P469T 0.08 deleterious(0.02) probably_damaging(1) TCGA-77-7463-01 6 29342194 29342194 G A OR12D3 Missense_Mutation p.L291F 0.53 deleterious(0.01) probably_damaging(0.993) TCGA-77-7463-01 6 29589917 29589917 G C GABBR1 Missense_Mutation p.F343L 0.37 deleterious(0.03) possibly_damaging(0.519) TCGA-77-7463-01 6 30539264 30539264 G A ABCF1 5'UTR 0.14 TCGA-77-7463-01 6 30951769 30951769 T C MUC21 Missense_Mutation p.F12L 0.19 tolerated_low_confidence(0.07) unknown(0) TCGA-77-7463-01 6 32008182 32008182 G T CYP21A2 Splice_Site p.X314_splice 0.46 TCGA-77-7463-01 6 33179534 33179534 G T RING1 Missense_Mutation p.V292L 0.37 deleterious(0.01) unknown(0) TCGA-77-7463-01 6 36269841 36269841 C A PNPLA1 Missense_Mutation p.P327T 0.34 tolerated_low_confidence(0.07) benign(0.367) TCGA-77-7463-01 6 41160619 41160619 G A TREML2 Missense_Mutation p.T269I 0.55 tolerated(0.49) benign(0.025) TCGA-77-7463-01 6 42604899 42604899 A T UBR2 Missense_Mutation p.S609C 0.40 deleterious(0) probably_damaging(0.998) TCGA-77-7463-01 6 47847447 47847447 T C PTCHD4 Missense_Mutation p.N378S 0.41 tolerated(0.29) probably_damaging(0.982) TCGA-77-7463-01 6 49660613 49660613 G T CRISP2 Missense_Mutation p.T202N 0.50 deleterious(0.01) possibly_damaging(0.884) TCGA-77-7463-01 6 5004265 5004265 C G RPP40 5'UTR 0.15 TCGA-77-7463-01 6 54806675 54806675 G T FAM83B Missense_Mutation p.G969V 0.16 tolerated(0.16) benign(0.006) TCGA-77-7463-01 6 56469407 56469407 T A DST Intron 0.43 TCGA-77-7463-01 6 69945022 69945022 A G BAI3 Silent p.L902L 0.35 TCGA-77-7463-01 6 79650409 79650409 G C PHIP 3'UTR 0.24 TCGA-77-7463-01 6 8413823 8413823 C T SLC35B3 Missense_Mutation p.V389M 0.23 tolerated(0.37) benign(0.004) TCGA-77-7463-01 6 84233502 84233502 G - PRSS35 Frame_Shift_Del p.G115Efs*25 0.31 TCGA-77-7463-01 6 88126481 88126481 G T C6ORF165 Missense_Mutation p.M189I 0.16 tolerated(0.09) benign(0.011) TCGA-77-7463-01 6 88854184 88854184 G C CNR1 Missense_Mutation p.H270Q 0.09 deleterious(0.01) benign(0.411) TCGA-77-7463-01 6 90276741 90276741 G C ANKRD6 Missense_Mutation p.V16L 0.55 tolerated(0.06) benign(0.09) TCGA-77-7463-01 6 90396666 90396666 G C MDN1 Missense_Mutation p.Q3843E 0.45 probably_damaging(0.909) TCGA-77-7463-01 7 100364833 100364833 A T ZAN Missense_Mutation p.T1605S 0.28 unknown(0) TCGA-77-7463-01 7 104748266 104748297 TGTTTTGTACTTCCGAAGATGGGCTTGTATCT - KMT2E Frame_Shift_Del p.V1121Gfs*7 0.16 TCGA-77-7463-01 7 113522097 113522097 C G PPP1R3A Missense_Mutation p.L321F 0.33 deleterious(0.02) benign(0.295) TCGA-77-7463-01 7 114563065 114563065 G C MDFIC Missense_Mutation p.G102R 0.37 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-77-7463-01 7 121693964 121693964 G T PTPRZ1 Missense_Mutation p.G2085C 0.31 deleterious(0) probably_damaging(1) TCGA-77-7463-01 7 123600028 123600028 G T SPAM1 Intron 0.33 TCGA-77-7463-01 7 131130661 131130661 G T MKLN1 Missense_Mutation p.M508I 0.41 tolerated(0.39) benign(0.191) TCGA-77-7463-01 7 131815242 131815242 C G PLXNA4 Missense_Mutation p.S1894T 0.24 deleterious(0) probably_damaging(0.991) TCGA-77-7463-01 7 138740002 138740002 C A ZC3HAV1 Silent p.A712A 0.29 TCGA-77-7463-01 7 142148958 142148958 A G TRBV5-5 Missense_Mutation p.S105P 0.20 deleterious(0) probably_damaging(0.995) TCGA-77-7463-01 7 1487249 1487249 T C MICALL2 Missense_Mutation p.R163G 0.33 tolerated(0.26) benign(0.005) TCGA-77-7463-01 7 150068937 150068937 G T REPIN1 Missense_Mutation p.A260S 0.45 tolerated(0.09) probably_damaging(0.996) TCGA-77-7463-01 7 150417920 150417920 G T GIMAP1 Silent p.L276L 0.21 TCGA-77-7463-01 7 150417921 150417921 G T GIMAP1 Missense_Mutation p.G277C 0.21 tolerated(0.38) benign(0.033) TCGA-77-7463-01 7 151814295 151814295 C T GALNT11 Silent p.I429I 0.40 TCGA-77-7463-01 7 154876070 154876070 C A HTR5A Missense_Mutation p.P316H 0.24 deleterious(0) probably_damaging(0.996) TCGA-77-7463-01 7 158590751 158590751 C A ESYT2 Missense_Mutation p.W178L 0.33 deleterious(0) probably_damaging(1) TCGA-77-7463-01 7 21940880 21940880 C A DNAH11 3'UTR 0.15 TCGA-77-7463-01 7 2952979 2952979 C A CARD11 Silent p.T987T 0.25 TCGA-77-7463-01 7 36397115 36397115 C A KIAA0895 Missense_Mutation p.S88I 0.34 tolerated_low_confidence(0.21) benign(0.323) TCGA-77-7463-01 7 38398387 38398387 T A TRGV3 Missense_Mutation p.K27M 0.43 tolerated(0.14) benign(0.069) TCGA-77-7463-01 7 40027320 40027320 T A CDK13 Missense_Mutation p.L445Q 0.48 deleterious(0.01) unknown(0) TCGA-77-7463-01 7 4026881 4026881 G T SDK1 Silent p.V686V 0.34 TCGA-77-7463-01 7 45005313 45005313 G T MYO1G Nonsense_Mutation p.Y768* 0.31 TCGA-77-7463-01 7 64023325 64023325 C T ZNF680 Missense_Mutation p.G3E 0.27 deleterious_low_confidence(0.04) probably_damaging(0.988) TCGA-77-7463-01 7 89749108 89749108 T A RP5-1121E10.2 Intron 0.22 TCGA-77-7463-01 7 91700303 91700303 A G AKAP9 Missense_Mutation p.I2198V 0.38 benign(0.02) TCGA-77-7463-01 7 93055706 93055706 T C CALCR Missense_Mutation p.I497V 0.27 tolerated(0.39) benign(0.034) TCGA-77-7463-01 7 98555608 98555608 T G TRRAP Missense_Mutation p.F2072C 0.35 benign(0.278) TCGA-77-7463-01 8 100205215 100205215 G C VPS13B Missense_Mutation p.W815C 0.52 deleterious(0) probably_damaging(0.977) TCGA-77-7463-01 8 104447954 104447954 G T DCAF13 Nonsense_Mutation p.E448* 0.45 TCGA-77-7463-01 8 105361136 105361136 A G DCSTAMP Missense_Mutation p.K119R 0.15 tolerated(0.16) benign(0.02) TCGA-77-7463-01 8 106813778 106813778 C A ZFPM2 Missense_Mutation p.P490T 0.13 tolerated(0.08) probably_damaging(0.999) TCGA-77-7463-01 8 110587401 110587401 C G SYBU Missense_Mutation p.E576Q 0.31 deleterious(0.02) probably_damaging(0.99) TCGA-77-7463-01 8 118159361 118159361 A G SLC30A8 Missense_Mutation p.I80M 0.10 deleterious(0) possibly_damaging(0.839) TCGA-77-7463-01 8 124408695 124408695 C A ATAD2 5'UTR 0.50 TCGA-77-7463-01 8 139164374 139164374 C G FAM135B Missense_Mutation p.A782P 0.52 tolerated(1) benign(0.002) TCGA-77-7463-01 8 139737643 139737643 G A COL22A1 Missense_Mutation p.P727L 0.11 unknown(0) TCGA-77-7463-01 8 144240277 144240277 G T LY6H Missense_Mutation p.Q65K 0.13 tolerated(0.22) benign(0.167) TCGA-77-7463-01 8 144994106 144994106 C A PLEC Missense_Mutation p.V3432L 0.65 benign(0.304) TCGA-77-7463-01 8 144995015 144995015 T C PLEC Missense_Mutation p.I3129V 0.58 possibly_damaging(0.757) TCGA-77-7463-01 8 1497712 1497712 T A DLGAP2 Missense_Mutation p.Y285N 0.49 tolerated(0.08) benign(0.273) TCGA-77-7463-01 8 22974351 22974352 - G TNFRSF10C Frame_Shift_Ins p.T197Dfs*14 0.11 TCGA-77-7463-01 8 22974396 22974397 - G TNFRSF10C Frame_Shift_Ins p.T212Dfs*14 0.17 TCGA-77-7463-01 8 28981540 28981540 C A KIF13B Splice_Site p.X1118_splice 0.50 TCGA-77-7463-01 8 38250399 38250399 A T LETM2 Missense_Mutation p.E82D 0.75 deleterious(0) probably_damaging(0.995) TCGA-77-7463-01 8 39080599 39080599 C G ADAM32 Missense_Mutation p.P456R 0.18 tolerated(0.3) benign(0.105) TCGA-77-7463-01 8 42295010 42295010 G A SLC20A2 Silent p.D340D 0.03 TCGA-77-7463-01 8 53573808 53573808 T C RB1CC1 Silent p.Q464Q 0.11 TCGA-77-7463-01 8 70981743 70981743 C A PRDM14 Missense_Mutation p.S118I 0.59 tolerated_low_confidence(0.12) benign(0.372) TCGA-77-7463-01 8 71056960 71056960 G A NCOA2 Missense_Mutation p.P910L 0.17 deleterious(0.04) probably_damaging(1) TCGA-77-7463-01 8 72948553 72948553 T C TRPA1 Missense_Mutation p.Y842C 0.13 tolerated(0.1) probably_damaging(0.954) TCGA-77-7463-01 8 72965087 72965087 G A RP11-383H13.1 3'UTR 0.13 TCGA-77-7463-01 8 92999186 92999186 G T RUNX1T1 Missense_Mutation p.R347S 0.18 tolerated(0.23) possibly_damaging(0.701) TCGA-77-7463-01 8 98078410 98078410 C T CPQ Silent p.I409I 0.09 TCGA-77-7463-01 8 99440590 99440590 T A KCNS2 Missense_Mutation p.V128E 0.30 tolerated(1) benign(0.019) TCGA-77-7463-01 9 102784345 102784345 T C ERP44 Silent p.L150L 0.57 TCGA-77-7463-01 9 109688073 109688073 A G ZNF462 Missense_Mutation p.D627G 0.16 probably_damaging(0.992) TCGA-77-7463-01 9 117087131 117087131 T G ORM1 Silent p.L130L 0.07 TCGA-77-7463-01 9 136308682 136308682 G T ADAMTS13 Missense_Mutation p.R807M 0.60 deleterious(0.01) probably_damaging(0.95) TCGA-77-7463-01 9 18680346 18680346 G A ADAMTSL1 Silent p.S391S 0.24 TCGA-77-7463-01 9 33463406 33463406 C T NOL6 Missense_Mutation p.V1010M 0.57 deleterious(0) probably_damaging(0.993) TCGA-77-7463-01 9 36122880 36122880 G C RECK Silent p.P918P 0.42 TCGA-77-7463-01 9 40701767 40701767 G C SPATA31A3 Missense_Mutation p.A83P 0.44 deleterious(0.01) benign(0.095) TCGA-77-7463-01 9 71155453 71155453 C T TMEM252 Missense_Mutation p.R93K 0.51 deleterious(0) probably_damaging(0.998) TCGA-77-7463-01 9 8404569 8404569 T G PTPRD Missense_Mutation p.D1393A 0.06 deleterious(0) possibly_damaging(0.582) TCGA-77-7463-01 9 94486459 94486459 G T ROR2 Missense_Mutation p.L773M 0.51 deleterious(0.01) probably_damaging(0.974) TCGA-77-7463-01 9 94841801 94841801 T C SPTLC1 Intron 0.56 TCGA-77-7463-01 X 106096868 106096868 A G TBC1D8B Silent p.R747R 0.57 TCGA-77-7463-01 X 106410965 106410965 G T NUP62CL Silent p.T36T 0.53 TCGA-77-7463-01 X 118797542 118797542 G C SEPT6 Missense_Mutation p.Q82E 0.55 tolerated(0.13) benign(0.012) TCGA-77-7463-01 X 120009094 120009094 G T CT47B1 Missense_Mutation p.A144E 0.55 tolerated(0.87) benign(0.023) TCGA-77-7463-01 X 120009407 120009407 G A CT47B1 Missense_Mutation p.P40S 0.57 tolerated(0.15) probably_damaging(0.998) TCGA-77-7463-01 X 123637454 123637454 C A TENM1 Missense_Mutation p.G1134V 0.52 deleterious(0) probably_damaging(0.997) TCGA-77-7463-01 X 129629372 129629372 C A RP1-274L7.1 Intron 0.57 TCGA-77-7463-01 X 129629377 129629377 T G RP1-274L7.1 Intron 0.55 TCGA-77-7463-01 X 132795880 132795880 T A GPC3 Splice_Site p.X454_splice 0.61 TCGA-77-7463-01 X 135080663 135080663 G C SLC9A6 Missense_Mutation p.G209A 0.56 deleterious(0.02) benign(0.23) TCGA-77-7463-01 X 135789183 135789183 T C ARHGEF6 Silent p.P310P 0.58 TCGA-77-7463-01 X 135789185 135789185 G A ARHGEF6 Missense_Mutation p.P310S 0.61 tolerated(0.05) benign(0.216) TCGA-77-7463-01 X 153694782 153694783 - T PLXNA3 Frame_Shift_Ins p.S956Lfs*51 0.39 TCGA-77-7463-01 X 19392595 19392595 C A MAP3K15 Nonsense_Mutation p.E925* 0.59 TCGA-77-7463-01 X 2541460 2541460 G A CD99P1 RNA 0.59 TCGA-77-7463-01 X 26212351 26212351 G A MAGEB6 Missense_Mutation p.G130S 0.52 tolerated(0.3) probably_damaging(0.937) TCGA-77-7463-01 X 37027370 37027370 G T FAM47C Missense_Mutation p.R296L 0.64 tolerated(0.3) benign(0) TCGA-77-7463-01 X 37027371 37027371 G T FAM47C Silent p.R296R 0.63 TCGA-77-7463-01 X 54987335 54987335 T C PFKFB1 Missense_Mutation p.Q80R 0.33 benign(0.197) TCGA-77-7463-01 X 55042022 55042022 G T ALAS2 Missense_Mutation p.S386Y 0.54 deleterious(0) probably_damaging(0.996) TCGA-77-7463-01 X 63411092 63411092 T A AMER1 Missense_Mutation p.E692V 0.50 deleterious(0.02) possibly_damaging(0.556) TCGA-77-7463-01 X 73960429 73960429 G A KIAA2022 Silent p.S1321S 0.56 TCGA-77-7463-01 X 73961070 73961070 T A KIAA2022 Missense_Mutation p.S1108C 0.48 tolerated(0.25) benign(0.009) TCGA-77-7463-01 X 78216308 78216308 C T P2RY10 Silent p.H97H 0.58 TCGA-77-7463-01 X 79947416 79947416 C A BRWD3 Missense_Mutation p.L1129F 0.83 deleterious(0) probably_damaging(0.986) TCGA-77-7463-01 X 89177798 89177798 G C TGIF2LX Missense_Mutation p.E238D 0.77 tolerated(0.23) benign(0.001) TCGA-77-7463-01 X 96502777 96502777 G - DIAPH2 Frame_Shift_Del p.R928Lfs*20 0.33 TCGA-77-7465-01 10 117309007 117309007 G A ATRNL1 Nonsense_Mutation p.W1252* 0.53 TCGA-77-7465-01 10 124358452 124358452 T A DMBT1 Missense_Mutation p.M1040K 0.05 deleterious(0.01) unknown(0) TCGA-77-7465-01 10 124358453 124358453 G T DMBT1 Missense_Mutation p.M1040I 0.05 tolerated(0.7) unknown(0) TCGA-77-7465-01 10 127455461 127455461 G A MMP21 Missense_Mutation p.P494S 0.54 deleterious(0) probably_damaging(0.987) TCGA-77-7465-01 10 135026274 135026274 G T KNDC1 Nonsense_Mutation p.E1431* 0.33 TCGA-77-7465-01 10 46224322 46224322 C G FAM21C Missense_Mutation p.L47V 0.56 deleterious(0) probably_damaging(0.999) TCGA-77-7465-01 10 49654414 49654414 A G ARHGAP22 3'UTR 0.62 TCGA-77-7465-01 10 90682943 90682943 G T STAMBPL1 Missense_Mutation p.V425L 0.35 tolerated(0.18) benign(0) TCGA-77-7465-01 10 95791102 95791102 A G PLCE1 Missense_Mutation p.K100R 0.48 tolerated_low_confidence(0.06) benign(0.002) TCGA-77-7465-01 11 103907849 103907849 C A DDI1 Missense_Mutation p.A100E 0.56 tolerated(0.31) benign(0.246) TCGA-77-7465-01 11 111899617 111899617 C A DLAT Missense_Mutation p.P203Q 0.45 deleterious(0.04) possibly_damaging(0.534) TCGA-77-7465-01 11 11400702 11400702 C A GALNT18 Missense_Mutation p.R235S 0.60 deleterious(0) probably_damaging(0.998) TCGA-77-7465-01 11 117859131 117859131 T G IL10RA Missense_Mutation p.F34L 0.54 deleterious(0) probably_damaging(0.995) TCGA-77-7465-01 11 118772758 118772758 T C BCL9L Missense_Mutation p.H565R 0.32 probably_damaging(0.994) TCGA-77-7465-01 11 123848026 123848026 C G OR10S1 Missense_Mutation p.E125Q 0.37 tolerated(0.13) probably_damaging(0.997) TCGA-77-7465-01 11 1263726 1263726 C G MUC5B Nonsense_Mutation p.Y1872* 0.62 TCGA-77-7465-01 11 30033187 30033187 G T KCNA4 Missense_Mutation p.H347N 0.54 tolerated(0.78) benign(0.012) TCGA-77-7465-01 11 43427340 43427340 C T TTC17 Missense_Mutation p.H534Y 0.52 deleterious(0.05) benign(0.124) TCGA-77-7465-01 11 4703324 4703324 C A OR51E2 Missense_Mutation p.M206I 0.44 tolerated(0.7) probably_damaging(0.989) TCGA-77-7465-01 11 47446744 47446744 G A PSMC3 Silent p.D71D 0.54 TCGA-77-7465-01 11 48328293 48328293 C A OR4S1 Missense_Mutation p.D173E 0.40 deleterious(0) probably_damaging(0.998) TCGA-77-7465-01 11 5153134 5153135 - T OR52A5 Frame_Shift_Ins p.H247Tfs*58 0.23 TCGA-77-7465-01 11 5255720 5255720 C A HBD 5'UTR 0.61 TCGA-77-7465-01 11 55322161 55322161 T A OR4C15 Missense_Mutation p.S127T 0.31 tolerated_low_confidence(0.05) benign(0.056) TCGA-77-7465-01 11 55595558 55595558 G T OR5L2 Silent p.L288L 0.39 TCGA-77-7465-01 11 55703592 55703592 G A OR5I1 Silent p.S95S 0.27 TCGA-77-7465-01 11 55703593 55703593 G A OR5I1 Missense_Mutation p.S95F 0.29 deleterious(0) probably_damaging(0.996) TCGA-77-7465-01 11 56237496 56237496 A T OR5M3 Missense_Mutation p.W160R 0.40 tolerated(0.16) benign(0.009) TCGA-77-7465-01 11 56258512 56258512 T C OR5M8 Missense_Mutation p.Y112C 0.36 tolerated(0.05) benign(0.062) TCGA-77-7465-01 11 56380144 56380144 T A OR5M1 Missense_Mutation p.T279S 0.28 tolerated(0.11) benign(0.009) TCGA-77-7465-01 11 56380402 56380402 G T OR5M1 Missense_Mutation p.R193S 0.36 tolerated(0.12) benign(0.007) TCGA-77-7465-01 11 56467938 56467938 C T OR9G1 Silent p.G25G 0.16 TCGA-77-7465-01 11 56468114 56468114 G T OR9G1 Missense_Mutation p.C84F 0.21 tolerated(1) benign(0.009) TCGA-77-7465-01 11 56468615 56468615 A T OR9G1 Missense_Mutation p.Y251F 0.15 tolerated(0.2) benign(0.209) TCGA-77-7465-01 11 57076128 57076128 C T TNKS1BP1 Missense_Mutation p.V1353M 0.26 tolerated(0.18) benign(0.032) TCGA-77-7465-01 11 58274929 58274929 A G OR5B21 Missense_Mutation p.F217S 0.10 deleterious_low_confidence(0.02) benign(0.077) TCGA-77-7465-01 11 59190129 59190129 T A OR5A2 Missense_Mutation p.T100S 0.35 tolerated(0.05) benign(0.103) TCGA-77-7465-01 11 62288621 62288621 C T AHNAK Missense_Mutation p.G4423D 0.33 probably_damaging(0.983) TCGA-77-7465-01 11 64557251 64557251 G T MAP4K2 Missense_Mutation p.Q776K 0.31 deleterious(0) probably_damaging(0.994) TCGA-77-7465-01 11 64603677 64603677 T A CDC42BPG Missense_Mutation p.Q527L 0.30 tolerated(0.07) benign(0.08) TCGA-77-7465-01 11 64695773 64695773 G C PPP2R5B Missense_Mutation p.E200Q 0.31 deleterious(0.02) probably_damaging(0.966) TCGA-77-7465-01 11 65647711 65647711 C A CTSW Missense_Mutation p.F42L 0.27 deleterious(0) probably_damaging(1) TCGA-77-7465-01 11 67430833 67430833 G A ALDH3B2 Silent p.T337T 0.20 TCGA-77-7465-01 11 68478411 68478411 C G MTL5 Missense_Mutation p.G422A 0.28 tolerated(0.15) benign(0.037) TCGA-77-7465-01 11 69063670 69063670 C A MYEOV Silent p.G251G 0.24 TCGA-77-7465-01 11 70185366 70185366 G A PPFIA1 Missense_Mutation p.R554H 0.06 deleterious(0.04) benign(0.027) TCGA-77-7465-01 11 71277181 71277181 G A KRTAP5-10 Missense_Mutation p.C183Y 0.71 unknown(0) TCGA-77-7465-01 11 842523 842523 C G POLR2L 5'UTR 0.56 TCGA-77-7465-01 11 92568232 92568232 G A FAT3 Silent p.V3356V 0.60 TCGA-77-7465-01 12 101576631 101576631 T A SLC5A8 Missense_Mutation p.Y372F 0.30 tolerated(0.66) benign(0.005) TCGA-77-7465-01 12 10466038 10466038 C A KLRD1 Nonsense_Mutation p.Y115* 0.18 TCGA-77-7465-01 12 107075922 107075922 T C RFX4 Intron 0.46 TCGA-77-7465-01 12 109536308 109536308 C A UNG Silent p.A68A 0.57 TCGA-77-7465-01 12 110883284 110883294 GACTTCTGATA - ARPC3 Frame_Shift_Del p.R25Qfs*16 0.25 TCGA-77-7465-01 12 112674787 112674787 C A HECTD4 Silent p.A1656A 0.24 TCGA-77-7465-01 12 120295442 120295442 C T CIT Missense_Mutation p.R100K 0.28 tolerated(0.78) benign(0.001) TCGA-77-7465-01 12 120582836 120582836 C A GCN1L1 Silent p.G1682G 0.25 TCGA-77-7465-01 12 130921608 130921608 C T RIMBP2 Missense_Mutation p.D612N 0.20 tolerated(0.09) benign(0.199) TCGA-77-7465-01 12 133372523 133372523 C G GOLGA3 Missense_Mutation p.G795A 0.58 tolerated(0.27) possibly_damaging(0.779) TCGA-77-7465-01 12 15262375 15262375 C G RERG Missense_Mutation p.G90A 0.33 tolerated(0.56) benign(0.114) TCGA-77-7465-01 12 20803466 20803466 G C PDE3A Missense_Mutation p.G953R 0.19 deleterious(0) probably_damaging(0.988) TCGA-77-7465-01 12 25260945 25260945 T C LRMP Missense_Mutation p.I484T 0.34 deleterious(0.05) benign(0.047) TCGA-77-7465-01 12 2797671 2797671 T A CACNA1C Missense_Mutation p.F1996Y 0.57 tolerated_low_confidence(1) benign(0.028) TCGA-77-7465-01 12 2944106 2944106 C T NRIP2 Missense_Mutation p.C15Y 0.54 tolerated_low_confidence(0.16) benign(0.012) TCGA-77-7465-01 12 29524518 29524518 C T ERGIC2 Missense_Mutation p.D17N 0.39 deleterious(0) probably_damaging(1) TCGA-77-7465-01 12 49445149 49445149 G - KMT2D Frame_Shift_Del p.Q773Sfs*157 0.18 TCGA-77-7465-01 12 50367054 50367054 C T AQP6 Missense_Mutation p.A33V 0.34 deleterious(0.03) possibly_damaging(0.822) TCGA-77-7465-01 12 50392947 50392947 G A RACGAP1 Silent p.L286L 0.52 TCGA-77-7465-01 12 50479957 50479957 T A SMARCD1 Nonsense_Mutation p.L64* 0.29 TCGA-77-7465-01 12 50794697 50794698 - T LARP4 5'UTR 0.28 TCGA-77-7465-01 12 52844381 52844381 G A KRT6B Silent p.N188N 0.29 TCGA-77-7465-01 12 54333242 54333242 G A HOXC13 Silent p.A184A 0.44 TCGA-77-7465-01 12 54423610 54423610 A T HOXC6 Missense_Mutation p.N191I 0.30 deleterious(0) probably_damaging(0.999) TCGA-77-7465-01 12 55846625 55846625 G C OR6C2 Missense_Mutation p.V210L 0.29 tolerated_low_confidence(0.47) benign(0.062) TCGA-77-7465-01 12 56333886 56333886 G A DGKA Missense_Mutation p.D244N 0.34 deleterious(0.05) benign(0.015) TCGA-77-7465-01 12 5721912 5721912 C G ANO2 Missense_Mutation p.G666A 0.19 tolerated(0.12) probably_damaging(0.999) TCGA-77-7465-01 12 59277363 59277363 C G LRIG3 Missense_Mutation p.D419H 0.07 deleterious(0.03) possibly_damaging(0.657) TCGA-77-7465-01 12 75601207 75601207 G T KCNC2 Missense_Mutation p.A186E 0.31 tolerated(0.3) benign(0.043) TCGA-77-7465-01 12 78513446 78513446 C G NAV3 Missense_Mutation p.S1157C 0.36 deleterious(0.04) probably_damaging(0.967) TCGA-77-7465-01 12 80730213 80730213 G A OTOGL Missense_Mutation p.E1532K 0.29 deleterious(0) probably_damaging(0.973) TCGA-77-7465-01 12 81239687 81239687 C T LIN7A Missense_Mutation p.G102D 0.19 deleterious(0) benign(0.143) TCGA-77-7465-01 12 8756857 8756857 T C AICDA 3'UTR 0.19 TCGA-77-7465-01 12 97885756 97885756 C A MIR1251 RNA 0.32 TCGA-77-7465-01 13 113699634 113699634 G T MCF2L Missense_Mutation p.D110Y 0.42 deleterious(0) probably_damaging(0.998) TCGA-77-7465-01 13 20242585 20242585 T - MPHOSPH8 Frame_Shift_Del p.P750Qfs*58 0.33 TCGA-77-7465-01 13 28631560 28631560 G A FLT3 Silent p.T136T 0.49 TCGA-77-7465-01 13 39452444 39452444 A G FREM2 Missense_Mutation p.R2949G 0.62 deleterious(0) possibly_damaging(0.541) TCGA-77-7465-01 13 52548987 52548987 G T ATP7B Silent p.A123A 0.59 TCGA-77-7465-01 13 76179898 76179898 C A UCHL3 Missense_Mutation p.R215S 0.51 deleterious(0) probably_damaging(0.997) TCGA-77-7465-01 14 101005563 101005563 G C BEGAIN Silent p.A175A 0.43 TCGA-77-7465-01 14 106791107 106791107 C T IGHV3-30 Silent p.V83V 0.13 TCGA-77-7465-01 14 106962973 106962973 G T IGHV1-45 Missense_Mutation p.S103R 0.48 tolerated(0.16) benign(0.081) TCGA-77-7465-01 14 19553831 19553831 G - POTEG Frame_Shift_Del p.D139Ifs*28 0.09 TCGA-77-7465-01 14 20019857 20019857 C A POTEM Missense_Mutation p.D122Y 0.50 deleterious(0) probably_damaging(0.979) TCGA-77-7465-01 14 21489996 21489996 A G NDRG2 Silent p.P129P 0.60 TCGA-77-7465-01 14 23511727 23511727 C A PSMB11 Missense_Mutation p.S98Y 0.48 deleterious(0) probably_damaging(0.995) TCGA-77-7465-01 14 29236532 29236532 C T FOXG1 Missense_Mutation p.S16F 0.31 tolerated_low_confidence(0.08) unknown(0) TCGA-77-7465-01 14 44975639 44975639 A C FSCB Missense_Mutation p.H184Q 0.45 tolerated(0.43) benign(0.032) TCGA-77-7465-01 14 45605286 45605286 C T FANCM Nonsense_Mutation p.R18* 0.41 TCGA-77-7465-01 14 52535542 52535542 G - NID2 Frame_Shift_Del p.V58Wfs*2 0.29 TCGA-77-7465-01 14 55818985 55818985 G A FBXO34 Missense_Mutation p.R626H 0.53 deleterious(0) probably_damaging(0.999) TCGA-77-7465-01 14 70634292 70634292 T C SLC8A3 Missense_Mutation p.K283R 0.60 tolerated(0.38) benign(0.046) TCGA-77-7465-01 14 94909514 94909514 G T SERPINA11 Missense_Mutation p.N322K 0.13 tolerated(0.12) possibly_damaging(0.506) TCGA-77-7465-01 15 101432726 101432726 G T ALDH1A3 Silent p.T119T 0.30 TCGA-77-7465-01 15 20193195 20193195 C A IGHV3OR15-7 Nonsense_Mutation p.E25* 0.37 TCGA-77-7465-01 15 20644267 20644267 C G HERC2P3 RNA 0.61 TCGA-77-7465-01 15 23890700 23890700 G T MAGEL2 Silent p.G127G 0.23 TCGA-77-7465-01 15 23890766 23890766 C A MAGEL2 Silent p.L105L 0.29 TCGA-77-7465-01 15 24921062 24921062 C T NPAP1 Silent p.P16P 0.23 TCGA-77-7465-01 15 25444515 25444515 C T SNORD115-14 3'Flank 0.36 TCGA-77-7465-01 15 25468431 25468431 G T SNORD115-29 RNA 0.26 TCGA-77-7465-01 15 25971227 25971227 G T ATP10A Missense_Mutation p.H284N 0.37 deleterious(0.01) possibly_damaging(0.739) TCGA-77-7465-01 15 26793080 26793080 G T GABRB3 Missense_Mutation p.L428I 0.39 tolerated(0.16) benign(0.34) TCGA-77-7465-01 15 29092251 29092251 G C GOLGA6L7P RNA 0.44 TCGA-77-7465-01 15 40318215 40318215 G A EIF2AK4 Missense_Mutation p.R1476H 0.59 deleterious(0.04) benign(0.112) TCGA-77-7465-01 15 40764283 40764283 G A CHST14 Missense_Mutation p.V291M 0.54 tolerated(0.18) possibly_damaging(0.593) TCGA-77-7465-01 15 43873200 43873200 C T PPIP5K1 Missense_Mutation p.G354E 0.24 deleterious(0) probably_damaging(0.996) TCGA-77-7465-01 15 48431278 48431278 G C SLC24A5 Missense_Mutation p.K328N 0.34 tolerated(0.22) benign(0.01) TCGA-77-7465-01 15 50193357 50193357 C A ATP8B4 Nonsense_Mutation p.E741* 0.33 TCGA-77-7465-01 15 51634183 51634183 C A GLDN Missense_Mutation p.A101E 0.32 tolerated(1) benign(0.018) TCGA-77-7465-01 15 53994410 53994410 A T WDR72 Missense_Mutation p.F497Y 0.35 deleterious(0) probably_damaging(0.973) TCGA-77-7465-01 15 54527264 54527264 G C UNC13C Silent p.P1036P 0.29 TCGA-77-7465-01 15 64422489 64422489 T C SNX1 Silent p.A328A 0.29 TCGA-77-7465-01 15 81598819 81598819 C G IL16 Missense_Mutation p.F1246L 0.31 deleterious(0.03) probably_damaging(1) TCGA-77-7465-01 16 10996615 10996615 C A CIITA Silent p.I243I 0.40 TCGA-77-7465-01 16 21858740 21858740 G T NPIPB4 Nonsense_Mutation p.Y81* 0.12 TCGA-77-7465-01 16 23713849 23713849 G T ERN2 Missense_Mutation p.L363M 0.29 tolerated(0.08) probably_damaging(0.967) TCGA-77-7465-01 16 27508984 27508984 G A GTF3C1 Missense_Mutation p.P775L 0.26 tolerated(0.08) benign(0.058) TCGA-77-7465-01 16 28841222 28841222 G C ATXN2L Missense_Mutation p.E293Q 0.40 deleterious(0.05) probably_damaging(0.999) TCGA-77-7465-01 16 28841262 28841262 G - ATXN2L Frame_Shift_Del p.S306Tfs*111 0.30 TCGA-77-7465-01 16 30666183 30666183 G A PRR14 Missense_Mutation p.E298K 0.30 tolerated(0.05) benign(0.045) TCGA-77-7465-01 16 30970171 30970171 A T SETD1A Missense_Mutation p.Y40F 0.27 probably_damaging(0.97) TCGA-77-7465-01 16 31926318 31926318 G T ZNF267 Nonsense_Mutation p.E250* 0.30 TCGA-77-7465-01 16 3304621 3304621 G T MEFV Silent p.A149A 0.38 TCGA-77-7465-01 16 335411 335411 G A PDIA2 Missense_Mutation p.E299K 0.44 tolerated(0.8) benign(0.348) TCGA-77-7465-01 16 3641008 3641008 A G SLX4 Silent p.A877A 0.34 TCGA-77-7465-01 16 47120233 47120233 T C NETO2 Missense_Mutation p.T301A 0.14 tolerated(0.42) benign(0.07) TCGA-77-7465-01 16 48142360 48142360 C A ABCC12 Missense_Mutation p.A788S 0.35 deleterious(0.04) possibly_damaging(0.829) TCGA-77-7465-01 16 56704816 56704816 G A MT1H Missense_Mutation p.C34Y 0.38 deleterious(0.04) probably_damaging(0.989) TCGA-77-7465-01 16 58079275 58079275 G C MMP15 Silent p.A645A 0.19 TCGA-77-7465-01 16 58550558 58550558 C A SETD6 Missense_Mutation p.A218D 0.39 deleterious(0) probably_damaging(0.987) TCGA-77-7465-01 16 61687602 61687602 G T CDH8 Missense_Mutation p.D770E 0.18 tolerated(0.52) probably_damaging(0.992) TCGA-77-7465-01 16 64984838 64984838 C T CDH11 Missense_Mutation p.D576N 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-77-7465-01 16 67006829 67006829 A T CES3 Silent p.P531P 0.40 TCGA-77-7465-01 16 67264098 67264098 G C FHOD1 Missense_Mutation p.P1029A 0.37 tolerated(0.19) benign(0.017) TCGA-77-7465-01 16 67981309 67981309 C G SLC12A4 Missense_Mutation p.R668P 0.22 deleterious(0) probably_damaging(0.962) TCGA-77-7465-01 16 79245561 79245561 G C WWOX Silent p.L371L 0.53 TCGA-77-7465-01 16 84213413 84213413 C A TAF1C Missense_Mutation p.G582C 0.62 tolerated(0.18) possibly_damaging(0.846) TCGA-77-7465-01 16 9857228 9857228 C T GRIN2A Silent p.L1391L 0.31 TCGA-77-7465-01 17 12608491 12608491 T A MYOCD Silent p.A34A 0.71 TCGA-77-7465-01 17 17701059 17701059 G T RAI1 Silent p.V1599V 0.58 TCGA-77-7465-01 17 27580690 27580690 G A CRYBA1 Silent p.E130E 0.30 TCGA-77-7465-01 17 32483291 32483291 T A ASIC2 Silent p.P87P 0.38 TCGA-77-7465-01 17 33690155 33690155 T C SLFN11 Silent p.Q224Q 0.33 TCGA-77-7465-01 17 36489886 36489886 G C GPR179 Missense_Mutation p.T607S 0.30 deleterious(0) probably_damaging(0.981) TCGA-77-7465-01 17 3680937 3680937 C T ITGAE Missense_Mutation p.A18T 0.48 deleterious(0.03) benign(0.392) TCGA-77-7465-01 17 3851110 3851110 C A ATP2A3 Missense_Mutation p.V224L 0.52 deleterious(0.03) possibly_damaging(0.51) TCGA-77-7465-01 17 42284721 42284721 G A UBTF Silent p.D728D 0.58 TCGA-77-7465-01 17 47039102 47039102 C T GIP Missense_Mutation p.V113M 0.28 tolerated(0.11) benign(0.01) TCGA-77-7465-01 17 56166510 56166521 ACAAGAAATATA - DYNLL2 In_Frame_Del p.K48_N51del 0.20 TCGA-77-7465-01 17 58506841 58506841 G T C17orf64 Missense_Mutation p.R183L 0.31 deleterious(0) possibly_damaging(0.866) TCGA-77-7465-01 17 60865920 60865920 T A MARCH10 Missense_Mutation p.E44V 0.41 deleterious(0) possibly_damaging(0.748) TCGA-77-7465-01 17 61607783 61607783 G T KCNH6 Silent p.T185T 0.32 TCGA-77-7465-01 17 62041100 62041100 G A SCN4A Missense_Mutation p.S513L 0.25 tolerated(0.19) benign(0.001) TCGA-77-7465-01 17 63223423 63223423 G C RGS9 Silent p.T641T 0.17 TCGA-77-7465-01 17 72306184 72306184 G - DNAI2 Frame_Shift_Del p.V460Cfs*36 0.24 TCGA-77-7465-01 17 7577548 7577548 C A TP53 Missense_Mutation p.G245C 0.56 deleterious(0) probably_damaging(1) TCGA-77-7465-01 17 78318983 78318983 G C RNF213 Missense_Mutation p.G2283A 0.33 possibly_damaging(0.906) TCGA-77-7465-01 18 21119763 21119763 G A NPC1 Intron 0.30 TCGA-77-7465-01 18 22804480 22804480 C T ZNF521 Silent p.G1134G 0.27 TCGA-77-7465-01 18 2538915 2538915 T A METTL4 3'UTR 0.78 TCGA-77-7465-01 18 2539091 2539091 G C METTL4 Missense_Mutation p.R443G 0.74 deleterious(0) probably_damaging(1) TCGA-77-7465-01 18 25532136 25532136 T C CDH2 Missense_Mutation p.Y901C 0.32 deleterious(0) probably_damaging(0.994) TCGA-77-7465-01 18 34261445 34261445 G C FHOD3 Missense_Mutation p.E453Q 0.43 deleterious_low_confidence(0.02) probably_damaging(0.993) TCGA-77-7465-01 18 50985814 50985814 G T DCC Missense_Mutation p.S1202I 0.37 deleterious(0.02) possibly_damaging(0.811) TCGA-77-7465-01 18 51820863 51820863 A T POLI 3'UTR 0.32 TCGA-77-7465-01 18 52937147 52937147 C G TCF4 Silent p.P381P 0.35 TCGA-77-7465-01 18 57122129 57122129 T C CCBE1 Missense_Mutation p.K203R 0.39 tolerated(0.06) benign(0.004) TCGA-77-7465-01 18 61306551 61306551 C A SERPINB4 Missense_Mutation p.M212I 0.09 deleterious(0.02) possibly_damaging(0.778) TCGA-77-7465-01 18 70417318 70417318 C A NETO1 Missense_Mutation p.R507I 0.24 deleterious_low_confidence(0) possibly_damaging(0.758) TCGA-77-7465-01 18 71740878 71740878 C A FBXO15 Missense_Mutation p.A451S 0.30 tolerated(1) benign(0.003) TCGA-77-7465-01 19 10624444 10624444 A C S1PR5 3'UTR 0.31 TCGA-77-7465-01 19 1255487 1255487 A C MIDN Missense_Mutation p.Q308P 0.36 deleterious(0) benign(0) TCGA-77-7465-01 19 12995820 12995820 G A KLF1 Missense_Mutation p.S323L 0.41 deleterious(0) probably_damaging(0.953) TCGA-77-7465-01 19 13445270 13445270 G A CACNA1A Missense_Mutation p.R374W 0.39 probably_damaging(0.942) TCGA-77-7465-01 19 15918251 15918251 G T OR10H1 Silent p.G199G 0.31 TCGA-77-7465-01 19 17373742 17373742 C A USHBP1 Silent p.V87V 0.25 TCGA-77-7465-01 19 19105192 19105192 T A SUGP2 Nonsense_Mutation p.K1078* 0.36 TCGA-77-7465-01 19 19337581 19337581 C A NCAN Silent p.P453P 0.40 TCGA-77-7465-01 19 19369332 19369332 C A HAPLN4 Missense_Mutation p.G273W 0.31 deleterious(0) probably_damaging(0.987) TCGA-77-7465-01 19 19765442 19765442 G T ATP13A1 Missense_Mutation p.H575N 0.34 deleterious(0) probably_damaging(0.992) TCGA-77-7465-01 19 20735331 20735331 C T ZNF737 Missense_Mutation p.G59E 0.29 tolerated(0.36) possibly_damaging(0.907) TCGA-77-7465-01 19 22157366 22157366 C A ZNF208 Missense_Mutation p.C157F 0.30 tolerated(0.72) benign(0) TCGA-77-7465-01 19 22272145 22272145 C T ZNF257 Silent p.T531T 0.16 TCGA-77-7465-01 19 22940444 22940444 G T ZNF99 Missense_Mutation p.T756N 0.25 deleterious(0.02) probably_damaging(0.996) TCGA-77-7465-01 19 35175558 35175558 T C ZNF302 Missense_Mutation p.C206R 0.35 deleterious(0) probably_damaging(1) TCGA-77-7465-01 19 36236892 36236892 G C PSENEN Missense_Mutation p.G21R 0.37 deleterious(0.02) probably_damaging(0.944) TCGA-77-7465-01 19 36342390 36342390 C A NPHS1 Silent p.P81P 0.38 TCGA-77-7465-01 19 38774425 38774425 G C SPINT2 Missense_Mutation p.A89P 0.28 deleterious(0.02) benign(0.212) TCGA-77-7465-01 19 39051989 39051992 CCGC - RYR1 Frame_Shift_Del p.R4174Pfs*35 0.34 TCGA-77-7465-01 19 44901412 44901412 A G ZNF285 5'UTR 0.29 TCGA-77-7465-01 19 45728130 45728130 C G EXOC3L2 Missense_Mutation p.S149T 0.32 tolerated(0.09) probably_damaging(0.913) TCGA-77-7465-01 19 46094741 46094741 C A GPR4 Silent p.L128L 0.35 TCGA-77-7465-01 19 46997104 46997104 G T PNMAL2 Missense_Mutation p.T540K 0.41 deleterious_low_confidence(0) unknown(0) TCGA-77-7465-01 19 47425285 47425285 C G ARHGAP35 Missense_Mutation p.T1118S 0.16 tolerated(0.23) probably_damaging(0.995) TCGA-77-7465-01 19 47861194 47861194 G T DHX34 Silent p.L363L 0.20 TCGA-77-7465-01 19 50905143 50905143 A T POLD1 Missense_Mutation p.H142L 0.10 tolerated(0.06) possibly_damaging(0.903) TCGA-77-7465-01 19 51410334 51410334 A T KLK4 Silent p.S207S 0.37 TCGA-77-7465-01 19 51451948 51451948 A G KLK5 Missense_Mutation p.I225T 0.41 deleterious(0) benign(0.431) TCGA-77-7465-01 19 51630541 51630541 G A SIGLEC9 Missense_Mutation p.V335I 0.46 deleterious(0.02) benign(0.05) TCGA-77-7465-01 19 51650517 51650517 G A SIGLEC7 Silent p.A388A 0.27 TCGA-77-7465-01 19 51770716 51770716 A T SIGLECL1 Missense_Mutation p.E167V 0.33 tolerated(0.13) benign(0.017) TCGA-77-7465-01 19 51918174 51918174 G C SIGLEC10 Missense_Mutation p.L507V 0.19 deleterious(0.04) probably_damaging(0.951) TCGA-77-7465-01 19 52919442 52919442 T A ZNF528 Missense_Mutation p.F446Y 0.40 deleterious(0.02) probably_damaging(1) TCGA-77-7465-01 19 54137925 54137925 C A DPRX Missense_Mutation p.P57T 0.26 deleterious(0.04) possibly_damaging(0.532) TCGA-77-7465-01 19 54183218 54183218 G T MIR519E RNA 0.31 TCGA-77-7465-01 19 54189792 54189792 G T MIR519C RNA 0.31 TCGA-77-7465-01 19 54759447 54759447 T A LILRB5 Splice_Site p.X219_splice 0.47 TCGA-77-7465-01 19 54818788 54818788 G T LILRA5 Silent p.G270G 0.28 TCGA-77-7465-01 19 56459363 56459363 A T NLRP8 Missense_Mutation p.Y32F 0.29 tolerated_low_confidence(0.7) benign(0.071) TCGA-77-7465-01 19 57036302 57036302 C A ZNF471 Missense_Mutation p.P289Q 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-77-7465-01 19 5705958 5705958 C A LONP1 Nonsense_Mutation p.E398* 0.40 TCGA-77-7465-01 19 57175073 57175073 G C ZNF835 Missense_Mutation p.D498E 0.27 tolerated(0.94) benign(0.001) TCGA-77-7465-01 19 57286251 57286251 C A ZIM2 Missense_Mutation p.E463D 0.27 deleterious(0.02) possibly_damaging(0.76) TCGA-77-7465-01 19 57326400 57326400 C A PEG3 Missense_Mutation p.S1137I 0.28 tolerated(0.08) benign(0.374) TCGA-77-7465-01 19 58101416 58101416 T A ZIK1 Silent p.S79S 0.28 TCGA-77-7465-01 19 58868483 58868483 C T ZNF497 Silent p.A173A 0.45 TCGA-77-7465-01 19 58992135 58992135 G T ZNF446 3'UTR 0.36 TCGA-77-7465-01 19 6002787 6002787 G C RFX2 Missense_Mutation p.S532C 0.25 deleterious(0) possibly_damaging(0.759) TCGA-77-7465-01 19 6833257 6833257 A T VAV1 Missense_Mutation p.E524V 0.40 deleterious(0.01) possibly_damaging(0.616) TCGA-77-7465-01 19 8587411 8587411 C A MYO1F Missense_Mutation p.V1024L 0.23 tolerated(0.32) benign(0.001) TCGA-77-7465-01 19 9577588 9577588 C T ZNF560 Missense_Mutation p.A679T 0.29 tolerated(1) benign(0) TCGA-77-7465-01 1 10327504 10327504 T G KIF1B Missense_Mutation p.L166V 0.32 deleterious(0) probably_damaging(0.962) TCGA-77-7465-01 1 10338171 10338171 G T KIF1B Nonsense_Mutation p.G383* 0.35 TCGA-77-7465-01 1 10459130 10459130 G C PGD 5'Flank 0.32 TCGA-77-7465-01 1 119965152 119965152 A G HSD3B2 Missense_Mutation p.Y343C 0.27 deleterious(0) possibly_damaging(0.682) TCGA-77-7465-01 1 120906396 120906396 G A RP11-439A17.4 5'Flank 0.37 TCGA-77-7465-01 1 142713693 142713693 G T RP11-417J8.6 RNA 0.28 TCGA-77-7465-01 1 147120138 147120138 T C ACP6 Silent p.K351K 0.48 TCGA-77-7465-01 1 153748578 153748578 G T SLC27A3 Missense_Mutation p.R249L 0.22 deleterious(0) probably_damaging(0.928) TCGA-77-7465-01 1 155252376 155252376 G A HCN3 Silent p.V151V 0.36 TCGA-77-7465-01 1 155307397 155307397 G - ASH1L 3'UTR 0.24 TCGA-77-7465-01 1 155584634 155584634 G T MSTO1 3'UTR 0.40 TCGA-77-7465-01 1 157666904 157666904 G A FCRL3 Intron 0.42 TCGA-77-7465-01 1 159778947 159778947 G - FCRL6 Frame_Shift_Del p.G173Efs*93 0.24 TCGA-77-7465-01 1 159857632 159857632 T A CCDC19 Missense_Mutation p.K196M 0.34 deleterious(0) possibly_damaging(0.841) TCGA-77-7465-01 1 160970834 160970834 C T F11R Missense_Mutation p.V73I 0.32 tolerated(0.19) benign(0.361) TCGA-77-7465-01 1 162740156 162740156 T C DDR2 Missense_Mutation p.M453T 0.30 tolerated(0.15) benign(0.002) TCGA-77-7465-01 1 167814975 167814975 G A ADCY10 Nonsense_Mutation p.Q945* 0.35 TCGA-77-7465-01 1 171765750 171765750 T G METTL13 Missense_Mutation p.C652G 0.40 tolerated(0.05) probably_damaging(0.984) TCGA-77-7465-01 1 173486724 173486724 C A SLC9C2 Silent p.L953L 0.35 TCGA-77-7465-01 1 173542341 173542341 A T SLC9C2 Missense_Mutation p.F342L 0.29 tolerated(0.07) possibly_damaging(0.755) TCGA-77-7465-01 1 175372671 175372671 C T TNR Nonsense_Mutation p.W194* 0.36 TCGA-77-7465-01 1 19478333 19478333 C T UBR4 Silent p.E2339E 0.46 TCGA-77-7465-01 1 204230537 204230537 C T PLEKHA6 Missense_Mutation p.E141K 0.25 deleterious(0) possibly_damaging(0.864) TCGA-77-7465-01 1 206318421 206318421 G T CTSE Missense_Mutation p.C60F 0.52 tolerated(0.55) probably_damaging(0.946) TCGA-77-7465-01 1 206653396 206653396 G T IKBKE Missense_Mutation p.R427L 0.54 deleterious(0.03) benign(0.105) TCGA-77-7465-01 1 216019355 216019355 C T USH2A Missense_Mutation p.E2956K 0.42 benign(0.016) TCGA-77-7465-01 1 216052268 216052268 C A USH2A Missense_Mutation p.G2799V 0.56 probably_damaging(1) TCGA-77-7465-01 1 217955552 217955552 C T SPATA17 Missense_Mutation p.R254C 0.45 deleterious(0) probably_damaging(1) TCGA-77-7465-01 1 217975059 217975059 G A SPATA17 Splice_Site p.X291_splice 0.27 TCGA-77-7465-01 1 220091971 220091971 A G SLC30A10 Intron 0.27 TCGA-77-7465-01 1 223285157 223285157 G T TLR5 Missense_Mutation p.P406H 0.18 tolerated(0.1) benign(0.058) TCGA-77-7465-01 1 228210554 228210554 G T WNT3A Missense_Mutation p.W86C 0.55 deleterious(0) probably_damaging(0.998) TCGA-77-7465-01 1 228336071 228336071 G T GUK1 Intron 0.19 TCGA-77-7465-01 1 230829197 230829197 G T COG2 3'UTR 0.57 TCGA-77-7465-01 1 23101732 23101732 A T EPHB2 Intron 0.50 TCGA-77-7465-01 1 234519563 234519563 A G COA6 Nonstop_Mutation p.*126Wext*6 0.49 TCGA-77-7465-01 1 236645657 236645657 A C EDARADD Missense_Mutation p.Q119P 0.48 deleterious(0) possibly_damaging(0.762) TCGA-77-7465-01 1 237806638 237806638 C T RYR2 Silent p.A2411A 0.44 TCGA-77-7465-01 1 240071270 240071270 G - CHRM3 Frame_Shift_Del p.L174Sfs*14 0.18 TCGA-77-7465-01 1 242511543 242511543 G T PLD5 Missense_Mutation p.S64Y 0.19 deleterious(0) probably_damaging(0.956) TCGA-77-7465-01 1 247200914 247200914 G C ZNF670 Missense_Mutation p.P336R 0.13 deleterious(0.01) probably_damaging(0.989) TCGA-77-7465-01 1 247712378 247712378 G T GCSAML 5'Flank 0.29 TCGA-77-7465-01 1 247712477 247712477 C A GCSAML 5'UTR 0.18 TCGA-77-7465-01 1 247921471 247921471 G - OR1C1 Frame_Shift_Del p.Q80Kfs*3 0.37 TCGA-77-7465-01 1 248031145 248031145 A G TRIM58 Splice_Site p.X250_splice 0.20 TCGA-77-7465-01 1 248263469 248263469 C A OR2L13 Silent p.L264L 0.51 TCGA-77-7465-01 1 248263470 248263470 C T OR2L13 Missense_Mutation p.R265C 0.53 deleterious(0.02) benign(0.064) TCGA-77-7465-01 1 248436675 248436675 G T OR2T33 Missense_Mutation p.L148I 0.14 tolerated(0.66) benign(0.013) TCGA-77-7465-01 1 40034593 40034593 C A PABPC4 Nonsense_Mutation p.G253* 0.43 TCGA-77-7465-01 1 44426878 44426878 C T IPO13 Missense_Mutation p.P763L 0.51 tolerated(0.74) benign(0.01) TCGA-77-7465-01 1 55279520 55279520 A C C1orf177 Missense_Mutation p.S266R 0.50 deleterious(0) possibly_damaging(0.629) TCGA-77-7465-01 1 62455893 62455893 C G INADL Missense_Mutation p.L1242V 0.35 deleterious(0) probably_damaging(0.999) TCGA-77-7465-01 1 64033996 64033996 A T EFCAB7 Missense_Mutation p.I505F 0.60 deleterious(0) probably_damaging(0.924) TCGA-77-7465-01 1 74540435 74540435 G T LRRIQ3 Missense_Mutation p.H303N 0.50 tolerated(0.4) benign(0.032) TCGA-77-7465-01 1 86900401 86900401 G C CLCA2 Silent p.V315V 0.60 TCGA-77-7465-01 20 14306539 14306539 G A FLRT3 Silent p.A538A 0.47 TCGA-77-7465-01 20 29956466 29956466 C A DEFB118 Missense_Mutation p.L5M 0.32 deleterious_low_confidence(0.05) unknown(0) TCGA-77-7465-01 20 30386278 30386278 G T TPX2 Missense_Mutation p.A686S 0.11 tolerated(0.26) benign(0.012) TCGA-77-7465-01 20 30753139 30753139 C A TM9SF4 Silent p.G607G 0.06 TCGA-77-7465-01 20 34263040 34263040 C A NFS1 Missense_Mutation p.R292L 0.36 deleterious(0) probably_damaging(0.999) TCGA-77-7465-01 20 35242337 35242337 C G SLA2 Missense_Mutation p.G240R 0.35 deleterious(0) probably_damaging(0.999) TCGA-77-7465-01 20 36859607 36859607 G T KIAA1755 Missense_Mutation p.P623H 0.27 deleterious(0.01) probably_damaging(0.936) TCGA-77-7465-01 20 44417681 44417681 G A WFDC3 Missense_Mutation p.P34S 0.40 deleterious(0) possibly_damaging(0.906) TCGA-77-7465-01 20 62198626 62198626 G A HELZ2 Silent p.D695D 0.37 TCGA-77-7465-01 21 11047500 11047500 G T BAGE2 RNA 0.05 TCGA-77-7465-01 21 35144595 35144595 G T ITSN1 Nonsense_Mutation p.E425* 0.89 TCGA-77-7465-01 21 40186278 40186278 G C ETS2 Missense_Mutation p.G89A 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-77-7465-01 21 40642348 40642348 G A BRWD1 Missense_Mutation p.S419F 0.18 deleterious(0.02) benign(0.117) TCGA-77-7465-01 21 41561059 41561059 C A DSCAM Missense_Mutation p.W821C 0.69 deleterious(0) probably_damaging(0.992) TCGA-77-7465-01 22 18016846 18016846 G A CECR2 Missense_Mutation p.G367E 0.31 deleterious(0) probably_damaging(1) TCGA-77-7465-01 22 20230522 20230522 T A RTN4R Missense_Mutation p.Q45L 0.28 deleterious(0.04) benign(0.018) TCGA-77-7465-01 22 21159263 21159263 C A PI4KA Missense_Mutation p.Q453H 0.28 tolerated(0.12) benign(0.401) TCGA-77-7465-01 22 23077507 23077507 C T IGLV2-18 Missense_Mutation p.T95I 0.32 deleterious_low_confidence(0.03) benign(0.246) TCGA-77-7465-01 22 31266612 31266612 G T OSBP2 Silent p.L350L 0.30 TCGA-77-7465-01 22 32754153 32754153 C T RFPL3 Missense_Mutation p.A32V 0.29 deleterious(0.02) benign(0.042) TCGA-77-7465-01 22 38340474 38340474 G T C22orf23 Missense_Mutation p.L178M 0.33 deleterious(0) probably_damaging(0.999) TCGA-77-7465-01 22 40365518 40365518 T G GRAP2 Missense_Mutation p.V265G 0.33 tolerated(0.17) benign(0.081) TCGA-77-7465-01 22 46787648 46787648 G A CELSR1 Silent p.S2010S 0.49 TCGA-77-7465-01 22 50926773 50926773 T A MIOX Splice_Site p.X136_splice 0.31 TCGA-77-7465-01 22 51065807 51065807 C A ARSA Silent p.P84P 0.32 TCGA-77-7465-01 2 113496526 113496526 C A CKAP2L Silent p.L704L 0.33 TCGA-77-7465-01 2 120677667 120677667 T C PTPN4 Missense_Mutation p.L284S 0.53 tolerated(0.08) probably_damaging(0.972) TCGA-77-7465-01 2 125262070 125262070 G T CNTNAP5 Nonsense_Mutation p.E421* 0.47 TCGA-77-7465-01 2 128381827 128381827 G T MYO7B Missense_Mutation p.V1301F 0.44 deleterious(0.02) possibly_damaging(0.494) TCGA-77-7465-01 2 167145052 167145052 C T SCN9A Missense_Mutation p.M403I 0.46 deleterious(0.03) probably_damaging(0.996) TCGA-77-7465-01 2 172604424 172604424 G C DYNC1I2 3'UTR 0.67 TCGA-77-7465-01 2 176959251 176959252 - G HOXD13 Frame_Shift_Ins p.R277Efs*13 0.31 TCGA-77-7465-01 2 179605178 179605178 A T TTN Missense_Mutation p.L4261H 0.57 TCGA-77-7465-01 2 200245090 200245090 G T SATB2 Silent p.S198S 0.46 TCGA-77-7465-01 2 202131412 202131412 G A CASP8 Missense_Mutation p.R127Q 0.65 tolerated(0.09) benign(0.241) TCGA-77-7465-01 2 21234898 21234898 C T APOB Silent p.L1614L 0.23 TCGA-77-7465-01 2 220087388 220087388 C A ATG9A Missense_Mutation p.Q609H 0.54 tolerated(0.38) benign(0.002) TCGA-77-7465-01 2 223066076 223066076 G C PAX3 Intron 0.65 TCGA-77-7465-01 2 25469976 25469976 G A DNMT3A Nonsense_Mutation p.Q356* 0.28 TCGA-77-7465-01 2 25965530 25965530 A G ASXL2 Silent p.L1226L 0.27 TCGA-77-7465-01 2 27665495 27665495 C T KRTCAP3 Silent p.I26I 0.17 TCGA-77-7465-01 2 54482188 54482188 C G TSPYL6 Missense_Mutation p.Q367H 0.28 deleterious(0.04) benign(0.009) TCGA-77-7465-01 2 5833432 5833432 C A SOX11 Silent p.G193G 0.58 TCGA-77-7465-01 2 60688428 60688428 C A BCL11A Missense_Mutation p.S540I 0.24 tolerated(0.16) benign(0.001) TCGA-77-7465-01 2 69046460 69046460 C G ARHGAP25 Intron 0.25 TCGA-77-7465-01 2 89100798 89100798 T - ANKRD36BP2 RNA 0.24 TCGA-77-7465-01 2 89292134 89292134 G A IGKV1-8 Nonsense_Mutation p.Q47* 0.45 TCGA-77-7465-01 2 90044360 90044360 C T IGKV2D-24 Missense_Mutation p.T94I 0.33 deleterious(0.01) benign(0.225) TCGA-77-7465-01 2 96690299 96690299 G T GPAT2 Missense_Mutation p.H515Q 0.31 tolerated(0.44) possibly_damaging(0.555) TCGA-77-7465-01 3 105400733 105400733 G C CBLB Intron 0.40 TCGA-77-7465-01 3 108776215 108776215 C A MORC1 Missense_Mutation p.G384C 0.38 deleterious(0) probably_damaging(1) TCGA-77-7465-01 3 108818225 108818225 C T MORC1 Missense_Mutation p.E135K 0.38 deleterious(0.02) probably_damaging(1) TCGA-77-7465-01 3 118621494 118621494 C A IGSF11 Missense_Mutation p.G390V 0.32 deleterious(0) possibly_damaging(0.907) TCGA-77-7465-01 3 118648994 118648994 C A IGSF11 Missense_Mutation p.V61F 0.38 tolerated(0.3) probably_damaging(0.996) TCGA-77-7465-01 3 118648995 118648995 C A IGSF11 Missense_Mutation p.M60I 0.37 tolerated(0.07) probably_damaging(0.968) TCGA-77-7465-01 3 119445071 119445071 G T MAATS1 Nonsense_Mutation p.E246* 0.33 TCGA-77-7465-01 3 122287944 122287944 G C DTX3L Missense_Mutation p.E336D 0.38 tolerated(0.26) possibly_damaging(0.652) TCGA-77-7465-01 3 123987857 123987857 G A KALRN Missense_Mutation p.A240T 0.31 deleterious(0.05) possibly_damaging(0.855) TCGA-77-7465-01 3 123987858 123987858 C G KALRN Missense_Mutation p.A240G 0.32 deleterious(0) possibly_damaging(0.897) TCGA-77-7465-01 3 126224841 126224841 T A UROC1 Missense_Mutation p.T206S 0.23 deleterious(0) probably_damaging(0.983) TCGA-77-7465-01 3 132441198 132441198 A T NPHP3 Translation_Start_Site p.M1? 0.30 deleterious(0) probably_damaging(0.996) TCGA-77-7465-01 3 147128760 147128760 C A ZIC1 Nonsense_Mutation p.Y287* 0.27 TCGA-77-7465-01 3 147131153 147131153 T A ZIC1 Missense_Mutation p.S387T 0.34 tolerated(0.24) benign(0) TCGA-77-7465-01 3 151156247 151156247 T C IGSF10 Silent p.R2034R 0.35 TCGA-77-7465-01 3 157818046 157818046 T C SHOX2 Missense_Mutation p.K228E 0.31 deleterious(0.02) probably_damaging(0.917) TCGA-77-7465-01 3 169700566 169700566 A C SEC62 Missense_Mutation p.K108T 0.27 tolerated(0.09) possibly_damaging(0.728) TCGA-77-7465-01 3 179481817 179481817 G T USP13 Missense_Mutation p.G707V 0.22 deleterious(0.02) benign(0.25) TCGA-77-7465-01 3 185332504 185332504 G C SENP2 Silent p.T362T 0.17 TCGA-77-7465-01 3 194062676 194062676 G A CPN2 Silent p.A252A 0.31 TCGA-77-7465-01 3 195595468 195595468 C G TNK2 Silent p.S630S 0.28 TCGA-77-7465-01 3 38017313 38017313 T A CTDSPL Silent p.L211L 0.45 TCGA-77-7465-01 3 51430264 51430264 G C RBM15B Missense_Mutation p.L478F 0.48 deleterious(0) possibly_damaging(0.578) TCGA-77-7465-01 3 62423823 62423823 G T CADPS Missense_Mutation p.R1245S 0.43 tolerated(0.07) benign(0.01) TCGA-77-7465-01 3 62739388 62739388 C T CADPS Missense_Mutation p.D206N 0.52 deleterious(0) possibly_damaging(0.555) TCGA-77-7465-01 3 86115813 86115813 A T CADM2 Splice_Site p.X399_splice 0.45 TCGA-77-7465-01 3 89390945 89390945 C G EPHA3 Missense_Mutation p.N337K 0.26 tolerated(0.09) probably_damaging(0.999) TCGA-77-7465-01 3 9594142 9594142 C A LHFPL4 Missense_Mutation p.E74D 0.45 tolerated(0.28) benign(0.029) TCGA-77-7465-01 3 97868378 97868378 G C OR5H14 Missense_Mutation p.W50S 0.35 tolerated(0.13) benign(0.058) TCGA-77-7465-01 3 98240529 98240529 C G CLDND1 Missense_Mutation p.E7Q 0.10 tolerated_low_confidence(0.06) benign(0.005) TCGA-77-7465-01 3 98251146 98251146 T A GPR15 Missense_Mutation p.V90E 0.21 deleterious(0.01) probably_damaging(0.943) TCGA-77-7465-01 4 107847088 107847088 C A DKK2 Missense_Mutation p.D81Y 0.57 deleterious(0) probably_damaging(0.999) TCGA-77-7465-01 4 119203247 119203247 G C PRSS12 Missense_Mutation p.D824E 0.46 deleterious(0) probably_damaging(0.995) TCGA-77-7465-01 4 125599880 125599880 A T ANKRD50 Silent p.L231L 0.50 TCGA-77-7465-01 4 144797983 144797983 C G GYPE Silent p.A54A 0.50 TCGA-77-7465-01 4 156775379 156775379 A T ASIC5 Silent p.T145T 0.54 TCGA-77-7465-01 4 164394773 164394773 C A TKTL2 Missense_Mutation p.Q38H 0.48 tolerated(1) benign(0.001) TCGA-77-7465-01 4 176622759 176622759 C A GPM6A Missense_Mutation p.R66I 0.52 deleterious(0) possibly_damaging(0.908) TCGA-77-7465-01 4 1806119 1806119 G C FGFR3 Missense_Mutation p.G382R 0.55 tolerated(0.14) probably_damaging(0.925) TCGA-77-7465-01 4 186336401 186336401 G A UFSP2 Missense_Mutation p.P198S 0.69 tolerated(0.09) benign(0.1) TCGA-77-7465-01 4 26638877 26638877 C A TBC1D19 Nonsense_Mutation p.C113* 0.58 TCGA-77-7465-01 4 3432158 3432158 C T RGS12 Missense_Mutation p.A1197V 0.64 tolerated(0.2) possibly_damaging(0.529) TCGA-77-7465-01 4 39435906 39435906 G C KLB Missense_Mutation p.G301A 0.57 tolerated(0.2) probably_damaging(1) TCGA-77-7465-01 4 657654 657655 - T PDE6B Frame_Shift_Ins p.K674Qfs*12 0.29 TCGA-77-7465-01 4 81791251 81791251 T A C4orf22 Silent p.T163T 0.60 TCGA-77-7465-01 5 115822467 115822467 T C SEMA6A Missense_Mutation p.T314A 0.53 deleterious(0.01) probably_damaging(0.997) TCGA-77-7465-01 5 140480621 140480621 T G PCDHB3 Missense_Mutation p.S130A 0.50 tolerated_low_confidence(0.23) benign(0.002) TCGA-77-7465-01 5 141242829 141242829 G T PCDH1 Missense_Mutation p.R1023S 0.64 tolerated(0.1) benign(0) TCGA-77-7465-01 5 156592666 156592666 C T FAM71B Missense_Mutation p.V172I 0.54 tolerated(0.63) benign(0.045) TCGA-77-7465-01 5 156940453 156940453 A T ADAM19 Missense_Mutation p.Y243N 0.55 deleterious(0) possibly_damaging(0.845) TCGA-77-7465-01 5 167857223 167857223 G A WWC1 Silent p.Q694Q 0.33 TCGA-77-7465-01 5 173534375 173534375 C A NSG2 Missense_Mutation p.S128Y 0.54 tolerated(0.11) possibly_damaging(0.82) TCGA-77-7465-01 5 177632881 177632881 A T HNRNPAB Missense_Mutation p.K83I 0.19 deleterious(0) probably_damaging(0.984) TCGA-77-7465-01 5 178506828 178506828 G T ZNF354C Missense_Mutation p.E465D 0.65 deleterious(0) probably_damaging(0.989) TCGA-77-7465-01 5 19747286 19747286 A C CDH18 Silent p.G96G 0.36 TCGA-77-7465-01 5 2749884 2749884 C T IRX2 Silent p.A89A 0.21 TCGA-77-7465-01 5 32230290 32230290 T C MTMR12 Missense_Mutation p.Y613C 0.34 deleterious(0) probably_damaging(1) TCGA-77-7465-01 5 40834622 40834622 C G RPL37 Missense_Mutation p.Q30H 0.06 deleterious(0.01) possibly_damaging(0.451) TCGA-77-7465-01 5 45262118 45262118 G T HCN1 Missense_Mutation p.P860T 0.36 tolerated_low_confidence(0.64) benign(0) TCGA-77-7465-01 5 50683330 50683330 C T ISL1 Silent p.Y75Y 0.48 TCGA-77-7465-01 5 76129104 76129104 G T F2RL1 Silent p.T224T 0.60 TCGA-77-7465-01 5 89933541 89933541 G A GPR98 Splice_Site p.X673_splice 0.47 TCGA-77-7465-01 6 101847196 101847196 C T GRIK2 Missense_Mutation p.R15C 0.32 tolerated(0.22) benign(0) TCGA-77-7465-01 6 105233002 105233002 T G HACE1 Missense_Mutation p.T423P 0.34 tolerated(0.21) benign(0) TCGA-77-7465-01 6 116836836 116836836 C A FAM26E Missense_Mutation p.S205Y 0.35 deleterious(0) probably_damaging(1) TCGA-77-7465-01 6 117053494 117053494 G T KPNA5 3'UTR 0.37 TCGA-77-7465-01 6 117113683 117113683 G T GPRC6A Silent p.I801I 0.41 TCGA-77-7465-01 6 127796927 127796927 G T SOGA3 Silent p.P748P 0.31 TCGA-77-7465-01 6 132032015 132032015 G A CTAGE9 Missense_Mutation p.A48V 0.29 tolerated(0.1) benign(0.049) TCGA-77-7465-01 6 132695884 132695884 T G MOXD1 Missense_Mutation p.K99N 0.23 tolerated(0.18) benign(0.331) TCGA-77-7465-01 6 133076988 133076988 G T VNN2 Nonsense_Mutation p.Y177* 0.36 TCGA-77-7465-01 6 136476781 136476781 C A PDE7B Missense_Mutation p.T199K 0.35 tolerated(0.07) possibly_damaging(0.887) TCGA-77-7465-01 6 151152115 151152115 G A PLEKHG1 Missense_Mutation p.G623E 0.38 tolerated(0.68) benign(0.021) TCGA-77-7465-01 6 152772221 152772221 C A SYNE1 Missense_Mutation p.M1049I 0.33 benign(0.001) TCGA-77-7465-01 6 152782766 152782766 G T SYNE1 Missense_Mutation p.A787E 0.33 benign(0.217) TCGA-77-7465-01 6 152783943 152783943 G A SYNE1 Missense_Mutation p.A727V 0.21 benign(0.094) TCGA-77-7465-01 6 158565443 158565443 T C SERAC1 Missense_Mutation p.Y166C 0.28 tolerated(0.07) probably_damaging(0.986) TCGA-77-7465-01 6 167550186 167550186 C A CCR6 Silent p.L156L 0.42 TCGA-77-7465-01 6 167794693 167794693 C G TCP10 Missense_Mutation p.E65D 0.23 tolerated(0.31) possibly_damaging(0.552) TCGA-77-7465-01 6 24865613 24865613 C T FAM65B Silent p.K160K 0.26 TCGA-77-7465-01 6 24873962 24873962 T C FAM65B Missense_Mutation p.H56R 0.34 deleterious(0.01) benign(0.307) TCGA-77-7465-01 6 25488737 25488737 G T LRRC16A Missense_Mutation p.S330I 0.48 tolerated(0.08) possibly_damaging(0.786) TCGA-77-7465-01 6 26509368 26509368 T A BTN1A1 Missense_Mutation p.L516Q 0.21 deleterious(0) probably_damaging(0.982) TCGA-77-7465-01 6 28053493 28053493 A T ZNF165 Nonsense_Mutation p.K79* 0.48 TCGA-77-7465-01 6 29556018 29556018 C A OR2H2 Silent p.I99I 0.37 TCGA-77-7465-01 6 31867747 31867747 C T ZBTB12 Missense_Mutation p.V446M 0.39 tolerated(0.07) possibly_damaging(0.623) TCGA-77-7465-01 6 32053673 32053673 G A TNXB Missense_Mutation p.P1001L 0.25 benign(0.021) TCGA-77-7465-01 6 33382526 33382526 G A PHF1 Silent p.K323K 0.34 TCGA-77-7465-01 6 35387920 35387920 C G PPARD Silent p.S49S 0.28 TCGA-77-7465-01 6 40400795 40400795 C T LRFN2 Missense_Mutation p.A20T 0.37 tolerated(0.37) benign(0.029) TCGA-77-7465-01 6 49928157 49928157 T C DEFB114 Missense_Mutation p.T20A 0.37 tolerated_low_confidence(0.07) possibly_damaging(0.636) TCGA-77-7465-01 6 56035894 56035894 C G COL21A1 Missense_Mutation p.A225P 0.35 deleterious(0.02) probably_damaging(0.918) TCGA-77-7465-01 6 656154 656154 A T HUS1B Nonsense_Mutation p.L264* 0.40 TCGA-77-7465-01 6 72984087 72984087 C A RIMS1 Missense_Mutation p.P1145H 0.27 deleterious(0) probably_damaging(0.998) TCGA-77-7465-01 6 90327724 90327724 G T ANKRD6 Missense_Mutation p.A256S 0.30 tolerated(0.05) probably_damaging(0.991) TCGA-77-7465-01 7 100676585 100676585 A G MUC17 Missense_Mutation p.T630A 0.34 benign(0.001) TCGA-77-7465-01 7 100839285 100839285 A T MOGAT3 Missense_Mutation p.F323Y 0.38 deleterious(0.01) probably_damaging(0.995) TCGA-77-7465-01 7 101063374 101063374 T A COL26A1 Missense_Mutation p.L92H 0.32 deleterious(0) probably_damaging(0.985) TCGA-77-7465-01 7 11091381 11091381 C G PHF14 Missense_Mutation p.P819A 0.29 tolerated(0.06) benign(0.182) TCGA-77-7465-01 7 111379226 111379226 G T DOCK4 Nonsense_Mutation p.C1723* 0.55 TCGA-77-7465-01 7 143632419 143632419 T G OR2F2 Missense_Mutation p.L32V 0.54 deleterious(0.02) possibly_damaging(0.682) TCGA-77-7465-01 7 15601354 15601354 A G AGMO Silent p.Y39Y 0.28 TCGA-77-7465-01 7 158334202 158334202 C T PTPRN2 Intron 0.60 TCGA-77-7465-01 7 28996903 28996903 G T AC005013.5 5'Flank 0.29 TCGA-77-7465-01 7 31829692 31829692 G T PDE1C Intron 0.31 TCGA-77-7465-01 7 37960441 37960441 G A EPDR1 5'UTR 0.43 TCGA-77-7465-01 7 4281517 4281517 A G SDK1 Missense_Mutation p.S2075G 0.34 tolerated(0.28) benign(0.002) TCGA-77-7465-01 7 44687260 44687260 G T OGDH Missense_Mutation p.R140L 0.28 deleterious(0.02) benign(0.095) TCGA-77-7465-01 7 6006679 6006679 A G RSPH10B Silent p.S23S 0.74 TCGA-77-7465-01 7 77756539 77756539 G T MAGI2 Missense_Mutation p.P1133H 0.54 deleterious(0) possibly_damaging(0.905) TCGA-77-7465-01 7 8009028 8009028 C T GLCCI1 Missense_Mutation p.P16L 0.23 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-77-7465-01 7 97863001 97863001 C T TECPR1 Silent p.R468R 0.43 TCGA-77-7465-01 7 99056780 99056780 G T ATP5J2 Nonsense_Mutation p.Y82* 0.42 TCGA-77-7465-01 8 108970380 108970380 T C RSPO2 Missense_Mutation p.K182E 0.25 tolerated(0.46) probably_damaging(0.925) TCGA-77-7465-01 8 113249438 113249439 - T CSMD3 Frame_Shift_Ins p.N3536Kfs*11 0.14 TCGA-77-7465-01 8 113277805 113277805 C A CSMD3 Missense_Mutation p.D3175Y 0.21 deleterious(0) probably_damaging(0.979) TCGA-77-7465-01 8 116616783 116616783 C A TRPS1 Missense_Mutation p.Q471H 0.31 tolerated_low_confidence(0.09) benign(0.014) TCGA-77-7465-01 8 120756592 120756592 A T TAF2 Silent p.T1050T 0.42 TCGA-77-7465-01 8 122626930 122626930 G A HAS2 Nonsense_Mutation p.R360* 0.47 TCGA-77-7465-01 8 122641057 122641057 A G HAS2 Missense_Mutation p.V175A 0.32 deleterious(0.01) possibly_damaging(0.849) TCGA-77-7465-01 8 13162712 13162712 C G DLC1 Intron 0.38 TCGA-77-7465-01 8 134232910 134232910 T C WISP1 Missense_Mutation p.C146R 0.29 deleterious(0) possibly_damaging(0.904) TCGA-77-7465-01 8 139791771 139791771 G T COL22A1 Missense_Mutation p.P562Q 0.44 unknown(0) TCGA-77-7465-01 8 19277898 19277898 T C CSGALNACT1 Missense_Mutation p.Y362C 0.52 deleterious(0.04) benign(0.123) TCGA-77-7465-01 8 21883227 21883227 G A NPM2 Missense_Mutation p.D72N 0.55 tolerated(0.09) benign(0.22) TCGA-77-7465-01 8 25261116 25261116 A G DOCK5 Missense_Mutation p.I1657V 0.52 tolerated(1) benign(0) TCGA-77-7465-01 8 25744382 25744382 C T EBF2 Missense_Mutation p.A300T 0.39 deleterious(0.03) probably_damaging(0.995) TCGA-77-7465-01 8 27099950 27099950 C A STMN4 Missense_Mutation p.A25S 0.46 tolerated(0.65) benign(0.006) TCGA-77-7465-01 8 3205623 3205623 G C CSMD1 Missense_Mutation p.S1122C 0.62 probably_damaging(0.998) TCGA-77-7465-01 8 40554922 40554922 T A ZMAT4 Splice_Site p.X65_splice 0.41 TCGA-77-7465-01 8 92972606 92972606 T C RUNX1T1 Missense_Mutation p.Q571R 0.21 tolerated(0.54) benign(0.044) TCGA-77-7465-01 9 121976094 121976094 C G BRINP1 Intron 0.28 TCGA-77-7465-01 9 123624901 123624901 G C PHF19 Silent p.S365S 0.36 TCGA-77-7465-01 9 123880744 123880744 A G CNTRL Missense_Mutation p.I526V 0.28 benign(0.156) TCGA-77-7465-01 9 129595235 129595235 T G ZBTB43 Missense_Mutation p.N149K 0.41 tolerated(0.24) benign(0.034) TCGA-77-7465-01 9 130269622 130269622 C A FAM129B Silent p.L581L 0.40 TCGA-77-7465-01 9 134011340 134011340 G A NUP214 Missense_Mutation p.A318T 0.28 unknown(0) TCGA-77-7465-01 9 134525584 134525584 C A RAPGEF1 Missense_Mutation p.D84Y 0.32 deleterious_low_confidence(0) benign(0.361) TCGA-77-7465-01 9 138670555 138670555 T C KCNT1 Silent p.C872C 0.35 TCGA-77-7465-01 9 139565087 139565087 C T EGFL7 Intron 0.30 TCGA-77-7465-01 9 139879173 139879173 C A LCNL1 Missense_Mutation p.L69M 0.41 tolerated(0.22) possibly_damaging(0.908) TCGA-77-7465-01 9 140062346 140062346 G T GRIN1 3'UTR 0.58 TCGA-77-7465-01 9 140127759 140127759 G C SLC34A3 Missense_Mutation p.S220T 0.46 tolerated(1) benign(0.035) TCGA-77-7465-01 9 19102735 19102735 G T HAUS6 5'UTR 0.15 TCGA-77-7465-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.61 TCGA-77-7465-01 9 35091576 35091576 C A PIGO Missense_Mutation p.G770W 0.61 deleterious(0.02) possibly_damaging(0.566) TCGA-77-7465-01 9 43627897 43627897 C G SPATA31A6 Missense_Mutation p.V264L 0.43 tolerated(0.31) benign(0.107) TCGA-77-7465-01 9 84532773 84532773 C A SPATA31D5P RNA 0.19 TCGA-77-7465-01 9 90219927 90219927 G T DAPK1 Missense_Mutation p.A41S 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-77-7465-01 9 90501596 90501596 G T SPATA31E1 Nonsense_Mutation p.E732* 0.46 TCGA-77-7465-01 9 91262358 91262358 C A RP13-60M5.2 RNA 0.31 TCGA-77-7465-01 9 95608386 95608386 C T ZNF484 3'UTR 0.60 TCGA-77-7465-01 9 96082660 96082660 G T WNK2 3'Flank 0.46 TCGA-77-7465-01 X 103045558 103045558 C A PLP1 3'UTR 0.61 TCGA-77-7465-01 X 110435837 110435837 A G PAK3 Missense_Mutation p.Y364C 0.85 deleterious(0) probably_damaging(1) TCGA-77-7465-01 X 122774409 122774409 G C THOC2 Missense_Mutation p.P576A 0.76 deleterious(0) probably_damaging(1) TCGA-77-7465-01 X 12837716 12837716 G A PRPS2 Silent p.L210L 0.75 TCGA-77-7465-01 X 130678333 130678333 C T OR13H1 Nonsense_Mutation p.R96* 0.66 TCGA-77-7465-01 X 139006321 139006321 G T MIR505 RNA 0.76 TCGA-77-7465-01 X 50163495 50163495 G T DGKK RNA 0.66 TCGA-77-7465-01 X 54335718 54335718 T C WNK3 Silent p.P247P 0.79 TCGA-77-7465-01 X 55116958 55116958 A C PAGE2 Missense_Mutation p.K36N 0.67 deleterious(0.02) probably_damaging(0.999) TCGA-77-7465-01 X 70466270 70466270 A C ZMYM3 Missense_Mutation p.C835W 0.73 deleterious(0) probably_damaging(0.993) TCGA-77-7465-01 X 7811686 7811686 C A VCX Missense_Mutation p.L84I 0.42 tolerated(0.09) unknown(0) TCGA-77-7465-01 X 89177273 89177273 G A TGIF2LX Silent p.K63K 0.65 TCGA-77-8007-01 10 105420856 105420856 G C SH3PXD2A Silent p.A163A 0.08 TCGA-77-8007-01 10 134012399 134012399 G T DPYSL4 Missense_Mutation p.Q245H 0.08 deleterious(0.04) probably_damaging(0.991) TCGA-77-8007-01 10 56106245 56106245 C T PCDH15 Splice_Site p.X159_splice 0.10 TCGA-77-8007-01 10 64967566 64967566 T A JMJD1C Missense_Mutation p.E1288V 0.10 tolerated(0.31) benign(0.014) TCGA-77-8007-01 10 866769 866769 A T LARP4B Missense_Mutation p.Y501N 0.06 tolerated(0.28) possibly_damaging(0.646) TCGA-77-8007-01 11 113650538 113650538 A G CLDN25 Silent p.A7A 0.24 TCGA-77-8007-01 11 119183299 119183299 G C MCAM Missense_Mutation p.R267G 0.17 tolerated(0.34) possibly_damaging(0.793) TCGA-77-8007-01 11 123513328 123513328 G A SCN3B Missense_Mutation p.R91C 0.10 deleterious(0) probably_damaging(1) TCGA-77-8007-01 11 123601585 123601585 G A ZNF202 Silent p.A4A 0.26 TCGA-77-8007-01 11 123847503 123847503 G T OR10S1 Missense_Mutation p.P299Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-77-8007-01 11 123848054 123848054 A T OR10S1 Silent p.L115L 0.24 TCGA-77-8007-01 11 17483217 17483217 G T ABCC8 Silent p.I245I 0.04 TCGA-77-8007-01 11 5020582 5020582 C G OR51L1 Missense_Mutation p.R124G 0.08 deleterious(0) benign(0.413) TCGA-77-8007-01 11 57004423 57004423 C T APLNR Missense_Mutation p.C19Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-77-8007-01 11 78369175 78369175 C A TENM4 Missense_Mutation p.E2746D 0.21 tolerated(0.22) benign(0.005) TCGA-77-8007-01 11 89073231 89073231 C A NOX4 Missense_Mutation p.K482N 0.10 deleterious(0) probably_damaging(0.996) TCGA-77-8007-01 11 94801066 94801066 C G SRSF8 Missense_Mutation p.R226G 0.05 tolerated_low_confidence(0.24) unknown(0) TCGA-77-8007-01 12 113836590 113836590 G C SDS Missense_Mutation p.I85M 0.22 deleterious(0) probably_damaging(0.946) TCGA-77-8007-01 12 125834025 125834025 G A TMEM132B Missense_Mutation p.S27N 0.14 tolerated(0.31) possibly_damaging(0.804) TCGA-77-8007-01 12 125834026 125834026 C T TMEM132B Silent p.S27S 0.14 TCGA-77-8007-01 12 14976598 14976599 - GACA C12orf60 Frame_Shift_Ins p.K245Rfs*24 0.11 TCGA-77-8007-01 12 40697870 40697870 G A LRRK2 Silent p.L1237L 0.12 TCGA-77-8007-01 12 46245453 46245453 G - ARID2 Frame_Shift_Del p.A1183Hfs*5 0.26 TCGA-77-8007-01 12 57180957 57180957 A T HSD17B6 Missense_Mutation p.N262I 0.09 tolerated(0.15) benign(0.045) TCGA-77-8007-01 12 59282713 59282713 C G LRIG3 Missense_Mutation p.D231H 0.10 tolerated(0.06) probably_damaging(0.948) TCGA-77-8007-01 12 72962418 72962418 T C TRHDE Missense_Mutation p.W660R 0.28 deleterious(0) probably_damaging(0.937) TCGA-77-8007-01 13 23909544 23909544 G T SACS Nonsense_Mutation p.S2824* 0.15 TCGA-77-8007-01 13 38158955 38158955 C T POSTN Missense_Mutation p.D336N 0.07 deleterious(0.04) possibly_damaging(0.768) TCGA-77-8007-01 13 99040700 99040700 C T FARP1 Missense_Mutation p.R275C 0.16 deleterious(0) probably_damaging(0.998) TCGA-77-8007-01 14 107218829 107218829 C A IGHV3-74 Missense_Mutation p.W66C 0.06 deleterious_low_confidence(0.02) benign(0.296) TCGA-77-8007-01 14 24534202 24534202 T A LRRC16B Missense_Mutation p.L1039H 0.09 tolerated(0.09) benign(0.02) TCGA-77-8007-01 14 68228131 68228131 G A ZFYVE26 Silent p.Y2180Y 0.15 TCGA-77-8007-01 14 76259262 76259262 C T TTLL5 Missense_Mutation p.S997L 0.13 tolerated(0.5) benign(0.002) TCGA-77-8007-01 14 77844554 77844554 C A SAMD15 Missense_Mutation p.L265M 0.07 deleterious(0.04) benign(0.213) TCGA-77-8007-01 14 92174488 92174488 G C CATSPERB Missense_Mutation p.R155G 0.18 deleterious(0) probably_damaging(0.999) TCGA-77-8007-01 15 22382513 22382513 T C OR4N4 Missense_Mutation p.L14P 0.02 deleterious(0) probably_damaging(0.954) TCGA-77-8007-01 15 34648837 34648837 T A NUTM1 Missense_Mutation p.D848E 0.08 tolerated(0.66) benign(0.001) TCGA-77-8007-01 15 40565564 40565564 T G PAK6 Missense_Mutation p.I503S 0.05 deleterious(0) probably_damaging(1) TCGA-77-8007-01 15 51799387 51799387 T C DMXL2 Missense_Mutation p.N903S 0.11 tolerated(0.31) benign(0.003) TCGA-77-8007-01 15 57921899 57921899 G A GCOM1 Splice_Site p.X176_splice 0.10 TCGA-77-8007-01 15 99512776 99512776 G A PGPEP1L Silent p.P83P 0.10 TCGA-77-8007-01 16 24966052 24966052 C A ARHGAP17 Splice_Site p.X242_splice 0.13 TCGA-77-8007-01 16 3070387 3070387 A G TNFRSF12A 5'UTR 0.14 TCGA-77-8007-01 16 3544849 3544849 G T C16orf90 Silent p.P25P 0.17 TCGA-77-8007-01 16 72138026 72138026 G A DHX38 Missense_Mutation p.R669Q 0.22 deleterious(0) probably_damaging(0.994) TCGA-77-8007-01 16 88967964 88967964 C A CBFA2T3 Silent p.P84P 0.16 TCGA-77-8007-01 17 4463786 4463786 G A GGT6 Nonsense_Mutation p.Q11* 0.29 TCGA-77-8007-01 17 7577099 7577099 C T TP53 Missense_Mutation p.R280K 0.27 deleterious(0.04) possibly_damaging(0.83) TCGA-77-8007-01 18 34297938 34297938 G T FHOD3 Missense_Mutation p.G718W 0.09 tolerated(0.08) possibly_damaging(0.575) TCGA-77-8007-01 18 3452185 3452185 A C TGIF1 Missense_Mutation p.T70P 0.21 deleterious_low_confidence(0) benign(0.001) TCGA-77-8007-01 18 59899572 59899572 G A KIAA1468 Missense_Mutation p.R511H 0.15 tolerated(0.2) benign(0.029) TCGA-77-8007-01 18 74580797 74580797 A G ZNF236 Missense_Mutation p.M172V 0.13 tolerated(0.08) benign(0.012) TCGA-77-8007-01 19 1089535 1089535 G A POLR2E Missense_Mutation p.R195W 0.05 deleterious(0) probably_damaging(0.999) TCGA-77-8007-01 19 42582903 42582903 G A ZNF574 Missense_Mutation p.V49M 0.06 tolerated(0.08) possibly_damaging(0.868) TCGA-77-8007-01 19 4817780 4817780 C A TICAM1 Missense_Mutation p.A204S 0.09 tolerated(0.06) benign(0.146) TCGA-77-8007-01 19 50962262 50962262 A T MYBPC2 Missense_Mutation p.Q865L 0.18 deleterious(0.01) probably_damaging(0.993) TCGA-77-8007-01 19 51767277 51767277 G T SIGLECL1 5'UTR 0.05 TCGA-77-8007-01 19 52658279 52658279 C G ZNF836 Missense_Mutation p.G886A 0.09 deleterious(0.01) benign(0.117) TCGA-77-8007-01 19 53740887 53740887 G T ZNF677 Missense_Mutation p.H365N 0.20 deleterious(0) probably_damaging(0.996) TCGA-77-8007-01 1 152648599 152648599 C A LCE2C Nonsense_Mutation p.C36* 0.09 TCGA-77-8007-01 1 152785166 152785166 C T LCE1B Missense_Mutation p.R82C 0.16 tolerated_low_confidence(0.14) unknown(0) TCGA-77-8007-01 1 160165753 160165753 G A CASQ1 Missense_Mutation p.V240M 0.17 deleterious(0.02) benign(0.261) TCGA-77-8007-01 1 176525389 176525389 C G PAPPA2 5'UTR 0.27 TCGA-77-8007-01 1 196654293 196654293 G C CFH Missense_Mutation p.G297A 0.05 deleterious(0) probably_damaging(0.989) TCGA-77-8007-01 1 20417143 20417143 C A PLA2G5 Nonsense_Mutation p.Y125* 0.09 TCGA-77-8007-01 1 230845903 230845903 G T AGT Missense_Mutation p.P232T 0.05 tolerated(0.11) possibly_damaging(0.861) TCGA-77-8007-01 1 235918867 235918867 G A LYST Silent p.A2380A 0.06 TCGA-77-8007-01 1 248685382 248685382 C T OR2G6 Silent p.A145A 0.17 TCGA-77-8007-01 1 36026502 36026502 G A NCDN Silent p.P250P 0.07 TCGA-77-8007-01 1 41236618 41236618 A G NFYC 3'UTR 0.25 TCGA-77-8007-01 1 54301194 54301194 G C NDC1 Missense_Mutation p.H53D 0.12 deleterious(0) probably_damaging(0.988) TCGA-77-8007-01 1 74507042 74507042 G T LRRIQ3 Missense_Mutation p.R525S 0.10 deleterious(0.02) possibly_damaging(0.775) TCGA-77-8007-01 1 82302742 82302742 G T LPHN2 Missense_Mutation p.G25C 0.09 deleterious(0.02) benign(0.191) TCGA-77-8007-01 20 42788395 42788395 G A JPH2 Silent p.N344N 0.17 TCGA-77-8007-01 21 32624181 32624181 C A TIAM1 Missense_Mutation p.A430S 0.13 tolerated(0.27) benign(0.007) TCGA-77-8007-01 2 124979315 124979315 C T CNTNAP5 Missense_Mutation p.S39F 0.26 deleterious(0) possibly_damaging(0.736) TCGA-77-8007-01 2 16082777 16082777 G A MYCN Silent p.V197V 0.14 TCGA-77-8007-01 2 165947360 165947360 G A SCN3A Missense_Mutation p.A1768V 0.17 deleterious(0.03) probably_damaging(0.998) TCGA-77-8007-01 2 219692318 219692318 G T PRKAG3 Silent p.V285V 0.10 TCGA-77-8007-01 2 238725887 238725887 A G RBM44 Missense_Mutation p.N110D 0.24 tolerated(0.09) possibly_damaging(0.897) TCGA-77-8007-01 2 240111720 240111720 C T HDAC4 Missense_Mutation p.D50N 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-77-8007-01 2 42931405 42931405 C T MTA3 Missense_Mutation p.T366I 0.14 tolerated(0.45) benign(0.146) TCGA-77-8007-01 2 96686964 96686964 G A GPAT2 3'Flank 0.15 TCGA-77-8007-01 3 183472064 183472064 G T YEATS2 Missense_Mutation p.C434F 0.05 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-77-8007-01 3 53259749 53259749 C A TKT 3'UTR 0.05 TCGA-77-8007-01 3 93772057 93772057 C T ARL13B Silent p.L413L 0.20 TCGA-77-8007-01 4 55962431 55962431 A G KDR Missense_Mutation p.V898A 0.20 deleterious(0) probably_damaging(0.999) TCGA-77-8007-01 5 13729631 13729631 G A DNAH5 Missense_Mutation p.P3934S 0.33 possibly_damaging(0.876) TCGA-77-8007-01 5 149212384 149212384 C T PPARGC1B Missense_Mutation p.P250S 0.43 tolerated(0.86) benign(0.004) TCGA-77-8007-01 5 156770051 156770051 G A FNDC9 Missense_Mutation p.A165V 0.08 tolerated(0.34) benign(0.004) TCGA-77-8007-01 5 161128722 161128722 G T GABRA6 Silent p.V435V 0.11 TCGA-77-8007-01 5 26886121 26886121 C A CDH9 Silent p.V528V 0.19 TCGA-77-8007-01 5 50687250 50687250 T A ISL1 Missense_Mutation p.I303K 0.18 deleterious(0.02) benign(0.094) TCGA-77-8007-01 5 76250007 76250007 T C CRHBP Missense_Mutation p.L110P 0.19 deleterious(0.01) probably_damaging(0.984) TCGA-77-8007-01 5 86681171 86681171 C T RASA1 Nonsense_Mutation p.Q938* 0.16 TCGA-77-8007-01 6 155451046 155451046 C T TIAM2 Missense_Mutation p.P230L 0.05 deleterious_low_confidence(0) benign(0.097) TCGA-77-8007-01 6 155451158 155451158 C A TIAM2 Missense_Mutation p.F267L 0.06 tolerated_low_confidence(0.63) benign(0.001) TCGA-77-8007-01 6 155451159 155451159 C T TIAM2 Silent p.L268L 0.06 TCGA-77-8007-01 6 155451356 155451356 C G TIAM2 Silent p.V333V 0.05 TCGA-77-8007-01 6 38889181 38889181 G T DNAH8 Missense_Mutation p.A3304S 0.16 probably_damaging(1) TCGA-77-8007-01 6 4735024 4735024 C A CDYL Silent p.P44P 0.12 TCGA-77-8007-01 7 142919971 142919971 C A TAS2R40 Missense_Mutation p.T267K 0.12 deleterious(0) benign(0.152) TCGA-77-8007-01 7 156759696 156759696 G A NOM1 Silent p.L736L 0.06 TCGA-77-8007-01 7 20782659 20782659 C T ABCB5 Missense_Mutation p.L1062F 0.16 deleterious(0) probably_damaging(1) TCGA-77-8007-01 7 45018567 45018567 G A MYO1G 5'UTR 0.06 TCGA-77-8007-01 7 76825959 76825959 A T FGL2 Missense_Mutation p.F319L 0.07 deleterious(0) probably_damaging(1) TCGA-77-8007-01 7 87476380 87476380 T C SLC25A40 Missense_Mutation p.K172R 0.08 tolerated(0.94) benign(0.078) TCGA-77-8007-01 8 110422177 110422177 T A PKHD1L1 Nonsense_Mutation p.Y685* 0.29 TCGA-77-8007-01 8 126094674 126094674 T C KIAA0196 Missense_Mutation p.Q123R 0.27 deleterious(0.01) probably_damaging(1) TCGA-77-8007-01 8 128428462 128428462 C T POU5F1B Silent p.V117V 0.24 TCGA-77-8007-01 8 143866840 143866840 C G LY6D Missense_Mutation p.D62H 0.32 deleterious(0.01) possibly_damaging(0.79) TCGA-77-8007-01 8 24254957 24254957 C A ADAMDEC1 Silent p.L205L 0.05 TCGA-77-8007-01 8 24813286 24813286 G T CTD-2168K21.2 5'Flank 0.22 TCGA-77-8007-01 8 27764729 27764729 G A SCARA5 Silent p.P344P 0.08 TCGA-77-8007-01 8 42591699 42591699 G A CHRNB3 Missense_Mutation p.V439I 0.04 tolerated(0.89) benign(0.045) TCGA-77-8007-01 9 125437783 125437783 C A OR1L3 Silent p.A125A 0.11 TCGA-77-8007-01 9 20764867 20764867 G T FOCAD Splice_Site p.X165_splice 0.14 TCGA-77-8007-01 9 3263006 3263006 C A RFX3 Missense_Mutation p.V512L 0.04 deleterious(0) probably_damaging(0.947) TCGA-77-8007-01 X 103497492 103497492 C A ESX1 Missense_Mutation p.R175L 0.09 deleterious(0.01) benign(0.249) TCGA-77-8007-01 X 152914710 152914710 G T DUSP9 Nonsense_Mutation p.E133* 0.15 TCGA-77-8007-01 X 75651064 75651064 C A MAGEE1 Missense_Mutation p.A914D 0.26 deleterious(0) probably_damaging(0.955) TCGA-77-8008-01 10 102048094 102048094 C A PKD2L1 3'UTR 0.16 TCGA-77-8008-01 10 117075058 117075058 G A ATRNL1 Missense_Mutation p.G950E 0.13 tolerated(0.26) possibly_damaging(0.572) TCGA-77-8008-01 10 118202677 118202677 C A PNLIPRP3 Missense_Mutation p.D105E 0.11 deleterious(0.04) benign(0.116) TCGA-77-8008-01 10 120879923 120879923 G T FAM45A Silent p.V184V 0.13 TCGA-77-8008-01 10 134059420 134059420 T G STK32C Missense_Mutation p.K101T 0.13 deleterious(0) possibly_damaging(0.824) TCGA-77-8008-01 10 21120405 21120405 G T NEBL Missense_Mutation p.S519R 0.12 deleterious(0) probably_damaging(0.956) TCGA-77-8008-01 10 27538332 27538332 G T RP11-85G18.6 Intron 0.09 TCGA-77-8008-01 10 5009225 5009225 T A AKR1C1 Missense_Mutation p.V120E 0.15 deleterious(0.01) probably_damaging(0.953) TCGA-77-8008-01 10 62670692 62670692 C A RHOBTB1 Missense_Mutation p.W83C 0.11 deleterious(0) probably_damaging(1) TCGA-77-8008-01 10 64960315 64960315 C A JMJD1C Nonsense_Mutation p.E1733* 0.16 TCGA-77-8008-01 10 87373172 87373172 G A GRID1 Missense_Mutation p.P865S 0.21 tolerated(0.36) possibly_damaging(0.894) TCGA-77-8008-01 11 123777428 123777428 G T OR8D4 Missense_Mutation p.C97F 0.04 deleterious(0) probably_damaging(0.999) TCGA-77-8008-01 11 128781304 128781304 G A KCNJ5 Missense_Mutation p.G46S 0.05 tolerated(1) benign(0.004) TCGA-77-8008-01 11 130781599 130781599 C A SNX19 Missense_Mutation p.R581L 0.21 deleterious(0) probably_damaging(0.988) TCGA-77-8008-01 11 18955880 18955880 A T MRGPRX1 Missense_Mutation p.L151Q 0.05 deleterious(0) probably_damaging(0.991) TCGA-77-8008-01 11 4091391 4091391 G T STIM1 Missense_Mutation p.G250V 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-77-8008-01 11 46750990 46750990 G T F2 Missense_Mutation p.W511C 0.21 deleterious(0) probably_damaging(0.999) TCGA-77-8008-01 11 4790445 4790445 C A OR51F1 Nonsense_Mutation p.E235* 0.16 TCGA-77-8008-01 11 4945410 4945410 C T OR51G1 Missense_Mutation p.D54N 0.08 deleterious(0.05) benign(0.025) TCGA-77-8008-01 11 51515917 51515917 G A OR4C46 Silent p.L212L 0.07 TCGA-77-8008-01 11 70202325 70202325 G T PPFIA1 Silent p.G849G 0.06 TCGA-77-8008-01 11 72040813 72040813 T C CLPB Missense_Mutation p.T301A 0.13 tolerated(0.12) benign(0.261) TCGA-77-8008-01 11 78380114 78380114 C T TENM4 Missense_Mutation p.G2426R 0.14 deleterious(0) probably_damaging(1) TCGA-77-8008-01 11 85445447 85445447 C A SYTL2 Nonsense_Mutation p.E308* 0.04 TCGA-77-8008-01 11 92577356 92577356 T C FAT3 Missense_Mutation p.L3608P 0.06 probably_damaging(0.987) TCGA-77-8008-01 12 109898475 109898475 T A KCTD10 Missense_Mutation p.Q118L 0.17 tolerated(0.13) possibly_damaging(0.515) TCGA-77-8008-01 12 124289493 124289493 G T DNAH10 Missense_Mutation p.V847F 0.15 benign(0.011) TCGA-77-8008-01 12 85255729 85255729 C A SLC6A15 Silent p.L625L 0.14 TCGA-77-8008-01 13 23908762 23908762 C A SACS Missense_Mutation p.D3085Y 0.10 probably_damaging(0.998) TCGA-77-8008-01 13 31531105 31531105 C T TEX26 Silent p.N136N 0.08 TCGA-77-8008-01 13 37269444 37269444 C A SERTM1 Missense_Mutation p.P77T 0.14 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-77-8008-01 13 60616885 60616885 C A DIAPH3 Missense_Mutation p.D189Y 0.13 deleterious(0) possibly_damaging(0.907) TCGA-77-8008-01 13 95131297 95131297 C A DCT Missense_Mutation p.W71C 0.09 tolerated(0.08) probably_damaging(0.999) TCGA-77-8008-01 14 20528516 20528516 C T OR4L1 Missense_Mutation p.H105Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-77-8008-01 14 23857428 23857428 A G MYH6 Missense_Mutation p.V1432A 0.04 tolerated(0.19) benign(0.042) TCGA-77-8008-01 14 29237421 29237421 C T FOXG1 Silent p.P312P 0.09 TCGA-77-8008-01 14 34029416 34029416 A G NPAS3 Silent p.Q186Q 0.08 TCGA-77-8008-01 14 45373642 45373642 G C C14orf28 Missense_Mutation p.G220A 0.12 deleterious_low_confidence(0.04) benign(0.101) TCGA-77-8008-01 14 55862661 55862661 C A ATG14 Missense_Mutation p.Q108H 0.05 tolerated(0.06) benign(0.008) TCGA-77-8008-01 15 40565139 40565139 C T PAK6 Silent p.L477L 0.08 TCGA-77-8008-01 15 74486140 74486140 C A STRA6 Splice_Site p.X279_splice 0.23 TCGA-77-8008-01 15 75664494 75664494 T C SIN3A Silent p.K1216K 0.18 TCGA-77-8008-01 16 18794296 18794296 G A RPS15A 3'UTR 0.17 TCGA-77-8008-01 16 18893652 18893652 G A SMG1 Silent p.S376S 0.20 TCGA-77-8008-01 16 21049166 21049166 C A DNAH3 Nonsense_Mutation p.E1623* 0.14 TCGA-77-8008-01 16 30081148 30081148 C A ALDOA Intron 0.09 TCGA-77-8008-01 16 3788618 3788618 G A CREBBP Missense_Mutation p.R1446C 0.10 unknown(0) TCGA-77-8008-01 16 46615695 46615695 C A SHCBP1 Silent p.V655V 0.15 TCGA-77-8008-01 16 4796505 4796505 C A C16orf71 Silent p.S391S 0.10 TCGA-77-8008-01 16 49669920 49669920 C A ZNF423 Missense_Mutation p.G1048V 0.18 deleterious(0.02) possibly_damaging(0.558) TCGA-77-8008-01 16 51173562 51173562 G T SALL1 Silent p.P857P 0.11 TCGA-77-8008-01 16 57171169 57171169 A T CPNE2 Missense_Mutation p.Q426L 0.14 tolerated(0.09) benign(0.155) TCGA-77-8008-01 16 58572074 58572074 A C CNOT1 Silent p.L1744L 0.13 TCGA-77-8008-01 17 10296485 10296485 C T MYH8 Missense_Mutation p.V1737I 0.22 tolerated(0.77) benign(0.002) TCGA-77-8008-01 17 18009762 18009762 C T DRG2 Missense_Mutation p.R324W 0.03 deleterious(0) probably_damaging(0.999) TCGA-77-8008-01 17 45376793 45376793 C T ITGB3 Missense_Mutation p.R604C 0.05 deleterious(0) possibly_damaging(0.802) TCGA-77-8008-01 17 60491200 60491200 T C EFCAB3 Silent p.T377T 0.21 TCGA-77-8008-01 17 67121106 67121106 A G ABCA6 Missense_Mutation p.I397T 0.23 tolerated(0.05) benign(0.158) TCGA-77-8008-01 17 7093995 7093995 C A DLG4 3'UTR 0.22 TCGA-77-8008-01 17 7576928 7576928 T C TP53 Splice_Site p.X307_splice 0.30 TCGA-77-8008-01 17 76567762 76567762 C A DNAH17 Missense_Mutation p.Q214H 0.23 benign(0.091) TCGA-77-8008-01 17 9515676 9515676 G A WDR16 Missense_Mutation p.G302E 0.19 tolerated(0.11) benign(0.285) TCGA-77-8008-01 18 2890716 2890716 G C EMILIN2 Silent p.T197T 0.12 TCGA-77-8008-01 18 48252393 48252393 G T MAPK4 Missense_Mutation p.M305I 0.14 deleterious(0.01) benign(0.037) TCGA-77-8008-01 18 52265289 52265289 T C DYNAP Silent p.S182S 0.11 TCGA-77-8008-01 18 54423949 54423949 A G WDR7 Missense_Mutation p.R709G 0.08 tolerated(0.07) probably_damaging(0.934) TCGA-77-8008-01 18 56615307 56615307 A G ZNF532 Missense_Mutation p.Y905C 0.15 deleterious(0) probably_damaging(0.993) TCGA-77-8008-01 18 64172337 64172337 C A CDH19 Missense_Mutation p.E677D 0.11 tolerated(0.26) benign(0.026) TCGA-77-8008-01 18 67365806 67365806 G A DOK6 Silent p.T192T 0.10 TCGA-77-8008-01 18 6995381 6995381 T A LAMA1 Missense_Mutation p.E1624V 0.12 tolerated(0.25) benign(0.068) TCGA-77-8008-01 19 19351491 19351491 G T NCAN Silent p.G1163G 0.22 TCGA-77-8008-01 19 22362999 22362999 C A ZNF676 Missense_Mutation p.C507F 0.10 deleterious(0) probably_damaging(1) TCGA-77-8008-01 19 31040296 31040296 G A ZNF536 Missense_Mutation p.S1257N 0.17 tolerated_low_confidence(0.43) benign(0.001) TCGA-77-8008-01 19 34916901 34916901 C G PDCD2L Missense_Mutation p.S318C 0.12 deleterious(0.02) probably_damaging(0.951) TCGA-77-8008-01 19 46095154 46095154 C T GPR4 5'UTR 0.18 TCGA-77-8008-01 19 46307677 46307677 G A RSPH6A Missense_Mutation p.P496S 0.28 deleterious(0) probably_damaging(0.999) TCGA-77-8008-01 19 49652803 49652803 G C PPFIA3 Splice_Site p.X1119_splice 0.12 TCGA-77-8008-01 19 52660190 52660190 T A ZNF836 Missense_Mutation p.N249I 0.18 tolerated(0.13) possibly_damaging(0.825) TCGA-77-8008-01 19 54611410 54611410 C G TFPT Missense_Mutation p.G189R 0.06 deleterious(0) probably_damaging(0.986) TCGA-77-8008-01 19 54803320 54803320 T G LILRA3 Splice_Site p.X120_splice 0.23 TCGA-77-8008-01 19 55048206 55048206 A T KIR3DX1 Missense_Mutation p.H258L 0.23 deleterious(0) benign(0.002) TCGA-77-8008-01 19 56530736 56530736 T A NLRP5 Silent p.G198G 0.06 TCGA-77-8008-01 19 57066075 57066075 G A ZFP28 Missense_Mutation p.G641R 0.15 deleterious(0.02) probably_damaging(1) TCGA-77-8008-01 1 103488442 103488442 G T COL11A1 Silent p.G367G 0.08 TCGA-77-8008-01 1 10709152 10709152 A T CASZ1 Missense_Mutation p.L1045M 0.06 tolerated(0.06) possibly_damaging(0.894) TCGA-77-8008-01 1 110738261 110738261 G T SLC6A17 Nonsense_Mutation p.G516* 0.16 TCGA-77-8008-01 1 110883069 110883069 A G RBM15 Missense_Mutation p.R348G 0.15 deleterious(0.02) benign(0.026) TCGA-77-8008-01 1 155018633 155018633 T C DCST1 Silent p.A435A 0.10 TCGA-77-8008-01 1 156905998 156905998 A G ARHGEF11 Intron 0.04 TCGA-77-8008-01 1 158059539 158059539 G T KIRREL Missense_Mutation p.Q401H 0.09 deleterious(0.01) probably_damaging(0.97) TCGA-77-8008-01 1 159166231 159166231 C A CADM3 Missense_Mutation p.R291S 0.12 tolerated(0.5) benign(0.047) TCGA-77-8008-01 1 159284107 159284107 G C OR10J3 Missense_Mutation p.L115V 0.25 deleterious(0.03) possibly_damaging(0.45) TCGA-77-8008-01 1 193104673 193104673 G T CDC73 Missense_Mutation p.R126L 0.09 deleterious(0.01) possibly_damaging(0.828) TCGA-77-8008-01 1 201035354 201035354 C A CACNA1S Intron 0.11 TCGA-77-8008-01 1 216680424 216680424 G T ESRRG Missense_Mutation p.R424S 0.15 tolerated(0.12) probably_damaging(0.982) TCGA-77-8008-01 1 223284652 223284652 C A TLR5 Missense_Mutation p.L574F 0.22 deleterious(0) probably_damaging(0.954) TCGA-77-8008-01 1 224922331 224922331 C T CNIH3 Silent p.D126D 0.12 TCGA-77-8008-01 1 234367296 234367296 G - SLC35F3 Frame_Shift_Del p.A140Rfs*19 0.23 TCGA-77-8008-01 1 237982492 237982492 G T RYR2 Missense_Mutation p.G4864C 0.13 benign(0.441) TCGA-77-8008-01 1 237982493 237982493 G T RYR2 Splice_Site p.X4864_splice 0.13 TCGA-77-8008-01 1 242271007 242271008 - T PLD5 Frame_Shift_Ins p.I402Nfs*4 0.16 TCGA-77-8008-01 1 246078903 246078903 C T SMYD3 Missense_Mutation p.E248K 0.04 deleterious(0.02) possibly_damaging(0.811) TCGA-77-8008-01 1 247695440 247695440 G A OR2C3 Missense_Mutation p.A125V 0.08 tolerated(0.99) benign(0.004) TCGA-77-8008-01 1 248224640 248224640 G C OR2L3 Silent p.R219R 0.35 TCGA-77-8008-01 1 248737408 248737408 C T OR2T34 Missense_Mutation p.M217I 0.17 tolerated(0.12) benign(0.001) TCGA-77-8008-01 1 248737570 248737570 C T OR2T34 Silent p.L163L 0.14 TCGA-77-8008-01 1 29040645 29040645 A T GMEB1 Missense_Mutation p.Q361L 0.16 deleterious(0.01) probably_damaging(0.953) TCGA-77-8008-01 1 44134777 44134777 C T KDM4A Silent p.A390A 0.09 TCGA-77-8008-01 20 2635774 2635774 A G NOP56 Intron 0.16 TCGA-77-8008-01 20 2844932 2844932 G C VPS16 Silent p.L573L 0.19 TCGA-77-8008-01 20 29960801 29960801 C T DEFB118 Missense_Mutation p.A67V 0.25 tolerated(0.27) benign(0) TCGA-77-8008-01 20 44594306 44594306 G A ZNF335 Missense_Mutation p.R355W 0.09 deleterious(0) probably_damaging(1) TCGA-77-8008-01 21 28296475 28296475 G T ADAMTS5 Missense_Mutation p.T897N 0.07 deleterious(0.01) possibly_damaging(0.803) TCGA-77-8008-01 21 43984873 43984873 C T SLC37A1 Silent p.C397C 0.19 TCGA-77-8008-01 21 46233858 46233858 G A SUMO3 Intron 0.11 TCGA-77-8008-01 22 17601428 17601428 C T CECR6 Missense_Mutation p.R197H 0.29 deleterious_low_confidence(0.04) unknown(0) TCGA-77-8008-01 22 24759275 24759275 A G SPECC1L Silent p.P930P 0.08 TCGA-77-8008-01 22 39621752 39621752 T A PDGFB Silent p.A234A 0.19 TCGA-77-8008-01 22 40056361 40056361 C A CACNA1I Missense_Mutation p.R873S 0.15 deleterious(0) benign(0.353) TCGA-77-8008-01 2 108488445 108488445 G A RGPD4 Missense_Mutation p.E1329K 0.12 deleterious(0) probably_damaging(0.952) TCGA-77-8008-01 2 141253170 141253170 G T LRP1B Missense_Mutation p.Q3000K 0.03 benign(0.001) TCGA-77-8008-01 2 141259268 141259268 C A LRP1B Silent p.P2946P 0.19 TCGA-77-8008-01 2 171239619 171239619 G A MYO3B Missense_Mutation p.D369N 0.16 tolerated(0.23) benign(0.01) TCGA-77-8008-01 2 179571410 179571410 A G TTN Missense_Mutation p.W9731R 0.12 TCGA-77-8008-01 2 179610419 179610419 T A TTN Intron 0.10 TCGA-77-8008-01 2 179656846 179656846 T C TTN Missense_Mutation p.I539V 0.24 TCGA-77-8008-01 2 1926633 1926633 C A MYT1L Missense_Mutation p.G303V 0.10 deleterious_low_confidence(0) possibly_damaging(0.637) TCGA-77-8008-01 2 198285183 198285183 A T SF3B1 Silent p.I128I 0.11 TCGA-77-8008-01 2 202625603 202625603 C A ALS2 Splice_Site p.X371_splice 0.12 TCGA-77-8008-01 2 202672673 202672673 C A CDK15 Missense_Mutation p.S122R 0.07 deleterious(0.01) probably_damaging(0.98) TCGA-77-8008-01 2 209150497 209150497 G T PIKFYVE Missense_Mutation p.A221S 0.12 tolerated(0.14) possibly_damaging(0.624) TCGA-77-8008-01 2 233348919 233348919 T C ECEL1 Missense_Mutation p.Y400C 0.22 deleterious(0) probably_damaging(1) TCGA-77-8008-01 2 24881553 24881553 G T NCOA1 Missense_Mutation p.G3C 0.11 deleterious(0) probably_damaging(0.994) TCGA-77-8008-01 2 79384700 79384700 G T REG3A Missense_Mutation p.T153K 0.21 deleterious(0.02) benign(0.068) TCGA-77-8008-01 2 85892907 85892907 C A SFTPB Missense_Mutation p.G147V 0.06 tolerated(0.57) benign(0.01) TCGA-77-8008-01 2 98709666 98709666 G T VWA3B Missense_Mutation p.E37D 0.18 tolerated(0.12) benign(0.019) TCGA-77-8008-01 3 113878714 113878714 C T DRD3 Missense_Mutation p.V91M 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-77-8008-01 3 119469792 119469792 G T MAATS1 Missense_Mutation p.A718S 0.09 tolerated(0.78) benign(0.025) TCGA-77-8008-01 3 129267841 129267841 C G H1FOO Intron 0.23 TCGA-77-8008-01 3 131068452 131068452 C T NEK11 Silent p.Y590Y 0.11 TCGA-77-8008-01 3 138762857 138762857 G A PRR23C Silent p.P202P 0.13 TCGA-77-8008-01 3 142389962 142389962 C T PLS1 Missense_Mutation p.S121L 0.15 deleterious(0.02) benign(0.09) TCGA-77-8008-01 3 147131266 147131266 C A ZIC1 Silent p.P424P 0.27 TCGA-77-8008-01 3 155210544 155210544 C A PLCH1 Missense_Mutation p.D749Y 0.13 deleterious(0.02) probably_damaging(1) TCGA-77-8008-01 3 182941209 182941209 C T MCF2L2 Silent p.L742L 0.06 TCGA-77-8008-01 3 38158516 38158516 G T DLEC1 Missense_Mutation p.M1410I 0.18 tolerated(0.17) benign(0.001) TCGA-77-8008-01 3 97652662 97652662 G T CRYBG3 Missense_Mutation p.W841L 0.14 deleterious(0.02) probably_damaging(0.993) TCGA-77-8008-01 3 99513557 99513557 T A COL8A1 Missense_Mutation p.V271E 0.35 deleterious(0.01) unknown(0) TCGA-77-8008-01 4 1244492 1244492 G T CTBP1 5'Flank 0.09 TCGA-77-8008-01 4 125590180 125590180 C A ANKRD50 Missense_Mutation p.D1418Y 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.758) TCGA-77-8008-01 4 126329759 126329759 A G FAT4 Silent p.Q1910Q 0.06 TCGA-77-8008-01 4 159894367 159894367 C A C4orf45 Missense_Mutation p.R54I 0.08 deleterious(0.04) possibly_damaging(0.645) TCGA-77-8008-01 4 175564969 175564969 T A GLRA3 Missense_Mutation p.R455W 0.21 deleterious_low_confidence(0.01) benign(0.062) TCGA-77-8008-01 4 187629129 187629129 T - FAT1 Frame_Shift_Del p.N618Tfs*9 0.13 TCGA-77-8008-01 4 2927769 2927769 A G ADD1 Silent p.K628K 0.10 TCGA-77-8008-01 4 46060504 46060504 G T GABRG1 Missense_Mutation p.S254Y 0.10 deleterious(0) probably_damaging(0.925) TCGA-77-8008-01 4 47455193 47455193 C T COMMD8 Missense_Mutation p.M138I 0.20 tolerated(0.32) benign(0.11) TCGA-77-8008-01 4 76841118 76841118 T C NAAA Missense_Mutation p.I305V 0.19 tolerated(0.17) benign(0.196) TCGA-77-8008-01 5 127448508 127448508 A G SLC12A2 Silent p.E253E 0.12 TCGA-77-8008-01 5 140229994 140229994 C T PCDHA9 Silent p.D638D 0.15 TCGA-77-8008-01 5 148421036 148421036 C A SH3TC2 Missense_Mutation p.G225V 0.26 deleterious(0) probably_damaging(0.997) TCGA-77-8008-01 5 32406959 32406959 G A ZFR Nonsense_Mutation p.Q318* 0.18 TCGA-77-8008-01 5 52096250 52096250 A T PELO Missense_Mutation p.I8F 0.10 tolerated(0.33) benign(0.019) TCGA-77-8008-01 5 60189172 60189172 T C ERCC8 Intron 0.27 TCGA-77-8008-01 5 65374297 65374297 C T ERBB2IP Missense_Mutation p.S1400F 0.16 deleterious(0) probably_damaging(0.974) TCGA-77-8008-01 6 110726021 110726021 G T DDO Silent p.T166T 0.07 TCGA-77-8008-01 6 11778973 11778973 C T ADTRP Missense_Mutation p.C7Y 0.24 deleterious(0.04) possibly_damaging(0.905) TCGA-77-8008-01 6 132874416 132874416 A T TAAR8 Missense_Mutation p.Q195H 0.16 deleterious(0) possibly_damaging(0.897) TCGA-77-8008-01 6 136582509 136582509 C G BCLAF1 Missense_Mutation p.S884T 0.05 deleterious(0.01) benign(0.294) TCGA-77-8008-01 6 15615527 15615527 C A DTNBP1 Missense_Mutation p.Q153H 0.13 tolerated(0.5) possibly_damaging(0.867) TCGA-77-8008-01 6 16328067 16328067 C G ATXN1 Missense_Mutation p.V159L 0.11 tolerated(0.09) benign(0.101) TCGA-77-8008-01 6 167571171 167571171 G T GPR31 Missense_Mutation p.A50D 0.17 deleterious(0.04) possibly_damaging(0.889) TCGA-77-8008-01 6 29342957 29342957 G T OR12D3 Missense_Mutation p.N36K 0.08 deleterious(0.01) benign(0.382) TCGA-77-8008-01 6 29942991 29942991 C A HCG9 RNA 0.12 TCGA-77-8008-01 6 31902024 31902024 C T C2 Missense_Mutation p.S266L 0.10 deleterious(0.02) benign(0.011) TCGA-77-8008-01 6 32183142 32183142 G A NOTCH4 Silent p.L628L 0.17 TCGA-77-8008-01 6 32487154 32487154 C T HLA-DRB5 Silent p.V215V 0.14 TCGA-77-8008-01 6 35836853 35836853 G A SRPK1 Silent p.P482P 0.17 TCGA-77-8008-01 6 39869225 39869225 C A DAAM2 Silent p.R987R 0.29 TCGA-77-8008-01 6 43578443 43578443 T C POLH Silent p.S409S 0.13 TCGA-77-8008-01 6 49986784 49986784 A T DEFB110 Missense_Mutation p.I37K 0.08 tolerated(1) benign(0) TCGA-77-8008-01 6 51524297 51524297 A G PKHD1 Silent p.L3543L 0.11 TCGA-77-8008-01 6 70875854 70875854 A T COL19A1 Nonsense_Mutation p.K808* 0.14 TCGA-77-8008-01 6 84650271 84650271 G T CYB5R4 Missense_Mutation p.D433Y 0.07 deleterious(0) probably_damaging(0.992) TCGA-77-8008-01 6 87965792 87965792 T C ZNF292 Silent p.G815G 0.13 TCGA-77-8008-01 6 93965555 93965555 A T EPHA7 Nonsense_Mutation p.Y791* 0.10 TCGA-77-8008-01 7 100285702 100285702 C A GIGYF1 Missense_Mutation p.A23S 0.12 tolerated(0.11) unknown(0) TCGA-77-8008-01 7 111575595 111575595 C A DOCK4 Missense_Mutation p.G356C 0.13 deleterious(0) probably_damaging(1) TCGA-77-8008-01 7 126698165 126698165 G T GRM8 Intron 0.11 TCGA-77-8008-01 7 141752678 141752678 A C MGAM Missense_Mutation p.D1018A 0.10 tolerated(0.07) benign(0.005) TCGA-77-8008-01 7 143792430 143792430 T C OR2A12 Missense_Mutation p.V77A 0.19 deleterious(0.01) benign(0.12) TCGA-77-8008-01 7 154684522 154684522 C T DPP6 3'UTR 0.13 TCGA-77-8008-01 7 23775444 23775444 G T STK31 Silent p.G257G 0.31 TCGA-77-8008-01 7 30795104 30795104 C A INMT Silent p.V143V 0.38 TCGA-77-8008-01 7 31682570 31682570 C A CCDC129 Missense_Mutation p.T555K 0.30 tolerated(0.71) benign(0.256) TCGA-77-8008-01 7 41729711 41729711 C - INHBA Frame_Shift_Del p.G273Afs*86 0.10 TCGA-77-8008-01 7 44190612 44190612 C T GCK Silent p.K143K 0.07 TCGA-77-8008-01 7 45791201 45791201 T C SEPT7P2 RNA 0.29 TCGA-77-8008-01 7 72849841 72849841 G T FZD9 Missense_Mutation p.G502C 0.11 tolerated(0.05) possibly_damaging(0.819) TCGA-77-8008-01 7 75610923 75610923 A G POR Missense_Mutation p.S244G 0.11 tolerated(0.13) benign(0.037) TCGA-77-8008-01 7 77824370 77824370 C A MAGI2 Missense_Mutation p.R697L 0.17 deleterious(0.03) benign(0.008) TCGA-77-8008-01 7 82508735 82508735 C A PCLO Silent p.P4524P 0.14 TCGA-77-8008-01 7 87150103 87150103 C T ABCB1 Silent p.Q925Q 0.10 TCGA-77-8008-01 7 897491 897491 C A SUN1 Missense_Mutation p.T474K 0.24 tolerated(0.95) benign(0.011) TCGA-77-8008-01 7 94898644 94898644 C G PPP1R9A Silent p.P983P 0.14 TCGA-77-8008-01 7 99022950 99022950 G A ATP5J2-PTCD1 Missense_Mutation p.P451L 0.10 tolerated(0.33) benign(0.001) TCGA-77-8008-01 8 108276513 108276513 A G ANGPT1 Silent p.D424D 0.10 TCGA-77-8008-01 8 125990069 125990069 C T ZNF572 Missense_Mutation p.S520F 0.07 deleterious_low_confidence(0.01) unknown(0) TCGA-77-8008-01 8 143694758 143694758 T A ARC Missense_Mutation p.Q292L 0.13 deleterious(0) possibly_damaging(0.669) TCGA-77-8008-01 8 145541231 145541231 G A DGAT1 Silent p.I319I 0.05 TCGA-77-8008-01 8 41790306 41790306 G A KAT6A Missense_Mutation p.T1811M 0.05 unknown(0) TCGA-77-8008-01 8 54764475 54764475 C T RGS20 Nonsense_Mutation p.Q6* 0.12 TCGA-77-8008-01 8 67763107 67763107 G T SGK3 Missense_Mutation p.W424C 0.16 deleterious(0) probably_damaging(0.991) TCGA-77-8008-01 8 80523449 80523449 G A STMN2 Missense_Mutation p.A7T 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-77-8008-01 9 112189262 112189262 C T PTPN3 Silent p.Q323Q 0.13 TCGA-77-8008-01 9 140082510 140082510 G A ANAPC2 Missense_Mutation p.L55F 0.19 tolerated(0.55) benign(0.115) TCGA-77-8008-01 9 14619681 14619681 C T ZDHHC21 Splice_Site p.X208_splice 0.22 TCGA-77-8008-01 9 34622491 34622491 G C ARID3C Missense_Mutation p.P301A 0.12 deleterious(0.05) probably_damaging(0.998) TCGA-77-8008-01 9 84530569 84530569 C G SPATA31D5P RNA 0.17 TCGA-77-8008-01 X 132352073 132352073 A G TFDP3 Missense_Mutation p.V72A 0.28 deleterious(0.03) benign(0.01) TCGA-77-8008-01 X 15262659 15262659 T C ASB9 Missense_Mutation p.E285G 0.28 deleterious(0.05) possibly_damaging(0.543) TCGA-77-8008-01 X 30260933 30260933 G T MAGEB4 Silent p.L227L 0.22 TCGA-77-8008-01 X 50378046 50378046 C A SHROOM4 Nonsense_Mutation p.E343* 0.33 TCGA-77-8008-01 X 70346885 70346885 T C MED12 Missense_Mutation p.Y918H 0.10 probably_damaging(0.999) TCGA-77-8009-01 10 118321015 118321015 A C PNLIP Missense_Mutation p.N401H 0.67 tolerated(0.3) benign(0.011) TCGA-77-8009-01 10 120450867 120450867 A T CACUL1 Missense_Mutation p.I312N 0.23 deleterious(0) probably_damaging(0.965) TCGA-77-8009-01 10 27537838 27537838 G C RP11-85G18.6 Intron 0.21 TCGA-77-8009-01 10 33495257 33495257 C T NRP1 Intron 0.12 TCGA-77-8009-01 10 37506675 37506675 G A ANKRD30A Missense_Mutation p.E990K 0.25 tolerated(0.19) possibly_damaging(0.636) TCGA-77-8009-01 10 42831746 42831746 G T RP11-313J2.1 RNA 0.70 TCGA-77-8009-01 10 56106238 56106238 G T PCDH15 Missense_Mutation p.P161T 0.79 deleterious(0.02) probably_damaging(0.997) TCGA-77-8009-01 10 71021013 71021013 G A HKDC1 Missense_Mutation p.G779S 0.52 deleterious(0.02) benign(0.117) TCGA-77-8009-01 10 93991 93991 T A TUBB8 Missense_Mutation p.E114V 0.15 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-77-8009-01 10 96269922 96269922 T C TBC1D12 Missense_Mutation p.Y559H 0.67 tolerated(0.45) possibly_damaging(0.879) TCGA-77-8009-01 10 96269923 96269923 A T TBC1D12 Missense_Mutation p.Y559F 0.67 tolerated(0.61) benign(0.015) TCGA-77-8009-01 11 132527024 132527024 C A OPCML Missense_Mutation p.D120Y 0.70 deleterious(0) probably_damaging(0.986) TCGA-77-8009-01 11 17190373 17190373 C T PIK3C2A Missense_Mutation p.A306T 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-77-8009-01 11 22294470 22294470 G T ANO5 Missense_Mutation p.A724S 0.15 deleterious(0.02) possibly_damaging(0.906) TCGA-77-8009-01 11 36516574 36516574 C A TRAF6 Missense_Mutation p.L210F 0.10 tolerated(0.55) probably_damaging(0.995) TCGA-77-8009-01 11 51515801 51515801 C T OR4C46 Missense_Mutation p.H174Y 0.09 deleterious_low_confidence(0) benign(0.33) TCGA-77-8009-01 11 57958846 57958846 A G OR9Q2 Missense_Mutation p.K295R 0.18 deleterious(0.04) benign(0.071) TCGA-77-8009-01 11 59271520 59271520 G A OR4D11 Missense_Mutation p.V158M 0.21 deleterious(0.02) possibly_damaging(0.527) TCGA-77-8009-01 11 6472598 6472598 C T TRIM3 Missense_Mutation p.R535H 0.17 deleterious(0.01) probably_damaging(1) TCGA-77-8009-01 11 85435104 85435104 G A SYTL2 Missense_Mutation p.S799F 0.08 deleterious(0.02) probably_damaging(0.992) TCGA-77-8009-01 11 94602508 94602508 G C AMOTL1 Missense_Mutation p.Q878H 0.47 deleterious(0) probably_damaging(0.993) TCGA-77-8009-01 11 99715931 99715931 C T CNTN5 Nonsense_Mutation p.Q172* 0.63 TCGA-77-8009-01 12 110930970 110930970 G A VPS29 Missense_Mutation p.H92Y 0.16 tolerated(0.05) benign(0.039) TCGA-77-8009-01 12 122439496 122439496 C G WDR66 Missense_Mutation p.S1110C 0.29 deleterious(0.05) benign(0.013) TCGA-77-8009-01 12 124220121 124220121 C T ATP6V0A2 Missense_Mutation p.R259W 0.27 deleterious(0) probably_damaging(0.961) TCGA-77-8009-01 12 126068453 126068453 C G TMEM132B Silent p.V445V 0.32 TCGA-77-8009-01 12 133291505 133291505 C T PGAM5 Silent p.L85L 0.04 TCGA-77-8009-01 12 41966511 41966511 G A PDZRN4 Missense_Mutation p.D644N 0.10 tolerated(0.2) possibly_damaging(0.907) TCGA-77-8009-01 12 4627241 4627241 T C C12orf4 Missense_Mutation p.Y339C 0.44 deleterious(0) probably_damaging(0.999) TCGA-77-8009-01 12 56553498 56553498 G A MYL6 Silent p.G53G 0.27 TCGA-77-8009-01 12 64587770 64587770 C T C12orf66 Missense_Mutation p.R397H 0.09 deleterious(0.04) probably_damaging(0.983) TCGA-77-8009-01 12 76449930 76449930 T A NAP1L1 Missense_Mutation p.K147N 0.19 tolerated(0.06) benign(0.395) TCGA-77-8009-01 12 81110983 81110983 G T MYF5 Missense_Mutation p.Q47H 0.23 tolerated(0.19) benign(0.377) TCGA-77-8009-01 12 81536955 81536955 G A ACSS3 Missense_Mutation p.D284N 0.13 deleterious(0.02) probably_damaging(0.957) TCGA-77-8009-01 12 9001428 9001428 T C A2ML1 Missense_Mutation p.M649T 0.45 tolerated(0.42) benign(0.001) TCGA-77-8009-01 13 107822961 107822961 C T FAM155A Missense_Mutation p.V421I 0.14 tolerated(0.08) probably_damaging(0.987) TCGA-77-8009-01 13 29600556 29600556 C G MTUS2 Missense_Mutation p.P584R 0.40 deleterious(0) possibly_damaging(0.748) TCGA-77-8009-01 13 60453416 60453416 C T DIAPH3 Missense_Mutation p.A852T 0.34 tolerated(0.09) probably_damaging(0.999) TCGA-77-8009-01 14 106829703 106829703 G T IGHV4-34 Missense_Mutation p.P87Q 0.51 deleterious(0.02) probably_damaging(0.971) TCGA-77-8009-01 14 70990127 70990127 C T ADAM20 Missense_Mutation p.G500R 0.85 deleterious(0) probably_damaging(0.999) TCGA-77-8009-01 14 94088299 94088299 C T UNC79 Nonsense_Mutation p.R1397* 0.56 TCGA-77-8009-01 15 101427914 101427914 G T ALDH1A3 Missense_Mutation p.L114F 0.26 deleterious(0.01) probably_damaging(0.915) TCGA-77-8009-01 15 23445341 23445341 C T AC100757.1 3'Flank 0.15 TCGA-77-8009-01 15 41245820 41245820 C A CHAC1 Silent p.T55T 0.80 TCGA-77-8009-01 15 93007679 93007679 A G ST8SIA2 3'UTR 0.78 TCGA-77-8009-01 16 22142525 22142525 G T VWA3A Splice_Site p.X551_splice 0.23 TCGA-77-8009-01 16 22926932 22926932 G T HS3ST2 3'UTR 0.26 TCGA-77-8009-01 16 29675036 29675036 C A SPN 5'UTR 0.11 TCGA-77-8009-01 16 3107373 3107373 C T MMP25 Missense_Mutation p.P301S 0.05 tolerated(0.08) benign(0.17) TCGA-77-8009-01 16 57597069 57597069 G A GPR114 Silent p.Q69Q 0.42 TCGA-77-8009-01 16 67219044 67219044 C T EXOC3L1 Missense_Mutation p.V582I 0.07 tolerated(0.42) benign(0.1) TCGA-77-8009-01 16 68847249 68847249 G A CDH1 Missense_Mutation p.V391I 0.04 tolerated(0.38) benign(0.003) TCGA-77-8009-01 17 16722608 16722608 C T AC022596.6 RNA 0.10 TCGA-77-8009-01 17 2227483 2227483 G C SRR 3'UTR 0.24 TCGA-77-8009-01 17 26942110 26942110 T G KIAA0100 Missense_Mutation p.K2227T 0.36 deleterious(0) probably_damaging(0.959) TCGA-77-8009-01 17 27207543 27207543 C A FLOT2 3'UTR 0.49 TCGA-77-8009-01 17 27208938 27208938 C T FLOT2 Missense_Mutation p.V270M 0.33 deleterious(0) possibly_damaging(0.83) TCGA-77-8009-01 17 34236345 34236345 C T AC015849.16 RNA 0.12 TCGA-77-8009-01 17 39038873 39038873 C A KRT20 Missense_Mutation p.V142F 0.36 deleterious(0.04) benign(0.06) TCGA-77-8009-01 17 48183261 48183261 C T PDK2 Silent p.A115A 0.29 TCGA-77-8009-01 17 57297938 57297938 C A GDPD1 5'UTR 0.46 TCGA-77-8009-01 17 61841436 61841436 G A CCDC47 Missense_Mutation p.L163F 0.38 deleterious(0.01) benign(0.315) TCGA-77-8009-01 17 61972816 61972816 C T CSH1 Intron 0.53 TCGA-77-8009-01 17 72739304 72739304 G A RAB37 Missense_Mutation p.V100I 0.11 tolerated(0.49) possibly_damaging(0.474) TCGA-77-8009-01 18 22057176 22057176 A - HRH4 Frame_Shift_Del p.M276Wfs*10 0.30 TCGA-77-8009-01 18 29056036 29056036 C T DSG3 Missense_Mutation p.S938L 0.14 deleterious(0.02) benign(0.016) TCGA-77-8009-01 18 3188903 3188903 G C MYOM1 Missense_Mutation p.S205C 0.28 deleterious_low_confidence(0.04) benign(0.436) TCGA-77-8009-01 18 63547973 63547973 C - CDH7 Frame_Shift_Del p.A734Vfs*15 0.13 TCGA-77-8009-01 18 70209096 70209096 G T CBLN2 Missense_Mutation p.S100R 0.55 tolerated(0.08) possibly_damaging(0.833) TCGA-77-8009-01 19 10602767 10602767 C A KEAP1 Missense_Mutation p.V271L 0.80 deleterious(0) probably_damaging(0.927) TCGA-77-8009-01 19 10794147 10794147 C T ILF3 Missense_Mutation p.L598F 0.08 tolerated(0.16) benign(0.446) TCGA-77-8009-01 19 11558569 11558569 C G PRKCSH Missense_Mutation p.P357R 0.31 deleterious(0.01) probably_damaging(1) TCGA-77-8009-01 19 17688865 17688865 C T COLGALT1 Silent p.G411G 0.09 TCGA-77-8009-01 19 22018903 22018903 G A ZNF43 5'UTR 0.08 TCGA-77-8009-01 19 42864963 42864963 T C MEGF8 Missense_Mutation p.V1775A 0.42 deleterious(0.01) benign(0.087) TCGA-77-8009-01 19 49183518 49183518 G A RN7SL345P 5'Flank 0.35 TCGA-77-8009-01 19 52825050 52825050 G A ZNF480 Missense_Mutation p.D183N 0.08 tolerated(0.38) probably_damaging(0.941) TCGA-77-8009-01 19 53571701 53571701 G A ZNF160 Nonsense_Mutation p.Q696* 0.08 TCGA-77-8009-01 19 55526235 55526235 G A GP6 Nonsense_Mutation p.R360* 0.34 TCGA-77-8009-01 19 56113497 56113497 G C ZNF524 Missense_Mutation p.D7H 0.45 deleterious_low_confidence(0.02) unknown(0) TCGA-77-8009-01 19 56696640 56696640 A G GALP 3'UTR 0.21 TCGA-77-8009-01 19 57335785 57335785 C G PEG3 Missense_Mutation p.R80P 0.41 deleterious(0.01) possibly_damaging(0.844) TCGA-77-8009-01 19 57910309 57910309 C T ZNF548 Silent p.I230I 0.06 TCGA-77-8009-01 19 9059280 9059280 G A MUC16 Missense_Mutation p.T9389I 0.05 unknown(0) TCGA-77-8009-01 19 9960291 9960291 G A PIN1 3'UTR 0.29 TCGA-77-8009-01 1 111890377 111890377 T C PIFO Missense_Mutation p.F81L 0.77 tolerated(0.06) probably_damaging(0.999) TCGA-77-8009-01 1 117127430 117127430 A G IGSF3 Silent p.S915S 0.08 TCGA-77-8009-01 1 150432636 150432636 A G RPRD2 Silent p.P418P 0.69 TCGA-77-8009-01 1 152276877 152276877 T C FLG Silent p.S3495S 0.25 TCGA-77-8009-01 1 152648879 152648879 G T LCE2C 3'UTR 0.31 TCGA-77-8009-01 1 156347124 156347124 G T RHBG Missense_Mutation p.G74C 0.53 deleterious(0) probably_damaging(0.995) TCGA-77-8009-01 1 157491042 157491042 C T FCRL5 Silent p.G760G 0.06 TCGA-77-8009-01 1 157767584 157767584 G T FCRL1 Intron 0.62 TCGA-77-8009-01 1 158815391 158815391 G A MNDA Silent p.Q195Q 0.16 TCGA-77-8009-01 1 160784474 160784474 C T LY9 Missense_Mutation p.A332V 0.10 deleterious(0) probably_damaging(0.917) TCGA-77-8009-01 1 165638241 165638241 C A ALDH9A1 Missense_Mutation p.V377L 0.24 tolerated(1) benign(0.004) TCGA-77-8009-01 1 169349838 169349838 C T BLZF1 Missense_Mutation p.A263V 0.04 tolerated(0.28) benign(0.008) TCGA-77-8009-01 1 200801970 200801970 A G CAMSAP2 Missense_Mutation p.I308M 0.32 deleterious(0) possibly_damaging(0.887) TCGA-77-8009-01 1 201777624 201777624 G A NAV1 Silent p.S1308S 0.07 TCGA-77-8009-01 1 202126875 202126875 A T PTPN7 Missense_Mutation p.I233N 0.23 deleterious(0) probably_damaging(0.998) TCGA-77-8009-01 1 204587364 204587364 C T LRRN2 Missense_Mutation p.R586H 0.12 tolerated(1) benign(0.189) TCGA-77-8009-01 1 241031947 241031947 C A RGS7 Missense_Mutation p.K183N 0.32 deleterious(0) probably_damaging(0.993) TCGA-77-8009-01 1 248402551 248402551 G A OR2M4 Silent p.L107L 0.11 TCGA-77-8009-01 1 34102110 34102110 C T CSMD2 Missense_Mutation p.G1567S 0.07 deleterious(0.01) probably_damaging(0.974) TCGA-77-8009-01 1 34663022 34663022 C A C1orf94 Missense_Mutation p.R173S 0.74 tolerated(0.72) benign(0.056) TCGA-77-8009-01 1 86921221 86921221 A G CLCA2 3'UTR 0.50 TCGA-77-8009-01 20 19662597 19662597 G T SLC24A3 Missense_Mutation p.S288I 0.49 tolerated(0.23) benign(0.04) TCGA-77-8009-01 20 29633898 29633898 A T FRG1B Missense_Mutation p.R179S 0.16 deleterious(0.01) possibly_damaging(0.687) TCGA-77-8009-01 20 48456127 48456127 G A SLC9A8 Silent p.A113A 0.11 TCGA-77-8009-01 21 11039127 11039127 C T BAGE2 RNA 0.04 TCGA-77-8009-01 21 22790889 22790889 G T NCAM2 Missense_Mutation p.D494Y 0.21 deleterious(0) probably_damaging(0.962) TCGA-77-8009-01 21 34635260 34635260 G A IFNAR2 Missense_Mutation p.G335S 0.63 tolerated(0.09) benign(0.018) TCGA-77-8009-01 21 37692592 37692592 C G MORC3 Silent p.R10R 0.33 TCGA-77-8009-01 21 41719699 41719699 G A DSCAM Missense_Mutation p.L370F 0.15 tolerated(0.06) possibly_damaging(0.58) TCGA-77-8009-01 21 45110187 45110187 A G RRP1B Missense_Mutation p.S629G 0.46 tolerated(0.21) benign(0.004) TCGA-77-8009-01 22 43986007 43986007 C T EFCAB6 Silent p.L993L 0.29 TCGA-77-8009-01 22 50664559 50664559 G A TUBGCP6 Missense_Mutation p.P585S 0.10 deleterious(0) probably_damaging(0.969) TCGA-77-8009-01 22 50688070 50688070 T C HDAC10 Missense_Mutation p.D186G 0.50 deleterious(0) probably_damaging(0.943) TCGA-77-8009-01 2 116497356 116497356 G T DPP10 Missense_Mutation p.D251Y 0.10 deleterious(0) probably_damaging(0.995) TCGA-77-8009-01 2 163134033 163134033 C T IFIH1 Missense_Mutation p.D646N 0.45 tolerated_low_confidence(0.08) possibly_damaging(0.548) TCGA-77-8009-01 2 167322424 167322424 A T SCN7A Missense_Mutation p.F246L 0.32 deleterious(0.04) benign(0.058) TCGA-77-8009-01 2 179401757 179401757 G A TTN Missense_Mutation p.A33360V 0.43 TCGA-77-8009-01 2 179433982 179433982 A G TTN Missense_Mutation p.L25626S 0.45 TCGA-77-8009-01 2 180311380 180311380 G T ZNF385B Missense_Mutation p.S263Y 0.43 deleterious(0.01) benign(0.36) TCGA-77-8009-01 2 197008350 197008350 C T STK17B Missense_Mutation p.G181R 0.12 deleterious(0) probably_damaging(1) TCGA-77-8009-01 2 205986322 205986322 G A PARD3B Missense_Mutation p.D272N 0.11 tolerated(0.09) probably_damaging(0.996) TCGA-77-8009-01 2 220412389 220412389 G A TMEM198 Missense_Mutation p.A110T 0.85 tolerated(1) possibly_damaging(0.787) TCGA-77-8009-01 2 223917644 223917644 T C KCNE4 Silent p.N32N 0.79 TCGA-77-8009-01 2 242793182 242793182 G A PDCD1 3'UTR 0.89 TCGA-77-8009-01 2 44539829 44539829 C T SLC3A1 Silent p.Y479Y 0.58 TCGA-77-8009-01 2 56420577 56420577 T C CCDC85A Splice_Site p.X414_splice 0.06 TCGA-77-8009-01 2 64863742 64863742 G C SERTAD2 Silent p.P88P 0.20 TCGA-77-8009-01 2 65480902 65480902 G A ACTR2 Silent p.V168V 0.12 TCGA-77-8009-01 2 65480953 65480953 G C ACTR2 Missense_Mutation p.R185S 0.09 tolerated(0.17) benign(0.152) TCGA-77-8009-01 2 65480985 65480985 G C ACTR2 Missense_Mutation p.R196T 0.05 tolerated(0.2) benign(0.331) TCGA-77-8009-01 2 66670100 66670100 G A MEIS1 Missense_Mutation p.D184N 0.06 deleterious(0) probably_damaging(0.995) TCGA-77-8009-01 2 73518876 73518876 G C EGR4 Missense_Mutation p.S493R 0.54 tolerated(0.34) benign(0.006) TCGA-77-8009-01 2 86831479 86831479 C A RNF103 Missense_Mutation p.W515C 0.40 deleterious(0) probably_damaging(0.999) TCGA-77-8009-01 3 113627872 113627872 A C GRAMD1C Missense_Mutation p.K286T 0.12 tolerated(0.08) benign(0.199) TCGA-77-8009-01 3 1414584 1414584 C T CNTN6 Silent p.C577C 0.14 TCGA-77-8009-01 3 147113825 147113825 G C ZIC4 Missense_Mutation p.Q218E 0.64 deleterious(0.03) possibly_damaging(0.527) TCGA-77-8009-01 3 155611419 155611419 A T GMPS Missense_Mutation p.E47V 0.08 deleterious(0) probably_damaging(0.998) TCGA-77-8009-01 3 158289180 158289180 G A MLF1 Intron 0.06 TCGA-77-8009-01 3 164772985 164772985 C T SI Nonsense_Mutation p.W503* 0.04 TCGA-77-8009-01 3 182597411 182597411 C T ATP11B Missense_Mutation p.R794C 0.06 deleterious(0) probably_damaging(1) TCGA-77-8009-01 3 186256484 186256484 A C CRYGS 3'UTR 0.07 TCGA-77-8009-01 3 74350923 74350924 - C CNTN3 Frame_Shift_Ins p.D607Gfs*2 0.34 TCGA-77-8009-01 4 100470454 100470454 T C TRMT10A Missense_Mutation p.I271V 0.85 tolerated(1) benign(0.008) TCGA-77-8009-01 4 118005461 118005461 C T TRAM1L1 Silent p.K363K 0.13 TCGA-77-8009-01 4 120422408 120422408 C T PDE5A Missense_Mutation p.D803N 0.12 deleterious(0.05) probably_damaging(1) TCGA-77-8009-01 4 128807754 128807754 G A PLK4 Missense_Mutation p.R410K 0.77 deleterious(0.03) benign(0.15) TCGA-77-8009-01 4 149356518 149356518 C T NR3C2 Missense_Mutation p.D499N 0.08 deleterious(0) possibly_damaging(0.811) TCGA-77-8009-01 4 166254725 166254725 C T MSMO1 Missense_Mutation p.P68L 0.76 deleterious(0) probably_damaging(1) TCGA-77-8009-01 4 22440014 22440014 C G GPR125 Missense_Mutation p.G317A 0.65 tolerated(0.26) probably_damaging(1) TCGA-77-8009-01 4 70707779 70707779 T C SULT1E1 Missense_Mutation p.E273G 0.72 deleterious(0) probably_damaging(0.936) TCGA-77-8009-01 4 71555131 71555131 C G UTP3 Missense_Mutation p.P246R 0.77 deleterious(0) probably_damaging(0.996) TCGA-77-8009-01 4 73979549 73979549 T C ANKRD17 Missense_Mutation p.K1454R 0.78 possibly_damaging(0.624) TCGA-77-8009-01 5 131309007 131309007 G A ACSL6 Silent p.P385P 0.16 TCGA-77-8009-01 5 131411468 131411468 T C CSF2 Missense_Mutation p.F120L 0.30 tolerated(0.06) benign(0.209) TCGA-77-8009-01 5 140202503 140202503 C T PCDHA5 Silent p.N381N 0.12 TCGA-77-8009-01 5 140589932 140589932 C A PCDHB12 Missense_Mutation p.Q485K 0.23 tolerated_low_confidence(0.13) benign(0.378) TCGA-77-8009-01 5 140740646 140740646 A G PCDHGB2 Missense_Mutation p.Y315C 0.29 deleterious(0) probably_damaging(0.999) TCGA-77-8009-01 5 141243704 141243704 C A PCDH1 Missense_Mutation p.R731L 0.22 tolerated(0.28) benign(0.296) TCGA-77-8009-01 5 143587044 143587044 C T KCTD16 Missense_Mutation p.A256V 0.20 deleterious(0) benign(0.03) TCGA-77-8009-01 5 16935980 16935980 C G MYO10 5'UTR 0.50 TCGA-77-8009-01 5 179192604 179192604 T A MAML1 Nonsense_Mutation p.L198* 0.47 TCGA-77-8009-01 5 194906 194906 C - LRRC14B Frame_Shift_Del p.H329Tfs*34 0.50 TCGA-77-8009-01 5 23526767 23526767 G T PRDM9 Missense_Mutation p.V524F 0.17 tolerated(0.06) benign(0.051) TCGA-77-8009-01 5 24593546 24593546 A T CDH10 Missense_Mutation p.H18Q 0.33 tolerated(0.38) benign(0.001) TCGA-77-8009-01 5 49699263 49699263 T G EMB Missense_Mutation p.K209T 0.17 deleterious(0) possibly_damaging(0.462) TCGA-77-8009-01 5 54941616 54941616 C A SLC38A9 Splice_Site p.X389_splice 0.22 TCGA-77-8009-01 5 639257 639257 G T CEP72 Silent p.A420A 0.50 TCGA-77-8009-01 5 639258 639258 G T CEP72 Missense_Mutation p.A421S 0.51 tolerated(0.26) possibly_damaging(0.451) TCGA-77-8009-01 5 67588927 67588927 A C PIK3R1 Splice_Site p.X340_splice 0.65 TCGA-77-8009-01 5 7869301 7869301 A G MTRR Missense_Mutation p.S19G 0.30 tolerated_low_confidence(0.86) benign(0.004) TCGA-77-8009-01 6 107390748 107390748 G T BEND3 Silent p.P549P 0.12 TCGA-77-8009-01 6 129959667 129959667 G C ARHGAP18 Missense_Mutation p.R142G 0.04 deleterious(0) probably_damaging(0.96) TCGA-77-8009-01 6 165711530 165711530 G T C6orf118 Missense_Mutation p.L333I 0.75 deleterious(0.02) benign(0.245) TCGA-77-8009-01 6 31827440 31827440 C A NEU1 3'UTR 0.91 TCGA-77-8009-01 6 34507026 34507026 C T SPDEF Splice_Site p.X277_splice 0.77 TCGA-77-8009-01 6 345870 345870 G T DUSP22 Nonsense_Mutation p.E69* 0.12 TCGA-77-8009-01 6 56480813 56480813 G T DST Intron 0.61 TCGA-77-8009-01 6 99323539 99323539 T C FBXL4 Missense_Mutation p.D485G 0.06 deleterious(0.01) benign(0.11) TCGA-77-8009-01 7 126883339 126883339 C T GRM8 5'UTR 0.31 TCGA-77-8009-01 7 133933810 133933810 G A LRGUK Missense_Mutation p.G727E 0.42 tolerated(0.15) benign(0.006) TCGA-77-8009-01 7 139168195 139168195 G T KLRG2 Nonsense_Mutation p.S65* 0.30 TCGA-77-8009-01 7 142334690 142334690 C A TRBV20-1 Missense_Mutation p.R38S 0.30 tolerated(0.29) possibly_damaging(0.569) TCGA-77-8009-01 7 15652207 15652207 C A MEOX2 Missense_Mutation p.M240I 0.47 deleterious(0) probably_damaging(0.954) TCGA-77-8009-01 7 38475918 38475918 A C AMPH Missense_Mutation p.V363G 0.14 deleterious(0.01) benign(0.14) TCGA-77-8009-01 7 39503821 39503821 G T POU6F2 Missense_Mutation p.A538S 0.45 tolerated_low_confidence(0.08) unknown(0) TCGA-77-8009-01 7 40039065 40039065 C T CDK13 Silent p.Y716Y 0.26 TCGA-77-8009-01 7 44737335 44737335 G - OGDH Frame_Shift_Del p.Q772Rfs*83 0.27 TCGA-77-8009-01 7 4780605 4780605 G A FOXK1 Missense_Mutation p.D233N 0.38 tolerated(0.68) benign(0.008) TCGA-77-8009-01 7 63721220 63721220 G A ZNF679 Missense_Mutation p.V59I 0.53 tolerated(0.22) benign(0.005) TCGA-77-8009-01 7 86493726 86493726 C T GRM3 3'UTR 0.36 TCGA-77-8009-01 7 909005 909005 A G SUN1 Missense_Mutation p.N667S 0.09 deleterious(0.02) probably_damaging(0.916) TCGA-77-8009-01 8 106801068 106801068 T C ZFPM2 Missense_Mutation p.Y219H 0.69 deleterious(0) probably_damaging(0.998) TCGA-77-8009-01 8 125107241 125107241 C T FER1L6 Missense_Mutation p.R1553W 0.21 deleterious(0) probably_damaging(0.972) TCGA-77-8009-01 8 136554941 136554941 G A KHDRBS3 Silent p.L84L 0.13 TCGA-77-8009-01 8 25899691 25899691 C G EBF2 Missense_Mutation p.V70L 0.81 deleterious(0.02) possibly_damaging(0.876) TCGA-77-8009-01 8 35453077 35453077 C A UNC5D Silent p.R158R 0.76 TCGA-77-8009-01 8 41583387 41583387 G C ANK1 Silent p.T201T 0.69 TCGA-77-8009-01 8 55540107 55540107 A GGT RP1 Frame_Shift_Ins p.K1222Rfs*34 0.18 TCGA-77-8009-01 8 59727953 59727953 C A TOX Missense_Mutation p.G446W 0.28 deleterious(0.01) possibly_damaging(0.577) TCGA-77-8009-01 8 85441620 85441620 C A RALYL Missense_Mutation p.R35S 0.38 deleterious(0) probably_damaging(0.998) TCGA-77-8009-01 9 100120007 100120008 CG T CCDC180 Splice_Site p.X1165_splice 0.14 TCGA-77-8009-01 9 100881444 100881444 C T TRIM14 Silent p.R9R 0.13 TCGA-77-8009-01 9 112898775 112898788 GGTGGGCGGCCTAA - PALM2-AKAP2 Frame_Shift_Del p.V318Pfs*13 0.20 TCGA-77-8009-01 9 122001020 122001020 C A BRINP1 Missense_Mutation p.G200W 0.49 deleterious(0) probably_damaging(0.995) TCGA-77-8009-01 9 130742296 130742296 C G FAM102A Missense_Mutation p.G41R 0.31 deleterious(0) probably_damaging(0.97) TCGA-77-8009-01 9 137630639 137630639 G T COL5A1 Silent p.G493G 0.29 TCGA-77-8009-01 9 138642021 138642021 C T KCNT1 Missense_Mutation p.S111L 0.19 deleterious(0) benign(0.283) TCGA-77-8009-01 9 21974760 21974760 C G CDKN2A Missense_Mutation p.G23R 0.60 deleterious(0) possibly_damaging(0.506) TCGA-77-8009-01 9 23701398 23701398 G A ELAVL2 Missense_Mutation p.A231V 0.20 tolerated(0.12) benign(0.028) TCGA-77-8009-01 9 33265140 33265140 G A CHMP5 Missense_Mutation p.G22S 0.27 tolerated(1) benign(0.004) TCGA-77-8009-01 X 10058940 10058946 TGTAAGC - WWC3 Splice_Site p.X169_splice 0.19 TCGA-77-8009-01 X 75395353 75395353 G A PBDC1 Missense_Mutation p.D68N 0.11 deleterious(0.01) possibly_damaging(0.85) TCGA-77-8009-01 X 82763950 82763950 C T POU3F4 Silent p.I206I 0.23 TCGA-77-8009-01 X 86872992 86872992 T A KLHL4 Missense_Mutation p.L262Q 0.13 deleterious(0) probably_damaging(0.995) TCGA-77-8009-01 X 99919807 99919807 G T SRPX2 Missense_Mutation p.G131V 0.26 deleterious(0) probably_damaging(0.985) TCGA-77-8009-01 Y 24050226 24050226 C A RBMY1E Silent p.S436S 0.50 TCGA-77-8128-01 10 100380455 100380455 G A HPSE2 Missense_Mutation p.T370I 0.21 tolerated(0.15) benign(0.345) TCGA-77-8128-01 10 104174866 104174866 A T PSD Missense_Mutation p.L293Q 0.46 deleterious(0) possibly_damaging(0.684) TCGA-77-8128-01 10 104849507 104849507 G C NT5C2 Silent p.L536L 0.43 TCGA-77-8128-01 10 115381671 115381671 A T NRAP Missense_Mutation p.M909K 0.20 deleterious(0) benign(0.206) TCGA-77-8128-01 10 132891399 132891399 C T TCERG1L 3'UTR 0.09 TCGA-77-8128-01 10 135369362 135369362 C T SYCE1 Missense_Mutation p.C214Y 0.64 tolerated(1) benign(0.013) TCGA-77-8128-01 10 16949625 16949625 A T CUBN Missense_Mutation p.S2529R 0.26 tolerated(0.28) benign(0.013) TCGA-77-8128-01 10 16989254 16989254 G T CUBN Missense_Mutation p.N1774K 0.27 deleterious(0) probably_damaging(0.954) TCGA-77-8128-01 10 38654523 38654523 G A HSD17B7P2 RNA 0.18 TCGA-77-8128-01 10 62547988 62547988 G A CDK1 Silent p.E163E 0.34 TCGA-77-8128-01 10 77807004 77807004 C T C10orf11 Missense_Mutation p.A86V 0.36 deleterious(0.01) possibly_damaging(0.55) TCGA-77-8128-01 10 84744950 84744950 A G NRG3 Silent p.Q560Q 0.53 TCGA-77-8128-01 10 86017689 86017689 G T RGR Missense_Mutation p.W228L 0.40 deleterious(0) probably_damaging(1) TCGA-77-8128-01 10 86017690 86017690 G T RGR Missense_Mutation p.W228C 0.40 deleterious(0) probably_damaging(1) TCGA-77-8128-01 11 114453632 114453632 G T NXPE4 Missense_Mutation p.L70I 0.29 tolerated(0.05) benign(0.021) TCGA-77-8128-01 11 119001529 119001529 C G HINFP Missense_Mutation p.H92Q 0.03 deleterious(0) probably_damaging(0.995) TCGA-77-8128-01 11 124267052 124267052 G A OR8B3 Missense_Mutation p.L66F 0.16 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-77-8128-01 11 124756682 124756682 G T ROBO4 Silent p.P824P 0.60 TCGA-77-8128-01 11 1269652 1269652 G A MUC5B Missense_Mutation p.G3848S 0.18 unknown(0) TCGA-77-8128-01 11 13514191 13514191 G T PTH Missense_Mutation p.Q37K 0.24 deleterious(0) possibly_damaging(0.897) TCGA-77-8128-01 11 15222476 15222476 G T INSC Missense_Mutation p.G314V 0.38 deleterious(0.02) possibly_damaging(0.827) TCGA-77-8128-01 11 1642966 1642966 C A KRTAP5-4 Missense_Mutation p.G120C 0.13 tolerated_low_confidence(0.29) unknown(0) TCGA-77-8128-01 11 17419240 17419240 G A ABCC8 Silent p.Y1286Y 0.52 TCGA-77-8128-01 11 28232740 28232740 G A METTL15 Silent p.L134L 0.24 TCGA-77-8128-01 11 30033224 30033224 G A KCNA4 Silent p.D334D 0.50 TCGA-77-8128-01 11 43918826 43918826 G T ALKBH3 Intron 0.33 TCGA-77-8128-01 11 50003677 50003677 A T OR4C12 Missense_Mutation p.Y121N 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-77-8128-01 11 5322849 5322849 C G OR51B4 Missense_Mutation p.G110R 0.25 deleterious(0.01) probably_damaging(0.916) TCGA-77-8128-01 11 5410706 5410706 C A OR51M1 Silent p.L26L 0.30 TCGA-77-8128-01 11 5411160 5411160 T C OR51M1 Missense_Mutation p.F178L 0.27 tolerated(1) benign(0.009) TCGA-77-8128-01 11 55594805 55594805 C T OR5L2 Silent p.V37V 0.25 TCGA-77-8128-01 11 55595034 55595034 C T OR5L2 Silent p.L114L 0.20 TCGA-77-8128-01 11 57958342 57958342 G T OR9Q2 Missense_Mutation p.C127F 0.25 deleterious(0.01) possibly_damaging(0.704) TCGA-77-8128-01 11 58190107 58190107 G T OR5B2 Missense_Mutation p.L210I 0.25 tolerated_low_confidence(0.2) benign(0.05) TCGA-77-8128-01 11 58275474 58275474 G A OR5B21 Silent p.I35I 0.24 TCGA-77-8128-01 11 58980092 58980092 C T MPEG1 Missense_Mutation p.E83K 0.07 deleterious(0) possibly_damaging(0.662) TCGA-77-8128-01 11 59807958 59807958 T C OOSP2 Missense_Mutation p.L9P 0.31 deleterious(0) unknown(0) TCGA-77-8128-01 11 6008014 6008014 C A OR52L1 Silent p.L49L 0.11 TCGA-77-8128-01 11 64001393 64001393 C G DNAJC4 Missense_Mutation p.F185L 0.53 deleterious(0) probably_damaging(0.999) TCGA-77-8128-01 11 66031403 66031403 G T KLC2 Missense_Mutation p.A308S 0.48 deleterious(0.02) possibly_damaging(0.875) TCGA-77-8128-01 11 6913572 6913572 G T OR2D2 Missense_Mutation p.Q54K 0.19 tolerated(0.28) benign(0.006) TCGA-77-8128-01 11 7509558 7509558 G A OLFML1 Silent p.E110E 0.30 TCGA-77-8128-01 11 85956300 85956300 C G EED Missense_Mutation p.P10R 0.10 tolerated_low_confidence(0.13) benign(0.008) TCGA-77-8128-01 11 92590503 92590503 G A FAT3 Missense_Mutation p.G3830E 0.51 probably_damaging(0.967) TCGA-77-8128-01 12 101477511 101477511 C T ANO4 Missense_Mutation p.P449L 0.40 deleterious(0) probably_damaging(0.991) TCGA-77-8128-01 12 101880319 101880319 C T SPIC Missense_Mutation p.L173F 0.22 deleterious(0) probably_damaging(1) TCGA-77-8128-01 12 108589597 108589597 G T WSCD2 5'UTR 0.36 TCGA-77-8128-01 12 113599739 113599739 T C DDX54 Silent p.T753T 0.38 TCGA-77-8128-01 12 114374837 114374837 T C RBM19 Silent p.E681E 0.38 TCGA-77-8128-01 12 121947817 121947820 GTCT - KDM2B Frame_Shift_Del p.I399Mfs*82 0.41 TCGA-77-8128-01 12 129569058 129569058 T C TMEM132D Missense_Mutation p.I545V 0.30 tolerated(0.54) benign(0.045) TCGA-77-8128-01 12 15262125 15262125 C A RERG Silent p.V173V 0.33 TCGA-77-8128-01 12 21457486 21457486 G T SLCO1A2 Nonsense_Mutation p.S155* 0.18 TCGA-77-8128-01 12 23893904 23893904 C A SOX5 Missense_Mutation p.R213L 0.25 deleterious(0) probably_damaging(0.994) TCGA-77-8128-01 12 26810743 26810743 A G ITPR2 Missense_Mutation p.W697R 0.45 deleterious(0) probably_damaging(0.984) TCGA-77-8128-01 12 48723058 48723058 C T H1FNT 5'UTR 0.29 TCGA-77-8128-01 12 49427450 49427450 G A KMT2D Nonsense_Mutation p.Q3680* 0.46 TCGA-77-8128-01 12 5153641 5153641 C A KCNA5 Missense_Mutation p.Q110K 0.17 tolerated(0.38) benign(0.014) TCGA-77-8128-01 12 54059080 54059080 G T ATP5G2 3'UTR 0.45 TCGA-77-8128-01 12 56755496 56755496 G C APOF Missense_Mutation p.S165C 0.22 deleterious(0.01) possibly_damaging(0.9) TCGA-77-8128-01 12 56848294 56848294 G T MIP Missense_Mutation p.A35D 0.44 deleterious(0.01) benign(0.081) TCGA-77-8128-01 12 78516023 78516023 C A NAV3 Missense_Mutation p.S1351R 0.30 deleterious(0.03) probably_damaging(0.953) TCGA-77-8128-01 12 81648674 81648674 C A ACSS3 Missense_Mutation p.H678Q 0.24 deleterious(0.02) benign(0.003) TCGA-77-8128-01 12 9353015 9353015 C A PZP Missense_Mutation p.V234L 0.25 tolerated(0.37) benign(0.323) TCGA-77-8128-01 12 95604958 95604958 G T FGD6 Silent p.P34P 0.35 TCGA-77-8128-01 13 103343283 103343283 G C METTL21C Missense_Mutation p.S54R 0.32 tolerated(0.37) possibly_damaging(0.634) TCGA-77-8128-01 13 108518550 108518550 G A FAM155A Missense_Mutation p.P132L 0.54 deleterious_low_confidence(0.04) probably_damaging(0.998) TCGA-77-8128-01 13 109792609 109792609 C A MYO16 Intron 0.51 TCGA-77-8128-01 13 110866326 110866326 C A COL4A1 Missense_Mutation p.G61W 0.19 unknown(0) TCGA-77-8128-01 13 28367966 28367966 C A GSX1 Missense_Mutation p.P226T 0.65 tolerated(0.8) benign(0.003) TCGA-77-8128-01 13 32841458 32841458 G T FRY Missense_Mutation p.A2700S 0.71 tolerated(0.19) benign(0.362) TCGA-77-8128-01 13 42763255 42763255 C T DGKH Silent p.L574L 0.53 TCGA-77-8128-01 13 45523895 45523895 C A NUFIP1 Missense_Mutation p.S367I 0.06 deleterious(0.01) benign(0.219) TCGA-77-8128-01 13 80113895 80113895 A T NDFIP2 Missense_Mutation p.M234L 0.20 tolerated(0.07) possibly_damaging(0.534) TCGA-77-8128-01 13 94197638 94197638 C A GPC6 Missense_Mutation p.R95S 0.46 deleterious(0) benign(0.107) TCGA-77-8128-01 13 99116092 99116092 T C STK24 Splice_Site p.X274_splice 0.27 TCGA-77-8128-01 14 107170380 107170380 T C IGHV1-69 5'UTR 0.69 TCGA-77-8128-01 14 22192115 22192115 G T TRAV3 5'UTR 0.69 TCGA-77-8128-01 14 71267770 71267770 G A MAP3K9 Missense_Mutation p.T145I 0.23 tolerated(0.29) benign(0.073) TCGA-77-8128-01 14 97009157 97009157 G A PAPOLA Missense_Mutation p.E406K 0.06 deleterious(0) probably_damaging(0.999) TCGA-77-8128-01 15 100230541 100230541 C G MEF2A Missense_Mutation p.P258A 0.54 deleterious(0.01) probably_damaging(0.981) TCGA-77-8128-01 15 23889572 23889572 G T MAGEL2 Missense_Mutation p.D503E 0.38 tolerated(0.19) benign(0.106) TCGA-77-8128-01 15 25436448 25436448 G C SNORD115-11 3'Flank 0.19 TCGA-77-8128-01 15 26793199 26793199 G T GABRB3 Missense_Mutation p.T388N 0.44 tolerated(0.43) benign(0.131) TCGA-77-8128-01 15 29385349 29385349 C A APBA2 Missense_Mutation p.Q381K 0.43 deleterious(0) probably_damaging(0.96) TCGA-77-8128-01 15 33855189 33855189 G A RYR3 Missense_Mutation p.R375H 0.45 probably_damaging(0.991) TCGA-77-8128-01 15 34130274 34130274 C A RYR3 Silent p.R4031R 0.21 TCGA-77-8128-01 15 40265916 40265916 T G EIF2AK4 Missense_Mutation p.L595R 0.44 deleterious(0.01) possibly_damaging(0.76) TCGA-77-8128-01 15 50550619 50550619 G T HDC Missense_Mutation p.N100K 0.20 deleterious(0.04) probably_damaging(0.992) TCGA-77-8128-01 15 50888530 50888530 C A TRPM7 Missense_Mutation p.W1071L 0.32 deleterious(0) probably_damaging(0.985) TCGA-77-8128-01 15 54025231 54025231 C T WDR72 Missense_Mutation p.G39D 0.22 deleterious(0) probably_damaging(1) TCGA-77-8128-01 15 57816932 57816932 A T CGNL1 Missense_Mutation p.M1008L 0.21 tolerated(0.31) benign(0.001) TCGA-77-8128-01 15 74426532 74426532 C T ISLR2 Silent p.L479L 0.56 TCGA-77-8128-01 15 77057783 77057783 C A SCAPER Missense_Mutation p.W503L 0.40 deleterious(0.03) probably_damaging(0.991) TCGA-77-8128-01 15 88423546 88423546 G T NTRK3 Silent p.I763I 0.25 TCGA-77-8128-01 16 14693775 14693775 C T PARN Missense_Mutation p.A276T 0.21 tolerated(0.07) possibly_damaging(0.892) TCGA-77-8128-01 16 2090156 2090156 C T NTHL1 Missense_Mutation p.A265T 0.23 deleterious(0.02) possibly_damaging(0.523) TCGA-77-8128-01 16 20976074 20976074 C T DNAH3 Silent p.T3044T 0.47 TCGA-77-8128-01 16 29912635 29912635 G T ASPHD1 Missense_Mutation p.V115F 0.20 tolerated(0.1) benign(0.056) TCGA-77-8128-01 16 31089176 31089176 G T ZNF646 Missense_Mutation p.V511L 0.18 deleterious(0.02) probably_damaging(0.988) TCGA-77-8128-01 16 3778556 3778556 C G CREBBP Silent p.L2164L 0.28 TCGA-77-8128-01 16 46697009 46697009 C G VPS35 Missense_Mutation p.L571F 0.23 deleterious(0.02) possibly_damaging(0.84) TCGA-77-8128-01 16 49669855 49669855 G A ZNF423 Missense_Mutation p.L1070F 0.22 tolerated(0.05) probably_damaging(0.993) TCGA-77-8128-01 16 55364324 55364324 C T IRX6 3'UTR 0.25 TCGA-77-8128-01 16 55583256 55583256 C T LPCAT2 Silent p.L335L 0.47 TCGA-77-8128-01 16 61687721 61687721 C A CDH8 Nonsense_Mutation p.E731* 0.26 TCGA-77-8128-01 16 67264520 67264520 G A FHOD1 Missense_Mutation p.R948C 0.19 deleterious(0) probably_damaging(0.997) TCGA-77-8128-01 16 67268026 67268026 T C FHOD1 Missense_Mutation p.E527G 0.21 deleterious(0.02) benign(0.05) TCGA-77-8128-01 16 71823360 71823360 C T AP1G1 Missense_Mutation p.R8Q 0.40 tolerated(0.37) probably_damaging(0.955) TCGA-77-8128-01 16 75563670 75563670 C T CHST5 Missense_Mutation p.V205M 0.07 deleterious(0.03) probably_damaging(0.997) TCGA-77-8128-01 16 75633989 75633989 A G ADAT1 3'UTR 0.38 TCGA-77-8128-01 16 76509934 76509934 G C CNTNAP4 Missense_Mutation p.C512S 0.26 deleterious(0) probably_damaging(0.998) TCGA-77-8128-01 16 76556126 76556126 G C CNTNAP4 Silent p.L836L 0.41 TCGA-77-8128-01 16 82131894 82131894 G A HSD17B2 Silent p.T339T 0.48 TCGA-77-8128-01 16 84217039 84217039 C T TAF1C Missense_Mutation p.V99I 0.24 deleterious(0.01) possibly_damaging(0.466) TCGA-77-8128-01 16 85838673 85838673 C G COX4I1 Silent p.A68A 0.40 TCGA-77-8128-01 16 90072838 90072838 C T DBNDD1 Missense_Mutation p.E148K 0.29 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-77-8128-01 17 18027827 18027827 C T MYO15A Missense_Mutation p.R1214W 0.05 unknown(0) TCGA-77-8128-01 17 1840309 1840309 C T RTN4RL1 Nonsense_Mutation p.W269* 0.70 TCGA-77-8128-01 17 29203497 29203497 C G ATAD5 Missense_Mutation p.A1238G 0.12 deleterious(0) probably_damaging(0.927) TCGA-77-8128-01 17 32612875 32612875 C T CCL11 Silent p.A16A 0.31 TCGA-77-8128-01 17 3392623 3392623 T A ASPA Missense_Mutation p.H207Q 0.78 tolerated(0.48) benign(0.003) TCGA-77-8128-01 17 34499324 34499324 C A TBC1D3B Splice_Site p.X130_splice 0.17 TCGA-77-8128-01 17 38546377 38546377 G T TOP2A Missense_Mutation p.A1436D 0.14 tolerated_low_confidence(0.25) possibly_damaging(0.568) TCGA-77-8128-01 17 40766638 40766638 G A TUBG1 Missense_Mutation p.S374N 0.45 tolerated(0.08) benign(0.049) TCGA-77-8128-01 17 43010136 43010136 G T KIF18B Silent p.A381A 0.20 TCGA-77-8128-01 17 43912190 43912190 C A CRHR1 3'UTR 0.19 TCGA-77-8128-01 17 44950057 44950057 C T WNT9B Silent p.L84L 0.42 TCGA-77-8128-01 17 49074051 49074051 C A SPAG9 Nonsense_Mutation p.E615* 0.19 TCGA-77-8128-01 17 60464763 60464763 C T EFCAB3 Missense_Mutation p.A98V 0.26 tolerated(0.17) benign(0.076) TCGA-77-8128-01 17 64026054 64026054 G A CEP112 Nonsense_Mutation p.Q436* 0.30 TCGA-77-8128-01 17 66982412 66982412 G T ABCA9 Nonsense_Mutation p.C1367* 0.19 TCGA-77-8128-01 17 6940190 6940190 G A SLC16A13 Splice_Site p.X115_splice 0.66 TCGA-77-8128-01 17 73657720 73657720 G A RECQL5 Silent p.S280S 0.57 TCGA-77-8128-01 17 74134160 74134160 G C FOXJ1 Missense_Mutation p.I180M 0.13 tolerated(0.19) possibly_damaging(0.575) TCGA-77-8128-01 17 7577118 7577118 C A TP53 Missense_Mutation p.V274F 0.73 deleterious(0.03) benign(0.275) TCGA-77-8128-01 18 23724628 23724628 C A PSMA8 Missense_Mutation p.H70N 0.41 tolerated(0.15) probably_damaging(0.999) TCGA-77-8128-01 18 23866022 23866022 T G TAF4B Silent p.S383S 0.16 TCGA-77-8128-01 18 42530013 42530013 C T SETBP1 Silent p.F236F 0.47 TCGA-77-8128-01 18 44260052 44260052 T A ST8SIA5 Missense_Mutation p.S362C 0.40 probably_damaging(0.951) TCGA-77-8128-01 18 50278652 50278652 A G DCC Missense_Mutation p.H107R 0.29 deleterious(0.01) benign(0.073) TCGA-77-8128-01 18 50866200 50866200 G A DCC Missense_Mutation p.G761D 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-77-8128-01 18 6239726 6239726 T C L3MBTL4 Missense_Mutation p.Y233C 0.12 deleterious(0.02) benign(0.03) TCGA-77-8128-01 18 63530072 63530072 A C CDH7 Missense_Mutation p.N595H 0.57 tolerated(0.14) benign(0.009) TCGA-77-8128-01 18 66504364 66504364 C A CCDC102B Missense_Mutation p.Q122K 0.10 deleterious(0.01) possibly_damaging(0.831) TCGA-77-8128-01 18 74962870 74962870 C T GALR1 Silent p.S122S 0.44 TCGA-77-8128-01 18 8370931 8370931 A C PTPRM Missense_Mutation p.K1033T 0.45 deleterious(0) benign(0.098) TCGA-77-8128-01 18 909719 909719 G A ADCYAP1 3'UTR 0.38 TCGA-77-8128-01 19 13010782 13010782 G C GCDH 3'UTR 0.41 TCGA-77-8128-01 19 17305676 17305676 A G MYO9B Missense_Mutation p.K1147R 0.46 deleterious(0.03) probably_damaging(0.998) TCGA-77-8128-01 19 1823778 1823778 G A REXO1 Missense_Mutation p.P675S 0.22 tolerated(0.1) benign(0.219) TCGA-77-8128-01 19 18879539 18879539 C A CRTC1 Missense_Mutation p.S435Y 0.57 deleterious_low_confidence(0.01) possibly_damaging(0.575) TCGA-77-8128-01 19 22939294 22939294 A G ZNF99 3'Flank 0.43 TCGA-77-8128-01 19 24310352 24310352 C A ZNF254 Missense_Mutation p.P517H 0.12 deleterious(0.01) possibly_damaging(0.688) TCGA-77-8128-01 19 31767440 31767440 T C TSHZ3 3'UTR 0.53 TCGA-77-8128-01 19 31768560 31768560 C T TSHZ3 Silent p.P713P 0.10 TCGA-77-8128-01 19 32873819 32873819 A T ZNF507 Missense_Mutation p.S898C 0.24 deleterious(0.03) benign(0.237) TCGA-77-8128-01 19 35836548 35836548 G A CD22 Missense_Mutation p.C751Y 0.55 tolerated(0.08) benign(0.295) TCGA-77-8128-01 19 40434147 40434147 A G FCGBP Missense_Mutation p.L41P 0.07 possibly_damaging(0.737) TCGA-77-8128-01 19 43228096 43228096 G C PSG3 Intron 0.63 TCGA-77-8128-01 19 49558225 49558225 C A CGB7 Missense_Mutation p.W19L 0.50 tolerated(0.18) possibly_damaging(0.598) TCGA-77-8128-01 19 49901295 49901295 G T CCDC155 Missense_Mutation p.R175L 0.71 deleterious(0) possibly_damaging(0.851) TCGA-77-8128-01 19 50155256 50155256 C T SCAF1 Missense_Mutation p.S537L 0.70 unknown(0) TCGA-77-8128-01 19 51827066 51827066 G T IGLON5 Silent p.G103G 0.64 TCGA-77-8128-01 19 53473396 53473396 T G ZNF702P RNA 0.62 TCGA-77-8128-01 19 55086927 55086927 C A LILRA2 Missense_Mutation p.P287H 0.62 tolerated(0.49) benign(0.005) TCGA-77-8128-01 19 55401039 55401039 C A FCAR Missense_Mutation p.T225K 0.63 deleterious(0.04) benign(0.084) TCGA-77-8128-01 19 55667651 55667651 T C TNNI3 Missense_Mutation p.E67G 0.19 tolerated(0.08) benign(0.273) TCGA-77-8128-01 19 56481930 56481930 C A NLRP8 Missense_Mutation p.T801N 0.61 tolerated(0.08) benign(0.014) TCGA-77-8128-01 19 58046537 58046537 C T ZNF549 Missense_Mutation p.A33V 0.69 deleterious(0.04) benign(0.424) TCGA-77-8128-01 19 694935 694935 C G PRSS57 Missense_Mutation p.E39Q 0.17 tolerated(0.05) possibly_damaging(0.782) TCGA-77-8128-01 19 7711190 7711190 A T STXBP2 Missense_Mutation p.Q471L 0.18 deleterious(0.02) possibly_damaging(0.711) TCGA-77-8128-01 19 9048799 9048799 C A MUC16 Silent p.V10944V 0.57 TCGA-77-8128-01 1 103540289 103540294 ATCATT - COL11A1 In_Frame_Del p.M178_I179del 0.48 TCGA-77-8128-01 1 104162243 104162243 T - AMY2A Frame_Shift_Del p.I194Mfs*5 0.25 TCGA-77-8128-01 1 152285578 152285578 G T FLG Missense_Mutation p.A595D 0.15 probably_damaging(0.99) TCGA-77-8128-01 1 152286280 152286280 G C FLG Missense_Mutation p.A361G 0.18 benign(0.168) TCGA-77-8128-01 1 154996370 154996370 C T DCST2 Missense_Mutation p.G603E 0.31 deleterious(0.01) benign(0.352) TCGA-77-8128-01 1 158606506 158606506 A T SPTA1 Silent p.L1745L 0.79 TCGA-77-8128-01 1 159778999 159778999 C A FCRL6 Missense_Mutation p.Q190K 0.69 deleterious(0.05) benign(0.113) TCGA-77-8128-01 1 165175129 165175129 C A LMX1A Missense_Mutation p.Q320H 0.17 deleterious(0) probably_damaging(0.984) TCGA-77-8128-01 1 178753587 178753587 G A RALGPS2 Missense_Mutation p.G31D 0.81 tolerated(0.08) benign(0.262) TCGA-77-8128-01 1 192985418 192985418 T C UCHL5 3'UTR 0.78 TCGA-77-8128-01 1 197169578 197169578 G C ZBTB41 Nonsense_Mutation p.S9* 0.57 TCGA-77-8128-01 1 21299553 21299553 G A EIF4G3 Missense_Mutation p.A129V 0.27 deleterious(0.04) probably_damaging(0.995) TCGA-77-8128-01 1 215901671 215901671 G T USH2A Missense_Mutation p.L3923I 0.81 possibly_damaging(0.902) TCGA-77-8128-01 1 230415178 230415178 A T GALNT2 Nonsense_Mutation p.K564* 0.18 TCGA-77-8128-01 1 242159547 242159547 G C MAP1LC3C Missense_Mutation p.S121C 0.24 deleterious(0) probably_damaging(1) TCGA-77-8128-01 1 248028155 248028155 T A TRIM58 Missense_Mutation p.L222Q 0.70 deleterious(0) probably_damaging(0.954) TCGA-77-8128-01 1 248129576 248129576 G T OR2AK2 Missense_Mutation p.A315S 0.15 deleterious(0) possibly_damaging(0.698) TCGA-77-8128-01 1 41473141 41473141 C T CTPS1 Silent p.H439H 0.31 TCGA-77-8128-01 1 55527131 55527131 G A PCSK9 Missense_Mutation p.V589M 0.22 deleterious(0.04) benign(0.016) TCGA-77-8128-01 1 6648819 6648819 T C ZBTB48 Missense_Mutation p.V562A 0.74 tolerated(0.15) benign(0.176) TCGA-77-8128-01 1 74671126 74671126 G A FPGT Silent p.K465K 0.68 TCGA-77-8128-01 1 78031825 78031825 C A ZZZ3 Missense_Mutation p.W836C 0.57 deleterious(0.02) probably_damaging(1) TCGA-77-8128-01 1 89449067 89449067 G T RBMXL1 Missense_Mutation p.P148Q 0.53 deleterious(0.01) probably_damaging(0.987) TCGA-77-8128-01 1 905734 905734 G T PLEKHN1 Missense_Mutation p.R87S 0.62 tolerated(0.14) benign(0.166) TCGA-77-8128-01 20 126127 126127 C A DEFB126 Missense_Mutation p.H44N 0.24 tolerated(0.53) benign(0.001) TCGA-77-8128-01 20 19945656 19945656 A T RIN2 Missense_Mutation p.Y224F 0.50 deleterious(0.02) probably_damaging(0.958) TCGA-77-8128-01 20 29965025 29965025 C A DEFB118 3'Flank 0.32 TCGA-77-8128-01 20 31022350 31022350 G - ASXL1 Frame_Shift_Del p.T613Pfs*90 0.32 TCGA-77-8128-01 20 32336861 32336861 G T ZNF341 Missense_Mutation p.G158C 0.18 tolerated(0.11) possibly_damaging(0.745) TCGA-77-8128-01 20 33570341 33570341 G A MYH7B Missense_Mutation p.G245R 0.26 benign(0.134) TCGA-77-8128-01 20 49219003 49219003 G C FAM65C Missense_Mutation p.T418R 0.15 deleterious(0.01) probably_damaging(0.94) TCGA-77-8128-01 21 22707927 22707927 C G NCAM2 Silent p.V280V 0.34 TCGA-77-8128-01 21 35468758 35468758 A G SLC5A3 Missense_Mutation p.I421V 0.43 tolerated(0.83) benign(0.005) TCGA-77-8128-01 21 43161411 43161411 C A RIPK4 Missense_Mutation p.G648W 0.77 deleterious(0) probably_damaging(1) TCGA-77-8128-01 21 46074563 46074563 G A KRTAP12-4 5'UTR 0.56 TCGA-77-8128-01 22 18367096 18367096 G C MICAL3 Intron 0.13 TCGA-77-8128-01 22 18609739 18609740 - T TUBA8 Frame_Shift_Ins p.A333Cfs*88 0.16 TCGA-77-8128-01 22 22317201 22317201 G A TOP3B Silent p.D423D 0.72 TCGA-77-8128-01 22 22869569 22869569 G T ZNF280A Nonsense_Mutation p.S129* 0.19 TCGA-77-8128-01 22 24560401 24560401 C T CABIN1 Missense_Mutation p.R1594W 0.03 deleterious(0) possibly_damaging(0.708) TCGA-77-8128-01 22 27008142 27008142 C T CRYBB1 Missense_Mutation p.E65K 0.27 deleterious(0) probably_damaging(0.963) TCGA-77-8128-01 22 27021515 27021515 T A CRYBA4 Missense_Mutation p.W77R 0.22 deleterious(0.01) possibly_damaging(0.897) TCGA-77-8128-01 22 30228323 30228323 G C ASCC2 5'UTR 0.08 TCGA-77-8128-01 22 31302137 31302137 G C OSBP2 Intron 0.10 TCGA-77-8128-01 22 31795546 31795546 G - DRG1 5'UTR 0.12 TCGA-77-8128-01 22 32200185 32200185 G A DEPDC5 Silent p.P373P 0.16 TCGA-77-8128-01 22 32239680 32239680 T A DEPDC5 Missense_Mutation p.S886T 0.11 deleterious(0.01) benign(0.075) TCGA-77-8128-01 22 32914065 32914065 C G SYN3 Missense_Mutation p.E525D 0.16 tolerated(0.58) benign(0.316) TCGA-77-8128-01 22 37334200 37334200 C T CSF2RB Missense_Mutation p.P784S 0.35 tolerated(0.08) benign(0.174) TCGA-77-8128-01 22 37531426 37531426 C G IL2RB Missense_Mutation p.A254P 0.22 tolerated(0.12) benign(0.149) TCGA-77-8128-01 22 38690354 38690354 G T CSNK1E Missense_Mutation p.P358T 0.27 tolerated_low_confidence(0.6) benign(0.014) TCGA-77-8128-01 22 41752404 41752404 C G ZC3H7B Missense_Mutation p.P814R 0.17 tolerated(0.81) possibly_damaging(0.786) TCGA-77-8128-01 22 41973920 41973920 C T PMM1 Missense_Mutation p.M186I 0.16 deleterious(0) benign(0.066) TCGA-77-8128-01 22 44692599 44692599 C A KIAA1644 Silent p.A78A 0.14 TCGA-77-8128-01 2 125504849 125504849 G T CNTNAP5 Missense_Mutation p.R706S 0.81 tolerated(0.39) benign(0.04) TCGA-77-8128-01 2 125521360 125521360 G T CNTNAP5 Missense_Mutation p.L781F 0.68 deleterious(0) probably_damaging(0.993) TCGA-77-8128-01 2 133542100 133542100 T A NCKAP5 Missense_Mutation p.R762W 0.74 deleterious(0) probably_damaging(0.927) TCGA-77-8128-01 2 135075140 135075140 T A MGAT5 Silent p.P149P 0.68 TCGA-77-8128-01 2 141214097 141214097 G T LRP1B Missense_Mutation p.T3297N 0.22 benign(0.002) TCGA-77-8128-01 2 176982254 176982254 C A HOXD10 Nonsense_Mutation p.C231* 0.83 TCGA-77-8128-01 2 176982255 176982255 C A HOXD10 Missense_Mutation p.L232M 0.83 tolerated(0.23) benign(0.01) TCGA-77-8128-01 2 179476138 179476138 A G TTN Missense_Mutation p.S16940P 0.70 TCGA-77-8128-01 2 179577935 179577935 G T TTN Missense_Mutation p.L8976M 0.59 TCGA-77-8128-01 2 179587265 179587265 G C TTN Missense_Mutation p.L7417V 0.74 TCGA-77-8128-01 2 212652803 212652803 C T ERBB4 Missense_Mutation p.R168Q 0.71 tolerated(0.31) benign(0.003) TCGA-77-8128-01 2 234229331 234229331 C A SAG Silent p.I79I 0.62 TCGA-77-8128-01 2 237076592 237076592 G C GBX2 Missense_Mutation p.S8W 1.00 deleterious_low_confidence(0) possibly_damaging(0.815) TCGA-77-8128-01 2 27887306 27887306 G T SLC4A1AP Silent p.P229P 0.77 TCGA-77-8128-01 2 28788195 28788195 A G PLB1 Missense_Mutation p.T419A 0.65 deleterious(0.01) probably_damaging(0.977) TCGA-77-8128-01 2 31178596 31178596 C A GALNT14 Missense_Mutation p.R186L 0.11 deleterious(0) probably_damaging(0.982) TCGA-77-8128-01 2 31560510 31560510 G C XDH Silent p.T1316T 0.17 TCGA-77-8128-01 2 37456111 37456111 T A CEBPZ Silent p.A75A 0.69 TCGA-77-8128-01 2 51254778 51254778 C A NRXN1 Missense_Mutation p.G212C 0.77 tolerated(0.22) benign(0.01) TCGA-77-8128-01 2 6989851 6989851 C A CMPK2 3'UTR 0.65 TCGA-77-8128-01 2 73718142 73718142 T C ALMS1 Missense_Mutation p.V3018A 0.71 benign(0.031) TCGA-77-8128-01 2 84517940 84517940 G T FUNDC2P2 RNA 0.78 TCGA-77-8128-01 2 90259826 90259826 C A IGKV1D-8 Missense_Mutation p.P18Q 0.69 tolerated(0.08) benign(0.256) TCGA-77-8128-01 2 99778666 99778666 G T LIPT1 Missense_Mutation p.Q82H 0.62 tolerated(0.17) possibly_damaging(0.832) TCGA-77-8128-01 3 101177894 101177894 C T SENP7 Nonsense_Mutation p.W63* 0.14 TCGA-77-8128-01 3 108147610 108147610 T A MYH15 Missense_Mutation p.E1164V 0.44 deleterious(0.01) probably_damaging(0.95) TCGA-77-8128-01 3 120169566 120169566 G C FSTL1 Missense_Mutation p.L10V 0.45 tolerated(0.33) unknown(0) TCGA-77-8128-01 3 120394709 120394709 T C HGD Missense_Mutation p.Y6C 0.13 deleterious(0) probably_damaging(1) TCGA-77-8128-01 3 123019127 123019127 C T ADCY5 Missense_Mutation p.V914M 0.09 tolerated(0.09) benign(0.14) TCGA-77-8128-01 3 130095563 130095563 A G COL6A5 Missense_Mutation p.H184R 0.37 tolerated(0.11) benign(0.003) TCGA-77-8128-01 3 164710179 164710179 A G SI Silent p.F1616F 0.28 TCGA-77-8128-01 3 183822075 183822075 G T HTR3E Nonsense_Mutation p.E129* 0.06 TCGA-77-8128-01 3 184024221 184024221 G A PSMD2 Missense_Mutation p.D630N 0.03 tolerated(0.2) benign(0) TCGA-77-8128-01 3 186953987 186953987 G C MASP1 Missense_Mutation p.Q558E 0.72 tolerated(0.57) benign(0.001) TCGA-77-8128-01 3 2944658 2944658 T A CNTN4 Silent p.V392V 0.50 TCGA-77-8128-01 3 35730818 35730818 G A ARPP21 Silent p.T142T 0.21 TCGA-77-8128-01 3 44763649 44763649 A G ZNF502 Missense_Mutation p.N447S 0.56 tolerated(0.8) benign(0.018) TCGA-77-8128-01 3 46399358 46399358 A G CCR2 Missense_Mutation p.K114E 0.65 deleterious(0) possibly_damaging(0.904) TCGA-77-8128-01 3 53804516 53804516 G A CACNA1D Silent p.V1347V 0.53 TCGA-77-8128-01 3 64589672 64589672 G - ADAMTS9 Frame_Shift_Del p.L1225Cfs*12 0.24 TCGA-77-8128-01 3 67659983 67659983 T C SUCLG2 Missense_Mutation p.Q41R 0.55 deleterious(0.02) benign(0.122) TCGA-77-8128-01 3 8669448 8669448 C T SSUH2 Missense_Mutation p.G204R 0.31 deleterious(0.03) benign(0.135) TCGA-77-8128-01 3 89462314 89462314 T A EPHA3 Missense_Mutation p.Y596N 0.41 deleterious(0) probably_damaging(0.997) TCGA-77-8128-01 4 119951005 119951005 A T SYNPO2 Missense_Mutation p.R359W 0.57 deleterious(0) probably_damaging(0.999) TCGA-77-8128-01 4 129043117 129043117 A T LARP1B Missense_Mutation p.D433V 0.71 deleterious(0) probably_damaging(0.984) TCGA-77-8128-01 4 248029 248029 A T ZNF876P RNA 0.25 TCGA-77-8128-01 4 42145722 42145722 C A BEND4 Silent p.S259S 0.64 TCGA-77-8128-01 4 436072 436072 T A ZNF721 Missense_Mutation p.E728D 0.89 tolerated(0.25) benign(0.009) TCGA-77-8128-01 4 6055776 6055776 C G JAKMIP1 Splice_Site p.X602_splice 0.35 TCGA-77-8128-01 4 65147201 65147201 G C TECRL Nonsense_Mutation p.Y303* 0.61 TCGA-77-8128-01 4 66217278 66217278 G A EPHA5 Silent p.G779G 0.29 TCGA-77-8128-01 4 69681748 69681748 A C UGT2B10 Missense_Mutation p.K4T 0.59 deleterious(0.02) possibly_damaging(0.77) TCGA-77-8128-01 4 86916255 86916255 G A ARHGAP24 Missense_Mutation p.R483H 0.54 deleterious(0.01) possibly_damaging(0.869) TCGA-77-8128-01 4 96761669 96761669 A G PDHA2 Missense_Mutation p.Y123C 0.68 deleterious(0.01) probably_damaging(0.951) TCGA-77-8128-01 5 114499235 114499235 A T TRIM36 Missense_Mutation p.I93N 0.59 deleterious(0) possibly_damaging(0.583) TCGA-77-8128-01 5 139216769 139216769 T C PSD2 Silent p.R537R 0.61 TCGA-77-8128-01 5 150311237 150311237 T G ZNF300P1 RNA 0.38 TCGA-77-8128-01 5 161117258 161117258 A T GABRA6 Missense_Mutation p.Y242F 0.53 deleterious(0.05) probably_damaging(0.986) TCGA-77-8128-01 5 162900236 162900236 C G HMMR Silent p.L234L 0.60 TCGA-77-8128-01 5 175306997 175306997 C A CPLX2 Missense_Mutation p.D118E 0.67 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-77-8128-01 5 19520802 19520802 A T CDH18 Nonsense_Mutation p.Y492* 0.41 TCGA-77-8128-01 5 26915910 26915910 G T CDH9 Missense_Mutation p.D117E 0.24 deleterious(0) probably_damaging(0.986) TCGA-77-8128-01 5 34924996 34924996 T C BRIX1 Silent p.F236F 0.19 TCGA-77-8128-01 5 35965884 35965884 G A UGT3A1 Silent p.F149F 0.08 TCGA-77-8128-01 5 41153959 41153959 C A C6 Missense_Mutation p.G748V 0.23 tolerated(0.11) benign(0.331) TCGA-77-8128-01 5 41186248 41186248 A T C6 Missense_Mutation p.I217K 0.50 tolerated(0.93) benign(0.001) TCGA-77-8128-01 5 43547953 43547953 C T PAIP1 Silent p.L166L 0.10 TCGA-77-8128-01 5 77473162 77473162 C T AP3B1 Splice_Site p.X347_splice 0.45 TCGA-77-8128-01 5 9154675 9154675 C G SEMA5A Missense_Mutation p.S469T 0.19 tolerated(0.17) benign(0.007) TCGA-77-8128-01 5 9224863 9224863 C A SEMA5A Missense_Mutation p.R190L 0.40 deleterious(0.04) possibly_damaging(0.892) TCGA-77-8128-01 5 96503403 96503403 G T RIOK2 Silent p.R389R 0.60 TCGA-77-8128-01 6 123369854 123369854 C T CLVS2 Silent p.L218L 0.17 TCGA-77-8128-01 6 127469934 127469934 G C RSPO3 Missense_Mutation p.C80S 0.18 deleterious(0) probably_damaging(0.998) TCGA-77-8128-01 6 131914132 131914132 A C MED23 Intron 0.49 TCGA-77-8128-01 6 136935410 136935410 A G MAP3K5 Missense_Mutation p.L722P 0.22 deleterious(0) probably_damaging(1) TCGA-77-8128-01 6 148854015 148854015 G A SASH1 Silent p.P549P 0.51 TCGA-77-8128-01 6 168430206 168430206 G T KIF25 5'UTR 0.11 TCGA-77-8128-01 6 168430233 168430233 G T KIF25 5'UTR 0.14 TCGA-77-8128-01 6 168430282 168430282 G T KIF25 Missense_Mutation p.G6V 0.15 tolerated_low_confidence(0.1) benign(0.019) TCGA-77-8128-01 6 168430309 168430309 G T KIF25 Missense_Mutation p.R15M 0.10 deleterious(0) benign(0.01) TCGA-77-8128-01 6 27879490 27879490 C G OR2B2 Missense_Mutation p.S203T 0.55 tolerated(0.06) possibly_damaging(0.842) TCGA-77-8128-01 6 28402510 28402510 C A ZSCAN23 Missense_Mutation p.G301V 0.40 tolerated(0.75) probably_damaging(0.978) TCGA-77-8128-01 6 28402511 28402511 C A ZSCAN23 Missense_Mutation p.G301W 0.40 deleterious(0.01) probably_damaging(1) TCGA-77-8128-01 6 33255781 33255781 T C WDR46 Missense_Mutation p.Q195R 0.69 tolerated(0.13) benign(0.375) TCGA-77-8128-01 6 348878 348878 C A DUSP22 Intron 0.41 TCGA-77-8128-01 6 38702274 38702274 C T DNAH8 5'UTR 0.06 TCGA-77-8128-01 6 42227108 42227108 C A TRERF1 Silent p.T746T 0.38 TCGA-77-8128-01 6 49604368 49604368 C A RHAG Splice_Site p.X53_splice 0.21 TCGA-77-8128-01 6 49976967 49976967 G A DEFB110 Missense_Mutation p.P25S 0.28 deleterious_low_confidence(0.01) benign(0.127) TCGA-77-8128-01 6 69348672 69348672 G T BAI3 Missense_Mutation p.K35N 0.19 deleterious(0.02) probably_damaging(0.966) TCGA-77-8128-01 6 75860891 75860891 G T COL12A1 Silent p.L1371L 0.27 TCGA-77-8128-01 6 87966807 87966807 G C ZNF292 Missense_Mutation p.V1154L 0.17 deleterious(0.02) benign(0.05) TCGA-77-8128-01 7 100549762 100549762 A G MUC3A Missense_Mutation p.T115A 0.13 deleterious(0.01) unknown(0) TCGA-77-8128-01 7 100695095 100695095 A C MUC17 Missense_Mutation p.K4319Q 0.23 unknown(0) TCGA-77-8128-01 7 103474068 103474068 G T RELN Missense_Mutation p.A130D 0.32 tolerated(0.17) possibly_damaging(0.693) TCGA-77-8128-01 7 103629610 103629610 G T RELN Missense_Mutation p.P65H 0.15 deleterious(0) possibly_damaging(0.864) TCGA-77-8128-01 7 112102066 112102066 C A IFRD1 Nonsense_Mutation p.S210* 0.26 TCGA-77-8128-01 7 124532393 124532393 A G POT1 Silent p.L17L 0.14 TCGA-77-8128-01 7 132192928 132192928 G T PLXNA4 Silent p.S175S 0.11 TCGA-77-8128-01 7 142448719 142448720 AT - TRBV29-1 Frame_Shift_Del p.Y106Sfs*5 0.28 TCGA-77-8128-01 7 149148117 149148117 C A ZNF777 Missense_Mutation p.G354C 0.37 deleterious(0.04) probably_damaging(0.947) TCGA-77-8128-01 7 151962208 151962208 G T KMT2C Missense_Mutation p.H367N 0.03 probably_damaging(0.993) TCGA-77-8128-01 7 15405772 15405772 C A AGMO Missense_Mutation p.D384Y 0.24 deleterious(0) probably_damaging(0.977) TCGA-77-8128-01 7 157926745 157926745 G C PTPRN2 Missense_Mutation p.R394G 0.11 deleterious(0.04) benign(0.177) TCGA-77-8128-01 7 158698749 158698749 G C WDR60 Missense_Mutation p.R476P 0.40 deleterious(0) possibly_damaging(0.859) TCGA-77-8128-01 7 31126117 31126117 G A ADCYAP1R1 Silent p.R263R 0.29 TCGA-77-8128-01 7 44079122 44079124 CTT - LINC00957 RNA 0.09 TCGA-77-8128-01 7 47840440 47840440 A T PKD1L1 Missense_Mutation p.L2667Q 0.49 deleterious(0) probably_damaging(0.988) TCGA-77-8128-01 7 48550772 48550772 G T ABCA13 Silent p.T4539T 0.39 TCGA-77-8128-01 7 57510033 57510033 G T ZNF716 Missense_Mutation p.M13I 0.29 deleterious(0.01) benign(0.275) TCGA-77-8128-01 7 57522166 57522166 G T ZNF716 Nonsense_Mutation p.G14* 0.50 TCGA-77-8128-01 7 7472137 7472137 C T COL28A1 Missense_Mutation p.M655I 0.42 tolerated(0.45) benign(0.003) TCGA-77-8128-01 7 77408215 77408215 T C RSBN1L Silent p.I757I 0.45 TCGA-77-8128-01 7 82579785 82579785 C A PCLO Missense_Mutation p.W3373C 0.47 unknown(0) TCGA-77-8128-01 7 82579786 82579786 C A PCLO Missense_Mutation p.W3373L 0.47 unknown(0) TCGA-77-8128-01 7 89861674 89861674 G T STEAP2 Silent p.L403L 0.39 TCGA-77-8128-01 7 92735187 92735187 C A SAMD9 Missense_Mutation p.R75L 0.39 tolerated(0.36) benign(0) TCGA-77-8128-01 7 92764530 92764530 A C SAMD9L Missense_Mutation p.V252G 0.35 deleterious(0) probably_damaging(0.945) TCGA-77-8128-01 7 92848715 92848715 G A HEPACAM2 Silent p.G43G 0.33 TCGA-77-8128-01 7 99453308 99453308 G A CYP3A43 Silent p.R255R 0.20 TCGA-77-8128-01 8 100990232 100990232 T A RGS22 Missense_Mutation p.E1144D 0.43 tolerated(0.34) benign(0.172) TCGA-77-8128-01 8 103573169 103573170 - C ODF1 3'UTR 0.35 TCGA-77-8128-01 8 104447984 104447984 A G DCAF13 Missense_Mutation p.I458V 0.30 tolerated(0.47) benign(0.007) TCGA-77-8128-01 8 106813743 106813743 G A ZFPM2 Missense_Mutation p.R478K 0.12 tolerated(0.13) probably_damaging(0.986) TCGA-77-8128-01 8 110631091 110631091 T A SYBU Missense_Mutation p.K136M 0.30 deleterious(0) probably_damaging(1) TCGA-77-8128-01 8 113299388 113299388 C A CSMD3 Missense_Mutation p.R3079L 0.47 deleterious(0.04) benign(0.072) TCGA-77-8128-01 8 124693303 124693303 C T ANXA13 3'UTR 0.37 TCGA-77-8128-01 8 134145733 134145733 G C TG Missense_Mutation p.E2673Q 0.32 tolerated(0.15) benign(0.423) TCGA-77-8128-01 8 136659329 136659329 T C KHDRBS3 3'UTR 0.42 TCGA-77-8128-01 8 139144941 139144941 G T FAM135B Missense_Mutation p.N1372K 0.31 deleterious(0) benign(0.13) TCGA-77-8128-01 8 139601602 139601602 T C COL22A1 Missense_Mutation p.H1592R 0.33 unknown(0) TCGA-77-8128-01 8 145000997 145000997 G A PLEC Silent p.Y1470Y 0.37 TCGA-77-8128-01 8 37793232 37793232 G T GOT1L1 Missense_Mutation p.L307M 0.23 tolerated(0.17) possibly_damaging(0.54) TCGA-77-8128-01 8 54142029 54142029 C A OPRK1 Missense_Mutation p.S324I 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-77-8128-01 8 56695356 56695356 A G TGS1 Missense_Mutation p.S51G 0.12 tolerated(0.16) benign(0.08) TCGA-77-8128-01 8 57079375 57079375 A T PLAG1 Silent p.T310T 0.59 TCGA-77-8128-01 8 59059368 59059368 C T FAM110B Silent p.F193F 0.31 TCGA-77-8128-01 8 67086709 67086709 G - TRIM55 Frame_Shift_Del p.G510Dfs*34 0.14 TCGA-77-8128-01 8 69046452 69046452 G T PREX2 Missense_Mutation p.D1309Y 0.16 deleterious(0) benign(0.235) TCGA-77-8128-01 8 87680385 87680385 C G CNGB3 Missense_Mutation p.A169P 0.33 tolerated(0.97) benign(0.008) TCGA-77-8128-01 8 87680386 87680386 C G CNGB3 Silent p.T168T 0.34 TCGA-77-8128-01 8 95411760 95411760 A C RAD54B Missense_Mutation p.I420M 0.17 deleterious(0.02) probably_damaging(0.938) TCGA-77-8128-01 9 115759497 115759497 G T ZNF883 RNA 0.82 TCGA-77-8128-01 9 139390521 139390521 G A NOTCH1 3'UTR 0.12 TCGA-77-8128-01 9 139402723 139402723 C A NOTCH1 Missense_Mutation p.V1096L 0.36 deleterious(0.01) benign(0.426) TCGA-77-8128-01 9 35809870 35809870 C T SPAG8 Intron 0.92 TCGA-77-8128-01 9 6984292 6984292 A G KDM4C Silent p.E414E 0.78 TCGA-77-8128-01 9 88842915 88842915 A G C9orf153 Missense_Mutation p.F33L 0.67 deleterious(0.05) possibly_damaging(0.682) TCGA-77-8128-01 X 110489754 110489754 C T CAPN6 3'UTR 0.83 TCGA-77-8128-01 X 110644393 110644393 A G DCX Missense_Mutation p.V258A 0.89 tolerated(0.07) benign(0.283) TCGA-77-8128-01 X 125299752 125299752 C T DCAF12L2 Silent p.V52V 0.74 TCGA-77-8128-01 X 131231309 131231309 C A FRMD7 Missense_Mutation p.R90L 0.77 tolerated(0.23) benign(0.016) TCGA-77-8128-01 X 148035158 148035158 G T AFF2 Silent p.G482G 0.77 TCGA-77-8128-01 X 18616666 18616666 G A CDKL5 Missense_Mutation p.D304N 0.46 deleterious_low_confidence(0.02) possibly_damaging(0.539) TCGA-77-8128-01 X 20081543 20081543 G A MAP7D2 Missense_Mutation p.R121W 0.80 deleterious(0) probably_damaging(0.999) TCGA-77-8128-01 X 26212887 26212887 G T MAGEB6 Missense_Mutation p.W308C 0.79 deleterious(0) probably_damaging(0.998) TCGA-77-8128-01 X 37029363 37029363 C T FAM47C Silent p.P960P 0.76 TCGA-77-8128-01 X 41333981 41333981 C A NYX Silent p.V425V 0.60 TCGA-77-8128-01 X 47774581 47774581 G T ZNF81 Missense_Mutation p.S179I 0.81 tolerated(0.08) benign(0.244) TCGA-77-8128-01 X 50121144 50121145 - A DGKK RNA 0.45 TCGA-77-8128-01 X 50129490 50129490 G C DGKK RNA 0.76 TCGA-77-8128-01 X 51150803 51150803 G A CXorf67 Missense_Mutation p.R312H 0.22 tolerated(0.56) possibly_damaging(0.579) TCGA-77-8128-01 X 6069415 6069415 A G NLGN4X Silent p.A31A 0.80 TCGA-77-8130-01 10 104165001 104165001 C - PSD Frame_Shift_Del p.G779Afs*15 0.18 TCGA-77-8130-01 10 115343010 115343010 A G HABP2 Missense_Mutation p.D377G 0.32 tolerated(0.46) benign(0.009) TCGA-77-8130-01 10 116335253 116335253 C A ABLIM1 Missense_Mutation p.G162V 0.20 deleterious(0) possibly_damaging(0.901) TCGA-77-8130-01 10 117884971 117884971 C T GFRA1 Silent p.P177P 0.20 TCGA-77-8130-01 10 135013926 135013926 G T KNDC1 Missense_Mutation p.R984L 0.30 tolerated(0.39) benign(0.035) TCGA-77-8130-01 11 1104058 1104058 C T MUC2 Missense_Mutation p.A2750V 0.26 unknown(0) TCGA-77-8130-01 11 115099934 115099934 A C CADM1 Missense_Mutation p.L207R 0.52 deleterious(0) probably_damaging(0.997) TCGA-77-8130-01 11 12234877 12234877 C G MICAL2 Missense_Mutation p.A256G 0.12 deleterious(0) probably_damaging(0.999) TCGA-77-8130-01 11 123755293 123755293 A G TMEM225 Missense_Mutation p.F78L 0.42 tolerated(0.16) possibly_damaging(0.787) TCGA-77-8130-01 11 123847570 123847570 G A OR10S1 Missense_Mutation p.R277C 0.24 tolerated(0.05) possibly_damaging(0.816) TCGA-77-8130-01 11 55406045 55406045 A G OR4P4 Missense_Mutation p.Y71C 0.30 deleterious(0.04) benign(0.12) TCGA-77-8130-01 11 59271540 59271540 G A OR4D11 Silent p.L164L 0.23 TCGA-77-8130-01 11 62373637 62373637 G A EML3 Silent p.F518F 0.27 TCGA-77-8130-01 11 6239989 6239989 G C FAM160A2 Missense_Mutation p.L426V 0.24 deleterious(0) probably_damaging(0.996) TCGA-77-8130-01 11 8111695 8111695 G A TUB Missense_Mutation p.R112Q 0.12 deleterious(0.03) probably_damaging(0.994) TCGA-77-8130-01 12 100994235 100994235 G A GAS2L3 Missense_Mutation p.V32I 0.17 deleterious(0.01) possibly_damaging(0.866) TCGA-77-8130-01 12 11546152 11546152 G C PRB2 Missense_Mutation p.P287R 0.24 tolerated(0.89) unknown(0) TCGA-77-8130-01 12 119568519 119568519 C A SRRM4 Silent p.S217S 0.10 TCGA-77-8130-01 12 121947434 121947434 G A KDM2B Missense_Mutation p.P528L 0.31 deleterious(0.01) probably_damaging(0.97) TCGA-77-8130-01 12 129467596 129467596 A G GLT1D1 Silent p.Q254Q 0.22 TCGA-77-8130-01 12 22778180 22778180 A T ETNK1 Missense_Mutation p.Q28L 0.18 deleterious_low_confidence(0) benign(0.007) TCGA-77-8130-01 12 57112037 57112037 C T NACA Intron 0.32 TCGA-77-8130-01 12 57431736 57431736 G T MYO1A Silent p.A626A 0.26 TCGA-77-8130-01 12 57601916 57601916 G A LRP1 Silent p.A3985A 0.05 TCGA-77-8130-01 12 78401200 78401200 G A NAV3 Missense_Mutation p.A628T 0.11 deleterious(0) probably_damaging(0.999) TCGA-77-8130-01 12 7985387 7985387 G A SLC2A14 Silent p.A37A 0.16 TCGA-77-8130-01 12 91347926 91347926 G A CCER1 Silent p.Y198Y 0.13 TCGA-77-8130-01 13 103295642 103295642 G A TPP2 Silent p.K697K 0.08 TCGA-77-8130-01 13 37015316 37015316 T C CCNA1 Missense_Mutation p.I387T 0.18 tolerated(0.34) benign(0.031) TCGA-77-8130-01 13 58208165 58208165 C A PCDH17 Silent p.L495L 0.38 TCGA-77-8130-01 14 102027960 102027960 G A DIO3 Missense_Mutation p.A43T 0.22 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-77-8130-01 14 104056559 104056559 G T APOPT1 Missense_Mutation p.G186V 0.20 deleterious(0.04) possibly_damaging(0.883) TCGA-77-8130-01 14 20665785 20665785 G A OR11G2 Missense_Mutation p.M97I 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-77-8130-01 14 22471693 22471693 C G TRAV18 Missense_Mutation p.T39R 0.22 deleterious(0.02) possibly_damaging(0.759) TCGA-77-8130-01 14 23844920 23844920 C G IL25 Missense_Mutation p.S122C 0.22 deleterious(0.01) probably_damaging(0.983) TCGA-77-8130-01 14 42356959 42356959 C A LRFN5 Silent p.L377L 0.22 TCGA-77-8130-01 14 64421586 64421586 G T SYNE2 Missense_Mutation p.R247I 0.16 benign(0.406) TCGA-77-8130-01 14 70635049 70635049 C A SLC8A3 Nonsense_Mutation p.E31* 0.18 TCGA-77-8130-01 14 90485700 90485700 A G TDP1 Missense_Mutation p.N528D 0.27 tolerated(0.09) benign(0.127) TCGA-77-8130-01 14 91700801 91700801 G A GPR68 Silent p.I198I 0.23 TCGA-77-8130-01 15 22382885 22382885 C G OR4N4 Missense_Mutation p.P138R 0.16 tolerated(1) benign(0.031) TCGA-77-8130-01 15 24923375 24923375 C A NPAP1 Silent p.P787P 0.12 TCGA-77-8130-01 15 24924426 24924426 A C NPAP1 Missense_Mutation p.T1138P 0.17 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-77-8130-01 15 33928630 33928630 G A RYR3 Silent p.G1145G 0.16 TCGA-77-8130-01 15 41812672 41812672 G C RPAP1 Missense_Mutation p.R1238G 0.30 deleterious(0) probably_damaging(0.985) TCGA-77-8130-01 15 43531238 43531238 G A TGM5 Silent p.G374G 0.30 TCGA-77-8130-01 15 49776570 49776570 G T FGF7 Missense_Mutation p.A152S 0.10 tolerated(0.23) possibly_damaging(0.656) TCGA-77-8130-01 15 49776571 49776571 C T FGF7 Missense_Mutation p.A152V 0.10 deleterious(0.03) possibly_damaging(0.638) TCGA-77-8130-01 15 63904574 63904574 T G HERC1 Missense_Mutation p.H4759P 0.15 benign(0.121) TCGA-77-8130-01 15 71174965 71174965 A G THAP10 Missense_Mutation p.F201S 0.14 tolerated(0.2) benign(0.003) TCGA-77-8130-01 15 90022587 90022587 G C RHCG Missense_Mutation p.S268C 0.08 deleterious(0.01) benign(0.33) TCGA-77-8130-01 16 11370141 11370141 G A PRM2 Silent p.H29H 0.26 TCGA-77-8130-01 16 21033358 21033358 A G DNAH3 Missense_Mutation p.F1904S 0.17 tolerated(0.41) benign(0.004) TCGA-77-8130-01 16 22277752 22277752 C A EEF2K Silent p.L494L 0.12 TCGA-77-8130-01 16 28931174 28931174 A G RABEP2 Missense_Mutation p.L122P 0.10 deleterious(0) probably_damaging(0.99) TCGA-77-8130-01 16 29998215 29998215 G A TAOK2 Silent p.G874G 0.14 TCGA-77-8130-01 16 31373182 31373182 C A ITGAX Silent p.S346S 0.29 TCGA-77-8130-01 16 47163139 47163139 C T NETO2 Silent p.L76L 0.21 TCGA-77-8130-01 16 47723012 47723012 G T PHKB Missense_Mutation p.L897F 0.17 tolerated(0.06) benign(0.025) TCGA-77-8130-01 16 48329998 48329998 C T LONP2 Missense_Mutation p.L486F 0.20 deleterious(0.01) probably_damaging(0.958) TCGA-77-8130-01 16 56686886 56686888 GCT - MT1B In_Frame_Del p.C34del 0.31 TCGA-77-8130-01 16 57206698 57206698 C T FAM192A Silent p.Q72Q 0.15 TCGA-77-8130-01 16 67223029 67223029 A T EXOC3L1 Missense_Mutation p.L34H 0.33 deleterious(0) probably_damaging(1) TCGA-77-8130-01 16 75564109 75564109 G A CHST5 Silent p.G58G 0.47 TCGA-77-8130-01 17 28409939 28409939 C G EFCAB5 Missense_Mutation p.H1153D 0.12 deleterious(0) probably_damaging(0.999) TCGA-77-8130-01 17 45755675 45755675 C T KPNB1 Missense_Mutation p.S750L 0.21 tolerated(0.44) benign(0.015) TCGA-77-8130-01 17 48434090 48434090 C A XYLT2 Missense_Mutation p.H567Q 0.17 tolerated(0.13) benign(0.006) TCGA-77-8130-01 17 57759132 57759132 T C CLTC Missense_Mutation p.I1125T 0.08 deleterious(0) benign(0.403) TCGA-77-8130-01 17 72759512 72759512 G A SLC9A3R1 Missense_Mutation p.G204R 0.14 deleterious(0.02) probably_damaging(0.996) TCGA-77-8130-01 17 7577025 7577025 T A TP53 Nonsense_Mutation p.K305* 0.39 TCGA-77-8130-01 17 7802704 7802704 C G CHD3 Missense_Mutation p.T855S 0.28 possibly_damaging(0.621) TCGA-77-8130-01 18 12724675 12724675 A C PSMG2 Intron 0.55 TCGA-77-8130-01 18 29625622 29625622 G T RNF125 Missense_Mutation p.C144F 0.33 deleterious(0.04) benign(0.011) TCGA-77-8130-01 18 5406802 5406802 T C EPB41L3 Missense_Mutation p.M775V 0.25 deleterious(0) probably_damaging(0.983) TCGA-77-8130-01 19 12577290 12577290 C T ZNF709 Silent p.Q58Q 0.08 TCGA-77-8130-01 19 1271358 1271358 C G CIRBP Missense_Mutation p.Q81E 0.12 deleterious(0.01) benign(0.014) TCGA-77-8130-01 19 15587127 15587127 G T PGLYRP2 Silent p.T118T 0.08 TCGA-77-8130-01 19 17660319 17660319 G A FAM129C Nonsense_Mutation p.W609* 0.17 TCGA-77-8130-01 19 23415020 23415020 T A ZNF724P Missense_Mutation p.N27Y 0.09 deleterious(0.01) probably_damaging(0.973) TCGA-77-8130-01 19 2413899 2413899 G A TMPRSS9 Missense_Mutation p.A452T 0.08 tolerated(1) benign(0.002) TCGA-77-8130-01 19 3053784 3053784 C A AES 3'UTR 0.43 TCGA-77-8130-01 19 36049555 36049555 C T ATP4A Missense_Mutation p.R430Q 0.24 tolerated(0.63) benign(0.132) TCGA-77-8130-01 19 39371756 39371756 A G SIRT2 Missense_Mutation p.F244S 0.15 deleterious(0.03) benign(0.084) TCGA-77-8130-01 19 4164628 4164628 C A CREB3L3 Silent p.P235P 0.14 TCGA-77-8130-01 19 43762457 43762457 A G PSG9 Silent p.F380F 0.25 TCGA-77-8130-01 19 45895472 45895472 T C PPP1R13L Missense_Mutation p.Q494R 0.26 deleterious(0.03) benign(0.069) TCGA-77-8130-01 19 46338358 46338358 C T SYMPK Missense_Mutation p.M457I 0.08 tolerated(0.11) benign(0.007) TCGA-77-8130-01 19 49513769 49513769 G T RUVBL2 Missense_Mutation p.G230W 0.16 deleterious(0) probably_damaging(1) TCGA-77-8130-01 19 49539433 49539433 G T CGB1 Missense_Mutation p.T46N 0.06 deleterious(0.03) probably_damaging(0.982) TCGA-77-8130-01 19 51656438 51656438 C A SIGLEC7 Missense_Mutation p.P447H 0.31 deleterious(0.03) benign(0.118) TCGA-77-8130-01 19 53014461 53014461 G A ZNF578 Missense_Mutation p.R276H 0.20 tolerated(0.54) benign(0.006) TCGA-77-8130-01 19 7119480 7119480 G C INSR Silent p.P1258P 0.38 TCGA-77-8130-01 19 8530214 8530214 G T HNRNPM Missense_Mutation p.D149Y 0.40 deleterious(0.01) possibly_damaging(0.823) TCGA-77-8130-01 19 9763901 9763901 T A ZNF562 Silent p.V335V 0.06 TCGA-77-8130-01 1 147095796 147095796 G C BCL9 Missense_Mutation p.G1106A 0.16 tolerated(0.61) probably_damaging(0.987) TCGA-77-8130-01 1 153785732 153785732 C T GATAD2B Silent p.Q471Q 0.09 TCGA-77-8130-01 1 153903039 153903039 G A DENND4B Silent p.L1441L 0.10 TCGA-77-8130-01 1 154920127 154920127 C T PBXIP1 Silent p.G243G 0.12 TCGA-77-8130-01 1 157665151 157665151 T C FCRL3 Missense_Mutation p.Q460R 0.13 deleterious(0.03) benign(0.411) TCGA-77-8130-01 1 158687339 158687339 A G OR6K3 Silent p.C189C 0.12 TCGA-77-8130-01 1 165380300 165380300 C G RXRG Missense_Mutation p.E223D 0.09 tolerated(0.19) possibly_damaging(0.509) TCGA-77-8130-01 1 16558589 16558589 A C RSG1 Missense_Mutation p.V244G 0.12 deleterious(0) benign(0.282) TCGA-77-8130-01 1 181686280 181686280 C G CACNA1E Missense_Mutation p.S456C 0.35 deleterious(0) possibly_damaging(0.7) TCGA-77-8130-01 1 203194950 203194950 C A CHIT1 Missense_Mutation p.R35I 0.28 deleterious(0) probably_damaging(0.997) TCGA-77-8130-01 1 208202232 208202232 G A PLXNA2 Missense_Mutation p.P1794L 0.07 deleterious(0) probably_damaging(0.995) TCGA-77-8130-01 1 21103144 21103145 - C HP1BP3 Frame_Shift_Ins p.E99Gfs*3 0.23 TCGA-77-8130-01 1 216737736 216737736 C T ESRRG Nonsense_Mutation p.W241* 0.18 TCGA-77-8130-01 1 237872169 237872169 C T RYR2 Missense_Mutation p.P3305S 0.31 probably_damaging(0.992) TCGA-77-8130-01 1 240371287 240371287 C G FMN2 Missense_Mutation p.P1059A 0.05 unknown(0) TCGA-77-8130-01 1 247587513 247587513 G T NLRP3 Silent p.L256L 0.09 TCGA-77-8130-01 1 248129590 248129590 G A OR2AK2 Silent p.L319L 0.38 TCGA-77-8130-01 1 248366639 248366639 G C OR2M3 Missense_Mutation p.K90N 0.12 tolerated(0.11) benign(0.078) TCGA-77-8130-01 1 248737415 248737415 G T OR2T34 Missense_Mutation p.P215H 0.07 deleterious(0) probably_damaging(1) TCGA-77-8130-01 1 27875724 27875724 A T AHDC1 Missense_Mutation p.L968Q 0.22 tolerated_low_confidence(0.29) benign(0) TCGA-77-8130-01 1 36319184 36319184 A G AGO4 Missense_Mutation p.Q855R 0.18 tolerated(0.41) benign(0) TCGA-77-8130-01 1 54423868 54423868 G T LRRC42 Nonsense_Mutation p.E174* 0.33 TCGA-77-8130-01 1 70505097 70505097 C T LRRC7 Missense_Mutation p.T1159I 0.12 deleterious(0) benign(0.016) TCGA-77-8130-01 1 75107030 75107030 G C C1orf173 Silent p.S143S 0.14 TCGA-77-8130-01 20 42694541 42694541 C G TOX2 Missense_Mutation p.P384A 0.22 tolerated(0.06) benign(0.165) TCGA-77-8130-01 20 62045471 62045471 G A KCNQ2 Missense_Mutation p.P534L 0.13 deleterious(0) probably_damaging(0.991) TCGA-77-8130-01 20 62575983 62575983 G C UCKL1 Missense_Mutation p.I253M 0.24 tolerated(0.05) probably_damaging(0.98) TCGA-77-8130-01 21 22658641 22658641 A T NCAM2 Missense_Mutation p.E130D 0.33 tolerated(1) benign(0.003) TCGA-77-8130-01 21 47986477 47986477 G A DIP2A Silent p.R1448R 0.05 TCGA-77-8130-01 2 121742188 121742188 C T GLI2 Silent p.L609L 0.36 TCGA-77-8130-01 2 122206616 122206616 G A CLASP1 Missense_Mutation p.A535V 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-77-8130-01 2 125530483 125530483 G T CNTNAP5 Nonsense_Mutation p.E880* 0.44 TCGA-77-8130-01 2 128354052 128354052 C A MYO7B Missense_Mutation p.L754M 0.17 tolerated(0.23) benign(0.12) TCGA-77-8130-01 2 130899706 130899706 C A CCDC74B Missense_Mutation p.G182C 0.13 deleterious(0) probably_damaging(0.989) TCGA-77-8130-01 2 140992385 140992385 G A LRP1B Silent p.N4543N 0.15 TCGA-77-8130-01 2 167279780 167279780 C G SCN7A Missense_Mutation p.V1006L 0.39 tolerated(1) benign(0.008) TCGA-77-8130-01 2 175338065 175338065 G T GPR155 Missense_Mutation p.P163Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-77-8130-01 2 179401895 179401895 G T TTN Missense_Mutation p.P33314Q 0.49 TCGA-77-8130-01 2 179616613 179616613 G T TTN Intron 0.43 TCGA-77-8130-01 2 187495574 187495574 G T ITGAV Missense_Mutation p.D192Y 0.37 deleterious(0) probably_damaging(0.982) TCGA-77-8130-01 2 203147117 203147117 A T NOP58 Missense_Mutation p.K73N 0.21 deleterious(0) possibly_damaging(0.901) TCGA-77-8130-01 2 204055099 204055099 G A NBEAL1 Missense_Mutation p.C2274Y 0.09 deleterious(0) probably_damaging(1) TCGA-77-8130-01 2 206869260 206869260 G A INO80D Silent p.L972L 0.36 TCGA-77-8130-01 2 219029079 219029079 C T CXCR1 Missense_Mutation p.A286T 0.07 deleterious(0.03) possibly_damaging(0.901) TCGA-77-8130-01 2 227914846 227914846 C A COL4A4 Missense_Mutation p.G1051V 0.14 unknown(0) TCGA-77-8130-01 2 227914847 227914847 C A COL4A4 Missense_Mutation p.G1051C 0.15 unknown(0) TCGA-77-8130-01 2 231152657 231152657 G A SP140 Missense_Mutation p.A566T 0.18 tolerated(0.37) benign(0.003) TCGA-77-8130-01 2 242192807 242192807 C G HDLBP Splice_Site p.X431_splice 0.15 TCGA-77-8130-01 2 27000932 27000932 C T SLC35F6 Silent p.L223L 0.48 TCGA-77-8130-01 2 27150238 27150238 G T DPYSL5 Missense_Mutation p.A180S 0.26 tolerated(0.4) benign(0.23) TCGA-77-8130-01 2 33614347 33614347 A T LTBP1 Missense_Mutation p.E1603V 0.37 tolerated(0.09) possibly_damaging(0.638) TCGA-77-8130-01 2 45778374 45778374 C T SRBD1 Missense_Mutation p.G522E 0.14 tolerated(0.07) probably_damaging(0.957) TCGA-77-8130-01 2 47748484 47748484 C T KCNK12 Silent p.L285L 0.28 TCGA-77-8130-01 2 50847286 50847286 C A NRXN1 Silent p.T438T 0.06 TCGA-77-8130-01 2 61473608 61473608 A G USP34 Silent p.F2133F 0.20 TCGA-77-8130-01 2 77748816 77748816 G T LRRTM4 5'UTR 0.20 TCGA-77-8130-01 2 79385455 79385455 T A REG3A Silent p.T110T 0.18 TCGA-77-8130-01 2 79385824 79385824 G A REG3A Missense_Mutation p.H50Y 0.23 tolerated(1) benign(0.003) TCGA-77-8130-01 2 90108555 90108555 G T IGKV6D-41 Missense_Mutation p.R9L 0.26 tolerated(0.65) benign(0) TCGA-77-8130-01 3 108366900 108366900 A - DZIP3 Frame_Shift_Del p.D636Mfs*47 0.24 TCGA-77-8130-01 3 135870014 135870014 G C MSL2 Missense_Mutation p.A570G 0.27 tolerated(0.06) benign(0.188) TCGA-77-8130-01 3 156396370 156396370 A G TIPARP Missense_Mutation p.N295S 0.23 tolerated(0.13) benign(0.077) TCGA-77-8130-01 3 159706912 159706912 G T IL12A Silent p.A23A 0.25 TCGA-77-8130-01 3 182871919 182871919 G C LAMP3 Missense_Mutation p.L104V 0.40 tolerated(0.11) benign(0.437) TCGA-77-8130-01 3 51895910 51895910 G C IQCF2 Missense_Mutation p.V19L 0.26 tolerated(0.36) benign(0.023) TCGA-77-8130-01 3 52822314 52822314 A G ITIH1 Missense_Mutation p.N691S 0.19 deleterious(0.02) benign(0.41) TCGA-77-8130-01 4 13578470 13578471 - GCCTCTGATCT BOD1L1 Frame_Shift_Ins p.A3011Dfs*40 0.08 TCGA-77-8130-01 4 160259549 160259549 G A RAPGEF2 Missense_Mutation p.G580E 0.23 tolerated(0.11) benign(0.013) TCGA-77-8130-01 4 187525035 187525035 C A FAT1 Nonsense_Mutation p.E3549* 0.17 TCGA-77-8130-01 4 187531037 187531040 TTGA - FAT1 Frame_Shift_Del p.I3328Tfs*47 0.31 TCGA-77-8130-01 4 187549435 187549435 C A FAT1 Missense_Mutation p.W1561C 0.44 possibly_damaging(0.886) TCGA-77-8130-01 4 42003647 42003647 G A SLC30A9 Missense_Mutation p.V42M 0.26 tolerated_low_confidence(0.31) benign(0.002) TCGA-77-8130-01 4 44449643 44449643 C A KCTD8 Missense_Mutation p.A300S 0.33 tolerated(0.41) probably_damaging(0.988) TCGA-77-8130-01 4 55127521 55127521 C G PDGFRA Missense_Mutation p.N103K 0.10 tolerated(0.31) benign(0.076) TCGA-77-8130-01 5 140553694 140553694 G C PCDHB7 Missense_Mutation p.L426F 0.22 deleterious_low_confidence(0.02) benign(0.043) TCGA-77-8130-01 5 176314477 176314477 G T HK3 Missense_Mutation p.F525L 0.15 deleterious(0.01) benign(0.031) TCGA-77-8130-01 5 23527071 23527071 C A PRDM9 Missense_Mutation p.T625N 0.26 tolerated(0.42) benign(0.056) TCGA-77-8130-01 5 23527544 23527544 C T PRDM9 Missense_Mutation p.R783W 0.12 deleterious(0) unknown(0) TCGA-77-8130-01 5 26906224 26906224 T G CDH9 Missense_Mutation p.T219P 0.05 deleterious(0) probably_damaging(0.999) TCGA-77-8130-01 5 31495409 31495409 G A DROSHA Missense_Mutation p.P580L 0.17 deleterious(0) probably_damaging(1) TCGA-77-8130-01 5 3599575 3599575 C T IRX1 Silent p.L171L 0.07 TCGA-77-8130-01 5 41019114 41019114 C A MROH2B Silent p.L816L 0.22 TCGA-77-8130-01 5 44815238 44815238 A G MRPS30 Silent p.L418L 0.42 TCGA-77-8130-01 5 79048567 79048567 A G CMYA5 Missense_Mutation p.H3687R 0.29 probably_damaging(0.946) TCGA-77-8130-01 5 81601239 81601239 A G ATP6AP1L Missense_Mutation p.R7G 0.37 tolerated_low_confidence(0.1) benign(0.081) TCGA-77-8130-01 6 110777934 110777934 A G SLC22A16 Missense_Mutation p.Y114H 0.23 tolerated(0.11) benign(0.097) TCGA-77-8130-01 6 124125304 124125304 C G NKAIN2 5'UTR 0.29 TCGA-77-8130-01 6 132966558 132966558 A G TAAR1 Silent p.F195F 0.33 TCGA-77-8130-01 6 146755107 146755107 T C GRM1 Silent p.N920N 0.26 TCGA-77-8130-01 6 159058903 159058903 A T DYNLT1 Silent p.G31G 0.18 TCGA-77-8130-01 6 165693562 165693562 C T C6orf118 Missense_Mutation p.R465K 0.12 tolerated_low_confidence(0.99) possibly_damaging(0.567) TCGA-77-8130-01 6 24403180 24403180 G T MRS2 5'Flank 0.37 TCGA-77-8130-01 6 27834975 27834975 G T HIST1H1B Missense_Mutation p.N111K 0.14 deleterious(0) probably_damaging(0.999) TCGA-77-8130-01 6 28540394 28540394 T C SCAND3 Missense_Mutation p.Q1091R 0.20 tolerated(0.11) probably_damaging(0.916) TCGA-77-8130-01 6 29639250 29639250 C T MOG 3'UTR 0.12 TCGA-77-8130-01 6 30615027 30615027 G T C6orf136 Missense_Mutation p.G7C 0.24 deleterious_low_confidence(0) benign(0.341) TCGA-77-8130-01 6 46660784 46660784 A G TDRD6 Missense_Mutation p.N1640S 0.30 tolerated(0.38) benign(0.02) TCGA-77-8130-01 6 47846507 47846507 G A PTCHD4 Silent p.S691S 0.24 TCGA-77-8130-01 6 56471517 56471517 G C DST Intron 0.28 TCGA-77-8130-01 6 56483018 56483018 T C DST Intron 0.18 TCGA-77-8130-01 6 87725403 87725403 C A HTR1E Silent p.A117A 0.21 TCGA-77-8130-01 7 117828384 117828384 A G NAA38 Missense_Mutation p.H42R 0.18 tolerated(0.15) possibly_damaging(0.905) TCGA-77-8130-01 7 128850276 128850276 G T SMO Silent p.P513P 0.17 TCGA-77-8130-01 7 138601991 138601991 T C KIAA1549 Missense_Mutation p.H794R 0.17 tolerated(0.35) benign(0.002) TCGA-77-8130-01 7 138603216 138603216 C T KIAA1549 Missense_Mutation p.D386N 0.26 tolerated(0.58) benign(0.001) TCGA-77-8130-01 7 142423231 142423231 C T TRBV27 Missense_Mutation p.L6F 0.32 TCGA-77-8130-01 7 148288145 148288145 G A C7orf33 Missense_Mutation p.R43K 0.23 deleterious_low_confidence(0) benign(0.14) TCGA-77-8130-01 7 157414145 157414145 C T PTPRN2 Silent p.A751A 0.15 TCGA-77-8130-01 7 2583312 2583312 G A BRAT1 Missense_Mutation p.R239W 0.08 deleterious(0.01) probably_damaging(0.939) TCGA-77-8130-01 7 29438095 29438095 G T CHN2 Missense_Mutation p.A95S 0.33 tolerated(0.47) probably_damaging(0.992) TCGA-77-8130-01 7 30492614 30492614 T C NOD1 Missense_Mutation p.D140G 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-77-8130-01 7 30793458 30793458 G A INMT Missense_Mutation p.R89H 0.19 deleterious(0.01) benign(0.007) TCGA-77-8130-01 7 50121490 50121490 C A ZPBP Missense_Mutation p.A72S 0.24 deleterious(0) benign(0.028) TCGA-77-8130-01 7 51098544 51098544 C G COBL Missense_Mutation p.R490P 0.11 deleterious(0.02) benign(0.001) TCGA-77-8130-01 7 5355616 5355616 C T TNRC18 Missense_Mutation p.R2278H 0.18 possibly_damaging(0.522) TCGA-77-8130-01 7 72856800 72856800 C A BAZ1B Missense_Mutation p.C1393F 0.20 tolerated(1) benign(0.058) TCGA-77-8130-01 7 82546072 82546075 CCAT AAA PCLO Frame_Shift_Del p.M3743Ffs*24 0.30 TCGA-77-8130-01 7 86468369 86468369 T A GRM3 Nonsense_Mutation p.C513* 0.18 TCGA-77-8130-01 7 86539218 86539218 C T KIAA1324L Missense_Mutation p.V757I 0.22 tolerated(0.45) benign(0.019) TCGA-77-8130-01 7 92905637 92905637 C G CCDC132 Intron 0.21 TCGA-77-8130-01 8 105509567 105509567 T A LRP12 Missense_Mutation p.R405W 0.24 deleterious(0) probably_damaging(0.999) TCGA-77-8130-01 8 113364704 113364704 C T CSMD3 Missense_Mutation p.D2066N 0.28 tolerated(0.13) possibly_damaging(0.906) TCGA-77-8130-01 8 63985494 63985494 C G TTPA Missense_Mutation p.A120P 0.23 deleterious(0.01) possibly_damaging(0.582) TCGA-77-8130-01 8 77617163 77617163 T C ZFHX4 Silent p.C280C 0.16 TCGA-77-8130-01 8 77763595 77763595 G A ZFHX4 Missense_Mutation p.D1480N 0.17 benign(0.006) TCGA-77-8130-01 8 77766998 77766998 C A ZFHX4 Missense_Mutation p.P2614Q 0.16 probably_damaging(0.999) TCGA-77-8130-01 8 87242318 87242318 T C SLC7A13 Silent p.S63S 0.62 TCGA-77-8130-01 8 95161071 95161071 G T CDH17 Missense_Mutation p.L610I 0.28 deleterious(0.01) probably_damaging(0.936) TCGA-77-8130-01 9 100666988 100666988 C A C9orf156 3'UTR 0.31 TCGA-77-8130-01 9 113550034 113550034 G A MUSK Missense_Mutation p.A615T 0.29 deleterious(0) probably_damaging(0.988) TCGA-77-8130-01 9 120475375 120475375 A G TLR4 Silent p.V323V 0.30 TCGA-77-8130-01 9 35045669 35045669 C A C9orf131 Missense_Mutation p.P1015T 0.29 deleterious(0.03) possibly_damaging(0.592) TCGA-77-8130-01 9 74337377 74337377 G C TMEM2 Missense_Mutation p.P745A 0.37 deleterious(0.01) benign(0.047) TCGA-77-8130-01 9 95078216 95078216 C A NOL8 Missense_Mutation p.G231W 0.19 deleterious(0) possibly_damaging(0.653) TCGA-77-8130-01 X 104463828 104463828 G T TEX13A Missense_Mutation p.H350N 0.48 deleterious(0.02) benign(0.001) TCGA-77-8130-01 X 142967376 142967376 A T UBE2NL Missense_Mutation p.L58F 0.44 tolerated(1) benign(0.001) TCGA-77-8130-01 X 153048489 153048489 G C SRPK3 Missense_Mutation p.V222L 0.48 deleterious(0) possibly_damaging(0.904) TCGA-77-8130-01 X 57619747 57619747 A C ZXDB Missense_Mutation p.E422D 0.42 tolerated(0.08) benign(0.254) TCGA-77-8130-01 X 65835796 65835796 G T EDA2R Missense_Mutation p.P23T 0.13 deleterious(0.01) possibly_damaging(0.869) TCGA-77-8131-01 10 115978260 115978260 A G TDRD1 Missense_Mutation p.E804G 0.10 deleterious(0.01) possibly_damaging(0.859) TCGA-77-8131-01 10 118969178 118969178 C T KCNK18 Missense_Mutation p.P175S 0.06 tolerated(0.75) benign(0.004) TCGA-77-8131-01 10 127418872 127418872 A T EDRF1 Silent p.P344P 0.08 TCGA-77-8131-01 10 129676676 129676676 C T CLRN3 Missense_Mutation p.V140I 0.11 tolerated(0.94) benign(0.005) TCGA-77-8131-01 10 18885248 18885248 T C NSUN6 Silent p.P222P 0.16 TCGA-77-8131-01 10 43650629 43650629 G C CSGALNACT2 Missense_Mutation p.R11P 0.05 tolerated(0.22) possibly_damaging(0.901) TCGA-77-8131-01 10 88819025 88819025 G C GLUD1 Silent p.L428L 0.15 TCGA-77-8131-01 11 3727809 3727809 T A NUP98 Missense_Mutation p.S931C 0.12 deleterious(0) probably_damaging(0.999) TCGA-77-8131-01 11 6239795 6239795 G A FAM160A2 Silent p.D490D 0.13 TCGA-77-8131-01 11 67176568 67176568 C T TBC1D10C Silent p.P319P 0.15 TCGA-77-8131-01 11 93542897 93542897 G A MED17 Silent p.Q533Q 0.11 TCGA-77-8131-01 12 369082 369082 G A SLC6A13 Missense_Mutation p.A46V 0.11 tolerated(0.36) benign(0.11) TCGA-77-8131-01 12 56637030 56637030 C T ANKRD52 Missense_Mutation p.A1043T 0.10 tolerated(0.55) benign(0.004) TCGA-77-8131-01 13 41517282 41517282 T C ELF1 Splice_Site p.X205_splice 0.16 TCGA-77-8131-01 13 80911823 80911824 - T SPRY2 Frame_Shift_Ins p.S7Efs*14 0.12 TCGA-77-8131-01 14 19553730 19553730 G C POTEG Missense_Mutation p.C105S 0.02 tolerated_low_confidence(0.17) benign(0.131) TCGA-77-8131-01 14 36226080 36226080 G A RALGAPA1 Silent p.V194V 0.04 TCGA-77-8131-01 14 51378501 51378501 C T PYGL Missense_Mutation p.S639N 0.14 tolerated(0.13) benign(0.002) TCGA-77-8131-01 14 69256615 69256626 CGGTGGCAGCGG - ZFP36L1 In_Frame_Del p.A214_T217del 0.08 TCGA-77-8131-01 14 74823941 74823941 C T VRTN Missense_Mutation p.T152M 0.15 deleterious(0.04) probably_damaging(0.999) TCGA-77-8131-01 14 95053946 95053946 G C SERPINA5 Missense_Mutation p.A83P 0.16 deleterious(0) probably_damaging(0.989) TCGA-77-8131-01 15 85345111 85345111 A G ZNF592 Silent p.R1097R 0.11 TCGA-77-8131-01 16 10031956 10031956 C T GRIN2A Silent p.E289E 0.15 TCGA-77-8131-01 16 53190817 53190817 A G CHD9 Silent p.S272S 0.14 TCGA-77-8131-01 17 40936598 40936598 G A WNK4 Splice_Site p.X390_splice 0.11 TCGA-77-8131-01 17 41244466 41244466 G - BRCA1 Frame_Shift_Del p.R1028Vfs*20 0.08 TCGA-77-8131-01 17 45904429 45904429 G A MRPL10 Silent p.L132L 0.19 TCGA-77-8131-01 17 58144822 58144822 G C HEATR6 Missense_Mutation p.A404G 0.12 tolerated(0.2) benign(0.008) TCGA-77-8131-01 17 7577082 7577082 C G TP53 Missense_Mutation p.E286Q 0.16 deleterious(0) probably_damaging(0.98) TCGA-77-8131-01 18 13438253 13438253 C G LDLRAD4 Missense_Mutation p.F17L 0.06 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-77-8131-01 18 9887850 9887850 C T TXNDC2 Silent p.D458D 0.20 TCGA-77-8131-01 19 33096810 33096810 G C ANKRD27 Silent p.L808L 0.11 TCGA-77-8131-01 19 44536968 44536968 G C ZNF222 Missense_Mutation p.A421P 0.04 tolerated(0.22) possibly_damaging(0.862) TCGA-77-8131-01 19 47281988 47281988 G A SLC1A5 Silent p.Y334Y 0.08 TCGA-77-8131-01 19 49657363 49657363 C G HRC Missense_Mutation p.E378Q 0.04 tolerated(0.05) probably_damaging(0.959) TCGA-77-8131-01 19 52887553 52887553 C A ZNF880 Nonsense_Mutation p.Y240* 0.16 TCGA-77-8131-01 1 110559059 110559059 C G AHCYL1 Missense_Mutation p.C292W 0.06 deleterious(0.01) probably_damaging(0.943) TCGA-77-8131-01 1 161042481 161042481 G C PVRL4 Missense_Mutation p.I501M 0.13 deleterious(0) probably_damaging(0.999) TCGA-77-8131-01 1 16957420 16957420 G C CROCCP2 RNA 0.46 TCGA-77-8131-01 1 178427022 178427022 T G RASAL2 Silent p.S865S 0.08 TCGA-77-8131-01 1 19443743 19443743 C A UBR4 Missense_Mutation p.V3599L 0.09 possibly_damaging(0.872) TCGA-77-8131-01 1 225692705 225692705 T A ENAH Missense_Mutation p.D530V 0.13 deleterious_low_confidence(0.02) probably_damaging(0.991) TCGA-77-8131-01 1 50666631 50666631 C T ELAVL4 Silent p.S311S 0.08 TCGA-77-8131-01 20 30689231 30689231 G A HCK Missense_Mutation p.R497H 0.18 deleterious(0.02) benign(0.002) TCGA-77-8131-01 20 62195634 62195634 C G HELZ2 Missense_Mutation p.G1514A 0.12 tolerated(0.08) benign(0) TCGA-77-8131-01 20 62327190 62327190 C G RTEL1 3'UTR 0.20 TCGA-77-8131-01 21 32585756 32585756 T C TIAM1 Silent p.K725K 0.10 TCGA-77-8131-01 22 42042990 42042990 C G XRCC6 Silent p.L288L 0.17 TCGA-77-8131-01 2 113955368 113955368 G A PSD4 Silent p.Q834Q 0.09 TCGA-77-8131-01 2 15694194 15694194 A G NBAS Missense_Mutation p.V93A 0.09 tolerated(0.48) benign(0.003) TCGA-77-8131-01 2 197948098 197948098 A G ANKRD44 Silent p.D459D 0.11 TCGA-77-8131-01 2 210559864 210559864 C T MAP2 Silent p.F990F 0.12 TCGA-77-8131-01 2 210884409 210884409 T C RPE Missense_Mutation p.I194T 0.08 deleterious(0) possibly_damaging(0.884) TCGA-77-8131-01 2 220379366 220379366 C A ASIC4 Missense_Mutation p.P101T 0.14 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-77-8131-01 2 228884106 228884106 G T SPHKAP Silent p.S488S 0.09 TCGA-77-8131-01 2 27480034 27480034 G C SLC30A3 Silent p.L255L 0.08 TCGA-77-8131-01 2 27850363 27850363 G A CCDC121 Missense_Mutation p.R264W 0.11 deleterious(0) possibly_damaging(0.55) TCGA-77-8131-01 2 47389437 47389437 A T CALM2 Silent p.R91R 0.09 TCGA-77-8131-01 2 48060019 48060019 A T FBXO11 Missense_Mutation p.F348I 0.12 deleterious(0.04) probably_damaging(0.987) TCGA-77-8131-01 2 85578839 85578839 G C RETSAT Missense_Mutation p.H107D 0.07 deleterious(0) probably_damaging(0.996) TCGA-77-8131-01 3 111985155 111985155 G T SLC9C1 Missense_Mutation p.L270M 0.08 deleterious(0) probably_damaging(0.978) TCGA-77-8131-01 3 113377486 113377486 T C KIAA2018 Missense_Mutation p.K1015E 0.16 benign(0.26) TCGA-77-8131-01 3 121720674 121720674 G T ILDR1 Missense_Mutation p.D139E 0.13 deleterious(0) probably_damaging(0.978) TCGA-77-8131-01 3 126737183 126737183 A G PLXNA1 Missense_Mutation p.Y1236C 0.10 tolerated(0.14) probably_damaging(0.94) TCGA-77-8131-01 3 46484994 46484994 C A LTF Missense_Mutation p.Q531H 0.13 tolerated(0.08) benign(0.025) TCGA-77-8131-01 3 98001857 98001857 C A OR5H2 Silent p.I42I 0.09 TCGA-77-8131-01 4 114378549 114378549 C T CAMK2D Missense_Mutation p.D459N 0.11 tolerated_low_confidence(0.05) possibly_damaging(0.796) TCGA-77-8131-01 4 185701548 185701548 G T ACSL1 Missense_Mutation p.Q139K 0.10 tolerated(0.25) benign(0.009) TCGA-77-8131-01 4 47877307 47877307 C A NFXL1 Missense_Mutation p.G695C 0.18 deleterious(0.04) possibly_damaging(0.623) TCGA-77-8131-01 4 71508215 71508215 G T ENAM Missense_Mutation p.G358C 0.17 deleterious(0) probably_damaging(0.978) TCGA-77-8131-01 5 112917327 112917327 G A YTHDC2 Missense_Mutation p.A1190T 0.17 tolerated(0.45) benign(0.001) TCGA-77-8131-01 5 131296269 131296269 A C ACSL6 Missense_Mutation p.S635A 0.06 tolerated(0.47) benign(0.001) TCGA-77-8131-01 5 137222944 137222944 T A MYOT Missense_Mutation p.V456D 0.11 deleterious(0) probably_damaging(0.945) TCGA-77-8131-01 5 1420720 1420720 G C SLC6A3 Nonsense_Mutation p.Y297* 0.13 TCGA-77-8131-01 5 158596019 158596019 G A RNF145 Missense_Mutation p.T358I 0.15 deleterious(0) probably_damaging(1) TCGA-77-8131-01 5 26902646 26902646 C A CDH9 Nonsense_Mutation p.E398* 0.10 TCGA-77-8131-01 5 86564387 86564387 C G RASA1 Missense_Mutation p.A40G 0.12 tolerated_low_confidence(0.14) possibly_damaging(0.515) TCGA-77-8131-01 5 89949130 89949130 G C GPR98 Missense_Mutation p.E1247Q 0.08 benign(0.018) TCGA-77-8131-01 6 134583126 134583126 C A SGK1 Missense_Mutation p.G77V 0.23 tolerated_low_confidence(0.22) benign(0) TCGA-77-8131-01 6 138199705 138199705 C T TNFAIP3 Missense_Mutation p.P375S 0.12 tolerated(0.41) benign(0.05) TCGA-77-8131-01 6 30166695 30166695 C T TRIM26 Silent p.K62K 0.18 TCGA-77-8131-01 6 31544953 31544953 C T TNF Missense_Mutation p.A114V 0.18 tolerated(0.16) benign(0.19) TCGA-77-8131-01 6 6318881 6318881 C A F13A1 Missense_Mutation p.R6M 0.07 tolerated_low_confidence(0.11) benign(0.092) TCGA-77-8131-01 7 142750294 142750294 T C OR6V1 Missense_Mutation p.F286S 0.16 deleterious(0) probably_damaging(0.988) TCGA-77-8131-01 9 139371966 139371966 C A SEC16A Silent p.R34R 0.15 TCGA-77-8131-01 9 21304966 21304966 G A IFNA5 Missense_Mutation p.S97F 0.32 tolerated(0.08) possibly_damaging(0.799) TCGA-77-8131-01 9 32541887 32541905 GTTGTATCAGTAGCTTTTC - TOPORS Frame_Shift_Del p.G873Vfs*29 0.08 TCGA-77-8131-01 9 72895747 72895747 G C SMC5 Missense_Mutation p.E251Q 0.10 tolerated(0.17) benign(0.064) TCGA-77-8131-01 9 96019288 96019288 T C WNK2 Missense_Mutation p.V750A 0.17 unknown(0) TCGA-77-8131-01 X 109698559 109698559 G C RGAG1 3'UTR 0.24 TCGA-77-8131-01 X 53631678 53631678 G C HUWE1 Missense_Mutation p.R872G 0.10 possibly_damaging(0.753) TCGA-77-8133-01 10 101483868 101483868 A T COX15 Missense_Mutation p.W199R 0.26 deleterious(0) probably_damaging(1) TCGA-77-8133-01 10 103603259 103603259 G T KCNIP2 Missense_Mutation p.L23I 0.13 tolerated_low_confidence(0.11) benign(0.133) TCGA-77-8133-01 10 104136551 104136551 A T GBF1 Missense_Mutation p.N1427Y 0.20 deleterious(0) possibly_damaging(0.851) TCGA-77-8133-01 10 108716277 108716277 A T SORCS1 Missense_Mutation p.L207H 0.05 deleterious(0) probably_damaging(0.993) TCGA-77-8133-01 10 108923902 108923902 G A SORCS1 Missense_Mutation p.P128L 0.27 tolerated(0.1) benign(0.005) TCGA-77-8133-01 10 115364629 115364629 G A NRAP Silent p.P1322P 0.38 TCGA-77-8133-01 10 118101705 118101705 T A CCDC172 Nonsense_Mutation p.L147* 0.45 TCGA-77-8133-01 10 118897397 118897397 A T VAX1 Silent p.A57A 0.34 TCGA-77-8133-01 10 120514160 120514160 G A CACUL1 Missense_Mutation p.P39S 0.15 tolerated_low_confidence(0.6) benign(0.248) TCGA-77-8133-01 10 12129672 12129672 A T DHTKD1 Missense_Mutation p.M221L 0.09 deleterious(0.01) probably_damaging(0.967) TCGA-77-8133-01 10 134664772 134664772 G A TTC40 Missense_Mutation p.A1871V 0.17 tolerated(0.1) benign(0.427) TCGA-77-8133-01 10 26802478 26802478 T G APBB1IP Missense_Mutation p.F234L 0.35 tolerated(0.06) possibly_damaging(0.759) TCGA-77-8133-01 10 37431178 37431178 A T ANKRD30A Silent p.A395A 0.23 TCGA-77-8133-01 10 43606776 43606776 C T RET Missense_Mutation p.S462L 0.16 tolerated(0.62) benign(0.081) TCGA-77-8133-01 10 44871404 44871404 G T CXCL12 3'Flank 0.35 TCGA-77-8133-01 10 47087026 47087026 C A NPY4R Silent p.A81A 0.11 TCGA-77-8133-01 10 70191694 70191694 C T DNA2 Silent p.K722K 0.29 TCGA-77-8133-01 10 75393786 75393786 C G MYOZ1 Silent p.V180V 0.06 TCGA-77-8133-01 10 75408324 75408324 G A SYNPO2L Silent p.A362A 0.06 TCGA-77-8133-01 10 75479040 75479040 G A RP11-574K11.28 RNA 0.44 TCGA-77-8133-01 10 76868945 76868945 T G DUSP13 5'UTR 0.46 TCGA-77-8133-01 10 81051988 81051988 C T ZMIZ1 Nonsense_Mutation p.Q278* 0.05 TCGA-77-8133-01 10 85992450 85992450 C A LRIT1 Missense_Mutation p.G369W 0.62 deleterious(0.02) possibly_damaging(0.502) TCGA-77-8133-01 10 87898618 87898618 G A GRID1 Silent p.I228I 0.07 TCGA-77-8133-01 10 90486603 90486603 A G LIPK Missense_Mutation p.T53A 0.44 deleterious(0.01) probably_damaging(0.995) TCGA-77-8133-01 10 91200865 91200865 C A SLC16A12 Missense_Mutation p.G150C 0.23 deleterious(0) probably_damaging(1) TCGA-77-8133-01 10 93749295 93749295 A G BTAF1 Missense_Mutation p.T938A 0.40 tolerated(0.71) benign(0.001) TCGA-77-8133-01 10 97098972 97098972 C A SORBS1 Missense_Mutation p.R928L 0.38 deleterious(0) probably_damaging(0.982) TCGA-77-8133-01 10 98325095 98325095 C A TM9SF3 Missense_Mutation p.W129C 0.23 deleterious(0) probably_damaging(0.976) TCGA-77-8133-01 11 10483246 10483246 G A AMPD3 Silent p.Q69Q 0.20 TCGA-77-8133-01 11 114453462 114453462 G T NXPE4 Missense_Mutation p.H126Q 0.41 tolerated(0.05) benign(0.175) TCGA-77-8133-01 11 1213260 1213260 G C MUC5AC RNA 0.32 TCGA-77-8133-01 11 121461865 121461865 G T SORL1 Missense_Mutation p.A1457S 0.44 tolerated(0.67) benign(0.007) TCGA-77-8133-01 11 124189962 124189962 G A OR8D2 Silent p.G44G 0.36 TCGA-77-8133-01 11 124742980 124742980 G T ROBO3 Missense_Mutation p.V511L 0.32 tolerated(1) benign(0.004) TCGA-77-8133-01 11 132177680 132177680 C A NTM Silent p.A208A 0.34 TCGA-77-8133-01 11 16834658 16834658 A C PLEKHA7 Splice_Site p.X669_splice 0.19 TCGA-77-8133-01 11 2339112 2339112 C T TSPAN32 Silent p.R307R 0.09 TCGA-77-8133-01 11 45827625 45827625 C T SLC35C1 Silent p.L91L 0.27 TCGA-77-8133-01 11 47744777 47744777 C A FNBP4 Missense_Mutation p.Q852H 0.41 deleterious_low_confidence(0.04) benign(0.007) TCGA-77-8133-01 11 4976298 4976298 C A OR51A2 Missense_Mutation p.A216S 0.31 tolerated(0.17) benign(0.021) TCGA-77-8133-01 11 5080654 5080654 C A OR52E2 Missense_Mutation p.L68F 0.49 deleterious(0) probably_damaging(0.994) TCGA-77-8133-01 11 55406601 55406601 C A OR4P4 Nonsense_Mutation p.Y256* 0.35 TCGA-77-8133-01 11 56431490 56431490 C A OR5AR1 Missense_Mutation p.A110D 0.35 deleterious(0) possibly_damaging(0.697) TCGA-77-8133-01 11 6023927 6023927 G T OR56A4 Missense_Mutation p.A151D 0.08 deleterious(0.05) possibly_damaging(0.676) TCGA-77-8133-01 11 71726489 71726489 G A NUMA1 Missense_Mutation p.A687V 0.16 benign(0.024) TCGA-77-8133-01 11 73008114 73008114 C T P2RY6 Missense_Mutation p.A184V 0.48 deleterious(0.02) benign(0.004) TCGA-77-8133-01 11 74876840 74876840 C A SLCO2B1 Missense_Mutation p.N98K 0.43 deleterious(0) possibly_damaging(0.811) TCGA-77-8133-01 11 7817604 7817604 C A OR5P2 Missense_Mutation p.A296S 0.36 deleterious(0.01) possibly_damaging(0.555) TCGA-77-8133-01 11 89106651 89106651 C A NOX4 Nonsense_Mutation p.E362* 0.38 TCGA-77-8133-01 12 103306580 103306580 G A PAH Missense_Mutation p.R53C 0.18 deleterious(0.01) benign(0.013) TCGA-77-8133-01 12 10332137 10332137 C A TMEM52B 5'UTR 0.26 TCGA-77-8133-01 12 108685499 108685499 C G CMKLR1 3'UTR 0.27 TCGA-77-8133-01 12 110780171 110780171 G T ATP2A2 Missense_Mutation p.V746F 0.40 deleterious(0) probably_damaging(0.995) TCGA-77-8133-01 12 111082794 111082794 C T TCTN1 Nonsense_Mutation p.Q452* 0.36 TCGA-77-8133-01 12 117715831 117715831 C A NOS1 Missense_Mutation p.G533C 0.32 deleterious(0) probably_damaging(1) TCGA-77-8133-01 12 12284803 12284803 T G LRP6 Missense_Mutation p.N1308H 0.43 deleterious(0) probably_damaging(0.956) TCGA-77-8133-01 12 124957551 124957551 C T NCOR2 Missense_Mutation p.D180N 0.19 unknown(0) TCGA-77-8133-01 12 129285400 129285400 T A SLC15A4 Silent p.A471A 0.23 TCGA-77-8133-01 12 130832710 130832710 T C PIWIL1 Missense_Mutation p.I239T 0.11 tolerated(0.19) benign(0.03) TCGA-77-8133-01 12 14976106 14976106 C A C12orf60 Missense_Mutation p.D79E 0.08 tolerated(0.7) benign(0.006) TCGA-77-8133-01 12 15823815 15823815 G A EPS8 Missense_Mutation p.S60L 0.13 tolerated(0.06) benign(0.345) TCGA-77-8133-01 12 26775251 26775251 C T ITPR2 Silent p.P1070P 0.06 TCGA-77-8133-01 12 52827640 52827640 C T KRT75 Missense_Mutation p.R150H 0.03 deleterious(0.01) benign(0.444) TCGA-77-8133-01 12 53722898 53722898 G T SP7 Missense_Mutation p.L110I 0.08 tolerated(0.16) probably_damaging(0.952) TCGA-77-8133-01 12 53777167 53777167 C A SP1 Missense_Mutation p.A479D 0.40 deleterious(0.01) possibly_damaging(0.908) TCGA-77-8133-01 12 55945540 55945540 G A OR6C4 Missense_Mutation p.C177Y 0.35 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-77-8133-01 12 56818844 56818844 C T TIMELESS Silent p.E557E 0.40 TCGA-77-8133-01 12 57944087 57944087 G T KIF5A Missense_Mutation p.K11N 0.36 deleterious(0.01) possibly_damaging(0.809) TCGA-77-8133-01 12 6859405 6859405 T C MLF2 Missense_Mutation p.T113A 0.23 tolerated(0.12) benign(0.003) TCGA-77-8133-01 12 72366495 72366495 G C TPH2 Missense_Mutation p.E269Q 0.23 tolerated(0.06) benign(0.195) TCGA-77-8133-01 12 7966961 7966961 A G SLC2A14 Missense_Mutation p.M505T 0.18 tolerated(0.24) benign(0.028) TCGA-77-8133-01 12 85285889 85285889 T A SLC6A15 Missense_Mutation p.N4I 0.43 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-77-8133-01 12 88380109 88380109 G A C12orf50 Missense_Mutation p.P301L 0.28 deleterious(0.05) benign(0.234) TCGA-77-8133-01 12 91347920 91347920 G T CCER1 Missense_Mutation p.D200E 0.07 deleterious(0) possibly_damaging(0.866) TCGA-77-8133-01 12 9242990 9242990 C A A2M Missense_Mutation p.R853L 0.19 deleterious(0) benign(0.242) TCGA-77-8133-01 12 92538024 92538024 T C BTG1 Silent p.G116G 0.06 TCGA-77-8133-01 12 95451638 95451638 T A NR2C1 Missense_Mutation p.R187S 0.29 deleterious(0) probably_damaging(0.991) TCGA-77-8133-01 12 96408677 96408677 C - LTA4H Frame_Shift_Del p.G387Afs*19 0.19 TCGA-77-8133-01 13 100637697 100637697 T A ZIC2 Missense_Mutation p.S454T 0.30 deleterious(0.04) benign(0.264) TCGA-77-8133-01 13 102250585 102250585 G T ITGBL1 Silent p.T317T 0.32 TCGA-77-8133-01 13 102366887 102366887 G A ITGBL1 Missense_Mutation p.G460D 0.35 deleterious(0.02) probably_damaging(0.951) TCGA-77-8133-01 13 110436554 110436554 C A IRS2 Missense_Mutation p.C616F 0.43 tolerated(0.41) benign(0) TCGA-77-8133-01 13 111077101 111077101 C - COL4A2 Frame_Shift_Del p.Q69Rfs*30 0.17 TCGA-77-8133-01 13 111368348 111368348 G T ING1 Silent p.P186P 0.23 TCGA-77-8133-01 13 30077339 30077339 G A MTUS2 Missense_Mutation p.R1379K 0.33 deleterious(0) probably_damaging(0.99) TCGA-77-8133-01 13 32783848 32783848 G A FRY Missense_Mutation p.D1468N 0.09 tolerated(0.45) benign(0.104) TCGA-77-8133-01 13 39546727 39546727 C A STOML3 Missense_Mutation p.L78F 0.37 deleterious(0) probably_damaging(0.938) TCGA-77-8133-01 13 46718627 46718627 C G LCP1 Missense_Mutation p.R401S 0.42 deleterious(0) probably_damaging(0.974) TCGA-77-8133-01 13 52508903 52508903 G T ATP7B Missense_Mutation p.Q1463K 0.05 deleterious_low_confidence(0) possibly_damaging(0.77) TCGA-77-8133-01 13 84453726 84453726 G T SLITRK1 Silent p.L639L 0.12 TCGA-77-8133-01 13 99127078 99127078 C A STK24 Silent p.S210S 0.28 TCGA-77-8133-01 14 102028531 102028531 A T DIO3 Missense_Mutation p.Q233L 0.14 tolerated(0.48) benign(0.261) TCGA-77-8133-01 14 22038311 22038311 C A OR10G3 Missense_Mutation p.A189S 0.30 deleterious(0.01) probably_damaging(1) TCGA-77-8133-01 14 23465438 23465438 G A C14orf93 Nonsense_Mutation p.R213* 0.18 TCGA-77-8133-01 14 29237599 29237599 A T FOXG1 Missense_Mutation p.I372F 0.21 deleterious_low_confidence(0.01) benign(0.191) TCGA-77-8133-01 14 42355949 42355949 G T LRFN5 Missense_Mutation p.G41W 0.29 deleterious(0) probably_damaging(1) TCGA-77-8133-01 14 47566121 47566121 G T MDGA2 Nonsense_Mutation p.Y377* 0.12 TCGA-77-8133-01 14 52734736 52734736 G T PTGDR Silent p.L68L 0.11 TCGA-77-8133-01 14 66096239 66096239 G T FUT8 Missense_Mutation p.S171I 0.25 tolerated(0.13) possibly_damaging(0.725) TCGA-77-8133-01 14 70518758 70518758 C A SLC8A3 Missense_Mutation p.L660F 0.24 deleterious(0) probably_damaging(0.973) TCGA-77-8133-01 14 90509469 90509469 C T TDP1 Silent p.N603N 0.07 TCGA-77-8133-01 14 92959888 92959888 C A SLC24A4 Nonsense_Mutation p.Y595* 0.14 TCGA-77-8133-01 15 20649488 20649488 T C HERC2P3 RNA 0.11 TCGA-77-8133-01 15 23811937 23811937 C T MKRN3 Silent p.N336N 0.30 TCGA-77-8133-01 15 24923503 24923503 C A NPAP1 Missense_Mutation p.P830H 0.45 deleterious(0) probably_damaging(0.991) TCGA-77-8133-01 15 24923805 24923805 C T NPAP1 Missense_Mutation p.P931S 0.31 tolerated(0.18) probably_damaging(0.934) TCGA-77-8133-01 15 25467527 25467527 G T SNORD115-28 RNA 0.14 TCGA-77-8133-01 15 25959189 25959189 C A ATP10A Missense_Mutation p.G659V 0.32 deleterious(0.04) benign(0.014) TCGA-77-8133-01 15 26793032 26793032 C A GABRB3 Missense_Mutation p.D444Y 0.39 deleterious(0) probably_damaging(0.997) TCGA-77-8133-01 15 33876644 33876644 A G RYR3 Missense_Mutation p.N541S 0.43 benign(0.068) TCGA-77-8133-01 15 40866463 40866463 G T RPUSD2 3'UTR 0.26 TCGA-77-8133-01 15 44903052 44903052 C A SPG11 Missense_Mutation p.G1093W 0.13 deleterious(0) probably_damaging(0.991) TCGA-77-8133-01 15 45560480 45560480 A T SLC28A2 Silent p.A424A 0.09 TCGA-77-8133-01 15 48053357 48053357 A G SEMA6D Silent p.K95K 0.14 TCGA-77-8133-01 15 49907362 49907362 C A FAM227B Missense_Mutation p.G3C 0.33 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-77-8133-01 15 51773538 51773538 T C DMXL2 Missense_Mutation p.D1922G 0.17 tolerated(0.09) benign(0.007) TCGA-77-8133-01 15 57731493 57731493 G T CGNL1 Missense_Mutation p.Q432H 0.13 tolerated(0.1) benign(0.002) TCGA-77-8133-01 15 66044865 66044865 T A DENND4A Missense_Mutation p.Q138L 0.15 deleterious(0) possibly_damaging(0.77) TCGA-77-8133-01 15 75632110 75632110 G T COMMD4 Silent p.V150V 0.18 TCGA-77-8133-01 15 89807832 89807832 G T FANCI Missense_Mutation p.G250V 0.37 tolerated(0.12) benign(0.033) TCGA-77-8133-01 15 90771953 90771953 G A SEMA4B 3'UTR 0.27 TCGA-77-8133-01 15 91524119 91524119 T G PRC1 Missense_Mutation p.K273Q 0.19 tolerated(0.1) benign(0.035) TCGA-77-8133-01 15 94983437 94983437 A G MCTP2 Silent p.L706L 0.48 TCGA-77-8133-01 16 1250554 1250554 T A CACNA1H Missense_Mutation p.W368R 0.23 deleterious(0) probably_damaging(0.999) TCGA-77-8133-01 16 2503225 2503225 C T CCNF Missense_Mutation p.A501V 0.09 tolerated(0.66) benign(0.012) TCGA-77-8133-01 16 27732966 27732966 G T KIAA0556 Missense_Mutation p.D565Y 0.25 deleterious(0) probably_damaging(0.986) TCGA-77-8133-01 16 31004442 31004442 C A STX1B Intron 0.16 TCGA-77-8133-01 16 3613544 3613544 G T NLRC3 Missense_Mutation p.A512E 0.19 tolerated(0.06) benign(0.206) TCGA-77-8133-01 16 47163201 47163201 G T NETO2 Missense_Mutation p.H56N 0.31 tolerated(0.3) benign(0.014) TCGA-77-8133-01 16 50348315 50348315 T C ADCY7 Missense_Mutation p.V990A 0.22 deleterious(0) probably_damaging(0.945) TCGA-77-8133-01 16 50707935 50707935 G T SNX20 Silent p.A111A 0.31 TCGA-77-8133-01 16 61854894 61854894 C A CDH8 Missense_Mutation p.G320V 0.10 deleterious(0.01) possibly_damaging(0.509) TCGA-77-8133-01 16 67375989 67375989 T C LRRC36 Splice_Site p.X66_splice 0.11 TCGA-77-8133-01 16 69373944 69373944 C G NIP7 Missense_Mutation p.P31R 0.33 deleterious(0.02) possibly_damaging(0.757) TCGA-77-8133-01 16 71317920 71317920 C A CMTR2 Missense_Mutation p.R635L 0.35 tolerated(0.18) benign(0.002) TCGA-77-8133-01 16 737047 737047 G C WDR24 Silent p.L343L 0.20 TCGA-77-8133-01 16 7629859 7629859 G A RBFOX1 Silent p.K137K 0.19 TCGA-77-8133-01 16 77769729 77769729 G T NUDT7 Missense_Mutation p.R65I 0.11 deleterious(0) probably_damaging(0.995) TCGA-77-8133-01 16 80638183 80638183 A C CDYL2 3'UTR 0.13 TCGA-77-8133-01 16 84028246 84028246 G T NECAB2 Missense_Mutation p.A250S 0.09 tolerated(0.19) benign(0.293) TCGA-77-8133-01 16 89293805 89293805 G T ZNF778 Missense_Mutation p.C342F 0.18 deleterious(0) probably_damaging(0.996) TCGA-77-8133-01 17 10204971 10204971 T G MYH13 Missense_Mutation p.E1906A 0.37 deleterious(0) benign(0.396) TCGA-77-8133-01 17 10419951 10419951 G A MYH1 Silent p.S3S 0.09 TCGA-77-8133-01 17 2239635 2239635 C T TSR1 Silent p.R29R 0.20 TCGA-77-8133-01 17 36935756 36935756 C A PIP4K2B Silent p.T178T 0.27 TCGA-77-8133-01 17 37792103 37792103 T A PPP1R1B Silent p.S200S 0.29 TCGA-77-8133-01 17 38574042 38574042 A C TOP2A Translation_Start_Site p.M1? 0.33 deleterious_low_confidence(0) benign(0.184) TCGA-77-8133-01 17 40010302 40010302 T C KLHL11 Missense_Mutation p.Y606C 0.31 tolerated(0.16) benign(0.023) TCGA-77-8133-01 17 40125649 40125649 C A CNP Silent p.R325R 0.32 TCGA-77-8133-01 17 56247401 56247401 C G OR4D2 Missense_Mutation p.P129A 0.24 deleterious(0) probably_damaging(0.999) TCGA-77-8133-01 17 58121212 58121212 C T HEATR6 Silent p.S1086S 0.30 TCGA-77-8133-01 17 62121495 62121495 G A ERN1 Silent p.F929F 0.05 TCGA-77-8133-01 17 63554348 63554348 C A AXIN2 Missense_Mutation p.A131S 0.21 deleterious(0) benign(0.14) TCGA-77-8133-01 17 68128668 68128668 T G KCNJ16 Missense_Mutation p.V147G 0.32 deleterious(0) possibly_damaging(0.629) TCGA-77-8133-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.32 deleterious(0) probably_damaging(1) TCGA-77-8133-01 17 76396925 76396925 A T PGS1 Missense_Mutation p.H290L 0.29 tolerated(0.16) benign(0.077) TCGA-77-8133-01 17 76851904 76851904 C T TIMP2 Missense_Mutation p.D170N 0.25 tolerated(1) benign(0.008) TCGA-77-8133-01 17 79846242 79846242 C T ALYREF Missense_Mutation p.G219S 0.11 tolerated(0.19) possibly_damaging(0.526) TCGA-77-8133-01 17 80006563 80006563 G - RFNG 3'UTR 0.17 TCGA-77-8133-01 18 14479007 14479007 A G CXADRP3 RNA 0.41 TCGA-77-8133-01 18 2539071 2539071 C A METTL4 Missense_Mutation p.W449C 0.21 deleterious(0) probably_damaging(1) TCGA-77-8133-01 18 40850534 40850534 G - SYT4 Frame_Shift_Del p.N351Mfs*20 0.17 TCGA-77-8133-01 18 50589758 50589758 A T DCC Nonsense_Mutation p.K357* 0.33 TCGA-77-8133-01 18 56246688 56246688 C T ALPK2 Silent p.T440T 0.14 TCGA-77-8133-01 18 72345526 72345526 A T ZNF407 Missense_Mutation p.T851S 0.13 tolerated(0.06) probably_damaging(0.996) TCGA-77-8133-01 19 11350314 11350315 AT - C19orf80 Frame_Shift_Del p.M1? 0.29 TCGA-77-8133-01 19 12868828 12868828 C T BEST2 Silent p.P489P 0.28 TCGA-77-8133-01 19 14569061 14569061 G A PKN1 Silent p.L437L 0.11 TCGA-77-8133-01 19 15197966 15197966 G A OR1I1 Missense_Mutation p.M30I 0.15 tolerated(0.23) benign(0) TCGA-77-8133-01 19 15728838 15728838 G T AD000091.2 5'Flank 0.35 TCGA-77-8133-01 19 1581197 1581197 G A MBD3 Missense_Mutation p.P191S 0.17 deleterious(0.05) probably_damaging(1) TCGA-77-8133-01 19 19035055 19035055 C G DDX49 Missense_Mutation p.L264V 0.43 tolerated(0.06) probably_damaging(0.999) TCGA-77-8133-01 19 21910317 21910317 C T ZNF100 Missense_Mutation p.C266Y 0.25 deleterious(0.04) probably_damaging(1) TCGA-77-8133-01 19 22157164 22157164 A T ZNF208 Silent p.T224T 0.16 TCGA-77-8133-01 19 30498375 30498375 A G URI1 Splice_Site p.X173_splice 0.29 TCGA-77-8133-01 19 33702431 33702431 G A SLC7A10 Silent p.R267R 0.10 TCGA-77-8133-01 19 40366478 40366478 C A FCGBP Missense_Mutation p.G4586W 0.36 probably_damaging(1) TCGA-77-8133-01 19 41518371 41518371 G A CYP2B6 Missense_Mutation p.R378Q 0.14 tolerated(0.06) benign(0.425) TCGA-77-8133-01 19 44501429 44501429 C T ZNF155 Missense_Mutation p.H485Y 0.11 deleterious(0) probably_damaging(0.997) TCGA-77-8133-01 19 50792782 50792782 A T MYH14 Silent p.T1614T 0.10 TCGA-77-8133-01 19 50944197 50944197 C T MYBPC2 Silent p.P211P 0.16 TCGA-77-8133-01 19 51981948 51981948 G A CEACAM18 Missense_Mutation p.A79T 0.26 deleterious(0.04) possibly_damaging(0.522) TCGA-77-8133-01 19 52220292 52220292 C T HAS1 Nonsense_Mutation p.W286* 0.16 TCGA-77-8133-01 19 52222460 52222460 T C HAS1 Missense_Mutation p.Q234R 0.17 deleterious(0.03) possibly_damaging(0.665) TCGA-77-8133-01 19 52249799 52249799 C G FPR1 Missense_Mutation p.W150S 0.10 deleterious(0) probably_damaging(1) TCGA-77-8133-01 19 54724702 54724702 T A LILRB3 Splice_Site p.X319_splice 0.13 TCGA-77-8133-01 19 54745930 54745930 G T LILRA6 Silent p.P109P 0.06 TCGA-77-8133-01 19 54783827 54783827 G A LILRB2 Silent p.Y58Y 0.35 TCGA-77-8133-01 19 55560097 55560097 C A RDH13 Silent p.A125A 0.17 TCGA-77-8133-01 19 56244335 56244335 G A NLRP9 Missense_Mutation p.R288W 0.05 deleterious(0) possibly_damaging(0.72) TCGA-77-8133-01 19 57868312 57868312 G T ZNF304 Nonsense_Mutation p.G359* 0.09 TCGA-77-8133-01 19 58189652 58189652 T A ZSCAN4 Silent p.G227G 0.33 TCGA-77-8133-01 19 5832099 5832099 G A FUT6 Silent p.S160S 0.16 TCGA-77-8133-01 19 6986314 6986314 G T EMR4P RNA 0.22 TCGA-77-8133-01 19 7168068 7168068 T A INSR Silent p.T507T 0.21 TCGA-77-8133-01 19 8203092 8203092 C T FBN3 Silent p.A378A 0.25 TCGA-77-8133-01 19 8617006 8617006 C G MYO1F Missense_Mutation p.D183H 0.14 tolerated(0.11) probably_damaging(0.928) TCGA-77-8133-01 19 9007503 9007503 G C MUC16 Silent p.P13155P 0.27 TCGA-77-8133-01 19 9083586 9083586 C A MUC16 Silent p.S2743S 0.12 TCGA-77-8133-01 19 9213822 9213822 G T OR7G2 Missense_Mutation p.S54Y 0.26 deleterious(0.01) possibly_damaging(0.759) TCGA-77-8133-01 1 102269884 102269884 T A OLFM3 Missense_Mutation p.R429S 0.26 deleterious(0.03) probably_damaging(0.994) TCGA-77-8133-01 1 102312429 102312429 G T OLFM3 Intron 0.16 TCGA-77-8133-01 1 104113272 104113272 C T AMY2B Intron 0.19 TCGA-77-8133-01 1 112309180 112309180 C G DDX20 Missense_Mutation p.Q712E 0.27 tolerated(0.14) benign(0.004) TCGA-77-8133-01 1 145293455 145293455 T C NBPF10 Missense_Mutation p.I17T 0.04 possibly_damaging(0.527) TCGA-77-8133-01 1 145473604 145473604 G T ANKRD34A Silent p.A92A 0.16 TCGA-77-8133-01 1 151315317 151315317 C A RFX5 Missense_Mutation p.G399V 0.43 tolerated_low_confidence(0.06) benign(0.194) TCGA-77-8133-01 1 152285574 152285574 G T FLG Missense_Mutation p.D596E 0.13 benign(0.444) TCGA-77-8133-01 1 155170906 155170906 G T THBS3 Missense_Mutation p.D473E 0.16 tolerated(0.41) probably_damaging(0.98) TCGA-77-8133-01 1 155450805 155450805 C A ASH1L Missense_Mutation p.G619V 0.04 tolerated_low_confidence(0.06) benign(0.002) TCGA-77-8133-01 1 158390242 158390242 C A OR10K2 Missense_Mutation p.G139W 0.10 deleterious(0.04) probably_damaging(0.997) TCGA-77-8133-01 1 158548892 158548892 G T OR10X1 Silent p.I266I 0.09 TCGA-77-8133-01 1 158812159 158812159 G T MNDA Missense_Mutation p.M72I 0.06 tolerated(1) benign(0.005) TCGA-77-8133-01 1 160064908 160064908 A T IGSF8 Missense_Mutation p.F65I 0.40 deleterious(0.01) possibly_damaging(0.541) TCGA-77-8133-01 1 16073432 16073432 C T TMEM82 Silent p.F276F 0.24 TCGA-77-8133-01 1 161599811 161599811 C A FCGR3B Missense_Mutation p.A62S 0.11 deleterious(0.02) probably_damaging(0.931) TCGA-77-8133-01 1 16355298 16355298 C T CLCNKA Silent p.S337S 0.21 TCGA-77-8133-01 1 166896301 166896301 C T ILDR2 Intron 0.43 TCGA-77-8133-01 1 169677601 169677601 G T SELL Missense_Mutation p.N156K 0.33 deleterious(0) probably_damaging(1) TCGA-77-8133-01 1 17084439 17084439 C A MST1L Intron 0.05 TCGA-77-8133-01 1 17322590 17322590 C T ATP13A2 Missense_Mutation p.A475T 0.20 deleterious(0) probably_damaging(0.999) TCGA-77-8133-01 1 176525777 176525777 G T PAPPA2 Missense_Mutation p.V107F 0.12 tolerated_low_confidence(0.41) benign(0.003) TCGA-77-8133-01 1 179815775 179815775 G A TOR1AIP2 Nonsense_Mutation p.Q282* 0.43 TCGA-77-8133-01 1 184006319 184006319 G A COLGALT2 Missense_Mutation p.A58V 0.12 tolerated(0.11) benign(0.021) TCGA-77-8133-01 1 19420517 19420517 C A UBR4 Silent p.P4621P 0.12 TCGA-77-8133-01 1 196928010 196928010 G T CFHR2 Splice_Site p.X205_splice 0.40 TCGA-77-8133-01 1 198691569 198691569 C G PTPRC Missense_Mutation p.P562A 0.08 tolerated(0.73) benign(0.001) TCGA-77-8133-01 1 198691575 198691575 G T PTPRC Nonsense_Mutation p.E564* 0.09 TCGA-77-8133-01 1 198725185 198725185 G A PTPRC Missense_Mutation p.G1266S 0.19 tolerated(0.73) benign(0.04) TCGA-77-8133-01 1 202288128 202288128 G A LGR6 Silent p.V899V 0.19 TCGA-77-8133-01 1 206653793 206653793 G A IKBKE Silent p.E448E 0.14 TCGA-77-8133-01 1 211263994 211263994 G C KCNH1 Missense_Mutation p.R117G 0.35 deleterious(0.01) probably_damaging(0.983) TCGA-77-8133-01 1 226834897 226834897 G A ITPKB Silent p.P739P 0.06 TCGA-77-8133-01 1 226834981 226834981 G A ITPKB Silent p.F711F 0.07 TCGA-77-8133-01 1 24078490 24078490 G A TCEB3 Silent p.P491P 0.12 TCGA-77-8133-01 1 241032121 241032121 G A RGS7 Missense_Mutation p.A161V 0.13 deleterious(0.03) probably_damaging(0.99) TCGA-77-8133-01 1 247582113 247582113 C A NLRP3 Missense_Mutation p.T6N 0.12 deleterious(0.01) possibly_damaging(0.726) TCGA-77-8133-01 1 247694833 247694833 C T OR2C3 3'UTR 0.06 TCGA-77-8133-01 1 247875358 247875358 G T OR6F1 Silent p.R234R 0.08 TCGA-77-8133-01 1 247875532 247875532 G T OR6F1 Missense_Mutation p.H176N 0.11 deleterious(0.03) possibly_damaging(0.708) TCGA-77-8133-01 1 248402547 248402547 C A OR2M4 Missense_Mutation p.S106Y 0.39 deleterious(0.01) probably_damaging(0.914) TCGA-77-8133-01 1 26752876 26752876 G A LIN28A Missense_Mutation p.G186E 0.17 deleterious(0.03) benign(0.323) TCGA-77-8133-01 1 33234309 33234309 C G KIAA1522 Silent p.S173S 0.27 TCGA-77-8133-01 1 37337882 37337882 G T GRIK3 Missense_Mutation p.D213E 0.31 tolerated(0.12) benign(0.179) TCGA-77-8133-01 1 45293588 45293588 G A PTCH2 Missense_Mutation p.P662L 0.13 tolerated(0.09) benign(0.002) TCGA-77-8133-01 1 45798617 45798617 C A MUTYH Silent p.L156L 0.20 TCGA-77-8133-01 1 4772752 4772752 G C AJAP1 Missense_Mutation p.E274D 0.11 tolerated(0.68) possibly_damaging(0.801) TCGA-77-8133-01 1 53927261 53927261 C - DMRTB1 Frame_Shift_Del p.L233Cfs*77 0.15 TCGA-77-8133-01 1 57480807 57480807 C A DAB1 Missense_Mutation p.R398M 0.13 tolerated(0.13) possibly_damaging(0.504) TCGA-77-8133-01 1 66081839 66081839 T C LEPR Missense_Mutation p.L715P 0.14 deleterious(0) probably_damaging(0.954) TCGA-77-8133-01 1 95492757 95492757 G A ALG14 Silent p.P116P 0.11 TCGA-77-8133-01 20 13830211 13830211 T C SEL1L2 Missense_Mutation p.I550V 0.22 tolerated_low_confidence(0.15) benign(0) TCGA-77-8133-01 20 18608842 18608842 C T DTD1 Missense_Mutation p.P148S 0.27 tolerated(0.09) benign(0.108) TCGA-77-8133-01 20 20180526 20180526 A T C20orf26 Nonsense_Mutation p.K638* 0.35 TCGA-77-8133-01 20 23967113 23967113 C T GGTLC1 Missense_Mutation p.D46N 0.36 tolerated(0.19) possibly_damaging(0.461) TCGA-77-8133-01 20 2411571 2411571 T C TGM6 Missense_Mutation p.V622A 0.38 tolerated(0.07) benign(0.1) TCGA-77-8133-01 20 29964970 29964970 C G DEFB118 3'Flank 0.29 TCGA-77-8133-01 20 35060501 35060501 C T DLGAP4 Silent p.G127G 0.27 TCGA-77-8133-01 20 36687843 36687843 A G RPRD1B Silent p.S192S 0.22 TCGA-77-8133-01 20 39977436 39977436 G T LPIN3 Missense_Mutation p.A156S 0.24 tolerated(0.75) benign(0.03) TCGA-77-8133-01 20 44678390 44678390 C A SLC12A5 Silent p.T737T 0.20 TCGA-77-8133-01 20 55803349 55803349 C A BMP7 Nonsense_Mutation p.E183* 0.04 TCGA-77-8133-01 20 56179654 56179654 C G ZBP1 Missense_Mutation p.G422A 0.28 tolerated(0.2) probably_damaging(0.91) TCGA-77-8133-01 20 57599436 57599436 G A TUBB1 Silent p.R318R 0.28 TCGA-77-8133-01 20 61456345 61456346 - G COL9A3 Frame_Shift_Ins p.E203Gfs*10 0.32 TCGA-77-8133-01 20 858845 858845 C T ANGPT4 Silent p.Q393Q 0.36 TCGA-77-8133-01 21 30250623 30250623 A T N6AMT1 Silent p.A143A 0.38 TCGA-77-8133-01 21 45511899 45511899 A T TRAPPC10 Missense_Mutation p.Q989L 0.28 tolerated(0.13) benign(0.004) TCGA-77-8133-01 22 20457142 20457142 C G RIMBP3 Missense_Mutation p.C1387S 0.13 tolerated(0.14) benign(0.047) TCGA-77-8133-01 22 30198173 30198173 C A ASCC2 Missense_Mutation p.G460C 0.20 tolerated(0.08) possibly_damaging(0.469) TCGA-77-8133-01 22 38823083 38823083 T A KCNJ4 Missense_Mutation p.E352V 0.36 deleterious(0) possibly_damaging(0.724) TCGA-77-8133-01 22 40055040 40055040 G A CACNA1I Missense_Mutation p.R750H 0.28 deleterious(0) possibly_damaging(0.812) TCGA-77-8133-01 2 103136389 103136389 C A SLC9A4 Missense_Mutation p.S598Y 0.20 deleterious(0.01) benign(0.013) TCGA-77-8133-01 2 109098194 109098194 T G GCC2 Missense_Mutation p.D1034E 0.43 deleterious(0.02) benign(0.089) TCGA-77-8133-01 2 125627257 125627257 C A CNTNAP5 Missense_Mutation p.D1117E 0.30 deleterious(0.01) possibly_damaging(0.816) TCGA-77-8133-01 2 136072971 136072971 G T ZRANB3 Silent p.V269V 0.27 TCGA-77-8133-01 2 137814609 137814609 G A THSD7B Silent p.L253L 0.16 TCGA-77-8133-01 2 137872807 137872807 G A THSD7B Missense_Mutation p.R438Q 0.31 deleterious(0) possibly_damaging(0.746) TCGA-77-8133-01 2 141128762 141128762 C A LRP1B Missense_Mutation p.D3621Y 0.33 probably_damaging(0.961) TCGA-77-8133-01 2 153435479 153435479 G T FMNL2 Splice_Site p.X261_splice 0.39 TCGA-77-8133-01 2 15555716 15555716 C A NBAS Missense_Mutation p.G964V 0.44 tolerated(0.1) benign(0.295) TCGA-77-8133-01 2 158401014 158401014 C A ACVR1C Missense_Mutation p.A296S 0.08 tolerated(0.12) benign(0.1) TCGA-77-8133-01 2 166245754 166245754 T C SCN2A Missense_Mutation p.I1813T 0.13 deleterious(0) probably_damaging(0.995) TCGA-77-8133-01 2 166904163 166904163 C A SCN1A Missense_Mutation p.D382Y 0.21 deleterious(0) probably_damaging(1) TCGA-77-8133-01 2 176948454 176948454 G C EVX2 Missense_Mutation p.H17Q 0.12 tolerated(0.24) possibly_damaging(0.854) TCGA-77-8133-01 2 179255841 179255841 G T OSBPL6 Silent p.V806V 0.15 TCGA-77-8133-01 2 179415880 179415880 C T TTN Missense_Mutation p.E30460K 0.21 TCGA-77-8133-01 2 179581837 179581837 G T TTN Missense_Mutation p.Q8542K 0.25 TCGA-77-8133-01 2 179595732 179595732 T C TTN Missense_Mutation p.K5887R 0.17 TCGA-77-8133-01 2 179600380 179600380 C T TTN Silent p.G4931G 0.15 TCGA-77-8133-01 2 179718220 179718220 C G CCDC141 Silent p.P1064P 0.31 TCGA-77-8133-01 2 185801588 185801588 C A ZNF804A Missense_Mutation p.Q489K 0.05 tolerated(0.95) benign(0.005) TCGA-77-8133-01 2 1915829 1915829 G T MYT1L Missense_Mutation p.R556S 0.14 tolerated(0.12) probably_damaging(0.954) TCGA-77-8133-01 2 203661643 203661643 C T ICA1L Missense_Mutation p.G319R 0.44 tolerated(0.31) benign(0.023) TCGA-77-8133-01 2 211541764 211541764 T C CPS1 Silent p.I1442I 0.20 TCGA-77-8133-01 2 211542689 211542689 A T CPS1 Missense_Mutation p.S1501C 0.22 tolerated(0.05) benign(0.35) TCGA-77-8133-01 2 216236845 216236845 G T FN1 Nonsense_Mutation p.Y2167* 0.15 TCGA-77-8133-01 2 219924944 219924944 G T IHH Silent p.T82T 0.32 TCGA-77-8133-01 2 220404953 220404953 C A CHPF Missense_Mutation p.V494L 0.17 deleterious(0.01) possibly_damaging(0.78) TCGA-77-8133-01 2 230910879 230910879 G T SLC16A14 Missense_Mutation p.F321L 0.14 tolerated(0.78) benign(0.023) TCGA-77-8133-01 2 242757778 242757778 G T NEU4 Missense_Mutation p.A300S 0.16 tolerated(0.44) benign(0.001) TCGA-77-8133-01 2 26802313 26802313 T C C2orf70 3'UTR 0.06 TCGA-77-8133-01 2 37032742 37032742 A G VIT Missense_Mutation p.I442V 0.44 tolerated(1) benign(0.011) TCGA-77-8133-01 2 3727464 3727464 G T ALLC Missense_Mutation p.D60Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-77-8133-01 2 56420180 56420180 A C CCDC85A Missense_Mutation p.H282P 0.28 deleterious_low_confidence(0) possibly_damaging(0.451) TCGA-77-8133-01 2 70528016 70528016 C T FAM136A Missense_Mutation p.A62T 0.34 tolerated(0.34) benign(0.25) TCGA-77-8133-01 2 77746603 77746603 G T LRRTM4 Missense_Mutation p.P131Q 0.35 tolerated(0.21) possibly_damaging(0.894) TCGA-77-8133-01 2 97427528 97427528 C T CNNM4 Silent p.L264L 0.31 TCGA-77-8133-01 2 98736202 98736202 A T VWA3B Missense_Mutation p.H173L 0.36 tolerated(0.46) benign(0.02) TCGA-77-8133-01 3 102189292 102189292 C T ZPLD1 Nonsense_Mutation p.Q346* 0.18 TCGA-77-8133-01 3 113795710 113795710 C A QTRTD1 Missense_Mutation p.Q235K 0.30 deleterious(0.05) benign(0.079) TCGA-77-8133-01 3 113955559 113955559 C A ZNF80 Silent p.L121L 0.28 TCGA-77-8133-01 3 119120876 119120876 G T ARHGAP31 Missense_Mutation p.R426L 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-77-8133-01 3 119134184 119134184 G T ARHGAP31 Missense_Mutation p.E1136D 0.06 tolerated(0.25) benign(0.015) TCGA-77-8133-01 3 119150897 119150897 G A TMEM39A Silent p.L466L 0.24 TCGA-77-8133-01 3 124103851 124103851 A G KALRN Missense_Mutation p.M642V 0.08 deleterious(0.01) unknown(0) TCGA-77-8133-01 3 126386015 126386015 A T NUP210P1 RNA 0.26 TCGA-77-8133-01 3 127788454 127788454 C G SEC61A1 Missense_Mutation p.I460M 0.22 tolerated(0.33) benign(0.003) TCGA-77-8133-01 3 130292937 130292937 A G COL6A6 Missense_Mutation p.I1039V 0.19 tolerated(0.38) benign(0.058) TCGA-77-8133-01 3 133119309 133119309 G A BFSP2 Missense_Mutation p.V128I 0.21 tolerated(0.12) benign(0.042) TCGA-77-8133-01 3 133661483 133661483 T C SLCO2A1 Missense_Mutation p.I531V 0.17 tolerated(0.51) benign(0.012) TCGA-77-8133-01 3 134514494 134514494 A G EPHB1 Silent p.L7L 0.46 TCGA-77-8133-01 3 157818062 157818062 T C SHOX2 Silent p.Q222Q 0.28 TCGA-77-8133-01 3 170723771 170723771 G C SLC2A2 Missense_Mutation p.L246V 0.12 deleterious(0) probably_damaging(0.986) TCGA-77-8133-01 3 172477989 172477989 G A ECT2 Missense_Mutation p.R207Q 0.10 deleterious(0.02) probably_damaging(0.975) TCGA-77-8133-01 3 179474867 179474867 G T USP13 Splice_Site p.X650_splice 0.33 TCGA-77-8133-01 3 186937848 186937848 A G MASP1 3'UTR 0.14 TCGA-77-8133-01 3 19556857 19556857 C G KCNH8 Missense_Mutation p.Q827E 0.16 tolerated(0.23) benign(0.145) TCGA-77-8133-01 3 45718477 45718487 TTCTGTCACTC - LIMD1 Frame_Shift_Del p.F653Lfs*33 0.34 TCGA-77-8133-01 3 52429021 52429021 C A DNAH1 Missense_Mutation p.N3638K 0.33 benign(0.345) TCGA-77-8133-01 3 52831941 52831941 A T ITIH3 Nonsense_Mutation p.K220* 0.27 TCGA-77-8133-01 3 97753738 97753738 G C GABRR3 RNA 0.14 TCGA-77-8133-01 3 98251082 98251082 G A GPR15 Missense_Mutation p.D69N 0.32 deleterious(0) probably_damaging(1) TCGA-77-8133-01 4 103228686 103228686 T A SLC39A8 Silent p.I153I 0.30 TCGA-77-8133-01 4 109672114 109672114 C A ETNPPL Missense_Mutation p.G227C 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-77-8133-01 4 115858601 115858601 T G NDST4 Missense_Mutation p.Y427S 0.26 deleterious(0) probably_damaging(0.997) TCGA-77-8133-01 4 1222012 1222012 G A CTBP1 Silent p.I105I 0.12 TCGA-77-8133-01 4 129099597 129099597 G T LARP1B Nonsense_Mutation p.E566* 0.16 TCGA-77-8133-01 4 134073510 134073510 C A PCDH10 Missense_Mutation p.R739S 0.10 deleterious(0.01) possibly_damaging(0.599) TCGA-77-8133-01 4 177081164 177081164 C G WDR17 Missense_Mutation p.Q873E 0.17 tolerated(0.68) benign(0.003) TCGA-77-8133-01 4 187093077 187093077 A G FAM149A Missense_Mutation p.Y462C 0.08 tolerated(0.05) benign(0.093) TCGA-77-8133-01 4 44176799 44176799 G T KCTD8 3'UTR 0.33 TCGA-77-8133-01 4 66189892 66189892 C A EPHA5 Missense_Mutation p.K1018N 0.29 deleterious(0) probably_damaging(0.991) TCGA-77-8133-01 4 71024339 71024339 C A C4orf40 Missense_Mutation p.P124T 0.24 deleterious(0.03) unknown(0) TCGA-77-8133-01 4 71527872 71527872 G T IGJ Missense_Mutation p.S42Y 0.31 deleterious(0) possibly_damaging(0.718) TCGA-77-8133-01 4 85758164 85758165 - G WDFY3 Frame_Shift_Ins p.H165Pfs*4 0.11 TCGA-77-8133-01 5 11346551 11346551 G C CTNND2 Missense_Mutation p.P521A 0.33 tolerated(0.1) possibly_damaging(0.519) TCGA-77-8133-01 5 113831824 113831824 C G KCNN2 Missense_Mutation p.S562C 0.31 tolerated_low_confidence(0.05) unknown(0) TCGA-77-8133-01 5 118451893 118451893 G A DMXL1 Nonsense_Mutation p.W202* 0.46 TCGA-77-8133-01 5 13752301 13752301 T A DNAH5 Missense_Mutation p.D3657V 0.26 probably_damaging(0.942) TCGA-77-8133-01 5 13865790 13865790 C A DNAH5 Nonsense_Mutation p.E1448* 0.27 TCGA-77-8133-01 5 140023223 140023223 G T TMCO6 Missense_Mutation p.G294V 0.45 tolerated(0.1) benign(0.074) TCGA-77-8133-01 5 140181525 140181525 A G PCDHA3 Missense_Mutation p.K248R 0.33 tolerated_low_confidence(0.39) benign(0.039) TCGA-77-8133-01 5 140222120 140222120 A G PCDHA8 Missense_Mutation p.Y405C 0.56 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-77-8133-01 5 140811437 140811437 G T PCDHGA12 Missense_Mutation p.V371L 0.45 tolerated_low_confidence(0.08) possibly_damaging(0.507) TCGA-77-8133-01 5 156589905 156589905 C G FAM71B Silent p.A457A 0.47 TCGA-77-8133-01 5 159776773 159776773 G T C1QTNF2 Missense_Mutation p.T132K 0.40 tolerated(0.78) unknown(0) TCGA-77-8133-01 5 176005482 176005482 G A CDHR2 Missense_Mutation p.G564E 0.55 deleterious(0.04) possibly_damaging(0.651) TCGA-77-8133-01 5 32789480 32789480 C T NPR3 3'UTR 0.28 TCGA-77-8133-01 5 33947385 33947385 G A SLC45A2 Silent p.L417L 0.15 TCGA-77-8133-01 5 3596426 3596426 G T IRX1 Silent p.P69P 0.21 TCGA-77-8133-01 5 36066969 36066969 G A UGT3A2 5'UTR 0.62 TCGA-77-8133-01 5 41004507 41004507 G T MROH2B Silent p.R1379R 0.14 TCGA-77-8133-01 5 78301160 78301160 C A DMGDH Missense_Mutation p.C774F 0.19 tolerated(0.58) benign(0.002) TCGA-77-8133-01 5 7873589 7873590 - AG MTRR Frame_Shift_Ins p.N105Kfs*34 0.26 TCGA-77-8133-01 5 9630086 9630086 C A TAS2R1 Missense_Mutation p.G20V 0.11 deleterious(0) probably_damaging(0.999) TCGA-77-8133-01 6 101847194 101847194 G T GRIK2 Missense_Mutation p.R14M 0.15 deleterious(0.01) benign(0.016) TCGA-77-8133-01 6 112437143 112437143 T G LAMA4 Silent p.R1679R 0.31 TCGA-77-8133-01 6 126196061 126196061 A T NCOA7 Nonsense_Mutation p.K100* 0.24 TCGA-77-8133-01 6 131917694 131917694 C A MED23 Missense_Mutation p.Q914H 0.11 deleterious(0.03) probably_damaging(0.996) TCGA-77-8133-01 6 132029788 132029788 G A CTAGE9 3'UTR 0.20 TCGA-77-8133-01 6 136597625 136597625 T A BCLAF1 Missense_Mutation p.R346S 0.09 deleterious(0.01) benign(0.133) TCGA-77-8133-01 6 143093787 143093787 G A HIVEP2 Missense_Mutation p.R697C 0.12 deleterious(0) possibly_damaging(0.81) TCGA-77-8133-01 6 148865572 148865572 C T SASH1 Missense_Mutation p.A989V 0.14 tolerated_low_confidence(0.17) probably_damaging(0.997) TCGA-77-8133-01 6 152738081 152738081 C A SYNE1 Missense_Mutation p.G1831C 0.11 benign(0.001) TCGA-77-8133-01 6 165801931 165801931 C A PDE10A Silent p.L556L 0.34 TCGA-77-8133-01 6 168479616 168479616 G T FRMD1 Missense_Mutation p.H53Q 0.15 tolerated(0.28) benign(0.214) TCGA-77-8133-01 6 24278381 24278381 G T DCDC2 Missense_Mutation p.P273H 0.23 tolerated(0.14) probably_damaging(0.976) TCGA-77-8133-01 6 24596519 24596519 C T KIAA0319 Missense_Mutation p.G128E 0.25 tolerated(0.09) probably_damaging(0.952) TCGA-77-8133-01 6 26392698 26392698 C T BTN2A2 Missense_Mutation p.P359S 0.20 deleterious(0.03) possibly_damaging(0.508) TCGA-77-8133-01 6 27840096 27840096 C A HIST1H3I 5'UTR 0.19 TCGA-77-8133-01 6 28543028 28543028 G T SCAND3 Missense_Mutation p.S485Y 0.14 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-77-8133-01 6 28543837 28543837 T A SCAND3 Silent p.A215A 0.29 TCGA-77-8133-01 6 29365410 29365410 A T OR12D2 3'UTR 0.20 TCGA-77-8133-01 6 32025954 32025954 C A TNXB Missense_Mutation p.G2569V 0.14 benign(0.295) TCGA-77-8133-01 6 3226493 3226493 A G TUBB2B Silent p.Y59Y 0.33 TCGA-77-8133-01 6 33638525 33638525 A G ITPR3 Missense_Mutation p.Y840C 0.38 deleterious(0) probably_damaging(0.999) TCGA-77-8133-01 6 39053774 39053774 C A GLP1R Silent p.P439P 0.15 TCGA-77-8133-01 6 49825077 49825077 C A CRISP1 Missense_Mutation p.A13S 0.30 tolerated(0.08) benign(0.197) TCGA-77-8133-01 6 51774141 51774141 C A PKHD1 Missense_Mutation p.V2208F 0.32 tolerated(0.2) benign(0.041) TCGA-77-8133-01 6 54804946 54804946 C T FAM83B Nonsense_Mutation p.Q393* 0.22 TCGA-77-8133-01 6 70890353 70890353 G C COL19A1 Missense_Mutation p.G905R 0.18 deleterious(0) probably_damaging(1) TCGA-77-8133-01 6 70981400 70981400 C - COL9A1 Frame_Shift_Del p.T368Qfs*11 0.20 TCGA-77-8133-01 6 7583382 7583382 A T DSP Missense_Mutation p.T1963S 0.41 benign(0) TCGA-77-8133-01 6 75890819 75890819 T C COL12A1 Missense_Mutation p.K667R 0.37 benign(0.101) TCGA-77-8133-01 6 99283516 99283516 A G POU3F2 Missense_Mutation p.H256R 0.35 deleterious(0.03) possibly_damaging(0.777) TCGA-77-8133-01 6 99283911 99283911 G T POU3F2 Missense_Mutation p.A388S 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-77-8133-01 7 100087052 100087052 G - NYAP1 Frame_Shift_Del p.V572Cfs*2 0.22 TCGA-77-8133-01 7 100244908 100244928 CTGAAATCCCAGCGGAGGTGG - ACTL6B Splice_Site p.X254_splice 0.27 TCGA-77-8133-01 7 102738847 102738847 A G ARMC10 Missense_Mutation p.I293M 0.09 tolerated(0.14) benign(0.038) TCGA-77-8133-01 7 103202085 103202085 A T RELN Missense_Mutation p.F1808Y 0.40 deleterious(0) probably_damaging(0.983) TCGA-77-8133-01 7 106545842 106545842 C A PIK3CG 3'UTR 0.34 TCGA-77-8133-01 7 116371754 116371754 G A MET Silent p.A411A 0.29 TCGA-77-8133-01 7 11675890 11675890 G A THSD7A Missense_Mutation p.R297C 0.27 deleterious(0) possibly_damaging(0.841) TCGA-77-8133-01 7 119914774 119914774 C A KCND2 Missense_Mutation p.P30T 0.26 tolerated(0.09) benign(0.002) TCGA-77-8133-01 7 123152399 123152399 C A IQUB Splice_Site 0.22 TCGA-77-8133-01 7 137148343 137148343 C A DGKI Missense_Mutation p.W884L 0.18 tolerated(0.72) benign(0.086) TCGA-77-8133-01 7 137148345 137148345 C A DGKI Missense_Mutation p.W883C 0.19 tolerated(0.19) benign(0.001) TCGA-77-8133-01 7 141490958 141490958 C G TAS2R5 Missense_Mutation p.S266C 0.33 deleterious(0.01) probably_damaging(0.995) TCGA-77-8133-01 7 143701675 143701675 G T OR6B1 Nonsense_Mutation p.E196* 0.22 TCGA-77-8133-01 7 143701947 143701947 C A OR6B1 Missense_Mutation p.F286L 0.29 tolerated(0.62) benign(0.012) TCGA-77-8133-01 7 146829532 146829532 A T CNTNAP2 Missense_Mutation p.T427S 0.21 tolerated(1) benign(0.005) TCGA-77-8133-01 7 148907701 148907701 A T ZNF282 Missense_Mutation p.Q286L 0.28 tolerated(0.38) benign(0.002) TCGA-77-8133-01 7 149486421 149486421 C A SSPO RNA 0.22 TCGA-77-8133-01 7 150864217 150864217 C A GBX1 Missense_Mutation p.G140V 0.46 deleterious(0.02) benign(0.052) TCGA-77-8133-01 7 151970813 151970813 T A KMT2C Missense_Mutation p.H330L 0.03 probably_damaging(0.999) TCGA-77-8133-01 7 1855810 1855810 T A MAD1L1 Missense_Mutation p.T685S 0.27 tolerated(0.27) benign(0.086) TCGA-77-8133-01 7 23737822 23737822 G T FAM221A Missense_Mutation p.V217F 0.15 deleterious(0.05) benign(0.123) TCGA-77-8133-01 7 34125438 34125438 C T BMPER Silent p.L493L 0.19 TCGA-77-8133-01 7 38256840 38256840 C G STARD3NL Missense_Mutation p.L163V 0.17 tolerated(0.14) benign(0.393) TCGA-77-8133-01 7 38475943 38475943 C A AMPH Missense_Mutation p.D355Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-77-8133-01 7 4874395 4874395 C A RADIL Missense_Mutation p.R420M 0.23 deleterious(0) probably_damaging(0.976) TCGA-77-8133-01 7 72856654 72856654 T C BAZ1B Missense_Mutation p.K1442E 0.30 deleterious(0.01) probably_damaging(0.993) TCGA-77-8133-01 7 74004195 74004195 A G GTF2IRD1 Missense_Mutation p.N811S 0.16 tolerated(0.29) benign(0) TCGA-77-8133-01 7 7472298 7472298 G A COL28A1 Missense_Mutation p.P632S 0.23 tolerated(0.29) benign(0.369) TCGA-77-8133-01 7 82545122 82545122 C A PCLO Silent p.A4060A 0.30 TCGA-77-8133-01 7 84666252 84666252 G T SEMA3D Missense_Mutation p.R382S 0.29 deleterious(0) possibly_damaging(0.626) TCGA-77-8133-01 7 86808864 86808864 C T DMTF1 Missense_Mutation p.R175C 0.24 deleterious(0.01) possibly_damaging(0.886) TCGA-77-8133-01 8 10465413 10465413 C G RP1L1 Missense_Mutation p.Q2065H 0.11 unknown(0) TCGA-77-8133-01 8 113347695 113347695 G T CSMD3 Missense_Mutation p.P2343Q 0.17 deleterious(0.01) probably_damaging(1) TCGA-77-8133-01 8 113662493 113662493 A G CSMD3 Silent p.S1030S 0.35 TCGA-77-8133-01 8 116632011 116632011 C A TRPS1 Missense_Mutation p.S105I 0.30 deleterious_low_confidence(0.01) benign(0.068) TCGA-77-8133-01 8 13357126 13357126 G T DLC1 Missense_Mutation p.P152H 0.14 tolerated_low_confidence(0.06) benign(0.012) TCGA-77-8133-01 8 133759217 133759217 C A TMEM71 Missense_Mutation p.R134M 0.26 deleterious(0.05) benign(0.126) TCGA-77-8133-01 8 139833607 139833607 A T COL22A1 Silent p.A339A 0.22 TCGA-77-8133-01 8 143993376 143993376 C A CYP11B2 3'UTR 0.26 TCGA-77-8133-01 8 144772238 144772238 T A ZNF707 5'UTR 0.28 TCGA-77-8133-01 8 144941126 144941126 G A EPPK1 Missense_Mutation p.T2099M 0.12 probably_damaging(0.997) TCGA-77-8133-01 8 145608399 145608399 G A ADCK5 Silent p.R78R 0.15 TCGA-77-8133-01 8 145649496 145649496 T A VPS28 Missense_Mutation p.E159V 0.25 deleterious(0) possibly_damaging(0.864) TCGA-77-8133-01 8 22140659 22140659 G A PIWIL2 Missense_Mutation p.G180S 0.17 tolerated(0.71) benign(0) TCGA-77-8133-01 8 26722355 26722355 G T ADRA1A Missense_Mutation p.N44K 0.15 deleterious(0) probably_damaging(1) TCGA-77-8133-01 8 2949083 2949083 T G CSMD1 Missense_Mutation p.T2414P 0.15 probably_damaging(0.936) TCGA-77-8133-01 8 3224728 3224728 G T CSMD1 Missense_Mutation p.H981N 0.15 probably_damaging(0.997) TCGA-77-8133-01 8 53126762 53126762 C A ST18 Splice_Site p.X19_splice 0.17 TCGA-77-8133-01 8 69021852 69021852 T C PREX2 Missense_Mutation p.I1047T 0.24 deleterious(0.01) possibly_damaging(0.866) TCGA-77-8133-01 8 72942189 72942189 C A TRPA1 Missense_Mutation p.G962C 0.23 deleterious(0) probably_damaging(1) TCGA-77-8133-01 8 77764091 77764091 C A ZFHX4 Missense_Mutation p.P1645H 0.28 probably_damaging(0.95) TCGA-77-8133-01 8 87076382 87076382 G A PSKH2 Missense_Mutation p.L222F 0.31 tolerated(0.2) benign(0.005) TCGA-77-8133-01 8 98078235 98078235 A T CPQ Splice_Site p.X352_splice 0.20 TCGA-77-8133-01 9 104356758 104356758 G T PPP3R2 Missense_Mutation p.S152Y 0.12 deleterious(0) probably_damaging(0.998) TCGA-77-8133-01 9 109687204 109687204 G A ZNF462 Silent p.K337K 0.31 TCGA-77-8133-01 9 116018523 116018523 C T SLC31A1 Missense_Mutation p.S32F 0.18 tolerated(0.05) benign(0.023) TCGA-77-8133-01 9 125281961 125281961 T C OR1J4 Missense_Mutation p.L181P 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.529) TCGA-77-8133-01 9 125281963 125281963 G T OR1J4 Missense_Mutation p.V182F 0.18 deleterious_low_confidence(0) benign(0.028) TCGA-77-8133-01 9 13216817 13216817 C A MPDZ Missense_Mutation p.V416F 0.21 deleterious(0) probably_damaging(0.998) TCGA-77-8133-01 9 140040253 140040253 G T GRIN1 Missense_Mutation p.V157F 0.09 tolerated(0.7) benign(0.005) TCGA-77-8133-01 9 140137071 140137071 A T TUBB4B Missense_Mutation p.Q134L 0.07 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-77-8133-01 9 21971018 21971018 G T CDKN2A Missense_Mutation p.P114T 0.38 deleterious(0) probably_damaging(1) TCGA-77-8133-01 9 33799142 33799142 G - PRSS3 Frame_Shift_Del p.D294Tfs*? 0.10 TCGA-77-8133-01 9 35706772 35706772 G A TLN1 Missense_Mutation p.S1694F 0.24 deleterious(0) probably_damaging(0.982) TCGA-77-8133-01 9 71628004 71628004 C A PRKACG Missense_Mutation p.E335D 0.46 tolerated(0.89) benign(0.001) TCGA-77-8133-01 9 73152156 73152156 G A TRPM3 Silent p.N1279N 0.43 TCGA-77-8133-01 9 79960047 79960047 A G VPS13A Silent p.Q2426Q 0.12 TCGA-77-8133-01 9 95782638 95782638 G A FGD3 Missense_Mutation p.E476K 0.14 deleterious(0.02) benign(0.306) TCGA-77-8133-01 X 100807869 100807869 G T ARMCX1 5'UTR 0.56 TCGA-77-8133-01 X 109696083 109696083 G T RGAG1 Missense_Mutation p.M746I 0.61 tolerated(0.14) benign(0.007) TCGA-77-8133-01 X 111195642 111195643 GG T TRPC5 Frame_Shift_Del p.Q3Nfs*21 0.37 TCGA-77-8133-01 X 112024119 112024119 C A AMOT Missense_Mutation p.S823I 0.68 unknown(0) TCGA-77-8133-01 X 112024120 112024120 T A AMOT Missense_Mutation p.S823C 0.67 unknown(0) TCGA-77-8133-01 X 11793155 11793155 G A MSL3 Missense_Mutation p.C508Y 0.62 deleterious(0.01) possibly_damaging(0.73) TCGA-77-8133-01 X 12994939 12994939 G C TMSB4X 3'UTR 0.64 TCGA-77-8133-01 X 137715086 137715086 C A FGF13 Silent p.G231G 0.54 TCGA-77-8133-01 X 152226460 152226460 C G PNMA3 Missense_Mutation p.L350V 0.10 tolerated(0.36) benign(0.037) TCGA-77-8133-01 X 153133887 153133887 G T L1CAM Missense_Mutation p.R525S 0.56 tolerated(0.18) benign(0.319) TCGA-77-8133-01 X 20183112 20183112 T C RPS6KA3 Missense_Mutation p.I557V 0.61 tolerated(0.2) benign(0.407) TCGA-77-8133-01 X 26212825 26212825 C T MAGEB6 Silent p.L288L 0.54 TCGA-77-8133-01 X 34149029 34149029 G T FAM47A Missense_Mutation p.T456N 0.56 tolerated(0.13) possibly_damaging(0.556) TCGA-77-8133-01 X 34149685 34149685 C A FAM47A Silent p.P237P 0.54 TCGA-77-8133-01 X 57934499 57934499 C A ZXDA Nonsense_Mutation p.E786* 0.09 TCGA-77-8133-01 X 76939686 76939686 C T ATRX Silent p.K354K 0.09 TCGA-77-8133-01 X 78010347 78010347 G A LPAR4 5'UTR 0.64 TCGA-77-8133-01 X 79941028 79941028 T C BRWD3 Missense_Mutation p.Q1338R 0.26 tolerated_low_confidence(0.26) benign(0.002) TCGA-77-8133-01 X 83116185 83116185 G A CYLC1 5'UTR 0.68 TCGA-77-8133-01 X 88009295 88009295 C A CPXCR1 Missense_Mutation p.H294N 0.64 deleterious(0) possibly_damaging(0.607) TCGA-77-8136-01 10 102789842 102789842 C T PDZD7 Silent p.R45R 0.14 TCGA-77-8136-01 10 105677308 105677308 G C OBFC1 Silent p.L15L 0.29 TCGA-77-8136-01 10 123247514 123247514 C G FGFR2 Missense_Mutation p.K660N 0.18 deleterious(0) benign(0.369) TCGA-77-8136-01 10 123843100 123843100 C G TACC2 Missense_Mutation p.S362C 0.20 probably_damaging(0.963) TCGA-77-8136-01 10 131761679 131761679 C T EBF3 Silent p.P81P 0.24 TCGA-77-8136-01 10 52005117 52005117 G T ASAH2 Silent p.A75A 0.19 TCGA-77-8136-01 10 55913025 55913025 G T PCDH15 Nonsense_Mutation p.S540* 0.20 TCGA-77-8136-01 10 61831082 61831082 G C ANK3 Missense_Mutation p.P3186R 0.16 probably_damaging(0.994) TCGA-77-8136-01 10 75006545 75006545 C G DNAJC9 Missense_Mutation p.Q74H 0.10 deleterious(0.01) probably_damaging(0.95) TCGA-77-8136-01 10 75289947 75289947 C A USP54 Missense_Mutation p.R594S 0.17 deleterious(0.01) probably_damaging(0.989) TCGA-77-8136-01 10 89574203 89574203 G A ATAD1 Nonsense_Mutation p.Q52* 0.14 TCGA-77-8136-01 10 89717609 89717609 G C PTEN Splice_Site p.X212_splice 0.19 TCGA-77-8136-01 10 98188459 98188459 C G TLL2 Missense_Mutation p.K189N 0.10 tolerated(0.87) benign(0.013) TCGA-77-8136-01 11 102642773 102642773 G T MMP10 Missense_Mutation p.P434T 0.15 tolerated(0.62) benign(0.02) TCGA-77-8136-01 11 108170554 108170554 G A ATM Missense_Mutation p.E1707K 0.12 tolerated(0.27) benign(0.015) TCGA-77-8136-01 11 111942388 111942388 C G PIH1D2 Missense_Mutation p.G91A 0.15 deleterious(0) probably_damaging(0.999) TCGA-77-8136-01 11 1162213 1162213 C G MUC5AC Missense_Mutation p.F574L 0.14 deleterious(0) probably_damaging(0.996) TCGA-77-8136-01 11 116701534 116701534 G T APOC3 Missense_Mutation p.G34V 0.17 deleterious(0.01) probably_damaging(0.972) TCGA-77-8136-01 11 118037752 118037752 G A SCN2B Silent p.V166V 0.15 TCGA-77-8136-01 11 118916339 118916339 C G HYOU1 Missense_Mutation p.G989A 0.16 tolerated_low_confidence(0.34) benign(0.001) TCGA-77-8136-01 11 124626545 124626545 C A ESAM Missense_Mutation p.G115C 0.26 deleterious(0.01) possibly_damaging(0.895) TCGA-77-8136-01 11 125359647 125359647 A G FEZ1 Silent p.D9D 0.18 TCGA-77-8136-01 11 14501218 14501218 C T COPB1 Missense_Mutation p.D419N 0.11 deleterious(0) probably_damaging(0.959) TCGA-77-8136-01 11 16838852 16838852 G A PLEKHA7 Missense_Mutation p.T454M 0.17 deleterious(0) probably_damaging(0.941) TCGA-77-8136-01 11 4842771 4842771 C T OR51F2 Silent p.A52A 0.16 TCGA-77-8136-01 11 5153361 5153361 T A OR52A5 Missense_Mutation p.H171L 0.09 tolerated(0.31) benign(0.001) TCGA-77-8136-01 11 5462242 5462242 A T OR51I1 Missense_Mutation p.L168Q 0.21 deleterious(0) probably_damaging(1) TCGA-77-8136-01 11 55890523 55890523 C T OR8H3 Silent p.I225I 0.07 TCGA-77-8136-01 11 55905081 55905081 G A OR8J3 Silent p.T38T 0.13 TCGA-77-8136-01 11 5602882 5602882 C A OR52B6 Missense_Mutation p.T259N 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-77-8136-01 11 56949712 56949712 G T LRRC55 Silent p.L115L 0.17 TCGA-77-8136-01 11 57983024 57983024 G T OR1S1 Missense_Mutation p.G270C 0.15 deleterious(0) probably_damaging(1) TCGA-77-8136-01 11 57983025 57983025 G T OR1S1 Missense_Mutation p.G270V 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-77-8136-01 11 59224453 59224453 C A OR4D6 Missense_Mutation p.T7N 0.09 tolerated(0.06) probably_damaging(0.996) TCGA-77-8136-01 11 60694797 60694797 G C TMEM132A Silent p.L74L 0.13 TCGA-77-8136-01 11 61506988 61506988 G C DAGLA Missense_Mutation p.E570Q 0.14 tolerated(0.26) benign(0.062) TCGA-77-8136-01 11 61538996 61538996 G A MYRF Silent p.K255K 0.10 TCGA-77-8136-01 11 62066456 62066456 C A SCGB1D4 Missense_Mutation p.M9I 0.11 deleterious(0.01) benign(0.004) TCGA-77-8136-01 11 62343108 62343108 C T TUT1 Missense_Mutation p.E733K 0.14 tolerated(0.21) possibly_damaging(0.775) TCGA-77-8136-01 11 77885308 77885308 T C KCTD21 Missense_Mutation p.E98G 0.17 deleterious(0.04) possibly_damaging(0.684) TCGA-77-8136-01 11 94533319 94533319 G T AMOTL1 Missense_Mutation p.M321I 0.18 tolerated(0.4) benign(0.013) TCGA-77-8136-01 11 95825636 95825636 G A MAML2 Missense_Mutation p.S520L 0.09 benign(0.444) TCGA-77-8136-01 12 10005886 10005886 C G CLEC2B 3'UTR 0.20 TCGA-77-8136-01 12 101295618 101295618 G C ANO4 Missense_Mutation p.V19L 0.10 tolerated_low_confidence(0.43) benign(0) TCGA-77-8136-01 12 102559544 102559544 G T PARPBP Missense_Mutation p.G235V 0.15 deleterious(0) probably_damaging(1) TCGA-77-8136-01 12 109895444 109895444 G A KCTD10 Missense_Mutation p.S173L 0.07 deleterious(0.05) benign(0.084) TCGA-77-8136-01 12 111963098 111963098 G C ATXN2 Missense_Mutation p.I358M 0.22 possibly_damaging(0.77) TCGA-77-8136-01 12 120942706 120942706 G A COQ5 Silent p.L254L 0.06 TCGA-77-8136-01 12 121098602 121098602 G C CABP1 Missense_Mutation p.D300H 0.17 tolerated(0.41) benign(0.136) TCGA-77-8136-01 12 123806175 123806175 C T SBNO1 Missense_Mutation p.E744K 0.14 tolerated(0.36) benign(0.001) TCGA-77-8136-01 12 130839474 130839474 G T PIWIL1 Missense_Mutation p.D405Y 0.16 deleterious(0.02) possibly_damaging(0.894) TCGA-77-8136-01 12 14959004 14959004 G A SMCO3 Missense_Mutation p.S204L 0.09 deleterious(0.05) benign(0.116) TCGA-77-8136-01 12 18847950 18847950 T A PLCZ1 Missense_Mutation p.N452I 0.13 deleterious(0) probably_damaging(1) TCGA-77-8136-01 12 26784969 26784969 G A ITPR2 Missense_Mutation p.H922Y 0.11 tolerated(0.29) probably_damaging(0.916) TCGA-77-8136-01 12 2968672 2968672 C G FOXM1 Missense_Mutation p.R513T 0.10 deleterious(0.03) probably_damaging(0.917) TCGA-77-8136-01 12 53818183 53818183 G A AMHR2 Missense_Mutation p.R54H 0.17 tolerated(0.1) possibly_damaging(0.812) TCGA-77-8136-01 12 53818205 53818206 - T AMHR2 Frame_Shift_Ins p.G63Wfs*21 0.19 TCGA-77-8136-01 12 53925646 53925646 G C ATF7 Nonsense_Mutation p.S270* 0.21 TCGA-77-8136-01 12 55026969 55026969 C A LACRT Missense_Mutation p.G36V 0.16 tolerated_low_confidence(0.32) probably_damaging(0.979) TCGA-77-8136-01 12 55026970 55026970 C A LACRT Missense_Mutation p.G36W 0.16 deleterious_low_confidence(0.04) probably_damaging(0.984) TCGA-77-8136-01 12 55523851 55523851 C T OR9K2 Missense_Mutation p.S100F 0.15 deleterious(0.01) probably_damaging(0.966) TCGA-77-8136-01 12 56031278 56031278 G C OR10P1 Missense_Mutation p.M201I 0.07 tolerated(0.22) benign(0.004) TCGA-77-8136-01 12 62918346 62918346 G C MON2 Missense_Mutation p.D346H 0.15 deleterious(0) probably_damaging(0.97) TCGA-77-8136-01 12 62931019 62931019 A T MON2 Silent p.A663A 0.09 TCGA-77-8136-01 12 66725325 66725325 C T HELB Missense_Mutation p.S1021L 0.06 tolerated(0.23) benign(0.015) TCGA-77-8136-01 12 6753466 6753466 G C ACRBP Missense_Mutation p.L261V 0.12 tolerated(0.22) benign(0.006) TCGA-77-8136-01 12 69652645 69652645 C G CPSF6 Missense_Mutation p.P324A 0.09 tolerated(0.07) unknown(0) TCGA-77-8136-01 12 72265864 72265864 A T TBC1D15 Missense_Mutation p.Q15H 0.08 tolerated(0.27) probably_damaging(0.999) TCGA-77-8136-01 12 7585182 7585182 G T CD163L1 Missense_Mutation p.P199Q 0.25 deleterious(0.02) probably_damaging(0.997) TCGA-77-8136-01 12 8376662 8376662 C T FAM90A1 Silent p.A91A 0.06 TCGA-77-8136-01 12 85264443 85264443 G A SLC6A15 Nonsense_Mutation p.Q437* 0.17 TCGA-77-8136-01 12 89993069 89993069 G C ATP2B1 Nonsense_Mutation p.S1059* 0.13 TCGA-77-8136-01 12 9085261 9085261 A T PHC1 Missense_Mutation p.H403L 0.14 deleterious_low_confidence(0) unknown(0) TCGA-77-8136-01 12 91572350 91572350 A C DCN 5'UTR 0.09 TCGA-77-8136-01 12 93206820 93206820 G A EEA1 Missense_Mutation p.A660V 0.12 deleterious(0) possibly_damaging(0.877) TCGA-77-8136-01 12 96350637 96350637 G T AMDHD1 Missense_Mutation p.D162Y 0.08 deleterious(0) possibly_damaging(0.697) TCGA-77-8136-01 13 111289570 111289570 C G CARKD Silent p.L289L 0.21 TCGA-77-8136-01 13 25284676 25284676 G C ATP12A Missense_Mutation p.D954H 0.20 deleterious(0) probably_damaging(0.993) TCGA-77-8136-01 13 32745230 32745230 G C FRY Missense_Mutation p.W658C 0.14 deleterious(0) probably_damaging(0.979) TCGA-77-8136-01 13 37427791 37427791 C T SMAD9 Missense_Mutation p.G342E 0.15 deleterious(0.03) possibly_damaging(0.851) TCGA-77-8136-01 13 37605911 37605911 G A SUPT20H Nonsense_Mutation p.Q277* 0.17 TCGA-77-8136-01 13 37606006 37606006 G C SUPT20H Missense_Mutation p.S245C 0.10 deleterious(0) benign(0.133) TCGA-77-8136-01 13 46701840 46701840 G A LCP1 Silent p.A590A 0.21 TCGA-77-8136-01 13 50623322 50623322 C G DLEU2 Intron 0.38 TCGA-77-8136-01 13 77566172 77566172 G A CLN5 Missense_Mutation p.R29H 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.715) TCGA-77-8136-01 13 77725057 77725057 G C MYCBP2 Missense_Mutation p.Q2277E 0.28 possibly_damaging(0.603) TCGA-77-8136-01 13 95095728 95095728 G C DCT Nonsense_Mutation p.S481* 0.32 TCGA-77-8136-01 13 97485434 97485434 C A HS6ST3 Missense_Mutation p.S466R 0.40 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-77-8136-01 14 104482405 104482405 G A TDRD9 Missense_Mutation p.D771N 0.21 tolerated(0.11) benign(0.167) TCGA-77-8136-01 14 106478107 106478107 G T IGHV4-4 3'Flank 0.03 TCGA-77-8136-01 14 21550430 21550430 G C ARHGEF40 Silent p.L1093L 0.14 TCGA-77-8136-01 14 21820919 21820919 C G SUPT16H Missense_Mutation p.K1019N 0.17 deleterious(0.01) benign(0.403) TCGA-77-8136-01 14 22102176 22102176 C A OR10G2 Missense_Mutation p.G275W 0.24 deleterious(0) probably_damaging(0.999) TCGA-77-8136-01 14 23342568 23342568 A C LRP10 Missense_Mutation p.Q43P 0.18 tolerated(0.16) possibly_damaging(0.899) TCGA-77-8136-01 14 23857003 23857003 G T MYH6 Missense_Mutation p.L1497I 0.12 deleterious(0.04) benign(0.341) TCGA-77-8136-01 14 38724858 38724858 C G CLEC14A Missense_Mutation p.E124Q 0.23 tolerated(0.13) possibly_damaging(0.775) TCGA-77-8136-01 14 52734856 52734856 C G PTGDR Missense_Mutation p.F108L 0.14 deleterious(0) possibly_damaging(0.822) TCGA-77-8136-01 14 56100020 56100020 G A KTN1 Missense_Mutation p.R430K 0.13 deleterious(0.01) probably_damaging(0.995) TCGA-77-8136-01 14 64493336 64493336 G C SYNE2 Missense_Mutation p.E2098Q 0.07 benign(0.011) TCGA-77-8136-01 14 68219149 68219149 C G ZFYVE26 Missense_Mutation p.C2428S 0.35 deleterious(0) possibly_damaging(0.574) TCGA-77-8136-01 14 75558096 75558096 G T NEK9 Missense_Mutation p.D773E 0.04 tolerated_low_confidence(0.41) benign(0.036) TCGA-77-8136-01 14 81953862 81953862 C G SEL1L Missense_Mutation p.D502H 0.09 deleterious(0) probably_damaging(1) TCGA-77-8136-01 14 88652049 88652049 C A KCNK10 Nonsense_Mutation p.E488* 0.25 TCGA-77-8136-01 14 94158255 94158255 C T UNC79 Missense_Mutation p.T2340I 0.11 deleterious(0) probably_damaging(0.998) TCGA-77-8136-01 14 94545836 94545836 C G DDX24 Missense_Mutation p.E85Q 0.16 tolerated(0.24) possibly_damaging(0.906) TCGA-77-8136-01 14 94640889 94640889 C G PPP4R4 Missense_Mutation p.I29M 0.07 tolerated(0.05) possibly_damaging(0.468) TCGA-77-8136-01 14 95566253 95566253 T C DICER1 Missense_Mutation p.Y1357C 0.11 deleterious(0) probably_damaging(0.996) TCGA-77-8136-01 15 20874865 20874865 T G NBEAP1 RNA 0.04 TCGA-77-8136-01 15 23313162 23313162 C - HERC2P2 RNA 0.35 TCGA-77-8136-01 15 30012181 30012181 C G TJP1 Missense_Mutation p.E935Q 0.12 tolerated_low_confidence(0.23) benign(0.323) TCGA-77-8136-01 15 31818611 31818611 C T OTUD7A Silent p.L271L 0.08 TCGA-77-8136-01 15 33858936 33858936 C A RYR3 Missense_Mutation p.R402S 0.16 benign(0.038) TCGA-77-8136-01 15 41228470 41228470 C A DLL4 Missense_Mutation p.R429S 0.15 deleterious(0.04) probably_damaging(0.92) TCGA-77-8136-01 15 43669260 43669260 G T TUBGCP4 Missense_Mutation p.D127Y 0.13 deleterious(0) benign(0.062) TCGA-77-8136-01 15 43990216 43990216 A G CKMT1A Missense_Mutation p.E294G 0.21 deleterious(0.01) probably_damaging(1) TCGA-77-8136-01 15 44914444 44914444 T C SPG11 Silent p.E806E 0.18 TCGA-77-8136-01 15 45388236 45388236 C G DUOX2 Missense_Mutation p.Q1290H 0.21 deleterious(0) possibly_damaging(0.894) TCGA-77-8136-01 15 45409392 45409392 G A DUOXA2 Missense_Mutation p.G220R 0.23 deleterious(0) possibly_damaging(0.493) TCGA-77-8136-01 15 50534522 50534522 A T HDC Missense_Mutation p.F642I 0.24 tolerated_low_confidence(0.05) probably_damaging(0.998) TCGA-77-8136-01 15 50535120 50535120 G C HDC Missense_Mutation p.D442E 0.12 tolerated(0.24) benign(0.025) TCGA-77-8136-01 15 55972780 55972780 T C PRTG Silent p.P241P 0.14 TCGA-77-8136-01 15 60297468 60297468 C T FOXB1 Silent p.F102F 0.16 TCGA-77-8136-01 15 64067743 64067743 G C HERC1 Missense_Mutation p.S27C 0.13 benign(0.244) TCGA-77-8136-01 15 71535304 71535304 C T THSD4 Missense_Mutation p.H261Y 0.18 tolerated(0.08) benign(0.126) TCGA-77-8136-01 15 74336971 74336971 C G PML Silent p.L757L 0.16 TCGA-77-8136-01 15 74963908 74963908 C G EDC3 Missense_Mutation p.K124N 0.14 tolerated(0.07) benign(0.076) TCGA-77-8136-01 15 79356800 79356800 T - RASGRF1 Frame_Shift_Del p.D116Ifs*24 0.18 TCGA-77-8136-01 15 83788390 83788390 C T TM6SF1 Missense_Mutation p.H119Y 0.14 deleterious(0) probably_damaging(0.986) TCGA-77-8136-01 15 90432312 90432312 C T C15orf38-AP3S2 Missense_Mutation p.D245N 0.14 tolerated_low_confidence(0.07) possibly_damaging(0.841) TCGA-77-8136-01 15 91488154 91488154 C G UNC45A Missense_Mutation p.L354V 0.14 tolerated(1) benign(0.001) TCGA-77-8136-01 16 1550418 1550418 G T TELO2 Missense_Mutation p.R358L 0.15 tolerated(1) benign(0.002) TCGA-77-8136-01 16 20976213 20976213 T A DNAH3 Missense_Mutation p.D2998V 0.19 deleterious(0) probably_damaging(1) TCGA-77-8136-01 16 23226769 23226769 C G SCNN1G Silent p.T643T 0.15 TCGA-77-8136-01 16 24564833 24564833 G C RBBP6 Splice_Site p.X102_splice 0.07 TCGA-77-8136-01 16 29825866 29825866 C G PRRT2 Silent p.L364L 0.23 TCGA-77-8136-01 16 29884568 29884568 G C SEZ6L2 Silent p.L827L 0.18 TCGA-77-8136-01 16 3097480 3097480 C A MMP25 Missense_Mutation p.P55H 0.23 tolerated(0.09) possibly_damaging(0.907) TCGA-77-8136-01 16 31539977 31539977 C G AHSP Missense_Mutation p.H92D 0.17 tolerated(0.22) unknown(0) TCGA-77-8136-01 16 54145789 54145789 T C FTO Missense_Mutation p.S494P 0.28 deleterious(0.04) possibly_damaging(0.685) TCGA-77-8136-01 16 56419891 56419891 C A AMFR Silent p.V440V 0.09 TCGA-77-8136-01 16 67760314 67760314 C G RANBP10 3'UTR 0.13 TCGA-77-8136-01 16 67984869 67984869 G C SLC12A4 Silent p.L466L 0.23 TCGA-77-8136-01 17 10310224 10310224 C A MYH8 Nonsense_Mutation p.E680* 0.26 TCGA-77-8136-01 17 10366281 10366281 C A MYH4 Missense_Mutation p.M303I 0.09 deleterious(0.02) benign(0.261) TCGA-77-8136-01 17 15905321 15905321 C T TTC19 Silent p.I135I 0.18 TCGA-77-8136-01 17 27959281 27959281 C G SSH2 Missense_Mutation p.Q950H 0.17 tolerated_low_confidence(0.21) benign(0.005) TCGA-77-8136-01 17 29508476 29508476 C A NF1 Missense_Mutation p.A208E 0.15 tolerated(0.18) probably_damaging(0.992) TCGA-77-8136-01 17 40832557 40832557 C T CCR10 Missense_Mutation p.D35N 0.26 tolerated(0.34) possibly_damaging(0.669) TCGA-77-8136-01 17 40849630 40849630 C T CNTNAP1 Silent p.C1209C 0.11 TCGA-77-8136-01 17 40935966 40935966 G A WNK4 Missense_Mutation p.R268Q 0.17 deleterious(0) unknown(0) TCGA-77-8136-01 17 4428407 4428407 C A SPNS2 Silent p.R164R 0.21 TCGA-77-8136-01 17 45773537 45773537 G C TBKBP1 Missense_Mutation p.S20T 0.20 tolerated(0.08) benign(0.437) TCGA-77-8136-01 17 49157038 49157038 C G SPAG9 Missense_Mutation p.E111Q 0.21 deleterious(0) possibly_damaging(0.751) TCGA-77-8136-01 17 57288617 57288617 C G SMG8 Nonsense_Mutation p.S402* 0.22 TCGA-77-8136-01 17 58121067 58121067 C A HEATR6 Missense_Mutation p.A1135S 0.32 deleterious(0.01) probably_damaging(0.972) TCGA-77-8136-01 17 58121068 58121068 C T HEATR6 Missense_Mutation p.M1134I 0.31 tolerated(0.19) benign(0.005) TCGA-77-8136-01 17 61973938 61973938 C A CSH1 5'UTR 0.35 TCGA-77-8136-01 17 6929795 6929795 C A BCL6B Nonsense_Mutation p.C303* 0.12 TCGA-77-8136-01 17 7673932 7673932 A C DNAH2 Missense_Mutation p.K1386Q 0.11 probably_damaging(1) TCGA-77-8136-01 17 77808534 77808534 G T CBX4 Missense_Mutation p.H303N 0.32 tolerated(0.28) benign(0.272) TCGA-77-8136-01 17 79094049 79094049 C G AATK Missense_Mutation p.K1229N 0.32 deleterious(0) probably_damaging(0.997) TCGA-77-8136-01 17 79580473 79580473 G A NPLOC4 Missense_Mutation p.S86L 0.29 tolerated(0.06) possibly_damaging(0.894) TCGA-77-8136-01 18 12814252 12814252 T C PTPN2 Missense_Mutation p.M270V 0.21 tolerated(0.07) benign(0.087) TCGA-77-8136-01 18 319966 319966 A G COLEC12 3'UTR 0.25 TCGA-77-8136-01 18 47518685 47518685 G C MYO5B Silent p.L243L 0.17 TCGA-77-8136-01 18 48190247 48190247 G A MAPK4 5'UTR 0.29 TCGA-77-8136-01 18 9887632 9887632 G C TXNDC2 Missense_Mutation p.E386Q 0.12 tolerated(0.49) possibly_damaging(0.714) TCGA-77-8136-01 19 11532486 11532486 G A CCDC151 Silent p.F483F 0.35 TCGA-77-8136-01 19 12954376 12954376 C T MAST1 Silent p.L94L 0.12 TCGA-77-8136-01 19 1430288 1430288 C G DAZAP1 Missense_Mutation p.I266M 0.21 tolerated(0.21) unknown(0) TCGA-77-8136-01 19 1430334 1430334 C T DAZAP1 Nonsense_Mutation p.Q282* 0.11 TCGA-77-8136-01 19 14779648 14779648 C G EMR3 Silent p.L14L 0.14 TCGA-77-8136-01 19 15349924 15349924 G T BRD4 Missense_Mutation p.A1243D 0.36 possibly_damaging(0.665) TCGA-77-8136-01 19 15559007 15559007 C T WIZ Missense_Mutation p.E38K 0.15 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-77-8136-01 19 15559016 15559016 C G WIZ Missense_Mutation p.E35Q 0.15 deleterious_low_confidence(0.01) probably_damaging(0.919) TCGA-77-8136-01 19 2733276 2733276 C A SLC39A3 Missense_Mutation p.G140C 0.17 tolerated(0.05) possibly_damaging(0.621) TCGA-77-8136-01 19 2852519 2852519 C T ZNF555 Silent p.F152F 0.17 TCGA-77-8136-01 19 31039511 31039511 G T ZNF536 Missense_Mutation p.Q995H 0.15 tolerated(0.42) possibly_damaging(0.613) TCGA-77-8136-01 19 33130242 33130242 G C ANKRD27 Intron 0.14 TCGA-77-8136-01 19 35790595 35790595 T A MAG Missense_Mutation p.V185E 0.57 tolerated(0.16) benign(0.206) TCGA-77-8136-01 19 36501812 36501812 G C ALKBH6 Missense_Mutation p.P135R 0.13 deleterious(0) probably_damaging(0.996) TCGA-77-8136-01 19 37676887 37676887 C A ZNF585B Missense_Mutation p.G518W 0.12 deleterious(0) probably_damaging(1) TCGA-77-8136-01 19 38202525 38202525 G C ZNF607 5'UTR 0.14 TCGA-77-8136-01 19 39215069 39215069 A T ACTN4 Splice_Site p.X626_splice 0.17 TCGA-77-8136-01 19 39888222 39888222 G - MED29 Frame_Shift_Del p.V184Sfs*58 0.12 TCGA-77-8136-01 19 40095917 40095917 G C LGALS13 Missense_Mutation p.M64I 0.12 tolerated(0.08) possibly_damaging(0.871) TCGA-77-8136-01 19 40357544 40357544 C T FCGBP Missense_Mutation p.G5257S 0.13 probably_damaging(0.996) TCGA-77-8136-01 19 42133313 42133313 C A CEACAM4 Missense_Mutation p.A7S 0.19 tolerated(0.33) benign(0.055) TCGA-77-8136-01 19 42754046 42754046 G C ERF Missense_Mutation p.F102L 0.18 deleterious(0) probably_damaging(0.999) TCGA-77-8136-01 19 43683028 43683028 C G PSG5 Intron 0.19 TCGA-77-8136-01 19 44237020 44237020 C T SMG9 Missense_Mutation p.E492K 0.15 deleterious(0) possibly_damaging(0.694) TCGA-77-8136-01 19 44501293 44501293 T C ZNF155 Silent p.Y439Y 0.18 TCGA-77-8136-01 19 44739512 44739512 C G ZNF227 Missense_Mutation p.S310C 0.17 deleterious(0.01) possibly_damaging(0.552) TCGA-77-8136-01 19 45767962 45767962 G A MARK4 Missense_Mutation p.E126K 0.14 deleterious(0) benign(0.042) TCGA-77-8136-01 19 47879211 47879211 G T DHX34 Missense_Mutation p.A780S 0.17 tolerated(0.86) benign(0.007) TCGA-77-8136-01 19 4793465 4793465 G C FEM1A Missense_Mutation p.K533N 0.17 tolerated(0.06) benign(0.263) TCGA-77-8136-01 19 49227764 49227764 G C RASIP1 Missense_Mutation p.Q792E 0.21 tolerated(0.7) benign(0.002) TCGA-77-8136-01 19 49637110 49637110 G C PPFIA3 Missense_Mutation p.E407Q 0.28 deleterious(0.02) probably_damaging(0.987) TCGA-77-8136-01 19 50167919 50167919 C T IRF3 Intron 0.09 TCGA-77-8136-01 19 50335384 50335384 G C MED25 Silent p.L448L 0.14 TCGA-77-8136-01 19 51848483 51848483 C G ETFB Missense_Mutation p.K341N 0.18 deleterious_low_confidence(0) benign(0.357) TCGA-77-8136-01 19 53384058 53384058 G A ZNF320 Missense_Mutation p.H441Y 0.19 tolerated(1) benign(0.002) TCGA-77-8136-01 19 53384281 53384281 G A ZNF320 Silent p.F366F 0.17 TCGA-77-8136-01 19 53385227 53385227 G C ZNF320 Missense_Mutation p.S51C 0.11 tolerated(0.18) possibly_damaging(0.862) TCGA-77-8136-01 19 53453212 53453212 C G ZNF816 Missense_Mutation p.A606P 0.29 deleterious(0.01) benign(0.276) TCGA-77-8136-01 19 54407981 54407981 G T PRKCG Silent p.V583V 0.36 TCGA-77-8136-01 19 55512234 55512234 G C NLRP2 Missense_Mutation p.E1053Q 0.15 tolerated(0.39) benign(0.01) TCGA-77-8136-01 19 55741857 55741857 G A PPP6R1 3'UTR 0.11 TCGA-77-8136-01 19 5622646 5622646 C T SAFB2 Silent p.T27T 0.21 TCGA-77-8136-01 19 58238832 58238832 C T ZNF671 Missense_Mutation p.R22Q 0.10 tolerated(0.64) benign(0.006) TCGA-77-8136-01 19 6901965 6901965 C T EMR1 Silent p.F198F 0.19 TCGA-77-8136-01 19 763526 763526 G T MISP Missense_Mutation p.R659L 0.16 deleterious(0) probably_damaging(0.989) TCGA-77-8136-01 19 9000149 9000149 G A MUC16 Silent p.L13536L 0.23 TCGA-77-8136-01 19 9578805 9578805 G C ZNF560 Missense_Mutation p.S273C 0.27 tolerated(0.06) possibly_damaging(0.869) TCGA-77-8136-01 1 11073908 11073908 C T TARDBP Missense_Mutation p.R42C 0.16 deleterious(0.03) benign(0.022) TCGA-77-8136-01 1 110765764 110765764 G A KCNC4 Missense_Mutation p.G286D 0.13 deleterious(0.03) probably_damaging(1) TCGA-77-8136-01 1 114454045 114454045 C T DCLRE1B Silent p.S277S 0.14 TCGA-77-8136-01 1 114506048 114506048 C A HIPK1 Missense_Mutation p.Q715K 0.18 tolerated(0.58) benign(0.015) TCGA-77-8136-01 1 116929944 116929944 C T ATP1A1 Missense_Mutation p.A73V 0.16 tolerated(0.2) benign(0.001) TCGA-77-8136-01 1 119467400 119467400 C A TBX15 Missense_Mutation p.A82S 0.12 deleterious(0.02) possibly_damaging(0.878) TCGA-77-8136-01 1 119923749 119923749 G A HAO2 Missense_Mutation p.R14Q 0.21 tolerated(0.19) benign(0.025) TCGA-77-8136-01 1 143767529 143767529 G T PPIAL4G Missense_Mutation p.T107K 0.10 deleterious_low_confidence(0.01) benign(0.2) TCGA-77-8136-01 1 151789748 151789748 C G RORC Missense_Mutation p.E27Q 0.23 deleterious(0.01) probably_damaging(0.972) TCGA-77-8136-01 1 153955016 153955016 C T RAB13 Missense_Mutation p.D159N 0.16 tolerated(0.06) possibly_damaging(0.745) TCGA-77-8136-01 1 155290588 155290588 C G RUSC1 5'Flank 0.30 TCGA-77-8136-01 1 155838151 155838151 A G SYT11 Missense_Mutation p.S144G 0.10 tolerated(0.16) probably_damaging(0.986) TCGA-77-8136-01 1 157665860 157665860 G A FCRL3 Missense_Mutation p.L368F 0.09 tolerated(0.3) possibly_damaging(0.897) TCGA-77-8136-01 1 158641887 158641887 C A SPTA1 Missense_Mutation p.D484Y 0.14 deleterious(0) probably_damaging(0.988) TCGA-77-8136-01 1 159752084 159752084 G C DUSP23 Missense_Mutation p.E137Q 0.14 deleterious(0.01) benign(0.198) TCGA-77-8136-01 1 159778031 159778031 G C FCRL6 Missense_Mutation p.C39S 0.14 deleterious(0.01) probably_damaging(1) TCGA-77-8136-01 1 161207868 161207868 G A NR1I3 5'UTR 0.15 TCGA-77-8136-01 1 163038714 163038714 G A RGS4 5'UTR 0.27 TCGA-77-8136-01 1 16355301 16355301 C T CLCNKA Silent p.I338I 0.11 TCGA-77-8136-01 1 165218738 165218738 A G LMX1A Missense_Mutation p.F135L 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-77-8136-01 1 169099251 169099251 C G ATP1B1 Missense_Mutation p.P191A 0.10 deleterious(0.03) benign(0.003) TCGA-77-8136-01 1 171756912 171756912 G T METTL13 Missense_Mutation p.R384L 0.08 deleterious(0) probably_damaging(0.999) TCGA-77-8136-01 1 171756913 171756913 G T METTL13 Silent p.R384R 0.08 TCGA-77-8136-01 1 175375706 175375706 C T TNR Missense_Mutation p.G49R 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.828) TCGA-77-8136-01 1 177225240 177225240 T C BRINP2 Missense_Mutation p.L152P 0.18 deleterious(0) probably_damaging(1) TCGA-77-8136-01 1 181759589 181759589 G A CACNA1E Missense_Mutation p.R1932Q 0.21 tolerated(0.54) benign(0.015) TCGA-77-8136-01 1 186017887 186017887 C G HMCN1 Missense_Mutation p.Q2165E 0.29 possibly_damaging(0.515) TCGA-77-8136-01 1 186114534 186114534 G T HMCN1 Splice_Site p.X4756_splice 0.23 TCGA-77-8136-01 1 190068175 190068175 G T BRINP3 Nonsense_Mutation p.S425* 0.32 TCGA-77-8136-01 1 19440385 19440385 C A UBR4 Intron 0.12 TCGA-77-8136-01 1 197404215 197404215 G A CRB1 Silent p.L1074L 0.06 TCGA-77-8136-01 1 200635230 200635230 G C DDX59 Silent p.V213V 0.30 TCGA-77-8136-01 1 20417122 20417122 C G PLA2G5 Silent p.L118L 0.12 TCGA-77-8136-01 1 205897043 205897043 A G SLC26A9 Missense_Mutation p.V363A 0.14 deleterious(0) possibly_damaging(0.794) TCGA-77-8136-01 1 207651399 207651399 G C CR2 Silent p.L1024L 0.56 TCGA-77-8136-01 1 210573935 210573935 C G HHAT Missense_Mutation p.Q134E 0.16 tolerated(0.48) benign(0.059) TCGA-77-8136-01 1 214813817 214813817 G C CENPF Missense_Mutation p.Q712H 0.07 possibly_damaging(0.874) TCGA-77-8136-01 1 215933054 215933054 C G USH2A Missense_Mutation p.G3727R 0.25 benign(0.265) TCGA-77-8136-01 1 2160527 2160527 G C SKI Missense_Mutation p.E108Q 0.09 deleterious(0) probably_damaging(0.998) TCGA-77-8136-01 1 220088904 220088904 C A SLC30A10 Missense_Mutation p.D449Y 0.24 deleterious(0) possibly_damaging(0.553) TCGA-77-8136-01 1 220340874 220340874 C G RAB3GAP2 Missense_Mutation p.E984Q 0.22 tolerated(0.23) benign(0.016) TCGA-77-8136-01 1 220870142 220870142 G A C1orf115 3'UTR 0.46 TCGA-77-8136-01 1 228486315 228486315 G A OBSCN Silent p.G4369G 0.19 TCGA-77-8136-01 1 22924315 22924315 C A EPHA8 Missense_Mutation p.H693N 0.13 deleterious(0.04) probably_damaging(0.999) TCGA-77-8136-01 1 231361244 231361244 T A C1orf131 Missense_Mutation p.K240I 0.06 deleterious(0.03) probably_damaging(0.963) TCGA-77-8136-01 1 232581298 232581298 G A SIPA1L2 Silent p.D1110D 0.23 TCGA-77-8136-01 1 234561500 234561500 G C TARBP1 Silent p.V1121V 0.27 TCGA-77-8136-01 1 236645750 236645750 A G EDARADD Missense_Mutation p.Y150C 0.30 deleterious(0) probably_damaging(0.975) TCGA-77-8136-01 1 236758867 236758867 C A HEATR1 Missense_Mutation p.V355F 0.24 deleterious(0) probably_damaging(0.978) TCGA-77-8136-01 1 236758868 236758868 C G HEATR1 Silent p.L354L 0.24 TCGA-77-8136-01 1 237754065 237754065 G A RYR2 Silent p.A1311A 0.30 TCGA-77-8136-01 1 241798070 241798070 G T CHML Silent p.P333P 0.06 TCGA-77-8136-01 1 248790037 248790037 G C OR2T11 Silent p.V131V 0.28 TCGA-77-8136-01 1 2538422 2538422 C T MMEL1 Missense_Mutation p.E208K 0.16 tolerated(0.47) benign(0.009) TCGA-77-8136-01 1 29519819 29519819 C G MECR 3'Flank 0.10 TCGA-77-8136-01 1 32207449 32207449 C T BAI2 Missense_Mutation p.E513K 0.16 tolerated(0.13) possibly_damaging(0.908) TCGA-77-8136-01 1 38079971 38079971 G T RSPO1 Missense_Mutation p.S107R 0.10 deleterious(0) probably_damaging(0.943) TCGA-77-8136-01 1 38330060 38330060 G C INPP5B Silent p.V850V 0.14 TCGA-77-8136-01 1 39747974 39747974 G C MACF1 Missense_Mutation p.G213A 0.11 possibly_damaging(0.625) TCGA-77-8136-01 1 39798963 39798963 C T MACF1 Intron 0.12 TCGA-77-8136-01 1 41512218 41512218 G C SCMH1 Missense_Mutation p.I443M 0.08 deleterious(0.03) probably_damaging(0.914) TCGA-77-8136-01 1 51822488 51822488 C A EPS15 Missense_Mutation p.A859S 0.18 deleterious(0) probably_damaging(0.994) TCGA-77-8136-01 1 60538308 60538308 G A C1orf87 Missense_Mutation p.S3L 0.21 tolerated(0.06) benign(0.002) TCGA-77-8136-01 1 67838444 67838444 C A IL12RB2 Silent p.S565S 0.07 TCGA-77-8136-01 1 75716910 75716910 C G SLC44A5 Missense_Mutation p.Q110H 0.11 deleterious(0.03) benign(0.38) TCGA-77-8136-01 1 76262628 76262628 C T MSH4 5'UTR 0.10 TCGA-77-8136-01 1 78272753 78272753 C G FAM73A Missense_Mutation p.P202A 0.19 deleterious(0.01) probably_damaging(0.923) TCGA-77-8136-01 1 82456620 82456620 G A LPHN2 Missense_Mutation p.E1335K 0.11 tolerated_low_confidence(0.82) benign(0.363) TCGA-77-8136-01 1 85484715 85484715 C G MCOLN3 3'UTR 0.33 TCGA-77-8136-01 1 87538616 87538616 G C HS2ST1 Splice_Site p.X42_splice 0.14 TCGA-77-8136-01 1 87538637 87538637 G A HS2ST1 Missense_Mutation p.E49K 0.15 tolerated(0.23) benign(0.062) TCGA-77-8136-01 1 9415836 9415836 C G SPSB1 5'UTR 0.15 TCGA-77-8136-01 20 16729598 16729598 G T OTOR Missense_Mutation p.V68L 0.10 deleterious(0) benign(0.204) TCGA-77-8136-01 20 2945649 2945649 A G PTPRA Silent p.G72G 0.21 TCGA-77-8136-01 20 3063642 3063642 G C AVP Missense_Mutation p.F101L 0.30 tolerated(0.07) benign(0) TCGA-77-8136-01 20 307423 307423 C G SOX12 Missense_Mutation p.F285L 0.07 deleterious(0) unknown(0) TCGA-77-8136-01 20 31021110 31021110 C G ASXL1 Nonsense_Mutation p.S370* 0.14 TCGA-77-8136-01 20 31022332 31022332 G T ASXL1 Missense_Mutation p.R606L 0.08 deleterious(0.02) probably_damaging(0.998) TCGA-77-8136-01 20 31022333 31022333 G T ASXL1 Silent p.R606R 0.08 TCGA-77-8136-01 20 33764650 33764650 G C PROCR 3'UTR 0.27 TCGA-77-8136-01 20 34528921 34528921 C G PHF20 Missense_Mutation p.Q950E 0.14 deleterious(0) probably_damaging(0.983) TCGA-77-8136-01 20 42199368 42199368 A C SGK2 Silent p.R218R 0.18 TCGA-77-8136-01 20 47601942 47601942 C G ARFGEF2 Intron 0.11 TCGA-77-8136-01 20 5579396 5579396 G C GPCPD1 Missense_Mutation p.L41V 0.06 tolerated(0.31) benign(0.002) TCGA-77-8136-01 20 60848439 60848439 G C OSBPL2 Missense_Mutation p.L156F 0.14 deleterious(0) probably_damaging(0.982) TCGA-77-8136-01 20 62221428 62221428 C T GMEB2 3'UTR 0.17 TCGA-77-8136-01 21 22804469 22804469 T A NCAM2 Missense_Mutation p.S508T 0.17 deleterious(0.04) benign(0.144) TCGA-77-8136-01 21 45400894 45400894 C G AGPAT3 Missense_Mutation p.Q290E 0.08 tolerated(0.07) benign(0.003) TCGA-77-8136-01 21 45948376 45948376 A G TSPEAR Missense_Mutation p.L294P 0.14 deleterious(0) probably_damaging(0.987) TCGA-77-8136-01 21 46686167 46686167 G A POFUT2 Intron 0.12 TCGA-77-8136-01 21 47775400 47775400 G C PCNT Missense_Mutation p.E599Q 0.28 benign(0.066) TCGA-77-8136-01 21 47809140 47809140 G C PCNT Missense_Mutation p.D1212H 0.06 probably_damaging(0.953) TCGA-77-8136-01 21 47987460 47987460 G C DIP2A Missense_Mutation p.E1547D 0.19 deleterious(0.01) possibly_damaging(0.899) TCGA-77-8136-01 22 18301647 18301647 G C MICAL3 Missense_Mutation p.I1260M 0.22 possibly_damaging(0.715) TCGA-77-8136-01 22 24086250 24086250 C T ZNF70 Missense_Mutation p.G360S 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-77-8136-01 22 31583038 31583038 C G RNF185 5'UTR 0.14 TCGA-77-8136-01 22 39085009 39085009 C G JOSD1 Missense_Mutation p.G147A 0.11 tolerated(0.21) benign(0.038) TCGA-77-8136-01 22 44893473 44893473 G T LDOC1L 5'UTR 0.15 TCGA-77-8136-01 22 50303723 50303723 G A ALG12 Silent p.L161L 0.30 TCGA-77-8136-01 22 50756445 50756445 G T DENND6B Nonsense_Mutation p.C88* 0.10 TCGA-77-8136-01 2 110907810 110907810 G C NPHP1 Silent p.V425V 0.16 TCGA-77-8136-01 2 118705747 118705747 C G CCDC93 Silent p.L386L 0.11 TCGA-77-8136-01 2 127827583 127827583 G C BIN1 Missense_Mutation p.F133L 0.11 deleterious(0.01) benign(0.434) TCGA-77-8136-01 2 160734955 160734955 G C LY75-CD302 Missense_Mutation p.L552V 0.16 tolerated(0.28) benign(0) TCGA-77-8136-01 2 167992491 167992491 G C XIRP2 Missense_Mutation p.V161L 0.12 benign(0.243) TCGA-77-8136-01 2 169828356 169828356 C A ABCB11 Splice_Site p.X546_splice 0.18 TCGA-77-8136-01 2 182400242 182400242 C A ITGA4 Missense_Mutation p.S1029R 0.08 tolerated(0.22) benign(0.001) TCGA-77-8136-01 2 187693314 187693314 T G ZSWIM2 Missense_Mutation p.L433F 0.12 tolerated(0.19) possibly_damaging(0.856) TCGA-77-8136-01 2 197002160 197002160 A G STK17B 3'UTR 0.22 TCGA-77-8136-01 2 200826621 200826621 A G C2orf47 Missense_Mutation p.E256G 0.13 deleterious(0.03) benign(0.059) TCGA-77-8136-01 2 202137407 202137407 G T CASP8 Missense_Mutation p.G212V 0.16 deleterious(0.01) probably_damaging(0.935) TCGA-77-8136-01 2 203417490 203417490 G A BMPR2 Missense_Mutation p.E489K 0.09 deleterious(0) probably_damaging(0.998) TCGA-77-8136-01 2 210565003 210565003 G A MAP2 Missense_Mutation p.A1509T 0.17 tolerated(0.26) benign(0.005) TCGA-77-8136-01 2 234357937 234357937 G C DGKD Missense_Mutation p.Q601H 0.15 tolerated(0.4) benign(0.401) TCGA-77-8136-01 2 240984834 240984834 G T OR6B3 Missense_Mutation p.A219E 0.17 tolerated(0.08) possibly_damaging(0.68) TCGA-77-8136-01 2 25966092 25966092 G C ASXL2 Silent p.L1038L 0.27 TCGA-77-8136-01 2 25966227 25966227 G A ASXL2 Silent p.L993L 0.22 TCGA-77-8136-01 2 25966672 25966672 G C ASXL2 Nonsense_Mutation p.S845* 0.18 TCGA-77-8136-01 2 46378206 46378206 C T PRKCE Silent p.P586P 0.16 TCGA-77-8136-01 2 55559781 55559781 C T CCDC88A Missense_Mutation p.E926K 0.12 deleterious(0) probably_damaging(0.932) TCGA-77-8136-01 2 58468386 58468386 C G FANCL Silent p.S21S 0.14 TCGA-77-8136-01 2 61706003 61706003 G A XPO1 Silent p.V1056V 0.16 TCGA-77-8136-01 2 669787 669787 G A TMEM18 Silent p.A99A 0.16 TCGA-77-8136-01 2 71043705 71043705 G T CLEC4F Missense_Mutation p.Q270K 0.15 tolerated(0.1) possibly_damaging(0.491) TCGA-77-8136-01 2 71838650 71838650 C G DYSF Missense_Mutation p.S1372C 0.14 deleterious(0) probably_damaging(0.941) TCGA-77-8136-01 2 73651668 73651668 G T ALMS1 Missense_Mutation p.R292L 0.09 benign(0) TCGA-77-8136-01 2 85850761 85850761 C T USP39 Intron 0.03 TCGA-77-8136-01 2 85924703 85924703 C T GNLY Silent p.F110F 0.23 TCGA-77-8136-01 2 88890076 88890076 G C EIF2AK3 Silent p.V350V 0.17 TCGA-77-8136-01 2 89399404 89399404 A C IGKV1-16 Missense_Mutation p.L100R 0.11 deleterious(0) probably_damaging(0.991) TCGA-77-8136-01 3 107937448 107937448 T A IFT57 Missense_Mutation p.H143L 0.14 deleterious(0.03) benign(0.102) TCGA-77-8136-01 3 108163694 108163694 C G MYH15 Silent p.V836V 0.13 TCGA-77-8136-01 3 108301868 108301868 C A KIAA1524 Nonsense_Mutation p.G105* 0.12 TCGA-77-8136-01 3 110830972 110830972 A G PVRL3 Missense_Mutation p.I86V 0.13 tolerated(0.07) benign(0.265) TCGA-77-8136-01 3 112357435 112357435 C G CCDC80 Missense_Mutation p.E440Q 0.10 tolerated(0.26) benign(0.196) TCGA-77-8136-01 3 113497634 113497634 G A ATP6V1A Missense_Mutation p.E12K 0.17 tolerated_low_confidence(0.06) benign(0.028) TCGA-77-8136-01 3 113784148 113784148 G A QTRTD1 Missense_Mutation p.G27E 0.15 deleterious(0) probably_damaging(0.999) TCGA-77-8136-01 3 119886106 119886106 G C GPR156 Missense_Mutation p.Q740E 0.16 tolerated(0.28) benign(0.021) TCGA-77-8136-01 3 122004062 122004062 G A CASR 3'UTR 0.23 TCGA-77-8136-01 3 123051504 123051504 G A ADCY5 Silent p.I475I 0.11 TCGA-77-8136-01 3 124103786 124103786 G A KALRN Missense_Mutation p.R620Q 0.20 tolerated(0.45) unknown(0) TCGA-77-8136-01 3 12977334 12977334 C A IQSEC1 Missense_Mutation p.E408D 0.10 tolerated_low_confidence(0.22) benign(0.001) TCGA-77-8136-01 3 134343921 134343921 C G KY Missense_Mutation p.E153Q 0.10 tolerated(0.07) possibly_damaging(0.599) TCGA-77-8136-01 3 137843270 137843270 G T A4GNT Missense_Mutation p.L287M 0.15 deleterious(0.02) probably_damaging(0.949) TCGA-77-8136-01 3 139346488 139346488 C G NMNAT3 5'UTR 0.11 TCGA-77-8136-01 3 14564571 14564571 C T GRIP2 RNA 0.20 TCGA-77-8136-01 3 147113859 147113859 C G ZIC4 Silent p.T206T 0.14 TCGA-77-8136-01 3 152554216 152554216 C T P2RY1 Silent p.F215F 0.10 TCGA-77-8136-01 3 169574122 169574122 A G LRRC31 Splice_Site p.X275_splice 0.08 TCGA-77-8136-01 3 171830356 171830356 G T FNDC3B Missense_Mutation p.L29F 0.10 tolerated(0.08) benign(0.235) TCGA-77-8136-01 3 172631455 172631455 T C SPATA16 Missense_Mutation p.Q528R 0.19 deleterious(0) benign(0.145) TCGA-77-8136-01 3 172634233 172634233 C T SPATA16 Silent p.L459L 0.10 TCGA-77-8136-01 3 179292168 179292168 G C ACTL6A Missense_Mutation p.R130T 0.12 deleterious(0.02) probably_damaging(0.967) TCGA-77-8136-01 3 179460057 179460057 C G USP13 Missense_Mutation p.Q485E 0.15 tolerated(0.5) possibly_damaging(0.484) TCGA-77-8136-01 3 184018147 184018147 C G PSMD2 Nonsense_Mutation p.S91* 0.09 TCGA-77-8136-01 3 184021533 184021533 T G PSMD2 Missense_Mutation p.I440S 0.12 deleterious(0) possibly_damaging(0.616) TCGA-77-8136-01 3 184870595 184870595 G C C3orf70 Missense_Mutation p.S6W 0.09 deleterious_low_confidence(0) benign(0.093) TCGA-77-8136-01 3 192516720 192516720 G C MB21D2 Missense_Mutation p.Q311E 0.23 tolerated(0.19) possibly_damaging(0.569) TCGA-77-8136-01 3 195256617 195256617 C T PPP1R2 Missense_Mutation p.E70K 0.11 deleterious(0.01) possibly_damaging(0.658) TCGA-77-8136-01 3 195599274 195599274 C T TNK2 Missense_Mutation p.V505M 0.11 deleterious(0) possibly_damaging(0.616) TCGA-77-8136-01 3 196664462 196664462 C G NCBP2 Silent p.L106L 0.15 TCGA-77-8136-01 3 30713258 30713258 C T TGFBR2 Nonsense_Mutation p.Q220* 0.18 TCGA-77-8136-01 3 33110348 33110348 C T GLB1 Silent p.L120L 0.17 TCGA-77-8136-01 3 33450737 33450737 G C UBP1 Missense_Mutation p.I270M 0.20 deleterious(0.02) benign(0.142) TCGA-77-8136-01 3 36485108 36485108 G T STAC Missense_Mutation p.D122Y 0.11 deleterious(0) probably_damaging(0.987) TCGA-77-8136-01 3 38938468 38938468 G A SCN11A Silent p.S757S 0.14 TCGA-77-8136-01 3 46008940 46008940 A G FYCO1 Missense_Mutation p.V629A 0.13 tolerated(0.78) benign(0.001) TCGA-77-8136-01 3 4687271 4687271 C T ITPR1 Silent p.D238D 0.18 TCGA-77-8136-01 3 47098470 47098470 C G SETD2 Missense_Mutation p.Q2268H 0.14 deleterious(0) probably_damaging(0.994) TCGA-77-8136-01 3 48728893 48728893 C G IP6K2 Missense_Mutation p.E151Q 0.12 tolerated(0.46) benign(0.055) TCGA-77-8136-01 3 56600692 56600692 A G CCDC66 Silent p.K205K 0.17 TCGA-77-8136-01 3 58487029 58487029 G A KCTD6 Silent p.K128K 0.20 TCGA-77-8136-01 3 73453540 73453540 C A PDZRN3 Missense_Mutation p.G309C 0.16 deleterious(0) probably_damaging(1) TCGA-77-8136-01 3 95374339 95374339 C T MTHFD2P1 RNA 0.09 TCGA-77-8136-01 3 9757025 9757025 C T CPNE9 Nonsense_Mutation p.Q249* 0.16 TCGA-77-8136-01 3 97887759 97887759 G T OR5H15 Missense_Mutation p.W72C 0.10 tolerated(1) benign(0.005) TCGA-77-8136-01 3 9953275 9953275 C G IL17RE Silent p.V407V 0.14 TCGA-77-8136-01 4 113303672 113303672 G A ALPK1 Silent p.L80L 0.21 TCGA-77-8136-01 4 119660340 119660340 C T SEC24D Missense_Mutation p.E781K 0.16 deleterious(0.02) possibly_damaging(0.563) TCGA-77-8136-01 4 122824065 122824065 C T TRPC3 Missense_Mutation p.C802Y 0.12 deleterious(0.02) benign(0.129) TCGA-77-8136-01 4 15444292 15444292 C A C1QTNF7 Missense_Mutation p.L254M 0.24 tolerated(0.12) possibly_damaging(0.858) TCGA-77-8136-01 4 156135919 156135919 G C NPY2R Silent p.V276V 0.11 TCGA-77-8136-01 4 163032540 163032540 C A FSTL5 Missense_Mutation p.K3N 0.14 tolerated_low_confidence(0.08) benign(0.033) TCGA-77-8136-01 4 184367850 184367850 C T CDKN2AIP Missense_Mutation p.S338F 0.16 deleterious(0.01) unknown(0) TCGA-77-8136-01 4 494277 494277 G A PIGG Missense_Mutation p.G83R 0.13 deleterious(0) probably_damaging(0.996) TCGA-77-8136-01 4 494278 494278 G T PIGG Missense_Mutation p.G83V 0.13 deleterious(0) probably_damaging(0.996) TCGA-77-8136-01 4 52861498 52861498 C A LRRC66 Missense_Mutation p.A564S 0.11 tolerated(0.11) benign(0.014) TCGA-77-8136-01 4 83782836 83782836 G A SEC31A Missense_Mutation p.A525V 0.17 tolerated(0.38) benign(0.001) TCGA-77-8136-01 5 11397194 11397194 C T CTNND2 Silent p.Q187Q 0.20 TCGA-77-8136-01 5 123983433 123983433 C G ZNF608 Missense_Mutation p.E882Q 0.19 deleterious(0) probably_damaging(0.996) TCGA-77-8136-01 5 126674835 126674835 C T MEGF10 Missense_Mutation p.S47L 0.12 deleterious(0) benign(0.412) TCGA-77-8136-01 5 13885168 13885168 C G DNAH5 Silent p.L971L 0.10 TCGA-77-8136-01 5 13928224 13928224 C T DNAH5 Missense_Mutation p.D86N 0.17 benign(0.016) TCGA-77-8136-01 5 140044537 140044537 A G WDR55 Missense_Mutation p.S14G 0.25 tolerated_low_confidence(0.08) benign(0.002) TCGA-77-8136-01 5 140165938 140165938 C T PCDHA1 Silent p.L21L 0.12 TCGA-77-8136-01 5 140176688 140176688 C G PCDHA2 Silent p.L713L 0.16 TCGA-77-8136-01 5 140306551 140306551 C A PCDHAC1 Nonsense_Mutation p.S25* 0.20 TCGA-77-8136-01 5 140306844 140306844 C G PCDHAC1 Missense_Mutation p.L123V 0.13 tolerated(0.64) benign(0.002) TCGA-77-8136-01 5 140626604 140626604 C T PCDHB15 Silent p.V486V 0.17 TCGA-77-8136-01 5 140751812 140751812 C T PCDHGB3 Silent p.F617F 0.28 TCGA-77-8136-01 5 14304658 14304658 A G TRIO Missense_Mutation p.H486R 0.11 benign(0.041) TCGA-77-8136-01 5 145718791 145718791 C A POU4F3 Missense_Mutation p.P39Q 0.16 deleterious_low_confidence(0) possibly_damaging(0.776) TCGA-77-8136-01 5 152873491 152873491 G T GRIA1 Missense_Mutation p.G39V 0.20 deleterious(0) probably_damaging(1) TCGA-77-8136-01 5 156381431 156381431 T A TIMD4 Missense_Mutation p.Q132L 0.25 deleterious(0.04) benign(0.042) TCGA-77-8136-01 5 167833249 167833249 G T WWC1 Nonsense_Mutation p.E213* 0.14 TCGA-77-8136-01 5 168119652 168119652 G A SLIT3 Nonsense_Mutation p.Q1046* 0.16 TCGA-77-8136-01 5 171765581 171765581 G A SH3PXD2B Missense_Mutation p.S843F 0.29 tolerated_low_confidence(0.11) benign(0.193) TCGA-77-8136-01 5 180668594 180668594 C T GNB2L1 Silent p.L109L 0.23 TCGA-77-8136-01 5 19473581 19473581 G T CDH18 Missense_Mutation p.S709R 0.11 tolerated(0.07) benign(0.122) TCGA-77-8136-01 5 26902730 26902730 C A CDH9 Missense_Mutation p.V370F 0.11 deleterious(0) possibly_damaging(0.789) TCGA-77-8136-01 5 35065931 35065931 G T PRLR Missense_Mutation p.P377T 0.18 tolerated(0.08) possibly_damaging(0.642) TCGA-77-8136-01 5 35954271 35954271 A C UGT3A1 3'UTR 0.12 TCGA-77-8136-01 5 37052512 37052512 G A NIPBL Silent p.Q2369Q 0.18 TCGA-77-8136-01 5 41155109 41155109 T G C6 Missense_Mutation p.D689A 0.09 deleterious(0) probably_damaging(0.975) TCGA-77-8136-01 5 43645540 43645540 C G NNT Missense_Mutation p.L458V 0.17 tolerated(0.54) benign(0.035) TCGA-77-8136-01 5 52221158 52221158 C T ITGA1 Silent p.L818L 0.18 TCGA-77-8136-01 5 56176584 56176584 G T MAP3K1 Missense_Mutation p.G712C 0.16 deleterious(0) probably_damaging(1) TCGA-77-8136-01 5 6609957 6609957 C A NSUN2 Missense_Mutation p.W435C 0.05 deleterious(0) probably_damaging(0.994) TCGA-77-8136-01 5 66438041 66438041 G C MAST4 Missense_Mutation p.E865Q 0.14 probably_damaging(0.998) TCGA-77-8136-01 5 76264720 76264720 C T CRHBP 3'UTR 0.21 TCGA-77-8136-01 5 79026770 79026770 G C CMYA5 Missense_Mutation p.E728Q 0.21 possibly_damaging(0.857) TCGA-77-8136-01 5 79027419 79027419 C G CMYA5 Missense_Mutation p.P944R 0.15 probably_damaging(0.994) TCGA-77-8136-01 5 95234462 95234462 C T ELL2 Missense_Mutation p.R336Q 0.14 deleterious(0) possibly_damaging(0.847) TCGA-77-8136-01 6 106553125 106553125 G T PRDM1 Missense_Mutation p.G364C 0.15 deleterious(0.04) benign(0.007) TCGA-77-8136-01 6 109820358 109820358 G C AK9 Silent p.V1645V 0.08 TCGA-77-8136-01 6 116973326 116973326 G C ZUFSP Missense_Mutation p.Q331E 0.17 deleterious(0.01) benign(0.067) TCGA-77-8136-01 6 117890904 117890904 C A GOPC Intron 0.10 TCGA-77-8136-01 6 121544432 121544432 G C TBC1D32 Missense_Mutation p.L811V 0.25 deleterious(0) possibly_damaging(0.499) TCGA-77-8136-01 6 121769011 121769011 G A GJA1 Missense_Mutation p.D340N 0.19 tolerated(0.11) benign(0.061) TCGA-77-8136-01 6 130425622 130425622 T C L3MBTL3 Silent p.F596F 0.16 TCGA-77-8136-01 6 132649202 132649202 G T MOXD1 Missense_Mutation p.P299Q 0.11 deleterious(0) probably_damaging(1) TCGA-77-8136-01 6 139175198 139175198 G C ECT2L Missense_Mutation p.E369Q 0.16 deleterious(0.01) possibly_damaging(0.519) TCGA-77-8136-01 6 148865365 148865365 G A SASH1 Missense_Mutation p.R920H 0.22 tolerated_low_confidence(0.56) benign(0.191) TCGA-77-8136-01 6 153043299 153043299 T A MYCT1 Missense_Mutation p.Y207N 0.09 deleterious(0.01) benign(0.169) TCGA-77-8136-01 6 155565142 155565142 C T TIAM2 Intron 0.11 TCGA-77-8136-01 6 160952776 160952776 C G LPA Missense_Mutation p.M2036I 0.14 tolerated(0.58) benign(0.055) TCGA-77-8136-01 6 161519439 161519439 C T MAP3K4 Silent p.I1218I 0.07 TCGA-77-8136-01 6 170140224 170140224 A C TCTE3 3'UTR 0.18 TCGA-77-8136-01 6 27782126 27782126 C G HIST1H2AJ 3'UTR 0.07 TCGA-77-8136-01 6 27792213 27792213 G A HIST1H4J Silent p.%3D 0.12 TCGA-77-8136-01 6 29012386 29012386 A G OR2W1 Silent p.C189C 0.09 TCGA-77-8136-01 6 30153743 30153743 G C TRIM26 Silent p.L510L 0.24 TCGA-77-8136-01 6 30153767 30153767 G A TRIM26 Silent p.F502F 0.22 TCGA-77-8136-01 6 30671865 30671865 C G MDC1 Missense_Mutation p.E1699Q 0.17 tolerated(0.09) probably_damaging(0.99) TCGA-77-8136-01 6 31110378 31110378 C T CCHCR1 Missense_Mutation p.M869I 0.08 tolerated_low_confidence(0.12) benign(0.017) TCGA-77-8136-01 6 31795674 31795674 C G HSPA1B 5'UTR 0.18 TCGA-77-8136-01 6 32809469 32809469 G A PSMB8 Missense_Mutation p.S194L 0.11 tolerated(0.07) benign(0.385) TCGA-77-8136-01 6 33406206 33406206 C G SYNGAP1 Nonsense_Mutation p.S466* 0.23 TCGA-77-8136-01 6 33648332 33648332 G C ITPR3 Missense_Mutation p.V1451L 0.24 tolerated(0.23) benign(0.003) TCGA-77-8136-01 6 35762924 35762924 C T CLPS Silent p.%3D 0.10 TCGA-77-8136-01 6 46766842 46766842 G A MEP1A Splice_Site p.X63_splice 0.10 TCGA-77-8136-01 6 50805741 50805741 G T TFAP2B Missense_Mutation p.G292V 0.13 deleterious(0.02) probably_damaging(0.997) TCGA-77-8136-01 6 88138385 88138385 A T C6ORF165 Missense_Mutation p.Q334H 0.12 deleterious(0.04) possibly_damaging(0.807) TCGA-77-8136-01 6 90371893 90371893 G T MDN1 Missense_Mutation p.S4826R 0.16 benign(0.035) TCGA-77-8136-01 6 90425467 90425467 C G MDN1 Missense_Mutation p.L2255F 0.17 probably_damaging(1) TCGA-77-8136-01 6 90471393 90471393 C G MDN1 Missense_Mutation p.E811Q 0.13 possibly_damaging(0.531) TCGA-77-8136-01 6 90572096 90572096 C G CASP8AP2 RNA 0.06 TCGA-77-8136-01 6 96651355 96651355 C A FUT9 Silent p.I108I 0.12 TCGA-77-8136-01 6 96651356 96651356 C A FUT9 Missense_Mutation p.H109N 0.12 deleterious(0.04) possibly_damaging(0.477) TCGA-77-8136-01 6 99860524 99860524 C A PNISR Missense_Mutation p.M60I 0.08 tolerated(0.37) benign(0.005) TCGA-77-8136-01 7 101200736 101200736 G C COL26A1 Missense_Mutation p.D417H 0.36 tolerated(0.19) probably_damaging(0.979) TCGA-77-8136-01 7 121652901 121652901 G A PTPRZ1 Silent p.E1267E 0.20 TCGA-77-8136-01 7 128486866 128486866 G A FLNC Missense_Mutation p.D1399N 0.17 deleterious(0.02) possibly_damaging(0.498) TCGA-77-8136-01 7 128850845 128850845 G A SMO Silent p.K564K 0.22 TCGA-77-8136-01 7 138239671 138239671 G C TRIM24 Missense_Mutation p.R497T 0.11 tolerated(0.21) possibly_damaging(0.796) TCGA-77-8136-01 7 143095420 143095420 C G EPHA1 Silent p.L486L 0.17 TCGA-77-8136-01 7 152007109 152007109 T A KMT2C Missense_Mutation p.Q264L 0.16 possibly_damaging(0.843) TCGA-77-8136-01 7 23240278 23240278 G C NUPL2 Missense_Mutation p.E396Q 0.19 deleterious(0.03) benign(0.231) TCGA-77-8136-01 7 26237461 26237461 T C HNRNPA2B1 Missense_Mutation p.E11G 0.20 tolerated(0.16) benign(0.291) TCGA-77-8136-01 7 2641096 2641096 G A IQCE Missense_Mutation p.E544K 0.18 deleterious(0.03) probably_damaging(0.956) TCGA-77-8136-01 7 30704692 30704692 G A CRHR2 Silent p.S206S 0.14 TCGA-77-8136-01 7 31123812 31123812 C T ADCYAP1R1 Missense_Mutation p.H129Y 0.13 tolerated(0.9) probably_damaging(0.98) TCGA-77-8136-01 7 42065971 42065971 G C GLI3 Missense_Mutation p.L357V 0.07 deleterious(0.03) possibly_damaging(0.529) TCGA-77-8136-01 7 43918753 43918753 C T URGCP Missense_Mutation p.M103I 0.08 tolerated(1) benign(0.028) TCGA-77-8136-01 7 43918815 43918815 C G URGCP Missense_Mutation p.E83Q 0.16 tolerated(0.09) possibly_damaging(0.897) TCGA-77-8136-01 7 44005510 44005510 C A RP5-1165K10.2 RNA 0.10 TCGA-77-8136-01 7 44144361 44144361 G A AEBP1 Missense_Mutation p.E33K 0.12 deleterious_low_confidence(0) unknown(0) TCGA-77-8136-01 7 44612196 44612196 T C DDX56 Silent p.E177E 0.16 TCGA-77-8136-01 7 50611614 50611614 A T DDC Missense_Mutation p.I57N 0.17 deleterious(0) possibly_damaging(0.653) TCGA-77-8136-01 7 5104087 5104087 C G RBAK Missense_Mutation p.Q334E 0.11 tolerated(0.59) probably_damaging(0.994) TCGA-77-8136-01 7 55874811 55874811 C G SEPT14 Missense_Mutation p.D320H 0.07 deleterious(0) probably_damaging(0.983) TCGA-77-8136-01 7 6820458 6820458 C G RSPH10B2 Silent p.L516L 0.13 TCGA-77-8136-01 7 91842659 91842659 G C KRIT1 Missense_Mutation p.F625L 0.23 deleterious(0.01) probably_damaging(0.927) TCGA-77-8136-01 7 92861799 92861799 C G CCDC132 Missense_Mutation p.L7V 0.11 deleterious_low_confidence(0.02) possibly_damaging(0.525) TCGA-77-8136-01 8 11142547 11142547 C G MTMR9 Silent p.L50L 0.18 TCGA-77-8136-01 8 118147525 118147525 C G SLC30A8 5'Flank 0.18 TCGA-77-8136-01 8 130883656 130883656 G A FAM49B Nonsense_Mutation p.Q54* 0.11 TCGA-77-8136-01 8 131848671 131848671 C A ADCY8 Missense_Mutation p.A843S 0.08 tolerated(0.22) benign(0.311) TCGA-77-8136-01 8 131955704 131955704 G C ADCY8 Missense_Mutation p.L416V 0.09 deleterious(0) probably_damaging(0.993) TCGA-77-8136-01 8 145694188 145694188 C G KIFC2 Missense_Mutation p.Q362E 0.23 tolerated(0.2) probably_damaging(0.977) TCGA-77-8136-01 8 17400847 17400847 G C SLC7A2 Missense_Mutation p.R40T 0.08 tolerated_low_confidence(0.32) benign(0) TCGA-77-8136-01 8 21856669 21856669 C G XPO7 Missense_Mutation p.I832M 0.23 deleterious(0) benign(0.201) TCGA-77-8136-01 8 26237710 26237710 G A BNIP3L 5'Flank 0.14 TCGA-77-8136-01 8 38187279 38187279 C G WHSC1L1 Missense_Mutation p.E400Q 0.23 tolerated(0.29) benign(0.339) TCGA-77-8136-01 8 38277249 38277249 C G FGFR1 Silent p.L393L 0.13 TCGA-77-8136-01 8 38280557 38280557 C G FGFR1 Intron 0.17 TCGA-77-8136-01 8 40532407 40532407 A T ZMAT4 Silent p.A131A 0.12 TCGA-77-8136-01 8 41571722 41571722 G C ANK1 Missense_Mutation p.I617M 0.13 deleterious(0.02) probably_damaging(0.965) TCGA-77-8136-01 8 57353982 57353982 C A PENK Missense_Mutation p.G218V 0.13 deleterious(0.01) probably_damaging(0.962) TCGA-77-8136-01 8 57353983 57353983 C A PENK Missense_Mutation p.G218C 0.13 deleterious(0) probably_damaging(0.999) TCGA-77-8136-01 8 67086759 67086759 C G TRIM55 Silent p.G526G 0.12 TCGA-77-8136-01 8 67577795 67577795 G A VCPIP1 Missense_Mutation p.H467Y 0.15 tolerated(0.7) benign(0.018) TCGA-77-8136-01 8 69688678 69688678 G T C8orf34 Missense_Mutation p.M483I 0.16 deleterious_low_confidence(0.05) benign(0.054) TCGA-77-8136-01 8 71068496 71068496 C A NCOA2 Missense_Mutation p.D702Y 0.20 deleterious(0) probably_damaging(0.996) TCGA-77-8136-01 8 71068799 71068799 C G NCOA2 Missense_Mutation p.E601Q 0.14 tolerated(0.52) benign(0.001) TCGA-77-8136-01 8 87165163 87165163 A G ATP6V0D2 Missense_Mutation p.Q337R 0.16 deleterious(0.01) probably_damaging(1) TCGA-77-8136-01 8 8748046 8748046 C T MFHAS1 Silent p.L841L 0.25 TCGA-77-8136-01 8 93017384 93017384 G C RUNX1T1 Missense_Mutation p.L245V 0.15 tolerated(0.19) benign(0.016) TCGA-77-8136-01 8 98703230 98703230 G A MTDH Missense_Mutation p.E288K 0.21 deleterious(0.01) probably_damaging(0.962) TCGA-77-8136-01 9 100249509 100249509 G A TDRD7 Missense_Mutation p.E991K 0.19 deleterious(0.01) probably_damaging(0.978) TCGA-77-8136-01 9 107456888 107456888 C G OR13D1 Silent p.L62L 0.26 TCGA-77-8136-01 9 114289898 114289898 G A ZNF483 Missense_Mutation p.E75K 0.15 deleterious(0) possibly_damaging(0.621) TCGA-77-8136-01 9 115408030 115408030 G C KIAA1958 Silent p.T424T 0.10 TCGA-77-8136-01 9 121976312 121976312 A C BRINP1 Missense_Mutation p.C269W 0.16 deleterious(0) possibly_damaging(0.53) TCGA-77-8136-01 9 123920378 123920378 G C CNTRL Silent p.L1585L 0.21 TCGA-77-8136-01 9 130101957 130101957 C G GARNL3 Silent p.L354L 0.13 TCGA-77-8136-01 9 131709373 131709373 G C DOLK Silent p.V70V 0.18 TCGA-77-8136-01 9 132566452 132566452 G C TOR1B Missense_Mutation p.K100N 0.14 tolerated(0.11) benign(0.411) TCGA-77-8136-01 9 133907492 133907492 G T LAMC3 Missense_Mutation p.D247Y 0.04 deleterious(0) probably_damaging(0.996) TCGA-77-8136-01 9 135470451 135470451 G C DDX31 Missense_Mutation p.I786M 0.17 tolerated(0.13) benign(0.065) TCGA-77-8136-01 9 135470460 135470460 G A DDX31 Silent p.L783L 0.17 TCGA-77-8136-01 9 34506872 34506872 G A DNAI1 Silent p.Q437Q 0.15 TCGA-77-8136-01 9 36204115 36204115 G A CLTA Missense_Mutation p.E142K 0.12 deleterious(0) probably_damaging(0.96) TCGA-77-8136-01 9 38413303 38413303 C T IGFBPL1 Silent p.G206G 0.13 TCGA-77-8136-01 9 71491601 71491601 G A PIP5K1B Missense_Mutation p.S70N 0.14 deleterious(0) possibly_damaging(0.848) TCGA-77-8136-01 9 88938537 88938537 C T ZCCHC6 Missense_Mutation p.E710K 0.14 deleterious_low_confidence(0.03) benign(0.184) TCGA-77-8136-01 9 91965721 91965721 G C SECISBP2 Silent p.L689L 0.11 TCGA-77-8136-01 9 99007653 99007653 G C HSD17B3 Missense_Mutation p.L194V 0.15 deleterious(0.03) possibly_damaging(0.619) TCGA-77-8136-01 X 106890893 106890893 C T PRPS1 Silent p.S254S 0.10 TCGA-77-8136-01 X 122598863 122598863 G A GRIA3 Missense_Mutation p.E742K 0.15 deleterious(0.02) possibly_damaging(0.576) TCGA-77-8136-01 X 123556461 123556461 C A TENM1 Missense_Mutation p.A1378S 0.12 tolerated(0.09) benign(0.215) TCGA-77-8136-01 X 125299242 125299242 C T DCAF12L2 Missense_Mutation p.M222I 0.16 tolerated(0.32) benign(0.001) TCGA-77-8136-01 X 129063471 129063471 G C UTP14A Missense_Mutation p.E735Q 0.19 deleterious(0.03) possibly_damaging(0.666) TCGA-77-8136-01 X 13061320 13061320 C T FAM9C Missense_Mutation p.E37K 0.16 tolerated(0.06) benign(0.126) TCGA-77-8136-01 X 134303624 134303624 T C CT55 Missense_Mutation p.Y58C 0.14 tolerated(0.12) benign(0.028) TCGA-77-8136-01 X 145076316 145076316 C T MIR888 RNA 0.18 TCGA-77-8136-01 X 145076317 145076317 C A MIR888 RNA 0.19 TCGA-77-8136-01 X 148798135 148798135 C A MAGEA11 Missense_Mutation p.P330H 0.15 deleterious(0.01) benign(0.1) TCGA-77-8136-01 X 20174343 20174343 C T RPS6KA3 Missense_Mutation p.V662I 0.16 tolerated(0.13) benign(0.023) TCGA-77-8136-01 X 2998994 2998994 C G ARSF Missense_Mutation p.L116V 0.20 tolerated(0.29) benign(0.009) TCGA-77-8136-01 X 30268654 30268654 G T MAGEB1 Missense_Mutation p.R15L 0.29 deleterious(0.02) possibly_damaging(0.818) TCGA-77-8136-01 X 30712549 30712549 C T GK Silent p.F149F 0.14 TCGA-77-8136-01 X 34148927 34148927 C A FAM47A Missense_Mutation p.S490I 0.13 deleterious(0.05) probably_damaging(0.975) TCGA-77-8136-01 X 41012332 41012332 G C USP9X Missense_Mutation p.R632T 0.14 tolerated(0.25) benign(0.022) TCGA-77-8136-01 X 43656511 43656511 G C MAOB Missense_Mutation p.S160C 0.20 tolerated(0.1) benign(0.011) TCGA-77-8136-01 X 43698198 43698198 C T MAOB Silent p.Q65Q 0.19 TCGA-77-8136-01 X 54026376 54026376 C T PHF8 Missense_Mutation p.R423K 0.12 tolerated(0.93) possibly_damaging(0.498) TCGA-77-8136-01 X 62917131 62917131 C T ARHGEF9 Silent p.L145L 0.08 TCGA-77-8136-01 X 64718902 64718902 G C ZC3H12B Missense_Mutation p.E258Q 0.15 deleterious(0) probably_damaging(0.958) TCGA-77-8136-01 X 65414993 65414993 C A HEPH Missense_Mutation p.R529S 0.17 deleterious(0) probably_damaging(0.909) TCGA-77-8136-01 X 86773302 86773302 G C KLHL4 Missense_Mutation p.E136Q 0.20 tolerated(0.11) benign(0.071) TCGA-77-8136-01 X 89177261 89177261 C A TGIF2LX Silent p.A59A 0.20 TCGA-77-8136-01 X 90691477 90691477 G T PABPC5 Missense_Mutation p.G301W 0.25 deleterious(0) probably_damaging(0.998) TCGA-77-8138-01 10 101825105 101825105 A T CPN1 Missense_Mutation p.V200E 0.24 deleterious(0) probably_damaging(0.964) TCGA-77-8138-01 10 125805681 125805681 T G CHST15 Silent p.A16A 0.25 TCGA-77-8138-01 10 129905794 129905794 G A MKI67 Missense_Mutation p.T1437I 0.26 deleterious(0) probably_damaging(0.991) TCGA-77-8138-01 10 37486358 37486358 C - ANKRD30A Frame_Shift_Del p.S833Lfs*9 0.09 TCGA-77-8138-01 11 110104172 110104172 G - RDX Frame_Shift_Del p.E461Kfs*3 0.13 TCGA-77-8138-01 11 122805663 122805663 T C C11orf63 Missense_Mutation p.L505P 0.16 tolerated(0.29) benign(0.002) TCGA-77-8138-01 11 1606087 1606087 A T KRTAP5-1 Nonsense_Mutation p.C131* 0.13 TCGA-77-8138-01 11 4703314 4703314 C A OR51E2 Missense_Mutation p.V210L 0.14 tolerated(0.72) benign(0.189) TCGA-77-8138-01 11 4870147 4870147 G A OR51S1 Missense_Mutation p.H98Y 0.12 deleterious(0.02) benign(0.015) TCGA-77-8138-01 11 59189981 59189981 G T OR5A2 Missense_Mutation p.A149D 0.24 deleterious(0) probably_damaging(0.997) TCGA-77-8138-01 11 64111877 64111877 G A CCDC88B Missense_Mutation p.G622R 0.10 deleterious_low_confidence(0.04) possibly_damaging(0.813) TCGA-77-8138-01 11 6431908 6431908 A C APBB1 Missense_Mutation p.W224G 0.10 deleterious(0.01) probably_damaging(0.961) TCGA-77-8138-01 11 68452453 68452453 C T GAL Missense_Mutation p.S21F 0.24 deleterious(0) benign(0.102) TCGA-77-8138-01 11 88780414 88780414 G A GRM5 Silent p.Y209Y 0.13 TCGA-77-8138-01 12 133327284 133327284 G A ANKLE2 Silent p.S264S 0.13 TCGA-77-8138-01 12 13715875 13715875 C T GRIN2B Missense_Mutation p.A1433T 0.38 deleterious(0.01) benign(0.138) TCGA-77-8138-01 12 13906579 13906579 T C GRIN2B Missense_Mutation p.I228V 0.28 tolerated(0.25) benign(0.145) TCGA-77-8138-01 12 6928547 6928547 C T CD4 3'UTR 0.35 TCGA-77-8138-01 12 7286246 7286246 G T CLSTN3 Missense_Mutation p.G89W 0.11 deleterious(0) probably_damaging(0.999) TCGA-77-8138-01 12 78593254 78593254 A G NAV3 Missense_Mutation p.T2198A 0.22 deleterious(0.04) benign(0.003) TCGA-77-8138-01 12 93148019 93148019 G A PLEKHG7 Missense_Mutation p.E157K 0.20 tolerated(0.11) benign(0.12) TCGA-77-8138-01 13 21311927 21311927 C A N6AMT2 Missense_Mutation p.W54C 0.12 deleterious(0) probably_damaging(1) TCGA-77-8138-01 13 41946401 41946401 T G NAA16 Missense_Mutation p.D670E 0.26 tolerated(0.45) benign(0.008) TCGA-77-8138-01 13 88327783 88327783 T A SLITRK5 Missense_Mutation p.I47N 0.09 deleterious(0.02) possibly_damaging(0.836) TCGA-77-8138-01 14 105818774 105818774 G A PACS2 Silent p.E89E 0.08 TCGA-77-8138-01 14 106877872 106877872 G A IGHV4-39 Missense_Mutation p.S41L 0.15 deleterious(0.04) benign(0.111) TCGA-77-8138-01 14 20444156 20444156 T C OR4K15 Missense_Mutation p.M160T 0.27 deleterious(0) possibly_damaging(0.889) TCGA-77-8138-01 14 31582671 31582671 G C HECTD1 Missense_Mutation p.T1959R 0.12 tolerated_low_confidence(0.27) benign(0.015) TCGA-77-8138-01 14 52986000 52986000 A G TXNDC16 Missense_Mutation p.F135S 0.08 deleterious(0.01) benign(0.358) TCGA-77-8138-01 14 56104022 56104022 G T KTN1 Missense_Mutation p.Q552H 0.11 deleterious(0) probably_damaging(0.993) TCGA-77-8138-01 14 64716326 64716326 C T ESR2 Missense_Mutation p.R388Q 0.13 deleterious(0.01) benign(0.197) TCGA-77-8138-01 14 65381138 65381138 G T CHURC1 Silent p.R2R 0.14 TCGA-77-8138-01 14 92084039 92084039 C G CATSPERB Missense_Mutation p.G768R 0.18 deleterious(0) probably_damaging(1) TCGA-77-8138-01 15 62146759 62146759 T C VPS13C Splice_Site p.X3721_splice 0.12 TCGA-77-8138-01 15 62204146 62204146 G A VPS13C Missense_Mutation p.P2870S 0.17 deleterious(0) probably_damaging(1) TCGA-77-8138-01 15 74708326 74708326 C T SEMA7A Missense_Mutation p.G268R 0.13 deleterious(0.05) probably_damaging(0.948) TCGA-77-8138-01 16 16173257 16173257 G A ABCC1 Silent p.Q679Q 0.21 TCGA-77-8138-01 16 68021335 68021335 G T DPEP2 3'UTR 0.18 TCGA-77-8138-01 17 29562666 29562676 CTCGGCATTTA - NF1 Frame_Shift_Del p.R1250Lfs*10 0.12 TCGA-77-8138-01 17 40003572 40003572 C A KLHL10 Missense_Mutation p.N454K 0.17 deleterious(0.01) benign(0.367) TCGA-77-8138-01 17 40475058 40475058 C G STAT3 Missense_Mutation p.G618R 0.06 deleterious(0) probably_damaging(0.952) TCGA-77-8138-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.20 tolerated(0.11) benign(0.308) TCGA-77-8138-01 18 12014278 12014278 G T IMPA2 Silent p.V132V 0.19 TCGA-77-8138-01 18 724626 724626 A G YES1 Missense_Mutation p.V477A 0.09 deleterious(0.03) probably_damaging(0.993) TCGA-77-8138-01 19 14866509 14866509 G A EMR2 Missense_Mutation p.T458I 0.23 deleterious(0) probably_damaging(0.939) TCGA-77-8138-01 19 46032713 46032713 C T OPA3 Silent p.L48L 0.07 TCGA-77-8138-01 19 53652021 53652021 G A ZNF347 Nonsense_Mutation p.Q63* 0.23 TCGA-77-8138-01 19 55785826 55785826 G T HSPBP1 Silent p.R194R 0.25 TCGA-77-8138-01 19 56733522 56733522 A G ZSCAN5A Missense_Mutation p.S305P 0.20 tolerated(0.05) possibly_damaging(0.634) TCGA-77-8138-01 1 103343619 103343619 G C COL11A1 Missense_Mutation p.Q1793E 0.18 unknown(0) TCGA-77-8138-01 1 103491809 103491809 C T COL11A1 Missense_Mutation p.G287E 0.17 benign(0.407) TCGA-77-8138-01 1 171621436 171621436 G - MYOC Frame_Shift_Del p.Q106Rfs*19 0.21 TCGA-77-8138-01 1 172558009 172558009 C T SUCO Missense_Mutation p.P590S 0.19 tolerated(0.18) benign(0.018) TCGA-77-8138-01 1 220970025 220970025 G A MARC1 Missense_Mutation p.A164T 0.21 deleterious(0.03) benign(0.022) TCGA-77-8138-01 1 230492827 230492827 C A PGBD5 Missense_Mutation p.G122V 0.29 deleterious(0.03) benign(0.048) TCGA-77-8138-01 1 230492828 230492828 C G PGBD5 Missense_Mutation p.G122R 0.31 tolerated(0.11) benign(0.01) TCGA-77-8138-01 1 233086368 233086368 G T NTPCR 5'Flank 0.47 TCGA-77-8138-01 1 247902583 247902583 G C OR14K1 Missense_Mutation p.V223L 0.16 deleterious(0.02) probably_damaging(0.975) TCGA-77-8138-01 1 248262959 248262959 G T OR2L13 Silent p.L94L 0.18 TCGA-77-8138-01 1 248262960 248262960 G T OR2L13 Nonsense_Mutation p.G95* 0.18 TCGA-77-8138-01 1 248402254 248402254 C G OR2M4 Missense_Mutation p.F8L 0.08 tolerated(0.59) benign(0.013) TCGA-77-8138-01 1 93089792 93089792 C A EVI5 Missense_Mutation p.A574S 0.12 tolerated(0.05) benign(0.137) TCGA-77-8138-01 20 20232302 20232302 G T C20orf26 Silent p.V741V 0.06 TCGA-77-8138-01 20 39985730 39985730 C A LPIN3 Silent p.T618T 0.06 TCGA-77-8138-01 20 40944636 40944636 A T PTPRT Missense_Mutation p.S622R 0.07 tolerated(0.06) benign(0.001) TCGA-77-8138-01 22 20073513 20073513 G A DGCR8 Silent p.P9P 0.08 TCGA-77-8138-01 2 102793169 102793169 C G IL1R1 Missense_Mutation p.P554A 0.23 tolerated(0.16) benign(0.001) TCGA-77-8138-01 2 107450568 107450568 A T ST6GAL2 Silent p.A326A 0.05 TCGA-77-8138-01 2 109400202 109400202 A G RANBP2 Missense_Mutation p.I3174V 0.12 deleterious(0) probably_damaging(0.992) TCGA-77-8138-01 2 116257149 116257149 C T DPP10 Missense_Mutation p.A116V 0.16 tolerated(0.21) benign(0.002) TCGA-77-8138-01 2 11755253 11755253 C A GREB1 Silent p.S1053S 0.09 TCGA-77-8138-01 2 1652724 1652724 C A PXDN Missense_Mutation p.R943L 0.26 tolerated(0.31) benign(0.036) TCGA-77-8138-01 2 179588326 179588326 T C TTN Silent p.K7167K 0.15 TCGA-77-8138-01 2 179639199 179639199 A T TTN Silent p.G2264G 0.23 TCGA-77-8138-01 2 196915924 196915924 G C DNAH7 Missense_Mutation p.P43R 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.591) TCGA-77-8138-01 2 202248835 202248835 T C TRAK2 Missense_Mutation p.S690G 0.12 deleterious(0) probably_damaging(0.999) TCGA-77-8138-01 2 209025634 209025634 C T CRYGA Missense_Mutation p.R140Q 0.19 tolerated(0.08) benign(0.052) TCGA-77-8138-01 2 225338944 225338944 C A CUL3 3'UTR 0.20 TCGA-77-8138-01 2 225651829 225651829 G C DOCK10 Missense_Mutation p.D1855E 0.04 tolerated(0.28) benign(0.081) TCGA-77-8138-01 2 232457732 232457732 C G C2orf57 Missense_Mutation p.P24A 0.07 tolerated(0.34) possibly_damaging(0.908) TCGA-77-8138-01 2 89309557 89309557 T C IGKV1-9 Silent p.T91T 0.09 TCGA-77-8138-01 3 128598451 128598451 G T ACAD9 5'Flank 0.24 TCGA-77-8138-01 3 147127928 147127928 C A ZIC1 Missense_Mutation p.P10Q 0.28 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-77-8138-01 3 147131353 147131353 C T ZIC1 3'UTR 0.19 TCGA-77-8138-01 3 150908602 150908602 A T MED12L Missense_Mutation p.M618L 0.12 deleterious(0.01) probably_damaging(0.911) TCGA-77-8138-01 3 179462866 179462866 G T USP13 Missense_Mutation p.A524S 0.18 deleterious(0.05) possibly_damaging(0.842) TCGA-77-8138-01 3 59908089 59908089 C G FHIT Missense_Mutation p.D111H 0.13 deleterious(0) probably_damaging(0.997) TCGA-77-8138-01 3 89448677 89448677 C A EPHA3 Intron 0.13 TCGA-77-8138-01 4 37651018 37651018 G C RELL1 Missense_Mutation p.P65A 0.08 deleterious(0.04) probably_damaging(0.995) TCGA-77-8138-01 4 55127373 55127373 A T PDGFRA Missense_Mutation p.E54V 0.11 tolerated(0.05) possibly_damaging(0.716) TCGA-77-8138-01 4 57219688 57219688 C A AASDH Missense_Mutation p.M486I 0.17 tolerated(0.39) benign(0) TCGA-77-8138-01 4 65180461 65180461 T A TECRL Silent p.T152T 0.16 TCGA-77-8138-01 4 6718568 6718568 G A BLOC1S4 Missense_Mutation p.C211Y 0.13 tolerated(0.97) benign(0.207) TCGA-77-8138-01 4 94145894 94145894 G T GRID2 Missense_Mutation p.G365C 0.08 deleterious(0.01) probably_damaging(1) TCGA-77-8138-01 5 126776544 126776544 C T MEGF10 Missense_Mutation p.R783W 0.10 deleterious(0.01) possibly_damaging(0.893) TCGA-77-8138-01 5 13824421 13824421 G A DNAH5 Missense_Mutation p.R2156C 0.07 possibly_damaging(0.898) TCGA-77-8138-01 5 24487886 24487886 T C CDH10 Silent p.L751L 0.31 TCGA-77-8138-01 5 24537633 24537633 G T CDH10 Missense_Mutation p.R128S 0.10 tolerated(0.05) probably_damaging(0.984) TCGA-77-8138-01 5 33576896 33576896 G A ADAMTS12 Missense_Mutation p.R1079C 0.05 tolerated(0.1) benign(0.001) TCGA-77-8138-01 5 33616178 33616178 C G ADAMTS12 Splice_Site p.X715_splice 0.31 TCGA-77-8138-01 5 35086336 35086336 A G PRLR Silent p.N59N 0.12 TCGA-77-8138-01 5 37294470 37294470 A G NUP155 Silent p.P1297P 0.12 TCGA-77-8138-01 5 39202962 39202962 G T FYB Missense_Mutation p.A44E 0.11 deleterious(0.02) possibly_damaging(0.662) TCGA-77-8138-01 5 7820757 7820757 T C ADCY2 Silent p.N1026N 0.11 TCGA-77-8138-01 5 86642541 86642541 G A RASA1 Missense_Mutation p.V368I 0.15 tolerated(0.24) benign(0.345) TCGA-77-8138-01 6 149901075 149901075 A G GINM1 Missense_Mutation p.I179V 0.14 tolerated(0.11) benign(0.023) TCGA-77-8138-01 6 15524695 15524695 C A DTNBP1 Intron 0.24 TCGA-77-8138-01 6 158870118 158870118 G T TULP4 Missense_Mutation p.V212F 0.16 deleterious(0) benign(0.093) TCGA-77-8138-01 6 3273439 3273439 C T SLC22A23 Silent p.T637T 0.25 TCGA-77-8138-01 6 33052883 33052883 T A HLA-DPB1 Missense_Mutation p.L174Q 0.24 deleterious(0.01) probably_damaging(0.969) TCGA-77-8138-01 6 55739650 55739650 A G BMP5 Missense_Mutation p.V5A 0.18 tolerated_low_confidence(0.48) benign(0.001) TCGA-77-8138-01 6 55739651 55739651 C A BMP5 Missense_Mutation p.V5L 0.18 tolerated_low_confidence(0.29) benign(0) TCGA-77-8138-01 6 86350221 86350221 T C SYNCRIP Silent p.E70E 0.19 TCGA-77-8138-01 6 97681853 97681853 C A MMS22L Missense_Mutation p.V396F 0.06 deleterious(0.01) benign(0.073) TCGA-77-8138-01 7 117431963 117431963 A T CTTNBP2 Missense_Mutation p.H429Q 0.10 tolerated(0.12) benign(0.011) TCGA-77-8138-01 7 122765638 122765638 G T SLC13A1 Missense_Mutation p.P409T 0.11 tolerated(0.37) benign(0.077) TCGA-77-8138-01 7 2954915 2954915 C T CARD11 Missense_Mutation p.R932Q 0.09 tolerated(0.12) benign(0.022) TCGA-77-8138-01 7 31378415 31378415 T C NEUROD6 Silent p.P156P 0.08 TCGA-77-8138-01 7 38402989 38402989 C G TRGV2 5'UTR 0.33 TCGA-77-8138-01 8 120605996 120605996 G C ENPP2 Missense_Mutation p.D411E 0.06 deleterious(0) benign(0.309) TCGA-77-8138-01 8 139706798 139706798 G T COL22A1 Missense_Mutation p.Q885K 0.41 possibly_damaging(0.759) TCGA-77-8138-01 8 144810841 144810841 C T FAM83H Missense_Mutation p.G264R 0.39 deleterious(0) probably_damaging(1) TCGA-77-8138-01 8 53085093 53085093 C A ST18 Nonsense_Mutation p.E110* 0.13 TCGA-77-8138-01 9 107379924 107379924 C T OR13C9 Missense_Mutation p.A188T 0.05 tolerated(0.06) benign(0.092) TCGA-77-8138-01 9 139983450 139983450 C T MAN1B1 Missense_Mutation p.S153L 0.04 tolerated(0.3) benign(0.001) TCGA-77-8138-01 9 21201736 21201736 C G IFNA7 Silent p.V143V 0.19 TCGA-77-8138-01 9 72131325 72131325 C A APBA1 Nonsense_Mutation p.E268* 0.13 TCGA-77-8138-01 9 82191094 82191094 T G TLE4 Splice_Site p.X84_splice 0.24 TCGA-77-8138-01 X 89177757 89177757 G C TGIF2LX Missense_Mutation p.V225L 0.35 tolerated(0.13) benign(0.039) TCGA-77-8138-01 Y 14834101 14834101 T G USP9Y Silent p.A102A 0.34 TCGA-77-8139-01 10 106865220 106865220 C A SORCS3 Missense_Mutation p.R387S 0.13 deleterious(0.04) benign(0.229) TCGA-77-8139-01 10 25279394 25279394 G C ENKUR Missense_Mutation p.Q198E 0.10 tolerated(0.33) benign(0.058) TCGA-77-8139-01 10 30604912 30604912 T A MTPAP Missense_Mutation p.N456Y 0.16 tolerated(0.28) benign(0.114) TCGA-77-8139-01 10 50374997 50374997 A T C10orf128 Missense_Mutation p.L52Q 0.22 deleterious(0) probably_damaging(0.997) TCGA-77-8139-01 10 55600087 55600087 G C PCDH15 Missense_Mutation p.L1326V 0.12 deleterious(0.04) probably_damaging(0.95) TCGA-77-8139-01 10 70243249 70243249 G A SLC25A16 Silent p.P313P 0.21 TCGA-77-8139-01 11 10503716 10503716 C A AMPD3 Missense_Mutation p.S187Y 0.12 deleterious(0) benign(0.261) TCGA-77-8139-01 11 113802549 113802549 C G HTR3B Missense_Mutation p.L110V 0.24 tolerated(0.23) possibly_damaging(0.901) TCGA-77-8139-01 11 123900572 123900572 G A OR10G8 Missense_Mutation p.M81I 0.17 tolerated(0.41) benign(0.291) TCGA-77-8139-01 11 125221227 125221227 C T PKNOX2 Missense_Mutation p.P9L 0.23 deleterious_low_confidence(0) possibly_damaging(0.521) TCGA-77-8139-01 11 14991481 14991481 C T CALCA Missense_Mutation p.S76N 0.22 deleterious(0.01) probably_damaging(0.927) TCGA-77-8139-01 11 20070704 20070704 G A NAV2 Missense_Mutation p.V1468I 0.18 tolerated(0.42) benign(0.008) TCGA-77-8139-01 11 30033218 30033218 C A KCNA4 Missense_Mutation p.R336S 0.19 tolerated(0.07) benign(0.057) TCGA-77-8139-01 11 44080175 44080175 G C ACCSL Missense_Mutation p.G517A 0.12 deleterious(0) probably_damaging(0.999) TCGA-77-8139-01 11 5067963 5067963 A T OR52J3 Missense_Mutation p.T70S 0.19 tolerated(0.73) benign(0.003) TCGA-77-8139-01 11 55038292 55038292 G T TRIM48 3'UTR 0.23 TCGA-77-8139-01 11 55433477 55433479 ATG TA OR4C6 Frame_Shift_Del p.M279Yfs*2 0.14 TCGA-77-8139-01 11 55703396 55703396 G A OR5I1 Missense_Mutation p.H161Y 0.25 deleterious(0.02) probably_damaging(0.996) TCGA-77-8139-01 11 56143585 56143585 C T OR8U1 Silent p.L162L 0.16 TCGA-77-8139-01 11 56409471 56409471 A G OR5AP2 Silent p.L149L 0.27 TCGA-77-8139-01 11 59283189 59283189 C A OR4D9 Missense_Mutation p.D268E 0.19 deleterious(0) possibly_damaging(0.558) TCGA-77-8139-01 11 61547318 61547318 C T MYRF Missense_Mutation p.S751L 0.35 tolerated(0.68) benign(0.088) TCGA-77-8139-01 11 69063434 69063434 G T MYEOV Missense_Mutation p.V173F 0.24 deleterious_low_confidence(0.01) benign(0.174) TCGA-77-8139-01 11 85431912 85431912 G C SYTL2 Nonsense_Mutation p.S839* 0.08 TCGA-77-8139-01 11 85622442 85622442 C A CCDC83 Missense_Mutation p.P264H 0.18 deleterious(0.03) probably_damaging(0.982) TCGA-77-8139-01 11 92534801 92534801 G C FAT3 Missense_Mutation p.W2874C 0.26 probably_damaging(1) TCGA-77-8139-01 11 94201029 94201029 C A MRE11A Nonsense_Mutation p.E350* 0.17 TCGA-77-8139-01 11 99932047 99932047 G T CNTN5 Missense_Mutation p.D362Y 0.26 deleterious(0) probably_damaging(0.954) TCGA-77-8139-01 12 111779856 111779856 A G CUX2 Missense_Mutation p.R1220G 0.43 deleterious(0) possibly_damaging(0.765) TCGA-77-8139-01 12 176420 176420 C A IQSEC3 Silent p.P124P 0.15 TCGA-77-8139-01 12 50471866 50471866 G A ASIC1 Missense_Mutation p.V265M 0.10 deleterious(0) probably_damaging(0.946) TCGA-77-8139-01 12 52647385 52647385 C A KRT7 3'Flank 0.06 TCGA-77-8139-01 12 53880831 53880831 C G MAP3K12 Missense_Mutation p.Q115H 0.42 tolerated(0.16) benign(0.039) TCGA-77-8139-01 12 54917204 54917204 A C NCKAP1L Silent p.T635T 0.43 TCGA-77-8139-01 12 56524691 56524691 A C ESYT1 Silent p.R183R 0.11 TCGA-77-8139-01 12 81741551 81741551 T A PPFIA2 Splice_Site p.X665_splice 0.35 TCGA-77-8139-01 13 103492271 103492271 G C BIVM 3'UTR 0.30 TCGA-77-8139-01 13 111099179 111099179 C A COL4A2 Missense_Mutation p.P349H 0.16 probably_damaging(0.993) TCGA-77-8139-01 13 49039340 49039340 G - RB1 Splice_Site p.X776_splice 0.25 TCGA-77-8139-01 13 58208537 58208537 G T PCDH17 Missense_Mutation p.E619D 0.32 tolerated(0.09) benign(0.253) TCGA-77-8139-01 13 92051458 92051458 G - GPC5 Frame_Shift_Del p.A54Qfs*43 0.21 TCGA-77-8139-01 14 105849776 105849776 G T PACS2 Missense_Mutation p.R569L 0.30 deleterious(0) probably_damaging(0.999) TCGA-77-8139-01 14 24631412 24631412 T C IRF9 Missense_Mutation p.V20A 0.18 deleterious(0) possibly_damaging(0.876) TCGA-77-8139-01 14 24727596 24727596 T C TGM1 Splice_Site p.X433_splice 0.27 TCGA-77-8139-01 14 50081258 50081258 G A LRR1 3'UTR 0.33 TCGA-77-8139-01 14 50101260 50101260 G T DNAAF2 Missense_Mutation p.T203K 0.32 tolerated(0.5) probably_damaging(0.999) TCGA-77-8139-01 14 67940169 67940169 C A TMEM229B Missense_Mutation p.A158S 0.21 tolerated_low_confidence(0.34) benign(0.003) TCGA-77-8139-01 14 68250177 68250177 C G ZFYVE26 Missense_Mutation p.C1231S 0.28 deleterious(0) probably_damaging(0.996) TCGA-77-8139-01 14 93154592 93154592 C T RIN3 Silent p.L985L 0.23 TCGA-77-8139-01 14 93723563 93723563 T C BTBD7 Missense_Mutation p.N529S 0.29 tolerated(0.22) benign(0.007) TCGA-77-8139-01 14 96706792 96706792 G C BDKRB2 Missense_Mutation p.A43P 0.26 tolerated(0.5) benign(0.001) TCGA-77-8139-01 15 25299378 25299378 A T SNORD116-2 RNA 0.23 TCGA-77-8139-01 15 28360677 28360677 C T HERC2 Silent p.L4540L 0.20 TCGA-77-8139-01 15 51837942 51837942 C T DMXL2 Silent p.L256L 0.17 TCGA-77-8139-01 15 59182496 59182496 C A SLTM Missense_Mutation p.R688L 0.19 deleterious(0) unknown(0) TCGA-77-8139-01 15 64048908 64048908 C T HERC1 Missense_Mutation p.D421N 0.37 possibly_damaging(0.613) TCGA-77-8139-01 15 79749951 79749951 A G KIAA1024 Missense_Mutation p.R488G 0.18 deleterious(0) benign(0.011) TCGA-77-8139-01 16 11864677 11864677 G C ZC3H7A Missense_Mutation p.S357C 0.10 deleterious(0.02) benign(0.035) TCGA-77-8139-01 16 29885051 29885051 C T SEZ6L2 Splice_Site p.X702_splice 0.28 TCGA-77-8139-01 16 3860667 3860667 G C CREBBP Silent p.V304V 0.11 TCGA-77-8139-01 16 78466627 78466627 C T WWOX Missense_Mutation p.A345V 0.08 tolerated(0.7) benign(0.014) TCGA-77-8139-01 16 84812647 84812647 A G USP10 Missense_Mutation p.T786A 0.14 deleterious(0.05) benign(0.12) TCGA-77-8139-01 16 9858441 9858441 G C GRIN2A Missense_Mutation p.T987S 0.11 tolerated(0.75) benign(0.336) TCGA-77-8139-01 17 18138846 18138846 G C LLGL1 Silent p.L449L 0.18 TCGA-77-8139-01 17 28942934 28942934 C G SMURF2P1 RNA 0.21 TCGA-77-8139-01 17 37566901 37566901 G A MED1 Silent p.L525L 0.13 TCGA-77-8139-01 17 38171996 38171996 C T CSF3 Silent p.T31T 0.33 TCGA-77-8139-01 17 40764159 40764159 G C TUBG1 Missense_Mutation p.E133Q 0.13 deleterious(0.02) possibly_damaging(0.536) TCGA-77-8139-01 17 41131463 41131463 T A PTGES3L-AARSD1 Splice_Site p.X84_splice 0.14 TCGA-77-8139-01 17 46128761 46128761 A G NFE2L1 Missense_Mutation p.Q94R 0.32 tolerated(0.55) benign(0.004) TCGA-77-8139-01 17 67130858 67130858 C T ABCA6 Silent p.E162E 0.10 TCGA-77-8139-01 17 7131298 7131298 C T DVL2 Missense_Mutation p.R367Q 0.09 deleterious(0) probably_damaging(0.963) TCGA-77-8139-01 17 7291967 7291967 G A TNK1 Missense_Mutation p.A579T 0.18 tolerated(1) benign(0.001) TCGA-77-8139-01 17 7579373 7579373 C A TP53 Missense_Mutation p.G105V 0.22 deleterious(0) probably_damaging(1) TCGA-77-8139-01 17 77808811 77808811 C A CBX4 Silent p.A210A 0.12 TCGA-77-8139-01 18 56204897 56204897 T A ALPK2 Missense_Mutation p.E841V 0.07 deleterious(0) possibly_damaging(0.776) TCGA-77-8139-01 18 59203748 59203748 G T CDH20 Missense_Mutation p.D432Y 0.28 deleterious(0.01) probably_damaging(0.911) TCGA-77-8139-01 18 63511185 63511185 G T CDH7 Missense_Mutation p.E373D 0.18 deleterious(0) probably_damaging(0.948) TCGA-77-8139-01 18 74980695 74980695 C A GALR1 Missense_Mutation p.S296Y 0.29 deleterious(0) probably_damaging(1) TCGA-77-8139-01 19 12975893 12975893 C G MAST1 Silent p.L513L 0.13 TCGA-77-8139-01 19 1487822 1487822 C T PCSK4 Silent p.P185P 0.17 TCGA-77-8139-01 19 15272501 15272501 C T NOTCH3 Missense_Mutation p.A1980T 0.21 deleterious(0) probably_damaging(0.984) TCGA-77-8139-01 19 31039609 31039609 C G ZNF536 Missense_Mutation p.A1028G 0.20 deleterious(0.01) benign(0.135) TCGA-77-8139-01 19 35249961 35249961 C T ZNF599 Missense_Mutation p.R582Q 0.08 tolerated(0.8) benign(0.003) TCGA-77-8139-01 19 42221641 42221641 T G CEACAM5 Missense_Mutation p.L409R 0.19 deleterious(0) probably_damaging(1) TCGA-77-8139-01 19 44012147 44012147 C G ETHE1 Missense_Mutation p.E221Q 0.11 tolerated(0.1) benign(0.051) TCGA-77-8139-01 19 44223051 44223051 G A IRGC Missense_Mutation p.G114E 0.43 deleterious(0) probably_damaging(1) TCGA-77-8139-01 19 48343131 48343131 C G CRX Missense_Mutation p.F269L 0.09 deleterious(0.01) benign(0.23) TCGA-77-8139-01 19 54401345 54401345 G A PRKCG Missense_Mutation p.G358R 0.21 deleterious(0.01) probably_damaging(1) TCGA-77-8139-01 19 56423821 56423821 A G NLRP13 Silent p.S454S 0.17 TCGA-77-8139-01 19 56925439 56925439 A T ZNF583 Missense_Mutation p.S41C 0.18 deleterious(0.02) possibly_damaging(0.807) TCGA-77-8139-01 19 57088151 57088151 G T ZNF470 Silent p.P118P 0.23 TCGA-77-8139-01 19 57869164 57869164 C A ZNF304 Missense_Mutation p.H643N 0.11 deleterious(0.04) benign(0.205) TCGA-77-8139-01 19 58773206 58773206 C AT ZNF544 Frame_Shift_Ins p.L412Ifs*29 0.20 TCGA-77-8139-01 19 59074292 59074292 T C MZF1 Missense_Mutation p.Q451R 0.18 tolerated(0.22) probably_damaging(0.988) TCGA-77-8139-01 19 9324848 9324848 G A OR7D4 Silent p.V222V 0.10 TCGA-77-8139-01 19 9325033 9325033 G C OR7D4 Missense_Mutation p.L161V 0.24 deleterious(0.04) benign(0.424) TCGA-77-8139-01 19 9325061 9325061 G A OR7D4 Silent p.I151I 0.20 TCGA-77-8139-01 19 9325109 9325109 G C OR7D4 Missense_Mutation p.I135M 0.12 deleterious(0.01) probably_damaging(0.953) TCGA-77-8139-01 1 113264896 113264896 G T FAM19A3 Missense_Mutation p.W14L 0.25 tolerated_low_confidence(0.21) probably_damaging(0.998) TCGA-77-8139-01 1 120460387 120460387 T A NOTCH2 Splice_Site p.X1977_splice 0.32 TCGA-77-8139-01 1 144859894 144859894 C A PDE4DIP Missense_Mutation p.G2064W 0.08 deleterious(0.02) possibly_damaging(0.908) TCGA-77-8139-01 1 158549408 158549408 G T OR10X1 Silent p.V94V 0.13 TCGA-77-8139-01 1 160054250 160054250 A G KCNJ9 Missense_Mutation p.I144V 0.20 tolerated(0.14) benign(0.021) TCGA-77-8139-01 1 160201087 160201087 C A DCAF8 Missense_Mutation p.R357M 0.10 deleterious(0) probably_damaging(0.96) TCGA-77-8139-01 1 160328001 160328001 C T NCSTN Silent p.I690I 0.12 TCGA-77-8139-01 1 167096136 167096136 C T DUSP27 Nonsense_Mutation p.Q590* 0.13 TCGA-77-8139-01 1 16901144 16901144 G A NBPF1 Silent p.L746L 0.06 TCGA-77-8139-01 1 169923252 169923252 C A KIFAP3 Splice_Site p.X725_splice 0.07 TCGA-77-8139-01 1 171556891 171556891 G A PRRC2C Splice_Site p.X2689_splice 0.11 TCGA-77-8139-01 1 175048770 175048770 C G TNN Missense_Mutation p.C237W 0.50 deleterious(0) probably_damaging(0.999) TCGA-77-8139-01 1 179497568 179497568 T C AXDND1 Splice_Site p.X905_splice 0.19 TCGA-77-8139-01 1 179631306 179631306 A G TDRD5 Missense_Mutation p.N797S 0.22 tolerated(0.06) possibly_damaging(0.858) TCGA-77-8139-01 1 185892727 185892727 T G HMCN1 Missense_Mutation p.D409E 0.13 probably_damaging(0.935) TCGA-77-8139-01 1 198700835 198700836 CT A PTPRC Frame_Shift_Del p.L652Ifs*18 0.19 TCGA-77-8139-01 1 201041893 201041893 G A CACNA1S Silent p.A739A 0.07 TCGA-77-8139-01 1 202464725 202464725 A T PPP1R12B Missense_Mutation p.Q788L 0.37 tolerated(0.06) benign(0.043) TCGA-77-8139-01 1 212799394 212799394 G T FAM71A Missense_Mutation p.G392V 0.09 tolerated(0.1) benign(0.074) TCGA-77-8139-01 1 214170741 214170741 C G PROX1 Missense_Mutation p.A288G 0.09 tolerated(0.39) benign(0.015) TCGA-77-8139-01 1 221879561 221879561 G C DUSP10 Missense_Mutation p.N353K 0.16 deleterious(0) probably_damaging(1) TCGA-77-8139-01 1 224491556 224491556 C G NVL Missense_Mutation p.V277L 0.16 tolerated(0.39) benign(0.033) TCGA-77-8139-01 1 231483612 231483612 G T SPRTN Missense_Mutation p.G131C 0.27 deleterious(0) probably_damaging(1) TCGA-77-8139-01 1 248085229 248085229 G T OR2T8 Missense_Mutation p.G304C 0.23 deleterious(0) possibly_damaging(0.764) TCGA-77-8139-01 1 26695073 26695073 C A ZNF683 Intron 0.12 TCGA-77-8139-01 1 28562689 28562689 G T ATPIF1 5'UTR 0.07 TCGA-77-8139-01 1 36823872 36823872 C T STK40 Missense_Mutation p.D104N 0.16 tolerated(0.05) benign(0.388) TCGA-77-8139-01 1 40028063 40028063 T A PABPC4 Missense_Mutation p.Q565L 0.11 tolerated(0.12) benign(0.12) TCGA-77-8139-01 1 76199310 76199310 G - ACADM Frame_Shift_Del 0.14 TCGA-77-8139-01 20 10025121 10025121 G A ANKEF1 Missense_Mutation p.G209D 0.11 deleterious(0.01) probably_damaging(0.932) TCGA-77-8139-01 20 23807275 23807275 A G CST2 Missense_Mutation p.L8P 0.19 tolerated(0.07) benign(0.002) TCGA-77-8139-01 20 25456923 25456923 C T NINL Missense_Mutation p.E1002K 0.11 tolerated(0.1) benign(0.032) TCGA-77-8139-01 20 3268432 3268432 T C C20orf194 Missense_Mutation p.M778V 0.13 tolerated(1) benign(0.001) TCGA-77-8139-01 20 3677916 3677916 G A SIGLEC1 Silent p.S732S 0.22 TCGA-77-8139-01 20 37546855 37546855 G C PPP1R16B Missense_Mutation p.R417P 0.12 tolerated(0.25) benign(0.179) TCGA-77-8139-01 20 5294715 5294715 G T PROKR2 Missense_Mutation p.L101M 0.10 deleterious(0.01) possibly_damaging(0.794) TCGA-77-8139-01 20 61957501 61957501 G C COL20A1 Missense_Mutation p.R1152S 0.12 deleterious(0.03) probably_damaging(1) TCGA-77-8139-01 20 7864175 7864175 G T HAO1 3'UTR 0.28 TCGA-77-8139-01 22 24629916 24629916 C A GGT5 Missense_Mutation p.C77F 0.31 deleterious(0) probably_damaging(1) TCGA-77-8139-01 22 24836854 24836854 G C ADORA2A Missense_Mutation p.E212D 0.23 tolerated(0.11) benign(0.001) TCGA-77-8139-01 22 37482344 37482344 C T TMPRSS6 Missense_Mutation p.V327M 0.17 deleterious(0.01) possibly_damaging(0.879) TCGA-77-8139-01 2 10350512 10350512 C T C2orf48 Missense_Mutation p.P90L 0.22 tolerated_low_confidence(1) possibly_damaging(0.859) TCGA-77-8139-01 2 128184697 128184697 C A PROC Nonsense_Mutation p.S232* 0.16 TCGA-77-8139-01 2 139308174 139308174 G C SPOPL Missense_Mutation p.W67S 0.14 deleterious(0) probably_damaging(0.995) TCGA-77-8139-01 2 141458066 141458066 C T LRP1B Silent p.R2184R 0.11 TCGA-77-8139-01 2 141460023 141460023 C A LRP1B Missense_Mutation p.W2041C 0.24 probably_damaging(0.926) TCGA-77-8139-01 2 141571226 141571226 C T LRP1B Missense_Mutation p.D1787N 0.09 possibly_damaging(0.539) TCGA-77-8139-01 2 152112214 152112214 G A RBM43 Missense_Mutation p.T16M 0.09 deleterious(0.02) possibly_damaging(0.809) TCGA-77-8139-01 2 153494180 153494180 G A FMNL2 Missense_Mutation p.A980T 0.09 possibly_damaging(0.682) TCGA-77-8139-01 2 163360966 163360966 T C KCNH7 Missense_Mutation p.E372G 0.16 deleterious(0.01) benign(0.178) TCGA-77-8139-01 2 167760352 167760352 G T XIRP2 Silent p.V120V 0.14 TCGA-77-8139-01 2 168108360 168108360 G T XIRP2 Missense_Mutation p.E3486D 0.12 probably_damaging(0.914) TCGA-77-8139-01 2 170026292 170026292 G C LRP2 Missense_Mutation p.T3806R 0.26 benign(0.222) TCGA-77-8139-01 2 176965421 176965421 G T HOXD12 Missense_Mutation p.W249L 0.31 deleterious(0) probably_damaging(0.999) TCGA-77-8139-01 2 179571324 179571324 C T TTN Silent p.R9759R 0.24 TCGA-77-8139-01 2 179732781 179732781 A T CCDC141 Missense_Mutation p.V849D 0.11 deleterious(0.01) possibly_damaging(0.894) TCGA-77-8139-01 2 179732782 179732782 C T CCDC141 Missense_Mutation p.V849I 0.11 deleterious(0) possibly_damaging(0.557) TCGA-77-8139-01 2 212288953 212288953 A T ERBB4 Missense_Mutation p.D931E 0.22 tolerated(0.1) benign(0.007) TCGA-77-8139-01 2 217724753 217724753 G C TNP1 Missense_Mutation p.S2W 0.20 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-77-8139-01 2 223084952 223084952 C T PAX3 Silent p.R360R 0.13 TCGA-77-8139-01 2 224463290 224463290 A G SCG2 Silent p.N237N 0.24 TCGA-77-8139-01 2 228881926 228881926 C T SPHKAP Missense_Mutation p.S1215N 0.24 tolerated(0.72) benign(0.012) TCGA-77-8139-01 2 233244514 233244514 C T ALPP Silent p.H175H 0.08 TCGA-77-8139-01 2 234839382 234839382 G A TRPM8 Missense_Mutation p.A63T 0.34 tolerated(0.2) benign(0.036) TCGA-77-8139-01 2 239975273 239975273 C A HDAC4 Missense_Mutation p.R1033L 0.44 deleterious(0.01) benign(0.013) TCGA-77-8139-01 2 241666325 241666325 C G KIF1A Missense_Mutation p.S1347T 0.35 deleterious(0.02) benign(0.004) TCGA-77-8139-01 2 26950667 26950667 T C KCNK3 Missense_Mutation p.L139P 0.16 deleterious(0) probably_damaging(0.999) TCGA-77-8139-01 2 32733280 32733280 G A BIRC6 Missense_Mutation p.V3312I 0.16 possibly_damaging(0.526) TCGA-77-8139-01 2 88327844 88327844 G C KRCC1 Missense_Mutation p.T80R 0.07 deleterious(0.04) benign(0.01) TCGA-77-8139-01 2 90229420 90229420 C A IGKV1D-42 Silent p.V80V 0.26 TCGA-77-8139-01 3 121400561 121400561 G T GOLGB1 Missense_Mutation p.S2949Y 0.20 possibly_damaging(0.681) TCGA-77-8139-01 3 132358494 132358494 T C ACAD11 Missense_Mutation p.T182A 0.15 tolerated(0.07) possibly_damaging(0.902) TCGA-77-8139-01 3 139195325 139195325 G T RBP2 5'UTR 0.13 TCGA-77-8139-01 3 147108803 147108803 C - ZIC4 Frame_Shift_Del p.V357Cfs*26 0.10 TCGA-77-8139-01 3 147108822 147108822 C A ZIC4 Silent p.S350S 0.09 TCGA-77-8139-01 3 148596252 148596252 A C CPA3 Missense_Mutation p.E98D 0.05 tolerated(0.2) benign(0.086) TCGA-77-8139-01 3 186954032 186954032 G C MASP1 Missense_Mutation p.P543A 0.10 deleterious(0.04) probably_damaging(0.953) TCGA-77-8139-01 3 190165586 190165586 C A TMEM207 Missense_Mutation p.D36Y 0.09 deleterious(0.01) benign(0.047) TCGA-77-8139-01 3 42916549 42916549 A T CYP8B1 Missense_Mutation p.W254R 0.29 deleterious(0) probably_damaging(1) TCGA-77-8139-01 3 49691018 49691018 T G BSN Silent p.T1343T 0.11 TCGA-77-8139-01 3 51387795 51387795 A G DOCK3 Missense_Mutation p.Y1360C 0.25 deleterious(0) probably_damaging(0.999) TCGA-77-8139-01 3 62358223 62358223 G A FEZF2 Silent p.G107G 0.50 TCGA-77-8139-01 3 93733545 93733545 T G STX19 Missense_Mutation p.K190T 0.19 deleterious(0) possibly_damaging(0.791) TCGA-77-8139-01 3 98072860 98072860 C A OR5K4 Missense_Mutation p.L55I 0.22 deleterious(0) probably_damaging(0.956) TCGA-77-8139-01 3 98251831 98251831 C A GPR15 Nonsense_Mutation p.C318* 0.17 TCGA-77-8139-01 4 106859525 106859525 C G NPNT Missense_Mutation p.C181W 0.21 deleterious(0) probably_damaging(1) TCGA-77-8139-01 4 107846979 107846979 C A DKK2 Missense_Mutation p.C117F 0.20 deleterious(0) probably_damaging(0.996) TCGA-77-8139-01 4 109805341 109805341 C G COL25A1 Missense_Mutation p.G338A 0.10 deleterious(0.01) probably_damaging(1) TCGA-77-8139-01 4 110745628 110745628 A T GAR1 3'UTR 0.11 TCGA-77-8139-01 4 114279509 114279509 C T ANK2 Silent p.P3245P 0.20 TCGA-77-8139-01 4 123868542 123868542 G A SPATA5 Missense_Mutation p.R538Q 0.04 tolerated(0.06) benign(0.006) TCGA-77-8139-01 4 134072318 134072318 C T PCDH10 Silent p.H341H 0.14 TCGA-77-8139-01 4 156784666 156784666 G T ASIC5 Missense_Mutation p.T94K 0.21 deleterious(0) probably_damaging(0.988) TCGA-77-8139-01 4 4440222 4440222 G C STX18 Missense_Mutation p.P171R 0.11 deleterious(0.01) benign(0.091) TCGA-77-8139-01 4 493184 493184 C G PIGG Missense_Mutation p.I20M 0.10 deleterious(0) possibly_damaging(0.592) TCGA-77-8139-01 4 69817053 69817053 G A UGT2A3 Silent p.N142N 0.13 TCGA-77-8139-01 4 85600193 85600193 C G WDFY3 Missense_Mutation p.E3342D 0.11 tolerated(0.17) probably_damaging(0.98) TCGA-77-8139-01 4 88303404 88303404 C G HSD17B11 Intron 0.16 TCGA-77-8139-01 5 11199607 11199607 C A CTNND2 Missense_Mutation p.R643M 0.30 deleterious(0) probably_damaging(0.997) TCGA-77-8139-01 5 134785507 134785507 C T TIFAB Silent p.G41G 0.33 TCGA-77-8139-01 5 140559109 140559109 C A PCDHB8 Missense_Mutation p.H498Q 0.08 tolerated_low_confidence(0.62) benign(0.031) TCGA-77-8139-01 5 140772855 140772855 G T PCDHGA8 Missense_Mutation p.D159Y 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-77-8139-01 5 141353238 141353250 GAGTCTGTCCAAG - RNF14 Frame_Shift_Del p.E29Vfs*18 0.18 TCGA-77-8139-01 5 158590031 158590031 G - RNF145 Frame_Shift_Del p.P423Lfs*7 0.13 TCGA-77-8139-01 5 176710890 176710890 A C NSD1 Missense_Mutation p.T2038P 0.16 deleterious(0.01) possibly_damaging(0.892) TCGA-77-8139-01 5 176710894 176710894 G T NSD1 Missense_Mutation p.R2039L 0.16 deleterious(0) probably_damaging(0.956) TCGA-77-8139-01 5 178373479 178373479 C G ZNF454 Silent p.V51V 0.16 TCGA-77-8139-01 5 35709060 35709060 A G SPEF2 Silent p.K892K 0.19 TCGA-77-8139-01 5 40853280 40853280 G T CARD6 Missense_Mutation p.G616W 0.14 deleterious(0) probably_damaging(0.983) TCGA-77-8139-01 5 41199880 41199880 G T C6 Silent p.R145R 0.06 TCGA-77-8139-01 5 43291188 43291188 C A HMGCS1 3'UTR 0.17 TCGA-77-8139-01 5 5242192 5242192 T A ADAMTS16 Silent p.G850G 0.17 TCGA-77-8139-01 5 77590312 77590312 G A AP3B1 Missense_Mutation p.S31L 0.08 deleterious(0.01) benign(0.005) TCGA-77-8139-01 5 89930930 89930930 G T GPR98 Splice_Site p.X614_splice 0.30 TCGA-77-8139-01 6 116943994 116943994 C T RSPH4A Silent p.D250D 0.04 TCGA-77-8139-01 6 119669854 119669854 T C MAN1A1 Missense_Mutation p.E126G 0.10 tolerated(0.34) benign(0.146) TCGA-77-8139-01 6 136599693 136599693 C A BCLAF1 Missense_Mutation p.R109L 0.11 deleterious_low_confidence(0.01) unknown(0) TCGA-77-8139-01 6 144837480 144837480 A G UTRN Missense_Mutation p.K1787R 0.10 tolerated(0.41) benign(0.005) TCGA-77-8139-01 6 159185587 159185587 T A SYTL3 Missense_Mutation p.V595D 0.15 deleterious(0) probably_damaging(0.944) TCGA-77-8139-01 6 161530813 161530813 C T MAP3K4 Silent p.Y1421Y 0.11 TCGA-77-8139-01 6 169629714 169629714 C T THBS2 Missense_Mutation p.D738N 0.16 deleterious(0.04) benign(0.398) TCGA-77-8139-01 6 25669756 25669756 C T SCGN Silent p.D118D 0.20 TCGA-77-8139-01 6 26017954 26017954 C T HIST1H1A Missense_Mutation p.E3K 0.13 deleterious(0) unknown(0) TCGA-77-8139-01 6 28327660 28327660 G T ZKSCAN3 Silent p.P99P 0.31 TCGA-77-8139-01 6 29640917 29640917 G T ZFP57 Missense_Mutation p.A324E 0.13 tolerated(0.06) probably_damaging(0.964) TCGA-77-8139-01 6 401728 401728 G T IRF4 Silent p.L350L 0.26 TCGA-77-8139-01 6 44279864 44279864 T C AARS2 Missense_Mutation p.H127R 0.26 deleterious(0) probably_damaging(1) TCGA-77-8139-01 6 55216309 55216309 G A GFRAL Missense_Mutation p.C210Y 0.26 deleterious(0) probably_damaging(1) TCGA-77-8139-01 6 70064167 70064167 C A BAI3 Missense_Mutation p.P1168T 0.14 deleterious(0.01) benign(0.104) TCGA-77-8139-01 7 102105160 102105160 C A ALKBH4 Splice_Site p.X41_splice 0.21 TCGA-77-8139-01 7 102105161 102105161 C A ALKBH4 Silent p.A41A 0.21 TCGA-77-8139-01 7 103207077 103207077 G T RELN Missense_Mutation p.T1573K 0.26 deleterious(0) probably_damaging(0.996) TCGA-77-8139-01 7 104751266 104751266 C T KMT2E Missense_Mutation p.S1340F 0.08 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-77-8139-01 7 131887442 131887442 C G PLXNA4 Missense_Mutation p.G850A 0.07 tolerated(0.62) benign(0.003) TCGA-77-8139-01 7 154863299 154863299 C T HTR5A Silent p.R230R 0.31 TCGA-77-8139-01 7 37907475 37907475 G A NME8 Missense_Mutation p.G265R 0.17 tolerated(0.5) benign(0.004) TCGA-77-8139-01 7 38794344 38794344 C T VPS41 Silent p.K582K 0.10 TCGA-77-8139-01 7 48520726 48520726 T G ABCA13 Missense_Mutation p.L4357V 0.22 possibly_damaging(0.539) TCGA-77-8139-01 7 50513181 50513181 G A FIGNL1 Missense_Mutation p.A602V 0.13 deleterious(0) benign(0.002) TCGA-77-8139-01 7 5103771 5103771 A G RBAK Missense_Mutation p.I228M 0.22 tolerated(0.7) benign(0.002) TCGA-77-8139-01 7 72848966 72848966 C T FZD9 Missense_Mutation p.S210L 0.21 deleterious(0.03) benign(0.041) TCGA-77-8139-01 7 87762108 87762108 G T ADAM22 Intron 0.30 TCGA-77-8139-01 8 113529436 113529436 C T CSMD3 Missense_Mutation p.C1528Y 0.07 deleterious(0) probably_damaging(1) TCGA-77-8139-01 8 145234416 145234416 G A MROH1 Missense_Mutation p.R76H 0.19 tolerated(1) benign(0.001) TCGA-77-8139-01 8 145637864 145637864 G T SLC39A4 3'UTR 0.05 TCGA-77-8139-01 8 145756097 145756097 G T ARHGAP39 Missense_Mutation p.R1047S 0.15 deleterious(0.03) possibly_damaging(0.735) TCGA-77-8139-01 8 39091432 39091432 G T ADAM32 Missense_Mutation p.G550V 0.29 deleterious(0) probably_damaging(0.998) TCGA-77-8139-01 8 42611595 42611595 G C CHRNA6 Missense_Mutation p.I249M 0.33 deleterious(0) possibly_damaging(0.523) TCGA-77-8139-01 8 68087491 68087491 C T CSPP1 Intron 0.11 TCGA-77-8139-01 8 70517098 70517098 C T SULF1 Silent p.P436P 0.17 TCGA-77-8139-01 8 73480172 73480172 A G KCNB2 Missense_Mutation p.N68S 0.16 tolerated(0.08) benign(0.348) TCGA-77-8139-01 8 77767622 77767622 A G ZFHX4 Missense_Mutation p.E2822G 0.18 benign(0.098) TCGA-77-8139-01 8 88885627 88885627 G C DCAF4L2 Silent p.S191S 0.20 TCGA-77-8139-01 9 107581125 107581125 G A ABCA1 Missense_Mutation p.A1094V 0.15 deleterious(0) probably_damaging(1) TCGA-77-8139-01 9 116764311 116764311 A T ZNF618 Nonsense_Mutation p.K125* 0.12 TCGA-77-8139-01 9 118950363 118950363 T C PAPPA Missense_Mutation p.V449A 0.25 tolerated(0.49) benign(0) TCGA-77-8139-01 9 119460685 119460685 G A TRIM32 Missense_Mutation p.E222K 0.26 deleterious(0.02) possibly_damaging(0.452) TCGA-77-8139-01 9 131584648 131584648 T C ENDOG Missense_Mutation p.I218T 0.20 deleterious(0) probably_damaging(0.999) TCGA-77-8139-01 9 138703099 138703099 C G CAMSAP1 3'UTR 0.50 TCGA-77-8139-01 9 139390561 139390561 G A NOTCH1 Nonsense_Mutation p.Q2544* 0.43 TCGA-77-8139-01 9 140218242 140218242 C A EXD3 Missense_Mutation p.A707S 0.16 deleterious(0) probably_damaging(0.975) TCGA-77-8139-01 9 18504880 18504880 G A ADAMTSL1 Nonsense_Mutation p.W39* 0.23 TCGA-77-8139-01 9 32632906 32632906 G T TAF1L Missense_Mutation p.T891K 0.12 deleterious(0) probably_damaging(0.944) TCGA-77-8139-01 9 74846066 74846066 G A GDA Silent p.L319L 0.26 TCGA-77-8139-01 X 100241818 100241818 C A ARL13A Silent p.L138L 0.19 TCGA-77-8139-01 X 111090568 111090568 G A TRPC5 Missense_Mutation p.R492C 0.48 deleterious(0) probably_damaging(0.996) TCGA-77-8139-01 X 125686436 125686436 C T DCAF12L1 Silent p.A52A 0.47 TCGA-77-8139-01 X 133527967 133527967 G T PHF6 Missense_Mutation p.A135S 0.30 tolerated(0.88) benign(0.004) TCGA-77-8139-01 X 153032920 153032920 C G PLXNB3 Missense_Mutation p.P236R 0.44 deleterious(0.03) possibly_damaging(0.894) TCGA-77-8139-01 X 27765841 27765841 G A DCAF8L2 Missense_Mutation p.A277T 0.44 tolerated(0.07) possibly_damaging(0.721) TCGA-77-8139-01 X 48117204 48117204 C G SSX1 Nonsense_Mutation p.Y31* 0.56 TCGA-77-8139-01 X 72667408 72667408 G T CDX4 Missense_Mutation p.A107S 0.47 tolerated(0.86) benign(0.058) TCGA-77-8139-01 X 73960076 73960076 T C KIAA2022 Missense_Mutation p.N1439S 0.49 tolerated(0.12) benign(0.053) TCGA-77-8140-01 10 108412268 108412268 C A SORCS1 Nonsense_Mutation p.E783* 0.42 TCGA-77-8140-01 10 108412269 108412269 C A SORCS1 Missense_Mutation p.R782S 0.44 tolerated(0.4) benign(0.036) TCGA-77-8140-01 10 115405648 115405648 G C NRAP Missense_Mutation p.S349W 0.31 deleterious(0.01) probably_damaging(0.974) TCGA-77-8140-01 10 118355745 118355745 C T PNLIPRP1 Missense_Mutation p.P162L 0.30 tolerated(0.21) benign(0.181) TCGA-77-8140-01 10 43612162 43612162 C G RET Missense_Mutation p.A756G 0.35 deleterious(0) probably_damaging(0.999) TCGA-77-8140-01 10 70332487 70332487 C G TET1 Missense_Mutation p.S131C 0.39 tolerated(0.13) benign(0.033) TCGA-77-8140-01 10 70548037 70548037 G T CCAR1 Missense_Mutation p.V1047L 0.08 tolerated(0.1) unknown(0) TCGA-77-8140-01 10 7239536 7239536 C A SFMBT2 Missense_Mutation p.G558C 0.35 deleterious(0) probably_damaging(1) TCGA-77-8140-01 10 7239537 7239537 C A SFMBT2 Silent p.P557P 0.35 TCGA-77-8140-01 10 75552304 75552304 A G ZSWIM8 Silent p.E669E 0.48 TCGA-77-8140-01 10 94452272 94452272 T A HHEX Missense_Mutation p.L170Q 0.52 deleterious(0) probably_damaging(0.997) TCGA-77-8140-01 10 98995011 98995011 T A ARHGAP19 Missense_Mutation p.K416M 0.38 deleterious(0) probably_damaging(0.927) TCGA-77-8140-01 11 103114453 103114453 C T DYNC2H1 Missense_Mutation p.S3291F 0.10 probably_damaging(0.997) TCGA-77-8140-01 11 113140806 113140806 C A NCAM1 Intron 0.23 TCGA-77-8140-01 11 116701350 116701350 G T APOC3 Missense_Mutation p.A18S 0.24 deleterious(0.01) unknown(0) TCGA-77-8140-01 11 119004975 119004975 G A HINFP Missense_Mutation p.E441K 0.16 tolerated(0.72) benign(0.055) TCGA-77-8140-01 11 120916512 120916512 C A TBCEL Missense_Mutation p.P38H 0.21 deleterious(0.02) probably_damaging(0.961) TCGA-77-8140-01 11 123810724 123810724 T A OR4D5 Missense_Mutation p.L134H 0.31 deleterious(0.01) possibly_damaging(0.594) TCGA-77-8140-01 11 15994409 15994409 G A SOX6 Silent p.P791P 0.35 TCGA-77-8140-01 11 4510586 4510586 C T OR52K1 Silent p.A152A 0.30 TCGA-77-8140-01 11 50003227 50003227 C A OR4C12 Missense_Mutation p.V271L 0.27 deleterious_low_confidence(0.04) benign(0.058) TCGA-77-8140-01 11 5462480 5462480 A C OR51I1 Missense_Mutation p.F89V 0.31 deleterious(0.02) probably_damaging(0.996) TCGA-77-8140-01 11 55607152 55607152 A T OR5D16 Missense_Mutation p.T309S 0.33 tolerated(0.67) benign(0.004) TCGA-77-8140-01 11 55655614 55655614 G T TRIM51 Missense_Mutation p.G205V 0.24 tolerated(0.09) possibly_damaging(0.558) TCGA-77-8140-01 11 5566146 5566146 T C OR52H1 Missense_Mutation p.N203S 0.40 deleterious(0.04) probably_damaging(0.999) TCGA-77-8140-01 11 55798595 55798595 G A OR5AS1 Missense_Mutation p.R234K 0.28 tolerated(0.08) benign(0.083) TCGA-77-8140-01 11 55944834 55944834 T C OR5J2 Silent p.A247A 0.29 TCGA-77-8140-01 11 56950086 56950086 C A LRRC55 Missense_Mutation p.P240H 0.23 deleterious(0) probably_damaging(0.999) TCGA-77-8140-01 11 57886005 57886005 G C OR9I1 Silent p.V304V 0.20 TCGA-77-8140-01 11 5878201 5878201 G T OR52E8 Missense_Mutation p.N244K 0.37 deleterious(0.02) benign(0.098) TCGA-77-8140-01 11 58979678 58979678 G T MPEG1 Missense_Mutation p.L221I 0.17 tolerated(1) benign(0.003) TCGA-77-8140-01 11 59596955 59596955 C A GIF 3'UTR 0.29 TCGA-77-8140-01 11 59837120 59837120 G C MS4A3 Missense_Mutation p.C196S 0.27 tolerated(0.06) benign(0.124) TCGA-77-8140-01 11 60274296 60274298 CAC - MS4A12 In_Frame_Del p.T231del 0.27 TCGA-77-8140-01 11 62038502 62038502 C A SCGB2A2 Missense_Mutation p.Q69K 0.21 deleterious(0.01) benign(0.117) TCGA-77-8140-01 11 62434258 62434258 C T METTL12 Missense_Mutation p.S153F 0.18 deleterious(0.03) possibly_damaging(0.694) TCGA-77-8140-01 11 63411735 63411735 T C ATL3 Splice_Site p.X207_splice 0.33 TCGA-77-8140-01 11 66083757 66083757 C A CD248 Nonsense_Mutation p.E248* 0.14 TCGA-77-8140-01 11 66083758 66083758 C G CD248 Silent p.V247V 0.14 TCGA-77-8140-01 11 67888312 67888312 G C CHKA Missense_Mutation p.F111L 0.13 tolerated(0.45) benign(0.012) TCGA-77-8140-01 11 67934495 67934495 G A SUV420H1 Silent p.V376V 0.30 TCGA-77-8140-01 11 74717514 74717514 C T NEU3 Missense_Mutation p.P455S 0.20 tolerated(0.25) benign(0.001) TCGA-77-8140-01 11 78369497 78369497 C T TENM4 Missense_Mutation p.R2639Q 0.16 deleterious(0.02) benign(0.136) TCGA-77-8140-01 11 78369498 78369498 G T TENM4 Silent p.R2639R 0.16 TCGA-77-8140-01 11 7960190 7960190 C T OR10A3 Missense_Mutation p.R293Q 0.20 deleterious(0) benign(0.087) TCGA-77-8140-01 11 92577277 92577277 G A FAT3 Missense_Mutation p.D3582N 0.29 probably_damaging(1) TCGA-77-8140-01 12 100433482 100433482 C T UHRF1BP1L Silent p.L1389L 0.17 TCGA-77-8140-01 12 100612275 100612275 C T ACTR6 Missense_Mutation p.P278L 0.20 deleterious(0) possibly_damaging(0.672) TCGA-77-8140-01 12 103306607 103306607 C T PAH Missense_Mutation p.E44K 0.24 tolerated(0.43) benign(0.005) TCGA-77-8140-01 12 109723209 109723209 C A FOXN4 Silent p.L267L 0.21 TCGA-77-8140-01 12 109907432 109907432 C A KCTD10 Missense_Mutation p.K35N 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-77-8140-01 12 112498985 112498985 C A NAA25 Missense_Mutation p.G453W 0.21 deleterious(0) probably_damaging(1) TCGA-77-8140-01 12 123200062 123200062 C T HCAR3 3'UTR 0.15 TCGA-77-8140-01 12 124285889 124285889 G A DNAH10 Missense_Mutation p.D724N 0.36 benign(0.005) TCGA-77-8140-01 12 12874110 12874110 A G CDKN1B 3'UTR 0.27 TCGA-77-8140-01 12 130926610 130926610 T A RIMBP2 Silent p.L412L 0.36 TCGA-77-8140-01 12 15803822 15803822 C A EPS8 Missense_Mutation p.A457S 0.24 tolerated(0.09) benign(0.007) TCGA-77-8140-01 12 21350050 21350050 G A SLCO1B1 Missense_Mutation p.E300K 0.38 tolerated(1) benign(0.001) TCGA-77-8140-01 12 22040759 22040759 C G ABCC9 Splice_Site p.X637_splice 0.26 TCGA-77-8140-01 12 22401999 22401999 A T ST8SIA1 Silent p.T175T 0.21 TCGA-77-8140-01 12 29689182 29689182 G A TMTC1 Missense_Mutation p.A582V 0.25 deleterious(0.01) benign(0.425) TCGA-77-8140-01 12 31944606 31944606 A G H3F3C 3'UTR 0.24 TCGA-77-8140-01 12 32481304 32481304 C T BICD1 Silent p.L639L 0.21 TCGA-77-8140-01 12 4700353 4700353 G A DYRK4 Missense_Mutation p.A3T 0.30 tolerated_low_confidence(0.11) benign(0.011) TCGA-77-8140-01 12 52827962 52827962 C G KRT75 Missense_Mutation p.G43R 0.26 tolerated(0.22) possibly_damaging(0.671) TCGA-77-8140-01 12 53187904 53187904 A T KRT3 Missense_Mutation p.F286Y 0.24 tolerated(0.42) possibly_damaging(0.649) TCGA-77-8140-01 12 53400162 53400162 C G EIF4B 5'UTR 0.30 TCGA-77-8140-01 12 53400252 53400252 C G EIF4B 5'UTR 0.26 TCGA-77-8140-01 12 53400260 53400260 C T EIF4B 5'UTR 0.24 TCGA-77-8140-01 12 55863874 55863874 C A OR6C70 Missense_Mutation p.D17Y 0.14 deleterious_low_confidence(0) benign(0.043) TCGA-77-8140-01 12 60098683 60098683 A G SLC16A7 Missense_Mutation p.Y34C 0.21 tolerated(0.08) probably_damaging(0.998) TCGA-77-8140-01 12 8211415 8211415 G T C3AR1 Missense_Mutation p.A456E 0.29 deleterious(0.01) possibly_damaging(0.827) TCGA-77-8140-01 12 82750790 82750790 T C CCDC59 Missense_Mutation p.Q138R 0.30 tolerated(0.52) benign(0.01) TCGA-77-8140-01 12 86377424 86377424 C G MGAT4C Missense_Mutation p.E58Q 0.18 tolerated(0.21) benign(0.156) TCGA-77-8140-01 13 114309150 114309150 G C ATP4B Missense_Mutation p.Q74E 0.40 deleterious(0) probably_damaging(0.998) TCGA-77-8140-01 13 32863854 32863854 G T FRY Missense_Mutation p.V2852L 0.30 tolerated(0.46) benign(0.285) TCGA-77-8140-01 13 43930079 43930079 C A ENOX1 Missense_Mutation p.A267S 0.38 tolerated(1) benign(0.017) TCGA-77-8140-01 14 20389238 20389238 G T OR4K5 Missense_Mutation p.S158I 0.20 tolerated(0.11) possibly_damaging(0.708) TCGA-77-8140-01 14 20444001 20444001 C T OR4K15 Silent p.D108D 0.23 TCGA-77-8140-01 14 20692570 20692570 A G OR11H6 Silent p.G234G 0.21 TCGA-77-8140-01 14 23447642 23447642 T C AJUBA Missense_Mutation p.K340R 0.33 tolerated(0.08) possibly_damaging(0.628) TCGA-77-8140-01 14 47351321 47351321 G T MDGA2 Missense_Mutation p.A781D 0.40 deleterious(0.01) benign(0.386) TCGA-77-8140-01 14 51221577 51221577 G T NIN Missense_Mutation p.S1516Y 0.21 deleterious(0) probably_damaging(0.957) TCGA-77-8140-01 15 22866796 22866796 A T TUBGCP5 Missense_Mutation p.Y803F 0.42 deleterious(0.05) possibly_damaging(0.855) TCGA-77-8140-01 15 23021303 23021303 T C NIPA2 Missense_Mutation p.I12V 0.39 tolerated(0.3) benign(0.035) TCGA-77-8140-01 15 33603253 33603253 G A RYR3 Missense_Mutation p.E3K 0.12 benign(0.012) TCGA-77-8140-01 15 33941330 33941330 G A RYR3 Missense_Mutation p.G1346R 0.26 probably_damaging(1) TCGA-77-8140-01 15 54914587 54914587 G T UNC13C Nonsense_Mutation p.G2057* 0.26 TCGA-77-8140-01 15 54914588 54914588 G T UNC13C Missense_Mutation p.G2057V 0.25 deleterious_low_confidence(0) possibly_damaging(0.717) TCGA-77-8140-01 15 58458899 58458899 G T AQP9 Missense_Mutation p.A47S 0.27 tolerated(0.17) benign(0.07) TCGA-77-8140-01 15 65743387 65743387 T C DPP8 Missense_Mutation p.S842G 0.28 deleterious(0.04) probably_damaging(0.994) TCGA-77-8140-01 15 69329388 69329388 G C NOX5 Silent p.L403L 0.20 TCGA-77-8140-01 15 84659872 84659872 C T ADAMTSL3 Silent p.I1293I 0.24 TCGA-77-8140-01 15 86205620 86205620 A T AKAP13 Missense_Mutation p.M1583L 0.24 tolerated(1) benign(0.001) TCGA-77-8140-01 15 88522507 88522507 A T NTRK3 Intron 0.44 TCGA-77-8140-01 15 99460028 99460028 G A IGF1R Silent p.E708E 0.20 TCGA-77-8140-01 15 99478162 99478162 G A IGF1R Silent p.V1022V 0.19 TCGA-77-8140-01 16 15847321 15847321 C T MYH11 Silent p.P605P 0.44 TCGA-77-8140-01 16 1716567 1716567 C G CRAMP1L Missense_Mutation p.T1001S 0.34 tolerated(0.38) benign(0.004) TCGA-77-8140-01 16 2239036 2239036 G C CASKIN1 Missense_Mutation p.D203E 0.36 possibly_damaging(0.874) TCGA-77-8140-01 16 2815550 2815550 C T SRRM2 Missense_Mutation p.S1674L 0.36 unknown(0) TCGA-77-8140-01 16 29675835 29675835 G C SPN Silent p.V262V 0.54 TCGA-77-8140-01 16 31504979 31504979 C G C16orf58 Missense_Mutation p.Q301H 0.36 tolerated(0.12) benign(0.014) TCGA-77-8140-01 16 5121835 5121835 C G ALG1 5'UTR 0.47 TCGA-77-8140-01 16 5121836 5121836 T G ALG1 5'UTR 0.47 TCGA-77-8140-01 16 58620529 58620529 G A CNOT1 Missense_Mutation p.S186F 0.07 deleterious(0.05) possibly_damaging(0.793) TCGA-77-8140-01 16 61747816 61747816 C A CDH8 Missense_Mutation p.G528V 0.26 deleterious(0) probably_damaging(0.993) TCGA-77-8140-01 16 67694931 67694931 C G PARD6A 5'UTR 0.41 TCGA-77-8140-01 16 70841696 70841696 G T HYDIN Silent p.T5051T 0.26 TCGA-77-8140-01 16 72137536 72137536 G A DHX38 Missense_Mutation p.G558E 0.20 deleterious(0) probably_damaging(1) TCGA-77-8140-01 16 72832539 72832539 G A ZFHX3 Missense_Mutation p.P1348S 0.24 benign(0.01) TCGA-77-8140-01 16 74670400 74670400 A - RFWD3 Frame_Shift_Del p.C424Afs*36 0.20 TCGA-77-8140-01 16 75263548 75263548 C A BCAR1 Missense_Mutation p.G871V 0.25 tolerated(0.25) probably_damaging(0.999) TCGA-77-8140-01 16 80718799 80718799 C G CDYL2 Silent p.P84P 0.17 TCGA-77-8140-01 16 81194422 81194422 G T PKD1L2 RNA 0.26 TCGA-77-8140-01 16 83159065 83159065 C G CDH13 Missense_Mutation p.P195A 0.28 tolerated(0.08) benign(0.153) TCGA-77-8140-01 17 11790189 11790189 G A DNAH9 Silent p.E3673E 0.31 TCGA-77-8140-01 17 2996085 2996085 G T OR1D2 Missense_Mutation p.T69N 0.30 deleterious(0.02) benign(0.035) TCGA-77-8140-01 17 37564540 37564540 G A MED1 Missense_Mutation p.H1312Y 0.28 deleterious_low_confidence(0.04) unknown(0) TCGA-77-8140-01 17 42992632 42992632 C A GFAP Nonsense_Mutation p.E75* 0.27 TCGA-77-8140-01 17 51900394 51900394 C T KIF2B 5'UTR 0.25 TCGA-77-8140-01 17 62230391 62230391 G C TEX2 Missense_Mutation p.N1025K 0.19 deleterious(0) possibly_damaging(0.737) TCGA-77-8140-01 17 73240754 73240754 G A GGA3 Silent p.N82N 0.31 TCGA-77-8140-01 17 7577570 7577570 C T TP53 Missense_Mutation p.M237I 0.31 deleterious(0) probably_damaging(0.997) TCGA-77-8140-01 17 7627002 7627002 G C DNAH2 Missense_Mutation p.D75H 0.31 possibly_damaging(0.607) TCGA-77-8140-01 17 7699887 7699887 G T DNAH2 Missense_Mutation p.D2594Y 0.43 possibly_damaging(0.781) TCGA-77-8140-01 17 79615069 79615069 G T TSPAN10 Missense_Mutation p.Q271H 0.19 deleterious(0.04) benign(0.07) TCGA-77-8140-01 18 13825970 13825970 C T MC5R Missense_Mutation p.S69F 0.30 deleterious(0.01) benign(0.287) TCGA-77-8140-01 18 50976877 50976877 A T DCC Silent p.P1079P 0.32 TCGA-77-8140-01 18 74561504 74561504 G C ZNF236 Silent p.A24A 0.33 TCGA-77-8140-01 19 11591442 11591442 C T ELAVL3 5'UTR 0.21 TCGA-77-8140-01 19 14765892 14765892 G T EMR3 Missense_Mutation p.T160K 0.12 tolerated(0.95) benign(0.003) TCGA-77-8140-01 19 15580728 15580728 G A PGLYRP2 Silent p.G452G 0.27 TCGA-77-8140-01 19 16025182 16025182 G C CYP4F11 Missense_Mutation p.R444G 0.23 deleterious(0) probably_damaging(0.99) TCGA-77-8140-01 19 17758219 17758219 G T UNC13A Silent p.I633I 0.45 TCGA-77-8140-01 19 19349100 19349100 G T NCAN Missense_Mutation p.G1097C 0.28 deleterious(0) probably_damaging(0.999) TCGA-77-8140-01 19 35793553 35793553 G T MAG Missense_Mutation p.W391C 0.30 tolerated(0.07) probably_damaging(0.933) TCGA-77-8140-01 19 36224038 36224038 G T KMT2B Missense_Mutation p.K2196N 0.33 probably_damaging(0.95) TCGA-77-8140-01 19 38160399 38160399 G C ZNF781 Silent p.L217L 0.23 TCGA-77-8140-01 19 40376680 40376680 G A FCGBP Silent p.C3914C 0.14 TCGA-77-8140-01 19 41081377 41081377 G A SPTBN4 Missense_Mutation p.A2533T 0.31 tolerated(0.11) possibly_damaging(0.499) TCGA-77-8140-01 19 42526422 42526422 C T GRIK5 Missense_Mutation p.G520R 0.18 deleterious(0) probably_damaging(0.953) TCGA-77-8140-01 19 45872223 45872223 T C ERCC2 Missense_Mutation p.I71V 0.05 tolerated(0.42) benign(0.007) TCGA-77-8140-01 19 47844764 47844764 A T C5AR2 Silent p.T236T 0.25 TCGA-77-8140-01 19 50979580 50979580 C A FAM71E1 Missense_Mutation p.R22S 0.14 tolerated_low_confidence(0.18) benign(0) TCGA-77-8140-01 19 51960765 51960765 A T SIGLEC8 Nonsense_Mutation p.L228* 0.31 TCGA-77-8140-01 19 52569329 52569329 A G ZNF841 Silent p.C602C 0.27 TCGA-77-8140-01 19 54754804 54754804 G T LILRB5 Intron 0.25 TCGA-77-8140-01 19 56953705 56953705 C G ZNF667 Missense_Mutation p.R220T 0.45 deleterious(0) benign(0.023) TCGA-77-8140-01 19 58290396 58290396 A G ZNF586 Silent p.Q147Q 0.37 TCGA-77-8140-01 19 58371297 58371297 C G ZNF587 Missense_Mutation p.A506G 0.14 tolerated(0.58) benign(0.062) TCGA-77-8140-01 19 6682173 6682173 C G C3 Missense_Mutation p.D1414H 0.30 deleterious(0) probably_damaging(0.999) TCGA-77-8140-01 19 6693497 6693497 C G C3 Silent p.G1052G 0.25 TCGA-77-8140-01 19 9082384 9082384 C T MUC16 Nonsense_Mutation p.W3144* 0.26 TCGA-77-8140-01 1 102296238 102296238 T A OLFM3 Missense_Mutation p.K121M 0.26 deleterious(0) possibly_damaging(0.905) TCGA-77-8140-01 1 10363405 10363405 G T KIF1B Intron 0.45 TCGA-77-8140-01 1 109816115 109816115 T C CELSR2 Missense_Mutation p.L2856P 0.16 tolerated_low_confidence(0.18) benign(0.092) TCGA-77-8140-01 1 145578448 145578448 C T PIAS3 Silent p.V137V 0.12 TCGA-77-8140-01 1 150048373 150048373 G A VPS45 Missense_Mutation p.V118I 0.26 deleterious(0.03) possibly_damaging(0.752) TCGA-77-8140-01 1 155264127 155264127 C - PKLR Frame_Shift_Del p.D339Tfs*2 0.18 TCGA-77-8140-01 1 155291528 155291528 C G RUSC1 5'UTR 0.28 TCGA-77-8140-01 1 155638531 155638531 C G YY1AP1 Missense_Mutation p.E394Q 0.21 deleterious(0.03) possibly_damaging(0.779) TCGA-77-8140-01 1 157548558 157548558 A - FCRL4 Splice_Site p.X454_splice 0.14 TCGA-77-8140-01 1 158651405 158651405 A T SPTA1 Missense_Mutation p.L148Q 0.30 tolerated(0.75) benign(0.002) TCGA-77-8140-01 1 160783577 160783577 T A LY9 Missense_Mutation p.N202K 0.31 tolerated(0.15) possibly_damaging(0.474) TCGA-77-8140-01 1 161494936 161494936 C G HSPA6 Missense_Mutation p.A163G 0.21 deleterious_low_confidence(0) possibly_damaging(0.643) TCGA-77-8140-01 1 167839608 167839608 C T ADCY10 Silent p.K501K 0.23 TCGA-77-8140-01 1 168250427 168250427 A T TBX19 Missense_Mutation p.K33N 0.28 deleterious(0) possibly_damaging(0.884) TCGA-77-8140-01 1 169511183 169511183 G A F5 Missense_Mutation p.H1049Y 0.08 tolerated_low_confidence(0.1) benign(0.005) TCGA-77-8140-01 1 17603056 17603056 C A PADI3 Silent p.L450L 0.19 TCGA-77-8140-01 1 178483208 178483208 C A TEX35 Missense_Mutation p.T29N 0.33 deleterious_low_confidence(0.01) probably_damaging(0.978) TCGA-77-8140-01 1 197072981 197072981 T C ASPM Silent p.Q1800Q 0.24 TCGA-77-8140-01 1 200877924 200877924 A - C1orf106 Frame_Shift_Del p.T215Pfs*105 0.20 TCGA-77-8140-01 1 215848203 215848203 T C USH2A Silent p.T4350T 0.31 TCGA-77-8140-01 1 216348612 216348612 C G USH2A Missense_Mutation p.V1537L 0.28 benign(0.003) TCGA-77-8140-01 1 22166503 22166503 G A HSPG2 Missense_Mutation p.S3174L 0.22 benign(0.217) TCGA-77-8140-01 1 22168042 22168042 G A HSPG2 Silent p.L3106L 0.17 TCGA-77-8140-01 1 22169386 22169386 G C HSPG2 Missense_Mutation p.I2929M 0.23 probably_damaging(0.987) TCGA-77-8140-01 1 227618216 227618216 C T CTD-2090I13.1 RNA 0.26 TCGA-77-8140-01 1 227920145 227920145 T C JMJD4 Missense_Mutation p.K447R 0.24 tolerated(0.12) benign(0.003) TCGA-77-8140-01 1 228594185 228594185 C G TRIM11 Silent p.P26P 0.35 TCGA-77-8140-01 1 228596014 228596014 T G TRIM17 Missense_Mutation p.H441P 0.19 deleterious(0.04) possibly_damaging(0.873) TCGA-77-8140-01 1 230798933 230798933 G A COG2 Missense_Mutation p.R116Q 0.19 tolerated(0.39) benign(0.015) TCGA-77-8140-01 1 2333698 2333698 G T RER1 Missense_Mutation p.A140S 0.43 deleterious(0.02) possibly_damaging(0.715) TCGA-77-8140-01 1 238090738 238090738 C A RP11-193H5.1 RNA 0.19 TCGA-77-8140-01 1 240370643 240370643 C G FMN2 Missense_Mutation p.S844C 0.26 unknown(0) TCGA-77-8140-01 1 241094062 241094062 A T RGS7 Missense_Mutation p.Y114N 0.28 deleterious(0) probably_damaging(0.994) TCGA-77-8140-01 1 242023881 242023881 C A EXO1 Missense_Mutation p.N273K 0.25 tolerated(0.61) benign(0) TCGA-77-8140-01 1 247694873 247694873 G A OR2C3 Missense_Mutation p.A314V 0.27 tolerated(0.1) benign(0.001) TCGA-77-8140-01 1 248084474 248084474 G T OR2T8 Missense_Mutation p.R52L 0.12 deleterious(0.01) benign(0.166) TCGA-77-8140-01 1 248309311 248309311 C T OR2M5 Missense_Mutation p.L288F 0.20 deleterious(0.02) benign(0.216) TCGA-77-8140-01 1 248458726 248458726 C A OR2T12 Missense_Mutation p.R52L 0.20 deleterious(0.01) benign(0.142) TCGA-77-8140-01 1 248685532 248685532 C T OR2G6 Silent p.N195N 0.25 TCGA-77-8140-01 1 29041150 29041150 C T GMEB1 Silent p.D529D 0.27 TCGA-77-8140-01 1 3410667 3410667 C A MEGF6 Missense_Mutation p.G1384V 0.19 deleterious(0) probably_damaging(0.997) TCGA-77-8140-01 1 3754079 3754079 C T CEP104 Missense_Mutation p.R299Q 0.06 tolerated(0.35) benign(0.022) TCGA-77-8140-01 1 3765326 3765326 C G CEP104 Missense_Mutation p.E45Q 0.21 deleterious(0.02) probably_damaging(0.986) TCGA-77-8140-01 1 40226173 40226173 G A BMP8B Missense_Mutation p.S376F 0.05 deleterious(0.02) probably_damaging(0.999) TCGA-77-8140-01 1 41976616 41976616 G - HIVEP3 Frame_Shift_Del p.R2243Afs*239 0.25 TCGA-77-8140-01 1 55340835 55340835 G T DHCR24 Silent p.G181G 0.28 TCGA-77-8140-01 1 92470858 92470858 T G BRDT Splice_Site p.X925_splice 0.30 TCGA-77-8140-01 1 948899 948899 C A ISG15 5'UTR 0.26 TCGA-77-8140-01 20 1286259 1286259 C A SNPH Missense_Mutation p.P349Q 0.15 tolerated(0.11) benign(0.012) TCGA-77-8140-01 20 13052947 13052947 G C SPTLC3 Missense_Mutation p.R116T 0.31 deleterious(0) probably_damaging(0.999) TCGA-77-8140-01 20 1616019 1616019 C G SIRPG Silent p.V325V 0.25 TCGA-77-8140-01 20 17639487 17639487 G C RRBP1 Intron 0.09 TCGA-77-8140-01 20 20177224 20177224 A T C20orf26 Missense_Mutation p.Y534F 0.23 tolerated(0.06) possibly_damaging(0.664) TCGA-77-8140-01 20 23856838 23856838 C G CST5 Missense_Mutation p.C139S 0.10 deleterious(0) probably_damaging(0.996) TCGA-77-8140-01 20 31600709 31600709 T A BPIFB2 Missense_Mutation p.F102I 0.21 tolerated(0.25) possibly_damaging(0.876) TCGA-77-8140-01 20 31877720 31877720 A T BPIFB1 Missense_Mutation p.Q96L 0.27 deleterious(0) probably_damaging(0.957) TCGA-77-8140-01 20 34041833 34041833 C T GDF5 Intron 0.43 TCGA-77-8140-01 20 43938331 43938331 C T RBPJL Missense_Mutation p.R86W 0.12 deleterious(0) probably_damaging(1) TCGA-77-8140-01 20 44575946 44575946 C T PCIF1 Silent p.F584F 0.27 TCGA-77-8140-01 20 45242417 45242417 G T SLC13A3 Intron 0.29 TCGA-77-8140-01 20 45607214 45607214 G - EYA2 Intron 0.20 TCGA-77-8140-01 20 58519945 58519945 A T FAM217B Missense_Mutation p.K316M 0.16 deleterious(0) possibly_damaging(0.885) TCGA-77-8140-01 20 5903296 5903296 A G CHGB Missense_Mutation p.E169G 0.05 tolerated(0.19) benign(0.269) TCGA-77-8140-01 20 60574071 60574071 G C TAF4 Missense_Mutation p.Q961E 0.26 possibly_damaging(0.479) TCGA-77-8140-01 20 60883492 60883492 G A ADRM1 Silent p.L361L 0.28 TCGA-77-8140-01 20 60883775 60883775 G A ADRM1 Silent p.T394T 0.14 TCGA-77-8140-01 21 17183500 17183500 G C USP25 Missense_Mutation p.G301A 0.29 deleterious(0) probably_damaging(0.939) TCGA-77-8140-01 21 35107479 35107479 C T ITSN1 Missense_Mutation p.P106S 0.23 deleterious(0) unknown(0) TCGA-77-8140-01 21 43411858 43411858 T G ZBTB21 Missense_Mutation p.T783P 0.22 deleterious(0) probably_damaging(0.994) TCGA-77-8140-01 21 47666565 47666565 G A MCM3AP Missense_Mutation p.A1509V 0.26 tolerated(0.13) benign(0.001) TCGA-77-8140-01 22 21330568 21330568 G A AIFM3 Missense_Mutation p.S291N 0.19 tolerated(0.55) benign(0.004) TCGA-77-8140-01 22 24583538 24583538 G - SUSD2 Splice_Site p.X631_splice 0.36 TCGA-77-8140-01 22 30857450 30857450 C T SEC14L3 Missense_Mutation p.D310N 0.29 tolerated(0.05) possibly_damaging(0.849) TCGA-77-8140-01 22 31501222 31501222 A G SELM Missense_Mutation p.L84P 0.20 deleterious(0) probably_damaging(1) TCGA-77-8140-01 22 39441518 39441518 C G APOBEC3F Missense_Mutation p.F179L 0.22 tolerated(1) benign(0.174) TCGA-77-8140-01 22 40820326 40820326 C T MKL1 Missense_Mutation p.D121N 0.16 deleterious(0) probably_damaging(0.981) TCGA-77-8140-01 2 107052587 107052587 G A RGPD3 Nonsense_Mutation p.Q584* 0.22 TCGA-77-8140-01 2 118586920 118586920 A G DDX18 Missense_Mutation p.Y583C 0.23 deleterious(0) probably_damaging(0.951) TCGA-77-8140-01 2 128261083 128261083 C - IWS1 Frame_Shift_Del p.G430Afs*7 0.24 TCGA-77-8140-01 2 138169275 138169275 A G THSD7B Missense_Mutation p.Y931C 0.21 tolerated(0.16) possibly_damaging(0.878) TCGA-77-8140-01 2 141259381 141259381 G T LRP1B Missense_Mutation p.L2909I 0.30 possibly_damaging(0.694) TCGA-77-8140-01 2 152467357 152467357 A T NEB Missense_Mutation p.D3943E 0.32 benign(0.048) TCGA-77-8140-01 2 160663647 160663647 C T LY75-CD302 Silent p.Q1609Q 0.22 TCGA-77-8140-01 2 165561481 165561481 A G COBLL1 Silent p.D377D 0.25 TCGA-77-8140-01 2 166908495 166908495 A T SCN1A Missense_Mutation p.L233Q 0.22 deleterious(0) probably_damaging(1) TCGA-77-8140-01 2 168105285 168105285 G A XIRP2 Silent p.K2461K 0.21 TCGA-77-8140-01 2 168108139 168108139 A T XIRP2 Missense_Mutation p.R3413W 0.19 probably_damaging(0.988) TCGA-77-8140-01 2 17699534 17699534 C A RAD51AP2 Missense_Mutation p.R50L 0.19 deleterious(0.04) probably_damaging(0.923) TCGA-77-8140-01 2 179433893 179433893 G T TTN Missense_Mutation p.H25656N 0.18 TCGA-77-8140-01 2 179433894 179433894 G T TTN Nonsense_Mutation p.C25655* 0.18 TCGA-77-8140-01 2 179463648 179463648 C G TTN Missense_Mutation p.R18930T 0.17 TCGA-77-8140-01 2 179579958 179579958 A T TTN Missense_Mutation p.I8652K 0.29 TCGA-77-8140-01 2 179628994 179628994 C T TTN Missense_Mutation p.V3342I 0.26 TCGA-77-8140-01 2 179638258 179638258 C A TTN Missense_Mutation p.A2509S 0.25 TCGA-77-8140-01 2 202082549 202082549 C G CASP10 3'UTR 0.26 TCGA-77-8140-01 2 204305158 204305158 G C RAPH1 Missense_Mutation p.P919A 0.08 unknown(0) TCGA-77-8140-01 2 209308151 209308151 C G PTH2R Silent p.V196V 0.21 TCGA-77-8140-01 2 218762643 218762643 C A TNS1 Missense_Mutation p.V16L 0.34 tolerated(0.09) possibly_damaging(0.542) TCGA-77-8140-01 2 232393458 232393458 G T NMUR1 Missense_Mutation p.R92S 0.27 deleterious(0.01) benign(0.373) TCGA-77-8140-01 2 234070386 234070386 G A INPP5D Missense_Mutation p.C373Y 0.10 deleterious(0) probably_damaging(1) TCGA-77-8140-01 2 238253585 238253585 G A COL6A3 Silent p.Y2391Y 0.26 TCGA-77-8140-01 2 32692797 32692797 G T BIRC6 Missense_Mutation p.R1854I 0.12 probably_damaging(0.991) TCGA-77-8140-01 2 39492412 39492412 C T MAP4K3 Missense_Mutation p.G690R 0.21 deleterious(0) probably_damaging(1) TCGA-77-8140-01 2 48906655 48906655 T G STON1-GTF2A1L 3'UTR 0.31 TCGA-77-8140-01 2 54114540 54114540 G A PSME4 Missense_Mutation p.H1529Y 0.25 tolerated(0.06) benign(0.032) TCGA-77-8140-01 2 69703042 69703042 C A AAK1 Missense_Mutation p.A949S 0.11 deleterious(0) probably_damaging(0.978) TCGA-77-8140-01 2 77745709 77745709 C A LRRTM4 Missense_Mutation p.S429I 0.17 deleterious(0) probably_damaging(0.997) TCGA-77-8140-01 2 89513178 89513178 G T IGKV1-27 Silent p.T27T 0.11 TCGA-77-8140-01 2 90078102 90078102 C A IGKV3D-20 Missense_Mutation p.Q47K 0.23 deleterious(0.02) possibly_damaging(0.696) TCGA-77-8140-01 2 90198995 90198995 C A IGKV1D-12 Missense_Mutation p.S52R 0.24 tolerated(0.07) benign(0.039) TCGA-77-8140-01 3 110852931 110852931 C A PVRL3 Missense_Mutation p.P507T 0.24 deleterious(0.02) benign(0.284) TCGA-77-8140-01 3 111797622 111797622 A T TMPRSS7 Missense_Mutation p.E627V 0.23 deleterious(0) probably_damaging(0.931) TCGA-77-8140-01 3 111927094 111927094 G C SLC9C1 Missense_Mutation p.I639M 0.15 deleterious(0.02) benign(0.091) TCGA-77-8140-01 3 113378921 113378921 A G KIAA2018 Silent p.A536A 0.17 TCGA-77-8140-01 3 114026952 114026952 T A TIGIT Missense_Mutation p.C237S 0.20 tolerated(0.2) benign(0.001) TCGA-77-8140-01 3 122145950 122145950 A G KPNA1 Missense_Mutation p.I500T 0.08 deleterious(0) possibly_damaging(0.653) TCGA-77-8140-01 3 130285781 130285781 C G COL6A6 Missense_Mutation p.I506M 0.40 deleterious(0.02) probably_damaging(0.933) TCGA-77-8140-01 3 131101121 131101121 G C NUDT16 Missense_Mutation p.E124Q 0.16 deleterious(0) probably_damaging(0.986) TCGA-77-8140-01 3 131102055 131102055 G C NUDT16 3'UTR 0.16 TCGA-77-8140-01 3 135745754 135745754 C T PPP2R3A Silent p.S692S 0.24 TCGA-77-8140-01 3 138174045 138174045 C A ESYT3 Missense_Mutation p.Q127K 0.18 deleterious(0) benign(0.176) TCGA-77-8140-01 3 141535780 141535780 G T GRK7 Missense_Mutation p.W517L 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-77-8140-01 3 142212054 142212054 C A ATR Missense_Mutation p.G2000C 0.15 deleterious(0.01) probably_damaging(0.98) TCGA-77-8140-01 3 148558534 148558534 A G CPB1 Missense_Mutation p.T112A 0.34 tolerated(0.24) benign(0) TCGA-77-8140-01 3 153839774 153839774 G T ARHGEF26 5'UTR 0.27 TCGA-77-8140-01 3 153847502 153847502 C T ARHGEF26 Silent p.L421L 0.14 TCGA-77-8140-01 3 155571704 155571704 C - SLC33A1 Frame_Shift_Del p.G28Vfs*35 0.28 TCGA-77-8140-01 3 170819347 170819347 C T TNIK Missense_Mutation p.D828N 0.21 deleterious(0.03) possibly_damaging(0.776) TCGA-77-8140-01 3 186272116 186272116 G C TBCCD1 Missense_Mutation p.Q491E 0.04 tolerated(0.3) benign(0.008) TCGA-77-8140-01 3 194062792 194062792 C T CPN2 Missense_Mutation p.G214S 0.09 tolerated(0.89) benign(0.006) TCGA-77-8140-01 3 21706378 21706378 C G ZNF385D Silent p.A55A 0.28 TCGA-77-8140-01 3 21706381 21706381 A T ZNF385D Missense_Mutation p.N54K 0.28 deleterious(0) benign(0.109) TCGA-77-8140-01 3 98001817 98001817 A T OR5H2 Missense_Mutation p.K29I 0.40 deleterious(0) possibly_damaging(0.853) TCGA-77-8140-01 3 98519597 98519597 A G DCBLD2 Intron 0.44 TCGA-77-8140-01 4 10492154 10492154 G C CLNK Silent p.V408V 0.12 TCGA-77-8140-01 4 10669505 10669505 C A CLNK 5'UTR 0.31 TCGA-77-8140-01 4 109748300 109748300 A G COL25A1 Silent p.Y585Y 0.21 TCGA-77-8140-01 4 128811297 128811298 - AT PLK4 Frame_Shift_Ins p.W580Yfs*9 0.17 TCGA-77-8140-01 4 141847217 141847217 G T RNF150 Missense_Mutation p.H301N 0.15 deleterious(0) probably_damaging(0.995) TCGA-77-8140-01 4 155508048 155508048 C A FGA Missense_Mutation p.R178L 0.31 deleterious(0) possibly_damaging(0.729) TCGA-77-8140-01 4 175898784 175898784 C G ADAM29 Missense_Mutation p.P703R 0.24 tolerated(0.51) benign(0.001) TCGA-77-8140-01 4 30724214 30724214 C G PCDH7 Silent p.R390R 0.24 TCGA-77-8140-01 4 4199389 4199389 G C OTOP1 Missense_Mutation p.S391W 0.24 deleterious(0) probably_damaging(0.972) TCGA-77-8140-01 4 44624465 44624465 A G YIPF7 Missense_Mutation p.L270P 0.18 deleterious(0) probably_damaging(0.988) TCGA-77-8140-01 4 48172310 48172310 C T TEC Missense_Mutation p.E137K 0.08 tolerated(0.89) possibly_damaging(0.612) TCGA-77-8140-01 4 49030749 49030749 C G CWH43 Missense_Mutation p.T457R 0.28 deleterious(0) probably_damaging(0.997) TCGA-77-8140-01 4 649759 649759 C T PDE6B Silent p.A341A 0.25 TCGA-77-8140-01 4 876505 876505 C T GAK Missense_Mutation p.V503I 0.32 tolerated(0.35) benign(0.032) TCGA-77-8140-01 4 91229541 91229541 A T CCSER1 Missense_Mutation p.S36C 0.17 deleterious(0.02) possibly_damaging(0.823) TCGA-77-8140-01 5 114878782 114878782 C G FEM1C Missense_Mutation p.E137Q 0.47 tolerated(0.14) probably_damaging(0.962) TCGA-77-8140-01 5 118865647 118865647 C T HSD17B4 Missense_Mutation p.S634F 0.34 deleterious(0.01) possibly_damaging(0.48) TCGA-77-8140-01 5 121726836 121726836 G A SNCAIP Missense_Mutation p.A3T 0.48 tolerated(0.08) probably_damaging(0.995) TCGA-77-8140-01 5 130695060 130695060 C G CDC42SE2 5'UTR 0.20 TCGA-77-8140-01 5 135692737 135692737 G C TRPC7 Silent p.A113A 0.43 TCGA-77-8140-01 5 137288347 137288347 C G FAM13B Missense_Mutation p.E612Q 0.39 deleterious(0) possibly_damaging(0.653) TCGA-77-8140-01 5 140559564 140559564 A T PCDHB8 Missense_Mutation p.E650V 0.48 deleterious_low_confidence(0.01) benign(0.442) TCGA-77-8140-01 5 1406396 1406396 C - SLC6A3 Frame_Shift_Del p.Q503Sfs*9 0.32 TCGA-77-8140-01 5 14291120 14291120 G T TRIO Missense_Mutation p.G279V 0.46 probably_damaging(0.997) TCGA-77-8140-01 5 156022016 156022016 G C SGCD Missense_Mutation p.D153H 0.24 deleterious(0.02) possibly_damaging(0.876) TCGA-77-8140-01 5 33881554 33881554 G T ADAMTS12 Missense_Mutation p.H53Q 0.40 tolerated(0.26) benign(0.112) TCGA-77-8140-01 5 34998918 34998918 G T AGXT2 Missense_Mutation p.A484E 0.25 tolerated(0.06) benign(0.012) TCGA-77-8140-01 5 35759780 35759780 G T SPEF2 Missense_Mutation p.L1193F 0.42 deleterious(0) probably_damaging(0.997) TCGA-77-8140-01 5 36049436 36049436 G C UGT3A2 Missense_Mutation p.S133C 0.09 tolerated(0.17) benign(0.248) TCGA-77-8140-01 5 41313801 41313801 G T PLCXD3 Missense_Mutation p.A295D 0.18 deleterious(0.02) possibly_damaging(0.852) TCGA-77-8140-01 5 42719316 42719316 A G GHR Silent p.T569T 0.39 TCGA-77-8140-01 5 43656171 43656171 G A NNT Silent p.L763L 0.10 TCGA-77-8140-01 5 75597258 75597258 G T SV2C Missense_Mutation p.G630C 0.41 tolerated(0.07) probably_damaging(0.998) TCGA-77-8140-01 5 94244991 94244991 G T MCTP1 Missense_Mutation p.D539E 0.39 tolerated(0.08) probably_damaging(0.999) TCGA-77-8140-01 5 95728915 95728915 T A PCSK1 Silent p.S684S 0.42 TCGA-77-8140-01 6 100838904 100838904 G T SIM1 Nonsense_Mutation p.S545* 0.21 TCGA-77-8140-01 6 105405995 105405995 G C LIN28B Missense_Mutation p.G11A 0.29 tolerated(0.35) unknown(0) TCGA-77-8140-01 6 112021383 112021383 A T FYN Missense_Mutation p.D262E 0.12 deleterious(0.02) probably_damaging(0.985) TCGA-77-8140-01 6 117593668 117593668 C G VGLL2 3'UTR 0.28 TCGA-77-8140-01 6 119345553 119345553 T A FAM184A Missense_Mutation p.R195S 0.23 deleterious(0.02) benign(0.096) TCGA-77-8140-01 6 12120798 12120798 C A HIVEP1 Missense_Mutation p.S257Y 0.25 tolerated(1) benign(0.001) TCGA-77-8140-01 6 131276311 131276311 C A EPB41L2 Missense_Mutation p.K213N 0.26 tolerated(0.06) probably_damaging(0.983) TCGA-77-8140-01 6 13978026 13978026 C G RNF182 Missense_Mutation p.L226V 0.08 tolerated(0.66) benign(0.057) TCGA-77-8140-01 6 146276056 146276056 C T SHPRH Missense_Mutation p.E135K 0.28 tolerated_low_confidence(0.2) benign(0.003) TCGA-77-8140-01 6 154763225 154763225 T C CNKSR3 Missense_Mutation p.D139G 0.18 deleterious(0) probably_damaging(0.981) TCGA-77-8140-01 6 161139374 161139374 C A PLG Missense_Mutation p.T279K 0.17 tolerated(1) benign(0) TCGA-77-8140-01 6 25862079 25862079 G T SLC17A3 Missense_Mutation p.T161N 0.21 deleterious(0) benign(0.167) TCGA-77-8140-01 6 26056582 26056582 G C HIST1H1C Silent p.A25A 0.26 TCGA-77-8140-01 6 29627319 29627319 T - MOG Frame_Shift_Del p.I105Lfs*6 0.33 TCGA-77-8140-01 6 30630694 30630694 C A DHX16 Silent p.G474G 0.44 TCGA-77-8140-01 6 31939262 31939262 G A DXO Missense_Mutation p.A64V 0.31 tolerated(0.14) benign(0.249) TCGA-77-8140-01 6 36168112 36168112 C T BRPF3 Missense_Mutation p.R5C 0.43 deleterious(0) possibly_damaging(0.891) TCGA-77-8140-01 6 38885091 38885091 G T DNAH8 Missense_Mutation p.C3189F 0.30 probably_damaging(0.992) TCGA-77-8140-01 6 73751778 73751778 T C KCNQ5 Silent p.C203C 0.32 TCGA-77-8140-01 6 74078951 74078951 A G OOEP Silent p.F116F 0.24 TCGA-77-8140-01 6 89888585 89888585 C T GABRR1 Missense_Mutation p.M448I 0.23 tolerated(0.93) benign(0.004) TCGA-77-8140-01 6 93955024 93955024 C A EPHA7 Missense_Mutation p.M958I 0.23 tolerated(0.16) probably_damaging(0.985) TCGA-77-8140-01 6 96990853 96990853 G T UFL1 Missense_Mutation p.D455Y 0.23 deleterious(0.01) possibly_damaging(0.823) TCGA-77-8140-01 7 100551256 100551256 T A MUC3A Missense_Mutation p.S3T 0.25 deleterious_low_confidence(0) unknown(0) TCGA-77-8140-01 7 100731940 100731940 C G TRIM56 Silent p.P449P 0.32 TCGA-77-8140-01 7 102079431 102079431 G A ORAI2 Missense_Mutation p.D10N 0.23 tolerated_low_confidence(0.72) benign(0.027) TCGA-77-8140-01 7 122131447 122131447 T C CADPS2 Missense_Mutation p.S524G 0.35 deleterious(0.01) possibly_damaging(0.707) TCGA-77-8140-01 7 127223310 127223310 C G GCC1 Missense_Mutation p.R362S 0.22 deleterious(0) probably_damaging(0.998) TCGA-77-8140-01 7 129921972 129921972 C A CPA2 Missense_Mutation p.S339Y 0.26 deleterious(0) possibly_damaging(0.838) TCGA-77-8140-01 7 131853323 131853323 G T PLXNA4 Silent p.G1342G 0.18 TCGA-77-8140-01 7 131859672 131859672 G - PLXNA4 Frame_Shift_Del p.E1295Sfs*9 0.20 TCGA-77-8140-01 7 135368905 135368905 G T SLC13A4 Silent p.V570V 0.18 TCGA-77-8140-01 7 136700364 136700364 G T CHRM2 Missense_Mutation p.S251I 0.18 tolerated(0.08) benign(0.197) TCGA-77-8140-01 7 142564667 142564667 G C EPHB6 Missense_Mutation p.D531H 0.27 tolerated(0.1) probably_damaging(0.998) TCGA-77-8140-01 7 142638392 142638392 G A KEL Missense_Mutation p.R716C 0.24 tolerated(0.15) benign(0.007) TCGA-77-8140-01 7 143633019 143633019 G A OR2F2 Missense_Mutation p.E232K 0.23 tolerated(0.06) benign(0.259) TCGA-77-8140-01 7 143747507 143747507 C T OR2A5 Nonsense_Mutation p.Q5* 0.31 TCGA-77-8140-01 7 150840832 150840832 G T AGAP3 Silent p.V846V 0.22 TCGA-77-8140-01 7 151904483 151904483 G A KMT2C Missense_Mutation p.S1248L 0.26 possibly_damaging(0.632) TCGA-77-8140-01 7 22533424 22533424 T A STEAP1B Missense_Mutation p.K39I 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.489) TCGA-77-8140-01 7 36662796 36662796 T G AOAH Silent p.P194P 0.32 TCGA-77-8140-01 7 37951877 37951877 T C SFRP4 Missense_Mutation p.N212S 0.28 tolerated(0.09) possibly_damaging(0.455) TCGA-77-8140-01 7 45005329 45005329 C A MYO1G Missense_Mutation p.R763M 0.40 deleterious(0) possibly_damaging(0.653) TCGA-77-8140-01 7 89790150 89790150 A T STEAP1 Missense_Mutation p.K39I 0.09 deleterious_low_confidence(0.03) benign(0.202) TCGA-77-8140-01 7 98460759 98460759 C T TMEM130 Missense_Mutation p.C117Y 0.25 deleterious(0) probably_damaging(1) TCGA-77-8140-01 7 98563441 98563441 G A TRRAP Missense_Mutation p.D2360N 0.27 benign(0.21) TCGA-77-8140-01 7 99258266 99258266 C T CYP3A5 Silent p.E294E 0.25 TCGA-77-8140-01 8 100128051 100128051 G A VPS13B Missense_Mutation p.E296K 0.09 tolerated(0.16) benign(0.305) TCGA-77-8140-01 8 101253351 101253351 A T SPAG1 3'UTR 0.41 TCGA-77-8140-01 8 101270896 101270896 T C RNF19A Missense_Mutation p.N802S 0.41 tolerated_low_confidence(0.74) benign(0) TCGA-77-8140-01 8 105393410 105393410 A G DPYS Splice_Site 0.23 TCGA-77-8140-01 8 110510733 110510733 G C PKHD1L1 Missense_Mutation p.D3548H 0.11 deleterious(0) probably_damaging(0.997) TCGA-77-8140-01 8 113599442 113599442 C T CSMD3 Silent p.T1246T 0.48 TCGA-77-8140-01 8 125989685 125989685 G A ZNF572 Missense_Mutation p.S392N 0.37 deleterious(0.04) benign(0.081) TCGA-77-8140-01 8 145731496 145731496 C G GPT Missense_Mutation p.S313C 0.22 deleterious(0) probably_damaging(0.99) TCGA-77-8140-01 8 17043860 17043860 C T ZDHHC2 Missense_Mutation p.H60Y 0.47 deleterious(0) probably_damaging(0.996) TCGA-77-8140-01 8 19701721 19701721 A G INTS10 Silent p.Q618Q 0.21 TCGA-77-8140-01 8 37698647 37698647 C A GPR124 Missense_Mutation p.P931T 0.13 deleterious(0) probably_damaging(1) TCGA-77-8140-01 8 39564379 39564379 G T ADAM18 Missense_Mutation p.G658V 0.16 tolerated(0.07) possibly_damaging(0.856) TCGA-77-8140-01 8 39782880 39782880 T A IDO1 Silent p.T282T 0.12 TCGA-77-8140-01 8 41906413 41906413 G A KAT6A Missense_Mutation p.S28L 0.10 probably_damaging(0.995) TCGA-77-8140-01 8 41906589 41906589 G A KAT6A 5'UTR 0.10 TCGA-77-8140-01 8 42207554 42207554 C A POLB Silent p.I97I 0.09 TCGA-77-8140-01 8 48771539 48771539 C A PRKDC Silent p.R2071R 0.16 TCGA-77-8140-01 8 52258470 52258470 T C PXDNL Silent p.Q1313Q 0.36 TCGA-77-8140-01 8 61767013 61767013 G T CHD7 Missense_Mutation p.M2289I 0.15 benign(0.006) TCGA-77-8140-01 8 69728131 69728133 TCT - C8orf34 In_Frame_Del p.L523del 0.10 TCGA-77-8140-01 8 76476342 76476342 A G HNF4G 3'UTR 0.50 TCGA-77-8140-01 8 77690538 77690538 T A ZFHX4 Missense_Mutation p.V1063E 0.19 possibly_damaging(0.607) TCGA-77-8140-01 8 77776242 77776242 C A ZFHX4 Missense_Mutation p.P3431H 0.11 benign(0.142) TCGA-77-8140-01 8 80915247 80915247 C T MRPS28 Missense_Mutation p.E128K 0.12 tolerated(0.41) possibly_damaging(0.61) TCGA-77-8140-01 8 87241940 87241940 A T SLC7A13 Missense_Mutation p.N189K 0.17 deleterious(0) possibly_damaging(0.457) TCGA-77-8140-01 8 87544779 87544779 G C CPNE3 Missense_Mutation p.E144Q 0.05 tolerated(0.67) probably_damaging(0.971) TCGA-77-8140-01 9 1056949 1056949 G C DMRT2 Missense_Mutation p.K454N 0.36 deleterious_low_confidence(0.02) probably_damaging(0.931) TCGA-77-8140-01 9 105767022 105767022 T C CYLC2 Missense_Mutation p.W76R 0.32 deleterious(0) probably_damaging(1) TCGA-77-8140-01 9 113170912 113170912 C A SVEP1 Missense_Mutation p.C2323F 0.11 probably_damaging(1) TCGA-77-8140-01 9 116859581 116859581 C A KIF12 Missense_Mutation p.G78C 0.22 deleterious(0) probably_damaging(1) TCGA-77-8140-01 9 119943402 119943402 C A ASTN2 Intron 0.38 TCGA-77-8140-01 9 120466728 120466728 G A TLR4 5'UTR 0.48 TCGA-77-8140-01 9 130830684 130830684 C T SLC25A25 Missense_Mutation p.P29L 0.45 deleterious_low_confidence(0.02) benign(0.002) TCGA-77-8140-01 9 21384941 21384941 C G IFNA2 Missense_Mutation p.E130Q 0.06 deleterious(0.05) benign(0.306) TCGA-77-8140-01 9 21968234 21968234 G - CDKN2A 3'UTR 0.22 TCGA-77-8140-01 9 32631485 32631485 G A TAF1L Missense_Mutation p.P1365S 0.13 deleterious(0) possibly_damaging(0.78) TCGA-77-8140-01 X 100243199 100243199 G A ARL13A Missense_Mutation p.G224E 0.33 tolerated(0.17) benign(0.01) TCGA-77-8140-01 X 100653378 100653378 G T GLA Missense_Mutation p.Q327K 0.23 deleterious(0) probably_damaging(1) TCGA-77-8140-01 X 102529489 102529489 C A TCEAL5 Translation_Start_Site p.M1? 0.16 deleterious(0) probably_damaging(0.998) TCGA-77-8140-01 X 106117004 106117004 A G TBC1D8B Missense_Mutation p.T1058A 0.29 tolerated(0.44) benign(0.001) TCGA-77-8140-01 X 106144737 106144737 G C RIPPLY1 Missense_Mutation p.T88S 0.19 tolerated(0.79) benign(0.376) TCGA-77-8140-01 X 107976507 107976507 G T IRS4 Nonsense_Mutation p.S1023* 0.23 TCGA-77-8140-01 X 107979606 107979606 G T IRS4 5'UTR 0.28 TCGA-77-8140-01 X 109695838 109695838 G T RGAG1 Missense_Mutation p.G665W 0.27 deleterious(0) probably_damaging(0.999) TCGA-77-8140-01 X 110966050 110966050 G C ALG13 Missense_Mutation p.A489P 0.12 deleterious(0) possibly_damaging(0.897) TCGA-77-8140-01 X 117960301 117960301 A G ZCCHC12 Missense_Mutation p.D365G 0.26 deleterious_low_confidence(0.02) benign(0.03) TCGA-77-8140-01 X 123554331 123554331 C A TENM1 Silent p.P1604P 0.26 TCGA-77-8140-01 X 125686140 125686140 C A DCAF12L1 Missense_Mutation p.G151V 0.23 deleterious(0) probably_damaging(0.992) TCGA-77-8140-01 X 127185967 127185967 G - ACTRT1 Frame_Shift_Del p.I74Lfs*6 0.23 TCGA-77-8140-01 X 128782613 128782613 A G APLN Missense_Mutation p.M75T 0.19 deleterious_low_confidence(0) possibly_damaging(0.888) TCGA-77-8140-01 X 12904432 12904432 C G TLR7 Missense_Mutation p.P269A 0.18 deleterious(0) probably_damaging(0.933) TCGA-77-8140-01 X 134856739 134856739 T A CT45A1 Missense_Mutation p.C172S 0.03 deleterious(0) benign(0.075) TCGA-77-8140-01 X 135430348 135430348 C A GPR112 Missense_Mutation p.P1495T 0.16 tolerated(0.17) benign(0.003) TCGA-77-8140-01 X 13618206 13618206 G C EGFL6 Silent p.T131T 0.27 TCGA-77-8140-01 X 13769421 13769421 G T OFD1 Missense_Mutation p.R330I 0.32 deleterious(0) probably_damaging(0.943) TCGA-77-8140-01 X 137793220 137793220 C A FGF13 Intron 0.18 TCGA-77-8140-01 X 142803884 142803884 G T SPANXN2 5'UTR 0.30 TCGA-77-8140-01 X 144904564 144904564 G A SLITRK2 Silent p.G207G 0.26 TCGA-77-8140-01 X 146318480 146318480 C G MIR508 RNA 0.13 TCGA-77-8140-01 X 147030296 147030296 C A FMR1 Missense_Mutation p.R611S 0.30 deleterious_low_confidence(0) possibly_damaging(0.717) TCGA-77-8140-01 X 149102090 149102090 C A CXorf40B Translation_Start_Site p.M1? 0.24 deleterious(0.04) benign(0.006) TCGA-77-8140-01 X 151092738 151092738 G T MAGEA4 Missense_Mutation p.G201V 0.24 deleterious(0) probably_damaging(0.999) TCGA-77-8140-01 X 153663837 153663837 C G ATP6AP1 Missense_Mutation p.L397V 0.29 deleterious(0.03) benign(0.211) TCGA-77-8140-01 X 154464638 154464638 C A VBP1 Silent p.T171T 0.26 TCGA-77-8140-01 X 17394301 17394301 G T NHS Missense_Mutation p.D141Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-77-8140-01 X 23018531 23018531 C A DDX53 Nonsense_Mutation p.Y119* 0.34 TCGA-77-8140-01 X 24859804 24859804 C A POLA1 Missense_Mutation p.H1252N 0.15 tolerated(0.35) benign(0.006) TCGA-77-8140-01 X 29973599 29973599 C A IL1RAPL1 Missense_Mutation p.Q585K 0.18 deleterious(0.04) probably_damaging(0.93) TCGA-77-8140-01 X 31089605 31089605 G T FTHL17 Missense_Mutation p.L156M 0.22 deleterious(0.01) probably_damaging(0.975) TCGA-77-8140-01 X 31089606 31089606 G T FTHL17 Missense_Mutation p.N155K 0.21 deleterious(0.03) benign(0.303) TCGA-77-8140-01 X 32466676 32466676 G T DMD Missense_Mutation p.A1228D 0.31 benign(0.109) TCGA-77-8140-01 X 32663257 32663257 G T DMD Missense_Mutation p.P325T 0.29 probably_damaging(0.954) TCGA-77-8140-01 X 34962508 34962508 C A FAM47B Silent p.V520V 0.17 TCGA-77-8140-01 X 34962895 34962895 C A FAM47B 3'UTR 0.25 TCGA-77-8140-01 X 35971706 35971706 C A CXorf22 Intron 0.23 TCGA-77-8140-01 X 37028827 37028827 C A FAM47C Silent p.R782R 0.26 TCGA-77-8140-01 X 37028954 37028954 T A FAM47C Missense_Mutation p.L824Q 0.27 deleterious(0.05) possibly_damaging(0.729) TCGA-77-8140-01 X 41413129 41413129 C G CASK Missense_Mutation p.D628H 0.25 deleterious(0) probably_damaging(1) TCGA-77-8140-01 X 46940637 46940637 G T RGN Missense_Mutation p.V32L 0.26 deleterious(0) possibly_damaging(0.791) TCGA-77-8140-01 X 48978823 48978823 C T GPKOW Silent p.T127T 0.15 TCGA-77-8140-01 X 49076170 49076170 C A CACNA1F Silent p.L833L 0.20 TCGA-77-8140-01 X 53563386 53563386 T G HUWE1 Missense_Mutation p.Y4127S 0.26 unknown(0) TCGA-77-8140-01 X 53563387 53563387 A T HUWE1 Missense_Mutation p.Y4127N 0.26 unknown(0) TCGA-77-8140-01 X 53574675 53574675 G T HUWE1 Missense_Mutation p.T3532N 0.28 unknown(0) TCGA-77-8140-01 X 55033858 55033858 G T APEX2 Missense_Mutation p.R516M 0.35 deleterious_low_confidence(0.03) benign(0.17) TCGA-77-8140-01 X 57618787 57618787 C G ZXDB Silent p.G102G 0.26 TCGA-77-8140-01 X 69424927 69424927 C A DGAT2L6 Missense_Mutation p.P329T 0.24 tolerated(0.15) benign(0.307) TCGA-77-8140-01 X 69673625 69673625 G C DLG3 Missense_Mutation p.R428S 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-77-8140-01 X 70148368 70148368 G T SLC7A3 Missense_Mutation p.H215Q 0.28 deleterious(0.05) benign(0.146) TCGA-77-8140-01 X 70344823 70344823 C T MED12 Intron 0.25 TCGA-77-8140-01 X 72433178 72433178 C G NAP1L2 Missense_Mutation p.R384T 0.24 tolerated(0.18) benign(0.054) TCGA-77-8140-01 X 73812504 73812504 G T RLIM Missense_Mutation p.P216T 0.22 tolerated(0.07) unknown(0) TCGA-77-8140-01 X 75649442 75649442 T A MAGEE1 Silent p.S373S 0.25 TCGA-77-8140-01 X 75650412 75650412 A G MAGEE1 Missense_Mutation p.R697G 0.67 deleterious(0) possibly_damaging(0.867) TCGA-77-8140-01 X 76889171 76889171 C A ATRX Missense_Mutation p.L1613F 0.31 probably_damaging(0.997) TCGA-77-8140-01 X 76937658 76937658 C G ATRX Missense_Mutation p.K1030N 0.16 benign(0.001) TCGA-77-8140-01 X 76937672 76937672 A - ATRX Frame_Shift_Del p.C1026Vfs*7 0.14 TCGA-77-8140-01 X 77913347 77913347 G T ZCCHC5 Missense_Mutation p.P191T 0.17 tolerated(0.31) benign(0.087) TCGA-77-8140-01 X 83724439 83724439 A C HDX Missense_Mutation p.W98G 0.36 tolerated(0.47) possibly_damaging(0.795) TCGA-77-8140-01 X 85128099 85128099 A G CHM Silent p.S576S 0.23 TCGA-77-8140-01 X 86067880 86067880 C G DACH2 Missense_Mutation p.P421R 0.28 deleterious(0) possibly_damaging(0.689) TCGA-77-8140-01 X 86924387 86924387 G A KLHL4 Missense_Mutation p.G719E 0.21 tolerated_low_confidence(0.06) probably_damaging(0.969) TCGA-77-8140-01 X 91133979 91133979 C A PCDH11X Missense_Mutation p.Q914K 0.21 tolerated(0.12) benign(0.081) TCGA-77-8140-01 X 99658647 99658647 G A PCDH19 Silent p.I721I 0.17 TCGA-77-8140-01 X 99888466 99888466 G C TSPAN6 Missense_Mutation p.P174R 0.27 deleterious(0) probably_damaging(0.993) TCGA-77-8143-01 10 115372031 115372031 G T NRAP Missense_Mutation p.L1154M 0.54 tolerated(0.07) benign(0.285) TCGA-77-8143-01 10 117001506 117001506 A G ATRNL1 Missense_Mutation p.Y560C 0.83 deleterious(0) probably_damaging(1) TCGA-77-8143-01 10 25887540 25887540 C A GPR158 Silent p.T995T 0.14 TCGA-77-8143-01 10 32573676 32573676 G A EPC1 Missense_Mutation p.T565I 0.43 tolerated(0.21) benign(0.001) TCGA-77-8143-01 10 334301 334302 - AA DIP2C Intron 0.23 TCGA-77-8143-01 10 38343336 38343336 G T ZNF33A Missense_Mutation p.S95I 0.36 tolerated(0.11) benign(0.407) TCGA-77-8143-01 10 460018 460018 C A DIP2C Nonsense_Mutation p.E298* 0.30 TCGA-77-8143-01 10 89692790 89692790 G C PTEN Missense_Mutation p.D92H 0.81 deleterious(0) probably_damaging(1) TCGA-77-8143-01 10 97917809 97917809 A T ZNF518A RNA 0.59 TCGA-77-8143-01 11 105781193 105781193 C A GRIA4 Silent p.V397V 0.69 TCGA-77-8143-01 11 108276276 108276276 G C C11orf65 Missense_Mutation p.S147C 0.77 tolerated(0.13) possibly_damaging(0.773) TCGA-77-8143-01 11 1101022 1101022 A G MUC2 Missense_Mutation p.K2474R 0.39 unknown(0) TCGA-77-8143-01 11 113140983 113140983 C G NCAM1 Silent p.L784L 0.65 TCGA-77-8143-01 11 124745223 124745223 C A ROBO3 Missense_Mutation p.P764T 0.50 tolerated(0.3) probably_damaging(0.999) TCGA-77-8143-01 11 126278009 126278009 C T ST3GAL4 Silent p.R119R 0.67 TCGA-77-8143-01 11 17418821 17418821 C G ABCC8 Missense_Mutation p.D1303H 0.44 deleterious(0) possibly_damaging(0.541) TCGA-77-8143-01 11 18195104 18195104 G T MRGPRX4 Missense_Mutation p.V101L 0.32 tolerated(0.08) benign(0.074) TCGA-77-8143-01 11 20939786 20939786 C G NELL1 Missense_Mutation p.P221R 0.14 deleterious(0) probably_damaging(0.992) TCGA-77-8143-01 11 55587481 55587481 G A OR5D18 Missense_Mutation p.A126T 0.36 deleterious(0) possibly_damaging(0.889) TCGA-77-8143-01 11 61734811 61734811 G A FTH1 Silent p.L29L 0.29 TCGA-77-8143-01 11 63137809 63137809 C G SLC22A9 Missense_Mutation p.P94R 0.42 deleterious(0) probably_damaging(0.91) TCGA-77-8143-01 11 68839400 68839400 C T TPCN2 Nonsense_Mutation p.Q324* 0.15 TCGA-77-8143-01 11 88780988 88780988 C T GRM5 Missense_Mutation p.G18E 0.71 tolerated(0.95) benign(0.016) TCGA-77-8143-01 12 102455738 102455738 C G CCDC53 Translation_Start_Site p.M1? 0.45 deleterious(0) probably_damaging(0.998) TCGA-77-8143-01 12 10313412 10313412 C A OLR1 Missense_Mutation p.L179F 0.36 deleterious(0) probably_damaging(0.991) TCGA-77-8143-01 12 106632871 106632871 T A CKAP4 Missense_Mutation p.L580F 0.26 deleterious(0.04) probably_damaging(0.967) TCGA-77-8143-01 12 108985574 108985574 C A TMEM119 Nonsense_Mutation p.G196* 0.18 TCGA-77-8143-01 12 121711971 121711971 C A CAMKK2 Missense_Mutation p.R120L 0.53 deleterious(0) possibly_damaging(0.577) TCGA-77-8143-01 12 13768179 13768179 A G GRIN2B Missense_Mutation p.M508T 0.26 deleterious(0) possibly_damaging(0.623) TCGA-77-8143-01 12 26784865 26784865 C T ITPR2 Silent p.G956G 0.07 TCGA-77-8143-01 12 38714860 38714860 G A ALG10B Missense_Mutation p.V423I 0.22 tolerated(0.45) benign(0.003) TCGA-77-8143-01 12 46211602 46211602 G A ARID2 Missense_Mutation p.V190I 0.38 tolerated(0.14) benign(0.032) TCGA-77-8143-01 12 55725840 55725840 G T OR6C3 Missense_Mutation p.R119L 0.34 deleterious_low_confidence(0.01) benign(0.006) TCGA-77-8143-01 12 57865372 57865372 C A GLI1 Missense_Mutation p.P950H 0.44 deleterious_low_confidence(0) possibly_damaging(0.759) TCGA-77-8143-01 12 64536176 64536176 G T SRGAP1 Missense_Mutation p.E994D 0.27 tolerated_low_confidence(0.14) benign(0.02) TCGA-77-8143-01 12 70956725 70956725 C A PTPRB Missense_Mutation p.S1356I 0.21 deleterious(0.03) benign(0.272) TCGA-77-8143-01 12 88586466 88586466 G C TMTC3 Missense_Mutation p.D598H 0.32 deleterious(0) probably_damaging(0.946) TCGA-77-8143-01 12 91502517 91502517 A G LUM Silent p.H80H 0.23 TCGA-77-8143-01 13 37012820 37012820 C T CCNA1 Missense_Mutation p.P237S 0.10 deleterious(0.04) possibly_damaging(0.791) TCGA-77-8143-01 14 102550846 102550846 C T HSP90AA1 Missense_Mutation p.R468H 0.50 deleterious_low_confidence(0.03) unknown(0) TCGA-77-8143-01 14 31535523 31535523 T C AP4S1 Missense_Mutation p.S41P 0.41 deleterious(0.03) probably_damaging(0.966) TCGA-77-8143-01 14 52486011 52486011 G C NID2 Missense_Mutation p.D932E 0.39 tolerated(0.8) benign(0.008) TCGA-77-8143-01 14 71227759 71227759 T G MAP3K9 Missense_Mutation p.I321L 0.35 deleterious(0.01) possibly_damaging(0.733) TCGA-77-8143-01 14 80669066 80669066 C A DIO2 Missense_Mutation p.S299I 0.58 deleterious(0) benign(0.43) TCGA-77-8143-01 14 95053972 95053972 C G SERPINA5 Missense_Mutation p.I91M 0.53 deleterious(0.04) probably_damaging(0.994) TCGA-77-8143-01 15 25463641 25463641 T C SNORD115-27 5'Flank 0.27 TCGA-77-8143-01 15 43826933 43826933 G T PPIP5K1 Missense_Mutation p.S1414Y 0.24 deleterious_low_confidence(0) benign(0.372) TCGA-77-8143-01 15 43888609 43888609 C T CKMT1B Silent p.H252H 0.14 TCGA-77-8143-01 15 51860694 51860694 T C DMXL2 Missense_Mutation p.K92R 0.46 deleterious(0.04) probably_damaging(0.998) TCGA-77-8143-01 15 65490828 65490828 G T CILP Missense_Mutation p.A599D 0.19 deleterious(0) possibly_damaging(0.588) TCGA-77-8143-01 15 78457364 78457364 C T IDH3A Silent p.L270L 0.37 TCGA-77-8143-01 16 10626941 10626941 C T EMP2 Missense_Mutation p.V109I 0.27 tolerated(0.53) possibly_damaging(0.832) TCGA-77-8143-01 16 11064994 11064995 TT - CLEC16A Frame_Shift_Del p.F169Cfs*14 0.21 TCGA-77-8143-01 16 2231325 2231325 G A CASKIN1 Silent p.L682L 0.45 TCGA-77-8143-01 16 51174547 51174547 C A SALL1 Missense_Mutation p.G529V 0.66 deleterious(0) probably_damaging(0.996) TCGA-77-8143-01 16 51174548 51174548 C T SALL1 Missense_Mutation p.G529S 0.65 deleterious(0) probably_damaging(0.946) TCGA-77-8143-01 16 70404136 70404136 C G DDX19A Missense_Mutation p.T344R 0.11 deleterious(0.01) possibly_damaging(0.858) TCGA-77-8143-01 16 70416749 70416749 C A ST3GAL2 Missense_Mutation p.G280W 0.53 probably_damaging(0.996) TCGA-77-8143-01 16 70416750 70416750 C A ST3GAL2 Silent p.T279T 0.53 TCGA-77-8143-01 16 89350129 89350129 T C ANKRD11 Missense_Mutation p.R941G 0.72 probably_damaging(0.989) TCGA-77-8143-01 17 26087197 26087197 C T NOS2 Silent p.R1006R 0.16 TCGA-77-8143-01 17 47903385 47903385 G T KAT7 Nonsense_Mutation p.E502* 0.70 TCGA-77-8143-01 17 6927521 6927521 G C BCL6B Missense_Mutation p.R100P 0.77 deleterious(0.03) probably_damaging(0.994) TCGA-77-8143-01 17 75210027 75210027 C T SEC14L1 Silent p.S690S 0.72 TCGA-77-8143-01 17 7577545 7577551 TGCCGCC - TP53 Frame_Shift_Del p.G244* 0.63 TCGA-77-8143-01 17 80038718 80038718 G A FASN Missense_Mutation p.P2226S 0.26 tolerated(0.06) probably_damaging(0.922) TCGA-77-8143-01 17 9783726 9783726 T C GLP2R Silent p.L393L 0.04 TCGA-77-8143-01 18 30791902 30791902 T C CCDC178 Silent p.R732R 0.13 TCGA-77-8143-01 18 54605830 54605830 G T WDR7 Missense_Mutation p.A1300S 0.30 tolerated(0.44) benign(0.077) TCGA-77-8143-01 18 61597278 61597278 G T SERPINB10 Splice_Site p.X164_splice 0.31 TCGA-77-8143-01 18 77171414 77171414 G A NFATC1 Missense_Mutation p.G367D 0.31 tolerated(0.28) possibly_damaging(0.721) TCGA-77-8143-01 19 11134246 11134246 T G SMARCA4 Missense_Mutation p.V971G 0.55 probably_damaging(1) TCGA-77-8143-01 19 22784182 22784182 C A AC011467.1 5'Flank 0.62 TCGA-77-8143-01 19 34840036 34840036 G C KIAA0355 Missense_Mutation p.V935L 0.62 tolerated_low_confidence(0.09) probably_damaging(0.94) TCGA-77-8143-01 19 40732337 40732337 G A CNTD2 Missense_Mutation p.A71V 0.81 tolerated(0.08) benign(0.222) TCGA-77-8143-01 19 43519371 43519371 A G PSG11 Silent p.F287F 0.64 TCGA-77-8143-01 19 51559947 51559947 C G KLK13 Missense_Mutation p.R244P 0.62 deleterious(0) probably_damaging(0.987) TCGA-77-8143-01 19 54711428 54711428 C T RPS9 Silent p.D190D 0.55 TCGA-77-8143-01 19 56477589 56477589 G C NLRP8 Missense_Mutation p.V742L 0.54 tolerated(0.3) benign(0.018) TCGA-77-8143-01 19 8842032 8842032 C T OR2Z1 Silent p.I214I 0.72 TCGA-77-8143-01 1 152191139 152191139 C T HRNR Missense_Mutation p.G989D 0.49 unknown(0) TCGA-77-8143-01 1 16374840 16374840 C A CLCNKB Silent p.G167G 0.55 TCGA-77-8143-01 1 166926015 166926015 C A ILDR2 Missense_Mutation p.D152Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-77-8143-01 1 16918544 16918544 G A NBPF1 5'UTR 0.04 TCGA-77-8143-01 1 175365684 175365684 G T TNR Silent p.A412A 0.35 TCGA-77-8143-01 1 176852016 176852016 A G ASTN1 Missense_Mutation p.L1114P 0.16 deleterious(0) probably_damaging(0.999) TCGA-77-8143-01 1 202698970 202698970 C A KDM5B Missense_Mutation p.E1454D 0.23 tolerated(0.09) benign(0.003) TCGA-77-8143-01 1 22207252 22207252 C G HSPG2 Missense_Mutation p.R632P 0.17 possibly_damaging(0.778) TCGA-77-8143-01 1 2430597 2430597 G T PLCH2 Missense_Mutation p.V810F 0.12 deleterious(0) probably_damaging(1) TCGA-77-8143-01 1 248801859 248801859 C A OR2T35 Missense_Mutation p.R234L 0.23 deleterious(0.01) possibly_damaging(0.572) TCGA-77-8143-01 1 60139745 60139745 C A FGGY Silent p.S508S 0.33 TCGA-77-8143-01 1 92174302 92174302 G C TGFBR3 Silent p.A735A 0.50 TCGA-77-8143-01 21 11039104 11039104 C T BAGE2 RNA 0.05 TCGA-77-8143-01 21 41450656 41450656 C T DSCAM Missense_Mutation p.A1557T 0.29 tolerated(0.14) benign(0.166) TCGA-77-8143-01 21 45742071 45742071 T C PFKL Missense_Mutation p.M465T 0.33 tolerated(0.42) benign(0.232) TCGA-77-8143-01 22 31042766 31042766 C G SLC35E4 Silent p.L267L 0.65 TCGA-77-8143-01 22 34046527 34046527 G A LARGE Silent p.A78A 0.64 TCGA-77-8143-01 22 37482368 37482368 A G TMPRSS6 Missense_Mutation p.Y319H 0.58 tolerated(0.07) probably_damaging(0.95) TCGA-77-8143-01 22 43218279 43218279 G A ARFGAP3 Missense_Mutation p.S270L 0.25 tolerated(0.06) benign(0.003) TCGA-77-8143-01 22 43218333 43218333 G A ARFGAP3 Missense_Mutation p.A252V 0.25 tolerated(0.73) benign(0.001) TCGA-77-8143-01 2 135099167 135099167 G A MGAT5 Missense_Mutation p.V272I 0.34 tolerated(0.19) benign(0.037) TCGA-77-8143-01 2 136026573 136026573 C A ZRANB3 Nonsense_Mutation p.G449* 0.51 TCGA-77-8143-01 2 155566217 155566217 A T KCNJ3 Missense_Mutation p.T269S 0.46 deleterious(0) probably_damaging(0.998) TCGA-77-8143-01 2 179443711 179443711 C T TTN Silent p.E22682E 0.47 TCGA-77-8143-01 2 179577223 179577223 C T TTN Silent p.S9142S 0.19 TCGA-77-8143-01 2 185800739 185800739 G T ZNF804A Missense_Mutation p.G206W 0.26 deleterious(0) probably_damaging(1) TCGA-77-8143-01 2 220494319 220494319 C T SLC4A3 Silent p.D171D 0.10 TCGA-77-8143-01 2 231978599 231978599 A G HTR2B Missense_Mutation p.F133L 0.62 tolerated(0.15) probably_damaging(0.977) TCGA-77-8143-01 2 241404968 241404968 G A GPC1 Silent p.P449P 0.06 TCGA-77-8143-01 2 43459887 43459887 C T THADA Missense_Mutation p.D1811N 0.13 deleterious(0.03) possibly_damaging(0.694) TCGA-77-8143-01 2 77746441 77746441 A T LRRTM4 Missense_Mutation p.F185Y 0.21 tolerated(0.09) probably_damaging(0.998) TCGA-77-8143-01 2 89399434 89399434 C A IGKV1-16 Missense_Mutation p.G90V 0.16 deleterious(0) probably_damaging(0.977) TCGA-77-8143-01 2 89399435 89399435 C A IGKV1-16 Missense_Mutation p.G90W 0.16 deleterious(0.01) possibly_damaging(0.856) TCGA-77-8143-01 3 128344396 128344396 A G RPN1 Missense_Mutation p.L459P 0.41 deleterious(0) probably_damaging(0.993) TCGA-77-8143-01 3 130452633 130452633 A C PIK3R4 Silent p.L403L 0.20 TCGA-77-8143-01 3 131102042 131102042 C A NUDT16 3'UTR 0.37 TCGA-77-8143-01 3 135721412 135721412 C T PPP2R3A Missense_Mutation p.P358S 0.37 tolerated_low_confidence(0.82) benign(0.004) TCGA-77-8143-01 3 158372337 158372337 G T GFM1 Missense_Mutation p.D334Y 0.40 deleterious(0.02) possibly_damaging(0.594) TCGA-77-8143-01 3 164906828 164906828 G T SLITRK3 Silent p.L597L 0.35 TCGA-77-8143-01 3 39307567 39307567 T A CX3CR1 Missense_Mutation p.H177L 0.69 tolerated(0.08) possibly_damaging(0.65) TCGA-77-8143-01 3 40429555 40429555 A T ENTPD3 Missense_Mutation p.T3S 0.57 tolerated_low_confidence(0.1) benign(0.006) TCGA-77-8143-01 3 49094647 49094647 T G QRICH1 Missense_Mutation p.H329P 0.87 deleterious(0) probably_damaging(0.934) TCGA-77-8143-01 3 88205597 88205597 A C C3orf38 Missense_Mutation p.I268L 0.46 deleterious(0.01) probably_damaging(0.985) TCGA-77-8143-01 4 106157729 106157729 A G TET2 Missense_Mutation p.D877G 0.29 tolerated(0.26) benign(0.008) TCGA-77-8143-01 4 155156720 155156720 A G DCHS2 Silent p.Y2573Y 0.55 TCGA-77-8143-01 4 159048639 159048639 C T FAM198B Missense_Mutation p.D502N 0.40 deleterious(0.01) possibly_damaging(0.715) TCGA-77-8143-01 4 159048640 159048640 G C FAM198B Missense_Mutation p.I501M 0.42 deleterious(0) possibly_damaging(0.903) TCGA-77-8143-01 4 184614781 184614781 A G TRAPPC11 Silent p.L759L 0.53 TCGA-77-8143-01 4 187003574 187003574 T C TLR3 Missense_Mutation p.L245S 0.21 deleterious(0) probably_damaging(0.997) TCGA-77-8143-01 4 74963382 74963382 C A CXCL2 3'UTR 0.40 TCGA-77-8143-01 4 95508158 95508158 C A PDLIM5 Intron 0.33 TCGA-77-8143-01 5 10280724 10280724 C A CMBL Missense_Mutation p.K193N 0.57 tolerated(0.08) benign(0.073) TCGA-77-8143-01 5 127863630 127863630 C A FBN2 Missense_Mutation p.G156V 0.57 deleterious(0) probably_damaging(0.953) TCGA-77-8143-01 5 128932279 128932279 G C ADAMTS19 Missense_Mutation p.S461T 0.67 deleterious(0) probably_damaging(0.938) TCGA-77-8143-01 5 137680878 137680878 C T FAM53C Silent p.V167V 0.06 TCGA-77-8143-01 5 150656930 150656930 A G SLC36A3 3'UTR 0.72 TCGA-77-8143-01 5 151180332 151180332 G A G3BP1 Missense_Mutation p.V366M 0.07 deleterious(0.03) benign(0.107) TCGA-77-8143-01 5 24511602 24511602 A G CDH10 Missense_Mutation p.L279P 0.26 tolerated(1) benign(0) TCGA-77-8143-01 5 33938163 33938163 G T RXFP3 Missense_Mutation p.A440S 0.10 tolerated(0.22) benign(0.007) TCGA-77-8143-01 5 34824223 34824223 C T RAI14 Missense_Mutation p.A762V 0.40 tolerated(0.29) benign(0.412) TCGA-77-8143-01 5 38904022 38904022 G A OSMR Missense_Mutation p.V344I 0.40 tolerated(0.48) benign(0.022) TCGA-77-8143-01 6 146755729 146755729 G A GRM1 Missense_Mutation p.E1128K 0.09 tolerated_low_confidence(0.49) benign(0.014) TCGA-77-8143-01 6 152501392 152501392 T G SYNE1 Missense_Mutation p.N7780T 0.12 probably_damaging(0.944) TCGA-77-8143-01 6 152540252 152540252 C A SYNE1 Silent p.L7310L 0.29 TCGA-77-8143-01 6 160176527 160176527 A G WTAP Missense_Mutation p.S359G 0.18 deleterious_low_confidence(0.01) benign(0.009) TCGA-77-8143-01 6 163985636 163985636 G T QKI Intron 0.52 TCGA-77-8143-01 6 29581077 29581077 C A GABBR1 Missense_Mutation p.Q503H 0.32 tolerated(0.29) benign(0.004) TCGA-77-8143-01 6 30121994 30121994 C A TRIM10 Nonsense_Mutation p.E400* 0.31 TCGA-77-8143-01 6 39325072 39325072 G C KIF6 Missense_Mutation p.Q721E 0.41 tolerated(0.52) benign(0.001) TCGA-77-8143-01 6 7577248 7577248 T G DSP Missense_Mutation p.I950M 0.34 benign(0.044) TCGA-77-8143-01 6 82927808 82927808 C T IBTK Nonsense_Mutation p.W432* 0.21 TCGA-77-8143-01 6 84865118 84865118 T C KIAA1009 Missense_Mutation p.M965V 0.19 deleterious(0) probably_damaging(0.917) TCGA-77-8143-01 7 12728364 12728364 G T ARL4A Missense_Mutation p.W162L 0.52 deleterious(0.03) probably_damaging(0.998) TCGA-77-8143-01 7 129847851 129847851 C G SSMEM1 Missense_Mutation p.S34C 0.36 deleterious(0.01) benign(0.077) TCGA-77-8143-01 7 130370130 130370130 C G TSGA13 5'UTR 0.21 TCGA-77-8143-01 7 135262683 135262683 C G NUP205 Nonsense_Mutation p.S263* 0.53 TCGA-77-8143-01 7 135291499 135291499 G T NUP205 Missense_Mutation p.G969V 0.37 tolerated(0.22) benign(0.099) TCGA-77-8143-01 7 143701511 143701511 G T OR6B1 Missense_Mutation p.C141F 0.42 deleterious(0.01) probably_damaging(1) TCGA-77-8143-01 7 82585768 82585768 C A PCLO Missense_Mutation p.D1501Y 0.28 unknown(0) TCGA-77-8143-01 7 92762147 92762147 C A SAMD9L Silent p.V1046V 0.43 TCGA-77-8143-01 7 94228106 94228106 G A SGCE Missense_Mutation p.P412S 0.23 deleterious(0) probably_damaging(0.982) TCGA-77-8143-01 7 94996720 94996720 G C PON3 Missense_Mutation p.R150G 0.23 tolerated(0.16) benign(0.324) TCGA-77-8143-01 7 97483905 97483905 T C ASNS Missense_Mutation p.T409A 0.46 deleterious(0.01) possibly_damaging(0.458) TCGA-77-8143-01 7 99704915 99704915 G C TAF6 Missense_Mutation p.A700G 0.16 deleterious_low_confidence(0.02) benign(0.019) TCGA-77-8143-01 8 104442867 104442867 G T DCAF13 Missense_Mutation p.D370Y 0.46 deleterious(0) probably_damaging(0.999) TCGA-77-8143-01 8 113564906 113564906 G C CSMD3 Missense_Mutation p.I1426M 0.30 deleterious(0) probably_damaging(0.989) TCGA-77-8143-01 8 139144912 139144912 G A FAM135B Missense_Mutation p.A1382V 0.29 deleterious(0) probably_damaging(0.99) TCGA-77-8143-01 8 139155261 139155261 C T FAM135B Missense_Mutation p.R1211Q 0.46 deleterious(0) probably_damaging(0.909) TCGA-77-8143-01 8 14412406 14412406 G A SGCZ Silent p.T23T 0.57 TCGA-77-8143-01 8 145106194 145106194 C A OPLAH 3'UTR 0.56 TCGA-77-8143-01 8 145753126 145753126 C T C8orf82 Missense_Mutation p.R84H 0.13 tolerated(0.17) benign(0.014) TCGA-77-8143-01 8 37797469 37797469 C T GOT1L1 Missense_Mutation p.D27N 0.55 deleterious(0) probably_damaging(1) TCGA-77-8143-01 8 77776436 77776436 T A ZFHX4 Missense_Mutation p.S3496T 0.37 probably_damaging(0.946) TCGA-77-8143-01 8 79629608 79629608 A T ZC2HC1A Missense_Mutation p.K286N 0.41 tolerated(0.21) benign(0.33) TCGA-77-8143-01 9 139115949 139115949 C T QSOX2 Missense_Mutation p.R163Q 0.60 deleterious(0.01) probably_damaging(1) TCGA-77-8143-01 9 82189813 82189813 G A TLE4 Missense_Mutation p.A57T 0.11 deleterious(0.02) probably_damaging(1) TCGA-77-8143-01 9 88694218 88694218 G A GOLM1 Silent p.N6N 0.29 TCGA-77-8143-01 9 968119 968119 G T DMRT1 Missense_Mutation p.V368F 0.11 deleterious(0) possibly_damaging(0.447) TCGA-77-8143-01 X 129498692 129498692 G A SLC25A14 Missense_Mutation p.G229R 0.35 deleterious(0.04) benign(0.082) TCGA-77-8143-01 X 129629696 129629696 C A RP1-274L7.1 Intron 0.64 TCGA-77-8143-01 X 134706773 134706773 G A DDX26B Missense_Mutation p.V441M 0.79 tolerated(0.09) probably_damaging(0.979) TCGA-77-8143-01 X 135405248 135405248 G T GPR112 Missense_Mutation p.G128C 0.77 deleterious(0) probably_damaging(1) TCGA-77-8143-01 X 24512955 24512955 C G PDK3 Missense_Mutation p.P68R 0.72 deleterious(0) probably_damaging(1) TCGA-77-8143-01 X 41586548 41586548 T G GPR82 Missense_Mutation p.V90G 0.80 deleterious(0) possibly_damaging(0.549) TCGA-77-8143-01 X 75649927 75649927 G T MAGEE1 Missense_Mutation p.R535L 0.88 deleterious(0.05) possibly_damaging(0.883) TCGA-77-8143-01 X 78216922 78216922 C A P2RY10 Missense_Mutation p.P302Q 0.70 deleterious(0) probably_damaging(0.998) TCGA-77-8144-01 10 101841322 101841322 C - CPN1 Frame_Shift_Del p.V21* 0.16 TCGA-77-8144-01 10 104679282 104679282 A C CNNM2 Missense_Mutation p.T349P 0.39 deleterious(0.01) possibly_damaging(0.628) TCGA-77-8144-01 10 114170389 114170389 C G ACSL5 Silent p.T320T 0.38 TCGA-77-8144-01 10 119302929 119302929 T C EMX2 Missense_Mutation p.F51L 0.29 tolerated(0.69) benign(0.005) TCGA-77-8144-01 10 126523124 126523124 G T FAM175B Missense_Mutation p.A278S 0.40 tolerated(0.39) benign(0.007) TCGA-77-8144-01 10 48385947 48385947 T C RBP3 Missense_Mutation p.M1049V 0.55 tolerated(0.3) benign(0.072) TCGA-77-8144-01 10 50819545 50819545 C A SLC18A3 Silent p.L253L 0.40 TCGA-77-8144-01 10 52595965 52595965 T G A1CF Missense_Mutation p.K166T 0.40 deleterious(0) probably_damaging(0.999) TCGA-77-8144-01 10 70252928 70252928 C A SLC25A16 Missense_Mutation p.G191C 0.43 deleterious(0) probably_damaging(1) TCGA-77-8144-01 10 91405006 91405006 C G PANK1 Silent p.A18A 0.17 TCGA-77-8144-01 10 97423836 97423837 - AGAG TCTN3 Frame_Shift_Ins p.E605Sfs*10 0.26 TCGA-77-8144-01 10 99226600 99226600 T C MMS19 Silent p.L452L 0.45 TCGA-77-8144-01 11 102592384 102592384 G T MMP8 Missense_Mutation p.Q153K 0.31 tolerated(0.41) benign(0.003) TCGA-77-8144-01 11 107943151 107943152 - T CUL5 Frame_Shift_Ins p.A324Gfs*8 0.21 TCGA-77-8144-01 11 113111510 113111510 G T NCAM1 Intron 0.30 TCGA-77-8144-01 11 114442038 114442038 G T NXPE4 Silent p.A419A 0.35 TCGA-77-8144-01 11 118850176 118850176 G A FOXR1 Missense_Mutation p.D137N 0.38 tolerated(0.12) benign(0.09) TCGA-77-8144-01 11 118966020 118966020 C A H2AFX Missense_Mutation p.G29C 0.38 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-77-8144-01 11 119031607 119031607 G T ABCG4 Missense_Mutation p.V578L 0.23 tolerated(0.11) benign(0.028) TCGA-77-8144-01 11 119059089 119059089 G A PDZD3 Silent p.P296P 0.31 TCGA-77-8144-01 11 121498424 121498424 C A SORL1 Missense_Mutation p.S2175R 0.27 deleterious(0) probably_damaging(0.998) TCGA-77-8144-01 11 1270404 1270404 C A MUC5B Silent p.A4098A 0.28 TCGA-77-8144-01 11 134073987 134073987 T C NCAPD3 Missense_Mutation p.Y390C 0.30 deleterious(0) probably_damaging(0.971) TCGA-77-8144-01 11 14902165 14902165 T A CYP2R1 Nonsense_Mutation p.K173* 0.15 TCGA-77-8144-01 11 3039651 3039651 T A CARS Missense_Mutation p.E539V 0.29 deleterious(0) probably_damaging(1) TCGA-77-8144-01 11 31811517 31811517 G T PAX6 Missense_Mutation p.P426T 0.42 tolerated(0.13) benign(0.01) TCGA-77-8144-01 11 36484211 36484211 C T PRR5L Silent p.D344D 0.33 TCGA-77-8144-01 11 4674167 4674167 A G OR51E1 Silent p.T137T 0.20 TCGA-77-8144-01 11 46772746 46772746 G A CKAP5 Silent p.L1794L 0.38 TCGA-77-8144-01 11 46916804 46916804 C A LRP4 Missense_Mutation p.G408C 0.27 tolerated(0.05) possibly_damaging(0.865) TCGA-77-8144-01 11 49974183 49974183 G T OR4C13 Missense_Mutation p.C70F 0.23 deleterious_low_confidence(0.03) possibly_damaging(0.646) TCGA-77-8144-01 11 5173097 5173097 C A OR52A1 Missense_Mutation p.R168L 0.20 deleterious(0.02) benign(0.168) TCGA-77-8144-01 11 5536593 5536593 G T UBQLNL Missense_Mutation p.T360N 0.44 tolerated(0.19) benign(0.23) TCGA-77-8144-01 11 55579610 55579610 C A OR5L1 Missense_Mutation p.T223N 0.40 deleterious(0.01) possibly_damaging(0.612) TCGA-77-8144-01 11 55861606 55861606 G T OR8I2 Missense_Mutation p.V275L 0.36 deleterious(0.02) benign(0.221) TCGA-77-8144-01 11 55889992 55889992 G A OR8H3 Silent p.L48L 0.27 TCGA-77-8144-01 11 56086453 56086453 C A OR8K3 Missense_Mutation p.A224D 0.24 deleterious_low_confidence(0.01) probably_damaging(0.968) TCGA-77-8144-01 11 56511223 56511223 G T OR9G4 Missense_Mutation p.T22N 0.29 deleterious(0) possibly_damaging(0.728) TCGA-77-8144-01 11 58978843 58978843 G T MPEG1 Missense_Mutation p.A499D 0.36 tolerated(0.05) benign(0.01) TCGA-77-8144-01 11 61105586 61105586 T G DAK Missense_Mutation p.H59Q 0.41 deleterious(0) probably_damaging(0.996) TCGA-77-8144-01 11 62376049 62376049 C T EML3 Missense_Mutation p.E359K 0.27 deleterious(0) possibly_damaging(0.852) TCGA-77-8144-01 11 66107592 66107592 C T BRMS1 Missense_Mutation p.G210S 0.30 deleterious(0.05) benign(0.335) TCGA-77-8144-01 11 6648754 6648754 A T DCHS1 Missense_Mutation p.L1839Q 0.61 deleterious(0.03) possibly_damaging(0.507) TCGA-77-8144-01 11 70028687 70028687 A G ANO1 Missense_Mutation p.H828R 0.28 tolerated(0.08) benign(0.042) TCGA-77-8144-01 11 71821406 71821406 G T LRTOMT 3'UTR 0.35 TCGA-77-8144-01 11 72554591 72554591 T A FCHSD2 Intron 0.21 TCGA-77-8144-01 11 73022284 73022284 A G ARHGEF17 Silent p.V867V 0.32 TCGA-77-8144-01 11 75173846 75173846 T C GDPD5 Missense_Mutation p.Y69C 0.37 deleterious(0) probably_damaging(0.99) TCGA-77-8144-01 11 7663568 7663568 G T PPFIBP2 Silent p.T519T 0.43 TCGA-77-8144-01 11 8013655 8013655 A G EIF3F Missense_Mutation p.K154E 0.68 deleterious(0.05) benign(0.217) TCGA-77-8144-01 11 92087723 92087723 A T FAT3 Missense_Mutation p.R815S 0.30 possibly_damaging(0.794) TCGA-77-8144-01 11 92531223 92531223 G A FAT3 Missense_Mutation p.E1682K 0.34 probably_damaging(1) TCGA-77-8144-01 11 92715420 92715420 G T MTNR1B Missense_Mutation p.G344V 0.40 tolerated(0.17) benign(0.002) TCGA-77-8144-01 11 94731217 94731217 C T KDM4D Silent p.A227A 0.33 TCGA-77-8144-01 12 100796195 100796195 A T SLC17A8 Missense_Mutation p.N281Y 0.20 deleterious(0.02) benign(0.004) TCGA-77-8144-01 12 10251405 10251405 A G CLEC1A Splice_Site p.X39_splice 0.46 TCGA-77-8144-01 12 112915756 112915756 G T PTPN11 Silent p.R343R 0.38 TCGA-77-8144-01 12 119588961 119588961 C T SRRM4 Nonsense_Mutation p.R406* 0.21 TCGA-77-8144-01 12 12022719 12022719 C T ETV6 Silent p.H275H 0.29 TCGA-77-8144-01 12 124103241 124103241 A G DDX55 Missense_Mutation p.Q397R 0.12 tolerated(0.4) benign(0.078) TCGA-77-8144-01 12 13720081 13720081 C A GRIN2B Missense_Mutation p.G826W 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-77-8144-01 12 14577273 14577273 G A ATF7IP Missense_Mutation p.G142R 0.28 tolerated_low_confidence(0.19) benign(0.007) TCGA-77-8144-01 12 15661681 15661681 G C PTPRO Missense_Mutation p.E482Q 0.27 deleterious(0) probably_damaging(0.995) TCGA-77-8144-01 12 21242943 21242943 C A SLCO1B7 Missense_Mutation p.T609N 0.44 tolerated(0.34) benign(0.011) TCGA-77-8144-01 12 21242944 21242944 C A SLCO1B7 Silent p.T609T 0.33 TCGA-77-8144-01 12 21998536 21998536 C A ABCC9 Splice_Site p.X1032_splice 0.44 TCGA-77-8144-01 12 31144809 31144809 A T TSPAN11 Missense_Mutation p.T241S 0.29 tolerated(0.19) possibly_damaging(0.888) TCGA-77-8144-01 12 39087551 39087551 C A CPNE8 Missense_Mutation p.V351F 0.35 deleterious(0) benign(0.305) TCGA-77-8144-01 12 49424717 49424717 C A KMT2D Missense_Mutation p.G4544W 0.50 unknown(0) TCGA-77-8144-01 12 52448733 52448733 G A NR4A1 Silent p.L220L 0.21 TCGA-77-8144-01 12 53621266 53621266 C A RARG Missense_Mutation p.G22W 0.50 deleterious_low_confidence(0.04) benign(0.339) TCGA-77-8144-01 12 55641951 55641951 C A OR6C74 Missense_Mutation p.Q294K 0.48 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-77-8144-01 12 56398631 56398631 G C SUOX Missense_Mutation p.W486C 0.31 deleterious(0) probably_damaging(1) TCGA-77-8144-01 12 56995463 56995463 G C BAZ2A Missense_Mutation p.S1315C 0.19 tolerated(0.05) benign(0.001) TCGA-77-8144-01 12 6437022 6437022 G T PLEKHG6 Missense_Mutation p.R758L 0.47 tolerated_low_confidence(0.16) benign(0.024) TCGA-77-8144-01 12 64505561 64505561 G T SRGAP1 Nonsense_Mutation p.E647* 0.50 TCGA-77-8144-01 12 70049047 70049047 G A BEST3 Silent p.I549I 0.39 TCGA-77-8144-01 12 7463290 7463290 C A ACSM4 Missense_Mutation p.L190M 0.22 tolerated(0.05) possibly_damaging(0.762) TCGA-77-8144-01 12 76425056 76425056 G C PHLDA1 Missense_Mutation p.L156V 0.21 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-77-8144-01 12 80266720 80266720 T C PPP1R12A Splice_Site p.X80_splice 0.20 TCGA-77-8144-01 12 81839360 81839360 T A PPFIA2 Missense_Mutation p.E182V 0.44 deleterious(0) possibly_damaging(0.745) TCGA-77-8144-01 12 9305806 9305806 A G PZP Missense_Mutation p.L1303P 0.35 deleterious(0) benign(0.001) TCGA-77-8144-01 13 111137261 111137261 G C COL4A2 Missense_Mutation p.G971A 0.57 possibly_damaging(0.628) TCGA-77-8144-01 13 21331591 21331591 T G N6AMT2 Intron 0.47 TCGA-77-8144-01 13 36878732 36878732 C A SPG20 Missense_Mutation p.V591L 0.58 tolerated(0.34) benign(0.016) TCGA-77-8144-01 13 36878733 36878733 C A SPG20 Silent p.A590A 0.57 TCGA-77-8144-01 14 100377786 100377787 - G EML1 Frame_Shift_Ins p.A477Gfs*3 0.29 TCGA-77-8144-01 14 100405604 100405604 G T EML1 Silent p.L773L 0.41 TCGA-77-8144-01 14 103418930 103418930 T C CDC42BPB Missense_Mutation p.H1026R 0.30 deleterious(0) possibly_damaging(0.534) TCGA-77-8144-01 14 106622164 106622164 C A IGHV3-16 Silent p.G27G 0.30 TCGA-77-8144-01 14 106805450 106805450 G T IGHV4-31 Missense_Mutation p.S38Y 0.35 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-77-8144-01 14 106993908 106993908 C A IGHV3-48 Missense_Mutation p.R86L 0.27 deleterious_low_confidence(0.01) benign(0.414) TCGA-77-8144-01 14 20482425 20482425 G C OR4K14 Missense_Mutation p.Q310E 0.33 tolerated_low_confidence(0.13) benign(0.034) TCGA-77-8144-01 14 21052062 21052062 C A RNASE11 Missense_Mutation p.S191I 0.33 deleterious(0) probably_damaging(0.999) TCGA-77-8144-01 14 22320914 22320914 C A TRAV8-3 Silent p.T24T 0.18 TCGA-77-8144-01 14 24606580 24606580 C T PSME1 Silent p.D62D 0.26 TCGA-77-8144-01 14 31354618 31354618 C T COCH Missense_Mutation p.T251I 0.44 tolerated(0.39) probably_damaging(0.909) TCGA-77-8144-01 14 34400359 34400359 G C EGLN3 Missense_Mutation p.N140K 0.32 deleterious(0) possibly_damaging(0.739) TCGA-77-8144-01 14 45542576 45542576 G T FAM179B Nonsense_Mutation p.G1659* 0.28 TCGA-77-8144-01 14 50081171 50081171 G C LRR1 Missense_Mutation p.C401S 0.26 deleterious(0) probably_damaging(0.999) TCGA-77-8144-01 14 52907294 52907294 C G TXNDC16 Missense_Mutation p.C664S 0.19 tolerated(0.11) benign(0.192) TCGA-77-8144-01 14 57736042 57736042 C T AP5M1 Missense_Mutation p.R4W 0.28 deleterious(0) probably_damaging(1) TCGA-77-8144-01 14 64464949 64464949 A G SYNE2 Missense_Mutation p.T1086A 0.26 benign(0.008) TCGA-77-8144-01 14 70634931 70634931 A G SLC8A3 Missense_Mutation p.L70P 0.34 tolerated(0.13) benign(0.303) TCGA-77-8144-01 14 73577544 73577544 A T RBM25 Missense_Mutation p.E566D 0.33 benign(0.217) TCGA-77-8144-01 14 79933577 79933577 C A NRXN3 Nonsense_Mutation p.Y719* 0.24 TCGA-77-8144-01 14 80669478 80669478 C A DIO2 Missense_Mutation p.V162F 0.30 deleterious(0.01) possibly_damaging(0.905) TCGA-77-8144-01 14 81864721 81864721 C A STON2 Silent p.T2T 0.43 TCGA-77-8144-01 14 95056413 95056414 - A SERPINA5 Frame_Shift_Ins p.E220Rfs*53 0.19 TCGA-77-8144-01 15 101887901 101887901 C T PCSK6 Intron 0.34 TCGA-77-8144-01 15 20644228 20644228 G T HERC2P3 RNA 0.20 TCGA-77-8144-01 15 20645803 20645803 G C HERC2P3 RNA 0.26 TCGA-77-8144-01 15 22382661 22382661 G T OR4N4 Silent p.L63L 0.27 TCGA-77-8144-01 15 25463890 25463890 C T SNORD115-28 5'Flank 0.34 TCGA-77-8144-01 15 25616618 25616618 C G UBE3A Missense_Mutation p.A238P 0.36 deleterious(0.05) possibly_damaging(0.786) TCGA-77-8144-01 15 28479324 28479324 T A HERC2 Silent p.T1370T 0.35 TCGA-77-8144-01 15 28518094 28518094 T A HERC2 Missense_Mutation p.Q286L 0.26 probably_damaging(0.977) TCGA-77-8144-01 15 42144474 42144474 G T SPTBN5 Missense_Mutation p.P3497H 0.22 possibly_damaging(0.794) TCGA-77-8144-01 15 43816202 43816202 C T MAP1A Missense_Mutation p.S844L 0.35 probably_damaging(0.998) TCGA-77-8144-01 15 44892816 44892816 G A SPG11 Missense_Mutation p.L1179F 0.41 tolerated(0.15) probably_damaging(0.934) TCGA-77-8144-01 15 45695211 45695211 A T SPATA5L1 Missense_Mutation p.Q195L 0.50 tolerated(0.1) benign(0) TCGA-77-8144-01 15 49329790 49329790 A T SECISBP2L Missense_Mutation p.N67K 0.33 deleterious_low_confidence(0.02) benign(0.281) TCGA-77-8144-01 15 57921977 57921977 A G GCOM1 Silent p.A201A 0.32 TCGA-77-8144-01 15 65502174 65502174 C A CILP 5'UTR 0.31 TCGA-77-8144-01 15 78839009 78839009 C T PSMA4 Silent p.T200T 0.21 TCGA-77-8144-01 15 85433766 85433766 G T SLC28A1 Splice_Site p.X93_splice 0.43 TCGA-77-8144-01 15 91810794 91810794 A G SV2B Missense_Mutation p.N377D 0.32 tolerated(0.06) benign(0.346) TCGA-77-8144-01 15 99456351 99456351 C G IGF1R Silent p.L556L 0.36 TCGA-77-8144-01 16 1592047 1592047 G T TMEM204 Nonsense_Mutation p.E136* 0.42 TCGA-77-8144-01 16 17451906 17451906 T A XYLT1 Missense_Mutation p.D122V 0.48 tolerated_low_confidence(0.21) benign(0.004) TCGA-77-8144-01 16 21261462 21261462 G A ANKS4B Missense_Mutation p.G192D 0.35 tolerated(0.56) benign(0.075) TCGA-77-8144-01 16 27237138 27237138 C T NSMCE1 Silent p.R210R 0.27 TCGA-77-8144-01 16 27761129 27761129 T C KIAA0556 Missense_Mutation p.S950P 0.33 tolerated(0.82) benign(0.002) TCGA-77-8144-01 16 28990481 28990481 C G SPNS1 Missense_Mutation p.F150L 0.31 tolerated(0.09) benign(0.403) TCGA-77-8144-01 16 29917117 29917117 G A ASPHD1 Missense_Mutation p.E358K 0.28 tolerated(0.11) benign(0.117) TCGA-77-8144-01 16 31368015 31368015 C A ITGAX Nonsense_Mutation p.Y71* 0.30 TCGA-77-8144-01 16 314956 314956 G - ITFG3 Frame_Shift_Del p.P533Qfs*81 0.27 TCGA-77-8144-01 16 48117647 48117647 T A ABCC12 Silent p.L1353L 0.34 TCGA-77-8144-01 16 57713092 57713092 C T GPR97 Missense_Mutation p.P166S 0.39 tolerated(0.15) benign(0.063) TCGA-77-8144-01 16 67189158 67189158 C T TRADD Missense_Mutation p.D157N 0.20 tolerated(0.12) benign(0.013) TCGA-77-8144-01 16 68266158 68266158 T C ESRP2 Missense_Mutation p.I330V 0.34 tolerated(0.55) probably_damaging(0.99) TCGA-77-8144-01 16 68732175 68732175 G T CDH3 Missense_Mutation p.D788Y 0.33 deleterious(0) probably_damaging(0.975) TCGA-77-8144-01 16 69202787 69202787 G A CIRH1A Missense_Mutation p.D670N 0.36 deleterious(0.02) possibly_damaging(0.776) TCGA-77-8144-01 16 71510053 71510053 G T ZNF19 Missense_Mutation p.R133S 0.37 tolerated(0.86) benign(0.001) TCGA-77-8144-01 16 71683194 71683194 T A PHLPP2 Missense_Mutation p.T1191S 0.30 tolerated(0.73) benign(0.001) TCGA-77-8144-01 16 72984556 72984556 G A ZFHX3 Nonsense_Mutation p.Q1010* 0.44 TCGA-77-8144-01 16 81954870 81954870 C T PLCG2 Missense_Mutation p.S768F 0.23 tolerated(0.09) benign(0.303) TCGA-77-8144-01 16 84163803 84163803 C T HSDL1 Missense_Mutation p.V152M 0.34 deleterious(0.03) benign(0.399) TCGA-77-8144-01 16 84216702 84216702 G A TAF1C Silent p.L154L 0.33 TCGA-77-8144-01 16 84228909 84228909 G A ADAD2 Silent p.P329P 0.34 TCGA-77-8144-01 16 88779799 88779799 A G CTU2 Missense_Mutation p.I273V 0.22 tolerated(0.77) benign(0.02) TCGA-77-8144-01 17 10317324 10317324 C G MYH8 Missense_Mutation p.E348Q 0.40 deleterious(0) probably_damaging(1) TCGA-77-8144-01 17 10363387 10363387 G C MYH4 Missense_Mutation p.A433G 0.32 deleterious(0.04) benign(0.327) TCGA-77-8144-01 17 10369894 10369894 C G MYH4 Missense_Mutation p.G57R 0.26 deleterious(0) possibly_damaging(0.623) TCGA-77-8144-01 17 10411813 10411813 G C MYH1 Silent p.T588T 0.30 TCGA-77-8144-01 17 11593134 11593134 T C DNAH9 Missense_Mutation p.M1332T 0.37 possibly_damaging(0.799) TCGA-77-8144-01 17 11622732 11622732 G T DNAH9 Missense_Mutation p.E1878D 0.25 probably_damaging(0.999) TCGA-77-8144-01 17 11833185 11833185 C T DNAH9 Silent p.N3960N 0.24 TCGA-77-8144-01 17 12666508 12666508 C T MYOCD Silent p.A836A 0.26 TCGA-77-8144-01 17 17700929 17700929 G T RAI1 Missense_Mutation p.R1556L 0.33 deleterious(0) benign(0.343) TCGA-77-8144-01 17 2323655 2323655 C A METTL16 Missense_Mutation p.G433V 0.43 tolerated_low_confidence(0.1) benign(0.002) TCGA-77-8144-01 17 27889791 27889791 G A ABHD15 Missense_Mutation p.P399S 0.49 tolerated(0.64) benign(0.038) TCGA-77-8144-01 17 34185903 34185903 G T C17orf66 Missense_Mutation p.Q310K 0.25 tolerated(0.2) possibly_damaging(0.556) TCGA-77-8144-01 17 34247203 34247203 G T RDM1 Missense_Mutation p.H247Q 0.43 tolerated(1) benign(0.002) TCGA-77-8144-01 17 35413906 35413906 A T AATF Missense_Mutation p.E542V 0.23 deleterious(0.04) possibly_damaging(0.865) TCGA-77-8144-01 17 36864036 36864036 G C MLLT6 Missense_Mutation p.A89P 0.32 deleterious(0.02) unknown(0) TCGA-77-8144-01 17 39411939 39411939 G T KRTAP9-9 Missense_Mutation p.G101V 0.45 tolerated(0.06) unknown(0) TCGA-77-8144-01 17 3989005 3989005 G C ZZEF1 Missense_Mutation p.P869A 0.33 deleterious(0) probably_damaging(0.999) TCGA-77-8144-01 17 45668140 45668140 T C NPEPPS Missense_Mutation p.C385R 0.10 deleterious(0.04) benign(0.337) TCGA-77-8144-01 17 46620530 46620530 G T HOXB2 Missense_Mutation p.P324H 0.23 deleterious(0) possibly_damaging(0.75) TCGA-77-8144-01 17 48195602 48195602 G A SAMD14 Missense_Mutation p.R45W 0.32 deleterious(0) probably_damaging(1) TCGA-77-8144-01 17 48614348 48614348 G T EPN3 Missense_Mutation p.R144L 0.16 deleterious(0) probably_damaging(0.999) TCGA-77-8144-01 17 49350805 49350805 C T UTP18 Silent p.I235I 0.13 TCGA-77-8144-01 17 56435904 56435904 G A RNF43 Silent p.P411P 0.27 TCGA-77-8144-01 17 61432482 61432482 C T TANC2 Silent p.T697T 0.26 TCGA-77-8144-01 17 62290228 62290228 C A TEX2 Silent p.A450A 0.15 TCGA-77-8144-01 17 64222154 64222154 A G APOH Silent p.C110C 0.18 TCGA-77-8144-01 17 7251685 7251685 G A ACAP1 Silent p.L523L 0.16 TCGA-77-8144-01 17 72541070 72541070 G T CD300C Missense_Mutation p.S26R 0.10 tolerated(0.39) benign(0.044) TCGA-77-8144-01 17 7460699 7460699 C A TNFSF12 Intron 0.36 TCGA-77-8144-01 17 7559097 7559097 C T ATP1B2 Missense_Mutation p.P253S 0.27 tolerated(0.75) benign(0.124) TCGA-77-8144-01 17 7577058 7577058 C A TP53 Nonsense_Mutation p.E294* 0.36 TCGA-77-8144-01 17 7578208 7578208 T C TP53 Missense_Mutation p.H214R 0.39 deleterious(0.02) probably_damaging(0.922) TCGA-77-8144-01 17 76495121 76495121 G A DNAH17 Missense_Mutation p.S1891L 0.23 benign(0.045) TCGA-77-8144-01 17 76968462 76968462 C T LGALS3BP Silent p.E318E 0.14 TCGA-77-8144-01 17 78185818 78185818 C A SGSH Intron 0.10 TCGA-77-8144-01 17 78210862 78210862 C T SLC26A11 Missense_Mutation p.T291I 0.12 tolerated(0.1) benign(0.088) TCGA-77-8144-01 17 80059544 80059544 G C FASN 5'Flank 0.49 TCGA-77-8144-01 18 12325509 12325509 C T TUBB6 Missense_Mutation p.R241C 0.58 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-77-8144-01 18 14513692 14513692 A G POTEC Missense_Mutation p.I501T 0.40 tolerated(0.13) benign(0.001) TCGA-77-8144-01 18 43675098 43675098 C A ATP5A1 Splice_Site p.X21_splice 0.23 TCGA-77-8144-01 18 55238736 55238736 G A FECH Silent p.P123P 0.24 TCGA-77-8144-01 18 6093440 6093440 C G L3MBTL4 Missense_Mutation p.L429F 0.76 tolerated(0.11) benign(0.002) TCGA-77-8144-01 18 64235653 64235653 C T CDH19 Missense_Mutation p.G164R 0.34 deleterious(0.02) probably_damaging(0.984) TCGA-77-8144-01 18 67425097 67425097 T C DOK6 Missense_Mutation p.Y282H 0.32 tolerated(0.18) possibly_damaging(0.707) TCGA-77-8144-01 18 7032144 7032144 C T LAMA1 Missense_Mutation p.G732E 0.65 deleterious(0) probably_damaging(0.991) TCGA-77-8144-01 19 10664851 10664851 G C KRI1 Missense_Mutation p.P636A 0.38 tolerated(0.42) benign(0.08) TCGA-77-8144-01 19 10823291 10823291 C T QTRT1 Missense_Mutation p.P283L 0.41 deleterious(0) probably_damaging(1) TCGA-77-8144-01 19 12576078 12576078 C T ZNF709 Missense_Mutation p.G220R 0.09 deleterious(0.01) probably_damaging(1) TCGA-77-8144-01 19 12903272 12903272 G T JUNB Missense_Mutation p.Q229H 0.38 tolerated(0.45) possibly_damaging(0.638) TCGA-77-8144-01 19 12903273 12903273 C T JUNB Silent p.L230L 0.38 TCGA-77-8144-01 19 15079269 15079269 C A SLC1A6 Missense_Mutation p.A132S 0.33 tolerated(0.07) benign(0.009) TCGA-77-8144-01 19 15083613 15083613 G C SLC1A6 Missense_Mutation p.T37R 0.25 tolerated(0.06) benign(0.327) TCGA-77-8144-01 19 15278182 15278182 C A NOTCH3 Missense_Mutation p.C1747F 0.40 tolerated(0.66) probably_damaging(0.909) TCGA-77-8144-01 19 18377130 18377130 G A KIAA1683 Missense_Mutation p.P407L 0.17 deleterious(0.05) benign(0.024) TCGA-77-8144-01 19 2252504 2252504 G A JSRP1 Missense_Mutation p.R274W 0.43 deleterious(0) probably_damaging(0.942) TCGA-77-8144-01 19 33106630 33106630 G A ANKRD27 Silent p.V703V 0.46 TCGA-77-8144-01 19 36851348 36851348 C T ZFP14 Missense_Mutation p.R75K 0.28 tolerated(0.66) benign(0) TCGA-77-8144-01 19 39001304 39001304 T A RYR1 Missense_Mutation p.L3002Q 0.36 benign(0.193) TCGA-77-8144-01 19 39362293 39362293 G T RINL Missense_Mutation p.H149N 0.17 tolerated(0.2) benign(0.006) TCGA-77-8144-01 19 40718818 40718818 G A MAP3K10 Silent p.K553K 0.31 TCGA-77-8144-01 19 43092954 43092954 T C CEACAM8 Missense_Mutation p.R314G 0.44 deleterious(0) benign(0.21) TCGA-77-8144-01 19 45899647 45899647 C A PPP1R13L Missense_Mutation p.D254Y 0.42 deleterious(0) possibly_damaging(0.677) TCGA-77-8144-01 19 46216167 46216167 G A FBXO46 Missense_Mutation p.P196L 0.59 deleterious(0) possibly_damaging(0.87) TCGA-77-8144-01 19 47127045 47127045 G C PTGIR Missense_Mutation p.F146L 0.15 tolerated(0.18) benign(0.267) TCGA-77-8144-01 19 48339526 48339526 C A CRX Missense_Mutation p.R43S 0.25 deleterious(0) probably_damaging(1) TCGA-77-8144-01 19 4891243 4891243 T G ARRDC5 Missense_Mutation p.S282R 0.23 tolerated(0.3) benign(0.008) TCGA-77-8144-01 19 50657932 50657932 G T IZUMO2 Missense_Mutation p.P183Q 0.18 tolerated(0.42) benign(0) TCGA-77-8144-01 19 54823363 54823363 C - LILRA5 Frame_Shift_Del p.N61Tfs*3 0.18 TCGA-77-8144-01 19 55594873 55594873 C T EPS8L1 Missense_Mutation p.R448W 0.25 deleterious(0.01) possibly_damaging(0.898) TCGA-77-8144-01 19 56321635 56321635 C T NLRP11 Missense_Mutation p.G114E 0.10 tolerated(1) benign(0.01) TCGA-77-8144-01 19 56466964 56466964 T A NLRP8 Missense_Mutation p.F514I 0.42 deleterious(0.01) possibly_damaging(0.814) TCGA-77-8144-01 19 56704095 56704095 C A ZSCAN5B Silent p.V109V 0.19 TCGA-77-8144-01 19 57326777 57326777 G T PEG3 Silent p.A1011A 0.43 TCGA-77-8144-01 19 5788142 5788142 C A DUS3L Missense_Mutation p.D330Y 0.25 deleterious(0) probably_damaging(1) TCGA-77-8144-01 19 58067812 58067812 G C ZNF550 5'Flank 0.09 TCGA-77-8144-01 19 58549348 58549348 G A ZSCAN1 Silent p.V48V 0.25 TCGA-77-8144-01 19 58579680 58579680 G C ZNF135 Missense_Mutation p.D634H 0.18 deleterious(0.02) benign(0.026) TCGA-77-8144-01 19 618560 618560 T A POLRMT Missense_Mutation p.N1117I 0.36 deleterious(0) probably_damaging(0.997) TCGA-77-8144-01 19 648885 648885 C T RNF126 Missense_Mutation p.V223I 0.21 deleterious(0.03) benign(0.244) TCGA-77-8144-01 19 6887599 6887599 G T EMR1 5'UTR 0.33 TCGA-77-8144-01 19 8966711 8966711 C T MUC16 Missense_Mutation p.M14414I 0.61 possibly_damaging(0.762) TCGA-77-8144-01 1 110213942 110213942 C T GSTM2 Missense_Mutation p.P132S 0.28 deleterious(0.02) benign(0.102) TCGA-77-8144-01 1 114246728 114246729 - A PHTF1 Frame_Shift_Ins p.S622Ffs*15 0.26 TCGA-77-8144-01 1 114500755 114500755 C G HIPK1 Nonsense_Mutation p.S608* 0.11 TCGA-77-8144-01 1 116675776 116675776 G T MAB21L3 Missense_Mutation p.E293D 0.29 deleterious(0.02) probably_damaging(0.951) TCGA-77-8144-01 1 11735197 11735197 A G MAD2L2 Missense_Mutation p.V179A 0.60 tolerated(0.09) benign(0.116) TCGA-77-8144-01 1 1277136 1277136 C - DVL1 Frame_Shift_Del p.L173Cfs*68 0.44 TCGA-77-8144-01 1 145075804 145075804 C T PDE4DIP Missense_Mutation p.C20Y 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.588) TCGA-77-8144-01 1 150531879 150531879 T C ADAMTSL4 Silent p.P960P 0.41 TCGA-77-8144-01 1 153431375 153431375 T A S100A7 Missense_Mutation p.N39Y 0.39 deleterious(0) probably_damaging(0.992) TCGA-77-8144-01 1 154296839 154296839 G T AQP10 Missense_Mutation p.L263F 0.33 tolerated(0.51) benign(0.011) TCGA-77-8144-01 1 154794607 154794607 G T KCNN3 Silent p.I329I 0.40 TCGA-77-8144-01 1 155451086 155451086 T C ASH1L Silent p.V525V 0.32 TCGA-77-8144-01 1 156503857 156503857 C T IQGAP3 Missense_Mutation p.A1273T 0.30 tolerated(1) benign(0.097) TCGA-77-8144-01 1 157509004 157509004 G C FCRL5 Missense_Mutation p.S425W 0.28 deleterious(0.04) probably_damaging(0.989) TCGA-77-8144-01 1 158298020 158298020 G T CD1B 3'UTR 0.38 TCGA-77-8144-01 1 158646019 158646019 G T SPTA1 Missense_Mutation p.Q342K 0.33 tolerated(0.27) benign(0.03) TCGA-77-8144-01 1 159785365 159785365 C A FCRL6 Missense_Mutation p.P407T 0.27 tolerated(0.19) benign(0.021) TCGA-77-8144-01 1 160160478 160160478 G T CASQ1 5'UTR 0.38 TCGA-77-8144-01 1 161192103 161192103 G A AL590714.1 Missense_Mutation p.C13Y 0.33 possibly_damaging(0.598) TCGA-77-8144-01 1 161512715 161512715 G C FCGR3A 3'UTR 0.16 TCGA-77-8144-01 1 168269676 168269676 G C TBX19 Missense_Mutation p.V228L 0.33 tolerated(0.58) benign(0.003) TCGA-77-8144-01 1 169698701 169698701 C G SELE Missense_Mutation p.E277Q 0.30 tolerated(0.48) possibly_damaging(0.616) TCGA-77-8144-01 1 175323645 175323645 A T TNR Missense_Mutation p.D1088E 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-77-8144-01 1 176833363 176833363 G A ASTN1 3'UTR 0.08 TCGA-77-8144-01 1 176845698 176845698 G - ASTN1 Frame_Shift_Del p.V1147Wfs*10 0.23 TCGA-77-8144-01 1 176918431 176918431 G A ASTN1 Silent p.I648I 0.34 TCGA-77-8144-01 1 182369163 182369163 A C TEDDM1 Missense_Mutation p.M153R 0.27 tolerated(0.5) possibly_damaging(0.499) TCGA-77-8144-01 1 182555636 182555636 C T RNASEL Silent p.A102A 0.23 TCGA-77-8144-01 1 183103897 183103897 G A LAMC1 Missense_Mutation p.E1318K 0.37 tolerated(0.32) probably_damaging(0.997) TCGA-77-8144-01 1 186301360 186301360 C T TPR Silent p.K1857K 0.24 TCGA-77-8144-01 1 19563712 19563712 C A EMC1 Missense_Mutation p.L411F 0.55 deleterious(0.03) possibly_damaging(0.786) TCGA-77-8144-01 1 196971730 196971730 A G CFHR5 Silent p.L422L 0.29 TCGA-77-8144-01 1 197403945 197403945 T C CRB1 Silent p.D984D 0.43 TCGA-77-8144-01 1 200619672 200619672 G A DDX59 Silent p.L399L 0.42 TCGA-77-8144-01 1 202272450 202272450 A T LGR6 Nonsense_Mutation p.K325* 0.29 TCGA-77-8144-01 1 204945800 204945800 A T NFASC Missense_Mutation p.M570L 0.37 tolerated(0.42) benign(0.011) TCGA-77-8144-01 1 206944255 206944255 G A IL10 Silent p.R125R 0.37 TCGA-77-8144-01 1 207241654 207241654 T G PFKFB2 Silent p.A329A 0.28 TCGA-77-8144-01 1 212190253 212190253 C A INTS7 Missense_Mutation p.A162S 0.31 tolerated(0.07) possibly_damaging(0.833) TCGA-77-8144-01 1 214185058 214185058 G T PROX1 Missense_Mutation p.E676D 0.31 deleterious(0.03) probably_damaging(0.942) TCGA-77-8144-01 1 216850456 216850456 C T ESRRG Missense_Mutation p.C150Y 0.37 deleterious(0.03) probably_damaging(0.998) TCGA-77-8144-01 1 228509900 228509900 C T OBSCN Silent p.L6077L 0.36 TCGA-77-8144-01 1 237023211 237023211 G T MTR Missense_Mutation p.A678S 0.23 tolerated(0.16) benign(0.238) TCGA-77-8144-01 1 237791379 237791379 G - RYR2 Frame_Shift_Del 0.33 TCGA-77-8144-01 1 237947928 237947928 T A RYR2 Missense_Mutation p.F4306I 0.28 benign(0.05) TCGA-77-8144-01 1 240256932 240256932 C T FMN2 Missense_Mutation p.A508V 0.36 unknown(0) TCGA-77-8144-01 1 242287775 242287775 C G PLD5 Missense_Mutation p.V310L 0.24 tolerated(0.79) possibly_damaging(0.583) TCGA-77-8144-01 1 247921568 247921568 C A OR1C1 Silent p.A47A 0.34 TCGA-77-8144-01 1 248085050 248085050 C A OR2T8 Missense_Mutation p.A244D 0.29 deleterious(0.02) possibly_damaging(0.783) TCGA-77-8144-01 1 248308798 248308798 G A OR2M5 Missense_Mutation p.V117I 0.29 tolerated(0.15) benign(0.013) TCGA-77-8144-01 1 248436386 248436386 G T OR2T33 Missense_Mutation p.A244D 0.12 deleterious(0.02) possibly_damaging(0.836) TCGA-77-8144-01 1 32145085 32145085 C T COL16A1 Intron 0.22 TCGA-77-8144-01 1 38397428 38397428 C T INPP5B Intron 0.35 TCGA-77-8144-01 1 44456039 44456060 CTTGGAGGTGTCTCGGCAACCA - B4GALT2 Frame_Shift_Del p.L376Sfs*? 0.35 TCGA-77-8144-01 1 47610609 47610609 G T CYP4A22 Missense_Mutation p.V397F 0.30 deleterious(0) possibly_damaging(0.852) TCGA-77-8144-01 1 57480842 57480842 G T DAB1 Silent p.P386P 0.31 TCGA-77-8144-01 1 57491654 57491654 G - DAB1 Frame_Shift_Del p.T263Lfs*70 0.28 TCGA-77-8144-01 1 63877676 63877676 G T ALG6 Nonsense_Mutation p.E254* 0.30 TCGA-77-8144-01 1 65243366 65243366 A G RAVER2 Missense_Mutation p.Y126C 0.47 tolerated(0.16) probably_damaging(0.917) TCGA-77-8144-01 1 70716506 70716506 G T SRSF11 3'UTR 0.24 TCGA-77-8144-01 1 78044541 78044541 A G ZZZ3 Missense_Mutation p.V699A 0.39 deleterious(0.01) possibly_damaging(0.672) TCGA-77-8144-01 1 90400589 90400589 T A LRRC8D Silent p.I654I 0.38 TCGA-77-8144-01 1 905800 905800 C A PLEKHN1 Missense_Mutation p.S109R 0.54 deleterious(0.04) probably_damaging(0.991) TCGA-77-8144-01 20 23967253 23967253 C A GGTLC1 5'UTR 0.44 TCGA-77-8144-01 20 32677565 32677565 G A EIF2S2 Nonsense_Mutation p.R325* 0.36 TCGA-77-8144-01 20 37214762 37214762 G T ADIG Missense_Mutation p.G72V 0.33 deleterious(0) benign(0.103) TCGA-77-8144-01 20 42680151 42680151 C A TOX2 Missense_Mutation p.S206Y 0.27 deleterious(0) probably_damaging(0.994) TCGA-77-8144-01 20 54956507 54956507 A T AURKA Missense_Mutation p.D229E 0.18 deleterious(0.03) possibly_damaging(0.762) TCGA-77-8144-01 20 62599271 62599271 C T ZNF512B Silent p.R11R 0.33 TCGA-77-8144-01 21 15558314 15558314 T A LIPI Missense_Mutation p.K191M 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-77-8144-01 21 22664467 22664467 C T NCAM2 Silent p.N175N 0.27 TCGA-77-8144-01 21 33346923 33346923 G T HUNK Missense_Mutation p.G356V 0.33 deleterious(0) probably_damaging(0.99) TCGA-77-8144-01 21 43809163 43809163 A G TMPRSS3 Intron 0.06 TCGA-77-8144-01 21 45950961 45950961 C T TSPEAR Missense_Mutation p.V200I 0.27 tolerated(1) benign(0.001) TCGA-77-8144-01 21 47417377 47417377 G T COL6A1 Nonsense_Mutation p.E481* 0.42 TCGA-77-8144-01 22 18022454 18022454 G A CECR2 Silent p.Q853Q 0.38 TCGA-77-8144-01 22 21336814 21336814 C A LZTR1 Missense_Mutation p.H52N 0.19 tolerated(0.07) benign(0.064) TCGA-77-8144-01 22 21336815 21336815 A T LZTR1 Missense_Mutation p.H52L 0.21 deleterious(0) possibly_damaging(0.646) TCGA-77-8144-01 22 29706535 29706535 G T GAS2L1 Missense_Mutation p.R247L 0.37 deleterious(0) probably_damaging(0.983) TCGA-77-8144-01 22 35660957 35660957 G C HMGXB4 Missense_Mutation p.M192I 0.32 deleterious(0.01) possibly_damaging(0.84) TCGA-77-8144-01 22 36003447 36003447 G C MB Missense_Mutation p.P121R 0.45 tolerated(0.06) benign(0.315) TCGA-77-8144-01 22 36900365 36900365 C A FOXRED2 Missense_Mutation p.G277W 0.29 deleterious(0) probably_damaging(0.999) TCGA-77-8144-01 22 38120139 38120139 C T TRIOBP Missense_Mutation p.P526S 0.15 deleterious_low_confidence(0.05) possibly_damaging(0.641) TCGA-77-8144-01 22 40696476 40696476 C G TNRC6B Silent p.L1242L 0.35 TCGA-77-8144-01 2 107459508 107459508 G T ST6GAL2 Missense_Mutation p.S309Y 0.13 probably_damaging(0.989) TCGA-77-8144-01 2 116594142 116594142 G T DPP10 Splice_Site p.X707_splice 0.37 TCGA-77-8144-01 2 122165225 122165225 C A CLASP1 Missense_Mutation p.A831S 0.37 deleterious(0.04) benign(0.125) TCGA-77-8144-01 2 135630107 135630107 C A ACMSD Missense_Mutation p.Q249K 0.29 tolerated(0.46) benign(0.002) TCGA-77-8144-01 2 160604973 160604973 G C MARCH7 Missense_Mutation p.R391T 0.46 deleterious(0) probably_damaging(0.992) TCGA-77-8144-01 2 162930531 162930531 C A DPP4 5'UTR 0.28 TCGA-77-8144-01 2 163005663 163005663 C A GCG Missense_Mutation p.G9V 0.34 deleterious(0) probably_damaging(0.947) TCGA-77-8144-01 2 168103271 168103271 T C XIRP2 Missense_Mutation p.L1790P 0.37 probably_damaging(0.979) TCGA-77-8144-01 2 169938207 169938207 C T DHRS9 Missense_Mutation p.S39L 0.41 deleterious(0) possibly_damaging(0.745) TCGA-77-8144-01 2 170471233 170471233 A C PPIG Missense_Mutation p.K182N 0.46 deleterious(0.02) unknown(0) TCGA-77-8144-01 2 179577499 179577499 G C TTN Missense_Mutation p.Q9085E 0.24 TCGA-77-8144-01 2 179605141 179605141 C G TTN Missense_Mutation p.E4273D 0.23 TCGA-77-8144-01 2 179640632 179640632 G T TTN Missense_Mutation p.H1987N 0.34 TCGA-77-8144-01 2 180310332 180310332 G T ZNF385B Missense_Mutation p.T347K 0.30 deleterious(0.04) probably_damaging(0.999) TCGA-77-8144-01 2 180409670 180409670 G T ZNF385B Missense_Mutation p.P94T 0.32 tolerated(0.17) benign(0.23) TCGA-77-8144-01 2 185803595 185803595 G T ZNF804A Missense_Mutation p.G1158W 0.33 deleterious(0) probably_damaging(0.999) TCGA-77-8144-01 2 187511484 187511484 A G ITGAV Missense_Mutation p.T411A 0.40 tolerated(0.6) benign(0.003) TCGA-77-8144-01 2 198636598 198636598 G T BOLL Nonsense_Mutation p.S166* 0.48 TCGA-77-8144-01 2 210558262 210558262 G T MAP2 Silent p.V456V 0.28 TCGA-77-8144-01 2 21252544 21252544 G T APOB Silent p.I528I 0.23 TCGA-77-8144-01 2 216248160 216248160 G T FN1 Missense_Mutation p.N1647K 0.35 deleterious(0.02) benign(0.445) TCGA-77-8144-01 2 216296607 216296607 C G FN1 Missense_Mutation p.E166Q 0.34 deleterious(0.03) probably_damaging(0.999) TCGA-77-8144-01 2 220154898 220154898 C A PTPRN 3'UTR 0.27 TCGA-77-8144-01 2 234526674 234526674 T C UGT1A8 Silent p.S107S 0.16 TCGA-77-8144-01 2 239176743 239176743 C A PER2 Missense_Mutation p.Q307H 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-77-8144-01 2 239176744 239176744 T A PER2 Missense_Mutation p.Q307L 0.15 deleterious(0) probably_damaging(0.996) TCGA-77-8144-01 2 240969073 240969073 C A OR6B2 Missense_Mutation p.M258I 0.35 tolerated(0.64) benign(0.019) TCGA-77-8144-01 2 30985953 30985953 C A CAPN13 Nonsense_Mutation p.E257* 0.31 TCGA-77-8144-01 2 32429657 32429657 A T SLC30A6 Splice_Site p.X262_splice 0.32 TCGA-77-8144-01 2 54858661 54858661 G A SPTBN1 Silent p.E1159E 0.37 TCGA-77-8144-01 2 71163029 71163029 C G ATP6V1B1 5'UTR 0.44 TCGA-77-8144-01 2 73716934 73716934 G T ALMS1 Silent p.R2615R 0.29 TCGA-77-8144-01 2 73718044 73718044 C A ALMS1 Silent p.P2985P 0.28 TCGA-77-8144-01 2 79348705 79348705 G T REG1A Nonsense_Mutation p.E28* 0.34 TCGA-77-8144-01 2 79350045 79350045 C A REG1A Missense_Mutation p.P134T 0.26 tolerated(0.16) probably_damaging(0.91) TCGA-77-8144-01 2 80831306 80831306 T A CTNNA2 Splice_Site p.X765_splice 0.27 TCGA-77-8144-01 2 96652661 96652661 C A ANKRD36C Silent p.L108L 0.42 TCGA-77-8144-01 3 107766037 107766037 C A CD47 3'UTR 0.42 TCGA-77-8144-01 3 113207801 113207801 T C SPICE1 Missense_Mutation p.N201S 0.32 tolerated(0.26) benign(0.015) TCGA-77-8144-01 3 121975960 121975960 C T CASR Missense_Mutation p.A73V 0.41 deleterious(0.03) probably_damaging(0.989) TCGA-77-8144-01 3 148876540 148876540 G T HPS3 Missense_Mutation p.W593C 0.28 tolerated(0.18) benign(0.394) TCGA-77-8144-01 3 149051118 149051118 C A TM4SF18 Missense_Mutation p.A18S 0.24 tolerated(0.09) probably_damaging(0.982) TCGA-77-8144-01 3 150387087 150387087 C A FAM194A Missense_Mutation p.V499F 0.17 deleterious(0) probably_damaging(0.984) TCGA-77-8144-01 3 151475336 151475336 T C AADACL2 Missense_Mutation p.L387P 0.27 tolerated(0.2) possibly_damaging(0.781) TCGA-77-8144-01 3 154055542 154055542 G T GPR149 Silent p.I714I 0.10 TCGA-77-8144-01 3 169539962 169539962 A G LRRIQ4 Missense_Mutation p.S85G 0.15 tolerated(0.35) benign(0.006) TCGA-77-8144-01 3 180372608 180372608 A G CCDC39 Missense_Mutation p.L291S 0.46 tolerated(0.21) benign(0.013) TCGA-77-8144-01 3 180378359 180378359 C A CCDC39 Missense_Mutation p.R172M 0.44 tolerated(0.06) benign(0.219) TCGA-77-8144-01 3 195516165 195516165 G A MUC4 Silent p.T762T 0.32 TCGA-77-8144-01 3 30729891 30729901 AGCCTCCATTT - TGFBR2 Frame_Shift_Del p.E496Gfs*41 0.30 TCGA-77-8144-01 3 46009166 46009166 C A FYCO1 Nonsense_Mutation p.E554* 0.48 TCGA-77-8144-01 3 47618644 47618644 C T CSPG5 Missense_Mutation p.G291D 0.47 tolerated_low_confidence(0.11) benign(0.021) TCGA-77-8144-01 3 48419965 48419965 G T FBXW12 Missense_Mutation p.Q188H 0.40 tolerated(0.55) benign(0.014) TCGA-77-8144-01 3 58178456 58178456 T A DNASE1L3 Missense_Mutation p.K292N 0.45 deleterious(0) possibly_damaging(0.535) TCGA-77-8144-01 3 97852364 97852364 C A OR5H1 Missense_Mutation p.P275T 0.32 deleterious(0.01) benign(0.027) TCGA-77-8144-01 4 123314762 123314762 C A ADAD1 Missense_Mutation p.A183E 0.24 tolerated(0.33) benign(0.005) TCGA-77-8144-01 4 125591396 125591396 C A ANKRD50 Missense_Mutation p.K1012N 0.55 tolerated(0.3) benign(0.03) TCGA-77-8144-01 4 141583197 141583197 C A TBC1D9 Silent p.G551G 0.08 TCGA-77-8144-01 4 146576365 146576365 C G MMAA Missense_Mutation p.Q346E 0.43 tolerated(0.06) benign(0.063) TCGA-77-8144-01 4 149356635 149356635 A T NR3C2 Missense_Mutation p.F460I 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.587) TCGA-77-8144-01 4 156135352 156135352 T C NPY2R Silent p.F87F 0.49 TCGA-77-8144-01 4 165962613 165962613 C A TRIM60 Silent p.I463I 0.31 TCGA-77-8144-01 4 177083234 177083234 A T WDR17 Missense_Mutation p.H944L 0.62 tolerated(0.07) benign(0.066) TCGA-77-8144-01 4 187549401 187549401 C A FAT1 Nonsense_Mutation p.E1573* 0.32 TCGA-77-8144-01 4 23830084 23830084 G T PPARGC1A Missense_Mutation p.S232R 0.34 tolerated(0.14) benign(0.043) TCGA-77-8144-01 4 25260797 25260797 A G PI4K2B Missense_Mutation p.I299V 0.29 tolerated(0.14) benign(0.03) TCGA-77-8144-01 4 25678437 25678437 A G SLC34A2 3'UTR 0.21 TCGA-77-8144-01 4 37863248 37863248 G T PGM2 3'UTR 0.53 TCGA-77-8144-01 4 40122243 40122243 G T N4BP2 Missense_Mutation p.V838F 0.12 tolerated(0.16) benign(0.099) TCGA-77-8144-01 4 40434666 40434666 A G RBM47 Splice_Site p.X514_splice 0.46 TCGA-77-8144-01 4 46060580 46060580 C A GABRG1 Missense_Mutation p.D229Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-77-8144-01 4 54231652 54231652 C G SCFD2 Missense_Mutation p.V153L 0.29 deleterious(0.01) probably_damaging(0.99) TCGA-77-8144-01 4 57182507 57182507 G A KIAA1211 Missense_Mutation p.E947K 0.21 tolerated(0.52) benign(0.031) TCGA-77-8144-01 4 62813870 62813870 G A LPHN3 Missense_Mutation p.R826H 0.44 tolerated(0.08) benign(0.02) TCGA-77-8144-01 4 71588310 71588310 C T RUFY3 Missense_Mutation p.P7L 0.21 deleterious_low_confidence(0.03) benign(0.162) TCGA-77-8144-01 4 72316938 72316938 G A SLC4A4 Silent p.Q414Q 0.16 TCGA-77-8144-01 4 73013365 73013365 G A NPFFR2 Missense_Mutation p.A469T 0.11 tolerated(0.14) benign(0.013) TCGA-77-8144-01 5 114473246 114473246 T A TRIM36 Missense_Mutation p.E312V 0.72 deleterious(0.02) possibly_damaging(0.796) TCGA-77-8144-01 5 114916491 114916491 T A TMED7-TICAM2 Missense_Mutation p.T324S 0.68 tolerated_low_confidence(0.19) benign(0.021) TCGA-77-8144-01 5 133914523 133914523 G C JADE2 Missense_Mutation p.G630A 0.69 tolerated(0.88) benign(0.001) TCGA-77-8144-01 5 140718546 140718546 C T PCDHGA2 Missense_Mutation p.A3V 0.77 tolerated_low_confidence(0.08) benign(0.003) TCGA-77-8144-01 5 140736678 140736678 G C PCDHGA4 Silent p.A637A 0.64 TCGA-77-8144-01 5 141016394 141016394 C A HDAC3 5'UTR 0.75 TCGA-77-8144-01 5 141019222 141019222 G A RELL2 Intron 0.73 TCGA-77-8144-01 5 147928320 147928320 A T HTR4 Nonsense_Mutation p.Y88* 0.68 TCGA-77-8144-01 5 150310993 150310993 C A ZNF300P1 RNA 0.77 TCGA-77-8144-01 5 156590085 156590085 G T FAM71B Silent p.P397P 0.74 TCGA-77-8144-01 5 160047600 160047600 C A ATP10B Nonsense_Mutation p.E724* 0.10 TCGA-77-8144-01 5 160047777 160047777 C T ATP10B Missense_Mutation p.D665N 0.12 tolerated(0.26) benign(0.082) TCGA-77-8144-01 5 161113302 161113302 C A GABRA6 Silent p.I35I 0.66 TCGA-77-8144-01 5 169805714 169805714 C T KCNMB1 Silent p.Q190Q 0.67 TCGA-77-8144-01 5 180048145 180048145 C T FLT4 Missense_Mutation p.V710M 0.16 tolerated(0.27) benign(0.027) TCGA-77-8144-01 5 76012501 76012501 G T F2R Intron 0.70 TCGA-77-8144-01 6 102337662 102337662 C T GRIK2 Missense_Mutation p.P558S 0.33 deleterious(0) probably_damaging(0.999) TCGA-77-8144-01 6 108492736 108492736 G A NR2E1 Missense_Mutation p.D34N 0.23 tolerated(0.25) probably_damaging(1) TCGA-77-8144-01 6 11213771 11213771 G C NEDD9 Missense_Mutation p.Q68E 0.39 tolerated(0.28) benign(0.018) TCGA-77-8144-01 6 114277816 114277816 C G HDAC2 Missense_Mutation p.E109Q 0.31 deleterious(0.02) benign(0.213) TCGA-77-8144-01 6 148840711 148840711 G T SASH1 Silent p.S297S 0.17 TCGA-77-8144-01 6 152623052 152623052 C A SYNE1 Silent p.L5831L 0.52 TCGA-77-8144-01 6 152650927 152650927 G C SYNE1 Missense_Mutation p.H4965D 0.41 benign(0) TCGA-77-8144-01 6 157222590 157222590 G T ARID1B Missense_Mutation p.Q619H 0.23 possibly_damaging(0.844) TCGA-77-8144-01 6 160670351 160670351 C A SLC22A2 Missense_Mutation p.V247F 0.32 tolerated(0.14) benign(0.151) TCGA-77-8144-01 6 167343145 167343145 C T RNASET2 Silent p.E234E 0.24 TCGA-77-8144-01 6 26156559 26156560 - GTT HIST1H1E 5'UTR 0.26 TCGA-77-8144-01 6 27420992 27420992 T A ZNF184 Missense_Mutation p.I116F 0.42 tolerated(0.26) benign(0.001) TCGA-77-8144-01 6 28403867 28403867 G T ZSCAN23 Silent p.S59S 0.46 TCGA-77-8144-01 6 29691573 29691573 C G HLA-F Missense_Mutation p.P68R 0.50 deleterious_low_confidence(0.02) possibly_damaging(0.563) TCGA-77-8144-01 6 31749496 31749496 G A VARS Missense_Mutation p.P797L 0.25 deleterious(0) probably_damaging(0.999) TCGA-77-8144-01 6 31842730 31842730 G A SLC44A4 Silent p.N106N 0.35 TCGA-77-8144-01 6 41889421 41889421 G C BYSL Missense_Mutation p.G41R 0.38 tolerated(0.55) benign(0.001) TCGA-77-8144-01 6 43305908 43305908 T C ZNF318 Missense_Mutation p.E1943G 0.46 benign(0.154) TCGA-77-8144-01 6 46802400 46802400 G C MEP1A Missense_Mutation p.L565F 0.34 tolerated(0.43) benign(0.001) TCGA-77-8144-01 6 51890263 51890263 C G PKHD1 Missense_Mutation p.G1449R 0.40 deleterious(0.01) possibly_damaging(0.878) TCGA-77-8144-01 6 6222319 6222319 G - F13A1 Frame_Shift_Del p.F354Sfs*8 0.34 TCGA-77-8144-01 6 63995580 63995580 G T LGSN Missense_Mutation p.A81D 0.34 tolerated(0.11) benign(0.013) TCGA-77-8144-01 6 75847204 75847204 C A COL12A1 Missense_Mutation p.Q1781H 0.44 probably_damaging(0.982) TCGA-77-8144-01 6 80197515 80197515 G C LCA5 Missense_Mutation p.P434A 0.39 tolerated(0.24) benign(0.076) TCGA-77-8144-01 6 86328589 86328589 T C SYNCRIP Silent p.P409P 0.58 TCGA-77-8144-01 6 99828168 99828168 C T COQ3 Missense_Mutation p.G95S 0.30 tolerated(0.85) benign(0.002) TCGA-77-8144-01 7 111927029 111927029 G T ZNF277 Nonsense_Mutation p.E65* 0.55 TCGA-77-8144-01 7 11676029 11676029 C T THSD7A Silent p.E250E 0.40 TCGA-77-8144-01 7 140285461 140285461 G T DENND2A Silent p.R391R 0.55 TCGA-77-8144-01 7 143421543 143421543 G T FAM115C Missense_Mutation p.W753L 0.50 deleterious(0) probably_damaging(0.999) TCGA-77-8144-01 7 149462929 149462929 C A ZNF467 Missense_Mutation p.C221F 0.45 deleterious(0) probably_damaging(0.985) TCGA-77-8144-01 7 151927075 151927075 G T KMT2C Missense_Mutation p.A970E 0.10 benign(0.17) TCGA-77-8144-01 7 23827700 23827700 A T STK31 Missense_Mutation p.L863F 0.32 deleterious(0.01) possibly_damaging(0.698) TCGA-77-8144-01 7 27213554 27213554 A T HOXA10 Silent p.S124S 0.31 TCGA-77-8144-01 7 33545188 33545188 G T BBS9 Missense_Mutation p.K743N 0.37 tolerated(1) benign(0.023) TCGA-77-8144-01 7 44286739 44286739 C - CAMK2B Frame_Shift_Del p.V132Sfs*22 0.23 TCGA-77-8144-01 7 47698579 47698579 G A C7orf65 Missense_Mutation p.G70E 0.38 tolerated_low_confidence(0.49) probably_damaging(0.969) TCGA-77-8144-01 7 73011082 73011082 G C MLXIPL Missense_Mutation p.P570R 0.45 deleterious(0.01) possibly_damaging(0.873) TCGA-77-8144-01 7 81589084 81589084 C A CACNA2D1 Missense_Mutation p.G1010W 0.44 deleterious(0.02) possibly_damaging(0.698) TCGA-77-8144-01 7 88423777 88423777 A T C7orf62 Missense_Mutation p.D160E 0.54 tolerated(0.06) probably_damaging(0.999) TCGA-77-8144-01 7 97361989 97361989 T C TAC1 Missense_Mutation p.I22T 0.66 tolerated(0.22) benign(0.007) TCGA-77-8144-01 7 97944771 97944771 C T BAIAP2L1 Splice_Site p.X213_splice 0.18 TCGA-77-8144-01 8 105509711 105509711 C T LRP12 Missense_Mutation p.D357N 0.52 tolerated(0.27) probably_damaging(1) TCGA-77-8144-01 8 106814514 106814514 C T ZFPM2 Missense_Mutation p.T735I 0.52 deleterious(0) possibly_damaging(0.764) TCGA-77-8144-01 8 12040023 12040023 G C FAM86B1 3'UTR 0.38 TCGA-77-8144-01 8 143695458 143695458 G T ARC Missense_Mutation p.R59S 0.38 tolerated_low_confidence(0.15) probably_damaging(0.994) TCGA-77-8144-01 8 144511763 144511763 G C MAFA Missense_Mutation p.R272G 0.67 deleterious(0) probably_damaging(0.995) TCGA-77-8144-01 8 145738278 145738278 C T RECQL4 Missense_Mutation p.A903T 0.40 deleterious(0.03) benign(0.298) TCGA-77-8144-01 8 1616742 1616742 G T DLGAP2 Silent p.L606L 0.27 TCGA-77-8144-01 8 18729639 18729639 C T PSD3 Silent p.E245E 0.42 TCGA-77-8144-01 8 22473617 22473617 C T CCAR2 Silent p.V567V 0.57 TCGA-77-8144-01 8 26365929 26365929 G T PNMA2 Missense_Mutation p.Q115K 0.57 tolerated(0.09) probably_damaging(0.952) TCGA-77-8144-01 8 29207637 29207637 G T DUSP4 Missense_Mutation p.F53L 0.69 deleterious(0) probably_damaging(0.983) TCGA-77-8144-01 8 68138269 68138269 C T ARFGEF1 Missense_Mutation p.D1356N 0.48 tolerated(0.06) benign(0.098) TCGA-77-8144-01 8 77765910 77765910 A T ZFHX4 Silent p.P2251P 0.37 TCGA-77-8144-01 8 77766904 77766904 G A ZFHX4 Missense_Mutation p.D2583N 0.51 benign(0.224) TCGA-77-8144-01 8 82713790 82713790 T C SNX16 Missense_Mutation p.E326G 0.48 tolerated_low_confidence(0.19) benign(0.003) TCGA-77-8144-01 8 87443873 87443873 G T WWP1 Missense_Mutation p.G501V 0.19 deleterious(0) possibly_damaging(0.869) TCGA-77-8144-01 8 97157267 97157267 C A GDF6 Missense_Mutation p.G298C 0.56 deleterious(0) benign(0.345) TCGA-77-8144-01 9 100136900 100136900 G A CCDC180 Missense_Mutation p.S1603N 0.43 tolerated(0.23) benign(0.383) TCGA-77-8144-01 9 107588042 107588042 T A ABCA1 Missense_Mutation p.T822S 0.30 tolerated(0.29) benign(0.098) TCGA-77-8144-01 9 113231229 113231229 C T SVEP1 Missense_Mutation p.D1051N 0.21 benign(0.375) TCGA-77-8144-01 9 118949935 118949935 C G PAPPA Silent p.P306P 0.46 TCGA-77-8144-01 9 121976176 121976176 G T BRINP1 Intron 0.29 TCGA-77-8144-01 9 125616225 125616225 C G RC3H2 Intron 0.31 TCGA-77-8144-01 9 132084725 132084725 A T C9orf106 RNA 0.44 TCGA-77-8144-01 9 135983524 135983524 C T RALGDS Missense_Mutation p.E350K 0.50 tolerated(0.08) unknown(0) TCGA-77-8144-01 9 138905143 138905143 C A NACC2 Splice_Site p.X386_splice 0.48 TCGA-77-8144-01 9 139418278 139418278 G T NOTCH1 Nonsense_Mutation p.C98* 0.84 TCGA-77-8144-01 9 140115282 140115282 G C RNF208 Missense_Mutation p.S128W 0.09 deleterious_low_confidence(0.04) benign(0.045) TCGA-77-8144-01 9 140115462 140115462 G C RNF208 Nonsense_Mutation p.S68* 0.15 TCGA-77-8144-01 9 14748461 14748461 G A FREM1 Missense_Mutation p.R1912W 0.57 tolerated(0.07) benign(0) TCGA-77-8144-01 9 21974684 21974684 G T CDKN2A Missense_Mutation p.P48Q 0.54 deleterious(0.02) probably_damaging(0.998) TCGA-77-8144-01 9 33618489 33618489 C A TRBV20OR9-2 Nonsense_Mutation p.Y125* 0.54 TCGA-77-8144-01 9 73398999 73398999 T C TRPM3 Intron 0.34 TCGA-77-8144-01 9 75369762 75369762 G A TMC1 Missense_Mutation p.A235T 0.30 tolerated(0.3) benign(0.009) TCGA-77-8144-01 9 84562582 84562583 AT - RP11-383M4.6 Intron 0.28 TCGA-77-8144-01 9 95477635 95477635 A G BICD2 Missense_Mutation p.L790P 0.18 deleterious(0) probably_damaging(1) TCGA-77-8144-01 9 95992031 95992031 G T WNK2 Missense_Mutation p.M245I 0.18 unknown(0) TCGA-77-8144-01 X 114536571 114536571 T C LUZP4 Missense_Mutation p.Y36H 0.59 deleterious(0) benign(0.403) TCGA-77-8144-01 X 123518650 123518650 G A TENM1 Missense_Mutation p.A2044V 0.61 deleterious(0.04) possibly_damaging(0.573) TCGA-77-8144-01 X 130678836 130678836 C A OR13H1 Silent p.S263S 0.58 TCGA-77-8144-01 X 140985549 140985549 C A MAGEC3 Silent p.T621T 0.86 TCGA-77-8144-01 X 142717778 142717778 G T SLITRK4 Missense_Mutation p.H383N 0.81 deleterious(0.01) benign(0.259) TCGA-77-8144-01 X 149013290 149013290 C T MAGEA8 Nonsense_Mutation p.Q82* 0.83 TCGA-77-8144-01 X 151896699 151896699 C A MAGEA12 3'Flank 0.81 TCGA-77-8144-01 X 152225867 152225867 T C PNMA3 Missense_Mutation p.V152A 0.82 tolerated(0.36) benign(0.041) TCGA-77-8144-01 X 23019901 23019901 C T DDX53 Missense_Mutation p.S576L 0.57 tolerated(0.05) benign(0.002) TCGA-77-8144-01 X 31089635 31089635 T G FTHL17 Missense_Mutation p.I146L 0.71 tolerated(0.1) benign(0.069) TCGA-77-8144-01 X 67273562 67273562 C T OPHN1 Missense_Mutation p.R750Q 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.455) TCGA-77-8144-01 X 79279596 79279596 G T TBX22 Missense_Mutation p.G131W 0.65 deleterious(0) probably_damaging(1) TCGA-77-8145-01 10 121190930 121190930 A T GRK5 Missense_Mutation p.K210I 0.17 deleterious(0) probably_damaging(1) TCGA-77-8145-01 10 134261499 134261499 T C C10orf91 Silent p.S124S 0.19 TCGA-77-8145-01 10 23482805 23482805 A T PTF1A Missense_Mutation p.E319D 0.20 tolerated_low_confidence(0.05) unknown(0) TCGA-77-8145-01 10 30317921 30317921 G A KIAA1462 Missense_Mutation p.P386S 0.14 tolerated(0.52) benign(0.19) TCGA-77-8145-01 10 34573120 34573121 - T PARD3 Frame_Shift_Ins p.I1043Nfs*29 0.12 TCGA-77-8145-01 11 116692101 116692101 G A APOA4 Missense_Mutation p.P225S 0.26 deleterious(0) probably_damaging(1) TCGA-77-8145-01 11 123753855 123753856 - A TMEM225 Frame_Shift_Ins p.W223Lfs*75 0.16 TCGA-77-8145-01 11 19246854 19246854 G A E2F8 Nonsense_Mutation p.Q779* 0.20 TCGA-77-8145-01 11 30032971 30032971 G T KCNA4 Missense_Mutation p.L419M 0.15 deleterious(0.02) probably_damaging(0.996) TCGA-77-8145-01 11 50003464 50003464 T C OR4C12 Missense_Mutation p.T192A 0.19 tolerated_low_confidence(0.13) benign(0.345) TCGA-77-8145-01 11 61032442 61032442 G C VWCE Missense_Mutation p.R709G 0.16 deleterious(0.04) benign(0.206) TCGA-77-8145-01 11 73753145 73753145 T G C2CD3 Missense_Mutation p.T1872P 0.19 tolerated(0.22) benign(0.008) TCGA-77-8145-01 11 7507043 7507043 G A OLFML1 5'UTR 0.22 TCGA-77-8145-01 11 89069031 89069031 A G NOX4 Missense_Mutation p.I533T 0.11 deleterious(0) possibly_damaging(0.555) TCGA-77-8145-01 12 101505408 101505408 G T ANO4 Silent p.A755A 0.24 TCGA-77-8145-01 12 102142886 102142886 G A GNPTAB Missense_Mutation p.A1229V 0.18 deleterious(0.04) probably_damaging(0.999) TCGA-77-8145-01 12 108985494 108985494 A G TMEM119 Silent p.H222H 0.17 TCGA-77-8145-01 12 109017342 109017342 C A SELPLG Missense_Mutation p.A264S 0.16 tolerated(0.16) benign(0.1) TCGA-77-8145-01 12 11174627 11174627 G C TAS2R19 Missense_Mutation p.L182V 0.18 tolerated(0.08) benign(0.252) TCGA-77-8145-01 12 121878756 121878756 C A KDM2B Missense_Mutation p.G1158V 0.28 deleterious(0) probably_damaging(1) TCGA-77-8145-01 12 14849374 14849374 C A GUCY2C Silent p.T3T 0.26 TCGA-77-8145-01 12 51722301 51722301 G T CELA1 3'UTR 0.33 TCGA-77-8145-01 12 53722432 53722432 G A SP7 Missense_Mutation p.A265V 0.12 deleterious(0.02) benign(0.045) TCGA-77-8145-01 13 102379097 102379097 A G FGF14 Missense_Mutation p.S163P 0.23 deleterious(0) probably_damaging(0.988) TCGA-77-8145-01 13 108862143 108862143 G T LIG4 Missense_Mutation p.P492T 0.06 tolerated(0.27) benign(0.003) TCGA-77-8145-01 13 110845223 110845223 G A COL4A1 Silent p.D473D 0.10 TCGA-77-8145-01 14 21058444 21058444 T C RNASE12 Missense_Mutation p.K147E 0.18 tolerated_low_confidence(1) benign(0) TCGA-77-8145-01 14 21558742 21558742 C A ZNF219 Missense_Mutation p.G708W 0.38 deleterious_low_confidence(0) possibly_damaging(0.892) TCGA-77-8145-01 14 24770870 24770870 T G NOP9 Silent p.P250P 0.31 TCGA-77-8145-01 14 76045835 76045835 C T FLVCR2 Missense_Mutation p.P174S 0.12 deleterious(0.04) possibly_damaging(0.474) TCGA-77-8145-01 14 89628984 89628984 G A FOXN3 Missense_Mutation p.S416F 0.19 deleterious(0) possibly_damaging(0.618) TCGA-77-8145-01 15 54847696 54847696 C G UNC13C Missense_Mutation p.L1982V 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-77-8145-01 16 2273633 2273633 G A E4F1 Missense_Mutation p.V7M 0.22 tolerated_low_confidence(0.26) probably_damaging(0.997) TCGA-77-8145-01 16 28181217 28181217 G A XPO6 Missense_Mutation p.P140L 0.23 deleterious(0.01) possibly_damaging(0.616) TCGA-77-8145-01 16 49672382 49672382 G T ZNF423 Nonsense_Mutation p.C227* 0.19 TCGA-77-8145-01 16 57741474 57741474 G T CCDC135 Missense_Mutation p.D321Y 0.25 deleterious(0) probably_damaging(0.989) TCGA-77-8145-01 16 602892 602892 G A CAPN15 Silent p.L978L 0.21 TCGA-77-8145-01 16 72992893 72992893 G A ZFHX3 Silent p.A384A 0.22 TCGA-77-8145-01 16 75564040 75564040 G A CHST5 Silent p.L81L 0.32 TCGA-77-8145-01 16 76569511 76569511 T A CNTNAP4 Missense_Mutation p.L869Q 0.25 deleterious(0) possibly_damaging(0.696) TCGA-77-8145-01 16 88643556 88643556 C T ZC3H18 Missense_Mutation p.R9W 0.23 deleterious_low_confidence(0) unknown(0) TCGA-77-8145-01 16 89789981 89789981 G C ZNF276 Silent p.G290G 0.09 TCGA-77-8145-01 17 33902858 33902861 GATG AAT PEX12 Frame_Shift_Del p.I341Lfs*11 0.24 TCGA-77-8145-01 17 36491526 36491526 G A GPR179 Missense_Mutation p.R452W 0.10 deleterious(0) probably_damaging(1) TCGA-77-8145-01 17 38991368 38991368 G - TMEM99 Frame_Shift_Del p.G201Vfs*11 0.22 TCGA-77-8145-01 17 60654123 60654123 G T TLK2 Missense_Mutation p.G392V 0.12 tolerated(0.08) benign(0.037) TCGA-77-8145-01 17 61497637 61497637 C G TANC2 Missense_Mutation p.R1432G 0.16 deleterious_low_confidence(0.04) benign(0.095) TCGA-77-8145-01 17 73698596 73698596 G C SAP30BP Missense_Mutation p.E145Q 0.15 tolerated(0.27) probably_damaging(0.966) TCGA-77-8145-01 17 9764455 9764455 G A GLP2R Splice_Site p.X309_splice 0.12 TCGA-77-8145-01 18 61322988 61322988 G A SERPINB3 Missense_Mutation p.T359I 0.23 tolerated(0.47) possibly_damaging(0.834) TCGA-77-8145-01 18 77208854 77208854 C T NFATC1 Missense_Mutation p.R474C 0.13 deleterious(0) probably_damaging(0.988) TCGA-77-8145-01 19 11943675 11943675 G T ZNF440 Missense_Mutation p.V562L 0.44 tolerated(0.14) benign(0) TCGA-77-8145-01 19 17017804 17017804 G A CPAMD8 Missense_Mutation p.P1376S 0.31 tolerated(0.18) possibly_damaging(0.508) TCGA-77-8145-01 19 21606898 21606898 T C ZNF493 Silent p.H479H 0.19 TCGA-77-8145-01 19 3019365 3019365 G C TLE2 Missense_Mutation p.L156V 0.36 deleterious(0.03) probably_damaging(0.991) TCGA-77-8145-01 19 36278099 36278099 C T ARHGAP33 Missense_Mutation p.P717S 0.38 deleterious_low_confidence(0.05) possibly_damaging(0.574) TCGA-77-8145-01 19 38934416 38934416 G A RYR1 Missense_Mutation p.G135E 0.26 probably_damaging(1) TCGA-77-8145-01 19 47539274 47539274 C G NPAS1 Nonsense_Mutation p.S192* 0.19 TCGA-77-8145-01 19 49362177 49362177 C T PLEKHA4 Silent p.E304E 0.13 TCGA-77-8145-01 19 51021353 51021353 C G LRRC4B Silent p.T539T 0.53 TCGA-77-8145-01 19 9676710 9676710 C A ZNF121 Missense_Mutation p.R360I 0.41 deleterious(0.02) benign(0.101) TCGA-77-8145-01 1 10423345 10423345 C T KIF1B Nonsense_Mutation p.R1391* 0.14 TCGA-77-8145-01 1 158619668 158619668 G - SPTA1 Frame_Shift_Del p.H1183Mfs*57 0.22 TCGA-77-8145-01 1 181732587 181732587 C T CACNA1E Nonsense_Mutation p.R1579* 0.38 TCGA-77-8145-01 1 201043722 201043722 T C CACNA1S Missense_Mutation p.I659V 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-77-8145-01 1 216108008 216108008 C A USH2A Missense_Mutation p.S2417I 0.15 possibly_damaging(0.781) TCGA-77-8145-01 1 237819167 237819167 C A RYR2 Missense_Mutation p.A2671E 0.24 probably_damaging(0.989) TCGA-77-8145-01 1 247695830 247695830 G T OR2C3 5'UTR 0.12 TCGA-77-8145-01 1 44064533 44064533 C T PTPRF Silent p.G754G 0.14 TCGA-77-8145-01 1 67205203 67205203 G T SGIP1 Silent p.V739V 0.15 TCGA-77-8145-01 1 70257781 70257781 C G LRRC7 Nonsense_Mutation p.S82* 0.20 TCGA-77-8145-01 1 99470195 99470195 G A LPPR5 Silent p.S11S 0.07 TCGA-77-8145-01 20 21327138 21327138 G A XRN2 Missense_Mutation p.V539M 0.08 deleterious(0) probably_damaging(0.971) TCGA-77-8145-01 21 43945944 43945944 C T SLC37A1 Nonsense_Mutation p.R39* 0.17 TCGA-77-8145-01 22 24036620 24036620 G A RGL4 Silent p.T333T 0.17 TCGA-77-8145-01 22 26423287 26423287 G A MYO18B Silent p.R2449R 0.44 TCGA-77-8145-01 22 29921891 29921891 T C THOC5 Missense_Mutation p.N371D 0.37 deleterious(0.04) possibly_damaging(0.874) TCGA-77-8145-01 22 37770743 37770743 C A ELFN2 Missense_Mutation p.D278Y 0.52 deleterious(0.02) possibly_damaging(0.791) TCGA-77-8145-01 2 112638316 112638316 C A ANAPC1 Missense_Mutation p.K29N 0.22 tolerated(0.1) benign(0.223) TCGA-77-8145-01 2 132277134 132277134 C G AC093838.4 RNA 0.19 TCGA-77-8145-01 2 138169220 138169220 T C THSD7B Missense_Mutation p.Y913H 0.30 deleterious(0.03) possibly_damaging(0.607) TCGA-77-8145-01 2 15378655 15378655 T A NBAS Missense_Mutation p.K1960N 0.24 deleterious(0.04) benign(0.004) TCGA-77-8145-01 2 163003981 163003981 G C GCG Missense_Mutation p.Q46E 0.27 tolerated(0.69) benign(0.007) TCGA-77-8145-01 2 166245957 166245957 G C SCN2A Missense_Mutation p.E1881Q 0.36 deleterious(0.01) benign(0.304) TCGA-77-8145-01 2 166786825 166786825 C A TTC21B Missense_Mutation p.R315I 0.32 deleterious(0) possibly_damaging(0.786) TCGA-77-8145-01 2 166911148 166911148 G A SCN1A Missense_Mutation p.A201V 0.36 deleterious(0) probably_damaging(0.998) TCGA-77-8145-01 2 170002362 170002362 A G LRP2 Missense_Mutation p.W4295R 0.13 probably_damaging(0.928) TCGA-77-8145-01 2 179639808 179639808 A G TTN Silent p.D2210D 0.17 TCGA-77-8145-01 2 242122068 242122068 G A PPP1R7 Missense_Mutation p.D305N 0.09 tolerated(0.3) benign(0.426) TCGA-77-8145-01 2 26414360 26414360 C A HADHA Missense_Mutation p.C713F 0.21 tolerated(1) benign(0.008) TCGA-77-8145-01 2 75276748 75276748 C A TACR1 Missense_Mutation p.Q345H 0.20 tolerated(0.07) benign(0.034) TCGA-77-8145-01 2 89278238 89278238 A C IGKV3-7 Missense_Mutation p.L33V 0.17 tolerated(1) benign(0.001) TCGA-77-8145-01 2 89987022 89987022 C G IGKV2D-29 Missense_Mutation p.S101R 0.13 deleterious(0.02) possibly_damaging(0.491) TCGA-77-8145-01 2 90229403 90229403 G T IGKV1D-42 Missense_Mutation p.D75Y 0.21 tolerated(0.08) benign(0.007) TCGA-77-8145-01 2 98263834 98263834 G A COX5B Missense_Mutation p.G69R 0.10 tolerated(0.49) benign(0.009) TCGA-77-8145-01 2 98263887 98263887 G C COX5B Missense_Mutation p.K86N 0.10 deleterious(0.02) benign(0.208) TCGA-77-8145-01 2 98264464 98264464 G C COX5B Missense_Mutation p.E95Q 0.15 deleterious(0) probably_damaging(0.984) TCGA-77-8145-01 3 124066065 124066065 G A KALRN Missense_Mutation p.A573T 0.17 tolerated(0.09) unknown(0) TCGA-77-8145-01 3 130425882 130425882 T G PIK3R4 Missense_Mutation p.K877N 0.08 tolerated(0.31) benign(0.019) TCGA-77-8145-01 3 133674027 133674027 G A SLCO2A1 Silent p.S136S 0.17 TCGA-77-8145-01 3 15126293 15126293 C T ZFYVE20 Missense_Mutation p.G183R 0.21 deleterious(0) probably_damaging(1) TCGA-77-8145-01 3 154147347 154147347 G A GPR149 Missense_Mutation p.H20Y 0.10 tolerated(0.17) benign(0.002) TCGA-77-8145-01 3 16633624 16633624 A G DAZL Missense_Mutation p.V276A 0.16 deleterious(0.01) benign(0.441) TCGA-77-8145-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.72 deleterious(0.04) probably_damaging(0.96) TCGA-77-8145-01 3 194118472 194118472 G T GP5 Missense_Mutation p.N180K 0.23 deleterious(0) probably_damaging(1) TCGA-77-8145-01 3 49148000 49148000 C A USP19 Nonsense_Mutation p.E1244* 0.16 TCGA-77-8145-01 3 53883798 53883798 G A IL17RB Missense_Mutation p.V68I 0.07 tolerated(1) benign(0.002) TCGA-77-8145-01 3 6903558 6903558 C G GRM7 Silent p.V161V 0.39 TCGA-77-8145-01 4 114469863 114469863 C A CAMK2D Nonsense_Mutation p.E122* 0.24 TCGA-77-8145-01 4 123814039 123814039 T C NUDT6 Missense_Mutation p.K299E 0.21 deleterious(0.02) probably_damaging(0.93) TCGA-77-8145-01 4 134073461 134073461 G T PCDH10 Missense_Mutation p.L722F 0.28 deleterious(0.04) probably_damaging(0.997) TCGA-77-8145-01 4 54344903 54344903 G A LNX1 Missense_Mutation p.H498Y 0.11 tolerated(1) benign(0.002) TCGA-77-8145-01 4 77028936 77028936 C T ART3 Silent p.I342I 0.12 TCGA-77-8145-01 4 83347655 83347655 C T HNRNPDL Missense_Mutation p.G385R 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.808) TCGA-77-8145-01 5 112162823 112162823 C T APC Missense_Mutation p.A476V 0.23 benign(0.33) TCGA-77-8145-01 5 13714585 13714585 G A DNAH5 Missense_Mutation p.R4352W 0.12 possibly_damaging(0.898) TCGA-77-8145-01 5 13913978 13913978 A G DNAH5 Silent p.F470F 0.38 TCGA-77-8145-01 5 5463168 5463168 G C KIAA0947 Missense_Mutation p.D1241H 0.32 deleterious(0) probably_damaging(0.973) TCGA-77-8145-01 5 79025781 79025781 G A CMYA5 Missense_Mutation p.C398Y 0.38 benign(0.001) TCGA-77-8145-01 6 127836012 127836012 C G SOGA3 Missense_Mutation p.E428Q 0.18 tolerated(0.79) benign(0.023) TCGA-77-8145-01 6 24475354 24475354 C T GPLD1 Missense_Mutation p.G146R 0.12 deleterious(0) probably_damaging(0.911) TCGA-77-8145-01 6 29324040 29324040 C G OR5V1 5'UTR 0.20 TCGA-77-8145-01 6 29342398 29342398 G T OR12D3 Missense_Mutation p.L223I 0.15 tolerated(0.45) benign(0.232) TCGA-77-8145-01 6 35107867 35107867 T G TCP11 Intron 0.15 TCGA-77-8145-01 6 49803081 49803081 G T CRISP1 Missense_Mutation p.T233K 0.17 tolerated(0.2) benign(0.229) TCGA-77-8145-01 6 79912051 79912051 T C HMGN3 Missense_Mutation p.Q68R 0.04 tolerated(0.35) possibly_damaging(0.728) TCGA-77-8145-01 6 88385623 88385623 T C AKIRIN2 Missense_Mutation p.T186A 0.10 deleterious(0) probably_damaging(0.997) TCGA-77-8145-01 7 103179603 103179603 T G RELN Missense_Mutation p.T2368P 0.26 tolerated(0.07) probably_damaging(0.997) TCGA-77-8145-01 7 115614306 115614306 T A TFEC Missense_Mutation p.E62V 0.20 deleterious(0) benign(0.001) TCGA-77-8145-01 7 123269192 123269196 AACTG - ASB15 Frame_Shift_Del p.N382Sfs*9 0.08 TCGA-77-8145-01 7 143632980 143632980 A C OR2F2 Missense_Mutation p.I219L 0.43 tolerated(0.6) benign(0.021) TCGA-77-8145-01 7 148863348 148863348 G T ZNF398 Missense_Mutation p.K173N 0.31 deleterious(0) probably_damaging(0.999) TCGA-77-8145-01 7 151853008 151853008 G C KMT2C Missense_Mutation p.Q3983E 0.40 benign(0.196) TCGA-77-8145-01 7 23381735 23381735 G A IGF2BP3 Missense_Mutation p.P384L 0.19 tolerated(0.08) benign(0.009) TCGA-77-8145-01 7 33044965 33044965 C T FKBP9 3'UTR 0.17 TCGA-77-8145-01 7 37780110 37780110 C G GPR141 Missense_Mutation p.L39V 0.17 tolerated(0.28) benign(0.329) TCGA-77-8145-01 7 56123383 56123383 G T CCT6A Nonsense_Mutation p.E135* 0.16 TCGA-77-8145-01 7 70853310 70853310 C G WBSCR17 Missense_Mutation p.S171C 0.21 deleterious(0) probably_damaging(0.997) TCGA-77-8145-01 7 81372733 81372733 C A HGF Silent p.P267P 0.34 TCGA-77-8145-01 8 12957249 12957249 C G DLC1 Missense_Mutation p.R866P 0.18 tolerated(0.2) probably_damaging(0.91) TCGA-77-8145-01 8 135669878 135669878 T G ZFAT Missense_Mutation p.N41T 0.07 tolerated(0.33) benign(0.115) TCGA-77-8145-01 8 139164191 139164191 C T FAM135B Missense_Mutation p.G843R 0.26 deleterious_low_confidence(0.03) benign(0.343) TCGA-77-8145-01 8 139380243 139380245 TAC AA FAM135B Intron 0.11 TCGA-77-8145-01 8 141711117 141711117 G T PTK2 Missense_Mutation p.S791Y 0.19 deleterious(0.04) benign(0.066) TCGA-77-8145-01 8 38961151 38961151 T C ADAM9 Missense_Mutation p.S798P 0.33 tolerated(0.24) benign(0.006) TCGA-77-8145-01 8 70512893 70512893 A G SULF1 Missense_Mutation p.T264A 0.37 deleterious(0.03) possibly_damaging(0.824) TCGA-77-8145-01 8 87616404 87616404 A C CNGB3 Missense_Mutation p.H566Q 0.09 tolerated(0.54) benign(0.001) TCGA-77-8145-01 9 121929891 121929891 C G BRINP1 Missense_Mutation p.R586P 0.29 deleterious(0.01) benign(0.327) TCGA-77-8145-01 9 134405998 134405998 C G UCK1 Missense_Mutation p.G53A 0.61 deleterious(0.04) possibly_damaging(0.52) TCGA-77-8145-01 9 135739089 135739089 G A AK8 Missense_Mutation p.T99M 0.12 deleterious(0.02) benign(0.008) TCGA-77-8145-01 9 139399480 139399480 C A NOTCH1 Nonsense_Mutation p.E1555* 0.31 TCGA-77-8145-01 9 32544208 32544208 T C TOPORS Missense_Mutation p.I105M 0.10 deleterious(0) probably_damaging(1) TCGA-77-8145-01 X 118219451 118219451 C A KIAA1210 Missense_Mutation p.M1581I 0.54 deleterious(0.04) probably_damaging(0.916) TCGA-77-8145-01 X 130409686 130409686 C G IGSF1 Missense_Mutation p.G989R 0.40 deleterious(0) probably_damaging(1) TCGA-77-8145-01 X 134989201 134989201 C T SAGE1 Missense_Mutation p.P285S 0.29 tolerated(0.46) benign(0.008) TCGA-77-8145-01 X 135427957 135427957 G A GPR112 Missense_Mutation p.A698T 0.11 tolerated(1) benign(0) TCGA-77-8145-01 X 35821130 35821130 T C MAGEB16 Missense_Mutation p.Y273H 0.33 deleterious(0.02) probably_damaging(0.946) TCGA-77-8146-01 10 118220486 118220486 C G PNLIPRP3 Missense_Mutation p.P192A 0.14 deleterious(0) probably_damaging(0.995) TCGA-77-8146-01 10 119027232 119027232 G C SLC18A2 Missense_Mutation p.V391L 0.21 tolerated(1) benign(0.006) TCGA-77-8146-01 10 14896156 14896156 G A HSPA14 Missense_Mutation p.R256Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-77-8146-01 10 16990477 16990477 C A CUBN Missense_Mutation p.A1737S 0.39 tolerated(0.72) benign(0.023) TCGA-77-8146-01 10 17083073 17083073 C A CUBN Missense_Mutation p.D1326Y 0.31 deleterious(0) possibly_damaging(0.902) TCGA-77-8146-01 10 17107606 17107606 T A CUBN Missense_Mutation p.T1014S 0.20 deleterious(0.01) possibly_damaging(0.663) TCGA-77-8146-01 10 22653895 22653895 G T SPAG6 Missense_Mutation p.V79F 0.09 deleterious(0.04) possibly_damaging(0.695) TCGA-77-8146-01 10 395332 395332 C A DIP2C Silent p.V1016V 0.45 TCGA-77-8146-01 10 64573486 64573486 G T EGR2 Silent p.A304A 0.10 TCGA-77-8146-01 10 78713556 78713556 C T KCNMA1 Intron 0.16 TCGA-77-8146-01 10 85981662 85981662 A G LRIT2 3'UTR 0.42 TCGA-77-8146-01 11 101324410 101324410 A C TRPC6 Missense_Mutation p.I872R 0.28 tolerated(0.56) possibly_damaging(0.453) TCGA-77-8146-01 11 103908358 103908358 C T DDI1 Nonsense_Mutation p.Q270* 0.29 TCGA-77-8146-01 11 11394120 11394120 C G GALNT18 Missense_Mutation p.G345A 0.14 deleterious(0) probably_damaging(0.999) TCGA-77-8146-01 11 116728588 116728588 C A SIK3 Missense_Mutation p.G1092V 0.25 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-77-8146-01 11 1216458 1216458 G A MUC5AC RNA 0.26 TCGA-77-8146-01 11 123396807 123396807 T A GRAMD1B 5'UTR 0.23 TCGA-77-8146-01 11 123847911 123847911 C A OR10S1 Missense_Mutation p.W163L 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-77-8146-01 11 33308602 33308602 C G HIPK3 Missense_Mutation p.C214W 0.28 deleterious(0) probably_damaging(0.998) TCGA-77-8146-01 11 47356692 47356692 T C MYBPC3 Missense_Mutation p.T936A 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-77-8146-01 11 55579226 55579226 T - OR5L1 Frame_Shift_Del p.L95Qfs*23 0.23 TCGA-77-8146-01 11 56128274 56128274 G T OR8J1 Silent p.L184L 0.22 TCGA-77-8146-01 11 56949546 56949546 C A LRRC55 Missense_Mutation p.A60E 0.21 deleterious(0.03) benign(0.168) TCGA-77-8146-01 11 5776077 5776077 T C OR52N4 Missense_Mutation p.M36T 0.18 deleterious(0.03) possibly_damaging(0.597) TCGA-77-8146-01 11 57971138 57971138 G T OR1S2 Missense_Mutation p.H172Q 0.21 deleterious(0.01) probably_damaging(1) TCGA-77-8146-01 11 61404955 61404955 C A RPLP0P2 RNA 0.37 TCGA-77-8146-01 11 6486961 6486961 C A TRIM3 Intron 0.29 TCGA-77-8146-01 11 65124167 65124167 G A TIGD3 Silent p.L296L 0.20 TCGA-77-8146-01 11 66008962 66008962 G A PACS1 Missense_Mutation p.G832R 0.28 tolerated(0.46) benign(0.024) TCGA-77-8146-01 11 6943175 6943175 G C OR2D3 Missense_Mutation p.G315R 0.13 tolerated(0.22) benign(0.005) TCGA-77-8146-01 11 9052410 9052410 C T SCUBE2 Missense_Mutation p.G689S 0.21 deleterious(0) probably_damaging(1) TCGA-77-8146-01 11 9187399 9187399 T C DENND5A Missense_Mutation p.K756R 0.29 tolerated(0.06) benign(0.179) TCGA-77-8146-01 12 105589088 105589088 C A APPL2 Missense_Mutation p.V404L 0.30 tolerated(0.09) probably_damaging(0.998) TCGA-77-8146-01 12 117513077 117513077 G A TESC Missense_Mutation p.R43C 0.31 deleterious(0) probably_damaging(0.911) TCGA-77-8146-01 12 125465048 125465048 G A DHX37 Silent p.S242S 0.30 TCGA-77-8146-01 12 20905496 20905496 G T SLCO1C1 3'UTR 0.50 TCGA-77-8146-01 12 2676788 2676788 A T CACNA1C Missense_Mutation p.M575L 0.24 tolerated(0.12) benign(0.037) TCGA-77-8146-01 12 52714958 52714958 G T KRT83 Missense_Mutation p.S54R 0.16 tolerated(0.06) probably_damaging(0.989) TCGA-77-8146-01 14 24046318 24046318 C A JPH4 Missense_Mutation p.Q115H 0.22 deleterious(0) probably_damaging(0.986) TCGA-77-8146-01 14 52164883 52164883 G C FRMD6 Missense_Mutation p.L41F 0.27 deleterious(0) probably_damaging(1) TCGA-77-8146-01 14 64954484 64954484 A G ZBTB25 Silent p.S155S 0.16 TCGA-77-8146-01 14 73751063 73751063 G A NUMB Silent p.V225V 0.13 TCGA-77-8146-01 14 92170975 92170975 C A CATSPERB Silent p.V179V 0.29 TCGA-77-8146-01 14 95030338 95030338 C T SERPINA4 Silent p.Y173Y 0.40 TCGA-77-8146-01 14 95923631 95923631 C T SYNE3 Silent p.E224E 0.17 TCGA-77-8146-01 14 96756926 96756926 T C ATG2B Silent p.V1901V 0.44 TCGA-77-8146-01 15 22382988 22382988 C A OR4N4 Missense_Mutation p.N172K 0.12 deleterious(0.02) probably_damaging(0.952) TCGA-77-8146-01 15 22382989 22382989 C T OR4N4 Nonsense_Mutation p.Q173* 0.12 TCGA-77-8146-01 15 44057661 44057661 T C PDIA3 Missense_Mutation p.F206L 0.28 deleterious(0.02) probably_damaging(0.949) TCGA-77-8146-01 15 48726893 48726893 C G FBN1 Missense_Mutation p.V2172L 0.31 benign(0.068) TCGA-77-8146-01 15 74473211 74473211 G A STRA6 Silent p.F623F 0.11 TCGA-77-8146-01 15 90982623 90982623 A T IQGAP1 Missense_Mutation p.D176V 0.29 tolerated(0.11) benign(0.003) TCGA-77-8146-01 16 15932042 15932042 C A MYH11 Missense_Mutation p.S23I 0.34 possibly_damaging(0.613) TCGA-77-8146-01 16 2164258 2164258 G A PKD1 Silent p.L922L 0.22 TCGA-77-8146-01 16 32077459 32077459 C A IGHV3OR16-9 Missense_Mutation p.S25Y 0.22 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-77-8146-01 16 3340331 3340331 G C ZNF263 Missense_Mutation p.G609R 0.30 tolerated(0.09) benign(0.236) TCGA-77-8146-01 16 70560608 70560608 G C SF3B3 Missense_Mutation p.A17P 0.22 deleterious(0.02) possibly_damaging(0.866) TCGA-77-8146-01 16 76509859 76509859 A G CNTNAP4 Missense_Mutation p.H487R 0.31 deleterious(0) probably_damaging(0.982) TCGA-77-8146-01 16 84212759 84212759 G T TAF1C Missense_Mutation p.P800T 0.19 deleterious(0.05) benign(0.364) TCGA-77-8146-01 16 86546607 86546607 G T FOXF1 Silent p.A352A 0.40 TCGA-77-8146-01 17 10431108 10431108 G A MYH2 Silent p.I1276I 0.19 TCGA-77-8146-01 17 10431109 10431109 A G MYH2 Missense_Mutation p.I1276T 0.19 tolerated(0.1) benign(0.201) TCGA-77-8146-01 17 1538817 1538817 G C SCARF1 Missense_Mutation p.I576M 0.59 deleterious(0) probably_damaging(0.994) TCGA-77-8146-01 17 29632580 29632580 G A EVI2B Silent p.N16N 0.51 TCGA-77-8146-01 17 40062878 40062878 C G ACLY Missense_Mutation p.D257H 0.18 deleterious(0) possibly_damaging(0.836) TCGA-77-8146-01 17 45247294 45247294 T A CDC27 Silent p.G122G 0.09 TCGA-77-8146-01 17 59945264 59945264 C A INTS2 Silent p.L1125L 0.59 TCGA-77-8146-01 17 71397826 71397826 G C SDK2 Missense_Mutation p.Q916E 0.11 tolerated(0.13) benign(0.088) TCGA-77-8146-01 17 7578524 7578524 G C TP53 Missense_Mutation p.Q136E 0.55 deleterious(0) probably_damaging(0.997) TCGA-77-8146-01 17 78858844 78858844 G T RPTOR Missense_Mutation p.V627L 0.48 tolerated(0.06) benign(0.166) TCGA-77-8146-01 18 14851685 14851685 A T ANKRD30B Missense_Mutation p.T1129S 0.19 deleterious(0) probably_damaging(0.953) TCGA-77-8146-01 18 44392465 44392465 G A PIAS2 Silent p.S599S 0.12 TCGA-77-8146-01 18 44580798 44580798 G A KATNAL2 Silent p.G35G 0.11 TCGA-77-8146-01 18 47801499 47801499 C T MBD1 Silent p.P303P 0.23 TCGA-77-8146-01 18 51013225 51013225 C T DCC Silent p.L1265L 0.22 TCGA-77-8146-01 18 60230282 60230282 A G ZCCHC2 Missense_Mutation p.M531V 0.37 tolerated(0.62) benign(0.001) TCGA-77-8146-01 19 10104461 10104461 C T COL5A3 Missense_Mutation p.A537T 0.49 unknown(0) TCGA-77-8146-01 19 10602340 10602340 C T KEAP1 Missense_Mutation p.R413H 0.30 deleterious(0) probably_damaging(0.962) TCGA-77-8146-01 19 11762815 11762815 C T ZNF833P RNA 0.38 TCGA-77-8146-01 19 32971429 32971429 G T DPY19L3 Missense_Mutation p.R652L 0.30 deleterious(0) probably_damaging(0.991) TCGA-77-8146-01 19 35941557 35941557 G A FFAR2 Missense_Mutation p.R314K 0.15 tolerated(0.41) benign(0.003) TCGA-77-8146-01 19 39963967 39963967 G T SUPT5H Missense_Mutation p.D795Y 0.34 deleterious(0) probably_damaging(0.967) TCGA-77-8146-01 19 46002463 46002463 C A PPM1N Missense_Mutation p.P245T 0.13 tolerated(0.14) possibly_damaging(0.516) TCGA-77-8146-01 19 47234092 47234092 C G STRN4 Missense_Mutation p.G259A 0.17 tolerated(0.94) benign(0.066) TCGA-77-8146-01 19 49938434 49938434 G T SLC17A7 Missense_Mutation p.A142E 0.16 deleterious(0.04) benign(0.076) TCGA-77-8146-01 19 50779314 50779314 G A MYH14 Silent p.L1178L 0.25 TCGA-77-8146-01 19 52217247 52217247 G A HAS1 Silent p.N390N 0.37 TCGA-77-8146-01 19 53651993 53651993 C G ZNF347 Missense_Mutation p.S72T 0.22 tolerated(0.15) benign(0.065) TCGA-77-8146-01 1 101704856 101704856 G A S1PR1 Missense_Mutation p.G106R 0.59 deleterious(0) probably_damaging(1) TCGA-77-8146-01 1 101704857 101704857 G A S1PR1 Missense_Mutation p.G106E 0.61 deleterious(0) probably_damaging(1) TCGA-77-8146-01 1 13716876 13716876 C T PRAMEF17 Silent p.A121A 0.50 TCGA-77-8146-01 1 144876003 144876003 T A PDE4DIP Missense_Mutation p.Q1559H 0.08 deleterious(0) possibly_damaging(0.789) TCGA-77-8146-01 1 157804390 157804390 C A CD5L Silent p.V175V 0.24 TCGA-77-8146-01 1 158435936 158435936 T A OR10K1 Missense_Mutation p.S195R 0.30 tolerated(0.11) benign(0.033) TCGA-77-8146-01 1 161569525 161569525 C G FCGR2C Intron 0.21 TCGA-77-8146-01 1 203676252 203676252 C G ATP2B4 Nonsense_Mutation p.Y405* 0.37 TCGA-77-8146-01 1 210857036 210857036 C T KCNH1 Missense_Mutation p.V853M 0.33 tolerated_low_confidence(0.07) probably_damaging(0.91) TCGA-77-8146-01 1 215955437 215955437 A G USH2A Missense_Mutation p.Y3563H 0.10 benign(0.417) TCGA-77-8146-01 1 237906920 237906920 C G RYR2 Intron 0.32 TCGA-77-8146-01 1 29644277 29644277 C T PTPRU Silent p.T1187T 0.35 TCGA-77-8146-01 20 21227155 21227155 G C PLK1S1 RNA 0.40 TCGA-77-8146-01 20 5282872 5282872 C A PROKR2 Missense_Mutation p.M323I 0.35 tolerated(0.08) probably_damaging(0.919) TCGA-77-8146-01 20 57576551 57576551 C A CTSZ Missense_Mutation p.E152D 0.21 deleterious(0.02) benign(0.129) TCGA-77-8146-01 20 9434092 9434092 G T PLCB4 Missense_Mutation p.K981N 0.12 tolerated(0.09) probably_damaging(0.999) TCGA-77-8146-01 21 38537879 38537879 T C TTC3 Silent p.H1121H 0.41 TCGA-77-8146-01 21 42647377 42647377 G C BACE2 Missense_Mutation p.Q461H 0.34 tolerated(0.14) benign(0.001) TCGA-77-8146-01 21 44073939 44073939 C T PDE9A Silent p.S5S 0.31 TCGA-77-8146-01 21 46057656 46057656 G A KRTAP10-10 Missense_Mutation p.V108I 0.42 tolerated(0.17) benign(0.114) TCGA-77-8146-01 22 16287735 16287735 C T POTEH Missense_Mutation p.D51N 0.11 deleterious_low_confidence(0.01) unknown(0) TCGA-77-8146-01 22 17073042 17073042 C G CCT8L2 Silent p.R133R 0.11 TCGA-77-8146-01 22 18354739 18354739 G A MICAL3 Silent p.C764C 0.42 TCGA-77-8146-01 22 19418982 19418982 C A HIRA Silent p.P6P 0.10 TCGA-77-8146-01 22 31137269 31137269 G A OSBP2 Missense_Mutation p.A256T 0.40 deleterious(0.02) possibly_damaging(0.861) TCGA-77-8146-01 2 141093248 141093248 A T LRP1B Missense_Mutation p.C4018S 0.24 benign(0.152) TCGA-77-8146-01 2 152482107 152482107 T A NEB Missense_Mutation p.I3465F 0.18 possibly_damaging(0.794) TCGA-77-8146-01 2 162851532 162851532 A G DPP4 Missense_Mutation p.F713S 0.18 deleterious(0) probably_damaging(0.989) TCGA-77-8146-01 2 166897853 166897853 G T SCN1A Missense_Mutation p.P768Q 0.10 deleterious(0) probably_damaging(1) TCGA-77-8146-01 2 166904206 166904206 G T SCN1A Silent p.T367T 0.22 TCGA-77-8146-01 2 176945434 176945434 A T EVX2 Missense_Mutation p.F278I 0.17 deleterious(0.01) benign(0.03) TCGA-77-8146-01 2 179251857 179251857 T C OSBPL6 Missense_Mutation p.M741T 0.12 tolerated(1) benign(0) TCGA-77-8146-01 2 202523220 202523220 T C MPP4 Missense_Mutation p.Y370C 0.14 tolerated(0.12) benign(0.003) TCGA-77-8146-01 2 220396490 220396490 G A ASIC4 Missense_Mutation p.R325H 0.08 deleterious(0.04) benign(0.369) TCGA-77-8146-01 2 230723778 230723778 G A TRIP12 Missense_Mutation p.S204F 0.14 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-77-8146-01 2 233899244 233899244 C T NEU2 Missense_Mutation p.A207V 0.21 tolerated(0.2) benign(0.001) TCGA-77-8146-01 2 27801591 27801591 A T C2orf16 Missense_Mutation p.T718S 0.31 tolerated(0.29) benign(0.099) TCGA-77-8146-01 2 29293652 29293652 G T C2orf71 Missense_Mutation p.P1159Q 0.15 tolerated(0.05) possibly_damaging(0.577) TCGA-77-8146-01 2 29416047 29416047 G T ALK 3'UTR 0.26 TCGA-77-8146-01 2 3391491 3391491 G T TRAPPC12 Nonsense_Mutation p.E33* 0.50 TCGA-77-8146-01 2 41613 41613 G C FAM110C Missense_Mutation p.R321G 0.43 deleterious_low_confidence(0) benign(0.25) TCGA-77-8146-01 2 43783579 43783579 G A THADA Missense_Mutation p.A860V 0.18 tolerated(0.2) benign(0.003) TCGA-77-8146-01 2 44457594 44457594 G T PPM1B Missense_Mutation p.V393L 0.32 tolerated_low_confidence(0.46) benign(0.001) TCGA-77-8146-01 2 80136879 80136879 G A CTNNA2 Missense_Mutation p.V338M 0.09 deleterious(0) possibly_damaging(0.906) TCGA-77-8146-01 2 80529817 80529817 C A LRRTM1 Silent p.S376S 0.15 TCGA-77-8146-01 2 89521176 89521176 G - IGKV2-28 3'Flank 0.17 TCGA-77-8146-01 3 142176475 142176475 C A ATR Silent p.L2542L 0.30 TCGA-77-8146-01 3 148459033 148459033 G C AGTR1 Missense_Mutation p.A71P 0.09 deleterious(0) probably_damaging(1) TCGA-77-8146-01 3 158545117 158545117 C A MFSD1 Missense_Mutation p.S511Y 0.18 deleterious_low_confidence(0) benign(0.016) TCGA-77-8146-01 3 170828581 170828581 G A TNIK Missense_Mutation p.P736S 0.19 tolerated(0.19) probably_damaging(0.995) TCGA-77-8146-01 3 172165655 172165655 C G GHSR Silent p.G183G 0.30 TCGA-77-8146-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.10 deleterious(0.02) probably_damaging(0.959) TCGA-77-8146-01 3 191861812 191861812 G C FGF12 Missense_Mutation p.Q240E 0.13 tolerated_low_confidence(0.11) benign(0.028) TCGA-77-8146-01 3 195594285 195594285 C A TNK2 Missense_Mutation p.G1025C 0.44 tolerated_low_confidence(0.08) probably_damaging(0.976) TCGA-77-8146-01 3 32200390 32200390 G T GPD1L Missense_Mutation p.G214V 0.58 deleterious(0) probably_damaging(0.999) TCGA-77-8146-01 3 38045762 38045762 C T VILL Missense_Mutation p.P608S 0.33 tolerated(0.46) benign(0.002) TCGA-77-8146-01 3 48491449 48491449 A G ATRIP Missense_Mutation p.H85R 0.41 tolerated(0.59) benign(0.039) TCGA-77-8146-01 3 65372856 65372856 T A MAGI1 Intron 0.51 TCGA-77-8146-01 3 71021819 71021819 C A FOXP1 Silent p.V515V 0.25 TCGA-77-8146-01 3 85985006 85985006 C A CADM2 Missense_Mutation p.L257M 0.54 tolerated(0.11) benign(0.402) TCGA-77-8146-01 3 97251243 97251243 G A EPHA6 Missense_Mutation p.G748R 0.28 deleterious(0) probably_damaging(0.964) TCGA-77-8146-01 4 120085398 120085398 G A MYOZ2 Missense_Mutation p.E137K 0.14 deleterious(0.01) probably_damaging(0.986) TCGA-77-8146-01 4 170077830 170077830 C T SH3RF1 Missense_Mutation p.G132S 0.11 tolerated(0.31) probably_damaging(0.988) TCGA-77-8146-01 4 20493506 20493506 G A SLIT2 Missense_Mutation p.E300K 0.24 deleterious(0.05) probably_damaging(0.994) TCGA-77-8146-01 4 3009461 3009461 A G GRK4 Splice_Site p.X148_splice 0.36 TCGA-77-8146-01 4 39466757 39466757 A G LIAS Missense_Mutation p.N162S 0.08 deleterious(0.03) benign(0.257) TCGA-77-8146-01 4 46043114 46043114 C T GABRG1 Missense_Mutation p.G430E 0.11 deleterious(0) possibly_damaging(0.845) TCGA-77-8146-01 4 80246629 80246629 G T NAA11 Missense_Mutation p.P135T 0.47 deleterious(0.02) benign(0.086) TCGA-77-8146-01 5 140482619 140482619 A T PCDHB3 Missense_Mutation p.S796C 0.45 deleterious_low_confidence(0) possibly_damaging(0.497) TCGA-77-8146-01 5 140698889 140698889 T A TAF7 Missense_Mutation p.E241D 0.42 tolerated(0.78) benign(0.002) TCGA-77-8146-01 5 140811223 140811223 G T PCDHGA12 Silent p.G299G 0.33 TCGA-77-8146-01 5 151784674 151784674 T C NMUR2 Translation_Start_Site p.M1? 0.19 deleterious_low_confidence(0.03) benign(0.005) TCGA-77-8146-01 5 151784679 151784679 A T NMUR2 5'UTR 0.25 TCGA-77-8146-01 5 77511916 77511916 C A AP3B1 Missense_Mutation p.R250L 0.38 deleterious(0) possibly_damaging(0.896) TCGA-77-8146-01 5 86685301 86685301 C G RASA1 Nonsense_Mutation p.S1006* 0.43 TCGA-77-8146-01 5 90006841 90006841 T G GPR98 Missense_Mutation p.D2956E 0.50 probably_damaging(0.983) TCGA-77-8146-01 5 94207061 94207061 T A MCTP1 Missense_Mutation p.S700C 0.41 deleterious(0.01) probably_damaging(0.989) TCGA-77-8146-01 5 94834140 94834140 G A TTC37 Missense_Mutation p.S1166L 0.49 tolerated(0.33) benign(0.005) TCGA-77-8146-01 6 109714099 109714099 A C PPIL6 Nonsense_Mutation p.L315* 0.18 TCGA-77-8146-01 6 131931286 131931286 G - MED23 Frame_Shift_Del p.T326Kfs*35 0.25 TCGA-77-8146-01 6 133044085 133044085 C A VNN3 3'UTR 0.27 TCGA-77-8146-01 6 161530947 161530947 G C MAP3K4 Splice_Site p.X1466_splice 0.15 TCGA-77-8146-01 6 161969898 161969898 G T PARK2 Silent p.G357G 0.29 TCGA-77-8146-01 6 17646374 17646374 T A NUP153 Silent p.T548T 0.34 TCGA-77-8146-01 6 34827233 34827233 C T UHRF1BP1 Missense_Mutation p.H1034Y 0.25 tolerated(0.26) benign(0.03) TCGA-77-8146-01 6 4073702 4073702 G T FAM217A Missense_Mutation p.P67T 0.10 tolerated(0.16) benign(0.002) TCGA-77-8146-01 6 41129185 41129185 C T TREM2 Silent p.L69L 0.40 TCGA-77-8146-01 6 41309855 41309855 G C NCR2 Missense_Mutation p.K204N 0.36 deleterious(0.01) probably_damaging(0.987) TCGA-77-8146-01 6 74073347 74073347 G T KHDC3L Missense_Mutation p.V140F 0.09 deleterious(0.04) benign(0.317) TCGA-77-8146-01 6 74345169 74345169 G T SLC17A5 Missense_Mutation p.P252Q 0.29 deleterious(0) probably_damaging(0.998) TCGA-77-8146-01 6 75862154 75862154 C A COL12A1 Missense_Mutation p.V1204L 0.17 benign(0.114) TCGA-77-8146-01 7 100485397 100485397 C T SRRT Missense_Mutation p.A748V 0.26 tolerated(0.22) benign(0.015) TCGA-77-8146-01 7 111980964 111980965 - A ZNF277 Frame_Shift_Ins p.I350Nfs*31 0.17 TCGA-77-8146-01 7 113519098 113519098 T C PPP1R3A Silent p.E683E 0.17 TCGA-77-8146-01 7 143929681 143929681 G T OR2A42 Missense_Mutation p.H86N 0.30 tolerated(0.98) benign(0) TCGA-77-8146-01 7 149513568 149513568 G T SSPO RNA 0.38 TCGA-77-8146-01 7 1588264 1588264 G C TMEM184A Silent p.L235L 0.30 TCGA-77-8146-01 7 37960474 37960474 C G EPDR1 5'UTR 0.26 TCGA-77-8146-01 7 40535948 40535948 C T SUGCT Missense_Mutation p.P358L 0.24 deleterious(0) probably_damaging(0.995) TCGA-77-8146-01 7 42005233 42005233 G A GLI3 Silent p.L1146L 0.19 TCGA-77-8146-01 7 48338023 48338023 C G ABCA13 Missense_Mutation p.S3087C 0.61 probably_damaging(0.962) TCGA-77-8146-01 7 55912277 55912277 G T SEPT14 Missense_Mutation p.Q104K 0.30 tolerated(0.19) benign(0.253) TCGA-77-8146-01 7 92085893 92085893 G C GATAD1 3'UTR 0.19 TCGA-77-8146-01 7 99691883 99691883 C T MCM7 Silent p.E587E 0.37 TCGA-77-8146-01 8 14095182 14095182 G T SGCZ Missense_Mutation p.P115T 0.39 deleterious(0.02) possibly_damaging(0.826) TCGA-77-8146-01 8 17401193 17401193 T A SLC7A2 Silent p.T155T 0.18 TCGA-77-8146-01 8 24350695 24350695 A G ADAM7 Missense_Mutation p.T599A 0.28 tolerated(0.19) benign(0.002) TCGA-77-8146-01 8 3047571 3047571 C G CSMD1 Missense_Mutation p.G1754A 0.23 possibly_damaging(0.899) TCGA-77-8146-01 8 3443733 3443733 C G CSMD1 Missense_Mutation p.G383R 0.26 probably_damaging(1) TCGA-77-8146-01 8 665861 665861 C T ERICH1 Missense_Mutation p.D57N 0.41 tolerated(0.17) benign(0.422) TCGA-77-8146-01 8 68028315 68028315 G T CSPP1 Missense_Mutation p.R480L 0.19 tolerated(0.09) benign(0.001) TCGA-77-8146-01 8 92008912 92008912 C A TMEM55A Missense_Mutation p.M200I 0.21 tolerated(0.35) possibly_damaging(0.785) TCGA-77-8146-01 9 101747852 101747852 G T COL15A1 Missense_Mutation p.A36S 0.28 deleterious(0.04) benign(0.014) TCGA-77-8146-01 X 109963062 109963062 C A CHRDL1 Splice_Site p.X181_splice 0.40 TCGA-77-8146-01 X 123870857 123870857 G A TENM1 Silent p.V242V 0.40 TCGA-77-8146-01 X 153051446 153051446 G A IDH3G Intron 0.06 TCGA-77-8146-01 X 17819987 17819987 C A RAI2 Missense_Mutation p.K48N 0.08 deleterious(0.01) possibly_damaging(0.607) TCGA-77-8146-01 X 86877283 86877283 T A KLHL4 Missense_Mutation p.C333S 0.18 tolerated(1) benign(0.009) TCGA-77-8146-01 X 88008815 88008815 C A CPXCR1 Missense_Mutation p.L134I 0.36 tolerated(0.16) possibly_damaging(0.801) TCGA-77-8146-01 Y 16734384 16734384 A T NLGN4Y Missense_Mutation p.T129S 0.34 tolerated(0.06) probably_damaging(0.971) TCGA-77-8148-01 10 104183302 104183302 C T CUEDC2 Missense_Mutation p.D249N 0.57 tolerated(0.28) benign(0.006) TCGA-77-8148-01 10 115601218 115601218 C T DCLRE1A Missense_Mutation p.D923N 0.17 deleterious(0.04) possibly_damaging(0.771) TCGA-77-8148-01 10 135233765 135233765 C T MTG1 3'UTR 0.71 TCGA-77-8148-01 10 28233321 28233321 G A ARMC4 Missense_Mutation p.P525S 0.46 tolerated(0.62) benign(0.006) TCGA-77-8148-01 10 42928725 42928725 A T CCNYL2 RNA 0.38 TCGA-77-8148-01 10 63170293 63170293 C T TMEM26 Silent p.V298V 0.68 TCGA-77-8148-01 10 7763668 7763668 G T ITIH2 Silent p.R265R 0.43 TCGA-77-8148-01 10 871770 871770 G A LARP4B Missense_Mutation p.T389M 0.42 deleterious(0) probably_damaging(0.953) TCGA-77-8148-01 10 97607200 97607200 C G ENTPD1 Intron 0.67 TCGA-77-8148-01 11 120298841 120298841 C T ARHGEF12 Missense_Mutation p.A157V 0.68 tolerated(0.06) benign(0.007) TCGA-77-8148-01 11 123813819 123813819 A T OR6T1 Missense_Mutation p.S243T 0.60 deleterious(0) probably_damaging(0.986) TCGA-77-8148-01 11 123909348 123909348 G A OR10G7 Missense_Mutation p.R121C 0.62 deleterious(0.01) possibly_damaging(0.889) TCGA-77-8148-01 11 18231492 18231498 TTCCCCG - RP11-113D6.10 Frame_Shift_Del p.F93Yfs*2 0.16 TCGA-77-8148-01 11 18313393 18313393 G A HPS5 Missense_Mutation p.S679L 0.16 tolerated(0.08) benign(0.02) TCGA-77-8148-01 11 20940833 20940833 C T NELL1 Nonsense_Mutation p.Q238* 0.14 TCGA-77-8148-01 11 4703341 4703341 C T OR51E2 Missense_Mutation p.A201T 0.13 tolerated(0.11) probably_damaging(1) TCGA-77-8148-01 11 47354115 47354115 A G MYBPC3 Splice_Site p.X1209_splice 0.11 TCGA-77-8148-01 11 47819962 47819962 A T NUP160 Silent p.A983A 0.21 TCGA-77-8148-01 11 55135738 55135738 G A OR4A15 Missense_Mutation p.A127T 0.51 tolerated_low_confidence(1) benign(0.005) TCGA-77-8148-01 11 55371492 55371492 G T OR4C11 Missense_Mutation p.R120S 0.60 deleterious(0) probably_damaging(0.911) TCGA-77-8148-01 11 55927722 55927722 C A OR8K5 Missense_Mutation p.Q24H 0.75 deleterious_low_confidence(0.01) benign(0.013) TCGA-77-8148-01 11 613393 613393 C T IRF7 Silent p.L363L 0.08 TCGA-77-8148-01 11 6191165 6191165 G - OR52B2 Frame_Shift_Del p.P131Hfs*2 0.10 TCGA-77-8148-01 11 6260445 6260445 G T CNGA4 Missense_Mutation p.Q3H 0.21 deleterious_low_confidence(0.03) possibly_damaging(0.804) TCGA-77-8148-01 11 66049792 66049792 G T CNIH2 Silent p.A48A 0.34 TCGA-77-8148-01 11 67287388 67287388 G T CABP2 Silent p.R171R 0.58 TCGA-77-8148-01 11 7022573 7022573 G A ZNF214 Missense_Mutation p.P114L 0.04 tolerated(0.07) benign(0.381) TCGA-77-8148-01 11 720713 720713 G A EPS8L2 Silent p.P148P 0.65 TCGA-77-8148-01 11 92534574 92534574 G C FAT3 Missense_Mutation p.D2799H 0.64 probably_damaging(0.942) TCGA-77-8148-01 11 92534583 92534583 A T FAT3 Missense_Mutation p.I2802F 0.63 benign(0.172) TCGA-77-8148-01 11 9878030 9878030 C T SBF2 Missense_Mutation p.G780R 0.21 tolerated(0.48) benign(0.008) TCGA-77-8148-01 12 102071164 102071164 C A MYBPC1 Missense_Mutation p.A1027D 0.31 tolerated(0.41) benign(0.172) TCGA-77-8148-01 12 102559633 102559633 G A PARPBP Missense_Mutation p.E265K 0.07 deleterious(0) probably_damaging(0.999) TCGA-77-8148-01 12 132688079 132688079 C T GALNT9 Missense_Mutation p.V46M 0.39 deleterious(0) probably_damaging(0.999) TCGA-77-8148-01 12 15475678 15475678 G A PTPRO Silent p.T6T 0.49 TCGA-77-8148-01 12 41323652 41323652 A C CNTN1 Missense_Mutation p.D184A 0.04 deleterious(0) probably_damaging(1) TCGA-77-8148-01 12 43777613 43777613 C A ADAMTS20 Missense_Mutation p.R1540S 0.35 deleterious(0.03) benign(0.159) TCGA-77-8148-01 12 45173461 45173461 C G NELL2 Silent p.A247A 0.30 TCGA-77-8148-01 12 48091472 48091472 C T RPAP3 Missense_Mutation p.D109N 0.12 tolerated(0.16) probably_damaging(0.959) TCGA-77-8148-01 12 49412616 49412616 C T PRKAG1 5'Flank 0.60 TCGA-77-8148-01 12 53663504 53663504 C T ESPL1 Missense_Mutation p.R260C 0.36 deleterious(0) probably_damaging(0.985) TCGA-77-8148-01 12 56122155 56122155 C A CD63 Intron 0.38 TCGA-77-8148-01 12 65604723 65604723 G T LEMD3 Nonsense_Mutation p.E514* 0.32 TCGA-77-8148-01 12 66909439 66909439 T C GRIP1 Silent p.Q228Q 0.39 TCGA-77-8148-01 12 68595555 68595555 T C IL26 3'UTR 0.28 TCGA-77-8148-01 12 72338097 72338097 T C TPH2 Silent p.H93H 0.36 TCGA-77-8148-01 12 72956007 72956007 G A TRHDE Silent p.S572S 0.29 TCGA-77-8148-01 12 7637953 7637953 C T CD163 Missense_Mutation p.E840K 0.04 deleterious(0) probably_damaging(1) TCGA-77-8148-01 13 100008475 100008475 A C UBAC2 Intron 0.32 TCGA-77-8148-01 13 108955869 108955869 G T TNFSF13B Missense_Mutation p.G221V 0.42 deleterious(0) probably_damaging(0.979) TCGA-77-8148-01 13 28008302 28008302 T C GTF3A Missense_Mutation p.F197L 0.41 deleterious(0.04) benign(0.015) TCGA-77-8148-01 13 32753161 32753161 C T FRY Silent p.Y954Y 0.29 TCGA-77-8148-01 13 36141075 36141075 T C NBEA Missense_Mutation p.V2319A 0.26 deleterious(0) probably_damaging(0.972) TCGA-77-8148-01 13 38144717 38144717 C A POSTN Missense_Mutation p.G757C 0.39 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-77-8148-01 13 41767102 41767102 G A KBTBD7 Missense_Mutation p.A431V 0.31 tolerated(0.47) possibly_damaging(0.85) TCGA-77-8148-01 13 52598191 52598191 G - ALG11 Frame_Shift_Del p.G109Vfs*5 0.23 TCGA-77-8148-01 13 53422177 53422177 G A PCDH8 Missense_Mutation p.A132V 0.24 deleterious(0.01) benign(0.09) TCGA-77-8148-01 14 102463438 102463438 A G DYNC1H1 Missense_Mutation p.I1211V 0.52 benign(0.01) TCGA-77-8148-01 14 104571719 104571719 C A ASPG Silent p.R369R 0.54 TCGA-77-8148-01 14 105413228 105413228 C A AHNAK2 Missense_Mutation p.G2854W 0.71 probably_damaging(0.996) TCGA-77-8148-01 14 105414477 105414477 C G AHNAK2 Silent p.V2437V 0.28 TCGA-77-8148-01 14 106174210 106174210 G T IGHA1 Silent p.A193A 0.25 TCGA-77-8148-01 14 106733435 106733435 C A IGHV1-24 Missense_Mutation p.Q20H 0.24 deleterious(0) probably_damaging(0.953) TCGA-77-8148-01 14 20019946 20019946 T A POTEM Missense_Mutation p.K92M 0.07 deleterious_low_confidence(0.02) probably_damaging(0.99) TCGA-77-8148-01 14 21869056 21869056 C G CHD8 Missense_Mutation p.E1450Q 0.05 deleterious(0.01) benign(0.444) TCGA-77-8148-01 14 36337125 36337125 G T BRMS1L Silent p.L247L 0.35 TCGA-77-8148-01 14 44973766 44973766 C A FSCB Nonsense_Mutation p.E809* 0.06 TCGA-77-8148-01 14 64676719 64676719 C T SYNE2 Silent p.Y6200Y 0.29 TCGA-77-8148-01 14 66208883 66208883 G A FUT8 Missense_Mutation p.D495N 0.36 deleterious(0) probably_damaging(0.997) TCGA-77-8148-01 14 88737084 88737084 G A KCNK10 Intron 0.07 TCGA-77-8148-01 14 89628865 89628865 C T FOXN3 Missense_Mutation p.A456T 0.54 deleterious(0) possibly_damaging(0.611) TCGA-77-8148-01 14 94517427 94517427 G T DDX24 3'UTR 0.32 TCGA-77-8148-01 14 94712850 94712850 A T PPP4R4 Nonsense_Mutation p.R529* 0.57 TCGA-77-8148-01 15 22383046 22383046 A T OR4N4 Missense_Mutation p.M192L 0.28 deleterious(0) benign(0.002) TCGA-77-8148-01 15 25958898 25958898 G A ATP10A Missense_Mutation p.P756L 0.10 deleterious(0) possibly_damaging(0.624) TCGA-77-8148-01 15 28483337 28483337 C G HERC2 Missense_Mutation p.V1259L 0.53 possibly_damaging(0.6) TCGA-77-8148-01 15 31294981 31294981 C A TRPM1 Missense_Mutation p.D1325Y 0.44 deleterious(0.04) benign(0.157) TCGA-77-8148-01 15 39883454 39883454 C T THBS1 Silent p.D772D 0.18 TCGA-77-8148-01 15 50570762 50570762 T C GABPB1 3'UTR 0.17 TCGA-77-8148-01 15 51763583 51763583 G A DMXL2 Missense_Mutation p.S2410F 0.41 deleterious(0.02) possibly_damaging(0.674) TCGA-77-8148-01 15 65943145 65943145 G A SLC24A1 Silent p.E886E 0.07 TCGA-77-8148-01 16 2229832 2229832 G T CASKIN1 Silent p.R1179R 0.31 TCGA-77-8148-01 16 30409623 30409623 G T ZNF48 Missense_Mutation p.R351L 0.27 deleterious(0.01) probably_damaging(0.983) TCGA-77-8148-01 16 50667469 50667469 T C NKD1 Missense_Mutation p.L397P 0.59 tolerated(0.21) benign(0.248) TCGA-77-8148-01 16 58030897 58030897 C A ZNF319 Nonsense_Mutation p.E425* 0.27 TCGA-77-8148-01 16 77228498 77228498 G A MON1B Missense_Mutation p.V248M 0.15 deleterious(0) probably_damaging(0.993) TCGA-77-8148-01 16 77859314 77859314 C G VAT1L Missense_Mutation p.R179G 0.55 deleterious(0.03) benign(0.184) TCGA-77-8148-01 16 85948108 85948108 T A IRF8 Missense_Mutation p.Y195N 0.23 tolerated(0.25) possibly_damaging(0.629) TCGA-77-8148-01 17 10304016 10304016 G A MYH8 Silent p.L1142L 0.56 TCGA-77-8148-01 17 15644452 15644452 G A TBC1D26 Missense_Mutation p.R188K 0.29 deleterious(0.05) probably_damaging(0.983) TCGA-77-8148-01 17 21730995 21730995 C T UBBP4 Silent p.I99I 0.53 TCGA-77-8148-01 17 27030635 27030635 G T PROCA1 Missense_Mutation p.Q318K 0.04 tolerated(0.28) benign(0.268) TCGA-77-8148-01 17 27030636 27030636 T G PROCA1 Silent p.S317S 0.04 TCGA-77-8148-01 17 34072743 34072743 G C GAS2L2 Silent p.P591P 0.47 TCGA-77-8148-01 17 43591996 43591996 T A LRRC37A4P RNA 0.25 TCGA-77-8148-01 17 47109320 47109320 G T IGF2BP1 Missense_Mutation p.R129L 0.39 deleterious(0.01) benign(0.124) TCGA-77-8148-01 17 51901294 51901294 T C KIF2B Silent p.F300F 0.38 TCGA-77-8148-01 17 67079383 67079383 C T ABCA6 Missense_Mutation p.R1482H 0.22 deleterious(0) possibly_damaging(0.657) TCGA-77-8148-01 17 73038325 73038325 T C ATP5H Missense_Mutation p.Y57C 0.45 deleterious(0.02) probably_damaging(0.999) TCGA-77-8148-01 17 7559137 7559137 C G ATP1B2 Missense_Mutation p.A266G 0.25 tolerated(0.05) benign(0.009) TCGA-77-8148-01 17 7578413 7578413 C A TP53 Missense_Mutation p.V173L 0.29 deleterious(0) probably_damaging(0.998) TCGA-77-8148-01 17 7578508 7578508 C T TP53 Missense_Mutation p.C141Y 0.40 deleterious(0) probably_damaging(1) TCGA-77-8148-01 17 76210372 76210372 C T BIRC5 5'UTR 0.28 TCGA-77-8148-01 17 7680768 7680768 C T DNAH2 Missense_Mutation p.S1688L 0.03 possibly_damaging(0.546) TCGA-77-8148-01 17 80436783 80436783 G A NARF Missense_Mutation p.A210T 0.10 tolerated(0.14) benign(0.106) TCGA-77-8148-01 17 904362 904362 C T TIMM22 3'UTR 0.56 TCGA-77-8148-01 18 13087154 13087154 G A CEP192 Missense_Mutation p.G1919S 0.58 deleterious(0) probably_damaging(1) TCGA-77-8148-01 18 18547751 18547751 C A ROCK1 Missense_Mutation p.V1052L 0.42 tolerated(0.37) benign(0.005) TCGA-77-8148-01 18 28986206 28986206 G A DSG4 Silent p.A601A 0.37 TCGA-77-8148-01 18 31318782 31318782 A G ASXL3 Missense_Mutation p.T472A 0.26 benign(0.007) TCGA-77-8148-01 18 34298307 34298307 A C FHOD3 Silent p.R841R 0.31 TCGA-77-8148-01 18 44036534 44036534 G T RNF165 Missense_Mutation p.A326S 0.28 tolerated(0.24) possibly_damaging(0.792) TCGA-77-8148-01 18 70209196 70209196 A T CBLN2 Missense_Mutation p.V67E 0.23 deleterious(0) probably_damaging(0.989) TCGA-77-8148-01 18 70417388 70417388 G A NETO1 Nonsense_Mutation p.Q484* 0.32 TCGA-77-8148-01 18 70417824 70417824 C A NETO1 Silent p.L338L 0.53 TCGA-77-8148-01 18 71793252 71793252 C A FBXO15 Silent p.R290R 0.26 TCGA-77-8148-01 19 10220452 10220452 G A PPAN Intron 0.40 TCGA-77-8148-01 19 11471945 11471945 G A DKFZP761J1410 Silent p.Q123Q 0.36 TCGA-77-8148-01 19 12087955 12087955 A G ZNF763 Missense_Mutation p.T39A 0.14 deleterious(0) possibly_damaging(0.801) TCGA-77-8148-01 19 12638572 12638572 G C ZNF564 Missense_Mutation p.S117C 0.10 deleterious(0.02) probably_damaging(0.992) TCGA-77-8148-01 19 15072855 15072855 G A SLC1A6 Silent p.S298S 0.53 TCGA-77-8148-01 19 24309372 24309372 A T ZNF254 Missense_Mutation p.L190F 0.40 tolerated(0.07) benign(0) TCGA-77-8148-01 19 35622714 35622714 C A LGI4 Missense_Mutation p.G146V 0.33 deleterious(0) possibly_damaging(0.895) TCGA-77-8148-01 19 36501618 36501618 G A ALKBH6 Intron 0.11 TCGA-77-8148-01 19 3785065 3785065 G T MATK Intron 0.32 TCGA-77-8148-01 19 39915807 39915807 G T PLEKHG2 Missense_Mutation p.G1345V 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-77-8148-01 19 41354594 41354594 C G CYP2A6 Missense_Mutation p.V140L 0.12 benign(0.006) TCGA-77-8148-01 19 42907180 42907180 G A LIPE Missense_Mutation p.P849L 0.29 deleterious(0.03) benign(0.222) TCGA-77-8148-01 19 44511173 44511173 A G ZNF230 5'UTR 0.10 TCGA-77-8148-01 19 54502912 54502912 T C CACNG6 Missense_Mutation p.I144T 0.60 deleterious(0.04) benign(0.027) TCGA-77-8148-01 19 54802577 54802577 G T LILRA3 Missense_Mutation p.S288R 0.74 tolerated(0.33) benign(0.02) TCGA-77-8148-01 19 5590374 5590374 G A SAFB2 Missense_Mutation p.H814Y 0.22 deleterious(0) benign(0.024) TCGA-77-8148-01 19 5590376 5590376 C A SAFB2 Missense_Mutation p.R813L 0.22 deleterious(0.01) benign(0.022) TCGA-77-8148-01 19 9453166 9453166 C T ZNF559 Missense_Mutation p.H347Y 0.60 deleterious(0) possibly_damaging(0.7) TCGA-77-8148-01 1 104115737 104115737 G A AMY2B Missense_Mutation p.S123N 0.10 tolerated(0.16) benign(0.006) TCGA-77-8148-01 1 110882461 110882461 G T RBM15 Missense_Mutation p.R145L 0.70 tolerated_low_confidence(0.21) benign(0.017) TCGA-77-8148-01 1 144879316 144879316 C A PDE4DIP Silent p.R1378R 0.16 TCGA-77-8148-01 1 1560995 1560995 G A MIB2 Missense_Mutation p.E427K 0.83 tolerated(0.41) benign(0.013) TCGA-77-8148-01 1 157667008 157667008 C A FCRL3 Missense_Mutation p.G256W 0.42 deleterious(0) probably_damaging(0.999) TCGA-77-8148-01 1 157667174 157667174 C T FCRL3 Silent p.T200T 0.32 TCGA-77-8148-01 1 158817590 158817590 G A MNDA Missense_Mutation p.G354R 0.46 deleterious(0.05) possibly_damaging(0.574) TCGA-77-8148-01 1 161680683 161680683 C T FCRLA Silent p.F94F 0.23 TCGA-77-8148-01 1 175375666 175375666 G T TNR Missense_Mutation p.P62H 0.53 deleterious(0) probably_damaging(0.95) TCGA-77-8148-01 1 179600043 179600043 C A TDRD5 Missense_Mutation p.P372T 0.42 tolerated(0.61) benign(0.088) TCGA-77-8148-01 1 18152428 18152428 C A ACTL8 Missense_Mutation p.T172K 0.72 deleterious(0.02) benign(0.201) TCGA-77-8148-01 1 18704869 18704869 G A IGSF21 3'UTR 0.94 TCGA-77-8148-01 1 19431605 19431605 C T UBR4 Silent p.A4194A 0.31 TCGA-77-8148-01 1 196977744 196977744 G A CFHR5 Silent p.A547A 0.50 TCGA-77-8148-01 1 197073632 197073632 C A ASPM Missense_Mutation p.K1583N 0.49 deleterious(0) probably_damaging(0.984) TCGA-77-8148-01 1 201840366 201840366 A G IPO9 Silent p.G829G 0.41 TCGA-77-8148-01 1 204401438 204401438 G A PIK3C2B Missense_Mutation p.R1349W 0.30 deleterious(0.01) possibly_damaging(0.487) TCGA-77-8148-01 1 205131201 205131201 T C DSTYK Missense_Mutation p.N594S 0.29 tolerated(0.34) benign(0.027) TCGA-77-8148-01 1 21551880 21551880 C T ECE1 Missense_Mutation p.V635M 0.09 deleterious(0) probably_damaging(1) TCGA-77-8148-01 1 217975152 217975152 A G SPATA17 Missense_Mutation p.Q322R 0.44 tolerated(0.36) benign(0.001) TCGA-77-8148-01 1 221875916 221875916 C T DUSP10 Missense_Mutation p.M429I 0.41 deleterious(0.01) probably_damaging(0.977) TCGA-77-8148-01 1 240072019 240072019 G C CHRM3 Missense_Mutation p.S423T 0.38 tolerated(0.26) benign(0.016) TCGA-77-8148-01 1 24645957 24645957 C A GRHL3 5'UTR 0.58 TCGA-77-8148-01 1 248112886 248112886 C T OR2L8 Missense_Mutation p.H243Y 0.36 deleterious(0) probably_damaging(0.998) TCGA-77-8148-01 1 248344055 248344055 G A OR2M2 Silent p.L256L 0.38 TCGA-77-8148-01 1 248344100 248344100 C A OR2M2 Missense_Mutation p.D271E 0.35 deleterious(0.02) benign(0.4) TCGA-77-8148-01 1 25667044 25667044 A G TMEM50A Missense_Mutation p.I23V 0.76 tolerated(0.75) benign(0.047) TCGA-77-8148-01 1 43296594 43296594 C T ERMAP Missense_Mutation p.R81W 0.11 deleterious(0.02) probably_damaging(0.954) TCGA-77-8148-01 1 44463119 44463119 C T SLC6A9 3'Flank 0.08 TCGA-77-8148-01 1 67147962 67147962 G A SGIP1 Missense_Mutation p.A409T 0.10 tolerated_low_confidence(0.06) probably_damaging(0.971) TCGA-77-8148-01 1 70790579 70790579 C G ANKRD13C Missense_Mutation p.W178C 0.65 deleterious(0) probably_damaging(1) TCGA-77-8148-01 1 89486393 89486393 C A GBP3 Missense_Mutation p.E4D 0.69 tolerated(0.18) benign(0.001) TCGA-77-8148-01 20 30365341 30365341 A T TPX2 Missense_Mutation p.H261L 0.39 deleterious(0) probably_damaging(0.999) TCGA-77-8148-01 20 31395791 31395791 C T DNMT3B 3'UTR 0.26 TCGA-77-8148-01 20 31685443 31685443 G A BPIFB4 Silent p.E473E 0.33 TCGA-77-8148-01 20 31815356 31815356 C T BPIFA3 Missense_Mutation p.A233V 0.28 tolerated_low_confidence(0.16) benign(0.011) TCGA-77-8148-01 20 3193818 3193818 G A ITPA Missense_Mutation p.V24I 0.10 tolerated(0.32) benign(0) TCGA-77-8148-01 20 3218312 3218312 C T SLC4A11 Intron 0.44 TCGA-77-8148-01 20 3652908 3652908 G T ADAM33 Silent p.G490G 0.32 TCGA-77-8148-01 20 37617550 37617550 C T DHX35 Missense_Mutation p.T147M 0.05 deleterious(0) probably_damaging(1) TCGA-77-8148-01 20 5081554 5081554 C A TMEM230 Silent p.V145V 0.43 TCGA-77-8148-01 20 56728623 56728623 C T C20orf85 Missense_Mutation p.S31L 0.04 tolerated(0.67) benign(0.02) TCGA-77-8148-01 20 58348442 58348442 C A PHACTR3 Missense_Mutation p.P287H 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-77-8148-01 21 10943001 10943001 G A TPTE Missense_Mutation p.L196F 0.06 tolerated(0.72) benign(0.133) TCGA-77-8148-01 21 47969702 47969702 G C DIP2A Silent p.V847V 0.20 TCGA-77-8148-01 22 27026512 27026512 C T CRYBA4 3'UTR 0.28 TCGA-77-8148-01 22 31484035 31484035 G A SMTN Missense_Mutation p.E46K 0.09 deleterious(0) probably_damaging(0.993) TCGA-77-8148-01 2 125671910 125671910 A T CNTNAP5 3'UTR 0.40 TCGA-77-8148-01 2 168100081 168100081 G A XIRP2 Missense_Mutation p.G727R 0.38 probably_damaging(0.983) TCGA-77-8148-01 2 169787220 169787220 G T ABCB11 Missense_Mutation p.S1122R 0.41 deleterious(0.02) probably_damaging(0.984) TCGA-77-8148-01 2 175677077 175677077 T C CHN1 Silent p.P282P 0.42 TCGA-77-8148-01 2 179457138 179457138 G T TTN Nonsense_Mutation p.S19865* 0.19 TCGA-77-8148-01 2 179466132 179466132 G A TTN Missense_Mutation p.P18531L 0.47 TCGA-77-8148-01 2 179613054 179613054 A T TTN Intron 0.33 TCGA-77-8148-01 2 179613653 179613653 C A TTN Intron 0.34 TCGA-77-8148-01 2 179632788 179632788 G T TTN Silent p.I3086I 0.35 TCGA-77-8148-01 2 181925516 181925516 C - UBE2E3 Frame_Shift_Del p.L169Ffs*2 0.30 TCGA-77-8148-01 2 182360569 182360569 C T ITGA4 Missense_Mutation p.T482M 0.07 deleterious(0.02) probably_damaging(1) TCGA-77-8148-01 2 185802538 185802538 C T ZNF804A Silent p.P805P 0.34 TCGA-77-8148-01 2 198950068 198950068 T G PLCL1 Nonsense_Mutation p.Y609* 0.49 TCGA-77-8148-01 2 29917755 29917755 C A ALK Missense_Mutation p.D305Y 0.41 deleterious(0) probably_damaging(0.916) TCGA-77-8148-01 2 32288992 32288992 C T SPAST Missense_Mutation p.P31L 0.40 deleterious_low_confidence(0.02) unknown(0) TCGA-77-8148-01 2 65299000 65299000 G T CEP68 Missense_Mutation p.G257V 0.44 tolerated(0.29) benign(0.045) TCGA-77-8148-01 2 74758036 74758036 A C HTRA2 Splice_Site p.X238_splice 0.28 TCGA-77-8148-01 2 74758039 74758039 A G HTRA2 Missense_Mutation p.E238G 0.29 tolerated(0.4) benign(0.174) TCGA-77-8148-01 2 84811311 84811311 G A DNAH6 Silent p.V806V 0.27 TCGA-77-8148-01 2 89034131 89034131 C T RPIA Silent p.G175G 0.43 TCGA-77-8148-01 2 89987078 89987078 C A IGKV2D-29 Missense_Mutation p.P120H 0.36 deleterious(0) probably_damaging(0.999) TCGA-77-8148-01 2 9618381 9618381 A C IAH1 Silent p.S55S 0.52 TCGA-77-8148-01 2 96963126 96963126 T A SNRNP200 Missense_Mutation p.K451M 0.37 deleterious(0) probably_damaging(0.928) TCGA-77-8148-01 2 98413828 98413828 C T TMEM131 Missense_Mutation p.R957K 0.38 deleterious(0) probably_damaging(0.986) TCGA-77-8148-01 3 108248161 108248161 G A MYH15 5'UTR 0.34 TCGA-77-8148-01 3 109049548 109049548 C T DPPA4 Missense_Mutation p.V168M 0.28 tolerated(0.12) possibly_damaging(0.888) TCGA-77-8148-01 3 122864969 122864969 C T PDIA5 Silent p.V335V 0.03 TCGA-77-8148-01 3 129247607 129247607 G A RHO Missense_Mutation p.V11M 0.20 deleterious(0.05) possibly_damaging(0.807) TCGA-77-8148-01 3 13399803 13399803 C T NUP210 Silent p.P749P 0.11 TCGA-77-8148-01 3 1369143 1369143 G A CNTN6 Silent p.E362E 0.63 TCGA-77-8148-01 3 147131155 147131155 C T ZIC1 Silent p.S387S 0.52 TCGA-77-8148-01 3 164908629 164908629 T A SLITRK3 5'UTR 0.60 TCGA-77-8148-01 3 170218991 170218991 C T SLC7A14 Missense_Mutation p.G150R 0.29 tolerated(0.06) probably_damaging(0.969) TCGA-77-8148-01 3 183547240 183547240 C A PARL 3'UTR 0.75 TCGA-77-8148-01 3 184290518 184290518 C G EPHB3 Missense_Mutation p.A137G 0.21 deleterious(0) benign(0.314) TCGA-77-8148-01 3 192516458 192516458 C T MB21D2 Missense_Mutation p.R398Q 0.08 tolerated(0.12) benign(0.301) TCGA-77-8148-01 3 37544797 37544797 G C ITGA9 Silent p.L247L 0.57 TCGA-77-8148-01 3 38390090 38390090 G A XYLB Missense_Mutation p.S36N 0.10 tolerated(0.46) benign(0.033) TCGA-77-8148-01 3 4508913 4508913 A T SUMF1 Missense_Mutation p.L6Q 0.55 tolerated_low_confidence(0.08) benign(0.232) TCGA-77-8148-01 3 62248560 62248560 A G PTPRG Missense_Mutation p.I883V 0.88 deleterious(0) probably_damaging(0.961) TCGA-77-8148-01 4 103553409 103553409 A T MANBA Missense_Mutation p.F815L 0.31 tolerated(0.1) benign(0.049) TCGA-77-8148-01 4 104054960 104054960 C G CENPE Missense_Mutation p.K2204N 0.15 probably_damaging(0.987) TCGA-77-8148-01 4 114199631 114199631 C A ANK2 Missense_Mutation p.L600I 0.33 probably_damaging(0.999) TCGA-77-8148-01 4 119203318 119203318 G C PRSS12 Missense_Mutation p.R801G 0.12 deleterious(0.03) benign(0.44) TCGA-77-8148-01 4 156135626 156135626 C G NPY2R Missense_Mutation p.L179V 0.54 tolerated(0.21) possibly_damaging(0.856) TCGA-77-8148-01 4 159091597 159091597 C A FAM198B Intron 0.41 TCGA-77-8148-01 4 178274876 178274876 C T NEIL3 Missense_Mutation p.S485F 0.13 deleterious(0.02) benign(0.265) TCGA-77-8148-01 4 24557886 24557886 T A DHX15 Missense_Mutation p.R283S 0.24 deleterious(0) probably_damaging(0.998) TCGA-77-8148-01 4 42895624 42895624 G T GRXCR1 Missense_Mutation p.S114I 0.23 deleterious(0.04) probably_damaging(0.997) TCGA-77-8148-01 4 44177182 44177182 C - KCTD8 Frame_Shift_Del p.T350Lfs*38 0.12 TCGA-77-8148-01 4 57871770 57871770 A G POLR2B Missense_Mutation p.M368V 0.33 deleterious(0.04) benign(0.12) TCGA-77-8148-01 4 66197818 66197818 G T EPHA5 Missense_Mutation p.P961T 0.30 tolerated(0.46) benign(0) TCGA-77-8148-01 4 66217258 66217258 G T EPHA5 Missense_Mutation p.A786E 0.18 deleterious(0) benign(0.319) TCGA-77-8148-01 4 87726483 87726483 G T PTPN13 Nonsense_Mutation p.E2241* 0.39 TCGA-77-8148-01 5 128368966 128368966 A C SLC27A6 Silent p.I617I 0.73 TCGA-77-8148-01 5 131007364 131007364 T A FNIP1 Missense_Mutation p.I925F 0.59 tolerated(0.39) benign(0.119) TCGA-77-8148-01 5 13753557 13753557 G T DNAH5 Silent p.R3553R 0.33 TCGA-77-8148-01 5 13753558 13753558 G C DNAH5 Silent p.A3552A 0.33 TCGA-77-8148-01 5 13817760 13817760 C G DNAH5 Silent p.A2295A 0.37 TCGA-77-8148-01 5 13865831 13865831 C T DNAH5 Nonsense_Mutation p.W1434* 0.30 TCGA-77-8148-01 5 140431651 140431651 C G PCDHB1 Missense_Mutation p.P199R 0.53 deleterious(0.02) probably_damaging(1) TCGA-77-8148-01 5 140562355 140562355 A G PCDHB16 Missense_Mutation p.H74R 0.58 tolerated_low_confidence(0.47) benign(0.02) TCGA-77-8148-01 5 147813231 147813231 G A FBXO38 Missense_Mutation p.V855I 0.70 tolerated(1) probably_damaging(0.976) TCGA-77-8148-01 5 149630366 149630366 G A CAMK2A Missense_Mutation p.S234L 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-77-8148-01 5 151047152 151047152 G - SPARC Frame_Shift_Del p.P154Lfs*7 0.34 TCGA-77-8148-01 5 151772034 151772034 G T NMUR2 Silent p.V322V 0.12 TCGA-77-8148-01 5 15500694 15500694 C A FBXL7 5'UTR 0.07 TCGA-77-8148-01 5 156679766 156679766 A T ITK 3'UTR 0.73 TCGA-77-8148-01 5 172659764 172659764 G A NKX2-5 Silent p.G261G 0.17 TCGA-77-8148-01 5 176719109 176719109 G - NSD1 Frame_Shift_Del p.C2138Sfs*12 0.38 TCGA-77-8148-01 5 32235141 32235141 A G MTMR12 Missense_Mutation p.L480S 0.35 deleterious(0) probably_damaging(0.972) TCGA-77-8148-01 5 32388725 32388725 G T ZFR Missense_Mutation p.T733N 0.27 tolerated(0.06) unknown(0) TCGA-77-8148-01 5 33891926 33891926 A G ADAMTS12 Silent p.L12L 0.35 TCGA-77-8148-01 5 79854376 79854376 G A ANKRD34B Missense_Mutation p.P488L 0.65 tolerated(0.05) benign(0.263) TCGA-77-8148-01 6 114378509 114378509 G C HS3ST5 Missense_Mutation p.P318R 0.26 tolerated(0.07) benign(0.013) TCGA-77-8148-01 6 118786470 118786470 C G CEP85L 3'UTR 0.25 TCGA-77-8148-01 6 132206121 132206121 A G ENPP1 Missense_Mutation p.R788G 0.36 deleterious(0.01) possibly_damaging(0.836) TCGA-77-8148-01 6 132211592 132211592 C T ENPP1 Missense_Mutation p.P907S 0.24 tolerated(0.43) benign(0.034) TCGA-77-8148-01 6 26093173 26093173 C T HFE Missense_Mutation p.L293F 0.08 deleterious(0.03) possibly_damaging(0.892) TCGA-77-8148-01 6 28963104 28963104 C A ZNF311 Missense_Mutation p.V559L 0.77 tolerated(0.28) benign(0.119) TCGA-77-8148-01 6 29342706 29342706 C G OR12D3 Missense_Mutation p.R120P 0.71 deleterious(0) probably_damaging(0.987) TCGA-77-8148-01 6 30881615 30881615 A T GTF2H4 Missense_Mutation p.Q415L 0.68 deleterious(0.03) benign(0.179) TCGA-77-8148-01 6 32940674 32940674 A C BRD2 5'UTR 0.23 TCGA-77-8148-01 6 41712485 41712485 C T PGC Missense_Mutation p.E41K 0.24 tolerated(0.16) benign(0.034) TCGA-77-8148-01 6 44929534 44929534 G A SUPT3H Missense_Mutation p.S190L 0.24 tolerated(0.2) benign(0.01) TCGA-77-8148-01 6 54804512 54804512 G T FAM83B Missense_Mutation p.W248L 0.27 deleterious(0) probably_damaging(1) TCGA-77-8148-01 6 56374673 56374673 T A DST Splice_Site p.X3638_splice 0.35 TCGA-77-8148-01 6 70037751 70037751 C A BAI3 Missense_Mutation p.T1002N 0.39 deleterious(0) probably_damaging(0.998) TCGA-77-8148-01 6 70964198 70964198 G T COL9A1 Missense_Mutation p.A567E 0.33 possibly_damaging(0.563) TCGA-77-8148-01 6 76550336 76550336 G T MYO6 Missense_Mutation p.K196N 0.36 deleterious(0) unknown(0) TCGA-77-8148-01 6 96651297 96651297 A T FUT9 Missense_Mutation p.Q89L 0.47 tolerated(0.11) benign(0.004) TCGA-77-8148-01 7 100691319 100691319 G A MUC17 Nonsense_Mutation p.W4153* 0.46 TCGA-77-8148-01 7 102106334 102106334 G A LRWD1 Missense_Mutation p.E51K 0.04 tolerated(0.56) probably_damaging(0.999) TCGA-77-8148-01 7 107824911 107824911 C G NRCAM Missense_Mutation p.G728A 0.31 deleterious(0) benign(0.147) TCGA-77-8148-01 7 130370167 130370167 A G TSGA13 5'UTR 0.28 TCGA-77-8148-01 7 136699730 136699730 G C CHRM2 Missense_Mutation p.G40R 0.40 deleterious(0) probably_damaging(1) TCGA-77-8148-01 7 136699887 136699887 G T CHRM2 Missense_Mutation p.G92V 0.46 deleterious(0) probably_damaging(1) TCGA-77-8148-01 7 136700122 136700122 T A CHRM2 Silent p.T170T 0.41 TCGA-77-8148-01 7 149486757 149486757 T C SSPO RNA 0.21 TCGA-77-8148-01 7 151962193 151962193 C A KMT2C Missense_Mutation p.D372Y 0.04 probably_damaging(0.982) TCGA-77-8148-01 7 154143308 154143308 G T DPP6 Missense_Mutation p.G85W 0.30 deleterious(0) probably_damaging(1) TCGA-77-8148-01 7 154379755 154379755 C G DPP6 Intron 0.30 TCGA-77-8148-01 7 156974913 156974913 C T UBE3C Silent p.Y294Y 0.18 TCGA-77-8148-01 7 16341066 16341066 G A ISPD Missense_Mutation p.A272V 0.35 deleterious(0.01) possibly_damaging(0.668) TCGA-77-8148-01 7 21775355 21775355 G T DNAH11 Missense_Mutation p.G2520V 0.45 probably_damaging(0.986) TCGA-77-8148-01 7 28997532 28997532 C A AC005013.5 Intron 0.40 TCGA-77-8148-01 7 41729761 41729761 G T INHBA Silent p.L256L 0.37 TCGA-77-8148-01 7 56062592 56062592 G T GBAS Missense_Mutation p.R208L 0.61 deleterious(0) probably_damaging(0.987) TCGA-77-8148-01 7 72732914 72732914 C A TRIM50 Missense_Mutation p.Q211H 0.39 deleterious(0.04) benign(0.03) TCGA-77-8148-01 7 89793922 89793922 A G STEAP1 Silent p.P298P 0.07 TCGA-77-8148-01 7 94147609 94147609 C - CASD1 Frame_Shift_Del p.Q110Nfs*35 0.27 TCGA-77-8148-01 7 95222168 95222168 A G PDK4 Missense_Mutation p.C145R 0.39 tolerated(0.25) benign(0.078) TCGA-77-8148-01 8 114290833 114290833 C A CSMD3 Missense_Mutation p.V168L 0.22 tolerated(0.56) benign(0.014) TCGA-77-8148-01 8 118541045 118541045 C T MED30 Silent p.V111V 0.04 TCGA-77-8148-01 8 124360510 124360510 G C ATAD2 Missense_Mutation p.R604G 0.50 deleterious(0) probably_damaging(0.997) TCGA-77-8148-01 8 135533178 135533178 T C ZFAT Missense_Mutation p.K1061R 0.68 deleterious(0.01) probably_damaging(0.997) TCGA-77-8148-01 8 139890550 139890550 C A COL22A1 Missense_Mutation p.S34I 0.38 unknown(0) TCGA-77-8148-01 8 143958487 143958487 T A CYP11B1 Missense_Mutation p.S183C 0.48 deleterious(0.03) benign(0.248) TCGA-77-8148-01 8 144464097 144464097 C T RHPN1 Nonsense_Mutation p.Q586* 0.62 TCGA-77-8148-01 8 144887347 144887347 C A SCRIB Nonsense_Mutation p.E869* 0.62 TCGA-77-8148-01 8 3216814 3216814 C A CSMD1 Missense_Mutation p.R1055L 0.65 probably_damaging(0.999) TCGA-77-8148-01 8 39618765 39618765 G T ADAM2 Missense_Mutation p.L515I 0.22 tolerated(0.85) benign(0.059) TCGA-77-8148-01 8 42591700 42591700 T C CHRNB3 Missense_Mutation p.V439A 0.41 deleterious(0) possibly_damaging(0.617) TCGA-77-8148-01 8 53092750 53092750 C A ST18 Missense_Mutation p.C70F 0.34 tolerated(0.05) benign(0.003) TCGA-77-8148-01 8 54793540 54793540 C T RGS20 Intron 0.33 TCGA-77-8148-01 8 71646144 71646144 A G XKR9 Missense_Mutation p.I203V 0.35 tolerated(0.45) benign(0.001) TCGA-77-8148-01 8 72755936 72755936 G A MSC Missense_Mutation p.R160W 0.07 deleterious(0) probably_damaging(0.997) TCGA-77-8148-01 8 77767203 77767203 C A ZFHX4 Silent p.A2682A 0.38 TCGA-77-8148-01 8 77776199 77776199 G A ZFHX4 Missense_Mutation p.A3417T 0.35 probably_damaging(0.992) TCGA-77-8148-01 8 8559933 8559933 C T CLDN23 Silent p.L9L 0.78 TCGA-77-8148-01 8 92983017 92983017 C G RUNX1T1 Missense_Mutation p.E481Q 0.42 tolerated(0.24) benign(0.222) TCGA-77-8148-01 9 101006367 101006367 T - TBC1D2 Frame_Shift_Del p.T186Hfs*5 0.26 TCGA-77-8148-01 9 107602587 107602587 C A ABCA1 Missense_Mutation p.A343S 0.19 tolerated(0.86) benign(0.001) TCGA-77-8148-01 9 114137450 114137450 G A KIAA0368 Silent p.G1529G 0.08 TCGA-77-8148-01 9 116835204 116835204 C A AMBP Splice_Site p.X186_splice 0.33 TCGA-77-8148-01 9 123007305 123007305 G T MIR147A RNA 0.37 TCGA-77-8148-01 9 126202749 126202749 C A DENND1A Missense_Mutation p.A460S 0.22 tolerated(1) benign(0.021) TCGA-77-8148-01 9 134183596 134183596 C T PPAPDC3 Silent p.I246I 0.39 TCGA-77-8148-01 9 135462759 135462760 - C BARHL1 Frame_Shift_Ins p.V173Gfs*60 0.48 TCGA-77-8148-01 9 136634585 136634585 C A VAV2 Missense_Mutation p.Q796H 0.50 tolerated(0.08) possibly_damaging(0.553) TCGA-77-8148-01 9 34372788 34372788 T C KIAA1161 Missense_Mutation p.K18E 0.66 tolerated_low_confidence(0.07) benign(0.371) TCGA-77-8148-01 9 35609162 35609162 G A TESK1 Missense_Mutation p.C435Y 0.63 deleterious(0) probably_damaging(0.997) TCGA-77-8148-01 9 40704351 40704351 C G SPATA31A3 Missense_Mutation p.H670D 0.41 tolerated(0.56) benign(0.111) TCGA-77-8148-01 9 84530810 84530810 A T SPATA31D5P RNA 0.36 TCGA-77-8148-01 9 84606753 84606753 C G SPATA31D1 Silent p.T456T 0.30 TCGA-77-8148-01 9 91793286 91793286 G T SHC3 Silent p.G30G 0.04 TCGA-77-8148-01 X 123019611 123019611 T A XIAP Missense_Mutation p.F33L 0.84 deleterious(0) probably_damaging(0.954) TCGA-77-8148-01 X 128913991 128913991 G A SASH3 5'UTR 0.80 TCGA-77-8148-01 X 147088352 147088352 A G FMR1NB Silent p.P176P 0.33 TCGA-77-8148-01 X 26212237 26212237 A T MAGEB6 Nonsense_Mutation p.K92* 0.08 TCGA-77-8148-01 X 27765871 27765871 A T DCAF8L2 Missense_Mutation p.T287S 0.64 tolerated(0.43) benign(0.097) TCGA-77-8148-01 X 35820665 35820665 G T MAGEB16 Missense_Mutation p.A118S 1.00 tolerated(0.19) benign(0.346) TCGA-77-8148-01 X 36007630 36007630 G A CXorf22 Missense_Mutation p.V970M 0.60 deleterious_low_confidence(0.01) benign(0.41) TCGA-77-8148-01 X 37663370 37663370 T C CYBB Missense_Mutation p.W380R 0.14 tolerated(0.39) benign(0.01) TCGA-77-8148-01 X 71359190 71359190 C A NHSL2 Missense_Mutation p.P598T 0.75 deleterious(0.04) probably_damaging(1) TCGA-77-8148-01 X 79286076 79286076 C T TBX22 Silent p.C343C 0.65 TCGA-77-8148-01 X 90691033 90691033 G T PABPC5 Missense_Mutation p.D153Y 0.72 deleterious(0) probably_damaging(0.916) TCGA-77-8148-01 X 91873388 91873388 C T PCDH11X Nonsense_Mutation p.Q1165* 0.71 TCGA-77-8150-01 10 134041548 134041548 C T STK32C Missense_Mutation p.V135I 0.20 tolerated(0.06) possibly_damaging(0.773) TCGA-77-8150-01 10 15714737 15714737 T A ITGA8 Missense_Mutation p.T230S 0.28 tolerated(1) benign(0.081) TCGA-77-8150-01 10 26518704 26518704 C T GAD2 Missense_Mutation p.H280Y 0.39 deleterious(0.03) possibly_damaging(0.839) TCGA-77-8150-01 10 50966550 50966550 C T OGDHL Missense_Mutation p.R30H 0.10 tolerated(0.09) benign(0.001) TCGA-77-8150-01 10 67680101 67680101 C G CTNNA3 Missense_Mutation p.R892T 0.32 deleterious_low_confidence(0.01) unknown(0) TCGA-77-8150-01 10 7776921 7776921 T A ITIH2 Silent p.I608I 0.25 TCGA-77-8150-01 10 95372727 95372727 G A PDE6C Missense_Mutation p.R82K 0.12 tolerated(1) benign(0.004) TCGA-77-8150-01 10 99433477 99433478 - G PI4K2A Frame_Shift_Ins p.P444Afs*? 0.14 TCGA-77-8150-01 11 107944129 107944129 T C CUL5 Missense_Mutation p.Y340H 0.29 deleterious(0) probably_damaging(1) TCGA-77-8150-01 11 117306489 117306493 GAGCA - DSCAML1 Frame_Shift_Del p.A1642Rfs*2 0.33 TCGA-77-8150-01 11 1261166 1261166 C A MUC5B Missense_Mutation p.Q1241K 0.27 unknown(0) TCGA-77-8150-01 11 30930607 30930607 A G DCDC1 Silent p.N1268N 0.12 TCGA-77-8150-01 11 55587917 55587917 C A OR5D18 Missense_Mutation p.T271K 0.45 tolerated(0.16) benign(0.213) TCGA-77-8150-01 11 57244154 57244154 T C RTN4RL2 Missense_Mutation p.S345P 0.14 tolerated(0.08) benign(0.446) TCGA-77-8150-01 11 5862330 5862330 G T OR52E6 Silent p.G266G 0.23 TCGA-77-8150-01 11 6519711 6519711 G C DNHD1 Missense_Mutation p.G89A 0.30 benign(0.11) TCGA-77-8150-01 11 75134796 75134796 G T KLHL35 Silent p.I501I 0.18 TCGA-77-8150-01 11 76371233 76371233 C T LRRC32 Silent p.L468L 0.17 TCGA-77-8150-01 12 101504227 101504227 T - ANO4 Frame_Shift_Del p.L697Qfs*8 0.27 TCGA-77-8150-01 12 110890868 110890868 C A GPN3 Nonsense_Mutation p.E315* 0.45 TCGA-77-8150-01 12 113865783 113865783 C G SDSL 5'UTR 0.30 TCGA-77-8150-01 12 133311085 133311085 G T ANKLE2 Missense_Mutation p.Q593K 0.51 tolerated(0.11) possibly_damaging(0.601) TCGA-77-8150-01 12 27835552 27835552 G A PPFIBP1 Nonsense_Mutation p.W727* 0.61 TCGA-77-8150-01 12 40671946 40671946 A T LRRK2 Missense_Mutation p.L708F 0.38 tolerated(0.14) possibly_damaging(0.675) TCGA-77-8150-01 12 49443905 49443906 CC TAA KMT2D Nonsense_Mutation p.D1156* 0.35 TCGA-77-8150-01 12 66597652 66597652 A G IRAK3 Missense_Mutation p.I99V 0.22 tolerated(0.3) benign(0.075) TCGA-77-8150-01 13 113803629 113803629 C A F10 Missense_Mutation p.P422Q 0.62 deleterious(0) probably_damaging(1) TCGA-77-8150-01 14 102449719 102449720 - TTAT DYNC1H1 Frame_Shift_Ins p.M413Ifs*7 0.29 TCGA-77-8150-01 14 103986251 103986251 G A CKB Missense_Mutation p.R366W 0.14 deleterious(0.03) benign(0.031) TCGA-77-8150-01 14 105818795 105818797 CTC - PACS2 In_Frame_Del p.S97del 0.15 TCGA-77-8150-01 14 106866648 106866649 - C IGHV3-38 Frame_Shift_Ins p.S36Vfs*15 0.15 TCGA-77-8150-01 14 23885339 23885339 G A MYH7 Silent p.N1609N 0.38 TCGA-77-8150-01 14 47120600 47120600 C A RPL10L Missense_Mutation p.G114C 0.32 deleterious(0) probably_damaging(0.999) TCGA-77-8150-01 14 47351270 47351270 G T MDGA2 Missense_Mutation p.T798K 0.15 deleterious(0.01) possibly_damaging(0.603) TCGA-77-8150-01 14 51372265 51372265 C A PYGL Missense_Mutation p.A797S 0.46 tolerated(0.19) benign(0.135) TCGA-77-8150-01 14 63447754 63447754 C A KCNH5 Missense_Mutation p.V260F 0.09 deleterious(0.02) possibly_damaging(0.907) TCGA-77-8150-01 14 63447755 63447755 C A KCNH5 Silent p.L259L 0.09 TCGA-77-8150-01 14 92588046 92588046 C A NDUFB1 Missense_Mutation p.A26S 0.47 tolerated_low_confidence(0.2) possibly_damaging(0.567) TCGA-77-8150-01 14 93118183 93118183 G A RIN3 Silent p.P263P 0.50 TCGA-77-8150-01 15 45415229 45415230 - G DUOXA1 5'UTR 0.32 TCGA-77-8150-01 15 48566838 48566838 C A SLC12A1 Missense_Mutation p.L825I 0.29 tolerated(0.16) benign(0.223) TCGA-77-8150-01 15 53908045 53908059 TACTTTTCTTGATGG - WDR72 In_Frame_Del p.P782_V786del 0.14 TCGA-77-8150-01 15 64966432 64966432 G A ZNF609 Missense_Mutation p.S460N 0.26 tolerated(0.35) benign(0.011) TCGA-77-8150-01 15 70356792 70356792 C A TLE3 Splice_Site p.X198_splice 0.31 TCGA-77-8150-01 15 79092618 79092618 G T ADAMTS7 Missense_Mutation p.H124Q 0.38 tolerated(0.09) benign(0.014) TCGA-77-8150-01 15 82337972 82337972 T C MEX3B Silent p.G25G 0.11 TCGA-77-8150-01 16 10995945 10995945 G T CIITA Missense_Mutation p.D178Y 0.28 deleterious(0.02) benign(0.421) TCGA-77-8150-01 16 29819900 29819900 G A MAZ Missense_Mutation p.A373T 0.30 deleterious(0.01) benign(0.299) TCGA-77-8150-01 16 29825878 29825878 C T PRRT2 Silent p.S368S 0.31 TCGA-77-8150-01 16 30536354 30536354 G A ZNF768 Silent p.H369H 0.43 TCGA-77-8150-01 16 68023978 68023978 G T DPEP2 Missense_Mutation p.N322K 0.16 tolerated(0.18) possibly_damaging(0.686) TCGA-77-8150-01 17 21825544 21825544 C G FAM27L RNA 0.17 TCGA-77-8150-01 17 29661949 29661950 AA - NF1 Frame_Shift_Del p.R1970Sfs*6 0.30 TCGA-77-8150-01 17 37579603 37579603 T A MED1 Missense_Mutation p.N358Y 0.71 deleterious(0.01) probably_damaging(0.912) TCGA-77-8150-01 17 40820313 40820313 C A PLEKHH3 Missense_Mutation p.E738D 0.35 tolerated(0.25) probably_damaging(0.97) TCGA-77-8150-01 17 7193781 7193781 C T YBX2 Missense_Mutation p.R178H 0.69 tolerated(0.08) possibly_damaging(0.522) TCGA-77-8150-01 17 7577580 7577580 T C TP53 Missense_Mutation p.Y234C 0.75 deleterious(0) probably_damaging(0.992) TCGA-77-8150-01 17 9694569 9694569 C A DHRS7C Silent p.L11L 0.61 TCGA-77-8150-01 19 15067415 15067415 C T SLC1A6 Missense_Mutation p.V348M 0.43 tolerated(0.1) benign(0.141) TCGA-77-8150-01 19 19389580 19389580 C A SUGP1 Missense_Mutation p.M518I 0.35 deleterious(0.01) benign(0.133) TCGA-77-8150-01 19 36054286 36054286 A T ATP4A Silent p.I52I 0.30 TCGA-77-8150-01 19 51361396 51361396 G A KLK3 Silent p.L106L 0.21 TCGA-77-8150-01 19 53484173 53484173 C A ZNF702P RNA 0.56 TCGA-77-8150-01 19 55047048 55047048 G C KIR3DX1 Missense_Mutation p.C198S 0.30 tolerated(1) benign(0.004) TCGA-77-8150-01 19 55525969 55525969 T A GP6 Silent p.I448I 0.21 TCGA-77-8150-01 1 107691177 107691177 T C NTNG1 5'UTR 0.45 TCGA-77-8150-01 1 110737349 110737349 C A SLC6A17 Missense_Mutation p.T483K 0.28 deleterious(0.01) probably_damaging(0.99) TCGA-77-8150-01 1 1372774 1372774 G A VWA1 Missense_Mutation p.A181T 0.10 deleterious(0.02) possibly_damaging(0.733) TCGA-77-8150-01 1 152275932 152275932 G A FLG Silent p.S3810S 0.35 TCGA-77-8150-01 1 152659406 152659406 C T LCE2B Silent p.P29P 0.44 TCGA-77-8150-01 1 157490910 157490910 G T FCRL5 Silent p.S804S 0.13 TCGA-77-8150-01 1 158390384 158390384 G T OR10K2 Silent p.T91T 0.36 TCGA-77-8150-01 1 161166452 161166452 A T ADAMTS4 Missense_Mutation p.S284R 0.22 deleterious(0) possibly_damaging(0.692) TCGA-77-8150-01 1 177199015 177199015 G A BRINP2 Translation_Start_Site p.M1? 0.15 deleterious_low_confidence(0) benign(0.107) TCGA-77-8150-01 1 192778178 192778178 C T RGS2 5'UTR 0.22 TCGA-77-8150-01 1 196927058 196927058 C A CFHR2 Missense_Mutation p.D156E 0.10 tolerated(0.39) benign(0.112) TCGA-77-8150-01 1 213251083 213251083 G T RPS6KC1 Nonsense_Mutation p.E63* 0.23 TCGA-77-8150-01 1 216373190 216373190 G C USH2A Missense_Mutation p.S1197C 0.58 possibly_damaging(0.778) TCGA-77-8150-01 1 222721069 222721069 G T HHIPL2 Nonsense_Mutation p.C106* 0.14 TCGA-77-8150-01 1 22915385 22915385 A T EPHA8 Missense_Mutation p.N334I 0.32 deleterious(0) possibly_damaging(0.787) TCGA-77-8150-01 1 230401030 230401030 G T GALNT2 Nonsense_Mutation p.G453* 0.26 TCGA-77-8150-01 1 248437096 248437096 G T OR2T33 Silent p.T7T 0.16 TCGA-77-8150-01 1 68592016 68592016 C T WLS Intron 0.44 TCGA-77-8150-01 1 75626510 75626510 C T LHX8 Missense_Mutation p.S334L 0.53 tolerated(0.21) benign(0.001) TCGA-77-8150-01 1 7725170 7725170 G T CAMTA1 Missense_Mutation p.A855S 0.59 tolerated_low_confidence(0.08) benign(0.007) TCGA-77-8150-01 20 30729666 30729666 G T TM9SF4 Missense_Mutation p.G166C 0.28 deleterious(0) probably_damaging(1) TCGA-77-8150-01 21 30701944 30701945 TT - BACH1 Frame_Shift_Del p.I569Sfs*11 0.40 TCGA-77-8150-01 22 35661204 35661204 G A HMGXB4 Missense_Mutation p.A275T 0.06 tolerated_low_confidence(0.32) benign(0.001) TCGA-77-8150-01 22 44514978 44514978 G C PARVB Missense_Mutation p.E145Q 0.29 tolerated(0.12) benign(0.187) TCGA-77-8150-01 2 103095410 103095410 G A SLC9A4 Silent p.P123P 0.37 TCGA-77-8150-01 2 128522839 128522839 G A WDR33 Missense_Mutation p.T128I 0.17 deleterious(0) unknown(0) TCGA-77-8150-01 2 135745311 135745311 G T MAP3K19 Silent p.A377A 0.48 TCGA-77-8150-01 2 178370254 178370254 A G AGPS Missense_Mutation p.D499G 0.46 tolerated(0.07) benign(0.01) TCGA-77-8150-01 2 179554548 179554548 G T TTN Missense_Mutation p.P10613Q 0.36 TCGA-77-8150-01 2 186696577 186696577 G C FSIP2 Missense_Mutation p.G6941A 0.24 benign(0.12) TCGA-77-8150-01 2 207559565 207559565 G A DYTN Silent p.C252C 0.65 TCGA-77-8150-01 2 224746699 224746699 G A WDFY1 Missense_Mutation p.R342W 0.12 deleterious(0) probably_damaging(0.995) TCGA-77-8150-01 2 225379345 225379345 C T CUL3 Missense_Mutation p.G175R 0.46 deleterious(0) probably_damaging(0.999) TCGA-77-8150-01 2 228195542 228195542 C T MFF Missense_Mutation p.P80L 0.30 deleterious(0.05) possibly_damaging(0.801) TCGA-77-8150-01 2 25966989 25966989 A T ASXL2 Silent p.G739G 0.22 TCGA-77-8150-01 2 40656218 40656218 A T SLC8A1 Silent p.T401T 0.38 TCGA-77-8150-01 3 101575932 101575932 C T NFKBIZ Missense_Mutation p.R614C 0.24 deleterious(0) probably_damaging(0.995) TCGA-77-8150-01 3 111394159 111394159 G A PLCXD2 Missense_Mutation p.G23R 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-77-8150-01 3 127413993 127413993 C T MGLL Missense_Mutation p.G214E 0.18 deleterious(0) probably_damaging(0.982) TCGA-77-8150-01 3 130442255 130442255 T G PIK3R4 Intron 0.18 TCGA-77-8150-01 3 146239707 146239707 C T PLSCR1 Silent p.R163R 0.27 TCGA-77-8150-01 3 14708332 14708332 A - CCDC174 Frame_Shift_Del p.T203Pfs*7 0.21 TCGA-77-8150-01 3 164906503 164906503 G T SLITRK3 Missense_Mutation p.H706N 0.24 tolerated(0.97) benign(0.403) TCGA-77-8150-01 3 178560660 178560660 G C KCNMB2 Missense_Mutation p.A215P 0.53 tolerated(0.11) probably_damaging(0.999) TCGA-77-8150-01 3 178951955 178951955 A G PIK3CA Missense_Mutation p.M1004V 0.28 deleterious(0.01) possibly_damaging(0.578) TCGA-77-8150-01 3 179131247 179131247 A T GNB4 Missense_Mutation p.C218S 0.19 tolerated(0.07) probably_damaging(0.917) TCGA-77-8150-01 3 182584191 182584210 TCTTCACCAGATGAAAAGGC - ATP11B Frame_Shift_Del p.P529Rfs*15 0.16 TCGA-77-8150-01 3 49163258 49163258 A G LAMB2 Missense_Mutation p.C804R 0.53 deleterious(0) probably_damaging(1) TCGA-77-8150-01 3 97596279 97596279 T G CRYBG3 Missense_Mutation p.Y133D 0.26 deleterious(0) probably_damaging(0.92) TCGA-77-8150-01 4 123268709 123268709 G T KIAA1109 Missense_Mutation p.G4302W 0.39 probably_damaging(0.913) TCGA-77-8150-01 4 125590363 125590363 T A ANKRD50 Nonsense_Mutation p.K1357* 0.65 TCGA-77-8150-01 4 169229286 169229286 T C DDX60 Silent p.S45S 0.62 TCGA-77-8150-01 4 186383818 186383818 C A CCDC110 Missense_Mutation p.Q72H 0.21 deleterious(0) probably_damaging(0.999) TCGA-77-8150-01 4 87745009 87745009 C T SLC10A6 Silent p.K322K 0.40 TCGA-77-8150-01 5 176638986 176638986 G T NSD1 Missense_Mutation p.V1196L 0.67 tolerated_low_confidence(0.55) benign(0.001) TCGA-77-8150-01 5 31424539 31424539 G C DROSHA Missense_Mutation p.L1086V 0.08 deleterious(0.02) benign(0.323) TCGA-77-8150-01 6 129807704 129807704 G C LAMA2 Missense_Mutation p.R2612T 0.48 deleterious(0.02) possibly_damaging(0.639) TCGA-77-8150-01 6 136268632 136268632 G A PDE7B Missense_Mutation p.D18N 0.46 deleterious_low_confidence(0.03) benign(0.157) TCGA-77-8150-01 6 138601260 138601260 G T KIAA1244 Missense_Mutation p.S807I 0.23 deleterious(0.04) possibly_damaging(0.548) TCGA-77-8150-01 6 157431603 157431603 C A ARID1B Intron 0.33 TCGA-77-8150-01 6 18200796 18200796 A T KDM1B Missense_Mutation p.M318L 0.36 tolerated_low_confidence(0.12) unknown(0) TCGA-77-8150-01 6 28297080 28297080 C T ZSCAN31 Silent p.Q127Q 0.37 TCGA-77-8150-01 6 29054548 29054548 A G OR2B3 Missense_Mutation p.S160P 0.14 deleterious(0.03) probably_damaging(0.985) TCGA-77-8150-01 6 38718259 38718259 G T DNAH8 Missense_Mutation p.R217L 0.55 benign(0.319) TCGA-77-8150-01 6 50791197 50791197 C T TFAP2B Silent p.S53S 0.42 TCGA-77-8150-01 6 66094394 66094394 C G EYS Splice_Site p.X395_splice 0.50 TCGA-77-8150-01 6 71138116 71138116 A T FAM135A Missense_Mutation p.Q24L 0.37 deleterious(0) possibly_damaging(0.821) TCGA-77-8150-01 6 87797870 87797870 C G CGA Missense_Mutation p.V17L 0.19 tolerated(0.23) possibly_damaging(0.785) TCGA-77-8150-01 6 90398443 90398443 G T MDN1 Nonsense_Mutation p.S3703* 0.51 TCGA-77-8150-01 6 96054023 96054023 C G MANEA Missense_Mutation p.I377M 0.48 tolerated(0.09) possibly_damaging(0.531) TCGA-77-8150-01 7 107707008 107707008 T C LAMB4 Silent p.V828V 0.43 TCGA-77-8150-01 7 108155332 108155332 C A PNPLA8 Missense_Mutation p.D202Y 0.57 deleterious(0) benign(0.206) TCGA-77-8150-01 7 123594409 123594409 C G SPAM1 Missense_Mutation p.S262C 0.18 deleterious(0) probably_damaging(0.999) TCGA-77-8150-01 7 136700795 136700795 G T CHRM2 Missense_Mutation p.A395S 0.24 deleterious(0) probably_damaging(0.999) TCGA-77-8150-01 7 154587591 154587591 C A DPP6 Missense_Mutation p.Q433K 0.27 tolerated(0.05) probably_damaging(1) TCGA-77-8150-01 7 26765147 26765147 C T SKAP2 Silent p.E232E 0.17 TCGA-77-8150-01 7 35675034 35675034 C A HERPUD2 Missense_Mutation p.V218F 0.19 tolerated(0.12) benign(0.089) TCGA-77-8150-01 7 37780343 37780343 C G GPR141 Missense_Mutation p.I116M 0.34 tolerated(0.05) possibly_damaging(0.547) TCGA-77-8150-01 7 91737895 91737895 T A AKAP9 Missense_Mutation p.D3878E 0.20 probably_damaging(0.998) TCGA-77-8150-01 7 99246003 99246003 C T CYP3A5 Silent p.T478T 0.49 TCGA-77-8150-01 8 109241344 109241344 T C EIF3E Silent p.A184A 0.36 TCGA-77-8150-01 8 124266052 124266052 C T ZHX1 Missense_Mutation p.R712H 0.24 deleterious(0) probably_damaging(1) TCGA-77-8150-01 8 134030117 134030117 T A TG Silent p.G2219G 0.39 TCGA-77-8150-01 8 140631024 140631024 C A KCNK9 Missense_Mutation p.G201V 0.42 deleterious(0) probably_damaging(0.998) TCGA-77-8150-01 8 14181643 14181643 G T SGCZ Missense_Mutation p.P102Q 0.27 deleterious(0) probably_damaging(0.984) TCGA-77-8150-01 8 1497012 1497012 G A DLGAP2 Silent p.G51G 0.60 TCGA-77-8150-01 8 24181497 24181497 G T ADAM28 Missense_Mutation p.D291Y 0.41 deleterious(0) probably_damaging(1) TCGA-77-8150-01 8 30889821 30889821 A C PURG Missense_Mutation p.S160A 0.26 tolerated(0.36) probably_damaging(0.992) TCGA-77-8150-01 8 37602126 37602126 C A ERLIN2 Missense_Mutation p.D112E 0.32 tolerated(0.14) benign(0.012) TCGA-77-8150-01 8 88886058 88886058 C A DCAF4L2 Nonsense_Mutation p.E48* 0.37 TCGA-77-8150-01 9 119858331 119858331 C T ASTN2 Missense_Mutation p.R372H 0.27 deleterious(0.01) unknown(0) TCGA-77-8150-01 9 130678768 130678768 G C ST6GALNAC4 5'UTR 0.47 TCGA-77-8150-01 9 140115231 140115231 G C RNF208 Missense_Mutation p.T145S 0.32 deleterious(0.02) possibly_damaging(0.73) TCGA-77-8150-01 9 79321296 79321296 G A PRUNE2 Missense_Mutation p.P1965L 0.47 tolerated(0.07) benign(0.028) TCGA-77-8150-01 9 84606437 84606437 T A SPATA31D1 Missense_Mutation p.L351H 0.38 deleterious(0.01) possibly_damaging(0.83) TCGA-77-8150-01 9 90501213 90501213 C T SPATA31E1 Missense_Mutation p.P604L 0.32 tolerated(0.36) benign(0.119) TCGA-77-8150-01 9 97209206 97209206 C G HIATL1 Silent p.L277L 0.46 TCGA-77-8150-01 X 47308110 47308111 TT - ZNF41 Frame_Shift_Del p.K353Tfs*6 0.43 TCGA-77-8153-01 10 105162880 105162880 G T PDCD11 Silent p.L80L 0.61 TCGA-77-8153-01 10 46274579 46274579 G A FAM21C Missense_Mutation p.G825E 0.51 tolerated(0.24) benign(0.033) TCGA-77-8153-01 10 49482627 49482627 C A FRMPD2 5'UTR 0.56 TCGA-77-8153-01 10 52834343 52834343 G C PRKG1 5'UTR 0.70 TCGA-77-8153-01 11 44075005 44075005 G A ACCSL Missense_Mutation p.G333D 0.56 deleterious(0) probably_damaging(0.997) TCGA-77-8153-01 11 46403576 46403576 C A MDK Intron 0.42 TCGA-77-8153-01 11 48327795 48327795 G T OR4S1 Silent p.V7V 0.32 TCGA-77-8153-01 11 50003848 50003848 G T OR4C12 Missense_Mutation p.L64I 0.29 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-77-8153-01 11 56185488 56185488 G C OR5R1 Missense_Mutation p.S74C 0.05 deleterious(0) probably_damaging(0.998) TCGA-77-8153-01 11 7111354 7111354 C T RBMXL2 Missense_Mutation p.R335C 0.66 tolerated(0.18) benign(0.022) TCGA-77-8153-01 11 71948621 71948621 G A INPPL1 Silent p.G1111G 0.12 TCGA-77-8153-01 11 78176999 78176999 G T NARS2 Missense_Mutation p.P363T 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-77-8153-01 11 78467972 78467972 G C TENM4 Missense_Mutation p.I878M 0.39 deleterious(0) possibly_damaging(0.862) TCGA-77-8153-01 11 85435186 85435186 C A SYTL2 Missense_Mutation p.A772S 0.33 tolerated(0.11) benign(0.307) TCGA-77-8153-01 12 108145800 108145800 T C PRDM4 Missense_Mutation p.H173R 0.28 tolerated_low_confidence(0.06) probably_damaging(0.977) TCGA-77-8153-01 12 109017914 109017914 G A SELPLG Missense_Mutation p.T73M 0.36 deleterious(0) unknown(0) TCGA-77-8153-01 12 117657912 117657912 C G NOS1 Missense_Mutation p.E1414Q 0.29 tolerated(0.15) probably_damaging(0.963) TCGA-77-8153-01 12 120569734 120569734 C A GCN1L1 Missense_Mutation p.L2470F 0.28 possibly_damaging(0.591) TCGA-77-8153-01 12 123805343 123805343 A T SBNO1 Missense_Mutation p.D798E 0.44 tolerated(0.2) benign(0.026) TCGA-77-8153-01 12 125478545 125478545 A G BRI3BP Missense_Mutation p.Q70R 0.29 tolerated(0.32) benign(0.067) TCGA-77-8153-01 12 128899719 128899719 A C TMEM132C Silent p.R176R 0.13 TCGA-77-8153-01 12 129566331 129566331 C A TMEM132D Silent p.G632G 0.28 TCGA-77-8153-01 12 21176211 21176211 T C SLCO1B7 Silent p.Y192Y 0.28 TCGA-77-8153-01 12 22013940 22013940 A T ABCC9 Missense_Mutation p.L797I 0.43 deleterious(0) probably_damaging(0.995) TCGA-77-8153-01 12 2930004 2930004 C T ITFG2 Missense_Mutation p.P221S 0.28 tolerated(0.7) benign(0.001) TCGA-77-8153-01 12 40689288 40689288 G C LRRK2 Missense_Mutation p.E980Q 0.26 deleterious(0.03) probably_damaging(0.933) TCGA-77-8153-01 12 49435266 49435266 T A KMT2D Missense_Mutation p.K2096M 0.21 probably_damaging(0.994) TCGA-77-8153-01 12 50281171 50281171 A T FAIM2 Missense_Mutation p.L267M 0.29 tolerated(0.26) benign(0.148) TCGA-77-8153-01 12 53663600 53663600 C T ESPL1 Nonsense_Mutation p.Q292* 0.25 TCGA-77-8153-01 12 55794696 55794696 A G OR6C65 Silent p.L128L 0.47 TCGA-77-8153-01 12 6080790 6080790 C A VWF Missense_Mutation p.G2508V 0.39 deleterious(0) probably_damaging(0.972) TCGA-77-8153-01 12 8328521 8328521 T A ZNF705A Missense_Mutation p.S101T 0.45 tolerated(0.06) benign(0.002) TCGA-77-8153-01 12 95602847 95602847 T G FGD6 Missense_Mutation p.K738T 0.43 tolerated(0.43) benign(0.015) TCGA-77-8153-01 13 37011772 37011772 A T CCNA1 Missense_Mutation p.T102S 0.68 tolerated(0.43) benign(0.007) TCGA-77-8153-01 13 49030410 49030410 G T RB1 Nonsense_Mutation p.E629* 0.76 TCGA-77-8153-01 13 96212522 96212522 G T CLDN10 Missense_Mutation p.L119F 0.77 tolerated(0.9) benign(0.02) TCGA-77-8153-01 14 100705912 100705912 G A YY1 Missense_Mutation p.E111K 0.06 deleterious(0) probably_damaging(0.999) TCGA-77-8153-01 14 19563320 19563320 G T POTEG Intron 0.27 TCGA-77-8153-01 14 22309813 22309813 C T TRAV12-1 Missense_Mutation p.P65L 0.40 tolerated(0.19) possibly_damaging(0.465) TCGA-77-8153-01 14 53100268 53100268 T C GPR137C Silent p.S296S 0.30 TCGA-77-8153-01 14 54416782 54416782 C G BMP4 Missense_Mutation p.E399Q 0.05 deleterious(0.05) benign(0.292) TCGA-77-8153-01 14 69521809 69521809 C T DCAF5 Missense_Mutation p.D532N 0.03 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-77-8153-01 14 95670667 95670667 T C CLMN Missense_Mutation p.H340R 0.28 tolerated(0.05) benign(0.041) TCGA-77-8153-01 15 25477397 25477397 T C SNORD115-33 3'Flank 0.15 TCGA-77-8153-01 15 28499589 28499589 T A HERC2 Nonsense_Mutation p.R983* 0.30 TCGA-77-8153-01 15 30665210 30665210 T C CHRFAM7A Missense_Mutation p.Y100C 0.21 deleterious(0) probably_damaging(1) TCGA-77-8153-01 15 35159778 35159778 C G AQR Missense_Mutation p.Q1267H 0.16 deleterious(0) probably_damaging(0.992) TCGA-77-8153-01 15 41624908 41624908 G A NUSAP1 5'Flank 0.25 TCGA-77-8153-01 15 43023484 43023484 G A CDAN1 Silent p.I595I 0.43 TCGA-77-8153-01 15 43818620 43818620 G T MAP1A Missense_Mutation p.W1650L 0.37 probably_damaging(0.999) TCGA-77-8153-01 15 72432219 72432219 T C SENP8 Silent p.V85V 0.29 TCGA-77-8153-01 15 74238856 74238856 A T LOXL1 Missense_Mutation p.N437I 0.42 deleterious(0.03) possibly_damaging(0.541) TCGA-77-8153-01 15 77407074 77407074 G T PEAK1 Missense_Mutation p.N1555K 0.30 deleterious(0) probably_damaging(1) TCGA-77-8153-01 15 78474922 78474922 A G ACSBG1 Silent p.P260P 0.43 TCGA-77-8153-01 15 99500436 99500436 C T IGF1R Missense_Mutation p.P1290L 0.07 tolerated(0.06) benign(0.001) TCGA-77-8153-01 16 19451625 19451625 A C TMC5 Missense_Mutation p.N89H 0.36 tolerated_low_confidence(0.09) benign(0.004) TCGA-77-8153-01 16 20043709 20043709 T C GPR139 Missense_Mutation p.H137R 0.04 tolerated(1) possibly_damaging(0.673) TCGA-77-8153-01 16 2345596 2345596 C T ABCA3 Silent p.T803T 0.55 TCGA-77-8153-01 16 70563092 70563092 C G SF3B3 Silent p.A129A 0.12 TCGA-77-8153-01 17 10315754 10315754 A T MYH8 Missense_Mutation p.L450Q 0.37 deleterious(0) probably_damaging(1) TCGA-77-8153-01 17 17701797 17701797 G A RAI1 Silent p.L1845L 0.10 TCGA-77-8153-01 17 27493831 27493831 C T MYO18A Missense_Mutation p.R43H 0.40 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-77-8153-01 17 3337045 3337045 A G OR1E2 Missense_Mutation p.F31L 0.27 deleterious(0.03) benign(0.163) TCGA-77-8153-01 17 40696132 40696132 A G NAGLU Missense_Mutation p.Q703R 0.37 tolerated(0.25) benign(0.022) TCGA-77-8153-01 17 64683382 64683382 C T PRKCA Missense_Mutation p.T228I 0.26 tolerated(0.19) benign(0.152) TCGA-77-8153-01 17 66267365 66267365 G A SLC16A6 Silent p.S312S 0.31 TCGA-77-8153-01 17 72350310 72350310 A G KIF19 Missense_Mutation p.E773G 0.05 deleterious(0.02) possibly_damaging(0.611) TCGA-77-8153-01 17 7576928 7576928 T A TP53 Splice_Site p.X307_splice 0.82 TCGA-77-8153-01 17 76210454 76210454 C T BIRC5 Silent p.I19I 0.29 TCGA-77-8153-01 18 33744623 33744623 T C ELP2 Silent p.P714P 0.42 TCGA-77-8153-01 18 43319590 43319590 G A SLC14A1 Silent p.A359A 0.35 TCGA-77-8153-01 18 7231675 7231676 TG - LRRC30 Frame_Shift_Del p.F183Lfs*20 0.26 TCGA-77-8153-01 19 10610223 10610223 G T KEAP1 Missense_Mutation p.Q163K 0.38 deleterious(0) probably_damaging(0.998) TCGA-77-8153-01 19 11598679 11598679 C T ZNF653 Missense_Mutation p.S200N 0.20 tolerated(0.09) benign(0.023) TCGA-77-8153-01 19 14157304 14157304 G T IL27RA Missense_Mutation p.V339L 0.28 deleterious(0.03) possibly_damaging(0.712) TCGA-77-8153-01 19 18980879 18980879 G T GDF1 Silent p.R80R 0.33 TCGA-77-8153-01 19 19349186 19349186 C T NCAN Silent p.S1125S 0.26 TCGA-77-8153-01 19 33359438 33359438 C A SLC7A9 Translation_Start_Site p.M1? 0.04 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-77-8153-01 19 35719110 35719110 G T FAM187B Silent p.G158G 0.26 TCGA-77-8153-01 19 37129717 37129717 T A ZNF461 Silent p.S510S 0.29 TCGA-77-8153-01 19 44112112 44112112 C A ZNF428 Missense_Mutation p.R75L 0.60 tolerated_low_confidence(0.17) probably_damaging(0.969) TCGA-77-8153-01 19 44635270 44635270 A C ZNF225 Missense_Mutation p.Q168P 0.15 tolerated(0.09) probably_damaging(0.995) TCGA-77-8153-01 19 48734085 48734085 G A CARD8 Missense_Mutation p.P241S 0.54 deleterious(0.02) probably_damaging(0.986) TCGA-77-8153-01 19 50370312 50370312 T C PNKP Silent p.Q50Q 0.55 TCGA-77-8153-01 19 54611400 54611400 C T TFPT Missense_Mutation p.R192K 0.60 deleterious(0.02) probably_damaging(0.99) TCGA-77-8153-01 19 54965670 54965670 C G LENG8 Missense_Mutation p.S163W 0.55 deleterious(0.03) possibly_damaging(0.609) TCGA-77-8153-01 19 58724034 58724034 C T ZNF274 Missense_Mutation p.T495M 0.29 tolerated(0.06) benign(0.08) TCGA-77-8153-01 19 7601349 7601349 C G PNPLA6 Silent p.T119T 0.33 TCGA-77-8153-01 1 101198086 101198086 G C VCAM1 Missense_Mutation p.W546C 0.32 deleterious(0) probably_damaging(0.988) TCGA-77-8153-01 1 108307735 108307735 A T VAV3 Missense_Mutation p.I295N 0.27 deleterious(0) probably_damaging(0.987) TCGA-77-8153-01 1 109608810 109608817 TATAAGGA - TAF13 Frame_Shift_Del p.P49* 0.21 TCGA-77-8153-01 1 152383345 152383345 G C CRNN Missense_Mutation p.F71L 0.04 deleterious(0) probably_damaging(0.999) TCGA-77-8153-01 1 153065908 153065908 G T SPRR2E 3'UTR 0.18 TCGA-77-8153-01 1 158517273 158517273 G T OR6Y1 Missense_Mutation p.A208D 0.39 deleterious(0) probably_damaging(1) TCGA-77-8153-01 1 158517561 158517561 A G OR6Y1 Missense_Mutation p.F112S 0.32 deleterious(0) benign(0.347) TCGA-77-8153-01 1 158639268 158639268 T A SPTA1 Missense_Mutation p.Y588F 0.36 tolerated(0.67) benign(0.075) TCGA-77-8153-01 1 170940886 170940886 T A MROH9 Intron 0.33 TCGA-77-8153-01 1 175067682 175067682 C A TNN Silent p.A690A 0.32 TCGA-77-8153-01 1 200943958 200943958 C T KIF21B Silent p.A1566A 0.31 TCGA-77-8153-01 1 207679247 207679247 A G CR1 Splice_Site p.X41_splice 0.41 TCGA-77-8153-01 1 229567375 229567375 C T ACTA1 Silent p.P335P 0.39 TCGA-77-8153-01 1 23688573 23688573 G C ZNF436 Missense_Mutation p.I434M 0.45 tolerated(0.37) possibly_damaging(0.904) TCGA-77-8153-01 1 237813348 237813348 A T RYR2 Missense_Mutation p.T2562S 0.33 probably_damaging(0.997) TCGA-77-8153-01 1 23845521 23845521 G T E2F2 Missense_Mutation p.P280H 0.44 deleterious(0) probably_damaging(0.911) TCGA-77-8153-01 1 23857081 23857081 C A E2F2 Nonsense_Mutation p.G69* 0.24 TCGA-77-8153-01 1 248458522 248458522 C T OR2T12 Missense_Mutation p.R120H 0.34 deleterious(0.03) benign(0.116) TCGA-77-8153-01 1 248801708 248801708 C A OR2T35 Missense_Mutation p.M284I 0.31 deleterious(0.03) probably_damaging(0.937) TCGA-77-8153-01 1 26371681 26371681 T A SLC30A2 Missense_Mutation p.E26D 0.24 tolerated(0.86) benign(0.001) TCGA-77-8153-01 1 31656669 31656669 G T NKAIN1 Missense_Mutation p.L156M 0.14 deleterious(0) probably_damaging(0.93) TCGA-77-8153-01 1 33945198 33945198 G A ZSCAN20 Silent p.L103L 0.16 TCGA-77-8153-01 1 33945199 33945199 C A ZSCAN20 Missense_Mutation p.P104T 0.17 deleterious(0) probably_damaging(1) TCGA-77-8153-01 1 51831693 51831693 G T EPS15 Missense_Mutation p.P710T 0.09 deleterious(0) probably_damaging(1) TCGA-77-8153-01 1 52269589 52269589 G A NRD1 Missense_Mutation p.A805V 0.30 tolerated(0.25) possibly_damaging(0.484) TCGA-77-8153-01 1 67243015 67243015 C A TCTEX1D1 Missense_Mutation p.Q140K 0.35 deleterious(0) probably_damaging(0.98) TCGA-77-8153-01 1 76378473 76378473 G T MSH4 Missense_Mutation p.L904F 0.24 tolerated(0.07) possibly_damaging(0.742) TCGA-77-8153-01 1 99164351 99164351 G T SNX7 Missense_Mutation p.A310S 0.47 tolerated(0.51) benign(0.028) TCGA-77-8153-01 20 23669503 23669503 T C CST4 Missense_Mutation p.Y35C 0.28 tolerated(0.17) possibly_damaging(0.852) TCGA-77-8153-01 20 30898371 30898371 A - KIF3B Frame_Shift_Del p.A265Lfs*18 0.25 TCGA-77-8153-01 20 52193476 52193476 G A ZNF217 Silent p.D609D 0.60 TCGA-77-8153-01 20 57415424 57415424 A C RP4-806M20.3 5'Flank 0.08 TCGA-77-8153-01 21 16340542 16340542 G C NRIP1 5'UTR 0.50 TCGA-77-8153-01 22 17662289 17662289 C T CECR1 3'UTR 0.51 TCGA-77-8153-01 22 21984310 21984310 C G YDJC 5'UTR 0.25 TCGA-77-8153-01 22 24455703 24455703 G C CABIN1 Missense_Mutation p.D426H 0.15 deleterious(0) probably_damaging(0.999) TCGA-77-8153-01 22 39178808 39178808 C T DNAL4 5'UTR 0.07 TCGA-77-8153-01 22 39918209 39918209 G T ATF4 Missense_Mutation p.G220C 0.39 deleterious(0.01) probably_damaging(0.989) TCGA-77-8153-01 2 109388273 109388274 - T RANBP2 Frame_Shift_Ins p.T2656Ifs*8 0.24 TCGA-77-8153-01 2 136566421 136566421 C A LCT Missense_Mutation p.D1166Y 0.38 deleterious(0.03) probably_damaging(0.988) TCGA-77-8153-01 2 141625266 141625266 G A LRP1B Missense_Mutation p.T1491I 0.33 benign(0.002) TCGA-77-8153-01 2 168102750 168102750 G A XIRP2 Silent p.R1616R 0.30 TCGA-77-8153-01 2 179466070 179466070 G A TTN Missense_Mutation p.R18552C 0.33 TCGA-77-8153-01 2 179604399 179604399 C T TTN Missense_Mutation p.E4521K 0.29 TCGA-77-8153-01 2 179988533 179988533 T C SESTD1 Silent p.L397L 0.53 TCGA-77-8153-01 2 197767350 197767350 G T PGAP1 Missense_Mutation p.L256I 0.61 deleterious(0.04) probably_damaging(0.998) TCGA-77-8153-01 2 223554069 223554069 G A MOGAT1 Missense_Mutation p.G120E 0.67 tolerated(0.1) probably_damaging(1) TCGA-77-8153-01 2 26690087 26690087 C A OTOF Missense_Mutation p.E1414D 0.34 tolerated(0.21) benign(0.044) TCGA-77-8153-01 2 9621464 9621464 A G IAH1 Silent p.L111L 0.26 TCGA-77-8153-01 2 98355977 98355977 G C ZAP70 3'UTR 0.52 TCGA-77-8153-01 3 122081858 122081858 G A CCDC58 Missense_Mutation p.S114L 0.33 deleterious(0.03) possibly_damaging(0.643) TCGA-77-8153-01 3 136573517 136573517 T C SLC35G2 Missense_Mutation p.M72T 0.40 tolerated(0.5) benign(0.013) TCGA-77-8153-01 3 148903211 148903211 A G CP Silent p.L700L 0.21 TCGA-77-8153-01 3 15292785 15292785 A G CAPN7 3'UTR 0.35 TCGA-77-8153-01 3 164905749 164905749 C T SLITRK3 Missense_Mutation p.R957K 0.53 tolerated(0.17) probably_damaging(0.97) TCGA-77-8153-01 3 170078669 170078669 A C SKIL Missense_Mutation p.N184H 0.11 deleterious(0) probably_damaging(0.999) TCGA-77-8153-01 3 178936091 178936091 G C PIK3CA Missense_Mutation p.E545Q 0.16 tolerated(0.06) possibly_damaging(0.796) TCGA-77-8153-01 3 188327250 188327250 A T LPP Missense_Mutation p.Y244F 0.59 tolerated(0.23) benign(0.01) TCGA-77-8153-01 3 194373655 194373655 C A LSG1 Missense_Mutation p.G326C 0.55 deleterious(0.03) benign(0.377) TCGA-77-8153-01 3 25215980 25215980 C A AC133680.1 3'Flank 0.61 TCGA-77-8153-01 3 38318504 38318504 T C SLC22A13 Missense_Mutation p.L483P 0.50 deleterious(0.03) probably_damaging(0.972) TCGA-77-8153-01 3 93780213 93780213 T G DHFRL1 Missense_Mutation p.Q48P 0.36 deleterious(0) probably_damaging(0.952) TCGA-77-8153-01 4 114264196 114264196 C T ANK2 Silent p.Y1382Y 0.62 TCGA-77-8153-01 4 126398472 126398472 A T FAT4 Silent p.A4152A 0.63 TCGA-77-8153-01 4 140394024 140394024 T A RAB33B Missense_Mutation p.L145H 0.07 deleterious(0) probably_damaging(0.998) TCGA-77-8153-01 4 151271271 151271271 C A LRBA Missense_Mutation p.W2423L 0.55 deleterious(0) probably_damaging(0.999) TCGA-77-8153-01 4 17488802 17488802 C A QDPR Missense_Mutation p.Q229H 0.66 tolerated(0.05) possibly_damaging(0.758) TCGA-77-8153-01 4 39501832 39501832 T A UGDH Silent p.P472P 0.06 TCGA-77-8153-01 4 70148306 70148306 T A UGT2B28 Missense_Mutation p.F266I 0.08 deleterious(0.01) possibly_damaging(0.654) TCGA-77-8153-01 4 79847679 79847679 A G PAQR3 Missense_Mutation p.V233A 0.60 deleterious(0) possibly_damaging(0.823) TCGA-77-8153-01 4 8417694 8417694 A G ACOX3 Silent p.P59P 0.63 TCGA-77-8153-01 4 88403608 88403608 C G SPARCL1 Missense_Mutation p.A546P 0.55 tolerated(0.47) benign(0.053) TCGA-77-8153-01 5 125889998 125889998 G A ALDH7A1 Missense_Mutation p.T394I 0.21 deleterious(0.03) benign(0.131) TCGA-77-8153-01 5 133657540 133657540 A T CDKL3 Missense_Mutation p.N198K 0.54 tolerated(0.06) possibly_damaging(0.794) TCGA-77-8153-01 5 1422015 1422015 C T SLC6A3 Nonsense_Mutation p.W256* 0.09 TCGA-77-8153-01 5 146804528 146804528 T C DPYSL3 Splice_Site p.X128_splice 0.56 TCGA-77-8153-01 5 156936329 156936329 A G ADAM19 Silent p.H295H 0.48 TCGA-77-8153-01 5 24593722 24593722 G T CDH10 Intron 0.92 TCGA-77-8153-01 5 41200014 41200014 A C C6 Missense_Mutation p.S101A 0.10 deleterious(0) benign(0.012) TCGA-77-8153-01 5 44809289 44809289 G T MRPS30 Silent p.S75S 0.08 TCGA-77-8153-01 5 72864335 72864335 G C UTP15 Missense_Mutation p.G92R 0.63 deleterious(0) probably_damaging(0.996) TCGA-77-8153-01 6 108227940 108227940 G C SEC63 Missense_Mutation p.Q259E 0.29 tolerated(0.55) benign(0.016) TCGA-77-8153-01 6 117201783 117201783 T C RFX6 Missense_Mutation p.C153R 0.27 deleterious(0) probably_damaging(1) TCGA-77-8153-01 6 152668208 152668208 T A SYNE1 Missense_Mutation p.S4022C 0.41 possibly_damaging(0.702) TCGA-77-8153-01 6 152718106 152718106 C A SYNE1 Missense_Mutation p.D2454Y 0.36 probably_damaging(0.995) TCGA-77-8153-01 6 160664609 160664609 G A SLC22A2 Missense_Mutation p.P425L 0.38 deleterious(0) probably_damaging(0.955) TCGA-77-8153-01 6 24178668 24178668 C T DCDC2 Missense_Mutation p.G406R 0.10 tolerated_low_confidence(0.06) benign(0.079) TCGA-77-8153-01 6 26124559 26124559 C T HIST1H2AC Silent p.R33R 0.39 TCGA-77-8153-01 6 29556735 29556735 C A OR2H2 3'UTR 0.73 TCGA-77-8153-01 6 30671226 30671226 G C MDC1 Missense_Mutation p.T1884S 0.05 tolerated(0.06) probably_damaging(0.97) TCGA-77-8153-01 6 31797684 31797684 G C HSPA1B 3'UTR 0.38 TCGA-77-8153-01 6 33239510 33239510 G C VPS52 5'UTR 0.32 TCGA-77-8153-01 6 37298846 37298846 A G TBC1D22B Silent p.L472L 0.39 TCGA-77-8153-01 6 41889450 41889450 G T BYSL Silent p.V50V 0.31 TCGA-77-8153-01 6 46821625 46821625 G A GPR116 3'UTR 0.26 TCGA-77-8153-01 6 70500212 70500212 C A LMBRD1 Missense_Mutation p.M74I 0.38 deleterious(0.01) possibly_damaging(0.535) TCGA-77-8153-01 6 75893206 75893206 T C COL12A1 Missense_Mutation p.Y484C 0.34 probably_damaging(0.999) TCGA-77-8153-01 6 90039345 90039345 G A UBE2J1 3'UTR 0.38 TCGA-77-8153-01 6 90039346 90039346 C A UBE2J1 3'UTR 0.37 TCGA-77-8153-01 7 106786797 106786797 G A PRKAR2B Missense_Mutation p.C211Y 0.27 tolerated(1) benign(0.04) TCGA-77-8153-01 7 107735696 107735696 C G LAMB4 Missense_Mutation p.G483R 0.36 deleterious(0) probably_damaging(1) TCGA-77-8153-01 7 11521506 11521506 C G THSD7A Silent p.T642T 0.79 TCGA-77-8153-01 7 128441446 128441446 A G CCDC136 Missense_Mutation p.M185V 0.53 deleterious(0.04) possibly_damaging(0.452) TCGA-77-8153-01 7 155559223 155559223 A T RBM33 Silent p.P1083P 0.26 TCGA-77-8153-01 7 158738474 158738474 G T WDR60 3'UTR 0.32 TCGA-77-8153-01 7 19737925 19737925 G A TWISTNB 3'UTR 0.09 TCGA-77-8153-01 7 42961376 42961376 C A PSMA2 Intron 0.26 TCGA-77-8153-01 7 51111101 51111101 C A COBL Missense_Mutation p.G462V 0.13 deleterious(0.05) benign(0.037) TCGA-77-8153-01 7 98995582 98995582 G A PDAP1 Silent p.A130A 0.32 TCGA-77-8153-01 7 99463681 99463681 C T CYP3A43 3'Flank 0.15 TCGA-77-8153-01 7 99936420 99936420 T C PILRB 5'UTR 0.41 TCGA-77-8153-01 8 133900457 133900457 T C TG Missense_Mutation p.L802P 0.40 deleterious(0) probably_damaging(0.955) TCGA-77-8153-01 8 146107328 146107328 C A ZNF250 Nonsense_Mutation p.E419* 0.47 TCGA-77-8153-01 8 67428259 67428259 A T C8orf46 Missense_Mutation p.K191M 0.29 deleterious(0) probably_damaging(0.997) TCGA-77-8153-01 8 92983057 92983057 C A RUNX1T1 Silent p.V467V 0.37 TCGA-77-8153-01 9 101831987 101831987 C A COL15A1 Missense_Mutation p.P1329H 0.29 deleterious(0.01) benign(0.284) TCGA-77-8153-01 9 102782926 102782926 C T ERP44 Missense_Mutation p.D187N 0.23 deleterious(0) possibly_damaging(0.627) TCGA-77-8153-01 9 114305110 114305110 A G ZNF483 Missense_Mutation p.E632G 0.23 deleterious(0) possibly_damaging(0.758) TCGA-77-8153-01 9 123903056 123903056 G T CNTRL Silent p.G825G 0.27 TCGA-77-8153-01 9 130504239 130504239 C A SH2D3C Splice_Site p.X639_splice 0.45 TCGA-77-8153-01 9 134736057 134736057 G T MED27 Silent p.T268T 0.38 TCGA-77-8153-01 9 140174028 140174028 A G TOR4A Missense_Mutation p.Y296C 0.30 deleterious(0) probably_damaging(0.99) TCGA-77-8153-01 9 21305249 21305249 A T IFNA5 Missense_Mutation p.L3M 0.18 tolerated(0.06) possibly_damaging(0.823) TCGA-77-8153-01 9 35957772 35957772 C T OR2S2 Missense_Mutation p.M108I 0.14 deleterious(0.02) benign(0.027) TCGA-77-8153-01 9 69200524 69200524 G A FOXD4L6 Silent p.C363C 0.52 TCGA-77-8153-01 9 80046295 80046295 G A GNA14 Nonsense_Mutation p.R179* 0.05 TCGA-77-8153-01 X 110576288 110576288 C A DCX Missense_Mutation p.D348Y 0.52 deleterious(0) probably_damaging(0.976) TCGA-77-8153-01 X 111000820 111000820 A G ALG13 Missense_Mutation p.Y993C 0.52 tolerated(0.17) benign(0.012) TCGA-77-8153-01 X 11783889 11783889 C G MSL3 Intron 0.41 TCGA-77-8153-01 X 122755305 122755305 G A THOC2 Missense_Mutation p.R1307W 0.04 deleterious(0) possibly_damaging(0.708) TCGA-77-8153-01 X 15800831 15800831 A T CA5B 3'UTR 0.31 TCGA-77-8153-01 X 17167144 17167144 G A REPS2 3'UTR 0.47 TCGA-77-8153-01 X 17743629 17743629 G T NHS Missense_Mutation p.R447M 0.49 deleterious(0) probably_damaging(0.998) TCGA-77-8153-01 X 17743630 17743630 G T NHS Missense_Mutation p.R447S 0.49 deleterious(0) probably_damaging(0.995) TCGA-77-8153-01 X 31496240 31496240 G C DMD Missense_Mutation p.H2974D 0.53 benign(0.402) TCGA-77-8153-01 X 32827672 32827672 A T DMD Missense_Mutation p.L196Q 0.34 probably_damaging(0.998) TCGA-77-8153-01 X 44703614 44703614 C A DUSP21 Nonsense_Mutation p.S79* 0.28 TCGA-77-8153-01 X 49958046 49958046 C G AKAP4 Missense_Mutation p.E440Q 0.05 tolerated(0.28) benign(0.422) TCGA-77-8153-01 X 76711951 76711951 C - FGF16 Frame_Shift_Del p.R98Gfs*3 0.37 TCGA-77-8154-01 10 118354315 118354315 A T PNLIPRP1 Missense_Mutation p.Q135L 0.46 deleterious(0) probably_damaging(0.966) TCGA-77-8154-01 10 119798866 119798876 TTCACCTTCAT - RAB11FIP2 Frame_Shift_Del p.D291Vfs*8 0.16 TCGA-77-8154-01 10 126660649 126660649 A G ZRANB1 Missense_Mutation p.Y373C 0.28 tolerated(0.07) benign(0.012) TCGA-77-8154-01 10 135013907 135013907 G T KNDC1 Nonsense_Mutation p.E978* 0.36 TCGA-77-8154-01 10 18430125 18430125 G A CACNB2 Intron 0.50 TCGA-77-8154-01 10 43288422 43288422 G C BMS1 Missense_Mutation p.V307L 0.28 tolerated(0.24) benign(0.071) TCGA-77-8154-01 10 50916654 50916654 G A C10orf53 Silent p.Q155Q 0.31 TCGA-77-8154-01 10 69882089 69882089 T A MYPN Silent p.P298P 0.28 TCGA-77-8154-01 10 76748792 76748792 C T KAT6B Nonsense_Mutation p.Q851* 0.34 TCGA-77-8154-01 10 93260258 93260258 G T HECTD2 Splice_Site p.X651_splice 0.17 TCGA-77-8154-01 10 99222374 99222374 C A MMS19 Missense_Mutation p.V660F 0.10 deleterious(0) benign(0.34) TCGA-77-8154-01 11 108017085 108017085 G T ACAT1 Missense_Mutation p.G388W 0.14 deleterious(0) probably_damaging(1) TCGA-77-8154-01 11 108380294 108380294 C A EXPH5 Silent p.L1980L 0.19 TCGA-77-8154-01 11 119045290 119045290 C T NLRX1 Silent p.L326L 0.22 TCGA-77-8154-01 11 122852237 122852237 C A BSX Missense_Mutation p.R48L 0.46 deleterious(0.02) possibly_damaging(0.694) TCGA-77-8154-01 11 124747920 124747920 C T ROBO3 Missense_Mutation p.A1025V 0.15 tolerated(0.12) benign(0.004) TCGA-77-8154-01 11 128354758 128354758 G A ETS1 Silent p.V274V 0.50 TCGA-77-8154-01 11 24927535 24927535 A C LUZP2 Splice_Site p.X133_splice 0.41 TCGA-77-8154-01 11 24998166 24998166 A T LUZP2 Missense_Mutation p.K184N 0.48 deleterious(0) probably_damaging(0.994) TCGA-77-8154-01 11 31287065 31287065 T A DCDC1 Missense_Mutation p.D348V 0.17 deleterious(0) possibly_damaging(0.816) TCGA-77-8154-01 11 55135952 55135952 G A OR4A15 Missense_Mutation p.G198E 0.31 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-77-8154-01 11 57003463 57003463 C T APLNR Missense_Mutation p.S339N 0.32 tolerated(0.23) benign(0.157) TCGA-77-8154-01 11 57281439 57281439 G T SLC43A1 Missense_Mutation p.T49K 0.37 deleterious(0.01) benign(0.001) TCGA-77-8154-01 11 61017429 61017429 C T PGA5 Silent p.I320I 0.22 TCGA-77-8154-01 11 68478353 68478353 G T MTL5 Missense_Mutation p.F441L 0.49 tolerated(0.85) benign(0.001) TCGA-77-8154-01 11 686879 686879 T C DEAF1 Silent p.R261R 0.11 TCGA-77-8154-01 11 71932699 71932699 A T FOLR2 Missense_Mutation p.R221W 0.25 deleterious(0) probably_damaging(0.91) TCGA-77-8154-01 11 72005479 72005479 G A CLPB Missense_Mutation p.R554W 0.26 deleterious(0) probably_damaging(0.995) TCGA-77-8154-01 12 10213792 10213792 T A CLEC9A Missense_Mutation p.L80Q 0.34 tolerated(0.33) benign(0.139) TCGA-77-8154-01 12 117993055 117993055 G T KSR2 Silent p.I479I 0.37 TCGA-77-8154-01 12 121434171 121434171 G A HNF1A Silent p.T354T 0.42 TCGA-77-8154-01 12 123082470 123082470 T C KNTC1 Silent p.S1516S 0.53 TCGA-77-8154-01 12 130921423 130921423 G T RIMBP2 Silent p.A673A 0.15 TCGA-77-8154-01 12 18891266 18891266 G C CAPZA3 Missense_Mutation p.A22P 0.38 tolerated(0.08) possibly_damaging(0.875) TCGA-77-8154-01 12 2675660 2675660 C A CACNA1C Nonsense_Mutation p.Y527* 0.33 TCGA-77-8154-01 12 330671 330671 G A SLC6A13 Silent p.T519T 0.19 TCGA-77-8154-01 12 49431691 49431691 G - KMT2D Frame_Shift_Del p.G3151Afs*4 0.23 TCGA-77-8154-01 12 50044573 50044573 G A FMNL3 Missense_Mutation p.A629V 0.21 tolerated(0.22) benign(0.318) TCGA-77-8154-01 12 50386129 50386129 C A RACGAP1 Missense_Mutation p.V493F 0.44 deleterious(0.02) possibly_damaging(0.531) TCGA-77-8154-01 12 53946370 53946370 T C ATF7 Missense_Mutation p.T34A 0.16 deleterious(0) possibly_damaging(0.899) TCGA-77-8154-01 12 662714 662714 C T B4GALNT3 Missense_Mutation p.P542L 0.27 tolerated(0.11) benign(0.02) TCGA-77-8154-01 12 77157995 77157995 G T ZDHHC17 5'UTR 0.33 TCGA-77-8154-01 12 80655857 80655857 C A OTOGL Missense_Mutation p.N657K 0.37 deleterious(0.01) possibly_damaging(0.638) TCGA-77-8154-01 13 98654843 98654843 C A IPO5 Missense_Mutation p.P429T 0.40 deleterious(0.03) benign(0.044) TCGA-77-8154-01 14 106066505 106066505 G A IGHE Silent p.A395A 0.37 TCGA-77-8154-01 14 20929514 20929514 G A TMEM55B 5'UTR 0.25 TCGA-77-8154-01 14 23842104 23842104 G C IL25 5'UTR 0.42 TCGA-77-8154-01 14 65032112 65032112 T C PPP1R36 Missense_Mutation p.S103P 0.70 tolerated(0.07) possibly_damaging(0.887) TCGA-77-8154-01 14 68126633 68126633 C G VTI1B Missense_Mutation p.E61Q 0.82 deleterious(0.05) benign(0.264) TCGA-77-8154-01 14 68189294 68189294 T A RDH12 5'UTR 0.68 TCGA-77-8154-01 14 77691780 77691780 G C TMEM63C Missense_Mutation p.W109S 0.61 deleterious(0) probably_damaging(0.995) TCGA-77-8154-01 15 101529477 101529477 C T LRRK1 Silent p.F212F 0.29 TCGA-77-8154-01 15 20489442 20489442 C A CHEK2P2 RNA 0.10 TCGA-77-8154-01 15 20489443 20489443 C A CHEK2P2 RNA 0.10 TCGA-77-8154-01 15 22960839 22960839 G A CYFIP1 Missense_Mutation p.A678T 0.32 deleterious(0.03) benign(0.327) TCGA-77-8154-01 15 25959383 25959383 C G ATP10A Missense_Mutation p.R594S 0.15 tolerated(0.23) benign(0.155) TCGA-77-8154-01 15 75561228 75561228 C T GOLGA6C Missense_Mutation p.T531M 0.18 tolerated(1) benign(0.005) TCGA-77-8154-01 15 75798247 75798247 C A PTPN9 Missense_Mutation p.W246L 0.26 deleterious(0) probably_damaging(0.997) TCGA-77-8154-01 15 87572070 87572070 G A AGBL1 Silent p.%3D 0.32 TCGA-77-8154-01 15 89850733 89850733 A T FANCI Silent p.G1188G 0.26 TCGA-77-8154-01 15 94841862 94841862 C T MCTP2 Missense_Mutation p.A123V 0.27 tolerated(0.78) benign(0.001) TCGA-77-8154-01 16 18860591 18860591 C A SMG1 Missense_Mutation p.L1857F 0.59 deleterious(0.02) benign(0.112) TCGA-77-8154-01 16 2000909 2000909 A T RPL3L Missense_Mutation p.L146Q 0.54 deleterious(0.01) benign(0.242) TCGA-77-8154-01 16 21031071 21031071 G A DNAH3 Missense_Mutation p.T1966I 0.53 tolerated(0.09) benign(0.004) TCGA-77-8154-01 16 22142587 22142587 C A VWA3A Missense_Mutation p.Q572K 0.39 deleterious(0.02) probably_damaging(0.991) TCGA-77-8154-01 16 24105566 24105566 G T PRKCB Nonsense_Mutation p.G257* 0.06 TCGA-77-8154-01 16 25235770 25235770 G A AQP8 Missense_Mutation p.V159M 0.05 tolerated(0.16) benign(0.314) TCGA-77-8154-01 16 25238433 25238433 G T AQP8 Missense_Mutation p.G216V 0.04 deleterious(0) probably_damaging(1) TCGA-77-8154-01 16 50746282 50746282 G T NOD2 Silent p.L820L 0.29 TCGA-77-8154-01 16 67988560 67988560 T A SLC12A4 Missense_Mutation p.I223F 0.21 deleterious(0) probably_damaging(0.913) TCGA-77-8154-01 16 70843766 70843766 G A HYDIN Nonsense_Mutation p.Q4935* 0.35 TCGA-77-8154-01 16 83520256 83520256 G C CDH13 Missense_Mutation p.R366P 0.23 deleterious(0) probably_damaging(0.994) TCGA-77-8154-01 16 84690533 84690533 T A KLHL36 Silent p.R40R 0.28 TCGA-77-8154-01 16 89999886 89999886 C T TUBB3 Silent p.Y59Y 0.29 TCGA-77-8154-01 16 90124522 90124522 G A PRDM7 3'UTR 0.28 TCGA-77-8154-01 17 11593019 11593019 C A DNAH9 Missense_Mutation p.Q1294K 0.35 benign(0.013) TCGA-77-8154-01 17 18166090 18166090 G A MIEF2 Missense_Mutation p.S30N 0.10 tolerated(0.13) benign(0.022) TCGA-77-8154-01 17 38252030 38252030 G T NR1D1 Missense_Mutation p.D305E 0.30 tolerated(0.68) benign(0.145) TCGA-77-8154-01 17 39382916 39382916 T A KRTAP9-2 Missense_Mutation p.C4S 0.09 deleterious(0) unknown(0) TCGA-77-8154-01 17 48595048 48595048 G C MYCBPAP Missense_Mutation p.G196R 0.75 tolerated(0.06) probably_damaging(1) TCGA-77-8154-01 17 61949506 61949506 C T CSH2 Missense_Mutation p.E212K 0.67 deleterious(0.02) benign(0.048) TCGA-77-8154-01 17 7577106 7577106 G C TP53 Missense_Mutation p.P278A 0.50 deleterious(0.01) probably_damaging(1) TCGA-77-8154-01 17 7951083 7951083 G T ALOX15B Missense_Mutation p.M567I 0.55 deleterious(0.05) benign(0.038) TCGA-77-8154-01 18 11753875 11753875 C A GNAL Missense_Mutation p.N185K 0.07 tolerated(0.08) probably_damaging(0.926) TCGA-77-8154-01 18 14542908 14542908 C A POTEC Missense_Mutation p.V80L 0.12 deleterious_low_confidence(0.05) benign(0) TCGA-77-8154-01 18 47800142 47800142 C A MBD1 Missense_Mutation p.R413L 0.39 tolerated(0.07) benign(0.313) TCGA-77-8154-01 19 17835924 17835924 G C MAP1S Missense_Mutation p.E124Q 0.21 tolerated(0.2) benign(0.165) TCGA-77-8154-01 19 17893939 17893939 C T FCHO1 Missense_Mutation p.T684I 0.26 deleterious(0.02) benign(0.116) TCGA-77-8154-01 19 18329778 18329778 A T PDE4C Missense_Mutation p.L346H 0.29 deleterious(0) probably_damaging(0.971) TCGA-77-8154-01 19 21512021 21512021 G T ZNF708 5'UTR 0.30 TCGA-77-8154-01 19 30506061 30506061 A G URI1 3'UTR 0.50 TCGA-77-8154-01 19 36277899 36277899 G T ARHGAP33 Nonsense_Mutation p.G682* 0.23 TCGA-77-8154-01 19 44241835 44241835 C T SMG9 Splice_Site p.X304_splice 0.33 TCGA-77-8154-01 19 52132660 52132660 G T SIGLEC5 Silent p.R217R 0.37 TCGA-77-8154-01 19 52272565 52272565 C A FPR2 Silent p.A218A 0.39 TCGA-77-8154-01 19 52272566 52272566 A T FPR2 Missense_Mutation p.I219F 0.41 deleterious(0) possibly_damaging(0.878) TCGA-77-8154-01 19 54308690 54308690 C A NLRP12 Missense_Mutation p.R753L 0.50 tolerated(0.65) benign(0.006) TCGA-77-8154-01 19 54696155 54696155 G T TSEN34 Missense_Mutation p.D226Y 0.59 deleterious(0) probably_damaging(0.997) TCGA-77-8154-01 19 56303801 56303801 G A NLRP11 Silent p.S793S 0.55 TCGA-77-8154-01 19 7607506 7607506 G A PNPLA6 Missense_Mutation p.V447M 0.09 tolerated(0.12) benign(0.025) TCGA-77-8154-01 1 100155084 100155084 C T PALMD Missense_Mutation p.A423V 0.09 tolerated(0.57) probably_damaging(1) TCGA-77-8154-01 1 100342099 100342099 G C AGL Missense_Mutation p.A457P 0.36 deleterious(0) probably_damaging(1) TCGA-77-8154-01 1 104114230 104114230 G A AMY2B Silent p.K2K 0.21 TCGA-77-8154-01 1 112298739 112298739 G T DDX20 Nonsense_Mutation p.E65* 0.28 TCGA-77-8154-01 1 118554884 118554884 C A SPAG17 Missense_Mutation p.D1467Y 0.35 deleterious(0) probably_damaging(0.99) TCGA-77-8154-01 1 119441676 119441676 G A TBX15 Silent p.D227D 0.27 TCGA-77-8154-01 1 152282956 152282956 C T FLG Missense_Mutation p.R1469H 0.31 possibly_damaging(0.522) TCGA-77-8154-01 1 152325575 152325575 G C FLG2 Missense_Mutation p.Q1563E 0.31 possibly_damaging(0.514) TCGA-77-8154-01 1 152759940 152759940 C G LCE1E Missense_Mutation p.S55R 0.18 tolerated_low_confidence(0.22) unknown(0) TCGA-77-8154-01 1 154140353 154140353 G A TPM3 3'UTR 0.33 TCGA-77-8154-01 1 155159799 155159799 C A MUC1 Missense_Mutation p.A419S 0.38 tolerated(0.21) benign(0.182) TCGA-77-8154-01 1 158064482 158064482 T C KIRREL Missense_Mutation p.S616P 0.08 tolerated(0.13) benign(0.002) TCGA-77-8154-01 1 159409656 159409656 C G OR10J1 Missense_Mutation p.I36M 0.32 tolerated(0.07) benign(0.04) TCGA-77-8154-01 1 167408637 167408637 A G CD247 Missense_Mutation p.F55L 0.29 tolerated(0.47) possibly_damaging(0.645) TCGA-77-8154-01 1 168698376 168698376 C A DPT Missense_Mutation p.V13F 0.26 tolerated(0.11) benign(0.027) TCGA-77-8154-01 1 186316544 186316544 T C TPR Silent p.L941L 0.32 TCGA-77-8154-01 1 19635082 19635082 C T AKR7A2 Missense_Mutation p.S118N 0.29 tolerated(0.1) benign(0.046) TCGA-77-8154-01 1 201193942 201193942 G T IGFN1 Missense_Mutation p.V3476L 0.52 possibly_damaging(0.799) TCGA-77-8154-01 1 207196818 207196818 T A C1orf116 Silent p.P97P 0.52 TCGA-77-8154-01 1 207737245 207737245 G A CR1 Missense_Mutation p.R1208H 0.37 tolerated(0.97) benign(0.001) TCGA-77-8154-01 1 21226285 21226285 T C EIF4G3 Missense_Mutation p.N585S 0.36 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-77-8154-01 1 216011341 216011341 G A USH2A Silent p.I3121I 0.23 TCGA-77-8154-01 1 235577860 235577860 A G TBCE Missense_Mutation p.K100E 0.47 tolerated(0.54) benign(0.003) TCGA-77-8154-01 1 237890421 237890421 G - RYR2 Frame_Shift_Del p.W3587Cfs*14 0.23 TCGA-77-8154-01 1 248512090 248512094 CCACC ATACT OR14C36 Missense_Mutation p.T5N 0.08 TCGA-77-8154-01 1 248616639 248616639 G C OR2T2 Missense_Mutation p.E181Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-77-8154-01 1 25687218 25687218 A T TMEM50A 3'UTR 0.29 TCGA-77-8154-01 1 26795546 26795546 G T DHDDS Missense_Mutation p.R310L 0.43 deleterious(0) probably_damaging(1) TCGA-77-8154-01 1 27480854 27480854 T C SLC9A1 5'UTR 0.09 TCGA-77-8154-01 1 40768378 40768378 C A COL9A2 Missense_Mutation p.K569N 0.50 tolerated(0.09) possibly_damaging(0.707) TCGA-77-8154-01 1 54610361 54610361 G A CDCP2 Silent p.L69L 0.08 TCGA-77-8154-01 1 75038690 75038690 C G C1orf173 Missense_Mutation p.A902P 0.28 tolerated(0.17) benign(0.009) TCGA-77-8154-01 1 84880506 84880506 C A DNASE2B Nonsense_Mutation p.Y347* 0.25 TCGA-77-8154-01 1 84880507 84880507 C T DNASE2B Nonsense_Mutation p.Q348* 0.26 TCGA-77-8154-01 20 35507505 35507505 C T TLDC2 Missense_Mutation p.S84L 0.32 tolerated(0.15) benign(0.243) TCGA-77-8154-01 20 47364376 47364376 C T PREX1 Silent p.V87V 0.26 TCGA-77-8154-01 20 58564126 58564126 C - CDH26 Frame_Shift_Del p.Q399Rfs*29 0.27 TCGA-77-8154-01 20 61919068 61919068 C T ARFGAP1 Missense_Mutation p.S363F 0.26 deleterious(0) probably_damaging(0.992) TCGA-77-8154-01 20 61981990 61981990 G A CHRNA4 Missense_Mutation p.S258F 0.31 deleterious(0) probably_damaging(1) TCGA-77-8154-01 20 7866365 7866365 G T HAO1 Silent p.G320G 0.28 TCGA-77-8154-01 21 31691935 31691935 G T KRTAP26-1 Missense_Mutation p.P140H 0.31 tolerated(0.1) probably_damaging(0.944) TCGA-77-8154-01 21 32253234 32253234 G T KRTAP11-1 3'UTR 0.29 TCGA-77-8154-01 22 17073203 17073203 G T CCT8L2 Missense_Mutation p.L80M 0.27 deleterious(0) probably_damaging(1) TCGA-77-8154-01 22 17073204 17073204 G T CCT8L2 Silent p.A79A 0.27 TCGA-77-8154-01 22 21801034 21801034 A C HIC2 3'UTR 0.05 TCGA-77-8154-01 22 32754010 32754010 C A RFPL3 5'UTR 0.17 TCGA-77-8154-01 22 50987707 50987707 G T KLHDC7B Missense_Mutation p.C371F 0.31 deleterious(0.01) probably_damaging(0.944) TCGA-77-8154-01 2 101883320 101883320 A T CNOT11 Missense_Mutation p.H406L 0.28 deleterious(0) probably_damaging(0.992) TCGA-77-8154-01 2 102965593 102965593 C A IL1RL1 Missense_Mutation p.T391K 0.23 tolerated(0.06) benign(0.34) TCGA-77-8154-01 2 108921088 108921088 G - SULT1C2 Frame_Shift_Del p.M157* 0.28 TCGA-77-8154-01 2 113764236 113764236 C T IL36A Silent p.P62P 0.31 TCGA-77-8154-01 2 122182834 122182834 C A CLASP1 Missense_Mutation p.G698V 0.26 deleterious(0.03) possibly_damaging(0.659) TCGA-77-8154-01 2 135738369 135738369 C G MAP3K19 Intron 0.47 TCGA-77-8154-01 2 160229634 160229634 G - BAZ2B Frame_Shift_Del p.Q1379Kfs*19 0.27 TCGA-77-8154-01 2 170930044 170930044 C T UBR3 Missense_Mutation p.P1709L 0.44 tolerated(0.08) benign(0.055) TCGA-77-8154-01 2 17696494 17696494 A G RAD51AP2 Silent p.N1063N 0.34 TCGA-77-8154-01 2 179412404 179412404 C T TTN Missense_Mutation p.E31317K 0.31 TCGA-77-8154-01 2 179412406 179412406 A C TTN Missense_Mutation p.I31316S 0.31 TCGA-77-8154-01 2 179665164 179665164 T C TTN Missense_Mutation p.S181G 0.32 TCGA-77-8154-01 2 183066507 183066507 C A PDE1A Silent p.R320R 0.32 TCGA-77-8154-01 2 187627308 187627308 G A FAM171B Missense_Mutation p.E747K 0.28 deleterious(0.02) probably_damaging(0.946) TCGA-77-8154-01 2 191524202 191524202 A G NAB1 Silent p.P100P 0.30 TCGA-77-8154-01 2 196849416 196849416 C T DNAH7 Silent p.E591E 0.36 TCGA-77-8154-01 2 208811147 208811147 C T PLEKHM3 Missense_Mutation p.D546N 0.28 tolerated(0.44) probably_damaging(0.998) TCGA-77-8154-01 2 211471526 211471526 A T CPS1 Missense_Mutation p.I691F 0.23 deleterious(0) possibly_damaging(0.502) TCGA-77-8154-01 2 212285233 212285233 A G ERBB4 Missense_Mutation p.L1023S 0.47 deleterious(0) probably_damaging(0.931) TCGA-77-8154-01 2 228563586 228563586 G A SLC19A3 Missense_Mutation p.S282F 0.44 deleterious(0) probably_damaging(0.998) TCGA-77-8154-01 2 231150512 231150512 C T SP140 Missense_Mutation p.A537V 0.39 tolerated(1) benign(0.002) TCGA-77-8154-01 2 238475676 238475676 G C PRLH Missense_Mutation p.W41S 0.10 deleterious(0) probably_damaging(0.999) TCGA-77-8154-01 2 27445470 27445470 C G CAD Silent p.L193L 0.38 TCGA-77-8154-01 2 42990089 42990089 C G OXER1 Missense_Mutation p.G411R 0.19 tolerated(0.36) benign(0) TCGA-77-8154-01 2 49190614 49190614 G T FSHR Missense_Mutation p.T449N 0.16 deleterious(0) probably_damaging(0.981) TCGA-77-8154-01 2 60688558 60688558 C A BCL11A Nonsense_Mutation p.E497* 0.38 TCGA-77-8154-01 2 66667746 66667746 T A MEIS1 Splice_Site p.X144_splice 0.48 TCGA-77-8154-01 2 71788959 71788959 A G DYSF Missense_Mutation p.H765R 0.29 tolerated(0.52) benign(0.001) TCGA-77-8154-01 2 89513347 89513347 G C IGKV1-27 Silent p.L12L 0.23 TCGA-77-8154-01 2 90229376 90229376 C T IGKV1D-42 Missense_Mutation p.P66S 0.25 deleterious(0.01) probably_damaging(1) TCGA-77-8154-01 2 96948966 96948966 G A SNRNP200 Missense_Mutation p.R1630C 0.29 deleterious(0) possibly_damaging(0.893) TCGA-77-8154-01 3 164906106 164906106 G A SLITRK3 Missense_Mutation p.P838L 0.19 tolerated_low_confidence(1) benign(0.01) TCGA-77-8154-01 3 27183037 27183037 C A NEK10 Missense_Mutation p.R1026L 0.40 deleterious(0) probably_damaging(0.994) TCGA-77-8154-01 3 37565046 37565046 G A ITGA9 Missense_Mutation p.R424Q 0.61 tolerated(0.39) benign(0.002) TCGA-77-8154-01 3 38616939 38616939 C T SCN5A Missense_Mutation p.C1172Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-77-8154-01 3 51352435 51352435 C T DOCK3 Missense_Mutation p.P1093L 0.43 deleterious(0) probably_damaging(0.999) TCGA-77-8154-01 3 52847352 52847352 C A ITIH4 3'UTR 0.37 TCGA-77-8154-01 3 98073443 98073443 C T OR5K4 Missense_Mutation p.S249L 0.23 deleterious(0.02) benign(0.073) TCGA-77-8154-01 4 102117110 102117110 C T PPP3CA Silent p.Q74Q 0.26 TCGA-77-8154-01 4 144801657 144801657 C A GYPE Missense_Mutation p.V15L 0.11 deleterious_low_confidence(0.01) benign(0.198) TCGA-77-8154-01 4 159547972 159547972 G C RXFP1 Silent p.L252L 0.20 TCGA-77-8154-01 4 164507037 164507037 G T MARCH1 Missense_Mutation p.P96H 0.17 deleterious(0) probably_damaging(1) TCGA-77-8154-01 4 164507038 164507038 G T MARCH1 Missense_Mutation p.P96T 0.17 deleterious(0) probably_damaging(1) TCGA-77-8154-01 4 174450297 174450297 G A HAND2 Silent p.I48I 0.18 TCGA-77-8154-01 4 175649810 175649810 C A GLRA3 Missense_Mutation p.D103Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-77-8154-01 4 183713588 183713588 C A TENM3 Missense_Mutation p.N1921K 0.30 tolerated(0.1) possibly_damaging(0.832) TCGA-77-8154-01 4 96104117 96104117 A G UNC5C Silent p.V794V 0.26 TCGA-77-8154-01 5 115167562 115167562 T A ATG12 Splice_Site p.X122_splice 0.62 TCGA-77-8154-01 5 154396386 154396386 C T KIF4B Silent p.I989I 0.34 TCGA-77-8154-01 5 167855066 167855066 G A WWC1 Silent p.L613L 0.12 TCGA-77-8154-01 5 169454885 169454885 C G DOCK2 Missense_Mutation p.L1134V 0.52 tolerated(0.2) benign(0.017) TCGA-77-8154-01 5 19571927 19571927 C A CDH18 Missense_Mutation p.E338D 0.26 deleterious(0) probably_damaging(0.981) TCGA-77-8154-01 5 35066140 35066140 T C PRLR Missense_Mutation p.Y307C 0.30 tolerated(1) benign(0) TCGA-77-8154-01 5 37003386 37003386 A T NIPBL Missense_Mutation p.K1264N 0.27 deleterious(0) probably_damaging(0.972) TCGA-77-8154-01 5 41005668 41005668 T C MROH2B Missense_Mutation p.N1277D 0.16 tolerated(0.39) benign(0.098) TCGA-77-8154-01 5 45262232 45262232 C A HCN1 Missense_Mutation p.V822F 0.17 tolerated_low_confidence(0.58) benign(0.001) TCGA-77-8154-01 5 45262721 45262721 G T HCN1 Missense_Mutation p.R659S 0.21 tolerated_low_confidence(0.57) benign(0.022) TCGA-77-8154-01 5 73931955 73931955 G A ENC1 Missense_Mutation p.S119L 0.46 tolerated(0.64) benign(0.157) TCGA-77-8154-01 6 102074498 102074498 A G GRIK2 Missense_Mutation p.Y176C 0.26 deleterious(0) probably_damaging(0.994) TCGA-77-8154-01 6 110300441 110300441 G T GPR6 Silent p.A42A 0.48 TCGA-77-8154-01 6 119628118 119628118 A T MAN1A1 Missense_Mutation p.W215R 0.37 deleterious(0) probably_damaging(0.959) TCGA-77-8154-01 6 127796784 127796784 C A SOGA3 Missense_Mutation p.R796L 0.38 deleterious(0.02) possibly_damaging(0.805) TCGA-77-8154-01 6 136597098 136597098 C A BCLAF1 Missense_Mutation p.R522L 0.15 deleterious(0) benign(0.433) TCGA-77-8154-01 6 137814969 137814969 C A OLIG3 Silent p.A113A 0.31 TCGA-77-8154-01 6 144184676 144184676 T C LTV1 3'UTR 0.44 TCGA-77-8154-01 6 159654544 159654544 G A FNDC1 Silent p.R1000R 0.14 TCGA-77-8154-01 6 160430132 160430132 A G IGF2R Missense_Mutation p.Q127R 0.26 tolerated(0.09) possibly_damaging(0.554) TCGA-77-8154-01 6 24146113 24146113 A C NRSN1 Missense_Mutation p.E176A 0.32 deleterious(0.02) benign(0.304) TCGA-77-8154-01 6 26235113 26235113 T A HIST1H1D Nonsense_Mutation p.K17* 0.29 TCGA-77-8154-01 6 33140353 33140353 G A COL11A2 Missense_Mutation p.P865L 0.34 possibly_damaging(0.851) TCGA-77-8154-01 6 33169000 33169000 C T SLC39A7 5'UTR 0.36 TCGA-77-8154-01 6 41204264 41204264 A C TREML4 Silent p.R183R 0.42 TCGA-77-8154-01 6 41204266 41204266 A G TREML4 Silent p.R183R 0.40 TCGA-77-8154-01 6 42975977 42975977 A C PPP2R5D Missense_Mutation p.E299A 0.36 deleterious(0) probably_damaging(0.999) TCGA-77-8154-01 6 46660800 46660800 A T TDRD6 Missense_Mutation p.L1645F 0.23 deleterious(0.05) benign(0.002) TCGA-77-8154-01 6 57398183 57398183 C A PRIM2 Silent p.R296R 0.17 TCGA-77-8154-01 6 86346715 86346715 T G SYNCRIP Silent p.T212T 0.26 TCGA-77-8154-01 7 107848047 107848047 C T NRCAM Missense_Mutation p.G378R 0.40 deleterious(0) probably_damaging(0.98) TCGA-77-8154-01 7 120990410 120990410 C A FAM3C 3'UTR 0.41 TCGA-77-8154-01 7 128477752 128477752 C G FLNC Missense_Mutation p.D304E 0.32 tolerated(0.41) benign(0.017) TCGA-77-8154-01 7 130008386 130008386 C T CPA5 Missense_Mutation p.T420M 0.28 deleterious(0.01) possibly_damaging(0.757) TCGA-77-8154-01 7 142499894 142499894 T C TRBC2 Missense_Mutation p.M171T 0.30 tolerated(0.1) benign(0.031) TCGA-77-8154-01 7 151878622 151878626 GATTC TTT KMT2C Frame_Shift_Del p.E2107Kfs*46 0.36 TCGA-77-8154-01 7 158662592 158662592 A G WDR60 Missense_Mutation p.H21R 0.24 deleterious(0) benign(0.018) TCGA-77-8154-01 7 38433671 38433671 A T AMPH Silent p.T514T 0.27 TCGA-77-8154-01 7 62752700 62752700 G A ZNF733P RNA 0.29 TCGA-77-8154-01 7 72722823 72722823 C A NSUN5 5'Flank 0.41 TCGA-77-8154-01 7 82544533 82544533 C T PCLO Missense_Mutation p.G4257R 0.50 unknown(0) TCGA-77-8154-01 7 82544534 82544534 C T PCLO Missense_Mutation p.M4256I 0.50 unknown(0) TCGA-77-8154-01 7 8791206 8791206 C A NXPH1 Missense_Mutation p.T208K 0.19 tolerated(0.74) possibly_damaging(0.593) TCGA-77-8154-01 7 95818896 95818896 C A SLC25A13 Missense_Mutation p.R282M 0.28 tolerated(0.06) possibly_damaging(0.497) TCGA-77-8154-01 8 125498122 125498122 A C RNF139 Missense_Mutation p.K78Q 0.35 tolerated(0.24) possibly_damaging(0.795) TCGA-77-8154-01 8 13357421 13357421 G T DLC1 Missense_Mutation p.R54S 0.44 tolerated_low_confidence(0.06) benign(0.049) TCGA-77-8154-01 8 136569769 136569769 C T KHDRBS3 Missense_Mutation p.P184S 0.17 tolerated(0.17) probably_damaging(0.982) TCGA-77-8154-01 8 139149404 139149404 T G FAM135B Missense_Mutation p.K1334T 0.30 deleterious(0) benign(0.321) TCGA-77-8154-01 8 26721872 26721872 G A ADRA1A Silent p.C205C 0.44 TCGA-77-8154-01 8 28573543 28573543 C A EXTL3 5'UTR 0.57 TCGA-77-8154-01 8 30361852 30361852 C T RBPMS Missense_Mutation p.A99V 0.51 deleterious(0) probably_damaging(1) TCGA-77-8154-01 8 38250288 38250288 G T LETM2 Missense_Mutation p.Q45H 0.08 deleterious(0.02) possibly_damaging(0.497) TCGA-77-8154-01 8 41518950 41518950 C G ANK1 Intron 0.21 TCGA-77-8154-01 8 54163352 54163352 G C OPRK1 Missense_Mutation p.F82L 0.33 deleterious(0) possibly_damaging(0.669) TCGA-77-8154-01 8 67786813 67786813 G A MCMDC2 Missense_Mutation p.E93K 0.33 deleterious(0.05) probably_damaging(0.997) TCGA-77-8154-01 8 70981733 70981733 G C PRDM14 Nonsense_Mutation p.Y121* 0.41 TCGA-77-8154-01 8 88249268 88249268 C A CNBD1 Missense_Mutation p.H233Q 0.21 tolerated(0.55) benign(0.001) TCGA-77-8154-01 8 89179897 89179897 C - MMP16 Splice_Site p.X237_splice 0.21 TCGA-77-8154-01 8 97892060 97892060 G A CPQ Missense_Mutation p.V226M 0.35 deleterious(0) possibly_damaging(0.868) TCGA-77-8154-01 8 98943207 98943207 G A MATN2 Missense_Mutation p.D57N 0.31 deleterious(0) probably_damaging(0.999) TCGA-77-8154-01 9 100760846 100760846 C A ANP32B Silent p.L71L 0.37 TCGA-77-8154-01 9 115336555 115336555 A T KIAA1958 Missense_Mutation p.R65S 0.44 deleterious(0.02) possibly_damaging(0.788) TCGA-77-8154-01 9 130912599 130912599 C A LCN2 Missense_Mutation p.T74N 0.46 tolerated(0.07) possibly_damaging(0.587) TCGA-77-8154-01 9 17415786 17415786 G T CNTLN Missense_Mutation p.D933Y 0.48 deleterious(0.01) possibly_damaging(0.739) TCGA-77-8154-01 9 34647134 34647134 T G GALT Missense_Mutation p.V44G 0.45 deleterious(0) probably_damaging(1) TCGA-77-8154-01 9 90501668 90501668 C A SPATA31E1 Missense_Mutation p.P756T 0.42 tolerated(0.36) probably_damaging(0.924) TCGA-77-8154-01 9 95077449 95077449 G A NOL8 Silent p.L486L 0.29 TCGA-77-8154-01 X 104999246 104999246 A T IL1RAPL2 Missense_Mutation p.E423V 0.62 deleterious(0.04) probably_damaging(0.998) TCGA-77-8154-01 X 138667334 138667334 C T MCF2 Nonsense_Mutation p.W955* 0.62 TCGA-77-8154-01 X 63409811 63409811 G A AMER1 Missense_Mutation p.S1119F 0.82 tolerated(0.21) benign(0.007) TCGA-77-8154-01 X 86873079 86873079 G A KLHL4 Missense_Mutation p.G291E 0.47 deleterious(0) possibly_damaging(0.571) TCGA-77-8156-01 10 101996689 101996689 T C CWF19L1 Missense_Mutation p.D431G 0.10 tolerated(0.14) benign(0.099) TCGA-77-8156-01 10 102265149 102265149 C A SEC31B Missense_Mutation p.W383L 0.12 deleterious(0) probably_damaging(0.998) TCGA-77-8156-01 10 108716289 108716289 G A SORCS1 Missense_Mutation p.T203I 0.09 tolerated(0.13) probably_damaging(0.947) TCGA-77-8156-01 10 114057990 114057990 G A TECTB Splice_Site p.X278_splice 0.28 TCGA-77-8156-01 10 118355776 118355776 G T PNLIPRP1 Silent p.L172L 0.09 TCGA-77-8156-01 10 15325884 15325884 C T FAM171A1 Silent p.R106R 0.08 TCGA-77-8156-01 10 49812852 49812852 C A ARHGAP22 5'UTR 0.08 TCGA-77-8156-01 10 50948834 50948834 C T OGDHL Missense_Mutation p.V688M 0.07 tolerated(0.13) benign(0.315) TCGA-77-8156-01 10 50953976 50953976 C A OGDHL Silent p.P448P 0.08 TCGA-77-8156-01 10 70450806 70450806 G T TET1 Silent p.T1882T 0.08 TCGA-77-8156-01 10 72195577 72195577 G T NODAL Missense_Mutation p.P119H 0.16 tolerated(0.55) possibly_damaging(0.735) TCGA-77-8156-01 10 99003842 99003842 T C ARHGAP19 Silent p.V356V 0.12 TCGA-77-8156-01 11 119025056 119025056 A T ABCG4 Missense_Mutation p.Q148L 0.08 deleterious(0) probably_damaging(0.99) TCGA-77-8156-01 11 119025057 119025057 A T ABCG4 Missense_Mutation p.Q148H 0.09 deleterious(0) probably_damaging(0.995) TCGA-77-8156-01 11 122659818 122659818 T C UBASH3B Missense_Mutation p.V261A 0.16 tolerated(0.63) benign(0.3) TCGA-77-8156-01 11 123900875 123900875 C A OR10G8 Silent p.P182P 0.05 TCGA-77-8156-01 11 124005673 124005673 A G VWA5A Missense_Mutation p.K431E 0.17 deleterious(0.01) possibly_damaging(0.854) TCGA-77-8156-01 11 124189378 124189378 C A OR8D2 Missense_Mutation p.G239V 0.10 deleterious(0.01) benign(0.159) TCGA-77-8156-01 11 1264297 1264297 C A MUC5B Missense_Mutation p.P2063T 0.11 unknown(0) TCGA-77-8156-01 11 132016309 132016309 G C NTM Missense_Mutation p.E101Q 0.04 tolerated(0.88) benign(0.015) TCGA-77-8156-01 11 18723218 18723218 G T TMEM86A Missense_Mutation p.G129C 0.12 tolerated(0.24) benign(0.014) TCGA-77-8156-01 11 55587633 55587633 T C OR5D18 Silent p.N176N 0.13 TCGA-77-8156-01 11 56510954 56510954 A C OR9G4 Missense_Mutation p.C112G 0.10 deleterious(0) probably_damaging(0.998) TCGA-77-8156-01 11 59224571 59224571 G T OR4D6 Silent p.V46V 0.14 TCGA-77-8156-01 11 59224572 59224572 G T OR4D6 Missense_Mutation p.V47F 0.11 deleterious(0.02) benign(0.167) TCGA-77-8156-01 11 59225131 59225131 G A OR4D6 Missense_Mutation p.R233Q 0.16 tolerated(0.07) benign(0.043) TCGA-77-8156-01 11 59271464 59271464 G T OR4D11 Missense_Mutation p.G139V 0.06 tolerated(0.25) possibly_damaging(0.675) TCGA-77-8156-01 11 59271465 59271465 G T OR4D11 Silent p.G139G 0.06 TCGA-77-8156-01 11 6048767 6048767 G A OR56A1 Silent p.I56I 0.16 TCGA-77-8156-01 11 6232808 6232808 C T FAM160A2 Silent p.S963S 0.06 TCGA-77-8156-01 11 64571680 64571680 G C MEN1 3'UTR 0.14 TCGA-77-8156-01 11 6470639 6470639 C A TRIM3 Missense_Mutation p.G660V 0.13 deleterious(0) probably_damaging(1) TCGA-77-8156-01 11 72423309 72423309 C T ARAP1 Silent p.P318P 0.05 TCGA-77-8156-01 11 95712515 95712515 G A MAML2 Missense_Mutation p.A1023V 0.25 unknown(0) TCGA-77-8156-01 12 100441361 100441361 T C UHRF1BP1L Missense_Mutation p.H1343R 0.09 tolerated(0.34) benign(0.188) TCGA-77-8156-01 12 117923486 117923486 C A KSR2 Nonsense_Mutation p.G744* 0.15 TCGA-77-8156-01 12 117923487 117923487 C A KSR2 Missense_Mutation p.K743N 0.15 deleterious(0) probably_damaging(0.998) TCGA-77-8156-01 12 118467596 118467596 C T RFC5 Nonsense_Mutation p.R298* 0.07 TCGA-77-8156-01 12 18691113 18691113 C A PIK3C2G Missense_Mutation p.T1075N 0.36 deleterious(0.01) probably_damaging(0.982) TCGA-77-8156-01 12 30867961 30867961 G C CAPRIN2 Missense_Mutation p.S811C 0.04 deleterious(0.01) possibly_damaging(0.896) TCGA-77-8156-01 12 4870200 4870200 A T GALNT8 Missense_Mutation p.Y417F 0.09 deleterious(0) possibly_damaging(0.548) TCGA-77-8156-01 12 57600429 57600429 G A LRP1 Missense_Mutation p.G3922S 0.10 possibly_damaging(0.606) TCGA-77-8156-01 12 58350648 58350648 G C XRCC6BP1 Missense_Mutation p.R239P 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-77-8156-01 12 7046385 7046385 C T ATN1 Missense_Mutation p.A652V 0.11 benign(0.347) TCGA-77-8156-01 12 7842565 7842565 G A GDF3 Missense_Mutation p.S335F 0.06 deleterious(0) probably_damaging(1) TCGA-77-8156-01 12 78515988 78515988 A G NAV3 Missense_Mutation p.T1340A 0.08 tolerated(0.22) benign(0.075) TCGA-77-8156-01 12 8073948 8073948 C A SLC2A3 3'UTR 0.15 TCGA-77-8156-01 13 108518208 108518208 C G FAM155A Missense_Mutation p.C246S 0.29 deleterious(0) probably_damaging(0.99) TCGA-77-8156-01 13 28959136 28959136 T A FLT1 Missense_Mutation p.S668C 0.19 deleterious(0) probably_damaging(0.956) TCGA-77-8156-01 13 32977338 32977338 C G N4BP2L1 Splice_Site p.X158_splice 0.33 TCGA-77-8156-01 13 79933788 79933788 A G RBM26 Missense_Mutation p.V484A 0.21 tolerated(0.14) probably_damaging(0.995) TCGA-77-8156-01 14 101349465 101349465 C G RTL1 Missense_Mutation p.G554A 0.26 tolerated(0.1) possibly_damaging(0.807) TCGA-77-8156-01 14 20404333 20404333 G - OR4K1 Frame_Shift_Del p.G170Vfs*15 0.12 TCGA-77-8156-01 14 34419762 34419762 G A EGLN3 Missense_Mutation p.A66V 0.31 tolerated(0.14) benign(0.004) TCGA-77-8156-01 14 47530570 47530570 T C MDGA2 Silent p.T469T 0.12 TCGA-77-8156-01 14 79181199 79181199 G T NRXN3 Missense_Mutation p.E214D 0.22 tolerated(0.22) possibly_damaging(0.656) TCGA-77-8156-01 15 25959110 25959110 C T ATP10A Silent p.Q685Q 0.14 TCGA-77-8156-01 15 42147902 42147902 G A SPTBN5 Silent p.V3021V 0.20 TCGA-77-8156-01 15 45453950 45453950 C T DUOX1 Missense_Mutation p.R1291W 0.19 deleterious(0) possibly_damaging(0.67) TCGA-77-8156-01 15 64067154 64067154 C T HERC1 Silent p.S223S 0.16 TCGA-77-8156-01 15 86312533 86312533 C A KLHL25 Missense_Mutation p.R170L 0.22 deleterious(0.05) probably_damaging(0.997) TCGA-77-8156-01 15 89804839 89804839 A G FANCI Silent p.L104L 0.29 TCGA-77-8156-01 15 98514373 98514373 C G ARRDC4 Missense_Mutation p.P405A 0.20 deleterious(0.01) possibly_damaging(0.735) TCGA-77-8156-01 16 27539929 27539929 C A GTF3C1 Missense_Mutation p.K321N 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-77-8156-01 16 28837623 28837623 G A ATXN2L Silent p.R176R 0.18 TCGA-77-8156-01 16 31336847 31336847 C T ITGAM Silent p.R845R 0.22 TCGA-77-8156-01 16 31925956 31925956 A G ZNF267 Missense_Mutation p.Y129C 0.16 deleterious(0.04) benign(0.425) TCGA-77-8156-01 17 12862091 12862091 C T ARHGAP44 Missense_Mutation p.A467V 0.10 deleterious(0.05) benign(0.04) TCGA-77-8156-01 17 18082211 18082211 C T MYO15A 3'UTR 0.09 TCGA-77-8156-01 17 33768668 33768668 G A SLFN13 Silent p.I612I 0.20 TCGA-77-8156-01 17 37886501 37886501 C T MIEN1 Missense_Mutation p.A45T 0.07 tolerated(0.41) benign(0.129) TCGA-77-8156-01 17 40765669 40765669 T G TUBG1 Missense_Mutation p.V204G 0.28 deleterious(0) probably_damaging(0.982) TCGA-77-8156-01 17 40815486 40815486 A T TUBG2 Missense_Mutation p.T191S 0.09 tolerated(0.09) probably_damaging(0.999) TCGA-77-8156-01 17 48752788 48752788 C A ABCC3 Missense_Mutation p.L889M 0.10 tolerated(0.28) benign(0.04) TCGA-77-8156-01 17 49371398 49371398 G T UTP18 Silent p.L546L 0.38 TCGA-77-8156-01 17 5984092 5984092 C T WSCD1 Silent p.V38V 0.14 TCGA-77-8156-01 17 72613449 72613449 C T CD300E Missense_Mutation p.G66R 0.07 deleterious(0.04) possibly_damaging(0.546) TCGA-77-8156-01 17 7484803 7484803 C T CD68 Missense_Mutation p.R347C 0.04 deleterious(0) probably_damaging(0.991) TCGA-77-8156-01 17 7574025 7574025 C A TP53 Silent p.G334G 0.24 TCGA-77-8156-01 17 7574026 7574026 C A TP53 Missense_Mutation p.G334V 0.24 deleterious(0) probably_damaging(0.973) TCGA-77-8156-01 18 11864603 11864603 C T GNAL Silent p.F283F 0.08 TCGA-77-8156-01 18 29038500 29038501 - A DSG3 Frame_Shift_Ins p.N105Kfs*6 0.41 TCGA-77-8156-01 18 3119927 3119927 C T MYOM1 Missense_Mutation p.G1020S 0.08 tolerated(0.12) probably_damaging(0.951) TCGA-77-8156-01 18 31322969 31322969 A G ASXL3 Missense_Mutation p.T1053A 0.21 benign(0.04) TCGA-77-8156-01 18 77806015 77806015 G C RBFA Missense_Mutation p.G298R 0.14 deleterious(0) possibly_damaging(0.903) TCGA-77-8156-01 19 10096518 10096518 C T COL5A3 Silent p.K802K 0.16 TCGA-77-8156-01 19 10657572 10657572 C T ATG4D Missense_Mutation p.S184F 0.25 deleterious(0.02) probably_damaging(0.995) TCGA-77-8156-01 19 12739376 12739376 G A ZNF791 Missense_Mutation p.V345I 0.13 tolerated(0.45) benign(0.305) TCGA-77-8156-01 19 13340950 13340950 G C CACNA1A Missense_Mutation p.P1825R 0.06 possibly_damaging(0.904) TCGA-77-8156-01 19 13397600 13397600 C A CACNA1A Silent p.L1090L 0.12 TCGA-77-8156-01 19 13941547 13941547 C T ZSWIM4 Missense_Mutation p.R885C 0.11 deleterious(0) unknown(0) TCGA-77-8156-01 19 15839451 15839451 G T OR10H2 Missense_Mutation p.V200L 0.26 tolerated(0.13) benign(0.131) TCGA-77-8156-01 19 22157258 22157258 C G ZNF208 Missense_Mutation p.R193T 0.23 tolerated(0.12) benign(0.086) TCGA-77-8156-01 19 22786079 22786079 G T AC011467.1 3'Flank 0.27 TCGA-77-8156-01 19 31769023 31769023 A T TSHZ3 Missense_Mutation p.M559K 0.20 tolerated(0.07) benign(0.225) TCGA-77-8156-01 19 35832028 35832028 C A CD22 Silent p.A498A 0.27 TCGA-77-8156-01 19 36033264 36033264 T A GAPDHS Missense_Mutation p.Y165N 0.32 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-77-8156-01 19 40433609 40433609 C A FCGBP Silent p.V220V 0.17 TCGA-77-8156-01 19 40434001 40434001 C A FCGBP Missense_Mutation p.V90F 0.22 possibly_damaging(0.809) TCGA-77-8156-01 19 40434002 40434002 C G FCGBP Missense_Mutation p.M89I 0.21 benign(0.032) TCGA-77-8156-01 19 45001384 45001384 C A ZNF180 Missense_Mutation p.M28I 0.28 deleterious(0.03) possibly_damaging(0.827) TCGA-77-8156-01 19 4512516 4512516 C A PLIN4 Missense_Mutation p.G472C 0.26 tolerated(0.09) benign(0.103) TCGA-77-8156-01 19 50949149 50949149 T A MYBPC2 Silent p.G382G 0.26 TCGA-77-8156-01 19 52521745 52521745 T C ZNF614 Silent p.E6E 0.07 TCGA-77-8156-01 19 55716777 55716777 T A PTPRH Missense_Mutation p.E179V 0.28 unknown(0) TCGA-77-8156-01 19 55855183 55855183 G C SUV420H2 Missense_Mutation p.W174C 0.12 deleterious(0) probably_damaging(0.999) TCGA-77-8156-01 19 56424171 56424171 C A NLRP13 Nonsense_Mutation p.E338* 0.16 TCGA-77-8156-01 19 7591409 7591409 G T MCOLN1 Missense_Mutation p.G108C 0.25 deleterious(0) probably_damaging(0.928) TCGA-77-8156-01 19 9087574 9087574 G A MUC16 Missense_Mutation p.P1414L 0.21 unknown(0) TCGA-77-8156-01 1 109801659 109801659 C T CELSR2 Missense_Mutation p.R1306C 0.15 deleterious(0) possibly_damaging(0.677) TCGA-77-8156-01 1 12908163 12908163 C A HNRNPCL1 5'UTR 0.16 TCGA-77-8156-01 1 145439019 145439019 G A TXNIP Missense_Mutation p.E73K 0.08 tolerated(0.3) benign(0.38) TCGA-77-8156-01 1 149876532 149876532 T C SV2A 3'UTR 0.46 TCGA-77-8156-01 1 155657911 155657911 G C YY1AP1 Silent p.T115T 0.18 TCGA-77-8156-01 1 156821984 156821984 C T INSRR Splice_Site p.X213_splice 0.20 TCGA-77-8156-01 1 158606546 158606546 T G SPTA1 Missense_Mutation p.K1732T 0.05 deleterious(0) probably_damaging(0.998) TCGA-77-8156-01 1 159828676 159828676 C T VSIG8 Missense_Mutation p.G26R 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-77-8156-01 1 160523268 160523268 A T CD84 Silent p.R220R 0.13 TCGA-77-8156-01 1 165533006 165533006 G A LRRC52 Missense_Mutation p.R296Q 0.05 tolerated_low_confidence(0.09) benign(0.078) TCGA-77-8156-01 1 167096504 167096504 G T DUSP27 Silent p.V712V 0.10 TCGA-77-8156-01 1 167096505 167096505 G T DUSP27 Missense_Mutation p.G713W 0.10 deleterious(0) probably_damaging(0.992) TCGA-77-8156-01 1 169762455 169762455 T C METTL18 Missense_Mutation p.K128E 0.47 deleterious(0.01) benign(0.008) TCGA-77-8156-01 1 17312989 17312989 G C ATP13A2 Missense_Mutation p.T1125S 0.23 tolerated(0.06) benign(0.017) TCGA-77-8156-01 1 18703363 18703363 G A IGSF21 Missense_Mutation p.E391K 0.24 tolerated(0.17) benign(0.038) TCGA-77-8156-01 1 198248096 198248096 C G NEK7 Missense_Mutation p.A165G 0.11 deleterious(0.04) benign(0.443) TCGA-77-8156-01 1 198725072 198725072 C T PTPRC Missense_Mutation p.T1228I 0.15 tolerated(0.27) benign(0.045) TCGA-77-8156-01 1 203143652 203143652 T C MYBPH Silent p.G138G 0.10 TCGA-77-8156-01 1 208061019 208061019 C T CD34 3'UTR 0.17 TCGA-77-8156-01 1 215821899 215821899 G T USH2A Silent p.P4851P 0.17 TCGA-77-8156-01 1 217793479 217793479 C A GPATCH2 Missense_Mutation p.R140I 0.07 deleterious(0) probably_damaging(0.999) TCGA-77-8156-01 1 229661741 229661741 G A ABCB10 Silent p.I616I 0.06 TCGA-77-8156-01 1 240656462 240656462 T C GREM2 Missense_Mutation p.Y105C 0.24 deleterious(0) probably_damaging(0.987) TCGA-77-8156-01 1 247752304 247752304 T A OR2G2 Missense_Mutation p.S215T 0.17 tolerated(0.41) benign(0.256) TCGA-77-8156-01 1 248458284 248458284 G T OR2T12 Silent p.I199I 0.16 TCGA-77-8156-01 1 248570327 248570327 C A OR2T1 Missense_Mutation p.N344K 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-77-8156-01 1 29557402 29557402 G A MECR Missense_Mutation p.T6I 0.18 deleterious_low_confidence(0.03) benign(0.006) TCGA-77-8156-01 1 75038548 75038549 - C C1orf173 Frame_Shift_Ins p.A949Gfs*23 0.21 TCGA-77-8156-01 1 77509902 77509902 A G ST6GALNAC5 Missense_Mutation p.H92R 0.35 probably_damaging(1) TCGA-77-8156-01 20 16488729 16488729 T A KIF16B Missense_Mutation p.L191F 0.08 deleterious(0) probably_damaging(1) TCGA-77-8156-01 20 18724882 18724882 G T DTD1 Nonsense_Mutation p.E206* 0.16 TCGA-77-8156-01 20 18724883 18724883 A C DTD1 Missense_Mutation p.E206A 0.16 deleterious_low_confidence(0) benign(0.411) TCGA-77-8156-01 20 19955468 19955468 G C RIN2 Missense_Mutation p.G316R 0.20 deleterious(0.02) benign(0.371) TCGA-77-8156-01 20 30070133 30070133 C A REM1 Missense_Mutation p.A156D 0.12 deleterious(0) probably_damaging(1) TCGA-77-8156-01 20 30525212 30525212 G T TTLL9 Missense_Mutation p.V340F 0.06 deleterious(0) probably_damaging(0.993) TCGA-77-8156-01 20 3767015 3767015 G C CENPB Missense_Mutation p.P39R 0.05 tolerated(0.54) unknown(0) TCGA-77-8156-01 21 31802923 31802923 T G KRTAP13-4 Missense_Mutation p.S110R 0.11 tolerated(0.34) benign(0.02) TCGA-77-8156-01 22 18766999 18766999 G A GGT3P RNA 0.05 TCGA-77-8156-01 22 26709761 26709761 T A SEZ6L Silent p.A636A 0.17 TCGA-77-8156-01 22 31324126 31324126 G T MORC2 Missense_Mutation p.D908E 0.10 tolerated(0.09) benign(0.033) TCGA-77-8156-01 22 31685511 31685511 T C PIK3IP1 Missense_Mutation p.K161R 0.20 tolerated(0.08) possibly_damaging(0.463) TCGA-77-8156-01 22 36052436 36052436 G C APOL6 5'UTR 0.11 TCGA-77-8156-01 22 40283550 40283550 C A ENTHD1 Missense_Mutation p.W68L 0.20 deleterious(0) probably_damaging(1) TCGA-77-8156-01 2 119600541 119600541 C A EN1 Silent p.T384T 0.17 TCGA-77-8156-01 2 160619447 160619447 C T MARCH7 Silent p.C650C 0.12 TCGA-77-8156-01 2 179427915 179427915 G A TTN Silent p.A27648A 0.31 TCGA-77-8156-01 2 179427916 179427916 G T TTN Missense_Mutation p.A27648D 0.31 TCGA-77-8156-01 2 179433541 179433541 G A TTN Missense_Mutation p.A25773V 0.27 TCGA-77-8156-01 2 209047738 209047738 G A C2orf80 Nonsense_Mutation p.Q53* 0.07 TCGA-77-8156-01 2 219000376 219000376 G T CXCR2 Missense_Mutation p.E284D 0.23 tolerated(0.19) possibly_damaging(0.841) TCGA-77-8156-01 2 232597628 232597628 A C PDE6D 3'UTR 0.29 TCGA-77-8156-01 2 27905207 27905207 T G SLC4A1AP Nonsense_Mutation p.L619* 0.20 TCGA-77-8156-01 2 44078921 44078921 G T ABCG8 Missense_Mutation p.R174L 0.08 deleterious(0.03) benign(0.359) TCGA-77-8156-01 2 44078922 44078922 G T ABCG8 Silent p.R174R 0.08 TCGA-77-8156-01 2 48873911 48873911 G T STON1-GTF2A1L Missense_Mutation p.Q940H 0.09 tolerated(0.15) benign(0.006) TCGA-77-8156-01 2 48873912 48873912 G T STON1-GTF2A1L Nonsense_Mutation p.E941* 0.09 TCGA-77-8156-01 2 68962326 68962326 A T ARHGAP25 5'UTR 0.32 TCGA-77-8156-01 2 77746454 77746454 G A LRRTM4 Missense_Mutation p.R181W 0.32 deleterious(0) probably_damaging(1) TCGA-77-8156-01 2 89156831 89156831 G C IGKC 3'UTR 0.15 TCGA-77-8156-01 3 108393010 108393010 T G DZIP3 Missense_Mutation p.V892G 0.27 deleterious(0.01) benign(0.193) TCGA-77-8156-01 3 113374163 113374163 G A KIAA2018 Silent p.S2122S 0.10 TCGA-77-8156-01 3 118649075 118649075 C T IGSF11 Missense_Mutation p.V34M 0.10 deleterious(0) probably_damaging(0.999) TCGA-77-8156-01 3 124449436 124449436 C A UMPS Missense_Mutation p.L40M 0.05 deleterious(0) possibly_damaging(0.873) TCGA-77-8156-01 3 124462803 124462803 A G UMPS Missense_Mutation p.I439V 0.17 tolerated(0.23) benign(0.019) TCGA-77-8156-01 3 137786399 137786399 T A DZIP1L Missense_Mutation p.N659I 0.08 deleterious(0.05) benign(0.372) TCGA-77-8156-01 3 151046565 151046565 T A P2RY13 Silent p.T93T 0.23 TCGA-77-8156-01 3 183655832 183655832 C T ABCC5 Silent p.G1237G 0.05 TCGA-77-8156-01 3 185167810 185167810 G C MAP3K13 Missense_Mutation p.C378S 0.05 deleterious(0) probably_damaging(0.996) TCGA-77-8156-01 3 190936734 190936734 C G OSTN Missense_Mutation p.H101D 0.38 tolerated(0.22) possibly_damaging(0.709) TCGA-77-8156-01 3 3078882 3078882 G T CNTN4 Silent p.G654G 0.09 TCGA-77-8156-01 3 52833442 52833442 C A ITIH3 Missense_Mutation p.P282T 0.28 deleterious(0.01) benign(0.342) TCGA-77-8156-01 3 68788269 68788269 G T FAM19A4 Nonsense_Mutation p.S123* 0.20 TCGA-77-8156-01 4 185679024 185679024 C A ACSL1 Missense_Mutation p.W611C 0.12 deleterious(0) probably_damaging(0.944) TCGA-77-8156-01 4 186544156 186544156 G A SORBS2 Silent p.C905C 0.14 TCGA-77-8156-01 4 187454936 187454936 A G MTNR1A Silent p.F320F 0.12 TCGA-77-8156-01 4 46125933 46125933 G T GABRG1 5'UTR 0.73 TCGA-77-8156-01 4 83350561 83350561 T C HNRNPDL Missense_Mutation p.I95V 0.07 deleterious_low_confidence(0.04) benign(0.031) TCGA-77-8156-01 4 94690499 94690499 G T GRID2 Silent p.G833G 0.15 TCGA-77-8156-01 4 954946 954946 T G DGKQ Missense_Mutation p.Q873P 0.06 deleterious(0) probably_damaging(1) TCGA-77-8156-01 5 11384782 11384782 A G CTNND2 Missense_Mutation p.L391P 0.06 deleterious(0) probably_damaging(0.999) TCGA-77-8156-01 5 1217052 1217052 C G SLC6A19 Missense_Mutation p.L389V 0.06 deleterious(0) probably_damaging(0.982) TCGA-77-8156-01 5 136974680 136974680 T A KLHL3 Missense_Mutation p.D394V 0.26 deleterious(0) benign(0.167) TCGA-77-8156-01 5 140222948 140222948 G T PCDHA8 Missense_Mutation p.R681M 0.25 deleterious_low_confidence(0.01) benign(0.401) TCGA-77-8156-01 5 140736243 140736243 C T PCDHGA4 Silent p.A492A 0.19 TCGA-77-8156-01 5 140745556 140745556 G C PCDHGA5 Silent p.L553L 0.24 TCGA-77-8156-01 5 150051349 150051349 C A MYOZ3 Missense_Mutation p.N101K 0.22 deleterious(0.01) possibly_damaging(0.809) TCGA-77-8156-01 5 156769988 156769988 T G FNDC9 Missense_Mutation p.K186T 0.09 tolerated(0.11) possibly_damaging(0.603) TCGA-77-8156-01 5 175110873 175110873 G T HRH2 Missense_Mutation p.A213S 0.10 deleterious(0.01) probably_damaging(1) TCGA-77-8156-01 5 179728590 179728590 G C GFPT2 Missense_Mutation p.L675V 0.30 deleterious(0) probably_damaging(0.998) TCGA-77-8156-01 5 180052901 180052901 C A FLT4 Missense_Mutation p.W463C 0.09 tolerated(0.05) probably_damaging(0.991) TCGA-77-8156-01 5 39383269 39383269 A G DAB2 Silent p.S264S 0.10 TCGA-77-8156-01 5 50689406 50689406 A T ISL1 Missense_Mutation p.T338S 0.11 tolerated(0.16) possibly_damaging(0.601) TCGA-77-8156-01 5 66461856 66461856 C T MAST4 Silent p.D2283D 0.13 TCGA-77-8156-01 5 78407669 78407669 G A BHMT 5'UTR 0.25 TCGA-77-8156-01 6 111695157 111695157 G C REV3L Missense_Mutation p.I1467M 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.453) TCGA-77-8156-01 6 131191149 131191149 C G EPB41L2 Missense_Mutation p.G721R 0.10 deleterious(0.02) probably_damaging(0.998) TCGA-77-8156-01 6 133035033 133035033 C A VNN1 Nonsense_Mutation p.E48* 0.10 TCGA-77-8156-01 6 133035034 133035034 C A VNN1 Missense_Mutation p.E47D 0.10 tolerated(0.26) benign(0.178) TCGA-77-8156-01 6 137815218 137815218 G A OLIG3 Silent p.H30H 0.11 TCGA-77-8156-01 6 159458034 159458034 C T TAGAP Missense_Mutation p.G341S 0.18 tolerated(0.52) benign(0.021) TCGA-77-8156-01 6 160222173 160222173 C T PNLDC1 Silent p.L44L 0.10 TCGA-77-8156-01 6 29573418 29573418 A G GABBR1 Silent p.Y789Y 0.25 TCGA-77-8156-01 6 31513242 31513242 A G ATP6V1G2 Silent p.L100L 0.14 TCGA-77-8156-01 6 31856831 31856831 G A EHMT2 Silent p.G377G 0.15 TCGA-77-8156-01 6 32180356 32180356 A C NOTCH4 Missense_Mutation p.C859G 0.08 deleterious(0) probably_damaging(0.996) TCGA-77-8156-01 6 35285962 35285962 C T DEF6 Missense_Mutation p.A310V 0.09 tolerated(0.06) probably_damaging(0.99) TCGA-77-8156-01 6 39267322 39267322 G T KCNK17 Missense_Mutation p.P294T 0.08 tolerated(0.16) benign(0.013) TCGA-77-8156-01 6 39284631 39284631 G A KCNK16 Silent p.G196G 0.09 TCGA-77-8156-01 6 44145044 44145044 G T CAPN11 Missense_Mutation p.A435S 0.14 tolerated(0.8) benign(0.007) TCGA-77-8156-01 6 45296501 45296501 G A RUNX2 Missense_Mutation p.C13Y 0.13 tolerated_low_confidence(0.98) probably_damaging(0.962) TCGA-77-8156-01 6 47471107 47471107 A G CD2AP Silent p.L32L 0.33 TCGA-77-8156-01 6 52441617 52441617 C A TRAM2 Missense_Mutation p.V33F 0.29 tolerated(1) benign(0.005) TCGA-77-8156-01 6 56470809 56470809 G C DST Intron 0.18 TCGA-77-8156-01 6 69640514 69640514 G C BAI3 Missense_Mutation p.R274T 0.28 tolerated(0.12) benign(0.023) TCGA-77-8156-01 6 69640515 69640515 G T BAI3 Missense_Mutation p.R274S 0.29 tolerated(0.17) benign(0.016) TCGA-77-8156-01 6 97247438 97247438 C G GPR63 Missense_Mutation p.S57T 0.13 tolerated(0.58) benign(0) TCGA-77-8156-01 7 100253146 100253146 C A ACTL6B Missense_Mutation p.G56W 0.27 deleterious(0) probably_damaging(0.928) TCGA-77-8156-01 7 100491368 100491368 G A ACHE Silent p.D162D 0.08 TCGA-77-8156-01 7 100683965 100683965 G T MUC17 Missense_Mutation p.A3090S 0.06 benign(0.441) TCGA-77-8156-01 7 102769015 102769015 G A NAPEPLD Missense_Mutation p.P70L 0.28 deleterious(0.05) benign(0.017) TCGA-77-8156-01 7 107684309 107684309 G A LAMB4 Silent p.S1453S 0.24 TCGA-77-8156-01 7 121716629 121716629 A G AASS Missense_Mutation p.F899L 0.14 tolerated(1) benign(0.013) TCGA-77-8156-01 7 131913187 131913187 C T PLXNA4 Missense_Mutation p.R549H 0.07 tolerated(0.56) possibly_damaging(0.803) TCGA-77-8156-01 7 142723665 142723665 G A OR9A2 Silent p.C185C 0.10 TCGA-77-8156-01 7 150738269 150738269 A C ABCB8 Missense_Mutation p.T523P 0.13 tolerated(0.07) possibly_damaging(0.708) TCGA-77-8156-01 7 154172123 154172123 G T DPP6 Splice_Site p.X153_splice 0.14 TCGA-77-8156-01 7 154684675 154684675 G T DPP6 3'UTR 0.10 TCGA-77-8156-01 7 20691115 20691115 C G ABCB5 Missense_Mutation p.Q469E 0.20 deleterious(0.01) possibly_damaging(0.801) TCGA-77-8156-01 7 31904666 31904666 C T PDE1C Missense_Mutation p.E274K 0.14 tolerated(0.13) possibly_damaging(0.9) TCGA-77-8156-01 7 35733908 35733908 G A HERPUD2 Silent p.T11T 0.15 TCGA-77-8156-01 7 37172800 37172800 G A ELMO1 Missense_Mutation p.P376S 0.08 deleterious(0) probably_damaging(0.955) TCGA-77-8156-01 7 38389071 38389071 C T TRGV5 Missense_Mutation p.G80E 0.62 deleterious(0.03) probably_damaging(0.983) TCGA-77-8156-01 7 43909071 43909071 C A MRPS24 Silent p.G8G 0.20 TCGA-77-8156-01 7 55273090 55273090 A G EGFR Missense_Mutation p.Y1138C 0.26 deleterious(0) probably_damaging(0.999) TCGA-77-8156-01 7 55886846 55886846 C A SEPT14 Missense_Mutation p.R264L 0.20 deleterious(0.02) benign(0.223) TCGA-77-8156-01 7 71252873 71252873 G C CALN1 Missense_Mutation p.Q225E 0.11 tolerated(0.05) benign(0.025) TCGA-77-8156-01 7 73008158 73008158 C T MLXIPL 3'UTR 0.15 TCGA-77-8156-01 7 73513537 73513537 A T LIMK1 Missense_Mutation p.T193S 0.25 tolerated(1) benign(0.01) TCGA-77-8156-01 7 77998482 77998482 T C MAGI2 Missense_Mutation p.Y365C 0.32 deleterious(0) probably_damaging(1) TCGA-77-8156-01 7 81964499 81964499 T A CACNA2D1 Silent p.A82A 0.27 TCGA-77-8156-01 7 82387953 82387953 C A PCLO Missense_Mutation p.D5123Y 0.17 unknown(0) TCGA-77-8156-01 7 82595356 82595356 G C PCLO Missense_Mutation p.P1250A 0.14 unknown(0) TCGA-77-8156-01 7 87133748 87133748 C T ABCB1 Silent p.L1218L 0.14 TCGA-77-8156-01 7 8791165 8791165 T C NXPH1 Silent p.C194C 0.20 TCGA-77-8156-01 7 93065341 93065341 C T CALCR Missense_Mutation p.V392I 0.20 tolerated(0.45) benign(0.266) TCGA-77-8156-01 8 145634521 145634521 C - CPSF1 Frame_Shift_Del p.A8Rfs*24 0.09 TCGA-77-8156-01 8 27509143 27509143 G C SCARA3 Silent p.L75L 0.23 TCGA-77-8156-01 8 28573554 28573554 G T EXTL3 5'UTR 0.22 TCGA-77-8156-01 8 33361363 33361363 C G TTI2 Missense_Mutation p.D340H 0.16 tolerated(0.14) benign(0.232) TCGA-77-8156-01 8 6913013 6913013 A C DEFA5 Silent p.R75R 0.15 TCGA-77-8156-01 8 92983068 92983068 C A RUNX1T1 Missense_Mutation p.V464F 0.12 deleterious(0) probably_damaging(0.995) TCGA-77-8156-01 9 131071901 131071901 G A TRUB2 Silent p.P308P 0.14 TCGA-77-8156-01 9 132382881 132382881 C T C9orf50 5'UTR 0.17 TCGA-77-8156-01 9 138591359 138591359 A T SOHLH1 5'UTR 0.19 TCGA-77-8156-01 9 5534978 5534978 G A PDCD1LG2 Missense_Mutation p.E97K 0.07 deleterious(0) benign(0.038) TCGA-77-8156-01 9 73151946 73151946 A G TRPM3 Silent p.G1349G 0.17 TCGA-77-8156-01 9 79890527 79890527 G T VPS13A Missense_Mutation p.V876L 0.14 tolerated(0.25) benign(0.004) TCGA-77-8156-01 X 105905493 105905493 A C CXorf57 Missense_Mutation p.K743Q 0.43 tolerated(0.16) benign(0.046) TCGA-77-8156-01 X 112022754 112022754 T A AMOT Silent p.A876A 0.54 TCGA-77-8156-01 X 120008895 120008895 G T CT47B1 Missense_Mutation p.D210E 0.14 tolerated(0.07) unknown(0) TCGA-77-8156-01 X 135485456 135485456 G A GPR112 Missense_Mutation p.G2877R 0.39 deleterious(0) probably_damaging(0.996) TCGA-77-8156-01 X 135485457 135485457 G T GPR112 Missense_Mutation p.G2877V 0.36 deleterious(0) probably_damaging(0.999) TCGA-77-8156-01 X 18234833 18234833 C T BEND2 Missense_Mutation p.D16N 0.27 deleterious_low_confidence(0.01) probably_damaging(0.959) TCGA-77-8156-01 X 21990679 21990679 C T SMS Missense_Mutation p.R107W 0.17 deleterious(0.01) possibly_damaging(0.907) TCGA-77-8156-01 X 45016965 45016965 G A CXorf36 Silent p.L223L 0.44 TCGA-77-8156-01 X 54114336 54114336 G T FAM120C Missense_Mutation p.T830K 0.29 deleterious(0.01) probably_damaging(0.913) TCGA-77-A5FZ-01 20 29978261 29978261 G T DEFB119 Missense_Mutation p.A9D 0.03 deleterious(0.01) unknown(0) TCGA-77-A5G1-01 10 104139118 104139118 G A GBF1 Silent p.L1523L 0.08 TCGA-77-A5G1-01 10 27322234 27322234 C A ANKRD26 Nonsense_Mutation p.E1243* 0.11 TCGA-77-A5G1-01 10 31816109 31816109 G T ZEB1 Missense_Mutation p.A1099S 0.11 tolerated_low_confidence(0.06) benign(0.364) TCGA-77-A5G1-01 10 50532275 50532275 C A C10orf71 Missense_Mutation p.A562D 0.20 tolerated(0.15) benign(0.081) TCGA-77-A5G1-01 10 64136048 64136048 A G ZNF365 Silent p.G32G 0.16 TCGA-77-A5G1-01 10 75672060 75672060 G T PLAU Missense_Mutation p.G58V 0.13 tolerated(0.3) benign(0.029) TCGA-77-A5G1-01 10 96495241 96495241 G C CYP2C18 3'UTR 0.07 TCGA-77-A5G1-01 10 98064320 98064320 G A DNTT Silent p.L22L 0.12 TCGA-77-A5G1-01 11 101868480 101868481 - A KIAA1377 3'UTR 0.09 TCGA-77-A5G1-01 11 119182784 119182784 T G MCAM Missense_Mutation p.E374A 0.08 tolerated(0.42) benign(0.02) TCGA-77-A5G1-01 11 119182785 119182785 C T MCAM Missense_Mutation p.E374K 0.08 tolerated(0.3) benign(0.166) TCGA-77-A5G1-01 11 123813697 123813697 G T OR6T1 Silent p.P283P 0.09 TCGA-77-A5G1-01 11 1605603 1605603 G T KRTAP5-1 3'UTR 0.08 TCGA-77-A5G1-01 11 1605604 1605604 G T KRTAP5-1 3'UTR 0.08 TCGA-77-A5G1-01 11 22387228 22387228 C A SLC17A6 Missense_Mutation p.A295E 0.09 tolerated(0.2) benign(0.009) TCGA-77-A5G1-01 11 35232814 35232816 GAA - CD44 In_Frame_Del p.R545del 0.09 TCGA-77-A5G1-01 11 428154 428154 C T ANO9 Missense_Mutation p.R423H 0.08 deleterious(0) possibly_damaging(0.885) TCGA-77-A5G1-01 11 44165811 44165811 A T EXT2 Intron 0.14 TCGA-77-A5G1-01 11 4790790 4790790 T A OR51F1 Missense_Mutation p.T120S 0.11 deleterious(0) benign(0.001) TCGA-77-A5G1-01 11 48285478 48285478 G C OR4X1 Missense_Mutation p.Q22H 0.21 deleterious(0) probably_damaging(0.982) TCGA-77-A5G1-01 11 58979530 58979530 C T MPEG1 Missense_Mutation p.R270Q 0.13 tolerated(0.05) benign(0.319) TCGA-77-A5G1-01 11 92715291 92715291 G A MTNR1B Missense_Mutation p.S301N 0.14 deleterious(0) probably_damaging(0.999) TCGA-77-A5G1-01 12 102589780 102589780 A T PARPBP Missense_Mutation p.N484I 0.11 deleterious(0) possibly_damaging(0.8) TCGA-77-A5G1-01 12 130648819 130648819 C A FZD10 Silent p.I444I 0.15 TCGA-77-A5G1-01 12 131471801 131471801 A T GPR133 Nonsense_Mutation p.K218* 0.09 TCGA-77-A5G1-01 12 133225519 133225519 C A POLE Missense_Mutation p.R1382L 0.11 deleterious(0.01) benign(0.366) TCGA-77-A5G1-01 12 13716165 13716165 T C GRIN2B Missense_Mutation p.Y1336C 0.30 deleterious(0) probably_damaging(0.946) TCGA-77-A5G1-01 12 14924038 14924038 C A HIST4H4 5'UTR 0.31 TCGA-77-A5G1-01 12 44693510 44693510 T G TMEM117 Silent p.L252L 0.05 TCGA-77-A5G1-01 12 54338850 54338850 C G HOXC13 Missense_Mutation p.T268S 0.17 tolerated(0.15) benign(0.285) TCGA-77-A5G1-01 12 55820376 55820376 C A OR6C76 Silent p.A113A 0.05 TCGA-77-A5G1-01 12 57861941 57861941 C G GLI1 Silent p.P414P 0.12 TCGA-77-A5G1-01 13 110833723 110833723 T A COL4A1 Missense_Mutation p.L703F 0.15 benign(0.313) TCGA-77-A5G1-01 13 113158378 113158378 T C TUBGCP3 Missense_Mutation p.I759V 0.12 tolerated(0.2) benign(0.01) TCGA-77-A5G1-01 13 114107791 114107791 G A ADPRHL1 5'UTR 0.16 TCGA-77-A5G1-01 13 26787885 26787885 T A RNF6 3'UTR 0.19 TCGA-77-A5G1-01 13 36686217 36686217 C T DCLK1 Missense_Mutation p.G171E 0.13 tolerated(0.24) unknown(0) TCGA-77-A5G1-01 13 99948257 99948257 C G GPR183 Missense_Mutation p.G48A 0.09 deleterious(0.04) probably_damaging(1) TCGA-77-A5G1-01 14 20502236 20502236 G T OR4K13 Missense_Mutation p.R228S 0.11 tolerated(0.16) benign(0.319) TCGA-77-A5G1-01 14 39783946 39783946 G T CTAGE5 Missense_Mutation p.K438N 0.14 deleterious(0.02) possibly_damaging(0.481) TCGA-77-A5G1-01 14 74500759 74500759 A C CCDC176 Missense_Mutation p.E127A 0.33 deleterious(0.04) possibly_damaging(0.465) TCGA-77-A5G1-01 15 31200452 31200452 C T FAN1 Silent p.L456L 0.06 TCGA-77-A5G1-01 15 33858937 33858937 G A RYR3 Missense_Mutation p.R402H 0.13 benign(0) TCGA-77-A5G1-01 15 58256156 58256156 C G ALDH1A2 Missense_Mutation p.R338T 0.08 deleterious(0.04) benign(0.206) TCGA-77-A5G1-01 15 58285148 58285148 T A ALDH1A2 Nonsense_Mutation p.K227* 0.11 TCGA-77-A5G1-01 15 63032938 63032938 A G TLN2 Missense_Mutation p.N1332S 0.11 tolerated(0.15) benign(0.005) TCGA-77-A5G1-01 15 63928300 63928300 C T HERC1 Missense_Mutation p.G4092R 0.08 benign(0.43) TCGA-77-A5G1-01 15 65551560 65551560 T C PARP16 3'UTR 0.15 TCGA-77-A5G1-01 15 83215247 83215247 C A CPEB1 Missense_Mutation p.D507Y 0.16 deleterious(0.01) probably_damaging(0.99) TCGA-77-A5G1-01 15 91423416 91423416 G T FURIN Missense_Mutation p.R490L 0.10 deleterious(0) possibly_damaging(0.676) TCGA-77-A5G1-01 16 24566943 24566943 A G RBBP6 Missense_Mutation p.N119S 0.07 deleterious_low_confidence(0.02) probably_damaging(0.938) TCGA-77-A5G1-01 16 27476600 27476600 G T GTF3C1 Missense_Mutation p.T1779K 0.05 tolerated(0.14) benign(0.209) TCGA-77-A5G1-01 16 34739714 34739714 C G RP11-80F22.15 RNA 0.12 TCGA-77-A5G1-01 16 396669 396669 A G AXIN1 Silent p.F119F 0.11 TCGA-77-A5G1-01 16 66946236 66946236 A G CDH16 Missense_Mutation p.M486T 0.13 deleterious(0.01) possibly_damaging(0.828) TCGA-77-A5G1-01 16 68847351 68847351 G A CDH1 Missense_Mutation p.V425I 0.06 tolerated(1) benign(0.133) TCGA-77-A5G1-01 16 70889160 70889160 G T HYDIN Missense_Mutation p.T4105N 0.08 possibly_damaging(0.895) TCGA-77-A5G1-01 16 77401362 77401362 G T ADAMTS18 Missense_Mutation p.H252N 0.14 deleterious(0.01) probably_damaging(0.992) TCGA-77-A5G1-01 17 21825535 21825535 C A FAM27L RNA 0.09 TCGA-77-A5G1-01 17 27251099 27251099 A - PHF12 Frame_Shift_Del p.N181Kfs*15 0.22 TCGA-77-A5G1-01 17 29483049 29483049 G T NF1 Nonsense_Mutation p.E37* 0.10 TCGA-77-A5G1-01 17 36493036 36493036 C G GPR179 Missense_Mutation p.G351A 0.18 tolerated(0.06) benign(0.029) TCGA-77-A5G1-01 17 56283828 56283828 G A MKS1 Silent p.S496S 0.15 TCGA-77-A5G1-01 17 60493532 60493532 G A EFCAB3 Missense_Mutation p.E439K 0.15 deleterious(0) probably_damaging(0.999) TCGA-77-A5G1-01 17 64876674 64876674 A T CACNG5 Missense_Mutation p.K95M 0.13 deleterious(0) possibly_damaging(0.792) TCGA-77-A5G1-01 17 7578395 7578395 G T TP53 Missense_Mutation p.H179N 0.12 deleterious(0) probably_damaging(1) TCGA-77-A5G1-01 18 14542936 14542936 G A POTEC Silent p.P70P 0.11 TCGA-77-A5G1-01 18 47806316 47806316 T A MBD1 Missense_Mutation p.K16M 0.12 deleterious(0) probably_damaging(1) TCGA-77-A5G1-01 18 5434108 5434108 G A EPB41L3 Silent p.C206C 0.20 TCGA-77-A5G1-01 18 66344357 66344357 C A TMX3 Missense_Mutation p.C393F 0.11 deleterious(0.04) probably_damaging(0.999) TCGA-77-A5G1-01 18 6873735 6873735 G A ARHGAP28 Silent p.K232K 0.24 TCGA-77-A5G1-01 19 35556519 35556519 T C HPN Silent p.Y328Y 0.08 TCGA-77-A5G1-01 19 38946273 38946273 G T RYR1 Missense_Mutation p.G558V 0.11 probably_damaging(1) TCGA-77-A5G1-01 19 39914264 39914264 C T PLEKHG2 Missense_Mutation p.P857L 0.12 deleterious_low_confidence(0.03) possibly_damaging(0.77) TCGA-77-A5G1-01 19 41292804 41292804 C T RAB4B Missense_Mutation p.S193F 0.06 deleterious(0) benign(0.197) TCGA-77-A5G1-01 19 42566763 42566763 G T GRIK5 Missense_Mutation p.Q129K 0.11 tolerated(0.43) benign(0.065) TCGA-77-A5G1-01 19 44982139 44982139 C A ZNF180 Nonsense_Mutation p.E187* 0.30 TCGA-77-A5G1-01 19 49207136 49207136 A G FUT2 Missense_Mutation p.N308S 0.13 deleterious(0) probably_damaging(0.968) TCGA-77-A5G1-01 19 50322504 50322504 G A MED25 Missense_Mutation p.A86T 0.19 deleterious(0.03) probably_damaging(0.989) TCGA-77-A5G1-01 19 50549229 50549229 C T ZNF473 Missense_Mutation p.T510I 0.16 deleterious(0) benign(0.012) TCGA-77-A5G1-01 19 55964659 55964659 A C ISOC2 3'UTR 0.24 TCGA-77-A5G1-01 19 56701299 56701299 G C ZSCAN5B Missense_Mutation p.S462C 0.10 deleterious(0) probably_damaging(0.999) TCGA-77-A5G1-01 19 57641438 57641438 T A USP29 Silent p.L465L 0.04 TCGA-77-A5G1-01 19 58231641 58231641 A G ZNF671 3'UTR 0.29 TCGA-77-A5G1-01 19 9063463 9063463 A T MUC16 Missense_Mutation p.S7995T 0.12 unknown(0) TCGA-77-A5G1-01 19 9324602 9324602 G T OR7D4 Silent p.L304L 0.17 TCGA-77-A5G1-01 1 114445341 114445341 G A AP4B1 Missense_Mutation p.A86V 0.18 tolerated(0.4) possibly_damaging(0.823) TCGA-77-A5G1-01 1 115222314 115222314 G T AMPD1 Missense_Mutation p.H294Q 0.08 deleterious(0.04) probably_damaging(0.997) TCGA-77-A5G1-01 1 1334584 1334584 C A CCNL2 Missense_Mutation p.V35L 0.06 tolerated(0.37) benign(0.002) TCGA-77-A5G1-01 1 150960400 150960400 T A ANXA9 Missense_Mutation p.F222Y 0.16 deleterious(0.01) possibly_damaging(0.65) TCGA-77-A5G1-01 1 15541892 15541892 G C TMEM51 Silent p.P103P 0.12 TCGA-77-A5G1-01 1 164781296 164781296 A C PBX1 Missense_Mutation p.N303H 0.10 deleterious(0) probably_damaging(0.971) TCGA-77-A5G1-01 1 176734801 176734801 G A PAPPA2 Splice_Site p.X1384_splice 0.10 TCGA-77-A5G1-01 1 19029788 19029788 C A PAX7 Missense_Mutation p.Q385K 0.16 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-77-A5G1-01 1 197404306 197404306 A G CRB1 Missense_Mutation p.I1105V 0.09 tolerated(0.13) benign(0.032) TCGA-77-A5G1-01 1 203134940 203134940 C T ADORA1 Missense_Mutation p.T298I 0.05 deleterious(0) possibly_damaging(0.795) TCGA-77-A5G1-01 1 205028763 205028763 T A CNTN2 Nonsense_Mutation p.Y250* 0.09 TCGA-77-A5G1-01 1 205041247 205041247 C A CNTN2 Missense_Mutation p.T906K 0.07 tolerated(0.29) benign(0.366) TCGA-77-A5G1-01 1 29030800 29030800 G T GMEB1 Missense_Mutation p.G286V 0.11 deleterious(0.04) probably_damaging(0.972) TCGA-77-A5G1-01 1 35320904 35320904 T A SMIM12 3'UTR 0.10 TCGA-77-A5G1-01 1 36208794 36208794 C G CLSPN Missense_Mutation p.D1031H 0.14 deleterious(0.04) probably_damaging(0.973) TCGA-77-A5G1-01 1 36290943 36290943 G C AGO4 Missense_Mutation p.E112D 0.12 tolerated(0.41) benign(0.071) TCGA-77-A5G1-01 1 76190365 76190365 C G ACADM 5'Flank 0.17 TCGA-77-A5G1-01 1 84609978 84609978 G C PRKACB 5'UTR 0.11 TCGA-77-A5G1-01 20 25470516 25470516 C A NINL Missense_Mutation p.D531Y 0.12 deleterious(0) probably_damaging(0.971) TCGA-77-A5G1-01 20 30662498 30662498 C A HCK Silent p.A134A 0.13 TCGA-77-A5G1-01 20 43926608 43926608 A T MATN4 Missense_Mutation p.F510Y 0.07 probably_damaging(0.999) TCGA-77-A5G1-01 20 61288286 61288286 C T SLCO4A1 Silent p.V160V 0.17 TCGA-77-A5G1-01 21 36231786 36231786 G A RUNX1 Missense_Mutation p.P200S 0.07 deleterious(0) probably_damaging(0.988) TCGA-77-A5G1-01 21 43912945 43912945 C G RSPH1 Missense_Mutation p.R66P 0.05 deleterious(0) probably_damaging(0.996) TCGA-77-A5G1-01 21 46020828 46020828 G T KRTAP10-7 Missense_Mutation p.A103S 0.04 tolerated(0.71) unknown(0) TCGA-77-A5G1-01 22 32230010 32230010 G A DEPDC5 Intron 0.22 TCGA-77-A5G1-01 22 51013024 51013024 A G CPT1B Silent p.L261L 0.13 TCGA-77-A5G1-01 2 141945987 141945987 T G LRP1B Intron 0.18 TCGA-77-A5G1-01 2 178415547 178415547 C T TTC30B Missense_Mutation p.E649K 0.06 deleterious(0) probably_damaging(0.957) TCGA-77-A5G1-01 2 179412344 179412344 C A TTN Nonsense_Mutation p.G31337* 0.13 TCGA-77-A5G1-01 2 179583105 179583105 C G TTN Missense_Mutation p.C8243S 0.08 TCGA-77-A5G1-01 2 179733849 179733849 C A CCDC141 Nonsense_Mutation p.E797* 0.07 TCGA-77-A5G1-01 2 179733850 179733850 C A CCDC141 Missense_Mutation p.K796N 0.08 deleterious(0.03) probably_damaging(0.945) TCGA-77-A5G1-01 2 182542930 182542930 A G NEUROD1 Missense_Mutation p.S220P 0.09 tolerated(0.62) benign(0) TCGA-77-A5G1-01 2 182543090 182543090 G A NEUROD1 Silent p.V166V 0.15 TCGA-77-A5G1-01 2 1893083 1893083 C A MYT1L Missense_Mutation p.W815L 0.09 deleterious(0) probably_damaging(0.962) TCGA-77-A5G1-01 2 190541323 190541323 A T ANKAR Missense_Mutation p.E36V 0.11 deleterious(0) possibly_damaging(0.569) TCGA-77-A5G1-01 2 190742064 190742064 A G PMS1 Missense_Mutation p.I901V 0.16 tolerated(0.21) benign(0.011) TCGA-77-A5G1-01 2 202712136 202712136 A G CDK15 Missense_Mutation p.Q295R 0.12 tolerated(0.13) benign(0.164) TCGA-77-A5G1-01 2 210559325 210559325 G T MAP2 Missense_Mutation p.D811Y 0.15 deleterious(0) probably_damaging(1) TCGA-77-A5G1-01 2 220414437 220414437 A T TMEM198 Splice_Site p.X316_splice 0.14 TCGA-77-A5G1-01 2 220440114 220440114 G A INHA Missense_Mutation p.G323R 0.13 deleterious(0) probably_damaging(0.999) TCGA-77-A5G1-01 2 24526684 24526684 G A ITSN2 Nonsense_Mutation p.Q281* 0.10 TCGA-77-A5G1-01 2 25966302 25966302 C A ASXL2 Silent p.L968L 0.12 TCGA-77-A5G1-01 2 26672882 26672882 A C DRC1 Missense_Mutation p.K510Q 0.11 deleterious(0) possibly_damaging(0.452) TCGA-77-A5G1-01 2 26683768 26683768 G A OTOF Silent p.G1888G 0.12 TCGA-77-A5G1-01 2 28533018 28533018 T C BRE Intron 0.17 TCGA-77-A5G1-01 2 50464009 50464009 C A NRXN1 Missense_Mutation p.G1195V 0.21 deleterious(0) probably_damaging(0.999) TCGA-77-A5G1-01 2 54826367 54826367 C T SPTBN1 Missense_Mutation p.S96F 0.09 deleterious(0) probably_damaging(1) TCGA-77-A5G1-01 2 80529791 80529791 C A LRRTM1 Missense_Mutation p.G385V 0.08 tolerated(0.56) benign(0.002) TCGA-77-A5G1-01 2 80529792 80529792 C A LRRTM1 Missense_Mutation p.G385W 0.08 tolerated(0.19) benign(0.161) TCGA-77-A5G1-01 2 84518169 84518169 G T FUNDC2P2 RNA 0.18 TCGA-77-A5G1-01 2 85838905 85838905 C T C2orf68 Missense_Mutation p.D38N 0.10 tolerated(0.23) benign(0.025) TCGA-77-A5G1-01 2 86678232 86678232 A G KDM3A Missense_Mutation p.K117E 0.20 deleterious(0.03) benign(0.137) TCGA-77-A5G1-01 2 90198911 90198911 C A IGKV1D-12 Silent p.I24I 0.11 TCGA-77-A5G1-01 2 90198912 90198912 C A IGKV1D-12 Missense_Mutation p.Q25K 0.12 tolerated(0.19) benign(0.062) TCGA-77-A5G1-01 3 130649365 130649365 C A ATP2C1 Missense_Mutation p.L72I 0.30 deleterious(0.02) probably_damaging(0.923) TCGA-77-A5G1-01 3 157815754 157815754 G A SHOX2 3'UTR 0.09 TCGA-77-A5G1-01 3 170784449 170784449 C A TNIK Nonsense_Mutation p.E1259* 0.22 TCGA-77-A5G1-01 3 186335108 186335108 A C AHSG Missense_Mutation p.Q181P 0.09 deleterious(0.01) possibly_damaging(0.863) TCGA-77-A5G1-01 3 196434758 196434758 T C CEP19 Silent p.L56L 0.05 TCGA-77-A5G1-01 3 52823740 52823740 G A ITIH1 Missense_Mutation p.G731R 0.12 deleterious(0.02) probably_damaging(1) TCGA-77-A5G1-01 3 53326789 53326789 T C DCP1A Silent p.Q231Q 0.12 TCGA-77-A5G1-01 3 53854606 53854606 C A CHDH Nonsense_Mutation p.E339* 0.12 TCGA-77-A5G1-01 4 104037769 104037769 T A CENPE Silent p.L2469L 0.15 TCGA-77-A5G1-01 4 110434947 110434947 G A SEC24B Missense_Mutation p.E650K 0.06 deleterious(0.02) probably_damaging(0.99) TCGA-77-A5G1-01 4 160259563 160259563 A G RAPGEF2 Missense_Mutation p.S585G 0.05 deleterious(0) possibly_damaging(0.598) TCGA-77-A5G1-01 4 16504601 16504601 G C LDB2 Intron 0.15 TCGA-77-A5G1-01 4 178882061 178882061 T A LINC01098 Splice_Site p.X19_splice 0.08 TCGA-77-A5G1-01 4 26487287 26487287 G C CCKAR Missense_Mutation p.L200V 0.05 deleterious(0) benign(0.232) TCGA-77-A5G1-01 4 40440553 40440553 G C RBM47 Missense_Mutation p.H120D 0.08 tolerated(0.31) benign(0.036) TCGA-77-A5G1-01 4 42065020 42065020 T A SLC30A9 Missense_Mutation p.M305K 0.08 deleterious(0) benign(0.374) TCGA-77-A5G1-01 4 55960972 55960972 C A KDR Nonsense_Mutation p.E990* 0.17 TCGA-77-A5G1-01 5 140176725 140176725 C T PCDHA2 Missense_Mutation p.P726S 0.21 tolerated_low_confidence(0.11) benign(0.052) TCGA-77-A5G1-01 5 140604818 140604818 G C PCDHB14 Missense_Mutation p.E581Q 0.14 deleterious_low_confidence(0.04) benign(0.283) TCGA-77-A5G1-01 5 21751764 21751764 A T CDH12 3'UTR 0.26 TCGA-77-A5G1-01 5 61653543 61653543 G T KIF2A Missense_Mutation p.C227F 0.12 deleterious(0) probably_damaging(1) TCGA-77-A5G1-01 5 63802557 63802557 A G RGS7BP Missense_Mutation p.R36G 0.21 deleterious_low_confidence(0) benign(0.291) TCGA-77-A5G1-01 5 82876205 82876205 C A VCAN Silent p.S3381S 0.21 TCGA-77-A5G1-01 5 86659245 86659245 C T RASA1 Nonsense_Mutation p.R512* 0.16 TCGA-77-A5G1-01 6 12122203 12122203 G T HIVEP1 Silent p.G725G 0.07 TCGA-77-A5G1-01 6 129634090 129634090 G A LAMA2 Missense_Mutation p.G1087S 0.07 deleterious(0.01) probably_damaging(1) TCGA-77-A5G1-01 6 152647525 152647525 C A SYNE1 Missense_Mutation p.G5067C 0.16 possibly_damaging(0.881) TCGA-77-A5G1-01 6 157505436 157505436 C G ARID1B Missense_Mutation p.S1139R 0.08 probably_damaging(0.998) TCGA-77-A5G1-01 6 165713939 165713939 A G C6orf118 Missense_Mutation p.F264L 0.07 tolerated(0.35) benign(0.047) TCGA-77-A5G1-01 6 29429414 29429414 T A OR2H1 5'UTR 0.30 TCGA-77-A5G1-01 6 30128677 30128677 G C TRIM10 5'UTR 0.29 TCGA-77-A5G1-01 6 32163533 32163533 C G NOTCH4 Missense_Mutation p.R1898P 0.18 tolerated_low_confidence(0.16) benign(0.003) TCGA-77-A5G1-01 6 3224951 3224951 C A TUBB2B 3'UTR 0.11 TCGA-77-A5G1-01 6 46977980 46977980 T A GPR110 Missense_Mutation p.E397D 0.10 tolerated(0.12) benign(0.015) TCGA-77-A5G1-01 6 51927398 51927398 G A PKHD1 Missense_Mutation p.A346V 0.15 deleterious(0.02) possibly_damaging(0.517) TCGA-77-A5G1-01 6 54066989 54066989 C T MLIP Silent p.F357F 0.08 TCGA-77-A5G1-01 6 55223882 55223882 G - GFRAL Frame_Shift_Del p.E300Rfs*42 0.17 TCGA-77-A5G1-01 6 69348667 69348667 G T BAI3 Missense_Mutation p.V34L 0.07 deleterious(0.03) possibly_damaging(0.846) TCGA-77-A5G1-01 6 80723014 80723014 A G TTK Silent p.E305E 0.12 TCGA-77-A5G1-01 7 100280061 100280061 G T GIGYF1 Missense_Mutation p.T882K 0.08 tolerated(0.12) probably_damaging(0.987) TCGA-77-A5G1-01 7 100364640 100364640 C A ZAN Silent p.A1540A 0.13 TCGA-77-A5G1-01 7 113519454 113519454 G T PPP1R3A Missense_Mutation p.L565M 0.12 deleterious(0.05) benign(0.071) TCGA-77-A5G1-01 7 11445956 11445956 A G THSD7A Missense_Mutation p.L1403P 0.05 deleterious(0) probably_damaging(0.961) TCGA-77-A5G1-01 7 128496609 128496609 C A FLNC Missense_Mutation p.A2430D 0.12 tolerated(0.43) probably_damaging(0.93) TCGA-77-A5G1-01 7 129122851 129122851 C G STRIP2 Missense_Mutation p.R740G 0.17 deleterious(0) probably_damaging(0.988) TCGA-77-A5G1-01 7 142723687 142723687 C A OR9A2 Missense_Mutation p.G178V 0.09 deleterious(0.01) probably_damaging(1) TCGA-77-A5G1-01 7 1607197 1607197 G C PSMG3 3'UTR 0.14 TCGA-77-A5G1-01 7 21856263 21856263 A T DNAH11 Missense_Mutation p.K3511M 0.09 probably_damaging(0.999) TCGA-77-A5G1-01 7 35242324 35242324 G A TBX20 Silent p.S354S 0.24 TCGA-77-A5G1-01 7 81336627 81336627 G T HGF Missense_Mutation p.A532E 0.14 tolerated(0.15) probably_damaging(0.972) TCGA-77-A5G1-01 7 82785070 82785070 G A PCLO Missense_Mutation p.P296L 0.20 unknown(0) TCGA-77-A5G1-01 7 87563847 87563847 G T ADAM22 Missense_Mutation p.A23S 0.14 tolerated_low_confidence(0.18) benign(0.002) TCGA-77-A5G1-01 7 98984309 98984309 G C ARPC1B Missense_Mutation p.Q22H 0.08 deleterious(0.02) possibly_damaging(0.768) TCGA-77-A5G1-01 8 99440544 99440544 T G KCNS2 Missense_Mutation p.F113V 0.11 tolerated(0.12) benign(0.098) TCGA-77-A5G1-01 9 100087300 100087300 G T CCDC180 Splice_Site p.X502_splice 0.11 TCGA-77-A5G1-01 9 14770739 14770739 G A FREM1 Silent p.L1641L 0.17 TCGA-77-A5G1-01 9 2058311 2058311 G - SMARCA2 Frame_Shift_Del p.L456Ffs*51 0.11 TCGA-77-A5G1-01 9 37746385 37746385 C G FRMPD1 Silent p.T1452T 0.12 TCGA-77-A5G1-01 9 43816684 43816684 G T CNTNAP3B Missense_Mutation p.G264C 0.27 deleterious(0) probably_damaging(1) TCGA-77-A5G1-01 X 102332583 102332583 A G NXF3 Missense_Mutation p.S515P 0.14 deleterious(0.02) probably_damaging(0.961) TCGA-77-A5G1-01 X 104999281 104999281 C A IL1RAPL2 Missense_Mutation p.L435M 0.31 deleterious(0) probably_damaging(1) TCGA-77-A5G1-01 X 105277432 105277432 T C SERPINA7 3'UTR 0.32 TCGA-77-A5G1-01 X 49846463 49846463 T A CLCN5 Missense_Mutation p.C298S 0.23 deleterious(0) benign(0.262) TCGA-77-A5G1-01 X 77528585 77528585 G A CYSLTR1 Missense_Mutation p.S220L 0.25 deleterious(0.05) benign(0.297) TCGA-77-A5G3-01 10 103988973 103988973 C A ELOVL3 Silent p.I259I 0.15 TCGA-77-A5G3-01 10 108389078 108389078 G A SORCS1 Silent p.L848L 0.39 TCGA-77-A5G3-01 10 112838132 112838132 G T ADRA2A Silent p.A126A 0.39 TCGA-77-A5G3-01 10 11356135 11356135 C A CELF2 Missense_Mutation p.A337E 0.19 tolerated(0.19) benign(0.269) TCGA-77-A5G3-01 10 124378837 124378837 G T DMBT1 Missense_Mutation p.Q1614H 0.24 tolerated(0.18) possibly_damaging(0.827) TCGA-77-A5G3-01 10 134018428 134018428 C G DPYSL4 Silent p.L571L 0.26 TCGA-77-A5G3-01 10 15614303 15614303 G T ITGA8 Silent p.A848A 0.06 TCGA-77-A5G3-01 10 16562672 16562672 G T C1QL3 Silent p.A131A 0.22 TCGA-77-A5G3-01 10 17113938 17113938 G T CUBN Silent p.V778V 0.29 TCGA-77-A5G3-01 10 17756558 17756558 G A STAM Missense_Mutation p.V468I 0.13 tolerated(0.25) benign(0.063) TCGA-77-A5G3-01 10 23270594 23270594 G - ARMC3 Frame_Shift_Del p.A381Qfs*3 0.20 TCGA-77-A5G3-01 10 38121106 38121106 A T ZNF248 Missense_Mutation p.S393T 0.10 deleterious(0.03) probably_damaging(0.989) TCGA-77-A5G3-01 10 45652379 45652379 C A RP11-445N18.7 RNA 0.25 TCGA-77-A5G3-01 10 48390847 48390847 C A RBP3 Missense_Mutation p.V11L 0.10 tolerated(1) benign(0.167) TCGA-77-A5G3-01 10 50599256 50599256 A G DRGX Missense_Mutation p.L34P 0.14 tolerated(0.08) benign(0.05) TCGA-77-A5G3-01 10 50872840 50872840 G A CHAT Silent p.E665E 0.22 TCGA-77-A5G3-01 10 52588042 52588042 T A A1CF Missense_Mutation p.L214F 0.18 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 10 52601693 52601693 A C A1CF Nonsense_Mutation p.Y106* 0.19 TCGA-77-A5G3-01 10 53921674 53921674 C T PRKG1 Silent p.L343L 0.33 TCGA-77-A5G3-01 10 86131985 86131985 G A CCSER2 Missense_Mutation p.D393N 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-77-A5G3-01 10 87373274 87373274 A G GRID1 Missense_Mutation p.F831L 0.15 deleterious(0.03) probably_damaging(0.996) TCGA-77-A5G3-01 10 88696406 88696406 C - MMRN2 3'UTR 0.20 TCGA-77-A5G3-01 10 90665307 90665307 C T STAMBPL1 Silent p.I46I 0.17 TCGA-77-A5G3-01 10 98715374 98715374 G C LCOR Missense_Mutation p.D333H 0.12 deleterious(0) probably_damaging(0.953) TCGA-77-A5G3-01 10 99160858 99160858 C A RRP12 Missense_Mutation p.R44L 0.42 tolerated(0.05) benign(0.02) TCGA-77-A5G3-01 10 99498365 99498365 A T ZFYVE27 Missense_Mutation p.Y44F 0.36 tolerated(0.19) possibly_damaging(0.68) TCGA-77-A5G3-01 11 108348373 108348373 C A KDELC2 Missense_Mutation p.Q453H 0.27 tolerated(0.13) probably_damaging(0.992) TCGA-77-A5G3-01 11 118772225 118772225 C A BCL9L Missense_Mutation p.G743C 0.17 possibly_damaging(0.781) TCGA-77-A5G3-01 11 124761617 124761617 G T ROBO4 Missense_Mutation p.S543R 0.30 deleterious(0) probably_damaging(0.997) TCGA-77-A5G3-01 11 126294481 126294481 G A KIRREL3 Silent p.H777H 0.26 TCGA-77-A5G3-01 11 1271028 1271028 C A MUC5B Silent p.T4306T 0.05 TCGA-77-A5G3-01 11 14990301 14990301 T C CALCA 3'UTR 0.24 TCGA-77-A5G3-01 11 18266992 18266992 T A SAA2 Missense_Mutation p.N101Y 0.19 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 11 18955479 18955479 G A MRGPRX1 Nonsense_Mutation p.Q285* 0.05 TCGA-77-A5G3-01 11 19077732 19077732 C A MRGPRX2 Missense_Mutation p.G73V 0.05 tolerated(0.12) benign(0.05) TCGA-77-A5G3-01 11 26484610 26484610 C T ANO3 Missense_Mutation p.S116L 0.36 tolerated(0.14) benign(0.005) TCGA-77-A5G3-01 11 30942357 30942357 G T DCDC1 Missense_Mutation p.P1087T 0.19 tolerated(0.46) benign(0) TCGA-77-A5G3-01 11 31669325 31669325 G A ELP4 Missense_Mutation p.D322N 0.09 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 11 36596844 36596844 G A RAG1 Missense_Mutation p.D664N 0.20 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-77-A5G3-01 11 36597615 36597615 G C RAG1 Missense_Mutation p.E921Q 0.20 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-77-A5G3-01 11 36597652 36597652 G A RAG1 Missense_Mutation p.G933E 0.23 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-77-A5G3-01 11 4661386 4661386 C T OR51D1 Silent p.A122A 0.08 TCGA-77-A5G3-01 11 4703721 4703721 G C OR51E2 Missense_Mutation p.T74R 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-77-A5G3-01 11 48510616 48510616 C T OR4A47 Missense_Mutation p.S91F 0.17 deleterious_low_confidence(0.01) probably_damaging(0.95) TCGA-77-A5G3-01 11 4976389 4976389 A T OR51A2 Missense_Mutation p.D185E 0.40 tolerated(0.25) probably_damaging(0.967) TCGA-77-A5G3-01 11 5443650 5443650 G T OR51Q1 Missense_Mutation p.G74C 0.16 tolerated(0.09) probably_damaging(1) TCGA-77-A5G3-01 11 5475228 5475228 A G OR51I2 Silent p.R170R 0.14 TCGA-77-A5G3-01 11 5510746 5510746 C G OR52D1 Missense_Mutation p.H270Q 0.13 tolerated(0.08) possibly_damaging(0.454) TCGA-77-A5G3-01 11 5530642 5530642 C A UBQLN3 Missense_Mutation p.E49D 0.11 tolerated(0.09) possibly_damaging(0.715) TCGA-77-A5G3-01 11 55587449 55587449 T C OR5D18 Missense_Mutation p.L115S 0.20 deleterious(0) benign(0.265) TCGA-77-A5G3-01 11 55606281 55606281 C T OR5D16 Silent p.G18G 0.15 TCGA-77-A5G3-01 11 55798691 55798691 A T OR5AS1 Missense_Mutation p.Y266F 0.37 deleterious(0.02) probably_damaging(0.926) TCGA-77-A5G3-01 11 56043625 56043625 C A OR5T1 Missense_Mutation p.H171N 0.15 deleterious(0.02) possibly_damaging(0.566) TCGA-77-A5G3-01 11 5717622 5717622 A G TRIM22 Missense_Mutation p.S54G 0.14 tolerated(0.11) benign(0.033) TCGA-77-A5G3-01 11 57367596 57367596 C A SERPING1 Missense_Mutation p.T99N 0.21 tolerated(0.35) benign(0.403) TCGA-77-A5G3-01 11 57367597 57367597 C A SERPING1 Silent p.T99T 0.22 TCGA-77-A5G3-01 11 5757977 5757977 G T OR56B1 Missense_Mutation p.M77I 0.17 tolerated(0.31) benign(0) TCGA-77-A5G3-01 11 5758583 5758583 G T OR56B1 Missense_Mutation p.L279F 0.09 tolerated(0.72) benign(0.35) TCGA-77-A5G3-01 11 58711032 58711032 G T GLYATL1 Missense_Mutation p.G14V 0.29 tolerated_low_confidence(0.08) benign(0.041) TCGA-77-A5G3-01 11 58893645 58893645 G A FAM111B Missense_Mutation p.C692Y 0.13 tolerated(0.58) benign(0.029) TCGA-77-A5G3-01 11 59245266 59245266 C A OR4D10 Silent p.R122R 0.25 TCGA-77-A5G3-01 11 59282706 59282706 G A OR4D9 Silent p.L107L 0.09 TCGA-77-A5G3-01 11 60197066 60197066 C A MS4A5 5'UTR 0.29 TCGA-77-A5G3-01 11 61916287 61916287 G A INCENP Missense_Mutation p.S787N 0.07 tolerated(0.15) benign(0.164) TCGA-77-A5G3-01 11 6221336 6221336 C A OR52W1 Missense_Mutation p.P295T 0.30 deleterious(0) benign(0.389) TCGA-77-A5G3-01 11 6261463 6261463 G A CNGA4 Missense_Mutation p.A147T 0.17 tolerated(0.17) benign(0.002) TCGA-77-A5G3-01 11 63978850 63978850 C G FERMT3 Missense_Mutation p.D206E 0.24 tolerated(0.15) benign(0.057) TCGA-77-A5G3-01 11 64024014 64024014 G T PLCB3 Missense_Mutation p.D289Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-77-A5G3-01 11 65487227 65487227 G A RNASEH2C 3'UTR 0.21 TCGA-77-A5G3-01 11 6653002 6653002 G - DCHS1 Frame_Shift_Del p.Q1174Rfs*63 0.14 TCGA-77-A5G3-01 11 66619351 66619351 C T PC Missense_Mutation p.R631Q 0.21 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 11 70263125 70263125 C T CTTN Missense_Mutation p.S155F 0.34 deleterious(0.02) probably_damaging(0.998) TCGA-77-A5G3-01 11 73071458 73071458 A G ARHGEF17 Missense_Mutation p.T1434A 0.12 deleterious(0.05) probably_damaging(0.912) TCGA-77-A5G3-01 11 76170993 76170993 C G C11orf30 Silent p.S145S 0.08 TCGA-77-A5G3-01 11 7981534 7981534 G T NLRP10 Missense_Mutation p.A542E 0.10 tolerated(0.27) benign(0.057) TCGA-77-A5G3-01 11 8161705 8161705 G A RIC3 Missense_Mutation p.H54Y 0.17 tolerated(0.06) possibly_damaging(0.697) TCGA-77-A5G3-01 11 900078 900078 C A CHID1 Missense_Mutation p.D183Y 0.06 deleterious(0.01) benign(0.371) TCGA-77-A5G3-01 11 9042624 9042624 T C SCUBE2 Missense_Mutation p.K962E 0.14 deleterious(0) probably_damaging(0.998) TCGA-77-A5G3-01 11 9087435 9087435 T A SCUBE2 Intron 0.08 TCGA-77-A5G3-01 12 100599472 100599472 G C ACTR6 Missense_Mutation p.D69H 0.21 deleterious(0.02) possibly_damaging(0.458) TCGA-77-A5G3-01 12 101018030 101018030 G C GAS2L3 Missense_Mutation p.D483H 0.11 tolerated(0.27) benign(0.003) TCGA-77-A5G3-01 12 104122702 104122702 C T STAB2 Silent p.L1671L 0.18 TCGA-77-A5G3-01 12 106895142 106895142 A G POLR3B Missense_Mutation p.Y1009C 0.19 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 12 108168932 108168932 C G ASCL4 5'UTR 0.12 TCGA-77-A5G3-01 12 11034928 11034928 T G PRH1 Missense_Mutation p.Q136P 0.13 tolerated_low_confidence(0.11) unknown(0) TCGA-77-A5G3-01 12 11083395 11083395 C T PRH2 Nonsense_Mutation p.Q79* 0.10 TCGA-77-A5G3-01 12 118599715 118599715 C A TAOK3 Missense_Mutation p.D673Y 0.17 deleterious(0) possibly_damaging(0.781) TCGA-77-A5G3-01 12 122295252 122295252 A T HPD Missense_Mutation p.H60Q 0.19 deleterious(0.04) possibly_damaging(0.649) TCGA-77-A5G3-01 12 124209276 124209276 G T ATP6V0A2 Nonsense_Mutation p.E124* 0.17 TCGA-77-A5G3-01 12 126138387 126138387 G C TMEM132B Missense_Mutation p.E790Q 0.25 tolerated(0.37) benign(0.029) TCGA-77-A5G3-01 12 1291095 1291095 G T ERC1 Missense_Mutation p.R627L 0.20 deleterious(0) possibly_damaging(0.634) TCGA-77-A5G3-01 12 14650641 14650641 G T ATF7IP Missense_Mutation p.Q1149H 0.10 tolerated_low_confidence(0.11) unknown(0) TCGA-77-A5G3-01 12 22063862 22063862 T C ABCC9 Silent p.L354L 0.19 TCGA-77-A5G3-01 12 22078939 22078939 T A ABCC9 Missense_Mutation p.T115S 0.15 deleterious(0.02) benign(0.016) TCGA-77-A5G3-01 12 39087566 39087566 C A CPNE8 Missense_Mutation p.A346S 0.22 tolerated(0.38) possibly_damaging(0.801) TCGA-77-A5G3-01 12 4721726 4721726 G T DYRK4 Missense_Mutation p.R388L 0.25 deleterious(0) probably_damaging(0.999) TCGA-77-A5G3-01 12 48888609 48888610 - C C12orf54 Frame_Shift_Ins p.L94Vfs*63 0.11 TCGA-77-A5G3-01 12 49361781 49361781 G A WNT10B Missense_Mutation p.P220L 0.07 tolerated(0.57) probably_damaging(0.999) TCGA-77-A5G3-01 12 49434115 49434115 T A KMT2D Nonsense_Mutation p.K2480* 0.17 TCGA-77-A5G3-01 12 49491438 49491438 C A LMBR1L 3'UTR 0.19 TCGA-77-A5G3-01 12 51065074 51065074 C G DIP2B Nonsense_Mutation p.S178* 0.08 TCGA-77-A5G3-01 12 53227646 53227646 G T KRT79 Silent p.P133P 0.20 TCGA-77-A5G3-01 12 53926958 53926958 G C ATF7 Missense_Mutation p.P216A 0.24 tolerated(0.06) possibly_damaging(0.824) TCGA-77-A5G3-01 12 54059204 54059204 G A ATP5G2 Missense_Mutation p.S164F 0.27 deleterious(0.01) possibly_damaging(0.693) TCGA-77-A5G3-01 12 55945350 55945350 G A OR6C4 Missense_Mutation p.A114T 0.18 tolerated_low_confidence(0.21) probably_damaging(0.989) TCGA-77-A5G3-01 12 56822828 56822828 G A TIMELESS Silent p.A381A 0.16 TCGA-77-A5G3-01 12 57009341 57009341 T C BAZ2A Missense_Mutation p.T65A 0.17 deleterious(0.02) probably_damaging(0.98) TCGA-77-A5G3-01 12 63994138 63994138 C A DPY19L2 Missense_Mutation p.G436V 0.14 deleterious(0.01) possibly_damaging(0.823) TCGA-77-A5G3-01 12 6777243 6777243 C T ZNF384 Silent p.P457P 0.13 TCGA-77-A5G3-01 12 7586271 7586271 C G CD163L1 Missense_Mutation p.L48F 0.19 deleterious(0.01) probably_damaging(0.986) TCGA-77-A5G3-01 12 80199402 80199402 G A PPP1R12A Missense_Mutation p.S657F 0.20 tolerated(0.1) possibly_damaging(0.804) TCGA-77-A5G3-01 12 8048268 8048268 G C NANOGP1 RNA 0.08 TCGA-77-A5G3-01 12 81102392 81102392 A T MYF6 Missense_Mutation p.E203D 0.34 tolerated(0.59) benign(0.003) TCGA-77-A5G3-01 12 81111009 81111009 G A MYF5 Missense_Mutation p.R56Q 0.16 deleterious(0.01) probably_damaging(0.993) TCGA-77-A5G3-01 12 81675087 81675087 A C PPFIA2 Missense_Mutation p.L1054R 0.23 deleterious(0) probably_damaging(0.998) TCGA-77-A5G3-01 12 81675089 81675089 G T PPFIA2 Missense_Mutation p.H1053Q 0.26 deleterious(0) probably_damaging(0.992) TCGA-77-A5G3-01 12 81762605 81762605 G T PPFIA2 Missense_Mutation p.H461N 0.20 deleterious(0) probably_damaging(0.999) TCGA-77-A5G3-01 12 88482926 88482926 C T CEP290 Missense_Mutation p.M1304I 0.17 benign(0.006) TCGA-77-A5G3-01 12 9908956 9908956 G T CD69 Missense_Mutation p.L42M 0.21 deleterious(0.03) possibly_damaging(0.535) TCGA-77-A5G3-01 13 108518153 108518153 G A FAM155A Silent p.C264C 0.05 TCGA-77-A5G3-01 13 111111138 111111138 T C COL4A2 Missense_Mutation p.C485R 0.36 probably_damaging(0.995) TCGA-77-A5G3-01 13 20399172 20399172 A T ZMYM5 Missense_Mutation p.N485K 0.62 tolerated_low_confidence(0.08) benign(0.058) TCGA-77-A5G3-01 13 21715072 21715072 C A SAP18 Missense_Mutation p.H59Q 0.06 deleterious(0) possibly_damaging(0.717) TCGA-77-A5G3-01 13 25017869 25017869 C T PARP4 Splice_Site p.X1123_splice 0.12 TCGA-77-A5G3-01 13 25744328 25744328 C G AMER2 Missense_Mutation p.R477T 0.33 deleterious(0.04) probably_damaging(0.978) TCGA-77-A5G3-01 13 26788089 26788089 T A RNF6 Nonsense_Mutation p.K644* 0.16 TCGA-77-A5G3-01 13 31835192 31835192 G - B3GALTL Frame_Shift_Del p.A191Pfs*2 0.37 TCGA-77-A5G3-01 13 35644208 35644208 T - NBEA Frame_Shift_Del p.F469Lfs*8 0.30 TCGA-77-A5G3-01 13 35770189 35770189 A T NBEA Missense_Mutation p.T1706S 0.25 tolerated_low_confidence(0.08) benign(0.057) TCGA-77-A5G3-01 13 41345282 41345282 A C MRPS31 5'UTR 0.35 TCGA-77-A5G3-01 13 42875230 42875230 C T AKAP11 Missense_Mutation p.P783L 0.36 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 13 50141440 50141440 T C RCBTB1 5'UTR 0.12 TCGA-77-A5G3-01 13 70456576 70456576 C A KLHL1 Nonsense_Mutation p.E356* 0.56 TCGA-77-A5G3-01 13 70681892 70681892 G T KLHL1 5'UTR 0.67 TCGA-77-A5G3-01 13 77657273 77657273 C T MYCBP2 Missense_Mutation p.E3606K 0.10 probably_damaging(0.965) TCGA-77-A5G3-01 13 92101090 92101090 C T GPC5 Missense_Mutation p.A80V 0.16 tolerated(0.15) benign(0.163) TCGA-77-A5G3-01 13 99098405 99098405 G A FARP1 Silent p.Q950Q 0.11 TCGA-77-A5G3-01 14 105353505 105353505 C A CEP170B Missense_Mutation p.Q977K 0.17 tolerated(0.66) benign(0.011) TCGA-77-A5G3-01 14 106725654 106725654 T G IGHV3-23 Translation_Start_Site p.M1? 0.15 deleterious_low_confidence(0.01) benign(0.118) TCGA-77-A5G3-01 14 20585705 20585705 G T OR4K17 Missense_Mutation p.G47V 0.14 deleterious(0) probably_damaging(0.995) TCGA-77-A5G3-01 14 22133750 22133750 G T OR4E2 Missense_Mutation p.G152C 0.19 deleterious(0) probably_damaging(0.988) TCGA-77-A5G3-01 14 22192501 22192501 C A TRAV3 Silent p.S92S 0.18 TCGA-77-A5G3-01 14 23896479 23896479 C A MYH7 Silent p.S642S 0.14 TCGA-77-A5G3-01 14 24568405 24568405 G T PCK2 Missense_Mutation p.R271L 0.10 tolerated(0.61) possibly_damaging(0.621) TCGA-77-A5G3-01 14 24799454 24799454 A T ADCY4 Nonsense_Mutation p.C326* 0.22 TCGA-77-A5G3-01 14 31828190 31828190 T G HEATR5A Silent p.T422T 0.10 TCGA-77-A5G3-01 14 32328330 32328330 G A NUBPL Missense_Mutation p.A302T 0.17 tolerated(0.16) benign(0.08) TCGA-77-A5G3-01 14 44975592 44975592 G T FSCB Missense_Mutation p.P200Q 0.08 deleterious(0) probably_damaging(0.996) TCGA-77-A5G3-01 14 51707023 51707023 G T TMX1 Missense_Mutation p.G5W 0.10 tolerated_low_confidence(0.06) unknown(0) TCGA-77-A5G3-01 14 60212481 60212481 G A RTN1 Silent p.V320V 0.19 TCGA-77-A5G3-01 14 64727431 64727431 G T ESR2 Silent p.R230R 0.25 TCGA-77-A5G3-01 14 67849282 67849282 G T EIF2S1 Missense_Mutation p.R266M 0.08 deleterious(0.02) benign(0.022) TCGA-77-A5G3-01 14 73029193 73029193 C A RGS6 3'Flank 0.21 TCGA-77-A5G3-01 14 74874622 74874622 C A SYNDIG1L Missense_Mutation p.G163V 0.31 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 14 75278376 75278376 T C YLPM1 Missense_Mutation p.F1761S 0.07 possibly_damaging(0.85) TCGA-77-A5G3-01 14 79423660 79423660 G T NRXN3 Missense_Mutation p.R411I 0.11 deleterious(0) probably_damaging(0.974) TCGA-77-A5G3-01 14 89130859 89130859 G T EML5 Silent p.T1129T 0.37 TCGA-77-A5G3-01 14 92347679 92347679 C A FBLN5 Missense_Mutation p.D316Y 0.24 deleterious(0.03) benign(0.44) TCGA-77-A5G3-01 14 94469682 94469682 C T LINC00521 RNA 0.16 TCGA-77-A5G3-01 15 100636629 100636629 C A ADAMTS17 Missense_Mutation p.G690V 0.09 deleterious(0.01) probably_damaging(0.993) TCGA-77-A5G3-01 15 20651236 20651236 A G HERC2P3 RNA 0.41 TCGA-77-A5G3-01 15 20658912 20658912 C T HERC2P3 RNA 0.14 TCGA-77-A5G3-01 15 25425552 25425552 C A SNORD115-6 5'Flank 0.14 TCGA-77-A5G3-01 15 25430589 25430589 G C SNORD115-10 5'Flank 0.53 TCGA-77-A5G3-01 15 25470387 25470387 G T SNORD115-30 RNA 0.35 TCGA-77-A5G3-01 15 25474166 25474166 A G SNORD115-32 RNA 0.36 TCGA-77-A5G3-01 15 25477476 25477476 G T SNORD115-33 3'Flank 0.10 TCGA-77-A5G3-01 15 28538069 28538069 G C HERC2 Nonsense_Mutation p.S96* 0.15 TCGA-77-A5G3-01 15 31355450 31355450 C T TRPM1 Missense_Mutation p.G296D 0.38 deleterious(0.01) probably_damaging(1) TCGA-77-A5G3-01 15 33920762 33920762 T A RYR3 Missense_Mutation p.W889R 0.12 probably_damaging(1) TCGA-77-A5G3-01 15 35084632 35084632 C G ACTC1 Missense_Mutation p.R198P 0.31 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-77-A5G3-01 15 40568171 40568171 G T PAK6 Missense_Mutation p.R641L 0.32 deleterious(0) probably_damaging(0.999) TCGA-77-A5G3-01 15 40907555 40907555 G A CASC5 Missense_Mutation p.D127N 0.20 deleterious(0.05) benign(0.037) TCGA-77-A5G3-01 15 40915885 40915885 C T CASC5 Silent p.L1167L 0.28 TCGA-77-A5G3-01 15 43577114 43577114 G A TGM7 Missense_Mutation p.S301F 0.20 deleterious(0) probably_damaging(0.975) TCGA-77-A5G3-01 15 50264932 50264932 A G ATP8B4 Missense_Mutation p.Y364H 0.11 deleterious(0.01) possibly_damaging(0.766) TCGA-77-A5G3-01 15 50757386 50757386 A G USP8 Silent p.P228P 0.25 TCGA-77-A5G3-01 15 54305975 54305975 G A UNC13C Missense_Mutation p.R292H 0.11 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-77-A5G3-01 15 62274661 62274661 T G VPS13C Missense_Mutation p.T676P 0.12 deleterious(0) possibly_damaging(0.714) TCGA-77-A5G3-01 15 63111781 63111781 G T TLN2 Missense_Mutation p.A2280S 0.38 tolerated(0.82) benign(0.01) TCGA-77-A5G3-01 15 63433919 63433919 C G LACTB Missense_Mutation p.S520C 0.10 tolerated(0.09) benign(0.048) TCGA-77-A5G3-01 15 63988490 63988490 C G HERC1 Missense_Mutation p.E1652Q 0.17 possibly_damaging(0.777) TCGA-77-A5G3-01 15 72190111 72190111 G C MYO9A Nonsense_Mutation p.S1578* 0.08 TCGA-77-A5G3-01 15 76254216 76254216 C T NRG4 Silent p.L68L 0.11 TCGA-77-A5G3-01 15 86278320 86278320 C T AKAP13 Silent p.S2464S 0.32 TCGA-77-A5G3-01 15 88524476 88524476 C A NTRK3 Intron 0.33 TCGA-77-A5G3-01 15 89402486 89402486 C A ACAN Missense_Mutation p.Q2224K 0.13 deleterious(0.01) possibly_damaging(0.9) TCGA-77-A5G3-01 16 11001734 11001734 G T CIITA Silent p.R795R 0.14 TCGA-77-A5G3-01 16 111667 111667 G A RHBDF1 Silent p.F412F 0.24 TCGA-77-A5G3-01 16 14280728 14280729 - T MKL2 Intron 0.17 TCGA-77-A5G3-01 16 22826365 22826365 C A HS3ST2 Missense_Mutation p.T145K 0.14 deleterious(0.01) benign(0.195) TCGA-77-A5G3-01 16 28619650 28619650 C A SULT1A1 Missense_Mutation p.A112S 0.27 tolerated(0.19) benign(0.007) TCGA-77-A5G3-01 16 31499679 31499679 C A SLC5A2 Intron 0.17 TCGA-77-A5G3-01 16 47699857 47699857 G A PHKB Intron 0.11 TCGA-77-A5G3-01 16 48227839 48227839 G A ABCC11 Missense_Mutation p.T820M 0.12 tolerated(0.19) benign(0.097) TCGA-77-A5G3-01 16 48242371 48242371 C G ABCC11 Missense_Mutation p.G549R 0.22 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 16 51174819 51174819 C A SALL1 Silent p.A438A 0.28 TCGA-77-A5G3-01 16 54967481 54967481 C T IRX5 Missense_Mutation p.S383L 0.43 tolerated(0.11) unknown(0) TCGA-77-A5G3-01 16 68266291 68266296 CCATGT - ESRP2 In_Frame_Del p.H311_G313delinsR 0.11 TCGA-77-A5G3-01 16 68714940 68714940 G A CDH3 Missense_Mutation p.V313M 0.10 tolerated(0.07) benign(0.026) TCGA-77-A5G3-01 16 711728 711728 G A WDR90 Missense_Mutation p.G1269S 0.15 deleterious(0) probably_damaging(0.998) TCGA-77-A5G3-01 16 71418697 71418697 G T CALB2 Silent p.L195L 0.12 TCGA-77-A5G3-01 16 72153995 72153995 G A PMFBP1 Intron 0.09 TCGA-77-A5G3-01 16 744666 744666 G A FBXL16 Missense_Mutation p.A420V 0.21 tolerated(0.15) benign(0.003) TCGA-77-A5G3-01 16 87446180 87446180 G A ZCCHC14 Missense_Mutation p.S579L 0.12 tolerated_low_confidence(0.17) benign(0.083) TCGA-77-A5G3-01 17 10304053 10304053 G A MYH8 Missense_Mutation p.A1130V 0.46 deleterious(0.01) benign(0.05) TCGA-77-A5G3-01 17 16638283 16638283 G T CCDC144A Nonsense_Mutation p.E900* 0.19 TCGA-77-A5G3-01 17 17117027 17117027 T A FLCN Missense_Mutation p.Y561F 0.32 tolerated(0.21) benign(0.021) TCGA-77-A5G3-01 17 18566371 18566371 C G ZNF286B Missense_Mutation p.D150H 0.17 tolerated(0.48) possibly_damaging(0.907) TCGA-77-A5G3-01 17 26686409 26686409 C G TMEM199 Silent p.T119T 0.17 TCGA-77-A5G3-01 17 26816267 26816267 G C SLC13A2 Silent p.A46A 0.10 TCGA-77-A5G3-01 17 27044286 27044286 C T RAB34 Missense_Mutation p.R57K 0.32 tolerated(0.8) benign(0) TCGA-77-A5G3-01 17 28598303 28598303 C A BLMH Missense_Mutation p.A378S 0.13 deleterious(0.02) probably_damaging(0.972) TCGA-77-A5G3-01 17 37813330 37813330 G T STARD3 Missense_Mutation p.D97Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-77-A5G3-01 17 37922530 37922530 C T IKZF3 Missense_Mutation p.R348Q 0.22 tolerated(0.26) benign(0.012) TCGA-77-A5G3-01 17 38933276 38933278 TTG - KRT27 In_Frame_Del p.N451del 0.17 TCGA-77-A5G3-01 17 39567582 39567582 T C AC003958.2 RNA 0.19 TCGA-77-A5G3-01 17 41234463 41234463 G A BRCA1 Missense_Mutation p.L1439F 0.18 deleterious(0.02) benign(0.126) TCGA-77-A5G3-01 17 42855218 42855218 G T ADAM11 Missense_Mutation p.C686F 0.18 deleterious(0) probably_damaging(0.999) TCGA-77-A5G3-01 17 42927736 42927736 G A HIGD1B Missense_Mutation p.R91K 0.14 tolerated(0.88) benign(0.008) TCGA-77-A5G3-01 17 43552621 43552621 C T PLEKHM1 Silent p.T256T 0.08 TCGA-77-A5G3-01 17 48918239 48918239 G - WFIKKN2 Frame_Shift_Del p.E532Rfs*75 0.20 TCGA-77-A5G3-01 17 51900754 51900754 C G KIF2B Silent p.P120P 0.19 TCGA-77-A5G3-01 17 51901585 51901585 G T KIF2B Silent p.V397V 0.07 TCGA-77-A5G3-01 17 56404048 56404048 A G BZRAP1 Missense_Mutation p.M146T 0.09 deleterious(0) benign(0.254) TCGA-77-A5G3-01 17 56572893 56572893 C T MTMR4 Silent p.R870R 0.15 TCGA-77-A5G3-01 17 57288083 57288083 A C SMG8 Missense_Mutation p.D224A 0.22 tolerated(0.63) possibly_damaging(0.515) TCGA-77-A5G3-01 17 68129313 68129313 C T KCNJ16 Missense_Mutation p.S362F 0.15 tolerated(0.25) benign(0.207) TCGA-77-A5G3-01 17 68129320 68129320 G T KCNJ16 Silent p.T364T 0.14 TCGA-77-A5G3-01 17 74383387 74383387 C A SPHK1 Missense_Mutation p.A378E 0.20 deleterious(0.02) benign(0.257) TCGA-77-A5G3-01 17 7577537 7577537 C A TP53 Silent p.R248R 0.46 TCGA-77-A5G3-01 17 7577538 7577538 C A TP53 Missense_Mutation p.R248L 0.46 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 17 7577548 7577548 C A TP53 Missense_Mutation p.G245C 0.36 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 17 78185978 78185978 C A SGSH Missense_Mutation p.G281C 0.24 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 17 78341603 78341603 G T RNF213 Missense_Mutation p.R3976L 0.07 benign(0.024) TCGA-77-A5G3-01 17 78350700 78350700 A T RNF213 Missense_Mutation p.M4483L 0.17 probably_damaging(0.986) TCGA-77-A5G3-01 17 79425850 79425850 G T RP11-1055B8.7 Silent p.R1820R 0.13 TCGA-77-A5G3-01 18 12351162 12351162 G A AFG3L2 Nonsense_Mutation p.R492* 0.16 TCGA-77-A5G3-01 18 12706612 12706612 A T PSMG2 Missense_Mutation p.M41L 0.19 tolerated(0.34) benign(0.01) TCGA-77-A5G3-01 18 13116453 13116453 C T CEP192 Missense_Mutation p.S2456L 0.23 deleterious(0) possibly_damaging(0.628) TCGA-77-A5G3-01 18 13387720 13387720 G A LDLRAD4 5'UTR 0.23 TCGA-77-A5G3-01 18 14543189 14543189 G T POTEC 5'Flank 0.15 TCGA-77-A5G3-01 18 30349867 30349867 G T KLHL14 Missense_Mutation p.P230T 0.34 tolerated(0.06) probably_damaging(0.92) TCGA-77-A5G3-01 18 32887076 32887076 G C ZNF271 RNA 0.13 TCGA-77-A5G3-01 18 40503728 40503728 C A RIT2 Missense_Mutation p.A79S 0.27 tolerated(0.06) possibly_damaging(0.9) TCGA-77-A5G3-01 18 43678266 43678266 G T ATP5A1 Intron 0.67 TCGA-77-A5G3-01 18 50432606 50432606 T A DCC Missense_Mutation p.L202H 0.14 tolerated(0.06) benign(0.227) TCGA-77-A5G3-01 18 50589695 50589695 C G DCC Missense_Mutation p.H336D 0.13 deleterious(0.01) benign(0.01) TCGA-77-A5G3-01 18 50705430 50705430 A G DCC Missense_Mutation p.N506S 0.20 tolerated(0.06) probably_damaging(0.944) TCGA-77-A5G3-01 18 54281738 54281738 G C TXNL1 Missense_Mutation p.L218V 0.11 tolerated(0.08) benign(0.025) TCGA-77-A5G3-01 18 5434011 5434011 C A EPB41L3 Missense_Mutation p.D239Y 0.06 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 18 66564492 66564492 G C CCDC102B Missense_Mutation p.D364H 0.12 tolerated(0.09) benign(0.126) TCGA-77-A5G3-01 18 67753920 67753920 C G RTTN Missense_Mutation p.A1435P 0.17 deleterious(0) probably_damaging(0.999) TCGA-77-A5G3-01 18 72344178 72344178 C A ZNF407 Silent p.T401T 0.11 TCGA-77-A5G3-01 19 10097415 10097415 C T COL5A3 Missense_Mutation p.G722D 0.21 unknown(0) TCGA-77-A5G3-01 19 10625339 10625339 C A S1PR5 Missense_Mutation p.V117L 0.28 deleterious(0.03) benign(0.202) TCGA-77-A5G3-01 19 13397521 13397521 G T CACNA1A Missense_Mutation p.Q1117K 0.41 benign(0.007) TCGA-77-A5G3-01 19 13920004 13920004 G T ZSWIM4 Missense_Mutation p.D328Y 0.13 deleterious(0) probably_damaging(0.934) TCGA-77-A5G3-01 19 16918608 16918608 C T NWD1 Silent p.I1316I 0.33 TCGA-77-A5G3-01 19 17752350 17752350 C T UNC13A Missense_Mutation p.V830M 0.18 deleterious(0.03) possibly_damaging(0.507) TCGA-77-A5G3-01 19 17942604 17942604 C T JAK3 Missense_Mutation p.R895H 0.17 deleterious(0.03) probably_damaging(0.911) TCGA-77-A5G3-01 19 1952934 1952934 G A CSNK1G2 Intron 0.38 TCGA-77-A5G3-01 19 2353177 2353177 C T LLfos-48D6.1 Intron 0.47 TCGA-77-A5G3-01 19 30934733 30934733 G T ZNF536 Silent p.L88L 0.12 TCGA-77-A5G3-01 19 30935363 30935363 G A ZNF536 Silent p.K298K 0.22 TCGA-77-A5G3-01 19 30935364 30935364 C A ZNF536 Missense_Mutation p.P299T 0.22 deleterious(0) probably_damaging(0.998) TCGA-77-A5G3-01 19 30935450 30935450 G T ZNF536 Missense_Mutation p.E327D 0.16 tolerated(0.11) probably_damaging(0.986) TCGA-77-A5G3-01 19 3638903 3638903 C T PIP5K1C Silent p.A633A 0.37 TCGA-77-A5G3-01 19 36884242 36884242 C G ZFP82 Missense_Mutation p.G334R 0.07 deleterious(0) probably_damaging(0.998) TCGA-77-A5G3-01 19 38795048 38795048 G T C19orf33 Missense_Mutation p.G19V 0.33 deleterious_low_confidence(0) benign(0.42) TCGA-77-A5G3-01 19 39127533 39127533 G T EIF3K Silent p.V210V 0.29 TCGA-77-A5G3-01 19 39664633 39664633 G T PAK4 Nonsense_Mutation p.E361* 0.33 TCGA-77-A5G3-01 19 3979894 3979894 C A EEF2 Missense_Mutation p.R506I 0.17 deleterious(0) probably_damaging(0.997) TCGA-77-A5G3-01 19 40424469 40424469 C A FCGBP Silent p.V578V 0.29 TCGA-77-A5G3-01 19 42396299 42396299 C A ARHGEF1 Intron 0.08 TCGA-77-A5G3-01 19 42471896 42471896 C T ATP1A3 Missense_Mutation p.G960R 0.06 deleterious(0) probably_damaging(0.983) TCGA-77-A5G3-01 19 44831951 44831951 G C ZNF112 Missense_Mutation p.Q793E 0.07 deleterious(0.02) probably_damaging(0.933) TCGA-77-A5G3-01 19 45716341 45716341 G A EXOC3L2 Missense_Mutation p.R406W 0.24 deleterious_low_confidence(0.01) unknown(0) TCGA-77-A5G3-01 19 45912598 45912598 G A CD3EAP Missense_Mutation p.G458R 0.28 tolerated(0.16) benign(0.246) TCGA-77-A5G3-01 19 46664091 46664091 T A IGFL2 Silent p.G109G 0.14 TCGA-77-A5G3-01 19 47593414 47593414 C A ZC3H4 Silent p.T175T 0.10 TCGA-77-A5G3-01 19 49813313 49813313 C G SLC6A16 Missense_Mutation p.M228I 0.20 deleterious(0.01) benign(0.031) TCGA-77-A5G3-01 19 51984737 51984737 C G CEACAM18 Missense_Mutation p.T225S 0.10 tolerated(0.29) benign(0.056) TCGA-77-A5G3-01 19 52272279 52272279 G T FPR2 Missense_Mutation p.R123L 0.13 deleterious(0) probably_damaging(0.99) TCGA-77-A5G3-01 19 52627177 52627177 T - ZNF616 Frame_Shift_Del p.G47Vfs*7 0.09 TCGA-77-A5G3-01 19 52825976 52825976 C G ZNF480 Silent p.V491V 0.18 TCGA-77-A5G3-01 19 53270135 53270135 G A ZNF600 Missense_Mutation p.H292Y 0.23 deleterious(0) probably_damaging(0.993) TCGA-77-A5G3-01 19 54675784 54675784 C - TMC4 Frame_Shift_Del p.V56Cfs*94 0.20 TCGA-77-A5G3-01 19 54744751 54744751 G A LILRA6 Missense_Mutation p.S304F 0.07 deleterious(0.03) possibly_damaging(0.907) TCGA-77-A5G3-01 19 54746386 54746386 T A LILRA6 Missense_Mutation p.T19S 0.19 tolerated(0.06) benign(0.411) TCGA-77-A5G3-01 19 55147139 55147140 - C LILRB1 Intron 0.22 TCGA-77-A5G3-01 19 55341879 55341879 G A KIR3DL1 3'UTR 0.12 TCGA-77-A5G3-01 19 55556622 55556622 T A RDH13 Silent p.T272T 0.08 TCGA-77-A5G3-01 19 56370543 56370543 A C NLRP4 Missense_Mutation p.Y595S 0.08 deleterious(0.01) benign(0.075) TCGA-77-A5G3-01 19 56423985 56423985 C A NLRP13 Missense_Mutation p.D400Y 0.16 deleterious(0.03) possibly_damaging(0.575) TCGA-77-A5G3-01 19 57176031 57176031 G A ZNF835 Missense_Mutation p.S179L 0.27 deleterious(0) probably_damaging(0.975) TCGA-77-A5G3-01 19 57176145 57176145 G T ZNF835 Missense_Mutation p.P141H 0.13 tolerated(0.36) possibly_damaging(0.519) TCGA-77-A5G3-01 19 58231940 58231940 C A ZNF671 Missense_Mutation p.R505M 0.20 deleterious(0) possibly_damaging(0.641) TCGA-77-A5G3-01 19 58639814 58639814 G A ZNF329 Missense_Mutation p.R353W 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-77-A5G3-01 19 5866546 5866546 G A FUT5 3'UTR 0.21 TCGA-77-A5G3-01 19 7125387 7125387 C G INSR Silent p.A1055A 0.23 TCGA-77-A5G3-01 19 7174591 7174591 C A INSR Intron 0.38 TCGA-77-A5G3-01 19 8186256 8186256 G T FBN3 Missense_Mutation p.R1033S 0.16 tolerated(0.15) possibly_damaging(0.792) TCGA-77-A5G3-01 19 8997538 8997538 T A MUC16 Splice_Site p.X13629_splice 0.29 TCGA-77-A5G3-01 19 9204336 9204336 G A OR1M1 Missense_Mutation p.R139H 0.24 tolerated(0.09) benign(0.016) TCGA-77-A5G3-01 19 9492347 9492347 C A ZNF177 Missense_Mutation p.T447N 0.36 deleterious(0.01) probably_damaging(0.989) TCGA-77-A5G3-01 1 104162321 104162322 GA - AMY2A Frame_Shift_Del p.D221Hfs*10 0.15 TCGA-77-A5G3-01 1 118501624 118501624 C G WDR3 Missense_Mutation p.R892G 0.13 deleterious(0) possibly_damaging(0.881) TCGA-77-A5G3-01 1 11863036 11863036 C A MTHFR Silent p.R46R 0.33 TCGA-77-A5G3-01 1 12337903 12337903 G T VPS13D Missense_Mutation p.D1420Y 0.34 probably_damaging(0.993) TCGA-77-A5G3-01 1 151379451 151379451 G A POGZ Silent p.G827G 0.14 TCGA-77-A5G3-01 1 152278736 152278736 C T FLG Missense_Mutation p.G2876R 0.04 possibly_damaging(0.748) TCGA-77-A5G3-01 1 153905483 153905483 C A DENND4B Silent p.L1159L 0.07 TCGA-77-A5G3-01 1 154524587 154524587 T G UBE2Q1 Silent p.L316L 0.22 TCGA-77-A5G3-01 1 155271149 155271149 C A PKLR Missense_Mutation p.R13L 0.12 tolerated_low_confidence(0.68) benign(0) TCGA-77-A5G3-01 1 157566118 157566118 C G FCRL4 Missense_Mutation p.A18P 0.13 deleterious(0.01) probably_damaging(0.957) TCGA-77-A5G3-01 1 157718410 157718410 T A FCRL2 Splice_Site p.X465_splice 0.23 TCGA-77-A5G3-01 1 158449880 158449880 G T OR10R2 Silent p.L71L 0.12 TCGA-77-A5G3-01 1 158646020 158646020 G C SPTA1 Missense_Mutation p.I341M 0.18 deleterious(0) probably_damaging(0.939) TCGA-77-A5G3-01 1 158655066 158655066 C G SPTA1 Missense_Mutation p.L32F 0.11 deleterious(0) probably_damaging(0.998) TCGA-77-A5G3-01 1 159162401 159162401 C A CADM3 Missense_Mutation p.S122Y 0.16 tolerated(0.07) possibly_damaging(0.833) TCGA-77-A5G3-01 1 160249286 160249286 G A PEX19 3'UTR 0.18 TCGA-77-A5G3-01 1 160264381 160264381 C A COPA Missense_Mutation p.G866W 0.20 deleterious(0) probably_damaging(0.917) TCGA-77-A5G3-01 1 161494857 161494858 - T HSPA6 Frame_Shift_Ins p.Q139Pfs*16 0.21 TCGA-77-A5G3-01 1 161993146 161993146 G A OLFML2B Silent p.L25L 0.08 TCGA-77-A5G3-01 1 166838722 166838722 C A TADA1 Silent p.L64L 0.09 TCGA-77-A5G3-01 1 167097779 167097779 C G DUSP27 Missense_Mutation p.I1137M 0.09 deleterious(0) possibly_damaging(0.826) TCGA-77-A5G3-01 1 169511873 169511873 C A F5 Missense_Mutation p.V819F 0.04 deleterious(0) possibly_damaging(0.668) TCGA-77-A5G3-01 1 169525909 169525909 A T F5 Silent p.S309S 0.13 TCGA-77-A5G3-01 1 171553192 171553192 C A PRRC2C Missense_Mutation p.L2501I 0.21 probably_damaging(0.99) TCGA-77-A5G3-01 1 175348860 175348860 G A TNR Silent p.P597P 0.25 TCGA-77-A5G3-01 1 178514955 178514955 T G C1ORF220 Nonsense_Mutation p.L114* 0.06 TCGA-77-A5G3-01 1 186276530 186276530 C A PRG4 Missense_Mutation p.P560H 0.19 unknown(0) TCGA-77-A5G3-01 1 186282820 186282820 C A PRG4 Nonsense_Mutation p.Y1375* 0.07 TCGA-77-A5G3-01 1 186337072 186337072 T A TPR Nonsense_Mutation p.R125* 0.17 TCGA-77-A5G3-01 1 18809749 18809749 C A KLHDC7A Silent p.G758G 0.09 TCGA-77-A5G3-01 1 190067354 190067354 C A BRINP3 Missense_Mutation p.A699S 0.06 deleterious(0) probably_damaging(0.991) TCGA-77-A5G3-01 1 190423866 190423866 C A BRINP3 Missense_Mutation p.G52V 0.10 deleterious(0) probably_damaging(0.999) TCGA-77-A5G3-01 1 196749048 196749048 C T CFHR3 Silent p.T125T 0.64 TCGA-77-A5G3-01 1 197021887 197021887 G A F13B Missense_Mutation p.H478Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-77-A5G3-01 1 201844329 201844329 G A IPO9 Silent p.K996K 0.19 TCGA-77-A5G3-01 1 205744025 205744025 C G RAB7L1 Missense_Mutation p.K20N 0.14 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 1 214170222 214170222 G C PROX1 Missense_Mutation p.G115A 0.13 tolerated(0.29) benign(0.081) TCGA-77-A5G3-01 1 214170400 214170400 G T PROX1 Silent p.R174R 0.18 TCGA-77-A5G3-01 1 216251577 216251577 C A USH2A Missense_Mutation p.G1809V 0.08 probably_damaging(0.949) TCGA-77-A5G3-01 1 223976878 223976878 T C TP53BP2 Splice_Site p.X999_splice 0.12 TCGA-77-A5G3-01 1 22843876 22843876 G C ZBTB40 Missense_Mutation p.D918H 0.37 deleterious(0) probably_damaging(0.961) TCGA-77-A5G3-01 1 228480326 228480326 G A OBSCN Nonsense_Mutation p.W3998* 0.07 TCGA-77-A5G3-01 1 231132892 231132892 C G ARV1 Silent p.L233L 0.13 TCGA-77-A5G3-01 1 237813197 237813197 C A RYR2 Missense_Mutation p.D2511E 0.21 benign(0.067) TCGA-77-A5G3-01 1 237870528 237870528 A G RYR2 Missense_Mutation p.N3287S 0.31 benign(0.066) TCGA-77-A5G3-01 1 242161882 242161882 G - MAP1LC3C Frame_Shift_Del p.P52Rfs*13 0.19 TCGA-77-A5G3-01 1 243419431 243419431 G C SDCCAG8 5'UTR 0.16 TCGA-77-A5G3-01 1 247014377 247014377 G A AHCTF1 Missense_Mutation p.A1653V 0.20 tolerated(1) benign(0.001) TCGA-77-A5G3-01 1 247695053 247695053 C T OR2C3 Missense_Mutation p.G254E 0.12 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 1 247769689 247769690 - A OR2G3 Frame_Shift_Ins p.D269Gfs*? 0.11 TCGA-77-A5G3-01 1 247835690 247835690 G C OR13G1 Missense_Mutation p.I218M 0.06 deleterious(0) probably_damaging(0.989) TCGA-77-A5G3-01 1 247978731 247978731 A G OR14A16 Silent p.L101L 0.25 TCGA-77-A5G3-01 1 248112458 248112458 G T OR2L8 Missense_Mutation p.S100I 0.19 tolerated(0.54) benign(0.002) TCGA-77-A5G3-01 1 248366937 248366937 A T OR2M3 Missense_Mutation p.S190C 0.09 deleterious(0) possibly_damaging(0.542) TCGA-77-A5G3-01 1 248457962 248457962 C A OR2T12 Missense_Mutation p.V307L 0.07 tolerated(0.58) benign(0.003) TCGA-77-A5G3-01 1 248512199 248512199 C T OR14C36 Silent p.I41I 0.20 TCGA-77-A5G3-01 1 248569692 248569692 G T OR2T1 Missense_Mutation p.V133F 0.07 tolerated(0.07) benign(0.043) TCGA-77-A5G3-01 1 248570108 248570108 C A OR2T1 Silent p.I271I 0.14 TCGA-77-A5G3-01 1 27332938 27332938 C T FAM46B Missense_Mutation p.E259K 0.32 tolerated(0.32) benign(0.004) TCGA-77-A5G3-01 1 31349483 31349483 C A SDC3 Silent p.P262P 0.44 TCGA-77-A5G3-01 1 33958989 33958989 A T ZSCAN20 Missense_Mutation p.K549N 0.20 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 1 34189879 34189879 C A CSMD2 Silent p.G933G 0.47 TCGA-77-A5G3-01 1 35972486 35972486 T A KIAA0319L Missense_Mutation p.L131F 0.60 tolerated_low_confidence(0.21) benign(0.002) TCGA-77-A5G3-01 1 3644697 3644697 C T TP73 Silent p.F330F 0.12 TCGA-77-A5G3-01 1 42045928 42045928 G C HIVEP3 Missense_Mutation p.P1514R 0.55 benign(0.209) TCGA-77-A5G3-01 1 55130851 55130851 G A MROH7 Missense_Mutation p.E415K 0.24 deleterious_low_confidence(0.02) benign(0.031) TCGA-77-A5G3-01 1 68897043 68897043 T C RPE65 Silent p.Q420Q 0.47 TCGA-77-A5G3-01 1 74902173 74902173 A T TNNI3K Missense_Mutation p.Q715L 0.42 tolerated(0.37) benign(0.005) TCGA-77-A5G3-01 1 75862267 75862267 C T SLC44A5 Splice_Site p.X18_splice 0.30 TCGA-77-A5G3-01 1 77763606 77763606 G A AK5 Missense_Mutation p.A225T 0.31 tolerated(0.1) possibly_damaging(0.904) TCGA-77-A5G3-01 1 86557973 86557973 C T COL24A1 Missense_Mutation p.G544S 0.24 deleterious(0.03) probably_damaging(0.914) TCGA-77-A5G3-01 1 91779611 91779611 A G HFM1 Silent p.S1049S 0.33 TCGA-77-A5G3-01 1 94696985 94696985 A T ARHGAP29 Nonsense_Mutation p.Y61* 0.24 TCGA-77-A5G3-01 20 18143286 18143286 A G CSRP2BP Silent p.K456K 0.20 TCGA-77-A5G3-01 20 2967461 2967461 A - PTPRA Frame_Shift_Del p.I165Sfs*6 0.09 TCGA-77-A5G3-01 20 30408270 30408270 G T MYLK2 Missense_Mutation p.A132S 0.16 tolerated(0.16) benign(0.146) TCGA-77-A5G3-01 20 30822388 30822388 G C POFUT1 Missense_Mutation p.R364P 0.18 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 20 32217522 32217522 C T CBFA2T2 Intron 0.09 TCGA-77-A5G3-01 20 33588337 33588337 C A MYH7B Missense_Mutation p.H1717N 0.19 benign(0.017) TCGA-77-A5G3-01 20 34064349 34064349 G A CEP250 Missense_Mutation p.A598T 0.22 benign(0.028) TCGA-77-A5G3-01 20 34446252 34446252 A C PHF20 Silent p.G123G 0.06 TCGA-77-A5G3-01 20 44637620 44637620 G T MMP9 Missense_Mutation p.A19S 0.35 tolerated(0.13) benign(0.018) TCGA-77-A5G3-01 20 56140733 56140733 C G PCK1 Missense_Mutation p.S581C 0.17 deleterious(0) possibly_damaging(0.472) TCGA-77-A5G3-01 20 60892081 60892081 T C LAMA5 Splice_Site p.X2504_splice 0.18 TCGA-77-A5G3-01 21 15873005 15873005 C T SAMSN1 Missense_Mutation p.G273R 0.07 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 21 19725244 19725244 C A TMPRSS15 Missense_Mutation p.D383Y 0.07 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 21 31588053 31588053 C T CLDN8 Missense_Mutation p.C64Y 0.13 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 21 31744391 31744391 C T KRTAP13-2 Silent p.Q47Q 0.33 TCGA-77-A5G3-01 21 33830024 33830024 A C EVA1C Missense_Mutation p.Q159H 0.29 deleterious(0.01) possibly_damaging(0.781) TCGA-77-A5G3-01 21 34876818 34876818 G T GART Silent p.I914I 0.15 TCGA-77-A5G3-01 21 45540253 45540253 G T PWP2 Missense_Mutation p.G405C 0.26 deleterious(0) probably_damaging(0.999) TCGA-77-A5G3-01 21 45681121 45681121 C T DNMT3L Missense_Mutation p.D8N 0.23 tolerated(0.12) benign(0.382) TCGA-77-A5G3-01 21 47574179 47574179 C A FTCD Missense_Mutation p.G41V 0.26 deleterious(0) probably_damaging(0.999) TCGA-77-A5G3-01 22 17308747 17308747 T A HSFY1P1 RNA 0.47 TCGA-77-A5G3-01 22 22868454 22868454 C T ZNF280A Missense_Mutation p.G501R 0.04 tolerated(0.13) benign(0.127) TCGA-77-A5G3-01 22 22890969 22890969 C A PRAME Missense_Mutation p.Q350H 0.07 tolerated(0.05) probably_damaging(0.994) TCGA-77-A5G3-01 22 25297865 25297865 C T SGSM1 Silent p.D947D 0.30 TCGA-77-A5G3-01 22 30124659 30124659 G T CABP7 Silent p.L98L 0.26 TCGA-77-A5G3-01 22 32015667 32015667 G C PISD Silent p.P353P 0.15 TCGA-77-A5G3-01 22 32586678 32586679 - T RFPL2 3'UTR 0.18 TCGA-77-A5G3-01 22 32590387 32590387 T G RFPL2 Missense_Mutation p.Q70H 0.25 tolerated_low_confidence(0.1) benign(0) TCGA-77-A5G3-01 22 41973896 41973896 C T PMM1 Silent p.E194E 0.12 TCGA-77-A5G3-01 2 108499188 108499188 A C RGPD4 Missense_Mutation p.N1709H 0.16 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-77-A5G3-01 2 116510798 116510798 G T DPP10 Silent p.V337V 0.12 TCGA-77-A5G3-01 2 116600038 116600038 G C DPP10 3'Flank 0.25 TCGA-77-A5G3-01 2 119735483 119735483 G T MARCO Missense_Mutation p.K246N 0.14 deleterious(0.01) probably_damaging(0.987) TCGA-77-A5G3-01 2 1241737 1241737 C A SNTG2 Missense_Mutation p.T266N 0.29 tolerated(0.08) benign(0.16) TCGA-77-A5G3-01 2 125504864 125504864 A C CNTNAP5 Silent p.G711G 0.39 TCGA-77-A5G3-01 2 127453538 127453538 G T GYPC Silent p.V69V 0.17 TCGA-77-A5G3-01 2 128339887 128339887 T C MYO7B Silent p.Y403Y 0.12 TCGA-77-A5G3-01 2 128412050 128412050 C A LIMS2 Nonsense_Mutation p.E127* 0.19 TCGA-77-A5G3-01 2 130738437 130738437 C A RAB6C Missense_Mutation p.P250H 0.10 deleterious_low_confidence(0) benign(0.184) TCGA-77-A5G3-01 2 132258533 132258533 A T AC093838.4 Splice_Site 0.31 TCGA-77-A5G3-01 2 133540062 133540062 C A NCKAP5 Missense_Mutation p.S1441I 0.28 tolerated(0.07) benign(0.251) TCGA-77-A5G3-01 2 133540550 133540550 G A NCKAP5 Silent p.F1278F 0.21 TCGA-77-A5G3-01 2 133721348 133721348 G C NCKAP5 Missense_Mutation p.T175R 0.18 deleterious(0.01) possibly_damaging(0.736) TCGA-77-A5G3-01 2 135782205 135782205 G T MAP3K19 Missense_Mutation p.P5T 0.20 deleterious_low_confidence(0) probably_damaging(0.911) TCGA-77-A5G3-01 2 138330097 138330097 G T THSD7B Nonsense_Mutation p.E1135* 0.13 TCGA-77-A5G3-01 2 141081490 141081490 C A LRP1B Missense_Mutation p.L4162F 0.09 possibly_damaging(0.587) TCGA-77-A5G3-01 2 141291664 141291664 C T LRP1B Missense_Mutation p.R2563H 0.30 possibly_damaging(0.812) TCGA-77-A5G3-01 2 149247789 149247789 C A MBD5 Missense_Mutation p.Q1297K 0.17 tolerated_low_confidence(0.2) unknown(0) TCGA-77-A5G3-01 2 155555317 155555317 C A KCNJ3 Missense_Mutation p.D10E 0.24 tolerated(1) benign(0.002) TCGA-77-A5G3-01 2 160604485 160604485 A C MARCH7 Silent p.S228S 0.12 TCGA-77-A5G3-01 2 163374453 163374453 G A KCNH7 Missense_Mutation p.P227S 0.08 tolerated(0.2) benign(0.231) TCGA-77-A5G3-01 2 165351018 165351018 C G GRB14 Missense_Mutation p.D467H 0.26 deleterious(0) probably_damaging(0.997) TCGA-77-A5G3-01 2 166532932 166532932 C A CSRNP3 Missense_Mutation p.F173L 0.25 deleterious(0) probably_damaging(0.979) TCGA-77-A5G3-01 2 168101202 168101202 C G XIRP2 Silent p.T1100T 0.19 TCGA-77-A5G3-01 2 168106725 168106726 CT A XIRP2 Frame_Shift_Del p.L2942* 0.19 TCGA-77-A5G3-01 2 168986072 168986072 G A STK39 Silent p.D356D 0.19 TCGA-77-A5G3-01 2 169828519 169828519 C G ABCB11 Missense_Mutation p.Q492H 0.28 deleterious(0.02) probably_damaging(0.918) TCGA-77-A5G3-01 2 173898655 173898655 A T RAPGEF4 Missense_Mutation p.K888M 0.06 deleterious(0) probably_damaging(0.998) TCGA-77-A5G3-01 2 178416060 178416061 - A TTC30B Frame_Shift_Ins p.A478Cfs*6 0.13 TCGA-77-A5G3-01 2 178481998 178481999 - A TTC30A Frame_Shift_Ins p.A478Cfs*6 0.11 TCGA-77-A5G3-01 2 179400015 179400015 G A TTN Missense_Mutation p.P33776L 0.14 TCGA-77-A5G3-01 2 179436600 179436600 A G TTN Silent p.N24753N 0.25 TCGA-77-A5G3-01 2 179478916 179478916 G T TTN Missense_Mutation p.S16403Y 0.29 TCGA-77-A5G3-01 2 179596297 179596297 G A TTN Silent p.F5732F 0.20 TCGA-77-A5G3-01 2 179599055 179599055 C A TTN Nonsense_Mutation p.E5166* 0.17 TCGA-77-A5G3-01 2 179600679 179600679 C T TTN Missense_Mutation p.G4832S 0.16 TCGA-77-A5G3-01 2 185801447 185801447 G T ZNF804A Nonsense_Mutation p.E442* 0.13 TCGA-77-A5G3-01 2 186671822 186671822 C A FSIP2 Missense_Mutation p.S6019Y 0.17 benign(0.126) TCGA-77-A5G3-01 2 1893197 1893197 T C MYT1L Missense_Mutation p.K777R 0.08 tolerated(0.1) possibly_damaging(0.898) TCGA-77-A5G3-01 2 189405951 189405951 C A GULP1 Missense_Mutation p.A102E 0.25 deleterious(0) probably_damaging(0.997) TCGA-77-A5G3-01 2 196720606 196720606 G A DNAH7 Nonsense_Mutation p.Q2842* 0.09 TCGA-77-A5G3-01 2 197863657 197863657 G A ANKRD44 Missense_Mutation p.A855V 0.20 deleterious(0.01) probably_damaging(0.911) TCGA-77-A5G3-01 2 210558817 210558817 A T MAP2 Silent p.A641A 0.25 TCGA-77-A5G3-01 2 210559009 210559009 G A MAP2 Silent p.P705P 0.18 TCGA-77-A5G3-01 2 21247985 21247985 A G APOB Silent p.N752N 0.17 TCGA-77-A5G3-01 2 216286948 216286948 G T FN1 Missense_Mutation p.T471K 0.26 deleterious(0) probably_damaging(0.996) TCGA-77-A5G3-01 2 225265815 225265815 A G FAM124B Missense_Mutation p.M224T 0.26 deleterious(0) benign(0) TCGA-77-A5G3-01 2 234360642 234360642 G T DGKD Missense_Mutation p.G734C 0.24 deleterious(0.01) probably_damaging(0.927) TCGA-77-A5G3-01 2 24951272 24951272 C A NCOA1 Missense_Mutation p.S938Y 0.23 deleterious(0) possibly_damaging(0.797) TCGA-77-A5G3-01 2 26951289 26951289 G T KCNK3 Silent p.S346S 0.20 TCGA-77-A5G3-01 2 27850513 27850513 C T CCDC121 Missense_Mutation p.E214K 0.15 tolerated(0.91) benign(0) TCGA-77-A5G3-01 2 3502833 3502833 C A ADI1 Silent p.R147R 0.16 TCGA-77-A5G3-01 2 3502834 3502834 C A ADI1 Missense_Mutation p.R147L 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-77-A5G3-01 2 3745032 3745032 C A ALLC Missense_Mutation p.T279K 0.13 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 2 38301533 38301534 - TCCT CYP1B1 Frame_Shift_Ins p.D333Efs*20 0.31 TCGA-77-A5G3-01 2 38975747 38975747 G C SRSF7 Silent p.R145R 0.19 TCGA-77-A5G3-01 2 48692654 48692654 G A PPP1R21 Missense_Mutation p.G257E 0.11 deleterious(0.01) possibly_damaging(0.635) TCGA-77-A5G3-01 2 48808602 48808602 C G STON1-GTF2A1L Missense_Mutation p.S277C 0.46 deleterious(0) possibly_damaging(0.479) TCGA-77-A5G3-01 2 49195966 49195966 T A FSHR Missense_Mutation p.K242M 0.53 deleterious(0) possibly_damaging(0.766) TCGA-77-A5G3-01 2 74710024 74710024 G T CCDC142 5'UTR 0.27 TCGA-77-A5G3-01 2 74719178 74719178 G T TTC31 Silent p.L308L 0.32 TCGA-77-A5G3-01 2 77745845 77745845 T A LRRTM4 Missense_Mutation p.I384F 0.13 tolerated(0.71) benign(0.033) TCGA-77-A5G3-01 2 79363252 79363252 A T REG1P RNA 0.33 TCGA-77-A5G3-01 2 79385858 79385858 G T REG3A Silent p.I38I 0.16 TCGA-77-A5G3-01 2 80136820 80136820 C - CTNNA2 Frame_Shift_Del p.D319Tfs*32 0.24 TCGA-77-A5G3-01 2 80530398 80530398 C G LRRTM1 Missense_Mutation p.D183H 0.18 deleterious(0) probably_damaging(0.999) TCGA-77-A5G3-01 2 87085387 87085387 G A CD8B Missense_Mutation p.H66Y 0.24 tolerated(0.11) benign(0.134) TCGA-77-A5G3-01 2 8916936 8916936 C T KIDINS220 Nonsense_Mutation p.W930* 0.19 TCGA-77-A5G3-01 2 89399827 89399827 T C IGKV1-16 Translation_Start_Site p.M1? 0.07 deleterious_low_confidence(0.03) possibly_damaging(0.488) TCGA-77-A5G3-01 2 89986822 89986822 C T IGKV2D-29 Missense_Mutation p.P35S 0.14 tolerated(0.15) benign(0.1) TCGA-77-A5G3-01 2 90139294 90139294 G C IGKV1D-16 Missense_Mutation p.C22S 0.16 deleterious(0.05) benign(0.065) TCGA-77-A5G3-01 2 90212129 90212129 G C IGKV3D-11 Missense_Mutation p.R74T 0.24 tolerated(0.09) benign(0.341) TCGA-77-A5G3-01 2 97526582 97526582 T C SEMA4C Silent p.P761P 0.32 TCGA-77-A5G3-01 2 98996644 98996644 G T CNGA3 Silent p.S74S 0.07 TCGA-77-A5G3-01 3 101066866 101066866 C A SENP7 Missense_Mutation p.D563Y 0.15 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 3 101066867 101066867 C G SENP7 Silent p.V562V 0.15 TCGA-77-A5G3-01 3 113595077 113595077 C T GRAMD1C Silent p.N143N 0.05 TCGA-77-A5G3-01 3 114070176 114070176 C A ZBTB20 Missense_Mutation p.C250F 0.19 tolerated_low_confidence(0.42) probably_damaging(0.962) TCGA-77-A5G3-01 3 123688971 123688971 G A ROPN1 Missense_Mutation p.L164F 0.05 deleterious(0) probably_damaging(0.999) TCGA-77-A5G3-01 3 124165706 124165706 T A KALRN Missense_Mutation p.Y1174N 0.16 tolerated(0.05) benign(0.284) TCGA-77-A5G3-01 3 124174169 124174169 G C KALRN Missense_Mutation p.R1231P 0.15 deleterious(0.01) probably_damaging(0.956) TCGA-77-A5G3-01 3 126220760 126220760 C T UROC1 Missense_Mutation p.G312S 0.08 tolerated(0.09) benign(0) TCGA-77-A5G3-01 3 126226877 126226877 C T UROC1 Missense_Mutation p.S158N 0.05 deleterious(0) probably_damaging(0.982) TCGA-77-A5G3-01 3 131254125 131254125 G T CPNE4 Missense_Mutation p.Q530K 0.15 deleterious(0) probably_damaging(0.93) TCGA-77-A5G3-01 3 1320162 1320162 C A CNTN6 Missense_Mutation p.L142I 0.24 deleterious(0.02) benign(0.44) TCGA-77-A5G3-01 3 133670158 133670158 C A SLCO2A1 Missense_Mutation p.R252L 0.17 deleterious(0) probably_damaging(0.95) TCGA-77-A5G3-01 3 134268005 134268005 C T CEP63 Missense_Mutation p.A390V 0.14 tolerated(0.09) benign(0.098) TCGA-77-A5G3-01 3 13655530 13655530 G T FBLN2 Missense_Mutation p.G532V 0.37 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 3 137964045 137964045 G T ARMC8 Intron 0.13 TCGA-77-A5G3-01 3 141904588 141904588 C A GK5 Intron 0.18 TCGA-77-A5G3-01 3 142222260 142222260 T A ATR Missense_Mutation p.L1744F 0.35 deleterious(0.02) benign(0.259) TCGA-77-A5G3-01 3 142224054 142224054 T C ATR Missense_Mutation p.E1708G 0.09 deleterious(0.03) probably_damaging(0.99) TCGA-77-A5G3-01 3 147109008 147109008 G T ZIC4 Missense_Mutation p.F288L 0.09 deleterious(0.03) probably_damaging(0.937) TCGA-77-A5G3-01 3 149459496 149459496 T A COMMD2 Nonsense_Mutation p.R138* 0.14 TCGA-77-A5G3-01 3 151095896 151095896 G C MED12L Missense_Mutation p.E1436D 0.23 deleterious(0.02) possibly_damaging(0.709) TCGA-77-A5G3-01 3 164906416 164906416 G T SLITRK3 Missense_Mutation p.P735T 0.18 deleterious(0.05) benign(0.034) TCGA-77-A5G3-01 3 164907197 164907197 G T SLITRK3 Silent p.G474G 0.07 TCGA-77-A5G3-01 3 183439882 183439882 C G YEATS2 Silent p.L165L 0.12 TCGA-77-A5G3-01 3 186570837 186570837 C A ADIPOQ 5'UTR 0.17 TCGA-77-A5G3-01 3 21467076 21467076 G T ZNF385D Missense_Mutation p.P254T 0.27 tolerated(0.58) benign(0.143) TCGA-77-A5G3-01 3 28476681 28476681 A T ZCWPW2 Missense_Mutation p.H138L 0.44 deleterious(0) probably_damaging(0.976) TCGA-77-A5G3-01 3 36485052 36485058 CAGGTGG - STAC Frame_Shift_Del p.G104Rfs*22 0.35 TCGA-77-A5G3-01 3 36872734 36872734 T C TRANK1 Silent p.P2736P 0.46 TCGA-77-A5G3-01 3 46245696 46245696 G T CCR1 Missense_Mutation p.L37M 0.17 deleterious(0) probably_damaging(0.985) TCGA-77-A5G3-01 3 48602552 48602552 C A COL7A1 Missense_Mutation p.W2870C 0.24 possibly_damaging(0.557) TCGA-77-A5G3-01 3 49569611 49569611 G A DAG1 Missense_Mutation p.S556N 0.42 tolerated(0.08) probably_damaging(0.985) TCGA-77-A5G3-01 3 49753120 49753120 C T RNF123 Silent p.F1041F 0.30 TCGA-77-A5G3-01 3 49841778 49841778 A C FAM212A Silent p.A74A 0.36 TCGA-77-A5G3-01 3 52740708 52740709 - T SPCS1 Frame_Shift_Ins p.S98Ffs*13 0.21 TCGA-77-A5G3-01 3 55003869 55003869 G A CACNA2D3 Missense_Mutation p.E852K 0.10 tolerated(0.22) benign(0.005) TCGA-77-A5G3-01 3 65342330 65342330 C A MAGI1 Missense_Mutation p.R1371I 0.27 deleterious(0.01) unknown(0) TCGA-77-A5G3-01 3 88040906 88040906 G C HTR1F Missense_Mutation p.G336A 0.34 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 3 93772190 93772190 A T ARL13B 3'UTR 0.21 TCGA-77-A5G3-01 3 98518483 98518483 C A DCBLD2 Silent p.G687G 0.14 TCGA-77-A5G3-01 4 103514672 103514672 G A NFKB1 Missense_Mutation p.G386E 0.17 tolerated(0.12) possibly_damaging(0.599) TCGA-77-A5G3-01 4 115997643 115997643 G C NDST4 Missense_Mutation p.L184V 0.22 tolerated(0.24) benign(0.013) TCGA-77-A5G3-01 4 122739241 122739241 T C CCNA2 Missense_Mutation p.Q403R 0.41 tolerated(0.21) benign(0.002) TCGA-77-A5G3-01 4 123336642 123336642 A G ADAD1 Missense_Mutation p.H453R 0.16 deleterious(0) benign(0.061) TCGA-77-A5G3-01 4 139101936 139101936 C T SLC7A11 Silent p.L375L 0.17 TCGA-77-A5G3-01 4 140651770 140651770 C A MAML3 Missense_Mutation p.V711L 0.29 probably_damaging(0.992) TCGA-77-A5G3-01 4 151504938 151504938 G T MAB21L2 Missense_Mutation p.V253L 0.41 tolerated(0.22) benign(0.002) TCGA-77-A5G3-01 4 162841644 162841644 G C FSTL5 Missense_Mutation p.F107L 0.28 tolerated(0.73) probably_damaging(0.983) TCGA-77-A5G3-01 4 164246825 164246825 T A NPY1R Missense_Mutation p.N262I 0.28 deleterious(0) probably_damaging(0.977) TCGA-77-A5G3-01 4 164394930 164394930 C A TKTL2 5'UTR 0.50 TCGA-77-A5G3-01 4 169194457 169194457 C T DDX60 Silent p.E849E 0.32 TCGA-77-A5G3-01 4 173150854 173150854 T A GALNTL6 Missense_Mutation p.D62E 0.13 tolerated(0.13) benign(0.033) TCGA-77-A5G3-01 4 173852380 173852380 C A GALNTL6 Nonsense_Mutation p.Y370* 0.24 TCGA-77-A5G3-01 4 183713768 183713768 C T TENM3 Silent p.N1981N 0.49 TCGA-77-A5G3-01 4 42068598 42068598 T A SLC30A9 Silent p.R368R 0.40 TCGA-77-A5G3-01 4 47597856 47597856 G C CORIN Missense_Mutation p.T1004S 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-77-A5G3-01 4 47788789 47788789 C A CORIN Missense_Mutation p.W121L 0.08 tolerated(0.13) benign(0.097) TCGA-77-A5G3-01 4 56832016 56832016 G T CEP135 Silent p.G345G 0.26 TCGA-77-A5G3-01 4 71114902 71114902 A T CSN3 Missense_Mutation p.Q92L 0.07 deleterious(0) benign(0.227) TCGA-77-A5G3-01 4 76861914 76861914 C A NAAA Silent p.A63A 0.15 TCGA-77-A5G3-01 4 77038903 77038903 G C NUP54 Missense_Mutation p.Q437E 0.12 deleterious(0) probably_damaging(0.95) TCGA-77-A5G3-01 4 77660229 77660229 G A SHROOM3 Silent p.Q301Q 0.11 TCGA-77-A5G3-01 4 79393366 79393366 G T FRAS1 Silent p.L2468L 0.18 TCGA-77-A5G3-01 4 83280667 83280667 C - HNRNPD Frame_Shift_Del p.G139Vfs*13 0.33 TCGA-77-A5G3-01 4 83996537 83996537 C G COPS4 Missense_Mutation p.A392G 0.13 tolerated(0.47) benign(0.045) TCGA-77-A5G3-01 4 91549300 91549300 G A CCSER1 Missense_Mutation p.D617N 0.28 deleterious(0) probably_damaging(0.998) TCGA-77-A5G3-01 4 94006304 94006304 C A GRID2 Silent p.R135R 0.49 TCGA-77-A5G3-01 4 96761628 96761628 G A PDHA2 Silent p.S109S 0.21 TCGA-77-A5G3-01 5 114860415 114860415 T A FEM1C Missense_Mutation p.N482Y 0.33 deleterious(0) possibly_damaging(0.612) TCGA-77-A5G3-01 5 131302204 131302204 C T ACSL6 Missense_Mutation p.V540M 0.19 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 5 134782366 134782366 T A C5orf20 Missense_Mutation p.T145S 0.27 tolerated_low_confidence(0.47) possibly_damaging(0.486) TCGA-77-A5G3-01 5 137056243 137056243 C A KLHL3 Missense_Mutation p.Q15H 0.29 deleterious_low_confidence(0.03) benign(0.212) TCGA-77-A5G3-01 5 13788947 13788947 C A DNAH5 Missense_Mutation p.W2842L 0.16 benign(0.307) TCGA-77-A5G3-01 5 13792232 13792232 T G DNAH5 Silent p.L2773L 0.17 TCGA-77-A5G3-01 5 13817722 13817722 G C DNAH5 Missense_Mutation p.A2308G 0.10 possibly_damaging(0.694) TCGA-77-A5G3-01 5 13830220 13830220 C A DNAH5 Missense_Mutation p.C2055F 0.10 possibly_damaging(0.639) TCGA-77-A5G3-01 5 139917046 139917046 C A ANKHD1 Missense_Mutation p.P2367Q 0.21 probably_damaging(0.998) TCGA-77-A5G3-01 5 140076149 140076149 G T HARS2 Missense_Mutation p.G259V 0.32 deleterious(0) probably_damaging(0.913) TCGA-77-A5G3-01 5 140230105 140230105 G A PCDHA9 Silent p.A675A 0.12 TCGA-77-A5G3-01 5 140249804 140249804 C A PCDHA11 Missense_Mutation p.S372R 0.31 deleterious_low_confidence(0.05) possibly_damaging(0.549) TCGA-77-A5G3-01 5 140256741 140256741 G A PCDHA12 Missense_Mutation p.A562T 0.16 deleterious_low_confidence(0.01) benign(0.314) TCGA-77-A5G3-01 5 140615632 140615632 C T PCDHB18 RNA 0.29 TCGA-77-A5G3-01 5 1406383 1406383 C A SLC6A3 Missense_Mutation p.D507Y 0.10 deleterious(0) probably_damaging(0.988) TCGA-77-A5G3-01 5 140710945 140710945 G T PCDHGA1 Missense_Mutation p.V232L 0.34 tolerated_low_confidence(0.06) benign(0.162) TCGA-77-A5G3-01 5 140724343 140724343 G A PCDHGA3 Missense_Mutation p.R248H 0.44 tolerated_low_confidence(0.41) benign(0.028) TCGA-77-A5G3-01 5 140724458 140724458 G A PCDHGA3 Silent p.G286G 0.37 TCGA-77-A5G3-01 5 140792747 140792747 C T PCDHGA10 Missense_Mutation p.A2V 0.32 deleterious_low_confidence(0.02) benign(0.029) TCGA-77-A5G3-01 5 140865725 140865725 G A PCDHGC4 Missense_Mutation p.A329T 0.19 tolerated(0.24) possibly_damaging(0.574) TCGA-77-A5G3-01 5 141059182 141059182 G A ARAP3 Missense_Mutation p.P210S 0.35 tolerated_low_confidence(0.19) benign(0.011) TCGA-77-A5G3-01 5 157159976 157159976 G A THG1L Missense_Mutation p.V98M 0.27 deleterious(0.02) benign(0.337) TCGA-77-A5G3-01 5 160721181 160721181 A T GABRB2 Silent p.T482T 0.33 TCGA-77-A5G3-01 5 162939158 162939158 C T MAT2B Silent p.L72L 0.14 TCGA-77-A5G3-01 5 23522985 23522985 C A PRDM9 Nonsense_Mutation p.Y291* 0.27 TCGA-77-A5G3-01 5 24498511 24498511 C A CDH10 Missense_Mutation p.G504V 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-77-A5G3-01 5 24498523 24498523 T - CDH10 Frame_Shift_Del p.N500Mfs*7 0.16 TCGA-77-A5G3-01 5 33643515 33643515 C A ADAMTS12 Missense_Mutation p.A514S 0.05 deleterious(0.01) probably_damaging(0.953) TCGA-77-A5G3-01 5 34007968 34007968 G T AMACR Missense_Mutation p.L53I 0.20 tolerated(1) benign(0.008) TCGA-77-A5G3-01 5 34020830 34020830 T A C1QTNF3 Missense_Mutation p.K273I 0.15 deleterious(0.02) probably_damaging(0.939) TCGA-77-A5G3-01 5 36976417 36976417 G C NIPBL Missense_Mutation p.E470Q 0.11 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-77-A5G3-01 5 36995885 36995885 G T NIPBL Missense_Mutation p.D1095Y 0.24 deleterious_low_confidence(0) benign(0.008) TCGA-77-A5G3-01 5 38445757 38445757 C T EGFLAM Intron 0.13 TCGA-77-A5G3-01 5 38445759 38445759 C T EGFLAM Intron 0.13 TCGA-77-A5G3-01 5 38445763 38445763 C T EGFLAM Intron 0.13 TCGA-77-A5G3-01 5 40972584 40972584 G T C7 Missense_Mutation p.K654N 0.20 deleterious(0.01) possibly_damaging(0.77) TCGA-77-A5G3-01 5 45303715 45303715 C G HCN1 Missense_Mutation p.G535A 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-77-A5G3-01 5 5209312 5209312 T A ADAMTS16 Missense_Mutation p.W520R 0.12 deleterious(0) probably_damaging(0.996) TCGA-77-A5G3-01 5 63256401 63256401 G A HTR1A Silent p.G382G 0.17 TCGA-77-A5G3-01 5 6607310 6607310 T A NSUN2 Intron 0.23 TCGA-77-A5G3-01 5 79855178 79855178 C A ANKRD34B Missense_Mutation p.D221Y 0.22 deleterious(0.01) possibly_damaging(0.51) TCGA-77-A5G3-01 6 101054965 101054965 C G ASCC3 Splice_Site p.X1596_splice 0.19 TCGA-77-A5G3-01 6 102074288 102074288 T C GRIK2 Missense_Mutation p.I106T 0.24 deleterious(0) possibly_damaging(0.788) TCGA-77-A5G3-01 6 118588247 118588247 C T SLC35F1 Silent p.I189I 0.12 TCGA-77-A5G3-01 6 121625932 121625932 T A TBC1D32 Missense_Mutation p.L246F 0.27 tolerated(0.36) benign(0.073) TCGA-77-A5G3-01 6 132030011 132030011 C T CTAGE9 Missense_Mutation p.R716K 0.13 deleterious(0) possibly_damaging(0.839) TCGA-77-A5G3-01 6 136599104 136599104 G T BCLAF1 Silent p.I305I 0.11 TCGA-77-A5G3-01 6 146480672 146480672 C G GRM1 Missense_Mutation p.R297G 0.11 deleterious(0) possibly_damaging(0.878) TCGA-77-A5G3-01 6 15511579 15511579 C T JARID2 Silent p.L967L 0.40 TCGA-77-A5G3-01 6 160461662 160461662 G A IGF2R Silent p.T462T 0.22 TCGA-77-A5G3-01 6 160679444 160679444 G A SLC22A2 Missense_Mutation p.R116C 0.19 tolerated(0.05) possibly_damaging(0.738) TCGA-77-A5G3-01 6 161137749 161137749 C A PLG Silent p.T247T 0.19 TCGA-77-A5G3-01 6 161969981 161969981 C A PARK2 Missense_Mutation p.V330L 0.24 tolerated(0.28) possibly_damaging(0.718) TCGA-77-A5G3-01 6 168467455 168467455 C T FRMD1 Silent p.V147V 0.23 TCGA-77-A5G3-01 6 168475998 168475998 G A FRMD1 Silent p.R77R 0.29 TCGA-77-A5G3-01 6 25600716 25600716 A T LRRC16A Silent p.A1098A 0.35 TCGA-77-A5G3-01 6 25773877 25773877 C A SLC17A4 Nonsense_Mutation p.S321* 0.35 TCGA-77-A5G3-01 6 26285575 26285575 G C HIST1H4H Missense_Mutation p.I51M 0.13 deleterious(0) probably_damaging(0.941) TCGA-77-A5G3-01 6 26452476 26452476 C T BTN3A3 Missense_Mutation p.S531F 0.09 deleterious(0.03) possibly_damaging(0.548) TCGA-77-A5G3-01 6 29797303 29797303 G - HLA-G Frame_Shift_Del p.D244Mfs*53 0.23 TCGA-77-A5G3-01 6 30459347 30459347 G T HLA-E Missense_Mutation p.G307V 0.33 deleterious_low_confidence(0.03) benign(0.016) TCGA-77-A5G3-01 6 30863243 30863243 G T DDR1 Missense_Mutation p.G526C 0.13 tolerated(0.06) possibly_damaging(0.843) TCGA-77-A5G3-01 6 31936158 31936158 T C SKIV2L Missense_Mutation p.L971P 0.42 deleterious(0.01) probably_damaging(0.98) TCGA-77-A5G3-01 6 35773848 35773848 A T LHFPL5 Missense_Mutation p.Q134L 0.48 deleterious(0.03) possibly_damaging(0.601) TCGA-77-A5G3-01 6 41196486 41196486 G T TREML4 Missense_Mutation p.G33V 0.30 deleterious(0) probably_damaging(0.999) TCGA-77-A5G3-01 6 42931152 42931152 G T GNMT Silent p.V227V 0.43 TCGA-77-A5G3-01 6 43111313 43111313 C G PTK7 Missense_Mutation p.Q744E 0.32 tolerated(0.18) benign(0.206) TCGA-77-A5G3-01 6 43591770 43591770 C T GTPBP2 Missense_Mutation p.G379E 0.10 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 6 43593236 43593236 C G GTPBP2 Missense_Mutation p.G190A 0.07 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 6 52993022 52993022 G T GCM1 Missense_Mutation p.N431K 0.28 deleterious(0.02) benign(0.057) TCGA-77-A5G3-01 6 55638888 55638888 G C BMP5 Missense_Mutation p.S329C 0.20 deleterious(0.01) possibly_damaging(0.76) TCGA-77-A5G3-01 6 66204626 66204626 G C EYS Silent p.G226G 0.12 TCGA-77-A5G3-01 6 66205285 66205285 C A EYS Missense_Mutation p.V7F 0.13 deleterious_low_confidence(0.03) benign(0.012) TCGA-77-A5G3-01 6 69666662 69666662 G T BAI3 Missense_Mutation p.G496C 0.25 deleterious(0.03) probably_damaging(1) TCGA-77-A5G3-01 6 7247443 7247443 G T RREB1 Missense_Mutation p.R1587L 0.32 tolerated(0.21) probably_damaging(0.99) TCGA-77-A5G3-01 6 76572384 76572384 G C MYO6 Missense_Mutation p.D540H 0.29 tolerated(0.54) unknown(0) TCGA-77-A5G3-01 6 78173111 78173111 G A HTR1B Missense_Mutation p.P4S 0.21 tolerated_low_confidence(0.89) benign(0.002) TCGA-77-A5G3-01 6 84303405 84303405 A G SNAP91 Silent p.F496F 0.29 TCGA-77-A5G3-01 6 85447084 85447084 G A TBX18 Silent p.G381G 0.27 TCGA-77-A5G3-01 6 88775920 88775920 G A SPACA1 Nonsense_Mutation p.W251* 0.15 TCGA-77-A5G3-01 7 100238495 100238495 G A TFR2 Missense_Mutation p.A96V 0.13 deleterious(0.01) probably_damaging(0.962) TCGA-77-A5G3-01 7 100675097 100675097 G A MUC17 Missense_Mutation p.E134K 0.09 benign(0.004) TCGA-77-A5G3-01 7 100675884 100675884 C A MUC17 Missense_Mutation p.T396K 0.11 probably_damaging(0.95) TCGA-77-A5G3-01 7 100852202 100852202 C A PLOD3 Nonsense_Mutation p.E574* 0.14 TCGA-77-A5G3-01 7 103143616 103143616 G C RELN Missense_Mutation p.S2779C 0.11 deleterious(0) probably_damaging(0.994) TCGA-77-A5G3-01 7 107315542 107315542 C T SLC26A4 Silent p.L251L 0.08 TCGA-77-A5G3-01 7 111634208 111634208 C A DOCK4 Missense_Mutation p.M99I 0.18 tolerated(0.94) benign(0.002) TCGA-77-A5G3-01 7 112424584 112424584 A C TMEM168 Missense_Mutation p.F99L 0.07 tolerated(0.21) possibly_damaging(0.554) TCGA-77-A5G3-01 7 11485695 11485695 G T THSD7A Missense_Mutation p.N1019K 0.20 deleterious(0.01) benign(0.269) TCGA-77-A5G3-01 7 11676332 11676332 C A THSD7A Silent p.G149G 0.17 TCGA-77-A5G3-01 7 121942021 121942021 G T FEZF1 3'UTR 0.15 TCGA-77-A5G3-01 7 126173007 126173007 T A GRM8 Missense_Mutation p.K810M 0.27 deleterious(0) possibly_damaging(0.744) TCGA-77-A5G3-01 7 127253906 127253906 G A PAX4 Missense_Mutation p.H148Y 0.19 tolerated(0.09) benign(0.006) TCGA-77-A5G3-01 7 131848976 131848976 G A PLXNA4 Silent p.D1475D 0.18 TCGA-77-A5G3-01 7 134879761 134879761 G T WDR91 Silent p.I440I 0.20 TCGA-77-A5G3-01 7 138430003 138430003 C T ATP6V0A4 Missense_Mutation p.G448E 0.18 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 7 140453155 140453155 C T BRAF Missense_Mutation p.D594N 0.08 deleterious(0) possibly_damaging(0.803) TCGA-77-A5G3-01 7 142045610 142045610 G C TRBV4-2 Silent p.L46L 0.06 TCGA-77-A5G3-01 7 142378889 142378889 T A MTRNR2L6 3'Flank 0.09 TCGA-77-A5G3-01 7 142478867 142478867 G T PRSS3P2 RNA 0.39 TCGA-77-A5G3-01 7 143792907 143792907 C A OR2A12 Missense_Mutation p.A236D 0.08 deleterious(0) probably_damaging(0.998) TCGA-77-A5G3-01 7 144015328 144015328 C G OR2A1 Silent p.T37T 0.15 TCGA-77-A5G3-01 7 147183036 147183036 C G CNTNAP2 Silent p.P560P 0.12 TCGA-77-A5G3-01 7 147336316 147336316 A G CNTNAP2 Missense_Mutation p.I672M 0.28 tolerated(0.07) benign(0.01) TCGA-77-A5G3-01 7 149983594 149983594 C T ACTR3C Silent p.K111K 0.17 TCGA-77-A5G3-01 7 150390078 150390078 G C GIMAP2 Missense_Mutation p.R235T 0.23 tolerated(0.07) benign(0.021) TCGA-77-A5G3-01 7 150439476 150439476 G A GIMAP5 Silent p.T83T 0.17 TCGA-77-A5G3-01 7 150489193 150489193 G A TMEM176B Missense_Mutation p.S224F 0.11 deleterious(0.02) probably_damaging(1) TCGA-77-A5G3-01 7 151859642 151859642 C A KMT2C Missense_Mutation p.G3674C 0.09 possibly_damaging(0.572) TCGA-77-A5G3-01 7 151970814 151970814 G C KMT2C Missense_Mutation p.H330D 0.04 probably_damaging(0.999) TCGA-77-A5G3-01 7 152522198 152522198 G T ACTR3B Silent p.P314P 0.12 TCGA-77-A5G3-01 7 154684243 154684243 G A DPP6 3'UTR 0.26 TCGA-77-A5G3-01 7 19184622 19184622 C A FERD3L Missense_Mutation p.D122Y 0.11 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 7 27135357 27135357 C - HOXA1 Frame_Shift_Del p.V59Cfs*55 0.23 TCGA-77-A5G3-01 7 31692550 31692550 A T CCDC129 Intron 0.25 TCGA-77-A5G3-01 7 31904576 31904576 G A PDE1C Missense_Mutation p.L304F 0.23 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 7 32109908 32109908 C G PDE1C Intron 0.15 TCGA-77-A5G3-01 7 34698014 34698014 C A NPSR1 5'UTR 0.26 TCGA-77-A5G3-01 7 37780488 37780488 C A GPR141 Missense_Mutation p.H165N 0.19 tolerated(0.49) benign(0.006) TCGA-77-A5G3-01 7 40172820 40172820 A G MPLKIP Silent p.R126R 0.18 TCGA-77-A5G3-01 7 48068475 48068475 C A SUN3 Missense_Mutation p.A21S 0.22 deleterious_low_confidence(0.04) benign(0.065) TCGA-77-A5G3-01 7 48375043 48375043 G A ABCA13 Missense_Mutation p.D3342N 0.08 benign(0.393) TCGA-77-A5G3-01 7 53104265 53104265 C A POM121L12 3'UTR 0.21 TCGA-77-A5G3-01 7 5568281 5568281 A G ACTB Missense_Mutation p.S145P 0.20 deleterious_low_confidence(0.02) probably_damaging(0.99) TCGA-77-A5G3-01 7 57522853 57522853 G T ZNF716 Nonsense_Mutation p.E81* 0.18 TCGA-77-A5G3-01 7 64864773 64864773 G T ZNF92 Missense_Mutation p.E582D 0.08 deleterious(0) benign(0) TCGA-77-A5G3-01 7 66304898 66304898 T A GTF2IRD1P1 RNA 0.26 TCGA-77-A5G3-01 7 6805339 6805339 C G RSPH10B2 Silent p.G192G 0.20 TCGA-77-A5G3-01 7 71130409 71130409 G T WBSCR17 Missense_Mutation p.G365V 0.24 deleterious(0) probably_damaging(0.998) TCGA-77-A5G3-01 7 71743749 71743749 C A CALN1 Missense_Mutation p.G56W 0.18 deleterious(0) probably_damaging(0.992) TCGA-77-A5G3-01 7 72281165 72281165 C T TYW1B Nonsense_Mutation p.W108* 0.13 TCGA-77-A5G3-01 7 7472330 7472330 C T COL28A1 Missense_Mutation p.G621D 0.07 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 7 87145908 87145908 C T ABCB1 Missense_Mutation p.A1001T 0.20 deleterious(0) probably_damaging(0.944) TCGA-77-A5G3-01 7 88423606 88423606 C A C7orf62 Missense_Mutation p.L217F 0.19 deleterious(0) probably_damaging(0.966) TCGA-77-A5G3-01 7 88964056 88964056 C G ZNF804B Missense_Mutation p.S587C 0.06 deleterious(0) possibly_damaging(0.705) TCGA-77-A5G3-01 7 90675233 90675233 G A CDK14 Missense_Mutation p.D337N 0.29 tolerated(0.05) benign(0.016) TCGA-77-A5G3-01 7 94164653 94164653 A T CASD1 Missense_Mutation p.R221W 0.08 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 7 94178846 94178846 G A CASD1 Missense_Mutation p.G572D 0.09 tolerated(0.48) benign(0.015) TCGA-77-A5G3-01 7 94293249 94293249 C A PEG10 Silent p.G127G 0.16 TCGA-77-A5G3-01 7 94293250 94293250 C A PEG10 Missense_Mutation p.R128S 0.15 tolerated(0.33) benign(0.135) TCGA-77-A5G3-01 7 94991763 94991763 C A PON3 Missense_Mutation p.D273Y 0.15 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 7 99084917 99084917 A T ZNF789 Missense_Mutation p.I362F 0.21 deleterious(0.01) possibly_damaging(0.908) TCGA-77-A5G3-01 8 104078622 104078622 G C ATP6V1C1 Missense_Mutation p.V334L 0.16 tolerated(0.15) probably_damaging(0.997) TCGA-77-A5G3-01 8 105361566 105361566 G C DCSTAMP Missense_Mutation p.Q262H 0.08 deleterious(0.03) benign(0.111) TCGA-77-A5G3-01 8 113569024 113569024 C A CSMD3 Missense_Mutation p.R1401M 0.27 deleterious(0.01) probably_damaging(0.992) TCGA-77-A5G3-01 8 113933952 113933952 C A CSMD3 Missense_Mutation p.D513Y 0.28 deleterious(0) probably_damaging(0.951) TCGA-77-A5G3-01 8 11831501 11831501 C A DEFB136 Missense_Mutation p.C61F 0.09 deleterious(0) probably_damaging(0.955) TCGA-77-A5G3-01 8 121705932 121705932 C T SNTB1 Missense_Mutation p.R263K 0.09 deleterious(0.02) possibly_damaging(0.53) TCGA-77-A5G3-01 8 133187845 133187845 G A KCNQ3 Missense_Mutation p.T263M 0.15 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 8 133627332 133627332 G C LRRC6 Missense_Mutation p.S309C 0.10 deleterious(0.02) benign(0.029) TCGA-77-A5G3-01 8 133829195 133829195 C T PHF20L1 Nonsense_Mutation p.Q416* 0.19 TCGA-77-A5G3-01 8 139165397 139165397 G A FAM135B Silent p.L441L 0.10 TCGA-77-A5G3-01 8 139636011 139636011 C T COL22A1 Silent p.E1245E 0.11 TCGA-77-A5G3-01 8 139839018 139839018 C A COL22A1 Silent p.V284V 0.22 TCGA-77-A5G3-01 8 145001434 145001434 T A PLEC Missense_Mutation p.I1413F 0.16 unknown(0) TCGA-77-A5G3-01 8 145140829 145140829 C T GPAA1 Missense_Mutation p.T556M 0.17 tolerated(0.14) benign(0.009) TCGA-77-A5G3-01 8 145582863 145582863 C T SLC52A2 5'UTR 0.17 TCGA-77-A5G3-01 8 145603131 145603131 C T ADCK5 Missense_Mutation p.P23L 0.12 tolerated_low_confidence(0.77) benign(0.001) TCGA-77-A5G3-01 8 145694120 145694120 G T KIFC2 Missense_Mutation p.R339L 0.12 deleterious(0.04) possibly_damaging(0.723) TCGA-77-A5G3-01 8 145699781 145699782 - C FOXH1 Frame_Shift_Ins p.V313Gfs*4 0.14 TCGA-77-A5G3-01 8 1497583 1497583 C G DLGAP2 Missense_Mutation p.P242A 0.10 tolerated(0.28) benign(0.012) TCGA-77-A5G3-01 8 26237501 26237501 C G BNIP3L 5'Flank 0.13 TCGA-77-A5G3-01 8 26238090 26238090 C T BNIP3L 5'Flank 0.25 TCGA-77-A5G3-01 8 26238284 26238284 C G BNIP3L 5'Flank 0.09 TCGA-77-A5G3-01 8 3165906 3165906 G C CSMD1 Missense_Mutation p.H1251D 0.12 benign(0.096) TCGA-77-A5G3-01 8 3263738 3263738 C A CSMD1 Missense_Mutation p.G693C 0.25 probably_damaging(1) TCGA-77-A5G3-01 8 37756978 37756978 G C RAB11FIP1 5'Flank 0.06 TCGA-77-A5G3-01 8 37914630 37914630 G C EIF4EBP1 Silent p.L59L 0.07 TCGA-77-A5G3-01 8 38835487 38835487 C A HTRA4 Missense_Mutation p.L263M 0.16 deleterious(0.03) probably_damaging(1) TCGA-77-A5G3-01 8 40554909 40554909 G T ZMAT4 Silent p.A68A 0.17 TCGA-77-A5G3-01 8 49986794 49986794 G A C8orf22 Silent p.G45G 0.21 TCGA-77-A5G3-01 8 53062405 53062405 T A ST18 Missense_Mutation p.T647S 0.12 tolerated(0.59) benign(0.37) TCGA-77-A5G3-01 8 56015484 56015484 G T XKR4 Missense_Mutation p.G146W 0.14 deleterious(0) probably_damaging(0.999) TCGA-77-A5G3-01 8 66637041 66637041 C G PDE7A Missense_Mutation p.D346H 0.12 deleterious(0.03) possibly_damaging(0.535) TCGA-77-A5G3-01 8 72966050 72966050 G T TRPA1 Missense_Mutation p.Q528K 0.21 tolerated(0.22) possibly_damaging(0.527) TCGA-77-A5G3-01 8 73479938 73479938 G T KCNB2 5'UTR 0.16 TCGA-77-A5G3-01 8 73848707 73848707 T G KCNB2 Missense_Mutation p.W373G 0.31 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 8 77618753 77618753 C T ZFHX4 Silent p.H810H 0.15 TCGA-77-A5G3-01 8 77763308 77763308 G A ZFHX4 Missense_Mutation p.R1384K 0.25 benign(0.14) TCGA-77-A5G3-01 8 85097208 85097208 C A RALYL 5'UTR 0.09 TCGA-77-A5G3-01 8 87591438 87591438 C A CNGB3 Silent p.V608V 0.16 TCGA-77-A5G3-01 8 88885209 88885209 C A DCAF4L2 Missense_Mutation p.A331S 0.24 deleterious(0.04) possibly_damaging(0.615) TCGA-77-A5G3-01 8 99591965 99591965 G A STK3 Missense_Mutation p.T320I 0.06 tolerated(0.19) benign(0.017) TCGA-77-A5G3-01 9 104449351 104449351 G T GRIN3A Silent p.T277T 0.19 TCGA-77-A5G3-01 9 114305191 114305191 G T ZNF483 Missense_Mutation p.G659V 0.07 deleterious(0) probably_damaging(0.991) TCGA-77-A5G3-01 9 114905859 114905859 G A SUSD1 Nonsense_Mutation p.R140* 0.39 TCGA-77-A5G3-01 9 119625871 119625871 C A ASTN2 Silent p.S626S 0.09 TCGA-77-A5G3-01 9 121929484 121929484 A T BRINP1 Missense_Mutation p.C722S 0.11 deleterious(0) possibly_damaging(0.879) TCGA-77-A5G3-01 9 124979416 124979416 C A LHX6 Nonsense_Mutation p.E205* 0.32 TCGA-77-A5G3-01 9 125486748 125486748 C G OR1L4 Silent p.R160R 0.25 TCGA-77-A5G3-01 9 130566794 130566794 G A FPGS Missense_Mutation p.R95Q 0.23 tolerated(1) benign(0.009) TCGA-77-A5G3-01 9 134090650 134090650 G T NUP214 Missense_Mutation p.G1882W 0.35 probably_damaging(0.979) TCGA-77-A5G3-01 9 135554229 135554229 A T GTF3C4 Missense_Mutation p.K408I 0.41 deleterious(0.03) probably_damaging(0.994) TCGA-77-A5G3-01 9 137623422 137623422 C G COL5A1 Missense_Mutation p.N415K 0.07 possibly_damaging(0.53) TCGA-77-A5G3-01 9 138376605 138376605 G T PPP1R26 Silent p.P83P 0.32 TCGA-77-A5G3-01 9 140135798 140135798 G T TUBB4B 5'UTR 0.47 TCGA-77-A5G3-01 9 140508833 140508833 G A ARRDC1 Missense_Mutation p.R234Q 0.07 deleterious(0.02) benign(0.047) TCGA-77-A5G3-01 9 14776137 14776137 C A FREM1 Missense_Mutation p.D1503Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-77-A5G3-01 9 21216963 21216963 C G IFNA16 Missense_Mutation p.Q114H 0.50 deleterious(0.02) possibly_damaging(0.461) TCGA-77-A5G3-01 9 21971096 21971096 C A CDKN2A Nonsense_Mutation p.E88* 0.57 TCGA-77-A5G3-01 9 286564 286564 C T DOCK8 Missense_Mutation p.T87I 0.47 deleterious(0) benign(0.143) TCGA-77-A5G3-01 9 33116007 33116009 TCT - B4GALT1 In_Frame_Del p.E313del 0.28 TCGA-77-A5G3-01 9 33933602 33933602 G A UBAP2 Missense_Mutation p.S665F 0.09 deleterious(0.01) probably_damaging(0.959) TCGA-77-A5G3-01 9 35697661 35697661 C A TLN1 3'UTR 0.33 TCGA-77-A5G3-01 9 35697662 35697662 C A TLN1 3'UTR 0.31 TCGA-77-A5G3-01 9 35825250 35825250 G T FAM221B Missense_Mutation p.A240E 0.30 deleterious(0) probably_damaging(0.948) TCGA-77-A5G3-01 9 35842415 35842415 G T TMEM8B 5'UTR 0.25 TCGA-77-A5G3-01 9 43625241 43625241 G C SPATA31A6 Nonsense_Mutation p.S1149* 0.17 TCGA-77-A5G3-01 9 72897390 72897390 G A SMC5 Missense_Mutation p.R291Q 0.14 tolerated(1) benign(0.003) TCGA-77-A5G3-01 9 79324925 79324925 G T PRUNE2 Silent p.P755P 0.16 TCGA-77-A5G3-01 9 84605951 84605951 G T SPATA31D1 Missense_Mutation p.R189L 0.24 tolerated(0.73) benign(0.003) TCGA-77-A5G3-01 9 95599571 95599571 G C ANKRD19P RNA 0.26 TCGA-77-A5G3-01 9 95887189 95887189 C T NINJ1 3'UTR 0.09 TCGA-77-A5G3-01 9 96289460 96289460 G T FAM120A Missense_Mutation p.G481V 0.44 deleterious(0.04) benign(0.156) TCGA-77-A5G3-01 X 10153183 10153183 G A CLCN4 Silent p.R37R 0.29 TCGA-77-A5G3-01 X 117960432 117960432 T G ZCCHC12 3'UTR 0.25 TCGA-77-A5G3-01 X 118222075 118222075 C A KIAA1210 Missense_Mutation p.V1040F 0.28 deleterious(0.01) probably_damaging(0.967) TCGA-77-A5G3-01 X 118284465 118284465 A T KIAA1210 Silent p.A26A 0.56 TCGA-77-A5G3-01 X 119211020 119211020 C G RHOXF2B Missense_Mutation p.E105Q 0.19 tolerated(0.12) benign(0.007) TCGA-77-A5G3-01 X 119249414 119249414 C T RHOXF1 Missense_Mutation p.S120N 0.43 tolerated(0.24) benign(0.049) TCGA-77-A5G3-01 X 120009384 120009384 A C CT47B1 Silent p.P47P 0.43 TCGA-77-A5G3-01 X 125685527 125685527 C A DCAF12L1 Silent p.S355S 0.34 TCGA-77-A5G3-01 X 128873217 128873217 C A XPNPEP2 Missense_Mutation p.P10T 0.41 tolerated_low_confidence(0.3) benign(0.008) TCGA-77-A5G3-01 X 12938111 12938111 C G TLR8 Missense_Mutation p.L318V 0.42 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 X 130220013 130220013 T A ARHGAP36 Missense_Mutation p.S411T 0.47 tolerated(0.05) probably_damaging(0.993) TCGA-77-A5G3-01 X 130420436 130420436 C T IGSF1 Silent p.R24R 0.35 TCGA-77-A5G3-01 X 1331481 1331481 C T CRLF2 Missense_Mutation p.G16E 0.17 tolerated(0.31) benign(0.134) TCGA-77-A5G3-01 X 134989937 134989937 G T SAGE1 Missense_Mutation p.V366F 0.38 deleterious(0.02) possibly_damaging(0.904) TCGA-77-A5G3-01 X 135323332 135323332 A G MAP7D3 Silent p.S174S 0.26 TCGA-77-A5G3-01 X 135584970 135584970 G T HTATSF1 Missense_Mutation p.D202Y 0.42 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 X 144904204 144904204 C T SLITRK2 Silent p.N87N 0.32 TCGA-77-A5G3-01 X 151393241 151393242 - A GABRA3 Frame_Shift_Ins p.G210Wfs*9 0.31 TCGA-77-A5G3-01 X 151870141 151870141 C A MAGEA6 Silent p.A277A 0.44 TCGA-77-A5G3-01 X 152807377 152807377 C G ATP2B3 Silent p.V219V 0.22 TCGA-77-A5G3-01 X 153039363 153039363 G T PLXNB3 Missense_Mutation p.S1133I 0.42 deleterious(0) probably_damaging(0.988) TCGA-77-A5G3-01 X 15560149 15560149 C G BMX Nonsense_Mutation p.S480* 0.17 TCGA-77-A5G3-01 X 2609900 2609900 C T CD99 Intron 0.18 TCGA-77-A5G3-01 X 26211944 26211944 T A MAGEB6 5'UTR 0.17 TCGA-77-A5G3-01 X 2773119 2773119 G T GYG2 Missense_Mutation p.G168V 0.21 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 X 27840107 27840107 C A MAGEB10 Missense_Mutation p.N228K 0.62 deleterious(0.01) probably_damaging(0.982) TCGA-77-A5G3-01 X 29301307 29301307 A G IL1RAPL1 Missense_Mutation p.D112G 0.48 deleterious(0) probably_damaging(0.989) TCGA-77-A5G3-01 X 29973625 29973625 C T IL1RAPL1 Silent p.A593A 0.26 TCGA-77-A5G3-01 X 31496394 31496394 G A DMD Silent p.S2922S 0.42 TCGA-77-A5G3-01 X 36156561 36156561 G A CHDC2 Missense_Mutation p.D414N 0.34 tolerated(0.21) benign(0.288) TCGA-77-A5G3-01 X 41204766 41204766 A C DDX3X Missense_Mutation p.K427T 0.43 deleterious(0) probably_damaging(1) TCGA-77-A5G3-01 X 47424386 47424386 A G ARAF Silent p.V102V 0.49 TCGA-77-A5G3-01 X 47836813 47836813 G A ZNF182 Nonsense_Mutation p.Q225* 0.39 TCGA-77-A5G3-01 X 47837137 47837137 G T ZNF182 Missense_Mutation p.L117M 0.33 tolerated(0.24) benign(0.201) TCGA-77-A5G3-01 X 47919924 47919924 C G ZNF630 Missense_Mutation p.G48A 0.23 deleterious(0) probably_damaging(0.999) TCGA-77-A5G3-01 X 57458392 57458392 A T FAAH2 Missense_Mutation p.Q346H 0.27 deleterious(0.02) benign(0.287) TCGA-77-A5G3-01 X 63488558 63488558 C A MTMR8 Missense_Mutation p.M658I 0.61 tolerated_low_confidence(0.05) benign(0.003) TCGA-77-A5G3-01 X 73046179 73046179 G C XIST RNA 0.48 TCGA-77-A5G3-01 X 73811245 73811245 C G RLIM 3'UTR 0.44 TCGA-77-A5G3-01 X 78010653 78010653 T C LPAR4 Missense_Mutation p.I96T 0.32 deleterious(0.03) possibly_damaging(0.531) TCGA-77-A5G3-01 X 79939582 79939582 G A BRWD3 Missense_Mutation p.P1387L 0.53 deleterious(0) probably_damaging(0.99) TCGA-77-A5G3-01 X 84510471 84510471 G T ZNF711 Missense_Mutation p.A96S 0.42 tolerated(0.94) benign(0.062) TCGA-77-A5G3-01 X 86888832 86888832 C T KLHL4 Missense_Mutation p.P545S 0.12 deleterious(0.02) possibly_damaging(0.686) TCGA-77-A5G3-01 X 89177224 89177224 C T TGIF2LX Missense_Mutation p.P47L 0.39 tolerated(0.52) possibly_damaging(0.559) TCGA-77-A5G6-01 10 101611257 101611257 A T ABCC2 Splice_Site p.X1503_splice 0.46 TCGA-77-A5G6-01 10 105315169 105315169 C A NEURL1 Intron 0.23 TCGA-77-A5G6-01 10 115356903 115356903 G T NRAP Missense_Mutation p.T1458K 0.21 tolerated(0.56) benign(0.24) TCGA-77-A5G6-01 10 124380866 124380866 C A DMBT1 Missense_Mutation p.H1731N 0.47 deleterious(0) probably_damaging(0.999) TCGA-77-A5G6-01 10 16960757 16960757 C T CUBN Silent p.S2288S 0.55 TCGA-77-A5G6-01 10 26581417 26581417 T C GAD2 Silent p.H470H 0.20 TCGA-77-A5G6-01 10 26789999 26789999 G T APBB1IP Missense_Mutation p.D138Y 0.61 deleterious(0.01) possibly_damaging(0.885) TCGA-77-A5G6-01 10 26855912 26855912 A T APBB1IP Missense_Mutation p.N499I 0.37 tolerated(0.07) benign(0.007) TCGA-77-A5G6-01 10 31815882 31815882 C A ZEB1 Nonsense_Mutation p.S1023* 0.26 TCGA-77-A5G6-01 10 35929669 35929669 G A FZD8 Missense_Mutation p.P230L 0.25 tolerated(0.13) benign(0.25) TCGA-77-A5G6-01 10 46121569 46121569 T A ZFAND4 Missense_Mutation p.S568C 0.23 deleterious(0) possibly_damaging(0.502) TCGA-77-A5G6-01 10 51472581 51472581 G C AGAP7 Missense_Mutation p.I133M 0.20 tolerated_low_confidence(0.08) benign(0.001) TCGA-77-A5G6-01 10 55955445 55955445 C T PCDH15 Missense_Mutation p.D435N 0.51 tolerated(0.05) benign(0.326) TCGA-77-A5G6-01 10 61830376 61830376 T A ANK3 Missense_Mutation p.Q3421H 0.56 probably_damaging(0.969) TCGA-77-A5G6-01 10 63699999 63699999 T G ARID5B Missense_Mutation p.W112G 0.18 deleterious(0) possibly_damaging(0.84) TCGA-77-A5G6-01 10 68687337 68687337 C A LRRTM3 Missense_Mutation p.N221K 0.23 deleterious(0) probably_damaging(0.997) TCGA-77-A5G6-01 10 73539164 73539164 C A CDH23 Missense_Mutation p.N1781K 0.47 deleterious(0.02) probably_damaging(0.919) TCGA-77-A5G6-01 10 82111656 82111656 C G DYDC1 Splice_Site p.X83_splice 0.22 TCGA-77-A5G6-01 10 82111657 82111657 C A DYDC1 Missense_Mutation p.Q83H 0.22 deleterious(0) probably_damaging(0.94) TCGA-77-A5G6-01 10 84745452 84745452 A T NRG3 3'Flank 0.31 TCGA-77-A5G6-01 10 88428473 88428473 G A LDB3 Missense_Mutation p.G9R 0.45 deleterious(0) probably_damaging(1) TCGA-77-A5G6-01 10 88478506 88478506 A G LDB3 Missense_Mutation p.Q632R 0.22 deleterious(0) probably_damaging(0.954) TCGA-77-A5G6-01 10 89268224 89268224 G C MINPP1 Missense_Mutation p.E257Q 0.53 deleterious(0.02) probably_damaging(0.951) TCGA-77-A5G6-01 10 95848848 95848851 ATTA - PLCE1 Intron 0.26 TCGA-77-A5G6-01 10 96018620 96018620 C T PLCE1 Silent p.F1206F 0.30 TCGA-77-A5G6-01 10 96267061 96267061 G T TBC1D12 Silent p.R519R 0.23 TCGA-77-A5G6-01 10 98744490 98744490 G C C10orf12 Missense_Mutation p.A1115P 0.16 tolerated(0.14) benign(0.003) TCGA-77-A5G6-01 11 117074542 117074542 A T TAGLN Missense_Mutation p.S135C 0.34 deleterious(0.05) probably_damaging(0.955) TCGA-77-A5G6-01 11 118770686 118770686 C T BCL9L Missense_Mutation p.E1116K 0.20 probably_damaging(0.991) TCGA-77-A5G6-01 11 120690589 120690589 C G GRIK4 Missense_Mutation p.F157L 0.34 tolerated(0.42) probably_damaging(0.97) TCGA-77-A5G6-01 11 122650279 122650279 G C UBASH3B Silent p.S159S 0.22 TCGA-77-A5G6-01 11 123900388 123900388 C A OR10G8 Missense_Mutation p.A20E 0.26 tolerated(0.57) benign(0.001) TCGA-77-A5G6-01 11 124748587 124748587 C G ROBO3 Missense_Mutation p.S1143C 0.31 deleterious(0) probably_damaging(0.998) TCGA-77-A5G6-01 11 1262653 1262653 G A MUC5B Missense_Mutation p.E1515K 0.77 unknown(0) TCGA-77-A5G6-01 11 1278487 1278487 G C MUC5B Missense_Mutation p.G5419R 0.68 unknown(0) TCGA-77-A5G6-01 11 130106888 130106888 C - ZBTB44 Intron 0.18 TCGA-77-A5G6-01 11 134086840 134086840 T C NCAPD3 Silent p.L124L 0.93 TCGA-77-A5G6-01 11 14277228 14277228 C A SPON1 RNA 0.51 TCGA-77-A5G6-01 11 22261163 22261163 T A ANO5 Missense_Mutation p.Y271N 0.32 deleterious(0.03) benign(0.017) TCGA-77-A5G6-01 11 31816280 31816280 C T PAX6 Missense_Mutation p.G208R 0.43 tolerated(0.06) benign(0.002) TCGA-77-A5G6-01 11 4388719 4388719 G C OR52B4 Missense_Mutation p.H269Q 0.36 tolerated(0.14) benign(0.057) TCGA-77-A5G6-01 11 4389233 4389233 C T OR52B4 Missense_Mutation p.R98H 0.14 deleterious(0.02) benign(0.009) TCGA-77-A5G6-01 11 4471232 4471232 C G OR52K2 Missense_Mutation p.I221M 0.43 tolerated(0.09) possibly_damaging(0.467) TCGA-77-A5G6-01 11 4510578 4510578 G T OR52K1 Missense_Mutation p.A150S 0.38 tolerated(0.17) benign(0.103) TCGA-77-A5G6-01 11 4510623 4510623 C A OR52K1 Missense_Mutation p.L165I 0.41 tolerated(0.61) possibly_damaging(0.589) TCGA-77-A5G6-01 11 4869613 4869613 T A OR51S1 Missense_Mutation p.T276S 0.31 tolerated(0.84) benign(0.245) TCGA-77-A5G6-01 11 5173240 5173240 C A OR52A1 Missense_Mutation p.M120I 0.35 deleterious(0.01) benign(0.323) TCGA-77-A5G6-01 11 5221790 5221790 C A OR51V1 Silent p.V47V 0.27 TCGA-77-A5G6-01 11 5475081 5475081 C A OR51I2 Missense_Mutation p.D121E 0.35 deleterious(0) probably_damaging(0.996) TCGA-77-A5G6-01 11 5529060 5529060 G A UBQLN3 Missense_Mutation p.P577S 0.12 tolerated(0.29) benign(0.024) TCGA-77-A5G6-01 11 55890475 55890475 G T OR8H3 Silent p.V209V 0.41 TCGA-77-A5G6-01 11 58206936 58206936 T A OR5B12 Missense_Mutation p.E230V 0.45 deleterious_low_confidence(0.01) benign(0.162) TCGA-77-A5G6-01 11 59942877 59942877 C A MS4A6A Missense_Mutation p.A211S 0.26 deleterious(0.05) benign(0.228) TCGA-77-A5G6-01 11 60070155 60070155 T G MS4A4A Missense_Mutation p.S171A 0.14 tolerated(0.79) benign(0.102) TCGA-77-A5G6-01 11 60105306 60105313 TGCCTCAT - MS4A6E Frame_Shift_Del p.S82Vfs*2 0.25 TCGA-77-A5G6-01 11 6024334 6024334 G T OR56A4 Silent p.G15G 0.31 TCGA-77-A5G6-01 11 62288030 62288030 C A AHNAK Missense_Mutation p.G4620V 0.49 probably_damaging(1) TCGA-77-A5G6-01 11 62760838 62760838 G A SLC22A8 Intron 0.52 TCGA-77-A5G6-01 11 65810746 65810746 G T GAL3ST3 Silent p.P176P 0.50 TCGA-77-A5G6-01 11 66062642 66062642 G C TMEM151A Missense_Mutation p.A309P 0.56 deleterious(0) probably_damaging(0.999) TCGA-77-A5G6-01 11 66190213 66190213 G C NPAS4 Missense_Mutation p.V167L 0.22 deleterious(0.03) benign(0.374) TCGA-77-A5G6-01 11 68700805 68700805 G T IGHMBP2 Missense_Mutation p.R425L 0.50 deleterious(0) probably_damaging(0.998) TCGA-77-A5G6-01 11 68707206 68707206 G C IGHMBP2 3'UTR 0.20 TCGA-77-A5G6-01 11 7111275 7111275 C T RBMXL2 Silent p.Y308Y 0.09 TCGA-77-A5G6-01 11 71950852 71950852 C T PHOX2A Missense_Mutation p.G266R 0.50 tolerated_low_confidence(0.1) unknown(0) TCGA-77-A5G6-01 11 75623053 75623053 G C UVRAG Missense_Mutation p.R188P 0.51 deleterious(0.01) probably_damaging(0.979) TCGA-77-A5G6-01 11 85428572 85428572 A G SYTL2 Silent p.D861D 0.23 TCGA-77-A5G6-01 11 92577503 92577503 C A FAT3 Missense_Mutation p.S3657Y 0.29 probably_damaging(0.957) TCGA-77-A5G6-01 11 94730973 94730973 A T KDM4D Missense_Mutation p.D146V 0.36 deleterious(0) probably_damaging(0.945) TCGA-77-A5G6-01 12 103245488 103245488 G T PAH Missense_Mutation p.R297S 0.46 tolerated(0.07) benign(0.009) TCGA-77-A5G6-01 12 106715299 106715299 G T TCP11L2 Silent p.R150R 0.44 TCGA-77-A5G6-01 12 111733167 111733167 G C CUX2 Silent p.A197A 0.49 TCGA-77-A5G6-01 12 113442904 113442904 G T OAS2 Nonsense_Mutation p.E449* 0.23 TCGA-77-A5G6-01 12 114836408 114836408 G T TBX5 Silent p.L160L 0.29 TCGA-77-A5G6-01 12 114836409 114836409 A T TBX5 Missense_Mutation p.L160H 0.30 deleterious(0) probably_damaging(0.998) TCGA-77-A5G6-01 12 117603305 117603306 - C FBXO21 Frame_Shift_Ins p.I438Nfs*15 0.22 TCGA-77-A5G6-01 12 121176409 121176409 C T ACADS Missense_Mutation p.A290V 0.47 deleterious(0.02) possibly_damaging(0.774) TCGA-77-A5G6-01 12 121790028 121790028 A G ANAPC5 Missense_Mutation p.V39A 0.20 tolerated(0.42) benign(0.021) TCGA-77-A5G6-01 12 122677326 122677326 T C LRRC43 Missense_Mutation p.V375A 0.21 tolerated(0.64) benign(0.002) TCGA-77-A5G6-01 12 123414451 123414451 C - ABCB9 3'UTR 0.35 TCGA-77-A5G6-01 12 124333426 124333426 C G DNAH10 Missense_Mutation p.F1915L 0.24 possibly_damaging(0.656) TCGA-77-A5G6-01 12 128899736 128899736 G - TMEM132C Frame_Shift_Del p.G183Afs*5 0.12 TCGA-77-A5G6-01 12 129558552 129558552 G A TMEM132D Silent p.D1056D 0.20 TCGA-77-A5G6-01 12 132561990 132561990 G T EP400 Silent p.G3048G 0.50 TCGA-77-A5G6-01 12 1940622 1940622 G T LRTM2 Missense_Mutation p.D197Y 0.49 deleterious(0.02) possibly_damaging(0.873) TCGA-77-A5G6-01 12 21207444 21207444 C A SLCO1B7 Missense_Mutation p.A472E 0.36 deleterious(0) probably_damaging(0.981) TCGA-77-A5G6-01 12 39688279 39688280 - T KIF21A Frame_Shift_Ins p.D1658Rfs*6 0.27 TCGA-77-A5G6-01 12 43771366 43771366 C A ADAMTS20 Splice_Site p.X1600_splice 0.35 TCGA-77-A5G6-01 12 44782501 44782501 T A TMEM117 3'UTR 0.51 TCGA-77-A5G6-01 12 46321329 46321329 T C SCAF11 Missense_Mutation p.M719V 0.36 deleterious(0.04) possibly_damaging(0.504) TCGA-77-A5G6-01 12 48110728 48110729 GG T ENDOU Frame_Shift_Del p.S165Rfs*71 0.15 TCGA-77-A5G6-01 12 49233685 49233685 G A DDX23 Missense_Mutation p.P141L 0.57 deleterious(0.03) possibly_damaging(0.637) TCGA-77-A5G6-01 12 49722736 49722736 C A TROAP Silent p.P306P 0.44 TCGA-77-A5G6-01 12 5021748 5021748 C A KCNA1 Missense_Mutation p.L402M 0.33 deleterious(0) probably_damaging(1) TCGA-77-A5G6-01 12 50369502 50369502 C A AQP6 3'UTR 0.64 TCGA-77-A5G6-01 12 53552280 53552280 C A CSAD 3'UTR 0.20 TCGA-77-A5G6-01 12 54577456 54577456 C A SMUG1 Missense_Mutation p.G90V 0.33 deleterious(0) probably_damaging(0.996) TCGA-77-A5G6-01 12 54577457 54577457 C A SMUG1 Missense_Mutation p.G90C 0.34 deleterious(0) probably_damaging(0.999) TCGA-77-A5G6-01 12 54970440 54970440 C A PDE1B Missense_Mutation p.R488S 0.42 tolerated(0.39) benign(0) TCGA-77-A5G6-01 12 57389662 57389662 C A GPR182 Silent p.T223T 0.21 TCGA-77-A5G6-01 12 58023885 58023885 G C B4GALNT1 Intron 0.38 TCGA-77-A5G6-01 12 7045067 7045067 C G ATN1 Missense_Mutation p.P213A 0.47 benign(0.001) TCGA-77-A5G6-01 12 72335394 72335394 G T TPH2 Missense_Mutation p.D46Y 0.46 deleterious(0.01) benign(0.355) TCGA-77-A5G6-01 12 72771812 72771812 G T TRHDE Missense_Mutation p.G364V 0.31 deleterious(0) possibly_damaging(0.723) TCGA-77-A5G6-01 12 78444816 78444816 G C NAV3 Missense_Mutation p.S802T 0.26 tolerated(0.42) benign(0.075) TCGA-77-A5G6-01 12 81536894 81536894 T G ACSS3 Silent p.V263V 0.45 TCGA-77-A5G6-01 12 8234825 8234825 T A NECAP1 5'UTR 0.52 TCGA-77-A5G6-01 12 91348068 91348068 C T CCER1 Missense_Mutation p.R151H 0.28 deleterious(0) probably_damaging(0.923) TCGA-77-A5G6-01 12 91365748 91365748 A G EPYC Silent p.N177N 0.22 TCGA-77-A5G6-01 13 101755644 101755644 T A NALCN Missense_Mutation p.E979V 0.76 tolerated(0.06) benign(0.04) TCGA-77-A5G6-01 13 102047654 102047654 C A NALCN Silent p.T57T 0.80 TCGA-77-A5G6-01 13 107863002 107863002 C G FAM155A Silent p.T339T 0.73 TCGA-77-A5G6-01 13 109318473 109318473 A T MYO16 Missense_Mutation p.I68F 0.76 deleterious(0) probably_damaging(0.971) TCGA-77-A5G6-01 13 111944736 111944736 G A ARHGEF7 3'UTR 0.75 TCGA-77-A5G6-01 13 114322193 114322193 G C GRK1 Missense_Mutation p.E164D 0.32 tolerated(0.58) benign(0.055) TCGA-77-A5G6-01 13 19753537 19753537 C A TUBA3C Missense_Mutation p.G57V 0.76 deleterious_low_confidence(0.03) probably_damaging(0.934) TCGA-77-A5G6-01 13 23909694 23909694 C T SACS Missense_Mutation p.R2774K 0.33 probably_damaging(0.983) TCGA-77-A5G6-01 13 24380100 24380100 C A MIPEP Missense_Mutation p.V613F 0.05 deleterious(0) probably_damaging(0.981) TCGA-77-A5G6-01 13 28644633 28644633 G T FLT3 Missense_Mutation p.P54T 0.79 tolerated_low_confidence(0.14) benign(0.071) TCGA-77-A5G6-01 13 28866658 28866658 A T PAN3 Nonstop_Mutation p.*888Lext*? 0.53 TCGA-77-A5G6-01 13 46924398 46924398 G T KIAA0226L Silent p.A473A 0.92 TCGA-77-A5G6-01 13 47409446 47409446 G A HTR2A Silent p.S314S 0.84 TCGA-77-A5G6-01 13 92345983 92345983 C A GPC5 Missense_Mutation p.P290T 0.35 tolerated(0.62) benign(0.026) TCGA-77-A5G6-01 13 95121213 95121213 G T DCT Missense_Mutation p.Q128K 0.63 tolerated(0.69) benign(0.002) TCGA-77-A5G6-01 14 102918826 102918826 G A TECPR2 Missense_Mutation p.E1168K 0.19 tolerated(0.05) benign(0) TCGA-77-A5G6-01 14 105410781 105410781 T A AHNAK2 Missense_Mutation p.E3669D 0.59 probably_damaging(0.953) TCGA-77-A5G6-01 14 106347405 106347405 T A IGHD6-25 Missense_Mutation p.S4C 0.73 unknown(0) TCGA-77-A5G6-01 14 106791268 106791268 C T IGHV3-30 Missense_Mutation p.V30M 0.08 deleterious_low_confidence(0.01) benign(0.173) TCGA-77-A5G6-01 14 20295829 20295829 C G OR4N2 Silent p.S74S 0.26 TCGA-77-A5G6-01 14 20295837 20295837 T A OR4N2 Missense_Mutation p.V77E 0.18 deleterious(0) possibly_damaging(0.843) TCGA-77-A5G6-01 14 20852049 20852049 G A TEP1 Missense_Mutation p.P1188L 0.35 tolerated(0.07) benign(0.084) TCGA-77-A5G6-01 14 21109105 21109105 A G OR6S1 Missense_Mutation p.I249T 0.37 tolerated(1) benign(0.014) TCGA-77-A5G6-01 14 22362686 22362686 C A TRAV8-4 5'UTR 0.12 TCGA-77-A5G6-01 14 22362687 22362687 C A TRAV8-4 5'UTR 0.12 TCGA-77-A5G6-01 14 24040538 24040538 G C JPH4 Missense_Mutation p.R468G 0.35 tolerated(0.32) benign(0.026) TCGA-77-A5G6-01 14 47426606 47426606 C A MDGA2 Missense_Mutation p.G687V 0.26 deleterious(0) probably_damaging(0.973) TCGA-77-A5G6-01 14 47530504 47530504 C A MDGA2 Missense_Mutation p.K491N 0.33 tolerated(0.28) benign(0.067) TCGA-77-A5G6-01 14 60574718 60574718 G T PCNXL4 Intron 0.39 TCGA-77-A5G6-01 14 64749573 64749573 G A ESR2 Missense_Mutation p.P44L 0.52 deleterious(0.01) possibly_damaging(0.474) TCGA-77-A5G6-01 14 70633997 70633997 G T SLC8A3 Silent p.S381S 0.40 TCGA-77-A5G6-01 14 70634000 70634000 G T SLC8A3 Silent p.A380A 0.40 TCGA-77-A5G6-01 14 74370759 74370759 G T ZNF410 Missense_Mutation p.C243F 0.22 deleterious(0) probably_damaging(1) TCGA-77-A5G6-01 14 77951032 77951032 G T ISM2 Missense_Mutation p.N124K 0.62 tolerated(0.12) possibly_damaging(0.827) TCGA-77-A5G6-01 14 94712785 94712785 T A PPP4R4 Missense_Mutation p.L507H 0.22 deleterious(0) probably_damaging(0.996) TCGA-77-A5G6-01 14 95574026 95574026 C A DICER1 Missense_Mutation p.G908V 0.15 tolerated(0.07) probably_damaging(0.999) TCGA-77-A5G6-01 14 96706547 96706547 G T BDKRB2 Intron 0.68 TCGA-77-A5G6-01 15 20588594 20588594 G A HERC2P3 RNA 0.21 TCGA-77-A5G6-01 15 22947084 22947084 G C CYFIP1 Missense_Mutation p.E453Q 0.36 tolerated(0.14) benign(0.402) TCGA-77-A5G6-01 15 31352811 31352811 G T TRPM1 Missense_Mutation p.A417E 0.21 deleterious(0) probably_damaging(0.997) TCGA-77-A5G6-01 15 33941391 33941392 - A RYR3 Frame_Shift_Ins p.V1367Sfs*8 0.25 TCGA-77-A5G6-01 15 33952547 33952547 G T RYR3 Silent p.V1515V 0.38 TCGA-77-A5G6-01 15 34640508 34640508 C A NUTM1 Missense_Mutation p.P119T 0.44 deleterious(0) possibly_damaging(0.61) TCGA-77-A5G6-01 15 41961317 41961317 C G MGA Missense_Mutation p.I75M 0.17 deleterious(0) possibly_damaging(0.703) TCGA-77-A5G6-01 15 42743907 42743907 T G ZNF106 Missense_Mutation p.K165T 0.46 tolerated(0.16) benign(0.015) TCGA-77-A5G6-01 15 45007682 45007682 G A B2M Silent p.L43L 0.13 TCGA-77-A5G6-01 15 54793090 54793090 C A UNC13C Missense_Mutation p.Q1739K 0.51 deleterious_low_confidence(0) possibly_damaging(0.872) TCGA-77-A5G6-01 15 54847707 54847707 C A UNC13C Silent p.I1985I 0.39 TCGA-77-A5G6-01 15 60297174 60297174 C G FOXB1 Silent p.P4P 0.50 TCGA-77-A5G6-01 15 60720700 60720700 T A NARG2 Silent p.P916P 0.39 TCGA-77-A5G6-01 15 62266555 62266555 C G VPS13C Missense_Mutation p.D824H 0.18 deleterious(0.01) benign(0.322) TCGA-77-A5G6-01 15 63008586 63008586 A C TLN2 Silent p.A897A 0.23 TCGA-77-A5G6-01 15 86800170 86800170 C T AGBL1 Silent p.P228P 0.34 TCGA-77-A5G6-01 15 99512766 99512766 C T PGPEP1L Missense_Mutation p.V87M 0.50 tolerated(0.05) possibly_damaging(0.843) TCGA-77-A5G6-01 16 10997618 10997618 C A CIITA Missense_Mutation p.P268H 0.27 deleterious(0) possibly_damaging(0.738) TCGA-77-A5G6-01 16 1259282 1259282 G T CACNA1H Missense_Mutation p.R1205L 0.64 tolerated(0.25) benign(0.06) TCGA-77-A5G6-01 16 1306804 1306804 C A TPSD1 Silent p.I87I 0.44 TCGA-77-A5G6-01 16 28596967 28596967 A G CCDC101 Splice_Site p.X51_splice 0.44 TCGA-77-A5G6-01 16 29124403 29124403 G A RP11-426C22.5 5'Flank 0.43 TCGA-77-A5G6-01 16 29675480 29675480 G T SPN Missense_Mutation p.S144I 0.20 deleterious(0.03) possibly_damaging(0.883) TCGA-77-A5G6-01 16 30036896 30036896 A T FAM57B Intron 0.13 TCGA-77-A5G6-01 16 3065846 3065846 G T CLDN6 Silent p.T59T 0.53 TCGA-77-A5G6-01 16 3065847 3065847 G T CLDN6 Missense_Mutation p.T59N 0.53 deleterious(0) probably_damaging(0.999) TCGA-77-A5G6-01 16 30749513 30749513 C T SRCAP Nonsense_Mutation p.R2718* 0.49 TCGA-77-A5G6-01 16 31424173 31424173 C T ITGAD Silent p.S574S 0.44 TCGA-77-A5G6-01 16 46761265 46761265 G T MYLK3 Missense_Mutation p.D599E 0.47 deleterious(0.03) possibly_damaging(0.897) TCGA-77-A5G6-01 16 55527184 55527184 A G MMP2 Missense_Mutation p.E484G 0.53 deleterious(0.02) probably_damaging(0.978) TCGA-77-A5G6-01 16 58031075 58031075 G A ZNF319 Silent p.H365H 0.44 TCGA-77-A5G6-01 16 68026524 68026524 G T DPEP2 Silent p.P93P 0.21 TCGA-77-A5G6-01 16 89703085 89703085 C A DPEP1 Missense_Mutation p.T172K 0.20 deleterious(0) probably_damaging(1) TCGA-77-A5G6-01 17 10417382 10417382 G T MYH1 Missense_Mutation p.T198K 0.14 deleterious(0.02) possibly_damaging(0.669) TCGA-77-A5G6-01 17 10447320 10447320 C A MYH2 Missense_Mutation p.A183S 0.48 deleterious(0.04) possibly_damaging(0.655) TCGA-77-A5G6-01 17 169259 169259 C A RPH3AL Silent p.V101V 0.74 TCGA-77-A5G6-01 17 25932547 25932547 G T KSR1 Missense_Mutation p.G453C 0.77 deleterious(0) probably_damaging(0.984) TCGA-77-A5G6-01 17 26824121 26824121 G T SLC13A2 Missense_Mutation p.R587L 0.65 deleterious(0) possibly_damaging(0.491) TCGA-77-A5G6-01 17 27014391 27014391 G C SUPT6H Missense_Mutation p.G970R 0.80 deleterious(0) probably_damaging(1) TCGA-77-A5G6-01 17 28407853 28407853 C T EFCAB5 Missense_Mutation p.R1094C 0.55 deleterious(0) probably_damaging(0.949) TCGA-77-A5G6-01 17 40321585 40321585 A T KCNH4 Silent p.R500R 0.66 TCGA-77-A5G6-01 17 42476669 42476669 G A GPATCH8 Missense_Mutation p.H926Y 0.67 tolerated(0.29) unknown(0) TCGA-77-A5G6-01 17 46673687 46673687 C T HOXB6 3'UTR 0.72 TCGA-77-A5G6-01 17 55027698 55027698 A C COIL Missense_Mutation p.L302R 0.36 deleterious(0.05) possibly_damaging(0.672) TCGA-77-A5G6-01 17 61903478 61903478 T C FTSJ3 Missense_Mutation p.I80V 0.42 deleterious(0) probably_damaging(0.944) TCGA-77-A5G6-01 17 62084021 62084021 C A ICAM2 Missense_Mutation p.V11L 0.80 tolerated(0.33) benign(0.003) TCGA-77-A5G6-01 17 65734239 65734239 A G NOL11 Missense_Mutation p.I511V 0.84 tolerated(0.37) benign(0.024) TCGA-77-A5G6-01 17 66920847 66920847 G A ABCA8 Silent p.A479A 0.78 TCGA-77-A5G6-01 17 66982348 66982348 C A ABCA9 Missense_Mutation p.V1389L 0.76 deleterious(0.01) probably_damaging(0.941) TCGA-77-A5G6-01 17 67004259 67004259 C A ABCA9 Missense_Mutation p.D1089Y 0.37 tolerated(1) benign(0.005) TCGA-77-A5G6-01 17 74090603 74090603 G T EXOC7 Missense_Mutation p.L234M 0.81 tolerated(0.12) benign(0.326) TCGA-77-A5G6-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.58 deleterious(0) probably_damaging(1) TCGA-77-A5G6-01 17 76201575 76201575 A T AFMID Missense_Mutation p.Q207L 0.81 tolerated(0.43) benign(0.132) TCGA-77-A5G6-01 17 77758807 77758807 C G CBX2 Missense_Mutation p.T522S 0.34 deleterious(0) probably_damaging(0.918) TCGA-77-A5G6-01 17 78449519 78449519 C G NPTX1 Splice_Site p.X149_splice 0.28 TCGA-77-A5G6-01 17 915984 915984 C G ABR Missense_Mutation p.R635S 1.00 tolerated(0.15) benign(0.005) TCGA-77-A5G6-01 18 19192348 19192348 A C SNRPD1 5'UTR 0.07 TCGA-77-A5G6-01 18 28934589 28934589 T A DSG1 Silent p.S810S 0.46 TCGA-77-A5G6-01 18 29056190 29056190 C A DSG3 Silent p.L989L 0.28 TCGA-77-A5G6-01 18 29126254 29126254 G T DSG2 Missense_Mutation p.A969S 0.21 deleterious(0.01) possibly_damaging(0.706) TCGA-77-A5G6-01 18 29175123 29175123 G T TTR Nonsense_Mutation p.E81* 0.48 TCGA-77-A5G6-01 18 34289066 34289066 G T FHOD3 Missense_Mutation p.G574W 0.33 deleterious_low_confidence(0.02) benign(0.002) TCGA-77-A5G6-01 18 3581921 3581921 C A DLGAP1 Missense_Mutation p.R639S 0.40 tolerated(0.78) benign(0.033) TCGA-77-A5G6-01 18 45371729 45371729 C G SMAD2 Missense_Mutation p.G421A 0.32 deleterious(0) probably_damaging(0.998) TCGA-77-A5G6-01 18 46570438 46570438 A G DYM Missense_Mutation p.M666T 0.47 tolerated(0.34) benign(0.175) TCGA-77-A5G6-01 18 48248343 48248343 G T MAPK4 Nonsense_Mutation p.E243* 0.31 TCGA-77-A5G6-01 18 58039563 58039563 C A MC4R Missense_Mutation p.R7L 0.37 tolerated_low_confidence(0.43) benign(0) TCGA-77-A5G6-01 18 59217261 59217261 C A CDH20 Missense_Mutation p.Q567K 0.36 tolerated(0.06) probably_damaging(0.991) TCGA-77-A5G6-01 18 65180585 65180585 C T DSEL Missense_Mutation p.G431R 0.39 deleterious(0.04) probably_damaging(1) TCGA-77-A5G6-01 18 66564663 66564663 C T CCDC102B Nonsense_Mutation p.Q421* 0.32 TCGA-77-A5G6-01 18 74580765 74580765 A C ZNF236 Missense_Mutation p.E161A 0.06 deleterious(0.05) possibly_damaging(0.626) TCGA-77-A5G6-01 18 74580766 74580766 G T ZNF236 Missense_Mutation p.E161D 0.06 tolerated(0.13) benign(0.077) TCGA-77-A5G6-01 19 10461746 10461746 G - TYK2 Frame_Shift_Del p.D1138Tfs*11 0.18 TCGA-77-A5G6-01 19 10461766 10461766 C A TYK2 Missense_Mutation p.G1131W 0.40 deleterious(0) probably_damaging(0.999) TCGA-77-A5G6-01 19 12383342 12383342 T A ZNF44 Silent p.R624R 0.54 TCGA-77-A5G6-01 19 12958142 12958142 C A MAST1 Silent p.P122P 0.46 TCGA-77-A5G6-01 19 13991460 13991460 G T NANOS3 3'Flank 0.50 TCGA-77-A5G6-01 19 15537826 15537827 CC A WIZ Frame_Shift_Del p.A350Hfs*6 0.25 TCGA-77-A5G6-01 19 15575050 15575050 C A RASAL3 Missense_Mutation p.W40C 0.48 deleterious(0) probably_damaging(0.998) TCGA-77-A5G6-01 19 16799044 16799044 G T TMEM38A Silent p.G254G 0.51 TCGA-77-A5G6-01 19 19327769 19327769 G A NCAN Missense_Mutation p.A3T 0.26 tolerated_low_confidence(0.19) benign(0.03) TCGA-77-A5G6-01 19 1952933 1952933 G T CSNK1G2 Intron 0.35 TCGA-77-A5G6-01 19 20748576 20748576 G A ZNF737 5'Flank 0.13 TCGA-77-A5G6-01 19 21909565 21909565 C G ZNF100 Missense_Mutation p.E517Q 0.20 deleterious(0.01) possibly_damaging(0.579) TCGA-77-A5G6-01 19 21992308 21992308 T C ZNF43 Silent p.K177K 0.17 TCGA-77-A5G6-01 19 23405263 23405263 C A ZNF724P Missense_Mutation p.C595F 0.40 deleterious(0) probably_damaging(0.926) TCGA-77-A5G6-01 19 3286018 3286018 G C CELF5 Missense_Mutation p.R394P 0.32 deleterious(0.04) benign(0.002) TCGA-77-A5G6-01 19 33457348 33457348 G A CEP89 Missense_Mutation p.P22S 0.40 deleterious(0) possibly_damaging(0.727) TCGA-77-A5G6-01 19 36017759 36017759 T A SBSN Missense_Mutation p.K475N 0.32 deleterious(0.01) possibly_damaging(0.895) TCGA-77-A5G6-01 19 36149649 36149649 G T COX6B1 3'UTR 0.68 TCGA-77-A5G6-01 19 37118176 37118176 G - ZNF382 Frame_Shift_Del p.E461Kfs*84 0.24 TCGA-77-A5G6-01 19 38877044 38877044 G A GGN Silent p.A286A 0.17 TCGA-77-A5G6-01 19 39002235 39002235 C A RYR1 Silent p.R3053R 0.49 TCGA-77-A5G6-01 19 39805137 39805137 G T LRFN1 Missense_Mutation p.H280Q 0.22 tolerated(0.3) benign(0.017) TCGA-77-A5G6-01 19 39805284 39805284 G A LRFN1 Silent p.F231F 0.23 TCGA-77-A5G6-01 19 39994845 39994845 C A DLL3 Missense_Mutation p.P263T 0.46 deleterious(0) benign(0.424) TCGA-77-A5G6-01 19 42584227 42584227 G T ZNF574 Missense_Mutation p.R490L 0.24 tolerated(0.21) probably_damaging(0.913) TCGA-77-A5G6-01 19 43258522 43258522 G T PSG8 Silent p.G402G 0.23 TCGA-77-A5G6-01 19 45368754 45368754 C T PVRL2 Silent p.F105F 0.19 TCGA-77-A5G6-01 19 47935563 47935563 G T SLC8A2 Silent p.A750A 0.29 TCGA-77-A5G6-01 19 4818321 4818321 G C TICAM1 Silent p.L23L 0.23 TCGA-77-A5G6-01 19 48306195 48306195 G T TPRX1 Silent p.R25R 0.20 TCGA-77-A5G6-01 19 48519235 48519235 G T ELSPBP1 Silent p.L98L 0.45 TCGA-77-A5G6-01 19 48547194 48547194 G T CABP5 5'UTR 0.60 TCGA-77-A5G6-01 19 50792805 50792805 G A MYH14 Missense_Mutation p.R1622H 0.47 deleterious(0.01) possibly_damaging(0.736) TCGA-77-A5G6-01 19 51219978 51219978 C G SHANK1 Missense_Mutation p.D67H 0.32 probably_damaging(0.979) TCGA-77-A5G6-01 19 51330954 51330954 G C KLK15 Missense_Mutation p.P54R 0.45 tolerated(0.09) possibly_damaging(0.724) TCGA-77-A5G6-01 19 51363131 51363131 G A KLK3 Intron 0.41 TCGA-77-A5G6-01 19 51512830 51512830 C A KLK9 5'UTR 0.17 TCGA-77-A5G6-01 19 51629098 51629098 G T SIGLEC9 Silent p.V222V 0.28 TCGA-77-A5G6-01 19 54314317 54314317 A G NLRP12 Missense_Mutation p.L199P 0.48 deleterious(0) probably_damaging(0.999) TCGA-77-A5G6-01 19 55299904 55299904 T C KIR2DL1 3'Flank 0.50 TCGA-77-A5G6-01 19 55450953 55450954 GC - NLRP7 Frame_Shift_Del p.L412Afs*115 0.30 TCGA-77-A5G6-01 19 56370556 56370556 G T NLRP4 Missense_Mutation p.L599F 0.46 deleterious(0) probably_damaging(0.997) TCGA-77-A5G6-01 19 57330067 57330067 C G PEG3 Missense_Mutation p.A225P 0.56 deleterious(0.02) probably_damaging(0.927) TCGA-77-A5G6-01 19 57649841 57649841 C A ZIM3 Silent p.V47V 0.39 TCGA-77-A5G6-01 19 59028463 59028463 G - ZBTB45 Frame_Shift_Del p.P193Lfs*130 0.15 TCGA-77-A5G6-01 19 59068458 59068458 T C UBE2M Missense_Mutation p.N59S 0.24 tolerated(0.07) benign(0.015) TCGA-77-A5G6-01 19 7670265 7670290 CCTCTGCACTGCTGGCCCTGCTGGCG - CAMSAP3 Frame_Shift_Del p.S102Efs*32 0.19 TCGA-77-A5G6-01 19 8056695 8056695 G C ELAVL1 Missense_Mutation p.S2C 0.60 deleterious_low_confidence(0) possibly_damaging(0.751) TCGA-77-A5G6-01 19 828327 828327 C AA AZU1 Nonsense_Mutation p.C52* 0.27 TCGA-77-A5G6-01 19 8429466 8429466 C A ANGPTL4 Silent p.T87T 0.53 TCGA-77-A5G6-01 19 9028394 9028394 G T MUC16 Missense_Mutation p.P12133Q 0.15 benign(0.19) TCGA-77-A5G6-01 19 9071367 9071367 G T MUC16 Missense_Mutation p.S5360Y 0.50 unknown(0) TCGA-77-A5G6-01 19 9073752 9073752 G T MUC16 Missense_Mutation p.T4565K 0.33 unknown(0) TCGA-77-A5G6-01 19 9076674 9076674 G T MUC16 Missense_Mutation p.S3591Y 0.25 unknown(0) TCGA-77-A5G6-01 19 9076992 9076992 G C MUC16 Missense_Mutation p.A3485G 0.21 unknown(0) TCGA-77-A5G6-01 19 9362730 9362730 T C OR7E24 Silent p.Y337Y 0.33 TCGA-77-A5G6-01 1 101194925 101194925 G T VCAM1 Missense_Mutation p.Q397H 0.48 tolerated(0.12) benign(0.018) TCGA-77-A5G6-01 1 103491381 103491381 G A COL11A1 Intron 0.57 TCGA-77-A5G6-01 1 10521622 10521622 C T DFFA Silent p.R307R 0.56 TCGA-77-A5G6-01 1 111061002 111061002 G T KCNA10 Silent p.P136P 0.57 TCGA-77-A5G6-01 1 111690599 111690599 T C CEPT1 Missense_Mutation p.I88T 0.26 deleterious(0.01) probably_damaging(0.989) TCGA-77-A5G6-01 1 115223025 115223025 G C AMPD1 Missense_Mutation p.L241V 0.19 tolerated(0.45) benign(0.002) TCGA-77-A5G6-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.24 tolerated(0.06) benign(0.006) TCGA-77-A5G6-01 1 115576762 115576762 G A TSHB Missense_Mutation p.D111N 0.53 tolerated(0.06) probably_damaging(0.981) TCGA-77-A5G6-01 1 118420772 118420774 CAC - GDAP2 In_Frame_Del p.V435del 0.67 TCGA-77-A5G6-01 1 152129203 152129203 C T RPTN Silent p.R124R 0.38 TCGA-77-A5G6-01 1 152187979 152187979 G T HRNR Missense_Mutation p.H2042Q 0.05 unknown(0) TCGA-77-A5G6-01 1 152282210 152282210 G T FLG Missense_Mutation p.Q1718K 0.40 benign(0.149) TCGA-77-A5G6-01 1 152282211 152282211 G A FLG Silent p.S1717S 0.40 TCGA-77-A5G6-01 1 152324700 152324700 G A FLG2 Silent p.T1854T 0.36 TCGA-77-A5G6-01 1 154987616 154987616 C G ZBTB7B Silent p.R194R 0.29 TCGA-77-A5G6-01 1 155178615 155178615 C G MTX1 Missense_Mutation p.P7R 0.44 deleterious_low_confidence(0) unknown(0) TCGA-77-A5G6-01 1 155642453 155642453 G - YY1AP1 Frame_Shift_Del p.L299Cfs*7 0.20 TCGA-77-A5G6-01 1 158576492 158576492 G T OR10Z1 Silent p.G88G 0.25 TCGA-77-A5G6-01 1 159175525 159175525 T A DARC Missense_Mutation p.L101Q 0.42 deleterious(0) probably_damaging(1) TCGA-77-A5G6-01 1 160012092 160012092 G A KCNJ10 Silent p.G77G 0.36 TCGA-77-A5G6-01 1 160012093 160012093 C T KCNJ10 Missense_Mutation p.G77D 0.36 deleterious(0.01) probably_damaging(0.943) TCGA-77-A5G6-01 1 160093035 160093035 G A ATP1A2 Silent p.L70L 0.46 TCGA-77-A5G6-01 1 160719657 160719657 G T SLAMF7 Missense_Mutation p.K141N 0.41 deleterious(0.05) benign(0.279) TCGA-77-A5G6-01 1 161165293 161165293 C G ADAMTS4 Missense_Mutation p.S408T 0.37 deleterious(0) probably_damaging(0.995) TCGA-77-A5G6-01 1 162741913 162741913 G A DDR2 Missense_Mutation p.G535D 0.44 tolerated(0.05) benign(0.097) TCGA-77-A5G6-01 1 165218688 165218688 C T LMX1A Silent p.E151E 0.38 TCGA-77-A5G6-01 1 165380321 165380321 G T RXRG Missense_Mutation p.S216R 0.46 deleterious(0.04) possibly_damaging(0.593) TCGA-77-A5G6-01 1 175372712 175372712 G C TNR Missense_Mutation p.N180K 0.45 tolerated(0.06) benign(0.008) TCGA-77-A5G6-01 1 176998784 176998784 C G ASTN1 Missense_Mutation p.R369T 0.33 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-77-A5G6-01 1 177133737 177133737 C T ASTN1 Missense_Mutation p.D26N 0.32 deleterious_low_confidence(0.01) benign(0.234) TCGA-77-A5G6-01 1 181687274 181687274 C A CACNA1E Missense_Mutation p.H537N 0.42 deleterious(0.04) benign(0.322) TCGA-77-A5G6-01 1 181702795 181702795 G T CACNA1E Silent p.T1057T 0.26 TCGA-77-A5G6-01 1 197031001 197031001 A G F13B Missense_Mutation p.Y122H 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-77-A5G6-01 1 197390967 197390967 G C CRB1 Missense_Mutation p.C670S 0.21 deleterious(0) probably_damaging(0.999) TCGA-77-A5G6-01 1 198704350 198704350 A G PTPRC Missense_Mutation p.D791G 0.24 deleterious(0) probably_damaging(1) TCGA-77-A5G6-01 1 200529922 200529922 C T KIF14 Silent p.G1386G 0.45 TCGA-77-A5G6-01 1 201845300 201845300 C T IPO9 3'UTR 0.20 TCGA-77-A5G6-01 1 204085736 204085736 A T SOX13 Nonsense_Mutation p.K174* 0.28 TCGA-77-A5G6-01 1 207314537 207314537 T A C4BPA Missense_Mutation p.C454S 0.28 deleterious(0.02) probably_damaging(1) TCGA-77-A5G6-01 1 207697293 207697293 C G CR1 Silent p.P275P 0.17 TCGA-77-A5G6-01 1 207785323 207785323 G C CR1 Missense_Mutation p.G2171A 0.23 tolerated(0.07) probably_damaging(0.945) TCGA-77-A5G6-01 1 208266226 208266226 T C PLXNA2 Missense_Mutation p.S668G 0.29 tolerated(0.23) benign(0.001) TCGA-77-A5G6-01 1 215953309 215953309 A T USH2A Silent p.A3605A 0.48 TCGA-77-A5G6-01 1 215960025 215960025 C A USH2A Silent p.T3458T 0.38 TCGA-77-A5G6-01 1 216680270 216680270 G T ESRRG 3'UTR 0.45 TCGA-77-A5G6-01 1 227182556 227182556 T C CDC42BPA Missense_Mutation p.S1666G 0.22 tolerated(0.25) benign(0.005) TCGA-77-A5G6-01 1 22974237 22974237 T C C1QC Silent p.S233S 0.31 TCGA-77-A5G6-01 1 23520378 23520378 T A HTR1D Missense_Mutation p.D112V 0.57 deleterious(0) probably_damaging(1) TCGA-77-A5G6-01 1 237666760 237666760 C T RYR2 Silent p.S856S 0.17 TCGA-77-A5G6-01 1 241886690 241886690 C A WDR64 Silent p.I372I 0.39 TCGA-77-A5G6-01 1 241943337 241943337 T C WDR64 Silent p.S846S 0.14 TCGA-77-A5G6-01 1 247464359 247464359 G A ZNF496 Missense_Mutation p.P409L 0.18 tolerated(0.19) probably_damaging(0.998) TCGA-77-A5G6-01 1 247752038 247752038 A T OR2G2 Missense_Mutation p.Y126F 0.52 tolerated(0.3) probably_damaging(0.998) TCGA-77-A5G6-01 1 247875302 247875302 A G OR6F1 Silent p.Y252Y 0.25 TCGA-77-A5G6-01 1 248487562 248487562 G A OR2M7 Silent p.F103F 0.22 TCGA-77-A5G6-01 1 248636958 248636958 G A OR2T3 Missense_Mutation p.G103R 0.23 deleterious(0) possibly_damaging(0.741) TCGA-77-A5G6-01 1 248637593 248637593 G T OR2T3 Missense_Mutation p.M314I 0.13 tolerated(0.47) benign(0.003) TCGA-77-A5G6-01 1 248737853 248737853 C A OR2T34 Missense_Mutation p.S69I 0.40 deleterious(0) possibly_damaging(0.691) TCGA-77-A5G6-01 1 248790120 248790120 T C OR2T11 Missense_Mutation p.M104V 0.47 deleterious(0.04) benign(0.002) TCGA-77-A5G6-01 1 32145692 32145692 C A COL16A1 Missense_Mutation p.G874V 0.31 unknown(0) TCGA-77-A5G6-01 1 33476328 33476328 C G AK2 3'Flank 0.15 TCGA-77-A5G6-01 1 33998678 33998678 G A CSMD2 Silent p.S3237S 0.24 TCGA-77-A5G6-01 1 34166187 34166187 G C CSMD2 Silent p.S1181S 0.23 TCGA-77-A5G6-01 1 3745892 3745892 C A CEP104 Nonsense_Mutation p.E697* 0.48 TCGA-77-A5G6-01 1 46812709 46812709 G T NSUN4 Missense_Mutation p.G185V 0.45 deleterious(0) probably_damaging(0.99) TCGA-77-A5G6-01 1 47028451 47028451 T C MKNK1 Missense_Mutation p.Y278C 0.40 deleterious(0) probably_damaging(1) TCGA-77-A5G6-01 1 55074751 55074751 G T ACOT11 Intron 0.49 TCGA-77-A5G6-01 1 57394931 57394931 G T C8B 3'UTR 0.67 TCGA-77-A5G6-01 1 70291429 70291429 A T LRRC7 Splice_Site p.X103_splice 0.25 TCGA-77-A5G6-01 1 7796554 7796554 G T CAMTA1 Missense_Mutation p.A1073S 0.23 deleterious(0.02) probably_damaging(0.996) TCGA-77-A5G6-01 1 87379874 87379874 T C SEP15 5'UTR 0.61 TCGA-77-A5G6-01 1 9006016 9006016 C A CA6 Missense_Mutation p.T24N 0.33 deleterious(0) probably_damaging(0.978) TCGA-77-A5G6-01 20 18296825 18296825 G T ZNF133 Missense_Mutation p.G443W 0.47 deleterious(0) probably_damaging(0.998) TCGA-77-A5G6-01 20 21378042 21378042 C T NKX2-4 5'UTR 0.17 TCGA-77-A5G6-01 20 23669569 23669569 G T CST4 Missense_Mutation p.A13D 0.24 deleterious(0) benign(0.267) TCGA-77-A5G6-01 20 23856824 23856824 C T CST5 3'UTR 0.26 TCGA-77-A5G6-01 20 31825933 31825933 A G BPIFA1 Missense_Mutation p.K78R 0.36 tolerated(0.1) benign(0.376) TCGA-77-A5G6-01 20 33868624 33868624 G A EIF6 Missense_Mutation p.H68Y 0.33 tolerated(0.07) benign(0.005) TCGA-77-A5G6-01 20 35695658 35695658 C A RBL1 Missense_Mutation p.W178C 0.31 deleterious(0) probably_damaging(1) TCGA-77-A5G6-01 20 3673615 3673615 C T SIGLEC1 Silent p.L1224L 0.32 TCGA-77-A5G6-01 20 42788691 42788691 C A JPH2 Missense_Mutation p.V246F 0.50 tolerated(0.71) benign(0.221) TCGA-77-A5G6-01 20 43653741 43653741 G T STK4 Missense_Mutation p.W425C 0.31 tolerated(0.17) benign(0.289) TCGA-77-A5G6-01 20 43743683 43743683 A T WFDC5 Silent p.A14A 0.36 TCGA-77-A5G6-01 20 43929809 43929809 G A MATN4 Silent p.T274T 0.30 TCGA-77-A5G6-01 20 44506266 44506266 G T ZSWIM3 Missense_Mutation p.V357L 0.42 tolerated(1) benign(0) TCGA-77-A5G6-01 20 44839096 44839096 G A CDH22 Missense_Mutation p.A379V 0.29 tolerated(0.09) benign(0.214) TCGA-77-A5G6-01 20 62737963 62737963 G T NPBWR2 Silent p.P74P 0.55 TCGA-77-A5G6-01 20 76665 76665 A G DEFB125 Silent p.K26K 0.04 TCGA-77-A5G6-01 21 15858329 15858329 G T SAMSN1 Silent p.I410I 0.66 TCGA-77-A5G6-01 21 17163920 17163920 G T USP25 Missense_Mutation p.Q164H 0.67 tolerated(0.12) benign(0.437) TCGA-77-A5G6-01 21 19725340 19725340 C A TMPRSS15 Missense_Mutation p.D351Y 0.57 deleterious(0) probably_damaging(0.996) TCGA-77-A5G6-01 21 45744486 45744486 G T PFKL Missense_Mutation p.G588V 0.70 deleterious(0) probably_damaging(1) TCGA-77-A5G6-01 22 17472854 17472854 G T GAB4 Silent p.T129T 0.31 TCGA-77-A5G6-01 22 20127712 20127712 T C ZDHHC8 Missense_Mutation p.V211A 0.05 deleterious(0.01) probably_damaging(0.994) TCGA-77-A5G6-01 22 21800966 21800966 C T HIC2 Silent p.C594C 0.12 TCGA-77-A5G6-01 22 24717587 24717587 G T SPECC1L Silent p.L213L 0.53 TCGA-77-A5G6-01 22 24982300 24982300 C T FAM211B Missense_Mutation p.V168M 0.10 tolerated(0.31) benign(0.031) TCGA-77-A5G6-01 22 26242083 26242083 C G MYO18B Missense_Mutation p.L1129V 0.64 deleterious(0.02) probably_damaging(0.992) TCGA-77-A5G6-01 22 26830225 26830225 C T ASPHD2 Missense_Mutation p.P215L 0.61 deleterious(0) probably_damaging(1) TCGA-77-A5G6-01 22 35806741 35806741 C T MCM5 Silent p.L253L 0.27 TCGA-77-A5G6-01 22 37325510 37325510 G A CSF2RB Missense_Mutation p.S153N 0.46 tolerated(0.23) benign(0.002) TCGA-77-A5G6-01 22 39909967 39909967 C T MIEF1 Missense_Mutation p.A344V 0.43 tolerated(0.24) possibly_damaging(0.561) TCGA-77-A5G6-01 22 47064062 47064062 C A GRAMD4 Missense_Mutation p.Q310K 0.12 deleterious(0) possibly_damaging(0.695) TCGA-77-A5G6-01 2 105472259 105472259 G C POU3F3 Missense_Mutation p.W97C 0.31 deleterious_low_confidence(0) benign(0) TCGA-77-A5G6-01 2 112740547 112740547 G A MERTK Missense_Mutation p.V425M 0.23 tolerated(0.13) benign(0.009) TCGA-77-A5G6-01 2 116573267 116573267 C A DPP10 Missense_Mutation p.P642T 0.13 tolerated(0.06) benign(0.017) TCGA-77-A5G6-01 2 11758555 11758555 C T GREB1 Missense_Mutation p.P1185L 0.36 tolerated(0.45) benign(0.1) TCGA-77-A5G6-01 2 120204371 120204371 G T SCTR Silent p.I368I 0.24 TCGA-77-A5G6-01 2 125192237 125192237 G T CNTNAP5 Missense_Mutation p.G236W 0.23 deleterious(0) probably_damaging(1) TCGA-77-A5G6-01 2 130952732 130952732 C G TUBA3E Missense_Mutation p.A99P 0.30 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-77-A5G6-01 2 136393513 136393513 A C R3HDM1 Missense_Mutation p.Q251P 0.22 tolerated(0.14) probably_damaging(1) TCGA-77-A5G6-01 2 141208136 141208136 C A LRP1B Splice_Site p.X3353_splice 0.45 TCGA-77-A5G6-01 2 141356405 141356405 C T LRP1B Splice_Site p.X2330_splice 0.33 TCGA-77-A5G6-01 2 145156692 145156692 C G ZEB2 Missense_Mutation p.V688L 0.25 deleterious(0) possibly_damaging(0.484) TCGA-77-A5G6-01 2 149240713 149240713 G A MBD5 Silent p.A851A 0.23 TCGA-77-A5G6-01 2 155252514 155252514 G C GALNT13 Missense_Mutation p.V390L 0.15 tolerated(0.66) benign(0.044) TCGA-77-A5G6-01 2 179408941 179408941 G A TTN Silent p.P32005P 0.25 TCGA-77-A5G6-01 2 179419606 179419606 C A TTN Missense_Mutation p.R29527I 0.31 TCGA-77-A5G6-01 2 179434795 179434795 T A TTN Missense_Mutation p.H25355L 0.42 TCGA-77-A5G6-01 2 179462322 179462322 G T TTN Missense_Mutation p.L19163I 0.24 TCGA-77-A5G6-01 2 179614923 179614923 G T TTN Intron 0.51 TCGA-77-A5G6-01 2 179622519 179622519 C T TTN Silent p.V3476V 0.37 TCGA-77-A5G6-01 2 179635146 179635146 G T TTN Missense_Mutation p.H2791Q 0.51 TCGA-77-A5G6-01 2 186671547 186671547 G T FSIP2 Missense_Mutation p.E5927D 0.34 possibly_damaging(0.566) TCGA-77-A5G6-01 2 188348942 188348942 C A TFPI Silent p.P179P 0.24 TCGA-77-A5G6-01 2 1893132 1893132 G A MYT1L Nonsense_Mutation p.Q799* 0.32 TCGA-77-A5G6-01 2 191795202 191795202 C G GLS Missense_Mutation p.L489V 0.54 tolerated(0.07) benign(0.109) TCGA-77-A5G6-01 2 192701344 192701344 C A SDPR Nonsense_Mutation p.E195* 0.19 TCGA-77-A5G6-01 2 198263225 198263225 G A SF3B1 Nonsense_Mutation p.Q1032* 0.32 TCGA-77-A5G6-01 2 200213837 200213837 G A SATB2 Missense_Mutation p.H254Y 0.32 tolerated(0.13) benign(0.013) TCGA-77-A5G6-01 2 202251141 202251141 C G TRAK2 Missense_Mutation p.R588P 0.25 deleterious(0) probably_damaging(0.988) TCGA-77-A5G6-01 2 207509349 207509349 C G AC010731.4 RNA 0.24 TCGA-77-A5G6-01 2 219294099 219294099 C T VIL1 Missense_Mutation p.P220L 0.26 deleterious(0.01) possibly_damaging(0.448) TCGA-77-A5G6-01 2 227942690 227942690 C T COL4A4 Missense_Mutation p.G636D 0.08 probably_damaging(0.989) TCGA-77-A5G6-01 2 228783515 228783515 T A DAW1 Missense_Mutation p.S331R 0.56 deleterious(0.04) benign(0.009) TCGA-77-A5G6-01 2 228884297 228884297 C A SPHKAP Nonsense_Mutation p.G425* 0.26 TCGA-77-A5G6-01 2 240061401 240061401 G A HDAC4 Silent p.A319A 0.22 TCGA-77-A5G6-01 2 241631697 241631697 G T AQP12A Missense_Mutation p.M110I 0.38 tolerated(0.33) benign(0.009) TCGA-77-A5G6-01 2 241658435 241658435 C A KIF1A Missense_Mutation p.Q1734H 0.19 deleterious(0.03) benign(0.05) TCGA-77-A5G6-01 2 241808664 241808664 G - AGXT Frame_Shift_Del p.G82Dfs*38 0.34 TCGA-77-A5G6-01 2 24222720 24222720 G T UBXN2A Nonsense_Mutation p.E255* 0.42 TCGA-77-A5G6-01 2 242573087 242573087 G A THAP4 Missense_Mutation p.A162V 0.17 tolerated_low_confidence(0.36) benign(0) TCGA-77-A5G6-01 2 3193222 3193222 G A TSSC1 Silent p.S349S 0.33 TCGA-77-A5G6-01 2 54133999 54133999 C A PSME4 Missense_Mutation p.G931W 0.47 deleterious(0) probably_damaging(0.998) TCGA-77-A5G6-01 2 55467192 55467192 C A MTIF2 Nonsense_Mutation p.E609* 0.55 TCGA-77-A5G6-01 2 61575402 61575402 C A USP34 Missense_Mutation p.G630C 0.36 deleterious_low_confidence(0.02) benign(0.159) TCGA-77-A5G6-01 2 61715735 61715735 T G XPO1 Missense_Mutation p.I732L 0.46 deleterious(0.03) benign(0.094) TCGA-77-A5G6-01 2 71058298 71058298 C A CD207 Silent p.G290G 0.17 TCGA-77-A5G6-01 2 71061023 71061023 C A CD207 Missense_Mutation p.V107F 0.61 tolerated(0.21) benign(0.007) TCGA-77-A5G6-01 2 71797034 71797034 G T DYSF Missense_Mutation p.W983C 0.38 deleterious(0) probably_damaging(0.999) TCGA-77-A5G6-01 2 73268057 73268057 G A SFXN5 Missense_Mutation p.R59C 0.27 tolerated(0.06) benign(0.062) TCGA-77-A5G6-01 2 79253898 79253898 G T REG3G Missense_Mutation p.A46S 0.41 tolerated(0.07) benign(0.102) TCGA-77-A5G6-01 2 79363096 79363096 C G REG1P RNA 0.35 TCGA-77-A5G6-01 2 79385456 79385456 G T REG3A Missense_Mutation p.T110K 0.36 tolerated(0.12) probably_damaging(0.994) TCGA-77-A5G6-01 2 89117929 89117929 C A AC096579.13 RNA 0.50 TCGA-77-A5G6-01 2 89117930 89117930 C G AC096579.13 RNA 0.50 TCGA-77-A5G6-01 2 89265896 89265896 C A IGKV1-6 Missense_Mutation p.G79V 0.48 deleterious(0.01) probably_damaging(0.947) TCGA-77-A5G6-01 2 90229328 90229328 G T IGKV1D-42 Missense_Mutation p.G50C 0.54 deleterious(0.02) probably_damaging(0.957) TCGA-77-A5G6-01 2 95847649 95847649 A T ZNF2 Missense_Mutation p.Q359L 0.41 deleterious(0.03) possibly_damaging(0.544) TCGA-77-A5G6-01 2 97164139 97164139 T A NEURL3 RNA 0.22 TCGA-77-A5G6-01 3 100065042 100065042 C G NIT2 Missense_Mutation p.L150V 0.26 tolerated(0.65) benign(0.014) TCGA-77-A5G6-01 3 108214653 108214653 G T MYH15 Missense_Mutation p.L249M 0.47 deleterious(0.02) probably_damaging(0.976) TCGA-77-A5G6-01 3 108672602 108672602 T C GUCA1C Missense_Mutation p.N3S 0.34 deleterious(0.03) benign(0.058) TCGA-77-A5G6-01 3 108822703 108822703 C A MORC1 Missense_Mutation p.M72I 0.33 deleterious(0) possibly_damaging(0.874) TCGA-77-A5G6-01 3 10953823 10953823 C T SLC6A11 Silent p.L314L 0.26 TCGA-77-A5G6-01 3 111769608 111769608 G T TMPRSS7 Missense_Mutation p.C268F 0.37 deleterious(0.02) probably_damaging(1) TCGA-77-A5G6-01 3 119301105 119301105 G T ADPRH Missense_Mutation p.G30V 0.19 deleterious(0) probably_damaging(0.999) TCGA-77-A5G6-01 3 119336879 119336879 G A PLA1A Silent p.L256L 0.25 TCGA-77-A5G6-01 3 119336882 119336882 C T PLA1A Silent p.I257I 0.24 TCGA-77-A5G6-01 3 143567235 143567235 C A SLC9A9 5'UTR 0.25 TCGA-77-A5G6-01 3 150396337 150396337 T A FAM194A Silent p.S372S 0.54 TCGA-77-A5G6-01 3 156175242 156175242 G A KCNAB1 Missense_Mutation p.V120I 0.24 tolerated(0.19) benign(0.02) TCGA-77-A5G6-01 3 158376760 158376760 T C GFM1 Missense_Mutation p.L378P 0.19 deleterious(0) probably_damaging(0.992) TCGA-77-A5G6-01 3 158402454 158402454 C A GFM1 Missense_Mutation p.Q636K 0.35 tolerated(0.33) benign(0.168) TCGA-77-A5G6-01 3 160964133 160964133 G - NMD3 Frame_Shift_Del p.E344Kfs*10 0.16 TCGA-77-A5G6-01 3 164737490 164737490 G C SI Nonsense_Mutation p.S1108* 0.41 TCGA-77-A5G6-01 3 164908139 164908139 G A SLITRK3 Silent p.V160V 0.24 TCGA-77-A5G6-01 3 169555276 169555276 T C LRRIQ4 Missense_Mutation p.W514R 0.17 deleterious(0) probably_damaging(0.969) TCGA-77-A5G6-01 3 170198353 170198353 A C SLC7A14 Missense_Mutation p.F573C 0.44 deleterious(0) probably_damaging(0.971) TCGA-77-A5G6-01 3 171177850 171177850 C A TNIK Translation_Start_Site p.M1? 0.30 deleterious_low_confidence(0) unknown(0) TCGA-77-A5G6-01 3 172052736 172052736 G C FNDC3B Silent p.L548L 0.09 TCGA-77-A5G6-01 3 173993297 173993297 G A NLGN1 Missense_Mutation p.R280H 0.12 tolerated_low_confidence(0.16) probably_damaging(0.984) TCGA-77-A5G6-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.47 tolerated(0.11) possibly_damaging(0.529) TCGA-77-A5G6-01 3 183027554 183027554 G C MCF2L2 Missense_Mutation p.H355D 0.19 deleterious(0.04) possibly_damaging(0.536) TCGA-77-A5G6-01 3 186330938 186330938 C A AHSG Missense_Mutation p.S3Y 0.38 deleterious(0) possibly_damaging(0.846) TCGA-77-A5G6-01 3 186330939 186330939 C A AHSG Silent p.S3S 0.38 TCGA-77-A5G6-01 3 196054449 196054449 G T TM4SF19 Missense_Mutation p.P5T 0.45 deleterious_low_confidence(0.04) benign(0.11) TCGA-77-A5G6-01 3 33450986 33450986 G T UBP1 Nonsense_Mutation p.Y221* 0.66 TCGA-77-A5G6-01 3 38781084 38781084 G T SCN10A Nonsense_Mutation p.C734* 0.70 TCGA-77-A5G6-01 3 42751233 42751233 G A CCDC13 Missense_Mutation p.S644F 0.60 tolerated(0.11) benign(0.014) TCGA-77-A5G6-01 3 46000901 46000901 G A FYCO1 Missense_Mutation p.R1191W 0.66 deleterious(0) probably_damaging(1) TCGA-77-A5G6-01 3 51312515 51312515 C T DOCK3 Missense_Mutation p.R852C 0.36 deleterious(0) probably_damaging(0.998) TCGA-77-A5G6-01 3 89259123 89259123 G T EPHA3 Missense_Mutation p.R89S 0.67 deleterious(0) probably_damaging(0.989) TCGA-77-A5G6-01 3 89457243 89457243 G T EPHA3 Missense_Mutation p.G575V 0.69 tolerated(0.36) benign(0.152) TCGA-77-A5G6-01 3 97851961 97851961 G A OR5H1 Silent p.L140L 0.36 TCGA-77-A5G6-01 4 114288772 114288772 G T ANK2 Nonsense_Mutation p.E3695* 0.61 TCGA-77-A5G6-01 4 1347104 1347104 C T UVSSA Silent p.D279D 0.33 TCGA-77-A5G6-01 4 155157583 155157583 G T DCHS2 Missense_Mutation p.Q2286K 0.80 deleterious(0.01) probably_damaging(0.969) TCGA-77-A5G6-01 4 26490931 26490931 C A CCKAR Silent p.P96P 0.30 TCGA-77-A5G6-01 4 41699206 41699206 G T LIMCH1 3'UTR 0.38 TCGA-77-A5G6-01 4 42618084 42618084 T A ATP8A1 Missense_Mutation p.K125N 0.43 tolerated(0.1) benign(0.011) TCGA-77-A5G6-01 4 42895602 42895602 A G GRXCR1 Missense_Mutation p.R107G 0.18 deleterious(0) probably_damaging(0.996) TCGA-77-A5G6-01 4 44449710 44449710 C T KCTD8 Silent p.E277E 0.47 TCGA-77-A5G6-01 4 47427840 47427840 C - GABRB1 Frame_Shift_Del p.R411Afs*33 0.26 TCGA-77-A5G6-01 4 48542496 48542496 G C FRYL Missense_Mutation p.P2057A 0.52 deleterious(0.05) probably_damaging(0.999) TCGA-77-A5G6-01 4 55155055 55155055 A G PDGFRA Missense_Mutation p.T922A 0.56 tolerated(0.12) benign(0.171) TCGA-77-A5G6-01 4 57181486 57181486 G A KIAA1211 Silent p.P606P 0.25 TCGA-77-A5G6-01 4 57182456 57182456 C A KIAA1211 Missense_Mutation p.P930T 0.45 tolerated(0.41) possibly_damaging(0.803) TCGA-77-A5G6-01 4 57182457 57182457 C A KIAA1211 Missense_Mutation p.P930H 0.45 tolerated(0.1) probably_damaging(0.95) TCGA-77-A5G6-01 4 57907038 57907038 C A IGFBP7 Missense_Mutation p.L179F 0.39 deleterious(0) probably_damaging(0.993) TCGA-77-A5G6-01 4 62758373 62758373 G T LPHN3 Splice_Site p.X426_splice 0.34 TCGA-77-A5G6-01 4 6304327 6304327 G T WFS1 3'UTR 0.62 TCGA-77-A5G6-01 4 6383599 6383599 G A PPP2R2C 5'Flank 0.40 TCGA-77-A5G6-01 4 71020062 71020062 T A C4orf40 5'UTR 0.79 TCGA-77-A5G6-01 4 80328001 80328001 G T GK2 Missense_Mutation p.P452T 0.67 tolerated(0.6) benign(0.012) TCGA-77-A5G6-01 4 983447 983447 A T SLC26A1 Missense_Mutation p.L427Q 0.50 deleterious(0) probably_damaging(1) TCGA-77-A5G6-01 4 985391 985392 - T SLC26A1 Frame_Shift_Ins p.R34Kfs*114 0.39 TCGA-77-A5G6-01 5 118484962 118484962 G T DMXL1 Missense_Mutation p.R1147I 0.63 deleterious(0) possibly_damaging(0.812) TCGA-77-A5G6-01 5 127516681 127516681 G T SLC12A2 Silent p.R1069R 0.74 TCGA-77-A5G6-01 5 127627249 127627249 T C FBN2 Silent p.V2088V 0.74 TCGA-77-A5G6-01 5 128302237 128302237 A T SLC27A6 Missense_Mutation p.N136I 0.62 deleterious(0) probably_damaging(1) TCGA-77-A5G6-01 5 132270422 132270422 C A AFF4 Missense_Mutation p.G112V 0.68 tolerated(0.11) probably_damaging(1) TCGA-77-A5G6-01 5 13737604 13737604 C A DNAH5 Nonsense_Mutation p.E3738* 0.51 TCGA-77-A5G6-01 5 13737605 13737605 C A DNAH5 Splice_Site p.X3738_splice 0.51 TCGA-77-A5G6-01 5 140480432 140480432 G T PCDHB3 Missense_Mutation p.V67L 0.69 tolerated_low_confidence(0.15) benign(0.036) TCGA-77-A5G6-01 5 140746010 140746010 C A PCDHGA5 Missense_Mutation p.L705M 0.66 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-77-A5G6-01 5 141242758 141242758 T G PCDH1 Intron 0.67 TCGA-77-A5G6-01 5 14711235 14711235 G A ANKH 3'UTR 0.15 TCGA-77-A5G6-01 5 156378552 156378552 G T TIMD4 Missense_Mutation p.P217H 0.62 deleterious(0.02) possibly_damaging(0.846) TCGA-77-A5G6-01 5 169474557 169474557 G T DOCK2 Missense_Mutation p.R1337M 0.80 deleterious(0) probably_damaging(0.996) TCGA-77-A5G6-01 5 176026817 176026817 G T GPRIN1 Missense_Mutation p.P7T 0.56 deleterious(0.05) probably_damaging(0.998) TCGA-77-A5G6-01 5 179200948 179200948 C T MAML1 Silent p.S707S 0.60 TCGA-77-A5G6-01 5 181687 181687 C T PLEKHG4B Silent p.V1131V 0.28 TCGA-77-A5G6-01 5 23527446 23527446 G A PRDM9 Missense_Mutation p.C750Y 0.47 deleterious(0) probably_damaging(1) TCGA-77-A5G6-01 5 31526663 31526663 C A DROSHA Missense_Mutation p.C126F 0.48 deleterious_low_confidence(0.05) benign(0.258) TCGA-77-A5G6-01 5 32388729 32388729 C A ZFR Missense_Mutation p.A732S 0.30 tolerated(0.4) unknown(0) TCGA-77-A5G6-01 5 33596127 33596127 G T ADAMTS12 Missense_Mutation p.R856S 0.09 tolerated(0.62) benign(0.03) TCGA-77-A5G6-01 5 33937484 33937484 G T RXFP3 Silent p.S213S 0.35 TCGA-77-A5G6-01 5 37184975 37184975 C A C5orf42 Nonsense_Mutation p.G1466* 0.54 TCGA-77-A5G6-01 5 40959596 40959596 G T C7 Missense_Mutation p.C512F 0.48 deleterious(0) probably_damaging(0.999) TCGA-77-A5G6-01 5 45353334 45353334 T C HCN1 Silent p.E415E 0.35 TCGA-77-A5G6-01 5 5239346 5239346 C T ADAMTS16 Missense_Mutation p.T746M 0.43 tolerated(0.1) benign(0.067) TCGA-77-A5G6-01 5 68565039 68565039 T C CDK7 Silent p.P211P 0.39 TCGA-77-A5G6-01 5 79855443 79855443 C T ANKRD34B Silent p.E132E 0.69 TCGA-77-A5G6-01 6 102516269 102516269 G T GRIK2 Missense_Mutation p.K870N 0.55 tolerated(0.12) benign(0.104) TCGA-77-A5G6-01 6 117686282 117686282 G C ROS1 Missense_Mutation p.P1020R 0.12 deleterious(0) probably_damaging(1) TCGA-77-A5G6-01 6 123824946 123824946 T A TRDN Silent p.V237V 0.61 TCGA-77-A5G6-01 6 132694085 132694085 C A MOXD1 Missense_Mutation p.A155S 0.62 tolerated(0.85) benign(0.003) TCGA-77-A5G6-01 6 132859947 132859947 C A TAAR9 Missense_Mutation p.N173K 0.15 deleterious(0.04) possibly_damaging(0.542) TCGA-77-A5G6-01 6 136599571 136599571 A G BCLAF1 Missense_Mutation p.Y150H 0.19 tolerated_low_confidence(0.31) unknown(0) TCGA-77-A5G6-01 6 136682233 136682233 C A MAP7 Missense_Mutation p.E559D 0.18 deleterious(0.02) unknown(0) TCGA-77-A5G6-01 6 152265592 152265592 C A ESR1 Missense_Mutation p.L349M 0.09 tolerated(0.2) probably_damaging(0.96) TCGA-77-A5G6-01 6 155136877 155136877 A T SCAF8 Missense_Mutation p.Q483L 0.26 deleterious(0) probably_damaging(0.997) TCGA-77-A5G6-01 6 159655236 159655236 C A FNDC1 Missense_Mutation p.A1231D 0.67 deleterious_low_confidence(0.01) unknown(0) TCGA-77-A5G6-01 6 160494792 160494792 G T IGF2R Nonsense_Mutation p.E1651* 0.68 TCGA-77-A5G6-01 6 165832261 165832261 T C PDE10A Missense_Mutation p.Y287C 0.48 deleterious(0) possibly_damaging(0.9) TCGA-77-A5G6-01 6 168445548 168445548 A C KIF25 Missense_Mutation p.S343R 0.30 tolerated(0.27) possibly_damaging(0.666) TCGA-77-A5G6-01 6 25726590 25726590 A T HIST1H2AA Missense_Mutation p.L56I 0.38 tolerated_low_confidence(0.05) probably_damaging(0.92) TCGA-77-A5G6-01 6 26388347 26388347 G T BTN2A2 Missense_Mutation p.R183S 0.25 tolerated(0.09) possibly_damaging(0.728) TCGA-77-A5G6-01 6 26452217 26452217 C A BTN3A3 Missense_Mutation p.L445I 0.18 deleterious(0.01) benign(0.438) TCGA-77-A5G6-01 6 292561 292561 G T DUSP22 Splice_Site p.X7_splice 0.14 TCGA-77-A5G6-01 6 29429929 29429929 T C OR2H1 Missense_Mutation p.L128P 0.48 deleterious(0) probably_damaging(0.982) TCGA-77-A5G6-01 6 2948625 2948626 - C SERPINB6 Frame_Shift_Ins p.R348Pfs*46 0.29 TCGA-77-A5G6-01 6 30691340 30691340 C T TUBB Silent p.F167F 0.25 TCGA-77-A5G6-01 6 31746993 31746993 G A VARS Silent p.S1159S 0.32 TCGA-77-A5G6-01 6 32803137 32803137 C A TAP2 Splice_Site p.X247_splice 0.28 TCGA-77-A5G6-01 6 348140 348140 G T DUSP22 Missense_Mutation p.A101S 0.23 deleterious(0) probably_damaging(1) TCGA-77-A5G6-01 6 35716655 35716655 G C ARMC12 3'UTR 0.31 TCGA-77-A5G6-01 6 39073351 39073351 C A SAYSD1 Missense_Mutation p.G137W 0.21 deleterious(0) probably_damaging(1) TCGA-77-A5G6-01 6 39073468 39073468 G A SAYSD1 Silent p.L98L 0.49 TCGA-77-A5G6-01 6 42796703 42796703 G T GLTSCR1L Missense_Mutation p.G211V 0.32 deleterious(0) possibly_damaging(0.71) TCGA-77-A5G6-01 6 70856590 70856590 C G COL19A1 Missense_Mutation p.P604A 0.39 tolerated(0.06) probably_damaging(0.999) TCGA-77-A5G6-01 6 70992714 70992714 C T COL9A1 Intron 0.50 TCGA-77-A5G6-01 6 71234985 71234985 G T FAM135A Missense_Mutation p.R733L 0.22 deleterious(0.01) benign(0.166) TCGA-77-A5G6-01 6 74063100 74063100 C T DPPA5 Silent p.G98G 0.53 TCGA-77-A5G6-01 6 83866959 83866959 C A DOPEY1 Missense_Mutation p.F2221L 0.25 deleterious(0) probably_damaging(0.97) TCGA-77-A5G6-01 6 84233621 84233621 G T PRSS35 Missense_Mutation p.C154F 0.40 deleterious(0) probably_damaging(1) TCGA-77-A5G6-01 6 86200238 86200238 G - NT5E Frame_Shift_Del p.E409Rfs*15 0.32 TCGA-77-A5G6-01 6 88854073 88854073 G T CNR1 Silent p.R307R 0.61 TCGA-77-A5G6-01 6 96652032 96652032 C A FUT9 Missense_Mutation p.A334E 0.21 tolerated(0.09) possibly_damaging(0.889) TCGA-77-A5G6-01 7 100211227 100211227 G T MOSPD3 Missense_Mutation p.A137S 0.38 tolerated(0.19) benign(0.146) TCGA-77-A5G6-01 7 100695137 100695137 C A MUC17 Silent p.R4333R 0.33 TCGA-77-A5G6-01 7 100807649 100807649 A T VGF Missense_Mutation p.L159Q 0.43 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-77-A5G6-01 7 126883088 126883088 C A GRM8 Missense_Mutation p.K57N 0.42 deleterious(0.03) benign(0.023) TCGA-77-A5G6-01 7 127670264 127670264 C T LRRC4 Missense_Mutation p.E144K 0.26 tolerated(0.13) benign(0.062) TCGA-77-A5G6-01 7 128355475 128355475 G C FAM71F1 5'UTR 0.27 TCGA-77-A5G6-01 7 132937881 132937881 G A EXOC4 Silent p.G8G 0.22 TCGA-77-A5G6-01 7 137304604 137304604 G C DGKI Missense_Mutation p.P320R 0.46 deleterious(0) probably_damaging(1) TCGA-77-A5G6-01 7 137801388 137801388 C A AKR1D1 Missense_Mutation p.P321T 0.42 deleterious(0.01) probably_damaging(1) TCGA-77-A5G6-01 7 141722080 141722080 C T MGAM Silent p.S241S 0.54 TCGA-77-A5G6-01 7 141755412 141755412 C A MGAM Silent p.S1123S 0.44 TCGA-77-A5G6-01 7 142378630 142378630 T A MTRNR2L6 3'Flank 0.40 TCGA-77-A5G6-01 7 142498898 142498898 G A TRBC2 Missense_Mutation p.D59N 0.15 deleterious(0) probably_damaging(1) TCGA-77-A5G6-01 7 142612661 142612661 C A TRPV5 Silent p.L400L 0.21 TCGA-77-A5G6-01 7 142919579 142919579 G A TAS2R40 Silent p.R136R 0.44 TCGA-77-A5G6-01 7 150034292 150034292 G A LRRC61 Silent p.Q114Q 0.45 TCGA-77-A5G6-01 7 150554644 150554644 C A AOC1 Missense_Mutation p.H362Q 0.26 tolerated(0.16) benign(0.41) TCGA-77-A5G6-01 7 150558292 150558292 G T AOC1 Missense_Mutation p.V751L 0.19 deleterious(0.01) benign(0.006) TCGA-77-A5G6-01 7 21781656 21781656 C A DNAH11 Missense_Mutation p.L2683I 0.38 benign(0.031) TCGA-77-A5G6-01 7 29726969 29726969 G T DPY19L2P3 RNA 0.41 TCGA-77-A5G6-01 7 30795336 30795336 G T INMT Missense_Mutation p.V221L 0.38 tolerated(0.27) benign(0.081) TCGA-77-A5G6-01 7 34977635 34977635 T C DPY19L1 Silent p.L614L 0.45 TCGA-77-A5G6-01 7 38502698 38502698 G T AMPH Silent p.L255L 0.37 TCGA-77-A5G6-01 7 43484596 43484596 G T HECW1 Missense_Mutation p.D609Y 0.38 deleterious_low_confidence(0.01) benign(0.281) TCGA-77-A5G6-01 7 50686944 50686944 C A GRB10 Nonsense_Mutation p.E234* 0.44 TCGA-77-A5G6-01 7 5104547 5104547 G C RBAK Missense_Mutation p.C487S 0.56 deleterious(0) probably_damaging(0.999) TCGA-77-A5G6-01 7 5540399 5540399 G A FBXL18 Missense_Mutation p.R501C 0.31 deleterious(0) probably_damaging(0.96) TCGA-77-A5G6-01 7 5545191 5545191 C G FBXL18 Missense_Mutation p.G30A 0.51 tolerated_low_confidence(0.15) benign(0.204) TCGA-77-A5G6-01 7 71252661 71252661 T C CALN1 3'UTR 0.24 TCGA-77-A5G6-01 7 80141158 80141158 G T GNAT3 Silent p.R29R 0.32 TCGA-77-A5G6-01 7 813751 813751 G T HEATR2 Silent p.A666A 0.48 TCGA-77-A5G6-01 7 87179304 87179304 C G ABCB1 Missense_Mutation p.V473L 0.43 deleterious(0) possibly_damaging(0.756) TCGA-77-A5G6-01 7 87179305 87179305 C A ABCB1 Silent p.V472V 0.42 TCGA-77-A5G6-01 7 891091 891091 G A SUN1 Silent p.S243S 0.39 TCGA-77-A5G6-01 7 94947686 94947686 G A PON1 Nonsense_Mutation p.R32* 0.34 TCGA-77-A5G6-01 7 98574233 98574233 G A TRRAP Missense_Mutation p.R2689Q 0.33 benign(0.012) TCGA-77-A5G6-01 8 106814023 106814023 C A ZFPM2 Nonsense_Mutation p.C571* 0.35 TCGA-77-A5G6-01 8 10892802 10892802 C A XKR6 Intron 0.64 TCGA-77-A5G6-01 8 110471881 110471881 A - PKHD1L1 Frame_Shift_Del p.N2355Tfs*2 0.39 TCGA-77-A5G6-01 8 113569134 113569134 G T CSMD3 Nonsense_Mutation p.Y1364* 0.33 TCGA-77-A5G6-01 8 113694713 113694713 C T CSMD3 Missense_Mutation p.D879N 0.29 deleterious(0.05) possibly_damaging(0.881) TCGA-77-A5G6-01 8 11412322 11412322 C G BLK Missense_Mutation p.C181W 0.69 deleterious(0) possibly_damaging(0.591) TCGA-77-A5G6-01 8 116599698 116599698 G A TRPS1 Missense_Mutation p.H744Y 0.19 deleterious_low_confidence(0.05) benign(0.215) TCGA-77-A5G6-01 8 118832034 118832034 C A EXT1 Splice_Site p.X473_splice 0.35 TCGA-77-A5G6-01 8 120774812 120774812 C A TAF2 Missense_Mutation p.A801S 0.29 tolerated(0.17) benign(0.073) TCGA-77-A5G6-01 8 124987421 124987421 C T FER1L6 Silent p.L186L 0.41 TCGA-77-A5G6-01 8 133044273 133044273 G T OC90 Missense_Mutation p.L296M 0.36 tolerated(0.28) possibly_damaging(0.822) TCGA-77-A5G6-01 8 139268934 139268934 C A FAM135B Missense_Mutation p.Q122H 0.34 tolerated(0.33) benign(0.078) TCGA-77-A5G6-01 8 143996544 143996544 G T CYP11B2 Silent p.A171A 0.52 TCGA-77-A5G6-01 8 143999088 143999088 T A CYP11B2 Missense_Mutation p.R57W 0.40 deleterious(0) probably_damaging(0.985) TCGA-77-A5G6-01 8 145692703 145692703 G T KIFC2 Missense_Mutation p.V150F 0.48 deleterious_low_confidence(0.01) benign(0.312) TCGA-77-A5G6-01 8 33369966 33369966 C G TTI2 Missense_Mutation p.G56R 0.62 tolerated(0.63) benign(0.007) TCGA-77-A5G6-01 8 37823846 37823846 C G ADRB3 Missense_Mutation p.V48L 0.76 deleterious(0.02) benign(0.156) TCGA-77-A5G6-01 8 42040299 42040299 C A PLAT Missense_Mutation p.K247N 0.35 deleterious(0.01) probably_damaging(0.968) TCGA-77-A5G6-01 8 42611358 42611358 G T CHRNA6 Missense_Mutation p.H328Q 0.40 deleterious(0) probably_damaging(1) TCGA-77-A5G6-01 8 52321156 52321156 G A PXDNL Nonsense_Mutation p.Q1010* 0.54 TCGA-77-A5G6-01 8 62430663 62430663 G T ASPH Silent p.A640A 0.38 TCGA-77-A5G6-01 8 75924745 75924745 G T CRISPLD1 Missense_Mutation p.L112F 0.43 deleterious(0.01) benign(0.215) TCGA-77-A5G6-01 8 76471257 76471257 G A HNF4G Missense_Mutation p.E360K 0.11 deleterious(0) probably_damaging(0.948) TCGA-77-A5G6-01 8 77620211 77620211 C A ZFHX4 Nonsense_Mutation p.Y1007* 0.34 TCGA-77-A5G6-01 8 81888785 81888785 C A PAG1 Missense_Mutation p.R431S 0.38 deleterious(0) probably_damaging(0.998) TCGA-77-A5G6-01 8 82392706 82392706 C A FABP4 Silent p.L67L 0.32 TCGA-77-A5G6-01 8 93004094 93004094 C A RUNX1T1 Missense_Mutation p.R266I 0.36 deleterious(0.04) benign(0.359) TCGA-77-A5G6-01 9 120476042 120476042 C A TLR4 Missense_Mutation p.L546I 0.65 deleterious(0) probably_damaging(0.999) TCGA-77-A5G6-01 9 120476255 120476255 G T TLR4 Missense_Mutation p.G617C 0.54 deleterious(0.01) possibly_damaging(0.691) TCGA-77-A5G6-01 9 125330695 125330695 C G OR1L8 Missense_Mutation p.R21P 0.30 deleterious(0.02) possibly_damaging(0.752) TCGA-77-A5G6-01 9 126134575 126134575 C A CRB2 Silent p.P852P 0.66 TCGA-77-A5G6-01 9 131197992 131197992 G T CERCAM Silent p.L532L 0.83 TCGA-77-A5G6-01 9 139391206 139391206 T A NOTCH1 Missense_Mutation p.S2329C 0.68 tolerated(0.09) benign(0.401) TCGA-77-A5G6-01 9 27204940 27204940 G A TEK Silent p.L747L 0.65 TCGA-77-A5G6-01 9 72520991 72520991 C A C9orf135 Missense_Mutation p.A210D 0.66 tolerated(0.08) possibly_damaging(0.801) TCGA-77-A5G6-01 9 90345371 90345371 G C CTSL Missense_Mutation p.S287T 0.65 deleterious(0.04) benign(0) TCGA-77-A5G6-01 9 91996095 91996095 G A SEMA4D Missense_Mutation p.P538L 0.67 tolerated(0.15) benign(0.034) TCGA-77-A5G6-01 X 102968670 102968670 C G TMEM31 Missense_Mutation p.P84R 0.29 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-77-A5G6-01 X 103495489 103495489 G A ESX1 Missense_Mutation p.P214L 0.83 tolerated(0.08) possibly_damaging(0.908) TCGA-77-A5G6-01 X 105875873 105875873 G A CXorf57 Missense_Mutation p.R333Q 0.15 tolerated(0.16) benign(0.338) TCGA-77-A5G6-01 X 114245250 114245250 C A IL13RA2 Missense_Mutation p.K221N 0.79 tolerated(0.45) benign(0.004) TCGA-77-A5G6-01 X 114953360 114953360 C A RP1-241P17.4 Missense_Mutation p.G64W 0.85 deleterious(0.03) benign(0.27) TCGA-77-A5G6-01 X 119512614 119512614 G - ATP1B4 Frame_Shift_Del p.G300Afs*3 0.43 TCGA-77-A5G6-01 X 130222658 130222658 G T ARHGAP36 Nonsense_Mutation p.E515* 0.78 TCGA-77-A5G6-01 X 136652126 136652126 C A ZIC3 Missense_Mutation p.A434D 0.82 tolerated(0.64) benign(0.034) TCGA-77-A5G6-01 X 152770277 152770277 G T BGN Missense_Mutation p.C63F 0.85 deleterious(0) probably_damaging(1) TCGA-77-A5G6-01 X 153136252 153136252 G T L1CAM Silent p.V229V 0.66 TCGA-77-A5G6-01 X 52682533 52682533 G A SSX7 5'UTR 0.81 TCGA-77-A5G6-01 X 63412002 63412002 C A AMER1 Nonsense_Mutation p.E389* 0.91 TCGA-77-A5G6-01 X 7811628 7811628 A T VCX Silent p.A64A 0.36 TCGA-77-A5G7-01 10 100380445 100380445 T C HPSE2 Silent p.P373P 0.37 TCGA-77-A5G7-01 10 102256948 102256948 G A SEC31B Missense_Mutation p.R694W 0.18 deleterious(0.05) benign(0.008) TCGA-77-A5G7-01 10 124896922 124896922 G A HMX3 Missense_Mutation p.R250H 0.23 deleterious(0) probably_damaging(0.999) TCGA-77-A5G7-01 10 31810063 31810063 T G ZEB1 Nonsense_Mutation p.Y601* 0.33 TCGA-77-A5G7-01 10 55582332 55582332 A G PCDH15 Silent p.P1720P 0.16 TCGA-77-A5G7-01 10 64403638 64403638 C T ZNF365 Intron 0.30 TCGA-77-A5G7-01 10 7409730 7409730 A C SFMBT2 Missense_Mutation p.L106R 0.16 deleterious(0) probably_damaging(1) TCGA-77-A5G7-01 10 93572826 93572830 CATAA - TNKS2 Frame_Shift_Del p.H96Cfs*8 0.38 TCGA-77-A5G7-01 11 33308344 33308344 G A HIPK3 Silent p.K128K 0.15 TCGA-77-A5G7-01 11 55890267 55890267 T C OR8H3 Missense_Mutation p.L140P 0.32 deleterious(0.03) benign(0.164) TCGA-77-A5G7-01 11 57367462 57367462 A G SERPING1 Silent p.L54L 0.33 TCGA-77-A5G7-01 11 58916367 58916367 T C FAM111A Missense_Mutation p.S8P 0.20 tolerated(0.11) benign(0.118) TCGA-77-A5G7-01 11 64496482 64496482 C A RASGRP2 Missense_Mutation p.D542Y 0.42 deleterious(0) probably_damaging(0.951) TCGA-77-A5G7-01 11 85375301 85375301 T A CREBZF Missense_Mutation p.T207S 0.31 tolerated(0.33) probably_damaging(0.931) TCGA-77-A5G7-01 11 862657 862657 C T TSPAN4 Silent p.L57L 0.41 TCGA-77-A5G7-01 11 95578276 95578276 C T MTMR2 Silent p.G409G 0.18 TCGA-77-A5G7-01 12 21757408 21757408 T C GYS2 Missense_Mutation p.K40R 0.45 tolerated(0.23) possibly_damaging(0.844) TCGA-77-A5G7-01 12 21997729 21997729 G A ABCC9 Missense_Mutation p.L1073F 0.21 deleterious(0) probably_damaging(0.979) TCGA-77-A5G7-01 12 27830003 27830003 A C PPFIBP1 Intron 0.33 TCGA-77-A5G7-01 12 52699491 52699491 G T KRT86 Silent p.L315L 0.25 TCGA-77-A5G7-01 12 72056986 72056988 CTC - ZFC3H1 In_Frame_Del p.E135del 0.17 TCGA-77-A5G7-01 12 7843026 7843026 G T GDF3 Missense_Mutation p.F181L 0.09 tolerated(0.1) possibly_damaging(0.824) TCGA-77-A5G7-01 13 113055452 113055452 G T SPACA7 Missense_Mutation p.G140V 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-77-A5G7-01 13 19748222 19748222 C T TUBA3C Silent p.L378L 0.32 TCGA-77-A5G7-01 14 23846483 23846483 G T CMTM5 Missense_Mutation p.R8L 0.28 tolerated_low_confidence(0.1) benign(0.013) TCGA-77-A5G7-01 14 51410961 51410961 A C PYGL Missense_Mutation p.F54C 0.07 tolerated(0.08) probably_damaging(0.999) TCGA-77-A5G7-01 15 22369031 22369031 C G OR4M2 Silent p.G152G 0.13 TCGA-77-A5G7-01 15 23931965 23931965 T G NDN Missense_Mutation p.K134Q 0.09 deleterious(0.04) probably_damaging(0.999) TCGA-77-A5G7-01 15 41679668 41679668 C T NDUFAF1 Missense_Mutation p.E320K 0.24 tolerated(0.29) benign(0.007) TCGA-77-A5G7-01 15 50190399 50190399 C A ATP8B4 Missense_Mutation p.C780F 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-77-A5G7-01 15 55612563 55612563 A G PIGB Missense_Mutation p.D85G 0.26 deleterious(0) possibly_damaging(0.856) TCGA-77-A5G7-01 15 75015241 75015241 C T CYP1A1 Missense_Mutation p.M66I 0.23 deleterious(0.01) benign(0.033) TCGA-77-A5G7-01 15 86260586 86260586 A G AKAP13 Missense_Mutation p.N1938S 0.23 tolerated(0.06) possibly_damaging(0.835) TCGA-77-A5G7-01 16 21288753 21288753 G A CRYM Missense_Mutation p.A108V 0.14 tolerated(0.08) benign(0.234) TCGA-77-A5G7-01 16 319298 319298 A G RGS11 Silent p.C458C 0.33 TCGA-77-A5G7-01 16 56660944 56660944 A T MT1E 3'UTR 0.14 TCGA-77-A5G7-01 16 68014043 68014043 G A DPEP3 Missense_Mutation p.R106W 0.28 deleterious(0.02) benign(0.046) TCGA-77-A5G7-01 16 71318242 71318242 C G CMTR2 Missense_Mutation p.G528R 0.16 tolerated(0.7) benign(0.019) TCGA-77-A5G7-01 16 84623714 84623714 T C COTL1 Silent p.V105V 0.32 TCGA-77-A5G7-01 16 8993485 8993485 T C USP7 Silent p.L813L 0.12 TCGA-77-A5G7-01 17 12883516 12883516 G T ARHGAP44 Silent p.P635P 0.12 TCGA-77-A5G7-01 17 12883523 12883523 G A ARHGAP44 Missense_Mutation p.D638N 0.09 tolerated(0.17) benign(0.069) TCGA-77-A5G7-01 17 28380770 28380770 A T EFCAB5 Nonsense_Mutation p.R600* 0.24 TCGA-77-A5G7-01 17 29632456 29632456 G T EVI2B Missense_Mutation p.Q58K 0.15 tolerated(0.05) possibly_damaging(0.486) TCGA-77-A5G7-01 17 42818802 42818802 G C DBF4B Missense_Mutation p.G271A 0.25 tolerated(0.11) benign(0.218) TCGA-77-A5G7-01 17 60637377 60637377 G A TLK2 Missense_Mutation p.A241T 0.06 tolerated(0.23) benign(0.02) TCGA-77-A5G7-01 17 62500107 62500107 T C DDX5 Silent p.T145T 0.32 TCGA-77-A5G7-01 17 6610053 6610053 G T SLC13A5 Silent p.G92G 0.26 TCGA-77-A5G7-01 17 7578206 7578217 TATGTCGAAAAG - TP53 In_Frame_Del p.T211_H214del 0.28 TCGA-77-A5G7-01 18 28711600 28711600 G T DSC1 Missense_Mutation p.A815E 0.33 deleterious(0.01) benign(0.413) TCGA-77-A5G7-01 18 33691102 33691102 C G SLC39A6 Missense_Mutation p.G679R 0.28 deleterious(0) probably_damaging(1) TCGA-77-A5G7-01 18 61154286 61154286 C T SERPINB5 Silent p.L92L 0.32 TCGA-77-A5G7-01 19 1506627 1506627 C T ADAMTSL5 Missense_Mutation p.R359H 0.11 deleterious(0.02) benign(0.21) TCGA-77-A5G7-01 19 2116239 2116239 G A AP3D1 Silent p.P680P 0.49 TCGA-77-A5G7-01 19 23406571 23406571 T C ZNF724P Missense_Mutation p.N159S 0.18 tolerated(0.09) possibly_damaging(0.678) TCGA-77-A5G7-01 19 36940626 36940626 G A ZNF566 Silent p.F171F 0.24 TCGA-77-A5G7-01 1 102269934 102269934 G T OLFM3 Missense_Mutation p.P413T 0.34 deleterious(0) probably_damaging(0.999) TCGA-77-A5G7-01 1 103491879 103491879 C T COL11A1 Missense_Mutation p.E264K 0.37 benign(0.168) TCGA-77-A5G7-01 1 14107940 14107940 A C PRDM2 Missense_Mutation p.K1217T 0.35 unknown(0) TCGA-77-A5G7-01 1 145441180 145441180 T G TXNIP Intron 0.27 TCGA-77-A5G7-01 1 172411384 172411384 T C PIGC Missense_Mutation p.I127V 0.06 tolerated(0.37) benign(0.002) TCGA-77-A5G7-01 1 18808346 18808346 G A KLHDC7A Missense_Mutation p.D291N 0.11 deleterious(0.04) benign(0.139) TCGA-77-A5G7-01 1 197029587 197029587 C A F13B Missense_Mutation p.Q238H 0.15 tolerated(0.56) possibly_damaging(0.861) TCGA-77-A5G7-01 1 197029589 197029589 G T F13B Missense_Mutation p.Q238K 0.15 tolerated(0.08) probably_damaging(0.995) TCGA-77-A5G7-01 1 198498228 198498228 G T ATP6V1G3 Silent p.R56R 0.21 TCGA-77-A5G7-01 1 204092918 204092918 T A SOX13 Missense_Mutation p.I454N 0.09 deleterious(0) probably_damaging(1) TCGA-77-A5G7-01 1 222892290 222892290 G A BROX Missense_Mutation p.R42Q 0.07 tolerated(0.07) benign(0.004) TCGA-77-A5G7-01 1 231004058 231004058 G A C1orf198 Silent p.D67D 0.23 TCGA-77-A5G7-01 1 23908028 23908028 A G MDS2 RNA 0.25 TCGA-77-A5G7-01 1 244816608 244816608 G A DESI2 5'UTR 0.13 TCGA-77-A5G7-01 1 247492838 247492838 T A ZNF496 Missense_Mutation p.S15C 0.07 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-77-A5G7-01 1 248512615 248512615 C A OR14C36 Missense_Mutation p.P180H 0.28 deleterious(0) probably_damaging(0.998) TCGA-77-A5G7-01 1 248616704 248616704 C A OR2T2 Silent p.A202A 0.18 TCGA-77-A5G7-01 1 36915887 36915887 C G OSCP1 Missense_Mutation p.Q28H 0.28 tolerated(0.16) probably_damaging(0.985) TCGA-77-A5G7-01 1 6638879 6638879 G C TAS1R1 Silent p.L587L 0.08 TCGA-77-A5G7-01 1 70555456 70555456 G T LRRC7 Missense_Mutation p.S1462I 0.07 deleterious(0) probably_damaging(0.998) TCGA-77-A5G7-01 1 94522185 94522185 C T ABCA4 Missense_Mutation p.R785H 0.06 tolerated(0.47) benign(0.066) TCGA-77-A5G7-01 20 56078562 56078562 G T CTCFL Silent p.T590T 0.38 TCGA-77-A5G7-01 20 57769219 57769219 A T ZNF831 Missense_Mutation p.R1049W 0.11 tolerated(0.08) benign(0.012) TCGA-77-A5G7-01 21 18931434 18931434 A G CXADR Missense_Mutation p.T186A 0.35 tolerated(1) benign(0) TCGA-77-A5G7-01 21 22664432 22664432 G T NCAM2 Missense_Mutation p.A164S 0.15 tolerated(0.7) benign(0.021) TCGA-77-A5G7-01 22 24574026 24574026 C T CABIN1 Silent p.A2175A 0.25 TCGA-77-A5G7-01 2 141274541 141274541 C - LRP1B Frame_Shift_Del p.C2689Ffs*8 0.15 TCGA-77-A5G7-01 2 141709502 141709502 T C LRP1B Silent p.P965P 0.35 TCGA-77-A5G7-01 2 166172078 166172078 G T SCN2A Missense_Mutation p.S494I 0.25 tolerated(0.06) probably_damaging(0.999) TCGA-77-A5G7-01 2 188247955 188247955 T A CALCRL Silent p.T43T 0.19 TCGA-77-A5G7-01 2 189599641 189599641 C T DIRC1 Missense_Mutation p.E3K 0.12 tolerated_low_confidence(0.15) possibly_damaging(0.486) TCGA-77-A5G7-01 2 219339389 219339389 T C USP37 Missense_Mutation p.M755V 0.30 tolerated(0.45) benign(0.001) TCGA-77-A5G7-01 2 37586748 37586748 T A QPCT Missense_Mutation p.L98H 0.09 deleterious(0) probably_damaging(1) TCGA-77-A5G7-01 2 79313568 79313568 G T REG1B Silent p.A82A 0.22 TCGA-77-A5G7-01 2 90211745 90211745 A T IGKV3D-11 Missense_Mutation p.E2D 0.18 tolerated(0.42) benign(0.32) TCGA-77-A5G7-01 2 97364868 97364868 T C FER1L5 RNA 0.55 TCGA-77-A5G7-01 3 101574686 101574686 T A NFKBIZ Missense_Mutation p.N588K 0.08 tolerated(0.24) benign(0.029) TCGA-77-A5G7-01 3 123022987 123022987 C T ADCY5 Missense_Mutation p.R829Q 0.21 tolerated(1) benign(0.003) TCGA-77-A5G7-01 3 142141556 142141556 T C XRN1 Missense_Mutation p.I279V 0.09 deleterious(0.03) possibly_damaging(0.638) TCGA-77-A5G7-01 3 15497991 15497991 G T COLQ Missense_Mutation p.D350E 0.08 deleterious(0.02) unknown(0) TCGA-77-A5G7-01 3 164777800 164777800 C A SI Missense_Mutation p.A346S 0.04 tolerated(0.39) benign(0.213) TCGA-77-A5G7-01 4 114276997 114276997 G T ANK2 Missense_Mutation p.G2408V 0.23 probably_damaging(0.954) TCGA-77-A5G7-01 4 3948636 3948636 A G FAM86EP Intron 0.45 TCGA-77-A5G7-01 4 52861393 52861393 T A LRRC66 Missense_Mutation p.R599W 0.05 tolerated(0.06) benign(0.06) TCGA-77-A5G7-01 4 52861394 52861394 C A LRRC66 Missense_Mutation p.Q598H 0.05 tolerated(0.19) benign(0.1) TCGA-77-A5G7-01 4 56770676 56770676 G T EXOC1 3'UTR 0.41 TCGA-77-A5G7-01 4 628609 628609 A G PDE6B Silent p.E204E 0.41 TCGA-77-A5G7-01 5 40767744 40767744 G C PRKAA1 Silent p.L230L 0.06 TCGA-77-A5G7-01 5 43644791 43644791 A C NNT Missense_Mutation p.T393P 0.11 deleterious(0.01) benign(0.305) TCGA-77-A5G7-01 5 64907534 64907534 G A TRIM23 Missense_Mutation p.H181Y 0.04 deleterious(0) probably_damaging(0.994) TCGA-77-A5G7-01 5 82868298 82868298 G C VCAN Missense_Mutation p.V3267L 0.14 deleterious(0) probably_damaging(0.988) TCGA-77-A5G7-01 5 96232174 96232174 T C ERAP2 Missense_Mutation p.I446T 0.14 deleterious(0) possibly_damaging(0.886) TCGA-77-A5G7-01 6 117631315 117631315 G A ROS1 Silent p.G2121G 0.32 TCGA-77-A5G7-01 6 26247051 26247051 T A HIST1H4G Missense_Mutation p.Y52F 0.24 deleterious(0.02) probably_damaging(0.99) TCGA-77-A5G7-01 6 27799066 27799066 C A HIST1H4K Missense_Mutation p.K80N 0.26 deleterious(0.01) benign(0.329) TCGA-77-A5G7-01 6 36945856 36945856 C A MTCH1 Nonsense_Mutation p.E197* 0.09 TCGA-77-A5G7-01 6 43476650 43476650 C T LRRC73 Missense_Mutation p.G94E 0.17 deleterious(0) probably_damaging(0.998) TCGA-77-A5G7-01 6 49696394 49696394 G C CRISP3 3'UTR 0.16 TCGA-77-A5G7-01 6 56401651 56401651 T C DST Missense_Mutation p.K2943E 0.27 benign(0.346) TCGA-77-A5G7-01 6 87795966 87795966 A C CGA Splice_Site p.X91_splice 0.21 TCGA-77-A5G7-01 7 111503530 111503530 G T DOCK4 Missense_Mutation p.L791M 0.26 deleterious(0) probably_damaging(0.996) TCGA-77-A5G7-01 7 135614590 135614590 G C MTPN 3'UTR 0.19 TCGA-77-A5G7-01 7 142247246 142247246 G T TRBV7-3 Silent p.G70G 0.18 TCGA-77-A5G7-01 7 37136231 37136231 G C ELMO1 Silent p.G431G 0.06 TCGA-77-A5G7-01 7 4273002 4273002 G A SDK1 Silent p.V1981V 0.06 TCGA-77-A5G7-01 7 4900040 4900040 C A PAPOLB Missense_Mutation p.V467F 0.22 deleterious(0) possibly_damaging(0.884) TCGA-77-A5G7-01 8 143618386 143618386 G A BAI1 Silent p.Q1203Q 0.22 TCGA-77-A5G7-01 8 41397507 41397507 G C GINS4 Silent p.V156V 0.12 TCGA-77-A5G7-01 8 87560656 87560656 A G CPNE3 Missense_Mutation p.Y336C 0.10 deleterious(0) probably_damaging(0.988) TCGA-77-A5G7-01 9 123715055 123715055 C G C5 Missense_Mutation p.D1665H 0.13 deleterious(0.02) possibly_damaging(0.614) TCGA-77-A5G7-01 9 137804882 137804882 T C FCN1 Missense_Mutation p.T150A 0.52 deleterious(0) benign(0.316) TCGA-77-A5G7-01 9 27209226 27209226 C T TEK Nonsense_Mutation p.R895* 0.21 TCGA-77-A5G7-01 9 74345726 74345726 G A TMEM2 Silent p.D556D 0.44 TCGA-77-A5G7-01 X 103080673 103080673 A T RAB9B Silent p.G14G 0.47 TCGA-77-A5G7-01 X 22291383 22291383 T C ZNF645 Missense_Mutation p.V92A 0.58 deleterious(0.01) benign(0.003) TCGA-77-A5G7-01 X 82764121 82764121 A T POU3F4 Silent p.T263T 0.60 TCGA-77-A5G8-01 10 115423699 115423699 C - NRAP 5'UTR 0.26 TCGA-77-A5G8-01 10 124392732 124392732 A G DMBT1 Silent p.L2012L 0.55 TCGA-77-A5G8-01 10 37421181 37421181 C A ANKRD30A Missense_Mutation p.P119Q 0.13 deleterious(0) probably_damaging(0.983) TCGA-77-A5G8-01 10 50916590 50916590 G T C10orf53 Missense_Mutation p.C134F 0.39 deleterious_low_confidence(0) possibly_damaging(0.506) TCGA-77-A5G8-01 10 63851751 63851751 C T ARID5B Silent p.H843H 0.08 TCGA-77-A5G8-01 10 69750747 69750747 T A HERC4 Missense_Mutation p.T453S 0.50 tolerated(1) benign(0) TCGA-77-A5G8-01 10 70550964 70550964 G A CCAR1 Missense_Mutation p.D1132N 0.11 tolerated_low_confidence(0.41) unknown(0) TCGA-77-A5G8-01 10 909808 909808 C G LARP4B Missense_Mutation p.G102A 0.11 tolerated(0.4) benign(0.009) TCGA-77-A5G8-01 11 111957631 111957631 G C SDHD 5'UTR 0.19 TCGA-77-A5G8-01 11 113619010 113619010 G C ZW10 Missense_Mutation p.T353R 0.06 tolerated(0.11) benign(0.141) TCGA-77-A5G8-01 11 113849998 113849998 A G HTR3A Missense_Mutation p.Q94R 0.24 deleterious(0) possibly_damaging(0.844) TCGA-77-A5G8-01 11 118455337 118455337 G T ARCN1 Missense_Mutation p.A266S 0.14 tolerated(0.33) benign(0.023) TCGA-77-A5G8-01 11 47726131 47726131 C G AGBL2 Missense_Mutation p.E184Q 0.23 tolerated(0.08) possibly_damaging(0.685) TCGA-77-A5G8-01 11 50003786 50003786 A G OR4C12 Silent p.F84F 0.20 TCGA-77-A5G8-01 11 51411821 51411821 A G OR4A5 Missense_Mutation p.I192T 0.28 tolerated_low_confidence(0.07) benign(0.364) TCGA-77-A5G8-01 11 5461859 5461859 C A OR51I1 Missense_Mutation p.V296L 0.20 tolerated(0.07) benign(0.17) TCGA-77-A5G8-01 11 55321826 55321826 G A OR4C15 Missense_Mutation p.G15E 0.20 deleterious_low_confidence(0) unknown(0) TCGA-77-A5G8-01 11 55541462 55541462 C A OR5D13 Missense_Mutation p.H183Q 0.20 deleterious(0.01) benign(0.213) TCGA-77-A5G8-01 11 55735837 55735842 TGCCAT - OR10AG1 In_Frame_Del p.N33_G34del 0.11 TCGA-77-A5G8-01 11 55873456 55873456 A C OR8H2 Nonstop_Mutation p.*313Sext*? 0.27 TCGA-77-A5G8-01 11 56019938 56019938 C A OR5T3 Missense_Mutation p.P88H 0.13 deleterious(0) probably_damaging(0.998) TCGA-77-A5G8-01 11 64572247 64572247 C T MEN1 Silent p.A469A 0.29 TCGA-77-A5G8-01 11 6648843 6648843 G A DCHS1 Silent p.T1809T 0.20 TCGA-77-A5G8-01 11 67052344 67052344 A G ADRBK1 Missense_Mutation p.M561V 0.37 tolerated(0.49) benign(0.002) TCGA-77-A5G8-01 11 73717301 73717301 C T UCP3 Missense_Mutation p.G84S 0.18 deleterious(0.02) possibly_damaging(0.815) TCGA-77-A5G8-01 11 76063581 76063581 G A PRKRIR Silent p.L205L 0.16 TCGA-77-A5G8-01 11 85437406 85437406 C T SYTL2 Missense_Mutation p.D32N 0.16 tolerated_low_confidence(0.26) benign(0.002) TCGA-77-A5G8-01 11 85445706 85445706 C T SYTL2 Silent p.L221L 0.15 TCGA-77-A5G8-01 11 89883736 89883736 T C NAALAD2 Silent p.I190I 0.29 TCGA-77-A5G8-01 12 100606052 100606052 T A ACTR6 Missense_Mutation p.D197E 0.17 tolerated(0.37) probably_damaging(0.998) TCGA-77-A5G8-01 12 100930725 100930725 G T NR1H4 Splice_Site p.X288_splice 0.14 TCGA-77-A5G8-01 12 104645339 104645339 G T TXNRD1 Missense_Mutation p.E42D 0.23 tolerated_low_confidence(0.36) benign(0.004) TCGA-77-A5G8-01 12 105600970 105600970 C A APPL2 Nonsense_Mutation p.G170* 0.14 TCGA-77-A5G8-01 12 11461763 11461763 G T PRB4 Missense_Mutation p.P52T 0.31 deleterious_low_confidence(0) unknown(0) TCGA-77-A5G8-01 12 13724856 13724856 T C GRIN2B Missense_Mutation p.T685A 0.13 deleterious(0) probably_damaging(0.995) TCGA-77-A5G8-01 12 25261050 25261050 C A LRMP 3'UTR 0.06 TCGA-77-A5G8-01 12 31255394 31255394 G T DDX11 Missense_Mutation p.A769S 0.05 deleterious(0.05) probably_damaging(1) TCGA-77-A5G8-01 12 40637372 40637372 A G LRRK2 Missense_Mutation p.M243V 0.25 deleterious(0) probably_damaging(0.977) TCGA-77-A5G8-01 12 41365275 41365275 C T CNTN1 Intron 0.14 TCGA-77-A5G8-01 12 48080582 48080582 C T RPAP3 Missense_Mutation p.A325T 0.17 deleterious(0) benign(0.124) TCGA-77-A5G8-01 12 52096616 52096616 C A SCN8A Missense_Mutation p.T351K 0.25 deleterious(0) probably_damaging(0.998) TCGA-77-A5G8-01 12 70149175 70149175 A G RAB3IP Missense_Mutation p.D12G 0.37 deleterious_low_confidence(0.02) benign(0.011) TCGA-77-A5G8-01 12 71533561 71533561 G C TSPAN8 Missense_Mutation p.A64G 0.32 deleterious(0.01) possibly_damaging(0.752) TCGA-77-A5G8-01 12 78569209 78569209 T C NAV3 Splice_Site p.X1701_splice 0.35 TCGA-77-A5G8-01 12 81536910 81536910 C A ACSS3 Missense_Mutation p.R269S 0.40 deleterious(0.01) benign(0.262) TCGA-77-A5G8-01 12 9085302 9085302 A C PHC1 Missense_Mutation p.T417P 0.17 deleterious_low_confidence(0) unknown(0) TCGA-77-A5G8-01 12 9349007 9349007 A C PZP Missense_Mutation p.S337R 0.21 tolerated(0.07) benign(0.36) TCGA-77-A5G8-01 13 109610058 109610058 G C MYO16 Missense_Mutation p.D628H 0.33 tolerated(0.07) possibly_damaging(0.657) TCGA-77-A5G8-01 13 113724380 113724380 G C MCF2L Missense_Mutation p.A297P 0.21 deleterious(0) possibly_damaging(0.851) TCGA-77-A5G8-01 13 25480676 25480676 T C CENPJ Silent p.K500K 0.31 TCGA-77-A5G8-01 13 29291946 29291946 C T SLC46A3 Splice_Site p.X63_splice 0.17 TCGA-77-A5G8-01 14 101350937 101350937 G C RTL1 Silent p.L63L 0.31 TCGA-77-A5G8-01 14 101531702 101531702 C T MIR409 RNA 0.23 TCGA-77-A5G8-01 14 105739062 105739062 C A BRF1 Silent p.T145T 0.34 TCGA-77-A5G8-01 14 20502748 20502748 G T OR4K13 Missense_Mutation p.T57K 0.25 deleterious(0) benign(0.138) TCGA-77-A5G8-01 14 20611971 20611971 T C OR4N5 Missense_Mutation p.L26P 0.34 deleterious(0.03) probably_damaging(0.954) TCGA-77-A5G8-01 14 20784634 20784634 T C CCNB1IP1 Missense_Mutation p.I17V 0.32 tolerated(0.3) benign(0) TCGA-77-A5G8-01 14 20859908 20859908 A G TEP1 Silent p.G649G 0.05 TCGA-77-A5G8-01 14 26917158 26917158 G T NOVA1 3'UTR 0.23 TCGA-77-A5G8-01 14 26917170 26917170 C G NOVA1 Missense_Mutation p.G507R 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-77-A5G8-01 14 31619226 31619226 C A HECTD1 Nonsense_Mutation p.E712* 0.21 TCGA-77-A5G8-01 14 31619227 31619227 C A HECTD1 Silent p.P711P 0.21 TCGA-77-A5G8-01 14 31619228 31619228 G A HECTD1 Missense_Mutation p.P711L 0.21 deleterious(0) probably_damaging(0.998) TCGA-77-A5G8-01 14 33293301 33293301 G T AKAP6 Silent p.V2094V 0.35 TCGA-77-A5G8-01 14 35005358 35005358 T C EAPP Silent p.E66E 0.25 TCGA-77-A5G8-01 14 58599993 58599993 T C C14orf37 Missense_Mutation p.Q479R 0.27 tolerated(0.45) benign(0.145) TCGA-77-A5G8-01 14 59931274 59931274 C T GPR135 Missense_Mutation p.R224H 0.16 tolerated(0.06) benign(0.363) TCGA-77-A5G8-01 14 74086569 74086569 T C ACOT6 3'UTR 0.40 TCGA-77-A5G8-01 14 77269739 77269739 C A ANGEL1 Missense_Mutation p.M531I 0.18 tolerated(1) benign(0.002) TCGA-77-A5G8-01 15 102312252 102312252 G T RN7SL209P 3'Flank 0.15 TCGA-77-A5G8-01 15 22473104 22473104 C G IGHV4OR15-8 Missense_Mutation p.W56S 0.04 deleterious(0) probably_damaging(1) TCGA-77-A5G8-01 15 25947188 25947188 G A ATP10A Missense_Mutation p.R879C 0.17 deleterious(0.02) benign(0.027) TCGA-77-A5G8-01 15 28447327 28447327 C T HERC2 Missense_Mutation p.D2517N 0.36 benign(0.031) TCGA-77-A5G8-01 15 33926842 33926842 G T RYR3 Missense_Mutation p.R1028L 0.27 probably_damaging(0.974) TCGA-77-A5G8-01 15 40324424 40324425 - T EIF2AK4 Frame_Shift_Ins p.E1573* 0.18 TCGA-77-A5G8-01 15 45388189 45388189 G A DUOX2 Missense_Mutation p.A1306V 0.16 deleterious(0) possibly_damaging(0.672) TCGA-77-A5G8-01 15 65370339 65370339 G T KBTBD13 Missense_Mutation p.A396S 0.18 tolerated(0.16) benign(0.075) TCGA-77-A5G8-01 15 69329397 69329397 C G NOX5 Silent p.L406L 0.25 TCGA-77-A5G8-01 15 72499160 72499160 T C PKM Missense_Mutation p.N350S 0.15 deleterious(0.03) benign(0.27) TCGA-77-A5G8-01 15 85402600 85402600 C T ALPK3 Missense_Mutation p.P1517L 0.19 tolerated(0.06) benign(0.286) TCGA-77-A5G8-01 15 88472610 88472610 C A NTRK3 Missense_Mutation p.G649C 0.33 deleterious(0.01) benign(0.345) TCGA-77-A5G8-01 16 1278655 1278655 G A TPSB2 Missense_Mutation p.P274S 0.40 deleterious(0) probably_damaging(1) TCGA-77-A5G8-01 16 1279208 1279208 C G TPSB2 Missense_Mutation p.G160A 0.47 deleterious(0) probably_damaging(0.95) TCGA-77-A5G8-01 16 15829378 15829378 C G MYH11 Missense_Mutation p.E1124D 0.36 benign(0.266) TCGA-77-A5G8-01 16 31373216 31373216 G T ITGAX Missense_Mutation p.A358S 0.29 tolerated(0.47) probably_damaging(0.997) TCGA-77-A5G8-01 16 3900297 3900297 C T CREBBP Splice_Site p.X266_splice 0.12 TCGA-77-A5G8-01 16 49671155 49671155 T C ZNF423 Silent p.Q636Q 0.33 TCGA-77-A5G8-01 16 76389371 76389371 G A CNTNAP4 Nonsense_Mutation p.W93* 0.23 TCGA-77-A5G8-01 16 77229460 77229460 G T MON1B Nonsense_Mutation p.E442* 0.29 TCGA-77-A5G8-01 16 85141493 85141493 C G FAM92B Missense_Mutation p.E129Q 0.21 deleterious(0.01) possibly_damaging(0.639) TCGA-77-A5G8-01 16 89763946 89763946 T C SPATA2L Silent p.A357A 0.29 TCGA-77-A5G8-01 16 9928010 9928010 C G GRIN2A Missense_Mutation p.E577Q 0.36 deleterious(0.01) possibly_damaging(0.903) TCGA-77-A5G8-01 17 35825699 35825699 A T TADA2A Intron 0.29 TCGA-77-A5G8-01 17 38859944 38859944 A T KRT24 Translation_Start_Site p.M1? 0.13 deleterious_low_confidence(0) unknown(0) TCGA-77-A5G8-01 17 39658682 39658689 TGTCTTGA - KRT13 Frame_Shift_Del p.I394Tfs*34 0.15 TCGA-77-A5G8-01 17 61958155 61958155 C T GH2 Missense_Mutation p.E145K 0.32 deleterious(0.02) probably_damaging(0.998) TCGA-77-A5G8-01 17 67287377 67287377 C A ABCA5 Missense_Mutation p.G529V 0.12 deleterious(0) probably_damaging(1) TCGA-77-A5G8-01 17 7339804 7339804 G A TMEM102 Missense_Mutation p.G169E 0.11 tolerated_low_confidence(0.42) benign(0.003) TCGA-77-A5G8-01 17 7577113 7577113 A C TP53 Missense_Mutation p.C275W 0.47 deleterious(0) probably_damaging(0.994) TCGA-77-A5G8-01 17 79916266 79916266 G A NOTUM Silent p.F179F 0.20 TCGA-77-A5G8-01 17 8020121 8020121 A G ALOXE3 Missense_Mutation p.C241R 0.49 tolerated(0.52) benign(0.003) TCGA-77-A5G8-01 18 12028126 12028126 G - IMPA2 Frame_Shift_Del p.L193Cfs*11 0.35 TCGA-77-A5G8-01 18 22806065 22806065 G A ZNF521 Missense_Mutation p.P606L 0.47 deleterious(0.01) possibly_damaging(0.784) TCGA-77-A5G8-01 18 48510844 48510844 G A ELAC1 Missense_Mutation p.R179H 0.12 tolerated(0.56) benign(0.086) TCGA-77-A5G8-01 18 70461479 70461479 G T NETO1 Missense_Mutation p.A171E 0.36 tolerated(0.88) benign(0.001) TCGA-77-A5G8-01 18 71749225 71749225 G C FBXO15 Missense_Mutation p.H400Q 0.53 deleterious(0) probably_damaging(0.972) TCGA-77-A5G8-01 19 10127778 10127778 C A RDH8 Missense_Mutation p.A70E 0.16 tolerated(1) benign(0.003) TCGA-77-A5G8-01 19 10685624 10685624 C G AP1M2 Missense_Mutation p.G377R 0.40 tolerated(0.51) benign(0.003) TCGA-77-A5G8-01 19 12978419 12978419 C A MAST1 Silent p.G757G 0.24 TCGA-77-A5G8-01 19 15512271 15512271 C T AKAP8L Missense_Mutation p.R169H 0.06 tolerated(0.07) benign(0.022) TCGA-77-A5G8-01 19 20807972 20807972 G T ZNF626 Silent p.A237A 0.20 TCGA-77-A5G8-01 19 22942479 22942479 T A ZNF99 Missense_Mutation p.S78C 0.29 tolerated(0.53) benign(0.003) TCGA-77-A5G8-01 19 36018287 36018287 C A SBSN Silent p.G299G 0.15 TCGA-77-A5G8-01 19 36550925 36550925 A T WDR62 Missense_Mutation p.T109S 0.56 tolerated(0.4) probably_damaging(0.978) TCGA-77-A5G8-01 19 43262391 43262391 G T PSG8 Missense_Mutation p.P158T 0.40 deleterious(0) possibly_damaging(0.838) TCGA-77-A5G8-01 19 43373064 43373064 G C PSG1 Missense_Mutation p.Q278E 0.32 tolerated(0.3) benign(0.028) TCGA-77-A5G8-01 19 5824162 5824162 G A NRTN 5'UTR 0.21 TCGA-77-A5G8-01 19 613849 613864 CAGAGATCTGCCTGCT - HCN2 Splice_Site p.X609_splice 0.29 TCGA-77-A5G8-01 19 9004909 9004909 C A MUC16 Silent p.P13303P 0.29 TCGA-77-A5G8-01 1 144879429 144879429 C T PDE4DIP Missense_Mutation p.E1341K 0.07 tolerated(0.18) possibly_damaging(0.602) TCGA-77-A5G8-01 1 145562942 145562942 A C ANKRD35 Missense_Mutation p.E877A 0.27 tolerated(0.09) probably_damaging(0.987) TCGA-77-A5G8-01 1 147400560 147400561 AG C GPR89B 5'UTR 0.53 TCGA-77-A5G8-01 1 158812101 158812101 A G MNDA Missense_Mutation p.E53G 0.11 deleterious(0.01) possibly_damaging(0.767) TCGA-77-A5G8-01 1 167038337 167038337 G T GPA33 Nonsense_Mutation p.Y79* 0.72 TCGA-77-A5G8-01 1 175096173 175096173 G A TNN Silent p.Q999Q 0.13 TCGA-77-A5G8-01 1 196716373 196716373 C A CFH Nonsense_Mutation p.S1209* 0.20 TCGA-77-A5G8-01 1 197099045 197099045 C A ASPM Missense_Mutation p.G877C 0.54 deleterious(0) possibly_damaging(0.555) TCGA-77-A5G8-01 1 197313593 197313593 G A CRB1 Missense_Mutation p.D279N 0.24 deleterious(0.01) probably_damaging(0.994) TCGA-77-A5G8-01 1 197411408 197411408 C T CRB1 Missense_Mutation p.R1331C 0.11 deleterious(0.01) probably_damaging(0.927) TCGA-77-A5G8-01 1 200377348 200377349 AC - ZNF281 Frame_Shift_Del p.L495Ffs*14 0.35 TCGA-77-A5G8-01 1 204588356 204588356 C T LRRN2 Silent p.R255R 0.13 TCGA-77-A5G8-01 1 209907926 209907926 C G HSD11B1 3'UTR 0.16 TCGA-77-A5G8-01 1 214531189 214531189 G T PTPN14 3'UTR 0.19 TCGA-77-A5G8-01 1 228509227 228509227 G T OBSCN Missense_Mutation p.Q5852H 0.41 benign(0.197) TCGA-77-A5G8-01 1 231044717 231044717 C T TTC13 Missense_Mutation p.E787K 0.10 deleterious(0) probably_damaging(0.998) TCGA-77-A5G8-01 1 240370192 240370192 G T FMN2 Nonsense_Mutation p.E694* 0.16 TCGA-77-A5G8-01 1 37282815 37282815 G A GRIK3 Missense_Mutation p.T646M 0.39 deleterious(0) probably_damaging(0.998) TCGA-77-A5G8-01 1 43166659 43166659 C T YBX1 Silent p.P316P 0.33 TCGA-77-A5G8-01 1 43903495 43903495 C G SZT2 Missense_Mutation p.R2087G 0.07 tolerated(0.64) probably_damaging(0.986) TCGA-77-A5G8-01 1 48865096 48865096 C A SPATA6 Missense_Mutation p.R236L 0.43 deleterious(0) probably_damaging(0.986) TCGA-77-A5G8-01 1 63102223 63102223 G A DOCK7 Silent p.V290V 0.40 TCGA-77-A5G8-01 1 75037396 75037396 C T C1orf173 Missense_Mutation p.G1333E 0.38 tolerated(0.09) benign(0.011) TCGA-77-A5G8-01 1 77759519 77759519 C G AK5 Missense_Mutation p.R97G 0.45 tolerated(0.07) probably_damaging(0.977) TCGA-77-A5G8-01 20 1592360 1592360 C T SIRPB1 Intron 0.32 TCGA-77-A5G8-01 20 210231 210231 C A DEFB129 Missense_Mutation p.P124H 0.21 tolerated(0.07) possibly_damaging(0.472) TCGA-77-A5G8-01 20 21492879 21492879 C A NKX2-2 Silent p.T168T 0.33 TCGA-77-A5G8-01 20 44640349 44640349 C T MMP9 Silent p.Y320Y 0.21 TCGA-77-A5G8-01 20 47990546 47990546 C T KCNB1 Silent p.S517S 0.05 TCGA-77-A5G8-01 20 60912950 60912950 C G LAMA5 Missense_Mutation p.A646P 0.35 benign(0.147) TCGA-77-A5G8-01 20 62340050 62340050 C T ZGPAT Nonsense_Mutation p.Q40* 0.32 TCGA-77-A5G8-01 21 38538705 38538705 G C TTC3 Missense_Mutation p.G1397R 0.53 tolerated(0.06) benign(0.016) TCGA-77-A5G8-01 22 29904484 29904484 T A THOC5 Nonsense_Mutation p.K672* 0.27 TCGA-77-A5G8-01 22 30185114 30185114 C A ASCC2 Missense_Mutation p.R721L 0.22 tolerated(0.09) benign(0.024) TCGA-77-A5G8-01 22 35719820 35719820 G T TOM1 Missense_Mutation p.Q187H 0.17 tolerated(0.5) benign(0.015) TCGA-77-A5G8-01 22 35799468 35799468 A T MCM5 Missense_Mutation p.E119V 0.10 deleterious(0.05) possibly_damaging(0.852) TCGA-77-A5G8-01 22 41077457 41077457 T C MCHR1 Missense_Mutation p.I265T 0.38 deleterious(0) possibly_damaging(0.723) TCGA-77-A5G8-01 22 46640876 46640876 T A CDPF1 3'UTR 0.46 TCGA-77-A5G8-01 22 50703359 50703369 GGGCTGCTGGG A MAPK11 3'UTR 0.33 TCGA-77-A5G8-01 2 138400083 138400083 C A THSD7B Silent p.I1278I 0.19 TCGA-77-A5G8-01 2 141110572 141110572 C T LRP1B Missense_Mutation p.C3867Y 0.19 possibly_damaging(0.712) TCGA-77-A5G8-01 2 141459712 141459712 G T LRP1B Missense_Mutation p.D2100E 0.35 benign(0.417) TCGA-77-A5G8-01 2 141739803 141739803 C A LRP1B Missense_Mutation p.R938L 0.07 probably_damaging(0.938) TCGA-77-A5G8-01 2 145157764 145157764 G T ZEB2 Missense_Mutation p.S330R 0.62 deleterious(0) probably_damaging(0.991) TCGA-77-A5G8-01 2 166188056 166188056 G A SCN2A Missense_Mutation p.S789N 0.19 tolerated(1) benign(0.002) TCGA-77-A5G8-01 2 177034185 177034185 C A HOXD3 Missense_Mutation p.Q115K 0.11 tolerated(0.38) benign(0.292) TCGA-77-A5G8-01 2 179596634 179596634 C T TTN Silent p.L5656L 0.13 TCGA-77-A5G8-01 2 196865487 196865487 C T DNAH7 Missense_Mutation p.V432I 0.10 tolerated(0.46) benign(0.001) TCGA-77-A5G8-01 2 21226032 21226032 A T APOB Missense_Mutation p.Y4088N 0.15 benign(0.018) TCGA-77-A5G8-01 2 220046785 220046785 G A FAM134A Missense_Mutation p.D356N 0.16 deleterious(0.03) benign(0.11) TCGA-77-A5G8-01 2 220348216 220348216 C T SPEG Missense_Mutation p.R2011C 0.38 probably_damaging(0.995) TCGA-77-A5G8-01 2 233635977 233635977 A G KCNJ13 Silent p.D32D 0.34 TCGA-77-A5G8-01 2 238249412 238249412 C A COL6A3 Missense_Mutation p.G2716V 0.29 unknown(0) TCGA-77-A5G8-01 2 242082357 242082357 C A PASK Missense_Mutation p.A31S 0.27 tolerated(0.28) benign(0.014) TCGA-77-A5G8-01 2 31489274 31489274 G A EHD3 Missense_Mutation p.E438K 0.36 tolerated(0.11) benign(0.01) TCGA-77-A5G8-01 2 31754456 31754456 C T AL133247.2 Intron 0.10 TCGA-77-A5G8-01 2 77746190 77746190 C G LRRTM4 Missense_Mutation p.E269Q 0.42 deleterious(0.02) probably_damaging(0.915) TCGA-77-A5G8-01 2 86067373 86067373 T C ST3GAL5 Missense_Mutation p.N384S 0.39 tolerated(0.4) benign(0.057) TCGA-77-A5G8-01 2 98351033 98351033 G A ZAP70 Missense_Mutation p.V314M 0.20 deleterious(0.03) probably_damaging(0.959) TCGA-77-A5G8-01 3 108541726 108541726 C A TRAT1 5'UTR 0.32 TCGA-77-A5G8-01 3 10970915 10970915 G A SLC6A11 Missense_Mutation p.A421T 0.43 tolerated(0.06) probably_damaging(1) TCGA-77-A5G8-01 3 110837742 110837742 G T PVRL3 Missense_Mutation p.V248L 0.23 deleterious(0) probably_damaging(0.994) TCGA-77-A5G8-01 3 111432950 111432950 G T PLCXD2 Missense_Mutation p.G281C 0.36 deleterious(0) probably_damaging(1) TCGA-77-A5G8-01 3 111432951 111432951 G T PLCXD2 Missense_Mutation p.G281V 0.36 deleterious(0) probably_damaging(1) TCGA-77-A5G8-01 3 114069804 114069804 C A ZBTB20 Missense_Mutation p.S374I 0.39 deleterious(0.01) probably_damaging(0.944) TCGA-77-A5G8-01 3 118866037 118866037 C T C3orf30 Missense_Mutation p.P334L 0.26 tolerated(0.8) probably_damaging(0.991) TCGA-77-A5G8-01 3 120118750 120118750 G A FSTL1 Nonsense_Mutation p.Q288* 0.30 TCGA-77-A5G8-01 3 123385146 123385146 C T MYLK Missense_Mutation p.A1251T 0.05 deleterious(0) possibly_damaging(0.732) TCGA-77-A5G8-01 3 134079067 134079067 G C AMOTL2 Silent p.A588A 0.08 TCGA-77-A5G8-01 3 146239355 146239355 G A PLSCR1 Silent p.S238S 0.18 TCGA-77-A5G8-01 3 166960334 166960334 C A ZBBX Missense_Mutation p.K784N 0.13 tolerated(0.44) benign(0.013) TCGA-77-A5G8-01 3 179322653 179322653 C G NDUFB5 Missense_Mutation p.A17G 0.27 deleterious(0) benign(0.328) TCGA-77-A5G8-01 3 184094046 184094046 A T THPO Translation_Start_Site p.M1? 0.50 deleterious(0) unknown(0) TCGA-77-A5G8-01 3 184700837 184700837 G T VPS8 Missense_Mutation p.M1180I 0.28 tolerated(0.05) probably_damaging(0.979) TCGA-77-A5G8-01 3 185341845 185341845 G T SENP2 Missense_Mutation p.W529L 0.10 deleterious(0.02) benign(0.088) TCGA-77-A5G8-01 3 19384107 19384107 G A KCNH8 Silent p.G157G 0.29 TCGA-77-A5G8-01 3 196234865 196234865 C G SMCO1 Missense_Mutation p.D180H 0.05 tolerated(0.1) benign(0.006) TCGA-77-A5G8-01 3 403458 403458 C T CHL1 Silent p.C461C 0.15 TCGA-77-A5G8-01 3 69026680 69026680 G A EOGT 3'UTR 0.56 TCGA-77-A5G8-01 3 87017772 87017772 A G VGLL3 Missense_Mutation p.V302A 0.22 tolerated(0.19) benign(0.118) TCGA-77-A5G8-01 3 99513720 99513720 C A COL8A1 Silent p.G325G 0.20 TCGA-77-A5G8-01 3 99568266 99568266 G C FILIP1L Missense_Mutation p.Q752E 0.20 tolerated(0.86) possibly_damaging(0.701) TCGA-77-A5G8-01 4 10445760 10445760 A G ZNF518B Silent p.G731G 0.40 TCGA-77-A5G8-01 4 106510540 106510540 A G ARHGEF38 Missense_Mutation p.N111S 0.36 tolerated(0.2) benign(0.011) TCGA-77-A5G8-01 4 151199154 151199154 G A LRBA Silent p.A2784A 0.06 TCGA-77-A5G8-01 4 15443814 15443814 G T C1QTNF7 Silent p.P94P 0.41 TCGA-77-A5G8-01 4 155298447 155298447 C A DCHS2 Missense_Mutation p.R128S 0.38 tolerated(0.72) benign(0.265) TCGA-77-A5G8-01 4 159529138 159529138 A G RXFP1 Missense_Mutation p.N160S 0.48 deleterious(0) probably_damaging(0.971) TCGA-77-A5G8-01 4 20533632 20533632 G A SLIT2 Missense_Mutation p.V547M 0.57 tolerated(0.15) probably_damaging(0.992) TCGA-77-A5G8-01 4 87703367 87703367 G T PTPN13 Silent p.V1997V 0.41 TCGA-77-A5G8-01 5 118582925 118582925 A G DMXL1 3'UTR 0.25 TCGA-77-A5G8-01 5 1201826 1201826 C A SLC6A19 Missense_Mutation p.L21M 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-77-A5G8-01 5 121188145 121188145 G T FTMT Missense_Mutation p.A163S 0.46 deleterious(0.01) probably_damaging(0.972) TCGA-77-A5G8-01 5 145894915 145894915 G C GPR151 Missense_Mutation p.S254R 0.37 tolerated(0.05) benign(0.086) TCGA-77-A5G8-01 5 14681608 14681608 A G FAM105B Missense_Mutation p.I120M 0.60 tolerated(0.07) probably_damaging(1) TCGA-77-A5G8-01 5 148421001 148421001 G T SH3TC2 Missense_Mutation p.P237T 0.33 deleterious(0) possibly_damaging(0.847) TCGA-77-A5G8-01 5 153432987 153432987 G A MFAP3 Missense_Mutation p.G268D 0.41 tolerated(0.2) probably_damaging(0.999) TCGA-77-A5G8-01 5 164028221 164028221 C T CTC-340A15.2 RNA 0.60 TCGA-77-A5G8-01 5 168139301 168139301 A T SLIT3 Missense_Mutation p.S848T 0.13 deleterious(0) possibly_damaging(0.676) TCGA-77-A5G8-01 5 169694097 169694097 C A LCP2 Intron 0.39 TCGA-77-A5G8-01 5 177151131 177151131 T A FAM153A Missense_Mutation p.I306F 0.25 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-77-A5G8-01 5 1798855 1798855 C A MRPL36 Silent p.G65G 0.08 TCGA-77-A5G8-01 5 24487629 24487629 A T CDH10 3'UTR 0.36 TCGA-77-A5G8-01 5 24505332 24505332 G T CDH10 Missense_Mutation p.L428I 0.11 tolerated(0.2) benign(0.002) TCGA-77-A5G8-01 5 24593513 24593513 C A CDH10 Silent p.T29T 0.54 TCGA-77-A5G8-01 5 5464160 5464160 A T KIAA0947 Silent p.S1571S 0.58 TCGA-77-A5G8-01 5 58270873 58270873 C A PDE4D Missense_Mutation p.W683L 0.53 deleterious_low_confidence(0.03) probably_damaging(0.997) TCGA-77-A5G8-01 5 79797664 79797664 G T FAM151B Missense_Mutation p.A27S 0.43 tolerated(0.74) benign(0.001) TCGA-77-A5G8-01 5 82807981 82807981 T A VCAN Missense_Mutation p.C270S 0.57 deleterious(0) probably_damaging(0.999) TCGA-77-A5G8-01 6 134213017 134213017 C A TCF21 3'UTR 0.36 TCGA-77-A5G8-01 6 137476098 137476098 C A IL22RA2 Missense_Mutation p.R151L 0.45 deleterious(0) probably_damaging(1) TCGA-77-A5G8-01 6 151259871 151259871 C T MTHFD1L Missense_Mutation p.P477L 0.44 deleterious(0.01) probably_damaging(0.923) TCGA-77-A5G8-01 6 166576023 166576023 G T T Silent p.S272S 0.47 TCGA-77-A5G8-01 6 24460625 24460625 G A GPLD1 Missense_Mutation p.S297L 0.48 tolerated(0.07) benign(0.03) TCGA-77-A5G8-01 6 31632119 31632119 G A GPANK1 Missense_Mutation p.A46V 0.40 deleterious(0.01) possibly_damaging(0.521) TCGA-77-A5G8-01 6 43019183 43019183 G A CUL7 Silent p.S336S 0.43 TCGA-77-A5G8-01 6 43112189 43112189 G C PTK7 Missense_Mutation p.G759A 0.36 tolerated(0.13) probably_damaging(0.999) TCGA-77-A5G8-01 6 43418840 43418840 A G DLK2 Missense_Mutation p.S197P 0.44 deleterious(0) probably_damaging(0.997) TCGA-77-A5G8-01 6 69723992 69723992 A G BAI3 Silent p.A664A 0.33 TCGA-77-A5G8-01 6 69758097 69758097 C T BAI3 Missense_Mutation p.P710S 0.40 deleterious(0.02) benign(0.016) TCGA-77-A5G8-01 6 75823424 75823424 C A COL12A1 Silent p.T2578T 0.30 TCGA-77-A5G8-01 7 100180028 100180028 G C LRCH4 Missense_Mutation p.S92C 0.11 deleterious(0) probably_damaging(0.935) TCGA-77-A5G8-01 7 100679496 100679496 C A MUC17 Missense_Mutation p.S1600Y 0.07 unknown(0) TCGA-77-A5G8-01 7 100679497 100679497 C A MUC17 Silent p.S1600S 0.07 TCGA-77-A5G8-01 7 101266281 101266281 C A MYL10 Silent p.A115A 0.61 TCGA-77-A5G8-01 7 103038411 103038411 G C SLC26A5 Nonsense_Mutation p.Y313* 0.08 TCGA-77-A5G8-01 7 123296090 123296090 C T LMOD2 Silent p.L25L 0.16 TCGA-77-A5G8-01 7 133502249 133502249 C T EXOC4 Silent p.A562A 0.21 TCGA-77-A5G8-01 7 134928104 134928104 G C STRA8 Missense_Mutation p.A121P 0.17 tolerated(0.61) benign(0.027) TCGA-77-A5G8-01 7 139653193 139653193 C T TBXAS1 Silent p.C206C 0.14 TCGA-77-A5G8-01 7 148483669 148483669 T G CUL1 Missense_Mutation p.L442R 0.21 deleterious(0) probably_damaging(0.997) TCGA-77-A5G8-01 7 148978632 148978632 A T ZNF783 Missense_Mutation p.E280V 0.12 deleterious(0.03) possibly_damaging(0.554) TCGA-77-A5G8-01 7 149462084 149462084 C T ZNF467 Missense_Mutation p.G503S 0.12 tolerated(0.38) possibly_damaging(0.825) TCGA-77-A5G8-01 7 40027741 40027741 A G CDK13 Silent p.K585K 0.66 TCGA-77-A5G8-01 7 42007316 42007316 G A GLI3 Missense_Mutation p.A770V 0.09 tolerated(0.11) benign(0.22) TCGA-77-A5G8-01 7 4839012 4839012 G C RADIL Silent p.L1075L 0.24 TCGA-77-A5G8-01 7 56128076 56128076 G T CCT6A Missense_Mutation p.G394C 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-77-A5G8-01 7 83029477 83029477 C T SEMA3E Missense_Mutation p.M411I 0.09 deleterious(0) probably_damaging(0.998) TCGA-77-A5G8-01 7 84629037 84629037 C G SEMA3D Missense_Mutation p.E685Q 0.36 tolerated(0.41) possibly_damaging(0.563) TCGA-77-A5G8-01 7 90528615 90528615 T A CDK14 Missense_Mutation p.L199I 0.08 deleterious(0) probably_damaging(0.958) TCGA-77-A5G8-01 7 98529197 98529197 C A TRRAP Missense_Mutation p.S1254Y 0.67 possibly_damaging(0.608) TCGA-77-A5G8-01 7 99016884 99016884 G - PTCD1 3'Flank 0.25 TCGA-77-A5G8-01 8 103663517 103663517 G A KLF10 Missense_Mutation p.P348L 0.23 deleterious(0) probably_damaging(0.987) TCGA-77-A5G8-01 8 110457019 110457019 G C PKHD1L1 Missense_Mutation p.G1641R 0.26 deleterious(0) probably_damaging(0.999) TCGA-77-A5G8-01 8 110598323 110598323 T C SYBU Missense_Mutation p.T166A 0.50 tolerated(1) benign(0.003) TCGA-77-A5G8-01 8 113293549 113293549 G A CSMD3 Missense_Mutation p.A3121V 0.30 tolerated(0.08) possibly_damaging(0.643) TCGA-77-A5G8-01 8 113349797 113349797 C T CSMD3 Nonsense_Mutation p.W2272* 0.24 TCGA-77-A5G8-01 8 139164248 139164248 C A FAM135B Nonsense_Mutation p.G824* 0.28 TCGA-77-A5G8-01 8 139164249 139164249 A G FAM135B Silent p.A823A 0.30 TCGA-77-A5G8-01 8 139209907 139209907 G T FAM135B Missense_Mutation p.S225R 0.19 tolerated(0.06) probably_damaging(0.973) TCGA-77-A5G8-01 8 139706795 139706795 C T COL22A1 Missense_Mutation p.G886S 0.05 probably_damaging(1) TCGA-77-A5G8-01 8 140630834 140630834 G A KCNK9 Silent p.L264L 0.30 TCGA-77-A5G8-01 8 144940554 144940554 C A EPPK1 Missense_Mutation p.G2290C 0.05 probably_damaging(1) TCGA-77-A5G8-01 8 22146130 22146130 G C PIWIL2 Missense_Mutation p.E313Q 0.40 tolerated(0.17) benign(0.109) TCGA-77-A5G8-01 8 51569494 51569494 C A SNTG1 Missense_Mutation p.A292D 0.22 tolerated(0.15) benign(0.028) TCGA-77-A5G8-01 8 51569495 51569495 C G SNTG1 Silent p.A292A 0.23 TCGA-77-A5G8-01 8 59059838 59059838 G A FAM110B Missense_Mutation p.R350K 0.32 deleterious(0) probably_damaging(0.999) TCGA-77-A5G8-01 8 63973891 63973891 C A TTPA Nonsense_Mutation p.E253* 0.26 TCGA-77-A5G8-01 9 115652540 115652540 G A SLC46A2 Missense_Mutation p.A141V 0.05 tolerated(0.47) possibly_damaging(0.833) TCGA-77-A5G8-01 9 131482794 131482794 C T PKN3 Missense_Mutation p.T860I 0.50 deleterious(0) probably_damaging(0.999) TCGA-77-A5G8-01 9 138594167 138594167 C A KCNT1 Silent p.G21G 0.49 TCGA-77-A5G8-01 9 36204144 36204144 C T CLTA Silent p.D151D 0.11 TCGA-77-A5G8-01 9 5044456 5044456 G T JAK2 Missense_Mutation p.G135V 0.47 deleterious(0.01) possibly_damaging(0.728) TCGA-77-A5G8-01 9 79117838 79117838 C T GCNT1 Nonsense_Mutation p.R181* 0.07 TCGA-77-A5G8-01 X 138857002 138857002 C A ATP11C Missense_Mutation p.C691F 0.59 deleterious(0) probably_damaging(0.945) TCGA-77-A5G8-01 X 153581752 153581752 C A FLNA Silent p.T1978T 0.60 TCGA-77-A5G8-01 X 37312895 37312895 T A PRRG1 3'UTR 0.73 TCGA-77-A5G8-01 X 69572448 69572448 A G KIF4A Splice_Site p.X478_splice 0.72 TCGA-77-A5G8-01 X 79952275 79952275 T C BRWD3 Missense_Mutation p.I1011V 0.33 tolerated(0.82) benign(0.008) TCGA-77-A5GA-01 10 101458307 101458307 A G ENTPD7 Missense_Mutation p.T343A 0.14 tolerated(0.17) benign(0.232) TCGA-77-A5GA-01 10 124907843 124907843 G T HMX2 5'UTR 0.05 TCGA-77-A5GA-01 10 15688996 15688996 G A ITGA8 Silent p.S352S 0.10 TCGA-77-A5GA-01 10 17168758 17168758 A C CUBN Splice_Site p.X129_splice 0.26 TCGA-77-A5GA-01 10 23319645 23319645 T G ARMC3 Missense_Mutation p.D722E 0.19 tolerated(1) benign(0.02) TCGA-77-A5GA-01 10 35333590 35333590 A C CUL2 Missense_Mutation p.I225M 0.13 tolerated(0.25) possibly_damaging(0.788) TCGA-77-A5GA-01 10 45799390 45799390 C A OR13A1 Missense_Mutation p.G161W 0.28 tolerated(0.19) benign(0.089) TCGA-77-A5GA-01 10 69926412 69926412 C A MYPN Silent p.A654A 0.17 TCGA-77-A5GA-01 10 70426934 70426934 C T TET1 Missense_Mutation p.R1532W 0.12 tolerated(0.06) benign(0.052) TCGA-77-A5GA-01 10 70695816 70695816 A T DDX50 Nonsense_Mutation p.K526* 0.17 TCGA-77-A5GA-01 10 84745405 84745405 G A NRG3 3'Flank 0.10 TCGA-77-A5GA-01 11 102649472 102649472 C A MMP10 Missense_Mutation p.D169Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-77-A5GA-01 11 102734918 102734918 C A MMP12 RNA 0.18 TCGA-77-A5GA-01 11 122722405 122722405 A T CRTAM Missense_Mutation p.L66F 0.11 tolerated(0.06) benign(0.107) TCGA-77-A5GA-01 11 123777632 123777632 G A OR8D4 Missense_Mutation p.R165K 0.08 tolerated(0.21) benign(0.015) TCGA-77-A5GA-01 11 123777633 123777633 G T OR8D4 Missense_Mutation p.R165S 0.08 tolerated(0.06) benign(0.026) TCGA-77-A5GA-01 11 30253452 30253452 G T FSHB Translation_Start_Site p.M1? 0.25 deleterious(0) probably_damaging(0.995) TCGA-77-A5GA-01 11 48157628 48157628 C T PTPRJ Silent p.V551V 0.06 TCGA-77-A5GA-01 11 50003458 50003458 C A OR4C12 Missense_Mutation p.G194C 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-77-A5GA-01 11 55681432 55681432 A T OR5W2 Missense_Mutation p.S209R 0.17 deleterious(0.04) benign(0.204) TCGA-77-A5GA-01 11 56185225 56185225 T C OR5R1 Missense_Mutation p.I162V 0.16 tolerated(0.52) benign(0.01) TCGA-77-A5GA-01 11 56185226 56185226 A T OR5R1 Silent p.V161V 0.15 TCGA-77-A5GA-01 11 57798937 57798937 A G OR6Q1 Silent p.T171T 0.10 TCGA-77-A5GA-01 11 5799498 5799498 C - OR52N5 Frame_Shift_Del p.V123Cfs*7 0.25 TCGA-77-A5GA-01 11 89896783 89896783 G A NAALAD2 Missense_Mutation p.E426K 0.17 deleterious(0) probably_damaging(0.994) TCGA-77-A5GA-01 12 107080861 107080861 C T RFX4 Silent p.L202L 0.21 TCGA-77-A5GA-01 12 21459853 21459853 A G SLCO1A2 Silent p.N135N 0.14 TCGA-77-A5GA-01 12 55356302 55356302 G C TESPA1 Silent p.T460T 0.21 TCGA-77-A5GA-01 12 67700059 67700059 G T CAND1 Nonsense_Mutation p.E871* 0.14 TCGA-77-A5GA-01 12 97151303 97151303 T C C12orf55 Silent p.A2659A 0.36 TCGA-77-A5GA-01 12 98993854 98993854 G A SLC25A3 Missense_Mutation p.E256K 0.14 deleterious(0.05) benign(0.024) TCGA-77-A5GA-01 13 109475574 109475574 G T MYO16 Nonsense_Mutation p.E327* 0.23 TCGA-77-A5GA-01 13 61034551 61034551 G C TDRD3 Missense_Mutation p.R77P 0.33 deleterious(0) probably_damaging(0.999) TCGA-77-A5GA-01 13 79191136 79191136 C G RNF219 Missense_Mutation p.V254L 0.20 tolerated(1) benign(0.016) TCGA-77-A5GA-01 14 103404685 103404685 G C CDC42BPB Missense_Mutation p.P1631A 0.18 tolerated(0.23) benign(0.027) TCGA-77-A5GA-01 14 106963118 106963118 C A IGHV1-45 Missense_Mutation p.W55L 0.13 deleterious(0) probably_damaging(0.994) TCGA-77-A5GA-01 14 107114001 107114001 C T IGHV3-64 Missense_Mutation p.V32I 0.09 deleterious_low_confidence(0.02) benign(0.109) TCGA-77-A5GA-01 14 20248600 20248600 C A OR4M1 Missense_Mutation p.P40Q 0.12 tolerated(0.06) probably_damaging(1) TCGA-77-A5GA-01 14 79746679 79746679 G A NRXN3 Intron 0.05 TCGA-77-A5GA-01 14 95999775 95999775 C A GLRX5 5'Flank 0.18 TCGA-77-A5GA-01 14 99870575 99870575 G A SETD3 Silent p.F388F 0.08 TCGA-77-A5GA-01 15 23048772 23048772 C T NIPA1 3'UTR 0.09 TCGA-77-A5GA-01 15 23811452 23811452 G T MKRN3 Missense_Mutation p.A175S 0.24 tolerated(0.15) possibly_damaging(0.494) TCGA-77-A5GA-01 15 25417713 25417713 G T SNORD115-3 5'Flank 0.23 TCGA-77-A5GA-01 15 43282241 43282241 C T UBR1 Missense_Mutation p.G1279S 0.23 tolerated(0.37) possibly_damaging(0.543) TCGA-77-A5GA-01 15 59225749 59225749 C T SLTM Missense_Mutation p.G6S 0.24 tolerated(0.15) unknown(0) TCGA-77-A5GA-01 15 65956923 65956923 T G DENND4A Missense_Mutation p.K1832Q 0.09 tolerated(0.23) benign(0.016) TCGA-77-A5GA-01 15 75562274 75562274 C T GOLGA6C Silent p.P634P 0.25 TCGA-77-A5GA-01 15 75684604 75684604 G C SIN3A Missense_Mutation p.Q944E 0.23 tolerated(1) benign(0.444) TCGA-77-A5GA-01 16 30409356 30409356 C A ZNF48 Missense_Mutation p.T262K 0.17 tolerated(0.94) benign(0.168) TCGA-77-A5GA-01 16 30594168 30594168 G T ZNF785 Missense_Mutation p.P311T 0.14 deleterious(0) probably_damaging(0.991) TCGA-77-A5GA-01 16 31201386 31201386 C A FUS Silent p.I364I 0.20 TCGA-77-A5GA-01 16 420204 420204 C A MRPL28 Missense_Mutation p.K5N 0.16 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-77-A5GA-01 16 48239395 48239395 G A ABCC11 Silent p.P578P 0.14 TCGA-77-A5GA-01 16 64981548 64981548 T G CDH11 Silent p.A783A 0.18 TCGA-77-A5GA-01 16 77232007 77232007 G T MON1B Silent p.V482V 0.29 TCGA-77-A5GA-01 17 19642323 19642323 G A ALDH3A1 Missense_Mutation p.P401L 0.32 deleterious(0) probably_damaging(1) TCGA-77-A5GA-01 17 27047591 27047591 A G RPL23A Intron 0.37 TCGA-77-A5GA-01 17 27963512 27963512 T C SSH2 Missense_Mutation p.N552S 0.12 tolerated_low_confidence(0.08) probably_damaging(0.998) TCGA-77-A5GA-01 17 3431343 3431343 C T TRPV3 Nonsense_Mutation p.W493* 0.38 TCGA-77-A5GA-01 17 38146011 38146011 C T PSMD3 Missense_Mutation p.R236W 0.13 deleterious(0) probably_damaging(0.972) TCGA-77-A5GA-01 17 46703523 46703523 G C HOXB9 Missense_Mutation p.R37G 0.23 tolerated(0.11) probably_damaging(0.996) TCGA-77-A5GA-01 17 5013030 5013030 C A ZNF232 Nonsense_Mutation p.G53* 0.11 TCGA-77-A5GA-01 17 56565219 56565219 C T HSF5 Silent p.A139A 0.11 TCGA-77-A5GA-01 17 7578442 7578442 T C TP53 Missense_Mutation p.Y163C 0.43 deleterious(0) probably_damaging(0.999) TCGA-77-A5GA-01 17 80085646 80085646 T A CCDC57 Missense_Mutation p.T830S 0.27 tolerated(1) benign(0.005) TCGA-77-A5GA-01 17 9801217 9801217 G T RCVRN 3'UTR 0.60 TCGA-77-A5GA-01 18 66564499 66564499 G A CCDC102B Missense_Mutation p.R366K 0.13 deleterious(0.02) probably_damaging(0.962) TCGA-77-A5GA-01 18 67266658 67266658 G C DOK6 Silent p.L71L 0.30 TCGA-77-A5GA-01 19 10446530 10446530 G A ICAM3 Missense_Mutation p.R156C 0.50 deleterious(0) probably_damaging(0.986) TCGA-77-A5GA-01 19 10624361 10624361 G T S1PR5 3'UTR 0.15 TCGA-77-A5GA-01 19 17759740 17759740 G T UNC13A Missense_Mutation p.T526K 0.27 deleterious(0) probably_damaging(0.998) TCGA-77-A5GA-01 19 39395946 39395946 G A NFKBIB Silent p.A130A 0.04 TCGA-77-A5GA-01 19 39924347 39924347 G A RPS16 Missense_Mutation p.R69C 0.09 deleterious(0.04) benign(0.023) TCGA-77-A5GA-01 19 43757681 43757681 C T PSG9 3'UTR 0.16 TCGA-77-A5GA-01 19 53086343 53086344 AT - ZNF701 Frame_Shift_Del p.H410Qfs*13 0.13 TCGA-77-A5GA-01 19 53945571 53945571 G T TPM3P9 RNA 0.21 TCGA-77-A5GA-01 19 57666633 57666633 A T DUXA Splice_Site p.X182_splice 0.08 TCGA-77-A5GA-01 19 58578234 58578234 G A ZNF135 Missense_Mutation p.D152N 0.06 tolerated(0.4) benign(0.004) TCGA-77-A5GA-01 19 58578351 58578351 G T ZNF135 Nonsense_Mutation p.E191* 0.07 TCGA-77-A5GA-01 19 58579659 58579659 G A ZNF135 Missense_Mutation p.E627K 0.12 deleterious(0.02) possibly_damaging(0.799) TCGA-77-A5GA-01 1 109276146 109276146 T C FNDC7 Missense_Mutation p.I711T 0.16 tolerated(0.34) possibly_damaging(0.881) TCGA-77-A5GA-01 1 158549470 158549470 G T OR10X1 Missense_Mutation p.P74T 0.10 deleterious(0) probably_damaging(0.999) TCGA-77-A5GA-01 1 161332299 161332299 C T SDHC 3'UTR 0.08 TCGA-77-A5GA-01 1 166818865 166818865 G A POGK Missense_Mutation p.R350H 0.19 tolerated(0.13) probably_damaging(0.964) TCGA-77-A5GA-01 1 175048530 175048530 C T TNN Silent p.C157C 0.14 TCGA-77-A5GA-01 1 183604874 183604874 G A ARPC5 5'UTR 0.21 TCGA-77-A5GA-01 1 196762724 196762724 A T CFHR3 3'UTR 0.36 TCGA-77-A5GA-01 1 201751692 201751692 G T NAV1 Silent p.V684V 0.22 TCGA-77-A5GA-01 1 202920134 202920134 G A ADIPOR1 Missense_Mutation p.A22V 0.23 tolerated(0.32) benign(0) TCGA-77-A5GA-01 1 20517580 20517580 G A UBXN10 Missense_Mutation p.V176I 0.07 tolerated(0.2) benign(0) TCGA-77-A5GA-01 1 22151123 22151123 C T LDLRAD2 3'UTR 0.19 TCGA-77-A5GA-01 1 233394807 233394807 T C PCNXL2 Silent p.L267L 0.15 TCGA-77-A5GA-01 1 247201415 247201415 T C ZNF670 Missense_Mutation p.Y169C 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-77-A5GA-01 1 248366890 248366890 T C OR2M3 Missense_Mutation p.I174T 0.20 deleterious(0) probably_damaging(0.981) TCGA-77-A5GA-01 1 35870690 35870690 T G ZMYM4 Missense_Mutation p.S1199A 0.11 tolerated(0.2) probably_damaging(0.952) TCGA-77-A5GA-01 1 55352602 55352602 G A DHCR24 Missense_Mutation p.P64L 0.12 deleterious(0) probably_damaging(0.979) TCGA-77-A5GA-01 1 76259893 76259893 G T RABGGTB Missense_Mutation p.G277V 0.10 deleterious(0) probably_damaging(0.996) TCGA-77-A5GA-01 1 7863838 7863838 A G PER3 Missense_Mutation p.S355G 0.23 deleterious(0) possibly_damaging(0.787) TCGA-77-A5GA-01 1 86921002 86921002 A T CLCA2 Missense_Mutation p.Q875L 0.12 tolerated(0.17) benign(0.008) TCGA-77-A5GA-01 1 89325618 89325618 G A GTF2B Missense_Mutation p.S161F 0.24 deleterious(0) probably_damaging(0.973) TCGA-77-A5GA-01 1 94577041 94577041 G T ABCA4 Silent p.P85P 0.20 TCGA-77-A5GA-01 20 21327129 21327129 C T XRN2 Missense_Mutation p.R536W 0.05 deleterious(0.05) possibly_damaging(0.586) TCGA-77-A5GA-01 20 30584408 30584408 C A XKR7 Nonsense_Mutation p.Y296* 0.19 TCGA-77-A5GA-01 20 47246024 47246024 C G PREX1 Missense_Mutation p.A1577P 0.18 deleterious(0.02) benign(0.102) TCGA-77-A5GA-01 20 49620776 49620776 C T KCNG1 Missense_Mutation p.G448S 0.17 deleterious(0.02) possibly_damaging(0.723) TCGA-77-A5GA-01 20 61511912 61511912 C G DIDO1 Missense_Mutation p.R1799T 0.19 possibly_damaging(0.848) TCGA-77-A5GA-01 21 17196476 17196476 A G USP25 Missense_Mutation p.Y400C 0.19 deleterious(0) probably_damaging(0.926) TCGA-77-A5GA-01 21 31023559 31023559 G T GRIK1 Missense_Mutation p.T278N 0.14 deleterious(0) probably_damaging(0.998) TCGA-77-A5GA-01 21 39671913 39671913 G A KCNJ15 Missense_Mutation p.E244K 0.11 deleterious(0) possibly_damaging(0.829) TCGA-77-A5GA-01 22 40066237 40066237 T C CACNA1I Splice_Site p.X1463_splice 0.22 TCGA-77-A5GA-01 22 45798353 45798353 C A SMC1B Silent p.L238L 0.26 TCGA-77-A5GA-01 2 125261968 125261968 G T CNTNAP5 Missense_Mutation p.D387Y 0.11 deleterious(0) possibly_damaging(0.84) TCGA-77-A5GA-01 2 125504861 125504861 G T CNTNAP5 Missense_Mutation p.W710C 0.20 deleterious(0) probably_damaging(0.999) TCGA-77-A5GA-01 2 131096752 131096752 G A CCDC115 Nonsense_Mutation p.R162* 0.17 TCGA-77-A5GA-01 2 141359072 141359072 G T LRP1B Silent p.I2312I 0.21 TCGA-77-A5GA-01 2 152422039 152422039 C G NEB Missense_Mutation p.K6114N 0.26 probably_damaging(1) TCGA-77-A5GA-01 2 163031378 163031378 G A FAP Silent p.Y656Y 0.16 TCGA-77-A5GA-01 2 171917649 171917649 T A TLK1 Missense_Mutation p.Q116H 0.18 tolerated(0.36) benign(0.003) TCGA-77-A5GA-01 2 179412967 179412967 G T TTN Missense_Mutation p.S31129Y 0.19 TCGA-77-A5GA-01 2 179443984 179443984 T C TTN Silent p.L22591L 0.22 TCGA-77-A5GA-01 2 192255061 192255061 G A MYO1B Missense_Mutation p.E609K 0.06 tolerated(0.5) benign(0.362) TCGA-77-A5GA-01 2 197171244 197171244 G A HECW2 Missense_Mutation p.P928S 0.15 tolerated(0.12) benign(0.226) TCGA-77-A5GA-01 2 204150383 204150383 A T CYP20A1 Missense_Mutation p.K300I 0.21 deleterious(0.03) benign(0.279) TCGA-77-A5GA-01 2 204335036 204335036 G A RAPH1 Intron 0.15 TCGA-77-A5GA-01 2 225342945 225342948 TTCT - CUL3 Frame_Shift_Del p.K715Rfs*7 0.10 TCGA-77-A5GA-01 2 31178778 31178778 C A GALNT14 Missense_Mutation p.G183C 0.16 deleterious(0) probably_damaging(1) TCGA-77-A5GA-01 2 44102443 44102443 C T ABCG8 Silent p.A549A 0.25 TCGA-77-A5GA-01 2 68384659 68384659 C A WDR92 5'UTR 0.08 TCGA-77-A5GA-01 2 77746415 77746415 G A LRRTM4 Nonsense_Mutation p.R194* 0.17 TCGA-77-A5GA-01 2 89197166 89197166 G C IGKV5-2 Missense_Mutation p.A71P 0.22 deleterious(0) probably_damaging(0.95) TCGA-77-A5GA-01 2 90139485 90139485 G T IGKV1D-16 Missense_Mutation p.G86C 0.16 deleterious(0) probably_damaging(0.997) TCGA-77-A5GA-01 3 102181129 102181129 C T ZPLD1 Missense_Mutation p.S212L 0.22 tolerated(0.32) benign(0.015) TCGA-77-A5GA-01 3 12422963 12422963 T C PPARG Silent p.Y151Y 0.24 TCGA-77-A5GA-01 3 127831799 127831799 C T RUVBL1 Missense_Mutation p.G98E 0.29 deleterious(0) probably_damaging(0.993) TCGA-77-A5GA-01 3 142561872 142561872 C T PCOLCE2 Missense_Mutation p.G156E 0.09 deleterious(0) probably_damaging(1) TCGA-77-A5GA-01 3 147131197 147131197 C T ZIC1 Silent p.Y401Y 0.08 TCGA-77-A5GA-01 3 148714541 148714541 A G GYG1 Missense_Mutation p.I111V 0.06 tolerated(0.55) benign(0.213) TCGA-77-A5GA-01 3 190999880 190999880 G T UTS2B Silent p.T33T 0.14 TCGA-77-A5GA-01 3 27490237 27490237 C T SLC4A7 Missense_Mutation p.R56H 0.26 tolerated(0.62) benign(0.008) TCGA-77-A5GA-01 3 52489751 52489751 G A NISCH Splice_Site p.X31_splice 0.26 TCGA-77-A5GA-01 3 98110045 98110045 G T OR5K3 Missense_Mutation p.C179F 0.24 deleterious(0) probably_damaging(1) TCGA-77-A5GA-01 4 123301299 123301299 A T ADAD1 Silent p.P25P 0.23 TCGA-77-A5GA-01 4 178231020 178231020 G T NEIL3 5'UTR 0.25 TCGA-77-A5GA-01 4 183601804 183601804 T C TENM3 Missense_Mutation p.I583T 0.23 tolerated(0.09) benign(0.006) TCGA-77-A5GA-01 4 185941876 185941876 C - HELT Frame_Shift_Del p.H312Tfs*? 0.14 TCGA-77-A5GA-01 4 20525799 20525799 A - SLIT2 Frame_Shift_Del p.A480Lfs*17 0.23 TCGA-77-A5GA-01 4 79747218 79747218 G T BMP2K Missense_Mutation p.R69L 0.31 deleterious(0) probably_damaging(0.973) TCGA-77-A5GA-01 5 121780323 121780323 C T SNCAIP Silent p.S496S 0.06 TCGA-77-A5GA-01 5 128324307 128324307 G T SLC27A6 Missense_Mutation p.A234S 0.18 deleterious(0) probably_damaging(1) TCGA-77-A5GA-01 5 140230017 140230017 G T PCDHA9 Missense_Mutation p.R646L 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.564) TCGA-77-A5GA-01 5 140769121 140769121 C - PCDHGB4 Frame_Shift_Del p.A557Gfs*30 0.18 TCGA-77-A5GA-01 5 154244884 154244884 G T CNOT8 Nonsense_Mutation p.E84* 0.18 TCGA-77-A5GA-01 5 33684162 33684162 T A ADAMTS12 Splice_Site p.X212_splice 0.18 TCGA-77-A5GA-01 5 35774063 35774063 A G SPEF2 Missense_Mutation p.R1340G 0.18 deleterious(0.01) benign(0.019) TCGA-77-A5GA-01 5 35904630 35904630 G T CAPSL 3'UTR 0.16 TCGA-77-A5GA-01 5 40947753 40947753 T C C7 Missense_Mutation p.I263T 0.06 tolerated(0.08) benign(0.082) TCGA-77-A5GA-01 5 45262464 45262464 C T HCN1 Silent p.P744P 0.09 TCGA-77-A5GA-01 5 81283426 81283426 C T ATG10 Nonsense_Mutation p.Q13* 0.24 TCGA-77-A5GA-01 5 82940233 82940233 C A HAPLN1 Missense_Mutation p.D242Y 0.19 deleterious(0) probably_damaging(0.95) TCGA-77-A5GA-01 5 95018237 95018237 T G SPATA9 Missense_Mutation p.N49H 0.18 deleterious(0.02) benign(0.444) TCGA-77-A5GA-01 6 130475999 130475999 G T SAMD3 Missense_Mutation p.L332M 0.24 tolerated(0.66) benign(0.003) TCGA-77-A5GA-01 6 132910748 132910748 C A TAAR5 Missense_Mutation p.R26S 0.18 deleterious(0) possibly_damaging(0.744) TCGA-77-A5GA-01 6 26205000 26205000 G C HIST1H4E Missense_Mutation p.G43A 0.09 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-77-A5GA-01 6 40360542 40360542 C T LRFN2 Missense_Mutation p.A504T 0.30 tolerated(0.06) possibly_damaging(0.742) TCGA-77-A5GA-01 6 40399913 40399913 C T LRFN2 Missense_Mutation p.G314R 0.12 deleterious(0) probably_damaging(1) TCGA-77-A5GA-01 6 57017032 57017032 T C ZNF451 Silent p.N922N 0.13 TCGA-77-A5GA-01 6 66204674 66204674 G T EYS Nonsense_Mutation p.Y210* 0.07 TCGA-77-A5GA-01 6 83602736 83602736 A G UBE3D 3'UTR 0.23 TCGA-77-A5GA-01 7 100086145 100086145 G A NYAP1 Silent p.P267P 0.04 TCGA-77-A5GA-01 7 112407707 112407707 C A TMEM168 Nonsense_Mutation p.E547* 0.28 TCGA-77-A5GA-01 7 142111548 142111548 T G TRBV5-7 Missense_Mutation p.Q63P 0.19 deleterious(0) probably_damaging(0.924) TCGA-77-A5GA-01 7 148484186 148484186 G A CUL1 Missense_Mutation p.E485K 0.19 deleterious(0) probably_damaging(0.991) TCGA-77-A5GA-01 7 154875973 154875973 G A HTR5A Missense_Mutation p.A284T 0.20 deleterious(0.01) possibly_damaging(0.7) TCGA-77-A5GA-01 7 73245363 73245363 C G CLDN4 5'UTR 0.14 TCGA-77-A5GA-01 7 76828713 76828713 A C FGL2 Nonsense_Mutation p.L133* 0.15 TCGA-77-A5GA-01 7 92861748 92861748 T C CCDC132 5'UTR 0.24 TCGA-77-A5GA-01 8 110447472 110447472 G T PKHD1L1 Missense_Mutation p.A1132S 0.19 tolerated(0.81) benign(0.011) TCGA-77-A5GA-01 8 113988068 113988068 C T CSMD3 Missense_Mutation p.R447K 0.19 tolerated(0.09) benign(0.011) TCGA-77-A5GA-01 8 131149196 131149196 C G ASAP1 Splice_Site p.X390_splice 0.21 TCGA-77-A5GA-01 8 144945262 144945262 C A EPPK1 Silent p.L720L 0.21 TCGA-77-A5GA-01 8 17941606 17941606 A C ASAH1 Intron 0.38 TCGA-77-A5GA-01 8 72948637 72948637 G A TRPA1 Missense_Mutation p.T814M 0.12 tolerated(0.07) possibly_damaging(0.463) TCGA-77-A5GA-01 8 77765466 77765466 C T ZFHX4 Silent p.D2103D 0.25 TCGA-77-A5GA-01 9 107594978 107594978 G T ABCA1 Missense_Mutation p.D462E 0.30 tolerated(1) benign(0.15) TCGA-77-A5GA-01 9 131345004 131345004 G C SPTAN1 Missense_Mutation p.R561T 0.27 tolerated(0.05) benign(0.155) TCGA-77-A5GA-01 9 131346066 131346066 G T SPTAN1 Splice_Site p.X671_splice 0.28 TCGA-77-A5GA-01 9 131346067 131346067 G A SPTAN1 Missense_Mutation p.G671E 0.29 deleterious(0.01) possibly_damaging(0.885) TCGA-77-A5GA-01 9 131346197 131346197 G C SPTAN1 Missense_Mutation p.Q714H 0.29 deleterious(0) probably_damaging(0.919) TCGA-77-A5GA-01 9 140157579 140157579 C T NELFB Missense_Mutation p.R230W 0.25 deleterious(0) probably_damaging(0.996) TCGA-77-A5GA-01 9 140941853 140941853 T A CACNA1B Silent p.A1182A 0.32 TCGA-77-A5GA-01 9 79325235 79325235 C T PRUNE2 Missense_Mutation p.R652Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-77-A5GA-01 X 110435380 110435380 C G PAK3 Missense_Mutation p.L322V 0.37 tolerated(0.28) benign(0.002) TCGA-77-A5GA-01 X 128724192 128724192 G T OCRL Missense_Mutation p.R884L 0.63 deleterious(0) probably_damaging(0.946) TCGA-77-A5GA-01 X 134947463 134947463 A T CT45A5 Missense_Mutation p.F162I 0.53 tolerated(0.37) benign(0.037) TCGA-77-A5GA-01 X 1585441 1585441 G T P2RY8 Missense_Mutation p.P4Q 0.07 tolerated(0.61) benign(0.017) TCGA-77-A5GA-01 X 18938228 18938228 C T PHKA2 Missense_Mutation p.D629N 0.33 tolerated(0.39) benign(0.007) TCGA-77-A5GA-01 X 21990054 21990054 G T SMS Missense_Mutation p.L70F 0.21 deleterious(0.03) possibly_damaging(0.548) TCGA-77-A5GA-01 X 63410924 63410924 T A AMER1 Missense_Mutation p.Y748F 0.55 tolerated(0.15) benign(0.014) TCGA-77-A5GA-01 X 76937346 76937346 C T ATRX Silent p.L1134L 0.48 TCGA-77-A5GB-01 10 116251599 116251599 G A ABLIM1 Silent p.C311C 0.17 TCGA-77-A5GB-01 10 118225636 118225636 G T PNLIPRP3 Missense_Mutation p.A295S 0.21 deleterious(0.02) benign(0.072) TCGA-77-A5GB-01 10 32873229 32873229 C G C10ORF68 Missense_Mutation p.Q14E 0.11 tolerated_low_confidence(0.31) benign(0.188) TCGA-77-A5GB-01 10 6539060 6539060 C G PRKCQ Missense_Mutation p.K199N 0.16 deleterious(0) probably_damaging(0.957) TCGA-77-A5GB-01 10 69954193 69954193 G T MYPN Missense_Mutation p.G1000V 0.12 deleterious(0) probably_damaging(1) TCGA-77-A5GB-01 10 71913665 71913665 C G SAR1A Missense_Mutation p.D137H 0.21 deleterious(0) probably_damaging(0.985) TCGA-77-A5GB-01 10 86008699 86008699 C T RGR Silent p.D90D 0.04 TCGA-77-A5GB-01 10 89692895 89692895 G T PTEN Nonsense_Mutation p.G127* 0.15 TCGA-77-A5GB-01 11 118360919 118360919 C G KMT2A Missense_Mutation p.H1551D 0.14 possibly_damaging(0.585) TCGA-77-A5GB-01 11 118889511 118889511 G A TRAPPC4 Silent p.A2A 0.09 TCGA-77-A5GB-01 11 120979930 120979930 A C TECTA Missense_Mutation p.N70T 0.17 deleterious(0) probably_damaging(0.997) TCGA-77-A5GB-01 11 129321353 129321353 C T BARX2 3'UTR 0.16 TCGA-77-A5GB-01 11 16036545 16036545 C T SOX6 Missense_Mutation p.E559K 0.28 deleterious(0.03) benign(0.073) TCGA-77-A5GB-01 11 49598014 49598014 C G RP11-707M1.1 RNA 0.16 TCGA-77-A5GB-01 11 55905166 55905166 G T OR8J3 Missense_Mutation p.T10N 0.13 tolerated(0.26) benign(0.082) TCGA-77-A5GB-01 11 58343325 58343325 G C LPXN Intron 0.10 TCGA-77-A5GB-01 11 65088983 65088983 G A CDC42EP2 Missense_Mutation p.S205N 0.13 tolerated_low_confidence(0.21) benign(0.004) TCGA-77-A5GB-01 11 75442333 75442333 C T MOGAT2 3'UTR 0.11 TCGA-77-A5GB-01 11 77937755 77937755 G A GAB2 Silent p.L321L 0.12 TCGA-77-A5GB-01 12 112891132 112891132 G A PTPN11 Missense_Mutation p.D156N 0.16 tolerated(0.12) probably_damaging(0.992) TCGA-77-A5GB-01 12 57850065 57850065 A G INHBE Missense_Mutation p.I163V 0.16 tolerated(1) benign(0.001) TCGA-77-A5GB-01 12 6342650 6342650 G T CD9 Nonsense_Mutation p.E116* 0.17 TCGA-77-A5GB-01 12 70732532 70732532 G A CNOT2 Missense_Mutation p.D370N 0.11 tolerated(0.1) possibly_damaging(0.701) TCGA-77-A5GB-01 13 109562458 109562458 G C MYO16 Missense_Mutation p.E607Q 0.16 deleterious(0.05) possibly_damaging(0.864) TCGA-77-A5GB-01 13 20242658 20242658 G A MPHOSPH8 Silent p.Q772Q 0.31 TCGA-77-A5GB-01 13 28626798 28626798 G T FLT3 Nonsense_Mutation p.Y166* 0.22 TCGA-77-A5GB-01 13 39618300 39618300 A G NHLRC3 Silent p.T220T 0.08 TCGA-77-A5GB-01 13 48881489 48881490 AG - RB1 Frame_Shift_Del p.R73Sfs*36 0.21 TCGA-77-A5GB-01 14 105406359 105406359 C T AHNAK2 Silent p.V5143V 0.16 TCGA-77-A5GB-01 14 20502144 20502144 G A OR4K13 Silent p.Y258Y 0.11 TCGA-77-A5GB-01 14 22386410 22386410 G C TRAV13-2 5'UTR 0.06 TCGA-77-A5GB-01 14 39536473 39536473 G C SEC23A Missense_Mutation p.F377L 0.08 deleterious(0.01) probably_damaging(0.978) TCGA-77-A5GB-01 14 75574150 75574150 T C NEK9 Missense_Mutation p.H408R 0.14 deleterious(0.02) possibly_damaging(0.796) TCGA-77-A5GB-01 15 44149179 44149179 C T WDR76 Silent p.F409F 0.11 TCGA-77-A5GB-01 15 64046715 64046715 C G HERC1 Missense_Mutation p.G588A 0.07 possibly_damaging(0.809) TCGA-77-A5GB-01 15 79614572 79614572 C G TMED3 3'UTR 0.08 TCGA-77-A5GB-01 15 89876852 89876852 T C POLG Missense_Mutation p.Q45R 0.26 tolerated(0.58) benign(0) TCGA-77-A5GB-01 16 30732144 30732144 C T SRCAP Missense_Mutation p.S1033L 0.16 unknown(0) TCGA-77-A5GB-01 16 3486732 3486732 C T ZNF597 Missense_Mutation p.E323K 0.10 tolerated(0.74) benign(0.014) TCGA-77-A5GB-01 16 46836881 46836881 G C C16orf87 Missense_Mutation p.Q150E 0.09 deleterious(0) benign(0.042) TCGA-77-A5GB-01 16 53331006 53331006 G C CHD9 Missense_Mutation p.L1883F 0.08 probably_damaging(1) TCGA-77-A5GB-01 16 56536685 56536685 G A BBS2 Silent p.I280I 0.14 TCGA-77-A5GB-01 16 67942961 67942961 A G PSKH1 Silent p.L103L 0.12 TCGA-77-A5GB-01 16 68104891 68104891 T G DUS2 Missense_Mutation p.F230L 0.15 deleterious(0) possibly_damaging(0.838) TCGA-77-A5GB-01 17 10428867 10428867 C G MYH2 Missense_Mutation p.A1480P 0.13 deleterious(0.01) benign(0.045) TCGA-77-A5GB-01 17 27382858 27382858 G T PIPOX Missense_Mutation p.D332Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-77-A5GB-01 17 39134365 39134365 C T KRT40 3'UTR 0.19 TCGA-77-A5GB-01 17 46128452 46128452 A G NFE2L1 5'UTR 0.14 TCGA-77-A5GB-01 17 54921430 54921430 T A DGKE Nonsense_Mutation p.L172* 0.19 TCGA-77-A5GB-01 17 58524952 58524952 G A APPBP2 Missense_Mutation p.P583L 0.17 deleterious_low_confidence(0.02) benign(0.007) TCGA-77-A5GB-01 17 7573982 7573982 C A TP53 Nonsense_Mutation p.E349* 0.16 TCGA-77-A5GB-01 18 28725642 28725642 G C DSC1 Missense_Mutation p.P291A 0.12 deleterious(0.02) possibly_damaging(0.906) TCGA-77-A5GB-01 18 28980852 28980852 T C DSG4 Missense_Mutation p.I429T 0.12 tolerated(0.16) benign(0.026) TCGA-77-A5GB-01 18 44561057 44561057 G T TCEB3B Silent p.P193P 0.12 TCGA-77-A5GB-01 18 55998015 55998015 C G NEDD4L Missense_Mutation p.L287V 0.18 tolerated(0.3) benign(0.196) TCGA-77-A5GB-01 18 690589 690589 G C ENOSF1 Missense_Mutation p.S214W 0.12 deleterious(0) probably_damaging(0.999) TCGA-77-A5GB-01 19 13264172 13264172 G A IER2 Missense_Mutation p.E58K 0.19 tolerated(0.39) benign(0.137) TCGA-77-A5GB-01 19 14829812 14829812 G C ZNF333 Missense_Mutation p.G558A 0.09 deleterious(0) possibly_damaging(0.857) TCGA-77-A5GB-01 19 15375227 15375227 C G BRD4 Missense_Mutation p.M400I 0.08 benign(0) TCGA-77-A5GB-01 19 3918807 3918807 G A ATCAY Silent p.A335A 0.10 TCGA-77-A5GB-01 19 39359892 39359892 C A RINL Missense_Mutation p.A545S 0.11 tolerated(0.68) benign(0.062) TCGA-77-A5GB-01 19 49622090 49622090 G A C19orf73 Missense_Mutation p.R64W 0.11 tolerated_low_confidence(0.16) benign(0) TCGA-77-A5GB-01 19 53770173 53770173 G A VN1R4 Missense_Mutation p.S249F 0.10 deleterious(0) probably_damaging(0.92) TCGA-77-A5GB-01 19 56313027 56313027 C G NLRP11 Silent p.L694L 0.17 TCGA-77-A5GB-01 19 58187467 58187467 G A ZSCAN4 5'UTR 0.14 TCGA-77-A5GB-01 19 58187837 58187837 G T ZSCAN4 Missense_Mutation p.W108C 0.10 deleterious(0) probably_damaging(1) TCGA-77-A5GB-01 19 992013 992013 C T WDR18 Silent p.F330F 0.18 TCGA-77-A5GB-01 1 103474032 103474032 T C COL11A1 Missense_Mutation p.D557G 0.14 unknown(0) TCGA-77-A5GB-01 1 112042905 112042905 G A ADORA3 Intron 0.10 TCGA-77-A5GB-01 1 145492357 145492357 G A LIX1L Silent p.E193E 0.07 TCGA-77-A5GB-01 1 147120214 147120214 C A ACP6 Splice_Site p.X326_splice 0.13 TCGA-77-A5GB-01 1 147380308 147380308 C T GJA8 Missense_Mutation p.R76C 0.04 deleterious(0) probably_damaging(1) TCGA-77-A5GB-01 1 153012723 153012723 C T SPRR2D Missense_Mutation p.E34K 0.14 tolerated_low_confidence(0.06) unknown(0) TCGA-77-A5GB-01 1 155018375 155018375 C T DCST1 Silent p.F393F 0.13 TCGA-77-A5GB-01 1 156100417 156100417 G A LMNA Silent p.K122K 0.17 TCGA-77-A5GB-01 1 156100511 156100511 G A LMNA Missense_Mutation p.E154K 0.26 deleterious(0) probably_damaging(0.942) TCGA-77-A5GB-01 1 157512788 157512788 C T FCRL5 Silent p.L328L 0.08 TCGA-77-A5GB-01 1 159825835 159825835 A G VSIG8 Missense_Mutation p.L270P 0.19 deleterious(0) probably_damaging(0.999) TCGA-77-A5GB-01 1 160062436 160062436 G A IGSF8 Silent p.R454R 0.07 TCGA-77-A5GB-01 1 179820116 179820116 G C TOR1AIP2 Silent p.L139L 0.16 TCGA-77-A5GB-01 1 183885666 183885666 C G RGL1 Missense_Mutation p.S647C 0.14 deleterious(0.03) possibly_damaging(0.503) TCGA-77-A5GB-01 1 220978599 220978599 G A MARC1 Silent p.P290P 0.04 TCGA-77-A5GB-01 1 236646418 236646418 C G EDARADD 3'Flank 0.17 TCGA-77-A5GB-01 1 237753215 237753215 G T RYR2 Missense_Mutation p.V1241F 0.16 benign(0.183) TCGA-77-A5GB-01 1 27684760 27684760 G C MAP3K6 Missense_Mutation p.Q943E 0.09 tolerated(0.86) benign(0.075) TCGA-77-A5GB-01 1 45525827 45525827 G C ZSWIM5 Missense_Mutation p.L349V 0.10 tolerated(0.08) unknown(0) TCGA-77-A5GB-01 1 55472891 55472891 A G BSND Missense_Mutation p.H165R 0.09 deleterious(0) possibly_damaging(0.868) TCGA-77-A5GB-01 1 57383438 57383438 C A C8A 3'UTR 0.13 TCGA-77-A5GB-01 1 63999887 63999887 G C EFCAB7 Missense_Mutation p.K268N 0.13 deleterious(0) possibly_damaging(0.846) TCGA-77-A5GB-01 1 7845573 7845573 C T PER3 Silent p.P67P 0.09 TCGA-77-A5GB-01 1 91404618 91404618 C T ZNF644 Missense_Mutation p.E765K 0.12 tolerated(0.08) benign(0.046) TCGA-77-A5GB-01 20 42331208 42331208 C G MYBL2 Missense_Mutation p.L344V 0.13 tolerated(1) benign(0.024) TCGA-77-A5GB-01 20 42331263 42331263 C T MYBL2 Missense_Mutation p.S362F 0.13 deleterious(0.02) benign(0.001) TCGA-77-A5GB-01 20 47858633 47858633 C T DDX27 Missense_Mutation p.S700F 0.16 deleterious(0.01) possibly_damaging(0.736) TCGA-77-A5GB-01 20 52188392 52188392 C T ZNF217 Missense_Mutation p.G1013E 0.10 deleterious(0) probably_damaging(0.995) TCGA-77-A5GB-01 20 55108368 55108368 G T FAM209B 5'UTR 0.14 TCGA-77-A5GB-01 20 62421402 62421402 G C ZBTB46 Missense_Mutation p.Q237E 0.11 tolerated(0.36) benign(0.011) TCGA-77-A5GB-01 21 17443590 17443590 C T LINC00478 RNA 0.14 TCGA-77-A5GB-01 21 19725362 19725362 C G TMPRSS15 Missense_Mutation p.E343D 0.11 tolerated(0.11) benign(0.053) TCGA-77-A5GB-01 21 34926503 34926503 G A SON Missense_Mutation p.E1656K 0.08 benign(0.292) TCGA-77-A5GB-01 22 23063621 23063621 G A IGLV3-19 Missense_Mutation p.D110N 0.17 deleterious(0) probably_damaging(0.972) TCGA-77-A5GB-01 22 26168351 26168351 T C MYO18B Silent p.S581S 0.12 TCGA-77-A5GB-01 22 50546600 50546600 G C MOV10L1 Missense_Mutation p.E160Q 0.06 tolerated(0.25) benign(0.015) TCGA-77-A5GB-01 2 149247627 149247627 G A MBD5 Missense_Mutation p.E1243K 0.09 tolerated_low_confidence(0.14) unknown(0) TCGA-77-A5GB-01 2 160112826 160112826 G C WDSUB1 Nonsense_Mutation p.S338* 0.13 TCGA-77-A5GB-01 2 231177426 231177426 C T SP140 3'UTR 0.09 TCGA-77-A5GB-01 2 61148979 61148979 C G REL Nonsense_Mutation p.S390* 0.17 TCGA-77-A5GB-01 2 75117980 75117980 C G HK2 Missense_Mutation p.S889C 0.14 deleterious(0) benign(0.002) TCGA-77-A5GB-01 3 10427004 10427004 G A ATP2B2 Silent p.D316D 0.12 TCGA-77-A5GB-01 3 112198483 112198483 G C BTLA Silent p.L74L 0.11 TCGA-77-A5GB-01 3 119300971 119300971 C T ADPRH Intron 0.09 TCGA-77-A5GB-01 3 126154457 126154457 C T CCDC37 Missense_Mutation p.R562W 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-77-A5GB-01 3 129155386 129155386 C T MBD4 Silent p.R367R 0.17 TCGA-77-A5GB-01 3 130743221 130743221 G T ASTE1 Missense_Mutation p.F310L 0.13 deleterious(0.03) probably_damaging(0.999) TCGA-77-A5GB-01 3 130743373 130743373 G C ASTE1 Missense_Mutation p.L260V 0.14 deleterious(0) probably_damaging(0.999) TCGA-77-A5GB-01 3 138665259 138665259 G T FOXL2 Silent p.I102I 0.08 TCGA-77-A5GB-01 3 149087752 149087752 A T TM4SF1 Intron 0.25 TCGA-77-A5GB-01 3 15677035 15677035 C T BTD Missense_Mutation p.A50V 0.12 tolerated(0.11) benign(0.01) TCGA-77-A5GB-01 3 165547430 165547430 C A BCHE Silent p.V464V 0.09 TCGA-77-A5GB-01 3 183883272 183883272 C T DVL3 Silent p.L252L 0.14 TCGA-77-A5GB-01 3 195300797 195300797 C G APOD Missense_Mutation p.E57Q 0.09 deleterious(0.03) probably_damaging(0.997) TCGA-77-A5GB-01 4 106155374 106155374 G A TET2 Missense_Mutation p.G92E 0.13 deleterious(0) probably_damaging(1) TCGA-77-A5GB-01 4 57182412 57182412 C T KIAA1211 Missense_Mutation p.S915F 0.16 tolerated(0.06) possibly_damaging(0.683) TCGA-77-A5GB-01 4 651266 651266 G C PDE6B Missense_Mutation p.E462Q 0.10 deleterious(0.03) probably_damaging(0.989) TCGA-77-A5GB-01 4 85569740 85569740 G C CDS1 Missense_Mutation p.Q429H 0.12 deleterious(0.01) probably_damaging(0.976) TCGA-77-A5GB-01 5 100152190 100152190 T C ST8SIA4 Intron 0.09 TCGA-77-A5GB-01 5 112170762 112170762 C G APC Missense_Mutation p.L620V 0.21 possibly_damaging(0.767) TCGA-77-A5GB-01 5 133738577 133738577 G A CDKN2AIPNL 3'UTR 0.26 TCGA-77-A5GB-01 5 137906690 137906690 G C HSPA9 Silent p.L123L 0.13 TCGA-77-A5GB-01 5 177570702 177570702 C T RMND5B Silent p.H167H 0.10 TCGA-77-A5GB-01 6 129663609 129663609 A G LAMA2 Missense_Mutation p.N1478S 0.15 tolerated(0.12) benign(0.323) TCGA-77-A5GB-01 6 148865263 148865263 C T SASH1 Missense_Mutation p.S886F 0.15 deleterious_low_confidence(0.02) benign(0.149) TCGA-77-A5GB-01 6 166580150 166580150 G A T Missense_Mutation p.A134V 0.19 deleterious(0) possibly_damaging(0.467) TCGA-77-A5GB-01 6 26123904 26123904 C G HIST1H2BC Missense_Mutation p.E77Q 0.15 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-77-A5GB-01 6 2890748 2890748 C T SERPINB9 Missense_Mutation p.M260I 0.19 deleterious(0.02) benign(0.364) TCGA-77-A5GB-01 6 29644676 29644676 C T ZFP57 Silent p.R35R 0.10 TCGA-77-A5GB-01 6 34664264 34664264 G A C6orf106 Silent p.L39L 0.26 TCGA-77-A5GB-01 6 37141746 37141746 G C PIM1 Missense_Mutation p.R274T 0.16 tolerated(0.07) possibly_damaging(0.721) TCGA-77-A5GB-01 6 38980351 38980351 C G DNAH8 Missense_Mutation p.S4334C 0.18 possibly_damaging(0.519) TCGA-77-A5GB-01 6 42152513 42152513 A T GUCA1B 3'UTR 0.13 TCGA-77-A5GB-01 6 43273988 43273988 T A CRIP3 Missense_Mutation p.H155L 0.10 tolerated(0.06) benign(0.006) TCGA-77-A5GB-01 6 43499278 43499278 G C XPO5 Missense_Mutation p.P827A 0.10 tolerated(0.07) benign(0.073) TCGA-77-A5GB-01 7 100454534 100454534 G T SLC12A9 Missense_Mutation p.G165C 0.21 deleterious(0.01) probably_damaging(0.976) TCGA-77-A5GB-01 7 148769315 148769315 C T ZNF786 Silent p.E183E 0.08 TCGA-77-A5GB-01 7 1513815 1513815 G A INTS1 Missense_Mutation p.R1940C 0.28 deleterious(0.03) benign(0.359) TCGA-77-A5GB-01 7 151859453 151859453 C G KMT2C Missense_Mutation p.E3737Q 0.14 possibly_damaging(0.811) TCGA-77-A5GB-01 7 23309596 23309596 G A GPNMB Missense_Mutation p.E423K 0.23 tolerated(0.06) probably_damaging(0.928) TCGA-77-A5GB-01 7 43508633 43508633 A G HECW1 Missense_Mutation p.I1010V 0.14 tolerated(0.13) benign(0.033) TCGA-77-A5GB-01 7 62752452 62752452 G C ZNF733P RNA 0.13 TCGA-77-A5GB-01 7 66458201 66458201 C T SBDS Intron 0.22 TCGA-77-A5GB-01 7 82544871 82544871 C A PCLO Missense_Mutation p.G4144V 0.13 unknown(0) TCGA-77-A5GB-01 8 116632149 116632149 G A TRPS1 Missense_Mutation p.T59M 0.10 deleterious_low_confidence(0) benign(0.213) TCGA-77-A5GB-01 8 132968029 132968031 CTT - EFR3A In_Frame_Del p.S220del 0.08 TCGA-77-A5GB-01 8 142227233 142227233 C G SLC45A4 Missense_Mutation p.C511S 0.05 deleterious(0.03) probably_damaging(1) TCGA-77-A5GB-01 8 144991005 144991005 C G PLEC Missense_Mutation p.E4465D 0.13 possibly_damaging(0.531) TCGA-77-A5GB-01 8 144991007 144991007 C T PLEC Missense_Mutation p.E4465K 0.13 probably_damaging(0.909) TCGA-77-A5GB-01 8 144991197 144991197 C G PLEC Missense_Mutation p.R4401S 0.15 possibly_damaging(0.599) TCGA-77-A5GB-01 8 145753353 145753353 C G C8orf82 Intron 0.10 TCGA-77-A5GB-01 8 54142330 54142330 G T OPRK1 Missense_Mutation p.L224I 0.15 tolerated(0.16) benign(0.014) TCGA-77-A5GB-01 8 87081758 87081758 C A PSKH2 Missense_Mutation p.A32S 0.06 tolerated(0.82) benign(0.003) TCGA-77-A5GB-01 9 128284008 128284008 G C MAPKAP1 Intron 0.12 TCGA-77-A5GB-01 9 130494378 130494378 C T TOR2A Missense_Mutation p.D301N 0.10 tolerated(0.11) benign(0.002) TCGA-77-A5GB-01 9 134183544 134183544 G A PPAPDC3 Missense_Mutation p.R229H 0.14 deleterious(0) possibly_damaging(0.704) TCGA-77-A5GB-01 9 140093629 140093629 A G TPRN Missense_Mutation p.L512P 0.15 tolerated(0.13) probably_damaging(0.989) TCGA-77-A5GB-01 9 35674011 35674011 C G CA9 Missense_Mutation p.P19A 0.04 tolerated_low_confidence(0.4) unknown(0) TCGA-77-A5GB-01 9 71549944 71549944 G T PIP5K1B Missense_Mutation p.S447I 0.11 deleterious(0.03) benign(0.032) TCGA-77-A5GB-01 9 79824407 79824407 C G VPS13A Missense_Mutation p.Q152E 0.10 deleterious(0) possibly_damaging(0.624) TCGA-77-A5GB-01 X 103499484 103499484 C G ESX1 Missense_Mutation p.S16T 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.483) TCGA-77-A5GB-01 X 107084390 107084390 C T MID2 Silent p.C165C 0.31 TCGA-77-A5GB-01 X 138713599 138713599 G A MCF2 Silent p.G141G 0.18 TCGA-77-A5GB-01 X 18198664 18198664 A G BEND2 Silent p.S465S 0.31 TCGA-77-A5GB-01 X 30237630 30237630 G A MAGEB2 Silent p.L311L 0.19 TCGA-77-A5GB-01 X 41064704 41064704 G - USP9X Frame_Shift_Del p.R1658Hfs*30 0.17 TCGA-77-A5GB-01 X 54784600 54784600 G T ITIH6 Nonsense_Mutation p.S636* 0.17 TCGA-77-A5GF-01 10 33196033 33196033 G C ITGB1 Intron 0.05 TCGA-77-A5GF-01 10 54528093 54528093 A C MBL2 Missense_Mutation p.L184R 0.45 deleterious(0) probably_damaging(0.998) TCGA-77-A5GF-01 10 68526077 68526077 T A CTNNA3 Missense_Mutation p.K409M 0.46 deleterious(0) possibly_damaging(0.881) TCGA-77-A5GF-01 11 123676132 123676132 A T OR6M1 Missense_Mutation p.I309K 0.09 tolerated(0.25) benign(0.002) TCGA-77-A5GF-01 11 50003889 50003889 C A OR4C12 Missense_Mutation p.S50I 0.22 deleterious_low_confidence(0) possibly_damaging(0.55) TCGA-77-A5GF-01 11 55036730 55036730 G C TRIM48 Silent p.V197V 0.57 TCGA-77-A5GF-01 11 55904723 55904723 C T OR8J3 Missense_Mutation p.V158M 0.16 tolerated(0.13) benign(0.206) TCGA-77-A5GF-01 11 56143595 56143595 C T OR8U1 Missense_Mutation p.L166F 0.19 deleterious(0.02) benign(0.309) TCGA-77-A5GF-01 11 59271773 59271773 C T OR4D11 Missense_Mutation p.S242F 0.12 deleterious(0) possibly_damaging(0.892) TCGA-77-A5GF-01 11 86209150 86209150 T A ME3 Missense_Mutation p.D187V 0.08 deleterious(0) probably_damaging(0.997) TCGA-77-A5GF-01 12 10218210 10218210 T C CLEC9A Silent p.Y235Y 0.41 TCGA-77-A5GF-01 12 113496109 113496109 C G DTX1 Missense_Mutation p.R38G 0.30 deleterious(0) benign(0.249) TCGA-77-A5GF-01 12 113835062 113835062 G A SDS Silent p.D187D 0.36 TCGA-77-A5GF-01 12 116435034 116435034 T C MED13L Silent p.T857T 0.46 TCGA-77-A5GF-01 12 12397555 12397555 G C LRP6 Missense_Mutation p.D30E 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-77-A5GF-01 12 128899758 128899758 G T TMEM132C Silent p.G189G 0.33 TCGA-77-A5GF-01 12 16189274 16189274 C T DERA Nonsense_Mutation p.R287* 0.23 TCGA-77-A5GF-01 12 21422683 21422683 C A SLCO1A2 Missense_Mutation p.L604F 0.38 deleterious(0.02) benign(0.12) TCGA-77-A5GF-01 12 32145394 32145396 AGA GG KIAA1551 Frame_Shift_Del p.M1725Cfs*22 0.20 TCGA-77-A5GF-01 12 49440539 49440539 C G KMT2D Missense_Mutation p.C1424S 0.09 probably_damaging(0.997) TCGA-77-A5GF-01 13 28830435 28830435 C T PAN3 Missense_Mutation p.S336L 0.18 deleterious(0) probably_damaging(0.963) TCGA-77-A5GF-01 13 32915195 32915195 A T BRCA2 Missense_Mutation p.M2235L 0.65 deleterious(0) probably_damaging(0.994) TCGA-77-A5GF-01 13 44455314 44455314 A G LACC1 Missense_Mutation p.T65A 0.61 tolerated_low_confidence(0.61) benign(0.002) TCGA-77-A5GF-01 14 105416441 105416441 C G AHNAK2 Missense_Mutation p.E1783Q 0.67 possibly_damaging(0.882) TCGA-77-A5GF-01 14 21964752 21964752 G T TOX4 Silent p.V618V 0.55 TCGA-77-A5GF-01 14 88477333 88477333 G A GPR65 Missense_Mutation p.E48K 0.53 deleterious(0) probably_damaging(1) TCGA-77-A5GF-01 15 21071285 21071285 G A POTEB2 Missense_Mutation p.A109V 0.15 deleterious(0.01) probably_damaging(0.971) TCGA-77-A5GF-01 15 25448309 25448309 C T SNORD115-20 5'Flank 0.35 TCGA-77-A5GF-01 15 33194204 33194204 C T FMN1 Missense_Mutation p.E916K 0.37 deleterious(0.02) possibly_damaging(0.882) TCGA-77-A5GF-01 15 74277189 74277189 C T STOML1 Missense_Mutation p.E272K 0.23 tolerated(0.16) benign(0.015) TCGA-77-A5GF-01 15 74925045 74925045 T A EDC3 Missense_Mutation p.I479F 0.30 deleterious(0) benign(0.121) TCGA-77-A5GF-01 16 33965564 33965564 C G RNA5-8SP2 RNA 0.24 TCGA-77-A5GF-01 16 57550247 57550247 C A CCDC102A Silent p.R459R 0.40 TCGA-77-A5GF-01 16 67859897 67859897 G A TSNAXIP1 Silent p.L300L 0.26 TCGA-77-A5GF-01 16 67981296 67981296 C G SLC12A4 Silent p.L672L 0.24 TCGA-77-A5GF-01 16 68009653 68009653 C A DPEP3 3'UTR 0.27 TCGA-77-A5GF-01 16 70030013 70030013 G A PDXDC2P RNA 0.33 TCGA-77-A5GF-01 16 71571740 71571740 A G CHST4 Silent p.%3D 0.30 TCGA-77-A5GF-01 16 81078275 81078275 G A ATMIN Silent p.L724L 0.35 TCGA-77-A5GF-01 17 15519007 15519007 A T RP11-385D13.1 Missense_Mutation p.S518T 0.41 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-77-A5GF-01 17 19459103 19459104 CC T SLC47A1 Intron 0.40 TCGA-77-A5GF-01 17 34590411 34590411 C A TBC1D3C Missense_Mutation p.R15L 0.75 deleterious(0) probably_damaging(0.975) TCGA-77-A5GF-01 17 39959596 39959596 C A LEPREL4 Missense_Mutation p.G412C 0.40 deleterious(0) probably_damaging(0.937) TCGA-77-A5GF-01 17 42744897 42744897 C G C17orf104 Missense_Mutation p.P540A 0.23 deleterious(0.01) benign(0.204) TCGA-77-A5GF-01 17 43213457 43213457 G A ACBD4 Intron 0.29 TCGA-77-A5GF-01 17 49054527 49054527 A T SPAG9 Nonsense_Mutation p.C1155* 0.30 TCGA-77-A5GF-01 17 7578461 7578461 C A TP53 Missense_Mutation p.V157F 0.76 deleterious(0) probably_damaging(0.997) TCGA-77-A5GF-01 18 19244192 19244192 C T ABHD3 Splice_Site p.X186_splice 0.17 TCGA-77-A5GF-01 18 30093488 30093488 T C WBP11P1 RNA 0.33 TCGA-77-A5GF-01 18 55711844 55711844 C T NEDD4L 5'UTR 0.24 TCGA-77-A5GF-01 18 67816181 67816181 G T RTTN Silent p.T755T 0.33 TCGA-77-A5GF-01 19 10103517 10103517 G A COL5A3 Missense_Mutation p.P612S 0.26 unknown(0) TCGA-77-A5GF-01 19 13368206 13368206 T A CACNA1A Missense_Mutation p.Q1516H 0.33 possibly_damaging(0.891) TCGA-77-A5GF-01 19 1430254 1430254 C - DAZAP1 Frame_Shift_Del p.P257Rfs*78 0.10 TCGA-77-A5GF-01 19 35646303 35646303 C A FXYD5 5'UTR 0.64 TCGA-77-A5GF-01 19 37853838 37853838 G A HKR1 Missense_Mutation p.G381R 0.18 deleterious(0.01) probably_damaging(0.963) TCGA-77-A5GF-01 19 38993275 38993276 TA - RYR1 Frame_Shift_Del p.M2582Afs*19 0.10 TCGA-77-A5GF-01 19 6981120 6981120 C T EMR4P RNA 0.44 TCGA-77-A5GF-01 19 9056559 9056559 C G MUC16 Missense_Mutation p.R10296P 0.35 benign(0) TCGA-77-A5GF-01 1 153751179 153751179 G A SLC27A3 Silent p.L535L 0.05 TCGA-77-A5GF-01 1 158911878 158911878 T C PYHIN1 Missense_Mutation p.S231P 0.37 tolerated(1) benign(0.002) TCGA-77-A5GF-01 1 159922174 159922174 T A SLAMF9 Missense_Mutation p.E181V 0.31 deleterious(0) probably_damaging(0.998) TCGA-77-A5GF-01 1 175360506 175360506 C T TNR Silent p.K475K 0.32 TCGA-77-A5GF-01 1 205312454 205312454 G A KLHDC8A Silent p.P93P 0.20 TCGA-77-A5GF-01 1 211486890 211486890 C T RCOR3 Missense_Mutation p.P481L 0.17 deleterious(0) probably_damaging(0.943) TCGA-77-A5GF-01 1 23707884 23707884 T C TCEA3 3'UTR 0.43 TCGA-77-A5GF-01 1 247607997 247607997 C T NLRP3 Missense_Mutation p.S962F 0.12 tolerated(0.06) possibly_damaging(0.897) TCGA-77-A5GF-01 1 247768917 247768917 G T OR2G3 Missense_Mutation p.M10I 0.26 tolerated(0.16) benign(0) TCGA-77-A5GF-01 1 248084575 248084575 G C OR2T8 Missense_Mutation p.G86R 0.19 deleterious(0.01) possibly_damaging(0.88) TCGA-77-A5GF-01 1 27099478 27099478 G T ARID1A Missense_Mutation p.A1239S 0.55 unknown(0) TCGA-77-A5GF-01 1 87045207 87045207 G T CLCA4 Missense_Mutation p.V765F 0.65 tolerated(0.97) benign(0.001) TCGA-77-A5GF-01 22 25308636 25308636 G T SGSM1 Nonsense_Mutation p.E1004* 0.50 TCGA-77-A5GF-01 22 32628920 32628920 C G SLC5A4 Silent p.V329V 0.30 TCGA-77-A5GF-01 22 38541498 38541498 G A PLA2G6 Silent p.H124H 0.22 TCGA-77-A5GF-01 22 39085353 39085353 T C JOSD1 Missense_Mutation p.M88V 0.31 deleterious(0.03) benign(0.248) TCGA-77-A5GF-01 22 45728342 45728342 C G FAM118A Missense_Mutation p.L230V 0.40 tolerated(0.15) possibly_damaging(0.868) TCGA-77-A5GF-01 2 113418738 113418738 G T SLC20A1 Missense_Mutation p.A605S 0.26 tolerated(0.08) benign(0.12) TCGA-77-A5GF-01 2 128327478 128327478 C T MYO7B Silent p.I195I 0.27 TCGA-77-A5GF-01 2 160284924 160284924 C G BAZ2B Missense_Mutation p.Q754H 0.27 probably_damaging(0.961) TCGA-77-A5GF-01 2 166848708 166848708 C T SCN1A Missense_Mutation p.A1693T 0.05 deleterious(0) probably_damaging(0.914) TCGA-77-A5GF-01 2 178098957 178098957 G A NFE2L2 Missense_Mutation p.L30F 0.33 deleterious(0) probably_damaging(1) TCGA-77-A5GF-01 2 179428553 179428553 G T TTN Missense_Mutation p.P27436T 0.33 TCGA-77-A5GF-01 2 179591992 179591992 C T TTN Silent p.V6700V 0.24 TCGA-77-A5GF-01 2 197171857 197171857 C T HECW2 Missense_Mutation p.A896T 0.29 tolerated(0.63) benign(0.013) TCGA-77-A5GF-01 2 232018374 232018374 G A PSMD1 Missense_Mutation p.D738N 0.31 deleterious(0) benign(0.241) TCGA-77-A5GF-01 2 232576121 232576121 G T PTMA Missense_Mutation p.G37W 0.20 deleterious(0) unknown(0) TCGA-77-A5GF-01 2 232894761 232894761 G T DIS3L2 Missense_Mutation p.V113L 0.35 tolerated(0.07) possibly_damaging(0.488) TCGA-77-A5GF-01 2 236957924 236957924 A G AGAP1 Missense_Mutation p.R705G 0.26 deleterious(0) possibly_damaging(0.9) TCGA-77-A5GF-01 2 29474043 29474043 C T ALK Missense_Mutation p.S711N 0.33 tolerated(0.31) possibly_damaging(0.529) TCGA-77-A5GF-01 2 74652618 74652618 G A WDR54 Silent p.E291E 0.19 TCGA-77-A5GF-01 2 74689355 74689355 G A MOGS Missense_Mutation p.H521Y 0.29 tolerated(0.55) benign(0.004) TCGA-77-A5GF-01 2 89513049 89513049 G C IGKV1-27 Missense_Mutation p.I70M 0.21 deleterious(0.01) possibly_damaging(0.613) TCGA-77-A5GF-01 2 98996802 98996802 C A CNGA3 Missense_Mutation p.A127E 0.21 tolerated(0.38) benign(0.001) TCGA-77-A5GF-01 3 113184568 113184568 G C SPICE1 Missense_Mutation p.H407D 0.24 deleterious(0) probably_damaging(0.999) TCGA-77-A5GF-01 3 134080577 134080577 T A AMOTL2 Missense_Mutation p.Q451L 0.22 deleterious(0.01) probably_damaging(0.977) TCGA-77-A5GF-01 3 134264516 134264516 G T CEP63 Missense_Mutation p.R215L 0.43 deleterious(0) possibly_damaging(0.843) TCGA-77-A5GF-01 3 150931925 150931925 G C P2RY14 Silent p.L60L 0.56 TCGA-77-A5GF-01 3 159710889 159710889 T A IL12A Missense_Mutation p.C119S 0.56 deleterious(0) probably_damaging(1) TCGA-77-A5GF-01 3 45801351 45801351 G T SLC6A20 Missense_Mutation p.Q543K 0.15 tolerated(0.35) benign(0.012) TCGA-77-A5GF-01 3 48336290 48336290 G C NME6 Missense_Mutation p.S141C 0.53 deleterious(0.02) benign(0.356) TCGA-77-A5GF-01 3 48630224 48630224 G T COL7A1 Missense_Mutation p.P277Q 0.70 unknown(0) TCGA-77-A5GF-01 3 79638983 79638983 G A ROBO1 Missense_Mutation p.L27F 0.55 tolerated_low_confidence(0.17) benign(0) TCGA-77-A5GF-01 4 144447471 144447471 G C SMARCA5 Missense_Mutation p.G220A 0.07 tolerated(0.07) possibly_damaging(0.735) TCGA-77-A5GF-01 4 158233951 158233951 A G GRIA2 Missense_Mutation p.Q197R 0.52 tolerated(0.06) benign(0.377) TCGA-77-A5GF-01 4 70346283 70346283 C A UGT2B4 3'UTR 0.60 TCGA-77-A5GF-01 4 76927299 76927300 AC - CXCL9 Splice_Site p.X64_splice 0.37 TCGA-77-A5GF-01 5 132227904 132227904 C - AFF4 Frame_Shift_Del p.K863Nfs*63 0.30 TCGA-77-A5GF-01 5 140595661 140595661 G A PCDHB13 Missense_Mutation p.A656T 0.09 deleterious_low_confidence(0.01) benign(0.225) TCGA-77-A5GF-01 5 141019130 141019130 G A RELL2 Silent p.K139K 0.58 TCGA-77-A5GF-01 5 16764393 16764393 C A MYO10 Missense_Mutation p.G431V 0.03 deleterious(0) probably_damaging(1) TCGA-77-A5GF-01 5 168212983 168212983 C T SLIT3 Silent p.L360L 0.10 TCGA-77-A5GF-01 5 174869338 174869338 T A DRD1 Missense_Mutation p.Q255H 0.55 tolerated(0.67) possibly_damaging(0.905) TCGA-77-A5GF-01 6 130762103 130762103 G T TMEM200A Missense_Mutation p.R179M 0.33 tolerated(0.09) benign(0.041) TCGA-77-A5GF-01 6 130762104 130762104 G T TMEM200A Missense_Mutation p.R179S 0.35 tolerated(0.14) benign(0.001) TCGA-77-A5GF-01 6 159653501 159653501 G T FNDC1 Missense_Mutation p.A653S 0.35 deleterious_low_confidence(0.01) unknown(0) TCGA-77-A5GF-01 6 167754805 167754805 G T TTLL2 Nonsense_Mutation p.E473* 0.06 TCGA-77-A5GF-01 6 29395352 29395352 G T OR11A1 Missense_Mutation p.P23T 0.21 deleterious(0.04) benign(0.043) TCGA-77-A5GF-01 6 31783447 31783447 G C HSPA1A 5'UTR 0.21 TCGA-77-A5GF-01 6 33656066 33656066 C T ITPR3 Silent p.G2142G 0.27 TCGA-77-A5GF-01 6 3850591 3850591 C T FAM50B Silent p.D182D 0.10 TCGA-77-A5GF-01 6 57398161 57398161 G C PRIM2 Missense_Mutation p.M288I 0.10 deleterious(0.03) benign(0.299) TCGA-77-A5GF-01 6 656905 656905 C A HUS1B Nonsense_Mutation p.E14* 0.47 TCGA-77-A5GF-01 6 84884551 84884551 G C KIAA1009 Missense_Mutation p.F640L 0.56 tolerated(0.81) probably_damaging(0.997) TCGA-77-A5GF-01 6 97051605 97051605 A T FHL5 Missense_Mutation p.N39I 0.35 deleterious(0) probably_damaging(0.955) TCGA-77-A5GF-01 6 97052625 97052625 G C FHL5 Splice_Site p.X54_splice 0.35 TCGA-77-A5GF-01 6 97052626 97052626 G T FHL5 Missense_Mutation p.D54Y 0.35 deleterious(0.03) probably_damaging(0.995) TCGA-77-A5GF-01 7 107613476 107613476 C T LAMB1 Missense_Mutation p.R508Q 0.61 deleterious(0.01) probably_damaging(0.987) TCGA-77-A5GF-01 7 113517941 113517941 G T PPP1R3A Nonsense_Mutation p.S1069* 0.12 TCGA-77-A5GF-01 7 113518481 113518481 G C PPP1R3A Nonsense_Mutation p.S889* 0.38 TCGA-77-A5GF-01 7 117450984 117450984 C T CTTNBP2 Silent p.P83P 0.50 TCGA-77-A5GF-01 7 127670714 127670714 C T LRRC4 5'UTR 0.62 TCGA-77-A5GF-01 7 129663532 129663532 C A ZC3HC1 Missense_Mutation p.R351L 0.07 deleterious(0) possibly_damaging(0.8) TCGA-77-A5GF-01 7 148288154 148288154 C A C7orf33 Missense_Mutation p.A46D 0.56 deleterious_low_confidence(0.05) benign(0.016) TCGA-77-A5GF-01 7 150840470 150840470 G A AGAP3 Silent p.K772K 0.51 TCGA-77-A5GF-01 7 5920474 5920474 G T OCM 5'UTR 0.30 TCGA-77-A5GF-01 7 6774965 6774965 C T PMS2CL RNA 0.37 TCGA-77-A5GF-01 7 73932631 73932631 G A GTF2IRD1 Missense_Mutation p.R227H 0.09 tolerated(0.07) benign(0.007) TCGA-77-A5GF-01 7 76058831 76058831 G T ZP3 Splice_Site p.X105_splice 0.60 TCGA-77-A5GF-01 7 98249075 98249075 G A NPTX2 Missense_Mutation p.E183K 0.17 tolerated(0.14) probably_damaging(0.943) TCGA-77-A5GF-01 8 116616667 116616667 T C TRPS1 Missense_Mutation p.K510R 0.33 tolerated_low_confidence(0.37) possibly_damaging(0.716) TCGA-77-A5GF-01 8 35453106 35453106 A T UNC5D Silent p.G167G 0.07 TCGA-77-A5GF-01 8 77620157 77620157 G T ZFHX4 Missense_Mutation p.K989N 0.04 possibly_damaging(0.607) TCGA-77-A5GF-01 9 100124634 100124634 G A CCDC180 Silent p.S1315S 0.03 TCGA-77-A5GF-01 9 101832081 101832081 G A COL15A1 Silent p.K1360K 0.09 TCGA-77-A5GF-01 9 104314940 104314941 AG - RNF20 Frame_Shift_Del p.D605Ffs*3 0.31 TCGA-77-A5GF-01 9 107331510 107331510 C T OR13C8 Missense_Mutation p.P21L 0.48 deleterious(0.01) probably_damaging(0.998) TCGA-77-A5GF-01 9 133954582 133954582 T C LAMC3 Missense_Mutation p.L1275P 0.81 deleterious(0.01) probably_damaging(0.977) TCGA-77-A5GF-01 9 135983376 135983376 G A RALGDS Missense_Mutation p.A399V 0.06 tolerated(0.09) unknown(0) TCGA-77-A5GF-01 9 21974792 21974793 - C CDKN2A Frame_Shift_Ins p.S12Cfs*3 0.35 TCGA-77-A5GF-01 9 35853508 35853508 C T TMEM8B Missense_Mutation p.R364C 0.49 deleterious(0) probably_damaging(0.963) TCGA-77-A5GF-01 X 100667839 100667839 G T HNRNPH2 Missense_Mutation p.G288V 0.80 deleterious(0.02) probably_damaging(0.937) TCGA-77-A5GF-01 X 12939626 12939626 G T TLR8 Missense_Mutation p.V823F 0.56 tolerated(0.48) possibly_damaging(0.704) TCGA-77-A5GF-01 X 34148116 34148116 C A FAM47A Missense_Mutation p.R760S 0.70 deleterious(0) probably_damaging(0.943) TCGA-77-A5GF-01 X 41091665 41091665 A T USP9X Missense_Mutation p.Y2534F 0.72 tolerated_low_confidence(0.11) benign(0.004) TCGA-77-A5GH-01 10 106974326 106974326 G T SORCS3 Silent p.V834V 0.15 TCGA-77-A5GH-01 10 115515071 115515071 G T PLEKHS1 Intron 0.23 TCGA-77-A5GH-01 10 115609880 115609880 G C DCLRE1A Missense_Mutation p.S328R 0.11 deleterious(0.01) possibly_damaging(0.671) TCGA-77-A5GH-01 10 129903800 129903800 C A MKI67 Missense_Mutation p.A2102S 0.18 tolerated(0.73) benign(0.131) TCGA-77-A5GH-01 10 26562615 26562615 G T GAD2 Silent p.L381L 0.24 TCGA-77-A5GH-01 10 27444332 27444332 G T MASTL 5'UTR 0.28 TCGA-77-A5GH-01 10 29821630 29821630 G A SVIL Nonsense_Mutation p.Q556* 0.18 TCGA-77-A5GH-01 10 35929472 35929472 C A FZD8 Missense_Mutation p.V296F 0.12 deleterious(0) probably_damaging(0.996) TCGA-77-A5GH-01 10 518459 518459 C A DIP2C Missense_Mutation p.R63L 0.21 tolerated(0.17) probably_damaging(0.982) TCGA-77-A5GH-01 10 54074806 54074806 C T DKK1 Missense_Mutation p.R123C 0.10 deleterious(0) probably_damaging(1) TCGA-77-A5GH-01 10 60148525 60148525 G C TFAM Missense_Mutation p.L129F 0.22 tolerated(0.1) benign(0.202) TCGA-77-A5GH-01 10 6265947 6265947 C T PFKFB3 Missense_Mutation p.L414F 0.22 probably_damaging(0.999) TCGA-77-A5GH-01 10 64573620 64573620 G C EGR2 Missense_Mutation p.P260A 0.05 deleterious(0) possibly_damaging(0.811) TCGA-77-A5GH-01 10 69714353 69714353 T G HERC4 Missense_Mutation p.K787T 0.23 tolerated(0.37) benign(0.043) TCGA-77-A5GH-01 10 75868769 75868769 A G VCL Missense_Mutation p.E867G 0.17 tolerated(0.34) probably_damaging(0.998) TCGA-77-A5GH-01 10 96454702 96454702 G T CYP2C18 Silent p.L170L 0.22 TCGA-77-A5GH-01 11 108044327 108044327 C A NPAT Nonsense_Mutation p.E462* 0.21 TCGA-77-A5GH-01 11 118220510 118220510 G A CD3G Silent p.L44L 0.21 TCGA-77-A5GH-01 11 124749471 124749471 G T ROBO3 Missense_Mutation p.D1266Y 0.19 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-77-A5GH-01 11 125887134 125887134 C - CDON Frame_Shift_Del p.Q260Rfs*40 0.20 TCGA-77-A5GH-01 11 1263390 1263390 C A MUC5B Silent p.T1760T 0.22 TCGA-77-A5GH-01 11 17409429 17409429 G A KCNJ11 Silent p.H70H 0.22 TCGA-77-A5GH-01 11 2591922 2591922 G T KCNQ1 Missense_Mutation p.R181L 0.22 tolerated(0.13) probably_damaging(0.992) TCGA-77-A5GH-01 11 28057870 28057870 C G KIF18A Missense_Mutation p.E764Q 0.04 tolerated(0.51) benign(0.007) TCGA-77-A5GH-01 11 320840 320840 C T IFITM3 5'UTR 0.09 TCGA-77-A5GH-01 11 33689527 33689527 C A KIAA1549L Missense_Mutation p.L1793M 0.17 deleterious(0) probably_damaging(0.999) TCGA-77-A5GH-01 11 4148010 4148010 G A RRM1 Missense_Mutation p.V473I 0.06 tolerated_low_confidence(0.49) benign(0.002) TCGA-77-A5GH-01 11 4674732 4674732 C T OR51E1 3'UTR 0.12 TCGA-77-A5GH-01 11 47381539 47381539 G T SPI1 Missense_Mutation p.F66L 0.14 tolerated(0.26) benign(0.384) TCGA-77-A5GH-01 11 48239126 48239126 C G OR4B1 Silent p.L255L 0.10 TCGA-77-A5GH-01 11 55371020 55371020 G C OR4C11 Missense_Mutation p.T277R 0.20 deleterious(0) probably_damaging(0.947) TCGA-77-A5GH-01 11 56237314 56237314 G A OR5M3 Silent p.L220L 0.05 TCGA-77-A5GH-01 11 56310498 56310498 G T OR5M11 Missense_Mutation p.P79Q 0.26 deleterious(0) probably_damaging(0.993) TCGA-77-A5GH-01 11 56380060 56380060 C A OR5M1 Nonsense_Mutation p.G307* 0.22 TCGA-77-A5GH-01 11 57177495 57177495 A C SLC43A3 Missense_Mutation p.I387S 0.27 tolerated(0.16) benign(0.006) TCGA-77-A5GH-01 11 57995516 57995516 G T OR10Q1 Missense_Mutation p.Q278K 0.20 tolerated(0.37) benign(0.033) TCGA-77-A5GH-01 11 58275270 58275270 C A OR5B21 Silent p.V103V 0.19 TCGA-77-A5GH-01 11 58338118 58338118 G A LPXN Missense_Mutation p.L33F 0.12 tolerated(0.84) benign(0.002) TCGA-77-A5GH-01 11 6023929 6023929 T A OR56A4 Silent p.P150P 0.10 TCGA-77-A5GH-01 11 64338451 64338451 G A SLC22A11 Silent p.Q530Q 0.18 TCGA-77-A5GH-01 11 65347625 65347625 T A EHBP1L1 Missense_Mutation p.V129D 0.06 deleterious(0) benign(0.005) TCGA-77-A5GH-01 11 65360534 65360534 A T KCNK7 Missense_Mutation p.L289Q 0.25 deleterious(0) unknown(0) TCGA-77-A5GH-01 11 65632560 65632560 C T MUS81 Missense_Mutation p.P449S 0.17 tolerated(0.17) benign(0.119) TCGA-77-A5GH-01 11 65788975 65788975 C T CATSPER1 Silent p.R561R 0.12 TCGA-77-A5GH-01 11 6624694 6624694 T A RRP8 Silent p.V13V 0.12 TCGA-77-A5GH-01 11 66407251 66407251 G A RBM4 Silent p.E23E 0.20 TCGA-77-A5GH-01 11 67171702 67171702 T C TBC1D10C Missense_Mutation p.V10A 0.20 tolerated(0.92) benign(0) TCGA-77-A5GH-01 11 67412763 67412763 C G ACY3 Missense_Mutation p.G174A 0.13 tolerated(0.39) possibly_damaging(0.778) TCGA-77-A5GH-01 11 6898174 6898174 C A OR10A4 Missense_Mutation p.A99D 0.20 deleterious(0) possibly_damaging(0.774) TCGA-77-A5GH-01 11 6898175 6898175 C A OR10A4 Silent p.A99A 0.20 TCGA-77-A5GH-01 11 70505949 70505949 C A SHANK2 Missense_Mutation p.G683V 0.11 deleterious(0) probably_damaging(1) TCGA-77-A5GH-01 11 72145270 72145270 G C CLPB Silent p.L83L 0.08 TCGA-77-A5GH-01 11 7324551 7324551 G C SYT9 Missense_Mutation p.G143R 0.20 tolerated(0.13) benign(0.075) TCGA-77-A5GH-01 11 76372253 76372253 G A LRRC32 Silent p.S128S 0.05 TCGA-77-A5GH-01 11 76372452 76372452 C T LRRC32 Missense_Mutation p.R62Q 0.28 tolerated(1) benign(0.01) TCGA-77-A5GH-01 12 100787162 100787162 C T SLC17A8 Silent p.A163A 0.10 TCGA-77-A5GH-01 12 100796505 100796505 T C SLC17A8 Silent p.F345F 0.50 TCGA-77-A5GH-01 12 104092975 104092975 T C STAB2 Silent p.Y1228Y 0.19 TCGA-77-A5GH-01 12 10978520 10978520 T C TAS2R10 Missense_Mutation p.I117V 0.44 tolerated(0.4) benign(0.05) TCGA-77-A5GH-01 12 113448106 113448106 T C OAS2 Intron 0.16 TCGA-77-A5GH-01 12 124104607 124104607 G C DDX55 Missense_Mutation p.E575Q 0.33 deleterious(0.02) possibly_damaging(0.864) TCGA-77-A5GH-01 12 130934744 130934744 C A RIMBP2 Splice_Site p.X177_splice 0.31 TCGA-77-A5GH-01 12 132425857 132425857 G T PUS1 Missense_Mutation p.G189W 0.33 deleterious(0) probably_damaging(0.999) TCGA-77-A5GH-01 12 132475999 132475999 C G EP400 Missense_Mutation p.L893V 0.34 unknown(0) TCGA-77-A5GH-01 12 2968201 2968201 A C FOXM1 Missense_Mutation p.V670G 0.12 tolerated(0.39) benign(0.012) TCGA-77-A5GH-01 12 63544213 63544213 A G AVPR1A Missense_Mutation p.M135T 0.16 deleterious(0) probably_damaging(0.993) TCGA-77-A5GH-01 12 6677038 6677038 C T NOP2 Missense_Mutation p.R16Q 0.09 deleterious(0) probably_damaging(0.998) TCGA-77-A5GH-01 12 78513427 78513427 G T NAV3 Missense_Mutation p.G1151C 0.13 deleterious(0) probably_damaging(0.986) TCGA-77-A5GH-01 12 78594356 78594356 G C NAV3 Silent p.V2251V 0.05 TCGA-77-A5GH-01 12 79842767 79842767 T C SYT1 Missense_Mutation p.F378L 0.13 tolerated(0.3) benign(0.011) TCGA-77-A5GH-01 12 99548385 99548385 C A ANKS1B Intron 0.22 TCGA-77-A5GH-01 13 110827077 110827077 C - COL4A1 Frame_Shift_Del p.G1073Vfs*124 0.20 TCGA-77-A5GH-01 13 46542903 46542903 G C ZC3H13 Missense_Mutation p.P1259R 0.04 unknown(0) TCGA-77-A5GH-01 13 47266739 47266739 C G LRCH1 Missense_Mutation p.I361M 0.09 tolerated(0.14) benign(0.022) TCGA-77-A5GH-01 13 49089360 49089360 A G RCBTB2 Silent p.H110H 0.09 TCGA-77-A5GH-01 13 51854931 51854931 G A FAM124A Missense_Mutation p.E430K 0.23 tolerated(0.27) benign(0.098) TCGA-77-A5GH-01 13 72014664 72014664 C G DACH1 3'UTR 0.55 TCGA-77-A5GH-01 13 96258302 96258302 C T DZIP1 Missense_Mutation p.A478T 0.19 tolerated(0.2) benign(0.045) TCGA-77-A5GH-01 14 19377596 19377596 G T OR11H12 Translation_Start_Site p.M1? 0.16 tolerated_low_confidence(0.47) benign(0) TCGA-77-A5GH-01 14 60936293 60936293 T C C14orf39 Silent p.K211K 0.47 TCGA-77-A5GH-01 14 91691075 91691075 C A C14orf159 Silent p.G588G 0.21 TCGA-77-A5GH-01 15 57555370 57555370 A G TCF12 Missense_Mutation p.E548G 0.30 deleterious(0.01) possibly_damaging(0.64) TCGA-77-A5GH-01 15 62217710 62217710 G A VPS13C Missense_Mutation p.T2185M 0.31 tolerated(0.15) benign(0.007) TCGA-77-A5GH-01 15 64444934 64444934 A C SNX22 Missense_Mutation p.Y86S 0.46 deleterious(0) probably_damaging(0.993) TCGA-77-A5GH-01 15 81294678 81294678 C T MESDC1 Silent p.I22I 0.47 TCGA-77-A5GH-01 16 23568552 23568552 C T EARS2 Missense_Mutation p.R38Q 0.12 deleterious(0) probably_damaging(1) TCGA-77-A5GH-01 16 30441233 30441233 G C DCTPP1 Missense_Mutation p.F23L 0.09 deleterious(0.01) possibly_damaging(0.888) TCGA-77-A5GH-01 16 55893575 55893575 C A CES5A Missense_Mutation p.V343F 0.31 deleterious(0) probably_damaging(0.954) TCGA-77-A5GH-01 16 58752445 58752445 C G GOT2 Missense_Mutation p.V195L 0.26 tolerated(1) benign(0) TCGA-77-A5GH-01 16 601372 601372 C T CAPN15 Silent p.L713L 0.31 TCGA-77-A5GH-01 16 70713947 70713947 C T MTSS1L Missense_Mutation p.D73N 0.21 deleterious(0) possibly_damaging(0.532) TCGA-77-A5GH-01 16 8736343 8736343 G C METTL22 Missense_Mutation p.D311H 0.39 deleterious(0.03) probably_damaging(0.993) TCGA-77-A5GH-01 17 10248576 10248576 C G MYH13 Missense_Mutation p.E509D 0.25 tolerated(0.4) benign(0.002) TCGA-77-A5GH-01 17 40444068 40444068 G C STAT5A Missense_Mutation p.E122Q 0.29 tolerated(0.48) benign(0.016) TCGA-77-A5GH-01 17 43311538 43311538 C T FMNL1 Silent p.S195S 0.25 TCGA-77-A5GH-01 17 46198787 46198787 C T SNX11 Missense_Mutation p.L244F 0.06 tolerated_low_confidence(0.11) benign(0) TCGA-77-A5GH-01 17 47395152 47395152 T C ZNF652 5'UTR 0.36 TCGA-77-A5GH-01 17 5064842 5064842 C G USP6 Missense_Mutation p.Q950E 0.27 tolerated_low_confidence(0.61) probably_damaging(0.993) TCGA-77-A5GH-01 17 62007163 62007163 G A CD79B Silent p.F173F 0.29 TCGA-77-A5GH-01 17 62133089 62133089 C T ERN1 Missense_Mutation p.G540S 0.07 tolerated(0.75) benign(0.002) TCGA-77-A5GH-01 17 66924121 66924121 G T ABCA8 Missense_Mutation p.F403L 0.40 tolerated(0.07) possibly_damaging(0.461) TCGA-77-A5GH-01 17 67003925 67003925 C G ABCA9 Missense_Mutation p.G1137A 0.23 deleterious(0.02) benign(0.367) TCGA-77-A5GH-01 17 74900497 74900497 A G MGAT5B Missense_Mutation p.K239R 0.42 tolerated(0.32) benign(0.011) TCGA-77-A5GH-01 17 7578457 7578457 C A TP53 Missense_Mutation p.R158L 0.28 deleterious(0) probably_damaging(0.986) TCGA-77-A5GH-01 17 7646326 7646326 C A DNAH2 Silent p.A590A 0.25 TCGA-77-A5GH-01 17 7948288 7948288 G T ALOX15B Missense_Mutation p.G273V 0.35 deleterious(0) probably_damaging(0.998) TCGA-77-A5GH-01 18 29175118 29175118 C A TTR Missense_Mutation p.T79K 0.26 deleterious(0.01) probably_damaging(0.984) TCGA-77-A5GH-01 18 32438296 32438296 C G DTNA Missense_Mutation p.A440G 0.20 deleterious(0.01) probably_damaging(0.961) TCGA-77-A5GH-01 18 32833844 32833844 C G ZSCAN30 Missense_Mutation p.S352T 0.11 tolerated(0.55) benign(0.233) TCGA-77-A5GH-01 18 51809320 51809320 C T POLI Nonsense_Mutation p.Q304* 0.12 TCGA-77-A5GH-01 18 52927218 52927218 T C TCF4 Missense_Mutation p.N446S 0.07 tolerated(0.6) possibly_damaging(0.523) TCGA-77-A5GH-01 18 65178580 65178580 G C DSEL Nonsense_Mutation p.S1099* 0.23 TCGA-77-A5GH-01 18 67406339 67406339 G C DOK6 Silent p.R246R 0.18 TCGA-77-A5GH-01 18 76752117 76752117 G T SALL3 Missense_Mutation p.E42D 0.39 tolerated(0.16) unknown(0) TCGA-77-A5GH-01 18 77246917 77246917 A G NFATC1 Missense_Mutation p.D908G 0.24 deleterious(0) probably_damaging(0.998) TCGA-77-A5GH-01 18 77473083 77473083 C T CTDP1 Silent p.G325G 0.27 TCGA-77-A5GH-01 19 11338043 11338043 C G DOCK6 Silent p.V975V 0.17 TCGA-77-A5GH-01 19 11657487 11657487 C G CNN1 Intron 0.29 TCGA-77-A5GH-01 19 13049485 13049485 C T CALR 5'UTR 0.21 TCGA-77-A5GH-01 19 14952350 14952350 G T OR7A10 Missense_Mutation p.L114I 0.33 tolerated_low_confidence(0.07) possibly_damaging(0.459) TCGA-77-A5GH-01 19 14952351 14952351 G T OR7A10 Missense_Mutation p.F113L 0.34 tolerated_low_confidence(0.11) benign(0.003) TCGA-77-A5GH-01 19 15733963 15733963 A T CYP4F8 RNA 0.31 TCGA-77-A5GH-01 19 18391885 18391885 G A JUND Missense_Mutation p.A137V 0.14 deleterious(0.02) possibly_damaging(0.893) TCGA-77-A5GH-01 19 19655341 19655341 G T CILP2 Missense_Mutation p.V663L 0.29 deleterious(0) probably_damaging(0.998) TCGA-77-A5GH-01 19 21607342 21607342 A C ZNF493 Missense_Mutation p.K627N 0.16 deleterious(0.04) probably_damaging(0.972) TCGA-77-A5GH-01 19 288099 288099 G A PPAP2C Missense_Mutation p.S63F 0.37 deleterious(0) probably_damaging(0.987) TCGA-77-A5GH-01 19 3664840 3664840 C A PIP5K1C Missense_Mutation p.G67C 0.37 deleterious(0) probably_damaging(1) TCGA-77-A5GH-01 19 38817576 38817576 C T KCNK6 Silent p.P222P 0.20 TCGA-77-A5GH-01 19 42814692 42814692 C G PRR19 Missense_Mutation p.L291V 0.25 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-77-A5GH-01 19 45681449 45681449 G C TRAPPC6A Missense_Mutation p.L10V 0.22 deleterious(0) probably_damaging(0.997) TCGA-77-A5GH-01 19 45821152 45821152 G A CKM Silent p.I93I 0.24 TCGA-77-A5GH-01 19 49573988 49573988 C A KCNA7 Missense_Mutation p.A235S 0.08 tolerated(0.45) benign(0.068) TCGA-77-A5GH-01 19 49610912 49610912 G C SNRNP70 Missense_Mutation p.G203A 0.09 tolerated(0.1) probably_damaging(0.958) TCGA-77-A5GH-01 19 51172524 51172524 C A SHANK1 Missense_Mutation p.R898I 0.19 benign(0.064) TCGA-77-A5GH-01 19 51671524 51671524 C G CTD-3187F8.14 Intron 0.27 TCGA-77-A5GH-01 19 53304910 53304910 T C ZNF28 Missense_Mutation p.Q63R 0.14 tolerated(0.24) benign(0.01) TCGA-77-A5GH-01 19 55677268 55677268 C A DNAAF3 Silent p.R130R 0.24 TCGA-77-A5GH-01 19 55738677 55738677 C T TMEM86B Missense_Mutation p.V185M 0.16 deleterious(0.04) benign(0.083) TCGA-77-A5GH-01 19 56244695 56244695 C A NLRP9 Missense_Mutation p.D168Y 0.19 deleterious(0) probably_damaging(0.942) TCGA-77-A5GH-01 19 56244696 56244696 C A NLRP9 Missense_Mutation p.L167F 0.19 deleterious(0) probably_damaging(0.998) TCGA-77-A5GH-01 19 56424031 56424031 T C NLRP13 Silent p.T384T 0.28 TCGA-77-A5GH-01 19 57326264 57326264 C G PEG3 Missense_Mutation p.Q1182H 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-77-A5GH-01 19 57987093 57987093 T C AC004076.9 Missense_Mutation p.D45G 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-77-A5GH-01 19 9011002 9011002 G A MUC16 Silent p.F12972F 0.08 TCGA-77-A5GH-01 1 100379224 100379224 A G AGL Missense_Mutation p.D1364G 0.17 deleterious(0) probably_damaging(1) TCGA-77-A5GH-01 1 101343059 101343059 G A EXTL2 Nonsense_Mutation p.Q136* 0.15 TCGA-77-A5GH-01 1 101704867 101704867 C T S1PR1 Silent p.T109T 0.18 TCGA-77-A5GH-01 1 101705023 101705036 CCTGCTAATCAGCG - S1PR1 Frame_Shift_Del p.I164Gfs*81 0.21 TCGA-77-A5GH-01 1 10720163 10720173 GTACTTGGAGG - CASZ1 Frame_Shift_Del p.A309Gfs*142 0.34 TCGA-77-A5GH-01 1 115829230 115829230 C T NGF Missense_Mutation p.V63M 0.06 tolerated(0.1) possibly_damaging(0.858) TCGA-77-A5GH-01 1 120462971 120462971 C A NOTCH2 Missense_Mutation p.R1787L 0.22 deleterious(0) probably_damaging(0.998) TCGA-77-A5GH-01 1 152127241 152127241 G A RPTN Silent p.D778D 0.26 TCGA-77-A5GH-01 1 152328907 152328907 G A FLG2 Missense_Mutation p.T452I 0.09 unknown(0) TCGA-77-A5GH-01 1 152681687 152681688 - AGCTCTGGGGGCTGCTGT LCE4A In_Frame_Ins p.G46delinsELWGLLW 0.19 TCGA-77-A5GH-01 1 155039359 155039359 G T EFNA4 Missense_Mutation p.E89D 0.35 tolerated(0.07) benign(0.075) TCGA-77-A5GH-01 1 157551332 157551332 C T FCRL4 Missense_Mutation p.R413Q 0.20 tolerated(1) benign(0) TCGA-77-A5GH-01 1 159505383 159505383 C T OR10J5 Missense_Mutation p.G139R 0.19 tolerated(1) benign(0.004) TCGA-77-A5GH-01 1 166818434 166818434 G T POGK Silent p.L206L 0.07 TCGA-77-A5GH-01 1 166926041 166926042 - AG ILDR2 Frame_Shift_Ins p.Y143Sfs*132 0.33 TCGA-77-A5GH-01 1 1685025 1685025 C G NADK Missense_Mutation p.E534Q 0.16 tolerated(0.16) possibly_damaging(0.475) TCGA-77-A5GH-01 1 16935250 16935250 T G NBPF1 5'UTR 0.06 TCGA-77-A5GH-01 1 171519353 171519353 C A PRRC2C Silent p.R1699R 0.44 TCGA-77-A5GH-01 1 173952661 173952661 C T RC3H1 Missense_Mutation p.E163K 0.18 deleterious(0) probably_damaging(0.997) TCGA-77-A5GH-01 1 175053072 175053072 G A TNN Splice_Site p.X412_splice 0.29 TCGA-77-A5GH-01 1 176659294 176659294 C A PAPPA2 Missense_Mutation p.A720E 0.23 deleterious(0) possibly_damaging(0.719) TCGA-77-A5GH-01 1 179198418 179198418 C A ABL2 Missense_Mutation p.G39W 0.37 deleterious_low_confidence(0.01) benign(0.436) TCGA-77-A5GH-01 1 179198485 179198485 C A ABL2 Missense_Mutation p.Q16H 0.26 deleterious_low_confidence(0.02) benign(0.06) TCGA-77-A5GH-01 1 184702067 184702067 C T EDEM3 Missense_Mutation p.M172I 0.26 deleterious(0.01) possibly_damaging(0.837) TCGA-77-A5GH-01 1 19503083 19503083 G A UBR4 Intron 0.11 TCGA-77-A5GH-01 1 197059109 197059109 C A ASPM Missense_Mutation p.C3312F 0.25 deleterious(0) probably_damaging(0.999) TCGA-77-A5GH-01 1 200619632 200619632 A C DDX59 Missense_Mutation p.L412R 0.33 tolerated(0.69) benign(0.013) TCGA-77-A5GH-01 1 202245449 202245449 C A LGR6 Missense_Mutation p.N148K 0.21 deleterious(0) probably_damaging(1) TCGA-77-A5GH-01 1 211654550 211654550 T A RD3 Missense_Mutation p.T70S 0.18 tolerated(1) benign(0.004) TCGA-77-A5GH-01 1 215342640 215342641 - T KCNK2 Frame_Shift_Ins p.G193Wfs*21 0.19 TCGA-77-A5GH-01 1 215933138 215933138 C A USH2A Nonsense_Mutation p.E3699* 0.19 TCGA-77-A5GH-01 1 216173752 216173752 G C USH2A Missense_Mutation p.H2160D 0.19 benign(0.001) TCGA-77-A5GH-01 1 22005927 22005927 C A USP48 Missense_Mutation p.G1031C 0.11 deleterious(0) probably_damaging(1) TCGA-77-A5GH-01 1 222717349 222717349 G C HHIPL2 Missense_Mutation p.F168L 0.04 tolerated(0.16) benign(0.269) TCGA-77-A5GH-01 1 237774128 237774128 C A RYR2 Missense_Mutation p.P1584T 0.13 probably_damaging(0.981) TCGA-77-A5GH-01 1 237774129 237774129 C A RYR2 Missense_Mutation p.P1584Q 0.13 probably_damaging(0.986) TCGA-77-A5GH-01 1 246755095 246755095 G C CNST Missense_Mutation p.L77F 0.16 deleterious(0.01) benign(0.358) TCGA-77-A5GH-01 1 247752084 247752084 C G OR2G2 Missense_Mutation p.I141M 0.03 deleterious(0) benign(0) TCGA-77-A5GH-01 1 27676210 27676210 G A SYTL1 Missense_Mutation p.R234H 0.05 deleterious(0.02) possibly_damaging(0.564) TCGA-77-A5GH-01 1 28293631 28293631 C T XKR8 Nonsense_Mutation p.Q370* 0.22 TCGA-77-A5GH-01 1 32259363 32259363 G A SPOCD1 Missense_Mutation p.T840M 0.03 tolerated(0.26) benign(0.125) TCGA-77-A5GH-01 1 34038221 34038221 G A CSMD2 Silent p.T2551T 0.18 TCGA-77-A5GH-01 1 35365317 35365317 G T DLGAP3 Missense_Mutation p.P447T 0.23 tolerated(0.1) probably_damaging(0.994) TCGA-77-A5GH-01 1 38406454 38406454 G A INPP5B Silent p.V99V 0.09 TCGA-77-A5GH-01 1 53540289 53540289 A G PODN Missense_Mutation p.K188E 0.23 tolerated(1) benign(0.001) TCGA-77-A5GH-01 1 53540336 53540336 T G PODN Missense_Mutation p.N203K 0.24 tolerated(0.05) probably_damaging(0.987) TCGA-77-A5GH-01 1 75055637 75055637 T C C1orf173 Silent p.S618S 0.17 TCGA-77-A5GH-01 1 77094318 77094318 A C ST6GALNAC3 Silent p.R249R 0.08 TCGA-77-A5GH-01 1 89575506 89575506 C T GBP2 Missense_Mutation p.E505K 0.25 tolerated(0.33) benign(0.024) TCGA-77-A5GH-01 1 92595253 92595253 G T BTBD8 Missense_Mutation p.L224F 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-77-A5GH-01 20 1629797 1629797 G T SIRPG Missense_Mutation p.P111T 0.29 tolerated(0.1) possibly_damaging(0.488) TCGA-77-A5GH-01 20 20079449 20079449 A G C20orf26 Missense_Mutation p.R284G 0.30 tolerated(0.42) benign(0) TCGA-77-A5GH-01 20 34025773 34025773 G C GDF5 5'UTR 0.14 TCGA-77-A5GH-01 20 43929962 43929962 C G MATN4 Missense_Mutation p.R255S 0.20 benign(0.002) TCGA-77-A5GH-01 20 45702852 45702852 C T EYA2 Missense_Mutation p.S180L 0.06 deleterious(0) benign(0.341) TCGA-77-A5GH-01 20 4865423 4865423 G A SLC23A2 Silent p.H206H 0.21 TCGA-77-A5GH-01 20 54970674 54970674 G A CSTF1 Silent p.L22L 0.31 TCGA-77-A5GH-01 20 55206870 55206870 G T TFAP2C Missense_Mutation p.D182Y 0.29 deleterious(0.01) benign(0.002) TCGA-77-A5GH-01 20 58448948 58448948 C G SYCP2 Missense_Mutation p.S1173T 0.17 tolerated(0.36) benign(0.117) TCGA-77-A5GH-01 21 10998282 10998282 C G TPTE RNA 0.23 TCGA-77-A5GH-01 21 11049523 11049523 G A BAGE2 RNA 0.04 TCGA-77-A5GH-01 21 34029043 34029043 C T SYNJ1 Missense_Mutation p.E956K 0.08 tolerated(0.08) possibly_damaging(0.492) TCGA-77-A5GH-01 21 43277389 43277389 C T PRDM15 Missense_Mutation p.E427K 0.25 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-77-A5GH-01 22 17663529 17663529 C T CECR1 Missense_Mutation p.D402N 0.15 tolerated(0.45) benign(0.007) TCGA-77-A5GH-01 22 29886005 29886005 G A NEFH Silent p.E792E 0.16 TCGA-77-A5GH-01 22 37769695 37769695 T A ELFN2 Missense_Mutation p.K627M 0.14 deleterious(0.01) probably_damaging(0.947) TCGA-77-A5GH-01 22 43289526 43289526 C A PACSIN2 Nonsense_Mutation p.E52* 0.38 TCGA-77-A5GH-01 22 50500078 50500078 C A MLC1 Missense_Mutation p.R356S 0.04 tolerated_low_confidence(0.1) possibly_damaging(0.6) TCGA-77-A5GH-01 22 50941908 50941908 T C LMF2 Missense_Mutation p.Q679R 0.24 tolerated(0.35) benign(0.001) TCGA-77-A5GH-01 2 101606827 101606827 A G NPAS2 Missense_Mutation p.N646S 0.17 tolerated(0.81) benign(0.001) TCGA-77-A5GH-01 2 120362786 120362786 A G PCDP1 Missense_Mutation p.T352A 0.19 tolerated(0.05) possibly_damaging(0.891) TCGA-77-A5GH-01 2 131487651 131487651 G C GPR148 Missense_Mutation p.M309I 0.06 deleterious(0.02) possibly_damaging(0.681) TCGA-77-A5GH-01 2 131521091 131521091 C G AMER3 Silent p.G482G 0.16 TCGA-77-A5GH-01 2 135743732 135743732 T C MAP3K19 Missense_Mutation p.T904A 0.08 tolerated(0.98) benign(0) TCGA-77-A5GH-01 2 135743783 135743783 A C MAP3K19 Missense_Mutation p.L887V 0.08 deleterious(0.05) benign(0.21) TCGA-77-A5GH-01 2 135743977 135743977 C G MAP3K19 Missense_Mutation p.R822T 0.07 tolerated(0.19) benign(0.093) TCGA-77-A5GH-01 2 154800931 154800931 G C GALNT13 5'UTR 0.25 TCGA-77-A5GH-01 2 163200621 163200621 G C GCA 5'UTR 0.50 TCGA-77-A5GH-01 2 163200622 163200622 G T GCA 5'UTR 0.50 TCGA-77-A5GH-01 2 179408973 179408973 C T TTN Missense_Mutation p.E31995K 0.04 TCGA-77-A5GH-01 2 236659050 236659050 G - AGAP1 Frame_Shift_Del p.K197Nfs*6 0.31 TCGA-77-A5GH-01 2 242109222 242109222 A G PPP1R7 Silent p.A282A 0.29 TCGA-77-A5GH-01 2 242793203 242793203 A C PDCD1 3'UTR 0.19 TCGA-77-A5GH-01 2 27306307 27306307 G T EMILIN1 Missense_Mutation p.R623L 0.26 possibly_damaging(0.83) TCGA-77-A5GH-01 2 40656358 40656358 T A SLC8A1 Missense_Mutation p.S355C 0.18 deleterious(0.05) possibly_damaging(0.827) TCGA-77-A5GH-01 2 60687392 60687392 C T BCL11A 3'UTR 0.13 TCGA-77-A5GH-01 2 70910789 70910789 C A ADD2 Silent p.G353G 0.16 TCGA-77-A5GH-01 2 71892332 71892332 C T DYSF Nonsense_Mutation p.Q1739* 0.04 TCGA-77-A5GH-01 2 73994017 73994017 G A DUSP11 Silent p.C232C 0.15 TCGA-77-A5GH-01 2 74750310 74750310 C G DQX1 Silent p.V360V 0.23 TCGA-77-A5GH-01 2 75720494 75720494 C T EVA1A Silent p.K109K 0.27 TCGA-77-A5GH-01 2 79253259 79253259 C G REG3G Missense_Mutation p.L14V 0.19 tolerated(0.08) possibly_damaging(0.725) TCGA-77-A5GH-01 2 80646598 80646598 A G CTNNA2 Missense_Mutation p.I388V 0.23 tolerated(1) benign(0.001) TCGA-77-A5GH-01 3 101023088 101023088 G A IMPG2 Missense_Mutation p.H135Y 0.16 tolerated(0.46) benign(0.001) TCGA-77-A5GH-01 3 107096770 107096770 G A CCDC54 Missense_Mutation p.M112I 0.10 tolerated(0.37) benign(0.051) TCGA-77-A5GH-01 3 120366739 120366739 C A HGD Missense_Mutation p.G152W 0.28 deleterious(0) probably_damaging(1) TCGA-77-A5GH-01 3 130720061 130720061 C T ATP2C1 Intron 0.20 TCGA-77-A5GH-01 3 133375539 133375539 A T TOPBP1 Missense_Mutation p.W176R 0.16 deleterious(0) probably_damaging(0.997) TCGA-77-A5GH-01 3 142413371 142413371 A G PLS1 Missense_Mutation p.Y413C 0.10 deleterious(0.05) benign(0.012) TCGA-77-A5GH-01 3 160219805 160219805 T C KPNA4 3'UTR 0.23 TCGA-77-A5GH-01 3 164906183 164906183 C A SLITRK3 Silent p.L812L 0.15 TCGA-77-A5GH-01 3 179424805 179424805 A T USP13 Silent p.P187P 0.33 TCGA-77-A5GH-01 3 185906050 185906050 A G DGKG Missense_Mutation p.V679A 0.04 tolerated(0.53) benign(0.142) TCGA-77-A5GH-01 3 97852256 97852257 - C OR5H1 Frame_Shift_Ins p.T240Hfs*30 0.27 TCGA-77-A5GH-01 3 98110474 98110474 G C OR5K3 Nonstop_Mutation p.*322Sext*? 0.20 TCGA-77-A5GH-01 4 100774438 100774438 C T DAPP1 Missense_Mutation p.S141F 0.11 deleterious(0) possibly_damaging(0.73) TCGA-77-A5GH-01 4 122724161 122724161 G A EXOSC9 Missense_Mutation p.A125T 0.12 deleterious(0.01) benign(0.216) TCGA-77-A5GH-01 4 126408611 126408611 G T FAT4 Missense_Mutation p.G4310W 0.30 possibly_damaging(0.708) TCGA-77-A5GH-01 4 1643247 1643247 G A FAM53A Missense_Mutation p.P324S 0.19 tolerated(0.06) possibly_damaging(0.483) TCGA-77-A5GH-01 4 187584546 187584546 C G FAT1 Missense_Mutation p.A1163P 0.10 probably_damaging(1) TCGA-77-A5GH-01 4 46973171 46973171 A T GABRA4 Missense_Mutation p.I268N 0.12 deleterious(0) probably_damaging(1) TCGA-77-A5GH-01 4 49063941 49063941 A C CWH43 3'UTR 0.08 TCGA-77-A5GH-01 4 55133605 55133605 G T PDGFRA Missense_Mutation p.K303N 0.22 deleterious(0.01) possibly_damaging(0.731) TCGA-77-A5GH-01 4 55136840 55136840 G C PDGFRA Missense_Mutation p.D388H 0.07 deleterious(0) probably_damaging(0.982) TCGA-77-A5GH-01 4 619535 619535 C - PDE6B Frame_Shift_Del p.P41Rfs*109 0.23 TCGA-77-A5GH-01 4 6325201 6325201 C T PPP2R2C Missense_Mutation p.R391Q 0.23 tolerated(0.07) benign(0.183) TCGA-77-A5GH-01 4 661684 661684 G A PDE6B Missense_Mutation p.D798N 0.03 tolerated(0.19) benign(0.113) TCGA-77-A5GH-01 4 71020068 71020068 G T C4orf40 5'UTR 0.06 TCGA-77-A5GH-01 5 107684208 107684208 G C FBXL17 Silent p.L466L 0.07 TCGA-77-A5GH-01 5 122361556 122361556 G A PPIC Nonsense_Mutation p.Q145* 0.38 TCGA-77-A5GH-01 5 126866061 126866061 C G PRRC1 Missense_Mutation p.L244V 0.29 deleterious(0) probably_damaging(0.997) TCGA-77-A5GH-01 5 131039898 131039898 G A FNIP1 Missense_Mutation p.R326W 0.26 deleterious(0) probably_damaging(0.999) TCGA-77-A5GH-01 5 14387618 14387618 G T TRIO Silent p.A1214A 0.04 TCGA-77-A5GH-01 5 14471440 14471440 G A TRIO Missense_Mutation p.R1926H 0.06 benign(0.03) TCGA-77-A5GH-01 5 15500651 15500651 G T FBXL7 5'UTR 0.67 TCGA-77-A5GH-01 5 160047457 160047457 C G ATP10B Missense_Mutation p.K771N 0.08 deleterious(0) probably_damaging(0.991) TCGA-77-A5GH-01 5 169081446 169081446 C T DOCK2 Missense_Mutation p.S28F 0.39 deleterious(0.01) possibly_damaging(0.691) TCGA-77-A5GH-01 5 40909676 40909676 C A C7 5'UTR 0.05 TCGA-77-A5GH-01 5 44388501 44388503 TTC - FGF10 In_Frame_Del p.K94del 0.13 TCGA-77-A5GH-01 5 5463933 5463933 G A KIAA0947 Missense_Mutation p.V1496I 0.09 tolerated(1) benign(0.012) TCGA-77-A5GH-01 5 66416861 66416861 T C MAST4 Missense_Mutation p.L559P 0.07 benign(0.099) TCGA-77-A5GH-01 5 7706981 7706981 T C ADCY2 Silent p.L412L 0.06 TCGA-77-A5GH-01 5 79950369 79950369 C T DHFR 5'UTR 0.05 TCGA-77-A5GH-01 5 90079748 90079748 G C GPR98 Missense_Mutation p.K4509N 0.11 probably_damaging(0.95) TCGA-77-A5GH-01 6 105406048 105406048 C T LIN28B Missense_Mutation p.R29C 0.07 deleterious(0.04) possibly_damaging(0.586) TCGA-77-A5GH-01 6 128388696 128388696 T A PTPRK Missense_Mutation p.I709F 0.31 deleterious(0) probably_damaging(0.964) TCGA-77-A5GH-01 6 133035147 133035147 C G VNN1 Missense_Mutation p.A10P 0.18 deleterious(0.01) possibly_damaging(0.719) TCGA-77-A5GH-01 6 148869535 148869535 C T SASH1 Silent p.A1195A 0.20 TCGA-77-A5GH-01 6 158735201 158735201 G A TULP4 Silent p.G51G 0.15 TCGA-77-A5GH-01 6 161132189 161132189 C T PLG Nonsense_Mutation p.Q125* 0.10 TCGA-77-A5GH-01 6 161771084 161771084 G T PARK2 3'UTR 0.25 TCGA-77-A5GH-01 6 167365980 167365980 C T RNASET2 Missense_Mutation p.C48Y 0.20 deleterious(0) probably_damaging(1) TCGA-77-A5GH-01 6 17855845 17855845 G C KIF13A Missense_Mutation p.S106W 0.26 deleterious(0) probably_damaging(1) TCGA-77-A5GH-01 6 24436904 24436904 C G GPLD1 Missense_Mutation p.G753A 0.18 tolerated(0.21) possibly_damaging(0.735) TCGA-77-A5GH-01 6 27775992 27775992 C G HIST1H2AI Missense_Mutation p.S2C 0.09 deleterious_low_confidence(0.02) benign(0.184) TCGA-77-A5GH-01 6 38879270 38879270 C G DNAH8 Missense_Mutation p.P3039R 0.18 probably_damaging(1) TCGA-77-A5GH-01 6 5216956 5216956 C G LYRM4 Missense_Mutation p.R34S 0.10 deleterious(0) probably_damaging(0.999) TCGA-77-A5GH-01 6 53660155 53660155 A G LRRC1 Missense_Mutation p.Y34C 0.18 deleterious(0) possibly_damaging(0.798) TCGA-77-A5GH-01 6 73935044 73935044 C T KHDC1L Missense_Mutation p.E30K 0.07 tolerated(0.09) benign(0.086) TCGA-77-A5GH-01 6 7568770 7568770 G A DSP Missense_Mutation p.R456K 0.18 benign(0.001) TCGA-77-A5GH-01 6 7584487 7584487 C G DSP Missense_Mutation p.S2331C 0.09 probably_damaging(0.998) TCGA-77-A5GH-01 6 80912890 80912890 G A BCKDHB Silent p.L304L 0.24 TCGA-77-A5GH-01 6 88331176 88331176 A G ORC3 Silent p.E364E 0.18 TCGA-77-A5GH-01 6 90605153 90605153 G T GJA10 Missense_Mutation p.W322C 0.24 tolerated(0.12) benign(0.03) TCGA-77-A5GH-01 7 100001346 100001346 C G ZCWPW1 Missense_Mutation p.E461Q 0.12 tolerated(0.14) benign(0.215) TCGA-77-A5GH-01 7 111409609 111409609 G A DOCK4 Silent p.I1259I 0.08 TCGA-77-A5GH-01 7 119915564 119915564 G T KCND2 Missense_Mutation p.R293L 0.19 deleterious(0) probably_damaging(1) TCGA-77-A5GH-01 7 128452864 128452864 G C CCDC136 Missense_Mutation p.E882Q 0.17 tolerated(0.24) benign(0.008) TCGA-77-A5GH-01 7 131849955 131849955 C A PLXNA4 Nonsense_Mutation p.E1431* 0.14 TCGA-77-A5GH-01 7 143807029 143807029 C T OR2A2 Silent p.S118S 0.23 TCGA-77-A5GH-01 7 150646061 150646061 G A KCNH2 Silent p.L825L 0.07 TCGA-77-A5GH-01 7 151962196 151962196 G A KMT2C Silent p.L371L 0.03 TCGA-77-A5GH-01 7 18868820 18868820 G T HDAC9 Missense_Mutation p.A787S 0.18 deleterious(0) probably_damaging(0.999) TCGA-77-A5GH-01 7 44102422 44102422 C T PGAM2 Missense_Mutation p.D235N 0.08 tolerated(0.08) probably_damaging(0.974) TCGA-77-A5GH-01 7 63720659 63720659 G A ZNF679 Missense_Mutation p.D34N 0.24 tolerated(0.08) benign(0.072) TCGA-77-A5GH-01 7 72277781 72277781 C A TYW1B Nonsense_Mutation p.E201* 0.14 TCGA-77-A5GH-01 7 91865844 91865844 T C KRIT1 Missense_Mutation p.Y123C 0.10 tolerated(0.18) benign(0.336) TCGA-77-A5GH-01 8 100975124 100975124 T A RGS22 Missense_Mutation p.K1233M 0.11 deleterious(0) probably_damaging(0.956) TCGA-77-A5GH-01 8 101271125 101271125 T G RNF19A Missense_Mutation p.S726R 0.45 deleterious_low_confidence(0.04) probably_damaging(0.994) TCGA-77-A5GH-01 8 104064958 104064958 G A ATP6V1C1 Splice_Site p.X128_splice 0.22 TCGA-77-A5GH-01 8 113237118 113237118 T C CSMD3 Missense_Mutation p.E3669G 0.15 deleterious(0) benign(0.313) TCGA-77-A5GH-01 8 124054366 124054366 C A DERL1 5'UTR 0.40 TCGA-77-A5GH-01 8 124206333 124206333 A T FAM83A Missense_Mutation p.I240F 0.19 deleterious(0) possibly_damaging(0.868) TCGA-77-A5GH-01 8 132051843 132051843 C A ADCY8 Missense_Mutation p.G246V 0.20 deleterious(0) possibly_damaging(0.887) TCGA-77-A5GH-01 8 141572590 141572590 C T AGO2 Silent p.Q160Q 0.07 TCGA-77-A5GH-01 8 145058926 145058926 C T PARP10 Missense_Mutation p.G415D 0.06 tolerated(0.24) benign(0.337) TCGA-77-A5GH-01 8 3205681 3205681 C T CSMD1 Missense_Mutation p.E1103K 0.16 probably_damaging(0.998) TCGA-77-A5GH-01 8 41806882 41806882 C A KAT6A Splice_Site p.X533_splice 0.50 TCGA-77-A5GH-01 8 48320509 48320509 A G SPIDR Missense_Mutation p.Q288R 0.41 tolerated(0.15) benign(0.346) TCGA-77-A5GH-01 8 52320693 52320693 G A PXDNL Missense_Mutation p.S1164L 0.07 tolerated(0.3) benign(0.196) TCGA-77-A5GH-01 8 53079498 53079498 C T ST18 Missense_Mutation p.C373Y 0.53 deleterious(0) probably_damaging(1) TCGA-77-A5GH-01 8 56436017 56436017 C T XKR4 Missense_Mutation p.S395L 0.17 deleterious(0) probably_damaging(0.992) TCGA-77-A5GH-01 8 59720792 59720792 T C TOX Missense_Mutation p.N477D 0.18 deleterious(0.02) benign(0.108) TCGA-77-A5GH-01 8 61777922 61777922 C T CHD7 Silent p.N2808N 0.23 TCGA-77-A5GH-01 8 69434088 69434088 A G C8orf34 Missense_Mutation p.I274V 0.07 tolerated(0.61) benign(0.108) TCGA-77-A5GH-01 8 93026881 93026881 T C RUNX1T1 Missense_Mutation p.T143A 0.11 tolerated(0.09) benign(0.039) TCGA-77-A5GH-01 9 101810249 101810249 G T COL15A1 Missense_Mutation p.K920N 0.40 deleterious(0) probably_damaging(0.995) TCGA-77-A5GH-01 9 104432908 104432908 C G GRIN3A Missense_Mutation p.D596H 0.12 deleterious(0) probably_damaging(0.999) TCGA-77-A5GH-01 9 125860026 125860026 G A RABGAP1 Missense_Mutation p.E879K 0.33 deleterious(0.01) possibly_damaging(0.824) TCGA-77-A5GH-01 9 131271276 131271276 C T GLE1 Missense_Mutation p.T74M 0.35 tolerated(0.08) benign(0.172) TCGA-77-A5GH-01 9 132586231 132586231 A G TOR1A Missense_Mutation p.L45P 0.36 tolerated(0.2) possibly_damaging(0.671) TCGA-77-A5GH-01 9 139360734 139360734 G T SEC16A Silent p.L1370L 0.18 TCGA-77-A5GH-01 9 140139656 140139656 C G FAM166A Missense_Mutation p.Q179H 0.11 tolerated(0.06) benign(0.109) TCGA-77-A5GH-01 9 17795804 17795804 G T SH3GL2 3'UTR 0.43 TCGA-77-A5GH-01 9 19786203 19786203 C A SLC24A2 Missense_Mutation p.G221V 0.36 deleterious(0) probably_damaging(1) TCGA-77-A5GH-01 9 71687744 71687744 G A FXN 3'UTR 0.14 TCGA-77-A5GH-01 X 130218611 130218611 G T ARHGAP36 Missense_Mutation p.V254L 0.48 tolerated(0.12) probably_damaging(0.996) TCGA-77-A5GH-01 X 133119334 133119334 C A GPC3 Missense_Mutation p.G48V 0.42 deleterious(0) benign(0.237) TCGA-77-A5GH-01 X 135428771 135428771 C G GPR112 Missense_Mutation p.S969C 0.15 deleterious(0) probably_damaging(0.915) TCGA-77-A5GH-01 X 135961408 135961408 A G RBMX Intron 0.41 TCGA-77-A5GH-01 X 153186121 153186121 G A ARHGAP4 Missense_Mutation p.R214C 0.40 deleterious(0) probably_damaging(1) TCGA-77-A5GH-01 X 18646679 18646679 G A CDKL5 Silent p.P895P 0.47 TCGA-77-A5GH-01 X 37913580 37913580 A G SYTL5 Silent p.G78G 0.15 TCGA-77-A5GH-01 X 53172570 53172570 G T LINC01155 RNA 0.28 TCGA-77-A5GH-01 X 53617390 53617390 T C HUWE1 Missense_Mutation p.M1389V 0.50 benign(0.027) TCGA-77-A5GH-01 X 55103008 55103008 G T PAGE2B Nonsense_Mutation p.E31* 0.40 TCGA-77-A5GH-01 X 71359209 71359209 C T NHSL2 Missense_Mutation p.S604F 0.40 deleterious(0) probably_damaging(0.947) TCGA-77-A5GH-01 X 85769343 85769343 C T DACH2 Silent p.L197L 0.26 TCGA-77-A5GH-01 X 91133184 91133184 G T PCDH11X Missense_Mutation p.G649C 0.44 deleterious(0) probably_damaging(1) TCGA-77-A5GH-01 X 96638906 96638906 A G DIAPH2 Splice_Site p.X1004_splice 0.27 TCGA-79-5596-01 10 101090401 101090401 G C CNNM1 Missense_Mutation p.Q419H 0.48 deleterious(0.02) probably_damaging(0.998) TCGA-79-5596-01 10 102747892 102747892 G C C10orf2 5'UTR 0.40 TCGA-79-5596-01 10 125805261 125805261 G A CHST15 Silent p.I156I 0.06 TCGA-79-5596-01 10 127787013 127787013 G C ADAM12 Missense_Mutation p.T326R 0.57 deleterious(0) probably_damaging(0.998) TCGA-79-5596-01 10 13782217 13782217 C A FRMD4A Missense_Mutation p.G217W 0.30 deleterious(0) probably_damaging(1) TCGA-79-5596-01 10 14991081 14991081 T C DCLRE1C Missense_Mutation p.M39V 0.20 deleterious(0) probably_damaging(0.999) TCGA-79-5596-01 10 23319599 23319599 G T ARMC3 Missense_Mutation p.G707V 0.39 tolerated(0.19) benign(0.398) TCGA-79-5596-01 10 37451591 37451591 C A ANKRD30A Missense_Mutation p.P583T 0.14 deleterious(0.05) possibly_damaging(0.908) TCGA-79-5596-01 10 49628242 49628242 G C MAPK8 Missense_Mutation p.L165F 0.52 deleterious(0) probably_damaging(0.999) TCGA-79-5596-01 10 54529051 54529051 G C MBL2 Nonsense_Mutation p.S110* 0.38 TCGA-79-5596-01 10 5541228 5541228 G A CALML5 Silent p.S58S 0.29 TCGA-79-5596-01 10 75552455 75552455 C A ZSWIM8 Missense_Mutation p.P720T 0.32 tolerated(0.41) benign(0) TCGA-79-5596-01 10 78771725 78771725 G A KCNMA1 Missense_Mutation p.L698F 0.20 tolerated(0.67) benign(0) TCGA-79-5596-01 10 81056301 81056301 A T ZMIZ1 Missense_Mutation p.N435I 0.52 possibly_damaging(0.653) TCGA-79-5596-01 11 112072852 112072852 G T BCO2 Missense_Mutation p.G378V 0.33 deleterious(0) probably_damaging(0.997) TCGA-79-5596-01 11 1159392 1159392 A G MUC5AC Missense_Mutation p.S457G 0.30 deleterious(0.04) benign(0.215) TCGA-79-5596-01 11 116692320 116692320 G T APOA4 Missense_Mutation p.Q152K 0.26 tolerated(0.28) benign(0.049) TCGA-79-5596-01 11 123676371 123676371 C T OR6M1 Silent p.Q229Q 0.19 TCGA-79-5596-01 11 124121129 124121129 A T OR8G1 Missense_Mutation p.K236I 0.41 deleterious_low_confidence(0) probably_damaging(1) TCGA-79-5596-01 11 193775 193775 G A SCGB1C1 Missense_Mutation p.G40E 0.11 deleterious(0) probably_damaging(1) TCGA-79-5596-01 11 30953457 30953457 G A DCDC1 Missense_Mutation p.P920S 0.33 deleterious(0.01) possibly_damaging(0.803) TCGA-79-5596-01 11 55861343 55861343 C A OR8I2 Missense_Mutation p.S187Y 0.25 deleterious(0) probably_damaging(0.91) TCGA-79-5596-01 11 56310061 56310061 G T OR5M11 Missense_Mutation p.L225I 0.22 deleterious(0.04) benign(0.367) TCGA-79-5596-01 11 56468644 56468644 C T OR9G1 Missense_Mutation p.P261S 0.19 deleterious(0.02) possibly_damaging(0.687) TCGA-79-5596-01 11 5664968 5664968 T C TRIM34 3'UTR 0.06 TCGA-79-5596-01 11 57263617 57263617 C G SLC43A1 Silent p.V193V 0.44 TCGA-79-5596-01 11 61118562 61118562 G A CYB561A3 Silent p.S219S 0.23 TCGA-79-5596-01 11 63965021 63965021 A G STIP1 Missense_Mutation p.I286V 0.44 tolerated(0.44) benign(0.205) TCGA-79-5596-01 11 64675299 64675299 G A ATG2A Missense_Mutation p.R810C 0.33 deleterious(0) possibly_damaging(0.556) TCGA-79-5596-01 11 65820573 65820573 C T SF3B2 Nonsense_Mutation p.Q86* 0.30 TCGA-79-5596-01 12 11083413 11083413 C T PRH2 Missense_Mutation p.P85S 0.20 deleterious_low_confidence(0) unknown(0) TCGA-79-5596-01 12 121093936 121093936 C A CABP1 Intron 0.33 TCGA-79-5596-01 12 121838013 121838013 G T RNF34 5'UTR 0.55 TCGA-79-5596-01 12 1553804 1553804 G A ERC1 Missense_Mutation p.C1034Y 0.36 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-79-5596-01 12 20874976 20874976 G A SLCO1C1 Missense_Mutation p.M338I 0.27 tolerated(0.68) benign(0.055) TCGA-79-5596-01 12 29617454 29617454 C - OVCH1 Frame_Shift_Del p.G704Efs*9 0.22 TCGA-79-5596-01 12 49445917 49445917 C A KMT2D Nonsense_Mutation p.E517* 0.45 TCGA-79-5596-01 12 495075 495075 C T KDM5A Silent p.L77L 0.38 TCGA-79-5596-01 12 51717921 51717921 C G BIN2 5'UTR 0.33 TCGA-79-5596-01 12 56755429 56755429 T A APOF Silent p.P187P 0.25 TCGA-79-5596-01 12 59283857 59283858 GT - LRIG3 Frame_Shift_Del p.L194Pfs*19 0.22 TCGA-79-5596-01 12 70004157 70004157 G T LRRC10 Missense_Mutation p.N154K 0.35 deleterious(0) probably_damaging(0.999) TCGA-79-5596-01 12 71537954 71537954 G T TSPAN8 Silent p.R34R 0.25 TCGA-79-5596-01 12 73015454 73015454 C A TRHDE Silent p.A821A 0.40 TCGA-79-5596-01 12 7655081 7655081 A G CD163 Silent p.S42S 0.46 TCGA-79-5596-01 12 92818588 92818588 A C CLLU1 Silent p.I44I 0.52 TCGA-79-5596-01 13 113053460 113053460 G T SPACA7 Missense_Mutation p.G108C 0.24 tolerated(0.12) probably_damaging(0.911) TCGA-79-5596-01 13 21212484 21212484 C T IFT88 Missense_Mutation p.A476V 0.39 tolerated(0.27) benign(0.001) TCGA-79-5596-01 13 31835081 31835081 A G B3GALTL Splice_Site p.X154_splice 0.12 TCGA-79-5596-01 13 33258028 33258028 G T PDS5B Silent p.V357V 0.45 TCGA-79-5596-01 13 46357869 46357869 C A SIAH3 Silent p.P153P 0.29 TCGA-79-5596-01 13 61109366 61109366 G T TDRD3 Missense_Mutation p.W706L 0.22 tolerated(0.32) benign(0.109) TCGA-79-5596-01 13 79191187 79191187 T A RNF219 Nonsense_Mutation p.K237* 0.23 TCGA-79-5596-01 13 92380805 92380805 G A GPC5 Missense_Mutation p.R347H 0.44 tolerated(0.76) benign(0.002) TCGA-79-5596-01 13 98670959 98670959 G A IPO5 Splice_Site p.X964_splice 0.44 TCGA-79-5596-01 14 107034984 107034984 C G IGHV5-51 Missense_Mutation p.K32N 0.26 deleterious(0.03) benign(0.049) TCGA-79-5596-01 14 107083253 107083253 G A IGHV4-59 Silent p.D117D 0.27 TCGA-79-5596-01 14 107179222 107179222 G C IGHV2-70 Missense_Mutation p.P14R 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-79-5596-01 14 19378434 19378434 C T OR11H12 Missense_Mutation p.H281Y 0.66 deleterious(0.02) benign(0.128) TCGA-79-5596-01 14 19553839 19553839 C A POTEG Missense_Mutation p.D141E 0.18 tolerated(0.28) benign(0.028) TCGA-79-5596-01 14 20502918 20502918 A G OR4K13 5'UTR 0.16 TCGA-79-5596-01 14 21462197 21462197 G C METTL17 Missense_Mutation p.L224F 0.33 tolerated(0.18) probably_damaging(0.964) TCGA-79-5596-01 14 22266008 22266008 A G TRAV8-1 Silent p.K97K 0.39 TCGA-79-5596-01 14 38061683 38061683 C T FOXA1 Silent p.T102T 0.29 TCGA-79-5596-01 14 45432959 45432959 G T FAM179B Silent p.A445A 0.28 TCGA-79-5596-01 14 45693240 45693240 T A MIS18BP1 Missense_Mutation p.K850N 0.31 tolerated(1) benign(0.001) TCGA-79-5596-01 14 54417415 54417415 C A BMP4 Missense_Mutation p.A188S 0.36 tolerated(0.6) benign(0.002) TCGA-79-5596-01 14 73409711 73409711 C G DCAF4 Missense_Mutation p.H147Q 0.31 deleterious(0.01) benign(0.287) TCGA-79-5596-01 14 74726354 74726354 G A VSX2 Nonsense_Mutation p.W210* 0.19 TCGA-79-5596-01 14 75078213 75078213 C A LTBP2 Silent p.L145L 0.19 TCGA-79-5596-01 14 78392299 78392299 A G ADCK1 Missense_Mutation p.T401A 0.32 tolerated(0.68) benign(0.001) TCGA-79-5596-01 14 92403417 92403417 A C FBLN5 Missense_Mutation p.S85A 0.38 tolerated(0.73) benign(0.002) TCGA-79-5596-01 14 93172930 93172930 C A LGMN Silent p.V363V 0.29 TCGA-79-5596-01 15 21071250 21071250 T G POTEB2 Missense_Mutation p.I121L 0.19 tolerated(0.33) benign(0.094) TCGA-79-5596-01 15 23931458 23931458 C A NDN Missense_Mutation p.A303S 0.43 tolerated(0.18) possibly_damaging(0.515) TCGA-79-5596-01 15 25465674 25465674 G T SNORD115-27 RNA 0.22 TCGA-79-5596-01 15 38234446 38234447 GA - TMCO5A Frame_Shift_Del p.E189Sfs*19 0.29 TCGA-79-5596-01 15 48624537 48624537 G C DUT Missense_Mutation p.R118P 0.40 deleterious(0) benign(0.223) TCGA-79-5596-01 15 74472351 74472351 G T STRA6 3'UTR 0.29 TCGA-79-5596-01 15 89738643 89738643 G T ABHD2 Missense_Mutation p.D423Y 0.52 deleterious_low_confidence(0.03) benign(0.065) TCGA-79-5596-01 16 20681198 20681198 G C ACSM1 Missense_Mutation p.T288R 0.32 deleterious(0) probably_damaging(0.938) TCGA-79-5596-01 16 24231360 24231360 T A PRKCB 3'UTR 0.30 TCGA-79-5596-01 16 24580217 24580217 A G RBBP6 Missense_Mutation p.R736G 0.34 deleterious_low_confidence(0) unknown(0) TCGA-79-5596-01 16 24801523 24801523 T A TNRC6A Silent p.T520T 0.31 TCGA-79-5596-01 16 28331741 28331741 C T SBK1 Silent p.G258G 0.18 TCGA-79-5596-01 16 28989346 28989346 C T SPNS1 Missense_Mutation p.S142L 0.35 deleterious(0) probably_damaging(0.993) TCGA-79-5596-01 16 3139306 3139306 G C ZSCAN10 Missense_Mutation p.A655G 0.37 tolerated(0.43) benign(0.113) TCGA-79-5596-01 16 67650745 67650745 A G CTCF Silent p.P350P 0.59 TCGA-79-5596-01 16 69148509 69148509 C A HAS3 Silent p.T334T 0.45 TCGA-79-5596-01 16 81045706 81045706 T C CENPN Silent p.H54H 0.50 TCGA-79-5596-01 17 10222140 10222140 C A MYH13 Missense_Mutation p.M1235I 0.41 deleterious(0.01) benign(0.011) TCGA-79-5596-01 17 10411801 10411801 G A MYH1 Silent p.N592N 0.28 TCGA-79-5596-01 17 1385796 1385796 G A MYO1C Silent p.Y201Y 0.46 TCGA-79-5596-01 17 38499029 38499029 C T RARA Intron 0.36 TCGA-79-5596-01 17 38976859 38976859 C A KRT10 Missense_Mutation p.R257S 0.27 deleterious(0) probably_damaging(0.997) TCGA-79-5596-01 17 55038248 55038248 T A COIL Missense_Mutation p.I45F 0.13 deleterious(0) probably_damaging(0.962) TCGA-79-5596-01 17 73094155 73094155 G T SLC16A5 Silent p.V74V 0.32 TCGA-79-5596-01 17 7405362 7405362 C T POLR2A Silent p.L831L 0.35 TCGA-79-5596-01 17 7577085 7577085 C A TP53 Nonsense_Mutation p.E285* 0.73 TCGA-79-5596-01 17 9792791 9792791 T G GLP2R Missense_Mutation p.C477W 0.30 tolerated(0.09) possibly_damaging(0.687) TCGA-79-5596-01 17 9792793 9792793 C T GLP2R Missense_Mutation p.P478L 0.32 tolerated(0.08) benign(0.033) TCGA-79-5596-01 18 30093146 30093146 T G WBP11P1 RNA 0.41 TCGA-79-5596-01 18 33780096 33780096 G T MOCOS Silent p.L250L 0.30 TCGA-79-5596-01 18 48703267 48703267 G C MEX3C Missense_Mutation p.F478L 0.41 deleterious(0.05) benign(0.177) TCGA-79-5596-01 18 5398050 5398050 C G EPB41L3 Silent p.G814G 0.33 TCGA-79-5596-01 18 72346653 72346653 G T ZNF407 Silent p.L1226L 0.38 TCGA-79-5596-01 18 74091675 74091675 C A ZNF516 Missense_Mutation p.G799C 0.31 deleterious(0) probably_damaging(1) TCGA-79-5596-01 19 1257036 1257036 A G MIDN Missense_Mutation p.K391R 0.50 deleterious(0.01) benign(0.292) TCGA-79-5596-01 19 18376575 18376576 - C KIAA1683 Frame_Shift_Ins p.V592Gfs*7 0.32 TCGA-79-5596-01 19 19905455 19905456 - TA ZNF506 Frame_Shift_Ins p.K414Ifs*14 0.11 TCGA-79-5596-01 19 21132210 21132210 G T ZNF85 Missense_Mutation p.R297L 0.25 tolerated(0.62) benign(0.005) TCGA-79-5596-01 19 23329058 23329058 C A ZNF730 Silent p.A404A 0.33 TCGA-79-5596-01 19 2790526 2790526 G T THOP1 Nonsense_Mutation p.E42* 0.10 TCGA-79-5596-01 19 37118433 37118433 A C ZNF382 Missense_Mutation p.E545A 0.14 deleterious(0.03) benign(0.176) TCGA-79-5596-01 19 39216480 39216480 G T ACTN4 Missense_Mutation p.Q709H 0.35 tolerated(0.17) benign(0.002) TCGA-79-5596-01 19 43093702 43093728 TGAGTAGAGTGAGGGTCCTGTTGCCAT - CEACAM8 In_Frame_Del p.N195_L203del 0.23 TCGA-79-5596-01 19 43575926 43575926 C A PSG2 Missense_Mutation p.G297V 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-79-5596-01 19 52497313 52497313 G A ZNF615 Missense_Mutation p.T350I 0.29 deleterious(0) probably_damaging(0.995) TCGA-79-5596-01 19 52857002 52857002 G T ZNF610 Missense_Mutation p.G44V 0.39 tolerated(0.08) benign(0.012) TCGA-79-5596-01 19 53612187 53612187 G A ZNF415 Missense_Mutation p.L371F 0.36 deleterious(0.03) probably_damaging(0.997) TCGA-79-5596-01 19 54242625 54242625 T A MIR518A2 RNA 0.25 TCGA-79-5596-01 19 58640099 58640099 G C ZNF329 Missense_Mutation p.P258A 0.36 deleterious(0) probably_damaging(0.996) TCGA-79-5596-01 19 899455 899455 C T R3HDM4 Missense_Mutation p.D230N 0.08 tolerated(0.14) probably_damaging(0.994) TCGA-79-5596-01 19 9065308 9065308 G T MUC16 Silent p.R7380R 0.23 TCGA-79-5596-01 19 9406772 9406772 T C ZNF699 Silent p.T436T 0.28 TCGA-79-5596-01 1 110738236 110738236 G - SLC6A17 Frame_Shift_Del p.L509Cfs*48 0.33 TCGA-79-5596-01 1 148932855 148932855 A G RP11-14N7.2 RNA 0.06 TCGA-79-5596-01 1 152681676 152681676 G T LCE4A Missense_Mutation p.G42V 0.42 tolerated_low_confidence(0.06) unknown(0) TCGA-79-5596-01 1 160811287 160811287 G C CD244 Missense_Mutation p.S128C 0.36 deleterious(0.01) probably_damaging(0.996) TCGA-79-5596-01 1 160850483 160850483 A G ITLN1 Missense_Mutation p.Y194H 0.36 deleterious(0.01) probably_damaging(0.985) TCGA-79-5596-01 1 161641229 161641229 G C FCGR2B Missense_Mutation p.V61L 0.32 deleterious(0) probably_damaging(0.986) TCGA-79-5596-01 1 161993247 161993247 C T OLFML2B 5'UTR 0.53 TCGA-79-5596-01 1 165218659 165218659 G A LMX1A Missense_Mutation p.A161V 0.37 tolerated(0.27) benign(0.131) TCGA-79-5596-01 1 167096416 167096416 G A DUSP27 Missense_Mutation p.S683N 0.36 deleterious(0) possibly_damaging(0.701) TCGA-79-5596-01 1 176837956 176837956 G T ASTN1 Intron 0.24 TCGA-79-5596-01 1 197019929 197019929 C A F13B Missense_Mutation p.G546C 0.29 deleterious(0) probably_damaging(1) TCGA-79-5596-01 1 197070129 197070129 C A ASPM Missense_Mutation p.G2751V 0.30 deleterious(0.01) probably_damaging(0.993) TCGA-79-5596-01 1 200978009 200978009 A T KIF21B Missense_Mutation p.I112N 0.36 deleterious(0) probably_damaging(0.994) TCGA-79-5596-01 1 210329074 210329074 C G SYT14 Missense_Mutation p.D436E 0.06 tolerated(0.53) benign(0.02) TCGA-79-5596-01 1 236143196 236143196 C T NID1 Silent p.K1145K 0.33 TCGA-79-5596-01 1 237753953 237753953 A G RYR2 Missense_Mutation p.D1274G 0.33 benign(0) TCGA-79-5596-01 1 237872255 237872255 G A RYR2 Silent p.V3333V 0.41 TCGA-79-5596-01 1 237972313 237972313 T C RYR2 Missense_Mutation p.M4804T 0.36 possibly_damaging(0.537) TCGA-79-5596-01 1 241669390 241669390 C G FH Missense_Mutation p.A273P 0.29 deleterious(0) probably_damaging(1) TCGA-79-5596-01 1 247875953 247875953 G A OR6F1 Silent p.Y35Y 0.22 TCGA-79-5596-01 1 50666624 50666624 C A ELAVL4 Missense_Mutation p.P309H 0.56 deleterious(0) probably_damaging(0.975) TCGA-79-5596-01 1 84880268 84880268 G A DNASE2B Nonsense_Mutation p.W268* 0.59 TCGA-79-5596-01 20 13398166 13398166 C T TASP1 Missense_Mutation p.E367K 0.39 deleterious(0.01) benign(0.053) TCGA-79-5596-01 20 13765839 13765839 G A NDUFAF5 Missense_Mutation p.R42K 0.31 tolerated(0.95) benign(0.001) TCGA-79-5596-01 20 50400813 50400813 C A SALL4 Silent p.A1051A 0.46 TCGA-79-5596-01 20 55027141 55027141 A G CASS4 Silent p.K303K 0.11 TCGA-79-5596-01 20 58569529 58569529 T G CDH26 Missense_Mutation p.L551V 0.14 deleterious(0.01) possibly_damaging(0.864) TCGA-79-5596-01 21 10941907 10941907 C T TPTE Splice_Site p.X265_splice 0.22 TCGA-79-5596-01 21 22782597 22782597 C A NCAM2 Missense_Mutation p.A400D 0.33 deleterious(0.02) possibly_damaging(0.614) TCGA-79-5596-01 21 35138318 35138318 T A ITSN1 Splice_Site p.X309_splice 0.78 TCGA-79-5596-01 22 20077777 20077777 C A DGCR8 Silent p.S434S 0.30 TCGA-79-5596-01 2 119600502 119600502 G T EN1 3'UTR 0.46 TCGA-79-5596-01 2 131521608 131521608 C T AMER3 Nonsense_Mutation p.R655* 0.50 TCGA-79-5596-01 2 152531069 152531069 T A NEB Missense_Mutation p.L1303F 0.25 probably_damaging(0.982) TCGA-79-5596-01 2 160087559 160087559 G A TANC1 3'UTR 0.37 TCGA-79-5596-01 2 162879275 162879275 C A DPP4 Missense_Mutation p.W353L 0.20 deleterious(0.02) possibly_damaging(0.562) TCGA-79-5596-01 2 166152406 166152406 A G SCN2A Missense_Mutation p.I25V 0.29 deleterious(0) benign(0.186) TCGA-79-5596-01 2 179401738 179401738 A T TTN Silent p.V33366V 0.29 TCGA-79-5596-01 2 179432773 179432773 C A TTN Missense_Mutation p.R26029I 0.20 TCGA-79-5596-01 2 204735496 204735496 T C CTLA4 Silent p.D99D 0.53 TCGA-79-5596-01 2 219520921 219520921 C - ZNF142 Frame_Shift_Del p.E78Rfs*3 0.29 TCGA-79-5596-01 2 228401345 228401345 G T AGFG1 Missense_Mutation p.V428F 0.62 tolerated(0.09) benign(0.347) TCGA-79-5596-01 2 233243727 233243727 C A ALPP Silent p.A41A 0.49 TCGA-79-5596-01 2 238253013 238253013 G A COL6A3 Nonsense_Mutation p.Q2550* 0.49 TCGA-79-5596-01 2 26739421 26739421 A G OTOF Missense_Mutation p.V125A 0.31 tolerated(0.52) benign(0.031) TCGA-79-5596-01 2 49210295 49210295 T A FSHR Nonsense_Mutation p.K179* 0.24 TCGA-79-5596-01 2 61021203 61021203 C T PAPOLG Silent p.H622H 0.34 TCGA-79-5596-01 2 70910835 70910835 C A ADD2 Missense_Mutation p.R338L 0.22 deleterious(0) probably_damaging(0.922) TCGA-79-5596-01 2 74274557 74274557 C G TET3 Missense_Mutation p.P370A 0.52 tolerated(0.16) benign(0.16) TCGA-79-5596-01 2 80801331 80801331 C A CTNNA2 Silent p.A595A 0.31 TCGA-79-5596-01 3 130452450 130452450 C G PIK3R4 Silent p.L464L 0.30 TCGA-79-5596-01 3 167033538 167033538 C T ZBBX Missense_Mutation p.S425N 0.14 tolerated(0.07) possibly_damaging(0.888) TCGA-79-5596-01 3 171431783 171431786 CACC T PLD1 In_Frame_Del p.G270_A271delinsT 0.09 TCGA-79-5596-01 3 173322492 173322492 G T NLGN1 Missense_Mutation p.G35V 0.12 tolerated_low_confidence(0.52) benign(0.165) TCGA-79-5596-01 3 186443036 186443036 G A KNG1 Missense_Mutation p.R184Q 0.76 tolerated(0.14) benign(0.309) TCGA-79-5596-01 3 192635645 192635645 T C MB21D2 5'UTR 0.24 TCGA-79-5596-01 3 19575585 19575585 T G KCNH8 Missense_Mutation p.N1106K 0.53 deleterious_low_confidence(0.01) benign(0.03) TCGA-79-5596-01 3 3888015 3888015 G T LRRN1 Missense_Mutation p.D564Y 0.04 deleterious(0) possibly_damaging(0.669) TCGA-79-5596-01 3 46874446 46874446 T C PRSS42 Missense_Mutation p.T208A 0.49 tolerated(0.72) possibly_damaging(0.739) TCGA-79-5596-01 3 51664761 51664761 C T RAD54L2 Silent p.H213H 0.55 TCGA-79-5596-01 3 52512504 52512504 G T NISCH Nonsense_Mutation p.E405* 0.59 TCGA-79-5596-01 3 79174655 79174655 C T ROBO1 Silent p.G41G 0.53 TCGA-79-5596-01 3 79174656 79174656 C T ROBO1 Missense_Mutation p.G41E 0.53 tolerated_low_confidence(0.09) possibly_damaging(0.766) TCGA-79-5596-01 3 79174657 79174657 C T ROBO1 Missense_Mutation p.G41R 0.50 tolerated_low_confidence(0.07) possibly_damaging(0.84) TCGA-79-5596-01 4 113569072 113569072 G A LARP7 Intron 0.26 TCGA-79-5596-01 4 115767148 115767148 A T NDST4 Missense_Mutation p.M649K 0.29 deleterious(0) probably_damaging(0.948) TCGA-79-5596-01 4 121957267 121957267 A G NDNF 3'UTR 0.64 TCGA-79-5596-01 4 187004378 187004378 T A TLR3 Missense_Mutation p.L513Q 0.36 deleterious(0) probably_damaging(1) TCGA-79-5596-01 4 40823940 40823940 C T APBB2 Nonsense_Mutation p.W687* 0.52 TCGA-79-5596-01 4 502702 502702 A T PIGG Missense_Mutation p.T282S 0.54 tolerated(0.76) benign(0.063) TCGA-79-5596-01 4 57352550 57352550 G A SRP72 Silent p.L382L 0.86 TCGA-79-5596-01 4 77082904 77082904 C A SCARB2 Nonsense_Mutation p.G467* 0.37 TCGA-79-5596-01 5 121188415 121188415 G A FTMT 3'UTR 0.50 TCGA-79-5596-01 5 140249318 140249318 G T PCDHA11 Missense_Mutation p.L210F 0.50 deleterious_low_confidence(0) possibly_damaging(0.887) TCGA-79-5596-01 5 23509589 23509589 C A PRDM9 Missense_Mutation p.A27D 0.26 deleterious_low_confidence(0) benign(0.141) TCGA-79-5596-01 5 23509590 23509590 C A PRDM9 Silent p.A27A 0.26 TCGA-79-5596-01 5 33751419 33751419 G T ADAMTS12 Intron 0.38 TCGA-79-5596-01 5 35861037 35861037 A C IL7R Missense_Mutation p.T56P 0.25 deleterious(0) probably_damaging(0.917) TCGA-79-5596-01 5 38885587 38885587 G A OSMR Splice_Site p.X280_splice 0.28 TCGA-79-5596-01 6 110300851 110300851 G T GPR6 Missense_Mutation p.R179L 0.20 deleterious(0.01) benign(0.192) TCGA-79-5596-01 6 127797368 127797368 C A SOGA3 Silent p.L601L 0.29 TCGA-79-5596-01 6 132198151 132198151 G T ENPP1 Silent p.P581P 0.36 TCGA-79-5596-01 6 132198152 132198152 G T ENPP1 Missense_Mutation p.A582S 0.35 tolerated(0.08) benign(0.088) TCGA-79-5596-01 6 132874615 132874615 A C TAAR8 Missense_Mutation p.T262P 0.22 deleterious(0.04) benign(0.078) TCGA-79-5596-01 6 152470633 152470633 A G SYNE1 Silent p.H8207H 0.56 TCGA-79-5596-01 6 155465747 155465747 G A TIAM2 Silent p.T546T 0.36 TCGA-79-5596-01 6 158567853 158567853 C A SERAC1 Nonsense_Mutation p.E150* 0.29 TCGA-79-5596-01 6 17706554 17706554 T A NUP153 Missense_Mutation p.H22L 0.39 deleterious(0) possibly_damaging(0.883) TCGA-79-5596-01 6 18215255 18215255 G T KDM1B Silent p.L477L 0.26 TCGA-79-5596-01 6 25811664 25811664 C T SLC17A1 Silent p.L380L 0.21 TCGA-79-5596-01 6 26027481 26027481 G T HIST1H3B 3'Flank 0.36 TCGA-79-5596-01 6 27839850 27839850 C G HIST1H3I Missense_Mutation p.D82H 0.27 deleterious_low_confidence(0.01) benign(0.006) TCGA-79-5596-01 6 3019901 3019901 G T NQO2 3'UTR 0.29 TCGA-79-5596-01 6 44394264 44394264 A G CDC5L Missense_Mutation p.T566A 0.30 deleterious(0.03) benign(0.013) TCGA-79-5596-01 6 55300562 55300562 C A HMGCLL1 Splice_Site p.X338_splice 0.34 TCGA-79-5596-01 6 69349019 69349019 C A BAI3 Missense_Mutation p.S151Y 0.36 deleterious(0.03) probably_damaging(0.974) TCGA-79-5596-01 6 79911381 79911381 T G HMGN3 3'UTR 0.45 TCGA-79-5596-01 7 100383649 100383649 A T ZAN Missense_Mutation p.T2288S 0.32 unknown(0) TCGA-79-5596-01 7 100682499 100682499 C G MUC17 Missense_Mutation p.T2601S 0.26 benign(0.062) TCGA-79-5596-01 7 100682517 100682517 C T MUC17 Missense_Mutation p.T2607I 0.26 benign(0.031) TCGA-79-5596-01 7 111430582 111430582 C A DOCK4 Silent p.R1082R 0.23 TCGA-79-5596-01 7 126173835 126173835 C A GRM8 Missense_Mutation p.C534F 0.43 deleterious(0) probably_damaging(0.999) TCGA-79-5596-01 7 16832498 16832498 C A AGR2 3'UTR 0.35 TCGA-79-5596-01 7 22533014 22533014 C A STEAP1B Missense_Mutation p.A176S 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-79-5596-01 7 23023562 23023562 C T FAM126A Splice_Site p.X51_splice 0.21 TCGA-79-5596-01 7 27169118 27169118 A T HOXA4 Missense_Mutation p.L230Q 0.24 deleterious(0) probably_damaging(1) TCGA-79-5596-01 7 31864533 31864533 G A PDE1C Missense_Mutation p.P512S 0.21 deleterious(0) probably_damaging(1) TCGA-79-5596-01 7 32620437 32620437 G T AVL9 Missense_Mutation p.G589V 0.38 deleterious(0) benign(0.079) TCGA-79-5596-01 7 4838965 4838965 G C RADIL 3'UTR 0.46 TCGA-79-5596-01 7 76240828 76240828 C G POMZP3 Missense_Mutation p.R173T 0.22 tolerated_low_confidence(0.07) benign(0.248) TCGA-79-5596-01 7 87173568 87173568 G C ABCB1 Silent p.S696S 0.32 TCGA-79-5596-01 8 101718925 101718925 T C PABPC1 Missense_Mutation p.N519S 0.52 tolerated(0.23) benign(0.001) TCGA-79-5596-01 8 113303784 113303784 A C CSMD3 Missense_Mutation p.C2977G 0.37 deleterious(0) probably_damaging(0.983) TCGA-79-5596-01 8 113702216 113702216 C A CSMD3 Missense_Mutation p.G679V 0.21 deleterious(0.03) probably_damaging(0.987) TCGA-79-5596-01 8 114186147 114186147 T C CSMD3 Splice_Site p.X172_splice 0.06 TCGA-79-5596-01 8 125083747 125083747 G A FER1L6 Missense_Mutation p.G1323S 0.55 deleterious(0) probably_damaging(0.996) TCGA-79-5596-01 8 125498573 125498573 C A RNF139 Missense_Mutation p.T228K 0.16 tolerated(0.18) benign(0.388) TCGA-79-5596-01 8 144413461 144413461 C A TOP1MT Missense_Mutation p.E57D 0.30 deleterious(0) possibly_damaging(0.587) TCGA-79-5596-01 8 145027964 145027964 T G PLEC 5'Flank 0.54 TCGA-79-5596-01 8 54656162 54656162 C A ATP6V1H Missense_Mutation p.V456L 0.21 tolerated(0.12) probably_damaging(0.999) TCGA-79-5596-01 8 69380939 69380939 T A C8orf34 Missense_Mutation p.V207E 0.33 deleterious(0) possibly_damaging(0.875) TCGA-79-5596-01 8 77618322 77618322 C G ZFHX4 Missense_Mutation p.H667D 0.30 benign(0.402) TCGA-79-5596-01 8 87590934 87590934 G C CNGB3 Missense_Mutation p.R696G 0.35 deleterious(0.04) possibly_damaging(0.759) TCGA-79-5596-01 9 138011770 138011770 G A OLFM1 Missense_Mutation p.A384T 0.33 deleterious(0.01) probably_damaging(0.948) TCGA-79-5596-01 9 139748691 139748691 C T MAMDC4 Silent p.H233H 0.33 TCGA-79-5596-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.42 TCGA-79-5596-01 9 32633128 32633128 C T TAF1L Missense_Mutation p.R817K 0.47 tolerated(0.15) benign(0.016) TCGA-79-5596-01 9 6330190 6330190 A G TPD52L3 3'UTR 0.41 TCGA-79-5596-01 9 82334980 82334980 G A TLE4 Missense_Mutation p.R537H 0.13 deleterious(0.01) benign(0.307) TCGA-79-5596-01 9 90536012 90536012 T A SPATA31C1 RNA 0.36 TCGA-79-5596-01 X 109764681 109764681 C T TDGF1P3 RNA 0.68 TCGA-79-5596-01 X 112058670 112058670 C T AMOT Silent p.Q436Q 0.72 TCGA-79-5596-01 X 117764435 117764435 G A DOCK11 Missense_Mutation p.V1290I 0.77 tolerated(0.47) benign(0.004) TCGA-79-5596-01 X 152014901 152014901 C A NSDHL Missense_Mutation p.D11E 0.56 tolerated_low_confidence(0.13) benign(0.002) TCGA-79-5596-01 X 35820440 35820440 C T MAGEB16 Missense_Mutation p.H43Y 0.74 tolerated(0.97) benign(0.018) TCGA-85-6175-01 10 75276561 75276561 A G USP54 Missense_Mutation p.L1208P 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.453) TCGA-85-6175-01 11 55653687 55653687 G T TRIM51 Missense_Mutation p.C167F 0.07 tolerated(0.59) benign(0.056) TCGA-85-6175-01 11 77047173 77047173 C T PAK1 Missense_Mutation p.M457I 0.08 deleterious(0) probably_damaging(0.993) TCGA-85-6175-01 12 22812066 22812066 G A ETNK1 Missense_Mutation p.A268T 0.13 tolerated(0.43) benign(0.038) TCGA-85-6175-01 12 22812075 22812075 G C ETNK1 Missense_Mutation p.D271H 0.14 tolerated(0.09) possibly_damaging(0.743) TCGA-85-6175-01 12 2939920 2939920 C T NRIP2 Missense_Mutation p.R150K 0.21 tolerated(0.57) benign(0.01) TCGA-85-6175-01 13 84455475 84455475 C T SLITRK1 Silent p.P56P 0.13 TCGA-85-6175-01 14 23890182 23890182 C G MYH7 Missense_Mutation p.K1107N 0.15 deleterious(0) probably_damaging(0.999) TCGA-85-6175-01 14 93677049 93677049 C T RP11-371E8.4 Missense_Mutation p.L133F 0.14 tolerated(0.72) benign(0.006) TCGA-85-6175-01 16 30387745 30387745 C A MYLPF Silent p.G58G 0.07 TCGA-85-6175-01 16 31106804 31106804 C G VKORC1 5'Flank 0.18 TCGA-85-6175-01 16 66918200 66918200 G T PDP2 Missense_Mutation p.V5L 0.06 tolerated_low_confidence(0.06) benign(0.005) TCGA-85-6175-01 16 75146331 75146331 C T LDHD Missense_Mutation p.V483M 0.10 tolerated(0.1) possibly_damaging(0.764) TCGA-85-6175-01 17 18210214 18210214 T A TOP3A Silent p.V127V 0.12 TCGA-85-6175-01 17 26964040 26964040 T C KIAA0100 Silent p.P640P 0.08 TCGA-85-6175-01 17 29665757 29665757 C A NF1 Nonsense_Mutation p.Y2285* 0.14 TCGA-85-6175-01 17 41368482 41368482 C T TMEM106A Silent p.I148I 0.12 TCGA-85-6175-01 17 73497987 73497987 G T CASKIN2 Missense_Mutation p.S1056R 0.23 tolerated(0.45) benign(0.012) TCGA-85-6175-01 19 1231080 1231080 C T C19orf26 Missense_Mutation p.G392S 0.24 tolerated_low_confidence(0.58) benign(0.007) TCGA-85-6175-01 19 19625717 19625717 A C TSSK6 Missense_Mutation p.S174A 0.19 deleterious(0) possibly_damaging(0.527) TCGA-85-6175-01 19 50549917 50549917 C T ZNF473 Silent p.F739F 0.19 TCGA-85-6175-01 1 37271849 37271849 C A GRIK3 Nonsense_Mutation p.E724* 0.15 TCGA-85-6175-01 1 42049199 42049199 G A HIVEP3 Nonsense_Mutation p.R424* 0.08 TCGA-85-6175-01 1 47614361 47614361 C T CYP4A22 Silent p.P484P 0.10 TCGA-85-6175-01 1 48705040 48705040 G A SLC5A9 Missense_Mutation p.R528H 0.20 deleterious(0.01) benign(0.082) TCGA-85-6175-01 1 57372362 57372362 G A C8A Silent p.T373T 0.18 TCGA-85-6175-01 1 75037915 75037915 G A C1orf173 Missense_Mutation p.T1160M 0.06 deleterious(0.03) possibly_damaging(0.674) TCGA-85-6175-01 20 30310034 30310034 G A BCL2L1 5'UTR 0.23 TCGA-85-6175-01 20 37400216 37400216 G A ACTR5 Silent p.S527S 0.23 TCGA-85-6175-01 22 19799876 19799876 G A GNB1L Missense_Mutation p.R117W 0.19 deleterious(0) possibly_damaging(0.676) TCGA-85-6175-01 22 23437925 23437925 C T GNAZ Missense_Mutation p.R15W 0.15 deleterious(0) probably_damaging(0.947) TCGA-85-6175-01 22 29696210 29696210 G T EWSR1 3'UTR 0.13 TCGA-85-6175-01 2 130951985 130951985 C T TUBA3E Missense_Mutation p.G144S 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-85-6175-01 2 238274445 238274445 C T COL6A3 Missense_Mutation p.E1912K 0.09 benign(0.233) TCGA-85-6175-01 2 242511723 242511723 C T BOK Silent p.L175L 0.17 TCGA-85-6175-01 2 24928059 24928059 C T NCOA1 Missense_Mutation p.P352S 0.04 tolerated(0.19) probably_damaging(0.985) TCGA-85-6175-01 2 40656545 40656545 G A SLC8A1 Silent p.D292D 0.15 TCGA-85-6175-01 3 101390091 101390091 C T ZBTB11 Missense_Mutation p.E221K 0.12 deleterious(0) probably_damaging(1) TCGA-85-6175-01 3 129816044 129816044 A - AC083906.2 3'Flank 0.18 TCGA-85-6175-01 5 176305332 176305332 C T UNC5A Missense_Mutation p.R653C 0.16 deleterious(0) probably_damaging(0.986) TCGA-85-6175-01 5 23526956 23526956 C A PRDM9 Silent p.R587R 0.05 TCGA-85-6175-01 6 155577880 155577880 G T TIAM2 Missense_Mutation p.Q1577H 0.24 tolerated(0.12) benign(0.005) TCGA-85-6175-01 7 138601663 138601663 G A KIAA1549 Silent p.D903D 0.16 TCGA-85-6175-01 7 43679177 43679177 G A COA1 3'UTR 0.06 TCGA-85-6175-01 7 65441070 65441081 CCTTAAGTTGGC - GUSB In_Frame_Del p.G278_K281del 0.14 TCGA-85-6175-01 8 122641065 122641065 C T HAS2 Silent p.T172T 0.10 TCGA-85-6175-01 8 143999120 143999120 C T CYP11B2 Missense_Mutation p.G46D 0.10 tolerated(0.35) benign(0.33) TCGA-85-6175-01 8 54682288 54682288 G C ATP6V1H Nonsense_Mutation p.Y355* 0.19 TCGA-85-6175-01 9 128001281 128001281 A G HSPA5 Missense_Mutation p.F312S 0.27 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-85-6175-01 9 138439807 138439807 G A OBP2A Missense_Mutation p.R123H 0.18 tolerated(0.21) benign(0.001) TCGA-85-6175-01 9 16419078 16419078 C A BNC2 Missense_Mutation p.C1070F 0.69 deleterious(0) probably_damaging(0.994) TCGA-85-6175-01 9 5988344 5988344 C G KIAA2026 Splice_Site p.X265_splice 0.05 TCGA-85-6175-01 9 93639979 93639979 C T SYK Silent p.I436I 0.16 TCGA-85-6175-01 X 118753947 118753947 G A SEPT6 Intron 0.09 TCGA-85-6175-01 X 138687052 138687052 G A MCF2 Missense_Mutation p.A626V 0.08 deleterious(0.01) benign(0.41) TCGA-85-6175-01 X 154189424 154189424 G T F8 Missense_Mutation p.A488E 0.14 deleterious(0) probably_damaging(1) TCGA-85-6560-01 10 118314758 118314758 A T PNLIP Nonsense_Mutation p.K214* 0.56 TCGA-85-6560-01 10 15885221 15885221 C A FAM188A Silent p.R75R 0.27 TCGA-85-6560-01 10 16635327 16635327 G C RSU1 3'UTR 0.35 TCGA-85-6560-01 10 18270262 18270262 C G SLC39A12 Missense_Mutation p.L316V 0.26 deleterious(0) possibly_damaging(0.786) TCGA-85-6560-01 10 34573094 34573094 C T PARD3 Missense_Mutation p.E1052K 0.09 deleterious(0.02) benign(0.297) TCGA-85-6560-01 10 38654459 38654459 A C HSD17B7P2 RNA 0.35 TCGA-85-6560-01 10 43869928 43869928 C A FXYD4 Silent p.A16A 0.31 TCGA-85-6560-01 10 50827942 50827942 C A CHAT Missense_Mutation p.Q187K 0.32 tolerated(0.87) benign(0.044) TCGA-85-6560-01 10 52610520 52610520 G A A1CF Missense_Mutation p.P10S 0.23 tolerated_low_confidence(0.3) unknown(0) TCGA-85-6560-01 10 8055795 8055795 C G TAF3 Nonsense_Mutation p.Y890* 0.12 TCGA-85-6560-01 10 90986679 90986679 C T LIPA Missense_Mutation p.V171M 0.39 deleterious(0) probably_damaging(0.931) TCGA-85-6560-01 10 93768864 93768864 G A BTAF1 Silent p.P1334P 0.24 TCGA-85-6560-01 11 104778260 104778260 C A RP11-693N9.2 RNA 0.26 TCGA-85-6560-01 11 104778261 104778261 C T RP11-693N9.2 RNA 0.29 TCGA-85-6560-01 11 107300080 107300080 G C CWF19L2 Nonsense_Mutation p.S293* 0.23 TCGA-85-6560-01 11 1080602 1080602 A G MUC2 Missense_Mutation p.Y415C 0.19 probably_damaging(1) TCGA-85-6560-01 11 117375666 117375666 G T DSCAML1 Missense_Mutation p.P779T 0.33 deleterious(0) probably_damaging(0.99) TCGA-85-6560-01 11 119207178 119207178 C T RNF26 3'UTR 0.24 TCGA-85-6560-01 11 123848389 123848389 G A OR10S1 Missense_Mutation p.R4C 0.31 deleterious_low_confidence(0.01) benign(0) TCGA-85-6560-01 11 124413240 124413240 C A OR8B12 Missense_Mutation p.C104F 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.563) TCGA-85-6560-01 11 124765505 124765505 G A ROBO4 Missense_Mutation p.A295V 0.15 deleterious(0.04) benign(0.056) TCGA-85-6560-01 11 1263832 1263832 A G MUC5B Missense_Mutation p.T1908A 0.40 unknown(0) TCGA-85-6560-01 11 134055385 134055385 C A NCAPD3 Missense_Mutation p.K694N 0.30 deleterious(0) possibly_damaging(0.617) TCGA-85-6560-01 11 1651380 1651380 G T KRTAP5-5 Missense_Mutation p.V104L 0.43 unknown(0) TCGA-85-6560-01 11 1780299 1780299 T C CTSD Missense_Mutation p.N124S 0.43 deleterious(0.02) possibly_damaging(0.672) TCGA-85-6560-01 11 18362877 18362877 A G GTF2H1 Missense_Mutation p.Q226R 0.15 deleterious(0) probably_damaging(0.987) TCGA-85-6560-01 11 2189775 2189775 G A TH Missense_Mutation p.L176F 0.33 tolerated(0.09) possibly_damaging(0.467) TCGA-85-6560-01 11 26663489 26663489 C A ANO3 Missense_Mutation p.H730N 0.23 tolerated(0.56) benign(0.021) TCGA-85-6560-01 11 35227757 35227757 A G CD44 Missense_Mutation p.M461V 0.34 tolerated(0.14) benign(0.003) TCGA-85-6560-01 11 44286614 44286614 C G ALX4 Silent p.G342G 0.46 TCGA-85-6560-01 11 45970972 45970972 C T PHF21A Missense_Mutation p.G402E 0.30 deleterious(0.02) probably_damaging(0.928) TCGA-85-6560-01 11 4615690 4615690 C G OR52I1 Missense_Mutation p.T141R 0.36 deleterious(0.01) benign(0.378) TCGA-85-6560-01 11 4967584 4967584 C G OR51A4 Silent p.V249V 0.25 TCGA-85-6560-01 11 49831400 49831400 T C RP11-707M1.1 RNA 0.17 TCGA-85-6560-01 11 5444139 5444139 C A OR51Q1 Missense_Mutation p.L237I 0.37 tolerated(0.1) benign(0.052) TCGA-85-6560-01 11 55563689 55563689 T G OR5D14 Missense_Mutation p.Y220D 0.18 deleterious(0) probably_damaging(0.998) TCGA-85-6560-01 11 55595037 55595037 C A OR5L2 Missense_Mutation p.L115M 0.39 deleterious(0) probably_damaging(0.999) TCGA-85-6560-01 11 55595193 55595193 C G OR5L2 Missense_Mutation p.L167V 0.30 deleterious(0.05) benign(0.03) TCGA-85-6560-01 11 56510728 56510728 T - OR9G4 Frame_Shift_Del p.N187Ifs*14 0.13 TCGA-85-6560-01 11 57799212 57799212 A T OR6Q1 Missense_Mutation p.Y263F 0.22 deleterious(0) probably_damaging(0.992) TCGA-85-6560-01 11 59945748 59945748 C A MS4A6A Missense_Mutation p.R136S 0.40 deleterious(0) benign(0.117) TCGA-85-6560-01 11 62301521 62301521 C T AHNAK Missense_Mutation p.R123H 0.61 probably_damaging(0.998) TCGA-85-6560-01 11 6977277 6977277 T A ZNF215 Missense_Mutation p.Y357N 0.23 tolerated(0.26) benign(0.027) TCGA-85-6560-01 11 73829418 73829418 T C C2CD3 Missense_Mutation p.T459A 0.33 tolerated(0.12) benign(0.037) TCGA-85-6560-01 11 74054399 74054399 T C PGM2L1 Silent p.K427K 0.12 TCGA-85-6560-01 11 7488078 7488078 A T SYT9 3'UTR 0.16 TCGA-85-6560-01 11 76371843 76371843 G T LRRC32 Missense_Mutation p.P265Q 0.32 tolerated(0.1) possibly_damaging(0.776) TCGA-85-6560-01 11 85422208 85422208 G A SYTL2 Missense_Mutation p.P931L 0.20 deleterious(0.03) probably_damaging(0.976) TCGA-85-6560-01 11 86519439 86519439 C T PRSS23 Missense_Mutation p.L252F 0.35 deleterious(0) probably_damaging(1) TCGA-85-6560-01 11 9450367 9450367 T G IPO7 Intron 0.15 TCGA-85-6560-01 11 95712801 95712801 C A MAML2 Nonsense_Mutation p.G928* 0.29 TCGA-85-6560-01 12 109702913 109702913 A G ACACB Splice_Site p.X2315_splice 0.47 TCGA-85-6560-01 12 10978480 10978480 G A TAS2R10 Missense_Mutation p.P130L 0.13 tolerated(0.65) benign(0.006) TCGA-85-6560-01 12 111744770 111744770 G T CUX2 Missense_Mutation p.A302S 0.23 tolerated(0.15) possibly_damaging(0.851) TCGA-85-6560-01 12 117658044 117658044 G A NOS1 Silent p.L1370L 0.50 TCGA-85-6560-01 12 124848272 124848272 G A NCOR2 Silent p.L961L 0.06 TCGA-85-6560-01 12 130912803 130912805 TCG - RIMBP2 In_Frame_Del p.D760del 0.33 TCGA-85-6560-01 12 18890371 18890371 G A PLCZ1 5'UTR 0.32 TCGA-85-6560-01 12 21327635 21327635 C T SLCO1B1 Silent p.F117F 0.26 TCGA-85-6560-01 12 27573381 27573381 C G ARNTL2 Silent p.A609A 0.36 TCGA-85-6560-01 12 32858792 32858792 C G DNM1L Intron 0.29 TCGA-85-6560-01 12 41966568 41966568 G C PDZRN4 Missense_Mutation p.E663Q 0.25 tolerated(0.39) probably_damaging(0.931) TCGA-85-6560-01 12 53553951 53553951 G A CSAD Silent p.G400G 0.19 TCGA-85-6560-01 12 56420643 56420643 A G IKZF4 Missense_Mutation p.K122R 0.51 tolerated(0.47) benign(0.379) TCGA-85-6560-01 12 56667527 56667527 G T CS Silent p.T358T 0.15 TCGA-85-6560-01 12 57971825 57971825 A G KIF5A Missense_Mutation p.K799E 0.55 deleterious(0) probably_damaging(0.996) TCGA-85-6560-01 12 66152119 66152119 A C RPSAP52 RNA 0.25 TCGA-85-6560-01 12 7647890 7647890 C A CD163 Nonsense_Mutation p.G403* 0.29 TCGA-85-6560-01 12 88388448 88388448 C G C12orf50 Missense_Mutation p.G185A 0.16 tolerated(0.57) benign(0.204) TCGA-85-6560-01 12 91366688 91366688 G T EPYC Missense_Mutation p.A137D 0.39 tolerated(0.24) benign(0.098) TCGA-85-6560-01 12 98993478 98993478 G T SLC25A3 Intron 0.29 TCGA-85-6560-01 13 102250553 102250553 G T ITGBL1 Missense_Mutation p.G307W 0.33 deleterious(0) probably_damaging(1) TCGA-85-6560-01 13 108863160 108863160 C A LIG4 Missense_Mutation p.D153Y 0.13 deleterious(0) probably_damaging(0.995) TCGA-85-6560-01 13 108955864 108955864 C G TNFSF13B Silent p.V219V 0.32 TCGA-85-6560-01 13 111114723 111114723 G T COL4A2 Missense_Mutation p.G590C 0.18 probably_damaging(1) TCGA-85-6560-01 13 113803481 113803481 C A F10 Missense_Mutation p.Q373K 0.31 tolerated(0.97) benign(0.029) TCGA-85-6560-01 13 114758029 114758029 C T RASA3 Missense_Mutation p.G726E 0.16 tolerated(0.13) probably_damaging(1) TCGA-85-6560-01 13 25284996 25284996 C A ATP12A Silent p.L994L 0.23 TCGA-85-6560-01 13 37678878 37678878 G T CSNK1A1L Missense_Mutation p.H172Q 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-85-6560-01 13 42877103 42877103 G T AKAP11 Missense_Mutation p.K1407N 0.27 tolerated(0.54) benign(0.002) TCGA-85-6560-01 13 42877104 42877104 G T AKAP11 Nonsense_Mutation p.E1408* 0.23 TCGA-85-6560-01 13 52604567 52604567 C T UTP14C Missense_Mutation p.R543W 0.05 deleterious(0.03) benign(0.009) TCGA-85-6560-01 13 70293558 70293558 C A KLHL1 Missense_Mutation p.G653V 0.19 deleterious(0) probably_damaging(0.999) TCGA-85-6560-01 13 73636112 73636112 T G KLF5 Silent p.T125T 0.20 TCGA-85-6560-01 13 99948125 99948125 G T GPR183 Missense_Mutation p.A92E 0.18 deleterious(0.01) probably_damaging(0.991) TCGA-85-6560-01 13 99948126 99948126 C T GPR183 Missense_Mutation p.A92T 0.18 deleterious(0.05) probably_damaging(0.987) TCGA-85-6560-01 14 102028815 102028815 G A DIO3 3'UTR 0.25 TCGA-85-6560-01 14 102900620 102900620 G C TECPR2 Missense_Mutation p.C489S 0.24 tolerated_low_confidence(0.25) benign(0.009) TCGA-85-6560-01 14 105398141 105398141 G A PLD4 Silent p.L325L 0.35 TCGA-85-6560-01 14 105420486 105420486 G T AHNAK2 Silent p.A434A 0.22 TCGA-85-6560-01 14 21979304 21979304 C A METTL3 Missense_Mutation p.R21M 0.25 deleterious(0) probably_damaging(0.957) TCGA-85-6560-01 14 23866020 23866020 G A MYH6 Silent p.R725R 0.32 TCGA-85-6560-01 14 24626791 24626791 A T RNF31 Missense_Mutation p.T891S 0.29 tolerated(1) benign(0.041) TCGA-85-6560-01 14 24877435 24877435 G T NYNRIN Nonsense_Mutation p.E187* 0.38 TCGA-85-6560-01 14 39639306 39639306 C T TRAPPC6B 5'UTR 0.11 TCGA-85-6560-01 14 47566248 47566248 G A MDGA2 Missense_Mutation p.T335I 0.22 tolerated(0.22) benign(0.015) TCGA-85-6560-01 14 70444656 70444656 T A SMOC1 Nonsense_Mutation p.L167* 0.29 TCGA-85-6560-01 14 70990987 70990987 C A ADAM20 Missense_Mutation p.S213I 0.20 tolerated(0.07) benign(0.077) TCGA-85-6560-01 14 70991078 70991078 G C ADAM20 Missense_Mutation p.L183V 0.21 deleterious(0) benign(0.027) TCGA-85-6560-01 14 75276445 75276445 A T YLPM1 Silent p.P1628P 0.18 TCGA-85-6560-01 14 81609986 81609986 C A TSHR Silent p.R528R 0.25 TCGA-85-6560-01 14 92949175 92949175 C A SLC24A4 Nonsense_Mutation p.Y469* 0.27 TCGA-85-6560-01 15 101169888 101169888 C T ASB7 Missense_Mutation p.P153L 0.12 deleterious(0.01) probably_damaging(0.98) TCGA-85-6560-01 15 22868841 22868841 A G TUBGCP5 Missense_Mutation p.I905V 0.29 tolerated(0.16) possibly_damaging(0.68) TCGA-85-6560-01 15 26828552 26828552 C G GABRB3 Silent p.T157T 0.47 TCGA-85-6560-01 15 50786304 50786304 G C USP8 Missense_Mutation p.E829Q 0.23 deleterious(0.01) probably_damaging(0.919) TCGA-85-6560-01 15 52098581 52098581 A C TMOD2 Missense_Mutation p.Q295P 0.44 tolerated(0.26) probably_damaging(0.961) TCGA-85-6560-01 15 67524205 67524205 C T AAGAB Missense_Mutation p.R161Q 0.26 deleterious(0.02) benign(0.438) TCGA-85-6560-01 15 71272438 71272438 A T LRRC49 Splice_Site p.X313_splice 0.52 TCGA-85-6560-01 15 72700065 72700065 G T TMEM202 Missense_Mutation p.R218I 0.51 deleterious(0.01) benign(0.424) TCGA-85-6560-01 15 86807771 86807771 C A AGBL1 Missense_Mutation p.P411T 0.47 tolerated(0.32) benign(0.118) TCGA-85-6560-01 15 86807772 86807772 C A AGBL1 Missense_Mutation p.P411H 0.49 tolerated(0.46) benign(0.016) TCGA-85-6560-01 15 86807907 86807907 A C AGBL1 Missense_Mutation p.H456P 0.23 deleterious(0.01) benign(0.048) TCGA-85-6560-01 15 90349346 90349346 C G ANPEP Missense_Mutation p.E157Q 0.50 tolerated(0.47) possibly_damaging(0.482) TCGA-85-6560-01 16 18893616 18893616 G A SMG1 Silent p.V388V 0.27 TCGA-85-6560-01 16 20370847 20370847 G A PDILT Silent p.L517L 0.10 TCGA-85-6560-01 16 2816783 2816784 - G SRRM2 Frame_Shift_Ins p.D2086* 0.18 TCGA-85-6560-01 16 28601690 28601690 C T CCDC101 Missense_Mutation p.R165W 0.15 tolerated(0.1) benign(0.37) TCGA-85-6560-01 16 29910346 29910346 C T SEZ6L2 5'UTR 0.33 TCGA-85-6560-01 16 3119075 3119075 G T IL32 Missense_Mutation p.A96S 0.09 tolerated(0.5) benign(0.303) TCGA-85-6560-01 16 3614973 3614973 G T NLRC3 Missense_Mutation p.A69D 0.60 tolerated(0.13) benign(0.412) TCGA-85-6560-01 16 46697028 46697028 T C VPS35 Missense_Mutation p.H565R 0.29 tolerated(0.26) benign(0.179) TCGA-85-6560-01 16 58054050 58054050 C G USB1 Missense_Mutation p.I233M 0.20 tolerated(0.05) benign(0.168) TCGA-85-6560-01 16 613551 613551 A T C16orf11 Missense_Mutation p.H86L 0.36 tolerated(0.14) benign(0.002) TCGA-85-6560-01 16 66643809 66643809 C A CMTM3 Silent p.I141I 0.44 TCGA-85-6560-01 16 67685325 67685325 G T RLTPR Missense_Mutation p.A779S 0.13 tolerated(0.09) possibly_damaging(0.691) TCGA-85-6560-01 16 68156136 68156136 C G NFATC3 Missense_Mutation p.S117C 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-85-6560-01 16 70688511 70688511 G A IL34 Silent p.E33E 0.35 TCGA-85-6560-01 16 71715746 71715746 C T PHLPP2 Silent p.E266E 0.39 TCGA-85-6560-01 16 72829353 72829353 T C ZFHX3 Missense_Mutation p.T2410A 0.18 benign(0.057) TCGA-85-6560-01 17 11520921 11520922 - A DNAH9 Frame_Shift_Ins p.N367Kfs*9 0.27 TCGA-85-6560-01 17 11725895 11725895 G C DNAH9 Missense_Mutation p.L2997F 0.44 possibly_damaging(0.867) TCGA-85-6560-01 17 15492234 15492234 T A CDRT1 3'UTR 0.25 TCGA-85-6560-01 17 16526311 16526311 T C ZNF624 Missense_Mutation p.H630R 0.03 deleterious(0) probably_damaging(0.995) TCGA-85-6560-01 17 16527678 16527678 C T ZNF624 Silent p.R174R 0.47 TCGA-85-6560-01 17 28435113 28435113 T C EFCAB5 3'UTR 0.47 TCGA-85-6560-01 17 34185239 34185239 G T C17orf66 Missense_Mutation p.L373M 0.22 tolerated(0.08) possibly_damaging(0.832) TCGA-85-6560-01 17 3493612 3493612 C T SHPK Missense_Mutation p.D227N 0.46 deleterious(0.04) benign(0.141) TCGA-85-6560-01 17 39274088 39274088 G A KRTAP4-11 Silent p.C160C 0.31 TCGA-85-6560-01 17 46058879 46058879 G T CDK5RAP3 3'UTR 0.23 TCGA-85-6560-01 17 48165193 48165193 G T ITGA3 Missense_Mutation p.G1002V 0.48 deleterious(0) probably_damaging(1) TCGA-85-6560-01 17 48695256 48695256 C T CACNA1G Missense_Mutation p.A1731V 0.09 deleterious(0) probably_damaging(1) TCGA-85-6560-01 17 56280656 56280656 C G EPX Missense_Mutation p.F641L 0.35 deleterious(0.03) probably_damaging(0.987) TCGA-85-6560-01 17 56682439 56682439 C A TEX14 Missense_Mutation p.Q418H 0.15 deleterious(0) probably_damaging(0.948) TCGA-85-6560-01 17 7578525 7578525 G C TP53 Missense_Mutation p.C135W 0.40 deleterious(0) probably_damaging(1) TCGA-85-6560-01 17 76535873 76535873 A C DNAH17 Missense_Mutation p.F874L 0.41 benign(0.003) TCGA-85-6560-01 17 7750709 7750709 G C KDM6B Missense_Mutation p.S399T 0.13 unknown(0) TCGA-85-6560-01 17 77923604 77923604 G A TBC1D16 Missense_Mutation p.R440C 0.22 deleterious(0.02) benign(0.022) TCGA-85-6560-01 17 80373349 80373349 G A OGFOD3 Missense_Mutation p.R77C 0.15 deleterious(0) probably_damaging(0.939) TCGA-85-6560-01 17 8077441 8077441 C A TMEM107 3'UTR 0.27 TCGA-85-6560-01 18 28935352 28935352 T A DSG1 3'UTR 0.36 TCGA-85-6560-01 18 2921569 2921569 T C LPIN2 Missense_Mutation p.K802E 0.59 tolerated(0.79) benign(0.021) TCGA-85-6560-01 18 29493400 29493400 G A TRAPPC8 Nonsense_Mutation p.R235* 0.27 TCGA-85-6560-01 18 30254622 30254622 A C KLHL14 Nonstop_Mutation p.*629Eext*7 0.47 TCGA-85-6560-01 18 40854120 40854120 A T SYT4 Missense_Mutation p.L92M 0.54 deleterious(0.05) probably_damaging(0.999) TCGA-85-6560-01 18 42530710 42530710 A G SETBP1 Missense_Mutation p.K469E 0.44 deleterious(0.01) probably_damaging(0.994) TCGA-85-6560-01 18 42531632 42531632 T A SETBP1 Missense_Mutation p.M776K 0.51 tolerated(0.06) benign(0.133) TCGA-85-6560-01 18 46284390 46284390 G T CTIF Missense_Mutation p.G229W 0.50 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-85-6560-01 18 56939814 56939814 C T RAX Missense_Mutation p.E108K 0.50 tolerated(0.06) possibly_damaging(0.495) TCGA-85-6560-01 19 11096082 11096082 G T SMARCA4 Splice_Site p.X119_splice 0.71 TCGA-85-6560-01 19 11489435 11489435 A T EPOR Missense_Mutation p.W283R 0.43 deleterious(0) probably_damaging(0.999) TCGA-85-6560-01 19 15535478 15535478 C T WIZ Missense_Mutation p.A659T 0.22 tolerated(0.6) benign(0.015) TCGA-85-6560-01 19 19042181 19042181 C A HOMER3 Nonsense_Mutation p.E283* 0.47 TCGA-85-6560-01 19 19369455 19369455 C T HAPLN4 Missense_Mutation p.G232S 0.25 deleterious(0.01) probably_damaging(0.996) TCGA-85-6560-01 19 19389575 19389575 C A SUGP1 Missense_Mutation p.R520L 0.32 deleterious(0) possibly_damaging(0.593) TCGA-85-6560-01 19 2040090 2040090 G A MKNK2 Intron 0.33 TCGA-85-6560-01 19 22836207 22836207 A C ZNF492 Missense_Mutation p.L2F 0.41 deleterious(0.01) possibly_damaging(0.86) TCGA-85-6560-01 19 36051408 36051408 C A ATP4A Missense_Mutation p.R215L 0.51 deleterious(0.04) probably_damaging(0.998) TCGA-85-6560-01 19 38916724 38916724 C A RASGRP4 Missense_Mutation p.R3I 0.52 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-85-6560-01 19 42752640 42752640 A C ERF Missense_Mutation p.S542A 0.62 deleterious_low_confidence(0) benign(0.277) TCGA-85-6560-01 19 4330043 4330043 C A STAP2 Missense_Mutation p.D124Y 0.38 deleterious(0.02) benign(0.1) TCGA-85-6560-01 19 4352936 4352936 G C MPND Missense_Mutation p.E192Q 0.57 tolerated(0.19) benign(0.032) TCGA-85-6560-01 19 43763205 43763206 - C PSG9 Frame_Shift_Ins p.K265* 0.35 TCGA-85-6560-01 19 48664717 48664717 G A LIG1 Missense_Mutation p.P52L 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-85-6560-01 19 48807010 48807010 G C CCDC114 Silent p.T258T 0.41 TCGA-85-6560-01 19 50322430 50322430 A G MED25 Missense_Mutation p.Y61C 0.49 deleterious(0.04) probably_damaging(0.99) TCGA-85-6560-01 19 51322498 51322498 C T KLK1 Silent p.V247V 0.26 TCGA-85-6560-01 19 52004673 52004673 G A SIGLEC12 Silent p.T105T 0.40 TCGA-85-6560-01 19 53740440 53740440 G T ZNF677 Missense_Mutation p.P514T 0.30 deleterious(0) probably_damaging(0.997) TCGA-85-6560-01 19 55590382 55590382 A G EPS8L1 Missense_Mutation p.Y25C 0.45 deleterious(0) probably_damaging(0.999) TCGA-85-6560-01 19 56104586 56104586 C A FIZ1 Missense_Mutation p.A241S 0.60 tolerated(0.72) unknown(0) TCGA-85-6560-01 19 56423967 56423967 C G NLRP13 Missense_Mutation p.E406Q 0.47 tolerated(0.46) benign(0.058) TCGA-85-6560-01 1 103540304 103540304 T A COL11A1 Missense_Mutation p.K174I 0.26 probably_damaging(1) TCGA-85-6560-01 1 109794997 109794997 G A CELSR2 Missense_Mutation p.A766T 0.30 tolerated(0.22) benign(0.241) TCGA-85-6560-01 1 110258587 110258587 A G GSTM5 Intron 0.20 TCGA-85-6560-01 1 110996617 110996617 C A PROK1 Missense_Mutation p.T36N 0.34 tolerated(0.12) possibly_damaging(0.661) TCGA-85-6560-01 1 114308980 114308980 G A RSBN1 Silent p.F677F 0.40 TCGA-85-6560-01 1 11589694 11589694 C A PTCHD2 Silent p.S960S 0.13 TCGA-85-6560-01 1 151214676 151214676 A G PIP5K1A Missense_Mutation p.I481V 0.20 tolerated(0.51) benign(0.001) TCGA-85-6560-01 1 151237918 151237918 A G PSMD4 Missense_Mutation p.K163E 0.24 deleterious(0.03) probably_damaging(0.981) TCGA-85-6560-01 1 151372480 151372480 C T PSMB4 Missense_Mutation p.S55L 0.16 deleterious(0) probably_damaging(1) TCGA-85-6560-01 1 152192197 152192197 G C HRNR Missense_Mutation p.H636Q 0.16 unknown(0) TCGA-85-6560-01 1 152636715 152636715 C G LCE2D Missense_Mutation p.S45C 0.17 tolerated(0.1) unknown(0) TCGA-85-6560-01 1 154029319 154029319 T G NUP210L Missense_Mutation p.K1071T 0.33 deleterious(0.02) possibly_damaging(0.833) TCGA-85-6560-01 1 154544245 154544245 G A CHRNB2 Missense_Mutation p.V316M 0.15 deleterious(0) probably_damaging(0.994) TCGA-85-6560-01 1 158226630 158226630 A G CD1A Missense_Mutation p.Q220R 0.18 deleterious(0.05) possibly_damaging(0.489) TCGA-85-6560-01 1 158517747 158517747 A T OR6Y1 Missense_Mutation p.I50N 0.17 deleterious(0) probably_damaging(0.973) TCGA-85-6560-01 1 158655087 158655087 C T SPTA1 Silent p.Q25Q 0.20 TCGA-85-6560-01 1 15905419 15905419 C T AGMAT Missense_Mutation p.V219M 0.11 tolerated(0.1) probably_damaging(1) TCGA-85-6560-01 1 159779427 159779427 C T FCRL6 Silent p.N280N 0.33 TCGA-85-6560-01 1 159900553 159900553 T C IGSF9 Missense_Mutation p.Q581R 0.17 deleterious(0) probably_damaging(0.996) TCGA-85-6560-01 1 160784267 160784267 A G LY9 Missense_Mutation p.E263G 0.19 tolerated(0.23) probably_damaging(0.948) TCGA-85-6560-01 1 161599808 161599808 C T FCGR3B Missense_Mutation p.V63M 0.49 deleterious(0.03) possibly_damaging(0.587) TCGA-85-6560-01 1 16269916 16269916 C T ZBTB17 Missense_Mutation p.V559I 0.10 tolerated(0.07) benign(0.249) TCGA-85-6560-01 1 168260434 168260434 G T TBX19 Silent p.G80G 0.24 TCGA-85-6560-01 1 16953754 16953754 C A CROCCP2 3'Flank 0.08 TCGA-85-6560-01 1 169696587 169696587 G T SELE Nonsense_Mutation p.C516* 0.40 TCGA-85-6560-01 1 169930205 169930205 C G KIFAP3 Missense_Mutation p.D719H 0.10 deleterious(0.01) probably_damaging(0.992) TCGA-85-6560-01 1 171173031 171173031 T A FMO2 Missense_Mutation p.W219R 0.17 deleterious(0) probably_damaging(1) TCGA-85-6560-01 1 172555011 172555011 A G SUCO Missense_Mutation p.I527M 0.40 tolerated(0.1) benign(0.027) TCGA-85-6560-01 1 172558043 172558043 A T SUCO Missense_Mutation p.Q601L 0.21 deleterious(0.04) possibly_damaging(0.722) TCGA-85-6560-01 1 175048476 175048476 C A TNN Missense_Mutation p.S139R 0.24 tolerated(0.06) benign(0.001) TCGA-85-6560-01 1 175067548 175067548 G A TNN Missense_Mutation p.A646T 0.25 tolerated(0.57) benign(0.003) TCGA-85-6560-01 1 177250324 177250324 C A BRINP2 Missense_Mutation p.P671H 0.37 deleterious(0.04) benign(0.024) TCGA-85-6560-01 1 179782944 179782944 G T FAM163A Missense_Mutation p.V42F 0.41 deleterious(0.02) benign(0.152) TCGA-85-6560-01 1 182026108 182026108 G A ZNF648 Silent p.R346R 0.33 TCGA-85-6560-01 1 185159726 185159726 G C SWT1 Missense_Mutation p.C492S 0.12 deleterious(0) probably_damaging(0.914) TCGA-85-6560-01 1 186114606 186114606 C T HMCN1 Missense_Mutation p.R4780W 0.44 probably_damaging(0.995) TCGA-85-6560-01 1 197112556 197112556 C A ASPM Missense_Mutation p.V276L 0.18 tolerated(0.45) benign(0.001) TCGA-85-6560-01 1 201333496 201333496 C A TNNT2 Missense_Mutation p.R130L 0.40 deleterious(0) possibly_damaging(0.568) TCGA-85-6560-01 1 203455862 203455862 C T PRELP Silent p.N334N 0.15 TCGA-85-6560-01 1 204438248 204438248 T A PIK3C2B Missense_Mutation p.Y228F 0.41 tolerated_low_confidence(0.25) benign(0.004) TCGA-85-6560-01 1 209796418 209796418 A T LAMB3 Missense_Mutation p.L822H 0.15 deleterious(0.01) possibly_damaging(0.823) TCGA-85-6560-01 1 209907787 209907787 T C HSD11B1 Missense_Mutation p.L267P 0.41 deleterious(0) probably_damaging(0.979) TCGA-85-6560-01 1 21014254 21014254 G T KIF17 Missense_Mutation p.A522E 0.24 tolerated_low_confidence(1) benign(0.001) TCGA-85-6560-01 1 212588150 212588150 A G TMEM206 5'UTR 0.47 TCGA-85-6560-01 1 21904050 21904050 G A ALPL Missense_Mutation p.G495D 0.43 tolerated(0.95) benign(0.001) TCGA-85-6560-01 1 22150006 22150006 C T LDLRAD2 3'UTR 0.23 TCGA-85-6560-01 1 226128595 226128595 G T LEFTY2 Missense_Mutation p.F82L 0.43 tolerated(0.58) benign(0.257) TCGA-85-6560-01 1 227842954 227842954 C T ZNF678 Missense_Mutation p.H335Y 0.16 tolerated(0.89) benign(0.026) TCGA-85-6560-01 1 229730793 229730793 G A TAF5L Missense_Mutation p.H341Y 0.46 deleterious(0) probably_damaging(1) TCGA-85-6560-01 1 23191524 23191524 C T EPHB2 Silent p.R374R 0.04 TCGA-85-6560-01 1 232941915 232941915 A G MAP10 Silent p.P382P 0.39 TCGA-85-6560-01 1 237919650 237919650 G A RYR2 Silent p.A3736A 0.19 TCGA-85-6560-01 1 237948177 237948177 G C RYR2 Missense_Mutation p.G4389R 0.17 probably_damaging(1) TCGA-85-6560-01 1 241904845 241904845 T C WDR64 Missense_Mutation p.L440S 0.13 deleterious(0) probably_damaging(0.999) TCGA-85-6560-01 1 245912838 245912838 G A SMYD3 3'Flank 0.16 TCGA-85-6560-01 1 248004752 248004752 C A OR11L1 Missense_Mutation p.W149C 0.23 deleterious(0) probably_damaging(1) TCGA-85-6560-01 1 248129099 248129099 T C OR2AK2 Missense_Mutation p.C156R 0.41 deleterious(0) probably_damaging(0.995) TCGA-85-6560-01 1 248436296 248436296 G T OR2T33 Missense_Mutation p.A274D 0.15 deleterious(0) possibly_damaging(0.831) TCGA-85-6560-01 1 248685153 248685153 T C OR2G6 Missense_Mutation p.V69A 0.06 deleterious(0) benign(0.141) TCGA-85-6560-01 1 2520063 2520063 A C FAM213B Missense_Mutation p.K183N 0.19 deleterious(0.01) possibly_damaging(0.894) TCGA-85-6560-01 1 31906004 31906004 G T SERINC2 Missense_Mutation p.V411F 0.21 deleterious(0) possibly_damaging(0.46) TCGA-85-6560-01 1 33557648 33557648 T C ADC Intron 0.36 TCGA-85-6560-01 1 34330145 34330145 G C HMGB4 Missense_Mutation p.W118S 0.17 deleterious(0.02) probably_damaging(1) TCGA-85-6560-01 1 37270665 37270665 C A GRIK3 Missense_Mutation p.A830S 0.40 tolerated(0.24) benign(0.307) TCGA-85-6560-01 1 44415611 44415611 C A IPO13 Missense_Mutation p.P203T 0.24 deleterious(0.03) benign(0.326) TCGA-85-6560-01 1 44687311 44687311 G A ERI3 Silent p.D311D 0.21 TCGA-85-6560-01 1 45292393 45292393 G A PTCH2 Missense_Mutation p.R915C 0.12 deleterious(0.01) possibly_damaging(0.601) TCGA-85-6560-01 1 53370344 53370344 C A ECHDC2 Missense_Mutation p.A226S 0.26 tolerated(0.28) benign(0.017) TCGA-85-6560-01 1 54509059 54509060 - T TMEM59 Frame_Shift_Ins p.I177Nfs*7 0.13 TCGA-85-6560-01 1 60538308 60538308 G C C1orf87 Nonsense_Mutation p.S3* 0.30 TCGA-85-6560-01 1 62503707 62503707 C G INADL Missense_Mutation p.P1340A 0.12 tolerated(0.21) benign(0.103) TCGA-85-6560-01 1 62675737 62675737 G T L1TD1 Missense_Mutation p.G431W 0.24 deleterious(0.02) unknown(0) TCGA-85-6560-01 1 62675738 62675738 G T L1TD1 Missense_Mutation p.G431V 0.24 tolerated(0.28) unknown(0) TCGA-85-6560-01 1 65855271 65855271 T C DNAJC6 Missense_Mutation p.Y477H 0.11 tolerated(0.52) benign(0.165) TCGA-85-6560-01 1 67724192 67724192 G A IL23R Missense_Mutation p.S424N 0.04 tolerated(0.09) benign(0.012) TCGA-85-6560-01 1 68910529 68910529 C G RPE65 Missense_Mutation p.E95Q 0.15 tolerated(0.37) probably_damaging(0.941) TCGA-85-6560-01 1 70477548 70477548 A T LRRC7 Missense_Mutation p.Y320F 0.21 tolerated(0.21) probably_damaging(0.986) TCGA-85-6560-01 1 71318361 71318361 G T PTGER3 3'UTR 0.27 TCGA-85-6560-01 1 74507411 74507411 G A LRRIQ3 Missense_Mutation p.R402W 0.39 deleterious(0) possibly_damaging(0.794) TCGA-85-6560-01 1 76384686 76384686 G A ASB17 Missense_Mutation p.S280L 0.22 tolerated(0.13) possibly_damaging(0.849) TCGA-85-6560-01 1 78959186 78959186 C A PTGFR Missense_Mutation p.A253E 0.12 deleterious(0.01) probably_damaging(0.96) TCGA-85-6560-01 1 86965439 86965439 C T CLCA1 Missense_Mutation p.A819V 0.23 deleterious(0.03) benign(0.079) TCGA-85-6560-01 1 92546115 92546115 T C BTBD8 5'UTR 0.12 TCGA-85-6560-01 1 92763522 92763522 C T GLMN Missense_Mutation p.R12K 0.15 tolerated(0.17) benign(0.024) TCGA-85-6560-01 1 94037322 94037322 G C BCAR3 Missense_Mutation p.L627V 0.19 deleterious(0) probably_damaging(0.999) TCGA-85-6560-01 1 94998715 94998715 G C F3 Missense_Mutation p.S174R 0.13 deleterious(0.04) possibly_damaging(0.504) TCGA-85-6560-01 1 9713713 9713713 C A C1orf200 3'UTR 0.32 TCGA-85-6560-01 20 20243735 20243735 G T C20orf26 Missense_Mutation p.A822S 0.43 deleterious(0) possibly_damaging(0.49) TCGA-85-6560-01 20 44839103 44839103 C A CDH22 Missense_Mutation p.D377Y 0.56 deleterious(0) possibly_damaging(0.885) TCGA-85-6560-01 20 49626862 49626862 G A KCNG1 Missense_Mutation p.P5L 0.63 deleterious_low_confidence(0.02) benign(0.122) TCGA-85-6560-01 20 50342406 50342406 A T ATP9A Missense_Mutation p.F93L 0.14 tolerated(0.16) benign(0.034) TCGA-85-6560-01 20 5905692 5905692 C G CHGB Silent p.G677G 0.55 TCGA-85-6560-01 20 60887294 60887294 C T LAMA5 Missense_Mutation p.V3147I 0.20 benign(0.025) TCGA-85-6560-01 20 61527695 61527695 T C DIDO1 Missense_Mutation p.I702V 0.12 benign(0.136) TCGA-85-6560-01 20 62038588 62038588 G T KCNQ2 Missense_Mutation p.S676R 0.70 deleterious(0.04) benign(0.374) TCGA-85-6560-01 20 62187601 62187601 C A C20orf195 Silent p.T195T 0.67 TCGA-85-6560-01 20 62505156 62505156 C T TPD52L2 Nonsense_Mutation p.Q101* 0.25 TCGA-85-6560-01 20 62680665 62680665 G A SOX18 Missense_Mutation p.L69F 0.60 tolerated(0.69) possibly_damaging(0.587) TCGA-85-6560-01 21 11047490 11047490 C G BAGE2 RNA 0.04 TCGA-85-6560-01 21 11047540 11047540 G C BAGE2 RNA 0.04 TCGA-85-6560-01 21 42551398 42551398 G C BACE2 Intron 0.38 TCGA-85-6560-01 21 45959496 45959496 G T KRTAP10-1 Missense_Mutation p.Q180K 0.41 tolerated(0.1) unknown(0) TCGA-85-6560-01 21 46047043 46047043 C A KRTAP10-9 5'UTR 0.46 TCGA-85-6560-01 22 20939445 20939445 C T MED15 Silent p.I674I 0.13 TCGA-85-6560-01 22 24086193 24086193 G C ZNF70 Missense_Mutation p.L379V 0.47 deleterious(0.03) probably_damaging(0.997) TCGA-85-6560-01 22 36907704 36907704 G A EIF3D Silent p.C493C 0.06 TCGA-85-6560-01 22 38512212 38512212 C G PLA2G6 Missense_Mutation p.M583I 0.46 tolerated(0.15) benign(0.123) TCGA-85-6560-01 22 43599895 43599895 T G SCUBE1 3'UTR 0.58 TCGA-85-6560-01 22 46859807 46859807 G A CELSR1 Missense_Mutation p.S1327F 0.14 deleterious(0.02) probably_damaging(0.99) TCGA-85-6560-01 22 50187932 50187932 C A BRD1 Missense_Mutation p.L703F 0.44 tolerated(0.08) probably_damaging(0.98) TCGA-85-6560-01 2 102480484 102480484 A C MAP4K4 Intron 0.13 TCGA-85-6560-01 2 102984394 102984394 G T IL18R1 Missense_Mutation p.W56C 0.37 deleterious(0.01) benign(0.431) TCGA-85-6560-01 2 113405296 113405296 G A SLC20A1 Missense_Mutation p.R181H 0.21 tolerated(0.12) benign(0.269) TCGA-85-6560-01 2 1204851 1204851 C A SNTG2 Missense_Mutation p.D218E 0.34 deleterious(0) probably_damaging(0.917) TCGA-85-6560-01 2 125261973 125261973 G A CNTNAP5 Silent p.G388G 0.37 TCGA-85-6560-01 2 136552233 136552233 T C LCT Missense_Mutation p.I1697V 0.32 tolerated(0.59) benign(0.003) TCGA-85-6560-01 2 155099274 155099274 G T GALNT13 Missense_Mutation p.R181M 0.34 deleterious(0) probably_damaging(0.96) TCGA-85-6560-01 2 16082189 16082189 G A MYCN Translation_Start_Site p.M1? 0.33 deleterious_low_confidence(0) benign(0.026) TCGA-85-6560-01 2 178565854 178565854 T C PDE11A Missense_Mutation p.S747G 0.27 deleterious(0) benign(0.135) TCGA-85-6560-01 2 178565890 178565890 G T PDE11A Missense_Mutation p.H735N 0.25 deleterious(0) probably_damaging(0.932) TCGA-85-6560-01 2 179196319 179196319 A G OSBPL6 Missense_Mutation p.K120R 0.20 deleterious(0.02) probably_damaging(0.922) TCGA-85-6560-01 2 179410595 179410595 G T TTN Missense_Mutation p.P31790T 0.19 TCGA-85-6560-01 2 179453963 179453963 G T TTN Missense_Mutation p.S20830Y 0.18 TCGA-85-6560-01 2 179643974 179643974 A T TTN Silent p.S1315S 0.15 TCGA-85-6560-01 2 207174722 207174722 C T ZDBF2 Missense_Mutation p.P1824S 0.08 tolerated(0.16) possibly_damaging(0.641) TCGA-85-6560-01 2 207412220 207412220 A T ADAM23 Missense_Mutation p.N263I 0.14 tolerated(0.07) benign(0.01) TCGA-85-6560-01 2 207509077 207509077 G T AC010731.4 RNA 0.46 TCGA-85-6560-01 2 211460258 211460258 G T CPS1 Missense_Mutation p.Q443H 0.19 deleterious(0) probably_damaging(0.999) TCGA-85-6560-01 2 220501521 220501521 G A SLC4A3 Silent p.S847S 0.35 TCGA-85-6560-01 2 223436659 223436659 G A FARSB Silent p.D567D 0.08 TCGA-85-6560-01 2 233410280 233410280 C A CHRNG Silent p.R470R 0.44 TCGA-85-6560-01 2 234091054 234091054 A T INPP5D Splice_Site p.X679_splice 0.16 TCGA-85-6560-01 2 238275720 238275720 C T COL6A3 Missense_Mutation p.D1704N 0.10 possibly_damaging(0.74) TCGA-85-6560-01 2 240985204 240985204 C A OR6B3 Missense_Mutation p.G96W 0.18 deleterious(0) probably_damaging(0.998) TCGA-85-6560-01 2 242045846 242045846 G A PASK 3'UTR 0.08 TCGA-85-6560-01 2 242287601 242287601 G C SEPT2 Missense_Mutation p.A327P 0.42 deleterious(0.02) possibly_damaging(0.775) TCGA-85-6560-01 2 27440793 27440793 C T CAD Missense_Mutation p.S44F 0.11 deleterious(0) probably_damaging(1) TCGA-85-6560-01 2 27560185 27560185 C A GTF3C2 Missense_Mutation p.Q351H 0.10 deleterious(0.04) possibly_damaging(0.783) TCGA-85-6560-01 2 32725073 32725073 G A BIRC6 Silent p.S2976S 0.33 TCGA-85-6560-01 2 33500091 33500091 G A LTBP1 Missense_Mutation p.E935K 0.39 tolerated(0.25) benign(0.031) TCGA-85-6560-01 2 33784046 33784046 G A RASGRP3 Silent p.T671T 0.09 TCGA-85-6560-01 2 37302672 37302672 G C HEATR5B Missense_Mutation p.L185V 0.28 deleterious(0.05) benign(0.008) TCGA-85-6560-01 2 37455705 37455705 T A CEBPZ Nonsense_Mutation p.K211* 0.37 TCGA-85-6560-01 2 39477659 39477659 A C MAP4K3 3'UTR 0.26 TCGA-85-6560-01 2 42284382 42284382 G T PKDCC Missense_Mutation p.S415I 0.34 tolerated(0.38) benign(0.174) TCGA-85-6560-01 2 48915920 48915920 T A LHCGR Missense_Mutation p.K339M 0.17 tolerated(0.06) possibly_damaging(0.687) TCGA-85-6560-01 2 74783971 74783971 G T DOK1 Silent p.R392R 0.37 TCGA-85-6560-01 2 79313498 79313498 T C REG1B Missense_Mutation p.K106E 0.37 tolerated(0.21) possibly_damaging(0.477) TCGA-85-6560-01 2 79363247 79363247 G T REG1P RNA 0.38 TCGA-85-6560-01 2 80136890 80136890 G C CTNNA2 Silent p.A341A 0.32 TCGA-85-6560-01 2 80782831 80782831 G A CTNNA2 Silent p.L518L 0.26 TCGA-85-6560-01 2 8940553 8940553 C T KIDINS220 Missense_Mutation p.A293T 0.25 deleterious(0) probably_damaging(1) TCGA-85-6560-01 2 89976481 89976481 C A IGKV2D-30 Missense_Mutation p.H118N 0.27 tolerated(0.39) benign(0.102) TCGA-85-6560-01 2 95770424 95770424 G A MRPS5 Missense_Mutation p.R242C 0.24 deleterious(0.03) probably_damaging(0.969) TCGA-85-6560-01 2 96940842 96940843 AC - SNRNP200 Frame_Shift_Del p.Y2107Lfs*4 0.15 TCGA-85-6560-01 3 108773610 108773610 T G MORC1 Missense_Mutation p.Q432P 0.34 deleterious(0.01) possibly_damaging(0.736) TCGA-85-6560-01 3 113658813 113658813 G A GRAMD1C Missense_Mutation p.R591H 0.05 tolerated(0.27) benign(0.007) TCGA-85-6560-01 3 113866360 113866360 C - DRD3 Frame_Shift_Del p.G143Dfs*11 0.27 TCGA-85-6560-01 3 114069951 114069951 C G ZBTB20 Missense_Mutation p.G325A 0.23 deleterious(0) probably_damaging(0.981) TCGA-85-6560-01 3 119459492 119459492 A C MAATS1 Missense_Mutation p.K544Q 0.33 deleterious(0.01) probably_damaging(0.97) TCGA-85-6560-01 3 119886619 119886620 - G GPR156 Frame_Shift_Ins p.S569Lfs*27 0.13 TCGA-85-6560-01 3 121126218 121126218 A G STXBP5L Missense_Mutation p.R930G 0.28 tolerated(0.11) benign(0.099) TCGA-85-6560-01 3 121228452 121228452 T G POLQ Missense_Mutation p.M639L 0.23 deleterious(0.01) benign(0.012) TCGA-85-6560-01 3 121448165 121448165 T G GOLGB1 Missense_Mutation p.N91T 0.22 benign(0.209) TCGA-85-6560-01 3 121980410 121980410 C T CASR Silent p.N176N 0.14 TCGA-85-6560-01 3 124953165 124953165 G C ZNF148 Missense_Mutation p.P226A 0.31 deleterious(0.01) benign(0.043) TCGA-85-6560-01 3 128890383 128890383 T C CNBP Splice_Site p.X42_splice 0.29 TCGA-85-6560-01 3 12954962 12954962 T C IQSEC1 Missense_Mutation p.Q775R 0.46 deleterious(0) probably_damaging(0.919) TCGA-85-6560-01 3 134967229 134967229 C A EPHB1 Silent p.L856L 0.37 TCGA-85-6560-01 3 137907372 137907372 G A ARMC8 Translation_Start_Site p.M1? 0.26 deleterious_low_confidence(0) benign(0) TCGA-85-6560-01 3 142840794 142840794 A G CHST2 Missense_Mutation p.K379R 0.22 tolerated(0.17) probably_damaging(0.992) TCGA-85-6560-01 3 150263884 150263884 C A SERP1 Missense_Mutation p.K13N 0.26 deleterious(0.01) probably_damaging(0.987) TCGA-85-6560-01 3 155232542 155232542 C A PLCH1 Silent p.T522T 0.39 TCGA-85-6560-01 3 164764764 164764764 G C SI Missense_Mutation p.F584L 0.14 tolerated(0.18) benign(0.333) TCGA-85-6560-01 3 165547903 165547903 C T BCHE Missense_Mutation p.V307I 0.21 tolerated(0.09) benign(0.01) TCGA-85-6560-01 3 178936099 178936099 G C PIK3CA Missense_Mutation p.E547D 0.36 tolerated(0.25) possibly_damaging(0.503) TCGA-85-6560-01 3 186507128 186507131 TTCT - EIF4A2 3'UTR 0.10 TCGA-85-6560-01 3 194062093 194062093 C T CPN2 Missense_Mutation p.V447I 0.13 tolerated(0.6) benign(0.01) TCGA-85-6560-01 3 33602366 33602366 T C CLASP2 Missense_Mutation p.K963R 0.53 deleterious(0.03) probably_damaging(0.993) TCGA-85-6560-01 3 35758790 35758790 T A ARPP21 Missense_Mutation p.S278R 0.43 tolerated(0.29) benign(0.017) TCGA-85-6560-01 3 42906393 42906393 T A ACKR2 Missense_Mutation p.F133L 0.24 deleterious(0.03) probably_damaging(1) TCGA-85-6560-01 3 64587633 64587633 C G ADAMTS9 Missense_Mutation p.G1335A 0.46 deleterious(0) possibly_damaging(0.855) TCGA-85-6560-01 3 88039993 88039993 G T HTR1F Missense_Mutation p.G32W 0.30 deleterious(0) possibly_damaging(0.447) TCGA-85-6560-01 3 89176407 89176407 C G EPHA3 Missense_Mutation p.S46C 0.31 deleterious(0) probably_damaging(0.997) TCGA-85-6560-01 4 106888550 106888550 C - NPNT Frame_Shift_Del p.H548Mfs*34 0.26 TCGA-85-6560-01 4 128938586 128938587 CT - C4orf29 Frame_Shift_Del p.L182Afs*32 0.48 TCGA-85-6560-01 4 140393857 140393857 A T RAB33B Silent p.T89T 0.11 TCGA-85-6560-01 4 145567964 145567964 A G HHIP Missense_Mutation p.K46R 0.34 tolerated(1) benign(0.003) TCGA-85-6560-01 4 15443952 15443952 G C C1QTNF7 Silent p.P140P 0.40 TCGA-85-6560-01 4 156721210 156721210 A C GUCY1B3 Missense_Mutation p.K387Q 0.14 deleterious(0.04) possibly_damaging(0.859) TCGA-85-6560-01 4 16597389 16597389 G C LDB2 Silent p.S115S 0.11 TCGA-85-6560-01 4 177072999 177072999 A G WDR17 Missense_Mutation p.K805E 0.27 deleterious(0.01) benign(0.173) TCGA-85-6560-01 4 183959907 183959907 C T FAM92A1P2 RNA 0.17 TCGA-85-6560-01 4 185038118 185038118 A G ENPP6 Missense_Mutation p.M249T 0.23 tolerated(0.27) benign(0.018) TCGA-85-6560-01 4 187541653 187541653 T C FAT1 Silent p.S2029S 0.25 TCGA-85-6560-01 4 37831659 37831659 G C PGM2 Missense_Mutation p.G52A 0.43 tolerated(0.96) benign(0.003) TCGA-85-6560-01 4 37851992 37851992 G - PGM2 Frame_Shift_Del p.A534Lfs*11 0.32 TCGA-85-6560-01 4 39436041 39436041 A T KLB Missense_Mutation p.K346M 0.51 tolerated(0.06) possibly_damaging(0.811) TCGA-85-6560-01 4 47570958 47570958 T G ATP10D Silent p.P986P 0.59 TCGA-85-6560-01 4 55974019 55974019 C - KDR Frame_Shift_Del p.D433Ifs*11 0.41 TCGA-85-6560-01 4 69342005 69342005 C G TMPRSS11E Missense_Mutation p.L186V 0.48 tolerated(0.51) benign(0.001) TCGA-85-6560-01 4 71509533 71509533 C A ENAM Missense_Mutation p.P797Q 0.42 deleterious(0.03) probably_damaging(0.987) TCGA-85-6560-01 4 8294050 8294050 C A HTRA3 Nonsense_Mutation p.Y302* 0.10 TCGA-85-6560-01 4 8621111 8621111 C T CPZ Missense_Mutation p.R576C 0.42 deleterious(0) probably_damaging(0.999) TCGA-85-6560-01 5 10280435 10280435 A T CMBL 3'UTR 0.27 TCGA-85-6560-01 5 1034432 1034432 A G NKD2 Missense_Mutation p.K138R 0.25 tolerated(0.14) probably_damaging(0.917) TCGA-85-6560-01 5 111594984 111594984 C A EPB41L4A Missense_Mutation p.R246L 0.45 deleterious(0) possibly_damaging(0.885) TCGA-85-6560-01 5 112174043 112174043 G T APC Nonsense_Mutation p.E918* 0.42 TCGA-85-6560-01 5 112177057 112177057 G T APC Missense_Mutation p.Q1922H 0.47 benign(0.002) TCGA-85-6560-01 5 128863463 128863463 A G ADAMTS19 Missense_Mutation p.K364R 0.14 tolerated(0.21) benign(0.225) TCGA-85-6560-01 5 132556550 132556550 C T FSTL4 Missense_Mutation p.V450M 0.18 deleterious(0) probably_damaging(0.921) TCGA-85-6560-01 5 13866338 13866338 G A DNAH5 Silent p.I1369I 0.10 TCGA-85-6560-01 5 139189275 139189275 G T PSD2 Missense_Mutation p.G84W 0.60 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-85-6560-01 5 140176148 140176148 C - PCDHA2 Frame_Shift_Del p.Q534Rfs*2 0.39 TCGA-85-6560-01 5 149001624 149001624 A C ARHGEF37 Missense_Mutation p.Q445P 0.50 deleterious(0) probably_damaging(0.948) TCGA-85-6560-01 5 154169899 154169899 G A LARP1 Missense_Mutation p.A74T 0.11 tolerated(0.47) benign(0.001) TCGA-85-6560-01 5 158135176 158135176 G T EBF1 Missense_Mutation p.P519T 0.50 deleterious_low_confidence(0.04) benign(0.053) TCGA-85-6560-01 5 161112940 161112940 G T GABRA6 5'UTR 0.55 TCGA-85-6560-01 5 170725835 170725835 A G RANBP17 Silent p.E1080E 0.41 TCGA-85-6560-01 5 17353965 17353965 G C CTD-2139B15.2 5'Flank 0.12 TCGA-85-6560-01 5 176931447 176931447 A C DOK3 Missense_Mutation p.M343R 0.53 tolerated(0.6) benign(0.084) TCGA-85-6560-01 5 23527242 23527242 A T PRDM9 Missense_Mutation p.H682L 0.18 deleterious(0) probably_damaging(0.934) TCGA-85-6560-01 5 26988256 26988258 AAG - CDH9 In_Frame_Del p.F61del 0.16 TCGA-85-6560-01 5 34813695 34813695 A T RAI14 Missense_Mutation p.K264I 0.21 deleterious(0.02) probably_damaging(0.918) TCGA-85-6560-01 5 39390671 39390671 C T DAB2 Missense_Mutation p.E113K 0.48 deleterious(0) probably_damaging(0.915) TCGA-85-6560-01 5 45262720 45262720 C A HCN1 Missense_Mutation p.R659L 0.51 tolerated_low_confidence(0.42) benign(0) TCGA-85-6560-01 5 50689507 50689507 C T ISL1 3'UTR 0.17 TCGA-85-6560-01 5 79616577 79616586 AGAGAAAGAA - SPZ1 Frame_Shift_Del p.E182Tfs*8 0.29 TCGA-85-6560-01 5 82808109 82808109 G T VCAN Missense_Mutation p.R312S 0.56 deleterious(0) probably_damaging(0.995) TCGA-85-6560-01 5 83360526 83360526 T A EDIL3 Missense_Mutation p.E315D 0.38 deleterious(0.01) possibly_damaging(0.728) TCGA-85-6560-01 5 90016835 90016835 G A GPR98 Missense_Mutation p.S3236N 0.25 possibly_damaging(0.879) TCGA-85-6560-01 5 95224661 95224661 T A ELL2 Nonsense_Mutation p.R613* 0.51 TCGA-85-6560-01 6 118596642 118596642 G T SLC35F1 Missense_Mutation p.D220Y 0.16 deleterious(0) probably_damaging(0.994) TCGA-85-6560-01 6 131215519 131215519 T C EPB41L2 Silent p.L484L 0.27 TCGA-85-6560-01 6 132168977 132168977 G T ENPP1 Missense_Mutation p.C101F 0.34 tolerated(0.05) probably_damaging(0.999) TCGA-85-6560-01 6 132172345 132172345 C A ENPP1 Missense_Mutation p.A165D 0.20 deleterious(0.03) benign(0.219) TCGA-85-6560-01 6 132860118 132860118 G C TAAR9 Missense_Mutation p.K230N 0.45 tolerated(0.09) benign(0.022) TCGA-85-6560-01 6 133015200 133015200 C G VNN1 Missense_Mutation p.D155H 0.12 deleterious(0.01) possibly_damaging(0.868) TCGA-85-6560-01 6 137219304 137219304 C G PEX7 Missense_Mutation p.D276E 0.23 tolerated(0.29) benign(0.002) TCGA-85-6560-01 6 139204005 139204005 G T ECT2L Missense_Mutation p.E675D 0.16 tolerated(1) benign(0.045) TCGA-85-6560-01 6 146720571 146720571 T A GRM1 Missense_Mutation p.L799Q 0.15 deleterious(0) probably_damaging(0.996) TCGA-85-6560-01 6 149342530 149342530 C A UST Missense_Mutation p.L284I 0.35 tolerated(0.05) probably_damaging(0.928) TCGA-85-6560-01 6 152477094 152477094 C A SYNE1 Missense_Mutation p.D7977Y 0.29 probably_damaging(0.999) TCGA-85-6560-01 6 159166690 159166690 C T SYTL3 Missense_Mutation p.P345L 0.21 deleterious(0) probably_damaging(0.99) TCGA-85-6560-01 6 170112605 170112605 T A PHF10 Silent p.P278P 0.28 TCGA-85-6560-01 6 24134684 24134684 G T NRSN1 Missense_Mutation p.E43D 0.33 tolerated(0.15) possibly_damaging(0.671) TCGA-85-6560-01 6 26124828 26124828 G C HIST1H2AC Missense_Mutation p.S123T 0.20 tolerated_low_confidence(0.07) benign(0) TCGA-85-6560-01 6 26197191 26197191 G T HIST1H3D Silent p.A96A 0.09 TCGA-85-6560-01 6 26423264 26423264 G T BTN2A3P RNA 0.33 TCGA-85-6560-01 6 2680468 2680468 C A MYLK4 Nonsense_Mutation p.G249* 0.09 TCGA-85-6560-01 6 29141839 29141839 C A OR2J2 Missense_Mutation p.H143N 0.31 tolerated(0.31) benign(0.088) TCGA-85-6560-01 6 29572334 29572336 GTT - GABBR1 In_Frame_Del p.N883del 0.10 TCGA-85-6560-01 6 32036726 32036726 G C TNXB Silent p.V1925V 0.09 TCGA-85-6560-01 6 38691140 38691140 C T DNAH8 5'UTR 0.28 TCGA-85-6560-01 6 398903 398903 G T IRF4 Missense_Mutation p.S238I 0.47 deleterious(0.02) possibly_damaging(0.877) TCGA-85-6560-01 6 41653913 41653913 T C TFEB Missense_Mutation p.Q289R 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-85-6560-01 6 44137691 44137691 G C CAPN11 Missense_Mutation p.D130H 0.34 deleterious(0) probably_damaging(1) TCGA-85-6560-01 6 47682358 47682358 A G GPR115 Missense_Mutation p.I459M 0.04 deleterious(0) possibly_damaging(0.646) TCGA-85-6560-01 6 47847436 47847436 T C PTCHD4 Missense_Mutation p.I382V 0.12 tolerated(1) benign(0.003) TCGA-85-6560-01 6 49421411 49421411 C T MUT Missense_Mutation p.A324T 0.20 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-85-6560-01 6 50681719 50681719 T A TFAP2D 5'UTR 0.27 TCGA-85-6560-01 6 52616444 52616444 G T GSTA2 Missense_Mutation p.H159Q 0.17 tolerated(0.88) benign(0.018) TCGA-85-6560-01 6 55925686 55925686 T C COL21A1 Intron 0.21 TCGA-85-6560-01 6 57472362 57472362 G A PRIM2 3'UTR 0.07 TCGA-85-6560-01 6 69653721 69653721 G C BAI3 Splice_Site p.X344_splice 0.18 TCGA-85-6560-01 6 70992689 70992689 C T COL9A1 Intron 0.26 TCGA-85-6560-01 6 71004114 71004114 T A COL9A1 Missense_Mutation p.Q151L 0.43 unknown(0) TCGA-85-6560-01 6 73102433 73102433 C G RIMS1 Missense_Mutation p.D1513E 0.30 deleterious(0.04) benign(0.202) TCGA-85-6560-01 6 73843173 73843173 G A KCNQ5 Missense_Mutation p.R445H 0.15 deleterious(0) probably_damaging(0.985) TCGA-85-6560-01 6 75893688 75893688 A T COL12A1 Missense_Mutation p.S390R 0.18 benign(0.16) TCGA-85-6560-01 6 84910621 84910621 C A KIAA1009 Missense_Mutation p.V241L 0.37 deleterious(0.03) possibly_damaging(0.527) TCGA-85-6560-01 6 85457787 85457787 G T TBX18 Missense_Mutation p.H264N 0.15 deleterious(0) probably_damaging(0.997) TCGA-85-6560-01 6 85472268 85472268 G T TBX18 Missense_Mutation p.A164D 0.15 deleterious(0) probably_damaging(0.997) TCGA-85-6560-01 6 87725570 87725570 G T HTR1E Missense_Mutation p.C173F 0.39 deleterious(0) probably_damaging(1) TCGA-85-6560-01 7 100349951 100349951 C A ZAN Silent p.P741P 0.55 TCGA-85-6560-01 7 100459157 100459158 - A SLC12A9 Frame_Shift_Ins p.G497Rfs*4 0.32 TCGA-85-6560-01 7 100678368 100678368 T C MUC17 Missense_Mutation p.M1224T 0.20 unknown(0) TCGA-85-6560-01 7 1009036 1009036 C G COX19 Missense_Mutation p.G84A 0.22 tolerated(0.33) benign(0.08) TCGA-85-6560-01 7 102669193 102669193 G C FBXL13 Missense_Mutation p.T24S 0.38 tolerated(0.22) benign(0.002) TCGA-85-6560-01 7 103252103 103252103 C T RELN Silent p.L950L 0.19 TCGA-85-6560-01 7 107329636 107329636 T C SLC26A4 Silent p.D380D 0.29 TCGA-85-6560-01 7 110763776 110763776 T C LRRN3 Silent p.A316A 0.22 TCGA-85-6560-01 7 143792811 143792811 T A OR2A12 Missense_Mutation p.F204Y 0.23 deleterious(0.01) possibly_damaging(0.609) TCGA-85-6560-01 7 147815244 147815244 A T CNTNAP2 Silent p.P806P 0.20 TCGA-85-6560-01 7 150440023 150440023 A T GIMAP5 Missense_Mutation p.N266Y 0.31 deleterious(0) possibly_damaging(0.691) TCGA-85-6560-01 7 154561157 154561157 G T DPP6 Missense_Mutation p.W305L 0.15 deleterious(0) probably_damaging(1) TCGA-85-6560-01 7 2296508 2296508 C T SNX8 Splice_Site p.X428_splice 0.15 TCGA-85-6560-01 7 2998171 2998171 C G CARD11 5'UTR 0.28 TCGA-85-6560-01 7 43506060 43506060 G A HECW1 Missense_Mutation p.G936R 0.24 tolerated(0.06) benign(0.021) TCGA-85-6560-01 7 43547726 43547726 G T HECW1 Nonsense_Mutation p.E1288* 0.29 TCGA-85-6560-01 7 48314310 48314310 G T ABCA13 Nonsense_Mutation p.E1683* 0.20 TCGA-85-6560-01 7 4901033 4901033 T C PAPOLB Missense_Mutation p.K136E 0.24 tolerated(0.05) possibly_damaging(0.682) TCGA-85-6560-01 7 5348574 5348574 C T TNRC18 Missense_Mutation p.D2878N 0.30 unknown(0) TCGA-85-6560-01 7 6089541 6089541 A T EIF2AK1 Splice_Site p.X137_splice 0.19 TCGA-85-6560-01 7 64152319 64152319 G A ZNF107 5'UTR 0.22 TCGA-85-6560-01 7 66304888 66304888 C T GTF2IRD1P1 RNA 0.27 TCGA-85-6560-01 7 82583933 82583933 T A PCLO Silent p.S2112S 0.25 TCGA-85-6560-01 7 87607653 87607653 G T ADAM22 Missense_Mutation p.L83F 0.26 tolerated(0.57) benign(0.009) TCGA-85-6560-01 7 88964849 88964849 C A ZNF804B Missense_Mutation p.H851Q 0.20 tolerated(0.59) benign(0.046) TCGA-85-6560-01 8 100654301 100654301 G T VPS13B Missense_Mutation p.C1853F 0.27 tolerated(0.27) benign(0.024) TCGA-85-6560-01 8 103564205 103564205 C T ODF1 Nonsense_Mutation p.R84* 0.11 TCGA-85-6560-01 8 105361137 105361137 A G DCSTAMP Silent p.K119K 0.36 TCGA-85-6560-01 8 106814402 106814402 C A ZFPM2 Silent p.R698R 0.12 TCGA-85-6560-01 8 121644760 121644760 T A SNTB1 Missense_Mutation p.E307V 0.40 deleterious(0) possibly_damaging(0.546) TCGA-85-6560-01 8 134472094 134472094 C A ST3GAL1 Missense_Mutation p.K312N 0.33 possibly_damaging(0.701) TCGA-85-6560-01 8 139164107 139164107 G A FAM135B Missense_Mutation p.P871S 0.38 tolerated(0.55) benign(0.004) TCGA-85-6560-01 8 144461552 144461552 C T RHPN1 Silent p.L273L 0.20 TCGA-85-6560-01 8 144943140 144943140 C A EPPK1 Nonsense_Mutation p.G1428* 0.19 TCGA-85-6560-01 8 145732168 145732168 G A GPT Missense_Mutation p.G448S 0.28 deleterious(0) probably_damaging(1) TCGA-85-6560-01 8 22262248 22262248 G T SLC39A14 Missense_Mutation p.A9S 0.54 tolerated_low_confidence(0.21) benign(0.004) TCGA-85-6560-01 8 35606178 35606178 C G UNC5D Missense_Mutation p.H634D 0.36 deleterious(0) benign(0.167) TCGA-85-6560-01 8 38157060 38157060 T C WHSC1L1 Missense_Mutation p.Y887C 0.82 deleterious_low_confidence(0.01) possibly_damaging(0.867) TCGA-85-6560-01 8 41753903 41753903 C G ANK1 Silent p.R32R 0.20 TCGA-85-6560-01 8 41792162 41792162 G A KAT6A Silent p.I1192I 0.61 TCGA-85-6560-01 8 56698931 56698931 T C TGS1 Silent p.S158S 0.24 TCGA-85-6560-01 8 614632 614632 G T ERICH1 Missense_Mutation p.H435N 0.52 tolerated(0.13) benign(0.061) TCGA-85-6560-01 8 67047317 67047317 C A TRIM55 Missense_Mutation p.S145Y 0.20 deleterious(0) probably_damaging(0.994) TCGA-85-6560-01 8 67809057 67809057 T G MCMDC2 Missense_Mutation p.L497V 0.02 deleterious(0) possibly_damaging(0.771) TCGA-85-6560-01 8 69434115 69434115 C - C8orf34 Frame_Shift_Del p.L284* 0.14 TCGA-85-6560-01 8 77619806 77619806 C A ZFHX4 Silent p.I872I 0.47 TCGA-85-6560-01 8 77767580 77767580 C A ZFHX4 Missense_Mutation p.T2808K 0.27 probably_damaging(0.994) TCGA-85-6560-01 8 87423845 87423845 C T WWP1 Missense_Mutation p.A268V 0.10 tolerated(0.18) benign(0.046) TCGA-85-6560-01 8 95416346 95416346 T C RAD54B Silent p.K301K 0.50 TCGA-85-6560-01 8 98973703 98973703 C G MATN2 Missense_Mutation p.F301L 0.19 deleterious(0.01) benign(0.031) TCGA-85-6560-01 8 99168342 99168342 T A POP1 Missense_Mutation p.W708R 0.21 deleterious(0) probably_damaging(1) TCGA-85-6560-01 9 104432353 104432353 G A GRIN3A Missense_Mutation p.H781Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-85-6560-01 9 105768098 105768098 G C CYLC2 3'UTR 0.49 TCGA-85-6560-01 9 119976772 119976772 C T ASTN2 Missense_Mutation p.D294N 0.43 tolerated_low_confidence(0.06) unknown(0) TCGA-85-6560-01 9 130860954 130860954 A C SLC25A25 Intron 0.51 TCGA-85-6560-01 9 135277211 135277211 T G TTF1 Missense_Mutation p.K333T 0.17 deleterious_low_confidence(0.04) benign(0.111) TCGA-85-6560-01 9 135763718 135763718 C G C9orf9 Missense_Mutation p.A130G 0.28 deleterious(0) probably_damaging(0.998) TCGA-85-6560-01 9 139276418 139276418 C G SNAPC4 Missense_Mutation p.Q725H 0.35 tolerated(0.22) possibly_damaging(0.541) TCGA-85-6560-01 9 18504834 18504834 G T ADAMTSL1 Missense_Mutation p.R24M 0.46 deleterious(0) probably_damaging(0.99) TCGA-85-6560-01 9 19089443 19089443 T G HAUS6 Missense_Mutation p.D184A 0.22 deleterious(0) probably_damaging(0.911) TCGA-85-6560-01 9 27455301 27455301 G A MOB3B Missense_Mutation p.T83I 0.22 deleterious(0) possibly_damaging(0.618) TCGA-85-6560-01 9 35398283 35398283 G A UNC13B Missense_Mutation p.E1195K 0.47 tolerated(0.32) benign(0.354) TCGA-85-6560-01 9 72131330 72131330 T A APBA1 Missense_Mutation p.Q266L 0.38 deleterious_low_confidence(0.02) probably_damaging(0.985) TCGA-85-6560-01 9 74860170 74860170 G T GDA Silent p.G414G 0.45 TCGA-85-6560-01 9 77282715 77282715 G T RORB Missense_Mutation p.D337Y 0.55 deleterious(0) possibly_damaging(0.802) TCGA-85-6560-01 9 77416851 77416851 C A TRPM6 Missense_Mutation p.V658L 0.37 tolerated(0.14) benign(0.077) TCGA-85-6560-01 9 86584346 86584346 C T HNRNPK Silent p.Q457Q 0.50 TCGA-85-6560-01 X 106888416 106888416 C T PRPS1 Silent p.S180S 0.36 TCGA-85-6560-01 X 117809915 117809915 A G DOCK11 Missense_Mutation p.Y1739C 0.67 deleterious(0) probably_damaging(0.999) TCGA-85-6560-01 X 122537353 122537353 G T GRIA3 Missense_Mutation p.V426L 0.68 deleterious(0.04) benign(0.025) TCGA-85-6560-01 X 139865672 139865672 T C CDR1 3'UTR 0.76 TCGA-85-6560-01 X 147743938 147743938 C G AFF2 Missense_Mutation p.F230L 0.64 tolerated(0.11) probably_damaging(0.977) TCGA-85-6560-01 X 1554621 1554621 C T ASMTL Missense_Mutation p.V102M 0.27 deleterious(0) probably_damaging(0.971) TCGA-85-6560-01 X 21609200 21609200 G C CNKSR2 Missense_Mutation p.C573S 0.53 deleterious(0.03) probably_damaging(0.994) TCGA-85-6560-01 X 27999094 27999094 A T DCAF8L1 Missense_Mutation p.C120S 0.56 tolerated_low_confidence(0.43) benign(0.003) TCGA-85-6560-01 X 29973346 29973346 T A IL1RAPL1 Silent p.L500L 0.66 TCGA-85-6560-01 X 37965892 37965892 A G SYTL5 Missense_Mutation p.Y423C 0.05 deleterious(0) probably_damaging(0.999) TCGA-85-6560-01 X 38164003 38164003 C A RPGR Missense_Mutation p.Q273H 0.70 probably_damaging(1) TCGA-85-6560-01 X 53455274 53455274 G A RIBC1 Silent p.E81E 0.31 TCGA-85-6560-01 X 73042695 73042695 C T XIST RNA 0.60 TCGA-85-6560-01 X 91090520 91090520 G T PCDH11X Missense_Mutation p.G6V 0.58 deleterious(0.01) probably_damaging(0.917) TCGA-85-6560-01 Y 5605740 5605740 C T PCDH11Y Silent p.L1260L 0.37 TCGA-85-6561-01 10 101825049 101825049 C - CPN1 Frame_Shift_Del p.A219Rfs*91 0.10 TCGA-85-6561-01 10 118352021 118352021 G A PNLIPRP1 Missense_Mutation p.G100R 0.33 deleterious(0.03) benign(0.288) TCGA-85-6561-01 10 118352022 118352022 G T PNLIPRP1 Missense_Mutation p.G100V 0.33 deleterious(0) probably_damaging(0.911) TCGA-85-6561-01 10 15107628 15107628 G A OLAH Missense_Mutation p.E203K 0.11 deleterious(0) probably_damaging(0.993) TCGA-85-6561-01 10 15115133 15115133 G C OLAH Missense_Mutation p.G288R 0.10 deleterious(0) probably_damaging(1) TCGA-85-6561-01 10 16955880 16955880 C A CUBN Missense_Mutation p.R2488M 0.22 deleterious(0) benign(0.001) TCGA-85-6561-01 10 22002776 22002776 C T MLLT10 Missense_Mutation p.S592F 0.15 tolerated(0.06) probably_damaging(0.998) TCGA-85-6561-01 10 37438709 37438709 C A ANKRD30A Missense_Mutation p.A470D 0.15 deleterious(0.01) benign(0.066) TCGA-85-6561-01 10 55912957 55912957 C T PCDH15 Missense_Mutation p.G563R 0.11 tolerated(0.06) probably_damaging(1) TCGA-85-6561-01 10 55913005 55913005 C A PCDH15 Nonsense_Mutation p.E547* 0.21 TCGA-85-6561-01 10 69299393 69299393 T C CTNNA3 Silent p.T109T 0.15 TCGA-85-6561-01 10 69299394 69299394 G T CTNNA3 Missense_Mutation p.T109K 0.16 deleterious(0.01) benign(0.117) TCGA-85-6561-01 10 97423886 97423886 C T TCTN3 Missense_Mutation p.V588I 0.29 tolerated(0.46) benign(0.002) TCGA-85-6561-01 11 107288944 107288944 G A CWF19L2 Silent p.I501I 0.29 TCGA-85-6561-01 11 108044369 108044369 G A NPAT Missense_Mutation p.P448S 0.12 tolerated(0.25) benign(0.128) TCGA-85-6561-01 11 117647597 117647597 G A DSCAML1 Silent p.N200N 0.15 TCGA-85-6561-01 11 123756134 123756134 G A TMEM225 5'UTR 0.26 TCGA-85-6561-01 11 123887073 123887073 G T OR10G4 Missense_Mutation p.M264I 0.13 tolerated(0.05) benign(0.063) TCGA-85-6561-01 11 17554802 17554802 T C USH1C Missense_Mutation p.Q35R 0.15 deleterious(0.02) benign(0.006) TCGA-85-6561-01 11 22646316 22646316 C A FANCF Missense_Mutation p.W347C 0.09 deleterious(0) probably_damaging(1) TCGA-85-6561-01 11 2415351 2415351 G A CD81 Missense_Mutation p.A70T 0.14 deleterious(0.02) possibly_damaging(0.831) TCGA-85-6561-01 11 32997982 32997982 G T QSER1 Nonsense_Mutation p.G1724* 0.22 TCGA-85-6561-01 11 55136162 55136162 G C OR4A15 Missense_Mutation p.C268S 0.12 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-85-6561-01 11 55433378 55433378 G - OR4C6 Frame_Shift_Del p.V246Yfs*12 0.24 TCGA-85-6561-01 11 55659214 55659214 G A TRIM51 3'UTR 0.22 TCGA-85-6561-01 11 61404922 61404923 - ACAAACGAGTCCTGGCCTTGTCTGTGGAGACTGATGACAACTTCC RPLP0P2 RNA 0.10 TCGA-85-6561-01 11 6621950 6621950 C T RRP8 Missense_Mutation p.G368E 0.13 deleterious(0) probably_damaging(1) TCGA-85-6561-01 11 66616593 66616593 A - PC Frame_Shift_Del p.L1105Qfs*4 0.12 TCGA-85-6561-01 11 68822717 68822717 C A TPCN2 Missense_Mutation p.A109E 0.29 deleterious(0) possibly_damaging(0.644) TCGA-85-6561-01 11 72695219 72695219 C A FCHSD2 Missense_Mutation p.A207S 0.26 tolerated(0.07) benign(0.287) TCGA-85-6561-01 11 75442295 75442295 C G MOGAT2 Missense_Mutation p.F323L 0.06 deleterious(0.01) benign(0.314) TCGA-85-6561-01 11 88911731 88911731 G A TYR Missense_Mutation p.A204T 0.20 deleterious(0) probably_damaging(1) TCGA-85-6561-01 11 94230054 94230054 G T ANKRD49 Missense_Mutation p.L65F 0.18 tolerated(0.76) benign(0.002) TCGA-85-6561-01 12 1005356 1005356 G C WNK1 Missense_Mutation p.E1901D 0.12 deleterious(0.04) probably_damaging(0.997) TCGA-85-6561-01 12 104995722 104995722 C A CHST11 Silent p.R53R 0.13 TCGA-85-6561-01 12 109637324 109637324 C T ACACB Silent p.H915H 0.28 TCGA-85-6561-01 12 110890766 110890766 G A GPN3 3'UTR 0.29 TCGA-85-6561-01 12 21693481 21693481 G A GYS2 Missense_Mutation p.R558C 0.22 deleterious(0.02) benign(0.003) TCGA-85-6561-01 12 21788614 21788614 G A LDHB Silent p.F289F 0.24 TCGA-85-6561-01 12 39751147 39751147 A T KIF21A Silent p.R436R 0.10 TCGA-85-6561-01 12 41323798 41323798 C A CNTN1 Missense_Mutation p.P233T 0.19 tolerated(0.73) benign(0.002) TCGA-85-6561-01 12 41967717 41967717 T C PDZRN4 3'UTR 0.20 TCGA-85-6561-01 12 53009982 53009982 G T KRT73 Missense_Mutation p.S210R 0.25 deleterious(0.04) benign(0.023) TCGA-85-6561-01 12 55820954 55820954 C - OR6C76 Frame_Shift_Del p.H307Tfs*? 0.10 TCGA-85-6561-01 12 7550894 7550894 A C CD163L1 Missense_Mutation p.C565W 0.18 deleterious(0) probably_damaging(1) TCGA-85-6561-01 12 78513071 78513071 C T NAV3 Missense_Mutation p.S1032L 0.16 deleterious(0) benign(0.087) TCGA-85-6561-01 12 81111130 81111130 G T MYF5 Silent p.L96L 0.19 TCGA-85-6561-01 12 96288869 96288870 - A CCDC38 Frame_Shift_Ins p.L224Sfs*24 0.16 TCGA-85-6561-01 12 99076989 99076989 C T APAF1 Silent p.C705C 0.12 TCGA-85-6561-01 12 991098 991098 A C WNK1 Silent p.S1077S 0.19 TCGA-85-6561-01 13 23853520 23853520 G C SGCG Missense_Mutation p.Q136H 0.17 tolerated(0.76) benign(0.005) TCGA-85-6561-01 13 27333755 27333755 G A GPR12 Silent p.F70F 0.27 TCGA-85-6561-01 13 28624272 28624272 T C FLT3 Silent p.R234R 0.19 TCGA-85-6561-01 13 61986230 61986230 C A PCDH20 Missense_Mutation p.A668S 0.10 tolerated(0.39) benign(0.023) TCGA-85-6561-01 13 75923357 75923357 A T TBC1D4 Missense_Mutation p.C453S 0.13 deleterious(0.02) probably_damaging(0.998) TCGA-85-6561-01 14 100801207 100801207 G A WARS 3'UTR 0.18 TCGA-85-6561-01 14 102442115 102442115 A C DYNC1H1 Missense_Mutation p.H108P 0.13 benign(0) TCGA-85-6561-01 14 107034915 107034915 C A IGHV5-51 Missense_Mutation p.W55C 0.36 deleterious(0.02) benign(0.346) TCGA-85-6561-01 14 20389679 20389679 A C OR4K5 Missense_Mutation p.Y305S 0.38 deleterious(0.05) possibly_damaging(0.613) TCGA-85-6561-01 14 21931912 21931912 C A RAB2B Missense_Mutation p.R126L 0.40 deleterious(0.02) benign(0.317) TCGA-85-6561-01 14 29237481 29237481 G A FOXG1 Silent p.S332S 0.23 TCGA-85-6561-01 14 31085736 31085736 A G G2E3 Missense_Mutation p.H706R 0.36 deleterious_low_confidence(0) benign(0.134) TCGA-85-6561-01 14 47566206 47566206 G C MDGA2 Missense_Mutation p.S349C 0.19 tolerated(0.1) possibly_damaging(0.893) TCGA-85-6561-01 14 57686090 57686090 A T EXOC5 Silent p.I492I 0.38 TCGA-85-6561-01 14 63483580 63483580 C A KCNH5 Missense_Mutation p.A56S 0.08 deleterious(0.04) probably_damaging(0.998) TCGA-85-6561-01 14 76224173 76224173 G A TTLL5 Intron 0.18 TCGA-85-6561-01 14 88862514 88862515 - G SPATA7 Frame_Shift_Ins p.S69Cfs*29 0.28 TCGA-85-6561-01 14 89037427 89037427 G C ZC3H14 Splice_Site p.X65_splice 0.09 TCGA-85-6561-01 14 95029960 95029960 C A SERPINA4 Silent p.P47P 0.40 TCGA-85-6561-01 15 20496617 20496617 G A CHEK2P2 RNA 0.09 TCGA-85-6561-01 15 20496618 20496618 C G CHEK2P2 RNA 0.09 TCGA-85-6561-01 15 34147053 34147053 C T RYR3 Silent p.I4649I 0.17 TCGA-85-6561-01 15 41668024 41668024 A C NUSAP1 Missense_Mutation p.K374T 0.14 deleterious(0) possibly_damaging(0.506) TCGA-85-6561-01 15 41819710 41819710 C T RPAP1 Missense_Mutation p.E508K 0.24 tolerated(0.07) benign(0.01) TCGA-85-6561-01 15 63031711 63031711 C T TLN2 Silent p.L1284L 0.28 TCGA-85-6561-01 15 63069108 63069108 A T TLN2 Missense_Mutation p.K1838M 0.24 deleterious(0.02) benign(0.028) TCGA-85-6561-01 15 81589373 81589373 C A IL16 Silent p.T669T 0.09 TCGA-85-6561-01 15 89056198 89056198 C T DET1 Missense_Mutation p.R557Q 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-85-6561-01 16 10631855 10631855 G A EMP2 Silent p.F82F 0.10 TCGA-85-6561-01 16 20043299 20043299 C A GPR139 Missense_Mutation p.A274S 0.12 deleterious(0.03) probably_damaging(0.996) TCGA-85-6561-01 16 20693762 20693762 T A ACSM1 Missense_Mutation p.I143F 0.14 deleterious(0.01) possibly_damaging(0.468) TCGA-85-6561-01 16 30770363 30770363 C G C16orf93 Missense_Mutation p.E263Q 0.13 deleterious(0.02) possibly_damaging(0.474) TCGA-85-6561-01 16 30771025 30771025 C G C16orf93 Missense_Mutation p.E164Q 0.14 deleterious(0.04) probably_damaging(0.994) TCGA-85-6561-01 16 30991034 30991034 G C SETD1A Silent p.T1309T 0.15 TCGA-85-6561-01 16 3843455 3843455 G C CREBBP Missense_Mutation p.P383R 0.25 probably_damaging(1) TCGA-85-6561-01 16 75203869 75203869 G C ZFP1 Missense_Mutation p.Q287H 0.13 deleterious(0) probably_damaging(0.981) TCGA-85-6561-01 16 89785517 89785517 C G VPS9D1 Intron 0.24 TCGA-85-6561-01 17 10399845 10399845 C A MYH1 Nonsense_Mutation p.G1560* 0.41 TCGA-85-6561-01 17 10429093 10429093 C G MYH2 Missense_Mutation p.E1430Q 0.07 deleterious(0.01) probably_damaging(0.995) TCGA-85-6561-01 17 1582704 1582704 C G PRPF8 Missense_Mutation p.W430C 0.23 deleterious(0.03) probably_damaging(0.991) TCGA-85-6561-01 17 3352120 3352120 G A SPATA22 Missense_Mutation p.P218L 0.30 deleterious(0.01) possibly_damaging(0.65) TCGA-85-6561-01 17 36462506 36462506 G A MRPL45 Silent p.R123R 0.08 TCGA-85-6561-01 17 38191412 38191412 T C MED24 Missense_Mutation p.K173E 0.43 tolerated(0.63) benign(0.437) TCGA-85-6561-01 17 38711930 38711930 G T CCR7 Silent p.I67I 0.12 TCGA-85-6561-01 17 40963737 40963737 C A BECN1 Missense_Mutation p.D374Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-85-6561-01 17 57050227 57050227 G A PPM1E Missense_Mutation p.C384Y 0.19 deleterious(0.04) probably_damaging(0.996) TCGA-85-6561-01 17 685602 685602 C G RNMTL1 5'UTR 0.56 TCGA-85-6561-01 17 7187914 7187914 G A SLC2A4 Missense_Mutation p.G280S 0.39 tolerated(0.17) benign(0.045) TCGA-85-6561-01 17 73485732 73485737 CTCCAG - KIAA0195 In_Frame_Del p.L317_Q318del 0.09 TCGA-85-6561-01 17 7577090 7577090 C G TP53 Missense_Mutation p.R283P 0.48 deleterious(0.01) probably_damaging(0.978) TCGA-85-6561-01 18 23873404 23873404 C A TAF4B Missense_Mutation p.Q581K 0.11 deleterious(0.02) probably_damaging(0.995) TCGA-85-6561-01 18 3086126 3086126 A G MYOM1 Silent p.T1387T 0.13 TCGA-85-6561-01 18 333036 333036 G C COLEC12 Missense_Mutation p.L642V 0.21 deleterious(0.01) unknown(0) TCGA-85-6561-01 18 55336485 55336485 A C ATP8B1 Intron 0.22 TCGA-85-6561-01 18 59217418 59217418 G C CDH20 Missense_Mutation p.R619P 0.07 tolerated(0.2) benign(0.018) TCGA-85-6561-01 18 74622034 74622034 G T ZNF236 Silent p.V852V 0.26 TCGA-85-6561-01 18 8370999 8370999 G C PTPRM Missense_Mutation p.E1056Q 0.11 tolerated(0.47) benign(0.105) TCGA-85-6561-01 19 1056171 1056171 G - ABCA7 Frame_Shift_Del p.A1450Pfs*6 0.12 TCGA-85-6561-01 19 12461930 12461930 G A ZNF442 Nonsense_Mutation p.Q157* 0.18 TCGA-85-6561-01 19 17163697 17163697 C A HAUS8 Missense_Mutation p.Q289H 0.21 deleterious(0.01) probably_damaging(0.927) TCGA-85-6561-01 19 17373367 17373367 C T USHBP1 Silent p.Q212Q 0.33 TCGA-85-6561-01 19 19257870 19257870 T A MEF2B Silent p.P172P 0.25 TCGA-85-6561-01 19 22363137 22363137 G T ZNF676 Missense_Mutation p.S461Y 0.22 tolerated(0.19) benign(0.103) TCGA-85-6561-01 19 2276431 2276431 G C C19orf35 Missense_Mutation p.L224V 0.12 deleterious(0.05) possibly_damaging(0.781) TCGA-85-6561-01 19 22940353 22940353 C T ZNF99 Silent p.K786K 0.13 TCGA-85-6561-01 19 42734989 42734989 C G GSK3A Missense_Mutation p.W470S 0.29 tolerated_low_confidence(0.14) benign(0) TCGA-85-6561-01 19 42795796 42795796 C G CIC Missense_Mutation p.P929A 0.08 probably_damaging(0.956) TCGA-85-6561-01 19 44131919 44131919 C A CADM4 Nonsense_Mutation p.E30* 0.16 TCGA-85-6561-01 19 51480838 51480838 C T KLK7 Missense_Mutation p.C239Y 0.10 deleterious(0) probably_damaging(1) TCGA-85-6561-01 19 52327252 52327252 C T FPR3 Missense_Mutation p.S84L 0.10 tolerated(0.06) possibly_damaging(0.643) TCGA-85-6561-01 19 52327257 52327257 G T FPR3 Missense_Mutation p.A86S 0.29 tolerated(0.07) probably_damaging(0.927) TCGA-85-6561-01 19 55285042 55285042 C T KIR2DL1 Nonsense_Mutation p.Q110* 0.42 TCGA-85-6561-01 19 58238938 58238938 A G ZNF671 5'UTR 0.32 TCGA-85-6561-01 19 59061384 59061384 C A TRIM28 Silent p.T725T 0.12 TCGA-85-6561-01 19 734187 734187 G A PALM Silent p.T145T 0.25 TCGA-85-6561-01 1 103483389 103483389 T A COL11A1 Missense_Mutation p.D467V 0.26 probably_damaging(1) TCGA-85-6561-01 1 143912303 143912303 C A FAM72D 5'UTR 0.10 TCGA-85-6561-01 1 1463084 1463084 G T ATAD3A Silent p.L497L 0.11 TCGA-85-6561-01 1 155449247 155449247 T C ASH1L Silent p.L1138L 0.32 TCGA-85-6561-01 1 156261304 156261304 G A TMEM79 Missense_Mutation p.R367H 0.11 tolerated(0.09) probably_damaging(0.996) TCGA-85-6561-01 1 157666025 157666025 G C FCRL3 Missense_Mutation p.Q313E 0.19 tolerated(0.41) benign(0.01) TCGA-85-6561-01 1 159275863 159275863 T C FCER1A Silent p.D139D 0.12 TCGA-85-6561-01 1 161163114 161163114 G A ADAMTS4 Silent p.F600F 0.12 TCGA-85-6561-01 1 167382310 167382310 G A POU2F1 Missense_Mutation p.S650N 0.18 tolerated(0.17) probably_damaging(0.985) TCGA-85-6561-01 1 169529939 169529939 C T F5 Missense_Mutation p.E147K 0.17 tolerated(0.09) benign(0.27) TCGA-85-6561-01 1 175087722 175087722 C A TNN Silent p.V804V 0.19 TCGA-85-6561-01 1 175937541 175937541 G T RFWD2 Intron 0.19 TCGA-85-6561-01 1 179310419 179310420 - C SOAT1 Frame_Shift_Ins p.R253Pfs*31 0.22 TCGA-85-6561-01 1 186880486 186880486 C T PLA2G4A Missense_Mutation p.P175S 0.19 tolerated(0.74) benign(0.001) TCGA-85-6561-01 1 216052154 216052154 A T USH2A Missense_Mutation p.V2837D 0.16 probably_damaging(0.932) TCGA-85-6561-01 1 222801477 222801477 G A MIA3 Silent p.E305E 0.14 TCGA-85-6561-01 1 226016448 226016448 C G EPHX1 Silent p.L6L 0.15 TCGA-85-6561-01 1 240497236 240497236 A G FMN2 Missense_Mutation p.N1545S 0.08 benign(0.387) TCGA-85-6561-01 1 242042368 242042368 G T EXO1 Missense_Mutation p.W611L 0.11 deleterious(0) probably_damaging(0.976) TCGA-85-6561-01 1 243708878 243708878 A C AKT3 Missense_Mutation p.D395E 0.19 deleterious(0) possibly_damaging(0.568) TCGA-85-6561-01 1 247978481 247978481 G A OR14A16 Missense_Mutation p.A184V 0.19 deleterious(0.02) benign(0.101) TCGA-85-6561-01 1 28476668 28476668 C G PTAFR Missense_Mutation p.D289H 0.21 deleterious(0) probably_damaging(1) TCGA-85-6561-01 1 31194458 31194458 G - MATN1 Frame_Shift_Del p.R79Gfs*11 0.09 TCGA-85-6561-01 1 47904255 47904255 T C FOXD2 Silent p.L150L 0.21 TCGA-85-6561-01 1 76363685 76363685 G A MSH4 Missense_Mutation p.V817I 0.20 tolerated(0.26) benign(0.14) TCGA-85-6561-01 1 82409087 82409087 G A LPHN2 Missense_Mutation p.A278T 0.22 tolerated(0.06) probably_damaging(0.992) TCGA-85-6561-01 1 86900260 86900260 G C CLCA2 Missense_Mutation p.Q268H 0.16 deleterious(0.01) possibly_damaging(0.778) TCGA-85-6561-01 1 87025665 87025665 A T CLCA4 Missense_Mutation p.R70S 0.23 deleterious(0) possibly_damaging(0.612) TCGA-85-6561-01 1 94367168 94367168 C A GCLM Missense_Mutation p.D84Y 0.22 deleterious(0) probably_damaging(0.954) TCGA-85-6561-01 20 19956212 19956212 G T RIN2 Missense_Mutation p.V564F 0.21 tolerated(0.1) possibly_damaging(0.568) TCGA-85-6561-01 20 24523790 24523790 T C SYNDIG1 Silent p.A19A 0.17 TCGA-85-6561-01 20 2640344 2640344 C T IDH3B Splice_Site p.X337_splice 0.17 TCGA-85-6561-01 20 33999756 33999756 A G UQCC1 Missense_Mutation p.L4P 0.18 deleterious_low_confidence(0) possibly_damaging(0.756) TCGA-85-6561-01 20 44641162 44641162 G T MMP9 Missense_Mutation p.R424L 0.23 deleterious(0.02) benign(0.072) TCGA-85-6561-01 20 52645048 52645048 C G BCAS1 Missense_Mutation p.K202N 0.26 deleterious(0) probably_damaging(0.964) TCGA-85-6561-01 20 62571608 62571608 C G UCKL1 Missense_Mutation p.E488Q 0.10 tolerated(0.11) probably_damaging(0.977) TCGA-85-6561-01 21 11012918 11012918 T A TPTE Intron 0.13 TCGA-85-6561-01 21 19716354 19716354 C A TMPRSS15 Nonsense_Mutation p.G399* 0.20 TCGA-85-6561-01 21 32617825 32617825 C A TIAM1 Silent p.L521L 0.19 TCGA-85-6561-01 21 34132155 34132155 A C PAXBP1 Missense_Mutation p.F376V 0.14 deleterious(0.01) benign(0.147) TCGA-85-6561-01 21 45161591 45161591 C G PDXK Silent p.L62L 0.14 TCGA-85-6561-01 22 21288203 21288203 C T CRKL Silent p.L150L 0.22 TCGA-85-6561-01 22 30416160 30416160 A G MTMR3 Missense_Mutation p.R838G 0.21 tolerated_low_confidence(0.1) benign(0.06) TCGA-85-6561-01 22 30953382 30953382 C G GAL3ST1 5'UTR 0.10 TCGA-85-6561-01 22 45691481 45691481 C A UPK3A Missense_Mutation p.Q249K 0.16 tolerated(0.06) probably_damaging(0.998) TCGA-85-6561-01 22 50278129 50278129 G C ZBED4 Missense_Mutation p.K273N 0.05 tolerated(0.07) possibly_damaging(0.535) TCGA-85-6561-01 2 100029392 100029392 G A REV1 Missense_Mutation p.S658F 0.18 tolerated(0.65) benign(0.088) TCGA-85-6561-01 2 153532918 153532918 C G PRPF40A Splice_Site p.X344_splice 0.23 TCGA-85-6561-01 2 1667512 1667512 G T PXDN Silent p.R478R 0.19 TCGA-85-6561-01 2 1670117 1670117 G T PXDN Missense_Mutation p.P387Q 0.23 tolerated(0.49) possibly_damaging(0.664) TCGA-85-6561-01 2 170007453 170007453 G A LRP2 Missense_Mutation p.T4182I 0.17 probably_damaging(0.965) TCGA-85-6561-01 2 171509574 171509574 A T MYO3B Silent p.S1323S 0.14 TCGA-85-6561-01 2 179432907 179432907 A T TTN Silent p.A25984A 0.20 TCGA-85-6561-01 2 185801162 185801162 C G ZNF804A Missense_Mutation p.P347A 0.28 tolerated(0.05) benign(0.055) TCGA-85-6561-01 2 188361711 188361711 G A TFPI Silent p.F72F 0.10 TCGA-85-6561-01 2 196822072 196822072 T A DNAH7 Silent p.P997P 0.23 TCGA-85-6561-01 2 198950016 198950016 G T PLCL1 Missense_Mutation p.C592F 0.20 deleterious(0.05) probably_damaging(0.999) TCGA-85-6561-01 2 219000419 219000419 A G CXCR2 Missense_Mutation p.T299A 0.11 deleterious(0.01) probably_damaging(0.994) TCGA-85-6561-01 2 219870856 219870856 G C CCDC108 Missense_Mutation p.C1603W 0.12 deleterious(0.03) possibly_damaging(0.818) TCGA-85-6561-01 2 225422495 225422495 T C CUL3 Missense_Mutation p.N49D 0.08 tolerated(0.2) possibly_damaging(0.612) TCGA-85-6561-01 2 228118298 228118298 C A COL4A3 Missense_Mutation p.P237T 0.23 probably_damaging(0.998) TCGA-85-6561-01 2 3599829 3599829 C G RNASEH1 Missense_Mutation p.G105A 0.20 tolerated(0.69) benign(0.004) TCGA-85-6561-01 2 38178405 38178405 G C RMDN2 Missense_Mutation p.R16P 0.08 tolerated_low_confidence(1) benign(0.004) TCGA-85-6561-01 2 70520823 70520823 G A SNRPG 5'UTR 0.12 TCGA-85-6561-01 2 73457298 73457298 A T PRADC1 Silent p.P37P 0.09 TCGA-85-6561-01 2 79254970 79254970 G T REG3G Missense_Mutation p.S124I 0.14 deleterious(0) probably_damaging(0.969) TCGA-85-6561-01 2 80085138 80085138 G T CTNNA2 Splice_Site p.X100_splice 0.18 TCGA-85-6561-01 2 80096961 80096961 C A CTNNA2 Missense_Mutation p.A162D 0.18 tolerated(0.17) benign(0.001) TCGA-85-6561-01 2 85628769 85628769 G C CAPG Silent p.A78A 0.17 TCGA-85-6561-01 2 90199179 90199179 A G IGKV1D-12 Missense_Mutation p.N114D 0.20 tolerated(0.23) benign(0.004) TCGA-85-6561-01 2 9514948 9514948 G C ASAP2 Missense_Mutation p.A541P 0.18 tolerated(0.43) benign(0) TCGA-85-6561-01 3 100105095 100105095 C T TOMM70A Missense_Mutation p.E198K 0.17 deleterious(0) possibly_damaging(0.906) TCGA-85-6561-01 3 109049533 109049533 C G DPPA4 Missense_Mutation p.V173L 0.11 tolerated(0.26) benign(0.002) TCGA-85-6561-01 3 111304202 111304202 A T CD96 Missense_Mutation p.N278Y 0.12 tolerated(0.05) probably_damaging(0.913) TCGA-85-6561-01 3 113595041 113595041 C T GRAMD1C Silent p.F131F 0.13 TCGA-85-6561-01 3 133496080 133496080 C T TF Missense_Mutation p.S687L 0.16 deleterious(0) probably_damaging(1) TCGA-85-6561-01 3 137963964 137963964 G C ARMC8 Missense_Mutation p.R344P 0.14 deleterious(0.01) probably_damaging(0.95) TCGA-85-6561-01 3 1425083 1425083 G T CNTN6 Silent p.L836L 0.23 TCGA-85-6561-01 3 147113643 147113643 G A ZIC4 Silent p.H278H 0.12 TCGA-85-6561-01 3 148714590 148714590 G C GYG1 Missense_Mutation p.G127A 0.11 deleterious(0) probably_damaging(0.997) TCGA-85-6561-01 3 148901366 148901366 C T CP Missense_Mutation p.G771E 0.15 tolerated(1) benign(0.001) TCGA-85-6561-01 3 14974123 14974123 A T FGD5 Missense_Mutation p.T1413S 0.21 deleterious(0.05) probably_damaging(0.992) TCGA-85-6561-01 3 157146189 157146189 C A VEPH1 Missense_Mutation p.L206F 0.14 deleterious(0.01) benign(0.361) TCGA-85-6561-01 3 167272570 167272570 C A WDR49 Missense_Mutation p.G223V 0.16 deleterious(0) possibly_damaging(0.87) TCGA-85-6561-01 3 167747050 167747050 G A GOLIM4 Nonsense_Mutation p.Q492* 0.14 TCGA-85-6561-01 3 170198327 170198327 A T SLC7A14 Missense_Mutation p.F582I 0.20 tolerated(0.58) benign(0.024) TCGA-85-6561-01 3 172835271 172835271 C G SPATA16 Missense_Mutation p.R84P 0.12 deleterious(0.02) possibly_damaging(0.655) TCGA-85-6561-01 3 182553854 182553854 A G ATP11B Missense_Mutation p.D116G 0.14 deleterious(0) probably_damaging(1) TCGA-85-6561-01 3 193031871 193031871 G A ATP13A5 Missense_Mutation p.S757F 0.13 deleterious(0.04) probably_damaging(1) TCGA-85-6561-01 3 39141908 39141908 G A GORASP1 Missense_Mutation p.P218L 0.44 deleterious(0.04) benign(0.013) TCGA-85-6561-01 3 447294 447294 G A CHL1 Missense_Mutation p.S1192N 0.30 tolerated(1) benign(0.001) TCGA-85-6561-01 3 48658978 48658978 G A TMEM89 Missense_Mutation p.A71V 0.12 deleterious_low_confidence(0) benign(0.288) TCGA-85-6561-01 3 97983199 97983199 T A OR5H6 Nonsense_Mutation p.L24* 0.13 TCGA-85-6561-01 3 98241643 98241644 - AACCGCCGGGAACATGG CLDND1 Intron 0.15 TCGA-85-6561-01 3 98538223 98538223 C A DCBLD2 Missense_Mutation p.A304S 0.19 tolerated(0.52) benign(0.007) TCGA-85-6561-01 3 99514646 99514646 A C COL8A1 Missense_Mutation p.K634T 0.26 tolerated(0.31) possibly_damaging(0.467) TCGA-85-6561-01 4 104062989 104062989 C G CENPE Missense_Mutation p.R1794T 0.25 benign(0.357) TCGA-85-6561-01 4 108999527 108999527 T C LEF1 Missense_Mutation p.H286R 0.19 tolerated(0.51) probably_damaging(0.997) TCGA-85-6561-01 4 162307405 162307405 C A FSTL5 Missense_Mutation p.D680Y 0.18 deleterious(0) probably_damaging(0.996) TCGA-85-6561-01 4 1809431 1809431 C A FGFR3 3'UTR 0.12 TCGA-85-6561-01 4 44450527 44450527 T C KCTD8 Missense_Mutation p.D5G 0.17 deleterious_low_confidence(0) benign(0.102) TCGA-85-6561-01 4 47667239 47667239 G T CORIN Missense_Mutation p.P467T 0.17 tolerated(0.05) probably_damaging(0.999) TCGA-85-6561-01 4 52861072 52861072 C G LRRC66 Missense_Mutation p.D706H 0.10 deleterious(0) probably_damaging(0.99) TCGA-85-6561-01 4 55594022 55594022 T A KIT Missense_Mutation p.V603D 0.24 deleterious(0) probably_damaging(1) TCGA-85-6561-01 4 56878050 56878050 G A CEP135 Missense_Mutation p.E901K 0.13 deleterious(0.01) benign(0.057) TCGA-85-6561-01 4 73154561 73154561 T C ADAMTS3 Missense_Mutation p.T986A 0.17 tolerated(0.07) benign(0.142) TCGA-85-6561-01 4 73188783 73188783 C A ADAMTS3 Missense_Mutation p.G298V 0.15 deleterious(0) probably_damaging(0.98) TCGA-85-6561-01 4 74124090 74124090 C T ANKRD17 Missense_Mutation p.G99E 0.27 probably_damaging(0.931) TCGA-85-6561-01 4 89052213 89052213 C T ABCG2 Silent p.K177K 0.23 TCGA-85-6561-01 5 161281215 161281215 C T GABRA1 Silent p.F42F 0.28 TCGA-85-6561-01 5 161569272 161569272 G T GABRG2 Missense_Mutation p.W331L 0.22 deleterious(0) probably_damaging(0.998) TCGA-85-6561-01 5 24505300 24505300 A C CDH10 Missense_Mutation p.N438K 0.12 tolerated(0.07) benign(0.001) TCGA-85-6561-01 5 24505301 24505301 T A CDH10 Missense_Mutation p.N438I 0.12 deleterious(0.01) benign(0.084) TCGA-85-6561-01 5 33576330 33576330 G T ADAMTS12 Missense_Mutation p.N1267K 0.24 tolerated(0.67) benign(0.021) TCGA-85-6561-01 5 38942383 38942383 C G RICTOR 3'UTR 0.36 TCGA-85-6561-01 5 7832092 7832092 G T C5orf49 Silent p.R105R 0.26 TCGA-85-6561-01 5 80024667 80024667 T C MSH3 Intron 0.20 TCGA-85-6561-01 6 105609377 105609377 A T POPDC3 Silent p.V136V 0.15 TCGA-85-6561-01 6 108067950 108067950 G C SCML4 Missense_Mutation p.Q144E 0.16 deleterious(0.01) possibly_damaging(0.588) TCGA-85-6561-01 6 112471822 112471822 A T LAMA4 Missense_Mutation p.D688E 0.11 tolerated(0.93) benign(0.001) TCGA-85-6561-01 6 148865881 148865881 A T SASH1 Missense_Mutation p.D1092V 0.40 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-85-6561-01 6 151773617 151773617 G C C6orf211 5'UTR 0.08 TCGA-85-6561-01 6 151894542 151894542 C A CCDC170 Silent p.G336G 0.23 TCGA-85-6561-01 6 152527474 152527474 C - SYNE1 Frame_Shift_Del p.Q7617Nfs*7 0.15 TCGA-85-6561-01 6 163836265 163836265 A T QKI Missense_Mutation p.T14S 0.12 tolerated(0.58) benign(0.001) TCGA-85-6561-01 6 24423172 24423172 G A MRS2 Missense_Mutation p.R372K 0.26 tolerated(0.31) possibly_damaging(0.614) TCGA-85-6561-01 6 28472238 28472238 G T GPX6 Nonsense_Mutation p.S166* 0.20 TCGA-85-6561-01 6 29640398 29640398 C T ZFP57 Nonsense_Mutation p.W497* 0.17 TCGA-85-6561-01 6 30672302 30672302 G A MDC1 Missense_Mutation p.S1553F 0.16 tolerated(0.13) probably_damaging(0.966) TCGA-85-6561-01 6 38819390 38819390 T C DNAH8 Silent p.F1585F 0.18 TCGA-85-6561-01 6 38851097 38851097 G T DNAH8 Splice_Site p.X2451_splice 0.19 TCGA-85-6561-01 6 44328258 44328258 C A SPATS1 Silent p.V121V 0.25 TCGA-85-6561-01 6 51732720 51732720 C A PKHD1 Silent p.R2558R 0.19 TCGA-85-6561-01 6 562806 562806 T A EXOC2 Missense_Mutation p.D610V 0.14 deleterious(0) probably_damaging(0.987) TCGA-85-6561-01 6 56997877 56997877 T G ZNF451 Missense_Mutation p.S154R 0.23 tolerated(0.6) benign(0.002) TCGA-85-6561-01 6 63990650 63990650 G C LGSN Missense_Mutation p.S269C 0.20 tolerated(0.67) benign(0.001) TCGA-85-6561-01 6 69944957 69944957 C A BAI3 Missense_Mutation p.L881I 0.18 deleterious(0) probably_damaging(0.994) TCGA-85-6561-01 6 70894801 70894801 A G COL19A1 Silent p.G950G 0.07 TCGA-85-6561-01 6 76660389 76660389 C G IMPG1 Missense_Mutation p.E572Q 0.24 deleterious(0) probably_damaging(0.987) TCGA-85-6561-01 7 123593690 123593690 G A SPAM1 Silent p.Q22Q 0.29 TCGA-85-6561-01 7 128371185 128371185 G T FAM71F1 3'UTR 0.28 TCGA-85-6561-01 7 131848963 131848963 C T PLXNA4 Missense_Mutation p.E1480K 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-85-6561-01 7 141408871 141408871 C A WEE2 Missense_Mutation p.L105M 0.46 tolerated(0.14) possibly_damaging(0.472) TCGA-85-6561-01 7 146818203 146818203 T G CNTNAP2 Missense_Mutation p.M296R 0.21 tolerated(0.11) benign(0.01) TCGA-85-6561-01 7 18688187 18688187 A G HDAC9 Missense_Mutation p.N450D 0.23 deleterious(0.04) probably_damaging(0.909) TCGA-85-6561-01 7 22767125 22767125 G T IL6 Missense_Mutation p.A28S 0.19 tolerated(0.12) benign(0.028) TCGA-85-6561-01 7 27187272 27187272 C T HOXA6 Missense_Mutation p.D33N 0.30 deleterious(0) probably_damaging(0.956) TCGA-85-6561-01 7 30329465 30329465 G A ZNRF2 Intron 0.19 TCGA-85-6561-01 7 37951810 37951810 T A SFRP4 Missense_Mutation p.Q234H 0.40 tolerated(0.1) benign(0.134) TCGA-85-6561-01 7 38869888 38869888 C A VPS41 Missense_Mutation p.G96V 0.37 deleterious(0) probably_damaging(0.969) TCGA-85-6561-01 7 48431536 48431538 CCA - ABCA13 In_Frame_Del p.H3892del 0.08 TCGA-85-6561-01 7 53103589 53103589 C T POM121L12 Silent p.T75T 0.38 TCGA-85-6561-01 7 53103999 53103999 C A POM121L12 Missense_Mutation p.P212H 0.12 deleterious(0) probably_damaging(0.979) TCGA-85-6561-01 7 57528581 57528581 C A ZNF716 Missense_Mutation p.H138Q 0.35 tolerated(0.39) benign(0.081) TCGA-85-6561-01 7 72754819 72754819 C T FKBP6 Silent p.L256L 0.22 TCGA-85-6561-01 7 73008368 73008368 C T MLXIPL Intron 0.54 TCGA-85-6561-01 7 7628158 7628158 A G MIOS Silent p.R616R 0.17 TCGA-85-6561-01 7 87081012 87081012 C G ABCB4 Missense_Mutation p.R212T 0.23 tolerated(0.15) benign(0.009) TCGA-85-6561-01 7 88965209 88965209 C T ZNF804B Silent p.G971G 0.40 TCGA-85-6561-01 8 104897584 104897584 A G RIMS2 Missense_Mutation p.R253G 0.18 tolerated_low_confidence(0.11) benign(0.138) TCGA-85-6561-01 8 106814909 106814909 G A ZFPM2 Missense_Mutation p.E867K 0.25 deleterious(0) probably_damaging(0.998) TCGA-85-6561-01 8 110476645 110476645 A T PKHD1L1 Silent p.I2528I 0.12 TCGA-85-6561-01 8 113241017 113241017 A C CSMD3 Missense_Mutation p.F3644L 0.11 tolerated(0.87) benign(0.003) TCGA-85-6561-01 8 125989495 125989495 C G ZNF572 Missense_Mutation p.Q329E 0.06 tolerated(0.62) benign(0.005) TCGA-85-6561-01 8 146017419 146017419 C A RPL8 Silent p.V32V 0.31 TCGA-85-6561-01 8 22548495 22548495 G C EGR3 Missense_Mutation p.R219G 0.21 deleterious(0) probably_damaging(0.998) TCGA-85-6561-01 8 33356824 33356824 T C MAK16 3'UTR 0.19 TCGA-85-6561-01 8 39627087 39627087 T A ADAM2 Missense_Mutation p.S346C 0.23 deleterious(0) possibly_damaging(0.635) TCGA-85-6561-01 8 71495456 71495456 G A TRAM1 Missense_Mutation p.P332S 0.25 tolerated(0.41) benign(0.005) TCGA-85-6561-01 8 85441608 85441608 T G RALYL Missense_Mutation p.S31A 0.20 deleterious(0) benign(0.382) TCGA-85-6561-01 9 113703948 113703949 GG - LPAR1 Frame_Shift_Del p.P182Qfs*9 0.09 TCGA-85-6561-01 9 128001526 128001526 G A HSPA5 Silent p.F230F 0.28 TCGA-85-6561-01 9 131370516 131370516 C - SPTAN1 Frame_Shift_Del p.K1486Nfs*51 0.41 TCGA-85-6561-01 9 140911629 140911629 C G CACNA1B Intron 0.15 TCGA-85-6561-01 9 32630222 32630222 A T TAF1L Missense_Mutation p.F1786I 0.38 deleterious_low_confidence(0.02) probably_damaging(0.992) TCGA-85-6561-01 9 77442742 77442742 G A TRPM6 Missense_Mutation p.L265F 0.26 deleterious(0.02) probably_damaging(0.98) TCGA-85-6561-01 9 85619503 85619503 T A RASEF Splice_Site p.X372_splice 0.10 TCGA-85-6561-01 9 86588865 86588865 A C HNRNPK Silent p.T118T 0.25 TCGA-85-6561-01 9 96259804 96259804 G T FAM120A Missense_Mutation p.V286F 0.15 deleterious(0) probably_damaging(0.999) TCGA-85-6561-01 X 105183976 105183976 G T NRK Missense_Mutation p.A1305S 0.24 deleterious(0.02) possibly_damaging(0.879) TCGA-85-6561-01 X 107979494 107979494 T A IRS4 Silent p.A27A 0.47 TCGA-85-6561-01 X 127185050 127185050 G T ACTRT1 3'UTR 0.34 TCGA-85-6561-01 X 130217734 130217734 A T ARHGAP36 Missense_Mutation p.S116C 0.41 deleterious(0.01) benign(0.325) TCGA-85-6561-01 X 139866047 139866047 C A CDR1 Missense_Mutation p.R162I 0.31 deleterious(0.01) possibly_damaging(0.506) TCGA-85-6561-01 X 140993421 140993421 G C MAGEC1 Missense_Mutation p.Q77H 0.33 deleterious_low_confidence(0) benign(0.216) TCGA-85-6561-01 X 148627101 148627101 C G CXorf40A Intron 0.27 TCGA-85-6561-01 X 148690401 148690401 C A TMEM185A Missense_Mutation p.W112C 0.33 deleterious(0) probably_damaging(0.997) TCGA-85-6561-01 X 18616696 18616696 A C CDKL5 Missense_Mutation p.K314Q 0.19 deleterious_low_confidence(0) benign(0.403) TCGA-85-6561-01 X 19449693 19449693 C G MAP3K15 Silent p.L343L 0.20 TCGA-85-6561-01 X 22095759 22095759 C T PHEX Missense_Mutation p.S201F 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-85-6561-01 X 30577741 30577741 G C CXorf21 Silent p.L244L 0.21 TCGA-85-6561-01 X 30577970 30577970 G C CXorf21 Missense_Mutation p.S168C 0.30 deleterious(0.04) probably_damaging(0.931) TCGA-85-6561-01 X 30578451 30578451 T C CXorf21 Missense_Mutation p.S8G 0.52 tolerated(0.33) benign(0.088) TCGA-85-6561-01 X 54275131 54275131 T A WNK3 Missense_Mutation p.H1217L 0.38 deleterious(0.01) benign(0.272) TCGA-85-6561-01 X 65252402 65252402 G T VSIG4 Missense_Mutation p.A201E 0.48 deleterious(0.05) probably_damaging(0.993) TCGA-85-6561-01 X 74282203 74282203 T C ABCB7 Missense_Mutation p.Y633C 0.46 tolerated(0.24) probably_damaging(0.996) TCGA-85-6798-01 10 127724841 127724841 G T ADAM12 Silent p.L804L 0.41 TCGA-85-6798-01 10 15614287 15614287 G C ITGA8 Missense_Mutation p.L854V 0.05 deleterious(0) probably_damaging(0.999) TCGA-85-6798-01 10 44052585 44052585 C A ZNF239 Nonsense_Mutation p.G315* 0.21 TCGA-85-6798-01 10 64974553 64974553 T C JMJD1C Silent p.E458E 0.54 TCGA-85-6798-01 10 72637005 72637005 A C SGPL1 Missense_Mutation p.E540D 0.48 tolerated(0.46) benign(0.049) TCGA-85-6798-01 10 73558212 73558212 C T CDH23 Missense_Mutation p.P71S 0.31 tolerated(0.35) benign(0.407) TCGA-85-6798-01 10 73767419 73767419 G T CHST3 Silent p.L210L 0.57 TCGA-85-6798-01 10 76868922 76868922 G T DUSP13 5'UTR 0.45 TCGA-85-6798-01 11 108383000 108383000 C T EXPH5 Silent p.A1078A 0.20 TCGA-85-6798-01 11 113295265 113295265 A T DRD2 Missense_Mutation p.Y37N 0.16 deleterious(0) probably_damaging(0.973) TCGA-85-6798-01 11 123886342 123886342 C A OR10G4 Missense_Mutation p.L21M 0.30 deleterious(0.03) possibly_damaging(0.505) TCGA-85-6798-01 11 124413529 124413529 C T OR8B12 Missense_Mutation p.V8M 0.28 deleterious_low_confidence(0.02) benign(0.153) TCGA-85-6798-01 11 128355992 128355992 T A ETS1 Missense_Mutation p.E195D 0.12 tolerated(0.25) probably_damaging(0.97) TCGA-85-6798-01 11 1605806 1605806 C A KRTAP5-1 Missense_Mutation p.G225V 0.37 deleterious_low_confidence(0.03) unknown(0) TCGA-85-6798-01 11 17757725 17757725 G A KCNC1 Missense_Mutation p.R59H 0.41 deleterious(0) probably_damaging(1) TCGA-85-6798-01 11 26621176 26621176 G T ANO3 Missense_Mutation p.W584L 0.17 tolerated(1) benign(0.107) TCGA-85-6798-01 11 32421542 32421542 G A WT1 Silent p.C350C 0.23 TCGA-85-6798-01 11 5291131 5291131 C A HBE1 5'UTR 0.35 TCGA-85-6798-01 11 55371632 55371632 G T OR4C11 Missense_Mutation p.T73N 0.17 deleterious(0.01) benign(0.063) TCGA-85-6798-01 11 55587557 55587557 C A OR5D18 Missense_Mutation p.A151D 0.18 tolerated(0.06) benign(0.392) TCGA-85-6798-01 11 55735521 55735521 C A OR10AG1 Missense_Mutation p.W140L 0.06 deleterious(0.01) possibly_damaging(0.788) TCGA-85-6798-01 11 55927127 55927127 A C OR8K5 Missense_Mutation p.L223V 0.25 tolerated_low_confidence(1) benign(0.009) TCGA-85-6798-01 11 56020506 56020506 A T OR5T3 Silent p.G277G 0.14 TCGA-85-6798-01 11 57982777 57982777 C G OR1S1 Silent p.L187L 0.16 TCGA-85-6798-01 11 58294888 58294888 T C LPXN 3'UTR 0.29 TCGA-85-6798-01 11 62284652 62284652 G C AHNAK Nonsense_Mutation p.S5746* 0.23 TCGA-85-6798-01 11 62433273 62433273 T G METTL12 5'UTR 0.31 TCGA-85-6798-01 11 62996878 62996878 G T SLC22A25 Missense_Mutation p.L83M 0.20 tolerated(0.08) benign(0.19) TCGA-85-6798-01 11 64031545 64031545 G C PLCB3 Missense_Mutation p.Q871H 0.07 deleterious(0) possibly_damaging(0.903) TCGA-85-6798-01 11 67808739 67808739 A T TCIRG1 Translation_Start_Site p.M1? 0.21 deleterious(0) probably_damaging(0.989) TCGA-85-6798-01 11 7111167 7111167 T C RBMXL2 Silent p.D272D 0.12 TCGA-85-6798-01 11 72294555 72294555 A G PDE2A Missense_Mutation p.L552P 0.23 deleterious(0) probably_damaging(0.986) TCGA-85-6798-01 11 86157428 86157428 G A ME3 Silent p.P494P 0.19 TCGA-85-6798-01 11 89028418 89028418 C T TYR Silent p.L492L 0.29 TCGA-85-6798-01 11 92258029 92258029 T C FAT3 Silent p.D1174D 0.22 TCGA-85-6798-01 12 100811889 100811889 T C SLC17A8 Silent p.S460S 0.27 TCGA-85-6798-01 12 102061557 102061557 T C MYBPC1 Missense_Mutation p.F795L 0.29 tolerated(0.38) possibly_damaging(0.582) TCGA-85-6798-01 12 10568282 10568282 A G KLRC3 Silent p.I233I 0.20 TCGA-85-6798-01 12 107090098 107090098 C G RFX4 Missense_Mutation p.P245R 0.13 deleterious(0) probably_damaging(0.999) TCGA-85-6798-01 12 113553836 113553836 C T RASAL1 Missense_Mutation p.R251Q 0.14 tolerated(0.44) probably_damaging(0.949) TCGA-85-6798-01 12 117013748 117013748 A G MAP1LC3B2 Translation_Start_Site p.M1? 0.34 deleterious_low_confidence(0.01) benign(0.101) TCGA-85-6798-01 12 117710344 117710344 A T NOS1 Missense_Mutation p.L562Q 0.26 deleterious(0) probably_damaging(0.962) TCGA-85-6798-01 12 121666827 121666827 G T P2RX4 Missense_Mutation p.C286F 0.47 deleterious(0) probably_damaging(1) TCGA-85-6798-01 12 124957556 124957556 C T NCOR2 Missense_Mutation p.R178H 0.22 unknown(0) TCGA-85-6798-01 12 132635914 132635914 G T NOC4L Splice_Site p.X358_splice 0.43 TCGA-85-6798-01 12 14993948 14993948 C G ART4 Missense_Mutation p.R95T 0.16 tolerated(0.4) benign(0.053) TCGA-85-6798-01 12 27152526 27152526 C A TM7SF3 Missense_Mutation p.W110C 0.36 deleterious(0.04) benign(0.06) TCGA-85-6798-01 12 27152527 27152527 C T TM7SF3 Nonsense_Mutation p.W110* 0.40 TCGA-85-6798-01 12 27152567 27152567 G C TM7SF3 Missense_Mutation p.L97V 0.44 tolerated(0.1) probably_damaging(0.996) TCGA-85-6798-01 12 58145032 58145032 C T CDK4 Silent p.L104L 0.17 TCGA-85-6798-01 12 7522097 7522097 C T CD163L1 Missense_Mutation p.A1299T 0.17 deleterious(0.04) probably_damaging(0.99) TCGA-85-6798-01 12 78571093 78571093 C G NAV3 Missense_Mutation p.A1766G 0.15 tolerated(0.47) benign(0.346) TCGA-85-6798-01 12 85279312 85279312 T A SLC6A15 Missense_Mutation p.N159I 0.31 deleterious(0) probably_damaging(0.998) TCGA-85-6798-01 12 99640605 99640605 T A ANKS1B Missense_Mutation p.K598N 0.15 tolerated(0.13) benign(0.002) TCGA-85-6798-01 13 114150140 114150140 G T TMCO3 Missense_Mutation p.V82L 0.69 tolerated(0.31) benign(0.001) TCGA-85-6798-01 13 114307207 114307207 A C ATP4B Missense_Mutation p.F179C 0.10 deleterious(0.01) possibly_damaging(0.907) TCGA-85-6798-01 13 114322088 114322088 G T GRK1 Silent p.G129G 0.75 TCGA-85-6798-01 13 23906161 23906161 C G SACS Missense_Mutation p.G3952R 0.17 probably_damaging(0.999) TCGA-85-6798-01 13 23907370 23907370 C G SACS Missense_Mutation p.E3549Q 0.16 probably_damaging(0.99) TCGA-85-6798-01 13 25171540 25171540 A T RP11-556N21.1 RNA 0.31 TCGA-85-6798-01 13 26956969 26956969 G T CDK8 Missense_Mutation p.V159F 0.39 deleterious(0) benign(0.411) TCGA-85-6798-01 13 27333208 27333208 G T GPR12 Missense_Mutation p.L253M 0.22 deleterious(0) probably_damaging(1) TCGA-85-6798-01 13 28631484 28631484 T C FLT3 Missense_Mutation p.N162D 0.57 tolerated(0.64) benign(0.001) TCGA-85-6798-01 13 33686984 33686984 A C STARD13 Missense_Mutation p.L789R 0.50 deleterious(0) probably_damaging(1) TCGA-85-6798-01 13 35782930 35782930 C A NBEA Silent p.G1820G 0.58 TCGA-85-6798-01 13 49037960 49037961 - CT RB1 Frame_Shift_Ins p.V735Lfs*10 0.36 TCGA-85-6798-01 14 106733279 106733279 A G IGHV1-24 Silent p.P72P 0.41 TCGA-85-6798-01 14 20502556 20502556 T A OR4K13 Missense_Mutation p.D121V 0.19 deleterious(0) probably_damaging(1) TCGA-85-6798-01 14 20666088 20666088 C T OR11G2 Silent p.I198I 0.21 TCGA-85-6798-01 14 20848214 20848214 T C TEP1 Splice_Site p.X1668_splice 0.39 TCGA-85-6798-01 14 51098971 51098971 G A ATL1 Missense_Mutation p.A531T 0.32 tolerated(0.12) benign(0.004) TCGA-85-6798-01 15 102346286 102346286 C A OR4F6 Silent p.R122R 0.14 TCGA-85-6798-01 15 25322265 25322265 C T SNORD116-12 RNA 0.18 TCGA-85-6798-01 15 25472321 25472321 G T SNORD115-31 RNA 0.16 TCGA-85-6798-01 15 28431744 28431744 T A HERC2 Missense_Mutation p.D2935V 0.60 benign(0.391) TCGA-85-6798-01 15 30012012 30012012 G A TJP1 Missense_Mutation p.P991L 0.16 tolerated_low_confidence(0.09) benign(0.054) TCGA-85-6798-01 15 35273905 35273905 C T ZNF770 Missense_Mutation p.M577I 0.55 tolerated(0.4) benign(0) TCGA-85-6798-01 15 40655926 40655926 C A DISP2 Missense_Mutation p.P74T 0.48 tolerated_low_confidence(0.09) benign(0.014) TCGA-85-6798-01 15 52527889 52527889 T C MYO5C Silent p.Q980Q 0.56 TCGA-85-6798-01 15 59752178 59752178 C A FAM81A Missense_Mutation p.P23T 0.50 deleterious(0) probably_damaging(0.999) TCGA-85-6798-01 15 64966113 64966113 A G ZNF609 Splice_Site p.X354_splice 0.13 TCGA-85-6798-01 15 75304163 75304163 G A SCAMP5 5'UTR 0.42 TCGA-85-6798-01 15 83447627 83447627 G A FSD2 Silent p.F334F 0.15 TCGA-85-6798-01 16 15457813 15457813 T A NPIPA5 Missense_Mutation p.Q252H 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-85-6798-01 16 15501889 15501889 G A MPV17L Missense_Mutation p.G171S 0.16 tolerated(0.07) possibly_damaging(0.685) TCGA-85-6798-01 16 18860597 18860597 G C SMG1 Silent p.L1855L 0.55 TCGA-85-6798-01 16 24043512 24043512 G T PRKCB Missense_Mutation p.C115F 0.41 deleterious(0) probably_damaging(0.994) TCGA-85-6798-01 16 24196449 24196449 C T PRKCB Silent p.P517P 0.16 TCGA-85-6798-01 16 4247889 4247889 A T SRL Missense_Mutation p.V96E 0.64 deleterious(0) probably_damaging(0.988) TCGA-85-6798-01 16 49669883 49669883 C T ZNF423 Silent p.L1060L 0.63 TCGA-85-6798-01 16 57507931 57507931 C T DOK4 Missense_Mutation p.G207E 0.56 deleterious(0) probably_damaging(1) TCGA-85-6798-01 16 66919299 66919299 A C PDP2 Missense_Mutation p.E371A 0.58 tolerated(0.5) benign(0.155) TCGA-85-6798-01 16 80667117 80667117 G A CDYL2 Silent p.N211N 0.24 TCGA-85-6798-01 16 84940208 84940208 G T CRISPLD2 Missense_Mutation p.R485L 0.35 tolerated(0.13) benign(0.086) TCGA-85-6798-01 17 21201786 21201786 C A MAP2K3 Missense_Mutation p.N37K 0.16 tolerated(0.23) benign(0.01) TCGA-85-6798-01 17 27002126 27002126 A T SUPT6H Missense_Mutation p.M162L 0.18 tolerated(0.3) unknown(0) TCGA-85-6798-01 17 29261232 29261232 G A ADAP2 Missense_Mutation p.G143R 0.15 deleterious(0.01) probably_damaging(1) TCGA-85-6798-01 17 39034519 39034519 C T KRT20 Silent p.L339L 0.14 TCGA-85-6798-01 17 3947551 3947551 G T ZZEF1 Missense_Mutation p.P2045T 0.23 tolerated_low_confidence(0.14) benign(0) TCGA-85-6798-01 17 4575875 4575875 G C PELP1 Nonsense_Mutation p.S804* 0.19 TCGA-85-6798-01 17 45917654 45917654 C A SCRN2 Missense_Mutation p.G87C 0.37 deleterious(0) probably_damaging(1) TCGA-85-6798-01 17 46670846 46670846 C T HOXB5 Missense_Mutation p.G67R 0.50 deleterious(0.02) benign(0.092) TCGA-85-6798-01 17 4936647 4936647 A C SLC52A1 Missense_Mutation p.L348R 0.65 deleterious(0.01) probably_damaging(0.985) TCGA-85-6798-01 17 54554984 54554984 G T ANKFN1 Missense_Mutation p.V640L 0.11 tolerated(0.08) benign(0.32) TCGA-85-6798-01 17 5462958 5462958 C A NLRP1 Missense_Mutation p.R353I 0.20 deleterious(0) possibly_damaging(0.803) TCGA-85-6798-01 17 56247080 56247080 G A OR4D2 Missense_Mutation p.E22K 0.19 tolerated(0.08) benign(0.013) TCGA-85-6798-01 17 56557352 56557352 A G HSF5 Missense_Mutation p.V276A 0.57 deleterious(0.01) benign(0.437) TCGA-85-6798-01 17 6331752 6331752 G A AIPL1 Silent p.H117H 0.31 TCGA-85-6798-01 17 66521063 66521063 G C PRKAR1A Silent p.G171G 0.17 TCGA-85-6798-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.59 deleterious(0) probably_damaging(1) TCGA-85-6798-01 17 78111251 78111251 G C EIF4A3 Nonsense_Mutation p.S306* 0.29 TCGA-85-6798-01 17 80320459 80320459 C G TEX19 Missense_Mutation p.L145V 0.19 deleterious(0.01) probably_damaging(0.994) TCGA-85-6798-01 18 10485498 10485498 C T APCDD1 Missense_Mutation p.R272W 0.41 deleterious(0) probably_damaging(0.982) TCGA-85-6798-01 18 14105379 14105379 C T ZNF519 Missense_Mutation p.R387K 0.08 tolerated(0.33) benign(0.004) TCGA-85-6798-01 18 34191968 34191968 G T FHOD3 Silent p.L289L 0.23 TCGA-85-6798-01 18 39550380 39550380 G T PIK3C3 Missense_Mutation p.S164I 0.21 tolerated(0.19) benign(0.024) TCGA-85-6798-01 18 51025738 51025738 C A DCC Missense_Mutation p.S1323R 0.13 tolerated(0.13) benign(0.112) TCGA-85-6798-01 18 59972769 59972769 A G KIAA1468 3'UTR 0.10 TCGA-85-6798-01 19 10106287 10106287 G A COL5A3 Nonsense_Mutation p.R514* 0.22 TCGA-85-6798-01 19 1257320 1257320 C T MIDN 3'UTR 0.22 TCGA-85-6798-01 19 13325368 13325368 A G CACNA1A Missense_Mutation p.I1929T 0.14 benign(0.291) TCGA-85-6798-01 19 1390899 1390899 G T NDUFS7 Silent p.L86L 0.41 TCGA-85-6798-01 19 15795879 15795879 C T CYP4F12 Silent p.G329G 0.34 TCGA-85-6798-01 19 1615403 1615403 G A TCF3 Missense_Mutation p.A568V 0.38 deleterious(0) probably_damaging(0.999) TCGA-85-6798-01 19 17922516 17922516 T A B3GNT3 Missense_Mutation p.V235E 0.23 deleterious(0) probably_damaging(0.954) TCGA-85-6798-01 19 17922517 17922517 G A B3GNT3 Silent p.V235V 0.23 TCGA-85-6798-01 19 19638848 19638848 G T NDUFA13 Missense_Mutation p.W116C 0.28 deleterious(0) probably_damaging(1) TCGA-85-6798-01 19 21607752 21607752 T C ZNF493 Missense_Mutation p.I764T 0.12 tolerated(1) benign(0.056) TCGA-85-6798-01 19 36255819 36255819 C T C19orf55 Missense_Mutation p.A203V 0.33 deleterious(0.01) possibly_damaging(0.814) TCGA-85-6798-01 19 3736185 3736185 G A TJP3 Missense_Mutation p.V393I 0.39 tolerated(0.06) benign(0.099) TCGA-85-6798-01 19 38861215 38861215 G T CATSPERG Missense_Mutation p.C1088F 0.13 deleterious(0.02) possibly_damaging(0.506) TCGA-85-6798-01 19 52004805 52004805 G C SIGLEC12 Silent p.G61G 0.31 TCGA-85-6798-01 19 53879073 53879073 G C ZNF525 Missense_Mutation p.W22C 0.15 deleterious(0) probably_damaging(0.998) TCGA-85-6798-01 19 549885 549885 G T GZMM 3'UTR 0.31 TCGA-85-6798-01 19 549886 549886 G T GZMM 3'UTR 0.31 TCGA-85-6798-01 19 55142950 55142950 G T LILRB1 Splice_Site p.X24_splice 0.18 TCGA-85-6798-01 19 55222144 55222144 C T AC098784.2 3'Flank 0.17 TCGA-85-6798-01 19 56443373 56443373 C G NLRP13 Missense_Mutation p.R102T 0.26 tolerated(0.14) benign(0.01) TCGA-85-6798-01 19 603706 603706 C A HCN2 Silent p.T265T 0.34 TCGA-85-6798-01 19 7762423 7762423 C A FCER2 Missense_Mutation p.Q81H 0.39 deleterious(0.01) probably_damaging(0.969) TCGA-85-6798-01 19 9047484 9047484 G C MUC16 Missense_Mutation p.P11383A 0.35 benign(0.001) TCGA-85-6798-01 19 9063163 9063163 C A MUC16 Missense_Mutation p.D8095Y 0.29 unknown(0) TCGA-85-6798-01 1 100933617 100933617 C G CDC14A Missense_Mutation p.S315C 0.20 deleterious(0) probably_damaging(0.993) TCGA-85-6798-01 1 104113341 104113341 C G AMY2B Intron 0.38 TCGA-85-6798-01 1 12978710 12978710 T A PRAMEF7 Silent p.S272S 0.38 TCGA-85-6798-01 1 153637738 153637738 T C ILF2 Missense_Mutation p.T179A 0.26 deleterious(0) possibly_damaging(0.843) TCGA-85-6798-01 1 156639607 156639607 A T NES Missense_Mutation p.L1458Q 0.42 deleterious(0.05) possibly_damaging(0.653) TCGA-85-6798-01 1 158813128 158813128 G A MNDA Missense_Mutation p.V109M 0.27 tolerated(0.16) benign(0.288) TCGA-85-6798-01 1 159161793 159161793 G A CADM3 Silent p.V86V 0.33 TCGA-85-6798-01 1 16097017 16097017 G C FBLIM1 Missense_Mutation p.A219P 0.27 deleterious(0.02) probably_damaging(0.991) TCGA-85-6798-01 1 161882142 161882142 A G ATF6 Silent p.S592S 0.20 TCGA-85-6798-01 1 17420158 17420158 C T PADI2 Missense_Mutation p.E145K 0.21 tolerated(0.37) benign(0.008) TCGA-85-6798-01 1 177133703 177133703 A T ASTN1 Missense_Mutation p.L37H 0.40 deleterious_low_confidence(0) possibly_damaging(0.8) TCGA-85-6798-01 1 180165774 180165774 G A QSOX1 Missense_Mutation p.A616T 0.15 tolerated(0.56) benign(0.002) TCGA-85-6798-01 1 183083704 183083704 G T LAMC1 Missense_Mutation p.D354Y 0.29 deleterious(0) probably_damaging(1) TCGA-85-6798-01 1 198711151 198711151 T G PTPRC Missense_Mutation p.C853G 0.32 deleterious(0) probably_damaging(1) TCGA-85-6798-01 1 200534694 200534694 C A KIF14 Missense_Mutation p.Q1255H 0.26 tolerated(0.06) benign(0.021) TCGA-85-6798-01 1 20097841 20097841 T A TMCO4 Missense_Mutation p.K105M 0.15 deleterious(0.03) possibly_damaging(0.868) TCGA-85-6798-01 1 206239538 206239538 G A C1orf186 Silent p.D120D 0.31 TCGA-85-6798-01 1 20992736 20992736 A T KIF17 Missense_Mutation p.I961N 0.26 deleterious(0) probably_damaging(0.999) TCGA-85-6798-01 1 209963932 209963932 C G IRF6 Missense_Mutation p.W323S 0.20 deleterious(0) probably_damaging(1) TCGA-85-6798-01 1 214818577 214818577 G T CENPF Missense_Mutation p.K1888N 0.25 benign(0.004) TCGA-85-6798-01 1 225965634 225965634 T G SRP9 5'UTR 0.15 TCGA-85-6798-01 1 233394890 233394890 G A PCNXL2 Missense_Mutation p.R240C 0.11 tolerated_low_confidence(0.14) benign(0.003) TCGA-85-6798-01 1 233482322 233482322 G A MLK4 Missense_Mutation p.E314K 0.30 deleterious(0) probably_damaging(1) TCGA-85-6798-01 1 236925794 236925794 C G ACTN2 Missense_Mutation p.L854V 0.18 deleterious(0) probably_damaging(0.996) TCGA-85-6798-01 1 237057738 237057738 T C MTR Missense_Mutation p.Y1096H 0.24 tolerated(0.08) possibly_damaging(0.632) TCGA-85-6798-01 1 237729961 237729961 T A RYR2 Missense_Mutation p.F1103L 0.32 probably_damaging(0.997) TCGA-85-6798-01 1 237791310 237791310 G A RYR2 Missense_Mutation p.G2124S 0.43 possibly_damaging(0.838) TCGA-85-6798-01 1 2420812 2420812 G T PLCH2 Missense_Mutation p.V441L 0.29 tolerated(0.17) benign(0.42) TCGA-85-6798-01 1 247752203 247752203 T C OR2G2 Missense_Mutation p.I181T 0.28 deleterious(0.02) possibly_damaging(0.67) TCGA-85-6798-01 1 247875460 247875460 A G OR6F1 Missense_Mutation p.F200L 0.31 tolerated(0.13) benign(0.174) TCGA-85-6798-01 1 247875713 247875713 C A OR6F1 Silent p.L115L 0.24 TCGA-85-6798-01 1 248487473 248487473 G T OR2M7 Missense_Mutation p.T133N 0.18 deleterious(0.01) benign(0.14) TCGA-85-6798-01 1 248637565 248637565 C T OR2T3 Missense_Mutation p.A305V 0.13 deleterious(0) possibly_damaging(0.527) TCGA-85-6798-01 1 32124104 32124104 T A COL16A1 Silent p.G1335G 0.56 TCGA-85-6798-01 1 33234287 33234287 C T KIAA1522 Missense_Mutation p.S166F 0.37 deleterious(0.03) unknown(0) TCGA-85-6798-01 1 34082528 34082528 G C CSMD2 Missense_Mutation p.N1958K 0.47 deleterious(0) probably_damaging(0.967) TCGA-85-6798-01 1 34164470 34164470 C G CSMD2 Missense_Mutation p.A1230P 0.17 deleterious(0.02) probably_damaging(0.972) TCGA-85-6798-01 1 35835977 35835977 A G ZMYM4 Silent p.P310P 0.21 TCGA-85-6798-01 1 36307350 36307350 G C AGO4 Missense_Mutation p.R725T 0.16 tolerated(0.14) possibly_damaging(0.665) TCGA-85-6798-01 1 36372555 36372555 C T AGO1 Missense_Mutation p.R473W 0.09 tolerated(0.07) probably_damaging(0.986) TCGA-85-6798-01 1 3754068 3754068 C G CEP104 Missense_Mutation p.D303H 0.36 deleterious(0.01) benign(0.034) TCGA-85-6798-01 1 41984150 41984150 G C HIVEP3 Missense_Mutation p.T1798S 0.48 probably_damaging(0.993) TCGA-85-6798-01 1 47753315 47753315 G C STIL Missense_Mutation p.D347E 0.19 tolerated(0.19) benign(0.127) TCGA-85-6798-01 1 60314027 60314027 G C HOOK1 Missense_Mutation p.E324Q 0.20 deleterious(0.01) probably_damaging(0.987) TCGA-85-6798-01 1 8390428 8390428 C T SLC45A1 Missense_Mutation p.P292L 0.33 deleterious(0.01) probably_damaging(0.909) TCGA-85-6798-01 1 91816376 91816376 T A HFM1 Missense_Mutation p.I709F 0.17 deleterious(0.01) probably_damaging(0.988) TCGA-85-6798-01 1 91851221 91851221 G T HFM1 Missense_Mutation p.A222E 0.24 tolerated_low_confidence(0.29) benign(0.221) TCGA-85-6798-01 20 11903702 11903702 G T BTBD3 Missense_Mutation p.L319F 0.26 deleterious(0.02) possibly_damaging(0.905) TCGA-85-6798-01 20 34240372 34240372 A G RBM12 3'UTR 0.29 TCGA-85-6798-01 20 3681992 3681992 T C SIGLEC1 Missense_Mutation p.N509D 0.31 tolerated(0.37) benign(0.044) TCGA-85-6798-01 20 41400158 41400158 C G PTPRT Missense_Mutation p.V201L 0.15 deleterious(0.04) benign(0.107) TCGA-85-6798-01 20 44512226 44512226 C G ZSWIM1 Missense_Mutation p.A332G 0.19 tolerated(0.4) benign(0.081) TCGA-85-6798-01 20 44673662 44673662 A G SLC12A5 Silent p.P507P 0.15 TCGA-85-6798-01 20 47990873 47990873 G - KCNB1 Frame_Shift_Del p.I409Sfs*40 0.23 TCGA-85-6798-01 20 49575994 49575994 C A MOCS3 Silent p.A205A 0.27 TCGA-85-6798-01 20 50140565 50140565 T C NFATC2 Missense_Mutation p.Y72C 0.17 tolerated(0.2) benign(0.005) TCGA-85-6798-01 20 5933068 5933068 A G MCM8 Splice_Site p.X50_splice 0.39 TCGA-85-6798-01 21 19632528 19632528 A G CHODL Missense_Mutation p.T187A 0.22 tolerated(0.15) benign(0.059) TCGA-85-6798-01 21 40568689 40568689 C G BRWD1 Missense_Mutation p.R2102S 0.22 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-85-6798-01 21 43529709 43529709 C T UMODL1 Silent p.C519C 0.22 TCGA-85-6798-01 21 45994064 45994064 A T KRTAP10-4 Silent p.S143S 0.12 TCGA-85-6798-01 21 45994615 45994615 G T KRTAP10-4 Missense_Mutation p.S327I 0.24 deleterious(0.01) unknown(0) TCGA-85-6798-01 22 22899281 22899281 C T PRAME 5'UTR 0.21 TCGA-85-6798-01 22 32828388 32828388 G A BPIFC Missense_Mutation p.T374I 0.40 deleterious(0) probably_damaging(0.991) TCGA-85-6798-01 22 36700145 36700145 G C MYH9 Missense_Mutation p.F762L 0.17 probably_damaging(0.999) TCGA-85-6798-01 22 38323541 38323541 C T MICALL1 Missense_Mutation p.P530L 0.14 tolerated(0.06) possibly_damaging(0.676) TCGA-85-6798-01 22 42605851 42605851 C T TCF20 Missense_Mutation p.V1821I 0.19 benign(0) TCGA-85-6798-01 2 102782587 102782587 A T IL1R1 Silent p.L167L 0.36 TCGA-85-6798-01 2 118586994 118586994 C T DDX18 Nonsense_Mutation p.Q608* 0.17 TCGA-85-6798-01 2 121050838 121050838 T A RALB 3'UTR 0.14 TCGA-85-6798-01 2 125261953 125261953 G - CNTNAP5 Frame_Shift_Del p.G382Afs*10 0.21 TCGA-85-6798-01 2 135779342 135779342 A G MAP3K19 Silent p.D27D 0.11 TCGA-85-6798-01 2 149216401 149216402 GG - MBD5 Frame_Shift_Del p.W25Sfs*26 0.22 TCGA-85-6798-01 2 152486160 152486160 T C NEB Missense_Mutation p.T3242A 0.33 benign(0.018) TCGA-85-6798-01 2 165795958 165795958 A T SLC38A11 Splice_Site p.X123_splice 0.45 TCGA-85-6798-01 2 170557953 170557953 A G PHOSPHO2 Missense_Mutation p.I158V 0.24 tolerated(0.32) benign(0.001) TCGA-85-6798-01 2 179397169 179397169 C G TTN Missense_Mutation p.D34725H 0.09 TCGA-85-6798-01 2 1843040 1843040 G T MYT1L Missense_Mutation p.D985E 0.21 tolerated(1) probably_damaging(0.97) TCGA-85-6798-01 2 187703793 187703793 A T ZSWIM2 Missense_Mutation p.H129Q 0.23 tolerated(0.5) benign(0.004) TCGA-85-6798-01 2 192226998 192226998 A G MYO1B Silent p.K222K 0.38 TCGA-85-6798-01 2 197860131 197860131 T C ANKRD44 Missense_Mutation p.I910V 0.15 tolerated(0.16) benign(0.03) TCGA-85-6798-01 2 200790044 200790044 G C C2orf69 Missense_Mutation p.S198T 0.20 tolerated(0.36) benign(0.002) TCGA-85-6798-01 2 200826597 200826597 T A C2orf47 Missense_Mutation p.V248D 0.20 deleterious(0) probably_damaging(0.983) TCGA-85-6798-01 2 219231771 219231771 G A C2orf62 Silent p.V260V 0.62 TCGA-85-6798-01 2 24484044 24484044 T A ITSN2 Silent p.T871T 0.41 TCGA-85-6798-01 2 44445670 44445670 T A PPM1B Missense_Mutation p.S376R 0.27 tolerated(0.28) benign(0.015) TCGA-85-6798-01 2 71744168 71744168 G A DYSF Missense_Mutation p.R334Q 0.37 deleterious(0.01) benign(0.063) TCGA-85-6798-01 2 90154108 90154108 G A IGKV3D-15 Silent p.R65R 0.33 TCGA-85-6798-01 2 90229087 90229087 A T IGKV1D-42 Missense_Mutation p.Q8L 0.31 deleterious(0.01) benign(0.018) TCGA-85-6798-01 2 90458633 90458633 T C CH17-132F21.1 Silent p.F103F 0.04 TCGA-85-6798-01 2 95756158 95756158 C T MRPS5 Silent p.Q347Q 0.28 TCGA-85-6798-01 2 99220639 99220639 G A COA5 Missense_Mutation p.R39W 0.11 deleterious(0) possibly_damaging(0.901) TCGA-85-6798-01 3 111710435 111710435 G A ABHD10 Missense_Mutation p.R263Q 0.28 tolerated(0.14) benign(0.055) TCGA-85-6798-01 3 112738546 112738546 G C C3orf17 5'UTR 0.44 TCGA-85-6798-01 3 118906718 118906718 T G UPK1B Missense_Mutation p.Y56D 0.43 deleterious(0) possibly_damaging(0.841) TCGA-85-6798-01 3 122411380 122411380 A G PARP14 Silent p.Q196Q 0.33 TCGA-85-6798-01 3 126270944 126270944 G T C3orf22 Silent p.P37P 0.17 TCGA-85-6798-01 3 13661268 13661268 G T FBLN2 Missense_Mutation p.G698C 0.36 deleterious(0) probably_damaging(0.94) TCGA-85-6798-01 3 151165801 151165801 C G IGSF10 Missense_Mutation p.L656F 0.21 deleterious(0.01) probably_damaging(0.989) TCGA-85-6798-01 3 160141357 160141357 G C SMC4 Missense_Mutation p.D722H 0.14 deleterious(0) probably_damaging(0.956) TCGA-85-6798-01 3 160786909 160786909 G A PPM1L Silent p.V349V 0.15 TCGA-85-6798-01 3 161146997 161146997 G A RP11-3P17.5 Intron 0.14 TCGA-85-6798-01 3 164905638 164905638 C G SLITRK3 3'UTR 0.19 TCGA-85-6798-01 3 165548341 165548341 G C BCHE Missense_Mutation p.L161V 0.72 deleterious(0) probably_damaging(0.988) TCGA-85-6798-01 3 169824712 169824712 A C PHC3 Missense_Mutation p.S792R 0.05 deleterious(0.05) benign(0.093) TCGA-85-6798-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.55 deleterious(0.04) probably_damaging(0.96) TCGA-85-6798-01 3 42781263 42781263 C G CCDC13 Missense_Mutation p.E343Q 0.53 deleterious(0.01) possibly_damaging(0.736) TCGA-85-6798-01 3 57280124 57280124 A G APPL1 Silent p.E165E 0.32 TCGA-85-6798-01 3 58899423 58899423 C A C3orf67 Intron 0.43 TCGA-85-6798-01 3 58899424 58899424 C A C3orf67 Intron 0.43 TCGA-85-6798-01 3 69111045 69111045 T C UBA3 Missense_Mutation p.H277R 0.52 deleterious(0) probably_damaging(0.999) TCGA-85-6798-01 3 93617339 93617339 C T PROS1 Missense_Mutation p.D268N 0.10 tolerated(0.11) benign(0.242) TCGA-85-6798-01 3 93617405 93617405 C T PROS1 Missense_Mutation p.E246K 0.06 deleterious(0) probably_damaging(0.94) TCGA-85-6798-01 3 93617408 93617408 C T PROS1 Missense_Mutation p.D245N 0.06 tolerated(0.08) possibly_damaging(0.589) TCGA-85-6798-01 3 98251719 98251719 A T GPR15 Missense_Mutation p.Q281L 0.26 tolerated(0.07) possibly_damaging(0.719) TCGA-85-6798-01 4 155507743 155507743 C T FGA Missense_Mutation p.G280R 0.46 deleterious(0.01) benign(0) TCGA-85-6798-01 4 164246486 164246487 - T NPY1R Frame_Shift_Ins p.I375Nfs*5 0.19 TCGA-85-6798-01 4 177081209 177081209 G T WDR17 Missense_Mutation p.D888Y 0.40 deleterious(0.02) probably_damaging(0.926) TCGA-85-6798-01 4 47954656 47954656 A T CNGA1 Missense_Mutation p.N90K 0.39 tolerated_low_confidence(0.17) benign(0.013) TCGA-85-6798-01 4 83348624 83348624 A G HNRNPDL Silent p.L290L 0.50 TCGA-85-6798-01 4 8607892 8607892 T A CPZ Missense_Mutation p.Y296N 0.21 deleterious(0.03) possibly_damaging(0.797) TCGA-85-6798-01 4 86220 86220 A G Z95704.2 RNA 0.11 TCGA-85-6798-01 5 102502899 102502899 G C PPIP5K2 Missense_Mutation p.S646T 0.55 tolerated(0.05) possibly_damaging(0.642) TCGA-85-6798-01 5 107197342 107197342 C T FBXL17 3'UTR 0.54 TCGA-85-6798-01 5 114466316 114466316 C T TRIM36 Missense_Mutation p.R602H 0.33 tolerated(1) benign(0.002) TCGA-85-6798-01 5 139219614 139219614 G A PSD2 Silent p.E657E 0.25 TCGA-85-6798-01 5 140503711 140503711 C T PCDHB4 Missense_Mutation p.R711W 0.44 deleterious_low_confidence(0.01) benign(0.12) TCGA-85-6798-01 5 140563066 140563066 T C PCDHB16 Missense_Mutation p.M311T 0.17 tolerated_low_confidence(1) benign(0) TCGA-85-6798-01 5 156476077 156476077 G T HAVCR1 Silent p.T251T 0.47 TCGA-85-6798-01 5 1879923 1879923 G C IRX4 Missense_Mutation p.T144R 0.40 deleterious(0) possibly_damaging(0.882) TCGA-85-6798-01 5 21783604 21783604 C A CDH12 Splice_Site p.X419_splice 0.11 TCGA-85-6798-01 5 21975358 21975358 G A CDH12 Missense_Mutation p.P123L 0.06 deleterious(0.04) possibly_damaging(0.903) TCGA-85-6798-01 5 31305347 31305347 C T CDH6 Missense_Mutation p.P356S 0.51 tolerated(0.16) benign(0.002) TCGA-85-6798-01 5 35048055 35048055 G C AGXT2 5'UTR 0.14 TCGA-85-6798-01 5 35800111 35800111 C A SPEF2 Silent p.P1624P 0.18 TCGA-85-6798-01 5 41058238 41058238 C G MROH2B Missense_Mutation p.G228A 0.43 deleterious(0) benign(0.009) TCGA-85-6798-01 5 72383907 72383907 C T FCHO2 Missense_Mutation p.A808V 0.47 tolerated(0.28) probably_damaging(0.999) TCGA-85-6798-01 5 82373233 82373233 G T TMEM167A 5'UTR 0.53 TCGA-85-6798-01 5 89923067 89923067 A T GPR98 Missense_Mutation p.S238C 0.20 benign(0.354) TCGA-85-6798-01 6 10430480 10430480 G C LINC00518 RNA 0.53 TCGA-85-6798-01 6 110778156 110778156 C G SLC22A16 Missense_Mutation p.A40P 0.58 deleterious(0) probably_damaging(0.953) TCGA-85-6798-01 6 131958534 131958534 A T ENPP3 Missense_Mutation p.T4S 0.10 tolerated_low_confidence(0.72) benign(0) TCGA-85-6798-01 6 132967127 132967127 G C TAAR1 Missense_Mutation p.H6D 0.38 deleterious(0.05) benign(0.028) TCGA-85-6798-01 6 133045984 133045984 G T VNN3 3'UTR 0.27 TCGA-85-6798-01 6 13365008 13365008 G A GFOD1 Silent p.A380A 0.19 TCGA-85-6798-01 6 152201861 152201861 G T ESR1 Missense_Mutation p.A239S 0.48 tolerated(0.06) probably_damaging(1) TCGA-85-6798-01 6 152717982 152717982 T C SYNE1 Missense_Mutation p.E2495G 0.14 benign(0.027) TCGA-85-6798-01 6 152765588 152765588 A T SYNE1 Silent p.T1265T 0.12 TCGA-85-6798-01 6 25969559 25969559 C T TRIM38 Missense_Mutation p.L140F 0.09 tolerated(0.23) benign(0.32) TCGA-85-6798-01 6 28971749 28971749 T C ZNF311 5'UTR 0.11 TCGA-85-6798-01 6 29407856 29407856 C T OR10C1 Missense_Mutation p.L22F 0.14 tolerated(0.09) benign(0.002) TCGA-85-6798-01 6 33219411 33219411 G A VPS52 Missense_Mutation p.R637W 0.17 deleterious(0) possibly_damaging(0.822) TCGA-85-6798-01 6 36177643 36177643 A T BRPF3 Missense_Mutation p.Q606L 0.53 deleterious(0) probably_damaging(0.995) TCGA-85-6798-01 6 43306780 43306780 G T ZNF318 Silent p.A1652A 0.46 TCGA-85-6798-01 6 53516905 53516905 C A KLHL31 Missense_Mutation p.G466C 0.37 deleterious(0) probably_damaging(1) TCGA-85-6798-01 6 56346959 56346959 C A DST Silent p.S4517S 0.38 TCGA-85-6798-01 6 64394816 64394816 C T PHF3 Missense_Mutation p.P398L 0.43 tolerated_low_confidence(0.19) benign(0.002) TCGA-85-6798-01 6 66115108 66115108 C T EYS Missense_Mutation p.V339I 0.14 tolerated(0.4) benign(0) TCGA-85-6798-01 6 7584443 7584443 C A DSP Nonsense_Mutation p.Y2316* 0.16 TCGA-85-6798-01 6 7880501 7880501 T G BMP6 Silent p.L489L 0.17 TCGA-85-6798-01 6 82933863 82933863 C A IBTK Missense_Mutation p.V289F 0.42 deleterious(0) probably_damaging(0.993) TCGA-85-6798-01 6 84569471 84569471 C G CYB5R4 5'UTR 0.50 TCGA-85-6798-01 6 99374688 99374688 C T FBXL4 Silent p.V59V 0.14 TCGA-85-6798-01 7 103126846 103126846 A C RELN Missense_Mutation p.F3261V 0.30 tolerated(0.5) benign(0.006) TCGA-85-6798-01 7 113517800 113517800 T G PPP1R3A Missense_Mutation p.K1116T 0.14 deleterious(0.02) probably_damaging(0.92) TCGA-85-6798-01 7 113519624 113519624 T C PPP1R3A Missense_Mutation p.E508G 0.40 tolerated(0.08) benign(0.002) TCGA-85-6798-01 7 129662198 129662198 C T ZC3HC1 Silent p.A467A 0.06 TCGA-85-6798-01 7 141740631 141740631 C A MGAM Missense_Mutation p.T828K 0.11 tolerated(0.09) benign(0.035) TCGA-85-6798-01 7 142749914 142749914 C G OR6V1 Silent p.L159L 0.21 TCGA-85-6798-01 7 146997304 146997304 A G CNTNAP2 Missense_Mutation p.I474V 0.37 tolerated(1) benign(0.005) TCGA-85-6798-01 7 154863106 154863106 G - HTR5A Frame_Shift_Del p.A167Hfs*28 0.20 TCGA-85-6798-01 7 21695557 21695557 G T DNAH11 Missense_Mutation p.K1689N 0.17 benign(0.005) TCGA-85-6798-01 7 2473204 2473204 G T CHST12 Silent p.P310P 0.31 TCGA-85-6798-01 7 26404220 26404220 G T SNX10 Missense_Mutation p.W59C 0.17 deleterious(0) probably_damaging(0.989) TCGA-85-6798-01 7 31614161 31614161 G A CCDC129 Missense_Mutation p.E161K 0.08 deleterious(0) probably_damaging(0.999) TCGA-85-6798-01 7 38299759 38299759 A T TRGC1 Missense_Mutation p.V151D 0.09 deleterious(0) possibly_damaging(0.894) TCGA-85-6798-01 7 41739850 41739850 G T INHBA Silent p.A41A 0.07 TCGA-85-6798-01 7 63809419 63809419 G C ZNF736 Missense_Mutation p.G393A 0.55 deleterious(0.02) possibly_damaging(0.813) TCGA-85-6798-01 7 65447028 65447028 C G GUSB Missense_Mutation p.R48P 0.50 deleterious(0.04) probably_damaging(0.985) TCGA-85-6798-01 7 72419593 72419593 G A POM121 3'UTR 0.31 TCGA-85-6798-01 7 87913411 87913411 C A STEAP4 Silent p.L58L 0.15 TCGA-85-6798-01 7 91843974 91843974 T C KRIT1 Missense_Mutation p.I561V 0.23 deleterious(0.03) possibly_damaging(0.71) TCGA-85-6798-01 7 92764245 92764245 G T SAMD9L Missense_Mutation p.A347D 0.43 deleterious(0) benign(0.248) TCGA-85-6798-01 7 94028392 94028392 A G COL1A2 Missense_Mutation p.E43G 0.11 unknown(0) TCGA-85-6798-01 8 100168900 100168900 C T VPS13B Missense_Mutation p.H713Y 0.67 tolerated(0.05) benign(0.012) TCGA-85-6798-01 8 113241090 113241090 G C CSMD3 Nonsense_Mutation p.S3620* 0.54 TCGA-85-6798-01 8 125499050 125499050 G A RNF139 Missense_Mutation p.R387H 0.14 tolerated(0.44) benign(0.001) TCGA-85-6798-01 8 139163666 139163667 - T FAM135B Frame_Shift_Ins p.E1018Rfs*69 0.37 TCGA-85-6798-01 8 142432434 142432434 A G PTP4A3 Missense_Mutation p.T32A 0.43 tolerated(0.19) benign(0) TCGA-85-6798-01 8 3265572 3265572 G C CSMD1 Silent p.V640V 0.24 TCGA-85-6798-01 8 38839219 38839219 C G HTRA4 Missense_Mutation p.I349M 0.60 deleterious(0) probably_damaging(0.997) TCGA-85-6798-01 8 52287259 52287259 C G PXDNL Missense_Mutation p.W1197S 0.62 deleterious(0) probably_damaging(0.944) TCGA-85-6798-01 8 62289213 62289213 C A CLVS1 Missense_Mutation p.L169I 0.55 deleterious(0.01) possibly_damaging(0.85) TCGA-85-6798-01 8 67488277 67488277 T C MYBL1 Missense_Mutation p.T479A 0.60 deleterious(0.01) possibly_damaging(0.881) TCGA-85-6798-01 8 71060557 71060557 A G NCOA2 Silent p.P852P 0.09 TCGA-85-6798-01 8 72983982 72983982 G T TRPA1 Missense_Mutation p.L78I 0.66 tolerated(0.24) benign(0.064) TCGA-85-6798-01 8 92261957 92261957 G C SLC26A7 Missense_Mutation p.Q26H 0.21 tolerated(0.2) benign(0.413) TCGA-85-6798-01 9 112899055 112899055 G T PALM2-AKAP2 Nonsense_Mutation p.E411* 0.10 TCGA-85-6798-01 9 34497185 34497185 G T DNAI1 Missense_Mutation p.D297Y 0.09 deleterious(0.03) possibly_damaging(0.8) TCGA-85-6798-01 9 79936196 79936196 A G VPS13A Missense_Mutation p.I1843V 0.59 tolerated(0.1) benign(0.02) TCGA-85-6798-01 9 94841765 94841765 G A SPTLC1 Intron 0.38 TCGA-85-6798-01 X 10106754 10106754 C A WWC3 Nonsense_Mutation p.C954* 0.38 TCGA-85-6798-01 X 34148838 34148838 C G FAM47A Missense_Mutation p.E520Q 0.42 deleterious(0.04) possibly_damaging(0.607) TCGA-85-6798-01 X 44703567 44703567 C G DUSP21 Missense_Mutation p.F63L 0.31 tolerated(0.47) benign(0.006) TCGA-85-6798-01 X 65408355 65408355 G C HEPH Missense_Mutation p.E314D 0.38 tolerated(0.08) possibly_damaging(0.496) TCGA-85-6798-01 X 70836788 70836788 G T CXCR3 Silent p.L225L 0.27 TCGA-85-7696-01 10 104156761 104156761 C T NFKB2 Missense_Mutation p.S115L 0.26 tolerated(0.07) benign(0.192) TCGA-85-7696-01 10 105172903 105172903 C G PDCD11 Missense_Mutation p.R337G 0.05 tolerated(0.27) benign(0.168) TCGA-85-7696-01 10 118897543 118897543 C T VAX1 Missense_Mutation p.D9N 0.07 deleterious_low_confidence(0) unknown(0) TCGA-85-7696-01 10 121086043 121086043 G T GRK5 Missense_Mutation p.R23L 0.21 tolerated(0.05) probably_damaging(0.932) TCGA-85-7696-01 10 26825106 26825106 G A APBB1IP Missense_Mutation p.R335Q 0.63 deleterious(0) probably_damaging(1) TCGA-85-7696-01 10 45498887 45498887 G A ZNF22 Missense_Mutation p.R24H 0.11 tolerated(0.18) benign(0.001) TCGA-85-7696-01 10 58118006 58118006 T C ZWINT Intron 0.38 TCGA-85-7696-01 10 84711234 84711234 A G NRG3 Missense_Mutation p.E355G 0.48 deleterious(0) benign(0.392) TCGA-85-7696-01 10 98762690 98762690 C G SLIT1 Missense_Mutation p.G1309R 0.17 deleterious(0.01) benign(0.028) TCGA-85-7696-01 11 10785355 10785355 T A CTR9 Missense_Mutation p.Y375N 0.21 deleterious(0.01) probably_damaging(0.987) TCGA-85-7696-01 11 108099912 108099912 C T ATM Nonsense_Mutation p.Q65* 0.50 TCGA-85-7696-01 11 1095309 1095309 C T MUC2 Silent p.P2043P 0.21 TCGA-85-7696-01 11 114392929 114392929 G T NXPE1 Missense_Mutation p.P327T 0.21 deleterious(0) probably_damaging(0.989) TCGA-85-7696-01 11 116746134 116746134 C T SIK3 Missense_Mutation p.V367I 0.44 tolerated_low_confidence(0.07) benign(0.01) TCGA-85-7696-01 11 120998859 120998859 G A TECTA Missense_Mutation p.D725N 0.17 deleterious(0) probably_damaging(1) TCGA-85-7696-01 11 121038795 121038795 A T TECTA Silent p.T1873T 0.25 TCGA-85-7696-01 11 121460847 121460847 G A SORL1 Missense_Mutation p.D1393N 0.09 deleterious(0) probably_damaging(1) TCGA-85-7696-01 11 124120508 124120508 T C OR8G1 Missense_Mutation p.L29P 0.47 deleterious_low_confidence(0.01) benign(0.093) TCGA-85-7696-01 11 16837734 16837734 A T PLEKHA7 Missense_Mutation p.H648Q 0.32 tolerated(0.32) probably_damaging(0.957) TCGA-85-7696-01 11 198571 198571 G C ODF3 Missense_Mutation p.D174H 0.39 deleterious(0) benign(0.009) TCGA-85-7696-01 11 5068052 5068052 T C OR52J3 Silent p.C99C 0.15 TCGA-85-7696-01 11 55433091 55433091 G A OR4C6 Missense_Mutation p.G150E 0.49 deleterious_low_confidence(0.01) possibly_damaging(0.521) TCGA-85-7696-01 11 55606400 55606400 A T OR5D16 Missense_Mutation p.H58L 0.33 deleterious(0) possibly_damaging(0.901) TCGA-85-7696-01 11 56020467 56020467 G C OR5T3 Missense_Mutation p.R264S 0.30 deleterious(0.02) possibly_damaging(0.461) TCGA-85-7696-01 11 56468322 56468322 T C OR9G1 Silent p.I153I 0.10 TCGA-85-7696-01 11 59282877 59282877 C T OR4D9 Silent p.L164L 0.42 TCGA-85-7696-01 11 6190871 6190871 C T OR52B2 Missense_Mutation p.R229H 0.47 tolerated(0.34) benign(0.025) TCGA-85-7696-01 11 7064203 7064203 A T NLRP14 Nonsense_Mutation p.K316* 0.19 TCGA-85-7696-01 11 71277218 71277218 C G KRTAP5-10 Silent p.P195P 0.20 TCGA-85-7696-01 11 73008620 73008620 A T P2RY6 3'UTR 0.50 TCGA-85-7696-01 11 77649704 77649704 C G INTS4 Missense_Mutation p.E386D 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-85-7696-01 11 78443602 78443602 C T TENM4 Missense_Mutation p.G966D 0.46 deleterious(0) probably_damaging(1) TCGA-85-7696-01 12 102036300 102036300 A T MYBPC1 Missense_Mutation p.T232S 0.28 deleterious(0.01) probably_damaging(0.995) TCGA-85-7696-01 12 102036301 102036301 C T MYBPC1 Missense_Mutation p.T232I 0.26 deleterious(0) probably_damaging(0.998) TCGA-85-7696-01 12 104081982 104081982 C T STAB2 Nonsense_Mutation p.R1012* 0.10 TCGA-85-7696-01 12 130184453 130184453 C A TMEM132D Silent p.V290V 0.14 TCGA-85-7696-01 12 14994086 14994086 A G ART4 Missense_Mutation p.V49A 0.29 tolerated(0.31) benign(0.008) TCGA-85-7696-01 12 1940471 1940471 C A LRTM2 Missense_Mutation p.D146E 0.45 deleterious(0) probably_damaging(1) TCGA-85-7696-01 12 20766409 20766409 C T PDE3A Silent p.A348A 0.25 TCGA-85-7696-01 12 51279228 51279228 A T TMPRSS12 Intron 0.53 TCGA-85-7696-01 12 52774254 52774254 C A KRT84 Missense_Mutation p.Q439H 0.12 deleterious(0) probably_damaging(0.998) TCGA-85-7696-01 12 78452831 78452831 G C NAV3 Missense_Mutation p.D858H 0.37 deleterious(0) probably_damaging(0.963) TCGA-85-7696-01 12 8023558 8023558 G A SLC2A14 5'UTR 0.23 TCGA-85-7696-01 12 80626876 80626876 A G OTOGL Silent p.Q263Q 0.54 TCGA-85-7696-01 12 8666260 8666260 T C CLEC4D 5'UTR 0.35 TCGA-85-7696-01 13 100169882 100169882 A G TM9SF2 Silent p.L62L 0.12 TCGA-85-7696-01 13 107145501 107145501 C T EFNB2 Missense_Mutation p.D297N 0.49 tolerated(0.18) possibly_damaging(0.603) TCGA-85-7696-01 13 23905782 23905782 C A SACS Missense_Mutation p.R4078L 0.22 probably_damaging(0.987) TCGA-85-7696-01 13 70370946 70370946 G A KLHL1 Silent p.N521N 0.46 TCGA-85-7696-01 14 106174131 106174131 A T IGHA1 Missense_Mutation p.S220T 0.19 tolerated(0.99) benign(0.005) TCGA-85-7696-01 14 106174134 106174134 G T IGHA1 Missense_Mutation p.L219I 0.23 tolerated(1) benign(0.003) TCGA-85-7696-01 14 106174136 106174136 G T IGHA1 Missense_Mutation p.T218N 0.17 tolerated(0.11) benign(0.144) TCGA-85-7696-01 14 20585837 20585837 A G OR4K17 Missense_Mutation p.Y91C 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-85-7696-01 14 44974898 44974898 C A FSCB Missense_Mutation p.E431D 0.42 tolerated(0.06) possibly_damaging(0.801) TCGA-85-7696-01 14 51226637 51226637 A T NIN Silent p.L779L 0.17 TCGA-85-7696-01 14 57741200 57741200 A T AP5M1 Missense_Mutation p.I105L 0.18 tolerated(0.12) benign(0.005) TCGA-85-7696-01 14 61115818 61115818 C G SIX1 Silent p.L30L 0.39 TCGA-85-7696-01 14 63784473 63784473 G A GPHB5 RNA 0.24 TCGA-85-7696-01 14 93760264 93760264 C T BTBD7 Missense_Mutation p.E368K 0.12 deleterious(0.03) possibly_damaging(0.906) TCGA-85-7696-01 15 24922294 24922294 C A NPAP1 Missense_Mutation p.P427H 0.20 tolerated(0.11) benign(0.263) TCGA-85-7696-01 15 25436390 25436390 G T SNORD115-11 3'Flank 0.55 TCGA-85-7696-01 15 44877864 44877864 C G SPG11 Missense_Mutation p.E1697D 0.05 tolerated(0.25) benign(0.08) TCGA-85-7696-01 15 65454964 65454964 C T CLPX Silent p.R231R 0.15 TCGA-85-7696-01 15 67636516 67636516 G C IQCH Missense_Mutation p.K208N 0.27 tolerated(0.06) benign(0.005) TCGA-85-7696-01 15 75685119 75685119 G A SIN3A Missense_Mutation p.P772L 0.34 tolerated(0.26) benign(0.001) TCGA-85-7696-01 15 85383069 85383069 C T ALPK3 Missense_Mutation p.R389C 0.32 deleterious(0.03) benign(0.049) TCGA-85-7696-01 15 93499704 93499704 A T CHD2 Missense_Mutation p.I609F 0.44 tolerated(0.33) benign(0.219) TCGA-85-7696-01 16 14755875 14755875 C A BFAR Missense_Mutation p.P304T 0.12 deleterious(0.01) probably_damaging(0.931) TCGA-85-7696-01 16 31499744 31499744 G T SLC5A2 Silent p.V354V 0.17 TCGA-85-7696-01 16 4511859 4511859 C T NMRAL1 Silent p.L274L 0.32 TCGA-85-7696-01 16 67709459 67709459 C T GFOD2 Missense_Mutation p.V253M 0.10 tolerated(0.12) benign(0.08) TCGA-85-7696-01 16 67914632 67914632 G A EDC4 Missense_Mutation p.G757D 0.10 tolerated_low_confidence(0.63) benign(0.008) TCGA-85-7696-01 16 81095060 81095060 G A C16orf46 Silent p.C298C 0.35 TCGA-85-7696-01 16 82033195 82033195 C - SDR42E1 Frame_Shift_Del p.A235Pfs*5 0.31 TCGA-85-7696-01 16 9858466 9858466 C A GRIN2A Missense_Mutation p.V979L 0.28 tolerated(0.62) benign(0.034) TCGA-85-7696-01 17 46627828 46627828 C A HOXB3 Silent p.G388G 0.43 TCGA-85-7696-01 17 46654314 46654314 C G HOXB4 Missense_Mutation p.E176Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-85-7696-01 17 51900894 51900894 A T KIF2B Missense_Mutation p.Q167L 0.23 tolerated(0.1) benign(0.02) TCGA-85-7696-01 17 51901696 51901696 G A KIF2B Silent p.K434K 0.10 TCGA-85-7696-01 17 65989146 65989146 G A C17orf58 Intron 0.15 TCGA-85-7696-01 17 67039765 67039765 G T ABCA9 Missense_Mutation p.A222E 0.29 tolerated(1) benign(0.006) TCGA-85-7696-01 17 71418432 71418432 G A SDK2 Missense_Mutation p.T680I 0.44 deleterious(0) probably_damaging(0.98) TCGA-85-7696-01 17 7577574 7577574 T C TP53 Missense_Mutation p.Y236C 0.68 deleterious(0) probably_damaging(0.996) TCGA-85-7696-01 17 79970070 79970070 C T ASPSCR1 Intron 0.58 TCGA-85-7696-01 18 29867538 29867538 C T GAREM Missense_Mutation p.R341Q 0.27 deleterious(0.01) possibly_damaging(0.86) TCGA-85-7696-01 18 51880886 51880886 C T STARD6 Missense_Mutation p.D20N 0.08 deleterious(0) probably_damaging(0.971) TCGA-85-7696-01 18 77659188 77659188 C A KCNG2 Missense_Mutation p.A258E 0.33 deleterious(0) probably_damaging(1) TCGA-85-7696-01 18 9254761 9254761 G A ANKRD12 Missense_Mutation p.R499K 0.20 tolerated_low_confidence(0.41) benign(0.2) TCGA-85-7696-01 19 17750711 17750711 G A UNC13A Missense_Mutation p.R932C 0.16 deleterious(0) possibly_damaging(0.794) TCGA-85-7696-01 19 20728742 20728742 C G ZNF737 Missense_Mutation p.Q89H 0.15 deleterious(0.03) benign(0.006) TCGA-85-7696-01 19 31039303 31039303 T C ZNF536 Missense_Mutation p.V926A 0.27 tolerated(0.21) probably_damaging(0.986) TCGA-85-7696-01 19 36271390 36271390 G A ARHGAP33 Missense_Mutation p.R231Q 0.09 tolerated_low_confidence(0.08) benign(0.417) TCGA-85-7696-01 19 46387425 46387425 C T IRF2BP1 Silent p.K536K 0.41 TCGA-85-7696-01 19 47423682 47423682 C G ARHGAP35 Missense_Mutation p.R584G 0.54 tolerated(0.35) benign(0.145) TCGA-85-7696-01 19 50475272 50475272 T C VRK3 3'Flank 0.52 TCGA-85-7696-01 19 54848806 54848806 C A LILRA4 Missense_Mutation p.A273S 0.52 tolerated(0.06) possibly_damaging(0.893) TCGA-85-7696-01 19 55021778 55021778 G A LAIR2 Silent p.%3D 0.67 TCGA-85-7696-01 19 6710717 6710717 G A C3 Missense_Mutation p.A540V 0.32 tolerated(0.37) benign(0.005) TCGA-85-7696-01 19 8321863 8321863 G T CERS4 Missense_Mutation p.V215L 0.08 deleterious(0.05) probably_damaging(0.93) TCGA-85-7696-01 1 11008488 11008488 G T C1orf127 Missense_Mutation p.S568R 0.16 tolerated(0.67) benign(0.001) TCGA-85-7696-01 1 116574202 116574202 G - SLC22A15 Frame_Shift_Del 0.41 TCGA-85-7696-01 1 144915606 144915606 G A PDE4DIP Missense_Mutation p.P607S 0.49 deleterious(0.01) probably_damaging(0.998) TCGA-85-7696-01 1 157551421 157551421 G T FCRL4 Missense_Mutation p.N383K 0.07 tolerated(0.36) benign(0.012) TCGA-85-7696-01 1 157648559 157648559 C G FCRL3 Missense_Mutation p.E716Q 0.13 deleterious(0.03) possibly_damaging(0.756) TCGA-85-7696-01 1 158619701 158619701 C T SPTA1 Missense_Mutation p.A1172T 0.49 tolerated(0.74) probably_damaging(1) TCGA-85-7696-01 1 159038388 159038388 A G AIM2 Silent p.R122R 0.28 TCGA-85-7696-01 1 159166661 159166661 T A CADM3 Intron 0.48 TCGA-85-7696-01 1 159166662 159166662 G T CADM3 Intron 0.48 TCGA-85-7696-01 1 159888691 159888691 G C TAGLN2 Missense_Mutation p.L167V 0.48 deleterious(0) possibly_damaging(0.792) TCGA-85-7696-01 1 159888695 159888695 G A TAGLN2 Silent p.N165N 0.48 TCGA-85-7696-01 1 170688871 170688871 C G PRRX1 Missense_Mutation p.D82E 0.07 tolerated(0.66) benign(0) TCGA-85-7696-01 1 170928632 170928632 C A MROH9 Missense_Mutation p.S61Y 0.23 tolerated(0.07) possibly_damaging(0.509) TCGA-85-7696-01 1 171605849 171605849 C T MYOC Missense_Mutation p.G244E 0.05 deleterious(0.02) possibly_damaging(0.742) TCGA-85-7696-01 1 173912593 173912593 C T RC3H1 Missense_Mutation p.R1041Q 0.22 tolerated_low_confidence(0.2) benign(0.187) TCGA-85-7696-01 1 176564093 176564093 G A PAPPA2 Silent p.A451A 0.16 TCGA-85-7696-01 1 176738755 176738755 C T PAPPA2 Missense_Mutation p.L1446F 0.51 deleterious(0.03) probably_damaging(0.999) TCGA-85-7696-01 1 186097318 186097318 G A HMCN1 Missense_Mutation p.G4267R 0.21 probably_damaging(1) TCGA-85-7696-01 1 197168716 197168716 C T ZBTB41 Silent p.E296E 0.24 TCGA-85-7696-01 1 216737621 216737621 G C ESRRG Missense_Mutation p.L280V 0.31 tolerated(0.05) possibly_damaging(0.846) TCGA-85-7696-01 1 235971807 235971807 G A LYST Nonsense_Mutation p.Q771* 0.16 TCGA-85-7696-01 1 236156984 236156984 C A NID1 Missense_Mutation p.V906L 0.62 tolerated(0.23) benign(0.002) TCGA-85-7696-01 1 2415891 2415891 C T PLCH2 Missense_Mutation p.A190V 0.28 deleterious(0.01) probably_damaging(0.944) TCGA-85-7696-01 1 248004440 248004440 C A OR11L1 Silent p.G253G 0.49 TCGA-85-7696-01 1 248005068 248005068 A C OR11L1 Missense_Mutation p.V44G 0.15 deleterious(0) benign(0.107) TCGA-85-7696-01 1 248814156 248814156 G A OR2T27 Silent p.A10A 0.21 TCGA-85-7696-01 1 53715200 53715200 C G LRP8 Missense_Mutation p.W902S 0.67 deleterious_low_confidence(0.01) benign(0.081) TCGA-85-7696-01 1 77587963 77587963 G C PIGK Missense_Mutation p.H356Q 0.65 deleterious(0.02) benign(0.107) TCGA-85-7696-01 20 2639469 2639469 G A IDH3B Silent p.D362D 0.34 TCGA-85-7696-01 20 32996564 32996564 A T ITCH Missense_Mutation p.T60S 0.30 tolerated(0.81) benign(0.085) TCGA-85-7696-01 20 33872334 33872334 C T EIF6 Intron 0.25 TCGA-85-7696-01 20 57769598 57769598 C A ZNF831 Missense_Mutation p.P1175H 0.30 deleterious(0) probably_damaging(0.998) TCGA-85-7696-01 20 58348447 58348447 C A PHACTR3 Missense_Mutation p.P289T 0.45 deleterious(0) possibly_damaging(0.77) TCGA-85-7696-01 20 61303203 61303203 C T SLCO4A1 Silent p.A709A 0.36 TCGA-85-7696-01 20 61391571 61391571 C A NTSR1 Silent p.S403S 0.22 TCGA-85-7696-01 21 10933937 10933937 C T TPTE Silent p.Q314Q 0.25 TCGA-85-7696-01 21 10942745 10942745 C T TPTE Silent p.R232R 0.08 TCGA-85-7696-01 21 16337949 16337949 G T NRIP1 Silent p.V855V 0.38 TCGA-85-7696-01 21 30442587 30442587 A G CCT8 Silent p.R44R 0.19 TCGA-85-7696-01 21 40552254 40552254 G A PSMG1 Missense_Mutation p.T117I 0.12 deleterious(0.03) benign(0.339) TCGA-85-7696-01 21 40641892 40641892 C T BRWD1 Missense_Mutation p.G488E 0.52 deleterious(0) probably_damaging(0.999) TCGA-85-7696-01 21 43862652 43862652 T A UBASH3A Missense_Mutation p.L526H 0.42 deleterious(0) probably_damaging(0.981) TCGA-85-7696-01 21 45509805 45509805 C T TRAPPC10 Missense_Mutation p.S954L 0.11 deleterious(0) benign(0.002) TCGA-85-7696-01 21 47703549 47703549 C T MCM3AP Missense_Mutation p.V475M 0.13 deleterious(0) probably_damaging(0.998) TCGA-85-7696-01 22 17443604 17443604 C A GAB4 3'UTR 0.73 TCGA-85-7696-01 22 26839062 26839062 G C ASPHD2 Splice_Site p.X334_splice 0.61 TCGA-85-7696-01 22 36920675 36920675 C G EIF3D Missense_Mutation p.A92P 0.86 tolerated(0.68) benign(0.006) TCGA-85-7696-01 2 107050714 107050714 G T RGPD3 Missense_Mutation p.D725E 0.34 tolerated(1) benign(0.001) TCGA-85-7696-01 2 119735497 119735497 A T MARCO Missense_Mutation p.D251V 0.33 deleterious(0) probably_damaging(0.997) TCGA-85-7696-01 2 137814400 137814400 G T THSD7B Nonsense_Mutation p.E184* 0.04 TCGA-85-7696-01 2 1491655 1491655 C T TPO Nonsense_Mutation p.Q554* 0.27 TCGA-85-7696-01 2 153415278 153415278 A G FMNL2 Silent p.E128E 0.50 TCGA-85-7696-01 2 154801061 154801061 G T GALNT13 Missense_Mutation p.W17C 0.11 deleterious(0) probably_damaging(1) TCGA-85-7696-01 2 155555384 155555384 C G KCNJ3 Missense_Mutation p.P33A 0.27 tolerated(0.83) benign(0) TCGA-85-7696-01 2 178098810 178098810 C G NFE2L2 Missense_Mutation p.E79Q 0.31 deleterious(0) probably_damaging(1) TCGA-85-7696-01 2 179604290 179604290 G T TTN Missense_Mutation p.A4557D 0.31 TCGA-85-7696-01 2 225662565 225662565 C G DOCK10 Missense_Mutation p.R1543T 0.09 deleterious(0) probably_damaging(0.997) TCGA-85-7696-01 2 233321169 233321169 G T ALPI Missense_Mutation p.G60C 0.12 deleterious(0) probably_damaging(1) TCGA-85-7696-01 2 240969109 240969109 G A OR6B2 Silent p.T246T 0.17 TCGA-85-7696-01 2 243056841 243056841 T G AC093642.5 RNA 0.25 TCGA-85-7696-01 2 27800239 27800239 C T C2orf16 Missense_Mutation p.P267L 0.44 tolerated(0.26) benign(0.129) TCGA-85-7696-01 2 54482854 54482854 C - TSPYL6 Frame_Shift_Del p.K146Rfs*5 0.08 TCGA-85-7696-01 2 89339735 89339735 C A IGKV1-12 Missense_Mutation p.A113S 0.28 tolerated(0.4) benign(0.001) TCGA-85-7696-01 2 8958824 8958824 C - KIDINS220 Splice_Site p.X69_splice 0.20 TCGA-85-7696-01 2 90229276 90229276 C T IGKV1D-42 Silent p.F32F 0.41 TCGA-85-7696-01 2 99193476 99193476 C T INPP4A Missense_Mutation p.R891W 0.08 deleterious(0) probably_damaging(1) TCGA-85-7696-01 3 111632664 111632664 T A PHLDB2 Intron 0.15 TCGA-85-7696-01 3 121647322 121647322 C A SLC15A2 Missense_Mutation p.L421M 0.13 tolerated(0.28) benign(0.41) TCGA-85-7696-01 3 134266217 134266217 C T CEP63 Nonsense_Mutation p.Q324* 0.16 TCGA-85-7696-01 3 179605498 179605498 C T PEX5L Silent p.S91S 0.20 TCGA-85-7696-01 3 193032793 193032793 C T ATP13A5 Missense_Mutation p.S709N 0.35 tolerated(0.57) benign(0.012) TCGA-85-7696-01 3 19554801 19554801 C A KCNH8 Missense_Mutation p.P807T 0.35 tolerated(0.06) benign(0.421) TCGA-85-7696-01 3 3886719 3886719 A T LRRN1 Missense_Mutation p.T132S 0.42 tolerated(0.62) benign(0.008) TCGA-85-7696-01 3 48698359 48698359 G C CELSR3 Missense_Mutation p.T570S 0.42 tolerated(0.06) possibly_damaging(0.881) TCGA-85-7696-01 3 48718801 48718801 G A NCKIPSD Silent p.I337I 0.25 TCGA-85-7696-01 3 49148553 49148553 G C USP19 Silent p.V1123V 0.22 TCGA-85-7696-01 3 50131258 50131258 A G RBM5 Missense_Mutation p.S97G 0.10 deleterious(0.02) possibly_damaging(0.878) TCGA-85-7696-01 3 50598403 50598403 C A C3orf18 Missense_Mutation p.G118V 0.41 tolerated(0.15) probably_damaging(0.988) TCGA-85-7696-01 3 77526677 77526678 - A ROBO2 Frame_Shift_Ins p.D186Rfs*6 0.10 TCGA-85-7696-01 3 81630373 81630373 C A GBE1 Silent p.T463T 0.47 TCGA-85-7696-01 3 98002574 98002574 C T OR5H2 Silent p.V281V 0.59 TCGA-85-7696-01 4 123159297 123159297 A C KIAA1109 Missense_Mutation p.I1209L 0.07 benign(0) TCGA-85-7696-01 4 123159320 123159320 G T KIAA1109 Missense_Mutation p.Q1216H 0.06 benign(0.002) TCGA-85-7696-01 4 187540860 187540860 C A FAT1 Nonsense_Mutation p.E2294* 0.41 TCGA-85-7696-01 4 509828 509828 G T PIGG Missense_Mutation p.G323V 0.59 deleterious(0) probably_damaging(0.986) TCGA-85-7696-01 4 651268 651268 G A PDE6B Silent p.E462E 0.50 TCGA-85-7696-01 4 69362638 69362638 C T TMPRSS11E 3'UTR 0.32 TCGA-85-7696-01 4 83978514 83978514 T C COPS4 Missense_Mutation p.L223P 0.40 tolerated(0.09) possibly_damaging(0.555) TCGA-85-7696-01 4 89576376 89576376 G A HERC3 Missense_Mutation p.D277N 0.43 tolerated(1) benign(0.424) TCGA-85-7696-01 5 140181101 140181101 G C PCDHA3 Missense_Mutation p.E107Q 0.29 deleterious_low_confidence(0.03) probably_damaging(0.987) TCGA-85-7696-01 5 140308583 140308583 C T PCDHAC1 Silent p.F702F 0.06 TCGA-85-7696-01 5 140553065 140553065 G T PCDHB7 Missense_Mutation p.G217C 0.42 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-85-7696-01 5 140559142 140559142 A G PCDHB8 Silent p.T509T 0.36 TCGA-85-7696-01 5 140720281 140720281 C T PCDHGA2 Silent p.S581S 0.21 TCGA-85-7696-01 5 145379756 145379756 G T SH3RF2 Missense_Mutation p.G172W 0.31 deleterious(0) probably_damaging(1) TCGA-85-7696-01 5 151234659 151234659 G C GLRA1 Silent p.P213P 0.44 TCGA-85-7696-01 5 179290990 179290990 G A TBC1D9B Missense_Mutation p.R1071C 0.10 tolerated(0.05) benign(0.001) TCGA-85-7696-01 5 23526994 23526994 G T PRDM9 Missense_Mutation p.Q599H 0.54 deleterious(0.03) possibly_damaging(0.88) TCGA-85-7696-01 5 33964029 33964029 A T SLC45A2 Missense_Mutation p.F219I 0.07 deleterious(0) probably_damaging(0.978) TCGA-85-7696-01 5 45262124 45262124 G T HCN1 Missense_Mutation p.P858T 0.28 tolerated_low_confidence(0.14) benign(0.029) TCGA-85-7696-01 6 100960610 100960610 T C ASCC3 Missense_Mutation p.Q2087R 0.44 tolerated(0.73) benign(0.001) TCGA-85-7696-01 6 106967857 106967857 T C AIM1 Missense_Mutation p.L517P 0.40 tolerated_low_confidence(0.31) benign(0.003) TCGA-85-7696-01 6 123786098 123786098 G T TRDN Missense_Mutation p.P295Q 0.21 tolerated_low_confidence(0.07) possibly_damaging(0.896) TCGA-85-7696-01 6 129609083 129609083 G A LAMA2 Missense_Mutation p.G877S 0.16 deleterious(0.02) probably_damaging(0.981) TCGA-85-7696-01 6 130465772 130465772 G - SAMD3 Frame_Shift_Del p.Q486Kfs*6 0.34 TCGA-85-7696-01 6 132022491 132022491 G A OR2A4 Silent p.P17P 0.30 TCGA-85-7696-01 6 132030751 132030751 A T CTAGE9 Silent p.A469A 0.13 TCGA-85-7696-01 6 149700606 149700606 G A TAB2 Missense_Mutation p.E519K 0.27 tolerated(0.19) benign(0.067) TCGA-85-7696-01 6 152443755 152443755 C A SYNE1 Missense_Mutation p.G8737V 0.53 benign(0.031) TCGA-85-7696-01 6 152702331 152702331 G C SYNE1 Missense_Mutation p.T2940R 0.10 possibly_damaging(0.775) TCGA-85-7696-01 6 170173445 170173446 - T ERMARD Frame_Shift_Ins p.A423Cfs*5 0.19 TCGA-85-7696-01 6 38890909 38890909 G A DNAH8 Missense_Mutation p.E3363K 0.26 probably_damaging(1) TCGA-85-7696-01 6 42666008 42666008 C T PRPH2 3'UTR 0.07 TCGA-85-7696-01 6 49574571 49574571 A G RHAG Missense_Mutation p.V401A 0.44 tolerated(0.16) benign(0.258) TCGA-85-7696-01 6 57398138 57398138 A G PRIM2 Missense_Mutation p.T281A 0.14 tolerated(0.77) benign(0.001) TCGA-85-7696-01 6 73834332 73834332 A G KCNQ5 Intron 0.22 TCGA-85-7696-01 7 100678321 100678321 C A MUC17 Missense_Mutation p.S1208R 0.14 unknown(0) TCGA-85-7696-01 7 107408026 107408026 C T SLC26A3 Missense_Mutation p.E757K 0.26 tolerated_low_confidence(0.92) benign(0) TCGA-85-7696-01 7 11521426 11521426 G C THSD7A Missense_Mutation p.A669G 0.07 tolerated(0.46) benign(0.423) TCGA-85-7696-01 7 126249552 126249552 C T GRM8 Missense_Mutation p.G453D 0.45 tolerated(0.23) probably_damaging(0.993) TCGA-85-7696-01 7 127954828 127954828 G A RBM28 Silent p.G678G 0.28 TCGA-85-7696-01 7 128355488 128355488 G T FAM71F1 5'UTR 0.42 TCGA-85-7696-01 7 129845281 129845281 C A TMEM209 5'UTR 0.37 TCGA-85-7696-01 7 134650131 134650131 C A CALD1 Silent p.P790P 0.08 TCGA-85-7696-01 7 141423051 141423051 C G WEE2 Missense_Mutation p.S333C 0.23 deleterious(0.05) benign(0.337) TCGA-85-7696-01 7 143417226 143417226 G T FAM115C Silent p.L358L 0.22 TCGA-85-7696-01 7 24846516 24846516 T C OSBPL3 Missense_Mutation p.M775V 0.33 deleterious(0.04) benign(0.056) TCGA-85-7696-01 7 43590146 43590146 G T HECW1 Missense_Mutation p.G1451C 0.42 deleterious(0) probably_damaging(0.994) TCGA-85-7696-01 7 45148693 45148693 G A TBRG4 Silent p.S48S 0.40 TCGA-85-7696-01 7 45725723 45725723 C T ADCY1 Missense_Mutation p.R746W 0.08 deleterious(0) probably_damaging(0.999) TCGA-85-7696-01 7 45956846 45956846 T C IGFBP3 Missense_Mutation p.N205S 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-85-7696-01 7 71252795 71252795 C A CALN1 Missense_Mutation p.A251S 0.34 deleterious(0) probably_damaging(0.99) TCGA-85-7696-01 7 8153652 8153652 G A ICA1 Silent p.D451D 0.40 TCGA-85-7696-01 7 92166126 92166126 G A RBM48 Intron 0.25 TCGA-85-7696-01 7 94049718 94049718 G A COL1A2 Missense_Mutation p.V717I 0.11 unknown(0) TCGA-85-7696-01 7 96639317 96639317 C T DLX6 Silent p.S280S 0.35 TCGA-85-7696-01 8 101074919 101074919 C T RGS22 Missense_Mutation p.E472K 0.14 deleterious(0) probably_damaging(0.971) TCGA-85-7696-01 8 10584083 10584083 T G SOX7 Missense_Mutation p.N163T 0.40 deleterious(0.01) benign(0.161) TCGA-85-7696-01 8 110460421 110460421 G C PKHD1L1 Missense_Mutation p.E1942D 0.19 tolerated(1) benign(0.001) TCGA-85-7696-01 8 113293555 113293555 G A CSMD3 Missense_Mutation p.T3119I 0.50 tolerated(0.1) probably_damaging(0.925) TCGA-85-7696-01 8 131916064 131916064 G T ADCY8 Missense_Mutation p.S622Y 0.51 deleterious(0.01) possibly_damaging(0.852) TCGA-85-7696-01 8 17612851 17612851 C A MTUS1 Nonsense_Mutation p.E156* 0.32 TCGA-85-7696-01 8 26627940 26627940 C A ADRA1A Missense_Mutation p.R376L 0.32 deleterious_low_confidence(0.04) benign(0.436) TCGA-85-7696-01 8 2876024 2876024 C T CSMD1 Nonsense_Mutation p.W2668* 0.13 TCGA-85-7696-01 8 30706084 30706084 C T TEX15 Silent p.K150K 0.40 TCGA-85-7696-01 8 37730232 37730232 C T RAB11FIP1 Silent p.Q696Q 0.30 TCGA-85-7696-01 8 42317430 42317430 C A SLC20A2 Missense_Mutation p.M199I 0.49 tolerated(0.08) benign(0.171) TCGA-85-7696-01 8 70513922 70513922 G A SULF1 Missense_Mutation p.E307K 0.27 deleterious(0) benign(0.142) TCGA-85-7696-01 8 77768511 77768511 G A ZFHX4 Silent p.L3118L 0.20 TCGA-85-7696-01 8 95201490 95201490 C - CDH17 Frame_Shift_Del p.K26Sfs*6 0.26 TCGA-85-7696-01 9 107457684 107457684 G T OR13D1 Nonsense_Mutation p.E328* 0.41 TCGA-85-7696-01 9 115962196 115962196 G C FKBP15 Silent p.L182L 0.13 TCGA-85-7696-01 9 123205956 123205956 T A CDK5RAP2 Silent p.T1030T 0.39 TCGA-85-7696-01 9 126143830 126143830 T C DENND1A Missense_Mutation p.R971G 0.27 tolerated_low_confidence(0.1) benign(0.001) TCGA-85-7696-01 9 127262459 127262459 C T NR5A1 Silent p.A260A 0.27 TCGA-85-7696-01 9 127572690 127572690 G A OLFML2A Silent p.%3D 0.53 TCGA-85-7696-01 9 132980195 132980195 C T NCS1 Silent p.F58F 0.29 TCGA-85-7696-01 9 133948025 133948025 G A LAMC3 Missense_Mutation p.E1074K 0.15 tolerated(0.06) benign(0.027) TCGA-85-7696-01 9 138594215 138594215 G A KCNT1 Splice_Site p.X37_splice 0.27 TCGA-85-7696-01 9 4823599 4823599 G A RCL1 Missense_Mutation p.R63Q 0.58 tolerated(0.44) benign(0.103) TCGA-85-7696-01 9 6554670 6554670 C T GLDC Missense_Mutation p.V772M 0.57 deleterious(0) possibly_damaging(0.859) TCGA-85-7696-01 9 79320476 79320476 A T PRUNE2 Silent p.T2238T 0.24 TCGA-85-7696-01 X 10535200 10535200 C T MID1 Missense_Mutation p.A130T 0.15 deleterious(0) probably_damaging(0.999) TCGA-85-7696-01 X 107978669 107978669 G A IRS4 Silent p.I302I 0.54 TCGA-85-7696-01 X 124029881 124029881 C A TENM1 Missense_Mutation p.A143S 0.71 tolerated_low_confidence(0.17) possibly_damaging(0.714) TCGA-85-7696-01 X 130419294 130419294 C G IGSF1 Missense_Mutation p.V176L 0.63 tolerated(0.54) benign(0.098) TCGA-85-7696-01 X 16170591 16170591 C T GRPR Silent p.S326S 0.72 TCGA-85-7696-01 X 18664181 18664181 G T CDKL5 Missense_Mutation p.R923L 0.18 deleterious_low_confidence(0) benign(0.25) TCGA-85-7696-01 X 27999176 27999176 C T DCAF8L1 Silent p.P92P 0.22 TCGA-85-7696-01 X 3240254 3240254 G A MXRA5 Missense_Mutation p.R1158C 0.16 deleterious(0) possibly_damaging(0.886) TCGA-85-7696-01 X 37028594 37028594 C A FAM47C Missense_Mutation p.P704Q 0.73 tolerated(0.16) benign(0.439) TCGA-85-7696-01 X 53114222 53114222 C G TSPYL2 Missense_Mutation p.H362D 0.38 tolerated(0.22) benign(0.268) TCGA-85-7697-01 10 106602591 106602591 C A SORCS3 Silent p.G223G 0.13 TCGA-85-7697-01 10 108489829 108489829 C T SORCS1 Missense_Mutation p.E335K 0.19 deleterious(0) probably_damaging(0.996) TCGA-85-7697-01 10 115962010 115962010 G C TDRD1 Missense_Mutation p.E217Q 0.08 tolerated(0.12) benign(0.018) TCGA-85-7697-01 10 118101581 118101581 G A CCDC172 Missense_Mutation p.D106N 0.20 deleterious(0) benign(0.108) TCGA-85-7697-01 10 118383549 118383549 C A PNLIPRP2 Missense_Mutation p.S48Y 0.15 deleterious(0) probably_damaging(0.949) TCGA-85-7697-01 10 25886785 25886785 C T GPR158 Missense_Mutation p.R744W 0.10 deleterious(0) possibly_damaging(0.896) TCGA-85-7697-01 10 26500828 26500828 C G MYO3A Missense_Mutation p.P1596R 0.13 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-85-7697-01 10 29839621 29839621 C A SVIL Silent p.R244R 0.16 TCGA-85-7697-01 10 33196062 33196062 G C ITGB1 Intron 0.07 TCGA-85-7697-01 10 45936066 45936066 G T ALOX5 Silent p.V390V 0.16 TCGA-85-7697-01 10 46999825 46999825 C T GPRIN2 Silent p.T315T 0.10 TCGA-85-7697-01 10 54053646 54053646 G T PRKG1 Missense_Mutation p.D683Y 0.13 deleterious(0) probably_damaging(1) TCGA-85-7697-01 10 69882071 69882071 G A MYPN Silent p.V292V 0.14 TCGA-85-7697-01 10 75563773 75563773 C T NDST2 Silent p.G615G 0.16 TCGA-85-7697-01 11 111608227 111608227 C A PPP2R1B Missense_Mutation p.R619L 0.12 tolerated_low_confidence(0.14) benign(0.025) TCGA-85-7697-01 11 119029408 119029408 G A ABCG4 Missense_Mutation p.A437T 0.10 tolerated(0.97) benign(0.053) TCGA-85-7697-01 11 119156247 119156247 G T CBL Nonsense_Mutation p.G638* 0.24 TCGA-85-7697-01 11 11957929 11957929 G T USP47 Missense_Mutation p.R582L 0.13 tolerated(0.35) possibly_damaging(0.88) TCGA-85-7697-01 11 17452411 17452411 C T ABCC8 Silent p.P589P 0.29 TCGA-85-7697-01 11 17452412 17452412 G T ABCC8 Missense_Mutation p.P589Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-85-7697-01 11 19259642 19259642 A G E2F8 Missense_Mutation p.M18T 0.21 tolerated(0.34) benign(0.001) TCGA-85-7697-01 11 30033960 30033960 C A KCNA4 Missense_Mutation p.R89L 0.20 tolerated_low_confidence(0.11) benign(0) TCGA-85-7697-01 11 36615022 36615022 G T RAG2 Missense_Mutation p.L233M 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-85-7697-01 11 40136996 40136996 G A LRRC4C Missense_Mutation p.P283S 0.12 deleterious(0) probably_damaging(1) TCGA-85-7697-01 11 47359092 47359092 A G MYBPC3 Missense_Mutation p.W818R 0.26 deleterious(0) probably_damaging(1) TCGA-85-7697-01 11 48238373 48238373 A G OR4B1 Silent p.T4T 0.24 TCGA-85-7697-01 11 495048 495048 G A RNH1 Missense_Mutation p.A378V 0.33 tolerated(0.08) benign(0.002) TCGA-85-7697-01 11 51411514 51411514 A T OR4A5 Silent p.A294A 0.15 TCGA-85-7697-01 11 55433552 55433552 G A OR4C6 Missense_Mutation p.E304K 0.12 tolerated_low_confidence(0.92) benign(0.001) TCGA-85-7697-01 11 55681277 55681277 C A OR5W2 Missense_Mutation p.R261L 0.12 deleterious(0) probably_damaging(0.972) TCGA-85-7697-01 11 55944612 55944612 T G OR5J2 Silent p.A173A 0.11 TCGA-85-7697-01 11 56511277 56511277 G A OR9G4 Missense_Mutation p.P4L 0.21 tolerated_low_confidence(1) benign(0.007) TCGA-85-7697-01 11 57798989 57798989 C A OR6Q1 Missense_Mutation p.L189I 0.23 deleterious(0.04) probably_damaging(0.994) TCGA-85-7697-01 11 57971200 57971200 T A OR1S2 Missense_Mutation p.R152W 0.11 deleterious(0.02) possibly_damaging(0.823) TCGA-85-7697-01 11 5841714 5841714 T A OR52N2 Missense_Mutation p.L50H 0.26 deleterious(0) probably_damaging(0.986) TCGA-85-7697-01 11 58978915 58978915 G A MPEG1 Missense_Mutation p.S475L 0.15 deleterious(0.03) benign(0.014) TCGA-85-7697-01 11 5905999 5905999 C A OR52E4 Silent p.T159T 0.16 TCGA-85-7697-01 11 61250221 61250221 C A PPP1R32 Missense_Mutation p.R108S 0.23 deleterious(0.01) benign(0.022) TCGA-85-7697-01 11 6292011 6292011 C G CCKBR Silent p.V263V 0.22 TCGA-85-7697-01 11 64675078 64675078 C T ATG2A Missense_Mutation p.A856T 0.38 tolerated(0.74) benign(0.001) TCGA-85-7697-01 11 65349200 65349200 G A EHBP1L1 Missense_Mutation p.A353T 0.38 tolerated(0.05) possibly_damaging(0.717) TCGA-85-7697-01 11 68171068 68171068 A G LRP5 Missense_Mutation p.I568V 0.20 deleterious(0.04) benign(0.129) TCGA-85-7697-01 11 89896132 89896132 T A NAALAD2 Missense_Mutation p.H335Q 0.10 tolerated(0.06) benign(0.08) TCGA-85-7697-01 11 92703004 92703004 G T MTNR1B Missense_Mutation p.W38L 0.14 deleterious(0.03) probably_damaging(0.951) TCGA-85-7697-01 12 10312962 10312962 G A OLR1 Missense_Mutation p.P222S 0.41 tolerated(0.08) possibly_damaging(0.503) TCGA-85-7697-01 12 109539724 109539724 G - UNG Frame_Shift_Del p.G152Dfs*39 0.23 TCGA-85-7697-01 12 118651826 118651826 C G TAOK3 Missense_Mutation p.E245Q 0.07 deleterious(0.05) benign(0.292) TCGA-85-7697-01 12 119968832 119968832 G C CCDC60 Missense_Mutation p.W505C 0.10 deleterious(0) probably_damaging(1) TCGA-85-7697-01 12 121461927 121461927 C A OASL Missense_Mutation p.D305Y 0.21 deleterious(0) probably_damaging(1) TCGA-85-7697-01 12 133306604 133306604 C G ANKLE2 Missense_Mutation p.R715T 0.21 deleterious(0.04) benign(0.003) TCGA-85-7697-01 12 133372536 133372536 C G GOLGA3 Missense_Mutation p.E791Q 0.15 tolerated(0.54) benign(0.121) TCGA-85-7697-01 12 13716005 13716005 G A GRIN2B Silent p.P1389P 0.46 TCGA-85-7697-01 12 15103601 15103601 C A ARHGDIB Missense_Mutation p.D16Y 0.27 deleterious(0) possibly_damaging(0.8) TCGA-85-7697-01 12 20874840 20874840 G T SLCO1C1 Missense_Mutation p.W293L 0.40 deleterious(0.03) benign(0.348) TCGA-85-7697-01 12 20874841 20874841 G T SLCO1C1 Missense_Mutation p.W293C 0.42 tolerated(0.23) benign(0.143) TCGA-85-7697-01 12 21175801 21175801 G T SLCO1B7 Missense_Mutation p.G120W 0.32 deleterious(0) probably_damaging(0.917) TCGA-85-7697-01 12 21329814 21329814 C T SLCO1B1 Missense_Mutation p.P155L 0.34 tolerated(0.55) benign(0.029) TCGA-85-7697-01 12 2721110 2721110 C A CACNA1C Silent p.I1273I 0.22 TCGA-85-7697-01 12 43945055 43945055 A T ADAMTS20 Missense_Mutation p.L37Q 0.15 deleterious(0) probably_damaging(1) TCGA-85-7697-01 12 49428450 49428450 C A KMT2D Splice_Site p.X3452_splice 0.17 TCGA-85-7697-01 12 50190376 50190376 G A NCKAP5L Missense_Mutation p.H423Y 0.11 tolerated_low_confidence(0.3) benign(0.002) TCGA-85-7697-01 12 54789999 54789999 A T ITGA5 3'UTR 0.25 TCGA-85-7697-01 12 62790118 62790118 C T USP15 Missense_Mutation p.P872S 0.08 tolerated(0.23) benign(0.075) TCGA-85-7697-01 12 63042255 63042255 C T PPM1H 3'UTR 0.27 TCGA-85-7697-01 12 72366455 72366455 C A TPH2 Missense_Mutation p.D255E 0.14 deleterious(0.01) probably_damaging(0.988) TCGA-85-7697-01 12 78513191 78513191 G T NAV3 Missense_Mutation p.G1072V 0.11 deleterious(0.02) benign(0.012) TCGA-85-7697-01 12 78574781 78574781 G T NAV3 Missense_Mutation p.G1861V 0.10 deleterious(0) probably_damaging(1) TCGA-85-7697-01 12 94631527 94631527 G T PLXNC1 Missense_Mutation p.A690S 0.13 deleterious(0.04) possibly_damaging(0.876) TCGA-85-7697-01 12 96300167 96300167 C T CCDC38 Missense_Mutation p.E123K 0.23 deleterious(0) probably_damaging(0.959) TCGA-85-7697-01 13 32313689 32313689 A G RXFP2 5'UTR 0.32 TCGA-85-7697-01 13 32698994 32698994 G C FRY Missense_Mutation p.G233A 0.09 deleterious(0.03) probably_damaging(0.992) TCGA-85-7697-01 13 32915015 32915015 G C BRCA2 Missense_Mutation p.E2175Q 0.08 tolerated(0.07) probably_damaging(0.947) TCGA-85-7697-01 13 41943360 41943362 GAA - NAA16 In_Frame_Del p.E634del 0.27 TCGA-85-7697-01 14 106053974 106053974 G T IGHA2 Missense_Mutation p.P182Q 0.16 tolerated(0.34) benign(0.125) TCGA-85-7697-01 14 106478149 106478149 A G IGHV4-4 Silent p.S103S 0.05 TCGA-85-7697-01 14 106733194 106733194 C A IGHV1-24 Nonsense_Mutation p.E101* 0.21 TCGA-85-7697-01 14 20389131 20389131 G C OR4K5 Missense_Mutation p.R122S 0.07 deleterious(0) possibly_damaging(0.881) TCGA-85-7697-01 14 36004578 36004578 G A INSM2 Missense_Mutation p.G374R 0.12 tolerated(0.53) benign(0.006) TCGA-85-7697-01 14 45665699 45665699 A C FANCM Missense_Mutation p.S1889R 0.07 deleterious(0.01) possibly_damaging(0.793) TCGA-85-7697-01 14 92491719 92491719 C T TRIP11 Missense_Mutation p.E83K 0.23 deleterious(0) possibly_damaging(0.803) TCGA-85-7697-01 14 93651631 93651631 G T TMEM251 5'UTR 0.33 TCGA-85-7697-01 14 94156542 94156542 G T UNC79 Missense_Mutation p.V2251L 0.15 tolerated(1) benign(0.006) TCGA-85-7697-01 15 25322261 25322261 A G SNORD116-12 RNA 0.20 TCGA-85-7697-01 15 34395450 34395450 G C PGBD4 Missense_Mutation p.V240L 0.10 tolerated(0.33) benign(0.061) TCGA-85-7697-01 15 39893092 39893092 T C FSIP1 Missense_Mutation p.K579E 0.16 tolerated_low_confidence(0.23) benign(0.006) TCGA-85-7697-01 15 41188207 41188207 G C VPS18 Missense_Mutation p.E55Q 0.13 tolerated(0.23) benign(0.008) TCGA-85-7697-01 15 43922891 43922891 C T CATSPER2 3'UTR 0.08 TCGA-85-7697-01 15 48063286 48063286 A G SEMA6D Silent p.S842S 0.08 TCGA-85-7697-01 15 59113996 59113996 C T FAM63B Silent p.D401D 0.14 TCGA-85-7697-01 15 65693182 65693182 G A IGDCC4 Missense_Mutation p.S268L 0.06 tolerated(0.06) benign(0.033) TCGA-85-7697-01 15 74536470 74536470 C T CCDC33 Missense_Mutation p.P56S 0.08 deleterious(0) probably_damaging(0.932) TCGA-85-7697-01 16 2816357 2816357 G T SRRM2 Missense_Mutation p.R1943L 0.11 unknown(0) TCGA-85-7697-01 16 50136309 50136309 C T HEATR3 Missense_Mutation p.S628F 0.16 tolerated(0.19) benign(0.332) TCGA-85-7697-01 16 57719683 57719683 G T GPR97 Missense_Mutation p.R462L 0.21 deleterious(0.02) benign(0.087) TCGA-85-7697-01 16 69782845 69782845 G T NOB1 Nonsense_Mutation p.C234* 0.45 TCGA-85-7697-01 17 18675764 18675764 G C FBXW10 Missense_Mutation p.Q682H 0.04 deleterious(0) probably_damaging(0.993) TCGA-85-7697-01 17 1968950 1968950 C - SMG6 Frame_Shift_Del p.A1287Pfs*42 0.15 TCGA-85-7697-01 17 38911436 38911436 A T KRT25 Missense_Mutation p.F30I 0.14 deleterious(0) benign(0.117) TCGA-85-7697-01 17 4849169 4849169 C A PFN1 3'UTR 0.28 TCGA-85-7697-01 17 49710901 49710902 - T CA10 Frame_Shift_Ins p.N300Kfs*22 0.09 TCGA-85-7697-01 17 51902337 51902337 A G KIF2B Missense_Mutation p.K648R 0.07 deleterious(0.01) probably_damaging(0.971) TCGA-85-7697-01 17 57049513 57049513 A T PPM1E Silent p.T331T 0.12 TCGA-85-7697-01 17 58137338 58137338 G A HEATR6 Silent p.I512I 0.08 TCGA-85-7697-01 17 75187342 75187342 A - SEC14L1 Frame_Shift_Del p.Y98Lfs*35 0.08 TCGA-85-7697-01 17 7578398 7578398 G - TP53 Frame_Shift_Del p.H178Tfs*69 0.10 TCGA-85-7697-01 17 8789575 8789575 G T PIK3R5 Missense_Mutation p.S700Y 0.16 deleterious(0) probably_damaging(0.934) TCGA-85-7697-01 18 14543165 14543165 G A POTEC 5'Flank 0.14 TCGA-85-7697-01 18 21057232 21057232 G T RIOK3 Missense_Mutation p.Q448H 0.21 tolerated(0.18) benign(0.008) TCGA-85-7697-01 19 12430113 12430113 T C ZNF563 Silent p.R242R 0.04 TCGA-85-7697-01 19 12924334 12924334 T C RNASEH2A 3'UTR 0.08 TCGA-85-7697-01 19 13397441 13397441 G C CACNA1A Missense_Mutation p.S1143R 0.18 possibly_damaging(0.883) TCGA-85-7697-01 19 14077322 14077322 C A RFX1 Silent p.V624V 0.26 TCGA-85-7697-01 19 15996796 15996797 - T CYP4F2 Frame_Shift_Ins p.E352Gfs*15 0.11 TCGA-85-7697-01 19 18245721 18245721 A G MAST3 Missense_Mutation p.Y571C 0.21 deleterious(0) probably_damaging(0.995) TCGA-85-7697-01 19 40366073 40366073 C T FCGBP Missense_Mutation p.A4721T 0.20 probably_damaging(0.966) TCGA-85-7697-01 19 42795148 42795148 A T CIC Missense_Mutation p.H743L 0.14 possibly_damaging(0.84) TCGA-85-7697-01 19 43382392 43382392 G T PSG1 Missense_Mutation p.Q35K 0.12 deleterious(0.04) benign(0.107) TCGA-85-7697-01 19 44661878 44661878 G A ZNF234 Missense_Mutation p.C570Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-85-7697-01 19 4550830 4550830 C A SEMA6B Missense_Mutation p.D368Y 0.26 deleterious(0) probably_damaging(0.966) TCGA-85-7697-01 19 46002587 46002587 C A PPM1N Missense_Mutation p.A286E 0.15 deleterious(0) possibly_damaging(0.687) TCGA-85-7697-01 19 53117146 53117146 C G ZNF83 Silent p.R224R 0.07 TCGA-85-7697-01 19 53208746 53208746 C T ZNF611 Missense_Mutation p.R521H 0.09 tolerated(0.62) benign(0.001) TCGA-85-7697-01 19 55285062 55285062 C - KIR2DL1 Frame_Shift_Del p.P117Lfs*5 0.09 TCGA-85-7697-01 19 56473574 56473574 G A NLRP8 Silent p.R728R 0.17 TCGA-85-7697-01 19 56538902 56538902 G T NLRP5 Nonsense_Mutation p.E435* 0.18 TCGA-85-7697-01 19 57641677 57641677 C G USP29 Missense_Mutation p.T545S 0.09 deleterious(0) probably_damaging(0.983) TCGA-85-7697-01 19 57901416 57901416 T C AC003002.6 5'UTR 0.12 TCGA-85-7697-01 19 58084791 58084791 A C ZNF416 Missense_Mutation p.C161G 0.20 tolerated(0.05) benign(0.001) TCGA-85-7697-01 19 58085004 58085004 G C ZNF416 Missense_Mutation p.Q90E 0.16 tolerated(0.06) benign(0.265) TCGA-85-7697-01 19 6897163 6897163 T C EMR1 Missense_Mutation p.I81T 0.17 deleterious(0.03) possibly_damaging(0.756) TCGA-85-7697-01 19 8619436 8619436 G C MYO1F Missense_Mutation p.P84R 0.22 deleterious(0) probably_damaging(1) TCGA-85-7697-01 19 9088972 9088972 A T MUC16 Missense_Mutation p.M948K 0.12 unknown(0) TCGA-85-7697-01 1 10384910 10384910 G T KIF1B Missense_Mutation p.D832Y 0.20 deleterious(0) probably_damaging(1) TCGA-85-7697-01 1 111862928 111862928 C T CHIA Missense_Mutation p.S424L 0.16 tolerated(0.25) benign(0.017) TCGA-85-7697-01 1 12943114 12943114 G - PRAMEF4 Frame_Shift_Del p.T35Qfs*20 0.17 TCGA-85-7697-01 1 152277249 152277249 G A FLG Silent p.S3371S 0.05 TCGA-85-7697-01 1 156268429 156268429 C T VHLL 3'UTR 0.50 TCGA-85-7697-01 1 156756826 156756826 G A PRCC Missense_Mutation p.D315N 0.04 tolerated(0.29) possibly_damaging(0.652) TCGA-85-7697-01 1 157494261 157494261 G T FCRL5 Missense_Mutation p.L683M 0.39 tolerated(0.12) probably_damaging(0.942) TCGA-85-7697-01 1 157514273 157514273 G T FCRL5 Missense_Mutation p.T208N 0.09 deleterious(0.01) probably_damaging(0.925) TCGA-85-7697-01 1 157804430 157804430 A G CD5L Missense_Mutation p.V162A 0.11 deleterious(0.03) possibly_damaging(0.492) TCGA-85-7697-01 1 158669535 158669535 T C OR6K2 Missense_Mutation p.K303R 0.09 tolerated(0.72) benign(0.005) TCGA-85-7697-01 1 160465994 160465994 G T SLAMF6 Missense_Mutation p.P80Q 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-85-7697-01 1 162344204 162344204 C A C1orf111 Silent p.S140S 0.29 TCGA-85-7697-01 1 170927657 170927657 C A MROH9 Missense_Mutation p.S43Y 0.07 deleterious(0.01) possibly_damaging(0.61) TCGA-85-7697-01 1 179604828 179604828 C G TDRD5 Silent p.L442L 0.07 TCGA-85-7697-01 1 182026895 182026895 G A ZNF648 Missense_Mutation p.S84F 0.20 tolerated(0.07) benign(0.005) TCGA-85-7697-01 1 186303513 186303513 G C TPR Missense_Mutation p.P1709R 0.09 possibly_damaging(0.804) TCGA-85-7697-01 1 193038245 193038245 G A TROVE2 Missense_Mutation p.D21N 0.05 tolerated(0.09) benign(0.077) TCGA-85-7697-01 1 19518834 19518834 C A UBR4 Missense_Mutation p.L414F 0.16 probably_damaging(0.942) TCGA-85-7697-01 1 207297572 207297572 A T C4BPA Missense_Mutation p.E189D 0.40 tolerated(1) benign(0.018) TCGA-85-7697-01 1 215848419 215848419 G A USH2A Silent p.P4278P 0.06 TCGA-85-7697-01 1 215963623 215963623 A T USH2A Silent p.G3320G 0.07 TCGA-85-7697-01 1 216373009 216373009 T G USH2A Silent p.T1257T 0.30 TCGA-85-7697-01 1 220369722 220369722 G A RAB3GAP2 Missense_Mutation p.P277L 0.21 deleterious(0.04) benign(0.316) TCGA-85-7697-01 1 221875934 221875934 C T DUSP10 Silent p.L423L 0.15 TCGA-85-7697-01 1 229772475 229772475 C G URB2 Silent p.A705A 0.32 TCGA-85-7697-01 1 230883365 230883365 C G CAPN9 Silent p.T41T 0.05 TCGA-85-7697-01 1 247921595 247921595 G T OR1C1 Silent p.T38T 0.44 TCGA-85-7697-01 1 248224220 248224220 G A OR2L3 Silent p.K79K 0.28 TCGA-85-7697-01 1 248263624 248263624 C A OR2L13 3'UTR 0.29 TCGA-85-7697-01 1 248524989 248524989 C A OR2T4 Missense_Mutation p.A36D 0.51 tolerated(0.11) benign(0.066) TCGA-85-7697-01 1 3102708 3102708 T C PRDM16 Silent p.N19N 0.21 TCGA-85-7697-01 1 32568407 32568407 T A TMEM39B 3'UTR 0.27 TCGA-85-7697-01 1 34037186 34037186 G T CSMD2 Missense_Mutation p.R2637S 0.18 tolerated(0.3) benign(0.076) TCGA-85-7697-01 1 36921511 36921511 G T MRPS15 Missense_Mutation p.Q218K 0.09 tolerated(0.11) benign(0.008) TCGA-85-7697-01 1 57383390 57383390 G A C8A 3'UTR 0.11 TCGA-85-7697-01 1 61848946 61848946 G C NFIA Missense_Mutation p.K373N 0.15 deleterious(0.02) benign(0.444) TCGA-85-7697-01 1 62676138 62676138 G C L1TD1 Missense_Mutation p.M564I 0.18 tolerated(0.67) benign(0) TCGA-85-7697-01 1 71477990 71477990 G T PTGER3 Missense_Mutation p.Q359K 0.15 tolerated(0.48) possibly_damaging(0.876) TCGA-85-7697-01 1 75037970 75037970 C A C1orf173 Missense_Mutation p.G1142W 0.16 deleterious(0) probably_damaging(0.999) TCGA-85-7697-01 1 75766294 75766294 C T SLC44A5 Intron 0.14 TCGA-85-7697-01 1 76878059 76878059 A G ST6GALNAC3 Missense_Mutation p.S194G 0.12 benign(0.186) TCGA-85-7697-01 1 79392625 79392625 G T ELTD1 Missense_Mutation p.N343K 0.15 tolerated(0.33) benign(0.02) TCGA-85-7697-01 1 82402506 82402506 G T LPHN2 Nonsense_Mutation p.E128* 0.25 TCGA-85-7697-01 1 91985707 91985707 G A CDC7 Missense_Mutation p.G401S 0.15 deleterious(0) probably_damaging(1) TCGA-85-7697-01 20 13971237 13971237 C A SEL1L2 5'UTR 0.25 TCGA-85-7697-01 20 21686968 21686968 C T PAX1 Intron 0.27 TCGA-85-7697-01 20 34797795 34797795 C T EPB41L1 Missense_Mutation p.S685F 0.17 deleterious(0.04) benign(0.06) TCGA-85-7697-01 20 34828381 34828381 G A AAR2 Silent p.E197E 0.11 TCGA-85-7697-01 20 43559117 43559117 G T PABPC1L Missense_Mutation p.G330V 0.15 deleterious(0) probably_damaging(0.931) TCGA-85-7697-01 20 49508347 49508347 A G ADNP Silent p.G968G 0.05 TCGA-85-7697-01 20 5925475 5925475 C T TRMT6 Silent p.L114L 0.10 TCGA-85-7697-01 20 62323174 62323174 G C RTEL1 Missense_Mutation p.R903P 0.10 deleterious(0) probably_damaging(0.956) TCGA-85-7697-01 20 62407138 62407138 G A ZBTB46 Missense_Mutation p.A372V 0.15 tolerated(0.29) benign(0.283) TCGA-85-7697-01 20 76867 76867 T A DEFB125 Missense_Mutation p.S94T 0.10 tolerated(0.44) possibly_damaging(0.483) TCGA-85-7697-01 21 19744587 19744587 G T TMPRSS15 Missense_Mutation p.T196K 0.16 tolerated(0.43) benign(0.01) TCGA-85-7697-01 21 34927505 34927505 C G SON Missense_Mutation p.R1990G 0.08 unknown(0) TCGA-85-7697-01 21 41416154 41416154 C A DSCAM Missense_Mutation p.R1745L 0.18 deleterious(0) probably_damaging(0.965) TCGA-85-7697-01 21 43795874 43795874 A C TMPRSS3 Missense_Mutation p.V433G 0.13 deleterious(0) probably_damaging(0.999) TCGA-85-7697-01 21 47777079 47777079 A C PCNT Missense_Mutation p.E709D 0.09 possibly_damaging(0.636) TCGA-85-7697-01 22 17990907 17990907 C T CECR2 Silent p.S270S 0.11 TCGA-85-7697-01 22 20050930 20050930 G A TANGO2 Silent p.A225A 0.17 TCGA-85-7697-01 22 30689661 30689661 C A TBC1D10A Missense_Mutation p.Q350H 0.12 deleterious(0.01) benign(0.027) TCGA-85-7697-01 22 41650424 41650424 T A RANGAP1 Missense_Mutation p.D383V 0.11 tolerated(0.15) benign(0.003) TCGA-85-7697-01 22 46653800 46653800 A G PKDREJ Missense_Mutation p.L1807P 0.17 tolerated(0.12) benign(0.058) TCGA-85-7697-01 2 108488691 108488691 A G RGPD4 Missense_Mutation p.I1411V 0.14 tolerated(0.06) benign(0.256) TCGA-85-7697-01 2 109527367 109527367 C A EDAR Intron 0.11 TCGA-85-7697-01 2 113089995 113089995 G T ZC3H6 Missense_Mutation p.R1167I 0.15 tolerated(0.16) possibly_damaging(0.553) TCGA-85-7697-01 2 120799639 120799639 G A EPB41L5 Missense_Mutation p.E80K 0.09 deleterious(0) probably_damaging(0.992) TCGA-85-7697-01 2 160755555 160755555 G C LY75-CD302 Missense_Mutation p.T37S 0.04 deleterious(0.04) probably_damaging(0.953) TCGA-85-7697-01 2 163291826 163291826 G A KCNH7 Silent p.D612D 0.22 TCGA-85-7697-01 2 166210828 166210828 T A SCN2A Missense_Mutation p.F1016I 0.12 tolerated(0.08) benign(0.003) TCGA-85-7697-01 2 179454028 179454028 G T TTN Missense_Mutation p.D20808E 0.12 TCGA-85-7697-01 2 187713738 187713738 A T ZSWIM2 Silent p.T40T 0.15 TCGA-85-7697-01 2 190593009 190593009 T C ANKAR Missense_Mutation p.V965A 0.07 deleterious(0.03) benign(0.145) TCGA-85-7697-01 2 201685983 201685983 G A BZW1 Missense_Mutation p.E427K 0.09 tolerated(0.28) possibly_damaging(0.588) TCGA-85-7697-01 2 209025587 209025587 C G CRYGA Missense_Mutation p.D156H 0.09 deleterious(0) probably_damaging(0.997) TCGA-85-7697-01 2 209028043 209028043 T C CRYGA Missense_Mutation p.Y46C 0.08 deleterious(0.01) probably_damaging(0.947) TCGA-85-7697-01 2 210559585 210559585 C A MAP2 Nonsense_Mutation p.Y897* 0.14 TCGA-85-7697-01 2 21233956 21233956 A G APOB Silent p.Y1928Y 0.09 TCGA-85-7697-01 2 216964987 216964987 T C TMEM169 Missense_Mutation p.Y206H 0.17 deleterious(0.01) benign(0.383) TCGA-85-7697-01 2 225704678 225704678 C G DOCK10 Missense_Mutation p.V925L 0.22 deleterious(0.03) benign(0.002) TCGA-85-7697-01 2 228882636 228882636 G T SPHKAP Silent p.S978S 0.13 TCGA-85-7697-01 2 32605267 32605267 G C BIRC6 Missense_Mutation p.S185T 0.18 benign(0.058) TCGA-85-7697-01 2 33787887 33787887 C T RASGRP3 3'UTR 0.27 TCGA-85-7697-01 2 47600957 47600957 A G EPCAM Silent p.K65K 0.14 TCGA-85-7697-01 2 48896902 48896902 T C STON1-GTF2A1L Silent p.D1044D 0.13 TCGA-85-7697-01 2 55254506 55254506 G A RTN4 Silent p.A243A 0.13 TCGA-85-7697-01 2 69304588 69304588 G T ANTXR1 Missense_Mutation p.G204C 0.08 deleterious(0) probably_damaging(0.999) TCGA-85-7697-01 2 71801415 71801415 G T DYSF Missense_Mutation p.A1106S 0.21 tolerated(0.36) benign(0.257) TCGA-85-7697-01 2 79347968 79347968 G A REG1A 5'UTR 0.21 TCGA-85-7697-01 2 98852882 98852882 C A VWA3B Missense_Mutation p.L820M 0.20 tolerated(0.21) possibly_damaging(0.519) TCGA-85-7697-01 3 108572587 108572587 G T TRAT1 Missense_Mutation p.A142S 0.15 tolerated(0.43) benign(0.048) TCGA-85-7697-01 3 108672518 108672518 G T GUCA1C Missense_Mutation p.P31Q 0.16 deleterious(0) probably_damaging(0.997) TCGA-85-7697-01 3 108677875 108677875 T G MORC1 Missense_Mutation p.K964N 0.29 deleterious_low_confidence(0.04) benign(0.409) TCGA-85-7697-01 3 108677877 108677877 T A MORC1 Nonsense_Mutation p.K964* 0.30 TCGA-85-7697-01 3 108778669 108778669 G T MORC1 Missense_Mutation p.L339I 0.26 tolerated(0.09) probably_damaging(0.999) TCGA-85-7697-01 3 113677522 113677522 C T ZDHHC23 Intron 0.27 TCGA-85-7697-01 3 122646636 122646636 C A SEMA5B Splice_Site p.X338_splice 0.22 TCGA-85-7697-01 3 140178514 140178514 G A CLSTN2 Silent p.L375L 0.36 TCGA-85-7697-01 3 14813664 14813664 C T C3orf20 Silent p.A862A 0.29 TCGA-85-7697-01 3 159995416 159995416 T C IFT80 Missense_Mutation p.N627D 0.09 tolerated(0.58) benign(0.002) TCGA-85-7697-01 3 166958696 166958696 C A ZBBX Missense_Mutation p.R802I 0.20 deleterious(0.01) possibly_damaging(0.668) TCGA-85-7697-01 3 168269692 168269692 G A MIR551B RNA 0.18 TCGA-85-7697-01 3 168849288 168849288 G A MECOM Missense_Mutation p.P57L 0.19 deleterious(0.02) possibly_damaging(0.643) TCGA-85-7697-01 3 169644952 169644952 C T SAMD7 Missense_Mutation p.P301L 0.15 tolerated(0.15) benign(0.004) TCGA-85-7697-01 3 179597847 179597847 G T PEX5L Silent p.A125A 0.11 TCGA-85-7697-01 3 183883931 183883931 G A DVL3 Missense_Mutation p.G261S 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-85-7697-01 3 196281200 196281200 T G WDR53 Missense_Mutation p.N320T 0.04 tolerated(0.58) benign(0) TCGA-85-7697-01 3 49928643 49928643 C T MST1R Missense_Mutation p.A1211T 0.12 deleterious(0) probably_damaging(1) TCGA-85-7697-01 3 53707839 53707839 A C CACNA1D Missense_Mutation p.S406R 0.14 deleterious(0) probably_damaging(0.997) TCGA-85-7697-01 3 88040516 88040516 G T HTR1F Missense_Mutation p.R206I 0.16 tolerated(0.45) benign(0.278) TCGA-85-7697-01 4 119754871 119754871 A C SEC24D 5'UTR 0.11 TCGA-85-7697-01 4 134072837 134072837 C A PCDH10 Silent p.T514T 0.33 TCGA-85-7697-01 4 145038046 145038046 C A GYPA Silent p.T106T 0.40 TCGA-85-7697-01 4 153249408 153249408 A T FBXW7 Nonsense_Mutation p.L457* 0.38 TCGA-85-7697-01 4 164247278 164247278 G T NPY1R Silent p.I143I 0.31 TCGA-85-7697-01 4 184129113 184129113 G T WWC2 Silent p.T83T 0.36 TCGA-85-7697-01 4 5399944 5399944 C G STK32B Missense_Mutation p.P149A 0.20 deleterious(0) possibly_damaging(0.832) TCGA-85-7697-01 4 70715221 70715221 T A SULT1E1 Missense_Mutation p.M144L 0.18 deleterious(0) benign(0.421) TCGA-85-7697-01 4 74276109 74276109 A C ALB Missense_Mutation p.E232D 0.08 tolerated(0.16) benign(0.004) TCGA-85-7697-01 4 89671662 89671662 G T FAM13A Missense_Mutation p.P618H 0.12 tolerated(0.4) probably_damaging(1) TCGA-85-7697-01 4 95506774 95506774 A G PDLIM5 Missense_Mutation p.S154G 0.30 tolerated(0.1) benign(0.119) TCGA-85-7697-01 5 129520499 129520499 T A CHSY3 Missense_Mutation p.V555E 0.10 deleterious(0) probably_damaging(0.967) TCGA-85-7697-01 5 140175168 140175168 G A PCDHA2 Missense_Mutation p.E207K 0.14 tolerated_low_confidence(0.06) benign(0.027) TCGA-85-7697-01 5 140215150 140215150 C T PCDHA7 Silent p.P394P 0.04 TCGA-85-7697-01 5 140736524 140736524 A T PCDHGA4 Missense_Mutation p.Y586F 0.04 deleterious_low_confidence(0) possibly_damaging(0.656) TCGA-85-7697-01 5 140810339 140810339 C T PCDHGA12 Nonsense_Mutation p.R5* 0.06 TCGA-85-7697-01 5 140812223 140812223 C T PCDHGA12 Silent p.L633L 0.12 TCGA-85-7697-01 5 156592883 156592884 - T FAM71B Frame_Shift_Ins p.H99Qfs*38 0.14 TCGA-85-7697-01 5 161520860 161520860 A G GABRG2 Missense_Mutation p.D45G 0.10 deleterious(0) probably_damaging(0.998) TCGA-85-7697-01 5 24488018 24488018 G A CDH10 Silent p.N707N 0.17 TCGA-85-7697-01 5 39341395 39341395 C T C9 Missense_Mutation p.G110D 0.15 deleterious(0) probably_damaging(0.999) TCGA-85-7697-01 5 52386471 52386471 C G ITGA2 3'UTR 0.11 TCGA-85-7697-01 5 77423968 77423968 C A AP3B1 Missense_Mutation p.Q618H 0.10 deleterious(0.01) benign(0.186) TCGA-85-7697-01 5 7773174 7773174 G T ADCY2 Missense_Mutation p.A782S 0.13 tolerated(0.62) benign(0.01) TCGA-85-7697-01 6 111498670 111498670 C T SLC16A10 Silent p.G248G 0.15 TCGA-85-7697-01 6 126080383 126080383 G T HEY2 Missense_Mutation p.R150L 0.21 deleterious(0) possibly_damaging(0.693) TCGA-85-7697-01 6 130505303 130505303 A G SAMD3 Missense_Mutation p.V200A 0.13 tolerated(0.14) probably_damaging(0.998) TCGA-85-7697-01 6 136597022 136597022 G C BCLAF1 Silent p.V547V 0.05 TCGA-85-7697-01 6 146276101 146276101 T C SHPRH Missense_Mutation p.T120A 0.16 tolerated_low_confidence(0.42) benign(0.001) TCGA-85-7697-01 6 150386548 150386548 C A ULBP3 Missense_Mutation p.R205M 0.11 tolerated(1) benign(0.027) TCGA-85-7697-01 6 154414617 154414617 G T OPRM1 Intron 0.11 TCGA-85-7697-01 6 161139829 161139829 G T PLG Missense_Mutation p.C352F 0.19 deleterious(0) probably_damaging(0.973) TCGA-85-7697-01 6 167791493 167791493 C - TCP10 Frame_Shift_Del p.A123Pfs*13 0.12 TCGA-85-7697-01 6 25845701 25845701 G C SLC17A3 Missense_Mutation p.A469G 0.14 tolerated(0.1) benign(0.053) TCGA-85-7697-01 6 26370573 26370573 G A BTN3A2 Missense_Mutation p.E153K 0.26 deleterious(0.02) benign(0.254) TCGA-85-7697-01 6 27220668 27220668 C T PRSS16 Nonsense_Mutation p.Q364* 0.11 TCGA-85-7697-01 6 35436793 35436793 G T RPL10A Silent p.S50S 0.25 TCGA-85-7697-01 6 38831680 38831680 T G DNAH8 Missense_Mutation p.F1897L 0.04 probably_damaging(1) TCGA-85-7697-01 6 41168899 41168899 C A TREML2 5'UTR 0.12 TCGA-85-7697-01 6 42211099 42211099 C T TRERF1 Missense_Mutation p.V916M 0.29 deleterious(0) possibly_damaging(0.608) TCGA-85-7697-01 6 42626040 42626040 A G UBR2 Silent p.E1015E 0.16 TCGA-85-7697-01 6 43308231 43308231 C G ZNF318 Missense_Mutation p.D1169H 0.26 possibly_damaging(0.885) TCGA-85-7697-01 6 43413612 43413612 A C ABCC10 Silent p.P1102P 0.22 TCGA-85-7697-01 6 45515092 45515092 A G RUNX2 3'UTR 0.13 TCGA-85-7697-01 6 47641225 47641225 C T GPR111 Intron 0.06 TCGA-85-7697-01 6 56485315 56485315 T G DST Intron 0.04 TCGA-85-7697-01 6 66044949 66044949 G T EYS Missense_Mutation p.L564M 0.24 tolerated(0.23) benign(0.009) TCGA-85-7697-01 6 75848617 75848617 C T COL12A1 Missense_Mutation p.G1673E 0.09 probably_damaging(1) TCGA-85-7697-01 7 100552276 100552276 G A MUC3A Missense_Mutation p.D343N 0.05 tolerated(0.24) benign(0.201) TCGA-85-7697-01 7 103198431 103198431 T G RELN Silent p.S1865S 0.21 TCGA-85-7697-01 7 107848077 107848077 G T NRCAM Missense_Mutation p.Q368K 0.18 tolerated(1) benign(0.001) TCGA-85-7697-01 7 123508459 123508459 A G HYAL4 Silent p.Q44Q 0.14 TCGA-85-7697-01 7 137263037 137263037 T A DGKI Silent p.R559R 0.17 TCGA-85-7697-01 7 137791446 137791446 C A AKR1D1 Silent p.T224T 0.14 TCGA-85-7697-01 7 138824750 138824750 G A TTC26 Missense_Mutation p.A117T 0.12 deleterious(0.04) benign(0.046) TCGA-85-7697-01 7 143748410 143748410 T C OR2A5 Missense_Mutation p.W306R 0.06 tolerated(0.36) benign(0.001) TCGA-85-7697-01 7 150270255 150270255 C T GIMAP4 3'UTR 0.33 TCGA-85-7697-01 7 154598807 154598807 C A DPP6 Missense_Mutation p.L551M 0.10 deleterious(0.03) probably_damaging(0.924) TCGA-85-7697-01 7 1588142 1588158 CTGCCCCACACACCTTG - TMEM184A Splice_Site p.X271_splice 0.12 TCGA-85-7697-01 7 22196454 22196454 C G RAPGEF5 Missense_Mutation p.R384T 0.12 deleterious(0.04) possibly_damaging(0.632) TCGA-85-7697-01 7 31736717 31736717 C A PPP1R17 Missense_Mutation p.S125Y 0.15 deleterious_low_confidence(0) possibly_damaging(0.698) TCGA-85-7697-01 7 31829788 31829788 A G PDE1C Intron 0.06 TCGA-85-7697-01 7 36895207 36895207 C A ELMO1 Silent p.P711P 0.10 TCGA-85-7697-01 7 3861144 3861144 A G SDK1 Missense_Mutation p.Y259C 0.27 deleterious(0) probably_damaging(1) TCGA-85-7697-01 7 4277379 4277379 G A SDK1 Silent p.L2031L 0.17 TCGA-85-7697-01 7 44578824 44578824 C A NPC1L1 Missense_Mutation p.R391L 0.18 tolerated(0.08) benign(0.312) TCGA-85-7697-01 7 44579159 44579159 G A NPC1L1 Silent p.G279G 0.27 TCGA-85-7697-01 7 48319165 48319165 G T ABCA13 Missense_Mutation p.D2792Y 0.26 possibly_damaging(0.635) TCGA-85-7697-01 7 55221829 55221829 C T EGFR Silent p.C291C 0.15 TCGA-85-7697-01 7 71130456 71130456 C A WBSCR17 Silent p.R381R 0.11 TCGA-85-7697-01 7 87022117 87022117 A G CROT Missense_Mutation p.T554A 0.23 tolerated(0.16) benign(0.024) TCGA-85-7697-01 7 92134169 92134169 C G PEX1 Missense_Mutation p.E650Q 0.12 tolerated(0.13) possibly_damaging(0.463) TCGA-85-7697-01 7 98951580 98951580 G A ARPC1A Silent p.T183T 0.15 TCGA-85-7697-01 8 100673686 100673686 A G VPS13B Missense_Mutation p.T2030A 0.11 deleterious(0.01) benign(0.004) TCGA-85-7697-01 8 10469518 10469518 T A RP1L1 Missense_Mutation p.Q697L 0.22 benign(0.012) TCGA-85-7697-01 8 110477110 110477110 T A PKHD1L1 Silent p.I2683I 0.16 TCGA-85-7697-01 8 113246683 113246683 G C CSMD3 Missense_Mutation p.R3551G 0.13 deleterious(0.01) benign(0.269) TCGA-85-7697-01 8 113326281 113326281 C T CSMD3 Missense_Mutation p.G2517E 0.12 deleterious(0) probably_damaging(0.944) TCGA-85-7697-01 8 16026304 16026304 G T MSR1 Missense_Mutation p.T98K 0.17 tolerated(0.85) benign(0.051) TCGA-85-7697-01 8 25136107 25136107 G - DOCK5 Frame_Shift_Del p.G83Afs*25 0.27 TCGA-85-7697-01 8 48790331 48790331 C T PRKDC Missense_Mutation p.V1772I 0.14 benign(0.012) TCGA-85-7697-01 8 62212834 62212834 C A CLVS1 Missense_Mutation p.Q150K 0.17 tolerated(0.28) possibly_damaging(0.796) TCGA-85-7697-01 8 63939769 63939769 C A GGH Missense_Mutation p.A111S 0.12 tolerated(0.12) possibly_damaging(0.472) TCGA-85-7697-01 8 7717868 7717868 G T SPAG11A Intron 0.32 TCGA-85-7697-01 8 77745584 77745584 A T ZFHX4 Silent p.S1112S 0.12 TCGA-85-7697-01 8 77768272 77768272 G T ZFHX4 Missense_Mutation p.V3039F 0.10 probably_damaging(0.934) TCGA-85-7697-01 8 81905437 81905437 C T PAG1 Missense_Mutation p.G9D 0.17 tolerated(0.16) benign(0.079) TCGA-85-7697-01 8 91937774 91937774 C A NECAB1 Missense_Mutation p.A169D 0.13 tolerated(0.37) benign(0.055) TCGA-85-7697-01 9 117852998 117852998 G A TNC Silent p.F100F 0.15 TCGA-85-7697-01 9 136913459 136913459 G - BRD3 Frame_Shift_Del p.R278Gfs*84 0.43 TCGA-85-7697-01 9 139286542 139286542 C T SNAPC4 Missense_Mutation p.S276N 0.31 tolerated(0.06) benign(0.071) TCGA-85-7697-01 9 140137946 140137946 C G TUBB4B Missense_Mutation p.Q426E 0.06 deleterious_low_confidence(0.04) probably_damaging(0.985) TCGA-85-7697-01 9 140437123 140437123 C T PNPLA7 Missense_Mutation p.G213R 0.25 deleterious(0) possibly_damaging(0.534) TCGA-85-7697-01 9 17309228 17309228 G T CNTLN Missense_Mutation p.S440I 0.19 tolerated(0.2) benign(0.011) TCGA-85-7697-01 9 21971054 21971054 C - CDKN2A Frame_Shift_Del p.A102Rfs*44 0.17 TCGA-85-7697-01 9 78682906 78682906 C G PCSK5 Missense_Mutation p.A223G 0.19 deleterious(0) possibly_damaging(0.612) TCGA-85-7697-01 X 101096898 101096898 G C NXF5 Missense_Mutation p.I33M 0.28 deleterious(0.01) probably_damaging(0.93) TCGA-85-7697-01 X 101909040 101909040 G T GPRASP1 Nonsense_Mutation p.E67* 0.36 TCGA-85-7697-01 X 103497503 103497503 T A ESX1 Missense_Mutation p.R171S 0.31 deleterious(0.03) benign(0.152) TCGA-85-7697-01 X 12939101 12939101 C G TLR8 Missense_Mutation p.L648V 0.23 tolerated(0.41) benign(0.024) TCGA-85-7697-01 X 140985175 140985175 C T MAGEC3 Missense_Mutation p.P544L 0.27 deleterious(0.01) probably_damaging(0.983) TCGA-85-7697-01 X 140994690 140994690 G T MAGEC1 Missense_Mutation p.E500D 0.39 deleterious_low_confidence(0) benign(0.217) TCGA-85-7697-01 X 149013355 149013355 C A MAGEA8 Missense_Mutation p.H103Q 0.27 tolerated(0.35) benign(0.006) TCGA-85-7697-01 X 1508282 1508282 T C SLC25A6 Silent p.T150T 0.14 TCGA-85-7697-01 X 155004252 155004252 C A SPRY3 Missense_Mutation p.P240H 0.09 deleterious(0) probably_damaging(0.999) TCGA-85-7697-01 X 15841330 15841330 A G ZRSR2 Missense_Mutation p.R472G 0.22 deleterious_low_confidence(0) unknown(0) TCGA-85-7697-01 X 26212327 26212327 T A MAGEB6 Missense_Mutation p.S122T 0.36 tolerated(0.12) possibly_damaging(0.483) TCGA-85-7697-01 X 32841417 32841417 A T DMD Missense_Mutation p.W118R 0.14 probably_damaging(0.979) TCGA-85-7697-01 X 35988994 35988994 C T CXorf22 Missense_Mutation p.L642F 0.50 deleterious(0) possibly_damaging(0.471) TCGA-85-7697-01 X 49854870 49854870 A C CLCN5 Silent p.T614T 0.11 TCGA-85-7697-01 X 50659437 50659437 C G BMP15 Missense_Mutation p.H337D 0.18 deleterious(0.01) probably_damaging(1) TCGA-85-7697-01 X 70146766 70146766 G A SLC7A3 Missense_Mutation p.P471L 0.28 tolerated(0.53) benign(0.002) TCGA-85-7697-01 X 91090712 91090712 G T PCDH11X Missense_Mutation p.G70V 0.41 tolerated(0.08) probably_damaging(0.996) TCGA-85-7697-01 Y 5605548 5605548 G A PCDH11Y Silent p.Q1196Q 0.31 TCGA-85-7698-01 10 126694381 126694381 C G CTBP2 Intron 0.31 TCGA-85-7698-01 10 32562187 32562187 C G EPC1 Missense_Mutation p.Q589H 0.27 tolerated(0.13) possibly_damaging(0.855) TCGA-85-7698-01 10 89685281 89685281 C G PTEN Nonsense_Mutation p.S59* 0.14 TCGA-85-7698-01 11 113604518 113604518 T A ZW10 Silent p.G746G 0.12 TCGA-85-7698-01 11 113650682 113650682 G A CLDN25 Silent p.V55V 0.28 TCGA-85-7698-01 11 120352096 120352096 A G ARHGEF12 Silent p.Q1455Q 0.27 TCGA-85-7698-01 11 125616556 125616556 C T PATE1 Missense_Mutation p.A18V 0.31 tolerated(0.23) benign(0.011) TCGA-85-7698-01 11 35684686 35684686 C T TRIM44 Silent p.F9F 0.24 TCGA-85-7698-01 11 4967781 4967781 G C OR51A4 Missense_Mutation p.Q184E 0.10 deleterious(0.02) possibly_damaging(0.794) TCGA-85-7698-01 11 55321922 55321922 C G OR4C15 Missense_Mutation p.A47G 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.866) TCGA-85-7698-01 11 55652939 55652939 C T TRIM51 Missense_Mutation p.A12V 0.20 deleterious(0.03) benign(0.099) TCGA-85-7698-01 11 55703049 55703049 G A OR5I1 Silent p.I276I 0.11 TCGA-85-7698-01 11 56043514 56043514 C T OR5T1 Missense_Mutation p.R134C 0.19 deleterious(0.02) benign(0.181) TCGA-85-7698-01 11 56510828 56510828 C T OR9G4 Missense_Mutation p.A154T 0.08 tolerated(0.09) benign(0.002) TCGA-85-7698-01 11 62414650 62414650 G C INTS5 Missense_Mutation p.R968G 0.18 deleterious(0.02) benign(0.249) TCGA-85-7698-01 11 6942716 6942716 T C OR2D3 Missense_Mutation p.F162L 0.26 tolerated(0.52) benign(0) TCGA-85-7698-01 11 70118531 70118531 G A PPFIA1 Missense_Mutation p.A85T 0.06 tolerated(0.14) possibly_damaging(0.493) TCGA-85-7698-01 11 73714769 73714770 AC - UCP3 Intron 0.23 TCGA-85-7698-01 12 101017863 101017863 G C GAS2L3 Missense_Mutation p.C427S 0.31 tolerated(0.33) benign(0.004) TCGA-85-7698-01 12 109198953 109198953 T C SSH1 Missense_Mutation p.N278S 0.26 tolerated(0.14) benign(0.023) TCGA-85-7698-01 12 122620095 122620095 G T MLXIP Silent p.T638T 0.18 TCGA-85-7698-01 12 1993991 1993991 G A CACNA2D4 Silent p.D405D 0.23 TCGA-85-7698-01 12 23818415 23818415 G A SOX5 Silent p.F298F 0.27 TCGA-85-7698-01 12 29608206 29608206 C G OVCH1 Missense_Mutation p.D805H 0.22 deleterious(0) probably_damaging(0.984) TCGA-85-7698-01 12 44913970 44913970 C G NELL2 Missense_Mutation p.E790Q 0.15 tolerated(0.4) possibly_damaging(0.604) TCGA-85-7698-01 12 53453918 53453918 T G TENC1 Missense_Mutation p.I841M 0.08 deleterious(0.04) benign(0.436) TCGA-85-7698-01 12 56817680 56817680 T C TIMELESS Splice_Site p.X623_splice 0.29 TCGA-85-7698-01 12 85492728 85492728 A G LRRIQ1 Silent p.S1055S 0.42 TCGA-85-7698-01 13 45971406 45971406 G A SLC25A30 Missense_Mutation p.P274L 0.37 deleterious(0.03) probably_damaging(1) TCGA-85-7698-01 13 46067529 46067529 C T COG3 Missense_Mutation p.P412L 0.25 deleterious(0) probably_damaging(1) TCGA-85-7698-01 13 72440799 72440799 T A DACH1 Missense_Mutation p.T37S 0.24 unknown(0) TCGA-85-7698-01 14 103390110 103390110 T A AMN Missense_Mutation p.W36R 0.32 deleterious(0) probably_damaging(0.999) TCGA-85-7698-01 14 44975262 44975262 G T FSCB Missense_Mutation p.A310E 0.20 tolerated(0.93) benign(0.084) TCGA-85-7698-01 14 68028951 68028951 C - PLEKHH1 Frame_Shift_Del p.Q202Rfs*10 0.34 TCGA-85-7698-01 14 91975899 91975899 G T SMEK1 Nonsense_Mutation p.Y31* 0.40 TCGA-85-7698-01 14 94155012 94155012 G T UNC79 Missense_Mutation p.S2166I 0.09 deleterious(0) benign(0.311) TCGA-85-7698-01 15 20643907 20643907 T C HERC2P3 RNA 0.22 TCGA-85-7698-01 15 20644181 20644181 C A HERC2P3 Intron 0.31 TCGA-85-7698-01 15 38234553 38234553 G C TMCO5A Intron 0.05 TCGA-85-7698-01 15 58902667 58902667 G A ADAM10 Silent p.H618H 0.27 TCGA-85-7698-01 15 92647667 92647667 G C SLCO3A1 Missense_Mutation p.A302P 0.09 tolerated(0.35) benign(0.017) TCGA-85-7698-01 16 24817981 24817981 A G TNRC6A Silent p.P1472P 0.10 TCGA-85-7698-01 16 28855842 28855842 C G TUFM Missense_Mutation p.V239L 0.08 deleterious(0) benign(0.108) TCGA-85-7698-01 16 30389181 30389181 G T MYLPF Missense_Mutation p.C157F 0.19 deleterious(0.03) possibly_damaging(0.808) TCGA-85-7698-01 17 10408592 10408592 C A MYH1 Missense_Mutation p.G775W 0.33 deleterious(0) probably_damaging(1) TCGA-85-7698-01 17 26518179 26518179 C T NLK Missense_Mutation p.P457S 0.14 deleterious(0) possibly_damaging(0.902) TCGA-85-7698-01 17 35836981 35836981 G A TADA2A Missense_Mutation p.G409E 0.32 deleterious(0) probably_damaging(0.999) TCGA-85-7698-01 17 37224150 37224150 C A PLXDC1 Silent p.A482A 0.29 TCGA-85-7698-01 17 39471637 39471637 C T KRTAP17-1 Missense_Mutation p.G89E 0.19 unknown(0) TCGA-85-7698-01 17 55189850 55189850 A T AKAP1 Splice_Site p.X659_splice 0.22 TCGA-85-7698-01 17 56565317 56565317 G A HSF5 Missense_Mutation p.P107S 0.25 tolerated(0.49) benign(0.129) TCGA-85-7698-01 17 56676458 56676458 T G TEX14 Missense_Mutation p.N756H 0.15 deleterious(0.01) possibly_damaging(0.707) TCGA-85-7698-01 17 57262819 57262819 G C PRR11 Missense_Mutation p.D100H 0.16 deleterious(0) probably_damaging(0.973) TCGA-85-7698-01 17 61901198 61901198 C A FTSJ3 Missense_Mutation p.L423F 0.30 deleterious(0) probably_damaging(0.999) TCGA-85-7698-01 17 74071276 74071276 C A GALR2 Silent p.L104L 0.14 TCGA-85-7698-01 17 74729443 74729443 A G METTL23 Missense_Mutation p.T131A 0.33 tolerated(0.06) possibly_damaging(0.467) TCGA-85-7698-01 17 7577105 7577105 G T TP53 Missense_Mutation p.P278H 0.63 deleterious(0) probably_damaging(1) TCGA-85-7698-01 17 9808262 9808262 C - RCVRN Frame_Shift_Del p.G79Afs*14 0.27 TCGA-85-7698-01 18 47431182 47431182 G A MYO5B Missense_Mutation p.R811W 0.09 deleterious(0) probably_damaging(0.998) TCGA-85-7698-01 18 63511118 63511118 G A CDH7 Missense_Mutation p.R351H 0.17 tolerated(0.06) benign(0.058) TCGA-85-7698-01 19 1012111 1012111 G T TMEM259 Silent p.I265I 0.45 TCGA-85-7698-01 19 10597368 10597368 G A KEAP1 Missense_Mutation p.P612L 0.19 deleterious(0) probably_damaging(0.999) TCGA-85-7698-01 19 17394094 17394094 C A ANKLE1 Missense_Mutation p.P174Q 0.11 tolerated(0.38) benign(0.005) TCGA-85-7698-01 19 20807837 20807837 C T ZNF626 Silent p.K282K 0.09 TCGA-85-7698-01 19 32927386 32927386 A G DPY19L3 Silent p.E121E 0.24 TCGA-85-7698-01 19 36019116 36019116 G T SBSN Missense_Mutation p.A23E 0.36 deleterious(0) benign(0.403) TCGA-85-7698-01 19 36207128 36207128 A G ZBTB32 Missense_Mutation p.Y373C 0.32 deleterious(0.01) possibly_damaging(0.759) TCGA-85-7698-01 19 36275114 36275114 G A ARHGAP33 Missense_Mutation p.A488T 0.29 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-85-7698-01 19 43576042 43576042 G T PSG2 Nonsense_Mutation p.Y258* 0.28 TCGA-85-7698-01 19 55350952 55350952 T A KIR2DS4 Nonsense_Mutation p.L147* 0.31 TCGA-85-7698-01 19 55798412 55798412 G C BRSK1 Missense_Mutation p.Q58H 0.11 deleterious(0.02) possibly_damaging(0.522) TCGA-85-7698-01 1 103462640 103462640 G T COL11A1 Missense_Mutation p.A746D 0.15 unknown(0) TCGA-85-7698-01 1 113241079 113241079 C T MOV10 Silent p.V829V 0.47 TCGA-85-7698-01 1 149885215 149885215 C G SV2A Missense_Mutation p.A60P 0.33 tolerated_low_confidence(0.28) possibly_damaging(0.52) TCGA-85-7698-01 1 150238588 150238588 C T APH1A Missense_Mutation p.R247Q 0.21 tolerated(0.43) benign(0.001) TCGA-85-7698-01 1 152777564 152777564 C A LCE1C 3'UTR 0.39 TCGA-85-7698-01 1 155144966 155144966 C A RP11-201K10.3 Intron 0.30 TCGA-85-7698-01 1 157545266 157545266 C A FCRL4 3'UTR 0.31 TCGA-85-7698-01 1 157765922 157765923 - T FCRL1 Frame_Shift_Ins p.N419Kfs*8 0.23 TCGA-85-7698-01 1 157771958 157771958 C T FCRL1 Missense_Mutation p.M211I 0.16 deleterious(0.05) benign(0) TCGA-85-7698-01 1 186919850 186919850 C G PLA2G4A Missense_Mutation p.H442Q 0.11 tolerated(0.94) benign(0.001) TCGA-85-7698-01 1 215342553 215342553 A T KCNK2 Missense_Mutation p.I163F 0.49 deleterious(0) possibly_damaging(0.88) TCGA-85-7698-01 1 215848227 215848227 G - USH2A Frame_Shift_Del p.T4343Pfs*30 0.09 TCGA-85-7698-01 1 217822241 217822242 - A SPATA17 Frame_Shift_Ins p.E32Gfs*3 0.20 TCGA-85-7698-01 1 237893582 237893582 C T RYR2 Missense_Mutation p.L3621F 0.06 benign(0.103) TCGA-85-7698-01 1 24409129 24409129 G A MYOM3 Silent p.G682G 0.27 TCGA-85-7698-01 1 245851456 245851456 C G KIF26B Missense_Mutation p.S1724W 0.21 deleterious(0) unknown(0) TCGA-85-7698-01 1 248512806 248512806 C A OR14C36 Missense_Mutation p.L244M 0.20 tolerated(0.09) probably_damaging(0.951) TCGA-85-7698-01 1 249119014 249119014 T C SH3BP5L Missense_Mutation p.S41G 0.51 tolerated_low_confidence(0.42) benign(0) TCGA-85-7698-01 1 66458655 66458655 C G PDE4B Intron 0.41 TCGA-85-7698-01 1 94054666 94054666 T A BCAR3 Missense_Mutation p.Y266F 0.50 tolerated(0.29) probably_damaging(0.985) TCGA-85-7698-01 20 36767868 36767868 T C TGM2 Missense_Mutation p.S430G 0.08 tolerated(0.08) benign(0.018) TCGA-85-7698-01 20 40790158 40790158 G A PTPRT Missense_Mutation p.S839F 0.23 deleterious(0) benign(0.1) TCGA-85-7698-01 20 62606836 62606836 G A SAMD10 3'UTR 0.08 TCGA-85-7698-01 21 37618456 37618456 C T DOPEY2 Missense_Mutation p.A1393V 0.13 deleterious(0.03) benign(0.337) TCGA-85-7698-01 21 42064817 42064817 A G DSCAM Missense_Mutation p.F143L 0.15 tolerated(0.52) probably_damaging(0.999) TCGA-85-7698-01 22 26306961 26306961 A C MYO18B Missense_Mutation p.M1770L 0.30 tolerated(0.18) benign(0.012) TCGA-85-7698-01 22 29196050 29196050 G C XBP1 Intron 0.26 TCGA-85-7698-01 22 39357658 39357658 G C APOBEC3A Silent p.G147G 0.09 TCGA-85-7698-01 22 41318336 41318336 G T XPNPEP3 Splice_Site p.X352_splice 0.41 TCGA-85-7698-01 22 41621027 41621027 C T L3MBTL2 Silent p.A436A 0.06 TCGA-85-7698-01 2 141986778 141986778 G T LRP1B Missense_Mutation p.T275K 0.16 benign(0.403) TCGA-85-7698-01 2 145147386 145147386 G T ZEB2 Missense_Mutation p.R1093S 0.22 tolerated(0.08) probably_damaging(0.993) TCGA-85-7698-01 2 152315392 152315392 A G RIF1 Missense_Mutation p.M975V 0.23 tolerated(0.61) benign(0.002) TCGA-85-7698-01 2 15763645 15763645 C G DDX1 Missense_Mutation p.I511M 0.08 deleterious(0) possibly_damaging(0.894) TCGA-85-7698-01 2 158162315 158162315 C T GALNT5 Silent p.L832L 0.36 TCGA-85-7698-01 2 175450302 175450302 C T WIPF1 5'UTR 0.59 TCGA-85-7698-01 2 179453319 179453319 C T TTN Missense_Mutation p.G21045R 0.04 TCGA-85-7698-01 2 179453483 179453483 T G TTN Missense_Mutation p.D20990A 0.08 TCGA-85-7698-01 2 179585328 179585328 G C TTN Missense_Mutation p.L7721V 0.73 TCGA-85-7698-01 2 179611578 179611578 T A TTN Intron 0.64 TCGA-85-7698-01 2 202591974 202591974 C T ALS2 Silent p.E980E 0.05 TCGA-85-7698-01 2 211504769 211504769 G T CPS1 Missense_Mutation p.G988V 0.42 deleterious(0) probably_damaging(1) TCGA-85-7698-01 2 240981443 240981443 C A PRR21 Silent p.R319R 0.32 TCGA-85-7698-01 2 26725284 26725284 C A OTOF Silent p.A198A 0.29 TCGA-85-7698-01 2 48897113 48897113 G C STON1-GTF2A1L Missense_Mutation p.V1115L 0.35 tolerated(0.07) possibly_damaging(0.806) TCGA-85-7698-01 2 7160759 7160759 G A RNF144A Missense_Mutation p.G153S 0.17 tolerated(0.24) benign(0.142) TCGA-85-7698-01 2 7160760 7160760 G T RNF144A Missense_Mutation p.G153V 0.17 tolerated(0.07) benign(0.261) TCGA-85-7698-01 2 79254950 79254950 A T REG3G Silent p.G117G 0.33 TCGA-85-7698-01 2 88874320 88874320 T G EIF2AK3 Missense_Mutation p.E894A 0.12 deleterious(0) probably_damaging(0.981) TCGA-85-7698-01 2 8936988 8936988 C T KIDINS220 Silent p.T337T 0.08 TCGA-85-7698-01 2 90060471 90060471 C T IGKV6D-21 Silent p.L10L 0.57 TCGA-85-7698-01 2 98736005 98736005 G A VWA3B Silent p.Q107Q 0.11 TCGA-85-7698-01 3 100489750 100489750 G A ABI3BP Silent p.S815S 0.23 TCGA-85-7698-01 3 130293336 130293336 G A COL6A6 Missense_Mutation p.V1172I 0.12 tolerated(0.08) benign(0.062) TCGA-85-7698-01 3 150340836 150340836 A G SELT Missense_Mutation p.I85M 0.16 tolerated(0.12) benign(0.088) TCGA-85-7698-01 3 89499513 89499513 G T EPHA3 Missense_Mutation p.A895S 0.19 tolerated(1) benign(0.001) TCGA-85-7698-01 4 109578795 109578795 G A OSTC Missense_Mutation p.M141I 0.34 tolerated(0.65) benign(0.003) TCGA-85-7698-01 4 128841760 128841760 A T MFSD8 3'UTR 0.35 TCGA-85-7698-01 4 176594835 176594835 G A GPM6A Missense_Mutation p.A128V 0.32 deleterious(0.02) possibly_damaging(0.473) TCGA-85-7698-01 4 3319283 3319283 G T RGS12 Silent p.G462G 0.44 TCGA-85-7698-01 4 4411402 4411402 G A NSG1 Missense_Mutation p.V117I 0.08 tolerated(0.25) benign(0.016) TCGA-85-7698-01 4 52862253 52862253 C G LRRC66 Missense_Mutation p.R312P 0.15 tolerated(0.38) benign(0) TCGA-85-7698-01 4 85731206 85731206 C T WDFY3 Missense_Mutation p.D727N 0.05 tolerated(0.34) benign(0.002) TCGA-85-7698-01 5 13922244 13922244 G T DNAH5 Nonsense_Mutation p.S211* 0.21 TCGA-85-7698-01 5 149929315 149929315 G T NDST1 Missense_Mutation p.V798L 0.52 tolerated(0.5) benign(0.01) TCGA-85-7698-01 5 160029624 160029653 CGCGAGTAACACCAGTGGCCATGCACGAGC - ATP10B In_Frame_Del p.V1100_L1109del 0.59 TCGA-85-7698-01 5 19591171 19591171 T G CDH18 Missense_Mutation p.K332Q 0.17 tolerated(0.15) possibly_damaging(0.677) TCGA-85-7698-01 6 116288883 116288883 C T FRK Splice_Site p.X211_splice 0.17 TCGA-85-7698-01 6 152793519 152793519 T C SYNE1 Silent p.K460K 0.52 TCGA-85-7698-01 6 161132143 161132143 G C PLG Missense_Mutation p.K109N 0.35 tolerated(0.16) benign(0.018) TCGA-85-7698-01 6 17637403 17637403 G A NUP153 Silent p.S815S 0.19 TCGA-85-7698-01 6 26123856 26123856 T C HIST1H2BC Missense_Mutation p.R93G 0.25 deleterious_low_confidence(0) possibly_damaging(0.873) TCGA-85-7698-01 6 27806045 27806045 G C HIST1H2AK Missense_Mutation p.Q25E 0.21 deleterious_low_confidence(0.01) benign(0.159) TCGA-85-7698-01 6 3085585 3085585 A G RIPK1 Missense_Mutation p.I261V 0.24 tolerated(0.1) benign(0.26) TCGA-85-7698-01 6 38976594 38976594 C G DNAH8 Missense_Mutation p.Q4190E 0.14 probably_damaging(0.91) TCGA-85-7698-01 6 47253828 47253828 G T TNFRSF21 Silent p.I200I 0.22 TCGA-85-7698-01 6 51720779 51720779 G C PKHD1 Missense_Mutation p.S2608C 0.20 deleterious(0) probably_damaging(0.999) TCGA-85-7698-01 6 99850500 99850500 A G PNISR Silent p.L415L 0.26 TCGA-85-7698-01 7 107312669 107312669 G A SLC26A4 Missense_Mutation p.G131R 0.29 deleterious(0) probably_damaging(1) TCGA-85-7698-01 7 148768476 148768476 C T ZNF786 Missense_Mutation p.R463H 0.19 tolerated(0.44) benign(0.04) TCGA-85-7698-01 7 4153818 4153818 G A SDK1 Nonsense_Mutation p.W1245* 0.29 TCGA-85-7698-01 7 50534947 50534947 C T DDC Missense_Mutation p.E403K 0.23 tolerated(0.37) benign(0.01) TCGA-85-7698-01 7 51095457 51095457 G A COBL Silent p.A1112A 0.36 TCGA-85-7698-01 7 84651721 84651721 A G SEMA3D Missense_Mutation p.M467T 0.19 deleterious(0) probably_damaging(0.988) TCGA-85-7698-01 7 88966072 88966072 A C ZNF804B Missense_Mutation p.H1259P 0.07 deleterious(0) possibly_damaging(0.892) TCGA-85-7698-01 8 10466505 10466505 A T RP1L1 Silent p.T1701T 0.50 TCGA-85-7698-01 8 113353709 113353709 G C CSMD3 Missense_Mutation p.Q2217E 0.46 tolerated(0.09) benign(0.042) TCGA-85-7698-01 8 121463465 121463465 G A MTBP Missense_Mutation p.E110K 0.55 deleterious(0.04) possibly_damaging(0.908) TCGA-85-7698-01 8 133053842 133053842 G A OC90 Nonsense_Mutation p.R92* 0.52 TCGA-85-7698-01 8 139263166 139263166 C A FAM135B Missense_Mutation p.V154F 0.19 deleterious(0) probably_damaging(0.986) TCGA-85-7698-01 8 18079638 18079638 C T NAT1 Missense_Mutation p.L90F 0.49 tolerated(0.18) benign(0.016) TCGA-85-7698-01 8 68049763 68049763 G A CSPP1 Missense_Mutation p.E629K 0.33 deleterious(0) probably_damaging(0.995) TCGA-85-7698-01 8 69621303 69621303 C T C8orf34 Missense_Mutation p.P439L 0.17 tolerated(0.13) benign(0.013) TCGA-85-7698-01 8 89053689 89053689 T C MMP16 Nonstop_Mutation p.*608Wext*17 0.28 TCGA-85-7698-01 9 116176059 116176059 G T C9orf43 Missense_Mutation p.V58L 0.26 deleterious(0.03) benign(0.046) TCGA-85-7698-01 9 117909 117909 C G FOXD4 Missense_Mutation p.E71Q 0.65 deleterious(0.04) benign(0.131) TCGA-85-7698-01 9 139362871 139362871 A G SEC16A Silent p.Y1266Y 0.33 TCGA-85-7698-01 9 32631974 32631974 C G TAF1L Missense_Mutation p.E1202Q 0.13 deleterious(0) possibly_damaging(0.682) TCGA-85-7698-01 X 138884425 138884425 T A ATP11C Missense_Mutation p.E213V 0.59 deleterious(0.01) probably_damaging(1) TCGA-85-7698-01 X 2828765 2828765 T C ARSD Missense_Mutation p.H357R 0.58 deleterious(0) probably_damaging(0.952) TCGA-85-7698-01 X 3019216 3019216 T C ARSF Silent p.A352A 0.61 TCGA-85-7698-01 X 49845280 49845280 C T CLCN5 Silent p.F211F 0.23 TCGA-85-7698-01 X 67937468 67937468 A G STARD8 Missense_Mutation p.K238E 0.72 tolerated(0.35) benign(0.068) TCGA-85-7699-01 10 108388987 108388987 T G SORCS1 Missense_Mutation p.S879R 0.45 tolerated(0.35) benign(0.087) TCGA-85-7699-01 10 118187460 118187460 G A PNLIPRP3 5'UTR 0.44 TCGA-85-7699-01 10 118187505 118187505 G T PNLIPRP3 5'UTR 0.49 TCGA-85-7699-01 10 132944841 132944841 G T TCERG1L Missense_Mutation p.L373M 0.50 deleterious(0) probably_damaging(0.999) TCGA-85-7699-01 10 16871020 16871020 A G CUBN Silent p.Y3516Y 0.44 TCGA-85-7699-01 10 3155584 3155584 C T PFKP Silent p.V415V 0.49 TCGA-85-7699-01 10 50531447 50531447 A T C10orf71 Missense_Mutation p.K286M 0.34 deleterious(0) probably_damaging(0.927) TCGA-85-7699-01 10 71703882 71703882 G A COL13A1 Missense_Mutation p.G628D 0.58 deleterious(0) probably_damaging(1) TCGA-85-7699-01 10 89118087 89118087 A G NUTM2D Missense_Mutation p.E22G 0.37 tolerated_low_confidence(0.17) possibly_damaging(0.859) TCGA-85-7699-01 11 103908614 103908614 G C DDI1 Missense_Mutation p.G355A 0.43 deleterious(0) benign(0.183) TCGA-85-7699-01 11 10824789 10824789 T A EIF4G2 Missense_Mutation p.E289V 0.40 deleterious(0) probably_damaging(0.95) TCGA-85-7699-01 11 47290152 47290152 C G NR1H3 Missense_Mutation p.L417V 0.36 deleterious(0) probably_damaging(0.981) TCGA-85-7699-01 11 55405915 55405915 T A OR4P4 Missense_Mutation p.L28I 0.20 tolerated(0.1) benign(0.019) TCGA-85-7699-01 11 55658695 55658695 C T TRIM51 Nonsense_Mutation p.Q316* 0.38 TCGA-85-7699-01 11 55703042 55703042 A G OR5I1 Missense_Mutation p.F279L 0.34 deleterious(0.02) benign(0.009) TCGA-85-7699-01 11 58190194 58190194 C T OR5B2 Missense_Mutation p.A181T 0.16 deleterious_low_confidence(0.01) probably_damaging(0.928) TCGA-85-7699-01 11 59224861 59224861 C A OR4D6 Missense_Mutation p.A143D 0.37 tolerated(0.14) benign(0.243) TCGA-85-7699-01 11 62356636 62356636 C A TUT1 Missense_Mutation p.R85L 0.36 deleterious(0) probably_damaging(1) TCGA-85-7699-01 11 65309133 65309133 C T LTBP3 Missense_Mutation p.G888D 0.09 deleterious(0.02) probably_damaging(1) TCGA-85-7699-01 11 67200453 67200453 G A RPS6KB2 Missense_Mutation p.C216Y 0.18 deleterious(0) probably_damaging(0.992) TCGA-85-7699-01 12 11420276 11420276 G C PRB3 Silent p.P260P 0.17 TCGA-85-7699-01 12 120222832 120222832 T A CIT Missense_Mutation p.S445C 0.33 deleterious(0.04) possibly_damaging(0.447) TCGA-85-7699-01 12 120597804 120597804 C A GCN1L1 Silent p.A858A 0.22 TCGA-85-7699-01 12 123353033 123353033 G A VPS37B Silent p.D120D 0.35 TCGA-85-7699-01 12 132635871 132635871 G A NOC4L Missense_Mutation p.R344H 0.29 deleterious(0) probably_damaging(0.998) TCGA-85-7699-01 12 13716162 13716162 G A GRIN2B Missense_Mutation p.A1337V 0.22 deleterious(0) possibly_damaging(0.756) TCGA-85-7699-01 12 23818464 23818464 A G SOX5 Missense_Mutation p.V282A 0.53 tolerated(0.85) possibly_damaging(0.459) TCGA-85-7699-01 12 40631796 40631796 T A LRRK2 Missense_Mutation p.D154E 0.25 tolerated(0.74) benign(0.005) TCGA-85-7699-01 12 43860564 43860564 T C ADAMTS20 Missense_Mutation p.K420E 0.29 deleterious(0.01) benign(0.366) TCGA-85-7699-01 12 49433143 49433143 T C KMT2D Splice_Site p.X2744_splice 0.28 TCGA-85-7699-01 12 52827848 52827848 G T KRT75 Silent p.R81R 0.30 TCGA-85-7699-01 12 58013929 58013929 G A SLC26A10 5'UTR 0.19 TCGA-85-7699-01 12 85515476 85515476 G C LRRIQ1 Missense_Mutation p.D1127H 0.04 tolerated(0.55) benign(0) TCGA-85-7699-01 12 8672930 8672930 C A CLEC4D Missense_Mutation p.R165S 0.21 tolerated(0.05) benign(0.28) TCGA-85-7699-01 13 101890194 101890194 G A NALCN Missense_Mutation p.S449F 0.29 deleterious(0) possibly_damaging(0.549) TCGA-85-7699-01 13 103498673 103498673 C T ERCC5 Silent p.P19P 0.22 TCGA-85-7699-01 13 107822843 107822843 C A FAM155A 3'UTR 0.25 TCGA-85-7699-01 13 111111236 111111236 A G COL4A2 Silent p.R517R 0.28 TCGA-85-7699-01 13 113803375 113803375 C A F10 Missense_Mutation p.N337K 0.31 tolerated(0.14) probably_damaging(1) TCGA-85-7699-01 13 32913588 32913588 A G BRCA2 Missense_Mutation p.D1699G 0.18 tolerated(0.09) benign(0.043) TCGA-85-7699-01 13 49796357 49796357 G C MLNR Missense_Mutation p.K361N 0.44 deleterious(0.03) benign(0.091) TCGA-85-7699-01 13 78335137 78335137 A G SLAIN1 Missense_Mutation p.N366S 0.44 tolerated(0.93) benign(0.003) TCGA-85-7699-01 14 101500139 101500139 C T MIR495 RNA 0.29 TCGA-85-7699-01 14 105169733 105169733 C T INF2 Silent p.A203A 0.16 TCGA-85-7699-01 14 106733365 106733365 A G IGHV1-24 Missense_Mutation p.S44P 0.03 deleterious(0) possibly_damaging(0.705) TCGA-85-7699-01 14 20586149 20586149 T A OR4K17 Missense_Mutation p.V195E 0.03 deleterious(0) probably_damaging(0.956) TCGA-85-7699-01 14 20924095 20924095 G A APEX1 Silent p.K27K 0.26 TCGA-85-7699-01 14 20924096 20924096 A T APEX1 Missense_Mutation p.T28S 0.26 tolerated(0.56) benign(0) TCGA-85-7699-01 14 24527075 24527095 AGCTGCTCCCACAGGTGGGAG - LRRC16B Splice_Site p.X402_splice 0.27 TCGA-85-7699-01 14 26949331 26949331 C A NOVA1 Missense_Mutation p.C100F 0.31 deleterious(0) unknown(0) TCGA-85-7699-01 14 30066889 30066889 C A PRKD1 Missense_Mutation p.A748S 0.24 deleterious(0) probably_damaging(0.967) TCGA-85-7699-01 14 36841085 36841085 C T DPPA3P2 RNA 0.23 TCGA-85-7699-01 14 42356283 42356283 T A LRFN5 Missense_Mutation p.L152Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-85-7699-01 14 42360948 42360948 T G LRFN5 Silent p.S627S 0.21 TCGA-85-7699-01 14 70496988 70496988 C A SMOC1 3'UTR 0.20 TCGA-85-7699-01 14 96707048 96707048 C T BDKRB2 Missense_Mutation p.T128M 0.30 tolerated(0.09) benign(0.383) TCGA-85-7699-01 15 101016370 101016370 G A CERS3 Missense_Mutation p.S177F 0.37 deleterious(0.02) probably_damaging(1) TCGA-85-7699-01 15 25339246 25339246 T A SNORD116-24 RNA 0.31 TCGA-85-7699-01 15 25444629 25444629 A T SNORD115-16 RNA 0.27 TCGA-85-7699-01 15 26866560 26866560 G A GABRB3 Missense_Mutation p.T121I 0.29 deleterious(0.02) probably_damaging(1) TCGA-85-7699-01 15 65890731 65890731 G A VWA9 Nonsense_Mutation p.Q169* 0.28 TCGA-85-7699-01 15 66840940 66840940 G T LCTL Missense_Mutation p.P531H 0.34 deleterious(0) probably_damaging(0.94) TCGA-85-7699-01 15 74964114 74964114 C A EDC3 Missense_Mutation p.A56S 0.16 tolerated(0.09) probably_damaging(0.939) TCGA-85-7699-01 15 79058807 79058807 G C ADAMTS7 Missense_Mutation p.P1149R 0.24 deleterious(0.05) possibly_damaging(0.777) TCGA-85-7699-01 16 343687 343687 C G AXIN1 Missense_Mutation p.E663Q 0.06 tolerated(0.07) possibly_damaging(0.623) TCGA-85-7699-01 16 53243468 53243468 T C CHD9 Silent p.S509S 0.44 TCGA-85-7699-01 17 11778385 11778385 C T DNAH9 Silent p.T3454T 0.29 TCGA-85-7699-01 17 12663987 12663987 G C MYOCD Missense_Mutation p.Q784H 0.39 deleterious(0) probably_damaging(0.999) TCGA-85-7699-01 17 26684905 26684905 G T TMEM199 Splice_Site p.X71_splice 0.35 TCGA-85-7699-01 17 28964086 28964086 A G LRRC37BP1 RNA 0.21 TCGA-85-7699-01 17 2911382 2911382 C A RAP1GAP2 Silent p.G479G 0.25 TCGA-85-7699-01 17 32647944 32647944 G C CCL8 3'UTR 0.33 TCGA-85-7699-01 17 32685265 32685265 C T CCL13 3'UTR 0.33 TCGA-85-7699-01 17 3979976 3979976 T A ZZEF1 Missense_Mutation p.E1063D 0.40 tolerated(0.22) benign(0.011) TCGA-85-7699-01 17 57078968 57078968 G A TRIM37 Missense_Mutation p.P935S 0.28 tolerated_low_confidence(0.46) benign(0.002) TCGA-85-7699-01 17 7578370 7578370 C T TP53 Splice_Site p.X187_splice 0.27 TCGA-85-7699-01 17 7578457 7578457 C A TP53 Missense_Mutation p.R158L 0.26 deleterious(0) probably_damaging(0.986) TCGA-85-7699-01 17 77807920 77807920 C T CBX4 Silent p.A507A 0.06 TCGA-85-7699-01 17 78262027 78262027 C T RNF213 Silent p.T225T 0.27 TCGA-85-7699-01 17 8793289 8793289 C T PIK3R5 Splice_Site p.X271_splice 0.23 TCGA-85-7699-01 18 34901826 34901826 C G CELF4 Missense_Mutation p.V130L 0.26 deleterious(0.01) benign(0.004) TCGA-85-7699-01 18 40850282 40850282 A C SYT4 3'UTR 0.04 TCGA-85-7699-01 18 50683813 50683813 G A DCC Missense_Mutation p.R450H 0.28 deleterious(0.01) probably_damaging(0.981) TCGA-85-7699-01 18 61264575 61264575 T G SERPINB13 Missense_Mutation p.F385C 0.03 tolerated(0.13) probably_damaging(1) TCGA-85-7699-01 19 21203540 21203540 G T ZNF430 5'UTR 0.39 TCGA-85-7699-01 19 3025064 3025064 C T TLE2 Missense_Mutation p.R83H 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-85-7699-01 19 37643866 37643866 T C ZNF585A Missense_Mutation p.Q257R 0.23 tolerated(0.37) probably_damaging(0.985) TCGA-85-7699-01 19 38160200 38160200 G T ZNF781 Missense_Mutation p.L284I 0.47 tolerated(0.49) benign(0.364) TCGA-85-7699-01 19 39359922 39359922 G T RINL Silent p.R535R 0.24 TCGA-85-7699-01 19 43680218 43680218 A C PSG5 Silent p.P171P 0.02 TCGA-85-7699-01 19 44680929 44680929 G T ZNF226 Missense_Mutation p.C505F 0.25 deleterious(0) probably_damaging(1) TCGA-85-7699-01 19 45574119 45574119 G T CLASRP 3'UTR 0.51 TCGA-85-7699-01 19 46307685 46307685 T A RSPH6A Missense_Mutation p.Q493L 0.46 tolerated(0.08) benign(0.033) TCGA-85-7699-01 19 54724556 54724556 C T LILRB3 Missense_Mutation p.R367H 0.08 tolerated(0.3) benign(0.005) TCGA-85-7699-01 19 54744308 54744308 C T LILRA6 Missense_Mutation p.R367H 0.05 tolerated(0.36) benign(0.104) TCGA-85-7699-01 19 55175214 55175214 C G LILRB4 Missense_Mutation p.P25A 0.45 tolerated(0.78) benign(0.047) TCGA-85-7699-01 19 55435176 55435176 G C NLRP7 Missense_Mutation p.P1016A 0.21 deleterious(0) benign(0.32) TCGA-85-7699-01 19 57802506 57802506 A C ZNF460 Silent p.P199P 0.45 TCGA-85-7699-01 19 58797482 58797482 A T ZNF8 Missense_Mutation p.E67V 0.08 tolerated(0.28) benign(0.012) TCGA-85-7699-01 19 9068414 9068414 G A MUC16 Silent p.S6344S 0.19 TCGA-85-7699-01 1 144879053 144879053 C G PDE4DIP Missense_Mutation p.R1466T 0.18 deleterious(0) possibly_damaging(0.772) TCGA-85-7699-01 1 156815573 156815573 C A INSRR Missense_Mutation p.R671L 0.34 tolerated(0.33) benign(0.123) TCGA-85-7699-01 1 156954135 156954135 C T ARHGEF11 Silent p.R73R 0.29 TCGA-85-7699-01 1 158450445 158450445 A G OR10R2 Missense_Mutation p.T260A 0.30 deleterious(0) probably_damaging(1) TCGA-85-7699-01 1 161044449 161044449 T A PVRL4 Missense_Mutation p.S318C 0.30 deleterious(0.01) probably_damaging(0.912) TCGA-85-7699-01 1 16273594 16273594 A G ZBTB17 Missense_Mutation p.M77T 0.07 deleterious_low_confidence(0) benign(0.413) TCGA-85-7699-01 1 162824631 162824631 C A C1orf110 Missense_Mutation p.G278V 0.28 deleterious(0) probably_damaging(0.988) TCGA-85-7699-01 1 167868708 167868708 G T ADCY10 Silent p.R199R 0.04 TCGA-85-7699-01 1 185175892 185175892 A T SWT1 Nonsense_Mutation p.K657* 0.34 TCGA-85-7699-01 1 186647479 186647479 C A PTGS2 Missense_Mutation p.S124I 0.29 deleterious(0) probably_damaging(0.974) TCGA-85-7699-01 1 192153771 192153771 C T RGS18 3'UTR 0.38 TCGA-85-7699-01 1 19483295 19483295 C T UBR4 Missense_Mutation p.C1962Y 0.55 probably_damaging(0.927) TCGA-85-7699-01 1 216246449 216246449 C T USH2A Silent p.Q1922Q 0.33 TCGA-85-7699-01 1 224437981 224437981 T A NVL Missense_Mutation p.D741V 0.34 deleterious(0) probably_damaging(0.991) TCGA-85-7699-01 1 229683269 229683269 C A ABCB10 Missense_Mutation p.A300S 0.28 tolerated(0.08) benign(0.34) TCGA-85-7699-01 1 237817576 237817576 G T RYR2 Silent p.L2609L 0.25 TCGA-85-7699-01 1 247007223 247007223 T A AHCTF1 Missense_Mutation p.K2142N 0.40 tolerated(0.06) benign(0.014) TCGA-85-7699-01 1 247024560 247024560 G A AHCTF1 Missense_Mutation p.P1267L 0.27 tolerated(0.67) benign(0) TCGA-85-7699-01 1 35227077 35227077 G C GJB4 Silent p.V74V 0.26 TCGA-85-7699-01 1 39838362 39838362 A T MACF1 Intron 0.28 TCGA-85-7699-01 1 43002201 43002201 G A CCDC30 Missense_Mutation p.E16K 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-85-7699-01 1 43818295 43818295 C A MPL Missense_Mutation p.A587D 0.30 tolerated(0.12) benign(0.075) TCGA-85-7699-01 1 65854984 65854984 A C DNAJC6 Silent p.L413L 0.34 TCGA-85-7699-01 1 67452268 67452268 T A MIER1 3'Flank 0.32 TCGA-85-7699-01 20 13550170 13550170 A G TASP1 Silent p.P184P 0.27 TCGA-85-7699-01 20 14307113 14307113 T A FLRT3 Missense_Mutation p.D347V 0.32 deleterious(0) probably_damaging(0.973) TCGA-85-7699-01 20 51871942 51871942 G T TSHZ2 Missense_Mutation p.G649C 0.31 tolerated(0.18) benign(0) TCGA-85-7699-01 21 22746184 22746184 G T NCAM2 Missense_Mutation p.S349I 0.32 deleterious(0) probably_damaging(0.968) TCGA-85-7699-01 21 22746334 22746334 G A NCAM2 Splice_Site p.X399_splice 0.24 TCGA-85-7699-01 21 38593651 38593651 G A DSCR3 3'Flank 0.38 TCGA-85-7699-01 22 17071899 17071899 G C CCT8L2 Silent p.L514L 0.32 TCGA-85-7699-01 22 23653912 23653912 G T BCR Missense_Mutation p.V1071L 0.27 deleterious(0.01) benign(0) TCGA-85-7699-01 22 25151799 25151799 G A PIWIL3 Missense_Mutation p.T215M 0.30 tolerated(0.09) benign(0.002) TCGA-85-7699-01 22 30722759 30722762 GTTC - TBC1D10A Frame_Shift_Del p.E37Sfs*49 0.39 TCGA-85-7699-01 22 41257993 41257993 C G DNAJB7 Silent p.V2V 0.07 TCGA-85-7699-01 22 41489017 41489017 G T EP300 Missense_Mutation p.E3D 0.25 unknown(0) TCGA-85-7699-01 22 44028062 44028062 T A EFCAB6 Missense_Mutation p.S719C 0.03 deleterious(0.04) possibly_damaging(0.619) TCGA-85-7699-01 2 103281810 103281810 G A SLC9A2 Splice_Site p.X335_splice 0.35 TCGA-85-7699-01 2 108488115 108488115 G T RGPD4 Nonsense_Mutation p.E1219* 0.11 TCGA-85-7699-01 2 120620151 120620151 A C PTPN4 Missense_Mutation p.K60Q 0.03 tolerated(0.75) benign(0.224) TCGA-85-7699-01 2 125175070 125175070 G C CNTNAP5 Missense_Mutation p.L144F 0.08 deleterious(0.03) possibly_damaging(0.832) TCGA-85-7699-01 2 128384640 128384640 C A MYO7B Silent p.R1410R 0.30 TCGA-85-7699-01 2 170151181 170151181 G A LRP2 Missense_Mutation p.A156V 0.41 probably_damaging(0.999) TCGA-85-7699-01 2 179437536 179437536 C T TTN Silent p.R24441R 0.36 TCGA-85-7699-01 2 179592323 179592323 A G TTN Missense_Mutation p.L6661S 0.39 TCGA-85-7699-01 2 189873785 189873785 G A COL3A1 Missense_Mutation p.G1221R 0.39 unknown(0) TCGA-85-7699-01 2 21234435 21234435 T C APOB Missense_Mutation p.K1769E 0.59 probably_damaging(0.985) TCGA-85-7699-01 2 220086793 220086793 C T ATG9A Silent p.L708L 0.05 TCGA-85-7699-01 2 227946866 227946866 C T COL4A4 Missense_Mutation p.G554E 0.36 probably_damaging(0.993) TCGA-85-7699-01 2 228767720 228767720 G A DAW1 Silent p.V181V 0.38 TCGA-85-7699-01 2 242045911 242045911 C G PASK 3'UTR 0.04 TCGA-85-7699-01 2 88387388 88387389 GC - SMYD1 Frame_Shift_Del p.R109Hfs*69 0.41 TCGA-85-7699-01 2 97911413 97911413 A G ANKRD36 Missense_Mutation p.T1697A 0.11 tolerated(0.19) benign(0.297) TCGA-85-7699-01 3 109028036 109028036 C A DPPA2 Missense_Mutation p.G108V 0.31 deleterious(0.01) benign(0.068) TCGA-85-7699-01 3 109049443 109049443 G T DPPA4 Missense_Mutation p.L203M 0.28 tolerated(0.06) probably_damaging(0.964) TCGA-85-7699-01 3 115805385 115805385 C T LSAMP Silent p.K58K 0.22 TCGA-85-7699-01 3 132244605 132244605 G A DNAJC13 Missense_Mutation p.R2071Q 0.22 tolerated(0.61) benign(0.018) TCGA-85-7699-01 3 157271026 157271026 T C C3orf55 5'UTR 0.33 TCGA-85-7699-01 3 164696996 164696996 T G SI 3'UTR 0.48 TCGA-85-7699-01 3 165547920 165547920 A G BCHE Missense_Mutation p.L301P 0.40 deleterious(0.01) probably_damaging(0.997) TCGA-85-7699-01 3 176750820 176750820 G A TBL1XR1 Missense_Mutation p.P452L 0.18 deleterious(0) probably_damaging(0.936) TCGA-85-7699-01 3 182597368 182597368 A G ATP11B Silent p.L779L 0.29 TCGA-85-7699-01 3 187416366 187416366 G A RTP2 Missense_Mutation p.R200C 0.07 deleterious(0.01) possibly_damaging(0.776) TCGA-85-7699-01 3 195935326 195935326 G A ZDHHC19 Silent p.L172L 0.16 TCGA-85-7699-01 3 38798329 38798329 A G SCN10A Missense_Mutation p.F376L 0.46 deleterious(0) probably_damaging(0.999) TCGA-85-7699-01 3 46062614 46062614 C T XCR1 Missense_Mutation p.A276T 0.36 deleterious(0) probably_damaging(0.999) TCGA-85-7699-01 3 49723029 49723029 C T MST1 Missense_Mutation p.A463T 0.39 tolerated(0.25) benign(0.003) TCGA-85-7699-01 3 52522622 52522622 G A NISCH Splice_Site p.X1038_splice 0.30 TCGA-85-7699-01 3 89445033 89445033 T C EPHA3 Silent p.N451N 0.38 TCGA-85-7699-01 3 89448710 89448710 C A EPHA3 Intron 0.47 TCGA-85-7699-01 3 97851608 97851608 T C OR5H1 Missense_Mutation p.W23R 0.31 deleterious(0) benign(0.344) TCGA-85-7699-01 4 114274668 114274668 G T ANK2 Missense_Mutation p.D1632Y 0.43 probably_damaging(0.993) TCGA-85-7699-01 4 123165093 123165093 A T KIAA1109 Silent p.P1609P 0.50 TCGA-85-7699-01 4 141484635 141484635 T A UCP1 Silent p.L121L 0.45 TCGA-85-7699-01 4 155720492 155720492 C G RBM46 Missense_Mutation p.S393C 0.37 deleterious(0.01) probably_damaging(0.98) TCGA-85-7699-01 4 183710438 183710438 C A TENM3 Missense_Mutation p.Q1833K 0.42 tolerated(0.18) benign(0.292) TCGA-85-7699-01 4 186380110 186380110 T C CCDC110 Missense_Mutation p.D544G 0.44 deleterious(0.03) possibly_damaging(0.767) TCGA-85-7699-01 4 44449647 44449647 G C KCTD8 Silent p.T298T 0.31 TCGA-85-7699-01 5 121487891 121487891 C G ZNF474 Nonsense_Mutation p.S69* 0.44 TCGA-85-7699-01 5 122337107 122337107 G C SNX24 Missense_Mutation p.D118H 0.11 deleterious(0.04) benign(0.417) TCGA-85-7699-01 5 139493919 139493919 A G PURA Silent p.P51P 0.43 TCGA-85-7699-01 5 140167512 140167512 G C PCDHA1 Missense_Mutation p.G546A 0.39 deleterious_low_confidence(0.04) benign(0.209) TCGA-85-7699-01 5 156668668 156668668 G T ITK Missense_Mutation p.R333L 0.33 deleterious(0) probably_damaging(0.988) TCGA-85-7699-01 5 178415944 178415944 C A GRM6 Missense_Mutation p.R449L 0.56 deleterious(0.02) benign(0.258) TCGA-85-7699-01 6 127911258 127911258 C A C6orf58 Missense_Mutation p.A234E 0.34 tolerated(0.09) benign(0.046) TCGA-85-7699-01 6 129513990 129513990 G T LAMA2 Nonsense_Mutation p.G592* 0.27 TCGA-85-7699-01 6 138576735 138576735 G A KIAA1244 Silent p.A311A 0.36 TCGA-85-7699-01 6 144095353 144095353 G A PHACTR2 Splice_Site p.X530_splice 0.30 TCGA-85-7699-01 6 152599377 152599377 T G SYNE1 Missense_Mutation p.L6140F 0.27 probably_damaging(0.999) TCGA-85-7699-01 6 152640092 152640092 C T SYNE1 Missense_Mutation p.R5432Q 0.08 benign(0.001) TCGA-85-7699-01 6 152774623 152774623 C A SYNE1 Intron 0.25 TCGA-85-7699-01 6 158342593 158342593 G A SNX9 Missense_Mutation p.R327H 0.13 deleterious(0) probably_damaging(0.999) TCGA-85-7699-01 6 24875951 24875951 C T FAM65B Silent p.A23A 0.16 TCGA-85-7699-01 6 25862131 25862131 C A SLC17A3 Missense_Mutation p.G144C 0.33 deleterious(0) probably_damaging(0.999) TCGA-85-7699-01 6 25921305 25921305 C A SLC17A2 Missense_Mutation p.G164V 0.36 deleterious(0) probably_damaging(0.919) TCGA-85-7699-01 6 28366058 28366058 C G ZSCAN12 Missense_Mutation p.R42T 0.41 tolerated(0.17) possibly_damaging(0.659) TCGA-85-7699-01 6 32812166 32812166 G T PSMB8 5'Flank 0.31 TCGA-85-7699-01 6 44217877 44217877 C G HSP90AB1 Missense_Mutation p.P212A 0.13 deleterious(0) possibly_damaging(0.737) TCGA-85-7699-01 6 44224560 44224560 T C SLC35B2 Missense_Mutation p.T23A 0.31 tolerated(0.89) benign(0) TCGA-85-7699-01 7 103206810 103206810 A G RELN Silent p.N1599N 0.31 TCGA-85-7699-01 7 112407784 112407784 C A TMEM168 Missense_Mutation p.R521L 0.24 tolerated(0.09) benign(0.045) TCGA-85-7699-01 7 116339278 116339278 C G MET Missense_Mutation p.T47S 0.28 tolerated(0.39) possibly_damaging(0.764) TCGA-85-7699-01 7 120911486 120911486 T A CPED1 Splice_Site p.X956_splice 0.30 TCGA-85-7699-01 7 127014102 127014102 C T ZNF800 Missense_Mutation p.E430K 0.23 tolerated(0.6) benign(0.108) TCGA-85-7699-01 7 135368877 135368877 C A SLC13A4 Missense_Mutation p.D580Y 0.34 deleterious(0) probably_damaging(1) TCGA-85-7699-01 7 137330246 137330246 T A DGKI Missense_Mutation p.Q259L 0.28 deleterious(0.03) probably_damaging(0.997) TCGA-85-7699-01 7 148767666 148767666 G A ZNF786 Missense_Mutation p.A733V 0.36 tolerated(0.07) probably_damaging(0.92) TCGA-85-7699-01 7 154876283 154876283 C A HTR5A 3'UTR 0.25 TCGA-85-7699-01 7 33644816 33644816 C G BBS9 Missense_Mutation p.P881R 0.21 deleterious_low_confidence(0.01) benign(0.193) TCGA-85-7699-01 7 37927978 37927978 T C NME8 Silent p.P449P 0.36 TCGA-85-7699-01 7 4900259 4900259 C A PAPOLB Missense_Mutation p.V394L 0.03 deleterious(0) probably_damaging(0.994) TCGA-85-7699-01 7 50682467 50682467 C A GRB10 Missense_Mutation p.K365N 0.28 deleterious(0) probably_damaging(1) TCGA-85-7699-01 7 73151427 73151427 C A ABHD11 Missense_Mutation p.R216L 0.33 deleterious(0.03) probably_damaging(0.912) TCGA-85-7699-01 7 81386526 81386526 G T HGF Missense_Mutation p.S154Y 0.35 deleterious(0.02) probably_damaging(0.994) TCGA-85-7699-01 7 82584741 82584741 C T PCLO Missense_Mutation p.R1843H 0.42 unknown(0) TCGA-85-7699-01 7 87774512 87774512 G A ADAM22 Splice_Site p.X464_splice 0.41 TCGA-85-7699-01 8 110257711 110257711 C A NUDCD1 Splice_Site p.X434_splice 0.20 TCGA-85-7699-01 8 110453588 110453588 C T PKHD1L1 Missense_Mutation p.T1395I 0.26 deleterious(0.01) probably_damaging(0.995) TCGA-85-7699-01 8 113697836 113697836 G T CSMD3 Missense_Mutation p.L761I 0.18 tolerated(0.1) probably_damaging(0.999) TCGA-85-7699-01 8 120430330 120430330 G A NOV Missense_Mutation p.V115I 0.27 tolerated(0.38) benign(0.02) TCGA-85-7699-01 8 120598444 120598444 C A ENPP2 Missense_Mutation p.R502L 0.36 deleterious(0.02) probably_damaging(0.917) TCGA-85-7699-01 8 144940653 144940653 C T EPPK1 Missense_Mutation p.G2257S 0.06 probably_damaging(0.999) TCGA-85-7699-01 8 19805809 19805809 C T LPL Silent p.F69F 0.32 TCGA-85-7699-01 8 25365208 25365208 T C CDCA2 Missense_Mutation p.L1009P 0.24 tolerated(0.14) benign(0.139) TCGA-85-7699-01 8 85441776 85441776 G T RALYL Nonsense_Mutation p.G87* 0.31 TCGA-85-7699-01 8 9627628 9627628 C A TNKS Missense_Mutation p.F1251L 0.27 tolerated(1) probably_damaging(0.988) TCGA-85-7699-01 8 99140741 99140741 A G POP1 Silent p.R153R 0.41 TCGA-85-7699-01 9 100887167 100887167 C A CORO2A Silent p.R489R 0.38 TCGA-85-7699-01 9 104071704 104071704 A T LPPR1 Missense_Mutation p.K199N 0.20 deleterious(0) probably_damaging(0.984) TCGA-85-7699-01 9 114304278 114304278 G A ZNF483 Missense_Mutation p.G355R 0.32 tolerated(0.09) probably_damaging(0.956) TCGA-85-7699-01 9 135171301 135171301 G C SETX Missense_Mutation p.L2022V 0.19 tolerated(0.37) possibly_damaging(0.491) TCGA-85-7699-01 9 21971029 21971029 C T CDKN2A Nonsense_Mutation p.W110* 0.36 TCGA-85-7699-01 9 35313939 35313939 G T UNC13B Missense_Mutation p.A374S 0.07 tolerated_low_confidence(0.26) benign(0.013) TCGA-85-7699-01 9 35660323 35660323 G C ARHGEF39 3'UTR 0.22 TCGA-85-7699-01 9 77390944 77390944 G C TRPM6 Nonsense_Mutation p.Y1086* 0.03 TCGA-85-7699-01 9 79320853 79320853 C T PRUNE2 Missense_Mutation p.A2113T 0.21 deleterious(0.04) benign(0.022) TCGA-85-7699-01 9 82324607 82324607 G C TLE4 Missense_Mutation p.G445R 0.30 deleterious(0) probably_damaging(0.994) TCGA-85-7699-01 9 90535334 90535334 C A SPATA31C1 RNA 0.26 TCGA-85-7699-01 9 93658029 93658029 G A SYK 3'UTR 0.43 TCGA-85-7699-01 X 12735036 12735036 G A FRMPD4 Missense_Mutation p.E820K 0.58 deleterious(0) probably_damaging(0.999) TCGA-85-7699-01 X 12735105 12735105 G A FRMPD4 Missense_Mutation p.D843N 0.62 tolerated(0.25) benign(0.019) TCGA-85-7699-01 X 17047683 17047683 C G REPS2 Silent p.P236P 0.45 TCGA-85-7699-01 X 3238736 3238736 T C MXRA5 Missense_Mutation p.T1664A 0.03 tolerated(0.11) benign(0.006) TCGA-85-7699-01 X 35820895 35820895 G A MAGEB16 Silent p.L194L 0.06 TCGA-85-7699-01 X 69263510 69263510 C A AWAT2 Missense_Mutation p.C97F 0.56 tolerated(0.37) benign(0) TCGA-85-7699-01 X 69478755 69478755 G A P2RY4 Silent p.R240R 0.62 TCGA-85-7710-01 10 44112097 44112097 C G ZNF485 Missense_Mutation p.I202M 0.35 tolerated(0.05) possibly_damaging(0.521) TCGA-85-7710-01 10 46967428 46967428 G T SYT15 Missense_Mutation p.Q217K 0.13 deleterious(0) probably_damaging(0.996) TCGA-85-7710-01 11 105782636 105782636 C T GRIA4 Intron 0.39 TCGA-85-7710-01 11 105782637 105782637 A T GRIA4 Intron 0.39 TCGA-85-7710-01 11 109294545 109294545 G A C11orf87 Silent p.L62L 0.15 TCGA-85-7710-01 11 124735498 124735498 C A ROBO3 Missense_Mutation p.L9M 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-85-7710-01 11 13391235 13391235 C T ARNTL Silent p.F247F 0.33 TCGA-85-7710-01 11 27389535 27389535 T A LGR4 Missense_Mutation p.E912V 0.37 deleterious(0.03) possibly_damaging(0.556) TCGA-85-7710-01 11 32956926 32956926 C G QSER1 Missense_Mutation p.S1245R 0.35 deleterious(0) benign(0.243) TCGA-85-7710-01 11 5153220 5153220 G A OR52A5 Missense_Mutation p.T218I 0.34 tolerated(0.15) benign(0.02) TCGA-85-7710-01 11 56310614 56310614 T C OR5M11 Silent p.L40L 0.34 TCGA-85-7710-01 11 61404877 61404877 C A RPLP0P2 RNA 0.33 TCGA-85-7710-01 11 64116894 64116894 A T CCDC88B Missense_Mutation p.Q903L 0.28 deleterious(0.02) benign(0.01) TCGA-85-7710-01 11 65273295 65273295 A G MALAT1 RNA 0.30 TCGA-85-7710-01 11 70332381 70332381 C T SHANK2 Missense_Mutation p.M1340I 0.33 tolerated(0.31) benign(0) TCGA-85-7710-01 11 763486 763486 G A TALDO1 Missense_Mutation p.D202N 0.26 tolerated(0.19) benign(0.083) TCGA-85-7710-01 11 99872870 99872870 T A CNTN5 Splice_Site p.X327_splice 0.44 TCGA-85-7710-01 12 107125982 107125982 C T RFX4 Missense_Mutation p.R485W 0.40 deleterious(0.03) benign(0.117) TCGA-85-7710-01 12 11183242 11183242 C T TAS2R31 Silent p.V231V 0.39 TCGA-85-7710-01 12 2656662 2656662 T A CACNA1C Intron 0.23 TCGA-85-7710-01 12 40040690 40040690 G A C12orf40 Silent p.Q128Q 0.33 TCGA-85-7710-01 12 52699928 52699928 C G KRT86 Missense_Mutation p.L371V 0.40 deleterious(0) probably_damaging(0.996) TCGA-85-7710-01 12 52760950 52760950 G A KRT85 Silent p.F80F 0.27 TCGA-85-7710-01 12 7242239 7242239 T A C1R Missense_Mutation p.Y171F 0.28 tolerated(0.08) probably_damaging(0.999) TCGA-85-7710-01 12 9222387 9222387 C T A2M Missense_Mutation p.S1406N 0.28 tolerated(0.21) benign(0.013) TCGA-85-7710-01 12 93870787 93870787 A G MRPL42 Missense_Mutation p.Y43C 0.34 tolerated(0.11) benign(0.078) TCGA-85-7710-01 13 111319788 111319788 G A CARS2 Missense_Mutation p.S273L 0.32 deleterious(0) probably_damaging(0.938) TCGA-85-7710-01 13 26133142 26133142 C T ATP8A2 Missense_Mutation p.T432M 0.20 deleterious(0) probably_damaging(0.994) TCGA-85-7710-01 13 48934164 48934164 C T RB1 Nonsense_Mutation p.Q207* 0.60 TCGA-85-7710-01 13 51936101 51936101 C T SERPINE3 Missense_Mutation p.H415Y 0.75 tolerated_low_confidence(0.37) benign(0.008) TCGA-85-7710-01 13 73333898 73333898 A G DIS3 3'UTR 0.81 TCGA-85-7710-01 13 76445199 76445200 - G C13orf45 5'UTR 0.36 TCGA-85-7710-01 14 100173975 100173975 T C CYP46A1 Missense_Mutation p.M218T 0.36 tolerated(0.09) benign(0.017) TCGA-85-7710-01 14 101200861 101200861 C T DLK1 Silent p.S260S 0.45 TCGA-85-7710-01 14 103803153 103803153 C T EIF5 Silent p.L98L 0.33 TCGA-85-7710-01 14 105243078 105243078 G A AKT1 Missense_Mutation p.R69W 0.34 deleterious(0) possibly_damaging(0.69) TCGA-85-7710-01 14 20248908 20248908 A T OR4M1 Missense_Mutation p.I143F 0.16 tolerated(0.71) benign(0.126) TCGA-85-7710-01 14 20444114 20444114 G T OR4K15 Missense_Mutation p.R146L 0.38 deleterious(0) possibly_damaging(0.903) TCGA-85-7710-01 14 24641967 24641967 G C REC8 Silent p.L34L 0.35 TCGA-85-7710-01 14 24647373 24647373 T G REC8 Missense_Mutation p.I313S 0.30 deleterious(0) probably_damaging(0.986) TCGA-85-7710-01 14 42356496 42356496 C T LRFN5 Missense_Mutation p.A223V 0.39 deleterious(0.05) benign(0.157) TCGA-85-7710-01 14 53250179 53250179 A G GNPNAT1 Missense_Mutation p.L60P 0.36 deleterious(0) possibly_damaging(0.882) TCGA-85-7710-01 14 72926370 72926370 G A RGS6 Missense_Mutation p.E125K 0.41 deleterious(0.02) benign(0.358) TCGA-85-7710-01 14 94772463 94772463 G T SERPINA6 Missense_Mutation p.T326N 0.31 tolerated(0.11) benign(0.018) TCGA-85-7710-01 15 30012151 30012151 C A TJP1 Missense_Mutation p.V945F 0.33 deleterious_low_confidence(0.01) benign(0.444) TCGA-85-7710-01 15 44211704 44211704 C T FRMD5 Silent p.V94V 0.35 TCGA-85-7710-01 15 51510743 51510743 C G CYP19A1 Missense_Mutation p.K246N 0.31 tolerated(0.08) possibly_damaging(0.66) TCGA-85-7710-01 15 51772262 51772262 C T DMXL2 Silent p.A2213A 0.40 TCGA-85-7710-01 15 54803983 54803983 G A UNC13C Silent p.L1804L 0.36 TCGA-85-7710-01 15 75586785 75586785 T A GOLGA6D Missense_Mutation p.V684E 0.24 tolerated(0.1) possibly_damaging(0.754) TCGA-85-7710-01 15 85327935 85327935 C T ZNF592 Missense_Mutation p.P677S 0.27 tolerated(0.27) benign(0.002) TCGA-85-7710-01 16 17292252 17292252 C A XYLT1 Missense_Mutation p.R369L 0.42 deleterious(0) probably_damaging(0.998) TCGA-85-7710-01 16 47733173 47733173 C T PHKB Silent p.L1060L 0.29 TCGA-85-7710-01 16 57144766 57144766 C A CPNE2 Silent p.R38R 0.31 TCGA-85-7710-01 16 58301439 58301439 G A CCDC113 Silent p.L280L 0.26 TCGA-85-7710-01 16 67572392 67572392 G C FAM65A Missense_Mutation p.A35P 0.45 tolerated(0.1) probably_damaging(0.935) TCGA-85-7710-01 16 81211562 81211562 C T PKD1L2 Intron 0.31 TCGA-85-7710-01 16 84213127 84213127 T A TAF1C Missense_Mutation p.Q677L 0.20 tolerated(0.15) benign(0.047) TCGA-85-7710-01 16 84270640 84270640 C - KCNG4 Frame_Shift_Del p.G151Afs*16 0.24 TCGA-85-7710-01 17 36486158 36486158 C T GPR179 Silent p.R1098R 0.33 TCGA-85-7710-01 17 56233012 56233012 G A OR4D1 Silent p.L166L 0.35 TCGA-85-7710-01 17 61562329 61562329 A G ACE Intron 0.38 TCGA-85-7710-01 17 7306445 7306445 C G TMEM256 Missense_Mutation p.Q94H 0.53 tolerated(0.1) probably_damaging(0.992) TCGA-85-7710-01 17 7306642 7306642 C G TMEM256 Missense_Mutation p.R62T 0.52 deleterious(0.01) possibly_damaging(0.534) TCGA-85-7710-01 17 7578461 7578461 C A TP53 Missense_Mutation p.V157F 0.57 deleterious(0) probably_damaging(0.997) TCGA-85-7710-01 17 76094590 76094590 C A TNRC6C Silent p.P1527P 0.29 TCGA-85-7710-01 17 79479331 79479331 C T ACTG1 Missense_Mutation p.C17Y 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-85-7710-01 18 3067362 3067362 A G MYOM1 Silent p.Y1652Y 0.39 TCGA-85-7710-01 18 31709919 31709919 G A NOL4 Silent p.D110D 0.26 TCGA-85-7710-01 18 48255642 48255642 G C MAPK4 Missense_Mutation p.Q394H 0.31 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-85-7710-01 18 54605821 54605821 A T WDR7 Missense_Mutation p.T1297S 0.38 tolerated(1) benign(0.005) TCGA-85-7710-01 19 15795683 15795683 A G CYP4F12 Missense_Mutation p.M326V 0.41 deleterious(0) possibly_damaging(0.633) TCGA-85-7710-01 19 16631144 16631144 C G C19orf44 3'UTR 0.25 TCGA-85-7710-01 19 17918928 17918928 G A B3GNT3 Silent p.A104A 0.35 TCGA-85-7710-01 19 19010467 19010467 C A COPE 3'UTR 0.42 TCGA-85-7710-01 19 21990355 21990355 A G ZNF43 3'UTR 0.50 TCGA-85-7710-01 19 30934917 30934917 C A ZNF536 Missense_Mutation p.R150S 0.21 deleterious(0) probably_damaging(0.999) TCGA-85-7710-01 19 36673314 36673314 C - ZNF565 3'UTR 0.25 TCGA-85-7710-01 19 38708435 38708435 C T DPF1 Intron 0.28 TCGA-85-7710-01 19 38990355 38990355 G C RYR1 Missense_Mutation p.G2370R 0.33 benign(0.193) TCGA-85-7710-01 19 46375533 46375533 C T FOXA3 Silent p.S90S 0.27 TCGA-85-7710-01 19 49004740 49004740 A G LMTK3 Missense_Mutation p.Y321H 0.31 probably_damaging(0.993) TCGA-85-7710-01 19 56422002 56422002 T A NLRP13 Nonsense_Mutation p.K737* 0.41 TCGA-85-7710-01 19 57335930 57335930 C T PEG3 Missense_Mutation p.D32N 0.31 deleterious(0.03) benign(0.004) TCGA-85-7710-01 19 58469996 58469996 G T C19orf18 Missense_Mutation p.H208N 0.19 tolerated(0.06) benign(0.023) TCGA-85-7710-01 19 58992116 58992116 C T ZNF446 3'UTR 0.26 TCGA-85-7710-01 19 8188395 8188395 G C FBN3 Missense_Mutation p.A1012G 0.65 tolerated(0.13) benign(0.158) TCGA-85-7710-01 19 8367749 8367749 C G CD320 Missense_Mutation p.E206D 0.36 tolerated(0.22) unknown(0) TCGA-85-7710-01 1 12343398 12343398 C T VPS13D Missense_Mutation p.R1747W 0.34 possibly_damaging(0.898) TCGA-85-7710-01 1 152671609 152671609 C T LCE2A Missense_Mutation p.H78Y 0.23 tolerated_low_confidence(1) unknown(0) TCGA-85-7710-01 1 155103945 155103945 G A EFNA1 Missense_Mutation p.E75K 0.18 deleterious(0.02) benign(0.244) TCGA-85-7710-01 1 157805863 157805863 G C CD5L Silent p.G46G 0.61 TCGA-85-7710-01 1 158390293 158390293 G C OR10K2 Missense_Mutation p.R122G 0.18 deleterious(0) probably_damaging(0.984) TCGA-85-7710-01 1 158639352 158639352 A G SPTA1 Missense_Mutation p.L560P 0.64 deleterious(0) probably_damaging(1) TCGA-85-7710-01 1 159169615 159169615 C A CADM3 Missense_Mutation p.L377M 0.16 deleterious(0.02) probably_damaging(0.982) TCGA-85-7710-01 1 16065161 16065161 A G SLC25A34 Missense_Mutation p.M224V 0.30 deleterious(0) possibly_damaging(0.835) TCGA-85-7710-01 1 167023482 167023482 G C GPA33 3'UTR 0.19 TCGA-85-7710-01 1 174340173 174340173 A T RABGAP1L Nonsense_Mutation p.K508* 0.15 TCGA-85-7710-01 1 175063151 175063151 C G TNN Silent p.V450V 0.16 TCGA-85-7710-01 1 181765842 181765842 C G CACNA1E Missense_Mutation p.R2083G 0.15 deleterious(0) possibly_damaging(0.63) TCGA-85-7710-01 1 186645740 186645740 C A PTGS2 Missense_Mutation p.V277F 0.47 tolerated(0.46) benign(0.012) TCGA-85-7710-01 1 197030142 197030142 A T F13B Missense_Mutation p.V172E 0.25 tolerated(0.06) probably_damaging(0.974) TCGA-85-7710-01 1 215972355 215972355 C - USH2A Frame_Shift_Del p.R3285Gfs*16 0.23 TCGA-85-7710-01 1 216052113 216052113 T G USH2A Missense_Mutation p.N2851H 0.38 benign(0.077) TCGA-85-7710-01 1 243305656 243305656 C A CEP170 Missense_Mutation p.A1341S 0.28 tolerated(0.11) probably_damaging(0.998) TCGA-85-7710-01 1 24662998 24662998 C T GRHL3 Missense_Mutation p.T98M 0.37 tolerated(0.14) benign(0.009) TCGA-85-7710-01 1 247921568 247921568 C G OR1C1 Silent p.A47A 0.27 TCGA-85-7710-01 1 248813959 248813959 G C OR2T27 Missense_Mutation p.T76S 0.12 tolerated(0.05) benign(0.176) TCGA-85-7710-01 1 26689612 26689612 A G ZNF683 Missense_Mutation p.F350L 0.28 deleterious(0) probably_damaging(0.996) TCGA-85-7710-01 1 52734294 52734294 T A ZFYVE9 Missense_Mutation p.L872Q 0.38 tolerated(0.1) possibly_damaging(0.726) TCGA-85-7710-01 1 54644973 54644973 G C CYB5RL Missense_Mutation p.P198R 0.23 deleterious(0.01) possibly_damaging(0.477) TCGA-85-7710-01 1 89520490 89520490 C G GBP1 Missense_Mutation p.E514Q 0.53 tolerated(1) benign(0.018) TCGA-85-7710-01 20 13763703 13763703 C T ESF1 Silent p.K28K 0.40 TCGA-85-7710-01 20 18794751 18794751 G C SCP2D1 Missense_Mutation p.G98R 0.41 deleterious(0) probably_damaging(0.956) TCGA-85-7710-01 20 19977359 19977359 C T RIN2 Missense_Mutation p.S795F 0.47 tolerated(0.11) probably_damaging(0.994) TCGA-85-7710-01 20 35559163 35559163 C A SAMHD1 Missense_Mutation p.G209C 0.34 deleterious(0) probably_damaging(1) TCGA-85-7710-01 20 35749344 35749344 C A MROH8 Missense_Mutation p.G718V 0.23 tolerated(0.2) benign(0.23) TCGA-85-7710-01 20 60503481 60503481 G T CDH4 Missense_Mutation p.G669C 0.34 deleterious(0.01) probably_damaging(0.942) TCGA-85-7710-01 21 27141526 27141526 A G GABPA Missense_Mutation p.T450A 0.46 tolerated_low_confidence(0.27) benign(0) TCGA-85-7710-01 21 34974537 34974537 C A CRYZL1 Intron 0.30 TCGA-85-7710-01 21 47549381 47549381 C T COL6A2 Intron 0.29 TCGA-85-7710-01 22 23029503 23029503 G T IGLV3-25 Missense_Mutation p.Q35H 0.38 deleterious(0.01) probably_damaging(0.954) TCGA-85-7710-01 22 30061002 30061002 G C NF2 Missense_Mutation p.K278N 0.55 deleterious(0) probably_damaging(0.934) TCGA-85-7710-01 22 37333959 37333962 GGAC - CSF2RB Frame_Shift_Del p.E703Dfs*27 0.49 TCGA-85-7710-01 2 132021360 132021360 A T POTEE Missense_Mutation p.N778Y 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-85-7710-01 2 141473650 141473650 T A LRP1B Missense_Mutation p.H1972L 0.27 possibly_damaging(0.537) TCGA-85-7710-01 2 141473651 141473651 G T LRP1B Missense_Mutation p.H1972N 0.26 benign(0.322) TCGA-85-7710-01 2 152432869 152432869 C A NEB Splice_Site p.X5569_splice 0.27 TCGA-85-7710-01 2 178879100 178879100 C T PDE11A Missense_Mutation p.E334K 0.31 deleterious(0.03) probably_damaging(0.973) TCGA-85-7710-01 2 179576677 179576677 C A TTN Missense_Mutation p.V9294F 0.24 TCGA-85-7710-01 2 209116281 209116282 - T IDH1 5'UTR 0.41 TCGA-85-7710-01 2 238270411 238270411 G A COL6A3 Missense_Mutation p.R2043C 0.57 probably_damaging(0.982) TCGA-85-7710-01 2 31621565 31621565 C G XDH Missense_Mutation p.E103Q 0.36 deleterious(0.01) probably_damaging(1) TCGA-85-7710-01 2 90122037 90122037 C A IGKV1D-17 Missense_Mutation p.S85R 0.37 deleterious(0.04) benign(0.397) TCGA-85-7710-01 3 108773710 108773710 C A MORC1 Nonsense_Mutation p.G399* 0.25 TCGA-85-7710-01 3 113375045 113375045 G C KIAA2018 Silent p.L1828L 0.20 TCGA-85-7710-01 3 113375688 113375688 G C KIAA2018 Nonsense_Mutation p.S1614* 0.20 TCGA-85-7710-01 3 113376027 113376027 G C KIAA2018 Missense_Mutation p.S1501C 0.24 possibly_damaging(0.606) TCGA-85-7710-01 3 113955422 113955422 C - ZNF80 Frame_Shift_Del p.G167Efs*10 0.24 TCGA-85-7710-01 3 119306652 119306652 G A ADPRH Missense_Mutation p.R334K 0.28 tolerated(0.39) benign(0.008) TCGA-85-7710-01 3 121361796 121361796 C A HCLS1 Silent p.V144V 0.15 TCGA-85-7710-01 3 121361797 121361797 A G HCLS1 Missense_Mutation p.V144A 0.16 tolerated(0.05) benign(0.418) TCGA-85-7710-01 3 123813667 123813667 G T KALRN 5'UTR 0.25 TCGA-85-7710-01 3 124132427 124132427 G A KALRN Silent p.R817R 0.25 TCGA-85-7710-01 3 142151588 142151588 T C XRN1 Missense_Mutation p.I75V 0.24 deleterious(0) possibly_damaging(0.836) TCGA-85-7710-01 3 14965554 14965554 G A FGD5 Missense_Mutation p.R1326H 0.56 tolerated(0.06) probably_damaging(0.971) TCGA-85-7710-01 3 155282740 155282740 C A PLCH1 Missense_Mutation p.A333S 0.23 deleterious(0.03) probably_damaging(0.996) TCGA-85-7710-01 3 170185017 170185017 G A SLC7A14 Silent p.G714G 0.24 TCGA-85-7710-01 3 178785570 178785570 T C ZMAT3 5'UTR 0.32 TCGA-85-7710-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.20 deleterious(0.02) probably_damaging(0.959) TCGA-85-7710-01 3 184290771 184290771 C T EPHB3 Silent p.L221L 0.26 TCGA-85-7710-01 3 48447201 48447201 T C PLXNB1 Missense_Mutation p.Y2078C 0.73 tolerated(0.06) benign(0.023) TCGA-85-7710-01 3 52556569 52556569 A G STAB1 Splice_Site p.X2204_splice 0.53 TCGA-85-7710-01 3 97736543 97736543 C G GABRR3 RNA 0.13 TCGA-85-7710-01 3 97868572 97868572 T A OR5H14 Missense_Mutation p.L115M 0.64 deleterious(0) probably_damaging(0.994) TCGA-85-7710-01 3 98235712 98235712 G A CLDND1 Silent p.L208L 0.19 TCGA-85-7710-01 4 110661965 110661965 G A CFI 3'UTR 0.44 TCGA-85-7710-01 4 122854100 122854100 G T TRPC3 Missense_Mutation p.R105S 0.35 deleterious_low_confidence(0.02) benign(0.173) TCGA-85-7710-01 4 123113532 123113532 G A KIAA1109 Silent p.Q350Q 0.29 TCGA-85-7710-01 4 13476010 13476010 G A RAB28 Nonsense_Mutation p.Q65* 0.30 TCGA-85-7710-01 4 140299909 140299909 G A NAA15 Splice_Site p.X686_splice 0.33 TCGA-85-7710-01 4 149181267 149181267 G A NR3C2 Missense_Mutation p.S587F 0.27 deleterious(0.01) possibly_damaging(0.485) TCGA-85-7710-01 4 162459322 162459322 C A FSTL5 Missense_Mutation p.K436N 0.36 deleterious(0.01) probably_damaging(0.977) TCGA-85-7710-01 4 183714090 183714090 G A TENM3 Missense_Mutation p.E2089K 0.38 deleterious(0.01) possibly_damaging(0.636) TCGA-85-7710-01 4 57514932 57514932 C A HOPX 3'UTR 0.26 TCGA-85-7710-01 4 73169748 73169748 C T ADAMTS3 Silent p.E770E 0.39 TCGA-85-7710-01 4 88534214 88534214 T C DSPP Silent p.D292D 0.35 TCGA-85-7710-01 4 9828215 9828215 C A SLC2A9 Missense_Mutation p.D477Y 0.22 deleterious(0) possibly_damaging(0.905) TCGA-85-7710-01 5 13839623 13839623 G C DNAH5 Missense_Mutation p.I1908M 0.19 benign(0.308) TCGA-85-7710-01 5 141236898 141236898 C T PCDH1 Missense_Mutation p.G1080S 0.48 tolerated(0.17) probably_damaging(0.999) TCGA-85-7710-01 5 1441594 1441594 C A SLC6A3 Missense_Mutation p.V100F 0.68 deleterious(0) possibly_damaging(0.877) TCGA-85-7710-01 5 149777972 149777972 C G TCOF1 Silent p.T1466T 0.68 TCGA-85-7710-01 5 161530996 161530996 C G GABRG2 Missense_Mutation p.L285V 0.42 tolerated(0.46) probably_damaging(0.997) TCGA-85-7710-01 5 23527353 23527353 C A PRDM9 Missense_Mutation p.P719H 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-85-7710-01 5 26890642 26890642 G C CDH9 Missense_Mutation p.R429G 0.57 deleterious(0.03) possibly_damaging(0.665) TCGA-85-7710-01 5 5318310 5318310 C T ADAMTS16 Missense_Mutation p.P1159S 0.24 tolerated(0.1) benign(0.082) TCGA-85-7710-01 5 57790561 57790561 C T GAPT Silent p.I66I 0.37 TCGA-85-7710-01 5 75427950 75427950 A G SV2C Silent p.S125S 0.47 TCGA-85-7710-01 5 79054599 79054599 C - CMYA5 Frame_Shift_Del p.P3712Lfs*18 0.34 TCGA-85-7710-01 6 26197163 26197163 C T HIST1H3D Missense_Mutation p.E106K 0.77 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-85-7710-01 6 33255271 33255271 G C WDR46 Missense_Mutation p.S247C 0.45 tolerated(0.12) probably_damaging(0.91) TCGA-85-7710-01 6 63990354 63990354 G T LGSN Missense_Mutation p.R368S 0.49 tolerated(0.05) possibly_damaging(0.878) TCGA-85-7710-01 6 7558488 7558488 A G DSP Missense_Mutation p.Y138C 0.68 possibly_damaging(0.872) TCGA-85-7710-01 7 100417835 100417835 C T EPHB4 Missense_Mutation p.G298R 0.31 deleterious(0.03) probably_damaging(0.981) TCGA-85-7710-01 7 100417848 100417848 G C EPHB4 Missense_Mutation p.H293Q 0.32 tolerated(0.31) benign(0.003) TCGA-85-7710-01 7 116830918 116830918 G A ST7 Silent p.G394G 0.32 TCGA-85-7710-01 7 136699940 136699940 T C CHRM2 Missense_Mutation p.S110P 0.31 deleterious(0) possibly_damaging(0.766) TCGA-85-7710-01 7 141762472 141762472 G C MGAM Missense_Mutation p.E1409D 0.29 tolerated(0.12) benign(0.061) TCGA-85-7710-01 7 142045700 142045700 C T TRBV4-2 Silent p.N76N 0.18 TCGA-85-7710-01 7 142983657 142983657 G A TMEM139 Missense_Mutation p.S129N 0.27 tolerated(0.34) benign(0.011) TCGA-85-7710-01 7 143510143 143510143 C A RP11-61L23.2 RNA 0.28 TCGA-85-7710-01 7 150066758 150066758 A T REPIN1 Splice_Site 0.21 TCGA-85-7710-01 7 2625962 2625962 G C IQCE Silent p.L315L 0.15 TCGA-85-7710-01 7 2625963 2625963 G T IQCE Missense_Mutation p.D316Y 0.15 deleterious(0) probably_damaging(0.977) TCGA-85-7710-01 7 44282900 44282900 C G CAMK2B Missense_Mutation p.E184Q 0.39 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-85-7710-01 7 6431649 6431649 C A RAC1 Missense_Mutation p.R68S 0.28 deleterious(0) probably_damaging(0.996) TCGA-85-7710-01 7 81381419 81381419 C T HGF Intron 0.42 TCGA-85-7710-01 7 86542427 86542427 G A KIAA1324L Missense_Mutation p.L609F 0.36 deleterious(0.02) probably_damaging(0.92) TCGA-85-7710-01 8 126021318 126021318 C T SQLE Missense_Mutation p.L310F 0.47 deleterious(0.04) possibly_damaging(0.691) TCGA-85-7710-01 8 139163452 139163452 C T FAM135B Missense_Mutation p.S1089N 0.33 tolerated(1) benign(0) TCGA-85-7710-01 8 142221699 142221699 A T SLC45A4 Missense_Mutation p.F747I 0.24 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-85-7710-01 8 39634581 39634581 A T ADAM2 Missense_Mutation p.C331S 0.46 deleterious(0) probably_damaging(0.996) TCGA-85-7710-01 8 75927073 75927073 A G CRISPLD1 Missense_Mutation p.Y218C 0.45 deleterious(0) probably_damaging(0.996) TCGA-85-7710-01 8 77764315 77764315 C A ZFHX4 Missense_Mutation p.P1720T 0.31 possibly_damaging(0.803) TCGA-85-7710-01 8 77766222 77766222 C T ZFHX4 Silent p.A2355A 0.29 TCGA-85-7710-01 9 105766974 105766974 C T CYLC2 Intron 0.39 TCGA-85-7710-01 9 114454647 114454647 G A C9orf84 Nonsense_Mutation p.Q1140* 0.29 TCGA-85-7710-01 9 15744702 15744702 G T CCDC171 Missense_Mutation p.W827C 0.53 deleterious(0) probably_damaging(1) TCGA-85-7710-01 9 32550848 32550848 C A TOPORS Missense_Mutation p.R41L 0.44 deleterious_low_confidence(0.01) probably_damaging(0.968) TCGA-85-7710-01 9 99694649 99694649 G - NUTM2G Frame_Shift_Del p.R222Gfs*30 0.23 TCGA-85-7710-01 X 101910129 101910129 G T GPRASP1 Nonsense_Mutation p.E430* 0.49 TCGA-85-7710-01 X 103216891 103216891 C T TMSB15B 5'Flank 0.49 TCGA-85-7710-01 X 106793302 106793302 C A FRMPD3 Silent p.L175L 0.54 TCGA-85-7710-01 X 107406250 107406250 C T COL4A6 Missense_Mutation p.G1364D 0.53 probably_damaging(1) TCGA-85-7710-01 X 141291608 141291608 A G MAGEC2 Missense_Mutation p.S56P 0.53 tolerated(0.21) possibly_damaging(0.665) TCGA-85-7710-01 X 1419494 1419494 C G CSF2RA Missense_Mutation p.S307R 0.54 deleterious(0) probably_damaging(0.959) TCGA-85-7710-01 X 144904377 144904377 A G SLITRK2 Missense_Mutation p.Y145C 0.57 deleterious(0) probably_damaging(0.988) TCGA-85-7710-01 X 144904691 144904691 C A SLITRK2 Missense_Mutation p.H250N 0.47 deleterious(0) probably_damaging(0.98) TCGA-85-7710-01 X 17746054 17746054 G A NHS Silent p.R1255R 0.50 TCGA-85-7710-01 X 21550182 21550182 T A CNKSR2 Missense_Mutation p.Y434N 0.29 deleterious(0.04) benign(0.201) TCGA-85-7710-01 X 21674552 21674552 C T KLHL34 Missense_Mutation p.R452H 0.17 tolerated(0.05) possibly_damaging(0.63) TCGA-85-7710-01 X 23020083 23020083 G C DDX53 3'UTR 0.72 TCGA-85-7710-01 X 23412352 23412352 G C PTCHD1 3'UTR 0.53 TCGA-85-7710-01 X 23886787 23886787 T A APOO Missense_Mutation p.Q104L 0.51 deleterious(0) possibly_damaging(0.696) TCGA-85-7710-01 X 27840502 27840502 G T MAGEB10 3'UTR 0.50 TCGA-85-7710-01 X 32472841 32472841 G A DMD Missense_Mutation p.L1181F 0.39 probably_damaging(0.991) TCGA-85-7710-01 X 32663197 32663197 G C DMD Missense_Mutation p.Q345E 0.23 benign(0.34) TCGA-85-7710-01 X 34962543 34962543 G T FAM47B Missense_Mutation p.R532L 0.24 tolerated(1) benign(0) TCGA-85-7710-01 X 38033595 38033595 C T SRPX Nonsense_Mutation p.W56* 0.53 TCGA-85-7710-01 X 38033598 38033598 G A SRPX Missense_Mutation p.P55L 0.54 tolerated(0.17) benign(0.043) TCGA-85-7710-01 X 38033603 38033603 A T SRPX Missense_Mutation p.D53E 0.59 tolerated(1) benign(0.015) TCGA-85-7710-01 X 40448309 40448309 A C ATP6AP2 Missense_Mutation p.I37L 0.44 tolerated(1) benign(0.009) TCGA-85-7710-01 X 47424408 47424408 G T ARAF Missense_Mutation p.A110S 0.43 tolerated(0.06) possibly_damaging(0.665) TCGA-85-7710-01 X 48164282 48164282 T G SSX9 RNA 0.48 TCGA-85-7710-01 X 48681600 48681600 G A HDAC6 Missense_Mutation p.G931R 0.33 tolerated(0.49) benign(0.202) TCGA-85-7710-01 X 48762503 48762503 G A SLC35A2 Missense_Mutation p.S228L 0.47 tolerated(0.13) benign(0.063) TCGA-85-7710-01 X 48838043 48838043 C G GRIPAP1 Missense_Mutation p.D580H 0.23 possibly_damaging(0.849) TCGA-85-7710-01 X 54948648 54948648 C T TRO 5'UTR 0.18 TCGA-85-7710-01 X 54987334 54987334 C A PFKFB1 Missense_Mutation p.Q80H 0.53 possibly_damaging(0.596) TCGA-85-7710-01 X 55033270 55033270 A T APEX2 Missense_Mutation p.Q320L 0.31 deleterious(0.01) benign(0.007) TCGA-85-7710-01 X 64722962 64722962 C A ZC3H12B Missense_Mutation p.T795N 0.51 deleterious(0.02) benign(0.085) TCGA-85-7710-01 X 64722963 64722963 C A ZC3H12B Silent p.T795T 0.50 TCGA-85-7710-01 X 70357715 70357715 G A MED12 Missense_Mutation p.R1989H 0.27 probably_damaging(0.996) TCGA-85-7710-01 X 70387331 70387331 G T NLGN3 Missense_Mutation p.A462S 0.44 tolerated(0.09) probably_damaging(0.999) TCGA-85-7710-01 X 76907720 76907720 G T ATRX Silent p.R1481R 0.45 TCGA-85-7710-01 X 78216594 78216594 G A P2RY10 Missense_Mutation p.V193I 0.27 tolerated(0.05) benign(0.016) TCGA-85-7710-01 X 79698432 79698432 C G FAM46D Missense_Mutation p.Q132E 0.46 tolerated(0.07) benign(0.162) TCGA-85-7710-01 X 84634316 84634316 C G POF1B Silent p.V48V 0.54 TCGA-85-7710-01 X 86772975 86772975 C G KLHL4 Missense_Mutation p.Q27E 0.05 deleterious_low_confidence(0.03) benign(0.346) TCGA-85-7710-01 X 91066264 91066264 C G PCDH11X 5'UTR 0.45 TCGA-85-7710-01 X 91133206 91133206 G T PCDH11X Missense_Mutation p.S656I 0.51 tolerated(0.12) benign(0.016) TCGA-85-7710-01 X 91133403 91133403 G A PCDH11X Missense_Mutation p.D722N 0.28 tolerated(0.15) benign(0.207) TCGA-85-7710-01 X 99931075 99931075 C G SYTL4 Missense_Mutation p.G656R 0.48 deleterious(0) probably_damaging(1) TCGA-85-7843-01 10 116037749 116037749 A T VWA2 Missense_Mutation p.T215S 0.32 tolerated(0.14) benign(0.007) TCGA-85-7843-01 10 129859957 129859957 G A PTPRE Silent p.K201K 0.44 TCGA-85-7843-01 10 31138965 31138965 T G ZNF438 Missense_Mutation p.R123S 0.28 deleterious(0) probably_damaging(0.998) TCGA-85-7843-01 10 3199655 3199655 G A PITRM1 Missense_Mutation p.S440F 0.16 deleterious(0) possibly_damaging(0.897) TCGA-85-7843-01 10 55569075 55569075 T C PCDH15 Missense_Mutation p.K513E 0.31 deleterious_low_confidence(0) unknown(0) TCGA-85-7843-01 10 55943294 55943294 C T PCDH15 Missense_Mutation p.M500I 0.30 tolerated(0.73) benign(0.006) TCGA-85-7843-01 10 62038560 62038560 T C ANK3 Missense_Mutation p.N129S 0.22 possibly_damaging(0.841) TCGA-85-7843-01 10 97442467 97442467 C T TCTN3 Missense_Mutation p.A465T 0.28 tolerated(0.06) possibly_damaging(0.688) TCGA-85-7843-01 10 99140622 99140622 G A RRP12 Silent p.S489S 0.29 TCGA-85-7843-01 11 105850496 105850496 T G GRIA4 3'UTR 0.25 TCGA-85-7843-01 11 113266128 113266128 C T ANKK1 Missense_Mutation p.S227L 0.31 deleterious(0.02) benign(0.232) TCGA-85-7843-01 11 114168707 114168707 C G NNMT Silent p.G63G 0.23 TCGA-85-7843-01 11 114168708 114168708 T A NNMT Missense_Mutation p.S64T 0.23 tolerated(0.24) benign(0.133) TCGA-85-7843-01 11 119535933 119535933 C T PVRL1 Missense_Mutation p.V360M 0.17 deleterious(0.02) possibly_damaging(0.499) TCGA-85-7843-01 11 124489480 124489480 T A PANX3 Missense_Mutation p.S276R 0.54 deleterious(0.01) benign(0.287) TCGA-85-7843-01 11 1264996 1264996 C A MUC5B Missense_Mutation p.L2296M 0.24 unknown(0) TCGA-85-7843-01 11 128839600 128839600 C T ARHGAP32 Silent p.E1822E 0.58 TCGA-85-7843-01 11 128839602 128839602 C A ARHGAP32 Nonsense_Mutation p.E1822* 0.58 TCGA-85-7843-01 11 35211487 35211487 G T CD44 Missense_Mutation p.G181V 0.38 deleterious(0) probably_damaging(0.979) TCGA-85-7843-01 11 46744988 46744988 C A F2 Missense_Mutation p.P160H 0.17 deleterious(0) probably_damaging(1) TCGA-85-7843-01 11 4703825 4703825 A G OR51E2 Silent p.F39F 0.17 TCGA-85-7843-01 11 5221323 5221323 A G OR51V1 Missense_Mutation p.F203S 0.27 deleterious(0) probably_damaging(0.911) TCGA-85-7843-01 11 5462233 5462233 C T OR51I1 Missense_Mutation p.C171Y 0.29 deleterious(0.02) possibly_damaging(0.762) TCGA-85-7843-01 11 56143588 56143588 C A OR8U1 Silent p.T163T 0.06 TCGA-85-7843-01 11 57193590 57193590 T A SLC43A3 Missense_Mutation p.E19V 0.09 deleterious(0) probably_damaging(1) TCGA-85-7843-01 11 57193591 57193591 C A SLC43A3 Nonsense_Mutation p.E19* 0.09 TCGA-85-7843-01 11 58980066 58980066 C A MPEG1 Missense_Mutation p.Q91H 0.17 tolerated(0.15) benign(0.01) TCGA-85-7843-01 11 60233393 60233393 G C MS4A1 Splice_Site p.X113_splice 0.61 TCGA-85-7843-01 11 69995890 69995890 G A ANO1 Missense_Mutation p.E445K 0.06 deleterious(0) probably_damaging(0.999) TCGA-85-7843-01 11 70181715 70181715 C G PPFIA1 Nonsense_Mutation p.S448* 0.04 TCGA-85-7843-01 11 70200417 70200417 C T PPFIA1 Missense_Mutation p.S725F 0.04 tolerated(0.1) benign(0.424) TCGA-85-7843-01 11 71712842 71712842 G A IL18BP Missense_Mutation p.A174T 0.17 tolerated(1) benign(0) TCGA-85-7843-01 11 71724633 71724633 C - NUMA1 Frame_Shift_Del p.V1306Wfs*10 0.16 TCGA-85-7843-01 11 8132458 8132458 C A RIC3 Missense_Mutation p.K299N 0.20 tolerated(0.18) benign(0.005) TCGA-85-7843-01 11 88911456 88911456 G A TYR Missense_Mutation p.C112Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-85-7843-01 11 89916096 89916096 G A NAALAD2 Silent p.V651V 0.19 TCGA-85-7843-01 11 92624011 92624011 A C FAT3 Missense_Mutation p.N4501T 0.10 benign(0) TCGA-85-7843-01 12 103232835 103232835 A T PAH 3'UTR 0.80 TCGA-85-7843-01 12 115118835 115118835 C A TBX3 Missense_Mutation p.R169L 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-85-7843-01 12 119624887 119624887 A T HSPB8 Missense_Mutation p.K142I 0.61 deleterious(0) probably_damaging(1) TCGA-85-7843-01 12 122839808 122839808 G A CLIP1 Missense_Mutation p.L353F 0.60 deleterious(0) probably_damaging(0.993) TCGA-85-7843-01 12 130919374 130919374 C A RIMBP2 Missense_Mutation p.A703S 0.74 tolerated(0.34) benign(0.004) TCGA-85-7843-01 12 271225 271225 G T IQSEC3 Missense_Mutation p.M859I 0.56 tolerated(0.52) benign(0.38) TCGA-85-7843-01 12 4870288 4870288 G T GALNT8 Missense_Mutation p.L446F 0.45 tolerated(0.27) benign(0.004) TCGA-85-7843-01 12 49421106 49421106 C T KMT2D Splice_Site p.X4882_splice 0.61 TCGA-85-7843-01 12 81648755 81648755 A G ACSS3 3'UTR 0.72 TCGA-85-7843-01 12 81648766 81648766 T C ACSS3 3'UTR 0.76 TCGA-85-7843-01 12 88472922 88472922 C G CEP290 Missense_Mutation p.E1771Q 0.12 probably_damaging(0.999) TCGA-85-7843-01 13 20567533 20567533 A G ZMYM2 Silent p.A107A 0.63 TCGA-85-7843-01 13 29608189 29608189 G T MTUS2 Missense_Mutation p.R801S 0.49 deleterious(0) probably_damaging(0.998) TCGA-85-7843-01 13 43462229 43462229 A G EPSTI1 3'UTR 0.22 TCGA-85-7843-01 13 67801384 67801384 C A PCDH9 Missense_Mutation p.G397C 0.20 deleterious(0) probably_damaging(0.995) TCGA-85-7843-01 13 77566137 77566137 G T CLN5 Silent p.G17G 0.59 TCGA-85-7843-01 14 24791283 24791283 G A ADCY4 Missense_Mutation p.R859W 0.28 tolerated(0.33) probably_damaging(0.999) TCGA-85-7843-01 14 24791284 24791284 G T ADCY4 Missense_Mutation p.N858K 0.28 deleterious(0.02) benign(0.007) TCGA-85-7843-01 14 39565244 39565244 T A SEC23A Missense_Mutation p.S27C 0.42 deleterious(0) probably_damaging(0.972) TCGA-85-7843-01 14 58701219 58701219 G A ACTR10 Missense_Mutation p.G402R 0.25 deleterious_low_confidence(0.01) benign(0.4) TCGA-85-7843-01 14 92472199 92472199 T G TRIP11 Missense_Mutation p.K707N 0.30 tolerated(0.05) benign(0.014) TCGA-85-7843-01 14 96707418 96707418 G A BDKRB2 Silent p.L251L 0.10 TCGA-85-7843-01 15 25436459 25436459 G T SNORD115-11 3'Flank 0.28 TCGA-85-7843-01 15 57821014 57821014 G A CGNL1 Splice_Site p.X1067_splice 0.30 TCGA-85-7843-01 15 71185173 71185173 A G LRRC49 5'UTR 0.30 TCGA-85-7843-01 15 73991984 73991984 C G CD276 Missense_Mutation p.L2V 0.13 deleterious_low_confidence(0) benign(0.014) TCGA-85-7843-01 15 78461336 78461336 G C IDH3A Missense_Mutation p.D364H 0.27 tolerated(0.11) possibly_damaging(0.519) TCGA-85-7843-01 15 80454587 80454587 G T FAH Splice_Site p.X122_splice 0.26 TCGA-85-7843-01 15 83346540 83346540 T A AP3B2 Missense_Mutation p.M421L 0.35 tolerated(0.65) benign(0.015) TCGA-85-7843-01 15 99670491 99670491 C A SYNM Silent p.I641I 0.32 TCGA-85-7843-01 16 1306822 1306822 C A TPSD1 Silent p.L93L 0.32 TCGA-85-7843-01 16 14334125 14334125 A G MKL2 Missense_Mutation p.H288R 0.36 deleterious(0.05) probably_damaging(0.935) TCGA-85-7843-01 16 162693 162693 G A NPRL3 Missense_Mutation p.R159C 0.40 deleterious(0.04) probably_damaging(0.999) TCGA-85-7843-01 16 24980022 24980022 A C ARHGAP17 Missense_Mutation p.V115G 0.13 deleterious(0.01) possibly_damaging(0.783) TCGA-85-7843-01 16 30900178 30900178 C G BCL7C Intron 0.33 TCGA-85-7843-01 16 30941456 30941456 G A FBXL19 Silent p.R304R 0.08 TCGA-85-7843-01 16 31106856 31106856 A T VKORC1 5'Flank 0.50 TCGA-85-7843-01 16 50707445 50707445 G A SNX20 Missense_Mutation p.R275C 0.22 deleterious(0.04) possibly_damaging(0.719) TCGA-85-7843-01 16 68104047 68104047 G T DUS2 Nonsense_Mutation p.E189* 0.34 TCGA-85-7843-01 16 68156562 68156562 C T NFATC3 Missense_Mutation p.P259L 0.15 deleterious(0) probably_damaging(0.971) TCGA-85-7843-01 16 69152357 69152357 G C HAS3 3'Flank 0.25 TCGA-85-7843-01 16 70432245 70432245 C G ST3GAL2 Missense_Mutation p.E63D 0.18 benign(0.001) TCGA-85-7843-01 16 76486435 76486435 C T CNTNAP4 Nonsense_Mutation p.Q295* 0.11 TCGA-85-7843-01 16 85952235 85952235 G C IRF8 Missense_Mutation p.G272R 0.19 deleterious(0.02) probably_damaging(1) TCGA-85-7843-01 16 89345802 89345802 T A ANKRD11 Missense_Mutation p.H2383L 0.18 probably_damaging(0.997) TCGA-85-7843-01 17 34416611 34416611 T A CCL3 Missense_Mutation p.S36C 0.23 deleterious(0) probably_damaging(0.964) TCGA-85-7843-01 17 39675034 39675034 C T KRT15 Missense_Mutation p.G16S 0.22 tolerated(0.11) unknown(0) TCGA-85-7843-01 17 56636911 56636911 G A TEX14 Silent p.I1436I 0.13 TCGA-85-7843-01 17 57322840 57322840 T C GDPD1 Missense_Mutation p.V84A 0.42 deleterious(0) probably_damaging(0.966) TCGA-85-7843-01 17 58543668 58543668 T C APPBP2 Missense_Mutation p.K219R 0.14 tolerated(0.81) benign(0.002) TCGA-85-7843-01 17 6902683 6902683 T C ALOX12 Silent p.G235G 0.55 TCGA-85-7843-01 17 6902776 6902776 A G ALOX12 Silent p.K266K 0.32 TCGA-85-7843-01 17 72368733 72368733 A T GPR142 Missense_Mutation p.E461D 0.36 deleterious_low_confidence(0.04) benign(0.007) TCGA-85-7843-01 17 7573976 7573976 T A TP53 Nonsense_Mutation p.K351* 0.49 TCGA-85-7843-01 17 79193768 79193768 G T AZI1 Missense_Mutation p.S30Y 0.69 tolerated(0.06) possibly_damaging(0.854) TCGA-85-7843-01 17 80013953 80013953 G A GPS1 Missense_Mutation p.R344H 0.16 deleterious(0.01) possibly_damaging(0.78) TCGA-85-7843-01 17 8438712 8438712 C G MYH10 Missense_Mutation p.W629C 0.34 probably_damaging(0.999) TCGA-85-7843-01 18 21736321 21736321 G C CABYR Intron 0.16 TCGA-85-7843-01 18 22804680 22804680 C A ZNF521 Missense_Mutation p.A1068S 0.27 tolerated(0.19) benign(0.008) TCGA-85-7843-01 18 247935 247935 G C THOC1 Missense_Mutation p.L234V 0.15 deleterious(0) probably_damaging(1) TCGA-85-7843-01 18 3879237 3879237 C A DLGAP1 Missense_Mutation p.A278S 0.41 tolerated(1) benign(0.007) TCGA-85-7843-01 18 43685309 43685309 G C HAUS1 Missense_Mutation p.Q60H 0.18 deleterious(0.04) probably_damaging(0.982) TCGA-85-7843-01 18 8380407 8380407 T C PTPRM Silent p.N1300N 0.25 TCGA-85-7843-01 19 11892273 11892273 A G ZNF441 Missense_Mutation p.Y545C 0.35 tolerated(0.13) possibly_damaging(0.79) TCGA-85-7843-01 19 12875672 12875672 C A HOOK2 Missense_Mutation p.A595S 0.08 tolerated(0.2) benign(0.145) TCGA-85-7843-01 19 13387886 13387886 G C CACNA1A Missense_Mutation p.I1293M 0.10 benign(0.08) TCGA-85-7843-01 19 15547714 15547714 C T WIZ Silent p.P144P 0.15 TCGA-85-7843-01 19 21132936 21132936 C A ZNF85 Missense_Mutation p.T539K 0.17 tolerated(1) benign(0.001) TCGA-85-7843-01 19 22574412 22574412 C G ZNF98 Missense_Mutation p.G542A 0.30 deleterious(0.03) benign(0.021) TCGA-85-7843-01 19 23405491 23405491 G A ZNF724P Missense_Mutation p.S519L 0.09 deleterious(0.02) probably_damaging(0.945) TCGA-85-7843-01 19 33697114 33697114 T A LRP3 Missense_Mutation p.C480S 0.17 deleterious(0) probably_damaging(0.994) TCGA-85-7843-01 19 36037591 36037591 C T TMEM147 Silent p.S75S 0.15 TCGA-85-7843-01 19 43015779 43015779 C T CEACAM1 Missense_Mutation p.A460T 0.18 tolerated(0.09) benign(0.002) TCGA-85-7843-01 19 53945111 53945111 G A TPM3P9 RNA 0.24 TCGA-85-7843-01 19 54822752 54822752 T C LILRA5 Missense_Mutation p.Y215C 0.19 deleterious(0.01) probably_damaging(0.994) TCGA-85-7843-01 19 55752688 55752689 - T PPP6R1 Frame_Shift_Ins p.L361Afs*10 0.17 TCGA-85-7843-01 19 56416306 56416306 A T NLRP13 Splice_Site p.X873_splice 0.44 TCGA-85-7843-01 19 6734213 6734213 G C GPR108 Silent p.V160V 0.17 TCGA-85-7843-01 19 900098 900098 C T R3HDM4 Missense_Mutation p.R175H 0.30 deleterious(0.01) probably_damaging(0.921) TCGA-85-7843-01 19 9921847 9921847 T A FBXL12 Missense_Mutation p.T236S 0.41 tolerated(1) benign(0.003) TCGA-85-7843-01 1 110050610 110050610 C - AMIGO1 Frame_Shift_Del p.V309Cfs*2 0.10 TCGA-85-7843-01 1 153932651 153932651 C G SLC39A1 Missense_Mutation p.E300Q 0.36 tolerated(0.32) benign(0.012) TCGA-85-7843-01 1 156828386 156828386 C T INSRR Missense_Mutation p.G10R 0.32 tolerated(0.68) benign(0.001) TCGA-85-7843-01 1 157737128 157737128 G T FCRL2 Missense_Mutation p.A352D 0.34 deleterious(0) probably_damaging(0.991) TCGA-85-7843-01 1 157737427 157737427 C A FCRL2 Intron 0.39 TCGA-85-7843-01 1 168282019 168282019 A C TBX19 Missense_Mutation p.S376R 0.17 tolerated(0.1) benign(0.004) TCGA-85-7843-01 1 168282020 168282020 G T TBX19 Missense_Mutation p.S376I 0.17 deleterious(0) benign(0.429) TCGA-85-7843-01 1 16890643 16890643 A G NBPF1 Missense_Mutation p.V1072A 0.08 tolerated_low_confidence(0.1) benign(0.036) TCGA-85-7843-01 1 179526285 179526285 G A NPHS2 Silent p.S205S 0.36 TCGA-85-7843-01 1 180240784 180240784 C A LHX4 Intron 0.44 TCGA-85-7843-01 1 190067114 190067114 C T BRINP3 3'UTR 0.07 TCGA-85-7843-01 1 200959122 200959122 A T KIF21B Missense_Mutation p.L1027Q 0.17 deleterious(0) probably_damaging(0.998) TCGA-85-7843-01 1 207648474 207648474 C A CR2 Missense_Mutation p.P877T 0.22 tolerated(0.39) benign(0.049) TCGA-85-7843-01 1 232162285 232162285 T A DISC1 Missense_Mutation p.D804E 0.27 deleterious(0) possibly_damaging(0.819) TCGA-85-7843-01 1 237791157 237791157 T A RYR2 Missense_Mutation p.S2073T 0.28 possibly_damaging(0.827) TCGA-85-7843-01 1 237870546 237870546 G A RYR2 Missense_Mutation p.G3293E 0.57 benign(0.185) TCGA-85-7843-01 1 248436838 248436838 A T OR2T33 Silent p.A93A 0.29 TCGA-85-7843-01 1 25573395 25573395 C T C1orf63 Silent p.S20S 0.40 TCGA-85-7843-01 1 34123698 34123698 T A CSMD2 Missense_Mutation p.Q1392L 0.12 tolerated(0.09) benign(0.06) TCGA-85-7843-01 1 3806559 3806559 C G C1orf174 Missense_Mutation p.D233H 0.24 deleterious(0.01) probably_damaging(0.984) TCGA-85-7843-01 1 77333230 77333230 G T ST6GALNAC5 5'UTR 0.12 TCGA-85-7843-01 1 8385945 8385945 C T SLC45A1 Silent p.T186T 0.12 TCGA-85-7843-01 20 1277792 1277792 C T SNPH Silent p.R18R 0.17 TCGA-85-7843-01 20 1445066 1445066 C A NSFL1C Silent p.A37A 0.24 TCGA-85-7843-01 20 31571670 31571670 A T SUN5 Missense_Mutation p.V357E 0.16 deleterious(0) probably_damaging(1) TCGA-85-7843-01 20 33297079 33297079 C T TP53INP2 Missense_Mutation p.A55V 0.20 tolerated(0.34) benign(0.011) TCGA-85-7843-01 20 33516603 33516603 T C GSS 3'UTR 0.13 TCGA-85-7843-01 20 45217882 45217882 C T SLC13A3 Silent p.K311K 0.21 TCGA-85-7843-01 20 45644895 45644895 C T EYA2 Missense_Mutation p.T125I 0.21 deleterious(0.03) possibly_damaging(0.735) TCGA-85-7843-01 20 47888078 47888078 C T ZNFX1 Missense_Mutation p.E91K 0.27 tolerated_low_confidence(0.42) benign(0.079) TCGA-85-7843-01 20 49626206 49626206 G T KCNG1 Missense_Mutation p.L224M 0.13 deleterious(0.04) possibly_damaging(0.886) TCGA-85-7843-01 21 10862852 10862852 A T IGHV1OR21-1 Missense_Mutation p.S50C 0.12 deleterious(0) possibly_damaging(0.883) TCGA-85-7843-01 21 15872984 15872984 C A SAMSN1 Nonsense_Mutation p.G280* 0.49 TCGA-85-7843-01 21 18924097 18924097 G T CXADR Missense_Mutation p.D81Y 0.09 deleterious(0) possibly_damaging(0.838) TCGA-85-7843-01 21 30927563 30927563 A T GRIK1 Missense_Mutation p.L806Q 0.51 deleterious(0) probably_damaging(0.996) TCGA-85-7843-01 21 38593882 38593882 C T DSCR3 3'Flank 0.33 TCGA-85-7843-01 22 35661582 35661582 G A HMGXB4 Missense_Mutation p.E401K 0.59 tolerated(0.35) benign(0.01) TCGA-85-7843-01 22 41075592 41075592 C T MCHR1 Missense_Mutation p.P48L 0.39 deleterious_low_confidence(0) benign(0.001) TCGA-85-7843-01 22 46114297 46114297 T G ATXN10 Missense_Mutation p.L218V 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-85-7843-01 22 50655468 50655468 G A SELO Missense_Mutation p.V586M 0.07 deleterious(0.04) possibly_damaging(0.87) TCGA-85-7843-01 2 110303550 110303550 G C SEPT10 Intron 0.28 TCGA-85-7843-01 2 125405520 125405520 C A CNTNAP5 Missense_Mutation p.L687M 0.33 deleterious(0) probably_damaging(0.999) TCGA-85-7843-01 2 125530384 125530384 G C CNTNAP5 Missense_Mutation p.E847Q 0.14 tolerated(0.16) probably_damaging(0.933) TCGA-85-7843-01 2 130832289 130832289 A G POTEF Missense_Mutation p.V919A 0.07 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-85-7843-01 2 152989750 152989750 C G STAM2 Missense_Mutation p.V303L 0.22 tolerated(1) benign(0.001) TCGA-85-7843-01 2 16085942 16085942 G A MYCN Missense_Mutation p.R373Q 0.19 deleterious(0.01) probably_damaging(0.937) TCGA-85-7843-01 2 163693099 163693099 T C KCNH7 Silent p.A85A 0.26 TCGA-85-7843-01 2 166226739 166226739 A G SCN2A Missense_Mutation p.K1260R 0.22 deleterious(0) probably_damaging(0.998) TCGA-85-7843-01 2 179416398 179416398 G T TTN Missense_Mutation p.P30410H 0.19 TCGA-85-7843-01 2 179416399 179416399 G T TTN Missense_Mutation p.P30410T 0.19 TCGA-85-7843-01 2 196799426 196799426 G A DNAH7 Silent p.S1120S 0.27 TCGA-85-7843-01 2 210559878 210559878 C G MAP2 Missense_Mutation p.T995S 0.14 tolerated_low_confidence(0.06) benign(0.035) TCGA-85-7843-01 2 216965118 216965118 G A TMEM169 Silent p.E249E 0.25 TCGA-85-7843-01 2 228883906 228883906 G T SPHKAP Missense_Mutation p.P555Q 0.23 deleterious(0) probably_damaging(0.968) TCGA-85-7843-01 2 230643702 230643702 C A TRIP12 Missense_Mutation p.G1625V 0.31 deleterious(0) probably_damaging(0.999) TCGA-85-7843-01 2 241827905 241827905 C T C2orf54 Missense_Mutation p.G352D 0.30 tolerated(0.37) benign(0.034) TCGA-85-7843-01 2 27685636 27685636 G C IFT172 Missense_Mutation p.Q683E 0.19 tolerated(1) benign(0) TCGA-85-7843-01 2 3200661 3200661 C G TSSC1 Missense_Mutation p.R215P 0.40 deleterious(0) probably_damaging(0.969) TCGA-85-7843-01 2 43452056 43452056 G C ZFP36L2 Missense_Mutation p.A296G 0.27 tolerated_low_confidence(0.44) unknown(0) TCGA-85-7843-01 2 61441575 61441575 C G USP34 Missense_Mutation p.E2768Q 0.19 deleterious(0) probably_damaging(0.998) TCGA-85-7843-01 2 71626712 71626712 C T ZNF638 Silent p.L842L 0.36 TCGA-85-7843-01 2 79253268 79253268 T C REG3G Missense_Mutation p.C17R 0.48 deleterious(0) possibly_damaging(0.86) TCGA-85-7843-01 2 90139368 90139368 G T IGKV1D-16 Missense_Mutation p.A47S 0.20 deleterious(0.04) benign(0.361) TCGA-85-7843-01 2 97427193 97427193 C T CNNM4 Missense_Mutation p.R153W 0.23 tolerated(0.06) benign(0.004) TCGA-85-7843-01 3 101383834 101383834 C T ZBTB11 Missense_Mutation p.A533T 0.34 tolerated(0.51) benign(0.003) TCGA-85-7843-01 3 121340856 121340856 G C FBXO40 Missense_Mutation p.E194Q 0.21 tolerated(0.08) benign(0.406) TCGA-85-7843-01 3 123983388 123983388 C A KALRN Silent p.R101R 0.09 TCGA-85-7843-01 3 1262440 1262440 C T CNTN6 Missense_Mutation p.S42L 0.21 tolerated(0.13) benign(0.076) TCGA-85-7843-01 3 127983570 127983570 C A EEFSEC Silent p.T244T 0.19 TCGA-85-7843-01 3 127983579 127983579 A T EEFSEC Silent p.S247S 0.49 TCGA-85-7843-01 3 128127148 128127148 G T EEFSEC 3'UTR 0.49 TCGA-85-7843-01 3 148458819 148458819 C G AGTR1 5'UTR 0.09 TCGA-85-7843-01 3 148786038 148786038 G A HLTF Silent p.L327L 0.22 TCGA-85-7843-01 3 151599139 151599139 C G SUCNR1 Missense_Mutation p.Q270E 0.05 tolerated(0.59) benign(0.004) TCGA-85-7843-01 3 154146453 154146453 T C GPR149 Missense_Mutation p.T318A 0.72 tolerated(0.11) benign(0.283) TCGA-85-7843-01 3 157082303 157082303 T A VEPH1 Splice_Site p.X376_splice 0.14 TCGA-85-7843-01 3 157131833 157131833 G A VEPH1 Missense_Mutation p.S248L 0.12 tolerated(0.07) benign(0.005) TCGA-85-7843-01 3 160132259 160132259 G A SMC4 Missense_Mutation p.S409N 0.47 tolerated(0.11) benign(0.005) TCGA-85-7843-01 3 170727843 170727843 G C SLC2A2 Missense_Mutation p.L134V 0.17 deleterious(0.03) possibly_damaging(0.79) TCGA-85-7843-01 3 180685901 180685901 G A FXR1 Missense_Mutation p.D421N 0.27 tolerated(0.06) probably_damaging(1) TCGA-85-7843-01 3 182871937 182871937 T G LAMP3 Missense_Mutation p.S98R 0.13 tolerated(0.06) possibly_damaging(0.839) TCGA-85-7843-01 3 183436352 183436352 C T YEATS2 Missense_Mutation p.A88V 0.08 deleterious(0.01) benign(0.36) TCGA-85-7843-01 3 188326958 188326958 G C LPP Missense_Mutation p.G147R 0.24 tolerated(0.31) benign(0.024) TCGA-85-7843-01 3 197422843 197422843 C T KIAA0226 Missense_Mutation p.R456Q 0.21 tolerated(1) benign(0) TCGA-85-7843-01 3 20187837 20187837 G - KAT2B Frame_Shift_Del p.A679Hfs*22 0.29 TCGA-85-7843-01 3 21606146 21606146 G C ZNF385D Missense_Mutation p.H66D 0.16 deleterious(0) possibly_damaging(0.84) TCGA-85-7843-01 3 37368586 37368605 AAAATCAGTGTTTTACAAAG - GOLGA4 Frame_Shift_Del p.I1760Lfs*3 0.22 TCGA-85-7843-01 3 49928700 49928700 C A MST1R Missense_Mutation p.V1192L 0.56 deleterious(0) probably_damaging(0.998) TCGA-85-7843-01 3 52954575 52954575 G A SFMBT1 Silent p.L450L 0.33 TCGA-85-7843-01 4 106157224 106157224 G T TET2 Nonsense_Mutation p.E709* 0.39 TCGA-85-7843-01 4 111397885 111397885 C A ENPEP Missense_Mutation p.H105Q 0.50 tolerated(0.25) benign(0.016) TCGA-85-7843-01 4 123663706 123663706 T A BBS12 Missense_Mutation p.L220Q 0.19 tolerated(0.61) possibly_damaging(0.494) TCGA-85-7843-01 4 145573839 145573839 G A HHIP Missense_Mutation p.S121N 0.25 tolerated(0.27) benign(0.002) TCGA-85-7843-01 4 156631840 156631840 C T GUCY1A3 Missense_Mutation p.H175Y 0.26 tolerated(0.28) possibly_damaging(0.74) TCGA-85-7843-01 4 169353633 169353633 A T DDX60L Missense_Mutation p.Y497N 0.17 deleterious(0) probably_damaging(0.996) TCGA-85-7843-01 4 169433082 169433082 C A PALLD Missense_Mutation p.R143S 0.24 tolerated(0.18) benign(0.097) TCGA-85-7843-01 4 189026535 189026535 C G TRIML2 5'UTR 0.17 TCGA-85-7843-01 4 189064890 189064890 G A TRIML1 Intron 0.23 TCGA-85-7843-01 4 436765 436765 G A ZNF721 Silent p.G497G 0.33 TCGA-85-7843-01 4 46334646 46334646 A T GABRA2 Missense_Mutation p.S81T 0.60 deleterious(0) probably_damaging(0.967) TCGA-85-7843-01 4 49040069 49040069 A C CWH43 Missense_Mutation p.K559Q 0.03 tolerated(0.1) possibly_damaging(0.646) TCGA-85-7843-01 4 66231731 66231731 C A EPHA5 Nonsense_Mutation p.E657* 0.39 TCGA-85-7843-01 4 77300536 77300536 G A CCDC158 Silent p.N312N 0.10 TCGA-85-7843-01 4 91229931 91229931 G T CCSER1 Nonsense_Mutation p.E166* 0.24 TCGA-85-7843-01 4 951729 951729 G A TMEM175 Silent p.V320V 0.38 TCGA-85-7843-01 5 102442503 102442503 C T GIN1 Missense_Mutation p.A84T 0.22 tolerated(0.63) benign(0.014) TCGA-85-7843-01 5 102611991 102611991 G A C5orf30 Missense_Mutation p.G124D 0.07 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-85-7843-01 5 139946900 139946900 G T SLC35A4 Missense_Mutation p.R49L 0.52 tolerated(0.33) benign(0.042) TCGA-85-7843-01 5 16067692 16067692 C T MARCH11 Missense_Mutation p.R366K 0.14 deleterious(0.02) benign(0.122) TCGA-85-7843-01 5 168150005 168150005 G C SLIT3 Missense_Mutation p.L782V 0.47 deleterious(0) probably_damaging(0.997) TCGA-85-7843-01 5 23524627 23524627 G T PRDM9 Missense_Mutation p.A379S 0.15 tolerated(0.43) benign(0.013) TCGA-85-7843-01 5 23526560 23526560 G C PRDM9 Missense_Mutation p.E455Q 0.19 deleterious(0.04) benign(0.362) TCGA-85-7843-01 5 2749497 2749497 T A IRX2 Missense_Mutation p.E218D 0.17 tolerated(0.09) possibly_damaging(0.824) TCGA-85-7843-01 5 32364376 32364376 C A ZFR Missense_Mutation p.M947I 0.11 deleterious(0.01) unknown(0) TCGA-85-7843-01 5 33683986 33683986 T C ADAMTS12 Missense_Mutation p.Y270C 0.29 deleterious(0) probably_damaging(1) TCGA-85-7843-01 5 37107729 37107729 G A C5orf42 Missense_Mutation p.S3190F 0.14 tolerated_low_confidence(0.05) benign(0.059) TCGA-85-7843-01 5 37396658 37396658 G C WDR70 Missense_Mutation p.E160Q 0.15 tolerated(0.31) benign(0.007) TCGA-85-7843-01 5 42718610 42718610 C T GHR Missense_Mutation p.P334L 0.12 deleterious(0.03) possibly_damaging(0.857) TCGA-85-7843-01 5 82817828 82817828 C G VCAN Missense_Mutation p.L1235V 0.32 tolerated(0.26) benign(0.073) TCGA-85-7843-01 5 89979883 89979883 T C GPR98 Missense_Mutation p.F2049L 0.30 probably_damaging(0.95) TCGA-85-7843-01 5 90015963 90015963 G T GPR98 Silent p.V3182V 0.33 TCGA-85-7843-01 6 100896369 100896369 G T SIM1 Silent p.I243I 0.30 TCGA-85-7843-01 6 132059174 132059174 T C ENPP3 Missense_Mutation p.M724T 0.17 deleterious(0.01) benign(0.3) TCGA-85-7843-01 6 144759922 144759922 A T UTRN Missense_Mutation p.Q428L 0.22 deleterious(0.01) possibly_damaging(0.569) TCGA-85-7843-01 6 152443523 152443523 C A SYNE1 3'UTR 0.46 TCGA-85-7843-01 6 152740730 152740730 G A SYNE1 Missense_Mutation p.H1799Y 0.20 benign(0.002) TCGA-85-7843-01 6 167704896 167704896 T C UNC93A 5'UTR 0.20 TCGA-85-7843-01 6 170060857 170060857 G A WDR27 Missense_Mutation p.S344F 0.46 tolerated(0.29) benign(0.087) TCGA-85-7843-01 6 25581529 25581529 G T LRRC16A Silent p.P956P 0.27 TCGA-85-7843-01 6 27420681 27420681 C T ZNF184 Silent p.E219E 0.36 TCGA-85-7843-01 6 30522887 30522887 C A GNL1 Silent p.P107P 0.29 TCGA-85-7843-01 6 32020647 32020647 C T TNXB Nonsense_Mutation p.W2970* 0.30 TCGA-85-7843-01 6 38889194 38889194 T C DNAH8 Missense_Mutation p.L3308S 0.16 probably_damaging(0.982) TCGA-85-7843-01 6 51897963 51897963 C G PKHD1 Missense_Mutation p.G1077R 0.41 deleterious(0.02) probably_damaging(0.977) TCGA-85-7843-01 6 57512586 57512586 C A PRIM2 3'UTR 0.14 TCGA-85-7843-01 6 64394773 64394773 G C PHF3 Missense_Mutation p.A384P 0.23 tolerated_low_confidence(0.24) benign(0.002) TCGA-85-7843-01 6 70098722 70098722 G A BAI3 Nonsense_Mutation p.W1503* 0.33 TCGA-85-7843-01 6 70897834 70897834 G A COL19A1 Missense_Mutation p.G971D 0.21 deleterious(0) probably_damaging(1) TCGA-85-7843-01 6 76380369 76380369 G C SENP6 Missense_Mutation p.S442T 0.14 deleterious(0.03) benign(0.002) TCGA-85-7843-01 7 102453979 102453979 C T FBXL13 Splice_Site p.X673_splice 0.30 TCGA-85-7843-01 7 126173740 126173740 G T GRM8 Missense_Mutation p.R566S 0.19 deleterious(0.05) probably_damaging(0.998) TCGA-85-7843-01 7 137284646 137284646 G T DGKI Silent p.T391T 0.29 TCGA-85-7843-01 7 142641424 142641424 G T KEL Missense_Mutation p.Q493K 0.16 tolerated(0.26) benign(0.06) TCGA-85-7843-01 7 143096776 143096776 T C EPHA1 Missense_Mutation p.Y268C 0.34 deleterious(0) possibly_damaging(0.787) TCGA-85-7843-01 7 54825185 54825185 T C SEC61G Intron 0.57 TCGA-85-7843-01 7 92905554 92905554 G T CCDC132 Silent p.V293V 0.36 TCGA-85-7843-01 7 94183861 94183861 G - CASD1 Frame_Shift_Del p.A701Lfs*8 0.22 TCGA-85-7843-01 8 103324103 103324103 G C UBR5 Missense_Mutation p.L760V 0.18 tolerated(1) possibly_damaging(0.708) TCGA-85-7843-01 8 103358483 103358483 G A UBR5 Silent p.S239S 0.16 TCGA-85-7843-01 8 104337691 104337691 C T FZD6 Missense_Mutation p.H453Y 0.19 tolerated(0.15) possibly_damaging(0.891) TCGA-85-7843-01 8 106815573 106815573 A T ZFPM2 Missense_Mutation p.E1088V 0.14 deleterious(0) probably_damaging(0.974) TCGA-85-7843-01 8 110346636 110346636 G C ENY2 5'UTR 0.33 TCGA-85-7843-01 8 113516176 113516176 G C CSMD3 Silent p.L1642L 0.17 TCGA-85-7843-01 8 139164184 139164184 A C FAM135B Missense_Mutation p.I845R 0.48 deleterious(0.01) benign(0.013) TCGA-85-7843-01 8 139164340 139164340 C A FAM135B Missense_Mutation p.G793V 0.42 tolerated_low_confidence(0.16) benign(0.024) TCGA-85-7843-01 8 139268935 139268935 T C FAM135B Missense_Mutation p.Q122R 0.31 tolerated(0.19) possibly_damaging(0.493) TCGA-85-7843-01 8 144996207 144996207 C A PLEC Silent p.L2731L 0.50 TCGA-85-7843-01 8 52232506 52232506 C A PXDNL Missense_Mutation p.C1446F 0.74 deleterious(0) probably_damaging(1) TCGA-85-7843-01 8 67786788 67786788 C G MCMDC2 Silent p.L84L 0.26 TCGA-85-7843-01 8 72987737 72987737 G T TRPA1 5'UTR 0.21 TCGA-85-7843-01 8 77766049 77766049 G A ZFHX4 Missense_Mutation p.E2298K 0.24 probably_damaging(0.97) TCGA-85-7843-01 8 82583181 82583181 C T IMPA1 Missense_Mutation p.V246I 0.26 tolerated(0.43) benign(0.011) TCGA-85-7843-01 8 89053961 89053961 C A MMP16 Nonsense_Mutation p.E518* 0.17 TCGA-85-7843-01 8 97978247 97978247 G T CPQ Nonsense_Mutation p.E312* 0.12 TCGA-85-7843-01 9 115760577 115760577 C T ZNF883 RNA 0.55 TCGA-85-7843-01 9 133768918 133768918 G A QRFP Missense_Mutation p.A103V 0.47 tolerated(0.09) benign(0.03) TCGA-85-7843-01 9 138590895 138590895 G A SOHLH1 Missense_Mutation p.A48V 0.26 deleterious(0.01) benign(0.021) TCGA-85-7843-01 9 215247 215247 C G C9orf66 Missense_Mutation p.E50D 0.33 tolerated_low_confidence(0.3) benign(0.388) TCGA-85-7843-01 9 33001605 33001605 G T APTX 5'UTR 0.15 TCGA-85-7843-01 9 34257432 34257432 C T KIF24 Missense_Mutation p.G725S 0.17 deleterious(0.05) benign(0.167) TCGA-85-7843-01 9 96398727 96398727 G T PHF2 Silent p.P73P 0.27 TCGA-85-7843-01 X 100511224 100511224 C T DRP2 Silent p.I788I 0.41 TCGA-85-7843-01 X 106171740 106171740 C A CLDN2 Silent p.A94A 0.59 TCGA-85-7843-01 X 119509359 119509359 G C ATP1B4 Missense_Mutation p.G232A 0.39 deleterious(0) probably_damaging(1) TCGA-85-7843-01 X 134947967 134947967 G T CT45A5 Missense_Mutation p.Q120K 0.14 tolerated(0.38) benign(0) TCGA-85-7843-01 X 140994370 140994370 G C MAGEC1 Missense_Mutation p.E394Q 0.23 tolerated_low_confidence(0.15) benign(0.403) TCGA-85-7843-01 X 150780171 150780171 T C PASD1 Silent p.D51D 0.35 TCGA-85-7843-01 X 151366223 151366223 G C GABRA3 Silent p.L271L 0.27 TCGA-85-7843-01 X 50054281 50054281 A T CCNB3 Missense_Mutation p.T1038S 0.76 deleterious(0.03) benign(0.001) TCGA-85-7843-01 X 84634226 84634226 G C POF1B Silent p.L78L 0.43 TCGA-85-7843-01 X 91090735 91090735 G C PCDH11X Missense_Mutation p.E78Q 0.67 deleterious(0.02) benign(0.199) TCGA-85-7843-01 X 91456383 91456383 G C PCDH11X Missense_Mutation p.E1015Q 0.32 tolerated(0.19) benign(0.004) TCGA-85-7844-01 10 101978788 101978789 - A CHUK Frame_Shift_Ins p.L222Ffs*11 0.16 TCGA-85-7844-01 10 129913705 129913705 C A MKI67 Missense_Mutation p.V323L 0.38 tolerated(0.49) benign(0.24) TCGA-85-7844-01 10 29818730 29818730 C T SVIL Missense_Mutation p.R717H 0.16 tolerated(0.08) benign(0.028) TCGA-85-7844-01 10 55581937 55581937 G T PCDH15 Missense_Mutation p.T1852N 0.22 deleterious_low_confidence(0.03) unknown(0) TCGA-85-7844-01 10 61572504 61572504 T A CCDC6 Nonsense_Mutation p.R246* 0.20 TCGA-85-7844-01 10 89693002 89693003 - A PTEN Frame_Shift_Ins p.V166Sfs*14 0.19 TCGA-85-7844-01 10 97402884 97402884 T A ALDH18A1 Silent p.T56T 0.25 TCGA-85-7844-01 11 108384059 108384059 T A EXPH5 Missense_Mutation p.E725D 0.18 tolerated(0.19) probably_damaging(0.986) TCGA-85-7844-01 11 113140768 113140768 T A NCAM1 Intron 0.35 TCGA-85-7844-01 11 118211111 118211111 T C CD3D Missense_Mutation p.T85A 0.29 tolerated(0.88) benign(0.002) TCGA-85-7844-01 11 119027333 119027333 C A ABCG4 Silent p.P290P 0.30 TCGA-85-7844-01 11 120989034 120989034 G T TECTA Silent p.G270G 0.26 TCGA-85-7844-01 11 1214826 1214826 G T MUC5AC RNA 0.13 TCGA-85-7844-01 11 123676426 123676426 G T OR6M1 Missense_Mutation p.T211N 0.31 deleterious(0) probably_damaging(0.993) TCGA-85-7844-01 11 124413440 124413440 G T OR8B12 Silent p.T37T 0.34 TCGA-85-7844-01 11 14992718 14992718 G T CALCA Silent p.S7S 0.09 TCGA-85-7844-01 11 1578643 1578643 G A DUSP8 Missense_Mutation p.P328L 0.18 tolerated(0.31) benign(0.003) TCGA-85-7844-01 11 1587003 1587003 G A DUSP8 Silent p.S18S 0.15 TCGA-85-7844-01 11 24750774 24750774 T A LUZP2 Missense_Mutation p.I41N 0.14 deleterious(0) probably_damaging(0.994) TCGA-85-7844-01 11 28116243 28116243 T C KIF18A Missense_Mutation p.M144V 0.26 deleterious(0.01) benign(0.301) TCGA-85-7844-01 11 48158680 48158680 T C PTPRJ Missense_Mutation p.S667P 0.36 tolerated(0.2) benign(0.078) TCGA-85-7844-01 11 55658874 55658874 G A TRIM51 Silent p.E375E 0.14 TCGA-85-7844-01 11 56344528 56344528 C T OR5M10 Missense_Mutation p.A224T 0.09 tolerated(0.2) benign(0.17) TCGA-85-7844-01 11 71729335 71729335 C T NUMA1 Missense_Mutation p.R291Q 0.07 probably_damaging(0.997) TCGA-85-7844-01 11 71942195 71942195 G C INPPL1 Missense_Mutation p.G487R 0.21 deleterious(0.04) possibly_damaging(0.774) TCGA-85-7844-01 11 89768507 89768507 G T TRIM49C Missense_Mutation p.W43L 0.44 deleterious(0) possibly_damaging(0.734) TCGA-85-7844-01 11 94328568 94328568 C T PIWIL4 Missense_Mutation p.A415V 0.17 tolerated(0.18) benign(0.001) TCGA-85-7844-01 12 100552747 100552747 G A AC010203.1 5'Flank 0.40 TCGA-85-7844-01 12 12483571 12483571 G A MANSC1 Missense_Mutation p.T229M 0.20 deleterious(0.03) benign(0.074) TCGA-85-7844-01 12 20905358 20905358 A G SLCO1C1 Missense_Mutation p.E713G 0.28 deleterious_low_confidence(0.01) benign(0.007) TCGA-85-7844-01 12 56563333 56563333 C T SMARCC2 Missense_Mutation p.A868T 0.29 deleterious(0) benign(0.312) TCGA-85-7844-01 12 56824055 56824055 T C TIMELESS Missense_Mutation p.Y307C 0.20 deleterious(0) possibly_damaging(0.848) TCGA-85-7844-01 12 57572747 57572747 G A LRP1 Missense_Mutation p.V1561M 0.29 benign(0.075) TCGA-85-7844-01 12 7294715 7294715 A G CLSTN3 Missense_Mutation p.N507S 0.21 tolerated(0.6) benign(0.065) TCGA-85-7844-01 12 78591032 78591032 G A NAV3 Silent p.L2077L 0.26 TCGA-85-7844-01 12 9316729 9316729 C A PZP Missense_Mutation p.G872W 0.20 deleterious(0) probably_damaging(1) TCGA-85-7844-01 13 111995235 111995235 A T TEX29 Silent p.P124P 0.38 TCGA-85-7844-01 14 102483493 102483493 C A DYNC1H1 Nonsense_Mutation p.C2639* 0.20 TCGA-85-7844-01 14 20404355 20404355 T G OR4K1 Missense_Mutation p.F177C 0.17 deleterious(0) probably_damaging(1) TCGA-85-7844-01 14 22133310 22133310 A G OR4E2 Missense_Mutation p.N5S 0.30 deleterious(0.02) probably_damaging(0.998) TCGA-85-7844-01 14 59930472 59930472 A G GPR135 Silent p.D491D 0.22 TCGA-85-7844-01 15 100269644 100269644 C G LYSMD4 Missense_Mutation p.C193S 0.49 tolerated(0.29) benign(0.122) TCGA-85-7844-01 15 101606262 101606262 G A LRRK1 Missense_Mutation p.D1874N 0.06 tolerated_low_confidence(0.11) benign(0.012) TCGA-85-7844-01 15 101718757 101718757 C T CHSY1 Missense_Mutation p.M415I 0.41 tolerated(0.18) benign(0.088) TCGA-85-7844-01 15 25222953 25222953 T A SNRPN Missense_Mutation p.V150E 0.42 deleterious(0.01) probably_damaging(0.954) TCGA-85-7844-01 15 25325334 25325334 A T SNORD116-14 RNA 0.31 TCGA-85-7844-01 15 28326839 28326839 C A OCA2 Missense_Mutation p.W61L 0.19 tolerated_low_confidence(0.51) benign(0.035) TCGA-85-7844-01 15 42156205 42156205 G C SPTBN5 Silent p.A2312A 0.33 TCGA-85-7844-01 15 44887566 44887566 G T SPG11 Nonsense_Mutation p.S1509* 0.45 TCGA-85-7844-01 15 48518734 48518734 T G SLC12A1 Intron 0.35 TCGA-85-7844-01 15 99023856 99023856 C A FAM169B Missense_Mutation p.V53F 0.33 deleterious(0) probably_damaging(0.982) TCGA-85-7844-01 16 31234210 31234210 T A TRIM72 Missense_Mutation p.I268N 0.20 deleterious(0.04) probably_damaging(0.976) TCGA-85-7844-01 16 3778373 3778373 C A CREBBP Missense_Mutation p.M2225I 0.14 unknown(0) TCGA-85-7844-01 16 67029636 67029636 C T CES4A Missense_Mutation p.P55L 0.35 deleterious(0.03) benign(0.221) TCGA-85-7844-01 16 71318665 71318665 T C CMTR2 Missense_Mutation p.K387E 0.28 tolerated(1) benign(0.001) TCGA-85-7844-01 17 12043154 12043154 A C MAP2K4 Splice_Site p.X347_splice 0.07 TCGA-85-7844-01 17 15983942 15983942 G A NCOR1 Nonsense_Mutation p.Q1093* 0.28 TCGA-85-7844-01 17 18024956 18024956 G T MYO15A Missense_Mutation p.G948C 0.42 unknown(0) TCGA-85-7844-01 17 27620876 27620876 C T NUFIP2 Missense_Mutation p.A68T 0.25 tolerated(0.48) possibly_damaging(0.763) TCGA-85-7844-01 17 33255116 33255116 A G CCT6B Missense_Mutation p.I515T 0.16 deleterious(0.03) benign(0.196) TCGA-85-7844-01 17 53797930 53797930 C T TMEM100 3'UTR 0.28 TCGA-85-7844-01 17 72322380 72322380 G C KIF19 5'UTR 0.32 TCGA-85-7844-01 17 75398470 75398470 G T SEPT9 Nonsense_Mutation p.E136* 0.27 TCGA-85-7844-01 17 7577106 7577106 G A TP53 Missense_Mutation p.P278S 0.41 deleterious(0.03) probably_damaging(1) TCGA-85-7844-01 17 78201692 78201693 - C SLC26A11 Frame_Shift_Ins p.V225Rfs*54 0.18 TCGA-85-7844-01 17 78326928 78326928 C T RNF213 Intron 0.19 TCGA-85-7844-01 19 12501914 12501914 G A ZNF799 Missense_Mutation p.S433F 0.23 tolerated(0.7) benign(0.005) TCGA-85-7844-01 19 15565468 15565468 G A RASAL3 Missense_Mutation p.P653L 0.26 tolerated(0.72) benign(0.157) TCGA-85-7844-01 19 15769550 15769550 T G CYP4F3 Missense_Mutation p.F443C 0.18 deleterious(0.02) possibly_damaging(0.778) TCGA-85-7844-01 19 17644411 17644411 G T FAM129C Missense_Mutation p.G141C 0.21 tolerated(0.14) possibly_damaging(0.896) TCGA-85-7844-01 19 35828714 35828714 G A CD22 Missense_Mutation p.D259N 0.12 tolerated(0.21) benign(0.034) TCGA-85-7844-01 19 36216153 36216153 G A KMT2B Missense_Mutation p.M1187I 0.24 benign(0.38) TCGA-85-7844-01 19 36303144 36303144 A G PRODH2 Silent p.A210A 0.14 TCGA-85-7844-01 19 4431971 4431971 A G CHAF1A Missense_Mutation p.H657R 0.17 tolerated(0.16) benign(0.416) TCGA-85-7844-01 19 46201934 46201934 G T QPCTL Missense_Mutation p.G255C 0.18 deleterious(0) probably_damaging(0.998) TCGA-85-7844-01 19 47823482 47823482 G T C5AR1 Missense_Mutation p.A150S 0.19 tolerated(0.44) benign(0.038) TCGA-85-7844-01 19 49142601 49142601 C A CA11 Missense_Mutation p.W252C 0.32 deleterious(0) benign(0.338) TCGA-85-7844-01 19 54313273 54313273 T - NLRP12 Frame_Shift_Del p.E547Gfs*21 0.15 TCGA-85-7844-01 19 5737153 5737153 A G CATSPERD Missense_Mutation p.I132M 0.18 deleterious(0.01) possibly_damaging(0.824) TCGA-85-7844-01 19 9047542 9047542 C - MUC16 Frame_Shift_Del p.T11364Qfs*16 0.13 TCGA-85-7844-01 1 142713382 142713382 T A RP11-417J8.6 RNA 0.22 TCGA-85-7844-01 1 149939235 149939235 A G OTUD7B Silent p.V162V 0.33 TCGA-85-7844-01 1 158605717 158605717 C A SPTA1 Missense_Mutation p.E1806D 0.06 tolerated(0.41) possibly_damaging(0.582) TCGA-85-7844-01 1 169094277 169094277 G T ATP1B1 Missense_Mutation p.D128Y 0.13 deleterious(0.01) benign(0.04) TCGA-85-7844-01 1 172526838 172526838 A T SUCO Silent p.I212I 0.28 TCGA-85-7844-01 1 176564577 176564577 C A PAPPA2 Missense_Mutation p.R613S 0.38 deleterious(0.03) probably_damaging(0.981) TCGA-85-7844-01 1 178414721 178414721 A G RASAL2 Silent p.R517R 0.40 TCGA-85-7844-01 1 182852760 182852760 G A DHX9 Missense_Mutation p.V1084I 0.08 tolerated(0.22) benign(0.004) TCGA-85-7844-01 1 184041403 184041403 A T TSEN15 Missense_Mutation p.T156S 0.31 tolerated(0.13) benign(0.339) TCGA-85-7844-01 1 185135744 185135744 C A SWT1 Nonsense_Mutation p.S42* 0.36 TCGA-85-7844-01 1 196971650 196971650 C A CFHR5 Missense_Mutation p.P396T 0.30 deleterious(0) probably_damaging(0.941) TCGA-85-7844-01 1 197113117 197113117 T C ASPM Silent p.L137L 0.10 TCGA-85-7844-01 1 211307312 211307312 G T KCNH1 5'UTR 0.52 TCGA-85-7844-01 1 216462678 216462678 T C USH2A Missense_Mutation p.K639E 0.05 benign(0.211) TCGA-85-7844-01 1 22846666 22846666 G T ZBTB40 Silent p.T982T 0.36 TCGA-85-7844-01 1 237865335 237865335 C T RYR2 Missense_Mutation p.T3142I 0.30 possibly_damaging(0.566) TCGA-85-7844-01 1 24668706 24668706 G C GRHL3 Missense_Mutation p.L383F 0.30 tolerated(0.19) benign(0.009) TCGA-85-7844-01 1 248004647 248004647 G T OR11L1 Silent p.L184L 0.40 TCGA-85-7844-01 1 37267505 37267505 G C GRIK3 Missense_Mutation p.P903A 0.28 deleterious_low_confidence(0.05) benign(0.407) TCGA-85-7844-01 1 41094541 41094541 C A RIMS3 Missense_Mutation p.D219Y 0.24 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-85-7844-01 1 53504660 53504660 A G SCP2 Silent p.K470K 0.21 TCGA-85-7844-01 1 87100033 87100033 G A RP4-651E10.4 Intron 0.19 TCGA-85-7844-01 1 91978796 91978796 A T CDC7 Missense_Mutation p.T252S 0.19 tolerated(0.87) benign(0.003) TCGA-85-7844-01 1 91979595 91979595 G T CDC7 Missense_Mutation p.V305L 0.19 tolerated(0.34) benign(0.018) TCGA-85-7844-01 20 19665876 19665876 C T SLC24A3 Missense_Mutation p.R399W 0.30 deleterious(0) possibly_damaging(0.794) TCGA-85-7844-01 20 2378561 2378561 C A TGM6 Intron 0.25 TCGA-85-7844-01 21 19716330 19716330 C T TMPRSS15 Missense_Mutation p.V407M 0.22 tolerated(0.07) possibly_damaging(0.457) TCGA-85-7844-01 21 31913887 31913887 G T KRTAP19-6 3'UTR 0.23 TCGA-85-7844-01 21 35201966 35201966 C A ITSN1 Missense_Mutation p.P1090T 0.22 tolerated(0.76) benign(0.101) TCGA-85-7844-01 22 23401747 23401747 G A RTDR1 Missense_Mutation p.P314S 0.24 tolerated(0.55) benign(0.008) TCGA-85-7844-01 22 24123393 24123393 C A MMP11 Missense_Mutation p.P291Q 0.28 deleterious(0.01) possibly_damaging(0.904) TCGA-85-7844-01 22 32635061 32635061 C A SLC5A4 Missense_Mutation p.G165V 0.23 deleterious(0) probably_damaging(0.982) TCGA-85-7844-01 22 33712190 33712190 A G LARGE Silent p.Y444Y 0.20 TCGA-85-7844-01 22 46931569 46931569 C A CELSR1 Missense_Mutation p.S500I 0.26 deleterious(0) possibly_damaging(0.747) TCGA-85-7844-01 2 103379107 103379107 T C TMEM182 Missense_Mutation p.V65A 0.25 tolerated(0.12) benign(0.001) TCGA-85-7844-01 2 131520539 131520539 C A AMER3 Silent p.P298P 0.39 TCGA-85-7844-01 2 131985855 131985855 G A POTEE Missense_Mutation p.S319N 0.13 deleterious_low_confidence(0) possibly_damaging(0.517) TCGA-85-7844-01 2 136396191 136396191 C G R3HDM1 Missense_Mutation p.L303V 0.12 tolerated(0.68) benign(0.011) TCGA-85-7844-01 2 141081545 141081545 C G LRP1B Missense_Mutation p.G4144A 0.15 possibly_damaging(0.794) TCGA-85-7844-01 2 15679362 15679362 G C NBAS Silent p.L166L 0.20 TCGA-85-7844-01 2 172409881 172409881 T C CYBRD1 Missense_Mutation p.L143P 0.10 deleterious(0) probably_damaging(1) TCGA-85-7844-01 2 174777981 174777981 C T SP3 Missense_Mutation p.G616R 0.12 deleterious(0) probably_damaging(0.997) TCGA-85-7844-01 2 179432696 179432696 G T TTN Missense_Mutation p.L26055I 0.27 TCGA-85-7844-01 2 179474285 179474285 A G TTN Missense_Mutation p.V17251A 0.20 TCGA-85-7844-01 2 224629905 224629905 C T AP1S3 Intron 0.21 TCGA-85-7844-01 2 231988269 231988269 A T HTR2B Silent p.G70G 0.28 TCGA-85-7844-01 2 242814480 242814480 G T CXXC11 Missense_Mutation p.G258V 0.29 deleterious(0.01) possibly_damaging(0.852) TCGA-85-7844-01 2 54158985 54158985 G A PSME4 Missense_Mutation p.P435S 0.15 tolerated(0.08) benign(0.186) TCGA-85-7844-01 2 54753668 54753668 G T SPTBN1 Missense_Mutation p.R38L 0.22 deleterious(0) benign(0.442) TCGA-85-7844-01 2 61009891 61009891 C T PAPOLG Silent p.F366F 0.27 TCGA-85-7844-01 2 74743318 74743318 C T TLX2 3'UTR 0.25 TCGA-85-7844-01 3 108672614 108672614 A T GUCA1C 5'UTR 0.16 TCGA-85-7844-01 3 113507668 113507668 A C ATP6V1A Silent p.V275V 0.06 TCGA-85-7844-01 3 121514378 121514378 A G IQCB1 Silent p.Y304Y 0.53 TCGA-85-7844-01 3 124165042 124165042 C T KALRN Silent p.R1114R 0.09 TCGA-85-7844-01 3 157081477 157081477 C T VEPH1 Missense_Mutation p.G471R 0.12 tolerated(0.12) benign(0.003) TCGA-85-7844-01 3 157081479 157081479 C T VEPH1 Missense_Mutation p.R470K 0.11 tolerated(0.66) benign(0) TCGA-85-7844-01 3 173997337 173997337 C A NLGN1 Missense_Mutation p.P516T 0.14 deleterious(0) probably_damaging(0.998) TCGA-85-7844-01 3 183963260 183963260 C A ALG3 Missense_Mutation p.C147F 0.29 deleterious(0.03) benign(0.218) TCGA-85-7844-01 3 185213096 185213096 A G TMEM41A Missense_Mutation p.L94S 0.25 deleterious(0) probably_damaging(0.999) TCGA-85-7844-01 4 102946527 102946527 T A BANK1 Missense_Mutation p.D485E 0.17 tolerated(0.07) probably_damaging(0.996) TCGA-85-7844-01 4 110605789 110605789 T C CCDC109B Missense_Mutation p.I268T 0.11 deleterious(0) benign(0.027) TCGA-85-7844-01 4 126408748 126408748 A T FAT4 Silent p.R4355R 0.19 TCGA-85-7844-01 4 134075460 134075460 A C PCDH10 Splice_Site p.X878_splice 0.18 TCGA-85-7844-01 4 147561733 147561733 A T POU4F2 Missense_Mutation p.T335S 0.23 tolerated(0.75) benign(0.001) TCGA-85-7844-01 4 155490891 155490891 G A FGB Missense_Mutation p.R395K 0.16 tolerated(0.69) benign(0.022) TCGA-85-7844-01 4 162306815 162306815 G T FSTL5 3'UTR 0.31 TCGA-85-7844-01 4 164247685 164247685 G T NPY1R Missense_Mutation p.Q8K 0.32 tolerated(0.68) benign(0) TCGA-85-7844-01 4 183721478 183721478 C T TENM3 Missense_Mutation p.R2692W 0.27 deleterious(0) possibly_damaging(0.876) TCGA-85-7844-01 4 55155234 55155234 C T PDGFRA Missense_Mutation p.H945Y 0.10 tolerated(1) possibly_damaging(0.811) TCGA-85-7844-01 4 70066327 70066327 T A UGT2B11 Missense_Mutation p.K474I 0.30 deleterious(0) probably_damaging(1) TCGA-85-7844-01 4 71845008 71845008 G T MOB1B Missense_Mutation p.Q196H 0.12 tolerated(0.27) benign(0.007) TCGA-85-7844-01 4 74027021 74027021 G C ANKRD17 Missense_Mutation p.P198A 0.09 benign(0.003) TCGA-85-7844-01 4 88534124 88534124 T C DSPP Silent p.D262D 0.20 TCGA-85-7844-01 5 115361919 115361919 G C AQPEP 3'UTR 0.33 TCGA-85-7844-01 5 131321108 131321108 C - ACSL6 Frame_Shift_Del p.G303Afs*24 0.13 TCGA-85-7844-01 5 137593530 137593530 C T GFRA3 Missense_Mutation p.V195I 0.16 tolerated(0.18) benign(0.002) TCGA-85-7844-01 5 139885370 139885370 G C ANKHD1 Missense_Mutation p.L1108F 0.13 possibly_damaging(0.849) TCGA-85-7844-01 5 140558642 140558642 G T PCDHB8 Missense_Mutation p.D343Y 0.10 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-85-7844-01 5 140807475 140807475 G T PCDHGB6 Intron 0.21 TCGA-85-7844-01 5 149511658 149511658 C G PDGFRB Splice_Site p.X376_splice 0.14 TCGA-85-7844-01 5 149771718 149771718 G A TCOF1 Missense_Mutation p.A1166T 0.09 tolerated(0.2) possibly_damaging(0.514) TCGA-85-7844-01 5 156021953 156021953 G T SGCD Missense_Mutation p.V132L 0.29 tolerated(0.2) benign(0.017) TCGA-85-7844-01 5 160033983 160033983 T A ATP10B Silent p.P983P 0.18 TCGA-85-7844-01 5 177421123 177421123 C T PROP1 Missense_Mutation p.S109N 0.18 tolerated(0.62) probably_damaging(0.999) TCGA-85-7844-01 5 24511472 24511472 C A CDH10 Missense_Mutation p.E322D 0.13 tolerated(1) benign(0.003) TCGA-85-7844-01 5 24537609 24537609 T A CDH10 Missense_Mutation p.T136S 0.11 tolerated(0.12) benign(0.021) TCGA-85-7844-01 5 31322955 31322955 G A CDH6 Missense_Mutation p.R638Q 0.08 tolerated(0.11) probably_damaging(0.992) TCGA-85-7844-01 5 31511264 31511264 C G DROSHA Missense_Mutation p.G437A 0.09 tolerated(0.3) benign(0.109) TCGA-85-7844-01 5 41004630 41004630 C A MROH2B Missense_Mutation p.V1338L 0.14 deleterious(0) possibly_damaging(0.821) TCGA-85-7844-01 5 5222997 5222997 G T ADAMTS16 Missense_Mutation p.M567I 0.13 deleterious(0.01) possibly_damaging(0.461) TCGA-85-7844-01 5 78596068 78596068 A G JMY Silent p.V540V 0.26 TCGA-85-7844-01 5 90144622 90144622 G T GPR98 Missense_Mutation p.G5730C 0.18 probably_damaging(0.989) TCGA-85-7844-01 5 94848292 94848292 C T TTC37 Missense_Mutation p.V937I 0.16 deleterious(0) probably_damaging(0.983) TCGA-85-7844-01 6 117708051 117708051 C G ROS1 Splice_Site p.X709_splice 0.12 TCGA-85-7844-01 6 169632142 169632142 G T THBS2 Nonsense_Mutation p.S695* 0.14 TCGA-85-7844-01 6 32024475 32024475 G A TNXB Silent p.H2677H 0.16 TCGA-85-7844-01 6 33372814 33372832 CTGCCGGGTCCGCCCTGTC - KIFC1 Frame_Shift_Del p.V317Gfs*38 0.11 TCGA-85-7844-01 6 38998015 38998015 G A DNAH8 Silent p.T4440T 0.11 TCGA-85-7844-01 6 4087846 4087846 C T C6orf201 5'UTR 0.21 TCGA-85-7844-01 6 46846117 46846117 T - GPR116 Frame_Shift_Del p.D355Tfs*11 0.18 TCGA-85-7844-01 6 49438718 49438718 A G CENPQ Missense_Mutation p.H45R 0.28 tolerated(0.11) benign(0.365) TCGA-85-7844-01 6 5004252 5004252 T C RPP40 5'UTR 0.23 TCGA-85-7844-01 6 70916984 70916984 C A COL19A1 3'UTR 0.07 TCGA-85-7844-01 6 99857153 99857153 C T PNISR Missense_Mutation p.G190E 0.11 tolerated(0.14) probably_damaging(0.998) TCGA-85-7844-01 7 101200861 101200861 G A COL26A1 3'UTR 0.25 TCGA-85-7844-01 7 11091305 11091305 A G PHF14 Silent p.L793L 0.27 TCGA-85-7844-01 7 127724809 127724809 G C SND1 Missense_Mutation p.R715P 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-85-7844-01 7 129855904 129855904 C G SSMEM1 Missense_Mutation p.T110S 0.13 tolerated(0.78) possibly_damaging(0.486) TCGA-85-7844-01 7 142498972 142498972 G C TRBC2 Silent p.S83S 0.08 TCGA-85-7844-01 7 2302987 2302987 A T SNX8 Missense_Mutation p.S265T 0.28 tolerated(0.06) possibly_damaging(0.861) TCGA-85-7844-01 7 29963686 29963686 G C SCRN1 Missense_Mutation p.Q398E 0.14 tolerated(0.7) possibly_damaging(0.63) TCGA-85-7844-01 7 37954045 37954045 C G SFRP4 Missense_Mutation p.W152C 0.25 deleterious(0.02) benign(0.319) TCGA-85-7844-01 7 38948782 38948782 C A VPS41 5'UTR 0.21 TCGA-85-7844-01 7 55224245 55224245 T C EGFR Silent p.I342I 0.20 TCGA-85-7844-01 7 55863560 55863560 G C SEPT14 3'UTR 0.19 TCGA-85-7844-01 7 64363679 64363679 C G ZNF273 5'UTR 0.17 TCGA-85-7844-01 7 71135078 71135078 C A WBSCR17 Missense_Mutation p.T463N 0.11 deleterious(0.01) probably_damaging(0.94) TCGA-85-7844-01 7 72848774 72848774 A G FZD9 Missense_Mutation p.N146S 0.30 tolerated(0.09) possibly_damaging(0.645) TCGA-85-7844-01 7 76058894 76058894 C T ZP3 Silent p.N125N 0.14 TCGA-85-7844-01 7 91630389 91630389 A G AKAP9 Silent p.K386K 0.33 TCGA-85-7844-01 8 125326145 125326145 A T TMEM65 3'UTR 0.21 TCGA-85-7844-01 8 134266839 134266839 C A NDRG1 Splice_Site p.X180_splice 0.19 TCGA-85-7844-01 8 142231676 142231676 C T SLC45A4 Missense_Mutation p.G93S 0.19 tolerated(0.07) benign(0.019) TCGA-85-7844-01 8 143623516 143623535 GACCCTCAAGAGGGACAAGG - BAI1 Frame_Shift_Del p.T1308Afs*8 0.20 TCGA-85-7844-01 8 145741168 145741168 G T RECQL4 Missense_Mutation p.A413E 0.31 deleterious(0.02) benign(0.251) TCGA-85-7844-01 8 20004847 20004847 G T SLC18A1 Silent p.V462V 0.18 TCGA-85-7844-01 8 38133243 38133243 G A WHSC1L1 Silent p.P1410P 0.22 TCGA-85-7844-01 8 41790604 41790604 T A KAT6A Missense_Mutation p.T1712S 0.05 unknown(0) TCGA-85-7844-01 8 77767724 77767724 C - ZFHX4 Frame_Shift_Del p.T2857Rfs*48 0.26 TCGA-85-7844-01 9 125391756 125391756 G A OR1B1 Missense_Mutation p.S20L 0.10 deleterious(0.03) benign(0.119) TCGA-85-7844-01 9 131115461 131115461 A T SLC27A4 Missense_Mutation p.E382V 0.13 deleterious(0) possibly_damaging(0.848) TCGA-85-7844-01 9 137777144 137777144 A G FCN2 Missense_Mutation p.I121V 0.21 tolerated(0.22) benign(0.151) TCGA-85-7844-01 9 140137264 140137264 G A TUBB4B Silent p.E198E 0.24 TCGA-85-7844-01 9 16552646 16552646 A G BNC2 Missense_Mutation p.V184A 0.31 deleterious(0) possibly_damaging(0.836) TCGA-85-7844-01 9 22029476 22029476 G C CDKN2B-AS1 RNA 0.28 TCGA-85-7844-01 9 98211465 98211465 T G PTCH1 Silent p.T1230T 0.19 TCGA-85-7844-01 X 125298694 125298694 G T DCAF12L2 Missense_Mutation p.A405D 0.38 tolerated(0.08) benign(0.001) TCGA-85-7844-01 X 135570654 135570654 G T BRS3 Silent p.R127R 0.42 TCGA-85-7844-01 X 153660662 153660662 G T ATP6AP1 Missense_Mutation p.W138C 0.57 tolerated(0.11) probably_damaging(0.995) TCGA-85-7844-01 X 21670423 21670423 G T CNKSR2 Splice_Site p.X964_splice 0.45 TCGA-85-7844-01 X 22245649 22245649 G T PHEX Missense_Mutation p.R664I 0.56 deleterious(0.03) benign(0.048) TCGA-85-7844-01 X 48419111 48419111 G T TBC1D25 Silent p.L605L 0.32 TCGA-85-7844-01 X 49161886 49161886 G C GAGE10 Missense_Mutation p.E29Q 0.53 tolerated(0.91) possibly_damaging(0.753) TCGA-85-7844-01 X 57367818 57367818 C T FAAH2 Missense_Mutation p.S246F 0.43 deleterious(0) probably_damaging(0.995) TCGA-85-7844-01 X 78010860 78010860 T C LPAR4 Missense_Mutation p.L165P 0.49 deleterious(0.01) possibly_damaging(0.905) TCGA-85-7950-01 10 102778591 102778591 G T PDZD7 Missense_Mutation p.L438M 0.33 deleterious(0.01) probably_damaging(0.954) TCGA-85-7950-01 10 121652433 121652433 C T SEC23IP Missense_Mutation p.P47S 0.55 tolerated_low_confidence(0.26) benign(0.002) TCGA-85-7950-01 10 25887316 25887316 C G GPR158 Missense_Mutation p.Q921E 0.31 tolerated(0.09) benign(0.04) TCGA-85-7950-01 10 43604573 43604573 G T RET Silent p.A386A 0.55 TCGA-85-7950-01 10 5682698 5682698 G A ASB13 Missense_Mutation p.P269S 0.47 tolerated(0.27) benign(0.007) TCGA-85-7950-01 10 61444063 61444063 C T SLC16A9 5'UTR 0.40 TCGA-85-7950-01 10 81051951 81051951 C T ZMIZ1 Silent p.G265G 0.43 TCGA-85-7950-01 10 89692971 89692971 T - PTEN Frame_Shift_Del p.L152Qfs*7 0.37 TCGA-85-7950-01 11 113286305 113286305 C A DRD2 Silent p.P187P 0.36 TCGA-85-7950-01 11 116692300 116692300 G T APOA4 Silent p.T158T 0.31 TCGA-85-7950-01 11 118984616 118984616 G A C2CD2L Missense_Mutation p.R515H 0.37 deleterious(0) probably_damaging(1) TCGA-85-7950-01 11 119156032 119156032 C A CBL Missense_Mutation p.P566H 0.33 deleterious_low_confidence(0.03) probably_damaging(0.994) TCGA-85-7950-01 11 124740926 124740926 G T ROBO3 Silent p.V350V 0.24 TCGA-85-7950-01 11 124756522 124756522 C G ROBO4 Missense_Mutation p.G878R 0.33 deleterious(0) probably_damaging(0.953) TCGA-85-7950-01 11 128564063 128564063 C A FLI1 5'UTR 0.55 TCGA-85-7950-01 11 130784978 130784978 G A SNX19 Missense_Mutation p.S286L 0.26 tolerated(0.25) benign(0.003) TCGA-85-7950-01 11 17414576 17414576 C A ABCC8 Missense_Mutation p.D1570Y 0.44 deleterious(0) possibly_damaging(0.702) TCGA-85-7950-01 11 17414577 17414577 C A ABCC8 Missense_Mutation p.K1569N 0.44 deleterious(0) benign(0.006) TCGA-85-7950-01 11 17531098 17531098 A G USH1C Silent p.P606P 0.38 TCGA-85-7950-01 11 17531122 17531122 G T USH1C Silent p.R598R 0.38 TCGA-85-7950-01 11 36680722 36680722 A C C11orf74 Missense_Mutation p.K218Q 0.50 tolerated(0.07) benign(0.002) TCGA-85-7950-01 11 5254127 5254127 C A HBD 3'UTR 0.56 TCGA-85-7950-01 11 55541618 55541618 G A OR5D13 Silent p.G235G 0.38 TCGA-85-7950-01 11 55927097 55927097 C T OR8K5 Missense_Mutation p.G233S 0.28 deleterious_low_confidence(0.04) benign(0.15) TCGA-85-7950-01 11 56128197 56128197 G A OR8J1 Missense_Mutation p.V159I 0.33 tolerated(0.48) benign(0.068) TCGA-85-7950-01 11 56309891 56309891 A G OR5M11 Silent p.S281S 0.15 TCGA-85-7950-01 11 57996326 57996326 A T OR10Q1 Missense_Mutation p.F8I 0.31 tolerated_low_confidence(0.08) benign(0.002) TCGA-85-7950-01 11 60234429 60234429 C G MS4A1 Intron 0.24 TCGA-85-7950-01 11 62297431 62297431 G A AHNAK Silent p.D1486D 0.27 TCGA-85-7950-01 11 62933633 62933633 G A SLC22A25 Missense_Mutation p.L390F 0.25 tolerated(0.39) benign(0.101) TCGA-85-7950-01 11 65123891 65123891 G T TIGD3 Missense_Mutation p.R204S 0.26 tolerated(0.55) benign(0.005) TCGA-85-7950-01 11 6977045 6977045 A G ZNF215 Silent p.K279K 0.58 TCGA-85-7950-01 11 8736204 8736204 C G ST5 Missense_Mutation p.R632T 0.36 deleterious(0) benign(0.216) TCGA-85-7950-01 11 92532261 92532261 A G FAT3 Missense_Mutation p.I2028V 0.27 probably_damaging(0.999) TCGA-85-7950-01 11 972164 972164 A G AP2A2 Missense_Mutation p.M128V 0.60 tolerated(1) benign(0.007) TCGA-85-7950-01 12 100166868 100166868 T A ANKS1B Splice_Site p.X321_splice 0.38 TCGA-85-7950-01 12 100717378 100717378 A G SCYL2 Missense_Mutation p.R491G 0.27 deleterious(0) possibly_damaging(0.797) TCGA-85-7950-01 12 100787220 100787220 G T SLC17A8 Nonsense_Mutation p.G183* 0.28 TCGA-85-7950-01 12 100787221 100787221 G T SLC17A8 Missense_Mutation p.G183V 0.29 tolerated(0.14) probably_damaging(0.981) TCGA-85-7950-01 12 107048065 107048065 T C RFX4 Missense_Mutation p.M93T 0.35 tolerated(0.44) benign(0.443) TCGA-85-7950-01 12 108091315 108091315 G A PWP1 Missense_Mutation p.E229K 0.35 deleterious(0) possibly_damaging(0.816) TCGA-85-7950-01 12 108962638 108962638 G T ISCU Silent p.L150L 0.40 TCGA-85-7950-01 12 109924377 109924377 C T UBE3B Silent p.L148L 0.29 TCGA-85-7950-01 12 113553747 113553747 G T RASAL1 Missense_Mutation p.P281T 0.33 deleterious(0.02) possibly_damaging(0.877) TCGA-85-7950-01 12 123687825 123687825 G C MPHOSPH9 Missense_Mutation p.S279C 0.34 deleterious(0.05) benign(0.046) TCGA-85-7950-01 12 12483517 12483517 A G MANSC1 Missense_Mutation p.L247P 0.34 tolerated(0.15) benign(0.004) TCGA-85-7950-01 12 2721167 2721167 C A CACNA1C Silent p.A1292A 0.44 TCGA-85-7950-01 12 29709864 29709864 C A TMTC1 Missense_Mutation p.K534N 0.29 deleterious(0.02) possibly_damaging(0.497) TCGA-85-7950-01 12 39724060 39724060 T C KIF21A Silent p.L1108L 0.41 TCGA-85-7950-01 12 55641418 55641418 T A OR6C74 Missense_Mutation p.M116K 0.29 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-85-7950-01 12 58121331 58121331 G C AGAP2-AS1 Missense_Mutation p.E186Q 0.41 possibly_damaging(0.607) TCGA-85-7950-01 12 68552010 68552010 A T IFNG Missense_Mutation p.N48K 0.30 tolerated(0.11) benign(0.015) TCGA-85-7950-01 12 6883868 6883868 G A LAG3 Missense_Mutation p.G207S 0.36 tolerated(0.12) possibly_damaging(0.883) TCGA-85-7950-01 12 75434896 75434896 A T KCNC2 3'UTR 0.42 TCGA-85-7950-01 12 7649421 7649421 C A CD163 Missense_Mutation p.V363L 0.32 deleterious(0) probably_damaging(0.944) TCGA-85-7950-01 12 78400251 78400251 T A NAV3 Silent p.P311P 0.33 TCGA-85-7950-01 12 86373265 86373265 A T MGAT4C Silent p.V413V 0.21 TCGA-85-7950-01 12 936469 936469 A T WNK1 Intron 0.52 TCGA-85-7950-01 12 96371774 96371774 C A HAL Missense_Mutation p.M534I 0.32 deleterious(0) probably_damaging(1) TCGA-85-7950-01 12 99145133 99145133 C T ANKS1B Silent p.V1224V 0.29 TCGA-85-7950-01 12 99548174 99548174 C A ANKS1B Splice_Site p.X807_splice 0.37 TCGA-85-7950-01 13 109475613 109475613 C A MYO16 Missense_Mutation p.L340M 0.31 tolerated(0.14) possibly_damaging(0.643) TCGA-85-7950-01 13 53608520 53608520 G T OLFM4 Missense_Mutation p.G81V 0.45 deleterious(0) probably_damaging(0.996) TCGA-85-7950-01 14 20444068 20444068 T C OR4K15 Missense_Mutation p.F131L 0.57 tolerated(0.25) benign(0.029) TCGA-85-7950-01 14 20444643 20444643 G C OR4K15 Missense_Mutation p.M322I 0.32 tolerated(0.17) benign(0.02) TCGA-85-7950-01 14 20852551 20852551 T C TEP1 Missense_Mutation p.Q1113R 0.52 deleterious(0) benign(0.33) TCGA-85-7950-01 14 21464391 21464391 C T METTL17 Silent p.P340P 0.44 TCGA-85-7950-01 14 21498804 21498804 G T TPPP2 Missense_Mutation p.G22C 0.29 deleterious(0) probably_damaging(0.999) TCGA-85-7950-01 14 31852940 31852940 A G HEATR5A Silent p.P168P 0.37 TCGA-85-7950-01 14 35761644 35761644 G A PSMA6 5'UTR 0.58 TCGA-85-7950-01 14 53217432 53217432 A G STYX Missense_Mutation p.H59R 0.56 deleterious(0) probably_damaging(0.997) TCGA-85-7950-01 14 53513661 53513661 A G DDHD1 Missense_Mutation p.L843S 0.44 deleterious(0) probably_damaging(0.998) TCGA-85-7950-01 14 64447880 64447880 G C SYNE2 Missense_Mutation p.E609Q 0.50 benign(0.004) TCGA-85-7950-01 14 75248578 75248578 C G YLPM1 Missense_Mutation p.S611C 0.49 unknown(0) TCGA-85-7950-01 15 40580882 40580882 C A PLCB2 3'UTR 0.86 TCGA-85-7950-01 15 40915964 40915964 G A CASC5 Missense_Mutation p.D1194N 0.25 tolerated(0.05) benign(0.001) TCGA-85-7950-01 15 43621468 43621468 C G LCMT2 Missense_Mutation p.S407T 0.64 tolerated(0.55) benign(0.004) TCGA-85-7950-01 15 74635331 74635331 C A CYP11A1 Missense_Mutation p.G326V 0.66 deleterious(0) probably_damaging(0.998) TCGA-85-7950-01 15 79184630 79184630 G A MORF4L1 Nonsense_Mutation p.W211* 0.25 TCGA-85-7950-01 16 15832522 15832522 C T MYH11 Silent p.R1014R 0.44 TCGA-85-7950-01 16 46705752 46705752 C T VPS35 Silent p.L463L 0.65 TCGA-85-7950-01 16 70989415 70989415 T C HYDIN Missense_Mutation p.Y2060C 0.24 probably_damaging(0.993) TCGA-85-7950-01 16 88951665 88951665 G A CBFA2T3 Silent p.N302N 0.40 TCGA-85-7950-01 16 89922540 89922540 G A SPIRE2 Missense_Mutation p.R333H 0.70 deleterious(0.01) probably_damaging(0.944) TCGA-85-7950-01 17 10312764 10312764 C T MYH8 Missense_Mutation p.E577K 0.32 deleterious(0) possibly_damaging(0.655) TCGA-85-7950-01 17 10318810 10318812 CTT - MYH8 In_Frame_Del p.K209del 0.20 TCGA-85-7950-01 17 18566216 18566216 C G ZNF286B Missense_Mutation p.Q201H 0.45 tolerated(0.22) possibly_damaging(0.553) TCGA-85-7950-01 17 26962587 26962587 G - KIAA0100 Frame_Shift_Del p.P673Qfs*20 0.35 TCGA-85-7950-01 17 39079310 39079310 G A KRT23 Silent p.A400A 0.44 TCGA-85-7950-01 17 4455859 4455859 T C MYBBP1A Missense_Mutation p.I208M 0.64 deleterious(0.05) benign(0.038) TCGA-85-7950-01 17 65050168 65050168 G A CACNG1 Missense_Mutation p.E96K 0.52 tolerated(0.1) benign(0.251) TCGA-85-7950-01 17 7010447 7010447 C A ASGR2 Missense_Mutation p.V179F 0.61 deleterious(0) possibly_damaging(0.891) TCGA-85-7950-01 17 72436561 72436561 G A GPRC5C Missense_Mutation p.V261I 0.40 deleterious(0.03) probably_damaging(0.949) TCGA-85-7950-01 17 72578364 72578364 G - CD300LD Frame_Shift_Del p.L156Sfs*23 0.35 TCGA-85-7950-01 17 7578266 7578266 T A TP53 Missense_Mutation p.I195F 0.69 deleterious(0) probably_damaging(1) TCGA-85-7950-01 18 45556132 45556140 GCAGAACTC - ZBTB7C In_Frame_Del p.E451_C453del 0.15 TCGA-85-7950-01 18 48255537 48255537 G C MAPK4 Silent p.V359V 0.31 TCGA-85-7950-01 18 65181594 65181594 C A DSEL Missense_Mutation p.L94F 0.32 tolerated(0.06) benign(0.348) TCGA-85-7950-01 18 67860683 67860683 A C RTTN Missense_Mutation p.V283G 0.30 deleterious(0) benign(0.075) TCGA-85-7950-01 19 11537755 11537755 G A CCDC151 Nonsense_Mutation p.Q184* 0.07 TCGA-85-7950-01 19 11979188 11979188 A G ZNF439 Missense_Mutation p.E435G 0.38 deleterious(0) probably_damaging(0.998) TCGA-85-7950-01 19 13397460 13397460 G T CACNA1A Missense_Mutation p.P1137H 0.42 probably_damaging(0.979) TCGA-85-7950-01 19 14707784 14707784 T A CLEC17A Missense_Mutation p.L181Q 0.29 deleterious(0) probably_damaging(0.992) TCGA-85-7950-01 19 16060604 16060604 A - OR10H4 Frame_Shift_Del p.K263Sfs*13 0.18 TCGA-85-7950-01 19 19609380 19609380 G T GATAD2A Silent p.A351A 0.42 TCGA-85-7950-01 19 2097318 2097318 G A IZUMO4 Silent p.K95K 0.28 TCGA-85-7950-01 19 37904796 37904796 G A ZNF569 Missense_Mutation p.S255L 0.50 deleterious(0.01) probably_damaging(0.989) TCGA-85-7950-01 19 41892571 41892571 C G EXOSC5 Silent p.R225R 0.31 TCGA-85-7950-01 19 46347409 46347409 G A SYMPK Silent p.F242F 0.48 TCGA-85-7950-01 19 51022195 51022195 A T LRRC4B Missense_Mutation p.W259R 0.58 deleterious(0.04) possibly_damaging(0.586) TCGA-85-7950-01 19 5111503 5111503 C T KDM4B Intron 0.48 TCGA-85-7950-01 19 55021748 55021748 G A LAIR2 Missense_Mutation p.G143D 0.13 tolerated(0.36) benign(0.206) TCGA-85-7950-01 19 55897982 55897982 A T RPL28 Silent p.G42G 0.34 TCGA-85-7950-01 19 56164118 56164118 C T CCDC106 3'UTR 0.43 TCGA-85-7950-01 19 56244388 56244388 G A NLRP9 Missense_Mutation p.S270F 0.19 deleterious(0) probably_damaging(0.998) TCGA-85-7950-01 19 56369730 56369730 C A NLRP4 Missense_Mutation p.A324D 0.27 deleterious(0) probably_damaging(0.996) TCGA-85-7950-01 19 9063291 9063291 G A MUC16 Missense_Mutation p.P8052L 0.43 unknown(0) TCGA-85-7950-01 19 9801291 9801291 T C ZNF812 Silent p.V296V 0.29 TCGA-85-7950-01 1 101188783 101188783 C T VCAM1 Missense_Mutation p.T183I 0.51 tolerated(0.26) benign(0.14) TCGA-85-7950-01 1 11346236 11346236 A G UBIAD1 3'UTR 0.63 TCGA-85-7950-01 1 114442374 114442374 C A AP4B1 Intron 0.50 TCGA-85-7950-01 1 12921166 12921166 C T PRAMEF2 Silent p.L319L 0.06 TCGA-85-7950-01 1 150769323 150769323 C A CTSK Missense_Mutation p.K314N 0.34 tolerated(0.1) possibly_damaging(0.558) TCGA-85-7950-01 1 150786701 150786701 C A ARNT Missense_Mutation p.Q655H 0.45 deleterious_low_confidence(0.04) possibly_damaging(0.526) TCGA-85-7950-01 1 150997989 150997989 A G PRUNE Splice_Site p.X174_splice 0.23 TCGA-85-7950-01 1 152079807 152079807 C G TCHH 3'UTR 0.23 TCGA-85-7950-01 1 155289744 155289744 C G FDPS Intron 0.50 TCGA-85-7950-01 1 156354353 156354353 C A RHBG Missense_Mutation p.P424T 0.33 deleterious(0) possibly_damaging(0.725) TCGA-85-7950-01 1 157667164 157667164 C G FCRL3 Missense_Mutation p.G204R 0.39 deleterious(0) probably_damaging(0.999) TCGA-85-7950-01 1 158517005 158517005 C G OR6Y1 Silent p.L297L 0.32 TCGA-85-7950-01 1 158639212 158639212 C G SPTA1 Missense_Mutation p.D607H 0.31 deleterious(0) probably_damaging(1) TCGA-85-7950-01 1 158725360 158725360 T A OR6K6 Missense_Mutation p.I252N 0.34 deleterious(0) probably_damaging(0.993) TCGA-85-7950-01 1 162381779 162381779 G A SH2D1B Silent p.L10L 0.27 TCGA-85-7950-01 1 173735414 173735414 C G KLHL20 Silent p.L427L 0.26 TCGA-85-7950-01 1 177906448 177906448 G A SEC16B Missense_Mutation p.P802S 0.24 tolerated(0.07) possibly_damaging(0.761) TCGA-85-7950-01 1 178485808 178485808 A T TEX35 Missense_Mutation p.K92M 0.30 deleterious(0) probably_damaging(0.993) TCGA-85-7950-01 1 178489889 178489889 G T TEX35 Missense_Mutation p.K141N 0.27 tolerated_low_confidence(0.08) benign(0.118) TCGA-85-7950-01 1 196857242 196857242 T A CFHR4 5'UTR 0.34 TCGA-85-7950-01 1 202119446 202119446 G T PTPN7 Missense_Mutation p.L433I 0.22 tolerated(0.19) probably_damaging(0.997) TCGA-85-7950-01 1 214815980 214815980 A T CENPF Silent p.S1433S 0.32 TCGA-85-7950-01 1 216246499 216246499 T A USH2A Missense_Mutation p.I1906F 0.30 probably_damaging(0.943) TCGA-85-7950-01 1 216369920 216369920 T C USH2A Missense_Mutation p.Q1409R 0.44 benign(0.008) TCGA-85-7950-01 1 216420192 216420192 G T USH2A Missense_Mutation p.N848K 0.38 benign(0.232) TCGA-85-7950-01 1 221053308 221053308 G A HLX Missense_Mutation p.A37T 0.62 deleterious_low_confidence(0) benign(0.3) TCGA-85-7950-01 1 22140960 22140960 C T LDLRAD2 Missense_Mutation p.S52L 0.41 deleterious(0.02) benign(0.048) TCGA-85-7950-01 1 226835053 226835053 C A ITPKB Missense_Mutation p.R687S 0.47 deleterious(0.03) probably_damaging(0.98) TCGA-85-7950-01 1 233394821 233394821 G A PCNXL2 Nonsense_Mutation p.Q263* 0.19 TCGA-85-7950-01 1 245006540 245006540 T G COX20 3'UTR 0.37 TCGA-85-7950-01 1 246719987 246719987 C G TFB2M Missense_Mutation p.R198T 0.49 deleterious(0.02) benign(0.438) TCGA-85-7950-01 1 247463905 247463905 C A ZNF496 Missense_Mutation p.K560N 0.42 deleterious(0) probably_damaging(1) TCGA-85-7950-01 1 247875369 247875369 G T OR6F1 Missense_Mutation p.S230Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-85-7950-01 1 248366977 248366977 G T OR2M3 Missense_Mutation p.C203F 0.11 deleterious(0) probably_damaging(1) TCGA-85-7950-01 1 25880532 25880532 G A LDLRAP1 Missense_Mutation p.A70T 0.27 deleterious(0) probably_damaging(0.991) TCGA-85-7950-01 1 32145170 32145170 G A COL16A1 Intron 0.33 TCGA-85-7950-01 1 32568281 32568281 G T TMEM39B 3'UTR 0.20 TCGA-85-7950-01 1 35857909 35857909 C - ZMYM4 Frame_Shift_Del p.P896Lfs*7 0.30 TCGA-85-7950-01 1 45962242 45962242 C A CCDC163P Missense_Mutation p.V106F 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.607) TCGA-85-7950-01 1 54610184 54610184 C A CDCP2 Missense_Mutation p.D128Y 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-85-7950-01 1 57420497 57420497 C A C8B Missense_Mutation p.R132M 0.32 deleterious(0) probably_damaging(0.997) TCGA-85-7950-01 1 65119549 65119549 G T CACHD1 Missense_Mutation p.R499L 0.21 tolerated(0.11) benign(0.136) TCGA-85-7950-01 1 78163617 78163617 C A USP33 Splice_Site p.X868_splice 0.56 TCGA-85-7950-01 1 85279513 85279513 G C LPAR3 3'UTR 0.47 TCGA-85-7950-01 1 86939226 86939226 G A CLCA1 Missense_Mutation p.E97K 0.67 deleterious(0) probably_damaging(0.999) TCGA-85-7950-01 1 89523913 89523913 G C GBP1 Silent p.T212T 0.55 TCGA-85-7950-01 20 18396044 18396044 C G DZANK1 Missense_Mutation p.G335A 0.20 tolerated(0.09) benign(0.011) TCGA-85-7950-01 20 18724769 18724769 A T DTD1 Missense_Mutation p.Q168L 0.38 tolerated(0.07) benign(0.002) TCGA-85-7950-01 20 21492754 21492754 C A NKX2-2 Missense_Mutation p.R210M 0.34 deleterious(0) probably_damaging(0.986) TCGA-85-7950-01 20 24524006 24524006 C A SYNDIG1 Silent p.I91I 0.35 TCGA-85-7950-01 20 3684554 3684554 C A SIGLEC1 Missense_Mutation p.W297C 0.25 deleterious(0.02) probably_damaging(0.95) TCGA-85-7950-01 21 32119458 32119458 G T KRTAP21-2 Silent p.S21S 0.32 TCGA-85-7950-01 21 41032579 41032579 C G B3GALT5 Missense_Mutation p.F31L 0.24 tolerated(0.31) benign(0.001) TCGA-85-7950-01 22 35730428 35730428 G A TOM1 Missense_Mutation p.D379N 0.49 tolerated(0.1) benign(0.306) TCGA-85-7950-01 22 36962514 36962514 G A CACNG2 Missense_Mutation p.P108S 0.62 deleterious(0) possibly_damaging(0.676) TCGA-85-7950-01 2 100623122 100623122 G C AFF3 Missense_Mutation p.S307C 0.13 deleterious(0.03) possibly_damaging(0.621) TCGA-85-7950-01 2 113500330 113500330 C G CKAP2L Missense_Mutation p.R592P 0.16 deleterious(0) probably_damaging(0.991) TCGA-85-7950-01 2 136579714 136579714 G C LCT Intron 0.22 TCGA-85-7950-01 2 137814674 137814674 A T THSD7B Missense_Mutation p.E275V 0.32 deleterious(0.04) possibly_damaging(0.888) TCGA-85-7950-01 2 139428664 139428664 G A NXPH2 Missense_Mutation p.S208F 0.24 deleterious(0) probably_damaging(0.974) TCGA-85-7950-01 2 141625289 141625289 G T LRP1B Nonsense_Mutation p.Y1483* 0.15 TCGA-85-7950-01 2 141641387 141641387 C A LRP1B Nonsense_Mutation p.G1390* 0.22 TCGA-85-7950-01 2 145156288 145156288 T C ZEB2 Silent p.K822K 0.33 TCGA-85-7950-01 2 166535529 166535529 G T CSRNP3 Nonsense_Mutation p.E342* 0.35 TCGA-85-7950-01 2 179422768 179422768 T A TTN Nonsense_Mutation p.K29105* 0.38 TCGA-85-7950-01 2 179484463 179484463 C T TTN Missense_Mutation p.M15527I 0.20 TCGA-85-7950-01 2 179598522 179598522 A G TTN Silent p.S5198S 0.28 TCGA-85-7950-01 2 197657825 197657825 A G GTF3C3 Missense_Mutation p.M89T 0.21 deleterious_low_confidence(0) possibly_damaging(0.582) TCGA-85-7950-01 2 21001110 21001110 T C C2orf43 Silent p.Q38Q 0.43 TCGA-85-7950-01 2 215279173 215279173 G T VWC2L Missense_Mutation p.D86Y 0.24 deleterious(0.05) probably_damaging(0.998) TCGA-85-7950-01 2 219677372 219677372 C G CYP27A1 Missense_Mutation p.F248L 0.17 tolerated(0.28) benign(0.186) TCGA-85-7950-01 2 219920032 219920032 C A IHH Missense_Mutation p.G378V 0.20 tolerated(0.09) benign(0.012) TCGA-85-7950-01 2 224642535 224642535 A G AP1S3 Missense_Mutation p.W19R 0.16 deleterious(0) probably_damaging(1) TCGA-85-7950-01 2 224822160 224822160 G T MRPL44 5'UTR 0.13 TCGA-85-7950-01 2 228884763 228884763 T A SPHKAP Missense_Mutation p.E269D 0.19 tolerated(0.14) benign(0.019) TCGA-85-7950-01 2 239162166 239162166 G A PER2 Missense_Mutation p.P833L 0.18 deleterious(0.02) benign(0.113) TCGA-85-7950-01 2 239234507 239234507 T A TRAF3IP1 Missense_Mutation p.S84T 0.21 tolerated(0.85) benign(0.219) TCGA-85-7950-01 2 27799510 27799510 T A C2orf16 Missense_Mutation p.V24E 0.43 tolerated(0.53) benign(0.013) TCGA-85-7950-01 2 37455289 37455289 G A CEBPZ Silent p.V349V 0.37 TCGA-85-7950-01 2 45169823 45169823 C A SIX3 Missense_Mutation p.R194S 0.29 deleterious(0) probably_damaging(0.993) TCGA-85-7950-01 2 61315342 61315342 G C KIAA1841 Missense_Mutation p.L313F 0.42 tolerated(0.06) benign(0.002) TCGA-85-7950-01 2 64780187 64780187 A G AFTPH Missense_Mutation p.K527E 0.18 tolerated(0.97) benign(0.005) TCGA-85-7950-01 2 88327562 88327562 T C KRCC1 Missense_Mutation p.E174G 0.30 tolerated(0.06) benign(0.03) TCGA-85-7950-01 2 88408013 88408013 C G SMYD1 Silent p.L423L 0.14 TCGA-85-7950-01 2 89442161 89442161 T C IGKV3-20 Missense_Mutation p.R82G 0.18 deleterious(0) possibly_damaging(0.477) TCGA-85-7950-01 2 90154160 90154160 A T IGKV3D-15 Missense_Mutation p.S83C 0.23 deleterious(0) probably_damaging(0.98) TCGA-85-7950-01 3 109050834 109050834 G T DPPA4 Missense_Mutation p.P75T 0.22 tolerated(0.44) benign(0.423) TCGA-85-7950-01 3 121976139 121976139 G C CASR Missense_Mutation p.E133Q 0.21 tolerated(0.43) benign(0.006) TCGA-85-7950-01 3 122632045 122632045 C A SEMA5B Splice_Site p.X890_splice 0.40 TCGA-85-7950-01 3 122632046 122632046 C T SEMA5B Missense_Mutation p.A890T 0.40 tolerated(0.16) benign(0.01) TCGA-85-7950-01 3 122646806 122646806 G T SEMA5B Silent p.A281A 0.56 TCGA-85-7950-01 3 133647337 133647337 G T C3orf36 Missense_Mutation p.P104Q 0.61 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-85-7950-01 3 134851698 134851698 G T EPHB1 Silent p.R368R 0.19 TCGA-85-7950-01 3 139077840 139077840 C T COPB2 Silent p.T828T 0.24 TCGA-85-7950-01 3 147128338 147128338 C A ZIC1 Missense_Mutation p.H147N 0.29 deleterious(0) possibly_damaging(0.873) TCGA-85-7950-01 3 155838426 155838426 C A KCNAB1 Missense_Mutation p.A9E 0.23 deleterious_low_confidence(0.02) benign(0.129) TCGA-85-7950-01 3 179051095 179051095 G C ZNF639 Missense_Mutation p.D115H 0.27 deleterious(0.04) benign(0.387) TCGA-85-7950-01 3 184587268 184587268 A G VPS8 Splice_Site p.X533_splice 0.19 TCGA-85-7950-01 3 186953993 186953993 G A MASP1 Silent p.L556L 0.21 TCGA-85-7950-01 3 3095642 3095642 G C CNTN4 Missense_Mutation p.R988P 0.42 deleterious(0) unknown(0) TCGA-85-7950-01 3 407754 407754 T A CHL1 Missense_Mutation p.S569R 0.58 tolerated(1) benign(0.003) TCGA-85-7950-01 3 47752263 47752263 G C SMARCC1 Missense_Mutation p.F276L 0.53 deleterious(0) possibly_damaging(0.49) TCGA-85-7950-01 3 49764575 49764575 T C IP6K1 Missense_Mutation p.M436V 0.60 deleterious(0.01) benign(0.003) TCGA-85-7950-01 3 99514102 99514102 G T COL8A1 Missense_Mutation p.G453C 0.12 deleterious(0) unknown(0) TCGA-85-7950-01 3 99998492 99998492 G T TBC1D23 Splice_Site p.X18_splice 0.16 TCGA-85-7950-01 4 111430919 111430919 C T ENPEP Nonsense_Mutation p.Q384* 0.25 TCGA-85-7950-01 4 114277322 114277322 T C ANK2 Silent p.S2516S 0.30 TCGA-85-7950-01 4 128949794 128949794 C T C4orf29 Silent p.V288V 0.39 TCGA-85-7950-01 4 155241794 155241794 G C DCHS2 Missense_Mutation p.T1131R 0.44 deleterious(0.03) probably_damaging(0.945) TCGA-85-7950-01 4 166232716 166232716 A C KLHL2 Silent p.G450G 0.18 TCGA-85-7950-01 4 170359298 170359298 T A NEK1 Silent p.T900T 0.30 TCGA-85-7950-01 4 170671761 170671761 A C C4orf27 Missense_Mutation p.F108L 0.41 deleterious(0.01) possibly_damaging(0.904) TCGA-85-7950-01 4 174090096 174090096 C T GALNT7 Missense_Mutation p.P37L 0.17 tolerated_low_confidence(0.3) benign(0.002) TCGA-85-7950-01 4 177605115 177605115 C A VEGFC Missense_Mutation p.V409F 0.19 tolerated(0.09) probably_damaging(0.999) TCGA-85-7950-01 4 183651378 183651378 G C TENM3 Missense_Mutation p.V871L 0.35 deleterious(0.02) benign(0.417) TCGA-85-7950-01 4 183714528 183714528 C G TENM3 Missense_Mutation p.R2235G 0.24 deleterious(0.02) possibly_damaging(0.726) TCGA-85-7950-01 4 186296847 186296847 C T LRP2BP Missense_Mutation p.E84K 0.19 tolerated(1) benign(0.01) TCGA-85-7950-01 4 186425630 186425630 C G PDLIM3 Missense_Mutation p.V302L 0.41 deleterious(0.03) benign(0.026) TCGA-85-7950-01 4 187629088 187629088 C T FAT1 Missense_Mutation p.D632N 0.46 benign(0.016) TCGA-85-7950-01 4 187629487 187629487 T C FAT1 Missense_Mutation p.T499A 0.19 probably_damaging(0.997) TCGA-85-7950-01 4 25030135 25030135 T A LGI2 Missense_Mutation p.Q88L 0.27 deleterious(0.04) probably_damaging(0.983) TCGA-85-7950-01 4 47605592 47605592 G A CORIN Silent p.I878I 0.36 TCGA-85-7950-01 4 57182839 57182839 C A KIAA1211 Silent p.P1057P 0.30 TCGA-85-7950-01 4 59368 59368 G T ZNF595 Nonsense_Mutation p.E17* 0.09 TCGA-85-7950-01 4 62812764 62812769 CGGCAG - LPHN3 In_Frame_Del p.A784_A785del 0.20 TCGA-85-7950-01 4 6374382 6374382 G A PPP2R2C Missense_Mutation p.R165W 0.15 deleterious(0) probably_damaging(0.999) TCGA-85-7950-01 4 678307 678307 G C MFSD7 Missense_Mutation p.L269V 0.21 deleterious(0) possibly_damaging(0.771) TCGA-85-7950-01 4 76529076 76529076 C A CDKL2 Missense_Mutation p.L240F 0.19 deleterious(0.01) possibly_damaging(0.848) TCGA-85-7950-01 4 87115540 87115540 G A MAPK10 Silent p.F5F 0.38 TCGA-85-7950-01 5 10450224 10450224 G T ROPN1L Missense_Mutation p.G139V 0.36 tolerated(0.34) possibly_damaging(0.889) TCGA-85-7950-01 5 108134082 108134082 G T FER Missense_Mutation p.V67L 0.39 tolerated(0.63) probably_damaging(0.999) TCGA-85-7950-01 5 131411485 131411485 G A CSF2 Silent p.E125E 0.34 TCGA-85-7950-01 5 139747020 139747020 C A SLC4A9 Missense_Mutation p.R701S 0.25 deleterious(0) probably_damaging(0.964) TCGA-85-7950-01 5 140741378 140741378 C T PCDHGB2 Missense_Mutation p.A559V 0.29 tolerated(0.09) possibly_damaging(0.848) TCGA-85-7950-01 5 169506027 169506027 G T DOCK2 Missense_Mutation p.E1681D 0.41 tolerated(0.23) benign(0.001) TCGA-85-7950-01 5 24491824 24491824 T G CDH10 Silent p.T579T 0.36 TCGA-85-7950-01 5 33577068 33577068 G C ADAMTS12 Silent p.P1021P 0.24 TCGA-85-7950-01 5 33637725 33637725 G - ADAMTS12 Frame_Shift_Del p.Y616Tfs*25 0.21 TCGA-85-7950-01 5 33937780 33937780 G T RXFP3 Missense_Mutation p.R312L 0.25 tolerated(0.67) benign(0.002) TCGA-85-7950-01 6 100841564 100841564 C A SIM1 Missense_Mutation p.V457L 0.29 tolerated_low_confidence(0.49) benign(0) TCGA-85-7950-01 6 100841565 100841565 C A SIM1 Silent p.L456L 0.30 TCGA-85-7950-01 6 107232085 107232085 C A MIR587 RNA 0.44 TCGA-85-7950-01 6 1390787 1390787 C A FOXF2 Missense_Mutation p.A202E 0.58 deleterious(0) possibly_damaging(0.714) TCGA-85-7950-01 6 152792873 152792873 C G SYNE1 Missense_Mutation p.E497D 0.22 benign(0.021) TCGA-85-7950-01 6 153042989 153042989 C T MYCT1 Silent p.I103I 0.33 TCGA-85-7950-01 6 159461760 159461760 C T TAGAP Silent p.L194L 0.19 TCGA-85-7950-01 6 159687217 159687217 G T FNDC1 Missense_Mutation p.V1796L 0.14 deleterious(0) probably_damaging(0.998) TCGA-85-7950-01 6 166844033 166844033 G T RPS6KA2 Missense_Mutation p.R505S 0.26 deleterious(0) probably_damaging(0.953) TCGA-85-7950-01 6 169632239 169632239 C T THBS2 Missense_Mutation p.A663T 0.30 deleterious(0) probably_damaging(0.95) TCGA-85-7950-01 6 22569831 22569831 C G HDGFL1 Nonsense_Mutation p.Y9* 0.45 TCGA-85-7950-01 6 27215674 27215674 G C PRSS16 Missense_Mutation p.R28S 0.71 tolerated(0.07) benign(0.186) TCGA-85-7950-01 6 29455443 29455443 G C MAS1L Silent p.A79A 0.32 TCGA-85-7950-01 6 32035476 32035476 C A TNXB Missense_Mutation p.G2169V 0.39 probably_damaging(0.999) TCGA-85-7950-01 6 41774690 41774690 C A USP49 Missense_Mutation p.R11L 0.41 deleterious(0.01) probably_damaging(0.985) TCGA-85-7950-01 6 44149035 44149035 G - CAPN11 Frame_Shift_Del p.W639* 0.29 TCGA-85-7950-01 6 64395697 64395697 G C PHF3 Missense_Mutation p.D692H 0.25 deleterious(0) probably_damaging(1) TCGA-85-7950-01 6 84291976 84291976 G T SNAP91 Missense_Mutation p.P705H 0.36 deleterious(0) probably_damaging(0.997) TCGA-85-7950-01 6 99374420 99374420 C T FBXL4 Missense_Mutation p.G149R 0.24 deleterious(0) probably_damaging(1) TCGA-85-7950-01 7 107115626 107115626 T G GPR22 Missense_Mutation p.F374C 0.11 deleterious(0) possibly_damaging(0.888) TCGA-85-7950-01 7 122338243 122338243 C T RNF133 Missense_Mutation p.E244K 0.25 deleterious(0.01) probably_damaging(0.994) TCGA-85-7950-01 7 122635676 122635676 G T TAS2R16 Missense_Mutation p.Q5K 0.21 tolerated(0.73) benign(0.031) TCGA-85-7950-01 7 128037021 128037021 T A IMPDH1 Missense_Mutation p.Q377L 0.38 deleterious(0.03) benign(0.009) TCGA-85-7950-01 7 142567573 142567573 C G EPHB6 Missense_Mutation p.P821A 0.21 tolerated(0.18) benign(0.016) TCGA-85-7950-01 7 146471377 146471377 C T CNTNAP2 Missense_Mutation p.P38S 0.33 tolerated(0.14) benign(0.028) TCGA-85-7950-01 7 152551581 152551581 T C ACTR3B Silent p.Y400Y 0.27 TCGA-85-7950-01 7 154598776 154598776 C A DPP6 Missense_Mutation p.S540R 0.21 tolerated(0.18) possibly_damaging(0.888) TCGA-85-7950-01 7 154863166 154863166 C T HTR5A Missense_Mutation p.S186F 0.15 deleterious(0.04) possibly_damaging(0.707) TCGA-85-7950-01 7 155559283 155559283 G C RBM33 Missense_Mutation p.E1103D 0.28 tolerated(0.12) unknown(0) TCGA-85-7950-01 7 19184436 19184436 C A FERD3L 3'UTR 0.32 TCGA-85-7950-01 7 22196488 22196488 G A RAPGEF5 Nonsense_Mutation p.Q373* 0.40 TCGA-85-7950-01 7 45928356 45928356 C A IGFBP1 Silent p.A35A 0.29 TCGA-85-7950-01 7 47886570 47886570 T C PKD1L1 Missense_Mutation p.Q1687R 0.33 tolerated(0.07) benign(0.119) TCGA-85-7950-01 7 49951689 49951689 G C VWC2 Missense_Mutation p.E296Q 0.31 deleterious(0.02) probably_damaging(0.921) TCGA-85-7950-01 7 55210007 55210007 G A EGFR Silent p.T39T 0.31 TCGA-85-7950-01 7 57194345 57194345 T A ZNF479 Missense_Mutation p.L40F 0.28 deleterious(0) probably_damaging(0.999) TCGA-85-7950-01 7 73030398 73030398 C G MLXIPL Intron 0.24 TCGA-85-7950-01 7 76141046 76141046 A T UPK3B Missense_Mutation p.H158L 0.11 deleterious_low_confidence(0.02) benign(0.397) TCGA-85-7950-01 7 88965611 88965611 G T ZNF804B Missense_Mutation p.M1105I 0.43 tolerated(0.08) benign(0.01) TCGA-85-7950-01 7 92844813 92844813 T A HEPACAM2 Missense_Mutation p.I206F 0.32 deleterious(0) probably_damaging(0.997) TCGA-85-7950-01 7 943871 943871 C T ADAP1 Silent p.L180L 0.31 TCGA-85-7950-01 7 94993319 94993319 T C PON3 Missense_Mutation p.Y184C 0.33 deleterious(0.01) probably_damaging(1) TCGA-85-7950-01 7 99769733 99769733 T G GPC2 Missense_Mutation p.N334H 0.34 deleterious(0.02) benign(0.395) TCGA-85-7950-01 8 101733757 101733757 G A PABPC1 Missense_Mutation p.H19Y 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-85-7950-01 8 105503521 105503521 C A LRP12 Missense_Mutation p.D654Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-85-7950-01 8 113237131 113237131 A T CSMD3 Missense_Mutation p.C3665S 0.25 deleterious(0.02) benign(0.23) TCGA-85-7950-01 8 128428800 128428800 G A POU5F1B Missense_Mutation p.R230Q 0.40 tolerated(0.08) benign(0.021) TCGA-85-7950-01 8 143994804 143994804 G T CYP11B2 Missense_Mutation p.L340M 0.33 deleterious(0.01) probably_damaging(0.983) TCGA-85-7950-01 8 144947391 144947391 C A EPPK1 Missense_Mutation p.V11F 0.33 benign(0.357) TCGA-85-7950-01 8 145619203 145619203 C T CPSF1 Missense_Mutation p.V1304M 0.24 tolerated(0.05) possibly_damaging(0.833) TCGA-85-7950-01 8 22212932 22212932 T C PIWIL2 Missense_Mutation p.Y946H 0.48 deleterious(0) probably_damaging(1) TCGA-85-7950-01 8 24810320 24810320 G C CTD-2168K21.2 5'Flank 0.51 TCGA-85-7950-01 8 27321283 27321283 C A CHRNA2 Missense_Mutation p.W226L 0.42 deleterious(0) probably_damaging(1) TCGA-85-7950-01 8 29003957 29003957 T C KIF13B Missense_Mutation p.K709E 0.38 deleterious(0) probably_damaging(0.967) TCGA-85-7950-01 8 3432561 3432561 C A CSMD1 Missense_Mutation p.G417V 0.44 probably_damaging(1) TCGA-85-7950-01 8 3432562 3432562 C G CSMD1 Missense_Mutation p.G417R 0.43 probably_damaging(1) TCGA-85-7950-01 8 41790106 41790106 T A KAT6A Missense_Mutation p.S1878C 0.91 unknown(0) TCGA-85-7950-01 8 42196536 42196536 C T POLB Missense_Mutation p.A23V 0.04 deleterious(0) probably_damaging(0.978) TCGA-85-7950-01 8 43147758 43147758 G T POTEA RNA 0.88 TCGA-85-7950-01 8 55371642 55371642 T A SOX17 Missense_Mutation p.L111Q 0.44 deleterious(0.01) probably_damaging(0.996) TCGA-85-7950-01 8 61761085 61761085 G A CHD7 Missense_Mutation p.R1741H 0.30 probably_damaging(0.927) TCGA-85-7950-01 8 67578490 67578490 C A VCPIP1 Missense_Mutation p.W235L 0.43 deleterious(0.02) probably_damaging(1) TCGA-85-7950-01 8 72945991 72945991 C A TRPA1 Missense_Mutation p.R919L 0.27 tolerated(0.15) possibly_damaging(0.676) TCGA-85-7950-01 8 77617800 77617800 G C ZFHX4 Missense_Mutation p.D493H 0.39 probably_damaging(0.963) TCGA-85-7950-01 8 77618596 77618596 C T ZFHX4 Missense_Mutation p.P758L 0.37 possibly_damaging(0.859) TCGA-85-7950-01 9 112166732 112166732 A C PTPN3 Missense_Mutation p.F650C 0.64 deleterious(0) probably_damaging(0.975) TCGA-85-7950-01 9 134350478 134350478 G A PRRC2B Missense_Mutation p.D988N 0.19 tolerated(0.28) benign(0.003) TCGA-85-7950-01 9 135906337 135906337 G - GTF3C5 5'Flank 0.50 TCGA-85-7950-01 9 138588583 138588583 G T SOHLH1 Missense_Mutation p.P179H 0.60 tolerated_low_confidence(0.59) probably_damaging(0.979) TCGA-85-7950-01 9 74865774 74865774 A G GDA 3'Flank 0.69 TCGA-85-7950-01 X 100911525 100911525 T C ARMCX2 Silent p.S350S 0.57 TCGA-85-7950-01 X 104465033 104465033 C A TEX13A Missense_Mutation p.V17L 0.68 deleterious(0) possibly_damaging(0.597) TCGA-85-7950-01 X 13336996 13336996 C A ATXN3L Missense_Mutation p.G353V 0.60 deleterious_low_confidence(0.02) possibly_damaging(0.703) TCGA-85-7950-01 X 13785307 13785307 G A OFD1 Silent p.V887V 0.70 TCGA-85-7950-01 X 13786218 13786218 G C OFD1 Missense_Mutation p.E935Q 0.70 tolerated(0.05) benign(0.001) TCGA-85-7950-01 X 27998422 27998422 G T DCAF8L1 Missense_Mutation p.P344T 0.54 deleterious(0) probably_damaging(0.994) TCGA-85-7950-01 X 3228287 3228287 C G MXRA5 Missense_Mutation p.E2653Q 0.61 deleterious(0.03) probably_damaging(0.91) TCGA-85-7950-01 X 35993460 35993460 C A CXorf22 Silent p.P817P 0.68 TCGA-85-7950-01 X 48557307 48557307 T G SUV39H1 Missense_Mutation p.C12G 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.792) TCGA-85-7950-01 X 49084505 49084505 G T CACNA1F Missense_Mutation p.L371M 0.56 deleterious(0) probably_damaging(1) TCGA-85-7950-01 X 50119801 50119801 G T DGKK RNA 0.67 TCGA-85-7950-01 X 83723896 83723896 C A HDX Nonsense_Mutation p.G279* 0.69 TCGA-85-8048-01 10 105207126 105207126 C T CALHM2 Missense_Mutation p.G252D 0.06 deleterious(0) probably_damaging(1) TCGA-85-8048-01 10 118383570 118383570 G A PNLIPRP2 Missense_Mutation p.R55H 0.16 tolerated(0.18) benign(0.014) TCGA-85-8048-01 10 125514187 125514187 A G CPXM2 Missense_Mutation p.I670T 0.13 deleterious(0) possibly_damaging(0.527) TCGA-85-8048-01 10 25684849 25684849 A T GPR158 Missense_Mutation p.I340F 0.11 deleterious(0.02) benign(0.379) TCGA-85-8048-01 10 43127461 43127461 G C ZNF33B Missense_Mutation p.H56D 0.09 deleterious(0.03) benign(0.019) TCGA-85-8048-01 10 45499221 45499221 A G ZNF22 Silent p.G135G 0.08 TCGA-85-8048-01 11 22363327 22363327 G T SLC17A6 Splice_Site p.X113_splice 0.06 TCGA-85-8048-01 11 57077494 57077494 A G TNKS1BP1 Silent p.Y897Y 0.08 TCGA-85-8048-01 11 60230577 60230577 C G MS4A1 Missense_Mutation p.L88V 0.10 tolerated(0.34) benign(0.329) TCGA-85-8048-01 11 61553649 61553649 C A MYRF 3'UTR 0.20 TCGA-85-8048-01 11 6816139 6816139 T C OR6A2 Silent p.P267P 0.07 TCGA-85-8048-01 11 68703726 68703726 A G IGHMBP2 Missense_Mutation p.E593G 0.10 deleterious(0) probably_damaging(0.998) TCGA-85-8048-01 11 75137637 75137637 C T KLHL35 Silent p.L371L 0.13 TCGA-85-8048-01 11 76507531 76507531 C G TSKU Missense_Mutation p.L291V 0.14 tolerated(0.92) benign(0.04) TCGA-85-8048-01 11 89223674 89223674 C G NOX4 Missense_Mutation p.L35F 0.12 tolerated(0.09) benign(0.04) TCGA-85-8048-01 12 3031560 3031560 A T TULP3 Missense_Mutation p.Q129L 0.19 deleterious(0.04) possibly_damaging(0.811) TCGA-85-8048-01 12 53876969 53876969 C T MAP3K12 Missense_Mutation p.D540N 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-85-8048-01 12 55641301 55641301 C A OR6C74 Missense_Mutation p.P77H 0.07 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-85-8048-01 12 55641302 55641302 C A OR6C74 Silent p.P77P 0.07 TCGA-85-8048-01 12 56559317 56559317 G A SMARCC2 Missense_Mutation p.T975I 0.09 tolerated(0.45) unknown(0) TCGA-85-8048-01 12 7047930 7047930 G A ATN1 Missense_Mutation p.R935Q 0.16 benign(0.011) TCGA-85-8048-01 13 100637921 100637921 T C ZIC2 Silent p.N528N 0.10 TCGA-85-8048-01 13 108518519 108518519 G A FAM155A Silent p.G142G 0.13 TCGA-85-8048-01 13 113825950 113825950 C T PROZ Missense_Mutation p.T267M 0.12 tolerated(0.08) benign(0.005) TCGA-85-8048-01 13 25281182 25281182 G A ATP12A Missense_Mutation p.G737R 0.06 deleterious(0) probably_damaging(1) TCGA-85-8048-01 13 26957005 26957005 A C CDK8 Missense_Mutation p.I171L 0.10 deleterious(0) benign(0.277) TCGA-85-8048-01 13 37602282 37602282 C T SUPT20H Intron 0.13 TCGA-85-8048-01 13 98829107 98829107 G T RNF113B Silent p.L128L 0.09 TCGA-85-8048-01 14 105834479 105834479 G T PACS2 Missense_Mutation p.G219W 0.16 tolerated(0.05) probably_damaging(0.996) TCGA-85-8048-01 14 106091432 106091432 C A IGHG4 Missense_Mutation p.Q154H 0.13 deleterious(0.05) benign(0.013) TCGA-85-8048-01 14 76905970 76905970 G A ESRRB Missense_Mutation p.E92K 0.08 tolerated(0.22) benign(0.089) TCGA-85-8048-01 14 77787108 77787108 G A POMT2 5'UTR 0.27 TCGA-85-8048-01 15 22382815 22382815 C A OR4N4 Missense_Mutation p.L115I 0.10 deleterious(0) probably_damaging(0.997) TCGA-85-8048-01 15 45393421 45393421 G A DUOX2 Missense_Mutation p.T968I 0.18 tolerated(0.25) benign(0.002) TCGA-85-8048-01 15 88679155 88679155 A G NTRK3 Silent p.N294N 0.24 TCGA-85-8048-01 16 24902287 24902287 G T SLC5A11 Silent p.R254R 0.08 TCGA-85-8048-01 16 29825786 29825786 G T PRRT2 Missense_Mutation p.G338C 0.19 deleterious_low_confidence(0) unknown(0) TCGA-85-8048-01 16 31539950 31539950 G A AHSP Missense_Mutation p.A83T 0.17 tolerated(0.62) benign(0.06) TCGA-85-8048-01 16 50667588 50667588 G A NKD1 Missense_Mutation p.A437T 0.21 tolerated(0.36) benign(0.016) TCGA-85-8048-01 16 76495945 76495945 G C CNTNAP4 Missense_Mutation p.A403P 0.09 tolerated(0.49) benign(0.427) TCGA-85-8048-01 16 81249897 81249897 C A PKD1L2 Missense_Mutation p.W139L 0.10 deleterious(0) possibly_damaging(0.869) TCGA-85-8048-01 17 1538384 1538384 C T SCARF1 Missense_Mutation p.E721K 0.17 tolerated(0.11) benign(0.059) TCGA-85-8048-01 17 5044739 5044739 T A USP6 Missense_Mutation p.S506R 0.12 deleterious(0) probably_damaging(0.995) TCGA-85-8048-01 17 5308468 5308468 G T NUP88 Missense_Mutation p.P318H 0.13 tolerated(0.17) benign(0.091) TCGA-85-8048-01 17 67212042 67212042 T A ABCA10 Missense_Mutation p.T258S 0.13 tolerated(0.08) benign(0.196) TCGA-85-8048-01 17 73565401 73565401 G A LLGL2 Missense_Mutation p.G526R 0.07 deleterious(0) probably_damaging(1) TCGA-85-8048-01 17 7579414 7579414 C T TP53 Nonsense_Mutation p.W91* 0.20 TCGA-85-8048-01 18 13734529 13734529 G T RNMT Nonsense_Mutation p.E162* 0.16 TCGA-85-8048-01 18 21333689 21333689 A C LAMA3 Missense_Mutation p.Y287S 0.15 probably_damaging(0.988) TCGA-85-8048-01 18 77170652 77170652 T C NFATC1 Missense_Mutation p.L113S 0.11 tolerated(0.4) possibly_damaging(0.694) TCGA-85-8048-01 18 8376564 8376564 G A PTPRM Missense_Mutation p.R1144Q 0.10 tolerated(0.16) probably_damaging(0.965) TCGA-85-8048-01 19 10114806 10114806 G T COL5A3 Missense_Mutation p.L204M 0.09 unknown(0) TCGA-85-8048-01 19 11216122 11216122 G T LDLR Missense_Mutation p.W180C 0.10 tolerated(0.12) probably_damaging(0.993) TCGA-85-8048-01 19 36303728 36303728 C A PRODH2 Nonsense_Mutation p.G70* 0.15 TCGA-85-8048-01 19 41096927 41096927 G A SHKBP1 Silent p.G646G 0.14 TCGA-85-8048-01 19 44570816 44570816 C G ZNF223 Missense_Mutation p.Q279E 0.09 deleterious(0.02) benign(0.121) TCGA-85-8048-01 19 55707961 55707961 G T PTPRH Missense_Mutation p.A729D 0.13 probably_damaging(0.989) TCGA-85-8048-01 19 57327267 57327267 T A PEG3 Missense_Mutation p.N848I 0.17 tolerated(0.2) benign(0.009) TCGA-85-8048-01 19 58850183 58850183 C T ZSCAN22 Missense_Mutation p.P323S 0.13 tolerated(0.06) possibly_damaging(0.804) TCGA-85-8048-01 19 7570496 7570496 A T C19orf45 Missense_Mutation p.Q330L 0.11 tolerated(0.12) benign(0.164) TCGA-85-8048-01 19 9452590 9452590 G T ZNF559 Missense_Mutation p.A155S 0.07 tolerated(0.07) benign(0.027) TCGA-85-8048-01 1 10436684 10436687 AAAG - KIF1B 3'UTR 0.24 TCGA-85-8048-01 1 150249019 150249019 G A C1orf54 Silent p.V93V 0.17 TCGA-85-8048-01 1 15844829 15844829 C T CASP9 Missense_Mutation p.R65Q 0.08 deleterious(0) probably_damaging(1) TCGA-85-8048-01 1 158817557 158817557 G C MNDA Missense_Mutation p.D343H 0.05 deleterious(0) probably_damaging(1) TCGA-85-8048-01 1 160915054 160915054 G T ITLN2 Missense_Mutation p.P285Q 0.10 deleterious(0.01) possibly_damaging(0.852) TCGA-85-8048-01 1 16272308 16272308 G T ZBTB17 Missense_Mutation p.A188E 0.10 tolerated_low_confidence(0.31) probably_damaging(0.989) TCGA-85-8048-01 1 167802258 167802258 A T ADCY10 Missense_Mutation p.V1187E 0.19 deleterious(0.05) benign(0.104) TCGA-85-8048-01 1 169076147 169076147 G A ATP1B1 Missense_Mutation p.R27K 0.12 deleterious(0) probably_damaging(0.949) TCGA-85-8048-01 1 176918319 176918319 A C ASTN1 Splice_Site p.X685_splice 0.12 TCGA-85-8048-01 1 18962810 18962810 G A PAX7 Silent p.E177E 0.10 TCGA-85-8048-01 1 203098188 203098188 A T ADORA1 Silent p.P73P 0.16 TCGA-85-8048-01 1 203144744 203144744 G A MYBPH Missense_Mutation p.P47L 0.11 deleterious_low_confidence(0.03) possibly_damaging(0.813) TCGA-85-8048-01 1 207640111 207640111 A T CR2 Missense_Mutation p.Y100F 0.11 tolerated(0.2) benign(0.022) TCGA-85-8048-01 1 213341217 213341217 C A RPS6KC1 Silent p.T284T 0.16 TCGA-85-8048-01 1 247737531 247737531 T A GCSAML Missense_Mutation p.N85K 0.09 tolerated(0.14) benign(0.402) TCGA-85-8048-01 1 247752353 247752353 T C OR2G2 Missense_Mutation p.I231T 0.05 deleterious(0.01) benign(0.344) TCGA-85-8048-01 1 248309120 248309120 C T OR2M5 Missense_Mutation p.A224V 0.08 deleterious(0.03) benign(0.253) TCGA-85-8048-01 1 46806577 46806577 T C NSUN4 Missense_Mutation p.Y27H 0.21 tolerated(0.78) benign(0.001) TCGA-85-8048-01 1 54605606 54605606 T C CDCP2 Missense_Mutation p.T313A 0.12 tolerated(0.54) benign(0.036) TCGA-85-8048-01 1 7730986 7730986 C A CAMTA1 Missense_Mutation p.L890I 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-85-8048-01 1 94564385 94564385 A G ABCA4 Missense_Mutation p.Y245H 0.08 tolerated(0.09) probably_damaging(0.999) TCGA-85-8048-01 20 33573973 33573973 C T MYH7B Silent p.I334I 0.18 TCGA-85-8048-01 21 35895949 35895949 C A RCAN1 Missense_Mutation p.K104N 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-85-8048-01 22 22735562 22735562 C G IGLV1-44 Missense_Mutation p.L67V 0.10 deleterious_low_confidence(0) benign(0.255) TCGA-85-8048-01 22 26937523 26937523 C T TPST2 Missense_Mutation p.G25E 0.12 deleterious(0.05) probably_damaging(0.999) TCGA-85-8048-01 22 32754367 32754367 C G RFPL3 Missense_Mutation p.I103M 0.09 tolerated(0.06) benign(0.051) TCGA-85-8048-01 22 32793981 32793981 A T RTCB Missense_Mutation p.V254E 0.11 deleterious(0) probably_damaging(0.937) TCGA-85-8048-01 22 35478655 35478655 G A ISX Missense_Mutation p.R125Q 0.25 deleterious(0) probably_damaging(1) TCGA-85-8048-01 2 113539350 113539350 T C IL1A Silent p.Q50Q 0.10 TCGA-85-8048-01 2 157186018 157186018 G A NR4A2 Silent p.P227P 0.09 TCGA-85-8048-01 2 16742792 16742792 G T FAM49A Missense_Mutation p.P149T 0.20 deleterious(0) probably_damaging(0.998) TCGA-85-8048-01 2 169985255 169985255 C G LRP2 Missense_Mutation p.R4629T 0.12 benign(0.015) TCGA-85-8048-01 2 179645952 179645952 T C TTN Missense_Mutation p.K1140R 0.17 TCGA-85-8048-01 2 241420355 241420355 G A ANKMY1 Silent p.I926I 0.11 TCGA-85-8048-01 2 69093607 69093607 T G BMP10 Missense_Mutation p.E144A 0.22 deleterious(0) probably_damaging(1) TCGA-85-8048-01 2 73491568 73491568 T G FBXO41 Silent p.P548P 0.07 TCGA-85-8048-01 2 90249331 90249331 C A IGKV1D-43 Missense_Mutation p.T96N 0.08 deleterious(0) probably_damaging(0.97) TCGA-85-8048-01 3 133465260 133465260 C A TF 5'UTR 0.17 TCGA-85-8048-01 3 169546561 169546561 G A LRRIQ4 Silent p.L345L 0.10 TCGA-85-8048-01 3 182872143 182872143 G A LAMP3 Missense_Mutation p.A29V 0.51 tolerated(0.47) benign(0.01) TCGA-85-8048-01 3 48218891 48218891 T C CDC25A Silent p.T242T 0.14 TCGA-85-8048-01 4 110763770 110763770 A G RRH Missense_Mutation p.Y289C 0.14 deleterious(0) probably_damaging(0.996) TCGA-85-8048-01 4 69344663 69344663 G C TMPRSS11E Missense_Mutation p.R355T 0.08 tolerated(0.07) benign(0.031) TCGA-85-8048-01 5 140229920 140229920 G A PCDHA9 Missense_Mutation p.E614K 0.16 tolerated_low_confidence(0.13) benign(0.045) TCGA-85-8048-01 5 140724398 140724398 C T PCDHGA3 Silent p.A266A 0.05 TCGA-85-8048-01 5 140739964 140739964 G T PCDHGB2 Missense_Mutation p.D88Y 0.10 deleterious(0.01) possibly_damaging(0.872) TCGA-85-8048-01 5 140794434 140794434 C T PCDHGA10 Silent p.P564P 0.08 TCGA-85-8048-01 5 158140116 158140116 G A EBF1 Silent p.L411L 0.09 TCGA-85-8048-01 5 16508774 16508774 A T FAM134B Intron 0.18 TCGA-85-8048-01 5 16675090 16675090 T C MYO10 Silent p.K1612K 0.19 TCGA-85-8048-01 5 168199858 168199858 G A SLIT3 Missense_Mutation p.R463C 0.07 deleterious(0) probably_damaging(0.991) TCGA-85-8048-01 5 171533644 171533644 C A STK10 Silent p.T256T 0.18 TCGA-85-8048-01 5 41160247 41160247 A T C6 Missense_Mutation p.S561T 0.09 deleterious(0) probably_damaging(0.987) TCGA-85-8048-01 5 71490195 71490195 G T MAP1B Missense_Mutation p.G338V 0.14 unknown(0) TCGA-85-8048-01 5 75428093 75428093 G T SV2C Missense_Mutation p.G173V 0.11 deleterious(0) probably_damaging(0.999) TCGA-85-8048-01 5 80409668 80409668 G A RASGRF2 Missense_Mutation p.G800E 0.09 tolerated_low_confidence(0.21) benign(0.003) TCGA-85-8048-01 6 119285832 119285832 C T FAM184A Silent p.K1046K 0.24 TCGA-85-8048-01 6 146350663 146350663 C A GRM1 Missense_Mutation p.L4I 0.09 tolerated_low_confidence(0.78) benign(0.001) TCGA-85-8048-01 6 26205085 26205085 G A HIST1H4E Silent p.V71V 0.12 TCGA-85-8048-01 6 29429856 29429856 T A OR2H1 Missense_Mutation p.S104T 0.27 tolerated(0.22) benign(0.003) TCGA-85-8048-01 6 46604196 46604196 C G CYP39A1 Missense_Mutation p.W221S 0.21 deleterious(0) probably_damaging(0.995) TCGA-85-8048-01 6 46620316 46620316 C G CYP39A1 Missense_Mutation p.E2Q 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.773) TCGA-85-8048-01 6 51889587 51889587 A G PKHD1 Missense_Mutation p.V1674A 0.14 deleterious(0.02) possibly_damaging(0.844) TCGA-85-8048-01 6 53516708 53516708 G A KLHL31 Silent p.D531D 0.22 TCGA-85-8048-01 6 56480359 56480359 C T DST Intron 0.14 TCGA-85-8048-01 6 99283511 99283511 G T POU3F2 Silent p.A254A 0.07 TCGA-85-8048-01 7 100348276 100348276 C A ZAN Missense_Mutation p.D426E 0.15 probably_damaging(0.914) TCGA-85-8048-01 7 113517978 113517978 C T PPP1R3A Missense_Mutation p.E1057K 0.11 tolerated(0.1) benign(0) TCGA-85-8048-01 7 127255637 127255637 G A PAX4 5'UTR 0.18 TCGA-85-8048-01 7 139715599 139715599 G A TBXAS1 Missense_Mutation p.V482M 0.05 deleterious(0.01) probably_damaging(0.994) TCGA-85-8048-01 7 148907773 148907773 C A ZNF282 Missense_Mutation p.A310D 0.15 tolerated(0.31) benign(0.058) TCGA-85-8048-01 7 149575792 149575792 C T ATP6V0E2 Intron 0.10 TCGA-85-8048-01 7 43684910 43684910 G A COA1 Silent p.L68L 0.17 TCGA-85-8048-01 7 45077908 45077908 T G CCM2 Missense_Mutation p.D50E 0.08 tolerated(0.17) probably_damaging(0.931) TCGA-85-8048-01 8 101196907 101196907 G A SPAG1 Missense_Mutation p.G216E 0.16 deleterious(0) probably_damaging(1) TCGA-85-8048-01 8 103317482 103317482 C A UBR5 Missense_Mutation p.E886D 0.12 tolerated(0.24) probably_damaging(0.952) TCGA-85-8048-01 8 110980331 110980331 C A KCNV1 Missense_Mutation p.D497Y 0.11 deleterious(0) possibly_damaging(0.707) TCGA-85-8048-01 8 125565390 125565390 C T MTSS1 Missense_Mutation p.S704N 0.08 tolerated(0.3) benign(0.131) TCGA-85-8048-01 8 22332542 22332542 T C PPP3CC Missense_Mutation p.L42S 0.38 deleterious(0) probably_damaging(1) TCGA-85-8048-01 8 38021351 38021351 T A LSM1 Missense_Mutation p.E80V 0.21 deleterious(0.01) benign(0.197) TCGA-85-8048-01 8 42294744 42294744 C A SLC20A2 Missense_Mutation p.R429L 0.09 deleterious(0.04) probably_damaging(1) TCGA-85-8048-01 8 87151730 87151730 C A ATP6V0D2 Missense_Mutation p.A116E 0.07 deleterious(0) benign(0.284) TCGA-85-8048-01 9 101594201 101594201 G C GALNT12 Missense_Mutation p.R293S 0.15 tolerated(0.09) benign(0.232) TCGA-85-8048-01 9 109697831 109697831 G T ZNF462 Missense_Mutation p.R2055L 0.08 probably_damaging(0.999) TCGA-85-8048-01 9 140139670 140139670 G T FAM166A Missense_Mutation p.L175M 0.09 tolerated(0.09) probably_damaging(0.999) TCGA-85-8048-01 9 140708954 140708954 C A EHMT1 Nonsense_Mutation p.Y1084* 0.13 TCGA-85-8048-01 9 21971065 21971065 T G CDKN2A Missense_Mutation p.H98P 0.15 tolerated(0.23) probably_damaging(0.927) TCGA-85-8048-01 X 125299313 125299313 C T DCAF12L2 Missense_Mutation p.A199T 0.24 tolerated(0.21) benign(0.081) TCGA-85-8048-01 X 128896672 128896672 C A XPNPEP2 Missense_Mutation p.P556T 0.16 deleterious(0) probably_damaging(0.999) TCGA-85-8048-01 X 152860070 152860070 C T FAM58A Missense_Mutation p.V120M 0.15 deleterious(0.02) probably_damaging(0.99) TCGA-85-8048-01 X 54224920 54224920 C A WNK3 Missense_Mutation p.G1747V 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.461) TCGA-85-8048-01 X 7175512 7175512 G T STS Missense_Mutation p.A94S 0.12 tolerated(0.12) possibly_damaging(0.778) TCGA-85-8049-01 10 135103341 135103341 C A TUBGCP2 Missense_Mutation p.K477N 0.12 deleterious(0.03) probably_damaging(0.998) TCGA-85-8049-01 10 135116419 135116419 G A TUBGCP2 Silent p.D9D 0.12 TCGA-85-8049-01 10 21784497 21784497 C A CASC10 3'UTR 0.14 TCGA-85-8049-01 10 23326316 23326316 G A ARMC3 Missense_Mutation p.A843T 0.10 tolerated(0.07) benign(0.005) TCGA-85-8049-01 10 38344896 38344896 G T ZNF33A Missense_Mutation p.G615V 0.09 deleterious(0) probably_damaging(0.993) TCGA-85-8049-01 10 55973768 55973768 A G PCDH15 Silent p.P342P 0.09 TCGA-85-8049-01 10 72061124 72061124 C G LRRC20 Missense_Mutation p.A181P 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.665) TCGA-85-8049-01 10 75560471 75560471 C T ZSWIM8 Silent p.P1700P 0.15 TCGA-85-8049-01 10 7618477 7618477 C A ITIH5 Missense_Mutation p.M639I 0.14 tolerated(0.19) benign(0.005) TCGA-85-8049-01 11 101353837 101353837 G A TRPC6 Silent p.T451T 0.06 TCGA-85-8049-01 11 105881557 105881557 C T MSANTD4 Missense_Mutation p.V30I 0.16 tolerated(0.56) benign(0.028) TCGA-85-8049-01 11 120180245 120180245 A C POU2F3 Missense_Mutation p.N342H 0.17 deleterious(0) probably_damaging(0.929) TCGA-85-8049-01 11 123777933 123777933 C A OR8D4 Missense_Mutation p.S265R 0.17 tolerated(0.36) benign(0.015) TCGA-85-8049-01 11 123811156 123811156 T C OR4D5 Missense_Mutation p.V278A 0.08 deleterious(0.01) benign(0.171) TCGA-85-8049-01 11 133807748 133807748 C A IGSF9B Missense_Mutation p.W173L 0.26 deleterious(0) possibly_damaging(0.713) TCGA-85-8049-01 11 18636464 18636464 C A SPTY2D1 Missense_Mutation p.V453F 0.08 tolerated(0.55) benign(0) TCGA-85-8049-01 11 22777490 22777490 C A GAS2 Silent p.L238L 0.11 TCGA-85-8049-01 11 4567029 4567029 G T OR52M1 Silent p.L203L 0.15 TCGA-85-8049-01 11 4661354 4661354 G A OR51D1 Missense_Mutation p.A112T 0.09 tolerated(0.44) benign(0.002) TCGA-85-8049-01 11 4843637 4843637 A T OR51F2 Missense_Mutation p.Y341F 0.07 tolerated_low_confidence(0.94) unknown(0) TCGA-85-8049-01 11 55872626 55872626 C A OR8H2 Nonsense_Mutation p.Y36* 0.09 TCGA-85-8049-01 11 55999907 55999907 A T OR5T2 Missense_Mutation p.I252N 0.08 deleterious(0) possibly_damaging(0.548) TCGA-85-8049-01 11 59940520 59940520 G T MS4A6A Missense_Mutation p.A239D 0.08 deleterious(0.03) possibly_damaging(0.675) TCGA-85-8049-01 11 67372462 67372462 G T C11orf72 Missense_Mutation p.L27I 0.14 possibly_damaging(0.567) TCGA-85-8049-01 11 6913161 6913161 C A OR2D2 Missense_Mutation p.D191Y 0.14 deleterious(0) probably_damaging(0.996) TCGA-85-8049-01 11 94278569 94278569 G A FUT4 Missense_Mutation p.E424K 0.10 deleterious(0) probably_damaging(1) TCGA-85-8049-01 12 133219102 133219102 C A POLE Nonsense_Mutation p.E1648* 0.11 TCGA-85-8049-01 12 247847 247847 C G IQSEC3 Missense_Mutation p.L440V 0.29 tolerated_low_confidence(0.13) possibly_damaging(0.766) TCGA-85-8049-01 12 2800370 2800370 C T CACNA1C 3'UTR 0.38 TCGA-85-8049-01 12 28122642 28122649 GCTTTCTC - PTHLH Intron 0.29 TCGA-85-8049-01 12 30834614 30834614 T G IPO8 Missense_Mutation p.Y154S 0.12 deleterious(0.03) benign(0.291) TCGA-85-8049-01 12 31850877 31850877 C T AMN1 Missense_Mutation p.A111T 0.11 deleterious(0) possibly_damaging(0.77) TCGA-85-8049-01 12 34175423 34175423 G A ALG10 5'UTR 0.12 TCGA-85-8049-01 12 58002984 58002984 C T DTX3 3'UTR 0.10 TCGA-85-8049-01 12 68051664 68051664 G T DYRK2 Missense_Mutation p.R326L 0.15 deleterious(0) probably_damaging(0.996) TCGA-85-8049-01 12 70933763 70933763 A C PTPRB Silent p.R1878R 0.15 TCGA-85-8049-01 12 70974840 70974840 G T PTPRB Missense_Mutation p.Q852K 0.17 tolerated(0.1) probably_damaging(0.917) TCGA-85-8049-01 12 85638565 85638565 A G LRRIQ1 Splice_Site p.X1673_splice 0.15 TCGA-85-8049-01 12 994301 994301 G A WNK1 Missense_Mutation p.S1444N 0.12 tolerated_low_confidence(0.06) benign(0.023) TCGA-85-8049-01 12 99837520 99837520 T G ANKS1B Silent p.P502P 0.11 TCGA-85-8049-01 13 110437825 110437825 G A IRS2 Silent p.A192A 0.27 TCGA-85-8049-01 13 26828881 26828881 G T CDK8 Missense_Mutation p.V35F 0.13 deleterious(0) probably_damaging(1) TCGA-85-8049-01 13 27246061 27246061 G T WASF3 Missense_Mutation p.D159Y 0.15 deleterious(0) possibly_damaging(0.683) TCGA-85-8049-01 13 32351556 32351556 T A RXFP2 Missense_Mutation p.F229I 0.13 deleterious(0.01) possibly_damaging(0.882) TCGA-85-8049-01 14 105420881 105420881 G A AHNAK2 Nonsense_Mutation p.Q303* 0.14 TCGA-85-8049-01 14 106452693 106452693 G A IGHV1-2 Missense_Mutation p.T110M 0.10 tolerated(0.1) possibly_damaging(0.51) TCGA-85-8049-01 14 106805610 106805610 G T IGHV4-31 Missense_Mutation p.A12E 0.11 tolerated_low_confidence(0.06) possibly_damaging(0.79) TCGA-85-8049-01 14 22180579 22180579 C A TRAV2 Missense_Mutation p.A9E 0.12 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-85-8049-01 14 38725106 38725106 T C CLEC14A Missense_Mutation p.H41R 0.40 deleterious(0.01) probably_damaging(0.982) TCGA-85-8049-01 14 45433474 45433474 A G FAM179B Missense_Mutation p.N617S 0.08 tolerated(0.28) possibly_damaging(0.493) TCGA-85-8049-01 14 76668112 76668112 C T GPATCH2L Missense_Mutation p.T456I 0.06 tolerated_low_confidence(0.05) benign(0.009) TCGA-85-8049-01 14 89327631 89327631 T A TTC8 Missense_Mutation p.F288L 0.10 deleterious(0.03) benign(0.124) TCGA-85-8049-01 14 95108208 95108208 C G SERPINA13P RNA 0.13 TCGA-85-8049-01 15 20488790 20488790 T A CHEK2P2 RNA 0.09 TCGA-85-8049-01 15 22369300 22369300 G C OR4M2 Missense_Mutation p.C242S 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-85-8049-01 15 22939190 22939190 C G CYFIP1 Missense_Mutation p.P306A 0.07 deleterious(0.02) possibly_damaging(0.899) TCGA-85-8049-01 15 25417636 25417636 C A SNORD115-3 5'Flank 0.16 TCGA-85-8049-01 15 34355598 34355598 T C CHRM5 Missense_Mutation p.L227P 0.15 deleterious(0) probably_damaging(1) TCGA-85-8049-01 15 34628807 34628807 A C SLC12A6 Missense_Mutation p.I25M 0.14 tolerated_low_confidence(0.14) benign(0.003) TCGA-85-8049-01 15 35045256 35045256 G A GJD2 Missense_Mutation p.T130I 0.16 tolerated(0.29) benign(0) TCGA-85-8049-01 15 39874629 39874629 G T THBS1 Silent p.R101R 0.12 TCGA-85-8049-01 15 45658335 45658335 A C GATM Missense_Mutation p.F296C 0.15 deleterious(0.04) possibly_damaging(0.718) TCGA-85-8049-01 15 54306188 54306188 T A UNC13C Missense_Mutation p.I363K 0.16 deleterious_low_confidence(0.01) benign(0.179) TCGA-85-8049-01 15 59347889 59347889 C T RNF111 Missense_Mutation p.S339L 0.10 deleterious(0) possibly_damaging(0.72) TCGA-85-8049-01 16 10032002 10032002 G T GRIN2A Nonsense_Mutation p.S274* 0.08 TCGA-85-8049-01 16 11349053 11349053 C A SOCS1 Missense_Mutation p.A95S 0.13 tolerated(1) benign(0.024) TCGA-85-8049-01 16 15026531 15026531 C G NPIPA1 5'Flank 0.09 TCGA-85-8049-01 16 20996675 20996675 G T DNAH3 Missense_Mutation p.N2463K 0.08 tolerated(0.11) benign(0.141) TCGA-85-8049-01 16 22926553 22926553 G A HS3ST2 Silent p.E258E 0.12 TCGA-85-8049-01 16 64981529 64981529 C T CDH11 Missense_Mutation p.D790N 0.09 deleterious(0.03) probably_damaging(0.996) TCGA-85-8049-01 16 74729250 74729250 C T MLKL Missense_Mutation p.E136K 0.10 deleterious(0.01) probably_damaging(0.94) TCGA-85-8049-01 16 86601151 86601151 G C FOXC2 Silent p.L70L 0.13 TCGA-85-8049-01 16 87885346 87885346 G A SLC7A5 Silent p.F216F 0.10 TCGA-85-8049-01 17 10600850 10600850 G A SCO1 5'UTR 0.08 TCGA-85-8049-01 17 11671935 11671935 C A DNAH9 Missense_Mutation p.P2446T 0.21 benign(0.378) TCGA-85-8049-01 17 12649373 12649373 A T MYOCD Missense_Mutation p.N370I 0.19 deleterious(0) probably_damaging(0.999) TCGA-85-8049-01 17 21730975 21730975 G T UBBP4 Missense_Mutation p.V93L 0.15 tolerated(0.06) possibly_damaging(0.465) TCGA-85-8049-01 17 26925631 26925631 G A SPAG5 Missense_Mutation p.P25L 0.09 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-85-8049-01 17 37865629 37865629 G A ERBB2 Silent p.T166T 0.17 TCGA-85-8049-01 17 54990789 54990789 A C TRIM25 Silent p.S187S 0.08 TCGA-85-8049-01 17 67092867 67092867 C T ABCA6 Missense_Mutation p.V1066I 0.07 tolerated(1) benign(0.015) TCGA-85-8049-01 17 67150086 67150086 C A ABCA10 Missense_Mutation p.G1284V 0.10 deleterious(0) probably_damaging(0.997) TCGA-85-8049-01 17 6930143 6930143 C A BCL6B Missense_Mutation p.R392S 0.23 tolerated(0.08) benign(0.053) TCGA-85-8049-01 17 7578468 7578468 G A TP53 Silent p.G154G 0.16 TCGA-85-8049-01 17 7578469 7578469 C A TP53 Missense_Mutation p.G154V 0.17 deleterious(0) probably_damaging(0.961) TCGA-85-8049-01 17 7578475 7578475 G T TP53 Missense_Mutation p.P152Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-85-8049-01 17 7719956 7719956 G A DNAH2 Missense_Mutation p.R3266H 0.18 benign(0.114) TCGA-85-8049-01 18 24081167 24081180 TGCAGGGGATCTAG - KCTD1 Frame_Shift_Del p.T7Ifs*24 0.11 TCGA-85-8049-01 18 63489353 63489353 A C CDH7 Missense_Mutation p.E221A 0.16 deleterious(0) probably_damaging(0.995) TCGA-85-8049-01 19 1044688 1044688 A G ABCA7 Missense_Mutation p.Q387R 0.15 tolerated(1) benign(0.001) TCGA-85-8049-01 19 12015549 12015549 A T ZNF69 Missense_Mutation p.N99Y 0.13 deleterious(0.01) possibly_damaging(0.873) TCGA-85-8049-01 19 17448849 17448849 C T GTPBP3 Missense_Mutation p.A29V 0.15 tolerated(0.48) benign(0.004) TCGA-85-8049-01 19 18876288 18876288 A T CRTC1 Missense_Mutation p.R337W 0.19 deleterious(0) probably_damaging(1) TCGA-85-8049-01 19 22363176 22363176 G T ZNF676 Missense_Mutation p.P448H 0.08 deleterious(0) possibly_damaging(0.757) TCGA-85-8049-01 19 22574567 22574567 G T ZNF98 Nonsense_Mutation p.Y490* 0.08 TCGA-85-8049-01 19 46808572 46808572 C T HIF3A Silent p.F96F 0.17 TCGA-85-8049-01 19 51452215 51452215 A G KLK5 Silent p.R164R 0.21 TCGA-85-8049-01 19 51527990 51527990 G A KLK11 Missense_Mutation p.P66L 0.17 deleterious(0.01) probably_damaging(0.991) TCGA-85-8049-01 19 51958029 51958029 A T SIGLEC8 Missense_Mutation p.S353T 0.20 tolerated(0.65) benign(0) TCGA-85-8049-01 19 52619005 52619005 C T ZNF616 Missense_Mutation p.G471D 0.12 tolerated(0.1) probably_damaging(0.948) TCGA-85-8049-01 19 53474030 53474030 G - ZNF702P RNA 0.16 TCGA-85-8049-01 19 53571914 53571914 C A ZNF160 Nonsense_Mutation p.E625* 0.15 TCGA-85-8049-01 19 54080408 54080408 G A ZNF331 Nonsense_Mutation p.W198* 0.17 TCGA-85-8049-01 19 54313131 54313131 C T NLRP12 Nonsense_Mutation p.W594* 0.20 TCGA-85-8049-01 19 56382346 56382346 C A NLRP4 Nonsense_Mutation p.C836* 0.08 TCGA-85-8049-01 19 56935443 56935443 A G ZNF583 Silent p.T472T 0.09 TCGA-85-8049-01 19 6368634 6368634 C T CLPP Silent p.P249P 0.17 TCGA-85-8049-01 19 806415 806415 C A PTBP1 Silent p.S326S 0.11 TCGA-85-8049-01 19 9074603 9074603 C T MUC16 Missense_Mutation p.M4281I 0.11 unknown(0) TCGA-85-8049-01 19 9640208 9640208 C - ZNF426 Frame_Shift_Del p.N172Tfs*37 0.10 TCGA-85-8049-01 1 102269994 102269994 C T OLFM3 Missense_Mutation p.G393R 0.15 deleterious(0) probably_damaging(1) TCGA-85-8049-01 1 12016973 12016973 G A PLOD1 Splice_Site p.X215_splice 0.20 TCGA-85-8049-01 1 12198423 12198423 C T TNFRSF8 Silent p.A491A 0.18 TCGA-85-8049-01 1 153660619 153660619 T G NPR1 Missense_Mutation p.M780R 0.10 deleterious(0) probably_damaging(0.996) TCGA-85-8049-01 1 200880979 200880979 G A C1orf106 Missense_Mutation p.R453H 0.33 tolerated(0.28) benign(0.084) TCGA-85-8049-01 1 207647643 207647643 G C CR2 Missense_Mutation p.W766C 0.08 deleterious(0) probably_damaging(0.992) TCGA-85-8049-01 1 207785118 207785118 C A CR1 Missense_Mutation p.P2131H 0.12 deleterious(0) probably_damaging(0.999) TCGA-85-8049-01 1 214170115 214170115 G A PROX1 Silent p.S79S 0.26 TCGA-85-8049-01 1 216062109 216062109 G T USH2A Missense_Mutation p.P2628T 0.32 possibly_damaging(0.809) TCGA-85-8049-01 1 237838139 237838139 G C RYR2 Silent p.L2941L 0.08 TCGA-85-8049-01 1 243419320 243419320 A T SDCCAG8 5'Flank 0.24 TCGA-85-8049-01 1 244724249 244724249 A G C1orf101 Missense_Mutation p.T437A 0.09 tolerated(0.91) benign(0.002) TCGA-85-8049-01 1 248020756 248020756 C T TRIM58 Missense_Mutation p.R70C 0.36 deleterious(0) probably_damaging(0.996) TCGA-85-8049-01 1 248263459 248263459 C A OR2L13 Missense_Mutation p.P261H 0.06 deleterious(0) probably_damaging(1) TCGA-85-8049-01 1 248402648 248402648 C A OR2M4 Missense_Mutation p.L140I 0.05 tolerated(0.53) benign(0.006) TCGA-85-8049-01 1 32374508 32374508 C A PTP4A2 Missense_Mutation p.R150L 0.18 deleterious(0.03) benign(0.352) TCGA-85-8049-01 1 47685530 47685530 G T TAL1 Silent p.S286S 0.18 TCGA-85-8049-01 1 60505653 60505653 G A C1orf87 Missense_Mutation p.P228L 0.19 deleterious(0.04) benign(0.072) TCGA-85-8049-01 1 66062268 66062268 A T LEPR Missense_Mutation p.I281F 0.12 tolerated(0.43) benign(0.067) TCGA-85-8049-01 1 76384686 76384686 G A ASB17 Missense_Mutation p.S280L 0.08 tolerated(0.13) possibly_damaging(0.849) TCGA-85-8049-01 20 37356420 37356420 C G SLC32A1 Missense_Mutation p.S239W 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-85-8049-01 20 44171412 44171412 G C EPPIN Silent p.V106V 0.21 TCGA-85-8049-01 20 50407692 50407692 C T SALL4 Missense_Mutation p.E444K 0.18 deleterious(0) benign(0.21) TCGA-85-8049-01 20 51870688 51870688 A G TSHZ2 Missense_Mutation p.T231A 0.13 deleterious(0) probably_damaging(0.991) TCGA-85-8049-01 21 46102056 46102056 T A KRTAP12-1 5'UTR 0.21 TCGA-85-8049-01 22 18222153 18222189 GGCCGTTCACCAGGCCCGGAGGGATGCTACGGTCCAT - BID Frame_Shift_Del p.M143Wfs*67 0.13 TCGA-85-8049-01 22 19431749 19431749 G C C22orf39 3'UTR 0.22 TCGA-85-8049-01 22 36122417 36122417 T A APOL5 Nonsense_Mutation p.L101* 0.25 TCGA-85-8049-01 22 38165373 38165373 C T TRIOBP Silent p.C2280C 0.12 TCGA-85-8049-01 2 113785489 113785489 A C IL36B Intron 0.18 TCGA-85-8049-01 2 125204358 125204358 C G CNTNAP5 Missense_Mutation p.S254R 0.23 tolerated(0.37) benign(0.367) TCGA-85-8049-01 2 128380944 128380944 C G MYO7B Nonsense_Mutation p.Y1245* 0.14 TCGA-85-8049-01 2 155555326 155555326 G A KCNJ3 Silent p.Q13Q 0.10 TCGA-85-8049-01 2 155555327 155555327 G T KCNJ3 Missense_Mutation p.V14L 0.10 deleterious(0.02) benign(0.094) TCGA-85-8049-01 2 170361117 170361117 C A BBS5 3'UTR 0.18 TCGA-85-8049-01 2 178098945 178098945 G C NFE2L2 Missense_Mutation p.R34G 0.22 deleterious(0) probably_damaging(1) TCGA-85-8049-01 2 179611557 179611557 G T TTN Intron 0.20 TCGA-85-8049-01 2 190728599 190728599 G C PMS1 Missense_Mutation p.A663P 0.16 tolerated(0.2) possibly_damaging(0.786) TCGA-85-8049-01 2 204255806 204255806 G T ABI2 Missense_Mutation p.R167L 0.08 deleterious(0.02) probably_damaging(0.984) TCGA-85-8049-01 2 20478578 20478578 C A PUM2 Missense_Mutation p.G575C 0.07 deleterious(0.01) benign(0.183) TCGA-85-8049-01 2 207989042 207989042 G A KLF7 Silent p.H63H 0.14 TCGA-85-8049-01 2 211442213 211442213 G T CPS1 Silent p.G156G 0.13 TCGA-85-8049-01 2 220078012 220078012 G A ABCB6 Nonsense_Mutation p.Q586* 0.09 TCGA-85-8049-01 2 220315884 220315884 G T SPEG Missense_Mutation p.A714S 0.17 probably_damaging(0.991) TCGA-85-8049-01 2 234431823 234431823 C T USP40 Missense_Mutation p.D743N 0.05 tolerated(0.13) benign(0.012) TCGA-85-8049-01 2 241622057 241622057 G T AQP12B Missense_Mutation p.D66E 0.12 deleterious(0) benign(0.054) TCGA-85-8049-01 2 26537462 26537462 C A GPR113 Missense_Mutation p.G318C 0.07 deleterious(0) probably_damaging(0.996) TCGA-85-8049-01 2 27799579 27799579 G C C2orf16 Missense_Mutation p.R47T 0.17 deleterious(0.01) benign(0.003) TCGA-85-8049-01 2 66739412 66739412 T C MEIS1 Missense_Mutation p.F292L 0.15 deleterious(0.01) probably_damaging(0.986) TCGA-85-8049-01 2 89399369 89399369 G T IGKV1-16 Missense_Mutation p.Q112K 0.07 deleterious(0.02) benign(0.109) TCGA-85-8049-01 2 90078096 90078096 G T IGKV3D-20 Missense_Mutation p.A45S 0.09 tolerated(0.23) benign(0.209) TCGA-85-8049-01 2 98458394 98458394 C T TMEM131 Missense_Mutation p.G203S 0.14 deleterious(0) probably_damaging(1) TCGA-85-8049-01 2 98928335 98928335 C T VWA3B Missense_Mutation p.A1192V 0.09 tolerated_low_confidence(0.62) benign(0.004) TCGA-85-8049-01 3 108819324 108819324 C A MORC1 Missense_Mutation p.R85L 0.07 tolerated(0.09) benign(0.087) TCGA-85-8049-01 3 113866363 113866363 G T DRD3 Missense_Mutation p.T142K 0.06 deleterious(0) possibly_damaging(0.632) TCGA-85-8049-01 3 121303910 121303910 A T ARGFX Nonsense_Mutation p.K123* 0.12 TCGA-85-8049-01 3 124237409 124237409 T G KALRN 3'UTR 0.06 TCGA-85-8049-01 3 132244623 132244623 C G DNAJC13 Missense_Mutation p.S2077C 0.08 deleterious(0) benign(0.012) TCGA-85-8049-01 3 142274850 142274850 T G ATR Missense_Mutation p.H737P 0.08 tolerated(0.36) benign(0) TCGA-85-8049-01 3 169487387 169487387 C A ACTRT3 5'UTR 0.31 TCGA-85-8049-01 3 183776322 183776322 G T HTR3C Missense_Mutation p.A223S 0.30 tolerated(0.34) benign(0.117) TCGA-85-8049-01 3 183776323 183776323 C T HTR3C Missense_Mutation p.A223V 0.30 tolerated(0.11) possibly_damaging(0.589) TCGA-85-8049-01 3 3887120 3887120 G T LRRN1 Missense_Mutation p.L265F 0.08 deleterious(0) probably_damaging(1) TCGA-85-8049-01 3 38946805 38946805 A T SCN11A Missense_Mutation p.L494H 0.17 tolerated(0.07) possibly_damaging(0.907) TCGA-85-8049-01 3 45942530 45942530 G A CCR9 Missense_Mutation p.D84N 0.09 deleterious(0) probably_damaging(0.991) TCGA-85-8049-01 3 49698384 49698384 C G BSN Missense_Mutation p.P3036A 0.19 unknown(0) TCGA-85-8049-01 3 62484879 62484879 T C CADPS Silent p.L888L 0.20 TCGA-85-8049-01 3 9949957 9949957 C T IL17RE Missense_Mutation p.P234L 0.17 deleterious(0.02) benign(0.129) TCGA-85-8049-01 4 115858626 115858626 C A NDST4 Missense_Mutation p.V419L 0.11 deleterious(0) probably_damaging(0.989) TCGA-85-8049-01 4 13602244 13602244 C T BOD1L1 Missense_Mutation p.G2094S 0.08 possibly_damaging(0.53) TCGA-85-8049-01 4 144135697 144135697 G C USP38 Silent p.G856G 0.10 TCGA-85-8049-01 4 156773408 156773408 G A ASIC5 Missense_Mutation p.L216F 0.09 tolerated(0.41) benign(0.005) TCGA-85-8049-01 4 159569774 159569774 C G RXFP1 Missense_Mutation p.A627G 0.07 deleterious(0) probably_damaging(0.999) TCGA-85-8049-01 4 164246398 164246398 G C NPY1R 3'UTR 0.11 TCGA-85-8049-01 4 166231807 166231807 C A KLHL2 Missense_Mutation p.T385N 0.08 tolerated(0.38) benign(0.013) TCGA-85-8049-01 4 177136800 177136800 G A ASB5 Missense_Mutation p.P314L 0.09 tolerated(0.25) benign(0.426) TCGA-85-8049-01 4 183675723 183675723 A T TENM3 Silent p.T1401T 0.11 TCGA-85-8049-01 4 38910234 38910234 G A FAM114A1 Missense_Mutation p.G227S 0.10 deleterious(0.04) probably_damaging(1) TCGA-85-8049-01 4 55971026 55971026 G T KDR Missense_Mutation p.L591M 0.08 deleterious(0.04) benign(0.337) TCGA-85-8049-01 4 66356335 66356335 C G EPHA5 Missense_Mutation p.D388H 0.10 deleterious(0) probably_damaging(0.999) TCGA-85-8049-01 4 6711082 6711082 C G MRFAP1L1 Missense_Mutation p.R92T 0.10 deleterious(0.04) benign(0.005) TCGA-85-8049-01 4 78532231 78532231 T G CXCL13 3'UTR 0.06 TCGA-85-8049-01 4 96124025 96124025 T C UNC5C Missense_Mutation p.S665G 0.13 tolerated(1) benign(0) TCGA-85-8049-01 5 112102021 112102021 A T APC Splice_Site p.X46_splice 0.07 TCGA-85-8049-01 5 125939431 125939431 A G PHAX Missense_Mutation p.N89S 0.16 tolerated(0.11) benign(0.015) TCGA-85-8049-01 5 129037140 129037140 G T ADAMTS19 Missense_Mutation p.R999I 0.18 deleterious(0) probably_damaging(0.971) TCGA-85-8049-01 5 132223543 132223543 G A AFF4 Silent p.L976L 0.06 TCGA-85-8049-01 5 140250391 140250391 A T PCDHA11 Missense_Mutation p.Q568L 0.08 tolerated_low_confidence(0.75) benign(0) TCGA-85-8049-01 5 140530947 140530947 A G PCDHB6 Missense_Mutation p.D370G 0.19 deleterious(0) probably_damaging(1) TCGA-85-8049-01 5 140753678 140753678 C A PCDHGA6 Missense_Mutation p.R10S 0.15 tolerated_low_confidence(0.39) benign(0.029) TCGA-85-8049-01 5 140768947 140768947 T C PCDHGB4 Missense_Mutation p.L499P 0.07 deleterious(0.01) probably_damaging(0.995) TCGA-85-8049-01 5 1432761 1432763 GTT - SLC6A3 In_Frame_Del p.N157del 0.10 TCGA-85-8049-01 5 145969552 145969552 C T PPP2R2B Silent p.A433A 0.09 TCGA-85-8049-01 5 155028 155028 T C PLEKHG4B Silent p.F321F 0.18 TCGA-85-8049-01 5 177580708 177580708 G T NHP2 Silent p.P37P 0.15 TCGA-85-8049-01 5 178392949 178392950 AG - ZNF454 Frame_Shift_Del p.R516Tfs*9 0.18 TCGA-85-8049-01 5 32087796 32087796 C A PDZD2 Nonsense_Mutation p.C1414* 0.18 TCGA-85-8049-01 5 38350696 38350696 C A EGFLAM Silent p.R129R 0.17 TCGA-85-8049-01 5 41749664 41749664 C A OXCT1 Nonsense_Mutation p.G462* 0.08 TCGA-85-8049-01 5 476454 476454 C T SLC9A3 Missense_Mutation p.E644K 0.09 tolerated(0.38) benign(0.405) TCGA-85-8049-01 5 482224 482224 C T SLC9A3 Missense_Mutation p.E469K 0.09 deleterious(0.05) possibly_damaging(0.625) TCGA-85-8049-01 6 105577304 105577304 A T BVES Missense_Mutation p.L101M 0.15 tolerated(0.24) possibly_damaging(0.861) TCGA-85-8049-01 6 106553695 106553695 A G PRDM1 Missense_Mutation p.R554G 0.16 deleterious(0.01) possibly_damaging(0.776) TCGA-85-8049-01 6 135539117 135539117 G A MYB Silent p.%3D 0.17 TCGA-85-8049-01 6 152453326 152453326 A G SYNE1 Silent p.A8675A 0.07 TCGA-85-8049-01 6 25488786 25488786 G A LRRC16A Silent p.G346G 0.21 TCGA-85-8049-01 6 27833333 27833334 GG A HIST1H2AL Frame_Shift_Del p.G68Afs*34 0.14 TCGA-85-8049-01 6 70034805 70034805 C A BAI3 Missense_Mutation p.F952L 0.07 deleterious(0.02) probably_damaging(0.987) TCGA-85-8049-01 6 70916993 70916993 G T COL19A1 3'UTR 0.14 TCGA-85-8049-01 6 7247407 7247407 G A RREB1 Missense_Mutation p.R1575Q 0.08 deleterious(0) probably_damaging(0.994) TCGA-85-8049-01 6 96651685 96651685 C T FUT9 Silent p.Y218Y 0.12 TCGA-85-8049-01 7 100417895 100417895 G A EPHB4 Missense_Mutation p.P278S 0.16 tolerated(0.77) benign(0.079) TCGA-85-8049-01 7 102993307 102993307 C A PSMC2 Intron 0.17 TCGA-85-8049-01 7 117305606 117305606 C T CFTR Silent p.C1410C 0.17 TCGA-85-8049-01 7 121942090 121942090 C A FEZF1 Silent p.P463P 0.18 TCGA-85-8049-01 7 123182145 123182145 C G NDUFA5 3'UTR 0.15 TCGA-85-8049-01 7 135272741 135272741 G A NUP205 Splice_Site p.X491_splice 0.07 TCGA-85-8049-01 7 141429365 141429365 C A WEE2 Missense_Mutation p.Q524K 0.17 tolerated(0.63) benign(0.003) TCGA-85-8049-01 7 141952316 141952316 C A PRSS58 Silent p.V184V 0.13 TCGA-85-8049-01 7 146818176 146818176 G T CNTNAP2 Missense_Mutation p.S287I 0.12 deleterious(0.02) benign(0.016) TCGA-85-8049-01 7 149508027 149508027 G T SSPO RNA 0.15 TCGA-85-8049-01 7 23401199 23401199 T C IGF2BP3 Missense_Mutation p.T119A 0.16 deleterious(0.02) possibly_damaging(0.501) TCGA-85-8049-01 7 38393546 38393546 C A TRGV4 Missense_Mutation p.D42Y 0.18 deleterious(0) possibly_damaging(0.9) TCGA-85-8049-01 7 4002403 4002403 C G SDK1 Missense_Mutation p.P450R 0.12 tolerated(0.07) benign(0.179) TCGA-85-8049-01 7 4830755 4830755 A G AP5Z1 Silent p.L721L 0.15 TCGA-85-8049-01 7 57187573 57187573 C A ZNF479 Nonsense_Mutation p.G517* 0.14 TCGA-85-8049-01 7 75183476 75183476 C A HIP1 Missense_Mutation p.L698F 0.11 deleterious(0.02) possibly_damaging(0.635) TCGA-85-8049-01 7 8198177 8198177 G T ICA1 Missense_Mutation p.H229N 0.16 deleterious(0) possibly_damaging(0.627) TCGA-85-8049-01 7 88847592 88847592 G A ZNF804B Missense_Mutation p.D78N 0.06 deleterious(0.01) probably_damaging(0.977) TCGA-85-8049-01 7 99117830 99117831 - T ZKSCAN5 Frame_Shift_Ins p.S226Ffs*19 0.14 TCGA-85-8049-01 8 109796863 109796863 C T TMEM74 Silent p.L155L 0.06 TCGA-85-8049-01 8 113267589 113267589 C A CSMD3 Missense_Mutation p.Q3310H 0.13 deleterious(0.04) benign(0.065) TCGA-85-8049-01 8 12952630 12952630 C T DLC1 Missense_Mutation p.A1098T 0.14 deleterious(0) probably_damaging(1) TCGA-85-8049-01 8 133051344 133051344 G - OC90 Frame_Shift_Del p.L162Cfs*9 0.15 TCGA-85-8049-01 8 139144977 139144977 A G FAM135B Silent p.T1360T 0.14 TCGA-85-8049-01 8 139164719 139164719 C A FAM135B Nonsense_Mutation p.E667* 0.17 TCGA-85-8049-01 8 13948036 13948036 G A SGCZ Silent p.V285V 0.11 TCGA-85-8049-01 8 139815162 139815162 T A COL22A1 Missense_Mutation p.I504F 0.13 unknown(0) TCGA-85-8049-01 8 142154290 142154290 A G DENND3 Missense_Mutation p.S143G 0.12 tolerated(0.08) benign(0.027) TCGA-85-8049-01 8 143996188 143996188 C - CYP11B2 Frame_Shift_Del p.S245Lfs*51 0.12 TCGA-85-8049-01 8 144297406 144297406 C T GPIHBP1 3'UTR 0.25 TCGA-85-8049-01 8 144358543 144358543 A C GLI4 Missense_Mutation p.T234P 0.12 deleterious(0) probably_damaging(0.998) TCGA-85-8049-01 8 26365352 26365352 A C PNMA2 Missense_Mutation p.M307R 0.07 tolerated(0.33) benign(0) TCGA-85-8049-01 8 30889857 30889857 T G PURG Silent p.R148R 0.14 TCGA-85-8049-01 8 41503929 41503929 G A NKX6-3 3'UTR 0.18 TCGA-85-8049-01 8 55539303 55539303 G T RP1 Missense_Mutation p.G954V 0.10 tolerated(0.2) benign(0.239) TCGA-85-8049-01 8 55539304 55539304 G T RP1 Silent p.G954G 0.10 TCGA-85-8049-01 8 59404306 59404306 C T CYP7A1 Missense_Mutation p.E415K 0.09 tolerated(0.05) benign(0.384) TCGA-85-8049-01 8 61121440 61121440 C A CA8 Silent p.G259G 0.18 TCGA-85-8049-01 8 73937190 73937190 C A TERF1 Nonsense_Mutation p.S253* 0.06 TCGA-85-8049-01 8 81577241 81577241 C A ZNF704 Missense_Mutation p.V246L 0.12 tolerated(0.67) benign(0.047) TCGA-85-8049-01 8 87241939 87241939 C A SLC7A13 Missense_Mutation p.V190L 0.07 tolerated(0.42) benign(0.029) TCGA-85-8049-01 8 89131048 89131048 G T MMP16 Missense_Mutation p.A251D 0.12 deleterious(0) probably_damaging(0.998) TCGA-85-8049-01 8 89209481 89209481 G T MMP16 Missense_Mutation p.L63M 0.10 tolerated(1) possibly_damaging(0.658) TCGA-85-8049-01 9 120475564 120475564 T G TLR4 Missense_Mutation p.S386R 0.11 tolerated(0.05) probably_damaging(0.999) TCGA-85-8049-01 9 123538401 123538401 T A FBXW2 Silent p.T263T 0.20 TCGA-85-8049-01 9 5233775 5233775 A T INSL4 Missense_Mutation p.K106N 0.21 deleterious(0.01) possibly_damaging(0.895) TCGA-85-8049-01 9 90254397 90254397 C A DAPK1 Silent p.V184V 0.12 TCGA-85-8049-01 X 101096271 101096271 T C NXF5 Missense_Mutation p.Q118R 0.18 tolerated(0.06) benign(0.022) TCGA-85-8049-01 X 101096272 101096272 G T NXF5 Missense_Mutation p.Q118K 0.18 tolerated(0.12) benign(0.004) TCGA-85-8049-01 X 147018133 147018133 G T FMR1 Splice_Site p.X330_splice 0.18 TCGA-85-8049-01 X 31090124 31090124 G T FTHL17 5'UTR 0.36 TCGA-85-8049-01 X 31462679 31462679 C A DMD Missense_Mutation p.Q3001H 0.23 benign(0.387) TCGA-85-8049-01 X 48650418 48650418 A T GATA1 Missense_Mutation p.T130S 0.27 tolerated(0.3) benign(0.001) TCGA-85-8049-01 X 53618061 53618061 T A HUWE1 Missense_Mutation p.R1332W 0.28 probably_damaging(0.999) TCGA-85-8049-01 X 53618062 53618062 T G HUWE1 Silent p.T1331T 0.26 TCGA-85-8049-01 X 70603842 70603842 G A TAF1 Missense_Mutation p.G680S 0.25 deleterious(0) probably_damaging(1) TCGA-85-8049-01 X 90691335 90691335 A G PABPC5 Silent p.Q253Q 0.24 TCGA-85-8052-01 10 55755492 55755492 G A PCDH15 Nonsense_Mutation p.R929* 0.06 TCGA-85-8052-01 10 75003270 75003270 T C DNAJC9 Missense_Mutation p.Q224R 0.12 deleterious(0.02) possibly_damaging(0.71) TCGA-85-8052-01 10 78850180 78850180 C T KCNMA1 Missense_Mutation p.V438M 0.43 deleterious(0.02) possibly_damaging(0.887) TCGA-85-8052-01 10 93558611 93558611 C T TNKS2 Missense_Mutation p.A55V 0.20 tolerated(0.3) possibly_damaging(0.798) TCGA-85-8052-01 10 94825737 94825737 G T CYP26C1 Missense_Mutation p.A296S 0.40 deleterious(0.03) benign(0.116) TCGA-85-8052-01 10 95347249 95347249 G A FFAR4 Missense_Mutation p.M339I 0.34 tolerated(0.23) benign(0.008) TCGA-85-8052-01 11 20083897 20083897 T C NAV2 Missense_Mutation p.Y1682H 0.04 tolerated(0.05) probably_damaging(0.998) TCGA-85-8052-01 11 2924582 2924582 G A SLC22A18 Missense_Mutation p.G3R 0.15 deleterious(0) benign(0.017) TCGA-85-8052-01 11 4112725 4112725 G T STIM1 Silent p.A585A 0.38 TCGA-85-8052-01 11 5153362 5153362 G A OR52A5 Missense_Mutation p.H171Y 0.23 tolerated(1) benign(0.001) TCGA-85-8052-01 11 55065654 55065654 C G TRIM51HP RNA 0.23 TCGA-85-8052-01 11 55578968 55578968 T A OR5L1 Missense_Mutation p.V9E 0.10 tolerated(0.38) benign(0.083) TCGA-85-8052-01 11 55999794 55999794 A G OR5T2 Missense_Mutation p.Y290H 0.24 deleterious(0.02) probably_damaging(0.987) TCGA-85-8052-01 11 6867764 6867764 C T OR10A5 Missense_Mutation p.P284L 0.30 deleterious(0) probably_damaging(0.981) TCGA-85-8052-01 11 82922383 82922383 C T ANKRD42 Missense_Mutation p.A138V 0.23 deleterious(0) probably_damaging(1) TCGA-85-8052-01 11 9077458 9077458 T C SCUBE2 Splice_Site p.X364_splice 0.27 TCGA-85-8052-01 12 102589128 102589128 T G PARPBP Silent p.T434T 0.35 TCGA-85-8052-01 12 117698284 117698284 C A NOS1 Missense_Mutation p.A785S 0.17 deleterious(0) probably_damaging(1) TCGA-85-8052-01 12 129558655 129558655 G C TMEM132D Missense_Mutation p.P1022R 0.24 tolerated(0.18) benign(0.008) TCGA-85-8052-01 12 13716435 13716435 T C GRIN2B Missense_Mutation p.K1246R 0.18 tolerated(0.07) probably_damaging(0.996) TCGA-85-8052-01 12 33031857 33031857 T C PKP2 Silent p.L111L 0.25 TCGA-85-8052-01 12 51696911 51696911 C A BIN2 Missense_Mutation p.K59N 0.16 deleterious(0) possibly_damaging(0.81) TCGA-85-8052-01 12 52307830 52307830 C T ACVRL1 Missense_Mutation p.R200W 0.16 deleterious(0) probably_damaging(1) TCGA-85-8052-01 12 65113864 65113864 C A GNS Silent p.R506R 0.09 TCGA-85-8052-01 12 6646918 6646918 G A GAPDH Missense_Mutation p.A232T 0.09 deleterious_low_confidence(0.02) probably_damaging(0.919) TCGA-85-8052-01 12 70928388 70928388 T C PTPRB Missense_Mutation p.Y2083C 0.37 deleterious(0) probably_damaging(1) TCGA-85-8052-01 12 75444577 75444577 G T KCNC2 Missense_Mutation p.A403D 0.09 deleterious(0) probably_damaging(1) TCGA-85-8052-01 13 100637218 100637218 G T ZIC2 Missense_Mutation p.C365F 0.42 deleterious(0) probably_damaging(0.999) TCGA-85-8052-01 13 49039341 49039341 C - RB1 Frame_Shift_Del p.P777Lfs*33 0.33 TCGA-85-8052-01 14 106367002 106367002 A T IGHD6-13 Missense_Mutation p.Y7N 0.27 unknown(0) TCGA-85-8052-01 14 47566231 47566231 C A MDGA2 Missense_Mutation p.A341S 0.14 tolerated(0.52) benign(0.006) TCGA-85-8052-01 14 52923877 52923877 C A TXNDC16 Missense_Mutation p.S545I 0.15 tolerated(0.33) benign(0.002) TCGA-85-8052-01 14 60074135 60074135 G A RTN1 Missense_Mutation p.S614F 0.19 deleterious(0) probably_damaging(1) TCGA-85-8052-01 14 68117640 68117640 G A VTI1B 3'UTR 0.11 TCGA-85-8052-01 14 99642039 99642039 C A BCL11B Silent p.P378P 0.38 TCGA-85-8052-01 15 40265170 40265170 A C EIF2AK4 Missense_Mutation p.I539L 0.29 tolerated(0.37) benign(0.009) TCGA-85-8052-01 15 51791755 51791755 G C DMXL2 Missense_Mutation p.I1222M 0.20 tolerated(0.15) probably_damaging(0.999) TCGA-85-8052-01 15 56686370 56686370 G A TEX9 Silent p.Q193Q 0.11 TCGA-85-8052-01 15 75122507 75122507 G A CPLX3 Missense_Mutation p.G97R 0.21 deleterious(0.04) possibly_damaging(0.611) TCGA-85-8052-01 15 83832807 83832807 G A HDGFRP3 Silent p.G35G 0.17 TCGA-85-8052-01 16 20492161 20492161 C A ACSM2A Nonsense_Mutation p.S476* 0.22 TCGA-85-8052-01 16 48145573 48145573 C A ABCC12 Missense_Mutation p.D709Y 0.13 deleterious(0) possibly_damaging(0.615) TCGA-85-8052-01 16 55522574 55522574 G T MMP2 Missense_Mutation p.G318C 0.48 deleterious(0) probably_damaging(0.924) TCGA-85-8052-01 16 57597766 57597766 G T GPR114 Missense_Mutation p.G102C 0.20 deleterious(0.02) benign(0.439) TCGA-85-8052-01 16 57597767 57597767 G T GPR114 Missense_Mutation p.G102V 0.20 tolerated(0.1) benign(0.159) TCGA-85-8052-01 16 61687931 61687931 G A CDH8 Nonsense_Mutation p.R661* 0.27 TCGA-85-8052-01 16 81927351 81927351 C G PLCG2 Missense_Mutation p.P342A 0.15 tolerated(0.4) benign(0.061) TCGA-85-8052-01 16 89260252 89260252 C T CDH15 Silent p.G694G 0.20 TCGA-85-8052-01 17 52993233 52993233 G A TOM1L1 Intron 0.08 TCGA-85-8052-01 17 726905 726905 C A NXN Silent p.G193G 0.36 TCGA-85-8052-01 17 7577551 7577551 C T TP53 Missense_Mutation p.G244S 0.38 deleterious(0) probably_damaging(1) TCGA-85-8052-01 18 29041219 29041219 A C DSG3 Missense_Mutation p.L281F 0.38 deleterious(0) probably_damaging(0.914) TCGA-85-8052-01 19 12384780 12384780 G A ZNF44 Missense_Mutation p.P145L 0.12 tolerated(0.53) benign(0.001) TCGA-85-8052-01 19 15559140 15559140 C G WIZ 5'UTR 0.24 TCGA-85-8052-01 19 18121503 18121503 G C ARRDC2 Missense_Mutation p.E379Q 0.28 deleterious(0.01) benign(0.191) TCGA-85-8052-01 19 35835796 35835796 C T CD22 Silent p.I700I 0.05 TCGA-85-8052-01 19 35835797 35835797 C A CD22 Missense_Mutation p.L701M 0.04 deleterious(0.01) probably_damaging(0.999) TCGA-85-8052-01 19 36370068 36370068 G T APLP1 Silent p.L602L 0.17 TCGA-85-8052-01 19 36399168 36399168 G A TYROBP 5'UTR 0.44 TCGA-85-8052-01 19 40421259 40421259 A G FCGBP Missense_Mutation p.Y888H 0.36 probably_damaging(1) TCGA-85-8052-01 19 42396878 42396878 G A ARHGEF1 Missense_Mutation p.R206Q 0.25 deleterious(0.01) possibly_damaging(0.604) TCGA-85-8052-01 19 42879930 42879930 G T MEGF8 Missense_Mutation p.R2447L 0.24 tolerated(0.17) possibly_damaging(0.579) TCGA-85-8052-01 19 53770910 53770910 G T VN1R4 Silent p.S3S 0.12 TCGA-85-8052-01 19 54611426 54611426 G A TFPT Silent p.P183P 0.13 TCGA-85-8052-01 19 55142521 55142521 C G LILRB1 5'UTR 0.20 TCGA-85-8052-01 19 58489957 58489957 T C ZNF606 Silent p.A697A 0.17 TCGA-85-8052-01 19 9362499 9362499 C T OR7E24 Silent p.G260G 0.25 TCGA-85-8052-01 1 104162218 104162218 G T AMY2A Nonsense_Mutation p.E186* 0.16 TCGA-85-8052-01 1 146687359 146687359 T C FMO5 Missense_Mutation p.K97E 0.39 tolerated(0.66) benign(0.052) TCGA-85-8052-01 1 158576646 158576646 C G OR10Z1 Missense_Mutation p.L140V 0.13 tolerated(1) benign(0.004) TCGA-85-8052-01 1 161512852 161512852 C T FCGR3A Missense_Mutation p.D275N 0.10 tolerated(0.19) benign(0.051) TCGA-85-8052-01 1 175323619 175323619 T A TNR Missense_Mutation p.E1097V 0.20 tolerated(0.3) probably_damaging(1) TCGA-85-8052-01 1 197407686 197407686 A T CRB1 Missense_Mutation p.R1253S 0.27 deleterious(0.05) probably_damaging(0.928) TCGA-85-8052-01 1 242253270 242253270 G - PLD5 Frame_Shift_Del p.T501Pfs*63 0.19 TCGA-85-8052-01 1 29602114 29602114 G - PTPRU Frame_Shift_Del p.T434Pfs*6 0.35 TCGA-85-8052-01 1 60506728 60506728 G A C1orf87 Missense_Mutation p.P140S 0.33 deleterious(0) probably_damaging(0.999) TCGA-85-8052-01 1 75039122 75039122 C A C1orf173 Nonsense_Mutation p.E758* 0.15 TCGA-85-8052-01 1 75039123 75039123 C A C1orf173 Missense_Mutation p.K757N 0.16 deleterious(0.02) benign(0.055) TCGA-85-8052-01 1 75078325 75078325 C A C1orf173 Missense_Mutation p.R390I 0.18 deleterious(0) probably_damaging(0.935) TCGA-85-8052-01 20 30458168 30458168 C G DUSP15 5'UTR 0.26 TCGA-85-8052-01 20 30458169 30458169 C A DUSP15 5'UTR 0.24 TCGA-85-8052-01 20 55212838 55212838 G T TFAP2C Silent p.G374G 0.28 TCGA-85-8052-01 21 33064718 33064718 T C SCAF4 Missense_Mutation p.T520A 0.18 possibly_damaging(0.848) TCGA-85-8052-01 22 36681355 36681355 G A MYH9 Silent p.D1765D 0.15 TCGA-85-8052-01 22 42341254 42341254 C T CENPM Silent p.G95G 0.30 TCGA-85-8052-01 2 148693262 148693262 A C ORC4 Missense_Mutation p.F376L 0.31 deleterious(0) probably_damaging(0.962) TCGA-85-8052-01 2 149247325 149247325 C T MBD5 Missense_Mutation p.A1142V 0.14 deleterious_low_confidence(0) unknown(0) TCGA-85-8052-01 2 162730509 162730509 G A SLC4A10 Silent p.E314E 0.31 TCGA-85-8052-01 2 170042079 170042079 T C LRP2 Missense_Mutation p.N3260S 0.15 benign(0.022) TCGA-85-8052-01 2 178098810 178098810 C G NFE2L2 Missense_Mutation p.E79Q 0.46 deleterious(0) probably_damaging(1) TCGA-85-8052-01 2 179318135 179318136 AT - DFNB59 5'UTR p.M1? 0.14 TCGA-85-8052-01 2 179435793 179435793 A G TTN Silent p.S25022S 0.13 TCGA-85-8052-01 2 179640200 179640200 C T TTN Missense_Mutation p.D2131N 0.07 TCGA-85-8052-01 2 235405204 235405204 C T ARL4C Silent p.S9S 0.11 TCGA-85-8052-01 2 238249672 238249672 G T COL6A3 Silent p.T2629T 0.09 TCGA-85-8052-01 2 240969148 240969148 G T OR6B2 Silent p.G233G 0.13 TCGA-85-8052-01 2 27321968 27321968 G T CGREF1 3'Flank 0.13 TCGA-85-8052-01 2 39963918 39963918 G A THUMPD2 Missense_Mutation p.A490V 0.12 deleterious(0) probably_damaging(0.999) TCGA-85-8052-01 2 69706107 69706107 C G AAK1 Missense_Mutation p.A886P 0.31 deleterious(0.04) probably_damaging(0.914) TCGA-85-8052-01 2 71894545 71894545 A C DYSF Missense_Mutation p.E1786A 0.35 tolerated(0.07) benign(0.087) TCGA-85-8052-01 2 84806653 84806653 G A DNAH6 Silent p.V693V 0.27 TCGA-85-8052-01 2 88474170 88474170 G A THNSL2 Missense_Mutation p.R79Q 0.22 tolerated(0.17) benign(0.004) TCGA-85-8052-01 3 113379697 113379697 G T KIAA2018 Missense_Mutation p.Q278K 0.20 benign(0.03) TCGA-85-8052-01 3 121208682 121208682 T A POLQ Silent p.S1032S 0.21 TCGA-85-8052-01 3 121412879 121412879 A T GOLGB1 Missense_Mutation p.I2164N 0.06 possibly_damaging(0.5) TCGA-85-8052-01 3 140397234 140397234 T A TRIM42 Missense_Mutation p.C55S 0.23 deleterious(0.01) probably_damaging(0.972) TCGA-85-8052-01 3 150403602 150403602 G C FAM194A Missense_Mutation p.T237R 0.19 deleterious(0) probably_damaging(0.994) TCGA-85-8052-01 3 157131840 157131840 T C VEPH1 Missense_Mutation p.K246E 0.24 tolerated(0.69) benign(0.009) TCGA-85-8052-01 3 172114989 172114989 A G FNDC3B Silent p.S1113S 0.06 TCGA-85-8052-01 3 180320003 180320003 C T TTC14 5'UTR 0.27 TCGA-85-8052-01 3 185797638 185797638 C T ETV5 Missense_Mutation p.M206I 0.08 tolerated(0.39) benign(0.001) TCGA-85-8052-01 3 196654670 196654670 A G SENP5 Missense_Mutation p.I676V 0.23 deleterious(0.03) probably_damaging(0.994) TCGA-85-8052-01 3 38010916 38010916 A T CTDSPL Intron 0.20 TCGA-85-8052-01 3 47018140 47018140 T G CCDC12 Missense_Mutation p.K41T 0.40 deleterious(0) possibly_damaging(0.691) TCGA-85-8052-01 4 187004925 187004925 T G TLR3 Silent p.S695S 0.11 TCGA-85-8052-01 4 77292581 77292581 G - CCDC158 Frame_Shift_Del p.Q380Kfs*14 0.27 TCGA-85-8052-01 4 90035152 90035152 C T TIGD2 Missense_Mutation p.L343F 0.21 deleterious(0.04) possibly_damaging(0.853) TCGA-85-8052-01 5 112175951 112175952 - A APC Frame_Shift_Ins p.T1556Nfs*3 0.26 TCGA-85-8052-01 5 112257910 112257910 G C REEP5 5'UTR 0.40 TCGA-85-8052-01 5 133494176 133494176 T C SKP1 Silent p.K142K 0.04 TCGA-85-8052-01 5 149915425 149915425 G T NDST1 Missense_Mutation p.G472V 0.15 deleterious(0) probably_damaging(0.995) TCGA-85-8052-01 5 150563117 150563117 G A CCDC69 Missense_Mutation p.R258W 0.36 deleterious(0.01) probably_damaging(0.927) TCGA-85-8052-01 5 218448 218448 A G SDHA 5'UTR 0.25 TCGA-85-8052-01 5 32089354 32089354 C T PDZD2 Missense_Mutation p.R1934W 0.09 deleterious(0.01) possibly_damaging(0.8) TCGA-85-8052-01 5 75886273 75886273 A G IQGAP2 Silent p.K227K 0.06 TCGA-85-8052-01 5 86633881 86633881 T C RASA1 Silent p.L330L 0.14 TCGA-85-8052-01 6 132891931 132891931 G C TAAR6 Missense_Mutation p.W157C 0.22 deleterious(0) probably_damaging(0.999) TCGA-85-8052-01 6 132910616 132910616 G A TAAR5 Silent p.N70N 0.16 TCGA-85-8052-01 6 152650988 152650988 C A SYNE1 Silent p.L4944L 0.16 TCGA-85-8052-01 6 34392471 34392471 T C RPS10 Silent p.P99P 0.25 TCGA-85-8052-01 6 489013 489013 C - EXOC2 Frame_Shift_Del p.A883Pfs*18 0.20 TCGA-85-8052-01 6 51893075 51893075 C A PKHD1 Missense_Mutation p.D1147Y 0.16 deleterious(0.02) possibly_damaging(0.77) TCGA-85-8052-01 6 55142238 55142238 C G HCRTR2 Missense_Mutation p.P275A 0.24 tolerated(0.53) benign(0.004) TCGA-85-8052-01 6 72889581 72889581 G T RIMS1 Missense_Mutation p.A259S 0.48 tolerated(0.48) benign(0.031) TCGA-85-8052-01 6 75798861 75798861 T C COL12A1 Missense_Mutation p.T2991A 0.19 benign(0.001) TCGA-85-8052-01 6 85457656 85457656 A G TBX18 Silent p.T307T 0.42 TCGA-85-8052-01 6 85472344 85472344 G C TBX18 Missense_Mutation p.P139A 0.36 tolerated(0.97) benign(0.099) TCGA-85-8052-01 6 99374422 99374422 G A FBXL4 Missense_Mutation p.P148L 0.20 deleterious(0) probably_damaging(0.999) TCGA-85-8052-01 6 99887674 99887674 A T USP45 Missense_Mutation p.L711I 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-85-8052-01 7 107323651 107323651 T A SLC26A4 Missense_Mutation p.L257Q 0.34 deleterious(0) probably_damaging(0.981) TCGA-85-8052-01 7 124532367 124532367 T C POT1 Missense_Mutation p.Y26C 0.24 tolerated(0.1) probably_damaging(1) TCGA-85-8052-01 7 138943309 138943309 C G UBN2 Missense_Mutation p.R247G 0.12 deleterious(0) probably_damaging(0.992) TCGA-85-8052-01 7 33376202 33376202 A G BBS9 Missense_Mutation p.Q389R 0.40 deleterious(0.04) possibly_damaging(0.493) TCGA-85-8052-01 7 71036348 71036348 G T WBSCR17 Missense_Mutation p.M347I 0.31 deleterious(0) benign(0.021) TCGA-85-8052-01 7 72717738 72717738 C G NSUN5 Splice_Site p.X382_splice 0.41 TCGA-85-8052-01 7 86468898 86468898 T C GRM3 Missense_Mutation p.F690L 0.22 tolerated(0.13) benign(0.001) TCGA-85-8052-01 8 100887808 100887808 T A VPS13B Missense_Mutation p.Y3995N 0.12 deleterious(0) possibly_damaging(0.485) TCGA-85-8052-01 8 10467539 10467539 C G RP1L1 Missense_Mutation p.E1357Q 0.06 unknown(0) TCGA-85-8052-01 8 116616163 116616163 T C TRPS1 Missense_Mutation p.E678G 0.15 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-85-8052-01 8 116616827 116616827 C A TRPS1 Nonsense_Mutation p.E457* 0.19 TCGA-85-8052-01 8 1728678 1728678 A T CLN8 Missense_Mutation p.E269V 0.29 tolerated(0.12) benign(0.024) TCGA-85-8052-01 8 37823864 37823864 C - ADRB3 Frame_Shift_Del p.A42Pfs*30 0.17 TCGA-85-8052-01 8 73480462 73480462 G A KCNB2 Missense_Mutation p.E165K 0.20 deleterious(0) possibly_damaging(0.806) TCGA-85-8052-01 8 87474012 87474012 G A WWP1 Missense_Mutation p.G869E 0.22 deleterious(0) probably_damaging(1) TCGA-85-8052-01 9 125329875 125329875 G C OR1L8 Missense_Mutation p.N294K 0.28 deleterious(0) possibly_damaging(0.839) TCGA-85-8052-01 9 126794782 126794782 G A LHX2 Silent p.A339A 0.15 TCGA-85-8052-01 9 136256491 136256491 A G C9orf96 Missense_Mutation p.S168G 0.14 tolerated(0.13) benign(0.216) TCGA-85-8052-01 9 140777310 140777310 A C CACNA1B Missense_Mutation p.M169L 0.05 tolerated(0.28) benign(0.003) TCGA-85-8052-01 9 19328105 19328105 C T DENND4C Missense_Mutation p.P733L 0.28 deleterious(0.01) benign(0.127) TCGA-85-8052-01 9 36219880 36219880 C T GNE Missense_Mutation p.A622T 0.06 deleterious_low_confidence(0) possibly_damaging(0.563) TCGA-85-8052-01 9 73152165 73152165 G A TRPM3 Silent p.A1276A 0.07 TCGA-85-8052-01 9 97767442 97767442 G A C9orf3 Silent p.P660P 0.14 TCGA-85-8052-01 X 15365473 15365473 G A FIGF Missense_Mutation p.H251Y 0.38 tolerated(0.36) benign(0.002) TCGA-85-8052-01 X 49958633 49958633 C A AKAP4 Missense_Mutation p.S244I 0.62 deleterious(0.01) probably_damaging(0.912) TCGA-85-8070-01 10 115971750 115971750 A T TDRD1 Nonsense_Mutation p.K596* 0.32 TCGA-85-8070-01 10 119003619 119003619 A G SLC18A2 Missense_Mutation p.M87V 0.35 tolerated(0.96) benign(0.001) TCGA-85-8070-01 10 124329682 124329682 A T DMBT1 Silent p.S32S 0.32 TCGA-85-8070-01 10 129350818 129350818 T A NPS Nonsense_Mutation p.L62* 0.07 TCGA-85-8070-01 10 64958396 64958396 C T JMJD1C Missense_Mutation p.E1790K 0.15 tolerated(0.66) possibly_damaging(0.496) TCGA-85-8070-01 10 64960308 64960308 C G JMJD1C Missense_Mutation p.R1735T 0.38 deleterious(0) probably_damaging(0.998) TCGA-85-8070-01 10 7608071 7608071 C A ITIH5 Missense_Mutation p.A817S 0.83 tolerated(0.27) probably_damaging(0.919) TCGA-85-8070-01 10 98155051 98155051 C A TLL2 Missense_Mutation p.G540V 0.48 deleterious(0) probably_damaging(0.982) TCGA-85-8070-01 11 10822128 10822128 T C EIF4G2 Missense_Mutation p.M571V 0.06 deleterious(0.04) benign(0.233) TCGA-85-8070-01 11 108544195 108544200 TAAATG - DDX10 In_Frame_Del p.V65_N66del 0.31 TCGA-85-8070-01 11 120989258 120989258 C T TECTA Missense_Mutation p.A345V 0.43 deleterious(0.01) benign(0.3) TCGA-85-8070-01 11 121498439 121498439 G T SORL1 Missense_Mutation p.R2180S 0.46 deleterious(0.01) probably_damaging(0.998) TCGA-85-8070-01 11 125547822 125547822 A G ACRV1 Silent p.D141D 0.48 TCGA-85-8070-01 11 126162908 126162908 C A TIRAP Missense_Mutation p.P202T 0.10 tolerated(0.06) possibly_damaging(0.492) TCGA-85-8070-01 11 133790893 133790893 C T IGSF9B Silent p.K909K 0.04 TCGA-85-8070-01 11 14526648 14526648 C T PSMA1 3'UTR 0.38 TCGA-85-8070-01 11 16119220 16119220 C A SOX6 Missense_Mutation p.V305L 0.16 tolerated(0.59) benign(0.277) TCGA-85-8070-01 11 20805321 20805321 C A NELL1 Missense_Mutation p.Q94K 0.30 tolerated(1) benign(0.001) TCGA-85-8070-01 11 47199940 47199940 G A PACSIN3 Missense_Mutation p.A379V 0.50 tolerated(0.36) possibly_damaging(0.721) TCGA-85-8070-01 11 47741583 47741583 T G FNBP4 Missense_Mutation p.Q954P 0.50 deleterious(0) probably_damaging(0.993) TCGA-85-8070-01 11 49598040 49598040 A T RP11-707M1.1 RNA 0.24 TCGA-85-8070-01 11 51412326 51412326 C G OR4A5 Missense_Mutation p.A24P 0.48 deleterious_low_confidence(0.01) possibly_damaging(0.866) TCGA-85-8070-01 11 5475407 5475407 C T OR51I2 Missense_Mutation p.S230F 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-85-8070-01 11 55419276 55419276 G T OR4S2 Silent p.L299L 0.44 TCGA-85-8070-01 11 59225156 59225156 G T OR4D6 Silent p.T241T 0.48 TCGA-85-8070-01 11 60105337 60105337 G T MS4A6E Missense_Mutation p.D91Y 0.25 deleterious(0.05) benign(0.343) TCGA-85-8070-01 11 61672267 61672267 G C RAB3IL1 Missense_Mutation p.R249G 0.36 deleterious(0) possibly_damaging(0.669) TCGA-85-8070-01 11 62415461 62415461 T C INTS5 Silent p.L697L 0.42 TCGA-85-8070-01 11 62553840 62553841 AA - TAF6L Frame_Shift_Del p.K357Sfs*93 0.37 TCGA-85-8070-01 11 63149650 63149650 A C SLC22A9 Missense_Mutation p.K325T 0.16 deleterious(0) possibly_damaging(0.648) TCGA-85-8070-01 11 6589799 6589799 T C DNHD1 Silent p.S4218S 0.47 TCGA-85-8070-01 11 66618606 66618606 C T PC Missense_Mutation p.V710M 0.08 tolerated(0.36) probably_damaging(0.992) TCGA-85-8070-01 11 92918974 92918974 T G SLC36A4 Missense_Mutation p.D21A 0.15 deleterious(0.01) benign(0.114) TCGA-85-8070-01 11 93545276 93545276 G A MED17 3'UTR 0.21 TCGA-85-8070-01 12 100904553 100904553 C G NR1H4 Intron 0.46 TCGA-85-8070-01 12 104142867 104142867 T C STAB2 Missense_Mutation p.I2124T 0.47 deleterious(0) benign(0.219) TCGA-85-8070-01 12 120935920 120935920 G TT DYNLL1 Frame_Shift_Ins p.R60* 0.38 TCGA-85-8070-01 12 123109161 123109161 G T KNTC1 Missense_Mutation p.V2178F 0.39 deleterious(0.01) benign(0.136) TCGA-85-8070-01 12 24989477 24989477 T - BCAT1 Frame_Shift_Del p.R303Gfs*26 0.34 TCGA-85-8070-01 12 30819141 30819141 G A IPO8 Missense_Mutation p.L397F 0.31 tolerated(0.05) possibly_damaging(0.6) TCGA-85-8070-01 12 56716461 56716461 G A PAN2 Missense_Mutation p.R863C 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-85-8070-01 12 6657939 6657939 T C IFFO1 Missense_Mutation p.D378G 0.12 deleterious(0.04) possibly_damaging(0.474) TCGA-85-8070-01 12 66725270 66725270 G A HELB Missense_Mutation p.A1003T 0.38 deleterious(0.04) benign(0.025) TCGA-85-8070-01 12 81746944 81746944 C A PPFIA2 Missense_Mutation p.A650S 0.15 deleterious(0.01) possibly_damaging(0.857) TCGA-85-8070-01 12 88381644 88381644 C A C12orf50 Missense_Mutation p.R267I 0.39 deleterious(0.01) possibly_damaging(0.691) TCGA-85-8070-01 12 99640090 99640090 G T ANKS1B Missense_Mutation p.S770Y 0.50 deleterious(0.02) possibly_damaging(0.733) TCGA-85-8070-01 13 101320880 101320880 C T TMTC4 Missense_Mutation p.D58N 0.82 tolerated(0.4) benign(0.007) TCGA-85-8070-01 13 32914795 32914795 T G BRCA2 Missense_Mutation p.N2101K 0.85 deleterious(0.02) benign(0.069) TCGA-85-8070-01 13 47409229 47409229 A G HTR2A Missense_Mutation p.Y387H 0.79 deleterious(0) probably_damaging(0.998) TCGA-85-8070-01 13 78477419 78477419 T A EDNRB Missense_Mutation p.I315F 0.81 deleterious(0) probably_damaging(0.996) TCGA-85-8070-01 14 101349246 101349246 G T RTL1 Missense_Mutation p.A627D 0.75 tolerated(0.09) probably_damaging(0.998) TCGA-85-8070-01 14 106209208 106209208 G C IGHG1 Missense_Mutation p.S67R 0.91 deleterious(0) probably_damaging(1) TCGA-85-8070-01 14 106967202 106967202 C G IGHV1-46 Missense_Mutation p.W66C 0.71 deleterious(0) probably_damaging(0.998) TCGA-85-8070-01 14 19553749 19553749 G C POTEG Silent p.G111G 0.10 TCGA-85-8070-01 14 23898470 23898470 C G MYH7 Missense_Mutation p.E409Q 0.17 deleterious(0) probably_damaging(0.979) TCGA-85-8070-01 14 74205348 74205348 C G ELMSAN1 Missense_Mutation p.R455P 0.82 tolerated(0.06) possibly_damaging(0.8) TCGA-85-8070-01 14 94007124 94007124 G A UNC79 Missense_Mutation p.D314N 0.92 tolerated(0.19) possibly_damaging(0.794) TCGA-85-8070-01 15 20496633 20496633 G T CHEK2P2 RNA 0.14 TCGA-85-8070-01 15 22368987 22368987 C T OR4M2 Nonsense_Mutation p.Q138* 0.13 TCGA-85-8070-01 15 25494407 25494407 A G SNORD115-43 RNA 0.09 TCGA-85-8070-01 15 27182445 27182445 G C GABRA5 Missense_Mutation p.V232L 0.29 tolerated(0.22) benign(0.022) TCGA-85-8070-01 15 30054587 30054587 C A TJP1 Missense_Mutation p.S215I 0.44 deleterious(0) possibly_damaging(0.667) TCGA-85-8070-01 15 37391543 37391544 - CAT MEIS2 Intron 0.50 TCGA-85-8070-01 15 41366610 41366610 T C INO80 Missense_Mutation p.I429V 0.30 tolerated(0.18) benign(0.003) TCGA-85-8070-01 15 42740386 42740386 C A ZNF106 Missense_Mutation p.A984S 0.52 tolerated(0.37) benign(0.09) TCGA-85-8070-01 15 43820478 43820478 A G MAP1A Silent p.S2269S 0.56 TCGA-85-8070-01 15 48779516 48779516 C T FBN1 Silent p.A1152A 0.09 TCGA-85-8070-01 15 49170322 49170322 G T EID1 5'UTR 0.42 TCGA-85-8070-01 15 51696718 51696718 G A GLDN Missense_Mutation p.A475T 0.55 deleterious(0) probably_damaging(0.998) TCGA-85-8070-01 15 54305776 54305776 C A UNC13C Missense_Mutation p.L226M 0.51 tolerated_low_confidence(0.06) possibly_damaging(0.766) TCGA-85-8070-01 15 75652009 75652009 G A MAN2C1 Missense_Mutation p.R634W 0.44 deleterious(0) probably_damaging(0.987) TCGA-85-8070-01 15 97328411 97328411 C G SPATA8 3'UTR 0.56 TCGA-85-8070-01 16 20974987 20974987 A T DNAH3 Missense_Mutation p.Y3407N 0.83 tolerated(0.11) benign(0.021) TCGA-85-8070-01 16 25252049 25252049 G A ZKSCAN2 Silent p.I664I 0.49 TCGA-85-8070-01 16 31388508 31388508 A G ITGAX Missense_Mutation p.N904S 0.40 deleterious(0) probably_damaging(0.987) TCGA-85-8070-01 16 3807901 3807901 C T CREBBP Missense_Mutation p.R1173Q 0.94 unknown(0) TCGA-85-8070-01 16 71736590 71736591 - A PHLPP2 Frame_Shift_Ins p.Y110Lfs*8 0.46 TCGA-85-8070-01 16 81391420 81391420 G T GAN Missense_Mutation p.R286L 0.91 deleterious(0.02) benign(0.103) TCGA-85-8070-01 17 21319853 21319853 G A KCNJ12 Missense_Mutation p.S400N 0.13 tolerated(0.41) benign(0.018) TCGA-85-8070-01 17 27075086 27075086 C G TRAF4 Missense_Mutation p.P118A 0.36 tolerated(0.22) benign(0.007) TCGA-85-8070-01 17 29645542 29645542 A G EVI2A Missense_Mutation p.S187P 0.36 deleterious(0) probably_damaging(0.999) TCGA-85-8070-01 17 37627992 37627992 T A CDK12 Nonsense_Mutation p.L636* 0.40 TCGA-85-8070-01 17 38179068 38179068 C G MED24 Missense_Mutation p.K754N 0.37 tolerated(0.06) benign(0.372) TCGA-85-8070-01 17 39674941 39674941 A C KRT15 Missense_Mutation p.S47A 0.44 tolerated(0.16) unknown(0) TCGA-85-8070-01 17 42293111 42293111 T A UBTF Nonsense_Mutation p.K129* 0.38 TCGA-85-8070-01 17 61514756 61514756 G A CYB561 Silent p.N51N 0.26 TCGA-85-8070-01 17 62018978 62018978 G A SCN4A Missense_Mutation p.P1555L 0.41 tolerated(0.07) probably_damaging(1) TCGA-85-8070-01 17 65688891 65688891 C T PITPNC1 Missense_Mutation p.R296W 0.41 deleterious_low_confidence(0) probably_damaging(1) TCGA-85-8070-01 17 73125176 73125176 C T ARMC7 3'UTR 0.86 TCGA-85-8070-01 17 7576928 7576928 T C TP53 Splice_Site p.X307_splice 0.90 TCGA-85-8070-01 17 78327382 78327382 G A RNF213 Silent p.E3498E 0.06 TCGA-85-8070-01 17 7851538 7851538 A G CNTROB Missense_Mutation p.H758R 0.70 deleterious_low_confidence(0.05) probably_damaging(0.995) TCGA-85-8070-01 18 14534910 14534910 T A POTEC Nonsense_Mutation p.R303* 0.15 TCGA-85-8070-01 18 580657 580657 G C CETN1 Missense_Mutation p.K83N 0.52 tolerated(0.18) benign(0.11) TCGA-85-8070-01 18 74625759 74625759 G C ZNF236 Missense_Mutation p.R987P 0.25 deleterious(0) probably_damaging(1) TCGA-85-8070-01 19 10610306 10610306 C T KEAP1 Missense_Mutation p.R135H 0.96 deleterious(0.01) probably_damaging(0.997) TCGA-85-8070-01 19 13067823 13067823 G A GADD45GIP1 Silent p.S68S 1.00 TCGA-85-8070-01 19 33696834 33696834 G T LRP3 Silent p.L386L 0.21 TCGA-85-8070-01 19 36352897 36352897 G T KIRREL2 Missense_Mutation p.G494V 0.50 deleterious(0) benign(0.273) TCGA-85-8070-01 19 46307819 46307819 C T RSPH6A Silent p.Q448Q 0.92 TCGA-85-8070-01 19 4947223 4947223 G A UHRF1 Intron 0.81 TCGA-85-8070-01 19 55048314 55048314 G T KIR3DX1 Missense_Mutation p.R294I 0.88 deleterious(0.01) probably_damaging(1) TCGA-85-8070-01 19 55420878 55420878 C A NCR1 Silent p.V210V 0.76 TCGA-85-8070-01 19 5831638 5831638 C T FUT6 Missense_Mutation p.R314H 0.70 deleterious(0.03) benign(0.187) TCGA-85-8070-01 19 58570669 58570669 A C ZNF135 Silent p.A20A 0.89 TCGA-85-8070-01 19 7964793 7964793 G C LRRC8E Missense_Mutation p.L462F 0.92 deleterious(0) probably_damaging(0.994) TCGA-85-8070-01 19 7964794 7964794 C G LRRC8E Missense_Mutation p.Q463E 0.88 tolerated(0.11) benign(0.002) TCGA-85-8070-01 19 7976161 7976162 - ACCA MAP2K7 Frame_Shift_Ins p.K296Nfs*6 0.70 TCGA-85-8070-01 1 103573692 103573692 A T COL11A1 Missense_Mutation p.W15R 0.40 benign(0.056) TCGA-85-8070-01 1 12169627 12169627 G T TNFRSF8 Silent p.T142T 0.82 TCGA-85-8070-01 1 149906411 149906411 C A MTMR11 Missense_Mutation p.M159I 0.50 tolerated(0.21) benign(0.001) TCGA-85-8070-01 1 152276857 152276857 G T FLG Nonsense_Mutation p.S3502* 0.03 TCGA-85-8070-01 1 152659453 152659453 C T LCE2B Missense_Mutation p.S45F 0.41 tolerated_low_confidence(0.18) unknown(0) TCGA-85-8070-01 1 156617809 156617809 G A BCAN Missense_Mutation p.G226R 0.45 deleterious(0) probably_damaging(1) TCGA-85-8070-01 1 160460005 160460005 T C SLAMF6 Missense_Mutation p.Q260R 0.09 tolerated(0.16) possibly_damaging(0.578) TCGA-85-8070-01 1 166958582 166958582 G T MAEL 5'UTR 0.36 TCGA-85-8070-01 1 185154028 185154028 G T SWT1 Missense_Mutation p.W465L 0.41 deleterious(0.01) probably_damaging(1) TCGA-85-8070-01 1 186308776 186308776 T C TPR Silent p.A1383A 0.10 TCGA-85-8070-01 1 196438122 196438122 A C KCNT2 Splice_Site p.X153_splice 0.18 TCGA-85-8070-01 1 209799176 209799176 C A LAMB3 Missense_Mutation p.R598L 0.55 deleterious(0.01) possibly_damaging(0.872) TCGA-85-8070-01 1 227216579 227216579 C G CDC42BPA Missense_Mutation p.R1369T 0.23 tolerated(0.13) benign(0.053) TCGA-85-8070-01 1 2288895 2288895 C A MORN1 Nonsense_Mutation p.E338* 0.87 TCGA-85-8070-01 1 247694839 247694839 G T OR2C3 3'UTR 0.38 TCGA-85-8070-01 1 248112606 248112606 C A OR2L8 Silent p.I149I 0.50 TCGA-85-8070-01 1 248487018 248487018 G T OR2M7 Missense_Mutation p.L285M 0.30 deleterious(0.03) possibly_damaging(0.573) TCGA-85-8070-01 1 26142217 26142217 G A SEPN1 3'UTR 0.45 TCGA-85-8070-01 1 27876654 27876654 A C AHDC1 Missense_Mutation p.F658C 0.62 deleterious(0) possibly_damaging(0.878) TCGA-85-8070-01 1 42744253 42744253 T A FOXJ3 Silent p.T45T 0.45 TCGA-85-8070-01 1 60305979 60305979 G A HOOK1 Splice_Site p.X180_splice 0.50 TCGA-85-8070-01 1 68962737 68962737 G A DEPDC1 5'UTR 0.49 TCGA-85-8070-01 1 75188890 75188890 T C CRYZ Missense_Mutation p.Y59C 0.45 deleterious(0) possibly_damaging(0.841) TCGA-85-8070-01 20 19665960 19665960 G C SLC24A3 Missense_Mutation p.D427H 0.49 tolerated(0.1) benign(0.401) TCGA-85-8070-01 20 21492616 21492616 G T NKX2-2 Missense_Mutation p.T256N 0.32 tolerated(0.7) benign(0) TCGA-85-8070-01 20 29956449 29956449 G A DEFB118 5'UTR 0.58 TCGA-85-8070-01 20 29956450 29956450 G T DEFB118 5'UTR 0.57 TCGA-85-8070-01 20 30585287 30585287 C T XKR7 3'UTR 0.36 TCGA-85-8070-01 20 30897858 30897858 T A KIF3B Missense_Mutation p.F93Y 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-85-8070-01 20 31893807 31893807 G T BPIFB1 Splice_Site p.X419_splice 0.49 TCGA-85-8070-01 20 3782379 3782379 C T CDC25B Missense_Mutation p.A284V 0.44 tolerated(0.19) benign(0.008) TCGA-85-8070-01 20 47706080 47706080 A T CSE1L Missense_Mutation p.I660F 0.35 tolerated(0.13) benign(0.367) TCGA-85-8070-01 20 50803490 50803490 A T ZFP64 Missense_Mutation p.L56Q 0.54 tolerated(0.05) probably_damaging(0.998) TCGA-85-8070-01 20 56093806 56093806 G T CTCFL Intron 0.28 TCGA-85-8070-01 21 10969100 10969100 C A TPTE Missense_Mutation p.A50S 0.28 tolerated(0.79) benign(0.038) TCGA-85-8070-01 21 19653532 19653532 G C TMPRSS15 Missense_Mutation p.N831K 0.25 deleterious(0.01) possibly_damaging(0.501) TCGA-85-8070-01 21 30953745 30953746 - T GRIK1 Frame_Shift_Ins p.G638Rfs*51 0.49 TCGA-85-8070-01 21 38862750 38862750 A T DYRK1A Missense_Mutation p.Q313L 0.85 tolerated(0.34) possibly_damaging(0.832) TCGA-85-8070-01 22 19966526 19966526 C T ARVCF Missense_Mutation p.E492K 0.05 deleterious(0.01) possibly_damaging(0.729) TCGA-85-8070-01 22 20073637 20073637 G T DGCR8 Missense_Mutation p.V51F 0.35 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-85-8070-01 22 20819812 20819812 C T KLHL22 Missense_Mutation p.E149K 0.44 tolerated(0.8) benign(0.194) TCGA-85-8070-01 22 31333874 31333874 C A MORC2 Missense_Mutation p.A371S 0.39 deleterious(0.03) probably_damaging(0.999) TCGA-85-8070-01 22 35743199 35743199 A T TOM1 Missense_Mutation p.L493F 0.48 deleterious(0) probably_damaging(1) TCGA-85-8070-01 22 38245531 38245531 G C EIF3L Intron 0.15 TCGA-85-8070-01 22 51137162 51137162 G - SHANK3 Frame_Shift_Del p.G531Afs*16 0.29 TCGA-85-8070-01 2 10566855 10566855 C A HPCAL1 Missense_Mutation p.L164M 0.33 deleterious(0) possibly_damaging(0.905) TCGA-85-8070-01 2 10566856 10566856 T G HPCAL1 Missense_Mutation p.L164R 0.33 deleterious(0) possibly_damaging(0.831) TCGA-85-8070-01 2 119727713 119727713 C T MARCO Missense_Mutation p.R75W 0.40 tolerated(0.09) benign(0.004) TCGA-85-8070-01 2 125660560 125660560 G A CNTNAP5 Missense_Mutation p.A1179T 0.33 deleterious(0) probably_damaging(0.999) TCGA-85-8070-01 2 128471358 128471358 C G WDR33 Missense_Mutation p.G1036A 0.43 deleterious_low_confidence(0.03) probably_damaging(0.981) TCGA-85-8070-01 2 132010578 132010578 G T POTEE Missense_Mutation p.A562S 0.21 deleterious_low_confidence(0) benign(0.364) TCGA-85-8070-01 2 141777516 141777516 C A LRP1B Nonsense_Mutation p.G649* 0.62 TCGA-85-8070-01 2 155307085 155307085 G A GALNT13 3'UTR 0.38 TCGA-85-8070-01 2 155566184 155566184 G T KCNJ3 Missense_Mutation p.G258W 0.32 deleterious(0) probably_damaging(1) TCGA-85-8070-01 2 164466191 164466191 C T FIGN Missense_Mutation p.M717I 0.39 tolerated(0.51) benign(0.006) TCGA-85-8070-01 2 169684984 169684984 A G NOSTRIN Silent p.L105L 0.52 TCGA-85-8070-01 2 169764483 169764483 A G G6PC2 Missense_Mutation p.Y321C 0.10 deleterious(0.01) benign(0.093) TCGA-85-8070-01 2 179457618 179457618 T G TTN Missense_Mutation p.K19743T 0.54 TCGA-85-8070-01 2 179499463 179499463 A T TTN Silent p.I14046I 0.44 TCGA-85-8070-01 2 201460018 201460018 G T AOX1 Missense_Mutation p.G43C 0.45 deleterious(0) probably_damaging(0.999) TCGA-85-8070-01 2 207989102 207989102 T C KLF7 Silent p.L43L 0.61 TCGA-85-8070-01 2 209049755 209049755 C T C2orf80 Missense_Mutation p.G15R 0.34 deleterious(0.02) benign(0.191) TCGA-85-8070-01 2 215279267 215279267 A T VWC2L Missense_Mutation p.E117V 0.50 tolerated(0.12) possibly_damaging(0.648) TCGA-85-8070-01 2 223918082 223918082 G A KCNE4 3'UTR 0.58 TCGA-85-8070-01 2 224642481 224642481 G C AP1S3 Missense_Mutation p.Q37E 0.45 tolerated(0.1) benign(0.013) TCGA-85-8070-01 2 236839534 236839534 G T AGAP1 Missense_Mutation p.A484S 0.33 tolerated(0.24) benign(0.122) TCGA-85-8070-01 2 48026644 48026644 G C MSH6 Missense_Mutation p.V508L 0.11 deleterious(0) probably_damaging(0.996) TCGA-85-8070-01 2 49190739 49190739 A T FSHR Silent p.A407A 0.09 TCGA-85-8070-01 2 71043334 71043334 T A CLEC4F Silent p.L393L 0.28 TCGA-85-8070-01 2 71828646 71828646 T C DYSF Silent p.I1305I 0.25 TCGA-85-8070-01 2 73718455 73718455 G T ALMS1 Silent p.L3122L 0.18 TCGA-85-8070-01 2 73718456 73718456 G T ALMS1 Missense_Mutation p.D3123Y 0.18 probably_damaging(1) TCGA-85-8070-01 2 79313531 79313531 C A REG1B Missense_Mutation p.D95Y 0.27 tolerated(1) probably_damaging(0.992) TCGA-85-8070-01 2 90199079 90199079 C A IGKV1D-12 Silent p.V80V 0.26 TCGA-85-8070-01 2 90199080 90199080 C A IGKV1D-12 Missense_Mutation p.P81T 0.26 deleterious(0.02) possibly_damaging(0.584) TCGA-85-8070-01 2 90249393 90249393 C A IGKV1D-43 Missense_Mutation p.P117T 0.21 deleterious(0) probably_damaging(1) TCGA-85-8070-01 2 90249394 90249394 C A IGKV1D-43 Missense_Mutation p.P117H 0.21 deleterious(0) probably_damaging(1) TCGA-85-8070-01 2 99811311 99811311 G A MRPL30 Missense_Mutation p.R77K 0.25 tolerated(0.61) possibly_damaging(0.799) TCGA-85-8070-01 3 100170536 100170536 G A LNP1 Intron 0.38 TCGA-85-8070-01 3 113138953 113138953 C A WDR52 Missense_Mutation p.A161S 0.07 deleterious(0) benign(0.26) TCGA-85-8070-01 3 121415574 121415574 G T GOLGB1 Missense_Mutation p.P1266T 0.36 benign(0.131) TCGA-85-8070-01 3 138738979 138738979 G A PRR23B Silent p.A175A 0.04 TCGA-85-8070-01 3 140407264 140407264 C A TRIM42 Missense_Mutation p.D580E 0.28 tolerated(1) benign(0) TCGA-85-8070-01 3 142681976 142681976 C G PAQR9 Missense_Mutation p.C68S 0.63 tolerated(0.63) benign(0) TCGA-85-8070-01 3 148768152 148768152 C A HLTF Missense_Mutation p.G495V 0.54 deleterious(0.01) probably_damaging(0.974) TCGA-85-8070-01 3 157920956 157920956 G T RSRC1 Missense_Mutation p.R139L 0.31 deleterious_low_confidence(0.01) unknown(0) TCGA-85-8070-01 3 183369006 183369006 G A KLHL24 Missense_Mutation p.A288T 0.48 tolerated(0.06) probably_damaging(1) TCGA-85-8070-01 3 37033395 37033395 G C EPM2AIP1 Missense_Mutation p.R392G 0.09 tolerated(0.68) benign(0) TCGA-85-8070-01 3 54959244 54959244 T C LRTM1 Splice_Site p.X3_splice 0.12 TCGA-85-8070-01 3 88104786 88104786 G C CGGBP1 Missense_Mutation p.A114G 0.17 deleterious(0.01) possibly_damaging(0.811) TCGA-85-8070-01 4 103188829 103188829 C G SLC39A8 Missense_Mutation p.D351H 0.47 deleterious(0.03) probably_damaging(1) TCGA-85-8070-01 4 113502906 113502906 T C C4orf21 Missense_Mutation p.T1451A 0.52 tolerated(0.15) benign(0.015) TCGA-85-8070-01 4 118006543 118006543 G T TRAM1L1 Missense_Mutation p.L3I 0.67 tolerated(0.78) benign(0.003) TCGA-85-8070-01 4 126398322 126398322 T A FAT4 Silent p.V4102V 0.88 TCGA-85-8070-01 4 134073632 134073632 G A PCDH10 Silent p.K779K 0.27 TCGA-85-8070-01 4 134084426 134084426 C A PCDH10 Missense_Mutation p.P1031Q 0.80 deleterious_low_confidence(0) possibly_damaging(0.823) TCGA-85-8070-01 4 173852321 173852321 T A GALNTL6 Missense_Mutation p.C351S 0.80 deleterious(0) probably_damaging(1) TCGA-85-8070-01 4 20600019 20600019 G T SLIT2 Splice_Site p.X1231_splice 0.41 TCGA-85-8070-01 4 46099279 46099279 G C GABRG1 Missense_Mutation p.I64M 0.45 deleterious(0.01) possibly_damaging(0.603) TCGA-85-8070-01 4 47939398 47939398 C T CNGA1 Silent p.R440R 0.40 TCGA-85-8070-01 4 56820531 56820531 G T CEP135 Missense_Mutation p.A152S 0.47 deleterious(0) probably_damaging(0.988) TCGA-85-8070-01 4 7770732 7770732 G T AFAP1 Missense_Mutation p.P753T 0.85 deleterious(0.02) benign(0.253) TCGA-85-8070-01 5 110836715 110836715 C G STARD4 Missense_Mutation p.G128R 0.17 deleterious(0) probably_damaging(1) TCGA-85-8070-01 5 13737599 13737599 C G DNAH5 Missense_Mutation p.L3739F 0.29 possibly_damaging(0.849) TCGA-85-8070-01 5 147029982 147029982 C A JAKMIP2 Missense_Mutation p.K252N 0.85 deleterious(0) benign(0.329) TCGA-85-8070-01 5 158701632 158701632 T G UBLCP1 Splice_Site p.X195_splice 0.83 TCGA-85-8070-01 5 16769310 16769310 C A MYO10 Silent p.T311T 0.51 TCGA-85-8070-01 5 179555421 179555421 G A RASGEF1C Missense_Mutation p.H210Y 0.92 deleterious(0.03) benign(0.215) TCGA-85-8070-01 5 19839019 19839019 G C CDH18 Missense_Mutation p.A26G 0.23 tolerated(0.41) benign(0) TCGA-85-8070-01 5 31317961 31317961 G T CDH6 Silent p.A604A 0.66 TCGA-85-8070-01 5 33561161 33561161 C G ADAMTS12 Missense_Mutation p.A1366P 0.23 deleterious(0.03) probably_damaging(0.949) TCGA-85-8070-01 5 38406281 38406281 G A EGFLAM Missense_Mutation p.G256R 0.22 tolerated_low_confidence(0.31) benign(0.005) TCGA-85-8070-01 5 40716573 40716573 G A TTC33 Missense_Mutation p.H155Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-85-8070-01 5 43446499 43446499 C A C5orf28 Missense_Mutation p.R158L 0.11 deleterious(0) probably_damaging(1) TCGA-85-8070-01 6 11190440 11190440 C T NEDD9 Silent p.E554E 0.11 TCGA-85-8070-01 6 132179852 132179852 A G ENPP1 Missense_Mutation p.T254A 0.21 deleterious(0) possibly_damaging(0.859) TCGA-85-8070-01 6 143093607 143093607 G A HIVEP2 Missense_Mutation p.R757C 0.67 deleterious(0.02) possibly_damaging(0.855) TCGA-85-8070-01 6 152454450 152454450 C A SYNE1 Missense_Mutation p.K8654N 0.29 probably_damaging(0.914) TCGA-85-8070-01 6 27775682 27775682 C T HIST1H2BL Translation_Start_Site p.M1? 0.81 deleterious_low_confidence(0.04) probably_damaging(0.958) TCGA-85-8070-01 6 29079954 29079954 C G OR2J3 Missense_Mutation p.S96C 0.29 deleterious(0) probably_damaging(0.994) TCGA-85-8070-01 6 29365369 29365369 G T OR12D2 Missense_Mutation p.G298V 0.91 tolerated(0.35) benign(0.004) TCGA-85-8070-01 6 66205100 66205100 A C EYS Silent p.T68T 0.19 TCGA-85-8070-01 6 69349298 69349298 G T BAI3 Missense_Mutation p.R244M 0.59 tolerated(0.07) benign(0.084) TCGA-85-8070-01 6 69665927 69665927 T C BAI3 Missense_Mutation p.W403R 0.46 deleterious(0) probably_damaging(0.996) TCGA-85-8070-01 6 89322398 89322398 C A RNGTT 3'UTR 0.22 TCGA-85-8070-01 6 90577453 90577453 T G CASP8AP2 RNA 0.60 TCGA-85-8070-01 7 100773786 100773786 C T SERPINE1 Missense_Mutation p.A119V 0.05 deleterious(0.02) probably_damaging(0.997) TCGA-85-8070-01 7 107303847 107303847 G A SLC26A4 Missense_Mutation p.G91R 0.18 deleterious(0) probably_damaging(1) TCGA-85-8070-01 7 107600261 107600261 T C LAMB1 Missense_Mutation p.Q778R 0.73 deleterious(0.03) possibly_damaging(0.734) TCGA-85-8070-01 7 110763023 110763023 C A LRRN3 Silent p.A65A 0.22 TCGA-85-8070-01 7 114268605 114268605 C T FOXP2 Missense_Mutation p.S115L 0.25 deleterious(0) probably_damaging(0.996) TCGA-85-8070-01 7 122131441 122131441 T C CADPS2 Missense_Mutation p.R526G 0.69 tolerated(0.05) possibly_damaging(0.904) TCGA-85-8070-01 7 123276997 123276997 G C ASB15 Missense_Mutation p.E577Q 0.10 deleterious(0) probably_damaging(0.964) TCGA-85-8070-01 7 127670660 127670660 G A LRRC4 Missense_Mutation p.H12Y 0.23 tolerated_low_confidence(0.95) benign(0.062) TCGA-85-8070-01 7 128481313 128481313 C A FLNC Missense_Mutation p.P635T 0.66 deleterious(0) possibly_damaging(0.794) TCGA-85-8070-01 7 131912340 131912340 G A PLXNA4 Silent p.V584V 0.31 TCGA-85-8070-01 7 137330240 137330240 C G DGKI Missense_Mutation p.G261A 0.27 deleterious(0) probably_damaging(0.993) TCGA-85-8070-01 7 140373759 140373759 G T ADCK2 Missense_Mutation p.C210F 0.61 deleterious(0) probably_damaging(0.999) TCGA-85-8070-01 7 143096420 143096420 C T EPHA1 Missense_Mutation p.A308T 0.69 tolerated(0.06) benign(0.013) TCGA-85-8070-01 7 143175270 143175270 G - TAS2R41 Frame_Shift_Del p.W102Cfs*8 0.45 TCGA-85-8070-01 7 146805325 146805325 G A CNTNAP2 Missense_Mutation p.A213T 0.28 deleterious(0.04) benign(0.001) TCGA-85-8070-01 7 15405146 15405146 G T AGMO Missense_Mutation p.A419D 1.00 deleterious(0.05) benign(0.13) TCGA-85-8070-01 7 17379766 17379766 C G AHR Missense_Mutation p.Q773E 0.57 deleterious_low_confidence(0.02) benign(0.196) TCGA-85-8070-01 7 18788676 18788676 A T HDAC9 Missense_Mutation p.N653I 0.85 deleterious(0) possibly_damaging(0.466) TCGA-85-8070-01 7 27213766 27213766 C A HOXA10 Missense_Mutation p.G54C 0.77 deleterious(0.01) possibly_damaging(0.48) TCGA-85-8070-01 7 34094783 34094783 T A BMPER Silent p.T265T 0.87 TCGA-85-8070-01 7 72178707 72178707 C A TYW1B Missense_Mutation p.K40N 0.26 deleterious(0) probably_damaging(0.965) TCGA-85-8070-01 7 82763740 82763740 C T PCLO Silent p.K1042K 0.26 TCGA-85-8070-01 7 93116259 93116259 A T CALCR Missense_Mutation p.L30Q 0.20 deleterious(0) probably_damaging(0.937) TCGA-85-8070-01 8 110567087 110567087 A T EBAG9 Missense_Mutation p.M98L 0.58 tolerated(0.08) benign(0.175) TCGA-85-8070-01 8 126023813 126023813 C T SQLE Silent p.D381D 0.38 TCGA-85-8070-01 8 133978802 133978802 C G TG Intron 0.19 TCGA-85-8070-01 8 135649732 135649732 C T ZFAT Silent p.L140L 0.24 TCGA-85-8070-01 8 140715056 140715056 C - KCNK9 Frame_Shift_Del p.Q61Sfs*5 0.18 TCGA-85-8070-01 8 145608358 145608358 C T ADCK5 Missense_Mutation p.R65C 0.40 tolerated(0.16) benign(0.009) TCGA-85-8070-01 8 20110523 20110523 C A LZTS1 Nonsense_Mutation p.E307* 0.74 TCGA-85-8070-01 8 2830636 2830636 C T CSMD1 Intron 0.14 TCGA-85-8070-01 8 35583749 35583749 G T UNC5D Missense_Mutation p.Q461H 0.63 tolerated(0.43) benign(0.051) TCGA-85-8070-01 8 35616989 35616989 T A UNC5D Splice_Site p.X771_splice 0.69 TCGA-85-8070-01 8 41399389 41399389 A G GINS4 Missense_Mutation p.I182M 0.54 deleterious(0) benign(0.299) TCGA-85-8070-01 8 51442738 51442738 T A SNTG1 Nonsense_Mutation p.C156* 0.41 TCGA-85-8070-01 8 52284486 52284486 T A PXDNL Missense_Mutation p.N1283I 0.45 deleterious(0.02) benign(0.042) TCGA-85-8070-01 8 72987682 72987682 C A TRPA1 5'UTR 0.61 TCGA-85-8070-01 8 72987683 72987683 C T TRPA1 5'UTR 0.64 TCGA-85-8070-01 8 77619972 77619972 C A ZFHX4 Missense_Mutation p.R928S 0.27 possibly_damaging(0.555) TCGA-85-8070-01 8 87111214 87111214 G C ATP6V0D2 Missense_Mutation p.E3Q 0.29 deleterious(0.01) benign(0.107) TCGA-85-8070-01 8 88885128 88885128 C T DCAF4L2 Missense_Mutation p.A358T 0.49 tolerated(0.63) benign(0.029) TCGA-85-8070-01 8 89180041 89180041 G T MMP16 Missense_Mutation p.A189E 0.47 deleterious(0) probably_damaging(1) TCGA-85-8070-01 8 99057589 99057591 CCA - RPL30 In_Frame_Del p.V2del 0.55 TCGA-85-8070-01 9 101748007 101748007 C A COL15A1 Missense_Mutation p.F87L 0.53 deleterious(0) possibly_damaging(0.686) TCGA-85-8070-01 9 131588714 131588714 T C C9orf114 Splice_Site p.X153_splice 0.46 TCGA-85-8070-01 9 140508832 140508832 C A ARRDC1 Silent p.R234R 0.08 TCGA-85-8070-01 9 19376265 19376265 C G RPS6 3'UTR 0.96 TCGA-85-8070-01 9 37744590 37744590 T - FRMPD1 Frame_Shift_Del p.L854Rfs*10 0.53 TCGA-85-8070-01 9 84605786 84605786 A G SPATA31D1 Missense_Mutation p.K134R 0.40 deleterious(0) benign(0.075) TCGA-85-8070-01 9 97216338 97216338 T A HIATL1 Missense_Mutation p.F338L 0.14 tolerated(0.24) benign(0.009) TCGA-85-8070-01 X 105152890 105152890 G T NRK Silent p.L420L 0.94 TCGA-85-8070-01 X 113965930 113965930 C A HTR2C Missense_Mutation p.T88N 0.94 deleterious(0) probably_damaging(0.999) TCGA-85-8070-01 X 141291757 141291757 C A MAGEC2 Missense_Mutation p.G6V 0.95 tolerated_low_confidence(0.05) benign(0.124) TCGA-85-8070-01 X 147744260 147744260 C - AFF2 Frame_Shift_Del p.P338Qfs*11 0.50 TCGA-85-8070-01 X 149100936 149100936 G C CXorf40B Silent p.P101P 0.11 TCGA-85-8070-01 X 48772453 48772453 C T PIM2 Missense_Mutation p.V147I 0.06 tolerated(0.18) benign(0.053) TCGA-85-8070-01 X 65420462 65420462 C A HEPH Missense_Mutation p.L703M 0.89 tolerated(0.16) probably_damaging(0.992) TCGA-85-8071-01 10 102057360 102057360 C A PKD2L1 Missense_Mutation p.W245C 0.31 deleterious(0) probably_damaging(1) TCGA-85-8071-01 10 104849667 104849667 T A NT5C2 Splice_Site p.X484_splice 0.26 TCGA-85-8071-01 10 119013878 119013878 C T SLC18A2 Intron 0.22 TCGA-85-8071-01 10 124351970 124351970 C A DMBT1 Silent p.R787R 0.78 TCGA-85-8071-01 10 129901184 129901184 C A MKI67 Missense_Mutation p.V2974L 0.40 tolerated(1) benign(0) TCGA-85-8071-01 10 134898535 134898535 G T GPR123 5'Flank 0.48 TCGA-85-8071-01 10 18837167 18837167 C A NSUN6 Splice_Site p.X358_splice 0.89 TCGA-85-8071-01 10 46122075 46122075 C A ZFAND4 Missense_Mutation p.G399V 0.46 deleterious(0.03) possibly_damaging(0.721) TCGA-85-8071-01 10 52610550 52610550 A G A1CF 5'UTR 0.34 TCGA-85-8071-01 10 55566718 55566718 C A PCDH15 Missense_Mutation p.R1556L 0.27 deleterious_low_confidence(0) benign(0.334) TCGA-85-8071-01 10 63170270 63170270 A G TMEM26 Missense_Mutation p.V306A 0.27 tolerated(0.1) benign(0.036) TCGA-85-8071-01 10 63958029 63958029 C A RTKN2 Missense_Mutation p.A490S 0.30 tolerated(0.56) benign(0.003) TCGA-85-8071-01 10 71266765 71266765 G T TSPAN15 3'UTR 0.56 TCGA-85-8071-01 10 93811973 93811973 C A CPEB3 Missense_Mutation p.S698I 0.19 deleterious_low_confidence(0) possibly_damaging(0.616) TCGA-85-8071-01 10 95400711 95400711 A G PDE6C Missense_Mutation p.E591G 0.37 deleterious(0) probably_damaging(0.955) TCGA-85-8071-01 10 98240120 98240120 G T TLL2 Missense_Mutation p.T91K 0.39 tolerated_low_confidence(0.9) benign(0.01) TCGA-85-8071-01 11 103027155 103027155 A C DYNC2H1 Missense_Mutation p.R1261S 0.68 probably_damaging(0.998) TCGA-85-8071-01 11 103060519 103060519 G T DYNC2H1 Nonsense_Mutation p.G2471* 0.76 TCGA-85-8071-01 11 117387220 117387220 T A DSCAML1 Missense_Mutation p.Q642L 0.77 tolerated(0.07) possibly_damaging(0.617) TCGA-85-8071-01 11 120776141 120776141 T A GRIK4 Missense_Mutation p.V472E 0.68 tolerated(0.58) benign(0.265) TCGA-85-8071-01 11 120776159 120776159 C A GRIK4 Missense_Mutation p.A478D 0.67 tolerated(0.79) benign(0.217) TCGA-85-8071-01 11 124179934 124179934 A G OR8D1 Silent p.S243S 0.58 TCGA-85-8071-01 11 14491022 14491022 C T COPB1 Missense_Mutation p.D609N 0.40 deleterious(0.04) possibly_damaging(0.821) TCGA-85-8071-01 11 1464737 1464737 G A BRSK2 Missense_Mutation p.D264N 0.43 deleterious(0) possibly_damaging(0.822) TCGA-85-8071-01 11 22225377 22225377 A T ANO5 Missense_Mutation p.Y23F 0.48 tolerated(0.65) benign(0.016) TCGA-85-8071-01 11 22257761 22257761 G C ANO5 Missense_Mutation p.R234T 0.12 deleterious(0) benign(0.149) TCGA-85-8071-01 11 22391705 22391705 G T SLC17A6 Nonsense_Mutation p.E338* 0.55 TCGA-85-8071-01 11 30033371 30033371 G T KCNA4 Silent p.P285P 0.35 TCGA-85-8071-01 11 30925214 30925214 G T DCDC1 Missense_Mutation p.T1442K 0.50 deleterious(0.01) possibly_damaging(0.742) TCGA-85-8071-01 11 3122832 3122832 C A OSBPL5 Splice_Site p.X508_splice 0.43 TCGA-85-8071-01 11 4407423 4407423 C A TRIM21 Missense_Mutation p.V275L 0.40 tolerated(0.09) possibly_damaging(0.853) TCGA-85-8071-01 11 45924932 45924932 G T MAPK8IP1 Silent p.G478G 0.34 TCGA-85-8071-01 11 4935980 4935980 C A OR51G2 Missense_Mutation p.R305L 0.36 deleterious(0) possibly_damaging(0.87) TCGA-85-8071-01 11 5443455 5443455 C G OR51Q1 Missense_Mutation p.Q9E 0.37 tolerated(1) benign(0.005) TCGA-85-8071-01 11 55038442 55038442 G T TRIM48 3'UTR 0.93 TCGA-85-8071-01 11 55065368 55065368 G A TRIM51HP RNA 0.31 TCGA-85-8071-01 11 55541499 55541499 A C OR5D13 Missense_Mutation p.I196L 0.55 tolerated(0.39) benign(0.011) TCGA-85-8071-01 11 55579116 55579116 C A OR5L1 Silent p.P58P 0.31 TCGA-85-8071-01 11 55595126 55595126 G A OR5L2 Silent p.L144L 0.33 TCGA-85-8071-01 11 56113543 56113543 C A OR8K1 Missense_Mutation p.T10K 0.27 tolerated_low_confidence(0.08) benign(0.035) TCGA-85-8071-01 11 56128142 56128142 C G OR8J1 Silent p.L140L 0.31 TCGA-85-8071-01 11 5624735 5624735 C A TRIM6 Missense_Mutation p.P93T 0.45 tolerated(0.45) benign(0.159) TCGA-85-8071-01 11 57799054 57799054 G T OR6Q1 Silent p.V210V 0.57 TCGA-85-8071-01 11 58477488 58477488 C T GLYAT Silent p.G214G 0.34 TCGA-85-8071-01 11 5878346 5878346 G T OR52E8 Missense_Mutation p.A196D 0.43 tolerated(0.07) benign(0.119) TCGA-85-8071-01 11 58980162 58980162 C A MPEG1 Missense_Mutation p.M59I 0.16 deleterious(0) benign(0.028) TCGA-85-8071-01 11 58980174 58980174 C A MPEG1 Silent p.R55R 0.18 TCGA-85-8071-01 11 62575104 62575104 G A STX5 Intron 0.30 TCGA-85-8071-01 11 64693304 64693304 G A PPP2R5B Missense_Mutation p.R33H 0.30 tolerated(0.12) probably_damaging(0.964) TCGA-85-8071-01 11 66138753 66138753 T A SLC29A2 Missense_Mutation p.T25S 0.41 deleterious(0.01) probably_damaging(0.996) TCGA-85-8071-01 11 66444452 66444452 G A RBM4B Silent p.I33I 0.30 TCGA-85-8071-01 11 6644500 6644500 C G DCHS1 Missense_Mutation p.V2803L 0.43 deleterious(0.01) benign(0.253) TCGA-85-8071-01 11 6648037 6648037 C A DCHS1 Missense_Mutation p.R2078L 0.41 tolerated(0.12) benign(0.421) TCGA-85-8071-01 11 67818128 67818128 A T TCIRG1 Missense_Mutation p.H804L 0.46 deleterious(0) probably_damaging(0.939) TCGA-85-8071-01 11 7083601 7083601 G T NLRP14 Missense_Mutation p.D948Y 0.31 tolerated(0.1) probably_damaging(0.977) TCGA-85-8071-01 11 73681188 73681188 G C DNAJB13 3'UTR 0.58 TCGA-85-8071-01 11 799561 799561 C A PIDD Missense_Mutation p.D827Y 0.48 deleterious(0) probably_damaging(1) TCGA-85-8071-01 11 89403624 89403624 C T FOLH1B RNA 0.50 TCGA-85-8071-01 11 92532604 92532604 A G FAT3 Missense_Mutation p.K2142R 0.21 benign(0.077) TCGA-85-8071-01 12 109865387 109865387 C G MYO1H Missense_Mutation p.Q633E 0.30 tolerated(0.29) benign(0.027) TCGA-85-8071-01 12 11461398 11461398 G T PRB4 Silent p.S173S 0.42 TCGA-85-8071-01 12 11461519 11461519 C A PRB4 Missense_Mutation p.R133L 0.35 tolerated_low_confidence(0.1) unknown(0) TCGA-85-8071-01 12 129431930 129431930 A T GLT1D1 Missense_Mutation p.H156L 0.40 deleterious(0) benign(0.402) TCGA-85-8071-01 12 131439199 131439199 C G GPR133 Missense_Mutation p.H33D 0.29 deleterious_low_confidence(0.01) benign(0.197) TCGA-85-8071-01 12 1943687 1943687 A G LRTM2 Missense_Mutation p.R305G 0.36 deleterious(0) probably_damaging(0.999) TCGA-85-8071-01 12 20893254 20893254 C T SLCO1C1 Missense_Mutation p.S562F 0.28 tolerated(0.06) possibly_damaging(0.665) TCGA-85-8071-01 12 40153996 40153996 A G SLC2A13 Silent p.C593C 0.20 TCGA-85-8071-01 12 404931 404931 C A KDM5A Silent p.R1421R 0.41 TCGA-85-8071-01 12 4461499 4461499 A C C12orf5 Missense_Mutation p.Q152P 0.48 tolerated(0.15) benign(0.005) TCGA-85-8071-01 12 45796949 45796949 A T ANO6 Silent p.I590I 0.49 TCGA-85-8071-01 12 49437666 49437667 - A KMT2D Frame_Shift_Ins p.A1770Cfs*18 0.30 TCGA-85-8071-01 12 49444700 49444700 C T KMT2D Silent p.E922E 0.23 TCGA-85-8071-01 12 49890633 49890633 G A SPATS2 Missense_Mutation p.G182S 0.45 tolerated(0.22) probably_damaging(0.936) TCGA-85-8071-01 12 51865099 51865099 C T SLC4A8 Nonsense_Mutation p.R563* 0.37 TCGA-85-8071-01 12 53691846 53691846 G A PFDN5 Silent p.K100K 0.35 TCGA-85-8071-01 12 54686878 54686878 C G NFE2 Silent p.G134G 0.45 TCGA-85-8071-01 12 54917691 54917691 A G NCKAP1L Missense_Mutation p.I703V 0.41 tolerated(0.32) benign(0.002) TCGA-85-8071-01 12 5603989 5603989 C A NTF3 Missense_Mutation p.N216K 0.43 deleterious(0.04) probably_damaging(0.985) TCGA-85-8071-01 12 58020609 58020609 G A B4GALNT1 Missense_Mutation p.P507L 0.38 deleterious(0.04) possibly_damaging(0.889) TCGA-85-8071-01 12 7090287 7090294 CCAGCAGG - LPCAT3 Frame_Shift_Del p.L184Sfs*32 0.24 TCGA-85-8071-01 12 71139613 71139613 A G PTPRR Missense_Mutation p.I331T 0.39 tolerated(0.07) benign(0.066) TCGA-85-8071-01 12 82147826 82147826 C A PPFIA2 Missense_Mutation p.A59S 0.42 tolerated(0.17) benign(0.006) TCGA-85-8071-01 12 91572247 91572247 A T DCN Missense_Mutation p.M28K 0.39 deleterious(0.01) possibly_damaging(0.453) TCGA-85-8071-01 12 95228746 95228746 G C MIR492 3'Flank 0.42 TCGA-85-8071-01 12 99194836 99194836 A G ANKS1B Missense_Mutation p.V1045A 0.31 deleterious(0.04) possibly_damaging(0.866) TCGA-85-8071-01 13 32527346 32527346 G T EEF1DP3 RNA 0.90 TCGA-85-8071-01 13 46539417 46539417 G A ZC3H13 Missense_Mutation p.P1491L 0.71 unknown(0) TCGA-85-8071-01 13 47469742 47469742 G T HTR2A Silent p.S100S 0.71 TCGA-85-8071-01 13 52972183 52972183 T A THSD1 Missense_Mutation p.N69Y 0.62 deleterious(0) probably_damaging(0.987) TCGA-85-8071-01 13 70281828 70281828 C A KLHL1 Missense_Mutation p.G706C 0.72 deleterious(0) probably_damaging(1) TCGA-85-8071-01 13 99853158 99853158 G A UBAC2 5'UTR 0.24 TCGA-85-8071-01 14 103806845 103806845 G A EIF5 Missense_Mutation p.A385T 0.19 deleterious(0) probably_damaging(0.998) TCGA-85-8071-01 14 105409719 105409719 A G AHNAK2 Silent p.A4023A 0.12 TCGA-85-8071-01 14 105409730 105409730 G A AHNAK2 Missense_Mutation p.P4020S 0.14 benign(0.343) TCGA-85-8071-01 14 105412943 105412943 C T AHNAK2 Missense_Mutation p.E2949K 0.07 benign(0.001) TCGA-85-8071-01 14 105418655 105418655 C T AHNAK2 Missense_Mutation p.D1045N 0.08 possibly_damaging(0.719) TCGA-85-8071-01 14 106405925 106405925 C A IGHV6-1 Splice_Site p.X17_splice 0.23 TCGA-85-8071-01 14 106733358 106733358 T A IGHV1-24 Missense_Mutation p.Y46F 0.20 tolerated(0.14) benign(0.324) TCGA-85-8071-01 14 106815933 106815933 G T IGHV3-33 Missense_Mutation p.T47N 0.57 deleterious_low_confidence(0.04) benign(0.03) TCGA-85-8071-01 14 20296192 20296192 G A OR4N2 Silent p.V195V 0.76 TCGA-85-8071-01 14 24806400 24806400 T G RIPK3 Silent p.S389S 0.70 TCGA-85-8071-01 14 44973898 44973898 C T FSCB Missense_Mutation p.V765M 0.90 tolerated(0.06) unknown(0) TCGA-85-8071-01 14 44975908 44975908 C A FSCB Nonsense_Mutation p.E95* 0.86 TCGA-85-8071-01 14 47389242 47389242 A T MDGA2 Silent p.I737I 0.81 TCGA-85-8071-01 14 50092377 50092377 A G DNAAF2 Silent p.P799P 0.73 TCGA-85-8071-01 14 52949537 52949537 C A TXNDC16 Intron 0.82 TCGA-85-8071-01 14 52949538 52949538 A C TXNDC16 Splice_Site p.X418_splice 0.85 TCGA-85-8071-01 14 53513497 53513497 C T DDHD1 Missense_Mutation p.D898N 0.73 deleterious_low_confidence(0) possibly_damaging(0.881) TCGA-85-8071-01 14 60074008 60074008 A T RTN1 Silent p.P656P 0.80 TCGA-85-8071-01 14 79111599 79111599 C A NRXN3 5'UTR 0.77 TCGA-85-8071-01 14 81662573 81662573 T A GTF2A1 Missense_Mutation p.Q164L 0.91 deleterious(0.01) probably_damaging(0.982) TCGA-85-8071-01 14 92474111 92474111 G A TRIP11 Missense_Mutation p.S467L 0.15 tolerated(0.12) benign(0.008) TCGA-85-8071-01 14 93185094 93185094 T G LGMN Missense_Mutation p.E78D 0.24 tolerated(0.33) benign(0.005) TCGA-85-8071-01 14 96134913 96134913 G T TCL6 Intron 0.19 TCGA-85-8071-01 15 20496650 20496650 C T CHEK2P2 RNA 0.05 TCGA-85-8071-01 15 22369284 22369284 A T OR4M2 Missense_Mutation p.R237W 0.16 deleterious(0) probably_damaging(0.952) TCGA-85-8071-01 15 22963765 22963765 G C CYFIP1 Missense_Mutation p.R760T 0.44 deleterious(0) probably_damaging(0.99) TCGA-85-8071-01 15 23889402 23889402 C T MAGEL2 Missense_Mutation p.R560K 0.23 tolerated(0.28) probably_damaging(0.996) TCGA-85-8071-01 15 23890766 23890766 C A MAGEL2 Silent p.L105L 0.50 TCGA-85-8071-01 15 25963492 25963492 G T ATP10A Missense_Mutation p.P473H 0.48 tolerated(0.09) benign(0.014) TCGA-85-8071-01 15 30000777 30000777 T A TJP1 Missense_Mutation p.K1612N 0.49 deleterious_low_confidence(0) benign(0.279) TCGA-85-8071-01 15 32323102 32323102 G A CHRNA7 Silent p.V48V 0.17 TCGA-85-8071-01 15 32928004 32928004 T C ARHGAP11A Silent p.Y457Y 0.40 TCGA-85-8071-01 15 35274486 35274486 T A ZNF770 Missense_Mutation p.T384S 0.29 tolerated(0.27) benign(0.086) TCGA-85-8071-01 15 43258419 43258419 T A UBR1 Missense_Mutation p.Y1508F 0.40 tolerated(1) benign(0.006) TCGA-85-8071-01 15 43622757 43622757 C T LCMT2 5'UTR 0.25 TCGA-85-8071-01 15 75913339 75913339 C T SNUPN Silent p.L18L 0.44 TCGA-85-8071-01 15 75913340 75913340 A C SNUPN Missense_Mutation p.L18R 0.41 tolerated(0.29) possibly_damaging(0.536) TCGA-85-8071-01 15 79748520 79748520 T C KIAA1024 Silent p.L11L 0.19 TCGA-85-8071-01 15 84488591 84488591 G T ADAMTSL3 Missense_Mutation p.R131I 0.43 deleterious(0) probably_damaging(0.996) TCGA-85-8071-01 15 85186914 85186914 C A WDR73 Missense_Mutation p.W308C 0.12 deleterious(0) probably_damaging(0.922) TCGA-85-8071-01 15 89444812 89444812 C A MFGE8 Silent p.A280A 0.22 TCGA-85-8071-01 15 90146076 90146076 C T TICRR Missense_Mutation p.L873F 0.31 tolerated(0.07) possibly_damaging(0.749) TCGA-85-8071-01 15 91009288 91009288 G T IQGAP1 Missense_Mutation p.W611L 0.24 tolerated(0.66) benign(0) TCGA-85-8071-01 15 91009289 91009289 G T IQGAP1 Missense_Mutation p.W611C 0.25 tolerated(0.19) benign(0) TCGA-85-8071-01 16 15839012 15839012 A T MYH11 Missense_Mutation p.W839R 0.85 probably_damaging(0.978) TCGA-85-8071-01 16 24366197 24366197 G T CACNG3 Silent p.T113T 0.40 TCGA-85-8071-01 16 24886996 24886996 A G SLC5A11 Missense_Mutation p.I141V 0.53 deleterious(0.03) possibly_damaging(0.824) TCGA-85-8071-01 16 30484200 30484200 G T ITGAL Silent p.L14L 0.23 TCGA-85-8071-01 16 31484796 31484796 G A TGFB1I1 Silent p.S16S 0.11 TCGA-85-8071-01 16 4564046 4564046 C T CDIP1 Splice_Site p.X29_splice 0.50 TCGA-85-8071-01 16 57241994 57241994 G A RSPRY1 Missense_Mutation p.M125I 0.65 tolerated(0.07) benign(0.196) TCGA-85-8071-01 16 57710131 57710131 G T GPR97 Missense_Mutation p.A76S 0.14 tolerated(0.83) benign(0.001) TCGA-85-8071-01 16 745958 745958 G T FBXL16 Intron 0.24 TCGA-85-8071-01 17 10402289 10402289 A G MYH1 Splice_Site p.X1328_splice 0.62 TCGA-85-8071-01 17 10406517 10406517 T A MYH1 Nonsense_Mutation p.K914* 0.26 TCGA-85-8071-01 17 12642574 12642574 C A MYOCD Missense_Mutation p.H216N 0.36 tolerated(1) benign(0) TCGA-85-8071-01 17 16331677 16331677 T G TRPV2 Missense_Mutation p.I466R 0.39 deleterious(0) possibly_damaging(0.673) TCGA-85-8071-01 17 21319344 21319344 G A KCNJ12 Silent p.A230A 0.20 TCGA-85-8071-01 17 21319575 21319575 C A KCNJ12 Silent p.A307A 0.03 TCGA-85-8071-01 17 32612756 32612756 G T CCL11 5'UTR 0.37 TCGA-85-8071-01 17 35631152 35631152 G A ACACA Missense_Mutation p.R314C 0.42 deleterious(0.02) benign(0.376) TCGA-85-8071-01 17 39296444 39296444 C A KRTAP4-6 Missense_Mutation p.C99F 0.21 deleterious(0) unknown(0) TCGA-85-8071-01 17 41006699 41006699 G A AOC3 Missense_Mutation p.G612E 0.26 deleterious(0) probably_damaging(1) TCGA-85-8071-01 17 41243818 41243818 G T BRCA1 Missense_Mutation p.H1244N 0.31 tolerated(0.41) benign(0.009) TCGA-85-8071-01 17 42030325 42030325 C T PYY Silent p.%3D 0.30 TCGA-85-8071-01 17 42477139 42477139 T G GPATCH8 Missense_Mutation p.K769T 0.50 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-85-8071-01 17 47296912 47296912 C A ABI3 Missense_Mutation p.T158K 0.33 tolerated(0.1) probably_damaging(0.933) TCGA-85-8071-01 17 48156564 48156564 G T ITGA3 Missense_Mutation p.G842V 0.36 tolerated(0.15) possibly_damaging(0.71) TCGA-85-8071-01 17 52993152 52993152 C T TOM1L1 Nonsense_Mutation p.R217* 0.14 TCGA-85-8071-01 17 57816298 57816298 T A VMP1 Missense_Mutation p.L135Q 0.42 deleterious(0) probably_damaging(0.988) TCGA-85-8071-01 17 6380521 6380521 C T PITPNM3 Missense_Mutation p.A305T 0.37 tolerated(0.46) benign(0.003) TCGA-85-8071-01 17 72297224 72297224 G A DNAI2 Missense_Mutation p.E302K 0.42 deleterious(0.03) benign(0.21) TCGA-85-8071-01 17 72368513 72368513 G A GPR142 Missense_Mutation p.R388Q 0.30 tolerated(0.08) benign(0.121) TCGA-85-8071-01 17 7246705 7246705 C A ACAP1 Silent p.R118R 0.35 TCGA-85-8071-01 17 73503713 73503713 C A CASKIN2 Missense_Mutation p.A66S 0.42 tolerated(1) benign(0.007) TCGA-85-8071-01 17 7579312 7579312 C T TP53 Silent p.T125T 0.66 TCGA-85-8071-01 17 76794616 76794616 T - USP36 Frame_Shift_Del p.K1086Nfs*25 0.25 TCGA-85-8071-01 17 76968443 76968443 C T LGALS3BP Missense_Mutation p.V325M 0.10 deleterious(0.01) probably_damaging(0.942) TCGA-85-8071-01 17 7752923 7752923 G A KDM6B Missense_Mutation p.R1106Q 0.12 probably_damaging(0.956) TCGA-85-8071-01 17 78061420 78061420 G T CCDC40 Nonsense_Mutation p.E822* 0.41 TCGA-85-8071-01 17 7948862 7948862 G C ALOX15B Missense_Mutation p.W353S 0.45 deleterious(0) probably_damaging(1) TCGA-85-8071-01 17 79684103 79684103 G T SLC25A10 Splice_Site p.X178_splice 0.51 TCGA-85-8071-01 17 80615957 80615957 G A RAB40B Missense_Mutation p.H207Y 0.44 tolerated_low_confidence(0.62) benign(0.032) TCGA-85-8071-01 17 9808240 9808240 G T RCVRN Nonsense_Mutation p.Y86* 0.37 TCGA-85-8071-01 18 14542926 14542926 C T POTEC Missense_Mutation p.G74R 0.41 tolerated_low_confidence(0.12) probably_damaging(0.953) TCGA-85-8071-01 18 67406338 67406338 G T DOK6 Missense_Mutation p.R246L 0.63 deleterious(0.02) benign(0.042) TCGA-85-8071-01 18 72347589 72347589 C T ZNF407 Silent p.V1538V 0.66 TCGA-85-8071-01 19 14000862 14000862 G A C19orf57 Silent p.P269P 0.33 TCGA-85-8071-01 19 14884768 14884768 G T EMR2 Missense_Mutation p.P61T 0.37 tolerated(0.06) benign(0.16) TCGA-85-8071-01 19 16008314 16008314 G A CYP4F2 Silent p.A36A 0.36 TCGA-85-8071-01 19 1969838 1969838 G C CSNK1G2 Missense_Mutation p.G23R 0.18 deleterious_low_confidence(0.03) possibly_damaging(0.542) TCGA-85-8071-01 19 21558733 21558733 A G ZNF738 Missense_Mutation p.M96V 0.42 tolerated(0.28) benign(0.037) TCGA-85-8071-01 19 22156756 22156756 C A ZNF208 Missense_Mutation p.K360N 0.38 deleterious(0.01) probably_damaging(0.964) TCGA-85-8071-01 19 22271679 22271679 A C ZNF257 Missense_Mutation p.E376A 0.33 deleterious(0) possibly_damaging(0.896) TCGA-85-8071-01 19 2399154 2399154 G A TMPRSS9 Silent p.L125L 0.40 TCGA-85-8071-01 19 33490535 33490535 T A RHPN2 Silent p.T394T 0.12 TCGA-85-8071-01 19 35941612 35941612 G T FFAR2 3'UTR 0.77 TCGA-85-8071-01 19 42222249 42222249 T A CEACAM5 Missense_Mutation p.N480K 0.78 tolerated(0.29) benign(0.278) TCGA-85-8071-01 19 4362354 4362354 C A SH3GL1 Missense_Mutation p.K294N 0.16 tolerated(0.57) benign(0.116) TCGA-85-8071-01 19 51192538 51192538 T A SHANK1 Splice_Site p.X655_splice 0.45 TCGA-85-8071-01 19 52394070 52394070 A G ZNF649 Missense_Mutation p.F440S 0.47 tolerated(1) benign(0.007) TCGA-85-8071-01 19 53057857 53057857 C G ZNF808 Missense_Mutation p.A563G 0.33 tolerated(1) benign(0.01) TCGA-85-8071-01 19 54225447 54225447 C G MIR520G RNA 0.32 TCGA-85-8071-01 19 5456094 5456094 C A ZNRF4 Missense_Mutation p.H198N 0.38 tolerated(0.26) possibly_damaging(0.689) TCGA-85-8071-01 19 54759279 54759279 C G LILRB5 Silent p.G274G 0.37 TCGA-85-8071-01 19 54803516 54803516 T A LILRA3 Missense_Mutation p.H103L 0.76 tolerated(0.66) benign(0.036) TCGA-85-8071-01 19 55858769 55858769 G T SUV420H2 Silent p.V447V 0.64 TCGA-85-8071-01 19 56321583 56321583 T A NLRP11 Silent p.I131I 0.34 TCGA-85-8071-01 19 56467133 56467133 C G NLRP8 Missense_Mutation p.A570G 0.25 tolerated(0.07) benign(0.3) TCGA-85-8071-01 19 56515143 56515143 C A NLRP5 Missense_Mutation p.Q42K 0.11 tolerated(0.48) benign(0) TCGA-85-8071-01 19 56895457 56895457 A G ZNF582 Silent p.V443V 0.27 TCGA-85-8071-01 19 57642324 57642324 C A USP29 Missense_Mutation p.Q761K 0.39 tolerated(0.1) possibly_damaging(0.617) TCGA-85-8071-01 19 57840618 57840618 A T ZNF543 Missense_Mutation p.E596D 0.45 tolerated_low_confidence(0.07) benign(0.039) TCGA-85-8071-01 19 5843657 5843657 C A FUT3 3'UTR 0.33 TCGA-85-8071-01 19 9067391 9067391 A G MUC16 Silent p.A6685A 0.36 TCGA-85-8071-01 19 9296550 9296550 C A OR7D2 Missense_Mutation p.F31L 0.26 deleterious_low_confidence(0.02) benign(0.071) TCGA-85-8071-01 1 100550934 100550934 G A SASS6 Missense_Mutation p.L642F 0.71 tolerated(0.72) benign(0.002) TCGA-85-8071-01 1 109793274 109793274 G A CELSR2 Silent p.P191P 0.74 TCGA-85-8071-01 1 115632055 115632055 C A TSPAN2 5'UTR 0.75 TCGA-85-8071-01 1 1235948 1235948 C A ACAP3 Missense_Mutation p.G155W 0.62 deleterious(0.03) possibly_damaging(0.473) TCGA-85-8071-01 1 1235949 1235949 G C ACAP3 Silent p.T154T 0.62 TCGA-85-8071-01 1 144892247 144892247 G T PDE4DIP Intron 0.15 TCGA-85-8071-01 1 144952196 144952196 C T PDE4DIP Intron 0.12 TCGA-85-8071-01 1 145581255 145581255 G T PIAS3 Silent p.P328P 0.34 TCGA-85-8071-01 1 148004532 148004532 G T NBPF14 3'UTR 0.15 TCGA-85-8071-01 1 150082636 150082636 A T VPS45 Missense_Mutation p.I507F 0.33 deleterious(0.04) possibly_damaging(0.857) TCGA-85-8071-01 1 155106491 155106491 C A EFNA1 Missense_Mutation p.P189Q 0.33 tolerated(0.08) probably_damaging(0.974) TCGA-85-8071-01 1 155205580 155205580 T A GBA Missense_Mutation p.E427V 0.47 deleterious(0.05) benign(0.106) TCGA-85-8071-01 1 158435359 158435359 A T OR10K1 Missense_Mutation p.Q3L 0.44 tolerated(0.09) benign(0.01) TCGA-85-8071-01 1 158548760 158548760 C A OR10X1 Missense_Mutation p.M310I 0.35 deleterious(0.05) benign(0.008) TCGA-85-8071-01 1 158548761 158548761 A T OR10X1 Missense_Mutation p.M310K 0.35 deleterious(0) possibly_damaging(0.623) TCGA-85-8071-01 1 158621256 158621256 A G SPTA1 Silent p.D1126D 0.38 TCGA-85-8071-01 1 158655028 158655028 C T SPTA1 Missense_Mutation p.R45K 0.51 tolerated(0.37) probably_damaging(0.98) TCGA-85-8071-01 1 158746757 158746757 C A OR6N2 Silent p.G223G 0.25 TCGA-85-8071-01 1 159842218 159842218 C A CCDC19 3'UTR 0.53 TCGA-85-8071-01 1 161569565 161569565 C T FCGR2C Intron 0.40 TCGA-85-8071-01 1 16641909 16641909 G C FBXO42 Missense_Mutation p.A2G 0.94 tolerated_low_confidence(0.05) benign(0.058) TCGA-85-8071-01 1 167408614 167408614 G A CD247 Silent p.P62P 0.31 TCGA-85-8071-01 1 168148309 168148309 C G TIPRL 5'UTR 0.24 TCGA-85-8071-01 1 169388346 169388346 T C CCDC181 Missense_Mutation p.I374V 0.38 tolerated(0.07) benign(0.004) TCGA-85-8071-01 1 174979101 174979101 G C CACYBP Missense_Mutation p.L191F 0.57 deleterious(0) probably_damaging(0.998) TCGA-85-8071-01 1 177250767 177250767 A G BRINP2 3'UTR 0.27 TCGA-85-8071-01 1 183942797 183942797 C A COLGALT2 Nonsense_Mutation p.E194* 0.40 TCGA-85-8071-01 1 190129921 190129921 C T BRINP3 Missense_Mutation p.R354H 0.43 deleterious(0) probably_damaging(0.996) TCGA-85-8071-01 1 190423868 190423868 C T BRINP3 Silent p.K51K 0.37 TCGA-85-8071-01 1 196971756 196971756 G T CFHR5 Missense_Mutation p.C431F 0.47 deleterious(0) probably_damaging(0.999) TCGA-85-8071-01 1 197070643 197070643 T A ASPM Missense_Mutation p.T2580S 0.44 tolerated(0.19) benign(0.056) TCGA-85-8071-01 1 197071413 197071413 C T ASPM Missense_Mutation p.R2323K 0.40 tolerated(0.06) benign(0.308) TCGA-85-8071-01 1 201185836 201185836 G T IGFN1 Missense_Mutation p.A3184S 0.40 benign(0.237) TCGA-85-8071-01 1 203787734 203787734 A G ZC3H11A Missense_Mutation p.I31V 0.29 tolerated(0.08) benign(0.003) TCGA-85-8071-01 1 205275341 205275341 T C NUAK2 Missense_Mutation p.N222S 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-85-8071-01 1 206613419 206613419 C T SRGAP2 Missense_Mutation p.A535V 0.36 deleterious(0) possibly_damaging(0.848) TCGA-85-8071-01 1 208200569 208200569 G C PLXNA2 3'UTR 0.33 TCGA-85-8071-01 1 217604560 217604560 C G GPATCH2 Missense_Mutation p.G505A 0.41 deleterious(0.01) probably_damaging(0.969) TCGA-85-8071-01 1 217793562 217793562 T - GPATCH2 Frame_Shift_Del p.D113Ifs*10 0.20 TCGA-85-8071-01 1 220170329 220170329 G A EPRS Missense_Mutation p.P846L 0.40 tolerated(0.09) benign(0.009) TCGA-85-8071-01 1 220279373 220279373 G T IARS2 Missense_Mutation p.G403C 0.40 deleterious(0.04) possibly_damaging(0.908) TCGA-85-8071-01 1 228523950 228523950 G T OBSCN Missense_Mutation p.D6463Y 0.32 benign(0.156) TCGA-85-8071-01 1 233394416 233394416 C A PCNXL2 Missense_Mutation p.V398L 0.38 tolerated_low_confidence(0.3) benign(0.002) TCGA-85-8071-01 1 234582701 234582701 T A TARBP1 Missense_Mutation p.N661I 0.40 deleterious(0.05) benign(0.235) TCGA-85-8071-01 1 237753286 237753286 C A RYR2 Missense_Mutation p.N1264K 0.40 benign(0.022) TCGA-85-8071-01 1 240371769 240371769 T A FMN2 Silent p.P1219P 0.43 TCGA-85-8071-01 1 241953945 241953945 G C WDR64 Missense_Mutation p.A972P 0.53 tolerated(0.96) benign(0.002) TCGA-85-8071-01 1 245850433 245850433 G T KIF26B Missense_Mutation p.G1383V 0.24 deleterious(0) unknown(0) TCGA-85-8071-01 1 248129497 248129497 G A OR2AK2 Silent p.A288A 0.24 TCGA-85-8071-01 1 248844765 248844765 G A OR14I1 Missense_Mutation p.P281S 0.42 deleterious(0.02) probably_damaging(0.99) TCGA-85-8071-01 1 25785047 25785047 A G TMEM57 Missense_Mutation p.N273S 0.64 tolerated(0.44) benign(0.019) TCGA-85-8071-01 1 27939851 27939851 G A FGR Silent p.F420F 0.09 TCGA-85-8071-01 1 3386008 3386008 G T ARHGEF16 Missense_Mutation p.E291D 0.76 deleterious(0) probably_damaging(0.983) TCGA-85-8071-01 1 38079942 38079942 C T RSPO1 Missense_Mutation p.G117D 0.48 deleterious(0.01) possibly_damaging(0.585) TCGA-85-8071-01 1 38172737 38172737 G T CDCA8 Splice_Site p.X266_splice 0.29 TCGA-85-8071-01 1 43887768 43887768 G A SZT2 Silent p.Q547Q 0.34 TCGA-85-8071-01 1 48694552 48694552 G T SLC5A9 Missense_Mutation p.G89C 0.41 deleterious(0) probably_damaging(1) TCGA-85-8071-01 1 53990523 53990523 C A GLIS1 Missense_Mutation p.R332L 0.40 deleterious(0) benign(0.112) TCGA-85-8071-01 1 57538052 57538052 G T DAB1 Silent p.S114S 0.36 TCGA-85-8071-01 1 60505688 60505688 A T C1orf87 Silent p.S216S 0.51 TCGA-85-8071-01 1 64643847 64643847 G T ROR1 Missense_Mutation p.R708L 0.30 deleterious(0) possibly_damaging(0.454) TCGA-85-8071-01 1 70501916 70501916 G A LRRC7 Splice_Site p.X665_splice 0.34 TCGA-85-8071-01 1 70883619 70883619 G A CTH Splice_Site p.X84_splice 0.33 TCGA-85-8071-01 1 74957925 74957925 A T TNNI3K Missense_Mutation p.R877W 0.40 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-85-8071-01 1 79412047 79412047 T C ELTD1 Silent p.E79E 0.45 TCGA-85-8071-01 20 10273623 10273623 G C SNAP25 Intron 0.45 TCGA-85-8071-01 20 16492147 16492147 C T KIF16B Missense_Mutation p.V158M 0.33 deleterious(0.01) probably_damaging(1) TCGA-85-8071-01 20 16496295 16496295 G C KIF16B Silent p.L82L 0.36 TCGA-85-8071-01 20 2542623 2542623 C A TMC2 Missense_Mutation p.P174H 0.34 deleterious(0) probably_damaging(0.986) TCGA-85-8071-01 20 29976892 29976892 C G DEFB119 Missense_Mutation p.G68A 0.15 tolerated(0.94) benign(0.389) TCGA-85-8071-01 20 31643349 31643349 C T BPIFB3 Silent p.G40G 0.71 TCGA-85-8071-01 20 32298372 32298372 T A PXMP4 Missense_Mutation p.I122F 0.72 deleterious(0) probably_damaging(0.948) TCGA-85-8071-01 20 3285183 3285183 A G C20orf194 Silent p.V562V 0.35 TCGA-85-8071-01 20 5987965 5987965 A T CRLS1 Intron 0.55 TCGA-85-8071-01 20 6057702 6057702 C T FERMT1 3'UTR 0.40 TCGA-85-8071-01 22 17488833 17488833 A G GAB4 Missense_Mutation p.F58L 0.37 deleterious(0.02) benign(0.044) TCGA-85-8071-01 22 21333811 21333811 A G AIFM3 Intron 0.50 TCGA-85-8071-01 22 23029479 23029479 C G IGLV3-25 Silent p.P27P 0.38 TCGA-85-8071-01 22 32239180 32239180 T C DEPDC5 Missense_Mutation p.V863A 0.42 deleterious(0.03) probably_damaging(0.997) TCGA-85-8071-01 22 38823277 38823277 C A KCNJ4 Silent p.V287V 0.38 TCGA-85-8071-01 22 48972337 48972337 C A FAM19A5 Intron 0.39 TCGA-85-8071-01 22 50716580 50716580 G C PLXNB2 Missense_Mutation p.T1618S 0.49 tolerated(0.41) probably_damaging(0.999) TCGA-85-8071-01 2 101019114 101019114 T C CHST10 Missense_Mutation p.Y35C 0.35 deleterious(0.04) possibly_damaging(0.905) TCGA-85-8071-01 2 105883890 105883890 C A TGFBRAP1 Missense_Mutation p.A845S 0.46 tolerated(0.08) benign(0.341) TCGA-85-8071-01 2 111435580 111435580 G C BUB1 5'UTR 0.45 TCGA-85-8071-01 2 113999293 113999293 A C PAX8 Missense_Mutation p.D204E 0.31 tolerated(1) benign(0.001) TCGA-85-8071-01 2 118854111 118854111 G T INSIG2 5'UTR 0.22 TCGA-85-8071-01 2 127821523 127821523 C A BIN1 Silent p.P228P 0.32 TCGA-85-8071-01 2 130832400 130832400 C A POTEF Missense_Mutation p.G882V 0.43 deleterious_low_confidence(0) probably_damaging(1) TCGA-85-8071-01 2 136029372 136029372 C A ZRANB3 Missense_Mutation p.R391L 0.35 deleterious(0) probably_damaging(0.942) TCGA-85-8071-01 2 138400144 138400144 T C THSD7B Missense_Mutation p.C1299R 0.43 deleterious(0) unknown(0) TCGA-85-8071-01 2 155555602 155555602 C G KCNJ3 Missense_Mutation p.I105M 0.42 deleterious(0) probably_damaging(0.997) TCGA-85-8071-01 2 160636601 160636601 A T LY75-CD302 Nonsense_Mutation p.C1769* 0.68 TCGA-85-8071-01 2 163070479 163070479 C T FAP Missense_Mutation p.R324K 0.43 tolerated(0.88) benign(0) TCGA-85-8071-01 2 166172054 166172054 G T SCN2A Missense_Mutation p.S486I 0.45 deleterious(0.01) possibly_damaging(0.847) TCGA-85-8071-01 2 168099379 168099379 A G XIRP2 Missense_Mutation p.R493G 0.44 probably_damaging(0.999) TCGA-85-8071-01 2 168115261 168115261 C A XIRP2 3'UTR 0.37 TCGA-85-8071-01 2 169721359 169721359 T C NOSTRIN Missense_Mutation p.I524T 0.46 deleterious(0.02) possibly_damaging(0.9) TCGA-85-8071-01 2 177017739 177017739 C A HOXD3 5'UTR 0.47 TCGA-85-8071-01 2 179594574 179594574 G C TTN Missense_Mutation p.R6136G 0.46 TCGA-85-8071-01 2 179611610 179611610 C T TTN Intron 0.51 TCGA-85-8071-01 2 179622275 179622275 G T TTN Missense_Mutation p.P3558T 0.44 TCGA-85-8071-01 2 179634836 179634836 G T TTN Nonsense_Mutation p.Y2864* 0.52 TCGA-85-8071-01 2 179718337 179718337 G T CCDC141 Nonsense_Mutation p.Y1025* 0.42 TCGA-85-8071-01 2 198948701 198948701 G C PLCL1 Missense_Mutation p.E154Q 0.53 tolerated(0.05) benign(0.334) TCGA-85-8071-01 2 198953598 198953598 T C PLCL1 Missense_Mutation p.I911T 0.41 deleterious(0) benign(0.001) TCGA-85-8071-01 2 200193527 200193527 A T SATB2 Missense_Mutation p.V427E 0.25 deleterious(0) benign(0.04) TCGA-85-8071-01 2 209216100 209216100 T C PIKFYVE Missense_Mutation p.M1879T 0.36 deleterious(0) probably_damaging(0.999) TCGA-85-8071-01 2 216243981 216243981 G T FN1 Missense_Mutation p.Q1832K 0.52 tolerated(0.24) benign(0.062) TCGA-85-8071-01 2 216960674 216960674 C T TMEM169 5'UTR 0.62 TCGA-85-8071-01 2 219028834 219028834 T C CXCR1 3'UTR 0.70 TCGA-85-8071-01 2 220333660 220333660 C A SPEG Silent p.G1127G 0.38 TCGA-85-8071-01 2 220498106 220498106 G C SLC4A3 Missense_Mutation p.G490A 0.41 tolerated(0.38) benign(0.026) TCGA-85-8071-01 2 223496323 223496323 C T FARSB Silent p.K262K 0.16 TCGA-85-8071-01 2 228882255 228882255 C T SPHKAP Silent p.T1105T 0.14 TCGA-85-8071-01 2 237172935 237172935 C T ASB18 Silent p.K18K 0.29 TCGA-85-8071-01 2 240969067 240969067 G A OR6B2 Silent p.V260V 0.33 TCGA-85-8071-01 2 25551567 25551567 G T DNMT3A Intron 0.35 TCGA-85-8071-01 2 26151785 26151785 G C KIF3C 3'UTR 0.46 TCGA-85-8071-01 2 33749034 33749034 C A RASGRP3 Missense_Mutation p.S202Y 0.42 deleterious(0) probably_damaging(0.999) TCGA-85-8071-01 2 48701880 48701880 G C PPP1R21 Missense_Mutation p.E383Q 0.50 tolerated(0.17) possibly_damaging(0.597) TCGA-85-8071-01 2 48872227 48872227 C T STON1-GTF2A1L Missense_Mutation p.P824L 0.31 deleterious(0) probably_damaging(1) TCGA-85-8071-01 2 51253550 51253550 C G NRXN1 Missense_Mutation p.G277A 0.40 tolerated(0.08) benign(0.001) TCGA-85-8071-01 2 7023642 7023642 G T RSAD2 Nonsense_Mutation p.E163* 0.42 TCGA-85-8071-01 2 7027129 7027129 T C RSAD2 Missense_Mutation p.I191T 0.48 deleterious(0) probably_damaging(0.996) TCGA-85-8071-01 2 72360206 72360206 C A CYP26B1 Silent p.L364L 0.34 TCGA-85-8071-01 2 74657062 74657062 T C RTKN Silent p.K216K 0.33 TCGA-85-8071-01 2 79347987 79347987 C A REG1A 5'UTR 0.55 TCGA-85-8071-01 2 86272893 86272893 C T POLR1A Splice_Site p.X912_splice 0.32 TCGA-85-8071-01 2 89266222 89266222 G T IGKV1-6 Silent p.L12L 0.43 TCGA-85-8071-01 2 90044389 90044389 G A IGKV2D-24 Missense_Mutation p.E104K 0.39 tolerated(0.05) benign(0.137) TCGA-85-8071-01 2 99636766 99636766 G T TSGA10 Missense_Mutation p.H598Q 0.24 tolerated(1) benign(0.013) TCGA-85-8071-01 3 105470381 105470381 T C CBLB Silent p.L216L 0.46 TCGA-85-8071-01 3 108819329 108819329 A G MORC1 Silent p.F83F 0.40 TCGA-85-8071-01 3 128890569 128890569 C A CNBP Missense_Mutation p.R11L 0.44 tolerated(0.06) possibly_damaging(0.755) TCGA-85-8071-01 3 133099182 133099182 G A TMEM108 Silent p.Q209Q 0.38 TCGA-85-8071-01 3 134343930 134343930 G T KY Missense_Mutation p.Q150K 0.33 tolerated(0.66) benign(0.001) TCGA-85-8071-01 3 138216916 138216917 - A CEP70 Frame_Shift_Ins p.A565Sfs*7 0.24 TCGA-85-8071-01 3 142284965 142284966 AT - ATR Frame_Shift_Del p.I97* 0.28 TCGA-85-8071-01 3 146311716 146311716 G A PLSCR5 Silent p.Y148Y 0.32 TCGA-85-8071-01 3 167039933 167039933 C A ZBBX Nonsense_Mutation p.E319* 0.35 TCGA-85-8071-01 3 167039934 167039934 C A ZBBX Missense_Mutation p.M318I 0.35 deleterious(0.01) benign(0.386) TCGA-85-8071-01 3 184105795 184105795 C T CHRD Missense_Mutation p.P843L 0.16 deleterious(0.02) probably_damaging(1) TCGA-85-8071-01 3 21706410 21706410 C A ZNF385D Missense_Mutation p.A45S 0.70 tolerated(1) probably_damaging(0.935) TCGA-85-8071-01 3 39307622 39307622 T A CX3CR1 Missense_Mutation p.R159W 0.66 deleterious(0) probably_damaging(1) TCGA-85-8071-01 3 42751189 42751189 C G CCDC13 Missense_Mutation p.E659Q 0.80 deleterious(0) probably_damaging(0.999) TCGA-85-8071-01 3 68466508 68466508 A G FAM19A1 Missense_Mutation p.K66R 0.72 tolerated(0.36) possibly_damaging(0.76) TCGA-85-8071-01 3 85935421 85935421 C T CADM2 Missense_Mutation p.S151F 0.65 deleterious(0.01) possibly_damaging(0.894) TCGA-85-8071-01 3 9975077 9975077 C A IL17RC Missense_Mutation p.L726M 0.15 deleterious(0) probably_damaging(1) TCGA-85-8071-01 4 104037818 104037818 T A CENPE Missense_Mutation p.Y2453F 0.33 probably_damaging(0.971) TCGA-85-8071-01 4 104079535 104079535 C A CENPE Silent p.S985S 0.40 TCGA-85-8071-01 4 104079536 104079536 G A CENPE Missense_Mutation p.S985L 0.46 benign(0) TCGA-85-8071-01 4 113461079 113461079 C G C4orf21 Missense_Mutation p.G2038R 0.38 deleterious(0) probably_damaging(0.998) TCGA-85-8071-01 4 114280034 114280034 G T ANK2 Missense_Mutation p.R3420S 0.28 benign(0.008) TCGA-85-8071-01 4 115856362 115856362 T A NDST4 Silent p.P512P 0.39 TCGA-85-8071-01 4 122593781 122593781 C T ANXA5 Missense_Mutation p.A178T 0.47 tolerated(0.5) benign(0.001) TCGA-85-8071-01 4 123236694 123236694 A G KIAA1109 Missense_Mutation p.I3464V 0.47 probably_damaging(0.946) TCGA-85-8071-01 4 140282886 140282886 A G NAA15 Missense_Mutation p.I516M 0.55 tolerated(0.14) benign(0.255) TCGA-85-8071-01 4 149035387 149035387 C T NR3C2 Silent p.Q889Q 0.35 TCGA-85-8071-01 4 151408987 151408987 C G LRBA Splice_Site p.X2161_splice 0.37 TCGA-85-8071-01 4 155219677 155219677 C A DCHS2 Missense_Mutation p.S1475I 0.36 tolerated(0.1) benign(0.139) TCGA-85-8071-01 4 159554586 159554586 T C RXFP1 Missense_Mutation p.L310P 0.48 deleterious(0) probably_damaging(0.926) TCGA-85-8071-01 4 166986970 166986970 G A TLL1 Missense_Mutation p.D715N 0.32 deleterious(0) probably_damaging(1) TCGA-85-8071-01 4 177032766 177032766 C T WDR17 Missense_Mutation p.A36V 0.38 deleterious(0) probably_damaging(0.995) TCGA-85-8071-01 4 183672950 183672950 C A TENM3 Intron 0.37 TCGA-85-8071-01 4 42895368 42895368 C G GRXCR1 Missense_Mutation p.L29V 0.73 tolerated(0.17) probably_damaging(0.996) TCGA-85-8071-01 4 44450544 44450544 C - KCTD8 5'UTR 0.41 TCGA-85-8071-01 4 57219621 57219621 C T AASDH Missense_Mutation p.A509T 0.35 deleterious(0.03) benign(0.126) TCGA-85-8071-01 4 69817323 69817323 C A UGT2A3 Missense_Mutation p.E52D 0.33 deleterious(0.03) benign(0.03) TCGA-85-8071-01 4 85676542 85676542 A G WDFY3 Silent p.D1812D 0.30 TCGA-85-8071-01 4 90874303 90874303 T A MMRN1 Missense_Mutation p.Y1141N 0.33 deleterious(0) probably_damaging(1) TCGA-85-8071-01 4 94006154 94006154 C A GRID2 Missense_Mutation p.L85I 0.40 deleterious(0) probably_damaging(0.946) TCGA-85-8071-01 5 108516568 108516568 C T FER Silent p.P723P 0.61 TCGA-85-8071-01 5 113698875 113698875 A T KCNN2 Missense_Mutation p.S135C 0.85 deleterious(0.05) probably_damaging(0.979) TCGA-85-8071-01 5 1210590 1210590 G A SLC6A19 Silent p.V125V 0.68 TCGA-85-8071-01 5 132199883 132199883 G A GDF9 Missense_Mutation p.R115W 0.63 deleterious(0.01) possibly_damaging(0.852) TCGA-85-8071-01 5 13862840 13862840 G T DNAH5 Missense_Mutation p.A1538E 0.47 probably_damaging(0.913) TCGA-85-8071-01 5 142435614 142435614 G T ARHGAP26 Missense_Mutation p.M465I 0.66 deleterious(0) benign(0.076) TCGA-85-8071-01 5 145493792 145493792 G T LARS Silent p.T1136T 0.71 TCGA-85-8071-01 5 151771996 151771996 T A NMUR2 Missense_Mutation p.Q335L 0.68 deleterious(0) benign(0.08) TCGA-85-8071-01 5 171509332 171509332 C A STK10 Nonsense_Mutation p.E663* 0.71 TCGA-85-8071-01 5 176687107 176687107 C T NSD1 Missense_Mutation p.P1695L 0.67 deleterious(0.01) possibly_damaging(0.621) TCGA-85-8071-01 5 23527053 23527053 G T PRDM9 Missense_Mutation p.R619L 0.21 tolerated(0.57) benign(0.007) TCGA-85-8071-01 5 31534430 31534430 A T C5orf22 Missense_Mutation p.N45Y 0.17 deleterious(0.01) probably_damaging(0.971) TCGA-85-8071-01 5 35867411 35867411 G T IL7R Silent p.G75G 0.24 TCGA-85-8071-01 5 3599491 3599491 G T IRX1 Missense_Mutation p.K143N 0.29 deleterious(0) probably_damaging(0.95) TCGA-85-8071-01 5 43412428 43412428 C T CCL28 5'UTR 0.28 TCGA-85-8071-01 5 50689459 50689459 G A ISL1 3'UTR 0.62 TCGA-85-8071-01 5 5306783 5306783 C T ADAMTS16 Missense_Mutation p.P1118L 0.50 deleterious(0.05) benign(0.005) TCGA-85-8071-01 5 63256913 63256913 G T HTR1A Missense_Mutation p.L212M 0.64 tolerated(0.11) probably_damaging(1) TCGA-85-8071-01 5 70757750 70757750 T G BDP1 Missense_Mutation p.M199R 0.54 deleterious(0) probably_damaging(0.997) TCGA-85-8071-01 5 7789874 7789874 C G ADCY2 Missense_Mutation p.H863Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-85-8071-01 6 108616382 108616383 - GCTCTG LACE1 In_Frame_Ins p.L33_A34dup 0.08 TCGA-85-8071-01 6 130370955 130370955 C G L3MBTL3 Missense_Mutation p.S90C 0.36 tolerated(0.08) benign(0.002) TCGA-85-8071-01 6 135300380 135300380 C T HBS1L Missense_Mutation p.D542N 0.87 tolerated(0.48) probably_damaging(0.997) TCGA-85-8071-01 6 136599608 136599608 C T BCLAF1 Silent p.R137R 0.10 TCGA-85-8071-01 6 152443457 152443457 T A SYNE1 3'UTR 0.92 TCGA-85-8071-01 6 159653811 159653811 A G FNDC1 Missense_Mutation p.N756S 0.73 tolerated_low_confidence(0.42) unknown(0) TCGA-85-8071-01 6 170140323 170140323 G T TCTE3 Silent p.S185S 0.88 TCGA-85-8071-01 6 17606104 17606104 G - FAM8A1 Splice_Site p.X320_splice 0.49 TCGA-85-8071-01 6 25926018 25926018 C G SLC17A2 Missense_Mutation p.G3R 0.75 tolerated(0.13) benign(0.065) TCGA-85-8071-01 6 26156664 26156664 G T HIST1H1E Nonsense_Mutation p.E16* 0.85 TCGA-85-8071-01 6 28116207 28116207 C G ZKSCAN8 Missense_Mutation p.P8A 0.87 tolerated(1) benign(0.001) TCGA-85-8071-01 6 28963776 28963776 C A ZNF311 Missense_Mutation p.D335Y 0.15 deleterious(0.01) probably_damaging(0.927) TCGA-85-8071-01 6 29365023 29365023 C T OR12D2 Silent p.L183L 0.88 TCGA-85-8071-01 6 31125269 31125269 C T CCHCR1 Missense_Mutation p.E37K 0.83 deleterious_low_confidence(0.03) benign(0.219) TCGA-85-8071-01 6 35285759 35285759 G A DEF6 Missense_Mutation p.R300H 0.82 deleterious(0) probably_damaging(0.991) TCGA-85-8071-01 6 41250267 41250267 T A TREM1 Missense_Mutation p.H91L 0.82 deleterious(0) benign(0.031) TCGA-85-8071-01 6 49754082 49754082 T A PGK2 Silent p.A273A 0.84 TCGA-85-8071-01 6 50016353 50016354 - AA DEFB112 Frame_Shift_Ins p.L4Ffs*2 0.39 TCGA-85-8071-01 6 70071361 70071361 C A BAI3 Nonsense_Mutation p.S1399* 0.74 TCGA-85-8071-01 6 87969740 87969740 G A ZNF292 Silent p.L2131L 0.86 TCGA-85-8071-01 7 105662879 105662879 C T CDHR3 Silent p.I687I 0.82 TCGA-85-8071-01 7 132192456 132192456 C G PLXNA4 Missense_Mutation p.D333H 0.83 deleterious(0) probably_damaging(1) TCGA-85-8071-01 7 134346528 134346528 G A BPGM Missense_Mutation p.R90H 0.54 deleterious(0) probably_damaging(0.977) TCGA-85-8071-01 7 137266675 137266675 C T DGKI Splice_Site p.X522_splice 0.93 TCGA-85-8071-01 7 141722211 141722211 T C MGAM Missense_Mutation p.I285T 0.83 deleterious(0) possibly_damaging(0.873) TCGA-85-8071-01 7 142149087 142149087 G T TRBV5-5 Missense_Mutation p.P62T 0.69 deleterious(0.03) probably_damaging(0.945) TCGA-85-8071-01 7 142564340 142564340 C G EPHB6 Missense_Mutation p.Q522E 0.03 tolerated(1) probably_damaging(0.949) TCGA-85-8071-01 7 143884362 143884362 C A ARHGEF35 Missense_Mutation p.S372I 0.78 tolerated(0.09) benign(0.004) TCGA-85-8071-01 7 154379717 154379717 G C DPP6 Intron 0.85 TCGA-85-8071-01 7 37780444 37780444 T C GPR141 Missense_Mutation p.L150P 0.80 tolerated(0.23) benign(0.014) TCGA-85-8071-01 7 50444395 50444395 G A IKZF1 Missense_Mutation p.G109S 0.38 deleterious(0.05) benign(0.426) TCGA-85-8071-01 7 77756719 77756719 A T MAGI2 Missense_Mutation p.V1073E 0.87 deleterious(0) probably_damaging(0.994) TCGA-85-8071-01 7 77789550 77789550 T C MAGI2 Silent p.V879V 0.05 TCGA-85-8071-01 7 78256555 78256555 C A MAGI2 Missense_Mutation p.C140F 0.88 deleterious(0) possibly_damaging(0.883) TCGA-85-8071-01 7 95025612 95025612 G T PON3 Silent p.V17V 0.87 TCGA-85-8071-01 7 99036780 99036780 G A CPSF4 Silent p.A25A 0.09 TCGA-85-8071-01 8 109797044 109797044 G T TMEM74 Missense_Mutation p.A95E 0.36 tolerated(0.22) benign(0.439) TCGA-85-8071-01 8 110374832 110374832 G A PKHD1L1 Missense_Mutation p.G8D 0.29 tolerated_low_confidence(0.31) benign(0.034) TCGA-85-8071-01 8 110457574 110457574 C T PKHD1L1 Silent p.L1826L 0.28 TCGA-85-8071-01 8 114186105 114186105 G T CSMD3 Silent p.P185P 0.34 TCGA-85-8071-01 8 131793104 131793104 C G ADCY8 Silent p.V1096V 0.37 TCGA-85-8071-01 8 139263216 139263216 G T FAM135B Missense_Mutation p.T137K 0.35 deleterious(0) benign(0.137) TCGA-85-8071-01 8 144993438 144993438 C A PLEC Silent p.T3654T 0.46 TCGA-85-8071-01 8 144995358 144995358 C A PLEC Silent p.T3014T 0.37 TCGA-85-8071-01 8 17478654 17478654 G T PDGFRL Missense_Mutation p.G150C 0.40 deleterious(0) probably_damaging(1) TCGA-85-8071-01 8 24208812 24208812 C A ADAM28 Missense_Mutation p.Q723K 0.43 tolerated(0.71) benign(0.03) TCGA-85-8071-01 8 24339757 24339757 C G ADAM7 Missense_Mutation p.R270G 0.36 tolerated(0.07) benign(0.262) TCGA-85-8071-01 8 3165939 3165939 C G CSMD1 Missense_Mutation p.V1240L 0.37 benign(0.109) TCGA-85-8071-01 8 3432491 3432491 G C CSMD1 Silent p.V440V 0.32 TCGA-85-8071-01 8 53077710 53077710 C T ST18 Missense_Mutation p.R427H 0.16 deleterious(0) probably_damaging(1) TCGA-85-8071-01 8 55538326 55538326 G T RP1 Missense_Mutation p.E628D 0.42 deleterious(0.02) benign(0.437) TCGA-85-8071-01 8 55538327 55538327 G T RP1 Missense_Mutation p.A629S 0.38 tolerated(0.1) benign(0.114) TCGA-85-8071-01 8 67356946 67356946 G T ADHFE1 Missense_Mutation p.V106F 0.37 deleterious(0) benign(0.106) TCGA-85-8071-01 8 7698580 7698580 G T DEFB104A Missense_Mutation p.R28I 0.17 deleterious(0.02) benign(0.193) TCGA-85-8071-01 8 77764884 77764884 C A ZFHX4 Silent p.A1909A 0.50 TCGA-85-8071-01 8 77767370 77767370 C A ZFHX4 Missense_Mutation p.T2738N 0.29 possibly_damaging(0.889) TCGA-85-8071-01 8 79645903 79645903 G T IL7 3'UTR 0.31 TCGA-85-8071-01 8 87656075 87656075 A C CNGB3 Missense_Mutation p.L361R 0.36 deleterious(0) probably_damaging(0.993) TCGA-85-8071-01 8 94800086 94800086 C A TMEM67 Missense_Mutation p.P476H 0.50 deleterious(0) probably_damaging(0.962) TCGA-85-8071-01 9 107267009 107267009 G A OR13F1 Missense_Mutation p.A156T 0.37 deleterious(0.04) benign(0.094) TCGA-85-8071-01 9 115580096 115580096 G T SNX30 Splice_Site p.X153_splice 0.44 TCGA-85-8071-01 9 118950002 118950002 C A PAPPA Missense_Mutation p.Q329K 0.38 tolerated(0.17) benign(0.184) TCGA-85-8071-01 9 123782258 123782258 T C C5 Missense_Mutation p.Y501C 0.37 deleterious(0) probably_damaging(0.998) TCGA-85-8071-01 9 125154785 125154785 G A PTGS1 Missense_Mutation p.D588N 0.45 tolerated(0.32) benign(0.002) TCGA-85-8071-01 9 125239667 125239667 T A OR1J1 Missense_Mutation p.D180V 0.33 deleterious_low_confidence(0) probably_damaging(1) TCGA-85-8071-01 9 127454810 127454810 G A NR6A1 Intron 0.49 TCGA-85-8071-01 9 136507481 136507481 C A DBH Silent p.T213T 0.43 TCGA-85-8071-01 9 137989690 137989690 C G OLFM1 Intron 0.48 TCGA-85-8071-01 9 139233118 139233118 G T GPSM1 Missense_Mutation p.A309S 0.46 deleterious(0) possibly_damaging(0.665) TCGA-85-8071-01 9 20770055 20770055 G C FOCAD Missense_Mutation p.E242Q 0.74 tolerated(0.09) probably_damaging(0.974) TCGA-85-8071-01 9 21206600 21206600 A G IFNA10 Missense_Mutation p.V166A 0.66 deleterious(0) benign(0.307) TCGA-85-8071-01 9 21971110 21971110 T A CDKN2A Missense_Mutation p.H83L 0.73 deleterious(0) probably_damaging(1) TCGA-85-8071-01 9 32633213 32633213 C A TAF1L Missense_Mutation p.G789C 0.44 deleterious(0.03) benign(0.066) TCGA-85-8071-01 9 33948456 33948456 G A UBAP2 Nonsense_Mutation p.Q396* 0.41 TCGA-85-8071-01 9 37769974 37769974 C T TRMT10B Missense_Mutation p.P204S 0.38 tolerated(0.1) possibly_damaging(0.53) TCGA-85-8071-01 9 40774478 40774478 C T ZNF658 Missense_Mutation p.R266K 0.37 tolerated(1) benign(0.003) TCGA-85-8071-01 9 6413440 6413440 C T UHRF2 5'UTR 0.79 TCGA-85-8071-01 9 71098842 71098842 C G PGM5 Missense_Mutation p.L453V 0.32 tolerated(0.31) benign(0) TCGA-85-8071-01 9 82333708 82333708 G C TLE4 Missense_Mutation p.G471A 0.38 deleterious(0.04) probably_damaging(0.998) TCGA-85-8071-01 9 95003172 95003172 G C IARS Silent p.V1083V 0.44 TCGA-85-8071-01 X 107923980 107923980 A T COL4A5 Silent p.P1338P 1.00 TCGA-85-8071-01 X 109943904 109943904 C T CHRDL1 Missense_Mutation p.R196Q 0.90 tolerated(0.25) possibly_damaging(0.556) TCGA-85-8071-01 X 111156018 111156018 G A TRPC5 Missense_Mutation p.T134M 0.89 tolerated(0.08) benign(0.302) TCGA-85-8071-01 X 119249812 119249812 T C RHOXF1 5'UTR 0.89 TCGA-85-8071-01 X 144337212 144337212 G T SPANXN1 Missense_Mutation p.D33Y 0.79 deleterious(0.03) possibly_damaging(0.823) TCGA-85-8071-01 X 149639507 149639507 C G MAMLD1 Silent p.P529P 0.82 TCGA-85-8071-01 X 151093166 151093166 C G MAGEA4 3'UTR 0.86 TCGA-85-8071-01 X 152482073 152482073 A G MAGEA1 3'UTR 0.81 TCGA-85-8071-01 X 64138856 64138856 G T ZC4H2 Intron 0.77 TCGA-85-8071-01 X 72673470 72673470 C T CDX4 Missense_Mutation p.A207V 0.11 deleterious(0) probably_damaging(0.996) TCGA-85-8071-01 X 78618558 78618558 A T ITM2A Missense_Mutation p.F108I 1.00 deleterious(0.02) benign(0.122) TCGA-85-8071-01 Y 5605665 5605665 C A PCDH11Y Silent p.A1235A 0.84 TCGA-85-8071-01 Y 5605666 5605666 C T PCDH11Y Missense_Mutation p.L1236F 0.79 deleterious_low_confidence(0.01) possibly_damaging(0.742) TCGA-85-8072-01 10 105331329 105331329 C A NEURL1 Silent p.I133I 0.40 TCGA-85-8072-01 10 129913586 129913586 C G MKI67 Missense_Mutation p.K362N 0.44 deleterious(0.02) possibly_damaging(0.63) TCGA-85-8072-01 10 134523916 134523916 G A INPP5A Silent p.V201V 0.16 TCGA-85-8072-01 10 1405366 1405366 C A ADARB2 Missense_Mutation p.V312L 0.36 tolerated(0.15) probably_damaging(0.998) TCGA-85-8072-01 10 28284057 28284057 C G ARMC4 Silent p.L5L 0.28 TCGA-85-8072-01 10 43016492 43016492 T A ZNF37BP RNA 0.08 TCGA-85-8072-01 10 56287609 56287609 T C PCDH15 Silent p.P40P 0.14 TCGA-85-8072-01 10 64383011 64383011 G A ZNF365 Splice_Site p.X377_splice 0.21 TCGA-85-8072-01 10 98744890 98744890 G A C10orf12 Silent p.%3D 0.23 TCGA-85-8072-01 10 99133611 99133611 C T RRP12 Silent p.K613K 0.09 TCGA-85-8072-01 11 116706905 116706905 C T APOA1 Silent p.Q141Q 0.14 TCGA-85-8072-01 11 124793890 124793890 T C HEPACAM Silent p.P148P 0.18 TCGA-85-8072-01 11 5626766 5626766 G T TRIM6 Missense_Mutation p.R268L 0.23 deleterious(0.02) probably_damaging(0.959) TCGA-85-8072-01 11 59210786 59210786 A G OR5A1 Missense_Mutation p.I49V 0.14 tolerated(0.06) benign(0.011) TCGA-85-8072-01 11 60073630 60073630 C G MS4A4A Missense_Mutation p.L202V 0.20 tolerated(0.13) possibly_damaging(0.836) TCGA-85-8072-01 11 6589972 6589972 G C DNHD1 Missense_Mutation p.E4247Q 0.37 benign(0.377) TCGA-85-8072-01 11 71939209 71939209 G C INPPL1 Intron 0.06 TCGA-85-8072-01 11 89867948 89867948 C T NAALAD2 Silent p.L8L 0.32 TCGA-85-8072-01 12 101368577 101368577 C T ANO4 Intron 0.28 TCGA-85-8072-01 12 119568534 119568534 C A SRRM4 Silent p.S222S 0.35 TCGA-85-8072-01 12 122839826 122839826 T C CLIP1 Missense_Mutation p.I347V 0.12 deleterious(0) possibly_damaging(0.801) TCGA-85-8072-01 12 14805942 14805942 C T GUCY2C Missense_Mutation p.D493N 0.16 tolerated(0.15) possibly_damaging(0.58) TCGA-85-8072-01 12 20903770 20903770 C A SLCO1C1 Missense_Mutation p.P654T 0.18 tolerated(0.06) benign(0.002) TCGA-85-8072-01 12 21051392 21051392 G T SLCO1B3 Missense_Mutation p.A569S 0.30 tolerated(1) benign(0.006) TCGA-85-8072-01 12 43886391 43886391 C A ADAMTS20 Missense_Mutation p.K331N 0.24 tolerated(0.06) benign(0.002) TCGA-85-8072-01 12 48192422 48192422 G A HDAC7 Missense_Mutation p.T91M 0.18 tolerated(0.25) possibly_damaging(0.708) TCGA-85-8072-01 12 67686452 67686452 T A CAND1 Missense_Mutation p.V88E 0.19 deleterious(0) probably_damaging(0.98) TCGA-85-8072-01 12 81777864 81777864 C T PPFIA2 Missense_Mutation p.A308T 0.16 tolerated(0.18) possibly_damaging(0.767) TCGA-85-8072-01 13 100622762 100622764 GCC - ZIC5 In_Frame_Del p.R389del 0.39 TCGA-85-8072-01 13 114135026 114135026 C A DCUN1D2 Missense_Mutation p.G85W 0.33 deleterious(0) probably_damaging(1) TCGA-85-8072-01 13 114751214 114751214 C A RASA3 Silent p.T767T 0.15 TCGA-85-8072-01 13 20010437 20010437 A G TPTE2 Missense_Mutation p.Y349H 0.38 tolerated(0.53) benign(0.014) TCGA-85-8072-01 13 26788982 26788982 C T RNF6 Missense_Mutation p.R346K 0.45 tolerated(0.95) benign(0) TCGA-85-8072-01 13 27216501 27216501 A T WASF3 Missense_Mutation p.S32C 0.06 tolerated(0.06) possibly_damaging(0.765) TCGA-85-8072-01 13 53420606 53420606 G A PCDH8 Nonsense_Mutation p.Q656* 0.23 TCGA-85-8072-01 13 78492382 78492382 G A EDNRB Silent p.C199C 0.34 TCGA-85-8072-01 14 106829618 106829618 G A IGHV4-34 Silent p.D115D 0.28 TCGA-85-8072-01 14 23778052 23778052 G T BCL2L2 Missense_Mutation p.G154W 0.35 deleterious(0.01) possibly_damaging(0.822) TCGA-85-8072-01 14 31597096 31597096 T C HECTD1 Missense_Mutation p.T1626A 0.15 tolerated(0.09) possibly_damaging(0.899) TCGA-85-8072-01 14 57698334 57698334 C G EXOC5 Missense_Mutation p.L346F 0.38 deleterious(0.01) probably_damaging(0.991) TCGA-85-8072-01 14 63747686 63747686 C T RHOJ Intron 0.29 TCGA-85-8072-01 14 63842814 63842814 T G PPP2R5E Missense_Mutation p.K439N 0.17 deleterious(0.01) probably_damaging(0.949) TCGA-85-8072-01 14 64445678 64445678 G T SYNE2 Missense_Mutation p.W505C 0.35 probably_damaging(0.999) TCGA-85-8072-01 14 74364778 74364778 G A ZNF410 Silent p.L148L 0.07 TCGA-85-8072-01 14 94139751 94139751 C A UNC79 Missense_Mutation p.L2093I 0.17 tolerated(0.13) probably_damaging(0.995) TCGA-85-8072-01 15 28422642 28422642 C T HERC2 Silent p.A3059A 0.15 TCGA-85-8072-01 15 35084465 35084465 G T ACTC1 Missense_Mutation p.R212S 0.19 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-85-8072-01 15 41222867 41222867 C A DLL4 Missense_Mutation p.D127E 0.20 tolerated(0.41) benign(0.007) TCGA-85-8072-01 15 42436300 42436300 C T PLA2G4F Missense_Mutation p.R673Q 0.25 tolerated(0.08) benign(0.001) TCGA-85-8072-01 15 48441478 48441478 C G MYEF2 Missense_Mutation p.G490A 0.53 tolerated(0.48) benign(0.004) TCGA-85-8072-01 15 62209821 62209821 T A VPS13C Missense_Mutation p.I2592F 0.65 tolerated(0.24) benign(0.197) TCGA-85-8072-01 15 69677133 69677133 C T PAQR5 Silent p.S99S 0.14 TCGA-85-8072-01 16 15829389 15829389 G T MYH11 Silent p.R1121R 0.27 TCGA-85-8072-01 16 2042908 2042908 C T SYNGR3 Silent p.T175T 0.16 TCGA-85-8072-01 16 27752071 27752071 G A KIAA0556 Missense_Mutation p.R818Q 0.28 tolerated(0.54) possibly_damaging(0.46) TCGA-85-8072-01 16 28877758 28877758 G T SH2B1 Missense_Mutation p.G115W 0.37 deleterious(0.01) possibly_damaging(0.892) TCGA-85-8072-01 16 31504988 31504988 G C C16orf58 Missense_Mutation p.H298Q 0.28 tolerated(0.18) benign(0.042) TCGA-85-8072-01 16 3633322 3633322 G T SLX4 Silent p.A1643A 0.28 TCGA-85-8072-01 16 3633323 3633323 G C SLX4 Missense_Mutation p.A1643G 0.29 tolerated(0.07) benign(0.079) TCGA-85-8072-01 16 55729283 55729283 C T SLC6A2 Silent p.H372H 0.23 TCGA-85-8072-01 16 55880395 55880395 G A CES5A Missense_Mutation p.L595F 0.39 tolerated_low_confidence(0.15) possibly_damaging(0.587) TCGA-85-8072-01 16 58320089 58320089 C G PRSS54 Missense_Mutation p.V92L 0.19 tolerated(0.34) benign(0.164) TCGA-85-8072-01 16 70057543 70057543 G A PDXDC2P RNA 0.20 TCGA-85-8072-01 16 70820187 70820187 C A VAC14 Silent p.L62L 0.35 TCGA-85-8072-01 17 11520886 11520886 C G DNAH9 Missense_Mutation p.P355A 0.14 possibly_damaging(0.536) TCGA-85-8072-01 17 11671869 11671869 C G DNAH9 Missense_Mutation p.P2424A 0.30 benign(0.014) TCGA-85-8072-01 17 11778397 11778397 C G DNAH9 Missense_Mutation p.N3458K 0.28 possibly_damaging(0.598) TCGA-85-8072-01 17 18785881 18785881 G T PRPSAP2 Missense_Mutation p.G138V 0.23 deleterious(0.03) possibly_damaging(0.866) TCGA-85-8072-01 17 20799089 20799099 CCAAGATCTTC - CCDC144NL Frame_Shift_Del p.E79Rfs*30 0.16 TCGA-85-8072-01 17 26696648 26696648 A G VTN Missense_Mutation p.S137P 0.23 tolerated(0.5) benign(0.001) TCGA-85-8072-01 17 33768987 33768987 C T SLFN13 Missense_Mutation p.G506E 0.10 tolerated(0.1) benign(0.107) TCGA-85-8072-01 17 40695892 40695892 A G NAGLU Missense_Mutation p.E623G 0.12 deleterious(0.02) benign(0.41) TCGA-85-8072-01 17 42456013 42456013 G A ITGA2B Silent p.S648S 0.25 TCGA-85-8072-01 17 45368499 45368499 C T ITGB3 Intron 0.17 TCGA-85-8072-01 17 46673783 46673783 C T HOXB6 Missense_Mutation p.A223T 0.25 tolerated_low_confidence(0.9) unknown(0) TCGA-85-8072-01 17 47696429 47696429 C T SPOP Missense_Mutation p.G132R 0.10 deleterious(0.02) probably_damaging(1) TCGA-85-8072-01 17 4802569 4802569 C T CHRNE Silent p.A381A 0.25 TCGA-85-8072-01 17 7577101 7577101 C A TP53 Silent p.G279G 0.24 TCGA-85-8072-01 17 7577102 7577102 C T TP53 Missense_Mutation p.G279E 0.22 deleterious(0) probably_damaging(0.999) TCGA-85-8072-01 17 7578475 7578475 G A TP53 Missense_Mutation p.P152L 0.27 tolerated(0.08) probably_damaging(0.91) TCGA-85-8072-01 17 79517984 79517984 G A C17orf70 Missense_Mutation p.T179M 0.10 tolerated(0.05) benign(0.044) TCGA-85-8072-01 18 10689742 10689742 C A PIEZO2 Missense_Mutation p.D2357Y 0.16 deleterious(0) benign(0.157) TCGA-85-8072-01 18 43328391 43328391 G T SLC14A1 Splice_Site p.X388_splice 0.18 TCGA-85-8072-01 18 77107832 77107832 G T ATP9B Missense_Mutation p.R915S 0.07 deleterious(0) benign(0.15) TCGA-85-8072-01 19 1428840 1428840 G - DAZAP1 Splice_Site p.X183_splice 0.28 TCGA-85-8072-01 19 19351414 19351414 T C NCAN Missense_Mutation p.F1138L 0.12 tolerated(0.3) probably_damaging(0.992) TCGA-85-8072-01 19 2223401 2223401 C G DOT1L Missense_Mutation p.P1171R 0.34 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-85-8072-01 19 2853611 2853611 T A ZNF555 Silent p.A516A 0.20 TCGA-85-8072-01 19 32844461 32844461 A T ZNF507 Missense_Mutation p.Y242F 0.05 tolerated(0.14) possibly_damaging(0.899) TCGA-85-8072-01 19 37677608 37677608 C G ZNF585B Missense_Mutation p.Q277H 0.04 deleterious(0) probably_damaging(0.992) TCGA-85-8072-01 19 37880176 37880176 A G ZNF527 Missense_Mutation p.T409A 0.63 deleterious(0) probably_damaging(0.996) TCGA-85-8072-01 19 44223218 44223218 G T IRGC Missense_Mutation p.V170L 0.63 deleterious(0.01) benign(0.338) TCGA-85-8072-01 19 8175835 8175835 C T FBN3 Silent p.A1409A 0.26 TCGA-85-8072-01 19 9868346 9868346 C A ZNF846 Missense_Mutation p.M469I 0.24 tolerated(0.88) benign(0.042) TCGA-85-8072-01 1 109801644 109801644 G A CELSR2 Missense_Mutation p.G1301R 0.20 deleterious(0.01) possibly_damaging(0.731) TCGA-85-8072-01 1 12837526 12837526 T A PRAMEF12 Silent p.P412P 0.44 TCGA-85-8072-01 1 146756069 146756069 C T CHD1L Missense_Mutation p.P584L 0.14 deleterious(0.01) possibly_damaging(0.703) TCGA-85-8072-01 1 149943052 149943052 A G OTUD7B Silent p.S71S 0.39 TCGA-85-8072-01 1 152283700 152283700 C T FLG Missense_Mutation p.R1221H 0.05 possibly_damaging(0.522) TCGA-85-8072-01 1 155309119 155309119 C T ASH1L Missense_Mutation p.R2834Q 0.05 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-85-8072-01 1 155449598 155449598 C A ASH1L Silent p.T1021T 0.36 TCGA-85-8072-01 1 156849833 156849833 G T NTRK1 Nonsense_Mutation p.E697* 0.37 TCGA-85-8072-01 1 158390512 158390512 T C OR10K2 Missense_Mutation p.I49V 0.07 tolerated(0.06) benign(0.032) TCGA-85-8072-01 1 158651357 158651357 A G SPTA1 Missense_Mutation p.V164A 0.03 tolerated(0.16) benign(0.045) TCGA-85-8072-01 1 161599798 161599798 A T FCGR3B Missense_Mutation p.L66Q 0.59 deleterious(0) probably_damaging(0.998) TCGA-85-8072-01 1 216380658 216380658 C G USH2A Missense_Mutation p.R1091S 0.18 probably_damaging(0.998) TCGA-85-8072-01 1 21808115 21808115 G A NBPF3 Missense_Mutation p.V487I 0.09 tolerated(0.16) benign(0.023) TCGA-85-8072-01 1 226252068 226252068 C T H3F3A Nonsense_Mutation p.Q6* 0.16 TCGA-85-8072-01 1 227219011 227219011 C G CDC42BPA Missense_Mutation p.A1220P 0.10 deleterious(0) probably_damaging(0.997) TCGA-85-8072-01 1 23759678 23759678 G T ASAP3 Missense_Mutation p.L739M 0.11 tolerated(0.14) possibly_damaging(0.714) TCGA-85-8072-01 1 247597504 247597504 C G NLRP3 Silent p.A809A 0.41 TCGA-85-8072-01 1 247615108 247615108 G T OR2B11 Silent p.L59L 0.27 TCGA-85-8072-01 1 248487560 248487560 T A OR2M7 Missense_Mutation p.Y104F 0.29 tolerated(0.69) benign(0.039) TCGA-85-8072-01 1 34498291 34498291 G A CSMD2 Silent p.L101L 0.23 TCGA-85-8072-01 1 48695097 48695097 T C SLC5A9 Missense_Mutation p.L182P 0.56 deleterious(0.01) benign(0.25) TCGA-85-8072-01 1 55148460 55148460 C T MROH7 Missense_Mutation p.P838L 0.09 deleterious(0) probably_damaging(0.995) TCGA-85-8072-01 1 57340642 57340642 G A C8A Silent p.L64L 0.27 TCGA-85-8072-01 1 75038708 75038708 C - C1orf173 Frame_Shift_Del p.E896Nfs*4 0.31 TCGA-85-8072-01 1 7806012 7806012 C T CAMTA1 Missense_Mutation p.A1493V 0.46 deleterious(0.03) possibly_damaging(0.453) TCGA-85-8072-01 20 13107256 13107256 C T SPTLC3 Missense_Mutation p.R391W 0.03 deleterious(0) probably_damaging(0.971) TCGA-85-8072-01 20 21494192 21494192 G A NKX2-2 Missense_Mutation p.P39L 0.43 tolerated(0.17) benign(0.002) TCGA-85-8072-01 20 2775076 2775076 C T CPXM1 Silent p.A655A 0.11 TCGA-85-8072-01 20 35431477 35431477 G A SOGA1 Missense_Mutation p.R1041W 0.17 deleterious(0.01) probably_damaging(0.982) TCGA-85-8072-01 20 3678610 3678610 A G SIGLEC1 Missense_Mutation p.C653R 0.20 tolerated(0.21) probably_damaging(0.999) TCGA-85-8072-01 20 44856189 44856189 C T CDH22 Missense_Mutation p.V210M 0.29 deleterious(0.04) benign(0.061) TCGA-85-8072-01 20 50049038 50049038 A T NFATC2 Missense_Mutation p.L763Q 0.39 tolerated(0.06) probably_damaging(0.993) TCGA-85-8072-01 20 61510886 61510886 T C DIDO1 Missense_Mutation p.K2141R 0.15 benign(0.006) TCGA-85-8072-01 20 61943837 61943837 T G COL20A1 Silent p.T623T 0.27 TCGA-85-8072-01 20 62839299 62839299 G T MYT1 Missense_Mutation p.K250N 0.37 benign(0.05) TCGA-85-8072-01 21 14982958 14982958 C A POTED Silent p.R137R 0.37 TCGA-85-8072-01 21 22746276 22746276 T A NCAM2 Missense_Mutation p.C380S 0.47 deleterious(0) probably_damaging(0.999) TCGA-85-8072-01 21 45535278 45535278 G T PWP2 Missense_Mutation p.D202Y 0.49 deleterious(0) probably_damaging(0.986) TCGA-85-8072-01 22 18894094 18894094 T C DGCR6 Silent p.L43L 0.10 TCGA-85-8072-01 22 23101429 23101429 C A IGLV2-14 Missense_Mutation p.S28Y 0.26 deleterious_low_confidence(0) possibly_damaging(0.794) TCGA-85-8072-01 22 23101430 23101430 C A IGLV2-14 Silent p.S28S 0.27 TCGA-85-8072-01 22 37261113 37261113 A C NCF4 Silent p.P90P 0.30 TCGA-85-8072-01 22 38234527 38234527 C A ANKRD54 Missense_Mutation p.C152F 0.11 deleterious(0.04) probably_damaging(0.996) TCGA-85-8072-01 22 50278410 50278410 G A ZBED4 Missense_Mutation p.G367E 0.14 tolerated(0.09) possibly_damaging(0.548) TCGA-85-8072-01 2 101012005 101012005 G C CHST10 Missense_Mutation p.L167V 0.19 deleterious(0.03) probably_damaging(0.966) TCGA-85-8072-01 2 105708862 105708862 A T MRPS9 Missense_Mutation p.M219L 0.28 tolerated(0.33) benign(0) TCGA-85-8072-01 2 135095892 135095892 G T MGAT5 Silent p.R236R 0.21 TCGA-85-8072-01 2 155566291 155566291 C A KCNJ3 Missense_Mutation p.F293L 0.27 deleterious(0.05) probably_damaging(0.999) TCGA-85-8072-01 2 158114816 158114816 G A GALNT5 Missense_Mutation p.M74I 0.12 tolerated(0.49) benign(0.003) TCGA-85-8072-01 2 163693045 163693045 A C KCNH7 Splice_Site p.X103_splice 0.37 TCGA-85-8072-01 2 179465721 179465721 C T TTN Missense_Mutation p.R18637H 0.64 TCGA-85-8072-01 2 179481599 179481599 C G TTN Missense_Mutation p.G16006A 0.09 TCGA-85-8072-01 2 179590301 179590301 A C TTN Missense_Mutation p.I6877R 0.74 TCGA-85-8072-01 2 179595458 179595458 A G TTN Silent p.S5934S 0.16 TCGA-85-8072-01 2 179647004 179647004 A T TTN Silent p.V1105V 0.06 TCGA-85-8072-01 2 182543512 182543512 A C NEUROD1 Missense_Mutation p.C26G 0.27 tolerated(0.65) probably_damaging(0.969) TCGA-85-8072-01 2 206480308 206480308 C G PARD3B Missense_Mutation p.T1068R 0.05 tolerated(0.38) benign(0.001) TCGA-85-8072-01 2 206869813 206869813 T A INO80D Missense_Mutation p.H788L 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.743) TCGA-85-8072-01 2 220402772 220402772 G A ASIC4 3'UTR 0.27 TCGA-85-8072-01 2 235404673 235404673 G C ARL4C Silent p.L186L 0.30 TCGA-85-8072-01 2 56145366 56145366 G C EFEMP1 Missense_Mutation p.Q40E 0.04 tolerated(0.51) benign(0.022) TCGA-85-8072-01 2 71827949 71827949 T C DYSF Missense_Mutation p.F1292L 0.05 deleterious(0.04) benign(0.373) TCGA-85-8072-01 2 8931348 8931348 A G KIDINS220 Missense_Mutation p.L428S 0.17 deleterious(0) probably_damaging(0.998) TCGA-85-8072-01 3 10443965 10443965 G A ATP2B2 Silent p.A155A 0.05 TCGA-85-8072-01 3 108363241 108363241 G T DZIP3 Nonsense_Mutation p.E458* 0.45 TCGA-85-8072-01 3 108476100 108476100 G T RETNLB 5'UTR 0.33 TCGA-85-8072-01 3 109027016 109027016 G T DPPA2 Missense_Mutation p.T174K 0.26 tolerated(0.05) benign(0.096) TCGA-85-8072-01 3 126180754 126180754 A G ZXDC Missense_Mutation p.L584P 0.04 deleterious(0.03) probably_damaging(0.987) TCGA-85-8072-01 3 12857433 12857433 G A CAND2 Missense_Mutation p.C456Y 0.62 deleterious(0) probably_damaging(0.999) TCGA-85-8072-01 3 134322918 134322918 G T KY Missense_Mutation p.H497N 0.21 deleterious(0.05) possibly_damaging(0.84) TCGA-85-8072-01 3 13441258 13441258 G A NUP210 Missense_Mutation p.R91C 0.53 deleterious(0.04) probably_damaging(0.998) TCGA-85-8072-01 3 142681524 142681524 C A PAQR9 Missense_Mutation p.V219L 0.51 tolerated(0.69) benign(0.099) TCGA-85-8072-01 3 151474968 151474971 GAGA C AADACL2 In_Frame_Del p.M264_R265delinsI 0.14 TCGA-85-8072-01 3 158408040 158408040 A T GFM1 Silent p.A666A 0.53 TCGA-85-8072-01 3 47890145 47890145 C T DHX30 Silent p.T869T 0.11 TCGA-85-8072-01 4 100131246 100131246 G T ADH6 Missense_Mutation p.T187N 0.20 deleterious(0.02) possibly_damaging(0.576) TCGA-85-8072-01 4 115997903 115997903 G T NDST4 Missense_Mutation p.A97D 0.32 tolerated(0.15) possibly_damaging(0.8) TCGA-85-8072-01 4 144459940 144459940 A G SMARCA5 Missense_Mutation p.D540G 0.33 tolerated(0.34) benign(0.005) TCGA-85-8072-01 4 156634569 156634569 G T GUCY1A3 Missense_Mutation p.G469V 0.36 deleterious(0) probably_damaging(0.988) TCGA-85-8072-01 4 183245177 183245177 G T TENM3 Missense_Mutation p.D2Y 0.31 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-85-8072-01 4 46967124 46967124 C G GABRA4 Missense_Mutation p.A333P 0.21 deleterious(0) probably_damaging(1) TCGA-85-8072-01 4 70066271 70066271 C T UGT2B11 Missense_Mutation p.V493M 0.13 deleterious(0) probably_damaging(1) TCGA-85-8072-01 5 140255344 140255344 G A PCDHA12 Missense_Mutation p.C96Y 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-85-8072-01 5 140740046 140740046 A G PCDHGB2 Missense_Mutation p.N115S 0.33 tolerated(0.08) benign(0.176) TCGA-85-8072-01 5 150275602 150275602 T C ZNF300 Missense_Mutation p.H416R 0.09 tolerated(0.07) probably_damaging(0.956) TCGA-85-8072-01 5 176011232 176011232 C T CDHR2 Silent p.Y700Y 0.15 TCGA-85-8072-01 5 176963723 176963723 G A FAM193B Missense_Mutation p.H238Y 0.40 deleterious(0.04) benign(0.009) TCGA-85-8072-01 5 57790613 57790613 G C GAPT Missense_Mutation p.V84L 0.17 tolerated(0.33) benign(0.13) TCGA-85-8072-01 5 64920029 64920029 C T TRIM23 Missense_Mutation p.V25I 0.15 tolerated(0.52) benign(0.004) TCGA-85-8072-01 5 76734136 76734136 C T WDR41 Missense_Mutation p.M311I 0.17 tolerated(0.06) benign(0.016) TCGA-85-8072-01 5 80171677 80171677 A T MSH3 Missense_Mutation p.H1137L 0.19 deleterious_low_confidence(0) benign(0.037) TCGA-85-8072-01 6 111587802 111587802 A G KIAA1919 Missense_Mutation p.Q346R 0.31 tolerated(0.08) benign(0.106) TCGA-85-8072-01 6 166571767 166571767 A C T 3'UTR 0.06 TCGA-85-8072-01 6 25820105 25820105 G A SLC17A1 Silent p.I82I 0.08 TCGA-85-8072-01 6 26123919 26123919 C G HIST1H2BC Missense_Mutation p.E72Q 0.03 deleterious_low_confidence(0.02) benign(0.213) TCGA-85-8072-01 6 26189210 26189210 T C HIST1H4D Missense_Mutation p.K32R 0.16 deleterious(0) possibly_damaging(0.498) TCGA-85-8072-01 6 29054704 29054704 C A OR2B3 Missense_Mutation p.G108C 0.06 deleterious(0) probably_damaging(1) TCGA-85-8072-01 6 35911997 35911997 C T SLC26A8 Missense_Mutation p.E865K 0.04 tolerated_low_confidence(0.11) benign(0.029) TCGA-85-8072-01 6 39893483 39893483 G T MOCS1 Silent p.I119I 0.37 TCGA-85-8072-01 6 45909379 45909379 A T CLIC5 Missense_Mutation p.L263Q 0.34 deleterious(0) probably_damaging(1) TCGA-85-8072-01 6 51777305 51777305 A G PKHD1 Missense_Mutation p.L2064S 0.30 deleterious(0) probably_damaging(0.994) TCGA-85-8072-01 6 56496078 56496078 C T DST Missense_Mutation p.R821Q 0.27 possibly_damaging(0.898) TCGA-85-8072-01 6 75833079 75833079 G A COL12A1 Missense_Mutation p.P2305S 0.23 benign(0.009) TCGA-85-8072-01 6 90661382 90661382 G A BACH2 Missense_Mutation p.A148V 0.20 tolerated(0.55) benign(0.038) TCGA-85-8072-01 6 90661513 90661513 T G BACH2 Missense_Mutation p.E104D 0.17 tolerated(0.6) benign(0.016) TCGA-85-8072-01 7 123594481 123594481 T A SPAM1 Missense_Mutation p.I286N 0.17 deleterious(0) probably_damaging(0.972) TCGA-85-8072-01 7 134642998 134642998 C G CALD1 Missense_Mutation p.S673C 0.04 deleterious(0.03) probably_damaging(0.963) TCGA-85-8072-01 7 143017806 143017806 C G CLCN1 Missense_Mutation p.D117E 0.45 deleterious(0.02) probably_damaging(0.995) TCGA-85-8072-01 7 143632675 143632675 T C OR2F2 Missense_Mutation p.V117A 0.50 tolerated(0.49) benign(0.297) TCGA-85-8072-01 7 147869565 147869565 A G CNTNAP2 Missense_Mutation p.N1002S 0.44 tolerated(0.96) benign(0.016) TCGA-85-8072-01 7 151859903 151859903 G A KMT2C Nonsense_Mutation p.Q3587* 0.42 TCGA-85-8072-01 7 31132309 31132309 C T ADCYAP1R1 Nonsense_Mutation p.Q336* 0.16 TCGA-85-8072-01 7 37988593 37988593 G T EPDR1 Missense_Mutation p.G141W 0.28 deleterious(0) probably_damaging(0.999) TCGA-85-8072-01 7 45697378 45697378 A G ADCY1 Missense_Mutation p.T401A 0.50 deleterious(0.01) possibly_damaging(0.547) TCGA-85-8072-01 7 45753444 45753444 G T ADCY1 Missense_Mutation p.L1070F 0.05 deleterious_low_confidence(0.04) benign(0.11) TCGA-85-8072-01 7 74563977 74563977 A G GTF2IRD2B Missense_Mutation p.D575G 0.23 tolerated(0.09) probably_damaging(0.968) TCGA-85-8072-01 7 92760776 92760776 T C SAMD9L Silent p.T1503T 0.41 TCGA-85-8072-01 8 104922551 104922551 G A RIMS2 Intron 0.24 TCGA-85-8072-01 8 125113493 125113493 C G FER1L6 Missense_Mutation p.S1680C 0.36 deleterious(0) probably_damaging(1) TCGA-85-8072-01 8 131848550 131848550 C T ADCY8 Missense_Mutation p.R883H 0.20 tolerated(0.11) benign(0.001) TCGA-85-8072-01 8 132052108 132052108 G A ADCY8 Missense_Mutation p.R158C 0.21 deleterious(0.03) probably_damaging(0.929) TCGA-85-8072-01 8 139144922 139144922 C A FAM135B Missense_Mutation p.G1379C 0.23 deleterious(0) probably_damaging(1) TCGA-85-8072-01 8 139703108 139703108 C T COL22A1 Missense_Mutation p.G922R 0.31 unknown(0) TCGA-85-8072-01 8 144891151 144891151 G A SCRIB Silent p.D581D 0.06 TCGA-85-8072-01 8 146156245 146156245 A T ZNF16 Missense_Mutation p.V643D 0.29 tolerated(0.63) benign(0.021) TCGA-85-8072-01 8 39821181 39821181 C T IDO2 Nonsense_Mutation p.Q65* 0.33 TCGA-85-8072-01 8 39836660 39836660 C A IDO2 Silent p.L103L 0.33 TCGA-85-8072-01 8 69032461 69032461 C A PREX2 Missense_Mutation p.Q1179K 0.07 tolerated(0.25) benign(0.002) TCGA-85-8072-01 8 69046434 69046434 G T PREX2 Missense_Mutation p.A1303S 0.19 tolerated(0.07) probably_damaging(0.985) TCGA-85-8072-01 9 107599761 107599761 C T ABCA1 Missense_Mutation p.G381E 0.05 deleterious(0) probably_damaging(0.946) TCGA-85-8072-01 9 107602773 107602773 T C ABCA1 Missense_Mutation p.M281V 0.27 deleterious(0.03) benign(0.005) TCGA-85-8072-01 9 123007295 123007295 T A MIR147A RNA 0.24 TCGA-85-8072-01 9 135985093 135985093 G A RALGDS Silent p.D168D 0.12 TCGA-85-8072-01 9 138651556 138651556 G A KCNT1 Missense_Mutation p.G296S 0.04 tolerated(0.16) probably_damaging(0.922) TCGA-85-8072-01 X 103499456 103499456 T C ESX1 Silent p.E25E 0.05 TCGA-85-8072-01 X 152160165 152160165 A T PNMA5 5'UTR 0.57 TCGA-85-8072-01 X 18622455 18622455 G C CDKL5 Missense_Mutation p.D471H 0.63 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-85-8072-01 X 84363532 84363532 C T SATL1 Missense_Mutation p.G148E 0.50 tolerated(0.63) benign(0) TCGA-85-8276-01 10 101590118 101590118 A T ABCC2 Missense_Mutation p.E892V 0.29 tolerated(0.06) possibly_damaging(0.735) TCGA-85-8276-01 10 124672376 124672376 C A FAM24A Missense_Mutation p.S75Y 0.04 deleterious(0.01) probably_damaging(0.991) TCGA-85-8276-01 10 128076676 128076676 G T ADAM12 Silent p.A13A 0.28 TCGA-85-8276-01 10 129868657 129868657 G C PTPRE Missense_Mutation p.Q412H 0.10 tolerated(0.13) probably_damaging(0.997) TCGA-85-8276-01 10 1569024 1569024 G A ADARB2 Intron 0.31 TCGA-85-8276-01 10 31809213 31809213 C A ZEB1 Nonsense_Mutation p.S318* 0.18 TCGA-85-8276-01 10 323271 323271 G A DIP2C Silent p.N1555N 0.24 TCGA-85-8276-01 10 47929806 47929806 C - FAM21B Frame_Shift_Del p.Q597Rfs*55 0.24 TCGA-85-8276-01 10 51592555 51592555 T C TIMM23 Silent p.L193L 0.11 TCGA-85-8276-01 10 81070882 81070882 G A ZMIZ1 Missense_Mutation p.A1013T 0.12 benign(0.039) TCGA-85-8276-01 10 88718575 88718575 G A SNCG Missense_Mutation p.G41R 0.15 deleterious(0) probably_damaging(1) TCGA-85-8276-01 10 91143169 91143169 T A IFIT1B Silent p.P33P 0.10 TCGA-85-8276-01 10 97919495 97919495 C T ZNF518A RNA 0.15 TCGA-85-8276-01 11 123677039 123677039 C T OR6M1 Missense_Mutation p.V7M 0.20 deleterious(0.05) benign(0.153) TCGA-85-8276-01 11 124179940 124179940 G T OR8D1 Nonsense_Mutation p.C241* 0.19 TCGA-85-8276-01 11 124412855 124412855 G A OR8B12 Silent p.G232G 0.17 TCGA-85-8276-01 11 1264737 1264737 G T MUC5B Silent p.T2209T 0.31 TCGA-85-8276-01 11 1267428 1267514 CACAGTGCTGACCACGAAGGCCACCACGACAAGGGCCACCAGTTCCATGTCCACCCCCTCCTCCACTCCGGGGACGACCTGGATCCT - MUC5B In_Frame_Del p.V3108_T3136del 0.11 TCGA-85-8276-01 11 1268508 1268508 G T MUC5B Silent p.T3466T 0.10 TCGA-85-8276-01 11 22849390 22849390 C A SVIP Missense_Mutation p.A29S 0.15 deleterious(0) probably_damaging(0.99) TCGA-85-8276-01 11 46791641 46791641 G C CKAP5 Missense_Mutation p.S1065C 0.22 deleterious(0) probably_damaging(0.954) TCGA-85-8276-01 11 48346971 48346971 T C OR4C3 Missense_Mutation p.I160T 0.14 tolerated(0.13) benign(0.009) TCGA-85-8276-01 11 49208248 49208248 C A FOLH1 Missense_Mutation p.C196F 0.12 tolerated(0.07) probably_damaging(0.99) TCGA-85-8276-01 11 5274501 5274501 G T HBG2 3'UTR 0.31 TCGA-85-8276-01 11 5364032 5364032 G T OR51B5 Silent p.S241S 0.22 TCGA-85-8276-01 11 56467958 56467958 G T OR9G1 Missense_Mutation p.G32V 0.10 tolerated(0.53) benign(0.003) TCGA-85-8276-01 11 62782246 62782246 A G SLC22A8 Missense_Mutation p.L62P 0.07 tolerated(0.09) benign(0.009) TCGA-85-8276-01 11 7021122 7021122 G T ZNF214 Missense_Mutation p.H598N 0.26 deleterious(0.04) benign(0.011) TCGA-85-8276-01 11 74915686 74915686 T C SLCO2B1 3'UTR 0.25 TCGA-85-8276-01 11 82693306 82693306 G A RAB30 Silent p.I171I 0.05 TCGA-85-8276-01 12 10124135 10124135 G T CLEC12A Intron 0.17 TCGA-85-8276-01 12 101504299 101504299 G T ANO4 Missense_Mutation p.W721L 0.23 tolerated(0.2) probably_damaging(0.999) TCGA-85-8276-01 12 10978060 10978060 G T TAS2R10 Missense_Mutation p.P270H 0.18 deleterious(0) probably_damaging(1) TCGA-85-8276-01 12 109889409 109889409 G A KCTD10 Silent p.L311L 0.17 TCGA-85-8276-01 12 111885879 111885879 C T SH2B3 Missense_Mutation p.L501F 0.15 tolerated(0.21) probably_damaging(0.999) TCGA-85-8276-01 12 112471170 112471170 G A NAA25 Missense_Mutation p.T888I 0.18 tolerated(0.14) benign(0.075) TCGA-85-8276-01 12 113770673 113770673 C T SLC8B1 Missense_Mutation p.R4K 0.19 tolerated_low_confidence(0.56) benign(0.07) TCGA-85-8276-01 12 123201347 123201347 T G HCAR3 5'UTR 0.25 TCGA-85-8276-01 12 123351713 123351713 T C VPS37B Missense_Mutation p.R270G 0.22 deleterious(0.03) probably_damaging(0.966) TCGA-85-8276-01 12 124330597 124330597 C T DNAH10 Missense_Mutation p.R1786C 0.09 possibly_damaging(0.836) TCGA-85-8276-01 12 131285830 131285830 T A STX2 Silent p.I181I 0.18 TCGA-85-8276-01 12 133373126 133373126 T A GOLGA3 Missense_Mutation p.Q700L 0.19 deleterious(0.01) possibly_damaging(0.575) TCGA-85-8276-01 12 20833204 20833204 G T PDE3A Nonstop_Mutation p.*1142Lext*25 0.13 TCGA-85-8276-01 12 21011495 21011495 T C LST3 Missense_Mutation p.F117L 0.21 deleterious(0.01) possibly_damaging(0.685) TCGA-85-8276-01 12 29446355 29446355 T C FAR2 Silent p.C104C 0.29 TCGA-85-8276-01 12 54367235 54367235 C G HOXC11 Silent p.V70V 0.21 TCGA-85-8276-01 12 55420887 55420887 C T NEUROD4 Missense_Mutation p.L222F 0.21 tolerated(0.58) benign(0.045) TCGA-85-8276-01 12 56490388 56490388 C T ERBB3 Silent p.V719V 0.07 TCGA-85-8276-01 12 7640643 7640643 A G CD163 Silent p.C487C 0.19 TCGA-85-8276-01 12 80752469 80752469 G C OTOGL Missense_Mutation p.C2038S 0.31 deleterious(0) possibly_damaging(0.632) TCGA-85-8276-01 12 82748356 82748356 T A CCDC59 Missense_Mutation p.K161M 0.40 tolerated(0.05) possibly_damaging(0.544) TCGA-85-8276-01 12 91358018 91358018 C T EPYC Missense_Mutation p.R295Q 0.21 deleterious(0) possibly_damaging(0.73) TCGA-85-8276-01 12 91358028 91358028 C G EPYC Missense_Mutation p.E292Q 0.24 deleterious(0.03) possibly_damaging(0.54) TCGA-85-8276-01 12 97328957 97328957 C T NEDD1 Silent p.I238I 0.27 TCGA-85-8276-01 13 100523221 100523221 G A CLYBL Missense_Mutation p.A278T 0.11 tolerated(0.27) benign(0.009) TCGA-85-8276-01 13 113834358 113834358 T A PCID2 Splice_Site p.X341_splice 0.16 TCGA-85-8276-01 13 114203801 114203801 G T TMCO3 Missense_Mutation p.R661I 0.11 deleterious(0) probably_damaging(0.938) TCGA-85-8276-01 13 36050393 36050393 G C MAB21L1 5'UTR 0.29 TCGA-85-8276-01 13 39262845 39262845 G T FREM2 Missense_Mutation p.R455L 0.28 deleterious(0) possibly_damaging(0.689) TCGA-85-8276-01 13 98655241 98655241 G T IPO5 Missense_Mutation p.D501Y 0.21 deleterious(0) possibly_damaging(0.866) TCGA-85-8276-01 14 106209238 106209238 T C IGHG1 Silent p.L57L 0.30 TCGA-85-8276-01 14 19377640 19377640 A C OR11H12 Missense_Mutation p.E16A 0.21 tolerated(0.43) benign(0.002) TCGA-85-8276-01 14 20666363 20666363 A T OR11G2 Missense_Mutation p.Y290F 0.07 tolerated(0.21) possibly_damaging(0.571) TCGA-85-8276-01 14 24911575 24911575 G A SDR39U1 Missense_Mutation p.P34S 0.16 deleterious(0.03) benign(0.056) TCGA-85-8276-01 14 36008695 36008695 C A RALGAPA1 3'UTR 0.34 TCGA-85-8276-01 14 38723901 38723901 G T CLEC14A Missense_Mutation p.L443M 0.44 tolerated(0.14) benign(0.012) TCGA-85-8276-01 14 50146458 50146458 G C POLE2 Missense_Mutation p.S77C 0.07 deleterious(0.03) benign(0.345) TCGA-85-8276-01 14 58471435 58471435 A C C14orf37 3'UTR 0.19 TCGA-85-8276-01 14 69256923 69256923 T C ZFP36L1 Missense_Mutation p.Y115C 0.29 deleterious(0) probably_damaging(0.998) TCGA-85-8276-01 14 70235834 70235834 C G SRSF5 Intron 0.20 TCGA-85-8276-01 14 99642511 99642511 T C BCL11B Missense_Mutation p.Y221C 0.28 deleterious(0) probably_damaging(0.999) TCGA-85-8276-01 15 22368631 22368631 A G OR4M2 Missense_Mutation p.Q19R 0.05 tolerated(0.06) benign(0.118) TCGA-85-8276-01 15 23931845 23931845 C A NDN Nonsense_Mutation p.E174* 0.21 TCGA-85-8276-01 15 25959234 25959234 G T ATP10A Missense_Mutation p.T644N 0.08 tolerated(0.14) benign(0.008) TCGA-85-8276-01 15 33945022 33945022 G T RYR3 Missense_Mutation p.D1416Y 0.10 probably_damaging(0.999) TCGA-85-8276-01 15 43020408 43020408 C G CDAN1 Silent p.P954P 0.36 TCGA-85-8276-01 15 43525409 43525409 A T TGM5 Missense_Mutation p.Y715N 0.32 tolerated(0.3) benign(0.009) TCGA-85-8276-01 15 51791899 51791899 T C DMXL2 Silent p.V1174V 0.12 TCGA-85-8276-01 15 53905951 53905951 A T WDR72 Silent p.S928S 0.12 TCGA-85-8276-01 15 63940298 63940298 T A HERC1 Missense_Mutation p.K3616N 0.23 benign(0.004) TCGA-85-8276-01 15 64980943 64980943 A G OAZ2 Missense_Mutation p.M177T 0.36 deleterious(0) probably_damaging(1) TCGA-85-8276-01 15 69721549 69721549 G A KIF23 Missense_Mutation p.A357T 0.06 deleterious(0) probably_damaging(0.998) TCGA-85-8276-01 15 73615769 73615769 A C HCN4 Missense_Mutation p.S889A 0.48 tolerated_low_confidence(0.59) unknown(0) TCGA-85-8276-01 15 76496121 76496121 C A C15orf27 Missense_Mutation p.T354K 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-85-8276-01 15 77764139 77764139 G T HMG20A Missense_Mutation p.A200S 0.08 tolerated(0.65) benign(0.004) TCGA-85-8276-01 15 80767527 80767527 G C ARNT2 Silent p.L195L 0.15 TCGA-85-8276-01 15 83687497 83687497 G A BTBD1 Silent p.L418L 0.07 TCGA-85-8276-01 16 1877896 1877896 A T FAHD1 Intron 0.17 TCGA-85-8276-01 16 22343380 22343380 G T POLR3E Splice_Site p.X649_splice 0.17 TCGA-85-8276-01 16 2329017 2329017 C T ABCA3 Missense_Mutation p.G1492R 0.19 tolerated(0.5) benign(0.009) TCGA-85-8276-01 16 27374253 27374253 A G IL4R Missense_Mutation p.E527G 0.21 deleterious(0.03) benign(0.002) TCGA-85-8276-01 16 3786818 3786818 T A CREBBP Splice_Site p.X1465_splice 0.26 TCGA-85-8276-01 16 50733697 50733697 C T NOD2 Silent p.D124D 0.15 TCGA-85-8276-01 16 50745896 50745896 G A NOD2 Missense_Mutation p.E692K 0.26 tolerated(0.24) benign(0.006) TCGA-85-8276-01 16 53860121 53860121 C G FTO Missense_Mutation p.L157V 0.09 tolerated(0.31) probably_damaging(0.983) TCGA-85-8276-01 16 55613151 55613151 C T LPCAT2 Missense_Mutation p.S482F 0.25 deleterious(0) possibly_damaging(0.866) TCGA-85-8276-01 16 55890340 55890340 G A CES5A Silent p.I387I 0.05 TCGA-85-8276-01 16 65038625 65038625 G T CDH11 Missense_Mutation p.R50S 0.16 deleterious(0) benign(0.389) TCGA-85-8276-01 16 69481066 69481067 - AG CYB5B Frame_Shift_Ins p.V65Rfs*9 0.17 TCGA-85-8276-01 16 77331308 77331308 G A ADAMTS18 Silent p.Y893Y 0.25 TCGA-85-8276-01 16 8998318 8998318 C T USP7 Missense_Mutation p.E560K 0.28 deleterious(0) probably_damaging(0.964) TCGA-85-8276-01 17 18916768 18916768 G A SLC5A10 Missense_Mutation p.G359E 0.16 deleterious(0.01) probably_damaging(1) TCGA-85-8276-01 17 26687564 26687564 G A TMEM199 Missense_Mutation p.G130S 0.20 tolerated(0.65) benign(0.016) TCGA-85-8276-01 17 26687565 26687565 G T TMEM199 Missense_Mutation p.G130V 0.20 tolerated(0.43) benign(0.309) TCGA-85-8276-01 17 29559731 29559731 T G NF1 Missense_Mutation p.F1110V 0.22 deleterious(0) probably_damaging(0.942) TCGA-85-8276-01 17 29632224 29632224 G A EVI2B Missense_Mutation p.T135I 0.23 deleterious(0.04) probably_damaging(0.934) TCGA-85-8276-01 17 4016063 4016063 G T ZZEF1 Silent p.S302S 0.15 TCGA-85-8276-01 17 42478321 42478322 - A GPATCH8 Frame_Shift_Ins p.S375Ffs*18 0.16 TCGA-85-8276-01 17 61973932 61973932 C T CSH1 5'UTR 0.17 TCGA-85-8276-01 17 62226417 62226417 T C TEX2 Missense_Mutation p.Y1106C 0.19 deleterious(0) benign(0.236) TCGA-85-8276-01 17 72351409 72351409 C T KIF19 Silent p.G985G 0.21 TCGA-85-8276-01 17 74340755 74340755 G A PRPSAP1 Missense_Mutation p.P96L 0.16 tolerated(0.31) benign(0.062) TCGA-85-8276-01 17 74533553 74533553 C G CYGB Missense_Mutation p.R24S 0.19 tolerated(0.15) benign(0.236) TCGA-85-8276-01 17 7478459 7478459 C T EIF4A1 Silent p.A76A 0.23 TCGA-85-8276-01 17 75212636 75212636 G T SEC14L1 Missense_Mutation p.R717L 0.20 tolerated_low_confidence(0.13) benign(0.014) TCGA-85-8276-01 17 75212637 75212637 A G SEC14L1 Silent p.R717R 0.20 TCGA-85-8276-01 17 79536118 79536118 T A NPLOC4 Missense_Mutation p.K458M 0.19 tolerated(0.13) probably_damaging(0.915) TCGA-85-8276-01 17 8053306 8053306 C A PER1 Missense_Mutation p.C171F 0.30 deleterious(0) probably_damaging(0.999) TCGA-85-8276-01 17 9532081 9532081 C T WDR16 Missense_Mutation p.P373L 0.25 deleterious(0) probably_damaging(0.951) TCGA-85-8276-01 17 9808457 9808457 A T RCVRN Missense_Mutation p.L14Q 0.14 deleterious(0) probably_damaging(1) TCGA-85-8276-01 18 14851639 14851639 T C ANKRD30B Silent p.F1113F 0.49 TCGA-85-8276-01 18 18533550 18533550 A G ROCK1 Silent p.S1350S 0.17 TCGA-85-8276-01 18 23872319 23872319 T A TAF4B Missense_Mutation p.I567K 0.06 deleterious(0.02) benign(0.021) TCGA-85-8276-01 18 59928857 59928857 A G KIAA1468 Silent p.K772K 0.18 TCGA-85-8276-01 18 65179786 65179786 A G DSEL Missense_Mutation p.I697T 0.21 tolerated(0.17) benign(0.046) TCGA-85-8276-01 18 77246302 77246302 G T NFATC1 Missense_Mutation p.G703V 0.24 tolerated(0.14) benign(0.027) TCGA-85-8276-01 19 10939862 10939862 G C DNM2 Missense_Mutation p.G737R 0.16 deleterious(0.01) possibly_damaging(0.61) TCGA-85-8276-01 19 17100546 17100546 C T CPAMD8 Silent p.G481G 0.24 TCGA-85-8276-01 19 21606247 21606247 G A ZNF493 Silent p.Q262Q 0.10 TCGA-85-8276-01 19 22157569 22157569 C A ZNF208 Missense_Mutation p.Q89H 0.12 deleterious(0.03) probably_damaging(0.949) TCGA-85-8276-01 19 2291301 2291301 C T LINGO3 Missense_Mutation p.D159N 0.16 deleterious(0.04) probably_damaging(0.947) TCGA-85-8276-01 19 23329578 23329578 A G ZNF730 3'UTR 0.22 TCGA-85-8276-01 19 36269501 36269501 C T ARHGAP33 Nonsense_Mutation p.Q136* 0.15 TCGA-85-8276-01 19 38976418 38976418 C T RYR1 Missense_Mutation p.A1708V 0.07 possibly_damaging(0.718) TCGA-85-8276-01 19 39207732 39207732 G T ACTN4 Nonsense_Mutation p.E307* 0.17 TCGA-85-8276-01 19 46270243 46270243 C A SIX5 Missense_Mutation p.G325V 0.30 deleterious(0) probably_damaging(0.999) TCGA-85-8276-01 19 49261396 49261396 C A FGF21 Silent p.P183P 0.32 TCGA-85-8276-01 19 50492924 50492924 G A VRK3 Silent p.F356F 0.19 TCGA-85-8276-01 19 52869204 52869204 A G ZNF610 Silent p.Q191Q 0.26 TCGA-85-8276-01 19 53077404 53077404 G T ZNF701 Missense_Mutation p.A68S 0.13 deleterious(0.02) benign(0.379) TCGA-85-8276-01 19 53747128 53747128 A C ZNF677 Missense_Mutation p.V13G 0.08 deleterious(0) probably_damaging(0.998) TCGA-85-8276-01 19 54140046 54140046 C A DPRX Missense_Mutation p.P127H 0.20 deleterious(0) probably_damaging(0.909) TCGA-85-8276-01 19 55085952 55085952 A G LILRA2 Silent p.P85P 0.10 TCGA-85-8276-01 19 55341646 55341646 G A KIR3DL1 Silent p.R417R 0.43 TCGA-85-8276-01 19 55753800 55753800 C T PPP6R1 Silent p.Q225Q 0.19 TCGA-85-8276-01 19 55899336 55899336 A G RPL28 Missense_Mutation p.I82V 0.24 tolerated(0.08) possibly_damaging(0.53) TCGA-85-8276-01 19 56903177 56903177 A G ZNF582 5'UTR 0.17 TCGA-85-8276-01 19 58050159 58050159 A C ZNF549 Missense_Mutation p.Y596S 0.20 tolerated(0.65) benign(0.163) TCGA-85-8276-01 19 6495424 6495424 C G TUBB4A Missense_Mutation p.K362N 0.10 deleterious_low_confidence(0.04) possibly_damaging(0.552) TCGA-85-8276-01 19 7595243 7595243 C T MCOLN1 Silent p.F477F 0.11 TCGA-85-8276-01 19 8841994 8841994 T A OR2Z1 Missense_Mutation p.S202T 0.28 tolerated(0.17) probably_damaging(0.998) TCGA-85-8276-01 19 9046252 9046252 A T MUC16 Silent p.P11793P 0.09 TCGA-85-8276-01 19 9059338 9059339 - G MUC16 Frame_Shift_Ins p.K9370Qfs*48 0.22 TCGA-85-8276-01 19 9069397 9069397 C T MUC16 Missense_Mutation p.G6017R 0.13 unknown(0) TCGA-85-8276-01 1 103544239 103544239 T C COL11A1 Missense_Mutation p.R155G 0.07 probably_damaging(0.98) TCGA-85-8276-01 1 115537402 115537402 A G SYCP1 Silent p.P929P 0.12 TCGA-85-8276-01 1 151502527 151502527 G A CGN Missense_Mutation p.R750Q 0.11 tolerated(0.37) possibly_damaging(0.521) TCGA-85-8276-01 1 152777593 152777593 C A LCE1C 3'UTR 0.16 TCGA-85-8276-01 1 153744355 153744355 G A INTS3 Nonsense_Mutation p.W879* 0.14 TCGA-85-8276-01 1 156316671 156316671 A G TSACC Silent p.A92A 0.35 TCGA-85-8276-01 1 157557213 157557213 C T FCRL4 Missense_Mutation p.E234K 0.06 tolerated(1) benign(0.002) TCGA-85-8276-01 1 160322967 160322967 A G NCSTN Silent p.S373S 0.25 TCGA-85-8276-01 1 16103664 16103664 G T FBLIM1 3'Flank 0.04 TCGA-85-8276-01 1 161495416 161495416 T C HSPA6 Missense_Mutation p.L323P 0.12 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-85-8276-01 1 175375862 175375862 G A TNR 5'UTR 0.24 TCGA-85-8276-01 1 176679135 176679135 C T PAPPA2 Silent p.C1158C 0.09 TCGA-85-8276-01 1 17681153 17681153 G T PADI4 Missense_Mutation p.R427S 0.12 deleterious(0) probably_damaging(1) TCGA-85-8276-01 1 179320554 179320554 A G SOAT1 Missense_Mutation p.Y518C 0.10 deleterious(0) probably_damaging(1) TCGA-85-8276-01 1 183072586 183072586 C A LAMC1 Missense_Mutation p.S181Y 0.29 deleterious(0) probably_damaging(1) TCGA-85-8276-01 1 186059904 186059904 G A HMCN1 Missense_Mutation p.A3248T 0.24 benign(0.338) TCGA-85-8276-01 1 197073721 197073721 G C ASPM Missense_Mutation p.H1554D 0.12 deleterious(0) benign(0.142) TCGA-85-8276-01 1 197889112 197889112 C T LHX9 Missense_Mutation p.P62L 0.11 tolerated(0.69) benign(0.001) TCGA-85-8276-01 1 202121800 202121800 G A PTPN7 Missense_Mutation p.H354Y 0.35 deleterious(0) probably_damaging(0.997) TCGA-85-8276-01 1 203816447 203816447 C T ZC3H11A Missense_Mutation p.S393L 0.07 tolerated(0.26) benign(0.007) TCGA-85-8276-01 1 214706037 214706037 A C PTPN14 Intron 0.09 TCGA-85-8276-01 1 216246271 216246271 T C USH2A Silent p.S1939S 0.11 TCGA-85-8276-01 1 216896695 216896695 G C ESRRG 5'UTR 0.34 TCGA-85-8276-01 1 220355625 220355625 C A RAB3GAP2 Missense_Mutation p.A762S 0.08 tolerated(0.65) benign(0.059) TCGA-85-8276-01 1 222717482 222717482 G A HHIPL2 Missense_Mutation p.T124M 0.29 deleterious(0.04) benign(0.218) TCGA-85-8276-01 1 222923497 222923497 C A FAM177B 3'UTR 0.32 TCGA-85-8276-01 1 229623284 229623284 G C NUP133 Missense_Mutation p.A424G 0.09 tolerated(0.34) benign(0.038) TCGA-85-8276-01 1 238090591 238090591 C A RP11-193H5.1 RNA 0.22 TCGA-85-8276-01 1 240371039 240371039 C G FMN2 Missense_Mutation p.P976R 0.20 unknown(0) TCGA-85-8276-01 1 247202807 247202807 G T ZNF670 Silent p.A12A 0.12 TCGA-85-8276-01 1 248112334 248112334 T C OR2L8 Missense_Mutation p.Y59H 0.30 deleterious(0.01) possibly_damaging(0.765) TCGA-85-8276-01 1 248128634 248128634 A G OR2AK2 Translation_Start_Site p.M1? 0.26 tolerated_low_confidence(0.42) benign(0.067) TCGA-85-8276-01 1 28365361 28365361 C T EYA3 Missense_Mutation p.M71I 0.10 tolerated(0.95) benign(0.002) TCGA-85-8276-01 1 31845903 31845903 G A FABP3 5'UTR 0.14 TCGA-85-8276-01 1 32256774 32256774 G T SPOCD1 Missense_Mutation p.S1027R 0.23 tolerated(0.07) benign(0.051) TCGA-85-8276-01 1 32713189 32713189 G A FAM167B Missense_Mutation p.R56H 0.18 tolerated(0.25) benign(0) TCGA-85-8276-01 1 34076741 34076741 G T CSMD2 Missense_Mutation p.S2041R 0.16 tolerated(0.08) possibly_damaging(0.587) TCGA-85-8276-01 1 40944962 40944962 T C ZFP69 5'UTR 0.23 TCGA-85-8276-01 1 51032847 51032847 G A FAF1 Silent p.F390F 0.26 TCGA-85-8276-01 1 65117963 65117963 G T CACHD1 Missense_Mutation p.A453S 0.21 tolerated(0.75) benign(0.022) TCGA-85-8276-01 1 7890198 7890198 C T PER3 Missense_Mutation p.S1055F 0.09 deleterious(0.04) possibly_damaging(0.583) TCGA-85-8276-01 1 82433862 82433862 C T LPHN2 Silent p.L817L 0.10 TCGA-85-8276-01 1 86847987 86847987 G A ODF2L Nonsense_Mutation p.R188* 0.28 TCGA-85-8276-01 1 89479089 89479089 T C GBP3 Missense_Mutation p.N216S 0.16 tolerated(0.41) benign(0.003) TCGA-85-8276-01 1 909315 909315 G T PLEKHN1 Missense_Mutation p.G513C 0.08 deleterious(0.04) probably_damaging(0.998) TCGA-85-8276-01 20 31611286 31611286 A T BPIFB2 3'UTR 0.21 TCGA-85-8276-01 20 31626730 31626730 C T BPIFB6 Missense_Mutation p.P288S 0.23 deleterious(0.04) benign(0.125) TCGA-85-8276-01 20 52831902 52831902 A G PFDN4 Missense_Mutation p.M66V 0.16 tolerated(0.23) benign(0.232) TCGA-85-8276-01 20 57036138 57036138 C T APCDD1L Missense_Mutation p.R405Q 0.30 tolerated(0.06) probably_damaging(0.919) TCGA-85-8276-01 21 45514036 45514036 A G TRAPPC10 Silent p.G1030G 0.30 TCGA-85-8276-01 22 25753322 25753322 C T LRP5L Missense_Mutation p.R113H 0.23 tolerated(0.57) benign(0.032) TCGA-85-8276-01 22 26422503 26422503 G C MYO18B Missense_Mutation p.G2188A 0.26 tolerated(0.2) benign(0.033) TCGA-85-8276-01 22 40704534 40704534 T A TNRC6B Missense_Mutation p.M1380K 0.16 deleterious(0) benign(0.12) TCGA-85-8276-01 2 103311515 103311515 T A SLC9A2 Missense_Mutation p.V510E 0.16 deleterious(0) probably_damaging(0.914) TCGA-85-8276-01 2 113346498 113346498 G C CHCHD5 3'UTR 0.07 TCGA-85-8276-01 2 113819735 113819735 G A IL36RN Silent p.L50L 0.13 TCGA-85-8276-01 2 139318391 139318391 A G SPOPL Missense_Mutation p.N244S 0.18 tolerated(0.92) benign(0) TCGA-85-8276-01 2 155307080 155307080 G T GALNT13 3'UTR 0.21 TCGA-85-8276-01 2 160721404 160721404 C G LY75-CD302 Missense_Mutation p.L715F 0.29 deleterious(0.01) probably_damaging(0.986) TCGA-85-8276-01 2 178098060 178098060 T C NFE2L2 Missense_Mutation p.H107R 0.16 tolerated(0.53) benign(0.042) TCGA-85-8276-01 2 179404001 179404001 C T TTN Intron 0.18 TCGA-85-8276-01 2 179582815 179582815 T C TTN Silent p.S8306S 0.07 TCGA-85-8276-01 2 179640817 179640817 A C TTN Missense_Mutation p.V1925G 0.19 TCGA-85-8276-01 2 185800841 185800841 G T ZNF804A Missense_Mutation p.A240S 0.25 tolerated(0.26) probably_damaging(0.978) TCGA-85-8276-01 2 193056703 193056703 C G TMEFF2 Missense_Mutation p.R62T 0.08 deleterious(0) benign(0.261) TCGA-85-8276-01 2 201726495 201726495 T C CLK1 Missense_Mutation p.R73G 0.34 deleterious_low_confidence(0) benign(0.103) TCGA-85-8276-01 2 202141685 202141685 G A CASP8 Missense_Mutation p.D325N 0.15 deleterious(0) probably_damaging(1) TCGA-85-8276-01 2 202554927 202554927 C T MPP4 Missense_Mutation p.E93K 0.26 deleterious(0.01) possibly_damaging(0.639) TCGA-85-8276-01 2 204045113 204045113 G C NBEAL1 Missense_Mutation p.C2129S 0.05 deleterious(0) probably_damaging(0.988) TCGA-85-8276-01 2 217315767 217315767 A G SMARCAL1 Missense_Mutation p.M684V 0.43 tolerated(0.09) possibly_damaging(0.823) TCGA-85-8276-01 2 217363595 217363595 G T RPL37A 5'UTR 0.30 TCGA-85-8276-01 2 39213101 39213101 C A SOS1 Missense_Mutation p.G1289V 0.07 tolerated_low_confidence(0.15) probably_damaging(0.994) TCGA-85-8276-01 2 55910939 55910939 C A PNPT1 Missense_Mutation p.G145V 0.37 deleterious(0.01) probably_damaging(0.949) TCGA-85-8276-01 2 63272579 63272579 C G EHBP1 Missense_Mutation p.L1214V 0.07 deleterious(0.03) probably_damaging(0.997) TCGA-85-8276-01 2 63661009 63661009 T C WDPCP Missense_Mutation p.N232S 0.31 tolerated(0.18) benign(0.437) TCGA-85-8276-01 2 65488504 65488504 C G ACTR2 Missense_Mutation p.Q292E 0.05 deleterious(0.03) benign(0.193) TCGA-85-8276-01 2 66794629 66794629 A T MEIS1 Missense_Mutation p.Q337L 0.10 deleterious(0.01) benign(0.277) TCGA-85-8276-01 2 69554196 69554196 C A GFPT1 Silent p.V635V 0.05 TCGA-85-8276-01 2 71788914 71788914 C G DYSF Missense_Mutation p.S750C 0.08 tolerated(0.25) benign(0.004) TCGA-85-8276-01 2 71817345 71817345 G T DYSF Silent p.G1167G 0.07 TCGA-85-8276-01 2 74479386 74479386 C T SLC4A5 Silent p.G466G 0.09 TCGA-85-8276-01 2 75108879 75108879 T A HK2 Missense_Mutation p.F538I 0.07 deleterious(0.02) probably_damaging(1) TCGA-85-8276-01 2 80530979 80530979 C G LRRTM1 5'UTR 0.33 TCGA-85-8276-01 2 8919867 8919867 C T KIDINS220 Silent p.L769L 0.07 TCGA-85-8276-01 3 108363094 108363094 C G DZIP3 Missense_Mutation p.R409G 0.11 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-85-8276-01 3 112997098 112997098 C T BOC Nonsense_Mutation p.R566* 0.11 TCGA-85-8276-01 3 119133011 119133011 G T ARHGAP31 Silent p.L745L 0.10 TCGA-85-8276-01 3 119631619 119631619 T C GSK3B Missense_Mutation p.Y216C 0.09 deleterious(0) probably_damaging(1) TCGA-85-8276-01 3 121417688 121417688 T C GOLGB1 Missense_Mutation p.H561R 0.21 possibly_damaging(0.84) TCGA-85-8276-01 3 122545844 122545844 C A DIRC2 Nonsense_Mutation p.S212* 0.05 TCGA-85-8276-01 3 122629123 122629123 G A SEMA5B Missense_Mutation p.P1162L 0.19 tolerated_low_confidence(1) probably_damaging(0.962) TCGA-85-8276-01 3 145789079 145789079 T A PLOD2 Silent p.A660A 0.12 TCGA-85-8276-01 3 164756912 164756912 G A SI Missense_Mutation p.T752I 0.11 tolerated(0.19) benign(0.006) TCGA-85-8276-01 3 164780178 164780178 A G SI Missense_Mutation p.V334A 0.12 deleterious(0.01) probably_damaging(0.985) TCGA-85-8276-01 3 195505264 195505264 T - MUC4 Frame_Shift_Del p.T4285Qfs*142 0.09 TCGA-85-8276-01 3 196199526 196199526 T C RNF168 Missense_Mutation p.I294V 0.09 tolerated(0.63) benign(0) TCGA-85-8276-01 3 44761796 44761796 G C ZNF502 Missense_Mutation p.E15Q 0.04 tolerated(0.31) benign(0.047) TCGA-85-8276-01 3 46560523 46560523 G T LRRC2 Missense_Mutation p.S366Y 0.11 deleterious(0) probably_damaging(0.94) TCGA-85-8276-01 3 69928400 69928400 A T MITF Missense_Mutation p.R74W 0.30 deleterious(0) probably_damaging(0.975) TCGA-85-8276-01 3 75480010 75480010 C A RP11-803B1.8 5'Flank 0.30 TCGA-85-8276-01 3 98518445 98518445 G T DCBLD2 Missense_Mutation p.T700N 0.05 deleterious(0.03) benign(0.048) TCGA-85-8276-01 4 100851774 100851774 T C DNAJB14 Silent p.L46L 0.15 TCGA-85-8276-01 4 104081812 104081812 T C CENPE Silent p.L752L 0.13 TCGA-85-8276-01 4 114199010 114199010 G T ANK2 Silent p.L567L 0.19 TCGA-85-8276-01 4 126373196 126373196 A T FAT4 Silent p.T3675T 0.12 TCGA-85-8276-01 4 164394292 164394292 C A TKTL2 Missense_Mutation p.G199C 0.25 tolerated(0.39) benign(0.001) TCGA-85-8276-01 4 170608837 170608837 G T CLCN3 Missense_Mutation p.W116L 0.22 tolerated(0.37) probably_damaging(0.985) TCGA-85-8276-01 4 170913095 170913095 C G MFAP3L Missense_Mutation p.V222L 0.23 deleterious(0) probably_damaging(0.997) TCGA-85-8276-01 4 1843314 1843314 C A LETM1 Silent p.S118S 0.20 TCGA-85-8276-01 4 20543111 20543111 A T SLIT2 Missense_Mutation p.Y671F 0.15 deleterious(0) benign(0.041) TCGA-85-8276-01 4 20618574 20618574 C T SLIT2 Missense_Mutation p.P1297S 0.13 tolerated(0.75) benign(0.007) TCGA-85-8276-01 4 25417133 25417133 A G ANAPC4 Silent p.T624T 0.12 TCGA-85-8276-01 4 366668 366668 A G ZNF141 Missense_Mutation p.K148E 0.16 tolerated(0.09) benign(0.007) TCGA-85-8276-01 4 40121931 40121931 C G N4BP2 Missense_Mutation p.Q734E 0.07 tolerated(0.27) benign(0.006) TCGA-85-8276-01 4 52779763 52779763 A G DCUN1D4 3'UTR 0.09 TCGA-85-8276-01 4 52895010 52895010 C T SGCB Silent p.Q169Q 0.12 TCGA-85-8276-01 4 66197744 66197744 A C EPHA5 Missense_Mutation p.I985M 0.19 deleterious(0.01) benign(0.243) TCGA-85-8276-01 4 6925785 6925785 T C TBC1D14 Silent p.A223A 0.11 TCGA-85-8276-01 4 6925786 6925786 G T TBC1D14 Nonsense_Mutation p.E224* 0.11 TCGA-85-8276-01 5 102493975 102493975 G T PPIP5K2 Nonsense_Mutation p.E525* 0.19 TCGA-85-8276-01 5 10415675 10415675 G C MARCH6 Missense_Mutation p.G681A 0.29 deleterious(0) probably_damaging(0.999) TCGA-85-8276-01 5 11111100 11111100 T A CTNND2 Missense_Mutation p.E778V 0.12 deleterious(0.02) probably_damaging(0.938) TCGA-85-8276-01 5 128863489 128863489 C G ADAMTS19 Missense_Mutation p.R373G 0.13 deleterious(0.02) probably_damaging(0.944) TCGA-85-8276-01 5 131822498 131822498 C T IRF1 Missense_Mutation p.A135T 0.14 tolerated(0.34) benign(0.001) TCGA-85-8276-01 5 13717602 13717602 C T DNAH5 Missense_Mutation p.S4176N 0.05 benign(0.005) TCGA-85-8276-01 5 13769651 13769651 T C DNAH5 Missense_Mutation p.K3227E 0.13 possibly_damaging(0.621) TCGA-85-8276-01 5 140026904 140026904 G A NDUFA2 Missense_Mutation p.P49S 0.18 deleterious(0.01) benign(0.438) TCGA-85-8276-01 5 140203290 140203290 C T PCDHA5 Missense_Mutation p.H644Y 0.12 deleterious_low_confidence(0.04) benign(0.007) TCGA-85-8276-01 5 140203291 140203291 A T PCDHA5 Missense_Mutation p.H644L 0.14 deleterious_low_confidence(0.01) benign(0.016) TCGA-85-8276-01 5 140307898 140307898 T A PCDHAC1 Missense_Mutation p.L474Q 0.13 tolerated(0.35) benign(0.097) TCGA-85-8276-01 5 140580779 140580782 AGAG - PCDHB11 Frame_Shift_Del p.R478Tfs*63 0.09 TCGA-85-8276-01 5 140764820 140764820 G T PCDHGA7 Missense_Mutation p.C785F 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.862) TCGA-85-8276-01 5 145631282 145631282 A G RBM27 Missense_Mutation p.M430V 0.15 tolerated_low_confidence(0.3) benign(0) TCGA-85-8276-01 5 16463589 16463589 A - ZNF622 Splice_Site p.X296_splice 0.23 TCGA-85-8276-01 5 172661807 172661807 G C NKX2-5 Missense_Mutation p.P94A 0.11 tolerated(0.99) probably_damaging(0.956) TCGA-85-8276-01 5 26881561 26881561 T A CDH9 Missense_Mutation p.D685V 0.27 tolerated(0.16) possibly_damaging(0.61) TCGA-85-8276-01 5 26881562 26881562 C A CDH9 Missense_Mutation p.D685Y 0.27 deleterious(0.02) possibly_damaging(0.866) TCGA-85-8276-01 5 63256762 63256762 T C HTR1A Missense_Mutation p.N262S 0.12 tolerated(1) benign(0.002) TCGA-85-8276-01 5 6754866 6754866 G T PAPD7 Missense_Mutation p.Q479H 0.21 tolerated_low_confidence(0.5) benign(0.01) TCGA-85-8276-01 5 68467128 68467128 C T CCNB1 Missense_Mutation p.T132I 0.08 tolerated(0.45) benign(0.222) TCGA-85-8276-01 5 70308326 70308326 G T NAIP Missense_Mutation p.D139E 0.21 tolerated(0.45) benign(0.012) TCGA-85-8276-01 5 82833836 82833836 G C VCAN Missense_Mutation p.D1672H 0.16 deleterious(0.01) benign(0.423) TCGA-85-8276-01 5 95751822 95751822 G A PCSK1 Silent p.H208H 0.11 TCGA-85-8276-01 6 101307059 101307059 C A ASCC3 Intron 0.10 TCGA-85-8276-01 6 107954948 107954948 G C SOBP Missense_Mutation p.W300C 0.39 deleterious(0) probably_damaging(0.999) TCGA-85-8276-01 6 110777641 110777641 A T SLC22A16 Intron 0.28 TCGA-85-8276-01 6 112671578 112671578 T A RFPL4B Missense_Mutation p.V223D 0.22 deleterious(0) probably_damaging(0.991) TCGA-85-8276-01 6 117114324 117114324 T A GPRC6A Missense_Mutation p.N588Y 0.28 deleterious(0.01) benign(0.163) TCGA-85-8276-01 6 160858091 160858091 T G SLC22A3 Missense_Mutation p.L379R 0.40 deleterious(0.03) probably_damaging(1) TCGA-85-8276-01 6 165715782 165715782 T A C6orf118 Missense_Mutation p.Y10F 0.34 deleterious_low_confidence(0.05) benign(0.202) TCGA-85-8276-01 6 169637784 169637784 G T THBS2 Missense_Mutation p.S412R 0.22 tolerated(0.18) benign(0.073) TCGA-85-8276-01 6 24654713 24654713 C A TDP2 Missense_Mutation p.R188I 0.28 deleterious(0) possibly_damaging(0.707) TCGA-85-8276-01 6 36177588 36177588 G T BRPF3 Nonsense_Mutation p.E588* 0.17 TCGA-85-8276-01 6 36442829 36442829 A C KCTD20 Missense_Mutation p.M142L 0.19 tolerated(0.08) possibly_damaging(0.673) TCGA-85-8276-01 6 42227231 42227231 C A TRERF1 Silent p.L705L 0.10 TCGA-85-8276-01 6 43273779 43273779 C A CRIP3 Intron 0.24 TCGA-85-8276-01 6 43578442 43578442 C A POLH Missense_Mutation p.S409Y 0.06 deleterious(0) benign(0.127) TCGA-85-8276-01 6 43643265 43643265 C T MRPS18A Silent p.K114K 0.22 TCGA-85-8276-01 6 46826556 46826556 T G GPR116 Silent p.A1028A 0.17 TCGA-85-8276-01 6 51941083 51941083 C A PKHD1 Missense_Mutation p.G147C 0.16 deleterious(0) probably_damaging(1) TCGA-85-8276-01 6 52546658 52546658 G C TMEM14A Missense_Mutation p.G40R 0.22 deleterious(0.01) probably_damaging(0.909) TCGA-85-8276-01 6 55443890 55443890 G A HMGCLL1 5'UTR 0.17 TCGA-85-8276-01 6 62757888 62757888 C A KHDRBS2 Silent p.V77V 0.12 TCGA-85-8276-01 6 72892158 72892158 A G RIMS1 Silent p.P328P 0.25 TCGA-85-8276-01 6 90397877 90397877 C G MDN1 Missense_Mutation p.D3759H 0.06 possibly_damaging(0.838) TCGA-85-8276-01 7 105660955 105660955 C A CDHR3 Missense_Mutation p.S597Y 0.04 deleterious(0) probably_damaging(0.999) TCGA-85-8276-01 7 127238639 127238639 A C FSCN3 Missense_Mutation p.I371L 0.06 tolerated(0.37) benign(0.001) TCGA-85-8276-01 7 127847954 127847954 C - MIR129-1 RNA 0.21 TCGA-85-8276-01 7 128035240 128035240 G A IMPDH1 Silent p.G450G 0.20 TCGA-85-8276-01 7 142124414 142124414 C A TRBV6-8 Missense_Mutation p.G22C 0.23 deleterious(0) possibly_damaging(0.84) TCGA-85-8276-01 7 142723545 142723545 C G OR9A2 Silent p.P225P 0.19 TCGA-85-8276-01 7 149489222 149489222 C T SSPO RNA 0.23 TCGA-85-8276-01 7 150864220 150864220 G T GBX1 Missense_Mutation p.P139Q 0.29 tolerated(0.09) benign(0.218) TCGA-85-8276-01 7 154585857 154585857 C G DPP6 Missense_Mutation p.A402G 0.22 deleterious(0.05) benign(0.191) TCGA-85-8276-01 7 38389097 38389097 G C TRGV5 Silent p.S71S 0.32 TCGA-85-8276-01 7 47869163 47869163 T C PKD1L1 Missense_Mutation p.R2199G 0.28 deleterious(0.01) possibly_damaging(0.448) TCGA-85-8276-01 7 53104174 53104174 G A POM121L12 Silent p.A270A 0.10 TCGA-85-8276-01 7 63538527 63538527 C G ZNF727 Missense_Mutation p.P367R 0.29 deleterious(0.02) possibly_damaging(0.49) TCGA-85-8276-01 7 83037748 83037748 G C SEMA3E Missense_Mutation p.I202M 0.16 deleterious(0) possibly_damaging(0.472) TCGA-85-8276-01 7 88963384 88963384 C T ZNF804B Missense_Mutation p.A363V 0.24 deleterious(0.02) benign(0.022) TCGA-85-8276-01 7 94931534 94931534 T A PON1 Missense_Mutation p.N298Y 0.16 tolerated(0.06) benign(0.386) TCGA-85-8276-01 7 99459298 99459298 G A CYP3A43 Silent p.T363T 0.15 TCGA-85-8276-01 8 110455959 110455959 A T PKHD1L1 Missense_Mutation p.E1540V 0.49 tolerated(0.18) benign(0.297) TCGA-85-8276-01 8 145999904 145999904 C T ZNF34 Missense_Mutation p.A144T 0.06 tolerated(0.6) benign(0.001) TCGA-85-8276-01 8 146033504 146033504 C T ZNF517 Silent p.C401C 0.05 TCGA-85-8276-01 8 25161807 25161807 A G DOCK5 Missense_Mutation p.D338G 0.21 deleterious(0.01) possibly_damaging(0.757) TCGA-85-8276-01 8 25280877 25280877 G C GNRH1 5'UTR 0.16 TCGA-85-8276-01 8 41559112 41559113 AA - ANK1 Frame_Shift_Del p.F839Pfs*2 0.13 TCGA-85-8276-01 8 6782425 6782425 T A DEFA6 Missense_Mutation p.H73L 0.11 tolerated(0.32) benign(0.016) TCGA-85-8276-01 8 98943302 98943302 C G MATN2 Missense_Mutation p.D88E 0.05 tolerated(0.15) possibly_damaging(0.836) TCGA-85-8276-01 9 116093376 116093376 T A WDR31 Missense_Mutation p.E46V 0.41 deleterious(0.02) benign(0.309) TCGA-85-8276-01 9 116093377 116093377 C A WDR31 Nonsense_Mutation p.E46* 0.38 TCGA-85-8276-01 9 120476453 120476453 C A TLR4 Missense_Mutation p.Q683K 0.36 tolerated(0.8) possibly_damaging(0.889) TCGA-85-8276-01 9 136634594 136634594 G C VAV2 Silent p.L793L 0.19 TCGA-85-8276-01 9 35704049 35704049 C T TLN1 Missense_Mutation p.R2057H 0.07 tolerated(0.18) benign(0.008) TCGA-85-8276-01 9 35705577 35705577 G A TLN1 Missense_Mutation p.P1902S 0.11 tolerated(0.87) benign(0.038) TCGA-85-8276-01 9 38413247 38413247 G A IGFBPL1 Missense_Mutation p.T225M 0.39 deleterious(0) probably_damaging(0.995) TCGA-85-8276-01 9 82322036 82322036 A G TLE4 Intron 0.38 TCGA-85-8276-01 X 107037910 107037910 T C NCBP2L Nonstop_Mutation p.*154Qext*? 0.33 TCGA-85-8276-01 X 110970982 110970982 C A ALG13 Missense_Mutation p.A744D 0.13 deleterious(0) probably_damaging(0.996) TCGA-85-8276-01 X 138619191 138619191 C A F9 Silent p.A37A 0.31 TCGA-85-8276-01 X 140985106 140985106 A T MAGEC3 Missense_Mutation p.H521L 0.21 deleterious(0) benign(0.046) TCGA-85-8276-01 X 142795544 142795544 T C SPANXN2 Missense_Mutation p.K45R 0.31 tolerated_low_confidence(0.08) probably_damaging(0.946) TCGA-85-8276-01 X 151336660 151336660 G T GABRA3 3'UTR 0.35 TCGA-85-8276-01 X 19017334 19017334 A T GPR64 Missense_Mutation p.F798L 0.28 deleterious(0.03) benign(0.162) TCGA-85-8276-01 X 37651307 37651307 A T CYBB Missense_Mutation p.H111L 0.33 tolerated(0.41) benign(0.115) TCGA-85-8276-01 X 44918526 44918526 G T KDM6A Missense_Mutation p.A337S 0.24 deleterious(0.04) probably_damaging(1) TCGA-85-8277-01 10 106974250 106974250 A G SORCS3 Missense_Mutation p.Y809C 0.23 deleterious(0.02) probably_damaging(0.984) TCGA-85-8277-01 10 108337086 108337086 C A SORCS1 Intron 0.28 TCGA-85-8277-01 10 108459020 108459020 G C SORCS1 Silent p.V455V 0.32 TCGA-85-8277-01 10 1149549 1149549 G T WDR37 Missense_Mutation p.G245V 0.27 tolerated(0.25) probably_damaging(0.994) TCGA-85-8277-01 10 134540404 134540404 G T INPP5A Missense_Mutation p.V243L 0.52 tolerated(0.05) benign(0.005) TCGA-85-8277-01 10 37430753 37430753 G T ANKRD30A Missense_Mutation p.V254L 0.16 tolerated(0.37) benign(0.01) TCGA-85-8277-01 10 37438708 37438708 G A ANKRD30A Missense_Mutation p.A470T 0.23 tolerated(0.47) benign(0.044) TCGA-85-8277-01 10 49791048 49791048 G T ARHGAP22 Missense_Mutation p.R62S 0.52 deleterious(0) benign(0.331) TCGA-85-8277-01 10 50531978 50531978 A T C10orf71 Missense_Mutation p.Q463L 0.15 deleterious(0.03) benign(0.035) TCGA-85-8277-01 10 50724690 50724690 G T ERCC6-PGBD3 Silent p.L625L 0.20 TCGA-85-8277-01 10 70097079 70097079 A G HNRNPH3 Missense_Mutation p.Q34R 0.14 deleterious(0.02) unknown(0) TCGA-85-8277-01 10 71690306 71690306 C T COL13A1 Missense_Mutation p.P550S 0.29 deleterious(0.02) possibly_damaging(0.871) TCGA-85-8277-01 10 71690309 71690309 G T COL13A1 Splice_Site p.X550_splice 0.28 TCGA-85-8277-01 10 73521716 73521716 G A C10orf54 Silent p.V50V 0.16 TCGA-85-8277-01 10 74658658 74658658 G A OIT3 Missense_Mutation p.V100M 0.30 deleterious(0) probably_damaging(0.937) TCGA-85-8277-01 10 92654616 92654616 G T RPP30 Missense_Mutation p.A173S 0.22 deleterious(0.04) possibly_damaging(0.854) TCGA-85-8277-01 11 100141954 100141954 G A CNTN5 Missense_Mutation p.M765I 0.19 tolerated(0.11) benign(0.003) TCGA-85-8277-01 11 105009638 105009638 C T CARD18 Missense_Mutation p.D59N 0.29 deleterious(0.03) probably_damaging(0.967) TCGA-85-8277-01 11 105623738 105623738 C A GRIA4 Silent p.A93A 0.45 TCGA-85-8277-01 11 107923444 107923444 G C CUL5 Missense_Mutation p.D157H 0.21 deleterious(0.01) possibly_damaging(0.5) TCGA-85-8277-01 11 117389387 117389387 G A DSCAML1 Missense_Mutation p.P495L 0.23 deleterious(0) probably_damaging(1) TCGA-85-8277-01 11 118984580 118984580 C T C2CD2L Missense_Mutation p.S503F 0.28 deleterious(0.04) probably_damaging(0.952) TCGA-85-8277-01 11 122817427 122817427 G C C11orf63 Missense_Mutation p.S619T 0.68 tolerated(0.09) benign(0.055) TCGA-85-8277-01 11 17172067 17172067 T A PIK3C2A Silent p.L435L 0.24 TCGA-85-8277-01 11 35308318 35308318 C G SLC1A2 Missense_Mutation p.Q424H 0.22 deleterious(0.02) probably_damaging(0.996) TCGA-85-8277-01 11 4389273 4389273 C G OR52B4 Missense_Mutation p.A85P 0.16 deleterious(0.01) possibly_damaging(0.824) TCGA-85-8277-01 11 44080234 44080234 C A ACCSL Missense_Mutation p.P537T 0.16 tolerated(0.4) benign(0.173) TCGA-85-8277-01 11 49598011 49598011 A T RP11-707M1.1 RNA 0.21 TCGA-85-8277-01 11 55405940 55405940 T G OR4P4 Missense_Mutation p.I36S 0.84 deleterious(0.02) benign(0.04) TCGA-85-8277-01 11 56237936 56237936 A G OR5M3 Missense_Mutation p.L13S 0.56 deleterious(0.03) benign(0.213) TCGA-85-8277-01 11 56344908 56344908 C T OR5M10 Missense_Mutation p.C97Y 0.43 deleterious(0) probably_damaging(0.999) TCGA-85-8277-01 11 5758335 5758335 G T OR56B1 Missense_Mutation p.A197S 0.20 tolerated(0.93) benign(0.252) TCGA-85-8277-01 11 57947615 57947615 G A OR9Q1 Silent p.Q233Q 0.58 TCGA-85-8277-01 11 6422246 6422246 C G APBB1 Missense_Mutation p.G547R 0.24 deleterious(0) probably_damaging(1) TCGA-85-8277-01 11 64594544 64594544 G A CDC42BPG Missense_Mutation p.P1456L 0.54 tolerated(0.1) benign(0.014) TCGA-85-8277-01 11 66050547 66050547 G A CNIH2 Silent p.L80L 0.06 TCGA-85-8277-01 11 66475136 66475136 T A SPTBN2 Missense_Mutation p.I502F 0.56 deleterious(0) possibly_damaging(0.607) TCGA-85-8277-01 11 836819 836829 CCTCGCCTACG - CD151 Frame_Shift_Del p.A111Lfs*26 0.19 TCGA-85-8277-01 11 88241716 88241716 G A GRM5 3'UTR 0.50 TCGA-85-8277-01 12 101750342 101750342 A T UTP20 Missense_Mutation p.E1802V 0.85 deleterious(0) benign(0.097) TCGA-85-8277-01 12 104067754 104067754 G A STAB2 Missense_Mutation p.C814Y 0.61 deleterious(0) probably_damaging(0.998) TCGA-85-8277-01 12 129442159 129442159 G T GLT1D1 Missense_Mutation p.V204F 0.25 tolerated(0.13) possibly_damaging(0.607) TCGA-85-8277-01 12 20833124 20833124 G A PDE3A Silent p.Q1115Q 0.18 TCGA-85-8277-01 12 2694590 2694590 G T CACNA1C Silent p.V796V 0.38 TCGA-85-8277-01 12 67698962 67698966 TCTGT - CAND1 Frame_Shift_Del p.L505Qfs*32 0.63 TCGA-85-8277-01 12 7050690 7050690 C T ATN1 Missense_Mutation p.P1171L 0.11 probably_damaging(0.975) TCGA-85-8277-01 12 77438474 77438474 C A E2F7 Missense_Mutation p.A311S 0.53 deleterious(0) probably_damaging(1) TCGA-85-8277-01 12 81568592 81568592 C T ACSS3 Missense_Mutation p.A375V 0.64 deleterious(0) possibly_damaging(0.886) TCGA-85-8277-01 12 88570051 88570051 G A TMTC3 Missense_Mutation p.E463K 0.15 tolerated(0.51) benign(0.02) TCGA-85-8277-01 12 94692554 94692554 T C PLXNC1 Silent p.H1407H 0.28 TCGA-85-8277-01 13 113153399 113153399 C A TUBGCP3 Missense_Mutation p.R803L 0.10 tolerated(0.07) probably_damaging(0.935) TCGA-85-8277-01 13 51287322 51287322 G A DLEU7 3'UTR 0.33 TCGA-85-8277-01 13 78472371 78472371 G A EDNRB Silent p.D521D 0.17 TCGA-85-8277-01 14 22102719 22102719 T C OR10G2 Missense_Mutation p.I94V 0.47 tolerated(0.16) benign(0.001) TCGA-85-8277-01 14 24771476 24771476 G A NOP9 Missense_Mutation p.R330K 0.31 deleterious(0.02) probably_damaging(0.966) TCGA-85-8277-01 14 31642764 31642764 T C HECTD1 Silent p.S284S 0.26 TCGA-85-8277-01 14 45432563 45432563 C T FAM179B Silent p.S313S 0.50 TCGA-85-8277-01 14 50089217 50089220 CTAA - MGAT2 Frame_Shift_Del p.T412Sfs*8 0.58 TCGA-85-8277-01 14 57858115 57858115 G A NAA30 Missense_Mutation p.R147K 0.56 tolerated(0.1) benign(0.253) TCGA-85-8277-01 14 64688332 64688332 A T SYNE2 Missense_Mutation p.L6700F 0.57 probably_damaging(1) TCGA-85-8277-01 14 64954194 64954194 T A ZBTB25 Missense_Mutation p.N252I 0.63 tolerated(0.09) benign(0.018) TCGA-85-8277-01 14 71205056 71205056 C T MAP3K9 Missense_Mutation p.G584R 0.61 tolerated(0.35) possibly_damaging(0.854) TCGA-85-8277-01 14 92264744 92264744 C G TC2N Splice_Site p.X213_splice 0.30 TCGA-85-8277-01 14 94512108 94512108 C T OTUB2 Missense_Mutation p.A182V 0.23 deleterious(0) probably_damaging(0.999) TCGA-85-8277-01 14 96756820 96756820 C T ATG2B Missense_Mutation p.A1937T 0.24 deleterious(0) probably_damaging(0.931) TCGA-85-8277-01 15 22369113 22369113 G T OR4M2 Missense_Mutation p.D180Y 0.27 deleterious(0) probably_damaging(1) TCGA-85-8277-01 15 25959373 25959373 C T ATP10A Missense_Mutation p.E598K 0.72 tolerated(0.65) benign(0.296) TCGA-85-8277-01 15 28260077 28260077 T A OCA2 Splice_Site p.X297_splice 0.10 TCGA-85-8277-01 15 34610773 34610773 G A SLC12A6 Intron 0.03 TCGA-85-8277-01 15 40657409 40657409 C T DISP2 Missense_Mutation p.R261W 0.21 deleterious(0.01) benign(0.249) TCGA-85-8277-01 15 41827050 41827050 G T RPAP1 Missense_Mutation p.L209M 0.68 deleterious(0) possibly_damaging(0.779) TCGA-85-8277-01 15 51750773 51750773 C G DMXL2 Missense_Mutation p.D2689H 0.69 deleterious(0) probably_damaging(1) TCGA-85-8277-01 15 73007687 73007687 A G BBS4 Silent p.T92T 0.63 TCGA-85-8277-01 15 77407100 77407100 A C PEAK1 Missense_Mutation p.Y1547D 0.04 tolerated(0.21) benign(0.001) TCGA-85-8277-01 15 84488620 84488620 G T ADAMTSL3 Missense_Mutation p.V141F 0.29 deleterious(0) probably_damaging(0.998) TCGA-85-8277-01 15 90039783 90039783 G T RHCG 5'UTR 0.60 TCGA-85-8277-01 16 20492225 20492225 A G ACSM2A Silent p.P497P 0.55 TCGA-85-8277-01 16 24372823 24372823 C T CACNG3 Missense_Mutation p.A196V 0.48 deleterious(0) probably_damaging(0.956) TCGA-85-8277-01 16 30021297 30021297 C T DOC2A Missense_Mutation p.D83N 0.22 deleterious(0) benign(0.208) TCGA-85-8277-01 16 3828705 3828705 C A CREBBP Missense_Mutation p.S646I 0.62 probably_damaging(0.993) TCGA-85-8277-01 16 48164795 48164795 C A ABCC12 Silent p.V380V 0.16 TCGA-85-8277-01 16 71483601 71483601 T C ZNF23 Silent p.T109T 0.38 TCGA-85-8277-01 16 74773919 74773919 A G FA2H Splice_Site p.X121_splice 0.40 TCGA-85-8277-01 16 75138811 75138811 T G ZNRF1 Intron 0.31 TCGA-85-8277-01 16 77227450 77227450 G T MON1B Missense_Mutation p.S84I 0.19 tolerated(0.15) benign(0.002) TCGA-85-8277-01 16 7759104 7759104 C A RBFOX1 Missense_Mutation p.P369T 0.41 deleterious(0) possibly_damaging(0.76) TCGA-85-8277-01 16 78064741 78064741 C G CLEC3A 3'UTR 0.15 TCGA-85-8277-01 16 89704558 89704558 C T DPEP1 Silent p.S388S 0.24 TCGA-85-8277-01 17 18638684 18638684 C G TRIM16L Missense_Mutation p.L320V 0.14 tolerated(0.11) probably_damaging(0.99) TCGA-85-8277-01 17 26851834 26851834 G A FOXN1 Missense_Mutation p.G146E 0.16 tolerated_low_confidence(0.17) possibly_damaging(0.574) TCGA-85-8277-01 17 39274224 39274224 C A KRTAP4-11 Missense_Mutation p.C115F 0.57 deleterious(0) unknown(0) TCGA-85-8277-01 17 42992749 42992749 G A GFAP Missense_Mutation p.R36C 0.20 deleterious(0) probably_damaging(0.949) TCGA-85-8277-01 17 43923702 43923702 C A SPPL2C Missense_Mutation p.T477N 0.62 deleterious(0) probably_damaging(0.986) TCGA-85-8277-01 17 46628424 46628424 G A HOXB3 Missense_Mutation p.R190W 0.21 deleterious(0) probably_damaging(0.999) TCGA-85-8277-01 17 58511476 58511476 C G C17orf64 3'Flank 0.77 TCGA-85-8277-01 17 6913440 6913440 G A ALOX12 Missense_Mutation p.D603N 0.10 tolerated(0.92) benign(0.139) TCGA-85-8277-01 17 7012080 7012080 G A ASGR2 Silent p.H84H 0.05 TCGA-85-8277-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.71 tolerated(0.11) benign(0.308) TCGA-85-8277-01 17 76497503 76497503 C A DNAH17-AS1 3'UTR 0.67 TCGA-85-8277-01 17 78328413 78328413 C G RNF213 Intron 0.20 TCGA-85-8277-01 17 79073758 79073768 GAGCTGGAGAA - BAIAP2 Frame_Shift_Del p.E174Lfs*138 0.50 TCGA-85-8277-01 18 13056182 13056182 G T CEP192 Missense_Mutation p.R1198I 0.21 deleterious(0.01) possibly_damaging(0.72) TCGA-85-8277-01 18 29672842 29672842 C T RNF138 Nonsense_Mutation p.Q35* 0.16 TCGA-85-8277-01 18 34322819 34322819 T A FHOD3 Missense_Mutation p.N1118K 0.21 tolerated(0.06) benign(0.078) TCGA-85-8277-01 18 61570578 61570578 G A SERPINB2 3'UTR 0.23 TCGA-85-8277-01 18 8343518 8343518 G T PTPRM Missense_Mutation p.R1018S 0.40 deleterious(0.01) probably_damaging(0.989) TCGA-85-8277-01 18 9399482 9399482 A G TWSG1 Missense_Mutation p.D210G 0.16 tolerated(0.37) benign(0.103) TCGA-85-8277-01 19 12127198 12127198 T A ZNF433 Missense_Mutation p.R162W 0.17 deleterious(0) benign(0.002) TCGA-85-8277-01 19 12155338 12155338 C T ZNF878 Missense_Mutation p.R293K 0.36 tolerated(0.34) benign(0.005) TCGA-85-8277-01 19 12186669 12186669 G A ZNF844 Missense_Mutation p.R245K 0.10 tolerated(0.06) possibly_damaging(0.723) TCGA-85-8277-01 19 14883273 14883273 C T EMR2 Missense_Mutation p.C79Y 0.33 deleterious(0) probably_damaging(0.978) TCGA-85-8277-01 19 18276991 18276991 G A PIK3R2 Missense_Mutation p.A480T 0.20 deleterious(0) possibly_damaging(0.897) TCGA-85-8277-01 19 2040174 2040174 G A MKNK2 Silent p.C371C 0.58 TCGA-85-8277-01 19 21300989 21300989 G T ZNF714 Missense_Mutation p.A507S 0.41 tolerated(0.05) benign(0.001) TCGA-85-8277-01 19 21493369 21493369 C G ZNF708 Missense_Mutation p.D22H 0.17 deleterious(0) probably_damaging(0.993) TCGA-85-8277-01 19 22785450 22785450 C A AC011467.1 5'Flank 0.48 TCGA-85-8277-01 19 37368272 37368272 G A ZNF345 Silent p.G180G 0.15 TCGA-85-8277-01 19 37368949 37368949 C T ZNF345 Missense_Mutation p.S406F 0.25 deleterious(0.03) benign(0.042) TCGA-85-8277-01 19 37676767 37676767 C T ZNF585B Missense_Mutation p.A558T 0.12 tolerated(0.32) probably_damaging(1) TCGA-85-8277-01 19 39960912 39960912 G T SUPT5H Nonsense_Mutation p.E510* 0.50 TCGA-85-8277-01 19 46973043 46973043 G T PNMAL1 Missense_Mutation p.T417N 0.05 tolerated(0.06) possibly_damaging(0.607) TCGA-85-8277-01 19 51217442 51217442 C T SHANK1 Missense_Mutation p.G213R 0.55 probably_damaging(0.985) TCGA-85-8277-01 19 56320814 56320814 G T NLRP11 Missense_Mutation p.Q388K 0.59 tolerated(0.24) possibly_damaging(0.549) TCGA-85-8277-01 19 9524694 9524694 T C ZNF266 Missense_Mutation p.I303V 0.33 deleterious(0.03) benign(0.003) TCGA-85-8277-01 1 110050184 110050184 G T AMIGO1 Missense_Mutation p.Q451K 0.46 tolerated(0.37) benign(0.031) TCGA-85-8277-01 1 115168451 115168451 C A DENND2C Missense_Mutation p.C52F 0.34 tolerated(0.41) benign(0.001) TCGA-85-8277-01 1 144886153 144886153 C T PDE4DIP Silent p.L1027L 0.20 TCGA-85-8277-01 1 144886174 144886174 C T PDE4DIP Silent p.K1020K 0.20 TCGA-85-8277-01 1 144886291 144886291 C T PDE4DIP Silent p.V981V 0.20 TCGA-85-8277-01 1 144886311 144886311 C G PDE4DIP Missense_Mutation p.E975Q 0.20 tolerated(0.21) probably_damaging(0.92) TCGA-85-8277-01 1 144892465 144892465 C T PDE4DIP Intron 0.24 TCGA-85-8277-01 1 148252838 148291006 1:148252838-148291006 - NBPF20 large deletion p.X2536_splice 0.13 TCGA-85-8277-01 1 157068984 157068984 C A ETV3L Missense_Mutation p.R82L 0.62 tolerated(0.08) benign(0.019) TCGA-85-8277-01 1 161488662 161488662 C T FCGR2A 3'UTR 0.40 TCGA-85-8277-01 1 16372060 16372060 G A CLCNKB Silent p.L36L 0.67 TCGA-85-8277-01 1 200613517 200613517 T A DDX59 Missense_Mutation p.L575F 0.73 deleterious(0) probably_damaging(0.979) TCGA-85-8277-01 1 21307699 21307699 G A EIF4G3 Nonsense_Mutation p.Q25* 0.35 TCGA-85-8277-01 1 216465706 216465706 G A USH2A Missense_Mutation p.R551C 0.13 probably_damaging(0.996) TCGA-85-8277-01 1 232581392 232581392 C G SIPA1L2 Missense_Mutation p.R1079T 0.17 deleterious(0.03) possibly_damaging(0.735) TCGA-85-8277-01 1 237527662 237527662 T A RYR2 Missense_Mutation p.F100Y 0.28 benign(0.094) TCGA-85-8277-01 1 237947402 237947402 G A RYR2 Silent p.Q4130Q 0.70 TCGA-85-8277-01 1 43896251 43896251 G A SZT2 Missense_Mutation p.G1465E 0.23 tolerated(1) benign(0.006) TCGA-85-8277-01 1 77094528 77094528 G A ST6GALNAC3 3'UTR 0.51 TCGA-85-8277-01 20 21186152 21186152 G C RP4-777D9.2 Intron 0.21 TCGA-85-8277-01 20 25273151 25273151 G A PYGB Missense_Mutation p.M693I 0.04 deleterious(0) benign(0.038) TCGA-85-8277-01 20 2779427 2779427 G A CPXM1 Silent p.P95P 0.37 TCGA-85-8277-01 20 32232507 32232507 G C CBFA2T2 3'UTR 0.13 TCGA-85-8277-01 20 35521326 35521326 T A SAMHD1 3'UTR 0.30 TCGA-85-8277-01 20 36841739 36841739 A G KIAA1755 Missense_Mutation p.L1103S 0.13 tolerated(0.66) benign(0.002) TCGA-85-8277-01 20 42168860 42168860 T C L3MBTL1 Missense_Mutation p.L726P 0.29 deleterious(0) probably_damaging(0.926) TCGA-85-8277-01 20 58444898 58444898 A T SYCP2 Silent p.I1232I 0.33 TCGA-85-8277-01 20 61288092 61288092 C T SLCO4A1 Silent p.L96L 0.60 TCGA-85-8277-01 20 61990960 61990960 G - CHRNA4 Frame_Shift_Del p.N57Tfs*26 0.25 TCGA-85-8277-01 20 9560963 9560963 C A PAK7 Silent p.L273L 0.31 TCGA-85-8277-01 21 31311815 31311815 C A GRIK1 Nonsense_Mutation p.E2* 0.78 TCGA-85-8277-01 21 41385158 41385158 T C DSCAM Missense_Mutation p.M1948V 0.23 tolerated_low_confidence(0.4) benign(0.004) TCGA-85-8277-01 22 18301411 18301411 C A MICAL3 Missense_Mutation p.G1339V 0.41 probably_damaging(0.999) TCGA-85-8277-01 22 19839445 19839445 G A C22orf29 Silent p.L114L 0.14 TCGA-85-8277-01 22 20127118 20127118 C T ZDHHC8 Missense_Mutation p.P115L 0.15 deleterious(0) probably_damaging(1) TCGA-85-8277-01 22 20800939 20800939 G C KLHL22 Missense_Mutation p.L444V 0.20 tolerated(0.29) benign(0.063) TCGA-85-8277-01 22 22599388 22599388 C T VPREB1 Missense_Mutation p.P26L 0.44 tolerated(0.07) benign(0.378) TCGA-85-8277-01 22 32547507 32547507 G A C22orf42 Silent p.H144H 0.38 TCGA-85-8277-01 22 42565869 42565869 C G TCF20 Missense_Mutation p.R1928T 0.23 probably_damaging(0.997) TCGA-85-8277-01 22 50719372 50719372 T C PLXNB2 Missense_Mutation p.N1265S 0.15 tolerated(1) benign(0.026) TCGA-85-8277-01 2 136107567 136107567 C A ZRANB3 Missense_Mutation p.G193V 0.40 deleterious(0) probably_damaging(0.998) TCGA-85-8277-01 2 141474320 141474320 T G LRP1B Missense_Mutation p.T1942P 0.26 possibly_damaging(0.507) TCGA-85-8277-01 2 145156268 145156268 C - ZEB2 Frame_Shift_Del p.S829Ifs*3 0.15 TCGA-85-8277-01 2 163029656 163029656 C T FAP Intron 0.33 TCGA-85-8277-01 2 168108164 168108164 G T XIRP2 Missense_Mutation p.G3421V 0.43 probably_damaging(0.968) TCGA-85-8277-01 2 178482203 178482203 G A TTC30A Silent p.I409I 0.19 TCGA-85-8277-01 2 179397167 179397167 G T TTN Missense_Mutation p.D34725E 0.47 TCGA-85-8277-01 2 179411776 179411776 G T TTN Missense_Mutation p.S31492R 0.40 TCGA-85-8277-01 2 179411980 179411980 G T TTN Silent p.A31424A 0.16 TCGA-85-8277-01 2 179425436 179425436 G T TTN Missense_Mutation p.P28475T 0.39 TCGA-85-8277-01 2 179434422 179434422 G T TTN Missense_Mutation p.F25479L 0.46 TCGA-85-8277-01 2 179544669 179544669 C A TTN Nonsense_Mutation p.E11178* 0.13 TCGA-85-8277-01 2 179545809 179545809 T C TTN Missense_Mutation p.K11113E 0.26 TCGA-85-8277-01 2 179606147 179606147 G T TTN Missense_Mutation p.P3938H 0.21 TCGA-85-8277-01 2 179701611 179701611 G T CCDC141 Intron 0.33 TCGA-85-8277-01 2 180810022 180810022 G A CWC22 Missense_Mutation p.S854L 0.27 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-85-8277-01 2 211053611 211053611 C T ACADL 3'UTR 0.31 TCGA-85-8277-01 2 214727270 214727270 G T SPAG16 Missense_Mutation p.V378L 0.41 tolerated(0.4) benign(0.003) TCGA-85-8277-01 2 231775225 231775225 G A GPR55 Silent p.T151T 0.16 TCGA-85-8277-01 2 38298445 38298445 T A CYP1B1 Missense_Mutation p.D351V 0.19 deleterious(0.01) possibly_damaging(0.528) TCGA-85-8277-01 2 69379298 69379298 C A ANTXR1 Intron 0.36 TCGA-85-8277-01 2 69379299 69379299 A T ANTXR1 Splice_Site p.X318_splice 0.32 TCGA-85-8277-01 2 71753475 71753475 G A DYSF Silent p.Q425Q 0.18 TCGA-85-8277-01 2 97875534 97875534 C G ANKRD36 Intron 0.27 TCGA-85-8277-01 3 148789172 148789172 C G HLTF Missense_Mutation p.R254P 0.28 deleterious(0) probably_damaging(0.995) TCGA-85-8277-01 3 150128706 150128706 C G TSC22D2 Silent p.T523T 0.05 TCGA-85-8277-01 3 157820608 157820608 G A SHOX2 Silent p.I162I 0.27 TCGA-85-8277-01 3 159482655 159482655 A T IQCJ-SCHIP1 Missense_Mutation p.N239Y 0.24 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-85-8277-01 3 161217035 161217035 C A OTOL1 Nonsense_Mutation p.Y147* 0.14 TCGA-85-8277-01 3 167023438 167023438 G T ZBBX Nonsense_Mutation p.S573* 0.49 TCGA-85-8277-01 3 182925491 182925491 A G MCF2L2 Missense_Mutation p.Y873H 0.11 deleterious(0) probably_damaging(0.921) TCGA-85-8277-01 3 184062525 184062525 G A FAM131A Missense_Mutation p.E290K 0.03 tolerated(0.19) probably_damaging(0.953) TCGA-85-8277-01 3 190345153 190345153 C T IL1RAP Silent p.L273L 0.11 TCGA-85-8277-01 3 47033047 47033047 G A NBEAL2 Missense_Mutation p.R265H 0.48 deleterious(0.02) benign(0.302) TCGA-85-8277-01 3 47464015 47464015 C T SCAP Missense_Mutation p.E388K 0.31 deleterious(0) possibly_damaging(0.87) TCGA-85-8277-01 3 47614289 47614289 G A CSPG5 Silent p.C423C 0.33 TCGA-85-8277-01 3 49160658 49160658 C G LAMB2 Missense_Mutation p.E1377D 0.27 tolerated(1) benign(0.001) TCGA-85-8277-01 3 52821017 52821017 C T ITIH1 Missense_Mutation p.S597L 0.60 deleterious(0) probably_damaging(0.986) TCGA-85-8277-01 3 69053543 69053543 G A EOGT Silent p.S202S 0.58 TCGA-85-8277-01 3 89391110 89391110 C A EPHA3 Silent p.T392T 0.47 TCGA-85-8277-01 3 97868416 97868416 C G OR5H14 Missense_Mutation p.L63V 0.33 deleterious(0) possibly_damaging(0.899) TCGA-85-8277-01 4 107252834 107252834 A C AIMP1 Missense_Mutation p.K157Q 0.47 deleterious(0.04) probably_damaging(0.98) TCGA-85-8277-01 4 110920902 110920902 G C EGF Missense_Mutation p.A1025P 0.57 deleterious(0) probably_damaging(0.951) TCGA-85-8277-01 4 146695718 146695718 A C ZNF827 Missense_Mutation p.C934G 0.29 deleterious(0) probably_damaging(0.998) TCGA-85-8277-01 4 154217100 154217100 G C TRIM2 Missense_Mutation p.K474N 0.26 deleterious(0) possibly_damaging(0.71) TCGA-85-8277-01 4 155253719 155253719 G C DCHS2 Missense_Mutation p.T715R 0.57 tolerated(0.14) possibly_damaging(0.866) TCGA-85-8277-01 4 162307437 162307437 C A FSTL5 Missense_Mutation p.S669I 0.49 tolerated(0.3) benign(0) TCGA-85-8277-01 4 184431607 184431607 A G ING2 Silent p.A115A 0.56 TCGA-85-8277-01 4 2275822 2275822 C A ZFYVE28 Missense_Mutation p.D725Y 0.44 deleterious(0) probably_damaging(1) TCGA-85-8277-01 4 77676120 77676120 G A SHROOM3 Missense_Mutation p.R1495Q 0.50 tolerated(1) benign(0) TCGA-85-8277-01 5 11199600 11199600 G T CTNND2 Silent p.L645L 0.17 TCGA-85-8277-01 5 127727808 127727808 A T FBN2 Silent p.A502A 0.60 TCGA-85-8277-01 5 134190878 134190878 C T C5orf24 Silent p.T96T 0.57 TCGA-85-8277-01 5 135188297 135188297 G T SLC25A48 Missense_Mutation p.A70S 0.51 deleterious(0.04) possibly_damaging(0.72) TCGA-85-8277-01 5 140257136 140257136 G T PCDHA12 Silent p.L693L 0.55 TCGA-85-8277-01 5 145665639 145665639 A G RBM27 3'UTR 0.57 TCGA-85-8277-01 5 24491897 24491897 T C CDH10 Missense_Mutation p.N555S 0.46 tolerated(1) benign(0.001) TCGA-85-8277-01 5 35776395 35776395 C A SPEF2 Missense_Mutation p.T1372K 0.23 tolerated(0.16) benign(0.079) TCGA-85-8277-01 5 35779355 35779355 C A SPEF2 Missense_Mutation p.R1452S 0.21 deleterious(0.01) probably_damaging(0.995) TCGA-85-8277-01 5 3600241 3600241 C G IRX1 Silent p.G393G 0.18 TCGA-85-8277-01 5 3600253 3600253 C A IRX1 Silent p.P397P 0.20 TCGA-85-8277-01 5 37605188 37605188 G A WDR70 Missense_Mutation p.E314K 0.27 tolerated(0.86) benign(0.004) TCGA-85-8277-01 5 41749640 41749640 T A OXCT1 Missense_Mutation p.I470F 0.05 deleterious(0) probably_damaging(0.997) TCGA-85-8277-01 5 66460343 66460343 C A MAST4 Missense_Mutation p.S1779Y 0.57 probably_damaging(0.967) TCGA-85-8277-01 6 101248279 101248279 G A ASCC3 Missense_Mutation p.R342C 0.38 deleterious(0) probably_damaging(0.953) TCGA-85-8277-01 6 117201813 117201813 G A RFX6 Missense_Mutation p.A163T 0.29 deleterious(0) probably_damaging(0.997) TCGA-85-8277-01 6 129486795 129486795 C A LAMA2 Silent p.V427V 0.18 TCGA-85-8277-01 6 131908809 131908809 C G MED23 3'UTR 0.29 TCGA-85-8277-01 6 133004352 133004352 G A VNN1 Missense_Mutation p.S490L 0.24 tolerated_low_confidence(0.11) benign(0.004) TCGA-85-8277-01 6 136582422 136582422 T C BCLAF1 Missense_Mutation p.D913G 0.16 deleterious_low_confidence(0) unknown(0) TCGA-85-8277-01 6 136599511 136599511 C T BCLAF1 Missense_Mutation p.E170K 0.15 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-85-8277-01 6 138531055 138531055 G C KIAA1244 Silent p.L76L 0.23 TCGA-85-8277-01 6 144872134 144872134 C T UTRN Nonsense_Mutation p.Q2282* 0.23 TCGA-85-8277-01 6 152470745 152470745 C G SYNE1 Missense_Mutation p.G8170A 0.27 possibly_damaging(0.824) TCGA-85-8277-01 6 152534762 152534762 C T SYNE1 Silent p.Q7493Q 0.20 TCGA-85-8277-01 6 152652161 152652161 C A SYNE1 Silent p.R4553R 0.25 TCGA-85-8277-01 6 152757200 152757200 C T SYNE1 Missense_Mutation p.A1396T 0.29 possibly_damaging(0.766) TCGA-85-8277-01 6 159462401 159462401 G T TAGAP Silent p.L154L 0.22 TCGA-85-8277-01 6 165711576 165711576 T G C6orf118 Missense_Mutation p.Q317H 0.25 tolerated(0.43) benign(0.009) TCGA-85-8277-01 6 29574171 29574171 G A GABBR1 Missense_Mutation p.L770F 0.12 deleterious(0.04) probably_damaging(0.917) TCGA-85-8277-01 6 29574172 29574172 C A GABBR1 Missense_Mutation p.W769C 0.13 deleterious(0) probably_damaging(0.983) TCGA-85-8277-01 6 49976889 49976889 C A DEFB110 Nonsense_Mutation p.G51* 0.25 TCGA-85-8277-01 6 99991411 99991411 A G CCNC 3'UTR 0.16 TCGA-85-8277-01 7 100284963 100284963 C A GIGYF1 Missense_Mutation p.R147L 0.50 deleterious(0) unknown(0) TCGA-85-8277-01 7 100552590 100552590 A G MUC3A Silent p.K447K 0.08 TCGA-85-8277-01 7 120906279 120906279 A T CPED1 Splice_Site p.X771_splice 0.51 TCGA-85-8277-01 7 142566018 142566018 C T EPHB6 Silent p.I646I 0.17 TCGA-85-8277-01 7 142641828 142641828 C A KEL Missense_Mutation p.A439S 0.23 deleterious(0.01) probably_damaging(0.971) TCGA-85-8277-01 7 143053666 143053666 C A FAM131B Nonsense_Mutation p.E354* 0.44 TCGA-85-8277-01 7 143881250 143881250 A T CTAGE4 Missense_Mutation p.Q218H 0.20 tolerated(0.47) benign(0.03) TCGA-85-8277-01 7 146818204 146818204 G T CNTNAP2 Missense_Mutation p.M296I 0.41 tolerated(0.06) benign(0.003) TCGA-85-8277-01 7 23221685 23221685 C G NUPL2 5'UTR 0.08 TCGA-85-8277-01 7 51096958 51096958 C T COBL Missense_Mutation p.R612H 0.22 tolerated(0.13) benign(0.007) TCGA-85-8277-01 7 5348837 5348837 T A TNRC18 Missense_Mutation p.N2851Y 0.51 unknown(0) TCGA-85-8277-01 7 64527356 64527356 A G SNORA22 3'Flank 0.50 TCGA-85-8277-01 7 66458347 66458347 G A SBDS Nonsense_Mutation p.Q106* 0.28 TCGA-85-8277-01 7 72683243 72683243 T A GTF2IRD2P1 RNA 0.16 TCGA-85-8277-01 7 76071180 76071180 C A ZP3 Missense_Mutation p.T361N 0.37 deleterious(0) possibly_damaging(0.791) TCGA-85-8277-01 7 82390736 82390736 T A PCLO Silent p.I5027I 0.11 TCGA-85-8277-01 7 86554874 86554874 C A KIAA1324L Missense_Mutation p.V457F 0.37 tolerated(0.71) possibly_damaging(0.745) TCGA-85-8277-01 7 89937093 89937093 G A C7orf63 Silent p.T825T 0.09 TCGA-85-8277-01 7 95726958 95726958 C G DYNC1I1 3'UTR 0.46 TCGA-85-8277-01 8 110100035 110100035 C T TRHR Silent p.C98C 0.22 TCGA-85-8277-01 8 110457774 110457774 C A PKHD1L1 Silent p.V1892V 0.17 TCGA-85-8277-01 8 121061903 121061903 G A DEPTOR Missense_Mutation p.R397Q 0.18 deleterious(0.02) probably_damaging(0.984) TCGA-85-8277-01 8 133051068 133051068 G A OC90 Silent p.I199I 0.23 TCGA-85-8277-01 8 139164210 139164210 A T FAM135B Silent p.A836A 0.37 TCGA-85-8277-01 8 24324370 24324370 G A ADAM7 Missense_Mutation p.E150K 0.48 tolerated(0.06) possibly_damaging(0.811) TCGA-85-8277-01 8 30614323 30614323 C G UBXN8 RNA 0.43 TCGA-85-8277-01 8 59360109 59360109 A G UBXN2B Silent p.%3D 0.64 TCGA-85-8277-01 8 86358412 86358412 G C CA3 Silent p.L183L 0.50 TCGA-85-8277-01 8 91063904 91063904 G T DECR1 Splice_Site p.X296_splice 0.14 TCGA-85-8277-01 9 104433374 104433374 G C GRIN3A Silent p.T440T 0.17 TCGA-85-8277-01 9 110249695 110249695 C T KLF4 Missense_Mutation p.S327N 0.33 tolerated(0.33) benign(0.001) TCGA-85-8277-01 9 116971987 116971987 G T COL27A1 Silent p.L767L 0.36 TCGA-85-8277-01 9 117087163 117087163 G A ORM1 Missense_Mutation p.G141E 0.32 deleterious(0) probably_damaging(1) TCGA-85-8277-01 9 118982262 118982262 G T PAPPA Missense_Mutation p.M655I 0.18 deleterious(0) benign(0.072) TCGA-85-8277-01 9 120470990 120470990 G T TLR4 Missense_Mutation p.Q81H 0.14 tolerated(0.08) benign(0.026) TCGA-85-8277-01 9 123201945 123201945 C T CDK5RAP2 Missense_Mutation p.G1152R 0.43 tolerated(0.12) probably_damaging(0.998) TCGA-85-8277-01 9 131394506 131394506 C T SPTAN1 Missense_Mutation p.T2288M 0.21 deleterious(0) benign(0.098) TCGA-85-8277-01 9 135763755 135763755 C A C9orf9 Silent p.P142P 0.22 TCGA-85-8277-01 9 139233032 139233032 G T GPSM1 Missense_Mutation p.R280L 0.31 deleterious(0.01) possibly_damaging(0.717) TCGA-85-8277-01 9 139350603 139350603 G A SEC16A Nonsense_Mutation p.R1856* 0.48 TCGA-85-8277-01 9 139400009 139400009 C G NOTCH1 Missense_Mutation p.E1447Q 0.19 tolerated(0.45) possibly_damaging(0.718) TCGA-85-8277-01 9 2058296 2058296 C T SMARCA2 Silent p.Y451Y 0.62 TCGA-85-8277-01 9 21971175 21971182 CTCCGCCA - CDKN2A Frame_Shift_Del p.V59Afs*58 0.56 TCGA-85-8277-01 9 35044510 35044510 G A C9orf131 Silent p.G628G 0.57 TCGA-85-8277-01 9 77378032 77378032 G A TRPM6 Silent p.F1185F 0.12 TCGA-85-8277-01 9 90503608 90503608 G A SPATA31E1 Nonsense_Mutation p.W1402* 0.14 TCGA-85-8277-01 X 106841202 106841202 G A FRMPD3 Missense_Mutation p.R731H 0.68 tolerated(0.16) benign(0.002) TCGA-85-8277-01 X 128615128 128615128 C T SMARCA1 Missense_Mutation p.R751Q 0.41 deleterious(0) probably_damaging(0.983) TCGA-85-8277-01 X 132439930 132439930 C T GPC4 Missense_Mutation p.G342E 0.68 deleterious(0) probably_damaging(1) TCGA-85-8277-01 X 139586666 139586666 G A SOX3 Missense_Mutation p.P187L 0.73 deleterious(0) probably_damaging(0.998) TCGA-85-8277-01 X 14748660 14748660 A T GLRA2 3'UTR 0.73 TCGA-85-8277-01 X 3242843 3242843 C G MXRA5 Missense_Mutation p.E295Q 0.21 tolerated(0.06) benign(0.432) TCGA-85-8277-01 X 37027532 37027532 G C FAM47C Missense_Mutation p.G350A 0.70 tolerated(0.29) benign(0.327) TCGA-85-8277-01 X 44703791 44703791 C A DUSP21 Nonsense_Mutation p.S138* 0.64 TCGA-85-8277-01 X 48049706 48049706 T G SSX5 Splice_Site p.X152_splice 0.70 TCGA-85-8277-01 X 50052909 50052909 A G CCNB3 Silent p.V580V 0.72 TCGA-85-8277-01 X 69283070 69283070 C G OTUD6A Silent p.P232P 0.53 TCGA-85-8277-01 X 72673421 72673421 G A CDX4 Missense_Mutation p.E191K 0.77 deleterious(0.01) probably_damaging(0.926) TCGA-85-8277-01 X 85950053 85950053 A G DACH2 Missense_Mutation p.K268E 0.59 deleterious(0.05) benign(0.323) TCGA-85-8277-01 X 86772847 86772847 G T KLHL4 5'UTR 0.57 TCGA-85-8277-01 X 91090468 91090468 G A PCDH11X 5'UTR 0.67 TCGA-85-8277-01 X 9716687 9716687 T C GPR143 Missense_Mutation p.I159V 0.94 tolerated(0.14) benign(0.023) TCGA-85-8287-01 10 127753549 127753549 A G ADAM12 Missense_Mutation p.C482R 0.12 deleterious(0) probably_damaging(0.994) TCGA-85-8287-01 10 128788844 128788844 A T DOCK1 Silent p.T150T 0.12 TCGA-85-8287-01 10 32561994 32561994 T A EPC1 Missense_Mutation p.Q627L 0.40 tolerated(0.35) benign(0.085) TCGA-85-8287-01 10 46122312 46122312 T C ZFAND4 Missense_Mutation p.D320G 0.07 tolerated(0.09) benign(0.001) TCGA-85-8287-01 10 46143983 46143983 C A ZFAND4 Splice_Site p.X110_splice 0.26 TCGA-85-8287-01 10 49400815 49400815 C A FRMPD2 Missense_Mutation p.G693C 0.20 deleterious(0.04) benign(0.113) TCGA-85-8287-01 10 49400816 49400816 C T FRMPD2 Silent p.Q692Q 0.22 TCGA-85-8287-01 10 54527921 54527921 C A MBL2 Silent p.L241L 0.09 TCGA-85-8287-01 10 61007400 61007400 T G FAM13C Missense_Mutation p.K578Q 0.23 deleterious(0) probably_damaging(1) TCGA-85-8287-01 10 6553128 6553129 - T PRKCQ Frame_Shift_Ins p.P50Afs*12 0.09 TCGA-85-8287-01 10 71690244 71690244 A G COL13A1 Missense_Mutation p.N529S 0.31 tolerated(0.75) benign(0.001) TCGA-85-8287-01 10 79571781 79571781 T A DLG5 Missense_Mutation p.Q1408L 0.25 deleterious(0) probably_damaging(0.986) TCGA-85-8287-01 10 8100349 8100349 C A GATA3 Missense_Mutation p.T108N 0.10 tolerated(0.51) benign(0.001) TCGA-85-8287-01 10 98118687 98118687 C A OPALIN 5'UTR 0.25 TCGA-85-8287-01 11 100095491 100095491 G T CNTN5 Missense_Mutation p.R651M 0.21 tolerated(0.87) probably_damaging(1) TCGA-85-8287-01 11 117105068 117105068 C G RNF214 Nonsense_Mutation p.S27* 0.14 TCGA-85-8287-01 11 119029360 119029360 T G ABCG4 Missense_Mutation p.F421V 0.13 deleterious(0.04) benign(0.027) TCGA-85-8287-01 11 120925800 120925800 A C TBCEL Silent p.T165T 0.13 TCGA-85-8287-01 11 123756120 123756120 A T TMEM225 Missense_Mutation p.S5T 0.31 tolerated(0.42) possibly_damaging(0.483) TCGA-85-8287-01 11 123814525 123814525 A T OR6T1 Silent p.T7T 0.24 TCGA-85-8287-01 11 124294067 124294067 G T OR8B4 Missense_Mutation p.S234Y 0.26 deleterious_low_confidence(0.04) possibly_damaging(0.691) TCGA-85-8287-01 11 124757048 124757048 G T ROBO4 Missense_Mutation p.L754I 0.20 tolerated(0.45) benign(0.364) TCGA-85-8287-01 11 15212252 15212252 G C INSC Silent p.L242L 0.22 TCGA-85-8287-01 11 5444377 5444377 C T OR51Q1 Missense_Mutation p.S316L 0.36 tolerated(0.18) benign(0) TCGA-85-8287-01 11 58275468 58275468 C T OR5B21 Silent p.L37L 0.15 TCGA-85-8287-01 11 6291976 6291976 G C CCKBR Missense_Mutation p.D252H 0.24 deleterious(0) benign(0.403) TCGA-85-8287-01 11 64863791 64863791 G A VPS51 Silent p.E23E 0.31 TCGA-85-8287-01 11 64884165 64884165 G A ZNHIT2 Missense_Mutation p.R321W 0.28 deleterious(0) probably_damaging(0.965) TCGA-85-8287-01 11 7064022 7064022 G C NLRP14 Missense_Mutation p.L255F 0.21 deleterious(0) probably_damaging(1) TCGA-85-8287-01 11 7111057 7111057 G T RBMXL2 Nonsense_Mutation p.G236* 0.25 TCGA-85-8287-01 11 7111058 7111058 G T RBMXL2 Missense_Mutation p.G236V 0.24 deleterious(0) benign(0.001) TCGA-85-8287-01 11 71949320 71949320 G T INPPL1 Nonsense_Mutation p.E1234* 0.18 TCGA-85-8287-01 11 71949321 71949321 A G INPPL1 Missense_Mutation p.E1234G 0.18 tolerated(0.05) unknown(0) TCGA-85-8287-01 11 78381256 78381256 T C TENM4 Missense_Mutation p.N2045S 0.29 deleterious(0.04) benign(0.059) TCGA-85-8287-01 11 78440608 78440608 A C TENM4 Silent p.S1073S 0.10 TCGA-85-8287-01 11 89774297 89774297 G T TRIM49C Missense_Mutation p.C313F 0.18 tolerated(0.7) benign(0.013) TCGA-85-8287-01 12 100707284 100707284 A G SCYL2 Missense_Mutation p.T313A 0.14 tolerated(0.53) benign(0.003) TCGA-85-8287-01 12 101555809 101555809 T C SLC5A8 Missense_Mutation p.S525G 0.14 tolerated(0.5) possibly_damaging(0.488) TCGA-85-8287-01 12 108634148 108634148 G A WSCD2 Missense_Mutation p.R391H 0.14 deleterious(0) possibly_damaging(0.755) TCGA-85-8287-01 12 108686661 108686661 C T CMKLR1 Missense_Mutation p.V27I 0.32 tolerated(0.41) benign(0.003) TCGA-85-8287-01 12 109182385 109182385 G A SSH1 Silent p.S843S 0.23 TCGA-85-8287-01 12 11183306 11183306 T A TAS2R31 Missense_Mutation p.Q210L 0.08 deleterious(0) benign(0.314) TCGA-85-8287-01 12 113596676 113596676 T A CCDC42B 3'UTR 0.34 TCGA-85-8287-01 12 119916944 119916944 A G CCDC60 Silent p.T129T 0.12 TCGA-85-8287-01 12 133331417 133331417 C A ANKLE2 Missense_Mutation p.G162C 0.24 deleterious(0) probably_damaging(0.993) TCGA-85-8287-01 12 28123141 28123141 C T PTHLH 5'UTR 0.36 TCGA-85-8287-01 12 30784836 30784836 C T IPO8 Silent p.T1003T 0.12 TCGA-85-8287-01 12 40668743 40668743 T A LRRK2 Missense_Mutation p.I630N 0.26 deleterious(0) benign(0.323) TCGA-85-8287-01 12 41410671 41410671 G C CNTN1 Missense_Mutation p.G791A 0.21 deleterious(0) probably_damaging(1) TCGA-85-8287-01 12 42554482 42554482 C T YAF2 Missense_Mutation p.S175N 0.08 tolerated(0.16) benign(0.006) TCGA-85-8287-01 12 44338025 44338025 G T TMEM117 Missense_Mutation p.R97L 0.22 deleterious(0.01) possibly_damaging(0.499) TCGA-85-8287-01 12 4479711 4479711 G A FGF23 Missense_Mutation p.S185L 0.31 tolerated(0.36) benign(0) TCGA-85-8287-01 12 52309818 52309818 A T ACVRL1 Splice_Site p.X350_splice 0.33 TCGA-85-8287-01 12 58123438 58123438 C A AGAP2 Silent p.S847S 0.12 TCGA-85-8287-01 12 6161798 6161798 C A VWF Silent p.G699G 0.28 TCGA-85-8287-01 12 9254202 9254202 A G A2M Silent p.H445H 0.24 TCGA-85-8287-01 12 99166821 99166821 A G ANKS1B Missense_Mutation p.V1168A 0.10 deleterious(0) probably_damaging(0.976) TCGA-85-8287-01 13 114514866 114514866 A G TMEM255B Missense_Mutation p.Y324C 0.30 deleterious(0) probably_damaging(0.986) TCGA-85-8287-01 13 24465849 24465849 C A C1QTNF9B Missense_Mutation p.G194V 0.10 deleterious(0) probably_damaging(0.988) TCGA-85-8287-01 13 24895485 24895485 G T AL359736.1 Missense_Mutation p.P28T 0.22 deleterious(0) possibly_damaging(0.634) TCGA-85-8287-01 13 64321040 64321040 A G AL445989.1 Missense_Mutation p.Y36C 0.16 unknown(0) TCGA-85-8287-01 14 105408513 105408513 A T AHNAK2 Silent p.S4425S 0.26 TCGA-85-8287-01 14 23884588 23884588 A T MYH7 Splice_Site p.X1761_splice 0.05 TCGA-85-8287-01 14 47504353 47504353 C T MDGA2 Missense_Mutation p.M560I 0.03 tolerated(0.35) benign(0.009) TCGA-85-8287-01 14 77710762 77710762 T A TMEM63C Missense_Mutation p.V471D 0.27 deleterious(0) probably_damaging(1) TCGA-85-8287-01 14 90867644 90867644 G T CALM1 Missense_Mutation p.G26C 0.31 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-85-8287-01 14 90867645 90867645 G T CALM1 Missense_Mutation p.G26V 0.30 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-85-8287-01 15 25959132 25959132 G T ATP10A Missense_Mutation p.A678D 0.30 tolerated(0.36) benign(0.008) TCGA-85-8287-01 15 45003745 45003745 A G B2M Translation_Start_Site p.M1? 0.36 deleterious(0) possibly_damaging(0.678) TCGA-85-8287-01 15 74179974 74179974 G C TBC1D21 Missense_Mutation p.G264A 0.23 deleterious(0.03) probably_damaging(0.953) TCGA-85-8287-01 15 75134497 75134497 C A ULK3 Missense_Mutation p.A95S 0.34 tolerated(1) benign(0.032) TCGA-85-8287-01 16 10273944 10273944 C A GRIN2A Missense_Mutation p.V109L 0.16 tolerated(0.18) benign(0.061) TCGA-85-8287-01 16 11010232 11010232 C A CIITA Missense_Mutation p.A993E 0.13 deleterious(0) possibly_damaging(0.564) TCGA-85-8287-01 16 20548685 20548685 C G ACSM2B Splice_Site p.X544_splice 0.15 TCGA-85-8287-01 16 21273455 21273455 C G CRYM Missense_Mutation p.W233S 0.14 deleterious(0.04) probably_damaging(0.991) TCGA-85-8287-01 16 2136247 2136247 G A TSC2 Silent p.T1572T 0.12 TCGA-85-8287-01 16 23614901 23614901 C A PALB2 Missense_Mutation p.C1147F 0.27 deleterious(0) probably_damaging(1) TCGA-85-8287-01 16 26147362 26147362 C T HS3ST4 Silent p.F388F 0.21 TCGA-85-8287-01 16 28841986 28841986 G T ATXN2L Missense_Mutation p.G362V 0.08 tolerated(0.09) probably_damaging(0.982) TCGA-85-8287-01 16 32077558 32077558 C A IGHV3OR16-9 Missense_Mutation p.T58K 0.12 tolerated_low_confidence(0.17) benign(0.045) TCGA-85-8287-01 16 50707434 50707434 G C SNX20 Nonsense_Mutation p.Y278* 0.30 TCGA-85-8287-01 16 56933523 56933523 T C SLC12A3 Silent p.A914A 0.14 TCGA-85-8287-01 16 58620600 58620600 G A CNOT1 Silent p.D162D 0.14 TCGA-85-8287-01 16 67401196 67401196 A G LRRC36 Missense_Mutation p.H344R 0.25 deleterious_low_confidence(0.03) possibly_damaging(0.462) TCGA-85-8287-01 16 67974274 67974274 C A LCAT Missense_Mutation p.D286Y 0.21 deleterious(0) possibly_damaging(0.673) TCGA-85-8287-01 16 68404986 68404986 C G SMPD3 Missense_Mutation p.D367H 0.21 deleterious(0) probably_damaging(0.998) TCGA-85-8287-01 16 74990379 74990379 C T WDR59 Silent p.A78A 0.15 TCGA-85-8287-01 16 75669590 75669590 C T KARS Silent p.L289L 0.11 TCGA-85-8287-01 17 10265724 10265724 C A MYH13 Missense_Mutation p.A101S 0.27 tolerated(0.99) benign(0.145) TCGA-85-8287-01 17 10310256 10310256 T C MYH8 Missense_Mutation p.H669R 0.26 deleterious(0.01) possibly_damaging(0.79) TCGA-85-8287-01 17 1703246 1703246 A G SMYD4 Missense_Mutation p.L481S 0.42 tolerated(0.07) benign(0.018) TCGA-85-8287-01 17 38133102 38133102 G T GSDMA Missense_Mutation p.D377Y 0.32 deleterious(0.04) possibly_damaging(0.815) TCGA-85-8287-01 17 40865301 40865301 G C EZH1 Missense_Mutation p.A377G 0.11 tolerated(0.35) benign(0) TCGA-85-8287-01 17 42327832 42327832 A T SLC4A1 Silent p.P910P 0.09 TCGA-85-8287-01 17 42476488 42476488 C T GPATCH8 Missense_Mutation p.R986Q 0.10 deleterious(0.03) unknown(0) TCGA-85-8287-01 17 57952007 57952007 T G TUBD1 Missense_Mutation p.N276T 0.11 tolerated(0.29) benign(0.005) TCGA-85-8287-01 17 7369891 7369891 T C ZBTB4 Missense_Mutation p.N77S 0.42 unknown(0) TCGA-85-8287-01 17 7578553 7578553 T C TP53 Missense_Mutation p.Y126C 0.21 deleterious(0) probably_damaging(1) TCGA-85-8287-01 18 335115 335115 C G COLEC12 Silent p.A481A 0.18 TCGA-85-8287-01 18 8069904 8069904 A G PTPRM Silent p.P451P 0.37 TCGA-85-8287-01 19 1014303 1014303 C A TMEM259 Missense_Mutation p.G132V 0.33 tolerated(0.23) benign(0.102) TCGA-85-8287-01 19 11141552 11141552 G T SMARCA4 Missense_Mutation p.D1177Y 0.31 probably_damaging(0.997) TCGA-85-8287-01 19 13418941 13418941 C A CACNA1A Missense_Mutation p.G636C 0.15 probably_damaging(0.999) TCGA-85-8287-01 19 36605297 36605297 G C POLR2I Nonsense_Mutation p.Y44* 0.13 TCGA-85-8287-01 19 36896572 36896572 A T ZFP82 Missense_Mutation p.C47S 0.44 tolerated(0.33) benign(0.001) TCGA-85-8287-01 19 47423445 47423445 G T ARHGAP35 Nonsense_Mutation p.E505* 0.35 TCGA-85-8287-01 19 51581355 51581355 A G KLK14 Missense_Mutation p.M238T 0.11 tolerated(0.55) benign(0.216) TCGA-85-8287-01 19 55644271 55644271 G A TNNT1 3'UTR 0.40 TCGA-85-8287-01 19 56901458 56901458 G - ZNF582 Frame_Shift_Del p.V49Ffs*6 0.14 TCGA-85-8287-01 19 5727282 5727282 C T CATSPERD Missense_Mutation p.R44C 0.14 tolerated(0.17) possibly_damaging(0.533) TCGA-85-8287-01 19 59069715 59069715 T C UBE2M Missense_Mutation p.K12E 0.34 tolerated(0.06) benign(0.031) TCGA-85-8287-01 1 109198276 109198276 T C HENMT1 Silent p.L65L 0.16 TCGA-85-8287-01 1 118514519 118514519 A T SPAG17 Missense_Mutation p.V2098E 0.19 deleterious(0) probably_damaging(0.997) TCGA-85-8287-01 1 151402142 151402142 G A POGZ Nonsense_Mutation p.Q169* 0.04 TCGA-85-8287-01 1 155264278 155264278 C T PKLR Silent p.V320V 0.27 TCGA-85-8287-01 1 158609733 158609733 T C SPTA1 Missense_Mutation p.K1601R 0.23 tolerated(0.32) benign(0.049) TCGA-85-8287-01 1 161681083 161681083 A G FCRLA Silent p.P129P 0.10 TCGA-85-8287-01 1 17402188 17402188 T A PADI2 Missense_Mutation p.I481F 0.16 deleterious(0.03) benign(0.126) TCGA-85-8287-01 1 17682953 17682953 G C PADI4 Missense_Mutation p.K519N 0.09 tolerated(0.16) benign(0.025) TCGA-85-8287-01 1 179077317 179077317 C T ABL2 Missense_Mutation p.A1029T 0.29 tolerated_low_confidence(0.39) benign(0.003) TCGA-85-8287-01 1 201184844 201184844 T A IGFN1 Missense_Mutation p.L3058Q 0.20 possibly_damaging(0.804) TCGA-85-8287-01 1 204412561 204412561 G C PIK3C2B Missense_Mutation p.A1011G 0.25 tolerated(0.21) benign(0.046) TCGA-85-8287-01 1 204944412 204944412 C A NFASC Silent p.I524I 0.05 TCGA-85-8287-01 1 207241638 207241638 T C PFKFB2 Missense_Mutation p.L324P 0.10 probably_damaging(1) TCGA-85-8287-01 1 207818603 207818603 C G CR1L Missense_Mutation p.R9G 0.23 tolerated_low_confidence(0.06) benign(0.062) TCGA-85-8287-01 1 223568516 223568516 A G C1orf65 Missense_Mutation p.K567E 0.15 deleterious(0) possibly_damaging(0.725) TCGA-85-8287-01 1 228480306 228480306 C T OBSCN Silent p.N3991N 0.13 TCGA-85-8287-01 1 22925528 22925528 C T EPHA8 Silent p.A792A 0.27 TCGA-85-8287-01 1 229568793 229568793 C A ACTA1 Missense_Mutation p.A24S 0.32 tolerated_low_confidence(0.09) probably_damaging(0.977) TCGA-85-8287-01 1 237057688 237057688 A T MTR Missense_Mutation p.Y1079F 0.14 tolerated(0.4) benign(0.012) TCGA-85-8287-01 1 237872215 237872215 T G RYR2 Missense_Mutation p.L3320W 0.33 probably_damaging(0.984) TCGA-85-8287-01 1 237880669 237880669 G T RYR2 Splice_Site p.X3498_splice 0.09 TCGA-85-8287-01 1 247875614 247875614 G C OR6F1 Silent p.S148S 0.13 TCGA-85-8287-01 1 247875615 247875615 G T OR6F1 Missense_Mutation p.S148Y 0.13 deleterious(0) probably_damaging(0.988) TCGA-85-8287-01 1 248308695 248308695 C A OR2M5 Silent p.A82A 0.09 TCGA-85-8287-01 1 248487805 248487805 G T OR2M7 Silent p.P22P 0.17 TCGA-85-8287-01 1 248637494 248637494 C T OR2T3 Silent p.A281A 0.04 TCGA-85-8287-01 1 248756328 248756328 C - OR2T10 Frame_Shift_Del p.V248Sfs*25 0.13 TCGA-85-8287-01 1 249150610 249150610 G A ZNF692 Missense_Mutation p.P184L 0.28 deleterious(0.04) benign(0.006) TCGA-85-8287-01 1 33563697 33563697 G C ADC Missense_Mutation p.V316L 0.07 tolerated(0.07) benign(0.034) TCGA-85-8287-01 1 3427458 3427458 C A MEGF6 Missense_Mutation p.D375Y 0.14 deleterious(0) probably_damaging(0.971) TCGA-85-8287-01 1 53363141 53363141 C A ECHDC2 Missense_Mutation p.G257W 0.20 deleterious(0) probably_damaging(1) TCGA-85-8287-01 1 57341846 57341846 A G C8A Missense_Mutation p.Y143C 0.17 deleterious(0) possibly_damaging(0.848) TCGA-85-8287-01 1 65858213 65858213 C T DNAJC6 Missense_Mutation p.P523L 0.15 tolerated(0.18) benign(0.412) TCGA-85-8287-01 1 70477603 70477603 C A LRRC7 Silent p.P338P 0.17 TCGA-85-8287-01 1 70614249 70614249 C T LRRC40 Missense_Mutation p.E542K 0.05 tolerated(0.57) benign(0.008) TCGA-85-8287-01 1 76877837 76877837 G A ST6GALNAC3 Missense_Mutation p.G120S 0.21 probably_damaging(0.996) TCGA-85-8287-01 20 21312232 21312232 G A XRN2 Missense_Mutation p.G204R 0.09 deleterious(0) probably_damaging(1) TCGA-85-8287-01 20 23729712 23729712 T C CST1 Missense_Mutation p.T95A 0.26 deleterious(0.05) benign(0.006) TCGA-85-8287-01 20 50400800 50400800 T A SALL4 3'UTR 0.16 TCGA-85-8287-01 20 9546656 9546656 C T PAK7 Missense_Mutation p.G456R 0.05 deleterious(0) probably_damaging(1) TCGA-85-8287-01 21 43863452 43863452 G A UBASH3A Silent p.P554P 0.24 TCGA-85-8287-01 22 17072298 17072298 G A CCT8L2 Silent p.T381T 0.06 TCGA-85-8287-01 2 103068512 103068512 C A IL18RAP Nonsense_Mutation p.Y557* 0.27 TCGA-85-8287-01 2 103090239 103090239 G A SLC9A4 Silent p.V7V 0.28 TCGA-85-8287-01 2 107460084 107460084 C G ST6GAL2 Missense_Mutation p.G117A 0.21 benign(0.176) TCGA-85-8287-01 2 113308559 113308559 C T POLR1B Missense_Mutation p.P248S 0.12 deleterious(0) probably_damaging(0.979) TCGA-85-8287-01 2 127453746 127453746 G C GYPC 3'UTR 0.17 TCGA-85-8287-01 2 141283514 141283514 C A LRP1B Missense_Mutation p.G2642V 0.15 probably_damaging(0.988) TCGA-85-8287-01 2 145187519 145187519 C T ZEB2 Missense_Mutation p.D50N 0.25 tolerated(0.13) benign(0.031) TCGA-85-8287-01 2 152477495 152477495 C T NEB Missense_Mutation p.D3500N 0.16 probably_damaging(1) TCGA-85-8287-01 2 166210742 166210742 G T SCN2A Missense_Mutation p.S987I 0.23 deleterious(0.03) probably_damaging(0.937) TCGA-85-8287-01 2 172584813 172584813 A T DYNC1I2 Splice_Site p.X382_splice 0.31 TCGA-85-8287-01 2 179192983 179192983 G A OSBPL6 Missense_Mutation p.E66K 0.08 tolerated(0.31) probably_damaging(0.969) TCGA-85-8287-01 2 179499303 179499303 G A TTN Nonsense_Mutation p.R14069* 0.08 TCGA-85-8287-01 2 179539046 179539046 G T TTN Missense_Mutation p.P11568H 0.14 TCGA-85-8287-01 2 179590541 179590541 C A TTN Missense_Mutation p.Q6836H 0.09 TCGA-85-8287-01 2 179639836 179639836 G C TTN Missense_Mutation p.P2201R 0.13 TCGA-85-8287-01 2 217124148 217124148 G T MARCH4 Missense_Mutation p.H374N 0.24 tolerated(0.8) benign(0.002) TCGA-85-8287-01 2 219029796 219029796 C - CXCR1 Frame_Shift_Del p.A47Pfs*2 0.11 TCGA-85-8287-01 2 219505447 219505447 C A ZNF142 Nonsense_Mutation p.E1512* 0.17 TCGA-85-8287-01 2 235950948 235950948 A G SH3BP4 Missense_Mutation p.Q512R 0.19 tolerated(0.1) benign(0.065) TCGA-85-8287-01 2 238726654 238726654 T G RBM44 Missense_Mutation p.D365E 0.23 tolerated(0.66) benign(0.008) TCGA-85-8287-01 2 239161612 239161612 C G PER2 Missense_Mutation p.V1018L 0.24 tolerated(0.06) benign(0.034) TCGA-85-8287-01 2 240969750 240969750 G A OR6B2 Missense_Mutation p.L33F 0.05 tolerated(0.19) benign(0.002) TCGA-85-8287-01 2 240985393 240985393 G A OR6B3 Missense_Mutation p.L33F 0.20 tolerated(0.17) benign(0.006) TCGA-85-8287-01 2 242187763 242187763 C A HDLBP Nonsense_Mutation p.E505* 0.12 TCGA-85-8287-01 2 242524075 242524075 C T THAP4 Silent p.T560T 0.12 TCGA-85-8287-01 2 27165526 27165526 G A DPYSL5 Missense_Mutation p.G450S 0.10 deleterious(0.01) benign(0.042) TCGA-85-8287-01 2 27528631 27528631 G T TRIM54 Silent p.L305L 0.21 TCGA-85-8287-01 2 29543724 29543724 C A ALK Missense_Mutation p.C480F 0.04 deleterious(0) probably_damaging(0.999) TCGA-85-8287-01 2 3673667 3673667 G A COLEC11 Intron 0.09 TCGA-85-8287-01 2 56420571 56420571 G A CCDC85A Missense_Mutation p.M412I 0.17 tolerated(0.08) probably_damaging(0.943) TCGA-85-8287-01 2 64189512 64189522 TGCTTCTGAAC - VPS54 Frame_Shift_Del p.R227Lfs*28 0.09 TCGA-85-8287-01 2 64863870 64863870 T C SERTAD2 Missense_Mutation p.M46V 0.16 tolerated(0.16) benign(0.065) TCGA-85-8287-01 2 80529661 80529661 C A LRRTM1 Silent p.V428V 0.20 TCGA-85-8287-01 2 80530832 80530832 C A LRRTM1 Missense_Mutation p.G38V 0.24 tolerated(0.27) benign(0.004) TCGA-85-8287-01 2 85822908 85822908 C A RNF181 Missense_Mutation p.H8N 0.30 deleterious(0.05) possibly_damaging(0.862) TCGA-85-8287-01 3 10106084 10106084 C A FANCD2 Missense_Mutation p.F664L 0.12 deleterious(0) probably_damaging(0.979) TCGA-85-8287-01 3 108672527 108672527 A G GUCA1C Missense_Mutation p.M28T 0.27 tolerated(1) benign(0) TCGA-85-8287-01 3 113497665 113497665 A G ATP6V1A Missense_Mutation p.H22R 0.08 tolerated(0.17) benign(0.003) TCGA-85-8287-01 3 120957908 120957908 G A STXBP5L Silent p.L425L 0.06 TCGA-85-8287-01 3 126207050 126207050 C T UROC1 Missense_Mutation p.G654D 0.21 deleterious(0) probably_damaging(0.999) TCGA-85-8287-01 3 127339936 127339936 A T MCM2 Silent p.S823S 0.21 TCGA-85-8287-01 3 128205141 128205141 C A GATA2 Silent p.G100G 0.30 TCGA-85-8287-01 3 13417892 13417892 C G NUP210 Missense_Mutation p.E398Q 0.25 deleterious(0.01) benign(0.254) TCGA-85-8287-01 3 140185451 140185451 G T CLSTN2 Splice_Site p.X408_splice 0.09 TCGA-85-8287-01 3 142122521 142122521 C T XRN1 Missense_Mutation p.E700K 0.23 tolerated(0.14) benign(0.01) TCGA-85-8287-01 3 146239439 146239439 C A PLSCR1 Missense_Mutation p.W210C 0.16 deleterious(0.02) benign(0.09) TCGA-85-8287-01 3 170198324 170198324 T A SLC7A14 Missense_Mutation p.I583F 0.21 deleterious(0.02) benign(0.288) TCGA-85-8287-01 3 179537661 179537661 G A PEX5L Missense_Mutation p.S309L 0.26 deleterious(0) probably_damaging(0.95) TCGA-85-8287-01 3 185146311 185146311 A C MAP3K13 5'UTR 0.17 TCGA-85-8287-01 3 190993040 190993040 C G UTS2B Splice_Site p.X112_splice 0.20 TCGA-85-8287-01 3 44496629 44496629 T C ZNF445 Missense_Mutation p.D138G 0.34 tolerated(0.06) possibly_damaging(0.822) TCGA-85-8287-01 3 49756350 49756350 G A AMIGO3 Silent p.T183T 0.20 TCGA-85-8287-01 3 71064714 71064722 GAAATCTTC - FOXP1 In_Frame_Del p.E320_F322del 0.20 TCGA-85-8287-01 3 89468425 89468425 G C EPHA3 Missense_Mutation p.K653N 0.06 deleterious(0) probably_damaging(0.997) TCGA-85-8287-01 4 100273886 100273886 T G ADH1C 5'UTR 0.06 TCGA-85-8287-01 4 113568234 113568234 A G LARP7 Missense_Mutation p.I206M 0.08 tolerated(0.14) benign(0.042) TCGA-85-8287-01 4 114238917 114238917 G T ANK2 Silent p.L916L 0.12 TCGA-85-8287-01 4 123329149 123329149 A T ADAD1 Missense_Mutation p.T271S 0.04 tolerated(1) benign(0.035) TCGA-85-8287-01 4 123664042 123664042 C A BBS12 Missense_Mutation p.P332Q 0.06 deleterious(0.02) probably_damaging(0.936) TCGA-85-8287-01 4 153864301 153864301 C T FHDC1 Missense_Mutation p.P31L 0.29 deleterious(0.01) possibly_damaging(0.736) TCGA-85-8287-01 4 159593535 159593535 G C ETFDH 5'UTR 0.34 TCGA-85-8287-01 4 169342918 169342918 G A DDX60L Missense_Mutation p.P796L 0.14 deleterious(0) probably_damaging(0.982) TCGA-85-8287-01 4 26483293 26483293 G T CCKAR Nonsense_Mutation p.Y418* 0.15 TCGA-85-8287-01 4 37857351 37857351 A C PGM2 Silent p.P575P 0.25 TCGA-85-8287-01 4 70824657 70824657 C G CSN2 Missense_Mutation p.K38N 0.07 tolerated(0.31) benign(0.005) TCGA-85-8287-01 4 71347157 71347157 A G MUC7 Silent p.P232P 0.07 TCGA-85-8287-01 4 77227934 77227934 C T FAM47E-STBD1 Silent p.V4V 0.23 TCGA-85-8287-01 4 77228052 77228052 C G FAM47E-STBD1 Missense_Mutation p.L44V 0.19 tolerated(0.55) benign(0.038) TCGA-85-8287-01 4 77228082 77228082 C G FAM47E-STBD1 Missense_Mutation p.Q54E 0.24 tolerated(1) benign(0.003) TCGA-85-8287-01 4 77917665 77917665 G A SEPT11 Missense_Mutation p.G39R 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-85-8287-01 4 98762021 98762021 A C STPG2 Missense_Mutation p.H369Q 0.45 tolerated(0.14) benign(0.044) TCGA-85-8287-01 5 137681212 137681212 G C FAM53C Missense_Mutation p.D279H 0.12 tolerated(0.13) probably_damaging(0.979) TCGA-85-8287-01 5 145557180 145557180 C G LARS Missense_Mutation p.E19Q 0.06 tolerated(0.31) benign(0.016) TCGA-85-8287-01 5 154278167 154278167 C A GEMIN5 Missense_Mutation p.A1060S 0.30 tolerated(0.19) benign(0.075) TCGA-85-8287-01 5 168201373 168201373 C T SLIT3 Missense_Mutation p.A388T 0.17 deleterious(0.01) possibly_damaging(0.887) TCGA-85-8287-01 5 19473617 19473617 G A CDH18 Silent p.L697L 0.09 TCGA-85-8287-01 5 3599664 3599664 A G IRX1 Missense_Mutation p.E201G 0.12 deleterious(0) probably_damaging(0.932) TCGA-85-8287-01 5 58285748 58285748 T C PDE4D Splice_Site p.X430_splice 0.12 TCGA-85-8287-01 5 60368966 60368966 G A NDUFAF2 Missense_Mutation p.E48K 0.14 tolerated(0.19) benign(0.428) TCGA-85-8287-01 5 7867831 7867831 C T FASTKD3 Missense_Mutation p.M122I 0.14 deleterious(0.01) benign(0.001) TCGA-85-8287-01 5 7867903 7867903 C G FASTKD3 Missense_Mutation p.E98D 0.13 tolerated(1) benign(0.001) TCGA-85-8287-01 5 89989881 89989881 G C GPR98 Silent p.L2436L 0.23 TCGA-85-8287-01 6 110778178 110778178 G T SLC22A16 Silent p.I32I 0.22 TCGA-85-8287-01 6 12122801 12122801 G C HIVEP1 Missense_Mutation p.G925R 0.12 deleterious(0.03) probably_damaging(0.992) TCGA-85-8287-01 6 12122987 12122987 G T HIVEP1 Nonsense_Mutation p.G987* 0.16 TCGA-85-8287-01 6 12123123 12123123 G T HIVEP1 Missense_Mutation p.R1032M 0.15 deleterious(0) probably_damaging(0.999) TCGA-85-8287-01 6 12123167 12123167 G A HIVEP1 Missense_Mutation p.E1047K 0.19 deleterious(0.04) benign(0.271) TCGA-85-8287-01 6 12124295 12124295 G C HIVEP1 Missense_Mutation p.E1423Q 0.22 deleterious(0) probably_damaging(1) TCGA-85-8287-01 6 12125266 12125266 G A HIVEP1 Silent p.R1746R 0.23 TCGA-85-8287-01 6 129511428 129511428 G T LAMA2 Missense_Mutation p.D516Y 0.29 deleterious(0.03) possibly_damaging(0.852) TCGA-85-8287-01 6 129807758 129807758 G A LAMA2 Missense_Mutation p.R2630Q 0.09 deleterious(0) probably_damaging(1) TCGA-85-8287-01 6 131997917 131997917 G T ENPP3 Missense_Mutation p.W305L 0.14 deleterious(0) probably_damaging(0.999) TCGA-85-8287-01 6 143093707 143093707 G C HIVEP2 Missense_Mutation p.I723M 0.06 tolerated(0.43) benign(0.005) TCGA-85-8287-01 6 152555063 152555063 C T SYNE1 Silent p.L6855L 0.11 TCGA-85-8287-01 6 154489081 154489081 T C IPCEF1 Missense_Mutation p.I360V 0.17 tolerated(0.12) benign(0.159) TCGA-85-8287-01 6 155577757 155577757 G C TIAM2 Missense_Mutation p.E1536D 0.38 tolerated(0.56) benign(0.003) TCGA-85-8287-01 6 165715405 165715405 C A C6orf118 Missense_Mutation p.A136S 0.22 tolerated(0.16) benign(0.067) TCGA-85-8287-01 6 24596448 24596448 C G KIAA0319 Missense_Mutation p.E152Q 0.28 tolerated(0.06) possibly_damaging(0.701) TCGA-85-8287-01 6 26598494 26598494 A G ABT1 Missense_Mutation p.Y147C 0.19 deleterious(0) probably_damaging(0.995) TCGA-85-8287-01 6 27215736 27215736 T C PRSS16 Missense_Mutation p.L49P 0.11 tolerated(0.18) benign(0.006) TCGA-85-8287-01 6 30860874 30860874 G A DDR1 Missense_Mutation p.G377R 0.05 tolerated(0.52) benign(0.195) TCGA-85-8287-01 6 31615542 31615542 G A BAG6 Missense_Mutation p.P211L 0.26 tolerated(0.09) benign(0.001) TCGA-85-8287-01 6 33287811 33287811 T C DAXX Missense_Mutation p.D481G 0.14 tolerated(0.15) benign(0.006) TCGA-85-8287-01 6 35715127 35715127 A T ARMC12 Silent p.P205P 0.15 TCGA-85-8287-01 6 4073534 4073534 T C FAM217A Missense_Mutation p.N93D 0.22 tolerated(0.19) benign(0.023) TCGA-85-8287-01 6 41035010 41035010 C G OARD1 3'UTR 0.24 TCGA-85-8287-01 6 43227402 43227402 G T TTBK1 Missense_Mutation p.R461M 0.25 probably_damaging(0.984) TCGA-85-8287-01 6 46214638 46214638 C A RCAN2 Missense_Mutation p.D140Y 0.05 tolerated(0.08) probably_damaging(0.974) TCGA-85-8287-01 6 46802458 46802458 G T MEP1A Missense_Mutation p.D585Y 0.29 deleterious(0) probably_damaging(0.991) TCGA-85-8287-01 6 49421464 49421464 G C MUT Missense_Mutation p.S306C 0.10 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-85-8287-01 6 49456155 49456155 G C CENPQ Missense_Mutation p.V190L 0.20 tolerated(0.9) benign(0.058) TCGA-85-8287-01 6 51613013 51613013 T C PKHD1 Missense_Mutation p.K3134R 0.26 tolerated(0.3) benign(0.159) TCGA-85-8287-01 6 51930872 51930872 A G PKHD1 Missense_Mutation p.I261T 0.11 deleterious(0.01) probably_damaging(0.911) TCGA-85-8287-01 6 55216096 55216096 T C GFRAL Missense_Mutation p.V139A 0.23 deleterious(0) possibly_damaging(0.889) TCGA-85-8287-01 6 84925132 84925132 G T KIAA1009 Missense_Mutation p.T124K 0.06 deleterious(0) probably_damaging(0.999) TCGA-85-8287-01 7 100483888 100483888 C T SRRT Silent p.S493S 0.05 TCGA-85-8287-01 7 101188735 101188735 G A COL26A1 Missense_Mutation p.A274T 0.63 tolerated(0.47) benign(0.054) TCGA-85-8287-01 7 105662748 105662748 T A CDHR3 Missense_Mutation p.W644R 0.45 tolerated(0.09) benign(0.037) TCGA-85-8287-01 7 115580845 115580845 A G TFEC Silent p.S268S 0.23 TCGA-85-8287-01 7 121650444 121650444 C A PTPRZ1 Missense_Mutation p.D448E 0.16 tolerated(0.12) probably_damaging(0.996) TCGA-85-8287-01 7 126173726 126173726 C G GRM8 Missense_Mutation p.Q570H 0.14 tolerated(0.44) benign(0.004) TCGA-85-8287-01 7 139636026 139636026 G T TBXAS1 Missense_Mutation p.V125F 0.20 deleterious(0) possibly_damaging(0.644) TCGA-85-8287-01 7 151945000 151945000 G A KMT2C Missense_Mutation p.P840L 0.04 probably_damaging(0.999) TCGA-85-8287-01 7 29519933 29519933 C G CHN2 Missense_Mutation p.N205K 0.08 tolerated(0.33) benign(0.132) TCGA-85-8287-01 7 35013200 35013200 C A DPY19L1 Missense_Mutation p.W207C 0.19 deleterious(0.02) probably_damaging(0.992) TCGA-85-8287-01 7 38389092 38389092 G C TRGV5 Nonsense_Mutation p.S73* 0.17 TCGA-85-8287-01 7 44149693 44149693 G - AEBP1 Frame_Shift_Del p.A412Hfs*33 0.10 TCGA-85-8287-01 7 50129237 50129237 T C ZPBP Missense_Mutation p.T66A 0.22 tolerated(0.82) benign(0.004) TCGA-85-8287-01 7 55238043 55238043 A G EGFR Intron 0.10 TCGA-85-8287-01 7 63720694 63720694 G T ZNF679 Missense_Mutation p.M45I 0.32 deleterious(0.03) benign(0.016) TCGA-85-8287-01 7 80299318 80299318 C A CD36 Missense_Mutation p.F266L 0.05 tolerated(0.1) possibly_damaging(0.491) TCGA-85-8287-01 7 87476360 87476360 G C SLC25A40 Missense_Mutation p.L179V 0.16 tolerated(0.31) benign(0.369) TCGA-85-8287-01 7 94050330 94050330 G A COL1A2 Missense_Mutation p.G769S 0.55 unknown(0) TCGA-85-8287-01 7 94050331 94050331 G T COL1A2 Missense_Mutation p.G769V 0.54 unknown(0) TCGA-85-8287-01 7 99569616 99569616 C A AZGP1 Silent p.L30L 0.48 TCGA-85-8287-01 8 113246669 113246669 G A CSMD3 Silent p.R3555R 0.30 TCGA-85-8287-01 8 113960107 113960107 C T CSMD3 Splice_Site p.X474_splice 0.23 TCGA-85-8287-01 8 130867982 130867982 T A FAM49B Nonsense_Mutation p.R105* 0.39 TCGA-85-8287-01 8 17133935 17133935 G A VPS37A Missense_Mutation p.M224I 0.25 tolerated(0.19) benign(0.012) TCGA-85-8287-01 8 22009088 22009088 G A LGI3 Missense_Mutation p.A248V 0.16 tolerated(1) benign(0.027) TCGA-85-8287-01 8 22009089 22009089 C G LGI3 Missense_Mutation p.A248P 0.17 deleterious(0.02) benign(0.16) TCGA-85-8287-01 8 30945356 30945356 G T WRN Missense_Mutation p.R499I 0.18 tolerated(0.14) benign(0.052) TCGA-85-8287-01 8 37796359 37796359 C A GOT1L1 Silent p.V52V 0.34 TCGA-85-8287-01 8 41122994 41122994 T A SFRP1 Missense_Mutation p.I213L 0.46 deleterious(0.01) benign(0.121) TCGA-85-8287-01 8 642534 642534 G A ERICH1 Missense_Mutation p.P83L 0.15 tolerated(0.05) benign(0.13) TCGA-85-8287-01 8 68111158 68111158 T C ARFGEF1 3'UTR 0.37 TCGA-85-8287-01 8 74894532 74894532 G A TMEM70 3'UTR 0.18 TCGA-85-8287-01 8 81733769 81733769 G C ZNF704 Missense_Mutation p.Q21E 0.34 tolerated_low_confidence(0.05) benign(0.053) TCGA-85-8287-01 8 93029501 93029501 G A RUNX1T1 Missense_Mutation p.P71L 0.25 deleterious(0.05) benign(0.117) TCGA-85-8287-01 9 127549517 127549517 G T OLFML2A Missense_Mutation p.K118N 0.33 deleterious(0) probably_damaging(0.991) TCGA-85-8287-01 9 127549518 127549518 G T OLFML2A Splice_Site p.X118_splice 0.33 TCGA-85-8287-01 9 130913968 130913980 CGGCGAGTTCACG - LCN2 Frame_Shift_Del p.G110Wfs*10 0.21 TCGA-85-8287-01 9 140948357 140948357 C T CACNA1B Silent p.Y1289Y 0.28 TCGA-85-8287-01 9 72071272 72071272 C T APBA1 Missense_Mutation p.R560H 0.05 deleterious(0.01) probably_damaging(0.97) TCGA-85-8287-01 9 77415238 77415238 A C TRPM6 Missense_Mutation p.C724G 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-85-8287-01 X 107816843 107816843 C A COL4A5 Missense_Mutation p.P169T 0.48 unknown(0) TCGA-85-8287-01 X 138687088 138687088 A T MCF2 Missense_Mutation p.L614Q 0.06 deleterious(0) probably_damaging(1) TCGA-85-8287-01 X 138687089 138687089 G A MCF2 Silent p.L614L 0.07 TCGA-85-8287-01 X 151869928 151869928 G T MAGEA6 Silent p.L206L 0.42 TCGA-85-8287-01 X 151869929 151869929 G T MAGEA6 Missense_Mutation p.A207S 0.42 tolerated(0.1) benign(0.155) TCGA-85-8287-01 X 152858167 152858167 G C FAM58A Missense_Mutation p.L150V 0.20 tolerated(0.23) benign(0.045) TCGA-85-8287-01 X 153035902 153035902 G A PLXNB3 Splice_Site p.X655_splice 0.21 TCGA-85-8287-01 X 15790623 15790623 C G CA5B Missense_Mutation p.I115M 0.10 deleterious(0.01) probably_damaging(0.959) TCGA-85-8287-01 X 20187588 20187588 C T RPS6KA3 Missense_Mutation p.D459N 0.19 deleterious(0.04) probably_damaging(1) TCGA-85-8287-01 X 30254183 30254183 G A MAGEB3 Missense_Mutation p.A48T 0.16 tolerated(0.59) benign(0.405) TCGA-85-8287-01 X 30261345 30261345 G C MAGEB4 3'UTR 0.55 TCGA-85-8287-01 X 32398792 32398792 T G DMD Silent p.T1560T 0.08 TCGA-85-8287-01 X 37026603 37026603 C T FAM47C Silent p.F40F 0.38 TCGA-85-8287-01 X 44941823 44941823 A C KDM6A Missense_Mutation p.E1049D 0.07 tolerated(0.07) probably_damaging(0.993) TCGA-85-8287-01 X 5811273 5811273 A T NLGN4X Missense_Mutation p.I679N 0.50 deleterious(0) probably_damaging(0.976) TCGA-85-8287-01 X 73064116 73064116 C A XIST RNA 0.52 TCGA-85-8287-01 X 78426843 78426843 T A GPR174 Missense_Mutation p.S113R 0.44 deleterious(0) probably_damaging(0.993) TCGA-85-8288-01 10 105145112 105145113 GA - TAF5 Frame_Shift_Del p.G565Dfs*3 0.18 TCGA-85-8288-01 10 105951998 105951998 T C WDR96 Missense_Mutation p.N502S 0.24 tolerated(0.18) benign(0.006) TCGA-85-8288-01 10 108469020 108469020 T A SORCS1 Silent p.P368P 0.32 TCGA-85-8288-01 10 111882009 111882009 G T ADD3 Nonsense_Mutation p.E368* 0.38 TCGA-85-8288-01 10 123970400 123970400 C T TACC2 Nonsense_Mutation p.Q2154* 0.28 TCGA-85-8288-01 10 126655279 126655279 G A ZRANB1 Missense_Mutation p.V311I 0.33 tolerated(0.18) benign(0.01) TCGA-85-8288-01 10 129046279 129046279 T A DOCK1 Missense_Mutation p.F931Y 0.22 tolerated(0.5) benign(0.153) TCGA-85-8288-01 10 129676641 129676641 C G CLRN3 Silent p.T151T 0.27 TCGA-85-8288-01 10 27702236 27702236 A C PTCHD3 Nonsense_Mutation p.L315* 0.07 TCGA-85-8288-01 10 31815635 31815635 G C ZEB1 Missense_Mutation p.A941P 0.28 deleterious(0) probably_damaging(0.982) TCGA-85-8288-01 10 327265 327265 T C DIP2C Splice_Site p.X1432_splice 0.25 TCGA-85-8288-01 10 35929590 35929590 C G FZD8 Missense_Mutation p.Q256H 0.06 tolerated(0.1) benign(0.076) TCGA-85-8288-01 10 44111814 44111814 G A ZNF485 Missense_Mutation p.R108Q 0.36 tolerated(0.6) benign(0) TCGA-85-8288-01 10 50122244 50122244 G C LRRC18 5'UTR 0.38 TCGA-85-8288-01 10 50856571 50856571 G T CHAT Missense_Mutation p.G434C 0.27 deleterious(0) probably_damaging(1) TCGA-85-8288-01 10 52390615 52390615 G T RP11-50E11.3 RNA 0.24 TCGA-85-8288-01 10 5242207 5242207 G A AKR1C4 Missense_Mutation p.D50N 0.27 deleterious(0.02) probably_damaging(0.993) TCGA-85-8288-01 10 72357822 72357822 C T PRF1 Missense_Mutation p.G552E 0.29 tolerated(0.06) possibly_damaging(0.573) TCGA-85-8288-01 10 7621857 7621857 C T ITIH5 Missense_Mutation p.A427T 0.25 tolerated(0.08) benign(0.013) TCGA-85-8288-01 10 85984296 85984296 G - LRIT2 Frame_Shift_Del p.L229* 0.26 TCGA-85-8288-01 10 85991803 85991803 C T LRIT1 Silent p.L584L 0.34 TCGA-85-8288-01 10 93221030 93221030 A T HECTD2 Nonsense_Mutation p.K143* 0.19 TCGA-85-8288-01 10 97775996 97775996 T C CC2D2B Silent p.H149H 0.35 TCGA-85-8288-01 11 102708039 102708039 A G MMP3 Silent p.F441F 0.07 TCGA-85-8288-01 11 116691553 116691553 C A APOA4 3'UTR 0.21 TCGA-85-8288-01 11 117060963 117060963 C A SIDT2 Silent p.I525I 0.04 TCGA-85-8288-01 11 121498470 121498470 G A SORL1 Missense_Mutation p.D2191N 0.30 deleterious(0) possibly_damaging(0.907) TCGA-85-8288-01 11 123676345 123676346 - A OR6M1 Frame_Shift_Ins p.C238Lfs*31 0.15 TCGA-85-8288-01 11 124413483 124413483 C T OR8B12 Missense_Mutation p.R23Q 0.21 tolerated_low_confidence(1) benign(0.001) TCGA-85-8288-01 11 124745185 124745185 G A ROBO3 Missense_Mutation p.G751E 0.22 deleterious(0.04) benign(0.367) TCGA-85-8288-01 11 124767068 124767068 G T ROBO4 Missense_Mutation p.Q54K 0.50 tolerated(0.19) benign(0.002) TCGA-85-8288-01 11 125281699 125281699 C T PKNOX2 Nonsense_Mutation p.R292* 0.31 TCGA-85-8288-01 11 125769318 125769318 C T HYLS1 Nonsense_Mutation p.R19* 0.28 TCGA-85-8288-01 11 131240636 131240636 C A NTM 5'UTR 0.40 TCGA-85-8288-01 11 34073935 34073935 C T CAPRIN1 Intron 0.45 TCGA-85-8288-01 11 43602963 43602963 T A MIR129-2 RNA 0.58 TCGA-85-8288-01 11 46748366 46748366 C G F2 Missense_Mutation p.A370G 0.29 deleterious(0.02) benign(0.195) TCGA-85-8288-01 11 55594966 55594966 C G OR5L2 Missense_Mutation p.A91G 0.21 tolerated(0.09) benign(0.002) TCGA-85-8288-01 11 55652961 55652961 G T TRIM51 Missense_Mutation p.M19I 0.23 deleterious(0.03) possibly_damaging(0.61) TCGA-85-8288-01 11 56185513 56185513 G T OR5R1 Missense_Mutation p.L66M 0.16 deleterious(0) probably_damaging(0.921) TCGA-85-8288-01 11 56310716 56310716 G A OR5M11 Silent p.G6G 0.22 TCGA-85-8288-01 11 57313433 57313433 C A SMTNL1 Missense_Mutation p.R351S 0.27 deleterious(0.01) probably_damaging(0.986) TCGA-85-8288-01 11 5905922 5905922 T C OR52E4 Missense_Mutation p.Y134H 0.50 tolerated(0.06) probably_damaging(0.999) TCGA-85-8288-01 11 59554552 59554552 G T STX3 Missense_Mutation p.V53L 0.28 deleterious(0.04) benign(0.083) TCGA-85-8288-01 11 6023397 6023397 G T OR56A4 Missense_Mutation p.P328T 0.26 deleterious(0.04) possibly_damaging(0.848) TCGA-85-8288-01 11 6023398 6023398 G T OR56A4 Silent p.V327V 0.26 TCGA-85-8288-01 11 62010823 62010823 C T SCGB1D2 Missense_Mutation p.P40S 0.21 tolerated(0.85) benign(0.294) TCGA-85-8288-01 11 77885197 77885197 C T KCTD21 Missense_Mutation p.S135N 0.37 tolerated(0.23) possibly_damaging(0.546) TCGA-85-8288-01 11 85397238 85397238 C A CCDC89 5'UTR 0.29 TCGA-85-8288-01 12 100042162 100042162 A T FAM71C Silent p.T70T 0.09 TCGA-85-8288-01 12 100930818 100930818 G T NR1H4 Missense_Mutation p.K318N 0.26 tolerated(0.5) benign(0.003) TCGA-85-8288-01 12 109494536 109494536 C G USP30 Missense_Mutation p.L45V 0.34 tolerated(0.35) benign(0.003) TCGA-85-8288-01 12 111758467 111758467 C A CUX2 Missense_Mutation p.P885H 0.25 deleterious(0) probably_damaging(0.999) TCGA-85-8288-01 12 112605246 112605246 C T HECTD4 Missense_Mutation p.V3991I 0.11 possibly_damaging(0.465) TCGA-85-8288-01 12 113385865 113385865 G T OAS3 Silent p.L330L 0.20 TCGA-85-8288-01 12 121648069 121648069 C A P2RX4 Silent p.A34A 0.22 TCGA-85-8288-01 12 125420004 125420004 G A RPL22P19 RNA 0.27 TCGA-85-8288-01 12 130846054 130846054 G T PIWIL1 Silent p.V626V 0.31 TCGA-85-8288-01 12 14613430 14613430 A G ATF7IP Silent p.V720V 0.35 TCGA-85-8288-01 12 21721820 21721820 G T GYS2 Missense_Mutation p.H268N 0.16 deleterious(0.02) benign(0.004) TCGA-85-8288-01 12 52940098 52940098 G T KRT71 Missense_Mutation p.R433S 0.18 deleterious(0) possibly_damaging(0.86) TCGA-85-8288-01 12 52940099 52940099 A G KRT71 Silent p.Y432Y 0.19 TCGA-85-8288-01 12 6933308 6933308 G A GPR162 Missense_Mutation p.D82N 0.19 tolerated(0.3) benign(0.039) TCGA-85-8288-01 12 71928923 71928923 G A LGR5 Missense_Mutation p.V129I 0.32 tolerated(0.36) possibly_damaging(0.905) TCGA-85-8288-01 12 80658875 80658875 C - OTOGL Frame_Shift_Del p.H695Tfs*126 0.14 TCGA-85-8288-01 12 8088653 8088653 T A SLC2A3 5'UTR 0.24 TCGA-85-8288-01 12 94761692 94761692 A G CCDC41 Silent p.D407D 0.14 TCGA-85-8288-01 13 32785045 32785045 C T FRY Nonsense_Mutation p.Q1489* 0.38 TCGA-85-8288-01 13 37622024 37622024 G C SUPT20H Nonsense_Mutation p.S30* 0.31 TCGA-85-8288-01 14 24551837 24551837 C A NRL Missense_Mutation p.W74L 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-85-8288-01 14 29237575 29237575 G T FOXG1 Missense_Mutation p.V364L 0.39 deleterious(0.02) benign(0.267) TCGA-85-8288-01 14 47566326 47566326 G T MDGA2 Missense_Mutation p.A309E 0.33 deleterious(0.01) probably_damaging(0.953) TCGA-85-8288-01 14 94041508 94041508 A T UNC79 Missense_Mutation p.R548S 0.38 tolerated(0.12) possibly_damaging(0.763) TCGA-85-8288-01 15 101598236 101598236 G A LRRK1 Silent p.P1523P 0.30 TCGA-85-8288-01 15 23889610 23889610 C A MAGEL2 Missense_Mutation p.G491C 0.21 deleterious(0) probably_damaging(0.947) TCGA-85-8288-01 15 25472133 25472133 C G SNORD115-33 5'Flank 0.50 TCGA-85-8288-01 15 44783063 44783063 A G CTDSPL2 Missense_Mutation p.E186G 0.33 deleterious(0.05) possibly_damaging(0.606) TCGA-85-8288-01 15 59348032 59348032 G A RNF111 Missense_Mutation p.V387I 0.35 deleterious(0.03) possibly_damaging(0.686) TCGA-85-8288-01 15 65451021 65451021 T A CLPX Missense_Mutation p.N262Y 0.29 deleterious(0.03) benign(0.163) TCGA-85-8288-01 15 84581906 84581906 A C ADAMTSL3 Missense_Mutation p.E588A 0.27 tolerated(0.7) benign(0.012) TCGA-85-8288-01 15 89392747 89392747 C G ACAN Missense_Mutation p.T604R 0.33 deleterious(0.01) unknown(0) TCGA-85-8288-01 16 2293416 2293416 G C ECI1 Missense_Mutation p.L156V 0.30 deleterious(0) possibly_damaging(0.728) TCGA-85-8288-01 16 23768583 23768583 G A CHP2 Missense_Mutation p.R159H 0.30 deleterious(0) probably_damaging(0.954) TCGA-85-8288-01 16 51174096 51174096 G T SALL1 Silent p.L679L 0.27 TCGA-85-8288-01 16 53296911 53296911 G T CHD9 Missense_Mutation p.A1408S 0.20 probably_damaging(0.999) TCGA-85-8288-01 16 69368581 69368581 T A RP11-343C2.12 Missense_Mutation p.Q65L 0.26 tolerated(0.05) possibly_damaging(0.796) TCGA-85-8288-01 16 707098 707098 C T WDR90 Nonsense_Mutation p.R784* 0.43 TCGA-85-8288-01 16 77328872 77328872 G T ADAMTS18 Missense_Mutation p.A985D 0.07 tolerated(0.12) benign(0.189) TCGA-85-8288-01 16 88873738 88873738 C T CDT1 Missense_Mutation p.P442L 0.17 deleterious(0) probably_damaging(0.974) TCGA-85-8288-01 16 89599020 89599020 A T SPG7 Missense_Mutation p.N434Y 0.30 deleterious(0) probably_damaging(1) TCGA-85-8288-01 16 90095612 90095612 G A C16orf3 Missense_Mutation p.P47S 0.20 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-85-8288-01 17 21319092 21319092 C T KCNJ12 Silent p.Y146Y 0.12 TCGA-85-8288-01 17 26370286 26370286 G T NLK Silent p.S129S 0.24 TCGA-85-8288-01 17 39914709 39914709 C T JUP Missense_Mutation p.R572Q 0.26 deleterious(0.01) possibly_damaging(0.841) TCGA-85-8288-01 17 42854118 42854118 G T ADAM11 Silent p.P524P 0.30 TCGA-85-8288-01 17 42956955 42956955 C T EFTUD2 Missense_Mutation p.G224E 0.17 deleterious(0) probably_damaging(0.994) TCGA-85-8288-01 17 42956957 42956957 A T EFTUD2 Missense_Mutation p.D223E 0.16 deleterious(0.03) probably_damaging(1) TCGA-85-8288-01 17 46622002 46622002 G - HOXB2 Frame_Shift_Del p.P91Rfs*8 0.38 TCGA-85-8288-01 17 47123284 47123284 G A IGF2BP1 Silent p.E476E 0.17 TCGA-85-8288-01 17 48703700 48703700 G C CACNA1G Missense_Mutation p.R2241P 0.43 deleterious(0.02) possibly_damaging(0.644) TCGA-85-8288-01 17 51901966 51901966 G A KIF2B Missense_Mutation p.M524I 0.20 tolerated(0.22) benign(0.226) TCGA-85-8288-01 17 5442791 5442791 G A NLRP1 Silent p.G938G 0.46 TCGA-85-8288-01 17 62223788 62223788 G T TEX2 3'Flank 0.28 TCGA-85-8288-01 17 7579330 7579330 G - TP53 Frame_Shift_Del p.K120Sfs*3 0.27 TCGA-85-8288-01 18 11851933 11851933 G T CHMP1B Silent p.T141T 0.25 TCGA-85-8288-01 18 13885322 13885322 A T MC2R Missense_Mutation p.L66M 0.29 deleterious(0) probably_damaging(1) TCGA-85-8288-01 18 19153774 19153775 - T ESCO1 Frame_Shift_Ins p.T344Nfs*4 0.20 TCGA-85-8288-01 18 28710525 28710525 G T DSC1 Missense_Mutation p.H879Q 0.27 tolerated(0.5) benign(0.058) TCGA-85-8288-01 18 32455347 32455347 G T DTNA Nonsense_Mutation p.E543* 0.26 TCGA-85-8288-01 18 43253662 43253662 A G SLC14A2 Missense_Mutation p.T798A 0.32 tolerated(0.98) benign(0.309) TCGA-85-8288-01 18 6837315 6837315 G A ARHGAP28 5'UTR 0.37 TCGA-85-8288-01 18 74091310 74091310 C T ZNF516 Silent p.P920P 0.17 TCGA-85-8288-01 18 76754665 76754665 G A SALL3 Missense_Mutation p.G892S 0.08 deleterious(0.03) possibly_damaging(0.685) TCGA-85-8288-01 19 11834029 11834029 A - ZNF823 Frame_Shift_Del p.V107Afs*130 0.22 TCGA-85-8288-01 19 12444370 12444370 G C ZNF563 5'UTR 0.26 TCGA-85-8288-01 19 12924010 12924010 G A RNASEH2A Missense_Mutation p.D251N 0.33 tolerated(0.54) benign(0) TCGA-85-8288-01 19 1418665 1418665 A T DAZAP1 Missense_Mutation p.I80F 0.29 deleterious(0) unknown(0) TCGA-85-8288-01 19 1433738 1433738 G T DAZAP1 Intron 0.33 TCGA-85-8288-01 19 20228786 20228786 G A ZNF90 Silent p.Q141Q 0.12 TCGA-85-8288-01 19 21909704 21909704 T C ZNF100 Silent p.S470S 0.21 TCGA-85-8288-01 19 2291468 2291468 C T LINGO3 Missense_Mutation p.R103H 0.28 tolerated(0.23) benign(0.003) TCGA-85-8288-01 19 36124752 36124752 G A RBM42 Missense_Mutation p.S283N 0.20 deleterious(0) unknown(0) TCGA-85-8288-01 19 38126372 38126372 T C ZFP30 Missense_Mutation p.K357R 0.19 tolerated(0.05) probably_damaging(0.998) TCGA-85-8288-01 19 38684410 38684410 C T SIPA1L3 Silent p.P1610P 0.33 TCGA-85-8288-01 19 38976598 38976598 C T RYR1 Missense_Mutation p.T1768I 0.20 possibly_damaging(0.858) TCGA-85-8288-01 19 49657141 49657141 G T HRC Missense_Mutation p.H452N 0.29 deleterious(0.02) possibly_damaging(0.549) TCGA-85-8288-01 19 5456201 5456201 C A ZNRF4 Missense_Mutation p.H233Q 0.24 tolerated(0.21) benign(0.16) TCGA-85-8288-01 19 54822958 54822958 G T LILRA5 Silent p.A146A 0.26 TCGA-85-8288-01 19 55220415 55220415 G T AC098784.2 3'Flank 0.21 TCGA-85-8288-01 19 55530019 55530019 C - GP6 Splice_Site p.X242_splice 0.19 TCGA-85-8288-01 19 56539531 56539531 C A NLRP5 Missense_Mutation p.D644E 0.25 tolerated(1) benign(0.008) TCGA-85-8288-01 19 57335794 57335794 G T PEG3 Missense_Mutation p.P77Q 0.23 deleterious(0) probably_damaging(0.995) TCGA-85-8288-01 19 58058312 58058312 T C ZNF550 3'UTR 0.39 TCGA-85-8288-01 19 58095785 58095785 C T ZIK1 Intron 0.18 TCGA-85-8288-01 19 58420461 58420461 G C ZNF417 Silent p.L395L 0.06 TCGA-85-8288-01 19 58420462 58420462 A C ZNF417 Missense_Mutation p.L395R 0.07 deleterious(0) probably_damaging(0.999) TCGA-85-8288-01 19 58723944 58723944 T C ZNF274 Missense_Mutation p.V465A 0.34 tolerated(0.2) benign(0.011) TCGA-85-8288-01 19 757200 757200 A G MISP Missense_Mutation p.E85G 0.20 deleterious(0.02) possibly_damaging(0.859) TCGA-85-8288-01 19 8654193 8654193 C A ADAMTS10 Silent p.V697V 0.23 TCGA-85-8288-01 19 9407268 9407268 T C ZNF699 Missense_Mutation p.K271R 0.16 tolerated(1) probably_damaging(0.996) TCGA-85-8288-01 1 109439616 109439616 G A GPSM2 Missense_Mutation p.A63T 0.22 deleterious(0) probably_damaging(1) TCGA-85-8288-01 1 118492739 118492739 G A WDR3 Missense_Mutation p.V578I 0.32 tolerated(0.39) benign(0.005) TCGA-85-8288-01 1 145302774 145302774 G A NBPF10 Silent p.P404P 0.22 TCGA-85-8288-01 1 151341522 151341522 C A SELENBP1 Silent p.V106V 0.27 TCGA-85-8288-01 1 153800521 153800521 A G GATAD2B Silent p.N101N 0.21 TCGA-85-8288-01 1 155291061 155291061 C G RUSC1 Intron 0.17 TCGA-85-8288-01 1 156846275 156846275 C T NTRK1 Silent p.I572I 0.42 TCGA-85-8288-01 1 157514180 157514180 C G FCRL5 Missense_Mutation p.W239S 0.30 tolerated(0.75) benign(0.192) TCGA-85-8288-01 1 158300793 158300793 A G CD1B Missense_Mutation p.W41R 0.28 deleterious(0.04) benign(0.381) TCGA-85-8288-01 1 169985736 169985736 C A KIFAP3 Silent p.V350V 0.25 TCGA-85-8288-01 1 17331249 17331249 C A ATP13A2 Nonsense_Mutation p.E139* 0.30 TCGA-85-8288-01 1 179523675 179523675 A T AXDND1 3'UTR 0.33 TCGA-85-8288-01 1 186072731 186072731 G A HMCN1 Silent p.R3567R 0.27 TCGA-85-8288-01 1 196963298 196963298 C G CFHR5 Missense_Mutation p.F173L 0.24 tolerated(0.06) possibly_damaging(0.629) TCGA-85-8288-01 1 204419070 204419070 G A PIK3C2B Silent p.I714I 0.26 TCGA-85-8288-01 1 207085136 207085136 C T FAIM3 Missense_Mutation p.E217K 0.22 tolerated(0.13) benign(0.007) TCGA-85-8288-01 1 209849333 209849333 G A G0S2 Missense_Mutation p.A102T 0.37 deleterious(0) probably_damaging(0.998) TCGA-85-8288-01 1 215408381 215408381 G T KCNK2 Nonsense_Mutation p.E392* 0.24 TCGA-85-8288-01 1 225152219 225152219 C G DNAH14 Missense_Mutation p.L136V 0.13 deleterious(0) probably_damaging(1) TCGA-85-8288-01 1 226036651 226036651 G C TMEM63A Missense_Mutation p.L712V 0.09 tolerated(0.17) benign(0.005) TCGA-85-8288-01 1 229568366 229568366 C T ACTA1 Missense_Mutation p.V131M 0.12 deleterious_low_confidence(0.02) probably_damaging(0.965) TCGA-85-8288-01 1 241669340 241669340 A G FH Silent p.F289F 0.25 TCGA-85-8288-01 1 243332997 243332997 G C CEP170 Silent p.A592A 0.19 TCGA-85-8288-01 1 247769332 247769332 T A OR2G3 Missense_Mutation p.W149R 0.28 deleterious(0) probably_damaging(1) TCGA-85-8288-01 1 29139017 29139017 G C OPRD1 Missense_Mutation p.R41P 0.47 tolerated(0.26) possibly_damaging(0.859) TCGA-85-8288-01 1 32207724 32207724 C T BAI2 Silent p.A449A 0.27 TCGA-85-8288-01 1 32502597 32502597 G T KHDRBS1 Silent p.V286V 0.33 TCGA-85-8288-01 1 32829561 32829561 G A TSSK3 Missense_Mutation p.G171S 0.33 deleterious(0) probably_damaging(0.999) TCGA-85-8288-01 1 40535426 40535426 T C CAP1 Silent p.G291G 0.10 TCGA-85-8288-01 1 47767328 47767328 C A STIL Missense_Mutation p.G120W 0.40 deleterious(0) probably_damaging(1) TCGA-85-8288-01 1 75097407 75097407 A G C1orf173 Missense_Mutation p.L270P 0.18 deleterious(0) probably_damaging(0.958) TCGA-85-8288-01 1 82431836 82431836 C T LPHN2 Silent p.S687S 0.23 TCGA-85-8288-01 1 89889947 89889947 G A GBP1P1 RNA 0.30 TCGA-85-8288-01 1 90179535 90179535 T A LRRC8C Missense_Mutation p.L469H 0.04 deleterious(0) probably_damaging(0.998) TCGA-85-8288-01 1 90180436 90180436 T A LRRC8C Silent p.P769P 0.25 TCGA-85-8288-01 1 9073648 9073648 G A SLC2A7 Missense_Mutation p.A317V 0.28 tolerated(0.28) benign(0.214) TCGA-85-8288-01 1 9099966 9099966 C A SLC2A5 Missense_Mutation p.A260S 0.24 tolerated(0.69) possibly_damaging(0.545) TCGA-85-8288-01 20 10622226 10622226 A C JAG1 Missense_Mutation p.V933G 0.29 tolerated(0.06) benign(0.101) TCGA-85-8288-01 20 19665973 19665973 A G SLC24A3 Missense_Mutation p.D431G 0.08 tolerated(0.29) benign(0.001) TCGA-85-8288-01 20 31375071 31375071 G T DNMT3B Silent p.T156T 0.32 TCGA-85-8288-01 20 31688300 31688300 G T BPIFB4 Splice_Site p.X546_splice 0.18 TCGA-85-8288-01 20 54824074 54824074 G A MC3R Missense_Mutation p.V59I 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-85-8288-01 20 8721068 8721068 A G PLCB1 Missense_Mutation p.K796E 0.06 deleterious(0.01) benign(0.315) TCGA-85-8288-01 21 17138415 17138415 C G USP25 Missense_Mutation p.P75A 0.23 tolerated(0.23) possibly_damaging(0.539) TCGA-85-8288-01 21 38092165 38092165 C A SIM2 Missense_Mutation p.S131Y 0.28 tolerated(0.08) benign(0.444) TCGA-85-8288-01 21 41033343 41033343 T A B3GALT5 Missense_Mutation p.F286Y 0.32 tolerated(1) benign(0.005) TCGA-85-8288-01 21 47776923 47776924 - G PCNT Frame_Shift_Ins p.D659Gfs*18 0.22 TCGA-85-8288-01 22 20097689 20097689 C T DGCR8 3'UTR 0.27 TCGA-85-8288-01 22 23077561 23077561 C G IGLV2-18 Missense_Mutation p.T113R 0.29 tolerated_low_confidence(0.55) benign(0.001) TCGA-85-8288-01 22 31286717 31286717 G A OSBP2 Silent p.V542V 0.35 TCGA-85-8288-01 22 36695062 36695062 T A MYH9 Silent p.I1001I 0.29 TCGA-85-8288-01 2 108622566 108622566 C T SLC5A7 Missense_Mutation p.T268I 0.47 tolerated(0.19) benign(0.094) TCGA-85-8288-01 2 141777577 141777577 C G LRP1B Missense_Mutation p.R628S 0.39 possibly_damaging(0.537) TCGA-85-8288-01 2 155555369 155555369 G T KCNJ3 Missense_Mutation p.G28W 0.36 deleterious(0.01) probably_damaging(0.965) TCGA-85-8288-01 2 16742775 16742775 G T FAM49A Missense_Mutation p.D154E 0.22 deleterious(0) probably_damaging(0.997) TCGA-85-8288-01 2 179428597 179428597 G A TTN Missense_Mutation p.S27421L 0.44 TCGA-85-8288-01 2 179574499 179574500 CG A TTN Frame_Shift_Del p.R9516Lfs*8 0.32 TCGA-85-8288-01 2 198570840 198570840 A C MARS2 Silent p.P237P 0.40 TCGA-85-8288-01 2 201474061 201474061 C T AOX1 Silent p.I359I 0.24 TCGA-85-8288-01 2 202136237 202136237 A G CASP8 Splice_Site p.X161_splice 0.43 TCGA-85-8288-01 2 20518303 20518303 G A PUM2 Missense_Mutation p.A52V 0.25 deleterious(0.01) benign(0.128) TCGA-85-8288-01 2 217542876 217542876 G A IGFBP5 Silent p.L216L 0.05 TCGA-85-8288-01 2 220111921 220111921 G A STK16 Silent p.G131G 0.50 TCGA-85-8288-01 2 231380434 231380434 A C SP100 Intron 0.30 TCGA-85-8288-01 2 31178579 31178579 C T GALNT14 Missense_Mutation p.A192T 0.25 deleterious(0.02) benign(0.365) TCGA-85-8288-01 2 64779577 64779577 T C AFTPH Silent p.D323D 0.28 TCGA-85-8288-01 2 70315376 70315376 G T PCBP1 Silent p.L167L 0.29 TCGA-85-8288-01 2 71188750 71188750 T G ATP6V1B1 Missense_Mutation p.F238V 0.30 deleterious(0) probably_damaging(0.996) TCGA-85-8288-01 2 74362584 74362584 A T BOLA3 3'UTR 0.31 TCGA-85-8288-01 2 79386509 79386509 G A REG3A Missense_Mutation p.P8L 0.21 tolerated(0.12) benign(0.115) TCGA-85-8288-01 2 89265962 89265962 C A IGKV1-6 Missense_Mutation p.W57L 0.39 deleterious(0.01) possibly_damaging(0.852) TCGA-85-8288-01 3 111603829 111603829 T G PHLDB2 Missense_Mutation p.L302R 0.10 tolerated(0.18) benign(0.254) TCGA-85-8288-01 3 113775283 113775283 A G KIAA1407 Missense_Mutation p.S11P 0.45 tolerated(0.14) benign(0.035) TCGA-85-8288-01 3 118621497 118621497 T C IGSF11 Missense_Mutation p.N389S 0.46 deleterious(0.01) probably_damaging(0.996) TCGA-85-8288-01 3 127294823 127294823 C - TPRA1 Frame_Shift_Del p.G190Afs*27 0.18 TCGA-85-8288-01 3 129817139 129817139 G T AC083906.2 3'Flank 0.20 TCGA-85-8288-01 3 151176380 151176380 C A IGSF10 Nonsense_Mutation p.E40* 0.41 TCGA-85-8288-01 3 164780228 164780228 G A SI Silent p.T317T 0.23 TCGA-85-8288-01 3 167543099 167543099 C G SERPINI1 Missense_Mutation p.F407L 0.24 tolerated(1) benign(0.174) TCGA-85-8288-01 3 170078524 170078524 C G SKIL Silent p.L135L 0.20 TCGA-85-8288-01 3 187449709 187449709 G A BCL6 Silent p.F57F 0.45 TCGA-85-8288-01 3 194081440 194081440 G A LRRC15 Silent p.N117N 0.29 TCGA-85-8288-01 3 195497226 195497226 T C MUC4 Missense_Mutation p.Y4420C 0.23 possibly_damaging(0.612) TCGA-85-8288-01 3 27453131 27453131 A G SLC4A7 Splice_Site p.X580_splice 0.43 TCGA-85-8288-01 3 42672733 42672733 G T NKTR Missense_Mutation p.D159Y 0.30 deleterious_low_confidence(0) unknown(0) TCGA-85-8288-01 3 47951212 47951212 C A MAP4 Intron 0.41 TCGA-85-8288-01 3 49136563 49136563 T A QARS Missense_Mutation p.T580S 0.39 tolerated(0.19) benign(0.26) TCGA-85-8288-01 3 50223480 50223480 G C SEMA3F Splice_Site p.X582_splice 0.38 TCGA-85-8288-01 3 56468379 56468379 C G ERC2 Missense_Mutation p.Q219H 0.58 deleterious(0) probably_damaging(1) TCGA-85-8288-01 3 65342679 65342679 G A MAGI1 Missense_Mutation p.P1255S 0.38 tolerated(0.41) benign(0.003) TCGA-85-8288-01 3 69105034 69105034 C A UBA3 Missense_Mutation p.R424L 0.36 tolerated(0.49) benign(0.005) TCGA-85-8288-01 3 99513430 99513430 G A COL8A1 Missense_Mutation p.G229R 0.16 deleterious(0) unknown(0) TCGA-85-8288-01 4 10446908 10446908 C G ZNF518B Missense_Mutation p.D349H 0.42 deleterious(0) probably_damaging(0.998) TCGA-85-8288-01 4 113436038 113436038 G T NEUROG2 Missense_Mutation p.S198R 0.31 tolerated(0.13) benign(0.019) TCGA-85-8288-01 4 121958330 121958330 G T NDNF Missense_Mutation p.R266S 0.34 tolerated(0.9) benign(0.019) TCGA-85-8288-01 4 162307240 162307240 T C FSTL5 Missense_Mutation p.T735A 0.30 tolerated(0.09) possibly_damaging(0.829) TCGA-85-8288-01 4 184190276 184190276 A G WWC2 Missense_Mutation p.D787G 0.37 tolerated(0.07) probably_damaging(0.947) TCGA-85-8288-01 4 185940973 185940973 G A HELT Missense_Mutation p.D154N 0.07 tolerated(0.09) possibly_damaging(0.766) TCGA-85-8288-01 4 3446688 3446688 C T HGFAC Silent p.A328A 0.54 TCGA-85-8288-01 4 40946911 40946911 C T APBB2 Missense_Mutation p.V339I 0.22 tolerated(0.37) benign(0.003) TCGA-85-8288-01 4 87684285 87684285 A T PTPN13 Missense_Mutation p.D1320V 0.26 deleterious(0) probably_damaging(0.987) TCGA-85-8288-01 5 101755620 101755620 G T SLCO6A1 Missense_Mutation p.T461K 0.47 deleterious(0) probably_damaging(0.991) TCGA-85-8288-01 5 113831653 113831653 A T KCNN2 Missense_Mutation p.K505M 0.54 deleterious(0.02) probably_damaging(0.99) TCGA-85-8288-01 5 115335523 115335523 G C AQPEP Missense_Mutation p.R480T 0.59 deleterious(0.01) probably_damaging(0.988) TCGA-85-8288-01 5 138163245 138163245 C T CTNNA1 Silent p.R300R 0.12 TCGA-85-8288-01 5 140573692 140573692 G T PCDHB10 Missense_Mutation p.A523S 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.63) TCGA-85-8288-01 5 140604260 140604260 C A PCDHB14 Missense_Mutation p.P395T 0.04 deleterious_low_confidence(0.01) probably_damaging(0.961) TCGA-85-8288-01 5 14368921 14368921 G A TRIO Silent p.A993A 0.25 TCGA-85-8288-01 5 175110948 175110948 G T HRH2 Missense_Mutation p.A238S 0.37 tolerated(0.05) probably_damaging(0.914) TCGA-85-8288-01 5 176520503 176520503 G A FGFR4 Missense_Mutation p.V450M 0.40 tolerated(0.11) benign(0.029) TCGA-85-8288-01 5 23509197 23509197 G A PRDM9 Missense_Mutation p.E19K 0.41 tolerated_low_confidence(0.16) unknown(0) TCGA-85-8288-01 5 314542 314545 ATAT - PDCD6 Frame_Shift_Del p.I164Sfs*33 0.31 TCGA-85-8288-01 5 32242217 32242218 - T MTMR12 Frame_Shift_Ins p.A373Sfs*99 0.32 TCGA-85-8288-01 5 33938218 33938218 G A RXFP3 Missense_Mutation p.G458E 0.20 deleterious_low_confidence(0.01) benign(0.125) TCGA-85-8288-01 5 35776376 35776376 C T SPEF2 Nonsense_Mutation p.R1366* 0.12 TCGA-85-8288-01 5 35861041 35861041 G A IL7R Missense_Mutation p.C57Y 0.46 deleterious(0) probably_damaging(1) TCGA-85-8288-01 5 38523597 38523597 G T LIFR Nonsense_Mutation p.S162* 0.06 TCGA-85-8288-01 5 38952438 38952438 C A RICTOR Missense_Mutation p.S996I 0.24 deleterious(0.01) possibly_damaging(0.754) TCGA-85-8288-01 5 5222947 5222947 G T ADAMTS16 Nonsense_Mutation p.E551* 0.39 TCGA-85-8288-01 5 88027713 88027713 C A MEF2C Missense_Mutation p.G233W 0.35 deleterious(0) probably_damaging(0.999) TCGA-85-8288-01 6 105730434 105730434 T C PREP Missense_Mutation p.N525D 0.28 deleterious(0) probably_damaging(0.997) TCGA-85-8288-01 6 123892120 123892120 C T TRDN Nonsense_Mutation p.W60* 0.26 TCGA-85-8288-01 6 132022416 132022416 C T OR2A4 Silent p.G42G 0.16 TCGA-85-8288-01 6 17856315 17856315 G T KIF13A Missense_Mutation p.L87I 0.46 deleterious(0) probably_damaging(0.999) TCGA-85-8288-01 6 26459781 26459781 A G BTN2A1 Missense_Mutation p.H52R 0.34 tolerated(0.14) benign(0.236) TCGA-85-8288-01 6 38850823 38850823 C A DNAH8 Missense_Mutation p.H2449N 0.33 benign(0.001) TCGA-85-8288-01 6 83921703 83921703 T A ME1 Silent p.L553L 0.06 TCGA-85-8288-01 6 96651375 96651375 G T FUT9 Missense_Mutation p.W115L 0.34 tolerated(0.34) benign(0.036) TCGA-85-8288-01 6 99323547 99323547 C A FBXL4 Silent p.R482R 0.25 TCGA-85-8288-01 7 100205338 100205338 A G PCOLCE Missense_Mutation p.Y364C 0.32 deleterious(0) probably_damaging(1) TCGA-85-8288-01 7 100676688 100676688 C A MUC17 Missense_Mutation p.T664N 0.29 probably_damaging(0.913) TCGA-85-8288-01 7 1015174 1015174 T C COX19 5'UTR 0.29 TCGA-85-8288-01 7 101559463 101559463 G A CUX1 Silent p.R44R 0.28 TCGA-85-8288-01 7 121694006 121694007 - T PTPRZ1 Frame_Shift_Ins p.L2100Pfs*15 0.21 TCGA-85-8288-01 7 136849076 136849090 AGGTGCCCAAACTGA - hsa-mir-490 Intron 0.26 TCGA-85-8288-01 7 142479966 142479966 A T PRSS3P2 RNA 0.03 TCGA-85-8288-01 7 150439575 150439575 G A GIMAP5 Silent p.L116L 0.31 TCGA-85-8288-01 7 150774737 150774737 G A FASTK Silent p.L390L 0.31 TCGA-85-8288-01 7 151877830 151877830 T A KMT2C Missense_Mutation p.N2372I 0.34 probably_damaging(0.939) TCGA-85-8288-01 7 2262341 2262341 G A MAD1L1 Nonsense_Mutation p.Q114* 0.05 TCGA-85-8288-01 7 24708201 24708201 G T MPP6 Missense_Mutation p.A346S 0.44 deleterious(0.05) possibly_damaging(0.817) TCGA-85-8288-01 7 25198138 25198138 G A C7orf31 Missense_Mutation p.P132L 0.29 deleterious(0) probably_damaging(0.999) TCGA-85-8288-01 7 31378334 31378334 G T NEUROD6 Silent p.L183L 0.29 TCGA-85-8288-01 7 31378784 31378784 C G NEUROD6 Missense_Mutation p.K33N 0.27 tolerated(0.23) benign(0) TCGA-85-8288-01 7 44555510 44555510 C T NPC1L1 Missense_Mutation p.A1257T 0.25 deleterious(0) probably_damaging(0.999) TCGA-85-8288-01 7 53103983 53103983 A T POM121L12 Missense_Mutation p.R207W 0.27 deleterious(0) probably_damaging(0.938) TCGA-85-8288-01 7 5541563 5541563 C A FBXL18 Nonsense_Mutation p.E113* 0.18 TCGA-85-8288-01 7 57187542 57187542 C A ZNF479 3'UTR 0.23 TCGA-85-8288-01 7 6431650 6431650 G A RAC1 Missense_Mutation p.R68H 0.33 deleterious(0.01) possibly_damaging(0.785) TCGA-85-8288-01 7 72040530 72040530 T A TYW1B Missense_Mutation p.T280S 0.33 tolerated(0.2) benign(0.196) TCGA-85-8288-01 7 76134759 76134759 G A DTX2 Silent p.T570T 0.27 TCGA-85-8288-01 7 87082270 87082270 G T ABCB4 Silent p.R176R 0.20 TCGA-85-8288-01 7 88962695 88962695 A C ZNF804B Silent p.P133P 0.30 TCGA-85-8288-01 7 94937411 94937411 A G PON1 Missense_Mutation p.Y204H 0.29 tolerated(0.14) possibly_damaging(0.882) TCGA-85-8288-01 8 10466792 10466792 G A RP1L1 Missense_Mutation p.R1606C 0.38 unknown(0) TCGA-85-8288-01 8 106815624 106815624 C A ZFPM2 Missense_Mutation p.A1105E 0.24 tolerated(0.21) benign(0.047) TCGA-85-8288-01 8 113564889 113564889 G T CSMD3 Missense_Mutation p.P1432H 0.12 deleterious(0) probably_damaging(0.999) TCGA-85-8288-01 8 126030330 126030330 A G SQLE Missense_Mutation p.M412V 0.27 tolerated(0.18) benign(0.012) TCGA-85-8288-01 8 12947765 12947765 T C DLC1 Missense_Mutation p.K1357R 0.22 tolerated(0.16) possibly_damaging(0.559) TCGA-85-8288-01 8 144102810 144102810 G A LY6E Silent p.Q44Q 0.21 TCGA-85-8288-01 8 28574968 28574968 G T EXTL3 Silent p.L464L 0.04 TCGA-85-8288-01 8 363145 363145 G C FBXO25 Missense_Mutation p.W22C 0.20 deleterious(0) probably_damaging(1) TCGA-85-8288-01 8 36780088 36780088 A T KCNU1 Missense_Mutation p.T893S 0.31 tolerated(0.11) possibly_damaging(0.808) TCGA-85-8288-01 8 42611524 42611524 G A CHRNA6 Missense_Mutation p.T273M 0.33 deleterious(0.01) possibly_damaging(0.508) TCGA-85-8288-01 8 62460739 62460739 T C ASPH Missense_Mutation p.K552R 0.31 tolerated(0.12) benign(0.018) TCGA-85-8288-01 8 95942734 95942734 C A TP53INP1 Missense_Mutation p.Q232H 0.36 deleterious(0) benign(0.105) TCGA-85-8288-01 9 101216455 101216455 G A GABBR2 Silent p.G348G 0.44 TCGA-85-8288-01 9 135698652 135698652 C A AK8 Missense_Mutation p.V277L 0.39 tolerated(0.3) benign(0.015) TCGA-85-8288-01 9 19378797 19378797 T C RPS6 Silent p.P86P 0.09 TCGA-85-8288-01 9 36249287 36249287 A G GNE Silent p.Y53Y 0.29 TCGA-85-8288-01 9 79318456 79318456 G A PRUNE2 Silent p.A2691A 0.51 TCGA-85-8288-01 X 101909403 101909403 C A GPRASP1 Missense_Mutation p.P188T 0.44 tolerated(0.18) benign(0.009) TCGA-85-8288-01 X 102192230 102192230 G T RAB40AL 5'UTR 0.53 TCGA-85-8288-01 X 135292259 135292259 A T FHL1 3'UTR 0.54 TCGA-85-8288-01 X 135579871 135579871 G T HTATSF1 Missense_Mutation p.D10Y 0.52 deleterious(0) possibly_damaging(0.626) TCGA-85-8288-01 X 153130630 153130630 G T L1CAM Missense_Mutation p.Q929K 0.77 tolerated(0.09) possibly_damaging(0.74) TCGA-85-8288-01 X 2873557 2873557 A C ARSE Silent p.L69L 0.52 TCGA-85-8288-01 X 37028043 37028043 C G FAM47C Silent p.S520S 0.62 TCGA-85-8288-01 X 71840621 71840621 G A PHKA1 Silent p.C697C 0.60 TCGA-85-8288-01 X 79279583 79279583 G A TBX22 Silent p.R126R 0.59 TCGA-85-8288-01 X 82763956 82763956 G T POU3F4 Missense_Mutation p.L208F 0.46 deleterious(0) probably_damaging(1) TCGA-85-8350-01 10 101578626 101578626 T G ABCC2 Missense_Mutation p.L784R 0.25 deleterious(0) probably_damaging(0.989) TCGA-85-8350-01 10 113920438 113920438 T A GPAM Silent p.T561T 0.19 TCGA-85-8350-01 10 116417731 116417731 T G ABLIM1 Missense_Mutation p.S77R 0.23 tolerated_low_confidence(0.55) benign(0.002) TCGA-85-8350-01 10 129905708 129905708 C T MKI67 Missense_Mutation p.D1466N 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-85-8350-01 10 27536972 27536972 G T RP11-85G18.6 Intron 0.33 TCGA-85-8350-01 10 38407622 38407622 A G ZNF37A Missense_Mutation p.R515G 0.30 deleterious(0) probably_damaging(0.997) TCGA-85-8350-01 10 43089227 43089227 C A ZNF33B Missense_Mutation p.G391W 0.23 deleterious(0) probably_damaging(0.928) TCGA-85-8350-01 10 71913695 71913695 C T SAR1A Missense_Mutation p.V127M 0.19 deleterious(0.04) benign(0.337) TCGA-85-8350-01 10 73767451 73767451 G A CHST3 Missense_Mutation p.R221H 0.16 deleterious(0) probably_damaging(1) TCGA-85-8350-01 10 75034197 75034197 C G TTC18 Missense_Mutation p.E1013D 0.23 tolerated(0.08) probably_damaging(0.987) TCGA-85-8350-01 10 75034344 75034344 A G TTC18 Silent p.N964N 0.15 TCGA-85-8350-01 10 81070905 81070905 G A ZMIZ1 Silent p.A1020A 0.05 TCGA-85-8350-01 10 85984610 85984610 C A LRIT2 Missense_Mutation p.R124L 0.18 deleterious(0.02) possibly_damaging(0.548) TCGA-85-8350-01 10 95372372 95372372 A T PDE6C 5'UTR 0.30 TCGA-85-8350-01 11 102056857 102056857 G T YAP1 Missense_Mutation p.R266L 0.33 tolerated(0.12) benign(0.326) TCGA-85-8350-01 11 109294958 109294958 C G C11orf87 3'UTR 0.24 TCGA-85-8350-01 11 120989183 120989183 G C TECTA Missense_Mutation p.S320T 0.26 deleterious(0.04) benign(0.131) TCGA-85-8350-01 11 1253910 1253910 G A MUC5B Missense_Mutation p.E659K 0.14 unknown(0) TCGA-85-8350-01 11 129800956 129800956 C T PRDM10 Silent p.Q495Q 0.21 TCGA-85-8350-01 11 14990224 14990224 T A CALCA 3'UTR 0.20 TCGA-85-8350-01 11 35226100 35226100 C G CD44 Missense_Mutation p.Q399E 0.32 deleterious(0.04) benign(0.019) TCGA-85-8350-01 11 43283781 43283781 G T HNRNPKP3 RNA 0.25 TCGA-85-8350-01 11 4389363 4389363 G C OR52B4 Missense_Mutation p.R55G 0.07 deleterious(0.02) benign(0.004) TCGA-85-8350-01 11 45671349 45671349 G T CHST1 Silent p.A375A 0.07 TCGA-85-8350-01 11 4661891 4661891 A T OR51D1 Missense_Mutation p.T291S 0.13 deleterious(0) benign(0.175) TCGA-85-8350-01 11 49973980 49973980 G T OR4C13 Silent p.A2A 0.23 TCGA-85-8350-01 11 55065335 55065335 C A TRIM51HP RNA 0.12 TCGA-85-8350-01 11 555050 555050 G T C11orf35 Missense_Mutation p.A612E 0.24 deleterious(0) probably_damaging(0.998) TCGA-85-8350-01 11 56258437 56258437 T A OR5M8 Missense_Mutation p.K137M 0.11 deleterious(0.01) possibly_damaging(0.572) TCGA-85-8350-01 11 5758300 5758300 A C OR56B1 Missense_Mutation p.H185P 0.22 deleterious(0) probably_damaging(0.996) TCGA-85-8350-01 11 59271858 59271858 C A OR4D11 Silent p.A270A 0.11 TCGA-85-8350-01 11 60230005 60230005 G T MS4A1 Missense_Mutation p.G53V 0.14 deleterious(0) probably_damaging(1) TCGA-85-8350-01 11 60559776 60559776 C A MS4A10 Silent p.T114T 0.25 TCGA-85-8350-01 11 64898218 64898218 G A SYVN1 Missense_Mutation p.A340V 0.05 tolerated(0.35) unknown(0) TCGA-85-8350-01 11 66191379 66191379 C A NPAS4 Missense_Mutation p.P340T 0.11 tolerated(0.81) benign(0.003) TCGA-85-8350-01 11 66469079 66469079 T C SPTBN2 Missense_Mutation p.N931S 0.11 tolerated(0.82) benign(0) TCGA-85-8350-01 11 68527790 68527790 C A CPT1A Missense_Mutation p.W682L 0.26 deleterious(0) probably_damaging(0.995) TCGA-85-8350-01 11 70333387 70333387 G T SHANK2 Missense_Mutation p.A1005D 0.04 deleterious(0.02) benign(0.175) TCGA-85-8350-01 11 74168393 74168393 C G KCNE3 Silent p.V72V 0.35 TCGA-85-8350-01 12 101011540 101011540 G T GAS2L3 Missense_Mutation p.R155I 0.23 deleterious(0) probably_damaging(0.998) TCGA-85-8350-01 12 104123897 104123897 A T STAB2 Missense_Mutation p.T1696S 0.29 tolerated(1) benign(0.051) TCGA-85-8350-01 12 109016917 109016917 G T SELPLG Missense_Mutation p.S405R 0.38 tolerated(0.11) benign(0.188) TCGA-85-8350-01 12 109690963 109690963 G T ACACB Missense_Mutation p.K2015N 0.27 tolerated(0.05) probably_damaging(0.998) TCGA-85-8350-01 12 124175174 124175174 A T TCTN2 Missense_Mutation p.E329V 0.47 deleterious(0.03) possibly_damaging(0.67) TCGA-85-8350-01 12 124831127 124831127 C A NCOR2 Nonsense_Mutation p.E1448* 0.27 TCGA-85-8350-01 12 2558202 2558202 G A CACNA1C Missense_Mutation p.A180T 0.15 deleterious(0.02) probably_damaging(0.958) TCGA-85-8350-01 12 50186464 50186464 C G NCKAP5L Missense_Mutation p.D1216H 0.13 tolerated(0.09) benign(0.014) TCGA-85-8350-01 12 53011924 53011924 G C KRT73 Missense_Mutation p.R129G 0.24 deleterious(0) possibly_damaging(0.571) TCGA-85-8350-01 12 54894364 54894364 C A NCKAP1L Missense_Mutation p.F87L 0.32 tolerated(0.41) benign(0) TCGA-85-8350-01 12 55642000 55642000 C A OR6C74 Nonsense_Mutation p.S310* 0.14 TCGA-85-8350-01 12 55759626 55759626 A T OR6C75 Silent p.I244I 0.25 TCGA-85-8350-01 12 57397917 57397917 G A ZBTB39 Missense_Mutation p.T262I 0.36 tolerated(0.39) benign(0.02) TCGA-85-8350-01 12 57569479 57569479 C T LRP1 Missense_Mutation p.R1262C 0.36 possibly_damaging(0.719) TCGA-85-8350-01 12 7047803 7047803 C T ATN1 Missense_Mutation p.H893Y 0.34 probably_damaging(0.968) TCGA-85-8350-01 12 7053874 7053874 G C C12orf57 Intron 0.24 TCGA-85-8350-01 12 80732989 80732989 A C OTOGL Silent p.I1656I 0.26 TCGA-85-8350-01 12 99640640 99640640 C A ANKS1B Missense_Mutation p.D587Y 0.32 deleterious(0.01) benign(0.003) TCGA-85-8350-01 13 113742029 113742029 C T MCF2L Silent p.A868A 0.12 TCGA-85-8350-01 13 23905211 23905211 G A SACS Silent p.F4268F 0.30 TCGA-85-8350-01 13 25281434 25281434 A G ATP12A Missense_Mutation p.N792D 0.24 deleterious(0) probably_damaging(1) TCGA-85-8350-01 13 37006863 37006863 C T CCNA1 Silent p.F35F 0.22 TCGA-85-8350-01 13 37595621 37595621 C A SUPT20H Missense_Mutation p.A594S 0.25 tolerated(0.1) benign(0.103) TCGA-85-8350-01 13 39266467 39266467 G A FREM2 Silent p.K1662K 0.19 TCGA-85-8350-01 13 40256307 40256307 G A COG6 Splice_Site p.X232_splice 0.08 TCGA-85-8350-01 13 40256308 40256308 G T COG6 Missense_Mutation p.S232I 0.08 deleterious(0) possibly_damaging(0.646) TCGA-85-8350-01 13 60485958 60485958 G A DIAPH3 Missense_Mutation p.H760Y 0.12 tolerated(0.54) probably_damaging(0.997) TCGA-85-8350-01 13 70535524 70535524 C A KLHL1 Missense_Mutation p.V245F 0.24 deleterious(0.02) possibly_damaging(0.501) TCGA-85-8350-01 13 84453541 84453541 G C SLITRK1 3'UTR 0.24 TCGA-85-8350-01 14 106757908 106757908 G T IGHV2-26 Silent p.P33P 0.38 TCGA-85-8350-01 14 107199390 107199390 A G IGHV3-72 Translation_Start_Site p.M1? 0.35 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-85-8350-01 14 19563653 19563653 C A POTEG Intron 0.21 TCGA-85-8350-01 14 22392734 22392734 T A TRAV14DV4 Nonsense_Mutation p.L86* 0.47 TCGA-85-8350-01 14 22447110 22447110 C A TRAV8-6 Missense_Mutation p.P31T 0.43 tolerated(1) benign(0) TCGA-85-8350-01 14 55612024 55612024 C A LGALS3 3'UTR 0.69 TCGA-85-8350-01 14 79181376 79181376 G A NRXN3 Silent p.Q273Q 0.35 TCGA-85-8350-01 14 81670321 81670321 T C GTF2A1 Missense_Mutation p.H87R 0.26 tolerated(0.1) benign(0.046) TCGA-85-8350-01 14 86089885 86089885 G T FLRT2 3'UTR 0.33 TCGA-85-8350-01 14 93118169 93118169 G T RIN3 Missense_Mutation p.A259S 0.36 tolerated(1) unknown(0) TCGA-85-8350-01 15 22709053 22709053 T G AC116165.1 5'Flank 0.38 TCGA-85-8350-01 15 22709054 22709054 G T AC116165.1 5'Flank 0.38 TCGA-85-8350-01 15 25470211 25470211 G T SNORD115-27 3'Flank 0.31 TCGA-85-8350-01 15 45556939 45556939 A G SLC28A2 Silent p.V225V 0.14 TCGA-85-8350-01 15 55527117 55527117 A C RAB27A Missense_Mutation p.Y6D 0.21 deleterious(0) probably_damaging(0.999) TCGA-85-8350-01 15 62274724 62274724 C A VPS13C Missense_Mutation p.D655Y 0.22 deleterious(0.01) possibly_damaging(0.886) TCGA-85-8350-01 15 63918295 63918295 C T HERC1 Silent p.A4388A 0.18 TCGA-85-8350-01 15 69238021 69238021 G A SPESP1 Missense_Mutation p.G50R 0.18 tolerated(1) benign(0) TCGA-85-8350-01 15 78219124 78219124 T C RP11-114H24.7 3'Flank 0.21 TCGA-85-8350-01 15 83677324 83677324 C A C15orf40 Missense_Mutation p.R114S 0.27 deleterious(0.04) possibly_damaging(0.835) TCGA-85-8350-01 16 21847254 21847254 C T NPIPB4 Intron 0.20 TCGA-85-8350-01 16 2215879 2215879 G T TRAF7 Splice_Site p.X28_splice 0.20 TCGA-85-8350-01 16 29848215 29848215 G T MVP Missense_Mutation p.C282F 0.26 deleterious(0) benign(0.343) TCGA-85-8350-01 16 30721289 30721289 G T SRCAP Missense_Mutation p.R325L 0.15 unknown(0) TCGA-85-8350-01 16 31478096 31478096 G T ARMC5 Silent p.R898R 0.22 TCGA-85-8350-01 16 31483494 31483494 C T TGFB1I1 5'UTR 0.22 TCGA-85-8350-01 16 50666209 50666209 G A NKD1 Missense_Mutation p.R238H 0.30 tolerated(0.58) benign(0.004) TCGA-85-8350-01 16 50750805 50750805 A G NOD2 Silent p.L850L 0.22 TCGA-85-8350-01 16 56623821 56623821 G A MT3 Missense_Mutation p.G24E 0.23 tolerated(1) unknown(0) TCGA-85-8350-01 16 57735871 57735871 C A CCDC135 Silent p.T176T 0.22 TCGA-85-8350-01 16 613325 613325 G T C16orf11 Missense_Mutation p.G11C 0.21 deleterious(0.03) possibly_damaging(0.68) TCGA-85-8350-01 16 67865055 67865055 C A CENPT Intron 0.25 TCGA-85-8350-01 16 70500038 70500038 C T FUK Nonsense_Mutation p.R97* 0.20 TCGA-85-8350-01 16 73126878 73126878 C T HCCAT5 RNA 0.30 TCGA-85-8350-01 17 2290670 2290670 G T MNT Missense_Mutation p.P425Q 0.18 deleterious(0.04) unknown(0) TCGA-85-8350-01 17 26658913 26658913 C T IFT20 Silent p.L59L 0.28 TCGA-85-8350-01 17 2966404 2966404 C A OR1D5 Silent p.V166V 0.34 TCGA-85-8350-01 17 36365135 36365135 C T RP11-1407O15.2 Missense_Mutation p.D154N 0.06 TCGA-85-8350-01 17 39316866 39316866 G T KRTAP4-4 Nonsense_Mutation p.C26* 0.17 TCGA-85-8350-01 17 39633194 39633194 C A KRT35 Intron 0.18 TCGA-85-8350-01 17 39633195 39633195 C A KRT35 Splice_Site 0.20 TCGA-85-8350-01 17 40705280 40705280 G C HSD17B1 Missense_Mutation p.R79P 0.21 tolerated(0.17) possibly_damaging(0.821) TCGA-85-8350-01 17 42477949 42477949 C T GPATCH8 Missense_Mutation p.S499N 0.27 tolerated(0.31) benign(0.021) TCGA-85-8350-01 17 42929774 42929774 C T EFTUD2 Intron 0.22 TCGA-85-8350-01 17 65174964 65174964 A G HELZ Missense_Mutation p.I414T 0.28 deleterious(0.04) benign(0.029) TCGA-85-8350-01 17 65924517 65924517 C G BPTF Missense_Mutation p.T1933S 0.26 benign(0.279) TCGA-85-8350-01 17 67150131 67150131 C A ABCA10 Missense_Mutation p.R1269I 0.20 tolerated(0.13) benign(0.296) TCGA-85-8350-01 17 7578215 7578230 AAGTGTTTCTGTCATC - TP53 Frame_Shift_Del p.D207Ffs*35 0.21 TCGA-85-8350-01 17 76060982 76060982 G A TNRC6C Missense_Mutation p.G856S 0.17 tolerated(1) benign(0.001) TCGA-85-8350-01 18 21119767 21119767 G A NPC1 Intron 0.14 TCGA-85-8350-01 18 28609501 28609501 C A DSC3 Missense_Mutation p.G150C 0.27 deleterious(0) probably_damaging(1) TCGA-85-8350-01 18 50985802 50985802 T A DCC Missense_Mutation p.L1198Q 0.21 deleterious(0.01) possibly_damaging(0.739) TCGA-85-8350-01 18 55027244 55027244 T A ST8SIA3 Missense_Mutation p.H293Q 0.31 benign(0.017) TCGA-85-8350-01 18 64172021 64172021 C G CDH19 3'UTR 0.17 TCGA-85-8350-01 19 19329835 19329835 C A NCAN Missense_Mutation p.T62N 0.17 deleterious(0.02) possibly_damaging(0.691) TCGA-85-8350-01 19 20229877 20229877 G A ZNF90 Missense_Mutation p.G505E 0.22 tolerated(0.05) possibly_damaging(0.691) TCGA-85-8350-01 19 20229974 20229974 C A ZNF90 Nonsense_Mutation p.Y537* 0.15 TCGA-85-8350-01 19 20807419 20807419 C G ZNF626 Missense_Mutation p.E422Q 0.08 deleterious(0.05) probably_damaging(0.993) TCGA-85-8350-01 19 21926847 21926847 C G ZNF100 Missense_Mutation p.K98N 0.08 deleterious(0.03) possibly_damaging(0.466) TCGA-85-8350-01 19 21934364 21934364 C A ZNF100 Intron 0.21 TCGA-85-8350-01 19 22940276 22940276 G C ZNF99 Missense_Mutation p.T812S 0.07 tolerated(0.15) benign(0.024) TCGA-85-8350-01 19 30935282 30935282 G C ZNF536 Silent p.A271A 0.33 TCGA-85-8350-01 19 31039136 31039136 G A ZNF536 Silent p.S870S 0.29 TCGA-85-8350-01 19 3148745 3148745 A G GNA15 Missense_Mutation p.Q101R 0.55 tolerated(0.36) benign(0.401) TCGA-85-8350-01 19 35176419 35176419 G A ZNF302 3'UTR 0.06 TCGA-85-8350-01 19 36239619 36239619 C T LIN37 5'UTR 0.07 TCGA-85-8350-01 19 37118299 37118299 C T ZNF382 Silent p.A500A 0.09 TCGA-85-8350-01 19 37905014 37905014 G C ZNF569 Silent p.V182V 0.13 TCGA-85-8350-01 19 37975616 37975616 G C ZNF570 Silent p.G364G 0.44 TCGA-85-8350-01 19 38983187 38983187 G A RYR1 Missense_Mutation p.R2062H 0.18 possibly_damaging(0.457) TCGA-85-8350-01 19 42083795 42083795 C A CEACAM21 Missense_Mutation p.P103H 0.45 tolerated(0.09) benign(0.364) TCGA-85-8350-01 19 43757799 43757799 C A PSG9 Splice_Site p.X415_splice 0.11 TCGA-85-8350-01 19 46842831 46842832 - C HIF3A Frame_Shift_Ins p.G656Rfs*14 0.33 TCGA-85-8350-01 19 48922609 48922609 G T GRIN2D Silent p.T618T 0.28 TCGA-85-8350-01 19 49012190 49012190 C T LMTK3 Missense_Mutation p.A188T 0.28 benign(0.18) TCGA-85-8350-01 19 51329117 51329117 G A KLK15 Missense_Mutation p.P236S 0.35 deleterious(0) probably_damaging(0.964) TCGA-85-8350-01 19 53057945 53057945 G A ZNF808 Silent p.E592E 0.06 TCGA-85-8350-01 19 53473917 53473917 A G CTD-2620I22.1 RNA 0.21 TCGA-85-8350-01 19 54308670 54308670 C A NLRP12 Nonsense_Mutation p.E760* 0.29 TCGA-85-8350-01 19 58102286 58102286 C G ZIK1 Missense_Mutation p.H369Q 0.19 deleterious(0) probably_damaging(0.997) TCGA-85-8350-01 19 58145248 58145248 G T ZNF211 Intron 0.31 TCGA-85-8350-01 19 58578296 58578296 C T ZNF135 Silent p.A172A 0.09 TCGA-85-8350-01 19 804535 804535 G T PTBP1 Missense_Mutation p.A147S 0.30 tolerated(0.16) possibly_damaging(0.493) TCGA-85-8350-01 1 10720013 10720013 G T CASZ1 Silent p.A362A 0.33 TCGA-85-8350-01 1 114380326 114380326 G A PTPN22 Silent p.L566L 0.05 TCGA-85-8350-01 1 115168708 115168708 C G DENND2C 5'UTR 0.25 TCGA-85-8350-01 1 120301811 120301811 C A HMGCS2 Missense_Mutation p.Q260H 0.28 deleterious(0.01) possibly_damaging(0.792) TCGA-85-8350-01 1 146673002 146673002 C A FMO5 Missense_Mutation p.K305N 0.21 deleterious(0.01) possibly_damaging(0.673) TCGA-85-8350-01 1 152187647 152187647 G T HRNR Nonsense_Mutation p.S2153* 0.02 TCGA-85-8350-01 1 153533859 153533859 A C S100A2 3'UTR 0.25 TCGA-85-8350-01 1 154919173 154919173 G A PBXIP1 Missense_Mutation p.A326V 0.21 tolerated(0.1) probably_damaging(0.994) TCGA-85-8350-01 1 158368957 158368957 G C OR10T2 Silent p.T100T 0.12 TCGA-85-8350-01 1 158390191 158390191 C A OR10K2 Missense_Mutation p.A156S 0.26 tolerated(0.75) benign(0.059) TCGA-85-8350-01 1 158619702 158619702 A T SPTA1 Silent p.L1171L 0.14 TCGA-85-8350-01 1 159558246 159558246 G T APCS Missense_Mutation p.Q140H 0.21 deleterious(0) benign(0.071) TCGA-85-8350-01 1 160395190 160395190 G T VANGL2 3'UTR 0.31 TCGA-85-8350-01 1 161969902 161969902 C A OLFML2B Splice_Site p.X317_splice 0.22 TCGA-85-8350-01 1 16255297 16255299 TAA - SPEN In_Frame_Del p.N855del 0.22 TCGA-85-8350-01 1 171506418 171506418 A G PRRC2C Silent p.K768K 0.38 TCGA-85-8350-01 1 175113602 175113602 C A TNN Silent p.A1225A 0.17 TCGA-85-8350-01 1 17725310 17725310 G C PADI6 RNA 0.19 TCGA-85-8350-01 1 192547464 192547464 T C RGS1 Silent p.C131C 0.12 TCGA-85-8350-01 1 19427041 19427041 A G UBR4 Silent p.F4350F 0.27 TCGA-85-8350-01 1 197062355 197062355 T C ASPM Missense_Mutation p.R3041G 0.28 deleterious(0) probably_damaging(0.996) TCGA-85-8350-01 1 197091139 197091139 C A ASPM Missense_Mutation p.R1259M 0.20 deleterious(0) probably_damaging(0.999) TCGA-85-8350-01 1 197398652 197398652 C A CRB1 Missense_Mutation p.T917K 0.27 deleterious(0.03) benign(0.209) TCGA-85-8350-01 1 203014991 203014991 T A PPFIA4 Translation_Start_Site p.M1? 0.26 deleterious(0) benign(0.306) TCGA-85-8350-01 1 206224953 206224953 T A AVPR1B Silent p.I171I 0.28 TCGA-85-8350-01 1 215848183 215848183 G T USH2A Nonsense_Mutation p.S4357* 0.16 TCGA-85-8350-01 1 216497032 216497032 G A USH2A Missense_Mutation p.T445I 0.23 benign(0.034) TCGA-85-8350-01 1 217804291 217804291 T A GPATCH2 Missense_Mutation p.Q8L 0.24 tolerated_low_confidence(0.1) benign(0.021) TCGA-85-8350-01 1 247875557 247875557 G T OR6F1 Silent p.S167S 0.20 TCGA-85-8350-01 1 36755096 36755096 G A THRAP3 Silent p.E492E 0.13 TCGA-85-8350-01 1 40041512 40041512 G A PABPC4 Silent p.L38L 0.06 TCGA-85-8350-01 1 48690455 48690455 G C SLC5A9 Missense_Mutation p.M74I 0.17 deleterious(0.04) benign(0.021) TCGA-85-8350-01 1 62740424 62740424 C G KANK4 Missense_Mutation p.A118P 0.20 tolerated(0.13) benign(0.045) TCGA-85-8350-01 1 71437274 71437274 A G PTGER3 Intron 0.41 TCGA-85-8350-01 1 74671371 74671371 C T FPGT Missense_Mutation p.A547V 0.26 deleterious(0.03) benign(0.126) TCGA-85-8350-01 1 74832999 74832999 T A FPGT-TNNI3K Missense_Mutation p.C527S 0.03 deleterious(0.01) possibly_damaging(0.79) TCGA-85-8350-01 1 75065560 75065560 T A C1orf173 Missense_Mutation p.E515D 0.28 tolerated(0.15) benign(0.209) TCGA-85-8350-01 1 75078370 75078370 C G C1orf173 Missense_Mutation p.R375T 0.18 deleterious(0) probably_damaging(0.996) TCGA-85-8350-01 1 76344695 76344695 G T MSH4 Missense_Mutation p.G520V 0.21 deleterious(0.02) benign(0.143) TCGA-85-8350-01 1 77588022 77588022 C T PIGK Missense_Mutation p.E337K 0.05 tolerated(0.27) benign(0.001) TCGA-85-8350-01 1 78099047 78099048 - A ZZZ3 5'UTR 0.22 TCGA-85-8350-01 1 78958717 78958717 G C PTGFR Missense_Mutation p.E97Q 0.17 tolerated(0.43) benign(0.244) TCGA-85-8350-01 1 85498397 85498397 A T MCOLN3 Nonsense_Mutation p.C238* 0.14 TCGA-85-8350-01 20 41306776 41306776 G C PTPRT Missense_Mutation p.P295A 0.28 deleterious(0) probably_damaging(0.998) TCGA-85-8350-01 20 42341653 42341653 C T MYBL2 Silent p.S577S 0.18 TCGA-85-8350-01 20 57768562 57768562 C T ZNF831 Silent p.L830L 0.22 TCGA-85-8350-01 20 61461878 61461878 G A COL9A3 Missense_Mutation p.G409S 0.16 deleterious(0) probably_damaging(1) TCGA-85-8350-01 20 61944509 61944509 G A COL20A1 Missense_Mutation p.G706D 0.38 deleterious(0.02) benign(0.4) TCGA-85-8350-01 21 40847120 40847120 G A SH3BGR Silent p.L160L 0.48 TCGA-85-8350-01 21 47404312 47404312 G - COL6A1 Frame_Shift_Del p.V120Sfs*28 0.25 TCGA-85-8350-01 21 47831241 47831241 G T PCNT Nonsense_Mutation p.E1752* 0.05 TCGA-85-8350-01 22 22749766 22749766 C T IGLV7-43 Missense_Mutation p.S97L 0.22 deleterious(0.01) benign(0.01) TCGA-85-8350-01 22 23237944 23237944 A T IGLL5 3'UTR 0.28 TCGA-85-8350-01 22 26164867 26164867 G T MYO18B Missense_Mutation p.W328C 0.27 deleterious_low_confidence(0.05) benign(0.221) TCGA-85-8350-01 22 36591389 36591389 C A APOL4 Missense_Mutation p.W62C 0.26 deleterious(0) probably_damaging(0.996) TCGA-85-8350-01 22 38882373 38882373 C T DDX17 Missense_Mutation p.R588Q 0.13 deleterious_low_confidence(0.05) possibly_damaging(0.854) TCGA-85-8350-01 22 45802444 45802444 T G SMC1B Missense_Mutation p.K171T 0.07 tolerated(0.07) probably_damaging(0.994) TCGA-85-8350-01 2 107446548 107446548 G C ST6GAL2 Missense_Mutation p.P431R 0.10 probably_damaging(0.999) TCGA-85-8350-01 2 11052727 11052727 G T KCNF1 Missense_Mutation p.G59C 0.27 tolerated(0.07) probably_damaging(0.934) TCGA-85-8350-01 2 11053767 11053767 C T KCNF1 Silent p.I405I 0.19 TCGA-85-8350-01 2 118575203 118575203 C T DDX18 Missense_Mutation p.S90F 0.11 deleterious_low_confidence(0.02) benign(0.002) TCGA-85-8350-01 2 121554949 121554949 G T GLI2 Missense_Mutation p.G18V 0.29 deleterious_low_confidence(0.04) benign(0.444) TCGA-85-8350-01 2 131984434 131984434 A T POTEE Missense_Mutation p.Q283H 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.848) TCGA-85-8350-01 2 135107450 135107450 G T MGAT5 Missense_Mutation p.G396V 0.10 deleterious(0) probably_damaging(0.992) TCGA-85-8350-01 2 136630350 136630350 C T MCM6 Silent p.E57E 0.08 TCGA-85-8350-01 2 137988648 137988648 C T THSD7B Silent p.P586P 0.08 TCGA-85-8350-01 2 141201896 141201896 T G LRP1B Intron 0.32 TCGA-85-8350-01 2 141526818 141526818 C A LRP1B Nonsense_Mutation p.G1908* 0.24 TCGA-85-8350-01 2 15378663 15378663 G C NBAS Missense_Mutation p.L1958V 0.40 deleterious(0.02) probably_damaging(0.997) TCGA-85-8350-01 2 155102481 155102481 A C GALNT13 Missense_Mutation p.R281S 0.29 tolerated(0.12) benign(0.249) TCGA-85-8350-01 2 163138972 163138972 C T IFIH1 Missense_Mutation p.V404I 0.12 tolerated(0.09) possibly_damaging(0.891) TCGA-85-8350-01 2 166870350 166870350 T C SCN1A Silent p.Q1203Q 0.28 TCGA-85-8350-01 2 170070318 170070318 G T LRP2 Silent p.P1963P 0.22 TCGA-85-8350-01 2 179611307 179611307 G T TTN Intron 0.28 TCGA-85-8350-01 2 196581576 196581576 A T SLC39A10 Nonsense_Mutation p.K638* 0.08 TCGA-85-8350-01 2 197008306 197008306 G A STK17B Silent p.I195I 0.35 TCGA-85-8350-01 2 204137434 204137434 T G CYP20A1 Silent p.L214L 0.16 TCGA-85-8350-01 2 211179807 211179807 C T MYL1 5'UTR 0.05 TCGA-85-8350-01 2 217124150 217124150 G C MARCH4 Missense_Mutation p.S373C 0.29 tolerated(0.05) benign(0.423) TCGA-85-8350-01 2 220102584 220102584 C T GLB1L Silent p.G479G 0.13 TCGA-85-8350-01 2 230902138 230902138 T C SLC16A14 Missense_Mutation p.I497M 0.14 tolerated(0.09) benign(0.033) TCGA-85-8350-01 2 238672042 238672042 G T LRRFIP1 Missense_Mutation p.L562F 0.35 deleterious(0.03) benign(0.252) TCGA-85-8350-01 2 242072289 242072289 C A PASK Missense_Mutation p.G488V 0.15 deleterious(0.02) possibly_damaging(0.897) TCGA-85-8350-01 2 26609349 26609349 T A EPT1 Missense_Mutation p.L347Q 0.30 deleterious(0) probably_damaging(0.985) TCGA-85-8350-01 2 26689966 26689966 C T OTOF Splice_Site p.X1454_splice 0.10 TCGA-85-8350-01 2 31467154 31467154 A T EHD3 Missense_Mutation p.Q81L 0.36 deleterious(0.01) benign(0.315) TCGA-85-8350-01 2 37152283 37152283 C A STRN Missense_Mutation p.R101S 0.07 deleterious(0) probably_damaging(0.997) TCGA-85-8350-01 2 37234247 37234247 C A HEATR5B Missense_Mutation p.G1575C 0.29 deleterious(0.03) benign(0.428) TCGA-85-8350-01 2 48032803 48032803 C T MSH6 Silent p.L1201L 0.06 TCGA-85-8350-01 2 62069381 62069381 C T FAM161A Missense_Mutation p.E100K 0.09 tolerated(0.08) benign(0.365) TCGA-85-8350-01 2 74604805 74604805 C A DCTN1 Missense_Mutation p.D110Y 0.08 deleterious(0.01) possibly_damaging(0.646) TCGA-85-8350-01 2 74906795 74906795 C T SEMA4F Missense_Mutation p.S591L 0.26 deleterious(0) probably_damaging(0.998) TCGA-85-8350-01 2 89976266 89976266 G T IGKV2D-30 Missense_Mutation p.S46I 0.17 deleterious(0.01) probably_damaging(0.96) TCGA-85-8350-01 3 101090915 101090915 T A SENP7 Missense_Mutation p.N245Y 0.17 deleterious(0.03) benign(0.065) TCGA-85-8350-01 3 113342544 113342544 C A SIDT1 Silent p.A757A 0.38 TCGA-85-8350-01 3 113342545 113342545 C A SIDT1 Missense_Mutation p.L758I 0.38 tolerated(0.1) possibly_damaging(0.897) TCGA-85-8350-01 3 115395322 115395322 C A GAP43 Missense_Mutation p.P201T 0.14 deleterious(0) possibly_damaging(0.895) TCGA-85-8350-01 3 119204174 119204174 G T POGLUT1 Splice_Site p.X193_splice 0.15 TCGA-85-8350-01 3 120500316 120500316 G A GTF2E1 Silent p.%3D 0.17 TCGA-85-8350-01 3 127399216 127399216 C A ABTB1 Missense_Mutation p.F445L 0.20 deleterious(0.01) possibly_damaging(0.49) TCGA-85-8350-01 3 129695568 129695568 C A TRH Missense_Mutation p.L80I 0.16 tolerated(0.27) benign(0.136) TCGA-85-8350-01 3 130405098 130405098 G A PIK3R4 Silent p.I1144I 0.17 TCGA-85-8350-01 3 14712715 14712715 G T CCDC174 3'UTR 0.26 TCGA-85-8350-01 3 14862083 14862083 G T FGD5 Missense_Mutation p.G502V 0.41 deleterious(0.01) probably_damaging(0.971) TCGA-85-8350-01 3 148925194 148925194 G C CP Missense_Mutation p.P331R 0.38 tolerated(0.07) possibly_damaging(0.733) TCGA-85-8350-01 3 150911442 150911442 C G MED12L Missense_Mutation p.P712A 0.17 deleterious(0.01) benign(0.422) TCGA-85-8350-01 3 155203385 155203385 G A PLCH1 Missense_Mutation p.R920C 0.24 deleterious(0) probably_damaging(1) TCGA-85-8350-01 3 164792362 164792362 A G SI Missense_Mutation p.V71A 0.70 tolerated(0.51) benign(0.006) TCGA-85-8350-01 3 169644889 169644889 A C SAMD7 Missense_Mutation p.E280A 0.07 tolerated(0.09) benign(0.113) TCGA-85-8350-01 3 170723124 170723124 G A SLC2A2 Silent p.L305L 0.03 TCGA-85-8350-01 3 180372716 180372716 G A CCDC39 Missense_Mutation p.T255M 0.17 tolerated(0.09) benign(0.045) TCGA-85-8350-01 3 183699654 183699654 T G ABCC5 Silent p.A336A 0.11 TCGA-85-8350-01 3 184870595 184870595 G A C3orf70 Missense_Mutation p.S6L 0.11 deleterious_low_confidence(0.02) benign(0.001) TCGA-85-8350-01 3 197665481 197665481 G A IQCG Silent p.F151F 0.40 TCGA-85-8350-01 3 197665484 197665484 G A IQCG Silent p.V150V 0.40 TCGA-85-8350-01 3 73434852 73434852 C T PDZRN3 Missense_Mutation p.A535T 0.32 deleterious(0.04) benign(0.271) TCGA-85-8350-01 3 89521667 89521667 C A EPHA3 Missense_Mutation p.T915K 0.25 deleterious(0) benign(0.002) TCGA-85-8350-01 3 98002317 98002317 G T OR5H2 Missense_Mutation p.D196Y 0.19 deleterious(0) probably_damaging(0.996) TCGA-85-8350-01 4 155665632 155665632 G A LRAT Missense_Mutation p.E52K 0.36 deleterious(0) probably_damaging(0.938) TCGA-85-8350-01 4 160244613 160244613 G T RAPGEF2 Silent p.L170L 0.30 TCGA-85-8350-01 4 177046478 177046478 C T WDR17 Silent p.P278P 0.38 TCGA-85-8350-01 4 46099230 46099230 G A GABRG1 Missense_Mutation p.P81S 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-85-8350-01 4 55948133 55948133 G T KDR Missense_Mutation p.P1280T 0.26 tolerated(0.63) benign(0.005) TCGA-85-8350-01 4 6107580 6107580 T G JAKMIP1 Missense_Mutation p.K82Q 0.30 tolerated(0.14) benign(0.353) TCGA-85-8350-01 4 8608462 8608462 A T CPZ Splice_Site p.X303_splice 0.26 TCGA-85-8350-01 4 89022402 89022402 C G ABCG2 Silent p.V449V 0.26 TCGA-85-8350-01 4 89189991 89189991 T A PPM1K Silent p.V203V 0.29 TCGA-85-8350-01 5 101572646 101572646 T G SLCO4C1 Silent p.T697T 0.25 TCGA-85-8350-01 5 121780386 121780386 G A SNCAIP Silent p.S517S 0.31 TCGA-85-8350-01 5 1238170 1238170 C T SLC6A18 Missense_Mutation p.P243S 0.19 deleterious(0) probably_damaging(1) TCGA-85-8350-01 5 1338087 1338087 C G CLPTM1L Missense_Mutation p.G204R 0.13 deleterious(0.04) benign(0.296) TCGA-85-8350-01 5 137244606 137244606 T G PKD2L2 Silent p.V433V 0.18 TCGA-85-8350-01 5 137342705 137342705 C A FAM13B Silent p.L274L 0.18 TCGA-85-8350-01 5 13753507 13753507 A G DNAH5 Silent p.D3569D 0.69 TCGA-85-8350-01 5 140202981 140202981 G T PCDHA5 Missense_Mutation p.V541L 0.17 tolerated_low_confidence(0.17) benign(0.247) TCGA-85-8350-01 5 140242124 140242124 T C AC005609.1 3'UTR 0.25 TCGA-85-8350-01 5 140250791 140250791 C A PCDHA11 Silent p.I701I 0.16 TCGA-85-8350-01 5 140475911 140475911 G T PCDHB2 Missense_Mutation p.G513C 0.32 deleterious_low_confidence(0) probably_damaging(1) TCGA-85-8350-01 5 140516927 140516927 C G PCDHB5 Missense_Mutation p.H637Q 0.20 tolerated_low_confidence(0.36) benign(0.063) TCGA-85-8350-01 5 140531234 140531234 C A PCDHB6 Missense_Mutation p.L466M 0.27 deleterious_low_confidence(0.02) possibly_damaging(0.46) TCGA-85-8350-01 5 140562153 140562153 C A PCDHB16 Missense_Mutation p.H7N 0.26 tolerated_low_confidence(0.21) benign(0.023) TCGA-85-8350-01 5 140720013 140720013 C T PCDHGA2 Missense_Mutation p.A492V 0.13 tolerated_low_confidence(0.31) benign(0.168) TCGA-85-8350-01 5 140725985 140725985 G T PCDHGA3 Missense_Mutation p.Q795H 0.20 tolerated_low_confidence(0.08) benign(0.025) TCGA-85-8350-01 5 140725986 140725986 G T PCDHGA3 Missense_Mutation p.D796Y 0.20 deleterious_low_confidence(0) benign(0.188) TCGA-85-8350-01 5 140784430 140784430 G T PCDHGA9 Silent p.A637A 0.17 TCGA-85-8350-01 5 150657074 150657074 C T SLC36A3 Silent p.K472K 0.32 TCGA-85-8350-01 5 150696548 150696548 C A SLC36A2 Missense_Mutation p.V428F 0.10 deleterious(0) benign(0.367) TCGA-85-8350-01 5 156929917 156929917 C A ADAM19 Missense_Mutation p.G401V 0.30 deleterious(0) probably_damaging(0.992) TCGA-85-8350-01 5 162944721 162944721 G T MAT2B Intron 0.36 TCGA-85-8350-01 5 169446092 169446092 A G DOCK2 Missense_Mutation p.R1121G 0.14 tolerated(0.34) benign(0.002) TCGA-85-8350-01 5 169474606 169474606 C A DOCK2 Silent p.P1353P 0.31 TCGA-85-8350-01 5 175572106 175572106 C G RP11-844P9.2 RNA 0.33 TCGA-85-8350-01 5 176306485 176306485 G T UNC5A Missense_Mutation p.D787Y 0.21 deleterious(0) probably_damaging(0.956) TCGA-85-8350-01 5 179548145 179548145 C T RASGEF1C Missense_Mutation p.C240Y 0.30 tolerated(0.29) benign(0.392) TCGA-85-8350-01 5 181681 181681 G T PLEKHG4B Missense_Mutation p.M1129I 0.76 deleterious(0.01) benign(0.027) TCGA-85-8350-01 5 21755753 21755753 C G CDH12 Missense_Mutation p.G611A 0.10 deleterious(0.04) benign(0.301) TCGA-85-8350-01 5 24491877 24491877 A C CDH10 Missense_Mutation p.Y562D 0.59 deleterious(0) probably_damaging(0.995) TCGA-85-8350-01 5 24498549 24498549 C T CDH10 Silent p.V491V 0.04 TCGA-85-8350-01 5 35871315 35871315 G T IL7R Silent p.T179T 0.64 TCGA-85-8350-01 5 36039580 36039580 C G UGT3A2 Silent p.L358L 0.07 TCGA-85-8350-01 5 82837361 82837361 A G VCAN Missense_Mutation p.S2847G 0.32 tolerated(0.07) benign(0.016) TCGA-85-8350-01 6 106547189 106547189 G T PRDM1 Silent p.G142G 0.10 TCGA-85-8350-01 6 118588228 118588228 C A SLC35F1 Missense_Mutation p.A183D 0.27 deleterious(0.02) possibly_damaging(0.449) TCGA-85-8350-01 6 132643899 132643899 C T MOXD1 Missense_Mutation p.M408I 0.06 tolerated(0.22) benign(0.1) TCGA-85-8350-01 6 13283712 13283712 G C TBC1D7 Intron 0.24 TCGA-85-8350-01 6 137814886 137814886 A T OLIG3 Missense_Mutation p.L141Q 0.20 deleterious(0) probably_damaging(0.995) TCGA-85-8350-01 6 144801071 144801071 G T UTRN Nonsense_Mutation p.E1154* 0.15 TCGA-85-8350-01 6 152443677 152443677 C G SYNE1 Missense_Mutation p.C8763S 0.13 benign(0.107) TCGA-85-8350-01 6 152647662 152647662 T C SYNE1 Missense_Mutation p.N5021S 0.31 benign(0.01) TCGA-85-8350-01 6 152748801 152748801 T C SYNE1 Intron 0.25 TCGA-85-8350-01 6 160412322 160412322 C T IGF2R Missense_Mutation p.H86Y 0.26 tolerated(1) benign(0.001) TCGA-85-8350-01 6 26056640 26056640 G A HIST1H1C Missense_Mutation p.P6L 0.23 tolerated(0.06) possibly_damaging(0.713) TCGA-85-8350-01 6 30080583 30080583 G A TRIM31 5'UTR 0.15 TCGA-85-8350-01 6 31507052 31507052 C A DDX39B Splice_Site p.X71_splice 0.04 TCGA-85-8350-01 6 31962366 31962366 G T C4A Missense_Mutation p.R895L 0.09 tolerated(1) benign(0.006) TCGA-85-8350-01 6 32714142 32714142 G T HLA-DQA2 Missense_Mutation p.G247C 0.18 deleterious(0.01) possibly_damaging(0.853) TCGA-85-8350-01 6 33283946 33283946 C A ZBTB22 Nonsense_Mutation p.G250* 0.29 TCGA-85-8350-01 6 33284435 33284435 G C ZBTB22 Missense_Mutation p.L87V 0.25 deleterious(0) probably_damaging(0.984) TCGA-85-8350-01 6 33287337 33287337 G A DAXX Missense_Mutation p.S587F 0.28 deleterious(0.01) probably_damaging(0.995) TCGA-85-8350-01 6 33289025 33289025 G C DAXX Missense_Mutation p.S176C 0.30 deleterious(0.03) possibly_damaging(0.886) TCGA-85-8350-01 6 33289260 33289260 G C DAXX Missense_Mutation p.L98V 0.26 tolerated(0.3) benign(0.008) TCGA-85-8350-01 6 42583768 42583768 C T UBR2 Silent p.F374F 0.04 TCGA-85-8350-01 6 44268137 44268137 T C AARS2 3'UTR 0.24 TCGA-85-8350-01 6 47654740 47654740 C T GPR111 3'Flank 0.12 TCGA-85-8350-01 6 55214918 55214918 G A GFRAL Nonsense_Mutation p.W115* 0.13 TCGA-85-8350-01 6 64394322 64394322 A G PHF3 Silent p.G233G 0.24 TCGA-85-8350-01 6 69349249 69349249 G T BAI3 Missense_Mutation p.G228C 0.17 tolerated(0.09) probably_damaging(0.997) TCGA-85-8350-01 6 70423554 70423554 C A LMBRD1 Missense_Mutation p.A300S 0.30 deleterious(0.04) benign(0.162) TCGA-85-8350-01 6 85446962 85446962 C A TBX18 Missense_Mutation p.R422L 0.31 deleterious(0.01) probably_damaging(0.931) TCGA-85-8350-01 6 87967660 87967660 A T ZNF292 Missense_Mutation p.Q1438L 0.26 tolerated(0.37) benign(0.064) TCGA-85-8350-01 6 99283363 99283363 G T POU3F2 Missense_Mutation p.G205V 0.29 deleterious(0) benign(0.273) TCGA-85-8350-01 7 100699508 100699508 G T MUC17 Missense_Mutation p.S4466I 0.17 unknown(0) TCGA-85-8350-01 7 100699536 100699536 A T MUC17 Silent p.I4475I 0.12 TCGA-85-8350-01 7 103214727 103214727 C G RELN Silent p.V1441V 0.38 TCGA-85-8350-01 7 1131429 1131429 C A GPER1 Missense_Mutation p.A22E 0.16 tolerated_low_confidence(0.15) benign(0.091) TCGA-85-8350-01 7 121693962 121693962 A G PTPRZ1 Splice_Site p.X2085_splice 0.25 TCGA-85-8350-01 7 123509219 123509219 C T HYAL4 Silent p.L298L 0.21 TCGA-85-8350-01 7 128454867 128454867 G T CCDC136 Missense_Mutation p.G980V 0.24 deleterious(0.02) possibly_damaging(0.804) TCGA-85-8350-01 7 128477518 128477518 C A FLNC Missense_Mutation p.Q256K 0.31 deleterious(0.02) probably_damaging(0.994) TCGA-85-8350-01 7 130027809 130027809 C A CPA1 Missense_Mutation p.A406E 0.27 deleterious(0) probably_damaging(0.985) TCGA-85-8350-01 7 131833404 131833404 C A PLXNA4 Missense_Mutation p.E1554D 0.21 deleterious(0) benign(0.39) TCGA-85-8350-01 7 137374737 137374737 G T DGKI Missense_Mutation p.S138Y 0.30 deleterious(0) probably_damaging(0.993) TCGA-85-8350-01 7 141752725 141752725 C A MGAM Missense_Mutation p.P1034T 0.26 tolerated(0.06) benign(0.094) TCGA-85-8350-01 7 142000841 142000841 C A TRBV2 5'UTR 0.13 TCGA-85-8350-01 7 151962188 151962188 T A KMT2C Silent p.I373I 0.03 TCGA-85-8350-01 7 152549285 152549285 G T ACTR3B Silent p.V342V 0.21 TCGA-85-8350-01 7 154679387 154679387 C A DPP6 Silent p.A749A 0.10 TCGA-85-8350-01 7 154875903 154875903 G C HTR5A Silent p.T260T 0.12 TCGA-85-8350-01 7 154876209 154876209 A C HTR5A 3'UTR 0.24 TCGA-85-8350-01 7 19156374 19156374 T A TWIST1 Missense_Mutation p.R191W 0.25 deleterious(0) probably_damaging(1) TCGA-85-8350-01 7 20721197 20721197 G A ABCB5 Missense_Mutation p.V593M 0.16 tolerated(0.08) possibly_damaging(0.882) TCGA-85-8350-01 7 25175553 25175553 T A C7orf31 3'UTR 0.32 TCGA-85-8350-01 7 34698170 34698170 A T NPSR1 Missense_Mutation p.K49M 0.12 deleterious(0) probably_damaging(0.938) TCGA-85-8350-01 7 44747232 44747232 A C OGDH Missense_Mutation p.N950H 0.18 deleterious(0.01) benign(0.002) TCGA-85-8350-01 7 48315149 48315149 C T ABCA13 Silent p.V1962V 0.23 TCGA-85-8350-01 7 82764745 82764745 C A PCLO Silent p.V707V 0.06 TCGA-85-8350-01 7 8791332 8791332 A C NXPH1 Missense_Mutation p.K250T 0.26 deleterious(0) probably_damaging(0.978) TCGA-85-8350-01 8 10470761 10470761 G T RP1L1 Missense_Mutation p.P283T 0.33 benign(0.204) TCGA-85-8350-01 8 113317020 113317020 T C CSMD3 Silent p.L2732L 0.26 TCGA-85-8350-01 8 113516133 113516133 T A CSMD3 Missense_Mutation p.S1657C 0.24 deleterious(0) probably_damaging(0.997) TCGA-85-8350-01 8 113516162 113516162 C G CSMD3 Missense_Mutation p.G1647A 0.26 deleterious(0.03) probably_damaging(0.958) TCGA-85-8350-01 8 120754873 120754873 T C TAF2 Missense_Mutation p.S1080G 0.17 tolerated_low_confidence(0.18) benign(0.004) TCGA-85-8350-01 8 125033876 125033876 C T FER1L6 Silent p.N700N 0.22 TCGA-85-8350-01 8 140630968 140630968 A T KCNK9 Missense_Mutation p.Y220N 0.21 deleterious(0) probably_damaging(0.999) TCGA-85-8350-01 8 23002016 23002016 C A TNFRSF10D Missense_Mutation p.A301S 0.32 tolerated(0.21) possibly_damaging(0.625) TCGA-85-8350-01 8 26221326 26221326 C T PPP2R2A Nonsense_Mutation p.R308* 0.22 TCGA-85-8350-01 8 31024633 31024633 G T WRN Missense_Mutation p.D1360Y 0.32 deleterious(0.01) possibly_damaging(0.578) TCGA-85-8350-01 8 35544133 35544133 G T UNC5D Silent p.R330R 0.34 TCGA-85-8350-01 8 53568703 53568703 T C RB1CC1 Missense_Mutation p.Q1229R 0.21 tolerated(0.72) benign(0.001) TCGA-85-8350-01 8 67789758 67789758 G T MCMDC2 Nonsense_Mutation p.E154* 0.14 TCGA-85-8350-01 8 69104588 69104588 G C PREX2 Missense_Mutation p.A1478P 0.16 deleterious(0.02) benign(0.001) TCGA-85-8350-01 8 75926229 75926229 G T CRISPLD1 Missense_Mutation p.W173L 0.19 deleterious(0.01) probably_damaging(0.991) TCGA-85-8350-01 8 77768380 77768380 G C ZFHX4 Missense_Mutation p.G3075R 0.16 probably_damaging(0.974) TCGA-85-8350-01 8 8748410 8748410 G A MFHAS1 Missense_Mutation p.P720L 0.08 tolerated(0.46) benign(0.002) TCGA-85-8350-01 8 92972475 92972475 G T RUNX1T1 Missense_Mutation p.R615S 0.39 deleterious_low_confidence(0) unknown(0) TCGA-85-8350-01 8 99105572 99105572 G T C8orf47 3'UTR 0.10 TCGA-85-8350-01 9 100678472 100678472 C T C9orf156 Missense_Mutation p.M75I 0.22 tolerated(0.24) benign(0.115) TCGA-85-8350-01 9 109686440 109686440 G T ZNF462 Nonsense_Mutation p.G83* 0.21 TCGA-85-8350-01 9 139749936 139749936 C T MAMDC4 Missense_Mutation p.P446S 0.16 tolerated(0.18) benign(0.015) TCGA-85-8350-01 9 140459479 140459482 TGAC - DPH7 Intron 0.53 TCGA-85-8350-01 9 20865967 20865967 C G FOCAD Missense_Mutation p.Q700E 0.25 tolerated(0.48) benign(0.016) TCGA-85-8350-01 9 21971108 21971108 C A CDKN2A Missense_Mutation p.D84Y 0.43 deleterious(0) probably_damaging(1) TCGA-85-8350-01 9 38016038 38016038 C A SHB Nonsense_Mutation p.E270* 0.33 TCGA-85-8350-01 9 86280033 86280033 T C UBQLN1 Missense_Mutation p.M454V 0.28 tolerated(0.11) possibly_damaging(0.448) TCGA-85-8350-01 X 134989510 134989510 G A SAGE1 Missense_Mutation p.E306K 0.40 tolerated(0.78) benign(0.003) TCGA-85-8350-01 X 1407771 1407771 C T CSF2RA Nonsense_Mutation p.R155* 0.14 TCGA-85-8350-01 X 147743863 147743863 G T AFF2 Missense_Mutation p.Q205H 0.32 deleterious(0.03) possibly_damaging(0.771) TCGA-85-8350-01 X 148037454 148037454 G C AFF2 Missense_Mutation p.G627R 0.30 deleterious(0) probably_damaging(1) TCGA-85-8350-01 X 152770314 152770314 G A BGN Silent p.Q75Q 0.24 TCGA-85-8350-01 X 153001834 153001834 C T ABCD1 Silent p.H420H 0.23 TCGA-85-8350-01 X 26212435 26212435 G T MAGEB6 Missense_Mutation p.D158Y 0.42 deleterious(0.04) possibly_damaging(0.84) TCGA-85-8350-01 X 34148886 34148886 G A FAM47A Missense_Mutation p.L504F 0.55 tolerated(0.07) probably_damaging(0.986) TCGA-85-8350-01 X 40448315 40448315 G A ATP6AP2 Missense_Mutation p.G39R 0.48 deleterious(0.04) possibly_damaging(0.839) TCGA-85-8350-01 X 53112036 53112036 C G TSPYL2 Missense_Mutation p.P119R 0.36 tolerated(0.05) benign(0.26) TCGA-85-8350-01 X 53279643 53279643 G A IQSEC2 Silent p.S705S 0.63 TCGA-85-8351-01 10 100177953 100177953 A C HPS1 Missense_Mutation p.M640R 0.21 deleterious(0) possibly_damaging(0.602) TCGA-85-8351-01 10 102057150 102057150 G A PKD2L1 Silent p.F315F 0.27 TCGA-85-8351-01 10 124097616 124097616 T C BTBD16 3'UTR 0.16 TCGA-85-8351-01 10 124697411 124697411 C A C10orf88 Nonsense_Mutation p.E305* 0.16 TCGA-85-8351-01 10 126453970 126453970 A T METTL10 Missense_Mutation p.F203I 0.20 deleterious(0.01) probably_damaging(1) TCGA-85-8351-01 10 17373502 17373503 GA - ST8SIA6 Frame_Shift_Del p.Q143Efs*2 0.13 TCGA-85-8351-01 10 37508081 37508081 G C ANKRD30A Missense_Mutation p.Q1091H 0.21 deleterious(0) benign(0.018) TCGA-85-8351-01 10 50863174 50863174 C T CHAT Silent p.S556S 0.33 TCGA-85-8351-01 10 52389390 52389390 A - RP11-50E11.3 RNA 0.16 TCGA-85-8351-01 10 60996263 60996263 G T PHYHIPL Silent p.V108V 0.33 TCGA-85-8351-01 10 60996264 60996264 G T PHYHIPL Missense_Mutation p.A109S 0.33 tolerated(0.08) probably_damaging(1) TCGA-85-8351-01 10 99341142 99341142 C T ANKRD2 Missense_Mutation p.H236Y 0.33 deleterious(0) benign(0.26) TCGA-85-8351-01 11 101857732 101857732 G T KIAA1377 Missense_Mutation p.K1068N 0.11 deleterious(0) probably_damaging(0.978) TCGA-85-8351-01 11 1019473 1019473 C T MUC6 Missense_Mutation p.V1278I 0.16 unknown(0) TCGA-85-8351-01 11 111899281 111899281 G C DLAT Missense_Mutation p.E142Q 0.05 deleterious(0) probably_damaging(1) TCGA-85-8351-01 11 119044339 119044339 C A NLRX1 Silent p.P127P 0.05 TCGA-85-8351-01 11 123813625 123813625 C A OR6T1 Missense_Mutation p.W307C 0.18 tolerated(0.24) benign(0.002) TCGA-85-8351-01 11 124121020 124121020 C T OR8G1 Silent p.L200L 0.14 TCGA-85-8351-01 11 20948854 20948854 C T NELL1 Silent p.L254L 0.22 TCGA-85-8351-01 11 57886053 57886053 C T OR9I1 Silent p.L288L 0.32 TCGA-85-8351-01 11 57886751 57886751 A T OR9I1 Missense_Mutation p.Y56N 0.32 deleterious(0.01) benign(0) TCGA-85-8351-01 11 58035268 58035268 C G OR10W1 Silent p.G21G 0.14 TCGA-85-8351-01 11 59626610 59626610 C T TCN1 Silent p.L229L 0.14 TCGA-85-8351-01 11 60164031 60164031 C A MS4A14 5'UTR 0.37 TCGA-85-8351-01 11 62997028 62997028 G T SLC22A25 Missense_Mutation p.H33N 0.19 deleterious(0.04) benign(0.004) TCGA-85-8351-01 11 65267856 65267856 G A MALAT1 RNA 0.20 TCGA-85-8351-01 12 109306430 109306430 T C SVOP Missense_Mutation p.I445V 0.44 tolerated(0.05) benign(0.198) TCGA-85-8351-01 12 112664446 112664446 C T HECTD4 Splice_Site p.X2178_splice 0.14 TCGA-85-8351-01 12 113715139 113715139 C T TPCN1 Missense_Mutation p.A457V 0.24 tolerated(0.12) probably_damaging(0.999) TCGA-85-8351-01 12 123105150 123105150 A G KNTC1 Missense_Mutation p.I2092V 0.12 tolerated(0.11) probably_damaging(0.956) TCGA-85-8351-01 12 3659137 3659137 C A PRMT8 Nonsense_Mutation p.Y99* 0.21 TCGA-85-8351-01 12 40010959 40010959 T C ABCD2 Silent p.K317K 0.27 TCGA-85-8351-01 12 49952694 49952694 T C MCRS1 Missense_Mutation p.I425V 0.20 tolerated(0.15) benign(0.024) TCGA-85-8351-01 12 50037501 50037502 - A PRPF40B Frame_Shift_Ins p.K806Efs*3 0.17 TCGA-85-8351-01 12 54379122 54379122 C T HOXC10 Missense_Mutation p.R27W 0.06 deleterious(0.01) possibly_damaging(0.703) TCGA-85-8351-01 12 95676341 95676341 C A VEZT Missense_Mutation p.Q417K 0.28 tolerated(1) benign(0.006) TCGA-85-8351-01 13 107823013 107823013 C T FAM155A Silent p.S403S 0.11 TCGA-85-8351-01 13 115091805 115091805 C A CHAMP1 3'UTR 0.35 TCGA-85-8351-01 13 46727072 46727072 C A LCP1 Silent p.L194L 0.26 TCGA-85-8351-01 13 53049249 53049249 G A CKAP2 Silent p.R675R 0.24 TCGA-85-8351-01 13 76407274 76407274 G T LMO7 Missense_Mutation p.G780W 0.24 deleterious(0) probably_damaging(0.999) TCGA-85-8351-01 14 101351094 101351094 G A RTL1 Missense_Mutation p.T11M 0.14 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-85-8351-01 14 101439014 101439014 A T SNORD114-15 RNA 0.18 TCGA-85-8351-01 14 106066543 106066543 C T IGHE Missense_Mutation p.G383S 0.16 tolerated(0.74) benign(0.056) TCGA-85-8351-01 14 39716394 39716394 C G MIA2 Missense_Mutation p.Q206E 0.39 tolerated(0.24) benign(0.027) TCGA-85-8351-01 14 53522511 53522511 G T DDHD1 Missense_Mutation p.N704K 0.18 tolerated(0.16) benign(0.201) TCGA-85-8351-01 14 80164268 80164268 A T NRXN3 Silent p.T931T 0.31 TCGA-85-8351-01 14 94772434 94772434 G T SERPINA6 Missense_Mutation p.Q336K 0.21 tolerated(0.98) benign(0.02) TCGA-85-8351-01 15 26793038 26793038 G A GABRB3 Silent p.L442L 0.10 TCGA-85-8351-01 15 29406138 29406138 C A APBA2 Silent p.R699R 0.35 TCGA-85-8351-01 15 66262953 66262953 A G MEGF11 Silent p.H279H 0.33 TCGA-85-8351-01 15 74565186 74565186 T C CCDC33 Missense_Mutation p.M238T 0.07 tolerated(0.09) benign(0) TCGA-85-8351-01 15 81295681 81295681 A T MESDC1 Missense_Mutation p.N357Y 0.15 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-85-8351-01 15 85383953 85383953 G C ALPK3 Missense_Mutation p.K683N 0.24 deleterious_low_confidence(0) possibly_damaging(0.776) TCGA-85-8351-01 15 91488243 91488243 G A UNC45A Silent p.K383K 0.22 TCGA-85-8351-01 16 2150542 2150542 C A PKD1 Missense_Mutation p.M3141I 0.20 benign(0.281) TCGA-85-8351-01 16 46998524 46998524 T A DNAJA2 Missense_Mutation p.E258V 0.14 tolerated(0.1) benign(0.365) TCGA-85-8351-01 16 66852433 66852433 T C NAE1 Missense_Mutation p.K207E 0.11 deleterious(0.05) benign(0.021) TCGA-85-8351-01 16 66852448 66852448 C A NAE1 Missense_Mutation p.D202Y 0.16 deleterious(0.01) benign(0.228) TCGA-85-8351-01 16 84456853 84456853 C T ATP2C2 Silent p.F301F 0.19 TCGA-85-8351-01 16 87678496 87678496 A G JPH3 Missense_Mutation p.K339E 0.24 deleterious(0) probably_damaging(0.924) TCGA-85-8351-01 17 39502788 39502788 G T KRT33A Missense_Mutation p.Q337K 0.04 deleterious(0) possibly_damaging(0.686) TCGA-85-8351-01 17 42636148 42636148 C A FZD2 Silent p.A364A 0.16 TCGA-85-8351-01 17 49281175 49281175 C A MBTD1 Missense_Mutation p.G239V 0.03 deleterious(0) possibly_damaging(0.697) TCGA-85-8351-01 17 71232208 71232208 A T C17orf80 Missense_Mutation p.D196V 0.58 deleterious(0.01) possibly_damaging(0.474) TCGA-85-8351-01 17 7578395 7578395 G A TP53 Missense_Mutation p.H179Y 0.61 deleterious(0) probably_damaging(1) TCGA-85-8351-01 17 80963063 80963063 T C B3GNTL1 Silent p.R144R 0.06 TCGA-85-8351-01 18 12825944 12825944 C A PTPN2 Splice_Site p.X121_splice 0.19 TCGA-85-8351-01 18 3135623 3135623 G A MYOM1 Missense_Mutation p.R711C 0.09 deleterious(0) probably_damaging(1) TCGA-85-8351-01 18 39567817 39567817 T C PIK3C3 Silent p.D191D 0.08 TCGA-85-8351-01 18 66504086 66504086 T C CCDC102B Missense_Mutation p.M29T 0.38 tolerated(0.32) benign(0.005) TCGA-85-8351-01 18 71796790 71796790 A G FBXO15 Missense_Mutation p.M212T 0.31 tolerated(0.08) benign(0.025) TCGA-85-8351-01 18 74700841 74700841 G A RP11-862L9.3 3'Flank 0.21 TCGA-85-8351-01 18 76753732 76753732 G A SALL3 Missense_Mutation p.A581T 0.36 tolerated(0.13) benign(0.025) TCGA-85-8351-01 18 76757333 76757333 G T SALL3 3'Flank 0.23 TCGA-85-8351-01 19 20229271 20229271 A G ZNF90 Missense_Mutation p.H303R 0.52 deleterious(0.01) probably_damaging(1) TCGA-85-8351-01 19 20308812 20308812 G T ZNF486 Missense_Mutation p.E431D 0.11 deleterious(0.02) possibly_damaging(0.889) TCGA-85-8351-01 19 36033312 36033312 G A GAPDHS Splice_Site p.X180_splice 0.25 TCGA-85-8351-01 19 3733873 3733873 G A TJP3 Silent p.P289P 0.32 TCGA-85-8351-01 19 38849147 38849147 T A CATSPERG Missense_Mutation p.F481Y 0.20 tolerated(0.81) benign(0) TCGA-85-8351-01 19 56925413 56925413 G A ZNF583 Missense_Mutation p.R32K 0.62 tolerated(0.32) benign(0.334) TCGA-85-8351-01 1 100327888 100327888 C T AGL Silent p.P123P 0.18 TCGA-85-8351-01 1 107973399 107973399 G T NTNG1 Missense_Mutation p.R372L 0.18 deleterious(0.03) benign(0.002) TCGA-85-8351-01 1 117491978 117491978 C T PTGFRN Missense_Mutation p.R333W 0.19 tolerated(0.1) probably_damaging(0.912) TCGA-85-8351-01 1 12943167 12943167 G A PRAMEF4 Missense_Mutation p.R17W 0.05 deleterious(0) possibly_damaging(0.768) TCGA-85-8351-01 1 13448411 13448411 A T PRAMEF13 Missense_Mutation p.I355N 0.07 tolerated(0.26) benign(0.002) TCGA-85-8351-01 1 149857902 149857902 T C HIST2H2BE Missense_Mutation p.T97A 0.15 deleterious_low_confidence(0) possibly_damaging(0.869) TCGA-85-8351-01 1 158435948 158435948 A G OR10K1 Missense_Mutation p.I199M 0.47 deleterious(0.03) possibly_damaging(0.853) TCGA-85-8351-01 1 158436054 158436054 T C OR10K1 Missense_Mutation p.Y235H 0.28 tolerated(0.54) benign(0.02) TCGA-85-8351-01 1 16353223 16353223 C T CLCNKA Missense_Mutation p.A203V 0.24 tolerated(0.46) benign(0.155) TCGA-85-8351-01 1 164769020 164769020 C A PBX1 Silent p.R199R 0.08 TCGA-85-8351-01 1 178834440 178834440 T C ANGPTL1 Missense_Mutation p.I158V 0.06 tolerated(1) benign(0.005) TCGA-85-8351-01 1 182555453 182555453 C G RNASEL Silent p.R163R 0.41 TCGA-85-8351-01 1 224377285 224377285 A G DEGS1 Missense_Mutation p.Y30C 0.15 deleterious(0) probably_damaging(0.997) TCGA-85-8351-01 1 228588709 228588709 C A TRIM11 Nonsense_Mutation p.E231* 0.22 TCGA-85-8351-01 1 235827854 235827854 C A LYST Missense_Mutation p.R3702S 0.10 tolerated(0.08) probably_damaging(0.957) TCGA-85-8351-01 1 248005138 248005138 G C OR11L1 Missense_Mutation p.L21V 0.25 tolerated(0.5) benign(0.004) TCGA-85-8351-01 1 249119113 249119113 G A SH3BP5L Missense_Mutation p.P8S 0.11 tolerated_low_confidence(0.24) benign(0) TCGA-85-8351-01 1 36752354 36752354 A - THRAP3 Frame_Shift_Del p.K175Sfs*68 0.22 TCGA-85-8351-01 1 43778951 43778951 G C TIE1 Silent p.L691L 0.53 TCGA-85-8351-01 1 46501214 46501214 C G MAST2 Missense_Mutation p.Q1625E 0.25 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-85-8351-01 1 77620125 77620125 G C PIGK Intron 0.21 TCGA-85-8351-01 20 1600642 1600642 G A SIRPB1 5'UTR 0.57 TCGA-85-8351-01 20 18163808 18163808 C T CSRP2BP Missense_Mutation p.S617L 0.14 tolerated(0.23) benign(0.006) TCGA-85-8351-01 20 30818663 30818663 G T POFUT1 Silent p.S259S 0.27 TCGA-85-8351-01 20 33565808 33565808 C T MYH7B Silent p.A42A 0.38 TCGA-85-8351-01 20 34099321 34099321 G T CEP250 Missense_Mutation p.A2399S 0.28 probably_damaging(0.999) TCGA-85-8351-01 20 34242506 34242506 A C RBM12 Missense_Mutation p.L247V 0.04 tolerated(0.17) unknown(0) TCGA-85-8351-01 20 35219753 35219753 G A TGIF2 Silent p.E211E 0.32 TCGA-85-8351-01 20 42204950 42204950 C T SGK2 Silent p.A320A 0.10 TCGA-85-8351-01 20 8609036 8609036 C A PLCB1 Silent p.I114I 0.19 TCGA-85-8351-01 21 15013807 15013807 G T POTED Nonsense_Mutation p.E559* 0.17 TCGA-85-8351-01 21 40800400 40800400 G C LCA5L Missense_Mutation p.T7R 0.08 deleterious(0) probably_damaging(0.964) TCGA-85-8351-01 22 16287700 16287700 G T POTEH Silent p.G62G 0.14 TCGA-85-8351-01 22 19751805 19751805 G A TBX1 Missense_Mutation p.D214N 0.24 deleterious(0) probably_damaging(0.998) TCGA-85-8351-01 22 24629501 24629501 A G GGT5 Missense_Mutation p.L122P 0.21 deleterious(0.01) probably_damaging(0.993) TCGA-85-8351-01 22 29886023 29886023 G T NEFH Missense_Mutation p.K798N 0.10 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-85-8351-01 2 170093743 170093743 G C LRP2 Missense_Mutation p.R1521G 0.53 benign(0.275) TCGA-85-8351-01 2 179604963 179604963 C T TTN Missense_Mutation p.A4333T 0.05 TCGA-85-8351-01 2 203682215 203682215 C G ICA1L Missense_Mutation p.D204H 0.09 deleterious(0) probably_damaging(1) TCGA-85-8351-01 2 204055062 204055062 T A NBEAL1 Missense_Mutation p.L2262I 0.33 deleterious(0) possibly_damaging(0.841) TCGA-85-8351-01 2 39249924 39249924 T C SOS1 Missense_Mutation p.T549A 0.61 tolerated(0.08) benign(0.003) TCGA-85-8351-01 2 45169953 45169953 G A SIX3 Missense_Mutation p.R237H 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-85-8351-01 2 54135672 54135672 G A PSME4 Missense_Mutation p.T887I 0.04 tolerated(0.11) benign(0.102) TCGA-85-8351-01 2 89513109 89513109 G T IGKV1-27 Silent p.G50G 0.50 TCGA-85-8351-01 3 115529185 115529185 G C LSAMP Silent p.L332L 0.11 TCGA-85-8351-01 3 124210175 124210175 A G KALRN Silent p.S1529S 0.33 TCGA-85-8351-01 3 130889640 130889640 G T NEK11 Missense_Mutation p.E436D 0.24 tolerated(0.18) benign(0.02) TCGA-85-8351-01 3 142751759 142751759 T C U2SURP Missense_Mutation p.S582P 0.33 deleterious(0.01) probably_damaging(0.947) TCGA-85-8351-01 3 147128525 147128525 G T ZIC1 Missense_Mutation p.G209V 0.17 deleterious(0) probably_damaging(0.968) TCGA-85-8351-01 3 151046085 151046085 C A P2RY13 Silent p.L253L 0.05 TCGA-85-8351-01 3 173998709 173998709 C A NLGN1 Silent p.A696A 0.43 TCGA-85-8351-01 3 178916845 178916845 G T PIK3CA Nonsense_Mutation p.E78* 0.10 TCGA-85-8351-01 3 180327836 180327836 C G TTC14 Missense_Mutation p.Q607E 0.21 tolerated_low_confidence(0.39) unknown(0) TCGA-85-8351-01 3 183381417 183381417 C T KLHL24 Silent p.D364D 0.08 TCGA-85-8351-01 3 185181395 185181395 T C MAP3K13 Missense_Mutation p.C446R 0.09 tolerated(0.07) benign(0.25) TCGA-85-8351-01 3 190345142 190345142 A G IL1RAP Missense_Mutation p.Y269C 0.20 deleterious(0.02) possibly_damaging(0.564) TCGA-85-8351-01 3 193151659 193151659 G A ATP13A4 Silent p.A939A 0.18 TCGA-85-8351-01 3 197678152 197678152 A G RPL35A Missense_Mutation p.K45R 0.05 deleterious(0.01) possibly_damaging(0.774) TCGA-85-8351-01 3 33194212 33194212 G A SUSD5 3'UTR 0.40 TCGA-85-8351-01 3 44488379 44488379 C A ZNF445 Silent p.P928P 0.24 TCGA-85-8351-01 3 45077151 45077151 A T CLEC3B Missense_Mutation p.D115V 0.25 deleterious(0) probably_damaging(0.962) TCGA-85-8351-01 3 47702879 47702879 T C SMARCC1 Missense_Mutation p.Q742R 0.21 deleterious(0.04) benign(0.231) TCGA-85-8351-01 3 63601200 63601200 C A SYNPR 3'UTR 0.18 TCGA-85-8351-01 4 120528130 120528130 T C PDE5A Missense_Mutation p.I159V 0.11 tolerated(0.31) benign(0.015) TCGA-85-8351-01 4 126369744 126369744 G A FAT4 Missense_Mutation p.A2525T 0.09 benign(0.045) TCGA-85-8351-01 4 144134972 144134972 G C USP38 Missense_Mutation p.D615H 0.32 deleterious(0) probably_damaging(0.982) TCGA-85-8351-01 4 155720572 155720572 C T RBM46 Nonsense_Mutation p.Q420* 0.11 TCGA-85-8351-01 4 178911710 178911710 C T LINC01098 3'UTR 0.08 TCGA-85-8351-01 4 186263183 186263183 A G SNX25 Silent p.L536L 0.47 TCGA-85-8351-01 4 187532590 187532590 G C FAT1 Nonsense_Mutation p.S3268* 0.09 TCGA-85-8351-01 4 187628734 187628734 C A FAT1 Nonsense_Mutation p.G750* 0.50 TCGA-85-8351-01 4 20487830 20487830 A - SLIT2 Frame_Shift_Del p.N183Tfs*60 0.20 TCGA-85-8351-01 4 3495183 3495183 G A DOK7 Silent p.S490S 0.28 TCGA-85-8351-01 4 39105011 39105011 A G KLHL5 Missense_Mutation p.K515E 0.33 deleterious(0.02) possibly_damaging(0.734) TCGA-85-8351-01 4 435870 435870 A T ZNF721 Missense_Mutation p.F796I 0.08 deleterious(0) benign(0.216) TCGA-85-8351-01 4 71275746 71275746 C A PROL1 Missense_Mutation p.P234Q 0.04 tolerated_low_confidence(0.06) unknown(0) TCGA-85-8351-01 4 74017224 74017224 G A ANKRD17 Nonsense_Mutation p.R418* 0.22 TCGA-85-8351-01 5 140262260 140262260 G C PCDHA13 Missense_Mutation p.S136T 0.49 tolerated_low_confidence(1) benign(0.003) TCGA-85-8351-01 5 14498646 14498646 G C TRIO Silent p.T2743T 0.20 TCGA-85-8351-01 5 23522956 23522956 G A PRDM9 Missense_Mutation p.E282K 0.14 deleterious(0) benign(0.009) TCGA-85-8351-01 5 5457828 5457828 G T KIAA0947 Missense_Mutation p.G359C 0.27 deleterious(0.01) possibly_damaging(0.745) TCGA-85-8351-01 5 59943265 59943265 C A DEPDC1B Missense_Mutation p.G137V 0.47 tolerated(0.34) benign(0.027) TCGA-85-8351-01 5 71015787 71015787 C T CARTPT Silent p.P80P 0.13 TCGA-85-8351-01 5 78423623 78423623 C T BHMT Missense_Mutation p.A285V 0.38 deleterious(0.01) benign(0.034) TCGA-85-8351-01 6 105609416 105609416 C T POPDC3 Silent p.L123L 0.63 TCGA-85-8351-01 6 105845754 105845754 C G PREP Missense_Mutation p.E32Q 0.12 deleterious(0) probably_damaging(0.997) TCGA-85-8351-01 6 130761828 130761828 A T TMEM200A Missense_Mutation p.K87N 0.07 tolerated(0.23) benign(0.258) TCGA-85-8351-01 6 152614779 152614779 G C SYNE1 Missense_Mutation p.L5986V 0.14 probably_damaging(0.996) TCGA-85-8351-01 6 26056330 26056330 C T HIST1H1C Silent p.K109K 0.06 TCGA-85-8351-01 6 27216667 27216667 A C PRSS16 Silent p.G93G 0.36 TCGA-85-8351-01 6 2892078 2892078 C G SERPINB9 Missense_Mutation p.E238Q 0.16 deleterious(0.02) benign(0.356) TCGA-85-8351-01 6 29274845 29274845 C T OR14J1 Missense_Mutation p.P127S 0.40 deleterious(0) probably_damaging(1) TCGA-85-8351-01 6 30658716 30658716 G C NRM Silent p.L12L 0.22 TCGA-85-8351-01 6 72970409 72970409 G T RIMS1 Nonsense_Mutation p.E1019* 0.12 TCGA-85-8351-01 6 88854606 88854606 T C CNR1 Missense_Mutation p.T130A 0.27 tolerated(0.05) probably_damaging(0.993) TCGA-85-8351-01 7 100000180 100000180 C T ZCWPW1 Missense_Mutation p.R477H 0.17 deleterious(0) benign(0.243) TCGA-85-8351-01 7 100676943 100676943 T C MUC17 Missense_Mutation p.L749S 0.18 probably_damaging(0.993) TCGA-85-8351-01 7 123143001 123143001 C T IQUB Silent p.T288T 0.22 TCGA-85-8351-01 7 143771517 143771517 G A OR2A25 Missense_Mutation p.D69N 0.12 deleterious(0.01) probably_damaging(1) TCGA-85-8351-01 7 144288616 144288616 T A TPK1 Missense_Mutation p.Q134L 0.20 deleterious(0) probably_damaging(0.977) TCGA-85-8351-01 7 44120501 44120501 T A POLM Missense_Mutation p.H68L 0.36 deleterious(0) probably_damaging(0.999) TCGA-85-8351-01 8 103291080 103291080 C T UBR5 Missense_Mutation p.V2088I 0.10 tolerated(0.5) benign(0.004) TCGA-85-8351-01 8 144240312 144240312 G A LY6H Missense_Mutation p.T53I 0.17 tolerated(0.08) probably_damaging(0.994) TCGA-85-8351-01 8 144999790 144999790 T C PLEC Missense_Mutation p.K1573R 0.44 unknown(0) TCGA-85-8351-01 8 15978005 15978005 G A MSR1 Missense_Mutation p.R382C 0.05 deleterious(0) probably_damaging(0.964) TCGA-85-8351-01 8 17941578 17941578 G C ASAH1 Intron 0.15 TCGA-85-8351-01 8 68965339 68965339 C T PREX2 Silent p.F317F 0.07 TCGA-85-8351-01 9 116175912 116175912 C A C9orf43 Missense_Mutation p.L47M 0.39 tolerated(0.09) benign(0.371) TCGA-85-8351-01 X 105153108 105153108 A C NRK Missense_Mutation p.Q493P 0.18 tolerated(0.08) benign(0.003) TCGA-85-8351-01 X 73046401 73046401 G A XIST RNA 0.63 TCGA-85-8351-01 X 76937559 76937559 A G ATRX Silent p.Y1063Y 0.64 TCGA-85-8352-01 10 102740590 102740590 T C SEMA4G Silent p.Y493Y 0.63 TCGA-85-8352-01 10 114170351 114170351 C T ACSL5 Missense_Mutation p.P308S 0.19 deleterious(0.01) probably_damaging(1) TCGA-85-8352-01 10 117026362 117026362 G T ATRNL1 Nonsense_Mutation p.E621* 0.33 TCGA-85-8352-01 10 13698942 13698942 A C FRMD4A Missense_Mutation p.W883G 0.14 tolerated(0.22) probably_damaging(0.986) TCGA-85-8352-01 10 16806387 16806387 A TC RSU1 Splice_Site p.X94_splice 0.21 TCGA-85-8352-01 10 18807331 18807331 C T CACNB2 Silent p.L291L 0.46 TCGA-85-8352-01 10 21074756 21074756 C A NEBL Missense_Mutation p.D989Y 0.59 deleterious(0) probably_damaging(0.997) TCGA-85-8352-01 10 31816067 31816067 G T ZEB1 Nonsense_Mutation p.G1085* 0.32 TCGA-85-8352-01 10 37422873 37422873 G T ANKRD30A Missense_Mutation p.G160V 0.41 deleterious(0.01) possibly_damaging(0.575) TCGA-85-8352-01 10 53921696 53921696 C A PRKG1 Missense_Mutation p.A350E 0.25 tolerated(1) benign(0.016) TCGA-85-8352-01 10 5416155 5416155 G C UCN3 Missense_Mutation p.G158R 0.34 deleterious(0) probably_damaging(0.979) TCGA-85-8352-01 10 72360304 72360304 G T PRF1 Silent p.R119R 0.26 TCGA-85-8352-01 10 73563147 73563147 A T CDH23 Silent p.P374P 0.17 TCGA-85-8352-01 10 74692356 74692356 G A OIT3 3'UTR 0.47 TCGA-85-8352-01 10 81065950 81065952 CAT - ZMIZ1 In_Frame_Del p.I840del 0.19 TCGA-85-8352-01 11 1094728 1094728 C A MUC2 Missense_Mutation p.T1939K 0.97 unknown(0) TCGA-85-8352-01 11 31616396 31616396 C G ELP4 Missense_Mutation p.S154C 0.97 tolerated(0.08) benign(0.033) TCGA-85-8352-01 11 49831732 49831732 C A RP11-707M1.1 RNA 0.91 TCGA-85-8352-01 11 5080001 5080001 G C OR52E2 Missense_Mutation p.P286R 0.95 deleterious(0) probably_damaging(0.999) TCGA-85-8352-01 11 5410655 5410655 T A OR51M1 Silent p.P9P 0.91 TCGA-85-8352-01 11 58604588 58604588 C A GLYATL2 Missense_Mutation p.D126Y 0.93 deleterious(0) probably_damaging(0.999) TCGA-85-8352-01 11 67397306 67397306 C A NUDT8 Missense_Mutation p.R26L 0.76 deleterious(0.02) possibly_damaging(0.891) TCGA-85-8352-01 11 68029690 68029690 C T C11orf24 Missense_Mutation p.S258N 0.87 deleterious(0.04) benign(0.096) TCGA-85-8352-01 11 93170851 93170851 A G CCDC67 Missense_Mutation p.K594R 0.93 tolerated(0.22) probably_damaging(0.999) TCGA-85-8352-01 12 10541425 10541425 G T KLRK1 5'UTR 0.70 TCGA-85-8352-01 12 113344916 113344916 G T OAS1 Silent p.T24T 0.26 TCGA-85-8352-01 12 113440864 113440864 A G OAS2 Missense_Mutation p.E379G 0.65 deleterious(0) probably_damaging(0.917) TCGA-85-8352-01 12 120589045 120589045 C T GCN1L1 Missense_Mutation p.V1405M 0.52 probably_damaging(0.981) TCGA-85-8352-01 12 130832663 130832663 G T PIWIL1 Missense_Mutation p.M223I 0.33 tolerated(0.07) benign(0.164) TCGA-85-8352-01 12 15742465 15742465 G A PTPRO Missense_Mutation p.D1163N 0.12 deleterious(0.02) probably_damaging(1) TCGA-85-8352-01 12 1755336 1755336 G C WNT5B Missense_Mutation p.R333P 0.38 deleterious(0) probably_damaging(0.999) TCGA-85-8352-01 12 22659675 22659675 C A C2CD5 Missense_Mutation p.V373L 0.61 deleterious(0) probably_damaging(0.997) TCGA-85-8352-01 12 25672998 25672998 C - IFLTD1 Frame_Shift_Del p.W270Cfs*14 0.48 TCGA-85-8352-01 12 30815422 30815422 C T IPO8 Splice_Site p.X532_splice 0.43 TCGA-85-8352-01 12 45568044 45568044 C A PLEKHA8P1 RNA 0.59 TCGA-85-8352-01 12 51748233 51748233 G C GALNT6 Missense_Mutation p.S600C 0.57 deleterious(0) possibly_damaging(0.612) TCGA-85-8352-01 12 51888803 51888803 G A SLC4A8 Silent p.P948P 0.34 TCGA-85-8352-01 12 53586165 53586165 C G ITGB7 Missense_Mutation p.V702L 0.30 tolerated(0.3) benign(0.039) TCGA-85-8352-01 12 55688352 55688352 G A OR6C6 Missense_Mutation p.T222I 0.61 deleterious_low_confidence(0.02) benign(0.247) TCGA-85-8352-01 12 62888928 62888928 G C MON2 Splice_Site p.X145_splice 0.35 TCGA-85-8352-01 12 67703974 67703974 G C CAND1 Missense_Mutation p.D1080H 0.26 deleterious(0) probably_damaging(1) TCGA-85-8352-01 12 69742180 69742180 G T LYZ 5'UTR 0.29 TCGA-85-8352-01 12 78444820 78444820 G A NAV3 Silent p.E803E 0.52 TCGA-85-8352-01 12 78583982 78583982 G T NAV3 Missense_Mutation p.D2070Y 0.41 deleterious(0) probably_damaging(0.952) TCGA-85-8352-01 13 100618011 100618011 G A ZIC5 Missense_Mutation p.R538W 0.18 deleterious(0) probably_damaging(0.999) TCGA-85-8352-01 13 100635332 100635332 G T ZIC2 Silent p.P338P 0.93 TCGA-85-8352-01 13 25066730 25066730 C A PARP4 Silent p.V294V 0.93 TCGA-85-8352-01 13 35864580 35864580 G T NBEA Missense_Mutation p.C1944F 0.98 deleterious(0) probably_damaging(0.998) TCGA-85-8352-01 13 92560267 92560267 C A GPC5 Missense_Mutation p.P453T 0.92 deleterious(0) probably_damaging(0.933) TCGA-85-8352-01 13 97639002 97639002 A T OXGR1 Nonstop_Mutation p.*338Rext*6 0.97 TCGA-85-8352-01 14 20344723 20344723 C A OR4K2 Silent p.T99T 0.25 TCGA-85-8352-01 14 20502632 20502632 C A OR4K13 Nonsense_Mutation p.G96* 0.48 TCGA-85-8352-01 14 20711627 20711627 G T OR11H4 Missense_Mutation p.R226L 0.42 tolerated(0.06) benign(0.006) TCGA-85-8352-01 14 21829333 21829334 - T SUPT16H Frame_Shift_Ins p.T612Dfs*15 0.30 TCGA-85-8352-01 14 22465917 22465917 G T TRAV17 5'UTR 0.46 TCGA-85-8352-01 14 23586847 23586847 G A CEBPE Missense_Mutation p.T232M 0.37 deleterious(0) probably_damaging(0.998) TCGA-85-8352-01 14 23862607 23862607 C G MYH6 Missense_Mutation p.D1017H 0.57 deleterious(0) probably_damaging(0.977) TCGA-85-8352-01 14 24836466 24836466 G A NFATC4 Intron 0.53 TCGA-85-8352-01 14 34985549 34985549 A G EAPP Silent p.F275F 0.45 TCGA-85-8352-01 14 38061249 38061249 T C FOXA1 Missense_Mutation p.H247R 0.56 deleterious(0) probably_damaging(1) TCGA-85-8352-01 14 42361105 42361105 A T LRFN5 Missense_Mutation p.S680C 0.43 tolerated_low_confidence(0.08) benign(0.125) TCGA-85-8352-01 14 45433658 45433658 G T FAM179B Missense_Mutation p.K678N 0.74 tolerated(0.08) possibly_damaging(0.885) TCGA-85-8352-01 14 50159991 50159991 G A KLHDC1 Missense_Mutation p.V27M 0.51 deleterious(0) possibly_damaging(0.49) TCGA-85-8352-01 14 70925744 70925752 CATGACCAG - ADAM21 In_Frame_Del p.D511_H513del 0.24 TCGA-85-8352-01 14 92413558 92413558 T G FBLN5 Silent p.R6R 0.39 TCGA-85-8352-01 14 96730450 96730450 C T BDKRB1 Missense_Mutation p.A144V 0.55 tolerated(0.2) benign(0.063) TCGA-85-8352-01 15 23931492 23931492 G T NDN Silent p.P291P 0.88 TCGA-85-8352-01 15 23931493 23931493 G T NDN Missense_Mutation p.P291H 0.88 deleterious(0) probably_damaging(0.999) TCGA-85-8352-01 15 40662276 40662276 T A DISP2 Missense_Mutation p.D1321E 0.83 tolerated(0.27) benign(0.011) TCGA-85-8352-01 15 40943668 40943668 G C CASC5 Splice_Site p.X2097_splice 0.68 TCGA-85-8352-01 15 42807496 42807496 G C SNAP23 Missense_Mutation p.E70D 0.64 deleterious(0.02) benign(0.033) TCGA-85-8352-01 15 58471377 58471377 C T AQP9 Silent p.S182S 0.69 TCGA-85-8352-01 15 63000927 63000927 G C TLN2 Missense_Mutation p.R800P 0.34 tolerated(0.08) benign(0.128) TCGA-85-8352-01 15 90246269 90246269 G A WDR93 Missense_Mutation p.S131N 0.24 tolerated(0.99) benign(0) TCGA-85-8352-01 15 92988107 92988107 G T ST8SIA2 Missense_Mutation p.V264F 0.21 possibly_damaging(0.519) TCGA-85-8352-01 16 2100413 2100413 G T TSC2 Nonsense_Mutation p.E51* 0.94 TCGA-85-8352-01 16 61687961 61687961 G T CDH8 Missense_Mutation p.P651T 0.90 tolerated(0.07) probably_damaging(0.999) TCGA-85-8352-01 16 70732687 70732687 C T VAC14 Silent p.E563E 0.88 TCGA-85-8352-01 17 11882053 11882053 G A ZNF18 Nonsense_Mutation p.Q291* 0.32 TCGA-85-8352-01 17 18923829 18923829 G A SLC5A10 3'UTR 0.91 TCGA-85-8352-01 17 20916236 20916236 C T USP22 Missense_Mutation p.G284E 0.31 tolerated(0.17) benign(0.111) TCGA-85-8352-01 17 21826325 21826325 C T FAM27L RNA 0.54 TCGA-85-8352-01 17 2227841 2227841 C T TSR1 Silent p.L731L 0.64 TCGA-85-8352-01 17 29677251 29677251 A T NF1 Nonsense_Mutation p.R2458* 0.92 TCGA-85-8352-01 17 29858885 29858885 G T RAB11FIP4 3'UTR 0.89 TCGA-85-8352-01 17 41020576 41020576 C A AOC4P RNA 0.88 TCGA-85-8352-01 17 60484413 60484413 C T EFCAB3 Missense_Mutation p.P288L 0.96 deleterious(0) probably_damaging(0.988) TCGA-85-8352-01 17 60637391 60637391 G C TLK2 Missense_Mutation p.L245F 0.54 deleterious(0.03) probably_damaging(0.935) TCGA-85-8352-01 17 60637400 60637400 G C TLK2 Missense_Mutation p.Q248H 0.54 deleterious(0) probably_damaging(0.976) TCGA-85-8352-01 17 64026130 64026130 G C CEP112 Missense_Mutation p.I410M 0.46 tolerated(0.14) possibly_damaging(0.554) TCGA-85-8352-01 17 73235523 73235523 G C GGA3 Silent p.G571G 0.97 TCGA-85-8352-01 17 7578291 7578291 T A TP53 Splice_Site p.X187_splice 0.97 TCGA-85-8352-01 17 7804681 7804681 C T CHD3 Silent p.L1139L 0.97 TCGA-85-8352-01 17 78704429 78704429 G T RPTOR Missense_Mutation p.V193F 0.97 deleterious(0) probably_damaging(0.999) TCGA-85-8352-01 18 192857 192857 G A USP14 Silent p.L140L 0.62 TCGA-85-8352-01 18 2772366 2772366 G A SMCHD1 Missense_Mutation p.G1724E 0.58 deleterious(0.04) probably_damaging(1) TCGA-85-8352-01 18 28737486 28737486 G T DSC1 Missense_Mutation p.P67T 0.56 deleterious(0) possibly_damaging(0.661) TCGA-85-8352-01 18 28737487 28737487 G T DSC1 Missense_Mutation p.D66E 0.55 deleterious(0) possibly_damaging(0.527) TCGA-85-8352-01 18 29206258 29206258 T C B4GALT6 Missense_Mutation p.Q330R 0.27 deleterious(0.01) benign(0.053) TCGA-85-8352-01 18 47463679 47463679 A T MYO5B Missense_Mutation p.V614D 0.92 deleterious(0.01) possibly_damaging(0.87) TCGA-85-8352-01 18 5416080 5416080 C G EPB41L3 Missense_Mutation p.D602H 0.66 deleterious(0) possibly_damaging(0.841) TCGA-85-8352-01 18 6986193 6986193 C G LAMA1 Missense_Mutation p.K1774N 0.32 tolerated(0.28) benign(0.02) TCGA-85-8352-01 19 11123694 11123694 G T SMARCA4 Missense_Mutation p.G782C 0.94 probably_damaging(0.999) TCGA-85-8352-01 19 12694315 12694315 A T ZNF490 Nonsense_Mutation p.L73* 0.38 TCGA-85-8352-01 19 2115341 2115341 C A AP3D1 Missense_Mutation p.R742S 0.90 tolerated(0.25) benign(0.01) TCGA-85-8352-01 19 21720680 21720680 A T ZNF429 Missense_Mutation p.T609S 0.85 tolerated(0.35) benign(0.026) TCGA-85-8352-01 19 22952018 22952018 T A ZNF99 Nonsense_Mutation p.R38* 0.93 TCGA-85-8352-01 19 35251312 35251312 C A ZNF599 Nonsense_Mutation p.E132* 0.27 TCGA-85-8352-01 19 36388627 36388627 C T NFKBID 5'UTR 0.27 TCGA-85-8352-01 19 38959742 38959742 G T RYR1 Missense_Mutation p.G1173V 0.22 probably_damaging(0.971) TCGA-85-8352-01 19 4047800 4047800 C A ZBTB7A Missense_Mutation p.G569C 0.69 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-85-8352-01 19 41038677 41038677 G T SPTBN4 Missense_Mutation p.R1365L 0.38 deleterious(0.01) benign(0.236) TCGA-85-8352-01 19 41268964 41268964 G T SNRPA Missense_Mutation p.M195I 0.35 tolerated(0.45) benign(0) TCGA-85-8352-01 19 42083749 42083749 G A CEACAM21 Missense_Mutation p.V88I 0.59 tolerated(0.42) benign(0.058) TCGA-85-8352-01 19 44832417 44832417 G C ZNF112 Missense_Mutation p.F637L 0.30 deleterious(0.01) possibly_damaging(0.522) TCGA-85-8352-01 19 46807317 46807317 C T HIF3A Silent p.Y63Y 0.70 TCGA-85-8352-01 19 47912391 47912391 T C MEIS3 Missense_Mutation p.N275D 0.61 deleterious(0.01) possibly_damaging(0.86) TCGA-85-8352-01 19 48339499 48339499 G A CRX Splice_Site p.X34_splice 0.34 TCGA-85-8352-01 19 49949922 49949922 G A PIH1D1 Silent p.I239I 0.55 TCGA-85-8352-01 19 50831754 50831754 C A KCNC3 Nonsense_Mutation p.E196* 0.25 TCGA-85-8352-01 19 50865289 50865289 C G NAPSA Missense_Mutation p.D96H 0.50 deleterious(0.01) probably_damaging(1) TCGA-85-8352-01 19 51015733 51015733 A C ASPDH Silent p.P179P 0.40 TCGA-85-8352-01 19 52149693 52149693 T G SIGLEC14 Silent p.R80R 0.36 TCGA-85-8352-01 19 53668814 53668814 C A ZNF665 Missense_Mutation p.R310I 0.64 deleterious(0.04) possibly_damaging(0.649) TCGA-85-8352-01 19 53762451 53762451 G C VN1R2 Missense_Mutation p.G275R 0.28 deleterious(0.04) probably_damaging(0.921) TCGA-85-8352-01 19 54515551 54515551 T C CACNG6 3'UTR 0.77 TCGA-85-8352-01 19 547415 547415 C T GZMM Missense_Mutation p.A64V 0.91 deleterious(0.02) possibly_damaging(0.72) TCGA-85-8352-01 19 55452328 55452328 G A NLRP7 Missense_Mutation p.A108V 0.56 tolerated(0.34) benign(0.003) TCGA-85-8352-01 19 55494392 55494392 G T NLRP2 Missense_Mutation p.Q442H 0.25 tolerated(0.31) benign(0.002) TCGA-85-8352-01 19 55716850 55716850 C G PTPRH Missense_Mutation p.E155Q 0.68 unknown(0) TCGA-85-8352-01 19 55853343 55853343 G C SUV420H2 Missense_Mutation p.E13D 0.56 tolerated(0.09) probably_damaging(0.975) TCGA-85-8352-01 19 55995525 55995525 A T ZNF628 Missense_Mutation p.S989C 0.23 deleterious_low_confidence(0.05) unknown(0) TCGA-85-8352-01 19 56465916 56465916 A G NLRP8 Missense_Mutation p.I164M 0.34 tolerated(0.57) benign(0.004) TCGA-85-8352-01 19 5745998 5745998 C A CATSPERD Missense_Mutation p.D244E 0.61 tolerated(0.4) benign(0.097) TCGA-85-8352-01 19 58216302 58216302 C A ZNF154 Nonsense_Mutation p.E27* 0.67 TCGA-85-8352-01 19 6364621 6364621 A G CLPP Missense_Mutation p.M176V 0.68 deleterious(0) probably_damaging(0.987) TCGA-85-8352-01 19 7833878 7833878 T C CLEC4M 3'UTR 0.32 TCGA-85-8352-01 19 8180415 8180415 C A FBN3 Silent p.G1274G 0.54 TCGA-85-8352-01 19 886136 886136 G A MED16 Silent p.F171F 0.15 TCGA-85-8352-01 19 9046488 9046488 C T MUC16 Missense_Mutation p.A11715T 0.53 benign(0.096) TCGA-85-8352-01 19 9060094 9060094 G C MUC16 Missense_Mutation p.Q9118E 0.61 unknown(0) TCGA-85-8352-01 19 9529292 9529292 C G ZNF266 5'UTR 0.28 TCGA-85-8352-01 1 111857209 111857209 G T CHIA Missense_Mutation p.G102V 0.34 deleterious(0.01) probably_damaging(1) TCGA-85-8352-01 1 11574456 11574456 G T PTCHD2 Missense_Mutation p.Q442H 0.40 deleterious(0.02) probably_damaging(0.966) TCGA-85-8352-01 1 118534100 118534100 C T SPAG17 Missense_Mutation p.V1805I 0.63 tolerated(0.29) benign(0.05) TCGA-85-8352-01 1 120285569 120285569 G A PHGDH Missense_Mutation p.G450E 0.15 tolerated(0.1) benign(0.282) TCGA-85-8352-01 1 145209187 145209187 A G RP11-458D21.5 5'UTR 0.10 TCGA-85-8352-01 1 156639616 156639616 C A NES Missense_Mutation p.G1455V 0.53 deleterious(0) probably_damaging(0.911) TCGA-85-8352-01 1 156639617 156639617 C A NES Missense_Mutation p.G1455W 0.52 deleterious(0) probably_damaging(0.997) TCGA-85-8352-01 1 158747280 158747280 A G OR6N2 Missense_Mutation p.I49T 0.43 tolerated(0.05) benign(0.018) TCGA-85-8352-01 1 159170799 159170799 C A CADM3 3'UTR 0.52 TCGA-85-8352-01 1 161022124 161022124 G A ARHGAP30 Missense_Mutation p.P324S 0.21 tolerated(0.18) possibly_damaging(0.638) TCGA-85-8352-01 1 161954679 161954679 C A OLFML2B Silent p.L522L 0.57 TCGA-85-8352-01 1 16945397 16945397 C A RP5-1182A14.5 3'Flank 0.14 TCGA-85-8352-01 1 17326957 17326957 C T ATP13A2 Missense_Mutation p.A260T 0.45 deleterious(0) possibly_damaging(0.797) TCGA-85-8352-01 1 17349218 17349218 C T SDHB Missense_Mutation p.R217H 0.52 deleterious(0) probably_damaging(1) TCGA-85-8352-01 1 173842616 173842616 C G ZBTB37 Missense_Mutation p.S312C 0.14 deleterious(0.01) possibly_damaging(0.88) TCGA-85-8352-01 1 17570701 17570701 A G PADI1 Missense_Mutation p.K652R 0.29 tolerated(0.16) benign(0.052) TCGA-85-8352-01 1 180135674 180135674 C G QSOX1 Missense_Mutation p.T105S 0.52 tolerated(0.43) benign(0.05) TCGA-85-8352-01 1 182636031 182636031 G - RGS8 Frame_Shift_Del p.P53Qfs*40 0.29 TCGA-85-8352-01 1 196706116 196706116 A T CFH Missense_Mutation p.Q859L 0.38 deleterious(0.01) probably_damaging(0.957) TCGA-85-8352-01 1 196973871 196973871 G C CFHR5 Missense_Mutation p.G471R 0.56 deleterious(0) probably_damaging(0.984) TCGA-85-8352-01 1 204172067 204172067 C - GOLT1A Frame_Shift_Del p.G25Efs*19 0.36 TCGA-85-8352-01 1 206821911 206821911 C T DYRK3 Silent p.T456T 0.55 TCGA-85-8352-01 1 2075774 2075774 G T PRKCZ Missense_Mutation p.K182N 0.44 tolerated(0.23) benign(0.002) TCGA-85-8352-01 1 216246236 216246236 C A USH2A Missense_Mutation p.G1951V 0.32 possibly_damaging(0.558) TCGA-85-8352-01 1 23520622 23520622 G A HTR1D Missense_Mutation p.P31S 0.39 tolerated(0.48) benign(0.05) TCGA-85-8352-01 1 240256873 240256873 G T FMN2 Missense_Mutation p.E488D 0.36 unknown(0) TCGA-85-8352-01 1 245850769 245850769 G C KIF26B Missense_Mutation p.G1495A 0.24 deleterious(0.02) unknown(0) TCGA-85-8352-01 1 247319915 247319915 T C ZNF124 Missense_Mutation p.K275E 0.27 tolerated(1) benign(0.008) TCGA-85-8352-01 1 248366729 248366729 T C OR2M3 Silent p.Y120Y 0.57 TCGA-85-8352-01 1 248685739 248685739 T C OR2G6 Silent p.N264N 0.61 TCGA-85-8352-01 1 34164467 34164467 C A CSMD2 Missense_Mutation p.G1231W 0.53 deleterious(0) probably_damaging(0.994) TCGA-85-8352-01 1 34166246 34166246 G - CSMD2 Frame_Shift_Del p.R1162Vfs*11 0.28 TCGA-85-8352-01 1 36282512 36282512 C T AGO4 Missense_Mutation p.R17C 0.54 tolerated(0.06) possibly_damaging(0.776) TCGA-85-8352-01 1 38226987 38226987 A T EPHA10 Intron 0.40 TCGA-85-8352-01 1 52863354 52863354 T C ORC1 Intron 0.46 TCGA-85-8352-01 1 74663869 74663869 G A LRRIQ3 5'UTR 0.36 TCGA-85-8352-01 1 77763593 77763593 T G AK5 Missense_Mutation p.F220L 0.39 deleterious(0) probably_damaging(0.999) TCGA-85-8352-01 1 87189998 87189998 A T SH3GLB1 Missense_Mutation p.K160N 0.65 deleterious(0.05) possibly_damaging(0.543) TCGA-85-8352-01 1 874782 874782 C A SAMD11 Silent p.L216L 0.40 TCGA-85-8352-01 1 95356768 95356768 C G SLC44A3 Nonsense_Mutation p.S522* 0.35 TCGA-85-8352-01 20 20033184 20033184 C A CRNKL1 Missense_Mutation p.A96S 0.16 deleterious_low_confidence(0) benign(0.024) TCGA-85-8352-01 20 37524240 37524240 G A PPP1R16B Silent p.K118K 0.51 TCGA-85-8352-01 20 43926612 43926612 C T MATN4 Missense_Mutation p.D509N 0.24 possibly_damaging(0.894) TCGA-85-8352-01 20 47852961 47852961 C T DDX27 Missense_Mutation p.S565F 0.24 deleterious(0) probably_damaging(0.984) TCGA-85-8352-01 20 60791174 60791174 G A HRH3 Missense_Mutation p.P409L 0.96 deleterious(0) probably_damaging(1) TCGA-85-8352-01 20 62200184 62200184 C G HELZ2 Silent p.L419L 0.91 TCGA-85-8352-01 20 742393 742393 C G SLC52A3 Missense_Mutation p.M383I 0.69 tolerated(0.05) possibly_damaging(0.589) TCGA-85-8352-01 21 30339357 30339357 C G LTN1 Missense_Mutation p.V532L 0.94 tolerated(1) benign(0.006) TCGA-85-8352-01 21 46323445 46323445 C A ITGB2 Missense_Mutation p.A112S 0.93 deleterious(0.05) possibly_damaging(0.491) TCGA-85-8352-01 22 20131128 20131128 C A ZDHHC8 Silent p.R659R 0.52 TCGA-85-8352-01 22 26176074 26176074 C A MYO18B Missense_Mutation p.S707Y 0.33 deleterious(0.05) possibly_damaging(0.747) TCGA-85-8352-01 22 26776326 26776326 G C SEZ6L 3'UTR 0.59 TCGA-85-8352-01 22 32015765 32015765 C G PISD Missense_Mutation p.V321L 0.27 tolerated(0.48) benign(0.005) TCGA-85-8352-01 22 38055321 38055321 C T PDXP Missense_Mutation p.R178C 0.28 tolerated(0.12) benign(0.014) TCGA-85-8352-01 22 39812823 39812823 C T TAB1 Silent p.L118L 0.22 TCGA-85-8352-01 22 43606191 43606191 G T SCUBE1 Missense_Mutation p.N813K 0.27 deleterious(0) probably_damaging(0.999) TCGA-85-8352-01 2 128890813 128890813 C G UGGT1 Missense_Mutation p.I492M 0.31 deleterious(0) probably_damaging(0.999) TCGA-85-8352-01 2 141359088 141359088 T G LRP1B Missense_Mutation p.D2307A 0.36 possibly_damaging(0.539) TCGA-85-8352-01 2 152695630 152695630 G A CACNB4 3'UTR 0.36 TCGA-85-8352-01 2 182347332 182347332 C T ITGA4 Missense_Mutation p.T332I 0.34 tolerated(0.2) benign(0.012) TCGA-85-8352-01 2 1843046 1843046 C - MYT1L Frame_Shift_Del p.D985Tfs*4 0.51 TCGA-85-8352-01 2 198949100 198949100 A T PLCL1 Missense_Mutation p.I287F 0.33 tolerated(0.09) possibly_damaging(0.694) TCGA-85-8352-01 2 202719661 202719661 G C CDK15 Splice_Site p.X337_splice 0.37 TCGA-85-8352-01 2 207175884 207175884 A C ZDBF2 Missense_Mutation p.Q2211P 0.58 tolerated(0.12) benign(0.153) TCGA-85-8352-01 2 211503937 211503937 C A CPS1 Missense_Mutation p.Q971K 0.65 tolerated(0.53) benign(0.164) TCGA-85-8352-01 2 219868969 219868969 A G CCDC108 Missense_Mutation p.Y1754H 0.44 tolerated(0.6) benign(0.031) TCGA-85-8352-01 2 225740818 225740818 G T DOCK10 Missense_Mutation p.Q290K 0.40 deleterious(0.01) probably_damaging(0.992) TCGA-85-8352-01 2 241725780 241725780 C A KIF1A Missense_Mutation p.D194Y 0.34 deleterious(0) probably_damaging(0.982) TCGA-85-8352-01 2 27458404 27458404 A G CAD Missense_Mutation p.N1324D 0.21 tolerated(0.48) benign(0.005) TCGA-85-8352-01 2 31215800 31215800 C A GALNT14 Intron 0.94 TCGA-85-8352-01 2 44502726 44502726 T A SLC3A1 Missense_Mutation p.C18S 0.11 tolerated_low_confidence(0.51) benign(0.211) TCGA-85-8352-01 2 60780425 60780425 G A BCL11A 5'UTR 0.98 TCGA-85-8352-01 2 98428909 98428909 T G TMEM131 Missense_Mutation p.K613T 0.52 tolerated(0.19) benign(0.001) TCGA-85-8352-01 2 98451245 98451245 A G TMEM131 Silent p.V316V 0.48 TCGA-85-8352-01 3 108682451 108682451 T A MORC1 Missense_Mutation p.Q870L 1.00 deleterious_low_confidence(0.01) benign(0.164) TCGA-85-8352-01 3 114018523 114018523 C T TIGIT Silent p.V157V 0.33 TCGA-85-8352-01 3 115395439 115395439 C T GAP43 Nonsense_Mutation p.Q240* 0.12 TCGA-85-8352-01 3 119205770 119205770 A T POGLUT1 Missense_Mutation p.K243N 0.51 deleterious(0) probably_damaging(0.994) TCGA-85-8352-01 3 120121762 120121762 C A FSTL1 Missense_Mutation p.C233F 0.19 deleterious(0) probably_damaging(0.999) TCGA-85-8352-01 3 121305319 121305319 C A ARGFX Missense_Mutation p.P274T 0.27 deleterious(0.03) benign(0.1) TCGA-85-8352-01 3 137484358 137484358 C A SOX14 3'UTR 0.14 TCGA-85-8352-01 3 141678674 141678674 T C TFDP2 Missense_Mutation p.Y298C 0.45 deleterious(0.02) probably_damaging(1) TCGA-85-8352-01 3 149192710 149192710 C A TM4SF4 Missense_Mutation p.P16T 0.14 tolerated(0.08) probably_damaging(0.957) TCGA-85-8352-01 3 149192711 149192711 C A TM4SF4 Missense_Mutation p.P16H 0.15 deleterious(0.03) possibly_damaging(0.746) TCGA-85-8352-01 3 149290672 149290672 C A WWTR1 Missense_Mutation p.A183S 0.19 tolerated(0.26) benign(0.265) TCGA-85-8352-01 3 164906379 164906380 - C SLITRK3 Frame_Shift_Ins p.V747Gfs*14 0.19 TCGA-85-8352-01 3 178546162 178546162 G A KCNMB2 Splice_Site p.X141_splice 0.28 TCGA-85-8352-01 3 180397193 180397193 C A CCDC39 5'UTR 0.43 TCGA-85-8352-01 3 183516717 183516717 C G YEATS2 Missense_Mutation p.L1089V 0.19 tolerated(0.5) benign(0.012) TCGA-85-8352-01 3 183854627 183854627 C T EIF2B5 Intron 0.26 TCGA-85-8352-01 3 190347302 190347302 C T IL1RAP Intron 0.30 TCGA-85-8352-01 3 197665515 197665515 G A IQCG Missense_Mutation p.A140V 0.25 tolerated(0.32) benign(0.017) TCGA-85-8352-01 3 30686247 30686247 G A TGFBR2 Missense_Mutation p.D60N 0.43 tolerated_low_confidence(0.2) benign(0.067) TCGA-85-8352-01 3 42679414 42679414 A T NKTR Nonsense_Mutation p.R740* 0.29 TCGA-85-8352-01 3 46542223 46542223 G C RTP3 Missense_Mutation p.R178T 0.36 tolerated(0.3) probably_damaging(0.981) TCGA-85-8352-01 3 46542278 46542278 G C RTP3 Missense_Mutation p.E196D 0.27 tolerated(0.26) benign(0.025) TCGA-85-8352-01 3 95374076 95374076 C A MTHFD2P1 RNA 0.90 TCGA-85-8352-01 3 99881244 99881244 T C CMSS1 Missense_Mutation p.L108S 0.61 tolerated(1) benign(0) TCGA-85-8352-01 4 106395103 106395103 G A PPA2 Silent p.Y35Y 0.41 TCGA-85-8352-01 4 110749182 110749182 A T RRH 5'UTR 0.38 TCGA-85-8352-01 4 13338672 13338672 G A HSP90AB2P RNA 0.38 TCGA-85-8352-01 4 147561915 147561915 C G POU4F2 Missense_Mutation p.N395K 0.36 deleterious(0) probably_damaging(0.982) TCGA-85-8352-01 4 153244141 153244141 C T FBXW7 Silent p.V672V 0.32 TCGA-85-8352-01 4 156135153 156135153 A C NPY2R Missense_Mutation p.Q21P 0.41 tolerated_low_confidence(0.27) benign(0) TCGA-85-8352-01 4 156294488 156294488 G C MAP9 Missense_Mutation p.T94S 0.43 tolerated(0.23) benign(0.201) TCGA-85-8352-01 4 166924656 166924656 G T TLL1 Missense_Mutation p.W249L 0.47 deleterious(0) probably_damaging(0.989) TCGA-85-8352-01 4 166924657 166924657 G T TLL1 Missense_Mutation p.W249C 0.47 deleterious(0) probably_damaging(0.999) TCGA-85-8352-01 4 169348389 169348389 C A DDX60L Missense_Mutation p.D588Y 0.40 tolerated(0.24) possibly_damaging(0.492) TCGA-85-8352-01 4 1818519 1818519 C G LETM1 Missense_Mutation p.L622F 0.50 deleterious(0.01) possibly_damaging(0.646) TCGA-85-8352-01 4 183601696 183601696 C A TENM3 Missense_Mutation p.A547D 0.34 tolerated(0.36) possibly_damaging(0.908) TCGA-85-8352-01 4 46314646 46314646 T A GABRA2 Missense_Mutation p.N115Y 0.35 deleterious(0) probably_damaging(1) TCGA-85-8352-01 4 48591823 48591823 C A FRYL Missense_Mutation p.G527W 0.29 deleterious(0.01) probably_damaging(1) TCGA-85-8352-01 4 69696395 69696395 G A UGT2B10 Nonsense_Mutation p.W462* 0.44 TCGA-85-8352-01 4 85722958 85722958 T C WDFY3 Silent p.E889E 0.51 TCGA-85-8352-01 4 90857797 90857797 C G MMRN1 Missense_Mutation p.S989W 0.44 deleterious(0.02) possibly_damaging(0.875) TCGA-85-8352-01 4 96137243 96137243 T A UNC5C Intron 0.54 TCGA-85-8352-01 5 108281897 108281897 C T FER Missense_Mutation p.P435S 0.50 deleterious(0) probably_damaging(0.998) TCGA-85-8352-01 5 134871099 134871099 G T NEUROG1 Silent p.R94R 1.00 TCGA-85-8352-01 5 140222427 140222427 C T PCDHA8 Silent p.Y507Y 0.94 TCGA-85-8352-01 5 140229462 140229462 C A PCDHA9 Missense_Mutation p.T461K 0.94 deleterious_low_confidence(0) possibly_damaging(0.889) TCGA-85-8352-01 5 140346535 140346535 G C PCDHAC2 Missense_Mutation p.A62P 0.95 deleterious(0) probably_damaging(0.994) TCGA-85-8352-01 5 140516739 140516739 G T PCDHB5 Missense_Mutation p.V575L 0.88 tolerated_low_confidence(0.48) benign(0.139) TCGA-85-8352-01 5 145510660 145510660 T A LARS Silent p.A803A 1.00 TCGA-85-8352-01 5 16701590 16701590 C G MYO10 Missense_Mutation p.A972P 0.60 tolerated_low_confidence(0.16) benign(0.193) TCGA-85-8352-01 5 170395380 170395380 A T RANBP17 Missense_Mutation p.K570M 0.94 deleterious(0) possibly_damaging(0.87) TCGA-85-8352-01 5 170863222 170863222 C T FGF18 Silent p.H65H 0.93 TCGA-85-8352-01 5 31323353 31323353 G T CDH6 Nonsense_Mutation p.G771* 0.66 TCGA-85-8352-01 5 40959721 40959721 A T C7 Missense_Mutation p.R554W 0.22 deleterious(0) probably_damaging(0.997) TCGA-85-8352-01 5 41052645 41052645 C G MROH2B Missense_Mutation p.K384N 0.22 tolerated(0.08) probably_damaging(0.915) TCGA-85-8352-01 5 41054912 41054912 A G MROH2B Missense_Mutation p.I355T 0.15 deleterious(0) possibly_damaging(0.844) TCGA-85-8352-01 5 42804765 42804765 G T SEPP1 Missense_Mutation p.S176Y 0.21 deleterious(0.01) benign(0.111) TCGA-85-8352-01 5 65324100 65324100 A T ERBB2IP Splice_Site p.X379_splice 0.86 TCGA-85-8352-01 5 86672352 86672352 G C RASA1 Missense_Mutation p.M718I 0.83 deleterious(0.01) possibly_damaging(0.577) TCGA-85-8352-01 5 86674216 86674216 A C RASA1 Missense_Mutation p.E783A 0.97 deleterious(0) probably_damaging(0.978) TCGA-85-8352-01 5 9629659 9629659 T C TAS2R1 Silent p.Q162Q 0.29 TCGA-85-8352-01 6 136599115 136599115 C A BCLAF1 Missense_Mutation p.A302S 0.09 deleterious(0.01) possibly_damaging(0.567) TCGA-85-8352-01 6 146719977 146719977 G A GRM1 Missense_Mutation p.C601Y 0.95 deleterious(0) probably_damaging(0.947) TCGA-85-8352-01 6 153043078 153043078 G A MYCT1 Missense_Mutation p.R133H 0.30 deleterious(0) probably_damaging(0.999) TCGA-85-8352-01 6 26031919 26031919 C G HIST1H3B Missense_Mutation p.D124H 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.826) TCGA-85-8352-01 6 26204895 26204896 - A HIST1H4E Frame_Shift_Ins p.L11Tfs*3 0.52 TCGA-85-8352-01 6 49753713 49753713 G C PGK2 Silent p.G396G 0.19 TCGA-85-8352-01 6 6182336 6182336 A T F13A1 Missense_Mutation p.D448E 0.91 deleterious(0.03) benign(0.093) TCGA-85-8352-01 6 75892765 75892765 C A COL12A1 Splice_Site p.X631_splice 0.18 TCGA-85-8352-01 6 83767610 83767610 C A UBE3D Missense_Mutation p.G70V 0.98 deleterious(0.01) possibly_damaging(0.876) TCGA-85-8352-01 6 84896249 84896251 TGT - KIAA1009 In_Frame_Del p.Q400del 0.28 TCGA-85-8352-01 6 97058447 97058447 G T FHL5 Splice_Site p.X169_splice 0.97 TCGA-85-8352-01 7 100244447 100244447 G A ACTL6B Missense_Mutation p.S315L 0.13 tolerated(0.28) benign(0.022) TCGA-85-8352-01 7 103136260 103136260 G T RELN Silent p.L3093L 0.30 TCGA-85-8352-01 7 112723908 112723908 A G GPR85 Missense_Mutation p.M290T 0.55 deleterious(0.01) benign(0.056) TCGA-85-8352-01 7 114330063 114330063 T C FOXP2 3'UTR 0.49 TCGA-85-8352-01 7 117431990 117431990 C A CTTNBP2 Silent p.S420S 0.50 TCGA-85-8352-01 7 122339009 122339009 C G RNF133 5'UTR 0.48 TCGA-85-8352-01 7 134260187 134260187 G A AKR1B15 Missense_Mutation p.V177M 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-85-8352-01 7 137080372 137080372 C A DGKI Missense_Mutation p.G1018V 0.44 deleterious(0) probably_damaging(1) TCGA-85-8352-01 7 137080373 137080373 C T DGKI Missense_Mutation p.G1018R 0.45 deleterious(0) probably_damaging(1) TCGA-85-8352-01 7 138524931 138524931 C T KIAA1549 Missense_Mutation p.G1849R 0.36 deleterious(0) probably_damaging(0.939) TCGA-85-8352-01 7 150266986 150266986 G A GIMAP4 5'UTR 0.43 TCGA-85-8352-01 7 150720203 150720203 G A ATG9B Silent p.T250T 0.55 TCGA-85-8352-01 7 151927077 151927077 T C KMT2C Silent p.G969G 0.10 TCGA-85-8352-01 7 2629590 2629590 G C IQCE Missense_Mutation p.R365T 0.55 tolerated(0.33) benign(0.027) TCGA-85-8352-01 7 37780541 37780541 C T GPR141 Silent p.N182N 0.23 TCGA-85-8352-01 7 43484961 43484961 C T HECW1 Silent p.S730S 0.24 TCGA-85-8352-01 7 44578499 44578499 C T NPC1L1 Silent p.T499T 0.25 TCGA-85-8352-01 7 49951629 49951629 G T VWC2 Splice_Site p.X276_splice 0.30 TCGA-85-8352-01 7 53103888 53103888 G A POM121L12 Missense_Mutation p.R175Q 0.73 deleterious(0.02) benign(0.006) TCGA-85-8352-01 7 63726999 63726999 G A ZNF679 Missense_Mutation p.G330S 0.20 deleterious(0.01) probably_damaging(1) TCGA-85-8352-01 7 88963229 88963229 T A ZNF804B Missense_Mutation p.D311E 0.65 tolerated(0.07) benign(0.325) TCGA-85-8352-01 8 110131749 110131749 G A TRHR 3'UTR 0.55 TCGA-85-8352-01 8 110445416 110445416 C A PKHD1L1 Missense_Mutation p.P1104Q 0.39 tolerated(0.55) possibly_damaging(0.609) TCGA-85-8352-01 8 110456936 110456936 A G PKHD1L1 Missense_Mutation p.D1613G 0.20 tolerated(0.23) benign(0.05) TCGA-85-8352-01 8 113318401 113318401 T A CSMD3 Nonsense_Mutation p.K2636* 0.40 TCGA-85-8352-01 8 113348881 113348881 C A CSMD3 Missense_Mutation p.W2340L 0.40 deleterious(0) probably_damaging(0.932) TCGA-85-8352-01 8 113662400 113662400 T A CSMD3 Silent p.P1061P 0.46 TCGA-85-8352-01 8 121279104 121279104 A T COL14A1 Missense_Mutation p.I1019F 0.37 deleterious(0) possibly_damaging(0.48) TCGA-85-8352-01 8 133150153 133150153 C A KCNQ3 Missense_Mutation p.R560M 0.57 deleterious(0) probably_damaging(0.983) TCGA-85-8352-01 8 139144715 139144716 - CCT FAM135B 3'UTR 0.21 TCGA-85-8352-01 8 33424322 33424322 T A RNF122 5'UTR 0.88 TCGA-85-8352-01 8 48696346 48696346 G A PRKDC Missense_Mutation p.P3710L 0.46 probably_damaging(1) TCGA-85-8352-01 8 56436623 56436623 T - XKR4 Frame_Shift_Del p.I597Mfs*25 0.30 TCGA-85-8352-01 8 59329421 59329421 G A UBXN2B Missense_Mutation p.E33K 0.35 tolerated(0.35) benign(0.118) TCGA-85-8352-01 8 70585236 70585236 G T SLCO5A1 Missense_Mutation p.H805Q 0.39 tolerated_low_confidence(0.65) benign(0.001) TCGA-85-8352-01 8 77775515 77775515 T A ZFHX4 Missense_Mutation p.S3189T 0.56 benign(0.005) TCGA-85-8352-01 8 77895878 77895878 C G PEX2 Missense_Mutation p.K179N 0.39 deleterious(0.02) benign(0.217) TCGA-85-8352-01 9 116224373 116224373 G T RGS3 Missense_Mutation p.G103C 0.90 tolerated_low_confidence(0.07) benign(0) TCGA-85-8352-01 9 12694044 12694044 G C TYRP1 Missense_Mutation p.L16F 0.45 deleterious(0.04) benign(0.005) TCGA-85-8352-01 9 130507136 130507136 G T SH2D3C Missense_Mutation p.R503S 0.91 tolerated(0.77) benign(0.012) TCGA-85-8352-01 9 130605481 130605481 G A ENG Silent p.P37P 0.41 TCGA-85-8352-01 9 135750502 135750502 C T AK8 Missense_Mutation p.V57M 1.00 deleterious(0) benign(0.038) TCGA-85-8352-01 9 17747077 17747077 A G SH3GL2 Missense_Mutation p.K20R 0.95 tolerated(0.12) probably_damaging(0.988) TCGA-85-8352-01 9 33073753 33073753 C A SMU1 Silent p.A26A 0.96 TCGA-85-8352-01 9 36351167 36351167 C A RNF38 Missense_Mutation p.G403V 0.16 deleterious(0) benign(0.387) TCGA-85-8352-01 9 6007634 6007634 C A KIAA2026 Missense_Mutation p.D52Y 0.97 deleterious_low_confidence(0.01) benign(0.196) TCGA-85-8352-01 9 69391103 69391103 T C ANKRD20A4 Missense_Mutation p.M204T 0.30 tolerated(0.11) benign(0.034) TCGA-85-8352-01 9 71155561 71155561 C A TMEM252 Missense_Mutation p.G57V 0.93 deleterious(0) probably_damaging(1) TCGA-85-8352-01 9 72893426 72893426 C - SMC5 Frame_Shift_Del p.A188Vfs*31 0.15 TCGA-85-8352-01 9 91652956 91652956 C G SHC3 Missense_Mutation p.M536I 0.92 deleterious(0.02) possibly_damaging(0.588) TCGA-85-8352-01 X 111097037 111097037 G T TRPC5 Missense_Mutation p.P400T 0.97 deleterious(0) probably_damaging(1) TCGA-85-8352-01 X 14861948 14861948 G A FANCB Missense_Mutation p.S774F 0.51 tolerated(0.19) benign(0.178) TCGA-85-8352-01 X 149013340 149013340 C T MAGEA8 Silent p.S98S 0.98 TCGA-85-8352-01 X 78426638 78426638 A C GPR174 Missense_Mutation p.Y45S 1.00 tolerated(0.25) probably_damaging(0.968) TCGA-85-8353-01 10 116930966 116930966 G C ATRNL1 Missense_Mutation p.D422H 0.30 deleterious(0.02) benign(0.372) TCGA-85-8353-01 10 52566497 52566497 T A A1CF Missense_Mutation p.T593S 0.21 tolerated_low_confidence(0.1) benign(0.096) TCGA-85-8353-01 10 7765497 7765497 G A ITIH2 Silent p.V317V 0.15 TCGA-85-8353-01 10 88428397 88428397 A T LDB3 Intron 0.32 TCGA-85-8353-01 10 89692902 89692902 G A PTEN Missense_Mutation p.G129E 0.15 deleterious(0) probably_damaging(0.998) TCGA-85-8353-01 10 92508888 92508888 C A HTR7 Missense_Mutation p.A335S 0.22 deleterious(0.01) probably_damaging(0.98) TCGA-85-8353-01 11 113103014 113103014 C A NCAM1 Missense_Mutation p.L504M 0.17 deleterious(0) probably_damaging(0.987) TCGA-85-8353-01 11 121178012 121178012 G A SC5D Missense_Mutation p.D231N 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-85-8353-01 11 1268710 1268710 A C MUC5B Silent p.R3534R 0.23 TCGA-85-8353-01 11 4843101 4843101 G T OR51F2 Missense_Mutation p.M162I 0.23 tolerated(1) benign(0.005) TCGA-85-8353-01 11 56380918 56380918 G C OR5M1 Missense_Mutation p.P21A 0.24 tolerated(0.1) probably_damaging(0.999) TCGA-85-8353-01 11 60184441 60184441 G A MS4A14 Missense_Mutation p.R700K 0.20 tolerated_low_confidence(0.67) benign(0) TCGA-85-8353-01 11 62678465 62678465 C T CHRM1 Silent p.S36S 0.23 TCGA-85-8353-01 11 99690335 99690335 A G CNTN5 Missense_Mutation p.K39R 0.09 tolerated_low_confidence(0.28) benign(0.01) TCGA-85-8353-01 12 100784880 100784880 C A SLC17A8 Missense_Mutation p.N152K 0.23 deleterious(0.01) possibly_damaging(0.889) TCGA-85-8353-01 12 111744847 111744847 G A CUX2 Silent p.L327L 0.17 TCGA-85-8353-01 12 117904984 117904984 G A KSR2 3'UTR 0.37 TCGA-85-8353-01 12 117904985 117904985 C A KSR2 3'UTR 0.33 TCGA-85-8353-01 12 122618379 122618379 C T MLXIP Missense_Mutation p.S526F 0.19 deleterious(0.05) possibly_damaging(0.756) TCGA-85-8353-01 12 122999694 122999694 C A RSRC2 Missense_Mutation p.G228V 0.22 deleterious(0.01) unknown(0) TCGA-85-8353-01 12 20870105 20870105 G C SLCO1C1 Missense_Mutation p.G239A 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-85-8353-01 12 42726497 42726497 G A PPHLN1 Intron 0.14 TCGA-85-8353-01 12 49433841 49433841 G A KMT2D Missense_Mutation p.T2571I 0.06 possibly_damaging(0.53) TCGA-85-8353-01 12 50356014 50356014 A C AQP5 Missense_Mutation p.I72L 0.19 deleterious(0) benign(0.17) TCGA-85-8353-01 12 50395032 50395032 A T RACGAP1 Missense_Mutation p.S185T 0.13 deleterious(0.04) probably_damaging(0.931) TCGA-85-8353-01 12 54393968 54393968 T C HOXC9 5'UTR 0.22 TCGA-85-8353-01 12 56676295 56676295 G C CS Missense_Mutation p.S166C 0.12 deleterious(0) probably_damaging(0.997) TCGA-85-8353-01 12 72425476 72425476 T A TPH2 3'UTR 0.12 TCGA-85-8353-01 13 41705906 41705906 C A KBTBD6 Nonsense_Mutation p.E248* 0.30 TCGA-85-8353-01 13 48951111 48951111 A - RB1 Frame_Shift_Del p.I425Sfs*32 0.19 TCGA-85-8353-01 14 105355896 105355896 G A CEP170B Intron 0.12 TCGA-85-8353-01 14 106552354 106552354 C A IGHV3-9 Missense_Mutation p.K95N 0.18 deleterious_low_confidence(0.04) benign(0.246) TCGA-85-8353-01 14 19988131 19988131 T C POTEM 3'UTR 0.15 TCGA-85-8353-01 14 20692296 20692296 C T OR11H6 Missense_Mutation p.A143V 0.12 deleterious(0) probably_damaging(0.936) TCGA-85-8353-01 14 77843855 77843855 T C SAMD15 Missense_Mutation p.Y32H 0.18 tolerated(0.45) benign(0.002) TCGA-85-8353-01 15 20193147 20193147 A G IGHV3OR15-7 Missense_Mutation p.C41R 0.13 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-85-8353-01 15 28443858 28443858 C A HERC2 Missense_Mutation p.G2592C 0.18 probably_damaging(1) TCGA-85-8353-01 15 28999694 28999694 T C WHAMMP2 RNA 0.14 TCGA-85-8353-01 15 49325193 49325193 A T SECISBP2L Silent p.I211I 0.21 TCGA-85-8353-01 15 63045984 63045984 G T TLN2 Missense_Mutation p.V1449F 0.12 deleterious(0) probably_damaging(0.918) TCGA-85-8353-01 15 74337397 74337397 G T PML 3'UTR 0.18 TCGA-85-8353-01 15 74636322 74636322 C A CYP11A1 Missense_Mutation p.V213F 0.13 deleterious(0) probably_damaging(0.994) TCGA-85-8353-01 15 86791016 86791016 T G AGBL1 Missense_Mutation p.L168W 0.12 deleterious(0) probably_damaging(0.94) TCGA-85-8353-01 15 93173552 93173552 G T FAM174B Missense_Mutation p.T123K 0.19 deleterious(0) probably_damaging(0.998) TCGA-85-8353-01 15 93489446 93489446 G A CHD2 Silent p.K459K 0.08 TCGA-85-8353-01 16 48265937 48265937 C T ABCC11 5'UTR 0.27 TCGA-85-8353-01 16 75238162 75238162 A G CTRB2 Missense_Mutation p.I230T 0.29 deleterious(0.02) probably_damaging(0.992) TCGA-85-8353-01 17 15983318 15983318 G A NCOR1 Missense_Mutation p.S1154L 0.06 benign(0.135) TCGA-85-8353-01 17 19611745 19611748 GTGA - SLC47A2 Frame_Shift_Del p.S202Tfs*39 0.22 TCGA-85-8353-01 17 19645501 19645501 C A ALDH3A1 Missense_Mutation p.G169C 0.36 deleterious(0) probably_damaging(0.998) TCGA-85-8353-01 17 29548881 29548881 T G NF1 Missense_Mutation p.L552R 0.47 deleterious(0) probably_damaging(0.991) TCGA-85-8353-01 17 3365805 3365805 T C SPATA22 Missense_Mutation p.N101D 0.36 tolerated(0.18) benign(0.019) TCGA-85-8353-01 17 59934426 59934426 A G BRIP1 Silent p.T124T 0.18 TCGA-85-8353-01 17 6014096 6014096 C A WSCD1 Missense_Mutation p.R339S 0.37 tolerated(0.05) probably_damaging(0.959) TCGA-85-8353-01 17 72338790 72338790 A T KIF19 Missense_Mutation p.T85S 0.33 tolerated(0.05) possibly_damaging(0.824) TCGA-85-8353-01 17 7577046 7577046 C A TP53 Nonsense_Mutation p.E298* 0.29 TCGA-85-8353-01 17 79650890 79650890 C T ARL16 5'UTR 0.37 TCGA-85-8353-01 19 15299161 15299161 T A NOTCH3 Splice_Site p.X460_splice 0.23 TCGA-85-8353-01 19 17533165 17533165 G A MVB12A Missense_Mutation p.R104H 0.04 deleterious(0) probably_damaging(0.937) TCGA-85-8353-01 19 17766700 17766700 G A UNC13A Silent p.D425D 0.17 TCGA-85-8353-01 19 23159350 23159350 T A ZNF728 Missense_Mutation p.K263N 0.11 deleterious(0.01) benign(0.271) TCGA-85-8353-01 19 39826667 39826667 G A GMFG 5'UTR 0.25 TCGA-85-8353-01 19 41118034 41118034 G T LTBP4 Silent p.S812S 0.27 TCGA-85-8353-01 19 41600212 41600212 C T CYP2A13 Missense_Mutation p.R346W 0.18 deleterious(0.02) benign(0.034) TCGA-85-8353-01 19 49238626 49238626 G A RASIP1 Missense_Mutation p.R336W 0.26 deleterious(0) possibly_damaging(0.898) TCGA-85-8353-01 19 55418034 55418034 C A NCR1 Missense_Mutation p.P75H 0.16 tolerated(0.57) benign(0.079) TCGA-85-8353-01 19 56300652 56300652 C A NLRP11 Missense_Mutation p.G876V 0.21 deleterious(0) probably_damaging(0.999) TCGA-85-8353-01 19 56300653 56300653 C A NLRP11 Nonsense_Mutation p.G876* 0.21 TCGA-85-8353-01 1 107979377 107979377 G A NTNG1 Missense_Mutation p.C449Y 0.30 deleterious(0) benign(0.126) TCGA-85-8353-01 1 111854319 111854319 C G CHIA Missense_Mutation p.L12V 0.22 tolerated(0.61) benign(0.364) TCGA-85-8353-01 1 111860309 111860309 C A CHIA Missense_Mutation p.R163S 0.22 tolerated(0.41) benign(0.054) TCGA-85-8353-01 1 147380691 147380691 C A GJA8 Silent p.T203T 0.17 TCGA-85-8353-01 1 152280616 152280616 C G FLG Missense_Mutation p.S2249T 0.08 benign(0.418) TCGA-85-8353-01 1 163044416 163044416 A T RGS4 3'UTR 0.07 TCGA-85-8353-01 1 180031461 180031461 A G CEP350 Missense_Mutation p.K1790R 0.12 benign(0.424) TCGA-85-8353-01 1 183515176 183515176 G A SMG7 Missense_Mutation p.V770M 0.12 tolerated_low_confidence(0.13) benign(0.012) TCGA-85-8353-01 1 185069026 185069026 A C RNF2 Missense_Mutation p.M281L 0.14 tolerated(0.35) benign(0) TCGA-85-8353-01 1 196918687 196918687 C A CFHR2 Missense_Mutation p.S54Y 0.18 tolerated(0.97) probably_damaging(0.979) TCGA-85-8353-01 1 201185745 201185745 G C IGFN1 Missense_Mutation p.E3153D 0.17 probably_damaging(0.978) TCGA-85-8353-01 1 205053024 205053024 G C TMEM81 Missense_Mutation p.S142C 0.13 deleterious(0.01) possibly_damaging(0.843) TCGA-85-8353-01 1 211652457 211652457 G T RD3 Missense_Mutation p.S170Y 0.16 deleterious(0) probably_damaging(0.983) TCGA-85-8353-01 1 22902836 22902836 C A EPHA8 Missense_Mutation p.R96S 0.23 deleterious(0) probably_damaging(0.999) TCGA-85-8353-01 1 236738110 236738110 G A HEATR1 Silent p.L1060L 0.25 TCGA-85-8353-01 1 236757316 236757316 C A HEATR1 Missense_Mutation p.A397S 0.21 tolerated(0.08) possibly_damaging(0.893) TCGA-85-8353-01 1 240374468 240374468 C T FMN2 Missense_Mutation p.S1333F 0.26 probably_damaging(0.996) TCGA-85-8353-01 1 241920690 241920690 G T WDR64 Missense_Mutation p.D616Y 0.19 deleterious(0.05) benign(0.005) TCGA-85-8353-01 1 247061587 247061587 C A AHCTF1 Missense_Mutation p.D525Y 0.18 deleterious(0) probably_damaging(0.996) TCGA-85-8353-01 1 248262806 248262806 C A OR2L13 Silent p.A43A 0.22 TCGA-85-8353-01 1 248366580 248366580 C T OR2M3 Missense_Mutation p.L71F 0.26 deleterious(0.03) benign(0.103) TCGA-85-8353-01 1 248457935 248457935 C A OR2T12 Missense_Mutation p.A316S 0.13 tolerated_low_confidence(0.57) benign(0.002) TCGA-85-8353-01 1 248457936 248457936 C G OR2T12 Missense_Mutation p.E315D 0.14 tolerated_low_confidence(0.59) benign(0.015) TCGA-85-8353-01 1 42620482 42620482 G T GUCA2B Missense_Mutation p.Q74H 0.26 tolerated(0.12) possibly_damaging(0.582) TCGA-85-8353-01 1 42620483 42620483 G T GUCA2B Missense_Mutation p.D75Y 0.27 deleterious(0) probably_damaging(0.998) TCGA-85-8353-01 1 43869314 43869314 C T SZT2 Missense_Mutation p.P66S 0.22 tolerated(0.52) possibly_damaging(0.838) TCGA-85-8353-01 20 21306931 21306931 T C XRN2 Silent p.N30N 0.20 TCGA-85-8353-01 20 21494275 21494275 C A NKX2-2 Silent p.S11S 0.20 TCGA-85-8353-01 20 25187779 25187779 C T ENTPD6 Missense_Mutation p.A41V 0.15 tolerated_low_confidence(0.16) benign(0.047) TCGA-85-8353-01 20 31294382 31294382 T C COMMD7 Intron 0.31 TCGA-85-8353-01 20 31571722 31571722 C T SUN5 Missense_Mutation p.V340M 0.17 deleterious(0.03) possibly_damaging(0.544) TCGA-85-8353-01 20 35929793 35929793 C T MANBAL Missense_Mutation p.P43S 0.18 tolerated(0.05) benign(0.229) TCGA-85-8353-01 20 37356667 37356667 C A SLC32A1 Silent p.I321I 0.11 TCGA-85-8353-01 20 3944604 3944604 G A RNF24 Missense_Mutation p.P42S 0.12 deleterious(0.02) probably_damaging(0.996) TCGA-85-8353-01 20 55088446 55088446 A G RTFDC1 Missense_Mutation p.R185G 0.17 deleterious(0) possibly_damaging(0.904) TCGA-85-8353-01 20 57617849 57617849 C A SLMO2 5'UTR 0.33 TCGA-85-8353-01 20 60882753 60882753 C G ADRM1 Missense_Mutation p.P242R 0.07 tolerated(0.06) unknown(0) TCGA-85-8353-01 20 62339970 62339970 A G ZGPAT Missense_Mutation p.Y13C 0.11 deleterious(0) probably_damaging(0.977) TCGA-85-8353-01 21 22782751 22782751 T A NCAM2 Silent p.T451T 0.17 TCGA-85-8353-01 21 31802960 31802960 C T KRTAP13-4 Missense_Mutation p.P123S 0.23 tolerated(0.29) probably_damaging(0.913) TCGA-85-8353-01 22 24035987 24035987 C A RGL4 Nonsense_Mutation p.C246* 0.16 TCGA-85-8353-01 2 111395529 111395529 T A BUB1 3'UTR 0.11 TCGA-85-8353-01 2 125547563 125547563 G A CNTNAP5 Missense_Mutation p.R945K 0.14 deleterious(0.03) benign(0.008) TCGA-85-8353-01 2 131976059 131976059 C A POTEE Nonsense_Mutation p.C28* 0.09 TCGA-85-8353-01 2 143642971 143642971 C G KYNU Missense_Mutation p.T12R 0.22 tolerated(0.21) benign(0.013) TCGA-85-8353-01 2 166231422 166231422 T C SCN2A Silent p.N1400N 0.22 TCGA-85-8353-01 2 168099452 168099452 A T XIRP2 Missense_Mutation p.Y517F 0.20 probably_damaging(0.927) TCGA-85-8353-01 2 170487294 170487294 A G PPIG Silent p.E186E 0.14 TCGA-85-8353-01 2 179464510 179464510 G T TTN Silent p.A18706A 0.12 TCGA-85-8353-01 2 179582870 179582870 T A TTN Missense_Mutation p.D8288V 0.29 TCGA-85-8353-01 2 179622542 179622542 G T TTN Missense_Mutation p.Q3469K 0.11 TCGA-85-8353-01 2 203684515 203684515 C T ICA1L Missense_Mutation p.R156H 0.11 deleterious(0) probably_damaging(0.991) TCGA-85-8353-01 2 207629973 207629973 C T MDH1B Splice_Site p.X8_splice 0.09 TCGA-85-8353-01 2 219252633 219252633 C T SLC11A1 Silent p.A250A 0.14 TCGA-85-8353-01 2 228883238 228883238 G A SPHKAP Missense_Mutation p.H778Y 0.13 tolerated(1) benign(0.002) TCGA-85-8353-01 2 230654393 230654393 T C TRIP12 Silent p.S1468S 0.05 TCGA-85-8353-01 2 231174752 231174752 G A SP140 Silent p.E724E 0.14 TCGA-85-8353-01 2 238668801 238668801 C T LRRFIP1 Missense_Mutation p.T281I 0.06 deleterious(0) probably_damaging(0.968) TCGA-85-8353-01 2 39281778 39281778 T A SOS1 Missense_Mutation p.N233Y 0.06 tolerated(1) possibly_damaging(0.621) TCGA-85-8353-01 2 7027181 7027181 G A RSAD2 Silent p.R208R 0.12 TCGA-85-8353-01 2 70314806 70314806 C T PCBP1 5'UTR 0.21 TCGA-85-8353-01 2 89544412 89544412 C T IGKV2-30 Missense_Mutation p.R71H 0.17 tolerated(0.09) benign(0.005) TCGA-85-8353-01 2 95815308 95815308 T A ZNF514 Missense_Mutation p.R308W 0.27 deleterious(0) probably_damaging(0.999) TCGA-85-8353-01 3 113115366 113115366 C A WDR52 Missense_Mutation p.G593V 0.16 deleterious(0) benign(0.367) TCGA-85-8353-01 3 118922875 118922875 A T UPK1B 3'UTR 0.20 TCGA-85-8353-01 3 122631694 122631694 G T SEMA5B Nonsense_Mutation p.C961* 0.32 TCGA-85-8353-01 3 133692600 133692600 C T SLCO2A1 Missense_Mutation p.G102S 0.22 deleterious(0) probably_damaging(1) TCGA-85-8353-01 3 14960299 14960299 A G FGD5 Silent p.L1176L 0.24 TCGA-85-8353-01 3 152174117 152174117 T C MBNL1 Silent p.S359S 0.03 TCGA-85-8353-01 3 157820594 157820594 C T SHOX2 Missense_Mutation p.S167N 0.15 deleterious(0) probably_damaging(0.993) TCGA-85-8353-01 3 170781640 170781640 C G TNIK 3'UTR 0.46 TCGA-85-8353-01 3 186395391 186395391 C A HRG Missense_Mutation p.P433T 0.27 deleterious_low_confidence(0.02) possibly_damaging(0.908) TCGA-85-8353-01 3 188933138 188933138 G T TPRG1 Nonsense_Mutation p.G90* 0.05 TCGA-85-8353-01 3 188933139 188933139 G T TPRG1 Missense_Mutation p.G90V 0.05 deleterious(0.03) benign(0.152) TCGA-85-8353-01 3 38835485 38835485 C A SCN10A Missense_Mutation p.G6V 0.23 deleterious(0.03) benign(0.341) TCGA-85-8353-01 3 47469013 47469013 G A SCAP Silent p.F185F 0.27 TCGA-85-8353-01 3 48717581 48717581 G A NCKIPSD Missense_Mutation p.R392W 0.29 tolerated(0.18) possibly_damaging(0.586) TCGA-85-8353-01 3 61975434 61975434 A T PTPRG Missense_Mutation p.N109I 0.19 tolerated(0.14) benign(0.006) TCGA-85-8353-01 3 74535686 74535686 C A CNTN3 Missense_Mutation p.W93C 0.20 deleterious(0.01) possibly_damaging(0.716) TCGA-85-8353-01 3 74535687 74535687 C A CNTN3 Missense_Mutation p.W93L 0.20 tolerated(0.06) benign(0.082) TCGA-85-8353-01 3 9991547 9991547 C T PRRT3 Missense_Mutation p.E85K 0.10 tolerated_low_confidence(0.23) benign(0.004) TCGA-85-8353-01 4 106604214 106604214 C A INTS12 Silent p.T355T 0.06 TCGA-85-8353-01 4 129192522 129192522 T C PGRMC2 Silent p.P231P 0.22 TCGA-85-8353-01 4 144336807 144336807 A G GAB1 Missense_Mutation p.I84V 0.18 tolerated(0.76) benign(0.421) TCGA-85-8353-01 4 144361470 144361470 G T GAB1 Missense_Mutation p.R507M 0.24 deleterious(0) probably_damaging(1) TCGA-85-8353-01 4 42414951 42414951 C G ATP8A1 Missense_Mutation p.Q1159H 0.33 tolerated(0.15) probably_damaging(0.976) TCGA-85-8353-01 4 4276363 4276363 T A LYAR Missense_Mutation p.K188I 0.32 deleterious(0) probably_damaging(0.94) TCGA-85-8353-01 4 71472428 71472428 G - AMBN Frame_Shift_Del p.W442Cfs*43 0.17 TCGA-85-8353-01 4 94436431 94436431 T C GRID2 Missense_Mutation p.Y688H 0.32 deleterious(0.02) probably_damaging(0.998) TCGA-85-8353-01 5 139251422 139251422 G A NRG2 Silent p.S332S 0.27 TCGA-85-8353-01 5 140811675 140811675 C T PCDHGA12 Missense_Mutation p.P450L 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-85-8353-01 5 146793168 146793168 A G DPYSL3 Silent p.S291S 0.27 TCGA-85-8353-01 5 147549324 147549324 T C SPINK14 Missense_Mutation p.L10P 0.33 deleterious(0) possibly_damaging(0.829) TCGA-85-8353-01 5 16764455 16764455 A C MYO10 Missense_Mutation p.F410L 0.06 deleterious(0) probably_damaging(0.987) TCGA-85-8353-01 5 171777368 171777368 C G SH3PXD2B Missense_Mutation p.Q337H 0.25 tolerated(0.1) benign(0.009) TCGA-85-8353-01 5 23518000 23518002 TTG AT PRDM9 Frame_Shift_Del p.W105* 0.11 TCGA-85-8353-01 5 24498551 24498551 C A CDH10 Missense_Mutation p.V491L 0.16 tolerated(0.26) benign(0.002) TCGA-85-8353-01 5 45396741 45396741 A G HCN1 Silent p.Y361Y 0.18 TCGA-85-8353-01 5 5461877 5461877 A G KIAA0947 Silent p.E810E 0.11 TCGA-85-8353-01 6 107956493 107956493 C G SOBP Silent p.A815A 0.16 TCGA-85-8353-01 6 121481208 121481208 T C TBC1D32 Silent p.P907P 0.13 TCGA-85-8353-01 6 123892112 123892112 A G TRDN Missense_Mutation p.V63A 0.12 deleterious_low_confidence(0) possibly_damaging(0.472) TCGA-85-8353-01 6 138640905 138640905 C T KIAA1244 Missense_Mutation p.R1514W 0.21 deleterious(0) probably_damaging(0.999) TCGA-85-8353-01 6 167786689 167786689 C A TCP10 Missense_Mutation p.A317S 0.10 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-85-8353-01 6 170597823 170597823 C A DLL1 Missense_Mutation p.A136S 0.15 tolerated(0.91) benign(0.006) TCGA-85-8353-01 6 26158420 26158420 C G HIST1H2BD Missense_Mutation p.A8G 0.20 deleterious_low_confidence(0.04) benign(0.016) TCGA-85-8353-01 6 28116554 28116554 G A ZKSCAN8 Silent p.V123V 0.12 TCGA-85-8353-01 6 29429575 29429575 T G OR2H1 Missense_Mutation p.F10C 0.18 deleterious(0) probably_damaging(0.999) TCGA-85-8353-01 6 50681721 50681721 T A TFAP2D 5'UTR 0.23 TCGA-85-8353-01 6 55739510 55739510 G T BMP5 Missense_Mutation p.Q52K 0.19 deleterious(0) probably_damaging(0.996) TCGA-85-8353-01 6 72006080 72006080 A T OGFRL1 Missense_Mutation p.N154I 0.17 deleterious(0) probably_damaging(0.983) TCGA-85-8353-01 6 72678693 72678693 G T RIMS1 Missense_Mutation p.V58F 0.19 deleterious_low_confidence(0.05) probably_damaging(0.979) TCGA-85-8353-01 6 75890676 75890676 C A COL12A1 Nonsense_Mutation p.G715* 0.18 TCGA-85-8353-01 6 79707219 79707219 C T PHIP Missense_Mutation p.A705T 0.17 tolerated(0.11) probably_damaging(0.972) TCGA-85-8353-01 6 97063623 97063623 G T FHL5 Missense_Mutation p.G277V 0.10 deleterious(0) probably_damaging(0.965) TCGA-85-8353-01 7 150936119 150936119 G A SMARCD3 3'UTR 0.05 TCGA-85-8353-01 7 154172063 154172063 T A DPP6 Missense_Mutation p.V133E 0.21 deleterious(0) probably_damaging(0.938) TCGA-85-8353-01 7 37960345 37960360 CCCTGGTCCCGGCTAC - EPDR1 5'UTR 0.27 TCGA-85-8353-01 7 4856908 4856908 G T RADIL Missense_Mutation p.L564M 0.31 tolerated(1) benign(0.088) TCGA-85-8353-01 7 73973346 73973346 G T GTF2IRD1 Missense_Mutation p.A787S 0.19 tolerated(0.07) probably_damaging(0.953) TCGA-85-8353-01 7 94293438 94293438 G T PEG10 Missense_Mutation p.M190I 0.22 tolerated(0.1) possibly_damaging(0.525) TCGA-85-8353-01 7 96650154 96650154 T A DLX5 Missense_Mutation p.N255I 0.27 deleterious(0) benign(0.037) TCGA-85-8353-01 8 110476919 110476919 G T PKHD1L1 Missense_Mutation p.G2620C 0.03 deleterious(0) probably_damaging(1) TCGA-85-8353-01 8 110509453 110509453 G T PKHD1L1 Missense_Mutation p.M3517I 0.11 tolerated(0.19) benign(0.079) TCGA-85-8353-01 8 139155266 139155266 T A FAM135B Silent p.I1209I 0.04 TCGA-85-8353-01 8 144804015 144804015 C G MAPK15 Missense_Mutation p.R475G 0.40 tolerated(0.47) benign(0.414) TCGA-85-8353-01 8 144941464 144941464 C A EPPK1 Silent p.T1986T 0.05 TCGA-85-8353-01 8 29037687 29037687 C G KIF13B Missense_Mutation p.E218D 0.28 deleterious(0) probably_damaging(0.984) TCGA-85-8353-01 8 38853912 38853912 T C TM2D2 Missense_Mutation p.Q16R 0.25 deleterious_low_confidence(0.02) benign(0.122) TCGA-85-8353-01 8 38880717 38880717 G C ADAM9 Missense_Mutation p.E263Q 0.17 deleterious(0.03) probably_damaging(0.978) TCGA-85-8353-01 8 38947585 38947585 G A ADAM9 Silent p.R696R 0.27 TCGA-85-8353-01 8 42163881 42163881 C A IKBKB Missense_Mutation p.D166E 0.24 deleterious(0.01) possibly_damaging(0.814) TCGA-85-8353-01 8 48691615 48691615 C T PRKDC Silent p.L3842L 0.14 TCGA-85-8353-01 8 55542271 55542271 T G RP1 Missense_Mutation p.I1943M 0.06 deleterious(0) probably_damaging(0.94) TCGA-85-8353-01 8 56863025 56863025 G A LYN Missense_Mutation p.E98K 0.14 deleterious(0) possibly_damaging(0.786) TCGA-85-8353-01 8 88885308 88885308 C - DCAF4L2 Frame_Shift_Del p.D298Tfs*2 0.18 TCGA-85-8353-01 8 89180163 89180163 A T MMP16 Silent p.T148T 0.06 TCGA-85-8353-01 8 95527145 95527145 A G KIAA1429 Silent p.L901L 0.10 TCGA-85-8353-01 9 105757649 105757649 C A CYLC2 5'UTR 0.18 TCGA-85-8353-01 9 113228241 113228241 T C SVEP1 Missense_Mutation p.T1076A 0.17 benign(0.042) TCGA-85-8353-01 9 128678148 128678148 G C PBX3 Missense_Mutation p.R153T 0.24 deleterious(0) probably_damaging(0.944) TCGA-85-8353-01 9 134136533 134136533 G A FAM78A Silent p.N176N 0.27 TCGA-85-8353-01 9 135073942 135073942 G A NTNG2 Missense_Mutation p.R268Q 0.19 deleterious(0.02) possibly_damaging(0.616) TCGA-85-8353-01 9 136582487 136582487 G T SARDH Missense_Mutation p.L371M 0.22 deleterious(0.01) probably_damaging(0.983) TCGA-85-8353-01 9 17457656 17457656 A G CNTLN Silent p.S1083S 0.19 TCGA-85-8353-01 9 23692827 23692827 C G ELAVL2 Missense_Mutation p.G270R 0.24 deleterious(0.02) benign(0.033) TCGA-85-8353-01 9 2729735 2729735 T C KCNV2 3'UTR 0.21 TCGA-85-8353-01 9 35793036 35793036 G T NPR2 Nonsense_Mutation p.E211* 0.15 TCGA-85-8353-01 9 80943082 80943082 A C PSAT1 Missense_Mutation p.M329L 0.28 tolerated(0.97) benign(0.072) TCGA-85-8353-01 9 8528777 8528777 C T PTPRD Missense_Mutation p.D119N 0.23 tolerated(0.11) probably_damaging(0.926) TCGA-85-8353-01 9 96021252 96021252 G T WNK2 Missense_Mutation p.A808S 0.17 unknown(0) TCGA-85-8353-01 X 129148601 129148601 G A BCORL1 Missense_Mutation p.S618N 0.36 benign(0.015) TCGA-85-8353-01 X 1584903 1584903 C T P2RY8 Missense_Mutation p.M183I 0.19 deleterious(0.01) possibly_damaging(0.673) TCGA-85-8353-01 X 1752116 1752116 A G ASMT Silent p.P240P 0.18 TCGA-85-8353-01 X 22239742 22239742 A G PHEX Missense_Mutation p.D594G 0.33 deleterious(0) probably_damaging(0.999) TCGA-85-8353-01 X 26212999 26212999 C A MAGEB6 Missense_Mutation p.Q346K 0.32 deleterious(0.04) probably_damaging(0.959) TCGA-85-8353-01 X 30268665 30268665 C A MAGEB1 Silent p.R19R 0.25 TCGA-85-8353-01 X 35993936 35993936 T A CXorf22 Silent p.V873V 0.35 TCGA-85-8353-01 X 55047641 55047641 G T ALAS2 Missense_Mutation p.T161N 0.34 deleterious(0) probably_damaging(0.951) TCGA-85-8353-01 X 73959245 73959245 T C KIAA2022 Missense_Mutation p.I1516V 0.48 tolerated_low_confidence(0.2) benign(0.057) TCGA-85-8354-01 10 101604123 101604123 C T ABCC2 Silent p.S1296S 0.34 TCGA-85-8354-01 10 104622664 104622664 A T C10orf32 Missense_Mutation p.N102Y 0.39 tolerated(0.63) benign(0.124) TCGA-85-8354-01 10 107023188 107023188 T C SORCS3 3'UTR 0.42 TCGA-85-8354-01 10 118969573 118969573 A G KCNK18 Silent p.T306T 0.41 TCGA-85-8354-01 10 135094908 135094908 C G TUBGCP2 Silent p.L842L 0.30 TCGA-85-8354-01 10 16911792 16911792 G A CUBN Silent p.Y3099Y 0.07 TCGA-85-8354-01 10 32561044 32561044 C A EPC1 Missense_Mutation p.A662S 0.60 deleterious(0.04) probably_damaging(0.992) TCGA-85-8354-01 10 50946288 50946288 C T OGDHL Silent p.A780A 0.36 TCGA-85-8354-01 10 60549603 60549603 C G BICC1 Missense_Mutation p.H319Q 0.36 tolerated(0.51) benign(0.387) TCGA-85-8354-01 10 88469676 88469676 C G LDB3 Missense_Mutation p.S372C 0.27 deleterious(0.01) benign(0.088) TCGA-85-8354-01 11 1017369 1017369 G T MUC6 Missense_Mutation p.S1811Y 0.05 probably_damaging(0.962) TCGA-85-8354-01 11 115109246 115109246 T C CADM1 Missense_Mutation p.E133G 0.34 deleterious(0.02) probably_damaging(0.954) TCGA-85-8354-01 11 124180585 124180585 G A OR8D1 Silent p.P26P 0.23 TCGA-85-8354-01 11 17352498 17352498 C T NUCB2 Missense_Mutation p.S408L 0.23 tolerated_low_confidence(0.05) benign(0.14) TCGA-85-8354-01 11 22399031 22399031 C A SLC17A6 Silent p.A498A 0.50 TCGA-85-8354-01 11 26646021 26646021 A C ANO3 Missense_Mutation p.I617L 0.23 tolerated(0.14) benign(0.039) TCGA-85-8354-01 11 4471408 4471408 A G OR52K2 Missense_Mutation p.N280S 0.22 tolerated(0.06) benign(0.297) TCGA-85-8354-01 11 5248219 5248219 G C HBB Silent p.A11A 0.20 TCGA-85-8354-01 11 55033081 55033081 G A TRIM48 Silent p.K155K 0.28 TCGA-85-8354-01 11 55033082 55033082 C A TRIM48 Missense_Mutation p.L156I 0.28 deleterious(0.05) possibly_damaging(0.465) TCGA-85-8354-01 11 61050369 61050369 C T VWCE Missense_Mutation p.E184K 0.20 deleterious(0.03) probably_damaging(0.998) TCGA-85-8354-01 11 64527171 64527171 C T PYGM Missense_Mutation p.R67H 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-85-8354-01 11 68676066 68676066 G C IGHMBP2 Missense_Mutation p.G172R 0.18 tolerated(0.05) possibly_damaging(0.695) TCGA-85-8354-01 11 70331834 70331834 C T SHANK2 Missense_Mutation p.E1523K 0.08 deleterious(0.01) benign(0.305) TCGA-85-8354-01 11 73589821 73589821 T C PAAF1 Intron 0.46 TCGA-85-8354-01 11 7670036 7670036 A T PPFIBP2 Silent p.L601L 0.46 TCGA-85-8354-01 12 104681108 104681108 C A TXNRD1 Intron 0.28 TCGA-85-8354-01 12 11338969 11338969 G T TAS2R42 Missense_Mutation p.P192H 0.30 deleterious(0) probably_damaging(1) TCGA-85-8354-01 12 113830830 113830830 G C SDS Missense_Mutation p.I301M 0.25 deleterious(0) possibly_damaging(0.898) TCGA-85-8354-01 12 117723067 117723067 G A NOS1 Missense_Mutation p.A454V 0.07 deleterious(0.02) benign(0.186) TCGA-85-8354-01 12 283807 283807 G T IQSEC3 Missense_Mutation p.G1053W 0.46 deleterious(0) benign(0.291) TCGA-85-8354-01 12 6670110 6670110 C A NOP2 Missense_Mutation p.R478L 0.38 deleterious(0.01) probably_damaging(0.93) TCGA-85-8354-01 12 7636228 7636228 A G CD163 Silent p.R941R 0.33 TCGA-85-8354-01 12 83358837 83358837 G T TMTC2 Nonsense_Mutation p.E545* 0.34 TCGA-85-8354-01 12 91558417 91558417 T G DCN Missense_Mutation p.K97Q 0.48 deleterious(0.04) benign(0.023) TCGA-85-8354-01 12 95660186 95660186 G C VEZT Missense_Mutation p.W163S 0.30 tolerated(0.1) benign(0.062) TCGA-85-8354-01 13 100925576 100925576 C A PCCA Missense_Mutation p.F347L 0.68 deleterious(0) probably_damaging(1) TCGA-85-8354-01 14 103988801 103988801 C G CKB Silent p.L10L 0.58 TCGA-85-8354-01 14 105622167 105622167 C T JAG2 Missense_Mutation p.R212Q 0.49 deleterious(0.01) benign(0.344) TCGA-85-8354-01 14 20296324 20296324 G T OR4N2 Silent p.T239T 0.32 TCGA-85-8354-01 14 52478363 52478363 C G NID2 Missense_Mutation p.E1153D 0.47 tolerated(0.18) benign(0.048) TCGA-85-8354-01 14 58915116 58915116 C T KIAA0586 Missense_Mutation p.S342F 0.45 tolerated(0.07) possibly_damaging(0.6) TCGA-85-8354-01 14 60072106 60072106 C T RTN1 Missense_Mutation p.D698N 0.52 deleterious(0) probably_damaging(0.993) TCGA-85-8354-01 14 68044910 68044910 C T PLEKHH1 Silent p.L915L 0.58 TCGA-85-8354-01 14 68151773 68151773 G C RDH11 Silent p.A271A 0.22 TCGA-85-8354-01 14 78140572 78140572 G - ALKBH1 Frame_Shift_Del p.A252Pfs*25 0.24 TCGA-85-8354-01 14 91779977 91779977 C T CCDC88C Missense_Mutation p.R728K 0.49 tolerated(0.91) benign(0.071) TCGA-85-8354-01 15 25334036 25334036 G A SNORD116-20 RNA 0.46 TCGA-85-8354-01 15 48623792 48623792 G C DUT Missense_Mutation p.R27P 0.30 tolerated_low_confidence(0.11) benign(0.222) TCGA-85-8354-01 15 56388619 56388619 G C RFX7 Missense_Mutation p.P436R 0.35 deleterious(0) probably_damaging(1) TCGA-85-8354-01 15 75684851 75684851 G T SIN3A Silent p.P861P 0.45 TCGA-85-8354-01 15 75782579 75782579 C G PTPN9 Silent p.V344V 0.39 TCGA-85-8354-01 15 85401105 85401105 C T ALPK3 Missense_Mutation p.R1248C 0.23 deleterious(0) probably_damaging(0.964) TCGA-85-8354-01 15 86125318 86125318 A T AKAP13 Missense_Mutation p.Q1340L 0.27 tolerated_low_confidence(0.15) benign(0.023) TCGA-85-8354-01 15 86312903 86312903 C T KLHL25 Missense_Mutation p.D47N 0.41 deleterious(0) probably_damaging(0.997) TCGA-85-8354-01 16 19726026 19726026 C A KNOP1 Missense_Mutation p.S111I 0.22 tolerated(0.1) benign(0.026) TCGA-85-8354-01 16 26147608 26147608 G T HS3ST4 3'UTR 0.38 TCGA-85-8354-01 16 30004608 30004608 C G HIRIP3 Missense_Mutation p.D531H 0.32 deleterious(0) possibly_damaging(0.534) TCGA-85-8354-01 16 30004822 30004822 C T HIRIP3 Missense_Mutation p.E489K 0.29 deleterious(0) probably_damaging(0.998) TCGA-85-8354-01 16 30004863 30004863 C G HIRIP3 Missense_Mutation p.G475A 0.26 tolerated(0.12) benign(0) TCGA-85-8354-01 16 332710 332710 G A ARHGDIG Missense_Mutation p.V192M 0.33 deleterious(0.02) possibly_damaging(0.863) TCGA-85-8354-01 16 67404893 67404893 C T LRRC36 Silent p.V414V 0.48 TCGA-85-8354-01 16 67514927 67514927 G C ATP6V0D1 Silent p.R21R 0.25 TCGA-85-8354-01 16 70162908 70162908 G A PDPR Missense_Mutation p.E164K 0.28 tolerated(0.69) benign(0.01) TCGA-85-8354-01 16 72831632 72831632 G C ZFHX3 Missense_Mutation p.S1650C 0.27 possibly_damaging(0.85) TCGA-85-8354-01 16 74372776 74372776 C G RP11-252A24.2 RNA 0.23 TCGA-85-8354-01 16 74372788 74372788 C T RP11-252A24.2 RNA 0.26 TCGA-85-8354-01 16 76350369 76350369 G A CNTNAP4 Missense_Mutation p.E24K 0.38 tolerated(0.08) probably_damaging(0.93) TCGA-85-8354-01 16 787218 787218 C G NARFL Missense_Mutation p.E92Q 0.25 tolerated(0.1) benign(0.072) TCGA-85-8354-01 16 85138932 85138932 C A FAM92B Splice_Site p.X179_splice 0.37 TCGA-85-8354-01 17 10322285 10322285 C G MYH8 Missense_Mutation p.E91D 0.21 deleterious(0.01) possibly_damaging(0.537) TCGA-85-8354-01 17 21731158 21731158 C A UBBP4 Missense_Mutation p.Q154K 0.44 tolerated(0.12) probably_damaging(0.994) TCGA-85-8354-01 17 21731357 21731357 C T UBBP4 Intron 0.58 TCGA-85-8354-01 17 26655615 26655615 T G IFT20 3'UTR 0.38 TCGA-85-8354-01 17 3801109 3801109 C G P2RX1 Nonstop_Mutation p.*400Sext*7 0.33 TCGA-85-8354-01 17 40970294 40970294 C G BECN1 Missense_Mutation p.E210Q 0.40 tolerated(0.26) benign(0.016) TCGA-85-8354-01 17 43307992 43307992 G C FMNL1 Missense_Mutation p.D51H 0.12 deleterious(0) unknown(0) TCGA-85-8354-01 17 43321353 43321353 C T FMNL1 Silent p.F803F 0.40 TCGA-85-8354-01 17 48191730 48191730 C G SAMD14 Missense_Mutation p.Q299H 0.34 tolerated(0.41) benign(0.143) TCGA-85-8354-01 17 5436150 5436150 G A NLRP1 Silent p.N1096N 0.31 TCGA-85-8354-01 17 62018805 62018805 C T SCN4A Missense_Mutation p.G1613S 0.45 tolerated(1) benign(0.002) TCGA-85-8354-01 17 71232782 71232782 G C C17orf80 Missense_Mutation p.K387N 0.40 deleterious(0) benign(0.031) TCGA-85-8354-01 17 71232834 71232834 G C C17orf80 Missense_Mutation p.E405Q 0.42 tolerated(0.13) possibly_damaging(0.895) TCGA-85-8354-01 17 74869004 74869004 C G MGAT5B Missense_Mutation p.A58G 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.749) TCGA-85-8354-01 17 7576851 7576851 A C TP53 Splice_Site p.X331_splice 0.81 TCGA-85-8354-01 17 77918778 77918778 G C TBC1D16 Missense_Mutation p.L613V 0.44 deleterious(0.02) probably_damaging(0.999) TCGA-85-8354-01 17 916347 916347 C T ABR Missense_Mutation p.G617R 0.25 tolerated(0.17) benign(0.055) TCGA-85-8354-01 18 29046704 29046704 C T DSG3 Silent p.I541I 0.24 TCGA-85-8354-01 18 29795137 29795137 G A MEP1B Missense_Mutation p.G558R 0.91 deleterious(0.01) probably_damaging(1) TCGA-85-8354-01 18 30846957 30846957 C A CCDC178 Missense_Mutation p.L444F 0.20 tolerated(0.16) benign(0.006) TCGA-85-8354-01 18 39609356 39609356 T C PIK3C3 Missense_Mutation p.V553A 0.71 tolerated(0.28) possibly_damaging(0.753) TCGA-85-8354-01 18 43526693 43526693 C T EPG5 Missense_Mutation p.R538Q 0.24 tolerated(0.41) benign(0) TCGA-85-8354-01 18 50278687 50278687 G C DCC Missense_Mutation p.A119P 0.17 deleterious(0) probably_damaging(0.998) TCGA-85-8354-01 18 52604161 52604161 G A CCDC68 Missense_Mutation p.A125V 0.67 tolerated(0.06) benign(0.082) TCGA-85-8354-01 18 56247499 56247499 T A ALPK2 Missense_Mutation p.H170L 0.62 tolerated(0.65) benign(0.024) TCGA-85-8354-01 18 6961642 6961642 G C LAMA1 Missense_Mutation p.I2523M 0.43 deleterious(0) probably_damaging(0.934) TCGA-85-8354-01 18 70502461 70502461 C T NETO1 Intron 0.67 TCGA-85-8354-01 18 8825177 8825177 G A SOGA2 Silent p.P1223P 0.10 TCGA-85-8354-01 19 10222271 10222271 G T P2RY11 5'UTR 0.44 TCGA-85-8354-01 19 10610361 10610361 C T KEAP1 Missense_Mutation p.E117K 0.54 deleterious(0) probably_damaging(0.999) TCGA-85-8354-01 19 16222542 16222542 C G RAB8A 5'UTR 0.18 TCGA-85-8354-01 19 16594854 16594854 G A CALR3 Nonsense_Mutation p.Q189* 0.10 TCGA-85-8354-01 19 18572394 18572394 G T ELL Silent p.L246L 0.15 TCGA-85-8354-01 19 20736592 20736592 C A ZNF737 Missense_Mutation p.W18L 0.15 deleterious(0) probably_damaging(0.998) TCGA-85-8354-01 19 21366371 21366371 A G ZNF431 Missense_Mutation p.H422R 0.35 deleterious(0) probably_damaging(0.995) TCGA-85-8354-01 19 21934272 21934272 C T ZNF100 Intron 0.16 TCGA-85-8354-01 19 21934280 21934280 C T ZNF100 Intron 0.14 TCGA-85-8354-01 19 21934387 21934387 T C ZNF100 Intron 0.13 TCGA-85-8354-01 19 21934472 21934472 T C ZNF100 Intron 0.23 TCGA-85-8354-01 19 2216310 2216310 C T DOT1L Missense_Mutation p.R652W 0.32 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-85-8354-01 19 35850636 35850636 G C FFAR3 Missense_Mutation p.G282R 0.14 tolerated(0.15) benign(0.003) TCGA-85-8354-01 19 35850637 35850637 G A FFAR3 Missense_Mutation p.G282E 0.14 tolerated(0.1) benign(0.003) TCGA-85-8354-01 19 37967285 37967285 G - ZNF570 Frame_Shift_Del p.G69Efs*7 0.27 TCGA-85-8354-01 19 47503591 47503591 C T ARHGAP35 Silent p.V1382V 0.52 TCGA-85-8354-01 19 47978690 47978690 C T KPTN Missense_Mutation p.E432K 0.65 tolerated_low_confidence(0.07) benign(0.224) TCGA-85-8354-01 19 5286176 5286191 GCCCTGGAGGGGGATG - PTPRS 5'UTR 0.36 TCGA-85-8354-01 19 58232395 58232395 G T ZNF671 Silent p.I353I 0.44 TCGA-85-8354-01 19 58371364 58371364 C T ZNF587 Silent p.S528S 0.33 TCGA-85-8354-01 19 7593740 7593740 C T MCOLN1 Missense_Mutation p.R340W 0.25 deleterious(0.01) benign(0.006) TCGA-85-8354-01 19 7916424 7916424 C A EVI5L Silent p.L286L 0.24 TCGA-85-8354-01 19 9085312 9085312 C T MUC16 Missense_Mutation p.S2168N 0.24 unknown(0) TCGA-85-8354-01 1 100327871 100327871 G C AGL Missense_Mutation p.D118H 0.11 tolerated(0.12) benign(0.009) TCGA-85-8354-01 1 110050064 110050064 T C AMIGO1 Missense_Mutation p.I491V 0.26 tolerated(0.24) possibly_damaging(0.527) TCGA-85-8354-01 1 146727556 146727556 T A CHD1L Missense_Mutation p.F146I 0.25 deleterious(0.04) possibly_damaging(0.665) TCGA-85-8354-01 1 151339348 151339348 C T SELENBP1 Missense_Mutation p.E172K 0.37 tolerated(0.15) benign(0.068) TCGA-85-8354-01 1 152286027 152286027 C G FLG Silent p.L445L 0.49 TCGA-85-8354-01 1 160104341 160104341 C G ATP1A2 Nonsense_Mutation p.S632* 0.21 TCGA-85-8354-01 1 160461058 160461058 G T SLAMF6 Missense_Mutation p.A168D 0.38 tolerated(0.13) probably_damaging(0.924) TCGA-85-8354-01 1 16475402 16475402 G C EPHA2 Silent p.L98L 0.48 TCGA-85-8354-01 1 168550348 168550348 G C XCL1 Missense_Mutation p.D79H 0.20 tolerated(0.1) possibly_damaging(0.744) TCGA-85-8354-01 1 168550371 168550371 G C XCL1 Missense_Mutation p.R86S 0.22 tolerated(0.53) benign(0.003) TCGA-85-8354-01 1 186086243 186086243 C G HMCN1 Silent p.V3893V 0.57 TCGA-85-8354-01 1 19464667 19464667 G A UBR4 Missense_Mutation p.R2914W 0.29 probably_damaging(0.992) TCGA-85-8354-01 1 196799712 196799712 T A CFHR1 Silent p.A230A 0.05 TCGA-85-8354-01 1 197390127 197390127 C T CRB1 Intron 0.22 TCGA-85-8354-01 1 208073169 208073169 T C CD34 Missense_Mutation p.T87A 0.19 tolerated(0.07) benign(0.017) TCGA-85-8354-01 1 211526710 211526710 C G TRAF5 Nonsense_Mutation p.Y43* 0.18 TCGA-85-8354-01 1 221057917 221057917 C T HLX Silent p.S446S 0.13 TCGA-85-8354-01 1 223116456 223116456 C A DISP1 Missense_Mutation p.H97Q 0.23 tolerated(0.6) benign(0.004) TCGA-85-8354-01 1 244715998 244715998 T - C1orf101 Frame_Shift_Del p.L305Ffs*3 0.19 TCGA-85-8354-01 1 246923309 246923309 G C SCCPDH Missense_Mutation p.K288N 0.55 tolerated(0.31) possibly_damaging(0.86) TCGA-85-8354-01 1 247588380 247588380 C T NLRP3 Silent p.N545N 0.53 TCGA-85-8354-01 1 247875495 247875495 G T OR6F1 Missense_Mutation p.A188D 0.53 deleterious(0) possibly_damaging(0.776) TCGA-85-8354-01 1 32650184 32650184 G C TXLNA Missense_Mutation p.K188N 0.16 deleterious(0) probably_damaging(0.956) TCGA-85-8354-01 1 32650194 32650194 C G TXLNA Missense_Mutation p.L192V 0.15 deleterious(0.04) possibly_damaging(0.73) TCGA-85-8354-01 1 33065889 33065889 T A ZBTB8A Missense_Mutation p.W399R 0.32 probably_damaging(0.94) TCGA-85-8354-01 1 33237572 33237572 A T KIAA1522 Missense_Mutation p.H931L 0.60 tolerated(0.07) probably_damaging(0.981) TCGA-85-8354-01 1 35454494 35454494 G C ZMYM6 Missense_Mutation p.S730C 0.21 deleterious(0) possibly_damaging(0.778) TCGA-85-8354-01 1 44415400 44415400 C G IPO13 Silent p.L132L 0.17 TCGA-85-8354-01 1 78098631 78098631 T C ZZZ3 Missense_Mutation p.I137V 0.55 tolerated_low_confidence(1) benign(0) TCGA-85-8354-01 20 10032343 10032343 G T ANKEF1 Missense_Mutation p.W559L 0.31 deleterious(0.02) benign(0.255) TCGA-85-8354-01 20 10032344 10032344 G T ANKEF1 Missense_Mutation p.W559C 0.31 deleterious(0) probably_damaging(0.988) TCGA-85-8354-01 20 34084542 34084542 C T CEP250 Nonsense_Mutation p.Q1102* 0.49 TCGA-85-8354-01 20 400245 400245 C T RBCK1 Missense_Mutation p.T209M 0.16 deleterious(0) possibly_damaging(0.892) TCGA-85-8354-01 20 46313228 46313228 G A SULF2 Missense_Mutation p.L279F 0.40 deleterious(0) probably_damaging(0.998) TCGA-85-8354-01 20 58490557 58490557 G A SYCP2 Missense_Mutation p.R188W 0.41 deleterious(0) probably_damaging(0.994) TCGA-85-8354-01 21 47974087 47974087 C T DIP2A Silent p.T1012T 0.36 TCGA-85-8354-01 22 17264996 17264996 G A XKR3 Missense_Mutation p.S298F 0.12 tolerated(1) probably_damaging(0.951) TCGA-85-8354-01 22 29737743 29737744 - T AP1B1 Frame_Shift_Ins p.D515Rfs*2 0.16 TCGA-85-8354-01 22 31924850 31924850 G A SFI1 Splice_Site p.X89_splice 0.43 TCGA-85-8354-01 22 31998624 31998624 A G SFI1 Missense_Mutation p.Y553C 0.27 tolerated(0.25) benign(0.001) TCGA-85-8354-01 22 42972057 42972058 GC T SERHL2 3'Flank 0.14 TCGA-85-8354-01 2 108604655 108604655 A G SLC5A7 Missense_Mutation p.Y15C 0.24 deleterious(0) probably_damaging(0.998) TCGA-85-8354-01 2 125530493 125530493 T A CNTNAP5 Missense_Mutation p.L883H 0.40 deleterious(0) probably_damaging(0.969) TCGA-85-8354-01 2 128880777 128880777 C T UGGT1 Missense_Mutation p.A364V 0.41 tolerated(0.49) benign(0.001) TCGA-85-8354-01 2 166903355 166903355 C A SCN1A Missense_Mutation p.L434F 0.40 deleterious(0.01) benign(0.132) TCGA-85-8354-01 2 178096464 178096464 G T NFE2L2 Missense_Mutation p.F289L 0.38 tolerated(0.3) benign(0.024) TCGA-85-8354-01 2 178097249 178097249 G C NFE2L2 Silent p.V155V 0.47 TCGA-85-8354-01 2 179472568 179472568 G T TTN Missense_Mutation p.A17649D 0.32 TCGA-85-8354-01 2 179588379 179588379 G T TTN Missense_Mutation p.P7150T 0.45 TCGA-85-8354-01 2 179598167 179598167 C A TTN Missense_Mutation p.A5285S 0.40 TCGA-85-8354-01 2 180810027 180810027 T G CWC22 Silent p.S852S 0.50 TCGA-85-8354-01 2 185802343 185802343 T A ZNF804A Silent p.V740V 0.14 TCGA-85-8354-01 2 185802344 185802344 C A ZNF804A Missense_Mutation p.L741I 0.13 tolerated(0.4) probably_damaging(0.952) TCGA-85-8354-01 2 185803696 185803696 C T ZNF804A Silent p.L1191L 0.45 TCGA-85-8354-01 2 196581366 196581366 G A SLC39A10 Missense_Mutation p.D568N 0.48 deleterious(0.02) benign(0.178) TCGA-85-8354-01 2 204599572 204599572 G A CD28 Silent p.G200G 0.35 TCGA-85-8354-01 2 239157852 239157852 T C PER2 Missense_Mutation p.N1157D 0.41 tolerated(1) benign(0.007) TCGA-85-8354-01 2 28531007 28531007 A G BRE Intron 0.48 TCGA-85-8354-01 2 37255917 37255917 G C HEATR5B Missense_Mutation p.H1170D 0.41 deleterious(0.01) benign(0.122) TCGA-85-8354-01 2 39222396 39222396 C T SOS1 Missense_Mutation p.E1072K 0.41 tolerated(0.12) possibly_damaging(0.777) TCGA-85-8354-01 2 54133745 54133745 G A PSME4 Missense_Mutation p.S978L 0.46 tolerated(0.13) benign(0.01) TCGA-85-8354-01 2 55435776 55435776 A C CLHC1 Silent p.L295L 0.22 TCGA-85-8354-01 2 55920814 55920814 C A PNPT1 Missense_Mutation p.V49L 0.19 tolerated(0.06) benign(0.055) TCGA-85-8354-01 2 73680087 73680087 C T ALMS1 Nonsense_Mutation p.R2144* 0.13 TCGA-85-8354-01 2 8822189 8822189 C T ID2 5'UTR 0.40 TCGA-85-8354-01 3 126739106 126739106 C A PLXNA1 Silent p.I1319I 0.52 TCGA-85-8354-01 3 142030512 142030512 C T XRN1 Silent p.L1654L 0.58 TCGA-85-8354-01 3 148596447 148596447 C A CPA3 Missense_Mutation p.T129N 0.12 deleterious(0.01) probably_damaging(0.968) TCGA-85-8354-01 3 148927114 148927114 G C CP Missense_Mutation p.S222C 0.11 deleterious(0) probably_damaging(0.984) TCGA-85-8354-01 3 154002750 154002750 C T DHX36 Silent p.L686L 0.15 TCGA-85-8354-01 3 160804565 160804565 G A B3GALNT1 5'UTR 0.07 TCGA-85-8354-01 3 161214620 161214620 G A OTOL1 Missense_Mutation p.A9T 0.13 tolerated(0.26) unknown(0) TCGA-85-8354-01 3 170906561 170906561 C G TNIK Missense_Mutation p.G190A 0.31 deleterious(0) unknown(0) TCGA-85-8354-01 3 179519492 179519492 G T PEX5L 3'UTR 0.78 TCGA-85-8354-01 3 189838395 189838395 C T LEPREL1 Silent p.Q42Q 0.82 TCGA-85-8354-01 3 33704966 33704966 G T CLASP2 Nonsense_Mutation p.S229* 0.13 TCGA-85-8354-01 3 50144254 50144254 G C RBM5 Missense_Mutation p.D304H 0.78 deleterious(0) possibly_damaging(0.613) TCGA-85-8354-01 3 52258297 52258297 G C TLR9 Missense_Mutation p.S166C 0.29 deleterious(0.01) benign(0.022) TCGA-85-8354-01 3 62118333 62118333 G C PTPRG Missense_Mutation p.V225L 0.68 tolerated(0.14) benign(0.221) TCGA-85-8354-01 3 62535751 62535751 T C CADPS Missense_Mutation p.E598G 0.71 deleterious(0) benign(0.442) TCGA-85-8354-01 3 62570932 62570932 T A CADPS Missense_Mutation p.N502I 0.76 deleterious(0) possibly_damaging(0.703) TCGA-85-8354-01 3 62648004 62648004 T C CADPS Silent p.A318A 0.35 TCGA-85-8354-01 3 7188357 7188357 T A GRM7 Splice_Site p.X246_splice 0.36 TCGA-85-8354-01 3 9934671 9934671 G C JAGN1 Missense_Mutation p.K54N 0.57 deleterious(0.01) benign(0.09) TCGA-85-8354-01 4 104510823 104510823 A G TACR3 3'UTR 0.16 TCGA-85-8354-01 4 121961135 121961135 C A NDNF Missense_Mutation p.W88L 0.46 deleterious(0) probably_damaging(0.995) TCGA-85-8354-01 4 153251924 153251938 ATTCTGTGCTGTCTG - FBXW7 In_Frame_Del p.R357_I361del 0.75 TCGA-85-8354-01 4 16504149 16504149 A G LDB2 3'UTR 0.51 TCGA-85-8354-01 4 177084417 177084417 C T WDR17 Missense_Mutation p.A1012V 0.51 tolerated(0.11) probably_damaging(0.995) TCGA-85-8354-01 4 4862074 4862074 C T MSX1 Missense_Mutation p.R150C 0.68 deleterious(0.03) possibly_damaging(0.894) TCGA-85-8354-01 4 72338690 72338690 G A SLC4A4 Intron 0.35 TCGA-85-8354-01 4 83956394 83956394 G C COPS4 Missense_Mutation p.R6P 0.19 deleterious(0.01) probably_damaging(0.947) TCGA-85-8354-01 5 1214086 1214087 - CGT SLC6A19 In_Frame_Ins p.P265_D266insS 0.53 TCGA-85-8354-01 5 1294719 1294719 C T TERT Silent p.K94K 0.29 TCGA-85-8354-01 5 140389264 140389264 C T PCDHAC1 Silent p.N878N 0.30 TCGA-85-8354-01 5 140603514 140603514 C A PCDHB14 Missense_Mutation p.T146N 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.905) TCGA-85-8354-01 5 146257661 146257661 C T PPP2R2B Intron 0.32 TCGA-85-8354-01 5 16670983 16670983 G T MYO10 Missense_Mutation p.H1845Q 0.57 tolerated(0.38) benign(0.004) TCGA-85-8354-01 5 176883007 176883007 G A PRR7 Missense_Mutation p.R237H 0.38 deleterious(0.03) possibly_damaging(0.662) TCGA-85-8354-01 5 179440239 179440239 T - RNF130 Frame_Shift_Del p.N172Tfs*6 0.32 TCGA-85-8354-01 5 19838947 19838947 C A CDH18 Missense_Mutation p.R50L 0.22 deleterious(0) probably_damaging(0.972) TCGA-85-8354-01 5 22078599 22078600 - A CDH12 Frame_Shift_Ins p.V63Cfs*43 0.41 TCGA-85-8354-01 5 23526975 23526975 C T PRDM9 Missense_Mutation p.S593L 0.27 deleterious(0) probably_damaging(0.997) TCGA-85-8354-01 5 23527009 23527009 G T PRDM9 Silent p.G604G 0.21 TCGA-85-8354-01 5 24487881 24487881 G A CDH10 Missense_Mutation p.S753L 0.29 deleterious(0.01) probably_damaging(0.966) TCGA-85-8354-01 5 41917271 41917271 A G C5orf51 Missense_Mutation p.D252G 0.51 deleterious(0.02) probably_damaging(0.979) TCGA-85-8354-01 5 50680439 50680439 G T ISL1 Missense_Mutation p.R31S 0.31 deleterious(0) probably_damaging(0.938) TCGA-85-8354-01 5 75979705 75979705 G A IQGAP2 Missense_Mutation p.D1290N 0.30 tolerated(0.09) possibly_damaging(0.597) TCGA-85-8354-01 5 78596625 78596625 G A JMY Missense_Mutation p.R607H 0.21 deleterious(0.03) probably_damaging(0.999) TCGA-85-8354-01 6 117198984 117198984 T C RFX6 Silent p.F83F 0.49 TCGA-85-8354-01 6 152748930 152748930 G T SYNE1 Silent p.S1666S 0.37 TCGA-85-8354-01 6 26200068 26200068 G C HIST1H2BF Missense_Mutation p.E94D 0.39 deleterious_low_confidence(0.02) benign(0.194) TCGA-85-8354-01 6 43021842 43021842 C T MRPL2 3'UTR 0.29 TCGA-85-8354-01 6 46656263 46656263 G T TDRD6 Missense_Mutation p.G133V 0.42 deleterious(0) possibly_damaging(0.875) TCGA-85-8354-01 6 46826636 46826636 G C GPR116 Missense_Mutation p.P1002A 0.36 deleterious(0.03) possibly_damaging(0.692) TCGA-85-8354-01 6 4892485 4892485 G T CDYL Missense_Mutation p.G188V 0.62 deleterious(0.02) possibly_damaging(0.802) TCGA-85-8354-01 6 51523893 51523893 C A PKHD1 Missense_Mutation p.M3677I 0.30 tolerated(0.28) benign(0.001) TCGA-85-8354-01 6 74104677 74104693 AGTCGGCGAAGCTCGAC - DDX43 Frame_Shift_Del p.R18Vfs*18 0.21 TCGA-85-8354-01 6 75834025 75834025 A G COL12A1 Missense_Mutation p.W2224R 0.46 probably_damaging(0.999) TCGA-85-8354-01 7 100034024 100034024 G A PPP1R35 5'UTR 0.58 TCGA-85-8354-01 7 102738964 102738964 G A ARMC10 Silent p.V332V 0.29 TCGA-85-8354-01 7 107434832 107434832 C A SLC26A3 Silent p.V41V 0.25 TCGA-85-8354-01 7 129497353 129497353 T C UBE2H Missense_Mutation p.Y99C 0.13 deleterious(0) possibly_damaging(0.56) TCGA-85-8354-01 7 141752226 141752226 G T MGAM Missense_Mutation p.A980S 0.70 tolerated(0.32) benign(0.027) TCGA-85-8354-01 7 142181007 142181007 C T TRBV6-5 5'UTR 0.36 TCGA-85-8354-01 7 14378176 14378176 C T DGKB Missense_Mutation p.V697I 0.36 tolerated(0.87) benign(0.106) TCGA-85-8354-01 7 150325105 150325105 C T GIMAP6 Missense_Mutation p.R194Q 0.25 tolerated(0.12) benign(0.345) TCGA-85-8354-01 7 29152381 29152381 C T CPVL Missense_Mutation p.G76D 0.58 deleterious(0) probably_damaging(1) TCGA-85-8354-01 7 4185545 4185545 A G SDK1 Missense_Mutation p.R1474G 0.33 deleterious(0.02) probably_damaging(0.965) TCGA-85-8354-01 7 45717579 45717579 T C ADCY1 Silent p.L573L 0.10 TCGA-85-8354-01 7 47440460 47440460 G A TNS3 Missense_Mutation p.R259C 0.11 deleterious(0) probably_damaging(0.994) TCGA-85-8354-01 7 73098202 73098202 C G WBSCR22 Intron 0.29 TCGA-85-8354-01 7 796507 796507 C T HEATR2 Missense_Mutation p.S449F 0.38 tolerated(0.14) possibly_damaging(0.753) TCGA-85-8354-01 7 84671583 84671583 G C SEMA3D Missense_Mutation p.R294G 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-85-8354-01 7 87564410 87564410 C T ADAM22 Missense_Mutation p.P52L 0.20 deleterious(0) probably_damaging(0.992) TCGA-85-8354-01 7 87913330 87913330 A G STEAP4 Silent p.H85H 0.32 TCGA-85-8354-01 8 100994224 100994224 C G RGS22 Missense_Mutation p.A1101P 0.47 deleterious(0) probably_damaging(1) TCGA-85-8354-01 8 119122902 119122902 G A EXT1 Silent p.A128A 0.52 TCGA-85-8354-01 8 126379261 126379261 T C NSMCE2 3'UTR 0.50 TCGA-85-8354-01 8 139164693 139164693 G T FAM135B Silent p.V675V 0.51 TCGA-85-8354-01 8 144462074 144462074 A G RHPN1 Missense_Mutation p.T341A 0.64 tolerated(0.61) benign(0.013) TCGA-85-8354-01 8 144671229 144671229 G A EEF1D Silent p.L341L 0.68 TCGA-85-8354-01 8 27845037 27845037 C T SCARA5 Silent p.L32L 0.78 TCGA-85-8354-01 8 51442777 51442777 C G SNTG1 Silent p.L169L 0.25 TCGA-85-8354-01 8 75262648 75262648 G A GDAP1 5'UTR 0.23 TCGA-85-8354-01 8 77618043 77618043 C A ZFHX4 Missense_Mutation p.P574T 0.35 benign(0.002) TCGA-85-8354-01 8 87414271 87414271 G T WWP1 Missense_Mutation p.G188V 0.28 tolerated(0.16) possibly_damaging(0.613) TCGA-85-8354-01 8 92998434 92998434 G T RUNX1T1 Silent p.A410A 0.55 TCGA-85-8354-01 9 138376934 138376934 G T PPP1R26 Missense_Mutation p.G193V 0.62 tolerated(0.33) probably_damaging(0.988) TCGA-85-8354-01 9 21201490 21201490 T G IFNA7 3'UTR 0.47 TCGA-85-8354-01 9 21854734 21854734 G T MTAP Missense_Mutation p.M185I 0.86 tolerated(0.26) benign(0.004) TCGA-85-8354-01 9 43626719 43626719 C T SPATA31A6 Silent p.K656K 0.74 TCGA-85-8354-01 9 79842309 79842309 C G VPS13A Missense_Mutation p.L454V 0.50 deleterious(0.02) possibly_damaging(0.507) TCGA-85-8354-01 X 119694203 119694203 T C CUL4B Missense_Mutation p.I115M 0.86 tolerated_low_confidence(0.05) benign(0.08) TCGA-85-8354-01 X 140996320 140996320 C A MAGEC1 Missense_Mutation p.L1044I 0.88 tolerated(0.26) unknown(0) TCGA-85-8354-01 X 18209224 18209224 A T BEND2 Silent p.S395S 0.84 TCGA-85-8354-01 X 26212120 26212120 C T MAGEB6 Missense_Mutation p.R53C 0.74 deleterious(0.04) possibly_damaging(0.871) TCGA-85-8354-01 X 30269225 30269225 G C MAGEB1 Silent p.L205L 0.44 TCGA-85-8354-01 X 47306737 47306737 C G ZNF41 3'UTR 0.69 TCGA-85-8354-01 X 47306738 47306738 C A ZNF41 3'UTR 0.71 TCGA-85-8354-01 X 65486349 65486349 T C HEPH Silent p.N1158N 0.86 TCGA-85-8355-01 10 12866541 12866541 G A CAMK1D Missense_Mutation p.S304N 0.06 deleterious(0.03) benign(0.001) TCGA-85-8355-01 10 133107553 133107553 C T TCERG1L Missense_Mutation p.G118S 0.06 tolerated_low_confidence(0.07) benign(0.362) TCGA-85-8355-01 10 17891669 17891669 C A MRC1L1 Missense_Mutation p.Q384K 0.09 possibly_damaging(0.519) TCGA-85-8355-01 10 17949610 17949610 C A MRC1L1 Missense_Mutation p.P1325H 0.13 probably_damaging(0.997) TCGA-85-8355-01 10 22030867 22030867 G T MLLT10 Splice_Site p.X1055_splice 0.12 TCGA-85-8355-01 10 25839933 25839933 C G GPR158 Missense_Mutation p.T478R 0.11 deleterious(0.01) benign(0.081) TCGA-85-8355-01 10 25887164 25887164 C G GPR158 Missense_Mutation p.T870R 0.08 deleterious(0.02) possibly_damaging(0.575) TCGA-85-8355-01 10 37422929 37422929 G T ANKRD30A Missense_Mutation p.D179Y 0.14 deleterious(0) probably_damaging(0.988) TCGA-85-8355-01 10 45939188 45939188 C T ALOX5 Missense_Mutation p.S529L 0.17 tolerated(0.17) benign(0.047) TCGA-85-8355-01 10 56077121 56077121 A T PCDH15 Silent p.G262G 0.11 TCGA-85-8355-01 10 96466666 96466666 C G CYP2C18 Missense_Mutation p.D256E 0.14 deleterious(0.02) benign(0.083) TCGA-85-8355-01 11 1017061 1017061 T C MUC6 Missense_Mutation p.T1914A 0.03 probably_damaging(0.931) TCGA-85-8355-01 11 105880265 105880265 C T MSANTD4 Silent p.Q345Q 0.04 TCGA-85-8355-01 11 114401244 114401244 G T NXPE1 Silent p.G20G 0.18 TCGA-85-8355-01 11 20124872 20124872 C T NAV2 Silent p.L2222L 0.06 TCGA-85-8355-01 11 22747969 22747969 G - GAS2 Frame_Shift_Del p.E134Kfs*17 0.10 TCGA-85-8355-01 11 33596266 33596266 G A KIAA1549L Missense_Mutation p.V1120I 0.11 tolerated(0.23) probably_damaging(0.996) TCGA-85-8355-01 11 4825676 4825676 A T OR52R1 5'Flank 0.08 TCGA-85-8355-01 11 4869539 4869539 A T OR51S1 Missense_Mutation p.S300R 0.08 deleterious(0.01) benign(0.063) TCGA-85-8355-01 11 56043337 56043337 C A OR5T1 Missense_Mutation p.L75I 0.08 deleterious(0.03) benign(0.106) TCGA-85-8355-01 11 56408987 56408987 A T OR5AP2 Missense_Mutation p.I310N 0.06 deleterious(0.02) benign(0.043) TCGA-85-8355-01 11 59224607 59224607 T A OR4D6 Silent p.P58P 0.14 TCGA-85-8355-01 11 59608654 59608654 T C GIF Missense_Mutation p.I219V 0.06 tolerated(0.2) benign(0.052) TCGA-85-8355-01 11 66333611 66333611 T A CTSF Missense_Mutation p.N250I 0.09 deleterious(0) probably_damaging(0.999) TCGA-85-8355-01 11 66618606 66618606 C A PC Missense_Mutation p.V710L 0.10 tolerated(0.12) benign(0.295) TCGA-85-8355-01 11 72945690 72945690 G T P2RY2 Silent p.L162L 0.11 TCGA-85-8355-01 11 73141800 73141800 T C FAM168A Missense_Mutation p.Y29C 0.15 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-85-8355-01 11 76507106 76507106 C T TSKU Missense_Mutation p.S149F 0.08 deleterious(0.01) possibly_damaging(0.529) TCGA-85-8355-01 11 77043854 77043854 G A PAK1 Missense_Mutation p.S491L 0.11 deleterious(0) possibly_damaging(0.746) TCGA-85-8355-01 11 78387383 78387383 C A TENM4 Silent p.L1770L 0.11 TCGA-85-8355-01 11 83962326 83962326 A T DLG2 Silent p.P176P 0.07 TCGA-85-8355-01 11 92088319 92088319 A G FAT3 Missense_Mutation p.D1014G 0.16 probably_damaging(1) TCGA-85-8355-01 12 101720961 101720964 CCAA - UTP20 Frame_Shift_Del p.Q1049Lfs*8 0.15 TCGA-85-8355-01 12 103246660 103246660 C A PAH Missense_Mutation p.A259S 0.13 deleterious(0) probably_damaging(0.957) TCGA-85-8355-01 12 103246661 103246661 C G PAH Silent p.L258L 0.12 TCGA-85-8355-01 12 103246662 103246662 A G PAH Missense_Mutation p.L258P 0.12 deleterious(0) probably_damaging(1) TCGA-85-8355-01 12 104076986 104076986 G T STAB2 Nonsense_Mutation p.E937* 0.11 TCGA-85-8355-01 12 106717364 106717364 C T TCP11L2 Nonsense_Mutation p.Q238* 0.14 TCGA-85-8355-01 12 10961917 10961917 G A TAS2R9 Missense_Mutation p.S253F 0.15 tolerated(1) possibly_damaging(0.898) TCGA-85-8355-01 12 113355543 113355543 C T OAS1 Intron 0.11 TCGA-85-8355-01 12 113645535 113645535 T G IQCD Missense_Mutation p.Q146P 0.16 deleterious(0.01) possibly_damaging(0.827) TCGA-85-8355-01 12 11506305 11506305 G C PRB1 Silent p.P111P 0.09 TCGA-85-8355-01 12 124829408 124829408 C A NCOR2 Silent p.T1483T 0.38 TCGA-85-8355-01 12 131438921 131438921 C G GPR133 5'UTR 0.14 TCGA-85-8355-01 12 13716668 13716668 G C GRIN2B Missense_Mutation p.S1168R 0.15 tolerated_low_confidence(0.38) possibly_damaging(0.504) TCGA-85-8355-01 12 14650692 14650692 G A ATF7IP Silent p.L1166L 0.13 TCGA-85-8355-01 12 21015719 21015719 C A SLCO1B3 Missense_Mutation p.P220T 0.07 deleterious(0.04) benign(0.417) TCGA-85-8355-01 12 21015720 21015720 C A SLCO1B3 Missense_Mutation p.P220Q 0.07 deleterious(0) probably_damaging(0.925) TCGA-85-8355-01 12 26634166 26634166 G A ITPR2 Silent p.I2007I 0.09 TCGA-85-8355-01 12 2929978 2929978 G C ITFG2 Missense_Mutation p.C212S 0.13 deleterious(0.02) probably_damaging(0.99) TCGA-85-8355-01 12 40634305 40634305 G A LRRK2 Missense_Mutation p.E198K 0.10 deleterious(0) probably_damaging(0.997) TCGA-85-8355-01 12 4835840 4835840 C G GALNT8 Silent p.L118L 0.23 TCGA-85-8355-01 12 49951206 49951206 C T KCNH3 Missense_Mutation p.L908F 0.09 tolerated(0.06) possibly_damaging(0.76) TCGA-85-8355-01 12 53715244 53715244 G A AAAS Silent p.C2C 0.11 TCGA-85-8355-01 12 56500849 56500849 A G RP11-603J24.9 Missense_Mutation p.Y79C 0.10 tolerated(0.17) benign(0.01) TCGA-85-8355-01 12 56748354 56748354 G A STAT2 Silent p.T226T 0.07 TCGA-85-8355-01 12 59280666 59280666 C T LRIG3 Silent p.L366L 0.12 TCGA-85-8355-01 12 644344 644344 G T B4GALNT3 Missense_Mutation p.W61L 0.07 deleterious(0) probably_damaging(0.928) TCGA-85-8355-01 12 644345 644345 G T B4GALNT3 Missense_Mutation p.W61C 0.06 deleterious(0) probably_damaging(0.99) TCGA-85-8355-01 12 69260740 69260740 C A CPM Missense_Mutation p.K292N 0.11 deleterious(0.02) benign(0.199) TCGA-85-8355-01 12 7842927 7842927 C A GDF3 Silent p.V214V 0.09 TCGA-85-8355-01 12 78516121 78516121 G T NAV3 Missense_Mutation p.G1384V 0.07 deleterious(0.02) probably_damaging(0.947) TCGA-85-8355-01 12 85677382 85677382 C A ALX1 Missense_Mutation p.P87T 0.10 tolerated(0.18) benign(0.002) TCGA-85-8355-01 12 85677383 85677383 C A ALX1 Missense_Mutation p.P87H 0.09 deleterious(0) possibly_damaging(0.533) TCGA-85-8355-01 12 89742950 89742950 A G DUSP6 3'UTR 0.14 TCGA-85-8355-01 13 101833639 101833639 G T NALCN Intron 0.09 TCGA-85-8355-01 13 101944585 101944585 C G NALCN Missense_Mutation p.W311S 0.05 deleterious(0) probably_damaging(0.999) TCGA-85-8355-01 13 107209433 107209433 T A ARGLU1 Missense_Mutation p.E207V 0.11 deleterious(0) possibly_damaging(0.607) TCGA-85-8355-01 13 46559460 46559460 C T ZC3H13 Silent p.R564R 0.17 TCGA-85-8355-01 13 53420520 53420520 G T PCDH8 Silent p.R684R 0.14 TCGA-85-8355-01 13 92345700 92345700 G T GPC5 Silent p.R195R 0.10 TCGA-85-8355-01 14 102717180 102717202 TCCACAGGTCCATCTTGTACGTG - MOK Nonsense_Mutation p.Y179* 0.33 TCGA-85-8355-01 14 105412713 105412713 G A AHNAK2 Silent p.D3025D 0.36 TCGA-85-8355-01 14 22458741 22458741 C G TRAV16 Missense_Mutation p.P3A 0.12 tolerated(0.69) benign(0.006) TCGA-85-8355-01 14 42356294 42356294 T A LRFN5 Missense_Mutation p.Y156N 0.21 deleterious(0.03) possibly_damaging(0.737) TCGA-85-8355-01 14 65259866 65259866 G A SPTB Silent p.L839L 0.17 TCGA-85-8355-01 14 65527924 65527924 T A FNTB Missense_Mutation p.I403N 0.26 deleterious(0) probably_damaging(0.996) TCGA-85-8355-01 14 70634716 70634716 C A SLC8A3 Missense_Mutation p.G142C 0.20 deleterious(0) probably_damaging(1) TCGA-85-8355-01 14 76198739 76198739 G T TTLL5 Silent p.V367V 0.25 TCGA-85-8355-01 14 90729756 90729756 A G PSMC1 Silent p.E83E 0.15 TCGA-85-8355-01 14 94391585 94391585 G A FAM181A 5'UTR 0.17 TCGA-85-8355-01 15 25331724 25331724 G A SNORD116-19 RNA 0.12 TCGA-85-8355-01 15 25481232 25481232 G A SNORD115-36 RNA 0.08 TCGA-85-8355-01 15 28506031 28506031 G C HERC2 Missense_Mutation p.N736K 0.06 possibly_damaging(0.558) TCGA-85-8355-01 15 43892829 43892829 T C STRC Silent p.Q1632Q 0.05 TCGA-85-8355-01 15 59911471 59911471 C T GCNT3 Missense_Mutation p.S345F 0.15 deleterious(0.03) benign(0.341) TCGA-85-8355-01 15 90189142 90189142 C T KIF7 Missense_Mutation p.R635Q 0.17 tolerated(0.24) benign(0.002) TCGA-85-8355-01 16 21073937 21073937 G A DNAH3 Nonsense_Mutation p.Q1196* 0.05 TCGA-85-8355-01 16 30106646 30106646 T A YPEL3 Missense_Mutation p.D53V 0.15 deleterious(0.05) benign(0.138) TCGA-85-8355-01 16 30776790 30776790 G T RNF40 Missense_Mutation p.Q321H 0.08 tolerated(0.13) benign(0.351) TCGA-85-8355-01 16 48337117 48337117 A G LONP2 Missense_Mutation p.R566G 0.13 deleterious(0) possibly_damaging(0.501) TCGA-85-8355-01 16 66974376 66974376 C T CES2 Silent p.Y262Y 0.13 TCGA-85-8355-01 16 732556 732556 A G JMJD8 3'UTR 0.15 TCGA-85-8355-01 16 77396089 77396089 C T ADAMTS18 Missense_Mutation p.G377R 0.11 deleterious(0) probably_damaging(0.997) TCGA-85-8355-01 16 921200 921200 G A LMF1 Nonsense_Mutation p.Q347* 0.16 TCGA-85-8355-01 16 9928043 9928043 G T GRIN2A Missense_Mutation p.L566I 0.17 deleterious(0) probably_damaging(0.999) TCGA-85-8355-01 17 10419860 10419860 C T MYH1 Missense_Mutation p.A34T 0.16 deleterious(0.03) possibly_damaging(0.589) TCGA-85-8355-01 17 18041493 18041493 T A MYO15A Missense_Mutation p.I1647N 0.13 unknown(0) TCGA-85-8355-01 17 27822631 27822631 G T TAOK1 Missense_Mutation p.Q295H 0.19 deleterious(0.04) benign(0.012) TCGA-85-8355-01 17 28269309 28269309 G C EFCAB5 Missense_Mutation p.E32Q 0.14 deleterious_low_confidence(0.04) possibly_damaging(0.677) TCGA-85-8355-01 17 35297737 35297737 C G LHX1 Missense_Mutation p.I107M 0.06 tolerated(0.16) possibly_damaging(0.557) TCGA-85-8355-01 17 36352457 36352457 C T RP11-1407O15.2 Missense_Mutation p.V444I 0.05 TCGA-85-8355-01 17 38122538 38122538 C T GSDMA Silent p.G80G 0.05 TCGA-85-8355-01 17 39566080 39566080 T A AC003958.2 RNA 0.09 TCGA-85-8355-01 17 40312143 40312143 C A KCNH4 Missense_Mutation p.G990V 0.11 tolerated_low_confidence(0.13) benign(0.002) TCGA-85-8355-01 17 5085367 5085367 G - ZNF594 Frame_Shift_Del p.L729Cfs*53 0.08 TCGA-85-8355-01 17 66596502 66596502 G T FAM20A Missense_Mutation p.N102K 0.23 tolerated(0.35) benign(0.005) TCGA-85-8355-01 17 72518971 72518971 C T CD300LB Nonsense_Mutation p.W208* 0.15 TCGA-85-8355-01 17 7578555 7578555 C G TP53 Splice_Site p.X126_splice 0.16 TCGA-85-8355-01 18 21116753 21116753 G A NPC1 Silent p.T1043T 0.10 TCGA-85-8355-01 18 40503710 40503710 G T RIT2 Silent p.R85R 0.10 TCGA-85-8355-01 18 46906113 46906113 C A DYM Missense_Mutation p.R70L 0.11 tolerated(0.22) possibly_damaging(0.625) TCGA-85-8355-01 18 8636263 8636263 A G RAB12 Missense_Mutation p.I177V 0.09 tolerated(0.17) benign(0.025) TCGA-85-8355-01 19 17476719 17476719 G T PLVAP Missense_Mutation p.S185R 0.11 tolerated(0.23) possibly_damaging(0.562) TCGA-85-8355-01 19 21476063 21476063 A C ZNF708 3'UTR 0.12 TCGA-85-8355-01 19 31040285 31040285 G T ZNF536 Silent p.R1253R 0.12 TCGA-85-8355-01 19 33702366 33702366 G A SLC7A10 Missense_Mutation p.T289M 0.06 deleterious(0) probably_damaging(0.988) TCGA-85-8355-01 19 34895639 34895639 C T RP11-618P17.4 Missense_Mutation p.P94L 0.11 deleterious(0) probably_damaging(0.999) TCGA-85-8355-01 19 35512741 35512741 T A GRAMD1A Missense_Mutation p.C576S 0.14 tolerated(0.57) benign(0.007) TCGA-85-8355-01 19 37879340 37879340 G - ZNF527 Frame_Shift_Del p.W130* 0.22 TCGA-85-8355-01 19 40336984 40336984 A T FBL 5'UTR 0.39 TCGA-85-8355-01 19 42474544 42474544 T C ATP1A3 Missense_Mutation p.D818G 0.09 deleterious(0) possibly_damaging(0.677) TCGA-85-8355-01 19 47823284 47823284 C T C5AR1 Missense_Mutation p.L84F 0.12 deleterious(0.04) possibly_damaging(0.889) TCGA-85-8355-01 19 53669413 53669413 T G ZNF665 Missense_Mutation p.K110N 0.12 tolerated(0.14) benign(0.02) TCGA-85-8355-01 19 57036312 57036312 T C ZNF471 Silent p.C292C 0.08 TCGA-85-8355-01 1 103381189 103381189 C T COL11A1 Missense_Mutation p.G1272S 0.15 unknown(0) TCGA-85-8355-01 1 157667094 157667094 G T FCRL3 Missense_Mutation p.S227Y 0.07 tolerated(0.15) possibly_damaging(0.861) TCGA-85-8355-01 1 157773766 157773766 G A FCRL1 Missense_Mutation p.P63L 0.06 tolerated(0.4) benign(0.015) TCGA-85-8355-01 1 158597414 158597414 C A SPTA1 Splice_Site p.X1888_splice 0.20 TCGA-85-8355-01 1 158736129 158736129 A T OR6N1 Missense_Mutation p.L115Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-85-8355-01 1 159163268 159163268 C A CADM3 Missense_Mutation p.D180E 0.16 tolerated(1) benign(0.001) TCGA-85-8355-01 1 171956915 171956915 C T DNM3 Missense_Mutation p.P119S 0.05 deleterious(0.02) probably_damaging(1) TCGA-85-8355-01 1 177250272 177250272 G T BRINP2 Missense_Mutation p.D654Y 0.08 deleterious(0.01) possibly_damaging(0.707) TCGA-85-8355-01 1 184772821 184772821 A G FAM129A Silent p.Y484Y 0.08 TCGA-85-8355-01 1 196311289 196311289 G C KCNT2 Missense_Mutation p.H491Q 0.15 deleterious(0.05) possibly_damaging(0.76) TCGA-85-8355-01 1 200960046 200960046 G A KIF21B Nonsense_Mutation p.R896* 0.26 TCGA-85-8355-01 1 201020178 201020178 C T CACNA1S Silent p.E1349E 0.04 TCGA-85-8355-01 1 201020183 201020183 C T CACNA1S Missense_Mutation p.E1348K 0.04 tolerated(0.07) benign(0) TCGA-85-8355-01 1 202249915 202249915 G C LGR6 Missense_Mutation p.L217F 0.06 deleterious(0.02) probably_damaging(1) TCGA-85-8355-01 1 207648374 207648374 T A CR2 Silent p.P843P 0.25 TCGA-85-8355-01 1 22162123 22162123 T A HSPG2 Missense_Mutation p.N3455Y 0.14 probably_damaging(0.994) TCGA-85-8355-01 1 228525672 228525672 G A OBSCN Missense_Mutation p.D6567N 0.19 benign(0.23) TCGA-85-8355-01 1 2303926 2303926 C A MORN1 Missense_Mutation p.A247S 0.15 tolerated(0.07) possibly_damaging(0.677) TCGA-85-8355-01 1 237777343 237777343 G A RYR2 Missense_Mutation p.V1639I 0.21 benign(0.001) TCGA-85-8355-01 1 247597487 247597487 G T NLRP3 Missense_Mutation p.D804Y 0.05 tolerated(0.09) probably_damaging(0.981) TCGA-85-8355-01 1 248004886 248004886 C T OR11L1 Missense_Mutation p.V105I 0.09 tolerated(0.92) benign(0.163) TCGA-85-8355-01 1 248343973 248343973 G T OR2M2 Missense_Mutation p.G229V 0.10 tolerated(0.16) benign(0.314) TCGA-85-8355-01 1 248685747 248685747 C G OR2G6 Missense_Mutation p.S267C 0.06 deleterious(0) benign(0.159) TCGA-85-8355-01 1 248757060 248757060 C T OR2T10 Missense_Mutation p.A4T 0.15 tolerated(0.47) benign(0.009) TCGA-85-8355-01 1 26142291 26142291 C A SEPN1 3'UTR 0.20 TCGA-85-8355-01 1 27100075 27100075 G T ARID1A Nonsense_Mutation p.E1291* 0.14 TCGA-85-8355-01 1 29189345 29189345 G A OPRD1 Silent p.V223V 0.06 TCGA-85-8355-01 1 52827220 52827220 C T CC2D1B Missense_Mutation p.E95K 0.30 tolerated(0.13) benign(0.309) TCGA-85-8355-01 1 55590162 55590162 C A USP24 Missense_Mutation p.R1367L 0.07 deleterious(0.03) probably_damaging(0.977) TCGA-85-8355-01 1 67396042 67396042 G T MIER1 Intron 0.12 TCGA-85-8355-01 1 85592202 85592202 G A WDR63 Silent p.P707P 0.10 TCGA-85-8355-01 1 91841206 91841206 G A HFM1 Nonsense_Mutation p.Q492* 0.09 TCGA-85-8355-01 20 17596624 17596624 T A RRBP1 Missense_Mutation p.I867F 0.17 tolerated(0.06) benign(0.402) TCGA-85-8355-01 20 2411548 2411548 C T TGM6 Silent p.G614G 0.09 TCGA-85-8355-01 20 42743470 42743470 C A JPH2 Missense_Mutation p.G686V 0.29 deleterious(0) probably_damaging(0.999) TCGA-85-8355-01 20 5163738 5163738 T C CDS2 Missense_Mutation p.V207A 0.06 deleterious(0.03) benign(0.168) TCGA-85-8355-01 20 62192613 62192613 A G HELZ2 Missense_Mutation p.L2323S 0.15 deleterious(0) probably_damaging(0.979) TCGA-85-8355-01 20 62229175 62229175 G A GMEB2 Silent p.H132H 0.11 TCGA-85-8355-01 21 26978883 26978883 G C MRPL39 Missense_Mutation p.A53G 0.11 tolerated(0.26) benign(0.005) TCGA-85-8355-01 21 38461166 38461166 G T TTC3 Missense_Mutation p.D136Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-85-8355-01 21 47737203 47737203 G A C21orf58 Intron 0.23 TCGA-85-8355-01 22 38369872 38369872 G C SOX10 Missense_Mutation p.T344R 0.17 tolerated(0.23) benign(0.061) TCGA-85-8355-01 22 42981758 42981758 C T POLDIP3 3'UTR 0.06 TCGA-85-8355-01 22 44579206 44579206 G T PARVG 5'UTR 0.22 TCGA-85-8355-01 2 124979312 124979312 T A CNTNAP5 Missense_Mutation p.L38H 0.12 deleterious(0) possibly_damaging(0.798) TCGA-85-8355-01 2 170053481 170053481 G T LRP2 Missense_Mutation p.H2880N 0.26 benign(0.014) TCGA-85-8355-01 2 179470413 179470413 G T TTN Missense_Mutation p.T17870K 0.23 TCGA-85-8355-01 2 179505304 179505304 T G TTN Missense_Mutation p.T13563P 0.22 TCGA-85-8355-01 2 179585300 179585300 G - TTN Frame_Shift_Del p.P7730Hfs*4 0.22 TCGA-85-8355-01 2 179641230 179641230 G A TTN Silent p.H1787H 0.25 TCGA-85-8355-01 2 179718199 179718199 C T CCDC141 Silent p.Q1071Q 0.18 TCGA-85-8355-01 2 179732871 179732879 TCACCCAGT - CCDC141 In_Frame_Del p.E816_G818del 0.24 TCGA-85-8355-01 2 189875058 189875058 T G COL3A1 Silent p.V1326V 0.21 TCGA-85-8355-01 2 189906311 189906311 C - COL5A2 Splice_Site p.X1211_splice 0.20 TCGA-85-8355-01 2 205983668 205983668 G T PARD3B Missense_Mutation p.G235V 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-85-8355-01 2 230282900 230282900 G A DNER Silent p.S511S 0.15 TCGA-85-8355-01 2 32640174 32640174 A T BIRC6 Missense_Mutation p.Q605H 0.27 benign(0.188) TCGA-85-8355-01 2 48725635 48725635 C T PPP1R21 Nonsense_Mutation p.Q566* 0.07 TCGA-85-8355-01 2 89028831 89028831 C T RPIA Silent p.L146L 0.11 TCGA-85-8355-01 3 109023455 109023455 G T DPPA2 Missense_Mutation p.L241M 0.15 deleterious(0.01) possibly_damaging(0.697) TCGA-85-8355-01 3 113179577 113179577 T A SPICE1 Missense_Mutation p.E441V 0.11 deleterious(0) probably_damaging(0.999) TCGA-85-8355-01 3 114069772 114069772 T A ZBTB20 Missense_Mutation p.T385S 0.11 deleterious(0.02) possibly_damaging(0.899) TCGA-85-8355-01 3 121264612 121264612 A C POLQ Missense_Mutation p.V38G 0.21 deleterious(0.03) possibly_damaging(0.662) TCGA-85-8355-01 3 121413467 121413467 T A GOLGB1 Missense_Mutation p.K1968M 0.14 possibly_damaging(0.851) TCGA-85-8355-01 3 142496507 142496507 T C TRPC1 Silent p.S222S 0.09 TCGA-85-8355-01 3 160102365 160102365 T A IFT80 Missense_Mutation p.L8F 0.10 tolerated(0.14) benign(0.01) TCGA-85-8355-01 3 164783086 164783086 G C SI Missense_Mutation p.T257R 0.08 tolerated(0.13) benign(0.074) TCGA-85-8355-01 3 38991757 38991757 T A SCN11A Missense_Mutation p.I33F 0.16 deleterious(0.05) possibly_damaging(0.828) TCGA-85-8355-01 3 44975434 44975434 G A ZDHHC3 Silent p.P158P 0.17 TCGA-85-8355-01 3 45988540 45988540 T A CXCR6 Silent p.T189T 0.17 TCGA-85-8355-01 3 97887945 97887945 C A OR5H15 Silent p.A134A 0.06 TCGA-85-8355-01 4 121742358 121742358 T C PRDM5 Missense_Mutation p.N148S 0.18 tolerated(0.61) benign(0.002) TCGA-85-8355-01 4 158041742 158041742 G A GLRB Missense_Mutation p.A53T 0.16 tolerated(0.55) benign(0.033) TCGA-85-8355-01 4 166218853 166218853 G T KLHL2 Missense_Mutation p.L253F 0.10 tolerated(0.07) probably_damaging(0.957) TCGA-85-8355-01 4 24578062 24578062 C A DHX15 Missense_Mutation p.G104V 0.08 deleterious(0.03) benign(0.018) TCGA-85-8355-01 4 4411321 4411321 G T NSG1 Missense_Mutation p.A90S 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-85-8355-01 4 44450147 44450147 G T KCTD8 Missense_Mutation p.R132S 0.09 deleterious(0) possibly_damaging(0.799) TCGA-85-8355-01 4 46099313 46099313 C A GABRG1 Missense_Mutation p.W53L 0.10 deleterious(0.02) probably_damaging(0.986) TCGA-85-8355-01 4 73149000 73149000 G A ADAMTS3 Silent p.H1157H 0.11 TCGA-85-8355-01 4 89575284 89575284 G A HERC3 Silent p.K259K 0.07 TCGA-85-8355-01 5 140531319 140531320 - G PCDHB6 Frame_Shift_Ins p.H495Afs*179 0.14 TCGA-85-8355-01 5 140754914 140754914 G A PCDHGA6 Missense_Mutation p.V422M 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.795) TCGA-85-8355-01 5 149677031 149677031 G A ARSI Missense_Mutation p.R486C 0.14 deleterious(0.01) possibly_damaging(0.696) TCGA-85-8355-01 5 175798782 175798782 A G ARL10 Missense_Mutation p.I207V 0.15 tolerated(1) benign(0.005) TCGA-85-8355-01 5 176940775 176940775 T G DDX41 Missense_Mutation p.I337L 0.09 tolerated(0.75) benign(0.069) TCGA-85-8355-01 5 31318085 31318085 T A CDH6 Intron 0.05 TCGA-85-8355-01 6 106967793 106967793 G A AIM1 Missense_Mutation p.V496M 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.838) TCGA-85-8355-01 6 106987398 106987398 G A AIM1 Silent p.L1205L 0.24 TCGA-85-8355-01 6 108489324 108489324 G T NR2E1 Intron 0.21 TCGA-85-8355-01 6 117631281 117631281 A G ROS1 Silent p.L2133L 0.10 TCGA-85-8355-01 6 123319235 123319235 C G CLVS2 Missense_Mutation p.P105A 0.09 deleterious(0) probably_damaging(1) TCGA-85-8355-01 6 123332298 123332298 C A CLVS2 Silent p.G186G 0.09 TCGA-85-8355-01 6 129723594 129723594 C A LAMA2 Missense_Mutation p.H1896Q 0.05 deleterious(0.02) benign(0.234) TCGA-85-8355-01 6 139262590 139262590 T A REPS1 Silent p.T339T 0.11 TCGA-85-8355-01 6 146264810 146264810 G T SHPRH Silent p.S569S 0.09 TCGA-85-8355-01 6 151331060 151331060 T C MTHFD1L Missense_Mutation p.V744A 0.10 deleterious(0.02) possibly_damaging(0.633) TCGA-85-8355-01 6 152129095 152129095 T C ESR1 Silent p.H16H 0.12 TCGA-85-8355-01 6 160241489 160241489 C A PNLDC1 Silent p.V501V 0.10 TCGA-85-8355-01 6 161523025 161523025 G A MAP3K4 Splice_Site p.X1259_splice 0.13 TCGA-85-8355-01 6 165715724 165715724 G A C6orf118 Silent p.H29H 0.08 TCGA-85-8355-01 6 170627579 170627579 G A FAM120B Silent p.V367V 0.09 TCGA-85-8355-01 6 26056650 26056650 C T HIST1H1C Missense_Mutation p.E3K 0.06 deleterious(0) benign(0.305) TCGA-85-8355-01 6 38905829 38905829 G A DNAH8 Silent p.L3664L 0.28 TCGA-85-8355-01 6 62995886 62995886 G T KHDRBS2 5'UTR 0.23 TCGA-85-8355-01 6 70984431 70984431 C T COL9A1 Silent p.K340K 0.16 TCGA-85-8355-01 6 74073561 74073561 G T KHDC3L Missense_Mutation p.R211L 0.13 tolerated(0.12) benign(0.229) TCGA-85-8355-01 6 84061856 84061856 C A ME1 Missense_Mutation p.G122V 0.20 deleterious(0) probably_damaging(1) TCGA-85-8355-01 6 87725545 87725545 C T HTR1E Missense_Mutation p.R165C 0.16 deleterious(0.03) benign(0.016) TCGA-85-8355-01 6 97246717 97246717 C T GPR63 Silent p.Q297Q 0.15 TCGA-85-8355-01 6 97677017 97677017 C A MMS22L Missense_Mutation p.A598S 0.22 tolerated(0.63) probably_damaging(0.994) TCGA-85-8355-01 6 99739678 99739678 A G FAXC Missense_Mutation p.M281T 0.16 deleterious(0.02) benign(0.287) TCGA-85-8355-01 7 100732733 100732733 G T TRIM56 Missense_Mutation p.D714Y 0.12 deleterious(0.01) probably_damaging(0.935) TCGA-85-8355-01 7 111484871 111484871 C G DOCK4 Missense_Mutation p.S895T 0.14 tolerated(0.09) benign(0.211) TCGA-85-8355-01 7 113558818 113558818 T C PPP1R3A Silent p.K78K 0.16 TCGA-85-8355-01 7 128370112 128370112 C - FAM71F1 Frame_Shift_Del p.P338Hfs*3 0.08 TCGA-85-8355-01 7 132973757 132973757 G T EXOC4 Nonsense_Mutation p.E120* 0.09 TCGA-85-8355-01 7 136700297 136700297 G T CHRM2 Missense_Mutation p.D229Y 0.29 deleterious(0.05) benign(0.043) TCGA-85-8355-01 7 142423654 142423654 C G TRBV27 Missense_Mutation p.Q104E 0.11 TCGA-85-8355-01 7 147675022 147675022 C A CNTNAP2 Missense_Mutation p.T775N 0.16 deleterious(0) benign(0.275) TCGA-85-8355-01 7 149497420 149497420 C T SSPO RNA 0.22 TCGA-85-8355-01 7 23164376 23164376 T G KLHL7 Missense_Mutation p.L98R 0.13 deleterious(0) probably_damaging(0.989) TCGA-85-8355-01 7 26724383 26724383 C T SKAP2 Missense_Mutation p.R320H 0.07 deleterious(0.03) possibly_damaging(0.597) TCGA-85-8355-01 7 38247227 38247227 A T STARD3NL Missense_Mutation p.E41V 0.11 deleterious(0.04) benign(0.018) TCGA-85-8355-01 7 42007191 42007191 C A GLI3 Intron 0.10 TCGA-85-8355-01 7 4213888 4213888 A G SDK1 Missense_Mutation p.Q1612R 0.14 tolerated(0.51) benign(0.014) TCGA-85-8355-01 7 45109448 45109448 T A CCM2 Nonsense_Mutation p.C232* 0.07 TCGA-85-8355-01 7 64166872 64166872 G C ZNF107 Missense_Mutation p.V64L 0.10 tolerated(1) benign(0) TCGA-85-8355-01 7 71275324 71275324 C A CALN1 Nonsense_Mutation p.G219* 0.12 TCGA-85-8355-01 7 72267447 72267447 C T TYW1B Missense_Mutation p.G272S 0.09 deleterious(0.03) probably_damaging(0.995) TCGA-85-8355-01 7 72985593 72985593 C A TBL2 Missense_Mutation p.E268D 0.14 tolerated(0.09) benign(0.008) TCGA-85-8355-01 7 7571344 7571344 G T COL28A1 Missense_Mutation p.P106T 0.10 tolerated(0.27) benign(0.403) TCGA-85-8355-01 7 82595295 82595295 T A PCLO Missense_Mutation p.Q1270L 0.14 unknown(0) TCGA-85-8355-01 7 86794320 86794320 G A DMTF1 Silent p.L21L 0.10 TCGA-85-8355-01 7 92244476 92244476 G A CDK6 Missense_Mutation p.T320I 0.17 tolerated_low_confidence(0.19) benign(0.091) TCGA-85-8355-01 7 98547186 98547186 C T TRRAP Silent p.L1638L 0.14 TCGA-85-8355-01 8 104898223 104898223 G C RIMS2 Missense_Mutation p.V466L 0.15 tolerated_low_confidence(0.57) benign(0.063) TCGA-85-8355-01 8 109796609 109796609 G A TMEM74 Missense_Mutation p.T240M 0.06 deleterious(0) possibly_damaging(0.863) TCGA-85-8355-01 8 125989256 125989256 G A ZNF572 Missense_Mutation p.C249Y 0.18 deleterious(0) probably_damaging(1) TCGA-85-8355-01 8 126085521 126085521 G A KIAA0196 Nonsense_Mutation p.Q342* 0.15 TCGA-85-8355-01 8 12946174 12946174 T C DLC1 Missense_Mutation p.I1372V 0.11 tolerated(1) benign(0.035) TCGA-85-8355-01 8 139153531 139153531 G A FAM135B Missense_Mutation p.R1234W 0.15 deleterious(0) probably_damaging(0.995) TCGA-85-8355-01 8 25234887 25234887 G T DOCK5 Nonsense_Mutation p.E1295* 0.08 TCGA-85-8355-01 8 30700270 30700270 A G TEX15 Silent p.F2088F 0.11 TCGA-85-8355-01 8 4494933 4494933 G C CSMD1 Missense_Mutation p.A78G 0.03 probably_damaging(0.997) TCGA-85-8355-01 8 48650126 48650126 C T CEBPD Missense_Mutation p.G186D 0.21 tolerated(0.2) possibly_damaging(0.886) TCGA-85-8355-01 8 73921346 73921346 C A TERF1 Silent p.A75A 0.10 TCGA-85-8355-01 8 86575248 86575248 G A REXO1L1P Missense_Mutation p.P160L 0.18 tolerated(0.22) benign(0.002) TCGA-85-8355-01 8 89053912 89053912 C T MMP16 Missense_Mutation p.G534E 0.08 tolerated(0.61) benign(0.241) TCGA-85-8355-01 9 133543571 133543571 C T PRDM12 Silent p.R147R 0.05 TCGA-85-8355-01 9 139912107 139912107 C T ABCA2 Nonsense_Mutation p.W750* 0.19 TCGA-85-8355-01 9 21971107 21971107 T C CDKN2A Missense_Mutation p.D84G 0.22 deleterious(0) probably_damaging(1) TCGA-85-8355-01 9 8499749 8499749 C T PTPRD Silent p.Q740Q 0.13 TCGA-85-8355-01 9 87482184 87482184 G T NTRK2 Missense_Mutation p.D491Y 0.20 deleterious(0) probably_damaging(1) TCGA-85-8355-01 9 99694490 99694490 C A NUTM2G Missense_Mutation p.P168H 0.14 deleterious(0) probably_damaging(0.959) TCGA-85-8355-01 X 10077960 10077960 C T WWC3 Missense_Mutation p.R292C 0.17 deleterious(0.03) probably_damaging(0.919) TCGA-85-8355-01 X 109964712 109964712 G T CHRDL1 Nonsense_Mutation p.C116* 0.24 TCGA-85-8355-01 X 110385391 110385391 T C PAK3 Silent p.H81H 0.27 TCGA-85-8355-01 X 110644507 110644507 G A DCX Missense_Mutation p.T220I 0.22 deleterious(0.01) possibly_damaging(0.707) TCGA-85-8355-01 X 112024173 112024173 A C AMOT Missense_Mutation p.L805R 0.25 unknown(0) TCGA-85-8355-01 X 115304143 115304143 T C AGTR2 Missense_Mutation p.Y204H 0.18 deleterious(0) probably_damaging(1) TCGA-85-8355-01 X 118148222 118148222 A T LONRF3 Missense_Mutation p.Q676L 0.08 deleterious(0) benign(0.063) TCGA-85-8355-01 X 12734711 12734711 G T FRMPD4 Silent p.V711V 0.16 TCGA-85-8355-01 X 144337404 144337404 C A SPANXN1 3'UTR 0.23 TCGA-85-8355-01 X 151283874 151283874 G C RP11-1007I13.4 RNA 0.35 TCGA-85-8355-01 X 26158065 26158065 G T MAGEB18 Missense_Mutation p.R321S 0.30 tolerated(0.08) benign(0.185) TCGA-85-8355-01 X 47464711 47464711 G A SYN1 Missense_Mutation p.R199C 0.19 deleterious(0) probably_damaging(0.938) TCGA-85-8355-01 X 73041312 73041312 A T XIST RNA 0.27 TCGA-85-8479-01 10 104445750 104445750 C T ARL3 Silent p.A108A 0.32 TCGA-85-8479-01 10 120354697 120354697 C A PRLHR Silent p.P20P 0.12 TCGA-85-8479-01 10 37451772 37451772 A G ANKRD30A Silent p.R610R 0.31 TCGA-85-8479-01 10 99023276 99023276 G A ARHGAP19 Missense_Mutation p.H172Y 0.36 deleterious(0.01) probably_damaging(0.968) TCGA-85-8479-01 11 22284582 22284582 A G ANO5 Missense_Mutation p.I631V 0.37 tolerated(0.71) benign(0.04) TCGA-85-8479-01 11 47611530 47611530 A G C1QTNF4 Missense_Mutation p.L278P 0.44 deleterious(0) probably_damaging(1) TCGA-85-8479-01 11 57799000 57799000 G C OR6Q1 Silent p.S192S 0.37 TCGA-85-8479-01 11 59480632 59480632 G T OR10V1 Silent p.I229I 0.09 TCGA-85-8479-01 11 63398860 63398860 A G ATL3 Silent p.H397H 0.54 TCGA-85-8479-01 11 72083988 72083988 C A CLPB Missense_Mutation p.W239C 0.47 tolerated_low_confidence(0.12) benign(0) TCGA-85-8479-01 11 9598042 9598042 A T WEE1 Silent p.T285T 0.46 TCGA-85-8479-01 11 9985363 9985363 C T SBF2 Missense_Mutation p.C556Y 0.21 deleterious(0) probably_damaging(1) TCGA-85-8479-01 12 113906042 113906042 C T LHX5 Missense_Mutation p.A189T 0.51 deleterious(0.02) probably_damaging(0.946) TCGA-85-8479-01 12 13764711 13764711 G C GRIN2B Silent p.V576V 0.38 TCGA-85-8479-01 12 21175864 21175864 A C SLCO1B7 Missense_Mutation p.I141L 0.38 deleterious(0.03) benign(0.351) TCGA-85-8479-01 12 52307521 52307521 G A ACVRL1 Silent p.L164L 0.35 TCGA-85-8479-01 12 7047973 7047986 CTTTGAGGTGAAGC - ATN1 Frame_Shift_Del p.F950* 0.35 TCGA-85-8479-01 12 7635263 7635263 G A CD163 Nonsense_Mutation p.R1075* 0.36 TCGA-85-8479-01 13 108518267 108518267 A G FAM155A Silent p.C226C 0.24 TCGA-85-8479-01 13 114514859 114514859 C T TMEM255B Missense_Mutation p.P322S 0.22 deleterious(0) probably_damaging(1) TCGA-85-8479-01 13 21212607 21212607 A T IFT88 Missense_Mutation p.K517I 0.54 deleterious(0.05) possibly_damaging(0.908) TCGA-85-8479-01 13 26974619 26974619 A G CDK8 Missense_Mutation p.I321M 0.42 deleterious(0.05) benign(0.081) TCGA-85-8479-01 13 79190038 79190038 G A RNF219 Nonsense_Mutation p.Q620* 0.04 TCGA-85-8479-01 14 104490997 104490997 C T TDRD9 Silent p.L900L 0.30 TCGA-85-8479-01 14 19378560 19378560 T C OR11H12 Missense_Mutation p.S323P 0.63 tolerated(0.27) benign(0.002) TCGA-85-8479-01 14 21511248 21511248 A T RNASE7 Missense_Mutation p.M33L 0.34 tolerated(0.88) benign(0) TCGA-85-8479-01 15 29346586 29346586 A G APBA2 Missense_Mutation p.I167V 0.19 tolerated_low_confidence(0.6) benign(0.001) TCGA-85-8479-01 15 48707814 48707814 G T FBN1 Missense_Mutation p.A2657D 0.20 possibly_damaging(0.543) TCGA-85-8479-01 15 54586231 54586231 G T UNC13C Missense_Mutation p.L1319F 0.07 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-85-8479-01 15 58938287 58938287 T C ADAM10 Silent p.K234K 0.38 TCGA-85-8479-01 15 64422475 64422475 C T SNX1 Missense_Mutation p.R324W 0.17 deleterious(0) probably_damaging(0.992) TCGA-85-8479-01 15 90349460 90349460 C T ANPEP Missense_Mutation p.V119I 0.45 deleterious(0.04) benign(0.009) TCGA-85-8479-01 15 93007372 93007372 C A ST8SIA2 Silent p.T295T 0.19 TCGA-85-8479-01 16 12758641 12758641 T A CPPED1 3'UTR 0.42 TCGA-85-8479-01 16 16248858 16248858 T A ABCC6 Nonsense_Mutation p.K1305* 0.38 TCGA-85-8479-01 16 29912568 29912568 C T ASPHD1 Silent p.L92L 0.25 TCGA-85-8479-01 16 57918289 57918289 C A CNGB1 Missense_Mutation p.A1179S 0.22 tolerated(0.42) benign(0.055) TCGA-85-8479-01 16 67919802 67919802 G T NRN1L Intron 0.32 TCGA-85-8479-01 16 70843786 70843786 G A HYDIN Missense_Mutation p.P4928L 0.30 probably_damaging(0.96) TCGA-85-8479-01 17 10538206 10538206 G T MYH3 Missense_Mutation p.A1436D 0.32 deleterious(0.02) benign(0.369) TCGA-85-8479-01 17 21216810 21216810 G A MAP2K3 Silent p.R307R 0.24 TCGA-85-8479-01 17 21319309 21319309 C T KCNJ12 Missense_Mutation p.R219C 0.29 deleterious(0) probably_damaging(0.995) TCGA-85-8479-01 17 32964221 32964221 C G TMEM132E Missense_Mutation p.S642C 0.52 tolerated(0.07) probably_damaging(0.936) TCGA-85-8479-01 17 43893842 43893842 C A CRHR1 Missense_Mutation p.N45K 0.43 tolerated(0.19) benign(0.234) TCGA-85-8479-01 17 7579312 7579312 C A TP53 Silent p.T125T 0.50 TCGA-85-8479-01 17 9694499 9694499 C A DHRS7C Missense_Mutation p.V35L 0.47 tolerated(0.63) benign(0.077) TCGA-85-8479-01 18 9535819 9535819 G A RALBP1 Missense_Mutation p.V618I 0.36 tolerated_low_confidence(0.24) benign(0) TCGA-85-8479-01 19 11038345 11038345 G A YIPF2 Silent p.F80F 0.26 TCGA-85-8479-01 19 12867109 12867109 C T BEST2 Missense_Mutation p.T368M 0.19 deleterious(0.03) benign(0.302) TCGA-85-8479-01 19 15726563 15726563 C T AD000091.2 5'Flank 0.23 TCGA-85-8479-01 19 20728586 20728586 T A ZNF737 Missense_Mutation p.Q141H 0.29 tolerated(0.11) benign(0.139) TCGA-85-8479-01 19 23543377 23543377 C T ZNF91 Missense_Mutation p.E802K 0.50 deleterious(0.04) probably_damaging(0.985) TCGA-85-8479-01 19 40325322 40325322 G A FBL Silent p.V309V 0.30 TCGA-85-8479-01 19 41115691 41115691 C T LTBP4 Missense_Mutation p.P600L 0.32 deleterious(0.02) possibly_damaging(0.738) TCGA-85-8479-01 19 48836623 48836623 G A TMEM143 Silent p.T411T 0.07 TCGA-85-8479-01 19 49216594 49216594 C T MAMSTR Missense_Mutation p.S393N 0.24 deleterious(0) unknown(0) TCGA-85-8479-01 19 9083804 9083804 C T MUC16 Missense_Mutation p.V2671M 0.46 unknown(0) TCGA-85-8479-01 19 9089654 9089654 T A MUC16 Missense_Mutation p.S721C 0.15 unknown(0) TCGA-85-8479-01 1 102270213 102270213 T C OLFM3 Missense_Mutation p.T320A 0.26 tolerated(0.23) probably_damaging(0.992) TCGA-85-8479-01 1 145561358 145561358 C T ANKRD35 Missense_Mutation p.S349F 0.26 tolerated(0.37) benign(0) TCGA-85-8479-01 1 147381022 147381022 C T GJA8 Missense_Mutation p.R314W 0.29 deleterious(0.01) probably_damaging(0.912) TCGA-85-8479-01 1 148004793 148004793 T G NBPF14 Splice_Site p.X847_splice 0.31 TCGA-85-8479-01 1 154988936 154988936 C T ZBTB7B Silent p.D499D 0.46 TCGA-85-8479-01 1 155110531 155110531 C T SLC50A1 Missense_Mutation p.S174F 0.22 deleterious(0.01) probably_damaging(0.953) TCGA-85-8479-01 1 155149546 155149546 C A TRIM46 Missense_Mutation p.L270I 0.48 tolerated(0.09) possibly_damaging(0.64) TCGA-85-8479-01 1 160793460 160793460 G A LY9 Silent p.Q568Q 0.50 TCGA-85-8479-01 1 216258203 216258203 A T USH2A Silent p.G1668G 0.22 TCGA-85-8479-01 1 228194821 228194821 C A WNT3A 5'UTR 0.48 TCGA-85-8479-01 1 241725611 241725611 T C KMO Silent p.T198T 0.25 TCGA-85-8479-01 1 247902463 247902463 C G OR14K1 Missense_Mutation p.L183V 0.37 deleterious(0.01) probably_damaging(0.985) TCGA-85-8479-01 1 32202284 32202286 AAG - BAI2 In_Frame_Del p.F1007del 0.26 TCGA-85-8479-01 1 35223279 35223279 C G GJB5 Silent p.L116L 0.28 TCGA-85-8479-01 1 41990520 41990520 C T HIVEP3 Missense_Mutation p.E1757K 0.21 probably_damaging(0.993) TCGA-85-8479-01 1 75055494 75055494 T G C1orf173 Missense_Mutation p.E666A 0.35 tolerated(0.09) possibly_damaging(0.455) TCGA-85-8479-01 1 79107575 79107575 C T IFI44L 3'UTR 0.28 TCGA-85-8479-01 20 2308768 2308768 G T TGM3 Missense_Mutation p.V364L 0.30 tolerated(0.49) benign(0.446) TCGA-85-8479-01 20 9364962 9364962 T C PLCB4 Missense_Mutation p.F323S 0.34 deleterious(0) probably_damaging(0.911) TCGA-85-8479-01 21 41711158 41711158 C T DSCAM Silent p.V465V 0.63 TCGA-85-8479-01 21 43176719 43176719 G A RIPK4 Missense_Mutation p.A147V 0.59 deleterious(0.01) possibly_damaging(0.574) TCGA-85-8479-01 22 24086120 24086120 C A ZNF70 Missense_Mutation p.R403L 0.35 tolerated(0.09) benign(0.153) TCGA-85-8479-01 22 39884549 39884549 C T MGAT3 Silent p.T399T 0.26 TCGA-85-8479-01 22 50633380 50633380 C T TRABD Missense_Mutation p.R111C 0.23 deleterious(0) probably_damaging(1) TCGA-85-8479-01 2 105473316 105473316 G T POU3F3 Missense_Mutation p.V450L 0.25 deleterious(0) probably_damaging(0.948) TCGA-85-8479-01 2 109379708 109379708 A G RANBP2 Missense_Mutation p.M905V 0.35 tolerated(0.09) benign(0) TCGA-85-8479-01 2 112630835 112630835 C A ANAPC1 Intron 0.27 TCGA-85-8479-01 2 113060842 113060842 A T ZC3H6 Missense_Mutation p.S84C 0.23 deleterious(0.02) unknown(0) TCGA-85-8479-01 2 114699776 114699776 A T ACTR3 Missense_Mutation p.Y233F 0.41 deleterious(0.04) benign(0.214) TCGA-85-8479-01 2 141032121 141032121 C G LRP1B Silent p.G4338G 0.35 TCGA-85-8479-01 2 152380868 152380868 G C NEB Missense_Mutation p.P7479R 0.24 probably_damaging(1) TCGA-85-8479-01 2 15470788 15470788 C A NBAS Silent p.A1427A 0.28 TCGA-85-8479-01 2 179585182 179585182 G A TTN Silent p.V7769V 0.36 TCGA-85-8479-01 2 46588071 46588071 T A EPAS1 Silent p.P207P 0.29 TCGA-85-8479-01 3 113890596 113890596 C A DRD3 Missense_Mutation p.V82L 0.36 deleterious(0.03) benign(0.14) TCGA-85-8479-01 3 1443143 1443143 G T CNTN6 Missense_Mutation p.A911S 0.62 tolerated(0.67) probably_damaging(0.998) TCGA-85-8479-01 3 185236993 185236993 C T LIPH Missense_Mutation p.D275N 0.23 tolerated(0.07) benign(0.33) TCGA-85-8479-01 3 46063005 46063005 G A XCR1 Silent p.C145C 0.12 TCGA-85-8479-01 3 52621518 52621519 - T PBRM1 Intron 0.32 TCGA-85-8479-01 3 9055149 9055149 T C SRGAP3 Missense_Mutation p.M664V 0.64 tolerated(0.2) benign(0.16) TCGA-85-8479-01 3 97983701 97983701 A G OR5H6 Silent p.Q191Q 0.05 TCGA-85-8479-01 4 187630588 187630588 G A FAT1 Nonsense_Mutation p.R132* 0.51 TCGA-85-8479-01 4 44177055 44177055 G A KCTD8 Missense_Mutation p.P392S 0.33 tolerated(0.25) probably_damaging(0.992) TCGA-85-8479-01 4 47880545 47880545 G A NFXL1 Silent p.N692N 0.31 TCGA-85-8479-01 4 5564621 5564623 TTC - EVC2 In_Frame_Del p.K1293del 0.13 TCGA-85-8479-01 4 62813905 62813905 C G LPHN3 Missense_Mutation p.R838G 0.58 deleterious(0) probably_damaging(0.998) TCGA-85-8479-01 4 8417559 8417559 G A ACOX3 Silent p.P104P 0.29 TCGA-85-8479-01 5 112349263 112349263 C T DCP2 3'UTR 0.50 TCGA-85-8479-01 5 140176233 140176233 G A PCDHA2 Missense_Mutation p.A562T 0.30 deleterious_low_confidence(0.01) benign(0.152) TCGA-85-8479-01 5 155771576 155771576 T C SGCD Silent p.I27I 0.31 TCGA-85-8479-01 5 161580517 161580517 T A GABRG2 3'UTR 0.26 TCGA-85-8479-01 5 176018305 176018305 A G CDHR2 Missense_Mutation p.N1212D 0.26 deleterious(0) possibly_damaging(0.877) TCGA-85-8479-01 5 23526947 23526947 G T PRDM9 Nonsense_Mutation p.E584* 0.19 TCGA-85-8479-01 5 35800112 35800112 C A SPEF2 Missense_Mutation p.Q1625K 0.42 tolerated(1) benign(0.032) TCGA-85-8479-01 5 82835143 82835143 A G VCAN Silent p.R2107R 0.21 TCGA-85-8479-01 6 128540142 128540142 G A PTPRK Nonsense_Mutation p.Q265* 0.46 TCGA-85-8479-01 6 17608469 17608469 T C FAM8A1 Missense_Mutation p.F381L 0.08 tolerated(0.27) benign(0.23) TCGA-85-8479-01 6 31935611 31935611 C T SKIV2L Silent p.L901L 0.27 TCGA-85-8479-01 6 33652580 33652580 G A ITPR3 Missense_Mutation p.A1723T 0.29 tolerated(0.28) benign(0.15) TCGA-85-8479-01 6 35765011 35765011 G A CLPS Missense_Mutation p.P19S 0.23 deleterious(0.03) probably_damaging(1) TCGA-85-8479-01 6 88853707 88853707 C T CNR1 Silent p.S429S 0.44 TCGA-85-8479-01 7 138391293 138391293 C T ATP6V0A4 3'UTR 0.11 TCGA-85-8479-01 7 141537039 141537039 G A PRSS37 Missense_Mutation p.P147L 0.28 tolerated(0.06) probably_damaging(0.999) TCGA-85-8479-01 7 148702365 148702365 C A PDIA4 Missense_Mutation p.D464Y 0.29 deleterious(0) possibly_damaging(0.811) TCGA-85-8479-01 7 148702366 148702366 C A PDIA4 Missense_Mutation p.K463N 0.29 deleterious(0.02) benign(0.439) TCGA-85-8479-01 7 20444419 20444419 G A ITGB8 Missense_Mutation p.S619N 0.37 tolerated(0.25) possibly_damaging(0.501) TCGA-85-8479-01 7 26240345 26240345 G A HNRNPA2B1 5'UTR 0.15 TCGA-85-8479-01 7 6187494 6187494 G A USP42 Missense_Mutation p.G453R 0.05 deleterious(0.01) probably_damaging(1) TCGA-85-8479-01 7 65546871 65546871 C T ASL Missense_Mutation p.R32W 0.25 tolerated(0.06) benign(0.008) TCGA-85-8479-01 7 87537048 87537048 G A DBF4 Missense_Mutation p.G532D 0.28 tolerated(1) benign(0.001) TCGA-85-8479-01 8 120886206 120886206 A G DEPTOR Silent p.L40L 0.15 TCGA-85-8479-01 8 144997339 144997339 G A PLEC Missense_Mutation p.A2390V 0.29 benign(0.074) TCGA-85-8479-01 8 144997340 144997340 C A PLEC Missense_Mutation p.A2390S 0.28 possibly_damaging(0.509) TCGA-85-8479-01 8 145626867 145626867 C A CPSF1 Missense_Mutation p.G88V 0.37 deleterious(0) probably_damaging(0.957) TCGA-85-8479-01 8 37553717 37553717 T A ZNF703 Missense_Mutation p.S74T 0.47 deleterious(0) possibly_damaging(0.483) TCGA-85-8479-01 8 38271083 38271083 G A FGFR1 3'UTR 0.25 TCGA-85-8479-01 8 48713425 48713425 C A PRKDC Missense_Mutation p.A3348S 0.28 benign(0.013) TCGA-85-8479-01 8 62371051 62371051 G A CLVS1 Silent p.K309K 0.27 TCGA-85-8479-01 8 71646269 71646269 A T XKR9 Silent p.I244I 0.30 TCGA-85-8479-01 8 88885197 88885197 C G DCAF4L2 Missense_Mutation p.D335H 0.35 deleterious(0) probably_damaging(0.997) TCGA-85-8479-01 9 104356946 104356946 G C PPP3R2 Silent p.G89G 0.56 TCGA-85-8479-01 9 114994384 114994384 G A PTBP3 Missense_Mutation p.P373S 0.71 tolerated(0.08) benign(0.016) TCGA-85-8479-01 9 129154431 129154431 A T MVB12B Missense_Mutation p.M166L 0.65 tolerated(1) benign(0.001) TCGA-85-8479-01 9 133799212 133799212 G A FIBCD1 Silent p.G256G 0.60 TCGA-85-8479-01 9 134503377 134503377 C A RAPGEF1 Missense_Mutation p.S376I 0.53 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-85-8479-01 9 138703111 138703111 A G CAMSAP1 3'UTR 0.62 TCGA-85-8479-01 9 70918913 70918913 G T FOXD4L3 Missense_Mutation p.R349L 0.39 deleterious_low_confidence(0) benign(0.042) TCGA-85-8479-01 9 72929701 72929701 C T SMC5 Missense_Mutation p.P541L 0.37 deleterious(0) probably_damaging(1) TCGA-85-8479-01 9 79118475 79118475 G A GCNT1 Missense_Mutation p.R393H 0.59 tolerated(0.08) benign(0.001) TCGA-85-8479-01 9 79968340 79968340 A G VPS13A Missense_Mutation p.I2479V 0.77 tolerated(0.61) benign(0.003) TCGA-85-8479-01 X 107683293 107683293 A G COL4A5 5'UTR 0.75 TCGA-85-8479-01 X 135741275 135741275 G A CD40LG Missense_Mutation p.V163I 0.25 tolerated(0.31) benign(0.083) TCGA-85-8479-01 X 18842096 18842096 C A PPEF1 Missense_Mutation p.N519K 0.75 tolerated(0.13) benign(0.004) TCGA-85-8479-01 X 48924800 48924800 T - CCDC120 Frame_Shift_Del p.S349Pfs*4 0.47 TCGA-85-8479-01 X 53561618 53561618 G A HUWE1 Silent p.F4230F 0.75 TCGA-85-8481-01 10 100182177 100182177 C T HPS1 Silent p.K564K 0.12 TCGA-85-8481-01 10 115981222 115981222 A G TDRD1 Silent p.P959P 0.12 TCGA-85-8481-01 10 120818869 120818869 G C EIF3A Missense_Mutation p.S495C 0.06 deleterious(0) unknown(0) TCGA-85-8481-01 10 121652313 121652313 A T SEC23IP Missense_Mutation p.N7Y 0.19 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-85-8481-01 10 129537126 129537126 A T FOXI2 Missense_Mutation p.Q285L 0.10 tolerated(0.22) benign(0.403) TCGA-85-8481-01 10 18807345 18807345 G T CACNB2 Missense_Mutation p.E295D 0.07 deleterious(0.03) probably_damaging(0.99) TCGA-85-8481-01 10 26562598 26562598 A T GAD2 Nonsense_Mutation p.K376* 0.10 TCGA-85-8481-01 10 37508387 37508387 C A ANKRD30A Silent p.L1193L 0.13 TCGA-85-8481-01 10 44112774 44112774 A G ZNF485 Missense_Mutation p.H428R 0.17 deleterious(0.01) probably_damaging(0.983) TCGA-85-8481-01 10 44139541 44139541 A G ZNF32 Missense_Mutation p.L260P 0.15 deleterious(0) probably_damaging(1) TCGA-85-8481-01 10 55587218 55587218 C T PCDH15 Silent p.A1434A 0.18 TCGA-85-8481-01 10 55913041 55913041 C A PCDH15 Missense_Mutation p.D535Y 0.09 deleterious(0) probably_damaging(1) TCGA-85-8481-01 10 58119558 58119558 C G ZWINT Missense_Mutation p.E105Q 0.04 tolerated(0.31) benign(0.013) TCGA-85-8481-01 10 69966568 69966568 A C MYPN Missense_Mutation p.Q1234P 0.22 deleterious(0) probably_damaging(0.992) TCGA-85-8481-01 10 76935840 76935840 G T SAMD8 Missense_Mutation p.W270L 0.14 tolerated(0.39) benign(0.005) TCGA-85-8481-01 10 87362209 87362209 G C GRID1 Missense_Mutation p.L951V 0.07 deleterious_low_confidence(0.04) possibly_damaging(0.703) TCGA-85-8481-01 10 87379764 87379764 C A GRID1 Silent p.L740L 0.10 TCGA-85-8481-01 10 93314 93314 A T TUBB8 Missense_Mutation p.Y340N 0.19 deleterious_low_confidence(0.03) probably_damaging(0.995) TCGA-85-8481-01 11 104872924 104872924 T G CASP5 Missense_Mutation p.Y196S 0.15 deleterious(0) probably_damaging(0.999) TCGA-85-8481-01 11 108155161 108155161 C G ATM Silent p.V1318V 0.14 TCGA-85-8481-01 11 108204635 108204635 C G ATM Missense_Mutation p.D2650E 0.04 tolerated(0.14) benign(0.041) TCGA-85-8481-01 11 110451752 110451752 C A ARHGAP20 Missense_Mutation p.D640Y 0.19 deleterious(0.02) probably_damaging(0.969) TCGA-85-8481-01 11 118485391 118485391 G C PHLDB1 Missense_Mutation p.E60Q 0.14 tolerated(0.23) possibly_damaging(0.824) TCGA-85-8481-01 11 120998540 120998540 G A TECTA Silent p.T618T 0.11 TCGA-85-8481-01 11 125550671 125550671 T A ACRV1 Missense_Mutation p.N2I 0.20 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-85-8481-01 11 14825552 14825552 C G PDE3B Nonsense_Mutation p.S493* 0.71 TCGA-85-8481-01 11 17544449 17544449 G T USH1C Silent p.R301R 0.15 TCGA-85-8481-01 11 18568468 18568468 T G UEVLD Missense_Mutation p.H282P 0.16 deleterious(0.02) probably_damaging(1) TCGA-85-8481-01 11 19970289 19970289 A T NAV2 Missense_Mutation p.S793C 0.14 deleterious(0) probably_damaging(0.998) TCGA-85-8481-01 11 19970290 19970290 G T NAV2 Missense_Mutation p.S793I 0.13 deleterious(0) probably_damaging(0.997) TCGA-85-8481-01 11 20112453 20112453 G A NAV2 Silent p.Q1906Q 0.12 TCGA-85-8481-01 11 36251021 36251021 G A LDLRAD3 3'UTR 0.22 TCGA-85-8481-01 11 4703127 4703127 C A OR51E2 Missense_Mutation p.R272L 0.24 deleterious(0.05) benign(0.134) TCGA-85-8481-01 11 49178353 49178353 G A FOLH1 Silent p.S513S 0.16 TCGA-85-8481-01 11 49974689 49974689 G A OR4C13 Missense_Mutation p.V239I 0.14 tolerated_low_confidence(0.84) benign(0.026) TCGA-85-8481-01 11 55065636 55065636 G T TRIM51HP RNA 0.12 TCGA-85-8481-01 11 55110769 55110769 C A OR4A16 Silent p.L31L 0.08 TCGA-85-8481-01 11 55681773 55681773 C A OR5W2 Missense_Mutation p.G96C 0.12 deleterious(0.01) probably_damaging(0.986) TCGA-85-8481-01 11 5686198 5686198 G A TRIM5 Silent p.F441F 0.09 TCGA-85-8481-01 11 57311176 57311176 C A SMTNL1 Missense_Mutation p.S289Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-85-8481-01 11 58477347 58477347 G T GLYAT Silent p.V261V 0.16 TCGA-85-8481-01 11 65268988 65268988 G A MALAT1 RNA 0.19 TCGA-85-8481-01 11 67266300 67266300 C T PITPNM1 Silent p.G417G 0.12 TCGA-85-8481-01 11 71725070 71725070 C T NUMA1 Missense_Mutation p.R1160Q 0.15 benign(0.001) TCGA-85-8481-01 11 71850416 71850416 G T FOLR3 Missense_Mutation p.R170L 0.12 deleterious(0) possibly_damaging(0.692) TCGA-85-8481-01 11 72145339 72145339 C A CLPB Silent p.P60P 0.21 TCGA-85-8481-01 11 77614633 77614633 G C INTS4 Missense_Mutation p.P684A 0.15 tolerated(0.25) benign(0.113) TCGA-85-8481-01 11 83810090 83810090 C A DLG2 Missense_Mutation p.G209W 0.11 deleterious(0) probably_damaging(0.999) TCGA-85-8481-01 11 83810091 83810091 C A DLG2 Splice_Site p.X209_splice 0.11 TCGA-85-8481-01 11 88059607 88059607 A - CTSC Intron 0.11 TCGA-85-8481-01 11 89392821 89392821 G T FOLH1B RNA 0.20 TCGA-85-8481-01 11 89431600 89431600 A G FOLH1B RNA 0.16 TCGA-85-8481-01 12 100729596 100729596 A T SCYL2 Missense_Mutation p.D646V 0.29 tolerated(0.07) benign(0.258) TCGA-85-8481-01 12 129559498 129559498 T C TMEM132D Missense_Mutation p.K741R 0.27 tolerated(0.49) benign(0.012) TCGA-85-8481-01 12 130927012 130927012 G A RIMBP2 Silent p.T278T 0.06 TCGA-85-8481-01 12 133210784 133210784 T C POLE Missense_Mutation p.M1998V 0.14 tolerated(0.28) benign(0.04) TCGA-85-8481-01 12 15475686 15475686 A G PTPRO Missense_Mutation p.H9R 0.14 tolerated_low_confidence(0.79) benign(0) TCGA-85-8481-01 12 4735697 4735697 A G AKAP3 Missense_Mutation p.Y791H 0.21 deleterious(0.02) probably_damaging(1) TCGA-85-8481-01 12 57113480 57113480 G C NACA Intron 0.26 TCGA-85-8481-01 12 57619333 57619333 C T NXPH4 Missense_Mutation p.R244C 0.20 deleterious(0) probably_damaging(0.981) TCGA-85-8481-01 12 663016 663016 C G B4GALNT3 Missense_Mutation p.L643V 0.09 tolerated(0.62) benign(0.053) TCGA-85-8481-01 12 72893323 72893323 C T TRHDE Silent p.L499L 0.28 TCGA-85-8481-01 12 91539866 91539866 C A DCN Missense_Mutation p.R350L 0.28 deleterious(0) benign(0.033) TCGA-85-8481-01 13 20277292 20277292 G T PSPC1 3'UTR 0.13 TCGA-85-8481-01 13 28866723 28866723 G A PAN3 3'Flank 0.23 TCGA-85-8481-01 13 32818192 32818192 G C FRY Missense_Mutation p.G2234A 0.20 deleterious(0) probably_damaging(0.999) TCGA-85-8481-01 13 36401852 36401852 C A DCLK1 Missense_Mutation p.V443L 0.28 tolerated(0.15) benign(0.198) TCGA-85-8481-01 13 36776210 36776210 T G SOHLH2 Missense_Mutation p.L100F 0.11 deleterious(0.02) benign(0.159) TCGA-85-8481-01 13 92560216 92560216 G C GPC5 Missense_Mutation p.G436R 0.10 deleterious(0) probably_damaging(1) TCGA-85-8481-01 14 100118817 100118817 T C HHIPL1 Missense_Mutation p.L171P 0.13 deleterious(0.02) probably_damaging(1) TCGA-85-8481-01 14 105618289 105618289 C A JAG2 Missense_Mutation p.R342M 0.10 tolerated(0.06) possibly_damaging(0.544) TCGA-85-8481-01 14 20344723 20344723 C A OR4K2 Silent p.T99T 0.15 TCGA-85-8481-01 14 20344841 20344841 C G OR4K2 Missense_Mutation p.Q139E 0.09 deleterious(0.02) benign(0.065) TCGA-85-8481-01 14 22133946 22133946 C G OR4E2 Missense_Mutation p.S217C 0.12 deleterious(0) probably_damaging(1) TCGA-85-8481-01 14 24546585 24546585 C T CPNE6 Nonsense_Mutation p.R508* 0.19 TCGA-85-8481-01 14 24614287 24614287 G C PSME2 Missense_Mutation p.L114V 0.17 tolerated(0.21) possibly_damaging(0.79) TCGA-85-8481-01 14 24877524 24877525 - T NYNRIN Frame_Shift_Ins p.D217* 0.14 TCGA-85-8481-01 14 28733876 28733876 T A BNIP3P1 RNA 0.16 TCGA-85-8481-01 14 63416886 63416886 T C KCNH5 Missense_Mutation p.E445G 0.17 deleterious(0) probably_damaging(0.999) TCGA-85-8481-01 14 90651010 90651010 G T KCNK13 Missense_Mutation p.G297V 0.18 tolerated(0.5) benign(0.028) TCGA-85-8481-01 14 95905448 95905448 T C SYNE3 Silent p.K766K 0.14 TCGA-85-8481-01 14 97009130 97009130 A G PAPOLA Missense_Mutation p.K397E 0.14 deleterious(0) probably_damaging(0.996) TCGA-85-8481-01 15 101862722 101862722 T C PCSK6 Intron 0.17 TCGA-85-8481-01 15 20643900 20643900 A C HERC2P3 RNA 0.04 TCGA-85-8481-01 15 25333952 25333952 G A SNORD116-20 RNA 0.04 TCGA-85-8481-01 15 25444411 25444411 G T SNORD115-14 3'Flank 0.32 TCGA-85-8481-01 15 34526119 34526119 C A SLC12A6 Missense_Mutation p.R1139L 0.36 deleterious(0) probably_damaging(0.993) TCGA-85-8481-01 15 35274467 35274467 C T ZNF770 Missense_Mutation p.G390D 0.08 tolerated(0.11) benign(0.025) TCGA-85-8481-01 15 42192836 42192836 C T EHD4 3'UTR 0.18 TCGA-85-8481-01 15 54306190 54306190 G T UNC13C Nonsense_Mutation p.G364* 0.17 TCGA-85-8481-01 15 57524935 57524935 C T TCF12 Missense_Mutation p.P284L 0.18 deleterious(0.05) probably_damaging(1) TCGA-85-8481-01 15 74628172 74628172 T C CCDC33 Intron 0.25 TCGA-85-8481-01 16 27523068 27523068 A C GTF3C1 Splice_Site p.X376_splice 0.25 TCGA-85-8481-01 16 4934270 4934270 G C PPL Silent p.L1462L 0.04 TCGA-85-8481-01 16 70432411 70432411 C A ST3GAL2 Missense_Mutation p.W8L 0.32 benign(0.121) TCGA-85-8481-01 16 70432412 70432412 A G ST3GAL2 Missense_Mutation p.W8R 0.32 possibly_damaging(0.654) TCGA-85-8481-01 16 71417280 71417280 C A CALB2 Nonsense_Mutation p.S137* 0.28 TCGA-85-8481-01 16 84183915 84183915 C A DNAAF1 Missense_Mutation p.A107E 0.11 tolerated(0.08) benign(0.108) TCGA-85-8481-01 16 855639 855639 C G PRR25 Missense_Mutation p.A66G 0.21 deleterious_low_confidence(0.04) benign(0.435) TCGA-85-8481-01 16 90001544 90001544 G T TUBB3 Missense_Mutation p.V229L 0.26 deleterious_low_confidence(0) benign(0.044) TCGA-85-8481-01 17 1944907 1944907 C A DPH1 Silent p.R412R 0.08 TCGA-85-8481-01 17 26723131 26723131 C G SARM1 Intron 0.23 TCGA-85-8481-01 17 28886636 28886636 T C TBC1D29 5'UTR 0.20 TCGA-85-8481-01 17 32961898 32961898 A G TMEM132E Missense_Mutation p.Y500C 0.10 deleterious(0) probably_damaging(0.997) TCGA-85-8481-01 17 33592553 33592553 G T SLFN5 Silent p.A774A 0.09 TCGA-85-8481-01 17 34182158 34182158 G A C17orf66 Missense_Mutation p.S541L 0.10 tolerated(0.28) benign(0.032) TCGA-85-8481-01 17 34624123 34624123 C A CCL3L1 3'UTR 0.40 TCGA-85-8481-01 17 37296057 37296057 C T PLXDC1 Nonsense_Mutation p.W35* 0.07 TCGA-85-8481-01 17 37666013 37666013 A T CDK12 Missense_Mutation p.S889C 0.18 probably_damaging(0.998) TCGA-85-8481-01 17 38253374 38253374 A G NR1D1 Missense_Mutation p.V105A 0.06 tolerated(0.19) benign(0.304) TCGA-85-8481-01 17 39914679 39914679 C T JUP Missense_Mutation p.R582Q 0.15 tolerated(0.76) benign(0.001) TCGA-85-8481-01 17 42987509 42987509 C T GFAP 3'Flank 0.14 TCGA-85-8481-01 17 55183204 55183204 G A AKAP1 Missense_Mutation p.D127N 0.20 tolerated(0.1) benign(0.022) TCGA-85-8481-01 17 56247224 56247224 G A OR4D2 Missense_Mutation p.D70N 0.18 deleterious(0.01) possibly_damaging(0.896) TCGA-85-8481-01 17 56342160 56342160 C A LPO Nonsense_Mutation p.Y448* 0.10 TCGA-85-8481-01 17 7577046 7577046 C A TP53 Nonsense_Mutation p.E298* 0.16 TCGA-85-8481-01 17 79804419 79804419 G A P4HB Silent p.A314A 0.21 TCGA-85-8481-01 18 2544224 2544224 T C METTL4 Missense_Mutation p.T415A 0.25 tolerated(0.65) benign(0.013) TCGA-85-8481-01 18 39593517 39593517 G C PIK3C3 Missense_Mutation p.E428Q 0.22 tolerated(0.29) possibly_damaging(0.511) TCGA-85-8481-01 18 51820396 51820396 A G POLI Silent p.V594V 0.15 TCGA-85-8481-01 18 56964092 56964092 C A CPLX4 Silent p.R107R 0.21 TCGA-85-8481-01 18 70417371 70417371 G A NETO1 Silent p.A489A 0.11 TCGA-85-8481-01 18 72345333 72345333 A G ZNF407 Silent p.K786K 0.17 TCGA-85-8481-01 18 74091030 74091030 C A ZNF516 Missense_Mutation p.A1014S 0.26 tolerated(0.24) benign(0.112) TCGA-85-8481-01 18 74091031 74091031 C A ZNF516 Silent p.L1013L 0.26 TCGA-85-8481-01 18 74962925 74962925 C T GALR1 Missense_Mutation p.R141W 0.07 deleterious(0.03) probably_damaging(0.964) TCGA-85-8481-01 19 1051566 1051566 G C ABCA7 Silent p.L981L 0.25 TCGA-85-8481-01 19 11333497 11333497 C A DOCK6 Nonsense_Mutation p.E1052* 0.36 TCGA-85-8481-01 19 14862334 14862334 G T EMR2 Silent p.L646L 0.23 TCGA-85-8481-01 19 15996744 15996744 C T CYP4F2 Missense_Mutation p.E369K 0.14 deleterious(0.03) possibly_damaging(0.772) TCGA-85-8481-01 19 19168390 19168390 G C ARMC6 Missense_Mutation p.E487Q 0.14 tolerated(0.05) possibly_damaging(0.687) TCGA-85-8481-01 19 2989308 2989308 A G TLE6 Missense_Mutation p.I330M 0.16 deleterious(0) benign(0.102) TCGA-85-8481-01 19 36029256 36029256 G T GAPDHS Missense_Mutation p.G98V 0.16 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-85-8481-01 19 36034606 36034606 T A GAPDHS Missense_Mutation p.D311E 0.10 deleterious_low_confidence(0) benign(0.335) TCGA-85-8481-01 19 36430656 36430656 G T LRFN3 Missense_Mutation p.R110L 0.09 deleterious(0) probably_damaging(0.996) TCGA-85-8481-01 19 38990562 38990562 C A RYR1 Missense_Mutation p.P2410Q 0.14 benign(0.152) TCGA-85-8481-01 19 40541276 40541276 C A ZNF780B Missense_Mutation p.G497V 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-85-8481-01 19 42221603 42221603 G A CEACAM5 Silent p.Q396Q 0.07 TCGA-85-8481-01 19 43772053 43772053 C T PSG9 Missense_Mutation p.A105T 0.09 deleterious(0) probably_damaging(0.923) TCGA-85-8481-01 19 45488477 45488477 G A CLPTM1 Missense_Mutation p.M196I 0.19 tolerated(0.07) benign(0.14) TCGA-85-8481-01 19 47422054 47422054 G A ARHGAP35 Missense_Mutation p.R41H 0.05 deleterious(0) probably_damaging(0.999) TCGA-85-8481-01 19 51214736 51214736 C T SHANK1 Silent p.Q323Q 0.25 TCGA-85-8481-01 19 51768624 51768624 C A SIGLECL1 Missense_Mutation p.P9T 0.14 deleterious(0) unknown(0) TCGA-85-8481-01 19 53079214 53079214 G T ZNF701 Missense_Mutation p.A94S 0.16 deleterious(0.03) benign(0.13) TCGA-85-8481-01 19 55686627 55686627 G C SYT5 Missense_Mutation p.I207M 0.15 deleterious(0.03) probably_damaging(0.996) TCGA-85-8481-01 19 5623277 5623277 T C SAFB Missense_Mutation p.S21P 0.27 tolerated(0.35) benign(0.307) TCGA-85-8481-01 19 56372761 56372761 C A NLRP4 Nonsense_Mutation p.Y622* 0.12 TCGA-85-8481-01 19 56392900 56392900 C T NLRP4 Missense_Mutation p.P978S 0.18 tolerated(0.07) possibly_damaging(0.677) TCGA-85-8481-01 19 6731068 6731068 G A GPR108 Nonsense_Mutation p.Q497* 0.22 TCGA-85-8481-01 19 6750343 6750343 G - TRIP10 Frame_Shift_Del p.G424Efs*4 0.20 TCGA-85-8481-01 19 9064021 9064021 G C MUC16 Missense_Mutation p.L7809V 0.16 unknown(0) TCGA-85-8481-01 1 10364774 10364774 G A KIF1B Intron 0.23 TCGA-85-8481-01 1 107867108 107867108 A T NTNG1 Missense_Mutation p.T151S 0.18 deleterious(0.05) probably_damaging(0.998) TCGA-85-8481-01 1 149895465 149895465 C T SF3B4 Missense_Mutation p.R415Q 0.14 deleterious_low_confidence(0) unknown(0) TCGA-85-8481-01 1 156039979 156039979 A G RAB25 Silent p.R181R 0.13 TCGA-85-8481-01 1 157648425 157648425 G T FCRL3 3'UTR 0.24 TCGA-85-8481-01 1 157648426 157648426 G A FCRL3 3'UTR 0.23 TCGA-85-8481-01 1 157737052 157737052 C A FCRL2 Missense_Mutation p.Q377H 0.06 deleterious(0.05) benign(0.098) TCGA-85-8481-01 1 157739902 157739902 G T FCRL2 Missense_Mutation p.Q117K 0.08 tolerated(0.2) benign(0.177) TCGA-85-8481-01 1 158259829 158259829 G T CD1C 5'UTR 0.09 TCGA-85-8481-01 1 158627408 158627408 A T SPTA1 Silent p.A888A 0.08 TCGA-85-8481-01 1 158687593 158687593 G T OR6K3 Missense_Mutation p.H105N 0.12 deleterious(0) probably_damaging(0.992) TCGA-85-8481-01 1 159175826 159175826 C A DARC Nonsense_Mutation p.Y201* 0.12 TCGA-85-8481-01 1 160097382 160097382 G A ATP1A2 Silent p.T263T 0.08 TCGA-85-8481-01 1 160144478 160144478 C A ATP1A4 Missense_Mutation p.A751E 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-85-8481-01 1 165678713 165678713 G T RP11-466F5.10 5'Flank 0.27 TCGA-85-8481-01 1 169564103 169564103 G T SELP Nonsense_Mutation p.S705* 0.20 TCGA-85-8481-01 1 17295788 17295788 C T CROCC Silent p.L1752L 0.25 TCGA-85-8481-01 1 179520226 179520226 G T NPHS2 3'UTR 0.29 TCGA-85-8481-01 1 185970748 185970748 A T HMCN1 Missense_Mutation p.Q1408L 0.15 probably_damaging(0.928) TCGA-85-8481-01 1 186043996 186043996 G A HMCN1 Missense_Mutation p.E2755K 0.11 probably_damaging(0.994) TCGA-85-8481-01 1 190067363 190067363 G - BRINP3 Frame_Shift_Del p.Q696Rfs*9 0.09 TCGA-85-8481-01 1 207643407 207643407 C A CR2 Silent p.A395A 0.16 TCGA-85-8481-01 1 209961888 209961894 GTCTGGG - IRF6 Frame_Shift_Del p.P426Sfs*9 0.12 TCGA-85-8481-01 1 214820558 214820558 C A CENPF Missense_Mutation p.Q2549K 0.17 benign(0.266) TCGA-85-8481-01 1 215408562 215408562 G C KCNK2 3'UTR 0.26 TCGA-85-8481-01 1 215960097 215960097 G T USH2A Silent p.S3434S 0.11 TCGA-85-8481-01 1 215990524 215990524 C A USH2A Missense_Mutation p.D3129Y 0.13 possibly_damaging(0.482) TCGA-85-8481-01 1 228246690 228246690 A G WNT3A Missense_Mutation p.I195V 0.16 tolerated(0.53) benign(0.015) TCGA-85-8481-01 1 23763538 23763538 C T ASAP3 Splice_Site p.X448_splice 0.15 TCGA-85-8481-01 1 240072356 240072356 C A CHRM3 Silent p.I535I 0.13 TCGA-85-8481-01 1 240256738 240256738 C G FMN2 Missense_Mutation p.I443M 0.21 unknown(0) TCGA-85-8481-01 1 2428411 2428411 A G PLCH2 Missense_Mutation p.Y666C 0.19 deleterious(0) probably_damaging(0.978) TCGA-85-8481-01 1 247492111 247492111 C G ZNF496 Missense_Mutation p.E150Q 0.11 deleterious(0.01) probably_damaging(0.987) TCGA-85-8481-01 1 248525542 248525542 C A OR2T4 Silent p.S220S 0.11 TCGA-85-8481-01 1 26440926 26440926 G A PDIK1L Missense_Mutation p.A43T 0.15 tolerated(0.41) benign(0.055) TCGA-85-8481-01 1 29189481 29189481 G C OPRD1 Missense_Mutation p.A269P 0.24 deleterious(0.01) probably_damaging(0.984) TCGA-85-8481-01 1 31346158 31346158 C T SDC3 Missense_Mutation p.R410H 0.16 deleterious(0) unknown(0) TCGA-85-8481-01 1 37337928 37337928 T C GRIK3 Missense_Mutation p.Y198C 0.09 tolerated(0.09) possibly_damaging(0.903) TCGA-85-8481-01 1 65830439 65830439 A G DNAJC6 Silent p.T105T 0.13 TCGA-85-8481-01 1 66834589 66834589 G T PDE4B Silent p.R594R 0.04 TCGA-85-8481-01 1 70504715 70504715 C A LRRC7 Missense_Mutation p.Q1032K 0.13 deleterious(0.02) probably_damaging(0.966) TCGA-85-8481-01 1 70904505 70904505 C T CTH Missense_Mutation p.A396V 0.11 deleterious(0.05) benign(0.001) TCGA-85-8481-01 1 75102053 75102053 T A C1orf173 Missense_Mutation p.N172Y 0.16 tolerated(0.08) benign(0.069) TCGA-85-8481-01 20 17240931 17240932 - A PCSK2 Frame_Shift_Ins p.A77Gfs*29 0.16 TCGA-85-8481-01 20 20278934 20278934 C T C20orf26 Missense_Mutation p.P1109L 0.12 deleterious(0) probably_damaging(0.95) TCGA-85-8481-01 20 31017721 31017721 G A ASXL1 Missense_Mutation p.A195T 0.10 deleterious(0.04) probably_damaging(0.998) TCGA-85-8481-01 20 31017727 31017727 G T ASXL1 Missense_Mutation p.G197C 0.21 deleterious(0) probably_damaging(1) TCGA-85-8481-01 20 41076917 41076917 C A PTPRT Missense_Mutation p.K501N 0.11 tolerated(0.12) benign(0.008) TCGA-85-8481-01 20 42088505 42088505 T A SRSF6 Silent p.L117L 0.18 TCGA-85-8481-01 20 43739071 43739071 A T WFDC5 Missense_Mutation p.C113S 0.23 deleterious(0) probably_damaging(1) TCGA-85-8481-01 20 47633926 47633926 T A ARFGEF2 Splice_Site p.X1485_splice 0.26 TCGA-85-8481-01 20 48098861 48098861 G C KCNB1 Missense_Mutation p.P53A 0.12 deleterious(0) probably_damaging(1) TCGA-85-8481-01 20 54824481 54824481 C T MC3R Silent p.T194T 0.16 TCGA-85-8481-01 20 61915226 61915226 G A ARFGAP1 Silent p.P247P 0.24 TCGA-85-8481-01 20 8755330 8755330 T C PLCB1 Silent p.Y1025Y 0.15 TCGA-85-8481-01 21 10906841 10906841 A T TPTE 3'UTR 0.11 TCGA-85-8481-01 21 11029702 11029702 G T BAGE2 RNA 0.05 TCGA-85-8481-01 21 16337272 16337272 C A NRIP1 Missense_Mutation p.S1081I 0.04 tolerated(0.21) benign(0.216) TCGA-85-8481-01 21 19737525 19737525 A T TMPRSS15 Silent p.S235S 0.08 TCGA-85-8481-01 21 28327070 28327070 C T ADAMTS5 Missense_Mutation p.A409T 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-85-8481-01 21 37444910 37444910 C G CBR1 Silent p.G188G 0.17 TCGA-85-8481-01 21 46032530 46032530 C T KRTAP10-8 Silent p.C171C 0.08 TCGA-85-8481-01 22 25158324 25158324 A T PIWIL3 Intron 0.19 TCGA-85-8481-01 2 105886088 105886088 G A TGFBRAP1 Silent p.L683L 0.42 TCGA-85-8481-01 2 109429285 109429285 G A CCDC138 Missense_Mutation p.E315K 0.28 deleterious(0) possibly_damaging(0.502) TCGA-85-8481-01 2 128177549 128177549 G C PROC Missense_Mutation p.V11L 0.06 tolerated(0.61) benign(0.003) TCGA-85-8481-01 2 138030151 138030151 C A THSD7B Missense_Mutation p.A772E 0.19 deleterious(0) possibly_damaging(0.765) TCGA-85-8481-01 2 141665595 141665595 T A LRP1B Missense_Mutation p.D1124V 0.19 probably_damaging(0.992) TCGA-85-8481-01 2 141816571 141816571 T A LRP1B Missense_Mutation p.N430I 0.16 benign(0) TCGA-85-8481-01 2 144381779 144381779 G T ARHGAP15 Nonsense_Mutation p.E361* 0.10 TCGA-85-8481-01 2 144525623 144525623 C A ARHGAP15 Missense_Mutation p.T437N 0.10 deleterious(0) probably_damaging(0.989) TCGA-85-8481-01 2 152112092 152112092 T C RBM43 Missense_Mutation p.T57A 0.09 deleterious(0) possibly_damaging(0.742) TCGA-85-8481-01 2 152466546 152466546 A G NEB Missense_Mutation p.I4036T 0.18 benign(0.349) TCGA-85-8481-01 2 163695011 163695011 C - KCNH7 Frame_Shift_Del p.H7Mfs*45 0.14 TCGA-85-8481-01 2 166210874 166210874 G T SCN2A Missense_Mutation p.R1031M 0.13 tolerated(0.08) possibly_damaging(0.69) TCGA-85-8481-01 2 166210875 166210875 G T SCN2A Missense_Mutation p.R1031S 0.13 tolerated(0.2) benign(0.096) TCGA-85-8481-01 2 166535655 166535655 G T CSRNP3 Missense_Mutation p.D384Y 0.11 tolerated(0.05) possibly_damaging(0.598) TCGA-85-8481-01 2 169787191 169787191 G T ABCB11 Missense_Mutation p.P1132H 0.09 deleterious(0) probably_damaging(0.999) TCGA-85-8481-01 2 170011053 170011053 G A LRP2 Missense_Mutation p.S4071F 0.20 probably_damaging(0.924) TCGA-85-8481-01 2 170059282 170059282 C G LRP2 Missense_Mutation p.E2731D 0.06 probably_damaging(0.999) TCGA-85-8481-01 2 172930446 172930446 G T METAP1D Missense_Mutation p.V155L 0.14 deleterious(0) probably_damaging(0.974) TCGA-85-8481-01 2 176983712 176983712 A T HOXD10 Missense_Mutation p.N259I 0.10 deleterious(0) probably_damaging(0.991) TCGA-85-8481-01 2 177054799 177054799 C T HOXD1 Missense_Mutation p.L306F 0.13 tolerated_low_confidence(0.1) benign(0.005) TCGA-85-8481-01 2 179411148 179411148 G T TTN Missense_Mutation p.A31637D 0.21 TCGA-85-8481-01 2 179583652 179583652 C G TTN Missense_Mutation p.G8092A 0.09 TCGA-85-8481-01 2 179585679 179585679 G A TTN Silent p.D7689D 0.11 TCGA-85-8481-01 2 179604523 179604523 A T TTN Silent p.A4479A 0.08 TCGA-85-8481-01 2 179641407 179641407 G T TTN Silent p.P1728P 0.10 TCGA-85-8481-01 2 186672299 186672299 A G FSIP2 Missense_Mutation p.Y6178C 0.19 probably_damaging(0.982) TCGA-85-8481-01 2 197511165 197511165 T C CCDC150 Missense_Mutation p.I38T 0.09 tolerated(0.13) benign(0.075) TCGA-85-8481-01 2 200173504 200173504 C A SATB2 Missense_Mutation p.Q573H 0.09 tolerated(1) benign(0) TCGA-85-8481-01 2 206659563 206659563 G C NRP2 Silent p.L859L 0.19 TCGA-85-8481-01 2 21233594 21233594 G C APOB Missense_Mutation p.P2049R 0.08 probably_damaging(0.998) TCGA-85-8481-01 2 21233595 21233595 G C APOB Missense_Mutation p.P2049A 0.09 probably_damaging(0.994) TCGA-85-8481-01 2 21241934 21241934 G T APOB Missense_Mutation p.S1017R 0.17 probably_damaging(0.923) TCGA-85-8481-01 2 217364720 217364720 A G RPL37A Missense_Mutation p.M61V 0.10 tolerated(0.5) benign(0.005) TCGA-85-8481-01 2 220501447 220501447 G T SLC4A3 Missense_Mutation p.V823F 0.12 deleterious(0) possibly_damaging(0.809) TCGA-85-8481-01 2 234622318 234622319 - TC UGT1A5 Frame_Shift_Ins p.A229Lfs*35 0.18 TCGA-85-8481-01 2 241976323 241976323 T G SNED1 Missense_Mutation p.C308G 0.15 deleterious(0) probably_damaging(0.998) TCGA-85-8481-01 2 242684270 242684270 G T D2HGDH Missense_Mutation p.R277S 0.16 tolerated(0.48) benign(0.006) TCGA-85-8481-01 2 26673477 26673477 T C DRC1 Silent p.S539S 0.16 TCGA-85-8481-01 2 27150149 27150149 G A DPYSL5 Missense_Mutation p.R150K 0.17 tolerated(1) possibly_damaging(0.492) TCGA-85-8481-01 2 48808331 48808331 T C STON1-GTF2A1L Missense_Mutation p.W187R 0.11 deleterious(0) probably_damaging(0.999) TCGA-85-8481-01 2 61315304 61315304 T C KIAA1841 Missense_Mutation p.C301R 0.21 deleterious(0.03) probably_damaging(0.972) TCGA-85-8481-01 2 69098534 69098534 C A BMP10 5'UTR 0.14 TCGA-85-8481-01 2 71361791 71361791 A G MPHOSPH10 Missense_Mutation p.N321S 0.22 tolerated(1) benign(0.005) TCGA-85-8481-01 2 74474312 74474312 T G SLC4A5 Missense_Mutation p.E637A 0.20 deleterious(0) probably_damaging(1) TCGA-85-8481-01 2 74531709 74531709 C A SLC4A5 Missense_Mutation p.G60C 0.20 deleterious_low_confidence(0.02) benign(0.001) TCGA-85-8481-01 2 79363234 79363234 C A REG1P RNA 0.17 TCGA-85-8481-01 2 85923078 85923078 C G GNLY Intron 0.27 TCGA-85-8481-01 2 88396204 88396204 G T SMYD1 Missense_Mutation p.K263N 0.11 deleterious(0.01) benign(0.356) TCGA-85-8481-01 2 95780907 95780907 C A MRPS5 Missense_Mutation p.A61S 0.15 tolerated(0.94) benign(0.013) TCGA-85-8481-01 3 101083778 101083778 T A SENP7 Missense_Mutation p.K459M 0.20 deleterious(0.01) probably_damaging(0.95) TCGA-85-8481-01 3 108476027 108476027 C - RETNLB Frame_Shift_Del p.P3Rfs*9 0.08 TCGA-85-8481-01 3 113375407 113375407 T G KIAA2018 Silent p.R1708R 0.18 TCGA-85-8481-01 3 113955816 113955816 C A ZNF80 Nonsense_Mutation p.G36* 0.20 TCGA-85-8481-01 3 118937530 118937530 C - B4GALT4 Frame_Shift_Del p.G255Dfs*18 0.20 TCGA-85-8481-01 3 119905513 119905513 T C GPR156 Missense_Mutation p.S198G 0.05 deleterious(0.01) benign(0.43) TCGA-85-8481-01 3 121356092 121356092 C A HCLS1 Missense_Mutation p.G156C 0.13 deleterious(0) unknown(0) TCGA-85-8481-01 3 128809915 128809915 C G RAB43 3'UTR 0.29 TCGA-85-8481-01 3 167728067 167728067 G T GOLIM4 Missense_Mutation p.A694D 0.12 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-85-8481-01 3 180366116 180366116 C A CCDC39 Missense_Mutation p.G400V 0.29 deleterious(0.01) benign(0.162) TCGA-85-8481-01 3 180381735 180381735 C T CCDC39 Missense_Mutation p.E44K 0.05 tolerated(0.31) benign(0.056) TCGA-85-8481-01 3 193129995 193129995 T C ATP13A4 Silent p.K1060K 0.15 TCGA-85-8481-01 3 195490416 195490416 C A MUC4 Missense_Mutation p.G4714V 0.36 probably_damaging(0.993) TCGA-85-8481-01 3 195789795 195789795 C A TFRC Missense_Mutation p.S445I 0.15 deleterious(0) possibly_damaging(0.85) TCGA-85-8481-01 3 48677392 48677392 C T CELSR3 Missense_Mutation p.S3209N 0.14 deleterious_low_confidence(0.03) benign(0.005) TCGA-85-8481-01 3 48690513 48690513 C A CELSR3 Silent p.R1852R 0.22 TCGA-85-8481-01 3 98109852 98109852 C T OR5K3 Silent p.L115L 0.07 TCGA-85-8481-01 4 100815150 100815150 C A LAMTOR3 5'UTR 0.14 TCGA-85-8481-01 4 102839160 102839160 C T BANK1 Silent p.F340F 0.15 TCGA-85-8481-01 4 109971333 109971333 G T COL25A1 Missense_Mutation p.P124T 0.13 tolerated(0.06) unknown(0) TCGA-85-8481-01 4 113359775 113359775 A G ALPK1 Missense_Mutation p.I1108M 0.16 tolerated(0.06) probably_damaging(0.955) TCGA-85-8481-01 4 114899841 114899841 T A ARSJ Missense_Mutation p.L50F 0.08 tolerated_low_confidence(0.21) benign(0.067) TCGA-85-8481-01 4 155156592 155156592 C A DCHS2 Missense_Mutation p.W2616L 0.15 deleterious(0.03) benign(0.038) TCGA-85-8481-01 4 40122471 40122471 A T N4BP2 Missense_Mutation p.T914S 0.22 tolerated(0.11) benign(0.342) TCGA-85-8481-01 4 47163272 47163272 A G GABRB1 Missense_Mutation p.T83A 0.09 deleterious(0) probably_damaging(0.999) TCGA-85-8481-01 4 68472090 68472090 G A STAP1 3'UTR 0.18 TCGA-85-8481-01 4 85416876 85416876 G T NKX6-1 Silent p.P264P 0.09 TCGA-85-8481-01 4 85729525 85729525 G T WDFY3 Silent p.L797L 0.10 TCGA-85-8481-01 5 101834291 101834291 C A SLCO6A1 Missense_Mutation p.E86D 0.23 tolerated(0.06) possibly_damaging(0.669) TCGA-85-8481-01 5 10461376 10461376 G C ROPN1L Missense_Mutation p.K166N 0.11 tolerated(0.12) benign(0.038) TCGA-85-8481-01 5 115298992 115298992 C A AQPEP Silent p.T226T 0.13 TCGA-85-8481-01 5 115336784 115336784 A T AQPEP Silent p.T556T 0.18 TCGA-85-8481-01 5 13721306 13721306 C T DNAH5 Missense_Mutation p.V4028I 0.28 benign(0.299) TCGA-85-8481-01 5 139941751 139941751 T C APBB3 Missense_Mutation p.H187R 0.25 tolerated(0.95) benign(0.009) TCGA-85-8481-01 5 140552753 140552753 C T PCDHB7 Missense_Mutation p.P113S 0.23 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-85-8481-01 5 140559427 140559427 G T PCDHB8 Silent p.S604S 0.12 TCGA-85-8481-01 5 140573467 140573467 G T PCDHB10 Missense_Mutation p.A448S 0.22 deleterious_low_confidence(0.03) benign(0.121) TCGA-85-8481-01 5 158750268 158750268 G - IL12B Frame_Shift_Del p.P53Lfs*17 0.14 TCGA-85-8481-01 5 178562942 178562942 C A ADAMTS2 Missense_Mutation p.A685S 0.16 tolerated(0.09) benign(0.024) TCGA-85-8481-01 5 21975308 21975308 G T CDH12 Missense_Mutation p.L140M 0.13 tolerated(0.12) benign(0.381) TCGA-85-8481-01 5 24537676 24537676 G T CDH10 Silent p.A113A 0.12 TCGA-85-8481-01 5 35065699 35065699 G A PRLR Missense_Mutation p.A454V 0.14 tolerated(0.25) benign(0.03) TCGA-85-8481-01 5 35697791 35697791 G T SPEF2 Splice_Site p.X680_splice 0.21 TCGA-85-8481-01 5 5486895 5486895 G A KIAA0947 Silent p.S2194S 0.21 TCGA-85-8481-01 5 67591071 67591071 A C PIK3R1 Missense_Mutation p.E555A 0.29 tolerated(0.09) benign(0.181) TCGA-85-8481-01 5 76621532 76621532 T G PDE8B Missense_Mutation p.F190V 0.33 tolerated(0.07) possibly_damaging(0.734) TCGA-85-8481-01 5 99871346 99871346 G C FAM174A Missense_Mutation p.E38Q 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.832) TCGA-85-8481-01 6 116833295 116833295 C A FAM26E Missense_Mutation p.P146T 0.17 tolerated(0.72) benign(0.01) TCGA-85-8481-01 6 117203562 117203562 A G RFX6 Silent p.T179T 0.15 TCGA-85-8481-01 6 124979566 124979566 C A NKAIN2 Intron 0.19 TCGA-85-8481-01 6 124979567 124979567 C A NKAIN2 Intron 0.17 TCGA-85-8481-01 6 128040899 128040899 C A THEMIS Missense_Mutation p.G649C 0.21 deleterious_low_confidence(0) probably_damaging(1) TCGA-85-8481-01 6 130505654 130505654 C A SAMD3 Silent p.P166P 0.17 TCGA-85-8481-01 6 130505689 130505689 C A SAMD3 Missense_Mutation p.D155Y 0.12 deleterious(0) probably_damaging(0.954) TCGA-85-8481-01 6 132061462 132061462 G T ENPP3 Missense_Mutation p.W800L 0.13 tolerated(0.2) benign(0.158) TCGA-85-8481-01 6 134210670 134210670 G A TCF21 Silent p.E45E 0.23 TCGA-85-8481-01 6 138656290 138656290 A T KIAA1244 Missense_Mutation p.S2103C 0.14 deleterious_low_confidence(0) possibly_damaging(0.75) TCGA-85-8481-01 6 144854319 144854319 C G UTRN Missense_Mutation p.S2052R 0.14 tolerated(0.22) benign(0.014) TCGA-85-8481-01 6 149285701 149285701 T C UST Splice_Site p.X227_splice 0.16 TCGA-85-8481-01 6 152784643 152784643 G T SYNE1 Silent p.R648R 0.09 TCGA-85-8481-01 6 24576616 24576616 C T KIAA0319 Missense_Mutation p.G572S 0.18 tolerated(0.5) benign(0.01) TCGA-85-8481-01 6 32411551 32411551 C T HLA-DRA Missense_Mutation p.P210L 0.23 tolerated(0.11) benign(0.105) TCGA-85-8481-01 6 37298906 37298906 C A TBC1D22B Silent p.L492L 0.20 TCGA-85-8481-01 6 51483867 51483867 C A PKHD1 3'UTR 0.06 TCGA-85-8481-01 6 51910942 51910942 G T PKHD1 Missense_Mutation p.Q818K 0.12 tolerated(0.05) benign(0.291) TCGA-85-8481-01 6 52697719 52697719 C G GSTA5 Missense_Mutation p.E162Q 0.20 tolerated(0.1) possibly_damaging(0.635) TCGA-85-8481-01 6 54805821 54805821 A G FAM83B Silent p.V684V 0.07 TCGA-85-8481-01 6 70070787 70070787 C A BAI3 Silent p.R1208R 0.18 TCGA-85-8481-01 6 71665586 71665586 A G B3GAT2 Missense_Mutation p.F183L 0.13 deleterious(0) possibly_damaging(0.762) TCGA-85-8481-01 6 82936980 82936980 T G IBTK Missense_Mutation p.K195Q 0.20 tolerated(0.16) benign(0.035) TCGA-85-8481-01 6 84834983 84834983 T C KIAA1009 Missense_Mutation p.T1340A 0.11 tolerated(0.15) probably_damaging(0.999) TCGA-85-8481-01 6 86201863 86201863 T A NT5E Missense_Mutation p.M510K 0.17 deleterious(0) probably_damaging(0.925) TCGA-85-8481-01 6 88049994 88049994 A G SMIM8 3'UTR 0.22 TCGA-85-8481-01 7 103124143 103124143 T G RELN Missense_Mutation p.K3380Q 0.20 tolerated(0.25) possibly_damaging(0.821) TCGA-85-8481-01 7 107557786 107557786 T A DLD Missense_Mutation p.I372N 0.21 deleterious(0) possibly_damaging(0.84) TCGA-85-8481-01 7 131853063 131853063 C A PLXNA4 Missense_Mutation p.R1429M 0.32 deleterious(0) probably_damaging(0.999) TCGA-85-8481-01 7 132174121 132174121 G T PLXNA4 Missense_Mutation p.S434Y 0.11 deleterious(0) probably_damaging(1) TCGA-85-8481-01 7 133948809 133948809 A G LRGUK 3'UTR 0.23 TCGA-85-8481-01 7 147336235 147336235 G T CNTNAP2 Missense_Mutation p.Q645H 0.16 deleterious(0.04) possibly_damaging(0.593) TCGA-85-8481-01 7 149489013 149489013 C T SSPO RNA 0.20 TCGA-85-8481-01 7 2262377 2262377 G A MAD1L1 Missense_Mutation p.R102C 0.10 deleterious(0) probably_damaging(0.993) TCGA-85-8481-01 7 31690781 31690781 T C CCDC129 Missense_Mutation p.M896T 0.09 deleterious(0) possibly_damaging(0.628) TCGA-85-8481-01 7 4815369 4815370 - T AP5Z1 Frame_Shift_Ins p.L9Ffs*22 0.08 TCGA-85-8481-01 7 51096399 51096399 C A COBL Silent p.T798T 0.16 TCGA-85-8481-01 7 86990815 86990815 A C CROT Missense_Mutation p.K145T 0.12 tolerated(0.19) possibly_damaging(0.579) TCGA-85-8481-01 7 87082436 87082436 G C ABCB4 Nonsense_Mutation p.Y120* 0.08 TCGA-85-8481-01 7 87178694 87178694 G A ABCB1 Silent p.S565S 0.17 TCGA-85-8481-01 7 91632130 91632130 A G AKAP9 Missense_Mutation p.K967E 0.17 benign(0.088) TCGA-85-8481-01 7 93065365 93065365 G T CALCR Missense_Mutation p.P384T 0.22 deleterious(0) probably_damaging(0.999) TCGA-85-8481-01 8 120816192 120816192 C A TAF2 Silent p.V162V 0.13 TCGA-85-8481-01 8 121551011 121551011 G T SNTB1 3'UTR 0.22 TCGA-85-8481-01 8 125535245 125535245 T A TATDN1 Splice_Site p.X8_splice 0.25 TCGA-85-8481-01 8 12580515 12580515 A T LONRF1 3'UTR 0.16 TCGA-85-8481-01 8 139715589 139715589 C A COL22A1 Missense_Mutation p.G840V 0.32 probably_damaging(1) TCGA-85-8481-01 8 139838932 139838932 C A COL22A1 Missense_Mutation p.W313L 0.09 unknown(0) TCGA-85-8481-01 8 142477601 142477601 C A MROH5 3'UTR 0.31 TCGA-85-8481-01 8 144297296 144297296 G T GPIHBP1 Missense_Mutation p.G153V 0.08 tolerated(0.1) probably_damaging(0.972) TCGA-85-8481-01 8 144990840 144990840 G A PLEC Silent p.A4520A 0.08 TCGA-85-8481-01 8 145112397 145112397 C A OPLAH Missense_Mutation p.R459L 0.39 deleterious(0.02) possibly_damaging(0.815) TCGA-85-8481-01 8 26722006 26722006 G T ADRA1A Missense_Mutation p.P161T 0.19 deleterious(0.01) probably_damaging(1) TCGA-85-8481-01 8 37707227 37707227 C G BRF2 Missense_Mutation p.Q25H 0.09 deleterious(0.04) probably_damaging(0.93) TCGA-85-8481-01 8 52232430 52232430 C A PXDNL 3'UTR 0.09 TCGA-85-8481-01 8 72959428 72959428 G T TRPA1 Missense_Mutation p.F640L 0.08 tolerated(0.67) benign(0.001) TCGA-85-8481-01 8 77767938 77767938 G C ZFHX4 Silent p.P2927P 0.09 TCGA-85-8481-01 8 87541353 87541353 G A CPNE3 Splice_Site p.X104_splice 0.24 TCGA-85-8481-01 8 97797471 97797471 G T CPQ Nonsense_Mutation p.G116* 0.08 TCGA-85-8481-01 8 97797472 97797472 G T CPQ Missense_Mutation p.G116V 0.08 deleterious(0.01) possibly_damaging(0.528) TCGA-85-8481-01 8 98735126 98735126 C T MTDH Missense_Mutation p.P514L 0.29 tolerated(0.78) benign(0.02) TCGA-85-8481-01 9 109687060 109687060 G T ZNF462 Silent p.P289P 0.10 TCGA-85-8481-01 9 118949713 118949713 C A PAPPA Silent p.T232T 0.13 TCGA-85-8481-01 9 125512586 125512586 C A OR1L6 Missense_Mutation p.H154N 0.08 tolerated(0.69) possibly_damaging(0.89) TCGA-85-8481-01 9 125936071 125936071 G A STRBP Missense_Mutation p.A92V 0.07 deleterious(0.02) probably_damaging(0.993) TCGA-85-8481-01 9 12821419 12821419 G T LURAP1L Missense_Mutation p.R116L 0.21 deleterious(0.01) possibly_damaging(0.878) TCGA-85-8481-01 9 133499050 133499050 G A FUBP3 Silent p.R309R 0.15 TCGA-85-8481-01 9 134165472 134165472 A - PPAPDC3 Frame_Shift_Del p.K30Rfs*44 0.27 TCGA-85-8481-01 9 135206469 135206469 T A SETX Silent p.V356V 0.13 TCGA-85-8481-01 9 137987784 137987784 G A OLFM1 Missense_Mutation p.M107I 0.08 tolerated(0.32) benign(0.001) TCGA-85-8481-01 9 137990227 137990227 G T OLFM1 Missense_Mutation p.E166D 0.13 tolerated(0.11) possibly_damaging(0.636) TCGA-85-8481-01 9 140327672 140327672 G A NOXA1 Missense_Mutation p.G289E 0.12 tolerated(0.42) benign(0.084) TCGA-85-8481-01 9 21802652 21802652 C T MTAP 5'UTR 0.25 TCGA-85-8481-01 9 32632722 32632722 G A TAF1L Silent p.N952N 0.20 TCGA-85-8481-01 9 70177770 70177770 C G FOXD4L5 Missense_Mutation p.E72Q 0.10 tolerated(0.07) probably_damaging(0.932) TCGA-85-8481-01 9 79635187 79635187 C G FOXB2 Missense_Mutation p.S206W 0.18 deleterious_low_confidence(0) unknown(0) TCGA-85-8481-01 9 95797857 95797857 G T FGD3 Missense_Mutation p.A722S 0.11 tolerated_low_confidence(0.09) benign(0.012) TCGA-85-8481-01 9 97864038 97864038 G T FANCC Nonsense_Mutation p.S543* 0.23 TCGA-85-8481-01 9 99798824 99798824 G A CTSV Missense_Mutation p.S201F 0.08 deleterious(0.03) possibly_damaging(0.545) TCGA-85-8481-01 X 106871920 106871920 A T PRPS1 Missense_Mutation p.D21V 0.36 deleterious(0.05) benign(0.028) TCGA-85-8481-01 X 147003466 147003466 G A FMR1 Missense_Mutation p.V23I 0.25 tolerated(0.25) benign(0.124) TCGA-85-8481-01 X 19854253 19854253 T A SH3KBP1 Missense_Mutation p.N51I 0.29 deleterious(0) benign(0.001) TCGA-85-8481-01 X 22095712 22095712 C T PHEX Silent p.F185F 0.16 TCGA-85-8481-01 X 27765735 27765735 C A DCAF8L2 Silent p.T241T 0.27 TCGA-85-8481-01 X 30864703 30864703 C A TAB3 Missense_Mutation p.C590F 0.44 deleterious(0) probably_damaging(0.997) TCGA-85-8481-01 X 64958832 64958832 G T MSN Missense_Mutation p.A449S 0.24 tolerated(0.22) probably_damaging(0.964) TCGA-85-8481-01 X 69263341 69263341 A G AWAT2 Silent p.Y153Y 0.26 TCGA-85-8481-01 X 70757747 70757747 G A OGT Missense_Mutation p.G96E 0.27 deleterious(0.01) possibly_damaging(0.603) TCGA-85-8481-01 X 73071798 73071798 C A XIST RNA 0.26 TCGA-85-8481-01 X 83129354 83129354 A G CYLC1 Silent p.E546E 0.26 TCGA-85-8481-01 X 89177620 89177620 C A TGIF2LX Missense_Mutation p.P179H 0.25 deleterious(0) possibly_damaging(0.84) TCGA-85-8481-01 Y 4967594 4967594 C - PCDH11Y Frame_Shift_Del p.P659Qfs*17 0.25 TCGA-85-8580-01 10 135097478 135097478 G A TUBGCP2 Nonsense_Mutation p.R713* 0.07 TCGA-85-8580-01 10 15648391 15648391 G T ITGA8 Missense_Mutation p.P599T 0.20 deleterious(0) probably_damaging(1) TCGA-85-8580-01 10 17882741 17882741 G T MRC1L1 Silent p.L284L 0.13 TCGA-85-8580-01 10 18957557 18957557 G A ARL5B Missense_Mutation p.G69D 0.14 deleterious(0.02) possibly_damaging(0.697) TCGA-85-8580-01 10 28438912 28438912 T A MPP7 Missense_Mutation p.D78V 0.06 deleterious(0.04) possibly_damaging(0.801) TCGA-85-8580-01 10 30318155 30318155 C T KIAA1462 Missense_Mutation p.A308T 0.20 tolerated(0.57) benign(0.229) TCGA-85-8580-01 10 55568999 55568999 C T PCDH15 Missense_Mutation p.S538N 0.22 deleterious_low_confidence(0.01) unknown(0) TCGA-85-8580-01 10 69908115 69908115 A G MYPN Missense_Mutation p.Q379R 0.23 tolerated(0.44) benign(0.201) TCGA-85-8580-01 10 70143672 70143672 C A RUFY2 Splice_Site p.X310_splice 0.20 TCGA-85-8580-01 11 108385444 108385444 T C EXPH5 Missense_Mutation p.N264D 0.14 deleterious(0.04) possibly_damaging(0.834) TCGA-85-8580-01 11 110450004 110450004 C G ARHGAP20 3'UTR 0.12 TCGA-85-8580-01 11 117062988 117062988 A T SIDT2 Missense_Mutation p.T631S 0.32 tolerated(0.6) benign(0.011) TCGA-85-8580-01 11 117109513 117109513 G - RNF214 Frame_Shift_Del p.G102Afs*8 0.24 TCGA-85-8580-01 11 117711900 117711900 C A FXYD6 Splice_Site p.X58_splice 0.13 TCGA-85-8580-01 11 122930829 122930829 T C HSPA8 Missense_Mutation p.K187E 0.10 deleterious_low_confidence(0.01) benign(0.005) TCGA-85-8580-01 11 1264018 1264018 A G MUC5B Missense_Mutation p.S1970G 0.29 unknown(0) TCGA-85-8580-01 11 1264194 1264194 C A MUC5B Silent p.T2028T 0.25 TCGA-85-8580-01 11 17793755 17793755 C G KCNC1 Missense_Mutation p.Q372E 0.16 tolerated(0.09) benign(0.009) TCGA-85-8580-01 11 18956441 18956441 T A MRGPRX1 5'UTR 0.16 TCGA-85-8580-01 11 3792978 3792978 T C NUP98 Missense_Mutation p.S262G 0.29 tolerated(0.24) benign(0.103) TCGA-85-8580-01 11 47612118 47612118 G A C1QTNF4 Missense_Mutation p.A82V 0.19 tolerated(1) benign(0.34) TCGA-85-8580-01 11 47612123 47612124 - A C1QTNF4 Frame_Shift_Ins p.T81Hfs*83 0.19 TCGA-85-8580-01 11 5443647 5443647 C A OR51Q1 Missense_Mutation p.L73M 0.22 tolerated(0.18) probably_damaging(0.999) TCGA-85-8580-01 11 57947457 57947457 C T OR9Q1 Missense_Mutation p.L181F 0.14 tolerated(0.08) benign(0.248) TCGA-85-8580-01 11 57982734 57982734 C A OR1S1 Missense_Mutation p.T173N 0.20 deleterious(0.01) probably_damaging(0.958) TCGA-85-8580-01 11 58190620 58190620 C A OR5B2 Missense_Mutation p.G39W 0.18 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-85-8580-01 11 62285851 62285851 T A AHNAK Missense_Mutation p.K5346N 0.21 probably_damaging(0.979) TCGA-85-8580-01 11 62300098 62300098 T A AHNAK Missense_Mutation p.K597N 0.22 possibly_damaging(0.79) TCGA-85-8580-01 11 63141257 63141257 T C SLC22A9 Silent p.N216N 0.18 TCGA-85-8580-01 11 6413348 6413348 G A SMPD1 Nonsense_Mutation p.W351* 0.28 TCGA-85-8580-01 11 64532916 64532916 C A SF1 3'UTR 0.18 TCGA-85-8580-01 11 6789590 6789590 T C OR2AG2 Missense_Mutation p.Y200C 0.09 deleterious(0) probably_damaging(1) TCGA-85-8580-01 11 75898228 75898228 G C WNT11 Missense_Mutation p.R316G 0.12 deleterious(0) probably_damaging(0.997) TCGA-85-8580-01 11 76870560 76870560 C A MYO7A Silent p.S357S 0.11 TCGA-85-8580-01 11 89405099 89405099 G - FOLH1B RNA 0.12 TCGA-85-8580-01 11 89424281 89424281 C A FOLH1B RNA 0.06 TCGA-85-8580-01 11 89424282 89424282 C A FOLH1B RNA 0.07 TCGA-85-8580-01 12 10587979 10587979 G A KLRC2 Missense_Mutation p.A73V 0.03 deleterious(0.02) possibly_damaging(0.622) TCGA-85-8580-01 12 110872961 110872961 C A ARPC3 Nonstop_Mutation p.*179Lext*45 0.10 TCGA-85-8580-01 12 112605195 112605195 C A HECTD4 Nonsense_Mutation p.E4008* 0.10 TCGA-85-8580-01 12 120882609 120882610 - A TRIAP1 3'UTR 0.22 TCGA-85-8580-01 12 122092271 122092271 G T MORN3 Missense_Mutation p.S124R 0.29 deleterious(0.04) benign(0.335) TCGA-85-8580-01 12 123105176 123105176 C G KNTC1 Intron 0.15 TCGA-85-8580-01 12 124218492 124218492 A G ATP6V0A2 Missense_Mutation p.Y223C 0.17 tolerated(0.26) benign(0.001) TCGA-85-8580-01 12 129278622 129278622 C T SLC15A4 3'UTR 0.18 TCGA-85-8580-01 12 29617570 29617570 A G OVCH1 Silent p.I665I 0.13 TCGA-85-8580-01 12 46320004 46320004 G A SCAF11 Silent p.N1160N 0.14 TCGA-85-8580-01 12 52099347 52099347 A C SCN8A Missense_Mutation p.Q427H 0.14 deleterious(0.01) benign(0.429) TCGA-85-8580-01 12 54383095 54383095 C G HOXC10 Silent p.R298R 0.26 TCGA-85-8580-01 12 55356282 55356282 C T TESPA1 Missense_Mutation p.S467N 0.19 tolerated_low_confidence(0.09) benign(0.014) TCGA-85-8580-01 12 6173445 6173445 C T VWF Missense_Mutation p.D467N 0.20 tolerated(1) benign(0.209) TCGA-85-8580-01 12 6753333 6753333 T A ACRBP Missense_Mutation p.N305I 0.21 deleterious(0.02) benign(0.043) TCGA-85-8580-01 12 6981753 6981753 C A SPSB2 Missense_Mutation p.V105L 0.13 deleterious(0) benign(0.425) TCGA-85-8580-01 12 81733056 81733056 G T PPFIA2 Missense_Mutation p.S817R 0.16 deleterious(0.02) possibly_damaging(0.508) TCGA-85-8580-01 12 94634318 94634318 C T PLXNC1 Silent p.S726S 0.12 TCGA-85-8580-01 13 103446156 103446156 C G KDELC1 Missense_Mutation p.G130A 0.31 deleterious(0) probably_damaging(0.998) TCGA-85-8580-01 13 107822963 107822963 C A FAM155A Missense_Mutation p.C420F 0.20 deleterious(0) probably_damaging(0.996) TCGA-85-8580-01 13 48955550 48955550 C T RB1 Nonsense_Mutation p.R556* 0.17 TCGA-85-8580-01 13 67800451 67800451 C A PCDH9 Nonsense_Mutation p.G708* 0.21 TCGA-85-8580-01 14 20915649 20915649 G C OSGEP Silent p.A300A 0.33 TCGA-85-8580-01 14 22265527 22265527 A G TRAV8-1 5'UTR 0.29 TCGA-85-8580-01 14 47120930 47120930 G T RPL10L Missense_Mutation p.R4S 0.16 deleterious(0.01) benign(0.104) TCGA-85-8580-01 14 50626716 50626716 C T SOS2 Missense_Mutation p.G429R 0.26 deleterious(0.02) benign(0.16) TCGA-85-8580-01 14 68215308 68215308 C G ZFYVE26 Missense_Mutation p.A2489P 0.32 deleterious(0) probably_damaging(1) TCGA-85-8580-01 14 75360086 75360086 G T DLST Missense_Mutation p.A211S 0.25 tolerated(0.53) benign(0.001) TCGA-85-8580-01 14 76905859 76905859 G T ESRRB Missense_Mutation p.G55C 0.24 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-85-8580-01 14 94935780 94935780 C G SERPINA9 Missense_Mutation p.G151A 0.27 deleterious(0) probably_damaging(0.999) TCGA-85-8580-01 15 22332671 22332671 A T RP11-69H14.6 RNA 0.07 TCGA-85-8580-01 15 25221513 25221513 C T SNRPN Missense_Mutation p.R73C 0.13 deleterious(0) probably_damaging(0.982) TCGA-85-8580-01 15 25584401 25584401 T A UBE3A Missense_Mutation p.L837F 0.20 deleterious(0) probably_damaging(0.987) TCGA-85-8580-01 15 35044821 35044821 A G GJD2 Missense_Mutation p.L275P 0.13 deleterious(0) probably_damaging(0.995) TCGA-85-8580-01 15 43896326 43896326 C A STRC Nonsense_Mutation p.E1415* 0.19 TCGA-85-8580-01 15 44120368 44120368 C G WDR76 Missense_Mutation p.T89S 0.14 tolerated(0.41) benign(0.007) TCGA-85-8580-01 15 45398398 45398398 C A DUOX2 Missense_Mutation p.Q691H 0.15 deleterious(0.02) benign(0.017) TCGA-85-8580-01 15 52098616 52098616 A T TMOD2 Missense_Mutation p.M307L 0.20 tolerated(0.14) benign(0.003) TCGA-85-8580-01 15 55652562 55652562 C G CCPG1 Missense_Mutation p.G470A 0.13 tolerated(0.2) probably_damaging(0.979) TCGA-85-8580-01 15 63029097 63029097 G T TLN2 Missense_Mutation p.A1127S 0.07 tolerated(0.07) benign(0.209) TCGA-85-8580-01 16 20491966 20491966 T C ACSM2A Silent p.D451D 0.09 TCGA-85-8580-01 16 20554513 20554513 A G ACSM2B Silent p.D451D 0.08 TCGA-85-8580-01 16 2334782 2334782 G T ABCA3 Missense_Mutation p.P1234Q 0.10 tolerated(0.13) benign(0.222) TCGA-85-8580-01 16 24920225 24920225 G C SLC5A11 Silent p.S486S 0.13 TCGA-85-8580-01 16 33020830 33020830 G T IGHV3OR16-8 Missense_Mutation p.A80S 0.14 tolerated_low_confidence(0.05) possibly_damaging(0.684) TCGA-85-8580-01 16 3819310 3819310 G - CREBBP Frame_Shift_Del p.S976Pfs*22 0.13 TCGA-85-8580-01 16 48221280 48221280 C A ABCC11 Missense_Mutation p.C922F 0.16 deleterious(0.04) probably_damaging(0.979) TCGA-85-8580-01 16 67517202 67517202 G T AGRP Missense_Mutation p.P34T 0.09 tolerated(0.11) benign(0.062) TCGA-85-8580-01 16 81198322 81198322 G C PKD1L2 RNA 0.29 TCGA-85-8580-01 17 10307897 10307897 G T MYH8 Missense_Mutation p.A813E 0.22 deleterious(0) benign(0.119) TCGA-85-8580-01 17 10356131 10356131 T C MYH4 Missense_Mutation p.K1077R 0.12 tolerated(0.1) benign(0.047) TCGA-85-8580-01 17 10433195 10433195 A T MYH2 Missense_Mutation p.L965Q 0.13 deleterious(0) probably_damaging(0.935) TCGA-85-8580-01 17 20356375 20356375 C T LGALS9B Silent p.Q194Q 0.16 TCGA-85-8580-01 17 21319872 21319872 C G KCNJ12 Silent p.P406P 0.07 TCGA-85-8580-01 17 30689998 30689998 C T ZNF207 Missense_Mutation p.P222L 0.12 tolerated(0.21) benign(0.003) TCGA-85-8580-01 17 36977237 36977237 C A CWC25 Missense_Mutation p.K36N 0.20 deleterious(0) probably_damaging(0.994) TCGA-85-8580-01 17 37627368 37627368 C G CDK12 Missense_Mutation p.P428R 0.11 benign(0.145) TCGA-85-8580-01 17 39254312 39254312 C T KRTAP4-8 Missense_Mutation p.V9M 0.23 deleterious(0.01) unknown(0) TCGA-85-8580-01 17 40003663 40003663 G A KLHL10 Splice_Site p.X484_splice 0.14 TCGA-85-8580-01 17 41063358 41063358 G T G6PC Missense_Mutation p.S330I 0.19 deleterious(0) probably_damaging(0.955) TCGA-85-8580-01 17 44144093 44144093 T G KANSL1 Missense_Mutation p.Q553P 0.16 tolerated(0.14) benign(0.002) TCGA-85-8580-01 17 46023266 46023266 G T PNPO Nonsense_Mutation p.E153* 0.17 TCGA-85-8580-01 17 61987669 61987669 G C CSHL1 Missense_Mutation p.H108Q 0.06 tolerated(0.07) benign(0.037) TCGA-85-8580-01 17 7577534 7577534 C A TP53 Missense_Mutation p.R249S 0.23 deleterious(0) probably_damaging(0.994) TCGA-85-8580-01 17 78346471 78346471 G T RNF213 Missense_Mutation p.A4230S 0.18 possibly_damaging(0.878) TCGA-85-8580-01 17 8790923 8790923 T C PIK3R5 Missense_Mutation p.H565R 0.19 tolerated(0.37) benign(0.003) TCGA-85-8580-01 18 10696124 10696124 C A PIEZO2 Missense_Mutation p.V2267L 0.18 deleterious(0.02) benign(0.009) TCGA-85-8580-01 18 13826715 13826715 C T MC5R Silent p.I317I 0.22 TCGA-85-8580-01 18 28648058 28648058 C A DSC2 Nonsense_Mutation p.E877* 0.25 TCGA-85-8580-01 18 3879453 3879453 C T DLGAP1 Missense_Mutation p.D206N 0.22 deleterious(0.02) possibly_damaging(0.856) TCGA-85-8580-01 18 50918182 50918182 G T DCC Missense_Mutation p.K871N 0.21 deleterious(0) possibly_damaging(0.658) TCGA-85-8580-01 18 5394745 5394745 C A EPB41L3 Missense_Mutation p.M1067I 0.16 deleterious(0) possibly_damaging(0.714) TCGA-85-8580-01 18 60036236 60036236 C A TNFRSF11A Missense_Mutation p.F362L 0.31 tolerated(1) benign(0.001) TCGA-85-8580-01 18 6971945 6971945 G C LAMA1 Silent p.G2270G 0.23 TCGA-85-8580-01 19 10741972 10741972 G A SLC44A2 Missense_Mutation p.D118N 0.05 tolerated(0.16) benign(0.001) TCGA-85-8580-01 19 12883630 12883630 C A HOOK2 Missense_Mutation p.V118L 0.11 deleterious(0.01) benign(0.227) TCGA-85-8580-01 19 18273292 18273292 A T PIK3R2 Missense_Mutation p.Q362L 0.18 deleterious(0.04) benign(0.112) TCGA-85-8580-01 19 21350460 21350460 G C ZNF431 Missense_Mutation p.E104Q 0.19 deleterious(0.02) benign(0.011) TCGA-85-8580-01 19 36211271 36211271 A G KMT2B Missense_Mutation p.Q341R 0.22 unknown(0) TCGA-85-8580-01 19 36884331 36884331 T C ZFP82 Missense_Mutation p.N304S 0.16 deleterious(0) probably_damaging(0.999) TCGA-85-8580-01 19 37117468 37117468 G T ZNF382 Missense_Mutation p.M223I 0.09 tolerated(0.1) benign(0.001) TCGA-85-8580-01 19 40368815 40368815 T C FCGBP Missense_Mutation p.Q4178R 0.08 benign(0.227) TCGA-85-8580-01 19 43371835 43371835 G A PSG1 3'UTR 0.22 TCGA-85-8580-01 19 44589942 44589942 G C ZNF284 Missense_Mutation p.W104S 0.05 deleterious(0) possibly_damaging(0.71) TCGA-85-8580-01 19 47983173 47983173 A T KPTN Missense_Mutation p.L245Q 0.07 tolerated(0.88) benign(0.004) TCGA-85-8580-01 19 49107054 49107054 G C FAM83E Silent p.L291L 0.23 TCGA-85-8580-01 19 4960684 4960684 C A UHRF1 RNA 0.17 TCGA-85-8580-01 19 52941461 52941461 G T ZNF534 Missense_Mutation p.V263F 0.08 deleterious(0.03) possibly_damaging(0.893) TCGA-85-8580-01 19 53077404 53077404 G C ZNF701 Missense_Mutation p.A68P 0.08 deleterious(0.05) possibly_damaging(0.76) TCGA-85-8580-01 19 53669301 53669301 G A ZNF665 Missense_Mutation p.H148Y 0.17 tolerated(0.07) benign(0.006) TCGA-85-8580-01 19 56423835 56423835 G T NLRP13 Missense_Mutation p.Q450K 0.09 tolerated(0.23) benign(0.058) TCGA-85-8580-01 19 56423836 56423836 A T NLRP13 Silent p.T449T 0.09 TCGA-85-8580-01 19 57336018 57336018 C G PEG3 Silent p.L2L 0.14 TCGA-85-8580-01 19 6664819 6664819 G A TNFSF14 3'UTR 0.22 TCGA-85-8580-01 19 6836507 6836507 A G VAV1 Silent p.G614G 0.19 TCGA-85-8580-01 19 7593488 7593488 A T MCOLN1 Missense_Mutation p.N295Y 0.15 deleterious(0) probably_damaging(0.931) TCGA-85-8580-01 19 7812192 7812192 C A CD209 Missense_Mutation p.G36W 0.07 deleterious(0) probably_damaging(0.977) TCGA-85-8580-01 19 8616746 8616746 C - MYO1F Frame_Shift_Del p.A217Pfs*12 0.18 TCGA-85-8580-01 19 8642227 8642227 C G MYO1F 5'UTR 0.06 TCGA-85-8580-01 19 9049483 9049483 A C MUC16 Silent p.P10716P 0.12 TCGA-85-8580-01 19 9054270 9054270 C T MUC16 Missense_Mutation p.G10451D 0.28 benign(0.016) TCGA-85-8580-01 1 11728799 11728799 G A FBXO6 Silent p.V28V 0.07 TCGA-85-8580-01 1 120436633 120436633 T C ADAM30 Missense_Mutation p.E776G 0.08 tolerated_low_confidence(0.26) benign(0) TCGA-85-8580-01 1 12921224 12921224 C - PRAMEF2 Frame_Shift_Del p.L340* 0.23 TCGA-85-8580-01 1 151139863 151139863 A G SCNM1 Missense_Mutation p.Y124C 0.16 deleterious(0) probably_damaging(0.994) TCGA-85-8580-01 1 154144695 154144695 G A TPM3 Intron 0.15 TCGA-85-8580-01 1 155013974 155013974 T C DCST1 Silent p.D211D 0.19 TCGA-85-8580-01 1 155429685 155429685 G C ASH1L Silent p.S1663S 0.16 TCGA-85-8580-01 1 156713529 156713529 G A HDGF Missense_Mutation p.P227S 0.14 deleterious_low_confidence(0.04) benign(0.02) TCGA-85-8580-01 1 158063181 158063181 G T KIRREL Silent p.L508L 0.08 TCGA-85-8580-01 1 160390214 160390214 G C VANGL2 Missense_Mutation p.A272P 0.17 deleterious(0) probably_damaging(0.929) TCGA-85-8580-01 1 161166612 161166612 G A ADAMTS4 Missense_Mutation p.A231V 0.18 tolerated(0.61) benign(0.003) TCGA-85-8580-01 1 169951999 169951999 C A KIFAP3 Missense_Mutation p.G506W 0.21 deleterious(0) probably_damaging(0.985) TCGA-85-8580-01 1 175092702 175092702 C A TNN Silent p.V939V 0.29 TCGA-85-8580-01 1 175324643 175324643 C A TNR Missense_Mutation p.R1082L 0.19 tolerated(0.75) probably_damaging(0.946) TCGA-85-8580-01 1 193038651 193038651 A G TROVE2 Missense_Mutation p.Y156C 0.19 deleterious(0) probably_damaging(1) TCGA-85-8580-01 1 214170564 214170564 A G PROX1 Missense_Mutation p.K229R 0.13 tolerated(0.27) benign(0.334) TCGA-85-8580-01 1 2160443 2160443 C T SKI Nonsense_Mutation p.Q80* 0.26 TCGA-85-8580-01 1 216373222 216373222 A G USH2A Silent p.C1186C 0.12 TCGA-85-8580-01 1 226834983 226834983 A C ITPKB Missense_Mutation p.F711V 0.26 deleterious(0.01) benign(0.188) TCGA-85-8580-01 1 231488312 231488312 G T SPRTN Intron 0.11 TCGA-85-8580-01 1 233120098 233120098 C T PCNXL2 Missense_Mutation p.M2122I 0.29 deleterious_low_confidence(0.01) probably_damaging(0.985) TCGA-85-8580-01 1 237777576 237777576 T C RYR2 Silent p.T1716T 0.18 TCGA-85-8580-01 1 237837453 237837453 C A RYR2 Missense_Mutation p.A2883D 0.09 possibly_damaging(0.796) TCGA-85-8580-01 1 238045778 238045778 C G ZP4 Missense_Mutation p.V523L 0.21 tolerated(0.29) benign(0.007) TCGA-85-8580-01 1 248366528 248366528 C A OR2M3 Silent p.T53T 0.20 TCGA-85-8580-01 1 248367026 248367026 T A OR2M3 Silent p.A219A 0.18 TCGA-85-8580-01 1 32224943 32224943 G T BAI2 Intron 0.35 TCGA-85-8580-01 1 37356569 37356569 C A GRIK3 Missense_Mutation p.D82Y 0.33 deleterious(0) probably_damaging(1) TCGA-85-8580-01 1 37499693 37499693 C A GRIK3 Missense_Mutation p.R6L 0.20 tolerated_low_confidence(0.43) benign(0) TCGA-85-8580-01 1 43774775 43774775 A G TIE1 Silent p.L387L 0.34 TCGA-85-8580-01 1 94343038 94343038 A G DNTTIP2 Silent p.S151S 0.35 TCGA-85-8580-01 20 10030664 10030664 G T ANKEF1 Missense_Mutation p.V483F 0.22 tolerated(0.06) benign(0.001) TCGA-85-8580-01 20 1532475 1532475 G T SIRPD Missense_Mutation p.P95T 0.20 tolerated(0.06) possibly_damaging(0.542) TCGA-85-8580-01 20 1961462 1961462 G T PDYN Missense_Mutation p.P91H 0.22 deleterious(0.02) possibly_damaging(0.711) TCGA-85-8580-01 20 32217571 32217571 T A CBFA2T2 Missense_Mutation p.M369K 0.17 deleterious(0) possibly_damaging(0.565) TCGA-85-8580-01 20 32217572 32217572 G T CBFA2T2 Missense_Mutation p.M369I 0.17 tolerated(0.18) benign(0.03) TCGA-85-8580-01 20 34458925 34458925 C G PHF20 Missense_Mutation p.S324W 0.05 deleterious(0.02) possibly_damaging(0.592) TCGA-85-8580-01 20 44505844 44505844 G A ZSWIM3 Missense_Mutation p.R216H 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-85-8580-01 20 44756977 44756977 G T CD40 Missense_Mutation p.A219S 0.15 tolerated(0.76) benign(0.003) TCGA-85-8580-01 20 49551756 49551756 C G DPM1 Silent p.V232V 0.16 TCGA-85-8580-01 20 61595666 61595666 G A SLC17A9 Silent p.Q303Q 0.18 TCGA-85-8580-01 20 61870137 61870137 G A BIRC7 Intron 0.27 TCGA-85-8580-01 20 61957490 61957490 C A COL20A1 Missense_Mutation p.P1149T 0.16 tolerated(0.13) possibly_damaging(0.852) TCGA-85-8580-01 20 62045488 62045488 C T KCNQ2 Silent p.V528V 0.16 TCGA-85-8580-01 20 62070005 62070005 C T KCNQ2 Silent p.R332R 0.12 TCGA-85-8580-01 20 62120456 62120456 A G EEF1A2 Missense_Mutation p.V360A 0.20 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-85-8580-01 21 11047542 11047542 T C BAGE2 RNA 0.04 TCGA-85-8580-01 22 20103756 20103756 T G TRMT2A Missense_Mutation p.K135T 0.13 deleterious(0) probably_damaging(0.998) TCGA-85-8580-01 22 23524102 23524102 C T BCR Missense_Mutation p.R319W 0.15 deleterious_low_confidence(0.02) possibly_damaging(0.876) TCGA-85-8580-01 22 26776258 26776260 CTA ACTC SEZ6L Frame_Shift_Ins p.*1025L 0.11 TCGA-85-8580-01 22 42607670 42607670 C T TCF20 Silent p.P1214P 0.17 TCGA-85-8580-01 22 44579204 44579204 G T PARVG 5'UTR 0.12 TCGA-85-8580-01 2 108868904 108868904 A C SULT1C3 Silent p.R86R 0.18 TCGA-85-8580-01 2 113325622 113325622 G T POLR1B Nonsense_Mutation p.G609* 0.14 TCGA-85-8580-01 2 135625242 135625242 G A ACMSD Missense_Mutation p.G194R 0.20 deleterious(0) probably_damaging(1) TCGA-85-8580-01 2 136540404 136540404 G A UBXN4 Missense_Mutation p.D492N 0.18 deleterious(0) possibly_damaging(0.878) TCGA-85-8580-01 2 145154136 145154136 T C ZEB2 Silent p.Q970Q 0.12 TCGA-85-8580-01 2 168100154 168100154 T C XIRP2 Missense_Mutation p.M751T 0.13 possibly_damaging(0.549) TCGA-85-8580-01 2 175436409 175436409 C T WIPF1 Missense_Mutation p.R375Q 0.19 deleterious(0.03) probably_damaging(0.921) TCGA-85-8580-01 2 175612979 175612979 G A CHRNA1 Missense_Mutation p.A441V 0.18 tolerated(0.4) possibly_damaging(0.779) TCGA-85-8580-01 2 179434245 179434245 A G TTN Silent p.P25538P 0.21 TCGA-85-8580-01 2 179458816 179458816 A G TTN Missense_Mutation p.I19435T 0.21 TCGA-85-8580-01 2 179632873 179632873 A G TTN Missense_Mutation p.I3058T 0.10 TCGA-85-8580-01 2 179659851 179659851 T C TTN Missense_Mutation p.E348G 0.22 TCGA-85-8580-01 2 179659854 179659854 T C TTN Missense_Mutation p.Q347R 0.19 TCGA-85-8580-01 2 185801363 185801363 A T ZNF804A Nonsense_Mutation p.K414* 0.18 TCGA-85-8580-01 2 192194695 192194695 C G MYO1B Missense_Mutation p.R96G 0.15 deleterious(0.03) possibly_damaging(0.647) TCGA-85-8580-01 2 199011590 199011590 G T PLCL1 Silent p.L1064L 0.16 TCGA-85-8580-01 2 202025382 202025382 A G CFLAR Missense_Mutation p.M341V 0.22 tolerated(0.09) benign(0.06) TCGA-85-8580-01 2 211473095 211473095 G T CPS1 Missense_Mutation p.A741S 0.16 deleterious(0) possibly_damaging(0.762) TCGA-85-8580-01 2 216965364 216965364 G A TMEM169 3'UTR 0.33 TCGA-85-8580-01 2 226273604 226273604 C A NYAP2 Missense_Mutation p.S3Y 0.16 tolerated_low_confidence(1) benign(0.032) TCGA-85-8580-01 2 226273792 226273792 C T NYAP2 Nonsense_Mutation p.R66* 0.12 TCGA-85-8580-01 2 227958990 227958990 G T COL4A4 Missense_Mutation p.P407H 0.22 probably_damaging(0.988) TCGA-85-8580-01 2 232262872 232262872 G A B3GNT7 Missense_Mutation p.D148N 0.27 deleterious(0.01) probably_damaging(0.993) TCGA-85-8580-01 2 233274474 233274474 C A ALPPL2 Silent p.P497P 0.19 TCGA-85-8580-01 2 238820440 238820440 G T RAMP1 3'UTR 0.17 TCGA-85-8580-01 2 26705316 26705316 G A OTOF Missense_Mutation p.H513Y 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-85-8580-01 2 26997126 26997126 G T SLC35F6 Missense_Mutation p.D29Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-85-8580-01 2 27303034 27303034 C T EMILIN1 Silent p.Y62Y 0.14 TCGA-85-8580-01 2 27303099 27303099 C A EMILIN1 Missense_Mutation p.P84H 0.15 probably_damaging(0.989) TCGA-85-8580-01 2 27456538 27456538 G T CAD Silent p.V1087V 0.18 TCGA-85-8580-01 2 58313475 58313475 C A VRK2 Silent p.I86I 0.12 TCGA-85-8580-01 2 65231098 65231098 T G SLC1A4 Missense_Mutation p.D194E 0.27 tolerated(0.58) benign(0.004) TCGA-85-8580-01 2 74044035 74044035 A G C2orf78 Silent p.K895K 0.09 TCGA-85-8580-01 2 96071517 96071517 G T FAHD2A Nonsense_Mutation p.E71* 0.17 TCGA-85-8580-01 3 101085474 101085474 C T SENP7 Missense_Mutation p.S373N 0.13 tolerated(0.16) benign(0.258) TCGA-85-8580-01 3 107520009 107520009 A G BBX Silent p.K873K 0.41 TCGA-85-8580-01 3 107881334 107881334 C A IFT57 Missense_Mutation p.G427V 0.10 deleterious_low_confidence(0.01) benign(0.424) TCGA-85-8580-01 3 108818311 108818311 C A MORC1 Missense_Mutation p.G106V 0.21 deleterious(0) probably_damaging(1) TCGA-85-8580-01 3 113122794 113122794 G A WDR52 Nonsense_Mutation p.R359* 0.11 TCGA-85-8580-01 3 119434648 119434648 T C MAATS1 Intron 0.12 TCGA-85-8580-01 3 120134802 120134802 C A FSTL1 Nonsense_Mutation p.E46* 0.36 TCGA-85-8580-01 3 121304976 121304976 C A ARGFX Silent p.P159P 0.13 TCGA-85-8580-01 3 121411188 121411188 T A GOLGB1 Silent p.G2341G 0.11 TCGA-85-8580-01 3 124174107 124174107 G A KALRN Silent p.R1210R 0.12 TCGA-85-8580-01 3 13401784 13401784 C A NUP210 Missense_Mutation p.A714S 0.16 tolerated(0.51) benign(0.002) TCGA-85-8580-01 3 137843688 137843688 G T A4GNT Missense_Mutation p.H147Q 0.13 deleterious(0.01) probably_damaging(0.932) TCGA-85-8580-01 3 147108850 147108850 G A ZIC4 Missense_Mutation p.S341L 0.12 deleterious(0.01) probably_damaging(0.921) TCGA-85-8580-01 3 148885703 148885704 - C HPS3 Frame_Shift_Ins p.E942* 0.29 TCGA-85-8580-01 3 156876691 156876691 T G CCNL1 Missense_Mutation p.N151T 0.10 deleterious(0) possibly_damaging(0.76) TCGA-85-8580-01 3 164737394 164737394 G - SI Frame_Shift_Del p.P1140Lfs*44 0.11 TCGA-85-8580-01 3 182870175 182870175 G C LAMP3 Silent p.L292L 0.14 TCGA-85-8580-01 3 19554465 19554465 G A KCNH8 Missense_Mutation p.E695K 0.27 tolerated(0.16) benign(0.169) TCGA-85-8580-01 3 36872369 36872369 G T TRANK1 Missense_Mutation p.A2858D 0.14 tolerated(0.06) benign(0.012) TCGA-85-8580-01 4 106621065 106621065 G A INTS12 Missense_Mutation p.A33V 0.09 deleterious(0.04) benign(0.075) TCGA-85-8580-01 4 126411212 126411212 A G FAT4 Missense_Mutation p.D4412G 0.20 benign(0.002) TCGA-85-8580-01 4 153896507 153896507 G T FHDC1 Missense_Mutation p.Q688H 0.14 deleterious(0.01) benign(0.396) TCGA-85-8580-01 4 158091753 158091753 A T GLRB Missense_Mutation p.N456I 0.12 tolerated(0.2) possibly_damaging(0.678) TCGA-85-8580-01 4 159092457 159092457 C T FAM198B Missense_Mutation p.R24H 0.06 tolerated(0.13) benign(0.042) TCGA-85-8580-01 4 4458945 4458945 A C STX18 Missense_Mutation p.V157G 0.26 deleterious(0) probably_damaging(0.957) TCGA-85-8580-01 4 46263902 46263902 G C GABRA2 Intron 0.12 TCGA-85-8580-01 4 57314729 57314729 G A PAICS Nonsense_Mutation p.W187* 0.35 TCGA-85-8580-01 4 62598602 62598602 T C LPHN3 Silent p.T175T 0.25 TCGA-85-8580-01 4 69097076 69097076 G T TMPRSS11B Missense_Mutation p.N177K 0.27 tolerated(0.47) benign(0.186) TCGA-85-8580-01 4 7845004 7845004 T C AFAP1 Silent p.K136K 0.12 TCGA-85-8580-01 4 87028516 87028516 C A MAPK10 Intron 0.14 TCGA-85-8580-01 5 129241122 129241122 G T CHSY3 Silent p.P200P 0.23 TCGA-85-8580-01 5 13777440 13777440 C A DNAH5 Missense_Mutation p.M2992I 0.07 benign(0.072) TCGA-85-8580-01 5 137803339 137803339 T G EGR1 Missense_Mutation p.C401G 0.25 deleterious(0) unknown(0) TCGA-85-8580-01 5 13916478 13916478 C A DNAH5 Missense_Mutation p.K392N 0.15 possibly_damaging(0.803) TCGA-85-8580-01 5 140730960 140730960 T C PCDHGB1 Missense_Mutation p.V378A 0.32 deleterious(0) probably_damaging(0.999) TCGA-85-8580-01 5 14381300 14381300 C A TRIO Missense_Mutation p.S1170Y 0.04 probably_damaging(0.961) TCGA-85-8580-01 5 147715128 147715128 C T SPINK9 5'UTR 0.32 TCGA-85-8580-01 5 156899665 156899665 G C NIPAL4 Silent p.T366T 0.26 TCGA-85-8580-01 5 159821841 159821841 C G C5orf54 Silent p.V219V 0.21 TCGA-85-8580-01 5 176025159 176025159 T A GPRIN1 Silent p.A559A 0.23 TCGA-85-8580-01 5 178358454 178358454 G A ZFP2 Missense_Mutation p.G47E 0.26 tolerated(1) benign(0) TCGA-85-8580-01 5 179393923 179393923 C A RNF130 Missense_Mutation p.D345Y 0.30 deleterious(0) possibly_damaging(0.862) TCGA-85-8580-01 5 36051982 36051982 A T UGT3A2 Missense_Mutation p.L101I 0.15 tolerated(0.06) benign(0.345) TCGA-85-8580-01 5 40681877 40681877 G T PTGER4 Missense_Mutation p.R261L 0.27 tolerated(0.45) benign(0.261) TCGA-85-8580-01 5 7889289 7889289 G T MTRR Missense_Mutation p.A437S 0.23 tolerated(0.43) possibly_damaging(0.541) TCGA-85-8580-01 5 80550833 80550833 G A CKMT2 Missense_Mutation p.E157K 0.14 tolerated(0.22) possibly_damaging(0.697) TCGA-85-8580-01 6 117113919 117113919 G A GPRC6A Silent p.L723L 0.14 TCGA-85-8580-01 6 12121394 12121394 C T HIVEP1 Missense_Mutation p.H456Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-85-8580-01 6 133005598 133005598 C A VNN1 Missense_Mutation p.G412V 0.17 deleterious(0) probably_damaging(1) TCGA-85-8580-01 6 133072541 133072541 G A VNN2 Missense_Mutation p.P315S 0.17 tolerated(0.13) possibly_damaging(0.698) TCGA-85-8580-01 6 146264351 146264351 A G SHPRH Silent p.S722S 0.11 TCGA-85-8580-01 6 150212050 150212050 A T RAET1E 5'UTR 0.16 TCGA-85-8580-01 6 168949861 168949861 G A SMOC2 Silent p.Q216Q 0.16 TCGA-85-8580-01 6 21231360 21231360 G T CDKAL1 3'UTR 0.19 TCGA-85-8580-01 6 21231361 21231361 G T CDKAL1 3'UTR 0.19 TCGA-85-8580-01 6 33679475 33679475 C G UQCC2 5'UTR 0.22 TCGA-85-8580-01 6 34735690 34735690 G T SNRPC Missense_Mutation p.A56S 0.12 tolerated(0.07) possibly_damaging(0.474) TCGA-85-8580-01 6 41127580 41127580 G T TREM2 Silent p.P144P 0.07 TCGA-85-8580-01 6 46793021 46793021 A G MEP1A Missense_Mutation p.N190S 0.14 deleterious(0) probably_damaging(0.991) TCGA-85-8580-01 6 46802431 46802431 C A MEP1A Missense_Mutation p.L576M 0.14 tolerated(0.11) probably_damaging(0.957) TCGA-85-8580-01 6 4892501 4892501 C T CDYL Silent p.P193P 0.08 TCGA-85-8580-01 6 51618093 51618093 C T PKHD1 Silent p.L2952L 0.09 TCGA-85-8580-01 6 53156686 53156686 A C ELOVL5 Missense_Mutation p.I45S 0.22 tolerated(0.31) probably_damaging(0.913) TCGA-85-8580-01 6 54805572 54805572 G T FAM83B Missense_Mutation p.K601N 0.11 tolerated(0.73) benign(0.002) TCGA-85-8580-01 6 79770481 79770481 G A PHIP Silent p.L82L 0.16 TCGA-85-8580-01 7 100280059 100280059 C - GIGYF1 Frame_Shift_Del p.E883Rfs*7 0.29 TCGA-85-8580-01 7 100686050 100686050 A G MUC17 Missense_Mutation p.M3785V 0.35 benign(0) TCGA-85-8580-01 7 107689846 107689846 T C LAMB4 Silent p.L1349L 0.29 TCGA-85-8580-01 7 123508605 123508605 A G HYAL4 Missense_Mutation p.N93S 0.27 tolerated(0.11) possibly_damaging(0.865) TCGA-85-8580-01 7 134879748 134879748 C A WDR91 Missense_Mutation p.A445S 0.33 tolerated(0.21) benign(0.102) TCGA-85-8580-01 7 136849075 136849075 G T hsa-mir-490 Intron 0.35 TCGA-85-8580-01 7 149172121 149172121 C A ZNF746 Missense_Mutation p.R431L 0.88 tolerated(0.2) benign(0.045) TCGA-85-8580-01 7 2638218 2638218 C T IQCE Silent p.D520D 0.32 TCGA-85-8580-01 7 31015455 31015455 G T GHRHR Missense_Mutation p.G316C 0.22 tolerated(0.1) benign(0.098) TCGA-85-8580-01 7 31862739 31862739 C T PDE1C Nonsense_Mutation p.W570* 0.05 TCGA-85-8580-01 7 36901327 36901327 G A ELMO1 Silent p.L640L 0.18 TCGA-85-8580-01 7 37890256 37890256 T C NME8 Silent p.C39C 0.15 TCGA-85-8580-01 7 43532720 43532720 A T HECW1 Silent p.P1126P 0.21 TCGA-85-8580-01 7 44579315 44579315 C A NPC1L1 Missense_Mutation p.Q227H 0.25 tolerated(0.17) benign(0.005) TCGA-85-8580-01 7 48287842 48287842 A G ABCA13 Missense_Mutation p.I556V 0.18 benign(0.001) TCGA-85-8580-01 7 64452168 64452168 C - ERV3-1 Frame_Shift_Del p.A413Hfs*36 0.18 TCGA-85-8580-01 7 72754821 72754821 T A FKBP6 Missense_Mutation p.F257Y 0.52 tolerated(0.11) probably_damaging(0.999) TCGA-85-8580-01 7 73011627 73011627 G A MLXIPL Silent p.P496P 0.45 TCGA-85-8580-01 7 73117195 73117195 C A STX1A Missense_Mutation p.A220S 0.22 deleterious(0.02) probably_damaging(1) TCGA-85-8580-01 7 87041340 87041340 C G ABCB4 Silent p.V931V 0.39 TCGA-85-8580-01 7 88966097 88966097 C A ZNF804B Silent p.P1267P 0.07 TCGA-85-8580-01 7 913052 913052 A T SUN1 3'UTR 0.36 TCGA-85-8580-01 8 100654306 100654306 G T VPS13B Missense_Mutation p.A1855S 0.25 tolerated(0.73) probably_damaging(0.935) TCGA-85-8580-01 8 103237210 103237210 C A RRM2B Missense_Mutation p.A120S 0.13 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-85-8580-01 8 104955155 104955155 G C RIMS2 Splice_Site p.X901_splice 0.17 TCGA-85-8580-01 8 105521200 105521200 A G LRP12 Missense_Mutation p.I80T 0.21 deleterious(0) probably_damaging(0.998) TCGA-85-8580-01 8 113563044 113563044 C A CSMD3 Missense_Mutation p.G1474C 0.22 deleterious(0.03) probably_damaging(1) TCGA-85-8580-01 8 124982292 124982292 C A FER1L6 Missense_Mutation p.F134L 0.14 deleterious(0.02) benign(0.246) TCGA-85-8580-01 8 139732985 139732985 A G COL22A1 Silent p.L784L 0.16 TCGA-85-8580-01 8 139890373 139890373 C A COL22A1 Missense_Mutation p.G93V 0.25 unknown(0) TCGA-85-8580-01 8 144998577 144998577 G C PLEC Silent p.A1977A 0.13 TCGA-85-8580-01 8 146033099 146033099 C T ZNF517 Silent p.C266C 0.06 TCGA-85-8580-01 8 16884745 16884745 C T MICU3 5'Flank 0.16 TCGA-85-8580-01 8 23423812 23423812 C T SLC25A37 Silent p.D134D 0.15 TCGA-85-8580-01 8 27779672 27779672 C A SCARA5 Missense_Mutation p.R111L 0.47 deleterious(0.05) benign(0.113) TCGA-85-8580-01 8 41529894 41529894 C A ANK1 Missense_Mutation p.V1733L 0.18 tolerated_low_confidence(0.07) benign(0.049) TCGA-85-8580-01 8 74209522 74209522 C T RDH10 Missense_Mutation p.T128M 0.06 deleterious(0.02) benign(0.168) TCGA-85-8580-01 8 80679303 80679303 G T HEY1 Silent p.R64R 0.23 TCGA-85-8580-01 9 104499799 104499799 C T GRIN3A Missense_Mutation p.E155K 0.08 tolerated(0.15) probably_damaging(0.994) TCGA-85-8580-01 9 107456791 107456791 T C OR13D1 Missense_Mutation p.L30P 0.16 tolerated_low_confidence(0.16) benign(0.01) TCGA-85-8580-01 9 109690844 109690844 G A ZNF462 Missense_Mutation p.D1551N 0.13 probably_damaging(0.993) TCGA-85-8580-01 9 114134097 114134097 C A KIAA0368 Missense_Mutation p.G1692V 0.11 deleterious(0) probably_damaging(1) TCGA-85-8580-01 9 114134098 114134098 C A KIAA0368 Missense_Mutation p.G1692C 0.11 deleterious(0) probably_damaging(1) TCGA-85-8580-01 9 125582545 125582545 C - PDCL Frame_Shift_Del p.G242Vfs*3 0.20 TCGA-85-8580-01 9 127262680 127262680 C A NR5A1 Missense_Mutation p.A187S 0.23 tolerated(1) benign(0) TCGA-85-8580-01 9 138517912 138517912 T C GLT6D1 Intron 0.23 TCGA-85-8580-01 9 139746896 139746896 G A MAMDC4 Missense_Mutation p.A10T 0.09 tolerated(0.16) benign(0.005) TCGA-85-8580-01 9 35813268 35813268 C T HINT2 Missense_Mutation p.R132Q 0.03 deleterious(0.03) probably_damaging(0.998) TCGA-85-8580-01 9 73477883 73477883 G T TRPM3 Missense_Mutation p.P135T 0.10 deleterious(0) probably_damaging(0.998) TCGA-85-8580-01 9 84532488 84532488 C G SPATA31D5P RNA 0.16 TCGA-85-8580-01 9 91995970 91995970 C G SEMA4D Missense_Mutation p.D555H 0.14 deleterious(0.02) possibly_damaging(0.563) TCGA-85-8580-01 9 96715022 96715022 A T BARX1 Missense_Mutation p.W197R 0.12 deleterious(0) probably_damaging(0.924) TCGA-85-8580-01 X 100625017 100625017 T A BTK Silent p.L120L 0.24 TCGA-85-8580-01 X 101826471 101826471 C T NXF4 RNA 0.25 TCGA-85-8580-01 X 125686358 125686358 G T DCAF12L1 Nonsense_Mutation p.Y78* 0.32 TCGA-85-8580-01 X 1585430 1585430 C A P2RY8 Missense_Mutation p.G8C 0.09 deleterious(0.03) possibly_damaging(0.752) TCGA-85-8580-01 X 30322942 30322942 T A NR0B1 Splice_Site p.X390_splice 0.07 TCGA-85-8580-01 X 31165515 31165515 G A DMD Silent p.L3558L 0.10 TCGA-85-8580-01 X 49021309 49021309 C T MAGIX Missense_Mutation p.R130C 0.05 deleterious(0) possibly_damaging(0.529) TCGA-85-8580-01 X 64141858 64141858 G T ZC4H2 Missense_Mutation p.L22M 0.12 tolerated(0.11) possibly_damaging(0.629) TCGA-85-8580-01 X 64951707 64951707 G C MSN Missense_Mutation p.A187P 0.06 deleterious(0) probably_damaging(0.969) TCGA-85-8580-01 X 74289159 74289159 T C ABCB7 Missense_Mutation p.K500R 0.14 tolerated(0.06) benign(0.159) TCGA-85-8580-01 X 84526590 84526590 G T ZNF711 Missense_Mutation p.C681F 0.05 deleterious(0) probably_damaging(0.998) TCGA-85-8580-01 X 89177313 89177313 T C TGIF2LX Missense_Mutation p.Y77H 0.19 tolerated(0.09) probably_damaging(0.997) TCGA-85-8580-01 X 91873641 91873641 T C PCDH11X Missense_Mutation p.L1249S 0.05 deleterious_low_confidence(0.01) benign(0.118) TCGA-85-8582-01 10 102046438 102046438 G T BLOC1S2 5'UTR 0.19 TCGA-85-8582-01 10 108377948 108377948 C A SORCS1 Missense_Mutation p.G960V 0.25 deleterious(0) probably_damaging(0.929) TCGA-85-8582-01 10 116735030 116735030 G T TRUB1 Missense_Mutation p.E314D 0.23 tolerated(0.07) benign(0.155) TCGA-85-8582-01 10 118354372 118354372 T A PNLIPRP1 Missense_Mutation p.L154H 0.11 deleterious(0) probably_damaging(1) TCGA-85-8582-01 10 37440990 37440990 C A ANKRD30A Missense_Mutation p.P494T 0.16 tolerated(0.56) benign(0.066) TCGA-85-8582-01 10 46264939 46264939 G C FAM21C Missense_Mutation p.D638H 0.13 deleterious(0) probably_damaging(0.935) TCGA-85-8582-01 10 49379194 49379194 A T FRMPD2 Missense_Mutation p.V1094E 0.31 deleterious(0) possibly_damaging(0.669) TCGA-85-8582-01 10 51877736 51877736 G T FAM21A Missense_Mutation p.G738V 0.27 deleterious(0.04) probably_damaging(0.929) TCGA-85-8582-01 10 64974581 64974581 C T JMJD1C Missense_Mutation p.R449Q 0.11 tolerated_low_confidence(0.32) benign(0) TCGA-85-8582-01 10 89720825 89720825 G C PTEN Missense_Mutation p.D326H 0.18 deleterious(0) probably_damaging(0.997) TCGA-85-8582-01 11 104971256 104971256 C A CARD17 Silent p.T86T 0.11 TCGA-85-8582-01 11 118769256 118769256 C A BCL9L Missense_Mutation p.Q1456H 0.09 probably_damaging(0.995) TCGA-85-8582-01 11 119031826 119031826 C A ABCG4 3'UTR 0.10 TCGA-85-8582-01 11 122929531 122929531 T A HSPA8 Missense_Mutation p.E444V 0.10 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-85-8582-01 11 129739751 129739751 C A NFRKB Missense_Mutation p.A1082S 0.11 deleterious_low_confidence(0.05) probably_damaging(0.994) TCGA-85-8582-01 11 22398954 22398954 C A SLC17A6 Missense_Mutation p.R473S 0.14 tolerated(0.06) benign(0.242) TCGA-85-8582-01 11 2593291 2593291 G T KCNQ1 Missense_Mutation p.Q244H 0.11 deleterious(0) probably_damaging(0.987) TCGA-85-8582-01 11 26692549 26692550 - A SLC5A12 3'UTR 0.15 TCGA-85-8582-01 11 26743194 26743194 C A SLC5A12 Missense_Mutation p.G23V 0.12 tolerated(0.21) probably_damaging(0.952) TCGA-85-8582-01 11 30032563 30032563 G T KCNA4 Missense_Mutation p.P555T 0.10 deleterious(0) probably_damaging(0.999) TCGA-85-8582-01 11 4389297 4389297 T C OR52B4 Missense_Mutation p.T77A 0.15 deleterious(0) benign(0.049) TCGA-85-8582-01 11 44099012 44099012 G A ACCS Intron 0.23 TCGA-85-8582-01 11 49207247 49207247 G A FOLH1 Missense_Mutation p.P267L 0.10 deleterious(0.01) possibly_damaging(0.556) TCGA-85-8582-01 11 51411732 51411732 G C OR4A5 Missense_Mutation p.L222V 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.764) TCGA-85-8582-01 11 55587355 55587355 G T OR5D18 Missense_Mutation p.V84L 0.11 tolerated(0.05) benign(0.008) TCGA-85-8582-01 11 55587356 55587356 T A OR5D18 Missense_Mutation p.V84E 0.11 tolerated(1) benign(0.003) TCGA-85-8582-01 11 55606796 55606796 C A OR5D16 Missense_Mutation p.S190Y 0.15 deleterious(0) probably_damaging(0.996) TCGA-85-8582-01 11 55703557 55703557 C G OR5I1 Missense_Mutation p.C107S 0.13 tolerated(0.13) probably_damaging(0.991) TCGA-85-8582-01 11 55890659 55890659 G A OR8H3 Missense_Mutation p.D271N 0.11 deleterious(0.01) possibly_damaging(0.529) TCGA-85-8582-01 11 55927628 55927628 G T OR8K5 Missense_Mutation p.H56N 0.20 deleterious_low_confidence(0.02) benign(0.223) TCGA-85-8582-01 11 58190480 58190480 T C OR5B2 Silent p.R85R 0.37 TCGA-85-8582-01 11 59224683 59224683 G T OR4D6 Missense_Mutation p.D84Y 0.10 deleterious(0) possibly_damaging(0.759) TCGA-85-8582-01 11 61026741 61026741 G A VWCE Silent p.H758H 0.10 TCGA-85-8582-01 11 6265328 6265328 C A CNGA4 Missense_Mutation p.L473M 0.08 tolerated(1) possibly_damaging(0.866) TCGA-85-8582-01 11 6817007 6817007 A C OR6A2 5'UTR 0.19 TCGA-85-8582-01 11 6964366 6964366 G T ZNF215 Missense_Mutation p.G179V 0.13 tolerated(0.12) probably_damaging(0.974) TCGA-85-8582-01 11 74799989 74799989 T A OR2AT4 Missense_Mutation p.Y257F 0.09 tolerated(0.15) benign(0.4) TCGA-85-8582-01 11 74880271 74880271 C A SLCO2B1 Missense_Mutation p.P168T 0.11 tolerated(0.14) benign(0.345) TCGA-85-8582-01 11 74880272 74880272 C A SLCO2B1 Missense_Mutation p.P168Q 0.11 tolerated(0.13) possibly_damaging(0.548) TCGA-85-8582-01 11 77919959 77919959 C G USP35 Missense_Mutation p.S514R 0.06 deleterious(0) unknown(0) TCGA-85-8582-01 11 85436551 85436551 T A SYTL2 Nonsense_Mutation p.K317* 0.08 TCGA-85-8582-01 12 100813698 100813698 G C SLC17A8 Missense_Mutation p.D511H 0.20 deleterious(0) probably_damaging(0.91) TCGA-85-8582-01 12 101552048 101552048 G T SLC5A8 Silent p.S563S 0.12 TCGA-85-8582-01 12 101552049 101552049 G T SLC5A8 Missense_Mutation p.S563Y 0.12 tolerated(1) benign(0.04) TCGA-85-8582-01 12 101603362 101603362 C G SLC5A8 Missense_Mutation p.A89P 0.24 tolerated(0.05) possibly_damaging(0.528) TCGA-85-8582-01 12 108169015 108169015 C T ASCL4 Missense_Mutation p.A8V 0.20 tolerated(0.09) benign(0.141) TCGA-85-8582-01 12 113664763 113664763 A T TPCN1 Missense_Mutation p.S108C 0.37 tolerated(0.07) possibly_damaging(0.609) TCGA-85-8582-01 12 121229360 121229360 C - SPPL3 Frame_Shift_Del p.R34Sfs*52 0.16 TCGA-85-8582-01 12 125397102 125397102 C T UBC Missense_Mutation p.V406I 0.21 tolerated(0.14) possibly_damaging(0.838) TCGA-85-8582-01 12 125591691 125591691 C A AACS Silent p.A264A 0.17 TCGA-85-8582-01 12 130929766 130929766 G T RIMBP2 Silent p.P193P 0.24 TCGA-85-8582-01 12 132210079 132210079 G T SFSWAP Missense_Mutation p.D246Y 0.18 deleterious(0) probably_damaging(0.998) TCGA-85-8582-01 12 21205114 21205114 C A SLCO1B7 Silent p.P425P 0.25 TCGA-85-8582-01 12 3788113 3788113 C A EFCAB4B Missense_Mutation p.M164I 0.23 deleterious(0.05) benign(0.416) TCGA-85-8582-01 12 39064590 39064590 C A CPNE8 Missense_Mutation p.D483Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-85-8582-01 12 50794650 50794650 G T LARP4 5'Flank 0.16 TCGA-85-8582-01 12 9265031 9265031 G C A2M Missense_Mutation p.N124K 0.22 tolerated(0.23) benign(0.01) TCGA-85-8582-01 13 103524601 103524601 A G BIVM-ERCC5 Missense_Mutation p.D1337G 0.18 deleterious(0.05) probably_damaging(0.981) TCGA-85-8582-01 13 22069453 22069453 C A MICU2 Missense_Mutation p.E349D 0.20 deleterious(0.02) probably_damaging(0.983) TCGA-85-8582-01 13 38213400 38213401 - T TRPC4 Frame_Shift_Ins p.Y711Ifs*18 0.10 TCGA-85-8582-01 13 41373412 41373412 T A SLC25A15 Missense_Mutation p.V92E 0.10 deleterious(0) probably_damaging(0.978) TCGA-85-8582-01 13 46946403 46946403 C T KIAA0226L Missense_Mutation p.V70M 0.10 tolerated(0.22) benign(0.104) TCGA-85-8582-01 13 51935498 51935498 C A SERPINE3 Missense_Mutation p.T362K 0.16 deleterious(0) probably_damaging(0.978) TCGA-85-8582-01 13 58207441 58207441 A T PCDH17 Missense_Mutation p.E254V 0.12 deleterious(0.01) probably_damaging(1) TCGA-85-8582-01 13 70514181 70514181 G A KLHL1 Silent p.S335S 0.13 TCGA-85-8582-01 13 73649902 73649902 G A KLF5 Missense_Mutation p.D418N 0.19 deleterious(0) probably_damaging(0.971) TCGA-85-8582-01 13 77755914 77755914 T C MYCBP2 Silent p.K1583K 0.14 TCGA-85-8582-01 14 104174891 104174891 G T XRCC3 Missense_Mutation p.S54Y 0.08 deleterious(0) possibly_damaging(0.896) TCGA-85-8582-01 14 106173705 106173705 C A IGHA1 Missense_Mutation p.G288C 0.12 deleterious(0.01) probably_damaging(0.964) TCGA-85-8582-01 14 20295847 20295847 G T OR4N2 Silent p.R80R 0.20 TCGA-85-8582-01 14 42356520 42356520 C G LRFN5 Missense_Mutation p.S231C 0.08 deleterious(0.01) possibly_damaging(0.873) TCGA-85-8582-01 14 52534874 52534874 G C NID2 Missense_Mutation p.T79S 0.16 deleterious(0.01) possibly_damaging(0.76) TCGA-85-8582-01 14 53513665 53513665 C A DDHD1 Nonsense_Mutation p.E842* 0.12 TCGA-85-8582-01 14 57268722 57268722 A T OTX2 Missense_Mutation p.C209S 0.12 deleterious(0.01) probably_damaging(0.953) TCGA-85-8582-01 14 81651946 81651946 C A GTF2A1 Missense_Mutation p.D318Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-85-8582-01 14 90437544 90437544 G C TDP1 Missense_Mutation p.G229R 0.07 deleterious(0) probably_damaging(1) TCGA-85-8582-01 14 95234756 95234756 A T GSC 3'UTR 0.10 TCGA-85-8582-01 14 95657784 95657784 A C CLMN 3'UTR 0.17 TCGA-85-8582-01 15 22382586 22382586 C T OR4N4 Silent p.I38I 0.16 TCGA-85-8582-01 15 28482171 28482171 C A HERC2 Missense_Mutation p.G1314V 0.17 probably_damaging(0.963) TCGA-85-8582-01 15 29346854 29346854 C T APBA2 Missense_Mutation p.P256L 0.20 tolerated_low_confidence(0.47) benign(0.001) TCGA-85-8582-01 15 29397594 29397594 G T APBA2 Missense_Mutation p.A513S 0.12 deleterious(0.02) probably_damaging(0.949) TCGA-85-8582-01 15 31294183 31294183 T - TRPM1 Frame_Shift_Del p.S1591Vfs*9 0.19 TCGA-85-8582-01 15 34542881 34542881 C T SLC12A6 Silent p.K514K 0.17 TCGA-85-8582-01 15 41275245 41275245 C T INO80 Missense_Mutation p.G1423E 0.21 tolerated(0.12) benign(0.149) TCGA-85-8582-01 15 41770775 41770775 G A RTF1 Silent p.Q590Q 0.21 TCGA-85-8582-01 15 43895528 43895528 G C STRC Nonsense_Mutation p.S1486* 0.11 TCGA-85-8582-01 15 44084524 44084524 C A SERF2 5'Flank 0.20 TCGA-85-8582-01 15 54847627 54847627 C A UNC13C Intron 0.13 TCGA-85-8582-01 15 63054018 63054018 G T TLN2 Nonsense_Mutation p.E1593* 0.17 TCGA-85-8582-01 15 65918266 65918266 G T SLC24A1 Missense_Mutation p.R616S 0.06 possibly_damaging(0.587) TCGA-85-8582-01 15 68118635 68118635 C T SKOR1 Nonsense_Mutation p.R343* 0.06 TCGA-85-8582-01 16 10524694 10524694 G C ATF7IP2 Missense_Mutation p.G73R 0.16 tolerated(0.31) benign(0.367) TCGA-85-8582-01 16 14342859 14342859 C T MKL2 Missense_Mutation p.S725L 0.13 tolerated(0.09) benign(0.197) TCGA-85-8582-01 16 1797178 1797178 A G MAPK8IP3 Missense_Mutation p.Y298C 0.10 tolerated(0.16) benign(0) TCGA-85-8582-01 16 2578539 2578539 G C AMDHD2 Missense_Mutation p.G317R 0.16 deleterious(0.02) possibly_damaging(0.681) TCGA-85-8582-01 16 26146972 26146972 G T HS3ST4 Missense_Mutation p.M258I 0.26 tolerated(0.19) possibly_damaging(0.452) TCGA-85-8582-01 16 27475723 27475723 C T GTF3C1 Silent p.E1930E 0.11 TCGA-85-8582-01 16 30976201 30976201 A C SETD1A Missense_Mutation p.T380P 0.20 benign(0.005) TCGA-85-8582-01 16 57794749 57794749 G A KIFC3 Silent p.V707V 0.12 TCGA-85-8582-01 16 65025742 65025742 C A CDH11 Missense_Mutation p.G247V 0.30 deleterious(0) probably_damaging(0.926) TCGA-85-8582-01 16 74670399 74670399 C A RFWD3 Missense_Mutation p.C424F 0.26 tolerated(0.11) benign(0.125) TCGA-85-8582-01 16 81232314 81232314 C T PKD1L2 Missense_Mutation p.S27N 0.17 tolerated(0.16) benign(0.178) TCGA-85-8582-01 17 10248534 10248534 G C MYH13 Missense_Mutation p.I523M 0.14 deleterious(0) probably_damaging(0.999) TCGA-85-8582-01 17 10440818 10440818 G T MYH2 Missense_Mutation p.F543L 0.16 deleterious(0.03) benign(0.092) TCGA-85-8582-01 17 20805547 20805547 A C RP11-344E13.3 RNA 0.15 TCGA-85-8582-01 17 38172768 38172768 C G CSF3 Missense_Mutation p.L115V 0.12 deleterious(0) probably_damaging(0.999) TCGA-85-8582-01 17 43585894 43585894 C G LRRC37A4P RNA 0.11 TCGA-85-8582-01 17 43923577 43923577 C A SPPL2C Silent p.T435T 0.07 TCGA-85-8582-01 17 44101492 44101492 G A MAPT Silent p.T762T 0.09 TCGA-85-8582-01 17 46691857 46691857 C A HOXB8 Missense_Mutation p.Q70H 0.12 deleterious(0.01) possibly_damaging(0.73) TCGA-85-8582-01 17 47482545 47482545 C A PHB Missense_Mutation p.A210S 0.10 tolerated(0.13) possibly_damaging(0.559) TCGA-85-8582-01 17 49710885 49710885 G T CA10 Missense_Mutation p.Q306K 0.08 tolerated(0.43) benign(0.15) TCGA-85-8582-01 17 5048100 5048100 A T USP6 Missense_Mutation p.K645M 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-85-8582-01 17 61987246 61987246 A T CSHL1 Missense_Mutation p.L165Q 0.11 tolerated(0.32) benign(0) TCGA-85-8582-01 17 62038579 62038579 C G SCN4A Missense_Mutation p.D607H 0.09 deleterious(0.03) possibly_damaging(0.643) TCGA-85-8582-01 17 67039680 67039680 T C ABCA9 Silent p.Q250Q 0.11 TCGA-85-8582-01 17 67304432 67304432 C G ABCA5 Missense_Mutation p.A183P 0.17 deleterious(0) probably_damaging(0.948) TCGA-85-8582-01 17 72368664 72368664 G - GPR142 Frame_Shift_Del p.A439Hfs*12 0.11 TCGA-85-8582-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.20 deleterious(0) probably_damaging(0.997) TCGA-85-8582-01 17 80048819 80048819 C T FASN Missense_Mutation p.S540N 0.13 tolerated(0.78) benign(0.001) TCGA-85-8582-01 18 12325622 12325622 C G TUBB6 Missense_Mutation p.S278R 0.07 deleterious_low_confidence(0) possibly_damaging(0.558) TCGA-85-8582-01 18 19154832 19154832 T A ESCO1 5'UTR 0.31 TCGA-85-8582-01 18 56939649 56939649 C A RAX Missense_Mutation p.V163L 0.21 deleterious(0) probably_damaging(0.994) TCGA-85-8582-01 18 580682 580682 G T CETN1 Missense_Mutation p.V92L 0.11 tolerated(0.5) benign(0.006) TCGA-85-8582-01 18 67812961 67812961 C T RTTN Missense_Mutation p.D790N 0.21 tolerated(1) benign(0.001) TCGA-85-8582-01 18 690606 690606 G T ENOSF1 Nonsense_Mutation p.Y208* 0.10 TCGA-85-8582-01 19 10465234 10465234 G A TYK2 Missense_Mutation p.T890M 0.13 deleterious(0) probably_damaging(0.963) TCGA-85-8582-01 19 15989673 15989673 C A CYP4F2 Missense_Mutation p.V491F 0.10 tolerated(0.15) benign(0.076) TCGA-85-8582-01 19 19790233 19790233 A G ZNF101 Silent p.Q145Q 0.06 TCGA-85-8582-01 19 22154656 22154656 T A ZNF208 Missense_Mutation p.E1060D 0.11 tolerated(0.45) probably_damaging(0.946) TCGA-85-8582-01 19 22939814 22939814 A - ZNF99 3'Flank 0.10 TCGA-85-8582-01 19 36302884 36302884 C A PRODH2 Nonsense_Mutation p.E269* 0.13 TCGA-85-8582-01 19 36361842 36361842 G T APLP1 Missense_Mutation p.Q112H 0.40 deleterious(0) benign(0.28) TCGA-85-8582-01 19 36831486 36831486 G C ZFP14 Missense_Mutation p.H414Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-85-8582-01 19 37117925 37117925 G T ZNF382 Missense_Mutation p.G376W 0.12 deleterious(0) probably_damaging(1) TCGA-85-8582-01 19 38951204 38951204 C A RYR1 Missense_Mutation p.F850L 0.07 possibly_damaging(0.888) TCGA-85-8582-01 19 41239149 41239149 C T ITPKC Silent p.D518D 0.13 TCGA-85-8582-01 19 44535981 44535982 CA T ZNF222 Frame_Shift_Del p.Q92* 0.11 TCGA-85-8582-01 19 44536032 44536032 T G ZNF222 Missense_Mutation p.C109G 0.10 deleterious(0) benign(0.205) TCGA-85-8582-01 19 45377178 45377178 C T PVRL2 Missense_Mutation p.P261S 0.08 deleterious(0.02) probably_damaging(0.991) TCGA-85-8582-01 19 48343260 48343260 G A CRX 3'UTR 0.12 TCGA-85-8582-01 19 48511963 48511963 C A ELSPBP1 Silent p.T13T 0.22 TCGA-85-8582-01 19 49573751 49573751 G A KCNA7 Missense_Mutation p.L314F 0.07 deleterious(0) probably_damaging(0.912) TCGA-85-8582-01 19 50304824 50304824 G T AP2A1 Missense_Mutation p.Q577H 0.17 deleterious(0) probably_damaging(0.999) TCGA-85-8582-01 19 51768826 51768826 C A SIGLECL1 Missense_Mutation p.P76Q 0.15 deleterious(0) probably_damaging(1) TCGA-85-8582-01 19 51850245 51850245 C T ETFB Missense_Mutation p.G260D 0.13 deleterious_low_confidence(0) probably_damaging(1) TCGA-85-8582-01 19 52249810 52249810 G T FPR1 Silent p.I146I 0.20 TCGA-85-8582-01 19 53667746 53667746 T A ZNF665 Missense_Mutation p.N666I 0.29 tolerated(0.21) benign(0.187) TCGA-85-8582-01 19 54724616 54724616 G T LILRB3 Nonsense_Mutation p.S347* 0.06 TCGA-85-8582-01 19 55377330 55377330 C A KIR3DL2 Missense_Mutation p.F357L 0.18 tolerated(0.15) benign(0.008) TCGA-85-8582-01 19 56413571 56413571 C A NLRP13 Missense_Mutation p.E873D 0.09 tolerated(0.32) benign(0.396) TCGA-85-8582-01 19 56701288 56701288 G A ZSCAN5B Missense_Mutation p.P466S 0.16 deleterious(0.01) possibly_damaging(0.836) TCGA-85-8582-01 19 57666741 57666741 C A DUXA Splice_Site p.X147_splice 0.37 TCGA-85-8582-01 19 57932395 57932395 C T ZNF17 Missense_Mutation p.T512I 0.21 tolerated(0.27) benign(0.036) TCGA-85-8582-01 19 58439236 58439236 G T ZNF418 Missense_Mutation p.H105N 0.16 tolerated(0.33) possibly_damaging(0.775) TCGA-85-8582-01 19 5917844 5917844 C T RANBP3 Missense_Mutation p.D541N 0.11 deleterious(0.05) probably_damaging(0.97) TCGA-85-8582-01 19 6732355 6732355 C T GPR108 Silent p.L348L 0.06 TCGA-85-8582-01 19 9003578 9003578 G T MUC16 Silent p.V13354V 0.07 TCGA-85-8582-01 19 9049138 9049138 G T MUC16 Silent p.T10831T 0.11 TCGA-85-8582-01 19 9452427 9452427 G T ZNF559 Missense_Mutation p.L100F 0.09 tolerated(1) benign(0.134) TCGA-85-8582-01 1 100546135 100546135 T C HIAT1 Missense_Mutation p.F396L 0.10 deleterious(0.02) possibly_damaging(0.899) TCGA-85-8582-01 1 111216866 111216866 A C KCNA3 Missense_Mutation p.L189R 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-85-8582-01 1 115142876 115142876 C A DENND2C Missense_Mutation p.C685F 0.10 tolerated(1) benign(0.074) TCGA-85-8582-01 1 115282480 115282480 T C CSDE1 Missense_Mutation p.N57S 0.10 tolerated(0.13) benign(0.046) TCGA-85-8582-01 1 116670111 116670111 G T MAB21L3 Missense_Mutation p.R169L 0.14 tolerated(0.69) benign(0.015) TCGA-85-8582-01 1 117616327 117616327 G A TTF2 Nonsense_Mutation p.W88* 0.10 TCGA-85-8582-01 1 1334503 1334503 T C CCNL2 Missense_Mutation p.T62A 0.23 deleterious(0.01) possibly_damaging(0.785) TCGA-85-8582-01 1 158151477 158151477 C G CD1D Missense_Mutation p.D98E 0.06 tolerated(1) benign(0.03) TCGA-85-8582-01 1 158636220 158636220 C T SPTA1 Nonsense_Mutation p.W702* 0.11 TCGA-85-8582-01 1 160389144 160389144 G C VANGL2 Missense_Mutation p.R182P 0.09 deleterious(0) probably_damaging(0.999) TCGA-85-8582-01 1 160492944 160492944 G A SLAMF6 Silent p.C13C 0.15 TCGA-85-8582-01 1 167095754 167095754 C T DUSP27 Silent p.H462H 0.11 TCGA-85-8582-01 1 168510333 168510333 C T XCL2 Missense_Mutation p.V68I 0.22 tolerated(1) benign(0.017) TCGA-85-8582-01 1 171607743 171607743 C A MYOC Missense_Mutation p.D242Y 0.08 deleterious(0.01) benign(0.089) TCGA-85-8582-01 1 17413093 17413093 C G PADI2 Missense_Mutation p.E253Q 0.13 deleterious(0) probably_damaging(1) TCGA-85-8582-01 1 174781070 174781070 G T RABGAP1L Missense_Mutation p.R771I 0.05 deleterious(0.03) benign(0.064) TCGA-85-8582-01 1 175049403 175049403 C G TNN Missense_Mutation p.P297A 0.21 deleterious(0.03) probably_damaging(0.96) TCGA-85-8582-01 1 185067419 185067419 A G RNF2 Missense_Mutation p.E227G 0.23 tolerated(0.07) probably_damaging(0.999) TCGA-85-8582-01 1 190067571 190067571 G T BRINP3 Missense_Mutation p.H626Q 0.09 deleterious(0) probably_damaging(0.991) TCGA-85-8582-01 1 196397242 196397242 C A KCNT2 Missense_Mutation p.R326M 0.22 deleterious(0.03) possibly_damaging(0.907) TCGA-85-8582-01 1 198248118 198248119 - G NEK7 Frame_Shift_Ins p.V174Gfs*37 0.15 TCGA-85-8582-01 1 200550364 200550364 G C KIF14 Missense_Mutation p.I1100M 0.06 deleterious(0) probably_damaging(0.999) TCGA-85-8582-01 1 200587680 200587680 C A KIF14 Missense_Mutation p.G58C 0.05 tolerated(0.07) benign(0.005) TCGA-85-8582-01 1 207870958 207870958 A G CR1L Missense_Mutation p.R325G 0.08 tolerated(0.35) benign(0.065) TCGA-85-8582-01 1 212792845 212792845 A T ATF3 Missense_Mutation p.D165V 0.15 deleterious(0) probably_damaging(0.998) TCGA-85-8582-01 1 216251528 216251528 C A USH2A Missense_Mutation p.E1825D 0.17 benign(0.03) TCGA-85-8582-01 1 220091925 220091925 C A SLC30A10 Intron 0.11 TCGA-85-8582-01 1 221054662 221054662 T A HLX Nonsense_Mutation p.L240* 0.13 TCGA-85-8582-01 1 229666008 229666008 G T ABCB10 Missense_Mutation p.P528Q 0.17 deleterious(0.01) benign(0.434) TCGA-85-8582-01 1 236925800 236925800 C A ACTN2 Missense_Mutation p.P856T 0.06 deleterious(0) benign(0.126) TCGA-85-8582-01 1 237758951 237758951 C A RYR2 Nonsense_Mutation p.Y1530* 0.09 TCGA-85-8582-01 1 237777438 237777438 C A RYR2 Missense_Mutation p.H1670Q 0.19 benign(0.018) TCGA-85-8582-01 1 24390618 24390618 G T MYOM3 Missense_Mutation p.A1189E 0.17 deleterious(0) probably_damaging(0.997) TCGA-85-8582-01 1 24484208 24484208 G A IFNLR1 Silent p.D325D 0.12 TCGA-85-8582-01 1 247014365 247014365 T C AHCTF1 Missense_Mutation p.D1657G 0.15 deleterious(0.02) possibly_damaging(0.713) TCGA-85-8582-01 1 247263688 247263688 C A ZNF669 Silent p.V461V 0.13 TCGA-85-8582-01 1 247875368 247875368 A T OR6F1 Silent p.S230S 0.11 TCGA-85-8582-01 1 247875483 247875483 G T OR6F1 Missense_Mutation p.T192K 0.06 deleterious(0.02) probably_damaging(0.938) TCGA-85-8582-01 1 248202113 248202113 G T OR2L2 Missense_Mutation p.A182S 0.08 tolerated(0.17) benign(0.189) TCGA-85-8582-01 1 248487540 248487540 C A OR2M7 Nonsense_Mutation p.E111* 0.09 TCGA-85-8582-01 1 248525441 248525441 G C OR2T4 Missense_Mutation p.D187H 0.07 deleterious(0) probably_damaging(0.995) TCGA-85-8582-01 1 248569455 248569455 G T OR2T1 Nonsense_Mutation p.E54* 0.05 TCGA-85-8582-01 1 248616387 248616387 G T OR2T2 Missense_Mutation p.G97C 0.10 deleterious(0) probably_damaging(0.91) TCGA-85-8582-01 1 248685033 248685033 C - OR2G6 Frame_Shift_Del p.I30Sfs*8 0.14 TCGA-85-8582-01 1 26189776 26189776 G A PAQR7 Silent p.S185S 0.09 TCGA-85-8582-01 1 35370348 35370348 C T DLGAP3 Missense_Mutation p.G213S 0.15 tolerated(0.64) benign(0.017) TCGA-85-8582-01 1 46876100 46876100 G T FAAH Silent p.G402G 0.09 TCGA-85-8582-01 1 50642827 50642827 C A ELAVL4 Missense_Mutation p.T123N 0.10 deleterious(0) benign(0.194) TCGA-85-8582-01 1 66067092 66067092 C T LEPR Missense_Mutation p.P338S 0.12 tolerated(0.09) possibly_damaging(0.838) TCGA-85-8582-01 1 67147760 67147760 C A SGIP1 Missense_Mutation p.D341E 0.07 tolerated_low_confidence(1) benign(0.001) TCGA-85-8582-01 1 67390375 67390375 G A WDR78 Missense_Mutation p.A47V 0.13 tolerated_low_confidence(0.43) benign(0.001) TCGA-85-8582-01 1 75036943 75036943 C A C1orf173 Missense_Mutation p.R1484M 0.11 deleterious(0.01) benign(0.264) TCGA-85-8582-01 1 77094480 77094480 A T ST6GALNAC3 Missense_Mutation p.T303S 0.10 benign(0.239) TCGA-85-8582-01 1 84988095 84988095 C G SPATA1 RNA 0.25 TCGA-85-8582-01 1 90179100 90179100 T G LRRC8C Missense_Mutation p.L324R 0.10 deleterious(0) possibly_damaging(0.832) TCGA-85-8582-01 20 17640838 17640838 C A RRBP1 Silent p.V105V 0.22 TCGA-85-8582-01 20 30522587 30522587 C A TTLL9 Missense_Mutation p.N300K 0.14 tolerated(0.42) benign(0.14) TCGA-85-8582-01 20 31044086 31044086 G T C20orf112 Silent p.A74A 0.15 TCGA-85-8582-01 20 35284919 35284919 C - NDRG3 Frame_Shift_Del p.G292Dfs*5 0.19 TCGA-85-8582-01 20 37356978 37356978 A T SLC32A1 Missense_Mutation p.D425V 0.20 deleterious(0.02) possibly_damaging(0.616) TCGA-85-8582-01 20 43056974 43056974 G T HNF4A Splice_Site p.X377_splice 0.14 TCGA-85-8582-01 20 47342863 47342863 C A PREX1 Silent p.P195P 0.23 TCGA-85-8582-01 20 51872902 51872902 C G TSHZ2 Missense_Mutation p.Q969E 0.12 tolerated(0.17) benign(0.077) TCGA-85-8582-01 20 56726076 56726076 A T C20orf85 Missense_Mutation p.Q19L 0.25 tolerated(0.1) probably_damaging(0.943) TCGA-85-8582-01 20 57828031 57828031 A C ZNF831 Splice_Site p.X1343_splice 0.16 TCGA-85-8582-01 20 60448869 60448869 G T CDH4 Missense_Mutation p.Q321H 0.18 deleterious(0) benign(0.405) TCGA-85-8582-01 20 62737601 62737601 G T NPBWR2 Missense_Mutation p.P195Q 0.20 tolerated(0.58) possibly_damaging(0.647) TCGA-85-8582-01 21 39580587 39580587 G A DSCR10 RNA 0.27 TCGA-85-8582-01 22 17073416 17073416 G A CCT8L2 Silent p.L9L 0.22 TCGA-85-8582-01 22 22127209 22127209 C A MAPK1 Missense_Mutation p.A307S 0.24 deleterious(0.02) possibly_damaging(0.451) TCGA-85-8582-01 22 25240902 25240902 T G SGSM1 Missense_Mutation p.F34L 0.17 deleterious(0) possibly_damaging(0.844) TCGA-85-8582-01 22 36236320 36236320 C A RBFOX2 Intron 0.25 TCGA-85-8582-01 22 38075714 38075714 A T LGALS1 Silent p.A122A 0.29 TCGA-85-8582-01 2 101009599 101009599 C A CHST10 3'UTR 0.43 TCGA-85-8582-01 2 103310964 103310964 T A SLC9A2 Splice_Site p.X505_splice 0.13 TCGA-85-8582-01 2 10559881 10559881 G A HPCAL1 5'UTR 0.13 TCGA-85-8582-01 2 130897505 130897505 C T CCDC74B Silent p.T322T 0.10 TCGA-85-8582-01 2 130931138 130931138 C A SMPD4 Missense_Mutation p.G112V 0.22 deleterious(0.02) possibly_damaging(0.887) TCGA-85-8582-01 2 130949445 130949445 C T TUBA3E Missense_Mutation p.D438N 0.19 deleterious_low_confidence(0.03) possibly_damaging(0.615) TCGA-85-8582-01 2 138033519 138033519 G C THSD7B Missense_Mutation p.C808S 0.16 deleterious(0) benign(0.291) TCGA-85-8582-01 2 149227210 149227210 G T MBD5 Missense_Mutation p.L566F 0.13 tolerated(0.16) possibly_damaging(0.765) TCGA-85-8582-01 2 160734982 160734982 C A LY75-CD302 Missense_Mutation p.D543Y 0.11 deleterious(0.03) probably_damaging(0.996) TCGA-85-8582-01 2 162751309 162751309 G C SLC4A10 Missense_Mutation p.E439Q 0.12 deleterious(0) probably_damaging(0.993) TCGA-85-8582-01 2 168104268 168104268 A G XIRP2 Silent p.G2122G 0.26 TCGA-85-8582-01 2 177054748 177054748 C A HOXD1 Silent p.R289R 0.07 TCGA-85-8582-01 2 178936560 178936560 C T PDE11A Missense_Mutation p.R202H 0.09 deleterious(0) probably_damaging(0.964) TCGA-85-8582-01 2 179422760 179422760 A G TTN Silent p.S29107S 0.12 TCGA-85-8582-01 2 179499894 179499894 G T TTN Missense_Mutation p.P14008T 0.06 TCGA-85-8582-01 2 179553804 179553804 C T TTN Missense_Mutation p.A10691T 0.07 TCGA-85-8582-01 2 179585245 179585245 A G TTN Silent p.F7748F 0.16 TCGA-85-8582-01 2 179604528 179604528 A T TTN Missense_Mutation p.C4478S 0.10 TCGA-85-8582-01 2 179642549 179642549 T A TTN Silent p.L1454L 0.09 TCGA-85-8582-01 2 182392048 182392048 G C ITGA4 Silent p.V788V 0.16 TCGA-85-8582-01 2 200820439 200820439 T C C2orf47 5'UTR 0.14 TCGA-85-8582-01 2 211421493 211421493 G T CPS1 Missense_Mutation p.R18S 0.13 deleterious_low_confidence(0) benign(0.033) TCGA-85-8582-01 2 217124142 217124142 G A MARCH4 Missense_Mutation p.H376Y 0.10 deleterious(0) possibly_damaging(0.775) TCGA-85-8582-01 2 219130380 219130380 G A AAMP Missense_Mutation p.T302I 0.07 tolerated(0.09) benign(0.091) TCGA-85-8582-01 2 220098144 220098144 A T ANKZF1 Missense_Mutation p.T270S 0.12 deleterious(0.04) benign(0.004) TCGA-85-8582-01 2 220439727 220439727 C A INHA Missense_Mutation p.L194M 0.10 deleterious(0.02) possibly_damaging(0.864) TCGA-85-8582-01 2 228194371 228194371 A C MFF 5'UTR 0.12 TCGA-85-8582-01 2 231774764 231774764 G T GPR55 Missense_Mutation p.S305Y 0.14 deleterious(0.03) probably_damaging(0.962) TCGA-85-8582-01 2 242523942 242523942 C A THAP4 3'UTR 0.17 TCGA-85-8582-01 2 264894 264894 G T ACP1 5'UTR 0.18 TCGA-85-8582-01 2 27373233 27373233 G T TCF23 Missense_Mutation p.K155N 0.08 tolerated(0.09) probably_damaging(0.998) TCGA-85-8582-01 2 60688054 60688054 C A BCL11A Missense_Mutation p.A665S 0.08 tolerated(0.07) benign(0.036) TCGA-85-8582-01 2 64323605 64323605 G A PELI1 Missense_Mutation p.P148L 0.14 deleterious(0) possibly_damaging(0.831) TCGA-85-8582-01 2 77746832 77746832 T A LRRTM4 Missense_Mutation p.I55F 0.09 deleterious(0.01) possibly_damaging(0.482) TCGA-85-8582-01 2 89953086 89953086 C G IGKV1D-33 Missense_Mutation p.Q28E 0.08 deleterious(0) probably_damaging(0.959) TCGA-85-8582-01 2 96957192 96957192 C A SNRNP200 Missense_Mutation p.A787S 0.17 deleterious(0) probably_damaging(1) TCGA-85-8582-01 2 99725881 99725881 T A TSGA10 Missense_Mutation p.S8C 0.06 deleterious(0) probably_damaging(0.938) TCGA-85-8582-01 2 99797400 99797400 T C MITD1 Silent p.A15A 0.16 TCGA-85-8582-01 3 101483718 101483718 A T CEP97 Missense_Mutation p.T641S 0.18 tolerated(1) benign(0.005) TCGA-85-8582-01 3 113784113 113784113 G T QTRTD1 Silent p.L15L 0.17 TCGA-85-8582-01 3 133476712 133476712 G T TF Missense_Mutation p.V324F 0.19 deleterious(0) probably_damaging(0.984) TCGA-85-8582-01 3 138417892 138417892 C A PIK3CB Missense_Mutation p.D543Y 0.13 deleterious(0) possibly_damaging(0.877) TCGA-85-8582-01 3 142561823 142561823 G A PCOLCE2 Silent p.D172D 0.19 TCGA-85-8582-01 3 148562530 148562530 A G CPB1 Missense_Mutation p.R252G 0.22 deleterious(0) probably_damaging(1) TCGA-85-8582-01 3 186338580 186338580 G T AHSG Missense_Mutation p.G322V 0.07 deleterious(0) probably_damaging(0.996) TCGA-85-8582-01 3 19554770 19554770 G A KCNH8 Silent p.L796L 0.16 TCGA-85-8582-01 3 25777641 25777641 C A NGLY1 Splice_Site p.X335_splice 0.29 TCGA-85-8582-01 3 33866828 33866828 A T PDCD6IP Silent p.T204T 0.21 TCGA-85-8582-01 3 48612500 48612500 G A COL7A1 Silent p.P2092P 0.12 TCGA-85-8582-01 3 49153744 49153744 G T USP19 Missense_Mutation p.H442N 0.19 tolerated(0.8) benign(0.01) TCGA-85-8582-01 3 49898212 49898212 G T CAMKV Missense_Mutation p.R238S 0.07 tolerated(0.33) probably_damaging(0.967) TCGA-85-8582-01 3 52543272 52543272 A C STAB1 Missense_Mutation p.D761A 0.12 tolerated(0.21) benign(0.004) TCGA-85-8582-01 3 52786332 52786332 G A NEK4 Silent p.S328S 0.06 TCGA-85-8582-01 3 53842747 53842747 C T CACNA1D Missense_Mutation p.P1961S 0.07 tolerated_low_confidence(0.26) probably_damaging(0.998) TCGA-85-8582-01 3 86114857 86114857 G T CADM2 Missense_Mutation p.G391V 0.08 deleterious(0) probably_damaging(0.956) TCGA-85-8582-01 3 98073252 98073252 T C OR5K4 Silent p.Y185Y 0.19 TCGA-85-8582-01 4 13601362 13601362 C A BOD1L1 Missense_Mutation p.G2388W 0.09 probably_damaging(0.988) TCGA-85-8582-01 4 140640985 140640985 C G MAML3 Missense_Mutation p.G970A 0.09 benign(0.012) TCGA-85-8582-01 4 141543644 141543644 C A TBC1D9 Missense_Mutation p.S1169I 0.13 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-85-8582-01 4 151504505 151504505 G A MAB21L2 Silent p.R108R 0.12 TCGA-85-8582-01 4 155491618 155491618 G A FGB Missense_Mutation p.G431E 0.08 deleterious(0) probably_damaging(1) TCGA-85-8582-01 4 155505620 155505620 G T FGA Missense_Mutation p.L753I 0.13 deleterious(0) probably_damaging(0.971) TCGA-85-8582-01 4 156710984 156710984 G C GUCY1B3 Missense_Mutation p.R139T 0.11 deleterious(0) probably_damaging(0.937) TCGA-85-8582-01 4 158142911 158142911 C A GRIA2 Missense_Mutation p.H61N 0.11 tolerated(0.33) possibly_damaging(0.496) TCGA-85-8582-01 4 164394568 164394568 C G TKTL2 Missense_Mutation p.D107H 0.08 tolerated(0.08) possibly_damaging(0.84) TCGA-85-8582-01 4 167983689 167983689 C A SPOCK3 Splice_Site p.X67_splice 0.10 TCGA-85-8582-01 4 189068112 189068112 G C TRIML1 Silent p.L331L 0.12 TCGA-85-8582-01 4 2272483 2272483 G - ZFYVE28 Frame_Shift_Del p.T878Sfs*41 0.16 TCGA-85-8582-01 4 26430366 26430366 A G RBPJ Missense_Mutation p.T271A 0.13 tolerated(0.49) benign(0.012) TCGA-85-8582-01 4 46264065 46264065 T A GABRA2 Missense_Mutation p.M313L 0.12 tolerated(0.16) benign(0.246) TCGA-85-8582-01 4 46264066 46264066 G T GABRA2 Silent p.A312A 0.12 TCGA-85-8582-01 4 46737213 46737213 G T COX7B2 5'UTR 0.08 TCGA-85-8582-01 4 69093580 69093580 A T TMPRSS11B 3'UTR 0.16 TCGA-85-8582-01 4 71024363 71024363 G T C4orf40 Nonsense_Mutation p.E132* 0.13 TCGA-85-8582-01 4 71275346 71275346 G T PROL1 Missense_Mutation p.G101C 0.08 tolerated_low_confidence(0.11) probably_damaging(0.984) TCGA-85-8582-01 4 91701606 91701606 G T CCSER1 Intron 0.17 TCGA-85-8582-01 4 98902320 98902320 C T STPG2 Silent p.E254E 0.09 TCGA-85-8582-01 5 13794061 13794061 T C DNAH5 Missense_Mutation p.N2665S 0.16 possibly_damaging(0.621) TCGA-85-8582-01 5 13885310 13885310 G A DNAH5 Missense_Mutation p.T924I 0.35 possibly_damaging(0.507) TCGA-85-8582-01 5 140182240 140182240 G C PCDHA3 Missense_Mutation p.E486D 0.20 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-85-8582-01 5 140552856 140552856 C T PCDHB7 Missense_Mutation p.T147I 0.17 tolerated_low_confidence(0.07) benign(0.003) TCGA-85-8582-01 5 140589931 140589931 C A PCDHB12 Silent p.A484A 0.16 TCGA-85-8582-01 5 15937136 15937136 G T FBXL7 Missense_Mutation p.E439D 0.08 tolerated(0.7) possibly_damaging(0.755) TCGA-85-8582-01 5 168110970 168110970 C A SLIT3 Splice_Site p.X1229_splice 0.17 TCGA-85-8582-01 5 168110971 168110971 C A SLIT3 Missense_Mutation p.S1229I 0.17 deleterious(0.01) possibly_damaging(0.863) TCGA-85-8582-01 5 178140475 178140475 T - ZNF354A Frame_Shift_Del p.K135Sfs*10 0.10 TCGA-85-8582-01 5 178580517 178580517 C G ADAMTS2 Missense_Mutation p.G497A 0.17 deleterious(0) probably_damaging(0.999) TCGA-85-8582-01 5 21755825 21755825 A G CDH12 Missense_Mutation p.I587T 0.09 deleterious(0) probably_damaging(0.977) TCGA-85-8582-01 5 34850372 34850372 G A TTC23L Missense_Mutation p.R113Q 0.05 tolerated(1) benign(0) TCGA-85-8582-01 5 42719325 42719325 T G GHR Silent p.L572L 0.08 TCGA-85-8582-01 5 57913579 57913579 C A RAB3C Missense_Mutation p.S45Y 0.12 deleterious(0) probably_damaging(0.962) TCGA-85-8582-01 5 65350657 65350657 A G ERBB2IP Missense_Mutation p.K1171E 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-85-8582-01 5 94852872 94852872 C A TTC37 Nonsense_Mutation p.E757* 0.12 TCGA-85-8582-01 6 100957291 100957291 C A ASCC3 Missense_Mutation p.D2194Y 0.17 deleterious_low_confidence(0) benign(0.143) TCGA-85-8582-01 6 152757201 152757201 C A SYNE1 Missense_Mutation p.Q1395H 0.19 possibly_damaging(0.836) TCGA-85-8582-01 6 159457186 159457186 C A TAGAP Missense_Mutation p.M623I 0.23 deleterious(0.01) benign(0.235) TCGA-85-8582-01 6 165715278 165715278 C A C6orf118 Missense_Mutation p.R178L 0.20 tolerated(0.07) benign(0.038) TCGA-85-8582-01 6 166796387 166796387 G T MPC1 5'UTR 0.19 TCGA-85-8582-01 6 26043778 26043778 C A HIST1H2BB Missense_Mutation p.E36D 0.08 deleterious_low_confidence(0.02) benign(0.002) TCGA-85-8582-01 6 28543321 28543321 A T SCAND3 Missense_Mutation p.D387E 0.19 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-85-8582-01 6 30166211 30166211 C T TRIM26 Missense_Mutation p.A177T 0.10 deleterious(0.03) benign(0.022) TCGA-85-8582-01 6 31170285 31170285 G T HCG27 Missense_Mutation p.K87N 0.16 deleterious_low_confidence(0.02) benign(0.039) TCGA-85-8582-01 6 32065901 32065901 G C TNXB Silent p.P25P 0.18 TCGA-85-8582-01 6 34498111 34498111 G T PACSIN1 Missense_Mutation p.G294C 0.22 deleterious(0) probably_damaging(1) TCGA-85-8582-01 6 38754605 38754605 C T DNAH8 Silent p.P603P 0.15 TCGA-85-8582-01 6 49754532 49754532 G A PGK2 Silent p.R123R 0.24 TCGA-85-8582-01 6 51771032 51771032 T A PKHD1 Missense_Mutation p.L2263F 0.09 tolerated(0.32) possibly_damaging(0.878) TCGA-85-8582-01 6 54130816 54130816 T C MLIP 3'UTR 0.11 TCGA-85-8582-01 6 55924824 55924824 C A COL21A1 Missense_Mutation p.G867V 0.12 deleterious(0) possibly_damaging(0.727) TCGA-85-8582-01 6 79711829 79711829 T A PHIP Missense_Mutation p.M556L 0.07 tolerated(0.25) benign(0) TCGA-85-8582-01 6 97634386 97634386 C G MMS22L Silent p.A740A 0.11 TCGA-85-8582-01 7 11581094 11581094 A T THSD7A Missense_Mutation p.C592S 0.25 deleterious(0) probably_damaging(0.995) TCGA-85-8582-01 7 121944012 121944012 C A FEZF1 Missense_Mutation p.L160F 0.18 tolerated(0.11) benign(0.005) TCGA-85-8582-01 7 129989841 129989841 G T CPA5 Missense_Mutation p.R75M 0.21 tolerated(0.1) possibly_damaging(0.874) TCGA-85-8582-01 7 130042541 130042541 C A CEP41 Silent p.L174L 0.09 TCGA-85-8582-01 7 142013442 142013442 C A TRBV4-1 Silent p.A99A 0.17 TCGA-85-8582-01 7 142364609 142364609 G T TRBV24-1 Nonsense_Mutation p.G82* 0.24 TCGA-85-8582-01 7 142583301 142583301 C A TRPV6 5'UTR 0.13 TCGA-85-8582-01 7 150656757 150656757 G T KCNH2 Missense_Mutation p.F125L 0.12 deleterious(0.04) possibly_damaging(0.659) TCGA-85-8582-01 7 154684818 154684818 G T DPP6 3'UTR 0.23 TCGA-85-8582-01 7 154862941 154862941 G A HTR5A-AS1 Nonsense_Mutation p.R25* 0.13 TCGA-85-8582-01 7 31848684 31848684 C G PDE1C Missense_Mutation p.D678H 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.833) TCGA-85-8582-01 7 35673459 35673459 C A HERPUD2 Missense_Mutation p.E354D 0.24 tolerated(0.17) benign(0.088) TCGA-85-8582-01 7 56156555 56156555 C T PHKG1 Missense_Mutation p.G27D 0.18 deleterious(0) probably_damaging(0.988) TCGA-85-8582-01 7 72657339 72657339 C A GTF2IRD2P1 RNA 0.05 TCGA-85-8582-01 7 94055745 94055745 G C COL1A2 Missense_Mutation p.G1003A 0.27 unknown(0) TCGA-85-8582-01 8 110255108 110255108 A T NUDCD1 3'UTR 0.29 TCGA-85-8582-01 8 113267569 113267569 C A CSMD3 Missense_Mutation p.C3317F 0.12 deleterious(0) benign(0.021) TCGA-85-8582-01 8 113529454 113529454 C G CSMD3 Missense_Mutation p.S1522T 0.08 tolerated(0.92) probably_damaging(0.97) TCGA-85-8582-01 8 121061937 121061937 G C DEPTOR Missense_Mutation p.E408D 0.24 tolerated_low_confidence(0.13) benign(0.008) TCGA-85-8582-01 8 133850045 133850045 G T PHF20L1 Missense_Mutation p.R727L 0.21 deleterious(0) probably_damaging(0.96) TCGA-85-8582-01 8 139263216 139263216 G A FAM135B Missense_Mutation p.T137M 0.07 deleterious(0) benign(0.076) TCGA-85-8582-01 8 144995492 144995492 C T PLEC Missense_Mutation p.G2970S 0.08 probably_damaging(1) TCGA-85-8582-01 8 146068443 146068443 A G ZNF7 Missense_Mutation p.I651V 0.18 tolerated(0.33) benign(0.194) TCGA-85-8582-01 8 15967728 15967728 C A MSR1 Splice_Site p.X408_splice 0.09 TCGA-85-8582-01 8 27375577 27375577 A C EPHX2 Missense_Mutation p.E311D 0.19 deleterious(0.02) benign(0.002) TCGA-85-8582-01 8 39678550 39678550 C G ADAM2 Missense_Mutation p.D162H 0.24 tolerated(0.09) benign(0.124) TCGA-85-8582-01 8 54163479 54163479 C - OPRK1 Frame_Shift_Del p.G40Afs*29 0.16 TCGA-85-8582-01 8 62588621 62588621 C - ASPH Intron 0.21 TCGA-85-8582-01 8 69033203 69033203 C A PREX2 Silent p.R1215R 0.14 TCGA-85-8582-01 8 70536186 70536186 C G SULF1 Missense_Mutation p.P535R 0.09 tolerated(0.06) possibly_damaging(0.806) TCGA-85-8582-01 8 75233152 75233152 C A JPH1 Missense_Mutation p.G124V 0.16 deleterious(0.03) benign(0.077) TCGA-85-8582-01 8 77616834 77616834 G T ZFHX4 Missense_Mutation p.A171S 0.24 benign(0.005) TCGA-85-8582-01 8 77764480 77764480 C G ZFHX4 Missense_Mutation p.L1775V 0.24 possibly_damaging(0.567) TCGA-85-8582-01 8 77766999 77766999 G T ZFHX4 Silent p.P2614P 0.07 TCGA-85-8582-01 8 89068383 89068383 C A MMP16 Missense_Mutation p.G449V 0.26 deleterious(0.01) possibly_damaging(0.795) TCGA-85-8582-01 9 104341508 104341508 G T GRIN3A Silent p.S967S 0.06 TCGA-85-8582-01 9 109734366 109734366 C A ZNF462 Missense_Mutation p.R2170S 0.19 benign(0.005) TCGA-85-8582-01 9 113148250 113148250 G A SVEP1 Silent p.L3389L 0.22 TCGA-85-8582-01 9 123620446 123620446 C A PHF19 Missense_Mutation p.A507S 0.16 tolerated(0.72) benign(0.027) TCGA-85-8582-01 9 131071726 131071726 G T TRUB2 3'UTR 0.25 TCGA-85-8582-01 9 137713974 137713974 C T COL5A1 Missense_Mutation p.P1529L 0.06 unknown(0) TCGA-85-8582-01 9 140773607 140773607 G T CACNA1B Missense_Mutation p.R129L 0.25 deleterious(0.01) benign(0.077) TCGA-85-8582-01 9 27949125 27949125 A G LINGO2 Silent p.P515P 0.20 TCGA-85-8582-01 9 8339013 8339013 G C PTPRD Missense_Mutation p.S1763C 0.31 deleterious(0.01) probably_damaging(0.995) TCGA-85-8582-01 9 97087973 97087973 G T NUTM2F Missense_Mutation p.T87K 0.19 deleterious(0) probably_damaging(0.948) TCGA-85-8582-01 X 102337198 102337198 G T NXF3 Missense_Mutation p.T292N 0.19 tolerated(0.22) benign(0) TCGA-85-8582-01 X 13338058 13338058 A T ATXN3L 5'UTR 0.26 TCGA-85-8582-01 X 144905585 144905585 A T SLITRK2 Missense_Mutation p.N548Y 0.23 deleterious(0) possibly_damaging(0.498) TCGA-85-8582-01 X 151123964 151123964 G C GABRE Missense_Mutation p.T338R 0.24 deleterious(0) probably_damaging(0.997) TCGA-85-8582-01 X 152939705 152939705 C A PNCK 5'UTR 0.15 TCGA-85-8582-01 X 153033868 153033868 G T PLXNB3 Missense_Mutation p.Q440H 0.20 deleterious(0.04) possibly_damaging(0.712) TCGA-85-8582-01 X 15364138 15364138 T A FIGF 3'UTR 0.20 TCGA-85-8582-01 X 1544490 1544490 C A ASMTL Missense_Mutation p.A330S 0.16 deleterious(0.04) possibly_damaging(0.8) TCGA-85-8582-01 X 1584661 1584661 C G P2RY8 Missense_Mutation p.R264P 0.13 deleterious(0) probably_damaging(0.985) TCGA-85-8582-01 X 26212774 26212774 C A MAGEB6 Missense_Mutation p.P271T 0.21 tolerated(0.81) benign(0.042) TCGA-85-8582-01 X 27999295 27999295 C A DCAF8L1 Missense_Mutation p.D53Y 0.12 deleterious_low_confidence(0.04) possibly_damaging(0.808) TCGA-85-8582-01 X 64749537 64749537 T C LAS1L Missense_Mutation p.S246G 0.10 tolerated(0.07) benign(0.071) TCGA-85-8582-01 X 69942510 69942510 T C TEX11 Missense_Mutation p.D336G 0.22 deleterious(0.01) possibly_damaging(0.696) TCGA-85-8582-01 X 70345537 70345537 T G MED12 Missense_Mutation p.L799R 0.17 benign(0.011) TCGA-85-8582-01 X 70345538 70345538 G C MED12 Silent p.L799L 0.17 TCGA-85-8582-01 X 78618537 78618537 C A ITM2A Missense_Mutation p.A115S 0.28 tolerated(0.05) possibly_damaging(0.818) TCGA-85-8582-01 X 86772890 86772890 T A KLHL4 5'UTR 0.20 TCGA-85-8582-01 Y 9195522 9195522 G T TSPY8 Missense_Mutation p.R24L 0.23 tolerated(0.15) benign(0.06) TCGA-85-8584-01 10 107015481 107015481 G T SORCS3 Missense_Mutation p.A1087S 0.17 deleterious(0.04) possibly_damaging(0.802) TCGA-85-8584-01 10 113915812 113915812 C T GPAM Splice_Site p.X708_splice 0.24 TCGA-85-8584-01 10 115423593 115423593 C A NRAP Nonsense_Mutation p.E17* 0.15 TCGA-85-8584-01 10 12191900 12191900 G C SEC61A2 Silent p.T134T 0.23 TCGA-85-8584-01 10 135372841 135372841 C G SYCE1 Missense_Mutation p.E54Q 0.10 deleterious(0) probably_damaging(0.979) TCGA-85-8584-01 10 25886972 25886972 C - GPR158 Frame_Shift_Del p.L807* 0.20 TCGA-85-8584-01 10 27313452 27313452 C A ANKRD26 Nonsense_Mutation p.E1337* 0.16 TCGA-85-8584-01 10 27313453 27313453 C A ANKRD26 Missense_Mutation p.M1336I 0.16 tolerated(0.49) benign(0.001) TCGA-85-8584-01 10 27539726 27539726 A T RP11-85G18.6 RNA 0.16 TCGA-85-8584-01 10 61831782 61831782 C A ANK3 Nonsense_Mutation p.E2953* 0.23 TCGA-85-8584-01 10 63170105 63170105 G A TMEM26 Missense_Mutation p.S361F 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.838) TCGA-85-8584-01 10 7239628 7239628 C A SFMBT2 Missense_Mutation p.C527F 0.17 deleterious(0.03) possibly_damaging(0.732) TCGA-85-8584-01 10 72505053 72505053 C G ADAMTS14 Missense_Mutation p.H755D 0.22 deleterious(0) possibly_damaging(0.597) TCGA-85-8584-01 10 73464736 73464736 C A CDH23 Silent p.P526P 0.19 TCGA-85-8584-01 10 75574841 75574841 G A CAMK2G Missense_Mutation p.R535C 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-85-8584-01 10 88459081 88459081 C T LDB3 Intron 0.15 TCGA-85-8584-01 11 100912736 100912736 T C PGR Silent p.G862G 0.22 TCGA-85-8584-01 11 102220482 102220482 A G BIRC2 5'UTR 0.26 TCGA-85-8584-01 11 104866520 104866520 A T CASP5 Missense_Mutation p.I432K 0.22 deleterious(0.03) possibly_damaging(0.905) TCGA-85-8584-01 11 118919890 118919890 C T HYOU1 Missense_Mutation p.G611E 0.11 tolerated(0.26) benign(0.098) TCGA-85-8584-01 11 119210169 119210169 C T C1QTNF5 Missense_Mutation p.E202K 0.16 deleterious(0.02) possibly_damaging(0.762) TCGA-85-8584-01 11 124179812 124179812 A T OR8D1 Missense_Mutation p.M284K 0.15 deleterious(0) benign(0.332) TCGA-85-8584-01 11 124179814 124179814 G T OR8D1 Silent p.P283P 0.15 TCGA-85-8584-01 11 1254334 1254334 C A MUC5B Missense_Mutation p.D719E 0.09 unknown(0) TCGA-85-8584-01 11 132184556 132184556 C G NTM Missense_Mutation p.S298C 0.14 tolerated(0.15) possibly_damaging(0.605) TCGA-85-8584-01 11 18373874 18373874 A G GTF2H1 Splice_Site p.X381_splice 0.20 TCGA-85-8584-01 11 320778 320778 G A IFITM3 Silent p.V12V 0.18 TCGA-85-8584-01 11 33053102 33053102 T A DEPDC7 Missense_Mutation p.S321T 0.19 tolerated(0.44) benign(0.004) TCGA-85-8584-01 11 380393 380393 C A B4GALNT4 Missense_Mutation p.F939L 0.22 deleterious(0.03) unknown(0) TCGA-85-8584-01 11 40137339 40137339 A - LRRC4C Frame_Shift_Del p.F168Lfs*10 0.10 TCGA-85-8584-01 11 44148449 44148449 G T EXT2 Silent p.P374P 0.17 TCGA-85-8584-01 11 5530003 5530003 C A UBQLN3 Missense_Mutation p.M262I 0.25 deleterious(0.02) benign(0.176) TCGA-85-8584-01 11 55322047 55322047 G T OR4C15 Missense_Mutation p.A89S 0.16 deleterious_low_confidence(0.02) possibly_damaging(0.782) TCGA-85-8584-01 11 5536232 5536232 C G UBQLNL 3'UTR 0.13 TCGA-85-8584-01 11 55653015 55653015 C A TRIM51 Silent p.P37P 0.18 TCGA-85-8584-01 11 55658781 55658781 G T TRIM51 Missense_Mutation p.E344D 0.14 deleterious(0.02) possibly_damaging(0.651) TCGA-85-8584-01 11 55659186 55659186 C G TRIM51 3'UTR 0.19 TCGA-85-8584-01 11 56128446 56128446 G T OR8J1 Missense_Mutation p.A242S 0.15 tolerated(0.07) possibly_damaging(0.794) TCGA-85-8584-01 11 56128599 56128599 C A OR8J1 Missense_Mutation p.L293M 0.11 deleterious(0) benign(0.213) TCGA-85-8584-01 11 57995626 57995626 C A OR10Q1 Missense_Mutation p.R241L 0.13 deleterious(0.01) benign(0.275) TCGA-85-8584-01 11 58190500 58190500 C G OR5B2 Missense_Mutation p.V79L 0.11 deleterious_low_confidence(0.02) benign(0.049) TCGA-85-8584-01 11 6191048 6191048 A - OR52B2 Frame_Shift_Del p.F170Sfs*3 0.20 TCGA-85-8584-01 11 62342669 62342669 C T TUT1 Missense_Mutation p.R879Q 0.17 tolerated(0.8) benign(0) TCGA-85-8584-01 11 64436059 64436059 G T NRXN2 Missense_Mutation p.D405E 0.13 deleterious(0) benign(0.004) TCGA-85-8584-01 11 6942673 6942673 C A OR2D3 Nonsense_Mutation p.Y147* 0.25 TCGA-85-8584-01 11 93468363 93468363 A G KIAA1731 3'Flank 0.18 TCGA-85-8584-01 12 105569824 105569824 C T APPL2 Missense_Mutation p.E623K 0.66 deleterious_low_confidence(0.05) benign(0.037) TCGA-85-8584-01 12 108043138 108043138 G T BTBD11 Intron 0.11 TCGA-85-8584-01 12 109306288 109306288 C A SVOP 3'UTR 0.07 TCGA-85-8584-01 12 10978666 10978666 T C TAS2R10 Missense_Mutation p.Q68R 0.55 tolerated(0.58) benign(0.001) TCGA-85-8584-01 12 113759119 113759119 C A SLC8B1 Missense_Mutation p.R64L 0.14 deleterious(0.03) probably_damaging(0.916) TCGA-85-8584-01 12 116446587 116446587 G A MED13L Missense_Mutation p.P544L 0.20 deleterious(0) unknown(0) TCGA-85-8584-01 12 116446588 116446588 G T MED13L Missense_Mutation p.P544T 0.20 deleterious(0) unknown(0) TCGA-85-8584-01 12 120594265 120594265 C T GCN1L1 Silent p.R1104R 0.14 TCGA-85-8584-01 12 129442179 129442179 C A GLT1D1 Silent p.S210S 0.17 TCGA-85-8584-01 12 48389076 48389076 G T COL2A1 Missense_Mutation p.R242S 0.29 unknown(0) TCGA-85-8584-01 12 52715160 52715160 A G KRT83 5'UTR 0.31 TCGA-85-8584-01 12 53400231 53400231 C T EIF4B 5'UTR 0.18 TCGA-85-8584-01 12 54856499 54856499 G T GTSF1 Silent p.T85T 0.23 TCGA-85-8584-01 12 57865236 57865236 C G GLI1 Missense_Mutation p.Q905E 0.10 deleterious(0) probably_damaging(0.974) TCGA-85-8584-01 12 62795053 62795053 G T USP15 Missense_Mutation p.V921L 0.09 tolerated(0.08) probably_damaging(0.951) TCGA-85-8584-01 12 62979180 62979180 C T MON2 Silent p.Y1602Y 0.26 TCGA-85-8584-01 12 6981602 6981602 C T SPSB2 Missense_Mutation p.G155E 0.44 tolerated(0.27) benign(0.012) TCGA-85-8584-01 12 6981621 6981621 C T SPSB2 Missense_Mutation p.A149T 0.49 tolerated(0.38) possibly_damaging(0.831) TCGA-85-8584-01 12 6981646 6981646 C T SPSB2 Silent p.L140L 0.48 TCGA-85-8584-01 12 7014903 7014903 G A LRRC23 Missense_Mutation p.G36R 0.58 deleterious(0.02) unknown(0) TCGA-85-8584-01 12 7015104 7015104 G A LRRC23 Silent p.L74L 0.52 TCGA-85-8584-01 12 7016522 7016522 G A LRRC23 Silent p.L178L 0.47 TCGA-85-8584-01 12 7016543 7016543 G A LRRC23 Silent p.E185E 0.47 TCGA-85-8584-01 12 7016594 7016594 G A LRRC23 Silent p.L202L 0.47 TCGA-85-8584-01 12 7016597 7016597 G A LRRC23 Silent p.K203K 0.46 TCGA-85-8584-01 12 7016690 7016690 G A LRRC23 Intron 0.46 TCGA-85-8584-01 12 78334102 78334102 T A NAV3 Missense_Mutation p.Y83N 0.18 deleterious(0) probably_damaging(1) TCGA-85-8584-01 13 19753516 19753516 C T TUBA3C Missense_Mutation p.R64K 0.16 deleterious_low_confidence(0) possibly_damaging(0.628) TCGA-85-8584-01 13 25483928 25483928 C A CENPJ Nonsense_Mutation p.G289* 0.24 TCGA-85-8584-01 13 50066177 50066177 G T SETDB2 3'UTR 0.41 TCGA-85-8584-01 14 105419008 105419008 G A AHNAK2 Missense_Mutation p.P927L 0.15 probably_damaging(0.999) TCGA-85-8584-01 14 23019500 23019500 G T TRAC Splice_Site p.X107_splice 0.21 TCGA-85-8584-01 14 23533392 23533392 G T ACIN1 Silent p.I897I 0.18 TCGA-85-8584-01 14 31604162 31604162 T A HECTD1 Missense_Mutation p.N1165I 0.10 deleterious(0) probably_damaging(0.978) TCGA-85-8584-01 14 36155793 36155793 C G RALGAPA1 Silent p.L838L 0.12 TCGA-85-8584-01 14 42355938 42355938 G T LRFN5 Missense_Mutation p.C37F 0.20 deleterious(0) probably_damaging(0.999) TCGA-85-8584-01 14 72921240 72921240 T A RGS6 Silent p.T63T 0.21 TCGA-85-8584-01 14 77272993 77272993 C A ANGEL1 Silent p.S382S 0.14 TCGA-85-8584-01 14 77709275 77709275 G T TMEM63C Missense_Mutation p.W406L 0.13 deleterious(0) probably_damaging(0.968) TCGA-85-8584-01 15 66618581 66618581 A - DIS3L Frame_Shift_Del p.K695Rfs*37 0.29 TCGA-85-8584-01 16 1129698 1129698 C A SSTR5 Missense_Mutation p.P277H 0.20 deleterious(0) probably_damaging(1) TCGA-85-8584-01 16 1129699 1129699 C A SSTR5 Silent p.P277P 0.21 TCGA-85-8584-01 16 15833994 15833994 G T MYH11 Missense_Mutation p.L978I 0.14 benign(0.248) TCGA-85-8584-01 16 21110000 21110000 C G DNAH3 Missense_Mutation p.K819N 0.11 tolerated(0.29) benign(0.052) TCGA-85-8584-01 16 21222951 21222951 C A ZP2 5'UTR 0.21 TCGA-85-8584-01 16 29913109 29913109 C A ASPHD1 Silent p.R273R 0.21 TCGA-85-8584-01 16 49672618 49672618 G T ZNF423 Missense_Mutation p.R149S 0.07 tolerated(0.06) probably_damaging(0.999) TCGA-85-8584-01 16 56865913 56865913 G T NUP93 Missense_Mutation p.W415C 0.12 deleterious(0) probably_damaging(0.993) TCGA-85-8584-01 16 57722427 57722427 G A GPR97 3'UTR 0.32 TCGA-85-8584-01 16 58293813 58293813 A T CCDC113 Missense_Mutation p.K201I 0.19 deleterious(0) probably_damaging(0.984) TCGA-85-8584-01 16 70162987 70162987 A C PDPR Missense_Mutation p.D190A 0.08 tolerated(0.92) possibly_damaging(0.886) TCGA-85-8584-01 16 75269147 75269147 G A BCAR1 Silent p.D596D 0.06 TCGA-85-8584-01 16 84695422 84695422 G T KLHL36 Missense_Mutation p.D512Y 0.23 deleterious(0) probably_damaging(1) TCGA-85-8584-01 16 89650487 89650487 C A CPNE7 Silent p.R237R 0.16 TCGA-85-8584-01 17 10305013 10305013 A T MYH8 Silent p.T926T 0.21 TCGA-85-8584-01 17 10438445 10438445 G A MYH2 Missense_Mutation p.R709C 0.25 deleterious(0) probably_damaging(0.954) TCGA-85-8584-01 17 11684438 11684438 C A DNAH9 Nonsense_Mutation p.Y2555* 0.17 TCGA-85-8584-01 17 21825438 21825438 G T FAM27L RNA 0.11 TCGA-85-8584-01 17 27580752 27580752 T C CRYBA1 Missense_Mutation p.M151T 0.20 deleterious(0.04) probably_damaging(0.979) TCGA-85-8584-01 17 29592335 29592335 A G NF1 Missense_Mutation p.I1605V 0.13 tolerated(1) benign(0) TCGA-85-8584-01 17 35295427 35295427 G A LHX1 5'UTR 0.13 TCGA-85-8584-01 17 39041380 39041380 C A KRT20 Missense_Mutation p.V20L 0.14 tolerated(0.35) benign(0.026) TCGA-85-8584-01 17 39847051 39847051 C T EIF1 Silent p.D105D 0.14 TCGA-85-8584-01 17 39880980 39880980 C A HAP1 Silent p.R611R 0.18 TCGA-85-8584-01 17 39880981 39880981 C A HAP1 Missense_Mutation p.R611L 0.18 tolerated_low_confidence(0.21) unknown(0) TCGA-85-8584-01 17 42992786 42992786 C A GFAP Silent p.G23G 0.22 TCGA-85-8584-01 17 46214520 46214520 C T SKAP1 Intron 0.19 TCGA-85-8584-01 17 4889533 4889533 G C CAMTA2 Silent p.P18P 0.20 TCGA-85-8584-01 17 60069950 60069950 T A MED13 Missense_Mutation p.L738F 0.17 tolerated(0.42) possibly_damaging(0.622) TCGA-85-8584-01 17 60814553 60814553 G T MARCH10 Missense_Mutation p.P226T 0.20 tolerated(0.21) benign(0.093) TCGA-85-8584-01 17 72518939 72518939 G T CD300LB Missense_Mutation p.P219T 0.20 tolerated(0.34) benign(0.049) TCGA-85-8584-01 18 19995910 19995910 C A CTAGE1 Missense_Mutation p.G622V 0.13 deleterious(0) probably_damaging(0.982) TCGA-85-8584-01 18 58038591 58038591 C G MC4R Missense_Mutation p.R331T 0.16 tolerated_low_confidence(0.11) benign(0.024) TCGA-85-8584-01 18 67562981 67562981 G T CD226 Missense_Mutation p.A228E 0.13 deleterious(0) benign(0.428) TCGA-85-8584-01 19 11032511 11032511 C G CARM1 3'UTR 0.12 TCGA-85-8584-01 19 39876698 39876698 G A PAF1 Missense_Mutation p.S510L 0.12 deleterious_low_confidence(0.01) unknown(0) TCGA-85-8584-01 19 40828059 40828059 C A C19orf47 Silent p.A333A 0.16 TCGA-85-8584-01 19 41186870 41186870 C A NUMBL Silent p.G164G 0.41 TCGA-85-8584-01 19 41223258 41223258 G A ITPKC Missense_Mutation p.R73K 0.09 tolerated_low_confidence(0.29) benign(0.004) TCGA-85-8584-01 19 41268941 41268941 C G SNRPA Missense_Mutation p.Q188E 0.26 tolerated(1) benign(0.047) TCGA-85-8584-01 19 41601898 41601898 G T CYP2A13 3'UTR 0.16 TCGA-85-8584-01 19 41884358 41884358 G T TMEM91 Missense_Mutation p.Q48H 0.09 tolerated_low_confidence(0.12) benign(0.003) TCGA-85-8584-01 19 42085719 42085719 G T CEACAM21 Missense_Mutation p.Q146H 0.14 deleterious(0) possibly_damaging(0.474) TCGA-85-8584-01 19 53885626 53885626 G T ZNF525 3'UTR 0.19 TCGA-85-8584-01 19 54377001 54377001 G A MYADM Missense_Mutation p.C73Y 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-85-8584-01 19 54653431 54653431 G T CNOT3 Missense_Mutation p.A515S 0.09 tolerated(0.5) benign(0.002) TCGA-85-8584-01 19 55107365 55107365 C A LILRA1 Nonsense_Mutation p.S308* 0.13 TCGA-85-8584-01 19 55815080 55815080 G T BRSK1 Missense_Mutation p.G391V 0.16 deleterious(0.01) probably_damaging(0.953) TCGA-85-8584-01 19 6678004 6678004 C A C3 Missense_Mutation p.W1627C 0.19 deleterious(0) probably_damaging(1) TCGA-85-8584-01 19 9072455 9072455 G C MUC16 Silent p.T4997T 0.10 TCGA-85-8584-01 19 9087568 9087568 G T MUC16 Missense_Mutation p.P1416H 0.21 unknown(0) TCGA-85-8584-01 19 9087569 9087569 G T MUC16 Missense_Mutation p.P1416T 0.20 unknown(0) TCGA-85-8584-01 19 9091252 9091252 T C MUC16 Missense_Mutation p.K188R 0.36 unknown(0) TCGA-85-8584-01 1 107867059 107867059 C A NTNG1 Silent p.I134I 0.19 TCGA-85-8584-01 1 117552675 117552675 G T CD101 Missense_Mutation p.A83S 0.25 deleterious(0.01) probably_damaging(0.966) TCGA-85-8584-01 1 145440655 145440656 - A TXNIP Frame_Shift_Ins p.K287Efs*5 0.15 TCGA-85-8584-01 1 148932791 148932791 T A RP11-14N7.2 RNA 0.05 TCGA-85-8584-01 1 152759987 152759987 G C LCE1E Missense_Mutation p.G71A 0.22 deleterious_low_confidence(0) unknown(0) TCGA-85-8584-01 1 167097717 167097717 C A DUSP27 Silent p.R1117R 0.29 TCGA-85-8584-01 1 169524491 169524491 C T F5 Silent p.R349R 0.22 TCGA-85-8584-01 1 17570754 17570755 - G PADI1 3'UTR 0.09 TCGA-85-8584-01 1 19490887 19490887 G A UBR4 Silent p.P1520P 0.17 TCGA-85-8584-01 1 197128434 197128434 C A ZBTB41 3'UTR 0.30 TCGA-85-8584-01 1 201869661 201869661 C T LMOD1 Silent p.K160K 0.20 TCGA-85-8584-01 1 207697316 207697316 T A CR1 Missense_Mutation p.L283Q 0.21 tolerated(0.36) possibly_damaging(0.889) TCGA-85-8584-01 1 2160680 2160680 G C SKI Missense_Mutation p.E159Q 0.16 deleterious(0.03) probably_damaging(0.987) TCGA-85-8584-01 1 237540649 237540649 C A RYR2 Missense_Mutation p.P164T 0.21 benign(0.015) TCGA-85-8584-01 1 238045795 238045795 A C ZP4 Missense_Mutation p.I517S 0.14 deleterious(0.02) possibly_damaging(0.489) TCGA-85-8584-01 1 248756658 248756658 G T OR2T10 Missense_Mutation p.H138N 0.19 tolerated(0.11) benign(0.003) TCGA-85-8584-01 1 32196896 32196896 G T BAI2 Missense_Mutation p.F1295L 0.24 deleterious(0) probably_damaging(0.986) TCGA-85-8584-01 1 33557658 33557658 T A ADC Missense_Mutation p.M96K 0.14 deleterious(0) possibly_damaging(0.521) TCGA-85-8584-01 1 3428114 3428114 C T MEGF6 Missense_Mutation p.D372N 0.15 deleterious(0) probably_damaging(1) TCGA-85-8584-01 1 34330269 34330269 C G HMGB4 Silent p.L159L 0.19 TCGA-85-8584-01 1 35333208 35333208 C A DLGAP3 Missense_Mutation p.A836S 0.15 deleterious(0) probably_damaging(0.994) TCGA-85-8584-01 1 3563257 3563257 G A WRAP73 Silent p.R104R 0.15 TCGA-85-8584-01 1 43047055 43047055 G C CCDC30 Missense_Mutation p.E364Q 0.08 deleterious(0.01) probably_damaging(0.928) TCGA-85-8584-01 1 43893030 43893030 G T SZT2 Missense_Mutation p.G1114V 0.20 tolerated(0.06) benign(0.049) TCGA-85-8584-01 1 54722831 54722831 C A SSBP3 Missense_Mutation p.G159V 0.12 deleterious(0) probably_damaging(0.986) TCGA-85-8584-01 1 87043739 87043739 A T CLCA4 Silent p.P702P 0.11 TCGA-85-8584-01 1 9661404 9661404 C T TMEM201 Missense_Mutation p.A283V 0.11 tolerated(1) benign(0.01) TCGA-85-8584-01 20 20527381 20527381 G A RALGAPA2 Silent p.A1084A 0.18 TCGA-85-8584-01 20 2776044 2776044 T A CPXM1 Missense_Mutation p.Y580F 0.15 deleterious(0) probably_damaging(0.999) TCGA-85-8584-01 20 36625319 36625319 G A TTI1 Missense_Mutation p.L944F 0.15 deleterious(0) probably_damaging(0.991) TCGA-85-8584-01 20 40118538 40118538 G A CHD6 Silent p.T520T 0.22 TCGA-85-8584-01 20 57430057 57430057 C T GNAS Silent p.D579D 0.21 TCGA-85-8584-01 20 58349477 58349477 A G PHACTR3 Missense_Mutation p.N369S 0.19 tolerated(0.14) benign(0.001) TCGA-85-8584-01 20 58519269 58519269 G A FAM217B Missense_Mutation p.E91K 0.12 deleterious(0.01) probably_damaging(0.918) TCGA-85-8584-01 21 30433676 30433676 G A CCT8 Silent p.P449P 0.20 TCGA-85-8584-01 21 42754414 42754414 C A MX2 Missense_Mutation p.P219T 0.24 deleterious(0) possibly_damaging(0.825) TCGA-85-8584-01 21 42817461 42817461 G T MX1 Silent p.P365P 0.23 TCGA-85-8584-01 21 43846875 43846875 C A UBASH3A Missense_Mutation p.S372R 0.23 tolerated(0.38) benign(0.081) TCGA-85-8584-01 22 30127163 30127163 T A ZMAT5 3'UTR 0.19 TCGA-85-8584-01 22 37603006 37603006 G C SSTR3 Silent p.V279V 0.24 TCGA-85-8584-01 22 39262645 39262645 C A CBX6 Missense_Mutation p.A270S 0.40 tolerated(0.23) possibly_damaging(0.84) TCGA-85-8584-01 2 113147632 113147632 G T RGPD8 Missense_Mutation p.Q964K 0.11 tolerated(1) benign(0.034) TCGA-85-8584-01 2 130931163 130931163 C A SMPD4 Missense_Mutation p.G104C 0.12 deleterious(0) probably_damaging(0.991) TCGA-85-8584-01 2 131688760 131688760 A T ARHGEF4 Missense_Mutation p.K77M 0.11 deleterious_low_confidence(0.01) benign(0.201) TCGA-85-8584-01 2 132288402 132288402 T C CCDC74A Splice_Site p.X182_splice 0.22 TCGA-85-8584-01 2 133175452 133175452 G T GPR39 Missense_Mutation p.R279S 0.15 deleterious(0.03) benign(0.038) TCGA-85-8584-01 2 136570411 136570411 G A LCT Missense_Mutation p.P608L 0.19 deleterious(0) probably_damaging(1) TCGA-85-8584-01 2 158272232 158272232 G A CYTIP Missense_Mutation p.P346L 0.16 deleterious(0) probably_damaging(0.999) TCGA-85-8584-01 2 166243516 166243516 C G SCN2A Silent p.L1604L 0.17 TCGA-85-8584-01 2 179435516 179435516 G A TTN Missense_Mutation p.P25115S 0.15 TCGA-85-8584-01 2 182543304 182543304 C A NEUROD1 Missense_Mutation p.R95L 0.22 deleterious(0) possibly_damaging(0.492) TCGA-85-8584-01 2 18758146 18758146 C A NT5C1B Missense_Mutation p.R406L 0.15 deleterious(0) probably_damaging(0.999) TCGA-85-8584-01 2 21234577 21234577 G A APOB Silent p.V1721V 0.19 TCGA-85-8584-01 2 216974080 216974080 C T XRCC5 5'UTR 0.31 TCGA-85-8584-01 2 218749851 218749851 G C TNS1 Missense_Mutation p.R260G 0.17 deleterious(0) probably_damaging(1) TCGA-85-8584-01 2 220309387 220309387 C T SPEG Missense_Mutation p.A134V 0.14 benign(0.069) TCGA-85-8584-01 2 220346395 220346395 G T SPEG Missense_Mutation p.W1853L 0.18 probably_damaging(1) TCGA-85-8584-01 2 220431995 220431995 C A OBSL1 Missense_Mutation p.V613L 0.19 deleterious(0.01) possibly_damaging(0.688) TCGA-85-8584-01 2 230231699 230231699 G C DNER Missense_Mutation p.I664M 0.26 deleterious(0.01) possibly_damaging(0.837) TCGA-85-8584-01 2 234359581 234359581 G T DGKD Silent p.P684P 0.15 TCGA-85-8584-01 2 242312533 242312533 T C FARP2 Missense_Mutation p.I4T 0.15 tolerated_low_confidence(0.07) benign(0.157) TCGA-85-8584-01 2 26726678 26726678 C A OTOF Missense_Mutation p.G182V 0.23 tolerated(0.08) benign(0.33) TCGA-85-8584-01 2 27560360 27560360 A T GTF3C2 Nonsense_Mutation p.L339* 0.21 TCGA-85-8584-01 2 30748582 30748582 C G LCLAT1 Missense_Mutation p.I80M 0.20 deleterious(0.04) benign(0.091) TCGA-85-8584-01 2 31572644 31572644 C T XDH Silent p.K959K 0.06 TCGA-85-8584-01 2 49295410 49295410 G T FSHR Missense_Mutation p.L58I 0.21 tolerated(0.23) benign(0.009) TCGA-85-8584-01 2 68609692 68609692 G T PLEK Missense_Mutation p.M133I 0.18 deleterious(0.02) benign(0.079) TCGA-85-8584-01 2 74042540 74042540 C A C2orf78 Missense_Mutation p.P397Q 0.08 tolerated(1) benign(0.001) TCGA-85-8584-01 2 87085402 87085402 G A CD8B Missense_Mutation p.P61S 0.14 tolerated(0.07) benign(0.147) TCGA-85-8584-01 2 88390563 88390563 G T SMYD1 Missense_Mutation p.Q187H 0.15 tolerated(0.13) probably_damaging(0.975) TCGA-85-8584-01 2 95847845 95847845 A C ZNF2 Silent p.G424G 0.17 TCGA-85-8584-01 3 102171855 102171855 G T ZPLD1 Missense_Mutation p.D83Y 0.17 tolerated(0.38) possibly_damaging(0.891) TCGA-85-8584-01 3 102171856 102171856 A T ZPLD1 Missense_Mutation p.D83V 0.17 tolerated(0.38) benign(0.193) TCGA-85-8584-01 3 124416553 124416553 G T AC080008.1 5'Flank 0.17 TCGA-85-8584-01 3 132186118 132186118 G A DNAJC13 Silent p.L723L 0.20 TCGA-85-8584-01 3 133647718 133647718 A G C3orf36 5'UTR 0.18 TCGA-85-8584-01 3 15631115 15631115 A C HACL1 Missense_Mutation p.L105V 0.21 tolerated(0.36) benign(0.047) TCGA-85-8584-01 3 169487156 169487156 G C ACTRT3 Silent p.L51L 0.24 TCGA-85-8584-01 3 186917852 186917852 C T RTP1 Silent p.S262S 0.18 TCGA-85-8584-01 3 196746617 196746617 G A MFI2 Intron 0.17 TCGA-85-8584-01 3 36899185 36899185 T A TRANK1 Silent p.T632T 0.22 TCGA-85-8584-01 3 49547965 49547965 G T DAG1 5'UTR 0.18 TCGA-85-8584-01 3 57132447 57132447 G C IL17RD Nonsense_Mutation p.Y428* 0.20 TCGA-85-8584-01 3 58639499 58639499 C A FAM3D Missense_Mutation p.R8L 0.15 deleterious(0) probably_damaging(0.987) TCGA-85-8584-01 3 77651379 77651379 C T ROBO2 Missense_Mutation p.P974L 0.12 tolerated(0.6) possibly_damaging(0.713) TCGA-85-8584-01 3 81754661 81754661 C T GBE1 Missense_Mutation p.D83N 0.15 tolerated(0.32) benign(0.045) TCGA-85-8584-01 3 95374449 95374449 G T MTHFD2P1 RNA 0.16 TCGA-85-8584-01 4 128732766 128732766 T G HSPA4L Missense_Mutation p.F518C 0.17 tolerated(0.09) benign(0) TCGA-85-8584-01 4 13601763 13601763 C A BOD1L1 Missense_Mutation p.G2254V 0.17 benign(0.001) TCGA-85-8584-01 4 147561163 147561163 A C POU4F2 Missense_Mutation p.M145L 0.23 deleterious_low_confidence(0) benign(0.267) TCGA-85-8584-01 4 159790339 159790339 G T FNIP2 Nonsense_Mutation p.E851* 0.21 TCGA-85-8584-01 4 16020117 16020117 C T PROM1 Silent p.L277L 0.12 TCGA-85-8584-01 4 167663201 167663201 C T SPOCK3 Missense_Mutation p.C317Y 0.21 deleterious(0) probably_damaging(1) TCGA-85-8584-01 4 184210631 184210631 C T WWC2 Missense_Mutation p.S1076F 0.31 deleterious(0.04) probably_damaging(0.999) TCGA-85-8584-01 4 184240777 184240777 A T CLDN22 Missense_Mutation p.Y199N 0.14 tolerated(0.07) possibly_damaging(0.617) TCGA-85-8584-01 4 187629187 187629187 G C FAT1 Missense_Mutation p.L599V 0.17 probably_damaging(0.996) TCGA-85-8584-01 4 2306480 2306480 A C ZFYVE28 Silent p.S529S 0.13 TCGA-85-8584-01 4 26431565 26431565 G T RBPJ Missense_Mutation p.G325C 0.14 deleterious(0) probably_damaging(0.997) TCGA-85-8584-01 4 55958808 55958808 G C KDR Silent p.G1015G 0.23 TCGA-85-8584-01 4 56818405 56818405 T C CEP135 Missense_Mutation p.F37L 0.18 deleterious(0) probably_damaging(0.965) TCGA-85-8584-01 4 6303591 6303591 G T WFS1 Missense_Mutation p.C690F 0.22 deleterious(0.02) probably_damaging(1) TCGA-85-8584-01 4 68708329 68708329 G T TMPRSS11D Missense_Mutation p.F88L 0.21 deleterious(0.04) benign(0.035) TCGA-85-8584-01 4 69101892 69101892 G T TMPRSS11B Missense_Mutation p.L73I 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-85-8584-01 4 71275362 71275362 A G PROL1 Missense_Mutation p.H106R 0.15 tolerated_low_confidence(0.2) benign(0.402) TCGA-85-8584-01 4 71509157 71509157 G A ENAM Missense_Mutation p.G672S 0.14 deleterious(0.04) possibly_damaging(0.523) TCGA-85-8584-01 4 78081950 78081950 A G CCNG2 Missense_Mutation p.N118S 0.23 tolerated(0.08) possibly_damaging(0.474) TCGA-85-8584-01 5 101834366 101834366 G T SLCO6A1 Missense_Mutation p.F61L 0.14 tolerated(0.33) benign(0.008) TCGA-85-8584-01 5 115351418 115351418 C A AQPEP Silent p.V904V 0.27 TCGA-85-8584-01 5 118469212 118469212 A G DMXL1 Silent p.P531P 0.14 TCGA-85-8584-01 5 133295220 133295220 C A C5orf15 Missense_Mutation p.A211S 0.16 deleterious(0) probably_damaging(0.993) TCGA-85-8584-01 5 133451507 133451507 C G TCF7 Intron 0.35 TCGA-85-8584-01 5 134870747 134870747 G T NEUROG1 Missense_Mutation p.P212T 0.20 tolerated(0.09) benign(0.001) TCGA-85-8584-01 5 139266996 139266996 G T NRG2 Silent p.S267S 0.17 TCGA-85-8584-01 5 140189056 140189056 G T PCDHA4 Nonsense_Mutation p.E762* 0.15 TCGA-85-8584-01 5 140306962 140306962 G T PCDHAC1 Missense_Mutation p.S162I 0.14 tolerated(0.2) benign(0.073) TCGA-85-8584-01 5 140730553 140730553 G A PCDHGB1 Silent p.E242E 0.14 TCGA-85-8584-01 5 140801649 140801649 G T PCDHGA11 Missense_Mutation p.M285I 0.17 tolerated_low_confidence(1) benign(0.005) TCGA-85-8584-01 5 146795321 146795321 G T DPYSL3 Missense_Mutation p.H257Q 0.16 tolerated(0.64) benign(0.198) TCGA-85-8584-01 5 172396577 172396577 G T RPL26L1 3'UTR 0.08 TCGA-85-8584-01 5 23521174 23521174 G T PRDM9 Nonsense_Mutation p.E132* 0.16 TCGA-85-8584-01 5 32415181 32415186 GAGAAA - ZFR In_Frame_Del p.F225_S226del 0.13 TCGA-85-8584-01 5 5186343 5186343 C A ADAMTS16 Nonsense_Mutation p.Y314* 0.38 TCGA-85-8584-01 5 52367849 52367849 G T ITGA2 Missense_Mutation p.A773S 0.16 tolerated(0.77) benign(0.029) TCGA-85-8584-01 5 55407157 55407157 C G ANKRD55 Missense_Mutation p.S473T 0.18 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-85-8584-01 5 72874845 72874845 A T UTP15 Missense_Mutation p.T384S 0.17 tolerated(0.8) benign(0.001) TCGA-85-8584-01 5 78411621 78411621 T A BHMT Missense_Mutation p.I22N 0.20 deleterious(0) possibly_damaging(0.836) TCGA-85-8584-01 5 80256602 80256602 G C RASGRF2 Silent p.L15L 0.16 TCGA-85-8584-01 5 82849272 82849272 C A VCAN Silent p.R3195R 0.12 TCGA-85-8584-01 5 94938952 94938952 G T ARSK Missense_Mutation p.D445Y 0.19 deleterious(0) probably_damaging(0.996) TCGA-85-8584-01 6 10530033 10530033 G A GCNT2 Missense_Mutation p.D297N 0.13 deleterious(0.01) probably_damaging(0.991) TCGA-85-8584-01 6 124604150 124604150 G T NKAIN2 Splice_Site p.X19_splice 0.21 TCGA-85-8584-01 6 124604151 124604151 G T NKAIN2 Missense_Mutation p.V19F 0.21 deleterious(0) benign(0.255) TCGA-85-8584-01 6 142691641 142691641 T G GPR126 Silent p.S260S 0.42 TCGA-85-8584-01 6 150321232 150321232 C T RAET1K RNA 0.26 TCGA-85-8584-01 6 165715365 165715365 A G C6orf118 Missense_Mutation p.V149A 0.31 tolerated(0.74) benign(0.066) TCGA-85-8584-01 6 167550244 167550244 G A CCR6 Missense_Mutation p.V176I 0.35 tolerated(1) benign(0.004) TCGA-85-8584-01 6 22569821 22569821 T A HDGFL1 Missense_Mutation p.M6K 0.15 tolerated(0.75) benign(0.005) TCGA-85-8584-01 6 25670297 25670297 G A SCGN Missense_Mutation p.G155D 0.13 tolerated(1) benign(0.001) TCGA-85-8584-01 6 26021096 26021096 C G HIST1H3A Missense_Mutation p.L127V 0.12 deleterious_low_confidence(0.02) probably_damaging(0.983) TCGA-85-8584-01 6 28195006 28195006 G T ZSCAN9 Missense_Mutation p.R48S 0.23 deleterious(0.04) probably_damaging(0.998) TCGA-85-8584-01 6 28212820 28212820 G T ZKSCAN4 3'UTR 0.17 TCGA-85-8584-01 6 29408402 29408402 C T OR10C1 Missense_Mutation p.L204F 0.25 tolerated(0.24) benign(0.028) TCGA-85-8584-01 6 29640913 29640913 T A ZFP57 Silent p.P325P 0.13 TCGA-85-8584-01 6 31671082 31671082 T A ABHD16A 5'UTR 0.32 TCGA-85-8584-01 6 32018010 32018010 C - TNXB 5'Flank 0.12 TCGA-85-8584-01 6 32047034 32047034 G T RNA5SP206 5'Flank 0.35 TCGA-85-8584-01 6 35745273 35745274 - CG CLPSL2 Frame_Shift_Ins p.S42Afs*22 0.09 TCGA-85-8584-01 6 47686140 47686140 C A GPR115 Missense_Mutation p.P684T 0.29 deleterious(0.01) possibly_damaging(0.783) TCGA-85-8584-01 6 49754750 49754750 G C PGK2 Missense_Mutation p.L51V 0.34 deleterious(0.05) benign(0.367) TCGA-85-8584-01 6 51875132 51875132 C A PKHD1 Missense_Mutation p.R1909L 0.38 tolerated(0.21) benign(0.106) TCGA-85-8584-01 6 57512591 57512591 C T PRIM2 3'UTR 0.07 TCGA-85-8584-01 7 103474090 103474090 G T RELN Missense_Mutation p.Q123K 0.21 tolerated(0.06) benign(0.403) TCGA-85-8584-01 7 106508280 106508280 G T PIK3CG Nonsense_Mutation p.G92* 0.17 TCGA-85-8584-01 7 117232500 117232500 C T CFTR Missense_Mutation p.T760M 0.15 tolerated(0.29) benign(0.009) TCGA-85-8584-01 7 124404475 124404475 C G GPR37 Missense_Mutation p.A186P 0.17 tolerated(0.11) benign(0.143) TCGA-85-8584-01 7 127892182 127892182 A T LEP Silent p.T37T 0.22 TCGA-85-8584-01 7 146805319 146805319 G T CNTNAP2 Missense_Mutation p.V211F 0.12 deleterious(0.01) probably_damaging(0.923) TCGA-85-8584-01 7 150163810 150163810 G A GIMAP8 Missense_Mutation p.M8I 0.17 tolerated(0.58) benign(0.003) TCGA-85-8584-01 7 19184524 19184524 G T FERD3L Silent p.T154T 0.13 TCGA-85-8584-01 7 21695477 21695477 G A DNAH11 Missense_Mutation p.D1663N 0.27 probably_damaging(1) TCGA-85-8584-01 7 23728969 23728969 G T FAM221A Missense_Mutation p.Q107H 0.19 tolerated(0.13) benign(0.013) TCGA-85-8584-01 7 2952950 2952950 C T CARD11 Missense_Mutation p.G997D 0.16 tolerated(0.13) probably_damaging(0.912) TCGA-85-8584-01 7 47408797 47408797 C A TNS3 Missense_Mutation p.M482I 0.14 tolerated(0.47) benign(0.016) TCGA-85-8584-01 7 53103730 53103730 G T POM121L12 Silent p.G122G 0.08 TCGA-85-8584-01 7 73122992 73122992 G A STX1A Silent p.D45D 0.19 TCGA-85-8584-01 7 84694840 84694840 A T SEMA3D Silent p.S206S 0.15 TCGA-85-8584-01 7 92825187 92825187 C T HEPACAM2 Missense_Mutation p.G410E 0.16 deleterious(0) probably_damaging(1) TCGA-85-8584-01 8 104897656 104897656 C A RIMS2 Silent p.R277R 0.10 TCGA-85-8584-01 8 104898397 104898397 G T RIMS2 Nonsense_Mutation p.E524* 0.26 TCGA-85-8584-01 8 106813969 106813969 T A ZFPM2 Nonsense_Mutation p.C553* 0.24 TCGA-85-8584-01 8 106815031 106815031 C A ZFPM2 Silent p.V907V 0.29 TCGA-85-8584-01 8 113308073 113308073 G T CSMD3 Missense_Mutation p.P2868Q 0.13 deleterious(0) probably_damaging(0.997) TCGA-85-8584-01 8 113347652 113347652 G T CSMD3 Silent p.T2357T 0.32 TCGA-85-8584-01 8 113395871 113395871 T A CSMD3 Missense_Mutation p.T1986S 0.36 deleterious(0.01) possibly_damaging(0.81) TCGA-85-8584-01 8 113418866 113418866 G A CSMD3 Missense_Mutation p.S1899L 0.14 tolerated(0.55) benign(0.001) TCGA-85-8584-01 8 120435430 120435430 C A NOV 3'UTR 0.31 TCGA-85-8584-01 8 3000163 3000163 T A CSMD1 Missense_Mutation p.E2022V 0.23 probably_damaging(0.999) TCGA-85-8584-01 8 39496043 39496043 G T ADAM18 Missense_Mutation p.S296I 0.21 deleterious(0.01) probably_damaging(0.938) TCGA-85-8584-01 8 41542136 41542136 C T ANK1 Missense_Mutation p.R1529Q 0.15 tolerated(0.46) benign(0.031) TCGA-85-8584-01 8 57354175 57354175 A T PENK Missense_Mutation p.S154T 0.32 tolerated(0.21) benign(0.04) TCGA-85-8584-01 8 82443478 82443478 C A FABP12 Missense_Mutation p.G25C 0.21 deleterious(0) probably_damaging(1) TCGA-85-8584-01 8 88884934 88884934 C T DCAF4L2 3'UTR 0.40 TCGA-85-8584-01 8 94798575 94798575 G T TMEM67 Splice_Site p.X471_splice 0.32 TCGA-85-8584-01 9 111782785 111782785 C A TMEM245 Silent p.R865R 0.19 TCGA-85-8584-01 9 112705147 112705147 C T PALM2 Silent p.H226H 0.15 TCGA-85-8584-01 9 113149571 113149571 A C SVEP1 Missense_Mutation p.C3352G 0.13 probably_damaging(1) TCGA-85-8584-01 9 129930966 129930966 A T RALGPS1 Missense_Mutation p.T253S 0.20 tolerated(0.85) benign(0) TCGA-85-8584-01 9 131038438 131038438 G T SWI5 Missense_Mutation p.G5V 0.14 deleterious_low_confidence(0.01) probably_damaging(0.953) TCGA-85-8584-01 9 136221712 136221712 G C SURF1 Missense_Mutation p.I69M 0.20 deleterious(0) possibly_damaging(0.85) TCGA-85-8584-01 9 138678234 138678234 G T KCNT1 Missense_Mutation p.Q1123H 0.25 tolerated(0.71) benign(0) TCGA-85-8584-01 9 139262229 139262229 C A CARD9 Nonsense_Mutation p.E377* 0.26 TCGA-85-8584-01 9 18929055 18929055 T A FAM154A Splice_Site p.X141_splice 0.42 TCGA-85-8584-01 9 35108108 35108108 G - FAM214B Frame_Shift_Del p.P55Lfs*12 0.30 TCGA-85-8584-01 9 86518488 86518488 G A KIF27 Silent p.I315I 0.21 TCGA-85-8584-01 9 95599864 95599864 C A ANKRD19P RNA 0.10 TCGA-85-8584-01 X 101615501 101615501 G C NXF2B 3'UTR 0.14 TCGA-85-8584-01 X 12728572 12728572 G T FRMPD4 Missense_Mutation p.A509S 0.35 tolerated(0.08) probably_damaging(0.999) TCGA-85-8584-01 X 1407431 1407431 C G CSF2RA Missense_Mutation p.S80W 0.14 tolerated(0.2) benign(0.087) TCGA-85-8584-01 X 155232550 155232550 C T IL9R Intron 0.12 TCGA-85-8584-01 X 27766070 27766070 C A DCAF8L2 Missense_Mutation p.P353Q 0.47 deleterious(0) probably_damaging(0.988) TCGA-85-8584-01 X 84634403 84634403 G T POF1B Silent p.L19L 0.44 TCGA-85-8664-01 10 101640056 101640056 C A DNMBP Missense_Mutation p.D1354Y 0.23 deleterious(0) probably_damaging(1) TCGA-85-8664-01 10 108339199 108339199 C A SORCS1 Missense_Mutation p.G1100V 0.16 deleterious(0.03) possibly_damaging(0.878) TCGA-85-8664-01 10 118460475 118460475 C A HSPA12A Missense_Mutation p.K140N 0.23 deleterious(0) probably_damaging(0.976) TCGA-85-8664-01 10 129875918 129875918 G T PTPRE Missense_Mutation p.R588L 0.30 deleterious(0) probably_damaging(1) TCGA-85-8664-01 10 18689897 18689897 C G CACNB2 Intron 0.28 TCGA-85-8664-01 10 28023402 28023402 T A MKX Missense_Mutation p.N274I 0.10 tolerated(0.07) possibly_damaging(0.526) TCGA-85-8664-01 10 28229533 28229533 G A ARMC4 Silent p.L649L 0.46 TCGA-85-8664-01 10 50827892 50827892 G T CHAT Missense_Mutation p.G170V 0.55 tolerated(0.11) probably_damaging(0.958) TCGA-85-8664-01 10 58120992 58120992 C A ZWINT Missense_Mutation p.E2D 0.44 tolerated_low_confidence(0.17) unknown(0) TCGA-85-8664-01 10 73765672 73765672 C T CHST3 Silent p.Y24Y 0.21 TCGA-85-8664-01 10 81316959 81316959 T C SFTPA2 3'UTR 0.37 TCGA-85-8664-01 10 81373709 81373709 G T SFTPA1 Missense_Mutation p.G211V 0.20 deleterious(0) probably_damaging(0.952) TCGA-85-8664-01 10 83635526 83635526 G C NRG3 Missense_Mutation p.G144R 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-85-8664-01 11 116655099 116655099 T A ZNF259 Missense_Mutation p.N296Y 0.28 deleterious(0) probably_damaging(0.997) TCGA-85-8664-01 11 117375685 117375685 C T DSCAML1 Silent p.S772S 0.32 TCGA-85-8664-01 11 123464863 123464863 G T GRAMD1B Missense_Mutation p.R110L 0.33 deleterious(0) probably_damaging(0.997) TCGA-85-8664-01 11 123814242 123814242 A T OR6T1 Missense_Mutation p.Y102N 0.33 deleterious(0) possibly_damaging(0.495) TCGA-85-8664-01 11 123900927 123900927 G T OR10G8 Missense_Mutation p.V200L 0.35 tolerated(0.07) benign(0.077) TCGA-85-8664-01 11 14535183 14535183 C T PSMA1 Missense_Mutation p.M165I 0.32 tolerated(0.17) benign(0.147) TCGA-85-8664-01 11 55110838 55110838 C T OR4A16 Silent p.G54G 0.42 TCGA-85-8664-01 11 55861503 55861503 C A OR8I2 Nonsense_Mutation p.C240* 0.48 TCGA-85-8664-01 11 57177551 57177551 C A SLC43A3 Silent p.S368S 0.59 TCGA-85-8664-01 11 57995516 57995516 G A OR10Q1 Nonsense_Mutation p.Q278* 0.51 TCGA-85-8664-01 11 59245819 59245819 T G OR4D10 Missense_Mutation p.V306G 0.26 tolerated(0.58) benign(0) TCGA-85-8664-01 11 64004929 64004929 G T VEGFB Missense_Mutation p.V150F 0.12 deleterious(0.03) benign(0.216) TCGA-85-8664-01 11 64603900 64603900 C A CDC42BPG Missense_Mutation p.R496L 0.70 deleterious(0.02) benign(0.039) TCGA-85-8664-01 11 6502738 6502738 G T TIMM10B 5'UTR 0.25 TCGA-85-8664-01 11 65650706 65650706 C G CTSW Missense_Mutation p.I277M 0.23 tolerated(0.11) possibly_damaging(0.588) TCGA-85-8664-01 11 65651186 65651186 C T CTSW 3'UTR 0.37 TCGA-85-8664-01 11 6643284 6643284 A G DCHS1 Missense_Mutation p.V3208A 0.20 deleterious(0) probably_damaging(0.913) TCGA-85-8664-01 11 67376945 67376945 G T NDUFV1 Missense_Mutation p.A117S 0.15 deleterious_low_confidence(0.02) probably_damaging(0.92) TCGA-85-8664-01 11 82880572 82880572 G T PCF11 Missense_Mutation p.R1065S 0.43 tolerated(0.76) benign(0.3) TCGA-85-8664-01 11 93826708 93826708 G C HEPHL1 Missense_Mutation p.G779A 0.27 deleterious(0) probably_damaging(0.999) TCGA-85-8664-01 12 108589596 108589596 G T WSCD2 5'UTR 0.39 TCGA-85-8664-01 12 112220980 112220980 G T RP11-162P23.2 Missense_Mutation p.V77L 0.37 deleterious(0) probably_damaging(0.993) TCGA-85-8664-01 12 117710322 117710322 G A NOS1 Silent p.L569L 0.43 TCGA-85-8664-01 12 12037448 12037448 G - ETV6 Frame_Shift_Del p.E361Rfs*10 0.21 TCGA-85-8664-01 12 125900096 125900096 G A TMEM132B Missense_Mutation p.V322M 0.39 deleterious(0.03) possibly_damaging(0.849) TCGA-85-8664-01 12 129569059 129569059 G T TMEM132D Silent p.P544P 0.30 TCGA-85-8664-01 12 130922923 130922923 G A RIMBP2 Missense_Mutation p.A531V 0.40 deleterious(0.02) benign(0.022) TCGA-85-8664-01 12 13906748 13906748 G T GRIN2B Silent p.I171I 0.27 TCGA-85-8664-01 12 1965245 1965245 G C CACNA2D4 Missense_Mutation p.D695E 0.44 tolerated(0.79) benign(0.001) TCGA-85-8664-01 12 46285874 46285874 T G ARID2 Silent p.S1714S 0.46 TCGA-85-8664-01 12 46320548 46320548 C A SCAF11 Missense_Mutation p.R979L 0.31 deleterious(0) probably_damaging(0.995) TCGA-85-8664-01 12 48240158 48240158 C A VDR Missense_Mutation p.E378D 0.31 deleterious(0.02) probably_damaging(0.977) TCGA-85-8664-01 12 53804848 53804848 A T SP1 Missense_Mutation p.S728C 0.35 deleterious(0.01) benign(0.265) TCGA-85-8664-01 12 55688901 55688901 C T OR6C6 Missense_Mutation p.G39E 0.48 deleterious_low_confidence(0.01) benign(0.157) TCGA-85-8664-01 12 57435049 57435049 C G MYO1A Silent p.V396V 0.48 TCGA-85-8664-01 12 69742272 69742272 A G LYZ Silent p.R28R 0.56 TCGA-85-8664-01 12 78511816 78511816 G T NAV3 Missense_Mutation p.D927Y 0.28 deleterious(0) possibly_damaging(0.809) TCGA-85-8664-01 12 85449346 85449346 T A LRRIQ1 Missense_Mutation p.L259I 0.40 deleterious(0.03) benign(0.4) TCGA-85-8664-01 13 102051453 102051453 T A NALCN Missense_Mutation p.R9W 0.63 deleterious(0.02) probably_damaging(0.972) TCGA-85-8664-01 13 102367926 102367926 T C ITGBL1 Silent p.C469C 0.69 TCGA-85-8664-01 13 113751032 113751032 C T MCF2L Intron 0.47 TCGA-85-8664-01 13 46679123 46679123 C A CPB2 Missense_Mutation p.V8F 0.28 tolerated(0.5) benign(0.002) TCGA-85-8664-01 14 102606397 102606406 ACCCTGTCCG - WDR20 Frame_Shift_Del p.N46Tfs*5 0.34 TCGA-85-8664-01 14 102805270 102805270 A G ZNF839 Missense_Mutation p.S593G 0.31 tolerated(1) benign(0.001) TCGA-85-8664-01 14 104038099 104038099 A C RP11-73M18.2 Missense_Mutation p.Q101P 0.31 deleterious_low_confidence(0) benign(0.036) TCGA-85-8664-01 14 106173646 106173646 C A IGHA1 Missense_Mutation p.K307N 0.17 tolerated(0.3) benign(0.012) TCGA-85-8664-01 14 23495139 23495139 G A PSMB5 3'UTR 0.57 TCGA-85-8664-01 14 30046500 30046500 G C PRKD1 Missense_Mutation p.P895A 0.44 tolerated_low_confidence(0.72) benign(0.001) TCGA-85-8664-01 14 31626459 31626459 G C HECTD1 Missense_Mutation p.A558G 0.15 tolerated(0.34) benign(0.029) TCGA-85-8664-01 14 60903498 60903498 A C C14orf39 3'UTR 0.54 TCGA-85-8664-01 14 88477886 88477886 C G GPR65 Missense_Mutation p.T232R 0.17 deleterious(0.01) probably_damaging(0.954) TCGA-85-8664-01 14 93170603 93170603 T A LGMN 3'UTR 0.42 TCGA-85-8664-01 14 94004381 94004381 C T UNC79 Missense_Mutation p.A213V 0.47 tolerated(0.13) probably_damaging(0.972) TCGA-85-8664-01 15 100331287 100331287 T A AC090825.1 5'Flank 0.34 TCGA-85-8664-01 15 23311394 23311394 C A HERC2P2 RNA 0.23 TCGA-85-8664-01 15 31332543 31332543 G T TRPM1 Missense_Mutation p.F715L 0.32 deleterious(0.04) benign(0.044) TCGA-85-8664-01 15 37390368 37390368 G A MEIS2 Silent p.D15D 0.63 TCGA-85-8664-01 15 44884628 44884628 C A SPG11 Silent p.P1548P 0.47 TCGA-85-8664-01 15 72958395 72958395 C - GOLGA6B Frame_Shift_Del p.Q628Rfs*29 0.23 TCGA-85-8664-01 15 73528700 73528700 C T NEO1 Missense_Mutation p.T435M 0.07 tolerated(0.07) benign(0.173) TCGA-85-8664-01 15 77472602 77472602 C G PEAK1 Missense_Mutation p.G556A 0.17 tolerated(0.14) possibly_damaging(0.735) TCGA-85-8664-01 15 78211197 78211197 C A RP11-114H24.7 Intron 0.64 TCGA-85-8664-01 15 87097663 87097663 A G AGBL1 Silent p.K917K 0.22 TCGA-85-8664-01 16 1370570 1370570 A G UBE2I Intron 0.70 TCGA-85-8664-01 16 1720785 1720785 C T CRAMP1L Missense_Mutation p.S1207F 0.67 deleterious(0) probably_damaging(1) TCGA-85-8664-01 16 24166113 24166113 C A PRKCB Silent p.R392R 0.54 TCGA-85-8664-01 16 25228530 25228530 T G AQP8 Missense_Mutation p.C8W 0.65 deleterious_low_confidence(0.01) possibly_damaging(0.619) TCGA-85-8664-01 16 32264808 32264808 C A TP53TG3D Missense_Mutation p.P45H 0.40 deleterious_low_confidence(0.04) probably_damaging(0.95) TCGA-85-8664-01 16 32893968 32893968 C A RP11-989E6.3 5'Flank 0.12 TCGA-85-8664-01 16 55719124 55719124 G A SLC6A2 Silent p.L238L 0.30 TCGA-85-8664-01 16 55735831 55735831 C A SLC6A2 Missense_Mutation p.D605E 0.17 tolerated(1) benign(0) TCGA-85-8664-01 16 68112360 68112360 C G DUS2 Missense_Mutation p.L395V 0.15 tolerated(0.32) benign(0.001) TCGA-85-8664-01 16 70190674 70190674 C A PDPR Silent p.I844I 0.11 TCGA-85-8664-01 16 83998893 83998894 - C OSGIN1 Frame_Shift_Ins p.R240Pfs*29 0.23 TCGA-85-8664-01 16 84135266 84135266 C G MBTPS1 Silent p.L41L 0.24 TCGA-85-8664-01 17 25746795 25746795 G T TBC1D3P5 Splice_Site 0.14 TCGA-85-8664-01 17 25746796 25746796 G T TBC1D3P5 Intron 0.14 TCGA-85-8664-01 17 25748679 25748679 A T TBC1D3P5 RNA 0.28 TCGA-85-8664-01 17 33348672 33348672 C T RFFL Silent p.K103K 0.17 TCGA-85-8664-01 17 33445598 33445598 G A RAD51D Intron 0.14 TCGA-85-8664-01 17 33772364 33772364 C A SLFN13 Missense_Mutation p.W112C 0.17 deleterious(0) probably_damaging(0.982) TCGA-85-8664-01 17 51901250 51901250 C G KIF2B Missense_Mutation p.P286A 0.10 deleterious(0.03) probably_damaging(1) TCGA-85-8664-01 17 51902381 51902381 C G KIF2B Missense_Mutation p.L663V 0.62 deleterious(0) benign(0.024) TCGA-85-8664-01 17 65353531 65353531 G A PSMD12 Missense_Mutation p.S62L 0.13 deleterious(0) possibly_damaging(0.626) TCGA-85-8664-01 17 65688982 65688982 C T PITPNC1 Missense_Mutation p.P326L 0.31 deleterious_low_confidence(0.01) benign(0.001) TCGA-85-8664-01 17 73747072 73747072 C T ITGB4 Missense_Mutation p.R1225C 0.14 deleterious(0) probably_damaging(0.999) TCGA-85-8664-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.84 deleterious(0) probably_damaging(0.997) TCGA-85-8664-01 17 79176106 79176106 C A AZI1 Missense_Mutation p.R241L 0.20 tolerated(0.14) benign(0.186) TCGA-85-8664-01 18 13825818 13825818 G A MC5R Silent p.E18E 0.21 TCGA-85-8664-01 18 21712510 21712510 C T TTC39C Missense_Mutation p.A575V 0.25 tolerated(0.05) possibly_damaging(0.706) TCGA-85-8664-01 18 43445649 43445649 T G EPG5 Missense_Mutation p.I2233L 0.28 deleterious(0.04) benign(0.009) TCGA-85-8664-01 18 48190741 48190741 A G MAPK4 Missense_Mutation p.K138R 0.72 deleterious(0) probably_damaging(0.99) TCGA-85-8664-01 18 70451054 70451054 C A NETO1 Missense_Mutation p.V243L 0.25 tolerated(0.14) benign(0.266) TCGA-85-8664-01 19 11289318 11289318 C G KANK2 Missense_Mutation p.S443T 0.24 tolerated(0.59) benign(0.001) TCGA-85-8664-01 19 12090117 12090117 C G ZNF763 3'UTR 0.33 TCGA-85-8664-01 19 1399820 1399820 C T GAMT Missense_Mutation p.R100Q 0.33 tolerated(1) benign(0) TCGA-85-8664-01 19 19790507 19790507 C T ZNF101 Missense_Mutation p.P237S 0.24 tolerated(0.55) benign(0.023) TCGA-85-8664-01 19 22018893 22018893 G A ZNF43 5'UTR 0.27 TCGA-85-8664-01 19 2252486 2252486 G T JSRP1 Missense_Mutation p.R280S 0.66 deleterious(0.01) possibly_damaging(0.907) TCGA-85-8664-01 19 30193885 30193885 C A C19orf12 Splice_Site p.X65_splice 0.34 TCGA-85-8664-01 19 38985015 38985015 C A RYR1 Missense_Mutation p.H2100N 0.52 benign(0.019) TCGA-85-8664-01 19 39962095 39962095 C A SUPT5H Missense_Mutation p.N592K 0.48 deleterious(0.02) possibly_damaging(0.882) TCGA-85-8664-01 19 42729435 42729435 A T ZNF526 Missense_Mutation p.T294S 0.77 tolerated(0.24) benign(0) TCGA-85-8664-01 19 46388285 46388285 G C IRF2BP1 Missense_Mutation p.H250D 0.55 deleterious(0.01) possibly_damaging(0.507) TCGA-85-8664-01 19 49700060 49700060 C G TRPM4 Silent p.L858L 0.13 TCGA-85-8664-01 19 50868821 50868821 C - NAPSA Frame_Shift_Del p.E20Sfs*7 0.34 TCGA-85-8664-01 19 51918508 51918508 G A SIGLEC10 Silent p.H419H 0.43 TCGA-85-8664-01 19 53384690 53384691 - C ZNF320 Frame_Shift_Ins p.A230Gfs*8 0.30 TCGA-85-8664-01 19 53995200 53995200 C G ZNF813 Missense_Mutation p.L572V 0.26 tolerated(0.24) benign(0.158) TCGA-85-8664-01 19 55718247 55718247 A T PTPRH Missense_Mutation p.D54E 0.36 benign(0.017) TCGA-85-8664-01 19 55742811 55742811 T C PPP6R1 Missense_Mutation p.H809R 0.45 tolerated_low_confidence(1) benign(0.001) TCGA-85-8664-01 19 56162825 56162825 C T CCDC106 Missense_Mutation p.R164C 0.17 tolerated(0.08) possibly_damaging(0.862) TCGA-85-8664-01 1 10132226 10132226 C G UBE4B Silent p.L55L 0.17 TCGA-85-8664-01 1 11174941 11174941 C A MTOR Missense_Mutation p.A2365S 0.25 deleterious(0) probably_damaging(0.949) TCGA-85-8664-01 1 114381204 114381204 A T PTPN22 Silent p.T318T 0.59 TCGA-85-8664-01 1 119927402 119927402 C G HAO2 Missense_Mutation p.A96G 0.29 deleterious(0.02) possibly_damaging(0.786) TCGA-85-8664-01 1 149905301 149905301 G - MTMR11 Frame_Shift_Del p.P328Lfs*5 0.18 TCGA-85-8664-01 1 152085365 152085365 A G TCHH Silent p.L110L 0.33 TCGA-85-8664-01 1 152127441 152127441 G A RPTN Nonsense_Mutation p.Q712* 0.36 TCGA-85-8664-01 1 152278408 152278408 G T FLG Nonsense_Mutation p.S2985* 0.20 TCGA-85-8664-01 1 152278409 152278409 A T FLG Missense_Mutation p.S2985T 0.20 benign(0.038) TCGA-85-8664-01 1 153654291 153654291 C A NPR1 Silent p.R383R 0.38 TCGA-85-8664-01 1 155448114 155448114 C T ASH1L Missense_Mutation p.R1516H 0.07 deleterious_low_confidence(0.03) probably_damaging(0.985) TCGA-85-8664-01 1 176740311 176740311 C A PAPPA2 Silent p.V1570V 0.51 TCGA-85-8664-01 1 197021898 197021898 C A F13B Missense_Mutation p.G474V 0.29 tolerated(0.16) probably_damaging(0.932) TCGA-85-8664-01 1 197021899 197021899 C A F13B Missense_Mutation p.G474W 0.30 tolerated(0.05) probably_damaging(0.998) TCGA-85-8664-01 1 237941985 237941985 A T RYR2 Missense_Mutation p.Q3932L 0.28 probably_damaging(0.975) TCGA-85-8664-01 1 243663152 243663152 T G SDCCAG8 3'UTR 0.53 TCGA-85-8664-01 1 248366431 248366431 G T OR2M3 Missense_Mutation p.S21I 0.35 deleterious(0.02) possibly_damaging(0.707) TCGA-85-8664-01 1 38227687 38227687 C A EPHA10 Silent p.L80L 0.22 TCGA-85-8664-01 1 45800172 45800172 C A MUTYH Missense_Mutation p.R16S 0.20 deleterious_low_confidence(0.01) benign(0.103) TCGA-85-8664-01 1 45800173 45800173 C A MUTYH Missense_Mutation p.R16M 0.20 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-85-8664-01 1 51253794 51253794 G A FAF1 Missense_Mutation p.S82L 0.26 tolerated(0.35) benign(0.004) TCGA-85-8664-01 1 55638135 55638135 T C USP24 Missense_Mutation p.N206S 0.24 tolerated(0.1) benign(0.1) TCGA-85-8664-01 1 74737372 74737372 A G FPGT-TNNI3K Missense_Mutation p.T256A 0.18 tolerated(0.92) benign(0.004) TCGA-85-8664-01 1 75037263 75037263 G T C1orf173 Silent p.S1377S 0.12 TCGA-85-8664-01 1 76349386 76349386 A C MSH4 Missense_Mutation p.I663L 0.14 deleterious(0.01) benign(0.089) TCGA-85-8664-01 1 85031649 85031649 C A CTBS Missense_Mutation p.C191F 0.54 tolerated(0.09) possibly_damaging(0.838) TCGA-85-8664-01 1 85392299 85392299 G C MCOLN2 3'UTR 0.55 TCGA-85-8664-01 1 93621875 93621875 C T TMED5 Missense_Mutation p.M151I 0.19 tolerated(0.52) benign(0.017) TCGA-85-8664-01 20 44676666 44676666 G A SLC12A5 Missense_Mutation p.A675T 0.09 tolerated(0.09) probably_damaging(0.982) TCGA-85-8664-01 20 52198301 52198301 G T ZNF217 Missense_Mutation p.H355Q 0.69 tolerated(0.34) benign(0.073) TCGA-85-8664-01 20 57429130 57429130 G A GNAS Silent p.A270A 0.69 TCGA-85-8664-01 21 11058308 11058308 T C BAGE2 RNA 0.04 TCGA-85-8664-01 21 28296544 28296544 G C ADAMTS5 Missense_Mutation p.T874S 0.60 tolerated(0.75) benign(0.001) TCGA-85-8664-01 21 33032198 33032198 C T SOD1 Intron 0.75 TCGA-85-8664-01 22 22930867 22930867 C T IGLV2-33 Missense_Mutation p.S21F 0.45 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-85-8664-01 22 23263606 23263606 C A IGLJ7 Silent p.L15L 0.27 TCGA-85-8664-01 22 24515353 24515353 G A CABIN1 Silent p.L1440L 0.15 TCGA-85-8664-01 22 29885313 29885313 C A NEFH Missense_Mutation p.P562T 0.53 tolerated(0.37) unknown(0) TCGA-85-8664-01 22 32894270 32894270 C T FBXO7 Missense_Mutation p.P441L 0.28 deleterious(0) probably_damaging(0.964) TCGA-85-8664-01 22 35717991 35717991 G T TOM1 Silent p.V59V 0.67 TCGA-85-8664-01 2 10559959 10559959 G T HPCAL1 Nonsense_Mutation p.E26* 0.28 TCGA-85-8664-01 2 106690462 106690462 G C C2orf40 Missense_Mutation p.W83S 0.33 deleterious(0) probably_damaging(0.998) TCGA-85-8664-01 2 11337715 11337715 A C ROCK2 Silent p.S1072S 0.26 TCGA-85-8664-01 2 113588059 113588059 G A IL1B Missense_Mutation p.S230F 0.64 deleterious(0) probably_damaging(1) TCGA-85-8664-01 2 11750917 11750917 A T GREB1 Missense_Mutation p.T924S 0.37 tolerated(0.47) probably_damaging(0.967) TCGA-85-8664-01 2 130833064 130833064 C A POTEF Nonsense_Mutation p.E661* 0.61 TCGA-85-8664-01 2 130833065 130833065 C A POTEF Silent p.L660L 0.61 TCGA-85-8664-01 2 185801240 185801240 C A ZNF804A Missense_Mutation p.Q373K 0.61 tolerated(0.08) possibly_damaging(0.9) TCGA-85-8664-01 2 190592658 190592658 T A ANKAR Silent p.A904A 0.67 TCGA-85-8664-01 2 20507816 20507816 T C PUM2 Missense_Mutation p.N269S 0.47 tolerated_low_confidence(0.22) benign(0.011) TCGA-85-8664-01 2 220037224 220037224 G A CNPPD1 3'UTR 0.65 TCGA-85-8664-01 2 240984783 240984783 C A OR6B3 Missense_Mutation p.R236I 0.61 deleterious(0) possibly_damaging(0.866) TCGA-85-8664-01 2 29416033 29416033 C G ALK 3'UTR 0.48 TCGA-85-8664-01 2 36726370 36726370 A T CRIM1 Missense_Mutation p.I461F 0.45 tolerated(0.08) benign(0) TCGA-85-8664-01 2 43452046 43452047 - CAGGAC ZFP36L2 In_Frame_Ins p.S298_C299insWS 0.45 TCGA-85-8664-01 2 45169115 45169115 C - SIX3 5'UTR 0.29 TCGA-85-8664-01 2 45171910 45171910 C G SIX3 3'UTR 0.42 TCGA-85-8664-01 2 48573436 48573436 A T FOXN2 Missense_Mutation p.Y28F 0.50 tolerated(0.48) benign(0.265) TCGA-85-8664-01 2 74042715 74042715 G A C2orf78 Silent p.P455P 0.12 TCGA-85-8664-01 2 77746526 77746526 G T LRRTM4 Silent p.R157R 0.63 TCGA-85-8664-01 2 80529762 80529762 C A LRRTM1 Missense_Mutation p.A395S 0.15 tolerated(0.87) benign(0.002) TCGA-85-8664-01 2 89309561 89309561 C A IGKV1-9 Missense_Mutation p.G90V 0.33 deleterious(0) probably_damaging(0.996) TCGA-85-8664-01 2 95715346 95715346 C T MAL Silent p.T94T 0.11 TCGA-85-8664-01 3 10142986 10142986 G T FANCD2 3'Flank 0.62 TCGA-85-8664-01 3 119132727 119132727 C T ARHGAP31 Silent p.L651L 0.39 TCGA-85-8664-01 3 12571315 12571315 G A TSEN2 Silent p.R397R 0.65 TCGA-85-8664-01 3 137956360 137956360 T C ARMC8 Missense_Mutation p.V227A 0.51 tolerated(0.74) benign(0.005) TCGA-85-8664-01 3 142031534 142031534 G A XRN1 Missense_Mutation p.P1575L 0.38 tolerated_low_confidence(0.06) benign(0.097) TCGA-85-8664-01 3 155232622 155232622 C A PLCH1 Nonsense_Mutation p.E496* 0.58 TCGA-85-8664-01 3 164710103 164710103 G A SI Missense_Mutation p.P1642S 0.05 tolerated(0.34) possibly_damaging(0.672) TCGA-85-8664-01 3 170828502 170828502 C A TNIK Splice_Site p.X762_splice 0.13 TCGA-85-8664-01 3 173998768 173998768 G T NLGN1 Missense_Mutation p.R716L 0.17 deleterious(0.01) probably_damaging(0.986) TCGA-85-8664-01 3 183854726 183854726 G T EIF2B5 Intron 0.56 TCGA-85-8664-01 3 186838978 186838978 G C RPL39L Nonsense_Mutation p.Y37* 0.19 TCGA-85-8664-01 3 195473890 195473890 G T MUC4 3'UTR 0.25 TCGA-85-8664-01 3 19975311 19975311 C G EFHB Missense_Mutation p.S67T 0.50 tolerated_low_confidence(0.2) benign(0.004) TCGA-85-8664-01 3 386364 386364 T A CHL1 Missense_Mutation p.L274M 0.67 deleterious(0) probably_damaging(0.976) TCGA-85-8664-01 3 51264741 51264741 C T DOCK3 Missense_Mutation p.P469S 0.50 tolerated(0.08) probably_damaging(0.909) TCGA-85-8664-01 3 88189961 88189961 G A ZNF654 Missense_Mutation p.V501I 0.13 tolerated(0.32) benign(0.168) TCGA-85-8664-01 3 97869021 97869021 C A OR5H14 Silent p.S264S 0.32 TCGA-85-8664-01 3 98541095 98541095 C G DCBLD2 Missense_Mutation p.L269F 0.28 deleterious(0) possibly_damaging(0.557) TCGA-85-8664-01 4 114279356 114279364 TGCTTCGGA - ANK2 In_Frame_Del p.S3196_A3198del 0.38 TCGA-85-8664-01 4 156634625 156634625 G T GUCY1A3 Missense_Mutation p.V488F 0.65 deleterious(0) probably_damaging(1) TCGA-85-8664-01 4 159162717 159162717 C T TMEM144 Missense_Mutation p.H287Y 0.24 tolerated(0.2) benign(0.001) TCGA-85-8664-01 4 71844847 71844847 G T MOB1B Missense_Mutation p.V143F 0.67 deleterious(0.02) benign(0.03) TCGA-85-8664-01 4 77677993 77677993 G T SHROOM3 Missense_Mutation p.G1701C 0.65 deleterious(0) probably_damaging(1) TCGA-85-8664-01 4 81187888 81187888 C G FGF5 5'UTR 0.60 TCGA-85-8664-01 4 8229256 8229256 G A SH3TC1 Missense_Mutation p.R612Q 0.55 deleterious(0) benign(0.257) TCGA-85-8664-01 5 130841101 130841101 G A RAPGEF6 Nonsense_Mutation p.Q353* 0.60 TCGA-85-8664-01 5 140306376 140306376 G C PCDHAC1 5'Flank 0.50 TCGA-85-8664-01 5 14678789 14678789 G C FAM105B Splice_Site p.X77_splice 0.53 TCGA-85-8664-01 5 15937263 15937263 G A FBXL7 Missense_Mutation p.V482I 0.12 tolerated(1) benign(0.001) TCGA-85-8664-01 5 16936032 16936032 C A MYO10 5'UTR 0.56 TCGA-85-8664-01 5 179407137 179407137 C A RNF130 Missense_Mutation p.G253C 0.67 deleterious(0) probably_damaging(0.999) TCGA-85-8664-01 5 35814671 35814672 - T SPEF2 3'UTR 0.25 TCGA-85-8664-01 5 35871233 35871233 C G IL7R Missense_Mutation p.T152R 0.37 deleterious(0) probably_damaging(0.986) TCGA-85-8664-01 5 79026005 79026005 C A CMYA5 Missense_Mutation p.L473M 0.08 benign(0.189) TCGA-85-8664-01 5 9066632 9066632 T G SEMA5A Missense_Mutation p.K734Q 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-85-8664-01 5 95224604 95224604 C G ELL2 Missense_Mutation p.D632H 0.30 deleterious(0.03) possibly_damaging(0.494) TCGA-85-8664-01 5 96111987 96111987 G A ERAP1 Intron 0.79 TCGA-85-8664-01 5 96112031 96112031 T C ERAP1 Intron 0.73 TCGA-85-8664-01 6 129761984 129761984 G - LAMA2 Frame_Shift_Del p.V2037Lfs*29 0.12 TCGA-85-8664-01 6 131949318 131949318 C A MED23 5'UTR 0.58 TCGA-85-8664-01 6 143080970 143080970 T C HIVEP2 Missense_Mutation p.H2152R 0.21 tolerated(0.26) benign(0.39) TCGA-85-8664-01 6 144808759 144808759 G - UTRN Frame_Shift_Del p.I1302Sfs*5 0.20 TCGA-85-8664-01 6 155561678 155561678 C A TIAM2 Silent p.I1061I 0.60 TCGA-85-8664-01 6 167591968 167591968 C G TCP10L2 Missense_Mutation p.P199A 0.24 tolerated(1) benign(0.017) TCGA-85-8664-01 6 167704928 167704928 G A UNC93A 5'UTR 0.21 TCGA-85-8664-01 6 31110810 31110810 G C CCHCR1 Missense_Mutation p.S807R 0.73 tolerated(0.06) possibly_damaging(0.719) TCGA-85-8664-01 6 31725929 31725929 G A MSH5 Intron 0.76 TCGA-85-8664-01 6 33384380 33384380 C T CUTA 3'UTR 0.69 TCGA-85-8664-01 6 36259166 36259166 C A PNPLA1 Missense_Mutation p.P92Q 0.80 deleterious(0) probably_damaging(0.983) TCGA-85-8664-01 6 38790659 38790659 A C DNAH8 Missense_Mutation p.Y973S 0.66 benign(0.079) TCGA-85-8664-01 6 51524017 51524017 T A PKHD1 Missense_Mutation p.Q3636L 0.62 tolerated(0.13) benign(0.021) TCGA-85-8664-01 6 6167829 6167829 G C F13A1 Missense_Mutation p.I590M 0.07 tolerated(0.07) possibly_damaging(0.777) TCGA-85-8664-01 6 79608013 79608013 G C IRAK1BP1 Missense_Mutation p.E249Q 0.22 deleterious(0) probably_damaging(0.995) TCGA-85-8664-01 6 89388119 89388119 C A RNGTT Missense_Mutation p.G487C 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-85-8664-01 6 90460228 90460228 C T MDN1 Missense_Mutation p.G1084E 0.17 probably_damaging(1) TCGA-85-8664-01 6 96652054 96652054 G T FUT9 Silent p.V341V 0.17 TCGA-85-8664-01 7 100485417 100485417 A G SRRT Missense_Mutation p.T755A 0.46 tolerated(0.47) benign(0.042) TCGA-85-8664-01 7 127894713 127894713 T C LEP Missense_Mutation p.V134A 0.47 tolerated(0.36) benign(0.079) TCGA-85-8664-01 7 131872303 131872303 T C PLXNA4 Missense_Mutation p.I974V 0.23 tolerated(0.11) benign(0.036) TCGA-85-8664-01 7 143140815 143140815 C - TAS2R60 Frame_Shift_Del p.P91Lfs*6 0.36 TCGA-85-8664-01 7 147914385 147914385 G C CNTNAP2 Missense_Mutation p.G1006R 0.21 deleterious(0) probably_damaging(0.969) TCGA-85-8664-01 7 148802424 148802424 C T ZNF425 Missense_Mutation p.R180H 0.10 tolerated(1) benign(0) TCGA-85-8664-01 7 150389665 150389665 G C GIMAP2 Missense_Mutation p.R97S 0.66 tolerated(0.33) benign(0.349) TCGA-85-8664-01 7 154684162 154684162 C T DPP6 Missense_Mutation p.T857I 0.19 tolerated(0.15) benign(0.016) TCGA-85-8664-01 7 24903124 24903124 G A OSBPL3 Silent p.N256N 0.05 TCGA-85-8664-01 7 2834750 2834750 C T GNA12 Missense_Mutation p.D113N 0.18 tolerated(0.21) benign(0.015) TCGA-85-8664-01 7 35712881 35712881 T G HERPUD2 Missense_Mutation p.K52T 0.38 deleterious(0) probably_damaging(0.988) TCGA-85-8664-01 7 39730055 39730055 G T RALA Missense_Mutation p.Q63H 0.44 tolerated(0.36) probably_damaging(0.955) TCGA-85-8664-01 7 45145655 45145655 T C TBRG4 Intron 0.44 TCGA-85-8664-01 7 57528476 57528476 A G ZNF716 Missense_Mutation p.I103M 0.19 tolerated(0.12) probably_damaging(0.997) TCGA-85-8664-01 7 62753158 62753158 G C ZNF733P RNA 0.37 TCGA-85-8664-01 7 92760911 92760911 G T SAMD9L Silent p.S1458S 0.20 TCGA-85-8664-01 7 94540669 94540669 G C PPP1R9A Missense_Mutation p.G415A 0.12 deleterious(0.04) benign(0.137) TCGA-85-8664-01 7 97862923 97862923 C A TECPR1 Missense_Mutation p.E494D 0.44 tolerated(0.09) benign(0.071) TCGA-85-8664-01 7 99367463 99367463 G T CYP3A4 Missense_Mutation p.A150D 0.40 tolerated(0.27) benign(0.008) TCGA-85-8664-01 8 101083677 101083677 T A RGS22 Nonsense_Mutation p.K172* 0.46 TCGA-85-8664-01 8 113697868 113697868 G T CSMD3 Missense_Mutation p.T750K 0.27 tolerated(0.17) probably_damaging(0.979) TCGA-85-8664-01 8 139151337 139151337 A T FAM135B Missense_Mutation p.L1265I 0.36 deleterious(0) probably_damaging(0.986) TCGA-85-8664-01 8 139163703 139163703 T A FAM135B Silent p.A1005A 0.37 TCGA-85-8664-01 8 144657863 144657863 C T NAPRT1 Missense_Mutation p.V373M 0.36 deleterious(0) probably_damaging(0.972) TCGA-85-8664-01 8 1857566 1857566 G C ARHGEF10 Silent p.T691T 0.34 TCGA-85-8664-01 8 18623004 18623004 C A PSD3 Silent p.L709L 0.36 TCGA-85-8664-01 8 22861937 22861937 G C RHOBTB2 Splice_Site p.X19_splice 0.64 TCGA-85-8664-01 8 23540246 23540246 C G NKX3-1 Missense_Mutation p.D53H 0.65 tolerated(0.13) benign(0.272) TCGA-85-8664-01 8 6420576 6420576 G A ANGPT2 5'UTR 0.64 TCGA-85-8664-01 8 77618681 77618681 G T ZFHX4 Missense_Mutation p.M786I 0.35 benign(0.043) TCGA-85-8664-01 8 94930083 94930083 C T PDP1 Intron 0.38 TCGA-85-8664-01 9 112898511 112898511 C T PALM2-AKAP2 Silent p.H229H 0.69 TCGA-85-8664-01 9 139794080 139794080 G T TRAF2 Nonsense_Mutation p.E75* 0.76 TCGA-85-8664-01 9 21968179 21968179 G A CDKN2A 3'UTR 0.83 TCGA-85-8664-01 9 22447399 22447399 A G DMRTA1 Missense_Mutation p.H112R 0.62 deleterious(0) probably_damaging(0.999) TCGA-85-8664-01 9 34311250 34311250 A G KIF24 Missense_Mutation p.L32S 0.70 deleterious(0) probably_damaging(1) TCGA-85-8664-01 9 6014185 6014185 T C RANBP6 Missense_Mutation p.I475V 0.44 tolerated(1) benign(0.036) TCGA-85-8664-01 X 130412101 130412101 G A IGSF1 Silent p.L688L 0.76 TCGA-85-8664-01 X 135432459 135432459 T A GPR112 Silent p.T2198T 0.82 TCGA-85-8664-01 X 13778718 13778718 C T OFD1 Silent p.V713V 0.18 TCGA-85-8664-01 X 148037158 148037158 G A AFF2 Nonsense_Mutation p.W528* 0.71 TCGA-85-8664-01 X 152938114 152938114 C A PNCK Missense_Mutation p.G119V 0.80 tolerated(0.16) benign(0.042) TCGA-85-8664-01 X 153694823 153694823 G A PLXNA3 Silent p.V968V 0.33 TCGA-85-8664-01 X 20074852 20074852 T G MAP7D2 Missense_Mutation p.K144Q 0.69 deleterious(0) probably_damaging(0.996) TCGA-85-8664-01 X 299519 299519 C A PPP2R3B Silent p.L488L 0.38 TCGA-85-8664-01 X 3229582 3229582 C T MXRA5 Missense_Mutation p.C2221Y 0.80 deleterious(0) probably_damaging(1) TCGA-85-8664-01 X 57313346 57313346 G T FAAH2 Missense_Mutation p.V30F 0.57 tolerated(0.53) benign(0) TCGA-85-8664-01 X 68749539 68749539 C T FAM155B Missense_Mutation p.H387Y 0.57 deleterious(0.01) possibly_damaging(0.888) TCGA-85-8664-01 X 73524599 73524599 G A ZCCHC13 Silent p.Q166Q 0.12 TCGA-85-8664-01 X 86067922 86067922 G T DACH2 Missense_Mutation p.G435V 0.58 deleterious(0) benign(0.222) TCGA-85-8664-01 X 89177798 89177798 G T TGIF2LX Missense_Mutation p.E238D 0.75 tolerated(0.23) benign(0.001) TCGA-85-8666-01 10 108371764 108371764 G A SORCS1 Missense_Mutation p.R980C 0.29 deleterious(0.04) possibly_damaging(0.594) TCGA-85-8666-01 10 118315610 118315610 T A PNLIP Missense_Mutation p.S304T 0.20 tolerated(0.17) benign(0.044) TCGA-85-8666-01 10 11994085 11994085 C A UPF2 Missense_Mutation p.R1005L 0.31 tolerated(0.06) benign(0.008) TCGA-85-8666-01 10 120824942 120824942 G A EIF3A Missense_Mutation p.P364L 0.33 deleterious(0.03) unknown(0) TCGA-85-8666-01 10 14564011 14564011 C A FAM107B Missense_Mutation p.A221S 0.06 tolerated(0.29) probably_damaging(0.941) TCGA-85-8666-01 10 15183530 15183530 T C NMT2 Missense_Mutation p.K46R 0.18 deleterious_low_confidence(0.05) benign(0.364) TCGA-85-8666-01 10 18270261 18270261 G T SLC39A12 Missense_Mutation p.Q315H 0.11 deleterious(0) possibly_damaging(0.832) TCGA-85-8666-01 10 24908784 24908784 C T ARHGAP21 Silent p.G680G 0.32 TCGA-85-8666-01 10 35894470 35894470 C A GJD4 5'UTR 0.13 TCGA-85-8666-01 10 37414814 37414814 C A ANKRD30A 5'UTR 0.19 TCGA-85-8666-01 10 37441009 37441009 C A ANKRD30A Missense_Mutation p.S500Y 0.11 deleterious(0) possibly_damaging(0.831) TCGA-85-8666-01 10 38344309 38344309 G A ZNF33A Silent p.G419G 0.09 TCGA-85-8666-01 10 48389898 48389898 G A RBP3 Missense_Mutation p.P327L 0.22 deleterious(0.01) probably_damaging(0.988) TCGA-85-8666-01 10 54527918 54527918 G T MBL2 Silent p.A242A 0.20 TCGA-85-8666-01 10 83635363 83635363 C A NRG3 Silent p.I89I 0.08 TCGA-85-8666-01 11 105775972 105775972 G T GRIA4 Missense_Mutation p.R368L 0.11 tolerated(0.06) possibly_damaging(0.897) TCGA-85-8666-01 11 111594571 111594571 A G SIK2 Silent p.R833R 0.29 TCGA-85-8666-01 11 111784328 111784328 C T HSPB2 Silent p.D86D 0.22 TCGA-85-8666-01 11 113283529 113283529 C A DRD2 Missense_Mutation p.S296I 0.27 tolerated(0.19) benign(0.026) TCGA-85-8666-01 11 113802483 113802483 T A HTR3B Missense_Mutation p.W88R 0.14 deleterious(0) probably_damaging(0.978) TCGA-85-8666-01 11 117263020 117263020 G A CEP164 Splice_Site p.X787_splice 0.10 TCGA-85-8666-01 11 123810454 123810454 T A OR4D5 Missense_Mutation p.L44H 0.29 deleterious(0) possibly_damaging(0.733) TCGA-85-8666-01 11 123908781 123908781 C A OR10G7 Missense_Mutation p.G310C 0.20 deleterious(0.03) benign(0.004) TCGA-85-8666-01 11 1269243 1269243 C A MUC5B Silent p.T3711T 0.09 TCGA-85-8666-01 11 128709630 128709630 G T KCNJ1 Missense_Mutation p.A189D 0.18 deleterious(0) possibly_damaging(0.701) TCGA-85-8666-01 11 133789827 133789827 C A IGSF9B Missense_Mutation p.G1265W 0.22 deleterious_low_confidence(0) possibly_damaging(0.792) TCGA-85-8666-01 11 20429471 20429471 T G PRMT3 Silent p.V262V 0.19 TCGA-85-8666-01 11 26563604 26563604 G C ANO3 Silent p.L381L 0.18 TCGA-85-8666-01 11 26574831 26574831 G A ANO3 Missense_Mutation p.C442Y 0.27 deleterious(0) probably_damaging(1) TCGA-85-8666-01 11 49175889 49175889 G T FOLH1 Silent p.L593L 0.07 TCGA-85-8666-01 11 55371170 55371170 C T OR4C11 Missense_Mutation p.S227N 0.09 deleterious(0.02) benign(0.35) TCGA-85-8666-01 11 56086427 56086427 T G OR8K3 Silent p.L215L 0.18 TCGA-85-8666-01 11 58170152 58170152 A G OR5B3 Missense_Mutation p.I244T 0.11 tolerated_low_confidence(1) benign(0.001) TCGA-85-8666-01 11 59225087 59225087 C A OR4D6 Nonsense_Mutation p.Y218* 0.17 TCGA-85-8666-01 11 6478134 6478134 C T TRIM3 Missense_Mutation p.M274I 0.26 deleterious(0.01) benign(0.118) TCGA-85-8666-01 11 68115554 68115554 G T LRP5 Missense_Mutation p.D111Y 0.08 deleterious(0) probably_damaging(1) TCGA-85-8666-01 11 6977445 6977445 G T ZNF215 Missense_Mutation p.G413W 0.06 deleterious(0) probably_damaging(1) TCGA-85-8666-01 11 71201950 71201950 G T NADSYN1 Missense_Mutation p.G541V 0.24 deleterious(0) probably_damaging(0.996) TCGA-85-8666-01 11 74716487 74716487 C T NEU3 Silent p.A112A 0.13 TCGA-85-8666-01 11 74914061 74914061 C A SLCO2B1 Intron 0.10 TCGA-85-8666-01 11 7982554 7982554 T C NLRP10 Missense_Mutation p.Y202C 0.11 deleterious(0.02) benign(0.272) TCGA-85-8666-01 12 110628828 110628828 G T IFT81 Missense_Mutation p.R481L 0.16 deleterious(0.02) benign(0.214) TCGA-85-8666-01 12 113664614 113664614 C T TPCN1 Missense_Mutation p.S58L 0.32 tolerated_low_confidence(0.25) benign(0.002) TCGA-85-8666-01 12 113835012 113835012 G A SDS Missense_Mutation p.A204V 0.17 deleterious(0) possibly_damaging(0.803) TCGA-85-8666-01 12 118457505 118457505 A G RFC5 Missense_Mutation p.T67A 0.29 deleterious(0) probably_damaging(0.987) TCGA-85-8666-01 12 124311323 124311323 C G DNAH10 Silent p.L1305L 0.20 TCGA-85-8666-01 12 125618576 125618576 G A AACS Missense_Mutation p.R526K 0.23 tolerated(0.31) benign(0.002) TCGA-85-8666-01 12 15090959 15090959 G A ERP27 Missense_Mutation p.T41M 0.13 tolerated(0.05) benign(0.016) TCGA-85-8666-01 12 432353 432353 C A KDM5A Missense_Mutation p.D724Y 0.11 deleterious(0) benign(0.271) TCGA-85-8666-01 12 4657996 4657996 G T RAD51AP1 Missense_Mutation p.A201S 0.10 deleterious(0.03) possibly_damaging(0.767) TCGA-85-8666-01 12 49435774 49435774 C T KMT2D Splice_Site p.X2037_splice 0.22 TCGA-85-8666-01 12 54856444 54856444 C G GTSF1 Missense_Mutation p.D104H 0.14 deleterious(0.01) possibly_damaging(0.858) TCGA-85-8666-01 12 56626562 56626562 C T SLC39A5 Missense_Mutation p.P126L 0.27 deleterious(0) benign(0.193) TCGA-85-8666-01 12 65088683 65088683 G T RASSF3 Missense_Mutation p.K236N 0.07 tolerated_low_confidence(0.14) benign(0.002) TCGA-85-8666-01 12 72164437 72164437 G T RAB21 Silent p.A95A 0.11 TCGA-85-8666-01 12 7972101 7972101 T C SLC2A14 Missense_Mutation p.M373V 0.45 deleterious(0.03) benign(0.138) TCGA-85-8666-01 12 95424531 95424532 - C NR2C1 Intron 0.30 TCGA-85-8666-01 12 9906128 9906128 G T CD69 Missense_Mutation p.S183R 0.22 deleterious(0.02) possibly_damaging(0.575) TCGA-85-8666-01 12 9906129 9906129 C G CD69 Missense_Mutation p.S183T 0.19 tolerated(0.1) benign(0.115) TCGA-85-8666-01 13 103419822 103419822 G A TEX30 Missense_Mutation p.S102L 0.33 deleterious(0) probably_damaging(1) TCGA-85-8666-01 13 23907380 23907380 C T SACS Silent p.V3545V 0.24 TCGA-85-8666-01 13 23907910 23907910 C A SACS Missense_Mutation p.V3369F 0.17 possibly_damaging(0.626) TCGA-85-8666-01 13 27239201 27239201 A G WASF3 Missense_Mutation p.N57S 0.26 tolerated(0.06) benign(0.007) TCGA-85-8666-01 13 39262898 39262898 G A FREM2 Missense_Mutation p.E473K 0.07 tolerated(0.28) benign(0.093) TCGA-85-8666-01 13 61986603 61986603 G A PCDH20 Silent p.T543T 0.12 TCGA-85-8666-01 14 101201252 101201252 C T DLK1 3'UTR 0.20 TCGA-85-8666-01 14 106805229 106805229 C A IGHV4-31 Missense_Mutation p.A112S 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.879) TCGA-85-8666-01 14 20019996 20019996 G C POTEM Missense_Mutation p.S75R 0.07 tolerated_low_confidence(0.14) benign(0.003) TCGA-85-8666-01 14 20404268 20404268 C G OR4K1 Missense_Mutation p.S148C 0.16 deleterious(0.02) probably_damaging(0.972) TCGA-85-8666-01 14 23884446 23884446 G T MYH7 Missense_Mutation p.Q1773K 0.09 deleterious(0) possibly_damaging(0.897) TCGA-85-8666-01 14 34269647 34269647 C T NPAS3 Missense_Mutation p.P712S 0.23 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-85-8666-01 14 52164858 52164858 A T FRMD6 Splice_Site p.X34_splice 0.16 TCGA-85-8666-01 14 86089582 86089582 A G FLRT2 Missense_Mutation p.Q575R 0.23 tolerated(1) benign(0.004) TCGA-85-8666-01 14 92471268 92471268 T A TRIP11 Missense_Mutation p.T1018S 0.17 deleterious(0.03) benign(0.111) TCGA-85-8666-01 15 25451262 25451262 C A SNORD115-22 5'Flank 0.12 TCGA-85-8666-01 15 50782539 50782539 C G USP8 Missense_Mutation p.A684G 0.15 deleterious(0.02) probably_damaging(0.97) TCGA-85-8666-01 15 56436596 56436596 T C RFX7 Intron 0.19 TCGA-85-8666-01 15 65157346 65157346 C T PLEKHO2 Silent p.S244S 0.12 TCGA-85-8666-01 15 75702292 75702292 C G SIN3A Missense_Mutation p.R401T 0.16 tolerated(0.1) possibly_damaging(0.781) TCGA-85-8666-01 15 75979817 75979817 C T CSPG4 Missense_Mutation p.V1197I 0.15 tolerated(1) benign(0.013) TCGA-85-8666-01 15 89172498 89172498 G T AEN Silent p.A194A 0.14 TCGA-85-8666-01 16 20362065 20362065 C A UMOD 5'UTR 0.09 TCGA-85-8666-01 16 24931575 24931575 T G ARHGAP17 Missense_Mutation p.N841T 0.20 deleterious_low_confidence(0) benign(0) TCGA-85-8666-01 16 31131834 31131834 A G KAT8 Missense_Mutation p.K154R 0.33 tolerated(0.08) benign(0.022) TCGA-85-8666-01 16 55862695 55862695 T C CES1 Missense_Mutation p.T82A 0.22 deleterious(0.04) benign(0.365) TCGA-85-8666-01 16 69373705 69373705 G A NIP7 5'UTR 0.10 TCGA-85-8666-01 16 72991702 72991702 C A ZFHX3 Silent p.A781A 0.25 TCGA-85-8666-01 16 78466555 78466555 T C WWOX Missense_Mutation p.V321A 0.26 deleterious(0.01) benign(0.1) TCGA-85-8666-01 16 836833 836833 G A RPUSD1 Missense_Mutation p.L169F 0.29 tolerated(0.27) benign(0.166) TCGA-85-8666-01 16 90102802 90102802 G A GAS8 Silent p.K188K 0.22 TCGA-85-8666-01 17 10356231 10356231 G A MYH4 Nonsense_Mutation p.Q1044* 0.24 TCGA-85-8666-01 17 16229270 16229270 G A PIGL 3'UTR 0.37 TCGA-85-8666-01 17 16526224 16526224 T C ZNF624 Missense_Mutation p.Q659R 0.13 tolerated(0.06) probably_damaging(0.993) TCGA-85-8666-01 17 21731452 21731452 A G UBBP4 Missense_Mutation p.E176G 0.16 tolerated(0.16) benign(0.017) TCGA-85-8666-01 17 32647948 32647948 G A CCL8 3'UTR 0.36 TCGA-85-8666-01 17 34325363 34325363 C G CCL15 Missense_Mutation p.M67I 0.22 tolerated(0.08) benign(0.392) TCGA-85-8666-01 17 48677159 48677159 G T CACNA1G Missense_Mutation p.R1210L 0.19 tolerated(0.49) benign(0.002) TCGA-85-8666-01 17 49043523 49043523 A G SPAG9 3'UTR 0.14 TCGA-85-8666-01 17 7579437 7579437 C - TP53 Frame_Shift_Del p.A84Pfs*39 0.26 TCGA-85-8666-01 17 8701726 8701726 G A MFSD6L Missense_Mutation p.S238F 0.27 tolerated(0.09) benign(0.063) TCGA-85-8666-01 17 9808472 9808472 A T RCVRN Missense_Mutation p.L9Q 0.16 deleterious(0) probably_damaging(0.998) TCGA-85-8666-01 18 34320742 34320742 G A FHOD3 Missense_Mutation p.E1059K 0.24 deleterious(0.02) possibly_damaging(0.466) TCGA-85-8666-01 18 34424184 34424184 G T KIAA1328 Missense_Mutation p.G84V 0.31 deleterious(0.02) possibly_damaging(0.89) TCGA-85-8666-01 18 43523214 43523214 G C EPG5 Nonsense_Mutation p.S619* 0.27 TCGA-85-8666-01 18 47376082 47376082 G A MYO5B Intron 0.35 TCGA-85-8666-01 18 72999555 72999555 G C TSHZ1 Silent p.G686G 0.24 TCGA-85-8666-01 19 12902670 12902670 C G JUNB Missense_Mutation p.L29V 0.11 tolerated(0.46) benign(0.02) TCGA-85-8666-01 19 14094309 14094309 C T RFX1 Missense_Mutation p.G140S 0.27 tolerated_low_confidence(0.34) benign(0.254) TCGA-85-8666-01 19 19823814 19823814 G C ZNF14 Missense_Mutation p.I92M 0.12 tolerated(0.15) benign(0.001) TCGA-85-8666-01 19 21991156 21991156 A T ZNF43 Silent p.T561T 0.14 TCGA-85-8666-01 19 22363942 22363942 C A ZNF676 Nonsense_Mutation p.G193* 0.11 TCGA-85-8666-01 19 38573607 38573607 C A SIPA1L3 Missense_Mutation p.R468S 0.21 tolerated(0.09) benign(0.155) TCGA-85-8666-01 19 42396414 42396414 C T ARHGEF1 Missense_Mutation p.P128S 0.24 tolerated(0.6) benign(0.002) TCGA-85-8666-01 19 48558237 48558237 G T PLA2G4C Missense_Mutation p.L453M 0.23 tolerated(0.06) probably_damaging(0.925) TCGA-85-8666-01 19 49842069 49842069 C G CD37 Missense_Mutation p.T187S 0.12 tolerated(0.25) benign(0.026) TCGA-85-8666-01 19 55085848 55085848 G C LILRA2 Missense_Mutation p.G51R 0.06 deleterious(0.01) probably_damaging(0.975) TCGA-85-8666-01 19 55112399 55112399 T A LILRA1 3'UTR 0.25 TCGA-85-8666-01 19 55421383 55421383 A C NCR1 Missense_Mutation p.I214L 0.09 tolerated(0.61) benign(0.002) TCGA-85-8666-01 19 57326952 57326952 T C PEG3 Missense_Mutation p.H953R 0.19 tolerated(0.23) possibly_damaging(0.689) TCGA-85-8666-01 19 58905879 58905879 T C RPS5 Missense_Mutation p.C155R 0.10 deleterious(0) probably_damaging(0.951) TCGA-85-8666-01 19 58982143 58982143 C A ZNF324 Missense_Mutation p.P95Q 0.18 tolerated(0.06) benign(0.015) TCGA-85-8666-01 19 58982145 58982145 C A ZNF324 Silent p.R96R 0.17 TCGA-85-8666-01 19 58982350 58982350 C A ZNF324 Missense_Mutation p.S164Y 0.30 deleterious(0.01) probably_damaging(0.935) TCGA-85-8666-01 19 8154461 8154461 T C FBN3 Missense_Mutation p.Y2115C 0.16 deleterious(0) possibly_damaging(0.893) TCGA-85-8666-01 19 9088232 9088232 A C MUC16 Missense_Mutation p.L1195V 0.13 unknown(0) TCGA-85-8666-01 1 111661502 111661502 C A DRAM2 Missense_Mutation p.M206I 0.16 tolerated(0.96) benign(0.002) TCGA-85-8666-01 1 145517353 145517353 G C PEX11B Missense_Mutation p.R46P 0.14 deleterious(0) benign(0.424) TCGA-85-8666-01 1 147380963 147380963 C T GJA8 Missense_Mutation p.A294V 0.22 deleterious(0.05) possibly_damaging(0.543) TCGA-85-8666-01 1 154459004 154459004 G A SHE Missense_Mutation p.P394S 0.14 tolerated(0.96) benign(0.024) TCGA-85-8666-01 1 158631131 158631131 G T SPTA1 Missense_Mutation p.H845N 0.27 deleterious(0) probably_damaging(0.999) TCGA-85-8666-01 1 159410278 159410278 C A OR10J1 Silent p.R244R 0.25 TCGA-85-8666-01 1 173490487 173490487 C A SLC9C2 Missense_Mutation p.G898C 0.20 deleterious(0) probably_damaging(1) TCGA-85-8666-01 1 175054569 175054569 C T TNN Silent p.I421I 0.19 TCGA-85-8666-01 1 179090987 179090987 C G ABL2 Missense_Mutation p.E235Q 0.12 deleterious(0.02) possibly_damaging(0.794) TCGA-85-8666-01 1 179991850 179991850 G T CEP350 Missense_Mutation p.D1085Y 0.19 possibly_damaging(0.594) TCGA-85-8666-01 1 184792867 184792867 T A FAM129A Missense_Mutation p.N243Y 0.14 deleterious(0) possibly_damaging(0.759) TCGA-85-8666-01 1 190195414 190195414 T G BRINP3 Missense_Mutation p.E253D 0.14 tolerated(0.15) benign(0.004) TCGA-85-8666-01 1 196977852 196977852 C A CFHR5 3'UTR 0.43 TCGA-85-8666-01 1 197115474 197115474 C T ASPM Missense_Mutation p.E32K 0.28 tolerated(0.37) benign(0.118) TCGA-85-8666-01 1 19992491 19992491 C T HTR6 Missense_Mutation p.P82L 0.13 tolerated(0.19) possibly_damaging(0.85) TCGA-85-8666-01 1 20009577 20009577 C T TMCO4 Missense_Mutation p.D621N 0.16 tolerated_low_confidence(0.09) benign(0.015) TCGA-85-8666-01 1 201047177 201047177 C A CACNA1S Missense_Mutation p.M483I 0.10 tolerated(0.07) benign(0.19) TCGA-85-8666-01 1 203276491 203276491 C T BTG2 Silent p.L134L 0.12 TCGA-85-8666-01 1 204425152 204425152 G A PIK3C2B Missense_Mutation p.A592V 0.16 deleterious(0.02) benign(0.219) TCGA-85-8666-01 1 205888069 205888069 C A SLC26A9 Missense_Mutation p.G719W 0.16 deleterious(0) probably_damaging(0.999) TCGA-85-8666-01 1 207850762 207850762 A G CR1L Silent p.P42P 0.18 TCGA-85-8666-01 1 220440471 220440471 A C RAB3GAP2 Intron 0.20 TCGA-85-8666-01 1 226074433 226074433 C G LEFTY1 Missense_Mutation p.Q365H 0.14 deleterious_low_confidence(0) benign(0.135) TCGA-85-8666-01 1 235860412 235860412 C G LYST Missense_Mutation p.C3512S 0.25 deleterious(0.05) probably_damaging(0.983) TCGA-85-8666-01 1 236761260 236761260 G C HEATR1 Missense_Mutation p.A174G 0.19 deleterious(0.01) possibly_damaging(0.896) TCGA-85-8666-01 1 242383296 242383296 C A PLD5 Silent p.L243L 0.16 TCGA-85-8666-01 1 245861610 245861610 G C KIF26B Missense_Mutation p.K2009N 0.26 tolerated(0.05) unknown(0) TCGA-85-8666-01 1 248201629 248201629 A G OR2L2 Silent p.S20S 0.21 TCGA-85-8666-01 1 248224406 248224406 G T OR2L3 Silent p.V141V 0.13 TCGA-85-8666-01 1 248525547 248525547 C G OR2T4 Nonsense_Mutation p.S222* 0.15 TCGA-85-8666-01 1 248756784 248756784 C T OR2T10 Missense_Mutation p.G96R 0.15 deleterious(0) benign(0.374) TCGA-85-8666-01 1 37282714 37282714 T - GRIK3 Frame_Shift_Del p.T680Pfs*14 0.11 TCGA-85-8666-01 1 44437660 44437660 T G DPH2 Missense_Mutation p.C362W 0.12 tolerated(0.06) benign(0.026) TCGA-85-8666-01 1 53571441 53571441 A T SLC1A7 Missense_Mutation p.M146K 0.10 deleterious(0) possibly_damaging(0.673) TCGA-85-8666-01 1 62262988 62262988 C G INADL Silent p.A430A 0.06 TCGA-85-8666-01 1 75039053 75039053 G T C1orf173 Missense_Mutation p.P781T 0.19 tolerated(0.09) benign(0.108) TCGA-85-8666-01 1 77752773 77752773 C A AK5 Missense_Mutation p.L70I 0.15 tolerated(0.56) probably_damaging(0.969) TCGA-85-8666-01 1 82409318 82409318 G A LPHN2 Missense_Mutation p.D355N 0.11 tolerated(0.39) benign(0.01) TCGA-85-8666-01 20 15967421 15967421 G T MACROD2 Silent p.S345S 0.19 TCGA-85-8666-01 20 1961347 1961347 C A PDYN Missense_Mutation p.K129N 0.12 tolerated(0.06) benign(0.06) TCGA-85-8666-01 20 31017724 31017724 G A ASXL1 Missense_Mutation p.D196N 0.32 tolerated(0.08) possibly_damaging(0.808) TCGA-85-8666-01 20 32232182 32232182 C T CBFA2T2 Silent p.S515S 0.05 TCGA-85-8666-01 20 34285660 34285660 G A NFS1 Silent p.S90S 0.29 TCGA-85-8666-01 20 45878149 45878149 C G ZMYND8 Silent p.L552L 0.05 TCGA-85-8666-01 20 47317426 47317426 T C PREX1 Splice_Site p.X262_splice 0.27 TCGA-85-8666-01 20 62197250 62197250 C T HELZ2 Silent p.E975E 0.38 TCGA-85-8666-01 20 8755219 8755219 A T PLCB1 Silent p.S988S 0.08 TCGA-85-8666-01 21 10996075 10996075 C A TPTE RNA 0.11 TCGA-85-8666-01 21 11047504 11047504 G T BAGE2 RNA 0.04 TCGA-85-8666-01 21 22746273 22746273 G C NCAM2 Missense_Mutation p.D379H 0.24 tolerated(0.54) probably_damaging(1) TCGA-85-8666-01 21 37619815 37619815 C G DOPEY2 Missense_Mutation p.S1566R 0.25 tolerated(0.48) possibly_damaging(0.495) TCGA-85-8666-01 21 47404349 47404349 G T COL6A1 Missense_Mutation p.A132S 0.30 deleterious(0) unknown(0) TCGA-85-8666-01 22 26239699 26239699 C A MYO18B Intron 0.26 TCGA-85-8666-01 22 33253263 33253263 C T TIMP3 Missense_Mutation p.H78Y 0.22 deleterious(0) benign(0.206) TCGA-85-8666-01 22 35947756 35947756 G C RASD2 Missense_Mutation p.V160L 0.25 tolerated(0.69) benign(0.007) TCGA-85-8666-01 22 46805654 46805654 T G CELSR1 Missense_Mutation p.Q1686P 0.26 deleterious(0.03) benign(0.009) TCGA-85-8666-01 2 109381479 109381479 G A RANBP2 Missense_Mutation p.S1495N 0.21 tolerated(0.18) benign(0.094) TCGA-85-8666-01 2 116066860 116066860 G A DPP10 Missense_Mutation p.A40T 0.19 deleterious(0) benign(0.343) TCGA-85-8666-01 2 127960955 127960955 T G CYP27C1 Silent p.S57S 0.17 TCGA-85-8666-01 2 132558703 132558703 C A C2orf27B 5'UTR 0.38 TCGA-85-8666-01 2 144525687 144525687 A T ARHGAP15 Silent p.I458I 0.23 TCGA-85-8666-01 2 162870976 162870976 C A DPP4 Splice_Site p.X523_splice 0.18 TCGA-85-8666-01 2 163361097 163361097 G T KCNH7 Silent p.T328T 0.20 TCGA-85-8666-01 2 165984182 165984182 C T SCN3A Missense_Mutation p.E1118K 0.19 deleterious(0.05) probably_damaging(0.997) TCGA-85-8666-01 2 174068590 174068590 G C MLTK Missense_Mutation p.D246H 0.04 deleterious(0) probably_damaging(0.965) TCGA-85-8666-01 2 179399418 179399418 A G TTN Missense_Mutation p.L33975P 0.21 TCGA-85-8666-01 2 180309602 180309602 C G ZNF385B Splice_Site p.X399_splice 0.20 TCGA-85-8666-01 2 185798458 185798458 A G ZNF804A Silent p.V128V 0.19 TCGA-85-8666-01 2 185802331 185802331 C G ZNF804A Missense_Mutation p.H736Q 0.23 deleterious(0.03) probably_damaging(0.969) TCGA-85-8666-01 2 190924812 190924812 G T MSTN Missense_Mutation p.F241L 0.21 tolerated(0.64) benign(0.012) TCGA-85-8666-01 2 200193452 200193452 G A SATB2 Missense_Mutation p.S452F 0.27 tolerated(0.7) benign(0.104) TCGA-85-8666-01 2 210558373 210558373 G T MAP2 Missense_Mutation p.M493I 0.22 tolerated_low_confidence(0.43) benign(0.002) TCGA-85-8666-01 2 215645820 215645820 A G BARD1 Silent p.L260L 0.24 TCGA-85-8666-01 2 222307583 222307583 C G EPHA4 Silent p.P680P 0.24 TCGA-85-8666-01 2 225368476 225368476 C T CUL3 Missense_Mutation p.E424K 0.29 deleterious(0) probably_damaging(0.992) TCGA-85-8666-01 2 238449098 238449098 G A MLPH Silent p.E404E 0.25 TCGA-85-8666-01 2 242283192 242283192 G C SEPT2 Missense_Mutation p.G241A 0.28 deleterious(0.02) possibly_damaging(0.791) TCGA-85-8666-01 2 26486253 26486253 C T HADHB Nonsense_Mutation p.Q39* 0.16 TCGA-85-8666-01 2 27666898 27666898 G A KRTCAP3 Missense_Mutation p.R233Q 0.27 tolerated_low_confidence(1) benign(0) TCGA-85-8666-01 2 40366787 40366787 C A SLC8A1 Nonsense_Mutation p.E767* 0.22 TCGA-85-8666-01 2 47604201 47604201 T C EPCAM Silent p.F180F 0.29 TCGA-85-8666-01 2 50724691 50724693 CGC TGCG NRXN1 Frame_Shift_Ins p.G926Afs*7 0.25 TCGA-85-8666-01 2 54876316 54876316 G C SPTBN1 Missense_Mutation p.E1731Q 0.26 deleterious(0) probably_damaging(0.987) TCGA-85-8666-01 2 55544888 55544888 T G CCDC88A Missense_Mutation p.E1137D 0.28 deleterious(0.02) probably_damaging(0.995) TCGA-85-8666-01 2 73868807 73868808 - C NAT8 5'UTR 0.12 TCGA-85-8666-01 2 77746942 77746942 A T LRRTM4 Missense_Mutation p.L18Q 0.26 tolerated(0.05) possibly_damaging(0.797) TCGA-85-8666-01 2 88424005 88424005 C A FABP1 Intron 0.16 TCGA-85-8666-01 2 90121657 90121657 C A IGKV1D-17 5'UTR 0.18 TCGA-85-8666-01 3 107435619 107435619 G T BBX Missense_Mutation p.A110S 0.13 deleterious(0) probably_damaging(0.998) TCGA-85-8666-01 3 113164174 113164174 G A SPICE1 Missense_Mutation p.L850F 0.12 deleterious(0) probably_damaging(0.999) TCGA-85-8666-01 3 113850004 113850004 G C DRD3 Missense_Mutation p.R323G 0.12 deleterious(0) probably_damaging(0.987) TCGA-85-8666-01 3 120115748 120115748 C A FSTL1 3'UTR 0.10 TCGA-85-8666-01 3 121238850 121238850 G C POLQ Missense_Mutation p.L446V 0.18 deleterious(0) probably_damaging(1) TCGA-85-8666-01 3 123003461 123003461 G C ADCY5 Silent p.L1260L 0.19 TCGA-85-8666-01 3 151166332 151166332 G T IGSF10 Missense_Mutation p.N479K 0.09 deleterious(0.03) possibly_damaging(0.737) TCGA-85-8666-01 3 157082132 157082132 G A VEPH1 Nonsense_Mutation p.Q433* 0.09 TCGA-85-8666-01 3 30732940 30732940 C G TGFBR2 Missense_Mutation p.T543S 0.22 tolerated(0.46) benign(0.155) TCGA-85-8666-01 3 36527665 36527665 G A STAC Missense_Mutation p.R204H 0.26 deleterious(0) probably_damaging(0.945) TCGA-85-8666-01 3 37151029 37151029 T G LRRFIP2 Missense_Mutation p.S200R 0.29 deleterious(0.02) benign(0.039) TCGA-85-8666-01 3 38347529 38347529 G A SLC22A14 Silent p.E4E 0.26 TCGA-85-8666-01 3 49693563 49693563 G A BSN Missense_Mutation p.G2192S 0.37 unknown(0) TCGA-85-8666-01 3 69096862 69096862 G A TMF1 Nonsense_Mutation p.Q332* 0.27 TCGA-85-8666-01 4 114244912 114244912 C T ANK2 Intron 0.29 TCGA-85-8666-01 4 121698345 121698345 G T PRDM5 Missense_Mutation p.T512K 0.21 deleterious(0) possibly_damaging(0.817) TCGA-85-8666-01 4 164272789 164272789 G T NPY5R 3'UTR 0.19 TCGA-85-8666-01 4 187175875 187175875 G A KLKB1 Missense_Mutation p.D483N 0.32 deleterious(0) probably_damaging(1) TCGA-85-8666-01 4 187516842 187516842 C A FAT1 Splice_Site p.X4380_splice 0.40 TCGA-85-8666-01 4 44450350 44450350 C A KCTD8 Missense_Mutation p.S64I 0.29 deleterious(0.02) probably_damaging(0.99) TCGA-85-8666-01 4 77951969 77951969 C A SEPT11 Missense_Mutation p.H374N 0.23 deleterious(0.03) possibly_damaging(0.811) TCGA-85-8666-01 4 78081885 78081885 A G CCNG2 Silent p.K96K 0.20 TCGA-85-8666-01 4 8608486 8608486 C T CPZ Missense_Mutation p.T310M 0.18 tolerated(0.14) benign(0.223) TCGA-85-8666-01 5 112177751 112177751 C G APC Missense_Mutation p.Q2154E 0.05 benign(0.311) TCGA-85-8666-01 5 112178454 112178454 C T APC Missense_Mutation p.A2388V 0.07 benign(0.003) TCGA-85-8666-01 5 121187725 121187725 C A FTMT Missense_Mutation p.R23S 0.15 tolerated_low_confidence(0.06) benign(0.258) TCGA-85-8666-01 5 139060335 139060335 C G CXXC5 Missense_Mutation p.S76C 0.10 deleterious(0) probably_damaging(0.993) TCGA-85-8666-01 5 140475067 140475067 G T PCDHB2 Silent p.R231R 0.19 TCGA-85-8666-01 5 140604352 140604352 C T PCDHB14 Silent p.D425D 0.13 TCGA-85-8666-01 5 140793016 140793016 G T PCDHGA10 Missense_Mutation p.G92C 0.12 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-85-8666-01 5 142586978 142586978 G A ARHGAP26 Missense_Mutation p.C735Y 0.15 tolerated(0.91) benign(0.384) TCGA-85-8666-01 5 16668526 16668526 C A MYO10 Missense_Mutation p.A1979S 0.10 tolerated(0.52) probably_damaging(0.992) TCGA-85-8666-01 5 23523468 23523468 G T PRDM9 Splice_Site p.X317_splice 0.12 TCGA-85-8666-01 5 23527786 23527786 G T PRDM9 Missense_Mutation p.R863S 0.10 tolerated(0.31) probably_damaging(0.969) TCGA-85-8666-01 5 31305295 31305295 A G CDH6 Silent p.E338E 0.31 TCGA-85-8666-01 5 33637788 33637788 G T ADAMTS12 Missense_Mutation p.H594Q 0.32 tolerated(0.76) benign(0.023) TCGA-85-8666-01 5 35691258 35691258 G C SPEF2 Silent p.A548A 0.09 TCGA-85-8666-01 5 56777284 56777284 C T ACTBL2 3'UTR 0.16 TCGA-85-8666-01 6 10755432 10755432 A T TMEM14B Missense_Mutation p.K87I 0.26 deleterious(0) probably_damaging(0.997) TCGA-85-8666-01 6 155752050 155752050 C A NOX3 Missense_Mutation p.G273V 0.47 deleterious(0.02) possibly_damaging(0.856) TCGA-85-8666-01 6 27776173 27776173 G C HIST1H2AI Missense_Mutation p.E62D 0.13 deleterious_low_confidence(0.02) benign(0.02) TCGA-85-8666-01 6 28500177 28500177 A - GPX5 Frame_Shift_Del p.V148Sfs*5 0.12 TCGA-85-8666-01 6 28539975 28539975 C A SCAND3 Missense_Mutation p.A1231S 0.29 tolerated_low_confidence(0.51) probably_damaging(0.973) TCGA-85-8666-01 6 45870943 45870943 C A CLIC5 Missense_Mutation p.G372V 0.28 deleterious(0) probably_damaging(0.999) TCGA-85-8666-01 6 49573501 49573501 C A RHAG 3'UTR 0.25 TCGA-85-8666-01 6 70639432 70639432 G T COL19A1 Missense_Mutation p.R169L 0.38 tolerated(0.06) unknown(0) TCGA-85-8666-01 6 73904444 73904444 C T KCNQ5 Silent p.F721F 0.40 TCGA-85-8666-01 7 11485851 11485851 C A THSD7A Silent p.G967G 0.21 TCGA-85-8666-01 7 117149089 117149089 G A CFTR Missense_Mutation p.E56K 0.14 deleterious(0.02) benign(0.01) TCGA-85-8666-01 7 126173656 126173656 C T GRM8 Missense_Mutation p.G594R 0.19 deleterious(0) probably_damaging(1) TCGA-85-8666-01 7 132973799 132973799 A G EXOC4 Missense_Mutation p.I134V 0.23 tolerated(0.47) possibly_damaging(0.487) TCGA-85-8666-01 7 148702326 148702326 C T PDIA4 Missense_Mutation p.A477T 0.06 deleterious(0.03) possibly_damaging(0.873) TCGA-85-8666-01 7 151932981 151932981 C T KMT2C Missense_Mutation p.R897Q 0.10 probably_damaging(0.998) TCGA-85-8666-01 7 157985057 157985057 C G PTPRN2 Missense_Mutation p.A171P 0.22 tolerated(1) benign(0) TCGA-85-8666-01 7 21698604 21698604 G T DNAH11 Silent p.L1766L 0.43 TCGA-85-8666-01 7 36677476 36677476 A G AOAH Missense_Mutation p.V144A 0.11 deleterious(0.03) benign(0.15) TCGA-85-8666-01 7 66482902 66482902 G T TYW1 Silent p.G211G 0.21 TCGA-85-8666-01 7 70885905 70885905 T A WBSCR17 Missense_Mutation p.V259D 0.18 deleterious(0) probably_damaging(0.998) TCGA-85-8666-01 7 71177151 71177151 T A WBSCR17 3'UTR 0.17 TCGA-85-8666-01 7 95751167 95751167 C A SLC25A13 Silent p.L579L 0.18 TCGA-85-8666-01 7 98256596 98256596 G C NPTX2 Missense_Mutation p.E336D 0.18 tolerated(0.18) benign(0.047) TCGA-85-8666-01 8 105025682 105025682 A C RIMS2 Silent p.A1019A 0.26 TCGA-85-8666-01 8 113277757 113277757 C - CSMD3 Frame_Shift_Del p.V3191Lfs*17 0.26 TCGA-85-8666-01 8 113662441 113662441 G T CSMD3 Missense_Mutation p.L1048I 0.08 tolerated(0.11) possibly_damaging(0.876) TCGA-85-8666-01 8 13259103 13259103 G T DLC1 Missense_Mutation p.A350E 0.13 deleterious_low_confidence(0.05) benign(0.131) TCGA-85-8666-01 8 145138289 145138289 C T GPAA1 Intron 0.36 TCGA-85-8666-01 8 24255243 24255243 G A ADAMDEC1 Silent p.V225V 0.11 TCGA-85-8666-01 8 48686876 48686876 C T PRKDC Missense_Mutation p.R4081Q 0.17 benign(0.014) TCGA-85-8666-01 8 623547 623547 C G ERICH1 Missense_Mutation p.A269P 0.20 tolerated_low_confidence(0.14) benign(0) TCGA-85-8666-01 8 62475354 62475354 C A ASPH Silent p.V462V 0.35 TCGA-85-8666-01 8 65527720 65527720 T A CYP7B1 Missense_Mutation p.Y307F 0.31 deleterious(0.05) probably_damaging(0.999) TCGA-85-8666-01 8 67365948 67365948 C T ADHFE1 Intron 0.27 TCGA-85-8666-01 9 107581923 107581923 C G ABCA1 Missense_Mutation p.G1062A 0.10 deleterious(0) probably_damaging(1) TCGA-85-8666-01 9 115759735 115759735 C A ZNF883 RNA 0.10 TCGA-85-8666-01 9 117124182 117124182 C A AKNA Missense_Mutation p.E642D 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-85-8666-01 9 117808917 117808917 G A TNC Missense_Mutation p.P1633S 0.25 tolerated(0.21) benign(0.062) TCGA-85-8666-01 9 120474933 120474933 A T TLR4 Missense_Mutation p.N176I 0.09 deleterious(0.05) probably_damaging(0.964) TCGA-85-8666-01 9 123583722 123583722 G C PSMD5 Missense_Mutation p.L343V 0.24 deleterious(0.04) benign(0.205) TCGA-85-8666-01 9 133946973 133946973 C A LAMC3 Missense_Mutation p.P1058T 0.23 tolerated(0.05) benign(0.056) TCGA-85-8666-01 9 139733466 139733466 C T RABL6 Silent p.V463V 0.11 TCGA-85-8666-01 9 21971128 21971131 GTGG - CDKN2A Frame_Shift_Del p.A76Vfs*69 0.30 TCGA-85-8666-01 9 37732324 37732324 G T FRMPD1 Missense_Mutation p.E294D 0.21 deleterious(0) probably_damaging(0.998) TCGA-85-8666-01 9 43737503 43737503 C A CNTNAP3B Silent p.R125R 0.18 TCGA-85-8666-01 9 71080117 71080117 T C PGM5 Silent p.F384F 0.07 TCGA-85-8666-01 9 95738650 95738650 G A FGD3 Missense_Mutation p.G38R 0.12 tolerated_low_confidence(0.08) benign(0.179) TCGA-85-8666-01 X 11157539 11157539 A G ARHGAP6 Missense_Mutation p.L790P 0.50 deleterious_low_confidence(0.02) benign(0.005) TCGA-85-8666-01 X 17744993 17744993 A G NHS Missense_Mutation p.K902E 0.37 tolerated(0.37) benign(0.272) TCGA-85-8666-01 X 30237456 30237456 G T MAGEB2 Silent p.V253V 0.44 TCGA-85-8666-01 X 5827255 5827255 T G NLGN4X Silent p.A217A 0.54 TCGA-85-8666-01 X 71349781 71349781 C A RGAG4 Missense_Mutation p.R537L 0.44 deleterious_low_confidence(0.04) unknown(0) TCGA-85-8666-01 X 99849326 99849326 T A TNMD Silent p.P130P 0.39 TCGA-85-A4CL-01 10 101451250 101451250 C G ENTPD7 Nonsense_Mutation p.S273* 0.24 TCGA-85-A4CL-01 10 101985735 101985735 C G CHUK Missense_Mutation p.E49Q 0.22 deleterious(0) possibly_damaging(0.85) TCGA-85-A4CL-01 10 11371072 11371072 G A CELF2 Intron 0.08 TCGA-85-A4CL-01 10 123845135 123845136 - G TACC2 Frame_Shift_Ins p.E1042Gfs*8 0.16 TCGA-85-A4CL-01 10 124610109 124610109 C T CUZD1 5'UTR 0.32 TCGA-85-A4CL-01 10 129902865 129902865 C G MKI67 Silent p.L2413L 0.05 TCGA-85-A4CL-01 10 13852818 13852818 C T FRMD4A Missense_Mutation p.E68K 0.47 deleterious(0.01) benign(0.423) TCGA-85-A4CL-01 10 14890858 14890858 G A HSPA14 Missense_Mutation p.E114K 0.08 tolerated(0.2) probably_damaging(0.998) TCGA-85-A4CL-01 10 15161444 15161444 G A NMT2 Silent p.N356N 0.27 TCGA-85-A4CL-01 10 16918918 16918918 G C CUBN Missense_Mutation p.F3028L 0.23 deleterious(0) possibly_damaging(0.488) TCGA-85-A4CL-01 10 16957870 16957870 G C CUBN Missense_Mutation p.S2387C 0.25 deleterious(0) probably_damaging(0.997) TCGA-85-A4CL-01 10 16957894 16957894 A C CUBN Missense_Mutation p.F2379C 0.31 deleterious(0) probably_damaging(0.995) TCGA-85-A4CL-01 10 28151539 28151539 T C ARMC4 Missense_Mutation p.M875V 0.34 deleterious(0.02) benign(0.081) TCGA-85-A4CL-01 10 30318281 30318281 C T KIAA1462 Missense_Mutation p.A266T 0.32 tolerated(0.3) benign(0.33) TCGA-85-A4CL-01 10 30658087 30658087 C A AL161651.1 5'Flank 0.29 TCGA-85-A4CL-01 10 38344887 38344887 A G ZNF33A Missense_Mutation p.N612S 0.45 tolerated(0.48) benign(0.075) TCGA-85-A4CL-01 10 43883317 43883317 C T HNRNPF Missense_Mutation p.E6K 0.30 tolerated(0.11) benign(0.008) TCGA-85-A4CL-01 10 49628245 49628245 G C MAPK8 Missense_Mutation p.K166N 0.24 deleterious(0) probably_damaging(0.998) TCGA-85-A4CL-01 10 50678891 50678891 T C ERCC6 Missense_Mutation p.R1039G 0.22 deleterious(0.01) benign(0.017) TCGA-85-A4CL-01 10 50916774 50916774 C G C10orf53 3'UTR 0.60 TCGA-85-A4CL-01 10 61832958 61832958 C T ANK3 Missense_Mutation p.E2561K 0.23 probably_damaging(0.956) TCGA-85-A4CL-01 10 67748499 67748499 G A CTNNA3 Missense_Mutation p.S739L 0.39 deleterious(0) unknown(0) TCGA-85-A4CL-01 10 70696752 70696752 G A DDX50 Silent p.L552L 0.10 TCGA-85-A4CL-01 10 71005967 71005968 AC T HKDC1 Frame_Shift_Del p.R337Gfs*58 0.19 TCGA-85-A4CL-01 10 76737079 76737079 G A KAT6B Missense_Mutation p.E667K 0.27 benign(0.191) TCGA-85-A4CL-01 10 7745375 7745375 G A ITIH2 5'UTR 0.08 TCGA-85-A4CL-01 10 82363423 82363423 C G SH2D4B Missense_Mutation p.I244M 0.26 deleterious(0.03) probably_damaging(0.94) TCGA-85-A4CL-01 10 84118591 84118591 T A NRG3 Missense_Mutation p.I307N 0.27 deleterious(0) probably_damaging(0.952) TCGA-85-A4CL-01 10 84744918 84744918 G A NRG3 Missense_Mutation p.E550K 0.23 tolerated(0.24) possibly_damaging(0.547) TCGA-85-A4CL-01 10 859039 859039 C G LARP4B Missense_Mutation p.E682Q 0.30 tolerated(0.11) possibly_damaging(0.833) TCGA-85-A4CL-01 10 86198331 86198331 C G CCSER2 Missense_Mutation p.F644L 0.11 tolerated(0.14) benign(0.384) TCGA-85-A4CL-01 10 87484200 87484200 C T GRID1 Silent p.V589V 0.30 TCGA-85-A4CL-01 10 88768603 88768603 A G RP11-96C23.10 3'Flank 0.37 TCGA-85-A4CL-01 10 88820525 88820525 C T GLUD1 Missense_Mutation p.E373K 0.33 tolerated(0.26) benign(0.359) TCGA-85-A4CL-01 10 89312183 89312183 C - MINPP1 Frame_Shift_Del p.S472Vfs*6 0.27 TCGA-85-A4CL-01 10 91099869 91099869 C G IFIT3 Nonsense_Mutation p.S486* 0.21 TCGA-85-A4CL-01 10 91498148 91498148 G A KIF20B Missense_Mutation p.E1144K 0.16 tolerated(0.07) benign(0.073) TCGA-85-A4CL-01 10 93741483 93741483 G C BTAF1 Missense_Mutation p.L613F 0.40 deleterious(0.03) possibly_damaging(0.847) TCGA-85-A4CL-01 10 97604375 97604375 C A ENTPD1 Missense_Mutation p.L198M 0.26 tolerated(0.12) benign(0.324) TCGA-85-A4CL-01 10 98087340 98087340 G A DNTT Missense_Mutation p.M330I 0.30 tolerated(0.24) benign(0.004) TCGA-85-A4CL-01 11 101832661 101832661 G C KIAA1377 Missense_Mutation p.D299H 0.26 deleterious(0.03) probably_damaging(0.975) TCGA-85-A4CL-01 11 103074498 103074498 C T DYNC2H1 Silent p.F2768F 0.44 TCGA-85-A4CL-01 11 105880650 105880650 C A MSANTD4 Missense_Mutation p.R217L 0.17 deleterious(0.03) benign(0.048) TCGA-85-A4CL-01 11 10626074 10626074 A T MRVI1 Missense_Mutation p.S541T 0.26 deleterious(0.01) probably_damaging(0.993) TCGA-85-A4CL-01 11 11454228 11454228 C G GALNT18 Missense_Mutation p.E179Q 0.37 tolerated(0.11) benign(0.001) TCGA-85-A4CL-01 11 117859119 117859119 G A IL10RA Silent p.P30P 0.20 TCGA-85-A4CL-01 11 119002326 119002326 G A HINFP Missense_Mutation p.D165N 0.26 tolerated(0.44) benign(0.007) TCGA-85-A4CL-01 11 119027673 119027673 G A ABCG4 Silent p.K339K 0.20 TCGA-85-A4CL-01 11 120312907 120312907 C G ARHGEF12 Nonsense_Mutation p.S433* 0.18 TCGA-85-A4CL-01 11 120322337 120322337 G A ARHGEF12 Missense_Mutation p.E654K 0.10 deleterious(0.05) benign(0.22) TCGA-85-A4CL-01 11 123894333 123894333 T A OR10G9 Missense_Mutation p.V205E 0.28 deleterious(0) probably_damaging(0.931) TCGA-85-A4CL-01 11 124622058 124622058 G C VSIG2 5'UTR 0.40 TCGA-85-A4CL-01 11 125267793 125267793 G C PKNOX2 Silent p.L141L 0.33 TCGA-85-A4CL-01 11 126215626 126215626 G A DCPS 3'UTR 0.27 TCGA-85-A4CL-01 11 128851407 128851407 C T ARHGAP32 Missense_Mutation p.E548K 0.20 deleterious(0) possibly_damaging(0.908) TCGA-85-A4CL-01 11 22747949 22747949 G A GAS2 Missense_Mutation p.E127K 0.21 deleterious(0) possibly_damaging(0.697) TCGA-85-A4CL-01 11 32953392 32953392 C T QSER1 Silent p.F67F 0.38 TCGA-85-A4CL-01 11 32954581 32954581 G A QSER1 Missense_Mutation p.E464K 0.29 deleterious(0.04) benign(0.003) TCGA-85-A4CL-01 11 46772673 46772673 G C CKAP5 Missense_Mutation p.R1819G 0.25 tolerated(0.15) benign(0.006) TCGA-85-A4CL-01 11 51411523 51411523 C T OR4A5 Missense_Mutation p.M291I 0.23 tolerated_low_confidence(0.16) benign(0.016) TCGA-85-A4CL-01 11 5345007 5345007 C A OR51B2 Missense_Mutation p.R174L 0.21 deleterious(0) benign(0.072) TCGA-85-A4CL-01 11 55541509 55541509 G T OR5D13 Missense_Mutation p.R199M 0.28 tolerated(0.69) benign(0) TCGA-85-A4CL-01 11 55655552 55655552 G A TRIM51 Silent p.Q184Q 0.20 TCGA-85-A4CL-01 11 56380441 56380441 C T OR5M1 Missense_Mutation p.A180T 0.33 tolerated(0.22) probably_damaging(1) TCGA-85-A4CL-01 11 57004110 57004110 G A APLNR Silent p.L123L 0.21 TCGA-85-A4CL-01 11 57970976 57970976 G T OR1S2 Silent p.L226L 0.39 TCGA-85-A4CL-01 11 58125596 58125596 C T OR5B17 3'Flank 0.32 TCGA-85-A4CL-01 11 58979280 58979280 G A MPEG1 Silent p.L353L 0.10 TCGA-85-A4CL-01 11 5968677 5968677 C A OR56A3 Missense_Mutation p.P34H 0.30 deleterious(0) possibly_damaging(0.896) TCGA-85-A4CL-01 11 59807988 59807988 A T OOSP2 Missense_Mutation p.N19I 0.28 tolerated(0.09) possibly_damaging(0.466) TCGA-85-A4CL-01 11 62297944 62297944 C G AHNAK Missense_Mutation p.E1315D 0.17 benign(0.109) TCGA-85-A4CL-01 11 62327798 62327798 G C EEF1G Missense_Mutation p.P329R 0.30 deleterious(0) possibly_damaging(0.908) TCGA-85-A4CL-01 11 62433266 62433266 C G METTL12 5'UTR 0.21 TCGA-85-A4CL-01 11 639948 639948 C T DRD4 Silent p.R233R 0.47 TCGA-85-A4CL-01 11 6461724 6461724 C T HPX Missense_Mutation p.D63N 0.26 tolerated(0.07) benign(0.282) TCGA-85-A4CL-01 11 65272816 65272816 C T MALAT1 RNA 0.32 TCGA-85-A4CL-01 11 65293412 65293412 C T SCYL1 Silent p.V91V 0.29 TCGA-85-A4CL-01 11 65417329 65417329 C G SIPA1 Missense_Mutation p.I913M 0.34 deleterious(0) probably_damaging(0.949) TCGA-85-A4CL-01 11 65417904 65417904 C G SIPA1 Missense_Mutation p.S979C 0.45 tolerated(0.06) benign(0.013) TCGA-85-A4CL-01 11 66190012 66190012 G T NPAS4 Missense_Mutation p.A140S 0.29 tolerated(1) benign(0.006) TCGA-85-A4CL-01 11 70130068 70130068 C G PPFIA1 Intron 0.29 TCGA-85-A4CL-01 11 71212360 71212360 G C NADSYN1 Missense_Mutation p.E695Q 0.31 tolerated(0.06) benign(0.045) TCGA-85-A4CL-01 11 71238750 71238750 G C KRTAP5-7 Missense_Mutation p.G135A 0.35 tolerated_low_confidence(1) unknown(0) TCGA-85-A4CL-01 11 71276910 71276910 G T KRTAP5-10 Missense_Mutation p.G93C 0.12 unknown(0) TCGA-85-A4CL-01 11 71715079 71715079 G C NUMA1 Missense_Mutation p.L2064V 0.34 probably_damaging(0.999) TCGA-85-A4CL-01 11 72040794 72040794 C T CLPB Missense_Mutation p.R307Q 0.13 tolerated(0.08) benign(0.018) TCGA-85-A4CL-01 11 73785380 73785380 C G C2CD3 Silent p.L1623L 0.24 TCGA-85-A4CL-01 11 73785391 73785391 C T C2CD3 Missense_Mutation p.E1620K 0.28 tolerated(0.1) benign(0.02) TCGA-85-A4CL-01 11 74800633 74800633 G A OR2AT4 Silent p.L42L 0.28 TCGA-85-A4CL-01 11 78369020 78369020 C G TENM4 3'UTR 0.07 TCGA-85-A4CL-01 11 78369325 78369325 C G TENM4 Missense_Mutation p.Q2696H 0.10 deleterious(0) probably_damaging(0.98) TCGA-85-A4CL-01 11 792964 792964 C G SLC25A22 Missense_Mutation p.E106D 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-85-A4CL-01 11 82642804 82642804 G C C11orf82 Missense_Mutation p.D142H 0.31 tolerated(0.06) possibly_damaging(0.679) TCGA-85-A4CL-01 11 86662217 86662217 C T FZD4 Silent p.V527V 0.18 TCGA-85-A4CL-01 11 87032312 87032312 C T TMEM135 Silent p.F438F 0.38 TCGA-85-A4CL-01 12 100042370 100042370 C T FAM71C Silent p.L140L 0.27 TCGA-85-A4CL-01 12 102307955 102307955 T C DRAM1 Missense_Mutation p.I175T 0.24 deleterious(0.01) possibly_damaging(0.752) TCGA-85-A4CL-01 12 104136293 104136293 G A STAB2 Missense_Mutation p.E1998K 0.28 deleterious(0.01) probably_damaging(0.993) TCGA-85-A4CL-01 12 109660694 109660694 C T ACACB Nonsense_Mutation p.Q1257* 0.19 TCGA-85-A4CL-01 12 110013877 110013877 C T MVK Silent p.L51L 0.32 TCGA-85-A4CL-01 12 111734333 111734333 G T CUX2 Missense_Mutation p.A232S 0.45 tolerated(0.34) benign(0.214) TCGA-85-A4CL-01 12 11174664 11174664 C T TAS2R19 Silent p.R169R 0.37 TCGA-85-A4CL-01 12 116429625 116429625 C A MED13L Missense_Mutation p.R1045L 0.30 deleterious(0.01) unknown(0) TCGA-85-A4CL-01 12 117665373 117665373 G C NOS1 Missense_Mutation p.S1194C 0.27 deleterious(0) probably_damaging(0.999) TCGA-85-A4CL-01 12 122992908 122992908 G A RSRC2 Nonsense_Mutation p.Q298* 0.31 TCGA-85-A4CL-01 12 123341225 123341225 G A HIP1R Silent p.K524K 0.33 TCGA-85-A4CL-01 12 124420102 124420102 C T DNAH10 3'UTR 0.19 TCGA-85-A4CL-01 12 124829479 124829479 C T NCOR2 Missense_Mutation p.D1460N 0.38 probably_damaging(0.922) TCGA-85-A4CL-01 12 130842033 130842033 G T PIWIL1 Missense_Mutation p.V534L 0.14 tolerated(0.1) benign(0.164) TCGA-85-A4CL-01 12 132241033 132241033 G A SFSWAP Missense_Mutation p.E522K 0.27 deleterious(0.04) probably_damaging(0.996) TCGA-85-A4CL-01 12 132505641 132505641 C G EP400 Missense_Mutation p.Q1489E 0.33 unknown(0) TCGA-85-A4CL-01 12 14804899 14804899 C T GUCY2C Silent p.L533L 0.30 TCGA-85-A4CL-01 12 20792805 20792805 T G PDE3A Missense_Mutation p.M722R 0.29 deleterious(0) benign(0.379) TCGA-85-A4CL-01 12 21918938 21918938 C T KCNJ8 Missense_Mutation p.E332K 0.31 tolerated(1) benign(0.233) TCGA-85-A4CL-01 12 39096695 39096695 C T CPNE8 Missense_Mutation p.D315N 0.06 deleterious(0.02) probably_damaging(0.959) TCGA-85-A4CL-01 12 39155955 39155955 G A CPNE8 Silent p.F213F 0.28 TCGA-85-A4CL-01 12 40677681 40677681 G A LRRK2 Missense_Mutation p.C749Y 0.27 deleterious(0) possibly_damaging(0.841) TCGA-85-A4CL-01 12 40714926 40714926 G T LRRK2 Missense_Mutation p.M1702I 0.31 tolerated(0.14) probably_damaging(0.985) TCGA-85-A4CL-01 12 41422973 41422973 G A CNTN1 Missense_Mutation p.A978T 0.28 tolerated(0.27) possibly_damaging(0.826) TCGA-85-A4CL-01 12 43826208 43826208 G T ADAMTS20 Missense_Mutation p.H999N 0.38 tolerated(0.5) possibly_damaging(0.457) TCGA-85-A4CL-01 12 49089908 49089908 G C CCNT1 Missense_Mutation p.P194A 0.33 tolerated(0.15) benign(0.033) TCGA-85-A4CL-01 12 49854719 49854719 G C SPATS2 5'UTR 0.58 TCGA-85-A4CL-01 12 50185781 50185781 C T NCKAP5L Silent p.T1282T 0.50 TCGA-85-A4CL-01 12 51663041 51663041 G C SMAGP Missense_Mutation p.P8A 0.31 deleterious(0.05) benign(0.179) TCGA-85-A4CL-01 12 54348888 54348888 G C HOXC12 Missense_Mutation p.E59Q 0.17 tolerated(0.18) probably_damaging(0.931) TCGA-85-A4CL-01 12 55759046 55759046 C A OR6C75 Missense_Mutation p.P51H 0.18 tolerated_low_confidence(0.11) benign(0.004) TCGA-85-A4CL-01 12 56078801 56078801 G T ITGA7 3'UTR 0.19 TCGA-85-A4CL-01 12 56234584 56234584 C G MMP19 Silent p.L129L 0.33 TCGA-85-A4CL-01 12 56398071 56398071 G C SUOX Missense_Mutation p.D300H 0.36 deleterious(0) possibly_damaging(0.908) TCGA-85-A4CL-01 12 56648646 56648646 C G ANKRD52 Intron 0.19 TCGA-85-A4CL-01 12 56661100 56661100 G A COQ10A Intron 0.44 TCGA-85-A4CL-01 12 57496079 57496079 G C STAT6 Missense_Mutation p.F502L 0.29 deleterious(0) probably_damaging(0.998) TCGA-85-A4CL-01 12 57537551 57537551 C A LRP1 Missense_Mutation p.Q140K 0.23 benign(0.05) TCGA-85-A4CL-01 12 57969896 57969896 G A KIF5A Missense_Mutation p.D684N 0.32 tolerated(0.07) benign(0.107) TCGA-85-A4CL-01 12 57970069 57970069 G A KIF5A Silent p.Q702Q 0.30 TCGA-85-A4CL-01 12 6231927 6231927 T A VWF Intron 0.12 TCGA-85-A4CL-01 12 6231930 6231930 C G VWF Intron 0.11 TCGA-85-A4CL-01 12 6499400 6499400 C T LTBR Silent p.L308L 0.08 TCGA-85-A4CL-01 12 6602400 6602400 G T MRPL51 5'UTR 0.24 TCGA-85-A4CL-01 12 66717831 66717831 C G HELB Nonsense_Mutation p.S789* 0.27 TCGA-85-A4CL-01 12 6979546 6979546 G A TPI1 Silent p.%3D 0.22 TCGA-85-A4CL-01 12 6979856 6979856 G C TPI1 3'UTR 0.33 TCGA-85-A4CL-01 12 6979910 6979910 G C TPI1 3'UTR 0.25 TCGA-85-A4CL-01 12 72028515 72028515 C T ZFC3H1 Missense_Mutation p.E777K 0.29 deleterious(0) probably_damaging(0.987) TCGA-85-A4CL-01 12 7260873 7260873 G - C1RL Frame_Shift_Del p.Q92Rfs*46 0.15 TCGA-85-A4CL-01 12 73014967 73014967 A C TRHDE Missense_Mutation p.Q805P 0.21 tolerated(0.5) benign(0.011) TCGA-85-A4CL-01 12 73014969 73014969 G T TRHDE Missense_Mutation p.A806S 0.21 tolerated(0.74) benign(0.108) TCGA-85-A4CL-01 12 80623104 80623104 C T OTOGL Missense_Mutation p.S177L 0.28 tolerated(0.13) possibly_damaging(0.606) TCGA-85-A4CL-01 12 8671636 8671636 G C CLEC4D Missense_Mutation p.W88C 0.41 deleterious(0) probably_damaging(1) TCGA-85-A4CL-01 12 88522773 88522773 C G CEP290 Missense_Mutation p.E298Q 0.33 probably_damaging(0.959) TCGA-85-A4CL-01 13 100515251 100515251 G A CLYBL Missense_Mutation p.D149N 0.11 tolerated(0.12) benign(0.084) TCGA-85-A4CL-01 13 102105282 102105282 G C ITGBL1 Missense_Mutation p.R33T 0.26 deleterious_low_confidence(0.01) benign(0.034) TCGA-85-A4CL-01 13 103449243 103449243 C G KDELC1 Missense_Mutation p.R100T 0.31 deleterious(0) probably_damaging(1) TCGA-85-A4CL-01 13 108518068 108518068 C T FAM155A Missense_Mutation p.E293K 0.24 tolerated(0.19) benign(0.005) TCGA-85-A4CL-01 13 111091012 111091012 G A COL4A2 Silent p.L303L 0.05 TCGA-85-A4CL-01 13 113803471 113803471 G A F10 Silent p.E369E 0.22 TCGA-85-A4CL-01 13 114782711 114782711 A G RASA3 Splice_Site p.X402_splice 0.32 TCGA-85-A4CL-01 13 23915537 23915537 G A SACS Silent p.V826V 0.21 TCGA-85-A4CL-01 13 24864861 24864861 C T SPATA13 Silent p.L973L 0.31 TCGA-85-A4CL-01 13 25435487 25435487 C T RNF17 Nonsense_Mutation p.Q1286* 0.25 TCGA-85-A4CL-01 13 28608328 28608328 T C FLT3 Silent p.L576L 0.26 TCGA-85-A4CL-01 13 28980006 28980006 C T FLT1 Missense_Mutation p.E488K 0.40 tolerated(0.28) benign(0.02) TCGA-85-A4CL-01 13 33687009 33687009 C T STARD13 Missense_Mutation p.E781K 0.26 deleterious(0) probably_damaging(1) TCGA-85-A4CL-01 13 37586410 37586410 G C SUPT20H Missense_Mutation p.Q673E 0.27 deleterious(0.03) benign(0.304) TCGA-85-A4CL-01 13 38145539 38145539 C T POSTN Missense_Mutation p.E716K 0.34 tolerated_low_confidence(0.12) benign(0.217) TCGA-85-A4CL-01 13 39622135 39622135 C T NHLRC3 3'UTR 0.29 TCGA-85-A4CL-01 13 43896586 43896586 C G ENOX1 Missense_Mutation p.E399Q 0.40 deleterious(0) probably_damaging(0.995) TCGA-85-A4CL-01 13 46538147 46538147 G C ZC3H13 Missense_Mutation p.S1502C 0.19 unknown(0) TCGA-85-A4CL-01 13 47469802 47469802 C T HTR2A Silent p.L80L 0.31 TCGA-85-A4CL-01 13 50062491 50062491 G T SETDB2 Missense_Mutation p.D560Y 0.30 deleterious(0.03) probably_damaging(0.981) TCGA-85-A4CL-01 13 73636341 73636341 G C KLF5 Missense_Mutation p.E202Q 0.31 tolerated(0.5) benign(0.094) TCGA-85-A4CL-01 13 94958289 94958289 C T GPC6 Missense_Mutation p.S355L 0.31 tolerated(0.06) possibly_damaging(0.876) TCGA-85-A4CL-01 14 20666396 20666396 C A OR11G2 Missense_Mutation p.P301Q 0.27 tolerated(0.17) benign(0.016) TCGA-85-A4CL-01 14 20979117 20979117 G A RNASE10 Missense_Mutation p.G163R 0.24 deleterious(0.02) probably_damaging(0.943) TCGA-85-A4CL-01 14 22038583 22038583 C A OR10G3 Missense_Mutation p.C98F 0.29 deleterious(0) probably_damaging(0.999) TCGA-85-A4CL-01 14 33836455 33836455 T A NPAS3 Nonsense_Mutation p.L150* 0.43 TCGA-85-A4CL-01 14 50360742 50360742 C T ARF6 Silent p.I96I 0.10 TCGA-85-A4CL-01 14 50583054 50583054 C G VCPKMT Missense_Mutation p.E73Q 0.50 tolerated(0.07) probably_damaging(0.927) TCGA-85-A4CL-01 14 52781926 52781926 C G PTGER2 Silent p.L220L 0.30 TCGA-85-A4CL-01 14 55510560 55510560 G C SOCS4 Missense_Mutation p.Q267H 0.47 tolerated(0.07) benign(0.007) TCGA-85-A4CL-01 14 64882095 64882095 C G MTHFD1 Missense_Mutation p.S87C 0.47 deleterious(0) possibly_damaging(0.558) TCGA-85-A4CL-01 14 78043176 78043176 G C SPTLC2 Missense_Mutation p.Q189E 0.47 tolerated(0.08) benign(0.001) TCGA-85-A4CL-01 14 88893029 88893029 G A SPATA7 Missense_Mutation p.E276K 0.12 deleterious(0.02) possibly_damaging(0.773) TCGA-85-A4CL-01 14 95036033 95036033 G A SERPINA4 3'UTR 0.56 TCGA-85-A4CL-01 15 100340416 100340416 G A DNM1P46 RNA 0.11 TCGA-85-A4CL-01 15 101718176 101718176 G C CHSY1 Nonsense_Mutation p.S609* 0.19 TCGA-85-A4CL-01 15 102346039 102346039 G C OR4F6 Silent p.L39L 0.26 TCGA-85-A4CL-01 15 20710716 20710716 C A HERC2P3 RNA 0.23 TCGA-85-A4CL-01 15 22332538 22332538 T G RP11-69H14.6 RNA 0.18 TCGA-85-A4CL-01 15 22473104 22473104 C A IGHV4OR15-8 Missense_Mutation p.W56L 0.12 deleterious(0) probably_damaging(1) TCGA-85-A4CL-01 15 23889721 23889721 C G MAGEL2 Missense_Mutation p.E454Q 0.21 tolerated(0.4) benign(0.354) TCGA-85-A4CL-01 15 25227128 25227128 G A SNRPN 3'Flank 0.19 TCGA-85-A4CL-01 15 25479469 25479469 G A SNORD115-35 RNA 0.21 TCGA-85-A4CL-01 15 28493875 28493875 C A HERC2 Missense_Mutation p.A1020S 0.29 benign(0.039) TCGA-85-A4CL-01 15 34168167 34168167 C G AVEN Missense_Mutation p.E159Q 0.26 deleterious(0.01) probably_damaging(0.986) TCGA-85-A4CL-01 15 34549843 34549843 A G SLC12A6 Silent p.C230C 0.23 TCGA-85-A4CL-01 15 41767772 41767772 G C RTF1 Missense_Mutation p.E446Q 0.48 tolerated(0.12) possibly_damaging(0.626) TCGA-85-A4CL-01 15 42041375 42041375 C T MGA Missense_Mutation p.S1857L 0.08 tolerated(0.13) probably_damaging(0.997) TCGA-85-A4CL-01 15 43478385 43478385 C T CCNDBP1 Missense_Mutation p.T68M 0.31 deleterious(0.01) probably_damaging(0.99) TCGA-85-A4CL-01 15 43687802 43687802 C T TUBGCP4 Silent p.L363L 0.42 TCGA-85-A4CL-01 15 45968491 45968491 G C SQRDL Missense_Mutation p.E283Q 0.46 tolerated(0.07) possibly_damaging(0.744) TCGA-85-A4CL-01 15 48431192 48431192 G A SLC24A5 Missense_Mutation p.E300K 0.31 tolerated(0.08) benign(0.028) TCGA-85-A4CL-01 15 59813460 59813460 A T FAM81A Silent p.T330T 0.31 TCGA-85-A4CL-01 15 59961104 59961104 C G BNIP2 Missense_Mutation p.E415Q 0.23 deleterious(0) probably_damaging(0.962) TCGA-85-A4CL-01 15 67709317 67709317 C G IQCH Missense_Mutation p.Q716E 0.23 deleterious(0.02) possibly_damaging(0.881) TCGA-85-A4CL-01 15 68583377 68583377 G A FEM1B Missense_Mutation p.E561K 0.22 tolerated(0.05) benign(0.3) TCGA-85-A4CL-01 15 68623323 68623323 G A ITGA11 Silent p.L633L 0.24 TCGA-85-A4CL-01 15 72502799 72502799 C G PKM Missense_Mutation p.K89N 0.33 tolerated(0.22) benign(0.004) TCGA-85-A4CL-01 15 82444381 82444381 C G EFTUD1 Missense_Mutation p.G805A 0.09 tolerated(0.9) benign(0.001) TCGA-85-A4CL-01 15 83499823 83499823 C T WHAMM Missense_Mutation p.S705L 0.19 tolerated(0.2) benign(0.001) TCGA-85-A4CL-01 15 84527554 84527554 G C ADAMTSL3 Missense_Mutation p.R255P 0.18 deleterious(0) probably_damaging(0.998) TCGA-85-A4CL-01 15 89074927 89074927 G A DET1 Missense_Mutation p.H15Y 0.22 tolerated(0.18) benign(0.026) TCGA-85-A4CL-01 15 89858615 89858615 G C FANCI Missense_Mutation p.E1307Q 0.16 tolerated(0.34) benign(0.031) TCGA-85-A4CL-01 16 11001839 11001839 C T CIITA Silent p.P830P 0.57 TCGA-85-A4CL-01 16 17228575 17228575 G A XYLT1 Silent p.T594T 0.30 TCGA-85-A4CL-01 16 20696560 20696560 G A ACSM1 Nonsense_Mutation p.R120* 0.29 TCGA-85-A4CL-01 16 20931443 20931443 G C LYRM1 Splice_Site p.X54_splice 0.34 TCGA-85-A4CL-01 16 23226561 23226561 C T SCNN1G Missense_Mutation p.A574V 0.33 tolerated(0.06) benign(0.051) TCGA-85-A4CL-01 16 23598630 23598630 C G NDUFAB1 Missense_Mutation p.R60T 0.12 tolerated(0.31) benign(0.001) TCGA-85-A4CL-01 16 28898537 28898537 C A ATP2A1 Missense_Mutation p.T191K 0.24 deleterious(0.02) possibly_damaging(0.633) TCGA-85-A4CL-01 16 30583591 30583591 C T ZNF688 5'UTR 0.11 TCGA-85-A4CL-01 16 31501655 31501655 C G SLC5A2 Silent p.L606L 0.15 TCGA-85-A4CL-01 16 31734011 31734011 C G ZNF720 Nonsense_Mutation p.S23* 0.42 TCGA-85-A4CL-01 16 48130804 48130804 G C ABCC12 Silent p.L1016L 0.29 TCGA-85-A4CL-01 16 4925233 4925233 C G UBN1 Missense_Mutation p.S941C 0.11 deleterious(0) possibly_damaging(0.599) TCGA-85-A4CL-01 16 51173736 51173736 G C SALL1 Silent p.P799P 0.33 TCGA-85-A4CL-01 16 54319099 54319099 C G IRX3 Missense_Mutation p.E232Q 0.33 tolerated(0.2) benign(0.016) TCGA-85-A4CL-01 16 67300074 67300074 A G SLC9A5 Missense_Mutation p.I722V 0.31 deleterious(0.02) probably_damaging(0.965) TCGA-85-A4CL-01 16 67942979 67942979 C T PSKH1 Silent p.F109F 0.27 TCGA-85-A4CL-01 16 70721963 70721963 C G VAC14 Missense_Mutation p.Q739H 0.29 tolerated(0.09) benign(0.116) TCGA-85-A4CL-01 16 77359897 77359897 C G ADAMTS18 Missense_Mutation p.R633P 0.17 deleterious(0) probably_damaging(0.997) TCGA-85-A4CL-01 16 775459 775459 C G CCDC78 Missense_Mutation p.R130T 0.45 tolerated(0.51) benign(0.14) TCGA-85-A4CL-01 16 79633754 79633754 G C MAF Missense_Mutation p.P16A 0.11 deleterious(0) unknown(0) TCGA-85-A4CL-01 16 81151077 81151077 C G PKD1L2 RNA 0.43 TCGA-85-A4CL-01 16 81279203 81279203 G C BCMO1 Missense_Mutation p.R63T 0.25 tolerated(0.07) benign(0.41) TCGA-85-A4CL-01 16 81914529 81914529 C G PLCG2 Missense_Mutation p.F221L 0.20 tolerated(0.19) probably_damaging(0.96) TCGA-85-A4CL-01 16 83520256 83520256 G A CDH13 Missense_Mutation p.R366Q 0.27 deleterious(0) probably_damaging(0.966) TCGA-85-A4CL-01 16 84089656 84089656 C T MBTPS1 Silent p.V972V 0.23 TCGA-85-A4CL-01 16 84188402 84188402 C G DNAAF1 Silent p.L191L 0.24 TCGA-85-A4CL-01 16 88781608 88781608 G A CTU2 Silent p.E499E 0.18 TCGA-85-A4CL-01 16 88923573 88923573 C G TRAPPC2L Missense_Mutation p.I5M 0.09 deleterious(0) benign(0.044) TCGA-85-A4CL-01 16 89167500 89167500 C G ACSF3 Silent p.V137V 0.34 TCGA-85-A4CL-01 16 90002234 90002234 G C TUBB3 3'UTR 0.26 TCGA-85-A4CL-01 17 10364348 10364348 G A MYH4 Silent p.F344F 0.36 TCGA-85-A4CL-01 17 11837311 11837311 G A DNAH9 Missense_Mutation p.E4138K 0.38 benign(0.098) TCGA-85-A4CL-01 17 1399120 1399120 G C INPP5K Missense_Mutation p.I448M 0.39 deleterious_low_confidence(0.04) benign(0.048) TCGA-85-A4CL-01 17 18257028 18257028 G C SHMT1 Missense_Mutation p.S67C 0.43 deleterious(0.01) possibly_damaging(0.604) TCGA-85-A4CL-01 17 2201216 2201216 C T SMG6 Missense_Mutation p.D661N 0.47 deleterious(0.04) probably_damaging(0.992) TCGA-85-A4CL-01 17 27042273 27042273 C G RAB34 Silent p.L208L 0.47 TCGA-85-A4CL-01 17 27286484 27286484 C T SEZ6 Missense_Mutation p.C593Y 0.21 deleterious(0) probably_damaging(1) TCGA-85-A4CL-01 17 31322633 31322633 C T SPACA3 Silent p.L81L 0.36 TCGA-85-A4CL-01 17 32964735 32964735 C T TMEM132E Silent p.L813L 0.18 TCGA-85-A4CL-01 17 33772187 33772187 T A SLFN13 Silent p.P171P 0.34 TCGA-85-A4CL-01 17 34236407 34236407 C G AC015849.16 RNA 0.28 TCGA-85-A4CL-01 17 3489152 3489152 G C SHPK Silent p.V431V 0.38 TCGA-85-A4CL-01 17 35549121 35549121 G A ACACA Silent p.L1442L 0.29 TCGA-85-A4CL-01 17 35879164 35879164 G C SYNRG Nonsense_Mutation p.S1275* 0.25 TCGA-85-A4CL-01 17 36868997 36868997 G T MLLT6 Silent p.S258S 0.26 TCGA-85-A4CL-01 17 37826612 37826612 C G PNMT Missense_Mutation p.F273L 0.26 tolerated(0.05) probably_damaging(0.999) TCGA-85-A4CL-01 17 38249440 38249440 C G NR1D1 Missense_Mutation p.E581Q 0.19 deleterious(0.01) probably_damaging(0.979) TCGA-85-A4CL-01 17 38926233 38926233 C G KRT26 Missense_Mutation p.E275Q 0.19 deleterious(0.02) benign(0.383) TCGA-85-A4CL-01 17 38938383 38938383 C G KRT27 Missense_Mutation p.E121D 0.06 tolerated(0.19) probably_damaging(0.998) TCGA-85-A4CL-01 17 39092489 39092489 C G KRT23 Missense_Mutation p.E123Q 0.29 tolerated(0.28) probably_damaging(1) TCGA-85-A4CL-01 17 39119876 39119876 C G KRT39 Intron 0.08 TCGA-85-A4CL-01 17 39846394 39846394 C G EIF1 Missense_Mutation p.Q84E 0.05 deleterious(0) possibly_damaging(0.658) TCGA-85-A4CL-01 17 39883608 39883608 C T HAP1 Intron 0.50 TCGA-85-A4CL-01 17 40714365 40714365 C T COASY Intron 0.27 TCGA-85-A4CL-01 17 40714604 40714604 C T COASY Intron 0.26 TCGA-85-A4CL-01 17 40714609 40714609 C T COASY Intron 0.28 TCGA-85-A4CL-01 17 40716744 40716744 C T COASY Silent p.P384P 0.27 TCGA-85-A4CL-01 17 40765019 40765019 G C TUBG1 Missense_Mutation p.M178I 0.15 tolerated(0.29) benign(0.001) TCGA-85-A4CL-01 17 40818842 40818842 C G TUBG2 3'UTR 0.30 TCGA-85-A4CL-01 17 40948754 40948754 G A WNK4 3'UTR 0.22 TCGA-85-A4CL-01 17 41158783 41158783 C T IFI35 5'UTR 0.35 TCGA-85-A4CL-01 17 42328659 42328659 G C SLC4A1 Missense_Mutation p.I841M 0.22 deleterious(0.05) benign(0.081) TCGA-85-A4CL-01 17 42335888 42335888 G T SLC4A1 Missense_Mutation p.P327H 0.53 tolerated(0.06) benign(0.064) TCGA-85-A4CL-01 17 42340267 42340267 G A SLC4A1 5'UTR 0.43 TCGA-85-A4CL-01 17 42478427 42478427 C G GPATCH8 Missense_Mutation p.D340H 0.04 tolerated(0.08) probably_damaging(0.974) TCGA-85-A4CL-01 17 42635248 42635248 G A FZD2 Silent p.T64T 0.22 TCGA-85-A4CL-01 17 42850721 42850721 G A ADAM11 Silent p.L306L 0.24 TCGA-85-A4CL-01 17 43003610 43003610 C G KIF18B Intron 0.15 TCGA-85-A4CL-01 17 43006205 43006205 C G KIF18B Missense_Mutation p.E569Q 0.19 tolerated(0.38) possibly_damaging(0.65) TCGA-85-A4CL-01 17 43552782 43552782 C T PLEKHM1 Missense_Mutation p.E203K 0.19 deleterious(0.04) possibly_damaging(0.821) TCGA-85-A4CL-01 17 4458221 4458221 G C MYBBP1A Missense_Mutation p.L77V 0.48 deleterious(0) probably_damaging(1) TCGA-85-A4CL-01 17 44626389 44626389 C G LRRC37A2 Missense_Mutation p.S1295C 0.21 deleterious(0.02) possibly_damaging(0.533) TCGA-85-A4CL-01 17 44846078 44846078 C G WNT3 Missense_Mutation p.D226H 0.24 deleterious(0.01) benign(0.014) TCGA-85-A4CL-01 17 44846108 44846108 C G WNT3 Missense_Mutation p.E216Q 0.27 deleterious(0.02) possibly_damaging(0.456) TCGA-85-A4CL-01 17 45741624 45741624 G A KPNB1 Missense_Mutation p.E296K 0.18 deleterious(0) possibly_damaging(0.555) TCGA-85-A4CL-01 17 45891935 45891935 G A OSBPL7 Silent p.L435L 0.13 TCGA-85-A4CL-01 17 4624269 4624269 G C ARRB2 Missense_Mutation p.E410Q 0.41 deleterious(0.01) probably_damaging(0.964) TCGA-85-A4CL-01 17 4675268 4675268 C T TM4SF5 Silent p.L17L 0.19 TCGA-85-A4CL-01 17 48191742 48191742 G A SAMD14 Silent p.F295F 0.17 TCGA-85-A4CL-01 17 48604653 48604653 G A MYCBPAP Silent p.V768V 0.25 TCGA-85-A4CL-01 17 48733197 48733197 C T ABCC3 Missense_Mutation p.S17F 0.22 tolerated(0.7) possibly_damaging(0.568) TCGA-85-A4CL-01 17 4893189 4893189 A T INCA1 Missense_Mutation p.M65K 0.47 tolerated(0.17) benign(0.001) TCGA-85-A4CL-01 17 55946525 55946525 C T CUEDC1 Missense_Mutation p.E300K 0.20 tolerated(0.05) benign(0.02) TCGA-85-A4CL-01 17 57262807 57262807 G C PRR11 Missense_Mutation p.E96Q 0.29 tolerated(0.1) possibly_damaging(0.527) TCGA-85-A4CL-01 17 59469369 59469369 G A BCAS3 Silent p.L890L 0.27 TCGA-85-A4CL-01 17 59962317 59962317 C G INTS2 Missense_Mutation p.Q686H 0.44 tolerated(0.11) probably_damaging(0.921) TCGA-85-A4CL-01 17 60059578 60059579 GT - MED13 Frame_Shift_Del p.H1262Pfs*53 0.18 TCGA-85-A4CL-01 17 61775935 61775935 C G LIMD2 Missense_Mutation p.D121H 0.24 tolerated(0.05) benign(0.001) TCGA-85-A4CL-01 17 61972636 61972636 C G CSH1 Intron 0.16 TCGA-85-A4CL-01 17 62081170 62081170 G A ICAM2 Silent p.F161F 0.22 TCGA-85-A4CL-01 17 68128761 68128761 G C KCNJ16 Missense_Mutation p.R178T 0.17 deleterious(0) probably_damaging(1) TCGA-85-A4CL-01 17 71189326 71189326 G A COG1 Missense_Mutation p.E40K 0.18 deleterious(0.01) probably_damaging(0.969) TCGA-85-A4CL-01 17 73774600 73774600 C G H3F3B 3'UTR 0.17 TCGA-85-A4CL-01 17 74287485 74287485 G A QRICH2 Missense_Mutation p.S942L 0.17 tolerated(0.26) benign(0.003) TCGA-85-A4CL-01 17 74287648 74287648 G C QRICH2 Missense_Mutation p.P888A 0.20 deleterious(0.01) possibly_damaging(0.801) TCGA-85-A4CL-01 17 74733140 74733140 C T SRSF2 Missense_Mutation p.E35K 0.17 deleterious(0.03) possibly_damaging(0.543) TCGA-85-A4CL-01 17 75196746 75196746 C T SEC14L1 Missense_Mutation p.H334Y 0.26 tolerated(0.37) probably_damaging(0.999) TCGA-85-A4CL-01 17 7577142 7577142 C G TP53 Missense_Mutation p.G266R 0.50 deleterious(0.03) probably_damaging(0.999) TCGA-85-A4CL-01 17 76167718 76167718 C T SYNGR2 Silent p.S155S 0.19 TCGA-85-A4CL-01 17 76212846 76212846 G A BIRC5 Missense_Mutation p.R131K 0.20 deleterious(0.02) possibly_damaging(0.664) TCGA-85-A4CL-01 17 76968119 76968119 G C LGALS3BP Missense_Mutation p.Q433E 0.06 tolerated(1) benign(0.004) TCGA-85-A4CL-01 17 78079644 78079644 G A GAA Missense_Mutation p.E215K 0.07 tolerated(0.9) benign(0.007) TCGA-85-A4CL-01 17 79988680 79988680 G A LRRC45 Silent p.%3D 0.11 TCGA-85-A4CL-01 17 80442792 80442792 G T NARF Nonsense_Mutation p.E313* 0.05 TCGA-85-A4CL-01 18 10680295 10680295 G A PIEZO2 Missense_Mutation p.S2505F 0.35 deleterious(0.05) probably_damaging(0.988) TCGA-85-A4CL-01 18 12359936 12359936 C T AFG3L2 Missense_Mutation p.E248K 0.26 deleterious(0.04) benign(0.275) TCGA-85-A4CL-01 18 14851884 14851884 C G ANKRD30B Nonsense_Mutation p.S1195* 0.27 TCGA-85-A4CL-01 18 18567033 18567033 C T ROCK1 Missense_Mutation p.E728K 0.33 tolerated(0.44) benign(0.028) TCGA-85-A4CL-01 18 23907006 23907006 G A TAF4B Missense_Mutation p.D721N 0.26 deleterious(0) probably_damaging(1) TCGA-85-A4CL-01 18 28648058 28648058 C T DSC2 Missense_Mutation p.E877K 0.22 deleterious(0) possibly_damaging(0.869) TCGA-85-A4CL-01 18 29116184 29116184 C T DSG2 Silent p.I481I 0.33 TCGA-85-A4CL-01 18 31323472 31323472 C T ASXL3 Silent p.T1220T 0.34 TCGA-85-A4CL-01 18 32887557 32887557 C G ZNF271 RNA 0.33 TCGA-85-A4CL-01 18 33935522 33935522 G A FHOD3 Silent p.Q62Q 0.19 TCGA-85-A4CL-01 18 48510617 48510617 C G ELAC1 Missense_Mutation p.I103M 0.07 deleterious(0.01) possibly_damaging(0.467) TCGA-85-A4CL-01 18 50278687 50278687 G T DCC Missense_Mutation p.A119S 0.25 deleterious(0) probably_damaging(0.937) TCGA-85-A4CL-01 18 51888105 51888105 G A C18orf54 Missense_Mutation p.D126N 0.43 deleterious(0) probably_damaging(0.981) TCGA-85-A4CL-01 18 56056330 56056330 G A NEDD4L Missense_Mutation p.G854D 0.31 deleterious(0) probably_damaging(1) TCGA-85-A4CL-01 18 56202639 56202639 C T ALPK2 Missense_Mutation p.E1594K 0.31 tolerated(0.11) benign(0.105) TCGA-85-A4CL-01 18 56601832 56601832 G A ZNF532 Silent p.R838R 0.32 TCGA-85-A4CL-01 18 65181711 65181711 C T DSEL Silent p.Q55Q 0.23 TCGA-85-A4CL-01 18 67836148 67836148 T A RTTN Silent p.A544A 0.34 TCGA-85-A4CL-01 18 8824761 8824761 G A SOGA2 Missense_Mutation p.E1085K 0.30 tolerated(0.06) possibly_damaging(0.759) TCGA-85-A4CL-01 19 1008781 1008781 G A GRIN3B Silent p.Q877Q 0.40 TCGA-85-A4CL-01 19 1045054 1045054 G A ABCA7 Silent p.S423S 0.33 TCGA-85-A4CL-01 19 10531639 10531639 C A PDE4A Missense_Mutation p.R67S 0.36 deleterious_low_confidence(0.03) possibly_damaging(0.872) TCGA-85-A4CL-01 19 10624470 10624470 G C S1PR5 3'UTR 0.11 TCGA-85-A4CL-01 19 11918033 11918033 G T ZNF491 Missense_Mutation p.R422L 0.37 tolerated(0.61) benign(0.016) TCGA-85-A4CL-01 19 11998672 11998672 G C ZNF69 5'UTR 0.18 TCGA-85-A4CL-01 19 12739302 12739302 G C ZNF791 Missense_Mutation p.R320T 0.30 deleterious(0.03) probably_damaging(0.912) TCGA-85-A4CL-01 19 1468355 1468355 G C APC2 Missense_Mutation p.E1685D 0.38 benign(0.048) TCGA-85-A4CL-01 19 15341894 15341894 C T EPHX3 Silent p.S165S 0.39 TCGA-85-A4CL-01 19 1599501 1599501 C T UQCR11 Missense_Mutation p.D37N 0.26 deleterious(0.01) probably_damaging(0.959) TCGA-85-A4CL-01 19 17362455 17362455 G T USHBP1 Missense_Mutation p.Q620K 0.25 tolerated(0.22) benign(0.011) TCGA-85-A4CL-01 19 1818543 1818543 G A REXO1 Missense_Mutation p.S985L 0.12 deleterious(0) benign(0.058) TCGA-85-A4CL-01 19 18943057 18943057 C G UPF1 Silent p.L13L 0.06 TCGA-85-A4CL-01 19 19338800 19338800 G T NCAN Missense_Mutation p.D791Y 0.12 tolerated(0.15) benign(0.002) TCGA-85-A4CL-01 19 19339164 19339164 G T NCAN Missense_Mutation p.G912V 0.10 tolerated(0.13) benign(0.274) TCGA-85-A4CL-01 19 19359655 19359655 G T NCAN Missense_Mutation p.G1262C 0.26 deleterious(0) probably_damaging(0.965) TCGA-85-A4CL-01 19 19359656 19359656 G T NCAN Missense_Mutation p.G1262V 0.25 deleterious(0) probably_damaging(0.916) TCGA-85-A4CL-01 19 20044159 20044159 G A ZNF93 Missense_Mutation p.G132E 0.27 tolerated(0.49) benign(0.02) TCGA-85-A4CL-01 19 20135086 20135086 C T ZNF682 Missense_Mutation p.E35K 0.37 deleterious(0) benign(0.011) TCGA-85-A4CL-01 19 30164776 30164776 C T PLEKHF1 Silent p.I10I 0.11 TCGA-85-A4CL-01 19 31040011 31040011 C T ZNF536 Missense_Mutation p.S1162F 0.12 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-85-A4CL-01 19 31040330 31040330 C T ZNF536 Silent p.L1268L 0.09 TCGA-85-A4CL-01 19 31770440 31770440 C T TSHZ3 Missense_Mutation p.D87N 0.11 tolerated(0.06) probably_damaging(0.998) TCGA-85-A4CL-01 19 3179907 3179907 G C S1PR4 Missense_Mutation p.E373Q 0.29 deleterious(0.04) possibly_damaging(0.893) TCGA-85-A4CL-01 19 33617568 33617568 G C GPATCH1 Missense_Mutation p.E898D 0.04 tolerated_low_confidence(0.64) unknown(0) TCGA-85-A4CL-01 19 35758446 35758446 C T LSR Missense_Mutation p.R575W 0.19 tolerated(0.06) possibly_damaging(0.852) TCGA-85-A4CL-01 19 35843031 35843031 C T FFAR1 Silent p.L193L 0.17 TCGA-85-A4CL-01 19 35996644 35996644 G A DMKN Silent p.F370F 0.12 TCGA-85-A4CL-01 19 36231944 36231944 G A IGFLR1 Silent p.F46F 0.14 TCGA-85-A4CL-01 19 36235227 36235227 G A U2AF1L4 Silent p.V76V 0.11 TCGA-85-A4CL-01 19 36235245 36235245 G T U2AF1L4 Silent p.L70L 0.13 TCGA-85-A4CL-01 19 36235314 36235314 G A U2AF1L4 Silent p.F47F 0.15 TCGA-85-A4CL-01 19 36236856 36236856 G A PSENEN Missense_Mutation p.E9K 0.19 deleterious(0.03) possibly_damaging(0.783) TCGA-85-A4CL-01 19 36273272 36273272 C G ARHGAP33 Intron 0.15 TCGA-85-A4CL-01 19 36273671 36273671 G T ARHGAP33 Nonsense_Mutation p.E441* 0.06 TCGA-85-A4CL-01 19 36333440 36333440 C A NPHS1 Nonsense_Mutation p.E783* 0.17 TCGA-85-A4CL-01 19 36351893 36351893 G A KIRREL2 Silent p.G337G 0.14 TCGA-85-A4CL-01 19 36369844 36369844 G A APLP1 Missense_Mutation p.R568K 0.18 tolerated(0.45) benign(0.019) TCGA-85-A4CL-01 19 36370431 36370431 G T APLP1 3'UTR 0.14 TCGA-85-A4CL-01 19 36605290 36605290 C G POLR2I Missense_Mutation p.E47Q 0.14 tolerated(0.58) benign(0.234) TCGA-85-A4CL-01 19 36605749 36605749 C T POLR2I Missense_Mutation p.D4N 0.13 tolerated(0.6) benign(0) TCGA-85-A4CL-01 19 36940501 36940501 G C ZNF566 Nonsense_Mutation p.S213* 0.10 TCGA-85-A4CL-01 19 3752980 3752980 G A APBA3 Silent p.L340L 0.24 TCGA-85-A4CL-01 19 37879531 37879531 G C ZNF527 Missense_Mutation p.D194H 0.21 tolerated(0.15) possibly_damaging(0.514) TCGA-85-A4CL-01 19 38230856 38230856 G C ZNF573 Missense_Mutation p.L179V 0.08 tolerated(0.85) benign(0.007) TCGA-85-A4CL-01 19 38573136 38573136 G A SIPA1L3 Missense_Mutation p.E311K 0.11 deleterious(0) benign(0.125) TCGA-85-A4CL-01 19 38817398 38817398 G A KCNK6 Nonsense_Mutation p.W163* 0.04 TCGA-85-A4CL-01 19 39116671 39116671 G A EIF3K Missense_Mutation p.E95K 0.14 tolerated(0.3) benign(0.061) TCGA-85-A4CL-01 19 39866435 39866435 G A SAMD4B Silent p.S271S 0.67 TCGA-85-A4CL-01 19 39888408 39888408 G A MED29 3'UTR 0.24 TCGA-85-A4CL-01 19 39955584 39955584 C T SUPT5H Silent p.I257I 0.16 TCGA-85-A4CL-01 19 40376701 40376701 G C FCGBP Missense_Mutation p.I3907M 0.05 possibly_damaging(0.639) TCGA-85-A4CL-01 19 40376722 40376722 C T FCGBP Silent p.L3900L 0.06 TCGA-85-A4CL-01 19 40408324 40408324 G C FCGBP Missense_Mutation p.I1505M 0.08 probably_damaging(0.992) TCGA-85-A4CL-01 19 40589105 40589105 G C ZNF780A Missense_Mutation p.Q17E 0.16 deleterious(0.02) benign(0.109) TCGA-85-A4CL-01 19 40698104 40698104 G A MAP3K10 Missense_Mutation p.E56K 0.64 deleterious(0) probably_damaging(0.996) TCGA-85-A4CL-01 19 40724034 40724034 G A TTC9B Silent p.I85I 0.08 TCGA-85-A4CL-01 19 40873637 40873637 G C PLD3 Missense_Mutation p.D94H 0.12 tolerated(0.11) benign(0.149) TCGA-85-A4CL-01 19 41897839 41897839 C T EXOSC5 Silent p.L97L 0.12 TCGA-85-A4CL-01 19 42355764 42355764 G C DMRTC2 Nonstop_Mutation p.*368Yext*14 0.16 TCGA-85-A4CL-01 19 42485925 42485925 G A ATP1A3 Silent p.L430L 0.12 TCGA-85-A4CL-01 19 42492153 42492153 C T ATP1A3 Missense_Mutation p.A111T 0.19 deleterious(0) probably_damaging(0.998) TCGA-85-A4CL-01 19 4280112 4280112 C G SHD Missense_Mutation p.P18A 0.16 deleterious(0.03) possibly_damaging(0.763) TCGA-85-A4CL-01 19 42891308 42891308 C T CNFN Silent p.E112E 0.12 TCGA-85-A4CL-01 19 43358278 43358278 C G PSG10P RNA 0.15 TCGA-85-A4CL-01 19 43359867 43359867 C A PSG10P 5'Flank 0.17 TCGA-85-A4CL-01 19 43967835 43967835 G C LYPD3 Missense_Mutation p.L100V 0.12 tolerated(0.27) possibly_damaging(0.906) TCGA-85-A4CL-01 19 44471455 44471455 G A ZNF221 Missense_Mutation p.E601K 0.17 tolerated_low_confidence(0.06) benign(0.009) TCGA-85-A4CL-01 19 44536793 44536793 C T ZNF222 Silent p.F362F 0.15 TCGA-85-A4CL-01 19 45575338 45575338 G C ZNF296 Missense_Mutation p.L317V 0.20 tolerated(0.14) benign(0.433) TCGA-85-A4CL-01 19 45853603 45853603 C T KLC3 Missense_Mutation p.S383L 0.13 deleterious(0.02) possibly_damaging(0.743) TCGA-85-A4CL-01 19 45912234 45912234 G A CD3EAP Silent p.Q336Q 0.16 TCGA-85-A4CL-01 19 46215182 46215182 G C FBXO46 Silent p.L524L 0.24 TCGA-85-A4CL-01 19 46215245 46215245 G A FBXO46 Silent p.F503F 0.21 TCGA-85-A4CL-01 19 46506309 46506309 C T CCDC61 Silent p.Y11Y 0.24 TCGA-85-A4CL-01 19 46526234 46526234 G C PGLYRP1 Missense_Mutation p.L16V 0.20 tolerated(0.06) possibly_damaging(0.794) TCGA-85-A4CL-01 19 47030206 47030206 C T PPP5D1 Missense_Mutation p.D71N 0.21 deleterious(0.01) possibly_damaging(0.726) TCGA-85-A4CL-01 19 49079249 49079249 C T SULT2B1 Silent p.V41V 0.46 TCGA-85-A4CL-01 19 49377733 49377733 G C PPP1R15A Missense_Mutation p.E415Q 0.50 tolerated(0.16) benign(0.08) TCGA-85-A4CL-01 19 49868847 49868847 G A DKKL1 Missense_Mutation p.E89K 0.29 deleterious_low_confidence(0.04) possibly_damaging(0.487) TCGA-85-A4CL-01 19 53886917 53886917 C T ZNF525 3'UTR 0.41 TCGA-85-A4CL-01 19 54659456 54659456 G C LENG1 3'UTR 0.30 TCGA-85-A4CL-01 19 55147063 55147063 G A LILRB1 Intron 0.53 TCGA-85-A4CL-01 19 55325417 55325417 G T KIR2DL4 Missense_Mutation p.V294L 0.46 tolerated(0.05) benign(0.033) TCGA-85-A4CL-01 19 57132732 57132732 C T ZNF71 Missense_Mutation p.T26M 0.10 tolerated(0.2) benign(0) TCGA-85-A4CL-01 19 58579087 58579087 G T ZNF135 Missense_Mutation p.C436F 0.40 deleterious(0) probably_damaging(1) TCGA-85-A4CL-01 19 58850499 58850499 G A ZSCAN22 Missense_Mutation p.R428K 0.27 deleterious(0) possibly_damaging(0.702) TCGA-85-A4CL-01 19 7083647 7083647 G A ZNF557 Missense_Mutation p.M395I 0.32 deleterious(0.01) benign(0.001) TCGA-85-A4CL-01 19 7763736 7763736 G A FCER2 Silent p.I9I 0.53 TCGA-85-A4CL-01 19 8173089 8173089 C A FBN3 Missense_Mutation p.G1551V 0.26 deleterious(0) probably_damaging(0.999) TCGA-85-A4CL-01 19 8398030 8398030 C G KANK3 Missense_Mutation p.E602Q 0.47 tolerated(0.59) possibly_damaging(0.607) TCGA-85-A4CL-01 19 872055 872055 C T MED16 Missense_Mutation p.E657K 0.24 deleterious(0) possibly_damaging(0.621) TCGA-85-A4CL-01 19 9056233 9056233 C T MUC16 Missense_Mutation p.V10405I 0.29 benign(0.017) TCGA-85-A4CL-01 19 9065735 9065735 C T MUC16 Silent p.Q7237Q 0.32 TCGA-85-A4CL-01 19 9578029 9578029 G C ZNF560 Missense_Mutation p.R532G 0.20 tolerated(0.34) benign(0.022) TCGA-85-A4CL-01 19 9875614 9875614 G A ZNF846 Nonsense_Mutation p.Q5* 0.30 TCGA-85-A4CL-01 1 10155553 10155553 C G UBE4B Silent p.V82V 0.39 TCGA-85-A4CL-01 1 114308720 114308720 G C RSBN1 Nonsense_Mutation p.S764* 0.33 TCGA-85-A4CL-01 1 114523956 114523956 G A OLFML3 Silent p.L262L 0.10 TCGA-85-A4CL-01 1 120277352 120277352 C T PHGDH Silent p.F202F 0.47 TCGA-85-A4CL-01 1 1268466 1268466 G A TAS1R3 Missense_Mutation p.E481K 0.13 tolerated(0.21) benign(0.005) TCGA-85-A4CL-01 1 12856052 12856052 C T PRAMEF1 Silent p.V444V 0.19 TCGA-85-A4CL-01 1 144892210 144892210 G A PDE4DIP Intron 0.22 TCGA-85-A4CL-01 1 145538028 145538028 C G ITGA10 Missense_Mutation p.L903V 0.25 tolerated(0.09) possibly_damaging(0.795) TCGA-85-A4CL-01 1 146731511 146731511 T C CHD1L Missense_Mutation p.V172A 0.23 tolerated(0.09) benign(0.167) TCGA-85-A4CL-01 1 147090676 147090676 C T BCL9 Missense_Mutation p.P239S 0.20 tolerated(0.23) benign(0.024) TCGA-85-A4CL-01 1 149858075 149858075 G C HIST2H2BE Missense_Mutation p.S39C 0.22 deleterious_low_confidence(0.02) possibly_damaging(0.886) TCGA-85-A4CL-01 1 149904192 149904192 G A MTMR11 Missense_Mutation p.S339L 0.13 deleterious(0) possibly_damaging(0.583) TCGA-85-A4CL-01 1 150131706 150131706 G A PLEKHO1 Silent p.K406K 0.28 TCGA-85-A4CL-01 1 150259178 150259178 G A C1orf51 Missense_Mutation p.E324K 0.06 tolerated_low_confidence(0.11) benign(0.023) TCGA-85-A4CL-01 1 150967118 150967118 G C ANXA9 Silent p.L306L 0.04 TCGA-85-A4CL-01 1 151006310 151006310 C G PRUNE Missense_Mutation p.S321C 0.14 deleterious(0.03) benign(0.049) TCGA-85-A4CL-01 1 151062949 151062949 G A GABPB2 Missense_Mutation p.R59Q 0.22 tolerated(0.08) benign(0.165) TCGA-85-A4CL-01 1 152081251 152081251 T A TCHH Missense_Mutation p.Q1481L 0.18 unknown(0) TCGA-85-A4CL-01 1 152276705 152276705 C G FLG Missense_Mutation p.E3553Q 0.23 unknown(0) TCGA-85-A4CL-01 1 153659121 153659121 G C NPR1 Splice_Site p.X587_splice 0.20 TCGA-85-A4CL-01 1 154155523 154155523 C G TPM3 Intron 0.19 TCGA-85-A4CL-01 1 155023285 155023285 G A DCST1 Missense_Mutation p.E688K 0.19 tolerated(0.11) benign(0.027) TCGA-85-A4CL-01 1 155034392 155034392 G A ADAM15 Missense_Mutation p.D789N 0.23 tolerated(0.1) possibly_damaging(0.786) TCGA-85-A4CL-01 1 155154467 155154467 G C TRIM46 Silent p.L576L 0.32 TCGA-85-A4CL-01 1 155177674 155177674 C T THBS3 5'UTR 0.23 TCGA-85-A4CL-01 1 155255058 155255058 G A HCN3 Missense_Mutation p.D398N 0.19 tolerated(0.07) benign(0.072) TCGA-85-A4CL-01 1 155785628 155785628 C A GON4L Missense_Mutation p.D377Y 0.43 deleterious(0.02) probably_damaging(0.934) TCGA-85-A4CL-01 1 155870401 155870401 C A RIT1 Missense_Mutation p.K163N 0.22 tolerated(0.27) benign(0.084) TCGA-85-A4CL-01 1 156926274 156926274 C T ARHGEF11 Missense_Mutation p.E537K 0.21 tolerated(0.08) possibly_damaging(0.575) TCGA-85-A4CL-01 1 156927594 156927594 C T ARHGEF11 Missense_Mutation p.E506K 0.33 deleterious(0.03) benign(0.026) TCGA-85-A4CL-01 1 158549427 158549427 C G OR10X1 Missense_Mutation p.C88S 0.50 deleterious(0.02) probably_damaging(0.997) TCGA-85-A4CL-01 1 158906839 158906839 C G PYHIN1 Missense_Mutation p.Q47E 0.11 tolerated(0.06) benign(0.335) TCGA-85-A4CL-01 1 159163688 159163688 C G CADM3 Silent p.P217P 0.42 TCGA-85-A4CL-01 1 159170672 159170672 G T CADM3 Missense_Mutation p.G420V 0.12 deleterious(0) probably_damaging(1) TCGA-85-A4CL-01 1 159170673 159170673 G T CADM3 Silent p.G420G 0.12 TCGA-85-A4CL-01 1 159900498 159900498 G C IGSF9 Silent p.V599V 0.20 TCGA-85-A4CL-01 1 161519627 161519627 C G FCGR3A Missense_Mutation p.G3A 0.26 tolerated_low_confidence(0.48) benign(0.017) TCGA-85-A4CL-01 1 167847691 167847691 C G ADCY10 Missense_Mutation p.E467Q 0.15 deleterious(0.02) probably_damaging(0.979) TCGA-85-A4CL-01 1 170699420 170699420 C G PRRX1 Intron 0.18 TCGA-85-A4CL-01 1 171236728 171236728 C G FMO1 Missense_Mutation p.S60C 0.13 tolerated(0.13) probably_damaging(0.983) TCGA-85-A4CL-01 1 171561016 171561016 G T PRRC2C 3'UTR 0.47 TCGA-85-A4CL-01 1 171810933 171810933 C G DNM3 Missense_Mutation p.S46W 0.19 deleterious(0) probably_damaging(1) TCGA-85-A4CL-01 1 175335059 175335059 C T TNR Missense_Mutation p.E757K 0.29 deleterious(0.01) possibly_damaging(0.685) TCGA-85-A4CL-01 1 179851758 179851758 G A TOR1AIP1 Missense_Mutation p.D41N 0.12 tolerated_low_confidence(0.14) benign(0.007) TCGA-85-A4CL-01 1 179886985 179886985 G A TOR1AIP1 Missense_Mutation p.D455N 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-85-A4CL-01 1 180064987 180064987 C G CEP350 Missense_Mutation p.I2947M 0.20 benign(0.27) TCGA-85-A4CL-01 1 182025358 182025358 G A ZNF648 3'UTR 0.51 TCGA-85-A4CL-01 1 184688328 184688328 G A EDEM3 Nonsense_Mutation p.Q377* 0.06 TCGA-85-A4CL-01 1 186056717 186056718 AG - HMCN1 Frame_Shift_Del p.E3102Vfs*9 0.19 TCGA-85-A4CL-01 1 186057135 186057135 C T HMCN1 Silent p.L3145L 0.15 TCGA-85-A4CL-01 1 186291507 186291507 G A TPR Missense_Mutation p.P2135L 0.18 benign(0.272) TCGA-85-A4CL-01 1 186322861 186322861 G A TPR Nonsense_Mutation p.Q765* 0.19 TCGA-85-A4CL-01 1 18808900 18808900 G C KLHDC7A Silent p.L475L 0.17 TCGA-85-A4CL-01 1 193202188 193202188 G T CDC73 Missense_Mutation p.R407I 0.11 deleterious(0) probably_damaging(0.999) TCGA-85-A4CL-01 1 196659258 196659258 G T CFH Missense_Mutation p.G409C 0.28 deleterious(0) probably_damaging(0.996) TCGA-85-A4CL-01 1 201777692 201777692 C G NAV1 Missense_Mutation p.S1331C 0.24 deleterious(0) probably_damaging(0.999) TCGA-85-A4CL-01 1 202777383 202777383 G A KDM5B Silent p.L17L 0.09 TCGA-85-A4CL-01 1 203452963 203452963 C T PRELP Silent p.F217F 0.05 TCGA-85-A4CL-01 1 203830863 203830863 G A SNRPE Intron 0.39 TCGA-85-A4CL-01 1 204093775 204093775 G T SOX13 Missense_Mutation p.R461L 0.26 deleterious(0) probably_damaging(0.998) TCGA-85-A4CL-01 1 204228674 204228674 G A PLEKHA6 Missense_Mutation p.P240L 0.19 tolerated(0.2) benign(0.017) TCGA-85-A4CL-01 1 204429480 204429480 C G PIK3C2B Missense_Mutation p.E492Q 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-85-A4CL-01 1 207107855 207107855 C T PIGR Missense_Mutation p.E539K 0.23 deleterious(0.01) probably_damaging(0.994) TCGA-85-A4CL-01 1 209950725 209950725 A T TRAF3IP3 Missense_Mutation p.N361I 0.20 deleterious(0.03) possibly_damaging(0.807) TCGA-85-A4CL-01 1 210522315 210522315 G C HHAT Intron 0.18 TCGA-85-A4CL-01 1 216017644 216017644 C T USH2A Missense_Mutation p.D3084N 0.21 benign(0.003) TCGA-85-A4CL-01 1 216019187 216019187 G A USH2A Missense_Mutation p.H3012Y 0.13 benign(0.001) TCGA-85-A4CL-01 1 216062006 216062006 C T USH2A Missense_Mutation p.R2662K 0.27 benign(0.341) TCGA-85-A4CL-01 1 216420069 216420069 C G USH2A Missense_Mutation p.L889F 0.25 possibly_damaging(0.781) TCGA-85-A4CL-01 1 222801100 222801100 G C MIA3 Missense_Mutation p.E180Q 0.33 tolerated(0.1) benign(0.287) TCGA-85-A4CL-01 1 222837455 222837455 G A MIA3 Missense_Mutation p.G1793E 0.19 deleterious(0.01) possibly_damaging(0.878) TCGA-85-A4CL-01 1 226176006 226176006 G C SDE2 Nonsense_Mutation p.S242* 0.24 TCGA-85-A4CL-01 1 226182969 226182969 C T SDE2 Missense_Mutation p.G79E 0.16 deleterious(0.02) probably_damaging(1) TCGA-85-A4CL-01 1 226420132 226420132 G A LIN9 3'UTR 0.22 TCGA-85-A4CL-01 1 227268703 227268703 C G CDC42BPA Missense_Mutation p.E791Q 0.26 deleterious(0.02) benign(0.406) TCGA-85-A4CL-01 1 228346799 228346799 G T GJC2 3'UTR 0.17 TCGA-85-A4CL-01 1 22835692 22835692 C T ZBTB40 Missense_Mutation p.S600L 0.40 tolerated(0.18) unknown(0) TCGA-85-A4CL-01 1 228400197 228400197 C G OBSCN Nonsense_Mutation p.S238* 0.30 TCGA-85-A4CL-01 1 228475522 228475522 G A OBSCN Silent p.L3653L 0.15 TCGA-85-A4CL-01 1 228588809 228588809 C G TRIM11 Silent p.L197L 0.25 TCGA-85-A4CL-01 1 235850265 235850265 C T LYST Missense_Mutation p.R3595K 0.21 tolerated(0.23) probably_damaging(0.965) TCGA-85-A4CL-01 1 235969804 235969804 G - LYST Frame_Shift_Del p.L878Sfs*21 0.11 TCGA-85-A4CL-01 1 236228219 236228219 G A NID1 Missense_Mutation p.S54F 0.14 deleterious(0) possibly_damaging(0.898) TCGA-85-A4CL-01 1 236902749 236902749 G A ACTN2 Missense_Mutation p.E342K 0.28 deleterious(0.01) possibly_damaging(0.566) TCGA-85-A4CL-01 1 237865357 237865357 G A RYR2 Silent p.E3149E 0.18 TCGA-85-A4CL-01 1 240555822 240555822 C G FMN2 Missense_Mutation p.Q1624E 0.25 possibly_damaging(0.841) TCGA-85-A4CL-01 1 241797060 241797060 G A CHML 3'UTR 0.09 TCGA-85-A4CL-01 1 243668570 243668570 G A AKT3 Missense_Mutation p.S474F 0.11 tolerated(0.05) probably_damaging(0.925) TCGA-85-A4CL-01 1 243858901 243858901 G A AKT3 Missense_Mutation p.S55L 0.20 tolerated(0.05) probably_damaging(0.999) TCGA-85-A4CL-01 1 244214709 244214709 C T ZBTB18 5'UTR 0.19 TCGA-85-A4CL-01 1 245019253 245019253 C A HNRNPU Missense_Mutation p.R707I 0.27 tolerated(0.23) unknown(0) TCGA-85-A4CL-01 1 245019434 245019434 C G HNRNPU Missense_Mutation p.E647Q 0.25 tolerated(0.06) unknown(0) TCGA-85-A4CL-01 1 246729212 246729212 C G TFB2M Missense_Mutation p.D77H 0.20 tolerated(0.12) possibly_damaging(0.846) TCGA-85-A4CL-01 1 247473695 247473695 C T ZNF496 Missense_Mutation p.D239N 0.19 deleterious(0.01) possibly_damaging(0.566) TCGA-85-A4CL-01 1 247751861 247751861 C T OR2G2 Missense_Mutation p.S67F 0.07 deleterious(0) possibly_damaging(0.836) TCGA-85-A4CL-01 1 247769229 247769229 C G OR2G3 Silent p.L114L 0.29 TCGA-85-A4CL-01 1 248112456 248112456 G C OR2L8 Missense_Mutation p.Q99H 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-85-A4CL-01 1 248436276 248436276 G T OR2T33 Missense_Mutation p.P281T 0.35 deleterious(0) probably_damaging(1) TCGA-85-A4CL-01 1 248436337 248436337 G - OR2T33 Frame_Shift_Del p.K261Nfs*23 0.23 TCGA-85-A4CL-01 1 248722745 248722745 G A OR2T29 Silent p.F16F 0.10 TCGA-85-A4CL-01 1 248737986 248737986 C T OR2T34 Missense_Mutation p.E25K 0.06 tolerated(0.07) benign(0.038) TCGA-85-A4CL-01 1 25717396 25717396 G C RHCE Missense_Mutation p.F215L 0.47 deleterious(0.04) possibly_damaging(0.54) TCGA-85-A4CL-01 1 26161667 26161667 G A AUNIP Silent p.V297V 0.41 TCGA-85-A4CL-01 1 32623945 32623945 G C KPNA6 Missense_Mutation p.E137Q 0.34 tolerated(0.14) benign(0.002) TCGA-85-A4CL-01 1 35824672 35824672 G A ZMYM4 Missense_Mutation p.D78N 0.33 tolerated_low_confidence(0.23) possibly_damaging(0.767) TCGA-85-A4CL-01 1 55186911 55186911 G A TTC4 Missense_Mutation p.R156K 0.38 deleterious(0.05) probably_damaging(0.922) TCGA-85-A4CL-01 1 60314129 60314129 G A HOOK1 Missense_Mutation p.E358K 0.42 deleterious(0.01) possibly_damaging(0.463) TCGA-85-A4CL-01 1 60505594 60505594 C T C1orf87 Missense_Mutation p.E248K 0.32 tolerated(0.1) benign(0.045) TCGA-85-A4CL-01 1 70488866 70488866 G T LRRC7 Missense_Mutation p.A497S 0.48 tolerated(0.84) benign(0.004) TCGA-85-A4CL-01 1 76190395 76190395 G C ACADM 5'Flank 0.42 TCGA-85-A4CL-01 1 76254940 76254940 G A RABGGTB Missense_Mutation p.E70K 0.10 tolerated(0.08) benign(0.029) TCGA-85-A4CL-01 1 76288254 76288254 G C MSH4 Missense_Mutation p.G384R 0.62 deleterious(0.01) benign(0.142) TCGA-85-A4CL-01 1 78268977 78268977 A G FAM73A Silent p.R132R 0.33 TCGA-85-A4CL-01 1 84679882 84679882 G A PRKACB Missense_Mutation p.R318Q 0.58 tolerated(0.17) benign(0.284) TCGA-85-A4CL-01 1 86820539 86820539 C T ODF2L Missense_Mutation p.D508N 0.44 tolerated(0.13) benign(0.169) TCGA-85-A4CL-01 1 89478923 89478923 G C GBP3 Missense_Mutation p.I271M 0.47 deleterious(0) probably_damaging(0.958) TCGA-85-A4CL-01 1 906721 906721 C G PLEKHN1 Silent p.L242L 0.38 TCGA-85-A4CL-01 1 92459688 92459688 C G BRDT Missense_Mutation p.H722D 0.54 tolerated(0.19) benign(0.035) TCGA-85-A4CL-01 1 989845 989845 C T AGRN Missense_Mutation p.S1965F 0.60 tolerated(0.05) probably_damaging(0.913) TCGA-85-A4CL-01 20 13698024 13698024 A G ESF1 Silent p.D751D 0.26 TCGA-85-A4CL-01 20 16359872 16359872 C T KIF16B Silent p.Q925Q 0.08 TCGA-85-A4CL-01 20 16360255 16360255 G A KIF16B Missense_Mutation p.R798W 0.43 deleterious(0) probably_damaging(0.961) TCGA-85-A4CL-01 20 17599310 17599310 G A RRBP1 Silent p.L797L 0.23 TCGA-85-A4CL-01 20 20033134 20033134 C A CRNKL1 Silent p.A112A 0.24 TCGA-85-A4CL-01 20 21309266 21309266 G A XRN2 Missense_Mutation p.A129T 0.23 tolerated(0.56) benign(0.005) TCGA-85-A4CL-01 20 23476540 23476540 G A CST8 Missense_Mutation p.E140K 0.36 tolerated(1) benign(0.002) TCGA-85-A4CL-01 20 239943 239943 C G DEFB132 Nonsense_Mutation p.S95* 0.31 TCGA-85-A4CL-01 20 2840951 2840951 G C VPS16 Missense_Mutation p.D103H 0.33 deleterious(0) probably_damaging(0.991) TCGA-85-A4CL-01 20 30070236 30070236 C T REM1 Silent p.I190I 0.21 TCGA-85-A4CL-01 20 30458365 30458365 C T DUSP15 5'UTR 0.20 TCGA-85-A4CL-01 20 3053063 3053063 G A OXT Silent p.%3D 0.19 TCGA-85-A4CL-01 20 31572959 31572959 G A SUN5 Silent p.F310F 0.24 TCGA-85-A4CL-01 20 33329447 33329447 G C NCOA6 Missense_Mutation p.S1538C 0.31 benign(0.376) TCGA-85-A4CL-01 20 33345853 33345853 G T NCOA6 Nonsense_Mutation p.S233* 0.16 TCGA-85-A4CL-01 20 33345886 33345886 G C NCOA6 Missense_Mutation p.S222C 0.18 probably_damaging(0.988) TCGA-85-A4CL-01 20 35242200 35242200 G A SLA2 3'UTR 0.23 TCGA-85-A4CL-01 20 37531330 37531330 C T PPP1R16B Silent p.I197I 0.27 TCGA-85-A4CL-01 20 39991014 39991014 C G EMILIN3 Missense_Mutation p.E399Q 0.37 deleterious(0) probably_damaging(0.965) TCGA-85-A4CL-01 20 43752854 43752854 G A WFDC12 Silent p.S44S 0.19 TCGA-85-A4CL-01 20 46292220 46292220 C T SULF2 Nonsense_Mutation p.W735* 0.30 TCGA-85-A4CL-01 20 47632816 47632816 G A ARFGEF2 Splice_Site p.X1394_splice 0.41 TCGA-85-A4CL-01 20 489132 489132 C G CSNK2A1 Missense_Mutation p.E22Q 0.07 deleterious(0.02) possibly_damaging(0.495) TCGA-85-A4CL-01 20 49626176 49626176 C G KCNG1 Missense_Mutation p.V234L 0.22 deleterious(0.01) probably_damaging(0.994) TCGA-85-A4CL-01 20 56191489 56191489 C G ZBP1 Missense_Mutation p.E24Q 0.07 deleterious(0.02) benign(0.37) TCGA-85-A4CL-01 20 5904581 5904581 G C CHGB Silent p.L597L 0.07 TCGA-85-A4CL-01 20 5988028 5988028 A G CRLS1 Intron 0.31 TCGA-85-A4CL-01 20 6057946 6057946 C G FERMT1 Silent p.L636L 0.30 TCGA-85-A4CL-01 20 60776067 60776067 G A MTG2 Silent p.L385L 0.16 TCGA-85-A4CL-01 20 62044887 62044887 C T KCNQ2 Missense_Mutation p.R560Q 0.31 deleterious(0) probably_damaging(0.99) TCGA-85-A4CL-01 20 62365043 62365043 G A ZGPAT Missense_Mutation p.E275K 0.07 tolerated(0.22) benign(0.001) TCGA-85-A4CL-01 21 44837607 44837607 C G SIK1 Missense_Mutation p.G598R 0.44 deleterious(0) benign(0.377) TCGA-85-A4CL-01 21 45475711 45475711 G C TRAPPC10 Missense_Mutation p.M205I 0.42 tolerated(0.42) possibly_damaging(0.572) TCGA-85-A4CL-01 21 47588297 47588297 G T SPATC1L Silent p.R157R 0.38 TCGA-85-A4CL-01 22 17688052 17688052 G C CECR1 Missense_Mutation p.P151A 0.32 tolerated(0.12) benign(0) TCGA-85-A4CL-01 22 19318995 19318995 G C HIRA Missense_Mutation p.Q1008E 0.25 deleterious(0.02) probably_damaging(0.977) TCGA-85-A4CL-01 22 20720865 20720865 C T USP41 Missense_Mutation p.E295K 0.32 tolerated(0.52) benign(0.02) TCGA-85-A4CL-01 22 24159044 24159044 C G SMARCB1 Missense_Mutation p.S239C 0.26 deleterious(0.01) possibly_damaging(0.781) TCGA-85-A4CL-01 22 24472190 24472190 G A CABIN1 Missense_Mutation p.R902K 0.10 deleterious(0.01) probably_damaging(0.977) TCGA-85-A4CL-01 22 24921750 24921750 C A UPB1 Silent p.I381I 0.26 TCGA-85-A4CL-01 22 30731650 30731650 G A SF3A1 Silent p.L733L 0.07 TCGA-85-A4CL-01 22 32439361 32439361 C G SLC5A1 Missense_Mutation p.I31M 0.34 deleterious(0.01) benign(0.127) TCGA-85-A4CL-01 22 32589273 32589273 T C RFPL2 Intron 0.32 TCGA-85-A4CL-01 22 35819251 35819265 CGCATCGAGAAGCAG - MCM5 In_Frame_Del p.R674_Q678del 0.35 TCGA-85-A4CL-01 22 36691695 36691695 G C MYH9 Missense_Mutation p.S1114C 0.17 possibly_damaging(0.759) TCGA-85-A4CL-01 22 37271760 37271760 T A NCF4 Silent p.P231P 0.40 TCGA-85-A4CL-01 22 37603468 37603468 G A SSTR3 Silent p.I125I 0.06 TCGA-85-A4CL-01 22 41568575 41568575 T C EP300 Missense_Mutation p.W1509R 0.38 probably_damaging(1) TCGA-85-A4CL-01 22 42159272 42159272 G A MEI1 Missense_Mutation p.A739T 0.23 deleterious(0) probably_damaging(0.995) TCGA-85-A4CL-01 22 42206267 42206267 C T CCDC134 Silent p.P94P 0.17 TCGA-85-A4CL-01 22 42522878 42522878 C T CYP2D6 Silent p.P430P 0.23 TCGA-85-A4CL-01 22 42608728 42608728 C T TCF20 Missense_Mutation p.E862K 0.16 probably_damaging(0.995) TCGA-85-A4CL-01 22 43088851 43088851 A G A4GALT 3'UTR 0.34 TCGA-85-A4CL-01 22 43575731 43575731 C T TTLL12 Missense_Mutation p.G245E 0.07 tolerated(0.05) benign(0.103) TCGA-85-A4CL-01 22 43658776 43658776 C G SCUBE1 Missense_Mutation p.C187S 0.20 deleterious(0) probably_damaging(0.997) TCGA-85-A4CL-01 22 45750012 45750012 G A SMC1B Missense_Mutation p.A1040V 0.14 deleterious(0.05) benign(0.16) TCGA-85-A4CL-01 22 50904621 50904621 G A SBF1 Silent p.I285I 0.66 TCGA-85-A4CL-01 22 50905863 50905863 G A SBF1 Silent p.L151L 0.65 TCGA-85-A4CL-01 22 50906864 50906864 G A SBF1 Silent p.L28L 0.59 TCGA-85-A4CL-01 2 100199404 100199404 G C AFF3 Silent p.L908L 0.25 TCGA-85-A4CL-01 2 103274180 103274180 C G SLC9A2 Missense_Mutation p.I149M 0.04 deleterious(0.02) probably_damaging(1) TCGA-85-A4CL-01 2 111408245 111408245 C A BUB1 Missense_Mutation p.G694V 0.26 tolerated(0.16) possibly_damaging(0.448) TCGA-85-A4CL-01 2 11284207 11284207 G A C2orf50 Silent p.K153K 0.11 TCGA-85-A4CL-01 2 113309400 113309400 G C POLR1B Missense_Mutation p.G271R 0.21 deleterious(0.04) possibly_damaging(0.844) TCGA-85-A4CL-01 2 120413939 120413939 G A PCDP1 Missense_Mutation p.E806K 0.08 deleterious(0.03) benign(0.39) TCGA-85-A4CL-01 2 122513376 122513376 C T TSN Silent p.F7F 0.28 TCGA-85-A4CL-01 2 132277212 132277212 C T AC093838.4 RNA 0.39 TCGA-85-A4CL-01 2 136567501 136567501 C T LCT Missense_Mutation p.E806K 0.28 deleterious(0) probably_damaging(0.974) TCGA-85-A4CL-01 2 136743127 136743127 C G DARS 5'UTR 0.35 TCGA-85-A4CL-01 2 138727779 138727779 G A HNMT Missense_Mutation p.G61E 0.30 tolerated(0.07) probably_damaging(0.995) TCGA-85-A4CL-01 2 148695735 148695735 C T ORC4 Missense_Mutation p.E368K 0.25 tolerated(0.05) benign(0.051) TCGA-85-A4CL-01 2 150071289 150071289 G T LYPD6B 3'UTR 0.26 TCGA-85-A4CL-01 2 151343788 151343788 G C RND3 Missense_Mutation p.F48L 0.28 deleterious(0.04) benign(0.004) TCGA-85-A4CL-01 2 152319428 152319428 C G RIF1 Missense_Mutation p.P1132A 0.29 tolerated(0.13) benign(0.011) TCGA-85-A4CL-01 2 152977280 152977280 C G STAM2 Missense_Mutation p.M462I 0.34 tolerated_low_confidence(0.18) benign(0.001) TCGA-85-A4CL-01 2 15326937 15326937 C T NBAS Missense_Mutation p.E2214K 0.25 tolerated(0.4) benign(0.03) TCGA-85-A4CL-01 2 15415726 15415726 G A NBAS Missense_Mutation p.S1869F 0.30 deleterious(0) possibly_damaging(0.526) TCGA-85-A4CL-01 2 15415732 15415732 G T NBAS Missense_Mutation p.P1867Q 0.30 deleterious(0) possibly_damaging(0.815) TCGA-85-A4CL-01 2 15536539 15536539 G A NBAS Silent p.L1044L 0.47 TCGA-85-A4CL-01 2 15607829 15607829 G A NBAS Silent p.L659L 0.29 TCGA-85-A4CL-01 2 163174679 163174679 G A IFIH1 Nonsense_Mutation p.Q47* 0.24 TCGA-85-A4CL-01 2 165969488 165969488 T G SCN3A Silent p.I1250I 0.24 TCGA-85-A4CL-01 2 165969532 165969532 T G SCN3A Missense_Mutation p.I1236L 0.25 tolerated(0.1) benign(0.171) TCGA-85-A4CL-01 2 166758327 166758327 C A TTC21B Missense_Mutation p.A888S 0.30 tolerated(0.5) benign(0.07) TCGA-85-A4CL-01 2 178098953 178098953 C G NFE2L2 Missense_Mutation p.G31A 0.38 deleterious(0.02) benign(0.318) TCGA-85-A4CL-01 2 179399891 179399891 C G TTN Missense_Mutation p.E33817D 0.23 TCGA-85-A4CL-01 2 179440842 179440842 C T TTN Silent p.E23339E 0.21 TCGA-85-A4CL-01 2 179446810 179446810 C T TTN Missense_Mutation p.E22096K 0.31 TCGA-85-A4CL-01 2 17959282 17959282 C T GEN1 Nonsense_Mutation p.R406* 0.29 TCGA-85-A4CL-01 2 179647678 179647678 A G TTN Silent p.S985S 0.25 TCGA-85-A4CL-01 2 179997134 179997134 C A SESTD1 Missense_Mutation p.G290V 0.30 deleterious(0) probably_damaging(0.999) TCGA-85-A4CL-01 2 182542828 182542828 C T NEUROD1 Missense_Mutation p.E254K 0.32 deleterious(0.05) probably_damaging(0.991) TCGA-85-A4CL-01 2 182783599 182783599 G A SSFA2 Missense_Mutation p.E995K 0.09 deleterious(0.04) possibly_damaging(0.615) TCGA-85-A4CL-01 2 191843579 191843579 C G STAT1 Intron 0.35 TCGA-85-A4CL-01 2 191843640 191843640 C G STAT1 Missense_Mutation p.E605D 0.33 deleterious(0) possibly_damaging(0.903) TCGA-85-A4CL-01 2 191874615 191874615 C G STAT1 Missense_Mutation p.E39Q 0.26 deleterious(0) probably_damaging(0.982) TCGA-85-A4CL-01 2 196642654 196642654 C T DNAH7 Missense_Mutation p.R3645K 0.22 deleterious(0) probably_damaging(1) TCGA-85-A4CL-01 2 196837053 196837053 G C DNAH7 Missense_Mutation p.F657L 0.28 tolerated(0.29) benign(0.167) TCGA-85-A4CL-01 2 197986134 197986134 C G ANKRD44 Missense_Mutation p.L276F 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-85-A4CL-01 2 202025156 202025156 G T CFLAR Missense_Mutation p.E265D 0.22 tolerated(0.97) benign(0.009) TCGA-85-A4CL-01 2 20402472 20402472 G C SDC1 3'UTR 0.28 TCGA-85-A4CL-01 2 204305898 204305898 C A RAPH1 Missense_Mutation p.R672L 0.33 benign(0.393) TCGA-85-A4CL-01 2 206659744 206659744 G A NRP2 Missense_Mutation p.V920I 0.24 deleterious(0.02) probably_damaging(0.996) TCGA-85-A4CL-01 2 207630000 207630000 G C MDH1B 5'UTR 0.18 TCGA-85-A4CL-01 2 211518809 211518809 G A CPS1 Missense_Mutation p.V1187I 0.28 deleterious(0.03) probably_damaging(0.997) TCGA-85-A4CL-01 2 21231220 21231220 C T APOB Silent p.G2840G 0.09 TCGA-85-A4CL-01 2 216251584 216251584 C T FN1 Silent p.R1480R 0.17 TCGA-85-A4CL-01 2 216273066 216273066 C T FN1 Missense_Mutation p.E795K 0.32 deleterious(0.02) probably_damaging(0.998) TCGA-85-A4CL-01 2 219339484 219339484 G A USP37 Missense_Mutation p.S723F 0.35 deleterious(0.03) benign(0.398) TCGA-85-A4CL-01 2 219513943 219513943 C T ZNF142 Missense_Mutation p.E230K 0.35 deleterious(0) benign(0.292) TCGA-85-A4CL-01 2 219544331 219544331 G A STK36 Missense_Mutation p.R276H 0.32 tolerated(0.06) benign(0.003) TCGA-85-A4CL-01 2 219617499 219617499 C T TTLL4 Missense_Mutation p.S997F 0.23 deleterious(0) probably_damaging(0.921) TCGA-85-A4CL-01 2 220071667 220071667 C G ZFAND2B 5'UTR 0.27 TCGA-85-A4CL-01 2 220495026 220495026 G C SLC4A3 Missense_Mutation p.E282Q 0.33 deleterious(0.01) probably_damaging(0.917) TCGA-85-A4CL-01 2 228881681 228881681 C T SPHKAP Missense_Mutation p.G1297R 0.31 tolerated(0.67) benign(0.008) TCGA-85-A4CL-01 2 234775922 234775922 C G MSL3P1 RNA 0.19 TCGA-85-A4CL-01 2 238290014 238290014 G C COL6A3 Missense_Mutation p.L481V 0.40 probably_damaging(0.932) TCGA-85-A4CL-01 2 26416628 26416628 G A HADHA Missense_Mutation p.P568L 0.36 tolerated(0.1) probably_damaging(0.993) TCGA-85-A4CL-01 2 26569121 26569121 G C EPT1 Silent p.V7V 0.12 TCGA-85-A4CL-01 2 27360122 27360122 C T C2orf53 Missense_Mutation p.S359N 0.33 deleterious(0) probably_damaging(0.997) TCGA-85-A4CL-01 2 27676911 27676911 G A IFT172 Nonsense_Mutation p.Q1217* 0.12 TCGA-85-A4CL-01 2 27677466 27677466 G A IFT172 Missense_Mutation p.H1145Y 0.12 deleterious(0.01) benign(0.444) TCGA-85-A4CL-01 2 32288957 32288957 G A SPAST Silent p.P19P 0.31 TCGA-85-A4CL-01 2 33817200 33817200 G A FAM98A Missense_Mutation p.S95F 0.37 deleterious(0) probably_damaging(0.965) TCGA-85-A4CL-01 2 37402349 37402349 C G SULT6B1 Missense_Mutation p.D146H 0.20 deleterious(0.01) probably_damaging(0.986) TCGA-85-A4CL-01 2 42510097 42510097 C G EML4 Missense_Mutation p.T309R 0.17 deleterious(0) benign(0.429) TCGA-85-A4CL-01 2 44502719 44502719 G C SLC3A1 Missense_Mutation p.M15I 0.19 tolerated_low_confidence(0.29) benign(0.002) TCGA-85-A4CL-01 2 44549016 44549016 G C PREPL Missense_Mutation p.L682V 0.31 deleterious(0) probably_damaging(0.98) TCGA-85-A4CL-01 2 47134963 47134963 G C MCFD2 Missense_Mutation p.H99D 0.35 deleterious(0.01) probably_damaging(0.928) TCGA-85-A4CL-01 2 47672761 47672761 C T MSH2 Nonsense_Mutation p.Q451* 0.11 TCGA-85-A4CL-01 2 48808367 48808367 G C STON1-GTF2A1L Missense_Mutation p.D199H 0.40 deleterious(0) probably_damaging(0.94) TCGA-85-A4CL-01 2 50280712 50280712 G A NRXN1 Silent p.I1315I 0.20 TCGA-85-A4CL-01 2 55462086 55462086 G A RPS27A Silent p.L103L 0.50 TCGA-85-A4CL-01 2 58468351 58468351 A T FANCL Splice_Site p.X32_splice 0.31 TCGA-85-A4CL-01 2 61187609 61187609 C A PUS10 Missense_Mutation p.W306C 0.28 deleterious(0) probably_damaging(1) TCGA-85-A4CL-01 2 69002156 69002156 G A ARHGAP25 Intron 0.56 TCGA-85-A4CL-01 2 71797847 71797847 C T DYSF Silent p.L1068L 0.35 TCGA-85-A4CL-01 2 73493798 73493798 C G FBXO41 Missense_Mutation p.Q306H 0.36 tolerated(0.13) benign(0.402) TCGA-85-A4CL-01 2 73680117 73680117 G C ALMS1 Missense_Mutation p.D2154H 0.41 probably_damaging(0.988) TCGA-85-A4CL-01 2 73680396 73680396 G A ALMS1 Missense_Mutation p.E2247K 0.33 probably_damaging(0.963) TCGA-85-A4CL-01 2 74719173 74719173 G C TTC31 Missense_Mutation p.E307Q 0.30 tolerated(0.09) possibly_damaging(0.846) TCGA-85-A4CL-01 2 74720131 74720131 C T TTC31 Missense_Mutation p.S449L 0.20 tolerated(0.15) benign(0.006) TCGA-85-A4CL-01 2 74720171 74720171 G C TTC31 Missense_Mutation p.L462F 0.33 deleterious_low_confidence(0.01) benign(0.001) TCGA-85-A4CL-01 2 74725146 74725146 C T LBX2 Missense_Mutation p.E165K 0.17 tolerated(0.27) benign(0.127) TCGA-85-A4CL-01 2 74729987 74729987 C G LBX2 5'UTR 0.24 TCGA-85-A4CL-01 2 85875905 85875905 G A USP39 Missense_Mutation p.D558N 0.28 deleterious_low_confidence(0.03) benign(0.003) TCGA-85-A4CL-01 2 85876124 85876124 G C USP39 3'UTR 0.25 TCGA-85-A4CL-01 2 87042598 87042598 G C CD8B 3'Flank 0.18 TCGA-85-A4CL-01 2 88874785 88874785 G A EIF2AK3 Missense_Mutation p.S739L 0.16 tolerated(0.13) benign(0.15) TCGA-85-A4CL-01 2 8919116 8919116 C A KIDINS220 Missense_Mutation p.V842L 0.27 tolerated(0.09) probably_damaging(0.991) TCGA-85-A4CL-01 2 97377642 97377642 C T LMAN2L Missense_Mutation p.D221N 0.10 deleterious(0.03) probably_damaging(0.98) TCGA-85-A4CL-01 2 98866891 98866891 C A VWA3B Silent p.S928S 0.24 TCGA-85-A4CL-01 3 100994579 100994579 G A IMPG2 Silent p.L198L 0.17 TCGA-85-A4CL-01 3 108626864 108626864 C T GUCA1C 3'UTR 0.15 TCGA-85-A4CL-01 3 108836925 108836925 C G MORC1 5'UTR 0.38 TCGA-85-A4CL-01 3 109047888 109047888 C T DPPA4 Missense_Mutation p.D243N 0.26 tolerated(0.23) benign(0.004) TCGA-85-A4CL-01 3 112642485 112642485 C G CD200R1 3'UTR 0.23 TCGA-85-A4CL-01 3 124117701 124117701 G C KALRN Missense_Mutation p.E775Q 0.22 tolerated(0.05) benign(0.013) TCGA-85-A4CL-01 3 125741768 125741768 C T SLC41A3 Silent p.L202L 0.17 TCGA-85-A4CL-01 3 12856641 12856641 G C CAND2 Missense_Mutation p.E336D 0.41 tolerated(0.41) benign(0.007) TCGA-85-A4CL-01 3 128998558 128998558 G C HMCES 5'UTR 0.20 TCGA-85-A4CL-01 3 129225256 129225256 C T IFT122 Silent p.F936F 0.23 TCGA-85-A4CL-01 3 129231155 129231155 G A IFT122 Missense_Mutation p.E1014K 0.07 tolerated(0.17) benign(0.126) TCGA-85-A4CL-01 3 129824385 129824385 C G FAM86HP RNA 0.22 TCGA-85-A4CL-01 3 132242426 132242426 G A DNAJC13 Missense_Mutation p.E1977K 0.23 deleterious(0) probably_damaging(0.996) TCGA-85-A4CL-01 3 134078172 134078172 G C AMOTL2 Missense_Mutation p.S686C 0.05 tolerated(0.08) benign(0.296) TCGA-85-A4CL-01 3 134269038 134269038 C T CEP63 Missense_Mutation p.S439L 0.20 tolerated(0.27) benign(0.02) TCGA-85-A4CL-01 3 136141407 136141407 C T STAG1 Missense_Mutation p.V628I 0.27 tolerated(0.11) benign(0) TCGA-85-A4CL-01 3 137748705 137748705 G A CLDN18 Silent p.V190V 0.18 TCGA-85-A4CL-01 3 142242894 142242894 C A ATR Missense_Mutation p.D1365Y 0.18 deleterious(0) probably_damaging(1) TCGA-85-A4CL-01 3 142423337 142423337 A G PLS1 Missense_Mutation p.E513G 0.34 tolerated(0.54) benign(0.001) TCGA-85-A4CL-01 3 147113948 147113948 C T ZIC4 Missense_Mutation p.E177K 0.07 deleterious(0.01) probably_damaging(0.916) TCGA-85-A4CL-01 3 150127594 150127594 C G TSC22D2 Missense_Mutation p.Q153E 0.05 tolerated(0.11) benign(0.042) TCGA-85-A4CL-01 3 151164002 151164002 G A IGSF10 Missense_Mutation p.S1256L 0.24 tolerated(0.16) benign(0.015) TCGA-85-A4CL-01 3 152880615 152880615 G A RAP2B Missense_Mutation p.E45K 0.20 tolerated(0.13) possibly_damaging(0.797) TCGA-85-A4CL-01 3 153840025 153840025 C T ARHGEF26 Silent p.L82L 0.14 TCGA-85-A4CL-01 3 153840347 153840347 C T ARHGEF26 Missense_Mutation p.S189L 0.21 tolerated_low_confidence(0.68) benign(0.001) TCGA-85-A4CL-01 3 155311931 155311931 G A PLCH1 Missense_Mutation p.S78F 0.26 deleterious(0) probably_damaging(0.999) TCGA-85-A4CL-01 3 155838427 155838427 G C KCNAB1 Silent p.A9A 0.17 TCGA-85-A4CL-01 3 160148513 160148513 G A SMC4 Silent p.K974K 0.23 TCGA-85-A4CL-01 3 160149458 160149458 G A SMC4 Missense_Mutation p.E1048K 0.12 tolerated(0.09) benign(0.217) TCGA-85-A4CL-01 3 160149461 160149461 G A SMC4 Missense_Mutation p.D1049N 0.12 tolerated(0.25) benign(0.005) TCGA-85-A4CL-01 3 167277954 167277954 G C WDR49 Missense_Mutation p.I183M 0.27 deleterious(0) possibly_damaging(0.868) TCGA-85-A4CL-01 3 170786750 170786750 C T TNIK Missense_Mutation p.D1196N 0.21 deleterious(0) probably_damaging(0.998) TCGA-85-A4CL-01 3 179322645 179322645 G A NDUFB5 Silent p.A14A 0.26 TCGA-85-A4CL-01 3 183209716 183209716 C G KLHL6 Nonstop_Mutation p.*622Sext*42 0.31 TCGA-85-A4CL-01 3 187086266 187086266 C G RTP4 Missense_Mutation p.Q13E 0.14 deleterious(0) probably_damaging(0.994) TCGA-85-A4CL-01 3 190936662 190936662 G C OSTN Missense_Mutation p.E77Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-85-A4CL-01 3 192516720 192516720 G C MB21D2 Missense_Mutation p.Q311E 0.13 tolerated(0.19) possibly_damaging(0.569) TCGA-85-A4CL-01 3 19498290 19498290 C T KCNH8 Missense_Mutation p.S619L 0.51 tolerated(0.65) possibly_damaging(0.72) TCGA-85-A4CL-01 3 196159292 196159292 G T UBXN7 5'UTR 0.11 TCGA-85-A4CL-01 3 196198779 196198779 G A RNF168 Missense_Mutation p.H543Y 0.16 tolerated(0.08) benign(0.081) TCGA-85-A4CL-01 3 196198790 196198790 G A RNF168 Missense_Mutation p.S539F 0.14 deleterious(0.01) probably_damaging(0.944) TCGA-85-A4CL-01 3 196743169 196743169 G C MFI2 Silent p.L324L 0.05 TCGA-85-A4CL-01 3 197616569 197616569 C T IQCG Missense_Mutation p.R405Q 0.17 deleterious(0) probably_damaging(0.998) TCGA-85-A4CL-01 3 28476714 28476714 C G ZCWPW2 Nonsense_Mutation p.S149* 0.42 TCGA-85-A4CL-01 3 38962733 38962733 G A SCN11A Silent p.I242I 0.09 TCGA-85-A4CL-01 3 46753868 46753868 G T PRSS50 Silent p.I342I 0.55 TCGA-85-A4CL-01 3 49932792 49932792 C T MST1R Missense_Mutation p.D1027N 0.59 tolerated(0.25) benign(0.009) TCGA-85-A4CL-01 3 51308309 51308309 G C DOCK3 Missense_Mutation p.E807Q 0.56 deleterious(0.01) probably_damaging(0.997) TCGA-85-A4CL-01 3 52442611 52442611 C G BAP1 Missense_Mutation p.G45A 0.60 deleterious(0) probably_damaging(1) TCGA-85-A4CL-01 3 52505946 52505946 G A NISCH Missense_Mutation p.D176N 0.35 deleterious(0) probably_damaging(0.987) TCGA-85-A4CL-01 3 54537576 54537576 G A CACNA2D3 Missense_Mutation p.E147K 0.49 deleterious(0.01) probably_damaging(0.987) TCGA-85-A4CL-01 3 9413060 9413060 C G THUMPD3 Nonsense_Mutation p.S216* 0.55 TCGA-85-A4CL-01 3 96963154 96963154 C T EPHA6 Intron 0.33 TCGA-85-A4CL-01 3 97711752 97711752 C A GABRR3 3'Flank 0.55 TCGA-85-A4CL-01 3 97888021 97888021 G A OR5H15 Missense_Mutation p.E160K 0.10 tolerated(0.14) benign(0.055) TCGA-85-A4CL-01 3 99569323 99569323 G T FILIP1L Silent p.L399L 0.21 TCGA-85-A4CL-01 3 99891232 99891232 G T CMSS1 Nonsense_Mutation p.E218* 0.33 TCGA-85-A4CL-01 4 106157356 106157356 A T TET2 Nonsense_Mutation p.K753* 0.48 TCGA-85-A4CL-01 4 123249403 123249403 G A KIAA1109 Missense_Mutation p.E3714K 0.48 benign(0.155) TCGA-85-A4CL-01 4 123855596 123855596 G C SPATA5 Missense_Mutation p.E284Q 0.56 tolerated(0.17) benign(0.005) TCGA-85-A4CL-01 4 128626754 128626754 G C INTU Missense_Mutation p.L525F 0.43 deleterious(0) probably_damaging(0.966) TCGA-85-A4CL-01 4 129767674 129767674 C T JADE1 Nonsense_Mutation p.Q95* 0.55 TCGA-85-A4CL-01 4 129924946 129924946 C T SCLT1 Missense_Mutation p.D126N 0.24 tolerated(0.13) benign(0.176) TCGA-85-A4CL-01 4 13545704 13545704 C A NKX3-2 Missense_Mutation p.G112V 0.60 tolerated_low_confidence(0.13) benign(0.036) TCGA-85-A4CL-01 4 15008952 15008952 G A CPEB2 Nonsense_Mutation p.W562* 0.33 TCGA-85-A4CL-01 4 155528127 155528127 C T FGG Missense_Mutation p.D287N 0.46 tolerated(0.09) probably_damaging(1) TCGA-85-A4CL-01 4 177052851 177052851 G T WDR17 Missense_Mutation p.D378Y 0.08 deleterious(0) probably_damaging(0.995) TCGA-85-A4CL-01 4 183594235 183594235 G C TENM3 Missense_Mutation p.E397Q 0.57 tolerated(0.28) benign(0.403) TCGA-85-A4CL-01 4 183812415 183812415 G A DCTD 3'UTR 0.33 TCGA-85-A4CL-01 4 185587089 185587089 C G PRIMPOL Missense_Mutation p.Q143E 0.11 benign(0.02) TCGA-85-A4CL-01 4 189022368 189022368 C G TRIML2 Missense_Mutation p.E58Q 0.16 deleterious(0) probably_damaging(0.984) TCGA-85-A4CL-01 4 40045230 40045230 C T RP11-333E13.4 RNA 0.53 TCGA-85-A4CL-01 4 40440149 40440149 C G RBM47 Missense_Mutation p.M254I 0.37 deleterious(0.01) possibly_damaging(0.874) TCGA-85-A4CL-01 4 4199265 4199265 C T OTOP1 Silent p.A432A 0.40 TCGA-85-A4CL-01 4 47901133 47901133 G A NFXL1 Silent p.P277P 0.45 TCGA-85-A4CL-01 4 54344815 54344815 G A LNX1 Missense_Mutation p.S527L 0.11 tolerated(0.06) possibly_damaging(0.595) TCGA-85-A4CL-01 4 55129880 55129880 C T PDGFRA Silent p.V138V 0.11 TCGA-85-A4CL-01 4 66361130 66361130 C T EPHA5 Missense_Mutation p.D348N 0.25 deleterious(0.02) probably_damaging(0.98) TCGA-85-A4CL-01 4 68619664 68619664 G A GNRHR Silent p.F130F 0.35 TCGA-85-A4CL-01 4 69093718 69093718 C A TMPRSS11B Missense_Mutation p.G388C 0.50 deleterious(0) probably_damaging(0.993) TCGA-85-A4CL-01 4 73957883 73957883 G A ANKRD17 Missense_Mutation p.S1821L 0.29 benign(0.001) TCGA-85-A4CL-01 4 74453554 74453554 G T RASSF6 Intron 0.23 TCGA-85-A4CL-01 4 76878850 76878850 C T SDAD1 Silent p.L530L 0.34 TCGA-85-A4CL-01 4 79400722 79400722 G A FRAS1 Missense_Mutation p.E2765K 0.15 benign(0.278) TCGA-85-A4CL-01 4 79832640 79832640 C T BMP2K Missense_Mutation p.S980F 0.25 deleterious_low_confidence(0) unknown(0) TCGA-85-A4CL-01 4 85717898 85717898 C G WDFY3 Missense_Mutation p.M981I 0.23 tolerated_low_confidence(0.06) benign(0.017) TCGA-85-A4CL-01 4 86916572 86916572 G A ARHGAP24 Missense_Mutation p.E589K 0.16 deleterious(0.02) possibly_damaging(0.87) TCGA-85-A4CL-01 4 87022278 87022278 C T MAPK10 Missense_Mutation p.M219I 0.30 tolerated(0.28) benign(0.025) TCGA-85-A4CL-01 4 88535250 88535250 C T DSPP Missense_Mutation p.S479L 0.32 probably_damaging(0.998) TCGA-85-A4CL-01 4 89384691 89384691 G T HERC5 Missense_Mutation p.D233Y 0.20 tolerated(0.25) benign(0.002) TCGA-85-A4CL-01 4 95173909 95173910 - A SMARCAD1 Frame_Shift_Ins p.N347Kfs*4 0.44 TCGA-85-A4CL-01 5 102309930 102309930 G C PAM Missense_Mutation p.E425Q 0.29 tolerated(0.17) probably_damaging(0.986) TCGA-85-A4CL-01 5 102484979 102484979 G A PPIP5K2 Missense_Mutation p.E290K 0.36 deleterious(0) probably_damaging(0.999) TCGA-85-A4CL-01 5 112257029 112257029 G C REEP5 Intron 0.33 TCGA-85-A4CL-01 5 115146976 115146976 C T CDO1 Silent p.L95L 0.24 TCGA-85-A4CL-01 5 1201820 1201820 G T SLC6A19 Missense_Mutation p.A19S 0.35 tolerated(0.68) benign(0.002) TCGA-85-A4CL-01 5 123984197 123984197 G A ZNF608 Missense_Mutation p.S627F 0.11 deleterious(0) probably_damaging(0.997) TCGA-85-A4CL-01 5 1294527 1294527 G C TERT Silent p.L158L 0.36 TCGA-85-A4CL-01 5 132219164 132219164 C A AFF4 Missense_Mutation p.A1078S 0.33 tolerated(1) benign(0.062) TCGA-85-A4CL-01 5 135416212 135416212 C G VTRNA2-1 RNA 0.19 TCGA-85-A4CL-01 5 135416248 135416248 C T VTRNA2-1 RNA 0.06 TCGA-85-A4CL-01 5 139060142 139060142 G A CXXC5 Missense_Mutation p.G12S 0.57 tolerated_low_confidence(1) unknown(0) TCGA-85-A4CL-01 5 140202803 140202803 G T PCDHA5 Silent p.A481A 0.26 TCGA-85-A4CL-01 5 140208633 140208633 C G PCDHA6 Silent p.L319L 0.23 TCGA-85-A4CL-01 5 140573304 140573304 A G PCDHB10 Silent p.L393L 0.32 TCGA-85-A4CL-01 5 140581762 140581762 G C PCDHB11 3'UTR 0.38 TCGA-85-A4CL-01 5 140711826 140711826 C T PCDHGA1 Silent p.F525F 0.29 TCGA-85-A4CL-01 5 140755278 140755278 G C PCDHGA6 Missense_Mutation p.S543T 0.23 deleterious_low_confidence(0.01) probably_damaging(0.93) TCGA-85-A4CL-01 5 140773906 140773906 C G PCDHGA8 Missense_Mutation p.S509C 0.14 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-85-A4CL-01 5 140788813 140788813 C G PCDHGB6 Missense_Mutation p.I348M 0.12 tolerated(0.07) benign(0.064) TCGA-85-A4CL-01 5 141335531 141335531 C G PCDH12 Missense_Mutation p.G629A 0.27 deleterious(0) possibly_damaging(0.87) TCGA-85-A4CL-01 5 145442185 145442185 G A SH3RF2 Missense_Mutation p.R704Q 0.06 deleterious_low_confidence(0.01) probably_damaging(0.921) TCGA-85-A4CL-01 5 145838702 145838702 C G TCERG1 Missense_Mutation p.Q232E 0.07 tolerated_low_confidence(0.99) unknown(0) TCGA-85-A4CL-01 5 149324066 149324066 C G PDE6A Missense_Mutation p.E57D 0.30 deleterious(0) probably_damaging(0.97) TCGA-85-A4CL-01 5 151784537 151784537 G A NMUR2 Silent p.L46L 0.06 TCGA-85-A4CL-01 5 153433363 153433363 G C MFAP3 3'UTR 0.53 TCGA-85-A4CL-01 5 153677516 153677516 G A GALNT10 Missense_Mutation p.G93E 0.27 deleterious(0) probably_damaging(1) TCGA-85-A4CL-01 5 153796413 153796413 G C GALNT10 Missense_Mutation p.D565H 0.09 deleterious(0) probably_damaging(1) TCGA-85-A4CL-01 5 154271059 154271059 G C GEMIN5 Missense_Mutation p.P1335R 0.07 tolerated(0.23) benign(0.187) TCGA-85-A4CL-01 5 154394281 154394281 T A KIF4B Missense_Mutation p.Y288N 0.28 deleterious(0) probably_damaging(1) TCGA-85-A4CL-01 5 156915320 156915320 G A ADAM19 Missense_Mutation p.P835S 0.35 tolerated(0.08) probably_damaging(1) TCGA-85-A4CL-01 5 158139975 158139975 G T EBF1 Intron 0.12 TCGA-85-A4CL-01 5 158696019 158696019 C G UBLCP1 Silent p.L32L 0.30 TCGA-85-A4CL-01 5 160973420 160973420 C G GABRB2 Splice_Site p.X26_splice 0.21 TCGA-85-A4CL-01 5 167553902 167553902 T A TENM2 Missense_Mutation p.C785S 0.29 deleterious(0) probably_damaging(0.917) TCGA-85-A4CL-01 5 169138991 169138991 G A DOCK2 Missense_Mutation p.R512Q 0.25 deleterious(0) probably_damaging(0.995) TCGA-85-A4CL-01 5 169509832 169509832 G T DOCK2 Missense_Mutation p.Q1821H 0.25 tolerated_low_confidence(0.25) benign(0) TCGA-85-A4CL-01 5 176831505 176831505 G A F12 Silent p.F265F 0.30 TCGA-85-A4CL-01 5 176884704 176884704 C T DBN1 Missense_Mutation p.E613K 0.38 deleterious(0) possibly_damaging(0.46) TCGA-85-A4CL-01 5 26881499 26881499 G T CDH9 Missense_Mutation p.L706M 0.29 tolerated(0.21) probably_damaging(0.999) TCGA-85-A4CL-01 5 32712102 32712102 C G NPR3 Missense_Mutation p.P74A 0.36 deleterious(0) probably_damaging(1) TCGA-85-A4CL-01 5 33624367 33624367 C G ADAMTS12 Silent p.V704V 0.31 TCGA-85-A4CL-01 5 38407987 38407987 C T EGFLAM Nonsense_Mutation p.Q410* 0.15 TCGA-85-A4CL-01 5 39202007 39202007 G A FYB Silent p.T362T 0.15 TCGA-85-A4CL-01 5 45645362 45645362 C A HCN1 Missense_Mutation p.R258S 0.27 deleterious(0) probably_damaging(0.994) TCGA-85-A4CL-01 5 50137956 50137956 G A PARP8 3'UTR 0.20 TCGA-85-A4CL-01 5 52096289 52096289 G T PELO Nonsense_Mutation p.E21* 0.28 TCGA-85-A4CL-01 5 5262855 5262855 C T ADAMTS16 Silent p.V916V 0.31 TCGA-85-A4CL-01 5 59982837 59982837 T A DEPDC1B Missense_Mutation p.K89M 0.32 deleterious(0) probably_damaging(0.977) TCGA-85-A4CL-01 5 60455843 60455843 C A SMIM15 Missense_Mutation p.E52D 0.22 tolerated(0.12) benign(0.017) TCGA-85-A4CL-01 5 68524045 68524045 C A MRPS36 Nonsense_Mutation p.S42* 0.38 TCGA-85-A4CL-01 5 73931347 73931347 G A ENC1 Missense_Mutation p.P322S 0.14 tolerated(0.37) benign(0.077) TCGA-85-A4CL-01 5 73931590 73931590 G A ENC1 Silent p.L241L 0.11 TCGA-85-A4CL-01 5 74016297 74016297 C G HEXB Missense_Mutation p.L488V 0.19 deleterious(0.02) benign(0.197) TCGA-85-A4CL-01 5 74325667 74325667 C T GCNT4 Missense_Mutation p.E66K 0.28 tolerated(0.4) benign(0.034) TCGA-85-A4CL-01 5 79855362 79855362 C T ANKRD34B Silent p.G159G 0.31 TCGA-85-A4CL-01 5 80366365 80366365 G A RASGRF2 Missense_Mutation p.E200K 0.25 tolerated(0.07) possibly_damaging(0.752) TCGA-85-A4CL-01 5 86708428 86708428 G A CCNH Intron 0.17 TCGA-85-A4CL-01 5 88119700 88119700 C G MEF2C 5'UTR 0.13 TCGA-85-A4CL-01 5 90079868 90079868 G A GPR98 Silent p.E4549E 0.30 TCGA-85-A4CL-01 5 9190548 9190548 C T SEMA5A Silent p.L368L 0.25 TCGA-85-A4CL-01 5 95018285 95018285 C T SPATA9 Missense_Mutation p.D33N 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-85-A4CL-01 5 95748039 95748039 C G PCSK1 Missense_Mutation p.E289Q 0.08 tolerated(0.12) possibly_damaging(0.863) TCGA-85-A4CL-01 5 98194686 98194686 G A CHD1 Missense_Mutation p.H1520Y 0.39 tolerated(0.32) benign(0) TCGA-85-A4CL-01 6 112389518 112389518 G A WISP3 Missense_Mutation p.E252K 0.32 tolerated(0.07) possibly_damaging(0.641) TCGA-85-A4CL-01 6 117128141 117128141 C G GPRC6A Missense_Mutation p.E243Q 0.28 deleterious(0.01) probably_damaging(0.954) TCGA-85-A4CL-01 6 121576543 121576543 G A TBC1D32 Missense_Mutation p.S650L 0.18 deleterious(0.04) possibly_damaging(0.875) TCGA-85-A4CL-01 6 121638742 121638742 C T TBC1D32 Missense_Mutation p.D132N 0.21 deleterious(0.01) possibly_damaging(0.598) TCGA-85-A4CL-01 6 121768718 121768718 G A GJA1 Missense_Mutation p.G242E 0.32 tolerated(0.5) benign(0.004) TCGA-85-A4CL-01 6 123319019 123319019 G A CLVS2 Missense_Mutation p.E33K 0.37 tolerated(0.2) benign(0.232) TCGA-85-A4CL-01 6 124979534 124979534 T A NKAIN2 Splice_Site p.X158_splice 0.29 TCGA-85-A4CL-01 6 127607996 127607996 G A RNF146 Missense_Mutation p.E80K 0.24 tolerated(0.15) possibly_damaging(0.669) TCGA-85-A4CL-01 6 132032076 132032076 C G CTAGE9 Missense_Mutation p.E28Q 0.31 deleterious(0.05) possibly_damaging(0.55) TCGA-85-A4CL-01 6 132859434 132859434 G T TAAR9 Silent p.V2V 0.33 TCGA-85-A4CL-01 6 132874619 132874619 T A TAAR8 Missense_Mutation p.V263E 0.30 deleterious(0) probably_damaging(0.958) TCGA-85-A4CL-01 6 135254096 135254096 C G ALDH8A1 Missense_Mutation p.E223Q 0.27 tolerated(0.07) possibly_damaging(0.471) TCGA-85-A4CL-01 6 135521305 135521305 C G MYB Missense_Mutation p.Q598E 0.30 deleterious(0) probably_damaging(0.995) TCGA-85-A4CL-01 6 136597595 136597595 C G BCLAF1 Missense_Mutation p.R356S 0.12 deleterious(0.01) benign(0.402) TCGA-85-A4CL-01 6 137323011 137323011 G A IL20RA Missense_Mutation p.S449L 0.32 tolerated(0.12) possibly_damaging(0.698) TCGA-85-A4CL-01 6 144416216 144416216 C G SF3B5 3'UTR 0.25 TCGA-85-A4CL-01 6 149856763 149856763 C T PPIL4 Missense_Mutation p.D145N 0.33 deleterious(0.02) benign(0.139) TCGA-85-A4CL-01 6 150004617 150004617 G A LATS1 Silent p.T536T 0.26 TCGA-85-A4CL-01 6 150322167 150322167 G A RAET1K RNA 0.33 TCGA-85-A4CL-01 6 151936646 151936646 G A CCDC170 Missense_Mutation p.M593I 0.32 deleterious(0.02) benign(0.036) TCGA-85-A4CL-01 6 151939319 151939319 G A CCDC170 3'UTR 0.27 TCGA-85-A4CL-01 6 152734532 152734532 C A SYNE1 Missense_Mutation p.R2062L 0.19 benign(0.009) TCGA-85-A4CL-01 6 153292217 153292217 C A FBXO5 3'UTR 0.33 TCGA-85-A4CL-01 6 153292273 153292273 C A FBXO5 3'UTR 0.16 TCGA-85-A4CL-01 6 157522623 157522623 G T ARID1B Splice_Site p.X1632_splice 0.33 TCGA-85-A4CL-01 6 160769574 160769574 C T SLC22A3 Silent p.F41F 0.43 TCGA-85-A4CL-01 6 16306884 16306884 C T ATXN1 Silent p.L708L 0.21 TCGA-85-A4CL-01 6 165711558 165711558 C T C6orf118 Silent p.Q323Q 0.26 TCGA-85-A4CL-01 6 168316030 168316030 C T MLLT4 Nonsense_Mutation p.Q821* 0.31 TCGA-85-A4CL-01 6 17616866 17616866 G C NUP153 Nonsense_Mutation p.S1412* 0.14 TCGA-85-A4CL-01 6 18163152 18163152 G C KDM1B Missense_Mutation p.R101T 0.16 deleterious(0) probably_damaging(0.996) TCGA-85-A4CL-01 6 20212434 20212434 G C MBOAT1 Missense_Mutation p.S11C 0.11 tolerated(0.06) benign(0.401) TCGA-85-A4CL-01 6 30136190 30136190 G T TRIM15 Missense_Mutation p.Q197H 0.46 tolerated(0.05) benign(0.031) TCGA-85-A4CL-01 6 31323240 31323240 T C HLA-B Missense_Mutation p.Q250R 0.27 deleterious_low_confidence(0.01) probably_damaging(0.935) TCGA-85-A4CL-01 6 32821339 32821339 T - TAP1 Frame_Shift_Del p.V86Yfs*37 0.37 TCGA-85-A4CL-01 6 35393701 35393701 G C PPARD Missense_Mutation p.D391H 0.36 deleterious(0) probably_damaging(0.999) TCGA-85-A4CL-01 6 35393733 35393733 G C PPARD Missense_Mutation p.Q401H 0.40 deleterious(0.02) benign(0.016) TCGA-85-A4CL-01 6 39267310 39267310 G C KCNK17 Missense_Mutation p.P298A 0.38 tolerated(1) benign(0.001) TCGA-85-A4CL-01 6 41119073 41119073 G C TREML1 Missense_Mutation p.F142L 0.52 tolerated(0.63) benign(0.031) TCGA-85-A4CL-01 6 42997081 42997081 C G RRP36 3'UTR 0.27 TCGA-85-A4CL-01 6 6224998 6224998 G T F13A1 Missense_Mutation p.D298E 0.46 tolerated(0.69) probably_damaging(0.991) TCGA-85-A4CL-01 6 64029827 64029827 G C LGSN Missense_Mutation p.L8V 0.19 tolerated_low_confidence(0.42) benign(0.018) TCGA-85-A4CL-01 6 66044963 66044963 G T EYS Missense_Mutation p.A559D 0.28 tolerated(0.61) benign(0.007) TCGA-85-A4CL-01 6 71269542 71269542 G A FAM135A Missense_Mutation p.R1489K 0.44 deleterious(0) probably_damaging(0.992) TCGA-85-A4CL-01 6 7542218 7542218 C T DSP Missense_Mutation p.P24S 0.50 benign(0.058) TCGA-85-A4CL-01 6 84300996 84300996 C A SNAP91 Missense_Mutation p.A650S 0.29 tolerated(0.3) probably_damaging(0.97) TCGA-85-A4CL-01 6 86347027 86347027 C T SYNCRIP Silent p.Q141Q 0.29 TCGA-85-A4CL-01 6 89563430 89563430 T - RNGTT Frame_Shift_Del p.N317Ifs*30 0.17 TCGA-85-A4CL-01 6 89790830 89790830 C G PNRC1 Missense_Mutation p.R73G 0.31 tolerated_low_confidence(0.18) possibly_damaging(0.614) TCGA-85-A4CL-01 6 96054068 96054068 A T MANEA Silent p.T392T 0.28 TCGA-85-A4CL-01 6 97423954 97423954 G A KLHL32 Silent p.Q35Q 0.18 TCGA-85-A4CL-01 6 99883503 99883503 G A USP45 3'UTR 0.33 TCGA-85-A4CL-01 7 100549721 100549721 C T MUC3A Missense_Mutation p.S101L 0.11 deleterious(0.01) unknown(0) TCGA-85-A4CL-01 7 102856935 102856935 G C DPY19L2P2 RNA 0.39 TCGA-85-A4CL-01 7 102982341 102982341 C T DNAJC2 Missense_Mutation p.R42K 0.37 tolerated(0.29) benign(0.034) TCGA-85-A4CL-01 7 103270434 103270434 G A RELN Silent p.F885F 0.30 TCGA-85-A4CL-01 7 103270450 103270450 G C RELN Missense_Mutation p.T880S 0.28 tolerated(0.19) benign(0.038) TCGA-85-A4CL-01 7 103767296 103767296 C T ORC5 Silent p.%3D 0.23 TCGA-85-A4CL-01 7 107423793 107423793 G T SLC26A3 Missense_Mutation p.Q326K 0.38 tolerated(0.79) benign(0.012) TCGA-85-A4CL-01 7 108154912 108154912 C T PNPLA8 Missense_Mutation p.E342K 0.25 tolerated(0.32) benign(0.003) TCGA-85-A4CL-01 7 112424624 112424624 G A TMEM168 Missense_Mutation p.S86L 0.27 deleterious(0.01) probably_damaging(0.918) TCGA-85-A4CL-01 7 116862962 116862962 G C ST7 Missense_Mutation p.K562N 0.26 tolerated_low_confidence(0.21) benign(0.001) TCGA-85-A4CL-01 7 117359575 117359575 C T CTTNBP2 Missense_Mutation p.E1543K 0.23 deleterious(0) probably_damaging(0.99) TCGA-85-A4CL-01 7 119915653 119915653 G A KCND2 Missense_Mutation p.E323K 0.41 deleterious(0) probably_damaging(1) TCGA-85-A4CL-01 7 123101503 123101503 C G IQUB Missense_Mutation p.E639Q 0.08 tolerated(0.15) benign(0.056) TCGA-85-A4CL-01 7 128490494 128490494 C T FLNC Silent p.F1785F 0.37 TCGA-85-A4CL-01 7 128492703 128492703 G A FLNC Silent p.L1967L 0.12 TCGA-85-A4CL-01 7 129474806 129474806 C T UBE2H Missense_Mutation p.E175K 0.38 deleterious(0.01) benign(0.151) TCGA-85-A4CL-01 7 129945717 129945717 G A CPA4 Missense_Mutation p.R183Q 0.11 deleterious(0.03) probably_damaging(0.936) TCGA-85-A4CL-01 7 138969131 138969131 G A UBN2 Silent p.K1160K 0.26 TCGA-85-A4CL-01 7 139575412 139575412 G A TBXAS1 Missense_Mutation p.R72K 0.34 tolerated(0.3) possibly_damaging(0.877) TCGA-85-A4CL-01 7 139826556 139826556 C G KDM7A Missense_Mutation p.D257H 0.23 deleterious(0) probably_damaging(0.987) TCGA-85-A4CL-01 7 142637732 142637732 C T C7orf34 3'UTR 0.17 TCGA-85-A4CL-01 7 142658027 142658027 G A KEL Missense_Mutation p.R130W 0.24 tolerated(0.16) benign(0.075) TCGA-85-A4CL-01 7 142749675 142749675 C T OR6V1 Missense_Mutation p.L80F 0.11 deleterious(0) probably_damaging(0.999) TCGA-85-A4CL-01 7 143826568 143826568 C T OR2A14 Silent p.R121R 0.34 TCGA-85-A4CL-01 7 144097332 144097332 G A NOBOX Silent p.A306A 0.31 TCGA-85-A4CL-01 7 146471409 146471409 C T CNTNAP2 Silent p.F48F 0.24 TCGA-85-A4CL-01 7 147092837 147092837 G A CNTNAP2 Silent p.A545A 0.40 TCGA-85-A4CL-01 7 150935575 150935575 C T CHPF2 Silent p.L709L 0.43 TCGA-85-A4CL-01 7 156799327 156799327 G T MNX1 Missense_Mutation p.A233E 0.33 deleterious(0.02) possibly_damaging(0.903) TCGA-85-A4CL-01 7 21750217 21750217 G C DNAH11 Missense_Mutation p.E2251Q 0.25 possibly_damaging(0.615) TCGA-85-A4CL-01 7 2749438 2749438 C T AMZ1 Silent p.I312I 0.16 TCGA-85-A4CL-01 7 28220234 28220234 G C JAZF1 5'UTR 0.24 TCGA-85-A4CL-01 7 37960383 37960383 C T EPDR1 5'UTR 0.20 TCGA-85-A4CL-01 7 43540341 43540341 G C HECW1 Missense_Mutation p.E1161Q 0.24 tolerated(0.3) benign(0.097) TCGA-85-A4CL-01 7 48411977 48411977 C T ABCA13 Silent p.F3672F 0.34 TCGA-85-A4CL-01 7 50358695 50358695 C G IKZF1 Nonsense_Mutation p.S13* 0.28 TCGA-85-A4CL-01 7 55540645 55540645 G A VOPP1 Missense_Mutation p.P141L 0.19 deleterious_low_confidence(0.02) benign(0) TCGA-85-A4CL-01 7 64167579 64167579 C T ZNF107 Silent p.L299L 0.19 TCGA-85-A4CL-01 7 72400516 72400516 C G POM121 Nonsense_Mutation p.S116* 0.26 TCGA-85-A4CL-01 7 72436376 72436376 C T TRIM74 Missense_Mutation p.E105K 0.27 tolerated(0.3) possibly_damaging(0.513) TCGA-85-A4CL-01 7 73020302 73020302 G C MLXIPL Nonsense_Mutation p.S253* 0.46 TCGA-85-A4CL-01 7 73152137 73152137 G C ABHD11 Intron 0.42 TCGA-85-A4CL-01 7 74565075 74565075 G T GTF2IRD2B Missense_Mutation p.W941L 0.32 tolerated(1) probably_damaging(0.938) TCGA-85-A4CL-01 7 74565076 74565076 G T GTF2IRD2B Missense_Mutation p.W941C 0.31 deleterious(0.01) probably_damaging(0.994) TCGA-85-A4CL-01 7 75028412 75028412 C T TRIM73 Silent p.S65S 0.53 TCGA-85-A4CL-01 7 80285998 80285998 G A CD36 Missense_Mutation p.R88K 0.22 tolerated(0.73) benign(0.003) TCGA-85-A4CL-01 7 81643784 81643784 G A CACNA2D1 Silent p.F385F 0.45 TCGA-85-A4CL-01 7 83590959 83590959 C T SEMA3A Missense_Mutation p.D682N 0.18 tolerated(0.17) benign(0.159) TCGA-85-A4CL-01 7 87564416 87564416 G C ADAM22 Missense_Mutation p.R54P 0.30 deleterious(0) probably_damaging(0.999) TCGA-85-A4CL-01 7 91875773 91875773 G A ANKIB1 5'UTR 0.19 TCGA-85-A4CL-01 7 91875774 91875774 G A ANKIB1 5'UTR 0.19 TCGA-85-A4CL-01 7 92119141 92119141 G C PEX1 Missense_Mutation p.P1175A 0.08 deleterious(0.05) benign(0.048) TCGA-85-A4CL-01 7 94293359 94293359 G T PEG10 Missense_Mutation p.R164L 0.25 tolerated(0.05) benign(0.019) TCGA-85-A4CL-01 7 99965106 99965106 G A PILRB 3'UTR 0.48 TCGA-85-A4CL-01 8 109498750 109498750 C G EMC2 Missense_Mutation p.R273G 0.18 tolerated(0.37) benign(0.001) TCGA-85-A4CL-01 8 114111049 114111049 C T CSMD3 Missense_Mutation p.D285N 0.28 tolerated(0.44) possibly_damaging(0.677) TCGA-85-A4CL-01 8 120651052 120651052 T C ENPP2 5'UTR 0.65 TCGA-85-A4CL-01 8 124369936 124369936 G A ATAD2 Silent p.L475L 0.36 TCGA-85-A4CL-01 8 131149227 131149227 C T ASAP1 Missense_Mutation p.E380K 0.21 deleterious(0) benign(0.293) TCGA-85-A4CL-01 8 133044216 133044216 G A OC90 Silent p.L315L 0.34 TCGA-85-A4CL-01 8 139626107 139626107 C T COL22A1 Intron 0.30 TCGA-85-A4CL-01 8 145668163 145668163 C T TONSL Missense_Mutation p.E159K 0.48 deleterious(0) probably_damaging(0.998) TCGA-85-A4CL-01 8 146033195 146033195 C G ZNF517 Missense_Mutation p.F298L 0.31 deleterious(0) possibly_damaging(0.453) TCGA-85-A4CL-01 8 146068415 146068415 G C ZNF7 Missense_Mutation p.K641N 0.28 deleterious(0) probably_damaging(0.999) TCGA-85-A4CL-01 8 16976263 16976263 G T MICU3 Missense_Mutation p.K524N 0.15 deleterious(0) possibly_damaging(0.572) TCGA-85-A4CL-01 8 21955747 21955747 G A FAM160B2 Missense_Mutation p.E232K 0.22 tolerated(0.36) benign(0.446) TCGA-85-A4CL-01 8 22473311 22473311 A T CCAR2 Silent p.P498P 0.30 TCGA-85-A4CL-01 8 26365639 26365639 C A PNMA2 Silent p.R211R 0.21 TCGA-85-A4CL-01 8 27168491 27168491 C T TRIM35 Missense_Mutation p.E88K 0.24 deleterious(0.05) benign(0.124) TCGA-85-A4CL-01 8 30705645 30705645 C G TEX15 Missense_Mutation p.D297H 0.18 deleterious(0.01) possibly_damaging(0.863) TCGA-85-A4CL-01 8 3216787 3216787 C - CSMD1 Frame_Shift_Del p.G1064Efs*4 0.19 TCGA-85-A4CL-01 8 38187013 38187013 C G WHSC1L1 Silent p.G488G 0.27 TCGA-85-A4CL-01 8 42693329 42693329 C G THAP1 Missense_Mutation p.E140Q 0.28 tolerated(0.05) probably_damaging(0.96) TCGA-85-A4CL-01 8 54141836 54141836 C A OPRK1 3'UTR 0.61 TCGA-85-A4CL-01 8 57354199 57354199 C T PENK Missense_Mutation p.E146K 0.45 tolerated(0.12) benign(0.211) TCGA-85-A4CL-01 8 69058575 69058575 C G PREX2 Missense_Mutation p.L1407V 0.57 deleterious(0.01) probably_damaging(0.978) TCGA-85-A4CL-01 8 77620052 77620052 C A ZFHX4 Silent p.L954L 0.48 TCGA-85-A4CL-01 8 85097202 85097202 C G RALYL 5'UTR 0.20 TCGA-85-A4CL-01 9 101817629 101817629 G A COL15A1 Missense_Mutation p.G1056D 0.30 deleterious(0) probably_damaging(0.998) TCGA-85-A4CL-01 9 106857746 106857746 C T SMC2 Silent p.F27F 0.24 TCGA-85-A4CL-01 9 107361608 107361608 C A OR13C5 Silent p.V29V 0.14 TCGA-85-A4CL-01 9 114178597 114178597 C T KIAA0368 Missense_Mutation p.M751I 0.27 tolerated(0.32) benign(0.002) TCGA-85-A4CL-01 9 124441057 124441057 C T DAB2IP Silent p.V47V 0.29 TCGA-85-A4CL-01 9 132484595 132484595 C T PRRX2 Silent p.F242F 0.16 TCGA-85-A4CL-01 9 132662335 132662335 C G FNBP1 Missense_Mutation p.M532I 0.23 tolerated(0.45) benign(0) TCGA-85-A4CL-01 9 133756018 133756018 G C ABL1 Missense_Mutation p.E568Q 0.43 tolerated_low_confidence(0.27) benign(0.248) TCGA-85-A4CL-01 9 135203329 135203329 G A SETX Missense_Mutation p.S1219L 0.20 deleterious(0.04) benign(0.013) TCGA-85-A4CL-01 9 136260872 136260872 C T C9orf96 Missense_Mutation p.S283L 0.22 tolerated(0.13) benign(0.052) TCGA-85-A4CL-01 9 136599073 136599073 C A SARDH Missense_Mutation p.G75C 0.31 deleterious(0) probably_damaging(1) TCGA-85-A4CL-01 9 138378679 138378679 A T PPP1R26 Missense_Mutation p.S775C 0.24 tolerated(0.14) benign(0.176) TCGA-85-A4CL-01 9 139733489 139733489 C T RABL6 Missense_Mutation p.S471L 0.30 deleterious(0) possibly_damaging(0.519) TCGA-85-A4CL-01 9 139748298 139748298 C T MAMDC4 Missense_Mutation p.P175L 0.10 tolerated(0.05) possibly_damaging(0.682) TCGA-85-A4CL-01 9 139929475 139929475 C T C9orf139 Missense_Mutation p.S181F 0.38 deleterious_low_confidence(0.01) unknown(0) TCGA-85-A4CL-01 9 140128709 140128709 G A SLC34A3 Silent p.V358V 0.31 TCGA-85-A4CL-01 9 140329722 140329722 G T ENTPD8 Silent p.L410L 0.23 TCGA-85-A4CL-01 9 2648309 2648309 G C VLDLR Missense_Mutation p.E642Q 0.48 tolerated(0.13) benign(0.371) TCGA-85-A4CL-01 9 27044781 27044781 G C IFT74 Missense_Mutation p.E366Q 0.48 tolerated(0.11) benign(0.338) TCGA-85-A4CL-01 9 32541750 32541750 C G TOPORS Missense_Mutation p.E925Q 0.06 deleterious_low_confidence(0.01) unknown(0) TCGA-85-A4CL-01 9 32634719 32634719 C T TAF1L Missense_Mutation p.E287K 0.26 tolerated(0.58) possibly_damaging(0.777) TCGA-85-A4CL-01 9 34372984 34372984 C A KIAA1161 5'UTR 0.25 TCGA-85-A4CL-01 9 35377575 35377575 G A UNC13B Missense_Mutation p.E567K 0.16 deleterious(0.03) benign(0.201) TCGA-85-A4CL-01 9 35546546 35546546 G C RUSC2 Missense_Mutation p.E10Q 0.14 deleterious(0) probably_damaging(0.993) TCGA-85-A4CL-01 9 35547637 35547637 C T RUSC2 Silent p.C373C 0.16 TCGA-85-A4CL-01 9 35706849 35706849 C T TLN1 Silent p.L1668L 0.11 TCGA-85-A4CL-01 9 36171042 36171042 G T CCIN Missense_Mutation p.V515L 0.20 tolerated(0.43) benign(0.008) TCGA-85-A4CL-01 9 4585573 4585573 G A SLC1A1 3'UTR 0.34 TCGA-85-A4CL-01 9 6330228 6330228 C G TPD52L3 3'UTR 0.48 TCGA-85-A4CL-01 9 70490017 70490017 C T CBWD5 Missense_Mutation p.D18N 0.12 deleterious(0.04) benign(0.149) TCGA-85-A4CL-01 9 82268983 82268983 C G TLE4 Missense_Mutation p.S201C 0.24 deleterious(0.03) benign(0.289) TCGA-85-A4CL-01 9 84530871 84530871 C T SPATA31D5P RNA 0.35 TCGA-85-A4CL-01 9 84562563 84562563 G C RP11-383M4.6 Intron 0.42 TCGA-85-A4CL-01 9 88162025 88162025 C T AGTPBP1 Silent p.%3D 0.21 TCGA-85-A4CL-01 9 95888699 95888699 G C NINJ1 Missense_Mutation p.I99M 0.43 deleterious(0.04) probably_damaging(0.98) TCGA-85-A4CL-01 X 107911639 107911639 G T COL4A5 Missense_Mutation p.G1232V 0.52 unknown(0) TCGA-85-A4CL-01 X 123525968 123525968 C T TENM1 Silent p.Q1874Q 0.56 TCGA-85-A4CL-01 X 12736686 12736686 G C FRMPD4 Missense_Mutation p.L1247F 0.55 tolerated_low_confidence(0.07) benign(0.14) TCGA-85-A4CL-01 X 136113677 136113677 C T GPR101 Missense_Mutation p.A53T 0.52 tolerated(0.06) benign(0.345) TCGA-85-A4CL-01 X 136113756 136113756 G A GPR101 Silent p.I26I 0.52 TCGA-85-A4CL-01 X 140335790 140335790 C G SPANXC Missense_Mutation p.V52L 0.26 tolerated(0.16) possibly_damaging(0.788) TCGA-85-A4CL-01 X 140993583 140993583 T A MAGEC1 Silent p.P131P 0.55 TCGA-85-A4CL-01 X 140995932 140995933 - T MAGEC1 Frame_Shift_Ins p.L915Ffs*41 0.34 TCGA-85-A4CL-01 X 141291672 141291672 C A MAGEC2 Missense_Mutation p.E34D 0.55 tolerated(0.14) possibly_damaging(0.636) TCGA-85-A4CL-01 X 19378896 19378896 C T MAP3K15 Missense_Mutation p.E1305K 0.19 tolerated(0.86) benign(0.002) TCGA-85-A4CL-01 X 24229099 24229099 C T ZFX Missense_Mutation p.S675L 0.64 deleterious(0) probably_damaging(0.992) TCGA-85-A4CL-01 X 37652986 37652986 C T CYBB Missense_Mutation p.P136S 0.52 tolerated(1) benign(0.001) TCGA-85-A4CL-01 X 39934032 39934032 C T BCOR Silent p.L189L 0.41 TCGA-85-A4CL-01 X 53581834 53581834 C G HUWE1 Missense_Mutation p.D2752H 0.15 benign(0.001) TCGA-85-A4CL-01 X 54497828 54497828 G A FGD1 Missense_Mutation p.R134C 0.52 tolerated_low_confidence(0.08) possibly_damaging(0.876) TCGA-85-A4CL-01 X 55479417 55479417 G A MAGEH1 Missense_Mutation p.E204K 0.53 deleterious_low_confidence(0.01) benign(0.176) TCGA-85-A4CL-01 X 57935379 57935379 C T ZXDA Silent p.T492T 0.68 TCGA-85-A4CL-01 X 64138922 64138922 C A ZC4H2 Missense_Mutation p.K187N 0.56 deleterious(0) probably_damaging(0.999) TCGA-85-A4CL-01 X 69507618 69507618 C T PDZD11 Silent p.V97V 0.58 TCGA-85-A4CL-01 X 69510574 69510574 G A KIF4A Missense_Mutation p.D52N 0.21 tolerated(0.13) probably_damaging(1) TCGA-85-A4CL-01 X 73041383 73041383 C G XIST RNA 0.69 TCGA-85-A4CL-01 X 73072124 73072124 G A XIST RNA 0.56 TCGA-85-A4CL-01 X 79999598 79999598 C T BRWD3 Nonsense_Mutation p.W249* 0.53 TCGA-85-A4CL-01 X 8553316 8553316 G A KAL1 Missense_Mutation p.S283F 0.56 deleterious(0) possibly_damaging(0.697) TCGA-85-A4CL-01 X 86877418 86877418 C A KLHL4 Missense_Mutation p.P378T 0.53 deleterious(0.01) probably_damaging(0.925) TCGA-85-A4CL-01 Y 4966455 4966455 C A PCDH11Y Missense_Mutation p.P279Q 0.51 deleterious(0) probably_damaging(1) TCGA-85-A4CN-01 10 118138915 118138915 T A CCDC172 3'UTR 0.44 TCGA-85-A4CN-01 10 21962277 21962277 A T MLLT10 Splice_Site p.X351_splice 0.33 TCGA-85-A4CN-01 10 38245973 38245973 T A ZNF25 Silent p.V71V 0.32 TCGA-85-A4CN-01 10 38245975 38245975 C A ZNF25 Missense_Mutation p.V71L 0.33 tolerated(0.31) benign(0.001) TCGA-85-A4CN-01 10 43279809 43279809 G T BMS1 Splice_Site 0.37 TCGA-85-A4CN-01 10 59955749 59955749 A T IPMK 3'UTR 0.29 TCGA-85-A4CN-01 10 95557519 95557519 A T LGI1 Missense_Mutation p.T545S 0.30 tolerated(0.06) probably_damaging(0.951) TCGA-85-A4CN-01 11 102196243 102196243 G C BIRC3 Missense_Mutation p.R300S 0.20 deleterious(0.02) probably_damaging(0.984) TCGA-85-A4CN-01 11 104820449 104820449 T A CASP4 Missense_Mutation p.D201V 0.23 deleterious(0) probably_damaging(1) TCGA-85-A4CN-01 11 117307934 117307934 G A DSCAML1 Nonsense_Mutation p.R1602* 0.23 TCGA-85-A4CN-01 11 120702575 120702575 G A GRIK4 Missense_Mutation p.E176K 0.21 tolerated(0.06) benign(0.304) TCGA-85-A4CN-01 11 4976533 4976533 G C OR51A2 Missense_Mutation p.I137M 0.13 deleterious(0) probably_damaging(0.928) TCGA-85-A4CN-01 11 55587548 55587548 G T OR5D18 Missense_Mutation p.G148V 0.17 tolerated(0.07) benign(0.046) TCGA-85-A4CN-01 11 58949712 58949712 A G DTX4 Missense_Mutation p.K238E 0.30 tolerated(0.49) benign(0.065) TCGA-85-A4CN-01 11 68540775 68540775 T C CPT1A Silent p.P566P 0.28 TCGA-85-A4CN-01 11 82924090 82924090 A G ANKRD42 Intron 0.16 TCGA-85-A4CN-01 12 10601916 10601916 T C KLRC1 Missense_Mutation p.R137G 0.24 tolerated(0.24) benign(0.125) TCGA-85-A4CN-01 12 117271714 117271714 G A RNFT2 Missense_Mutation p.G334R 0.19 tolerated(0.25) possibly_damaging(0.706) TCGA-85-A4CN-01 12 120760074 120760074 G A PLA2G1B Silent p.N123N 0.21 TCGA-85-A4CN-01 12 122359229 122359229 A T WDR66 Missense_Mutation p.E6D 0.26 tolerated_low_confidence(0.23) possibly_damaging(0.636) TCGA-85-A4CN-01 12 1372267 1372267 T G ERC1 Missense_Mutation p.I852R 0.17 deleterious(0) probably_damaging(0.984) TCGA-85-A4CN-01 12 16507196 16507196 C G MGST1 Missense_Mutation p.L4V 0.28 tolerated(0.1) benign(0.008) TCGA-85-A4CN-01 12 2717695 2717695 C A CACNA1C Silent p.I1145I 0.27 TCGA-85-A4CN-01 12 40745438 40745438 A T LRRK2 Missense_Mutation p.H2160L 0.21 tolerated(0.66) benign(0) TCGA-85-A4CN-01 12 55688516 55688516 A G OR6C6 Silent p.C167C 0.24 TCGA-85-A4CN-01 12 57587470 57587470 T G LRP1 Splice_Site p.X2602_splice 0.08 TCGA-85-A4CN-01 13 111088678 111088678 G T COL4A2 Silent p.A263A 0.45 TCGA-85-A4CN-01 13 24465333 24465333 A G C1QTNF9B 3'Flank 0.41 TCGA-85-A4CN-01 13 38266191 38266191 G A TRPC4 Silent p.N393N 0.44 TCGA-85-A4CN-01 14 19553573 19553573 G A POTEG Missense_Mutation p.A53T 0.16 tolerated_low_confidence(0.08) benign(0.002) TCGA-85-A4CN-01 14 20020064 20020064 C T POTEM Missense_Mutation p.A53T 0.26 tolerated_low_confidence(0.08) benign(0.001) TCGA-85-A4CN-01 14 75928203 75928203 G A JDP2 Silent p.K103K 0.20 TCGA-85-A4CN-01 14 90651019 90651019 C T KCNK13 Missense_Mutation p.P300L 0.39 tolerated(0.78) benign(0.007) TCGA-85-A4CN-01 14 92171001 92171001 C T CATSPERB Missense_Mutation p.E171K 0.30 tolerated(0.38) benign(0.059) TCGA-85-A4CN-01 15 25940067 25940067 T C ATP10A Missense_Mutation p.K996R 0.35 tolerated(0.68) benign(0.003) TCGA-85-A4CN-01 15 26806081 26806081 G T GABRB3 Silent p.R360R 0.39 TCGA-85-A4CN-01 15 34030667 34030667 A G RYR3 Missense_Mutation p.Y2511C 0.24 probably_damaging(0.999) TCGA-85-A4CN-01 15 34129929 34129929 C A RYR3 Missense_Mutation p.F3916L 0.27 probably_damaging(0.995) TCGA-85-A4CN-01 15 42108808 42108808 C T MAPKBP1 Silent p.D521D 0.19 TCGA-85-A4CN-01 15 44211655 44211655 A T FRMD5 Splice_Site p.X110_splice 0.23 TCGA-85-A4CN-01 15 57730463 57730463 G T CGNL1 Missense_Mutation p.S89I 0.24 deleterious(0.02) benign(0.258) TCGA-85-A4CN-01 15 62300949 62300949 C A VPS13C Missense_Mutation p.M341I 0.19 tolerated(0.57) benign(0.011) TCGA-85-A4CN-01 15 76463462 76463462 G T C15orf27 Missense_Mutation p.R214S 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-85-A4CN-01 15 78474351 78474352 CA T ACSBG1 Frame_Shift_Del p.W344Rfs*13 0.18 TCGA-85-A4CN-01 16 19471565 19471565 T C TMC5 Silent p.L353L 0.16 TCGA-85-A4CN-01 16 23607518 23607518 G A NDUFAB1 Missense_Mutation p.L32F 0.22 tolerated(0.17) benign(0.014) TCGA-85-A4CN-01 16 24981861 24981861 T C ARHGAP17 Missense_Mutation p.E80G 0.25 deleterious(0.01) probably_damaging(0.911) TCGA-85-A4CN-01 16 28883101 28883101 G T SH2B1 Missense_Mutation p.G437V 0.34 tolerated(0.16) benign(0.267) TCGA-85-A4CN-01 16 32077594 32077594 T A IGHV3OR16-9 Missense_Mutation p.I70N 0.15 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-85-A4CN-01 16 57718360 57718360 C T GPR97 Silent p.T407T 0.25 TCGA-85-A4CN-01 17 15134159 15134159 C T PMP22 3'UTR 0.30 TCGA-85-A4CN-01 17 18022665 18022665 G A MYO15A Missense_Mutation p.G184E 0.25 possibly_damaging(0.861) TCGA-85-A4CN-01 17 29654561 29654561 A T NF1 Missense_Mutation p.K1771N 0.27 tolerated(0.09) benign(0.019) TCGA-85-A4CN-01 17 57125045 57125045 T C TRIM37 Missense_Mutation p.M556V 0.17 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-85-A4CN-01 17 65888040 65888040 C G BPTF Missense_Mutation p.R649G 0.26 probably_damaging(0.955) TCGA-85-A4CN-01 17 6941689 6941689 C T SLC16A13 Missense_Mutation p.L188F 0.11 deleterious(0) probably_damaging(1) TCGA-85-A4CN-01 17 6941691 6941691 C T SLC16A13 Silent p.L188L 0.10 TCGA-85-A4CN-01 17 6941799 6941799 C A SLC16A13 Silent p.T224T 0.10 TCGA-85-A4CN-01 17 70645389 70645389 G T SLC39A11 Silent p.I237I 0.09 TCGA-85-A4CN-01 17 74563625 74563625 T C ST6GALNAC2 Silent p.K289K 0.32 TCGA-85-A4CN-01 17 7577106 7577106 G C TP53 Missense_Mutation p.P278A 0.19 deleterious(0.01) probably_damaging(1) TCGA-85-A4CN-01 17 76867005 76867005 T G TIMP2 Silent p.G105G 0.26 TCGA-85-A4CN-01 17 79078469 79078469 G A BAIAP2 Missense_Mutation p.E408K 0.40 deleterious(0.01) benign(0.19) TCGA-85-A4CN-01 17 7950382 7950382 G A ALOX15B Missense_Mutation p.G482D 0.12 tolerated(0.7) benign(0.019) TCGA-85-A4CN-01 17 8065076 8065076 G A VAMP2 Silent p.D44D 0.40 TCGA-85-A4CN-01 17 9538750 9538750 C T WDR16 Missense_Mutation p.T450I 0.22 tolerated(0.13) benign(0.002) TCGA-85-A4CN-01 18 13885081 13885081 C T MC2R Missense_Mutation p.R146H 0.09 deleterious(0) benign(0.033) TCGA-85-A4CN-01 18 19424098 19424098 G A MIB1 Missense_Mutation p.G699R 0.24 deleterious(0) probably_damaging(0.969) TCGA-85-A4CN-01 18 21739454 21739454 G A CABYR Missense_Mutation p.R187Q 0.10 deleterious(0.01) benign(0.047) TCGA-85-A4CN-01 18 44555130 44555130 C A TCEB3C Missense_Mutation p.V362F 0.02 deleterious(0) benign(0.224) TCGA-85-A4CN-01 18 44555302 44555302 C T TCEB3C Silent p.A304A 0.04 TCGA-85-A4CN-01 18 9513092 9513092 A C RALBP1 Silent p.R17R 0.30 TCGA-85-A4CN-01 19 11303705 11303705 C A KANK2 Missense_Mutation p.A351S 0.25 tolerated(0.13) probably_damaging(0.998) TCGA-85-A4CN-01 19 11617165 11617165 A G ECSIT Missense_Mutation p.L377P 0.21 deleterious(0) probably_damaging(1) TCGA-85-A4CN-01 19 11660698 11660698 C G CNN1 3'UTR 0.22 TCGA-85-A4CN-01 19 14877061 14877061 T C EMR2 Missense_Mutation p.N207S 0.31 tolerated(0.29) benign(0.038) TCGA-85-A4CN-01 19 18333059 18333059 A T PDE4C Missense_Mutation p.I106N 0.35 deleterious_low_confidence(0) benign(0.027) TCGA-85-A4CN-01 19 22847840 22847840 G C ZNF492 Missense_Mutation p.A457P 0.40 deleterious(0.01) benign(0.342) TCGA-85-A4CN-01 19 24010255 24010255 C A RPSAP58 Missense_Mutation p.P98T 0.27 deleterious(0.04) benign(0.099) TCGA-85-A4CN-01 19 3013714 3013714 C A TLE2 Missense_Mutation p.A276S 0.16 tolerated(0.42) benign(0.245) TCGA-85-A4CN-01 19 3013715 3013715 C A TLE2 Missense_Mutation p.L275F 0.15 tolerated(0.26) possibly_damaging(0.793) TCGA-85-A4CN-01 19 38800141 38800141 C A YIF1B Silent p.T67T 0.30 TCGA-85-A4CN-01 19 40368558 40368558 G C FCGBP Missense_Mutation p.P4264A 0.18 possibly_damaging(0.539) TCGA-85-A4CN-01 19 44891611 44891611 C A ZNF285 Nonsense_Mutation p.G266* 0.27 TCGA-85-A4CN-01 19 48385353 48385353 A G SULT2A1 Missense_Mutation p.C154R 0.30 deleterious(0.02) possibly_damaging(0.532) TCGA-85-A4CN-01 19 52660478 52660478 T C ZNF836 Missense_Mutation p.Q153R 0.36 tolerated(0.12) possibly_damaging(0.885) TCGA-85-A4CN-01 19 52819217 52819217 T C ZNF480 Splice_Site p.X110_splice 0.24 TCGA-85-A4CN-01 19 53741530 53741530 A G ZNF677 Silent p.S150S 0.28 TCGA-85-A4CN-01 19 55046856 55046856 C A KIR3DX1 Missense_Mutation p.A134E 0.23 tolerated(0.67) benign(0.064) TCGA-85-A4CN-01 19 55526406 55526406 C A GP6 Missense_Mutation p.G303W 0.31 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-85-A4CN-01 19 57867560 57867560 A G ZNF304 Missense_Mutation p.Q108R 0.07 deleterious(0.03) possibly_damaging(0.636) TCGA-85-A4CN-01 19 57867593 57867593 G T ZNF304 Missense_Mutation p.R119L 0.18 tolerated(0.64) benign(0.04) TCGA-85-A4CN-01 19 9529186 9529186 G T ZNF266 Missense_Mutation p.T10K 0.08 deleterious(0.01) benign(0.026) TCGA-85-A4CN-01 19 972011 972011 G T ARID3A Silent p.G576G 0.62 TCGA-85-A4CN-01 1 147231113 147231113 C T GJA5 Nonsense_Mutation p.W78* 0.44 TCGA-85-A4CN-01 1 158687353 158687353 G A OR6K3 Silent p.L185L 0.54 TCGA-85-A4CN-01 1 160654641 160654641 G C CD48 Intron 0.51 TCGA-85-A4CN-01 1 160797616 160797616 C T LY9 3'UTR 0.22 TCGA-85-A4CN-01 1 17331224 17331224 T A ATP13A2 Missense_Mutation p.Q147L 0.25 deleterious(0.03) benign(0.046) TCGA-85-A4CN-01 1 197115315 197115316 CG A ASPM Frame_Shift_Del p.A85Rfs*34 0.29 TCGA-85-A4CN-01 1 236205511 236205511 G A NID1 Silent p.D278D 0.50 TCGA-85-A4CN-01 1 247695157 247695157 G A OR2C3 Silent p.Y219Y 0.21 TCGA-85-A4CN-01 1 248112970 248112970 A G OR2L8 Missense_Mutation p.K271E 0.51 tolerated(0.05) benign(0.127) TCGA-85-A4CN-01 1 43777725 43777725 G A TIE1 Missense_Mutation p.R518H 0.36 tolerated(0.56) benign(0.01) TCGA-85-A4CN-01 1 54370454 54370454 C A DIO1 Silent p.V151V 0.27 TCGA-85-A4CN-01 1 57341770 57341770 G T C8A Missense_Mutation p.D118Y 0.29 deleterious(0) probably_damaging(0.928) TCGA-85-A4CN-01 1 65831598 65831598 T C DNAJC6 Silent p.Y125Y 0.35 TCGA-85-A4CN-01 1 71477807 71477807 A G PTGER3 Intron 0.26 TCGA-85-A4CN-01 1 89250331 89250331 A T PKN2 Missense_Mutation p.E332V 0.27 deleterious(0) possibly_damaging(0.835) TCGA-85-A4CN-01 1 99764695 99764695 T A LPPR4 Missense_Mutation p.Y215N 0.29 deleterious(0) probably_damaging(0.993) TCGA-85-A4CN-01 20 23472436 23472436 C A CST8 Missense_Mutation p.N44K 0.26 tolerated(0.13) probably_damaging(0.989) TCGA-85-A4CN-01 22 23615881 23615881 C T BCR Missense_Mutation p.R679C 0.09 deleterious(0) probably_damaging(0.965) TCGA-85-A4CN-01 2 125671693 125671693 T A CNTNAP5 Missense_Mutation p.I1250N 0.26 deleterious(0) possibly_damaging(0.776) TCGA-85-A4CN-01 2 128388395 128388395 C T MYO7B Nonsense_Mutation p.Q1591* 0.19 TCGA-85-A4CN-01 2 141528548 141528548 C T LRP1B Missense_Mutation p.G1843D 0.08 probably_damaging(0.931) TCGA-85-A4CN-01 2 160803219 160803219 C A PLA2R1 Intron 0.30 TCGA-85-A4CN-01 2 163302766 163302766 T C KCNH7 Missense_Mutation p.Q439R 0.22 tolerated(0.44) benign(0.001) TCGA-85-A4CN-01 2 166898853 166898853 G T SCN1A Missense_Mutation p.Q709K 0.22 tolerated(0.93) benign(0.164) TCGA-85-A4CN-01 2 185802881 185802881 G T ZNF804A Missense_Mutation p.V920L 0.27 tolerated(0.29) benign(0.001) TCGA-85-A4CN-01 2 189918664 189918664 C G COL5A2 Missense_Mutation p.G819A 0.19 unknown(0) TCGA-85-A4CN-01 2 210642196 210642196 G A UNC80 Silent p.E171E 0.29 TCGA-85-A4CN-01 2 21251313 21251313 G T APOB Missense_Mutation p.A572E 0.26 benign(0.197) TCGA-85-A4CN-01 2 225343063 225343063 C T CUL3 Splice_Site p.X677_splice 0.18 TCGA-85-A4CN-01 2 239975252 239975252 C T HDAC4 Missense_Mutation p.R1040H 0.38 tolerated(0.51) benign(0.002) TCGA-85-A4CN-01 2 26739379 26739379 A G OTOF Missense_Mutation p.L139P 0.21 tolerated(0.05) benign(0.002) TCGA-85-A4CN-01 2 27459290 27459290 C T CAD Missense_Mutation p.L1405F 0.12 tolerated(0.48) possibly_damaging(0.842) TCGA-85-A4CN-01 2 31589747 31589747 T C XDH Missense_Mutation p.M771V 0.22 deleterious(0.02) benign(0.102) TCGA-85-A4CN-01 2 54131271 54131271 G T PSME4 Missense_Mutation p.T989K 0.24 tolerated(0.17) benign(0.002) TCGA-85-A4CN-01 2 55253107 55253107 C T RTN4 Missense_Mutation p.E710K 0.25 deleterious(0) possibly_damaging(0.735) TCGA-85-A4CN-01 2 71801361 71801361 G T DYSF Nonsense_Mutation p.E1088* 0.24 TCGA-85-A4CN-01 2 74432911 74432911 G T MTHFD2 Missense_Mutation p.V61L 0.24 tolerated(0.12) possibly_damaging(0.734) TCGA-85-A4CN-01 2 79313493 79313493 C A REG1B Missense_Mutation p.K107N 0.32 tolerated(0.38) possibly_damaging(0.605) TCGA-85-A4CN-01 2 90108983 90108983 G T IGKV6D-41 Missense_Mutation p.S83I 0.16 deleterious(0.01) benign(0.238) TCGA-85-A4CN-01 3 10028373 10028373 G C EMC3 5'UTR 0.37 TCGA-85-A4CN-01 3 100963518 100963518 C A IMPG2 Missense_Mutation p.V553L 0.44 tolerated(0.09) benign(0.003) TCGA-85-A4CN-01 3 111958819 111958819 C T SLC9C1 Silent p.S438S 0.37 TCGA-85-A4CN-01 3 14861790 14861790 G T FGD5 Silent p.A404A 0.45 TCGA-85-A4CN-01 3 164780248 164780248 T A SI Missense_Mutation p.I311L 0.11 deleterious(0) benign(0.06) TCGA-85-A4CN-01 3 167508350 167508350 G T SERPINI1 Silent p.V147V 0.66 TCGA-85-A4CN-01 3 183547229 183547229 C G PARL 3'UTR 0.42 TCGA-85-A4CN-01 3 25216033 25216033 C T AC133680.1 3'Flank 0.48 TCGA-85-A4CN-01 3 38802723 38802723 C A SCN10A Missense_Mutation p.M281I 0.28 tolerated(0.29) benign(0.065) TCGA-85-A4CN-01 3 38966954 38966954 G C SCN11A Missense_Mutation p.R222G 0.37 deleterious(0) probably_damaging(0.998) TCGA-85-A4CN-01 3 39307569 39307569 C A CX3CR1 Missense_Mutation p.Q176H 0.43 deleterious(0.03) benign(0.087) TCGA-85-A4CN-01 3 43732462 43732462 C T ABHD5 5'UTR 0.45 TCGA-85-A4CN-01 3 50413108 50413108 T C CACNA2D2 Missense_Mutation p.Y625C 0.42 deleterious(0) probably_damaging(1) TCGA-85-A4CN-01 4 128807433 128807433 G T PLK4 Missense_Mutation p.S303I 0.28 deleterious(0) benign(0.361) TCGA-85-A4CN-01 4 153691667 153691667 G A TIGD4 Nonsense_Mutation p.Q164* 0.31 TCGA-85-A4CN-01 5 128302279 128302279 C T SLC27A6 Missense_Mutation p.A150V 0.36 deleterious(0.01) benign(0.063) TCGA-85-A4CN-01 5 140222595 140222595 G A PCDHA8 Silent p.P563P 0.36 TCGA-85-A4CN-01 5 146080636 146080636 C A PPP2R2B Missense_Mutation p.R50L 0.34 deleterious(0) probably_damaging(0.974) TCGA-85-A4CN-01 5 154396210 154396210 G A KIF4B Missense_Mutation p.V931M 0.41 tolerated(0.06) possibly_damaging(0.625) TCGA-85-A4CN-01 5 168123345 168123345 C T SLIT3 Missense_Mutation p.V1012M 0.41 deleterious(0.01) benign(0.315) TCGA-85-A4CN-01 5 172659689 172659689 G A NKX2-5 Silent p.A286A 0.40 TCGA-85-A4CN-01 5 175111439 175111439 T A HRH2 Intron 0.36 TCGA-85-A4CN-01 5 177681992 177681992 T G COL23A1 Silent p.T306T 0.28 TCGA-85-A4CN-01 5 41010076 41010076 G A MROH2B Missense_Mutation p.H1081Y 0.09 tolerated(0.08) probably_damaging(0.984) TCGA-85-A4CN-01 5 41160409 41160409 G C C6 Missense_Mutation p.L507V 0.46 deleterious(0) probably_damaging(0.986) TCGA-85-A4CN-01 5 44305235 44305235 G T FGF10 Silent p.T163T 0.17 TCGA-85-A4CN-01 5 80171603 80171603 G T MSH3 Silent p.T1112T 0.29 TCGA-85-A4CN-01 5 90083976 90083976 A G GPR98 Missense_Mutation p.Y4581C 0.37 benign(0.237) TCGA-85-A4CN-01 5 98223900 98223900 T C CHD1 Silent p.L796L 0.41 TCGA-85-A4CN-01 6 107391251 107391251 G A BEND3 Missense_Mutation p.R382W 0.15 tolerated(0.05) possibly_damaging(0.855) TCGA-85-A4CN-01 6 116892655 116892655 C A RWDD1 5'UTR 0.26 TCGA-85-A4CN-01 6 132636802 132636802 C A MOXD1 Missense_Mutation p.G494W 0.05 deleterious(0) probably_damaging(1) TCGA-85-A4CN-01 6 13365367 13365367 C G GFOD1 Missense_Mutation p.V261L 0.55 deleterious(0.03) benign(0.001) TCGA-85-A4CN-01 6 146276451 146276451 C G SHPRH Missense_Mutation p.S3T 0.23 tolerated_low_confidence(0.05) benign(0.019) TCGA-85-A4CN-01 6 31605359 31605359 G - PRRC2A Frame_Shift_Del p.R2157Pfs*56 0.40 TCGA-85-A4CN-01 6 44272832 44272832 C T AARS2 Missense_Mutation p.S513N 0.08 deleterious(0) benign(0.428) TCGA-85-A4CN-01 6 49412395 49412395 C T MUT Missense_Mutation p.D545N 0.12 tolerated_low_confidence(0.18) benign(0.001) TCGA-85-A4CN-01 6 54254663 54254663 C T TINAG Silent p.S457S 0.24 TCGA-85-A4CN-01 6 56044793 56044793 G C COL21A1 Missense_Mutation p.Q75E 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-85-A4CN-01 6 75893370 75893370 T A COL12A1 Splice_Site p.X430_splice 0.18 TCGA-85-A4CN-01 6 79697927 79697927 T A PHIP Missense_Mutation p.D820V 0.28 tolerated(0.08) benign(0.06) TCGA-85-A4CN-01 7 108212304 108212304 C T DNAJB9 Missense_Mutation p.A45V 0.04 deleterious(0) probably_damaging(1) TCGA-85-A4CN-01 7 113558542 113558542 A G PPP1R3A Silent p.Y170Y 0.35 TCGA-85-A4CN-01 7 117351538 117351538 T C CTTNBP2 3'UTR 0.22 TCGA-85-A4CN-01 7 121942964 121942964 G T FEZF1 Missense_Mutation p.Q320K 0.31 deleterious(0.02) benign(0.163) TCGA-85-A4CN-01 7 126746554 126746554 C T GRM8 Silent p.E241E 0.20 TCGA-85-A4CN-01 7 138738220 138738220 G T ZC3HAV1 Missense_Mutation p.T809N 0.21 tolerated(0.11) probably_damaging(0.975) TCGA-85-A4CN-01 7 142001025 142001025 C G TRBV2 Missense_Mutation p.I6M 0.43 TCGA-85-A4CN-01 7 147964199 147964199 C G CNTNAP2 Silent p.L1152L 0.24 TCGA-85-A4CN-01 7 22767230 22767230 G T IL6 Missense_Mutation p.G63C 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-85-A4CN-01 7 31682737 31682737 G C CCDC129 Missense_Mutation p.G611R 0.23 tolerated(0.21) benign(0.379) TCGA-85-A4CN-01 7 50070851 50070851 G A ZPBP Silent p.P181P 0.26 TCGA-85-A4CN-01 7 74114964 74114965 - GTA GTF2I In_Frame_Ins 0.31 TCGA-85-A4CN-01 7 87196149 87196149 C T ABCB1 Missense_Mutation p.G161D 0.31 deleterious(0) probably_damaging(0.991) TCGA-85-A4CN-01 7 93055841 93055841 C A CALCR Missense_Mutation p.G452W 0.40 deleterious(0) probably_damaging(0.922) TCGA-85-A4CN-01 7 99017444 99017444 G A ATP5J2-PTCD1 3'UTR 0.22 TCGA-85-A4CN-01 7 99247788 99247788 A T CYP3A5 Missense_Mutation p.C441S 0.27 deleterious(0) probably_damaging(0.999) TCGA-85-A4CN-01 8 103231057 103231057 G T RRM2B Silent p.L223L 0.21 TCGA-85-A4CN-01 8 104225274 104225274 C T BAALC Silent p.G96G 0.09 TCGA-85-A4CN-01 8 105361074 105361074 G T DCSTAMP Missense_Mutation p.L98F 0.29 deleterious(0) probably_damaging(0.999) TCGA-85-A4CN-01 8 113702127 113702127 G T CSMD3 Missense_Mutation p.Q709K 0.28 deleterious(0.04) probably_damaging(0.998) TCGA-85-A4CN-01 8 12285195 12285195 T A FAM86B2 Missense_Mutation p.E288V 0.55 deleterious(0) possibly_damaging(0.68) TCGA-85-A4CN-01 8 131792657 131792657 G A ADCY8 Silent p.T1245T 0.19 TCGA-85-A4CN-01 8 133141850 133141850 A C KCNQ3 Missense_Mutation p.C760G 0.57 tolerated(0.34) benign(0) TCGA-85-A4CN-01 8 49647833 49647833 C T EFCAB1 5'Flank 0.62 TCGA-85-A4CN-01 8 74529596 74529596 A G STAU2 Silent p.A167A 0.19 TCGA-85-A4CN-01 9 100194330 100194330 C A TDRD7 Missense_Mutation p.Q125K 0.17 tolerated(0.09) possibly_damaging(0.796) TCGA-85-A4CN-01 9 1055772 1055772 T C DMRT2 Intron 0.42 TCGA-85-A4CN-01 9 105768036 105768036 G T CYLC2 3'UTR 0.25 TCGA-85-A4CN-01 9 130570887 130570887 G T FPGS Silent p.P291P 0.33 TCGA-85-A4CN-01 9 135273553 135273553 C T TTF1 Silent p.R584R 0.16 TCGA-85-A4CN-01 9 15225971 15225971 A G TTC39B Silent p.F105F 0.08 TCGA-85-A4CN-01 9 27197587 27197587 C A TEK Silent p.T633T 0.42 TCGA-85-A4CN-01 9 74360196 74360196 T C TMEM2 Missense_Mutation p.T258A 0.13 tolerated(0.58) benign(0) TCGA-85-A4CN-01 9 79985390 79985390 A G VPS13A Missense_Mutation p.M2935V 0.22 deleterious(0.01) benign(0.009) TCGA-85-A4CN-01 9 95784659 95784659 G A FGD3 Silent p.S515S 0.15 TCGA-85-A4CN-01 X 104464198 104464198 G T TEX13A Silent p.P226P 0.19 TCGA-85-A4CN-01 X 106046171 106046171 C G TBC1D8B Missense_Mutation p.R30G 0.07 deleterious(0.01) probably_damaging(0.989) TCGA-85-A4CN-01 X 107224483 107224483 C A TEX13B Missense_Mutation p.A256S 0.12 tolerated(0.18) benign(0.006) TCGA-85-A4CN-01 X 107393412 107393412 C T ATG4A Missense_Mutation p.T282I 0.07 deleterious(0) probably_damaging(0.932) TCGA-85-A4CN-01 X 118370495 118370495 A T PGRMC1 Missense_Mutation p.S57C 0.26 deleterious(0.05) benign(0.198) TCGA-85-A4CN-01 X 118694306 118694306 G T CXorf56 Missense_Mutation p.S56Y 0.10 deleterious(0) possibly_damaging(0.506) TCGA-85-A4CN-01 X 122766735 122766735 G T THOC2 Missense_Mutation p.L765I 0.10 deleterious(0.01) possibly_damaging(0.766) TCGA-85-A4CN-01 X 12736696 12736696 G A FRMPD4 Missense_Mutation p.A1251T 0.33 tolerated_low_confidence(0.17) benign(0.002) TCGA-85-A4CN-01 X 131188658 131188658 G A MST4 Splice_Site p.X15_splice 0.34 TCGA-85-A4CN-01 X 131205096 131205096 G T MST4 Splice_Site p.X262_splice 0.08 TCGA-85-A4CN-01 X 133675460 133675460 G T MIR542 RNA 0.20 TCGA-85-A4CN-01 X 135431042 135431042 T A GPR112 Missense_Mutation p.L1726Q 0.14 tolerated(0.09) benign(0.003) TCGA-85-A4CN-01 X 140985038 140985038 C A MAGEC3 Missense_Mutation p.F498L 0.25 tolerated(0.48) benign(0.262) TCGA-85-A4CN-01 X 141291192 141291192 G T MAGEC2 Silent p.G194G 0.10 TCGA-85-A4CN-01 X 144909507 144909507 T A TMEM257 Nonsense_Mutation p.Y104* 0.12 TCGA-85-A4CN-01 X 146280596 146280596 T A MIR513B RNA 0.19 TCGA-85-A4CN-01 X 149638287 149638287 C G MAMLD1 Missense_Mutation p.P123A 0.19 tolerated(0.1) benign(0.359) TCGA-85-A4CN-01 X 151560754 151560754 A T GABRA3 Intron 0.17 TCGA-85-A4CN-01 X 153053357 153053357 A C IDH3G Missense_Mutation p.V154G 0.12 deleterious(0) probably_damaging(0.999) TCGA-85-A4CN-01 X 153128954 153128954 C A L1CAM Missense_Mutation p.D1170Y 0.09 deleterious(0) probably_damaging(0.995) TCGA-85-A4CN-01 X 153880834 153880834 G T CTAG2 Missense_Mutation p.A114E 0.11 tolerated_low_confidence(0.11) possibly_damaging(0.693) TCGA-85-A4CN-01 X 18845513 18845513 G T PPEF1 Nonsense_Mutation p.G624* 0.06 TCGA-85-A4CN-01 X 18845514 18845514 G T PPEF1 Missense_Mutation p.G624V 0.06 deleterious(0) probably_damaging(0.998) TCGA-85-A4CN-01 X 31139961 31139961 C A DMD 3'UTR 0.10 TCGA-85-A4CN-01 X 3241634 3241634 C T MXRA5 Missense_Mutation p.D698N 0.29 deleterious(0) probably_damaging(0.946) TCGA-85-A4CN-01 X 39931859 39931859 A T BCOR Missense_Mutation p.F914I 0.09 deleterious(0) probably_damaging(0.992) TCGA-85-A4CN-01 X 47446150 47446150 T C TIMP1 3'UTR 0.11 TCGA-85-A4CN-01 X 48754054 48754054 G A TIMM17B Silent p.R38R 0.06 TCGA-85-A4CN-01 X 50659190 50659190 G T BMP15 Missense_Mutation p.E254D 0.14 tolerated(0.14) benign(0.269) TCGA-85-A4CN-01 X 50659191 50659191 G T BMP15 Nonsense_Mutation p.E255* 0.14 TCGA-85-A4CN-01 X 64959048 64959048 C A MSN Missense_Mutation p.H521N 0.25 deleterious(0.04) benign(0.008) TCGA-85-A4CN-01 X 69670589 69670589 G A DLG3 Missense_Mutation p.S314N 0.09 tolerated(0.35) benign(0.027) TCGA-85-A4CN-01 X 76872151 76872151 T C ATRX Silent p.E1832E 0.13 TCGA-85-A4CN-01 X 91090454 91090454 G T PCDH11X 5'UTR 0.32 TCGA-85-A4JB-01 10 101552023 101552023 C T ABCC2 Silent p.A80A 0.32 TCGA-85-A4JB-01 10 112362305 112362305 G T SMC3 Missense_Mutation p.G1060V 0.30 tolerated(0.3) benign(0.18) TCGA-85-A4JB-01 10 118969223 118969223 C G KCNK18 Missense_Mutation p.P190A 0.37 tolerated(0.17) benign(0.003) TCGA-85-A4JB-01 10 121587269 121587269 C G INPP5F Missense_Mutation p.Q1126E 0.14 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-85-A4JB-01 10 134004249 134004249 A G DPYSL4 Splice_Site p.X14_splice 0.33 TCGA-85-A4JB-01 10 135084237 135084237 C A ADAM8 Intron 0.25 TCGA-85-A4JB-01 10 18242340 18242340 C A SLC39A12 Missense_Mutation p.D45E 0.22 tolerated(1) benign(0) TCGA-85-A4JB-01 10 30318240 30318240 G A KIAA1462 Silent p.G279G 0.28 TCGA-85-A4JB-01 10 35626082 35626082 G C CCNY Missense_Mutation p.R34P 0.26 tolerated(0.19) possibly_damaging(0.702) TCGA-85-A4JB-01 10 38344740 38344740 G T ZNF33A Missense_Mutation p.S563I 0.22 tolerated(0.05) probably_damaging(0.966) TCGA-85-A4JB-01 10 43610117 43610117 C - RET Frame_Shift_Del p.G691Vfs*40 0.16 TCGA-85-A4JB-01 10 43697354 43697354 G A RASGEF1A Silent p.L121L 0.15 TCGA-85-A4JB-01 10 48438668 48438668 G - GDF10 Frame_Shift_Del p.Q15Sfs*105 0.27 TCGA-85-A4JB-01 10 52005106 52005106 G T ASAH2 Missense_Mutation p.S79Y 0.13 deleterious_low_confidence(0.04) benign(0.11) TCGA-85-A4JB-01 10 5227117 5227117 A C AKR1CL1 5'Flank 0.11 TCGA-85-A4JB-01 10 55582795 55582795 C A PCDH15 Missense_Mutation p.R1566M 0.28 tolerated_low_confidence(0.06) benign(0.019) TCGA-85-A4JB-01 10 73521470 73521470 G A C10orf54 Silent p.T132T 0.37 TCGA-85-A4JB-01 10 98138802 98138802 C G TLL2 Missense_Mutation p.V748L 0.06 tolerated(0.21) benign(0.014) TCGA-85-A4JB-01 11 105481649 105481649 A G GRIA4 5'UTR 0.21 TCGA-85-A4JB-01 11 110494930 110494930 G C ARHGAP20 Silent p.S153S 0.29 TCGA-85-A4JB-01 11 113701659 113701659 G A USP28 Silent p.P280P 0.19 TCGA-85-A4JB-01 11 119183121 119183121 C T MCAM Silent p.E293E 0.25 TCGA-85-A4JB-01 11 121030855 121030855 A G TECTA Silent p.T1567T 0.24 TCGA-85-A4JB-01 11 123901113 123901113 G T OR10G8 Missense_Mutation p.G262C 0.31 deleterious(0.04) probably_damaging(0.998) TCGA-85-A4JB-01 11 124180403 124180403 C T OR8D1 Missense_Mutation p.G87E 0.21 tolerated(0.09) benign(0.01) TCGA-85-A4JB-01 11 124805871 124805871 G T HEPACAM Missense_Mutation p.A11D 0.17 tolerated(0.1) benign(0.016) TCGA-85-A4JB-01 11 125359290 125359290 C A FEZ1 Intron 0.26 TCGA-85-A4JB-01 11 129747267 129747267 C A NFRKB Missense_Mutation p.V534L 0.04 deleterious(0.04) unknown(0) TCGA-85-A4JB-01 11 133790703 133790703 T A IGSF9B Missense_Mutation p.S973C 0.15 deleterious_low_confidence(0.02) possibly_damaging(0.78) TCGA-85-A4JB-01 11 133938987 133938987 G T JAM3 Silent p.L3L 0.14 TCGA-85-A4JB-01 11 14793633 14793633 A G PDE3B Intron 0.36 TCGA-85-A4JB-01 11 27384639 27384639 C A CCDC34 Missense_Mutation p.V35F 0.19 tolerated(0.12) benign(0.001) TCGA-85-A4JB-01 11 32635765 32635765 A C CCDC73 Missense_Mutation p.V700G 0.20 tolerated(0.41) benign(0.009) TCGA-85-A4JB-01 11 32697480 32697480 C A CCDC73 Missense_Mutation p.G173C 0.12 tolerated(0.17) benign(0.149) TCGA-85-A4JB-01 11 36595338 36595338 G A RAG1 Missense_Mutation p.D162N 0.17 deleterious_low_confidence(0) benign(0.001) TCGA-85-A4JB-01 11 43427379 43427379 G T TTC17 Missense_Mutation p.A547S 0.14 tolerated(0.75) benign(0.034) TCGA-85-A4JB-01 11 48328256 48328256 C G OR4S1 Missense_Mutation p.T161R 0.24 deleterious(0.01) possibly_damaging(0.83) TCGA-85-A4JB-01 11 5372847 5372847 T G OR51B6 Missense_Mutation p.L37R 0.07 deleterious(0) possibly_damaging(0.841) TCGA-85-A4JB-01 11 55321919 55321919 G T OR4C15 Missense_Mutation p.G46V 0.22 tolerated_low_confidence(0.31) benign(0.001) TCGA-85-A4JB-01 11 55340041 55340041 C A OR4C16 Silent p.A146A 0.28 TCGA-85-A4JB-01 11 55419183 55419183 G - OR4S2 Frame_Shift_Del p.V269Wfs*12 0.24 TCGA-85-A4JB-01 11 55587506 55587506 C A OR5D18 Missense_Mutation p.T134K 0.23 deleterious(0.01) benign(0.04) TCGA-85-A4JB-01 11 55735501 55735501 C A OR10AG1 Missense_Mutation p.V147L 0.23 tolerated(0.28) benign(0.007) TCGA-85-A4JB-01 11 55861264 55861264 T G OR8I2 Missense_Mutation p.W161G 0.22 tolerated(0.36) benign(0.06) TCGA-85-A4JB-01 11 55890037 55890037 C T OR8H3 Silent p.F63F 0.18 TCGA-85-A4JB-01 11 57137437 57137437 C T P2RX3 Silent p.S387S 0.13 TCGA-85-A4JB-01 11 57995644 57995644 G T OR10Q1 Missense_Mutation p.S235Y 0.28 deleterious(0) probably_damaging(1) TCGA-85-A4JB-01 11 58207394 58207394 G T OR5B12 Silent p.P77P 0.24 TCGA-85-A4JB-01 11 5862404 5862404 A T OR52E6 Missense_Mutation p.C242S 0.16 deleterious(0.01) benign(0.153) TCGA-85-A4JB-01 11 60665363 60665363 G A PRPF19 Nonsense_Mutation p.Q458* 0.26 TCGA-85-A4JB-01 11 61254502 61254502 C T PPP1R32 Missense_Mutation p.A306V 0.27 tolerated(0.23) benign(0.145) TCGA-85-A4JB-01 11 6240203 6240203 G C FAM160A2 Silent p.L423L 0.14 TCGA-85-A4JB-01 11 6240209 6240209 C A FAM160A2 Silent p.L421L 0.13 TCGA-85-A4JB-01 11 62445978 62445978 C A UBXN1 Missense_Mutation p.G70V 0.07 tolerated(0.15) benign(0.007) TCGA-85-A4JB-01 11 64374744 64374744 A C NRXN2 Missense_Mutation p.V1688G 0.22 deleterious(0) benign(0.246) TCGA-85-A4JB-01 11 64435051 64435051 G T NRXN2 Missense_Mutation p.A490D 0.29 tolerated(0.43) benign(0) TCGA-85-A4JB-01 11 644638 644638 T G DEAF1 Missense_Mutation p.Q537P 0.25 deleterious(0.01) benign(0.015) TCGA-85-A4JB-01 11 64815779 64815779 A G NAALADL1 Missense_Mutation p.F426S 0.28 deleterious(0.01) possibly_damaging(0.616) TCGA-85-A4JB-01 11 64989958 64989958 C T SLC22A20 RNA 0.13 TCGA-85-A4JB-01 11 6500438 6500438 C T ARFIP2 Missense_Mutation p.E83K 0.30 tolerated(0.26) possibly_damaging(0.507) TCGA-85-A4JB-01 11 65650257 65650257 G A CTSW Silent p.L209L 0.20 TCGA-85-A4JB-01 11 67395859 67395859 C A NUDT8 Missense_Mutation p.V114L 0.20 deleterious(0.01) possibly_damaging(0.746) TCGA-85-A4JB-01 11 67402721 67402721 A T TBX10 Silent p.A7A 0.24 TCGA-85-A4JB-01 11 6807177 6807177 G T OR2AG1 Missense_Mutation p.R303S 0.08 deleterious(0.01) possibly_damaging(0.78) TCGA-85-A4JB-01 11 72397088 72397088 G C ARAP1 Missense_Mutation p.S1445C 0.16 deleterious(0) possibly_damaging(0.873) TCGA-85-A4JB-01 11 74914348 74914348 T A SLCO2B1 Intron 0.25 TCGA-85-A4JB-01 11 76885898 76885898 T A MYO7A Missense_Mutation p.F678I 0.16 deleterious(0) probably_damaging(0.97) TCGA-85-A4JB-01 11 7721865 7721865 C A OVCH2 Missense_Mutation p.W293C 0.15 deleterious(0) probably_damaging(1) TCGA-85-A4JB-01 11 92616314 92616314 C A FAT3 Missense_Mutation p.P4231H 0.25 probably_damaging(0.96) TCGA-85-A4JB-01 12 104155174 104155174 C A STAB2 Missense_Mutation p.P2449T 0.14 deleterious(0) probably_damaging(1) TCGA-85-A4JB-01 12 112645805 112645805 C A HECTD4 Splice_Site p.X2523_splice 0.14 TCGA-85-A4JB-01 12 126128754 126128754 C A TMEM132B Missense_Mutation p.L519M 0.26 deleterious(0) probably_damaging(0.986) TCGA-85-A4JB-01 12 132611288 132611288 T A RP13-977J11.5 RNA 0.47 TCGA-85-A4JB-01 12 133423678 133423678 C A CHFR Missense_Mutation p.M574I 0.28 tolerated(0.1) benign(0.002) TCGA-85-A4JB-01 12 1749029 1749029 C T WNT5B Missense_Mutation p.R170C 0.15 deleterious(0) probably_damaging(0.973) TCGA-85-A4JB-01 12 22063869 22063869 T A ABCC9 Missense_Mutation p.Y352F 0.36 tolerated(0.47) benign(0.052) TCGA-85-A4JB-01 12 29464056 29464056 A G FAR2 Silent p.V288V 0.39 TCGA-85-A4JB-01 12 40687409 40687409 C G LRRK2 Missense_Mutation p.R918G 0.10 tolerated(0.06) benign(0.113) TCGA-85-A4JB-01 12 46633514 46633514 T C SLC38A1 Missense_Mutation p.I24V 0.17 tolerated(0.68) benign(0) TCGA-85-A4JB-01 12 49460759 49460759 C A RHEBL1 Missense_Mutation p.A62S 0.12 deleterious(0) probably_damaging(0.996) TCGA-85-A4JB-01 12 51722228 51722228 A G CELA1 3'UTR 0.38 TCGA-85-A4JB-01 12 52379031 52379031 A T ACVR1B Missense_Mutation p.K386N 0.27 tolerated(0.07) probably_damaging(0.948) TCGA-85-A4JB-01 12 52964573 52964573 G A KRT74 Silent p.I296I 0.18 TCGA-85-A4JB-01 12 53042806 53042806 T C KRT2 Silent p.K314K 0.18 TCGA-85-A4JB-01 12 53579749 53579749 G A ZNF740 Silent p.V87V 0.27 TCGA-85-A4JB-01 12 54891634 54891634 C T NCKAP1L Missense_Mutation p.R21C 0.18 deleterious(0) probably_damaging(0.999) TCGA-85-A4JB-01 12 55725993 55725993 T A OR6C3 Missense_Mutation p.V170D 0.13 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-85-A4JB-01 12 56088448 56088448 G A ITGA7 Missense_Mutation p.A747V 0.11 deleterious(0) benign(0.159) TCGA-85-A4JB-01 12 57605787 57605787 C A LRP1 Silent p.R4446R 0.11 TCGA-85-A4JB-01 12 57605788 57605788 G A LRP1 Missense_Mutation p.R4446Q 0.13 benign(0.003) TCGA-85-A4JB-01 12 70206626 70206626 A G RAB3IP Missense_Mutation p.Y416C 0.22 deleterious(0.04) benign(0.078) TCGA-85-A4JB-01 12 72094963 72094963 A T TMEM19 3'UTR 0.33 TCGA-85-A4JB-01 12 72094964 72094964 G A TMEM19 3'UTR 0.33 TCGA-85-A4JB-01 12 72893323 72893323 C A TRHDE Missense_Mutation p.L499M 0.24 deleterious(0.04) probably_damaging(0.997) TCGA-85-A4JB-01 12 72893325 72893325 G A TRHDE Silent p.L499L 0.23 TCGA-85-A4JB-01 12 77436959 77436959 C G E2F7 Missense_Mutation p.D337H 0.21 deleterious(0) probably_damaging(1) TCGA-85-A4JB-01 12 78225453 78225453 A T NAV3 Missense_Mutation p.Q71L 0.18 tolerated_low_confidence(0.11) benign(0.046) TCGA-85-A4JB-01 12 78574809 78574809 A T NAV3 Silent p.T1870T 0.10 TCGA-85-A4JB-01 12 78598717 78598717 G T NAV3 Missense_Mutation p.M2257I 0.35 deleterious(0.01) benign(0.312) TCGA-85-A4JB-01 12 80632730 80632730 C A OTOGL Missense_Mutation p.P297Q 0.10 deleterious(0) probably_damaging(0.989) TCGA-85-A4JB-01 12 95604076 95604076 T A FGD6 Missense_Mutation p.Q328H 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-85-A4JB-01 12 98993551 98993551 A - SLC25A3 Intron 0.19 TCGA-85-A4JB-01 13 102029336 102029336 A G NALCN Silent p.I149I 0.15 TCGA-85-A4JB-01 13 103449167 103449167 T A KDELC1 Silent p.P125P 0.10 TCGA-85-A4JB-01 13 19753611 19753611 G T TUBA3C Silent p.P32P 0.19 TCGA-85-A4JB-01 13 19753612 19753612 G T TUBA3C Missense_Mutation p.P32H 0.20 deleterious_low_confidence(0.02) probably_damaging(0.979) TCGA-85-A4JB-01 13 25457343 25457343 C T CENPJ Missense_Mutation p.G1330D 0.25 deleterious(0) probably_damaging(0.998) TCGA-85-A4JB-01 13 25457344 25457344 C A CENPJ Missense_Mutation p.G1330C 0.24 deleterious(0) probably_damaging(0.999) TCGA-85-A4JB-01 13 25875987 25875987 G A NUPL1 Missense_Mutation p.G26S 0.18 tolerated(0.31) unknown(0) TCGA-85-A4JB-01 13 28539066 28539066 A G CDX2 Missense_Mutation p.Y210H 0.38 deleterious(0) possibly_damaging(0.855) TCGA-85-A4JB-01 13 46721077 46721077 T C LCP1 Silent p.P380P 0.34 TCGA-85-A4JB-01 13 49281232 49281232 C A CYSLTR2 Missense_Mutation p.F93L 0.22 tolerated(0.61) possibly_damaging(0.657) TCGA-85-A4JB-01 13 50489107 50489107 A G SPRYD7 3'UTR 0.25 TCGA-85-A4JB-01 13 52604101 52604101 A T UTP14C Silent p.T387T 0.25 TCGA-85-A4JB-01 13 53624194 53624194 G T OLFM4 Missense_Mutation p.W274L 0.23 deleterious(0) probably_damaging(1) TCGA-85-A4JB-01 13 98086748 98086748 G T RAP2A Silent p.V8V 0.25 TCGA-85-A4JB-01 14 101350984 101350984 C A RTL1 Missense_Mutation p.A48S 0.28 tolerated_low_confidence(0.16) benign(0.008) TCGA-85-A4JB-01 14 105609109 105609109 G T JAG2 Missense_Mutation p.H1214N 0.12 tolerated(0.85) benign(0.021) TCGA-85-A4JB-01 14 107131091 107131091 A T IGHV3-66 Missense_Mutation p.L97Q 0.23 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-85-A4JB-01 14 107283053 107283053 C T IGHV7-81 Silent p.V30V 0.14 TCGA-85-A4JB-01 14 20770062 20770062 A G TTC5 Silent p.D38D 0.25 TCGA-85-A4JB-01 14 21109390 21109390 C - OR6S1 Frame_Shift_Del p.G154Dfs*62 0.17 TCGA-85-A4JB-01 14 21498915 21498915 T C TPPP2 Splice_Site p.X58_splice 0.24 TCGA-85-A4JB-01 14 24617864 24617864 G C RNF31 Missense_Mutation p.R170T 0.17 deleterious(0.04) benign(0.064) TCGA-85-A4JB-01 14 47120623 47120623 G T RPL10L Missense_Mutation p.A106D 0.28 deleterious(0.02) benign(0.271) TCGA-85-A4JB-01 14 55636218 55636218 T A DLGAP5 Nonsense_Mutation p.K483* 0.32 TCGA-85-A4JB-01 14 57268985 57268985 T - OTX2 Frame_Shift_Del p.K121Rfs*9 0.30 TCGA-85-A4JB-01 14 59113688 59113689 - T DACT1 Frame_Shift_Ins p.W784Lfs*30 0.32 TCGA-85-A4JB-01 14 60938153 60938153 G C C14orf39 Missense_Mutation p.T179S 0.25 tolerated(0.54) benign(0.027) TCGA-85-A4JB-01 14 62462814 62462814 A T SYT16 Missense_Mutation p.E26V 0.19 deleterious_low_confidence(0) possibly_damaging(0.884) TCGA-85-A4JB-01 14 74531596 74531596 G A ALDH6A1 Missense_Mutation p.P478S 0.26 deleterious(0) probably_damaging(1) TCGA-85-A4JB-01 14 77275889 77275889 C A ANGEL1 Missense_Mutation p.Q54H 0.24 tolerated(0.24) benign(0.429) TCGA-85-A4JB-01 14 88651714 88651714 T A KCNK10 3'UTR 0.44 TCGA-85-A4JB-01 14 88658572 88658572 C T KCNK10 Silent p.V288V 0.18 TCGA-85-A4JB-01 14 90650471 90650471 T C KCNK13 Silent p.T117T 0.19 TCGA-85-A4JB-01 14 91372547 91372547 T C RPS6KA5 Silent p.R301R 0.25 TCGA-85-A4JB-01 14 96777942 96777942 C T ATG2B Silent p.V1309V 0.30 TCGA-85-A4JB-01 15 22962270 22962270 G C CYFIP1 Missense_Mutation p.D700H 0.11 deleterious(0) probably_damaging(1) TCGA-85-A4JB-01 15 26792986 26792986 G T GABRB3 Missense_Mutation p.T459N 0.27 deleterious(0.01) possibly_damaging(0.493) TCGA-85-A4JB-01 15 27182467 27182467 C T GABRA5 Missense_Mutation p.T239I 0.26 deleterious(0.02) possibly_damaging(0.696) TCGA-85-A4JB-01 15 28277283 28277283 G T OCA2 Missense_Mutation p.S85Y 0.32 tolerated_low_confidence(0.18) benign(0.021) TCGA-85-A4JB-01 15 28520097 28520097 C A HERC2 Silent p.A199A 0.31 TCGA-85-A4JB-01 15 31851306 31851306 T C OTUD7A Missense_Mutation p.N139S 0.11 tolerated(1) benign(0.003) TCGA-85-A4JB-01 15 32404015 32404015 T A CHRNA7 Missense_Mutation p.W118R 0.19 deleterious(0) probably_damaging(0.999) TCGA-85-A4JB-01 15 34049683 34049683 T C RYR3 Missense_Mutation p.L2864P 0.33 probably_damaging(0.997) TCGA-85-A4JB-01 15 35045311 35045311 C A GJD2 Missense_Mutation p.V112F 0.30 tolerated(0.62) benign(0.157) TCGA-85-A4JB-01 15 35202499 35202499 G T AQR Silent p.G500G 0.08 TCGA-85-A4JB-01 15 37100611 37100611 G T C15orf41 Missense_Mutation p.C268F 0.29 tolerated(0.1) benign(0.382) TCGA-85-A4JB-01 15 40018792 40018792 G A FSIP1 Nonsense_Mutation p.Q350* 0.24 TCGA-85-A4JB-01 15 51689672 51689672 A T GLDN Nonsense_Mutation p.K232* 0.35 TCGA-85-A4JB-01 15 54793030 54793030 C A UNC13C Intron 0.16 TCGA-85-A4JB-01 15 66794422 66794422 C T RPL4 Intron 0.24 TCGA-85-A4JB-01 15 68118561 68118561 C T SKOR1 Missense_Mutation p.P318L 0.10 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-85-A4JB-01 15 68643004 68643004 G T ITGA11 Silent p.A337A 0.27 TCGA-85-A4JB-01 15 83395079 83395079 C G AC105339.2 3'Flank 0.29 TCGA-85-A4JB-01 15 89744084 89744084 G T ABHD2 3'UTR 0.39 TCGA-85-A4JB-01 15 90348429 90348429 T C ANPEP Silent p.P259P 0.13 TCGA-85-A4JB-01 15 91832909 91832909 A C SV2B Silent p.R623R 0.11 TCGA-85-A4JB-01 16 15122754 15122754 C A PDXDC1 Silent p.V408V 0.11 TCGA-85-A4JB-01 16 21213568 21213568 C T ZP2 Missense_Mutation p.V382I 0.11 tolerated(0.21) possibly_damaging(0.776) TCGA-85-A4JB-01 16 24231458 24231458 G T PRKCB 3'UTR 0.30 TCGA-85-A4JB-01 16 28515113 28515113 G A IL27 Missense_Mutation p.A69V 0.21 deleterious(0.03) probably_damaging(0.996) TCGA-85-A4JB-01 16 28883212 28883212 C T SH2B1 Missense_Mutation p.P474L 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-85-A4JB-01 16 29096539 29096539 C G RRN3P2 Intron 0.07 TCGA-85-A4JB-01 16 29107503 29107503 A G RRN3P2 RNA 0.16 TCGA-85-A4JB-01 16 31142679 31142679 T C KAT8 3'UTR 0.24 TCGA-85-A4JB-01 16 31383751 31383751 T A ITGAX Missense_Mutation p.L738Q 0.22 deleterious(0) probably_damaging(1) TCGA-85-A4JB-01 16 3140475 3140475 A G ZSCAN10 Silent p.D265D 0.27 TCGA-85-A4JB-01 16 4393246 4393246 C A PAM16 Missense_Mutation p.G17V 0.13 deleterious(0.01) probably_damaging(0.989) TCGA-85-A4JB-01 16 4414313 4414313 C T CORO7 Silent p.A413A 0.35 TCGA-85-A4JB-01 16 57060503 57060503 C T NLRC5 Missense_Mutation p.R550W 0.14 deleterious(0) probably_damaging(0.998) TCGA-85-A4JB-01 16 624126 624126 C G PIGQ Missense_Mutation p.L18V 0.09 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-85-A4JB-01 16 67469643 67469643 C A HSD11B2 Silent p.T126T 0.27 TCGA-85-A4JB-01 16 67980398 67980398 C A SLC12A4 Missense_Mutation p.G796C 0.37 deleterious(0) probably_damaging(0.994) TCGA-85-A4JB-01 16 69973796 69973796 A T WWP2 Nonsense_Mutation p.K856* 0.28 TCGA-85-A4JB-01 16 76555047 76555047 G C CNTNAP4 Missense_Mutation p.W719C 0.28 deleterious(0) probably_damaging(1) TCGA-85-A4JB-01 16 8735040 8735040 A T METTL22 Silent p.T275T 0.36 TCGA-85-A4JB-01 17 10295240 10295240 G T MYH8 Missense_Mutation p.Q1875K 0.33 deleterious(0) probably_damaging(0.999) TCGA-85-A4JB-01 17 10545903 10545903 C T MYH3 Silent p.R573R 0.38 TCGA-85-A4JB-01 17 11550484 11550484 C A DNAH9 Missense_Mutation p.T689K 0.39 benign(0.092) TCGA-85-A4JB-01 17 11648139 11648139 C A DNAH9 Missense_Mutation p.A2046D 0.21 probably_damaging(1) TCGA-85-A4JB-01 17 11648140 11648140 C A DNAH9 Silent p.A2046A 0.21 TCGA-85-A4JB-01 17 12862198 12862198 T C ARHGAP44 Missense_Mutation p.F503L 0.19 tolerated(0.24) probably_damaging(0.935) TCGA-85-A4JB-01 17 12893448 12893448 A G ARHGAP44 Missense_Mutation p.K806R 0.25 tolerated_low_confidence(0.1) benign(0.272) TCGA-85-A4JB-01 17 15498192 15498192 G T RP11-385D13.1 Missense_Mutation p.H883N 0.37 deleterious_low_confidence(0.02) probably_damaging(0.969) TCGA-85-A4JB-01 17 2995974 2995974 G T OR1D2 Missense_Mutation p.S106Y 0.06 tolerated(1) possibly_damaging(0.563) TCGA-85-A4JB-01 17 38508212 38508212 T A RARA Missense_Mutation p.C174S 0.17 tolerated(0.88) benign(0.003) TCGA-85-A4JB-01 17 3989912 3989912 G C ZZEF1 Missense_Mutation p.L794V 0.10 deleterious(0) probably_damaging(0.998) TCGA-85-A4JB-01 17 41019674 41019674 G A AOC4P RNA 0.40 TCGA-85-A4JB-01 17 46847242 46847242 C A TTLL6 Missense_Mutation p.W753L 0.34 tolerated_low_confidence(1) benign(0) TCGA-85-A4JB-01 17 48618163 48618163 C T EPN3 Missense_Mutation p.P330L 0.14 tolerated(0.08) benign(0.002) TCGA-85-A4JB-01 17 4907894 4907894 C G KIF1C Missense_Mutation p.L325V 0.08 deleterious(0.04) possibly_damaging(0.837) TCGA-85-A4JB-01 17 4925877 4925877 G T KIF1C Missense_Mutation p.R834L 0.47 deleterious_low_confidence(0) possibly_damaging(0.726) TCGA-85-A4JB-01 17 62132118 62132118 A G ERN1 Silent p.A581A 0.17 TCGA-85-A4JB-01 17 65027248 65027248 G C CACNG4 3'UTR 0.15 TCGA-85-A4JB-01 17 6554839 6554839 C T MED31 Missense_Mutation p.A4T 0.29 tolerated(0.4) benign(0.016) TCGA-85-A4JB-01 17 7577141 7577141 C - TP53 Frame_Shift_Del p.G266Dfs*79 0.23 TCGA-85-A4JB-01 17 79095133 79095133 G T AATK Nonsense_Mutation p.S868* 0.20 TCGA-85-A4JB-01 17 79632428 79632428 C T OXLD1 Missense_Mutation p.E83K 0.10 tolerated(0.34) possibly_damaging(0.697) TCGA-85-A4JB-01 18 12254366 12254366 G T CIDEA 5'UTR 0.25 TCGA-85-A4JB-01 18 12724496 12724496 A G PSMG2 Splice_Site p.X194_splice 0.37 TCGA-85-A4JB-01 18 13059273 13059273 G T CEP192 Missense_Mutation p.V1484F 0.10 deleterious(0) probably_damaging(0.993) TCGA-85-A4JB-01 18 19995803 19995803 G A CTAGE1 Missense_Mutation p.P658S 0.23 tolerated(0.42) benign(0.044) TCGA-85-A4JB-01 18 22807050 22807050 G T ZNF521 Silent p.R278R 0.17 TCGA-85-A4JB-01 18 2892300 2892300 G A EMILIN2 Silent p.R725R 0.13 TCGA-85-A4JB-01 18 43252881 43252881 C T SLC14A2 Missense_Mutation p.P749L 0.25 deleterious(0.04) benign(0.302) TCGA-85-A4JB-01 18 43262503 43262503 C A SLC14A2 3'UTR 0.27 TCGA-85-A4JB-01 18 46812943 46812943 T A DYM Missense_Mutation p.K269N 0.25 tolerated(0.24) benign(0.038) TCGA-85-A4JB-01 18 47320781 47320781 C G ACAA2 Missense_Mutation p.W149S 0.19 tolerated(0.06) probably_damaging(0.992) TCGA-85-A4JB-01 18 47405314 47405314 C A MYO5B Splice_Site p.X1092_splice 0.41 TCGA-85-A4JB-01 18 55024162 55024162 T C ST8SIA3 Silent p.H107H 0.30 TCGA-85-A4JB-01 18 59780438 59780438 T A PIGN Missense_Mutation p.I455L 0.30 tolerated(0.22) benign(0.013) TCGA-85-A4JB-01 18 60036443 60036443 C G TNFRSF11A Missense_Mutation p.C431W 0.17 deleterious(0.02) possibly_damaging(0.711) TCGA-85-A4JB-01 18 65180148 65180148 C A DSEL Silent p.L576L 0.12 TCGA-85-A4JB-01 18 67857895 67857895 C A RTTN Missense_Mutation p.M356I 0.20 tolerated(0.21) benign(0.001) TCGA-85-A4JB-01 18 76757083 76757083 G C SALL3 Missense_Mutation p.G1222R 0.26 deleterious(0) probably_damaging(0.991) TCGA-85-A4JB-01 18 77221355 77221355 C T NFATC1 Silent p.L637L 0.23 TCGA-85-A4JB-01 19 10886546 10886546 G T DNM2 Missense_Mutation p.D185Y 0.34 deleterious(0) probably_damaging(1) TCGA-85-A4JB-01 19 10908172 10908172 T A DNM2 Missense_Mutation p.V438D 0.33 deleterious(0) possibly_damaging(0.88) TCGA-85-A4JB-01 19 11356294 11356294 C A DOCK6 Missense_Mutation p.R323L 0.60 deleterious(0) possibly_damaging(0.859) TCGA-85-A4JB-01 19 22155739 22155739 G A ZNF208 Silent p.G699G 0.27 TCGA-85-A4JB-01 19 2431553 2431553 T G LMNB2 Missense_Mutation p.H605P 0.13 tolerated(0.17) possibly_damaging(0.854) TCGA-85-A4JB-01 19 31048224 31048224 C A ZNF536 3'UTR 0.11 TCGA-85-A4JB-01 19 33991867 33991867 C G PEPD Missense_Mutation p.D124H 0.13 deleterious(0.02) possibly_damaging(0.533) TCGA-85-A4JB-01 19 3527020 3527020 G A FZR1 Missense_Mutation p.D144N 0.24 tolerated(0.33) benign(0.001) TCGA-85-A4JB-01 19 36357062 36357062 C A KIRREL2 Missense_Mutation p.P599T 0.31 deleterious(0) probably_damaging(0.996) TCGA-85-A4JB-01 19 37005138 37005138 T A ZNF260 Nonsense_Mutation p.K335* 0.11 TCGA-85-A4JB-01 19 39019290 39019290 G T RYR1 Silent p.L3663L 0.22 TCGA-85-A4JB-01 19 40362837 40362837 T C FCGBP Missense_Mutation p.Y5078C 0.26 probably_damaging(0.99) TCGA-85-A4JB-01 19 42856608 42856608 C G MEGF8 Missense_Mutation p.T1050R 0.40 deleterious(0) probably_damaging(0.98) TCGA-85-A4JB-01 19 42914598 42914598 T C LIPE Missense_Mutation p.Y427C 0.32 deleterious(0.02) possibly_damaging(0.617) TCGA-85-A4JB-01 19 43965976 43965976 C G LYPD3 Missense_Mutation p.V190L 0.28 deleterious(0.01) possibly_damaging(0.658) TCGA-85-A4JB-01 19 44636512 44636512 G T ZNF225 Missense_Mutation p.S582I 0.22 tolerated(0.09) benign(0.196) TCGA-85-A4JB-01 19 45848851 45848851 C G KLC3 Missense_Mutation p.L18V 0.33 deleterious(0.03) benign(0.115) TCGA-85-A4JB-01 19 47912793 47912793 C A MEIS3 Missense_Mutation p.W203C 0.14 deleterious(0.04) probably_damaging(0.935) TCGA-85-A4JB-01 19 48248865 48248865 G T GLTSCR2 Missense_Mutation p.D17Y 0.29 deleterious_low_confidence(0.02) benign(0.187) TCGA-85-A4JB-01 19 49898382 49898382 G T CCDC155 Missense_Mutation p.Q56H 0.19 tolerated(1) benign(0.002) TCGA-85-A4JB-01 19 49898383 49898383 G T CCDC155 Missense_Mutation p.V57L 0.19 tolerated(0.3) benign(0.03) TCGA-85-A4JB-01 19 50363617 50363617 C T PTOV1 3'UTR 0.40 TCGA-85-A4JB-01 19 50549819 50549819 T A ZNF473 Missense_Mutation p.C707S 0.26 deleterious(0) benign(0.154) TCGA-85-A4JB-01 19 50549820 50549820 G T ZNF473 Missense_Mutation p.C707F 0.25 deleterious(0) possibly_damaging(0.532) TCGA-85-A4JB-01 19 51172384 51172384 G A SHANK1 Missense_Mutation p.L945F 0.29 possibly_damaging(0.587) TCGA-85-A4JB-01 19 51828604 51828604 T C IGLON5 Silent p.P132P 0.29 TCGA-85-A4JB-01 19 54314227 54314227 T A NLRP12 Missense_Mutation p.K229M 0.30 deleterious(0) probably_damaging(1) TCGA-85-A4JB-01 19 54627187 54627187 A T PRPF31 Missense_Mutation p.E196V 0.31 deleterious(0.03) benign(0.368) TCGA-85-A4JB-01 19 54726884 54726884 G T LILRB3 5'Flank 0.10 TCGA-85-A4JB-01 19 55444939 55444939 C A NLRP7 Missense_Mutation p.L880F 0.26 deleterious(0) probably_damaging(0.936) TCGA-85-A4JB-01 19 56419275 56419275 G T NLRP13 Missense_Mutation p.A777D 0.21 deleterious(0.02) benign(0.033) TCGA-85-A4JB-01 19 56436366 56436366 G T NLRP13 Missense_Mutation p.Q119K 0.26 tolerated(1) benign(0.042) TCGA-85-A4JB-01 19 56573058 56573058 G A NLRP5 3'UTR 0.26 TCGA-85-A4JB-01 19 58570673 58570673 A T ZNF135 Missense_Mutation p.R22W 0.25 tolerated(0.19) benign(0.068) TCGA-85-A4JB-01 19 58948571 58948571 C A ZNF132 Missense_Mutation p.W25C 0.08 deleterious(0.05) benign(0.238) TCGA-85-A4JB-01 19 9015363 9015363 G T MUC16 Missense_Mutation p.T12742N 0.31 possibly_damaging(0.595) TCGA-85-A4JB-01 19 9066236 9066236 C A MUC16 Missense_Mutation p.E7070D 0.30 unknown(0) TCGA-85-A4JB-01 19 9077257 9077257 T C MUC16 Missense_Mutation p.T3397A 0.33 unknown(0) TCGA-85-A4JB-01 19 9090023 9090023 G T MUC16 Missense_Mutation p.P598T 0.28 unknown(0) TCGA-85-A4JB-01 19 9090024 9090024 G T MUC16 Silent p.G597G 0.27 TCGA-85-A4JB-01 1 10239963 10239963 G A UBE4B Silent p.L1286L 0.42 TCGA-85-A4JB-01 1 109793481 109793481 G C CELSR2 Silent p.T260T 0.31 TCGA-85-A4JB-01 1 110172949 110172949 A G AMPD2 Missense_Mutation p.N747S 0.29 tolerated(0.06) benign(0.164) TCGA-85-A4JB-01 1 145534979 145534979 G T ITGA10 Missense_Mutation p.D628Y 0.27 deleterious(0) probably_damaging(0.982) TCGA-85-A4JB-01 1 152759997 152759997 C T LCE1E Silent p.G74G 0.22 TCGA-85-A4JB-01 1 152957917 152957917 G T SPRR1A Nonsense_Mutation p.E71* 0.25 TCGA-85-A4JB-01 1 154574076 154574076 T C ADAR Missense_Mutation p.T348A 0.11 tolerated(0.55) benign(0.009) TCGA-85-A4JB-01 1 157485344 157485344 A T FCRL5 3'UTR 0.29 TCGA-85-A4JB-01 1 158590160 158590160 C G SPTA1 Missense_Mutation p.V2073L 0.10 tolerated(0.27) benign(0.015) TCGA-85-A4JB-01 1 160209846 160209846 G A DCAF8 Missense_Mutation p.R122W 0.13 deleterious(0.01) possibly_damaging(0.776) TCGA-85-A4JB-01 1 160249924 160249924 G T PEX19 Missense_Mutation p.T236N 0.28 tolerated(0.57) benign(0.029) TCGA-85-A4JB-01 1 16373139 16373139 C T CLCNKB Silent p.S113S 0.34 TCGA-85-A4JB-01 1 166896331 166896331 C G ILDR2 Missense_Mutation p.D323H 0.28 deleterious(0.04) probably_damaging(0.999) TCGA-85-A4JB-01 1 173457087 173457087 G A PRDX6 3'UTR 0.37 TCGA-85-A4JB-01 1 175066817 175066817 C G TNN Missense_Mutation p.T618R 0.25 deleterious(0) probably_damaging(0.949) TCGA-85-A4JB-01 1 175113525 175113525 G T TNN Missense_Mutation p.D1200Y 0.07 deleterious(0) probably_damaging(1) TCGA-85-A4JB-01 1 176992651 176992651 G T ASTN1 Missense_Mutation p.P443T 0.13 deleterious(0) probably_damaging(0.999) TCGA-85-A4JB-01 1 178433453 178433453 A T RASAL2 Missense_Mutation p.E1098V 0.33 deleterious(0) probably_damaging(0.998) TCGA-85-A4JB-01 1 183079722 183079722 G T LAMC1 Missense_Mutation p.K318N 0.27 tolerated(0.11) possibly_damaging(0.776) TCGA-85-A4JB-01 1 183539959 183539959 C A NCF2 Missense_Mutation p.V209L 0.11 deleterious(0.01) possibly_damaging(0.873) TCGA-85-A4JB-01 1 190067555 190067555 G A BRINP3 Missense_Mutation p.R632C 0.24 deleterious(0) probably_damaging(0.996) TCGA-85-A4JB-01 1 190067668 190067668 G C BRINP3 Missense_Mutation p.P594R 0.27 deleterious(0) possibly_damaging(0.809) TCGA-85-A4JB-01 1 200816385 200816385 G T CAMSAP2 Missense_Mutation p.R386M 0.15 deleterious(0.01) benign(0.223) TCGA-85-A4JB-01 1 207791522 207791522 G T CR1 Silent p.L2332L 0.17 TCGA-85-A4JB-01 1 228333221 228333221 G T GUK1 Missense_Mutation p.G24V 0.17 deleterious(0.01) probably_damaging(0.925) TCGA-85-A4JB-01 1 228879534 228879534 T A RHOU 3'UTR 0.28 TCGA-85-A4JB-01 1 230810856 230810856 G T COG2 Missense_Mutation p.D338Y 0.24 deleterious(0) probably_damaging(0.941) TCGA-85-A4JB-01 1 231047289 231047289 C A TTC13 Missense_Mutation p.D746Y 0.13 deleterious(0) probably_damaging(0.967) TCGA-85-A4JB-01 1 232539194 232539194 C G SIPA1L2 Missense_Mutation p.G1647A 0.24 tolerated(0.09) possibly_damaging(0.896) TCGA-85-A4JB-01 1 235993573 235993573 C A LYST Missense_Mutation p.G49C 0.09 deleterious_low_confidence(0) probably_damaging(1) TCGA-85-A4JB-01 1 238046134 238046134 A G ZP4 Missense_Mutation p.F468S 0.12 tolerated(1) benign(0) TCGA-85-A4JB-01 1 247835544 247835544 C A OR13G1 Missense_Mutation p.R267I 0.33 tolerated(0.07) possibly_damaging(0.776) TCGA-85-A4JB-01 1 248004803 248004803 G A OR11L1 Silent p.Y132Y 0.11 TCGA-85-A4JB-01 1 248059733 248059733 C - OR2W3 Frame_Shift_Del p.L284Sfs*14 0.12 TCGA-85-A4JB-01 1 248309301 248309301 G T OR2M5 Missense_Mutation p.M284I 0.12 tolerated(0.06) benign(0.007) TCGA-85-A4JB-01 1 248737725 248737725 G T OR2T34 Missense_Mutation p.L112M 0.16 tolerated(0.09) probably_damaging(0.933) TCGA-85-A4JB-01 1 27432393 27432393 A G SLC9A1 Missense_Mutation p.F490L 0.25 deleterious(0) possibly_damaging(0.597) TCGA-85-A4JB-01 1 31230591 31230591 A G LAPTM5 Translation_Start_Site p.M1? 0.35 deleterious_low_confidence(0) possibly_damaging(0.786) TCGA-85-A4JB-01 1 41486213 41486213 G T SLFNL1 Silent p.L40L 0.11 TCGA-85-A4JB-01 1 50661258 50661258 C T ELAVL4 Silent p.I195I 0.35 TCGA-85-A4JB-01 1 6324711 6324711 C - ACOT7 Frame_Shift_Del p.R364Gfs*5 0.29 TCGA-85-A4JB-01 1 65120403 65120403 G T CACHD1 Missense_Mutation p.V516L 0.42 tolerated(0.68) benign(0.001) TCGA-85-A4JB-01 1 67861577 67861577 T C IL12RB2 Silent p.D798D 0.13 TCGA-85-A4JB-01 1 71512825 71512825 A G PTGER3 Missense_Mutation p.F146L 0.53 tolerated(0.11) benign(0.116) TCGA-85-A4JB-01 1 75609530 75609530 G C LHX8 Missense_Mutation p.G204A 0.37 deleterious(0.02) benign(0.182) TCGA-85-A4JB-01 1 76877733 76877733 A T ST6GALNAC3 Missense_Mutation p.N85I 0.47 possibly_damaging(0.88) TCGA-85-A4JB-01 1 92948491 92948491 T A GFI1 Missense_Mutation p.E76D 0.45 tolerated_low_confidence(0.1) benign(0.015) TCGA-85-A4JB-01 1 95448683 95448683 C T ALG14 Silent p.P200P 0.14 TCGA-85-A4JB-01 20 16347975 16347975 A C KIF16B Missense_Mutation p.L1332R 0.39 tolerated_low_confidence(0.2) benign(0.017) TCGA-85-A4JB-01 20 20257890 20257890 C A C20orf26 Missense_Mutation p.R862S 0.10 tolerated(0.13) benign(0.107) TCGA-85-A4JB-01 20 21336796 21336796 A G XRN2 Missense_Mutation p.Y700C 0.41 deleterious(0) probably_damaging(0.968) TCGA-85-A4JB-01 20 23966798 23966798 G C GGTLC1 Silent p.L73L 0.11 TCGA-85-A4JB-01 20 2841219 2841219 G T VPS16 Missense_Mutation p.R165L 0.24 deleterious(0.01) probably_damaging(0.977) TCGA-85-A4JB-01 20 29960764 29960764 T A DEFB118 Missense_Mutation p.C55S 0.10 deleterious(0) possibly_damaging(0.849) TCGA-85-A4JB-01 20 37380817 37380817 C G ACTR5 Missense_Mutation p.Q217E 0.10 tolerated(0.18) possibly_damaging(0.604) TCGA-85-A4JB-01 20 42635357 42635357 C T TOX2 Silent p.A112A 0.09 TCGA-85-A4JB-01 20 47989570 47989570 C T KCNB1 Missense_Mutation p.V843M 0.44 tolerated_low_confidence(0.26) benign(0.001) TCGA-85-A4JB-01 20 55026917 55026917 G A CASS4 Missense_Mutation p.G229S 0.35 tolerated(0.09) benign(0.285) TCGA-85-A4JB-01 20 56140764 56140764 C A PCK1 Missense_Mutation p.D591E 0.44 tolerated(1) benign(0.001) TCGA-85-A4JB-01 20 57599146 57599146 T C TUBB1 Missense_Mutation p.Y222H 0.11 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-85-A4JB-01 20 61870551 61870551 G T BIRC7 Missense_Mutation p.R205S 0.08 tolerated(0.1) benign(0.118) TCGA-85-A4JB-01 20 61991030 61991030 C A CHRNA4 Missense_Mutation p.R33L 0.11 tolerated(0.27) benign(0.371) TCGA-85-A4JB-01 20 62172288 62172288 G T SRMS Silent p.A450A 0.36 TCGA-85-A4JB-01 20 7866378 7866378 G T HAO1 Missense_Mutation p.P316Q 0.19 deleterious(0) probably_damaging(1) TCGA-85-A4JB-01 21 19628834 19628834 G T CHODL Missense_Mutation p.V30L 0.21 tolerated(0.05) benign(0.17) TCGA-85-A4JB-01 21 22841086 22841086 C A NCAM2 Nonsense_Mutation p.Y626* 0.25 TCGA-85-A4JB-01 21 38504986 38504986 A T TTC3 Missense_Mutation p.S455C 0.08 tolerated(0.1) possibly_damaging(0.619) TCGA-85-A4JB-01 21 43994935 43994935 C T SLC37A1 Silent p.A477A 0.28 TCGA-85-A4JB-01 22 17450843 17450843 C A GAB4 Silent p.A309A 0.18 TCGA-85-A4JB-01 22 20939297 20939297 C A MED15 Silent p.P653P 0.36 TCGA-85-A4JB-01 22 23055583 23055583 C A IGLV3-21 Silent p.G82G 0.22 TCGA-85-A4JB-01 22 24210803 24210803 G T AP000350.10 Missense_Mutation p.G51C 0.22 deleterious(0) probably_damaging(1) TCGA-85-A4JB-01 22 28193474 28193474 C G MN1 Missense_Mutation p.D1020H 0.22 probably_damaging(0.995) TCGA-85-A4JB-01 22 29886141 29886141 C T NEFH Missense_Mutation p.P838S 0.44 deleterious_low_confidence(0.02) unknown(0) TCGA-85-A4JB-01 22 30888078 30888078 C - SEC14L4 Frame_Shift_Del p.T244Pfs*2 0.14 TCGA-85-A4JB-01 22 32275591 32275591 G A DEPDC5 Missense_Mutation p.V1287M 0.25 deleterious(0) probably_damaging(0.999) TCGA-85-A4JB-01 22 38120316 38120316 C T TRIOBP Missense_Mutation p.P585S 0.08 deleterious_low_confidence(0.04) possibly_damaging(0.827) TCGA-85-A4JB-01 22 50988104 50988104 C A KLHDC7B Silent p.G503G 0.14 TCGA-85-A4JB-01 2 101581326 101581326 A G NPAS2 Missense_Mutation p.M241V 0.16 tolerated(0.05) probably_damaging(0.977) TCGA-85-A4JB-01 2 103324631 103324631 C A SLC9A2 Missense_Mutation p.Q708K 0.26 tolerated(0.55) benign(0.001) TCGA-85-A4JB-01 2 108507285 108507285 C T RGPD4 3'UTR 0.18 TCGA-85-A4JB-01 2 108921116 108921116 T A SULT1C2 Silent p.G165G 0.28 TCGA-85-A4JB-01 2 109379761 109379761 C T RANBP2 Silent p.H922H 0.09 TCGA-85-A4JB-01 2 113674813 113674813 T A IL37 Missense_Mutation p.Y85N 0.28 tolerated(0.29) benign(0.018) TCGA-85-A4JB-01 2 128707941 128707941 C G SAP130 Missense_Mutation p.A848P 0.14 tolerated_low_confidence(0.1) benign(0.261) TCGA-85-A4JB-01 2 131520231 131520231 C T AMER3 Missense_Mutation p.R196W 0.28 deleterious(0) probably_damaging(0.91) TCGA-85-A4JB-01 2 136480117 136480117 G A R3HDM1 Missense_Mutation p.E980K 0.20 deleterious(0) possibly_damaging(0.533) TCGA-85-A4JB-01 2 136561692 136561692 T C LCT Missense_Mutation p.I1491V 0.26 deleterious(0) benign(0.314) TCGA-85-A4JB-01 2 141243066 141243066 C T LRP1B Missense_Mutation p.A3091T 0.16 possibly_damaging(0.787) TCGA-85-A4JB-01 2 141665487 141665487 T A LRP1B Missense_Mutation p.K1160I 0.12 benign(0.086) TCGA-85-A4JB-01 2 141751653 141751653 C G LRP1B Missense_Mutation p.C852S 0.20 possibly_damaging(0.784) TCGA-85-A4JB-01 2 163256800 163256800 C A KCNH7 Missense_Mutation p.G769V 0.10 deleterious(0) probably_damaging(0.999) TCGA-85-A4JB-01 2 170003374 170003374 C G LRP2 Missense_Mutation p.G4229A 0.13 probably_damaging(1) TCGA-85-A4JB-01 2 171262059 171262059 A G MYO3B Silent p.K812K 0.29 TCGA-85-A4JB-01 2 179446497 179446497 A G TTN Silent p.Y22166Y 0.36 TCGA-85-A4JB-01 2 179482082 179482082 A T TTN Missense_Mutation p.N15910K 0.29 TCGA-85-A4JB-01 2 179497757 179497757 A T TTN Silent p.I14367I 0.28 TCGA-85-A4JB-01 2 179610355 179610355 T A TTN Intron 0.09 TCGA-85-A4JB-01 2 185803535 185803535 C A ZNF804A Missense_Mutation p.L1138I 0.08 deleterious(0.05) probably_damaging(0.952) TCGA-85-A4JB-01 2 200188657 200188657 C A SATB2 Missense_Mutation p.D471Y 0.35 deleterious(0) benign(0.097) TCGA-85-A4JB-01 2 207170458 207170458 A T ZDBF2 Missense_Mutation p.R402S 0.26 deleterious(0.04) possibly_damaging(0.599) TCGA-85-A4JB-01 2 208598722 208598722 C G CCNYL1 Intron 0.18 TCGA-85-A4JB-01 2 210642276 210642276 G T UNC80 Missense_Mutation p.R198M 0.26 probably_damaging(0.989) TCGA-85-A4JB-01 2 210642277 210642277 G T UNC80 Missense_Mutation p.R198S 0.26 probably_damaging(0.962) TCGA-85-A4JB-01 2 213872708 213872708 T A IKZF2 Missense_Mutation p.Q319H 0.31 deleterious(0.01) probably_damaging(0.993) TCGA-85-A4JB-01 2 220505285 220505285 G - SLC4A3 Frame_Shift_Del p.A1165Qfs*10 0.13 TCGA-85-A4JB-01 2 224462475 224462475 G T SCG2 Missense_Mutation p.A509D 0.24 deleterious(0) probably_damaging(0.986) TCGA-85-A4JB-01 2 233243446 233243446 C A ALPP 5'UTR 0.29 TCGA-85-A4JB-01 2 233243447 233243447 C A ALPP 5'UTR 0.30 TCGA-85-A4JB-01 2 233246297 233246297 A T ALPP Missense_Mutation p.Q467L 0.19 deleterious(0.03) possibly_damaging(0.845) TCGA-85-A4JB-01 2 238287569 238287569 C A COL6A3 Missense_Mutation p.G736V 0.24 probably_damaging(1) TCGA-85-A4JB-01 2 239140768 239140768 A T AC016757.3 5'Flank 0.26 TCGA-85-A4JB-01 2 39088313 39088313 G A DHX57 Silent p.T413T 0.17 TCGA-85-A4JB-01 2 44099211 44099211 G T ABCG8 Missense_Mutation p.R354L 0.23 deleterious(0.03) benign(0.246) TCGA-85-A4JB-01 2 44503077 44503077 A C SLC3A1 Missense_Mutation p.N135H 0.28 deleterious(0.01) possibly_damaging(0.759) TCGA-85-A4JB-01 2 49190399 49190399 C T FSHR Missense_Mutation p.D521N 0.29 deleterious(0) possibly_damaging(0.883) TCGA-85-A4JB-01 2 61297490 61297490 G A KIAA1841 Missense_Mutation p.S2N 0.30 tolerated_low_confidence(0.16) probably_damaging(0.968) TCGA-85-A4JB-01 2 63631220 63631220 A T WDPCP Missense_Mutation p.F466L 0.25 deleterious(0.02) benign(0.4) TCGA-85-A4JB-01 2 79386632 79386632 T C REG3A 5'UTR 0.26 TCGA-85-A4JB-01 2 88828951 88828951 A G TEX37 Missense_Mutation p.I168V 0.18 tolerated_low_confidence(0.27) benign(0) TCGA-85-A4JB-01 2 89100695 89100695 T A ANKRD36BP2 RNA 0.15 TCGA-85-A4JB-01 2 89476011 89476011 C - IGKV2-24 Frame_Shift_Del p.G54Efs*5 0.16 TCGA-85-A4JB-01 2 9022642 9022642 T G MBOAT2 Silent p.R169R 0.33 TCGA-85-A4JB-01 2 90259959 90259959 G C IGKV1D-8 Missense_Mutation p.R21T 0.58 tolerated(0.11) benign(0.158) TCGA-85-A4JB-01 3 100096693 100096693 T A TOMM70A Missense_Mutation p.E316D 0.14 tolerated(0.54) benign(0.053) TCGA-85-A4JB-01 3 105459382 105459382 G C CBLB Missense_Mutation p.N313K 0.25 deleterious(0) probably_damaging(0.986) TCGA-85-A4JB-01 3 119462840 119462840 C A MAATS1 Missense_Mutation p.H567N 0.27 tolerated(0.29) benign(0.257) TCGA-85-A4JB-01 3 124839580 124839580 C T SLC12A8 Intron 0.15 TCGA-85-A4JB-01 3 125179667 125179667 C A SNX4 Nonsense_Mutation p.E298* 0.16 TCGA-85-A4JB-01 3 127292541 127292541 G A TPRA1 Silent p.A315A 0.26 TCGA-85-A4JB-01 3 140178543 140178543 T A CLSTN2 Missense_Mutation p.M385K 0.21 deleterious(0) probably_damaging(0.979) TCGA-85-A4JB-01 3 148459642 148459642 T A AGTR1 Missense_Mutation p.C274S 0.24 deleterious(0) probably_damaging(1) TCGA-85-A4JB-01 3 172241037 172241041 ACTGA - TNFSF10 Splice_Site p.X44_splice 0.20 TCGA-85-A4JB-01 3 196778491 196778491 C G DLG1 Missense_Mutation p.E877D 0.08 tolerated(1) benign(0.002) TCGA-85-A4JB-01 3 197428676 197428676 C A KIAA0226 Silent p.L210L 0.14 TCGA-85-A4JB-01 3 32859527 32859527 C T TRIM71 5'UTR 0.21 TCGA-85-A4JB-01 3 35770806 35770806 T G ARPP21 Missense_Mutation p.S379A 0.41 tolerated(0.06) benign(0.06) TCGA-85-A4JB-01 3 38647530 38647530 T A SCN5A Missense_Mutation p.E417V 0.30 deleterious(0) probably_damaging(0.999) TCGA-85-A4JB-01 3 48696934 48696934 G A CELSR3 Missense_Mutation p.P1045L 0.27 deleterious(0) probably_damaging(1) TCGA-85-A4JB-01 3 48716838 48716838 C A NCKIPSD Missense_Mutation p.M514I 0.36 tolerated(0.12) benign(0.157) TCGA-85-A4JB-01 3 48716839 48716839 A T NCKIPSD Missense_Mutation p.M514K 0.35 deleterious(0.01) benign(0.157) TCGA-85-A4JB-01 3 49008087 49008087 G A ARIH2 Silent p.Q240Q 0.08 TCGA-85-A4JB-01 3 65361509 65361509 C A MAGI1 Missense_Mutation p.C1036F 0.31 tolerated(0.45) possibly_damaging(0.905) TCGA-85-A4JB-01 3 86996004 86996004 G A VGLL3 3'UTR 0.33 TCGA-85-A4JB-01 4 104062009 104062009 C A CENPE Missense_Mutation p.D1906Y 0.11 possibly_damaging(0.839) TCGA-85-A4JB-01 4 104081938 104081938 T C CENPE Splice_Site p.X711_splice 0.45 TCGA-85-A4JB-01 4 110451454 110451454 G T SEC24B Missense_Mutation p.R1029L 0.33 deleterious(0) probably_damaging(0.999) TCGA-85-A4JB-01 4 110901232 110901232 C G EGF Missense_Mutation p.R720G 0.12 deleterious(0) probably_damaging(0.992) TCGA-85-A4JB-01 4 114277202 114277202 A - ANK2 Frame_Shift_Del p.K2477Rfs*2 0.24 TCGA-85-A4JB-01 4 120241968 120241968 C T FABP2 Missense_Mutation p.A33T 0.31 deleterious(0.03) benign(0.011) TCGA-85-A4JB-01 4 126411117 126411117 G T FAT4 Silent p.G4380G 0.35 TCGA-85-A4JB-01 4 157688926 157688926 T G PDGFC Missense_Mutation p.E307A 0.36 deleterious(0) probably_damaging(0.999) TCGA-85-A4JB-01 4 157688927 157688927 C A PDGFC Nonsense_Mutation p.E307* 0.34 TCGA-85-A4JB-01 4 159747177 159747177 G T FNIP2 Nonsense_Mutation p.E73* 0.28 TCGA-85-A4JB-01 4 167810283 167810283 C G SPOCK3 Missense_Mutation p.R199T 0.18 tolerated(0.26) benign(0.173) TCGA-85-A4JB-01 4 170913401 170913401 G T MFAP3L Silent p.R120R 0.38 TCGA-85-A4JB-01 4 17616293 17616293 G T MED28 Missense_Mutation p.G6W 0.11 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-85-A4JB-01 4 187540488 187540488 C A FAT1 Missense_Mutation p.D2418Y 0.40 probably_damaging(1) TCGA-85-A4JB-01 4 20535244 20535244 G T SLIT2 Nonsense_Mutation p.G580* 0.10 TCGA-85-A4JB-01 4 42581908 42581908 T C ATP8A1 Missense_Mutation p.M308V 0.17 deleterious(0) benign(0.005) TCGA-85-A4JB-01 4 44624449 44624449 G T YIPF7 Silent p.A275A 0.27 TCGA-85-A4JB-01 4 46264116 46264116 G T GABRA2 Missense_Mutation p.L296I 0.18 deleterious(0) probably_damaging(0.927) TCGA-85-A4JB-01 4 47840060 47840060 T C CORIN 5'Flank 0.20 TCGA-85-A4JB-01 4 47840061 47840061 C A CORIN 5'Flank 0.20 TCGA-85-A4JB-01 4 55976888 55976888 C A KDR Missense_Mutation p.A342S 0.17 deleterious(0.01) benign(0.201) TCGA-85-A4JB-01 4 62849215 62849215 G A LPHN3 Missense_Mutation p.E976K 0.13 deleterious(0.01) probably_damaging(0.981) TCGA-85-A4JB-01 4 71471994 71471994 T A AMBN Silent p.A297A 0.28 TCGA-85-A4JB-01 4 72420918 72420918 G C SLC4A4 Missense_Mutation p.G919A 0.11 deleterious(0.01) probably_damaging(0.94) TCGA-85-A4JB-01 4 76817532 76817532 G C PPEF2 5'UTR 0.10 TCGA-85-A4JB-01 4 77677677 77677677 G A SHROOM3 Silent p.Q1595Q 0.23 TCGA-85-A4JB-01 4 80328009 80328009 G A GK2 Missense_Mutation p.P449L 0.17 deleterious(0) probably_damaging(0.952) TCGA-85-A4JB-01 4 84376615 84376615 C A HELQ Nonsense_Mutation p.G78* 0.21 TCGA-85-A4JB-01 4 90872802 90872802 G T MMRN1 Silent p.T1055T 0.24 TCGA-85-A4JB-01 4 96127919 96127919 A T UNC5C Missense_Mutation p.L588M 0.32 deleterious(0.02) probably_damaging(0.996) TCGA-85-A4JB-01 5 108382899 108382899 G T FER Nonsense_Mutation p.G642* 0.22 TCGA-85-A4JB-01 5 108382900 108382900 G T FER Splice_Site p.X642_splice 0.21 TCGA-85-A4JB-01 5 11397162 11397162 G A CTNND2 Missense_Mutation p.T198M 0.20 deleterious(0.04) benign(0.223) TCGA-85-A4JB-01 5 127730935 127730935 C A FBN2 Missense_Mutation p.V371L 0.31 tolerated(0.67) benign(0.145) TCGA-85-A4JB-01 5 132056402 132056402 T A KIF3A Missense_Mutation p.K172I 0.42 deleterious(0) probably_damaging(0.992) TCGA-85-A4JB-01 5 140181738 140181738 A T PCDHA3 Missense_Mutation p.Q319L 0.31 tolerated_low_confidence(0.22) benign(0.044) TCGA-85-A4JB-01 5 140735706 140735706 A T PCDHGA4 Silent p.G313G 0.25 TCGA-85-A4JB-01 5 140958095 140958095 T C DIAPH1 Missense_Mutation p.H344R 0.22 unknown(0) TCGA-85-A4JB-01 5 14610404 14610404 A T FAM105A Missense_Mutation p.Y351F 0.23 deleterious(0) probably_damaging(0.997) TCGA-85-A4JB-01 5 147470775 147470775 G C SPINK5 Missense_Mutation p.R217P 0.29 tolerated(0.11) benign(0.111) TCGA-85-A4JB-01 5 148626062 148626062 T C ABLIM3 Missense_Mutation p.F502L 0.29 tolerated(0.46) benign(0.1) TCGA-85-A4JB-01 5 149221934 149221934 A G PPARGC1B Missense_Mutation p.N937S 0.24 tolerated(1) benign(0.002) TCGA-85-A4JB-01 5 149314260 149314260 C A PDE6A Missense_Mutation p.V166L 0.21 tolerated(0.08) benign(0.324) TCGA-85-A4JB-01 5 16067792 16067792 T G MARCH11 Missense_Mutation p.S333R 0.08 tolerated(0.07) benign(0.402) TCGA-85-A4JB-01 5 161116690 161116690 T - GABRA6 Frame_Shift_Del p.Y194Tfs*3 0.22 TCGA-85-A4JB-01 5 178540904 178540904 A G ADAMTS2 Silent p.D1200D 0.14 TCGA-85-A4JB-01 5 179302058 179302058 C A TBC1D9B Missense_Mutation p.S677I 0.09 deleterious(0) probably_damaging(1) TCGA-85-A4JB-01 5 21975491 21975491 G T CDH12 Missense_Mutation p.H79N 0.18 deleterious(0) probably_damaging(0.996) TCGA-85-A4JB-01 5 23526494 23526494 G - PRDM9 Frame_Shift_Del p.D434Ifs*30 0.24 TCGA-85-A4JB-01 5 24593680 24593680 G T CDH10 5'UTR 0.22 TCGA-85-A4JB-01 5 24593681 24593681 G C CDH10 5'UTR 0.22 TCGA-85-A4JB-01 5 33588901 33588901 C A ADAMTS12 Nonsense_Mutation p.E890* 0.26 TCGA-85-A4JB-01 5 36049457 36049457 T C UGT3A2 Missense_Mutation p.N126S 0.25 tolerated(0.75) benign(0.001) TCGA-85-A4JB-01 5 37046264 37046264 A T NIPBL Silent p.S2184S 0.24 TCGA-85-A4JB-01 5 37396669 37396669 G C WDR70 Missense_Mutation p.E163D 0.15 tolerated(0.92) benign(0.004) TCGA-85-A4JB-01 5 5461176 5461176 G T KIAA0947 Missense_Mutation p.D577Y 0.24 deleterious(0.01) possibly_damaging(0.689) TCGA-85-A4JB-01 5 64314280 64314280 A T CWC27 3'UTR 0.23 TCGA-85-A4JB-01 5 64956534 64956534 C A TRAPPC13 Missense_Mutation p.T236K 0.39 tolerated(0.16) possibly_damaging(0.864) TCGA-85-A4JB-01 5 85578722 85578722 G T NBPF22P RNA 0.30 TCGA-85-A4JB-01 5 89949600 89949600 G T GPR98 Missense_Mutation p.L1403F 0.45 benign(0.004) TCGA-85-A4JB-01 6 111694480 111694480 T C REV3L Missense_Mutation p.K1693R 0.22 tolerated_low_confidence(0.23) probably_damaging(0.967) TCGA-85-A4JB-01 6 117593635 117593635 G A VGLL2 Missense_Mutation p.C311Y 0.20 deleterious_low_confidence(0) benign(0.154) TCGA-85-A4JB-01 6 117609562 117609562 C A ROS1 3'UTR 0.33 TCGA-85-A4JB-01 6 117710871 117710871 G A ROS1 Silent p.I467I 0.27 TCGA-85-A4JB-01 6 12164608 12164608 A G HIVEP1 Missense_Mutation p.T2691A 0.18 tolerated(1) benign(0.001) TCGA-85-A4JB-01 6 126210298 126210299 TG - NCOA7 Frame_Shift_Del p.S368Rfs*10 0.10 TCGA-85-A4JB-01 6 129609157 129609157 T G LAMA2 Missense_Mutation p.C901W 0.19 deleterious(0) probably_damaging(1) TCGA-85-A4JB-01 6 133785916 133785916 G T EYA4 Splice_Site p.X242_splice 0.23 TCGA-85-A4JB-01 6 137815428 137815428 G C OLIG3 5'UTR 0.27 TCGA-85-A4JB-01 6 139094938 139094938 C T CCDC28A Missense_Mutation p.R43W 0.22 tolerated_low_confidence(0.06) benign(0.001) TCGA-85-A4JB-01 6 144507810 144507810 G A STX11 Missense_Mutation p.D16N 0.22 tolerated(0.35) benign(0.003) TCGA-85-A4JB-01 6 144743038 144743038 A T UTRN Missense_Mutation p.M56L 0.22 tolerated(0.79) benign(0.151) TCGA-85-A4JB-01 6 152652499 152652499 C A SYNE1 Missense_Mutation p.V4441L 0.28 possibly_damaging(0.869) TCGA-85-A4JB-01 6 152784021 152784021 G T SYNE1 Missense_Mutation p.A701D 0.16 probably_damaging(0.933) TCGA-85-A4JB-01 6 160466856 160466856 G T IGF2R Silent p.A615A 0.16 TCGA-85-A4JB-01 6 160679385 160679385 G C SLC22A2 Missense_Mutation p.I135M 0.17 deleterious(0) probably_damaging(0.988) TCGA-85-A4JB-01 6 166571648 166571648 C T T 3'UTR 0.22 TCGA-85-A4JB-01 6 166952160 166952160 C A RPS6KA2 Missense_Mutation p.G79V 0.19 deleterious(0) probably_damaging(0.999) TCGA-85-A4JB-01 6 166952161 166952161 C A RPS6KA2 Nonsense_Mutation p.G79* 0.19 TCGA-85-A4JB-01 6 168226920 168226920 C G MLLT4 5'Flank 0.28 TCGA-85-A4JB-01 6 25479346 25479346 C T LRRC16A Intron 0.21 TCGA-85-A4JB-01 6 26246957 26246957 G A HIST1H4G Silent p.T83T 0.16 TCGA-85-A4JB-01 6 26463526 26463526 G T BTN2A1 Missense_Mutation p.R162L 0.21 tolerated(0.2) benign(0.023) TCGA-85-A4JB-01 6 27778119 27778119 G A HIST1H3H Missense_Mutation p.V90M 0.18 tolerated_low_confidence(0.05) possibly_damaging(0.611) TCGA-85-A4JB-01 6 28891195 28891195 G T TRIM27 Missense_Mutation p.A72D 0.21 deleterious(0.01) benign(0.004) TCGA-85-A4JB-01 6 29641033 29641033 C A ZFP57 Missense_Mutation p.E285D 0.21 tolerated(0.09) benign(0.159) TCGA-85-A4JB-01 6 30893777 30893777 C T VARS2 Nonsense_Mutation p.Q1058* 0.14 TCGA-85-A4JB-01 6 36922345 36922345 T A PI16 5'UTR 0.50 TCGA-85-A4JB-01 6 38560391 38560391 C G BTBD9 Missense_Mutation p.E259Q 0.06 tolerated(0.35) unknown(0) TCGA-85-A4JB-01 6 39073150 39073150 T C SAYSD1 3'UTR 0.21 TCGA-85-A4JB-01 6 41303964 41303964 C T NCR2 Silent p.I64I 0.29 TCGA-85-A4JB-01 6 43096775 43096775 G T PTK7 Missense_Mutation p.R55L 0.21 deleterious(0.02) probably_damaging(1) TCGA-85-A4JB-01 6 47847586 47847586 C A PTCHD4 Missense_Mutation p.A332S 0.21 deleterious(0.03) benign(0.149) TCGA-85-A4JB-01 6 49573478 49573478 A C RHAG 3'UTR 0.33 TCGA-85-A4JB-01 6 54806291 54806291 G C FAM83B Missense_Mutation p.S841T 0.17 tolerated(0.11) possibly_damaging(0.773) TCGA-85-A4JB-01 6 57398299 57398299 A G PRIM2 Silent p.G334G 0.11 TCGA-85-A4JB-01 6 70049265 70049265 G T BAI3 Missense_Mutation p.A1110S 0.14 deleterious(0.01) possibly_damaging(0.471) TCGA-85-A4JB-01 6 70926612 70926612 C A COL9A1 Silent p.G918G 0.09 TCGA-85-A4JB-01 6 71569841 71569841 A G B3GAT2 3'UTR 0.29 TCGA-85-A4JB-01 6 75865541 75865541 T C COL12A1 Missense_Mutation p.K1094E 0.22 possibly_damaging(0.527) TCGA-85-A4JB-01 6 76558095 76558095 C T MYO6 Missense_Mutation p.P309S 0.25 tolerated(0.23) unknown(0) TCGA-85-A4JB-01 6 84311107 84311107 G C SNAP91 Missense_Mutation p.P403A 0.25 tolerated(0.21) unknown(0) TCGA-85-A4JB-01 6 91269879 91269879 C A MAP3K7 Missense_Mutation p.W133L 0.22 deleterious(0) probably_damaging(1) TCGA-85-A4JB-01 7 102113500 102113500 C T LRWD1 3'UTR 0.09 TCGA-85-A4JB-01 7 105182969 105182969 G T RINT1 Missense_Mutation p.A130S 0.23 tolerated(1) benign(0.001) TCGA-85-A4JB-01 7 106545841 106545841 G C PIK3CG 3'UTR 0.09 TCGA-85-A4JB-01 7 107399673 107399673 G C CBLL1 3'UTR 0.30 TCGA-85-A4JB-01 7 107688485 107688485 C A LAMB4 Missense_Mutation p.K1398N 0.21 tolerated(0.37) benign(0) TCGA-85-A4JB-01 7 113519746 113519746 A G PPP1R3A Silent p.N467N 0.12 TCGA-85-A4JB-01 7 120704343 120704343 T C CPED1 Missense_Mutation p.C198R 0.08 deleterious(0) probably_damaging(0.916) TCGA-85-A4JB-01 7 123332648 123332648 C A WASL Missense_Mutation p.G367V 0.16 tolerated(0.15) unknown(0) TCGA-85-A4JB-01 7 128491348 128491348 G A FLNC Missense_Mutation p.G1868S 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-85-A4JB-01 7 128845510 128845510 C A SMO Nonsense_Mutation p.Y269* 0.14 TCGA-85-A4JB-01 7 129929535 129929535 C A CPA2 Missense_Mutation p.T403N 0.05 deleterious(0) probably_damaging(1) TCGA-85-A4JB-01 7 136700033 136700033 G A CHRM2 Missense_Mutation p.G141S 0.14 deleterious(0.03) probably_damaging(0.984) TCGA-85-A4JB-01 7 138235807 138235807 G T TRIM24 Splice_Site p.X382_splice 0.28 TCGA-85-A4JB-01 7 141719014 141719014 C A MGAM Missense_Mutation p.R115S 0.18 deleterious(0) probably_damaging(0.996) TCGA-85-A4JB-01 7 142564781 142564781 G - EPHB6 Frame_Shift_Del p.G569Afs*28 0.10 TCGA-85-A4JB-01 7 143826902 143826902 C A OR2A14 Missense_Mutation p.R233S 0.26 deleterious(0) probably_damaging(0.956) TCGA-85-A4JB-01 7 144069820 144069820 G A ARHGEF5 Silent p.E1340E 0.36 TCGA-85-A4JB-01 7 150939034 150939034 C T SMARCD3 Missense_Mutation p.D236N 0.12 deleterious(0) probably_damaging(0.973) TCGA-85-A4JB-01 7 151135283 151135283 G C CRYGN Silent p.V23V 0.11 TCGA-85-A4JB-01 7 23293798 23293798 G A GPNMB Silent p.V78V 0.10 TCGA-85-A4JB-01 7 27237867 27237869 TGT - HOXA13 In_Frame_Del p.N372del 0.23 TCGA-85-A4JB-01 7 2976744 2976744 C A CARD11 Missense_Mutation p.R423L 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-85-A4JB-01 7 31829845 31829845 T C PDE1C Intron 0.07 TCGA-85-A4JB-01 7 38356828 38356828 T C TRGV9 Silent p.A52A 0.27 TCGA-85-A4JB-01 7 39504193 39504193 C A POU6F2 Missense_Mutation p.L662M 0.19 deleterious(0.01) unknown(0) TCGA-85-A4JB-01 7 40133963 40133963 A G CDK13 Missense_Mutation p.Q1308R 0.16 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-85-A4JB-01 7 41739781 41739781 G C INHBA Missense_Mutation p.N64K 0.23 deleterious(0.01) benign(0.252) TCGA-85-A4JB-01 7 50514121 50514121 C T FIGNL1 Missense_Mutation p.D289N 0.21 tolerated(0.16) benign(0.007) TCGA-85-A4JB-01 7 55238353 55238353 A T EGFR Intron 0.24 TCGA-85-A4JB-01 7 5541368 5541368 G T FBXL18 Missense_Mutation p.Q178K 0.50 deleterious(0) probably_damaging(0.99) TCGA-85-A4JB-01 7 5769149 5769149 G A RNF216 Missense_Mutation p.L435F 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-85-A4JB-01 7 64452201 64452201 A G ERV3-1 Missense_Mutation p.W402R 0.13 tolerated(0.36) benign(0.415) TCGA-85-A4JB-01 7 71142229 71142229 G C WBSCR17 Missense_Mutation p.D480H 0.07 deleterious(0) probably_damaging(0.998) TCGA-85-A4JB-01 7 73511468 73511468 T C LIMK1 Missense_Mutation p.F117S 0.25 deleterious(0.04) possibly_damaging(0.661) TCGA-85-A4JB-01 7 81388112 81388112 A G HGF Missense_Mutation p.V88A 0.12 tolerated(0.51) benign(0.013) TCGA-85-A4JB-01 7 82583524 82583524 G T PCLO Silent p.R2249R 0.32 TCGA-85-A4JB-01 7 88963003 88963003 C T ZNF804B Missense_Mutation p.S236L 0.22 deleterious(0) possibly_damaging(0.642) TCGA-85-A4JB-01 7 92098936 92098936 A C ERVW-1 Missense_Mutation p.W254G 0.20 tolerated(0.33) benign(0.264) TCGA-85-A4JB-01 7 92818543 92818543 G T HEPACAM2 3'UTR 0.33 TCGA-85-A4JB-01 8 108972971 108972971 G T RSPO2 Missense_Mutation p.H120N 0.18 deleterious(0) benign(0.409) TCGA-85-A4JB-01 8 109455928 109455928 G A EMC2 Splice_Site p.X14_splice 0.19 TCGA-85-A4JB-01 8 110477172 110477172 T A PKHD1L1 Missense_Mutation p.I2704N 0.35 deleterious(0) possibly_damaging(0.838) TCGA-85-A4JB-01 8 113988130 113988130 C A CSMD3 Missense_Mutation p.R426S 0.43 tolerated(0.43) benign(0) TCGA-85-A4JB-01 8 124663878 124663878 T A KLHL38 Missense_Mutation p.D430V 0.06 deleterious(0) possibly_damaging(0.564) TCGA-85-A4JB-01 8 128752998 128752998 C T MYC Missense_Mutation p.R387W 0.16 deleterious(0.02) probably_damaging(0.99) TCGA-85-A4JB-01 8 139774682 139774682 C A COL22A1 Missense_Mutation p.G611W 0.36 unknown(0) TCGA-85-A4JB-01 8 140744380 140744380 C A TRAPPC9 Missense_Mutation p.V1139L 0.38 tolerated(0.59) benign(0.015) TCGA-85-A4JB-01 8 144773287 144773287 G A ZNF707 Silent p.E20E 0.06 TCGA-85-A4JB-01 8 144996165 144996165 C A PLEC Silent p.A2745A 0.21 TCGA-85-A4JB-01 8 16032717 16032717 G C MSR1 Missense_Mutation p.P66A 0.18 tolerated(0.45) probably_damaging(0.999) TCGA-85-A4JB-01 8 20110588 20110588 T A LZTS1 Missense_Mutation p.E285V 0.30 deleterious(0) possibly_damaging(0.582) TCGA-85-A4JB-01 8 21984969 21984969 G C HR Missense_Mutation p.S329C 0.14 deleterious(0) possibly_damaging(0.823) TCGA-85-A4JB-01 8 24192967 24192967 G T ADAM28 Missense_Mutation p.K460N 0.29 deleterious(0.03) possibly_damaging(0.517) TCGA-85-A4JB-01 8 39537680 39537680 T A ADAM18 Missense_Mutation p.S586T 0.36 tolerated(0.25) probably_damaging(0.959) TCGA-85-A4JB-01 8 42186697 42186697 C G IKBKB Missense_Mutation p.Q724E 0.11 tolerated(0.09) benign(0.004) TCGA-85-A4JB-01 8 43152443 43152443 G A POTEA RNA 0.18 TCGA-85-A4JB-01 8 52336223 52336223 G A PXDNL Silent p.D569D 0.12 TCGA-85-A4JB-01 8 63985620 63985620 C A TTPA Missense_Mutation p.A78S 0.47 tolerated(0.69) benign(0.001) TCGA-85-A4JB-01 8 67485730 67485730 T C MYBL1 Silent p.T494T 0.37 TCGA-85-A4JB-01 8 68421774 68421774 C T CPA6 Missense_Mutation p.G171E 0.24 deleterious(0.05) probably_damaging(0.982) TCGA-85-A4JB-01 8 73848281 73848281 C G KCNB2 Missense_Mutation p.R231G 0.17 deleterious(0.01) benign(0) TCGA-85-A4JB-01 8 76476239 76476239 C A HNF4G Missense_Mutation p.P416T 0.35 deleterious(0.03) benign(0.259) TCGA-85-A4JB-01 8 77616888 77616888 C A ZFHX4 Missense_Mutation p.P189T 0.44 possibly_damaging(0.803) TCGA-85-A4JB-01 8 86057819 86057819 A G LRRCC1 3'UTR 0.30 TCGA-85-A4JB-01 8 86388030 86388030 G T CA2 Missense_Mutation p.G150C 0.28 deleterious(0) probably_damaging(0.999) TCGA-85-A4JB-01 8 86392932 86392932 G C CA2 Missense_Mutation p.E233Q 0.15 deleterious(0.01) benign(0.143) TCGA-85-A4JB-01 8 87679249 87679249 G T CNGB3 Nonsense_Mutation p.Y252* 0.33 TCGA-85-A4JB-01 8 95522119 95522119 G A KIAA1429 Missense_Mutation p.L1226F 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-85-A4JB-01 8 95522120 95522120 C A KIAA1429 Missense_Mutation p.L1225F 0.13 deleterious(0.01) probably_damaging(0.984) TCGA-85-A4JB-01 9 112189317 112189317 T C PTPN3 Missense_Mutation p.H305R 0.32 deleterious(0) probably_damaging(1) TCGA-85-A4JB-01 9 115171187 115171187 G T HSDL2 Missense_Mutation p.G94V 0.34 deleterious(0) probably_damaging(1) TCGA-85-A4JB-01 9 130825705 130825705 C A NAIF1 3'UTR 0.33 TCGA-85-A4JB-01 9 13217211 13217211 G T MPDZ Missense_Mutation p.T390N 0.20 deleterious(0) probably_damaging(0.998) TCGA-85-A4JB-01 9 138645785 138645785 G T KCNT1 Missense_Mutation p.W146L 0.32 tolerated(0.24) benign(0.101) TCGA-85-A4JB-01 9 139888097 139888097 A C C9orf142 Missense_Mutation p.I186L 0.18 deleterious(0.04) possibly_damaging(0.894) TCGA-85-A4JB-01 9 140777330 140777330 C A CACNA1B Silent p.L175L 0.17 TCGA-85-A4JB-01 9 16435630 16435630 G C BNC2 Missense_Mutation p.N854K 0.41 deleterious(0) probably_damaging(1) TCGA-85-A4JB-01 9 33948484 33948484 G A UBAP2 Silent p.G386G 0.21 TCGA-85-A4JB-01 9 39171591 39171591 C A CNTNAP3 Missense_Mutation p.V370F 0.16 tolerated(0.11) possibly_damaging(0.891) TCGA-85-A4JB-01 9 69112907 69112907 G T RP11-87H9.3 5'Flank 0.16 TCGA-85-A4JB-01 9 93375689 93375689 G T DIRAS2 Missense_Mutation p.R141S 0.31 tolerated(0.66) benign(0.003) TCGA-85-A4JB-01 X 107834296 107834296 G T COL4A5 Missense_Mutation p.V392F 0.39 unknown(0) TCGA-85-A4JB-01 X 110497613 110497613 G - CAPN6 Frame_Shift_Del p.H62Ifs*2 0.27 TCGA-85-A4JB-01 X 111195620 111195620 T C TRPC5 Missense_Mutation p.N10S 0.24 tolerated_low_confidence(0.99) benign(0.005) TCGA-85-A4JB-01 X 114347866 114347866 T A LRCH2 Missense_Mutation p.E737D 0.38 deleterious(0.02) probably_damaging(0.997) TCGA-85-A4JB-01 X 122598914 122598914 C A GRIA3 Missense_Mutation p.L759M 0.44 deleterious(0) probably_damaging(0.997) TCGA-85-A4JB-01 X 125685456 125685456 G T DCAF12L1 Missense_Mutation p.A379D 0.51 deleterious(0) probably_damaging(0.98) TCGA-85-A4JB-01 X 135080680 135080680 G C SLC9A6 Missense_Mutation p.A215P 0.43 deleterious(0) probably_damaging(0.978) TCGA-85-A4JB-01 X 147014109 147014109 G T FMR1 Nonsense_Mutation p.G266* 0.36 TCGA-85-A4JB-01 X 150869049 150869049 G A PRRG3 Missense_Mutation p.M80I 0.15 tolerated(0.26) benign(0.104) TCGA-85-A4JB-01 X 153208306 153208306 C A RENBP Splice_Site p.X229_splice 0.48 TCGA-85-A4JB-01 X 21579671 21579671 T C CNKSR2 Silent p.S462S 0.35 TCGA-85-A4JB-01 X 21874981 21874981 G T YY2 Missense_Mutation p.A127S 0.48 tolerated(0.46) benign(0.032) TCGA-85-A4JB-01 X 24089738 24089738 G C EIF2S3 Missense_Mutation p.G359A 0.40 deleterious(0.01) possibly_damaging(0.69) TCGA-85-A4JB-01 X 26212208 26212208 C T MAGEB6 Missense_Mutation p.S82F 0.47 deleterious(0) benign(0.161) TCGA-85-A4JB-01 X 30872237 30872237 T C TAB3 Silent p.T515T 0.44 TCGA-85-A4JB-01 X 37028383 37028383 C A FAM47C Missense_Mutation p.P634T 0.42 deleterious(0) benign(0.058) TCGA-85-A4JB-01 X 41206892 41206892 G T DDX3X Splice_Site p.X637_splice 0.35 TCGA-85-A4JB-01 X 47497461 47497461 C A ELK1 Missense_Mutation p.V259F 0.29 tolerated(0.64) benign(0.069) TCGA-85-A4JB-01 X 48049661 48049661 C A SSX5 Missense_Mutation p.G166V 0.49 tolerated(0.21) benign(0.076) TCGA-85-A4JB-01 X 69249352 69249352 A T EDA Splice_Site p.X236_splice 0.40 TCGA-85-A4JB-01 X 71522670 71522670 G A CITED1 Missense_Mutation p.P43L 0.56 deleterious_low_confidence(0) benign(0.234) TCGA-85-A4JB-01 X 75648993 75648993 G T MAGEE1 Missense_Mutation p.V224L 0.50 tolerated_low_confidence(0.49) benign(0.003) TCGA-85-A4JC-01 10 104140436 104140436 C T GBF1 Silent p.V1721V 0.19 TCGA-85-A4JC-01 10 106907414 106907414 G T SORCS3 Missense_Mutation p.A448S 0.16 deleterious(0.03) probably_damaging(0.912) TCGA-85-A4JC-01 10 116198933 116198933 G C ABLIM1 Splice_Site p.X714_splice 0.07 TCGA-85-A4JC-01 10 25138662 25138662 T A PRTFDC1 3'UTR 0.12 TCGA-85-A4JC-01 10 30748383 30748383 A G MAP3K8 Missense_Mutation p.K409R 0.12 deleterious_low_confidence(0.04) possibly_damaging(0.582) TCGA-85-A4JC-01 10 69959219 69959219 G C MYPN Missense_Mutation p.G1127A 0.20 deleterious(0) probably_damaging(0.993) TCGA-85-A4JC-01 10 71677089 71677089 G A COL13A1 Silent p.K332K 0.15 TCGA-85-A4JC-01 10 88459073 88459073 C A LDB3 Intron 0.21 TCGA-85-A4JC-01 10 92617146 92617146 T C HTR7 Missense_Mutation p.T95A 0.14 deleterious(0) probably_damaging(0.996) TCGA-85-A4JC-01 10 96109078 96109078 G A NOC3L Nonsense_Mutation p.Q396* 0.10 TCGA-85-A4JC-01 11 103044011 103044011 G C DYNC2H1 Missense_Mutation p.L1845F 0.17 probably_damaging(0.955) TCGA-85-A4JC-01 11 111594359 111594359 C T SIK2 Nonsense_Mutation p.Q763* 0.15 TCGA-85-A4JC-01 11 125301069 125301069 C T PKNOX2 Silent p.I400I 0.22 TCGA-85-A4JC-01 11 18134133 18134133 A T SAA3P RNA 0.12 TCGA-85-A4JC-01 11 27520310 27520310 C G LIN7C Silent p.L160L 0.08 TCGA-85-A4JC-01 11 294372 294372 T C ATHL1 Silent p.F638F 0.26 TCGA-85-A4JC-01 11 36615032 36615032 C A RAG2 Silent p.R229R 0.12 TCGA-85-A4JC-01 11 48146534 48146534 G T PTPRJ Nonsense_Mutation p.E297* 0.16 TCGA-85-A4JC-01 11 51515991 51515991 C A OR4C46 Missense_Mutation p.T237N 0.13 deleterious_low_confidence(0) benign(0.424) TCGA-85-A4JC-01 11 59282922 59282922 C A OR4D9 Nonsense_Mutation p.C179* 0.14 TCGA-85-A4JC-01 11 60269494 60269494 G T MS4A12 Missense_Mutation p.K151N 0.07 deleterious(0.04) possibly_damaging(0.597) TCGA-85-A4JC-01 11 60269495 60269495 G T MS4A12 Nonsense_Mutation p.E152* 0.07 TCGA-85-A4JC-01 11 60292739 60292739 T A MS4A13 Silent p.T82T 0.12 TCGA-85-A4JC-01 11 60292740 60292740 C A MS4A13 Missense_Mutation p.L83I 0.12 deleterious(0.02) possibly_damaging(0.666) TCGA-85-A4JC-01 11 64799946 64799946 G C SNX15 Missense_Mutation p.G60A 0.15 tolerated(0.1) possibly_damaging(0.9) TCGA-85-A4JC-01 11 64940271 64940271 C A SPDYC Silent p.L211L 0.07 TCGA-85-A4JC-01 11 66392354 66392354 C T RBM14 Missense_Mutation p.S336F 0.07 deleterious(0) benign(0.002) TCGA-85-A4JC-01 11 67842291 67842291 C T CHKA Missense_Mutation p.E175K 0.19 deleterious(0) probably_damaging(0.951) TCGA-85-A4JC-01 11 73101943 73101943 A C RELT Silent p.T88T 0.16 TCGA-85-A4JC-01 11 82644706 82644706 C A C11orf82 Missense_Mutation p.P776T 0.14 deleterious(0) probably_damaging(1) TCGA-85-A4JC-01 12 101768670 101768670 G A UTP20 Missense_Mutation p.V2406I 0.14 tolerated(0.34) benign(0.008) TCGA-85-A4JC-01 12 124968228 124968228 G T NCOR2 Silent p.R109R 0.23 TCGA-85-A4JC-01 12 40643727 40643727 T A LRRK2 Missense_Mutation p.L313H 0.12 deleterious(0) probably_damaging(0.999) TCGA-85-A4JC-01 12 4398069 4398069 C T CCND2 Silent p.I211I 0.16 TCGA-85-A4JC-01 12 48376373 48376373 C A COL2A1 Missense_Mutation p.G738V 0.19 probably_damaging(1) TCGA-85-A4JC-01 12 51125172 51125172 C G DIP2B Missense_Mutation p.S1221C 0.07 deleterious(0) probably_damaging(0.994) TCGA-85-A4JC-01 12 56818691 56818691 C T TIMELESS Missense_Mutation p.E575K 0.17 tolerated(0.17) benign(0.003) TCGA-85-A4JC-01 12 57348835 57348835 C A RDH16 Missense_Mutation p.D143Y 0.10 deleterious(0) possibly_damaging(0.774) TCGA-85-A4JC-01 12 62946684 62946684 C A MON2 Missense_Mutation p.F980L 0.13 tolerated(0.4) benign(0.005) TCGA-85-A4JC-01 12 65609795 65609795 G A LEMD3 Silent p.K533K 0.09 TCGA-85-A4JC-01 12 69080784 69080784 A G NUP107 5'UTR 0.19 TCGA-85-A4JC-01 12 72969158 72969158 G A TRHDE Missense_Mutation p.R707Q 0.14 tolerated(0.47) benign(0.09) TCGA-85-A4JC-01 12 78444783 78444783 C G NAV3 Missense_Mutation p.S791C 0.09 deleterious(0.01) probably_damaging(0.976) TCGA-85-A4JC-01 13 28141969 28141969 T C LNX2 Silent p.Q221Q 0.10 TCGA-85-A4JC-01 13 32914593 32914593 G A BRCA2 Missense_Mutation p.R2034H 0.13 tolerated(1) benign(0) TCGA-85-A4JC-01 13 39262228 39262228 G T FREM2 Silent p.P249P 0.09 TCGA-85-A4JC-01 13 46656607 46656607 G A CPB2 Missense_Mutation p.S118L 0.16 tolerated(0.38) benign(0.301) TCGA-85-A4JC-01 13 76429453 76429453 C T LMO7 Intron 0.22 TCGA-85-A4JC-01 13 99574347 99574347 C A DOCK9 Silent p.L180L 0.30 TCGA-85-A4JC-01 14 102900892 102900892 G C TECPR2 Missense_Mutation p.E580Q 0.08 tolerated_low_confidence(0.26) benign(0.005) TCGA-85-A4JC-01 14 20850106 20850106 C A TEP1 Missense_Mutation p.G1464C 0.16 deleterious(0.05) benign(0.241) TCGA-85-A4JC-01 14 20850107 20850107 C A TEP1 Missense_Mutation p.M1463I 0.16 deleterious(0.01) benign(0.169) TCGA-85-A4JC-01 14 23549525 23549525 T G ACIN1 Missense_Mutation p.K398T 0.15 probably_damaging(0.994) TCGA-85-A4JC-01 14 24429148 24429148 C T DHRS4 Missense_Mutation p.S115F 0.16 deleterious(0.01) probably_damaging(0.965) TCGA-85-A4JC-01 14 24517975 24517975 G A LRRC16B 5'Flank 0.15 TCGA-85-A4JC-01 14 33290837 33290837 A G AKAP6 Missense_Mutation p.Y1273C 0.10 tolerated(0.07) benign(0.013) TCGA-85-A4JC-01 14 64854998 64854998 G T MTHFD1 5'Flank 0.24 TCGA-85-A4JC-01 14 68265227 68265227 G C ZFYVE26 Missense_Mutation p.I584M 0.17 deleterious(0.01) benign(0.23) TCGA-85-A4JC-01 14 68265271 68265271 G A ZFYVE26 Silent p.L570L 0.17 TCGA-85-A4JC-01 14 81251426 81251426 C A CEP128 Missense_Mutation p.R675M 0.14 tolerated(0.24) possibly_damaging(0.532) TCGA-85-A4JC-01 15 20170316 20170316 T A IGHV1OR15-9 Silent p.I13I 0.08 TCGA-85-A4JC-01 15 48451086 48451086 C T MYEF2 Missense_Mutation p.E251K 0.09 deleterious(0) probably_damaging(0.999) TCGA-85-A4JC-01 15 48748837 48748837 C T FBN1 Missense_Mutation p.E1807K 0.12 probably_damaging(0.993) TCGA-85-A4JC-01 15 67571762 67571762 C A IQCH Nonsense_Mutation p.S100* 0.07 TCGA-85-A4JC-01 15 81230170 81230170 G A KIAA1199 Missense_Mutation p.R1086Q 0.08 tolerated(0.34) benign(0.006) TCGA-85-A4JC-01 15 84488595 84488595 C T ADAMTSL3 Silent p.A132A 0.15 TCGA-85-A4JC-01 16 1395284 1395285 - C BAIAP3 Frame_Shift_Ins p.F696Lfs*63 0.21 TCGA-85-A4JC-01 16 20480937 20480937 C A ACSM2A Silent p.I164I 0.12 TCGA-85-A4JC-01 16 20492009 20492009 A G ACSM2A Missense_Mutation p.I466V 0.32 deleterious(0) benign(0.203) TCGA-85-A4JC-01 16 27225017 27225017 A C KDM8 Silent p.R242R 0.14 TCGA-85-A4JC-01 16 4038995 4038995 C A ADCY9 Missense_Mutation p.E770D 0.16 tolerated(0.15) benign(0.186) TCGA-85-A4JC-01 17 10231215 10231215 C G MYH13 Missense_Mutation p.E887Q 0.14 deleterious(0.02) possibly_damaging(0.494) TCGA-85-A4JC-01 17 18967340 18967340 C G SNORD3B-2 RNA 0.09 TCGA-85-A4JC-01 17 27041808 27041808 C A RAB34 Intron 0.27 TCGA-85-A4JC-01 17 27086805 27086805 T A FAM222B Missense_Mutation p.T58S 0.13 tolerated(0.11) probably_damaging(0.953) TCGA-85-A4JC-01 17 29556877 29556877 C T NF1 Nonsense_Mutation p.Q959* 0.21 TCGA-85-A4JC-01 17 39670836 39670836 G A KRT15 Intron 0.14 TCGA-85-A4JC-01 17 40344400 40344400 C T GHDC Missense_Mutation p.G250R 0.11 deleterious(0) probably_damaging(1) TCGA-85-A4JC-01 17 40725341 40725341 C G PSMC3IP Missense_Mutation p.K175N 0.20 deleterious(0) possibly_damaging(0.848) TCGA-85-A4JC-01 17 40725501 40725501 C G PSMC3IP Missense_Mutation p.E160Q 0.14 deleterious(0.04) benign(0.257) TCGA-85-A4JC-01 17 40726186 40726186 C G PSMC3IP Missense_Mutation p.D90H 0.16 deleterious(0) probably_damaging(0.982) TCGA-85-A4JC-01 17 41960676 41960676 G A MPP2 Silent p.N66N 0.25 TCGA-85-A4JC-01 17 4713231 4713231 C T PLD2 Missense_Mutation p.S256L 0.26 deleterious(0.04) benign(0.089) TCGA-85-A4JC-01 17 4718857 4718857 G T PLD2 Silent p.L420L 0.21 TCGA-85-A4JC-01 17 58258915 58258915 C G USP32 Missense_Mutation p.E1440Q 0.15 tolerated_low_confidence(0.09) benign(0.133) TCGA-85-A4JC-01 17 58258958 58258958 C G USP32 Missense_Mutation p.E1425D 0.10 deleterious_low_confidence(0.02) probably_damaging(0.982) TCGA-85-A4JC-01 17 67273835 67273835 T C ABCA5 Missense_Mutation p.I847M 0.18 tolerated(0.84) benign(0.009) TCGA-85-A4JC-01 17 7578449 7578449 C A TP53 Missense_Mutation p.A161S 0.22 deleterious(0) probably_damaging(1) TCGA-85-A4JC-01 17 7578450 7578450 C A TP53 Missense_Mutation p.M160I 0.22 tolerated(0.2) possibly_damaging(0.653) TCGA-85-A4JC-01 17 76459139 76459139 G C DNAH17 Missense_Mutation p.I2973M 0.08 possibly_damaging(0.751) TCGA-85-A4JC-01 17 78269487 78269487 T C RNF213 Missense_Mutation p.V629A 0.35 benign(0.001) TCGA-85-A4JC-01 17 78343414 78343414 G C RNF213 Missense_Mutation p.E4090Q 0.16 benign(0.012) TCGA-85-A4JC-01 17 8138417 8138417 G A CTC1 Missense_Mutation p.P465S 0.19 deleterious(0) probably_damaging(0.999) TCGA-85-A4JC-01 17 8473126 8473127 - C MYH10 Frame_Shift_Ins p.E223Gfs*3 0.22 TCGA-85-A4JC-01 18 10471806 10471806 C A APCDD1 Missense_Mutation p.F174L 0.18 tolerated(0.61) benign(0.015) TCGA-85-A4JC-01 18 10671520 10671520 G C PIEZO2 3'Flank 0.15 TCGA-85-A4JC-01 18 2885101 2885101 C A EMILIN2 Missense_Mutation p.P133T 0.17 tolerated(0.21) possibly_damaging(0.521) TCGA-85-A4JC-01 18 54293624 54293624 C A TXNL1 Missense_Mutation p.V55F 0.15 deleterious(0) possibly_damaging(0.704) TCGA-85-A4JC-01 18 56202315 56202315 G C ALPK2 Missense_Mutation p.L1702V 0.19 tolerated(0.54) benign(0.05) TCGA-85-A4JC-01 18 8825580 8825580 G A SOGA2 Missense_Mutation p.V1358M 0.19 deleterious(0.04) probably_damaging(0.919) TCGA-85-A4JC-01 18 9182474 9182474 C G ANKRD12 Missense_Mutation p.S15C 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-85-A4JC-01 19 15082606 15082606 G A SLC1A6 Silent p.L96L 0.16 TCGA-85-A4JC-01 19 18182981 18182981 G A IL12RB1 Missense_Mutation p.S321L 0.12 tolerated(0.3) benign(0.008) TCGA-85-A4JC-01 19 22939549 22939549 G T ZNF99 3'Flank 0.11 TCGA-85-A4JC-01 19 29698779 29698779 G C UQCRFS1 Missense_Mutation p.F167L 0.13 deleterious(0.02) benign(0.203) TCGA-85-A4JC-01 19 36507823 36507823 C T CLIP3 Silent p.E525E 0.21 TCGA-85-A4JC-01 19 47422734 47422734 C T ARHGAP35 Nonsense_Mutation p.Q268* 0.21 TCGA-85-A4JC-01 19 51645561 51645561 G T SIGLEC7 5'UTR 0.08 TCGA-85-A4JC-01 19 52249535 52249535 C T FPR1 Missense_Mutation p.R238H 0.18 tolerated(0.1) possibly_damaging(0.597) TCGA-85-A4JC-01 19 53269781 53269781 C A ZNF600 Nonsense_Mutation p.G410* 0.18 TCGA-85-A4JC-01 1 117311089 117311089 A T CD2 Missense_Mutation p.E247V 0.09 deleterious(0) probably_damaging(0.987) TCGA-85-A4JC-01 1 150478144 150478144 C T TARS2 Silent p.I657I 0.10 TCGA-85-A4JC-01 1 156568072 156568072 A T GPATCH4 Missense_Mutation p.W70R 0.13 deleterious(0) possibly_damaging(0.591) TCGA-85-A4JC-01 1 1572821 1572821 C T CDK11B Missense_Mutation p.E510K 0.09 unknown(0) TCGA-85-A4JC-01 1 160319338 160319338 G A NCSTN Splice_Site p.X105_splice 0.15 TCGA-85-A4JC-01 1 162343916 162343916 G A C1orf111 Silent p.S236S 0.11 TCGA-85-A4JC-01 1 169521813 169521813 C T F5 Silent p.Q426Q 0.08 TCGA-85-A4JC-01 1 17592199 17592199 G A PADI3 Missense_Mutation p.R131K 0.07 tolerated(0.68) benign(0.012) TCGA-85-A4JC-01 1 176564559 176564559 T A PAPPA2 Missense_Mutation p.Y607N 0.18 deleterious(0.04) probably_damaging(0.928) TCGA-85-A4JC-01 1 179311310 179311310 C T SOAT1 Missense_Mutation p.S281L 0.15 tolerated(0.6) benign(0.021) TCGA-85-A4JC-01 1 196967359 196967359 A G CFHR5 Missense_Mutation p.R358G 0.15 deleterious(0) benign(0.387) TCGA-85-A4JC-01 1 201013477 201013477 C G CACNA1S Silent p.A1592A 0.06 TCGA-85-A4JC-01 1 205312394 205312394 C A KLHDC8A Silent p.L113L 0.15 TCGA-85-A4JC-01 1 206648236 206648236 T C IKBKE Missense_Mutation p.M86T 0.18 deleterious(0) probably_damaging(0.925) TCGA-85-A4JC-01 1 215914760 215914760 G T USH2A Missense_Mutation p.P3890T 0.16 probably_damaging(1) TCGA-85-A4JC-01 1 216166429 216166429 G T USH2A Silent p.A2246A 0.13 TCGA-85-A4JC-01 1 216496984 216496984 G T USH2A Missense_Mutation p.P461Q 0.15 possibly_damaging(0.562) TCGA-85-A4JC-01 1 233120303 233120303 T C PCNXL2 Intron 0.09 TCGA-85-A4JC-01 1 237813320 237813320 G T RYR2 Silent p.V2552V 0.12 TCGA-85-A4JC-01 1 237947416 237947416 G T RYR2 Missense_Mutation p.R4135L 0.14 probably_damaging(0.992) TCGA-85-A4JC-01 1 240256654 240256654 C A FMN2 Silent p.T415T 0.11 TCGA-85-A4JC-01 1 240286626 240286626 C G FMN2 Missense_Mutation p.T588R 0.05 unknown(0) TCGA-85-A4JC-01 1 24113913 24113913 C T PITHD1 3'UTR 0.29 TCGA-85-A4JC-01 1 248308651 248308651 C T OR2M5 Missense_Mutation p.L68F 0.14 tolerated(0.18) benign(0.32) TCGA-85-A4JC-01 1 26497307 26497307 G T ZNF593 3'UTR 0.20 TCGA-85-A4JC-01 1 29139036 29139036 C A OPRD1 Silent p.A47A 0.15 TCGA-85-A4JC-01 1 29486886 29486886 C G SRSF4 Splice_Site p.X84_splice 0.16 TCGA-85-A4JC-01 1 33321571 33321571 C T S100PBP Nonsense_Mutation p.Q387* 0.20 TCGA-85-A4JC-01 1 40688245 40688245 G C RLF Splice_Site p.X271_splice 0.12 TCGA-85-A4JC-01 1 43886964 43886964 C A SZT2 Missense_Mutation p.S539Y 0.14 deleterious(0) probably_damaging(0.984) TCGA-85-A4JC-01 1 45340411 45340411 T C EIF2B3 Missense_Mutation p.I381V 0.32 tolerated(0.31) benign(0.043) TCGA-85-A4JC-01 1 47650729 47650729 C T PDZK1IP1 Missense_Mutation p.D73N 0.09 tolerated(0.09) possibly_damaging(0.629) TCGA-85-A4JC-01 1 52849578 52849578 T C ORC1 Missense_Mutation p.H596R 0.12 deleterious(0) possibly_damaging(0.874) TCGA-85-A4JC-01 1 53440441 53440441 G T SCP2 Missense_Mutation p.G175V 0.14 deleterious(0) probably_damaging(0.958) TCGA-85-A4JC-01 1 54262790 54262790 G C NDC1 Missense_Mutation p.S417C 0.12 deleterious(0.02) possibly_damaging(0.755) TCGA-85-A4JC-01 1 68564471 68564471 A T WLS Intron 0.18 TCGA-85-A4JC-01 1 70488896 70488896 T C LRRC7 Missense_Mutation p.W507R 0.19 tolerated_low_confidence(0.53) benign(0.016) TCGA-85-A4JC-01 1 70503946 70503947 - AA LRRC7 Frame_Shift_Ins p.N776Kfs*21 0.13 TCGA-85-A4JC-01 1 91779046 91779046 A T HFM1 Missense_Mutation p.L1084H 0.17 deleterious(0) probably_damaging(0.988) TCGA-85-A4JC-01 1 9775643 9775643 C T PIK3CD Silent p.L62L 0.20 TCGA-85-A4JC-01 1 9775652 9775652 C T PIK3CD Silent p.P65P 0.15 TCGA-85-A4JC-01 20 17474781 17474781 C T BFSP1 Missense_Mutation p.V646M 0.23 tolerated(0.08) probably_damaging(0.999) TCGA-85-A4JC-01 20 21312209 21312209 C T XRN2 Missense_Mutation p.S196F 0.22 deleterious(0) probably_damaging(1) TCGA-85-A4JC-01 20 30419617 30419617 G T MYLK2 Missense_Mutation p.E512D 0.08 tolerated(0.19) benign(0.294) TCGA-85-A4JC-01 20 32379086 32379086 G A ZNF341 Silent p.L769L 0.09 TCGA-85-A4JC-01 20 37353327 37353327 C T SLC32A1 5'UTR 0.12 TCGA-85-A4JC-01 20 40141620 40141620 T A CHD6 Silent p.G239G 0.16 TCGA-85-A4JC-01 20 42089342 42089342 G T SRSF6 Splice_Site p.X225_splice 0.13 TCGA-85-A4JC-01 20 44002647 44002647 T G TP53TG5 Missense_Mutation p.D258A 0.14 tolerated(0.73) benign(0.011) TCGA-85-A4JC-01 20 47991487 47991487 T C KCNB1 Missense_Mutation p.I204V 0.13 tolerated(0.36) possibly_damaging(0.633) TCGA-85-A4JC-01 20 50769350 50769350 G C ZFP64 Missense_Mutation p.L461V 0.07 tolerated(0.08) benign(0.002) TCGA-85-A4JC-01 20 58452455 58452455 C G SYCP2 Missense_Mutation p.E1045D 0.09 tolerated(0.12) benign(0.024) TCGA-85-A4JC-01 20 826274 826274 G T FAM110A Missense_Mutation p.R276L 0.12 deleterious(0) probably_damaging(0.999) TCGA-85-A4JC-01 21 10906896 10906896 G T TPTE 3'UTR 0.08 TCGA-85-A4JC-01 21 14982750 14982750 C G POTED Missense_Mutation p.H67Q 0.13 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-85-A4JC-01 21 15753781 15753781 C A HSPA13 Missense_Mutation p.D37Y 0.10 deleterious(0) probably_damaging(1) TCGA-85-A4JC-01 21 19685373 19685373 G A TMPRSS15 Missense_Mutation p.T685M 0.11 tolerated(0.45) benign(0.017) TCGA-85-A4JC-01 22 16256597 16256597 C A POTEH 3'UTR 0.05 TCGA-85-A4JC-01 22 30857550 30857550 G A SEC14L3 Silent p.C301C 0.16 TCGA-85-A4JC-01 22 32753948 32753948 C T RFPL3 5'UTR 0.27 TCGA-85-A4JC-01 22 46860166 46860166 G A CELSR1 Silent p.I1207I 0.08 TCGA-85-A4JC-01 2 109400127 109400127 G C RANBP2 Missense_Mutation p.D3149H 0.08 deleterious(0) possibly_damaging(0.519) TCGA-85-A4JC-01 2 111430240 111430240 G A BUB1 Silent p.Y140Y 0.10 TCGA-85-A4JC-01 2 113785423 113785423 G A IL36B Intron 0.20 TCGA-85-A4JC-01 2 113785501 113785501 G A IL36B Intron 0.10 TCGA-85-A4JC-01 2 144194541 144194541 T C ARHGAP15 Silent p.S211S 0.16 TCGA-85-A4JC-01 2 158401075 158401075 C G ACVR1C Missense_Mutation p.Q275H 0.07 tolerated(0.74) benign(0.005) TCGA-85-A4JC-01 2 159537301 159537301 G A PKP4 3'UTR 0.08 TCGA-85-A4JC-01 2 160289366 160289366 C A BAZ2B Missense_Mutation p.S601I 0.07 benign(0.403) TCGA-85-A4JC-01 2 168997230 168997230 C A STK39 Missense_Mutation p.V223F 0.24 tolerated(0.09) benign(0.285) TCGA-85-A4JC-01 2 173460568 173460568 A T PDK1 Silent p.T394T 0.17 TCGA-85-A4JC-01 2 175335136 175335136 G A GPR155 Silent p.F336F 0.12 TCGA-85-A4JC-01 2 179454887 179454887 C G TTN Missense_Mutation p.R20522T 0.11 TCGA-85-A4JC-01 2 179489258 179489258 C G TTN Missense_Mutation p.E14917Q 0.08 TCGA-85-A4JC-01 2 188348876 188348876 T C TFPI Silent p.Q201Q 0.17 TCGA-85-A4JC-01 2 189928718 189928718 T A COL5A2 Missense_Mutation p.K586N 0.10 possibly_damaging(0.891) TCGA-85-A4JC-01 2 197559773 197559773 G C CCDC150 Missense_Mutation p.D505H 0.10 deleterious(0.02) benign(0.048) TCGA-85-A4JC-01 2 20166580 20166580 C G WDR35 Missense_Mutation p.E367Q 0.12 tolerated(0.27) benign(0.34) TCGA-85-A4JC-01 2 201846407 201846407 G C FAM126B Missense_Mutation p.I393M 0.17 tolerated(0.24) benign(0.009) TCGA-85-A4JC-01 2 208133998 208133998 G C AC007879.6 Intron 0.15 TCGA-85-A4JC-01 2 210560418 210560418 G A MAP2 Missense_Mutation p.C1175Y 0.08 deleterious_low_confidence(0.02) possibly_damaging(0.633) TCGA-85-A4JC-01 2 212251651 212251651 G A ERBB4 Silent p.A1136A 0.13 TCGA-85-A4JC-01 2 212589809 212589809 C A ERBB4 Missense_Mutation p.D245Y 0.16 deleterious(0) probably_damaging(0.918) TCGA-85-A4JC-01 2 220034659 220034659 G A SLC23A3 Silent p.S16S 0.18 TCGA-85-A4JC-01 2 220102588 220102588 A G GLB1L Missense_Mutation p.M478T 0.08 deleterious(0.03) probably_damaging(0.999) TCGA-85-A4JC-01 2 220371028 220371028 G T GMPPA Missense_Mutation p.R349L 0.10 tolerated(0.21) benign(0.086) TCGA-85-A4JC-01 2 238249759 238249759 G A COL6A3 Silent p.G2600G 0.09 TCGA-85-A4JC-01 2 238881826 238881826 C T UBE2F Missense_Mutation p.S26L 0.05 tolerated(0.17) benign(0.125) TCGA-85-A4JC-01 2 26684636 26684636 C A OTOF Nonsense_Mutation p.E1821* 0.05 TCGA-85-A4JC-01 2 27480053 27480054 - C SLC30A3 Frame_Shift_Ins p.V249Gfs*72 0.17 TCGA-85-A4JC-01 2 32434586 32434586 G C SLC30A6 Missense_Mutation p.E321Q 0.09 deleterious(0) probably_damaging(0.996) TCGA-85-A4JC-01 2 37267582 37267582 G C HEATR5B Missense_Mutation p.S979C 0.06 deleterious(0) probably_damaging(0.982) TCGA-85-A4JC-01 2 44016845 44016845 C T DYNC2LI1 Missense_Mutation p.T102I 0.15 tolerated(0.06) probably_damaging(0.995) TCGA-85-A4JC-01 2 49247259 49247259 C G FSHR Missense_Mutation p.D89H 0.06 tolerated(0.95) benign(0.004) TCGA-85-A4JC-01 2 50318518 50318518 C G NRXN1 Missense_Mutation p.G1261R 0.11 deleterious(0) probably_damaging(1) TCGA-85-A4JC-01 2 55467269 55467269 T A MTIF2 Missense_Mutation p.Q583L 0.23 deleterious(0.05) benign(0.167) TCGA-85-A4JC-01 2 61454282 61454282 T C USP34 Silent p.A2505A 0.26 TCGA-85-A4JC-01 2 62081032 62081032 C A FAM161A Nonsense_Mutation p.E49* 0.07 TCGA-85-A4JC-01 2 68607890 68607890 C G PLEK Missense_Mutation p.D78E 0.27 tolerated(0.69) benign(0.131) TCGA-85-A4JC-01 2 69046300 69046300 A G ARHGAP25 Missense_Mutation p.H350R 0.12 deleterious(0) probably_damaging(1) TCGA-85-A4JC-01 2 70408928 70408928 C A C2orf42 Missense_Mutation p.V64F 0.15 deleterious(0) probably_damaging(0.996) TCGA-85-A4JC-01 2 74758117 74758117 T C HTRA2 Missense_Mutation p.F264S 0.18 deleterious(0) probably_damaging(0.999) TCGA-85-A4JC-01 2 79253223 79253223 C A REG3G Missense_Mutation p.L2M 0.15 tolerated(0.07) benign(0.303) TCGA-85-A4JC-01 2 89100777 89100777 G C ANKRD36BP2 RNA 0.13 TCGA-85-A4JC-01 3 107798944 107798944 C T CD47 Silent p.L98L 0.06 TCGA-85-A4JC-01 3 119327681 119327681 G A PLA1A Missense_Mutation p.A114T 0.15 deleterious(0.05) benign(0.26) TCGA-85-A4JC-01 3 120320118 120320118 C G NDUFB4 Intron 0.08 TCGA-85-A4JC-01 3 121643229 121643229 A T SLC15A2 Missense_Mutation p.Q345L 0.27 deleterious(0) probably_damaging(0.997) TCGA-85-A4JC-01 3 130463812 130463812 C T PIK3R4 Missense_Mutation p.C84Y 0.14 deleterious(0) probably_damaging(0.992) TCGA-85-A4JC-01 3 131068506 131068506 G C NEK11 Missense_Mutation p.L608F 0.25 deleterious(0) probably_damaging(1) TCGA-85-A4JC-01 3 132435743 132435743 G A NPHP3 Silent p.T227T 0.13 TCGA-85-A4JC-01 3 141497669 141497669 C T GRK7 Silent p.F181F 0.11 TCGA-85-A4JC-01 3 153998576 153998576 C G DHX36 Missense_Mutation p.D818H 0.12 tolerated(0.15) benign(0.225) TCGA-85-A4JC-01 3 155218549 155218549 G C PLCH1 Missense_Mutation p.T568S 0.09 tolerated(0.41) benign(0.025) TCGA-85-A4JC-01 3 155314075 155314075 C A PLCH1 Nonsense_Mutation p.E46* 0.15 TCGA-85-A4JC-01 3 160083831 160083831 C A IFT80 Missense_Mutation p.Q183H 0.12 deleterious(0.02) possibly_damaging(0.907) TCGA-85-A4JC-01 3 170797412 170797412 G A TNIK Missense_Mutation p.L1115F 0.11 deleterious(0) probably_damaging(0.999) TCGA-85-A4JC-01 3 179754479 179754479 A C PEX5L 5'UTR 0.19 TCGA-85-A4JC-01 3 185339615 185339615 T C SENP2 Missense_Mutation p.V483A 0.31 deleterious(0.03) benign(0.092) TCGA-85-A4JC-01 3 185434270 185434270 G C C3orf65 Missense_Mutation p.A35P 0.17 tolerated_low_confidence(0.07) possibly_damaging(0.82) TCGA-85-A4JC-01 3 196094955 196094955 C T UBXN7 Missense_Mutation p.E260K 0.14 tolerated(0.09) possibly_damaging(0.606) TCGA-85-A4JC-01 3 196096354 196096354 C T UBXN7 Missense_Mutation p.R215K 0.10 tolerated(0.15) benign(0.146) TCGA-85-A4JC-01 3 196096367 196096367 C T UBXN7 Missense_Mutation p.E211K 0.07 tolerated(0.07) benign(0.284) TCGA-85-A4JC-01 3 197639621 197639621 C G IQCG Splice_Site p.X297_splice 0.12 TCGA-85-A4JC-01 3 44541690 44541690 C T ZNF852 Silent p.G193G 0.23 TCGA-85-A4JC-01 3 88189494 88189494 C G ZNF654 Nonsense_Mutation p.S345* 0.17 TCGA-85-A4JC-01 3 97983293 97983293 C A OR5H6 Silent p.I55I 0.12 TCGA-85-A4JC-01 4 1107200 1107200 G T RNF212 Nonsense_Mutation p.S18* 0.15 TCGA-85-A4JC-01 4 120170017 120170017 G A USP53 Missense_Mutation p.D118N 0.10 tolerated(0.06) probably_damaging(1) TCGA-85-A4JC-01 4 155157715 155157715 G T DCHS2 Missense_Mutation p.H2242N 0.09 tolerated(1) benign(0.01) TCGA-85-A4JC-01 4 156135686 156135686 G A NPY2R Missense_Mutation p.E199K 0.12 tolerated(1) benign(0.001) TCGA-85-A4JC-01 4 165961854 165961854 G A TRIM60 Missense_Mutation p.M210I 0.10 tolerated(0.21) benign(0.048) TCGA-85-A4JC-01 4 177142345 177142345 A T ASB5 Missense_Mutation p.S211T 0.06 tolerated(0.3) benign(0.155) TCGA-85-A4JC-01 4 185038162 185038162 G T ENPP6 Missense_Mutation p.N234K 0.14 deleterious(0) possibly_damaging(0.767) TCGA-85-A4JC-01 4 42145882 42145882 G T BEND4 Nonsense_Mutation p.S206* 0.12 TCGA-85-A4JC-01 4 48524986 48524986 C T FRYL Missense_Mutation p.D2485N 0.16 tolerated(0.53) probably_damaging(0.996) TCGA-85-A4JC-01 4 56878120 56878120 G T CEP135 Missense_Mutation p.R924I 0.11 deleterious(0.02) probably_damaging(0.988) TCGA-85-A4JC-01 4 57179415 57179415 C A KIAA1211 Missense_Mutation p.T136N 0.17 deleterious(0) probably_damaging(0.999) TCGA-85-A4JC-01 4 57871849 57871849 A G POLR2B Missense_Mutation p.D394G 0.20 deleterious(0) probably_damaging(1) TCGA-85-A4JC-01 4 62758598 62758598 G T LPHN3 Missense_Mutation p.V501L 0.17 tolerated(0.39) benign(0.002) TCGA-85-A4JC-01 4 73013081 73013081 T C NPFFR2 Missense_Mutation p.I374T 0.18 tolerated(0.08) benign(0.309) TCGA-85-A4JC-01 4 9557878 9557878 G A MIR548I2 RNA 0.14 TCGA-85-A4JC-01 5 108680004 108680004 G A PJA2 Nonsense_Mutation p.Q630* 0.18 TCGA-85-A4JC-01 5 11082898 11082898 G T CTNND2 Missense_Mutation p.L900M 0.08 deleterious(0) probably_damaging(1) TCGA-85-A4JC-01 5 13917346 13917346 A G DNAH5 Missense_Mutation p.I332T 0.10 possibly_damaging(0.637) TCGA-85-A4JC-01 5 139725617 139725617 T A HBEGF Silent p.L33L 0.14 TCGA-85-A4JC-01 5 140719250 140719250 A T PCDHGA2 Missense_Mutation p.N238Y 0.24 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-85-A4JC-01 5 16067535 16067535 G A MARCH11 3'UTR 0.14 TCGA-85-A4JC-01 5 16565889 16565889 C A FAM134B Missense_Mutation p.W147C 0.11 deleterious(0.04) probably_damaging(0.974) TCGA-85-A4JC-01 5 17275794 17275794 C G BASP1 Missense_Mutation p.P157A 0.20 tolerated(0.3) unknown(0) TCGA-85-A4JC-01 5 176882984 176882984 C G PRR7 Silent p.L229L 0.38 TCGA-85-A4JC-01 5 19838938 19838938 C A CDH18 Missense_Mutation p.R53M 0.16 deleterious(0) probably_damaging(0.984) TCGA-85-A4JC-01 5 19838968 19838968 C T CDH18 Missense_Mutation p.G43D 0.42 tolerated(0.15) possibly_damaging(0.769) TCGA-85-A4JC-01 5 23509651 23509651 A G PRDM9 Missense_Mutation p.K48E 0.14 deleterious_low_confidence(0) benign(0.181) TCGA-85-A4JC-01 5 45267228 45267228 G T HCN1 Silent p.A582A 0.12 TCGA-85-A4JC-01 5 6372568 6372568 C A MED10 3'UTR 0.16 TCGA-85-A4JC-01 5 68425360 68425360 A T SLC30A5 Silent p.L738L 0.18 TCGA-85-A4JC-01 5 68470823 68470823 C T CCNB1 Silent p.N275N 0.17 TCGA-85-A4JC-01 5 79033891 79033891 A T CMYA5 Silent p.A3101A 0.15 TCGA-85-A4JC-01 5 9063039 9063039 T C SEMA5A Silent p.P826P 0.38 TCGA-85-A4JC-01 6 106553602 106553602 G A PRDM1 Missense_Mutation p.A523T 0.12 deleterious(0.01) probably_damaging(0.957) TCGA-85-A4JC-01 6 129419329 129419329 C G LAMA2 Missense_Mutation p.I136M 0.18 deleterious(0) probably_damaging(0.998) TCGA-85-A4JC-01 6 144416658 144416658 C G SF3B5 5'UTR 0.12 TCGA-85-A4JC-01 6 149342487 149342487 A C UST Missense_Mutation p.R269S 0.23 tolerated(0.13) benign(0.051) TCGA-85-A4JC-01 6 26273466 26273466 C G HIST1H2BI Missense_Mutation p.S88W 0.16 deleterious_low_confidence(0.01) benign(0.392) TCGA-85-A4JC-01 6 26431608 26431609 - T BTN2A3P RNA 0.18 TCGA-85-A4JC-01 6 30114875 30114875 G T TRIM40 Missense_Mutation p.M156I 0.23 tolerated(0.24) benign(0.009) TCGA-85-A4JC-01 6 30122105 30122105 C A TRIM10 Missense_Mutation p.G363W 0.28 deleterious(0) probably_damaging(1) TCGA-85-A4JC-01 6 35280449 35280449 G T DEF6 Missense_Mutation p.R236L 0.22 deleterious(0) probably_damaging(0.988) TCGA-85-A4JC-01 6 44250169 44250169 C G TCTE1 Missense_Mutation p.R325P 0.15 deleterious(0) probably_damaging(0.99) TCGA-85-A4JC-01 6 50712835 50712835 T A TFAP2D Nonsense_Mutation p.L300* 0.11 TCGA-85-A4JC-01 6 52054075 52054075 C A IL17A Silent p.V151V 0.19 TCGA-85-A4JC-01 6 90455051 90455051 C G MDN1 Silent p.A1373A 0.09 TCGA-85-A4JC-01 7 107323752 107323752 C T SLC26A4 Missense_Mutation p.R291W 0.07 deleterious(0) probably_damaging(0.99) TCGA-85-A4JC-01 7 11022044 11022044 G T PHF14 Missense_Mutation p.S53I 0.09 deleterious_low_confidence(0) unknown(0) TCGA-85-A4JC-01 7 121653216 121653216 G T PTPRZ1 Silent p.G1372G 0.07 TCGA-85-A4JC-01 7 136912694 136912694 C T PTN 3'UTR 0.10 TCGA-85-A4JC-01 7 141643701 141643701 C G CLEC5A Missense_Mutation p.G68A 0.04 tolerated(0.21) benign(0.173) TCGA-85-A4JC-01 7 14613904 14613904 T A DGKB Missense_Mutation p.N569I 0.14 tolerated(0.15) benign(0.011) TCGA-85-A4JC-01 7 44715595 44715595 G T OGDH Silent p.L351L 0.15 TCGA-85-A4JC-01 7 4823042 4823042 C T AP5Z1 Silent p.L154L 0.16 TCGA-85-A4JC-01 7 72985191 72985191 C T TBL2 Silent p.A330A 0.21 TCGA-85-A4JC-01 7 7529081 7529081 C G COL28A1 Missense_Mutation p.R368T 0.25 tolerated(0.23) benign(0.352) TCGA-85-A4JC-01 7 77408331 77408331 C T RSBN1L Missense_Mutation p.A796V 0.07 deleterious_low_confidence(0) benign(0.164) TCGA-85-A4JC-01 7 80300457 80300457 T G CD36 Missense_Mutation p.L328R 0.18 deleterious(0) probably_damaging(0.999) TCGA-85-A4JC-01 7 82451767 82451767 G A PCLO Intron 0.13 TCGA-85-A4JC-01 7 86394373 86394373 G T GRM3 5'UTR 0.18 TCGA-85-A4JC-01 7 94991779 94991779 C T PON3 Silent p.V267V 0.17 TCGA-85-A4JC-01 7 97991717 97991717 G A BAIAP2L1 Silent p.L27L 0.15 TCGA-85-A4JC-01 7 98445848 98445848 G A TMEM130 Missense_Mutation p.S380F 0.14 deleterious(0) probably_damaging(0.999) TCGA-85-A4JC-01 7 99956625 99956625 G T PILRB Missense_Mutation p.R126L 0.11 deleterious(0) probably_damaging(0.997) TCGA-85-A4JC-01 8 105161055 105161055 G T RIMS2 Intron 0.17 TCGA-85-A4JC-01 8 105521275 105521275 C A LRP12 Missense_Mutation p.R55L 0.07 tolerated(0.16) benign(0.134) TCGA-85-A4JC-01 8 11832085 11832085 T C DEFB136 Silent p.L8L 0.17 TCGA-85-A4JC-01 8 126061416 126061416 C G KIAA0196 Missense_Mutation p.L737F 0.16 tolerated(0.07) probably_damaging(0.997) TCGA-85-A4JC-01 8 139609182 139609182 C A COL22A1 Missense_Mutation p.R1466L 0.09 unknown(0) TCGA-85-A4JC-01 8 144946756 144946756 G A EPPK1 Silent p.P222P 0.12 TCGA-85-A4JC-01 8 145695028 145695028 G T KIFC2 Nonsense_Mutation p.E460* 0.07 TCGA-85-A4JC-01 8 1728489 1728489 T G CLN8 Missense_Mutation p.V206G 0.15 deleterious(0) possibly_damaging(0.66) TCGA-85-A4JC-01 8 39466608 39466608 G T ADAM18 Missense_Mutation p.G79V 0.17 deleterious(0) probably_damaging(0.959) TCGA-85-A4JC-01 8 67086749 67086749 C T TRIM55 Missense_Mutation p.P523L 0.04 tolerated_low_confidence(0.28) benign(0) TCGA-85-A4JC-01 8 68658314 68658314 A T CPA6 Silent p.L17L 0.09 TCGA-85-A4JC-01 8 81431635 81431635 C T ZBTB10 Missense_Mutation p.R830W 0.10 deleterious(0) probably_damaging(0.982) TCGA-85-A4JC-01 8 97342505 97342505 A T PTDSS1 Missense_Mutation p.E413V 0.18 tolerated(0.12) benign(0.007) TCGA-85-A4JC-01 9 113234501 113234501 G C SVEP1 Nonsense_Mutation p.S901* 0.07 TCGA-85-A4JC-01 9 117360138 117360138 A T ATP6V1G1 3'UTR 0.27 TCGA-85-A4JC-01 9 123917066 123917066 C G CNTRL Missense_Mutation p.H1414D 0.18 benign(0.394) TCGA-85-A4JC-01 9 130430401 130430401 G A STXBP1 Silent p.V279V 0.27 TCGA-85-A4JC-01 9 5055788 5055788 G T JAK2 Silent p.L352L 0.17 TCGA-85-A4JC-01 9 84608923 84608923 A G SPATA31D1 Missense_Mutation p.N1180D 0.23 tolerated(0.42) benign(0.001) TCGA-85-A4JC-01 X 110494847 110494847 C G CAPN6 Missense_Mutation p.E275Q 0.31 deleterious(0.03) probably_damaging(0.913) TCGA-85-A4JC-01 X 127186125 127186125 A G ACTRT1 Missense_Mutation p.C21R 0.24 deleterious(0) probably_damaging(0.951) TCGA-85-A4JC-01 X 128947678 128947678 C A ZDHHC9 Nonsense_Mutation p.E217* 0.25 TCGA-85-A4JC-01 X 153041470 153041470 C T PLXNB3 Silent p.D1533D 0.27 TCGA-85-A4JC-01 X 153421809 153421809 C G OPN1LW Missense_Mutation p.A262G 0.25 deleterious(0.01) probably_damaging(0.958) TCGA-85-A4JC-01 X 2852987 2852987 G C ARSE Silent p.L552L 0.23 TCGA-85-A4JC-01 X 30577794 30577794 T C CXorf21 Missense_Mutation p.M227V 0.34 tolerated(0.07) probably_damaging(0.917) TCGA-85-A4JC-01 X 35820511 35820511 G C MAGEB16 Missense_Mutation p.Q66H 0.28 deleterious(0.02) probably_damaging(0.986) TCGA-85-A4JC-01 X 52825221 52825221 G T SPANXN5 3'UTR 0.26 TCGA-85-A4JC-01 X 53600852 53600852 T G HUWE1 Missense_Mutation p.Q2057P 0.24 benign(0.326) TCGA-85-A4PA-01 11 71810229 71810229 T A LAMTOR1 Missense_Mutation p.N39I 0.05 tolerated(0.14) benign(0.008) TCGA-85-A4PA-01 12 133277875 133277875 G T PXMP2 Missense_Mutation p.G147C 0.04 deleterious(0.02) probably_damaging(0.935) TCGA-85-A4PA-01 12 9220394 9220394 A G A2M 3'UTR 0.16 TCGA-85-A4PA-01 17 79650872 79650872 T C ARL16 5'UTR 0.16 TCGA-85-A4PA-01 19 36245214 36245214 G A LIN37 Missense_Mutation p.R218H 0.07 deleterious(0) probably_damaging(0.996) TCGA-85-A4PA-01 19 42584467 42584467 G A ZNF574 Missense_Mutation p.R570H 0.06 tolerated(0.13) possibly_damaging(0.84) TCGA-85-A4PA-01 19 55258823 55258823 C A KIR2DL3 Missense_Mutation p.P234Q 0.06 deleterious(0.01) possibly_damaging(0.649) TCGA-85-A4PA-01 19 59060921 59060921 G A TRIM28 Missense_Mutation p.R629H 0.05 tolerated(0.06) probably_damaging(0.931) TCGA-85-A4PA-01 1 117297416 117297416 A G CD2 Silent p.K75K 0.07 TCGA-85-A4PA-01 1 6635003 6635003 G A TAS1R1 Missense_Mutation p.V271M 0.06 deleterious(0.01) probably_damaging(0.954) TCGA-85-A4PA-01 20 60910135 60910135 G A LAMA5 Silent p.C808C 0.08 TCGA-85-A4PA-01 22 24583366 24583366 C G SUSD2 Silent p.R613R 0.08 TCGA-85-A4PA-01 22 41735999 41735999 C T ZC3H7B Silent p.A332A 0.09 TCGA-85-A4QQ-01 10 115610215 115610215 G C DCLRE1A Missense_Mutation p.Q217E 0.17 tolerated(0.23) benign(0.004) TCGA-85-A4QQ-01 10 125447583 125447583 G A GPR26 Silent p.E307E 0.17 TCGA-85-A4QQ-01 10 134664707 134664707 G T TTC40 Missense_Mutation p.H1893N 0.27 tolerated(0.39) benign(0.013) TCGA-85-A4QQ-01 10 26994234 26994234 G A PDSS1 Missense_Mutation p.D83N 0.30 tolerated(0.49) benign(0.008) TCGA-85-A4QQ-01 10 28196616 28196616 G C ARMC4 Silent p.L862L 0.29 TCGA-85-A4QQ-01 10 37506800 37506800 G A ANKRD30A Silent p.L1031L 0.32 TCGA-85-A4QQ-01 10 49450363 49450363 G C FRMPD2 Missense_Mutation p.I136M 0.39 deleterious(0.01) possibly_damaging(0.595) TCGA-85-A4QQ-01 10 62023673 62023673 G A ANK3 Missense_Mutation p.H207Y 0.10 probably_damaging(0.997) TCGA-85-A4QQ-01 10 63850861 63850861 C G ARID5B Missense_Mutation p.L547V 0.32 tolerated(0.63) benign(0) TCGA-85-A4QQ-01 10 70209810 70209810 G C DNA2 Nonsense_Mutation p.S391* 0.25 TCGA-85-A4QQ-01 10 81317048 81317048 C G SFTPA2 Missense_Mutation p.E222Q 0.19 deleterious(0.02) probably_damaging(1) TCGA-85-A4QQ-01 10 81317266 81317266 T A SFTPA2 Missense_Mutation p.D149V 0.05 tolerated(0.2) benign(0.362) TCGA-85-A4QQ-01 10 94822674 94822674 G A CYP26C1 Silent p.T209T 0.17 TCGA-85-A4QQ-01 10 96796869 96796869 G C CYP2C8 3'UTR 0.66 TCGA-85-A4QQ-01 10 99623960 99623960 G C GOLGA7B Missense_Mutation p.Q109H 0.31 deleterious(0) probably_damaging(0.996) TCGA-85-A4QQ-01 11 101347261 101347261 C T TRPC6 Missense_Mutation p.M505I 0.33 deleterious(0.02) benign(0.081) TCGA-85-A4QQ-01 11 108098535 108098535 A G ATM Silent p.R35R 0.26 TCGA-85-A4QQ-01 11 118076603 118076603 G A AMICA1 Silent p.R176R 0.33 TCGA-85-A4QQ-01 11 123813632 123813632 A G OR6T1 Missense_Mutation p.L305S 0.19 deleterious(0) benign(0.288) TCGA-85-A4QQ-01 11 124189925 124189925 G T OR8D2 Missense_Mutation p.P57T 0.21 tolerated(1) benign(0) TCGA-85-A4QQ-01 11 125482950 125482950 G T STT3A Missense_Mutation p.V478L 0.26 deleterious(0) possibly_damaging(0.718) TCGA-85-A4QQ-01 11 1268444 1268444 C A MUC5B Missense_Mutation p.P3445H 0.45 unknown(0) TCGA-85-A4QQ-01 11 15260536 15260536 G C INSC Missense_Mutation p.E484Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-85-A4QQ-01 11 17757762 17757762 C T KCNC1 Silent p.Y71Y 0.23 TCGA-85-A4QQ-01 11 32414274 32414274 T C WT1 Missense_Mutation p.K426R 0.38 deleterious_low_confidence(0.03) possibly_damaging(0.853) TCGA-85-A4QQ-01 11 55111634 55111634 C T OR4A16 Missense_Mutation p.P320S 0.12 tolerated_low_confidence(0.89) benign(0) TCGA-85-A4QQ-01 11 55433135 55433135 C T OR4C6 Missense_Mutation p.P165S 0.22 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-85-A4QQ-01 11 55927170 55927170 G A OR8K5 Silent p.I208I 0.28 TCGA-85-A4QQ-01 11 60182976 60182976 C G MS4A14 Missense_Mutation p.Q212E 0.23 tolerated(0.07) benign(0.152) TCGA-85-A4QQ-01 11 63525643 63525643 C T RTN3 Silent p.L1023L 0.40 TCGA-85-A4QQ-01 11 64884075 64884075 C G ZNHIT2 Missense_Mutation p.E351Q 0.27 tolerated(0.14) probably_damaging(0.979) TCGA-85-A4QQ-01 11 65349868 65349868 G A EHBP1L1 Silent p.E575E 0.22 TCGA-85-A4QQ-01 11 66360198 66360198 C T CCDC87 Missense_Mutation p.E97K 0.12 deleterious(0.01) possibly_damaging(0.537) TCGA-85-A4QQ-01 11 67351942 67351942 C T GSTP1 Silent p.C15C 0.14 TCGA-85-A4QQ-01 11 67765909 67765909 C A UNC93B1 Missense_Mutation p.C234F 0.06 tolerated(0.87) benign(0.023) TCGA-85-A4QQ-01 11 72004656 72004656 C G CLPB Missense_Mutation p.E627Q 0.20 tolerated(0.38) probably_damaging(0.915) TCGA-85-A4QQ-01 11 89768542 89768542 T C TRIM49C Missense_Mutation p.C55R 0.23 deleterious(0) probably_damaging(0.96) TCGA-85-A4QQ-01 11 92088277 92088277 A G FAT3 Missense_Mutation p.Y1000C 0.36 probably_damaging(0.981) TCGA-85-A4QQ-01 11 95571356 95571356 C G MTMR2 Missense_Mutation p.E499Q 0.23 deleterious(0.04) benign(0.037) TCGA-85-A4QQ-01 12 100042149 100042149 C A FAM71C Missense_Mutation p.A66D 0.28 deleterious(0.01) possibly_damaging(0.573) TCGA-85-A4QQ-01 12 1034671 1034671 C A RAD52 Missense_Mutation p.G163V 0.28 deleterious(0) probably_damaging(0.998) TCGA-85-A4QQ-01 12 104071234 104071234 G C STAB2 Missense_Mutation p.E884Q 0.06 tolerated(0.18) possibly_damaging(0.886) TCGA-85-A4QQ-01 12 10586455 10586455 C A KLRC2 Nonsense_Mutation p.E140* 0.25 TCGA-85-A4QQ-01 12 109684142 109684142 G - ACACB Frame_Shift_Del p.G1821Afs*44 0.22 TCGA-85-A4QQ-01 12 110352427 110352427 G A TCHP Missense_Mutation p.A439T 0.27 deleterious(0.05) possibly_damaging(0.649) TCGA-85-A4QQ-01 12 113830781 113830781 C G SDS Missense_Mutation p.E318Q 0.27 tolerated(0.42) benign(0.002) TCGA-85-A4QQ-01 12 11546702 11546702 G C PRB2 Missense_Mutation p.Q104E 0.18 tolerated(0.41) unknown(0) TCGA-85-A4QQ-01 12 21051436 21051436 T C SLCO1B3 Splice_Site p.X583_splice 0.27 TCGA-85-A4QQ-01 12 21353532 21353532 G T SLCO1B1 Missense_Mutation p.G354V 0.17 deleterious(0.03) possibly_damaging(0.901) TCGA-85-A4QQ-01 12 21962851 21962851 C T ABCC9 Missense_Mutation p.R1417K 0.28 tolerated(0.35) benign(0.004) TCGA-85-A4QQ-01 12 39947886 39947886 C A ABCD2 Missense_Mutation p.R684L 0.19 tolerated(0.17) benign(0.246) TCGA-85-A4QQ-01 12 50042909 50042909 C T FMNL3 Missense_Mutation p.M806I 0.18 tolerated(0.4) benign(0.007) TCGA-85-A4QQ-01 12 56755346 56755346 C T APOF Missense_Mutation p.R215Q 0.31 tolerated(1) benign(0.013) TCGA-85-A4QQ-01 12 57909810 57909810 C T MARS Intron 0.28 TCGA-85-A4QQ-01 12 69145899 69145899 G T SLC35E3 Missense_Mutation p.V201F 0.21 tolerated(0.8) benign(0.005) TCGA-85-A4QQ-01 12 7882181 7882181 G T CLEC4C 3'UTR 0.17 TCGA-85-A4QQ-01 12 95604137 95604137 T C FGD6 Missense_Mutation p.Y308C 0.39 tolerated_low_confidence(0.19) benign(0.001) TCGA-85-A4QQ-01 13 111147792 111147792 G C COL4A2 Missense_Mutation p.Q1246H 0.22 benign(0.216) TCGA-85-A4QQ-01 13 115091853 115091853 A G CHAMP1 3'UTR 0.21 TCGA-85-A4QQ-01 13 20220640 20220640 G C MPHOSPH8 Missense_Mutation p.E143Q 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.881) TCGA-85-A4QQ-01 13 23908956 23908956 G A SACS Missense_Mutation p.S3020F 0.07 benign(0.045) TCGA-85-A4QQ-01 13 26788407 26788407 G C RNF6 Missense_Mutation p.Q538E 0.14 tolerated(0.91) benign(0.001) TCGA-85-A4QQ-01 13 28841436 28841436 G A PAN3 Splice_Site p.X564_splice 0.20 TCGA-85-A4QQ-01 13 28886162 28886162 G A FLT1 Silent p.L1154L 0.18 TCGA-85-A4QQ-01 13 33111050 33111050 T G N4BP2L2 Intron 0.23 TCGA-85-A4QQ-01 13 38151912 38151912 T A POSTN Missense_Mutation p.K662N 0.09 deleterious(0.03) possibly_damaging(0.844) TCGA-85-A4QQ-01 13 77835401 77835401 G A MYCBP2 Missense_Mutation p.S548L 0.30 probably_damaging(0.942) TCGA-85-A4QQ-01 14 100406517 100406517 T C EML1 3'UTR 0.27 TCGA-85-A4QQ-01 14 106963214 106963214 A G IGHV1-45 Missense_Mutation p.L23P 0.16 deleterious(0.01) possibly_damaging(0.798) TCGA-85-A4QQ-01 14 21108876 21108876 G A OR6S1 Silent p.L325L 0.19 TCGA-85-A4QQ-01 14 22471638 22471638 G A TRAV18 Missense_Mutation p.D21N 0.31 tolerated(0.08) probably_damaging(0.988) TCGA-85-A4QQ-01 14 26949349 26949349 C A NOVA1 Missense_Mutation p.G94V 0.18 deleterious(0) unknown(0) TCGA-85-A4QQ-01 14 29238024 29238024 T A FOXG1 3'UTR 0.28 TCGA-85-A4QQ-01 14 35245236 35245236 G C BAZ1A Missense_Mutation p.L908V 0.19 deleterious(0) possibly_damaging(0.899) TCGA-85-A4QQ-01 14 68274304 68274304 C G ZFYVE26 Missense_Mutation p.G233R 0.30 tolerated(0.22) benign(0.03) TCGA-85-A4QQ-01 14 77872308 77872308 G T NOXRED1 Missense_Mutation p.Q285K 0.19 tolerated(0.69) benign(0.03) TCGA-85-A4QQ-01 14 86089184 86089184 C T FLRT2 Silent p.L442L 0.29 TCGA-85-A4QQ-01 15 102358613 102358613 C G OR4F15 Nonsense_Mutation p.S75* 0.06 TCGA-85-A4QQ-01 15 25481306 25481306 T A SNORD115-36 RNA 0.38 TCGA-85-A4QQ-01 15 28358280 28358280 G C HERC2 Silent p.V4723V 0.29 TCGA-85-A4QQ-01 15 60741206 60741206 C G NARG2 Missense_Mutation p.E654Q 0.31 tolerated(0.11) probably_damaging(0.998) TCGA-85-A4QQ-01 15 68657129 68657129 G T ITGA11 Silent p.V91V 0.57 TCGA-85-A4QQ-01 15 77406911 77406911 C T PEAK1 Missense_Mutation p.D1610N 0.14 deleterious(0) possibly_damaging(0.87) TCGA-85-A4QQ-01 15 88420127 88420127 G T NTRK3 3'UTR 0.30 TCGA-85-A4QQ-01 16 14958483 14958483 G A NOMO1 Silent p.L479L 0.28 TCGA-85-A4QQ-01 16 1575324 1575324 G A IFT140 Silent p.Y924Y 0.10 TCGA-85-A4QQ-01 16 20476947 20476947 G T ACSM2A Missense_Mutation p.V96F 0.28 deleterious(0.03) probably_damaging(1) TCGA-85-A4QQ-01 16 20554554 20554554 G T ACSM2B Silent p.R438R 0.23 TCGA-85-A4QQ-01 16 24963650 24963650 T A ARHGAP17 Missense_Mutation p.M336L 0.24 tolerated(0.18) benign(0.22) TCGA-85-A4QQ-01 16 27472603 27472603 C G GTF3C1 3'UTR 0.38 TCGA-85-A4QQ-01 16 27549662 27549662 C G GTF3C1 Silent p.L149L 0.19 TCGA-85-A4QQ-01 16 27802662 27802662 G A GSG1L 3'UTR 0.20 TCGA-85-A4QQ-01 16 30724543 30724565 CAATGCCTTTCATGTGTGTATCA - SRCAP Frame_Shift_Del p.N716Ifs*24 0.23 TCGA-85-A4QQ-01 16 570537 570537 C T RAB11FIP3 Missense_Mutation p.L699F 0.21 deleterious(0) possibly_damaging(0.889) TCGA-85-A4QQ-01 16 87445539 87445539 A C ZCCHC14 Missense_Mutation p.C793G 0.23 tolerated(0.11) unknown(0) TCGA-85-A4QQ-01 16 9943808 9943808 C A GRIN2A Missense_Mutation p.W378L 0.23 deleterious(0.04) benign(0.195) TCGA-85-A4QQ-01 17 10265707 10265707 G C MYH13 Silent p.L106L 0.46 TCGA-85-A4QQ-01 17 10419767 10419767 C - MYH1 Frame_Shift_Del p.E65Kfs*6 0.37 TCGA-85-A4QQ-01 17 16456279 16456279 C G ZNF287 Missense_Mutation p.E393Q 0.22 deleterious(0.01) benign(0.326) TCGA-85-A4QQ-01 17 17772834 17772834 G A TOM1L2 Intron 0.15 TCGA-85-A4QQ-01 17 26856180 26856180 G T FOXN1 Missense_Mutation p.M256I 0.20 tolerated(1) benign(0) TCGA-85-A4QQ-01 17 26944312 26944312 C G KIAA0100 Missense_Mutation p.E1950Q 0.17 deleterious(0.02) probably_damaging(0.978) TCGA-85-A4QQ-01 17 26960076 26960076 C A KIAA0100 Missense_Mutation p.R1230L 0.13 tolerated(0.35) benign(0.185) TCGA-85-A4QQ-01 17 29631751 29631751 C T EVI2B Missense_Mutation p.E293K 0.33 deleterious(0.02) possibly_damaging(0.801) TCGA-85-A4QQ-01 17 33330086 33330086 G A LIG3 Intron 0.23 TCGA-85-A4QQ-01 17 34171346 34171346 C T TAF15 Missense_Mutation p.P384L 0.16 deleterious_low_confidence(0) possibly_damaging(0.882) TCGA-85-A4QQ-01 17 34266295 34266295 G A LYZL6 Silent p.I22I 0.24 TCGA-85-A4QQ-01 17 40344960 40344960 C T GHDC Silent p.P117P 0.31 TCGA-85-A4QQ-01 17 40997230 40997230 A C AOC2 Missense_Mutation p.N196T 0.20 tolerated(0.43) benign(0.03) TCGA-85-A4QQ-01 17 42430078 42430078 G A GRN Missense_Mutation p.C565Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-85-A4QQ-01 17 45895693 45895693 C T OSBPL7 Silent p.P180P 0.16 TCGA-85-A4QQ-01 17 47123249 47123249 C G IGF2BP1 Intron 0.13 TCGA-85-A4QQ-01 17 57043252 57043252 G A PPM1E Missense_Mutation p.E261K 0.19 tolerated(0.2) benign(0.112) TCGA-85-A4QQ-01 17 60753841 60753841 T C MRC2 Missense_Mutation p.W595R 0.22 deleterious(0) probably_damaging(0.999) TCGA-85-A4QQ-01 17 62533738 62533738 G C CEP95 Missense_Mutation p.K769N 0.25 deleterious(0) probably_damaging(0.999) TCGA-85-A4QQ-01 17 67538013 67538013 G A MAP2K6 3'UTR 0.47 TCGA-85-A4QQ-01 17 7577120 7577120 C A TP53 Missense_Mutation p.R273L 0.50 deleterious(0) probably_damaging(0.993) TCGA-85-A4QQ-01 17 80022906 80022906 C G DUS1L Missense_Mutation p.W10C 0.32 deleterious(0) probably_damaging(0.984) TCGA-85-A4QQ-01 17 80136465 80136465 T A CCDC57 Missense_Mutation p.Q464L 0.30 deleterious(0) possibly_damaging(0.762) TCGA-85-A4QQ-01 18 25543367 25543367 C A CDH2 Missense_Mutation p.R823L 0.32 deleterious(0) probably_damaging(1) TCGA-85-A4QQ-01 18 31325098 31325098 A T ASXL3 Missense_Mutation p.K1762N 0.32 probably_damaging(0.999) TCGA-85-A4QQ-01 18 5419847 5419847 T C EPB41L3 Missense_Mutation p.K457E 0.40 deleterious(0.02) probably_damaging(0.978) TCGA-85-A4QQ-01 19 14694173 14694173 C A CLEC17A Silent p.T16T 0.32 TCGA-85-A4QQ-01 19 17008700 17008700 C G CPAMD8 Missense_Mutation p.A1699P 0.42 tolerated(0.12) probably_damaging(0.974) TCGA-85-A4QQ-01 19 18727877 18727877 G A TMEM59L Missense_Mutation p.R210Q 0.06 tolerated(0.34) benign(0.357) TCGA-85-A4QQ-01 19 21281704 21281704 G A ZNF714 Missense_Mutation p.D44N 0.21 tolerated(0.07) benign(0.275) TCGA-85-A4QQ-01 19 2476148 2476148 C T GADD45B 5'UTR 0.35 TCGA-85-A4QQ-01 19 36252958 36252958 G A C19orf55 Missense_Mutation p.R117Q 0.50 deleterious(0.02) probably_damaging(0.992) TCGA-85-A4QQ-01 19 37618731 37618731 G C ZNF420 Missense_Mutation p.E280Q 0.26 deleterious(0.04) possibly_damaging(0.728) TCGA-85-A4QQ-01 19 41762411 41762411 C G AXL Missense_Mutation p.I697M 0.32 deleterious(0) probably_damaging(0.996) TCGA-85-A4QQ-01 19 4352939 4352939 G T MPND Nonsense_Mutation p.E193* 0.32 TCGA-85-A4QQ-01 19 4538453 4538453 G A LRG1 Silent p.P181P 0.26 TCGA-85-A4QQ-01 19 45988878 45988878 G A RTN2 3'UTR 0.24 TCGA-85-A4QQ-01 19 48878930 48878930 C T SYNGR4 Missense_Mutation p.S131L 0.09 deleterious(0) probably_damaging(0.924) TCGA-85-A4QQ-01 19 49535250 49535250 C G CGB2 5'UTR 0.29 TCGA-85-A4QQ-01 19 49535273 49535273 C T CGB2 5'UTR 0.23 TCGA-85-A4QQ-01 19 51874939 51874939 C A NKG7 3'UTR 0.30 TCGA-85-A4QQ-01 19 52633837 52633837 C T ZNF616 5'UTR 0.23 TCGA-85-A4QQ-01 19 53117745 53117745 G C ZNF83 Missense_Mutation p.L25V 0.26 deleterious(0.01) benign(0.287) TCGA-85-A4QQ-01 19 53117880 53117880 C T ZNF83 5'UTR 0.27 TCGA-85-A4QQ-01 19 53269600 53269600 T A ZNF600 Missense_Mutation p.Y470F 0.35 tolerated(0.07) probably_damaging(0.993) TCGA-85-A4QQ-01 19 55739624 55739624 T A TMEM86B Missense_Mutation p.Q78L 0.14 tolerated(0.22) benign(0.211) TCGA-85-A4QQ-01 19 57089306 57089306 T A ZNF470 Missense_Mutation p.H503Q 0.19 deleterious(0) probably_damaging(0.984) TCGA-85-A4QQ-01 19 57665675 57665675 G C DUXA 3'UTR 0.16 TCGA-85-A4QQ-01 19 58864520 58864520 C T A1BG Silent p.L38L 0.25 TCGA-85-A4QQ-01 19 6591102 6591102 C T CD70 5'UTR 0.32 TCGA-85-A4QQ-01 19 9226089 9226089 G C OR7G1 Silent p.V117V 0.25 TCGA-85-A4QQ-01 1 101362185 101362185 C G SLC30A7 Missense_Mutation p.S47C 0.35 tolerated(0.06) probably_damaging(0.992) TCGA-85-A4QQ-01 1 102462469 102462469 A G OLFM3 5'UTR 0.23 TCGA-85-A4QQ-01 1 110257865 110257865 G A GSTM5 Intron 0.24 TCGA-85-A4QQ-01 1 114516064 114516064 C - HIPK1 Frame_Shift_Del p.R1189Efs*11 0.26 TCGA-85-A4QQ-01 1 115469147 115469147 C T SYCP1 Missense_Mutation p.T630I 0.32 deleterious(0.03) benign(0.009) TCGA-85-A4QQ-01 1 11561851 11561851 C G PTCHD2 Missense_Mutation p.Q268E 0.30 tolerated(0.07) probably_damaging(0.977) TCGA-85-A4QQ-01 1 11985466 11985466 G C KIAA2013 Missense_Mutation p.P277A 0.16 tolerated(0.77) probably_damaging(0.992) TCGA-85-A4QQ-01 1 120437559 120437559 T G ADAM30 Silent p.A467A 0.16 TCGA-85-A4QQ-01 1 151266903 151266903 C T PI4KB Silent p.L722L 0.28 TCGA-85-A4QQ-01 1 151378927 151378927 G A POGZ Missense_Mutation p.R862C 0.41 tolerated(0.05) benign(0.208) TCGA-85-A4QQ-01 1 152129362 152129362 A G RPTN Silent p.F71F 0.28 TCGA-85-A4QQ-01 1 153012501 153012501 G A SPRR2D 3'UTR 0.24 TCGA-85-A4QQ-01 1 153591369 153591369 C G S100A13 3'UTR 0.26 TCGA-85-A4QQ-01 1 156813002 156813002 C T INSRR Missense_Mutation p.V974M 0.28 deleterious(0) probably_damaging(0.999) TCGA-85-A4QQ-01 1 158747152 158747152 T C OR6N2 Missense_Mutation p.I92V 0.26 deleterious(0) probably_damaging(0.995) TCGA-85-A4QQ-01 1 160267198 160267198 T A COPA Missense_Mutation p.Y742F 0.26 tolerated(1) benign(0.001) TCGA-85-A4QQ-01 1 161130276 161130276 G C USP21 5'UTR 0.29 TCGA-85-A4QQ-01 1 161168056 161168056 C G ADAMTS4 Missense_Mutation p.G121A 0.27 tolerated(0.44) benign(0.122) TCGA-85-A4QQ-01 1 162346646 162346646 G C C1orf111 5'UTR 0.27 TCGA-85-A4QQ-01 1 167745314 167745314 G A MPZL1 Missense_Mutation p.E207K 0.14 deleterious(0) benign(0.062) TCGA-85-A4QQ-01 1 170699473 170699473 C A PRRX1 Intron 0.23 TCGA-85-A4QQ-01 1 175049510 175049510 T A TNN Silent p.R332R 0.30 TCGA-85-A4QQ-01 1 175355387 175355387 C T TNR Missense_Mutation p.A520T 0.25 deleterious(0.01) possibly_damaging(0.878) TCGA-85-A4QQ-01 1 179437669 179437669 A G AXDND1 Silent p.E630E 0.06 TCGA-85-A4QQ-01 1 179869269 179869269 A G TOR1AIP1 Missense_Mutation p.S207G 0.23 tolerated_low_confidence(0.13) benign(0.01) TCGA-85-A4QQ-01 1 179886697 179886697 G A TOR1AIP1 Missense_Mutation p.E359K 0.18 tolerated(0.08) probably_damaging(0.997) TCGA-85-A4QQ-01 1 180165854 180165854 G C QSOX1 Missense_Mutation p.L642F 0.26 tolerated(0.1) benign(0.188) TCGA-85-A4QQ-01 1 186099713 186099713 G T HMCN1 Nonsense_Mutation p.E4372* 0.23 TCGA-85-A4QQ-01 1 19412745 19412745 C G UBR4 Missense_Mutation p.E4903Q 0.33 probably_damaging(0.982) TCGA-85-A4QQ-01 1 20141462 20141462 C G RNF186 Missense_Mutation p.E45Q 0.25 tolerated(0.06) probably_damaging(0.981) TCGA-85-A4QQ-01 1 209789963 209789963 C G LAMB3 Missense_Mutation p.E1079Q 0.27 tolerated(0.11) benign(0.126) TCGA-85-A4QQ-01 1 212911882 212911882 C T NSL1 Silent p.Q238Q 0.26 TCGA-85-A4QQ-01 1 22084194 22084194 G C USP48 Missense_Mutation p.H73D 0.30 tolerated(0.07) benign(0.032) TCGA-85-A4QQ-01 1 225147993 225147993 A G DNAH14 Missense_Mutation p.Y119C 0.34 deleterious(0.02) benign(0.181) TCGA-85-A4QQ-01 1 236746095 236746095 T A HEATR1 Missense_Mutation p.M835L 0.30 tolerated(1) benign(0) TCGA-85-A4QQ-01 1 23693553 23693553 C A ZNF436 Nonsense_Mutation p.G48* 0.30 TCGA-85-A4QQ-01 1 24465083 24465083 G A IL22RA1 Silent p.I55I 0.24 TCGA-85-A4QQ-01 1 247587192 247587192 G T NLRP3 Missense_Mutation p.Q149H 0.28 tolerated(0.18) benign(0.006) TCGA-85-A4QQ-01 1 27176868 27176869 TC - ZDHHC18 Frame_Shift_Del p.S243Pfs*67 0.25 TCGA-85-A4QQ-01 1 31656807 31656807 C G NKAIN1 Missense_Mutation p.E110Q 0.32 deleterious(0.02) probably_damaging(0.996) TCGA-85-A4QQ-01 1 38272559 38272559 G A YRDC Silent p.L198L 0.34 TCGA-85-A4QQ-01 1 51702279 51702279 C T RNF11 5'UTR 0.33 TCGA-85-A4QQ-01 1 52256249 52256249 C T NRD1 Missense_Mutation p.E1110K 0.11 deleterious(0.02) possibly_damaging(0.831) TCGA-85-A4QQ-01 1 62189388 62189388 G A TM2D1 Missense_Mutation p.H141Y 0.38 tolerated(0.36) benign(0.002) TCGA-85-A4QQ-01 1 62713235 62713235 G A KANK4 Missense_Mutation p.S931L 0.11 deleterious(0) benign(0.045) TCGA-85-A4QQ-01 1 65273019 65273019 G C RAVER2 Silent p.T501T 0.12 TCGA-85-A4QQ-01 1 6534163 6534163 C G PLEKHG5 Silent p.L246L 0.27 TCGA-85-A4QQ-01 1 67109382 67109382 G T SGIP1 Missense_Mutation p.A147S 0.22 tolerated(0.2) probably_damaging(0.984) TCGA-85-A4QQ-01 1 76347024 76347024 A G MSH4 Silent p.S625S 0.31 TCGA-85-A4QQ-01 1 98039421 98039421 C G DPYD Missense_Mutation p.E412Q 0.31 tolerated(0.07) benign(0.174) TCGA-85-A4QQ-01 20 12989888 12989888 C T SPTLC3 5'UTR 0.38 TCGA-85-A4QQ-01 20 30418918 30418918 G A MYLK2 Nonsense_Mutation p.W466* 0.27 TCGA-85-A4QQ-01 20 30585384 30585384 G A XKR7 3'UTR 0.30 TCGA-85-A4QQ-01 20 34288774 34288774 G C ROMO1 Missense_Mutation p.Q62H 0.18 deleterious(0.04) possibly_damaging(0.507) TCGA-85-A4QQ-01 20 37154652 37154652 G T RALGAPB Nonsense_Mutation p.E673* 0.24 TCGA-85-A4QQ-01 20 43940261 43940261 C T RBPJL Missense_Mutation p.S97L 0.47 tolerated(0.67) benign(0.054) TCGA-85-A4QQ-01 20 47628552 47628552 C T ARFGEF2 Silent p.F1283F 0.08 TCGA-85-A4QQ-01 20 47882742 47882742 T C ZNFX1 Silent p.Q644Q 0.38 TCGA-85-A4QQ-01 20 58416548 58416548 G C PHACTR3 Missense_Mutation p.R515S 0.21 deleterious(0) probably_damaging(0.997) TCGA-85-A4QQ-01 20 58559777 58559777 C G CDH26 Missense_Mutation p.Q209E 0.26 tolerated(0.06) possibly_damaging(0.624) TCGA-85-A4QQ-01 20 62321162 62321162 C T RTEL1 Silent p.I719I 0.26 TCGA-85-A4QQ-01 21 11038747 11038747 C A BAGE2 RNA 0.10 TCGA-85-A4QQ-01 21 27097579 27097579 C A ATP5J Missense_Mutation p.G91C 0.12 deleterious(0) probably_damaging(0.995) TCGA-85-A4QQ-01 21 34067580 34067580 C A SYNJ1 Missense_Mutation p.L203F 0.27 deleterious(0.03) probably_damaging(0.927) TCGA-85-A4QQ-01 21 34923735 34923735 C G SON Missense_Mutation p.S733C 0.25 possibly_damaging(0.7) TCGA-85-A4QQ-01 21 34926902 34926902 G T SON Missense_Mutation p.D1789Y 0.30 possibly_damaging(0.861) TCGA-85-A4QQ-01 21 38852985 38852985 G A DYRK1A Missense_Mutation p.D125N 0.14 tolerated(0.05) benign(0.142) TCGA-85-A4QQ-01 21 44188301 44188301 A T PDE9A Nonsense_Mutation p.K454* 0.53 TCGA-85-A4QQ-01 22 20101006 20101006 C T TRMT2A Missense_Mutation p.E461K 0.20 deleterious(0) probably_damaging(0.999) TCGA-85-A4QQ-01 22 23487521 23487521 C A RAB36 5'UTR 0.25 TCGA-85-A4QQ-01 22 31333904 31333904 G A MORC2 Missense_Mutation p.P361S 0.17 deleterious(0) probably_damaging(0.937) TCGA-85-A4QQ-01 2 106498117 106498117 C T NCK2 Missense_Mutation p.S187L 0.32 tolerated(0.36) benign(0.001) TCGA-85-A4QQ-01 2 108609462 108609462 G C SLC5A7 Missense_Mutation p.K109N 0.21 tolerated(0.07) benign(0.038) TCGA-85-A4QQ-01 2 11053024 11053024 G A KCNF1 Missense_Mutation p.E158K 0.42 tolerated(0.6) benign(0.036) TCGA-85-A4QQ-01 2 118575028 118575028 A G DDX18 Missense_Mutation p.N32D 0.32 tolerated_low_confidence(1) benign(0) TCGA-85-A4QQ-01 2 128046305 128046305 G C ERCC3 Missense_Mutation p.Q320E 0.27 deleterious(0) probably_damaging(0.993) TCGA-85-A4QQ-01 2 137928482 137928482 T A THSD7B Missense_Mutation p.L566Q 0.29 tolerated(0.41) possibly_damaging(0.883) TCGA-85-A4QQ-01 2 141215043 141215043 C T LRP1B Missense_Mutation p.R3268K 0.08 benign(0.067) TCGA-85-A4QQ-01 2 152321911 152321911 G A RIF1 Silent p.L1959L 0.26 TCGA-85-A4QQ-01 2 165970370 165970370 C G SCN3A Missense_Mutation p.E1209Q 0.33 deleterious(0) possibly_damaging(0.883) TCGA-85-A4QQ-01 2 167055235 167055235 C G SCN9A Missense_Mutation p.D1961H 0.15 deleterious_low_confidence(0.01) probably_damaging(0.932) TCGA-85-A4QQ-01 2 168873555 168873555 C G STK39 Missense_Mutation p.R476T 0.28 tolerated(0.17) benign(0.05) TCGA-85-A4QQ-01 2 170099985 170099985 G C LRP2 Missense_Mutation p.R1160G 0.21 probably_damaging(1) TCGA-85-A4QQ-01 2 179451447 179451447 C G TTN Missense_Mutation p.G21394A 0.26 TCGA-85-A4QQ-01 2 179463349 179463349 C T TTN Missense_Mutation p.D18999N 0.29 TCGA-85-A4QQ-01 2 179593354 179593354 C G TTN Missense_Mutation p.M6433I 0.33 TCGA-85-A4QQ-01 2 179621104 179621104 A G TTN Missense_Mutation p.I3700T 0.29 TCGA-85-A4QQ-01 2 187627238 187627238 G A FAM171B Silent p.E723E 0.26 TCGA-85-A4QQ-01 2 190719768 190719768 C G PMS1 Silent p.L590L 0.24 TCGA-85-A4QQ-01 2 192546739 192546739 G A NABP1 Missense_Mutation p.G100R 0.38 deleterious(0) probably_damaging(1) TCGA-85-A4QQ-01 2 196659096 196659096 G C DNAH7 Missense_Mutation p.S3561C 0.10 deleterious(0.04) benign(0.33) TCGA-85-A4QQ-01 2 196726551 196726551 T C DNAH7 Missense_Mutation p.I2542M 0.20 tolerated(0.17) benign(0.039) TCGA-85-A4QQ-01 2 196746623 196746623 G C DNAH7 Missense_Mutation p.L1953V 0.25 tolerated(0.65) benign(0.015) TCGA-85-A4QQ-01 2 207557896 207557896 C T DYTN Intron 0.30 TCGA-85-A4QQ-01 2 21232665 21232665 C G APOB Missense_Mutation p.D2359H 0.30 possibly_damaging(0.84) TCGA-85-A4QQ-01 2 21256185 21256185 C T APOB Silent p.L370L 0.13 TCGA-85-A4QQ-01 2 215632352 215632352 C T BARD1 Silent p.L474L 0.27 TCGA-85-A4QQ-01 2 219868975 219868975 C G CCDC108 Missense_Mutation p.E1752Q 0.27 tolerated(0.39) benign(0.012) TCGA-85-A4QQ-01 2 220047098 220047098 C T FAM134A Missense_Mutation p.P460L 0.24 tolerated(0.12) benign(0.004) TCGA-85-A4QQ-01 2 241702608 241702608 C G KIF1A Missense_Mutation p.D642H 0.19 deleterious(0) probably_damaging(0.952) TCGA-85-A4QQ-01 2 26699052 26699052 T A OTOF Missense_Mutation p.K937M 0.28 tolerated(0.13) probably_damaging(0.927) TCGA-85-A4QQ-01 2 3193048 3193048 G C TSSC1 3'UTR 0.25 TCGA-85-A4QQ-01 2 32526501 32526501 C G YIPF4 Silent p.L178L 0.19 TCGA-85-A4QQ-01 2 55253525 55253525 C T RTN4 Silent p.K570K 0.23 TCGA-85-A4QQ-01 2 5833534 5833534 C A SOX11 Missense_Mutation p.D227E 0.42 tolerated(0.55) benign(0.001) TCGA-85-A4QQ-01 2 61019275 61019275 T C PAPOLG Silent p.S510S 0.31 TCGA-85-A4QQ-01 2 63283195 63283195 C T OTX1 Missense_Mutation p.S270F 0.23 deleterious(0.05) unknown(0) TCGA-85-A4QQ-01 2 68692191 68692191 C G FBXO48 Missense_Mutation p.E29D 0.36 tolerated(0.25) benign(0.018) TCGA-85-A4QQ-01 2 96954475 96954475 G C SNRNP200 Missense_Mutation p.L1062V 0.35 deleterious(0) probably_damaging(0.956) TCGA-85-A4QQ-01 3 100364796 100364796 C A GPR128 Silent p.T318T 0.22 TCGA-85-A4QQ-01 3 109050738 109050738 T G DPPA4 Missense_Mutation p.K107Q 0.05 deleterious(0.01) possibly_damaging(0.825) TCGA-85-A4QQ-01 3 113847581 113847581 G C DRD3 Silent p.L395L 0.25 TCGA-85-A4QQ-01 3 116163768 116163768 G C LSAMP Silent p.G37G 0.22 TCGA-85-A4QQ-01 3 119109756 119109756 G T ARHGAP31 Missense_Mutation p.R269S 0.24 deleterious(0) benign(0.005) TCGA-85-A4QQ-01 3 122632272 122632272 C A SEMA5B Splice_Site p.X815_splice 0.43 TCGA-85-A4QQ-01 3 124732523 124732523 G A HEG1 Missense_Mutation p.P634S 0.17 tolerated(0.09) probably_damaging(0.911) TCGA-85-A4QQ-01 3 124826388 124826388 C T SLC12A8 Missense_Mutation p.E548K 0.31 tolerated(0.83) benign(0) TCGA-85-A4QQ-01 3 126748369 126748369 C T PLXNA1 Silent p.L1620L 0.26 TCGA-85-A4QQ-01 3 127399284 127399284 A T ABTB1 Missense_Mutation p.E468V 0.36 deleterious(0) possibly_damaging(0.616) TCGA-85-A4QQ-01 3 129389964 129389964 C G TMCC1 Missense_Mutation p.K240N 0.26 deleterious(0) probably_damaging(0.986) TCGA-85-A4QQ-01 3 147128832 147128832 G A ZIC1 Silent p.K311K 0.17 TCGA-85-A4QQ-01 3 149686293 149686293 G A PFN2 Silent p.F59F 0.42 TCGA-85-A4QQ-01 3 151156109 151156109 G C IGSF10 Missense_Mutation p.I2080M 0.13 deleterious(0) probably_damaging(0.969) TCGA-85-A4QQ-01 3 151156161 151156161 G A IGSF10 Missense_Mutation p.S2063F 0.15 deleterious(0) probably_damaging(0.999) TCGA-85-A4QQ-01 3 151166896 151166896 C G IGSF10 Missense_Mutation p.K291N 0.27 deleterious(0) possibly_damaging(0.798) TCGA-85-A4QQ-01 3 155643027 155643027 C T GMPS Intron 0.18 TCGA-85-A4QQ-01 3 164735830 164735830 G A SI Missense_Mutation p.H1150Y 0.17 deleterious(0.01) probably_damaging(0.939) TCGA-85-A4QQ-01 3 164783147 164783147 A T SI Missense_Mutation p.Y237N 0.15 tolerated(0.85) benign(0.02) TCGA-85-A4QQ-01 3 178916854 178916854 G A PIK3CA Missense_Mutation p.E81K 0.34 deleterious(0) probably_damaging(1) TCGA-85-A4QQ-01 3 183885744 183885744 G A DVL3 Silent p.E463E 0.32 TCGA-85-A4QQ-01 3 185774898 185774898 C T ETV5 Missense_Mutation p.R392Q 0.32 deleterious(0) probably_damaging(0.998) TCGA-85-A4QQ-01 3 186289886 186289886 G A DNAJB11 Missense_Mutation p.R24Q 0.29 tolerated(0.12) benign(0.017) TCGA-85-A4QQ-01 3 195605137 195605137 C T TNK2 Missense_Mutation p.V478I 0.16 tolerated(0.9) benign(0.007) TCGA-85-A4QQ-01 3 2777915 2777915 T A CNTN4 Missense_Mutation p.H24Q 0.37 tolerated(0.5) benign(0.004) TCGA-85-A4QQ-01 3 42738563 42738563 C A HHATL Missense_Mutation p.A314S 0.32 tolerated(0.25) benign(0.402) TCGA-85-A4QQ-01 3 52236611 52236611 C T ALAS1 Silent p.P96P 0.32 TCGA-85-A4QQ-01 3 87325561 87325561 C G POU1F1 Missense_Mutation p.D18H 0.37 deleterious_low_confidence(0) probably_damaging(0.951) TCGA-85-A4QQ-01 3 9877031 9877031 G A TTLL3 Missense_Mutation p.R869Q 0.38 tolerated_low_confidence(0.27) benign(0) TCGA-85-A4QQ-01 4 111539652 111539652 G A PITX2 Missense_Mutation p.P202S 0.30 deleterious(0.03) possibly_damaging(0.757) TCGA-85-A4QQ-01 4 2829014 2829014 C T SH3BP2 Silent p.I219I 0.22 TCGA-85-A4QQ-01 4 38698947 38698947 C T KLF3 3'UTR 0.10 TCGA-85-A4QQ-01 4 46390875 46390875 C T GABRA2 Intron 0.56 TCGA-85-A4QQ-01 4 54294356 54294356 T A FIP1L1 Intron 0.42 TCGA-85-A4QQ-01 4 56765950 56765950 C T EXOC1 Missense_Mutation p.S746L 0.41 deleterious(0.03) possibly_damaging(0.867) TCGA-85-A4QQ-01 4 77700398 77700398 C T SHROOM3 3'UTR 0.09 TCGA-85-A4QQ-01 4 7776490 7776490 G A AFAP1 Nonsense_Mutation p.R680* 0.23 TCGA-85-A4QQ-01 4 79238642 79238642 C G FRAS1 Missense_Mutation p.S647C 0.17 benign(0.353) TCGA-85-A4QQ-01 4 84194752 84194752 G C COQ2 Missense_Mutation p.R197G 0.12 deleterious(0) probably_damaging(1) TCGA-85-A4QQ-01 4 84243416 84243416 G A HPSE Missense_Mutation p.S110L 0.09 tolerated(0.29) benign(0.004) TCGA-85-A4QQ-01 5 1324907 1324907 C T CLPTM1L Missense_Mutation p.E390K 0.20 deleterious(0) benign(0.309) TCGA-85-A4QQ-01 5 140202965 140202965 C G PCDHA5 Missense_Mutation p.S535R 0.54 tolerated_low_confidence(0.06) benign(0.238) TCGA-85-A4QQ-01 5 140248978 140248978 G A PCDHA11 Missense_Mutation p.G97E 0.56 tolerated_low_confidence(0.05) possibly_damaging(0.889) TCGA-85-A4QQ-01 5 140517131 140517131 C G PCDHB5 Silent p.L705L 0.56 TCGA-85-A4QQ-01 5 140580631 140580631 A G PCDHB11 Missense_Mutation p.I428M 0.60 deleterious_low_confidence(0) possibly_damaging(0.516) TCGA-85-A4QQ-01 5 140810701 140810701 C G PCDHGA12 Missense_Mutation p.D125E 0.29 deleterious_low_confidence(0) probably_damaging(1) TCGA-85-A4QQ-01 5 15928314 15928314 C A FBXL7 Missense_Mutation p.A148D 0.40 deleterious(0) possibly_damaging(0.528) TCGA-85-A4QQ-01 5 167812298 167812298 G C WWC1 Missense_Mutation p.Q104H 0.16 deleterious(0.02) benign(0.073) TCGA-85-A4QQ-01 5 176943129 176943129 C T DDX41 Missense_Mutation p.E122K 0.05 tolerated(0.19) probably_damaging(0.98) TCGA-85-A4QQ-01 5 179564686 179564686 C T RASGEF1C Silent p.L68L 0.58 TCGA-85-A4QQ-01 5 23527226 23527226 T G PRDM9 Missense_Mutation p.S677A 0.25 deleterious(0.02) possibly_damaging(0.816) TCGA-85-A4QQ-01 5 24487928 24487928 G C CDH10 Silent p.A737A 0.28 TCGA-85-A4QQ-01 5 35876282 35876282 A G IL7R Silent p.P358P 0.32 TCGA-85-A4QQ-01 5 38451431 38451431 G C EGFLAM Missense_Mutation p.R861T 0.25 tolerated(0.06) probably_damaging(0.995) TCGA-85-A4QQ-01 5 38955776 38955776 C G RICTOR Missense_Mutation p.E844Q 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-85-A4QQ-01 5 89968401 89968401 G C GPR98 Missense_Mutation p.E1597D 0.51 probably_damaging(0.973) TCGA-85-A4QQ-01 5 96058421 96058421 G C CAST Intron 0.38 TCGA-85-A4QQ-01 6 105405132 105405132 G A LIN28B Missense_Mutation p.E3K 0.29 tolerated_low_confidence(0.12) unknown(0) TCGA-85-A4QQ-01 6 110636562 110636562 G A METTL24 Silent p.C180C 0.29 TCGA-85-A4QQ-01 6 112392716 112392716 C G TUBE1 Missense_Mutation p.A443P 0.14 deleterious(0) possibly_damaging(0.905) TCGA-85-A4QQ-01 6 117150150 117150150 G A GPRC6A Silent p.T9T 0.12 TCGA-85-A4QQ-01 6 13288637 13288637 C T TBC1D7 Intron 0.08 TCGA-85-A4QQ-01 6 134210973 134210973 C T TCF21 Silent p.H146H 0.39 TCGA-85-A4QQ-01 6 139610051 139610051 C G TXLNB Splice_Site 0.19 TCGA-85-A4QQ-01 6 144780334 144780334 C T UTRN Missense_Mutation p.L851F 0.27 tolerated(0.07) possibly_damaging(0.466) TCGA-85-A4QQ-01 6 146264657 146264657 G C SHPRH Missense_Mutation p.I620M 0.16 tolerated_low_confidence(0.21) benign(0.174) TCGA-85-A4QQ-01 6 146755229 146755229 A C GRM1 Missense_Mutation p.E961A 0.06 tolerated(0.15) benign(0.004) TCGA-85-A4QQ-01 6 146755563 146755563 G T GRM1 Silent p.P1072P 0.24 TCGA-85-A4QQ-01 6 161032740 161032740 C G LPA Missense_Mutation p.Q819H 0.30 deleterious_low_confidence(0.02) probably_damaging(0.971) TCGA-85-A4QQ-01 6 161152219 161152219 C G PLG Missense_Mutation p.P465A 0.22 tolerated(0.11) benign(0.009) TCGA-85-A4QQ-01 6 167549945 167549945 A T CCR6 Missense_Mutation p.K76M 0.17 deleterious(0) probably_damaging(0.996) TCGA-85-A4QQ-01 6 18132403 18132403 G A TPMT Missense_Mutation p.P196S 0.25 deleterious(0) probably_damaging(0.99) TCGA-85-A4QQ-01 6 20126883 20126883 C T MBOAT1 Missense_Mutation p.M193I 0.11 deleterious(0.01) benign(0.292) TCGA-85-A4QQ-01 6 27420046 27420046 G C ZNF184 Nonsense_Mutation p.S431* 0.13 TCGA-85-A4QQ-01 6 29080470 29080470 G C OR2J3 Missense_Mutation p.G268A 0.25 tolerated(0.12) benign(0.197) TCGA-85-A4QQ-01 6 30231326 30231326 G T HCG17 Intron 0.35 TCGA-85-A4QQ-01 6 33381305 33381305 G C PHF1 Missense_Mutation p.Q186H 0.10 deleterious(0.01) benign(0.167) TCGA-85-A4QQ-01 6 49754281 49754281 G T PGK2 Missense_Mutation p.P207H 0.06 deleterious(0.01) possibly_damaging(0.602) TCGA-85-A4QQ-01 6 53409511 53409511 G A GCLC 5'UTR 0.30 TCGA-85-A4QQ-01 6 55216332 55216332 C A GFRAL Missense_Mutation p.P218T 0.25 deleterious(0) probably_damaging(0.998) TCGA-85-A4QQ-01 6 64421145 64421145 G A PHF3 Missense_Mutation p.R1295K 0.11 tolerated(0.1) probably_damaging(0.999) TCGA-85-A4QQ-01 6 69348828 69348828 T G BAI3 Silent p.A87A 0.23 TCGA-85-A4QQ-01 6 82950259 82950259 G A IBTK 5'UTR 0.24 TCGA-85-A4QQ-01 7 124404324 124404324 C T GPR37 Missense_Mutation p.R236H 0.30 deleterious(0.05) benign(0.005) TCGA-85-A4QQ-01 7 128475379 128475379 G C FLNC Splice_Site p.X118_splice 0.38 TCGA-85-A4QQ-01 7 128475481 128475481 G C FLNC Missense_Mutation p.D152H 0.50 deleterious(0.01) possibly_damaging(0.655) TCGA-85-A4QQ-01 7 130138282 130138282 C T MEST Missense_Mutation p.R167W 0.52 deleterious(0.04) benign(0.015) TCGA-85-A4QQ-01 7 138603756 138603756 C A KIAA1549 Nonsense_Mutation p.E206* 0.21 TCGA-85-A4QQ-01 7 141794424 141794424 G A MGAM Missense_Mutation p.M1541I 0.11 tolerated(0.1) benign(0.064) TCGA-85-A4QQ-01 7 1539622 1539622 G A INTS1 Silent p.I194I 0.41 TCGA-85-A4QQ-01 7 31146107 31146107 C T ADCYAP1R1 Intron 0.26 TCGA-85-A4QQ-01 7 48259000 48259000 G A ABCA13 Missense_Mutation p.A113T 0.22 benign(0.01) TCGA-85-A4QQ-01 7 48313515 48313515 C T ABCA13 Nonsense_Mutation p.Q1418* 0.38 TCGA-85-A4QQ-01 7 63982542 63982549 AGATGTGA - ZNF680 Frame_Shift_Del p.S195Nfs*9 0.37 TCGA-85-A4QQ-01 7 6805389 6805389 T A RSPH10B2 Missense_Mutation p.V209E 0.15 deleterious(0.04) benign(0.023) TCGA-85-A4QQ-01 7 72877377 72877377 G C BAZ1B Missense_Mutation p.L1042V 0.10 tolerated(0.07) probably_damaging(0.996) TCGA-85-A4QQ-01 7 82435009 82435009 C T PCLO Silent p.P4976P 0.28 TCGA-85-A4QQ-01 7 90419937 90419937 G A CDK14 Missense_Mutation p.E154K 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-85-A4QQ-01 7 95705417 95705417 G C DYNC1I1 Missense_Mutation p.D537H 0.20 deleterious(0) probably_damaging(0.972) TCGA-85-A4QQ-01 7 99032701 99032701 G A ATP5J2-PTCD1 Silent p.L104L 0.58 TCGA-85-A4QQ-01 8 100587899 100587899 C G VPS13B Missense_Mutation p.Q1680E 0.09 tolerated(0.15) possibly_damaging(0.585) TCGA-85-A4QQ-01 8 110566117 110566117 G T EBAG9 Missense_Mutation p.S36I 0.58 deleterious(0.01) probably_damaging(0.982) TCGA-85-A4QQ-01 8 116427193 116427193 C G TRPS1 Missense_Mutation p.R981S 0.14 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-85-A4QQ-01 8 127569228 127569228 T A FAM84B Missense_Mutation p.Y136F 0.43 tolerated(0.09) probably_damaging(0.949) TCGA-85-A4QQ-01 8 131922087 131922087 C T ADCY8 Missense_Mutation p.D503N 0.12 tolerated(0.13) possibly_damaging(0.6) TCGA-85-A4QQ-01 8 139380202 139380202 C G FAM135B Missense_Mutation p.E9Q 0.11 deleterious(0) probably_damaging(0.996) TCGA-85-A4QQ-01 8 139635976 139635976 G A COL22A1 Missense_Mutation p.P1257L 0.17 unknown(0) TCGA-85-A4QQ-01 8 145665551 145665558 GCAGCCTC - TONSL Frame_Shift_Del p.R443Afs*6 0.14 TCGA-85-A4QQ-01 8 145999907 145999907 C G ZNF34 Missense_Mutation p.E143Q 0.12 tolerated(0.1) benign(0.109) TCGA-85-A4QQ-01 8 30916059 30916059 G - WRN Frame_Shift_Del 0.19 TCGA-85-A4QQ-01 8 53028855 53028855 C T ST18 Missense_Mutation p.D995N 0.40 tolerated(1) possibly_damaging(0.78) TCGA-85-A4QQ-01 8 59499150 59499150 T C NSMAF Silent p.L802L 0.21 TCGA-85-A4QQ-01 8 77766342 77766342 C A ZFHX4 Silent p.P2395P 0.51 TCGA-85-A4QQ-01 8 82751969 82751969 C G SNX16 Missense_Mutation p.E85Q 0.14 deleterious(0.03) possibly_damaging(0.566) TCGA-85-A4QQ-01 8 94800073 94800073 G A TMEM67 Missense_Mutation p.V472I 0.52 tolerated(1) benign(0.004) TCGA-85-A4QQ-01 8 95412657 95412657 C T RAD54B Missense_Mutation p.E327K 0.15 deleterious(0) probably_damaging(0.996) TCGA-85-A4QQ-01 8 97299290 97299290 C G PTDSS1 Silent p.L119L 0.15 TCGA-85-A4QQ-01 9 116858367 116858367 C G KIF12 Missense_Mutation p.E149Q 0.49 deleterious(0) probably_damaging(1) TCGA-85-A4QQ-01 9 120475237 120475237 A T TLR4 Silent p.L277L 0.48 TCGA-85-A4QQ-01 9 124976050 124976050 G A LHX6 Nonsense_Mutation p.Q297* 0.54 TCGA-85-A4QQ-01 9 128509715 128509715 C T PBX3 5'Flank 0.71 TCGA-85-A4QQ-01 9 131477129 131477129 C T PKN3 Missense_Mutation p.P546L 0.47 tolerated(0.22) benign(0.02) TCGA-85-A4QQ-01 9 131589358 131589358 G A C9orf114 Silent p.F107F 0.39 TCGA-85-A4QQ-01 9 136282902 136282902 A T REXO4 Silent p.G21G 0.48 TCGA-85-A4QQ-01 9 19360403 19360403 C G DENND4C Silent p.L1725L 0.40 TCGA-85-A4QQ-01 9 32632419 32632419 T C TAF1L Silent p.T1053T 0.58 TCGA-85-A4QQ-01 9 34269341 34269341 C T KIF24 Missense_Mutation p.A453T 0.29 deleterious(0) probably_damaging(0.997) TCGA-85-A4QQ-01 9 37974736 37974736 C A SHB Nonsense_Mutation p.E313* 0.45 TCGA-85-A4QQ-01 9 4629093 4629093 G A SPATA6L Missense_Mutation p.L85F 0.48 tolerated(0.61) probably_damaging(0.986) TCGA-85-A4QQ-01 9 5064947 5064947 G C JAK2 Missense_Mutation p.R374T 0.48 deleterious(0) probably_damaging(0.94) TCGA-85-A4QQ-01 9 5090909 5090909 C G JAK2 Missense_Mutation p.F1019L 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-85-A4QQ-01 9 74347428 74347428 G C TMEM2 Missense_Mutation p.Q468E 0.52 tolerated(0.31) benign(0.027) TCGA-85-A4QQ-01 9 75567944 75567944 G A ALDH1A1 5'UTR 0.29 TCGA-85-A4QQ-01 9 84268952 84268952 C G TLE1 Splice_Site p.X79_splice 0.49 TCGA-85-A4QQ-01 9 99277940 99277940 C G CDC14B Intron 0.25 TCGA-85-A4QQ-01 X 102004448 102004448 G A BHLHB9 Silent p.G175G 0.51 TCGA-85-A4QQ-01 X 117959937 117959937 A T ZCCHC12 Missense_Mutation p.S244C 0.17 deleterious(0.01) possibly_damaging(0.807) TCGA-85-A4QQ-01 X 123519774 123519774 G C TENM1 Missense_Mutation p.I1943M 0.58 tolerated(0.11) benign(0.092) TCGA-85-A4QQ-01 X 153762652 153762652 C A G6PD Missense_Mutation p.R212L 0.67 deleterious(0.02) benign(0.01) TCGA-85-A4QQ-01 X 1540635 1540635 G C ASMTL Silent p.L387L 0.27 TCGA-85-A4QQ-01 X 155237192 155237192 A G IL9R Missense_Mutation p.K298E 0.17 deleterious(0) probably_damaging(0.997) TCGA-85-A4QQ-01 X 43626797 43626797 G A MAOB Silent p.L493L 0.61 TCGA-85-A4QQ-01 X 47041571 47041573 ATG - RBM10 In_Frame_Del p.N599_A600delinsT 0.34 TCGA-85-A4QQ-01 X 54959824 54959824 C A PFKFB1 3'UTR 0.46 TCGA-85-A4QQ-01 X 6069217 6069217 C A NLGN4X Missense_Mutation p.W97C 0.58 deleterious(0) probably_damaging(0.998) TCGA-85-A4QQ-01 X 69255260 69255260 A G EDA Missense_Mutation p.E326G 0.50 tolerated_low_confidence(0.22) benign(0.093) TCGA-85-A4QQ-01 X 69652512 69652512 G C GDPD2 Splice_Site p.X564_splice 0.58 TCGA-85-A4QQ-01 X 72667406 72667406 C T CDX4 Missense_Mutation p.A106V 0.50 tolerated(0.84) benign(0.003) TCGA-85-A4QQ-01 X 91873754 91873754 G A PCDH11X Missense_Mutation p.D1287N 0.50 tolerated_low_confidence(0.11) benign(0.312) TCGA-85-A4QR-01 10 103792856 103792856 A G C10orf76 Missense_Mutation p.I78T 0.41 deleterious(0.01) benign(0.036) TCGA-85-A4QR-01 10 123596242 123596242 C T ATE1 Missense_Mutation p.M416I 0.10 deleterious(0.02) probably_damaging(0.96) TCGA-85-A4QR-01 10 127726904 127726904 G A ADAM12 Missense_Mutation p.S755F 0.26 deleterious(0.03) benign(0.243) TCGA-85-A4QR-01 10 129160454 129160454 A G DOCK1 Missense_Mutation p.H1116R 0.38 tolerated(0.32) benign(0) TCGA-85-A4QR-01 10 129350799 129350799 G T NPS Missense_Mutation p.A56S 0.07 tolerated(0.16) benign(0.033) TCGA-85-A4QR-01 10 133949483 133949483 A C JAKMIP3 Missense_Mutation p.K340T 0.26 deleterious(0) possibly_damaging(0.812) TCGA-85-A4QR-01 10 134660468 134660468 C G TTC40 Missense_Mutation p.A2079P 0.37 tolerated(0.13) benign(0.372) TCGA-85-A4QR-01 10 21097513 21097513 T C NEBL Missense_Mutation p.D896G 0.32 deleterious(0.01) benign(0) TCGA-85-A4QR-01 10 30317085 30317085 G T KIAA1462 Silent p.L664L 0.29 TCGA-85-A4QR-01 10 33000656 33000656 G T C10ORF68 Missense_Mutation p.S163I 0.29 deleterious(0.01) probably_damaging(0.965) TCGA-85-A4QR-01 10 43608343 43608343 C A RET Missense_Mutation p.T564N 0.36 tolerated(0.05) benign(0.047) TCGA-85-A4QR-01 10 44052755 44052755 G A ZNF239 Missense_Mutation p.T258I 0.37 deleterious(0.04) benign(0.222) TCGA-85-A4QR-01 10 50819682 50819682 C A SLC18A3 Missense_Mutation p.T299N 0.48 deleterious(0.01) possibly_damaging(0.889) TCGA-85-A4QR-01 10 72026124 72026124 T A NPFFR1 Missense_Mutation p.S11C 0.60 deleterious(0.05) benign(0.285) TCGA-85-A4QR-01 10 83635622 83635622 C A NRG3 Silent p.R176R 0.43 TCGA-85-A4QR-01 10 95556853 95556853 G C LGI1 Missense_Mutation p.D323H 0.34 deleterious(0.01) probably_damaging(0.992) TCGA-85-A4QR-01 11 112089287 112089287 A G BCO2 3'UTR 0.08 TCGA-85-A4QR-01 11 117299406 117299406 C T DSCAML1 Missense_Mutation p.A1994T 0.39 tolerated_low_confidence(0.29) benign(0.02) TCGA-85-A4QR-01 11 119142539 119142539 C T CBL Missense_Mutation p.R180W 0.15 deleterious(0) probably_damaging(1) TCGA-85-A4QR-01 11 123513327 123513327 C T SCN3B Missense_Mutation p.R91H 0.55 deleterious(0) probably_damaging(1) TCGA-85-A4QR-01 11 125548088 125548088 C G ACRV1 Missense_Mutation p.E53Q 0.06 tolerated(0.16) possibly_damaging(0.888) TCGA-85-A4QR-01 11 49831656 49831656 C A RP11-707M1.1 RNA 0.44 TCGA-85-A4QR-01 11 55037925 55037925 T A TRIM48 3'UTR 0.21 TCGA-85-A4QR-01 11 56085843 56085843 G T OR8K3 Missense_Mutation p.A21S 0.46 tolerated_low_confidence(0.06) benign(0.004) TCGA-85-A4QR-01 11 56114267 56114267 G A OR8K1 Silent p.L251L 0.39 TCGA-85-A4QR-01 11 57946900 57946900 C G OR9Q1 Intron 0.10 TCGA-85-A4QR-01 11 58715342 58715342 T C GLYATL1 Silent p.S61S 0.36 TCGA-85-A4QR-01 11 62911208 62911208 C G SLC22A24 Missense_Mutation p.R15T 0.38 deleterious(0) possibly_damaging(0.471) TCGA-85-A4QR-01 11 64853984 64853984 C T ZFPL1 Silent p.I104I 0.34 TCGA-85-A4QR-01 11 65402043 65402043 C T PCNXL3 Missense_Mutation p.T1579M 0.21 deleterious(0) probably_damaging(0.99) TCGA-85-A4QR-01 11 67021687 67021687 C T KDM2A Silent p.R1035R 0.11 TCGA-85-A4QR-01 12 101505364 101505364 G A ANO4 Missense_Mutation p.G741S 0.21 deleterious(0.04) probably_damaging(1) TCGA-85-A4QR-01 12 10342668 10342668 C A TMEM52B Missense_Mutation p.P141T 0.35 deleterious(0.01) possibly_damaging(0.447) TCGA-85-A4QR-01 12 108603973 108603973 C T WSCD2 Silent p.S191S 0.23 TCGA-85-A4QR-01 12 109609636 109609636 G T ACACB Missense_Mutation p.V318F 0.22 deleterious(0) probably_damaging(0.947) TCGA-85-A4QR-01 12 120151283 120151283 T C CIT Missense_Mutation p.K1493E 0.37 deleterious(0) possibly_damaging(0.755) TCGA-85-A4QR-01 12 120597783 120597783 G A GCN1L1 Silent p.I865I 0.30 TCGA-85-A4QR-01 12 120785317 120785317 G A MSI1 Missense_Mutation p.A264V 0.50 tolerated(0.16) benign(0.244) TCGA-85-A4QR-01 12 123054365 123054365 A G KNTC1 Silent p.E618E 0.19 TCGA-85-A4QR-01 12 124422091 124422091 C T CCDC92 Missense_Mutation p.M170I 0.07 tolerated(0.18) benign(0.004) TCGA-85-A4QR-01 12 18891387 18891387 C A CAPZA3 Missense_Mutation p.P62Q 0.36 deleterious(0) probably_damaging(0.998) TCGA-85-A4QR-01 12 247478 247478 C A IQSEC3 Missense_Mutation p.R317S 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-85-A4QR-01 12 31945076 31945076 G A H3F3C Missense_Mutation p.R9C 0.37 deleterious_low_confidence(0.02) benign(0.003) TCGA-85-A4QR-01 12 53715240 53715240 G C AAAS Missense_Mutation p.L4V 0.08 deleterious(0) possibly_damaging(0.628) TCGA-85-A4QR-01 12 58201399 58201399 G A AVIL Missense_Mutation p.P436S 0.06 tolerated(0.76) benign(0.035) TCGA-85-A4QR-01 12 62104121 62104121 T C FAM19A2 3'UTR 0.32 TCGA-85-A4QR-01 12 7080045 7080045 C G EMG1 5'UTR 0.42 TCGA-85-A4QR-01 12 7354405 7354405 A T PEX5 Nonsense_Mutation p.K219* 0.48 TCGA-85-A4QR-01 12 83424619 83424619 G C TMTC2 Missense_Mutation p.E705Q 0.21 tolerated(1) benign(0.004) TCGA-85-A4QR-01 12 8689763 8689763 T C CLEC4E Missense_Mutation p.N107S 0.22 tolerated(0.09) benign(0.078) TCGA-85-A4QR-01 12 9322092 9322092 G A PZP Silent p.F645F 0.18 TCGA-85-A4QR-01 13 108959256 108959256 C A TNFSF13B Silent p.V276V 0.94 TCGA-85-A4QR-01 13 114748794 114748794 G A RASA3 Silent p.I823I 0.64 TCGA-85-A4QR-01 13 21396410 21396410 C G XPO4 Missense_Mutation p.E287Q 0.23 tolerated(0.48) benign(0.04) TCGA-85-A4QR-01 13 29601010 29601010 C T MTUS2 Silent p.F735F 0.69 TCGA-85-A4QR-01 13 39585557 39585557 G A PROSER1 Missense_Mutation p.A927V 0.20 tolerated(0.09) benign(0.07) TCGA-85-A4QR-01 13 45010782 45010782 C T TSC22D1 Intron 0.30 TCGA-85-A4QR-01 13 50587076 50587076 A G TRIM13 Missense_Mutation p.M337V 0.71 tolerated(0.54) benign(0) TCGA-85-A4QR-01 14 104642931 104642931 G A KIF26A Missense_Mutation p.R1269Q 0.74 tolerated(0.12) benign(0) TCGA-85-A4QR-01 14 19563581 19563581 A T POTEG Intron 0.16 TCGA-85-A4QR-01 14 21992279 21992279 G T SALL2 Missense_Mutation p.P528H 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-85-A4QR-01 14 30095693 30095693 C A PRKD1 Nonsense_Mutation p.G599* 0.76 TCGA-85-A4QR-01 14 50074590 50074590 A C LRR1 Missense_Mutation p.K252T 0.79 tolerated(0.61) benign(0) TCGA-85-A4QR-01 14 50655330 50655330 T C SOS2 Missense_Mutation p.Y200C 0.47 deleterious(0.02) benign(0.007) TCGA-85-A4QR-01 14 57272152 57272152 G A OTX2 Missense_Mutation p.P8L 0.13 deleterious(0) benign(0.003) TCGA-85-A4QR-01 14 70924392 70924392 G C ADAM21 Missense_Mutation p.G59A 0.78 deleterious(0) possibly_damaging(0.904) TCGA-85-A4QR-01 14 72137998 72137998 T G SIPA1L1 Silent p.T806T 0.53 TCGA-85-A4QR-01 14 74086277 74086277 T C ACOT6 Missense_Mutation p.Y120H 0.10 tolerated(0.07) probably_damaging(0.997) TCGA-85-A4QR-01 14 79433713 79433713 C T NRXN3 Silent p.I607I 0.28 TCGA-85-A4QR-01 14 99183558 99183558 C G C14orf177 Missense_Mutation p.P109A 0.59 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-85-A4QR-01 15 102304516 102304516 G T DNM1P47 RNA 0.16 TCGA-85-A4QR-01 15 20644190 20644190 G A HERC2P3 RNA 0.35 TCGA-85-A4QR-01 15 45954203 45954203 A G SQRDL Silent p.Q95Q 0.64 TCGA-85-A4QR-01 15 51240274 51240274 A G AP4E1 Missense_Mutation p.K412E 0.59 deleterious(0) probably_damaging(1) TCGA-85-A4QR-01 15 55838619 55838619 G A PYGO1 Missense_Mutation p.R288C 0.25 tolerated(0.06) possibly_damaging(0.791) TCGA-85-A4QR-01 15 62167088 62167088 A G VPS13C Silent p.F3467F 0.04 TCGA-85-A4QR-01 15 64010991 64010991 C T HERC1 Missense_Mutation p.G1283E 0.27 benign(0.009) TCGA-85-A4QR-01 16 2499914 2499914 G T CCNF Missense_Mutation p.K495N 0.70 deleterious(0.02) probably_damaging(0.995) TCGA-85-A4QR-01 16 25143735 25143735 G A LCMT1 Missense_Mutation p.R73Q 0.18 deleterious(0.03) probably_damaging(1) TCGA-85-A4QR-01 16 48595056 48595056 T G N4BP1 Missense_Mutation p.S500R 0.69 deleterious(0.02) benign(0.442) TCGA-85-A4QR-01 16 745503 745503 C G FBXL16 Missense_Mutation p.D352H 0.19 deleterious(0) probably_damaging(0.98) TCGA-85-A4QR-01 16 815304 815304 G T MSLN Splice_Site p.X235_splice 0.64 TCGA-85-A4QR-01 17 10206737 10206737 G T MYH13 Missense_Mutation p.R1849S 0.77 deleterious(0) probably_damaging(0.995) TCGA-85-A4QR-01 17 27890087 27890087 T A ABHD15 Missense_Mutation p.E300V 0.35 tolerated(0.15) benign(0.158) TCGA-85-A4QR-01 17 28409954 28409954 C T EFCAB5 Missense_Mutation p.R1158W 0.37 deleterious(0) probably_damaging(1) TCGA-85-A4QR-01 17 33446153 33446153 G A RAD51D Nonsense_Mutation p.Q41* 0.12 TCGA-85-A4QR-01 17 37783639 37783639 G T PPP1R1B 5'UTR 0.32 TCGA-85-A4QR-01 17 38643670 38643670 T C TNS4 Silent p.S302S 0.39 TCGA-85-A4QR-01 17 38652357 38652357 C G TNS4 Missense_Mutation p.Q107H 0.04 deleterious(0.02) benign(0.037) TCGA-85-A4QR-01 17 39506703 39506703 T A KRT33A Missense_Mutation p.Y106F 0.35 tolerated(0.07) benign(0.168) TCGA-85-A4QR-01 17 46703291 46703291 G T HOXB9 Missense_Mutation p.A114E 0.23 tolerated(0.74) benign(0.217) TCGA-85-A4QR-01 17 57759715 57759715 G A CLTC Missense_Mutation p.A1176T 0.18 deleterious(0) probably_damaging(1) TCGA-85-A4QR-01 17 67016541 67016541 C A ABCA9 Missense_Mutation p.S863I 0.49 tolerated(0.35) benign(0.006) TCGA-85-A4QR-01 17 679137 679137 T A GLOD4 Missense_Mutation p.Q95L 0.62 tolerated(0.11) benign(0.005) TCGA-85-A4QR-01 17 7319363 7319363 C A NLGN2 Missense_Mutation p.S524Y 0.29 deleterious(0) probably_damaging(0.995) TCGA-85-A4QR-01 17 7577586 7577586 A G TP53 Missense_Mutation p.I232T 0.76 deleterious(0) possibly_damaging(0.617) TCGA-85-A4QR-01 17 76137097 76137097 C T TMC8 Silent p.V695V 0.47 TCGA-85-A4QR-01 17 77926545 77926545 G A TBC1D16 Silent p.D284D 0.43 TCGA-85-A4QR-01 18 29625603 29625603 A G RNF125 Splice_Site p.X138_splice 0.04 TCGA-85-A4QR-01 18 34324083 34324102 CCATGGTGGTAGAAAACTTC - FHOD3 Frame_Shift_Del p.M1149Rfs*19 0.65 TCGA-85-A4QR-01 18 42533058 42533058 G C SETBP1 Missense_Mutation p.L1251F 0.42 deleterious_low_confidence(0.03) possibly_damaging(0.549) TCGA-85-A4QR-01 18 61058201 61058201 C G VPS4B 3'UTR 0.19 TCGA-85-A4QR-01 18 67992064 67992064 T A SOCS6 Missense_Mutation p.C54S 0.30 tolerated_low_confidence(0.25) benign(0.01) TCGA-85-A4QR-01 19 15791088 15791088 G T CYP4F12 Missense_Mutation p.R126S 0.38 tolerated(0.52) benign(0.006) TCGA-85-A4QR-01 19 18245651 18245651 G - MAST3 Frame_Shift_Del p.A548Pfs*4 0.17 TCGA-85-A4QR-01 19 18943013 18943013 G A UPF1 5'UTR 0.40 TCGA-85-A4QR-01 19 2097954 2097962 GGTAAGCAA - IZUMO4 Splice_Site p.X133_splice 0.47 TCGA-85-A4QR-01 19 39868206 39868206 G A SAMD4B Missense_Mutation p.V396I 0.75 tolerated(0.39) benign(0.001) TCGA-85-A4QR-01 19 39899391 39899391 C T ZFP36 3'UTR 0.71 TCGA-85-A4QR-01 19 39960850 39960850 C G SUPT5H Missense_Mutation p.T489R 0.59 deleterious(0) probably_damaging(1) TCGA-85-A4QR-01 19 4171670 4171670 C A CREB3L3 Missense_Mutation p.H364N 0.30 deleterious(0.04) benign(0.007) TCGA-85-A4QR-01 19 48922980 48922980 T C GRIN2D Missense_Mutation p.V667A 0.71 deleterious(0) probably_damaging(0.994) TCGA-85-A4QR-01 19 54313641 54313641 C A NLRP12 Missense_Mutation p.L424F 0.40 deleterious(0.04) benign(0.059) TCGA-85-A4QR-01 19 54396278 54396278 C A PRKCG Nonsense_Mutation p.Y286* 0.44 TCGA-85-A4QR-01 19 58549271 58549271 G A ZSCAN1 Missense_Mutation p.D23N 0.28 deleterious(0.01) probably_damaging(0.992) TCGA-85-A4QR-01 19 613911 613911 C T HCN2 Missense_Mutation p.R629C 0.05 deleterious(0.01) probably_damaging(0.981) TCGA-85-A4QR-01 1 108247618 108247618 C A VAV3 Missense_Mutation p.R523L 0.21 deleterious(0.04) possibly_damaging(0.851) TCGA-85-A4QR-01 1 11716050 11716050 G A FBXO44 Missense_Mutation p.R53Q 0.06 tolerated(0.31) benign(0.013) TCGA-85-A4QR-01 1 149783498 149783498 T G HIST2H2BF Intron 0.65 TCGA-85-A4QR-01 1 156810757 156810757 C T INSRR Missense_Mutation p.A1268T 0.19 tolerated(0.26) benign(0.021) TCGA-85-A4QR-01 1 158670254 158670254 G C OR6K2 Missense_Mutation p.I63M 0.22 deleterious(0) probably_damaging(0.973) TCGA-85-A4QR-01 1 160721988 160721988 A C SLAMF7 Missense_Mutation p.K296Q 0.08 tolerated(0.11) benign(0.021) TCGA-85-A4QR-01 1 16355330 16355330 T C CLCNKA Missense_Mutation p.L348P 0.58 deleterious(0) possibly_damaging(0.853) TCGA-85-A4QR-01 1 171174665 171174665 G T FMO2 Missense_Mutation p.A359S 0.27 tolerated(0.09) benign(0.006) TCGA-85-A4QR-01 1 173769545 173769545 A G CENPL 3'UTR 0.29 TCGA-85-A4QR-01 1 17395469 17395469 A C PADI2 3'UTR 0.07 TCGA-85-A4QR-01 1 178433442 178433442 G A RASAL2 Missense_Mutation p.M1094I 0.52 deleterious(0.03) benign(0.167) TCGA-85-A4QR-01 1 180031383 180031383 A G CEP350 Missense_Mutation p.N1764S 0.17 benign(0.126) TCGA-85-A4QR-01 1 182544431 182544431 C T RNASEL 3'UTR 0.16 TCGA-85-A4QR-01 1 185953436 185953436 G C HMCN1 Missense_Mutation p.V976L 0.26 benign(0.09) TCGA-85-A4QR-01 1 190423825 190423825 T C BRINP3 Missense_Mutation p.R66G 0.50 deleterious(0) benign(0.327) TCGA-85-A4QR-01 1 217915355 217915355 A G SPATA17 Missense_Mutation p.E145G 0.16 deleterious(0) probably_damaging(0.91) TCGA-85-A4QR-01 1 220193451 220193451 T A EPRS Missense_Mutation p.I410F 0.49 deleterious(0.01) probably_damaging(0.936) TCGA-85-A4QR-01 1 220193452 220193452 A T EPRS Silent p.I409I 0.48 TCGA-85-A4QR-01 1 237947541 237947541 G T RYR2 Missense_Mutation p.V4177F 0.25 probably_damaging(0.992) TCGA-85-A4QR-01 1 246755178 246755178 A C CNST Missense_Mutation p.D105A 0.24 tolerated(0.06) benign(0.187) TCGA-85-A4QR-01 1 247614995 247614995 C G OR2B11 Missense_Mutation p.S97T 0.29 tolerated(0.32) probably_damaging(0.952) TCGA-85-A4QR-01 1 24932294 24932294 C T NCMAP 3'UTR 0.52 TCGA-85-A4QR-01 1 32194233 32194233 C T BAI2 Missense_Mutation p.R1461Q 0.63 deleterious(0) probably_damaging(0.943) TCGA-85-A4QR-01 1 36644131 36644131 G A MAP7D1 Missense_Mutation p.R607Q 0.78 possibly_damaging(0.553) TCGA-85-A4QR-01 1 40126918 40126918 T C NT5C1A Missense_Mutation p.I192V 0.27 tolerated(0.38) benign(0.002) TCGA-85-A4QR-01 1 42875692 42875692 C G RIMKLA Silent p.L173L 0.31 TCGA-85-A4QR-01 1 43824834 43824834 C G CDC20 5'UTR 0.10 TCGA-85-A4QR-01 1 44596392 44596392 T C KLF17 Silent p.N378N 0.33 TCGA-85-A4QR-01 1 55464863 55464863 G T BSND Missense_Mutation p.A2S 0.25 tolerated(0.06) possibly_damaging(0.742) TCGA-85-A4QR-01 1 89479049 89479049 T C GBP3 Silent p.P229P 0.06 TCGA-85-A4QR-01 1 89844037 89844037 G - GBP6 Frame_Shift_Del p.E164Kfs*7 0.35 TCGA-85-A4QR-01 20 18297150 18297150 G T ZNF133 Missense_Mutation p.C551F 0.18 deleterious(0) probably_damaging(1) TCGA-85-A4QR-01 20 60892036 60892036 T C LAMA5 Missense_Mutation p.I2519V 0.14 benign(0.011) TCGA-85-A4QR-01 21 38529171 38529171 A T TTC3 Silent p.A985A 0.73 TCGA-85-A4QR-01 21 41719645 41719645 G A DSCAM Missense_Mutation p.R388C 0.30 deleterious(0.04) probably_damaging(0.959) TCGA-85-A4QR-01 21 46032401 46032401 C A KRTAP10-8 Nonsense_Mutation p.C128* 0.15 TCGA-85-A4QR-01 22 19211499 19211499 C A CLTCL1 Missense_Mutation p.C736F 0.43 deleterious(0) possibly_damaging(0.83) TCGA-85-A4QR-01 22 20939398 20939398 G C MED15 Missense_Mutation p.V659L 0.45 tolerated(0.56) benign(0.173) TCGA-85-A4QR-01 22 22682090 22682090 C A IGLV1-50 Nonsense_Mutation p.S91* 0.03 TCGA-85-A4QR-01 22 25282667 25282668 - C SGSM1 Frame_Shift_Ins p.G637Rfs*24 0.38 TCGA-85-A4QR-01 22 31011587 31011610 GTTCCTCATGACTTCCCCCATGCG - TCN2 Splice_Site p.X252_splice 0.43 TCGA-85-A4QR-01 22 36723524 36723524 T A MYH9 Missense_Mutation p.D167V 0.32 probably_damaging(0.998) TCGA-85-A4QR-01 22 37332605 37332605 G A CSF2RB Silent p.E493E 0.27 TCGA-85-A4QR-01 22 42016776 42016776 C A DESI1 Missense_Mutation p.R23L 0.23 tolerated(0.27) benign(0.002) TCGA-85-A4QR-01 22 50727514 50727514 G A PLXNB2 Missense_Mutation p.R376C 0.46 deleterious(0.01) possibly_damaging(0.863) TCGA-85-A4QR-01 2 11295763 11295763 G A PQLC3 Missense_Mutation p.A31T 0.47 tolerated(0.15) benign(0.068) TCGA-85-A4QR-01 2 119735445 119735445 G A MARCO Missense_Mutation p.G234R 0.29 tolerated(0.53) probably_damaging(0.999) TCGA-85-A4QR-01 2 125262001 125262001 T A CNTNAP5 Missense_Mutation p.W398R 0.32 deleterious(0) probably_damaging(1) TCGA-85-A4QR-01 2 136103134 136103134 A C ZRANB3 Missense_Mutation p.C221W 0.36 deleterious(0) probably_damaging(1) TCGA-85-A4QR-01 2 144966215 144966215 G A GTDC1 Missense_Mutation p.S45F 0.28 deleterious(0) possibly_damaging(0.797) TCGA-85-A4QR-01 2 15696908 15696908 T G NBAS Missense_Mutation p.S70R 0.45 deleterious(0.02) benign(0.037) TCGA-85-A4QR-01 2 163280042 163280042 A T KCNH7 Missense_Mutation p.L653Q 0.41 deleterious(0) probably_damaging(1) TCGA-85-A4QR-01 2 165947226 165947226 G A SCN3A Missense_Mutation p.L1813F 0.34 deleterious(0) probably_damaging(1) TCGA-85-A4QR-01 2 166245742 166245742 C T SCN2A Missense_Mutation p.A1809V 0.42 deleterious(0) probably_damaging(0.997) TCGA-85-A4QR-01 2 167162302 167162302 G A SCN9A Missense_Mutation p.A199V 0.07 deleterious(0) probably_damaging(1) TCGA-85-A4QR-01 2 170912036 170912036 C T UBR3 Missense_Mutation p.S1576L 0.12 deleterious(0.02) probably_damaging(0.984) TCGA-85-A4QR-01 2 176964663 176964663 C T HOXD12 Missense_Mutation p.P45L 0.39 deleterious(0.02) possibly_damaging(0.852) TCGA-85-A4QR-01 2 176981742 176981742 G C HOXD10 Missense_Mutation p.E61Q 0.43 deleterious(0.04) probably_damaging(0.993) TCGA-85-A4QR-01 2 179432987 179432987 C T TTN Missense_Mutation p.G25958S 0.54 TCGA-85-A4QR-01 2 187694594 187694594 G T ZSWIM2 Missense_Mutation p.P319T 0.40 deleterious(0.04) probably_damaging(0.933) TCGA-85-A4QR-01 2 190531196 190531196 C T ASNSD1 Missense_Mutation p.S113L 0.12 deleterious(0) probably_damaging(0.94) TCGA-85-A4QR-01 2 196642575 196642575 T C DNAH7 Silent p.S3671S 0.34 TCGA-85-A4QR-01 2 20457997 20457997 C A PUM2 Intron 0.35 TCGA-85-A4QR-01 2 207513396 207513396 C G DYTN 3'Flank 0.27 TCGA-85-A4QR-01 2 219029100 219029100 G A CXCR1 Missense_Mutation p.R279C 0.20 tolerated(0.11) benign(0.035) TCGA-85-A4QR-01 2 231222650 231222650 G A SP140L Missense_Mutation p.D80N 0.20 deleterious(0) probably_damaging(0.928) TCGA-85-A4QR-01 2 242169009 242169009 T C HDLBP 3'UTR 0.64 TCGA-85-A4QR-01 2 25965674 25965674 C T ASXL2 Missense_Mutation p.E1178K 0.43 tolerated(0.05) possibly_damaging(0.489) TCGA-85-A4QR-01 2 27424298 27424298 T A SLC5A6 Missense_Mutation p.Y523F 0.40 deleterious(0) probably_damaging(0.999) TCGA-85-A4QR-01 2 33759394 33759394 C T RASGRP3 Missense_Mutation p.S363F 0.19 deleterious(0) probably_damaging(0.993) TCGA-85-A4QR-01 2 3750149 3750149 C G ALLC Missense_Mutation p.P391R 0.28 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-85-A4QR-01 3 108565914 108565914 G T TRAT1 Splice_Site p.X51_splice 0.31 TCGA-85-A4QR-01 3 111368715 111368715 G C CD96 3'UTR 0.39 TCGA-85-A4QR-01 3 112267449 112267449 C T ATG3 Missense_Mutation p.D92N 0.29 tolerated(0.1) benign(0.033) TCGA-85-A4QR-01 3 114070149 114070149 C T ZBTB20 Missense_Mutation p.R259H 0.08 deleterious(0.03) benign(0.002) TCGA-85-A4QR-01 3 130095126 130095126 C T COL6A5 Silent p.S38S 0.48 TCGA-85-A4QR-01 3 137822798 137822798 C T DZIP1L Missense_Mutation p.A6T 0.44 tolerated(1) benign(0.002) TCGA-85-A4QR-01 3 139071512 139071512 T C MRPS22 Silent p.D252D 0.34 TCGA-85-A4QR-01 3 154138942 154138942 T A GPR149 Missense_Mutation p.E503D 0.60 tolerated(0.48) benign(0.016) TCGA-85-A4QR-01 3 169579525 169579525 T C LRRC31 Silent p.K84K 0.29 TCGA-85-A4QR-01 3 180321110 180321110 C G TTC14 Missense_Mutation p.T162R 0.08 deleterious(0.01) possibly_damaging(0.816) TCGA-85-A4QR-01 3 184017681 184017681 G T PSMD2 Missense_Mutation p.V60L 0.60 deleterious(0.02) benign(0.089) TCGA-85-A4QR-01 3 195400762 195400762 C G SDHAP2 RNA 0.64 TCGA-85-A4QR-01 3 197427833 197427833 C G KIAA0226 Missense_Mutation p.E304D 0.31 tolerated_low_confidence(0.15) benign(0.005) TCGA-85-A4QR-01 3 47284635 47284635 C A KIF9 Missense_Mutation p.G539W 0.66 deleterious(0.03) possibly_damaging(0.566) TCGA-85-A4QR-01 3 49083970 49083970 G A QRICH1 Missense_Mutation p.A520V 0.29 deleterious(0.01) possibly_damaging(0.733) TCGA-85-A4QR-01 3 55021734 55021734 G C CACNA2D3 Missense_Mutation p.E882Q 0.65 tolerated(0.18) probably_damaging(0.995) TCGA-85-A4QR-01 3 62478082 62478082 C A CADPS Nonsense_Mutation p.E923* 0.70 TCGA-85-A4QR-01 3 73433743 73433743 G A PDZRN3 Silent p.S658S 0.12 TCGA-85-A4QR-01 4 114275005 114275005 C T ANK2 Missense_Mutation p.A1744V 0.70 benign(0.007) TCGA-85-A4QR-01 4 146029202 146029202 A G ABCE1 Silent p.L75L 0.73 TCGA-85-A4QR-01 4 3768748 3768748 A T ADRA2C Missense_Mutation p.I139F 0.70 deleterious(0) probably_damaging(0.999) TCGA-85-A4QR-01 4 37848689 37848689 A C PGM2 Missense_Mutation p.K382T 0.66 deleterious(0.02) benign(0.345) TCGA-85-A4QR-01 4 420193 420193 G A ABCA11P RNA 0.18 TCGA-85-A4QR-01 4 49052832 49052832 A G CWH43 Missense_Mutation p.R663G 0.25 tolerated(0.08) benign(0.149) TCGA-85-A4QR-01 4 57189670 57189670 G T KIAA1211 Silent p.A1105A 0.21 TCGA-85-A4QR-01 4 6086674 6086674 G A JAKMIP1 Nonsense_Mutation p.R285* 0.62 TCGA-85-A4QR-01 4 79351480 79351480 G C FRAS1 Silent p.A1626A 0.90 TCGA-85-A4QR-01 4 88957370 88957370 A G PKD2 Splice_Site p.X237_splice 0.76 TCGA-85-A4QR-01 5 135290553 135290553 G C LECT2 5'UTR 0.26 TCGA-85-A4QR-01 5 140182288 140182288 C T PCDHA3 Silent p.R502R 0.67 TCGA-85-A4QR-01 5 140188054 140188054 C T PCDHA4 Nonsense_Mutation p.R428* 0.71 TCGA-85-A4QR-01 5 140228654 140228654 C T PCDHA9 Missense_Mutation p.L192F 0.25 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-85-A4QR-01 5 140264046 140264046 G C PCDHA13 Silent p.A731A 0.70 TCGA-85-A4QR-01 5 140784372 140784372 C A PCDHGA9 Nonsense_Mutation p.S618* 0.66 TCGA-85-A4QR-01 5 140812561 140812561 G T PCDHGA12 Silent p.G745G 0.70 TCGA-85-A4QR-01 5 141304986 141304986 A G KIAA0141 Missense_Mutation p.H53R 0.58 tolerated(0.15) benign(0.004) TCGA-85-A4QR-01 5 171766016 171766016 C T SH3PXD2B Missense_Mutation p.R698Q 0.10 tolerated(0.19) benign(0.005) TCGA-85-A4QR-01 5 172396594 172396594 G T RPL26L1 3'UTR 0.47 TCGA-85-A4QR-01 5 176827614 176827614 G C PFN3 5'UTR 0.75 TCGA-85-A4QR-01 5 180045769 180045769 C G FLT4 Splice_Site p.X1001_splice 0.80 TCGA-85-A4QR-01 5 182176 182176 A T PLEKHG4B Missense_Mutation p.K1185M 0.03 deleterious(0) probably_damaging(0.999) TCGA-85-A4QR-01 5 182266 182266 C T PLEKHG4B Missense_Mutation p.S1215F 0.07 tolerated(0.5) benign(0.131) TCGA-85-A4QR-01 5 19473532 19473532 C G CDH18 Missense_Mutation p.D726H 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-85-A4QR-01 5 19571802 19571802 G T CDH18 Missense_Mutation p.P380Q 0.25 deleterious(0) benign(0.203) TCGA-85-A4QR-01 5 26886117 26886117 C G CDH9 Missense_Mutation p.E530Q 0.03 tolerated(0.09) possibly_damaging(0.459) TCGA-85-A4QR-01 5 2747679 2747679 T C IRX2 Nonstop_Mutation p.*472Wext*9 0.06 TCGA-85-A4QR-01 5 34043152 34043152 T C C1QTNF3 Missense_Mutation p.M27V 0.12 tolerated_low_confidence(0.14) benign(0) TCGA-85-A4QR-01 5 42689117 42689117 A G GHR Missense_Mutation p.R88G 0.29 deleterious(0) probably_damaging(0.997) TCGA-85-A4QR-01 5 96503421 96503421 C G RIOK2 Missense_Mutation p.E383Q 0.17 tolerated(0.22) benign(0.004) TCGA-85-A4QR-01 6 106536173 106536174 CT - PRDM1 Frame_Shift_Del p.L48Vfs*5 0.31 TCGA-85-A4QR-01 6 123892124 123892124 G A TRDN Missense_Mutation p.T59M 0.44 deleterious_low_confidence(0) possibly_damaging(0.488) TCGA-85-A4QR-01 6 14133975 14133975 A G CD83 Missense_Mutation p.I160V 0.44 tolerated(0.11) possibly_damaging(0.621) TCGA-85-A4QR-01 6 146673556 146673556 T A GRM1 Missense_Mutation p.F453I 0.39 deleterious(0.02) possibly_damaging(0.542) TCGA-85-A4QR-01 6 146720165 146720165 G A GRM1 Missense_Mutation p.V664I 0.42 tolerated(0.79) benign(0.123) TCGA-85-A4QR-01 6 146755837 146755838 - C GRM1 Frame_Shift_Ins p.V1166Rfs*83 0.31 TCGA-85-A4QR-01 6 153043186 153043186 C A MYCT1 Missense_Mutation p.P169H 0.40 deleterious(0) probably_damaging(1) TCGA-85-A4QR-01 6 159654044 159654044 A G FNDC1 Missense_Mutation p.R834G 0.50 deleterious_low_confidence(0) unknown(0) TCGA-85-A4QR-01 6 167549596 167549596 A G CCR6 5'UTR 0.42 TCGA-85-A4QR-01 6 168348988 168348988 C T MLLT4 Missense_Mutation p.P1214S 0.28 tolerated_low_confidence(0.11) benign(0.043) TCGA-85-A4QR-01 6 168461507 168461507 C T FRMD1 Missense_Mutation p.E426K 0.34 tolerated(0.14) benign(0.021) TCGA-85-A4QR-01 6 26108207 26108207 C T HIST1H1T Missense_Mutation p.V39M 0.40 deleterious(0.02) benign(0.078) TCGA-85-A4QR-01 6 27218567 27218567 C A PRSS16 Silent p.A191A 0.37 TCGA-85-A4QR-01 6 27799120 27799120 G C HIST1H4K Missense_Mutation p.F62L 0.20 deleterious(0) possibly_damaging(0.739) TCGA-85-A4QR-01 6 28963441 28963441 G A ZNF311 Silent p.P446P 0.44 TCGA-85-A4QR-01 6 33410957 33410957 G A SYNGAP1 Silent p.S876S 0.43 TCGA-85-A4QR-01 6 84563479 84563479 A G RIPPLY2 Missense_Mutation p.H54R 0.32 tolerated(0.37) benign(0.003) TCGA-85-A4QR-01 6 97247593 97247593 T A GPR63 Silent p.A5A 0.39 TCGA-85-A4QR-01 6 99825282 99825282 C A COQ3 Missense_Mutation p.G156C 0.27 deleterious(0) probably_damaging(0.999) TCGA-85-A4QR-01 6 99848732 99848732 T A PNISR Missense_Mutation p.D701V 0.41 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-85-A4QR-01 7 126544124 126544124 C A GRM8 Missense_Mutation p.G307V 0.45 deleterious(0) probably_damaging(0.918) TCGA-85-A4QR-01 7 137237167 137237167 C T DGKI Missense_Mutation p.A699T 0.52 deleterious(0) probably_damaging(0.998) TCGA-85-A4QR-01 7 149557707 149557707 C T ZNF862 Silent p.F486F 0.23 TCGA-85-A4QR-01 7 18914168 18914168 G A HDAC9 Missense_Mutation p.A918T 0.21 deleterious(0.03) probably_damaging(0.994) TCGA-85-A4QR-01 7 20441453 20441453 A C ITGB8 Missense_Mutation p.H464P 0.44 deleterious(0.04) possibly_damaging(0.857) TCGA-85-A4QR-01 7 20824923 20824923 C T SP8 Silent p.Q171Q 0.56 TCGA-85-A4QR-01 7 26904166 26904166 A T SKAP2 5'UTR 0.42 TCGA-85-A4QR-01 7 43580843 43580843 C A HECW1 Nonsense_Mutation p.Y1367* 0.41 TCGA-85-A4QR-01 7 51261091 51261091 G A COBL Silent p.P147P 0.29 TCGA-85-A4QR-01 7 91743148 91743148 C T CYP51A1 Missense_Mutation p.R454H 0.09 deleterious(0) probably_damaging(0.999) TCGA-85-A4QR-01 7 91852232 91852232 C T KRIT1 Missense_Mutation p.G439R 0.46 deleterious(0) probably_damaging(1) TCGA-85-A4QR-01 7 92765194 92765194 C G SAMD9L Missense_Mutation p.E31Q 0.18 tolerated(1) benign(0.074) TCGA-85-A4QR-01 8 104439472 104439472 C T DCAF13 Missense_Mutation p.P358S 0.69 deleterious(0.02) possibly_damaging(0.835) TCGA-85-A4QR-01 8 26500974 26500974 G T DPYSL2 Missense_Mutation p.E277D 0.53 deleterious(0) probably_damaging(0.963) TCGA-85-A4QR-01 8 38853073 38853073 T G TM2D2 Intron 0.04 TCGA-85-A4QR-01 8 59494344 59494344 T A SDCBP 3'UTR 0.76 TCGA-85-A4QR-01 8 72951967 72951967 C A TRPA1 Missense_Mutation p.M709I 0.27 deleterious(0) benign(0.429) TCGA-85-A4QR-01 8 89198820 89198820 T C MMP16 Missense_Mutation p.K97E 0.68 deleterious(0) benign(0.164) TCGA-85-A4QR-01 9 105767811 105767811 G T CYLC2 Missense_Mutation p.A300S 0.50 tolerated(0.58) unknown(0) TCGA-85-A4QR-01 9 107367892 107367892 T C OR13C2 Missense_Mutation p.H6R 0.58 tolerated(0.34) benign(0) TCGA-85-A4QR-01 9 116359226 116359226 C A RGS3 Missense_Mutation p.P1197Q 0.56 deleterious_low_confidence(0) possibly_damaging(0.872) TCGA-85-A4QR-01 9 131193498 131193498 G A CERCAM Silent p.P373P 0.71 TCGA-85-A4QR-01 9 21971107 21971107 T C CDKN2A Missense_Mutation p.D84G 0.62 deleterious(0) probably_damaging(1) TCGA-85-A4QR-01 9 40773880 40773880 C A ZNF658 Missense_Mutation p.E465D 0.32 tolerated(0.08) benign(0.007) TCGA-85-A4QR-01 X 142596684 142596684 C A SPANXN3 Missense_Mutation p.G129V 0.84 deleterious_low_confidence(0.03) benign(0.166) TCGA-85-A4QR-01 X 151821580 151821580 G A GABRQ Missense_Mutation p.E579K 0.06 tolerated(0.1) possibly_damaging(0.622) TCGA-85-A4QR-01 X 24537066 24537066 C T PDK3 Silent p.A204A 0.63 TCGA-85-A4QR-01 X 30260751 30260751 A T MAGEB4 Nonsense_Mutation p.K167* 0.69 TCGA-85-A4QR-01 X 36103620 36103620 C A CHDC2 Silent p.L202L 0.74 TCGA-85-A4QR-01 X 77912540 77912540 C A ZCCHC5 Missense_Mutation p.V460F 0.69 deleterious(0) probably_damaging(0.988) TCGA-85-A4QR-01 X 9900372 9900372 C T SHROOM2 Nonsense_Mutation p.R1017* 0.42 TCGA-85-A50M-01 10 69934005 69934005 G T MYPN Missense_Mutation p.S719I 0.09 deleterious(0.01) benign(0.221) TCGA-85-A50M-01 10 81318735 81318736 - T SFTPA2 Frame_Shift_Ins p.P67Tfs*7 0.10 TCGA-85-A50M-01 11 116703588 116703588 C A APOC3 Silent p.A96A 0.16 TCGA-85-A50M-01 11 129979350 129979351 - T APLP2 Frame_Shift_Ins p.A46Cfs*4 0.29 TCGA-85-A50M-01 11 18735868 18735868 A T IGSF22 Missense_Mutation p.F585Y 0.16 deleterious(0.01) benign(0.232) TCGA-85-A50M-01 11 46903410 46903410 C T LRP4 Missense_Mutation p.R886Q 0.07 tolerated(0.06) probably_damaging(0.943) TCGA-85-A50M-01 11 76917144 76917144 A G MYO7A Missense_Mutation p.N1880S 0.33 tolerated(0.5) possibly_damaging(0.648) TCGA-85-A50M-01 12 121615009 121615009 C T P2RX7 Silent p.F344F 0.09 TCGA-85-A50M-01 12 25254153 25254153 C A LRMP Missense_Mutation p.H261Q 0.30 deleterious(0.03) probably_damaging(0.996) TCGA-85-A50M-01 12 81768534 81768534 T - PPFIA2 Frame_Shift_Del p.N382Tfs*10 0.14 TCGA-85-A50M-01 14 105422989 105422989 C T AHNAK2 Missense_Mutation p.R84Q 0.08 benign(0.018) TCGA-85-A50M-01 14 33292155 33292155 G A AKAP6 Silent p.P1712P 0.09 TCGA-85-A50M-01 14 55818042 55818042 G T FBXO34 Missense_Mutation p.V312L 0.08 deleterious(0) possibly_damaging(0.549) TCGA-85-A50M-01 14 77732567 77732567 C A NGB 3'UTR 0.14 TCGA-85-A50M-01 14 95081357 95081357 A T SERPINA3 Silent p.T193T 0.22 TCGA-85-A50M-01 15 22969256 22969256 G T CYFIP1 Missense_Mutation p.A828S 0.15 deleterious(0.03) probably_damaging(0.998) TCGA-85-A50M-01 15 43507338 43507338 G A EPB42 Missense_Mutation p.L159F 0.10 tolerated(0.69) benign(0.001) TCGA-85-A50M-01 15 81601073 81601073 T C IL16 Silent p.P1311P 0.14 TCGA-85-A50M-01 16 3349798 3349798 C T TIGD7 Missense_Mutation p.E273K 0.09 tolerated(0.06) probably_damaging(0.949) TCGA-85-A50M-01 16 47162347 47162347 C T NETO2 Missense_Mutation p.V124M 0.28 tolerated(0.14) benign(0.017) TCGA-85-A50M-01 17 10348360 10348360 C T MYH4 Missense_Mutation p.R1800H 0.06 deleterious(0.01) benign(0.258) TCGA-85-A50M-01 17 10358518 10358518 G T MYH4 Missense_Mutation p.H757N 0.47 deleterious(0.03) possibly_damaging(0.718) TCGA-85-A50M-01 17 33510532 33510533 - GCG UNC45B In_Frame_Ins p.A825dup 0.11 TCGA-85-A50M-01 17 60814612 60814612 G C MARCH10 Missense_Mutation p.S206W 0.08 deleterious(0) probably_damaging(0.924) TCGA-85-A50M-01 17 7579389 7579389 G A TP53 Nonsense_Mutation p.Q100* 0.33 TCGA-85-A50M-01 18 28934577 28934577 C T DSG1 Silent p.T806T 0.12 TCGA-85-A50M-01 18 56024484 56024484 G T NEDD4L Silent p.P589P 0.08 TCGA-85-A50M-01 18 66378600 66378600 C G TMX3 Splice_Site p.X47_splice 0.09 TCGA-85-A50M-01 18 76754096 76754096 C T SALL3 Missense_Mutation p.T702M 0.13 deleterious(0) probably_damaging(1) TCGA-85-A50M-01 19 1271224 1271224 C T CIRBP Silent p.A63A 0.20 TCGA-85-A50M-01 19 2790493 2790493 C G THOP1 Missense_Mutation p.Q31E 0.18 tolerated(1) benign(0) TCGA-85-A50M-01 19 30934539 30934539 C A ZNF536 Missense_Mutation p.P24T 0.14 tolerated_low_confidence(0.52) benign(0.001) TCGA-85-A50M-01 19 55177694 55177694 A T LILRB4 Missense_Mutation p.Q293L 0.29 tolerated(0.14) benign(0.003) TCGA-85-A50M-01 1 114680470 114680470 C T SYT6 Missense_Mutation p.D155N 0.08 tolerated(0.07) possibly_damaging(0.641) TCGA-85-A50M-01 1 157494328 157494328 G T FCRL5 Silent p.I660I 0.14 TCGA-85-A50M-01 1 164768934 164768934 A T PBX1 Splice_Site p.X171_splice 0.13 TCGA-85-A50M-01 1 217604657 217604657 G A GPATCH2 Nonsense_Mutation p.R473* 0.07 TCGA-85-A50M-01 1 237604636 237604636 G T RYR2 Silent p.G341G 0.14 TCGA-85-A50M-01 1 237870341 237870341 G A RYR2 Missense_Mutation p.G3225S 0.31 probably_damaging(0.94) TCGA-85-A50M-01 1 247586612 247586612 G T NLRP3 Nonsense_Mutation p.E122* 0.13 TCGA-85-A50M-01 1 25825009 25825009 A C TMEM57 3'UTR 0.09 TCGA-85-A50M-01 1 6202364 6202364 C A CHD5 Missense_Mutation p.V754F 0.10 deleterious(0) probably_damaging(0.995) TCGA-85-A50M-01 1 6639554 6639554 C T TAS1R1 Silent p.C812C 0.22 TCGA-85-A50M-01 20 23016578 23016578 G T SSTR4 Missense_Mutation p.R153L 0.09 deleterious(0.03) benign(0.023) TCGA-85-A50M-01 20 2446374 2446374 C A SNRPB Nonsense_Mutation p.E83* 0.14 TCGA-85-A50M-01 20 33297090 33297090 C T TP53INP2 Missense_Mutation p.R59C 0.33 tolerated(0.18) probably_damaging(0.917) TCGA-85-A50M-01 20 5904017 5904017 G T CHGB Missense_Mutation p.R409S 0.17 deleterious(0.01) possibly_damaging(0.742) TCGA-85-A50M-01 21 40608651 40608651 G A BRWD1 Missense_Mutation p.P879L 0.15 deleterious(0) probably_damaging(0.997) TCGA-85-A50M-01 21 46841487 46841487 A G COL18A1-AS1 RNA 0.11 TCGA-85-A50M-01 22 43465834 43465834 T C TTLL1 Missense_Mutation p.I44V 0.19 tolerated(0.99) benign(0.004) TCGA-85-A50M-01 22 44285305 44285305 G T PNPLA5 Silent p.P202P 0.40 TCGA-85-A50M-01 2 11935558 11935558 G C LPIN1 Missense_Mutation p.A660P 0.15 tolerated(0.2) benign(0.005) TCGA-85-A50M-01 2 129026243 129026243 G C HS6ST1 Nonsense_Mutation p.Y243* 0.10 TCGA-85-A50M-01 2 149240842 149240842 G A MBD5 Silent p.Q894Q 0.09 TCGA-85-A50M-01 2 164465940 164465940 C A FIGN 3'UTR 0.33 TCGA-85-A50M-01 2 169842773 169842773 G C ABCB11 Missense_Mutation p.F310L 0.17 tolerated(0.14) benign(0.213) TCGA-85-A50M-01 2 178370245 178370245 C G AGPS Missense_Mutation p.A496G 0.07 tolerated(0.26) benign(0.101) TCGA-85-A50M-01 2 46986887 46986887 G A SOCS5 Silent p.R406R 0.08 TCGA-85-A50M-01 2 70504018 70504018 C G PCYOX1 Missense_Mutation p.Q338E 0.09 tolerated(0.08) benign(0.008) TCGA-85-A50M-01 3 124951522 124951522 G A ZNF148 Missense_Mutation p.S683L 0.24 deleterious(0) possibly_damaging(0.469) TCGA-85-A50M-01 3 14239566 14239566 G A LSM3 Missense_Mutation p.V87I 0.09 tolerated(0.15) benign(0.045) TCGA-85-A50M-01 3 194117887 194117887 C A GP5 Silent p.L375L 0.27 TCGA-85-A50M-01 3 196281420 196281420 C G WDR53 Missense_Mutation p.V247L 0.21 tolerated(0.05) probably_damaging(0.944) TCGA-85-A50M-01 3 38039011 38039011 G A VILL Missense_Mutation p.R200H 0.17 deleterious(0) probably_damaging(0.989) TCGA-85-A50M-01 3 4853030 4853030 A T ITPR1 Missense_Mutation p.T2437S 0.15 deleterious(0) probably_damaging(0.999) TCGA-85-A50M-01 3 50685361 50685361 G - MAPKAPK3 Frame_Shift_Del p.D345Tfs*5 0.16 TCGA-85-A50M-01 3 52416414 52416414 C T DNAH1 Silent p.V2628V 0.07 TCGA-85-A50M-01 3 62358025 62358025 G A FEZF2 Silent p.N173N 0.19 TCGA-85-A50M-01 3 97868310 97868310 G T OR5H14 Silent p.L27L 0.10 TCGA-85-A50M-01 4 100540175 100540175 G T MTTP Missense_Mutation p.Q754H 0.32 deleterious(0) possibly_damaging(0.827) TCGA-85-A50M-01 4 114290925 114290925 C A ANK2 Silent p.T3858T 0.29 TCGA-85-A50M-01 4 125590382 125590382 T C ANKRD50 Silent p.Q1350Q 0.21 TCGA-85-A50M-01 4 15826559 15826559 G C CD38 Missense_Mutation p.R140P 0.18 tolerated(0.17) benign(0.05) TCGA-85-A50M-01 4 16504479 16504479 T C LDB2 Silent p.G303G 0.06 TCGA-85-A50M-01 4 89577062 89577062 C A HERC3 Silent p.L315L 0.11 TCGA-85-A50M-01 4 98865058 98865058 A C STPG2 Missense_Mutation p.V345G 0.14 deleterious(0.01) benign(0.179) TCGA-85-A50M-01 5 140084103 140084103 G A ZMAT2 Missense_Mutation p.E135K 0.20 tolerated(0.29) possibly_damaging(0.558) TCGA-85-A50M-01 5 140176553 140176553 G A PCDHA2 Silent p.S668S 0.20 TCGA-85-A50M-01 5 21751912 21751912 G T CDH12 Silent p.P773P 0.11 TCGA-85-A50M-01 5 26903841 26903841 C T CDH9 Missense_Mutation p.E302K 0.13 tolerated(0.14) benign(0.109) TCGA-85-A50M-01 5 41382483 41382483 C A PLCXD3 Missense_Mutation p.G86V 0.12 deleterious(0.04) benign(0.094) TCGA-85-A50M-01 5 45262699 45262699 G T HCN1 Missense_Mutation p.P666Q 0.10 tolerated_low_confidence(0.11) benign(0.418) TCGA-85-A50M-01 5 76326641 76326641 C T AGGF1 Missense_Mutation p.S17F 0.20 tolerated_low_confidence(0.22) unknown(0) TCGA-85-A50M-01 5 7709325 7709325 G T ADCY2 Missense_Mutation p.G468V 0.15 tolerated(0.2) benign(0.001) TCGA-85-A50M-01 5 96443146 96443146 G T LIX1 Missense_Mutation p.S102Y 0.16 deleterious(0) probably_damaging(0.931) TCGA-85-A50M-01 6 46216513 46216513 C T RCAN2 Missense_Mutation p.E116K 0.19 tolerated(0.19) benign(0.102) TCGA-85-A50M-01 6 46216600 46216600 C T RCAN2 Missense_Mutation p.D87N 0.12 tolerated(0.09) benign(0.188) TCGA-85-A50M-01 6 46216624 46216624 C T RCAN2 Missense_Mutation p.E79K 0.11 deleterious(0) benign(0.277) TCGA-85-A50M-01 6 53372411 53372411 C T GCLC Silent p.L317L 0.08 TCGA-85-A50M-01 6 53519600 53519600 C T KLHL31 Silent p.K157K 0.12 TCGA-85-A50M-01 6 57183306 57183306 C A PRIM2 Silent p.S21S 0.40 TCGA-85-A50M-01 6 90406279 90406279 G A MDN1 Silent p.L3061L 0.11 TCGA-85-A50M-01 7 132192530 132192530 C T PLXNA4 Missense_Mutation p.R308H 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-85-A50M-01 7 140156661 140156661 G A MKRN1 Silent p.C259C 0.15 TCGA-85-A50M-01 7 154876165 154876165 G A HTR5A Missense_Mutation p.A348T 0.09 deleterious(0.04) probably_damaging(0.984) TCGA-85-A50M-01 7 158726894 158726894 A T WDR60 Missense_Mutation p.N874I 0.32 deleterious(0) benign(0.049) TCGA-85-A50M-01 7 55242465 55242479 GGAATTAAGAGAAGC - EGFR In_Frame_Del p.E746_A750del 0.44 TCGA-85-A50M-01 7 62752391 62752391 C A ZNF733P RNA 0.22 TCGA-85-A50M-01 9 111956555 111956555 T G EPB41L4B Missense_Mutation p.N723T 0.09 deleterious_low_confidence(0.01) benign(0) TCGA-85-A50M-01 9 119943476 119943476 G T ASTN2 Intron 0.33 TCGA-85-A50M-01 9 133760697 133760697 C G ABL1 Nonsense_Mutation p.S1026* 0.09 TCGA-85-A50M-01 9 139793176 139793176 C T TRAF2 5'UTR 0.27 TCGA-85-A50M-01 9 14776009 14776009 G C FREM1 Silent p.L1545L 0.08 TCGA-85-A50M-01 9 21971108 21971108 C T CDKN2A Missense_Mutation p.D84N 0.35 deleterious(0) probably_damaging(1) TCGA-85-A50M-01 9 34611177 34611177 C A RPP25L Silent p.L39L 0.25 TCGA-85-A50M-01 9 86153052 86153052 A G FRMD3 Missense_Mutation p.M32T 0.19 tolerated(0.26) benign(0.003) TCGA-85-A50M-01 9 95152304 95152304 C G OGN Missense_Mutation p.L154F 0.09 tolerated(0.13) probably_damaging(0.949) TCGA-85-A50M-01 9 98278879 98278879 C T RP11-435O5.4 3'Flank 0.12 TCGA-85-A50M-01 X 41203316 41203316 C A DDX3X Missense_Mutation p.P267T 0.26 deleterious(0) probably_damaging(0.983) TCGA-85-A50M-01 X 83128199 83128199 T C CYLC1 Silent p.T161T 0.31 TCGA-85-A50Z-01 10 103869237 103869237 C G LDB1 Missense_Mutation p.E254Q 0.25 tolerated(0.06) probably_damaging(0.994) TCGA-85-A50Z-01 10 120817744 120817744 C A EIF3A Silent p.R567R 0.36 TCGA-85-A50Z-01 10 124345666 124345666 C A DMBT1 Missense_Mutation p.T517N 0.47 deleterious(0) unknown(0) TCGA-85-A50Z-01 10 135038276 135038276 G T KNDC1 Missense_Mutation p.G1711V 0.38 deleterious(0.01) possibly_damaging(0.76) TCGA-85-A50Z-01 10 25465186 25465186 C T GPR158 Silent p.P279P 0.50 TCGA-85-A50Z-01 10 26241055 26241055 G T MYO3A Nonsense_Mutation p.G6* 0.12 TCGA-85-A50Z-01 10 26575389 26575389 A T GAD2 Missense_Mutation p.D451V 0.47 deleterious(0) probably_damaging(0.998) TCGA-85-A50Z-01 10 26589954 26589954 G A GAD2 3'UTR 0.47 TCGA-85-A50Z-01 10 27459721 27459721 A G MASTL Silent p.T611T 0.34 TCGA-85-A50Z-01 10 27470496 27470496 G C MASTL Missense_Mutation p.R823T 0.38 deleterious(0) probably_damaging(0.999) TCGA-85-A50Z-01 10 31809360 31809360 G C ZEB1 Missense_Mutation p.C367S 0.49 tolerated(0.39) possibly_damaging(0.519) TCGA-85-A50Z-01 10 34400452 34400452 G T PARD3 Missense_Mutation p.S1239Y 0.10 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-85-A50Z-01 10 46250400 46250400 T A FAM21C Missense_Mutation p.F419L 0.17 tolerated(0.1) possibly_damaging(0.526) TCGA-85-A50Z-01 10 50530911 50530911 G A C10orf71 Silent p.Q107Q 0.12 TCGA-85-A50Z-01 10 69648881 69648881 G T SIRT1 Silent p.G263G 0.10 TCGA-85-A50Z-01 10 69648882 69648882 G T SIRT1 Splice_Site p.X263_splice 0.10 TCGA-85-A50Z-01 10 70451145 70451145 A C TET1 Silent p.S1995S 0.18 TCGA-85-A50Z-01 10 89717777 89717777 G T PTEN Splice_Site p.X267_splice 0.17 TCGA-85-A50Z-01 10 98412494 98412494 T A PIK3AP1 Nonsense_Mutation p.K225* 0.13 TCGA-85-A50Z-01 10 99141510 99141510 G C RRP12 Missense_Mutation p.H428D 0.17 deleterious(0.01) benign(0.007) TCGA-85-A50Z-01 11 103814302 103814302 A T PDGFD Missense_Mutation p.F217Y 0.11 deleterious(0) possibly_damaging(0.803) TCGA-85-A50Z-01 11 111612829 111612829 T C PPP2R1B Silent p.L579L 0.14 TCGA-85-A50Z-01 11 118376800 118376800 A T KMT2A Missense_Mutation p.Q3398L 0.15 possibly_damaging(0.48) TCGA-85-A50Z-01 11 119045664 119045664 G T NLRX1 Missense_Mutation p.G451V 0.14 tolerated(0.23) benign(0.282) TCGA-85-A50Z-01 11 119170263 119170263 C T CBL Silent p.I831I 0.19 TCGA-85-A50Z-01 11 123464865 123464865 C A GRAMD1B Missense_Mutation p.L111I 0.17 deleterious(0) probably_damaging(0.999) TCGA-85-A50Z-01 11 124007959 124007959 G T VWA5A Missense_Mutation p.K621N 0.16 tolerated(0.6) benign(0.004) TCGA-85-A50Z-01 11 124750331 124750331 T A ROBO3 Missense_Mutation p.Y1326N 0.32 deleterious_low_confidence(0) possibly_damaging(0.757) TCGA-85-A50Z-01 11 124766947 124766947 G A ROBO4 Missense_Mutation p.P94L 0.22 deleterious(0.03) benign(0.058) TCGA-85-A50Z-01 11 17333593 17333593 C T NUCB2 Missense_Mutation p.P280S 0.20 tolerated(0.13) possibly_damaging(0.788) TCGA-85-A50Z-01 11 20660064 20660064 C A SLC6A5 Silent p.I643I 0.04 TCGA-85-A50Z-01 11 2154085 2154085 G T IGF2 3'UTR 0.14 TCGA-85-A50Z-01 11 26621108 26621108 G T ANO3 Silent p.V561V 0.17 TCGA-85-A50Z-01 11 32439200 32439200 A G WT1 Silent p.S291S 0.25 TCGA-85-A50Z-01 11 32739639 32739639 C A CCDC73 Nonsense_Mutation p.E64* 0.11 TCGA-85-A50Z-01 11 46792435 46792435 C A CKAP5 Missense_Mutation p.R1030L 0.24 deleterious(0) probably_damaging(0.991) TCGA-85-A50Z-01 11 55659045 55659045 C A TRIM51 Nonsense_Mutation p.Y432* 0.17 TCGA-85-A50Z-01 11 55659073 55659073 C A TRIM51 Missense_Mutation p.P442T 0.10 deleterious(0.01) possibly_damaging(0.9) TCGA-85-A50Z-01 11 55703850 55703850 C A OR5I1 Silent p.T9T 0.19 TCGA-85-A50Z-01 11 55927361 55927361 C A OR8K5 Missense_Mutation p.V145L 0.13 deleterious_low_confidence(0.03) possibly_damaging(0.658) TCGA-85-A50Z-01 11 56185388 56185388 G A OR5R1 Silent p.F107F 0.15 TCGA-85-A50Z-01 11 56237744 56237744 G T OR5M3 Missense_Mutation p.P77H 0.22 deleterious(0) possibly_damaging(0.623) TCGA-85-A50Z-01 11 56237745 56237745 G T OR5M3 Missense_Mutation p.P77T 0.22 deleterious(0) probably_damaging(0.963) TCGA-85-A50Z-01 11 58170762 58170762 G T OR5B3 Missense_Mutation p.L41M 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.476) TCGA-85-A50Z-01 11 58170763 58170763 G T OR5B3 Missense_Mutation p.N40K 0.18 deleterious_low_confidence(0) probably_damaging(1) TCGA-85-A50Z-01 11 60183646 60183646 C G MS4A14 Missense_Mutation p.S435C 0.16 tolerated(0.17) probably_damaging(0.922) TCGA-85-A50Z-01 11 62299668 62299668 G T AHNAK Missense_Mutation p.H741N 0.18 benign(0.205) TCGA-85-A50Z-01 11 64645842 64645842 T A EHD1 Missense_Mutation p.K32M 0.15 deleterious(0) possibly_damaging(0.897) TCGA-85-A50Z-01 11 64985079 64985079 A T SLC22A20 RNA 0.08 TCGA-85-A50Z-01 11 6897973 6897973 T C OR10A4 Missense_Mutation p.F32S 0.16 deleterious(0) probably_damaging(0.955) TCGA-85-A50Z-01 11 6898797 6898797 C G OR10A4 Missense_Mutation p.H307D 0.20 tolerated(0.25) benign(0.001) TCGA-85-A50Z-01 11 7334754 7334754 A G SYT9 Missense_Mutation p.D209G 0.19 tolerated(0.12) possibly_damaging(0.587) TCGA-85-A50Z-01 11 74914065 74914065 G C SLCO2B1 Intron 0.14 TCGA-85-A50Z-01 11 76063081 76063081 T G PRKRIR Silent p.S371S 0.15 TCGA-85-A50Z-01 11 76063335 76063335 G C PRKRIR Missense_Mutation p.H287D 0.13 tolerated(0.5) benign(0.01) TCGA-85-A50Z-01 11 8160011 8160011 T C RIC3 Intron 0.29 TCGA-85-A50Z-01 11 82642876 82642876 G C C11orf82 Missense_Mutation p.V166L 0.14 tolerated(0.28) benign(0.022) TCGA-85-A50Z-01 12 100431348 100431348 C A UHRF1BP1L 3'UTR 0.17 TCGA-85-A50Z-01 12 101018180 101018180 C G GAS2L3 Missense_Mutation p.L533V 0.15 tolerated(0.29) benign(0.001) TCGA-85-A50Z-01 12 102067360 102067360 C A MYBPC1 Missense_Mutation p.D916E 0.12 tolerated(1) benign(0.003) TCGA-85-A50Z-01 12 109678972 109678972 C - ACACB Frame_Shift_Del p.R1637Afs*31 0.17 TCGA-85-A50Z-01 12 114832636 114832636 A G TBX5 Silent p.N191N 0.16 TCGA-85-A50Z-01 12 118627821 118627821 C G TAOK3 Intron 0.17 TCGA-85-A50Z-01 12 120800904 120800904 C A MSI1 Missense_Mutation p.G115V 0.09 deleterious(0) probably_damaging(0.999) TCGA-85-A50Z-01 12 124177237 124177237 G T TCTN2 Missense_Mutation p.A356S 0.16 tolerated(0.17) benign(0.378) TCGA-85-A50Z-01 12 124177238 124177238 C T TCTN2 Missense_Mutation p.A356V 0.16 tolerated(0.17) benign(0.072) TCGA-85-A50Z-01 12 130921423 130921423 G T RIMBP2 Silent p.A673A 0.21 TCGA-85-A50Z-01 12 15699539 15699539 A G PTPRO Missense_Mutation p.K734R 0.13 tolerated(0.1) benign(0.16) TCGA-85-A50Z-01 12 1965253 1965253 C G CACNA2D4 Missense_Mutation p.D693H 0.17 tolerated(0.21) benign(0.078) TCGA-85-A50Z-01 12 21661451 21661451 G C GOLT1B Missense_Mutation p.L84F 0.18 tolerated(0.62) benign(0.009) TCGA-85-A50Z-01 12 23699291 23699291 C A SOX5 Missense_Mutation p.S519I 0.11 tolerated(0.18) benign(0.319) TCGA-85-A50Z-01 12 24737055 24737055 G T LINC00477 RNA 0.13 TCGA-85-A50Z-01 12 26714860 26714860 T G ITPR2 Silent p.P1552P 0.14 TCGA-85-A50Z-01 12 29596293 29596293 C A OVCH1 Splice_Site p.X1053_splice 0.14 TCGA-85-A50Z-01 12 40629461 40629461 C T LRRK2 Silent p.A127A 0.19 TCGA-85-A50Z-01 12 4705451 4705451 G T DYRK4 Missense_Mutation p.R140M 0.14 deleterious(0) probably_damaging(0.96) TCGA-85-A50Z-01 12 48483030 48483030 C T SENP1 Intron 0.17 TCGA-85-A50Z-01 12 48547170 48547170 A G ASB8 Missense_Mutation p.V37A 0.21 deleterious(0.01) possibly_damaging(0.822) TCGA-85-A50Z-01 12 52627244 52627244 A G KRT7 Missense_Mutation p.Y55C 0.21 tolerated(0.08) possibly_damaging(0.533) TCGA-85-A50Z-01 12 53776370 53776370 G C SP1 Missense_Mutation p.Q213H 0.23 deleterious(0.02) possibly_damaging(0.781) TCGA-85-A50Z-01 12 54070059 54070059 C A ATP5G2 5'UTR 0.30 TCGA-85-A50Z-01 12 55524481 55524481 C A OR9K2 Missense_Mutation p.P310H 0.20 deleterious(0) probably_damaging(0.998) TCGA-85-A50Z-01 12 55794822 55794822 C A OR6C65 Missense_Mutation p.S170R 0.15 deleterious_low_confidence(0.02) benign(0.005) TCGA-85-A50Z-01 12 57909882 57909882 C G MARS Intron 0.24 TCGA-85-A50Z-01 12 67701201 67701201 T A CAND1 Missense_Mutation p.V985E 0.14 deleterious(0) possibly_damaging(0.567) TCGA-85-A50Z-01 12 6787533 6787533 G A ZNF384 Missense_Mutation p.S149L 0.26 deleterious(0.05) possibly_damaging(0.459) TCGA-85-A50Z-01 12 69965181 69965181 T C FRS2 Silent p.L127L 0.20 TCGA-85-A50Z-01 12 7527094 7527094 C T CD163L1 Missense_Mutation p.R1118H 0.13 tolerated(0.86) benign(0.016) TCGA-85-A50Z-01 12 7640235 7640235 G T CD163 Silent p.T590T 0.15 TCGA-85-A50Z-01 12 7942319 7942319 T A NANOG Missense_Mutation p.S37T 0.16 tolerated(0.12) benign(0.032) TCGA-85-A50Z-01 12 80665442 80665442 G C OTOGL Missense_Mutation p.E836Q 0.16 tolerated(0.32) possibly_damaging(0.695) TCGA-85-A50Z-01 12 89918320 89918320 C A GALNT4 Missense_Mutation p.V3L 0.10 tolerated_low_confidence(0.4) benign(0) TCGA-85-A50Z-01 12 97345210 97345210 A T NEDD1 Missense_Mutation p.R611S 0.19 deleterious(0.04) benign(0.161) TCGA-85-A50Z-01 12 9747951 9747951 A T KLRB1 Silent p.S199S 0.14 TCGA-85-A50Z-01 12 9845527 9845527 A T CLEC2D Missense_Mutation p.Q154L 0.21 tolerated(0.66) benign(0.001) TCGA-85-A50Z-01 13 23912369 23912369 C A SACS Missense_Mutation p.L1882F 0.16 probably_damaging(0.997) TCGA-85-A50Z-01 13 25478074 25478074 C G CENPJ Missense_Mutation p.E939Q 0.25 deleterious(0.02) probably_damaging(0.968) TCGA-85-A50Z-01 13 31326252 31326252 C T ALOX5AP Silent p.C78C 0.17 TCGA-85-A50Z-01 13 36788727 36788727 C A SOHLH2 Intron 0.31 TCGA-85-A50Z-01 13 39425163 39425163 C A FREM2 Silent p.G2220G 0.21 TCGA-85-A50Z-01 13 96515885 96515885 T A UGGT2 Missense_Mutation p.K1214N 0.15 deleterious(0.04) benign(0.004) TCGA-85-A50Z-01 14 100375697 100375697 G T EML1 Missense_Mutation p.V393L 0.17 deleterious(0) probably_damaging(0.998) TCGA-85-A50Z-01 14 106091265 106091265 G A IGHG4 Missense_Mutation p.S210F 0.07 tolerated(0.08) benign(0.019) TCGA-85-A50Z-01 14 107218893 107218894 CC - IGHV3-74 Frame_Shift_Del p.G45Ifs*5 0.13 TCGA-85-A50Z-01 14 19563531 19563531 C A POTEG Missense_Mutation p.H349N 0.08 tolerated(0.32) benign(0.369) TCGA-85-A50Z-01 14 19988067 19988067 G T POTEM 3'UTR 0.27 TCGA-85-A50Z-01 14 20249039 20249039 G T OR4M1 Silent p.R186R 0.06 TCGA-85-A50Z-01 14 20851803 20851803 T A TEP1 Silent p.R1237R 0.23 TCGA-85-A50Z-01 14 22636334 22636334 C G TRAV30 Missense_Mutation p.L4V 0.18 benign(0.407) TCGA-85-A50Z-01 14 23391694 23391694 C T PRMT5 Missense_Mutation p.A552T 0.17 deleterious(0) benign(0.314) TCGA-85-A50Z-01 14 24434972 24434973 CT - DHRS4 Frame_Shift_Del p.L138Gfs*3 0.15 TCGA-85-A50Z-01 14 30046663 30046663 C A PRKD1 Splice_Site p.X841_splice 0.16 TCGA-85-A50Z-01 14 56133995 56133995 G T KTN1 Missense_Mutation p.A1072S 0.12 tolerated(0.65) benign(0.013) TCGA-85-A50Z-01 14 60069949 60069949 A T RTN1 Missense_Mutation p.V737E 0.16 deleterious(0) probably_damaging(0.998) TCGA-85-A50Z-01 14 60194319 60194319 T A RTN1 Missense_Mutation p.K361N 0.13 deleterious(0) possibly_damaging(0.611) TCGA-85-A50Z-01 14 60750088 60750088 G C PPM1A Missense_Mutation p.D296H 0.17 tolerated(0.37) possibly_damaging(0.452) TCGA-85-A50Z-01 14 63511949 63511950 - T KCNH5 5'UTR 0.16 TCGA-85-A50Z-01 14 64407334 64407334 G T SYNE2 Nonsense_Mutation p.E28* 0.22 TCGA-85-A50Z-01 14 64434476 64434476 T C SYNE2 Missense_Mutation p.L347S 0.18 possibly_damaging(0.67) TCGA-85-A50Z-01 14 77809703 77809703 A G TMED8 Missense_Mutation p.I193T 0.20 deleterious(0) possibly_damaging(0.877) TCGA-85-A50Z-01 14 88452892 88452892 C A GALC Missense_Mutation p.G128V 0.07 deleterious(0) probably_damaging(1) TCGA-85-A50Z-01 14 92472696 92472696 T C TRIP11 Missense_Mutation p.R542G 0.17 deleterious(0.01) benign(0.281) TCGA-85-A50Z-01 14 92959956 92959956 G A SLC24A4 Missense_Mutation p.C618Y 0.10 deleterious(0) probably_damaging(0.996) TCGA-85-A50Z-01 14 94039123 94039123 C A UNC79 Nonsense_Mutation p.Y500* 0.18 TCGA-85-A50Z-01 14 94067019 94067019 T A UNC79 Silent p.P982P 0.17 TCGA-85-A50Z-01 14 94067020 94067020 G T UNC79 Missense_Mutation p.A983S 0.19 tolerated(0.05) probably_damaging(0.997) TCGA-85-A50Z-01 15 25223012 25223012 C A SNRPN Missense_Mutation p.P170T 0.18 deleterious(0.02) unknown(0) TCGA-85-A50Z-01 15 25330390 25330390 G T SNORD116-18 5'Flank 0.16 TCGA-85-A50Z-01 15 27184535 27184535 G - GABRA5 Intron 0.13 TCGA-85-A50Z-01 15 30927718 30927718 G T ARHGAP11B Missense_Mutation p.R230I 0.17 deleterious_low_confidence(0.01) benign(0.061) TCGA-85-A50Z-01 15 31776322 31776322 C G OTUD7A Missense_Mutation p.E652D 0.14 deleterious(0.01) probably_damaging(0.978) TCGA-85-A50Z-01 15 32916390 32916390 G A ARHGAP11A Missense_Mutation p.G105D 0.14 deleterious(0.01) probably_damaging(0.987) TCGA-85-A50Z-01 15 38990561 38990561 G A C15orf53 Missense_Mutation p.E119K 0.12 tolerated_low_confidence(0.31) possibly_damaging(0.801) TCGA-85-A50Z-01 15 41689297 41689297 G C NDUFAF1 5'UTR 0.12 TCGA-85-A50Z-01 15 43827420 43827420 C A PPIP5K1 Nonsense_Mutation p.E1252* 0.16 TCGA-85-A50Z-01 15 48429052 48429052 C G SLC24A5 Missense_Mutation p.Q255E 0.17 tolerated(1) benign(0.001) TCGA-85-A50Z-01 15 51773533 51773533 G A DMXL2 Missense_Mutation p.P1924S 0.14 tolerated(0.4) benign(0.001) TCGA-85-A50Z-01 15 55931876 55931876 C T PRTG Missense_Mutation p.G763D 0.11 deleterious(0) probably_damaging(0.999) TCGA-85-A50Z-01 15 62942295 62942295 G A TLN2 Missense_Mutation p.G50E 0.14 deleterious(0) possibly_damaging(0.882) TCGA-85-A50Z-01 15 65551710 65551710 T C PARP16 3'UTR 0.16 TCGA-85-A50Z-01 15 70960649 70960649 A T UACA Missense_Mutation p.L792I 0.19 deleterious(0.04) probably_damaging(0.997) TCGA-85-A50Z-01 15 71188227 71188227 G - LRRC49 Frame_Shift_Del p.G54Vfs*23 0.15 TCGA-85-A50Z-01 15 81636260 81636260 A T TMC3 Missense_Mutation p.F549I 0.21 deleterious(0.01) probably_damaging(0.978) TCGA-85-A50Z-01 15 83328188 83328188 C T AP3B2 3'UTR 0.12 TCGA-85-A50Z-01 15 83345356 83345356 T A AP3B2 Missense_Mutation p.I508F 0.20 deleterious(0) probably_damaging(0.937) TCGA-85-A50Z-01 15 88522529 88522529 C A NTRK3 Intron 0.07 TCGA-85-A50Z-01 15 89421347 89421347 C A HAPLN3 Missense_Mutation p.A313S 0.16 deleterious(0.02) probably_damaging(1) TCGA-85-A50Z-01 15 90176068 90176068 G A KIF7 Missense_Mutation p.R960C 0.18 deleterious(0) possibly_damaging(0.893) TCGA-85-A50Z-01 15 99467771 99467771 G T IGF1R Silent p.V880V 0.10 TCGA-85-A50Z-01 16 15818537 15818537 G T MYH11 Missense_Mutation p.N1368K 0.19 benign(0.345) TCGA-85-A50Z-01 16 15841513 15841513 C A MYH11 Silent p.L782L 0.14 TCGA-85-A50Z-01 16 20373865 20373865 A G PDILT Missense_Mutation p.L426P 0.10 deleterious(0) probably_damaging(0.942) TCGA-85-A50Z-01 16 21812090 21812090 G A RRN3P1 RNA 0.20 TCGA-85-A50Z-01 16 239148 239148 A G LUC7L 3'UTR 0.20 TCGA-85-A50Z-01 16 27225031 27225031 G A KDM8 Silent p.L246L 0.14 TCGA-85-A50Z-01 16 28518137 28518137 G T IL27 5'UTR 0.16 TCGA-85-A50Z-01 16 32891001 32891001 G T SLC6A10P RNA 0.21 TCGA-85-A50Z-01 16 4810502 4810502 C A ZNF500 Nonsense_Mutation p.E251* 0.17 TCGA-85-A50Z-01 16 54145814 54145814 A - FTO Frame_Shift_Del p.A503Qfs*50 0.16 TCGA-85-A50Z-01 16 56670765 56670765 C A MT1M 3'Flank 0.12 TCGA-85-A50Z-01 16 57246955 57246955 T A RSPRY1 Silent p.P196P 0.16 TCGA-85-A50Z-01 16 57416781 57416781 G A CX3CL1 Missense_Mutation p.G344E 0.17 deleterious(0) probably_damaging(0.999) TCGA-85-A50Z-01 16 57689347 57689347 C G GPR56 Missense_Mutation p.L269V 0.21 deleterious(0.03) possibly_damaging(0.656) TCGA-85-A50Z-01 16 66847601 66847601 C A NAE1 Splice_Site p.X301_splice 0.22 TCGA-85-A50Z-01 16 67200487 67200487 T G HSF4 Silent p.L196L 0.18 TCGA-85-A50Z-01 16 74443528 74443528 C A CLEC18B Missense_Mutation p.C417F 0.05 deleterious_low_confidence(0) probably_damaging(1) TCGA-85-A50Z-01 16 857568 857568 C A PRR25 Missense_Mutation p.P189T 0.35 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-85-A50Z-01 16 87743082 87743082 C A KLHDC4 Silent p.R412R 0.30 TCGA-85-A50Z-01 16 87743083 87743083 C A KLHDC4 Missense_Mutation p.R412L 0.30 tolerated(0.3) benign(0.002) TCGA-85-A50Z-01 16 89598386 89598386 G A SPG7 Silent p.G354G 0.16 TCGA-85-A50Z-01 17 10399441 10399441 G C MYH1 Silent p.L1665L 0.25 TCGA-85-A50Z-01 17 10426926 10426926 G T MYH2 Silent p.R1787R 0.15 TCGA-85-A50Z-01 17 12666904 12666904 G T MYOCD Silent p.L968L 0.13 TCGA-85-A50Z-01 17 21731640 21731640 C - UBBP4 3'UTR 0.25 TCGA-85-A50Z-01 17 32598785 32598785 G T CCL7 Missense_Mutation p.K88N 0.15 tolerated(0.07) benign(0.072) TCGA-85-A50Z-01 17 46867430 46867430 C A TTLL6 Missense_Mutation p.L421F 0.41 deleterious(0) probably_damaging(0.999) TCGA-85-A50Z-01 17 5087000 5087000 T C ZNF594 Missense_Mutation p.I184M 0.15 deleterious(0.04) probably_damaging(0.944) TCGA-85-A50Z-01 17 6606413 6606413 C A SLC13A5 Missense_Mutation p.D198Y 0.12 tolerated(0.08) benign(0.098) TCGA-85-A50Z-01 17 66366597 66366597 C G ARSG Missense_Mutation p.P305R 0.20 deleterious(0) benign(0.356) TCGA-85-A50Z-01 17 67014597 67014597 T C ABCA9 Silent p.Q908Q 0.18 TCGA-85-A50Z-01 17 71389806 71389806 G T SDK2 Missense_Mutation p.T1264N 0.16 deleterious(0.03) possibly_damaging(0.598) TCGA-85-A50Z-01 17 72305573 72305573 A T DNAI2 Intron 0.30 TCGA-85-A50Z-01 17 74013980 74013980 G A EVPL Missense_Mutation p.S517L 0.43 deleterious(0.03) benign(0.014) TCGA-85-A50Z-01 17 7577551 7577551 C T TP53 Missense_Mutation p.G244S 0.15 deleterious(0) probably_damaging(1) TCGA-85-A50Z-01 18 116841 116841 G T ROCK1P1 Splice_Site 0.25 TCGA-85-A50Z-01 18 15325675 15325675 C A RNU6-721P 5'Flank 0.22 TCGA-85-A50Z-01 18 21053586 21053586 G T RIOK3 Missense_Mutation p.A337S 0.16 tolerated(0.61) benign(0.004) TCGA-85-A50Z-01 18 25532079 25532079 T A CDH2 3'UTR 0.21 TCGA-85-A50Z-01 18 3879476 3879476 G T DLGAP1 Missense_Mutation p.S198Y 0.20 deleterious(0.04) benign(0.069) TCGA-85-A50Z-01 18 56586801 56586801 G A ZNF532 Missense_Mutation p.V428I 0.14 tolerated(0.13) benign(0.089) TCGA-85-A50Z-01 18 67872522 67872522 C A RTTN Missense_Mutation p.A21S 0.18 tolerated(0.35) benign(0.385) TCGA-85-A50Z-01 18 7231754 7231754 G T LRRC30 Missense_Mutation p.Q206H 0.15 deleterious(0.02) possibly_damaging(0.907) TCGA-85-A50Z-01 18 9549273 9549273 G C PPP4R1 Missense_Mutation p.L871V 0.18 deleterious(0.01) probably_damaging(0.986) TCGA-85-A50Z-01 19 10224918 10224918 C A PPAN-P2RY11 Missense_Mutation p.A630E 0.19 deleterious_low_confidence(0) possibly_damaging(0.74) TCGA-85-A50Z-01 19 11409012 11409012 G C TSPAN16 Missense_Mutation p.L88F 0.12 deleterious(0.03) possibly_damaging(0.774) TCGA-85-A50Z-01 19 13368211 13368211 C G CACNA1A Missense_Mutation p.E1515Q 0.17 possibly_damaging(0.859) TCGA-85-A50Z-01 19 1483683 1483683 T A PCSK4 Missense_Mutation p.R453W 0.20 deleterious(0) possibly_damaging(0.753) TCGA-85-A50Z-01 19 15807799 15807799 A T CYP4F12 Silent p.P493P 0.15 TCGA-85-A50Z-01 19 16040343 16040343 C A CYP4F11 Missense_Mutation p.K89N 0.15 tolerated(0.31) benign(0.197) TCGA-85-A50Z-01 19 17877604 17877604 C G FCHO1 Silent p.L107L 0.13 TCGA-85-A50Z-01 19 17877613 17877613 C G FCHO1 Missense_Mutation p.H110Q 0.20 deleterious(0.03) benign(0.011) TCGA-85-A50Z-01 19 19576305 19576305 G C GATAD2A Missense_Mutation p.E51Q 0.17 tolerated(0.18) possibly_damaging(0.754) TCGA-85-A50Z-01 19 20116827 20116827 T C ZNF682 Missense_Mutation p.N495S 0.15 tolerated(0.67) benign(0) TCGA-85-A50Z-01 19 20807757 20807757 C A ZNF626 Missense_Mutation p.G309V 0.20 deleterious(0.01) probably_damaging(0.975) TCGA-85-A50Z-01 19 20976669 20976669 G C ZNF66 Missense_Mutation p.V71L 0.17 tolerated(0.08) benign(0.01) TCGA-85-A50Z-01 19 21300477 21300477 G T ZNF714 Missense_Mutation p.G336V 0.14 deleterious(0) probably_damaging(0.978) TCGA-85-A50Z-01 19 21475921 21475921 A T ZNF708 3'UTR 0.28 TCGA-85-A50Z-01 19 2426074 2426074 C G TMPRSS9 Missense_Mutation p.H1056Q 0.11 tolerated(0.1) benign(0.146) TCGA-85-A50Z-01 19 287524 287524 C A PPAP2C Silent p.V165V 0.16 TCGA-85-A50Z-01 19 31048169 31048169 G T ZNF536 3'UTR 0.10 TCGA-85-A50Z-01 19 31767923 31767923 C G TSHZ3 Missense_Mutation p.D926H 0.20 deleterious(0.01) benign(0.059) TCGA-85-A50Z-01 19 36018808 36018808 C A SBSN Missense_Mutation p.V126F 0.21 deleterious(0.01) probably_damaging(0.931) TCGA-85-A50Z-01 19 3778992 3778992 C A MATK Missense_Mutation p.G400W 0.11 deleterious(0.02) probably_damaging(0.972) TCGA-85-A50Z-01 19 38876071 38876071 C T GGN Missense_Mutation p.V611I 0.10 deleterious_low_confidence(0.02) probably_damaging(0.986) TCGA-85-A50Z-01 19 38991278 38991278 G C RYR1 Silent p.R2452R 0.17 TCGA-85-A50Z-01 19 39860673 39860673 A G SAMD4B Missense_Mutation p.D192G 0.19 tolerated(0.12) benign(0.15) TCGA-85-A50Z-01 19 39905784 39905784 C A PLEKHG2 Missense_Mutation p.H88N 0.20 deleterious_low_confidence(0.01) benign(0.118) TCGA-85-A50Z-01 19 42473024 42473024 G C ATP1A3 Missense_Mutation p.A924G 0.15 tolerated(0.15) probably_damaging(0.999) TCGA-85-A50Z-01 19 44833687 44833687 C A ZNF112 Missense_Mutation p.S214I 0.15 deleterious(0.01) benign(0.067) TCGA-85-A50Z-01 19 45818762 45818762 G T CKM Missense_Mutation p.R148S 0.25 deleterious(0.03) probably_damaging(0.976) TCGA-85-A50Z-01 19 49340566 49340566 G C PLEKHA4 Missense_Mutation p.L774V 0.06 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-85-A50Z-01 19 49674941 49674941 G A TRPM4 Missense_Mutation p.G322E 0.11 tolerated(1) benign(0.118) TCGA-85-A50Z-01 19 50099088 50099088 C A PRR12 Missense_Mutation p.P499Q 0.14 probably_damaging(0.946) TCGA-85-A50Z-01 19 51022150 51022150 C A LRRC4B Missense_Mutation p.D274Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-85-A50Z-01 19 51217194 51217194 G T SHANK1 Missense_Mutation p.T218K 0.14 possibly_damaging(0.901) TCGA-85-A50Z-01 19 52115526 52115526 G T SIGLEC5 Silent p.A538A 0.14 TCGA-85-A50Z-01 19 52222486 52222486 C A HAS1 Silent p.A225A 0.11 TCGA-85-A50Z-01 19 54695587 54695587 A C TSEN34 Missense_Mutation p.K87Q 0.15 tolerated(0.49) benign(0.003) TCGA-85-A50Z-01 19 55327945 55327945 C A KIR3DL1 5'UTR 0.30 TCGA-85-A50Z-01 19 55327946 55327946 C A KIR3DL1 5'UTR 0.30 TCGA-85-A50Z-01 19 55447643 55447643 G T NLRP7 Missense_Mutation p.N762K 0.12 tolerated(0.25) benign(0.033) TCGA-85-A50Z-01 19 55494336 55494336 A T NLRP2 Missense_Mutation p.T424S 0.10 tolerated(0.09) probably_damaging(0.997) TCGA-85-A50Z-01 19 56173950 56173950 A T U2AF2 Missense_Mutation p.Q190L 0.14 deleterious(0) probably_damaging(0.958) TCGA-85-A50Z-01 19 56379228 56379228 C A NLRP4 Silent p.V780V 0.14 TCGA-85-A50Z-01 19 56407468 56407468 A T NLRP13 Missense_Mutation p.L992Q 0.17 deleterious(0) possibly_damaging(0.894) TCGA-85-A50Z-01 19 56538559 56538559 C T NLRP5 Silent p.P320P 0.17 TCGA-85-A50Z-01 19 57133984 57133984 C T ZNF71 Silent p.C443C 0.14 TCGA-85-A50Z-01 19 57326535 57326535 G T PEG3 Nonsense_Mutation p.S1092* 0.15 TCGA-85-A50Z-01 19 57640663 57640663 G T USP29 Missense_Mutation p.R207M 0.16 tolerated(0.09) benign(0.053) TCGA-85-A50Z-01 19 57665753 57665753 T C DUXA 3'UTR 0.07 TCGA-85-A50Z-01 19 58018041 58018041 G T ZNF773 Missense_Mutation p.C193F 0.15 deleterious(0.03) probably_damaging(0.975) TCGA-85-A50Z-01 19 58438318 58438318 C T ZNF418 Missense_Mutation p.G411R 0.13 tolerated(0.08) possibly_damaging(0.618) TCGA-85-A50Z-01 19 58511244 58511244 C A ZNF606 Missense_Mutation p.A37S 0.15 tolerated(0.35) benign(0.001) TCGA-85-A50Z-01 19 8595158 8595158 G T MYO1F Silent p.P750P 0.16 TCGA-85-A50Z-01 19 9006663 9006663 C A MUC16 Silent p.T13195T 0.15 TCGA-85-A50Z-01 19 9046970 9046970 C T MUC16 Missense_Mutation p.G11554E 0.21 benign(0.016) TCGA-85-A50Z-01 19 9325002 9325002 C A OR7D4 Missense_Mutation p.G171V 0.11 tolerated(0.15) benign(0.046) TCGA-85-A50Z-01 1 100606058 100606058 C T TRMT13 Silent p.H163H 0.15 TCGA-85-A50Z-01 1 104114351 104114351 T C AMY2B Missense_Mutation p.C43R 0.13 deleterious(0) probably_damaging(1) TCGA-85-A50Z-01 1 116563495 116563495 G T SLC22A15 Missense_Mutation p.W196L 0.12 deleterious(0.04) possibly_damaging(0.771) TCGA-85-A50Z-01 1 118065602 118065602 C T MAN1A2 3'UTR 0.10 TCGA-85-A50Z-01 1 118492705 118492705 G T WDR3 Silent p.V566V 0.16 TCGA-85-A50Z-01 1 120285489 120285489 G T PHGDH Silent p.L423L 0.12 TCGA-85-A50Z-01 1 149939398 149939398 G A OTUD7B Missense_Mutation p.S108F 0.12 deleterious(0) probably_damaging(0.998) TCGA-85-A50Z-01 1 150529988 150529988 T C ADAMTSL4 Missense_Mutation p.F689S 0.10 deleterious(0) probably_damaging(0.98) TCGA-85-A50Z-01 1 150789597 150789597 C A ARNT Missense_Mutation p.D554Y 0.14 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-85-A50Z-01 1 151340699 151340699 C A SELENBP1 Nonsense_Mutation p.G153* 0.16 TCGA-85-A50Z-01 1 151495941 151495941 G T CGN Missense_Mutation p.G391V 0.16 deleterious(0.04) benign(0.035) TCGA-85-A50Z-01 1 153635183 153635183 C T ILF2 Missense_Mutation p.S337N 0.17 tolerated(0.23) benign(0.021) TCGA-85-A50Z-01 1 153737535 153737535 G A INTS3 Missense_Mutation p.A696T 0.17 deleterious(0.02) possibly_damaging(0.78) TCGA-85-A50Z-01 1 154574268 154574268 T C ADAR Missense_Mutation p.T284A 0.32 tolerated(0.33) benign(0.001) TCGA-85-A50Z-01 1 155290699 155290699 C - RUSC1 5'Flank 0.21 TCGA-85-A50Z-01 1 156046843 156046844 - C MEX3A Frame_Shift_Ins p.D362Gfs*27 0.21 TCGA-85-A50Z-01 1 156339124 156339124 C A RHBG Silent p.V28V 0.20 TCGA-85-A50Z-01 1 156899219 156899219 T C LRRC71 Missense_Mutation p.W382R 0.10 tolerated(0.22) benign(0.013) TCGA-85-A50Z-01 1 158648288 158648288 G T SPTA1 Missense_Mutation p.Q239K 0.28 tolerated(0.38) possibly_damaging(0.517) TCGA-85-A50Z-01 1 161132715 161132715 G T USP21 Missense_Mutation p.Q300H 0.14 deleterious(0) probably_damaging(0.999) TCGA-85-A50Z-01 1 17313724 17313724 T C ATP13A2 Missense_Mutation p.D967G 0.17 deleterious(0) probably_damaging(1) TCGA-85-A50Z-01 1 176668494 176668494 T C PAPPA2 Missense_Mutation p.F1002S 0.20 deleterious(0) possibly_damaging(0.496) TCGA-85-A50Z-01 1 176709234 176709234 C G PAPPA2 Silent p.G1351G 0.15 TCGA-85-A50Z-01 1 192153677 192153677 G C RGS18 Missense_Mutation p.W234S 0.12 deleterious(0) probably_damaging(0.999) TCGA-85-A50Z-01 1 20066407 20066407 G A TMCO4 Silent p.A363A 0.19 TCGA-85-A50Z-01 1 201681997 201681997 G A NAV1 Silent p.Q270Q 0.15 TCGA-85-A50Z-01 1 206145486 206145486 C T FAM72A Missense_Mutation p.P88L 0.15 deleterious(0) probably_damaging(1) TCGA-85-A50Z-01 1 210334183 210334183 C T SYT14 Silent p.V552V 0.15 TCGA-85-A50Z-01 1 211263906 211263906 T G KCNH1 Missense_Mutation p.K146T 0.14 deleterious(0.05) benign(0.146) TCGA-85-A50Z-01 1 211276897 211276897 C A KCNH1 Missense_Mutation p.R84L 0.14 deleterious(0.04) benign(0.231) TCGA-85-A50Z-01 1 212118234 212118234 T A INTS7 Silent p.V831V 0.18 TCGA-85-A50Z-01 1 213178698 213178698 C A ANGEL2 Missense_Mutation p.V271L 0.17 tolerated(0.16) probably_damaging(0.98) TCGA-85-A50Z-01 1 215848851 215848851 G T USH2A Silent p.A4134A 0.14 TCGA-85-A50Z-01 1 217604337 217604337 C A GPATCH2 3'UTR 0.16 TCGA-85-A50Z-01 1 228404873 228404873 A G OBSCN Missense_Mutation p.Q846R 0.15 benign(0.018) TCGA-85-A50Z-01 1 229675328 229675328 G A ABCB10 Missense_Mutation p.S405F 0.11 deleterious(0.01) probably_damaging(0.994) TCGA-85-A50Z-01 1 231125940 231125940 G T ARV1 Missense_Mutation p.A127S 0.17 tolerated(0.22) benign(0.026) TCGA-85-A50Z-01 1 237608735 237608735 G T RYR2 Missense_Mutation p.G402V 0.23 possibly_damaging(0.642) TCGA-85-A50Z-01 1 238090386 238090386 G T RP11-193H5.1 RNA 0.17 TCGA-85-A50Z-01 1 238090387 238090387 G T RP11-193H5.1 RNA 0.17 TCGA-85-A50Z-01 1 242383316 242383316 C G PLD5 Missense_Mutation p.G237R 0.13 deleterious(0.01) benign(0.329) TCGA-85-A50Z-01 1 24392401 24392401 C T MYOM3 Missense_Mutation p.G1172R 0.19 tolerated(0.08) possibly_damaging(0.846) TCGA-85-A50Z-01 1 245020153 245020153 T A HNRNPU Silent p.A540A 0.14 TCGA-85-A50Z-01 1 247769028 247769028 C A OR2G3 Silent p.I47I 0.09 TCGA-85-A50Z-01 1 248525583 248525583 G A OR2T4 Missense_Mutation p.C234Y 0.13 deleterious(0.01) possibly_damaging(0.651) TCGA-85-A50Z-01 1 248637486 248637486 G C OR2T3 Missense_Mutation p.V279L 0.08 deleterious(0.03) benign(0.003) TCGA-85-A50Z-01 1 248685113 248685113 C A OR2G6 Missense_Mutation p.H56N 0.15 deleterious(0.01) benign(0.031) TCGA-85-A50Z-01 1 248737224 248737224 C G OR2T34 Missense_Mutation p.V279L 0.26 deleterious(0.03) benign(0.003) TCGA-85-A50Z-01 1 248737459 248737459 A G OR2T34 Silent p.Y200Y 0.29 TCGA-85-A50Z-01 1 248789857 248789857 C A OR2T11 Missense_Mutation p.L191F 0.11 deleterious(0.04) probably_damaging(1) TCGA-85-A50Z-01 1 32205019 32205019 G A BAI2 Silent p.G795G 0.32 TCGA-85-A50Z-01 1 35369929 35369929 C A DLGAP3 Silent p.G352G 0.21 TCGA-85-A50Z-01 1 35654859 35654859 C A SFPQ Missense_Mutation p.D514Y 0.13 deleterious(0) probably_damaging(0.921) TCGA-85-A50Z-01 1 37315911 37315911 C A GRIK3 Splice_Site p.X442_splice 0.17 TCGA-85-A50Z-01 1 37315912 37315912 C A GRIK3 Silent p.L442L 0.18 TCGA-85-A50Z-01 1 38187432 38187432 G T EPHA10 Missense_Mutation p.S682R 0.29 deleterious(0) possibly_damaging(0.559) TCGA-85-A50Z-01 1 41949836 41949836 A T EDN2 Missense_Mutation p.S35T 0.09 tolerated(0.37) benign(0.065) TCGA-85-A50Z-01 1 45307700 45307700 C G PTCH2 Silent p.G28G 0.11 TCGA-85-A50Z-01 1 48703410 48703410 C A SLC5A9 Missense_Mutation p.S476Y 0.26 deleterious(0) probably_damaging(0.964) TCGA-85-A50Z-01 1 53990535 53990535 C G GLIS1 Missense_Mutation p.G328A 0.15 deleterious(0) probably_damaging(0.995) TCGA-85-A50Z-01 1 67288192 67288192 G T WDR78 Missense_Mutation p.P783H 0.11 deleterious(0) probably_damaging(0.999) TCGA-85-A50Z-01 1 67390358 67390358 G A WDR78 Nonsense_Mutation p.Q53* 0.18 TCGA-85-A50Z-01 1 71418695 71418695 A T PTGER3 Missense_Mutation p.H384Q 0.19 tolerated_low_confidence(0.38) benign(0) TCGA-85-A50Z-01 1 71534970 71534970 C A ZRANB2 Silent p.G253G 0.15 TCGA-85-A50Z-01 1 75677224 75677224 C A SLC44A5 Missense_Mutation p.G659V 0.09 deleterious(0) probably_damaging(0.989) TCGA-85-A50Z-01 1 78031284 78031284 T A ZZZ3 3'UTR 0.13 TCGA-85-A50Z-01 1 82409415 82409415 G T LPHN2 Missense_Mutation p.R387L 0.12 deleterious(0) possibly_damaging(0.854) TCGA-85-A50Z-01 20 30115371 30115371 T A HM13 Missense_Mutation p.Y90N 0.12 deleterious(0) probably_damaging(0.983) TCGA-85-A50Z-01 20 30667655 30667655 G T HCK Missense_Mutation p.M169I 0.13 deleterious(0.04) benign(0.201) TCGA-85-A50Z-01 20 31022776 31022776 C T ASXL1 Missense_Mutation p.T754I 0.14 deleterious_low_confidence(0) possibly_damaging(0.735) TCGA-85-A50Z-01 20 33345827 33345827 G A NCOA6 Missense_Mutation p.P242S 0.11 benign(0.001) TCGA-85-A50Z-01 20 33632500 33632500 C T TRPC4AP Missense_Mutation p.D225N 0.23 tolerated(0.18) benign(0.11) TCGA-85-A50Z-01 20 34021588 34021588 C T GDF5 3'UTR 0.12 TCGA-85-A50Z-01 20 34778585 34778585 T C EPB41L1 Missense_Mutation p.M389T 0.17 deleterious(0) possibly_damaging(0.796) TCGA-85-A50Z-01 20 35060146 35060146 C A DLGAP4 Missense_Mutation p.P9H 0.16 deleterious(0.01) possibly_damaging(0.861) TCGA-85-A50Z-01 20 57415781 57415781 C G RP4-806M20.3 5'Flank 0.12 TCGA-85-A50Z-01 20 61296531 61296531 G A SLCO4A1 Intron 0.17 TCGA-85-A50Z-01 20 61299183 61299183 G T SLCO4A1 Missense_Mutation p.G520V 0.19 deleterious(0.02) possibly_damaging(0.742) TCGA-85-A50Z-01 20 62421977 62421977 T G ZBTB46 Missense_Mutation p.H45P 0.10 deleterious(0) probably_damaging(0.999) TCGA-85-A50Z-01 21 11029657 11029657 C T BAGE2 RNA 0.04 TCGA-85-A50Z-01 21 34123488 34123488 C A PAXBP1 Missense_Mutation p.D517Y 0.22 deleterious(0) probably_damaging(0.989) TCGA-85-A50Z-01 21 37618211 37618211 C G DOPEY2 Silent p.L1311L 0.15 TCGA-85-A50Z-01 21 46066428 46066428 A T KRTAP10-11 Missense_Mutation p.Q18L 0.30 deleterious(0) unknown(0) TCGA-85-A50Z-01 21 46066429 46066429 G A KRTAP10-11 Silent p.Q18Q 0.29 TCGA-85-A50Z-01 21 47642587 47642587 G A LSS Missense_Mutation p.R129W 0.08 deleterious(0) probably_damaging(1) TCGA-85-A50Z-01 22 28193584 28193584 C A MN1 Missense_Mutation p.G983V 0.17 benign(0.024) TCGA-85-A50Z-01 22 31524521 31524521 G T INPP5J Missense_Mutation p.G324C 0.19 deleterious(0) probably_damaging(0.982) TCGA-85-A50Z-01 22 42206276 42206276 G A CCDC134 Silent p.Q97Q 0.12 TCGA-85-A50Z-01 2 102000120 102000120 G A CREG2 Silent p.G162G 0.21 TCGA-85-A50Z-01 2 108507196 108507196 C G RGPD4 3'UTR 0.12 TCGA-85-A50Z-01 2 118854176 118854176 G C INSIG2 Missense_Mutation p.G15A 0.13 tolerated_low_confidence(0.16) benign(0.007) TCGA-85-A50Z-01 2 119727833 119727833 G A MARCO Missense_Mutation p.V115I 0.14 tolerated(0.5) possibly_damaging(0.785) TCGA-85-A50Z-01 2 1251187 1251187 C A SNTG2 Missense_Mutation p.P326Q 0.15 tolerated(0.06) possibly_damaging(0.491) TCGA-85-A50Z-01 2 130877642 130877642 C T POTEF Nonsense_Mutation p.W149* 0.09 TCGA-85-A50Z-01 2 132020981 132020981 G A POTEE Silent p.L651L 0.18 TCGA-85-A50Z-01 2 143787209 143787209 T - KYNU Frame_Shift_Del p.F306Lfs*17 0.10 TCGA-85-A50Z-01 2 153003694 153003694 A G STAM2 Silent p.F143F 0.15 TCGA-85-A50Z-01 2 153526888 153526888 G A PRPF40A Missense_Mutation p.A496V 0.18 deleterious(0) possibly_damaging(0.483) TCGA-85-A50Z-01 2 162879281 162879281 G C DPP4 Missense_Mutation p.T351S 0.12 tolerated(0.23) benign(0.019) TCGA-85-A50Z-01 2 166231369 166231369 T C SCN2A Missense_Mutation p.Y1383H 0.22 tolerated(0.07) benign(0.21) TCGA-85-A50Z-01 2 169789039 169789039 T A ABCB11 Missense_Mutation p.I1021F 0.14 tolerated(1) benign(0.084) TCGA-85-A50Z-01 2 170038074 170038074 C T LRP2 Missense_Mutation p.M3351I 0.21 probably_damaging(0.987) TCGA-85-A50Z-01 2 170131618 170131618 G T LRP2 Missense_Mutation p.P635T 0.17 benign(0.178) TCGA-85-A50Z-01 2 178528650 178528650 C T PDE11A Missense_Mutation p.E864K 0.17 deleterious(0.03) probably_damaging(0.973) TCGA-85-A50Z-01 2 179395697 179395697 A G TTN Silent p.T35215T 0.16 TCGA-85-A50Z-01 2 179498357 179498357 C T TTN Silent p.V14243V 0.12 TCGA-85-A50Z-01 2 179593676 179593676 G T TTN Silent p.T6363T 0.19 TCGA-85-A50Z-01 2 179594425 179594425 G T TTN Silent p.G6185G 0.15 TCGA-85-A50Z-01 2 179640316 179640316 C T TTN Missense_Mutation p.G2092E 0.16 TCGA-85-A50Z-01 2 183731099 183731099 G T FRZB Missense_Mutation p.T61N 0.10 deleterious(0) probably_damaging(0.994) TCGA-85-A50Z-01 2 1906868 1906868 G - MYT1L Frame_Shift_Del p.G672Dfs*30 0.14 TCGA-85-A50Z-01 2 197504492 197504492 T C CCDC150 Translation_Start_Site p.M1? 0.14 deleterious_low_confidence(0) benign(0.051) TCGA-85-A50Z-01 2 206562325 206562325 G T NRP2 Missense_Mutation p.G44V 0.19 deleterious(0) probably_damaging(0.986) TCGA-85-A50Z-01 2 207625704 207625704 T C MDH1B Missense_Mutation p.E19G 0.15 deleterious(0) probably_damaging(0.996) TCGA-85-A50Z-01 2 209101785 209101785 C A IDH1 3'UTR 0.27 TCGA-85-A50Z-01 2 211455593 211455593 G A CPS1 Missense_Mutation p.A310T 0.09 tolerated(0.07) possibly_damaging(0.801) TCGA-85-A50Z-01 2 21229679 21229679 G T APOB Missense_Mutation p.A3354D 0.18 possibly_damaging(0.677) TCGA-85-A50Z-01 2 21232101 21232101 C G APOB Missense_Mutation p.V2547L 0.18 probably_damaging(0.978) TCGA-85-A50Z-01 2 21239517 21239517 C T APOB Silent p.A1042A 0.16 TCGA-85-A50Z-01 2 220290711 220290711 A G DES Silent p.%3D 0.11 TCGA-85-A50Z-01 2 224463882 224463882 G C SCG2 Missense_Mutation p.P40R 0.16 deleterious(0.01) probably_damaging(1) TCGA-85-A50Z-01 2 226378234 226378234 G T NYAP2 Silent p.S123S 0.17 TCGA-85-A50Z-01 2 226447405 226447405 G T NYAP2 Missense_Mutation p.Q424H 0.17 tolerated(0.29) possibly_damaging(0.771) TCGA-85-A50Z-01 2 228890127 228890127 C A SPHKAP Missense_Mutation p.D142Y 0.10 deleterious(0) benign(0.119) TCGA-85-A50Z-01 2 233244372 233244372 C A ALPP Silent p.S153S 0.14 TCGA-85-A50Z-01 2 234581264 234581264 A G UGT1A9 Silent p.L228L 0.15 TCGA-85-A50Z-01 2 26332766 26332766 C G RAB10 Missense_Mutation p.N106K 0.15 deleterious(0.02) benign(0.393) TCGA-85-A50Z-01 2 26702396 26702396 C A OTOF Missense_Mutation p.G680W 0.19 deleterious(0) possibly_damaging(0.769) TCGA-85-A50Z-01 2 27121428 27121428 G T DPYSL5 Missense_Mutation p.D21Y 0.15 deleterious(0) probably_damaging(0.995) TCGA-85-A50Z-01 2 28467669 28467669 G T BRE Nonsense_Mutation p.E292* 0.11 TCGA-85-A50Z-01 2 29754890 29754890 C G ALK Missense_Mutation p.V349L 0.11 tolerated(0.31) probably_damaging(0.997) TCGA-85-A50Z-01 2 31133634 31133634 C A GALNT14 3'UTR 0.30 TCGA-85-A50Z-01 2 32875206 32875206 A G TTC27 Silent p.P182P 0.15 TCGA-85-A50Z-01 2 37473245 37473245 C G NDUFAF7 Missense_Mutation p.I281M 0.16 tolerated(0.05) possibly_damaging(0.873) TCGA-85-A50Z-01 2 47639616 47639616 A T MSH2 Missense_Mutation p.I237F 0.10 deleterious(0.01) possibly_damaging(0.839) TCGA-85-A50Z-01 2 71058137 71058137 A T CD207 3'UTR 0.22 TCGA-85-A50Z-01 2 74044018 74044018 C A C2orf78 Missense_Mutation p.R890S 0.13 deleterious(0) probably_damaging(0.977) TCGA-85-A50Z-01 2 79364403 79364403 C A REG1P RNA 0.16 TCGA-85-A50Z-01 2 80808885 80808885 C A CTNNA2 Missense_Mutation p.R650S 0.13 tolerated(0.11) benign(0.045) TCGA-85-A50Z-01 2 86737492 86737492 C G CHMP3 Missense_Mutation p.E162Q 0.23 deleterious(0) possibly_damaging(0.694) TCGA-85-A50Z-01 2 90122049 90122049 T A IGKV1D-17 Silent p.S89S 0.14 TCGA-85-A50Z-01 2 90260219 90260219 T G IGKV1D-8 Missense_Mutation p.Y108D 0.13 deleterious(0) probably_damaging(1) TCGA-85-A50Z-01 2 95953969 95953969 G T PROM2 Missense_Mutation p.R752L 0.17 deleterious(0.05) possibly_damaging(0.856) TCGA-85-A50Z-01 2 98737796 98737796 G A VWA3B Missense_Mutation p.A193T 0.08 deleterious(0.05) possibly_damaging(0.897) TCGA-85-A50Z-01 3 100374758 100374758 T C GPR128 Missense_Mutation p.V581A 0.19 deleterious(0.03) possibly_damaging(0.814) TCGA-85-A50Z-01 3 108818277 108818277 A T MORC1 Missense_Mutation p.F117L 0.27 deleterious(0.01) probably_damaging(0.995) TCGA-85-A50Z-01 3 112256693 112256693 T A ATG3 Missense_Mutation p.K185N 0.19 tolerated(0.22) benign(0.048) TCGA-85-A50Z-01 3 128706636 128706636 C G KIAA1257 Missense_Mutation p.V164L 0.16 tolerated(0.1) possibly_damaging(0.846) TCGA-85-A50Z-01 3 128706637 128706637 C T KIAA1257 Nonsense_Mutation p.W163* 0.16 TCGA-85-A50Z-01 3 128996210 128996210 G T COPG1 Silent p.V856V 0.14 TCGA-85-A50Z-01 3 130683862 130683862 A G ATP2C1 Missense_Mutation p.I399M 0.13 tolerated(0.36) benign(0.079) TCGA-85-A50Z-01 3 156763461 156763461 C G LEKR1 Silent p.P667P 0.29 TCGA-85-A50Z-01 3 164712173 164712173 C A SI Missense_Mutation p.W1571C 0.11 deleterious(0) probably_damaging(1) TCGA-85-A50Z-01 3 164724678 164724678 A G SI Silent p.L1444L 0.14 TCGA-85-A50Z-01 3 164735617 164735617 C A SI Nonsense_Mutation p.G1189* 0.29 TCGA-85-A50Z-01 3 172474798 172474798 T C ECT2 Missense_Mutation p.M110T 0.15 tolerated(1) benign(0.001) TCGA-85-A50Z-01 3 172533484 172533484 A G ECT2 Missense_Mutation p.K831E 0.08 deleterious(0.02) benign(0.41) TCGA-85-A50Z-01 3 179332829 179332829 G T NDUFB5 Missense_Mutation p.R65S 0.23 tolerated(0.37) benign(0.005) TCGA-85-A50Z-01 3 179399781 179399781 A T USP13 Missense_Mutation p.H95L 0.16 tolerated(0.35) benign(0.086) TCGA-85-A50Z-01 3 184020243 184020243 G A PSMD2 Missense_Mutation p.E264K 0.22 deleterious(0.04) benign(0.284) TCGA-85-A50Z-01 3 185316311 185316311 G T SENP2 Missense_Mutation p.R90L 0.36 deleterious(0.02) benign(0.331) TCGA-85-A50Z-01 3 185867839 185867839 T C DGKG 3'UTR 0.35 TCGA-85-A50Z-01 3 190127819 190127819 G T CLDN16 Missense_Mutation p.R304S 0.28 deleterious(0) probably_damaging(0.976) TCGA-85-A50Z-01 3 193854434 193854434 G C HES1 Missense_Mutation p.R46P 0.24 deleterious(0) probably_damaging(1) TCGA-85-A50Z-01 3 194392975 194392975 A G LSG1 5'UTR 0.36 TCGA-85-A50Z-01 3 46307280 46307280 C G CCR3 Missense_Mutation p.P232A 0.15 deleterious(0) probably_damaging(1) TCGA-85-A50Z-01 3 49094919 49094919 C A QRICH1 Silent p.T238T 0.19 TCGA-85-A50Z-01 3 52558168 52558168 C T STAB1 Missense_Mutation p.P2532L 0.16 deleterious(0) probably_damaging(0.989) TCGA-85-A50Z-01 3 64084971 64084971 C A PRICKLE2 Missense_Mutation p.R764L 0.18 tolerated(0.3) possibly_damaging(0.554) TCGA-85-A50Z-01 3 73432840 73432840 G A PDZRN3 Silent p.T959T 0.22 TCGA-85-A50Z-01 3 7620910 7620910 T C GRM7 Missense_Mutation p.Y773H 0.22 deleterious(0) probably_damaging(0.999) TCGA-85-A50Z-01 3 85961672 85961672 A T CADM2 Missense_Mutation p.M220L 0.19 tolerated(0.06) benign(0.003) TCGA-85-A50Z-01 3 97661262 97661262 T C CRYBG3 Silent p.S985S 0.12 TCGA-85-A50Z-01 4 103184260 103184260 T C SLC39A8 Missense_Mutation p.T442A 0.16 deleterious(0) probably_damaging(0.923) TCGA-85-A50Z-01 4 103228656 103228656 G A SLC39A8 Silent p.T163T 0.20 TCGA-85-A50Z-01 4 109670416 109670416 G A ETNPPL Missense_Mutation p.S302F 0.20 deleterious(0.01) possibly_damaging(0.786) TCGA-85-A50Z-01 4 114823399 114823399 T G ARSJ 3'UTR 0.14 TCGA-85-A50Z-01 4 115767148 115767148 A G NDST4 Missense_Mutation p.M649T 0.20 deleterious(0) probably_damaging(0.976) TCGA-85-A50Z-01 4 124323776 124323776 T C SPRY1 3'UTR 0.16 TCGA-85-A50Z-01 4 126241740 126241740 G T FAT4 Missense_Mutation p.A1392S 0.14 probably_damaging(0.998) TCGA-85-A50Z-01 4 155505868 155505868 C - FGA Frame_Shift_Del p.G670Efs*5 0.19 TCGA-85-A50Z-01 4 164394837 164394837 C T TKTL2 Missense_Mutation p.R17Q 0.23 tolerated(0.54) benign(0.093) TCGA-85-A50Z-01 4 164506949 164506949 G T MARCH1 Silent p.L125L 0.14 TCGA-85-A50Z-01 4 173269836 173269836 G C GALNTL6 Missense_Mutation p.E183D 0.22 tolerated(1) benign(0.001) TCGA-85-A50Z-01 4 186180117 186180117 G T SNX25 Silent p.L46L 0.19 TCGA-85-A50Z-01 4 187192912 187192912 G T F11 Missense_Mutation p.D69Y 0.19 deleterious(0) probably_damaging(0.978) TCGA-85-A50Z-01 4 36214878 36214878 A G ARAP2 Missense_Mutation p.L343P 0.15 tolerated(0.14) benign(0.004) TCGA-85-A50Z-01 4 40245146 40245146 T C RHOH Missense_Mutation p.M47T 0.18 deleterious(0) benign(0.237) TCGA-85-A50Z-01 4 46099230 46099230 G T GABRG1 Missense_Mutation p.P81T 0.13 deleterious(0) probably_damaging(0.999) TCGA-85-A50Z-01 4 47887594 47887594 C A NFXL1 Missense_Mutation p.C582F 0.18 deleterious(0) probably_damaging(1) TCGA-85-A50Z-01 4 49030743 49030743 A G CWH43 Missense_Mutation p.N455S 0.26 tolerated(0.18) benign(0.019) TCGA-85-A50Z-01 4 57181683 57181683 G T KIAA1211 Missense_Mutation p.R672L 0.17 deleterious(0) benign(0.433) TCGA-85-A50Z-01 4 57193874 57193874 C T KIAA1211 Silent p.T1202T 0.14 TCGA-85-A50Z-01 4 62936022 62936022 C T LPHN3 Missense_Mutation p.P1269L 0.21 deleterious(0.02) probably_damaging(0.988) TCGA-85-A50Z-01 4 71500229 71500229 T A ENAM Missense_Mutation p.L139M 0.13 tolerated(0.18) benign(0.444) TCGA-85-A50Z-01 4 71510540 71510540 C A ENAM Missense_Mutation p.Q1133K 0.11 deleterious(0.04) unknown(0) TCGA-85-A50Z-01 4 73164099 73164099 C G ADAMTS3 Missense_Mutation p.D829H 0.21 deleterious(0.02) possibly_damaging(0.86) TCGA-85-A50Z-01 4 83350564 83350564 A G HNRNPDL Missense_Mutation p.S94P 0.11 deleterious_low_confidence(0) benign(0.307) TCGA-85-A50Z-01 4 85617889 85617889 C A WDFY3 Missense_Mutation p.R2895L 0.12 deleterious(0) probably_damaging(1) TCGA-85-A50Z-01 4 87732211 87732211 G C PTPN13 Missense_Mutation p.D2443H 0.10 deleterious(0) probably_damaging(0.973) TCGA-85-A50Z-01 4 89649657 89649657 C T FAM13A 3'UTR 0.11 TCGA-85-A50Z-01 5 10992712 10992712 G T CTNND2 Silent p.S1054S 0.48 TCGA-85-A50Z-01 5 10992713 10992713 G T CTNND2 Missense_Mutation p.S1054Y 0.48 tolerated(0.06) possibly_damaging(0.714) TCGA-85-A50Z-01 5 112769598 112769598 C T TSSK1B Silent p.E313E 0.30 TCGA-85-A50Z-01 5 131671580 131671580 T A SLC22A4 Missense_Mutation p.L444Q 0.16 deleterious(0) probably_damaging(0.95) TCGA-85-A50Z-01 5 131927040 131927040 A T RAD50 Missense_Mutation p.E526V 0.30 tolerated(0.06) possibly_damaging(0.649) TCGA-85-A50Z-01 5 13766088 13766088 T A DNAH5 Missense_Mutation p.L3366F 0.20 benign(0.028) TCGA-85-A50Z-01 5 13788946 13788946 C A DNAH5 Missense_Mutation p.W2842C 0.34 possibly_damaging(0.759) TCGA-85-A50Z-01 5 13788947 13788947 C G DNAH5 Missense_Mutation p.W2842S 0.35 benign(0.403) TCGA-85-A50Z-01 5 140175621 140175621 C G PCDHA2 Missense_Mutation p.P358A 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.655) TCGA-85-A50Z-01 5 140501817 140501817 G T PCDHB4 Missense_Mutation p.Q79H 0.47 tolerated_low_confidence(0.09) benign(0.204) TCGA-85-A50Z-01 5 140615243 140615243 C A PCDHB18 RNA 0.27 TCGA-85-A50Z-01 5 141334653 141334653 G T PCDH12 Missense_Mutation p.P922T 0.34 tolerated(0.1) benign(0.193) TCGA-85-A50Z-01 5 145641315 145641315 G T RBM27 Missense_Mutation p.Q712H 0.29 tolerated(0.09) possibly_damaging(0.753) TCGA-85-A50Z-01 5 14607511 14607511 A G FAM105A Missense_Mutation p.T191A 0.34 tolerated(0.23) probably_damaging(0.997) TCGA-85-A50Z-01 5 147261628 147261628 G C SCGB3A2 3'UTR 0.13 TCGA-85-A50Z-01 5 149578809 149578809 C T SLC6A7 Silent p.I201I 0.23 TCGA-85-A50Z-01 5 149578810 149578810 C T SLC6A7 Nonsense_Mutation p.Q202* 0.23 TCGA-85-A50Z-01 5 159520315 159520315 T C PWWP2A Missense_Mutation p.T448A 0.45 tolerated(0.5) benign(0.002) TCGA-85-A50Z-01 5 167850600 167850600 G A WWC1 Missense_Mutation p.R446Q 0.31 deleterious(0.01) probably_damaging(1) TCGA-85-A50Z-01 5 23523402 23523402 C G PRDM9 Missense_Mutation p.I295M 0.31 deleterious(0) benign(0.022) TCGA-85-A50Z-01 5 23527915 23527915 A T PRDM9 3'UTR 0.31 TCGA-85-A50Z-01 5 31267687 31267687 G T CDH6 Missense_Mutation p.R36M 0.29 tolerated(0.11) benign(0.188) TCGA-85-A50Z-01 5 36049112 36049112 A G UGT3A2 Missense_Mutation p.L241P 0.35 tolerated(0.05) probably_damaging(0.996) TCGA-85-A50Z-01 5 36064402 36064402 G A UGT3A2 Missense_Mutation p.H49Y 0.30 deleterious(0.02) benign(0.132) TCGA-85-A50Z-01 5 40853714 40853714 G A CARD6 Silent p.E760E 0.18 TCGA-85-A50Z-01 5 5473683 5473683 G A KIAA0947 Missense_Mutation p.D2079N 0.16 deleterious(0) probably_damaging(1) TCGA-85-A50Z-01 5 55110819 55110819 A T DDX4 Missense_Mutation p.R602S 0.19 deleterious(0) probably_damaging(1) TCGA-85-A50Z-01 5 77805977 77805977 C A LHFPL2 Silent p.V20V 0.38 TCGA-85-A50Z-01 5 82554633 82554633 T C XRCC4 Intron 0.25 TCGA-85-A50Z-01 5 94852699 94852699 T C TTC37 Missense_Mutation p.Y786C 0.35 deleterious(0) probably_damaging(0.968) TCGA-85-A50Z-01 6 10404741 10404741 C T TFAP2A Missense_Mutation p.R255K 0.22 deleterious(0.02) possibly_damaging(0.726) TCGA-85-A50Z-01 6 108066293 108066293 C A SCML4 Missense_Mutation p.S181I 0.12 deleterious(0) probably_damaging(0.999) TCGA-85-A50Z-01 6 131222189 131222189 C A EPB41L2 Missense_Mutation p.G354V 0.15 deleterious(0.02) benign(0.18) TCGA-85-A50Z-01 6 134495962 134495962 C T SGK1 Intron 0.27 TCGA-85-A50Z-01 6 147885588 147885588 G T SAMD5 Missense_Mutation p.R173L 0.16 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-85-A50Z-01 6 159655315 159655315 C A FNDC1 Silent p.V1257V 0.50 TCGA-85-A50Z-01 6 167435937 167435937 C G FGFR1OP Missense_Mutation p.S207C 0.13 deleterious(0) possibly_damaging(0.764) TCGA-85-A50Z-01 6 167570932 167570932 C T GPR31 Missense_Mutation p.A130T 0.30 tolerated(0.82) benign(0.038) TCGA-85-A50Z-01 6 17665526 17665526 G C NUP153 Missense_Mutation p.L387V 0.24 deleterious(0) probably_damaging(0.999) TCGA-85-A50Z-01 6 25799133 25799133 G C SLC17A1 Silent p.A428A 0.15 TCGA-85-A50Z-01 6 28872040 28872040 T C TRIM27 Missense_Mutation p.Y450C 0.22 deleterious(0) probably_damaging(0.996) TCGA-85-A50Z-01 6 31496875 31496875 C A MCCD1 Silent p.S28S 0.10 TCGA-85-A50Z-01 6 32847516 32847516 G T PPP1R2P1 RNA 0.14 TCGA-85-A50Z-01 6 33132154 33132154 G A COL11A2 Missense_Mutation p.P1568S 0.18 unknown(0) TCGA-85-A50Z-01 6 36922439 36922439 C T PI16 5'UTR 0.23 TCGA-85-A50Z-01 6 36929235 36929235 G A PI16 Nonsense_Mutation p.W134* 0.13 TCGA-85-A50Z-01 6 36981476 36981476 G T FGD2 Missense_Mutation p.A207S 0.16 deleterious(0) benign(0.297) TCGA-85-A50Z-01 6 38998054 38998054 C G DNAH8 Nonsense_Mutation p.Y4453* 0.19 TCGA-85-A50Z-01 6 41001653 41001653 C A UNC5CL Missense_Mutation p.R218L 0.23 tolerated(0.19) benign(0.003) TCGA-85-A50Z-01 6 42627393 42627393 G T UBR2 Splice_Site p.X1081_splice 0.14 TCGA-85-A50Z-01 6 43014698 43014698 G T CUL7 Silent p.R857R 0.22 TCGA-85-A50Z-01 6 55300494 55300494 T G HMGCLL1 Missense_Mutation p.N360T 0.18 tolerated(0.19) possibly_damaging(0.611) TCGA-85-A50Z-01 6 62390910 62390910 T A KHDRBS2 Silent p.S336S 0.19 TCGA-85-A50Z-01 6 66053998 66053998 G T EYS Missense_Mutation p.A511E 0.10 tolerated(0.36) benign(0.052) TCGA-85-A50Z-01 6 69646453 69646453 C A BAI3 Nonsense_Mutation p.S304* 0.14 TCGA-85-A50Z-01 6 70916674 70916674 G T COL19A1 Missense_Mutation p.G1098V 0.21 deleterious(0) probably_damaging(1) TCGA-85-A50Z-01 6 71235047 71235047 A T FAM135A Nonsense_Mutation p.K754* 0.21 TCGA-85-A50Z-01 6 74477787 74477787 A G CD109 Missense_Mutation p.R503G 0.15 deleterious(0.04) benign(0.261) TCGA-85-A50Z-01 6 7565621 7565621 G T DSP Silent p.L269L 0.23 TCGA-85-A50Z-01 6 7584945 7584945 A G DSP Missense_Mutation p.K2484E 0.14 benign(0.111) TCGA-85-A50Z-01 6 75887378 75887378 C A COL12A1 Splice_Site p.X813_splice 0.12 TCGA-85-A50Z-01 6 80751923 80751923 G C TTK 3'UTR 0.16 TCGA-85-A50Z-01 6 88853605 88853605 C A CNR1 Silent p.V463V 0.19 TCGA-85-A50Z-01 6 97053874 97053874 C A FHL5 Missense_Mutation p.S144Y 0.17 deleterious(0) probably_damaging(0.968) TCGA-85-A50Z-01 7 103230264 103230264 A G RELN Silent p.G1308G 0.16 TCGA-85-A50Z-01 7 103835669 103835669 C A ORC5 Nonsense_Mutation p.E159* 0.18 TCGA-85-A50Z-01 7 117417644 117417644 A G CTTNBP2 Missense_Mutation p.V900A 0.19 tolerated(0.24) benign(0.008) TCGA-85-A50Z-01 7 120629767 120629767 A G CPED1 Missense_Mutation p.Q31R 0.15 deleterious(0) possibly_damaging(0.815) TCGA-85-A50Z-01 7 121651067 121651067 G C PTPRZ1 Missense_Mutation p.S656T 0.16 tolerated_low_confidence(0.16) benign(0.034) TCGA-85-A50Z-01 7 137761246 137761246 T C AKR1D1 5'UTR 0.18 TCGA-85-A50Z-01 7 138223424 138223424 T A TRIM24 Missense_Mutation p.M340K 0.16 deleterious(0.03) benign(0.232) TCGA-85-A50Z-01 7 138487781 138487781 G A TMEM213 Silent p.L97L 0.17 TCGA-85-A50Z-01 7 139727165 139727165 G C PARP12 Silent p.V513V 0.20 TCGA-85-A50Z-01 7 142124546 142124546 C T TRBV6-8 Missense_Mutation p.C7Y 0.09 tolerated(0.16) benign(0.072) TCGA-85-A50Z-01 7 142223981 142223981 C A TRBV11-1 Silent p.P62P 0.15 TCGA-85-A50Z-01 7 142836715 142836715 G C PIP Missense_Mutation p.E141Q 0.16 tolerated(0.43) benign(0.007) TCGA-85-A50Z-01 7 142991391 142991391 G A CASP2 Missense_Mutation p.E182K 0.16 tolerated(0.05) benign(0.004) TCGA-85-A50Z-01 7 150707288 150707288 C A NOS3 Silent p.T866T 0.14 TCGA-85-A50Z-01 7 15601465 15601465 C G AGMO Missense_Mutation p.K2N 0.18 tolerated_low_confidence(0.24) benign(0.074) TCGA-85-A50Z-01 7 26225165 26225165 A G NFE2L3 Missense_Mutation p.K616R 0.18 tolerated(0.32) benign(0.057) TCGA-85-A50Z-01 7 27222328 27222328 A G HOXA11 3'UTR 0.20 TCGA-85-A50Z-01 7 35131544 35131544 C T DPY19L2P1 RNA 0.14 TCGA-85-A50Z-01 7 44797544 44797544 G T ZMIZ2 Missense_Mutation p.G217V 0.15 deleterious_low_confidence(0.02) benign(0.185) TCGA-85-A50Z-01 7 45701792 45701792 G T ADCY1 Missense_Mutation p.M528I 0.24 tolerated(0.18) benign(0.04) TCGA-85-A50Z-01 7 4874259 4874259 C A RADIL Missense_Mutation p.R465S 0.29 tolerated(0.39) benign(0.018) TCGA-85-A50Z-01 7 56122131 56122131 G T CCT6A Missense_Mutation p.G91C 0.17 deleterious(0.02) possibly_damaging(0.871) TCGA-85-A50Z-01 7 56155432 56155432 G T PHKG1 Missense_Mutation p.P41T 0.12 tolerated(0.39) benign(0.013) TCGA-85-A50Z-01 7 63982755 63982755 C A ZNF680 Missense_Mutation p.C126F 0.10 deleterious(0.02) possibly_damaging(0.828) TCGA-85-A50Z-01 7 66762292 66762292 T C Y_RNA 3'Flank 0.42 TCGA-85-A50Z-01 7 77885447 77885447 G T MAGI2 Silent p.A620A 0.23 TCGA-85-A50Z-01 7 82072840 82072840 G A CACNA2D1 5'UTR 0.27 TCGA-85-A50Z-01 7 87196105 87196105 T A ABCB1 Missense_Mutation p.T176S 0.11 tolerated(0.7) benign(0.004) TCGA-85-A50Z-01 7 92732924 92732924 C G SAMD9 Silent p.L829L 0.16 TCGA-85-A50Z-01 7 94024398 94024398 C A COL1A2 Missense_Mutation p.L19I 0.15 unknown(0) TCGA-85-A50Z-01 7 97873938 97873938 C G TECPR1 Missense_Mutation p.R159P 0.10 deleterious(0) probably_damaging(1) TCGA-85-A50Z-01 8 11414288 11414288 A T BLK Silent p.R298R 0.15 TCGA-85-A50Z-01 8 143569774 143569774 C A BAI1 Missense_Mutation p.F786L 0.21 deleterious(0.01) benign(0.418) TCGA-85-A50Z-01 8 144812443 144812443 C A FAM83H Missense_Mutation p.V104L 0.29 deleterious(0.05) probably_damaging(0.963) TCGA-85-A50Z-01 8 144941714 144941714 G T EPPK1 Missense_Mutation p.T1903K 0.12 possibly_damaging(0.451) TCGA-85-A50Z-01 8 146017220 146017220 G A RPL8 Missense_Mutation p.T73M 0.16 deleterious(0.04) benign(0.087) TCGA-85-A50Z-01 8 17401040 17401040 G T SLC7A2 Silent p.S104S 0.23 TCGA-85-A50Z-01 8 30890118 30890118 C A PURG Missense_Mutation p.A61S 0.23 deleterious(0.01) possibly_damaging(0.772) TCGA-85-A50Z-01 8 35606049 35606049 C T UNC5D Nonsense_Mutation p.Q591* 0.24 TCGA-85-A50Z-01 8 39627032 39627032 G A ADAM2 Missense_Mutation p.S364L 0.55 tolerated(0.09) possibly_damaging(0.461) TCGA-85-A50Z-01 8 61769084 61769084 C G CHD7 Silent p.A2415A 0.14 TCGA-85-A50Z-01 8 62212669 62212669 G T CLVS1 Missense_Mutation p.A95S 0.22 tolerated(0.19) probably_damaging(0.964) TCGA-85-A50Z-01 8 63502338 63502338 A T NKAIN3 Silent p.V86V 0.24 TCGA-85-A50Z-01 8 68421765 68421766 AG - CPA6 Frame_Shift_Del p.L174Ffs*44 0.10 TCGA-85-A50Z-01 8 73480340 73480340 A G KCNB2 Missense_Mutation p.D124G 0.19 deleterious(0) probably_damaging(0.932) TCGA-85-A50Z-01 8 80679286 80679286 C T HEY1 Silent p.L69L 0.17 TCGA-85-A50Z-01 8 86250486 86250486 C A CA1 Missense_Mutation p.R77L 0.19 deleterious(0.01) benign(0.132) TCGA-85-A50Z-01 8 98943684 98943684 G A MATN2 Missense_Mutation p.V216I 0.15 tolerated(0.07) benign(0.308) TCGA-85-A50Z-01 9 100693010 100693010 C A HEMGN Missense_Mutation p.A223S 0.18 tolerated(0.09) benign(0.008) TCGA-85-A50Z-01 9 101243265 101243265 C A GABBR2 Silent p.R249R 0.09 TCGA-85-A50Z-01 9 107289356 107289356 C G OR13C4 Silent p.L45L 0.20 TCGA-85-A50Z-01 9 107366988 107366988 T C OR13C2 Silent p.V307V 0.19 TCGA-85-A50Z-01 9 119737564 119737564 C T ASTN2 Silent p.P553P 0.24 TCGA-85-A50Z-01 9 135772706 135772715 CTGCTCTCTG - TSC1 Frame_Shift_Del p.A944Gfs*8 0.19 TCGA-85-A50Z-01 9 136083519 136083519 C A OBP2B Splice_Site p.X93_splice 0.18 TCGA-85-A50Z-01 9 138713025 138713025 T A CAMSAP1 Missense_Mutation p.H1161L 0.18 tolerated(0.16) benign(0.012) TCGA-85-A50Z-01 9 138714106 138714106 G C CAMSAP1 Missense_Mutation p.Q801E 0.20 deleterious(0.01) possibly_damaging(0.854) TCGA-85-A50Z-01 9 21367575 21367575 C G IFNA13 Missense_Mutation p.K145N 0.12 deleterious(0) possibly_damaging(0.733) TCGA-85-A50Z-01 9 32634767 32634767 C G TAF1L Missense_Mutation p.V271L 0.17 tolerated(1) benign(0.034) TCGA-85-A50Z-01 9 79320491 79320491 A G PRUNE2 Silent p.T2233T 0.18 TCGA-85-A50Z-01 X 102962284 102962284 G T GLRA4 Silent p.L414L 0.26 TCGA-85-A50Z-01 X 107975997 107975997 G C IRS4 Missense_Mutation p.S1193C 0.34 tolerated_low_confidence(0.06) unknown(0) TCGA-85-A50Z-01 X 119666366 119666366 T C CUL4B Missense_Mutation p.I802V 0.31 tolerated(1) benign(0.003) TCGA-85-A50Z-01 X 12904211 12904211 T C TLR7 Missense_Mutation p.I195T 0.33 deleterious(0) possibly_damaging(0.842) TCGA-85-A50Z-01 X 129630082 129630082 A T RP1-274L7.1 Intron 0.27 TCGA-85-A50Z-01 X 134428008 134428008 C A ZNF75D Missense_Mutation p.W20L 0.29 tolerated(0.19) possibly_damaging(0.901) TCGA-85-A50Z-01 X 149887105 149887105 G T MTMR1 Missense_Mutation p.R87S 0.22 tolerated(0.09) benign(0.016) TCGA-85-A50Z-01 X 153694062 153694062 C T PLXNA3 Missense_Mutation p.R802C 0.40 deleterious(0) possibly_damaging(0.873) TCGA-85-A50Z-01 X 17167224 17167224 G A REPS2 3'UTR 0.45 TCGA-85-A50Z-01 X 30714741 30714741 G C GK Missense_Mutation p.G224R 0.22 deleterious(0.05) benign(0.188) TCGA-85-A50Z-01 X 30737597 30737597 G T GK Silent p.G366G 0.15 TCGA-85-A50Z-01 X 37027064 37027064 G T FAM47C Missense_Mutation p.R194L 0.40 tolerated(0.69) benign(0.059) TCGA-85-A50Z-01 X 44703441 44703441 C T DUSP21 Silent p.S21S 0.33 TCGA-85-A50Z-01 X 55514807 55514808 - A USP51 Frame_Shift_Ins p.G189Vfs*14 0.47 TCGA-85-A50Z-01 X 55514808 55514808 C A USP51 Missense_Mutation p.G189C 0.47 deleterious(0.02) benign(0.133) TCGA-85-A510-01 10 116225486 116225486 G A ABLIM1 Missense_Mutation p.S471F 0.20 deleterious(0) probably_damaging(0.969) TCGA-85-A510-01 10 123600747 123600747 C T ATE1 Missense_Mutation p.G336D 0.15 deleterious(0) probably_damaging(0.959) TCGA-85-A510-01 10 127434403 127434403 G C EDRF1 Silent p.T906T 0.26 TCGA-85-A510-01 10 18250540 18250540 G A SLC39A12 Missense_Mutation p.A98T 0.39 tolerated(0.13) probably_damaging(0.937) TCGA-85-A510-01 10 69902753 69902753 C T MYPN Missense_Mutation p.A320V 0.32 tolerated(0.06) benign(0.143) TCGA-85-A510-01 10 71690283 71690283 G T COL13A1 Missense_Mutation p.G542V 0.16 deleterious(0) probably_damaging(1) TCGA-85-A510-01 10 88260302 88260302 C G WAPAL Missense_Mutation p.R233T 0.27 tolerated_low_confidence(0.61) benign(0.007) TCGA-85-A510-01 11 10772860 10772860 C T CTR9 5'UTR 0.38 TCGA-85-A510-01 11 1215833 1215833 G A MUC5AC RNA 0.22 TCGA-85-A510-01 11 123989037 123989037 G C VWA5A Missense_Mutation p.V130L 0.39 deleterious(0) probably_damaging(0.991) TCGA-85-A510-01 11 47711800 47711800 G A AGBL2 Nonsense_Mutation p.Q487* 0.44 TCGA-85-A510-01 11 5080435 5080435 C G OR52E2 Missense_Mutation p.K141N 0.46 deleterious(0.04) benign(0.262) TCGA-85-A510-01 11 55999921 55999921 C A OR5T2 Silent p.L247L 0.38 TCGA-85-A510-01 11 5631764 5631764 G C TRIM6 Splice_Site p.X320_splice 0.17 TCGA-85-A510-01 11 6220521 6220521 C A OR52W1 Missense_Mutation p.P23Q 0.35 deleterious(0) probably_damaging(0.998) TCGA-85-A510-01 11 63230935 63230935 G C HRASLS5 3'UTR 0.20 TCGA-85-A510-01 11 65269686 65269686 T G MALAT1 RNA 0.22 TCGA-85-A510-01 11 69588113 69588113 G C FGF4 Silent p.P195P 0.22 TCGA-85-A510-01 11 804254 804254 C G PIDD Silent p.G45G 0.13 TCGA-85-A510-01 12 133219858 133219858 C A POLE Silent p.G1501G 0.55 TCGA-85-A510-01 12 2656618 2656618 G A CACNA1C Intron 0.38 TCGA-85-A510-01 12 2690913 2690913 C A CACNA1C Silent p.R685R 0.14 TCGA-85-A510-01 12 3763467 3763467 C A EFCAB4B Silent p.L319L 0.46 TCGA-85-A510-01 12 53201570 53201570 C T KRT4 Missense_Mutation p.V402I 0.05 tolerated(0.15) benign(0.004) TCGA-85-A510-01 12 57324269 57324269 C A SDR9C7 Splice_Site p.X101_splice 0.47 TCGA-85-A510-01 12 66765548 66765548 T A GRIP1 Nonsense_Mutation p.K928* 0.15 TCGA-85-A510-01 12 78522646 78522646 G T NAV3 Missense_Mutation p.V1481L 0.14 tolerated(0.45) benign(0.035) TCGA-85-A510-01 12 85450175 85450175 A - LRRIQ1 Frame_Shift_Del p.E537Kfs*5 0.25 TCGA-85-A510-01 12 94563050 94563050 G A PLXNC1 Missense_Mutation p.G395E 0.19 tolerated(0.26) benign(0.034) TCGA-85-A510-01 12 9995016 9995016 C T KLRF1 Missense_Mutation p.P192S 0.23 tolerated(0.89) benign(0.034) TCGA-85-A510-01 13 100511264 100511264 G T CLYBL Silent p.L133L 0.21 TCGA-85-A510-01 13 33333830 33333830 T A PDS5B Splice_Site p.X1124_splice 0.25 TCGA-85-A510-01 13 42788706 42788706 C T DGKH Silent p.A1026A 0.18 TCGA-85-A510-01 13 48916776 48916776 T A RB1 Nonsense_Mutation p.C102* 0.29 TCGA-85-A510-01 14 107049101 107049101 C A IGHV3-53 Missense_Mutation p.W7L 0.24 tolerated_low_confidence(0.12) benign(0.168) TCGA-85-A510-01 14 20710992 20710992 A G OR11H4 Silent p.S14S 0.24 TCGA-85-A510-01 14 23355391 23355391 C A REM2 Silent p.L226L 0.36 TCGA-85-A510-01 14 31618277 31618277 C A HECTD1 Nonsense_Mutation p.G749* 0.46 TCGA-85-A510-01 14 64610615 64610615 G T SYNE2 Silent p.L5144L 0.17 TCGA-85-A510-01 15 102358419 102358419 A T OR4F15 Silent p.S10S 0.47 TCGA-85-A510-01 15 23932397 23932397 C T NDN 5'UTR 0.09 TCGA-85-A510-01 15 32929967 32929967 G T ARHGAP11A Missense_Mutation p.R998M 0.29 deleterious(0) probably_damaging(0.984) TCGA-85-A510-01 15 48521483 48521483 G T SLC12A1 Missense_Mutation p.M274I 0.31 deleterious(0) probably_damaging(0.963) TCGA-85-A510-01 15 75586302 75586302 G T GOLGA6D Silent p.T581T 0.12 TCGA-85-A510-01 15 98512415 98512415 G C ARRDC4 Missense_Mutation p.A230P 0.25 deleterious(0) probably_damaging(0.998) TCGA-85-A510-01 16 17235161 17235161 C T XYLT1 Missense_Mutation p.G479E 0.18 deleterious(0) probably_damaging(1) TCGA-85-A510-01 16 21080876 21080876 C T DNAH3 Missense_Mutation p.D1081N 0.33 deleterious(0.01) possibly_damaging(0.67) TCGA-85-A510-01 16 29912397 29912397 G A ASPHD1 Silent p.Q35Q 0.25 TCGA-85-A510-01 16 31288273 31288273 T C ITGAM Silent p.Y372Y 0.41 TCGA-85-A510-01 16 313297 313297 G A ITFG3 Silent p.G336G 0.30 TCGA-85-A510-01 16 55363085 55363085 G T IRX6 Missense_Mutation p.A399S 0.29 tolerated(0.21) benign(0.021) TCGA-85-A510-01 16 57413543 57413543 C A CX3CL1 Intron 0.39 TCGA-85-A510-01 16 71482379 71482379 C A ZNF23 Missense_Mutation p.A517S 0.36 tolerated(1) benign(0.157) TCGA-85-A510-01 16 74566022 74566022 A C GLG1 Missense_Mutation p.N156K 0.25 tolerated(0.11) benign(0.016) TCGA-85-A510-01 16 7760685 7760685 G A RBFOX1 Missense_Mutation p.V399I 0.22 tolerated_low_confidence(0.18) probably_damaging(0.968) TCGA-85-A510-01 16 81190586 81190586 C G PKD1L2 RNA 0.48 TCGA-85-A510-01 17 10357934 10357934 G A MYH4 Silent p.L877L 0.50 TCGA-85-A510-01 17 28706548 28706548 C T CPD Missense_Mutation p.P184S 0.27 deleterious(0) probably_damaging(1) TCGA-85-A510-01 17 39597001 39597001 C A KRT38 Missense_Mutation p.G58V 0.17 deleterious(0.05) probably_damaging(1) TCGA-85-A510-01 17 43009001 43009001 C T KIF18B Missense_Mutation p.A496T 0.21 tolerated(0.57) benign(0.076) TCGA-85-A510-01 17 43342138 43342138 G A SPATA32 5'Flank 0.51 TCGA-85-A510-01 17 5353651 5353651 C T DHX33 Missense_Mutation p.V534I 0.28 tolerated(0.7) benign(0.05) TCGA-85-A510-01 17 7577536 7577536 T C TP53 Missense_Mutation p.R249G 0.55 deleterious(0) probably_damaging(0.991) TCGA-85-A510-01 18 44560134 44560134 G T TCEB3B Missense_Mutation p.A501D 0.23 deleterious(0) possibly_damaging(0.603) TCGA-85-A510-01 18 47799768 47799768 T A MBD1 Missense_Mutation p.D507V 0.35 deleterious_low_confidence(0) benign(0.398) TCGA-85-A510-01 18 51904543 51904543 G T C18orf54 Splice_Site p.X349_splice 0.19 TCGA-85-A510-01 18 7774169 7774169 G T PTPRM Silent p.P32P 0.19 TCGA-85-A510-01 19 17654171 17654171 T G FAM129C Missense_Mutation p.C490G 0.57 tolerated(0.6) probably_damaging(0.917) TCGA-85-A510-01 19 23836119 23836119 T A ZNF675 Missense_Mutation p.E539V 0.26 deleterious(0.01) possibly_damaging(0.711) TCGA-85-A510-01 19 35823528 35823528 C A CD22 Missense_Mutation p.A38D 0.43 deleterious(0) probably_damaging(0.951) TCGA-85-A510-01 19 35823529 35823529 C G CD22 Silent p.A38A 0.43 TCGA-85-A510-01 19 40364077 40364077 G A FCGBP Silent p.R4855R 0.04 TCGA-85-A510-01 19 58549536 58549536 G T ZSCAN1 Missense_Mutation p.S111I 0.17 tolerated(0.19) possibly_damaging(0.883) TCGA-85-A510-01 19 7734741 7734741 C G RETN Missense_Mutation p.C51W 0.76 deleterious(0) probably_damaging(1) TCGA-85-A510-01 1 11333549 11333549 G - UBIAD1 5'UTR 0.15 TCGA-85-A510-01 1 119958158 119958158 G C HSD3B2 Missense_Mutation p.R39T 0.28 tolerated(0.23) benign(0.034) TCGA-85-A510-01 1 120480522 120480522 C A NOTCH2 Missense_Mutation p.D1099Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-85-A510-01 1 120480524 120480524 C A NOTCH2 Missense_Mutation p.C1098F 0.16 deleterious(0) probably_damaging(0.997) TCGA-85-A510-01 1 150129149 150129150 - T PLEKHO1 Frame_Shift_Ins p.S122Ffs*20 0.28 TCGA-85-A510-01 1 160654715 160654715 C A CD48 Missense_Mutation p.G116V 0.46 deleterious(0.02) possibly_damaging(0.905) TCGA-85-A510-01 1 162343979 162343979 G T C1orf111 Nonsense_Mutation p.Y215* 0.54 TCGA-85-A510-01 1 165370502 165370502 A T RXRG Nonstop_Mutation p.*464Rext*39 0.54 TCGA-85-A510-01 1 167343474 167343474 G A POU2F1 Missense_Mutation p.A178T 0.50 tolerated(0.1) unknown(0) TCGA-85-A510-01 1 171073041 171073041 A G FMO3 Missense_Mutation p.H83R 0.45 deleterious(0.02) possibly_damaging(0.547) TCGA-85-A510-01 1 178425950 178425950 G C RASAL2 Missense_Mutation p.R769P 0.21 tolerated(0.14) probably_damaging(0.916) TCGA-85-A510-01 1 179399689 179399689 G A AXDND1 Missense_Mutation p.E479K 0.10 tolerated(0.18) benign(0) TCGA-85-A510-01 1 197128918 197128918 T A ZBTB41 Silent p.P767P 0.30 TCGA-85-A510-01 1 237965187 237965187 T A RYR2 Missense_Mutation p.W4708R 0.23 probably_damaging(0.961) TCGA-85-A510-01 1 23954360 23954360 C A MDS2 5'UTR 0.26 TCGA-85-A510-01 1 23954362 23954362 C A MDS2 5'UTR 0.25 TCGA-85-A510-01 1 240255629 240255629 G T FMN2 Missense_Mutation p.V74L 0.16 unknown(0) TCGA-85-A510-01 1 248263222 248263222 C A OR2L13 Missense_Mutation p.A182D 0.32 deleterious(0) probably_damaging(0.955) TCGA-85-A510-01 1 248487107 248487107 C A OR2M7 Missense_Mutation p.G255V 0.42 tolerated(0.1) benign(0.007) TCGA-85-A510-01 1 248616757 248616757 C G OR2T2 Missense_Mutation p.T220R 0.23 tolerated(0.07) possibly_damaging(0.856) TCGA-85-A510-01 1 3328363 3328363 G A PRDM16 Silent p.L534L 0.21 TCGA-85-A510-01 1 35485168 35485168 C A ZMYM6 Missense_Mutation p.A72S 0.22 tolerated(0.12) benign(0.05) TCGA-85-A510-01 20 36766697 36766697 C A TGM2 Missense_Mutation p.R478L 0.31 deleterious(0) benign(0.344) TCGA-85-A510-01 20 40944520 40944520 A T PTPRT Missense_Mutation p.L661Q 0.19 tolerated(0.71) benign(0.029) TCGA-85-A510-01 20 42744378 42744378 G T JPH2 Missense_Mutation p.T646N 0.16 tolerated(0.11) benign(0.043) TCGA-85-A510-01 20 43034759 43034759 G A HNF4A Silent p.L59L 0.34 TCGA-85-A510-01 20 46262344 46262344 G T NCOA3 Missense_Mutation p.G310W 0.21 deleterious(0) probably_damaging(0.999) TCGA-85-A510-01 21 31802936 31802936 C A KRTAP13-4 Missense_Mutation p.L115M 0.57 tolerated(0.05) possibly_damaging(0.612) TCGA-85-A510-01 21 38072073 38072073 C A SIM2 Silent p.A9A 0.44 TCGA-85-A510-01 21 46945739 46945739 G A SLC19A1 Missense_Mutation p.R429C 0.63 tolerated(0.18) benign(0.051) TCGA-85-A510-01 22 23603166 23603166 G A BCR Silent p.E497E 0.25 TCGA-85-A510-01 22 23603167 23603167 A T BCR Missense_Mutation p.M498L 0.26 deleterious(0.01) benign(0.067) TCGA-85-A510-01 22 38934346 38934346 C T DMC1 Silent p.Q243Q 0.32 TCGA-85-A510-01 22 44223515 44223515 A G SULT4A1 Intron 0.13 TCGA-85-A510-01 2 118766196 118766196 C G CCDC93 Missense_Mutation p.L27F 0.19 tolerated(0.21) possibly_damaging(0.838) TCGA-85-A510-01 2 131704309 131704309 G T ARHGEF4 Intron 0.18 TCGA-85-A510-01 2 136669016 136669016 C T DARS Silent p.L426L 0.41 TCGA-85-A510-01 2 138169229 138169229 G T THSD7B Missense_Mutation p.V916L 0.20 tolerated(0.24) benign(0.198) TCGA-85-A510-01 2 179425703 179425703 G T TTN Missense_Mutation p.L28386M 0.26 TCGA-85-A510-01 2 179425704 179425704 A T TTN Silent p.P28385P 0.26 TCGA-85-A510-01 2 179496902 179496902 C A TTN Missense_Mutation p.M14573I 0.46 TCGA-85-A510-01 2 179623862 179623862 G T TTN Silent p.I3384I 0.26 TCGA-85-A510-01 2 192251974 192251974 G T MYO1B Missense_Mutation p.V527F 0.47 deleterious(0) probably_damaging(1) TCGA-85-A510-01 2 196729515 196729515 A - DNAH7 Frame_Shift_Del p.D2288Efs*7 0.14 TCGA-85-A510-01 2 217142530 217142530 C A MARCH4 Missense_Mutation p.G244C 0.35 deleterious(0.05) benign(0.216) TCGA-85-A510-01 2 242577082 242577082 C T ATG4B 5'UTR 0.22 TCGA-85-A510-01 2 68544250 68544250 C - CNRIP1 Intron 0.14 TCGA-85-A510-01 2 74758080 74758080 C T HTRA2 Missense_Mutation p.R252W 0.05 deleterious(0) probably_damaging(1) TCGA-85-A510-01 2 87085339 87085339 C G CD8B Missense_Mutation p.G82R 0.31 deleterious(0) probably_damaging(1) TCGA-85-A510-01 2 89513144 89513144 C A IGKV1-27 Missense_Mutation p.D39Y 0.37 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-85-A510-01 2 96933434 96933434 G T CIAO1 Silent p.L120L 0.23 TCGA-85-A510-01 3 111312552 111312552 G T ZBED2 Missense_Mutation p.A166E 0.20 deleterious(0) possibly_damaging(0.622) TCGA-85-A510-01 3 1262389 1262389 G A CNTN6 Missense_Mutation p.R25H 0.20 deleterious(0.02) benign(0.002) TCGA-85-A510-01 3 138665525 138665525 C T FOXL2 Missense_Mutation p.A14T 0.26 tolerated_low_confidence(0.14) unknown(0) TCGA-85-A510-01 3 185998501 185998501 A C DGKG Missense_Mutation p.H209Q 0.19 tolerated(0.05) probably_damaging(0.997) TCGA-85-A510-01 3 188327075 188327075 C A LPP Missense_Mutation p.P186T 0.34 tolerated(0.24) benign(0.003) TCGA-85-A510-01 3 19295235 19295235 G T KCNH8 Missense_Mutation p.A56S 0.36 tolerated(0.82) benign(0.034) TCGA-85-A510-01 3 38620965 38620965 C A SCN5A Missense_Mutation p.G1084C 0.50 tolerated(0.06) benign(0.007) TCGA-85-A510-01 3 42229540 42229540 T C TRAK1 Missense_Mutation p.S162P 0.28 deleterious(0.03) probably_damaging(0.961) TCGA-85-A510-01 3 49896684 49896684 G T CAMKV 3'UTR 0.71 TCGA-85-A510-01 3 6903427 6903427 C A GRM7 Missense_Mutation p.Q118K 0.44 deleterious(0.01) probably_damaging(0.981) TCGA-85-A510-01 3 98188558 98188558 G C OR5K1 Silent p.V46V 0.27 TCGA-85-A510-01 4 164272118 164272118 T C NPY5R Silent p.H231H 0.16 TCGA-85-A510-01 4 55155223 55155223 C A PDGFRA Missense_Mutation p.P941H 0.21 deleterious(0) probably_damaging(1) TCGA-85-A510-01 4 71346702 71346702 C T MUC7 Missense_Mutation p.P81S 0.22 deleterious(0.05) benign(0.025) TCGA-85-A510-01 5 121487946 121487946 C G ZNF474 Missense_Mutation p.I87M 0.52 deleterious(0.02) probably_damaging(0.999) TCGA-85-A510-01 5 140481548 140481548 G T PCDHB3 Missense_Mutation p.V439L 0.56 tolerated_low_confidence(0.07) benign(0.24) TCGA-85-A510-01 5 140741521 140741521 C A PCDHGB2 Missense_Mutation p.H607N 0.48 deleterious(0.01) possibly_damaging(0.501) TCGA-85-A510-01 5 169461520 169461520 G T DOCK2 Missense_Mutation p.E1195D 0.46 tolerated(0.09) benign(0.076) TCGA-85-A510-01 5 37350287 37350287 C A NUP155 Missense_Mutation p.L268F 0.27 tolerated(0.74) benign(0.009) TCGA-85-A510-01 5 41159260 41159260 G A C6 Missense_Mutation p.P594S 0.44 deleterious(0) probably_damaging(0.987) TCGA-85-A510-01 5 41160463 41160463 G T C6 Missense_Mutation p.P489T 0.10 deleterious(0) probably_damaging(0.938) TCGA-85-A510-01 5 41203187 41203187 C A C6 Intron 0.17 TCGA-85-A510-01 5 95761616 95761616 G C PCSK1 Missense_Mutation p.Q102E 0.67 deleterious(0.01) probably_damaging(0.996) TCGA-85-A510-01 6 132892328 132892328 G T TAAR6 Missense_Mutation p.A290S 0.40 tolerated(0.3) benign(0.021) TCGA-85-A510-01 6 136878854 136878854 T C MAP3K5 3'UTR 0.41 TCGA-85-A510-01 6 146678753 146678753 G A GRM1 Missense_Mutation p.D509N 0.48 tolerated(0.06) possibly_damaging(0.71) TCGA-85-A510-01 6 152563478 152563478 T C SYNE1 Missense_Mutation p.D6597G 0.51 probably_damaging(0.935) TCGA-85-A510-01 6 24596819 24596819 C T KIAA0319 Missense_Mutation p.G28E 0.64 deleterious(0) probably_damaging(1) TCGA-85-A510-01 6 80197404 80197404 G T LCA5 Missense_Mutation p.L471M 0.25 tolerated(0.64) probably_damaging(0.955) TCGA-85-A510-01 7 142423437 142423437 C A TRBV27 Silent p.I31I 0.36 TCGA-85-A510-01 7 143078872 143078872 G A ZYX Missense_Mutation p.D70N 0.50 tolerated(0.07) unknown(0) TCGA-85-A510-01 7 144150555 144150555 C G TPK1 3'UTR 0.31 TCGA-85-A510-01 7 149495181 149495181 C G SSPO RNA 0.24 TCGA-85-A510-01 7 2473351 2473351 C A CHST12 Missense_Mutation p.D359E 0.29 tolerated(0.33) benign(0.252) TCGA-85-A510-01 7 27671983 27671983 C T HIBADH Missense_Mutation p.A112T 0.29 tolerated(0.17) benign(0.039) TCGA-85-A510-01 7 38398134 38398134 A G TRGV3 Silent p.Y111Y 0.23 TCGA-85-A510-01 8 104061134 104061141 ATTGGAAG - ATP6V1C1 Frame_Shift_Del p.L80* 0.12 TCGA-85-A510-01 8 123965503 123965503 G T ZHX2 Missense_Mutation p.D585Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-85-A510-01 8 22267479 22267479 A T SLC39A14 Missense_Mutation p.S160C 0.14 tolerated(1) benign(0.001) TCGA-85-A510-01 8 26237279 26237279 C T BNIP3L 5'Flank 0.13 TCGA-85-A510-01 8 28378207 28378207 T - FZD3 Frame_Shift_Del p.C82Vfs*62 0.23 TCGA-85-A510-01 8 52323846 52323846 C A PXDNL Missense_Mutation p.V676L 0.26 deleterious(0.02) benign(0.049) TCGA-85-A510-01 8 55533567 55533567 C A RP1 Missense_Mutation p.P14H 0.36 deleterious(0.01) benign(0.114) TCGA-85-A510-01 8 62438550 62438550 G A ASPH Missense_Mutation p.T629M 0.28 deleterious(0) probably_damaging(0.998) TCGA-85-A510-01 8 82357181 82357181 G T PMP2 Silent p.P39P 0.43 TCGA-85-A510-01 9 120475736 120475736 C T TLR4 Silent p.L444L 0.55 TCGA-85-A510-01 9 131750389 131750389 C A NUP188 Silent p.S819S 0.26 TCGA-85-A510-01 9 134073555 134073555 T A NUP214 Silent p.T1558T 0.31 TCGA-85-A510-01 9 32487625 32487625 C A DDX58 Missense_Mutation p.G407W 0.25 deleterious(0) probably_damaging(1) TCGA-85-A510-01 9 37020667 37020667 C A PAX5 Missense_Mutation p.V60F 0.50 deleterious(0) probably_damaging(0.988) TCGA-85-A510-01 9 71628547 71628547 G T PRKACG Silent p.A154A 0.54 TCGA-85-A510-01 9 77692407 77692407 T C NMRK1 Missense_Mutation p.K40R 0.52 deleterious(0.01) possibly_damaging(0.883) TCGA-85-A510-01 9 96715257 96715257 G A BARX1 Missense_Mutation p.R146C 0.27 deleterious(0) probably_damaging(0.999) TCGA-85-A510-01 X 101615496 101615496 A T NXF2B 3'UTR 0.27 TCGA-85-A510-01 X 144905905 144905906 - A SLITRK2 Frame_Shift_Ins p.R655Kfs*21 0.30 TCGA-85-A510-01 X 18926146 18926146 C A PHKA2 Nonsense_Mutation p.G797* 0.20 TCGA-85-A510-01 X 27998826 27998826 G T DCAF8L1 Missense_Mutation p.T209N 0.14 tolerated(0.11) benign(0.029) TCGA-85-A510-01 X 35993427 35993427 C A CXorf22 Silent p.S806S 0.18 TCGA-85-A510-01 X 41333853 41333853 G T NYX Missense_Mutation p.D383Y 0.38 deleterious(0.01) possibly_damaging(0.818) TCGA-85-A510-01 X 47497328 47497328 G T ELK1 Missense_Mutation p.S303Y 0.19 deleterious(0.02) possibly_damaging(0.583) TCGA-85-A510-01 X 48921461 48921461 C T CCDC120 Missense_Mutation p.R85W 0.36 deleterious(0) probably_damaging(0.999) TCGA-85-A510-01 X 51488685 51488685 T A GSPT2 3'UTR 0.22 TCGA-85-A510-01 X 53564622 53564622 C A HUWE1 Missense_Mutation p.G4011V 0.17 unknown(0) TCGA-85-A510-01 X 55247879 55247879 C A PAGE5 Missense_Mutation p.P42T 0.26 tolerated(0.27) possibly_damaging(0.902) TCGA-85-A510-01 X 55515293 55515293 G T USP51 Missense_Mutation p.P27H 0.16 deleterious_low_confidence(0.03) unknown(0) TCGA-85-A510-01 X 63413256 63413256 C A AMER1 5'UTR 0.33 TCGA-85-A510-01 X 63413257 63413257 A G AMER1 5'UTR 0.35 TCGA-85-A510-01 X 88009124 88009124 C A CPXCR1 Missense_Mutation p.L237I 0.50 tolerated(0.14) benign(0.002) TCGA-85-A511-01 10 115423732 115423732 G C NRAP 5'UTR 0.21 TCGA-85-A511-01 10 119798640 119798640 T C RAB11FIP2 Missense_Mutation p.R370G 0.23 deleterious(0.01) benign(0.204) TCGA-85-A511-01 10 134219333 134219333 G A PWWP2B Silent p.T443T 0.09 TCGA-85-A511-01 10 18169525 18169525 G C MRC1 Missense_Mutation p.A931P 0.15 tolerated(0.29) possibly_damaging(0.602) TCGA-85-A511-01 10 18242374 18242374 C A SLC39A12 Missense_Mutation p.P57T 0.15 tolerated(0.59) benign(0.006) TCGA-85-A511-01 10 323151 323151 C A DIP2C 3'UTR 0.17 TCGA-85-A511-01 10 43613858 43613858 A - RET Frame_Shift_Del p.E775Sfs*5 0.17 TCGA-85-A511-01 10 45484812 45484812 A T RASSF4 Missense_Mutation p.N208Y 0.27 deleterious(0.05) probably_damaging(0.975) TCGA-85-A511-01 10 50946067 50946067 C T OGDHL Missense_Mutation p.V815M 0.14 deleterious(0) probably_damaging(0.991) TCGA-85-A511-01 10 50959893 50959893 G T OGDHL Silent p.A243A 0.17 TCGA-85-A511-01 10 52005072 52005072 G T ASAH2 Silent p.T90T 0.16 TCGA-85-A511-01 10 75542963 75542963 C G CHCHD1 3'UTR 0.09 TCGA-85-A511-01 11 101762158 101762158 A G ANGPTL5 Missense_Mutation p.L340P 0.22 tolerated(0.05) probably_damaging(0.989) TCGA-85-A511-01 11 124743643 124743643 G T ROBO3 Missense_Mutation p.G557W 0.19 deleterious(0) probably_damaging(0.996) TCGA-85-A511-01 11 14899737 14899737 T G CYP2R1 Silent p.P479P 0.27 TCGA-85-A511-01 11 17743076 17743076 C A MYOD1 3'UTR 0.19 TCGA-85-A511-01 11 18127574 18127574 G A SAAL1 Silent p.P5P 0.29 TCGA-85-A511-01 11 4790866 4790866 G A OR51F1 Silent p.I94I 0.12 TCGA-85-A511-01 11 50003138 50003138 C - OR4C12 Frame_Shift_Del p.W300* 0.26 TCGA-85-A511-01 11 55340341 55340341 C T OR4C16 Silent p.I246I 0.08 TCGA-85-A511-01 11 55890784 55890784 G A OR8H3 Silent p.R312R 0.07 TCGA-85-A511-01 11 5776662 5776662 C A OR52N4 Missense_Mutation p.S231Y 0.26 deleterious(0) possibly_damaging(0.883) TCGA-85-A511-01 11 58035049 58035049 G A OR10W1 Silent p.F94F 0.08 TCGA-85-A511-01 11 65266504 65266504 G T MALAT1 RNA 0.28 TCGA-85-A511-01 11 66455730 66455730 C T SPTBN2 Missense_Mutation p.R2095Q 0.12 tolerated(0.34) benign(0.137) TCGA-85-A511-01 11 68337330 68337330 C G PPP6R3 Missense_Mutation p.Q415E 0.23 tolerated(1) benign(0) TCGA-85-A511-01 11 69513876 69513876 C A FGF19 3'UTR 0.41 TCGA-85-A511-01 11 89892451 89892451 C A NAALAD2 Missense_Mutation p.A312D 0.27 tolerated(0.1) benign(0.009) TCGA-85-A511-01 12 103288529 103288529 A G PAH Silent p.D112D 0.20 TCGA-85-A511-01 12 112451196 112451196 C A ERP29 5'UTR 0.21 TCGA-85-A511-01 12 123036045 123036045 C G KNTC1 Missense_Mutation p.L391V 0.18 deleterious(0) probably_damaging(0.952) TCGA-85-A511-01 12 132464247 132464247 C A EP400 Silent p.A448A 0.12 TCGA-85-A511-01 12 18237525 18237525 A G RERGL Silent p.S87S 0.16 TCGA-85-A511-01 12 21445168 21445168 G T SLCO1A2 Missense_Mutation p.L514I 0.36 deleterious(0.03) possibly_damaging(0.58) TCGA-85-A511-01 12 24736321 24736321 G T LINC00477 RNA 0.45 TCGA-85-A511-01 12 2693668 2693668 G T CACNA1C Splice_Site p.X742_splice 0.14 TCGA-85-A511-01 12 56232458 56232458 G T MMP19 Missense_Mutation p.P276H 0.21 deleterious(0.01) possibly_damaging(0.717) TCGA-85-A511-01 12 57454574 57454574 G A TMEM194A Nonsense_Mutation p.R379* 0.16 TCGA-85-A511-01 12 57648846 57648846 T A R3HDM2 Missense_Mutation p.T881S 0.10 tolerated(0.21) benign(0.05) TCGA-85-A511-01 12 6747950 6747950 G C ACRBP Intron 0.29 TCGA-85-A511-01 12 7653839 7653839 A G CD163 Missense_Mutation p.V118A 0.11 deleterious(0.01) possibly_damaging(0.617) TCGA-85-A511-01 12 81101647 81101647 C T MYF6 Missense_Mutation p.P50L 0.16 tolerated(0.4) benign(0.146) TCGA-85-A511-01 12 81528746 81528746 C A ACSS3 Missense_Mutation p.A203D 0.09 deleterious(0) probably_damaging(0.998) TCGA-85-A511-01 12 91366700 91366700 T A EPYC Missense_Mutation p.H133L 0.15 tolerated(0.57) benign(0.002) TCGA-85-A511-01 12 95422204 95422204 T C NR2C1 Missense_Mutation p.Y497C 0.08 deleterious(0.03) probably_damaging(0.965) TCGA-85-A511-01 12 95868045 95868045 G T METAP2 Silent p.T30T 0.14 TCGA-85-A511-01 13 26125571 26125571 G A ATP8A2 Silent p.L329L 0.18 TCGA-85-A511-01 13 26402319 26402319 C A ATP8A2 Missense_Mutation p.L915M 0.12 tolerated(0.09) probably_damaging(1) TCGA-85-A511-01 13 35644231 35644231 C A NBEA Missense_Mutation p.L476I 0.22 deleterious(0.04) probably_damaging(0.997) TCGA-85-A511-01 13 58298754 58298754 G T PCDH17 Nonsense_Mutation p.E936* 0.26 TCGA-85-A511-01 13 72014736 72014736 T A DACH1 3'UTR 0.12 TCGA-85-A511-01 13 77672877 77672877 C G MYCBP2 Missense_Mutation p.M2766I 0.21 benign(0) TCGA-85-A511-01 14 23853758 23853758 G T MYH6 Silent p.R1820R 0.10 TCGA-85-A511-01 14 24520091 24520091 A G LRRC16B 5'Flank 0.19 TCGA-85-A511-01 14 28733747 28733747 G T BNIP3P1 RNA 0.37 TCGA-85-A511-01 14 59112178 59112178 G T DACT1 Missense_Mutation p.Q279H 0.24 deleterious(0) probably_damaging(0.999) TCGA-85-A511-01 14 69520902 69520902 T C DCAF5 Missense_Mutation p.N834S 0.29 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-85-A511-01 14 70633606 70633606 C G SLC8A3 Missense_Mutation p.V512L 0.22 tolerated(0.36) benign(0.001) TCGA-85-A511-01 14 92471812 92471812 C A TRIP11 Missense_Mutation p.Q836H 0.17 deleterious(0.01) possibly_damaging(0.784) TCGA-85-A511-01 14 94088404 94088404 G T UNC79 Missense_Mutation p.D1432Y 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-85-A511-01 15 25429491 25429491 A T SNORD115-8 RNA 0.13 TCGA-85-A511-01 15 25958954 25958954 C T ATP10A Silent p.L737L 0.08 TCGA-85-A511-01 15 28259975 28259975 C G OCA2 Missense_Mutation p.V331L 0.14 deleterious(0.02) probably_damaging(0.927) TCGA-85-A511-01 15 40627477 40627477 C A C15orf52 Missense_Mutation p.G496V 0.08 deleterious(0) probably_damaging(0.984) TCGA-85-A511-01 15 52517270 52517270 A T MYO5C Splice_Site p.X1122_splice 0.09 TCGA-85-A511-01 15 55974607 55974607 C G PRTG Missense_Mutation p.A211P 0.23 deleterious(0) possibly_damaging(0.857) TCGA-85-A511-01 15 73428350 73428350 G A NEO1 Missense_Mutation p.A333T 0.12 deleterious(0.04) probably_damaging(0.978) TCGA-85-A511-01 16 11114148 11114148 G T CLEC16A Missense_Mutation p.A468S 0.17 tolerated(0.29) probably_damaging(0.983) TCGA-85-A511-01 16 18540825 18540825 G C NOMO2 Missense_Mutation p.L602V 0.10 tolerated(0.16) possibly_damaging(0.729) TCGA-85-A511-01 16 24366271 24366271 C A CACNG3 Missense_Mutation p.A138E 0.16 deleterious(0) possibly_damaging(0.849) TCGA-85-A511-01 16 2546344 2546344 C T RP11-20I23.1 Silent p.R65R 0.20 TCGA-85-A511-01 16 57416897 57416897 A G CX3CL1 Missense_Mutation p.I383V 0.11 tolerated(1) benign(0) TCGA-85-A511-01 16 67318908 67318908 A G PLEKHG4 Missense_Mutation p.Q662R 0.17 tolerated(1) benign(0) TCGA-85-A511-01 16 67867773 67867773 C A CENPT 5'UTR 0.27 TCGA-85-A511-01 16 70934950 70934950 T A HYDIN Missense_Mutation p.Q3002L 0.07 possibly_damaging(0.607) TCGA-85-A511-01 16 85838592 85838592 G T COX4I1 Silent p.R41R 0.13 TCGA-85-A511-01 17 3773127 3773127 G A CAMKK1 Missense_Mutation p.P432S 0.35 deleterious(0) probably_damaging(1) TCGA-85-A511-01 17 46627941 46627941 C T HOXB3 Missense_Mutation p.V351M 0.44 deleterious(0) probably_damaging(0.947) TCGA-85-A511-01 17 56540381 56540381 A T HSF5 Missense_Mutation p.V435E 0.33 deleterious(0) probably_damaging(0.999) TCGA-85-A511-01 17 62009651 62009651 C A CD79B 5'UTR 0.21 TCGA-85-A511-01 17 74005966 74005966 T C EVPL Missense_Mutation p.K1107R 0.21 tolerated(0.15) benign(0.014) TCGA-85-A511-01 17 7577568 7577568 C A TP53 Missense_Mutation p.C238F 0.32 deleterious(0) probably_damaging(1) TCGA-85-A511-01 17 78023904 78023904 G T CCDC40 Silent p.L327L 0.28 TCGA-85-A511-01 17 79991360 79991360 C T RAC3 Silent p.L111L 0.14 TCGA-85-A511-01 18 14542891 14542891 G A POTEC Silent p.D85D 0.15 TCGA-85-A511-01 18 30517845 30517845 G T CCDC178 3'UTR 0.27 TCGA-85-A511-01 18 43422158 43422158 C G SIGLEC15 3'UTR 0.09 TCGA-85-A511-01 18 43422159 43422159 C T SIGLEC15 3'UTR 0.09 TCGA-85-A511-01 18 7037687 7037687 G C LAMA1 Missense_Mutation p.Q543E 0.20 tolerated(0.17) benign(0.008) TCGA-85-A511-01 18 71740930 71740930 T C FBXO15 Silent p.E433E 0.16 TCGA-85-A511-01 19 15300125 15300125 G C NOTCH3 Missense_Mutation p.T384R 0.07 tolerated(0.08) probably_damaging(0.996) TCGA-85-A511-01 19 18376597 18376597 G C KIAA1683 Missense_Mutation p.Q585E 0.07 tolerated(0.17) benign(0.275) TCGA-85-A511-01 19 18779585 18779585 G T KLHL26 Missense_Mutation p.G460C 0.21 deleterious(0) possibly_damaging(0.894) TCGA-85-A511-01 19 19030045 19030045 G T COPE Missense_Mutation p.A38E 0.21 deleterious(0) probably_damaging(0.973) TCGA-85-A511-01 19 31767416 31767416 C A TSHZ3 3'UTR 0.17 TCGA-85-A511-01 19 36633617 36633617 A T CAPNS1 Nonsense_Mutation p.R103* 0.16 TCGA-85-A511-01 19 44947182 44947182 C G ZNF229 5'UTR 0.16 TCGA-85-A511-01 19 45681478 45681478 C A TRAPPC6A 5'UTR 0.25 TCGA-85-A511-01 19 49131769 49131769 G A SPHK2 Intron 0.14 TCGA-85-A511-01 19 52273098 52273098 T A FPR2 3'UTR 0.27 TCGA-85-A511-01 19 57286657 57286657 T C ZIM2 Missense_Mutation p.N328S 0.10 tolerated(0.37) benign(0.06) TCGA-85-A511-01 19 57640338 57640338 C G USP29 Missense_Mutation p.L99V 0.12 deleterious(0) probably_damaging(0.991) TCGA-85-A511-01 19 58064046 58064046 C T ZNF550 Intron 0.17 TCGA-85-A511-01 19 58427748 58427748 T A ZNF417 Missense_Mutation p.Q11L 0.13 tolerated(0.15) benign(0.021) TCGA-85-A511-01 19 8151127 8151127 A G FBN3 Silent p.C2279C 0.19 TCGA-85-A511-01 19 9049905 9049905 C A MUC16 Missense_Mutation p.G10576W 0.15 possibly_damaging(0.687) TCGA-85-A511-01 19 9071372 9071372 G C MUC16 Missense_Mutation p.I5358M 0.08 unknown(0) TCGA-85-A511-01 19 9072465 9072465 G C MUC16 Nonsense_Mutation p.S4994* 0.08 TCGA-85-A511-01 1 100983836 100983836 A T CDC14A Nonstop_Mutation p.*595Yext*41 0.29 TCGA-85-A511-01 1 114447404 114447404 T C AP4B1 5'UTR 0.30 TCGA-85-A511-01 1 118634253 118634253 C A SPAG17 Silent p.L445L 0.21 TCGA-85-A511-01 1 151377934 151377934 C G POGZ Missense_Mutation p.E1193Q 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-85-A511-01 1 157559243 157559243 C T FCRL4 Missense_Mutation p.A20T 0.12 tolerated(0.25) benign(0.015) TCGA-85-A511-01 1 157767573 157767573 T C FCRL1 Intron 0.33 TCGA-85-A511-01 1 158736093 158736093 C G OR6N1 Missense_Mutation p.C127S 0.19 deleterious(0) probably_damaging(0.971) TCGA-85-A511-01 1 159799809 159799809 G A SLAMF8 Missense_Mutation p.R65Q 0.06 tolerated(0.31) benign(0.013) TCGA-85-A511-01 1 177930048 177930048 G A SEC16B Missense_Mutation p.P272S 0.24 deleterious(0.04) possibly_damaging(0.468) TCGA-85-A511-01 1 197144171 197144171 T C ZBTB41 Missense_Mutation p.S652G 0.09 deleterious(0) probably_damaging(0.989) TCGA-85-A511-01 1 198723408 198723408 C A PTPRC Missense_Mutation p.Q1174K 0.25 tolerated(0.15) benign(0.063) TCGA-85-A511-01 1 211842581 211842581 C T NEK2 Missense_Mutation p.G287R 0.10 tolerated(0.67) benign(0.003) TCGA-85-A511-01 1 214557590 214557590 C A PTPN14 Silent p.T536T 0.18 TCGA-85-A511-01 1 228646009 228646010 - G HIST3H2BB Frame_Shift_Ins p.I62Hfs*8 0.16 TCGA-85-A511-01 1 229771605 229771605 G A URB2 Silent p.L415L 0.08 TCGA-85-A511-01 1 237843842 237843842 A T RYR2 Silent p.G2994G 0.20 TCGA-85-A511-01 1 248059761 248059761 C G OR2W3 Silent p.T291T 0.18 TCGA-85-A511-01 1 248263029 248263029 G A OR2L13 Missense_Mutation p.A118T 0.25 deleterious(0.04) benign(0.373) TCGA-85-A511-01 1 248551626 248551626 C A OR2T6 Silent p.A239A 0.16 TCGA-85-A511-01 1 248737894 248737894 G T OR2T34 Missense_Mutation p.H55Q 0.08 tolerated(0.21) benign(0.125) TCGA-85-A511-01 1 27190100 27190100 G T SFN Nonsense_Mutation p.E133* 0.08 TCGA-85-A511-01 1 39853046 39853046 T A MACF1 Missense_Mutation p.N2782K 0.25 benign(0.155) TCGA-85-A511-01 1 46782321 46782321 G TA UQCRH 3'UTR 0.16 TCGA-85-A511-01 1 55182369 55182369 G T TTC4 Missense_Mutation p.D70Y 0.14 deleterious(0) possibly_damaging(0.634) TCGA-85-A511-01 1 62738903 62738903 G T KANK4 Missense_Mutation p.P625T 0.24 tolerated(1) benign(0.009) TCGA-85-A511-01 1 66102383 66102383 G A LEPR Silent p.L1061L 0.11 TCGA-85-A511-01 1 77876709 77876709 G T AK5 Missense_Mutation p.S312I 0.13 deleterious(0.02) possibly_damaging(0.894) TCGA-85-A511-01 1 86488657 86488657 C A COL24A1 Missense_Mutation p.A695S 0.29 tolerated(0.82) benign(0.001) TCGA-85-A511-01 20 13610735 13610735 T C TASP1 5'UTR 0.12 TCGA-85-A511-01 20 13912290 13912290 C T SEL1L2 Missense_Mutation p.G81E 0.08 tolerated(0.64) benign(0.017) TCGA-85-A511-01 20 16360213 16360213 C A KIF16B Missense_Mutation p.D812Y 0.17 deleterious_low_confidence(0) possibly_damaging(0.873) TCGA-85-A511-01 20 20079319 20079319 G A C20orf26 Silent p.G240G 0.19 TCGA-85-A511-01 20 2308901 2308901 A G TGM3 Missense_Mutation p.K408R 0.16 tolerated(0.38) benign(0) TCGA-85-A511-01 20 3804605 3804605 G T AP5S1 Silent p.V88V 0.21 TCGA-85-A511-01 20 43384684 43384684 C T RIMS4 3'UTR 0.24 TCGA-85-A511-01 20 48600426 48600426 C T SNAI1 Missense_Mutation p.L50F 0.19 deleterious(0.04) probably_damaging(0.998) TCGA-85-A511-01 21 31768787 31768787 G T KRTAP13-1 Missense_Mutation p.R128I 0.13 deleterious(0) probably_damaging(0.954) TCGA-85-A511-01 22 21991424 21991424 C A CCDC116 3'UTR 0.24 TCGA-85-A511-01 22 30405112 30405112 C T MTMR3 Missense_Mutation p.P372L 0.07 deleterious(0) probably_damaging(0.957) TCGA-85-A511-01 22 35481705 35481705 C G ISX 3'UTR 0.10 TCGA-85-A511-01 22 46684484 46684484 G A TTC38 Missense_Mutation p.E361K 0.15 tolerated(0.82) benign(0.001) TCGA-85-A511-01 2 101009734 101009734 G T CHST10 Nonsense_Mutation p.Y348* 0.29 TCGA-85-A511-01 2 113331232 113331232 G A POLR1B Missense_Mutation p.D789N 0.09 tolerated(0.3) benign(0.005) TCGA-85-A511-01 2 113331369 113331369 G A POLR1B Silent p.G834G 0.07 TCGA-85-A511-01 2 133403882 133403882 T A GPR39 3'UTR 0.29 TCGA-85-A511-01 2 141135819 141135819 G T LRP1B Missense_Mutation p.A3523D 0.29 possibly_damaging(0.887) TCGA-85-A511-01 2 163128822 163128822 C T IFIH1 Missense_Mutation p.E844K 0.14 deleterious(0) probably_damaging(0.983) TCGA-85-A511-01 2 167760184 167760184 C A XIRP2 Nonsense_Mutation p.Y64* 0.18 TCGA-85-A511-01 2 170131745 170131745 C A LRP2 Missense_Mutation p.K592N 0.15 possibly_damaging(0.77) TCGA-85-A511-01 2 171243745 171243745 C A MYO3B Missense_Mutation p.P502T 0.21 tolerated(0.25) benign(0.038) TCGA-85-A511-01 2 185802629 185802629 G T ZNF804A Missense_Mutation p.V836L 0.19 tolerated(0.66) benign(0) TCGA-85-A511-01 2 202899958 202899958 G T FZD7 Silent p.G196G 0.12 TCGA-85-A511-01 2 220424007 220424007 C T OBSL1 Missense_Mutation p.G1056R 0.20 deleterious(0.02) possibly_damaging(0.884) TCGA-85-A511-01 2 27317385 27317385 C T KHK Missense_Mutation p.R84C 0.08 tolerated(0.08) benign(0.001) TCGA-85-A511-01 2 27600823 27600823 C A ZNF513 Silent p.R405R 0.13 TCGA-85-A511-01 2 38804649 38804649 T A HNRNPLL Missense_Mutation p.Q271H 0.10 tolerated(0.09) benign(0.015) TCGA-85-A511-01 2 39050232 39050232 T A DHX57 Missense_Mutation p.D1065V 0.11 deleterious(0) probably_damaging(1) TCGA-85-A511-01 2 69093042 69093042 G A BMP10 Silent p.F332F 0.26 TCGA-85-A511-01 2 89544355 89544355 C T IGKV2-30 Missense_Mutation p.S90N 0.11 deleterious(0) possibly_damaging(0.681) TCGA-85-A511-01 2 98418896 98418896 T C TMEM131 Silent p.V882V 0.12 TCGA-85-A511-01 3 114057686 114057686 C A ZBTB20 3'UTR 0.22 TCGA-85-A511-01 3 126224802 126224802 C T UROC1 Missense_Mutation p.V219I 0.11 deleterious(0.02) benign(0.008) TCGA-85-A511-01 3 138724420 138724420 G A PRR23A Missense_Mutation p.L231F 0.40 deleterious(0) possibly_damaging(0.849) TCGA-85-A511-01 3 151055421 151055421 C A P2RY12 3'UTR 0.23 TCGA-85-A511-01 3 158980400 158980400 C A IQCJ-SCHIP1 Silent p.S73S 0.43 TCGA-85-A511-01 3 185191357 185191357 C G MAP3K13 Silent p.P746P 0.50 TCGA-85-A511-01 3 186338611 186338611 A G AHSG Silent p.E332E 0.44 TCGA-85-A511-01 3 186358167 186358167 A T FETUB 5'UTR 0.41 TCGA-85-A511-01 3 187419944 187419944 A T RTP2 5'UTR 0.06 TCGA-85-A511-01 3 30691851 30691851 C T TGFBR2 Missense_Mutation p.S143F 0.15 deleterious(0) possibly_damaging(0.756) TCGA-85-A511-01 3 3111846 3111846 C T IL5RA 3'UTR 0.10 TCGA-85-A511-01 3 39229228 39229228 C T XIRP1 Missense_Mutation p.R570Q 0.07 tolerated(0.1) benign(0.025) TCGA-85-A511-01 3 46485044 46485044 C A LTF Missense_Mutation p.G515W 0.08 deleterious(0) probably_damaging(1) TCGA-85-A511-01 3 49160976 49160976 C G LAMB2 Missense_Mutation p.A1296P 0.08 tolerated(0.2) benign(0.421) TCGA-85-A511-01 3 54872603 54872603 G C CACNA2D3 Missense_Mutation p.K493N 0.15 tolerated(0.33) benign(0.021) TCGA-85-A511-01 3 62355835 62355835 G T FEZF2 Missense_Mutation p.H435N 0.13 deleterious(0) possibly_damaging(0.728) TCGA-85-A511-01 3 63601160 63601160 G C SYNPR 3'UTR 0.10 TCGA-85-A511-01 3 78710401 78710401 T A ROBO1 Missense_Mutation p.Q700L 0.27 tolerated(0.07) probably_damaging(0.968) TCGA-85-A511-01 3 98600569 98600569 G T DCBLD2 Missense_Mutation p.T83N 0.28 deleterious(0) probably_damaging(0.997) TCGA-85-A511-01 4 110865086 110865086 G C EGF Missense_Mutation p.E200Q 0.10 tolerated(0.16) benign(0.066) TCGA-85-A511-01 4 113353070 113353070 A G ALPK1 Silent p.G789G 0.14 TCGA-85-A511-01 4 113540531 113540531 G T C4orf21 Missense_Mutation p.L223I 0.18 tolerated(0.39) benign(0.044) TCGA-85-A511-01 4 158256972 158256972 G T GRIA2 Silent p.G472G 0.14 TCGA-85-A511-01 4 164087733 164087733 C A NAF1 Silent p.G49G 0.19 TCGA-85-A511-01 4 1918612 1918612 G T WHSC1 Missense_Mutation p.A259S 0.07 tolerated(0.49) benign(0.091) TCGA-85-A511-01 4 2659556 2659556 G T FAM193A Missense_Mutation p.M155I 0.17 tolerated(0.09) benign(0.001) TCGA-85-A511-01 4 46994938 46994938 G C GABRA4 Missense_Mutation p.Q38E 0.17 tolerated(0.86) benign(0) TCGA-85-A511-01 4 69416437 69416437 C G UGT2B17 Missense_Mutation p.R424T 0.07 tolerated(1) benign(0.014) TCGA-85-A511-01 4 70513185 70513185 A G UGT2A1 Missense_Mutation p.F60L 0.16 tolerated(1) benign(0.044) TCGA-85-A511-01 4 71275205 71275205 G A PROL1 Missense_Mutation p.D54N 0.11 tolerated_low_confidence(0.32) benign(0.001) TCGA-85-A511-01 4 71396963 71396963 G A AMTN Missense_Mutation p.G189S 0.18 deleterious(0.05) probably_damaging(1) TCGA-85-A511-01 4 77283470 77283470 T G CCDC158 Splice_Site p.X611_splice 0.28 TCGA-85-A511-01 4 877870 877870 C A GAK Missense_Mutation p.A404S 0.10 deleterious(0.04) possibly_damaging(0.493) TCGA-85-A511-01 4 94138170 94138171 - A GRID2 Intron 0.12 TCGA-85-A511-01 5 140188086 140188086 G T PCDHA4 Silent p.T438T 0.29 TCGA-85-A511-01 5 140229308 140229308 G T PCDHA9 Missense_Mutation p.D410Y 0.23 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-85-A511-01 5 140723623 140723623 G A PCDHGA3 Missense_Mutation p.R8Q 0.19 tolerated_low_confidence(0.22) benign(0.008) TCGA-85-A511-01 5 160063317 160063317 C G ATP10B Splice_Site p.X334_splice 0.22 TCGA-85-A511-01 5 24487949 24487949 G A CDH10 Silent p.Y730Y 0.15 TCGA-85-A511-01 5 24493010 24493010 C T CDH10 Missense_Mutation p.D514N 0.11 deleterious(0) possibly_damaging(0.903) TCGA-85-A511-01 5 24505252 24505252 C A CDH10 Missense_Mutation p.W454C 0.14 deleterious(0) possibly_damaging(0.529) TCGA-85-A511-01 5 24505253 24505253 C A CDH10 Missense_Mutation p.W454L 0.13 deleterious(0.04) benign(0.038) TCGA-85-A511-01 5 31305365 31305365 G T CDH6 Missense_Mutation p.G362W 0.26 deleterious(0) probably_damaging(0.99) TCGA-85-A511-01 5 35876474 35876474 A T IL7R Missense_Mutation p.Q422H 0.26 deleterious(0.02) probably_damaging(0.991) TCGA-85-A511-01 5 82499502 82499502 G A XRCC4 Missense_Mutation p.R205Q 0.11 tolerated(0.42) benign(0) TCGA-85-A511-01 6 111306276 111306276 A T RPF2 Nonsense_Mutation p.K31* 0.18 TCGA-85-A511-01 6 128135009 128135009 G C THEMIS Nonsense_Mutation p.Y259* 0.20 TCGA-85-A511-01 6 133005566 133005566 C T VNN1 Missense_Mutation p.E423K 0.15 deleterious(0.01) benign(0.345) TCGA-85-A511-01 6 139164188 139164188 G T ECT2L Missense_Mutation p.G139C 0.12 deleterious(0) probably_damaging(0.99) TCGA-85-A511-01 6 143074988 143074988 G A HIVEP2 Silent p.S2199S 0.09 TCGA-85-A511-01 6 152642457 152642457 C T SYNE1 Silent p.K5384K 0.31 TCGA-85-A511-01 6 155743923 155743923 C T NOX3 Missense_Mutation p.V405I 0.21 tolerated(0.63) benign(0.004) TCGA-85-A511-01 6 26032236 26032236 C A HIST1H3B Missense_Mutation p.R18L 0.22 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-85-A511-01 6 29430089 29430089 T A OR2H1 Silent p.S181S 0.23 TCGA-85-A511-01 6 32139087 32139087 C T AGPAT1 Missense_Mutation p.V63I 0.11 tolerated(0.06) benign(0.087) TCGA-85-A511-01 6 32411210 32411210 T C HLA-DRA Missense_Mutation p.W193R 0.16 deleterious(0.01) benign(0.088) TCGA-85-A511-01 6 39845998 39845998 G T DAAM2 Missense_Mutation p.V441L 0.28 tolerated(0.39) probably_damaging(0.946) TCGA-85-A511-01 6 47763272 47763272 C A OPN5 Missense_Mutation p.S243R 0.15 tolerated(0.13) benign(0.053) TCGA-85-A511-01 6 50682985 50682985 T C TFAP2D Missense_Mutation p.Y66H 0.17 tolerated(0.43) possibly_damaging(0.86) TCGA-85-A511-01 6 87965043 87965043 G A ZNF292 Missense_Mutation p.D566N 0.22 tolerated(0.15) benign(0.225) TCGA-85-A511-01 6 87965530 87965530 G T ZNF292 Missense_Mutation p.R728M 0.10 deleterious(0) probably_damaging(0.999) TCGA-85-A511-01 6 88120312 88120312 G A C6ORF165 Missense_Mutation p.V40I 0.16 tolerated(0.05) benign(0.053) TCGA-85-A511-01 7 100678925 100678925 A T MUC17 Missense_Mutation p.S1410C 0.13 unknown(0) TCGA-85-A511-01 7 102760119 102760119 T A NAPEPLD Silent p.A282A 0.14 TCGA-85-A511-01 7 112724013 112724013 G T GPR85 Missense_Mutation p.T255N 0.13 deleterious(0.01) benign(0.403) TCGA-85-A511-01 7 114329982 114329982 G A FOXP2 3'UTR 0.09 TCGA-85-A511-01 7 121769529 121769529 T A AASS Silent p.G91G 0.08 TCGA-85-A511-01 7 138258282 138258282 A T TRIM24 Missense_Mutation p.N637Y 0.16 deleterious(0) benign(0.231) TCGA-85-A511-01 7 138603041 138603041 G A KIAA1549 Missense_Mutation p.S444L 0.07 deleterious(0) probably_damaging(0.997) TCGA-85-A511-01 7 150912141 150912141 C A ABCF2 Missense_Mutation p.G520W 0.23 deleterious(0) probably_damaging(1) TCGA-85-A511-01 7 154379504 154379504 C A DPP6 Intron 0.14 TCGA-85-A511-01 7 19015457 19015457 G T HDAC9 Silent p.V1017V 0.15 TCGA-85-A511-01 7 4260965 4260965 C T SDK1 Silent p.T1932T 0.29 TCGA-85-A511-01 7 44737219 44737219 C T OGDH Silent p.F732F 0.17 TCGA-85-A511-01 7 82430863 82430863 C A PCLO Missense_Mutation p.G4993V 0.09 unknown(0) TCGA-85-A511-01 7 84666212 84666212 G A SEMA3D Missense_Mutation p.P395L 0.09 deleterious(0) probably_damaging(1) TCGA-85-A511-01 8 101300412 101300412 G C RNF19A 5'UTR 0.12 TCGA-85-A511-01 8 10480497 10480497 A C RP1L1 Missense_Mutation p.V72G 0.14 probably_damaging(0.993) TCGA-85-A511-01 8 110451148 110451148 G T PKHD1L1 Missense_Mutation p.K1261N 0.23 tolerated(0.2) benign(0.243) TCGA-85-A511-01 8 110457036 110457036 G T PKHD1L1 Silent p.T1646T 0.19 TCGA-85-A511-01 8 134042093 134042093 G T TG Missense_Mutation p.G2355V 0.20 deleterious(0) probably_damaging(1) TCGA-85-A511-01 8 37602316 37602316 A T ERLIN2 Intron 0.25 TCGA-85-A511-01 8 42585736 42585736 G T CHRNB3 Splice_Site p.X84_splice 0.19 TCGA-85-A511-01 8 80677709 80677709 G C HEY1 Missense_Mutation p.P214R 0.24 tolerated(0.23) benign(0.265) TCGA-85-A511-01 8 99139948 99139948 G T POP1 Missense_Mutation p.G90C 0.26 deleterious(0) probably_damaging(0.999) TCGA-85-A511-01 9 107367845 107367845 T C OR13C2 Missense_Mutation p.R22G 0.20 tolerated(0.09) benign(0.004) TCGA-85-A511-01 9 118164403 118164403 G C DEC1 Nonstop_Mutation p.*71Sext*2 0.19 TCGA-85-A511-01 9 133355166 133355166 T C ASS1 Missense_Mutation p.F251S 0.24 deleterious(0) possibly_damaging(0.765) TCGA-85-A511-01 9 140732914 140732914 G T EHMT1 3'Flank 0.25 TCGA-85-A511-01 9 72938406 72938406 C G SMC5 Missense_Mutation p.L720V 0.06 deleterious(0.03) benign(0.008) TCGA-85-A511-01 9 78638710 78638710 G C PCSK5 Missense_Mutation p.W156C 0.22 deleterious(0) probably_damaging(1) TCGA-85-A511-01 X 12904618 12904618 G T TLR7 Missense_Mutation p.G331W 0.24 deleterious(0) probably_damaging(0.952) TCGA-85-A511-01 X 12904619 12904619 G T TLR7 Missense_Mutation p.G331V 0.23 deleterious(0.01) possibly_damaging(0.493) TCGA-85-A511-01 X 130419739 130419739 A T IGSF1 Splice_Site p.X127_splice 0.29 TCGA-85-A511-01 X 151900082 151900082 G T MAGEA12 Missense_Mutation p.A240E 0.30 deleterious(0) benign(0.019) TCGA-85-A511-01 X 19507028 19507028 A G MAP3K15 Missense_Mutation p.L140P 0.09 deleterious(0) probably_damaging(0.998) TCGA-85-A511-01 X 34149786 34149786 G T FAM47A Missense_Mutation p.P204T 0.25 deleterious(0) possibly_damaging(0.844) TCGA-85-A511-01 X 34149794 34149794 G T FAM47A Missense_Mutation p.P201Q 0.20 tolerated(0.14) probably_damaging(0.996) TCGA-85-A511-01 X 38145180 38145180 C A RPGR Missense_Mutation p.E1024D 0.22 unknown(0) TCGA-85-A511-01 X 73062534 73062534 G C XIST RNA 0.20 TCGA-85-A511-01 X 91874049 91874049 G A PCDH11X 3'UTR 0.27 TCGA-85-A512-01 10 101458401 101458401 G A ENTPD7 Missense_Mutation p.R374Q 0.25 deleterious(0.04) benign(0.298) TCGA-85-A512-01 10 102286824 102286824 C T NDUFB8 Missense_Mutation p.D74N 0.30 tolerated(0.05) possibly_damaging(0.554) TCGA-85-A512-01 10 104139322 104139322 C T GBF1 Nonsense_Mutation p.Q1563* 0.40 TCGA-85-A512-01 10 108459101 108459101 T C SORCS1 Silent p.Q428Q 0.35 TCGA-85-A512-01 10 117024719 117024719 C G ATRNL1 Silent p.V579V 0.34 TCGA-85-A512-01 10 118969723 118969723 G C KCNK18 Missense_Mutation p.K356N 0.31 deleterious(0) probably_damaging(0.99) TCGA-85-A512-01 10 121214498 121214498 G C GRK5 Missense_Mutation p.K564N 0.41 tolerated(0.28) benign(0.023) TCGA-85-A512-01 10 128193100 128193100 C T C10orf90 Nonsense_Mutation p.W223* 0.40 TCGA-85-A512-01 10 16967643 16967643 A C CUBN Missense_Mutation p.F2134L 0.26 deleterious(0) probably_damaging(0.967) TCGA-85-A512-01 10 17195448 17195448 T C TRDMT1 Intron 0.50 TCGA-85-A512-01 10 18280126 18280126 A G SLC39A12 Missense_Mutation p.H439R 0.19 tolerated(0.25) benign(0.356) TCGA-85-A512-01 10 38406653 38406653 C T ZNF37A Nonsense_Mutation p.Q192* 0.06 TCGA-85-A512-01 10 50531240 50531240 G T C10orf71 Missense_Mutation p.G217V 0.29 deleterious(0.02) possibly_damaging(0.804) TCGA-85-A512-01 10 55581910 55581910 T A PCDH15 Missense_Mutation p.K1861M 0.38 deleterious_low_confidence(0) unknown(0) TCGA-85-A512-01 10 61815737 61815737 A G ANK3 Silent p.F4248F 0.32 TCGA-85-A512-01 10 75577292 75577294 TAA - CAMK2G In_Frame_Del p.I429del 0.40 TCGA-85-A512-01 10 84718786 84718786 G A NRG3 Missense_Mutation p.M413I 0.35 tolerated(0.16) benign(0.068) TCGA-85-A512-01 11 107799383 107799384 - T RAB39A Frame_Shift_Ins p.Q30Hfs*65 0.10 TCGA-85-A512-01 11 123886758 123886758 C A OR10G4 Silent p.T159T 0.38 TCGA-85-A512-01 11 14278234 14278234 T C SPON1 RNA 0.55 TCGA-85-A512-01 11 14991521 14991521 C A CALCA Missense_Mutation p.A63S 0.63 tolerated(0.05) possibly_damaging(0.589) TCGA-85-A512-01 11 4674554 4674554 T C OR51E1 Silent p.F266F 0.55 TCGA-85-A512-01 11 50003939 50003939 G T OR4C12 Nonsense_Mutation p.Y33* 0.32 TCGA-85-A512-01 11 55111075 55111075 C A OR4A16 Silent p.I133I 0.39 TCGA-85-A512-01 11 55681382 55681382 A T OR5W2 Nonsense_Mutation p.L226* 0.30 TCGA-85-A512-01 11 59382789 59382789 G A OSBP Silent p.L117L 0.35 TCGA-85-A512-01 11 59608676 59608676 G A GIF Silent p.S211S 0.35 TCGA-85-A512-01 11 60637315 60637315 G C ZP1 Silent p.L208L 0.38 TCGA-85-A512-01 11 6417027 6417027 C - APBB1 Frame_Shift_Del p.A650Lfs*34 0.37 TCGA-85-A512-01 11 67166511 67166511 C T PPP1CA Nonsense_Mutation p.W227* 0.39 TCGA-85-A512-01 11 71502784 71502784 G C FAM86C1 Intron 0.42 TCGA-85-A512-01 11 76637682 76637682 G C ACER3 Missense_Mutation p.R62P 0.32 deleterious(0) probably_damaging(0.999) TCGA-85-A512-01 11 83252855 83252855 G A DLG2 Nonsense_Mutation p.Q663* 0.40 TCGA-85-A512-01 12 100727981 100727981 A G SCYL2 Missense_Mutation p.N600S 0.39 tolerated(1) benign(0) TCGA-85-A512-01 12 108642086 108642086 T C WSCD2 Missense_Mutation p.L555P 0.51 deleterious(0.05) probably_damaging(0.969) TCGA-85-A512-01 12 113447184 113447184 T A OAS2 Intron 0.43 TCGA-85-A512-01 12 120565506 120565506 T C GCN1L1 3'UTR 0.41 TCGA-85-A512-01 12 121687617 121687617 C T CAMKK2 Silent p.E432E 0.33 TCGA-85-A512-01 12 29524505 29524505 T C ERGIC2 Missense_Mutation p.K21R 0.21 deleterious(0) probably_damaging(0.996) TCGA-85-A512-01 12 33532853 33532853 C T SYT10 Missense_Mutation p.D472N 0.24 tolerated(0.21) probably_damaging(0.992) TCGA-85-A512-01 12 49420654 49420654 C A KMT2D Missense_Mutation p.C5032F 0.33 unknown(0) TCGA-85-A512-01 12 49426482 49426482 T C KMT2D Silent p.P4002P 0.31 TCGA-85-A512-01 12 7054954 7054954 T G C12orf57 Missense_Mutation p.L84V 0.42 tolerated(0.07) possibly_damaging(0.675) TCGA-85-A512-01 12 72343369 72343369 G A TPH2 Missense_Mutation p.G181E 0.30 deleterious(0) probably_damaging(0.999) TCGA-85-A512-01 13 42465672 42465672 C G VWA8 Missense_Mutation p.E179Q 0.52 deleterious(0) probably_damaging(1) TCGA-85-A512-01 14 101448324 101448324 G A SNORD114-21 RNA 0.51 TCGA-85-A512-01 14 102463611 102463611 G C DYNC1H1 Silent p.T1268T 0.43 TCGA-85-A512-01 14 21883744 21883744 C A CHD8 Missense_Mutation p.V653L 0.30 tolerated(0.06) benign(0.371) TCGA-85-A512-01 14 50877344 50877344 G C CDKL1 RNA 0.10 TCGA-85-A512-01 14 65220367 65220367 C T SPTB Missense_Mutation p.D2164N 0.58 tolerated(0.25) benign(0.003) TCGA-85-A512-01 14 70924864 70924864 G A ADAM21 Silent p.V216V 0.42 TCGA-85-A512-01 15 102291867 102291867 G A DNM1P47 RNA 0.17 TCGA-85-A512-01 15 20662966 20662966 C T HERC2P3 RNA 0.08 TCGA-85-A512-01 15 23811911 23811911 C A MKRN3 Missense_Mutation p.R328S 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-85-A512-01 15 24921322 24921322 G - NPAP1 Frame_Shift_Del p.N104Tfs*11 0.29 TCGA-85-A512-01 15 50853895 50853895 A T TRPM7 Missense_Mutation p.S1860T 0.47 deleterious_low_confidence(0.02) benign(0.202) TCGA-85-A512-01 15 69718411 69718411 C G KIF23 Missense_Mutation p.P246R 0.24 deleterious(0.02) possibly_damaging(0.861) TCGA-85-A512-01 15 75134489 75134490 - C ULK3 Frame_Shift_Ins p.D98Rfs*14 0.25 TCGA-85-A512-01 15 89169751 89169751 G T AEN Missense_Mutation p.G104V 0.50 tolerated(0.12) benign(0.005) TCGA-85-A512-01 16 2813481 2813481 G T SRRM2 Silent p.P984P 0.32 TCGA-85-A512-01 16 28167504 28167504 C G XPO6 Missense_Mutation p.E330Q 0.36 tolerated(0.09) benign(0.244) TCGA-85-A512-01 16 53493471 53493471 C T RBL2 Missense_Mutation p.H430Y 0.46 tolerated(0.06) benign(0.315) TCGA-85-A512-01 16 58742063 58742063 G A GOT2 3'UTR 0.68 TCGA-85-A512-01 16 69364063 69364063 G T PDF Silent p.P137P 1.00 TCGA-85-A512-01 17 10231393 10231393 G T MYH13 Missense_Mutation p.N827K 0.46 tolerated(0.25) probably_damaging(0.994) TCGA-85-A512-01 17 10539096 10539096 G T MYH3 Missense_Mutation p.Q1311K 0.52 deleterious(0.01) benign(0.067) TCGA-85-A512-01 17 27042062 27042062 A C RAB34 Missense_Mutation p.S255A 0.36 deleterious(0) possibly_damaging(0.894) TCGA-85-A512-01 17 3392596 3392596 G A ASPA Missense_Mutation p.M198I 0.61 tolerated(0.65) benign(0.004) TCGA-85-A512-01 17 37070635 37070635 A G LASP1 Missense_Mutation p.M139V 0.30 tolerated(0.54) benign(0) TCGA-85-A512-01 17 41931194 41931194 G T CD300LG Silent p.P167P 0.26 TCGA-85-A512-01 17 43531210 43531210 T - PLEKHM1 Frame_Shift_Del p.T670Hfs*41 0.29 TCGA-85-A512-01 17 47218740 47218740 C A B4GALNT2 Missense_Mutation p.P109Q 0.36 tolerated(0.35) benign(0.013) TCGA-85-A512-01 17 54940003 54940003 C T DGKE Nonsense_Mutation p.Q519* 0.29 TCGA-85-A512-01 17 7579582 7579583 - A TP53 Frame_Shift_Ins p.L35Ffs*8 0.40 TCGA-85-A512-01 17 79414117 79414117 A C RP11-1055B8.7 Silent p.S1073S 0.28 TCGA-85-A512-01 18 14542959 14542959 T A POTEC Nonsense_Mutation p.K63* 0.09 TCGA-85-A512-01 18 14803761 14803761 A T ANKRD30B Missense_Mutation p.D741V 0.11 deleterious(0.02) benign(0.25) TCGA-85-A512-01 18 5397107 5397107 T A EPB41L3 Missense_Mutation p.S931C 0.38 tolerated(0.08) possibly_damaging(0.469) TCGA-85-A512-01 18 67614163 67614163 G C CD226 Missense_Mutation p.F63L 0.65 tolerated(0.39) benign(0.348) TCGA-85-A512-01 18 6894863 6894863 G T ARHGAP28 Silent p.L467L 0.30 TCGA-85-A512-01 19 10265436 10265436 G A DNMT1 Missense_Mutation p.P553L 0.42 deleterious(0) probably_damaging(0.99) TCGA-85-A512-01 19 13991279 13991279 G A NANOS3 Missense_Mutation p.E181K 0.28 tolerated_low_confidence(0.81) unknown(0) TCGA-85-A512-01 19 15342845 15342845 G A EPHX3 Missense_Mutation p.R60W 0.24 deleterious(0) probably_damaging(0.998) TCGA-85-A512-01 19 38855555 38855555 T C CATSPERG Missense_Mutation p.C834R 0.63 deleterious(0) possibly_damaging(0.588) TCGA-85-A512-01 19 47422368 47422368 G C ARHGAP35 Missense_Mutation p.E146Q 0.62 deleterious(0) possibly_damaging(0.621) TCGA-85-A512-01 19 55501973 55501973 G A NLRP2 Missense_Mutation p.G881R 0.66 deleterious(0.03) possibly_damaging(0.751) TCGA-85-A512-01 19 58640358 58640358 G C ZNF329 Silent p.G171G 0.47 TCGA-85-A512-01 19 9075959 9075959 G C MUC16 Silent p.P3829P 0.39 TCGA-85-A512-01 1 100571388 100571388 T C SASS6 Missense_Mutation p.T494A 0.51 tolerated(0.72) benign(0.001) TCGA-85-A512-01 1 12907734 12907734 C A HNRNPCL1 Missense_Mutation p.A137S 0.43 tolerated(0.43) benign(0.263) TCGA-85-A512-01 1 143767385 143767385 T A PPIAL4G Missense_Mutation p.K155M 0.11 deleterious_low_confidence(0.01) benign(0.357) TCGA-85-A512-01 1 151377943 151377943 T C POGZ Missense_Mutation p.I1190V 0.22 tolerated(0.7) probably_damaging(0.986) TCGA-85-A512-01 1 153533865 153533865 C G S100A2 3'UTR 0.50 TCGA-85-A512-01 1 231076209 231076209 C A TTC13 Nonsense_Mutation p.G256* 0.24 TCGA-85-A512-01 1 243859016 243859016 C T AKT3 Missense_Mutation p.E17K 0.10 deleterious(0) probably_damaging(0.999) TCGA-85-A512-01 1 247655034 247655034 C T OR2W5 RNA 0.25 TCGA-85-A512-01 1 247836109 247836109 G A OR13G1 Silent p.L79L 0.61 TCGA-85-A512-01 1 248201473 248201473 C A OR2L13 Intron 0.20 TCGA-85-A512-01 1 248262725 248262725 G A OR2L13 Silent p.L16L 0.58 TCGA-85-A512-01 1 42047195 42047195 C A HIVEP3 Missense_Mutation p.A1092S 0.53 benign(0.008) TCGA-85-A512-01 1 94461725 94461725 C G ABCA4 Missense_Mutation p.Q2252H 0.65 deleterious(0.01) benign(0.076) TCGA-85-A512-01 20 23065354 23065354 G T CD93 Missense_Mutation p.S492R 0.41 tolerated(0.25) benign(0.004) TCGA-85-A512-01 20 23066469 23066469 C - CD93 Frame_Shift_Del p.E121Rfs*79 0.67 TCGA-85-A512-01 20 49218759 49218759 T A FAM65C Missense_Mutation p.E499D 0.36 tolerated(0.3) benign(0.003) TCGA-85-A512-01 20 55033507 55033507 G A CASS4 Missense_Mutation p.A689T 0.37 deleterious(0.02) benign(0.041) TCGA-85-A512-01 20 57769506 57769506 C A ZNF831 Silent p.P1144P 0.34 TCGA-85-A512-01 20 61167788 61167788 G C C20orf166 Silent p.T86T 0.19 TCGA-85-A512-01 20 9496753 9496753 A G LAMP5 Missense_Mutation p.Y115C 0.31 deleterious(0) probably_damaging(0.994) TCGA-85-A512-01 20 9496992 9496992 C T LAMP5 Silent p.F153F 0.46 TCGA-85-A512-01 21 31933487 31933487 T C KRTAP19-7 Missense_Mutation p.Y41C 0.34 deleterious_low_confidence(0.05) unknown(0) TCGA-85-A512-01 22 29533335 29533335 G A KREMEN1 Missense_Mutation p.V213M 0.11 tolerated(0.26) possibly_damaging(0.859) TCGA-85-A512-01 22 32756457 32756457 A G RFPL3 Missense_Mutation p.R198G 0.36 deleterious(0) possibly_damaging(0.819) TCGA-85-A512-01 22 39178712 39178712 C A DNAL4 Missense_Mutation p.D9Y 0.33 deleterious(0.01) benign(0.009) TCGA-85-A512-01 2 109089324 109089324 G A GCC2 Silent p.L943L 0.33 TCGA-85-A512-01 2 11367506 11367506 C G ROCK2 Missense_Mutation p.D248H 0.32 deleterious(0) probably_damaging(0.993) TCGA-85-A512-01 2 116594119 116594119 C A DPP10 Missense_Mutation p.S700Y 0.30 deleterious(0.01) possibly_damaging(0.473) TCGA-85-A512-01 2 136527365 136527365 G C UBXN4 Missense_Mutation p.R210T 0.32 deleterious(0) possibly_damaging(0.883) TCGA-85-A512-01 2 155099300 155099300 C T GALNT13 Missense_Mutation p.R190C 0.29 deleterious(0) probably_damaging(0.995) TCGA-85-A512-01 2 176964562 176964562 T C HOXD12 Silent p.Y11Y 0.33 TCGA-85-A512-01 2 179253822 179253822 A T OSBPL6 Missense_Mutation p.E773V 0.32 deleterious(0) probably_damaging(0.999) TCGA-85-A512-01 2 179408205 179408205 T G TTN Missense_Mutation p.R32165S 0.47 TCGA-85-A512-01 2 179449354 179449354 C G TTN Intron 0.41 TCGA-85-A512-01 2 185801168 185801168 A T ZNF804A Missense_Mutation p.S349C 0.37 tolerated(0.05) possibly_damaging(0.671) TCGA-85-A512-01 2 200245129 200245129 C G SATB2 Missense_Mutation p.E185D 0.48 tolerated(1) benign(0.017) TCGA-85-A512-01 2 201371698 201371698 G A KCTD18 Silent p.L14L 0.29 TCGA-85-A512-01 2 202900141 202900141 G A FZD7 Silent p.V257V 0.31 TCGA-85-A512-01 2 204022522 204022522 A G NBEAL1 Silent p.E1867E 0.30 TCGA-85-A512-01 2 206480311 206480311 A T PARD3B Missense_Mutation p.E1069V 0.31 deleterious(0.03) benign(0.062) TCGA-85-A512-01 2 210570330 210570330 G A MAP2 Silent p.K1537K 0.38 TCGA-85-A512-01 2 222301174 222301174 T G EPHA4 Missense_Mutation p.D764A 0.37 deleterious(0) probably_damaging(0.969) TCGA-85-A512-01 2 25194753 25194753 C A DNAJC27 Missense_Mutation p.K7N 0.29 deleterious(0.01) benign(0.405) TCGA-85-A512-01 2 32688346 32688346 C A BIRC6 Missense_Mutation p.A1613D 0.38 probably_damaging(0.996) TCGA-85-A512-01 2 79384697 79384697 C A REG3A Splice_Site p.X154_splice 0.04 TCGA-85-A512-01 2 80529330 80529330 G T LRRTM1 3'UTR 0.27 TCGA-85-A512-01 2 80529331 80529331 C T LRRTM1 3'UTR 0.27 TCGA-85-A512-01 2 89292365 89292365 C A IGKV1-8 Silent p.L11L 0.28 TCGA-85-A512-01 3 108117490 108117490 A G MYH15 Silent p.Y1729Y 0.34 TCGA-85-A512-01 3 108812300 108812300 C A MORC1 Missense_Mutation p.M224I 0.32 tolerated(0.33) benign(0.004) TCGA-85-A512-01 3 11061981 11061981 T A SLC6A1 Missense_Mutation p.M185K 0.58 tolerated(0.31) benign(0.063) TCGA-85-A512-01 3 121151863 121151863 T C POLQ Missense_Mutation p.K2521E 0.26 tolerated(0.15) benign(0.02) TCGA-85-A512-01 3 133327728 133327728 C T TOPBP1 Missense_Mutation p.G1418R 0.28 deleterious(0) probably_damaging(1) TCGA-85-A512-01 3 183882952 183882952 C T DVL3 Silent p.H217H 0.42 TCGA-85-A512-01 3 47129603 47129603 C A SETD2 Missense_Mutation p.Q1759H 0.46 deleterious(0.01) probably_damaging(0.997) TCGA-85-A512-01 3 74420525 74420525 A C CNTN3 Missense_Mutation p.N160K 0.51 deleterious(0.03) probably_damaging(0.999) TCGA-85-A512-01 3 74420528 74420528 G T CNTN3 Missense_Mutation p.F159L 0.52 deleterious(0.04) probably_damaging(0.997) TCGA-85-A512-01 4 113539867 113539867 T C C4orf21 Missense_Mutation p.N444S 0.52 tolerated(0.31) possibly_damaging(0.702) TCGA-85-A512-01 4 122251635 122251635 G T QRFPR Missense_Mutation p.L281I 0.66 deleterious(0.01) possibly_damaging(0.842) TCGA-85-A512-01 4 148406761 148406761 C T EDNRA Intron 0.64 TCGA-85-A512-01 4 151772037 151772037 C A LRBA Missense_Mutation p.E1281D 0.32 tolerated_low_confidence(0.58) benign(0.005) TCGA-85-A512-01 4 151773805 151773805 C T LRBA Missense_Mutation p.M1019I 0.40 tolerated_low_confidence(0.17) benign(0.008) TCGA-85-A512-01 4 151793868 151793868 G C LRBA Missense_Mutation p.I735M 0.58 deleterious(0) probably_damaging(0.996) TCGA-85-A512-01 4 153253771 153253771 C T FBXW7 Nonsense_Mutation p.W321* 0.71 TCGA-85-A512-01 4 20512744 20512744 C T SLIT2 Missense_Mutation p.R348C 0.60 deleterious(0) probably_damaging(0.999) TCGA-85-A512-01 4 4190599 4190599 G A OTOP1 Silent p.A590A 0.16 TCGA-85-A512-01 4 9982239 9982239 C A SLC2A9 Missense_Mutation p.G220C 0.67 deleterious(0) probably_damaging(0.998) TCGA-85-A512-01 5 13901453 13901453 C T DNAH5 Missense_Mutation p.A654T 0.06 possibly_damaging(0.787) TCGA-85-A512-01 5 140869460 140869460 G T PCDHGC5 Missense_Mutation p.G218V 0.56 deleterious(0) probably_damaging(1) TCGA-85-A512-01 5 178413136 178413136 G - GRM6 Frame_Shift_Del p.L707Cfs*6 0.35 TCGA-85-A512-01 5 26902757 26902757 G T CDH9 Missense_Mutation p.L361M 0.67 tolerated(0.13) benign(0.043) TCGA-85-A512-01 5 33576162 33576162 G C ADAMTS12 Missense_Mutation p.S1323R 0.61 deleterious(0.01) probably_damaging(0.966) TCGA-85-A512-01 5 35779335 35779335 C T SPEF2 Missense_Mutation p.P1445L 0.57 tolerated(0.06) probably_damaging(0.997) TCGA-85-A512-01 5 74865170 74865170 C T POLK Silent p.D87D 0.66 TCGA-85-A512-01 5 75906899 75906899 G A IQGAP2 Missense_Mutation p.R471K 0.58 tolerated(1) benign(0) TCGA-85-A512-01 6 101166125 101166125 C A ASCC3 Silent p.V635V 0.71 TCGA-85-A512-01 6 152768693 152768693 A C SYNE1 Missense_Mutation p.V1190G 0.76 benign(0.017) TCGA-85-A512-01 6 169648859 169648859 C A THBS2 Missense_Mutation p.A88S 0.79 deleterious(0) probably_damaging(0.998) TCGA-85-A512-01 6 50682937 50682937 A G TFAP2D Missense_Mutation p.T50A 0.29 tolerated(0.21) benign(0) TCGA-85-A512-01 6 51890076 51890076 G T PKHD1 Missense_Mutation p.T1511N 0.36 tolerated(0.6) benign(0.013) TCGA-85-A512-01 6 52656750 52656750 G A GSTA1 Missense_Mutation p.P192L 0.35 deleterious(0.02) possibly_damaging(0.876) TCGA-85-A512-01 6 56496804 56496804 G C DST Missense_Mutation p.I743M 0.34 probably_damaging(0.94) TCGA-85-A512-01 6 66205279 66205279 G T EYS Missense_Mutation p.L9M 0.47 deleterious_low_confidence(0.02) benign(0.189) TCGA-85-A512-01 6 88854705 88854705 G T CNR1 Missense_Mutation p.Q97K 0.22 tolerated(0.58) benign(0.006) TCGA-85-A512-01 7 11450907 11450907 T G THSD7A Missense_Mutation p.N1242T 0.51 tolerated(0.25) benign(0.011) TCGA-85-A512-01 7 127222319 127222319 C A GCC1 Nonsense_Mutation p.E693* 0.59 TCGA-85-A512-01 7 127231306 127231306 C T ARF5 Silent p.L166L 0.23 TCGA-85-A512-01 7 137028214 137028214 C T PTN 5'UTR 0.16 TCGA-85-A512-01 7 150935625 150935625 A G CHPF2 Missense_Mutation p.Q726R 0.50 tolerated(0.2) benign(0.348) TCGA-85-A512-01 7 154595634 154595634 A G DPP6 Missense_Mutation p.I490V 0.50 tolerated(0.17) benign(0.022) TCGA-85-A512-01 7 31013607 31013607 G T GHRHR Missense_Mutation p.C202F 0.63 deleterious(0) probably_damaging(0.998) TCGA-85-A512-01 7 77708381 77708381 T A MAGI2 Missense_Mutation p.I1197F 0.23 deleterious(0) probably_damaging(0.96) TCGA-85-A512-01 7 93098058 93098058 C G CALCR Missense_Mutation p.V182L 0.28 tolerated(1) benign(0.027) TCGA-85-A512-01 7 94991763 94991763 C A PON3 Missense_Mutation p.D273Y 0.47 deleterious(0) probably_damaging(1) TCGA-85-A512-01 8 103340017 103340017 G A UBR5 Silent p.C478C 0.32 TCGA-85-A512-01 8 11281812 11281812 C G FAM167A 3'UTR 0.39 TCGA-85-A512-01 8 113668518 113668518 G A CSMD3 Missense_Mutation p.L957F 0.34 tolerated(0.66) probably_damaging(1) TCGA-85-A512-01 8 113933956 113933956 A T CSMD3 Silent p.S511S 0.37 TCGA-85-A512-01 8 120868047 120868047 G A DSCC1 5'UTR 0.40 TCGA-85-A512-01 8 13357352 13357352 G A DLC1 Missense_Mutation p.P77S 0.38 tolerated_low_confidence(0.08) benign(0.017) TCGA-85-A512-01 8 139164384 139164384 G C FAM135B Missense_Mutation p.S778R 0.24 deleterious(0) probably_damaging(0.991) TCGA-85-A512-01 8 139164432 139164432 C A FAM135B Silent p.V762V 0.25 TCGA-85-A512-01 8 28998013 28998013 G T KIF13B Missense_Mutation p.A819D 0.23 tolerated(0.09) benign(0.395) TCGA-85-A512-01 8 36703126 36703126 G C KCNU1 Missense_Mutation p.V578L 0.32 tolerated(0.16) benign(0) TCGA-85-A512-01 8 48769843 48769843 C A PRKDC Silent p.A2160A 0.49 TCGA-85-A512-01 8 69028115 69028115 G C PREX2 Missense_Mutation p.D1092H 0.37 deleterious(0) possibly_damaging(0.831) TCGA-85-A512-01 9 109689983 109689983 G A ZNF462 Missense_Mutation p.A1264T 0.40 benign(0.083) TCGA-85-A512-01 9 120474885 120474885 A T TLR4 Missense_Mutation p.N160I 0.20 deleterious(0) probably_damaging(1) TCGA-85-A512-01 9 120476412 120476412 G C TLR4 Missense_Mutation p.R669T 0.26 tolerated(0.13) benign(0.015) TCGA-85-A512-01 9 121930492 121930492 G T BRINP1 Missense_Mutation p.Q386K 0.24 deleterious(0.02) possibly_damaging(0.678) TCGA-85-A512-01 9 130536585 130536585 A G SH2D3C Missense_Mutation p.Y67H 0.06 deleterious(0) probably_damaging(0.997) TCGA-85-A512-01 9 71098886 71098886 G A PGM5 Silent p.G467G 0.36 TCGA-85-A512-01 X 106845639 106845639 C T FRMPD3 Missense_Mutation p.A1490V 0.65 tolerated(0.13) benign(0.002) TCGA-85-A512-01 X 140335707 140335707 G T SPANXC Silent p.P79P 0.54 TCGA-85-A512-01 X 140335708 140335708 G T SPANXC Missense_Mutation p.P79H 0.54 deleterious(0.01) probably_damaging(0.944) TCGA-85-A512-01 X 20213188 20213188 T C RPS6KA3 Missense_Mutation p.H134R 0.78 deleterious(0) probably_damaging(1) TCGA-85-A512-01 X 35970049 35970049 A G CXorf22 Missense_Mutation p.K339E 0.74 deleterious(0) probably_damaging(0.956) TCGA-85-A512-01 X 72433836 72433836 C T NAP1L2 Missense_Mutation p.E165K 0.69 deleterious(0.05) probably_damaging(0.992) TCGA-85-A512-01 X 77380419 77380419 A C PGK1 Missense_Mutation p.T329P 0.62 tolerated(0.18) benign(0.033) TCGA-85-A512-01 X 79281109 79281109 T A TBX22 Missense_Mutation p.Y156N 0.72 deleterious(0) probably_damaging(0.996) TCGA-85-A512-01 X 84600941 84600941 G C POF1B Missense_Mutation p.I216M 0.64 tolerated_low_confidence(0.12) possibly_damaging(0.844) TCGA-85-A513-01 10 104118418 104118418 C T GBF1 Missense_Mutation p.P315S 0.07 tolerated(0.75) benign(0) TCGA-85-A513-01 10 105902064 105902064 C G WDR96 Missense_Mutation p.E1416Q 0.06 deleterious(0.01) possibly_damaging(0.72) TCGA-85-A513-01 11 19901436 19901436 A C NAV2 Missense_Mutation p.K178T 0.05 deleterious(0) probably_damaging(0.998) TCGA-85-A513-01 11 47806493 47806493 C T NUP160 Nonsense_Mutation p.W1324* 0.05 TCGA-85-A513-01 12 123482074 123482074 C T PITPNM2 Missense_Mutation p.V424M 0.13 deleterious(0) probably_damaging(0.997) TCGA-85-A513-01 13 41766418 41766418 G A KBTBD7 Missense_Mutation p.S659L 0.13 tolerated_low_confidence(0.21) probably_damaging(0.989) TCGA-85-A513-01 13 50589668 50589668 G C KCNRG Silent p.G13G 0.08 TCGA-85-A513-01 15 72648887 72648887 T G HEXA Missense_Mutation p.T109P 0.09 deleterious(0.05) benign(0.122) TCGA-85-A513-01 19 17516131 17516131 T C BST2 Missense_Mutation p.E85G 0.08 deleterious(0.02) probably_damaging(0.992) TCGA-85-A513-01 19 35230057 35230057 C T ZNF181 Missense_Mutation p.T5I 0.11 deleterious(0) probably_damaging(0.996) TCGA-85-A513-01 19 44622397 44622397 G T ZNF225 Silent p.L24L 0.06 TCGA-85-A513-01 19 58965181 58965181 C T ZNF324B Missense_Mutation p.T38I 0.09 tolerated(0.22) benign(0.175) TCGA-85-A513-01 1 150484830 150484830 G C ECM1 Missense_Mutation p.W389C 0.07 deleterious(0) probably_damaging(1) TCGA-85-A513-01 1 158639502 158639502 G A SPTA1 Silent p.D558D 0.11 TCGA-85-A513-01 1 183104223 183104223 C T LAMC1 Missense_Mutation p.A1349V 0.11 deleterious(0) probably_damaging(0.998) TCGA-85-A513-01 20 18379181 18379181 G T DZANK1 Missense_Mutation p.P508T 0.11 deleterious(0) probably_damaging(0.989) TCGA-85-A513-01 20 2291744 2291744 G A TGM3 Missense_Mutation p.R170Q 0.04 tolerated(0.28) benign(0.349) TCGA-85-A513-01 3 58095035 58095035 C T FLNB Missense_Mutation p.H729Y 0.15 tolerated(0.06) benign(0.233) TCGA-85-A513-01 4 100261757 100261757 G A ADH1C Silent p.R313R 0.09 TCGA-85-A513-01 4 145579960 145579960 C T HHIP Missense_Mutation p.A164V 0.07 tolerated(0.57) benign(0.007) TCGA-85-A513-01 7 53103417 53103417 C T POM121L12 Missense_Mutation p.A18V 0.17 tolerated_low_confidence(0.14) possibly_damaging(0.873) TCGA-85-A513-01 7 81334804 81334804 C T HGF Missense_Mutation p.G638R 0.15 deleterious(0.05) probably_damaging(0.996) TCGA-85-A513-01 7 99704354 99704354 C T AP4M1 Missense_Mutation p.P404L 0.12 deleterious(0) probably_damaging(1) TCGA-85-A513-01 8 125463114 125463114 G A TRMT12 5'UTR 0.12 TCGA-85-A513-01 8 145998712 145998712 C G ZNF34 Missense_Mutation p.R541P 0.08 deleterious(0.05) probably_damaging(0.965) TCGA-85-A513-01 8 77764917 77764917 G A ZFHX4 Silent p.L1920L 0.09 TCGA-85-A513-01 9 116022673 116022673 G A SLC31A1 Missense_Mutation p.A165T 0.05 deleterious(0.04) probably_damaging(0.984) TCGA-85-A513-01 X 100911880 100911880 G A ARMCX2 Missense_Mutation p.P232L 0.10 deleterious_low_confidence(0.04) benign(0.003) TCGA-85-A53L-01 10 105906032 105906032 C T WDR96 Missense_Mutation p.A1282T 0.26 deleterious(0.04) possibly_damaging(0.729) TCGA-85-A53L-01 10 115364461 115364461 G T NRAP Missense_Mutation p.D1378E 0.25 tolerated(0.22) benign(0.008) TCGA-85-A53L-01 10 12867678 12867678 G A CAMK1D Missense_Mutation p.S343N 0.21 tolerated(0.11) benign(0.083) TCGA-85-A53L-01 10 45891348 45891348 G A ALOX5 Missense_Mutation p.R132Q 0.08 deleterious(0) probably_damaging(1) TCGA-85-A53L-01 10 68526170 68526170 C A CTNNA3 Missense_Mutation p.R378L 0.31 deleterious(0) possibly_damaging(0.567) TCGA-85-A53L-01 10 73498379 73498379 A T CDH23 Missense_Mutation p.D1450V 0.18 deleterious(0) probably_damaging(0.975) TCGA-85-A53L-01 10 89692941 89692941 G C PTEN Missense_Mutation p.R142P 0.22 tolerated(0.18) possibly_damaging(0.845) TCGA-85-A53L-01 10 99640044 99640044 C G CRTAC1 Missense_Mutation p.R594P 0.20 deleterious_low_confidence(0) benign(0.424) TCGA-85-A53L-01 11 102221160 102221160 A G BIRC2 Missense_Mutation p.H192R 0.22 tolerated(0.22) benign(0.001) TCGA-85-A53L-01 11 105880390 105880390 G A MSANTD4 Missense_Mutation p.R304C 0.11 deleterious(0) benign(0.386) TCGA-85-A53L-01 11 120702603 120702603 C A GRIK4 Missense_Mutation p.S185Y 0.26 tolerated(1) probably_damaging(0.947) TCGA-85-A53L-01 11 120702604 120702604 C A GRIK4 Silent p.S185S 0.24 TCGA-85-A53L-01 11 124294488 124294488 C A OR8B4 Missense_Mutation p.V94L 0.15 tolerated_low_confidence(0.16) benign(0.012) TCGA-85-A53L-01 11 19213964 19213964 C A CSRP3 Missense_Mutation p.G11V 0.14 deleterious(0.05) possibly_damaging(0.725) TCGA-85-A53L-01 11 43904179 43904179 G C ALKBH3 5'UTR 0.19 TCGA-85-A53L-01 11 46905519 46905519 G C LRP4 Missense_Mutation p.R839G 0.15 deleterious(0) probably_damaging(0.999) TCGA-85-A53L-01 11 48286167 48286167 G A OR4X1 Missense_Mutation p.C252Y 0.30 deleterious(0) probably_damaging(0.989) TCGA-85-A53L-01 11 49175813 49175813 G T FOLH1 Missense_Mutation p.P619T 0.12 tolerated(0.5) benign(0) TCGA-85-A53L-01 11 4944980 4944980 T C OR51G1 Missense_Mutation p.N197S 0.10 tolerated(0.06) probably_damaging(1) TCGA-85-A53L-01 11 55135593 55135593 G A OR4A15 Missense_Mutation p.M78I 0.22 tolerated_low_confidence(1) benign(0) TCGA-85-A53L-01 11 55135594 55135594 G T OR4A15 Missense_Mutation p.A79S 0.23 tolerated_low_confidence(0.3) benign(0.006) TCGA-85-A53L-01 11 88780658 88780658 C T GRM5 Missense_Mutation p.R128H 0.15 tolerated(0.12) probably_damaging(0.937) TCGA-85-A53L-01 12 101510483 101510483 G T ANO4 Missense_Mutation p.S791I 0.12 deleterious(0) probably_damaging(0.994) TCGA-85-A53L-01 12 101745916 101745916 G C UTP20 Missense_Mutation p.L1656F 0.17 deleterious(0) probably_damaging(0.984) TCGA-85-A53L-01 12 104031924 104031924 C T STAB2 Silent p.P280P 0.15 TCGA-85-A53L-01 12 104102221 104102221 T C STAB2 Missense_Mutation p.C1399R 0.22 deleterious(0) probably_damaging(0.999) TCGA-85-A53L-01 12 107109286 107109286 G T RFX4 Missense_Mutation p.D377Y 0.10 deleterious(0.02) benign(0.073) TCGA-85-A53L-01 12 113873251 113873251 G A SDSL Silent p.L187L 0.19 TCGA-85-A53L-01 12 118298158 118298158 C G KSR2 Missense_Mutation p.D87H 0.21 deleterious(0.02) possibly_damaging(0.55) TCGA-85-A53L-01 12 120576554 120576554 G C GCN1L1 Missense_Mutation p.S2034C 0.18 possibly_damaging(0.784) TCGA-85-A53L-01 12 122691619 122691619 C T B3GNT4 Missense_Mutation p.P274L 0.11 tolerated(0.2) benign(0.083) TCGA-85-A53L-01 12 33559945 33559945 G A SYT10 Missense_Mutation p.R286C 0.29 deleterious(0) probably_damaging(0.93) TCGA-85-A53L-01 12 64860821 64860821 G A TBK1 Missense_Mutation p.D167N 0.29 deleterious(0) probably_damaging(0.999) TCGA-85-A53L-01 12 71533573 71533573 A T TSPAN8 Missense_Mutation p.I60N 0.20 deleterious(0) probably_damaging(0.998) TCGA-85-A53L-01 12 81545832 81545832 G C ACSS3 Missense_Mutation p.C352S 0.11 deleterious(0) possibly_damaging(0.486) TCGA-85-A53L-01 12 85547873 85547873 G C LRRIQ1 Splice_Site p.X1574_splice 0.25 TCGA-85-A53L-01 13 24890172 24890172 G C C1QTNF9 Missense_Mutation p.E11Q 0.32 tolerated(0.58) benign(0.001) TCGA-85-A53L-01 13 46701668 46701668 C T LCP1 3'UTR 0.27 TCGA-85-A53L-01 13 77631168 77631168 G C MYCBP2 Missense_Mutation p.L4426V 0.10 probably_damaging(0.987) TCGA-85-A53L-01 13 99091106 99091106 C T FARP1 Nonsense_Mutation p.Q775* 0.26 TCGA-85-A53L-01 14 102901414 102901414 G A TECPR2 Missense_Mutation p.E754K 0.40 deleterious(0) benign(0.371) TCGA-85-A53L-01 14 104640091 104640091 A G KIF26A Missense_Mutation p.E639G 0.33 deleterious(0.02) probably_damaging(0.955) TCGA-85-A53L-01 14 106208416 106208416 C T IGHG1 Missense_Mutation p.V162M 0.39 tolerated(0.05) possibly_damaging(0.648) TCGA-85-A53L-01 14 107218712 107218712 C A IGHV3-74 Silent p.L105L 0.39 TCGA-85-A53L-01 14 22670499 22670499 C G TRAV26-2 Missense_Mutation p.T8S 0.36 tolerated(0.07) possibly_damaging(0.487) TCGA-85-A53L-01 14 52478313 52478317 CCAGC - NID2 Frame_Shift_Del p.A1169Sfs*8 0.20 TCGA-85-A53L-01 14 55819051 55819051 G T FBXO34 Missense_Mutation p.R648L 0.26 deleterious(0) probably_damaging(0.918) TCGA-85-A53L-01 14 60072110 60072110 G T RTN1 Silent p.V696V 0.20 TCGA-85-A53L-01 14 71206735 71206735 A C MAP3K9 Intron 0.33 TCGA-85-A53L-01 15 25423724 25423724 T A SNORD115-6 5'Flank 0.25 TCGA-85-A53L-01 15 33920736 33920736 G C RYR3 Missense_Mutation p.W880S 0.32 probably_damaging(1) TCGA-85-A53L-01 15 33920737 33920737 G T RYR3 Missense_Mutation p.W880C 0.32 probably_damaging(1) TCGA-85-A53L-01 15 35529801 35529801 A G ANP32AP1 RNA 0.36 TCGA-85-A53L-01 15 40751468 40751468 G C BAHD1 Missense_Mutation p.A269P 0.29 tolerated(0.34) benign(0) TCGA-85-A53L-01 15 84527573 84527573 G C ADAMTSL3 Silent p.V261V 0.14 TCGA-85-A53L-01 15 88476391 88476391 C G NTRK3 Missense_Mutation p.A581P 0.39 deleterious(0) probably_damaging(0.99) TCGA-85-A53L-01 15 90321376 90321376 G A MESP2 Silent p.Q335Q 0.40 TCGA-85-A53L-01 16 22144400 22144400 C G VWA3A Missense_Mutation p.H684Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-85-A53L-01 16 4496980 4496980 A G DNAJA3 Missense_Mutation p.R364G 0.09 deleterious(0) possibly_damaging(0.673) TCGA-85-A53L-01 16 48201207 48201207 G T ABCC11 Missense_Mutation p.T1376K 0.16 deleterious(0.01) benign(0.071) TCGA-85-A53L-01 16 53860002 53860002 C T FTO Missense_Mutation p.P117L 0.15 deleterious(0) probably_damaging(1) TCGA-85-A53L-01 16 82033563 82033565 CTT - SDR42E1 In_Frame_Del p.R114del 0.20 TCGA-85-A53L-01 16 88066719 88066719 G A BANP Silent p.P348P 0.16 TCGA-85-A53L-01 17 10322108 10322108 C A MYH8 Missense_Mutation p.G122V 0.25 deleterious(0) probably_damaging(0.994) TCGA-85-A53L-01 17 11543702 11543702 G T DNAH9 Splice_Site p.X634_splice 0.24 TCGA-85-A53L-01 17 11806153 11806153 T A DNAH9 Missense_Mutation p.W3842R 0.26 probably_damaging(0.999) TCGA-85-A53L-01 17 20156875 20156875 G T SPECC1 Missense_Mutation p.D886Y 0.21 deleterious(0.01) benign(0.444) TCGA-85-A53L-01 17 29654839 29654839 G T NF1 Missense_Mutation p.S1864I 0.19 deleterious(0) probably_damaging(0.974) TCGA-85-A53L-01 17 45199848 45199848 G A CDC27 Missense_Mutation p.P791L 0.30 tolerated(0.09) possibly_damaging(0.465) TCGA-85-A53L-01 17 55016463 55016463 G A COIL Missense_Mutation p.P567L 0.38 tolerated(0.11) benign(0.009) TCGA-85-A53L-01 17 72249385 72249385 C A TTYH2 Missense_Mutation p.N475K 0.37 deleterious(0) possibly_damaging(0.643) TCGA-85-A53L-01 17 72588257 72588257 C A C17orf77 Missense_Mutation p.S24R 0.46 tolerated_low_confidence(0.26) benign(0.003) TCGA-85-A53L-01 17 74472963 74472963 C T RHBDF2 Missense_Mutation p.R384H 0.14 deleterious(0.05) benign(0.046) TCGA-85-A53L-01 17 7574035 7574035 T A TP53 Splice_Site p.X332_splice 0.30 TCGA-85-A53L-01 18 70461373 70461373 G A NETO1 Silent p.I206I 0.15 TCGA-85-A53L-01 18 76757273 76757273 G A SALL3 Missense_Mutation p.R1285H 0.11 tolerated(0.29) probably_damaging(0.993) TCGA-85-A53L-01 18 9588200 9588200 G A PPP4R1 Silent p.L158L 0.21 TCGA-85-A53L-01 19 16024446 16024446 A T CYP4F11 3'UTR 0.25 TCGA-85-A53L-01 19 17922559 17922559 G A B3GNT3 Nonsense_Mutation p.W249* 0.14 TCGA-85-A53L-01 19 20828191 20828191 T A ZNF626 Intron 0.19 TCGA-85-A53L-01 19 22155039 22155039 T A ZNF208 Missense_Mutation p.S933C 0.18 tolerated(0.1) unknown(0) TCGA-85-A53L-01 19 30935389 30935389 T A ZNF536 Missense_Mutation p.F307Y 0.19 tolerated(0.27) probably_damaging(0.994) TCGA-85-A53L-01 19 39228220 39228220 G T CAPN12 Missense_Mutation p.P342T 0.40 deleterious(0) probably_damaging(0.995) TCGA-85-A53L-01 19 45016936 45016936 C T CEACAM20 RNA 0.26 TCGA-85-A53L-01 19 45997507 45997507 C G RTN2 Missense_Mutation p.G244A 0.29 deleterious_low_confidence(0.02) benign(0.345) TCGA-85-A53L-01 19 5144798 5144798 G T KDM4B Missense_Mutation p.R969M 0.13 possibly_damaging(0.831) TCGA-85-A53L-01 19 54445654 54445654 G A CACNG7 3'UTR 0.28 TCGA-85-A53L-01 19 7743450 7743450 G T CTD-3214H19.16 Missense_Mutation p.M22I 0.29 tolerated_low_confidence(0.19) benign(0.043) TCGA-85-A53L-01 19 8152741 8152741 T A FBN3 Missense_Mutation p.Y2196F 0.35 tolerated(0.11) probably_damaging(0.955) TCGA-85-A53L-01 1 101704647 101704647 A G S1PR1 Missense_Mutation p.N36S 0.26 tolerated(0.66) benign(0) TCGA-85-A53L-01 1 120510848 120510848 C A NOTCH2 Silent p.L372L 0.20 TCGA-85-A53L-01 1 12919899 12919899 C T PRAMEF2 Silent p.H213H 0.13 TCGA-85-A53L-01 1 151020853 151020853 C T C1orf56 Missense_Mutation p.T177I 0.08 deleterious(0) probably_damaging(0.934) TCGA-85-A53L-01 1 154961164 154961164 A G FLAD1 Missense_Mutation p.N319S 0.14 tolerated(0.17) benign(0.145) TCGA-85-A53L-01 1 156046734 156046734 G C MEX3A Silent p.A398A 0.29 TCGA-85-A53L-01 1 158622302 158622302 T C SPTA1 Silent p.L1110L 0.11 TCGA-85-A53L-01 1 158746816 158746816 C A OR6N2 Missense_Mutation p.A204S 0.50 tolerated(0.83) benign(0.024) TCGA-85-A53L-01 1 159505059 159505059 C G OR10J5 Missense_Mutation p.V247L 0.38 deleterious(0) probably_damaging(0.999) TCGA-85-A53L-01 1 160549191 160549191 G T CD84 Missense_Mutation p.L13M 0.20 tolerated(0.12) benign(0.168) TCGA-85-A53L-01 1 169798521 169798521 G T C1orf112 Missense_Mutation p.L415F 0.29 tolerated(0.2) benign(0.149) TCGA-85-A53L-01 1 171310727 171310727 C G FMO4 Missense_Mutation p.P476A 0.19 deleterious(0) probably_damaging(0.951) TCGA-85-A53L-01 1 186276113 186276113 C G PRG4 Missense_Mutation p.A421G 0.13 unknown(0) TCGA-85-A53L-01 1 196654266 196654266 A G CFH Missense_Mutation p.D288G 0.22 deleterious(0.01) benign(0.246) TCGA-85-A53L-01 1 197024883 197024883 C G F13B Missense_Mutation p.C439S 0.14 deleterious(0) probably_damaging(1) TCGA-85-A53L-01 1 197071763 197071763 T A ASPM Missense_Mutation p.Q2206H 0.25 deleterious(0.02) probably_damaging(0.993) TCGA-85-A53L-01 1 201184784 201184784 C A IGFN1 Missense_Mutation p.A3038D 0.24 possibly_damaging(0.879) TCGA-85-A53L-01 1 201184785 201184785 C A IGFN1 Silent p.A3038A 0.23 TCGA-85-A53L-01 1 207105915 207105915 C G PIGR Missense_Mutation p.E632Q 0.19 tolerated(0.24) possibly_damaging(0.467) TCGA-85-A53L-01 1 207105916 207105916 C A PIGR Missense_Mutation p.E631D 0.20 tolerated(0.6) benign(0.002) TCGA-85-A53L-01 1 207110711 207110711 G A PIGR Silent p.A258A 0.13 TCGA-85-A53L-01 1 207314466 207314466 C G C4BPA Missense_Mutation p.P430R 0.16 deleterious(0.01) probably_damaging(1) TCGA-85-A53L-01 1 228404713 228404713 G T OBSCN Splice_Site p.X793_splice 0.15 TCGA-85-A53L-01 1 237919629 237919629 C A RYR2 Silent p.A3729A 0.15 TCGA-85-A53L-01 1 248004853 248004853 C A OR11L1 Missense_Mutation p.A116S 0.20 tolerated(0.15) benign(0.029) TCGA-85-A53L-01 1 34180308 34180308 A C CSMD2 Missense_Mutation p.F1055L 0.20 deleterious(0.04) benign(0.075) TCGA-85-A53L-01 1 35485150 35485150 C A ZMYM6 Missense_Mutation p.V78L 0.22 tolerated(0.33) benign(0.005) TCGA-85-A53L-01 1 39823132 39823132 A G MACF1 Missense_Mutation p.H1775R 0.23 possibly_damaging(0.681) TCGA-85-A53L-01 1 51001051 51001051 A G FAF1 Missense_Mutation p.I495T 0.22 deleterious(0.01) benign(0.07) TCGA-85-A53L-01 1 7913082 7913082 G A UTS2 Intron 0.10 TCGA-85-A53L-01 1 91845768 91845768 A G HFM1 Missense_Mutation p.V300A 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-85-A53L-01 20 21142722 21142722 A G RP4-777D9.2 Intron 0.27 TCGA-85-A53L-01 20 24950193 24950193 C G APMAP Missense_Mutation p.V273L 0.15 deleterious(0.01) possibly_damaging(0.491) TCGA-85-A53L-01 20 33329046 33329046 C A NCOA6 Nonsense_Mutation p.G1672* 0.27 TCGA-85-A53L-01 20 37182586 37182586 G T RALGAPB Missense_Mutation p.S1080I 0.12 tolerated(0.18) benign(0.299) TCGA-85-A53L-01 20 43257753 43257753 G T ADA Silent p.G51G 0.24 TCGA-85-A53L-01 20 43804642 43804642 G T PI3 Missense_Mutation p.G74C 0.20 deleterious(0) probably_damaging(1) TCGA-85-A53L-01 20 45224873 45224873 G A SLC13A3 Silent p.P239P 0.08 TCGA-85-A53L-01 20 55033687 55033687 C G CASS4 Missense_Mutation p.L749V 0.12 tolerated(0.12) possibly_damaging(0.826) TCGA-85-A53L-01 20 9560800 9560800 T G PAK7 Missense_Mutation p.I328L 0.18 tolerated(0.62) benign(0.001) TCGA-85-A53L-01 21 22881366 22881366 G T NCAM2 Missense_Mutation p.A758S 0.21 deleterious(0) possibly_damaging(0.813) TCGA-85-A53L-01 21 30316057 30316057 A G LTN1 Silent p.N1430N 0.30 TCGA-85-A53L-01 21 31812907 31812907 C A KRTAP15-1 Missense_Mutation p.Q88K 0.17 tolerated(0.05) possibly_damaging(0.824) TCGA-85-A53L-01 22 24718776 24718776 G C SPECC1L Missense_Mutation p.E610Q 0.15 tolerated(0.05) probably_damaging(0.931) TCGA-85-A53L-01 22 50727538 50727538 G T PLXNB2 Missense_Mutation p.H368N 0.26 deleterious(0.02) probably_damaging(0.989) TCGA-85-A53L-01 2 107041124 107041124 A C RGPD3 Missense_Mutation p.M1100R 0.18 deleterious(0) probably_damaging(1) TCGA-85-A53L-01 2 113157327 113157327 T A RGPD8 Missense_Mutation p.Y646F 0.16 tolerated(0.12) benign(0.444) TCGA-85-A53L-01 2 113317032 113317032 G C POLR1B Missense_Mutation p.C498S 0.24 deleterious(0) probably_damaging(1) TCGA-85-A53L-01 2 125530560 125530560 T A CNTNAP5 Missense_Mutation p.H905Q 0.21 deleterious(0) possibly_damaging(0.47) TCGA-85-A53L-01 2 130899759 130899759 G A CCDC74B Missense_Mutation p.A164V 0.11 tolerated(0.18) benign(0.118) TCGA-85-A53L-01 2 132288347 132288347 C T CCDC74A Missense_Mutation p.A164V 0.07 tolerated(0.21) benign(0.222) TCGA-85-A53L-01 2 152409920 152409920 G A NEB Missense_Mutation p.R6575C 0.12 probably_damaging(0.997) TCGA-85-A53L-01 2 166168595 166168595 C A SCN2A Missense_Mutation p.A344E 0.27 deleterious(0) possibly_damaging(0.856) TCGA-85-A53L-01 2 166911147 166911147 C A SCN1A Splice_Site p.X201_splice 0.13 TCGA-85-A53L-01 2 167284443 167284443 C A SCN7A Missense_Mutation p.R903L 0.22 deleterious(0.04) benign(0.373) TCGA-85-A53L-01 2 168103475 168103475 C T XIRP2 Missense_Mutation p.T1858M 0.21 benign(0.143) TCGA-85-A53L-01 2 171259364 171259364 A T MYO3B Silent p.A712A 0.15 TCGA-85-A53L-01 2 179485050 179485050 G C TTN Missense_Mutation p.Q15400E 0.13 TCGA-85-A53L-01 2 197583289 197583289 G T CCDC150 Silent p.A643A 0.12 TCGA-85-A53L-01 2 210560151 210560151 A T MAP2 Missense_Mutation p.Q1086L 0.20 deleterious_low_confidence(0) benign(0.098) TCGA-85-A53L-01 2 242203903 242203903 C T HDLBP Missense_Mutation p.G65E 0.14 tolerated(0.72) benign(0.017) TCGA-85-A53L-01 2 27293152 27293152 C A AGBL5 3'UTR 0.09 TCGA-85-A53L-01 2 37035859 37035859 C A VIT Missense_Mutation p.T545K 0.17 deleterious(0.05) possibly_damaging(0.836) TCGA-85-A53L-01 2 44102488 44102488 T C ABCG8 Silent p.N564N 0.10 TCGA-85-A53L-01 2 54891693 54891693 A C SPTBN1 Missense_Mutation p.K2175T 0.14 tolerated(0.51) benign(0.138) TCGA-85-A53L-01 2 55254581 55254581 C A RTN4 Silent p.S218S 0.18 TCGA-85-A53L-01 2 88887545 88887545 C A EIF2AK3 Nonsense_Mutation p.E462* 0.12 TCGA-85-A53L-01 2 89339836 89339836 C T IGKV1-12 Missense_Mutation p.G79E 0.21 deleterious(0.01) possibly_damaging(0.772) TCGA-85-A53L-01 2 89416963 89416963 G T IGKV1-17 Missense_Mutation p.S74Y 0.12 deleterious(0) benign(0.399) TCGA-85-A53L-01 2 89416964 89416964 A G IGKV1-17 Missense_Mutation p.S74P 0.12 deleterious(0.02) benign(0.2) TCGA-85-A53L-01 2 98428939 98428939 G A TMEM131 Missense_Mutation p.T603I 0.17 tolerated(0.17) benign(0.013) TCGA-85-A53L-01 3 149093235 149093235 C T TM4SF1 Silent p.E136E 0.14 TCGA-85-A53L-01 3 149093237 149093237 C G TM4SF1 Missense_Mutation p.E136Q 0.14 tolerated(0.07) benign(0.34) TCGA-85-A53L-01 3 150916209 150916209 G C GPR171 3'UTR 0.10 TCGA-85-A53L-01 3 155654275 155654275 A T GMPS Silent p.T652T 0.37 TCGA-85-A53L-01 3 157841711 157841711 G T RSRC1 Missense_Mutation p.R84L 0.11 deleterious_low_confidence(0.01) unknown(0) TCGA-85-A53L-01 3 169540584 169540584 T A LRRIQ4 Missense_Mutation p.L292Q 0.28 deleterious(0) probably_damaging(0.998) TCGA-85-A53L-01 3 169814973 169814973 G T PHC3 3'UTR 0.11 TCGA-85-A53L-01 3 173322846 173322846 G T NLGN1 Missense_Mutation p.C153F 0.30 deleterious(0) probably_damaging(0.996) TCGA-85-A53L-01 3 173997194 173997194 C A NLGN1 Missense_Mutation p.P468Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-85-A53L-01 3 173998743 173998743 G T NLGN1 Missense_Mutation p.V708F 0.25 tolerated(0.42) probably_damaging(0.991) TCGA-85-A53L-01 3 20189778 20189778 A G KAT2B Missense_Mutation p.S734G 0.34 tolerated(0.14) benign(0.008) TCGA-85-A53L-01 3 27161327 27161327 G C NEK10 Silent p.P1095P 0.35 TCGA-85-A53L-01 3 38991662 38991662 C A SCN11A Missense_Mutation p.K64N 0.29 tolerated(0.6) benign(0.014) TCGA-85-A53L-01 3 52005624 52005624 G C ABHD14B Missense_Mutation p.F21L 0.27 deleterious(0.01) benign(0.208) TCGA-85-A53L-01 4 114824248 114824248 T G ARSJ Missense_Mutation p.N328H 0.32 deleterious(0) probably_damaging(1) TCGA-85-A53L-01 4 130030509 130030509 G T C4orf33 Missense_Mutation p.W97L 0.30 tolerated(0.16) probably_damaging(0.943) TCGA-85-A53L-01 4 144354699 144354699 T A GAB1 Silent p.A141A 0.26 TCGA-85-A53L-01 4 3227427 3227427 A G HTT Missense_Mutation p.N2602S 0.29 benign(0.354) TCGA-85-A53L-01 4 39409248 39409248 C G KLB Missense_Mutation p.Q227E 0.20 tolerated(0.07) benign(0.05) TCGA-85-A53L-01 4 47322160 47322160 G T GABRB1 Missense_Mutation p.A160S 0.19 tolerated(0.11) probably_damaging(0.922) TCGA-85-A53L-01 4 73957007 73957007 C A ANKRD17 Missense_Mutation p.G2113V 0.11 benign(0.003) TCGA-85-A53L-01 5 10254316 10254316 T C CCT5 Silent p.N55N 0.17 TCGA-85-A53L-01 5 11098777 11098777 G T CTNND2 Silent p.P849P 0.21 TCGA-85-A53L-01 5 121780297 121780297 C A SNCAIP Missense_Mutation p.H488N 0.08 tolerated(0.23) benign(0.02) TCGA-85-A53L-01 5 140719165 140719165 C A PCDHGA2 Missense_Mutation p.H209Q 0.15 tolerated_low_confidence(0.14) benign(0.219) TCGA-85-A53L-01 5 140731378 140731378 C T PCDHGB1 Silent p.D517D 0.24 TCGA-85-A53L-01 5 140731381 140731381 C T PCDHGB1 Silent p.H518H 0.27 TCGA-85-A53L-01 5 140784374 140784374 G T PCDHGA9 Missense_Mutation p.V619L 0.33 tolerated_low_confidence(0.09) possibly_damaging(0.603) TCGA-85-A53L-01 5 140810578 140810578 G A PCDHGA12 Silent p.L84L 0.27 TCGA-85-A53L-01 5 143586816 143586816 G C KCTD16 Missense_Mutation p.G180A 0.16 tolerated(0.24) benign(0.009) TCGA-85-A53L-01 5 149504356 149504356 C G PDGFRB Missense_Mutation p.E616Q 0.20 deleterious(0.01) probably_damaging(1) TCGA-85-A53L-01 5 24487847 24487847 G T CDH10 Nonsense_Mutation p.Y764* 0.19 TCGA-85-A53L-01 5 31297451 31297451 C T CDH6 Silent p.N193N 0.17 TCGA-85-A53L-01 5 6739858 6739858 G T PAPD7 Missense_Mutation p.V51L 0.27 deleterious(0.05) possibly_damaging(0.859) TCGA-85-A53L-01 5 89814659 89814659 G A LYSMD3 Missense_Mutation p.P300S 0.06 tolerated_low_confidence(0.1) benign(0.073) TCGA-85-A53L-01 5 89938529 89938529 G C GPR98 Missense_Mutation p.G773R 0.07 probably_damaging(0.979) TCGA-85-A53L-01 6 10894330 10894330 A G SYCP2L Missense_Mutation p.N77D 0.17 deleterious(0.02) possibly_damaging(0.635) TCGA-85-A53L-01 6 110146354 110146354 A G FIG4 Silent p.R870R 0.19 TCGA-85-A53L-01 6 116938260 116938260 C A RSPH4A Silent p.P158P 0.22 TCGA-85-A53L-01 6 121433750 121433750 C A TBC1D32 Missense_Mutation p.M1075I 0.33 tolerated(0.1) benign(0.001) TCGA-85-A53L-01 6 123892213 123892213 T A TRDN Silent p.G29G 0.20 TCGA-85-A53L-01 6 135778773 135778773 C A AHI1 Missense_Mutation p.C337F 0.16 tolerated(0.74) benign(0.153) TCGA-85-A53L-01 6 138607923 138607923 G A KIAA1244 Silent p.A885A 0.17 TCGA-85-A53L-01 6 152774749 152774749 G C SYNE1 Missense_Mutation p.A1000G 0.18 possibly_damaging(0.762) TCGA-85-A53L-01 6 18122675 18122675 C T NHLRC1 Missense_Mutation p.V55M 0.20 deleterious(0) probably_damaging(0.997) TCGA-85-A53L-01 6 20144534 20144534 A - MBOAT1 Frame_Shift_Del p.F112Lfs*2 0.13 TCGA-85-A53L-01 6 31749279 31749279 C G VARS Silent p.T841T 0.17 TCGA-85-A53L-01 6 33663492 33663492 A T ITPR3 Missense_Mutation p.T2651S 0.15 tolerated(0.08) possibly_damaging(0.739) TCGA-85-A53L-01 6 7889021 7889021 G C TXNDC5 Missense_Mutation p.L294V 0.24 tolerated(0.1) benign(0.082) TCGA-85-A53L-01 6 80197299 80197299 G T LCA5 Missense_Mutation p.P506T 0.12 tolerated(0.22) benign(0.119) TCGA-85-A53L-01 6 96651600 96651600 G A FUT9 Missense_Mutation p.C190Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-85-A53L-01 6 97562248 97562248 G C KLHL32 Missense_Mutation p.R406T 0.11 deleterious(0) probably_damaging(0.997) TCGA-85-A53L-01 7 102119320 102119320 G A POLR2J 5'UTR 0.12 TCGA-85-A53L-01 7 123267198 123267198 G A ASB15 Silent p.A244A 0.18 TCGA-85-A53L-01 7 148963770 148963770 G T ZNF783 Missense_Mutation p.R123S 0.26 deleterious(0) benign(0.096) TCGA-85-A53L-01 7 27185241 27185241 G T HOXA6 3'UTR 0.19 TCGA-85-A53L-01 7 2969647 2969647 G - CARD11 Frame_Shift_Del p.T545Pfs*55 0.19 TCGA-85-A53L-01 7 37953866 37953866 T A SFRP4 Nonsense_Mutation p.K181* 0.29 TCGA-85-A53L-01 7 38393322 38393322 C A TRGV4 Missense_Mutation p.W116C 0.38 deleterious(0) probably_damaging(1) TCGA-85-A53L-01 7 4014161 4014161 G T SDK1 Missense_Mutation p.A660S 0.35 deleterious(0) probably_damaging(0.98) TCGA-85-A53L-01 7 82785173 82785173 T A PCLO Missense_Mutation p.T262S 0.35 unknown(0) TCGA-85-A53L-01 7 87536562 87536562 A T DBF4 Missense_Mutation p.E370V 0.16 deleterious(0) possibly_damaging(0.448) TCGA-85-A53L-01 7 88956757 88956757 C G ZNF804B Missense_Mutation p.Q117E 0.33 tolerated(0.06) benign(0.042) TCGA-85-A53L-01 8 113256674 113256675 TA - CSMD3 Frame_Shift_Del p.H3450Qfs*4 0.14 TCGA-85-A53L-01 8 143624769 143624769 G T BAI1 Silent p.R1473R 0.18 TCGA-85-A53L-01 8 22102949 22102949 C T POLR3D 5'UTR 0.50 TCGA-85-A53L-01 8 52384808 52384808 C T PXDNL Missense_Mutation p.V251I 0.19 deleterious(0.04) possibly_damaging(0.868) TCGA-85-A53L-01 8 62212483 62212483 G T CLVS1 Nonsense_Mutation p.E33* 0.15 TCGA-85-A53L-01 8 67372547 67372547 C T ADHFE1 Silent p.A389A 0.19 TCGA-85-A53L-01 8 68340328 68340328 T G CPA6 Silent p.S360S 0.16 TCGA-85-A53L-01 8 68423877 68423877 C A CPA6 Missense_Mutation p.D111Y 0.24 deleterious(0) probably_damaging(0.987) TCGA-85-A53L-01 8 71069040 71069040 G A NCOA2 Silent p.C520C 0.22 TCGA-85-A53L-01 8 76471039 76471039 C A HNF4G Missense_Mutation p.A287E 0.12 deleterious(0) probably_damaging(0.977) TCGA-85-A53L-01 8 77764357 77764357 C A ZFHX4 Missense_Mutation p.Q1734K 0.25 benign(0.092) TCGA-85-A53L-01 8 88885686 88885686 G T DCAF4L2 Missense_Mutation p.R172S 0.24 tolerated(0.37) benign(0) TCGA-85-A53L-01 8 92330581 92330581 T C SLC26A7 Silent p.Y205Y 0.19 TCGA-85-A53L-01 8 9437788 9437788 G T TNKS Missense_Mutation p.V265L 0.17 deleterious(0.02) probably_damaging(0.933) TCGA-85-A53L-01 9 107298875 107298875 C A OR13C3 Missense_Mutation p.V74F 0.12 tolerated(0.07) benign(0.426) TCGA-85-A53L-01 9 107593232 107593232 C A ABCA1 Missense_Mutation p.M622I 0.14 deleterious(0.03) benign(0.064) TCGA-85-A53L-01 9 135144819 135144819 C A SETX Intron 0.21 TCGA-85-A53L-01 9 139907036 139907036 C A ABCA2 Silent p.G1696G 0.33 TCGA-85-A53L-01 9 4576701 4576701 A T SLC1A1 Silent p.A377A 0.28 TCGA-85-A53L-01 X 117043289 117043289 A G KLHL13 Silent p.G450G 0.38 TCGA-85-A53L-01 X 130411029 130411029 G C IGSF1 Missense_Mutation p.A836G 0.33 tolerated(0.3) benign(0.096) TCGA-85-A53L-01 X 27839541 27839541 C A MAGEB10 Missense_Mutation p.P40T 0.30 tolerated(0.18) benign(0.05) TCGA-85-A53L-01 X 49021214 49021214 A C MAGIX Missense_Mutation p.E98A 0.25 tolerated(0.14) benign(0.437) TCGA-85-A53L-01 X 53247578 53247578 G C KDM5C Silent p.A77A 0.31 TCGA-85-A53L-01 X 70387570 70387570 T C NLGN3 Silent p.L541L 0.36 TCGA-85-A53L-01 X 89177604 89177604 G A TGIF2LX Missense_Mutation p.D174N 0.30 tolerated(0.14) benign(0.176) TCGA-85-A5B5-01 10 101151320 101151320 G T CNNM1 3'UTR 0.80 TCGA-85-A5B5-01 10 105194089 105194089 T C PDCD11 Silent p.L1217L 0.35 TCGA-85-A5B5-01 10 111881893 111881893 G T ADD3 Missense_Mutation p.G329V 0.62 deleterious(0) possibly_damaging(0.806) TCGA-85-A5B5-01 10 25887381 25887381 C G GPR158 Missense_Mutation p.N942K 0.46 tolerated(0.41) benign(0.007) TCGA-85-A5B5-01 10 26581431 26581431 T C GAD2 Missense_Mutation p.L475S 0.51 deleterious(0) probably_damaging(0.999) TCGA-85-A5B5-01 10 37490228 37490228 G A ANKRD30A Missense_Mutation p.M892I 0.81 tolerated(1) benign(0) TCGA-85-A5B5-01 10 43623844 43623845 - T RET 3'UTR 0.47 TCGA-85-A5B5-01 10 43692538 43692538 C A RASGEF1A Nonsense_Mutation p.E412* 0.65 TCGA-85-A5B5-01 10 55587307 55587307 G T PCDH15 Missense_Mutation p.R1405S 0.61 deleterious(0) probably_damaging(0.999) TCGA-85-A5B5-01 10 61834890 61834890 C A ANK3 Missense_Mutation p.A1917S 0.79 probably_damaging(0.982) TCGA-85-A5B5-01 10 64382893 64382893 G T ZNF365 Missense_Mutation p.G338W 0.69 deleterious_low_confidence(0) possibly_damaging(0.532) TCGA-85-A5B5-01 10 70136640 70136640 T A RUFY2 Missense_Mutation p.Q467L 0.32 deleterious(0.01) probably_damaging(0.986) TCGA-85-A5B5-01 10 73544168 73544168 C A CDH23 Silent p.L1836L 0.56 TCGA-85-A5B5-01 10 7679196 7679196 C A ITIH5 Missense_Mutation p.G216V 0.27 tolerated(0.25) benign(0.008) TCGA-85-A5B5-01 10 81702144 81702144 C G SFTPD Missense_Mutation p.G145R 0.15 deleterious(0.01) probably_damaging(0.931) TCGA-85-A5B5-01 10 81702242 81702242 C G SFTPD Missense_Mutation p.G112A 0.35 tolerated(0.07) probably_damaging(0.91) TCGA-85-A5B5-01 10 91152436 91152436 A C IFIT1 5'UTR 0.66 TCGA-85-A5B5-01 10 94836894 94836894 G T CYP26A1 Missense_Mutation p.V443L 0.64 tolerated(0.96) benign(0.338) TCGA-85-A5B5-01 11 10500163 10500163 G T AMPD3 Silent p.P113P 0.42 TCGA-85-A5B5-01 11 11374189 11374189 G - CSNK2A3 Frame_Shift_Del p.H160Ifs*4 0.24 TCGA-85-A5B5-01 11 113846103 113846103 C T HTR3A Missense_Mutation p.A25V 0.32 tolerated(0.36) unknown(0) TCGA-85-A5B5-01 11 116692347 116692347 G C APOA4 Missense_Mutation p.R143G 0.50 deleterious(0.01) possibly_damaging(0.702) TCGA-85-A5B5-01 11 117310620 117310620 C A DSCAML1 Missense_Mutation p.V1359L 0.40 tolerated(0.17) probably_damaging(0.973) TCGA-85-A5B5-01 11 118498569 118498569 C T PHLDB1 Missense_Mutation p.R344W 0.34 tolerated(0.08) benign(0.393) TCGA-85-A5B5-01 11 118984642 118984642 G T C2CD2L Missense_Mutation p.V524L 0.38 tolerated(0.44) benign(0.023) TCGA-85-A5B5-01 11 122828114 122828114 A T C11orf63 Missense_Mutation p.K685M 0.48 deleterious(0) probably_damaging(0.979) TCGA-85-A5B5-01 11 123893789 123893789 C A OR10G9 Missense_Mutation p.P24T 0.29 tolerated(0.55) benign(0) TCGA-85-A5B5-01 11 124482916 124482916 C G PANX3 Missense_Mutation p.I74M 0.31 tolerated(0.19) benign(0.267) TCGA-85-A5B5-01 11 1271237 1271237 C G MUC5B Missense_Mutation p.T4376S 0.34 benign(0.007) TCGA-85-A5B5-01 11 1271238 1271238 C A MUC5B Silent p.T4376T 0.34 TCGA-85-A5B5-01 11 17793935 17793935 G T KCNC1 Missense_Mutation p.V432L 0.39 deleterious(0) probably_damaging(0.967) TCGA-85-A5B5-01 11 30033243 30033243 G C KCNA4 Missense_Mutation p.T328S 0.43 deleterious(0) possibly_damaging(0.75) TCGA-85-A5B5-01 11 30953346 30953346 G T DCDC1 Missense_Mutation p.P957T 0.42 deleterious(0.02) benign(0.188) TCGA-85-A5B5-01 11 45671558 45671558 C A CHST1 Missense_Mutation p.A306S 0.40 deleterious(0.03) possibly_damaging(0.71) TCGA-85-A5B5-01 11 49214409 49214409 C - FOLH1 Frame_Shift_Del p.G150Dfs*25 0.27 TCGA-85-A5B5-01 11 5068056 5068056 G T OR52J3 Missense_Mutation p.A101S 0.43 tolerated(0.19) benign(0.371) TCGA-85-A5B5-01 11 5173176 5173176 G C OR52A1 Missense_Mutation p.L142V 0.38 tolerated(1) benign(0.044) TCGA-85-A5B5-01 11 5291117 5291117 C A HBE1 Missense_Mutation p.V2L 0.50 deleterious(0) benign(0.095) TCGA-85-A5B5-01 11 5364456 5364456 T A OR51B5 Missense_Mutation p.Y100F 0.31 tolerated(0.84) benign(0.047) TCGA-85-A5B5-01 11 5444022 5444022 A T OR51Q1 Missense_Mutation p.S198C 0.37 deleterious(0.02) probably_damaging(0.948) TCGA-85-A5B5-01 11 55322384 55322384 C G OR4C15 Missense_Mutation p.A201G 0.45 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-85-A5B5-01 11 55322524 55322524 T A OR4C15 Missense_Mutation p.F248I 0.31 tolerated_low_confidence(0.23) benign(0.16) TCGA-85-A5B5-01 11 55659174 55659174 T A TRIM51 3'UTR 0.38 TCGA-85-A5B5-01 11 55681462 55681462 T A OR5W2 Missense_Mutation p.L199F 0.33 deleterious(0) benign(0.215) TCGA-85-A5B5-01 11 56058493 56058493 C G OR8H1 Missense_Mutation p.G16R 0.36 deleterious(0.01) probably_damaging(1) TCGA-85-A5B5-01 11 57463421 57463421 C T ZDHHC5 Silent p.S305S 0.30 TCGA-85-A5B5-01 11 57996292 57996292 C A OR10Q1 Missense_Mutation p.R19L 0.40 tolerated(1) benign(0.022) TCGA-85-A5B5-01 11 58170282 58170283 - A OR5B3 Frame_Shift_Ins p.V201Cfs*89 0.32 TCGA-85-A5B5-01 11 58722313 58722313 A T GLYATL1 Missense_Mutation p.E117V 0.57 deleterious(0) benign(0.056) TCGA-85-A5B5-01 11 6477699 6477699 C G TRIM3 Silent p.L419L 0.50 TCGA-85-A5B5-01 11 65268407 65268407 C A MALAT1 RNA 0.31 TCGA-85-A5B5-01 11 6655150 6655150 G T DCHS1 Silent p.A696A 0.43 TCGA-85-A5B5-01 11 68154042 68154042 G T LRP5 Missense_Mutation p.W425L 0.34 deleterious(0) probably_damaging(0.98) TCGA-85-A5B5-01 11 686971 686971 C A DEAF1 Missense_Mutation p.G231W 0.33 deleterious(0) probably_damaging(0.978) TCGA-85-A5B5-01 11 6942416 6942416 A G OR2D3 Missense_Mutation p.I62V 0.40 tolerated(0.21) benign(0.011) TCGA-85-A5B5-01 11 86160961 86160961 C A ME3 Missense_Mutation p.W367C 0.36 deleterious(0) probably_damaging(0.979) TCGA-85-A5B5-01 11 89891379 89891379 G C NAALAD2 Missense_Mutation p.G288A 0.35 deleterious(0) probably_damaging(0.952) TCGA-85-A5B5-01 11 93468487 93468488 CC A KIAA1731 3'Flank 0.30 TCGA-85-A5B5-01 11 94354293 94354293 A G PIWIL4 3'UTR 0.31 TCGA-85-A5B5-01 12 120760101 120760101 C T PLA2G1B Silent p.E114E 0.44 TCGA-85-A5B5-01 12 125609570 125609570 G T AACS Nonsense_Mutation p.G437* 0.39 TCGA-85-A5B5-01 12 125612718 125612718 A G AACS Missense_Mutation p.I441V 0.24 deleterious(0.01) probably_damaging(0.939) TCGA-85-A5B5-01 12 130856228 130856228 T C PIWIL1 3'UTR 0.38 TCGA-85-A5B5-01 12 16135282 16135282 G T DERA Silent p.G183G 0.41 TCGA-85-A5B5-01 12 20522884 20522884 G T PDE3A Missense_Mutation p.R222S 0.35 tolerated(0.16) probably_damaging(0.997) TCGA-85-A5B5-01 12 32135679 32135679 C A KIAA1551 Missense_Mutation p.T597K 0.38 tolerated(1) benign(0.002) TCGA-85-A5B5-01 12 39745590 39745590 C - KIF21A Frame_Shift_Del p.K555Rfs*45 0.16 TCGA-85-A5B5-01 12 40687424 40687424 C G LRRK2 Missense_Mutation p.Q923E 0.27 tolerated(0.12) benign(0.218) TCGA-85-A5B5-01 12 43822265 43822265 C T ADAMTS20 Missense_Mutation p.D1242N 0.23 tolerated(0.33) benign(0.065) TCGA-85-A5B5-01 12 45004659 45004659 G T NELL2 Silent p.G563G 0.21 TCGA-85-A5B5-01 12 52627338 52627338 G A KRT7 Silent p.R86R 0.51 TCGA-85-A5B5-01 12 52788846 52788846 C A KRT82 Missense_Mutation p.E485D 0.34 tolerated(0.43) benign(0.257) TCGA-85-A5B5-01 12 52984648 52984648 C G KRT72 Missense_Mutation p.R354P 0.45 deleterious(0) probably_damaging(0.924) TCGA-85-A5B5-01 12 53200939 53200939 C G KRT4 Missense_Mutation p.G493R 0.27 deleterious_low_confidence(0.05) unknown(0) TCGA-85-A5B5-01 12 56494849 56494849 C T ERBB3 Missense_Mutation p.S1069F 0.18 tolerated(0.7) benign(0.054) TCGA-85-A5B5-01 12 56572235 56572235 G A SMARCC2 Silent p.T421T 0.58 TCGA-85-A5B5-01 12 57859571 57859571 G T GLI1 Missense_Mutation p.D209Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-85-A5B5-01 12 64061838 64061838 G C DPY19L2 Missense_Mutation p.I112M 0.21 deleterious(0.01) benign(0.071) TCGA-85-A5B5-01 12 70918316 70918316 A G PTPRB Missense_Mutation p.L2187P 0.29 deleterious(0) probably_damaging(0.988) TCGA-85-A5B5-01 12 71286692 71286692 A T PTPRR Missense_Mutation p.F42I 0.28 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-85-A5B5-01 12 7843019 7843019 G A GDF3 Silent p.L184L 0.34 TCGA-85-A5B5-01 12 7864125 7864125 T C DPPA3 5'UTR 0.42 TCGA-85-A5B5-01 12 8083161 8083161 G T SLC2A3 Silent p.I196I 0.28 TCGA-85-A5B5-01 12 86373089 86373089 C G MGAT4C Missense_Mutation p.S472T 0.28 tolerated(0.24) benign(0.033) TCGA-85-A5B5-01 12 94763800 94763800 T A CCDC41 Nonsense_Mutation p.K316* 0.29 TCGA-85-A5B5-01 13 111111180 111111180 C A COL4A2 Missense_Mutation p.P499T 0.36 possibly_damaging(0.864) TCGA-85-A5B5-01 13 25823393 25823393 C G MTMR6 Missense_Mutation p.G615R 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-85-A5B5-01 13 26104778 26104778 A G ATP8A2 Missense_Mutation p.K134E 0.41 deleterious(0) probably_damaging(0.977) TCGA-85-A5B5-01 13 31821999 31821999 G A B3GALTL Missense_Mutation p.V119I 0.27 tolerated(0.22) benign(0.009) TCGA-85-A5B5-01 13 32802676 32802676 A G FRY Missense_Mutation p.S1764G 0.36 deleterious(0.01) possibly_damaging(0.776) TCGA-85-A5B5-01 13 32863867 32863867 G T FRY Missense_Mutation p.S2856I 0.33 tolerated(0.14) benign(0.434) TCGA-85-A5B5-01 13 33250091 33250091 G T PDS5B Missense_Mutation p.L319F 0.26 tolerated(0.05) probably_damaging(0.993) TCGA-85-A5B5-01 13 46933745 46933745 G C KIAA0226L Missense_Mutation p.R381G 0.27 tolerated(0.44) benign(0.004) TCGA-85-A5B5-01 13 53420286 53420286 C A PCDH8 Silent p.L762L 0.45 TCGA-85-A5B5-01 13 53616100 53616100 C T OLFM4 Missense_Mutation p.T138I 0.35 deleterious(0.03) probably_damaging(0.984) TCGA-85-A5B5-01 13 66878681 66878681 C A PCDH9 3'UTR 0.17 TCGA-85-A5B5-01 13 66879093 66879093 C G PCDH9 Missense_Mutation p.L1136F 0.37 tolerated(0.7) probably_damaging(0.926) TCGA-85-A5B5-01 13 70370993 70370993 C A KLHL1 Missense_Mutation p.D506Y 0.33 deleterious(0) probably_damaging(0.97) TCGA-85-A5B5-01 14 105071012 105071012 C T TMEM179 Missense_Mutation p.V23M 0.28 tolerated(0.13) benign(0.075) TCGA-85-A5B5-01 14 105419083 105419083 G C AHNAK2 Missense_Mutation p.P902R 0.12 probably_damaging(0.997) TCGA-85-A5B5-01 14 106471496 106471496 C G IGHV1-3 Missense_Mutation p.G34A 0.17 deleterious(0.01) probably_damaging(0.972) TCGA-85-A5B5-01 14 19378019 19378019 C A OR11H12 Nonsense_Mutation p.C142* 0.09 TCGA-85-A5B5-01 14 20692435 20692435 C A OR11H6 Silent p.P189P 0.53 TCGA-85-A5B5-01 14 21870577 21870578 - TC CHD8 Frame_Shift_Ins p.M1267Rfs*20 0.09 TCGA-85-A5B5-01 14 22204462 22204462 A G TRAV4 5'UTR 0.46 TCGA-85-A5B5-01 14 22447315 22447315 C A TRAV8-6 Nonsense_Mutation p.S99* 0.57 TCGA-85-A5B5-01 14 23530358 23530358 C G ACIN1 Missense_Mutation p.D1212H 0.47 probably_damaging(0.997) TCGA-85-A5B5-01 14 55817867 55817867 T C FBXO34 Silent p.S253S 0.19 TCGA-85-A5B5-01 14 64675568 64675568 A G SYNE2 Silent p.A6098A 0.18 TCGA-85-A5B5-01 14 73422319 73422319 C T DCAF4 Missense_Mutation p.T365I 0.20 tolerated(0.26) benign(0.034) TCGA-85-A5B5-01 14 92499582 92499582 G A TRIP11 Missense_Mutation p.S52F 0.39 deleterious(0.03) benign(0.069) TCGA-85-A5B5-01 14 94908955 94908955 T A SERPINA11 Silent p.P419P 0.41 TCGA-85-A5B5-01 14 95030077 95030077 C A SERPINA4 Nonsense_Mutation p.Y86* 0.53 TCGA-85-A5B5-01 15 22332697 22332697 G T RP11-69H14.6 RNA 0.32 TCGA-85-A5B5-01 15 22332698 22332698 G T RP11-69H14.6 RNA 0.33 TCGA-85-A5B5-01 15 22332763 22332763 A G RP11-69H14.6 RNA 0.22 TCGA-85-A5B5-01 15 22368631 22368631 A T OR4M2 Missense_Mutation p.Q19L 0.21 deleterious(0.02) benign(0.154) TCGA-85-A5B5-01 15 24921631 24921631 G C NPAP1 Missense_Mutation p.G206A 0.40 tolerated(0.6) benign(0.228) TCGA-85-A5B5-01 15 25326263 25326263 C A SNORD116-12 3'Flank 0.15 TCGA-85-A5B5-01 15 25417671 25417671 C T SNORD115-3 5'Flank 0.30 TCGA-85-A5B5-01 15 25456808 25456808 C T SNORD115-22 3'Flank 0.28 TCGA-85-A5B5-01 15 50339642 50339642 G T ATP8B4 Nonsense_Mutation p.S36* 0.85 TCGA-85-A5B5-01 15 53081392 53081392 C A ONECUT1 Silent p.G230G 0.85 TCGA-85-A5B5-01 15 63053960 63053960 C A TLN2 Missense_Mutation p.N1573K 0.80 deleterious(0.03) benign(0.433) TCGA-85-A5B5-01 15 65490431 65490434 CACC ACA CILP Frame_Shift_Del p.G732Afs*25 0.31 TCGA-85-A5B5-01 15 67938757 67938757 G A MAP2K5 Missense_Mutation p.G229E 0.72 deleterious(0) probably_damaging(0.995) TCGA-85-A5B5-01 15 79058517 79058517 C A ADAMTS7 Missense_Mutation p.V1246F 0.80 tolerated(0.41) benign(0.003) TCGA-85-A5B5-01 16 14988879 14988879 G A NOMO1 Missense_Mutation p.A1157T 0.23 tolerated(1) benign(0.005) TCGA-85-A5B5-01 16 24104165 24104165 T C PRKCB Missense_Mutation p.Y195H 0.26 deleterious(0.03) possibly_damaging(0.66) TCGA-85-A5B5-01 16 27495639 27495639 C A GTF3C1 Silent p.R1298R 0.40 TCGA-85-A5B5-01 16 28515047 28515047 G A IL27 Missense_Mutation p.S91F 0.19 deleterious(0) probably_damaging(0.997) TCGA-85-A5B5-01 16 32264855 32264855 T C TP53TG3D Missense_Mutation p.C61R 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.588) TCGA-85-A5B5-01 16 3724387 3724387 T A TRAP1 Missense_Mutation p.T333S 0.17 deleterious(0.03) possibly_damaging(0.734) TCGA-85-A5B5-01 16 50711381 50711381 G T SNX20 Nonsense_Mutation p.C19* 0.21 TCGA-85-A5B5-01 16 55516897 55516897 T C MMP2 Missense_Mutation p.M77T 0.43 deleterious(0) probably_damaging(1) TCGA-85-A5B5-01 16 57732892 57732892 C G CCDC135 Missense_Mutation p.R112G 0.41 deleterious(0) probably_damaging(1) TCGA-85-A5B5-01 16 57765166 57765166 C A CCDC135 Missense_Mutation p.A874D 0.15 deleterious_low_confidence(0.02) benign(0.208) TCGA-85-A5B5-01 16 61689586 61689586 T A CDH8 Missense_Mutation p.N565I 0.30 deleterious(0.04) benign(0.31) TCGA-85-A5B5-01 16 69419541 69419541 C A TERF2 Missense_Mutation p.G70C 0.50 deleterious(0.01) probably_damaging(0.941) TCGA-85-A5B5-01 16 75651150 75651150 T A ADAT1 Missense_Mutation p.Q105L 0.35 tolerated(0.67) benign(0.124) TCGA-85-A5B5-01 16 77401619 77401619 G T ADAMTS18 Nonsense_Mutation p.S166* 0.37 TCGA-85-A5B5-01 16 81193230 81193230 T C PKD1L2 Intron 0.54 TCGA-85-A5B5-01 16 88017865 88017865 G T BANP Missense_Mutation p.C113F 0.33 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-85-A5B5-01 16 89345508 89345508 T C ANKRD11 Missense_Mutation p.K2481R 0.15 possibly_damaging(0.61) TCGA-85-A5B5-01 17 1649200 1649200 C G SERPINF2 Missense_Mutation p.L122V 0.67 deleterious(0.01) possibly_damaging(0.843) TCGA-85-A5B5-01 17 37186587 37186587 G A CTD-2206N4.2 5'Flank 0.45 TCGA-85-A5B5-01 17 4647999 4647999 G T ZMYND15 Missense_Mutation p.R588L 0.45 deleterious(0.02) possibly_damaging(0.755) TCGA-85-A5B5-01 17 46655511 46655511 G C HOXB4 Silent p.R57R 0.88 TCGA-85-A5B5-01 17 4995531 4995531 G T ZFP3 Missense_Mutation p.Q244H 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-85-A5B5-01 17 73753604 73753604 A T ITGB4 Missense_Mutation p.T1813S 0.49 tolerated(0.21) benign(0.002) TCGA-85-A5B5-01 17 74134037 74134037 G T FOXJ1 Missense_Mutation p.H221Q 0.36 tolerated(0.07) probably_damaging(0.996) TCGA-85-A5B5-01 17 75398643 75398643 C G SEPT9 Silent p.P193P 0.34 TCGA-85-A5B5-01 17 7578526 7578526 C T TP53 Missense_Mutation p.C135Y 0.85 deleterious(0) probably_damaging(1) TCGA-85-A5B5-01 18 14478860 14478860 C A CXADRP3 RNA 0.11 TCGA-85-A5B5-01 18 31323193 31323193 C A ASXL3 Silent p.T1127T 0.25 TCGA-85-A5B5-01 18 3879558 3879558 C G DLGAP1 Missense_Mutation p.D171H 0.18 tolerated(0.52) possibly_damaging(0.681) TCGA-85-A5B5-01 18 40850558 40850558 C A SYT4 Missense_Mutation p.K342N 0.60 deleterious(0) probably_damaging(0.999) TCGA-85-A5B5-01 18 43314300 43314300 G A SLC14A1 Missense_Mutation p.V191I 0.62 deleterious(0.03) benign(0.315) TCGA-85-A5B5-01 18 6966169 6966169 G C LAMA1 Missense_Mutation p.L2343V 0.32 tolerated(0.09) possibly_damaging(0.533) TCGA-85-A5B5-01 18 6999556 6999556 G T LAMA1 Silent p.V1517V 0.36 TCGA-85-A5B5-01 18 7117685 7117685 C A LAMA1 Missense_Mutation p.C12F 0.47 tolerated(0.52) possibly_damaging(0.831) TCGA-85-A5B5-01 19 14001145 14001145 C A C19orf57 Missense_Mutation p.S175I 0.17 deleterious(0.02) possibly_damaging(0.883) TCGA-85-A5B5-01 19 1438379 1438379 C T RPS15 5'Flank 0.18 TCGA-85-A5B5-01 19 17743937 17743937 T G UNC13A Missense_Mutation p.D1094A 0.18 deleterious(0) possibly_damaging(0.755) TCGA-85-A5B5-01 19 19431806 19431806 G A MAU2 Silent p.L46L 0.22 TCGA-85-A5B5-01 19 22155656 22155656 C - ZNF208 Frame_Shift_Del p.G727Afs*15 0.15 TCGA-85-A5B5-01 19 22157061 22157061 A G ZNF208 Missense_Mutation p.C259R 0.24 deleterious(0) probably_damaging(0.986) TCGA-85-A5B5-01 19 22939901 22939902 AG C ZNF99 3'Flank 0.13 TCGA-85-A5B5-01 19 2351562 2351562 G T LLfos-48D6.1 3'Flank 0.20 TCGA-85-A5B5-01 19 23542445 23542445 G T ZNF91 Silent p.G1112G 0.20 TCGA-85-A5B5-01 19 37117283 37117283 G C ZNF382 Missense_Mutation p.G162R 0.20 tolerated(0.07) benign(0.351) TCGA-85-A5B5-01 19 40366052 40366052 C A FCGBP Nonsense_Mutation p.E4728* 0.25 TCGA-85-A5B5-01 19 43243006 43243006 T G PSG3 Silent p.T100T 0.22 TCGA-85-A5B5-01 19 44740441 44740441 C T ZNF227 Missense_Mutation p.R620W 0.08 deleterious(0.04) probably_damaging(0.998) TCGA-85-A5B5-01 19 463864 463864 G A ODF3L2 Silent p.L284L 0.64 TCGA-85-A5B5-01 19 46997589 46997589 G C PNMAL2 Silent p.V378V 0.47 TCGA-85-A5B5-01 19 52520238 52520238 G - ZNF614 Frame_Shift_Del p.H205Mfs*46 0.26 TCGA-85-A5B5-01 19 53311368 53311368 C A ZNF28 Missense_Mutation p.D12Y 0.43 deleterious(0) probably_damaging(0.999) TCGA-85-A5B5-01 19 54313113 54313113 C A NLRP12 Missense_Mutation p.Q600H 0.20 tolerated(0.1) benign(0.004) TCGA-85-A5B5-01 19 55494794 55494794 G T NLRP2 Silent p.R576R 0.67 TCGA-85-A5B5-01 19 56539283 56539283 C T NLRP5 Missense_Mutation p.R562C 0.15 deleterious(0.05) benign(0.003) TCGA-85-A5B5-01 19 58017869 58017869 A G ZNF773 Missense_Mutation p.R136G 0.36 deleterious(0.01) benign(0.106) TCGA-85-A5B5-01 19 58197911 58197911 A G ZNF551 Missense_Mutation p.R90G 0.18 tolerated(0.08) benign(0.227) TCGA-85-A5B5-01 19 58199604 58199604 G T ZNF551 Missense_Mutation p.R654L 0.63 tolerated(0.17) possibly_damaging(0.566) TCGA-85-A5B5-01 19 58232391 58232391 C T ZNF671 Missense_Mutation p.G355S 0.24 tolerated(0.93) benign(0.153) TCGA-85-A5B5-01 19 58371119 58371119 A T ZNF587 Missense_Mutation p.R447W 0.77 tolerated(0.16) probably_damaging(0.972) TCGA-85-A5B5-01 19 59082386 59082386 C A MZF1 Missense_Mutation p.R124L 0.32 tolerated(0.19) benign(0.075) TCGA-85-A5B5-01 19 6707876 6707876 C T C3 Missense_Mutation p.G637D 0.37 tolerated(0.05) possibly_damaging(0.707) TCGA-85-A5B5-01 19 9076295 9076295 T C MUC16 Silent p.T3717T 0.28 TCGA-85-A5B5-01 19 9324759 9324759 T C OR7D4 Missense_Mutation p.Y252C 0.21 deleterious(0.02) benign(0.229) TCGA-85-A5B5-01 1 103483417 103483417 G T COL11A1 Missense_Mutation p.L458I 0.80 probably_damaging(0.977) TCGA-85-A5B5-01 1 110931926 110931926 T A SLC16A4 Missense_Mutation p.K7M 0.41 deleterious(0.01) possibly_damaging(0.823) TCGA-85-A5B5-01 1 114424555 114424555 C A BCL2L15 Missense_Mutation p.S105I 0.42 deleterious(0.01) possibly_damaging(0.814) TCGA-85-A5B5-01 1 13695742 13695742 C A PRAMEF19 Missense_Mutation p.S408I 0.52 benign(0.135) TCGA-85-A5B5-01 1 144879318 144879318 G A PDE4DIP Missense_Mutation p.R1378W 0.10 deleterious(0) probably_damaging(1) TCGA-85-A5B5-01 1 149785162 149785162 C A HIST2H3D Silent p.A25A 0.38 TCGA-85-A5B5-01 1 149858548 149858548 A T HIST2H2AC Silent p.G8G 0.38 TCGA-85-A5B5-01 1 152279849 152279849 G T FLG Missense_Mutation p.H2505N 0.20 possibly_damaging(0.713) TCGA-85-A5B5-01 1 152279850 152279850 G T FLG Silent p.S2504S 0.20 TCGA-85-A5B5-01 1 152285826 152285826 A T FLG Silent p.G512G 0.45 TCGA-85-A5B5-01 1 153916613 153916613 T A DENND4B Missense_Mutation p.S80C 0.45 deleterious(0) probably_damaging(0.983) TCGA-85-A5B5-01 1 154033016 154033016 C T NUP210L Silent p.E950E 0.11 TCGA-85-A5B5-01 1 156875159 156875159 C G PEAR1 Missense_Mutation p.H84D 0.33 deleterious(0.01) benign(0.104) TCGA-85-A5B5-01 1 158151854 158151854 G T CD1D Nonsense_Mutation p.E121* 0.19 TCGA-85-A5B5-01 1 158324365 158324365 G C CD1E Missense_Mutation p.S86T 0.40 deleterious(0.02) benign(0.014) TCGA-85-A5B5-01 1 158326303 158326303 T A CD1E Missense_Mutation p.F307Y 0.21 tolerated(1) benign(0.099) TCGA-85-A5B5-01 1 160156145 160156145 C T ATP1A4 Nonsense_Mutation p.Q1017* 0.54 TCGA-85-A5B5-01 1 161021191 161021191 G T ARHGAP30 Missense_Mutation p.R445S 0.39 deleterious(0) probably_damaging(0.992) TCGA-85-A5B5-01 1 162722905 162722905 G T DDR2 Missense_Mutation p.G35C 0.47 deleterious(0) probably_damaging(1) TCGA-85-A5B5-01 1 176564726 176564726 C A PAPPA2 Silent p.P662P 0.24 TCGA-85-A5B5-01 1 177199025 177199025 T A BRINP2 Missense_Mutation p.C5S 0.45 tolerated_low_confidence(0.72) benign(0) TCGA-85-A5B5-01 1 197890719 197890719 C A LHX9 Silent p.T221T 0.47 TCGA-85-A5B5-01 1 200960261 200960261 C A KIF21B Missense_Mutation p.R824L 0.59 deleterious(0.02) possibly_damaging(0.574) TCGA-85-A5B5-01 1 201839752 201839752 G T IPO9 Silent p.L725L 0.46 TCGA-85-A5B5-01 1 203020890 203020890 G A PPFIA4 5'UTR 0.25 TCGA-85-A5B5-01 1 20470053 20470053 G T PLA2G2F Missense_Mutation p.G95V 0.42 deleterious(0) probably_damaging(1) TCGA-85-A5B5-01 1 206231030 206231030 C - AVPR1B Frame_Shift_Del p.L389Sfs*7 0.26 TCGA-85-A5B5-01 1 210329246 210329246 A G SYT14 Missense_Mutation p.R494G 0.33 deleterious(0) possibly_damaging(0.469) TCGA-85-A5B5-01 1 216741439 216741439 C A ESRRG Silent p.G202G 0.39 TCGA-85-A5B5-01 1 222696012 222696012 G C HHIPL2 Missense_Mutation p.S702R 0.17 tolerated_low_confidence(0.32) benign(0.004) TCGA-85-A5B5-01 1 235973827 235973827 G C LYST Missense_Mutation p.N97K 0.48 tolerated_low_confidence(0.11) benign(0.08) TCGA-85-A5B5-01 1 237167605 237167605 T - MT1HL1 Frame_Shift_Del p.K23Sfs*? 0.35 TCGA-85-A5B5-01 1 241033373 241033373 C A RGS7 Missense_Mutation p.E144D 0.21 deleterious(0.04) probably_damaging(0.984) TCGA-85-A5B5-01 1 247752322 247752322 T A OR2G2 Missense_Mutation p.S221T 0.19 deleterious(0) benign(0.004) TCGA-85-A5B5-01 1 247902292 247902292 T A OR14K1 Missense_Mutation p.C126S 0.16 tolerated(0.09) benign(0.001) TCGA-85-A5B5-01 1 248569663 248569663 A G OR2T1 Missense_Mutation p.Y123C 0.41 deleterious(0.02) possibly_damaging(0.886) TCGA-85-A5B5-01 1 248790092 248790092 C A OR2T11 Missense_Mutation p.G113V 0.32 deleterious(0) possibly_damaging(0.793) TCGA-85-A5B5-01 1 248790093 248790093 C T OR2T11 Missense_Mutation p.G113S 0.30 tolerated(0.07) benign(0.091) TCGA-85-A5B5-01 1 34180287 34180287 G A CSMD2 Silent p.T1062T 0.36 TCGA-85-A5B5-01 1 38409525 38409525 C T INPP5B Missense_Mutation p.D65N 0.27 tolerated(0.15) benign(0.01) TCGA-85-A5B5-01 1 39797058 39797058 G T MACF1 Intron 0.51 TCGA-85-A5B5-01 1 60139745 60139745 C G FGGY Silent p.S508S 0.76 TCGA-85-A5B5-01 1 67340467 67340467 A T WDR78 Missense_Mutation p.V266E 0.39 deleterious(0) possibly_damaging(0.714) TCGA-85-A5B5-01 1 68947194 68947194 G A DEPDC1 Missense_Mutation p.R622C 0.38 deleterious(0.02) benign(0.165) TCGA-85-A5B5-01 1 84815557 84815557 G A SAMD13 3'UTR 0.33 TCGA-85-A5B5-01 1 86939106 86939106 G T CLCA1 Missense_Mutation p.V57L 0.44 tolerated(0.06) possibly_damaging(0.544) TCGA-85-A5B5-01 1 92613270 92613270 G C BTBD8 Missense_Mutation p.W350S 0.81 deleterious(0) possibly_damaging(0.871) TCGA-85-A5B5-01 20 21362654 21362654 G C XRN2 Missense_Mutation p.W869C 0.45 deleterious_low_confidence(0) possibly_damaging(0.628) TCGA-85-A5B5-01 20 23016966 23016966 C A SSTR4 Missense_Mutation p.N282K 0.10 deleterious(0) possibly_damaging(0.515) TCGA-85-A5B5-01 20 257758 257758 C A C20orf96 Missense_Mutation p.R251L 0.40 tolerated(0.08) probably_damaging(0.93) TCGA-85-A5B5-01 20 30408272 30408272 A T MYLK2 Silent p.A132A 0.15 TCGA-85-A5B5-01 20 3128734 3128734 G A FASTKD5 Missense_Mutation p.S328L 0.43 deleterious(0) probably_damaging(0.989) TCGA-85-A5B5-01 20 34085839 34085839 A T CEP250 Missense_Mutation p.R1200W 0.35 probably_damaging(0.967) TCGA-85-A5B5-01 20 35262014 35262014 C G SLA2 Silent p.T70T 0.39 TCGA-85-A5B5-01 20 3673414 3673414 G C SIGLEC1 Missense_Mutation p.R1262G 0.32 deleterious(0.01) probably_damaging(0.942) TCGA-85-A5B5-01 20 42695487 42695487 A T TOX2 Missense_Mutation p.S492C 0.19 deleterious_low_confidence(0) possibly_damaging(0.688) TCGA-85-A5B5-01 20 44184417 44184417 A T WFDC8 Missense_Mutation p.F123Y 0.09 deleterious(0.02) probably_damaging(0.997) TCGA-85-A5B5-01 20 44571753 44571753 G T PCIF1 Nonsense_Mutation p.E231* 0.30 TCGA-85-A5B5-01 20 51872170 51872170 A T TSHZ2 Missense_Mutation p.T725S 0.51 deleterious(0.04) benign(0.068) TCGA-85-A5B5-01 20 62121864 62121864 G T EEF1A2 Missense_Mutation p.P333T 0.47 deleterious_low_confidence(0) probably_damaging(1) TCGA-85-A5B5-01 21 10906912 10906912 G T TPTE Missense_Mutation p.S550Y 0.11 deleterious_low_confidence(0.01) benign(0.069) TCGA-85-A5B5-01 21 31812915 31812915 C T KRTAP15-1 Silent p.N90N 0.45 TCGA-85-A5B5-01 21 40665797 40665797 C A BRWD1 Missense_Mutation p.L257F 0.45 deleterious(0.05) probably_damaging(0.986) TCGA-85-A5B5-01 22 16278082 16278082 A C POTEH Intron 0.30 TCGA-85-A5B5-01 22 16449038 16449038 C A OR11H1 Missense_Mutation p.C256F 0.14 deleterious(0) probably_damaging(0.995) TCGA-85-A5B5-01 22 17073152 17073152 G A CCT8L2 Nonsense_Mutation p.Q97* 0.16 TCGA-85-A5B5-01 22 23503074 23503074 G A RAB36 Missense_Mutation p.V276M 0.19 deleterious(0) probably_damaging(0.993) TCGA-85-A5B5-01 22 27024260 27024260 T C CRYBA4 Silent p.R103R 0.59 TCGA-85-A5B5-01 22 31487303 31487303 G C SMTN Missense_Mutation p.G432R 0.59 deleterious(0) probably_damaging(0.924) TCGA-85-A5B5-01 22 32614682 32614682 T C SLC5A4 Missense_Mutation p.K600R 0.70 tolerated(0.86) benign(0.005) TCGA-85-A5B5-01 22 33402529 33402529 A G SYN3 Missense_Mutation p.M40T 0.23 tolerated(0.59) unknown(0) TCGA-85-A5B5-01 22 39411697 39411697 G A APOBEC3C Missense_Mutation p.V39M 0.20 tolerated(0.17) benign(0.034) TCGA-85-A5B5-01 22 40798178 40798178 C T SGSM3 Silent p.Y42Y 0.05 TCGA-85-A5B5-01 22 42166779 42166779 T C MEI1 Silent p.F786F 0.20 TCGA-85-A5B5-01 22 50719897 50719897 C T PLXNB2 Missense_Mutation p.G1185D 0.28 deleterious(0.02) probably_damaging(1) TCGA-85-A5B5-01 2 100199370 100199370 C A AFF3 Missense_Mutation p.D920Y 0.38 deleterious(0) possibly_damaging(0.596) TCGA-85-A5B5-01 2 100623232 100623232 A T AFF3 Silent p.P270P 0.38 TCGA-85-A5B5-01 2 11053673 11053673 G T KCNF1 Missense_Mutation p.G374V 0.26 deleterious(0) probably_damaging(1) TCGA-85-A5B5-01 2 11740982 11740982 G A GREB1 Missense_Mutation p.R797Q 0.67 tolerated(0.09) possibly_damaging(0.559) TCGA-85-A5B5-01 2 1488576 1488576 G A TPO Missense_Mutation p.G516E 0.15 tolerated(0.97) benign(0.045) TCGA-85-A5B5-01 2 152279513 152279513 A C RIF1 Missense_Mutation p.Y248S 0.25 deleterious(0.03) probably_damaging(0.988) TCGA-85-A5B5-01 2 152500361 152500361 C A NEB Missense_Mutation p.A2643S 0.30 probably_damaging(0.999) TCGA-85-A5B5-01 2 154801048 154801048 C A GALNT13 Missense_Mutation p.T13N 0.21 deleterious(0) probably_damaging(0.929) TCGA-85-A5B5-01 2 163031450 163031450 C A FAP Silent p.L632L 0.52 TCGA-85-A5B5-01 2 168102440 168102440 C A XIRP2 Missense_Mutation p.T1513N 0.53 benign(0.36) TCGA-85-A5B5-01 2 175677060 175677060 C A CHN1 Missense_Mutation p.C288F 0.15 deleterious(0) probably_damaging(1) TCGA-85-A5B5-01 2 177016408 177016408 A G HOXD4 Missense_Mutation p.K16R 0.21 deleterious(0.01) benign(0.253) TCGA-85-A5B5-01 2 179416719 179416719 T C TTN Missense_Mutation p.N30303S 0.31 TCGA-85-A5B5-01 2 179455350 179455350 G T TTN Missense_Mutation p.P20368T 0.28 TCGA-85-A5B5-01 2 179606072 179606072 C G TTN Missense_Mutation p.G3963A 0.28 TCGA-85-A5B5-01 2 18113314 18113314 A G KCNS3 Missense_Mutation p.K347E 0.19 deleterious(0.02) probably_damaging(0.959) TCGA-85-A5B5-01 2 182414390 182414390 A G CERKL Missense_Mutation p.V315A 0.58 tolerated(0.48) benign(0.074) TCGA-85-A5B5-01 2 182468756 182468756 C G CERKL Missense_Mutation p.D97H 0.64 deleterious(0) probably_damaging(0.96) TCGA-85-A5B5-01 2 183829461 183829461 T C NCKAP1 Silent p.A574A 0.22 TCGA-85-A5B5-01 2 196791266 196791266 A T DNAH7 Missense_Mutation p.Y1166N 0.36 deleterious(0) probably_damaging(0.996) TCGA-85-A5B5-01 2 197298184 197298184 T A HECW2 Splice_Site 0.42 TCGA-85-A5B5-01 2 198498471 198498471 G A RFTN2 Missense_Mutation p.P230L 0.38 deleterious(0.03) benign(0.073) TCGA-85-A5B5-01 2 202466467 202466467 C A ALS2CR11 Missense_Mutation p.V171L 0.29 deleterious(0.03) benign(0.115) TCGA-85-A5B5-01 2 210559124 210559124 G A MAP2 Missense_Mutation p.D744N 0.45 deleterious(0) probably_damaging(1) TCGA-85-A5B5-01 2 210658516 210658516 C A UNC80 Silent p.R291R 0.31 TCGA-85-A5B5-01 2 216293011 216293011 A C FN1 Missense_Mutation p.W246G 0.12 deleterious(0) probably_damaging(0.998) TCGA-85-A5B5-01 2 223066812 223066812 G A PAX3 Missense_Mutation p.T424M 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.462) TCGA-85-A5B5-01 2 234072429 234072429 G A INPP5D Silent p.A427A 0.06 TCGA-85-A5B5-01 2 238462239 238462239 G T MLPH 3'UTR 0.40 TCGA-85-A5B5-01 2 242011284 242011284 G T SNED1 Missense_Mutation p.V1270L 0.33 tolerated(0.35) benign(0.006) TCGA-85-A5B5-01 2 27505657 27505657 C A TRIM54 Missense_Mutation p.L20M 0.65 deleterious(0) probably_damaging(0.914) TCGA-85-A5B5-01 2 40655941 40655941 G A SLC8A1 Missense_Mutation p.H494Y 0.68 deleterious(0.01) possibly_damaging(0.842) TCGA-85-A5B5-01 2 40656844 40656844 C T SLC8A1 Missense_Mutation p.G193R 0.70 deleterious(0) probably_damaging(0.999) TCGA-85-A5B5-01 2 77746404 77746404 G T LRRTM4 Silent p.S197S 0.60 TCGA-85-A5B5-01 2 79385890 79385890 C A REG3A Nonsense_Mutation p.E28* 0.44 TCGA-85-A5B5-01 2 80529689 80529689 G T LRRTM1 Missense_Mutation p.A419D 0.25 tolerated(0.66) benign(0.027) TCGA-85-A5B5-01 2 88082514 88082514 C T RGPD2 Silent p.E1343E 0.23 TCGA-85-A5B5-01 2 8873780 8873780 C A KIDINS220 Missense_Mutation p.V1283L 0.29 tolerated(0.77) benign(0.002) TCGA-85-A5B5-01 2 95481409 95481409 C A ANKRD20A8P RNA 0.32 TCGA-85-A5B5-01 2 95511151 95511151 T C RNU6-1320P 3'Flank 0.41 TCGA-85-A5B5-01 3 100489737 100489737 C A ABI3BP Missense_Mutation p.V820F 0.24 deleterious(0) probably_damaging(0.954) TCGA-85-A5B5-01 3 108724046 108724046 T A MORC1 Silent p.T628T 0.92 TCGA-85-A5B5-01 3 109128895 109128895 C G RP11-702L6.4 RNA 0.88 TCGA-85-A5B5-01 3 113697175 113697175 C G KIAA1407 Missense_Mutation p.V822L 0.96 tolerated(1) benign(0.003) TCGA-85-A5B5-01 3 113955679 113955679 C T ZNF80 Silent p.E81E 0.92 TCGA-85-A5B5-01 3 114026910 114026910 C A TIGIT Missense_Mutation p.H223N 0.28 tolerated(0.05) benign(0.046) TCGA-85-A5B5-01 3 114026973 114026973 G C TIGIT Missense_Mutation p.G244R 0.32 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-85-A5B5-01 3 114069858 114069858 C A ZBTB20 Missense_Mutation p.C356F 0.92 deleterious(0) probably_damaging(0.962) TCGA-85-A5B5-01 3 122003046 122003046 T A CASR Missense_Mutation p.S759T 0.33 tolerated(0.49) benign(0.068) TCGA-85-A5B5-01 3 123419791 123419791 C T MYLK Missense_Mutation p.G842S 0.13 tolerated(0.24) benign(0.003) TCGA-85-A5B5-01 3 126133021 126133021 C A CCDC37 Missense_Mutation p.S75Y 0.25 deleterious(0.03) benign(0.101) TCGA-85-A5B5-01 3 130289706 130289706 A T COL6A6 Missense_Mutation p.S816C 0.16 deleterious(0.04) probably_damaging(0.999) TCGA-85-A5B5-01 3 140998263 140998263 C T ACPL2 Silent p.F94F 0.21 TCGA-85-A5B5-01 3 148857893 148857893 G T HPS3 Missense_Mutation p.R107L 0.19 deleterious(0) probably_damaging(0.969) TCGA-85-A5B5-01 3 154018436 154018436 C T DHX36 Missense_Mutation p.V470I 0.37 tolerated(1) benign(0.001) TCGA-85-A5B5-01 3 164777708 164777708 C T SI Silent p.R376R 0.09 TCGA-85-A5B5-01 3 164783117 164783117 T A SI Nonsense_Mutation p.K247* 0.27 TCGA-85-A5B5-01 3 170732497 170732497 A G SLC2A2 Silent p.H44H 0.93 TCGA-85-A5B5-01 3 186459329 186459329 C T KNG1 Missense_Mutation p.P382S 0.29 deleterious(0) probably_damaging(0.994) TCGA-85-A5B5-01 3 191179233 191179233 G T PYDC2 Missense_Mutation p.M94I 0.21 tolerated_low_confidence(0.05) benign(0.011) TCGA-85-A5B5-01 3 33194372 33194372 G T SUSD5 Nonsense_Mutation p.C584* 0.36 TCGA-85-A5B5-01 3 38739041 38739041 T A SCN10A Silent p.P1890P 0.81 TCGA-85-A5B5-01 3 38936294 38936294 G T SCN11A Missense_Mutation p.H855Q 0.33 tolerated(0.56) benign(0.178) TCGA-85-A5B5-01 3 39227505 39227505 G T XIRP1 Silent p.T1144T 0.64 TCGA-85-A5B5-01 3 44700955 44700955 G T ZNF35 Missense_Mutation p.C367F 0.92 deleterious(0) probably_damaging(1) TCGA-85-A5B5-01 3 56628034 56628034 G T CCDC66 Missense_Mutation p.R461L 0.71 deleterious(0) probably_damaging(0.998) TCGA-85-A5B5-01 3 63638457 63638457 A T SNTN Missense_Mutation p.R32W 0.43 deleterious(0.01) possibly_damaging(0.891) TCGA-85-A5B5-01 3 77147338 77147338 C A ROBO2 Silent p.R95R 0.34 TCGA-85-A5B5-01 3 97202903 97202903 G C EPHA6 Missense_Mutation p.G734R 0.30 deleterious(0) probably_damaging(1) TCGA-85-A5B5-01 4 101109041 101109041 C G DDIT4L Silent p.V125V 0.29 TCGA-85-A5B5-01 4 104511129 104511129 C A TACR3 Missense_Mutation p.A370S 0.35 deleterious(0) possibly_damaging(0.702) TCGA-85-A5B5-01 4 143003332 143003332 G T INPP4B Missense_Mutation p.R832S 0.26 deleterious(0) probably_damaging(1) TCGA-85-A5B5-01 4 145580817 145580817 C A HHIP Missense_Mutation p.Q220K 0.24 tolerated(0.18) benign(0.09) TCGA-85-A5B5-01 4 153268145 153268145 T C FBXW7 Silent p.Q221Q 0.27 TCGA-85-A5B5-01 4 154237063 154237063 G C TRIM2 Missense_Mutation p.G565A 0.57 deleterious(0.03) probably_damaging(0.991) TCGA-85-A5B5-01 4 15629554 15629554 A T FBXL5 Missense_Mutation p.V332E 0.71 deleterious(0) probably_damaging(0.998) TCGA-85-A5B5-01 4 156723426 156723426 G A GUCY1B3 Intron 0.41 TCGA-85-A5B5-01 4 173803989 173803989 T G GALNTL6 Missense_Mutation p.F324L 0.63 deleterious(0) probably_damaging(0.999) TCGA-85-A5B5-01 4 177071623 177071623 C G WDR17 Missense_Mutation p.P752R 0.25 deleterious(0) probably_damaging(0.999) TCGA-85-A5B5-01 4 39839795 39839795 T C PDS5A Missense_Mutation p.I1231V 0.45 tolerated_low_confidence(0.29) benign(0.001) TCGA-85-A5B5-01 4 42558058 42558058 C T ATP8A1 Splice_Site p.X447_splice 0.68 TCGA-85-A5B5-01 4 46264043 46264043 C T GABRA2 Missense_Mutation p.C320Y 0.58 deleterious(0.03) probably_damaging(0.996) TCGA-85-A5B5-01 4 46973234 46973234 G T GABRA4 Missense_Mutation p.T247K 0.49 deleterious(0) probably_damaging(1) TCGA-85-A5B5-01 4 76805855 76805855 C A PPEF2 Missense_Mutation p.G213V 0.24 deleterious(0) probably_damaging(1) TCGA-85-A5B5-01 4 76928576 76928576 G A CXCL9 Silent p.L9L 0.32 TCGA-85-A5B5-01 4 77274323 77274323 G A CCDC158 Missense_Mutation p.R800C 0.30 deleterious(0) possibly_damaging(0.606) TCGA-85-A5B5-01 4 79400788 79400788 A T FRAS1 Missense_Mutation p.T2787S 0.29 benign(0) TCGA-85-A5B5-01 4 8584262 8584262 C A GPR78 Silent p.R225R 0.80 TCGA-85-A5B5-01 4 90170603 90170603 T C GPRIN3 Missense_Mutation p.E220G 0.27 deleterious(0.02) benign(0.044) TCGA-85-A5B5-01 5 13769713 13769713 C A DNAH5 Missense_Mutation p.G3206V 0.23 probably_damaging(0.988) TCGA-85-A5B5-01 5 140480968 140480968 G A PCDHB3 Silent p.P245P 0.36 TCGA-85-A5B5-01 5 140625343 140625343 T G PCDHB15 Missense_Mutation p.V66G 0.79 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-85-A5B5-01 5 141248653 141248653 A C PCDH1 Silent p.P128P 0.43 TCGA-85-A5B5-01 5 146775201 146775202 GG A DPYSL3 Frame_Shift_Del p.P629Lfs*16 0.49 TCGA-85-A5B5-01 5 156608115 156608115 G T ITK Missense_Mutation p.D43Y 0.78 tolerated(1) benign(0.009) TCGA-85-A5B5-01 5 179555545 179555546 - T RASGEF1C Frame_Shift_Ins p.P170Afs*53 0.24 TCGA-85-A5B5-01 5 26885850 26885850 A T CDH9 Silent p.T585T 0.33 TCGA-85-A5B5-01 5 31983434 31983434 G C PDZD2 Missense_Mutation p.R217T 0.16 deleterious(0) probably_damaging(0.999) TCGA-85-A5B5-01 5 36671297 36671297 A T SLC1A3 Silent p.V162V 0.36 TCGA-85-A5B5-01 5 38406280 38406280 G T EGFLAM Missense_Mutation p.M255I 0.19 tolerated_low_confidence(0.07) benign(0.028) TCGA-85-A5B5-01 5 434521 434521 G T AHRR Missense_Mutation p.G578W 0.50 deleterious(0) probably_damaging(0.999) TCGA-85-A5B5-01 5 45262330 45262330 G T HCN1 Nonsense_Mutation p.S789* 0.25 TCGA-85-A5B5-01 5 57913685 57913685 G - RAB3C Frame_Shift_Del p.K80Nfs*29 0.12 TCGA-85-A5B5-01 5 59284419 59284419 C T PDE4D Silent p.L56L 0.36 TCGA-85-A5B5-01 5 78328588 78328588 G C DMGDH Missense_Mutation p.S480C 0.37 deleterious(0.04) possibly_damaging(0.447) TCGA-85-A5B5-01 5 89802370 89802370 A C POLR3G Missense_Mutation p.E155A 0.84 tolerated(0.08) unknown(0) TCGA-85-A5B5-01 6 100056647 100056647 G C PRDM13 Missense_Mutation p.E59Q 0.34 deleterious(0) probably_damaging(0.998) TCGA-85-A5B5-01 6 112443317 112443317 G C LAMA4 Missense_Mutation p.L1459V 0.37 deleterious(0) benign(0.405) TCGA-85-A5B5-01 6 117130697 117130697 A T GPRC6A Missense_Mutation p.V93D 0.51 deleterious(0) possibly_damaging(0.892) TCGA-85-A5B5-01 6 132021826 132021826 G C OR2A4 Missense_Mutation p.T239S 0.42 deleterious(0) probably_damaging(0.986) TCGA-85-A5B5-01 6 13228216 13228216 C A PHACTR1 Nonsense_Mutation p.Y385* 0.82 TCGA-85-A5B5-01 6 132892376 132892376 A G TAAR6 Missense_Mutation p.M306V 0.24 tolerated(0.25) benign(0.012) TCGA-85-A5B5-01 6 150001590 150001590 C T LATS1 Missense_Mutation p.G672R 0.32 deleterious(0.01) benign(0.077) TCGA-85-A5B5-01 6 152847278 152847278 A C SYNE1 Missense_Mutation p.F54L 0.50 probably_damaging(0.975) TCGA-85-A5B5-01 6 15496763 15496763 G T JARID2 Missense_Mutation p.G436V 0.54 deleterious_low_confidence(0) probably_damaging(1) TCGA-85-A5B5-01 6 155131310 155131310 G A SCAF8 Missense_Mutation p.G463E 0.23 deleterious(0) probably_damaging(1) TCGA-85-A5B5-01 6 21594819 21594819 G A SOX4 Silent p.E18E 0.35 TCGA-85-A5B5-01 6 31632248 31632248 C A GPANK1 Missense_Mutation p.R3L 0.69 tolerated(0.11) benign(0.005) TCGA-85-A5B5-01 6 32020668 32020668 G - TNXB Frame_Shift_Del p.P2963Lfs*4 0.44 TCGA-85-A5B5-01 6 33996039 33996039 C T GRM4 Silent p.P849P 0.37 TCGA-85-A5B5-01 6 36298106 36298106 C G C6orf222 Missense_Mutation p.R121T 0.80 deleterious(0.01) benign(0.026) TCGA-85-A5B5-01 6 37626105 37626105 G C MDGA1 Missense_Mutation p.R100G 0.47 deleterious(0) probably_damaging(0.997) TCGA-85-A5B5-01 6 38913311 38913311 C A DNAH8 Missense_Mutation p.L3809M 0.36 probably_damaging(1) TCGA-85-A5B5-01 6 47759544 47759544 G A OPN5 Missense_Mutation p.G86D 0.42 tolerated(0.05) probably_damaging(1) TCGA-85-A5B5-01 6 55120155 55120155 G A HCRTR2 Silent p.T208T 0.25 TCGA-85-A5B5-01 6 56476383 56476383 C T DST Silent p.E1153E 0.16 TCGA-85-A5B5-01 6 63990168 63990168 C T LGSN Missense_Mutation p.G430R 0.15 tolerated(0.06) probably_damaging(0.984) TCGA-85-A5B5-01 6 76660633 76660633 G A IMPG1 Silent p.S490S 0.38 TCGA-85-A5B5-01 6 84862877 84862877 C A KIAA1009 Nonsense_Mutation p.E1006* 0.37 TCGA-85-A5B5-01 6 87796085 87796085 G A CGA Silent p.C52C 0.33 TCGA-85-A5B5-01 6 89981374 89981374 C A GABRR2 Missense_Mutation p.M96I 0.50 deleterious(0.03) probably_damaging(0.989) TCGA-85-A5B5-01 6 97053865 97053865 C A FHL5 Missense_Mutation p.P141H 0.43 deleterious(0) probably_damaging(1) TCGA-85-A5B5-01 7 100686943 100686943 G T MUC17 Silent p.T4082T 0.50 TCGA-85-A5B5-01 7 100867103 100867103 G T ZNHIT1 Silent p.L141L 0.27 TCGA-85-A5B5-01 7 102097945 102097945 T C ALKBH4 Missense_Mutation p.T269A 0.28 tolerated(0.06) possibly_damaging(0.826) TCGA-85-A5B5-01 7 102939132 102939132 G A PMPCB Missense_Mutation p.D73N 0.50 tolerated(0.49) benign(0.008) TCGA-85-A5B5-01 7 117232707 117232707 T G CFTR Nonsense_Mutation p.L829* 0.32 TCGA-85-A5B5-01 7 129914997 129914997 C T CPA2 Silent p.T165T 0.16 TCGA-85-A5B5-01 7 129986302 129986302 C T CPA5 5'UTR 0.49 TCGA-85-A5B5-01 7 134881017 134881017 C G WDR91 Missense_Mutation p.E375Q 0.16 tolerated(0.3) benign(0.247) TCGA-85-A5B5-01 7 151970812 151970812 G T KMT2C Missense_Mutation p.H330Q 0.09 probably_damaging(0.999) TCGA-85-A5B5-01 7 15726000 15726000 G T MEOX2 Missense_Mutation p.R10S 0.62 deleterious(0) probably_damaging(0.972) TCGA-85-A5B5-01 7 157370747 157370747 G T PTPRN2 Missense_Mutation p.P861Q 0.40 deleterious(0) probably_damaging(1) TCGA-85-A5B5-01 7 23811803 23811803 C A STK31 Missense_Mutation p.P624H 0.44 deleterious(0) probably_damaging(0.97) TCGA-85-A5B5-01 7 31614356 31614356 G A CCDC129 Missense_Mutation p.G226S 0.50 tolerated(0.17) benign(0.266) TCGA-85-A5B5-01 7 38402569 38402569 C A TRGV2 Missense_Mutation p.G84W 0.45 deleterious(0.05) benign(0.077) TCGA-85-A5B5-01 7 45143953 45143953 T C TBRG4 Intron 0.41 TCGA-85-A5B5-01 7 73010083 73010083 G A MLXIPL Nonsense_Mutation p.Q732* 0.38 TCGA-85-A5B5-01 7 73245565 73245565 G T CLDN4 Missense_Mutation p.A12S 0.39 tolerated(0.34) benign(0.124) TCGA-85-A5B5-01 7 81336625 81336625 G T HGF Silent p.R533R 0.30 TCGA-85-A5B5-01 7 81579718 81579718 C A CACNA2D1 Missense_Mutation p.R1089L 0.23 tolerated_low_confidence(0.56) benign(0) TCGA-85-A5B5-01 7 82430871 82430871 T A PCLO Missense_Mutation p.K4990N 0.34 unknown(0) TCGA-85-A5B5-01 7 88423517 88423517 C T C7orf62 Nonsense_Mutation p.W247* 0.35 TCGA-85-A5B5-01 7 88963118 88963118 C T ZNF804B Silent p.H274H 0.32 TCGA-85-A5B5-01 7 92210867 92210867 A T FAM133B Silent p.S25S 0.42 TCGA-85-A5B5-01 7 95625370 95625370 C A DYNC1I1 Nonsense_Mutation p.Y335* 0.30 TCGA-85-A5B5-01 7 99514381 99514381 C T TRIM4 Missense_Mutation p.V139M 0.48 tolerated(0.37) benign(0) TCGA-85-A5B5-01 7 99709801 99709801 G A TAF6 Missense_Mutation p.S254F 0.36 deleterious(0) probably_damaging(0.996) TCGA-85-A5B5-01 7 99746586 99746586 G T LAMTOR4 5'UTR 0.24 TCGA-85-A5B5-01 7 99773976 99773976 C A GPC2 Missense_Mutation p.R60L 0.52 deleterious(0) possibly_damaging(0.899) TCGA-85-A5B5-01 8 105360934 105360934 T A DCSTAMP Missense_Mutation p.C52S 0.19 tolerated(0.33) benign(0) TCGA-85-A5B5-01 8 110355793 110355793 A G ENY2 3'UTR 0.30 TCGA-85-A5B5-01 8 110431367 110431367 C T PKHD1L1 Missense_Mutation p.T801M 0.43 deleterious(0.01) possibly_damaging(0.466) TCGA-85-A5B5-01 8 110457087 110457087 G T PKHD1L1 Silent p.L1663L 0.22 TCGA-85-A5B5-01 8 125072655 125072655 A T FER1L6 Intron 0.55 TCGA-85-A5B5-01 8 125989462 125989462 C T ZNF572 Missense_Mutation p.H318Y 0.14 deleterious(0) probably_damaging(1) TCGA-85-A5B5-01 8 133919017 133919017 C T TG Missense_Mutation p.S1240F 0.14 tolerated(0.06) benign(0.051) TCGA-85-A5B5-01 8 139603724 139603724 C A COL22A1 Missense_Mutation p.D1546Y 0.29 unknown(0) TCGA-85-A5B5-01 8 24774696 24774696 C A NEFM Missense_Mutation p.A443D 0.31 deleterious(0.05) unknown(0) TCGA-85-A5B5-01 8 38065056 38065056 G T BAG4 Silent p.A135A 0.87 TCGA-85-A5B5-01 8 49987881 49987881 C A C8orf22 3'UTR 0.48 TCGA-85-A5B5-01 8 51621485 51621485 G T SNTG1 Nonsense_Mutation p.G411* 0.15 TCGA-85-A5B5-01 8 55370761 55370761 C G SOX17 Silent p.P21P 0.31 TCGA-85-A5B5-01 8 67922952 67922952 T A PPP1R42 Nonsense_Mutation p.K184* 0.45 TCGA-85-A5B5-01 8 71495489 71495489 G A TRAM1 Nonsense_Mutation p.R321* 0.37 TCGA-85-A5B5-01 8 74601027 74601027 G A STAU2 Missense_Mutation p.L46F 0.21 tolerated(0.05) probably_damaging(1) TCGA-85-A5B5-01 8 95942677 95942677 A T TP53INP1 3'UTR 0.37 TCGA-85-A5B5-01 8 97172847 97172847 T C GDF6 Missense_Mutation p.Q25R 0.44 tolerated(0.05) possibly_damaging(0.462) TCGA-85-A5B5-01 8 98155481 98155481 T C CPQ 3'UTR 0.19 TCGA-85-A5B5-01 8 98289217 98289217 C G TSPYL5 Missense_Mutation p.G286R 0.13 tolerated(0.98) probably_damaging(0.999) TCGA-85-A5B5-01 8 99440644 99440644 C A KCNS2 Missense_Mutation p.S146Y 0.50 deleterious(0.01) probably_damaging(0.986) TCGA-85-A5B5-01 8 99468137 99468137 T C STK3 Missense_Mutation p.Y498C 0.48 deleterious(0) probably_damaging(1) TCGA-85-A5B5-01 9 101068513 101068513 C A GABBR2 Missense_Mutation p.A707S 0.91 tolerated(0.05) possibly_damaging(0.824) TCGA-85-A5B5-01 9 105767397 105767397 A C CYLC2 Missense_Mutation p.K162Q 0.08 deleterious(0.03) unknown(0) TCGA-85-A5B5-01 9 123627992 123627992 C A PHF19 Missense_Mutation p.G299V 0.20 deleterious(0) probably_damaging(1) TCGA-85-A5B5-01 9 130860918 130860918 G T SLC25A25 Intron 0.53 TCGA-85-A5B5-01 9 136270558 136270558 A G C9orf96 3'UTR 0.24 TCGA-85-A5B5-01 9 19550176 19550176 C T SLC24A2 Missense_Mutation p.V480M 0.80 tolerated(0.09) benign(0.358) TCGA-85-A5B5-01 9 21974695 21974695 G T CDKN2A Nonsense_Mutation p.Y44* 0.81 TCGA-85-A5B5-01 9 3293098 3293098 C T RFX3 Missense_Mutation p.R237Q 0.08 deleterious(0) probably_damaging(0.925) TCGA-85-A5B5-01 9 35689965 35689965 C A TPM2 5'UTR 0.50 TCGA-85-A5B5-01 9 43816748 43816748 A T CNTNAP3B Missense_Mutation p.N285I 0.46 deleterious(0) possibly_damaging(0.812) TCGA-85-A5B5-01 9 73399101 73399101 G C TRPM3 Silent p.P356P 0.43 TCGA-85-A5B5-01 9 77390857 77390857 G T TRPM6 Silent p.L1115L 0.34 TCGA-85-A5B5-01 9 84603834 84603834 G T SPATA31D1 Missense_Mutation p.G34V 0.91 deleterious(0.01) probably_damaging(0.984) TCGA-85-A5B5-01 9 84603835 84603835 G T SPATA31D1 Silent p.G34G 0.90 TCGA-85-A5B5-01 9 86585178 86585178 C T HNRNPK Silent p.S420S 0.15 TCGA-85-A5B5-01 9 86902964 86902964 C A SLC28A3 Missense_Mutation p.G427C 0.26 deleterious(0) probably_damaging(0.998) TCGA-85-A5B5-01 9 96318679 96318679 C G FAM120A Missense_Mutation p.P764A 0.28 tolerated(1) benign(0.051) TCGA-85-A5B5-01 X 106459915 106459915 T A PIH1D3 Silent p.S56S 0.82 TCGA-85-A5B5-01 X 129629835 129629835 G A RP1-274L7.1 Intron 0.38 TCGA-85-A5B5-01 X 138612926 138612926 G T F9 Translation_Start_Site p.M1? 0.35 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-85-A5B5-01 X 139866383 139866383 G C CDR1 Missense_Mutation p.A50G 0.41 tolerated(0.37) possibly_damaging(0.567) TCGA-85-A5B5-01 X 141291618 141291618 G A MAGEC2 Silent p.P52P 0.85 TCGA-85-A5B5-01 X 142716478 142716478 G T SLITRK4 Missense_Mutation p.A816E 0.83 deleterious(0.03) possibly_damaging(0.63) TCGA-85-A5B5-01 X 24080553 24080553 C T EIF2S3 Nonsense_Mutation p.Q167* 0.46 TCGA-85-A5B5-01 X 30236712 30236712 G T MAGEB2 Missense_Mutation p.Q5H 0.20 tolerated(0.18) benign(0.405) TCGA-85-A5B5-01 X 32459419 32459419 A G DMD Missense_Mutation p.C1267R 0.49 possibly_damaging(0.879) TCGA-85-A5B5-01 X 32662337 32662337 C T DMD Missense_Mutation p.D415N 0.89 possibly_damaging(0.833) TCGA-85-A5B5-01 X 37029249 37029249 C T FAM47C Silent p.I922I 0.83 TCGA-85-A5B5-01 X 45010951 45010951 A T CXorf36 Nonsense_Mutation p.C416* 0.36 TCGA-85-A5B5-01 X 47837190 47837190 C T ZNF182 Missense_Mutation p.C99Y 0.48 tolerated(1) benign(0) TCGA-85-A5B5-01 X 48888985 48888985 T A TFE3 Missense_Mutation p.Q404L 0.72 deleterious(0.01) benign(0) TCGA-85-A5B5-01 X 73963327 73963327 C T KIAA2022 Silent p.L355L 0.38 TCGA-85-A5B5-01 X 75003817 75003817 G T MAGEE2 Missense_Mutation p.T357N 0.41 tolerated(0.29) probably_damaging(0.997) TCGA-85-A5B5-01 X 91642926 91642926 G T PCDH11X Nonsense_Mutation p.E1113* 0.81 TCGA-85-A5B5-01 X 92928034 92928034 G C NAP1L3 Silent p.A90A 0.35 TCGA-85-A5B5-01 Y 4968463 4968463 G T PCDH11Y Missense_Mutation p.M948I 0.23 tolerated(0.27) benign(0.003) TCGA-90-7766-01 10 113915677 113915677 C A GPAM Silent p.L752L 0.21 TCGA-90-7766-01 10 135168851 135168851 G A FUOM 3'UTR 0.27 TCGA-90-7766-01 10 15686031 15686031 G T ITGA8 Missense_Mutation p.P466Q 0.33 deleterious(0) probably_damaging(1) TCGA-90-7766-01 10 5929809 5929809 C A ANKRD16 Splice_Site p.X179_splice 0.36 TCGA-90-7766-01 10 86004883 86004883 G C RGR Missense_Mutation p.E13Q 0.24 deleterious(0.01) probably_damaging(0.991) TCGA-90-7766-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.25 TCGA-90-7766-01 11 107501245 107501245 C T ELMOD1 Silent p.I40I 0.23 TCGA-90-7766-01 11 12535544 12535544 A G PARVA Missense_Mutation p.T307A 0.30 tolerated(0.32) benign(0.02) TCGA-90-7766-01 11 14865400 14865400 G A PDE3B Missense_Mutation p.R783Q 0.26 tolerated(0.49) benign(0.006) TCGA-90-7766-01 11 20139945 20139945 C T NAV2 3'UTR 0.33 TCGA-90-7766-01 11 48346576 48346576 G - OR4C3 Frame_Shift_Del p.D29Tfs*30 0.19 TCGA-90-7766-01 11 55761936 55761936 G T OR5F1 Missense_Mutation p.H56N 0.30 deleterious(0) benign(0.077) TCGA-90-7766-01 11 55890588 55890588 G A OR8H3 Missense_Mutation p.G247E 0.27 deleterious(0) probably_damaging(0.97) TCGA-90-7766-01 11 56000481 56000481 C T OR5T2 Missense_Mutation p.E61K 0.24 tolerated(0.06) benign(0.049) TCGA-90-7766-01 11 56085897 56085897 G A OR8K3 Missense_Mutation p.V39M 0.26 tolerated_low_confidence(0.07) benign(0.223) TCGA-90-7766-01 11 59211385 59211385 G A OR5A1 Silent p.L248L 0.27 TCGA-90-7766-01 11 59211571 59211571 G C OR5A1 Missense_Mutation p.R310S 0.24 deleterious(0.02) benign(0.023) TCGA-90-7766-01 11 66453560 66453560 A T SPTBN2 Missense_Mutation p.W2319R 0.37 deleterious(0) probably_damaging(0.981) TCGA-90-7766-01 11 7507071 7507071 C T OLFML1 5'UTR 0.27 TCGA-90-7766-01 11 7817614 7817614 C A OR5P2 Missense_Mutation p.E292D 0.25 tolerated(0.28) benign(0.063) TCGA-90-7766-01 11 8707091 8707091 C T RPL27A Intron 0.30 TCGA-90-7766-01 12 6857962 6857962 C G MLF2 Nonstop_Mutation p.*249Sext*12 0.22 TCGA-90-7766-01 13 32813437 32813437 T C FRY Missense_Mutation p.F2156S 0.40 deleterious(0) probably_damaging(1) TCGA-90-7766-01 14 105239423 105239423 C T AKT1 Missense_Mutation p.E322K 0.32 tolerated(0.07) benign(0.262) TCGA-90-7766-01 14 105834825 105834825 G T PACS2 Silent p.G230G 0.31 TCGA-90-7766-01 14 106329414 106329414 A C IGHJ6 Missense_Mutation p.S19A 0.23 benign(0) TCGA-90-7766-01 14 20666117 20666117 G T OR11G2 Missense_Mutation p.G208V 0.37 deleterious(0) probably_damaging(0.993) TCGA-90-7766-01 14 45564585 45564585 C T PRPF39 Missense_Mutation p.S48F 0.46 deleterious(0.04) possibly_damaging(0.878) TCGA-90-7766-01 15 25296668 25296668 G A SNORD116-1 RNA 0.22 TCGA-90-7766-01 15 34105737 34105761 GTGGTGGCCTGTTTCAGGATGGCCC - RYR3 Frame_Shift_Del p.V3487Lfs*23 0.14 TCGA-90-7766-01 15 40589771 40589771 C T PLCB2 Missense_Mutation p.R425Q 0.23 deleterious(0.01) probably_damaging(0.945) TCGA-90-7766-01 15 64966580 64966580 C T ZNF609 Silent p.I509I 0.28 TCGA-90-7766-01 16 20043159 20043159 G A GPR139 Silent p.S320S 0.31 TCGA-90-7766-01 16 20043160 20043160 G T GPR139 Missense_Mutation p.S320Y 0.32 deleterious(0) probably_damaging(0.991) TCGA-90-7766-01 16 3614744 3614744 C A NLRC3 Missense_Mutation p.R112M 0.39 deleterious(0) possibly_damaging(0.687) TCGA-90-7766-01 16 48172166 48172166 C A ABCC12 Nonsense_Mutation p.E318* 0.29 TCGA-90-7766-01 16 88744940 88744940 G A SNAI3 Silent p.Y265Y 0.15 TCGA-90-7766-01 17 16004874 16004874 C T NCOR1 Missense_Mutation p.E794K 0.17 benign(0.114) TCGA-90-7766-01 17 29622913 29622913 C G OMG Missense_Mutation p.R146T 0.35 tolerated(0.9) benign(0.008) TCGA-90-7766-01 17 75190891 75190891 T C SEC14L1 Missense_Mutation p.S203P 0.23 tolerated(0.11) possibly_damaging(0.576) TCGA-90-7766-01 17 7577534 7577534 C A TP53 Missense_Mutation p.R249S 0.29 deleterious(0) probably_damaging(0.994) TCGA-90-7766-01 17 77807749 77807749 G A CBX4 3'UTR 0.22 TCGA-90-7766-01 18 33077756 33077756 G T INO80C Missense_Mutation p.S28Y 0.20 deleterious_low_confidence(0) benign(0.177) TCGA-90-7766-01 18 43702483 43702483 A G HAUS1 Missense_Mutation p.D176G 0.19 deleterious(0.05) benign(0.281) TCGA-90-7766-01 19 37130083 37130083 C T ZNF461 Silent p.R388R 0.25 TCGA-90-7766-01 19 39963513 39963513 G T SUPT5H Missense_Mutation p.R700L 0.24 deleterious(0.01) possibly_damaging(0.597) TCGA-90-7766-01 19 41120272 41120272 G T LTBP4 Missense_Mutation p.C978F 0.12 deleterious(0) probably_damaging(0.976) TCGA-90-7766-01 19 4362618 4362619 - G SH3GL1 Frame_Shift_Ins p.K282Qfs*19 0.12 TCGA-90-7766-01 19 44933282 44933282 G A ZNF229 Silent p.D558D 0.25 TCGA-90-7766-01 19 55349213 55349213 T A KIR2DS4 Missense_Mutation p.F85I 0.52 deleterious_low_confidence(0.02) probably_damaging(0.967) TCGA-90-7766-01 19 57640433 57640433 C T USP29 Silent p.D130D 0.28 TCGA-90-7766-01 1 111784859 111784859 T A CHI3L2 Nonsense_Mutation p.L349* 0.24 TCGA-90-7766-01 1 145474304 145474304 C A ANKRD34A Missense_Mutation p.P326T 0.20 tolerated(0.2) benign(0) TCGA-90-7766-01 1 153042972 153042972 G C SPRR2B 3'UTR 0.22 TCGA-90-7766-01 1 155221383 155221383 G A FAM189B Silent p.Y268Y 0.26 TCGA-90-7766-01 1 158151364 158151364 G T CD1D Missense_Mutation p.D61Y 0.27 deleterious(0.02) possibly_damaging(0.891) TCGA-90-7766-01 1 160213779 160213779 C T DCAF8 Missense_Mutation p.S7N 0.28 tolerated_low_confidence(0.1) benign(0.007) TCGA-90-7766-01 1 176563853 176563853 C T PAPPA2 Silent p.Y371Y 0.27 TCGA-90-7766-01 1 197169138 197169139 GT - ZBTB41 Frame_Shift_Del p.P156Sfs*20 0.22 TCGA-90-7766-01 1 214170946 214170946 G C PROX1 Silent p.L356L 0.21 TCGA-90-7766-01 1 217793555 217793555 T C GPATCH2 Missense_Mutation p.S115G 0.22 deleterious(0) probably_damaging(0.995) TCGA-90-7766-01 1 217842390 217842390 A C SPATA17 Missense_Mutation p.M86L 0.31 deleterious(0.01) possibly_damaging(0.596) TCGA-90-7766-01 1 248224371 248224371 C T OR2L3 Missense_Mutation p.H130Y 0.26 deleterious(0.03) benign(0.056) TCGA-90-7766-01 1 74905306 74905306 G T TNNI3K Missense_Mutation p.A772S 0.19 tolerated(0.18) benign(0.026) TCGA-90-7766-01 1 74905307 74905307 G T TNNI3K Splice_Site p.X772_splice 0.20 TCGA-90-7766-01 20 23345048 23345048 T C GZF1 Missense_Mutation p.S10P 0.25 deleterious(0) probably_damaging(0.999) TCGA-90-7766-01 20 29978249 29978249 G C DEFB119 Missense_Mutation p.A13G 0.27 tolerated(0.12) unknown(0) TCGA-90-7766-01 20 62292734 62292734 C T RTEL1 Silent p.H62H 0.22 TCGA-90-7766-01 20 62858781 62858781 G A MYT1 Missense_Mutation p.G848S 0.14 possibly_damaging(0.872) TCGA-90-7766-01 21 31986134 31986134 C A KRTAP6-1 Silent p.L30L 0.31 TCGA-90-7766-01 22 26854460 26854460 G T HPS4 Missense_Mutation p.S599R 0.25 tolerated(0.51) benign(0.011) TCGA-90-7766-01 22 30891912 30891912 T C SEC14L4 Intron 0.41 TCGA-90-7766-01 22 46614220 46614220 A G PPARA Missense_Mutation p.K144E 0.24 deleterious(0.01) possibly_damaging(0.7) TCGA-90-7766-01 2 128628921 128628921 C T AMMECR1L Silent p.V140V 0.09 TCGA-90-7766-01 2 152376272 152376272 C T NEB Missense_Mutation p.R7497Q 0.24 possibly_damaging(0.641) TCGA-90-7766-01 2 165584495 165584495 C A COBLL1 Silent p.A215A 0.31 TCGA-90-7766-01 2 170090016 170090016 G T LRP2 Missense_Mutation p.A1668D 0.32 probably_damaging(0.98) TCGA-90-7766-01 2 179458379 179458379 A G TTN Missense_Mutation p.Y19550H 0.32 TCGA-90-7766-01 2 179583062 179583062 C A TTN Silent p.L8257L 0.26 TCGA-90-7766-01 2 179603912 179603912 C T TTN Missense_Mutation p.S4683N 0.32 TCGA-90-7766-01 2 179613593 179613593 A G TTN Intron 0.19 TCGA-90-7766-01 2 196664094 196664094 A G DNAH7 Missense_Mutation p.C3427R 0.25 deleterious(0) possibly_damaging(0.857) TCGA-90-7766-01 2 201354764 201354764 C T KCTD18 3'UTR 0.28 TCGA-90-7766-01 2 204013866 204013866 T - NBEAL1 Frame_Shift_Del p.R1792Gfs*10 0.23 TCGA-90-7766-01 2 212495320 212495320 C G ERBB4 Splice_Site p.X649_splice 0.32 TCGA-90-7766-01 2 228497777 228497778 - A C2orf83 Frame_Shift_Ins p.G9Wfs*3 0.23 TCGA-90-7766-01 2 233396347 233396347 T C CHRND Missense_Mutation p.L343P 0.29 deleterious(0) probably_damaging(0.987) TCGA-90-7766-01 2 62106013 62106013 C A CCT4 Silent p.L171L 0.10 TCGA-90-7766-01 3 108363557 108363557 A G DZIP3 Missense_Mutation p.H563R 0.47 tolerated_low_confidence(0.1) probably_damaging(0.996) TCGA-90-7766-01 3 113304073 113304073 C G SIDT1 Silent p.S319S 0.33 TCGA-90-7766-01 3 113304078 113304078 A T SIDT1 Missense_Mutation p.Y321F 0.33 deleterious(0.04) possibly_damaging(0.582) TCGA-90-7766-01 3 140866079 140866079 C T SPSB4 Nonsense_Mutation p.Q264* 0.28 TCGA-90-7766-01 3 150176430 150176430 C A TSC22D2 3'UTR 0.28 TCGA-90-7766-01 3 165547327 165547328 - C BCHE Frame_Shift_Ins p.W499Vfs*12 0.28 TCGA-90-7766-01 3 169656130 169656130 T C SAMD7 Missense_Mutation p.F393L 0.37 tolerated(0.3) benign(0.007) TCGA-90-7766-01 3 95374239 95374239 G T MTHFD2P1 RNA 0.42 TCGA-90-7766-01 4 144135082 144135082 C T USP38 Silent p.P651P 0.29 TCGA-90-7766-01 4 189068372 189068372 T C TRIML1 Missense_Mutation p.I418T 0.35 deleterious(0.02) probably_damaging(0.999) TCGA-90-7766-01 5 100231463 100231463 G A ST8SIA4 Missense_Mutation p.S47L 0.38 benign(0) TCGA-90-7766-01 5 31449467 31449467 C A DROSHA Missense_Mutation p.R914S 0.59 deleterious(0) possibly_damaging(0.838) TCGA-90-7766-01 5 434620 434620 C T AHRR Missense_Mutation p.H611Y 0.23 tolerated(0.29) benign(0.011) TCGA-90-7766-01 6 112512886 112512886 A G LAMA4 Missense_Mutation p.C224R 0.31 deleterious(0.01) probably_damaging(1) TCGA-90-7766-01 6 117116951 117116951 C G GPRC6A Missense_Mutation p.K532N 0.34 deleterious(0) probably_damaging(0.999) TCGA-90-7766-01 6 117246718 117246718 A T RFX6 Missense_Mutation p.H594L 0.23 tolerated(0.77) benign(0) TCGA-90-7766-01 6 119501082 119501082 C A MAN1A1 Missense_Mutation p.D622Y 0.28 deleterious(0) probably_damaging(0.998) TCGA-90-7766-01 6 160328361 160328361 C T MAS1 Missense_Mutation p.A125V 0.27 tolerated(0.09) probably_damaging(0.951) TCGA-90-7766-01 6 160863867 160863867 T A SLC22A3 Missense_Mutation p.L455M 0.25 deleterious(0) probably_damaging(0.996) TCGA-90-7766-01 6 30673022 30673022 C T MDC1 Missense_Mutation p.R1313K 0.22 deleterious(0.04) benign(0) TCGA-90-7766-01 6 31084644 31084644 G T CDSN Missense_Mutation p.Q250K 0.46 tolerated_low_confidence(0.56) unknown(0) TCGA-90-7766-01 6 51890469 51890469 A G PKHD1 Missense_Mutation p.V1380A 0.46 tolerated(1) benign(0) TCGA-90-7766-01 6 70071174 70071174 C T BAI3 Missense_Mutation p.H1337Y 0.30 deleterious(0.03) benign(0.057) TCGA-90-7766-01 6 82882120 82882120 C T IBTK Missense_Mutation p.E1303K 0.29 deleterious(0.01) possibly_damaging(0.881) TCGA-90-7766-01 6 96651686 96651686 G A FUT9 Missense_Mutation p.G219R 0.19 deleterious(0) probably_damaging(0.999) TCGA-90-7766-01 7 100865924 100865924 G T ZNHIT1 Missense_Mutation p.R21L 0.35 tolerated(0.09) benign(0.003) TCGA-90-7766-01 7 121650515 121650515 C T PTPRZ1 Missense_Mutation p.T472M 0.25 deleterious(0) probably_damaging(0.912) TCGA-90-7766-01 7 31378578 31378578 C T NEUROD6 Missense_Mutation p.R102H 0.26 deleterious(0) probably_damaging(0.954) TCGA-90-7766-01 7 53103417 53103417 C T POM121L12 Missense_Mutation p.A18V 0.17 tolerated_low_confidence(0.14) possibly_damaging(0.873) TCGA-90-7766-01 7 6013085 6013085 T G PMS2 Missense_Mutation p.H845P 0.14 deleterious(0) probably_damaging(0.999) TCGA-90-7766-01 7 99473683 99473683 C A OR2AE1 3'UTR 0.23 TCGA-90-7766-01 8 71053574 71053574 C T NCOA2 Missense_Mutation p.S958N 0.32 tolerated(0.39) benign(0.001) TCGA-90-7766-01 8 86573782 86573782 G T REXO1L1P Missense_Mutation p.L649M 0.09 deleterious(0) probably_damaging(1) TCGA-90-7766-01 9 88162142 88162142 C T AGTPBP1 Missense_Mutation p.S1148N 0.11 tolerated(0.18) probably_damaging(0.978) TCGA-90-7766-01 9 95179350 95179350 A G OMD Missense_Mutation p.L164P 0.20 deleterious(0) probably_damaging(0.996) TCGA-90-7766-01 X 10417419 10417419 G T MID1 Missense_Mutation p.Q665K 0.17 tolerated_low_confidence(0.06) benign(0.103) TCGA-90-7766-01 X 115303945 115303945 A G AGTR2 Missense_Mutation p.M138V 0.27 deleterious(0.01) probably_damaging(0.93) TCGA-90-7766-01 X 122757808 122757808 G T THOC2 Nonsense_Mutation p.C1111* 0.19 TCGA-90-7766-01 X 135738572 135738572 C G CD40LG Missense_Mutation p.T135R 0.23 tolerated(0.17) benign(0.047) TCGA-90-7766-01 X 139587140 139587140 G T SOX3 Missense_Mutation p.P29H 0.43 deleterious_low_confidence(0) possibly_damaging(0.478) TCGA-90-7766-01 X 139865673 139865673 G C CDR1 3'UTR 0.14 TCGA-90-7766-01 X 144906059 144906059 G A SLITRK2 Missense_Mutation p.G706R 0.31 tolerated(0.09) possibly_damaging(0.873) TCGA-90-7766-01 X 144906060 144906060 G T SLITRK2 Missense_Mutation p.G706V 0.31 tolerated(0.07) possibly_damaging(0.873) TCGA-90-7766-01 X 145109352 145109352 T C MIR891A RNA 0.14 TCGA-90-7766-01 X 150349254 150349254 C T GPR50 Missense_Mutation p.A400V 0.21 tolerated_low_confidence(0.2) benign(0.004) TCGA-90-7766-01 X 150780153 150780153 G A PASD1 Missense_Mutation p.M45I 0.25 deleterious(0.01) possibly_damaging(0.84) TCGA-90-7766-01 X 154736655 154736655 T A TMLHE Missense_Mutation p.E300V 0.04 deleterious(0) probably_damaging(0.974) TCGA-90-7766-01 X 1571723 1571723 C A ASMTL Missense_Mutation p.C4F 0.36 tolerated(0.1) benign(0.231) TCGA-90-7766-01 X 23929937 23929937 G T CXorf58 Missense_Mutation p.M60I 0.23 tolerated(0.29) benign(0.016) TCGA-90-7766-01 X 30873657 30873657 C G TAB3 Missense_Mutation p.C42S 0.35 deleterious(0) probably_damaging(0.996) TCGA-90-7766-01 X 37655326 37655326 T G CYBB Missense_Mutation p.F202L 0.23 deleterious(0) possibly_damaging(0.897) TCGA-90-7766-01 X 55046805 55046805 G C ALAS2 Silent p.S257S 0.36 TCGA-90-7766-01 X 70832326 70832326 C A ACRC Missense_Mutation p.H624Q 0.15 unknown(0) TCGA-90-7766-01 X 71887239 71887239 C T PHKA1 Missense_Mutation p.V235I 0.26 tolerated(0.86) benign(0.012) TCGA-90-7767-01 10 11299705 11299705 G A CELF2 Silent p.V136V 0.22 TCGA-90-7767-01 10 118713658 118713658 C G KIAA1598 Missense_Mutation p.D111H 0.17 deleterious(0) possibly_damaging(0.812) TCGA-90-7767-01 10 13323063 13323063 C G PHYH Silent p.V292V 0.40 TCGA-90-7767-01 10 17865236 17865236 G T MRC1L1 Silent p.L75L 0.37 TCGA-90-7767-01 10 22690126 22690126 A T SPAG6 Missense_Mutation p.T412S 0.17 tolerated(0.13) possibly_damaging(0.533) TCGA-90-7767-01 10 27057825 27057825 A G ABI1 Silent p.S225S 0.24 TCGA-90-7767-01 10 50955250 50955250 G T OGDHL Missense_Mutation p.S331Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-90-7767-01 10 53458370 53458370 T C CSTF2T Missense_Mutation p.I314V 0.41 tolerated(0.41) benign(0.01) TCGA-90-7767-01 10 84718731 84718731 A T NRG3 Missense_Mutation p.Q395L 0.16 tolerated(0.06) benign(0.015) TCGA-90-7767-01 11 121023705 121023705 C T TECTA Silent p.H1407H 0.14 TCGA-90-7767-01 11 12315266 12315266 G A MICALCL Silent p.V96V 0.19 TCGA-90-7767-01 11 123847403 123847403 C T OR10S1 Silent p.%3D 0.24 TCGA-90-7767-01 11 124266500 124266500 G T OR8B3 Missense_Mutation p.L250M 0.24 deleterious_low_confidence(0.03) possibly_damaging(0.806) TCGA-90-7767-01 11 124489542 124489542 G T PANX3 Missense_Mutation p.W297L 0.23 deleterious(0.04) probably_damaging(0.99) TCGA-90-7767-01 11 48267344 48267344 C T OR4X2 Missense_Mutation p.S230F 0.19 deleterious(0) probably_damaging(1) TCGA-90-7767-01 11 65320942 65320942 G A LTBP3 Silent p.G308G 0.33 TCGA-90-7767-01 11 65562663 65562663 G A OVOL1 Missense_Mutation p.G219S 0.26 deleterious(0) benign(0.377) TCGA-90-7767-01 11 7530857 7530857 C A OLFML1 Missense_Mutation p.T216K 0.12 deleterious(0) possibly_damaging(0.486) TCGA-90-7767-01 11 77930308 77930308 G A GAB2 3'UTR 0.24 TCGA-90-7767-01 12 10133225 10133225 G T CLEC12A Missense_Mutation p.D152Y 0.23 deleterious(0) probably_damaging(0.992) TCGA-90-7767-01 12 124497440 124497440 C A ZNF664 Missense_Mutation p.T250K 0.20 deleterious(0.02) possibly_damaging(0.58) TCGA-90-7767-01 12 77423616 77423616 G A E2F7 Missense_Mutation p.P627S 0.18 tolerated(0.09) benign(0.248) TCGA-90-7767-01 12 97098571 97098571 A G C12orf55 Missense_Mutation p.I2175M 0.56 tolerated(0.18) possibly_damaging(0.551) TCGA-90-7767-01 13 53418759 53418759 G T PCDH8 Missense_Mutation p.P1050H 0.43 deleterious(0) probably_damaging(0.999) TCGA-90-7767-01 13 75898458 75898458 C T TBC1D4 Missense_Mutation p.A705T 0.31 tolerated(0.6) benign(0.089) TCGA-90-7767-01 14 102605665 102605665 C A HSP90AA1 Missense_Mutation p.S26I 0.18 unknown(0) TCGA-90-7767-01 14 20711764 20711764 C A OR11H4 Missense_Mutation p.P272T 0.25 deleterious(0) probably_damaging(1) TCGA-90-7767-01 14 24535653 24535653 G T LRRC16B Missense_Mutation p.R1191L 0.20 deleterious(0.01) unknown(0) TCGA-90-7767-01 14 93282716 93282716 G T GOLGA5 Nonsense_Mutation p.E481* 0.27 TCGA-90-7767-01 14 99866486 99866486 G A SETD3 Missense_Mutation p.L430F 0.27 tolerated(0.09) possibly_damaging(0.856) TCGA-90-7767-01 15 34445154 34445154 C T KATNBL1 Missense_Mutation p.S92N 0.54 tolerated(0.41) benign(0.063) TCGA-90-7767-01 15 35044739 35044739 C A GJD2 Silent p.L302L 0.45 TCGA-90-7767-01 15 35084458 35084458 A G ACTC1 Missense_Mutation p.I214T 0.42 deleterious_low_confidence(0) possibly_damaging(0.544) TCGA-90-7767-01 15 62161724 62161724 T G VPS13C Missense_Mutation p.S3575R 0.56 deleterious(0) probably_damaging(0.998) TCGA-90-7767-01 15 85399716 85399716 G T ALPK3 Missense_Mutation p.G785C 0.58 deleterious_low_confidence(0.03) benign(0.086) TCGA-90-7767-01 16 1584250 1584250 G A TMEM204 5'UTR 0.30 TCGA-90-7767-01 16 24963632 24963632 C T ARHGAP17 Missense_Mutation p.E342K 0.23 deleterious(0.04) possibly_damaging(0.798) TCGA-90-7767-01 16 74514164 74514164 T A GLG1 Missense_Mutation p.Y601F 0.25 tolerated(0.06) benign(0.271) TCGA-90-7767-01 17 10408498 10408498 T G MYH1 Missense_Mutation p.Q806P 0.55 deleterious(0.01) benign(0.04) TCGA-90-7767-01 17 1634405 1634405 G A WDR81 Missense_Mutation p.R1337H 0.09 deleterious(0.01) probably_damaging(1) TCGA-90-7767-01 17 32964693 32964693 C A TMEM132E Silent p.I799I 0.37 TCGA-90-7767-01 17 33434385 33434385 C T RAD51D Silent p.Q135Q 0.29 TCGA-90-7767-01 17 42390871 42390871 G A RUNDC3A Missense_Mutation p.R153K 0.36 tolerated(0.09) benign(0.024) TCGA-90-7767-01 17 45696435 45696435 C T NPEPPS Missense_Mutation p.H822Y 0.30 tolerated(0.05) benign(0.001) TCGA-90-7767-01 17 56344819 56344819 C A LPO Nonsense_Mutation p.Y601* 0.46 TCGA-90-7767-01 17 59971162 59971162 C T INTS2 Silent p.R562R 0.19 TCGA-90-7767-01 17 61601505 61601505 A T KCNH6 Nonsense_Mutation p.K28* 0.31 TCGA-90-7767-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.50 deleterious(0) probably_damaging(1) TCGA-90-7767-01 17 8011838 8011838 C A ALOXE3 Missense_Mutation p.Q676H 0.38 deleterious(0) probably_damaging(1) TCGA-90-7767-01 18 13387585 13387585 C A LDLRAD4 5'UTR 0.52 TCGA-90-7767-01 18 74153369 74153369 C G ZNF516 Missense_Mutation p.G548R 0.75 deleterious(0) possibly_damaging(0.782) TCGA-90-7767-01 19 10169330 10169330 G A C3P1 RNA 0.61 TCGA-90-7767-01 19 18642985 18642985 C T FKBP8 Silent p.R412R 0.73 TCGA-90-7767-01 19 2414001 2414001 G A TMPRSS9 Missense_Mutation p.V486I 0.21 tolerated(0.08) benign(0.002) TCGA-90-7767-01 19 37880603 37880603 A G ZNF527 Missense_Mutation p.E551G 0.63 deleterious(0) probably_damaging(1) TCGA-90-7767-01 19 52031040 52031040 G T SIGLEC6 Missense_Mutation p.N383K 0.58 tolerated(0.16) benign(0.003) TCGA-90-7767-01 19 53572724 53572724 T A ZNF160 Missense_Mutation p.N355Y 0.53 tolerated(1) possibly_damaging(0.564) TCGA-90-7767-01 19 53572730 53572730 G A ZNF160 Missense_Mutation p.H353Y 0.53 tolerated(0.39) benign(0.158) TCGA-90-7767-01 19 55048152 55048152 T C KIR3DX1 Missense_Mutation p.L240S 0.58 deleterious(0) possibly_damaging(0.871) TCGA-90-7767-01 19 56104111 56104111 G A FIZ1 Missense_Mutation p.A399V 0.18 tolerated(0.14) benign(0.002) TCGA-90-7767-01 19 971897 971897 G A ARID3A Silent p.P538P 0.61 TCGA-90-7767-01 1 12030766 12030766 A G PLOD1 Missense_Mutation p.I599V 0.48 tolerated(1) benign(0.015) TCGA-90-7767-01 1 155106065 155106065 G A EFNA1 Intron 0.17 TCGA-90-7767-01 1 155172126 155172126 C T THBS3 Missense_Mutation p.E342K 0.38 tolerated(0.17) possibly_damaging(0.507) TCGA-90-7767-01 1 158725274 158725274 G T OR6K6 Silent p.V223V 0.46 TCGA-90-7767-01 1 158725275 158725275 G T OR6K6 Missense_Mutation p.V224F 0.45 tolerated(0.08) benign(0.038) TCGA-90-7767-01 1 161010448 161010586 1:161010448-161010586 TGGCGAGTTTTCACTGAG USF1 Splice_Site p.X211_splice 0.19 TCGA-90-7767-01 1 161161350 161161350 C T ADAMTS4 Missense_Mutation p.G698R 0.24 deleterious(0) probably_damaging(1) TCGA-90-7767-01 1 174241581 174241581 G A RABGAP1L Missense_Mutation p.R339Q 0.26 tolerated(0.12) possibly_damaging(0.668) TCGA-90-7767-01 1 176564616 176564616 G T PAPPA2 Missense_Mutation p.G626W 0.35 deleterious(0) probably_damaging(0.994) TCGA-90-7767-01 1 185833650 185833650 T C HMCN1 Silent p.L130L 0.30 TCGA-90-7767-01 1 193065729 193065729 T C GLRX2 3'UTR 0.41 TCGA-90-7767-01 1 196963239 196963239 G C CFHR5 Missense_Mutation p.A154P 0.40 tolerated(0.37) benign(0.012) TCGA-90-7767-01 1 211307258 211307258 T C KCNH1 Silent p.L10L 0.43 TCGA-90-7767-01 1 236918469 236918469 G T ACTN2 Missense_Mutation p.D709Y 0.33 deleterious(0.02) probably_damaging(1) TCGA-90-7767-01 1 246704488 246704488 C T TFB2M Missense_Mutation p.D346N 0.19 tolerated(0.4) possibly_damaging(0.824) TCGA-90-7767-01 1 45484528 45484528 C A ZSWIM5 Silent p.L1052L 0.49 TCGA-90-7767-01 1 54605671 54605671 G A CDCP2 Missense_Mutation p.P291L 0.35 deleterious(0.05) benign(0.075) TCGA-90-7767-01 1 86355270 86355270 T A COL24A1 Silent p.T983T 0.53 TCGA-90-7767-01 20 4155740 4155740 A T SMOX Missense_Mutation p.D13V 0.26 deleterious(0) possibly_damaging(0.851) TCGA-90-7767-01 20 44515591 44515591 C T SPATA25 Silent p.R83R 0.15 TCGA-90-7767-01 20 46254213 46254213 G T NCOA3 Silent p.P115P 0.43 TCGA-90-7767-01 21 11047583 11047583 T A BAGE2 RNA 0.06 TCGA-90-7767-01 21 33678968 33678968 T C MRAP Missense_Mutation p.F42L 0.18 tolerated(0.08) benign(0.004) TCGA-90-7767-01 22 23237736 23237736 G T IGLL5 Missense_Mutation p.Q169H 0.45 deleterious_low_confidence(0) possibly_damaging(0.877) TCGA-90-7767-01 22 24580899 24580899 C - SUSD2 Frame_Shift_Del p.A258Efs*20 0.21 TCGA-90-7767-01 22 39414411 39414411 A G APOBEC3C 3'UTR 0.17 TCGA-90-7767-01 22 41753272 41753272 G T ZC3H7B Missense_Mutation p.V925L 0.19 tolerated(0.29) benign(0.261) TCGA-90-7767-01 22 46932373 46932373 C A CELSR1 Missense_Mutation p.R232L 0.36 deleterious(0.03) benign(0.25) TCGA-90-7767-01 2 135738348 135738348 T A MAP3K19 Intron 0.17 TCGA-90-7767-01 2 136567190 136567190 C A LCT Missense_Mutation p.W909C 0.52 deleterious(0) probably_damaging(1) TCGA-90-7767-01 2 16742476 16742476 G C FAM49A Missense_Mutation p.P195A 0.36 deleterious(0.01) probably_damaging(0.992) TCGA-90-7767-01 2 178096522 178096522 G A NFE2L2 Missense_Mutation p.S270L 0.31 tolerated(0.08) benign(0.033) TCGA-90-7767-01 2 208841843 208841843 G C PLEKHM3 Missense_Mutation p.Q360E 0.35 tolerated(0.28) benign(0.002) TCGA-90-7767-01 2 211542759 211542759 A T CPS1 3'UTR 0.15 TCGA-90-7767-01 2 32477722 32477722 C T NLRC4 Missense_Mutation p.A10T 0.14 tolerated(0.56) benign(0.007) TCGA-90-7767-01 2 37255916 37255916 T C HEATR5B Missense_Mutation p.H1170R 0.19 tolerated(0.59) benign(0.001) TCGA-90-7767-01 2 43927434 43927434 T C PLEKHH2 Missense_Mutation p.V446A 0.18 tolerated(0.43) benign(0) TCGA-90-7767-01 2 74043856 74043856 C T C2orf78 Missense_Mutation p.R836W 0.12 deleterious(0.05) possibly_damaging(0.471) TCGA-90-7767-01 3 123427714 123427714 C A MYLK Silent p.L657L 0.39 TCGA-90-7767-01 3 19924196 19924196 A G EFHB Missense_Mutation p.I725T 0.37 deleterious(0) benign(0.314) TCGA-90-7767-01 3 52485303 52485303 C T TNNC1 Silent p.K158K 0.20 TCGA-90-7767-01 4 106290859 106290859 C G PPA2 3'UTR 0.28 TCGA-90-7767-01 4 123258080 123258080 G C KIAA1109 Missense_Mutation p.D4019H 0.24 possibly_damaging(0.707) TCGA-90-7767-01 4 151168794 151168794 G C DCLK2 Missense_Mutation p.L623F 0.06 deleterious(0) probably_damaging(0.981) TCGA-90-7767-01 4 70074136 70074136 A T UGT2B11 Missense_Mutation p.V312E 0.35 deleterious(0) benign(0.015) TCGA-90-7767-01 4 70455156 70455156 G A UGT2A1 Silent p.V672V 0.16 TCGA-90-7767-01 4 71201847 71201847 C A CABS1 Missense_Mutation p.S364Y 0.30 deleterious(0) benign(0.1) TCGA-90-7767-01 5 140531926 140531926 G A PCDHB6 Silent p.S696S 0.24 TCGA-90-7767-01 5 150946044 150946045 - GTTG FAT2 Frame_Shift_Ins p.A817Qfs*33 0.42 TCGA-90-7767-01 5 156378590 156378590 G A TIMD4 Silent p.T204T 0.42 TCGA-90-7767-01 5 24509682 24509682 G T CDH10 Missense_Mutation p.P417T 0.32 tolerated(0.08) benign(0.098) TCGA-90-7767-01 5 33458700 33458700 C T TARS Silent p.L371L 0.39 TCGA-90-7767-01 5 35697857 35697857 T - SPEF2 Frame_Shift_Del p.D702Mfs*8 0.23 TCGA-90-7767-01 5 7875449 7875449 G A MTRR Missense_Mutation p.R148Q 0.45 tolerated(1) benign(0.008) TCGA-90-7767-01 5 82937554 82937554 C A HAPLN1 Missense_Mutation p.V276L 0.55 tolerated(0.26) benign(0.073) TCGA-90-7767-01 6 105800933 105800933 T A PREP Missense_Mutation p.Y246F 0.25 tolerated(0.08) benign(0.419) TCGA-90-7767-01 6 121412138 121412138 A G TBC1D32 Missense_Mutation p.I1172T 0.41 tolerated(1) benign(0.007) TCGA-90-7767-01 6 146755362 146755362 C A GRM1 Silent p.A1005A 0.47 TCGA-90-7767-01 6 31929046 31929046 C T SKIV2L Silent p.D224D 0.25 TCGA-90-7767-01 6 32011566 32011566 G T TNXB Silent p.G259G 0.56 TCGA-90-7767-01 6 43250584 43250584 C T TTBK1 Silent p.L702L 0.59 TCGA-90-7767-01 6 46832820 46832820 T C GPR116 Missense_Mutation p.N650S 0.50 tolerated(0.59) benign(0.001) TCGA-90-7767-01 7 103053448 103053448 C A SLC26A5 Splice_Site p.X135_splice 0.31 TCGA-90-7767-01 7 156476842 156476842 T C LMBR1 Missense_Mutation p.H468R 0.28 tolerated(0.68) benign(0.055) TCGA-90-7767-01 7 81355275 81355275 T A HGF Missense_Mutation p.T367S 0.44 deleterious(0) probably_damaging(0.999) TCGA-90-7767-01 8 10469901 10469901 G T RP1L1 Missense_Mutation p.S569R 0.44 possibly_damaging(0.656) TCGA-90-7767-01 8 110471843 110471843 G A PKHD1L1 Missense_Mutation p.E2342K 0.38 deleterious(0) possibly_damaging(0.788) TCGA-90-7767-01 8 113569167 113569167 G A CSMD3 Silent p.H1353H 0.33 TCGA-90-7767-01 8 2824247 2824247 C G CSMD1 Missense_Mutation p.G2982A 0.50 probably_damaging(0.991) TCGA-90-7767-01 8 2886904 2886904 T C CSMD1 Missense_Mutation p.R2598G 0.56 possibly_damaging(0.824) TCGA-90-7767-01 8 56663520 56663520 C T TMEM68 Intron 0.28 TCGA-90-7767-01 8 93029624 93029624 C A RUNX1T1 Intron 0.25 TCGA-90-7767-01 8 94808212 94808212 G A TMEM67 Silent p.L619L 0.24 TCGA-90-7767-01 9 119976861 119976861 G A ASTN2 Missense_Mutation p.A264V 0.29 deleterious_low_confidence(0.01) unknown(0) TCGA-90-7767-01 9 120053760 120053760 C T ASTN2 Missense_Mutation p.V159M 0.12 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-90-7767-01 X 140996179 140996179 A T MAGEC1 Missense_Mutation p.N997Y 0.67 deleterious(0) unknown(0) TCGA-90-7767-01 X 44929283 44929283 G A KDM6A Missense_Mutation p.G795R 0.30 deleterious(0.03) benign(0.04) TCGA-90-7767-01 X 73062754 73062754 G T XIST RNA 0.62 TCGA-90-7767-01 X 84363161 84363161 T C SATL1 Missense_Mutation p.N272D 0.68 tolerated(0.09) possibly_damaging(0.546) TCGA-90-7767-01 X 91132423 91132423 G T PCDH11X Missense_Mutation p.R395M 0.61 tolerated(0.07) benign(0.196) TCGA-90-7767-01 X 91132424 91132424 G T PCDH11X Missense_Mutation p.R395S 0.60 tolerated(0.12) possibly_damaging(0.507) TCGA-90-7769-01 10 100904072 100904073 - T HPSE2 Frame_Shift_Ins p.R178Kfs*22 0.40 TCGA-90-7769-01 10 101120718 101120718 G T CNNM1 Missense_Mutation p.R615L 0.42 deleterious(0) probably_damaging(0.998) TCGA-90-7769-01 10 102286213 102286213 C A NDUFB8 Silent p.L137L 0.60 TCGA-90-7769-01 10 114044405 114044405 C A TECTB Silent p.V63V 0.36 TCGA-90-7769-01 10 118100272 118100272 C T CCDC172 Silent p.F64F 0.67 TCGA-90-7769-01 10 118116994 118116994 G T CCDC172 Splice_Site p.X184_splice 0.78 TCGA-90-7769-01 10 12280458 12280458 G C CDC123 Missense_Mutation p.V231L 0.50 deleterious(0.01) possibly_damaging(0.893) TCGA-90-7769-01 10 129861389 129861389 G T PTPRE Missense_Mutation p.W223L 0.25 deleterious(0) probably_damaging(0.945) TCGA-90-7769-01 10 18276414 18276414 G A SLC39A12 Missense_Mutation p.G368D 0.71 deleterious(0) probably_damaging(1) TCGA-90-7769-01 10 25684934 25684934 A G GPR158 Missense_Mutation p.N368S 0.71 tolerated(0.74) benign(0.001) TCGA-90-7769-01 10 44053077 44053077 C A ZNF239 Missense_Mutation p.D151Y 0.71 tolerated(1) possibly_damaging(0.781) TCGA-90-7769-01 10 48414421 48414421 C T GDF2 Silent p.E149E 0.24 TCGA-90-7769-01 10 50952127 50952127 G T OGDHL Missense_Mutation p.P592T 0.27 deleterious(0.04) benign(0.005) TCGA-90-7769-01 10 68687888 68687888 G T LRRTM3 Missense_Mutation p.G405V 0.70 tolerated(0.35) benign(0) TCGA-90-7769-01 10 70182150 70182150 C A DNA2 Missense_Mutation p.E929D 0.26 tolerated(0.3) benign(0.018) TCGA-90-7769-01 10 99677335 99677335 G T CRTAC1 Missense_Mutation p.P213T 0.36 tolerated(0.24) benign(0.05) TCGA-90-7769-01 11 111779537 111779537 G T CRYAB Missense_Mutation p.P160H 0.29 deleterious(0) probably_damaging(0.964) TCGA-90-7769-01 11 113076889 113076889 G - NCAM1 Frame_Shift_Del p.V265Sfs*3 0.22 TCGA-90-7769-01 11 117073765 117073765 C - TAGLN Frame_Shift_Del p.E13Kfs*23 0.16 TCGA-90-7769-01 11 118076602 118076602 C G AMICA1 Missense_Mutation p.A177P 0.26 tolerated(0.05) probably_damaging(0.973) TCGA-90-7769-01 11 123676398 123676398 A T OR6M1 Silent p.S220S 0.24 TCGA-90-7769-01 11 123676743 123676743 C A OR6M1 Silent p.L105L 0.33 TCGA-90-7769-01 11 124007761 124007761 G T VWA5A Missense_Mutation p.Q555H 0.30 tolerated(0.06) benign(0.03) TCGA-90-7769-01 11 1264181 1264181 C A MUC5B Missense_Mutation p.T2024N 0.17 unknown(0) TCGA-90-7769-01 11 1264182 1264182 C A MUC5B Silent p.T2024T 0.18 TCGA-90-7769-01 11 1270406 1270406 C T MUC5B Missense_Mutation p.T4099M 0.16 unknown(0) TCGA-90-7769-01 11 1278842 1278842 G T MUC5B Missense_Mutation p.C5451F 0.69 unknown(0) TCGA-90-7769-01 11 14497371 14497371 C T COPB1 Missense_Mutation p.A526T 0.39 deleterious(0.02) probably_damaging(0.938) TCGA-90-7769-01 11 16812410 16812410 T A PLEKHA7 Missense_Mutation p.D996V 0.40 tolerated(0.43) benign(0.13) TCGA-90-7769-01 11 16823349 16823349 C G PLEKHA7 Missense_Mutation p.V725L 0.34 deleterious(0.05) possibly_damaging(0.606) TCGA-90-7769-01 11 20113810 20113810 G T NAV2 Missense_Mutation p.S1963I 0.37 deleterious(0.04) possibly_damaging(0.501) TCGA-90-7769-01 11 208890 208890 G T RIC8A Silent p.T12T 0.56 TCGA-90-7769-01 11 30034288 30034288 G T KCNA4 5'UTR 0.47 TCGA-90-7769-01 11 30925125 30925125 C A DCDC1 Missense_Mutation p.A1472S 0.36 deleterious(0.03) possibly_damaging(0.567) TCGA-90-7769-01 11 40136402 40136402 C A LRRC4C Missense_Mutation p.V481L 0.47 tolerated(0.47) benign(0.012) TCGA-90-7769-01 11 44931317 44931317 G T TSPAN18 Missense_Mutation p.R42L 0.31 deleterious(0.02) possibly_damaging(0.564) TCGA-90-7769-01 11 4608665 4608665 A G OR52I2 Missense_Mutation p.Y208C 0.10 deleterious(0) probably_damaging(1) TCGA-90-7769-01 11 4825646 4825646 C G OR52R1 5'Flank 0.33 TCGA-90-7769-01 11 48511070 48511070 G C OR4A47 Missense_Mutation p.M242I 0.32 tolerated_low_confidence(1) benign(0) TCGA-90-7769-01 11 49830138 49830142 CAGTG AGTT RP11-707M1.1 RNA 0.34 TCGA-90-7769-01 11 50003632 50003632 G T OR4C12 Missense_Mutation p.H136N 0.39 deleterious_low_confidence(0.03) benign(0.035) TCGA-90-7769-01 11 5475005 5475005 C T OR51I2 Missense_Mutation p.A96V 0.19 tolerated(0.08) benign(0.016) TCGA-90-7769-01 11 55111166 55111166 C A OR4A16 Missense_Mutation p.L164I 0.33 deleterious_low_confidence(0.01) probably_damaging(0.954) TCGA-90-7769-01 11 55563282 55563282 T A OR5D14 Missense_Mutation p.L84H 0.38 deleterious(0) probably_damaging(1) TCGA-90-7769-01 11 58125863 58125863 T C OR5B17 Missense_Mutation p.H227R 0.26 tolerated_low_confidence(0.55) benign(0.139) TCGA-90-7769-01 11 58190504 58190504 G T OR5B2 Silent p.P77P 0.35 TCGA-90-7769-01 11 58979006 58979006 A G MPEG1 Missense_Mutation p.C445R 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-90-7769-01 11 59344026 59344026 C A OSBP 3'UTR 0.26 TCGA-90-7769-01 11 64702499 64702499 G T GPHA2 Silent p.S84S 0.36 TCGA-90-7769-01 11 65793652 65793652 G A CATSPER1 Missense_Mutation p.H67Y 0.42 deleterious(0.01) benign(0.002) TCGA-90-7769-01 11 6623378 6623378 G T RRP8 Missense_Mutation p.P56H 0.27 tolerated_low_confidence(0.07) benign(0.003) TCGA-90-7769-01 11 6646553 6646553 T G DCHS1 Missense_Mutation p.Q2341P 0.27 deleterious(0.01) benign(0.167) TCGA-90-7769-01 11 70170534 70170534 C T PPFIA1 Silent p.L97L 0.23 TCGA-90-7769-01 11 70319179 70319179 G A SHANK2 Missense_Mutation p.P1783L 0.31 deleterious(0.01) possibly_damaging(0.908) TCGA-90-7769-01 11 73007677 73007677 G T P2RY6 Silent p.A38A 0.31 TCGA-90-7769-01 11 78413076 78413076 C A TENM4 Missense_Mutation p.D1528Y 0.30 deleterious(0.01) possibly_damaging(0.531) TCGA-90-7769-01 11 82880556 82880556 G T PCF11 Missense_Mutation p.G1060V 0.17 deleterious(0) probably_damaging(0.981) TCGA-90-7769-01 11 86519849 86519849 C A PRSS23 3'UTR 0.29 TCGA-90-7769-01 11 87013342 87013342 A G TMEM135 Missense_Mutation p.I186V 0.38 tolerated(0.37) benign(0.237) TCGA-90-7769-01 11 92087866 92087866 A G FAT3 Missense_Mutation p.N863S 0.27 benign(0.189) TCGA-90-7769-01 11 93819207 93819207 C T HEPHL1 Silent p.S644S 0.38 TCGA-90-7769-01 11 95712576 95712576 C - MAML2 Frame_Shift_Del p.A1003Qfs*2 0.40 TCGA-90-7769-01 11 96125468 96125468 G T JRKL 3'UTR 0.50 TCGA-90-7769-01 12 100774547 100774547 C T SLC17A8 Missense_Mutation p.T57M 0.20 tolerated(0.11) benign(0.004) TCGA-90-7769-01 12 101732038 101732038 T A UTP20 Missense_Mutation p.I1284K 0.22 tolerated(0.38) benign(0.01) TCGA-90-7769-01 12 101880623 101880623 T - SPIC 3'UTR 0.17 TCGA-90-7769-01 12 105151097 105151097 T A CHST11 Missense_Mutation p.L192Q 0.22 deleterious(0) probably_damaging(1) TCGA-90-7769-01 12 106826235 106826235 A G POLR3B Missense_Mutation p.N535S 0.34 tolerated(0.3) benign(0.001) TCGA-90-7769-01 12 106838369 106838369 G T POLR3B Splice_Site p.X695_splice 0.28 TCGA-90-7769-01 12 109629527 109629527 G A ACACB Missense_Mutation p.D752N 0.18 tolerated(0.11) benign(0.386) TCGA-90-7769-01 12 117603380 117603389 CAGCGAGTCT - FBXO21 Frame_Shift_Del p.D410Ifs*36 0.23 TCGA-90-7769-01 12 117728193 117728193 G A NOS1 Silent p.G297G 0.40 TCGA-90-7769-01 12 125465146 125465146 C A DHX37 Missense_Mutation p.V210L 0.29 tolerated(0.34) benign(0) TCGA-90-7769-01 12 12815020 12815020 G A GPR19 Silent p.F121F 0.28 TCGA-90-7769-01 12 133218294 133218294 C G POLE Missense_Mutation p.G1773R 0.19 tolerated(0.34) benign(0.126) TCGA-90-7769-01 12 14633996 14633996 G C ATF7IP Missense_Mutation p.V1053L 0.29 deleterious_low_confidence(0.01) unknown(0) TCGA-90-7769-01 12 2061649 2061649 G A DCP1B Missense_Mutation p.T486I 0.25 deleterious(0.02) benign(0.099) TCGA-90-7769-01 12 20801664 20801664 G A PDE3A Missense_Mutation p.A870T 0.22 deleterious(0) possibly_damaging(0.818) TCGA-90-7769-01 12 21175802 21175802 G C SLCO1B7 Missense_Mutation p.G120A 0.24 tolerated(0.06) benign(0.187) TCGA-90-7769-01 12 21370118 21370118 G T SLCO1B1 Missense_Mutation p.L521F 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-90-7769-01 12 21630861 21630861 G T RECQL Missense_Mutation p.A248E 0.56 deleterious(0.01) possibly_damaging(0.9) TCGA-90-7769-01 12 21997837 21997837 C A ABCC9 Missense_Mutation p.A1037S 0.46 tolerated(0.72) benign(0.004) TCGA-90-7769-01 12 250336 250336 C A IQSEC3 Missense_Mutation p.P680T 0.18 deleterious(0.02) probably_damaging(0.995) TCGA-90-7769-01 12 51122459 51122459 C T DIP2B Silent p.C1213C 0.14 TCGA-90-7769-01 12 51773296 51773296 G A GALNT6 Silent p.L90L 0.18 TCGA-90-7769-01 12 52056656 52056656 C A SCN8A Missense_Mutation p.P19T 0.16 tolerated(0.07) benign(0.039) TCGA-90-7769-01 12 53186029 53186029 C A KRT3 Missense_Mutation p.Q394H 0.29 deleterious(0.02) possibly_damaging(0.599) TCGA-90-7769-01 12 53777018 53777018 C T SP1 Silent p.A429A 0.17 TCGA-90-7769-01 12 63042225 63042225 C A PPM1H 3'UTR 0.67 TCGA-90-7769-01 12 63042226 63042226 C A PPM1H 3'UTR 0.66 TCGA-90-7769-01 12 6954874 6954874 C A GNB3 Missense_Mutation p.S275Y 0.24 deleterious(0) probably_damaging(1) TCGA-90-7769-01 12 80651629 80651629 C T OTOGL Missense_Mutation p.S570L 0.26 deleterious(0) probably_damaging(0.988) TCGA-90-7769-01 12 86373726 86373726 T C MGAT4C Missense_Mutation p.I260V 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-90-7769-01 12 91502432 91502432 C G LUM Missense_Mutation p.G109R 0.17 tolerated(0.33) benign(0.034) TCGA-90-7769-01 12 95416102 95416102 C A NR2C1 Missense_Mutation p.G572V 0.45 deleterious(0) probably_damaging(1) TCGA-90-7769-01 12 96389611 96389611 C A HAL Missense_Mutation p.W26C 0.62 deleterious_low_confidence(0.01) probably_damaging(0.947) TCGA-90-7769-01 13 108861442 108861442 C A LIG4 Missense_Mutation p.W725C 0.45 deleterious(0) probably_damaging(0.997) TCGA-90-7769-01 13 113487266 113487266 G C ATP11A Silent p.P496P 0.43 TCGA-90-7769-01 13 25015997 25015997 G T PARP4 Missense_Mutation p.A1218D 0.57 deleterious(0.05) benign(0.006) TCGA-90-7769-01 13 32366862 32366862 G A RXFP2 Missense_Mutation p.D475N 0.35 deleterious(0) probably_damaging(1) TCGA-90-7769-01 13 36788672 36788672 C A SOHLH2 Intron 0.40 TCGA-90-7769-01 13 60435607 60435607 C T DIAPH3 Missense_Mutation p.E891K 0.51 deleterious(0) probably_damaging(0.999) TCGA-90-7769-01 14 102028507 102028507 G T DIO3 Missense_Mutation p.R225L 0.19 deleterious(0.01) probably_damaging(0.992) TCGA-90-7769-01 14 104493163 104493163 G A TDRD9 Missense_Mutation p.V1057I 0.24 tolerated(0.09) benign(0.133) TCGA-90-7769-01 14 106110268 106110268 G C IGHG2 Missense_Mutation p.P117R 0.18 deleterious(0) probably_damaging(1) TCGA-90-7769-01 14 106780971 106780971 C G IGHV4-28 5'UTR 0.11 TCGA-90-7769-01 14 107113961 107113961 G T IGHV3-64 Missense_Mutation p.S45Y 0.18 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-90-7769-01 14 20249150 20249150 C A OR4M1 Silent p.A223A 0.18 TCGA-90-7769-01 14 20295616 20295616 C T OR4N2 Silent p.S3S 0.33 TCGA-90-7769-01 14 20295653 20295653 G A OR4N2 Missense_Mutation p.G16S 0.21 deleterious(0.02) possibly_damaging(0.448) TCGA-90-7769-01 14 20528695 20528695 G T OR4L1 Missense_Mutation p.M164I 0.38 tolerated(0.14) benign(0.001) TCGA-90-7769-01 14 22539450 22539450 G T TRAV22 Missense_Mutation p.V104F 0.40 deleterious(0.01) benign(0.067) TCGA-90-7769-01 14 22995837 22995837 A G TRAJ17 Silent p.L9L 0.40 TCGA-90-7769-01 14 23859375 23859375 T G MYH6 Missense_Mutation p.Q1208P 0.17 deleterious(0) benign(0.005) TCGA-90-7769-01 14 30066744 30066744 G A PRKD1 Missense_Mutation p.A796V 0.20 deleterious(0) probably_damaging(0.969) TCGA-90-7769-01 14 39716235 39716235 A T MIA2 Missense_Mutation p.S153C 0.33 deleterious(0.01) possibly_damaging(0.774) TCGA-90-7769-01 14 58831933 58831933 G C ARID4A Missense_Mutation p.E1042D 0.36 deleterious(0.04) benign(0.002) TCGA-90-7769-01 14 63447607 63447607 A T KCNH5 Missense_Mutation p.F309I 0.34 deleterious(0.02) probably_damaging(0.998) TCGA-90-7769-01 14 64464047 64464047 G T SYNE2 Nonsense_Mutation p.G1061* 0.23 TCGA-90-7769-01 14 77795522 77795522 C A GSTZ1 Missense_Mutation p.N133K 0.25 tolerated(0.16) benign(0.002) TCGA-90-7769-01 14 88477904 88477904 G C GPR65 Missense_Mutation p.C238S 0.26 deleterious(0.03) possibly_damaging(0.896) TCGA-90-7769-01 14 93995631 93995631 G - UNC79 Splice_Site p.X175_splice 0.27 TCGA-90-7769-01 14 96922714 96922714 G T AK7 Missense_Mutation p.A377S 0.45 deleterious(0) probably_damaging(0.967) TCGA-90-7769-01 15 22473109 22473109 C A IGHV4OR15-8 Missense_Mutation p.W54C 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.823) TCGA-90-7769-01 15 22473111 22473111 A C IGHV4OR15-8 Missense_Mutation p.W54G 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-90-7769-01 15 23889634 23889634 C A MAGEL2 Missense_Mutation p.A483S 0.67 tolerated(1) benign(0.007) TCGA-90-7769-01 15 23932206 23932206 C A NDN Missense_Mutation p.Q53H 0.50 deleterious(0.05) benign(0.254) TCGA-90-7769-01 15 24923215 24923215 A - NPAP1 Frame_Shift_Del p.Q734Hfs*31 0.19 TCGA-90-7769-01 15 24924331 24924331 G T NPAP1 Missense_Mutation p.G1106V 0.16 tolerated_low_confidence(0.07) possibly_damaging(0.593) TCGA-90-7769-01 15 25232142 25232142 C A SNORD108 RNA 0.59 TCGA-90-7769-01 15 25312950 25312950 C T SNORD116-7 RNA 0.41 TCGA-90-7769-01 15 25332883 25332883 C A SNORD116-20 RNA 0.66 TCGA-90-7769-01 15 25463683 25463683 C G SNORD115-27 5'Flank 0.15 TCGA-90-7769-01 15 25924696 25924696 C A ATP10A Missense_Mutation p.S1431I 0.46 tolerated_low_confidence(0.13) benign(0.071) TCGA-90-7769-01 15 25966825 25966825 C G ATP10A Missense_Mutation p.E448Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-90-7769-01 15 28475643 28475643 G T HERC2 Missense_Mutation p.P1560H 0.33 possibly_damaging(0.887) TCGA-90-7769-01 15 31354838 31354838 C A TRPM1 Missense_Mutation p.A362S 0.21 tolerated(0.79) benign(0.001) TCGA-90-7769-01 15 34647821 34647821 C T NUTM1 Missense_Mutation p.P510S 0.74 tolerated(0.08) benign(0.14) TCGA-90-7769-01 15 42279410 42279410 G A PLA2G4E Silent p.H665H 0.75 TCGA-90-7769-01 15 43940199 43940199 G A CATSPER2 Missense_Mutation p.R21C 0.13 tolerated(0.05) benign(0.134) TCGA-90-7769-01 15 58838121 58838121 C T LIPC Missense_Mutation p.P252L 0.70 deleterious(0) probably_damaging(1) TCGA-90-7769-01 15 71125236 71125236 C G LARP6 Missense_Mutation p.E211Q 0.69 tolerated(0.12) benign(0.326) TCGA-90-7769-01 15 72534287 72534287 C G PARP6 Missense_Mutation p.W582S 0.28 deleterious(0) probably_damaging(0.998) TCGA-90-7769-01 15 72958143 72958143 G A GOLGA6B Missense_Mutation p.E573K 0.23 tolerated(0.07) possibly_damaging(0.486) TCGA-90-7769-01 15 74631599 74631599 T G CYP11A1 Silent p.R405R 0.44 TCGA-90-7769-01 15 74637521 74637521 G T CYP11A1 Silent p.A163A 0.85 TCGA-90-7769-01 15 81637345 81637345 G T TMC3 Missense_Mutation p.A427D 0.90 tolerated(0.3) benign(0.001) TCGA-90-7769-01 15 85488534 85488534 A G SLC28A1 3'UTR 0.89 TCGA-90-7769-01 15 86122893 86122893 A T AKAP13 Missense_Mutation p.S532C 0.72 deleterious_low_confidence(0.02) possibly_damaging(0.723) TCGA-90-7769-01 15 86182644 86182644 G A AKAP13 Missense_Mutation p.D1401N 0.68 deleterious(0.01) benign(0.184) TCGA-90-7769-01 15 99715275 99715275 G T TTC23 Nonsense_Mutation p.S282* 0.33 TCGA-90-7769-01 16 1715058 1715058 A G CRAMP1L Missense_Mutation p.R891G 0.22 deleterious(0) probably_damaging(0.999) TCGA-90-7769-01 16 20477011 20477011 C A ACSM2A Missense_Mutation p.P117H 0.38 deleterious(0) probably_damaging(1) TCGA-90-7769-01 16 20554320 20554320 G A ACSM2B Silent p.P475P 0.25 TCGA-90-7769-01 16 2284196 2284196 A G E4F1 Missense_Mutation p.Q467R 0.38 tolerated(0.4) possibly_damaging(0.719) TCGA-90-7769-01 16 23546548 23546548 T A EARS2 Missense_Mutation p.R207W 0.30 deleterious(0.02) possibly_damaging(0.886) TCGA-90-7769-01 16 23767234 23767234 C T CHP2 Silent p.S69S 0.19 TCGA-90-7769-01 16 24833409 24833409 G T TNRC6A Missense_Mutation p.G1772C 0.35 deleterious(0.02) probably_damaging(0.982) TCGA-90-7769-01 16 27556751 27556751 C T GTF3C1 Silent p.E105E 0.42 TCGA-90-7769-01 16 31497527 31497527 G A SLC5A2 Missense_Mutation p.A169T 0.31 deleterious(0.02) probably_damaging(1) TCGA-90-7769-01 16 53734587 53734587 T C RPGRIP1L Missense_Mutation p.T17A 0.35 tolerated(0.05) benign(0.007) TCGA-90-7769-01 16 55527093 55527093 G - MMP2 Frame_Shift_Del p.G454Afs*44 0.29 TCGA-90-7769-01 16 57552555 57552555 C A CCDC102A Missense_Mutation p.M340I 0.49 tolerated(0.95) benign(0.004) TCGA-90-7769-01 16 69377431 69377431 A T TMED6 Missense_Mutation p.V201E 0.32 deleterious(0) probably_damaging(0.999) TCGA-90-7769-01 16 70190454 70190454 T A PDPR Missense_Mutation p.I771N 0.29 deleterious(0.01) possibly_damaging(0.639) TCGA-90-7769-01 16 70926384 70926384 C A HYDIN Missense_Mutation p.M3099I 0.13 benign(0.216) TCGA-90-7769-01 16 73127062 73127062 C A HCCAT5 RNA 0.37 TCGA-90-7769-01 16 75485628 75485628 G C TMEM170A Missense_Mutation p.F81L 0.20 tolerated(0.29) benign(0.266) TCGA-90-7769-01 16 81654514 81654514 C T CMIP Missense_Mutation p.H154Y 0.35 tolerated(0.17) benign(0.419) TCGA-90-7769-01 16 89598426 89598426 G T SPG7 Missense_Mutation p.V368L 0.28 deleterious(0) probably_damaging(0.999) TCGA-90-7769-01 17 10399755 10399755 T G MYH1 Missense_Mutation p.M1590L 0.12 tolerated(1) benign(0) TCGA-90-7769-01 17 10416220 10416220 A - MYH1 Frame_Shift_Del p.Y290Ifs*11 0.25 TCGA-90-7769-01 17 10438443 10438443 G T MYH2 Silent p.R709R 0.26 TCGA-90-7769-01 17 11607686 11607686 G A DNAH9 Missense_Mutation p.R1773Q 0.29 probably_damaging(1) TCGA-90-7769-01 17 1371302 1371302 A C MYO1C Missense_Mutation p.I959S 0.22 deleterious(0) probably_damaging(0.932) TCGA-90-7769-01 17 1479899 1479899 G A SLC43A2 Missense_Mutation p.P514S 0.58 deleterious(0.01) possibly_damaging(0.721) TCGA-90-7769-01 17 18394609 18394609 T A LGALS9C Missense_Mutation p.V200E 0.37 tolerated(0.08) benign(0.052) TCGA-90-7769-01 17 26684605 26684605 G T TMEM199 5'UTR 0.25 TCGA-90-7769-01 17 27031723 27031723 C T PROCA1 Intron 0.21 TCGA-90-7769-01 17 29221891 29221891 C T ATAD5 Missense_Mutation p.P1832L 0.17 deleterious(0) possibly_damaging(0.616) TCGA-90-7769-01 17 29552119 29552119 G A NF1 Missense_Mutation p.D618N 0.49 tolerated_low_confidence(0.39) benign(0.007) TCGA-90-7769-01 17 38024809 38024809 C - ZPBP2 Frame_Shift_Del p.P21Rfs*24 0.35 TCGA-90-7769-01 17 38450666 38450666 G T CDC6 Missense_Mutation p.A332S 0.27 tolerated(0.11) benign(0.151) TCGA-90-7769-01 17 43592156 43592156 C A LRRC37A4P RNA 0.09 TCGA-90-7769-01 17 46627665 46627665 C T HOXB3 3'UTR 0.31 TCGA-90-7769-01 17 4675383 4675383 G T TM4SF5 Missense_Mutation p.G56W 0.55 deleterious(0) probably_damaging(1) TCGA-90-7769-01 17 48141493 48141493 C A ITGA3 Silent p.R87R 0.32 TCGA-90-7769-01 17 4927434 4927434 G T KIF1C Silent p.G1100G 0.22 TCGA-90-7769-01 17 51901972 51901972 T A KIF2B Silent p.S526S 0.31 TCGA-90-7769-01 17 54428256 54428256 G A ANKFN1 Silent p.G109G 0.35 TCGA-90-7769-01 17 56770075 56770075 G T RAD51C Missense_Mutation p.R24L 0.19 deleterious(0) possibly_damaging(0.498) TCGA-90-7769-01 17 57279060 57279060 A C PRR11 3'UTR 0.37 TCGA-90-7769-01 17 57721677 57721677 G T CLTC Missense_Mutation p.S28I 0.22 deleterious(0.03) probably_damaging(0.957) TCGA-90-7769-01 17 62488865 62488865 C A POLG2 Silent p.S238S 0.21 TCGA-90-7769-01 17 64212984 64212984 C T APOH Missense_Mutation p.D236N 0.25 tolerated(0.32) benign(0.008) TCGA-90-7769-01 17 6606416 6606416 C T SLC13A5 Missense_Mutation p.E197K 0.26 tolerated(0.22) benign(0.008) TCGA-90-7769-01 17 67031533 67031533 G C ABCA9 Missense_Mutation p.P328A 0.54 tolerated(0.25) benign(0.1) TCGA-90-7769-01 17 68129190 68129190 A T KCNJ16 Missense_Mutation p.Y321F 0.22 deleterious(0.02) probably_damaging(0.994) TCGA-90-7769-01 17 7230149 7230149 C A NEURL4 Missense_Mutation p.G325W 0.26 deleterious(0) probably_damaging(1) TCGA-90-7769-01 17 72436007 72436007 G T GPRC5C Missense_Mutation p.C76F 0.23 deleterious(0) probably_damaging(0.997) TCGA-90-7769-01 17 73124887 73124887 T G ARMC7 Silent p.S117S 0.23 TCGA-90-7769-01 17 7417485 7417485 G T POLR2A Nonsense_Mutation p.E1968* 0.36 TCGA-90-7769-01 17 7577141 7577141 C A TP53 Missense_Mutation p.G266V 0.53 deleterious(0) probably_damaging(0.999) TCGA-90-7769-01 17 7578272 7578272 G A TP53 Missense_Mutation p.H193Y 0.27 deleterious(0) probably_damaging(1) TCGA-90-7769-01 17 7751577 7751577 G A KDM6B Silent p.P657P 0.31 TCGA-90-7769-01 17 79077493 79077493 G T BAIAP2 Silent p.P278P 0.59 TCGA-90-7769-01 17 79094643 79094643 C T AATK Silent p.G1031G 0.29 TCGA-90-7769-01 18 22029824 22029824 G A IMPACT Nonsense_Mutation p.W267* 0.39 TCGA-90-7769-01 18 25589767 25589767 G T CDH2 Missense_Mutation p.P206T 0.20 deleterious(0) probably_damaging(1) TCGA-90-7769-01 18 32386226 32386226 T A DTNA Missense_Mutation p.L136I 0.55 deleterious(0.02) probably_damaging(0.999) TCGA-90-7769-01 18 34539312 34539312 C A KIAA1328 Missense_Mutation p.L164M 0.38 deleterious(0.03) probably_damaging(1) TCGA-90-7769-01 18 3814115 3814115 C T DLGAP1 Silent p.R372R 0.10 TCGA-90-7769-01 18 50918071 50918071 C A DCC Silent p.P834P 0.57 TCGA-90-7769-01 18 9887321 9887321 G T TXNDC2 Missense_Mutation p.G282V 0.30 tolerated(0.06) unknown(0) TCGA-90-7769-01 19 11464246 11464246 A G CCDC159 Missense_Mutation p.I229M 0.36 deleterious(0) probably_damaging(0.971) TCGA-90-7769-01 19 16918641 16918641 C G NWD1 Missense_Mutation p.I1327M 0.28 deleterious(0) possibly_damaging(0.615) TCGA-90-7769-01 19 16980808 16980808 G T SIN3B Nonsense_Mutation p.E814* 0.53 TCGA-90-7769-01 19 17597390 17597390 C T SLC27A1 Silent p.I62I 0.25 TCGA-90-7769-01 19 17899225 17899225 A G FCHO1 3'UTR 0.58 TCGA-90-7769-01 19 19040103 19040103 G A HOMER3 3'UTR 0.26 TCGA-90-7769-01 19 19115107 19115107 C A SUGP2 Silent p.L933L 0.23 TCGA-90-7769-01 19 19119190 19119190 C A SUGP2 Missense_Mutation p.A796S 0.47 deleterious(0) probably_damaging(0.999) TCGA-90-7769-01 19 19136473 19136473 C T SUGP2 Silent p.K228K 0.20 TCGA-90-7769-01 19 19338310 19338310 C G NCAN Silent p.S627S 0.26 TCGA-90-7769-01 19 19369440 19369440 C T HAPLN4 Missense_Mutation p.G237R 0.24 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-90-7769-01 19 19906350 19906351 - T ZNF506 Frame_Shift_Ins p.G116Rfs*3 0.44 TCGA-90-7769-01 19 21991691 21991691 G T ZNF43 Nonsense_Mutation p.S383* 0.17 TCGA-90-7769-01 19 22155219 22155219 G T ZNF208 Missense_Mutation p.P873T 0.19 tolerated(0.4) unknown(0) TCGA-90-7769-01 19 22255727 22255727 G T ZNF257 Silent p.L40L 0.37 TCGA-90-7769-01 19 22785203 22785203 G C AC011467.1 5'Flank 0.44 TCGA-90-7769-01 19 23926649 23926649 C A ZNF681 Missense_Mutation p.G568V 0.23 deleterious(0.01) probably_damaging(0.989) TCGA-90-7769-01 19 30934790 30934790 C T ZNF536 Silent p.N107N 0.06 TCGA-90-7769-01 19 33369967 33369967 T C CEP89 3'UTR 0.27 TCGA-90-7769-01 19 36003543 36003543 G T DMKN Silent p.P192P 0.18 TCGA-90-7769-01 19 36053397 36053397 G T ATP4A Silent p.A120A 0.22 TCGA-90-7769-01 19 36214867 36214867 G T KMT2B Missense_Mutation p.G1098V 0.20 probably_damaging(0.994) TCGA-90-7769-01 19 36333296 36333296 G C NPHS1 Missense_Mutation p.R831G 0.35 deleterious(0) probably_damaging(0.95) TCGA-90-7769-01 19 36605731 36605731 C T POLR2I Missense_Mutation p.G10S 0.20 tolerated(0.2) benign(0.23) TCGA-90-7769-01 19 37037869 37037869 C T ZNF529 Missense_Mutation p.D531N 0.27 deleterious(0.01) benign(0.051) TCGA-90-7769-01 19 3816685 3816685 G A ZFR2 Missense_Mutation p.P697L 0.16 deleterious(0) probably_damaging(0.994) TCGA-90-7769-01 19 38189204 38189204 T A ZNF607 Missense_Mutation p.I610F 0.40 deleterious(0.01) probably_damaging(0.979) TCGA-90-7769-01 19 38901631 38901631 C G RASGRP4 Missense_Mutation p.E620D 0.37 tolerated(0.09) benign(0.193) TCGA-90-7769-01 19 38996982 38996982 G A RYR1 Missense_Mutation p.D2861N 0.21 benign(0.146) TCGA-90-7769-01 19 40354452 40354452 T A FCGBP Silent p.L5339L 0.26 TCGA-90-7769-01 19 40363164 40363164 T A FCGBP Missense_Mutation p.H4969L 0.21 possibly_damaging(0.867) TCGA-90-7769-01 19 40928877 40928877 C A SERTAD1 Missense_Mutation p.G193C 0.23 deleterious(0.02) possibly_damaging(0.498) TCGA-90-7769-01 19 42342254 42342255 - T LYPD4 Frame_Shift_Ins p.P98Hfs*36 0.18 TCGA-90-7769-01 19 44097010 44097010 T A IRGQ Missense_Mutation p.E347V 0.17 tolerated(0.11) benign(0.367) TCGA-90-7769-01 19 44590765 44590765 G T ZNF284 Missense_Mutation p.K378N 0.17 deleterious(0) probably_damaging(1) TCGA-90-7769-01 19 4534094 4534094 C T PLIN5 5'UTR 0.20 TCGA-90-7769-01 19 46095200 46095200 G A GPR4 5'UTR 0.22 TCGA-90-7769-01 19 46375759 46375759 C T FOXA3 Missense_Mutation p.R166C 0.22 deleterious(0) probably_damaging(0.999) TCGA-90-7769-01 19 49106774 49106774 C A FAM83E Missense_Mutation p.G385C 0.19 deleterious(0) probably_damaging(0.959) TCGA-90-7769-01 19 49540046 49540046 G A CGB1 5'UTR 0.13 TCGA-90-7769-01 19 49657750 49657750 C G HRC Missense_Mutation p.D249H 0.20 tolerated(0.11) possibly_damaging(0.875) TCGA-90-7769-01 19 49842692 49842692 C A CD37 Intron 0.22 TCGA-90-7769-01 19 50339591 50339591 G C MED25 Missense_Mutation p.G692R 0.17 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-90-7769-01 19 51363151 51363151 C A KLK3 Intron 0.12 TCGA-90-7769-01 19 51381771 51381771 C T KLK2 Missense_Mutation p.H248Y 0.19 tolerated(0.14) benign(0.001) TCGA-90-7769-01 19 53770528 53770528 C G VN1R4 Missense_Mutation p.V131L 0.17 tolerated(0.33) benign(0.008) TCGA-90-7769-01 19 54255678 54255678 C A MIR519A1 RNA 0.17 TCGA-90-7769-01 19 54649660 54649660 G T CNOT3 Missense_Mutation p.A240S 0.32 deleterious(0.02) benign(0.123) TCGA-90-7769-01 19 54974154 54974154 C A LENG9 Missense_Mutation p.A208S 0.21 tolerated(0.72) benign(0.002) TCGA-90-7769-01 19 55666173 55666173 C T TNNI3 Missense_Mutation p.R103H 0.22 deleterious(0.01) possibly_damaging(0.559) TCGA-90-7769-01 19 56244840 56244840 G A NLRP9 Silent p.V119V 0.16 TCGA-90-7769-01 19 56499193 56499193 T A NLRP8 Missense_Mutation p.W1021R 0.20 tolerated_low_confidence(0.67) possibly_damaging(0.608) TCGA-90-7769-01 19 56953606 56953606 C T ZNF667 Missense_Mutation p.C253Y 0.14 tolerated(1) benign(0) TCGA-90-7769-01 19 57324999 57324999 G T PEG3 3'UTR 0.29 TCGA-90-7769-01 19 57325774 57325774 C A PEG3 Missense_Mutation p.V1346F 0.18 deleterious(0.02) probably_damaging(0.936) TCGA-90-7769-01 19 57335661 57335661 C A PEG3 Silent p.L121L 0.15 TCGA-90-7769-01 19 57641922 57641922 G T USP29 Missense_Mutation p.A627S 0.20 tolerated(0.3) benign(0.067) TCGA-90-7769-01 19 58596138 58596138 C A ZSCAN18 Nonsense_Mutation p.E539* 0.46 TCGA-90-7769-01 19 58601318 58601318 C A ZSCAN18 Missense_Mutation p.R162L 0.20 deleterious(0) probably_damaging(0.991) TCGA-90-7769-01 19 7960573 7960573 G A LRRC8E Missense_Mutation p.E29K 0.11 deleterious(0.02) probably_damaging(0.988) TCGA-90-7769-01 19 8152016 8152017 CG - FBN3 Frame_Shift_Del p.A2233Vfs*20 0.19 TCGA-90-7769-01 19 8564499 8564499 C T PRAM1 Missense_Mutation p.G65S 0.20 tolerated(1) benign(0.009) TCGA-90-7769-01 19 9065683 9065683 C G MUC16 Missense_Mutation p.V7255L 0.19 unknown(0) TCGA-90-7769-01 19 9406198 9406198 C T ZNF699 Missense_Mutation p.A628T 0.31 deleterious(0.04) benign(0.265) TCGA-90-7769-01 19 9581188 9581188 C A ZNF560 Missense_Mutation p.V110L 0.27 tolerated(0.16) benign(0.013) TCGA-90-7769-01 19 9801620 9801620 G A ZNF812 Missense_Mutation p.H187Y 0.30 deleterious(0.03) possibly_damaging(0.901) TCGA-90-7769-01 19 984390 984390 T A WDR18 Missense_Mutation p.S13T 0.32 tolerated(0.11) benign(0.345) TCGA-90-7769-01 1 103380318 103380318 G T COL11A1 Missense_Mutation p.A1289D 0.27 unknown(0) TCGA-90-7769-01 1 110559068 110559069 - T AHCYL1 Frame_Shift_Ins p.S296Ffs*26 0.28 TCGA-90-7769-01 1 110604149 110604149 G T ALX3 Missense_Mutation p.R211S 0.32 deleterious(0) probably_damaging(0.998) TCGA-90-7769-01 1 115275368 115275368 C A CSDE1 Missense_Mutation p.D349Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-90-7769-01 1 118558611 118558611 C G SPAG17 Missense_Mutation p.A1422P 0.24 deleterious(0) probably_damaging(0.96) TCGA-90-7769-01 1 145688286 145688286 A T RNF115 3'UTR 0.19 TCGA-90-7769-01 1 151787440 151787440 G T RORC Missense_Mutation p.P254T 0.37 tolerated(0.4) benign(0.004) TCGA-90-7769-01 1 152059108 152059108 C A TCHHL1 Missense_Mutation p.L350F 0.34 tolerated(0.41) benign(0.133) TCGA-90-7769-01 1 155254377 155254377 G A HCN3 Missense_Mutation p.M306I 0.37 deleterious(0) benign(0.089) TCGA-90-7769-01 1 156106784 156106784 C A LMNA Missense_Mutation p.P485T 0.34 deleterious(0.01) benign(0.316) TCGA-90-7769-01 1 157771362 157771362 T G FCRL1 Missense_Mutation p.T298P 0.39 tolerated(0.35) benign(0.014) TCGA-90-7769-01 1 160156480 160156480 G T ATP1A4 Silent p.T1027T 0.16 TCGA-90-7769-01 1 161010446 161010446 G C USF1 Missense_Mutation p.R212G 0.42 deleterious(0) possibly_damaging(0.818) TCGA-90-7769-01 1 16459855 16459855 C T EPHA2 Missense_Mutation p.G625R 0.38 deleterious(0) probably_damaging(0.998) TCGA-90-7769-01 1 167095230 167095230 C A DUSP27 Silent p.R288R 0.72 TCGA-90-7769-01 1 179460772 179460772 G T AXDND1 Nonsense_Mutation p.E731* 0.35 TCGA-90-7769-01 1 18023714 18023714 G T ARHGEF10L Missense_Mutation p.A1227S 0.32 tolerated(0.22) benign(0.023) TCGA-90-7769-01 1 205585739 205585739 T A ELK4 Missense_Mutation p.T411S 0.70 deleterious(0.03) possibly_damaging(0.776) TCGA-90-7769-01 1 208390126 208390126 A G PLXNA2 Missense_Mutation p.L381P 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-90-7769-01 1 21048437 21048438 CC - SH2D5 Frame_Shift_Del p.V374Yfs*2 0.30 TCGA-90-7769-01 1 21306909 21306909 G A EIF4G3 Silent p.P88P 0.50 TCGA-90-7769-01 1 215990392 215990392 A G USH2A Missense_Mutation p.C3173R 0.33 probably_damaging(0.994) TCGA-90-7769-01 1 219366486 219366486 A G LYPLAL1 Missense_Mutation p.N85S 0.39 tolerated(0.4) benign(0.011) TCGA-90-7769-01 1 228437925 228437925 C T OBSCN Silent p.F1523F 0.40 TCGA-90-7769-01 1 228481251 228481251 G A OBSCN Missense_Mutation p.E4118K 0.29 benign(0.017) TCGA-90-7769-01 1 230916289 230916289 A T CAPN9 Missense_Mutation p.Y439F 0.35 tolerated(0.44) benign(0.077) TCGA-90-7769-01 1 235969707 235969707 C A LYST Missense_Mutation p.S910I 0.72 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-90-7769-01 1 24180973 24180973 T A FUCA1 Missense_Mutation p.K282N 0.33 deleterious(0) probably_damaging(0.987) TCGA-90-7769-01 1 241850808 241850808 T A WDR64 Nonsense_Mutation p.Y285* 0.32 TCGA-90-7769-01 1 247492503 247492503 T A ZNF496 Missense_Mutation p.R126S 0.78 deleterious(0) probably_damaging(1) TCGA-90-7769-01 1 248525769 248525769 C A OR2T4 Missense_Mutation p.S296Y 0.31 deleterious(0.01) probably_damaging(0.977) TCGA-90-7769-01 1 248756596 248756596 C G OR2T10 Missense_Mutation p.M158I 0.31 tolerated(0.8) benign(0.009) TCGA-90-7769-01 1 2524098 2524098 T C MMEL1 Missense_Mutation p.Y688C 0.50 deleterious(0) probably_damaging(0.997) TCGA-90-7769-01 1 31208094 31208094 C A LAPTM5 Missense_Mutation p.V209L 0.33 deleterious(0) probably_damaging(0.991) TCGA-90-7769-01 1 32196861 32196861 G T BAI2 Missense_Mutation p.A1307E 0.24 tolerated(0.94) benign(0.201) TCGA-90-7769-01 1 38435087 38435087 T A SF3A3 Missense_Mutation p.N407I 0.30 tolerated(0.12) probably_damaging(0.934) TCGA-90-7769-01 1 46032350 46032350 G T AKR1A1 Missense_Mutation p.G65V 0.37 tolerated(0.12) possibly_damaging(0.616) TCGA-90-7769-01 1 52940913 52940913 G A ZCCHC11 Missense_Mutation p.S773L 0.27 deleterious(0.03) benign(0.272) TCGA-90-7769-01 1 53546414 53546414 C A PODN Silent p.A557A 0.23 TCGA-90-7769-01 1 59922631 59922631 A T FGGY Splice_Site p.X185_splice 0.38 TCGA-90-7769-01 1 65243437 65243437 C G RAVER2 Missense_Mutation p.P150A 0.35 deleterious(0) probably_damaging(1) TCGA-90-7769-01 1 6528188 6528188 G A PLEKHG5 Missense_Mutation p.S982L 0.29 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-90-7769-01 1 75038240 75038240 T A C1orf173 Nonsense_Mutation p.K1052* 0.33 TCGA-90-7769-01 1 76251904 76251904 G T RABGGTB 5'UTR 0.26 TCGA-90-7769-01 1 8555148 8555149 - C RERE Frame_Shift_Ins p.D360Gfs*12 0.27 TCGA-90-7769-01 1 86304320 86304320 C G COL24A1 Missense_Mutation p.G1210A 0.40 deleterious(0) probably_damaging(1) TCGA-90-7769-01 1 86898072 86898072 G C CLCA2 Missense_Mutation p.G202A 0.36 deleterious(0) probably_damaging(0.996) TCGA-90-7769-01 1 89658703 89658703 G A GBP4 Missense_Mutation p.A185V 0.32 tolerated(1) benign(0.002) TCGA-90-7769-01 1 92459644 92459644 G C BRDT Missense_Mutation p.G707A 0.32 tolerated(0.52) benign(0.003) TCGA-90-7769-01 1 93297618 93297618 C T RPL5 5'UTR 0.30 TCGA-90-7769-01 1 93297619 93297619 G T RPL5 5'UTR 0.30 TCGA-90-7769-01 20 1585579 1585579 C A SIRPB1 Intron 0.43 TCGA-90-7769-01 20 1616903 1616903 C G SIRPG Missense_Mutation p.E227Q 0.49 tolerated(0.27) possibly_damaging(0.591) TCGA-90-7769-01 20 18432495 18432495 C T DZANK1 Intron 0.13 TCGA-90-7769-01 20 20279001 20279001 C A C20orf26 Nonsense_Mutation p.Y1131* 0.45 TCGA-90-7769-01 20 210409 210409 G A DEFB129 Silent p.Q183Q 0.26 TCGA-90-7769-01 20 21313053 21313053 G T XRN2 Missense_Mutation p.G278V 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-90-7769-01 20 23029316 23029316 C G THBD Missense_Mutation p.D276H 0.19 deleterious(0) probably_damaging(1) TCGA-90-7769-01 20 25457505 25457505 C T NINL Missense_Mutation p.E808K 0.11 tolerated(1) benign(0) TCGA-90-7769-01 20 256607 256607 A G C20orf96 Splice_Site p.X344_splice 0.30 TCGA-90-7769-01 20 30418942 30418942 G T MYLK2 Missense_Mutation p.M474I 0.45 tolerated(0.11) possibly_damaging(0.815) TCGA-90-7769-01 20 31607537 31607537 C A BPIFB2 Missense_Mutation p.S354Y 0.19 tolerated(0.11) benign(0.166) TCGA-90-7769-01 20 31805458 31805458 C T BPIFA3 Missense_Mutation p.T39I 0.19 deleterious(0.05) possibly_damaging(0.682) TCGA-90-7769-01 20 36859728 36859728 C A KIAA1755 Splice_Site p.X583_splice 0.50 TCGA-90-7769-01 20 44237416 44237416 C T WFDC9 Nonsense_Mutation p.W42* 0.23 TCGA-90-7769-01 20 47569409 47569409 G T ARFGEF2 Missense_Mutation p.M197I 0.47 deleterious(0.01) benign(0.049) TCGA-90-7769-01 20 56136520 56136520 G T PCK1 Missense_Mutation p.G18V 0.24 deleterious(0.01) possibly_damaging(0.674) TCGA-90-7769-01 20 60890264 60890264 C T LAMA5 Splice_Site p.X2623_splice 0.13 TCGA-90-7769-01 20 60904046 60904046 C A LAMA5 Missense_Mutation p.G1434V 0.16 benign(0.023) TCGA-90-7769-01 21 10920092 10920092 G T TPTE Missense_Mutation p.P388T 0.14 deleterious(0) probably_damaging(0.95) TCGA-90-7769-01 21 10942993 10942993 T C TPTE Silent p.R198R 0.11 TCGA-90-7769-01 21 31802778 31802778 A G KRTAP13-4 Missense_Mutation p.Q62R 0.75 deleterious(0.01) benign(0.169) TCGA-90-7769-01 21 39087058 39087058 G A KCNJ6 Silent p.T134T 0.70 TCGA-90-7769-01 21 47647589 47647589 C A LSS Missense_Mutation p.D66Y 0.58 deleterious(0) benign(0.39) TCGA-90-7769-01 22 16256627 16256627 C A POTEH 3'UTR 0.16 TCGA-90-7769-01 22 17072952 17072952 C A CCT8L2 Missense_Mutation p.W163C 0.30 tolerated(0.08) probably_damaging(0.979) TCGA-90-7769-01 22 21989027 21989027 G A CCDC116 Silent p.L225L 0.23 TCGA-90-7769-01 22 22893371 22893371 C A PRAME Silent p.P54P 0.31 TCGA-90-7769-01 22 23011019 23011019 T C IGLV3-27 Missense_Mutation p.S28P 0.28 deleterious(0.03) benign(0.229) TCGA-90-7769-01 22 23011020 23011020 C T IGLV3-27 Missense_Mutation p.S28L 0.27 deleterious(0.04) benign(0.154) TCGA-90-7769-01 22 23656808 23656808 G A BCR Silent p.L1211L 0.48 TCGA-90-7769-01 22 23959806 23959806 G A C22orf43 Nonsense_Mutation p.R159* 0.29 TCGA-90-7769-01 22 29455047 29455047 G T C22orf31 Silent p.R186R 0.26 TCGA-90-7769-01 22 33700272 33700272 T C LARGE Missense_Mutation p.Y558C 0.23 deleterious(0) probably_damaging(0.974) TCGA-90-7769-01 22 39445506 39445506 G A APOBEC3F Missense_Mutation p.E215K 0.23 tolerated(0.19) probably_damaging(0.953) TCGA-90-7769-01 22 41076967 41076967 A T MCHR1 Missense_Mutation p.T102S 0.26 tolerated(0.76) benign(0.002) TCGA-90-7769-01 22 42415731 42415731 G A WBP2NL Silent p.L79L 0.23 TCGA-90-7769-01 22 45574330 45574330 A T NUP50 Silent p.T184T 0.35 TCGA-90-7769-01 22 50278902 50278902 C A ZBED4 Missense_Mutation p.A531E 0.27 tolerated(0.12) benign(0.393) TCGA-90-7769-01 2 10073935 10073935 A G TAF1B Missense_Mutation p.Y530C 0.18 deleterious(0) probably_damaging(0.99) TCGA-90-7769-01 2 103324635 103324635 C A SLC9A2 Missense_Mutation p.P709H 0.34 deleterious(0.01) possibly_damaging(0.789) TCGA-90-7769-01 2 105858769 105858769 A G GPR45 Missense_Mutation p.I152V 0.41 deleterious(0.01) probably_damaging(0.934) TCGA-90-7769-01 2 107029591 107029591 T C RGPD3 Missense_Mutation p.M1739V 0.39 deleterious_low_confidence(0) benign(0.072) TCGA-90-7769-01 2 113146140 113146140 T C RGPD8 Missense_Mutation p.D1461G 0.17 deleterious(0.01) probably_damaging(0.966) TCGA-90-7769-01 2 116510782 116510782 G C DPP10 Missense_Mutation p.S332T 0.33 tolerated(1) benign(0.024) TCGA-90-7769-01 2 11696598 11696598 G A GREB1 5'UTR 0.27 TCGA-90-7769-01 2 120677780 120677780 G A PTPN4 Missense_Mutation p.A322T 0.20 tolerated(0.12) possibly_damaging(0.843) TCGA-90-7769-01 2 128913161 128913161 G - UGGT1 Frame_Shift_Del 0.23 TCGA-90-7769-01 2 133489402 133489402 T A NCKAP5 Missense_Mutation p.D1784V 0.52 deleterious(0.02) possibly_damaging(0.587) TCGA-90-7769-01 2 136564744 136564744 C A LCT Missense_Mutation p.R1376L 0.29 tolerated(0.34) benign(0.008) TCGA-90-7769-01 2 137814034 137814034 C A THSD7B Missense_Mutation p.Q62K 0.32 deleterious(0.01) benign(0.092) TCGA-90-7769-01 2 137814431 137814431 G C THSD7B Missense_Mutation p.G194A 0.34 tolerated(0.1) probably_damaging(0.934) TCGA-90-7769-01 2 138758592 138758592 A G HNMT Missense_Mutation p.K99E 0.18 deleterious(0.02) possibly_damaging(0.875) TCGA-90-7769-01 2 145156457 145156457 A T ZEB2 Missense_Mutation p.F766Y 0.49 tolerated(0.29) benign(0.002) TCGA-90-7769-01 2 150327286 150327286 A G LYPD6 Missense_Mutation p.I146M 0.51 tolerated(0.06) possibly_damaging(0.711) TCGA-90-7769-01 2 15514792 15514792 C T NBAS Missense_Mutation p.D1215N 0.53 tolerated(0.1) benign(0.19) TCGA-90-7769-01 2 165947481 165947481 G C SCN3A Missense_Mutation p.P1728A 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-90-7769-01 2 166850846 166850846 G T SCN1A Missense_Mutation p.N1554K 0.33 deleterious(0) probably_damaging(0.999) TCGA-90-7769-01 2 170557708 170557708 C G PHOSPHO2 Missense_Mutation p.P76R 0.37 deleterious(0.01) benign(0.225) TCGA-90-7769-01 2 179413165 179413165 C T TTN Nonsense_Mutation p.W31063* 0.35 TCGA-90-7769-01 2 179440258 179440258 G T TTN Missense_Mutation p.S23534Y 0.32 TCGA-90-7769-01 2 179446311 179446311 A T TTN Nonsense_Mutation p.Y22228* 0.52 TCGA-90-7769-01 2 179650389 179650389 A G TTN Silent p.T817T 0.37 TCGA-90-7769-01 2 179664585 179664585 C A TTN Missense_Mutation p.Q212H 0.35 TCGA-90-7769-01 2 192011475 192011475 G A STAT4 Missense_Mutation p.A46V 0.29 tolerated(0.17) possibly_damaging(0.817) TCGA-90-7769-01 2 196681444 196681444 A T DNAH7 Silent p.I3223I 0.49 TCGA-90-7769-01 2 197086993 197086993 T C HECW2 Missense_Mutation p.N1363S 0.61 deleterious(0.01) probably_damaging(0.982) TCGA-90-7769-01 2 207172525 207172526 - A ZDBF2 Frame_Shift_Ins p.I1094Nfs*14 0.38 TCGA-90-7769-01 2 224809993 224809993 G A WDFY1 Silent p.A3A 0.68 TCGA-90-7769-01 2 238274610 238274610 C A COL6A3 Missense_Mutation p.G1857C 0.59 probably_damaging(0.984) TCGA-90-7769-01 2 239079610 239079610 C G ILKAP Missense_Mutation p.V338L 0.61 tolerated(0.1) possibly_damaging(0.534) TCGA-90-7769-01 2 24952438 24952438 A G NCOA1 Silent p.E985E 0.25 TCGA-90-7769-01 2 32666418 32666418 A T BIRC6 Missense_Mutation p.N1278Y 0.18 benign(0.024) TCGA-90-7769-01 2 33752326 33752326 A T RASGRP3 Silent p.I310I 0.61 TCGA-90-7769-01 2 3660908 3660908 G C COLEC11 Silent p.A60A 0.45 TCGA-90-7769-01 2 37246967 37246967 T C HEATR5B Missense_Mutation p.I1363M 0.43 deleterious(0.03) benign(0.023) TCGA-90-7769-01 2 37406697 37406697 T C SULT6B1 Missense_Mutation p.T107A 0.23 tolerated(0.1) benign(0.114) TCGA-90-7769-01 2 44445671 44445671 G A PPM1B Missense_Mutation p.D377N 0.26 deleterious(0.01) benign(0.227) TCGA-90-7769-01 2 44599948 44599948 G T CAMKMT Nonsense_Mutation p.E78* 0.25 TCGA-90-7769-01 2 47710087 47710087 G T MSH2 Nonstop_Mutation p.*935Lext*7 0.26 TCGA-90-7769-01 2 73651697 73651697 G C ALMS1 Missense_Mutation p.G302R 0.26 possibly_damaging(0.576) TCGA-90-7769-01 2 88482331 88482331 G T THNSL2 Missense_Mutation p.V306F 0.26 deleterious(0) probably_damaging(0.928) TCGA-90-7769-01 2 88874538 88874538 C G EIF2AK3 Missense_Mutation p.E821D 0.30 tolerated(0.6) benign(0.002) TCGA-90-7769-01 2 89156941 89156941 G T IGKC Missense_Mutation p.A86D 0.19 tolerated(0.12) benign(0.041) TCGA-90-7769-01 2 91843439 91843439 C T AC027612.6 RNA 0.24 TCGA-90-7769-01 2 9637358 9637358 C A ADAM17 Silent p.P556P 0.26 TCGA-90-7769-01 2 98852898 98852898 C T VWA3B Missense_Mutation p.S825L 0.25 tolerated(0.67) benign(0.002) TCGA-90-7769-01 3 10387766 10387766 G T ATP2B2 Missense_Mutation p.D820E 0.63 deleterious(0) probably_damaging(0.999) TCGA-90-7769-01 3 114070396 114070396 C G ZBTB20 Missense_Mutation p.A177P 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-90-7769-01 3 119325689 119325689 G C PLA1A Missense_Mutation p.D48H 0.25 deleterious(0.04) possibly_damaging(0.465) TCGA-90-7769-01 3 120977986 120977986 T C STXBP5L Silent p.T643T 0.36 TCGA-90-7769-01 3 124201667 124201667 C G KALRN Missense_Mutation p.R1400G 0.13 deleterious(0) possibly_damaging(0.707) TCGA-90-7769-01 3 127817785 127817785 C A RUVBL1 Nonsense_Mutation p.G253* 0.22 TCGA-90-7769-01 3 147114164 147114164 G T ZIC4 Missense_Mutation p.P105T 0.36 deleterious(0.03) benign(0.07) TCGA-90-7769-01 3 151046040 151046040 A - P2RY13 Frame_Shift_Del p.F268Lfs*48 0.25 TCGA-90-7769-01 3 155547476 155547476 C G SLC33A1 Splice_Site p.X494_splice 0.26 TCGA-90-7769-01 3 164907937 164907937 G T SLITRK3 Missense_Mutation p.Q228K 0.10 deleterious(0) probably_damaging(0.994) TCGA-90-7769-01 3 167747644 167747644 G C GOLIM4 Missense_Mutation p.Q453E 0.54 tolerated(1) benign(0.028) TCGA-90-7769-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.28 tolerated(0.11) possibly_damaging(0.529) TCGA-90-7769-01 3 186954092 186954092 G A MASP1 Missense_Mutation p.H523Y 0.57 tolerated(0.1) benign(0.26) TCGA-90-7769-01 3 188327205 188327205 A T LPP Missense_Mutation p.Q229L 0.10 deleterious(0) benign(0.344) TCGA-90-7769-01 3 190993077 190993077 C A UTS2B Missense_Mutation p.V100L 0.76 tolerated(0.43) benign(0) TCGA-90-7769-01 3 193130086 193130086 T A ATP13A4 Missense_Mutation p.N1030I 0.16 deleterious(0.01) benign(0.001) TCGA-90-7769-01 3 196159278 196159278 C T UBXN7 5'UTR 0.17 TCGA-90-7769-01 3 3221359 3221359 C A CRBN Nonsense_Mutation p.G5* 0.62 TCGA-90-7769-01 3 42299638 42299638 C G CCK Missense_Mutation p.W100C 0.66 deleterious(0) probably_damaging(0.978) TCGA-90-7769-01 3 424268 424268 G T CHL1 Missense_Mutation p.R697I 0.68 deleterious(0.02) benign(0.272) TCGA-90-7769-01 3 45636732 45636732 G T LIMD1 Missense_Mutation p.A121S 0.72 tolerated(0.1) benign(0.005) TCGA-90-7769-01 3 52262967 52262967 G A TWF2 3'UTR 0.59 TCGA-90-7769-01 3 52833065 52833065 T A ITIH3 Silent p.T249T 0.85 TCGA-90-7769-01 3 71037225 71037225 C A FOXP1 Missense_Mutation p.A358S 0.75 tolerated(0.38) benign(0.002) TCGA-90-7769-01 3 73433258 73433258 G C PDZRN3 Missense_Mutation p.P820R 0.66 tolerated(0.17) benign(0.001) TCGA-90-7769-01 3 96706223 96706223 A G EPHA6 Missense_Mutation p.Y167C 0.27 deleterious(0) probably_damaging(0.927) TCGA-90-7769-01 3 97887716 97887716 C A OR5H15 Missense_Mutation p.P58Q 0.09 deleterious(0) probably_damaging(0.96) TCGA-90-7769-01 4 104079456 104079456 C T CENPE Splice_Site p.X1011_splice 0.38 TCGA-90-7769-01 4 109767296 109767296 G T COL25A1 Missense_Mutation p.P505Q 0.26 deleterious(0.04) possibly_damaging(0.789) TCGA-90-7769-01 4 111482674 111482674 C A ENPEP Missense_Mutation p.T945N 0.32 tolerated(0.32) benign(0.045) TCGA-90-7769-01 4 13602947 13602947 G A BOD1L1 Silent p.G1859G 0.09 TCGA-90-7769-01 4 141264807 141264807 G A RP11-425I13.3 Intron 0.19 TCGA-90-7769-01 4 151505095 151505095 T A MAB21L2 Missense_Mutation p.L305Q 0.28 deleterious(0.03) probably_damaging(0.968) TCGA-90-7769-01 4 158262585 158262585 G T GRIA2 Missense_Mutation p.D672Y 0.34 deleterious(0.03) probably_damaging(0.959) TCGA-90-7769-01 4 1657159 1657159 T G FAM53A Missense_Mutation p.K143T 0.38 tolerated(0.07) benign(0.031) TCGA-90-7769-01 4 165962392 165962392 C T TRIM60 Nonsense_Mutation p.R390* 0.21 TCGA-90-7769-01 4 188924847 188924847 A T ZFP42 Missense_Mutation p.I296F 0.58 deleterious(0.02) benign(0.104) TCGA-90-7769-01 4 2909557 2909557 G T ADD1 Nonsense_Mutation p.E532* 0.36 TCGA-90-7769-01 4 42403472 42403472 G T SHISA3 3'UTR 0.20 TCGA-90-7769-01 4 42895363 42895363 G C GRXCR1 Missense_Mutation p.R27P 0.50 deleterious(0) probably_damaging(0.999) TCGA-90-7769-01 4 47427844 47427844 G C GABRB1 Missense_Mutation p.E412Q 0.20 tolerated(0.53) benign(0.016) TCGA-90-7769-01 4 47896228 47896228 C G NFXL1 Missense_Mutation p.R474P 0.24 deleterious(0) possibly_damaging(0.744) TCGA-90-7769-01 4 57182729 57182729 C T KIAA1211 Missense_Mutation p.P1021S 0.18 tolerated(0.19) possibly_damaging(0.803) TCGA-90-7769-01 4 57272705 57272705 C - PPAT Frame_Shift_Del p.A120Hfs*7 0.18 TCGA-90-7769-01 4 62863891 62863891 G T LPHN3 Splice_Site p.X1034_splice 0.29 TCGA-90-7769-01 4 69536124 69536124 A G UGT2B15 Silent p.A71A 0.23 TCGA-90-7769-01 4 71232409 71232409 C A SMR3A Missense_Mutation p.L35M 0.14 deleterious_low_confidence(0) unknown(0) TCGA-90-7769-01 4 73149156 73149156 G A ADAMTS3 Silent p.S1105S 0.22 TCGA-90-7769-01 4 77818329 77818329 G A SOWAHB Missense_Mutation p.P225L 0.14 tolerated(0.08) possibly_damaging(0.726) TCGA-90-7769-01 4 79462123 79462123 G A FRAS1 Missense_Mutation p.V3962M 0.32 benign(0.27) TCGA-90-7769-01 4 88400610 88400610 C G SPARCL1 Missense_Mutation p.E646D 0.26 deleterious(0) probably_damaging(0.999) TCGA-90-7769-01 4 88411437 88411437 C A SPARCL1 Nonsense_Mutation p.G507* 0.35 TCGA-90-7769-01 4 89708953 89708953 G A FAM13A Missense_Mutation p.R408C 0.29 deleterious(0) possibly_damaging(0.893) TCGA-90-7769-01 4 95206175 95206175 C T SMARCAD1 Nonsense_Mutation p.Q994* 0.27 TCGA-90-7769-01 4 9784469 9784469 C T DRD5 Silent p.C272C 0.44 TCGA-90-7769-01 4 99055536 99055536 C A STPG2 Missense_Mutation p.V62F 0.28 deleterious(0.01) benign(0.232) TCGA-90-7769-01 5 100222259 100222259 C A ST8SIA4 Silent p.V97V 0.36 TCGA-90-7769-01 5 112178016 112178016 G A APC Missense_Mutation p.S2242N 0.68 probably_damaging(0.999) TCGA-90-7769-01 5 115318990 115318990 G C AQPEP Silent p.L234L 0.53 TCGA-90-7769-01 5 129040038 129040038 A C ADAMTS19 Missense_Mutation p.E1083A 0.33 deleterious(0.02) probably_damaging(0.968) TCGA-90-7769-01 5 137733981 137733981 A G KDM3B Missense_Mutation p.I982M 0.36 deleterious(0.01) benign(0.344) TCGA-90-7769-01 5 140516632 140516632 C G PCDHB5 Missense_Mutation p.A539G 0.37 deleterious_low_confidence(0) possibly_damaging(0.549) TCGA-90-7769-01 5 140741305 140741305 C A PCDHGB2 Missense_Mutation p.R535S 0.56 tolerated(0.16) possibly_damaging(0.61) TCGA-90-7769-01 5 140741307 140741307 C G PCDHGB2 Silent p.R535R 0.48 TCGA-90-7769-01 5 140756024 140756024 C G PCDHGA6 Missense_Mutation p.L792V 0.28 deleterious_low_confidence(0.01) benign(0.178) TCGA-90-7769-01 5 14502742 14502742 A G TRIO Missense_Mutation p.Y2796C 0.79 unknown(0) TCGA-90-7769-01 5 147820062 147820062 C A FBXO38 Silent p.P1007P 0.23 TCGA-90-7769-01 5 151234636 151234636 T A GLRA1 Missense_Mutation p.K221M 0.45 deleterious(0.03) probably_damaging(0.986) TCGA-90-7769-01 5 1593253 1593253 C G CTD-2012J19.3 5'Flank 0.76 TCGA-90-7769-01 5 169469018 169469018 G T DOCK2 Missense_Mutation p.W1253L 0.85 deleterious(0) probably_damaging(0.974) TCGA-90-7769-01 5 170149807 170149807 G T KCNIP1 Nonsense_Mutation p.G151* 0.68 TCGA-90-7769-01 5 176520758 176520758 G C FGFR4 Missense_Mutation p.A501P 0.33 deleterious(0.01) probably_damaging(1) TCGA-90-7769-01 5 178413394 178413394 G T GRM6 Silent p.R621R 0.42 TCGA-90-7769-01 5 178413713 178413713 G A GRM6 Silent p.P514P 0.65 TCGA-90-7769-01 5 23509150 23509150 C G PRDM9 Missense_Mutation p.P3R 0.53 deleterious_low_confidence(0.04) unknown(0) TCGA-90-7769-01 5 31799559 31799559 C T PDZD2 Silent p.I68I 0.13 TCGA-90-7769-01 5 32274174 32274174 G A MTMR12 Missense_Mutation p.S66F 0.34 deleterious(0) benign(0.089) TCGA-90-7769-01 5 45261976 45261976 T A HCN1 3'UTR 0.28 TCGA-90-7769-01 5 45262597 45262597 G T HCN1 Missense_Mutation p.T700N 0.36 tolerated_low_confidence(0.1) benign(0.133) TCGA-90-7769-01 5 45645619 45645619 T A HCN1 Missense_Mutation p.T173S 0.17 tolerated(0.08) benign(0.055) TCGA-90-7769-01 5 5463524 5463524 G C KIAA0947 Silent p.G1359G 0.27 TCGA-90-7769-01 5 64468721 64468721 G A ADAMTS6 Missense_Mutation p.R1009C 0.32 deleterious(0.02) probably_damaging(0.93) TCGA-90-7769-01 5 7802344 7802344 A T ADCY2 Missense_Mutation p.Q881L 0.47 deleterious(0) probably_damaging(0.983) TCGA-90-7769-01 5 78340239 78340239 C T DMGDH Silent p.L294L 0.25 TCGA-90-7769-01 5 82808135 82808135 G T VCAN Missense_Mutation p.G321V 0.50 deleterious(0) probably_damaging(0.998) TCGA-90-7769-01 5 96315341 96315341 G A LNPEP Silent p.V173V 0.68 TCGA-90-7769-01 6 100838237 100838237 T C SIM1 Nonstop_Mutation p.*767Wext*17 0.34 TCGA-90-7769-01 6 108225925 108225925 T G SEC63 Missense_Mutation p.D321A 0.30 deleterious(0) probably_damaging(1) TCGA-90-7769-01 6 110059549 110059549 A T FIG4 Missense_Mutation p.E223V 0.33 tolerated(0.2) benign(0.016) TCGA-90-7769-01 6 110636560 110636560 C A METTL24 Missense_Mutation p.R181L 0.33 tolerated(0.44) benign(0.215) TCGA-90-7769-01 6 111214142 111214142 A C AMD1 Silent p.P246P 0.36 TCGA-90-7769-01 6 111688567 111688567 C T REV3L Missense_Mutation p.D2142N 0.30 tolerated(0.42) benign(0.002) TCGA-90-7769-01 6 116446642 116446642 A G COL10A1 Missense_Mutation p.I5T 0.28 tolerated_low_confidence(0.27) unknown(0) TCGA-90-7769-01 6 11723583 11723583 C A ADTRP Missense_Mutation p.W237C 0.61 deleterious(0) probably_damaging(1) TCGA-90-7769-01 6 132939250 132939250 G T TAAR2 Missense_Mutation p.S32Y 0.37 deleterious(0) probably_damaging(0.91) TCGA-90-7769-01 6 146480539 146480539 C A GRM1 Silent p.G252G 0.30 TCGA-90-7769-01 6 150005575 150005575 C A LATS1 Missense_Mutation p.G217V 0.31 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-90-7769-01 6 150240586 150240586 G T RAET1G Intron 0.30 TCGA-90-7769-01 6 151247379 151247379 G A MTHFD1L Missense_Mutation p.V402M 0.23 deleterious(0.01) possibly_damaging(0.61) TCGA-90-7769-01 6 152542110 152542110 C G SYNE1 Missense_Mutation p.R7243T 0.33 benign(0.027) TCGA-90-7769-01 6 153292435 153292435 A G FBXO5 Missense_Mutation p.F403L 0.38 deleterious(0.05) possibly_damaging(0.788) TCGA-90-7769-01 6 153332840 153332840 G A RGS17 Missense_Mutation p.P168S 0.47 tolerated(0.67) benign(0.004) TCGA-90-7769-01 6 157502186 157502186 C T ARID1B Silent p.V1073V 0.09 TCGA-90-7769-01 6 159457081 159457081 G T TAGAP Missense_Mutation p.H658Q 0.34 tolerated(0.6) possibly_damaging(0.544) TCGA-90-7769-01 6 160445687 160445687 T G IGF2R Missense_Mutation p.D199E 0.27 deleterious(0.04) benign(0.112) TCGA-90-7769-01 6 160679507 160679507 C A SLC22A2 Missense_Mutation p.D95Y 0.43 deleterious(0) probably_damaging(0.996) TCGA-90-7769-01 6 160903746 160903746 C G LPAL2 RNA 0.25 TCGA-90-7769-01 6 165693599 165693599 C A C6orf118 Missense_Mutation p.G453W 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.567) TCGA-90-7769-01 6 168370508 168370508 A C MLLT4 Missense_Mutation p.T279P 0.25 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-90-7769-01 6 28540308 28540308 G C SCAND3 Missense_Mutation p.Q1120E 0.77 deleterious(0) probably_damaging(0.931) TCGA-90-7769-01 6 35254147 35254147 G T ZNF76 Missense_Mutation p.S68I 0.23 deleterious(0) benign(0.038) TCGA-90-7769-01 6 36762409 36762409 A G CPNE5 Missense_Mutation p.L141P 0.26 tolerated(0.1) benign(0.001) TCGA-90-7769-01 6 41165950 41165950 G A TREML2 Silent p.T91T 0.35 TCGA-90-7769-01 6 41248872 41248872 G C TREM1 Silent p.G142G 0.23 TCGA-90-7769-01 6 44310837 44310837 G T SPATS1 Missense_Mutation p.S2I 0.29 deleterious_low_confidence(0.01) benign(0.071) TCGA-90-7769-01 6 55925811 55925811 C A COL21A1 Missense_Mutation p.V744F 0.11 tolerated(0.72) benign(0.006) TCGA-90-7769-01 6 75866223 75866223 T A COL12A1 Missense_Mutation p.K1000N 0.23 possibly_damaging(0.5) TCGA-90-7769-01 6 90576573 90576573 C G CASP8AP2 RNA 0.26 TCGA-90-7769-01 6 96651524 96651524 C A FUT9 Missense_Mutation p.Q165K 0.35 tolerated(0.9) benign(0.065) TCGA-90-7769-01 7 100676662 100676662 C G MUC17 Missense_Mutation p.D655E 0.18 possibly_damaging(0.692) TCGA-90-7769-01 7 100677922 100677922 T A MUC17 Silent p.T1075T 0.20 TCGA-90-7769-01 7 102136616 102136616 C G RASA4B Missense_Mutation p.A348P 0.23 deleterious(0) probably_damaging(0.989) TCGA-90-7769-01 7 102760244 102760244 G A NAPEPLD Missense_Mutation p.H241Y 0.16 tolerated(0.07) benign(0.015) TCGA-90-7769-01 7 103276724 103276724 C T RELN Missense_Mutation p.R754Q 0.30 tolerated(0.41) possibly_damaging(0.623) TCGA-90-7769-01 7 106508417 106508417 G T PIK3CG Silent p.L137L 0.20 TCGA-90-7769-01 7 115581064 115581064 C T TFEC Intron 0.14 TCGA-90-7769-01 7 117351685 117351685 C T CTTNBP2 Missense_Mutation p.S1633N 0.35 tolerated(0.06) probably_damaging(0.998) TCGA-90-7769-01 7 117864796 117864796 G T ANKRD7 5'UTR 0.38 TCGA-90-7769-01 7 123264674 123264674 C G ASB15 Missense_Mutation p.T168S 0.16 tolerated(0.14) benign(0.001) TCGA-90-7769-01 7 126086192 126086192 G T GRM8 Missense_Mutation p.L889I 0.22 tolerated(0.22) benign(0.364) TCGA-90-7769-01 7 127326695 127326695 G C SND1 Missense_Mutation p.R36P 0.18 deleterious(0) probably_damaging(0.995) TCGA-90-7769-01 7 128480966 128480966 G T FLNC Missense_Mutation p.Q585H 0.25 tolerated(0.35) possibly_damaging(0.796) TCGA-90-7769-01 7 138603485 138603485 C T KIAA1549 Missense_Mutation p.G296D 0.22 tolerated(0.07) benign(0.037) TCGA-90-7769-01 7 139575387 139575387 T C TBXAS1 Missense_Mutation p.F64L 0.16 tolerated(0.11) benign(0.073) TCGA-90-7769-01 7 140373710 140373710 T G ADCK2 Missense_Mutation p.W194G 0.09 deleterious(0.04) possibly_damaging(0.728) TCGA-90-7769-01 7 142013025 142013025 C A TRBV4-1 5'UTR 0.37 TCGA-90-7769-01 7 142626640 142626640 C T TRPV5 Missense_Mutation p.A124T 0.42 deleterious(0) probably_damaging(0.942) TCGA-90-7769-01 7 143175659 143175659 G T TAS2R41 Missense_Mutation p.A232S 0.22 deleterious(0) probably_damaging(1) TCGA-90-7769-01 7 150163917 150163917 C G GIMAP8 Missense_Mutation p.T44R 0.25 tolerated(0.05) benign(0.001) TCGA-90-7769-01 7 154767692 154767692 T C PAXIP1 Missense_Mutation p.N263S 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.816) TCGA-90-7769-01 7 154862656 154862656 C T HTR5A Missense_Mutation p.S16F 0.23 deleterious(0.01) benign(0.172) TCGA-90-7769-01 7 157000167 157000167 A T UBE3C Silent p.P498P 0.25 TCGA-90-7769-01 7 157046950 157046950 G A UBE3C Missense_Mutation p.G966S 0.22 deleterious(0) possibly_damaging(0.795) TCGA-90-7769-01 7 21920391 21920391 C T DNAH11 Silent p.A4096A 0.13 TCGA-90-7769-01 7 22769223 22769223 C G IL6 Missense_Mutation p.Q139E 0.09 tolerated(0.26) benign(0.002) TCGA-90-7769-01 7 23757107 23757107 A G STK31 Missense_Mutation p.N53S 0.13 tolerated(1) benign(0.002) TCGA-90-7769-01 7 27211771 27211771 G A HOXA10 Missense_Mutation p.A327V 0.33 deleterious(0.02) possibly_damaging(0.546) TCGA-90-7769-01 7 31008549 31008549 T C GHRHR Missense_Mutation p.L53P 0.33 tolerated(0.27) benign(0.008) TCGA-90-7769-01 7 31009518 31009518 C A GHRHR Missense_Mutation p.S102Y 0.23 deleterious(0) probably_damaging(0.988) TCGA-90-7769-01 7 4056936 4056936 G T SDK1 Missense_Mutation p.G852C 0.14 deleterious(0) probably_damaging(1) TCGA-90-7769-01 7 42972057 42972057 G A MRPL32 Nonsense_Mutation p.W24* 0.36 TCGA-90-7769-01 7 43484706 43484706 C A HECW1 Silent p.A645A 0.20 TCGA-90-7769-01 7 44156778 44156778 C A POLD2 Missense_Mutation p.A179S 0.35 tolerated(0.17) benign(0.08) TCGA-90-7769-01 7 48443328 48443328 A T ABCA13 Silent p.R3974R 0.43 TCGA-90-7769-01 7 4874574 4874574 C A RADIL Missense_Mutation p.Q360H 0.27 tolerated(0.07) possibly_damaging(0.646) TCGA-90-7769-01 7 6048705 6048705 A T PMS2 5'UTR 0.13 TCGA-90-7769-01 7 63982089 63982089 T A ZNF680 Missense_Mutation p.K348I 0.25 deleterious(0) probably_damaging(0.952) TCGA-90-7769-01 7 64864559 64864559 G C ZNF92 Missense_Mutation p.C511S 0.26 deleterious(0.02) probably_damaging(1) TCGA-90-7769-01 7 65557622 65557622 C T ASL Silent p.L408L 0.27 TCGA-90-7769-01 7 6731400 6731400 C A ZNF12 Silent p.S391S 0.30 TCGA-90-7769-01 7 71177183 71177183 C T WBSCR17 3'UTR 0.34 TCGA-90-7769-01 7 72683294 72683294 G C GTF2IRD2P1 RNA 0.12 TCGA-90-7769-01 7 77003388 77003388 T A GSAP Silent p.T290T 0.16 TCGA-90-7769-01 7 82435031 82435032 - C PCLO Frame_Shift_Ins p.E4969Gfs*3 0.25 TCGA-90-7769-01 7 8257964 8257964 G T ICA1 Missense_Mutation p.L184I 0.05 tolerated(0.1) benign(0.168) TCGA-90-7769-01 7 82580447 82580447 C T PCLO Missense_Mutation p.D3153N 0.18 unknown(0) TCGA-90-7769-01 7 86544106 86544106 T C KIAA1324L Missense_Mutation p.H555R 0.23 deleterious(0) possibly_damaging(0.481) TCGA-90-7769-01 7 92762605 92762605 T G SAMD9L Missense_Mutation p.S894R 0.41 tolerated(0.24) benign(0.008) TCGA-90-7769-01 7 92838160 92838160 C A HEPACAM2 Missense_Mutation p.D249Y 0.15 deleterious(0.01) probably_damaging(0.945) TCGA-90-7769-01 7 95616392 95616392 T A DYNC1I1 Silent p.L273L 0.38 TCGA-90-7769-01 7 99565956 99565956 A T AZGP1 Silent p.I145I 0.42 TCGA-90-7769-01 8 103305863 103305863 G A UBR5 Missense_Mutation p.P1520L 0.05 tolerated(0.45) probably_damaging(0.991) TCGA-90-7769-01 8 10555329 10555329 C A C8orf74 Silent p.A154A 0.23 TCGA-90-7769-01 8 113504897 113504897 G T CSMD3 Missense_Mutation p.S1700Y 0.13 deleterious(0) probably_damaging(0.929) TCGA-90-7769-01 8 117868934 117868934 C A RAD21 Missense_Mutation p.L255F 0.47 tolerated(0.12) benign(0.005) TCGA-90-7769-01 8 124219575 124219575 C A FAM83A Missense_Mutation p.R318S 0.30 tolerated(0.99) benign(0.002) TCGA-90-7769-01 8 124516920 124516920 A T FBXO32 Missense_Mutation p.V301D 0.23 tolerated(0.43) benign(0.068) TCGA-90-7769-01 8 124664600 124664600 G A KLHL38 Silent p.L189L 0.39 TCGA-90-7769-01 8 125025764 125025764 C A FER1L6 Silent p.R639R 0.33 TCGA-90-7769-01 8 12943925 12943925 G T DLC1 Missense_Mutation p.T1447N 0.48 deleterious(0.02) probably_damaging(0.94) TCGA-90-7769-01 8 133669135 133669135 T C LRRC6 Missense_Mutation p.K66R 0.13 deleterious(0) possibly_damaging(0.856) TCGA-90-7769-01 8 139603732 139603732 G C COL22A1 Missense_Mutation p.A1543G 0.31 unknown(0) TCGA-90-7769-01 8 139825250 139825250 G T COL22A1 Silent p.R420R 0.29 TCGA-90-7769-01 8 143562905 143562905 C T BAI1 Nonsense_Mutation p.R655* 0.25 TCGA-90-7769-01 8 20107725 20107725 G A LZTS1 Silent p.T433T 0.25 TCGA-90-7769-01 8 2017472 2017472 G A MYOM2 Silent p.A243A 0.53 TCGA-90-7769-01 8 27509136 27509136 C T SCARA3 Missense_Mutation p.A73V 0.22 tolerated(0.06) probably_damaging(0.997) TCGA-90-7769-01 8 27925246 27925246 G T NUGGC Missense_Mutation p.L166M 0.15 tolerated(0.07) probably_damaging(0.98) TCGA-90-7769-01 8 39646211 39646211 G C ADAM2 Missense_Mutation p.Q207E 0.16 tolerated(0.36) benign(0.123) TCGA-90-7769-01 8 43147777 43147777 C T POTEA RNA 0.19 TCGA-90-7769-01 8 55540050 55540050 T A RP1 Missense_Mutation p.M1203K 0.58 tolerated(0.12) benign(0.018) TCGA-90-7769-01 8 59410821 59410821 A T CYP7A1 Missense_Mutation p.D96E 0.30 tolerated(0.11) probably_damaging(0.999) TCGA-90-7769-01 8 61769277 61769277 A T CHD7 Missense_Mutation p.T2480S 0.32 benign(0.068) TCGA-90-7769-01 8 62370982 62370982 G T CLVS1 Silent p.T286T 0.21 TCGA-90-7769-01 8 72127935 72127935 G T EYA1 Silent p.A463A 0.32 TCGA-90-7769-01 8 88885206 88885206 C T DCAF4L2 Missense_Mutation p.V332M 0.30 deleterious(0) probably_damaging(0.973) TCGA-90-7769-01 8 90965665 90965665 C T NBN Missense_Mutation p.R551K 0.26 tolerated(1) benign(0) TCGA-90-7769-01 9 104125102 104125102 C A BAAT Missense_Mutation p.A289S 0.17 tolerated(0.72) benign(0.139) TCGA-90-7769-01 9 111727704 111727704 C T CTNNAL1 Missense_Mutation p.M515I 0.19 tolerated(0.21) benign(0.021) TCGA-90-7769-01 9 112705304 112705304 C T PALM2 Missense_Mutation p.H279Y 0.15 tolerated(0.07) benign(0.152) TCGA-90-7769-01 9 115806051 115806051 G A ZFP37 Missense_Mutation p.H283Y 0.22 tolerated(0.16) benign(0.122) TCGA-90-7769-01 9 116130663 116130663 G T BSPRY Missense_Mutation p.G228C 0.17 deleterious(0) probably_damaging(0.99) TCGA-90-7769-01 9 116798610 116798610 A T ZNF618 Missense_Mutation p.Q307L 0.38 deleterious_low_confidence(0) possibly_damaging(0.624) TCGA-90-7769-01 9 117044605 117044605 G A COL27A1 Missense_Mutation p.A1256T 0.18 probably_damaging(0.914) TCGA-90-7769-01 9 120474840 120474840 C A TLR4 Missense_Mutation p.P145H 0.22 deleterious(0.02) possibly_damaging(0.561) TCGA-90-7769-01 9 121929731 121929731 G T BRINP1 Missense_Mutation p.D639E 0.43 tolerated(1) probably_damaging(0.935) TCGA-90-7769-01 9 121930147 121930147 C A BRINP1 Missense_Mutation p.V501F 0.52 deleterious(0) benign(0.201) TCGA-90-7769-01 9 125273735 125273735 G T OR1J2 Missense_Mutation p.G219C 0.25 tolerated_low_confidence(0.07) probably_damaging(0.981) TCGA-90-7769-01 9 131669688 131669688 C T LRRC8A Missense_Mutation p.P82L 0.46 tolerated(0.13) benign(0) TCGA-90-7769-01 9 135202620 135202620 T G SETX Missense_Mutation p.E1455D 0.61 tolerated(0.2) possibly_damaging(0.515) TCGA-90-7769-01 9 17786476 17786476 G A SH3GL2 Silent p.E95E 0.29 TCGA-90-7769-01 9 21971000 21971000 C A CDKN2A Nonsense_Mutation p.E120* 0.78 TCGA-90-7769-01 9 27949489 27949489 T A LINGO2 Missense_Mutation p.K394M 0.37 deleterious(0.01) benign(0.357) TCGA-90-7769-01 9 34521646 34521646 G A ENHO Silent p.N16N 0.39 TCGA-90-7769-01 9 36108095 36108095 G T RECK Nonsense_Mutation p.E567* 0.37 TCGA-90-7769-01 9 79118417 79118417 G A GCNT1 Missense_Mutation p.G374R 0.21 deleterious(0) probably_damaging(1) TCGA-90-7769-01 9 95872979 95872979 C G C9orf89 Missense_Mutation p.R94G 0.23 tolerated(0.6) benign(0.003) TCGA-90-7769-01 X 100417833 100417833 G T CENPI Missense_Mutation p.W716C 0.72 deleterious(0) probably_damaging(0.986) TCGA-90-7769-01 X 102632529 102632529 G C NGFRAP1 Missense_Mutation p.R37P 0.66 deleterious(0.02) benign(0.061) TCGA-90-7769-01 X 104464074 104464074 G A TEX13A Missense_Mutation p.R268W 0.83 deleterious(0) possibly_damaging(0.876) TCGA-90-7769-01 X 117743298 117743298 G T DOCK11 Nonsense_Mutation p.E979* 0.46 TCGA-90-7769-01 X 120181847 120181847 C A GLUD2 Silent p.R103R 0.47 TCGA-90-7769-01 X 123480562 123480562 G T SH2D1A Missense_Mutation p.G24W 0.71 deleterious(0) probably_damaging(1) TCGA-90-7769-01 X 125299202 125299202 C T DCAF12L2 Missense_Mutation p.E236K 0.82 tolerated(0.65) benign(0.047) TCGA-90-7769-01 X 132887679 132887679 C A GPC3 Missense_Mutation p.G288C 0.79 deleterious(0.03) possibly_damaging(0.648) TCGA-90-7769-01 X 135430263 135430263 G A GPR112 Silent p.L1466L 0.78 TCGA-90-7769-01 X 144906381 144906381 G T SLITRK2 Missense_Mutation p.G813V 0.49 deleterious(0.01) benign(0.001) TCGA-90-7769-01 X 147062972 147062972 G T FMR1NB Missense_Mutation p.R17L 0.40 deleterious(0.02) benign(0.005) TCGA-90-7769-01 X 149905133 149905133 C T MTMR1 Missense_Mutation p.H375Y 0.11 deleterious(0.01) benign(0.44) TCGA-90-7769-01 X 30237526 30237526 C A MAGEB2 Missense_Mutation p.P277T 0.65 deleterious(0.01) possibly_damaging(0.708) TCGA-90-7769-01 X 31139933 31139933 C A DMD 3'UTR 0.59 TCGA-90-7769-01 X 37955472 37955473 - G SYTL5 Frame_Shift_Ins p.A351Gfs*11 0.42 TCGA-90-7769-01 X 43601274 43601274 G A MAOA Silent p.G414G 0.93 TCGA-90-7769-01 X 48631890 48631890 C A GLOD5 3'UTR 0.74 TCGA-90-7769-01 X 77913236 77913236 G T ZCCHC5 Missense_Mutation p.P228T 0.55 tolerated(0.07) benign(0.038) TCGA-90-7964-01 10 100219224 100219224 G A HPSE2 3'UTR 0.38 TCGA-90-7964-01 10 102587496 102587496 C A PAX2 3'UTR 0.40 TCGA-90-7964-01 10 102753070 102753070 G C C10orf2 Missense_Mutation p.E620Q 0.31 deleterious(0.03) possibly_damaging(0.737) TCGA-90-7964-01 10 105363019 105363019 C G SH3PXD2A Silent p.L624L 0.26 TCGA-90-7964-01 10 116887408 116887408 T A ATRNL1 Silent p.V181V 0.48 TCGA-90-7964-01 10 121677527 121677527 G T SEC23IP Missense_Mutation p.G575V 0.35 deleterious(0) probably_damaging(1) TCGA-90-7964-01 10 123996969 123996969 C T TACC2 Silent p.I2729I 0.12 TCGA-90-7964-01 10 124742935 124742935 G T PSTK Missense_Mutation p.W219L 0.28 deleterious(0) probably_damaging(1) TCGA-90-7964-01 10 13629025 13629025 C A PRPF18 5'UTR 0.29 TCGA-90-7964-01 10 15254849 15254849 C A FAM171A1 3'UTR 0.43 TCGA-90-7964-01 10 15634228 15634228 T A ITGA8 Nonsense_Mutation p.R763* 0.44 TCGA-90-7964-01 10 16882419 16882419 C T CUBN Silent p.P3314P 0.05 TCGA-90-7964-01 10 26505738 26505738 G C GAD2 5'UTR 0.27 TCGA-90-7964-01 10 28970451 28970451 C T BAMBI Missense_Mutation p.S114F 0.20 tolerated(0.61) benign(0.037) TCGA-90-7964-01 10 44053368 44053368 A T ZNF239 Missense_Mutation p.C54S 0.35 tolerated(1) benign(0) TCGA-90-7964-01 10 46959998 46959998 G T SYT15 3'Flank 0.16 TCGA-90-7964-01 10 55755468 55755468 G T PCDH15 Missense_Mutation p.P937T 0.31 deleterious(0.04) probably_damaging(0.997) TCGA-90-7964-01 10 61832196 61832196 C T ANK3 Missense_Mutation p.E2815K 0.18 benign(0.023) TCGA-90-7964-01 10 69881553 69881553 G C MYPN Missense_Mutation p.D120H 0.33 deleterious(0.01) benign(0.284) TCGA-90-7964-01 10 73594133 73594133 G C PSAP Missense_Mutation p.T57R 0.14 tolerated(0.05) benign(0.021) TCGA-90-7964-01 10 75230525 75230525 C T PPP3CB Missense_Mutation p.R301K 0.32 tolerated(0.26) benign(0.025) TCGA-90-7964-01 10 75558019 75558019 G A ZSWIM8 Silent p.L1328L 0.30 TCGA-90-7964-01 10 81037035 81037035 G T ZMIZ1 Missense_Mutation p.Q126H 0.34 possibly_damaging(0.823) TCGA-90-7964-01 10 85982002 85982002 C A LRIT2 Missense_Mutation p.G443C 0.29 deleterious(0) probably_damaging(0.998) TCGA-90-7964-01 10 89472933 89472933 C G PAPSS2 Missense_Mutation p.H83D 0.25 tolerated(0.2) benign(0.061) TCGA-90-7964-01 10 92672665 92672665 G C ANKRD1 Silent p.L306L 0.28 TCGA-90-7964-01 10 97007071 97007071 C - PDLIM1 Frame_Shift_Del p.V196Ffs*11 0.20 TCGA-90-7964-01 11 108005006 108005006 A C ACAT1 Missense_Mutation p.E99D 0.23 tolerated(0.22) benign(0.046) TCGA-90-7964-01 11 119549463 119549463 T A PVRL1 Missense_Mutation p.Q31L 0.31 deleterious(0) probably_damaging(0.999) TCGA-90-7964-01 11 124135465 124135465 C G OR8G5 Missense_Mutation p.T248S 0.24 deleterious(0.05) benign(0.35) TCGA-90-7964-01 11 132290184 132290184 G C OPCML Missense_Mutation p.P314R 0.31 deleterious(0.01) probably_damaging(0.994) TCGA-90-7964-01 11 15134051 15134051 C A INSC Missense_Mutation p.S12R 0.38 tolerated_low_confidence(0.07) benign(0) TCGA-90-7964-01 11 17483283 17483283 A G ABCC8 Silent p.N223N 0.36 TCGA-90-7964-01 11 19955765 19955765 C G NAV2 Missense_Mutation p.Q682E 0.32 deleterious(0) benign(0.066) TCGA-90-7964-01 11 31312246 31312246 C A DCDC1 Missense_Mutation p.G303V 0.41 deleterious(0.02) probably_damaging(0.959) TCGA-90-7964-01 11 33731675 33731675 G C CD59 Silent p.P128P 0.56 TCGA-90-7964-01 11 34130304 34130304 C T NAT10 Missense_Mutation p.H42Y 0.18 tolerated(1) benign(0.01) TCGA-90-7964-01 11 47290119 47290119 C A NR1H3 Silent p.R406R 0.17 TCGA-90-7964-01 11 48239011 48239011 T C OR4B1 Missense_Mutation p.I217T 0.22 tolerated(0.27) possibly_damaging(0.515) TCGA-90-7964-01 11 5444251 5444251 T C OR51Q1 Missense_Mutation p.V274A 0.23 tolerated(0.07) possibly_damaging(0.734) TCGA-90-7964-01 11 55063034 55063034 C A TRIM51HP RNA 0.22 TCGA-90-7964-01 11 5530590 5530590 C A UBQLN3 Missense_Mutation p.G67C 0.10 deleterious(0) probably_damaging(1) TCGA-90-7964-01 11 56113628 56113628 C T OR8K1 Silent p.L38L 0.26 TCGA-90-7964-01 11 56128416 56128416 G A OR8J1 Missense_Mutation p.E232K 0.30 tolerated(0.08) benign(0.33) TCGA-90-7964-01 11 57070095 57070095 C G TNKS1BP1 Missense_Mutation p.W1507C 0.17 tolerated(0.28) benign(0.004) TCGA-90-7964-01 11 57076766 57076766 G C TNKS1BP1 Missense_Mutation p.S1140C 0.25 deleterious(0.05) possibly_damaging(0.891) TCGA-90-7964-01 11 57077925 57077925 G C TNKS1BP1 Missense_Mutation p.Q754E 0.26 deleterious(0.04) benign(0.288) TCGA-90-7964-01 11 57080136 57080136 G C TNKS1BP1 Missense_Mutation p.P676A 0.32 tolerated(0.91) benign(0) TCGA-90-7964-01 11 58979285 58979285 C T MPEG1 Missense_Mutation p.D352N 0.25 tolerated(0.39) benign(0.015) TCGA-90-7964-01 11 59349008 59349008 G C OSBP Missense_Mutation p.F566L 0.34 deleterious(0.04) probably_damaging(0.998) TCGA-90-7964-01 11 60229923 60229923 G T MS4A1 Missense_Mutation p.G26C 0.43 tolerated(0.2) benign(0.336) TCGA-90-7964-01 11 6129527 6129527 C A OR56B4 Missense_Mutation p.H173Q 0.46 tolerated(0.26) benign(0.038) TCGA-90-7964-01 11 61404858 61404858 C T RPLP0P2 RNA 0.15 TCGA-90-7964-01 11 66468374 66468374 G A SPTBN2 Missense_Mutation p.R1066W 0.14 deleterious(0) probably_damaging(0.94) TCGA-90-7964-01 11 67201734 67201734 C T RPS6KB2 Silent p.F345F 0.29 TCGA-90-7964-01 11 68031177 68031177 G C C11orf24 Missense_Mutation p.A20G 0.30 tolerated(0.26) unknown(0) TCGA-90-7964-01 11 71945345 71945345 C G INPPL1 Missense_Mutation p.Q745E 0.24 tolerated(0.11) benign(0.039) TCGA-90-7964-01 11 74322556 74322556 G T POLD3 Missense_Mutation p.A78S 0.42 tolerated(0.44) possibly_damaging(0.721) TCGA-90-7964-01 11 76891417 76891417 C A MYO7A Intron 0.37 TCGA-90-7964-01 11 7817582 7817582 C G OR5P2 Missense_Mutation p.R303T 0.22 deleterious(0.02) benign(0.064) TCGA-90-7964-01 11 93913282 93913282 A G PANX1 Missense_Mutation p.I354V 0.31 tolerated(0.12) benign(0.265) TCGA-90-7964-01 11 94277437 94277437 G A FUT4 Silent p.A46A 0.30 TCGA-90-7964-01 11 95712922 95712922 C T MAML2 Missense_Mutation p.M887I 0.35 unknown(0) TCGA-90-7964-01 12 108634216 108634216 G T WSCD2 Missense_Mutation p.A414S 0.30 tolerated(0.16) benign(0.01) TCGA-90-7964-01 12 111748481 111748481 A T CUX2 Missense_Mutation p.Q632L 0.39 deleterious(0) benign(0.071) TCGA-90-7964-01 12 113384670 113384670 A G OAS3 Silent p.R253R 0.29 TCGA-90-7964-01 12 116434406 116434406 C A MED13L Silent p.P957P 0.37 TCGA-90-7964-01 12 119617188 119617188 C G HSPB8 Missense_Mutation p.S24C 0.26 tolerated(0.16) possibly_damaging(0.608) TCGA-90-7964-01 12 123286042 123286042 C T CCDC62 Missense_Mutation p.S450L 0.23 tolerated(0.37) benign(0.009) TCGA-90-7964-01 12 125397742 125397742 C A UBC Missense_Mutation p.Q192H 0.29 tolerated(0.12) possibly_damaging(0.558) TCGA-90-7964-01 12 15793747 15793747 G A EPS8 Nonsense_Mutation p.R571* 0.24 TCGA-90-7964-01 12 21472368 21472368 C G SLCO1A2 Intron 0.35 TCGA-90-7964-01 12 48539359 48539359 C T PFKM Silent p.P808P 0.21 TCGA-90-7964-01 12 49087566 49087566 T C CCNT1 Silent p.P477P 0.32 TCGA-90-7964-01 12 49176747 49176747 C G ADCY6 Silent p.A157A 0.27 TCGA-90-7964-01 12 52501255 52501255 G T AC078864.1 3'Flank 0.21 TCGA-90-7964-01 12 52761003 52761003 C A KRT85 Missense_Mutation p.G63W 0.44 deleterious(0.02) probably_damaging(0.967) TCGA-90-7964-01 12 53084999 53084999 G T KRT77 Missense_Mutation p.Q563K 0.43 tolerated_low_confidence(0.1) unknown(0) TCGA-90-7964-01 12 54405308 54405308 C A HOXC8 3'UTR 0.21 TCGA-90-7964-01 12 57849443 57849443 C A INHBE Missense_Mutation p.L42M 0.31 tolerated(0.07) probably_damaging(0.935) TCGA-90-7964-01 12 60168620 60168620 G T SLC16A7 Nonsense_Mutation p.G182* 0.37 TCGA-90-7964-01 12 6125362 6125362 G A VWF Missense_Mutation p.S1783L 0.26 deleterious(0.01) possibly_damaging(0.849) TCGA-90-7964-01 12 70087653 70087653 C T BEST3 Nonsense_Mutation p.W94* 0.36 TCGA-90-7964-01 12 7047992 7047992 G A ATN1 Missense_Mutation p.E956K 0.35 probably_damaging(0.987) TCGA-90-7964-01 12 7456985 7456985 G - ACSM4 Frame_Shift_Del p.G20Afs*14 0.29 TCGA-90-7964-01 12 75785088 75785088 G T GLIPR1L2 Silent p.L64L 0.43 TCGA-90-7964-01 12 75807393 75807393 T C GLIPR1L2 Missense_Mutation p.S166P 0.30 deleterious(0) probably_damaging(0.987) TCGA-90-7964-01 12 7632490 7632490 G A CD163 Missense_Mutation p.T1149I 0.22 tolerated(0.22) benign(0.108) TCGA-90-7964-01 12 7842942 7842942 A G GDF3 Silent p.D209D 0.28 TCGA-90-7964-01 12 7945662 7945662 A T NANOG Nonsense_Mutation p.K90* 0.28 TCGA-90-7964-01 12 80704438 80704438 C G OTOGL Missense_Mutation p.N1118K 0.27 tolerated(0.08) benign(0.338) TCGA-90-7964-01 12 81239561 81239561 T C LIN7A Missense_Mutation p.E144G 0.33 deleterious(0) benign(0.186) TCGA-90-7964-01 12 83526170 83526170 A G TMTC2 3'UTR 0.26 TCGA-90-7964-01 12 8758019 8758019 G T AICDA Silent p.G73G 0.42 TCGA-90-7964-01 12 91445096 91445096 C G KERA 3'UTR 0.13 TCGA-90-7964-01 12 97328826 97328826 A C NEDD1 Missense_Mutation p.T195P 0.22 deleterious(0.02) probably_damaging(0.996) TCGA-90-7964-01 13 103703688 103703688 C A SLC10A2 Missense_Mutation p.W227L 0.34 tolerated(0.85) benign(0.084) TCGA-90-7964-01 13 113980069 113980069 C G GRTP1 Missense_Mutation p.L276F 0.44 tolerated(0.08) benign(0.006) TCGA-90-7964-01 13 114504681 114504681 G T TMEM255B Missense_Mutation p.V189L 0.55 deleterious(0) possibly_damaging(0.876) TCGA-90-7964-01 13 23904919 23904919 C A SACS Missense_Mutation p.A4366S 0.48 benign(0.012) TCGA-90-7964-01 13 23904920 23904920 C A SACS Missense_Mutation p.Q4365H 0.50 probably_damaging(0.986) TCGA-90-7964-01 13 48528401 48528402 - A SUCLA2 Frame_Shift_Ins p.L327Ffs*21 0.30 TCGA-90-7964-01 13 61986653 61986653 C A PCDH20 Missense_Mutation p.D527Y 0.41 deleterious(0) probably_damaging(1) TCGA-90-7964-01 14 105617728 105617728 C T JAG2 Missense_Mutation p.D387N 0.31 tolerated(0.23) possibly_damaging(0.453) TCGA-90-7964-01 14 106110197 106110197 C T IGHG2 Missense_Mutation p.V141M 0.28 tolerated(0.16) benign(0.234) TCGA-90-7964-01 14 106573250 106573250 C T IGHV3-11 Missense_Mutation p.V112M 0.39 tolerated_low_confidence(0.2) benign(0.173) TCGA-90-7964-01 14 21461325 21461325 G T METTL17 Missense_Mutation p.G193C 0.26 deleterious(0) probably_damaging(1) TCGA-90-7964-01 14 23857870 23857870 C A MYH6 Intron 0.25 TCGA-90-7964-01 14 23900863 23900863 G C MYH7 Missense_Mutation p.I221M 0.34 deleterious(0.04) probably_damaging(0.991) TCGA-90-7964-01 14 31852830 31852830 T A HEATR5A Missense_Mutation p.H205L 0.25 tolerated(1) benign(0) TCGA-90-7964-01 14 42355968 42355968 C A LRFN5 Missense_Mutation p.P47Q 0.45 deleterious(0) probably_damaging(0.954) TCGA-90-7964-01 14 42356523 42356523 C A LRFN5 Missense_Mutation p.T232N 0.39 tolerated(0.2) benign(0.206) TCGA-90-7964-01 14 53004343 53004343 C T TXNDC16 Silent p.K97K 0.23 TCGA-90-7964-01 14 53177862 53177862 A G PSMC6 Missense_Mutation p.D115G 0.27 deleterious(0) probably_damaging(0.956) TCGA-90-7964-01 14 58599974 58599974 G C C14orf37 Silent p.L485L 0.26 TCGA-90-7964-01 14 60581897 60581897 T C PCNXL4 Missense_Mutation p.Y125H 0.41 tolerated(0.35) benign(0.002) TCGA-90-7964-01 14 61519170 61519170 A G SLC38A6 Intron 0.24 TCGA-90-7964-01 14 76241887 76241887 G T TTLL5 Missense_Mutation p.V733L 0.32 tolerated(0.61) benign(0.002) TCGA-90-7964-01 14 80971342 80971342 C A CEP128 Missense_Mutation p.G1032C 0.28 tolerated(0.13) possibly_damaging(0.694) TCGA-90-7964-01 14 88401141 88401141 C T GALC Missense_Mutation p.A665T 0.38 deleterious(0) possibly_damaging(0.881) TCGA-90-7964-01 14 88407780 88407780 C A GALC Missense_Mutation p.W598L 0.28 deleterious(0.01) probably_damaging(0.964) TCGA-90-7964-01 14 89307420 89307420 C G TTC8 Silent p.L123L 0.31 TCGA-90-7964-01 14 94914631 94914631 A G SERPINA11 Missense_Mutation p.Y161H 0.31 deleterious(0) probably_damaging(1) TCGA-90-7964-01 14 95903166 95903166 C T SYNE3 Silent p.S843S 0.26 TCGA-90-7964-01 15 23811029 23811029 G T MKRN3 Missense_Mutation p.V34F 0.31 tolerated(0.65) benign(0.005) TCGA-90-7964-01 15 35083333 35083333 A G ACTC1 Silent p.P324P 0.31 TCGA-90-7964-01 15 35274618 35274618 A C ZNF770 Missense_Mutation p.L340V 0.43 deleterious(0.02) probably_damaging(0.994) TCGA-90-7964-01 15 40544715 40544715 C T C15orf56 Missense_Mutation p.R86Q 0.18 deleterious_low_confidence(0.03) benign(0.417) TCGA-90-7964-01 15 42641685 42641685 G C GANC Silent p.L841L 0.24 TCGA-90-7964-01 15 42840305 42840305 C T LRRC57 Silent p.L74L 0.18 TCGA-90-7964-01 15 48433367 48433367 C A SLC24A5 Missense_Mutation p.T379K 0.18 deleterious(0) probably_damaging(0.969) TCGA-90-7964-01 15 52353648 52353648 G A MAPK6 Missense_Mutation p.D340N 0.26 deleterious(0.05) benign(0.077) TCGA-90-7964-01 15 54305895 54305895 G A UNC13C Silent p.G265G 0.33 TCGA-90-7964-01 15 60797771 60797771 T C RORA Missense_Mutation p.E326G 0.51 deleterious(0) benign(0.402) TCGA-90-7964-01 15 65685775 65685775 A C IGDCC4 Silent p.A603A 0.20 TCGA-90-7964-01 15 65994836 65994836 G A DENND4A Missense_Mutation p.A746V 0.33 deleterious(0) probably_damaging(0.996) TCGA-90-7964-01 15 74468005 74468005 G T ISLR Missense_Mutation p.W269L 0.33 deleterious(0) probably_damaging(0.998) TCGA-90-7964-01 15 77407024 77407024 C A PEAK1 Missense_Mutation p.R1572L 0.26 deleterious(0) probably_damaging(0.976) TCGA-90-7964-01 15 86814939 86814939 T A AGBL1 Splice_Site p.X646_splice 0.27 TCGA-90-7964-01 15 89402040 89402040 C A ACAN Missense_Mutation p.T2075K 0.28 deleterious(0.02) benign(0.416) TCGA-90-7964-01 15 91310199 91310199 C T BLM Silent p.L751L 0.28 TCGA-90-7964-01 15 99903426 99903426 G T LRRC28 Missense_Mutation p.K329N 0.37 deleterious(0.04) possibly_damaging(0.478) TCGA-90-7964-01 16 10851861 10851861 G T NUBP1 Missense_Mutation p.A195S 0.28 deleterious(0.04) benign(0.438) TCGA-90-7964-01 16 11051667 11051667 A G CLEC16A Missense_Mutation p.T37A 0.26 tolerated(0.2) benign(0.053) TCGA-90-7964-01 16 19884054 19884054 C T GPRC5B Silent p.G38G 0.28 TCGA-90-7964-01 16 20442387 20442387 G T ACSM5 Missense_Mutation p.D400Y 0.35 deleterious(0.02) probably_damaging(0.969) TCGA-90-7964-01 16 20976628 20976628 G A DNAH3 Missense_Mutation p.R2860W 0.28 deleterious(0) probably_damaging(1) TCGA-90-7964-01 16 22137498 22137498 G T VWA3A Splice_Site p.X511_splice 0.42 TCGA-90-7964-01 16 22337554 22337554 A G POLR3E Silent p.L607L 0.23 TCGA-90-7964-01 16 223513 223513 C A HBA2 Missense_Mutation p.P115T 0.22 deleterious(0.01) benign(0.117) TCGA-90-7964-01 16 24582398 24582398 G T RBBP6 Missense_Mutation p.Q1337H 0.48 deleterious_low_confidence(0) unknown(0) TCGA-90-7964-01 16 31277351 31277351 G T ITGAM Missense_Mutation p.A104S 0.38 deleterious(0) possibly_damaging(0.725) TCGA-90-7964-01 16 31332648 31332648 G A ITGAM Silent p.L599L 0.35 TCGA-90-7964-01 16 31368350 31368350 A T ITGAX Splice_Site p.X83_splice 0.21 TCGA-90-7964-01 16 47733198 47733198 A G PHKB Missense_Mutation p.Y1068C 0.36 deleterious(0) probably_damaging(0.999) TCGA-90-7964-01 16 48250134 48250134 A T ABCC11 Missense_Mutation p.V281E 0.27 tolerated(0.12) benign(0.311) TCGA-90-7964-01 16 53283815 53283815 G C CHD9 Missense_Mutation p.R1233T 0.23 probably_damaging(0.999) TCGA-90-7964-01 16 55844545 55844545 G A CES1 Missense_Mutation p.T401I 0.30 tolerated(0.79) benign(0.003) TCGA-90-7964-01 16 57101310 57101310 G A NLRC5 Missense_Mutation p.C1445Y 0.27 tolerated(0.44) benign(0.052) TCGA-90-7964-01 16 57416453 57416453 G C CX3CL1 Missense_Mutation p.A235P 0.34 tolerated(0.06) benign(0.36) TCGA-90-7964-01 16 67478594 67478594 G A ATP6V0D1 Silent p.I106I 0.33 TCGA-90-7964-01 16 67645439 67645439 G T CTCF Missense_Mutation p.G235V 0.34 tolerated(0.2) possibly_damaging(0.829) TCGA-90-7964-01 16 67679531 67679531 C T RLTPR Silent p.V43V 0.18 TCGA-90-7964-01 16 70841704 70841704 T C HYDIN Missense_Mutation p.M5049V 0.24 benign(0.001) TCGA-90-7964-01 16 74955990 74955990 A T WDR59 Missense_Mutation p.N247K 0.34 tolerated(0.23) benign(0.114) TCGA-90-7964-01 16 75513253 75513253 G A CHST6 Silent p.F158F 0.35 TCGA-90-7964-01 16 76501361 76501361 G T CNTNAP4 Missense_Mutation p.Q459H 0.22 deleterious(0) probably_damaging(0.999) TCGA-90-7964-01 16 77389936 77389936 C G ADAMTS18 Missense_Mutation p.R454T 0.34 tolerated(0.09) benign(0.091) TCGA-90-7964-01 16 84256395 84256395 C T KCNG4 Missense_Mutation p.E330K 0.31 deleterious(0) probably_damaging(0.997) TCGA-90-7964-01 16 89259935 89259935 G T CDH15 Missense_Mutation p.G638V 0.22 tolerated(0.07) benign(0.29) TCGA-90-7964-01 16 89724021 89724021 C T CHMP1A 5'UTR 0.21 TCGA-90-7964-01 16 89846284 89846284 C T FANCA Missense_Mutation p.E570K 0.28 deleterious(0) benign(0.292) TCGA-90-7964-01 17 10265743 10265743 C A MYH13 Missense_Mutation p.M94I 0.36 deleterious(0.02) probably_damaging(0.977) TCGA-90-7964-01 17 10265777 10265777 G T MYH13 Missense_Mutation p.P83H 0.39 deleterious(0) probably_damaging(0.999) TCGA-90-7964-01 17 11532807 11532807 T A DNAH9 Missense_Mutation p.L475Q 0.43 probably_damaging(0.996) TCGA-90-7964-01 17 18022509 18022509 C T MYO15A Missense_Mutation p.T132M 0.46 probably_damaging(0.996) TCGA-90-7964-01 17 21731457 21731457 G T UBBP4 Missense_Mutation p.V178L 0.42 deleterious(0.05) possibly_damaging(0.853) TCGA-90-7964-01 17 29490341 29490341 A G NF1 Silent p.L142L 0.37 TCGA-90-7964-01 17 34941875 34941875 A G GGNBP2 Missense_Mutation p.K454R 0.26 tolerated(0.08) benign(0.086) TCGA-90-7964-01 17 36966020 36966020 T C CWC25 Splice_Site p.X209_splice 0.55 TCGA-90-7964-01 17 3716431 3716431 C A C17orf85 Missense_Mutation p.Q590H 0.48 deleterious_low_confidence(0) possibly_damaging(0.548) TCGA-90-7964-01 17 39037010 39037010 C T KRT20 Silent p.E162E 0.23 TCGA-90-7964-01 17 39086294 39086294 G A KRT23 Silent p.L178L 0.39 TCGA-90-7964-01 17 40729309 40729309 C G PSMC3IP Missense_Mutation p.K49N 0.28 deleterious(0) probably_damaging(0.996) TCGA-90-7964-01 17 43013496 43013496 C A KIF18B Missense_Mutation p.D73Y 0.48 deleterious(0) probably_damaging(1) TCGA-90-7964-01 17 46607003 46607003 G T HOXB1 Missense_Mutation p.A271D 0.31 deleterious(0.01) benign(0.206) TCGA-90-7964-01 17 56350923 56350923 G T MPO Silent p.A491A 0.34 TCGA-90-7964-01 17 56357369 56357369 C A MPO Missense_Mutation p.K85N 0.29 deleterious(0.03) benign(0.089) TCGA-90-7964-01 17 58346823 58346823 C T USP32 Missense_Mutation p.E267K 0.15 deleterious(0) probably_damaging(0.952) TCGA-90-7964-01 17 62223701 62223701 G A TEX2 3'Flank 0.27 TCGA-90-7964-01 17 71228501 71228501 C A FAM104A 5'UTR 0.50 TCGA-90-7964-01 17 7343077 7343077 G A FGF11 Silent p.L46L 0.42 TCGA-90-7964-01 17 73664646 73664646 C T SAP30BP Missense_Mutation p.R53C 0.32 deleterious_low_confidence(0) benign(0.022) TCGA-90-7964-01 17 73723349 73723349 A G ITGB4 Missense_Mutation p.T52A 0.28 tolerated(0.3) benign(0.019) TCGA-90-7964-01 17 73872891 73872891 C T TRIM47 Missense_Mutation p.E227K 0.20 tolerated(0.16) benign(0.073) TCGA-90-7964-01 17 73922135 73922135 C G FBF1 Missense_Mutation p.D268H 0.23 deleterious(0) probably_damaging(0.919) TCGA-90-7964-01 17 73922210 73922210 C G FBF1 Missense_Mutation p.E243Q 0.20 deleterious(0.02) possibly_damaging(0.802) TCGA-90-7964-01 17 73922442 73922442 C T FBF1 Missense_Mutation p.D207N 0.20 deleterious(0.04) probably_damaging(0.964) TCGA-90-7964-01 17 73922445 73922445 C T FBF1 Missense_Mutation p.D206N 0.21 deleterious(0) possibly_damaging(0.844) TCGA-90-7964-01 17 7507089 7507089 C T FXR2 Silent p.E145E 0.37 TCGA-90-7964-01 17 78199685 78199687 ACC - SLC26A11 In_Frame_Del p.H189del 0.31 TCGA-90-7964-01 17 7849292 7849292 A T CNTROB Missense_Mutation p.T661S 0.41 deleterious(0.02) benign(0.325) TCGA-90-7964-01 17 9846520 9846520 C T GAS7 Missense_Mutation p.V217M 0.40 deleterious(0.04) benign(0.031) TCGA-90-7964-01 18 14105043 14105043 C A ZNF519 Missense_Mutation p.R499M 0.25 tolerated(0.09) benign(0.094) TCGA-90-7964-01 18 19433125 19433125 G T MIB1 Missense_Mutation p.D871Y 0.32 deleterious(0.02) benign(0.109) TCGA-90-7964-01 18 19995515 19995515 C A CTAGE1 3'UTR 0.19 TCGA-90-7964-01 18 22806564 22806564 G C ZNF521 Missense_Mutation p.Q440E 0.20 deleterious(0.01) probably_damaging(0.991) TCGA-90-7964-01 18 43223994 43223994 T C SLC14A2 Missense_Mutation p.I407T 0.33 tolerated(0.13) benign(0.119) TCGA-90-7964-01 18 43492296 43492296 C A EPG5 Missense_Mutation p.K1314N 0.29 deleterious(0) probably_damaging(0.978) TCGA-90-7964-01 18 56149090 56149090 C T ALPK2 Missense_Mutation p.A2160T 0.43 tolerated(0.53) benign(0) TCGA-90-7964-01 18 56412940 56412940 G A MALT1 Missense_Mutation p.E652K 0.08 deleterious(0.03) probably_damaging(0.997) TCGA-90-7964-01 18 59483143 59483143 A T RNF152 Missense_Mutation p.I185N 0.41 deleterious(0) probably_damaging(0.986) TCGA-90-7964-01 18 7231187 7231187 G T LRRC30 Missense_Mutation p.R17S 0.39 tolerated_low_confidence(0.78) benign(0.001) TCGA-90-7964-01 18 74692353 74692353 G A RP11-862L9.3 5'Flank 0.04 TCGA-90-7964-01 18 8609899 8609899 G C RAB12 Silent p.L58L 0.35 TCGA-90-7964-01 19 1007862 1007862 C A GRIN3B Missense_Mutation p.P736T 0.63 deleterious(0) probably_damaging(0.992) TCGA-90-7964-01 19 10088299 10088299 C T COL5A3 Missense_Mutation p.V1033I 0.39 benign(0.353) TCGA-90-7964-01 19 10610534 10610534 T C KEAP1 Missense_Mutation p.H59R 0.44 deleterious(0.01) probably_damaging(0.998) TCGA-90-7964-01 19 10663652 10663652 C G ATG4D Missense_Mutation p.S445C 0.28 deleterious(0) possibly_damaging(0.606) TCGA-90-7964-01 19 10663684 10663684 C G ATG4D Missense_Mutation p.R456G 0.30 tolerated(0.13) benign(0.123) TCGA-90-7964-01 19 11363470 11363470 G A DOCK6 Silent p.I99I 0.47 TCGA-90-7964-01 19 11363471 11363471 A T DOCK6 Missense_Mutation p.I99N 0.47 deleterious(0) benign(0.217) TCGA-90-7964-01 19 11687649 11687649 C G ACP5 Missense_Mutation p.E91Q 0.33 deleterious(0.01) probably_damaging(0.988) TCGA-90-7964-01 19 14557359 14557359 C T PKN1 Missense_Mutation p.P205L 0.27 tolerated(0.66) benign(0.002) TCGA-90-7964-01 19 14562687 14562687 C T PKN1 Silent p.T345T 0.33 TCGA-90-7964-01 19 14568938 14568938 C T PKN1 Silent p.L427L 0.42 TCGA-90-7964-01 19 14574541 14574541 C T PKN1 Silent p.F500F 0.41 TCGA-90-7964-01 19 16536024 16536024 C G EPS15L1 Missense_Mutation p.G221A 0.39 tolerated(0.1) possibly_damaging(0.899) TCGA-90-7964-01 19 17729256 17729256 C A UNC13A Missense_Mutation p.V1462F 0.75 deleterious(0) possibly_damaging(0.784) TCGA-90-7964-01 19 17763469 17763469 C T UNC13A Silent p.E470E 0.47 TCGA-90-7964-01 19 22785277 22785277 G A AC011467.1 5'Flank 0.56 TCGA-90-7964-01 19 31025844 31025844 C G ZNF536 Missense_Mutation p.P754R 0.21 deleterious(0.01) probably_damaging(0.931) TCGA-90-7964-01 19 33202905 33202905 C T NUDT19 3'UTR 0.26 TCGA-90-7964-01 19 33878221 33878221 C G PEPD 3'UTR 0.34 TCGA-90-7964-01 19 36205553 36205553 C - ZBTB32 Frame_Shift_Del p.S10Afs*11 0.36 TCGA-90-7964-01 19 36340005 36340005 C A NPHS1 Missense_Mutation p.Q295H 0.38 tolerated(0.15) benign(0.005) TCGA-90-7964-01 19 37879612 37879612 G T ZNF527 Missense_Mutation p.G221C 0.17 tolerated(1) benign(0.002) TCGA-90-7964-01 19 40354033 40354033 C A FCGBP 3'UTR 0.42 TCGA-90-7964-01 19 43428893 43428893 G T PSG7 3'UTR 0.15 TCGA-90-7964-01 19 43920060 43920060 C A TEX101 Missense_Mutation p.P15T 0.49 tolerated_low_confidence(0.15) possibly_damaging(0.803) TCGA-90-7964-01 19 4429573 4429573 C T CHAF1A Silent p.I581I 0.38 TCGA-90-7964-01 19 44418486 44418486 C T ZNF45 Missense_Mutation p.G368S 0.43 tolerated(0.08) probably_damaging(0.945) TCGA-90-7964-01 19 46388037 46388037 C T IRF2BP1 Silent p.E332E 0.45 TCGA-90-7964-01 19 51220034 51220034 G T SHANK1 Missense_Mutation p.P48H 0.38 probably_damaging(0.953) TCGA-90-7964-01 19 51411881 51411881 G T KLK4 Silent p.T143T 0.17 TCGA-90-7964-01 19 51628389 51628389 C A SIGLEC9 Missense_Mutation p.P53H 0.41 tolerated(0.36) benign(0.011) TCGA-90-7964-01 19 52004757 52004757 G T SIGLEC12 Silent p.A77A 0.22 TCGA-90-7964-01 19 52004758 52004758 G T SIGLEC12 Missense_Mutation p.A77D 0.22 deleterious(0) probably_damaging(0.992) TCGA-90-7964-01 19 52033197 52033197 G C SIGLEC6 Missense_Mutation p.L265V 0.24 tolerated(0.17) benign(0.326) TCGA-90-7964-01 19 52034000 52034000 G T SIGLEC6 Missense_Mutation p.T214N 0.30 deleterious(0) probably_damaging(0.996) TCGA-90-7964-01 19 53208116 53208116 C A ZNF611 3'UTR 0.57 TCGA-90-7964-01 19 53303449 53303449 G T ZNF28 Missense_Mutation p.P550Q 0.44 deleterious(0) probably_damaging(0.997) TCGA-90-7964-01 19 53611755 53611755 G T ZNF415 Missense_Mutation p.Q515K 0.46 tolerated(0.17) benign(0.407) TCGA-90-7964-01 19 53794431 53794431 G C BIRC8 5'UTR 0.27 TCGA-90-7964-01 19 54973587 54973587 G A LENG9 Missense_Mutation p.R397W 0.22 deleterious(0.04) benign(0.004) TCGA-90-7964-01 19 55143511 55143511 G T LILRB1 Missense_Mutation p.D162Y 0.16 deleterious(0.02) benign(0.022) TCGA-90-7964-01 19 55606718 55606718 C A PPP1R12C Missense_Mutation p.E465D 0.41 tolerated(0.09) possibly_damaging(0.824) TCGA-90-7964-01 19 57759999 57759999 A T ZNF805 Missense_Mutation p.I62F 0.36 deleterious(0.03) benign(0.078) TCGA-90-7964-01 19 6381036 6381036 G C GTF2F1 Silent p.P370P 0.22 TCGA-90-7964-01 19 8188395 8188395 G T FBN3 Missense_Mutation p.A1012D 0.54 tolerated(0.22) benign(0.222) TCGA-90-7964-01 19 9058649 9058649 C A MUC16 Missense_Mutation p.E9599D 0.45 unknown(0) TCGA-90-7964-01 19 9086484 9086484 C A MUC16 Missense_Mutation p.M1777I 0.61 unknown(0) TCGA-90-7964-01 19 9577388 9577388 A T ZNF560 Nonsense_Mutation p.C745* 0.53 TCGA-90-7964-01 1 108303419 108303419 T A VAV3 Missense_Mutation p.H335L 0.38 deleterious(0) possibly_damaging(0.881) TCGA-90-7964-01 1 110884144 110884144 G T RBM15 Missense_Mutation p.R706L 0.22 tolerated(0.07) benign(0.13) TCGA-90-7964-01 1 1120384 1120384 G A TTLL10 Silent p.L432L 0.24 TCGA-90-7964-01 1 1120589 1120589 G T TTLL10 Intron 0.27 TCGA-90-7964-01 1 150551490 150551490 C T MCL1 Missense_Mutation p.E173K 0.18 tolerated(0.3) benign(0.009) TCGA-90-7964-01 1 151774137 151774137 G T LINGO4 Missense_Mutation p.D348E 0.43 tolerated(0.26) benign(0.042) TCGA-90-7964-01 1 152325417 152325417 C G FLG2 Missense_Mutation p.E1615D 0.22 benign(0.092) TCGA-90-7964-01 1 152681664 152681664 C T LCE4A Missense_Mutation p.S38F 0.32 tolerated_low_confidence(0.67) unknown(0) TCGA-90-7964-01 1 153346350 153346350 C A S100A12 Missense_Mutation p.V78L 0.55 tolerated(0.15) benign(0.002) TCGA-90-7964-01 1 153346351 153346351 C T S100A12 Silent p.L77L 0.55 TCGA-90-7964-01 1 154245844 154245844 G C HAX1 Missense_Mutation p.R29P 0.19 deleterious(0.04) probably_damaging(0.953) TCGA-90-7964-01 1 154245849 154245849 G A HAX1 Missense_Mutation p.E31K 0.17 deleterious(0.01) possibly_damaging(0.794) TCGA-90-7964-01 1 154245861 154245861 G A HAX1 Missense_Mutation p.E35K 0.21 deleterious(0.01) benign(0.281) TCGA-90-7964-01 1 154245933 154245933 G A HAX1 Missense_Mutation p.E59K 0.15 tolerated(0.1) benign(0.302) TCGA-90-7964-01 1 154931527 154931527 C A PYGO2 Missense_Mutation p.G317C 0.49 tolerated(0.13) benign(0.089) TCGA-90-7964-01 1 156815200 156815200 G A INSRR Missense_Mutation p.P727L 0.21 tolerated(0.05) possibly_damaging(0.588) TCGA-90-7964-01 1 156846275 156846275 C T NTRK1 Silent p.I572I 0.56 TCGA-90-7964-01 1 159283730 159283730 G A OR10J3 Silent p.A240A 0.22 TCGA-90-7964-01 1 161172155 161172155 G T NDUFS2 5'UTR 0.46 TCGA-90-7964-01 1 16353905 16353905 C T CLCNKA Silent p.L252L 0.41 TCGA-90-7964-01 1 16558413 16558413 C T RSG1 3'UTR 0.27 TCGA-90-7964-01 1 16558451 16558451 C T RSG1 3'UTR 0.26 TCGA-90-7964-01 1 17084318 17084318 G A MST1L RNA 0.07 TCGA-90-7964-01 1 17085299 17085299 G T MST1L Intron 0.27 TCGA-90-7964-01 1 172628449 172628449 G T FASLG Silent p.V36V 0.48 TCGA-90-7964-01 1 173499082 173499082 G A SLC9C2 Silent p.L759L 0.44 TCGA-90-7964-01 1 175292587 175292587 C A TNR Missense_Mutation p.G1328V 0.34 deleterious(0) probably_damaging(1) TCGA-90-7964-01 1 17559428 17559428 C G PADI1 Missense_Mutation p.P426A 0.25 deleterious(0) probably_damaging(1) TCGA-90-7964-01 1 176564444 176564444 C A PAPPA2 Missense_Mutation p.S568R 0.42 deleterious(0.01) possibly_damaging(0.465) TCGA-90-7964-01 1 17720524 17720524 C T PADI6 RNA 0.48 TCGA-90-7964-01 1 177249577 177249577 A G BRINP2 Missense_Mutation p.Q422R 0.32 deleterious(0.01) probably_damaging(0.968) TCGA-90-7964-01 1 182025696 182025696 C T ZNF648 Missense_Mutation p.A484T 0.24 tolerated(0.12) benign(0.21) TCGA-90-7964-01 1 183816739 183816739 C T RGL1 Nonsense_Mutation p.Q95* 0.43 TCGA-90-7964-01 1 183907896 183907896 C T COLGALT2 Silent p.%3D 0.26 TCGA-90-7964-01 1 185144106 185144106 C G SWT1 Nonsense_Mutation p.S276* 0.45 TCGA-90-7964-01 1 19484458 19484458 C G UBR4 Missense_Mutation p.E1871Q 0.48 probably_damaging(0.998) TCGA-90-7964-01 1 197008418 197008418 C T F13B 3'UTR 0.48 TCGA-90-7964-01 1 204128594 204128594 G A REN Missense_Mutation p.P208S 0.22 deleterious(0) probably_damaging(0.993) TCGA-90-7964-01 1 207111027 207111027 G C PIGR Missense_Mutation p.P153R 0.38 deleterious(0.03) benign(0.443) TCGA-90-7964-01 1 216074223 216074223 C T USH2A Missense_Mutation p.R2442K 0.44 probably_damaging(0.945) TCGA-90-7964-01 1 216498879 216498879 C A USH2A Missense_Mutation p.C304F 0.40 probably_damaging(1) TCGA-90-7964-01 1 21804618 21804618 G T NBPF3 Intron 0.17 TCGA-90-7964-01 1 237617773 237617773 C A RYR2 Missense_Mutation p.L459I 0.41 benign(0.145) TCGA-90-7964-01 1 237947455 237947455 T A RYR2 Missense_Mutation p.V4148D 0.24 probably_damaging(0.979) TCGA-90-7964-01 1 237957203 237957203 G T RYR2 Missense_Mutation p.A4607S 0.29 possibly_damaging(0.731) TCGA-90-7964-01 1 240497485 240497485 A C FMN2 Missense_Mutation p.E1574A 0.25 probably_damaging(0.944) TCGA-90-7964-01 1 24172146 24172146 G C FUCA1 3'UTR 0.38 TCGA-90-7964-01 1 243449694 243449694 G T SDCCAG8 Missense_Mutation p.A181S 0.47 tolerated(0.34) benign(0.055) TCGA-90-7964-01 1 24394836 24394836 G T MYOM3 Silent p.R1058R 0.46 TCGA-90-7964-01 1 24434516 24434516 G C MYOM3 Missense_Mutation p.A70G 0.38 deleterious(0.05) possibly_damaging(0.905) TCGA-90-7964-01 1 246493794 246493794 C T SMYD3 Missense_Mutation p.D128N 0.42 deleterious(0.04) benign(0.033) TCGA-90-7964-01 1 248813337 248813337 G T OR2T27 Silent p.P283P 0.67 TCGA-90-7964-01 1 26510315 26510315 C T CNKSR1 Silent p.P283P 0.55 TCGA-90-7964-01 1 27674316 27674316 C T SYTL1 Missense_Mutation p.H120Y 0.18 tolerated(0.26) benign(0) TCGA-90-7964-01 1 27720432 27720432 G A GPR3 Missense_Mutation p.D44N 0.25 deleterious(0.04) possibly_damaging(0.831) TCGA-90-7964-01 1 34082575 34082575 C A CSMD2 Missense_Mutation p.G1943C 0.20 deleterious(0) probably_damaging(0.999) TCGA-90-7964-01 1 34082576 34082576 C A CSMD2 Splice_Site p.X1943_splice 0.21 TCGA-90-7964-01 1 34100916 34100916 G T CSMD2 Missense_Mutation p.Q1622K 0.12 tolerated(0.08) benign(0.074) TCGA-90-7964-01 1 38095312 38095312 C T RSPO1 Missense_Mutation p.V8M 0.59 deleterious(0.01) benign(0.197) TCGA-90-7964-01 1 39926371 39926371 A G MACF1 Missense_Mutation p.K5084R 0.30 probably_damaging(0.958) TCGA-90-7964-01 1 52249645 52249645 G C OSBPL9 Missense_Mutation p.W534C 0.13 deleterious(0) probably_damaging(1) TCGA-90-7964-01 1 52937711 52937711 C A ZCCHC11 Missense_Mutation p.D931Y 0.32 deleterious(0) possibly_damaging(0.891) TCGA-90-7964-01 1 6189051 6189051 C T CHD5 Missense_Mutation p.E1156K 0.20 deleterious(0) probably_damaging(0.987) TCGA-90-7964-01 1 62240910 62240910 C T INADL Silent p.L251L 0.43 TCGA-90-7964-01 1 67705957 67705957 C A IL23R Silent p.R381R 0.20 TCGA-90-7964-01 1 70652985 70652985 T C LRRC40 Missense_Mutation p.I124V 0.22 tolerated(0.09) benign(0.126) TCGA-90-7964-01 1 74507031 74507031 C A LRRIQ3 Missense_Mutation p.L528F 0.45 tolerated(0.14) benign(0.172) TCGA-90-7964-01 1 75065490 75065490 C T C1orf173 Missense_Mutation p.D539N 0.45 tolerated(0.11) benign(0.161) TCGA-90-7964-01 1 75677238 75677238 C G SLC44A5 Splice_Site p.X655_splice 0.39 TCGA-90-7964-01 1 77093220 77093220 G T ST6GALNAC3 Missense_Mutation p.G236V 0.26 probably_damaging(0.996) TCGA-90-7964-01 1 84630106 84630106 G T PRKACB Intron 0.36 TCGA-90-7964-01 1 90401106 90401106 G T LRRC8D Missense_Mutation p.G827W 0.24 deleterious(0) probably_damaging(0.964) TCGA-90-7964-01 1 9778802 9778802 G A PIK3CD Silent p.T357T 0.18 TCGA-90-7964-01 20 1551455 1551455 G T SIRPB1 Silent p.T360T 0.40 TCGA-90-7964-01 20 17462705 17462705 A G PCSK2 Missense_Mutation p.N636S 0.38 tolerated_low_confidence(1) benign(0) TCGA-90-7964-01 20 23432531 23432531 C G CST11 Silent p.L85L 0.05 TCGA-90-7964-01 20 29965001 29965001 C G DEFB118 3'Flank 0.32 TCGA-90-7964-01 20 31608357 31608357 G C BPIFB2 Missense_Mutation p.Q386H 0.22 deleterious(0.01) possibly_damaging(0.78) TCGA-90-7964-01 20 31673843 31673843 G T BPIFB4 Missense_Mutation p.D267Y 0.30 deleterious(0) probably_damaging(0.984) TCGA-90-7964-01 20 35854121 35854121 A G RPN2 Silent p.T405T 0.38 TCGA-90-7964-01 20 36888951 36888951 G A KIAA1755 5'UTR 0.34 TCGA-90-7964-01 20 36938943 36938943 C A BPI Missense_Mutation p.A146D 0.30 deleterious(0.03) probably_damaging(0.989) TCGA-90-7964-01 20 39792746 39792746 G C PLCG1 Silent p.G374G 0.15 TCGA-90-7964-01 20 39990453 39990453 G A EMILIN3 Silent p.L586L 0.33 TCGA-90-7964-01 20 40757418 40757418 G C PTPRT Missense_Mutation p.D941E 0.43 deleterious(0.03) probably_damaging(0.993) TCGA-90-7964-01 20 61143456 61143456 G A C20orf166 5'Flank 0.37 TCGA-90-7964-01 20 61430936 61430936 G A MRGBP Missense_Mutation p.V186I 0.38 deleterious(0.03) benign(0.402) TCGA-90-7964-01 20 8130973 8130973 G T PLCB1 Missense_Mutation p.R44S 0.36 deleterious(0) benign(0.028) TCGA-90-7964-01 21 11039291 11039291 G A BAGE2 RNA 0.04 TCGA-90-7964-01 21 11098821 11098821 C T BAGE2 RNA 0.07 TCGA-90-7964-01 21 28304416 28304416 C G ADAMTS5 Missense_Mutation p.W652C 0.24 deleterious(0) probably_damaging(0.999) TCGA-90-7964-01 21 30963462 30963462 G T GRIK1 Silent p.A445A 0.29 TCGA-90-7964-01 21 32127653 32127653 C A KRTAP21-1 Missense_Mutation p.G15V 0.31 deleterious_low_confidence(0) unknown(0) TCGA-90-7964-01 21 34925505 34925505 C T SON Missense_Mutation p.S1323L 0.22 benign(0) TCGA-90-7964-01 21 37443303 37443303 C G CBR1 Missense_Mutation p.F115L 0.25 deleterious(0) probably_damaging(0.911) TCGA-90-7964-01 21 37443328 37443328 G C CBR1 Missense_Mutation p.E124Q 0.26 tolerated(0.24) benign(0.163) TCGA-90-7964-01 21 38538495 38538495 G A TTC3 Missense_Mutation p.D1327N 0.33 tolerated(0.1) benign(0.17) TCGA-90-7964-01 21 39580330 39580330 T A DSCR10 RNA 0.38 TCGA-90-7964-01 21 46117352 46117352 C G KRTAP10-12 Missense_Mutation p.S79C 0.21 tolerated(0.08) unknown(0) TCGA-90-7964-01 21 47952070 47952070 G T DIP2A Missense_Mutation p.V409L 0.18 tolerated(0.44) probably_damaging(0.946) TCGA-90-7964-01 21 47981704 47981704 A G DIP2A Missense_Mutation p.M1359V 0.30 tolerated(0.06) possibly_damaging(0.59) TCGA-90-7964-01 22 21322181 21322181 G T AIFM3 5'UTR 0.48 TCGA-90-7964-01 22 22868953 22868953 G T ZNF280A Silent p.T334T 0.26 TCGA-90-7964-01 22 23915712 23915712 G A IGLL1 Missense_Mutation p.A128V 0.19 tolerated_low_confidence(0.09) benign(0.098) TCGA-90-7964-01 22 28193332 28193332 T - MN1 Frame_Shift_Del p.Q1067Rfs*3 0.26 TCGA-90-7964-01 22 29115447 29115447 C G CHEK2 Missense_Mutation p.D250H 0.20 tolerated(0.13) possibly_damaging(0.535) TCGA-90-7964-01 22 30662812 30662812 G T OSM 5'UTR 0.30 TCGA-90-7964-01 22 31884685 31884685 C A EIF4ENIF1 Missense_Mutation p.G7V 0.12 tolerated_low_confidence(0.31) benign(0.008) TCGA-90-7964-01 22 37196876 37196876 G A PVALB 3'UTR 0.38 TCGA-90-7964-01 22 37425498 37425498 G C MPST Missense_Mutation p.W299C 0.38 deleterious(0) probably_damaging(1) TCGA-90-7964-01 22 37915043 37915043 C G CARD10 Silent p.R55R 0.29 TCGA-90-7964-01 22 40362116 40362116 C A GRAP2 Missense_Mutation p.S138Y 0.38 deleterious(0) probably_damaging(1) TCGA-90-7964-01 22 40362117 40362117 C A GRAP2 Silent p.S138S 0.38 TCGA-90-7964-01 22 40417711 40417711 G T FAM83F Missense_Mutation p.K399N 0.43 deleterious(0.05) benign(0.007) TCGA-90-7964-01 22 41077842 41077852 GTCGGTGAAGC - MCHR1 Frame_Shift_Del p.S394Cfs*16 0.21 TCGA-90-7964-01 22 41257214 41257214 A G DNAJB7 Missense_Mutation p.F262S 0.30 tolerated(0.27) benign(0.012) TCGA-90-7964-01 22 41652104 41652104 T A RANGAP1 Missense_Mutation p.T332S 0.51 tolerated(0.24) benign(0.002) TCGA-90-7964-01 22 45580435 45580435 G A NUP50 Missense_Mutation p.E436K 0.30 tolerated(0.13) benign(0.17) TCGA-90-7964-01 22 50632839 50632839 G T TRABD Silent p.P61P 0.11 TCGA-90-7964-01 22 50898002 50898002 G A SBF1 Silent p.V1195V 0.36 TCGA-90-7964-01 2 100623769 100623769 C A AFF3 Nonsense_Mutation p.E135* 0.22 TCGA-90-7964-01 2 111144833 111144833 G C LINC01106 5'Flank 0.15 TCGA-90-7964-01 2 113940593 113940593 G C PSD4 Missense_Mutation p.C187S 0.42 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-90-7964-01 2 116538489 116538489 A T DPP10 Silent p.S471S 0.34 TCGA-90-7964-01 2 131519657 131519657 G A AMER3 Silent p.K4K 0.17 TCGA-90-7964-01 2 135741350 135741350 G T MAP3K19 Missense_Mutation p.L1040I 0.20 deleterious(0.01) possibly_damaging(0.703) TCGA-90-7964-01 2 145157267 145157267 G A ZEB2 Missense_Mutation p.S496F 0.32 tolerated(0.06) benign(0.089) TCGA-90-7964-01 2 166892867 166892867 C G SCN1A Missense_Mutation p.R1040S 0.20 tolerated(0.22) benign(0.184) TCGA-90-7964-01 2 168099292 168099292 G T XIRP2 Missense_Mutation p.V464L 0.34 benign(0.002) TCGA-90-7964-01 2 176947036 176947036 C G EVX2 Missense_Mutation p.R190P 0.24 deleterious(0) probably_damaging(1) TCGA-90-7964-01 2 17898111 17898111 C T SMC6 Missense_Mutation p.E415K 0.29 tolerated(0.06) possibly_damaging(0.794) TCGA-90-7964-01 2 179438121 179438121 A T TTN Silent p.P24246P 0.39 TCGA-90-7964-01 2 179594445 179594445 C A TTN Nonsense_Mutation p.E6179* 0.35 TCGA-90-7964-01 2 179594670 179594670 G T TTN Missense_Mutation p.P6104T 0.29 TCGA-90-7964-01 2 179629357 179629357 C G TTN Silent p.T3295T 0.34 TCGA-90-7964-01 2 179637873 179637873 C T TTN Silent p.A2606A 0.27 TCGA-90-7964-01 2 182468677 182468677 A T CERKL Missense_Mutation p.F123Y 0.22 tolerated(0.2) probably_damaging(0.999) TCGA-90-7964-01 2 190719519 190719519 A C PMS1 Silent p.S507S 0.37 TCGA-90-7964-01 2 190925122 190925122 C A MSTN Missense_Mutation p.C138F 0.31 deleterious(0.02) benign(0.043) TCGA-90-7964-01 2 1926994 1926994 C G MYT1L Missense_Mutation p.D183H 0.25 tolerated(0.07) possibly_damaging(0.88) TCGA-90-7964-01 2 196718101 196718101 G T DNAH7 Missense_Mutation p.A2916D 0.35 deleterious(0) probably_damaging(0.981) TCGA-90-7964-01 2 197184595 197184595 C A HECW2 Missense_Mutation p.G340V 0.29 deleterious_low_confidence(0.03) possibly_damaging(0.902) TCGA-90-7964-01 2 197184596 197184596 C T HECW2 Missense_Mutation p.G340R 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.826) TCGA-90-7964-01 2 198365105 198365105 G C HSPE1 5'UTR 0.25 TCGA-90-7964-01 2 198498447 198498447 C G RFTN2 Missense_Mutation p.G238A 0.22 tolerated(0.1) benign(0.067) TCGA-90-7964-01 2 207583000 207583000 C A DYTN Missense_Mutation p.D2Y 0.36 deleterious(0) possibly_damaging(0.875) TCGA-90-7964-01 2 207988759 207988759 C G KLF7 Missense_Mutation p.V158L 0.38 tolerated(0.5) benign(0.005) TCGA-90-7964-01 2 21229868 21229868 C T APOB Missense_Mutation p.R3291H 0.27 benign(0.001) TCGA-90-7964-01 2 21230546 21230546 G A APOB Missense_Mutation p.T3065I 0.33 benign(0.325) TCGA-90-7964-01 2 219143241 219143241 G A TMBIM1 Missense_Mutation p.P157L 0.21 tolerated(0.06) benign(0.074) TCGA-90-7964-01 2 219695097 219695097 C G PRKAG3 Silent p.R79R 0.40 TCGA-90-7964-01 2 232263154 232263154 G C B3GNT7 Missense_Mutation p.D242H 0.34 deleterious(0) probably_damaging(1) TCGA-90-7964-01 2 232389747 232389747 G A NMUR1 3'UTR 0.40 TCGA-90-7964-01 2 232389805 232389805 G A NMUR1 Silent p.P410P 0.22 TCGA-90-7964-01 2 232390049 232390049 C T NMUR1 Missense_Mutation p.G329D 0.27 tolerated(0.64) benign(0.026) TCGA-90-7964-01 2 234545179 234545179 C A UGT1A10 Missense_Mutation p.A4E 0.24 tolerated_low_confidence(0.2) benign(0.119) TCGA-90-7964-01 2 240056024 240056024 C A HDAC4 Missense_Mutation p.R404L 0.48 tolerated(0.72) possibly_damaging(0.727) TCGA-90-7964-01 2 240923009 240923009 C T NDUFA10 Intron 0.36 TCGA-90-7964-01 2 242407622 242407622 G T FARP2 Missense_Mutation p.C654F 0.43 tolerated(0.72) benign(0.004) TCGA-90-7964-01 2 27806566 27806566 G A ZNF512 Silent p.R24R 0.29 TCGA-90-7964-01 2 28719029 28719029 G T PLB1 Silent p.L16L 0.29 TCGA-90-7964-01 2 33952375 33952375 G T AC009499.1 Intron 0.33 TCGA-90-7964-01 2 40401966 40401966 T A SLC8A1 Silent p.T651T 0.19 TCGA-90-7964-01 2 44079540 44079540 C A ABCG8 Silent p.T203T 0.42 TCGA-90-7964-01 2 46985804 46985804 C T SOCS5 Silent p.I45I 0.17 TCGA-90-7964-01 2 55873399 55873399 G A PNPT1 Missense_Mutation p.A578V 0.32 deleterious(0) probably_damaging(0.93) TCGA-90-7964-01 2 63609155 63609155 C A WDPCP Missense_Mutation p.A504S 0.18 deleterious(0) probably_damaging(1) TCGA-90-7964-01 2 73452948 73452948 C T SMYD5 Silent p.S377S 0.23 TCGA-90-7964-01 2 74274882 74274882 G T TET3 Missense_Mutation p.R478M 0.47 deleterious(0) possibly_damaging(0.471) TCGA-90-7964-01 3 107491730 107491730 G T BBX Missense_Mutation p.D388Y 0.71 tolerated(0.08) possibly_damaging(0.486) TCGA-90-7964-01 3 108723950 108723950 C A MORC1 Silent p.L660L 0.61 TCGA-90-7964-01 3 113955765 113955765 C A ZNF80 Nonsense_Mutation p.E53* 0.37 TCGA-90-7964-01 3 120115784 120115784 G A FSTL1 3'UTR 0.38 TCGA-90-7964-01 3 129017227 129017229 GAG AA HMCES Frame_Shift_Del p.E162Kfs*13 0.24 TCGA-90-7964-01 3 169866888 169866888 G C PHC3 Missense_Mutation p.L187V 0.13 deleterious(0) probably_damaging(0.995) TCGA-90-7964-01 3 169866971 169866971 G A PHC3 Missense_Mutation p.S159F 0.16 deleterious(0) possibly_damaging(0.724) TCGA-90-7964-01 3 178962295 178962295 C T KCNMB3 Silent p.Q149Q 0.15 TCGA-90-7964-01 3 179051581 179051581 C T ZNF639 Nonsense_Mutation p.Q277* 0.43 TCGA-90-7964-01 3 186838893 186838893 G C RPL39L 3'UTR 0.22 TCGA-90-7964-01 3 195595112 195595112 G A TNK2 Missense_Mutation p.A749V 0.22 deleterious_low_confidence(0.03) benign(0.037) TCGA-90-7964-01 3 46783994 46783994 C A PRSS45 Missense_Mutation p.C178F 0.44 deleterious(0) probably_damaging(1) TCGA-90-7964-01 3 98109910 98109910 C A OR5K3 Missense_Mutation p.T134N 0.32 deleterious(0.01) benign(0.374) TCGA-90-7964-01 4 100205769 100205769 G T ADH1A Missense_Mutation p.S118R 0.50 tolerated(0.19) benign(0.062) TCGA-90-7964-01 4 103822385 103822385 G T SLC9B1 Silent p.I479I 0.08 TCGA-90-7964-01 4 104098150 104098150 C A CENPE Missense_Mutation p.K432N 0.30 probably_damaging(0.982) TCGA-90-7964-01 4 108955491 108955507 AAGGATTTTACAAATAC - HADH Frame_Shift_Del p.G326Vfs*13 0.24 TCGA-90-7964-01 4 146479004 146479004 A G SMAD1 Missense_Mutation p.H439R 0.08 deleterious(0.02) probably_damaging(0.979) TCGA-90-7964-01 4 154336033 154336033 G A MND1 3'UTR 0.24 TCGA-90-7964-01 4 164271435 164271435 G C NPY5R Missense_Mutation p.E4Q 0.42 tolerated(0.09) benign(0.322) TCGA-90-7964-01 4 164271540 164271540 G T NPY5R Missense_Mutation p.D39Y 0.48 deleterious(0.02) probably_damaging(0.999) TCGA-90-7964-01 4 17528660 17528660 C A CLRN2 Silent p.T218T 0.47 TCGA-90-7964-01 4 26483354 26483354 C - CCKAR Frame_Shift_Del p.G398Efs*24 0.34 TCGA-90-7964-01 4 31144270 31144270 G T PCDH7 Silent p.L1189L 0.08 TCGA-90-7964-01 4 4199160 4199160 G C OTOP1 Missense_Mutation p.C467W 0.05 deleterious(0.02) possibly_damaging(0.57) TCGA-90-7964-01 4 44449584 44449584 G C KCTD8 Missense_Mutation p.F319L 0.33 deleterious(0) benign(0.307) TCGA-90-7964-01 4 57269300 57269301 - A PPAT Frame_Shift_Ins p.M189Ifs*28 0.33 TCGA-90-7964-01 4 57777555 57777555 A G REST Missense_Mutation p.I251V 0.30 tolerated(0.21) possibly_damaging(0.74) TCGA-90-7964-01 4 69327552 69327552 A T TMPRSS11E Missense_Mutation p.R9W 0.11 tolerated(0.08) probably_damaging(0.919) TCGA-90-7964-01 4 70620832 70620832 T C SULT1B1 Missense_Mutation p.H35R 0.04 tolerated(0.08) benign(0) TCGA-90-7964-01 4 71500029 71500029 C T ENAM Missense_Mutation p.A72V 0.43 tolerated(0.06) benign(0.018) TCGA-90-7964-01 4 76911935 76911935 G C SDAD1 Missense_Mutation p.I20M 0.41 tolerated(0.06) benign(0.141) TCGA-90-7964-01 4 79238572 79238572 A G FRAS1 Missense_Mutation p.T624A 0.52 benign(0.021) TCGA-90-7964-01 4 85614071 85614072 - T WDFY3 Frame_Shift_Ins p.D3006Rfs*25 0.38 TCGA-90-7964-01 5 120021746 120021746 G A PRR16 Missense_Mutation p.G63D 0.49 deleterious_low_confidence(0.03) possibly_damaging(0.736) TCGA-90-7964-01 5 1210590 1210590 G A SLC6A19 Silent p.V125V 0.16 TCGA-90-7964-01 5 137734048 137734048 G A KDM3B Missense_Mutation p.E1005K 0.54 deleterious(0) probably_damaging(0.999) TCGA-90-7964-01 5 137734072 137734072 G C KDM3B Missense_Mutation p.E1013Q 0.51 deleterious(0.04) probably_damaging(0.92) TCGA-90-7964-01 5 137735562 137735562 G A KDM3B Nonsense_Mutation p.W1020* 0.57 TCGA-90-7964-01 5 137846305 137846305 G A ETF1 Silent p.L344L 0.16 TCGA-90-7964-01 5 140530370 140530370 C A PCDHB6 Missense_Mutation p.H178N 0.06 deleterious(0.01) benign(0.04) TCGA-90-7964-01 5 140589936 140589936 T G PCDHB12 Missense_Mutation p.V486G 0.50 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-90-7964-01 5 140603241 140603241 G A PCDHB14 Missense_Mutation p.G55E 0.40 tolerated_low_confidence(0.67) benign(0.012) TCGA-90-7964-01 5 140784118 140784118 G T PCDHGA9 Silent p.T533T 0.07 TCGA-90-7964-01 5 140784119 140784119 G T PCDHGA9 Missense_Mutation p.A534S 0.07 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-90-7964-01 5 14465664 14465664 G T TRIO Missense_Mutation p.R1893L 0.31 benign(0.01) TCGA-90-7964-01 5 167957160 167957160 G T FBLL1 Missense_Mutation p.K217N 0.46 deleterious(0) probably_damaging(0.939) TCGA-90-7964-01 5 170319488 170319488 G T RANBP17 Silent p.G118G 0.48 TCGA-90-7964-01 5 176795157 176795157 G A RGS14 Splice_Site p.X247_splice 0.35 TCGA-90-7964-01 5 176795191 176795191 G A RGS14 Missense_Mutation p.R258Q 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-90-7964-01 5 176795796 176795796 G A RGS14 Missense_Mutation p.D310N 0.36 deleterious(0.01) probably_damaging(0.986) TCGA-90-7964-01 5 176939620 176939620 C T DDX41 Missense_Mutation p.E476K 0.40 tolerated(0.71) benign(0.021) TCGA-90-7964-01 5 26902755 26902755 C T CDH9 Silent p.L361L 0.31 TCGA-90-7964-01 5 35867531 35867531 T A IL7R Missense_Mutation p.S115R 0.38 tolerated(1) benign(0.004) TCGA-90-7964-01 5 37303434 37303434 C A NUP155 Missense_Mutation p.W1082L 0.31 deleterious(0) probably_damaging(1) TCGA-90-7964-01 5 40909687 40909687 C T C7 5'UTR 0.26 TCGA-90-7964-01 5 41052642 41052642 G A MROH2B Silent p.S385S 0.39 TCGA-90-7964-01 5 60241077 60241077 G A NDUFAF2 5'UTR 0.17 TCGA-90-7964-01 5 9054293 9054293 G A SEMA5A Silent p.T865T 0.24 TCGA-90-7964-01 5 94275857 94275857 A G MCTP1 Silent p.P368P 0.36 TCGA-90-7964-01 6 109802933 109802933 G T ZBTB24 Silent p.L99L 0.28 TCGA-90-7964-01 6 117114193 117114193 T A GPRC6A Missense_Mutation p.R631S 0.34 tolerated(0.42) benign(0.027) TCGA-90-7964-01 6 117128084 117128084 G T GPRC6A Missense_Mutation p.L262M 0.31 deleterious(0.03) benign(0.314) TCGA-90-7964-01 6 117641065 117641065 C T ROS1 Missense_Mutation p.G1969E 0.23 deleterious(0) probably_damaging(0.998) TCGA-90-7964-01 6 123319278 123319278 T C CLVS2 Missense_Mutation p.L119P 0.29 deleterious(0) probably_damaging(0.997) TCGA-90-7964-01 6 136879979 136879979 G C MAP3K5 Silent p.L1341L 0.34 TCGA-90-7964-01 6 139159525 139159525 G A ECT2L Silent p.V72V 0.13 TCGA-90-7964-01 6 139581539 139581539 C A TXLNB Missense_Mutation p.Q306H 0.35 deleterious(0) probably_damaging(0.998) TCGA-90-7964-01 6 153043020 153043020 T C MYCT1 Missense_Mutation p.S114P 0.23 tolerated(0.12) benign(0.022) TCGA-90-7964-01 6 153073400 153073400 A G VIP Missense_Mutation p.R30G 0.15 tolerated(1) benign(0) TCGA-90-7964-01 6 160208856 160208856 C A TCP1 Missense_Mutation p.E66D 0.34 tolerated(0.5) benign(0.039) TCGA-90-7964-01 6 160237058 160237058 G A PNLDC1 Silent p.E340E 0.25 TCGA-90-7964-01 6 17826038 17826039 - A KIF13A Frame_Shift_Ins p.A583Cfs*12 0.23 TCGA-90-7964-01 6 19838359 19838359 A G ID4 Missense_Mutation p.H125R 0.46 tolerated(0.85) benign(0) TCGA-90-7964-01 6 24505144 24505144 G T ALDH5A1 Silent p.L219L 0.27 TCGA-90-7964-01 6 25450214 25450214 G T LRRC16A Missense_Mutation p.G154C 0.24 deleterious(0.01) probably_damaging(0.977) TCGA-90-7964-01 6 29323830 29323830 G A OR5V1 Missense_Mutation p.T48M 0.26 tolerated(0.09) benign(0) TCGA-90-7964-01 6 29640859 29640859 G T ZFP57 Missense_Mutation p.N343K 0.38 tolerated(0.33) benign(0.007) TCGA-90-7964-01 6 31500590 31500590 G C DDX39B Silent p.L278L 0.24 TCGA-90-7964-01 6 31560499 31560499 G T NCR3 5'UTR 0.33 TCGA-90-7964-01 6 31852183 31852183 C T EHMT2 Silent p.E919E 0.21 TCGA-90-7964-01 6 32130697 32130697 T C PPT2 Silent p.Y299Y 0.29 TCGA-90-7964-01 6 32135707 32135707 C A EGFL8 Missense_Mutation p.L286M 0.32 tolerated(0.06) possibly_damaging(0.786) TCGA-90-7964-01 6 32549440 32549440 C A HLA-DRB1 Missense_Mutation p.W182C 0.18 deleterious(0) probably_damaging(1) TCGA-90-7964-01 6 33151929 33151929 G C COL11A2 Intron 0.20 TCGA-90-7964-01 6 36979598 36979598 C T FGD2 Silent p.F165F 0.33 TCGA-90-7964-01 6 38841141 38841141 T C DNAH8 Missense_Mutation p.Y2320H 0.34 probably_damaging(0.971) TCGA-90-7964-01 6 40400805 40400805 G T LRFN2 Silent p.A16A 0.26 TCGA-90-7964-01 6 41652473 41652473 T C TFEB Missense_Mutation p.D432G 0.37 tolerated(0.35) probably_damaging(0.989) TCGA-90-7964-01 6 42236089 42236089 T A TRERF1 Nonsense_Mutation p.R414* 0.43 TCGA-90-7964-01 6 43038550 43038550 G A KLC4 Missense_Mutation p.E386K 0.23 tolerated(0.05) probably_damaging(0.982) TCGA-90-7964-01 6 43307927 43307927 G A ZNF318 Missense_Mutation p.S1270L 0.21 benign(0.013) TCGA-90-7964-01 6 44107280 44107280 C T TMEM63B Silent p.L162L 0.40 TCGA-90-7964-01 6 56510666 56510666 T C DST 5'Flank 0.43 TCGA-90-7964-01 6 86252997 86252997 A G SNX14 Missense_Mutation p.V431A 0.30 deleterious(0.02) possibly_damaging(0.755) TCGA-90-7964-01 6 90604989 90604989 C A GJA10 Missense_Mutation p.Q268K 0.35 deleterious(0.04) benign(0.403) TCGA-90-7964-01 6 93969072 93969072 C A EPHA7 Nonsense_Mutation p.G642* 0.37 TCGA-90-7964-01 7 100551987 100551987 T A MUC3A Silent p.S246S 0.14 TCGA-90-7964-01 7 100552887 100552887 G A MUC3A Missense_Mutation p.C511Y 0.14 deleterious(0) probably_damaging(0.998) TCGA-90-7964-01 7 100808064 100808064 C T VGF Missense_Mutation p.G21R 0.33 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-90-7964-01 7 103061203 103061203 C G SLC26A5 Missense_Mutation p.V92L 0.29 deleterious(0) probably_damaging(0.946) TCGA-90-7964-01 7 103216138 103216138 C G RELN Missense_Mutation p.R1387P 0.31 deleterious(0) possibly_damaging(0.872) TCGA-90-7964-01 7 104748140 104748140 C A KMT2E Nonsense_Mutation p.S1079* 0.29 TCGA-90-7964-01 7 105429127 105429127 G A ATXN7L1 Missense_Mutation p.A93V 0.42 deleterious(0) benign(0.222) TCGA-90-7964-01 7 106508528 106508528 G T PIK3CG Missense_Mutation p.E174D 0.20 tolerated(0.35) benign(0.042) TCGA-90-7964-01 7 106526669 106526669 A C PIK3CG Missense_Mutation p.T988P 0.55 deleterious(0) probably_damaging(0.991) TCGA-90-7964-01 7 123302889 123302889 C A LMOD2 Missense_Mutation p.P417T 0.21 deleterious(0.01) benign(0.075) TCGA-90-7964-01 7 127669980 127669980 G C LRRC4 Missense_Mutation p.F238L 0.23 tolerated(0.13) probably_damaging(0.922) TCGA-90-7964-01 7 129066382 129066382 C - AHCYL2 Frame_Shift_Del p.F604Sfs*12 0.21 TCGA-90-7964-01 7 129710634 129710634 C T KLHDC10 Missense_Mutation p.R51W 0.20 deleterious_low_confidence(0) possibly_damaging(0.518) TCGA-90-7964-01 7 129853337 129853337 G C SSMEM1 Missense_Mutation p.K67N 0.28 deleterious(0.01) possibly_damaging(0.607) TCGA-90-7964-01 7 132192759 132192759 C A PLXNA4 Missense_Mutation p.D232Y 0.30 deleterious(0.01) probably_damaging(1) TCGA-90-7964-01 7 141365088 141365088 G A KIAA1147 Missense_Mutation p.S284L 0.30 deleterious(0.03) benign(0.253) TCGA-90-7964-01 7 142032515 142032515 C A TRBV7-1 Missense_Mutation p.A112D 0.39 deleterious(0) probably_damaging(0.998) TCGA-90-7964-01 7 143080288 143080288 C T ZYX Missense_Mutation p.P299L 0.27 tolerated(0.05) benign(0.01) TCGA-90-7964-01 7 143175258 143175258 G T TAS2R41 Missense_Mutation p.W98L 0.40 deleterious(0) probably_damaging(1) TCGA-90-7964-01 7 147183074 147183074 G T CNTNAP2 Missense_Mutation p.W573L 0.20 deleterious(0) probably_damaging(0.957) TCGA-90-7964-01 7 147183075 147183075 G T CNTNAP2 Missense_Mutation p.W573C 0.19 deleterious(0) probably_damaging(0.999) TCGA-90-7964-01 7 149528314 149528314 G T SSPO RNA 0.24 TCGA-90-7964-01 7 150831644 150831644 G T AGAP3 Missense_Mutation p.G495V 0.40 deleterious(0.05) possibly_damaging(0.637) TCGA-90-7964-01 7 150845967 150845967 T C GBX1 Silent p.A267A 0.28 TCGA-90-7964-01 7 154863007 154863007 C T HTR5A-AS1 Missense_Mutation p.V3I 0.34 tolerated_low_confidence(0.1) benign(0.208) TCGA-90-7964-01 7 158483309 158483309 C A NCAPG2 Missense_Mutation p.G163V 0.24 tolerated(0.09) probably_damaging(1) TCGA-90-7964-01 7 26225004 26225004 C T NFE2L3 Silent p.F562F 0.20 TCGA-90-7964-01 7 2687617 2687617 G T TTYH3 Silent p.L217L 0.32 TCGA-90-7964-01 7 30101597 30101597 G A PLEKHA8 Missense_Mutation p.A395T 0.29 tolerated(0.33) possibly_damaging(0.764) TCGA-90-7964-01 7 38393450 38393450 T C TRGV4 Missense_Mutation p.S74G 0.62 deleterious(0.02) benign(0.01) TCGA-90-7964-01 7 38393451 38393451 G A TRGV4 Silent p.S73S 0.60 TCGA-90-7964-01 7 38424424 38424424 C G AMPH Missense_Mutation p.D695H 0.39 deleterious_low_confidence(0) possibly_damaging(0.841) TCGA-90-7964-01 7 45010330 45010330 A G MYO1G Missense_Mutation p.Y360H 0.28 deleterious(0) probably_damaging(0.998) TCGA-90-7964-01 7 75045402 75045402 T C POM121C 3'Flank 0.38 TCGA-90-7964-01 7 8178481 8178481 G T ICA1 Missense_Mutation p.S350Y 0.22 deleterious(0.01) benign(0.248) TCGA-90-7964-01 7 87047888 87047888 T C ABCB4 Missense_Mutation p.T815A 0.32 deleterious(0.04) benign(0.327) TCGA-90-7964-01 7 87369167 87369167 G T RUNDC3B Missense_Mutation p.M190I 0.39 tolerated(0.07) benign(0.034) TCGA-90-7964-01 7 87825857 87825857 T C ADAM22 3'UTR 0.39 TCGA-90-7964-01 7 88964081 88964081 T A ZNF804B Missense_Mutation p.N595K 0.19 tolerated(1) benign(0.006) TCGA-90-7964-01 7 98609133 98609133 G A TRRAP Missense_Mutation p.R3757Q 0.42 benign(0.221) TCGA-90-7964-01 8 10480335 10480335 G A RP1L1 Missense_Mutation p.A126V 0.43 probably_damaging(0.982) TCGA-90-7964-01 8 10587844 10587844 G A SOX7 Missense_Mutation p.R34W 0.26 deleterious(0) possibly_damaging(0.849) TCGA-90-7964-01 8 107719089 107719089 C G OXR1 Nonsense_Mutation p.S448* 0.12 TCGA-90-7964-01 8 113657424 113657424 C T CSMD3 Missense_Mutation p.S1075N 0.37 tolerated(0.12) possibly_damaging(0.464) TCGA-90-7964-01 8 124253499 124253499 A G C8orf76 Missense_Mutation p.S30P 0.28 tolerated(0.44) benign(0.001) TCGA-90-7964-01 8 143425686 143425686 C A TSNARE1 Missense_Mutation p.C129F 0.19 deleterious_low_confidence(0) possibly_damaging(0.593) TCGA-90-7964-01 8 143961111 143961111 G T CYP11B1 Missense_Mutation p.A40D 0.37 deleterious(0.05) probably_damaging(0.992) TCGA-90-7964-01 8 144681404 144681404 C G TIGD5 Missense_Mutation p.S444C 0.21 deleterious(0) benign(0.259) TCGA-90-7964-01 8 144682082 144682082 C A TIGD5 3'UTR 0.50 TCGA-90-7964-01 8 21550863 21550863 G C GFRA2 Nonsense_Mutation p.S441* 0.45 TCGA-90-7964-01 8 36793046 36793046 C A KCNU1 Silent p.R1020R 0.23 TCGA-90-7964-01 8 39782280 39782280 A G IDO1 Missense_Mutation p.I232M 0.33 deleterious(0.02) possibly_damaging(0.649) TCGA-90-7964-01 8 52366117 52366117 T C PXDNL Missense_Mutation p.H404R 0.24 tolerated(0.35) benign(0.065) TCGA-90-7964-01 8 68139534 68139534 T C ARFGEF1 Missense_Mutation p.I1252V 0.33 tolerated(0.14) possibly_damaging(0.498) TCGA-90-7964-01 9 112705331 112705331 G - PALM2 Frame_Shift_Del p.N289Tfs*24 0.40 TCGA-90-7964-01 9 119976772 119976772 C G ASTN2 Missense_Mutation p.D294H 0.42 deleterious_low_confidence(0) unknown(0) TCGA-90-7964-01 9 126319869 126319869 T A DENND1A Missense_Mutation p.N325Y 0.69 deleterious(0) probably_damaging(0.918) TCGA-90-7964-01 9 131468144 131468144 A G PKN3 Missense_Mutation p.S133G 0.70 tolerated(0.1) benign(0.174) TCGA-90-7964-01 9 140058232 140058232 G T GRIN1 Missense_Mutation p.G843V 0.25 tolerated(0.25) probably_damaging(0.993) TCGA-90-7964-01 9 19050133 19050133 G C RRAGA Missense_Mutation p.C159S 0.44 tolerated(0.1) benign(0.213) TCGA-90-7964-01 9 33470022 33470022 C G NOL6 Silent p.L182L 0.32 TCGA-90-7964-01 9 6587254 6587254 G C GLDC Missense_Mutation p.I579M 0.54 tolerated(0.11) benign(0.372) TCGA-90-7964-01 9 6592958 6592958 C A GLDC Missense_Mutation p.D432Y 0.25 deleterious(0.01) benign(0.446) TCGA-90-7964-01 9 7103870 7103870 G T KDM4C Silent p.V870V 0.46 TCGA-90-7964-01 9 977219 977219 C A DMRT3 Missense_Mutation p.A73E 0.45 deleterious(0) probably_damaging(0.975) TCGA-90-7964-01 9 97864117 97864117 C T FANCC Missense_Mutation p.E517K 0.28 tolerated(0.41) possibly_damaging(0.6) TCGA-90-7964-01 X 100490999 100491000 TC - DRP2 Frame_Shift_Del p.H91Qfs*25 0.37 TCGA-90-7964-01 X 10098083 10098083 C T WWC3 Silent p.I840I 0.43 TCGA-90-7964-01 X 102339787 102339787 C G NXF3 Missense_Mutation p.R18T 0.61 deleterious(0.05) probably_damaging(0.969) TCGA-90-7964-01 X 109694771 109694771 C T RGAG1 Missense_Mutation p.S309L 0.60 deleterious(0.04) benign(0.237) TCGA-90-7964-01 X 130409965 130409965 G T IGSF1 Missense_Mutation p.L961I 0.62 tolerated(0.34) benign(0.139) TCGA-90-7964-01 X 139866138 139866138 C T CDR1 Missense_Mutation p.D132N 0.59 deleterious(0) possibly_damaging(0.728) TCGA-90-7964-01 X 140953376 140953376 C - MAGEC3 Frame_Shift_Del p.T83Hfs*32 0.35 TCGA-90-7964-01 X 153207083 153207083 A G RENBP Missense_Mutation p.F265L 0.56 deleterious(0) probably_damaging(1) TCGA-90-7964-01 X 2407660 2407660 C T ZBED1 Silent p.Q367Q 0.31 TCGA-90-7964-01 X 34149133 34149133 C G FAM47A Silent p.V421V 0.43 TCGA-90-7964-01 X 48673171 48673171 G C HDAC6 Intron 0.61 TCGA-90-7964-01 X 53265623 53265623 C A IQSEC2 Missense_Mutation p.G1111V 0.89 tolerated(0.29) benign(0.032) TCGA-90-7964-01 X 54114339 54114339 T A FAM120C Missense_Mutation p.D829V 0.58 deleterious(0) probably_damaging(0.956) TCGA-90-7964-01 X 57618782 57618782 G C ZXDB Missense_Mutation p.G101R 0.27 tolerated_low_confidence(0.27) probably_damaging(0.999) TCGA-90-7964-01 Y 22930777 22930777 C T RPS4Y2 Silent p.Y149Y 0.82 TCGA-90-7964-01 Y 3447632 3447632 G A TGIF2LY Missense_Mutation p.R116H 0.75 deleterious(0.05) benign(0.001) TCGA-90-7964-01 Y 4925475 4925475 G A PCDH11Y Missense_Mutation p.G204E 0.36 deleterious(0) probably_damaging(0.995) TCGA-90-A4ED-01 10 101835839 101835839 C T CPN1 Silent p.G83G 0.19 TCGA-90-A4ED-01 10 102259281 102259281 C T SEC31B Silent p.K495K 0.35 TCGA-90-A4ED-01 10 103339277 103339277 G A POLL Missense_Mutation p.P554L 0.34 tolerated(0.1) benign(0.086) TCGA-90-A4ED-01 10 103559101 103559101 G A MGEA5 Missense_Mutation p.P436L 0.36 deleterious(0) probably_damaging(0.959) TCGA-90-A4ED-01 10 103901044 103901044 C T PPRC1 Missense_Mutation p.P927S 0.34 tolerated_low_confidence(0.08) possibly_damaging(0.504) TCGA-90-A4ED-01 10 104594563 104594563 C T CYP17A1 Silent p.V215V 0.25 TCGA-90-A4ED-01 10 105785435 105785435 C T SLK Missense_Mutation p.S1222F 0.32 deleterious(0) possibly_damaging(0.883) TCGA-90-A4ED-01 10 107022096 107022096 C T SORCS3 Missense_Mutation p.P1151S 0.32 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 10 107022097 107022097 C T SORCS3 Missense_Mutation p.P1151L 0.32 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 10 108437081 108437081 G A SORCS1 Nonsense_Mutation p.R608* 0.41 TCGA-90-A4ED-01 10 108439013 108439013 C T SORCS1 Splice_Site p.X580_splice 0.38 TCGA-90-A4ED-01 10 118220539 118220539 G A PNLIPRP3 Silent p.S209S 0.39 TCGA-90-A4ED-01 10 118220540 118220540 G A PNLIPRP3 Missense_Mutation p.D210N 0.39 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 10 118434399 118434399 C T HSPA12A Missense_Mutation p.E641K 0.44 deleterious(0.01) possibly_damaging(0.771) TCGA-90-A4ED-01 10 119799943 119799943 G A RAB11FIP2 Missense_Mutation p.P163S 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-90-A4ED-01 10 124402843 124402843 G A DMBT1 Missense_Mutation p.E2391K 0.20 deleterious(0.03) probably_damaging(0.956) TCGA-90-A4ED-01 10 124458873 124458873 G A C10orf120 Missense_Mutation p.P78S 0.35 deleterious(0.05) probably_damaging(1) TCGA-90-A4ED-01 10 125426201 125426201 C T GPR26 Missense_Mutation p.S93F 0.18 deleterious(0) probably_damaging(0.976) TCGA-90-A4ED-01 10 125805533 125805533 C T CHST15 Missense_Mutation p.E66K 0.31 tolerated(0.27) benign(0.011) TCGA-90-A4ED-01 10 1262995 1262995 C T ADARB2 Silent p.G526G 0.32 TCGA-90-A4ED-01 10 126370916 126370916 A C FAM53B Missense_Mutation p.C56G 0.22 deleterious(0) possibly_damaging(0.533) TCGA-90-A4ED-01 10 126682453 126682453 G A CTBP2 Silent p.A834A 0.25 TCGA-90-A4ED-01 10 127698069 127698069 G A FANK1 3'UTR 0.52 TCGA-90-A4ED-01 10 128973918 128973918 C T FAM196A Missense_Mutation p.V248M 0.27 tolerated(0.05) benign(0.316) TCGA-90-A4ED-01 10 129691057 129691057 G A CLRN3 5'UTR 0.23 TCGA-90-A4ED-01 10 129904579 129904579 G A MKI67 Missense_Mutation p.P1842L 0.32 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 10 133769305 133769305 C T PPP2R2D Silent p.P369P 0.33 TCGA-90-A4ED-01 10 134660436 134660436 C T TTC40 Silent p.Q2089Q 0.15 TCGA-90-A4ED-01 10 135053316 135053316 G A VENTX Silent p.R126R 0.28 TCGA-90-A4ED-01 10 135113596 135113596 G A TUBGCP2 Missense_Mutation p.R58C 0.30 deleterious(0.02) probably_damaging(0.921) TCGA-90-A4ED-01 10 15103787 15103787 C T OLAH Silent p.S129S 0.30 TCGA-90-A4ED-01 10 16967594 16967594 C T CUBN Missense_Mutation p.D2151N 0.21 deleterious(0.01) probably_damaging(1) TCGA-90-A4ED-01 10 17747677 17747677 C T STAM Silent p.S382S 0.43 TCGA-90-A4ED-01 10 18242234 18242234 C T SLC39A12 Missense_Mutation p.S10F 0.24 tolerated_low_confidence(1) benign(0.001) TCGA-90-A4ED-01 10 18807869 18807869 G A CACNB2 Missense_Mutation p.D306N 0.23 deleterious(0.01) probably_damaging(1) TCGA-90-A4ED-01 10 26417388 26417388 C T MYO3A Missense_Mutation p.S728F 0.38 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 10 26457769 26457769 G A MYO3A Silent p.E1080E 0.22 TCGA-90-A4ED-01 10 29776310 29776310 G A SVIL Intron 0.39 TCGA-90-A4ED-01 10 30315235 30315235 G A KIAA1462 Missense_Mutation p.S1281F 0.23 deleterious(0) benign(0.445) TCGA-90-A4ED-01 10 31799765 31799765 G A ZEB1 Missense_Mutation p.E217K 0.33 deleterious(0.03) possibly_damaging(0.796) TCGA-90-A4ED-01 10 323214 323214 G A DIP2C 3'UTR 0.29 TCGA-90-A4ED-01 10 32323670 32323670 G A KIF5B Silent p.I353I 0.35 TCGA-90-A4ED-01 10 32983855 32983855 C T C10ORF68 Missense_Mutation p.S105L 0.39 deleterious(0) probably_damaging(0.943) TCGA-90-A4ED-01 10 38242123 38242123 C T ZNF25 Silent p.R101R 0.26 TCGA-90-A4ED-01 10 38407040 38407040 C T ZNF37A Missense_Mutation p.H321Y 0.32 deleterious(0) probably_damaging(0.943) TCGA-90-A4ED-01 10 43694624 43694624 G A RASGEF1A Missense_Mutation p.R290W 0.33 deleterious(0) probably_damaging(0.997) TCGA-90-A4ED-01 10 43871643 43871643 G A FXYD4 3'UTR 0.20 TCGA-90-A4ED-01 10 45891383 45891383 C T ALOX5 Nonsense_Mutation p.R144* 0.25 TCGA-90-A4ED-01 10 48429154 48429154 G A GDF10 Silent p.I244I 0.26 TCGA-90-A4ED-01 10 50121628 50121628 G A LRRC18 Silent p.S191S 0.44 TCGA-90-A4ED-01 10 50708593 50708593 G A ERCC6 Missense_Mutation p.S559L 0.36 tolerated(0.08) benign(0.139) TCGA-90-A4ED-01 10 50873045 50873045 G A CHAT Missense_Mutation p.A734T 0.26 tolerated(0.27) benign(0.009) TCGA-90-A4ED-01 10 51465379 51465379 G A AGAP7 Silent p.S359S 0.32 TCGA-90-A4ED-01 10 51555822 51555822 G A MSMB Missense_Mutation p.G32E 0.18 tolerated(0.45) probably_damaging(0.999) TCGA-90-A4ED-01 10 51556774 51556774 A T MSMB Nonsense_Mutation p.K45* 0.35 TCGA-90-A4ED-01 10 52595848 52595848 C A A1CF Missense_Mutation p.R205M 0.28 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 10 54528056 54528056 C T MBL2 Silent p.V196V 0.40 TCGA-90-A4ED-01 10 55582249 55582249 G A PCDH15 Missense_Mutation p.P1748L 0.29 tolerated_low_confidence(0.19) unknown(0) TCGA-90-A4ED-01 10 55849813 55849813 C T PCDH15 Missense_Mutation p.R643Q 0.26 tolerated(0.14) probably_damaging(0.98) TCGA-90-A4ED-01 10 55912985 55912985 C T PCDH15 Silent p.Q553Q 0.24 TCGA-90-A4ED-01 10 5951160 5951160 C T FBXO18 Missense_Mutation p.P359L 0.25 deleterious(0.01) possibly_damaging(0.786) TCGA-90-A4ED-01 10 5995037 5995037 C T IL15RA 3'UTR 0.34 TCGA-90-A4ED-01 10 61413496 61413496 G A SLC16A9 Missense_Mutation p.H430Y 0.32 deleterious(0.01) probably_damaging(0.953) TCGA-90-A4ED-01 10 61832320 61832320 G A ANK3 Silent p.L2773L 0.33 TCGA-90-A4ED-01 10 62539923 62539923 T C CDK1 5'UTR 0.37 TCGA-90-A4ED-01 10 63983015 63983015 G A RTKN2 Silent p.L255L 0.23 TCGA-90-A4ED-01 10 70182040 70182040 G A DNA2 Missense_Mutation p.P966L 0.30 tolerated(0.05) benign(0.008) TCGA-90-A4ED-01 10 71877624 71877624 G A AIFM2 Missense_Mutation p.S187F 0.24 deleterious(0.05) benign(0.021) TCGA-90-A4ED-01 10 72492039 72492039 C T ADAMTS14 Missense_Mutation p.P381S 0.22 deleterious(0.03) possibly_damaging(0.859) TCGA-90-A4ED-01 10 72492040 72492040 C T ADAMTS14 Missense_Mutation p.P381L 0.24 tolerated(0.12) probably_damaging(0.991) TCGA-90-A4ED-01 10 73039716 73039716 C T UNC5B Missense_Mutation p.P73L 0.25 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 10 73039717 73039717 C T UNC5B Silent p.P73P 0.25 TCGA-90-A4ED-01 10 73048396 73048396 G C UNC5B Missense_Mutation p.E325Q 0.39 deleterious(0.01) probably_damaging(0.992) TCGA-90-A4ED-01 10 73466671 73466671 G A C10orf105 3'Flank 0.50 TCGA-90-A4ED-01 10 73822532 73822532 C T SPOCK2 Missense_Mutation p.G421S 0.22 deleterious_low_confidence(0) unknown(0) TCGA-90-A4ED-01 10 74127984 74127984 G A MICU1 Missense_Mutation p.T467I 0.32 deleterious(0) benign(0.06) TCGA-90-A4ED-01 10 74695255 74695255 C T PLA2G12B 3'UTR 0.23 TCGA-90-A4ED-01 10 75107967 75107967 G A TTC18 Missense_Mutation p.P126S 0.31 deleterious(0.02) probably_damaging(0.938) TCGA-90-A4ED-01 10 75157980 75157980 G A ANXA7 Missense_Mutation p.P73L 0.23 deleterious(0.04) unknown(0) TCGA-90-A4ED-01 10 75302567 75302567 G A USP54 Missense_Mutation p.S189F 0.20 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 10 75397651 75397651 C T MYOZ1 Missense_Mutation p.G35S 0.20 deleterious(0.01) probably_damaging(1) TCGA-90-A4ED-01 10 75576803 75576803 G A CAMK2G Silent p.F472F 0.34 TCGA-90-A4ED-01 10 76781772 76781772 G A KAT6B Missense_Mutation p.R1052Q 0.28 benign(0.023) TCGA-90-A4ED-01 10 76803739 76803739 C T DUPD1 Silent p.A79A 0.29 TCGA-90-A4ED-01 10 77159633 77159633 G A ZNF503 Missense_Mutation p.A272V 0.23 tolerated(0.27) benign(0.055) TCGA-90-A4ED-01 10 7788624 7788624 G A ITIH2 Missense_Mutation p.E884K 0.36 deleterious(0.01) possibly_damaging(0.85) TCGA-90-A4ED-01 10 79571735 79571735 G A DLG5 Silent p.I1423I 0.39 TCGA-90-A4ED-01 10 79737217 79737217 G A POLR3A 3'UTR 0.23 TCGA-90-A4ED-01 10 85981521 85981521 C T LRIT2 3'UTR 0.50 TCGA-90-A4ED-01 10 85984783 85984783 G A LRIT2 Silent p.P66P 0.25 TCGA-90-A4ED-01 10 85991746 85991746 G A LRIT1 Silent p.S603S 0.31 TCGA-90-A4ED-01 10 85992308 85992308 C T LRIT1 Missense_Mutation p.G416E 0.38 tolerated(0.26) benign(0.033) TCGA-90-A4ED-01 10 85992309 85992309 C T LRIT1 Missense_Mutation p.G416R 0.39 tolerated(0.12) benign(0.056) TCGA-90-A4ED-01 10 85992503 85992503 G A LRIT1 Missense_Mutation p.S351F 0.32 tolerated(0.12) benign(0.004) TCGA-90-A4ED-01 10 86008685 86008685 C T RGR Missense_Mutation p.P86S 0.46 deleterious(0.02) probably_damaging(0.995) TCGA-90-A4ED-01 10 87379753 87379753 G A GRID1 Missense_Mutation p.A744V 0.12 deleterious(0.03) benign(0.014) TCGA-90-A4ED-01 10 88446896 88446896 G A LDB3 Missense_Mutation p.E254K 0.34 tolerated(0.07) probably_damaging(0.981) TCGA-90-A4ED-01 10 93000322 93000322 C T PCGF5 Missense_Mutation p.P65L 0.29 deleterious(0) possibly_damaging(0.472) TCGA-90-A4ED-01 10 95556873 95556873 C T LGI1 Silent p.I329I 0.22 TCGA-90-A4ED-01 10 95720194 95720194 C T PIPSL RNA 0.30 TCGA-90-A4ED-01 10 95720195 95720195 C T PIPSL RNA 0.29 TCGA-90-A4ED-01 10 96039731 96039731 C T PLCE1 Intron 0.42 TCGA-90-A4ED-01 10 96805708 96805708 C T CYP2C8 Missense_Mutation p.E274K 0.34 deleterious(0.02) benign(0.092) TCGA-90-A4ED-01 10 98006745 98006745 G A BLNK Silent p.I36I 0.27 TCGA-90-A4ED-01 10 98380275 98380275 C T PIK3AP1 Missense_Mutation p.S592N 0.33 tolerated(0.06) possibly_damaging(0.864) TCGA-90-A4ED-01 10 98744557 98744557 C T C10orf12 Missense_Mutation p.P1137L 0.15 deleterious(0.01) possibly_damaging(0.57) TCGA-90-A4ED-01 10 98766454 98766454 G A SLIT1 Missense_Mutation p.P1122L 0.25 deleterious(0) benign(0.001) TCGA-90-A4ED-01 10 99118353 99118353 C T RRP12 Silent p.K1244K 0.24 TCGA-90-A4ED-01 10 99240775 99240775 G A MMS19 Silent p.P62P 0.33 TCGA-90-A4ED-01 11 100999621 100999621 G A PGR Missense_Mutation p.P61S 0.24 tolerated_low_confidence(0.11) benign(0.005) TCGA-90-A4ED-01 11 101776524 101776524 C T ANGPTL5 Missense_Mutation p.R99K 0.27 tolerated_low_confidence(0.05) benign(0.221) TCGA-90-A4ED-01 11 1017840 1017840 G A MUC6 Missense_Mutation p.P1654L 0.07 unknown(0) TCGA-90-A4ED-01 11 105009625 105009625 C T CARD18 Missense_Mutation p.G63E 0.24 tolerated(0.85) benign(0.216) TCGA-90-A4ED-01 11 107524931 107524931 G A ELMOD1 Silent p.R227R 0.42 TCGA-90-A4ED-01 11 108199839 108199839 C T ATM Missense_Mutation p.S2394L 0.44 deleterious(0) probably_damaging(0.975) TCGA-90-A4ED-01 11 1101921 1101921 G A MUC2 Missense_Mutation p.G2562E 0.27 unknown(0) TCGA-90-A4ED-01 11 111753309 111753309 C T C11orf1 Missense_Mutation p.P88L 0.19 deleterious(0.05) probably_damaging(0.971) TCGA-90-A4ED-01 11 111951238 111951238 C T C11orf57 Silent p.S92S 0.20 TCGA-90-A4ED-01 11 113073141 113073141 C T NCAM1 Silent p.I90I 0.17 TCGA-90-A4ED-01 11 113650686 113650686 C T CLDN25 Nonsense_Mutation p.R57* 0.28 TCGA-90-A4ED-01 11 113815346 113815346 C T HTR3B Missense_Mutation p.S320F 0.20 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 11 113815347 113815347 C T HTR3B Silent p.S320S 0.20 TCGA-90-A4ED-01 11 113816947 113816947 G A HTR3B 3'UTR 0.31 TCGA-90-A4ED-01 11 114392998 114392998 G A NXPE1 Missense_Mutation p.P304S 0.25 tolerated(0.08) probably_damaging(0.967) TCGA-90-A4ED-01 11 116692155 116692155 C T APOA4 Missense_Mutation p.E207K 0.32 tolerated(0.09) benign(0.342) TCGA-90-A4ED-01 11 116701514 116701514 C T APOC3 Silent p.S27S 0.35 TCGA-90-A4ED-01 11 117152097 117152097 C T RNF214 Missense_Mutation p.R405W 0.20 deleterious(0) probably_damaging(0.996) TCGA-90-A4ED-01 11 118374390 118374390 C T KMT2A Missense_Mutation p.P2595S 0.42 benign(0.026) TCGA-90-A4ED-01 11 118377122 118377122 C T KMT2A Silent p.S3505S 0.28 TCGA-90-A4ED-01 11 118403144 118403144 C T TMEM25 Missense_Mutation p.S117L 0.23 deleterious(0.02) benign(0.061) TCGA-90-A4ED-01 11 118404231 118404231 C T TMEM25 Missense_Mutation p.A257V 0.25 tolerated(1) benign(0.004) TCGA-90-A4ED-01 11 119216493 119216493 G A MFRP Silent p.S139S 0.29 TCGA-90-A4ED-01 11 119243505 119243505 C T USP2 Missense_Mutation p.R229Q 0.21 tolerated(0.16) benign(0.421) TCGA-90-A4ED-01 11 120776041 120776041 G A GRIK4 Missense_Mutation p.E439K 0.19 tolerated(0.3) benign(0.341) TCGA-90-A4ED-01 11 120996150 120996150 C T TECTA Missense_Mutation p.S448F 0.34 deleterious(0) possibly_damaging(0.653) TCGA-90-A4ED-01 11 1213300 1213300 C T MUC5AC RNA 0.18 TCGA-90-A4ED-01 11 121495914 121495914 C T SORL1 Nonsense_Mutation p.Q2098* 0.31 TCGA-90-A4ED-01 11 123676682 123676682 C T OR6M1 Missense_Mutation p.D126N 0.22 tolerated(1) benign(0) TCGA-90-A4ED-01 11 123810601 123810601 C T OR4D5 Missense_Mutation p.S93F 0.28 deleterious(0.01) probably_damaging(0.991) TCGA-90-A4ED-01 11 123847572 123847572 G A OR10S1 Missense_Mutation p.P276L 0.20 deleterious(0.02) probably_damaging(0.981) TCGA-90-A4ED-01 11 123886683 123886683 G A OR10G4 Missense_Mutation p.M134I 0.31 tolerated(1) benign(0.009) TCGA-90-A4ED-01 11 124252820 124252820 G A OR8B2 Silent p.V140V 0.46 TCGA-90-A4ED-01 11 124790034 124790034 C T HEPACAM 3'UTR 0.31 TCGA-90-A4ED-01 11 124794914 124794914 G A HEPACAM Missense_Mutation p.T46I 0.27 tolerated(0.27) benign(0.208) TCGA-90-A4ED-01 11 124805859 124805859 A T HEPACAM Missense_Mutation p.L15Q 0.21 tolerated(0.15) benign(0.109) TCGA-90-A4ED-01 11 125617303 125617303 C T PATE1 Missense_Mutation p.P41S 0.31 tolerated(0.74) benign(0.013) TCGA-90-A4ED-01 11 125889658 125889658 G T CDON Missense_Mutation p.L118I 0.21 tolerated(0.23) possibly_damaging(0.668) TCGA-90-A4ED-01 11 128638150 128638150 G A FLI1 Missense_Mutation p.R123K 0.25 tolerated(0.1) benign(0.029) TCGA-90-A4ED-01 11 128680541 128680541 C T FLI1 Silent p.L339L 0.56 TCGA-90-A4ED-01 11 128709647 128709647 G A KCNJ1 Silent p.S183S 0.26 TCGA-90-A4ED-01 11 130778030 130778030 C T SNX19 Intron 0.55 TCGA-90-A4ED-01 11 132082035 132082035 C T NTM Missense_Mutation p.P174S 0.41 tolerated(0.16) benign(0.053) TCGA-90-A4ED-01 11 133801025 133801025 C T IGSF9B Missense_Mutation p.G458E 0.28 deleterious(0) probably_damaging(0.993) TCGA-90-A4ED-01 11 134062781 134062781 G A NCAPD3 Silent p.I616I 0.52 TCGA-90-A4ED-01 11 13729601 13729601 C T FAR1 Missense_Mutation p.P174S 0.29 deleterious(0.01) possibly_damaging(0.507) TCGA-90-A4ED-01 11 14990398 14990398 C T CALCA Missense_Mutation p.D125N 0.36 tolerated(0.58) benign(0.001) TCGA-90-A4ED-01 11 16424289 16424289 G A SOX6 Intron 0.37 TCGA-90-A4ED-01 11 17177169 17177169 G A PIK3C2A Missense_Mutation p.P358L 0.35 tolerated(0.07) benign(0.001) TCGA-90-A4ED-01 11 17177170 17177170 G A PIK3C2A Missense_Mutation p.P358S 0.35 tolerated(0.25) benign(0.001) TCGA-90-A4ED-01 11 18231245 18231245 G A RP11-113D6.10 Missense_Mutation p.G11R 0.11 tolerated_low_confidence(0.13) possibly_damaging(0.541) TCGA-90-A4ED-01 11 18231774 18231774 G A RP11-113D6.10 3'UTR 0.31 TCGA-90-A4ED-01 11 18955609 18955609 C T MRGPRX1 Nonsense_Mutation p.W241* 0.18 TCGA-90-A4ED-01 11 20139859 20139859 C T NAV2 3'UTR 0.30 TCGA-90-A4ED-01 11 20676352 20676352 G A SLC6A5 Missense_Mutation p.G778R 0.31 deleterious(0.01) benign(0.189) TCGA-90-A4ED-01 11 21592372 21592372 C T NELL1 Silent p.F681F 0.42 TCGA-90-A4ED-01 11 21596521 21596521 G A NELL1 Missense_Mutation p.G796R 0.18 deleterious(0) probably_damaging(0.991) TCGA-90-A4ED-01 11 22398088 22398088 C T SLC17A6 Intron 0.36 TCGA-90-A4ED-01 11 22646777 22646777 C T FANCF Missense_Mutation p.E194K 0.25 deleterious(0.04) benign(0.438) TCGA-90-A4ED-01 11 24518825 24518825 C T LUZP2 Silent p.L12L 0.16 TCGA-90-A4ED-01 11 32410618 32410618 G A WT1 Nonsense_Mutation p.Q514* 0.21 TCGA-90-A4ED-01 11 3249943 3249943 G A MRGPRE Silent p.S28S 0.28 TCGA-90-A4ED-01 11 33065318 33065318 G A TCP11L1 5'UTR 0.14 TCGA-90-A4ED-01 11 3660016 3660016 C T ART5 Silent p.L276L 0.21 TCGA-90-A4ED-01 11 3714502 3714502 G A NUP98 Missense_Mutation p.S1424F 0.36 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 11 3797170 3797170 G A NUP98 Missense_Mutation p.S146F 0.38 deleterious(0) probably_damaging(0.917) TCGA-90-A4ED-01 11 40136561 40136561 C T LRRC4C Missense_Mutation p.V428M 0.35 deleterious(0) probably_damaging(0.986) TCGA-90-A4ED-01 11 43465733 43465733 C T TTC17 Missense_Mutation p.P880L 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-90-A4ED-01 11 45948283 45948283 C T GYLTL1B Silent p.L396L 0.05 TCGA-90-A4ED-01 11 46765751 46765751 G A CKAP5 Missense_Mutation p.S1974F 0.26 deleterious(0) possibly_damaging(0.489) TCGA-90-A4ED-01 11 46772126 46772126 G A CKAP5 Silent p.F1832F 0.17 TCGA-90-A4ED-01 11 47204295 47204295 G A PACSIN3 5'UTR 0.31 TCGA-90-A4ED-01 11 47204296 47204296 G A PACSIN3 5'UTR 0.31 TCGA-90-A4ED-01 11 47296474 47296474 C T MADD Silent p.S141S 0.37 TCGA-90-A4ED-01 11 47436352 47436352 C A SLC39A13 Silent p.R271R 0.24 TCGA-90-A4ED-01 11 47469668 47469668 A T RAPSN Missense_Mutation p.L76Q 0.16 tolerated(0.14) possibly_damaging(0.877) TCGA-90-A4ED-01 11 47711717 47711717 G A AGBL2 Silent p.S514S 0.21 TCGA-90-A4ED-01 11 4842963 4842963 C T OR51F2 Silent p.F116F 0.36 TCGA-90-A4ED-01 11 49178334 49178334 C T FOLH1 Missense_Mutation p.D520N 0.22 deleterious(0) probably_damaging(0.915) TCGA-90-A4ED-01 11 4976080 4976080 C T OR51A2 Missense_Mutation p.M288I 0.64 tolerated(0.13) benign(0.158) TCGA-90-A4ED-01 11 49974090 49974090 G A OR4C13 Missense_Mutation p.G39E 0.25 deleterious_low_confidence(0.01) benign(0.157) TCGA-90-A4ED-01 11 50003589 50003589 C T OR4C12 Missense_Mutation p.G150E 0.30 deleterious_low_confidence(0) possibly_damaging(0.585) TCGA-90-A4ED-01 11 5142582 5142582 G A OR52A4 RNA 0.34 TCGA-90-A4ED-01 11 5153713 5153713 C T OR52A5 Missense_Mutation p.E54K 0.31 deleterious(0) probably_damaging(0.927) TCGA-90-A4ED-01 11 5173161 5173161 C T OR52A1 Missense_Mutation p.G147R 0.17 deleterious(0) benign(0.141) TCGA-90-A4ED-01 11 5345040 5345040 G A OR51B2 Missense_Mutation p.S163L 0.41 tolerated(0.65) benign(0.008) TCGA-90-A4ED-01 11 5364285 5364285 G A OR51B5 Missense_Mutation p.P157L 0.21 tolerated(1) benign(0.02) TCGA-90-A4ED-01 11 5410977 5410977 C T OR51M1 Missense_Mutation p.H117Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 11 5443766 5443766 G A OR51Q1 Missense_Mutation p.M112I 0.30 tolerated(0.08) benign(0.049) TCGA-90-A4ED-01 11 55135452 55135452 G A OR4A15 Missense_Mutation p.M31I 0.44 deleterious_low_confidence(0) benign(0.072) TCGA-90-A4ED-01 11 55135721 55135721 C T OR4A15 Missense_Mutation p.S121F 0.19 deleterious_low_confidence(0.01) benign(0.203) TCGA-90-A4ED-01 11 55136144 55136144 G A OR4A15 Missense_Mutation p.R262Q 0.34 tolerated_low_confidence(0.06) benign(0.19) TCGA-90-A4ED-01 11 55322305 55322305 C T OR4C15 Missense_Mutation p.R175C 0.38 deleterious_low_confidence(0.02) possibly_damaging(0.897) TCGA-90-A4ED-01 11 55371633 55371633 T C OR4C11 Missense_Mutation p.T73A 0.19 deleterious(0.01) benign(0.437) TCGA-90-A4ED-01 11 55419162 55419162 G A OR4S2 Silent p.T261T 0.22 TCGA-90-A4ED-01 11 55541105 55541105 C T OR5D13 Silent p.F64F 0.28 TCGA-90-A4ED-01 11 55579518 55579518 C T OR5L1 Silent p.I192I 0.23 TCGA-90-A4ED-01 11 55587994 55587994 G A OR5D18 Missense_Mutation p.D297N 0.30 deleterious(0) possibly_damaging(0.883) TCGA-90-A4ED-01 11 55595330 55595330 G A OR5L2 Missense_Mutation p.M212I 0.21 tolerated(0.29) benign(0.001) TCGA-90-A4ED-01 11 55595372 55595372 G A OR5L2 Silent p.L226L 0.45 TCGA-90-A4ED-01 11 55595622 55595622 C T OR5L2 Missense_Mutation p.H310Y 0.28 tolerated(0.7) benign(0) TCGA-90-A4ED-01 11 55798361 55798361 C T OR5AS1 Missense_Mutation p.S156L 0.21 deleterious(0.03) possibly_damaging(0.886) TCGA-90-A4ED-01 11 55861043 55861043 C T OR8I2 Missense_Mutation p.S87F 0.32 tolerated(0.1) benign(0.013) TCGA-90-A4ED-01 11 55861044 55861044 C T OR8I2 Silent p.S87S 0.33 TCGA-90-A4ED-01 11 55927408 55927408 G A OR8K5 Missense_Mutation p.P129L 0.18 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-90-A4ED-01 11 55927455 55927455 G A OR8K5 Silent p.F113F 0.42 TCGA-90-A4ED-01 11 56020479 56020479 C T OR5T3 Silent p.F268F 0.27 TCGA-90-A4ED-01 11 56057728 56057728 G A OR8H1 Nonsense_Mutation p.Q271* 0.20 TCGA-90-A4ED-01 11 56230241 56230241 G A OR5M9 Missense_Mutation p.L213F 0.21 tolerated(0.07) benign(0.182) TCGA-90-A4ED-01 11 56230242 56230242 G A OR5M9 Silent p.V212V 0.21 TCGA-90-A4ED-01 11 56309858 56309858 C T OR5M11 Silent p.R292R 0.26 TCGA-90-A4ED-01 11 56344339 56344339 G A OR5M10 Missense_Mutation p.P287S 0.32 deleterious(0.01) probably_damaging(0.915) TCGA-90-A4ED-01 11 56756814 56756814 C T OR5AK2 Silent p.I142I 0.33 TCGA-90-A4ED-01 11 57003691 57003691 G A APLNR Missense_Mutation p.P263L 0.32 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 11 57106007 57106007 C T P2RX3 5'UTR 0.27 TCGA-90-A4ED-01 11 57310775 57310775 G A SMTNL1 Silent p.G238G 0.18 TCGA-90-A4ED-01 11 57313471 57313471 G A SMTNL1 Silent p.R363R 0.34 TCGA-90-A4ED-01 11 57886267 57886267 G A OR9I1 Missense_Mutation p.S217F 0.27 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 11 57947463 57947463 C T OR9Q1 Missense_Mutation p.P183S 0.35 deleterious(0.03) probably_damaging(1) TCGA-90-A4ED-01 11 57982302 57982302 G A OR1S1 Missense_Mutation p.G29E 0.21 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 11 57996058 57996058 G A OR10Q1 Missense_Mutation p.S97L 0.32 deleterious(0) benign(0.102) TCGA-90-A4ED-01 11 58274740 58274740 G A OR5B21 Missense_Mutation p.P280L 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-90-A4ED-01 11 5862852 5862852 C T OR52E6 Silent p.K92K 0.35 TCGA-90-A4ED-01 11 59190038 59190038 G A OR5A2 Missense_Mutation p.P130L 0.45 deleterious(0.02) benign(0.242) TCGA-90-A4ED-01 11 59245401 59245401 C T OR4D10 Missense_Mutation p.P167S 0.18 deleterious(0.01) probably_damaging(1) TCGA-90-A4ED-01 11 59271273 59271273 C T OR4D11 Silent p.S75S 0.36 TCGA-90-A4ED-01 11 59271432 59271432 G T OR4D11 Missense_Mutation p.K128N 0.26 deleterious(0.04) possibly_damaging(0.69) TCGA-90-A4ED-01 11 59271433 59271433 C T OR4D11 Missense_Mutation p.P129S 0.25 deleterious(0.01) possibly_damaging(0.725) TCGA-90-A4ED-01 11 59271434 59271434 C T OR4D11 Missense_Mutation p.P129L 0.26 deleterious(0.01) probably_damaging(0.979) TCGA-90-A4ED-01 11 59604791 59604791 C T GIF Missense_Mutation p.E243K 0.22 tolerated(0.6) benign(0.001) TCGA-90-A4ED-01 11 59633874 59633874 C T TCN1 Missense_Mutation p.E24K 0.21 tolerated(1) benign(0.008) TCGA-90-A4ED-01 11 60064772 60064772 G A MS4A4A Missense_Mutation p.G102R 0.25 tolerated(0.2) benign(0.299) TCGA-90-A4ED-01 11 60075720 60075720 G A MS4A4A 3'UTR 0.33 TCGA-90-A4ED-01 11 6007822 6007822 G A OR52L1 Silent p.I113I 0.13 TCGA-90-A4ED-01 11 60230539 60230539 G A MS4A1 Missense_Mutation p.G75E 0.25 tolerated(0.76) benign(0.093) TCGA-90-A4ED-01 11 605292 605292 C T PHRF1 Silent p.P442P 0.22 TCGA-90-A4ED-01 11 60694824 60694824 C T TMEM132A Silent p.L83L 0.31 TCGA-90-A4ED-01 11 607537 607537 G A PHRF1 Missense_Mutation p.R693Q 0.18 tolerated(0.4) benign(0) TCGA-90-A4ED-01 11 608308 608308 C T PHRF1 Missense_Mutation p.T950I 0.40 tolerated(0.35) possibly_damaging(0.595) TCGA-90-A4ED-01 11 608309 608309 C T PHRF1 Silent p.T950T 0.40 TCGA-90-A4ED-01 11 60886948 60886948 C T CD5 Nonsense_Mutation p.Q236* 0.36 TCGA-90-A4ED-01 11 60900731 60900731 G A VPS37C Missense_Mutation p.S115F 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-90-A4ED-01 11 61605306 61605306 C T FADS2 Silent p.P88P 0.11 TCGA-90-A4ED-01 11 61917625 61917625 G A INCENP Missense_Mutation p.D830N 0.22 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 11 62416600 62416600 G A INTS5 Missense_Mutation p.H318Y 0.33 deleterious(0.01) possibly_damaging(0.791) TCGA-90-A4ED-01 11 62652750 62652750 C T SLC3A2 Missense_Mutation p.S409F 0.22 tolerated(0.08) benign(0.023) TCGA-90-A4ED-01 11 62748784 62748784 C T SLC22A6 Missense_Mutation p.R290K 0.33 tolerated(0.73) benign(0.012) TCGA-90-A4ED-01 11 62782350 62782350 C T SLC22A8 Silent p.P27P 0.27 TCGA-90-A4ED-01 11 62911033 62911033 C T SLC22A24 Silent p.L73L 0.14 TCGA-90-A4ED-01 11 63057770 63057770 C T SLC22A10 Missense_Mutation p.P45S 0.44 deleterious(0) probably_damaging(0.995) TCGA-90-A4ED-01 11 63235936 63235936 C T HRASLS5 Missense_Mutation p.G126E 0.20 tolerated(0.14) possibly_damaging(0.876) TCGA-90-A4ED-01 11 63672501 63672501 C T MARK2 Silent p.S640S 0.25 TCGA-90-A4ED-01 11 64567124 64567124 G A MAP4K2 Missense_Mutation p.S316F 0.15 deleterious(0) possibly_damaging(0.467) TCGA-90-A4ED-01 11 64794953 64794953 G A SNX15 5'UTR 0.48 TCGA-90-A4ED-01 11 64812706 64812706 T C NAALADL1 3'UTR 0.38 TCGA-90-A4ED-01 11 64821751 64821751 G A NAALADL1 Silent p.F321F 0.36 TCGA-90-A4ED-01 11 64875280 64875280 C T VPS51 Missense_Mutation p.H171Y 0.27 deleterious(0.04) possibly_damaging(0.694) TCGA-90-A4ED-01 11 64940288 64940288 C T SPDYC Missense_Mutation p.S217F 0.23 tolerated(0.34) probably_damaging(0.942) TCGA-90-A4ED-01 11 65421968 65421968 G A RELA Missense_Mutation p.P513S 0.29 tolerated_low_confidence(0.13) benign(0.138) TCGA-90-A4ED-01 11 65421969 65421969 G A RELA Silent p.D512D 0.30 TCGA-90-A4ED-01 11 66136613 66136613 G A SLC29A2 Silent p.A111A 0.50 TCGA-90-A4ED-01 11 66190339 66190339 C T NPAS4 Missense_Mutation p.P209S 0.19 tolerated(0.52) benign(0.041) TCGA-90-A4ED-01 11 66205671 66205671 C T MRPL11 Silent p.K61K 0.34 TCGA-90-A4ED-01 11 6648522 6648522 G A DCHS1 Silent p.A1916A 0.35 TCGA-90-A4ED-01 11 66813284 66813284 G A SYT12 Missense_Mutation p.R343K 0.21 tolerated(0.36) benign(0.047) TCGA-90-A4ED-01 11 67021040 67021040 C T KDM2A Missense_Mutation p.P1017S 0.27 tolerated(0.39) benign(0.005) TCGA-90-A4ED-01 11 67399263 67399263 G A TBX10 Missense_Mutation p.P324L 0.44 deleterious(0) benign(0.344) TCGA-90-A4ED-01 11 6891406 6891406 C T OR10A2 Missense_Mutation p.P141S 0.23 tolerated(0.05) possibly_damaging(0.764) TCGA-90-A4ED-01 11 6913289 6913289 G A OR2D2 Missense_Mutation p.S148L 0.20 deleterious(0) possibly_damaging(0.904) TCGA-90-A4ED-01 11 6913419 6913419 G A OR2D2 Missense_Mutation p.L105F 0.36 tolerated(0.07) benign(0.159) TCGA-90-A4ED-01 11 70331598 70331598 C T SHANK2 Silent p.R1601R 0.29 TCGA-90-A4ED-01 11 70331647 70331647 G A SHANK2 Missense_Mutation p.P1585L 0.45 deleterious(0.04) possibly_damaging(0.713) TCGA-90-A4ED-01 11 71146796 71146796 G C DHCR7 Missense_Mutation p.F351L 0.25 deleterious(0.02) probably_damaging(1) TCGA-90-A4ED-01 11 71907002 71907002 C T FOLR1 Silent p.P185P 0.21 TCGA-90-A4ED-01 11 73076585 73076585 C T ARHGEF17 Missense_Mutation p.P1901S 0.22 deleterious(0.02) possibly_damaging(0.779) TCGA-90-A4ED-01 11 73689327 73689327 G A UCP2 Missense_Mutation p.P33S 0.26 deleterious(0) probably_damaging(0.992) TCGA-90-A4ED-01 11 74168439 74168439 G A KCNE3 Missense_Mutation p.S57F 0.20 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 11 74414511 74414511 C T CHRDL2 Missense_Mutation p.G262E 0.16 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 11 74415664 74415664 C T CHRDL2 Silent p.G206G 0.33 TCGA-90-A4ED-01 11 76371105 76371105 G A LRRC32 Missense_Mutation p.P511L 0.12 deleterious(0) possibly_damaging(0.881) TCGA-90-A4ED-01 11 7669768 7669768 G A PPFIBP2 Silent p.K599K 0.31 TCGA-90-A4ED-01 11 7672911 7672911 G A PPFIBP2 Missense_Mutation p.D758N 0.23 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 11 8414052 8414052 G A STK33 3'UTR 0.19 TCGA-90-A4ED-01 11 86518762 86518762 C T PRSS23 Missense_Mutation p.A26V 0.28 tolerated(0.35) benign(0.004) TCGA-90-A4ED-01 11 88780685 88780685 G A GRM5 Missense_Mutation p.S119F 0.16 deleterious(0) probably_damaging(0.974) TCGA-90-A4ED-01 11 89405083 89405083 G A FOLH1B RNA 0.20 TCGA-90-A4ED-01 11 89768777 89768777 C T TRIM49C Missense_Mutation p.A133V 0.12 tolerated(0.17) possibly_damaging(0.53) TCGA-90-A4ED-01 11 89896507 89896507 G A NAALAD2 Missense_Mutation p.D369N 0.23 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 11 93127718 93127718 C T CCDC67 Nonsense_Mutation p.Q379* 0.22 TCGA-90-A4ED-01 11 9607022 9607022 C T WEE1 Missense_Mutation p.P473L 0.35 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 12 100811862 100811862 G A SLC17A8 Silent p.G451G 0.22 TCGA-90-A4ED-01 12 101012316 101012316 C T GAS2L3 Missense_Mutation p.S200F 0.11 deleterious(0) possibly_damaging(0.781) TCGA-90-A4ED-01 12 101012317 101012317 C T GAS2L3 Silent p.S200S 0.11 TCGA-90-A4ED-01 12 101017912 101017912 G A GAS2L3 Silent p.K443K 0.35 TCGA-90-A4ED-01 12 102056301 102056301 C T MYBPC1 Missense_Mutation p.P708L 0.14 tolerated(0.49) probably_damaging(0.999) TCGA-90-A4ED-01 12 10275855 10275855 G A CLEC7A Silent p.F200F 0.25 TCGA-90-A4ED-01 12 104077004 104077004 G A STAB2 Missense_Mutation p.G943R 0.28 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 12 104187020 104187020 A C NT5DC3 Missense_Mutation p.V314G 0.34 deleterious(0.02) possibly_damaging(0.685) TCGA-90-A4ED-01 12 104461789 104461789 C T HCFC2 Missense_Mutation p.P126L 0.17 deleterious(0) probably_damaging(0.991) TCGA-90-A4ED-01 12 105151205 105151205 C G CHST11 Missense_Mutation p.A228G 0.12 deleterious(0.04) possibly_damaging(0.819) TCGA-90-A4ED-01 12 105546170 105546170 G A KIAA1033 Missense_Mutation p.G900E 0.09 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 12 108589645 108589645 C T WSCD2 Silent p.F12F 0.35 TCGA-90-A4ED-01 12 108686186 108686186 C T CMKLR1 Missense_Mutation p.G185E 0.14 tolerated(0.18) benign(0.049) TCGA-90-A4ED-01 12 109644635 109644635 C T ACACB Silent p.L1012L 0.18 TCGA-90-A4ED-01 12 109671847 109671847 C T ACACB Silent p.S1448S 0.18 TCGA-90-A4ED-01 12 109679009 109679009 C T ACACB Silent p.L1649L 0.09 TCGA-90-A4ED-01 12 110231371 110231371 A G TRPV4 Missense_Mutation p.V540A 0.30 deleterious(0.02) benign(0.434) TCGA-90-A4ED-01 12 110290446 110290446 G A GLTP Missense_Mutation p.L182F 0.31 tolerated(0.06) benign(0.005) TCGA-90-A4ED-01 12 110874430 110874430 G A ARPC3 Missense_Mutation p.P104L 0.15 tolerated(0.52) possibly_damaging(0.876) TCGA-90-A4ED-01 12 110878166 110878166 G A ARPC3 Missense_Mutation p.A45V 0.34 tolerated(0.21) benign(0.179) TCGA-90-A4ED-01 12 110939904 110939904 C T VPS29 5'UTR 0.43 TCGA-90-A4ED-01 12 111321953 111321953 G A CCDC63 Missense_Mutation p.D325N 0.35 tolerated(0.13) benign(0.203) TCGA-90-A4ED-01 12 11138722 11138722 G A TAS2R50 Silent p.I246I 0.44 TCGA-90-A4ED-01 12 113388595 113388595 C T OAS3 Missense_Mutation p.P491L 0.26 tolerated(0.23) benign(0.017) TCGA-90-A4ED-01 12 113532879 113532879 C T DTX1 Silent p.A473A 0.20 TCGA-90-A4ED-01 12 11420522 11420522 G A PRB3 Intron 0.12 TCGA-90-A4ED-01 12 11420585 11420585 G A PRB3 Missense_Mutation p.R200C 0.15 deleterious(0.01) unknown(0) TCGA-90-A4ED-01 12 114261020 114261020 G A RBM19 3'UTR 0.10 TCGA-90-A4ED-01 12 11461671 11461671 G A PRB4 Silent p.P82P 0.20 TCGA-90-A4ED-01 12 11546524 11546524 G T PRB2 Missense_Mutation p.P163H 0.29 tolerated(0.09) unknown(0) TCGA-90-A4ED-01 12 11546638 11546638 C T PRB2 Missense_Mutation p.G125E 0.24 tolerated(0.09) unknown(0) TCGA-90-A4ED-01 12 11546759 11546759 C T PRB2 Missense_Mutation p.G85R 0.24 tolerated(0.14) unknown(0) TCGA-90-A4ED-01 12 11548471 11548471 G A PRB2 5'UTR 0.29 TCGA-90-A4ED-01 12 117187937 117187937 C T RNFT2 Silent p.S125S 0.31 TCGA-90-A4ED-01 12 119563246 119563246 C T SRRM4 Silent p.S192S 0.09 TCGA-90-A4ED-01 12 119968709 119968709 G A CCDC60 Silent p.E464E 0.17 TCGA-90-A4ED-01 12 12022410 12022410 C T ETV6 Silent p.N172N 0.27 TCGA-90-A4ED-01 12 120599780 120599780 G A GCN1L1 Missense_Mutation p.S749F 0.33 benign(0.326) TCGA-90-A4ED-01 12 120599834 120599834 G A GCN1L1 Missense_Mutation p.S731F 0.24 benign(0.444) TCGA-90-A4ED-01 12 120600896 120600896 G A GCN1L1 Silent p.I672I 0.31 TCGA-90-A4ED-01 12 121458617 121458617 G A OASL Missense_Mutation p.P431L 0.17 tolerated(0.07) benign(0.014) TCGA-90-A4ED-01 12 121947536 121947536 G A KDM2B Missense_Mutation p.P494L 0.32 deleterious(0) benign(0.23) TCGA-90-A4ED-01 12 122751011 122751011 G A VPS33A 5'UTR 0.24 TCGA-90-A4ED-01 12 123186721 123186721 C T HCAR2 3'UTR 0.23 TCGA-90-A4ED-01 12 123186722 123186722 C T HCAR2 3'UTR 0.23 TCGA-90-A4ED-01 12 123787445 123787445 G A SBNO1 Silent p.V1257V 0.38 TCGA-90-A4ED-01 12 124114956 124114956 G A EIF2B1 Silent p.S80S 0.15 TCGA-90-A4ED-01 12 124114957 124114957 G A EIF2B1 Missense_Mutation p.S80F 0.16 deleterious(0.02) benign(0.018) TCGA-90-A4ED-01 12 124330646 124330646 A C DNAH10 Missense_Mutation p.N1802T 0.24 probably_damaging(0.999) TCGA-90-A4ED-01 12 124383241 124383241 G A DNAH10 Missense_Mutation p.E3056K 0.71 possibly_damaging(0.596) TCGA-90-A4ED-01 12 125834149 125834149 C T TMEM132B Silent p.A68A 0.30 TCGA-90-A4ED-01 12 129566561 129566561 C T TMEM132D Missense_Mutation p.E556K 0.30 deleterious(0.01) benign(0.248) TCGA-90-A4ED-01 12 129569044 129569044 C T TMEM132D Silent p.R549R 0.10 TCGA-90-A4ED-01 12 130184492 130184492 C T TMEM132D Silent p.R277R 0.38 TCGA-90-A4ED-01 12 130185224 130185224 G A TMEM132D Silent p.I33I 0.11 TCGA-90-A4ED-01 12 130832683 130832683 G A PIWIL1 Missense_Mutation p.R230Q 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-90-A4ED-01 12 130921669 130921669 G A RIMBP2 Silent p.P591P 0.56 TCGA-90-A4ED-01 12 130921670 130921670 G A RIMBP2 Missense_Mutation p.P591L 0.56 deleterious(0.01) benign(0.037) TCGA-90-A4ED-01 12 131471869 131471869 C T GPR133 Silent p.I240I 0.35 TCGA-90-A4ED-01 12 132504679 132504679 C T EP400 Missense_Mutation p.P1455S 0.28 unknown(0) TCGA-90-A4ED-01 12 133393372 133393372 C - GOLGA3 Frame_Shift_Del p.E54Kfs*51 0.29 TCGA-90-A4ED-01 12 13716829 13716829 G A GRIN2B Missense_Mutation p.R1115C 0.25 tolerated(0.19) possibly_damaging(0.908) TCGA-90-A4ED-01 12 13716876 13716876 C T GRIN2B Missense_Mutation p.R1099H 0.43 tolerated(0.13) probably_damaging(0.999) TCGA-90-A4ED-01 12 14993598 14993598 G A ART4 Missense_Mutation p.L212F 0.26 tolerated(0.07) benign(0.16) TCGA-90-A4ED-01 12 176580 176580 G A IQSEC3 Missense_Mutation p.G178S 0.18 tolerated(0.36) benign(0.235) TCGA-90-A4ED-01 12 21011428 21011428 G A LST3 Silent p.P94P 0.38 TCGA-90-A4ED-01 12 21028248 21028248 C T SLCO1B3 Silent p.S269S 0.21 TCGA-90-A4ED-01 12 21450417 21450417 G A SLCO1A2 Silent p.F332F 0.27 TCGA-90-A4ED-01 12 21457481 21457481 T A SLCO1A2 Missense_Mutation p.M157L 0.22 tolerated(0.15) benign(0.014) TCGA-90-A4ED-01 12 25311449 25311449 A T CASC1 Missense_Mutation p.I52K 0.17 tolerated(1) benign(0.003) TCGA-90-A4ED-01 12 27800810 27800810 C T PPFIBP1 Intron 0.33 TCGA-90-A4ED-01 12 2794959 2794959 G A CACNA1C Silent p.R1925R 0.16 TCGA-90-A4ED-01 12 3128293 3128293 C T TEAD4 Silent p.F180F 0.39 TCGA-90-A4ED-01 12 31944812 31944812 C T H3F3C Missense_Mutation p.E97K 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.666) TCGA-90-A4ED-01 12 39711975 39711975 G T KIF21A Missense_Mutation p.L1270I 0.33 tolerated(0.46) possibly_damaging(0.549) TCGA-90-A4ED-01 12 39756951 39756951 T C KIF21A Missense_Mutation p.Y323C 0.31 deleterious(0) probably_damaging(0.986) TCGA-90-A4ED-01 12 40671780 40671780 C T LRRK2 Nonsense_Mutation p.Q678* 0.16 TCGA-90-A4ED-01 12 42853932 42853932 G A PRICKLE1 Silent p.I725I 0.25 TCGA-90-A4ED-01 12 46240678 46240678 C T ARID2 Missense_Mutation p.P513L 0.30 deleterious(0.01) benign(0.243) TCGA-90-A4ED-01 12 46754954 46754954 G A SLC38A2 Silent p.T487T 0.17 TCGA-90-A4ED-01 12 46754955 46754955 G A SLC38A2 Missense_Mutation p.T487I 0.18 tolerated(1) benign(0.002) TCGA-90-A4ED-01 12 48597067 48597067 C T OR10AD1 Silent p.R3R 0.31 TCGA-90-A4ED-01 12 49177229 49177229 G A ADCY6 5'UTR 0.12 TCGA-90-A4ED-01 12 49432458 49432458 G A KMT2D Missense_Mutation p.P2894L 0.35 benign(0.016) TCGA-90-A4ED-01 12 49439872 49439872 G A KMT2D Nonsense_Mutation p.Q1557* 0.45 TCGA-90-A4ED-01 12 49445143 49445143 C A KMT2D Nonsense_Mutation p.E775* 0.22 TCGA-90-A4ED-01 12 49745300 49745300 C T DNAJC22 3'UTR 0.16 TCGA-90-A4ED-01 12 49952369 49952369 G A MCRS1 3'Flank 0.21 TCGA-90-A4ED-01 12 49958558 49958558 G A MCRS1 Missense_Mutation p.P150S 0.14 deleterious(0.01) benign(0.444) TCGA-90-A4ED-01 12 50062318 50062318 G A FMNL3 Missense_Mutation p.P49L 0.22 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 12 5020959 5020959 G A KCNA1 Missense_Mutation p.E139K 0.32 deleterious(0.02) benign(0.139) TCGA-90-A4ED-01 12 50499405 50499405 C T GPD1 Silent p.I98I 0.30 TCGA-90-A4ED-01 12 50642527 50642527 G A LIMA1 Missense_Mutation p.S3L 0.24 tolerated(0.08) benign(0.345) TCGA-90-A4ED-01 12 52282005 52282005 C T ANKRD33 Missense_Mutation p.S12F 0.13 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-90-A4ED-01 12 52450319 52450319 C T NR4A1 Missense_Mutation p.P363S 0.18 deleterious(0) probably_damaging(0.995) TCGA-90-A4ED-01 12 52450320 52450320 C T NR4A1 Missense_Mutation p.P363L 0.19 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 12 52867473 52867473 C T KRT6C Missense_Mutation p.G17S 0.31 tolerated(0.16) unknown(0) TCGA-90-A4ED-01 12 52942007 52942007 C T KRT71 Missense_Mutation p.E303K 0.18 deleterious(0.02) benign(0.258) TCGA-90-A4ED-01 12 53010006 53010006 C T KRT73 Silent p.V202V 0.26 TCGA-90-A4ED-01 12 53189599 53189599 C T KRT3 Silent p.R76R 0.12 TCGA-90-A4ED-01 12 54769662 54769662 G A ZNF385A Missense_Mutation p.S75F 0.05 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 12 54912456 54912456 G A NCKAP1L Missense_Mutation p.E454K 0.19 deleterious(0.04) probably_damaging(0.969) TCGA-90-A4ED-01 12 54914908 54914908 C T NCKAP1L Silent p.P588P 0.32 TCGA-90-A4ED-01 12 55356730 55356730 C T TESPA1 Missense_Mutation p.E318K 0.30 deleterious(0.04) benign(0.074) TCGA-90-A4ED-01 12 55688692 55688692 C G OR6C6 Missense_Mutation p.E109Q 0.52 deleterious_low_confidence(0.01) possibly_damaging(0.45) TCGA-90-A4ED-01 12 55714537 55714537 C T OR6C1 Missense_Mutation p.H52Y 0.32 deleterious_low_confidence(0.01) benign(0.031) TCGA-90-A4ED-01 12 55794901 55794901 G A OR6C65 Missense_Mutation p.A197T 0.37 tolerated_low_confidence(0.06) possibly_damaging(0.515) TCGA-90-A4ED-01 12 56075922 56075922 G A METTL7B Silent p.E128E 0.19 TCGA-90-A4ED-01 12 56623032 56623032 C T NABP2 3'UTR 0.26 TCGA-90-A4ED-01 12 56749540 56749540 G A STAT2 Silent p.L111L 0.29 TCGA-90-A4ED-01 12 56956305 56956305 C T RBMS2 Silent p.N57N 0.33 TCGA-90-A4ED-01 12 56992970 56992970 G A BAZ2A Missense_Mutation p.P1784L 0.11 tolerated(0.12) benign(0.017) TCGA-90-A4ED-01 12 57107396 57107396 G A NACA Silent p.I812I 0.33 TCGA-90-A4ED-01 12 57144860 57144860 G A PRIM1 Missense_Mutation p.P75S 0.28 deleterious(0) probably_damaging(0.986) TCGA-90-A4ED-01 12 57618987 57618987 C T NXPH4 Silent p.I128I 0.11 TCGA-90-A4ED-01 12 57619177 57619177 C T NXPH4 Missense_Mutation p.P192S 0.13 deleterious_low_confidence(0.01) probably_damaging(0.968) TCGA-90-A4ED-01 12 57849580 57849580 G A INHBE Silent p.G87G 0.33 TCGA-90-A4ED-01 12 58087910 58087910 G A OS9 5'UTR 0.35 TCGA-90-A4ED-01 12 59276707 59276707 G A LRIG3 Missense_Mutation p.P475L 0.28 deleterious(0) probably_damaging(0.978) TCGA-90-A4ED-01 12 6076763 6076763 C T VWF Silent p.G2592G 0.24 TCGA-90-A4ED-01 12 6422940 6422940 C T PLEKHG6 Missense_Mutation p.P95L 0.36 deleterious(0) possibly_damaging(0.878) TCGA-90-A4ED-01 12 6457082 6457082 G A SCNN1A Missense_Mutation p.S715F 0.28 tolerated_low_confidence(0.06) benign(0.003) TCGA-90-A4ED-01 12 64588416 64588416 G A C12orf66 Missense_Mutation p.P182S 0.31 tolerated(0.09) probably_damaging(0.959) TCGA-90-A4ED-01 12 65141672 65141672 G A GNS Silent p.P93P 0.12 TCGA-90-A4ED-01 12 67705474 67705474 T G CAND1 Missense_Mutation p.M1121R 0.30 deleterious(0) possibly_damaging(0.88) TCGA-90-A4ED-01 12 6804656 6804656 C T PIANP Missense_Mutation p.R256Q 0.23 deleterious_low_confidence(0.02) benign(0.417) TCGA-90-A4ED-01 12 69084480 69084480 C T NUP107 Missense_Mutation p.S86L 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.604) TCGA-90-A4ED-01 12 72366312 72366312 C T TPH2 Missense_Mutation p.P208S 0.21 deleterious(0) possibly_damaging(0.547) TCGA-90-A4ED-01 12 7276771 7276771 C T RBP5 Splice_Site p.X119_splice 0.31 TCGA-90-A4ED-01 12 73014923 73014923 C T TRHDE Silent p.I790I 0.19 TCGA-90-A4ED-01 12 75436150 75436150 G A KCNC2 3'UTR 0.22 TCGA-90-A4ED-01 12 75444462 75444462 C T KCNC2 Silent p.G441G 0.20 TCGA-90-A4ED-01 12 75874624 75874624 G A GLIPR1 5'UTR 0.52 TCGA-90-A4ED-01 12 7640497 7640497 C T CD163 Missense_Mutation p.G536E 0.28 deleterious(0.01) probably_damaging(1) TCGA-90-A4ED-01 12 76447045 76447045 G A NAP1L1 Missense_Mutation p.R286C 0.15 deleterious(0.05) benign(0.351) TCGA-90-A4ED-01 12 77449749 77449749 A G E2F7 Silent p.A85A 0.13 TCGA-90-A4ED-01 12 78400546 78400546 G A NAV3 Missense_Mutation p.G410S 0.16 tolerated_low_confidence(0.83) benign(0.001) TCGA-90-A4ED-01 12 7970545 7970545 G A SLC2A14 Missense_Mutation p.P409L 0.38 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 12 8075518 8075518 C T SLC2A3 Missense_Mutation p.E391K 0.21 deleterious(0.03) possibly_damaging(0.573) TCGA-90-A4ED-01 12 81657121 81657121 G A PPFIA2 Missense_Mutation p.P1202S 0.35 deleterious_low_confidence(0.01) benign(0.333) TCGA-90-A4ED-01 12 8671667 8671667 C T CLEC4D Missense_Mutation p.L99F 0.23 tolerated(0.26) benign(0.022) TCGA-90-A4ED-01 12 8813464 8813464 C T MFAP5 Missense_Mutation p.R30Q 0.30 deleterious(0.04) benign(0.293) TCGA-90-A4ED-01 12 88912584 88912584 G A KITLG Silent p.L85L 0.31 TCGA-90-A4ED-01 12 91347721 91347721 C T CCER1 Missense_Mutation p.E267K 0.32 deleterious(0.03) possibly_damaging(0.801) TCGA-90-A4ED-01 12 91347831 91347831 G A CCER1 Missense_Mutation p.S230F 0.28 tolerated(0.13) probably_damaging(0.919) TCGA-90-A4ED-01 12 96387909 96387909 C T HAL Missense_Mutation p.E124K 0.14 tolerated(0.12) benign(0.031) TCGA-90-A4ED-01 12 97078499 97078501 CGC TG C12orf55 Frame_Shift_Del p.A1931Efs*73 0.12 TCGA-90-A4ED-01 12 97157987 97157987 A G C12orf55 Missense_Mutation p.Y2700C 0.32 tolerated(0.1) benign(0.009) TCGA-90-A4ED-01 13 101747987 101747987 C T NALCN Silent p.K1069K 0.24 TCGA-90-A4ED-01 13 101833600 101833600 C T NALCN Intron 0.33 TCGA-90-A4ED-01 13 103510687 103510687 C T BIVM-ERCC5 Silent p.P623P 0.22 TCGA-90-A4ED-01 13 103515167 103515167 C T BIVM-ERCC5 Silent p.F982F 0.35 TCGA-90-A4ED-01 13 103515175 103515175 C T BIVM-ERCC5 Missense_Mutation p.S985F 0.33 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-90-A4ED-01 13 108861925 108861925 G A LIG4 Silent p.I564I 0.32 TCGA-90-A4ED-01 13 108863392 108863392 T A LIG4 Silent p.L75L 0.32 TCGA-90-A4ED-01 13 109438085 109438085 G A MYO16 Missense_Mutation p.E182K 0.38 deleterious(0) possibly_damaging(0.85) TCGA-90-A4ED-01 13 109793574 109793574 G A MYO16 Missense_Mutation p.A1650T 0.36 tolerated_low_confidence(0.12) benign(0.01) TCGA-90-A4ED-01 13 110807683 110807683 G A COL4A1 Missense_Mutation p.P1568S 0.19 unknown(0) TCGA-90-A4ED-01 13 110822989 110822989 C T COL4A1 Missense_Mutation p.G1216E 0.23 probably_damaging(1) TCGA-90-A4ED-01 13 112721939 112721939 C T SOX1 5'UTR 0.36 TCGA-90-A4ED-01 13 113333926 113333926 G A C13orf35 Missense_Mutation p.G78E 0.25 tolerated_low_confidence(0.17) probably_damaging(0.969) TCGA-90-A4ED-01 13 113459345 113459345 C T ATP11A Silent p.I79I 0.38 TCGA-90-A4ED-01 13 113532546 113532546 C T ATP11A Missense_Mutation p.L1115F 0.21 tolerated_low_confidence(0.15) benign(0.104) TCGA-90-A4ED-01 13 114773041 114773041 C T RASA3 Silent p.K570K 0.29 TCGA-90-A4ED-01 13 21620099 21620099 G A LATS2 Missense_Mutation p.R23C 0.26 deleterious(0) possibly_damaging(0.902) TCGA-90-A4ED-01 13 24823689 24823689 G T SPATA13 Missense_Mutation p.K576N 0.35 tolerated(0.09) benign(0.064) TCGA-90-A4ED-01 13 25049608 25049608 A T PARP4 Splice_Site p.X638_splice 0.29 TCGA-90-A4ED-01 13 25404639 25404639 G A RNF17 Missense_Mutation p.E755K 0.31 tolerated(0.09) probably_damaging(0.973) TCGA-90-A4ED-01 13 25671309 25671309 G A PABPC3 Missense_Mutation p.V325I 0.33 tolerated(0.11) possibly_damaging(0.874) TCGA-90-A4ED-01 13 28877223 28877223 T C FLT1 3'UTR 0.25 TCGA-90-A4ED-01 13 29005319 29005319 C T FLT1 Silent p.R314R 0.26 TCGA-90-A4ED-01 13 31711432 31711432 G A HSPH1 3'UTR 0.27 TCGA-90-A4ED-01 13 32978504 32978504 G T N4BP2L1 Silent p.R143R 0.18 TCGA-90-A4ED-01 13 32978505 32978505 G A N4BP2L1 Silent p.F142F 0.20 TCGA-90-A4ED-01 13 33703974 33703974 C T STARD13 Silent p.R280R 0.25 TCGA-90-A4ED-01 13 37453446 37453446 G C SMAD9 Missense_Mutation p.N127K 0.35 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 13 38266405 38266405 C T TRPC4 Missense_Mutation p.R322K 0.52 deleterious(0.03) probably_damaging(0.946) TCGA-90-A4ED-01 13 40268837 40268837 C T COG6 Missense_Mutation p.L381F 0.24 deleterious(0.01) probably_damaging(0.983) TCGA-90-A4ED-01 13 41134411 41134411 G A FOXO1 Missense_Mutation p.S406L 0.26 deleterious(0.03) benign(0.011) TCGA-90-A4ED-01 13 42748249 42748249 C T DGKH Missense_Mutation p.P474L 0.28 deleterious(0.04) benign(0.098) TCGA-90-A4ED-01 13 42830492 42830492 C T FHP1 RNA 0.25 TCGA-90-A4ED-01 13 46357538 46357538 G A SIAH3 Missense_Mutation p.P264S 0.24 tolerated_low_confidence(1) benign(0) TCGA-90-A4ED-01 13 49841932 49841932 C T CDADC1 Missense_Mutation p.S246L 0.25 tolerated(0.05) benign(0.083) TCGA-90-A4ED-01 13 51935970 51935970 G A SERPINE3 Missense_Mutation p.R371Q 0.34 tolerated(0.12) possibly_damaging(0.788) TCGA-90-A4ED-01 13 52972138 52972138 C T THSD1 Missense_Mutation p.G84R 0.37 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 13 58209155 58209155 C T PCDH17 Silent p.V825V 0.27 TCGA-90-A4ED-01 13 70281833 70281833 G A KLHL1 Missense_Mutation p.A704V 0.31 tolerated(0.23) possibly_damaging(0.576) TCGA-90-A4ED-01 13 70293681 70293681 G A KLHL1 Missense_Mutation p.S612F 0.27 deleterious(0.02) possibly_damaging(0.873) TCGA-90-A4ED-01 13 73350187 73350187 G A DIS3 Missense_Mutation p.P233L 0.36 deleterious(0.02) benign(0.13) TCGA-90-A4ED-01 13 73649949 73649949 C T KLF5 Silent p.F433F 0.27 TCGA-90-A4ED-01 13 75936378 75936378 G A TBC1D4 Silent p.A288A 0.28 TCGA-90-A4ED-01 13 84454602 84454602 G C SLITRK1 Missense_Mutation p.C347W 0.23 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 13 88328422 88328422 G A SLITRK5 Missense_Mutation p.G260E 0.24 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 13 92345575 92345575 G A GPC5 Missense_Mutation p.G154S 0.34 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 13 97485129 97485129 G A HS6ST3 Missense_Mutation p.E365K 0.30 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 14 100341310 100341310 T C EML1 Silent p.N142N 0.13 TCGA-90-A4ED-01 14 100576045 100576045 G A EVL Intron 0.30 TCGA-90-A4ED-01 14 101442876 101442876 C T SNORD114-19 RNA 0.14 TCGA-90-A4ED-01 14 102606244 102606244 G A WDR20 5'Flank 0.17 TCGA-90-A4ED-01 14 104174866 104174866 G A XRCC3 Silent p.I62I 0.19 TCGA-90-A4ED-01 14 104618561 104618561 C T KIF26A Silent p.T166T 0.27 TCGA-90-A4ED-01 14 105174861 105174861 C T INF2 Silent p.F608F 0.22 TCGA-90-A4ED-01 14 105411707 105411707 G A AHNAK2 Missense_Mutation p.P3361S 0.16 probably_damaging(0.996) TCGA-90-A4ED-01 14 105418350 105418350 C T AHNAK2 Silent p.E1146E 0.32 TCGA-90-A4ED-01 14 105834848 105834848 C T PACS2 Missense_Mutation p.S238L 0.23 tolerated(0.2) benign(0.284) TCGA-90-A4ED-01 14 106236859 106236859 G A IGHG3 Missense_Mutation p.P117L 0.24 deleterious(0.01) benign(0.028) TCGA-90-A4ED-01 14 106237552 106237552 G A IGHG3 Silent p.S64S 0.25 TCGA-90-A4ED-01 14 107035135 107035135 G A IGHV5-51 Missense_Mutation p.L10F 0.17 deleterious(0.05) possibly_damaging(0.628) TCGA-90-A4ED-01 14 107048753 107048753 G A IGHV3-53 Silent p.S89S 0.13 TCGA-90-A4ED-01 14 19553567 19553567 G A POTEG Missense_Mutation p.D51N 0.07 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-90-A4ED-01 14 19573100 19573100 G A POTEG Missense_Mutation p.E400K 0.06 tolerated(1) benign(0) TCGA-90-A4ED-01 14 20248844 20248844 C T OR4M1 Silent p.D121D 0.24 TCGA-90-A4ED-01 14 20249265 20249265 C T OR4M1 Missense_Mutation p.R262C 0.30 deleterious(0.02) benign(0.066) TCGA-90-A4ED-01 14 20443812 20443812 G A OR4K15 Silent p.R45R 0.34 TCGA-90-A4ED-01 14 20528262 20528262 G A OR4L1 Missense_Mutation p.R20Q 0.13 deleterious(0.03) benign(0) TCGA-90-A4ED-01 14 20612689 20612689 C T OR4N5 Silent p.F265F 0.30 TCGA-90-A4ED-01 14 20691985 20691985 G A OR11H6 Silent p.R39R 0.34 TCGA-90-A4ED-01 14 21250270 21250270 C T RNASE6 Missense_Mutation p.P138S 0.33 tolerated(0.19) possibly_damaging(0.562) TCGA-90-A4ED-01 14 21469512 21469512 C T SLC39A2 Missense_Mutation p.S235F 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-90-A4ED-01 14 21957548 21957548 G A TOX4 Missense_Mutation p.E266K 0.28 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 14 22294005 22294005 G A TRAV10 Missense_Mutation p.G37R 0.16 deleterious(0) probably_damaging(0.983) TCGA-90-A4ED-01 14 22392573 22392573 C T TRAV14DV4 Silent p.F32F 0.24 TCGA-90-A4ED-01 14 22434019 22434019 G A TRAV12-3 Silent p.K24K 0.11 TCGA-90-A4ED-01 14 22636681 22636681 C T TRAV30 Missense_Mutation p.S45F 0.32 benign(0.072) TCGA-90-A4ED-01 14 22671223 22671223 C T TRAV26-2 Silent p.T96T 0.18 TCGA-90-A4ED-01 14 22919112 22919112 C T TRDJ1 Silent p.T11T 0.23 TCGA-90-A4ED-01 14 23314992 23314992 C T MMP14 Missense_Mutation p.P498L 0.33 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 14 23314993 23314993 C T MMP14 Silent p.P498P 0.30 TCGA-90-A4ED-01 14 23511906 23511906 C T PSMB11 Missense_Mutation p.P158S 0.10 deleterious(0.01) probably_damaging(0.977) TCGA-90-A4ED-01 14 23847599 23847599 C T CMTM5 Silent p.I56I 0.20 TCGA-90-A4ED-01 14 23862883 23862883 C T MYH6 Missense_Mutation p.E974K 0.43 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 14 23865967 23865967 C T MYH6 Missense_Mutation p.G743E 0.39 deleterious(0) probably_damaging(0.939) TCGA-90-A4ED-01 14 24590571 24590571 C T RP11-468E2.6 Missense_Mutation p.P5L 0.28 deleterious_low_confidence(0.01) benign(0.03) TCGA-90-A4ED-01 14 24626825 24626825 A G RNF31 Missense_Mutation p.Y902C 0.16 tolerated(0.16) probably_damaging(0.981) TCGA-90-A4ED-01 14 26949268 26949268 C T NOVA1 Missense_Mutation p.R121Q 0.15 deleterious(0.01) unknown(0) TCGA-90-A4ED-01 14 28734263 28734263 C T BNIP3P1 RNA 0.24 TCGA-90-A4ED-01 14 32902726 32902726 C T AKAP6 Silent p.S9S 0.18 TCGA-90-A4ED-01 14 33016081 33016081 C T AKAP6 Missense_Mutation p.S741L 0.31 tolerated(0.29) benign(0.005) TCGA-90-A4ED-01 14 34247735 34247735 C T NPAS3 Silent p.I370I 0.35 TCGA-90-A4ED-01 14 35032290 35032290 G A SNX6 3'UTR 0.35 TCGA-90-A4ED-01 14 39583633 39583633 C T GEMIN2 Missense_Mutation p.P42S 0.23 tolerated(0.05) possibly_damaging(0.779) TCGA-90-A4ED-01 14 39583634 39583634 C T GEMIN2 Missense_Mutation p.P42L 0.21 tolerated(1) benign(0.336) TCGA-90-A4ED-01 14 47120507 47120507 C T RPL10L Missense_Mutation p.E145K 0.24 tolerated(1) benign(0) TCGA-90-A4ED-01 14 50266200 50266200 C T NEMF Missense_Mutation p.E820K 0.22 tolerated(0.41) benign(0.056) TCGA-90-A4ED-01 14 50266201 50266201 C T NEMF Silent p.K819K 0.22 TCGA-90-A4ED-01 14 51446170 51446170 G A TRIM9 Missense_Mutation p.P669S 0.15 tolerated(0.08) possibly_damaging(0.714) TCGA-90-A4ED-01 14 52472159 52472159 C T NID2 3'UTR 0.22 TCGA-90-A4ED-01 14 52741549 52741549 C T PTGDR Missense_Mutation p.S316L 0.31 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 14 55310742 55310742 C T GCH1 Missense_Mutation p.R249K 0.31 tolerated(0.44) benign(0) TCGA-90-A4ED-01 14 55468878 55468878 G A WDHD1 Missense_Mutation p.S209F 0.15 deleterious(0.03) possibly_damaging(0.82) TCGA-90-A4ED-01 14 58909466 58909466 G T KIAA0586 Silent p.L204L 0.46 TCGA-90-A4ED-01 14 58955431 58955431 C T KIAA0586 Missense_Mutation p.P1260L 0.41 deleterious(0.03) benign(0.066) TCGA-90-A4ED-01 14 59798054 59798054 C T DAAM1 Missense_Mutation p.P563L 0.27 tolerated(0.24) unknown(0) TCGA-90-A4ED-01 14 64727254 64727254 A G ESR2 Missense_Mutation p.F289L 0.25 tolerated(0.31) benign(0.115) TCGA-90-A4ED-01 14 64727455 64727455 C T ESR2 Missense_Mutation p.E222K 0.15 deleterious(0.02) possibly_damaging(0.844) TCGA-90-A4ED-01 14 64954147 64954147 C T ZBTB25 Missense_Mutation p.G268S 0.33 tolerated(0.26) probably_damaging(0.999) TCGA-90-A4ED-01 14 64954657 64954657 C T ZBTB25 Missense_Mutation p.G98R 0.16 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 14 65031494 65031494 G A PPP1R36 Missense_Mutation p.E70K 0.31 tolerated(0.07) probably_damaging(0.999) TCGA-90-A4ED-01 14 67862211 67862211 G A PLEK2 Silent p.I99I 0.25 TCGA-90-A4ED-01 14 68047685 68047685 G A PLEKHH1 Missense_Mutation p.A1072T 0.22 deleterious(0.01) benign(0.008) TCGA-90-A4ED-01 14 69521520 69521520 G A DCAF5 Missense_Mutation p.S628F 0.21 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-90-A4ED-01 14 70490020 70490020 G A SMOC1 Missense_Mutation p.E383K 0.41 deleterious(0) probably_damaging(0.997) TCGA-90-A4ED-01 14 70496960 70496960 A T SMOC1 Silent p.V431V 0.47 TCGA-90-A4ED-01 14 71199451 71199451 G A MAP3K9 Missense_Mutation p.P893S 0.31 tolerated(0.07) probably_damaging(0.999) TCGA-90-A4ED-01 14 74539255 74539255 G A ALDH6A1 Silent p.I57I 0.27 TCGA-90-A4ED-01 14 74874558 74874558 G A SYNDIG1L Silent p.S184S 0.42 TCGA-90-A4ED-01 14 75283727 75283727 C T YLPM1 Missense_Mutation p.P1927S 0.18 benign(0.42) TCGA-90-A4ED-01 14 75746684 75746684 C T FOS Silent p.V82V 0.17 TCGA-90-A4ED-01 14 75746721 75746721 C T FOS Missense_Mutation p.P95S 0.18 tolerated(0.23) benign(0.012) TCGA-90-A4ED-01 14 76431979 76431979 C T TGFB3 Missense_Mutation p.G236R 0.15 deleterious(0.01) probably_damaging(1) TCGA-90-A4ED-01 14 77327049 77327049 C T C14orf166B Missense_Mutation p.S373F 0.08 deleterious(0) possibly_damaging(0.707) TCGA-90-A4ED-01 14 77491811 77491811 G A IRF2BPL Silent p.F775F 0.23 TCGA-90-A4ED-01 14 80130249 80130249 C T NRXN3 Silent p.T818T 0.10 TCGA-90-A4ED-01 14 81993144 81993144 G A SEL1L Silent p.I91I 0.34 TCGA-90-A4ED-01 14 90650555 90650555 C T KCNK13 Silent p.F145F 0.32 TCGA-90-A4ED-01 14 93118549 93118549 C T RIN3 Silent p.A385A 0.21 TCGA-90-A4ED-01 14 93460236 93460236 G A ITPK1 Missense_Mutation p.A118V 0.29 tolerated(0.27) benign(0.014) TCGA-90-A4ED-01 14 94009031 94009031 G A UNC79 Missense_Mutation p.E405K 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-90-A4ED-01 14 94964434 94964434 C T SERPINA12 Missense_Mutation p.G101R 0.39 deleterious(0) probably_damaging(0.98) TCGA-90-A4ED-01 14 95670166 95670166 G A CLMN Missense_Mutation p.S507F 0.19 tolerated_low_confidence(0.15) benign(0.004) TCGA-90-A4ED-01 14 96157085 96157085 A C TCL1B Missense_Mutation p.I59L 0.33 tolerated(0.45) benign(0.405) TCGA-90-A4ED-01 14 96178601 96178601 G A TCL1A Nonsense_Mutation p.R85* 0.17 TCGA-90-A4ED-01 14 96178602 96178602 G A TCL1A Silent p.Y84Y 0.16 TCGA-90-A4ED-01 14 99967733 99967733 G A CCNK Nonsense_Mutation p.W186* 0.09 TCGA-90-A4ED-01 15 100649232 100649232 G A ADAMTS17 Missense_Mutation p.P660S 0.38 tolerated(0.14) possibly_damaging(0.606) TCGA-90-A4ED-01 15 101098891 101098891 C T RNU6-181P 3'Flank 0.33 TCGA-90-A4ED-01 15 101169639 101169639 C T ASB7 Intron 0.24 TCGA-90-A4ED-01 15 101589873 101589873 G A LRRK1 Nonsense_Mutation p.W1108* 0.25 TCGA-90-A4ED-01 15 20193344 20193344 G A IGHV3OR15-7 Silent p.F9F 0.20 TCGA-90-A4ED-01 15 20496636 20496636 G A CHEK2P2 RNA 0.14 TCGA-90-A4ED-01 15 20588544 20588544 C T HERC2P3 RNA 0.11 TCGA-90-A4ED-01 15 23889374 23889374 G A MAGEL2 Silent p.I569I 0.17 TCGA-90-A4ED-01 15 24921112 24921112 C T NPAP1 Missense_Mutation p.S33F 0.31 tolerated(0.09) possibly_damaging(0.683) TCGA-90-A4ED-01 15 25322283 25322283 G A SNORD116-12 RNA 0.18 TCGA-90-A4ED-01 15 25334972 25334972 G A SNORD116-23 5'Flank 0.29 TCGA-90-A4ED-01 15 25430673 25430673 C T SNORD115-10 5'Flank 0.40 TCGA-90-A4ED-01 15 25448278 25448278 C T SNORD115-20 5'Flank 0.37 TCGA-90-A4ED-01 15 25458694 25458694 G A SNORD115-22 3'Flank 0.33 TCGA-90-A4ED-01 15 28377246 28377246 C T HERC2 Silent p.K4190K 0.30 TCGA-90-A4ED-01 15 30025405 30025405 G A TJP1 Silent p.F543F 0.30 TCGA-90-A4ED-01 15 31295001 31295001 C T TRPM1 Missense_Mutation p.G1318E 0.37 tolerated(0.36) possibly_damaging(0.694) TCGA-90-A4ED-01 15 31318392 31318392 C T TRPM1 Silent p.E1210E 0.29 TCGA-90-A4ED-01 15 31319279 31319279 C T TRPM1 Nonsense_Mutation p.W1129* 0.16 TCGA-90-A4ED-01 15 31355458 31355458 C T TRPM1 Silent p.V293V 0.21 TCGA-90-A4ED-01 15 33905434 33905434 G A RYR3 Missense_Mutation p.D739N 0.40 benign(0.04) TCGA-90-A4ED-01 15 33955866 33955866 G A RYR3 Missense_Mutation p.M1849I 0.25 probably_damaging(0.909) TCGA-90-A4ED-01 15 34635360 34635360 C T NOP10 5'UTR 0.28 TCGA-90-A4ED-01 15 34635361 34635361 C T NOP10 5'UTR 0.28 TCGA-90-A4ED-01 15 35044941 35044941 G A GJD2 Missense_Mutation p.P235L 0.20 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 15 35044942 35044942 G A GJD2 Missense_Mutation p.P235S 0.20 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 15 35530103 35530103 G A ANP32AP1 RNA 0.50 TCGA-90-A4ED-01 15 37184583 37184583 G A MEIS2 Missense_Mutation p.P409S 0.23 tolerated_low_confidence(0.25) benign(0.001) TCGA-90-A4ED-01 15 38229130 38229130 G A TMCO5A Missense_Mutation p.E75K 0.23 deleterious(0) benign(0.226) TCGA-90-A4ED-01 15 38243451 38243451 C T TMCO5A 3'UTR 0.17 TCGA-90-A4ED-01 15 39910031 39910031 G A FSIP1 Missense_Mutation p.P535L 0.32 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 15 40265194 40265194 C T EIF2AK4 Silent p.L547L 0.14 TCGA-90-A4ED-01 15 40512888 40512888 C T BUB1B Silent p.F1027F 0.35 TCGA-90-A4ED-01 15 41059542 41059542 G A GCHFR Missense_Mutation p.E84K 0.14 deleterious(0.02) possibly_damaging(0.861) TCGA-90-A4ED-01 15 41663874 41663874 C T NUSAP1 Missense_Mutation p.S333F 0.17 deleterious(0) benign(0.222) TCGA-90-A4ED-01 15 42182299 42182299 G A SPTBN5 Silent p.I163I 0.22 TCGA-90-A4ED-01 15 42439431 42439431 T A PLA2G4F Missense_Mutation p.E437V 0.34 deleterious(0) possibly_damaging(0.717) TCGA-90-A4ED-01 15 42458796 42458796 C T VPS39 Missense_Mutation p.G524D 0.15 deleterious(0.02) probably_damaging(0.929) TCGA-90-A4ED-01 15 42853535 42853535 C T HAUS2 Silent p.S108S 0.34 TCGA-90-A4ED-01 15 43767830 43767830 G A TP53BP1 Missense_Mutation p.P340S 0.27 deleterious(0) probably_damaging(0.991) TCGA-90-A4ED-01 15 43817099 43817099 G A MAP1A Missense_Mutation p.R1143Q 0.20 benign(0.004) TCGA-90-A4ED-01 15 44086045 44086045 C T SERF2 Missense_Mutation p.P130S 0.23 tolerated_low_confidence(0.54) benign(0) TCGA-90-A4ED-01 15 48056168 48056168 C T SEMA6D Missense_Mutation p.S290L 0.28 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 15 48414255 48414255 C T SLC24A5 Intron 0.22 TCGA-90-A4ED-01 15 48426696 48426696 C T SLC24A5 Silent p.L150L 0.27 TCGA-90-A4ED-01 15 48426697 48426697 C T SLC24A5 Missense_Mutation p.L151F 0.27 tolerated(0.06) possibly_damaging(0.699) TCGA-90-A4ED-01 15 48434588 48434588 G A MYEF2 3'UTR 0.46 TCGA-90-A4ED-01 15 48704803 48704803 C T FBN1 Missense_Mutation p.R2730Q 0.30 possibly_damaging(0.767) TCGA-90-A4ED-01 15 48760228 48760228 C T FBN1 Missense_Mutation p.E1552K 0.36 possibly_damaging(0.805) TCGA-90-A4ED-01 15 49118308 49118308 G A SHC4 Missense_Mutation p.H585Y 0.22 deleterious(0.03) possibly_damaging(0.737) TCGA-90-A4ED-01 15 50906451 50906451 G A TRPM7 Missense_Mutation p.P502S 0.16 tolerated(0.1) possibly_damaging(0.616) TCGA-90-A4ED-01 15 51397308 51397308 C T TNFAIP8L3 Silent p.G22G 0.22 TCGA-90-A4ED-01 15 52005599 52005599 G A SCG3 Missense_Mutation p.G426E 0.31 tolerated_low_confidence(0.49) benign(0.05) TCGA-90-A4ED-01 15 53081565 53081565 C A ONECUT1 Missense_Mutation p.A173S 0.25 tolerated(0.89) benign(0.001) TCGA-90-A4ED-01 15 54307147 54307147 C T UNC13C Missense_Mutation p.L683F 0.30 tolerated_low_confidence(0.07) possibly_damaging(0.548) TCGA-90-A4ED-01 15 55931974 55931974 C T PRTG Silent p.A730A 0.37 TCGA-90-A4ED-01 15 55974643 55974643 C T PRTG Missense_Mutation p.D199N 0.39 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 15 55976108 55976108 T C PRTG Missense_Mutation p.Q140R 0.27 deleterious(0) possibly_damaging(0.61) TCGA-90-A4ED-01 15 57490007 57490007 C T TCF12 Missense_Mutation p.P188L 0.17 deleterious(0) possibly_damaging(0.563) TCGA-90-A4ED-01 15 58860978 58860978 C T LIPC Silent p.F484F 0.18 TCGA-90-A4ED-01 15 59359017 59359017 T G RNF111 Missense_Mutation p.M474R 0.21 deleterious_low_confidence(0) benign(0.293) TCGA-90-A4ED-01 15 59499196 59499196 G A LDHAL6B Silent p.A19A 0.17 TCGA-90-A4ED-01 15 62211616 62211616 G A VPS13C Missense_Mutation p.P2504S 0.30 tolerated(0.05) possibly_damaging(0.53) TCGA-90-A4ED-01 15 62211617 62211617 G A VPS13C Silent p.I2503I 0.30 TCGA-90-A4ED-01 15 64388209 64388209 G A SNX1 5'UTR 0.38 TCGA-90-A4ED-01 15 64418336 64418336 T C SNX1 Missense_Mutation p.F190S 0.34 deleterious(0) probably_damaging(0.968) TCGA-90-A4ED-01 15 65347114 65347114 C T RASL12 3'UTR 0.30 TCGA-90-A4ED-01 15 65350912 65350912 G A RASL12 Missense_Mutation p.A93V 0.23 tolerated(0.17) benign(0.283) TCGA-90-A4ED-01 15 65490910 65490910 G A CILP Missense_Mutation p.R572C 0.26 deleterious(0) probably_damaging(0.997) TCGA-90-A4ED-01 15 67073715 67073715 G A SMAD6 Missense_Mutation p.G445S 0.18 tolerated(1) benign(0.004) TCGA-90-A4ED-01 15 68438231 68438231 C T PIAS1 Missense_Mutation p.P227L 0.35 tolerated(1) benign(0.193) TCGA-90-A4ED-01 15 68695271 68695271 G A ITGA11 Silent p.I50I 0.29 TCGA-90-A4ED-01 15 71535034 71535034 A T THSD4 Nonsense_Mutation p.K171* 0.21 TCGA-90-A4ED-01 15 72502709 72502709 G A PKM Silent p.I119I 0.31 TCGA-90-A4ED-01 15 72968577 72968577 G A HIGD2B Missense_Mutation p.P47S 0.24 deleterious(0) probably_damaging(0.923) TCGA-90-A4ED-01 15 72968599 72968599 G A HIGD2B Silent p.F39F 0.38 TCGA-90-A4ED-01 15 74883670 74883670 C T ARID3B Missense_Mutation p.L354F 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-90-A4ED-01 15 75014901 75014901 C T CYP1A1 Missense_Mutation p.G180R 0.27 tolerated(0.24) benign(0.022) TCGA-90-A4ED-01 15 75015340 75015340 G A CYP1A1 Silent p.V33V 0.18 TCGA-90-A4ED-01 15 75981584 75981584 G A CSPG4 Nonsense_Mutation p.Q608* 0.23 TCGA-90-A4ED-01 15 75981602 75981602 G A CSPG4 Missense_Mutation p.P602S 0.29 tolerated(0.34) benign(0.184) TCGA-90-A4ED-01 15 76496173 76496173 G A C15orf27 Silent p.L371L 0.32 TCGA-90-A4ED-01 15 76496174 76496174 G A C15orf27 Missense_Mutation p.D372N 0.32 deleterious_low_confidence(0.05) possibly_damaging(0.629) TCGA-90-A4ED-01 15 76496551 76496551 G A C15orf27 Silent p.Q497Q 0.33 TCGA-90-A4ED-01 15 77759585 77759585 C T HMG20A Missense_Mutation p.P129L 0.33 deleterious(0) possibly_damaging(0.823) TCGA-90-A4ED-01 15 79282616 79282616 C T RASGRF1 Splice_Site p.X1060_splice 0.33 TCGA-90-A4ED-01 15 79341876 79341876 G A RASGRF1 Missense_Mutation p.P196S 0.24 tolerated(0.14) benign(0.007) TCGA-90-A4ED-01 15 80472543 80472543 G A FAH Silent p.L346L 0.31 TCGA-90-A4ED-01 15 82450185 82450185 G A EFTUD1 Silent p.L633L 0.33 TCGA-90-A4ED-01 15 83224795 83224795 C T CPEB1 Silent p.G228G 0.22 TCGA-90-A4ED-01 15 83455938 83455938 C T FSD2 Missense_Mutation p.E69K 0.25 tolerated(0.61) benign(0.004) TCGA-90-A4ED-01 15 83456004 83456004 C T FSD2 Missense_Mutation p.V47I 0.24 tolerated(0.22) benign(0.001) TCGA-90-A4ED-01 15 85406140 85406140 C T ALPK3 Silent p.T1670T 0.25 TCGA-90-A4ED-01 15 85487809 85487809 C T SLC28A1 Missense_Mutation p.P559L 0.24 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 15 85487810 85487810 C T SLC28A1 Silent p.P559P 0.22 TCGA-90-A4ED-01 15 85660991 85660991 C T PDE8A Missense_Mutation p.S552F 0.31 deleterious(0) possibly_damaging(0.557) TCGA-90-A4ED-01 15 85669549 85669549 C T PDE8A Missense_Mutation p.P733S 0.26 deleterious(0.04) benign(0.195) TCGA-90-A4ED-01 15 86807691 86807691 C T AGBL1 Missense_Mutation p.S384F 0.28 deleterious(0.05) benign(0.01) TCGA-90-A4ED-01 15 88678492 88678492 G A NTRK3 Silent p.I348I 0.32 TCGA-90-A4ED-01 15 88678573 88678573 G A NTRK3 Silent p.I321I 0.25 TCGA-90-A4ED-01 15 90321355 90321355 C T MESP2 Silent p.H328H 0.22 TCGA-90-A4ED-01 15 90892028 90892028 C - GABARAPL3 3'UTR 0.17 TCGA-90-A4ED-01 15 91312683 91312683 C T BLM Missense_Mutation p.R808C 0.34 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 16 11001296 11001296 C T CIITA Silent p.A649A 0.20 TCGA-90-A4ED-01 16 12618696 12618696 C T SNX29 Silent p.F772F 0.17 TCGA-90-A4ED-01 16 1270512 1270512 G A CACNA1H Missense_Mutation p.V2194M 0.27 deleterious(0.01) possibly_damaging(0.653) TCGA-90-A4ED-01 16 15103549 15103549 C T PDXDC1 Silent p.F220F 0.25 TCGA-90-A4ED-01 16 15813559 15813559 C T MYH11 Silent p.K1662K 0.37 TCGA-90-A4ED-01 16 16184306 16184306 G A ABCC1 Silent p.V835V 0.24 TCGA-90-A4ED-01 16 16232224 16232224 C T ABCC1 Silent p.V1432V 0.17 TCGA-90-A4ED-01 16 19063077 19063077 C T TMC7 Silent p.L604L 0.22 TCGA-90-A4ED-01 16 19191859 19191859 C T SYT17 Missense_Mutation p.S110L 0.17 tolerated_low_confidence(0.07) benign(0.001) TCGA-90-A4ED-01 16 19659117 19659117 C T C16orf62 Silent p.G736G 0.15 TCGA-90-A4ED-01 16 19725819 19725819 A G KNOP1 Missense_Mutation p.V180A 0.23 tolerated_low_confidence(1) benign(0) TCGA-90-A4ED-01 16 20648119 20648119 C T ACSM1 Missense_Mutation p.G414E 0.35 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 16 20873485 20873485 G A DCUN1D3 Nonsense_Mutation p.R126* 0.38 TCGA-90-A4ED-01 16 20976508 20976508 C T DNAH3 Missense_Mutation p.V2900M 0.17 deleterious(0.02) probably_damaging(0.983) TCGA-90-A4ED-01 16 21270066 21270066 C T CRYM 3'UTR 0.16 TCGA-90-A4ED-01 16 22558324 22558324 G A RP11-368J21.3 RNA 0.15 TCGA-90-A4ED-01 16 2334368 2334368 C T ABCA3 Silent p.G1258G 0.16 TCGA-90-A4ED-01 16 23391814 23391814 G A SCNN1B Missense_Mutation p.E539K 0.38 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 16 23722298 23722298 G A ERN2 Silent p.T93T 0.29 TCGA-90-A4ED-01 16 23722299 23722299 G A ERN2 Missense_Mutation p.T93I 0.30 deleterious(0) possibly_damaging(0.871) TCGA-90-A4ED-01 16 24268017 24268017 C T CACNG3 5'UTR 0.24 TCGA-90-A4ED-01 16 2481166 2481166 C T CCNF Missense_Mutation p.P18S 0.46 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 16 2569658 2569658 T C ATP6V0C Missense_Mutation p.L127P 0.27 deleterious(0) probably_damaging(0.996) TCGA-90-A4ED-01 16 27481657 27481657 C T GTF3C1 Missense_Mutation p.R1529K 0.42 tolerated(1) benign(0.001) TCGA-90-A4ED-01 16 27556709 27556709 C T GTF3C1 Silent p.E119E 0.19 TCGA-90-A4ED-01 16 2813470 2813470 C T SRRM2 Missense_Mutation p.P981S 0.34 unknown(0) TCGA-90-A4ED-01 16 28596976 28596976 C T CCDC101 Silent p.P53P 0.45 TCGA-90-A4ED-01 16 28877595 28877595 C T SH2B1 Silent p.A60A 0.25 TCGA-90-A4ED-01 16 28943348 28943348 C T CD19 Silent p.F9F 0.39 TCGA-90-A4ED-01 16 28997530 28997530 C T LAT Missense_Mutation p.P116S 0.26 tolerated_low_confidence(0.08) possibly_damaging(0.723) TCGA-90-A4ED-01 16 29105570 29105570 C T RRN3P2 RNA 0.31 TCGA-90-A4ED-01 16 29851519 29851519 C T MVP Silent p.L310L 0.28 TCGA-90-A4ED-01 16 29891262 29891262 G A SEZ6L2 Missense_Mutation p.P499L 0.38 deleterious(0) benign(0.216) TCGA-90-A4ED-01 16 30021420 30021420 G A DOC2A Missense_Mutation p.P42S 0.39 tolerated(0.5) benign(0.002) TCGA-90-A4ED-01 16 30364952 30364952 C T CD2BP2 Missense_Mutation p.G182E 0.21 deleterious(0.04) possibly_damaging(0.449) TCGA-90-A4ED-01 16 30364953 30364953 C T CD2BP2 Missense_Mutation p.G182R 0.21 tolerated(0.18) benign(0.093) TCGA-90-A4ED-01 16 30486672 30486672 C T ITGAL Silent p.L70L 0.19 TCGA-90-A4ED-01 16 3063706 3063706 G A CLDN9 Missense_Mutation p.A115T 0.33 tolerated(0.07) possibly_damaging(0.622) TCGA-90-A4ED-01 16 31090138 31090138 C T ZNF646 Silent p.P831P 0.26 TCGA-90-A4ED-01 16 31419770 31419770 C T ITGAD Missense_Mutation p.S345F 0.30 deleterious(0.01) benign(0.058) TCGA-90-A4ED-01 16 3306588 3306588 G A MEFV 5'UTR 0.43 TCGA-90-A4ED-01 16 3406175 3406175 C T OR2C1 Missense_Mutation p.P79S 0.41 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 16 3554779 3554779 C T CLUAP1 Missense_Mutation p.R28C 0.13 deleterious(0) probably_damaging(0.988) TCGA-90-A4ED-01 16 4496940 4496940 C T DNAJA3 Silent p.L350L 0.43 TCGA-90-A4ED-01 16 46741630 46741630 G A MYLK3 Missense_Mutation p.P816S 0.47 deleterious(0.02) possibly_damaging(0.839) TCGA-90-A4ED-01 16 4700463 4700463 C T MGRN1 Silent p.F62F 0.47 TCGA-90-A4ED-01 16 4733844 4733844 G A MGRN1 Missense_Mutation p.G510E 0.32 tolerated_low_confidence(0.24) benign(0.011) TCGA-90-A4ED-01 16 4833556 4833556 G A SEPT12 Silent p.I211I 0.42 TCGA-90-A4ED-01 16 50342595 50342595 G A ADCY7 Silent p.R651R 0.41 TCGA-90-A4ED-01 16 50362628 50362628 C T BRD7 Missense_Mutation p.G347R 0.42 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 16 5094243 5094243 C T C16orf89 3'UTR 0.31 TCGA-90-A4ED-01 16 51172846 51172846 G A SALL1 Missense_Mutation p.S1096F 0.44 deleterious(0.03) benign(0.078) TCGA-90-A4ED-01 16 51174665 51174665 C T SALL1 Missense_Mutation p.G490R 0.42 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 16 53468506 53468506 C T RBL2 Missense_Mutation p.P13L 0.30 tolerated_low_confidence(0.17) unknown(0) TCGA-90-A4ED-01 16 56466510 56466510 G A NUDT21 3'UTR 0.50 TCGA-90-A4ED-01 16 57507323 57507323 C T DOK4 Missense_Mutation p.G316E 0.37 tolerated_low_confidence(0.44) benign(0) TCGA-90-A4ED-01 16 57507324 57507324 C T DOK4 Missense_Mutation p.G316R 0.37 tolerated_low_confidence(0.11) benign(0.023) TCGA-90-A4ED-01 16 57937784 57937784 G A CNGB1 Silent p.S912S 0.23 TCGA-90-A4ED-01 16 65025774 65025774 G A CDH11 Silent p.I236I 0.53 TCGA-90-A4ED-01 16 66974531 66974531 C T CES2 Missense_Mutation p.A314V 0.43 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 16 66974532 66974532 C T CES2 Silent p.A314A 0.43 TCGA-90-A4ED-01 16 67322213 67322213 C T PLEKHG4 Missense_Mutation p.L1122F 0.45 tolerated(0.1) possibly_damaging(0.646) TCGA-90-A4ED-01 16 67694198 67694198 G A ACD Missense_Mutation p.L62F 0.49 tolerated_low_confidence(0.2) possibly_damaging(0.86) TCGA-90-A4ED-01 16 67709265 67709265 G A GFOD2 Silent p.S317S 0.56 TCGA-90-A4ED-01 16 67709266 67709266 G A GFOD2 Missense_Mutation p.S317F 0.56 deleterious(0) possibly_damaging(0.555) TCGA-90-A4ED-01 16 67863861 67863861 T A CENPT Missense_Mutation p.E331D 0.57 tolerated(0.59) benign(0.003) TCGA-90-A4ED-01 16 68026532 68026532 C T DPEP2 Missense_Mutation p.D91N 0.53 deleterious(0.03) possibly_damaging(0.633) TCGA-90-A4ED-01 16 68344376 68344376 G A SLC7A6OS Silent p.S111S 0.24 TCGA-90-A4ED-01 16 68729703 68729703 C T CDH3 Silent p.H719H 0.47 TCGA-90-A4ED-01 16 69368878 69368878 A G COG8 Missense_Mutation p.L320P 0.54 tolerated(0.09) possibly_damaging(0.808) TCGA-90-A4ED-01 16 70180054 70180054 C T PDPR Missense_Mutation p.P629S 0.40 deleterious(0.01) probably_damaging(1) TCGA-90-A4ED-01 16 70180055 70180055 C T PDPR Missense_Mutation p.P629L 0.39 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 16 70897066 70897066 C T HYDIN Missense_Mutation p.G3831R 0.57 probably_damaging(0.991) TCGA-90-A4ED-01 16 71098630 71098630 C T HYDIN Missense_Mutation p.G730E 0.52 probably_damaging(0.964) TCGA-90-A4ED-01 16 71606514 71606514 G A TAT Silent p.I162I 0.51 TCGA-90-A4ED-01 16 74394547 74394547 G A RP11-252A24.2 RNA 0.23 TCGA-90-A4ED-01 16 74716635 74716635 G A MLKL Silent p.T290T 0.48 TCGA-90-A4ED-01 16 75512875 75512875 G A CHST6 Silent p.I284I 0.43 TCGA-90-A4ED-01 16 772447 772447 C T FAM173A Missense_Mutation p.P200S 0.37 tolerated(0.44) benign(0.048) TCGA-90-A4ED-01 16 81095316 81095316 G A C16orf46 Missense_Mutation p.P213L 0.49 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 16 825464 825464 G A MSLNL Nonsense_Mutation p.Q433* 0.39 TCGA-90-A4ED-01 16 87445393 87445393 G A ZCCHC14 Silent p.Y841Y 0.52 TCGA-90-A4ED-01 16 8889981 8889981 G A TMEM186 Missense_Mutation p.P157L 0.17 deleterious(0.02) benign(0.323) TCGA-90-A4ED-01 16 8895683 8895683 C T PMM2 Silent p.L32L 0.42 TCGA-90-A4ED-01 16 89775732 89775732 C T VPS9D1 Silent p.E500E 0.56 TCGA-90-A4ED-01 16 90104181 90104181 C T GAS8 Silent p.A312A 0.46 TCGA-90-A4ED-01 16 9197033 9197033 C T C16orf72 Missense_Mutation p.S167F 0.27 deleterious(0.01) possibly_damaging(0.667) TCGA-90-A4ED-01 16 9857808 9857808 G A GRIN2A Missense_Mutation p.S1198F 0.40 tolerated(0.09) benign(0.003) TCGA-90-A4ED-01 16 9858709 9858709 G A GRIN2A Missense_Mutation p.L898F 0.30 deleterious(0.02) probably_damaging(0.971) TCGA-90-A4ED-01 16 9943750 9943750 G A GRIN2A Silent p.S397S 0.36 TCGA-90-A4ED-01 17 10356235 10356235 C T MYH4 Silent p.L1042L 0.25 TCGA-90-A4ED-01 17 10366208 10366208 C T MYH4 Missense_Mutation p.D328N 0.26 deleterious(0.01) probably_damaging(1) TCGA-90-A4ED-01 17 10399368 10399368 C T MYH1 Missense_Mutation p.E1690K 0.33 deleterious(0.05) probably_damaging(0.996) TCGA-90-A4ED-01 17 10406061 10406061 C T MYH1 Silent p.V1035V 0.25 TCGA-90-A4ED-01 17 11648312 11648312 C T DNAH9 Missense_Mutation p.P2104S 0.19 possibly_damaging(0.862) TCGA-90-A4ED-01 17 11671916 11671916 C T DNAH9 Silent p.F2439F 0.32 TCGA-90-A4ED-01 17 11696833 11696833 C T DNAH9 Missense_Mutation p.S2692F 0.24 possibly_damaging(0.452) TCGA-90-A4ED-01 17 1538171 1538171 C T SCARF1 Missense_Mutation p.E792K 0.26 tolerated(0.09) benign(0.016) TCGA-90-A4ED-01 17 1635749 1635749 C T WDR81 Nonsense_Mutation p.Q1430* 0.28 TCGA-90-A4ED-01 17 1747903 1747903 C T RPA1 Silent p.L65L 0.12 TCGA-90-A4ED-01 17 17699646 17699646 C T RAI1 Silent p.T1128T 0.15 TCGA-90-A4ED-01 17 17701229 17701229 C T RAI1 Missense_Mutation p.S1656F 0.27 deleterious(0) benign(0.275) TCGA-90-A4ED-01 17 18541647 18541647 G A TBC1D28 Silent p.S122S 0.27 TCGA-90-A4ED-01 17 18647623 18647623 C T FBXW10 Silent p.S22S 0.28 TCGA-90-A4ED-01 17 18651365 18651365 C T FBXW10 Missense_Mutation p.P206L 0.28 deleterious(0.02) benign(0.167) TCGA-90-A4ED-01 17 19091451 19091451 T C SNORD3A RNA 0.05 TCGA-90-A4ED-01 17 1939826 1939826 C T DPH1 Missense_Mutation p.P140L 0.27 deleterious(0) probably_damaging(0.984) TCGA-90-A4ED-01 17 1940218 1940218 C T DPH1 Silent p.S221S 0.17 TCGA-90-A4ED-01 17 19449813 19449813 C T SLC47A1 Silent p.S101S 0.33 TCGA-90-A4ED-01 17 21217635 21217635 C T MAP2K3 3'UTR 0.17 TCGA-90-A4ED-01 17 21730935 21730935 C T UBBP4 Silent p.I79I 0.25 TCGA-90-A4ED-01 17 2291186 2291186 G A MNT Missense_Mutation p.P322L 0.19 deleterious(0) probably_damaging(0.973) TCGA-90-A4ED-01 17 25944402 25944402 C T KSR1 Missense_Mutation p.P744S 0.22 deleterious(0) probably_damaging(0.987) TCGA-90-A4ED-01 17 27237314 27237314 G A PHF12 Silent p.P763P 0.59 TCGA-90-A4ED-01 17 27794167 27794167 G A TAOK1 Missense_Mutation p.R46Q 0.46 tolerated(0.13) benign(0.317) TCGA-90-A4ED-01 17 2883644 2883644 C T RAP1GAP2 Silent p.V220V 0.18 TCGA-90-A4ED-01 17 3101432 3101432 C T OR1A2 Missense_Mutation p.S207F 0.24 tolerated(0.71) probably_damaging(0.982) TCGA-90-A4ED-01 17 3118921 3118921 G A OR1A1 Missense_Mutation p.E3K 0.28 tolerated(0.92) benign(0.003) TCGA-90-A4ED-01 17 3144381 3144381 C T OR1D4 RNA 0.29 TCGA-90-A4ED-01 17 32614631 32614631 C T CCL11 Silent p.I72I 0.18 TCGA-90-A4ED-01 17 33267586 33267586 G A CCT6B Missense_Mutation p.R314C 0.31 tolerated(0.09) benign(0.441) TCGA-90-A4ED-01 17 3343629 3343629 G A SPATA22 Missense_Mutation p.R302C 0.19 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 17 33806525 33806525 C T SLFN12L Missense_Mutation p.R235Q 0.34 tolerated(0.48) probably_damaging(0.996) TCGA-90-A4ED-01 17 33806839 33806839 C T SLFN12L Silent p.L130L 0.33 TCGA-90-A4ED-01 17 34958639 34958639 G T MRM1 Missense_Mutation p.A134S 0.74 tolerated(0.26) benign(0.006) TCGA-90-A4ED-01 17 36353691 36353691 G A RP11-1407O15.2 Silent p.F390F 0.07 TCGA-90-A4ED-01 17 3667178 3667178 G A ITGAE Missense_Mutation p.L78F 0.29 tolerated_low_confidence(0.71) benign(0.002) TCGA-90-A4ED-01 17 36719144 36719144 G A SRCIN1 Silent p.D251D 0.45 TCGA-90-A4ED-01 17 36872707 36872707 C T MLLT6 Missense_Mutation p.P375L 0.56 tolerated(0.2) unknown(0) TCGA-90-A4ED-01 17 36872708 36872708 C T MLLT6 Silent p.P375P 0.55 TCGA-90-A4ED-01 17 36927365 36927365 G A PIP4K2B Missense_Mutation p.P323L 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-90-A4ED-01 17 36927366 36927366 G A PIP4K2B Missense_Mutation p.P323S 0.44 tolerated(0.36) probably_damaging(0.997) TCGA-90-A4ED-01 17 37898946 37898946 C A GRB7 Missense_Mutation p.P118T 0.17 deleterious(0.04) possibly_damaging(0.547) TCGA-90-A4ED-01 17 37898947 37898947 C T GRB7 Missense_Mutation p.P118L 0.17 deleterious(0) possibly_damaging(0.798) TCGA-90-A4ED-01 17 38131251 38131251 C T GSDMA Silent p.F335F 0.23 TCGA-90-A4ED-01 17 38142893 38142893 C T PSMD3 Silent p.L159L 0.59 TCGA-90-A4ED-01 17 38142894 38142894 C T PSMD3 Silent p.L160L 0.59 TCGA-90-A4ED-01 17 38172023 38172023 C T CSF3 Silent p.P40P 0.62 TCGA-90-A4ED-01 17 38449723 38449723 T C CDC6 Missense_Mutation p.F226L 0.21 tolerated(0.4) benign(0.06) TCGA-90-A4ED-01 17 39084546 39084546 C T KRT23 Missense_Mutation p.E289K 0.54 deleterious(0) possibly_damaging(0.906) TCGA-90-A4ED-01 17 39114764 39114764 G A KRT39 3'UTR 0.40 TCGA-90-A4ED-01 17 39595093 39595093 C T KRT38 Silent p.R250R 0.54 TCGA-90-A4ED-01 17 40004200 40004200 G A KLHL10 Missense_Mutation p.G490R 0.52 deleterious(0) probably_damaging(0.993) TCGA-90-A4ED-01 17 40354780 40354780 G A STAT5B Silent p.V708V 0.24 TCGA-90-A4ED-01 17 4057979 4057979 G A CYB5D2 Missense_Mutation p.G135R 0.22 deleterious(0) probably_damaging(0.945) TCGA-90-A4ED-01 17 4084648 4084648 G A ANKFY1 Missense_Mutation p.A756V 0.20 tolerated(0.19) benign(0.005) TCGA-90-A4ED-01 17 40854917 40854917 C - EZH1 Frame_Shift_Del p.E721Kfs*62 0.19 TCGA-90-A4ED-01 17 40932742 40932742 C T WNK4 Missense_Mutation p.T9I 0.16 deleterious_low_confidence(0.01) unknown(0) TCGA-90-A4ED-01 17 40962934 40962934 C T BECN1 Silent p.E399E 0.29 TCGA-90-A4ED-01 17 41143114 41143114 C T RUNDC1 Missense_Mutation p.S408F 0.33 tolerated(0.06) benign(0.374) TCGA-90-A4ED-01 17 41930298 41930298 C T CD300LG Missense_Mutation p.S133F 0.62 deleterious(0.01) probably_damaging(0.986) TCGA-90-A4ED-01 17 42030303 42030303 C T PYY 3'UTR 0.63 TCGA-90-A4ED-01 17 42169894 42169894 G A HDAC5 Silent p.A259A 0.64 TCGA-90-A4ED-01 17 42475254 42475254 G A GPATCH8 Silent p.P1397P 0.69 TCGA-90-A4ED-01 17 44248695 44248695 G A KANSL1 Missense_Mutation p.S272F 0.40 deleterious(0.01) possibly_damaging(0.474) TCGA-90-A4ED-01 17 44249238 44249238 G A KANSL1 Missense_Mutation p.P91L 0.29 deleterious(0) possibly_damaging(0.682) TCGA-90-A4ED-01 17 44374708 44374708 C G LRRC37A Missense_Mutation p.P737A 0.29 tolerated(0.07) possibly_damaging(0.629) TCGA-90-A4ED-01 17 4576069 4576069 G A PELP1 Silent p.I739I 0.26 TCGA-90-A4ED-01 17 4607474 4607474 G A PELP1 5'Flank 0.33 TCGA-90-A4ED-01 17 46423301 46423301 G A SKAP1 Silent p.S82S 0.52 TCGA-90-A4ED-01 17 46423302 46423302 G A SKAP1 Missense_Mutation p.S82F 0.52 deleterious(0) possibly_damaging(0.8) TCGA-90-A4ED-01 17 4644984 4644984 G A ZMYND15 Missense_Mutation p.G234S 0.21 tolerated_low_confidence(0.13) benign(0.02) TCGA-90-A4ED-01 17 46671104 46671104 G A HOXB5 5'UTR 0.17 TCGA-90-A4ED-01 17 46865189 46865189 G T TTLL6 Silent p.R525R 0.05 TCGA-90-A4ED-01 17 47394349 47394349 A C ZNF652 Missense_Mutation p.C247G 0.20 deleterious(0) probably_damaging(0.997) TCGA-90-A4ED-01 17 48918406 48918406 C T WFIKKN2 3'UTR 0.60 TCGA-90-A4ED-01 17 489558 489558 G A VPS53 Missense_Mutation p.S422F 0.32 deleterious(0.01) probably_damaging(0.952) TCGA-90-A4ED-01 17 56572785 56572785 G A MTMR4 Silent p.N906N 0.40 TCGA-90-A4ED-01 17 56676317 56676317 G A TEX14 Missense_Mutation p.P803S 0.16 deleterious(0.01) probably_damaging(0.963) TCGA-90-A4ED-01 17 56676675 56676675 C T TEX14 Silent p.E683E 0.65 TCGA-90-A4ED-01 17 56780598 56780598 C T RAD51C Missense_Mutation p.L205F 0.58 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 17 58236833 58236833 T C CA4 3'UTR 0.25 TCGA-90-A4ED-01 17 60813653 60813653 C T MARCH10 Missense_Mutation p.E526K 0.22 deleterious(0) possibly_damaging(0.67) TCGA-90-A4ED-01 17 61432477 61432477 C T TANC2 Missense_Mutation p.P696S 0.29 tolerated(0.17) possibly_damaging(0.54) TCGA-90-A4ED-01 17 61950053 61950053 C T CSH2 Missense_Mutation p.E114K 0.45 tolerated(0.75) probably_damaging(0.994) TCGA-90-A4ED-01 17 61973862 61973862 C T CSH1 Missense_Mutation p.G4S 0.57 tolerated(0.07) benign(0.125) TCGA-90-A4ED-01 17 62270949 62270949 T A TEX2 Nonsense_Mutation p.K716* 0.24 TCGA-90-A4ED-01 17 62461613 62461613 G A MILR1 Missense_Mutation p.A16T 0.39 tolerated(0.19) benign(0.025) TCGA-90-A4ED-01 17 62754435 62754435 C T hsa-mir-6080 RNA 0.60 TCGA-90-A4ED-01 17 62856634 62856634 G A LRRC37A3 Silent p.A1210A 0.21 TCGA-90-A4ED-01 17 63193355 63193355 C T RGS9 Silent p.F324F 0.17 TCGA-90-A4ED-01 17 66364833 66364833 C T ARSG Silent p.I283I 0.61 TCGA-90-A4ED-01 17 66992141 66992141 C T ABCA9 Silent p.S1150S 0.70 TCGA-90-A4ED-01 17 67210980 67210980 C T ABCA10 Missense_Mutation p.D291N 0.53 deleterious(0) probably_damaging(0.984) TCGA-90-A4ED-01 17 68128391 68128391 G A KCNJ16 Missense_Mutation p.G55R 0.37 tolerated(0.57) possibly_damaging(0.907) TCGA-90-A4ED-01 17 68128823 68128823 C T KCNJ16 Missense_Mutation p.L199F 0.67 deleterious(0.01) probably_damaging(1) TCGA-90-A4ED-01 17 68171909 68171909 C T KCNJ2 Silent p.I243I 0.24 TCGA-90-A4ED-01 17 68172390 68172390 C T KCNJ2 Missense_Mutation p.P404S 0.55 tolerated(0.88) benign(0.001) TCGA-90-A4ED-01 17 7077260 7077260 G A ASGR1 Intron 0.24 TCGA-90-A4ED-01 17 71165924 71165924 C T SSTR2 Missense_Mutation p.P156S 0.19 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 17 72308208 72308208 G A DNAI2 Missense_Mutation p.E521K 0.69 tolerated(0.11) benign(0.002) TCGA-90-A4ED-01 17 72915760 72915760 G A USH1G Missense_Mutation p.P391S 0.16 deleterious(0) possibly_damaging(0.63) TCGA-90-A4ED-01 17 73495409 73495409 C T KIAA0195 Silent p.P1355P 0.12 TCGA-90-A4ED-01 17 7367059 7367059 G A ZBTB4 Silent p.L414L 0.26 TCGA-90-A4ED-01 17 7369770 7369770 G A ZBTB4 Silent p.P117P 0.21 TCGA-90-A4ED-01 17 7369771 7369771 G A ZBTB4 Missense_Mutation p.P117L 0.21 unknown(0) TCGA-90-A4ED-01 17 73870642 73870642 G A TRIM47 Silent p.F613F 0.64 TCGA-90-A4ED-01 17 74004086 74004086 C T EVPL Missense_Mutation p.E1734K 0.42 deleterious(0.01) probably_damaging(0.997) TCGA-90-A4ED-01 17 7406556 7406556 G A POLR2A Missense_Mutation p.R958Q 0.20 benign(0.008) TCGA-90-A4ED-01 17 74266361 74266361 C T UBALD2 Silent p.G90G 0.71 TCGA-90-A4ED-01 17 74622164 74622164 C T ST6GALNAC1 Missense_Mutation p.E477K 0.52 possibly_damaging(0.643) TCGA-90-A4ED-01 17 75202443 75202443 C T SEC14L1 Silent p.I434I 0.69 TCGA-90-A4ED-01 17 7536555 7536555 G A SHBG Missense_Mutation p.G365D 0.29 tolerated(0.27) benign(0.055) TCGA-90-A4ED-01 17 7701642 7701642 G A DNAH2 Missense_Mutation p.D2800N 0.19 probably_damaging(0.992) TCGA-90-A4ED-01 17 78222430 78222430 C T SLC26A11 Silent p.A493A 0.73 TCGA-90-A4ED-01 17 78293285 78293285 C T RNF213 Intron 0.14 TCGA-90-A4ED-01 17 78321325 78321325 C T RNF213 Nonsense_Mutation p.Q3064* 0.16 TCGA-90-A4ED-01 17 7916555 7916555 G A GUCY2D Missense_Mutation p.E750K 0.27 tolerated(0.09) benign(0.428) TCGA-90-A4ED-01 17 79176126 79176126 G A AZI1 Silent p.S234S 0.17 TCGA-90-A4ED-01 17 79428477 79428477 C T RP11-1055B8.7 Missense_Mutation p.P2263L 0.77 benign(0.204) TCGA-90-A4ED-01 17 79428478 79428478 C T RP11-1055B8.7 Silent p.P2263P 0.75 TCGA-90-A4ED-01 17 79872002 79872002 G A SIRT7 Silent p.P286P 0.24 TCGA-90-A4ED-01 17 8064169 8064169 G A VAMP2 3'UTR 0.18 TCGA-90-A4ED-01 17 8272676 8272676 C T KRBA2 Missense_Mutation p.G419R 0.23 tolerated(0.06) benign(0.21) TCGA-90-A4ED-01 17 8383812 8383812 C T MYH10 Missense_Mutation p.E1766K 0.29 probably_damaging(0.994) TCGA-90-A4ED-01 17 8702108 8702108 C T MFSD6L Missense_Mutation p.G111R 0.20 tolerated(0.49) benign(0.055) TCGA-90-A4ED-01 17 8791527 8791527 C T PIK3R5 Missense_Mutation p.R526Q 0.28 deleterious(0.03) probably_damaging(0.983) TCGA-90-A4ED-01 17 9489237 9489237 C T WDR16 Missense_Mutation p.S73F 0.22 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 17 9489238 9489238 C T WDR16 Silent p.S73S 0.21 TCGA-90-A4ED-01 17 9792816 9792816 G A GLP2R Missense_Mutation p.G486S 0.23 tolerated(0.73) benign(0.002) TCGA-90-A4ED-01 18 12351162 12351162 G A AFG3L2 Nonsense_Mutation p.R492* 0.32 TCGA-90-A4ED-01 18 13681870 13681870 C T FAM210A Silent p.R69R 0.34 TCGA-90-A4ED-01 18 13826451 13826451 G A MC5R Silent p.R229R 0.38 TCGA-90-A4ED-01 18 14479164 14479164 C T CXADRP3 RNA 0.33 TCGA-90-A4ED-01 18 14534953 14534953 C T POTEC Silent p.V288V 0.09 TCGA-90-A4ED-01 18 14542753 14542753 C T POTEC Silent p.P131P 0.26 TCGA-90-A4ED-01 18 14850253 14850253 G A ANKRD30B Missense_Mutation p.D1027N 0.40 tolerated(0.12) benign(0.17) TCGA-90-A4ED-01 18 19780720 19780720 C T GATA6 Silent p.L574L 0.38 TCGA-90-A4ED-01 18 20833810 20833810 G A CABLES1 Silent p.Q557Q 0.15 TCGA-90-A4ED-01 18 21453076 21453076 G A LAMA3 Intron 0.15 TCGA-90-A4ED-01 18 22642648 22642648 C T ZNF521 3'UTR 0.16 TCGA-90-A4ED-01 18 25585824 25585824 C T CDH2 Missense_Mutation p.G279E 0.14 deleterious(0) probably_damaging(0.993) TCGA-90-A4ED-01 18 28934722 28934722 G A DSG1 Missense_Mutation p.D855N 0.42 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 18 334928 334928 G A COLEC12 Missense_Mutation p.P544S 0.62 tolerated(0.21) unknown(0) TCGA-90-A4ED-01 18 34802089 34802089 C T KIAA1328 Nonsense_Mutation p.R545* 0.52 TCGA-90-A4ED-01 18 42530978 42530978 C T SETBP1 Missense_Mutation p.P558L 0.38 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 18 42618532 42618532 G A SETBP1 Silent p.R1361R 0.44 TCGA-90-A4ED-01 18 43249454 43249454 A G SLC14A2 Silent p.Q740Q 0.10 TCGA-90-A4ED-01 18 47101754 47101754 G T LIPG Missense_Mutation p.G196V 0.36 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 18 47809333 47809333 A T CXXC1 Missense_Mutation p.V576D 0.16 deleterious(0) probably_damaging(0.994) TCGA-90-A4ED-01 18 47809334 47809334 C T CXXC1 Missense_Mutation p.V576I 0.16 deleterious(0.02) probably_damaging(0.971) TCGA-90-A4ED-01 18 50929253 50929253 G A DCC Silent p.G975G 0.18 TCGA-90-A4ED-01 18 54291579 54291579 G A TXNL1 Silent p.I103I 0.38 TCGA-90-A4ED-01 18 5478368 5478368 C T EPB41L3 Missense_Mutation p.D85N 0.26 deleterious(0) probably_damaging(0.987) TCGA-90-A4ED-01 18 55104001 55104001 C T ONECUT2 Silent p.I351I 0.11 TCGA-90-A4ED-01 18 56033374 56033374 C T NEDD4L Silent p.D659D 0.15 TCGA-90-A4ED-01 18 58038908 58038908 C T MC4R Silent p.R225R 0.42 TCGA-90-A4ED-01 18 59894587 59894587 C T KIAA1468 Silent p.Y308Y 0.31 TCGA-90-A4ED-01 18 60052084 60052084 G A TNFRSF11A Silent p.Q556Q 0.47 TCGA-90-A4ED-01 18 61306512 61306512 C T SERPINB4 Silent p.E225E 0.26 TCGA-90-A4ED-01 18 61309036 61309036 G A SERPINB4 Silent p.I103I 0.38 TCGA-90-A4ED-01 18 61649008 61649008 C T SERPINB8 Silent p.S120S 0.29 TCGA-90-A4ED-01 18 64197182 64197182 G A CDH19 Missense_Mutation p.S453L 0.33 tolerated(0.07) benign(0.064) TCGA-90-A4ED-01 18 66504067 66504067 A T CCDC102B Missense_Mutation p.I23F 0.22 tolerated(0.24) benign(0.22) TCGA-90-A4ED-01 18 66506142 66506142 A T CCDC102B Missense_Mutation p.K269I 0.34 deleterious(0) probably_damaging(0.98) TCGA-90-A4ED-01 18 70526214 70526214 C T NETO1 Missense_Mutation p.G106R 0.12 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 18 7231538 7231538 C T LRRC30 Silent p.A134A 0.16 TCGA-90-A4ED-01 18 72999035 72999035 C T TSHZ1 Missense_Mutation p.T513I 0.30 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 18 72999036 72999036 C T TSHZ1 Silent p.T513T 0.31 TCGA-90-A4ED-01 18 74610984 74610984 C T ZNF236 Missense_Mutation p.P565L 0.26 deleterious(0) probably_damaging(0.969) TCGA-90-A4ED-01 18 76752151 76752151 G A SALL3 Missense_Mutation p.E54K 0.21 tolerated(0.25) unknown(0) TCGA-90-A4ED-01 18 8296440 8296440 G A PTPRM Silent p.G943G 0.34 TCGA-90-A4ED-01 19 10166299 10166299 C T C3P1 RNA 0.26 TCGA-90-A4ED-01 19 10203301 10203301 C T ANGPTL6 Silent p.R459R 0.30 TCGA-90-A4ED-01 19 10203302 10203302 C T ANGPTL6 Missense_Mutation p.R459K 0.29 tolerated(1) benign(0.002) TCGA-90-A4ED-01 19 10335042 10335042 G A S1PR2 Silent p.S180S 0.30 TCGA-90-A4ED-01 19 10335453 10335453 G A S1PR2 Silent p.L43L 0.28 TCGA-90-A4ED-01 19 10625538 10625538 G A S1PR5 Silent p.I50I 0.40 TCGA-90-A4ED-01 19 10657657 10657657 C T ATG4D Silent p.H212H 0.31 TCGA-90-A4ED-01 19 10904501 10904501 C T DNM2 Silent p.F366F 0.26 TCGA-90-A4ED-01 19 1095392 1095392 G A POLR2E 5'UTR 0.20 TCGA-90-A4ED-01 19 11303778 11303778 G A KANK2 Silent p.R326R 0.36 TCGA-90-A4ED-01 19 11486554 11486554 G T SWSAP1 Silent p.L184L 0.38 TCGA-90-A4ED-01 19 11560122 11560122 C T PRKCSH Silent p.T494T 0.23 TCGA-90-A4ED-01 19 11568887 11568887 G A ELAVL3 Silent p.T234T 0.21 TCGA-90-A4ED-01 19 11891576 11891576 T C ZNF441 Missense_Mutation p.C313R 0.23 deleterious(0) possibly_damaging(0.765) TCGA-90-A4ED-01 19 11944263 11944263 C T ZNF440 3'UTR 0.40 TCGA-90-A4ED-01 19 11944264 11944264 C T ZNF440 3'UTR 0.40 TCGA-90-A4ED-01 19 12090466 12090466 C T ZNF763 3'UTR 0.29 TCGA-90-A4ED-01 19 12429369 12429369 G A ZNF563 3'UTR 0.32 TCGA-90-A4ED-01 19 12575778 12575778 G A ZNF709 Missense_Mutation p.P320S 0.27 tolerated(0.46) probably_damaging(0.996) TCGA-90-A4ED-01 19 12812947 12812947 G A TNPO2 Missense_Mutation p.R784C 0.15 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 19 12867094 12867094 C T BEST2 Missense_Mutation p.S363F 0.28 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 19 12979953 12979953 G A MAST1 Silent p.R949R 0.32 TCGA-90-A4ED-01 19 13365954 13365954 C T CACNA1A Silent p.T1570T 0.34 TCGA-90-A4ED-01 19 13419286 13419286 G C CACNA1A Silent p.S575S 0.33 TCGA-90-A4ED-01 19 1390938 1390938 C T NDUFS7 Silent p.P99P 0.18 TCGA-90-A4ED-01 19 14231448 14231448 G A ASF1B Silent p.P144P 0.23 TCGA-90-A4ED-01 19 1478850 1478850 G A C19orf25 Missense_Mutation p.P18L 0.24 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 19 1478851 1478851 G A C19orf25 Missense_Mutation p.P18S 0.24 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 19 14857735 14857735 G A EMR2 Silent p.F688F 0.42 TCGA-90-A4ED-01 19 14863312 14863312 G A EMR2 Silent p.I539I 0.26 TCGA-90-A4ED-01 19 14866655 14866655 C T EMR2 Silent p.G409G 0.43 TCGA-90-A4ED-01 19 1495357 1495357 C T REEP6 Silent p.L60L 0.27 TCGA-90-A4ED-01 19 15063794 15063794 G A SLC1A6 Missense_Mutation p.S482L 0.28 deleterious(0) probably_damaging(0.988) TCGA-90-A4ED-01 19 15221329 15221329 C T SYDE1 Intron 0.58 TCGA-90-A4ED-01 19 15338879 15338879 G A EPHX3 Missense_Mutation p.R217C 0.18 deleterious(0) possibly_damaging(0.502) TCGA-90-A4ED-01 19 15514456 15514456 G A AKAP8L Silent p.A64A 0.29 TCGA-90-A4ED-01 19 15536291 15536291 G A WIZ Missense_Mutation p.S457L 0.33 tolerated(0.26) benign(0.057) TCGA-90-A4ED-01 19 15734858 15734858 G A CYP4F8 RNA 0.21 TCGA-90-A4ED-01 19 15752308 15752308 C T CYP4F3 Missense_Mutation p.S28F 0.24 tolerated(0.1) benign(0.033) TCGA-90-A4ED-01 19 15918078 15918078 G A OR10H1 Missense_Mutation p.S257F 0.19 deleterious(0.01) probably_damaging(1) TCGA-90-A4ED-01 19 1615492 1615492 G A TCF3 Silent p.L538L 0.28 TCGA-90-A4ED-01 19 16910908 16910908 G A NWD1 Missense_Mutation p.G1224E 0.18 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 19 16918543 16918543 C T NWD1 Missense_Mutation p.P1295S 0.24 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 19 16918544 16918544 C T NWD1 Missense_Mutation p.P1295L 0.25 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 19 17394937 17394937 C T ANKLE1 Missense_Mutation p.A413V 0.15 deleterious(0.02) possibly_damaging(0.562) TCGA-90-A4ED-01 19 17769010 17769010 G A UNC13A Missense_Mutation p.P210S 0.20 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-90-A4ED-01 19 17845235 17845235 T C MAP1S Nonstop_Mutation p.*1060Qext*16 0.29 TCGA-90-A4ED-01 19 17942520 17942520 G T JAK3 Missense_Mutation p.A923D 0.33 tolerated(0.2) benign(0.031) TCGA-90-A4ED-01 19 17988875 17988875 C T SLC5A5 Silent p.L314L 0.29 TCGA-90-A4ED-01 19 17988876 17988876 C T SLC5A5 Silent p.L315L 0.30 TCGA-90-A4ED-01 19 18092838 18092838 C T KCNN1 Silent p.V273V 0.19 TCGA-90-A4ED-01 19 18377607 18377607 G A KIAA1683 Missense_Mutation p.P248L 0.23 deleterious(0.04) probably_damaging(0.915) TCGA-90-A4ED-01 19 18724697 18724697 G A TMEM59L Missense_Mutation p.A63T 0.42 tolerated(0.45) benign(0.002) TCGA-90-A4ED-01 19 19030498 19030498 G A DDX49 5'UTR 0.37 TCGA-90-A4ED-01 19 19329794 19329794 G A NCAN Silent p.Q48Q 0.24 TCGA-90-A4ED-01 19 19407948 19407948 G A SUGP1 Missense_Mutation p.P365S 0.31 tolerated(0.33) benign(0.146) TCGA-90-A4ED-01 19 19656265 19656265 G A CILP2 Missense_Mutation p.G971R 0.41 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 19 21240773 21240773 C T ZNF430 Silent p.S553S 0.29 TCGA-90-A4ED-01 19 21909831 21909831 G A ZNF100 Missense_Mutation p.P428L 0.33 deleterious(0.02) benign(0.327) TCGA-90-A4ED-01 19 22154791 22154791 G A ZNF208 Silent p.N1015N 0.23 TCGA-90-A4ED-01 19 22155598 22155598 C T ZNF208 Silent p.E746E 0.22 TCGA-90-A4ED-01 19 22272216 22272216 C T ZNF257 Missense_Mutation p.S555F 0.28 tolerated(0.31) benign(0.019) TCGA-90-A4ED-01 19 2229801 2229801 C T DOT1L 3'UTR 0.19 TCGA-90-A4ED-01 19 22574578 22574578 C T ZNF98 Missense_Mutation p.E487K 0.18 tolerated(0.06) probably_damaging(0.955) TCGA-90-A4ED-01 19 22574760 22574760 C T ZNF98 Missense_Mutation p.R426K 0.19 tolerated(0.72) benign(0.021) TCGA-90-A4ED-01 19 22586297 22586297 C T ZNF98 Silent p.R16R 0.20 TCGA-90-A4ED-01 19 2291263 2291263 C T LINGO3 Silent p.A171A 0.34 TCGA-90-A4ED-01 19 22952100 22952100 G T ZNF99 Silent p.T10T 0.18 TCGA-90-A4ED-01 19 23544818 23544818 G A ZNF91 Silent p.P321P 0.23 TCGA-90-A4ED-01 19 2794781 2794781 C T THOP1 Silent p.D83D 0.25 TCGA-90-A4ED-01 19 30936178 30936178 G A ZNF536 Missense_Mutation p.G570E 0.26 tolerated(0.13) possibly_damaging(0.511) TCGA-90-A4ED-01 19 30936598 30936598 C T ZNF536 Missense_Mutation p.A710V 0.24 tolerated(0.51) probably_damaging(0.993) TCGA-90-A4ED-01 19 31040265 31040265 G A ZNF536 Missense_Mutation p.G1247S 0.26 deleterious_low_confidence(0.03) benign(0.006) TCGA-90-A4ED-01 19 3150230 3150230 C T GNA15 Silent p.I144I 0.28 TCGA-90-A4ED-01 19 3163049 3163049 C T GNA15 3'UTR 0.28 TCGA-90-A4ED-01 19 33696605 33696605 T G LRP3 Missense_Mutation p.V310G 0.27 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 19 34003568 34003568 G A PEPD Silent p.S44S 0.39 TCGA-90-A4ED-01 19 35514155 35514155 C T GRAMD1A Silent p.I623I 0.26 TCGA-90-A4ED-01 19 35793398 35793398 G A MAG Missense_Mutation p.G340R 0.32 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 19 35832745 35832745 C T CD22 Missense_Mutation p.P638S 0.31 tolerated(0.11) benign(0.063) TCGA-90-A4ED-01 19 36145477 36145477 C T COX6B1 Silent p.F37F 0.25 TCGA-90-A4ED-01 19 36233560 36233560 G A U2AF1L4 Missense_Mutation p.S183F 0.30 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-90-A4ED-01 19 36271691 36271691 C T ARHGAP33 Missense_Mutation p.P268S 0.25 tolerated_low_confidence(0.18) possibly_damaging(0.803) TCGA-90-A4ED-01 19 36321976 36321976 C T NPHS1 Missense_Mutation p.E1154K 0.38 deleterious(0.01) probably_damaging(0.948) TCGA-90-A4ED-01 19 36333155 36333155 G A NPHS1 Missense_Mutation p.P845L 0.24 tolerated(0.12) benign(0.315) TCGA-90-A4ED-01 19 37440578 37440578 T C ZNF568 Missense_Mutation p.F175L 0.25 tolerated(0.67) benign(0) TCGA-90-A4ED-01 19 3783124 3783124 C T MATK Missense_Mutation p.A227T 0.34 tolerated(0.09) benign(0.017) TCGA-90-A4ED-01 19 37853764 37853764 C T HKR1 Missense_Mutation p.P356L 0.23 deleterious(0.01) possibly_damaging(0.682) TCGA-90-A4ED-01 19 38188280 38188280 G A ZNF607 3'UTR 0.45 TCGA-90-A4ED-01 19 38655420 38655420 G C SIPA1L3 Missense_Mutation p.R1361P 0.25 tolerated(0.07) possibly_damaging(0.749) TCGA-90-A4ED-01 19 39018338 39018338 C T RYR1 Missense_Mutation p.P3580S 0.30 benign(0.03) TCGA-90-A4ED-01 19 39215157 39215157 C T ACTN4 Silent p.F654F 0.39 TCGA-90-A4ED-01 19 39823730 39823730 C T GMFG Missense_Mutation p.E63K 0.22 tolerated(0.24) benign(0.031) TCGA-90-A4ED-01 19 39860353 39860353 C T SAMD4B Silent p.S85S 0.24 TCGA-90-A4ED-01 19 40195162 40195162 G A LGALS14 5'UTR 0.16 TCGA-90-A4ED-01 19 4028834 4028834 G A PIAS4 Silent p.G263G 0.24 TCGA-90-A4ED-01 19 40316600 40316600 G A DYRK1B Missense_Mutation p.L549F 0.26 deleterious_low_confidence(0.04) probably_damaging(0.986) TCGA-90-A4ED-01 19 40368769 40368769 G A FCGBP Silent p.V4193V 0.14 TCGA-90-A4ED-01 19 40419943 40419943 C T FCGBP Silent p.R1017R 0.17 TCGA-90-A4ED-01 19 40430366 40430366 G A FCGBP Missense_Mutation p.S526F 0.26 probably_damaging(1) TCGA-90-A4ED-01 19 40902330 40902330 C T PRX Silent p.K643K 0.29 TCGA-90-A4ED-01 19 40947771 40947771 G C SERTAD3 Missense_Mutation p.P73A 0.15 tolerated(0.33) benign(0.091) TCGA-90-A4ED-01 19 41206260 41206260 G A ADCK4 Silent p.V330V 0.52 TCGA-90-A4ED-01 19 41271103 41271103 C T SNRPA 3'UTR 0.33 TCGA-90-A4ED-01 19 42091820 42091820 G A CEACAM21 Silent p.R274R 0.30 TCGA-90-A4ED-01 19 42300618 42300618 C T CEACAM3 Silent p.P3P 0.18 TCGA-90-A4ED-01 19 42314027 42314027 G A CEACAM3 Silent p.K189K 0.20 TCGA-90-A4ED-01 19 42314028 42314028 G A CEACAM3 Missense_Mutation p.E190K 0.20 deleterious(0.01) benign(0.035) TCGA-90-A4ED-01 19 42558550 42558550 C T GRIK5 Silent p.E326E 0.25 TCGA-90-A4ED-01 19 42753418 42753418 C G ERF Silent p.T282T 0.23 TCGA-90-A4ED-01 19 42854496 42854496 C T MEGF8 Missense_Mutation p.P832L 0.32 tolerated(0.17) possibly_damaging(0.458) TCGA-90-A4ED-01 19 42937990 42937990 C T CXCL17 Missense_Mutation p.R33K 0.24 tolerated(0.43) benign(0.011) TCGA-90-A4ED-01 19 43268383 43268383 C T PSG8 Missense_Mutation p.E39K 0.26 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 19 43376078 43376078 C T PSG1 Missense_Mutation p.G184S 0.28 tolerated(0.12) probably_damaging(0.95) TCGA-90-A4ED-01 19 43376155 43376155 G A PSG1 Missense_Mutation p.P158L 0.23 deleterious(0) possibly_damaging(0.498) TCGA-90-A4ED-01 19 43376156 43376156 G A PSG1 Missense_Mutation p.P158S 0.23 deleterious(0) probably_damaging(0.947) TCGA-90-A4ED-01 19 43529125 43529125 C T PSG11 Missense_Mutation p.D50N 0.25 tolerated(0.11) probably_damaging(1) TCGA-90-A4ED-01 19 43529126 43529126 C T PSG11 Silent p.K49K 0.25 TCGA-90-A4ED-01 19 43680245 43680245 C T PSG5 Silent p.K162K 0.28 TCGA-90-A4ED-01 19 43762266 43762266 G A PSG9 Intron 0.30 TCGA-90-A4ED-01 19 43920619 43920619 C T TEX101 Silent p.I119I 0.23 TCGA-90-A4ED-01 19 43979554 43979554 G A PHLDB3 3'UTR 0.16 TCGA-90-A4ED-01 19 43979685 43979685 G A PHLDB3 Silent p.P600P 0.14 TCGA-90-A4ED-01 19 4409576 4409576 C T CHAF1A Silent p.P260P 0.18 TCGA-90-A4ED-01 19 4409577 4409577 C T CHAF1A Nonsense_Mutation p.Q261* 0.17 TCGA-90-A4ED-01 19 44612136 44612136 C T ZNF224 Missense_Mutation p.S608F 0.28 tolerated(0.06) possibly_damaging(0.505) TCGA-90-A4ED-01 19 44612137 44612137 C T ZNF224 Silent p.S608S 0.28 TCGA-90-A4ED-01 19 44892050 44892050 A G ZNF285 Silent p.S119S 0.30 TCGA-90-A4ED-01 19 44932625 44932625 A C ZNF229 Missense_Mutation p.F777L 0.28 deleterious(0) probably_damaging(0.993) TCGA-90-A4ED-01 19 45024651 45024651 G A CEACAM20 RNA 0.33 TCGA-90-A4ED-01 19 4512528 4512528 C T PLIN4 Missense_Mutation p.G468R 0.28 deleterious(0) probably_damaging(0.933) TCGA-90-A4ED-01 19 45575600 45575600 C T ZNF296 Silent p.R229R 0.27 TCGA-90-A4ED-01 19 45579347 45579347 G A ZNF296 Silent p.T95T 0.26 TCGA-90-A4ED-01 19 45774741 45774741 C T MARK4 Silent p.L187L 0.35 TCGA-90-A4ED-01 19 45855526 45855526 C T ERCC2 Missense_Mutation p.D711N 0.29 deleterious(0) possibly_damaging(0.881) TCGA-90-A4ED-01 19 46094436 46094436 A T GPR4 Missense_Mutation p.I230N 0.28 deleterious(0) benign(0.283) TCGA-90-A4ED-01 19 46807216 46807216 G A HIF3A Missense_Mutation p.E30K 0.21 deleterious(0) probably_damaging(0.997) TCGA-90-A4ED-01 19 46838211 46838211 G A HIF3A Missense_Mutation p.S627N 0.24 tolerated_low_confidence(0.66) benign(0.034) TCGA-90-A4ED-01 19 47177735 47177735 G A PRKD2 3'UTR 0.33 TCGA-90-A4ED-01 19 47197271 47197271 G A PRKD2 Silent p.G479G 0.28 TCGA-90-A4ED-01 19 47539224 47539224 G A NPAS1 Silent p.V175V 0.25 TCGA-90-A4ED-01 19 47823882 47823882 C T C5AR1 Missense_Mutation p.S283F 0.26 deleterious(0) possibly_damaging(0.878) TCGA-90-A4ED-01 19 48305272 48305272 G A TPRX1 Silent p.P332P 0.28 TCGA-90-A4ED-01 19 48305273 48305273 G A TPRX1 Missense_Mutation p.P332L 0.28 deleterious(0.01) possibly_damaging(0.851) TCGA-90-A4ED-01 19 48537532 48537532 C T CABP5 Missense_Mutation p.E146K 0.31 deleterious(0.01) benign(0.013) TCGA-90-A4ED-01 19 48551629 48551629 C T PLA2G4C Missense_Mutation p.D543N 0.24 tolerated_low_confidence(0.76) benign(0.001) TCGA-90-A4ED-01 19 49148862 49148862 G A CA11 Missense_Mutation p.P10S 0.24 deleterious_low_confidence(0.04) possibly_damaging(0.857) TCGA-90-A4ED-01 19 49148863 49148863 G A CA11 Silent p.A9A 0.25 TCGA-90-A4ED-01 19 49253739 49253739 C T FUT1 Nonsense_Mutation p.W267* 0.26 TCGA-90-A4ED-01 19 49360719 49360719 G A PLEKHA4 Missense_Mutation p.P336L 0.19 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 19 49514255 49514255 G A RUVBL2 Splice_Site p.X263_splice 0.24 TCGA-90-A4ED-01 19 49656778 49656778 C T HRC Missense_Mutation p.E573K 0.30 deleterious(0.03) benign(0.016) TCGA-90-A4ED-01 19 49897833 49897833 G A CCDC155 Silent p.R48R 0.34 TCGA-90-A4ED-01 19 50017722 50017722 C T FCGRT Missense_Mutation p.R194C 0.32 deleterious(0) probably_damaging(0.972) TCGA-90-A4ED-01 19 50099055 50099055 C T PRR12 Missense_Mutation p.P488L 0.35 possibly_damaging(0.851) TCGA-90-A4ED-01 19 50128894 50128894 C T PRR12 3'UTR 0.14 TCGA-90-A4ED-01 19 50128895 50128895 C T PRR12 3'UTR 0.14 TCGA-90-A4ED-01 19 50266385 50266385 G A TSKS Silent p.T40T 0.21 TCGA-90-A4ED-01 19 50375101 50375101 G A AKT1S1 Missense_Mutation p.P162L 0.22 deleterious(0.04) probably_damaging(0.998) TCGA-90-A4ED-01 19 50435915 50435915 C T ATF5 Missense_Mutation p.P139S 0.33 tolerated(0.9) benign(0.011) TCGA-90-A4ED-01 19 50455166 50455166 G A SIGLEC11 Silent p.T604T 0.28 TCGA-90-A4ED-01 19 50455595 50455595 C T SIGLEC11 Missense_Mutation p.A570T 0.35 tolerated(1) benign(0.001) TCGA-90-A4ED-01 19 50964880 50964880 C T MYBPC2 Nonsense_Mutation p.R1005* 0.31 TCGA-90-A4ED-01 19 51128521 51128521 G A SYT3 Silent p.C535C 0.38 TCGA-90-A4ED-01 19 51273938 51273938 G A GPR32 Silent p.R27R 0.35 TCGA-90-A4ED-01 19 51363307 51363307 C T KLK3 Missense_Mutation p.P237L 0.31 deleterious(0.02) benign(0.237) TCGA-90-A4ED-01 19 51363308 51363308 C T KLK3 Silent p.P237P 0.32 TCGA-90-A4ED-01 19 51363313 51363313 G A KLK3 Missense_Mutation p.R239K 0.27 tolerated(1) benign(0) TCGA-90-A4ED-01 19 51363401 51363401 C T KLK3 3'UTR 0.21 TCGA-90-A4ED-01 19 51630351 51630351 C T SIGLEC9 Silent p.V271V 0.25 TCGA-90-A4ED-01 19 51875548 51875548 C T NKG7 Silent p.V57V 0.28 TCGA-90-A4ED-01 19 51960819 51960819 G A SIGLEC8 Missense_Mutation p.T210I 0.25 deleterious(0.02) possibly_damaging(0.649) TCGA-90-A4ED-01 19 52130779 52130779 G A SIGLEC5 Silent p.L406L 0.36 TCGA-90-A4ED-01 19 52469171 52469171 G A ZNF350 Missense_Mutation p.P179S 0.21 tolerated(0.22) benign(0.048) TCGA-90-A4ED-01 19 53209325 53209325 G A ZNF611 Missense_Mutation p.S328L 0.33 deleterious(0.01) probably_damaging(0.989) TCGA-90-A4ED-01 19 53321201 53321201 G A ZNF28 Missense_Mutation p.P4L 0.24 tolerated(0.07) benign(0.012) TCGA-90-A4ED-01 19 53484207 53484207 G A ZNF702P RNA 0.34 TCGA-90-A4ED-01 19 53770360 53770360 G A VN1R4 Missense_Mutation p.P187S 0.17 tolerated(0.07) possibly_damaging(0.775) TCGA-90-A4ED-01 19 53886191 53886191 C T ZNF525 3'UTR 0.31 TCGA-90-A4ED-01 19 54313565 54313565 G A NLRP12 Missense_Mutation p.P450S 0.23 tolerated(0.78) benign(0.178) TCGA-90-A4ED-01 19 54822824 54822824 G A LILRA5 Missense_Mutation p.P191L 0.28 tolerated(0.1) benign(0.091) TCGA-90-A4ED-01 19 54848848 54848848 C T LILRA4 Missense_Mutation p.G259R 0.15 tolerated(0.05) benign(0.169) TCGA-90-A4ED-01 19 54867867 54867867 C T LAIR1 Silent p.L212L 0.40 TCGA-90-A4ED-01 19 55087343 55087343 C T LILRA2 Missense_Mutation p.T341I 0.38 deleterious(0.02) possibly_damaging(0.708) TCGA-90-A4ED-01 19 55144753 55144753 G A LILRB1 Silent p.L415L 0.33 TCGA-90-A4ED-01 19 55175221 55175221 C T LILRB4 Missense_Mutation p.P27L 0.24 tolerated(0.17) benign(0.003) TCGA-90-A4ED-01 19 55175753 55175753 G A LILRB4 Missense_Mutation p.E158K 0.19 deleterious(0.03) probably_damaging(0.993) TCGA-90-A4ED-01 19 55176254 55176254 C T LILRB4 Silent p.S220S 0.35 TCGA-90-A4ED-01 19 55221616 55221616 C T AC098784.2 3'Flank 0.19 TCGA-90-A4ED-01 19 55224635 55224635 C T LILRP2 RNA 0.31 TCGA-90-A4ED-01 19 55359236 55359236 G A KIR3DL2 5'Flank 0.42 TCGA-90-A4ED-01 19 55396690 55396690 G A FCAR Silent p.V38V 0.29 TCGA-90-A4ED-01 19 55451598 55451598 C T NLRP7 Missense_Mutation p.D197N 0.27 deleterious(0.04) benign(0.243) TCGA-90-A4ED-01 19 55690410 55690410 G A SYT5 5'UTR 0.35 TCGA-90-A4ED-01 19 55690411 55690411 G A SYT5 5'UTR 0.35 TCGA-90-A4ED-01 19 55696963 55696963 G A PTPRH Missense_Mutation p.P990L 0.20 probably_damaging(0.919) TCGA-90-A4ED-01 19 56113650 56113650 C T ZNF524 Missense_Mutation p.P58S 0.44 tolerated(0.34) benign(0.002) TCGA-90-A4ED-01 19 56241254 56241254 G A NLRP9 Missense_Mutation p.S646F 0.23 deleterious(0) benign(0.139) TCGA-90-A4ED-01 19 56243384 56243384 C T NLRP9 Missense_Mutation p.D605N 0.45 deleterious(0.03) benign(0.098) TCGA-90-A4ED-01 19 56320467 56320467 C T NLRP11 Silent p.R503R 0.28 TCGA-90-A4ED-01 19 56369832 56369832 G A NLRP4 Missense_Mutation p.G358E 0.17 deleterious(0) possibly_damaging(0.882) TCGA-90-A4ED-01 19 56372790 56372790 C T NLRP4 Missense_Mutation p.S632F 0.23 deleterious(0) probably_damaging(0.977) TCGA-90-A4ED-01 19 56490841 56490841 G A NLRP8 Silent p.L986L 0.29 TCGA-90-A4ED-01 19 56896408 56896408 G A ZNF582 Silent p.N126N 0.32 TCGA-90-A4ED-01 19 56952566 56952566 G A ZNF667 Nonsense_Mutation p.R600* 0.27 TCGA-90-A4ED-01 19 57132935 57132935 G A ZNF71 Missense_Mutation p.D94N 0.16 tolerated(0.12) benign(0.012) TCGA-90-A4ED-01 19 57175846 57175846 G A ZNF835 Nonsense_Mutation p.Q241* 0.22 TCGA-90-A4ED-01 19 57286718 57286718 C T ZIM2 Missense_Mutation p.E308K 0.25 tolerated(0.14) possibly_damaging(0.857) TCGA-90-A4ED-01 19 57327109 57327109 G A PEG3 Missense_Mutation p.R901C 0.25 tolerated(0.17) possibly_damaging(0.462) TCGA-90-A4ED-01 19 57327241 57327241 C A PEG3 Nonsense_Mutation p.E857* 0.28 TCGA-90-A4ED-01 19 57330026 57330026 C T PEG3 Silent p.R238R 0.25 TCGA-90-A4ED-01 19 5759140 5759140 C T CATSPERD Missense_Mutation p.S471F 0.22 tolerated(0.45) benign(0.002) TCGA-90-A4ED-01 19 57646651 57646651 C T ZIM3 Missense_Mutation p.D352N 0.32 tolerated(0.51) probably_damaging(0.97) TCGA-90-A4ED-01 19 5776316 5776316 C T CATSPERD Missense_Mutation p.P696S 0.22 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 19 5776317 5776317 C T CATSPERD Missense_Mutation p.P696L 0.24 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 19 57984620 57984620 G A ZNF772 3'UTR 0.29 TCGA-90-A4ED-01 19 58419880 58419880 G A ZNF417 3'UTR 0.30 TCGA-90-A4ED-01 19 58421471 58421471 C T ZNF417 Missense_Mutation p.G59R 0.13 deleterious(0.04) benign(0.21) TCGA-90-A4ED-01 19 58437668 58437668 G A ZNF418 Silent p.S627S 0.26 TCGA-90-A4ED-01 19 58619296 58619296 G A ZSCAN18 Intron 0.12 TCGA-90-A4ED-01 19 58790459 58790459 G A ZNF8 Silent p.E4E 0.40 TCGA-90-A4ED-01 19 58967782 58967782 C T ZNF324B Missense_Mutation p.R491C 0.21 deleterious(0.02) benign(0.178) TCGA-90-A4ED-01 19 59068059 59068059 G A UBE2M Silent p.I114I 0.19 TCGA-90-A4ED-01 19 6312173 6312173 G A ACER1 Missense_Mutation p.L113F 0.19 tolerated(0.46) benign(0.114) TCGA-90-A4ED-01 19 6452419 6452419 G A SLC25A23 Silent p.I325I 0.20 TCGA-90-A4ED-01 19 6534954 6534954 C T TNFSF9 Silent p.V214V 0.45 TCGA-90-A4ED-01 19 6678196 6678196 C T C3 Missense_Mutation p.G1606D 0.18 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 19 6908704 6908704 C T EMR1 Missense_Mutation p.S348F 0.17 deleterious(0) possibly_damaging(0.684) TCGA-90-A4ED-01 19 6981207 6981207 C T EMR4P RNA 0.14 TCGA-90-A4ED-01 19 758207 758207 C T MISP Missense_Mutation p.P421S 0.31 tolerated(0.11) benign(0.297) TCGA-90-A4ED-01 19 758208 758208 C T MISP Missense_Mutation p.P421L 0.32 deleterious(0.05) benign(0.117) TCGA-90-A4ED-01 19 7918012 7918012 C G EVI5L Missense_Mutation p.P343R 0.20 deleterious(0) probably_damaging(0.94) TCGA-90-A4ED-01 19 8438879 8438879 G A ANGPTL4 3'UTR 0.31 TCGA-90-A4ED-01 19 8645785 8645785 C T ADAMTS10 Missense_Mutation p.G1102S 0.33 deleterious_low_confidence(0) probably_damaging(1) TCGA-90-A4ED-01 19 8651116 8651116 C T ADAMTS10 Silent p.V850V 0.22 TCGA-90-A4ED-01 19 8998737 8998737 C T MUC16 Missense_Mutation p.G13616R 0.17 possibly_damaging(0.619) TCGA-90-A4ED-01 19 9003602 9003602 C T MUC16 Silent p.R13346R 0.22 TCGA-90-A4ED-01 19 9021151 9021151 G A MUC16 Missense_Mutation p.T12391I 0.23 possibly_damaging(0.491) TCGA-90-A4ED-01 19 9059447 9059447 G A MUC16 Silent p.I9333I 0.36 TCGA-90-A4ED-01 19 9060642 9060642 G A MUC16 Missense_Mutation p.S8935L 0.29 unknown(0) TCGA-90-A4ED-01 19 9060692 9060692 C T MUC16 Silent p.E8918E 0.24 TCGA-90-A4ED-01 19 9064929 9064929 G A MUC16 Missense_Mutation p.S7506L 0.25 unknown(0) TCGA-90-A4ED-01 19 9065484 9065484 G A MUC16 Missense_Mutation p.S7321L 0.26 unknown(0) TCGA-90-A4ED-01 19 9073532 9073532 G A MUC16 Silent p.V4638V 0.38 TCGA-90-A4ED-01 19 9080473 9080473 C T MUC16 Silent p.E3186E 0.21 TCGA-90-A4ED-01 19 9085026 9085026 G A MUC16 Silent p.I2263I 0.18 TCGA-90-A4ED-01 19 9089240 9089240 G A MUC16 Silent p.L859L 0.31 TCGA-90-A4ED-01 19 9362441 9362441 C T OR7E24 Missense_Mutation p.S241F 0.27 deleterious(0.04) benign(0.077) TCGA-90-A4ED-01 19 9524241 9524241 G A ZNF266 Missense_Mutation p.H454Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 19 9578863 9578863 G A ZNF560 Silent p.L254L 0.32 TCGA-90-A4ED-01 1 100349718 100349718 G A AGL Missense_Mutation p.R784K 0.37 tolerated(0.36) benign(0.032) TCGA-90-A4ED-01 1 102269830 102269830 G A OLFM3 Silent p.T447T 0.33 TCGA-90-A4ED-01 1 104297197 104297197 G A AMY1C Missense_Mutation p.G319R 0.20 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 1 11008710 11008710 G A C1orf127 Silent p.P494P 0.45 TCGA-90-A4ED-01 1 110203828 110203828 C T GSTM4 Silent p.F203F 0.21 TCGA-90-A4ED-01 1 110255967 110255967 C T GSTM5 Intron 0.22 TCGA-90-A4ED-01 1 110257910 110257910 C T GSTM5 Intron 0.43 TCGA-90-A4ED-01 1 110738320 110738320 C T SLC6A17 Silent p.I535I 0.43 TCGA-90-A4ED-01 1 110765589 110765589 G A KCNC4 Missense_Mutation p.V228M 0.38 deleterious(0.01) possibly_damaging(0.708) TCGA-90-A4ED-01 1 111492546 111492546 G A LRIF1 Missense_Mutation p.S599F 0.27 deleterious(0.04) benign(0.071) TCGA-90-A4ED-01 1 111494144 111494144 G A LRIF1 Silent p.T454T 0.23 TCGA-90-A4ED-01 1 111826794 111826794 G A CHIAP2 RNA 0.35 TCGA-90-A4ED-01 1 112269799 112269799 T A FAM212B Nonsense_Mutation p.K229* 0.43 TCGA-90-A4ED-01 1 112305514 112305514 C T DDX20 Intron 0.30 TCGA-90-A4ED-01 1 112525097 112525097 G A KCND3 Silent p.F84F 0.26 TCGA-90-A4ED-01 1 113239078 113239078 C T MOV10 Missense_Mutation p.P635S 0.30 deleterious(0.01) possibly_damaging(0.729) TCGA-90-A4ED-01 1 113459878 113459878 G A SLC16A1 Missense_Mutation p.P384S 0.33 tolerated(0.3) benign(0.014) TCGA-90-A4ED-01 1 114092232 114092232 C T MAGI3 Missense_Mutation p.L138F 0.29 deleterious(0.01) probably_damaging(1) TCGA-90-A4ED-01 1 116311167 116311167 G A CASQ2 5'UTR 0.32 TCGA-90-A4ED-01 1 116380631 116380631 C T NHLH2 Silent p.L121L 0.23 TCGA-90-A4ED-01 1 119923333 119923333 G A HAO2 Intron 0.24 TCGA-90-A4ED-01 1 120471821 120471821 C T NOTCH2 Missense_Mutation p.E1224K 0.36 deleterious(0.03) benign(0.341) TCGA-90-A4ED-01 1 12343398 12343398 C T VPS13D Missense_Mutation p.R1747W 0.47 possibly_damaging(0.898) TCGA-90-A4ED-01 1 12785955 12785955 G A AADACL3 Missense_Mutation p.G349R 0.35 deleterious(0.02) benign(0.063) TCGA-90-A4ED-01 1 143912374 143912374 G A FAM72D 5'UTR 0.21 TCGA-90-A4ED-01 1 1447617 1447617 C T ATAD3A 5'UTR 0.54 TCGA-90-A4ED-01 1 144852422 144852422 G A PDE4DIP Missense_Mutation p.H2341Y 0.15 tolerated(0.31) benign(0.193) TCGA-90-A4ED-01 1 145296475 145296475 C T NBPF10 Missense_Mutation p.P133S 0.22 possibly_damaging(0.596) TCGA-90-A4ED-01 1 145460232 145460232 G A POLR3GL 5'UTR 0.48 TCGA-90-A4ED-01 1 145560087 145560087 C T ANKRD35 Silent p.I191I 0.39 TCGA-90-A4ED-01 1 148343727 148343727 G A NBPF20 Silent p.S120S 0.21 TCGA-90-A4ED-01 1 150444041 150444041 C T RPRD2 Silent p.L873L 0.26 TCGA-90-A4ED-01 1 150971881 150971881 G A FAM63A Silent p.F363F 0.34 TCGA-90-A4ED-01 1 151316949 151316949 G A RFX5 Silent p.I139I 0.44 TCGA-90-A4ED-01 1 151336995 151336995 G A SELENBP1 3'UTR 0.29 TCGA-90-A4ED-01 1 151492662 151492662 C T CGN Silent p.L298L 0.29 TCGA-90-A4ED-01 1 151665923 151665923 C T SNX27 Silent p.F514F 0.25 TCGA-90-A4ED-01 1 152187656 152187656 C T HRNR Missense_Mutation p.G2150E 0.05 unknown(0) TCGA-90-A4ED-01 1 152187670 152187670 C T HRNR Silent p.R2145R 0.03 TCGA-90-A4ED-01 1 152277111 152277111 C T FLG Silent p.Q3417Q 0.33 TCGA-90-A4ED-01 1 152278991 152278991 C T FLG Missense_Mutation p.G2791R 0.18 benign(0.429) TCGA-90-A4ED-01 1 152279804 152279804 C T FLG Missense_Mutation p.D2520N 0.34 possibly_damaging(0.53) TCGA-90-A4ED-01 1 152323986 152323986 C T FLG2 Silent p.Q2092Q 0.30 TCGA-90-A4ED-01 1 152328582 152328582 C T FLG2 Silent p.G560G 0.33 TCGA-90-A4ED-01 1 152538266 152538266 C T LCE3E 3'UTR 0.16 TCGA-90-A4ED-01 1 152636634 152636634 C T LCE2D Missense_Mutation p.P18L 0.32 deleterious_low_confidence(0.01) unknown(0) TCGA-90-A4ED-01 1 152777864 152777864 G A LCE1C Missense_Mutation p.P31S 0.51 tolerated_low_confidence(0.88) unknown(0) TCGA-90-A4ED-01 1 153313002 153313002 G A PGLYRP4 Missense_Mutation p.P227S 0.32 tolerated(0.38) benign(0.02) TCGA-90-A4ED-01 1 153659534 153659534 C T NPR1 Missense_Mutation p.R636W 0.35 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 1 153727177 153727177 C T INTS3 Missense_Mutation p.P307S 0.32 deleterious(0.02) benign(0.104) TCGA-90-A4ED-01 1 153735735 153735735 C T INTS3 Missense_Mutation p.P555S 0.31 deleterious(0.01) possibly_damaging(0.466) TCGA-90-A4ED-01 1 154557454 154557454 G A ADAR Missense_Mutation p.S1170F 0.29 deleterious(0.01) possibly_damaging(0.86) TCGA-90-A4ED-01 1 154575094 154575094 G A ADAR Silent p.S8S 0.26 TCGA-90-A4ED-01 1 155019719 155019719 C T DCST1 Missense_Mutation p.R515W 0.41 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 1 155292331 155292331 G A RUSC1 Nonsense_Mutation p.W256* 0.36 TCGA-90-A4ED-01 1 155292332 155292332 G A RUSC1 Nonsense_Mutation p.W256* 0.36 TCGA-90-A4ED-01 1 155451850 155451850 T C ASH1L Missense_Mutation p.I271V 0.34 tolerated_low_confidence(0.75) benign(0.003) TCGA-90-A4ED-01 1 155851301 155851301 C T SYT11 3'UTR 0.39 TCGA-90-A4ED-01 1 156235886 156235886 G A SMG5 Missense_Mutation p.S514L 0.30 deleterious(0) probably_damaging(0.922) TCGA-90-A4ED-01 1 156618649 156618649 C T BCAN Silent p.F353F 0.34 TCGA-90-A4ED-01 1 156618650 156618650 C T BCAN Nonsense_Mutation p.R354* 0.33 TCGA-90-A4ED-01 1 156640082 156640082 G A NES Missense_Mutation p.P1300S 0.26 tolerated(0.11) probably_damaging(0.936) TCGA-90-A4ED-01 1 156647041 156647041 C T NES Missense_Mutation p.G6R 0.20 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 1 157504668 157504668 G A FCRL5 Missense_Mutation p.P473S 0.31 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 1 157772440 157772440 C T FCRL1 Missense_Mutation p.D112N 0.45 tolerated(0.92) benign(0.009) TCGA-90-A4ED-01 1 158225137 158225137 G A CD1A Missense_Mutation p.E108K 0.38 tolerated(0.28) benign(0.011) TCGA-90-A4ED-01 1 158368942 158368942 G A OR10T2 Silent p.F105F 0.32 TCGA-90-A4ED-01 1 158435772 158435772 T A OR10K1 Missense_Mutation p.C141S 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-90-A4ED-01 1 158549062 158549062 G A OR10X1 Missense_Mutation p.H210Y 0.21 tolerated(0.44) benign(0.027) TCGA-90-A4ED-01 1 158576248 158576248 C T OR10Z1 Missense_Mutation p.T7I 0.41 deleterious(0) probably_damaging(0.996) TCGA-90-A4ED-01 1 158746951 158746951 C T OR6N2 Missense_Mutation p.E159K 0.25 deleterious(0.03) probably_damaging(0.968) TCGA-90-A4ED-01 1 158911938 158911938 C T PYHIN1 Missense_Mutation p.H251Y 0.31 tolerated(0.17) probably_damaging(0.946) TCGA-90-A4ED-01 1 159166240 159166240 C T CADM3 Missense_Mutation p.P294S 0.45 deleterious(0) probably_damaging(0.925) TCGA-90-A4ED-01 1 159284042 159284042 G A OR10J3 Silent p.I136I 0.33 TCGA-90-A4ED-01 1 159409725 159409725 C T OR10J1 Silent p.I59I 0.35 TCGA-90-A4ED-01 1 159778812 159778812 G A FCRL6 Silent p.L127L 0.28 TCGA-90-A4ED-01 1 159846368 159846368 C T CCDC19 Missense_Mutation p.D444N 0.26 tolerated(0.49) benign(0.014) TCGA-90-A4ED-01 1 15987363 15987363 C T RSC1A1 Missense_Mutation p.L334F 0.62 deleterious(0.04) possibly_damaging(0.897) TCGA-90-A4ED-01 1 159900109 159900109 G A IGSF9 Missense_Mutation p.P645L 0.27 tolerated(0.08) possibly_damaging(0.557) TCGA-90-A4ED-01 1 159901649 159901649 G A IGSF9 Missense_Mutation p.P439S 0.25 deleterious(0.02) probably_damaging(0.972) TCGA-90-A4ED-01 1 160001587 160001587 C T PIGM 5'UTR 0.26 TCGA-90-A4ED-01 1 160001588 160001588 C T PIGM 5'UTR 0.26 TCGA-90-A4ED-01 1 160098792 160098792 C T ATP1A2 Silent p.S413S 0.25 TCGA-90-A4ED-01 1 16069096 16069096 C T TMEM82 Silent p.L14L 0.44 TCGA-90-A4ED-01 1 160851906 160851906 C T ITLN1 Silent p.V82V 0.30 TCGA-90-A4ED-01 1 161654619 161654619 G A RPL31P11 RNA 0.30 TCGA-90-A4ED-01 1 162343917 162343917 G A C1orf111 Missense_Mutation p.S236F 0.04 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-90-A4ED-01 1 162469866 162469866 T C UHMK1 Silent p.C130C 0.31 TCGA-90-A4ED-01 1 162740183 162740183 C T DDR2 Missense_Mutation p.P462L 0.31 tolerated(0.15) benign(0.008) TCGA-90-A4ED-01 1 16373150 16373150 C T CLCNKB Missense_Mutation p.S117F 0.48 tolerated(0.36) benign(0.002) TCGA-90-A4ED-01 1 164790808 164790808 G A PBX1 Missense_Mutation p.G382E 0.30 deleterious(0.03) possibly_damaging(0.548) TCGA-90-A4ED-01 1 16748448 16748448 G A SPATA21 Missense_Mutation p.P18L 0.47 deleterious(0.01) benign(0.054) TCGA-90-A4ED-01 1 169388387 169388387 C T CCDC181 Missense_Mutation p.R360Q 0.28 tolerated(0.15) benign(0.182) TCGA-90-A4ED-01 1 169489852 169489852 G A F5 Silent p.D2033D 0.37 TCGA-90-A4ED-01 1 169923159 169923159 G A KIFAP3 Missense_Mutation p.P756S 0.29 tolerated(0.58) benign(0) TCGA-90-A4ED-01 1 17084472 17084472 G A MST1L RNA 0.09 TCGA-90-A4ED-01 1 171254613 171254613 C T FMO1 Missense_Mutation p.P510L 0.33 tolerated(0.19) benign(0.015) TCGA-90-A4ED-01 1 172501615 172501615 G A SUCO 5'Flank 0.48 TCGA-90-A4ED-01 1 172628308 172628308 C T FASLG 5'UTR 0.31 TCGA-90-A4ED-01 1 176564106 176564106 C T PAPPA2 Silent p.L456L 0.33 TCGA-90-A4ED-01 1 176564724 176564724 C T PAPPA2 Missense_Mutation p.P662S 0.29 deleterious(0.03) probably_damaging(0.928) TCGA-90-A4ED-01 1 176668295 176668295 C T PAPPA2 Missense_Mutation p.H936Y 0.32 tolerated(0.07) probably_damaging(0.959) TCGA-90-A4ED-01 1 176708826 176708826 T A PAPPA2 Missense_Mutation p.V1288D 0.30 tolerated(0.21) benign(0.004) TCGA-90-A4ED-01 1 177930751 177930751 G A SEC16B Missense_Mutation p.S254L 0.24 tolerated(0.15) benign(0.008) TCGA-90-A4ED-01 1 180805812 180805812 C T XPR1 Silent p.F487F 0.26 TCGA-90-A4ED-01 1 181452910 181452910 C T CACNA1E Silent p.A10A 0.21 TCGA-90-A4ED-01 1 183091288 183091288 C T LAMC1 Missense_Mutation p.S768F 0.32 deleterious(0) possibly_damaging(0.707) TCGA-90-A4ED-01 1 183881402 183881402 G A RGL1 Silent p.K618K 0.34 TCGA-90-A4ED-01 1 183885832 183885832 C T RGL1 Silent p.I702I 0.34 TCGA-90-A4ED-01 1 183938503 183938503 C T COLGALT2 Silent p.R244R 0.27 TCGA-90-A4ED-01 1 184675862 184675862 G A EDEM3 Silent p.I706I 0.24 TCGA-90-A4ED-01 1 185109346 185109346 C T TRMT1L Missense_Mutation p.G290R 0.24 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 1 185125942 185125942 G A TRMT1L 5'UTR 0.33 TCGA-90-A4ED-01 1 185151170 185151170 T G SWT1 Missense_Mutation p.D373E 0.23 tolerated(0.51) benign(0.025) TCGA-90-A4ED-01 1 185151171 185151171 G T SWT1 Missense_Mutation p.D374Y 0.23 deleterious(0) probably_damaging(0.974) TCGA-90-A4ED-01 1 185947024 185947024 G A HMCN1 Nonsense_Mutation p.W826* 0.31 TCGA-90-A4ED-01 1 186062623 186062623 C T HMCN1 Missense_Mutation p.P3340S 0.25 probably_damaging(0.993) TCGA-90-A4ED-01 1 186064617 186064617 G A HMCN1 Missense_Mutation p.G3513R 0.28 probably_damaging(0.95) TCGA-90-A4ED-01 1 190068227 190068227 G A BRINP3 Missense_Mutation p.L408F 0.27 deleterious(0) probably_damaging(0.997) TCGA-90-A4ED-01 1 19436679 19436679 G A UBR4 Missense_Mutation p.P4006S 0.53 probably_damaging(0.968) TCGA-90-A4ED-01 1 19503200 19503200 G A UBR4 Missense_Mutation p.P887S 0.43 benign(0.003) TCGA-90-A4ED-01 1 196716270 196716270 G A CFH Missense_Mutation p.E1175K 0.34 tolerated(0.17) benign(0.037) TCGA-90-A4ED-01 1 196748435 196748435 G A CFHR3 Missense_Mutation p.D68N 0.27 tolerated(0.58) probably_damaging(0.994) TCGA-90-A4ED-01 1 196748950 196748950 G A CFHR3 Missense_Mutation p.E93K 0.29 tolerated(0.23) possibly_damaging(0.68) TCGA-90-A4ED-01 1 196879474 196879474 G A CFHR4 Missense_Mutation p.R287K 0.19 tolerated(0.75) benign(0.01) TCGA-90-A4ED-01 1 197390908 197390908 G A CRB1 Nonsense_Mutation p.W650* 0.30 TCGA-90-A4ED-01 1 200017551 200017551 C T NR5A2 Missense_Mutation p.P239S 0.26 tolerated(0.08) benign(0.014) TCGA-90-A4ED-01 1 201061164 201061164 C T CACNA1S Silent p.L159L 0.41 TCGA-90-A4ED-01 1 201081364 201081364 G A CACNA1S Missense_Mutation p.T35I 0.31 deleterious(0) possibly_damaging(0.707) TCGA-90-A4ED-01 1 201182527 201182527 G A IGFN1 Missense_Mutation p.D2836N 0.30 possibly_damaging(0.738) TCGA-90-A4ED-01 1 201938692 201938692 C T TIMM17A 3'UTR 0.29 TCGA-90-A4ED-01 1 202932216 202932216 G A CYB5R1 Silent p.F241F 0.22 TCGA-90-A4ED-01 1 203014525 203014525 G A PPFIA4 Silent p.Q232Q 0.42 TCGA-90-A4ED-01 1 203014526 203014526 G A PPFIA4 Missense_Mutation p.E233K 0.42 deleterious(0.01) benign(0.436) TCGA-90-A4ED-01 1 203316607 203316607 G A FMOD Silent p.F264F 0.33 TCGA-90-A4ED-01 1 204587552 204587552 C T LRRN2 Silent p.R523R 0.38 TCGA-90-A4ED-01 1 205042933 205042933 C T CNTN2 3'UTR 0.24 TCGA-90-A4ED-01 1 206821096 206821096 C T DYRK3 Missense_Mutation p.P185S 0.39 tolerated(0.42) probably_damaging(0.985) TCGA-90-A4ED-01 1 207196216 207196216 G A C1orf116 Missense_Mutation p.P298L 0.36 deleterious(0.03) probably_damaging(0.971) TCGA-90-A4ED-01 1 207532888 207532888 C T CD55 Intron 0.31 TCGA-90-A4ED-01 1 207640150 207640150 C T CR2 Missense_Mutation p.S113F 0.38 tolerated(0.45) benign(0.005) TCGA-90-A4ED-01 1 208061160 208061160 C T CD34 Missense_Mutation p.E361K 0.38 deleterious(0) probably_damaging(0.989) TCGA-90-A4ED-01 1 210187060 210187060 G A SYT14 Silent p.K93K 0.27 TCGA-90-A4ED-01 1 210415615 210415615 C T SERTAD4 Missense_Mutation p.S335F 0.27 deleterious(0) possibly_damaging(0.823) TCGA-90-A4ED-01 1 210591521 210591521 C T HHAT Silent p.S237S 0.28 TCGA-90-A4ED-01 1 21306853 21306853 C T EIF4G3 Missense_Mutation p.G107E 0.48 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 1 214170304 214170304 C T PROX1 Silent p.S142S 0.26 TCGA-90-A4ED-01 1 214171301 214171301 T C PROX1 Missense_Mutation p.F475L 0.33 tolerated(0.34) benign(0.069) TCGA-90-A4ED-01 1 216591942 216591942 G A USH2A Missense_Mutation p.R189C 0.28 probably_damaging(0.953) TCGA-90-A4ED-01 1 217784321 217784321 G A GPATCH2 Missense_Mutation p.P310S 0.35 tolerated(0.89) benign(0.002) TCGA-90-A4ED-01 1 220809185 220809185 C T MARK1 Silent p.S429S 0.26 TCGA-90-A4ED-01 1 22186425 22186425 G A HSPG2 Silent p.S1695S 0.56 TCGA-90-A4ED-01 1 22186426 22186426 G A HSPG2 Missense_Mutation p.S1695F 0.56 probably_damaging(0.986) TCGA-90-A4ED-01 1 226564832 226564832 G A PARP1 Missense_Mutation p.P640S 0.31 deleterious(0) benign(0.052) TCGA-90-A4ED-01 1 226895569 226895569 G A ITPKB Intron 0.43 TCGA-90-A4ED-01 1 228109458 228109458 G A WNT9A Missense_Mutation p.P287S 0.21 tolerated(0.69) benign(0.183) TCGA-90-A4ED-01 1 2288980 2288980 G A MORN1 Silent p.P309P 0.46 TCGA-90-A4ED-01 1 229772777 229772777 C T URB2 Missense_Mutation p.S806F 0.34 tolerated(0.05) possibly_damaging(0.467) TCGA-90-A4ED-01 1 229772778 229772778 C T URB2 Silent p.S806S 0.34 TCGA-90-A4ED-01 1 230825806 230825806 C T COG2 Missense_Mutation p.P614L 0.39 deleterious(0) probably_damaging(0.982) TCGA-90-A4ED-01 1 230898434 230898434 C T CAPN9 Silent p.I146I 0.30 TCGA-90-A4ED-01 1 231125859 231125859 C T ARV1 Missense_Mutation p.H100Y 0.26 tolerated(0.12) probably_damaging(0.99) TCGA-90-A4ED-01 1 233314862 233314862 G A PCNXL2 Silent p.V1042V 0.26 TCGA-90-A4ED-01 1 23648072 23648072 G A HNRNPR Missense_Mutation p.P254S 0.40 deleterious(0) possibly_damaging(0.84) TCGA-90-A4ED-01 1 240286487 240286487 C T FMN2 Silent p.L542L 0.21 TCGA-90-A4ED-01 1 240370323 240370323 G A FMN2 Silent p.R737R 0.30 TCGA-90-A4ED-01 1 241799074 241799074 G A CHML 5'UTR 0.36 TCGA-90-A4ED-01 1 24201331 24201331 G A CNR2 Silent p.F259F 0.53 TCGA-90-A4ED-01 1 24400728 24400728 C T MYOM3 Missense_Mutation p.E964K 0.54 tolerated(0.47) benign(0.007) TCGA-90-A4ED-01 1 24406572 24406572 G A MYOM3 Silent p.F840F 0.52 TCGA-90-A4ED-01 1 245851020 245851020 G A KIF26B Missense_Mutation p.G1579R 0.30 tolerated(1) unknown(0) TCGA-90-A4ED-01 1 247263943 247263943 G A ZNF669 Silent p.S376S 0.34 TCGA-90-A4ED-01 1 247587301 247587301 G A NLRP3 Missense_Mutation p.E186K 0.46 tolerated(0.44) possibly_damaging(0.624) TCGA-90-A4ED-01 1 247751913 247751913 C T OR2G2 Silent p.L84L 0.31 TCGA-90-A4ED-01 1 247978248 247978248 C T OR14A16 Missense_Mutation p.E262K 0.32 tolerated(0.98) benign(0.004) TCGA-90-A4ED-01 1 248039273 248039273 G A TRIM58 Missense_Mutation p.D315N 0.31 tolerated(0.39) possibly_damaging(0.579) TCGA-90-A4ED-01 1 248059077 248059077 C T OR2W3 Silent p.L63L 0.27 TCGA-90-A4ED-01 1 248128689 248128689 G A OR2AK2 Missense_Mutation p.G19E 0.25 tolerated(0.33) benign(0.005) TCGA-90-A4ED-01 1 248343488 248343488 C T OR2M2 Silent p.S67S 0.30 TCGA-90-A4ED-01 1 248551248 248551248 C T OR2T6 Silent p.F113F 0.33 TCGA-90-A4ED-01 1 248790397 248790397 G A OR2T11 Silent p.L11L 0.25 TCGA-90-A4ED-01 1 248813850 248813850 G A OR2T27 Silent p.F112F 0.41 TCGA-90-A4ED-01 1 248814015 248814015 G A OR2T27 Silent p.T57T 0.20 TCGA-90-A4ED-01 1 248845489 248845489 C T OR14I1 Silent p.G39G 0.26 TCGA-90-A4ED-01 1 249107274 249107274 G A SH3BP5L Nonsense_Mutation p.Q209* 0.17 TCGA-90-A4ED-01 1 26288502 26288502 G A PAFAH2 Missense_Mutation p.P386L 0.44 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 1 26624552 26624552 G A UBXN11 Silent p.V67V 0.60 TCGA-90-A4ED-01 1 27101119 27101119 C T ARID1A Silent p.P1467P 0.45 TCGA-90-A4ED-01 1 27226937 27226937 G A GPATCH3 5'UTR 0.41 TCGA-90-A4ED-01 1 27434218 27434218 G A SLC9A1 Silent p.S401S 0.30 TCGA-90-A4ED-01 1 28159278 28159278 C T PPP1R8 Missense_Mutation p.P23L 0.49 deleterious(0) probably_damaging(0.996) TCGA-90-A4ED-01 1 28159279 28159279 C T PPP1R8 Silent p.P23P 0.51 TCGA-90-A4ED-01 1 3328320 3328320 C T PRDM16 Missense_Mutation p.P520L 0.44 deleterious(0) probably_damaging(0.98) TCGA-90-A4ED-01 1 3328409 3328409 C T PRDM16 Missense_Mutation p.P550S 0.49 deleterious(0.04) probably_damaging(0.994) TCGA-90-A4ED-01 1 33291810 33291810 C T S100PBP Missense_Mutation p.S37F 0.42 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 1 33832906 33832906 G A PHC2 Missense_Mutation p.P263S 0.40 tolerated(0.48) benign(0.021) TCGA-90-A4ED-01 1 33959935 33959935 G T ZSCAN20 Missense_Mutation p.G664V 0.50 deleterious(0.03) possibly_damaging(0.556) TCGA-90-A4ED-01 1 34329876 34329876 G A HMGB4 Silent p.K28K 0.42 TCGA-90-A4ED-01 1 36181652 36181652 G A C1orf216 Missense_Mutation p.P91S 0.42 tolerated(0.54) benign(0.44) TCGA-90-A4ED-01 1 36383298 36383298 C T AGO1 Silent p.T711T 0.24 TCGA-90-A4ED-01 1 38005920 38005920 G A SNIP1 Missense_Mutation p.P255L 0.37 deleterious(0) probably_damaging(0.969) TCGA-90-A4ED-01 1 38355359 38355359 G A INPP5B Missense_Mutation p.R223C 0.25 deleterious(0) probably_damaging(0.95) TCGA-90-A4ED-01 1 38397507 38397507 C T INPP5B Intron 0.47 TCGA-90-A4ED-01 1 39876537 39876537 C T KIAA0754 Silent p.S64S 0.31 TCGA-90-A4ED-01 1 40562898 40562898 C T PPT1 Missense_Mutation p.G5S 0.35 tolerated_low_confidence(0.92) benign(0.001) TCGA-90-A4ED-01 1 40776799 40776799 C T COL9A2 Missense_Mutation p.G199E 0.19 deleterious(0) probably_damaging(0.982) TCGA-90-A4ED-01 1 41453080 41453080 T G CTPS1 Missense_Mutation p.V125G 0.32 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 1 41990582 41990582 C T HIVEP3 Splice_Site p.X1736_splice 0.34 TCGA-90-A4ED-01 1 43232701 43232701 C T LEPRE1 5'Flank 0.30 TCGA-90-A4ED-01 1 43232702 43232702 C T LEPRE1 5'Flank 0.30 TCGA-90-A4ED-01 1 43830442 43830442 G A ELOVL1 Silent p.F114F 0.27 TCGA-90-A4ED-01 1 43851868 43851868 G A MED8 Missense_Mutation p.P175S 0.24 tolerated(0.08) possibly_damaging(0.815) TCGA-90-A4ED-01 1 43855478 43855478 C T MED8 5'UTR 0.27 TCGA-90-A4ED-01 1 43898762 43898762 C T SZT2 Missense_Mutation p.P1845L 0.27 tolerated_low_confidence(0.22) benign(0.05) TCGA-90-A4ED-01 1 43900962 43900962 C T SZT2 Missense_Mutation p.P1942L 0.37 tolerated(0.79) benign(0.001) TCGA-90-A4ED-01 1 44360052 44360052 C T ST3GAL3 Intron 0.37 TCGA-90-A4ED-01 1 45289015 45289015 G A PTCH2 Missense_Mutation p.H1053Y 0.28 tolerated(0.24) benign(0.015) TCGA-90-A4ED-01 1 45296643 45296643 G A PTCH2 Silent p.S230S 0.34 TCGA-90-A4ED-01 1 45792932 45792932 G A HPDL Missense_Mutation p.E38K 0.33 tolerated(0.64) probably_damaging(0.997) TCGA-90-A4ED-01 1 46463467 46463467 C T MAST2 Missense_Mutation p.R222C 0.27 deleterious_low_confidence(0.02) probably_damaging(0.969) TCGA-90-A4ED-01 1 46646797 46646797 C T TSPAN1 Silent p.F6F 0.37 TCGA-90-A4ED-01 1 47399654 47399654 G A CYP4A11 Missense_Mutation p.P396S 0.29 deleterious(0.03) possibly_damaging(0.571) TCGA-90-A4ED-01 1 47765768 47765768 G A STIL Silent p.S170S 0.30 TCGA-90-A4ED-01 1 48701528 48701528 G A SLC5A9 Silent p.E448E 0.24 TCGA-90-A4ED-01 1 48864974 48864974 G A SPATA6 Intron 0.29 TCGA-90-A4ED-01 1 53544654 53544654 C T PODN Missense_Mutation p.A539V 0.33 deleterious(0.04) possibly_damaging(0.882) TCGA-90-A4ED-01 1 53580435 53580435 G A SLC1A7 Silent p.L142L 0.21 TCGA-90-A4ED-01 1 54476054 54476054 G A LDLRAD1 Missense_Mutation p.L124F 0.22 deleterious(0) probably_damaging(0.929) TCGA-90-A4ED-01 1 54665943 54665943 G A MRPL37 Silent p.R9R 0.41 TCGA-90-A4ED-01 1 55277538 55277538 G A C1orf177 Nonsense_Mutation p.W184* 0.29 TCGA-90-A4ED-01 1 55457874 55457874 C T TMEM61 3'UTR 0.43 TCGA-90-A4ED-01 1 57383434 57383434 C T C8A 3'UTR 0.28 TCGA-90-A4ED-01 1 59042357 59042357 G T TACSTD2 Missense_Mutation p.L158M 0.33 tolerated(0.15) possibly_damaging(0.54) TCGA-90-A4ED-01 1 6166695 6166695 C T CHD5 Missense_Mutation p.G1908E 0.62 tolerated(0.28) possibly_damaging(0.834) TCGA-90-A4ED-01 1 6166696 6166696 C T CHD5 Missense_Mutation p.G1908R 0.62 tolerated(0.1) possibly_damaging(0.898) TCGA-90-A4ED-01 1 64608176 64608176 C T ROR1 Silent p.S339S 0.26 TCGA-90-A4ED-01 1 64671379 64671379 G A UBE2U Missense_Mutation p.G42S 0.26 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 1 67340604 67340604 C T WDR78 Silent p.R220R 0.23 TCGA-90-A4ED-01 1 67340605 67340605 C T WDR78 Missense_Mutation p.R220K 0.23 tolerated(0.27) benign(0.008) TCGA-90-A4ED-01 1 70385349 70385349 G A LRRC7 Intron 0.32 TCGA-90-A4ED-01 1 70397239 70397239 G A LRRC7 Missense_Mutation p.E195K 0.41 deleterious(0) probably_damaging(0.98) TCGA-90-A4ED-01 1 70494040 70494040 G A LRRC7 Missense_Mutation p.E623K 0.32 deleterious(0.01) possibly_damaging(0.872) TCGA-90-A4ED-01 1 70504974 70504974 C T LRRC7 Missense_Mutation p.S1118F 0.36 deleterious(0) probably_damaging(0.996) TCGA-90-A4ED-01 1 71437308 71437308 G A PTGER3 Intron 0.34 TCGA-90-A4ED-01 1 74833599 74833599 C T FPGT-TNNI3K Silent p.S538S 0.24 TCGA-90-A4ED-01 1 74954882 74954882 G A TNNI3K Missense_Mutation p.E812K 0.27 tolerated(0.26) benign(0.162) TCGA-90-A4ED-01 1 75172111 75172111 G A CRYZ Nonsense_Mutation p.Q287* 0.22 TCGA-90-A4ED-01 1 75685496 75685496 G A SLC44A5 Silent p.V389V 0.40 TCGA-90-A4ED-01 1 76276419 76276419 T C MSH4 Missense_Mutation p.I209T 0.34 deleterious(0) probably_damaging(0.93) TCGA-90-A4ED-01 1 77094349 77094349 G A ST6GALNAC3 Missense_Mutation p.G259E 0.29 probably_damaging(0.95) TCGA-90-A4ED-01 1 77094528 77094528 G A ST6GALNAC3 3'UTR 0.28 TCGA-90-A4ED-01 1 79093867 79093867 G A IFI44L Silent p.K89K 0.31 TCGA-90-A4ED-01 1 8421359 8421359 G A RERE Silent p.A736A 0.48 TCGA-90-A4ED-01 1 85279567 85279567 T A LPAR3 Missense_Mutation p.I342F 0.24 tolerated(0.71) benign(0.049) TCGA-90-A4ED-01 1 89434428 89434428 G A CCBL2 Silent p.S76S 0.29 TCGA-90-A4ED-01 1 89449617 89449617 G A RBMXL1 5'UTR 0.19 TCGA-90-A4ED-01 1 89524593 89524593 C T GBP1 Missense_Mutation p.D188N 0.28 deleterious(0.02) benign(0.104) TCGA-90-A4ED-01 1 91404744 91404744 G A ZNF644 Missense_Mutation p.H723Y 0.26 tolerated(0.34) possibly_damaging(0.834) TCGA-90-A4ED-01 1 99470051 99470051 G T LPPR5 Missense_Mutation p.D59E 0.32 tolerated(1) benign(0.001) TCGA-90-A4ED-01 20 11904086 11904086 C T BTBD3 Silent p.S447S 0.36 TCGA-90-A4ED-01 20 1592145 1592145 C T SIRPB1 Intron 0.54 TCGA-90-A4ED-01 20 17462544 17462544 G A PCSK2 Silent p.G582G 0.32 TCGA-90-A4ED-01 20 17489555 17489555 C T BFSP1 Silent p.Q238Q 0.19 TCGA-90-A4ED-01 20 19981550 19981550 G A RIN2 Silent p.Q935Q 0.30 TCGA-90-A4ED-01 20 20621417 20621417 G A RALGAPA2 Missense_Mutation p.P160S 0.30 tolerated(0.21) possibly_damaging(0.798) TCGA-90-A4ED-01 20 23065110 23065110 C T CD93 Missense_Mutation p.D574N 0.36 tolerated(0.31) benign(0.003) TCGA-90-A4ED-01 20 23065326 23065326 G A CD93 Missense_Mutation p.P502S 0.29 tolerated(0.38) benign(0.018) TCGA-90-A4ED-01 20 23473604 23473604 C T CST8 Missense_Mutation p.L81F 0.31 tolerated(0.12) benign(0.159) TCGA-90-A4ED-01 20 2464480 2464480 G A ZNF343 Missense_Mutation p.S376F 0.30 deleterious(0.01) probably_damaging(0.992) TCGA-90-A4ED-01 20 2844715 2844715 G A VPS16 Missense_Mutation p.E533K 0.30 tolerated(0.07) probably_damaging(0.934) TCGA-90-A4ED-01 20 30671796 30671796 C T HCK Missense_Mutation p.S211F 0.34 deleterious(0) possibly_damaging(0.709) TCGA-90-A4ED-01 20 30674428 30674428 C T HCK Intron 0.24 TCGA-90-A4ED-01 20 3129654 3129654 G A FASTKD5 Silent p.A21A 0.30 TCGA-90-A4ED-01 20 3146827 3146827 C T LZTS3 Silent p.G213G 0.29 TCGA-90-A4ED-01 20 31573551 31573551 G A SUN5 Silent p.F296F 0.25 TCGA-90-A4ED-01 20 31625416 31625416 G A BPIFB6 Missense_Mutation p.G240R 0.37 tolerated(0.36) benign(0.01) TCGA-90-A4ED-01 20 31672707 31672707 C T BPIFB4 Silent p.I229I 0.44 TCGA-90-A4ED-01 20 31695576 31695576 C T BPIFB4 Missense_Mutation p.P591S 0.28 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 20 31757059 31757059 G A BPIFA2 Silent p.L36L 0.29 TCGA-90-A4ED-01 20 32664948 32664948 C T RALY Missense_Mutation p.P258L 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.616) TCGA-90-A4ED-01 20 33338193 33338193 G A NCOA6 Missense_Mutation p.P602L 0.34 possibly_damaging(0.893) TCGA-90-A4ED-01 20 33338194 33338194 G A NCOA6 Missense_Mutation p.P602S 0.34 benign(0.178) TCGA-90-A4ED-01 20 33451242 33451242 G A GGT7 Silent p.F93F 0.33 TCGA-90-A4ED-01 20 33588224 33588224 G A MYH7B Missense_Mutation p.G1679D 0.36 benign(0.228) TCGA-90-A4ED-01 20 33894577 33894577 G A UQCC1 Silent p.I219I 0.35 TCGA-90-A4ED-01 20 34057821 34057821 C T CEP250 Intron 0.26 TCGA-90-A4ED-01 20 34089790 34089790 C T CEP250 Silent p.A1339A 0.28 TCGA-90-A4ED-01 20 34089791 34089791 C T CEP250 Nonsense_Mutation p.Q1340* 0.27 TCGA-90-A4ED-01 20 34785927 34785927 C T EPB41L1 Silent p.S544S 0.34 TCGA-90-A4ED-01 20 35269675 35269675 C T SLA2 Missense_Mutation p.G22S 0.33 tolerated(0.63) benign(0.2) TCGA-90-A4ED-01 20 3553590 3553590 C T ATRN Missense_Mutation p.S695F 0.41 tolerated(0.09) benign(0.067) TCGA-90-A4ED-01 20 36012653 36012653 C T SRC Missense_Mutation p.P33S 0.39 tolerated(0.12) benign(0.001) TCGA-90-A4ED-01 20 36854102 36854102 G A KIAA1755 Missense_Mutation p.P712S 0.26 deleterious(0) probably_damaging(0.993) TCGA-90-A4ED-01 20 36869190 36869190 C T KIAA1755 Missense_Mutation p.G448E 0.31 tolerated(0.26) benign(0.367) TCGA-90-A4ED-01 20 37182646 37182646 C T RALGAPB Missense_Mutation p.P1100L 0.30 tolerated(0.12) benign(0.283) TCGA-90-A4ED-01 20 37524334 37524334 G A PPP1R16B Missense_Mutation p.V150M 0.22 deleterious(0.01) probably_damaging(1) TCGA-90-A4ED-01 20 3781951 3781951 C T CDC25B Silent p.A252A 0.28 TCGA-90-A4ED-01 20 3781952 3781952 C T CDC25B Silent p.L253L 0.28 TCGA-90-A4ED-01 20 398205 398205 C T RBCK1 Missense_Mutation p.T68I 0.35 deleterious(0.02) benign(0.028) TCGA-90-A4ED-01 20 398206 398206 C T RBCK1 Silent p.T68T 0.35 TCGA-90-A4ED-01 20 42252667 42252667 C T IFT52 Missense_Mutation p.S302F 0.31 tolerated(0.38) benign(0.058) TCGA-90-A4ED-01 20 42331482 42331482 C T MYBL2 Missense_Mutation p.S435F 0.36 deleterious(0.01) probably_damaging(0.971) TCGA-90-A4ED-01 20 42893133 42893133 G A GDAP1L1 Missense_Mutation p.G232R 0.32 tolerated(0.45) possibly_damaging(0.493) TCGA-90-A4ED-01 20 43057001 43057001 C T HNF4A Missense_Mutation p.H386Y 0.29 tolerated(0.53) possibly_damaging(0.529) TCGA-90-A4ED-01 20 43703752 43703752 C T STK4 Nonsense_Mutation p.Q467* 0.37 TCGA-90-A4ED-01 20 44003998 44003998 C T TP53TG5 Missense_Mutation p.R150Q 0.36 tolerated(1) benign(0.002) TCGA-90-A4ED-01 20 44569769 44569769 C T PCIF1 Missense_Mutation p.P199L 0.34 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 20 44671843 44671843 G A SLC12A5 Missense_Mutation p.G396E 0.34 deleterious(0.03) benign(0.019) TCGA-90-A4ED-01 20 46307464 46307464 C T SULF2 Silent p.G383G 0.35 TCGA-90-A4ED-01 20 47265869 47265869 C T PREX1 Missense_Mutation p.E1092K 0.30 deleterious(0.04) probably_damaging(0.999) TCGA-90-A4ED-01 20 49575365 49575365 C T MOCS3 5'UTR 0.44 TCGA-90-A4ED-01 20 50140430 50140430 G A NFATC2 Missense_Mutation p.P117L 0.31 deleterious(0) possibly_damaging(0.852) TCGA-90-A4ED-01 20 56227297 56227297 C T PMEPA1 Missense_Mutation p.E226K 0.29 deleterious(0) possibly_damaging(0.858) TCGA-90-A4ED-01 20 57766713 57766713 C T ZNF831 Silent p.L213L 0.32 TCGA-90-A4ED-01 20 57829658 57829658 C T ZNF831 Missense_Mutation p.P1632S 0.25 deleterious(0.01) possibly_damaging(0.614) TCGA-90-A4ED-01 20 57829659 57829659 C T ZNF831 Missense_Mutation p.P1632L 0.24 deleterious(0.01) possibly_damaging(0.693) TCGA-90-A4ED-01 20 58443935 58443935 C T SYCP2 Missense_Mutation p.E1263K 0.26 tolerated(0.31) possibly_damaging(0.783) TCGA-90-A4ED-01 20 60791785 60791785 C T HRH3 Silent p.L205L 0.24 TCGA-90-A4ED-01 20 61143370 61143370 G A C20orf166 5'Flank 0.21 TCGA-90-A4ED-01 20 61340837 61340837 C T NTSR1 Missense_Mutation p.S93L 0.45 deleterious(0.04) possibly_damaging(0.795) TCGA-90-A4ED-01 20 61522302 61522302 C T DIDO1 Intron 0.27 TCGA-90-A4ED-01 20 61941863 61941863 G A COL20A1 Splice_Site p.X465_splice 0.29 TCGA-90-A4ED-01 20 62198992 62198992 G A HELZ2 Intron 0.21 TCGA-90-A4ED-01 20 62517376 62517376 C T TPD52L2 Missense_Mutation p.P162S 0.41 tolerated(0.42) benign(0.012) TCGA-90-A4ED-01 20 744531 744531 G A SLC52A3 Silent p.S228S 0.25 TCGA-90-A4ED-01 20 9360721 9360721 G A PLCB4 Silent p.L255L 0.37 TCGA-90-A4ED-01 20 9561038 9561038 C T PAK7 Silent p.E248E 0.31 TCGA-90-A4ED-01 20 9624869 9624869 G A PAK7 Silent p.P36P 0.36 TCGA-90-A4ED-01 21 10906979 10906979 G A TPTE Missense_Mutation p.P528S 0.08 tolerated(0.74) benign(0.03) TCGA-90-A4ED-01 21 10942745 10942745 C T TPTE Silent p.R232R 0.07 TCGA-90-A4ED-01 21 10944671 10944671 G A TPTE Missense_Mutation p.P188L 0.05 deleterious(0) probably_damaging(0.975) TCGA-90-A4ED-01 21 10951270 10951270 C T TPTE Missense_Mutation p.E148K 0.21 tolerated(0.08) benign(0.34) TCGA-90-A4ED-01 21 11039178 11039178 G A BAGE2 RNA 0.05 TCGA-90-A4ED-01 21 22707867 22707867 A G NCAM2 Silent p.K260K 0.35 TCGA-90-A4ED-01 21 22707901 22707901 A T NCAM2 Missense_Mutation p.I272F 0.35 tolerated(0.05) benign(0.001) TCGA-90-A4ED-01 21 22910222 22910222 G A NCAM2 Missense_Mutation p.E820K 0.20 deleterious(0.02) probably_damaging(0.993) TCGA-90-A4ED-01 21 30365209 30365209 G A LTN1 Missense_Mutation p.S19F 0.25 deleterious_low_confidence(0.03) unknown(0) TCGA-90-A4ED-01 21 30421169 30421169 T C USP16 Missense_Mutation p.F700S 0.37 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 21 31655012 31655012 G A KRTAP24-1 Missense_Mutation p.T80I 0.32 tolerated(0.09) benign(0.293) TCGA-90-A4ED-01 21 31768658 31768658 C T KRTAP13-1 Missense_Mutation p.T85I 0.21 tolerated(0.19) benign(0.208) TCGA-90-A4ED-01 21 31768659 31768659 C T KRTAP13-1 Silent p.T85T 0.21 TCGA-90-A4ED-01 21 31874363 31874363 C T KRTAP19-5 Missense_Mutation p.G16R 0.28 deleterious_low_confidence(0) unknown(0) TCGA-90-A4ED-01 21 34951792 34951792 A C DONSON Missense_Mutation p.I476S 0.28 deleterious(0) possibly_damaging(0.791) TCGA-90-A4ED-01 21 35821550 35821550 G A KCNE1 Missense_Mutation p.S128F 0.29 deleterious(0) probably_damaging(0.927) TCGA-90-A4ED-01 21 38600662 38600662 G A DSCR3 Missense_Mutation p.P174S 0.27 tolerated(0.08) probably_damaging(0.941) TCGA-90-A4ED-01 21 39086812 39086812 C T KCNJ6 Silent p.G216G 0.22 TCGA-90-A4ED-01 21 39755324 39755324 T C ERG 3'UTR 0.56 TCGA-90-A4ED-01 21 40190426 40190426 C T ETS2 Missense_Mutation p.P223S 0.26 tolerated(0.14) benign(0.002) TCGA-90-A4ED-01 21 41496214 41496214 C T DSCAM Missense_Mutation p.A1202T 0.24 tolerated(0.14) benign(0.057) TCGA-90-A4ED-01 21 41514530 41514530 G A DSCAM Missense_Mutation p.L1121F 0.35 deleterious(0) probably_damaging(0.974) TCGA-90-A4ED-01 21 41514531 41514531 A T DSCAM Silent p.I1120I 0.35 TCGA-90-A4ED-01 21 43529772 43529772 G A UMODL1 Silent p.R540R 0.30 TCGA-90-A4ED-01 21 43809115 43809115 G A TMPRSS3 Missense_Mutation p.S82F 0.24 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 21 43999848 43999848 C T SLC37A1 Silent p.F508F 0.21 TCGA-90-A4ED-01 21 44478293 44478293 C T CBS Missense_Mutation p.D477N 0.20 deleterious(0.04) benign(0.322) TCGA-90-A4ED-01 21 45379580 45379580 C T AGPAT3 Silent p.F6F 0.24 TCGA-90-A4ED-01 21 46330327 46330327 C T ITGB2 Intron 0.37 TCGA-90-A4ED-01 21 46624539 46624539 C T ADARB1 Silent p.I585I 0.19 TCGA-90-A4ED-01 21 46640823 46640823 C T ADARB1 Missense_Mutation p.S647F 0.31 deleterious(0.02) benign(0.329) TCGA-90-A4ED-01 21 47953454 47953454 G A DIP2A Silent p.Q441Q 0.37 TCGA-90-A4ED-01 22 16449127 16449127 G A OR11H1 Silent p.F226F 0.27 TCGA-90-A4ED-01 22 17072444 17072444 G A CCT8L2 Missense_Mutation p.P333S 0.25 deleterious(0.01) possibly_damaging(0.889) TCGA-90-A4ED-01 22 17445659 17445659 G A GAB4 Silent p.F491F 0.31 TCGA-90-A4ED-01 22 18171907 18171907 C T BCL2L13 Nonsense_Mutation p.Q129* 0.22 TCGA-90-A4ED-01 22 18347529 18347529 G A MICAL3 Intron 0.20 TCGA-90-A4ED-01 22 19419021 19419021 G A HIRA 5'UTR 0.38 TCGA-90-A4ED-01 22 19951771 19951771 C T COMT Silent p.V188V 0.33 TCGA-90-A4ED-01 22 20729831 20729831 C T USP41 Missense_Mutation p.A117T 0.32 tolerated(0.1) probably_damaging(0.99) TCGA-90-A4ED-01 22 20760020 20760020 C T ZNF74 Missense_Mutation p.P233S 0.29 tolerated(1) benign(0.005) TCGA-90-A4ED-01 22 21322147 21322147 G A AIFM3 5'UTR 0.21 TCGA-90-A4ED-01 22 21384560 21384560 G A SLC7A4 Nonsense_Mutation p.Q355* 0.31 TCGA-90-A4ED-01 22 21384561 21384561 G A SLC7A4 Silent p.F354F 0.30 TCGA-90-A4ED-01 22 21385910 21385910 C T SLC7A4 Silent p.K64K 0.30 TCGA-90-A4ED-01 22 22599686 22599686 G A VPREB1 Silent p.E125E 0.24 TCGA-90-A4ED-01 22 23401852 23401852 C T RTDR1 Missense_Mutation p.E279K 0.29 tolerated(0.9) benign(0.026) TCGA-90-A4ED-01 22 24583361 24583361 G A SUSD2 Missense_Mutation p.G612R 0.31 deleterious(0) probably_damaging(0.971) TCGA-90-A4ED-01 22 25145674 25145674 A C PIWIL3 Missense_Mutation p.L401R 0.22 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 22 25243755 25243755 C T SGSM1 Silent p.I98I 0.24 TCGA-90-A4ED-01 22 26228911 26228911 C T MYO18B Missense_Mutation p.P1003S 0.22 tolerated(0.07) possibly_damaging(0.775) TCGA-90-A4ED-01 22 26423026 26423026 G A MYO18B Silent p.G2362G 0.25 TCGA-90-A4ED-01 22 29695312 29695312 C T EWSR1 Missense_Mutation p.P562S 0.35 tolerated_low_confidence(0.12) unknown(0) TCGA-90-A4ED-01 22 29835110 29835110 G A RFPL1 Silent p.L110L 0.27 TCGA-90-A4ED-01 22 30639723 30639723 C T LIF Missense_Mutation p.D176N 0.27 tolerated(0.48) probably_damaging(0.956) TCGA-90-A4ED-01 22 30640882 30640882 C T LIF Silent p.G20G 0.32 TCGA-90-A4ED-01 22 36537548 36537548 G A APOL3 Silent p.A303A 0.28 TCGA-90-A4ED-01 22 36714350 36714350 G A MYH9 Missense_Mutation p.L377F 0.27 probably_damaging(0.993) TCGA-90-A4ED-01 22 36894110 36894110 A C FOXRED2 Missense_Mutation p.V437G 0.23 deleterious(0) benign(0.239) TCGA-90-A4ED-01 22 37407314 37407314 G A TST Silent p.F216F 0.30 TCGA-90-A4ED-01 22 37709499 37709499 C T CYTH4 Missense_Mutation p.P378S 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-90-A4ED-01 22 38119891 38119891 C T TRIOBP Missense_Mutation p.P443L 0.27 deleterious_low_confidence(0.02) possibly_damaging(0.713) TCGA-90-A4ED-01 22 38121032 38121032 C T TRIOBP Silent p.I823I 0.31 TCGA-90-A4ED-01 22 38323594 38323594 C T MICALL1 Missense_Mutation p.P548S 0.29 tolerated(0.18) benign(0.156) TCGA-90-A4ED-01 22 38323595 38323595 C T MICALL1 Missense_Mutation p.P548L 0.30 deleterious(0.01) benign(0.055) TCGA-90-A4ED-01 22 39077956 39077956 C T TOMM22 5'UTR 0.43 TCGA-90-A4ED-01 22 39822772 39822772 C T TAB1 Missense_Mutation p.A329V 0.24 deleterious(0) probably_damaging(0.911) TCGA-90-A4ED-01 22 40661483 40661483 C T TNRC6B Nonsense_Mutation p.R417* 0.27 TCGA-90-A4ED-01 22 40819599 40819599 G A MKL1 Missense_Mutation p.P190S 0.27 tolerated(0.11) benign(0.09) TCGA-90-A4ED-01 22 41979976 41979976 G A PMM1 Missense_Mutation p.S154F 0.22 tolerated(0.7) benign(0.041) TCGA-90-A4ED-01 22 42159277 42159277 C T MEI1 Silent p.S740S 0.27 TCGA-90-A4ED-01 22 42266929 42266929 C T SREBF2 Missense_Mutation p.L253F 0.25 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 22 42910311 42910311 C T RRP7A Splice_Site p.X187_splice 0.39 TCGA-90-A4ED-01 22 42999146 42999146 A G POLDIP3 Missense_Mutation p.V27A 0.20 tolerated(0.43) benign(0.001) TCGA-90-A4ED-01 22 44602376 44602376 C T PARVG 3'UTR 0.47 TCGA-90-A4ED-01 22 44967272 44967272 G A LINC00207 RNA 0.31 TCGA-90-A4ED-01 22 45312460 45312460 C T PHF21B Silent p.R88R 0.29 TCGA-90-A4ED-01 22 46656018 46656018 G T PKDREJ Missense_Mutation p.Q1068K 0.39 tolerated(0.05) possibly_damaging(0.656) TCGA-90-A4ED-01 22 46726041 46726041 C T GTSE1 3'UTR 0.12 TCGA-90-A4ED-01 22 47569329 47569329 T G TBC1D22A 3'UTR 0.16 TCGA-90-A4ED-01 22 50470273 50470273 C T TTLL8 Missense_Mutation p.D533N 0.16 tolerated(0.08) probably_damaging(0.966) TCGA-90-A4ED-01 22 50488613 50488613 C T TTLL8 Missense_Mutation p.G75S 0.67 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 22 50500033 50500033 G A MLC1 Silent p.V371V 0.22 TCGA-90-A4ED-01 22 50719207 50719207 G A PLXNB2 Missense_Mutation p.S1320F 0.42 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 22 50757296 50757296 G A DENND6B Missense_Mutation p.S80F 0.21 deleterious(0) possibly_damaging(0.9) TCGA-90-A4ED-01 22 50944116 50944116 C T LMF2 Silent p.K301K 0.20 TCGA-90-A4ED-01 22 51015379 51015379 G A CPT1B Silent p.F122F 0.52 TCGA-90-A4ED-01 2 101098749 101098749 G A NMS Missense_Mutation p.G142E 0.23 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 2 101607259 101607259 C T NPAS2 Missense_Mutation p.P679L 0.08 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 2 107052695 107052695 T G RGPD3 Missense_Mutation p.N548H 0.21 deleterious(0) benign(0.19) TCGA-90-A4ED-01 2 107449037 107449037 G A ST6GAL2 Missense_Mutation p.S376F 0.36 probably_damaging(0.943) TCGA-90-A4ED-01 2 108625101 108625101 T C SLC5A7 Missense_Mutation p.F359S 0.32 deleterious(0) probably_damaging(0.993) TCGA-90-A4ED-01 2 108872050 108872050 C T SULT1C3 Missense_Mutation p.P141L 0.28 deleterious(0) benign(0.27) TCGA-90-A4ED-01 2 109111759 109111759 C T GCC2 Missense_Mutation p.S1487F 0.29 deleterious(0.02) benign(0.012) TCGA-90-A4ED-01 2 109524429 109524429 C G EDAR Missense_Mutation p.V284L 0.36 tolerated(1) benign(0.001) TCGA-90-A4ED-01 2 109964328 109964328 C T SH3RF3 Missense_Mutation p.P258S 0.34 deleterious(0.03) possibly_damaging(0.811) TCGA-90-A4ED-01 2 113785632 113785632 G A IL36B Intron 0.36 TCGA-90-A4ED-01 2 118572281 118572281 G A DDX18 5'UTR 0.35 TCGA-90-A4ED-01 2 118572282 118572282 G A DDX18 5'UTR 0.35 TCGA-90-A4ED-01 2 120020707 120020707 G A STEAP3 Silent p.E430E 0.22 TCGA-90-A4ED-01 2 122098462 122098462 G T CLASP1 Missense_Mutation p.S1531Y 0.32 deleterious_low_confidence(0.01) unknown(0) TCGA-90-A4ED-01 2 125530378 125530378 C T CNTNAP5 Missense_Mutation p.P845S 0.25 tolerated(0.18) benign(0.167) TCGA-90-A4ED-01 2 128346109 128346109 G A MYO7B Silent p.K611K 0.43 TCGA-90-A4ED-01 2 128394137 128394137 C T MYO7B Silent p.S2021S 0.22 TCGA-90-A4ED-01 2 128520698 128520698 G A WDR33 Missense_Mutation p.S221F 0.31 deleterious(0) unknown(0) TCGA-90-A4ED-01 2 132238026 132238026 G A TUBA3D Missense_Mutation p.E254K 0.31 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-90-A4ED-01 2 135308154 135308154 G A TMEM163 Missense_Mutation p.H149Y 0.27 tolerated(0.13) benign(0.023) TCGA-90-A4ED-01 2 136558189 136558189 C T LCT Silent p.R1618R 0.23 TCGA-90-A4ED-01 2 136558190 136558190 C T LCT Missense_Mutation p.R1618K 0.22 tolerated(0.18) benign(0.033) TCGA-90-A4ED-01 2 137814438 137814438 G A THSD7B Silent p.G196G 0.39 TCGA-90-A4ED-01 2 138771398 138771398 G A HNMT Missense_Mutation p.D193N 0.45 tolerated(0.9) benign(0.001) TCGA-90-A4ED-01 2 141108424 141108424 C T LRP1B Missense_Mutation p.G3945E 0.45 probably_damaging(0.931) TCGA-90-A4ED-01 2 141208176 141208176 C T LRP1B Missense_Mutation p.D3340N 0.23 possibly_damaging(0.822) TCGA-90-A4ED-01 2 141986855 141986855 C T LRP1B Nonsense_Mutation p.W249* 0.24 TCGA-90-A4ED-01 2 145156983 145156983 G A ZEB2 Missense_Mutation p.P591S 0.24 tolerated(0.1) possibly_damaging(0.802) TCGA-90-A4ED-01 2 145157795 145157795 G A ZEB2 Missense_Mutation p.S320F 0.41 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 2 152107515 152107515 G A RBM43 Missense_Mutation p.L327F 0.36 tolerated(0.77) benign(0) TCGA-90-A4ED-01 2 152326322 152326322 C T RIF1 Missense_Mutation p.R2347C 0.21 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 2 153520685 153520685 C A PRPF40A Missense_Mutation p.D616Y 0.28 deleterious(0) probably_damaging(0.961) TCGA-90-A4ED-01 2 154334709 154334709 G A RPRM 3'UTR 0.45 TCGA-90-A4ED-01 2 154334854 154334854 G A RPRM Missense_Mutation p.L76F 0.37 deleterious(0.04) probably_damaging(0.934) TCGA-90-A4ED-01 2 160289594 160289594 G A BAZ2B Missense_Mutation p.A525V 0.27 benign(0) TCGA-90-A4ED-01 2 163070477 163070477 C T FAP Missense_Mutation p.E325K 0.33 tolerated(0.59) benign(0.004) TCGA-90-A4ED-01 2 163374307 163374307 C T KCNH7 Silent p.S275S 0.36 TCGA-90-A4ED-01 2 163374340 163374340 C T KCNH7 Silent p.R264R 0.26 TCGA-90-A4ED-01 2 166021016 166021016 C T SCN3A Missense_Mutation p.G163E 0.16 deleterious(0) probably_damaging(0.935) TCGA-90-A4ED-01 2 166164393 166164393 C T SCN2A Missense_Mutation p.T141I 0.26 deleterious(0.02) benign(0.412) TCGA-90-A4ED-01 2 166243460 166243460 C T SCN2A Missense_Mutation p.R1586C 0.40 deleterious(0) probably_damaging(0.969) TCGA-90-A4ED-01 2 166894560 166894560 C T SCN1A Missense_Mutation p.G891E 0.24 deleterious(0) probably_damaging(0.989) TCGA-90-A4ED-01 2 167055866 167055866 C A SCN9A Missense_Mutation p.E1750D 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-90-A4ED-01 2 167297906 167297906 C A SCN7A Silent p.L719L 0.35 TCGA-90-A4ED-01 2 167327137 167327137 G A SCN7A Missense_Mutation p.P218S 0.44 tolerated(1) benign(0.231) TCGA-90-A4ED-01 2 168107320 168107320 G A XIRP2 Missense_Mutation p.E3140K 0.23 benign(0.009) TCGA-90-A4ED-01 2 168725972 168725972 C T B3GALT1 Silent p.I141I 0.22 TCGA-90-A4ED-01 2 169997026 169997026 G A LRP2 Missense_Mutation p.P4380S 0.19 possibly_damaging(0.589) TCGA-90-A4ED-01 2 169997027 169997027 G A LRP2 Silent p.P4379P 0.19 TCGA-90-A4ED-01 2 170029718 170029718 G A LRP2 Silent p.L3677L 0.14 TCGA-90-A4ED-01 2 170937152 170937152 C T UBR3 Missense_Mutation p.S1836F 0.26 deleterious(0) probably_damaging(0.996) TCGA-90-A4ED-01 2 173891401 173891401 G A RAPGEF4 Nonsense_Mutation p.W785* 0.41 TCGA-90-A4ED-01 2 174052312 174052312 C T MLTK Missense_Mutation p.P126S 0.27 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 2 174230214 174230214 C T CDCA7 Missense_Mutation p.S310L 0.37 tolerated(0.11) benign(0.015) TCGA-90-A4ED-01 2 175436841 175436841 C T WIPF1 Missense_Mutation p.G231E 0.20 deleterious_low_confidence(0.01) probably_damaging(0.922) TCGA-90-A4ED-01 2 176948466 176948466 C T EVX2 Silent p.E13E 0.40 TCGA-90-A4ED-01 2 17919518 17919518 G A SMC6 Missense_Mutation p.S105F 0.41 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 2 179368636 179368636 C T PLEKHA3 3'UTR 0.08 TCGA-90-A4ED-01 2 179396884 179396884 C T TTN Missense_Mutation p.E34820K 0.25 TCGA-90-A4ED-01 2 179427449 179427449 C T TTN Missense_Mutation p.E27804K 0.33 TCGA-90-A4ED-01 2 179430069 179430069 T C TTN Silent p.E26930E 0.35 TCGA-90-A4ED-01 2 179438954 179438954 C T TTN Missense_Mutation p.G23969R 0.17 TCGA-90-A4ED-01 2 179451898 179451898 C T TTN Missense_Mutation p.G21347D 0.37 TCGA-90-A4ED-01 2 179453881 179453881 G A TTN Silent p.A20857A 0.21 TCGA-90-A4ED-01 2 179463526 179463526 C T TTN Missense_Mutation p.V18971M 0.37 TCGA-90-A4ED-01 2 179468656 179468656 C T TTN Missense_Mutation p.G18253E 0.41 TCGA-90-A4ED-01 2 179571617 179571617 T G TTN Silent p.S9702S 0.31 TCGA-90-A4ED-01 2 179579944 179579944 C T TTN Missense_Mutation p.G8657R 0.24 TCGA-90-A4ED-01 2 179586652 179586652 C T TTN Missense_Mutation p.G7580R 0.31 TCGA-90-A4ED-01 2 179592458 179592458 G A TTN Missense_Mutation p.S6616L 0.20 TCGA-90-A4ED-01 2 179597596 179597596 C T TTN Missense_Mutation p.G5436E 0.31 TCGA-90-A4ED-01 2 179611813 179611813 C T TTN Intron 0.22 TCGA-90-A4ED-01 2 179615636 179615636 C T TTN Intron 0.30 TCGA-90-A4ED-01 2 179636176 179636176 G A TTN Silent p.L2626L 0.33 TCGA-90-A4ED-01 2 179640446 179640446 C T TTN Missense_Mutation p.E2049K 0.32 TCGA-90-A4ED-01 2 186697925 186697925 C T FSIP2 Missense_Mutation p.S6988F 0.34 possibly_damaging(0.877) TCGA-90-A4ED-01 2 187626389 187626389 G A FAM171B Silent p.K440K 0.26 TCGA-90-A4ED-01 2 189849593 189849593 G A COL3A1 Missense_Mutation p.D63N 0.34 unknown(0) TCGA-90-A4ED-01 2 190608157 190608157 G A ANKAR Missense_Mutation p.E1323K 0.22 deleterious(0.01) probably_damaging(0.954) TCGA-90-A4ED-01 2 192012839 192012839 G A STAT4 Missense_Mutation p.R31W 0.28 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 2 196681396 196681396 G A DNAH7 Silent p.I3239I 0.30 TCGA-90-A4ED-01 2 198495761 198495761 G A RFTN2 Missense_Mutation p.S301F 0.21 deleterious(0) possibly_damaging(0.686) TCGA-90-A4ED-01 2 198949862 198949862 G A PLCL1 Missense_Mutation p.G541R 0.16 deleterious(0) probably_damaging(0.987) TCGA-90-A4ED-01 2 20135325 20135325 C T WDR35 Silent p.Q829Q 0.38 TCGA-90-A4ED-01 2 201515721 201515721 G A AOX1 Missense_Mutation p.E958K 0.35 tolerated(0.14) benign(0.057) TCGA-90-A4ED-01 2 20205530 20205530 G A MATN3 Silent p.S255S 0.34 TCGA-90-A4ED-01 2 202545673 202545673 C T MPP4 Missense_Mutation p.G273R 0.27 tolerated(0.06) probably_damaging(0.994) TCGA-90-A4ED-01 2 206166226 206166226 G A PARD3B Missense_Mutation p.A749T 0.05 tolerated(0.62) benign(0.005) TCGA-90-A4ED-01 2 209007373 209007373 C T CRYGB Missense_Mutation p.D173N 0.34 deleterious(0.03) benign(0.031) TCGA-90-A4ED-01 2 209200027 209200027 C T PIKFYVE Intron 0.22 TCGA-90-A4ED-01 2 209358171 209358171 G A PTH2R Silent p.K480K 0.48 TCGA-90-A4ED-01 2 21232686 21232686 G A APOB Nonsense_Mutation p.Q2352* 0.21 TCGA-90-A4ED-01 2 21232687 21232687 G A APOB Silent p.D2351D 0.22 TCGA-90-A4ED-01 2 21245801 21245801 G A APOB Silent p.F906F 0.15 TCGA-90-A4ED-01 2 215865485 215865485 G A ABCA12 Silent p.S1041S 0.21 TCGA-90-A4ED-01 2 216289823 216289823 C T FN1 Missense_Mutation p.E344K 0.32 deleterious(0.01) probably_damaging(0.992) TCGA-90-A4ED-01 2 217280124 217280124 G A SMARCAL1 Missense_Mutation p.G233R 0.26 deleterious(0.04) benign(0.001) TCGA-90-A4ED-01 2 218682683 218682683 G A TNS1 Missense_Mutation p.P1354S 0.23 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 2 219204588 219204588 G A PNKD Missense_Mutation p.G107S 0.18 tolerated(0.1) possibly_damaging(0.863) TCGA-90-A4ED-01 2 219209671 219209671 C T PNKD Silent p.L375L 0.44 TCGA-90-A4ED-01 2 219557366 219557366 C T STK36 Missense_Mutation p.S659F 0.33 tolerated(0.72) benign(0.002) TCGA-90-A4ED-01 2 219694831 219694831 G A PRKAG3 Missense_Mutation p.P168L 0.31 tolerated(0.39) benign(0.005) TCGA-90-A4ED-01 2 219883866 219883866 C T CCDC108 Missense_Mutation p.R1170K 0.27 tolerated(0.24) benign(0.001) TCGA-90-A4ED-01 2 219894864 219894864 G A CCDC108 Missense_Mutation p.P410S 0.23 tolerated(0.53) benign(0.03) TCGA-90-A4ED-01 2 219900263 219900263 C T CCDC108 Missense_Mutation p.E161K 0.25 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 2 219900264 219900264 C T CCDC108 Silent p.K160K 0.25 TCGA-90-A4ED-01 2 219903297 219903297 G A CCDC108 Missense_Mutation p.H53Y 0.25 tolerated_low_confidence(0.86) benign(0.063) TCGA-90-A4ED-01 2 220500080 220500080 C T SLC4A3 Missense_Mutation p.P639S 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-90-A4ED-01 2 224462447 224462447 G A SCG2 Silent p.I518I 0.31 TCGA-90-A4ED-01 2 224866465 224866465 G A SERPINE2 Silent p.I63I 0.26 TCGA-90-A4ED-01 2 226446901 226446901 C T NYAP2 Silent p.F256F 0.27 TCGA-90-A4ED-01 2 227915820 227915820 C T COL4A4 Missense_Mutation p.G1008E 0.24 unknown(0) TCGA-90-A4ED-01 2 228563928 228563928 G A SLC19A3 Missense_Mutation p.S168L 0.34 deleterious(0.05) benign(0.344) TCGA-90-A4ED-01 2 228883077 228883077 C T SPHKAP Silent p.K831K 0.35 TCGA-90-A4ED-01 2 230450654 230450654 C T DNER Missense_Mutation p.R256Q 0.36 tolerated(0.18) possibly_damaging(0.63) TCGA-90-A4ED-01 2 230633984 230633984 C T TRIP12 Missense_Mutation p.E1881K 0.28 deleterious(0.01) possibly_damaging(0.814) TCGA-90-A4ED-01 2 230636299 230636299 G A TRIP12 Missense_Mutation p.S1840L 0.31 deleterious(0) probably_damaging(0.992) TCGA-90-A4ED-01 2 230902197 230902197 C T SLC16A14 Missense_Mutation p.G478S 0.17 deleterious(0.01) probably_damaging(0.974) TCGA-90-A4ED-01 2 231112720 231112720 C T SP140 Missense_Mutation p.P278S 0.38 tolerated(0.33) benign(0.078) TCGA-90-A4ED-01 2 233349209 233349209 G A ECEL1 Missense_Mutation p.S386L 0.22 deleterious(0) possibly_damaging(0.898) TCGA-90-A4ED-01 2 233612407 233612407 C T GIGYF2 Missense_Mutation p.R42C 0.37 probably_damaging(0.998) TCGA-90-A4ED-01 2 233655797 233655797 C T GIGYF2 Missense_Mutation p.S359F 0.34 probably_damaging(0.961) TCGA-90-A4ED-01 2 234078733 234078733 C T INPP5D Missense_Mutation p.P560S 0.22 tolerated(0.37) benign(0.119) TCGA-90-A4ED-01 2 234394437 234394437 G A USP40 Silent p.F1139F 0.22 TCGA-90-A4ED-01 2 234846094 234846094 G A TRPM8 Missense_Mutation p.E97K 0.39 deleterious(0.03) benign(0.437) TCGA-90-A4ED-01 2 238234251 238234251 C T COL6A3 Missense_Mutation p.E3149K 0.37 unknown(0) TCGA-90-A4ED-01 2 238280349 238280349 G A COL6A3 Intron 0.34 TCGA-90-A4ED-01 2 238287378 238287378 C T COL6A3 Missense_Mutation p.D800N 0.31 possibly_damaging(0.836) TCGA-90-A4ED-01 2 238436138 238436138 C T MLPH Silent p.G333G 0.33 TCGA-90-A4ED-01 2 239025578 239025578 C T ESPNL Missense_Mutation p.P297L 0.39 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 2 239040337 239040337 G A ESPNL Silent p.K994K 0.33 TCGA-90-A4ED-01 2 239040338 239040338 G A ESPNL Missense_Mutation p.E995K 0.32 deleterious(0) possibly_damaging(0.834) TCGA-90-A4ED-01 2 240056269 240056269 G A HDAC4 Missense_Mutation p.S350F 0.34 deleterious(0.02) probably_damaging(0.998) TCGA-90-A4ED-01 2 240984690 240984690 G A OR6B3 Missense_Mutation p.S267F 0.38 deleterious(0) benign(0.182) TCGA-90-A4ED-01 2 240985205 240985205 G A OR6B3 Silent p.V95V 0.29 TCGA-90-A4ED-01 2 241465836 241465836 T C ANKMY1 Missense_Mutation p.N238S 0.26 tolerated(0.08) benign(0.088) TCGA-90-A4ED-01 2 241569408 241569408 C T GPR35 Silent p.L44L 0.16 TCGA-90-A4ED-01 2 241737129 241737129 G A KIF1A Missense_Mutation p.P14L 0.36 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 2 242741319 242741319 C T GAL3ST2 Silent p.S81S 0.39 TCGA-90-A4ED-01 2 25964795 25964795 G A ASXL2 3'UTR 0.25 TCGA-90-A4ED-01 2 25965921 25965921 G A ASXL2 Silent p.F1095F 0.42 TCGA-90-A4ED-01 2 26502005 26502005 C T HADHB Silent p.L211L 0.33 TCGA-90-A4ED-01 2 27360638 27360638 C T C2orf53 Missense_Mutation p.G187E 0.40 tolerated(0.37) benign(0.382) TCGA-90-A4ED-01 2 27478197 27478197 C T SLC30A3 Missense_Mutation p.E384K 0.22 tolerated(0.07) benign(0.052) TCGA-90-A4ED-01 2 27549628 27549628 G A GTF3C2 Missense_Mutation p.H884Y 0.42 deleterious(0.05) benign(0.176) TCGA-90-A4ED-01 2 27601443 27601443 C T ZNF513 Silent p.G230G 0.42 TCGA-90-A4ED-01 2 29917743 29917743 C T ALK Missense_Mutation p.A309T 0.22 tolerated(0.81) benign(0.003) TCGA-90-A4ED-01 2 30863371 30863371 C T LCLAT1 Silent p.T377T 0.20 TCGA-90-A4ED-01 2 31483722 31483722 G A EHD3 Silent p.Q283Q 0.30 TCGA-90-A4ED-01 2 32673990 32673990 C T BIRC6 Missense_Mutation p.L1538F 0.23 probably_damaging(0.994) TCGA-90-A4ED-01 2 33764239 33764239 C T RASGRP3 Missense_Mutation p.P414S 0.20 tolerated(0.11) possibly_damaging(0.56) TCGA-90-A4ED-01 2 37028483 37028483 G A VIT Silent p.T366T 0.49 TCGA-90-A4ED-01 2 37873403 37873403 G A CDC42EP3 Missense_Mutation p.P110S 0.43 deleterious(0.01) possibly_damaging(0.728) TCGA-90-A4ED-01 2 39514089 39514089 G A MAP4K3 Silent p.S497S 0.49 TCGA-90-A4ED-01 2 43452381 43452381 G A ZFP36L2 Missense_Mutation p.R188C 0.37 deleterious(0) probably_damaging(0.973) TCGA-90-A4ED-01 2 49190219 49190219 C T FSHR Missense_Mutation p.D581N 0.19 deleterious(0.03) possibly_damaging(0.906) TCGA-90-A4ED-01 2 50318590 50318590 C T NRXN1 Missense_Mutation p.D1237N 0.21 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 2 54081633 54081633 G C GPR75 Silent p.S87S 0.52 TCGA-90-A4ED-01 2 54873337 54873337 C T SPTBN1 Nonsense_Mutation p.Q1531* 0.33 TCGA-90-A4ED-01 2 54891666 54891666 C T SPTBN1 Missense_Mutation p.P2166L 0.28 tolerated(0.08) benign(0.005) TCGA-90-A4ED-01 2 55523410 55523410 T C CCDC88A Missense_Mutation p.K1691R 0.23 tolerated(1) benign(0.197) TCGA-90-A4ED-01 2 55539661 55539661 G A CCDC88A Nonsense_Mutation p.Q1329* 0.33 TCGA-90-A4ED-01 2 60688031 60688031 G A BCL11A Silent p.P672P 0.33 TCGA-90-A4ED-01 2 61508334 61508334 G A USP34 Missense_Mutation p.S1681F 0.29 deleterious(0) possibly_damaging(0.675) TCGA-90-A4ED-01 2 61575239 61575239 G A USP34 Missense_Mutation p.S684L 0.22 deleterious_low_confidence(0.02) benign(0.086) TCGA-90-A4ED-01 2 64779889 64779889 C T AFTPH Silent p.I427I 0.27 TCGA-90-A4ED-01 2 65228618 65228618 C T SLC1A4 Silent p.F188F 0.18 TCGA-90-A4ED-01 2 67631205 67631205 C T ETAA1 Missense_Mutation p.S464L 0.10 tolerated(0.25) benign(0.027) TCGA-90-A4ED-01 2 69093044 69093044 A G BMP10 Missense_Mutation p.F332L 0.22 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 2 69098268 69098268 C T BMP10 Missense_Mutation p.D75N 0.21 tolerated(0.42) benign(0.005) TCGA-90-A4ED-01 2 69173339 69173339 C T GKN2 Intron 0.29 TCGA-90-A4ED-01 2 69372528 69372528 C T ANTXR1 Intron 0.16 TCGA-90-A4ED-01 2 69555506 69555506 G A GFPT1 Missense_Mutation p.P597L 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-90-A4ED-01 2 70121098 70121098 C A SNRNP27 5'UTR 0.15 TCGA-90-A4ED-01 2 71062693 71062693 G A CD207 Missense_Mutation p.P40L 0.13 tolerated(1) benign(0) TCGA-90-A4ED-01 2 71300655 71300655 C T NAGK Silent p.S216S 0.26 TCGA-90-A4ED-01 2 71351482 71351482 G A MCEE Missense_Mutation p.P78S 0.25 tolerated(0.13) benign(0.031) TCGA-90-A4ED-01 2 73519460 73519460 C T EGR4 Missense_Mutation p.D299N 0.43 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 2 73679688 73679688 C T ALMS1 Missense_Mutation p.P2011S 0.32 benign(0.17) TCGA-90-A4ED-01 2 74320711 74320711 C T TET3 Missense_Mutation p.P927L 0.40 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 2 74460642 74460642 G A SLC4A5 Missense_Mutation p.P828S 0.16 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 2 74720117 74720117 T A TTC31 Silent p.A444A 0.34 TCGA-90-A4ED-01 2 74750657 74750657 G A DQX1 Missense_Mutation p.S275F 0.23 tolerated(0.11) benign(0.157) TCGA-90-A4ED-01 2 79253855 79253855 G A REG3G Silent p.K31K 0.33 TCGA-90-A4ED-01 2 79349995 79349995 C T REG1A Missense_Mutation p.S117F 0.24 deleterious(0.02) probably_damaging(0.983) TCGA-90-A4ED-01 2 80529419 80529419 G A LRRTM1 Missense_Mutation p.S509L 0.40 deleterious(0.01) probably_damaging(0.968) TCGA-90-A4ED-01 2 86693784 86693784 C T KDM3A Missense_Mutation p.P433S 0.36 tolerated_low_confidence(0.68) benign(0) TCGA-90-A4ED-01 2 88828744 88828744 G A TEX37 Missense_Mutation p.E99K 0.44 tolerated_low_confidence(0.31) benign(0) TCGA-90-A4ED-01 2 88890108 88890108 C T EIF2AK3 Missense_Mutation p.A340T 0.44 deleterious(0.02) possibly_damaging(0.501) TCGA-90-A4ED-01 2 89266226 89266226 C T IGKV1-6 Missense_Mutation p.G11E 0.34 tolerated(0.08) benign(0.404) TCGA-90-A4ED-01 2 89309919 89309919 G A IGKV1-9 Silent p.L12L 0.42 TCGA-90-A4ED-01 2 90060918 90060918 G A IGKV6D-21 Missense_Mutation p.D89N 0.23 deleterious(0.01) possibly_damaging(0.816) TCGA-90-A4ED-01 2 90121895 90121895 G A IGKV1D-17 Missense_Mutation p.G38E 0.11 deleterious(0.01) probably_damaging(0.977) TCGA-90-A4ED-01 2 95481750 95481750 C T ANKRD20A8P Intron 0.32 TCGA-90-A4ED-01 2 96698163 96698163 G A GPAT2 Intron 0.50 TCGA-90-A4ED-01 2 96963422 96963422 G A SNRNP200 Nonsense_Mutation p.R386* 0.33 TCGA-90-A4ED-01 2 99454632 99454632 G A KIAA1211L Silent p.V63V 0.24 TCGA-90-A4ED-01 3 10106426 10106426 C T FANCD2 Missense_Mutation p.P679S 0.21 deleterious(0.03) benign(0.444) TCGA-90-A4ED-01 3 10331493 10331493 C T GHRL Missense_Mutation p.E60K 0.25 tolerated(0.05) benign(0.134) TCGA-90-A4ED-01 3 10331494 10331494 C T GHRL Silent p.P59P 0.25 TCGA-90-A4ED-01 3 108219015 108219015 G A MYH15 Missense_Mutation p.P169L 0.27 deleterious(0.01) probably_damaging(1) TCGA-90-A4ED-01 3 10858088 10858088 G A SLC6A11 Silent p.A46A 0.50 TCGA-90-A4ED-01 3 109047864 109047864 G A DPPA4 Missense_Mutation p.H251Y 0.19 tolerated(0.1) benign(0.151) TCGA-90-A4ED-01 3 11059050 11059050 C T SLC6A1 Silent p.F51F 0.22 TCGA-90-A4ED-01 3 11067975 11067975 C T SLC6A1 Silent p.F336F 0.29 TCGA-90-A4ED-01 3 111667835 111667835 C T PHLDB2 Silent p.S848S 0.22 TCGA-90-A4ED-01 3 111795923 111795923 C T TMPRSS7 Missense_Mutation p.P593L 0.40 tolerated(0.11) benign(0.106) TCGA-90-A4ED-01 3 112184933 112184933 C T BTLA 3'UTR 0.32 TCGA-90-A4ED-01 3 112642487 112642487 C T CD200R1 3'UTR 0.29 TCGA-90-A4ED-01 3 11301549 11301549 C T HRH1 Missense_Mutation p.P276S 0.27 tolerated(0.97) benign(0.005) TCGA-90-A4ED-01 3 113304107 113304107 C T SIDT1 Missense_Mutation p.H331Y 0.25 tolerated(1) benign(0.06) TCGA-90-A4ED-01 3 120973834 120973834 G A STXBP5L Missense_Mutation p.E512K 0.33 deleterious(0) possibly_damaging(0.529) TCGA-90-A4ED-01 3 121647395 121647395 C T SLC15A2 Missense_Mutation p.S445F 0.22 deleterious(0.02) benign(0.103) TCGA-90-A4ED-01 3 121712509 121712509 C T ILDR1 Missense_Mutation p.D363N 0.35 deleterious(0.02) possibly_damaging(0.677) TCGA-90-A4ED-01 3 122152568 122152568 C T KPNA1 Missense_Mutation p.R397K 0.39 tolerated(1) possibly_damaging(0.634) TCGA-90-A4ED-01 3 122880759 122880759 C T PDIA5 Silent p.L504L 0.38 TCGA-90-A4ED-01 3 123166759 123166759 A G ADCY5 Silent p.L212L 0.12 TCGA-90-A4ED-01 3 123167129 123167129 G A ADCY5 Silent p.P88P 0.24 TCGA-90-A4ED-01 3 123167130 123167130 G A ADCY5 Missense_Mutation p.P88L 0.18 tolerated_low_confidence(0.07) benign(0) TCGA-90-A4ED-01 3 123418875 123418875 G A MYLK Missense_Mutation p.S1147F 0.29 deleterious(0) probably_damaging(0.992) TCGA-90-A4ED-01 3 124044858 124044858 C T KALRN Missense_Mutation p.S373F 0.28 deleterious(0) possibly_damaging(0.906) TCGA-90-A4ED-01 3 12783993 12783993 C T TMEM40 Silent p.G105G 0.22 TCGA-90-A4ED-01 3 128979233 128979233 C T COPG1 Missense_Mutation p.T310I 0.25 deleterious(0.03) benign(0.35) TCGA-90-A4ED-01 3 129130170 129130170 G A EFCAB12 Missense_Mutation p.S289F 0.21 tolerated(0.38) possibly_damaging(0.685) TCGA-90-A4ED-01 3 129226579 129226579 G A IFT122 Missense_Mutation p.G1005S 0.29 deleterious(0.02) benign(0.005) TCGA-90-A4ED-01 3 132201091 132201091 C T DNAJC13 Missense_Mutation p.P966S 0.36 tolerated(0.14) benign(0.046) TCGA-90-A4ED-01 3 133098691 133098691 C T TMEM108 Missense_Mutation p.P46S 0.25 tolerated_low_confidence(0.36) probably_damaging(0.996) TCGA-90-A4ED-01 3 133119179 133119179 C T BFSP2 Silent p.F84F 0.23 TCGA-90-A4ED-01 3 13417893 13417893 G A NUP210 Silent p.F397F 0.30 TCGA-90-A4ED-01 3 137843595 137843595 C T A4GNT Silent p.E178E 0.25 TCGA-90-A4ED-01 3 141526658 141526658 C T GRK7 Silent p.L408L 0.30 TCGA-90-A4ED-01 3 142030534 142030534 C T XRN1 Missense_Mutation p.R1647Q 0.33 tolerated_low_confidence(1) benign(0) TCGA-90-A4ED-01 3 142278254 142278254 G A ATR Missense_Mutation p.S524F 0.22 tolerated_low_confidence(0.7) benign(0.042) TCGA-90-A4ED-01 3 145797043 145797043 C T PLOD2 Missense_Mutation p.G454R 0.35 deleterious(0) probably_damaging(0.945) TCGA-90-A4ED-01 3 14755547 14755547 C T C3orf20 Silent p.I398I 0.29 TCGA-90-A4ED-01 3 148459501 148459501 G A AGTR1 Missense_Mutation p.E227K 0.19 tolerated(0.78) benign(0.001) TCGA-90-A4ED-01 3 14905769 14905769 T A FGD5 Splice_Site p.X886_splice 0.20 TCGA-90-A4ED-01 3 14964636 14964636 C T FGD5 Silent p.F1297F 0.28 TCGA-90-A4ED-01 3 150264491 150264491 G A EIF2A 5'UTR 0.26 TCGA-90-A4ED-01 3 150931439 150931439 C T P2RY14 Silent p.R222R 0.19 TCGA-90-A4ED-01 3 154889951 154889951 C T MME Missense_Mutation p.P676S 0.29 deleterious(0) probably_damaging(0.984) TCGA-90-A4ED-01 3 156241736 156241736 G A KCNAB1 Missense_Mutation p.A361T 0.31 deleterious(0.02) benign(0.377) TCGA-90-A4ED-01 3 15628048 15628048 G A HACL1 Missense_Mutation p.P148L 0.19 deleterious(0) possibly_damaging(0.734) TCGA-90-A4ED-01 3 164786574 164786574 C T SI Missense_Mutation p.G140E 0.31 deleterious(0.02) possibly_damaging(0.641) TCGA-90-A4ED-01 3 164905992 164905992 C T SLITRK3 Missense_Mutation p.G876E 0.39 tolerated_low_confidence(0.27) probably_damaging(0.972) TCGA-90-A4ED-01 3 165548251 165548251 G A BCHE Missense_Mutation p.P191S 0.28 deleterious(0.01) possibly_damaging(0.768) TCGA-90-A4ED-01 3 168833910 168833910 C T MECOM Missense_Mutation p.D461N 0.33 deleterious(0.03) probably_damaging(0.967) TCGA-90-A4ED-01 3 172165709 172165709 G A GHSR Silent p.F165F 0.27 TCGA-90-A4ED-01 3 172224569 172224569 G A TNFSF10 Nonsense_Mutation p.Q187* 0.28 TCGA-90-A4ED-01 3 172501617 172501617 C T ECT2 Missense_Mutation p.P549L 0.28 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 3 172537950 172537950 C T ECT2 Missense_Mutation p.P890S 0.27 tolerated(0.11) benign(0.184) TCGA-90-A4ED-01 3 175521030 175521030 C T NAALADL2 3'UTR 0.28 TCGA-90-A4ED-01 3 182547502 182547502 C T ATP11B Missense_Mutation p.P93S 0.23 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 3 183885371 183885371 T A DVL3 Missense_Mutation p.L401Q 0.29 tolerated(0.06) benign(0.284) TCGA-90-A4ED-01 3 185983053 185983053 C T DGKG Missense_Mutation p.G418S 0.21 tolerated(0.4) benign(0.066) TCGA-90-A4ED-01 3 186394986 186394986 C T HRG Missense_Mutation p.P298S 0.33 deleterious(0.04) possibly_damaging(0.641) TCGA-90-A4ED-01 3 187088803 187088803 G A RTP4 Missense_Mutation p.G128E 0.13 tolerated(0.13) probably_damaging(0.917) TCGA-90-A4ED-01 3 187444544 187444544 G A BCL6 Silent p.L561L 0.25 TCGA-90-A4ED-01 3 187447245 187447245 G A BCL6 Silent p.F316F 0.28 TCGA-90-A4ED-01 3 191861750 191861750 G C FGF12 3'UTR 0.39 TCGA-90-A4ED-01 3 193232613 193232613 A G ATP13A4 Silent p.L36L 0.41 TCGA-90-A4ED-01 3 194373782 194373782 G A LSG1 Silent p.S283S 0.21 TCGA-90-A4ED-01 3 194390778 194390778 G A LSG1 Silent p.F62F 0.24 TCGA-90-A4ED-01 3 195516546 195516546 G A MUC4 Silent p.S635S 0.29 TCGA-90-A4ED-01 3 195538626 195538626 G A MUC4 Silent p.L21L 0.30 TCGA-90-A4ED-01 3 195538763 195538763 G A MUC4 5'UTR 0.31 TCGA-90-A4ED-01 3 197640842 197640842 A T IQCG Missense_Mutation p.N266K 0.26 tolerated(0.09) benign(0.058) TCGA-90-A4ED-01 3 197687262 197687262 C T LMLN Missense_Mutation p.S57F 0.33 tolerated_low_confidence(0.18) benign(0.293) TCGA-90-A4ED-01 3 20215983 20215983 G A SGOL1 Missense_Mutation p.P347L 0.25 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 3 20215984 20215984 G A SGOL1 Missense_Mutation p.P347S 0.25 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 3 27213334 27213334 C T NEK10 Missense_Mutation p.G936E 0.17 tolerated(0.06) benign(0.185) TCGA-90-A4ED-01 3 32612250 32612250 C T DYNC1LI1 Missense_Mutation p.G5R 0.24 tolerated_low_confidence(0.09) probably_damaging(0.953) TCGA-90-A4ED-01 3 33883411 33883411 C T PDCD6IP Missense_Mutation p.P407S 0.27 deleterious(0) probably_damaging(0.972) TCGA-90-A4ED-01 3 36779671 36779671 C T DCLK3 Silent p.G160G 0.27 TCGA-90-A4ED-01 3 36779911 36779911 G A DCLK3 Silent p.P80P 0.24 TCGA-90-A4ED-01 3 37061932 37061932 C T MLH1 Missense_Mutation p.S339F 0.28 deleterious(0.01) possibly_damaging(0.474) TCGA-90-A4ED-01 3 37067384 37067384 T C MLH1 Missense_Mutation p.L432P 0.33 tolerated(0.28) benign(0) TCGA-90-A4ED-01 3 37323589 37323589 C T GOLGA4 Silent p.S123S 0.27 TCGA-90-A4ED-01 3 37360558 37360558 C T GOLGA4 Missense_Mutation p.S495F 0.19 possibly_damaging(0.851) TCGA-90-A4ED-01 3 37512607 37512607 G A ITGA9 Missense_Mutation p.E99K 0.24 tolerated(0.07) probably_damaging(0.922) TCGA-90-A4ED-01 3 38616818 38616818 G A SCN5A Silent p.I1212I 0.11 TCGA-90-A4ED-01 3 38739257 38739257 C T SCN10A Silent p.L1818L 0.44 TCGA-90-A4ED-01 3 38768451 38768451 C T SCN10A Silent p.Q911Q 0.26 TCGA-90-A4ED-01 3 38770244 38770244 C T SCN10A Missense_Mutation p.G810E 0.24 deleterious(0) probably_damaging(0.973) TCGA-90-A4ED-01 3 38802855 38802855 C T SCN10A Silent p.G237G 0.27 TCGA-90-A4ED-01 3 39230053 39230053 G A XIRP1 Missense_Mutation p.S295F 0.38 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 3 40208425 40208425 G A MYRIP Silent p.G213G 0.25 TCGA-90-A4ED-01 3 41954357 41954357 A T ULK4 Missense_Mutation p.W280R 0.28 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 3 42751193 42751193 C T CCDC13 Missense_Mutation p.M657I 0.28 tolerated(1) benign(0.002) TCGA-90-A4ED-01 3 44438281 44438281 C T TCAIM Silent p.G280G 0.20 TCGA-90-A4ED-01 3 46008079 46008079 G A FYCO1 Missense_Mutation p.T916I 0.19 deleterious(0) benign(0.418) TCGA-90-A4ED-01 3 46307696 46307696 G A CCR3 Silent p.P370P 0.39 TCGA-90-A4ED-01 3 46307697 46307697 G A CCR3 Missense_Mutation p.E371K 0.40 deleterious(0.03) benign(0.329) TCGA-90-A4ED-01 3 46539553 46539553 A T RTP3 Translation_Start_Site p.M1? 0.25 deleterious(0.02) possibly_damaging(0.527) TCGA-90-A4ED-01 3 46619481 46619481 C T TDGF1 Missense_Mutation p.R8C 0.26 tolerated(0.08) benign(0.007) TCGA-90-A4ED-01 3 46784450 46784450 G A PRSS45 Silent p.L136L 0.34 TCGA-90-A4ED-01 3 47037237 47037237 C T NBEAL2 Silent p.A644A 0.14 TCGA-90-A4ED-01 3 4716886 4716886 G A ITPR1 Silent p.A896A 0.48 TCGA-90-A4ED-01 3 47312725 47312725 A T KIF9 Splice_Site p.X197_splice 0.40 TCGA-90-A4ED-01 3 4732989 4732989 G A ITPR1 Silent p.G1315G 0.41 TCGA-90-A4ED-01 3 47537531 47537531 A G ELP6 3'UTR 0.25 TCGA-90-A4ED-01 3 48451076 48451076 G A PLXNB1 Missense_Mutation p.P1948S 0.25 deleterious(0) probably_damaging(0.986) TCGA-90-A4ED-01 3 48684274 48684274 G A CELSR3 Missense_Mutation p.S2406F 0.12 tolerated(0.06) possibly_damaging(0.873) TCGA-90-A4ED-01 3 49055898 49055898 G A DALRD3 Missense_Mutation p.H34Y 0.38 deleterious(0.03) benign(0.013) TCGA-90-A4ED-01 3 49055899 49055899 G A DALRD3 Silent p.R33R 0.38 TCGA-90-A4ED-01 3 49462862 49462862 C T NICN1 Missense_Mutation p.V145M 0.12 tolerated(0.16) benign(0.005) TCGA-90-A4ED-01 3 49932975 49932975 G A MST1R Missense_Mutation p.P990L 0.17 tolerated(0.14) benign(0.013) TCGA-90-A4ED-01 3 49933693 49933693 G A MST1R Missense_Mutation p.P862S 0.27 tolerated(0.34) benign(0.284) TCGA-90-A4ED-01 3 50103886 50103886 C T RBM6 Missense_Mutation p.P965L 0.25 deleterious(0) probably_damaging(0.986) TCGA-90-A4ED-01 3 50222898 50222898 C T SEMA3F Silent p.V493V 0.42 TCGA-90-A4ED-01 3 50295059 50295059 C T GNAI2 Silent p.F335F 0.34 TCGA-90-A4ED-01 3 50329948 50329948 G A IFRD2 5'Flank 0.29 TCGA-90-A4ED-01 3 50340141 50340141 G A HYAL1 Missense_Mutation p.P83S 0.23 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 3 50615293 50615293 C T HEMK1 Silent p.L217L 0.25 TCGA-90-A4ED-01 3 51393665 51393665 G A DOCK3 Silent p.K1465K 0.22 TCGA-90-A4ED-01 3 52476303 52476303 G A SEMA3G Silent p.F119F 0.16 TCGA-90-A4ED-01 3 53220356 53220356 G A PRKCD Silent p.K420K 0.28 TCGA-90-A4ED-01 3 55513477 55513477 A C WNT5A Missense_Mutation p.Y86D 0.32 deleterious(0) probably_damaging(0.993) TCGA-90-A4ED-01 3 58092592 58092592 C T FLNB Missense_Mutation p.P645S 0.35 deleterious(0.02) benign(0.017) TCGA-90-A4ED-01 3 58385103 58385103 C T PXK Missense_Mutation p.P394S 0.15 deleterious(0.03) benign(0.364) TCGA-90-A4ED-01 3 58410668 58410668 G A PXK Missense_Mutation p.S573N 0.22 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-90-A4ED-01 3 58625856 58625856 C T FAM3D Missense_Mutation p.G124E 0.24 deleterious(0.02) probably_damaging(1) TCGA-90-A4ED-01 3 62189058 62189058 C T PTPRG Missense_Mutation p.P530L 0.15 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 3 62254821 62254821 A G PTPRG Missense_Mutation p.I996V 0.32 tolerated(1) benign(0.001) TCGA-90-A4ED-01 3 63429082 63429082 C T SYNPR Intron 0.40 TCGA-90-A4ED-01 3 64084955 64084955 G A PRICKLE2 Silent p.F769F 0.35 TCGA-90-A4ED-01 3 64507881 64507881 G A ADAMTS9 Missense_Mutation p.S1925F 0.25 deleterious(0.04) possibly_damaging(0.908) TCGA-90-A4ED-01 3 65342225 65342225 G A MAGI1 Missense_Mutation p.S1406F 0.26 deleterious_low_confidence(0) unknown(0) TCGA-90-A4ED-01 3 69134345 69134345 G A ARL6IP5 Silent p.V49V 0.36 TCGA-90-A4ED-01 3 69151154 69151154 C T ARL6IP5 Missense_Mutation p.S114F 0.30 tolerated(0.67) probably_damaging(1) TCGA-90-A4ED-01 3 69167985 69167985 C T LMOD3 Silent p.E507E 0.30 TCGA-90-A4ED-01 3 69171267 69171267 G A LMOD3 Missense_Mutation p.P91S 0.32 tolerated(0.06) probably_damaging(1) TCGA-90-A4ED-01 3 74411138 74411138 C T CNTN3 Missense_Mutation p.V423M 0.26 tolerated(0.08) benign(0.056) TCGA-90-A4ED-01 3 75480028 75480028 C T RP11-803B1.8 5'Flank 0.27 TCGA-90-A4ED-01 3 78649412 78649412 G A ROBO1 Missense_Mutation p.P1598S 0.30 deleterious_low_confidence(0.02) probably_damaging(0.986) TCGA-90-A4ED-01 3 88040393 88040393 G A HTR1F Missense_Mutation p.G165E 0.24 tolerated(0.33) benign(0.099) TCGA-90-A4ED-01 3 93781848 93781848 G A NSUN3 5'UTR 0.45 TCGA-90-A4ED-01 3 96706332 96706332 G A EPHA6 Silent p.R203R 0.27 TCGA-90-A4ED-01 3 96706333 96706333 G A EPHA6 Missense_Mutation p.D204N 0.29 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 3 9825861 9825861 C A TADA3 Missense_Mutation p.K319N 0.33 deleterious(0.01) possibly_damaging(0.501) TCGA-90-A4ED-01 3 99513847 99513847 C T COL8A1 Missense_Mutation p.P368S 0.20 deleterious(0.03) unknown(0) TCGA-90-A4ED-01 4 100232724 100232724 A G ADH1B Silent p.P306P 0.18 TCGA-90-A4ED-01 4 100784217 100784217 C T DAPP1 Silent p.F196F 0.23 TCGA-90-A4ED-01 4 103537766 103537766 C T NFKB1 3'UTR 0.12 TCGA-90-A4ED-01 4 108603280 108603280 C T PAPSS1 Missense_Mutation p.G187E 0.22 deleterious(0) possibly_damaging(0.906) TCGA-90-A4ED-01 4 114279687 114279687 C T ANK2 Missense_Mutation p.P3305S 0.21 benign(0.053) TCGA-90-A4ED-01 4 114279943 114279943 C T ANK2 Missense_Mutation p.S3390F 0.33 probably_damaging(0.967) TCGA-90-A4ED-01 4 115544722 115544722 C T UGT8 Missense_Mutation p.S229F 0.28 deleterious(0.01) probably_damaging(0.966) TCGA-90-A4ED-01 4 115766978 115766978 C T NDST4 Splice_Site p.X705_splice 0.30 TCGA-90-A4ED-01 4 123257477 123257477 C T KIAA1109 Silent p.I3993I 0.13 TCGA-90-A4ED-01 4 126241933 126241933 C T FAT4 Missense_Mutation p.S1456F 0.23 possibly_damaging(0.56) TCGA-90-A4ED-01 4 128694617 128694617 C T SLC25A31 Missense_Mutation p.S279F 0.27 deleterious(0) benign(0.032) TCGA-90-A4ED-01 4 128870991 128870991 C T MFSD8 Missense_Mutation p.V56M 0.26 deleterious(0) probably_damaging(0.983) TCGA-90-A4ED-01 4 141463768 141463768 C T ELMOD2 Missense_Mutation p.L192F 0.25 deleterious(0) probably_damaging(0.943) TCGA-90-A4ED-01 4 144469171 144469171 C T SMARCA5 Silent p.L955L 0.24 TCGA-90-A4ED-01 4 151203635 151203635 G A LRBA Silent p.L2772L 0.27 TCGA-90-A4ED-01 4 151504491 151504491 G A MAB21L2 Missense_Mutation p.D104N 0.16 tolerated(0.1) probably_damaging(0.99) TCGA-90-A4ED-01 4 151727493 151727493 C T LRBA Silent p.V1816V 0.19 TCGA-90-A4ED-01 4 155157326 155157326 G A DCHS2 Silent p.L2371L 0.32 TCGA-90-A4ED-01 4 155158165 155158165 G A DCHS2 Missense_Mutation p.P2092S 0.19 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 4 155250780 155250780 G A DCHS2 Silent p.S816S 0.29 TCGA-90-A4ED-01 4 155505920 155505920 G A FGA Missense_Mutation p.P653S 0.21 deleterious(0.05) probably_damaging(0.967) TCGA-90-A4ED-01 4 157689023 157689023 G C PDGFC Missense_Mutation p.L275V 0.19 deleterious(0.02) benign(0.441) TCGA-90-A4ED-01 4 15937698 15937698 C T FGFBP1 Silent p.V186V 0.22 TCGA-90-A4ED-01 4 159603465 159603465 C T ETFDH Silent p.I98I 0.30 TCGA-90-A4ED-01 4 159836328 159836328 C T C4orf45 Silent p.K180K 0.33 TCGA-90-A4ED-01 4 160274736 160274736 C T RAPGEF2 Missense_Mutation p.R1236C 0.19 tolerated_low_confidence(0.12) benign(0.016) TCGA-90-A4ED-01 4 164271716 164271716 C T NPY5R Silent p.F97F 0.17 TCGA-90-A4ED-01 4 164272708 164272708 T C NPY5R Missense_Mutation p.L428P 0.22 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 4 164394322 164394322 C T TKTL2 Missense_Mutation p.G189R 0.30 deleterious(0) probably_damaging(0.939) TCGA-90-A4ED-01 4 168155159 168155159 C T SPOCK3 Missense_Mutation p.G56R 0.15 tolerated(0.19) probably_damaging(1) TCGA-90-A4ED-01 4 170051300 170051300 A G SH3RF1 Missense_Mutation p.I359T 0.30 deleterious(0.04) probably_damaging(0.997) TCGA-90-A4ED-01 4 170611719 170611719 C T CLCN3 Silent p.I215I 0.09 TCGA-90-A4ED-01 4 172735700 172735700 C T GALNTL6 5'UTR 0.17 TCGA-90-A4ED-01 4 173150844 173150844 C T GALNTL6 Missense_Mutation p.S59L 0.24 tolerated(0.32) benign(0) TCGA-90-A4ED-01 4 175896911 175896911 C T ADAM29 Missense_Mutation p.P79S 0.23 tolerated(0.31) benign(0.31) TCGA-90-A4ED-01 4 175897816 175897816 G A ADAM29 Silent p.E380E 0.22 TCGA-90-A4ED-01 4 175898197 175898197 G A ADAM29 Silent p.R507R 0.21 TCGA-90-A4ED-01 4 177100625 177100625 C T WDR17 Silent p.F1288F 0.29 TCGA-90-A4ED-01 4 177190118 177190118 G A ASB5 Missense_Mutation p.R48C 0.15 deleterious(0) probably_damaging(0.99) TCGA-90-A4ED-01 4 177608366 177608366 T A VEGFC Nonsense_Mutation p.K374* 0.32 TCGA-90-A4ED-01 4 177608992 177608992 G A VEGFC Missense_Mutation p.S265F 0.31 tolerated(0.12) benign(0.009) TCGA-90-A4ED-01 4 183651468 183651468 G A TENM3 Missense_Mutation p.G901R 0.25 deleterious(0) probably_damaging(0.98) TCGA-90-A4ED-01 4 183694775 183694775 C T TENM3 Silent p.I1681I 0.34 TCGA-90-A4ED-01 4 184598672 184598672 G A TRAPPC11 Missense_Mutation p.E266K 0.19 deleterious(0) possibly_damaging(0.621) TCGA-90-A4ED-01 4 185320077 185320077 G A IRF2 Missense_Mutation p.S229F 0.26 deleterious(0) possibly_damaging(0.454) TCGA-90-A4ED-01 4 185941613 185941613 C T HELT Missense_Mutation p.S224L 0.21 tolerated(0.14) benign(0.008) TCGA-90-A4ED-01 4 189068517 189068517 C T TRIML1 Silent p.S466S 0.14 TCGA-90-A4ED-01 4 20597405 20597405 C T SLIT2 Missense_Mutation p.H1090Y 0.34 tolerated(0.07) benign(0.253) TCGA-90-A4ED-01 4 21699040 21699040 C T KCNIP4 Intron 0.24 TCGA-90-A4ED-01 4 25677912 25677912 C T SLC34A2 Silent p.F538F 0.19 TCGA-90-A4ED-01 4 26667958 26667958 G A TBC1D19 Missense_Mutation p.E199K 0.26 tolerated(0.81) benign(0.002) TCGA-90-A4ED-01 4 2702203 2702203 C T FAM193A Missense_Mutation p.S1144F 0.34 deleterious(0) probably_damaging(0.992) TCGA-90-A4ED-01 4 2749392 2749392 C T TNIP2 Missense_Mutation p.S186N 0.30 tolerated(0.17) benign(0.118) TCGA-90-A4ED-01 4 38776162 38776162 G A TLR10 Silent p.F350F 0.21 TCGA-90-A4ED-01 4 39408739 39408739 G A KLB Missense_Mutation p.G57E 0.22 deleterious(0) probably_damaging(0.988) TCGA-90-A4ED-01 4 42895452 42895452 G A GRXCR1 Missense_Mutation p.D57N 0.27 tolerated(0.23) benign(0.046) TCGA-90-A4ED-01 4 46334700 46334700 C T GABRA2 Splice_Site p.X63_splice 0.27 TCGA-90-A4ED-01 4 46737209 46737209 T G COX7B2 Translation_Start_Site p.M1? 0.14 tolerated(0.12) benign(0.277) TCGA-90-A4ED-01 4 47643984 47643984 G A CORIN Silent p.G717G 0.28 TCGA-90-A4ED-01 4 47682175 47682175 G A CORIN Missense_Mutation p.S372F 0.17 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 4 48178124 48178124 G A TEC Missense_Mutation p.P73L 0.17 deleterious(0.01) probably_damaging(1) TCGA-90-A4ED-01 4 48546015 48546015 C T FRYL Splice_Site p.X1801_splice 0.33 TCGA-90-A4ED-01 4 49009325 49009325 G A CWH43 Missense_Mutation p.E390K 0.35 tolerated(0.57) benign(0.01) TCGA-90-A4ED-01 4 55155180 55155180 G A PDGFRA Missense_Mutation p.E927K 0.21 deleterious(0.02) possibly_damaging(0.574) TCGA-90-A4ED-01 4 55597538 55597538 C T KIT Missense_Mutation p.S729F 0.25 deleterious(0.01) probably_damaging(0.992) TCGA-90-A4ED-01 4 55946082 55946082 G A KDR 3'UTR 0.26 TCGA-90-A4ED-01 4 56277808 56277808 C T TMEM165 Missense_Mutation p.H79Y 0.20 tolerated(0.05) benign(0.033) TCGA-90-A4ED-01 4 5862760 5862760 C T CRMP1 Silent p.T216T 0.24 TCGA-90-A4ED-01 4 6107269 6107269 G C JAKMIP1 Silent p.A185A 0.20 TCGA-90-A4ED-01 4 6331065 6331065 G A PPP2R2C Missense_Mutation p.R326W 0.17 deleterious(0) probably_damaging(0.996) TCGA-90-A4ED-01 4 6826341 6826341 C T KIAA0232 Missense_Mutation p.A54V 0.35 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 4 68610308 68610308 C T GNRHR Silent p.R240R 0.16 TCGA-90-A4ED-01 4 6862739 6862739 C T KIAA0232 Silent p.S210S 0.29 TCGA-90-A4ED-01 4 6864478 6864478 C T KIAA0232 Missense_Mutation p.S790F 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-90-A4ED-01 4 69513044 69513044 G A UGT2B15 Silent p.P457P 0.22 TCGA-90-A4ED-01 4 69681712 69681712 G A UGT2B10 5'UTR 0.19 TCGA-90-A4ED-01 4 69962349 69962349 G A UGT2B7 Missense_Mutation p.M37I 0.27 tolerated(1) benign(0.005) TCGA-90-A4ED-01 4 69973905 69973905 G A UGT2B7 Missense_Mutation p.G392E 0.24 deleterious(0) probably_damaging(0.988) TCGA-90-A4ED-01 4 70066236 70066236 C T UGT2B11 Silent p.V504V 0.23 TCGA-90-A4ED-01 4 7056698 7056698 C T TADA2B Missense_Mutation p.P394S 0.25 tolerated(0.11) benign(0.297) TCGA-90-A4ED-01 4 71510045 71510045 G A ENAM Missense_Mutation p.E968K 0.39 tolerated(0.17) benign(0.096) TCGA-90-A4ED-01 4 72316929 72316929 G A SLC4A4 Silent p.E411E 0.27 TCGA-90-A4ED-01 4 72338747 72338747 C T SLC4A4 Intron 0.23 TCGA-90-A4ED-01 4 72423559 72423559 G A SLC4A4 Nonsense_Mutation p.W965* 0.19 TCGA-90-A4ED-01 4 74283258 74283258 C T ALB Missense_Mutation p.R434C 0.33 deleterious(0.03) benign(0.388) TCGA-90-A4ED-01 4 74315828 74315828 G A AFP Missense_Mutation p.G423R 0.11 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 4 79369290 79369290 G A FRAS1 Missense_Mutation p.D2032N 0.24 possibly_damaging(0.718) TCGA-90-A4ED-01 4 80246498 80246498 C T NAA11 Silent p.Q178Q 0.16 TCGA-90-A4ED-01 4 80327898 80327898 C T GK2 Missense_Mutation p.R486Q 0.24 tolerated(0.18) benign(0.002) TCGA-90-A4ED-01 4 80328892 80328892 G A GK2 Missense_Mutation p.R155C 0.23 deleterious(0.01) benign(0.248) TCGA-90-A4ED-01 4 80828571 80828571 C T ANTXR2 3'UTR 0.26 TCGA-90-A4ED-01 4 80899161 80899161 C A ANTXR2 Missense_Mutation p.K449N 0.17 deleterious(0) probably_damaging(0.996) TCGA-90-A4ED-01 4 82013580 82013580 C T PRKG2 Missense_Mutation p.G718E 0.18 deleterious(0) possibly_damaging(0.543) TCGA-90-A4ED-01 4 8307921 8307921 C T HTRA3 3'UTR 0.44 TCGA-90-A4ED-01 4 84377180 84377180 G A MRPS18C 5'UTR 0.32 TCGA-90-A4ED-01 4 86985460 86985460 G A MAPK10 Missense_Mutation p.P357S 0.30 deleterious(0.02) possibly_damaging(0.629) TCGA-90-A4ED-01 4 877835 877835 G A GAK Silent p.S415S 0.30 TCGA-90-A4ED-01 4 88534234 88534234 C T DSPP Missense_Mutation p.S299L 0.27 probably_damaging(0.999) TCGA-90-A4ED-01 4 88755867 88755867 A C MEPE Translation_Start_Site p.M1? 0.22 deleterious(0) probably_damaging(0.986) TCGA-90-A4ED-01 4 890296 890296 G A GAK Silent p.I231I 0.09 TCGA-90-A4ED-01 4 89671766 89671766 G A FAM13A Silent p.S583S 0.20 TCGA-90-A4ED-01 4 89671767 89671767 G A FAM13A Missense_Mutation p.S583F 0.21 deleterious(0) benign(0.439) TCGA-90-A4ED-01 4 96256715 96256715 G A UNC5C Silent p.F64F 0.22 TCGA-90-A4ED-01 4 96761738 96761738 G A PDHA2 Missense_Mutation p.G146E 0.24 deleterious(0) probably_damaging(0.989) TCGA-90-A4ED-01 4 982941 982941 C T SLC26A1 Missense_Mutation p.V596I 0.35 tolerated(0.33) benign(0.02) TCGA-90-A4ED-01 5 108523217 108523217 C T FER Missense_Mutation p.R804C 0.32 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 5 110428012 110428012 G A WDR36 Missense_Mutation p.R9Q 0.23 deleterious_low_confidence(0) benign(0.002) TCGA-90-A4ED-01 5 110428013 110428013 G A WDR36 Silent p.R9R 0.24 TCGA-90-A4ED-01 5 112770186 112770186 G A TSSK1B Silent p.F117F 0.25 TCGA-90-A4ED-01 5 118485072 118485072 C T DMXL1 Missense_Mutation p.P1184S 0.26 tolerated(0.11) benign(0.034) TCGA-90-A4ED-01 5 118970284 118970284 G A FAM170A Missense_Mutation p.E281K 0.28 tolerated(0.15) benign(0.013) TCGA-90-A4ED-01 5 121187820 121187820 C T FTMT Silent p.S54S 0.31 TCGA-90-A4ED-01 5 122718532 122718532 G A CEP120 Missense_Mutation p.P638S 0.16 tolerated(0.39) benign(0.001) TCGA-90-A4ED-01 5 123984478 123984478 G A ZNF608 Silent p.T533T 0.34 TCGA-90-A4ED-01 5 125960381 125960381 C T PHAX Nonsense_Mutation p.Q344* 0.22 TCGA-90-A4ED-01 5 127518571 127518571 C T SLC12A2 Silent p.F1079F 0.17 TCGA-90-A4ED-01 5 127518572 127518572 C T SLC12A2 Missense_Mutation p.R1080W 0.18 deleterious(0) probably_damaging(0.973) TCGA-90-A4ED-01 5 130766835 130766835 G A RAPGEF6 Silent p.T1402T 0.23 TCGA-90-A4ED-01 5 131911514 131911514 C T RAD50 Missense_Mutation p.R87C 0.34 deleterious(0.01) benign(0.032) TCGA-90-A4ED-01 5 131925417 131925417 C T RAD50 Missense_Mutation p.S447L 0.34 tolerated(0.38) benign(0.001) TCGA-90-A4ED-01 5 133643961 133643961 G A CDKL3 Missense_Mutation p.P411L 0.14 tolerated(0.14) benign(0.003) TCGA-90-A4ED-01 5 134011777 134011777 C T SEC24A Missense_Mutation p.P406S 0.34 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 5 134086685 134086685 C T CAMLG 3'UTR 0.37 TCGA-90-A4ED-01 5 134210044 134210044 C T TXNDC15 5'UTR 0.42 TCGA-90-A4ED-01 5 13716656 13716656 A C DNAH5 Missense_Mutation p.F4283L 0.20 benign(0.418) TCGA-90-A4ED-01 5 13794109 13794109 C T DNAH5 Missense_Mutation p.G2649E 0.28 probably_damaging(0.982) TCGA-90-A4ED-01 5 1394763 1394763 C T SLC6A3 3'UTR 0.39 TCGA-90-A4ED-01 5 139751200 139751200 C T SLC4A9 Silent p.F911F 0.10 TCGA-90-A4ED-01 5 139889325 139889325 C T ANKHD1 Missense_Mutation p.S1290F 0.35 possibly_damaging(0.485) TCGA-90-A4ED-01 5 140070961 140070961 C T HARS 5'UTR 0.46 TCGA-90-A4ED-01 5 140175832 140175832 G A PCDHA2 Missense_Mutation p.R428Q 0.26 tolerated_low_confidence(0.13) benign(0.031) TCGA-90-A4ED-01 5 140188104 140188104 G A PCDHA4 Silent p.E444E 0.21 TCGA-90-A4ED-01 5 140201924 140201924 G A PCDHA5 Silent p.T188T 0.29 TCGA-90-A4ED-01 5 140207820 140207820 C T PCDHA6 Silent p.I48I 0.34 TCGA-90-A4ED-01 5 140208737 140208737 C T PCDHA6 Missense_Mutation p.S354F 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.487) TCGA-90-A4ED-01 5 140208824 140208824 G A PCDHA6 Missense_Mutation p.G383E 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-90-A4ED-01 5 140242835 140242835 C T AC005609.1 Silent p.S47S 0.41 TCGA-90-A4ED-01 5 140263676 140263676 C T PCDHA13 Missense_Mutation p.S608L 0.34 deleterious_low_confidence(0.01) benign(0.219) TCGA-90-A4ED-01 5 140475724 140475724 C T PCDHB2 Silent p.A450A 0.23 TCGA-90-A4ED-01 5 140503528 140503528 C T PCDHB4 Missense_Mutation p.P650S 0.33 deleterious_low_confidence(0.04) benign(0.363) TCGA-90-A4ED-01 5 140503529 140503529 C T PCDHB4 Missense_Mutation p.P650L 0.33 deleterious_low_confidence(0.01) benign(0.159) TCGA-90-A4ED-01 5 140515868 140515868 C T PCDHB5 Silent p.G284G 0.15 TCGA-90-A4ED-01 5 140530388 140530388 C T PCDHB6 Missense_Mutation p.R184C 0.24 deleterious(0.01) possibly_damaging(0.746) TCGA-90-A4ED-01 5 140553081 140553081 G A PCDHB7 Missense_Mutation p.R222K 0.21 tolerated_low_confidence(0.11) benign(0.046) TCGA-90-A4ED-01 5 140554089 140554089 C T PCDHB7 Missense_Mutation p.S558L 0.23 deleterious_low_confidence(0) benign(0.342) TCGA-90-A4ED-01 5 140554635 140554635 C T PCDHB7 Missense_Mutation p.T740I 0.10 deleterious_low_confidence(0) benign(0.192) TCGA-90-A4ED-01 5 140558442 140558442 G A PCDHB8 Missense_Mutation p.G276E 0.09 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-90-A4ED-01 5 140558982 140558982 C T PCDHB8 Missense_Mutation p.S456F 0.06 deleterious_low_confidence(0.01) benign(0.015) TCGA-90-A4ED-01 5 140559028 140559028 C T PCDHB8 Silent p.I471I 0.08 TCGA-90-A4ED-01 5 140588641 140588641 C T PCDHB12 Silent p.L54L 0.26 TCGA-90-A4ED-01 5 140604658 140604658 C T PCDHB14 Silent p.F527F 0.63 TCGA-90-A4ED-01 5 140724174 140724174 C T PCDHGA3 Missense_Mutation p.P192S 0.37 deleterious_low_confidence(0) possibly_damaging(0.692) TCGA-90-A4ED-01 5 140724175 140724175 C T PCDHGA3 Missense_Mutation p.P192L 0.37 deleterious_low_confidence(0) possibly_damaging(0.549) TCGA-90-A4ED-01 5 140736604 140736604 G A PCDHGA4 Missense_Mutation p.E613K 0.41 deleterious_low_confidence(0) probably_damaging(0.941) TCGA-90-A4ED-01 5 140752073 140752073 C T PCDHGB3 Silent p.L704L 0.31 TCGA-90-A4ED-01 5 140755365 140755365 C T PCDHGA6 Missense_Mutation p.S572F 0.26 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-90-A4ED-01 5 140764713 140764713 C T PCDHGA7 Silent p.F749F 0.34 TCGA-90-A4ED-01 5 140769575 140769575 C T PCDHGB4 Silent p.A708A 0.32 TCGA-90-A4ED-01 5 140794993 140794993 C T PCDHGA10 Missense_Mutation p.R751W 0.24 deleterious_low_confidence(0) benign(0.169) TCGA-90-A4ED-01 5 140802154 140802154 C T PCDHGA11 Missense_Mutation p.P454S 0.28 tolerated_low_confidence(0.89) benign(0.003) TCGA-90-A4ED-01 5 1443348 1443348 C T SLC6A3 5'UTR 0.38 TCGA-90-A4ED-01 5 14471449 14471449 C T TRIO Missense_Mutation p.S1929L 0.33 benign(0.006) TCGA-90-A4ED-01 5 145551507 145551507 G A LARS Missense_Mutation p.P87L 0.27 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 5 147928410 147928410 G A HTR4 Silent p.F58F 0.30 TCGA-90-A4ED-01 5 148407769 148407769 G A SH3TC2 Missense_Mutation p.A509V 0.38 tolerated(0.51) benign(0.003) TCGA-90-A4ED-01 5 148745671 148745671 C T PCYOX1L Silent p.L213L 0.20 TCGA-90-A4ED-01 5 149460479 149460479 G A CSF1R Missense_Mutation p.P53L 0.40 tolerated(0.13) possibly_damaging(0.713) TCGA-90-A4ED-01 5 149502728 149502728 C T PDGFRB Missense_Mutation p.G687E 0.25 tolerated(0.05) possibly_damaging(0.9) TCGA-90-A4ED-01 5 149773029 149773029 C T TCOF1 Missense_Mutation p.S1232F 0.46 deleterious(0.02) benign(0.236) TCGA-90-A4ED-01 5 150080667 150080667 C T RBM22 5'UTR 0.38 TCGA-90-A4ED-01 5 150441738 150441738 G A TNIP1 Missense_Mutation p.P103S 0.30 tolerated(0.31) benign(0.108) TCGA-90-A4ED-01 5 150514044 150514044 C T ANXA6 Missense_Mutation p.G164R 0.25 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 5 150723766 150723766 G A SLC36A2 Missense_Mutation p.P76L 0.22 deleterious(0.02) possibly_damaging(0.67) TCGA-90-A4ED-01 5 150867566 150867566 C T SLC36A1 Silent p.P394P 0.22 TCGA-90-A4ED-01 5 150922465 150922465 G A FAT2 Silent p.S2741S 0.14 TCGA-90-A4ED-01 5 150922621 150922621 C T FAT2 Silent p.P2689P 0.36 TCGA-90-A4ED-01 5 151179453 151179453 C T G3BP1 Missense_Mutation p.R283C 0.16 tolerated(0.09) benign(0) TCGA-90-A4ED-01 5 151235902 151235902 G A GLRA1 Silent p.F173F 0.33 TCGA-90-A4ED-01 5 153765885 153765885 G A GALNT10 Missense_Mutation p.M317I 0.25 deleterious(0) probably_damaging(0.995) TCGA-90-A4ED-01 5 154287201 154287201 C T GEMIN5 Missense_Mutation p.G782E 0.21 tolerated(0.57) benign(0.008) TCGA-90-A4ED-01 5 156482451 156482451 C T HAVCR1 Nonsense_Mutation p.W47* 0.23 TCGA-90-A4ED-01 5 156484947 156484947 G A HAVCR1 Missense_Mutation p.P3L 0.39 tolerated(0.37) unknown(0) TCGA-90-A4ED-01 5 156936351 156936351 T C ADAM19 Missense_Mutation p.K288R 0.21 deleterious(0.03) benign(0.299) TCGA-90-A4ED-01 5 158139169 158139169 G A EBF1 Silent p.P514P 0.26 TCGA-90-A4ED-01 5 158601149 158601149 G A RNF145 Silent p.G243G 0.29 TCGA-90-A4ED-01 5 159344373 159344373 C T ADRA1B Missense_Mutation p.P154L 0.34 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 5 160061449 160061449 G A ATP10B Silent p.F431F 0.26 TCGA-90-A4ED-01 5 160063278 160063278 G A ATP10B Missense_Mutation p.P347S 0.27 tolerated(0.48) possibly_damaging(0.732) TCGA-90-A4ED-01 5 161576193 161576193 G A GABRG2 Silent p.A374A 0.21 TCGA-90-A4ED-01 5 161578752 161578752 C T GABRG2 Missense_Mutation p.S422F 0.21 deleterious(0.01) benign(0.317) TCGA-90-A4ED-01 5 170319476 170319476 C T RANBP17 Silent p.I114I 0.29 TCGA-90-A4ED-01 5 170351548 170351548 C T RANBP17 Nonsense_Mutation p.Q488* 0.15 TCGA-90-A4ED-01 5 170669716 170669716 C T RANBP17 Missense_Mutation p.P890S 0.26 tolerated(1) benign(0.165) TCGA-90-A4ED-01 5 175933835 175933835 C T FAF2 Missense_Mutation p.P408S 0.35 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 5 176523709 176523709 G A FGFR4 Missense_Mutation p.R707Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 5 176523710 176523710 G A FGFR4 Silent p.R707R 0.31 TCGA-90-A4ED-01 5 176665273 176665273 C T NSD1 Silent p.A1319A 0.32 TCGA-90-A4ED-01 5 176665274 176665274 C T NSD1 Nonsense_Mutation p.R1320* 0.32 TCGA-90-A4ED-01 5 176721196 176721196 C T NSD1 Missense_Mutation p.P2276L 0.24 deleterious_low_confidence(0.04) benign(0.001) TCGA-90-A4ED-01 5 176730929 176730929 C T PRELID1 5'UTR 0.42 TCGA-90-A4ED-01 5 176938754 176938754 G A DDX41 3'UTR 0.19 TCGA-90-A4ED-01 5 178311296 178311296 C T ZNF354B 3'UTR 0.18 TCGA-90-A4ED-01 5 179743822 179743822 C T GFPT2 Missense_Mutation p.R365Q 0.17 tolerated(0.09) benign(0.017) TCGA-90-A4ED-01 5 1815962 1815962 C T NDUFS6 Intron 0.26 TCGA-90-A4ED-01 5 19473672 19473672 G A CDH18 Missense_Mutation p.P679L 0.35 tolerated(0.3) probably_damaging(0.999) TCGA-90-A4ED-01 5 19473803 19473803 G A CDH18 Silent p.T635T 0.28 TCGA-90-A4ED-01 5 21752002 21752002 C T CDH12 Silent p.G743G 0.33 TCGA-90-A4ED-01 5 21752003 21752003 C T CDH12 Missense_Mutation p.G743E 0.32 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 5 24487852 24487852 C - CDH10 Frame_Shift_Del p.D763Ifs*13 0.21 TCGA-90-A4ED-01 5 26886094 26886094 G A CDH9 Silent p.F537F 0.38 TCGA-90-A4ED-01 5 32093110 32093110 G A PDZD2 Missense_Mutation p.E2609K 0.39 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 5 32230407 32230407 G A MTMR12 Missense_Mutation p.P574L 0.25 tolerated(0.85) benign(0.378) TCGA-90-A4ED-01 5 32388780 32388780 G A ZFR Missense_Mutation p.P715S 0.28 tolerated(0.09) unknown(0) TCGA-90-A4ED-01 5 33549437 33549437 C T ADAMTS12 Missense_Mutation p.D1393N 0.32 deleterious(0.03) benign(0.376) TCGA-90-A4ED-01 5 35776376 35776376 C T SPEF2 Nonsense_Mutation p.R1366* 0.29 TCGA-90-A4ED-01 5 35876656 35876656 C T IL7R 3'UTR 0.24 TCGA-90-A4ED-01 5 35954366 35954366 C T UGT3A1 Missense_Mutation p.G504R 0.26 tolerated(0.42) benign(0.077) TCGA-90-A4ED-01 5 36049017 36049017 C T UGT3A2 Missense_Mutation p.E273K 0.25 tolerated(0.4) benign(0.216) TCGA-90-A4ED-01 5 36049382 36049382 G A UGT3A2 Missense_Mutation p.P151L 0.29 tolerated(0.37) benign(0.008) TCGA-90-A4ED-01 5 36265111 36265111 C T RANBP3L Missense_Mutation p.G169R 0.14 tolerated(0.19) benign(0.021) TCGA-90-A4ED-01 5 36958268 36958268 C T NIPBL Missense_Mutation p.A98V 0.22 deleterious(0.04) benign(0.092) TCGA-90-A4ED-01 5 37108562 37108562 G A C5orf42 Missense_Mutation p.P3084S 0.33 tolerated(0.18) benign(0.045) TCGA-90-A4ED-01 5 39002670 39002670 A C RICTOR Missense_Mutation p.V120G 0.43 deleterious(0) probably_damaging(0.982) TCGA-90-A4ED-01 5 39202741 39202741 C T FYB Missense_Mutation p.G118R 0.27 deleterious(0) probably_damaging(0.947) TCGA-90-A4ED-01 5 40958340 40958340 G A C7 Missense_Mutation p.G489E 0.23 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 5 41009397 41009397 C T MROH2B Silent p.R1135R 0.29 TCGA-90-A4ED-01 5 41176671 41176671 G A C6 Silent p.F358F 0.18 TCGA-90-A4ED-01 5 41382018 41382018 G A PLCXD3 Missense_Mutation p.S241L 0.30 deleterious(0.02) benign(0.075) TCGA-90-A4ED-01 5 41382463 41382463 G A PLCXD3 Missense_Mutation p.R93C 0.43 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 5 42711369 42711369 G A GHR Missense_Mutation p.E227K 0.26 deleterious(0.01) probably_damaging(0.957) TCGA-90-A4ED-01 5 43487068 43487068 G A C5orf34 Silent p.T622T 0.21 TCGA-90-A4ED-01 5 45262750 45262750 G A HCN1 Missense_Mutation p.S649F 0.33 tolerated(0.44) benign(0.054) TCGA-90-A4ED-01 5 52367836 52367836 C T ITGA2 Silent p.S768S 0.30 TCGA-90-A4ED-01 5 52367837 52367837 C T ITGA2 Missense_Mutation p.P769S 0.30 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 5 54326328 54326328 C A GZMK Silent p.S93S 0.36 TCGA-90-A4ED-01 5 66460222 66460222 C T MAST4 Nonsense_Mutation p.R1739* 0.26 TCGA-90-A4ED-01 5 6742692 6742692 C T PAPD7 Silent p.F116F 0.25 TCGA-90-A4ED-01 5 71756421 71756421 C T ZNF366 Silent p.L301L 0.35 TCGA-90-A4ED-01 5 72798834 72798834 C T BTF3 Missense_Mutation p.H137Y 0.29 deleterious(0.02) probably_damaging(0.934) TCGA-90-A4ED-01 5 76714123 76714123 G A PDE8B Missense_Mutation p.G661R 0.35 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 5 76729110 76729110 C T WDR41 Missense_Mutation p.M410I 0.24 deleterious(0.01) benign(0.363) TCGA-90-A4ED-01 5 89807869 89807869 G A POLR3G Splice_Site p.X196_splice 0.21 TCGA-90-A4ED-01 5 90021003 90021003 C T GPR98 Missense_Mutation p.S3336F 0.29 benign(0.01) TCGA-90-A4ED-01 5 90261279 90261279 G A GPR98 Silent p.E5968E 0.25 TCGA-90-A4ED-01 5 9119218 9119218 G A SEMA5A Missense_Mutation p.P606L 0.23 tolerated(0.48) probably_damaging(0.936) TCGA-90-A4ED-01 5 9119219 9119219 G A SEMA5A Missense_Mutation p.P606S 0.23 tolerated(0.53) probably_damaging(0.911) TCGA-90-A4ED-01 5 93076427 93076427 G A POU5F2 Silent p.A281A 0.31 TCGA-90-A4ED-01 5 96079355 96079355 T G CAST Intron 0.27 TCGA-90-A4ED-01 6 102247603 102247603 C T GRIK2 Silent p.S344S 0.22 TCGA-90-A4ED-01 6 105725981 105725981 G A PREP 3'UTR 0.30 TCGA-90-A4ED-01 6 10586243 10586243 C T GCNT2 Intron 0.28 TCGA-90-A4ED-01 6 106967942 106967942 C T AIM1 Silent p.V545V 0.35 TCGA-90-A4ED-01 6 107391965 107391965 G A BEND3 Missense_Mutation p.P144S 0.21 tolerated_low_confidence(0.11) benign(0.031) TCGA-90-A4ED-01 6 11185351 11185351 C T NEDD9 3'UTR 0.24 TCGA-90-A4ED-01 6 111995803 111995803 G A FYN Missense_Mutation p.P435L 0.29 deleterious(0.01) probably_damaging(1) TCGA-90-A4ED-01 6 112438963 112438963 C T LAMA4 Missense_Mutation p.E1654K 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-90-A4ED-01 6 112462047 112462047 C T LAMA4 Missense_Mutation p.G964E 0.24 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 6 116836833 116836833 G A FAM26E Missense_Mutation p.R204Q 0.28 tolerated(0.4) benign(0.039) TCGA-90-A4ED-01 6 119327690 119327690 G A FAM184A Silent p.S579S 0.26 TCGA-90-A4ED-01 6 123318888 123318888 G A CLVS2 5'UTR 0.33 TCGA-90-A4ED-01 6 127476429 127476429 G A RSPO3 Silent p.T160T 0.26 TCGA-90-A4ED-01 6 127611174 127611174 C T ECHDC1 Missense_Mutation p.G255E 0.21 deleterious(0.01) probably_damaging(0.937) TCGA-90-A4ED-01 6 127611175 127611175 C T ECHDC1 Missense_Mutation p.G255R 0.22 deleterious(0) possibly_damaging(0.665) TCGA-90-A4ED-01 6 130392197 130392197 T C L3MBTL3 Missense_Mutation p.V390A 0.37 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 6 131912487 131912487 G A MED23 Missense_Mutation p.H1218Y 0.26 deleterious(0) probably_damaging(0.954) TCGA-90-A4ED-01 6 132045200 132045200 G A ENPP3 Silent p.V589V 0.19 TCGA-90-A4ED-01 6 132061495 132061495 G A ENPP3 Missense_Mutation p.R811Q 0.32 deleterious(0.02) benign(0.274) TCGA-90-A4ED-01 6 132910326 132910326 G A TAAR5 Missense_Mutation p.S167L 0.36 tolerated(0.58) benign(0.183) TCGA-90-A4ED-01 6 132938516 132938516 G A TAAR2 Missense_Mutation p.P277S 0.17 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 6 132938619 132938619 G A TAAR2 Silent p.A242A 0.25 TCGA-90-A4ED-01 6 134350155 134350155 G A SLC2A12 Missense_Mutation p.R270C 0.25 deleterious(0.04) benign(0.052) TCGA-90-A4ED-01 6 135518186 135518186 C T MYB Silent p.L431L 0.24 TCGA-90-A4ED-01 6 136913321 136913321 G A MAP3K5 Missense_Mutation p.S1072F 0.23 tolerated(0.44) benign(0.368) TCGA-90-A4ED-01 6 138655346 138655346 C T KIAA1244 Missense_Mutation p.P1788L 0.21 deleterious(0) possibly_damaging(0.548) TCGA-90-A4ED-01 6 13978013 13978013 G A RNF182 Silent p.S221S 0.29 TCGA-90-A4ED-01 6 143074780 143074780 C T HIVEP2 Missense_Mutation p.E2269K 0.23 tolerated(0.08) benign(0.119) TCGA-90-A4ED-01 6 150239382 150239382 G A RAET1G Missense_Mutation p.S257F 0.26 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-90-A4ED-01 6 150290265 150290265 C T ULBP1 Missense_Mutation p.H132Y 0.28 deleterious(0.01) benign(0.149) TCGA-90-A4ED-01 6 150690278 150690278 G A IYD Silent p.R37R 0.21 TCGA-90-A4ED-01 6 152647490 152647490 C T SYNE1 Silent p.L5078L 0.23 TCGA-90-A4ED-01 6 152716670 152716670 C T SYNE1 Missense_Mutation p.G2565R 0.25 benign(0.096) TCGA-90-A4ED-01 6 152720835 152720835 G A SYNE1 Silent p.L2385L 0.31 TCGA-90-A4ED-01 6 152819893 152819893 G A SYNE1 Missense_Mutation p.S308F 0.28 benign(0.003) TCGA-90-A4ED-01 6 153043177 153043177 C G MYCT1 Missense_Mutation p.T166S 0.18 deleterious(0.02) probably_damaging(0.997) TCGA-90-A4ED-01 6 153043186 153043186 C T MYCT1 Missense_Mutation p.P169L 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-90-A4ED-01 6 154412119 154412119 C T OPRM1 Missense_Mutation p.P319S 0.28 deleterious(0.01) probably_damaging(0.972) TCGA-90-A4ED-01 6 159461846 159461846 G A TAGAP Missense_Mutation p.P166S 0.38 deleterious(0) probably_damaging(0.996) TCGA-90-A4ED-01 6 160638506 160638506 C T SLC22A2 Missense_Mutation p.M542I 0.21 tolerated(0.23) benign(0.001) TCGA-90-A4ED-01 6 160829813 160829813 G A SLC22A3 Silent p.R239R 0.27 TCGA-90-A4ED-01 6 160953631 160953631 T A LPA Missense_Mutation p.N1965Y 0.29 deleterious(0) possibly_damaging(0.487) TCGA-90-A4ED-01 6 160953632 160953632 C T LPA Silent p.E1964E 0.29 TCGA-90-A4ED-01 6 161127510 161127510 C T PLG Silent p.L41L 0.31 TCGA-90-A4ED-01 6 16327638 16327638 G A ATXN1 Missense_Mutation p.P302S 0.32 tolerated(0.17) benign(0.075) TCGA-90-A4ED-01 6 166921730 166921730 G A RPS6KA2 Silent p.F148F 0.31 TCGA-90-A4ED-01 6 167592026 167592026 G A TCP10L2 Missense_Mutation p.G218E 0.27 tolerated(1) benign(0.389) TCGA-90-A4ED-01 6 169648721 169648721 G A THBS2 Missense_Mutation p.R134W 0.28 deleterious(0.01) benign(0.339) TCGA-90-A4ED-01 6 169648722 169648722 G A THBS2 Silent p.T133T 0.28 TCGA-90-A4ED-01 6 170143247 170143247 C T TCTE3 Missense_Mutation p.E139K 0.22 deleterious(0.04) possibly_damaging(0.579) TCGA-90-A4ED-01 6 24475367 24475367 G A GPLD1 Silent p.F141F 0.25 TCGA-90-A4ED-01 6 24489740 24489740 G A GPLD1 5'UTR 0.40 TCGA-90-A4ED-01 6 25862525 25862525 G A SLC17A3 Missense_Mutation p.S80F 0.41 deleterious(0.01) benign(0.021) TCGA-90-A4ED-01 6 26247206 26247206 G A HIST1H4G 5'UTR 0.23 TCGA-90-A4ED-01 6 26406211 26406211 C T BTN3A1 Silent p.L54L 0.35 TCGA-90-A4ED-01 6 26505265 26505265 C T BTN1A1 Silent p.S180S 0.32 TCGA-90-A4ED-01 6 27420536 27420536 G A ZNF184 Missense_Mutation p.H268Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 6 28097255 28097255 A G ZSCAN16 Missense_Mutation p.M192V 0.36 tolerated(0.54) benign(0) TCGA-90-A4ED-01 6 29323292 29323292 C T OR5V1 Silent p.R227R 0.21 TCGA-90-A4ED-01 6 29364563 29364563 C T OR12D2 Silent p.F29F 0.31 TCGA-90-A4ED-01 6 29641035 29641035 C T ZFP57 Missense_Mutation p.E285K 0.24 tolerated(0.3) benign(0.07) TCGA-90-A4ED-01 6 30615107 30615107 G A C6orf136 Silent p.R33R 0.39 TCGA-90-A4ED-01 6 30680004 30680004 G A MDC1 Missense_Mutation p.P572L 0.29 deleterious(0) probably_damaging(0.994) TCGA-90-A4ED-01 6 3105865 3105865 C T RIPK1 Missense_Mutation p.L386F 0.31 tolerated(0.35) possibly_damaging(0.474) TCGA-90-A4ED-01 6 31525501 31525501 G A NFKBIL1 Nonsense_Mutation p.W144* 0.40 TCGA-90-A4ED-01 6 31604559 31604559 C T PRRC2A Missense_Mutation p.S1995F 0.26 unknown(0) TCGA-90-A4ED-01 6 31604560 31604560 C T PRRC2A Silent p.S1995S 0.26 TCGA-90-A4ED-01 6 31609990 31609990 G A BAG6 Missense_Mutation p.S715F 0.36 deleterious(0) probably_damaging(0.982) TCGA-90-A4ED-01 6 31748259 31748259 G A VARS Missense_Mutation p.R962C 0.30 tolerated(0.18) possibly_damaging(0.676) TCGA-90-A4ED-01 6 32037905 32037905 C T TNXB Silent p.T1759T 0.33 TCGA-90-A4ED-01 6 32049968 32049968 C T RNA5SP206 5'Flank 0.31 TCGA-90-A4ED-01 6 32122475 32122475 C T PPT2 Missense_Mutation p.S41F 0.25 tolerated(0.07) possibly_damaging(0.662) TCGA-90-A4ED-01 6 32122476 32122476 C T PPT2 Silent p.S41S 0.23 TCGA-90-A4ED-01 6 32147869 32147869 C T RNF5 Silent p.V137V 0.27 TCGA-90-A4ED-01 6 32184980 32184980 C T NOTCH4 Missense_Mutation p.G563D 0.19 deleterious(0.01) probably_damaging(0.947) TCGA-90-A4ED-01 6 3284208 3284208 C T SLC22A23 Silent p.G527G 0.24 TCGA-90-A4ED-01 6 3284209 3284209 C T SLC22A23 Missense_Mutation p.G527E 0.24 tolerated(0.21) benign(0.261) TCGA-90-A4ED-01 6 32916510 32916510 C T HLA-DMA 3'UTR 0.45 TCGA-90-A4ED-01 6 32942522 32942522 G T BRD2 Missense_Mutation p.A105S 0.40 deleterious(0.01) probably_damaging(0.967) TCGA-90-A4ED-01 6 33141310 33141310 G A COL11A2 Missense_Mutation p.P798L 0.20 possibly_damaging(0.851) TCGA-90-A4ED-01 6 33148462 33148462 C T COL11A2 Missense_Mutation p.G337R 0.14 probably_damaging(0.979) TCGA-90-A4ED-01 6 33244205 33244205 C A RPS18 Missense_Mutation p.R141S 0.35 deleterious(0) unknown(0) TCGA-90-A4ED-01 6 33290748 33290748 C T DAXX 5'UTR 0.52 TCGA-90-A4ED-01 6 33652230 33652230 G A ITPR3 Silent p.K1678K 0.16 TCGA-90-A4ED-01 6 348853 348853 G A DUSP22 Intron 0.07 TCGA-90-A4ED-01 6 35260388 35260388 C T ZNF76 Missense_Mutation p.S330L 0.16 deleterious(0) possibly_damaging(0.877) TCGA-90-A4ED-01 6 36709963 36709963 C A CPNE5 3'UTR 0.18 TCGA-90-A4ED-01 6 36981517 36981517 C T FGD2 Silent p.F220F 0.25 TCGA-90-A4ED-01 6 3850109 3850109 G A FAM50B Missense_Mutation p.E22K 0.29 tolerated(0.13) benign(0.195) TCGA-90-A4ED-01 6 38649845 38649845 T A GLO1 Missense_Mutation p.S137C 0.27 deleterious(0) possibly_damaging(0.532) TCGA-90-A4ED-01 6 39159147 39159147 G A KCNK5 Missense_Mutation p.S340F 0.25 deleterious(0.01) benign(0.129) TCGA-90-A4ED-01 6 39847152 39847152 C T DAAM2 Missense_Mutation p.P582S 0.32 tolerated(0.26) benign(0) TCGA-90-A4ED-01 6 40400737 40400737 G A LRFN2 Missense_Mutation p.P39L 0.29 deleterious(0.04) possibly_damaging(0.459) TCGA-90-A4ED-01 6 4069350 4069350 C T FAM217A Silent p.R369R 0.29 TCGA-90-A4ED-01 6 41065218 41065218 C T NFYA 3'UTR 0.26 TCGA-90-A4ED-01 6 41117418 41117418 G A TREML1 Missense_Mutation p.P287L 0.40 tolerated(0.13) benign(0.192) TCGA-90-A4ED-01 6 41566714 41566714 C T FOXP4 3'UTR 0.50 TCGA-90-A4ED-01 6 41875012 41875012 G A MED20 Missense_Mutation p.P146L 0.39 deleterious(0) probably_damaging(0.949) TCGA-90-A4ED-01 6 44221279 44221279 G A HSP90AB1 Missense_Mutation p.E707K 0.33 deleterious(0.04) benign(0.004) TCGA-90-A4ED-01 6 44253871 44253871 C T TCTE1 Missense_Mutation p.D226N 0.25 tolerated(0.07) benign(0.12) TCGA-90-A4ED-01 6 44268300 44268300 G A AARS2 Missense_Mutation p.A981V 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-90-A4ED-01 6 46214490 46214490 C T RCAN2 Missense_Mutation p.G189E 0.34 deleterious(0) probably_damaging(0.995) TCGA-90-A4ED-01 6 46657896 46657896 C T TDRD6 Silent p.I677I 0.33 TCGA-90-A4ED-01 6 46824637 46824637 G A GPR116 Silent p.F1261F 0.37 TCGA-90-A4ED-01 6 46830808 46830808 G A GPR116 Silent p.P672P 0.32 TCGA-90-A4ED-01 6 46977383 46977383 G A GPR110 Silent p.S596S 0.26 TCGA-90-A4ED-01 6 47574012 47574012 C T CD2AP Missense_Mutation p.S510F 0.19 deleterious(0) probably_damaging(0.95) TCGA-90-A4ED-01 6 47646735 47646735 C T GPR111 Silent p.V112V 0.32 TCGA-90-A4ED-01 6 47682613 47682613 G A GPR115 Missense_Mutation p.M544I 0.28 tolerated(0.18) benign(0.003) TCGA-90-A4ED-01 6 47682871 47682871 C T GPR115 Silent p.S630S 0.27 TCGA-90-A4ED-01 6 47976566 47976566 G A PTCHD4 Silent p.V237V 0.30 TCGA-90-A4ED-01 6 51774190 51774190 G A PKHD1 Silent p.S2191S 0.23 TCGA-90-A4ED-01 6 51774199 51774199 G A PKHD1 Silent p.I2188I 0.35 TCGA-90-A4ED-01 6 52052459 52052459 G A IL17A Missense_Mutation p.R29Q 0.29 tolerated(1) benign(0.001) TCGA-90-A4ED-01 6 54173353 54173353 G A TINAG Nonsense_Mutation p.W2* 0.37 TCGA-90-A4ED-01 6 54214631 54214631 C T TINAG Silent p.P339P 0.44 TCGA-90-A4ED-01 6 54792393 54792393 T C FAM83B Silent p.L233L 0.32 TCGA-90-A4ED-01 6 619491 619491 C T EXOC2 Missense_Mutation p.D159N 0.24 tolerated(0.43) probably_damaging(0.956) TCGA-90-A4ED-01 6 6196094 6196094 G A F13A1 Missense_Mutation p.S414L 0.19 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 6 6196108 6196108 C T F13A1 Silent p.R409R 0.33 TCGA-90-A4ED-01 6 656312 656312 G A HUS1B Silent p.P211P 0.28 TCGA-90-A4ED-01 6 69653753 69653753 G A BAI3 Nonsense_Mutation p.W354* 0.33 TCGA-90-A4ED-01 6 70859777 70859777 C T COL19A1 Missense_Mutation p.P655L 0.25 deleterious(0.01) probably_damaging(0.967) TCGA-90-A4ED-01 6 70972979 70972979 C T COL9A1 Missense_Mutation p.E455K 0.18 possibly_damaging(0.725) TCGA-90-A4ED-01 6 71010084 71010084 G A COL9A1 Missense_Mutation p.P32S 0.39 unknown(0) TCGA-90-A4ED-01 6 7230991 7230991 G A RREB1 Missense_Mutation p.E887K 0.28 deleterious(0) benign(0.395) TCGA-90-A4ED-01 6 72968715 72968715 G A RIMS1 Missense_Mutation p.R985K 0.30 deleterious(0.01) probably_damaging(0.983) TCGA-90-A4ED-01 6 74079008 74079008 G A OOEP Silent p.F97F 0.23 TCGA-90-A4ED-01 6 74155407 74155407 C T MB21D1 Missense_Mutation p.E241K 0.31 deleterious(0.03) possibly_damaging(0.838) TCGA-90-A4ED-01 6 74513010 74513010 T G CD109 Silent p.P982P 0.23 TCGA-90-A4ED-01 6 76731840 76731840 G A IMPG1 Missense_Mutation p.P220L 0.11 tolerated(0.07) benign(0.132) TCGA-90-A4ED-01 6 83732256 83732256 G A UBE3D Silent p.I254I 0.29 TCGA-90-A4ED-01 6 83861311 83861311 G A DOPEY1 Splice_Site p.X1946_splice 0.19 TCGA-90-A4ED-01 6 83926282 83926282 C T ME1 Missense_Mutation p.E495K 0.35 tolerated(0.27) benign(0.006) TCGA-90-A4ED-01 6 85446817 85446817 C T TBX18 Missense_Mutation p.M470I 0.22 tolerated(0.33) benign(0.001) TCGA-90-A4ED-01 6 85472326 85472326 C T TBX18 Missense_Mutation p.G145R 0.28 deleterious(0.01) probably_damaging(1) TCGA-90-A4ED-01 6 89808415 89808415 G A SRSF12 Missense_Mutation p.S223F 0.30 deleterious_low_confidence(0) possibly_damaging(0.831) TCGA-90-A4ED-01 6 89827624 89827624 C T SRSF12 5'UTR 0.19 TCGA-90-A4ED-01 6 93969189 93969189 G A EPHA7 Missense_Mutation p.P603S 0.32 tolerated(0.06) possibly_damaging(0.685) TCGA-90-A4ED-01 7 100061610 100061610 C T C7orf61 Silent p.R13R 0.18 TCGA-90-A4ED-01 7 100084717 100084717 C T NYAP1 Silent p.P114P 0.51 TCGA-90-A4ED-01 7 100218582 100218582 C T TFR2 Silent p.Q768Q 0.13 TCGA-90-A4ED-01 7 100246272 100246272 G A ACTL6B Silent p.S192S 0.38 TCGA-90-A4ED-01 7 100549621 100549621 C T MUC3A Missense_Mutation p.P68S 0.08 deleterious(0.01) unknown(0) TCGA-90-A4ED-01 7 100686443 100686443 C T MUC17 Missense_Mutation p.P3916S 0.41 benign(0) TCGA-90-A4ED-01 7 100773715 100773715 C T SERPINE1 Silent p.A95A 0.23 TCGA-90-A4ED-01 7 101821879 101821879 C T CUX1 Missense_Mutation p.S331L 0.31 deleterious(0) unknown(0) TCGA-90-A4ED-01 7 101845188 101845188 C T CUX1 Nonsense_Mutation p.Q882* 0.37 TCGA-90-A4ED-01 7 103130324 103130324 G A RELN Nonsense_Mutation p.Q3210* 0.42 TCGA-90-A4ED-01 7 103155801 103155801 C T RELN Silent p.Q2650Q 0.21 TCGA-90-A4ED-01 7 103234902 103234902 G T RELN Missense_Mutation p.P1193T 0.40 tolerated(0.19) benign(0.089) TCGA-90-A4ED-01 7 103275927 103275927 C T RELN Missense_Mutation p.G804R 0.20 deleterious(0) probably_damaging(0.941) TCGA-90-A4ED-01 7 103292108 103292108 C T RELN Missense_Mutation p.G631E 0.16 tolerated(0.07) probably_damaging(1) TCGA-90-A4ED-01 7 107399222 107399222 C T CBLL1 Missense_Mutation p.P359S 0.23 tolerated(0.36) probably_damaging(0.991) TCGA-90-A4ED-01 7 110764077 110764077 G A LRRN3 Missense_Mutation p.E417K 0.29 deleterious(0.04) possibly_damaging(0.619) TCGA-90-A4ED-01 7 112424833 112424833 T A TMEM168 Silent p.A16A 0.26 TCGA-90-A4ED-01 7 113518156 113518156 G A PPP1R3A Silent p.F997F 0.38 TCGA-90-A4ED-01 7 113518383 113518383 C T PPP1R3A Missense_Mutation p.E922K 0.36 tolerated(1) benign(0) TCGA-90-A4ED-01 7 113519928 113519928 C T PPP1R3A Missense_Mutation p.E407K 0.30 tolerated(0.21) benign(0.03) TCGA-90-A4ED-01 7 11501710 11501710 C T THSD7A Missense_Mutation p.G810E 0.34 deleterious(0.03) possibly_damaging(0.745) TCGA-90-A4ED-01 7 11676333 11676333 C T THSD7A Missense_Mutation p.G149E 0.18 deleterious(0) probably_damaging(0.971) TCGA-90-A4ED-01 7 11676334 11676334 C T THSD7A Missense_Mutation p.G149R 0.18 deleterious(0) possibly_damaging(0.78) TCGA-90-A4ED-01 7 117368187 117368187 G A CTTNBP2 Silent p.F1337F 0.45 TCGA-90-A4ED-01 7 120776102 120776102 C T CPED1 Missense_Mutation p.P553S 0.16 tolerated(0.1) benign(0.033) TCGA-90-A4ED-01 7 122114495 122114495 A G CADPS2 Silent p.L646L 0.19 TCGA-90-A4ED-01 7 123594211 123594211 G A SPAM1 Missense_Mutation p.G196E 0.33 deleterious(0) probably_damaging(0.969) TCGA-90-A4ED-01 7 123599877 123599877 G A SPAM1 Missense_Mutation p.G462S 0.32 tolerated(0.13) benign(0.024) TCGA-90-A4ED-01 7 126086295 126086295 C T GRM8 Silent p.R854R 0.23 TCGA-90-A4ED-01 7 126173776 126173776 C T GRM8 Missense_Mutation p.E554K 0.28 tolerated(1) possibly_damaging(0.676) TCGA-90-A4ED-01 7 126698209 126698209 C T GRM8 Intron 0.18 TCGA-90-A4ED-01 7 127255409 127255409 C T PAX4 Intron 0.28 TCGA-90-A4ED-01 7 128486405 128486405 C T FLNC Missense_Mutation p.P1339S 0.37 deleterious(0.01) probably_damaging(1) TCGA-90-A4ED-01 7 128491651 128491651 C T FLNC Silent p.I1937I 0.33 TCGA-90-A4ED-01 7 128498400 128498400 G A FLNC Missense_Mutation p.M2667I 0.32 deleterious(0.02) benign(0.213) TCGA-90-A4ED-01 7 129662204 129662204 G A ZC3HC1 Silent p.L465L 0.31 TCGA-90-A4ED-01 7 132193243 132193243 C T PLXNA4 Silent p.R70R 0.11 TCGA-90-A4ED-01 7 134346473 134346473 G A BPGM Missense_Mutation p.E72K 0.24 tolerated(0.12) possibly_damaging(0.617) TCGA-90-A4ED-01 7 134625896 134625896 C T CALD1 Silent p.S480S 0.42 TCGA-90-A4ED-01 7 134851488 134851488 C T C7orf49 Missense_Mutation p.A117T 0.35 tolerated(0.24) benign(0.007) TCGA-90-A4ED-01 7 134880910 134880910 G A WDR91 Silent p.S410S 0.31 TCGA-90-A4ED-01 7 137782687 137782687 G A AKR1D1 Missense_Mutation p.E152K 0.29 deleterious(0.04) possibly_damaging(0.818) TCGA-90-A4ED-01 7 138313015 138313015 C T SVOPL Silent p.A319A 0.17 TCGA-90-A4ED-01 7 139138439 139138439 C T KLRG2 Missense_Mutation p.G375D 0.10 tolerated(0.83) benign(0.002) TCGA-90-A4ED-01 7 140244461 140244461 G A DENND2A Silent p.L762L 0.24 TCGA-90-A4ED-01 7 140434525 140434525 G A BRAF Missense_Mutation p.H725Y 0.27 deleterious(0) possibly_damaging(0.78) TCGA-90-A4ED-01 7 141740557 141740557 G A MGAM Silent p.E803E 0.29 TCGA-90-A4ED-01 7 141795478 141795478 G A MGAM Silent p.T1628T 0.21 TCGA-90-A4ED-01 7 141955427 141955427 G A PRSS58 Missense_Mutation p.S36F 0.24 deleterious(0.01) probably_damaging(1) TCGA-90-A4ED-01 7 142099482 142099482 G A TRBV7-8 Missense_Mutation p.A107V 0.20 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 7 142364197 142364197 C T TRBV24-1 5'Flank 0.57 TCGA-90-A4ED-01 7 142499007 142499007 G A TRBC2 Missense_Mutation p.R95H 0.16 deleterious(0) probably_damaging(0.973) TCGA-90-A4ED-01 7 142499083 142499083 C T TRBC2 Silent p.I120I 0.22 TCGA-90-A4ED-01 7 142649667 142649667 C T KEL Missense_Mutation p.D378N 0.39 deleterious(0.03) possibly_damaging(0.777) TCGA-90-A4ED-01 7 142983977 142983977 A G TMEM139 3'UTR 0.25 TCGA-90-A4ED-01 7 143013308 143013308 G A CLCN1 Translation_Start_Site p.M1? 0.19 deleterious_low_confidence(0) unknown(0) TCGA-90-A4ED-01 7 143140880 143140880 C T TAS2R60 Missense_Mutation p.T112I 0.24 deleterious(0) possibly_damaging(0.798) TCGA-90-A4ED-01 7 143826706 143826706 C T OR2A14 Silent p.F167F 0.31 TCGA-90-A4ED-01 7 143955924 143955924 G A OR2A7 Silent p.P266P 0.15 TCGA-90-A4ED-01 7 148802412 148802412 G A ZNF425 Missense_Mutation p.P184L 0.22 tolerated(0.47) benign(0.004) TCGA-90-A4ED-01 7 149493752 149493752 G A SSPO RNA 0.19 TCGA-90-A4ED-01 7 149498942 149498942 C T SSPO RNA 0.44 TCGA-90-A4ED-01 7 149518958 149518958 G A SSPO RNA 0.23 TCGA-90-A4ED-01 7 150418033 150418033 G T GIMAP1 3'UTR 0.31 TCGA-90-A4ED-01 7 150488585 150488585 G A TMEM176B 3'UTR 0.23 TCGA-90-A4ED-01 7 150558208 150558208 C T AOC1 Missense_Mutation p.P723S 0.31 tolerated(0.82) benign(0.001) TCGA-90-A4ED-01 7 150645974 150645974 G A KCNH2 Silent p.S854S 0.23 TCGA-90-A4ED-01 7 150710934 150710934 C T NOS3 Silent p.T1126T 0.21 TCGA-90-A4ED-01 7 150762035 150762035 C T SLC4A2 Missense_Mutation p.S187F 0.21 deleterious_low_confidence(0.01) benign(0.015) TCGA-90-A4ED-01 7 151093101 151093101 C T WDR86 Missense_Mutation p.G163R 0.29 tolerated(0.27) benign(0.037) TCGA-90-A4ED-01 7 151949698 151949698 G A KMT2C Missense_Mutation p.P468S 0.26 probably_damaging(0.999) TCGA-90-A4ED-01 7 152140042 152140042 C T AC005631.1 3'Flank 0.53 TCGA-90-A4ED-01 7 155093993 155093993 C T INSIG1 Silent p.S190S 0.13 TCGA-90-A4ED-01 7 155100217 155100217 C T INSIG1 3'UTR 0.46 TCGA-90-A4ED-01 7 15652162 15652162 C T MEOX2 Silent p.R255R 0.19 TCGA-90-A4ED-01 7 15725527 15725527 C T MEOX2 Silent p.R167R 0.22 TCGA-90-A4ED-01 7 157931073 157931073 G A PTPRN2 Nonsense_Mutation p.R349* 0.40 TCGA-90-A4ED-01 7 158531776 158531776 G A ESYT2 Silent p.I762I 0.38 TCGA-90-A4ED-01 7 18066551 18066551 G A PRPS1L1 Silent p.S285S 0.24 TCGA-90-A4ED-01 7 18788643 18788643 C T HDAC9 Missense_Mutation p.P642L 0.12 deleterious(0) benign(0.022) TCGA-90-A4ED-01 7 21640673 21640673 G A DNAH11 Missense_Mutation p.D1101N 0.30 probably_damaging(0.956) TCGA-90-A4ED-01 7 21750215 21750215 G A DNAH11 Missense_Mutation p.R2250Q 0.29 probably_damaging(0.994) TCGA-90-A4ED-01 7 2269659 2269659 G A MAD1L1 Missense_Mutation p.A37V 0.24 tolerated(0.34) benign(0.033) TCGA-90-A4ED-01 7 23221592 23221592 G A NUPL2 5'UTR 0.47 TCGA-90-A4ED-01 7 2473051 2473051 C T CHST12 Silent p.F259F 0.35 TCGA-90-A4ED-01 7 2608628 2608628 C T IQCE Missense_Mutation p.S42L 0.30 deleterious(0.01) probably_damaging(0.916) TCGA-90-A4ED-01 7 2638163 2638163 C T IQCE Missense_Mutation p.S502F 0.28 tolerated(0.1) benign(0.013) TCGA-90-A4ED-01 7 2645596 2645596 C T IQCE Silent p.S610S 0.41 TCGA-90-A4ED-01 7 27140954 27140954 C T HOXA2 Silent p.V174V 0.33 TCGA-90-A4ED-01 7 27147635 27147635 C T HOXA3 Missense_Mutation p.G411R 0.38 tolerated(0.06) probably_damaging(0.995) TCGA-90-A4ED-01 7 29070293 29070293 C T CPVL Missense_Mutation p.G407E 0.25 deleterious(0.02) probably_damaging(0.975) TCGA-90-A4ED-01 7 29070304 29070304 C T CPVL Missense_Mutation p.M403I 0.36 tolerated(0.16) benign(0.022) TCGA-90-A4ED-01 7 2959062 2959062 C T CARD11 Silent p.R818R 0.39 TCGA-90-A4ED-01 7 2962857 2962857 C T CARD11 Missense_Mutation p.G684E 0.23 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 7 2962858 2962858 C T CARD11 Missense_Mutation p.G684R 0.23 deleterious(0.02) probably_damaging(1) TCGA-90-A4ED-01 7 2976719 2976719 C T CARD11 Silent p.L431L 0.30 TCGA-90-A4ED-01 7 2998192 2998192 C T CARD11 5'UTR 0.40 TCGA-90-A4ED-01 7 30185857 30185857 C T MTURN Missense_Mutation p.S76F 0.33 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-90-A4ED-01 7 31614331 31614331 G A CCDC129 Missense_Mutation p.M217I 0.31 deleterious(0.04) possibly_damaging(0.58) TCGA-90-A4ED-01 7 34192733 34192733 G A BMPER Missense_Mutation p.D636N 0.22 deleterious(0.05) possibly_damaging(0.824) TCGA-90-A4ED-01 7 34724180 34724180 C T NPSR1 Missense_Mutation p.T55I 0.30 tolerated(0.82) possibly_damaging(0.891) TCGA-90-A4ED-01 7 38402682 38402682 C T TRGV2 Missense_Mutation p.G46E 0.19 tolerated(1) benign(0.003) TCGA-90-A4ED-01 7 38501002 38501002 C T AMPH Missense_Mutation p.G300R 0.28 deleterious(0.02) probably_damaging(1) TCGA-90-A4ED-01 7 42005398 42005398 G A GLI3 Silent p.F1091F 0.30 TCGA-90-A4ED-01 7 44179398 44179398 C T MYL7 Silent p.G120G 0.30 TCGA-90-A4ED-01 7 44561376 44561377 - GGGTCA NPC1L1 In_Frame_Ins p.L961_T962dup 0.29 TCGA-90-A4ED-01 7 44796636 44796636 C T ZMIZ2 Missense_Mutation p.P86S 0.34 tolerated_low_confidence(0.14) benign(0.039) TCGA-90-A4ED-01 7 45632360 45632360 C T ADCY1 Silent p.L214L 0.27 TCGA-90-A4ED-01 7 47317663 47317663 G A TNS3 3'UTR 0.20 TCGA-90-A4ED-01 7 47384578 47384578 C T TNS3 Missense_Mutation p.S837N 0.05 tolerated(0.1) benign(0.003) TCGA-90-A4ED-01 7 47876528 47876528 C T PKD1L1 Silent p.G1978G 0.25 TCGA-90-A4ED-01 7 47897395 47897395 C T PKD1L1 Silent p.Q1466Q 0.30 TCGA-90-A4ED-01 7 48318354 48318354 C T ABCA13 Silent p.S2521S 0.28 TCGA-90-A4ED-01 7 4876145 4876145 G A RADIL Silent p.P209P 0.35 TCGA-90-A4ED-01 7 50367321 50367321 G A IKZF1 Missense_Mutation p.G43E 0.14 deleterious(0.02) benign(0.127) TCGA-90-A4ED-01 7 5104812 5104812 C T RBAK Silent p.T575T 0.31 TCGA-90-A4ED-01 7 51094346 51094346 C T COBL Missense_Mutation p.G1134E 0.34 tolerated(0.63) benign(0.109) TCGA-90-A4ED-01 7 53104325 53104325 C A POM121L12 3'UTR 0.32 TCGA-90-A4ED-01 7 5567494 5567494 G A ACTB Missense_Mutation p.S338F 0.23 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-90-A4ED-01 7 56174183 56174183 G A CHCHD2 5'UTR 0.24 TCGA-90-A4ED-01 7 57528636 57528636 T A ZNF716 Missense_Mutation p.F157I 0.37 deleterious(0.03) probably_damaging(0.996) TCGA-90-A4ED-01 7 5760769 5760769 A T RNF216 Silent p.L513L 0.44 TCGA-90-A4ED-01 7 5780765 5780765 G A RNF216 Missense_Mutation p.P295S 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.88) TCGA-90-A4ED-01 7 64292614 64292614 G A ZNF138 3'UTR 0.18 TCGA-90-A4ED-01 7 65706217 65706217 G A TPST1 Missense_Mutation p.E269K 0.27 deleterious(0) probably_damaging(0.922) TCGA-90-A4ED-01 7 71177101 71177101 G A WBSCR17 Silent p.Q589Q 0.27 TCGA-90-A4ED-01 7 71252862 71252862 C T CALN1 Silent p.Q228Q 0.21 TCGA-90-A4ED-01 7 72398985 72398985 C T POM121 Missense_Mutation p.P97L 0.24 tolerated(0.39) probably_damaging(0.992) TCGA-90-A4ED-01 7 74564649 74564649 C A GTF2IRD2B Missense_Mutation p.T799K 0.30 tolerated(0.3) benign(0.001) TCGA-90-A4ED-01 7 75441265 75441265 C T CCL24 Missense_Mutation p.G70D 0.39 deleterious(0.01) possibly_damaging(0.482) TCGA-90-A4ED-01 7 75517657 75517657 C T RHBDD2 Missense_Mutation p.P362L 0.46 tolerated_low_confidence(0.31) benign(0.001) TCGA-90-A4ED-01 7 78131063 78131063 C T MAGI2 Missense_Mutation p.E266K 0.37 tolerated(0.42) possibly_damaging(0.507) TCGA-90-A4ED-01 7 81334723 81334723 C T HGF Missense_Mutation p.G665R 0.28 deleterious(0.01) benign(0.127) TCGA-90-A4ED-01 7 81386522 81386522 C T HGF Missense_Mutation p.M155I 0.16 tolerated(0.07) benign(0.383) TCGA-90-A4ED-01 7 81600155 81600155 G A CACNA2D1 Intron 0.38 TCGA-90-A4ED-01 7 81667460 81667460 T A CACNA2D1 Missense_Mutation p.N324I 0.28 tolerated(0.13) benign(0.413) TCGA-90-A4ED-01 7 81799898 81799898 G A CACNA2D1 Nonsense_Mutation p.Q108* 0.27 TCGA-90-A4ED-01 7 82538215 82538215 G A PCLO Missense_Mutation p.P4472L 0.21 unknown(0) TCGA-90-A4ED-01 7 82584756 82584756 G A PCLO Missense_Mutation p.P1838L 0.32 unknown(0) TCGA-90-A4ED-01 7 82586021 82586021 G A PCLO Silent p.V1416V 0.26 TCGA-90-A4ED-01 7 83036526 83036526 G A SEMA3E Missense_Mutation p.P234S 0.16 deleterious(0.05) benign(0.25) TCGA-90-A4ED-01 7 92732610 92732610 G A SAMD9 Missense_Mutation p.S934L 0.22 deleterious(0.04) benign(0.332) TCGA-90-A4ED-01 7 92732998 92732998 C T SAMD9 Missense_Mutation p.D805N 0.28 tolerated(0.06) benign(0.011) TCGA-90-A4ED-01 7 92763929 92763929 G A SAMD9L Silent p.I452I 0.43 TCGA-90-A4ED-01 7 92764168 92764168 G C SAMD9L Missense_Mutation p.L373V 0.23 tolerated(0.15) benign(0.018) TCGA-90-A4ED-01 7 94039555 94039555 G A COL1A2 Missense_Mutation p.G346D 0.18 unknown(0) TCGA-90-A4ED-01 7 98445848 98445848 G A TMEM130 Missense_Mutation p.S380F 0.19 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 7 98490061 98490061 C T TRRAP Silent p.L92L 0.38 TCGA-90-A4ED-01 7 98507897 98507897 C T TRRAP Silent p.P523P 0.23 TCGA-90-A4ED-01 7 98552797 98552797 C T TRRAP Missense_Mutation p.P1929L 0.37 probably_damaging(1) TCGA-90-A4ED-01 7 99821236 99821236 G A GATS 3'UTR 0.20 TCGA-90-A4ED-01 7 99956578 99956578 C T PILRB Silent p.L110L 0.22 TCGA-90-A4ED-01 8 102570955 102570955 C T GRHL2 Missense_Mutation p.A198V 0.32 tolerated(0.62) benign(0.05) TCGA-90-A4ED-01 8 10468453 10468453 G A RP1L1 Missense_Mutation p.S1052F 0.34 possibly_damaging(0.54) TCGA-90-A4ED-01 8 10480330 10480330 G A RP1L1 Nonsense_Mutation p.Q128* 0.15 TCGA-90-A4ED-01 8 104898250 104898250 G A RIMS2 Missense_Mutation p.E475K 0.39 deleterious_low_confidence(0) possibly_damaging(0.774) TCGA-90-A4ED-01 8 104973306 104973306 A T RIMS2 Silent p.I905I 0.13 TCGA-90-A4ED-01 8 105509828 105509828 A T LRP12 Missense_Mutation p.Y318N 0.39 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 8 105511634 105511634 G A LRP12 Missense_Mutation p.P129L 0.42 tolerated(0.05) probably_damaging(0.986) TCGA-90-A4ED-01 8 10583582 10583582 G A SOX7 Missense_Mutation p.P330L 0.07 tolerated(0.09) possibly_damaging(0.863) TCGA-90-A4ED-01 8 109796800 109796800 A G TMEM74 Silent p.Y176Y 0.47 TCGA-90-A4ED-01 8 110131555 110131555 C T TRHR Silent p.V356V 0.18 TCGA-90-A4ED-01 8 110453571 110453571 G A PKHD1L1 Silent p.G1389G 0.21 TCGA-90-A4ED-01 8 116599806 116599806 G A TRPS1 Missense_Mutation p.R708C 0.18 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-90-A4ED-01 8 11683616 11683616 T G FDFT1 Silent p.G198G 0.41 TCGA-90-A4ED-01 8 118185013 118185013 G A SLC30A8 3'UTR 0.37 TCGA-90-A4ED-01 8 119945526 119945526 G A TNFRSF11B Missense_Mutation p.S15F 0.35 tolerated(0.08) benign(0.398) TCGA-90-A4ED-01 8 120577195 120577195 C T ENPP2 Missense_Mutation p.R763Q 0.24 tolerated(0.39) possibly_damaging(0.676) TCGA-90-A4ED-01 8 120594747 120594747 C T ENPP2 Missense_Mutation p.E599K 0.41 deleterious(0) probably_damaging(0.996) TCGA-90-A4ED-01 8 124267148 124267148 C T ZHX1 Missense_Mutation p.E347K 0.35 deleterious(0) probably_damaging(0.988) TCGA-90-A4ED-01 8 124408514 124408514 G A ATAD2 Silent p.F28F 0.36 TCGA-90-A4ED-01 8 125551344 125551344 C T TATDN1 5'Flank 0.10 TCGA-90-A4ED-01 8 125551345 125551345 C T TATDN1 5'Flank 0.10 TCGA-90-A4ED-01 8 131922026 131922026 C A ADCY8 Missense_Mutation p.R523M 0.18 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 8 139164857 139164857 C T FAM135B Missense_Mutation p.G621R 0.45 tolerated(0.19) benign(0.024) TCGA-90-A4ED-01 8 139606364 139606364 G A COL22A1 Missense_Mutation p.P1504L 0.30 unknown(0) TCGA-90-A4ED-01 8 139606365 139606365 G A COL22A1 Missense_Mutation p.P1504S 0.30 unknown(0) TCGA-90-A4ED-01 8 139635989 139635989 G A COL22A1 Missense_Mutation p.P1253S 0.13 unknown(0) TCGA-90-A4ED-01 8 141542092 141542092 G A AGO2 3'UTR 0.43 TCGA-90-A4ED-01 8 143602259 143602259 C T BAI1 Silent p.L999L 0.32 TCGA-90-A4ED-01 8 143614755 143614755 G A BAI1 Silent p.Q1166Q 0.54 TCGA-90-A4ED-01 8 143745729 143745729 G A JRK RNA 0.21 TCGA-90-A4ED-01 8 144297312 144297312 G A GPIHBP1 Silent p.R158R 0.20 TCGA-90-A4ED-01 8 144919459 144919459 G A NRBP2 Silent p.V363V 0.27 TCGA-90-A4ED-01 8 144945250 144945250 G A EPPK1 Silent p.I724I 0.13 TCGA-90-A4ED-01 8 144994780 144994780 G A PLEC Missense_Mutation p.P3207L 0.09 probably_damaging(1) TCGA-90-A4ED-01 8 144999049 144999049 G A PLEC Missense_Mutation p.A1820V 0.13 unknown(0) TCGA-90-A4ED-01 8 145112371 145112371 G A OPLAH Missense_Mutation p.P468S 0.71 deleterious(0.01) probably_damaging(0.982) TCGA-90-A4ED-01 8 146062852 146062852 G A ZNF7 Silent p.Q69Q 0.10 TCGA-90-A4ED-01 8 17927368 17927368 G A ASAH1 Missense_Mutation p.S95F 0.48 tolerated(0.36) benign(0.349) TCGA-90-A4ED-01 8 18725439 18725439 G A PSD3 Missense_Mutation p.S460F 0.42 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 8 195881 195881 C T ZNF596 Missense_Mutation p.S345F 0.38 tolerated(0.42) possibly_damaging(0.718) TCGA-90-A4ED-01 8 20054940 20054940 G A ATP6V1B2 Missense_Mutation p.G8E 0.25 deleterious_low_confidence(0) possibly_damaging(0.522) TCGA-90-A4ED-01 8 21767019 21767019 G A DOK2 Missense_Mutation p.P348S 0.23 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 8 21937699 21937699 C T DMTN Nonsense_Mutation p.Q282* 0.31 TCGA-90-A4ED-01 8 21986489 21986489 G A HR Silent p.F65F 0.18 TCGA-90-A4ED-01 8 22049600 22049600 C T BMP1 Silent p.S372S 0.12 TCGA-90-A4ED-01 8 22067128 22067128 G A BMP1 Missense_Mutation p.D916N 0.41 tolerated(0.13) benign(0.284) TCGA-90-A4ED-01 8 22137079 22137079 G A PIWIL2 Silent p.Q60Q 0.32 TCGA-90-A4ED-01 8 22428582 22428582 C T SORBS3 Missense_Mutation p.P531S 0.37 deleterious(0.03) probably_damaging(0.99) TCGA-90-A4ED-01 8 23306275 23306275 G A ENTPD4 Silent p.T62T 0.41 TCGA-90-A4ED-01 8 27288453 27288453 G A PTK2B Missense_Mutation p.E244K 0.19 deleterious(0.04) possibly_damaging(0.465) TCGA-90-A4ED-01 8 27301746 27301746 C T PTK2B Silent p.P724P 0.29 TCGA-90-A4ED-01 8 27301747 27301747 C T PTK2B Missense_Mutation p.P725S 0.28 tolerated(0.22) benign(0.032) TCGA-90-A4ED-01 8 27729430 27729430 G A SCARA5 3'UTR 0.35 TCGA-90-A4ED-01 8 28573503 28573503 C T EXTL3 5'UTR 0.26 TCGA-90-A4ED-01 8 28574128 28574128 T A EXTL3 Missense_Mutation p.D184E 0.39 deleterious(0) probably_damaging(0.983) TCGA-90-A4ED-01 8 28651335 28651335 G A INTS9 Silent p.I342I 0.10 TCGA-90-A4ED-01 8 28651371 28651371 G A INTS9 Silent p.S330S 0.41 TCGA-90-A4ED-01 8 3226776 3226776 C T CSMD1 Missense_Mutation p.G967R 0.27 probably_damaging(1) TCGA-90-A4ED-01 8 3265630 3265630 C T CSMD1 Missense_Mutation p.R621Q 0.41 probably_damaging(0.946) TCGA-90-A4ED-01 8 3565960 3565960 C T CSMD1 Missense_Mutation p.D329N 0.34 benign(0.244) TCGA-90-A4ED-01 8 37686812 37686812 C T GPR124 Silent p.T148T 0.19 TCGA-90-A4ED-01 8 37688265 37688265 G A GPR124 Silent p.P252P 0.31 TCGA-90-A4ED-01 8 38027430 38027430 A G LSM1 Silent p.L41L 0.37 TCGA-90-A4ED-01 8 38285871 38285871 G A FGFR1 Silent p.N180N 0.27 TCGA-90-A4ED-01 8 39080710 39080710 G A ADAM32 Missense_Mutation p.G493E 0.36 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 8 39495113 39495113 G A ADAM18 Missense_Mutation p.E240K 0.11 tolerated(1) benign(0.003) TCGA-90-A4ED-01 8 39872822 39872822 G A IDO2 Missense_Mutation p.E322K 0.51 deleterious(0.02) possibly_damaging(0.852) TCGA-90-A4ED-01 8 41530302 41530302 C T ANK1 Missense_Mutation p.E1597K 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.492) TCGA-90-A4ED-01 8 42012430 42012430 C T AP3M2 Silent p.P75P 0.44 TCGA-90-A4ED-01 8 42040343 42040343 C T PLAT Missense_Mutation p.G233S 0.36 deleterious(0.01) probably_damaging(0.96) TCGA-90-A4ED-01 8 42231663 42231663 C T DKK4 Silent p.R210R 0.38 TCGA-90-A4ED-01 8 42587253 42587253 C T CHRNB3 Missense_Mutation p.S268F 0.33 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 8 48888322 48888322 T A MCM4 Missense_Mutation p.L805M 0.10 tolerated(0.07) possibly_damaging(0.632) TCGA-90-A4ED-01 8 52359645 52359645 C T PXDNL Missense_Mutation p.D482N 0.11 tolerated(0.08) possibly_damaging(0.721) TCGA-90-A4ED-01 8 53071519 53071519 G A ST18 Missense_Mutation p.S582F 0.15 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 8 53076602 53076602 C T ST18 Silent p.Q448Q 0.12 TCGA-90-A4ED-01 8 54684586 54684586 G A ATP6V1H Missense_Mutation p.L338F 0.29 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 8 57878841 57878841 G A IMPAD1 Silent p.I239I 0.10 TCGA-90-A4ED-01 8 61764668 61764668 C T CHD7 Missense_Mutation p.A1919V 0.24 probably_damaging(0.989) TCGA-90-A4ED-01 8 72267065 72267065 C A EYA1 Missense_Mutation p.G26C 0.17 deleterious_low_confidence(0) possibly_damaging(0.853) TCGA-90-A4ED-01 8 73848568 73848568 C T KCNB2 Silent p.F326F 0.12 TCGA-90-A4ED-01 8 73848580 73848580 G A KCNB2 Silent p.R330R 0.17 TCGA-90-A4ED-01 8 77764839 77764839 C T ZFHX4 Silent p.S1894S 0.21 TCGA-90-A4ED-01 8 77896111 77896111 G A PEX2 Nonsense_Mutation p.Q102* 0.12 TCGA-90-A4ED-01 8 80567225 80567225 C T STMN2 Silent p.I136I 0.42 TCGA-90-A4ED-01 8 82357158 82357158 C T PMP2 Missense_Mutation p.G47E 0.11 tolerated(0.07) benign(0.412) TCGA-90-A4ED-01 8 82357197 82357197 C T PMP2 Missense_Mutation p.G34E 0.14 deleterious(0) probably_damaging(0.99) TCGA-90-A4ED-01 8 92355654 92355654 G A SLC26A7 Missense_Mutation p.G367E 0.33 deleterious(0) probably_damaging(0.995) TCGA-90-A4ED-01 8 92378934 92378934 G A SLC26A7 Missense_Mutation p.D539N 0.46 tolerated(0.28) benign(0.016) TCGA-90-A4ED-01 8 94746555 94746555 G A RBM12B Missense_Mutation p.P695L 0.40 tolerated_low_confidence(0.12) benign(0.003) TCGA-90-A4ED-01 8 94828707 94828707 C T TMEM67 3'UTR 0.23 TCGA-90-A4ED-01 8 95399243 95399243 C T RAD54B Missense_Mutation p.A652T 0.19 tolerated(0.28) benign(0.005) TCGA-90-A4ED-01 8 97157669 97157669 C T GDF6 Missense_Mutation p.A164T 0.57 deleterious(0.02) possibly_damaging(0.663) TCGA-90-A4ED-01 8 99118505 99118505 G A HRSP12 Missense_Mutation p.T74I 0.15 deleterious(0.04) benign(0.244) TCGA-90-A4ED-01 9 100616404 100616404 C T FOXE1 Missense_Mutation p.P70S 0.14 deleterious(0) possibly_damaging(0.53) TCGA-90-A4ED-01 9 101797312 101797312 G A COL15A1 Missense_Mutation p.R699K 0.18 tolerated(0.23) benign(0.01) TCGA-90-A4ED-01 9 101816914 101816914 G A COL15A1 Missense_Mutation p.D1003N 0.17 deleterious(0.04) probably_damaging(0.978) TCGA-90-A4ED-01 9 102595938 102595938 C T NR4A3 Intron 0.25 TCGA-90-A4ED-01 9 104187240 104187240 G A ALDOB Missense_Mutation p.P295L 0.22 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 9 1053730 1053730 G A DMRT2 Silent p.K178K 0.39 TCGA-90-A4ED-01 9 105767545 105767545 G A CYLC2 Missense_Mutation p.G211E 0.35 tolerated(0.59) unknown(0) TCGA-90-A4ED-01 9 107367631 107367631 G A OR13C2 Missense_Mutation p.S93F 0.37 deleterious(0.03) probably_damaging(0.998) TCGA-90-A4ED-01 9 111624704 111624704 G A ACTL7A Silent p.R34R 0.14 TCGA-90-A4ED-01 9 111624705 111624705 G A ACTL7A Missense_Mutation p.D35N 0.16 deleterious_low_confidence(0.05) benign(0.074) TCGA-90-A4ED-01 9 111625406 111625406 G A ACTL7A Silent p.Q268Q 0.17 TCGA-90-A4ED-01 9 111911995 111911995 G A FRRS1L Missense_Mutation p.P133S 0.22 tolerated(0.05) benign(0.16) TCGA-90-A4ED-01 9 112898862 112898862 C T PALM2-AKAP2 Silent p.I346I 0.49 TCGA-90-A4ED-01 9 114305032 114305032 C T ZNF483 Missense_Mutation p.P606L 0.41 deleterious(0.02) probably_damaging(0.981) TCGA-90-A4ED-01 9 114409426 114409426 C T DNAJC25 Missense_Mutation p.H126Y 0.57 deleterious(0) probably_damaging(0.943) TCGA-90-A4ED-01 9 114804158 114804158 G A SUSD1 Silent p.F744F 0.38 TCGA-90-A4ED-01 9 116021116 116021116 C T SLC31A1 Silent p.I115I 0.27 TCGA-90-A4ED-01 9 117027743 117027743 C T COL27A1 Silent p.L1127L 0.32 TCGA-90-A4ED-01 9 120476223 120476223 G A TLR4 Missense_Mutation p.R606Q 0.12 tolerated(0.74) benign(0) TCGA-90-A4ED-01 9 123232492 123232492 G A CDK5RAP2 Missense_Mutation p.S622L 0.25 deleterious(0.03) benign(0.063) TCGA-90-A4ED-01 9 123744199 123744199 C T C5 Missense_Mutation p.A1137T 0.38 tolerated(0.15) benign(0.044) TCGA-90-A4ED-01 9 123744200 123744200 T A C5 Missense_Mutation p.E1136D 0.38 tolerated(0.44) benign(0.011) TCGA-90-A4ED-01 9 123939554 123939554 C T CNTRL 3'UTR 0.30 TCGA-90-A4ED-01 9 124929144 124929144 C T MORN5 Missense_Mutation p.P49S 0.10 tolerated(0.08) possibly_damaging(0.58) TCGA-90-A4ED-01 9 125563093 125563093 C T OR1K1 Missense_Mutation p.S231L 0.44 deleterious(0.01) possibly_damaging(0.651) TCGA-90-A4ED-01 9 127115979 127115979 C A PSMB7 Silent p.R244R 0.40 TCGA-90-A4ED-01 9 127262901 127262901 A G NR5A1 Missense_Mutation p.I113T 0.25 tolerated(0.1) benign(0.279) TCGA-90-A4ED-01 9 130507207 130507207 G A SH2D3C Missense_Mutation p.S479F 0.38 deleterious(0.02) probably_damaging(0.954) TCGA-90-A4ED-01 9 130684309 130684309 G A PIP5KL1 Silent p.I334I 0.38 TCGA-90-A4ED-01 9 130984872 130984872 C T DNM1 Silent p.V375V 0.25 TCGA-90-A4ED-01 9 133901892 133901892 C T LAMC3 Silent p.S198S 0.43 TCGA-90-A4ED-01 9 133942379 133942379 T C LAMC3 Missense_Mutation p.F794L 0.35 deleterious(0.03) benign(0.38) TCGA-90-A4ED-01 9 134360420 134360420 C T PRRC2B Missense_Mutation p.P1884L 0.27 deleterious(0) possibly_damaging(0.764) TCGA-90-A4ED-01 9 134501434 134501434 G A RAPGEF1 Missense_Mutation p.A527V 0.28 tolerated(0.12) possibly_damaging(0.812) TCGA-90-A4ED-01 9 135073353 135073353 G A NTNG2 Missense_Mutation p.E72K 0.27 tolerated(0.06) probably_damaging(0.946) TCGA-90-A4ED-01 9 135203162 135203162 G A SETX Missense_Mutation p.R1275C 0.21 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 9 135271886 135271886 G A TTF1 Missense_Mutation p.A597V 0.32 deleterious(0.02) benign(0.025) TCGA-90-A4ED-01 9 135785987 135785987 G A TSC1 Missense_Mutation p.P412S 0.26 tolerated(0.15) benign(0.008) TCGA-90-A4ED-01 9 135946595 135946595 C T CEL Missense_Mutation p.T572I 0.33 tolerated(0.17) benign(0.003) TCGA-90-A4ED-01 9 136136760 136136760 G A ABO RNA 0.46 TCGA-90-A4ED-01 9 136298824 136298824 G A ADAMTS13 Silent p.Q436Q 0.27 TCGA-90-A4ED-01 9 137591881 137591881 C T COL5A1 Missense_Mutation p.S135F 0.35 probably_damaging(0.999) TCGA-90-A4ED-01 9 137664656 137664656 C T COL5A1 Silent p.G769G 0.32 TCGA-90-A4ED-01 9 138376933 138376933 G T PPP1R26 Nonsense_Mutation p.G193* 0.18 TCGA-90-A4ED-01 9 139256519 139256519 G A DNLZ Missense_Mutation p.P161L 0.62 tolerated(0.52) benign(0.007) TCGA-90-A4ED-01 9 139256520 139256520 G A DNLZ Missense_Mutation p.P161S 0.58 tolerated(0.71) benign(0.012) TCGA-90-A4ED-01 9 139371522 139371522 G A SEC16A Silent p.L182L 0.27 TCGA-90-A4ED-01 9 139571993 139571993 G A AGPAT2 Silent p.F66F 0.42 TCGA-90-A4ED-01 9 139650907 139650907 G A LCN8 Intron 0.26 TCGA-90-A4ED-01 9 139738982 139738982 C T C9orf172 Missense_Mutation p.P39L 0.22 tolerated(0.29) possibly_damaging(0.851) TCGA-90-A4ED-01 9 139802544 139802544 C T TRAF2 Missense_Mutation p.P130L 0.25 tolerated(0.06) benign(0.006) TCGA-90-A4ED-01 9 140109561 140109561 C T NDOR1 Silent p.F360F 0.17 TCGA-90-A4ED-01 9 140705913 140705913 G A EHMT1 Missense_Mutation p.E905K 0.38 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 9 15267944 15267944 G A TTC39B Silent p.D81D 0.17 TCGA-90-A4ED-01 9 18533266 18533266 C T ADAMTSL1 Silent p.I71I 0.31 TCGA-90-A4ED-01 9 19360269 19360269 C T DENND4C Missense_Mutation p.P1681S 0.13 tolerated(0.52) benign(0.008) TCGA-90-A4ED-01 9 19360270 19360270 C T DENND4C Missense_Mutation p.P1681L 0.13 tolerated(0.34) benign(0.005) TCGA-90-A4ED-01 9 21228046 21228046 G T IFNA17 Missense_Mutation p.Q43K 0.29 tolerated(0.07) benign(0.147) TCGA-90-A4ED-01 9 22029452 22029452 C T CDKN2B-AS1 RNA 0.22 TCGA-90-A4ED-01 9 32542295 32542295 G A TOPORS Missense_Mutation p.S743F 0.21 deleterious_low_confidence(0) unknown(0) TCGA-90-A4ED-01 9 32630105 32630105 C T TAF1L Missense_Mutation p.G1825R 0.42 unknown(0) TCGA-90-A4ED-01 9 32784303 32784303 C T TMEM215 Missense_Mutation p.P41L 0.33 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 9 33462686 33462686 G A NOL6 Silent p.A1139A 0.34 TCGA-90-A4ED-01 9 33465845 33465845 G A NOL6 Silent p.I805I 0.31 TCGA-90-A4ED-01 9 34381024 34381024 G A C9orf24 Missense_Mutation p.P193L 0.32 deleterious(0.03) probably_damaging(0.917) TCGA-90-A4ED-01 9 34564799 34564799 G A CNTFR Silent p.G39G 0.47 TCGA-90-A4ED-01 9 34610697 34610697 G A RPP25L 3'UTR 0.21 TCGA-90-A4ED-01 9 35684542 35684542 G A TPM2 Silent p.S215S 0.35 TCGA-90-A4ED-01 9 35792448 35792448 G A NPR2 Missense_Mutation p.G15S 0.34 tolerated_low_confidence(0.65) benign(0.082) TCGA-90-A4ED-01 9 35826155 35826155 C T FAM221B Missense_Mutation p.E2K 0.27 deleterious(0) probably_damaging(0.999) TCGA-90-A4ED-01 9 35826156 35826156 C T FAM221B Translation_Start_Site p.M1? 0.27 deleterious(0) probably_damaging(0.997) TCGA-90-A4ED-01 9 35842452 35842452 C T TMEM8B Missense_Mutation p.S6F 0.23 deleterious(0) possibly_damaging(0.691) TCGA-90-A4ED-01 9 36376001 36376001 G A RNF38 Missense_Mutation p.P96S 0.27 deleterious(0.01) benign(0.009) TCGA-90-A4ED-01 9 36376002 36376002 G A RNF38 Silent p.P95P 0.27 TCGA-90-A4ED-01 9 40716135 40716135 C T FAM74A3 RNA 0.09 TCGA-90-A4ED-01 9 43624960 43624960 G A SPATA31A6 Missense_Mutation p.P1243S 0.18 tolerated(0.67) benign(0.003) TCGA-90-A4ED-01 9 6610235 6610235 C T GLDC Missense_Mutation p.D198N 0.36 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 9 71866128 71866128 C T TJP2 Missense_Mutation p.P1088S 0.35 deleterious_low_confidence(0.04) benign(0.272) TCGA-90-A4ED-01 9 74305015 74305015 G A TMEM2 Missense_Mutation p.P1282S 0.37 tolerated(0.06) benign(0.014) TCGA-90-A4ED-01 9 77448989 77448989 G A TRPM6 Silent p.S198S 0.22 TCGA-90-A4ED-01 9 79323988 79323988 C T PRUNE2 Missense_Mutation p.E1068K 0.24 deleterious(0) possibly_damaging(0.804) TCGA-90-A4ED-01 9 79465507 79465507 C T PRUNE2 Silent p.T72T 0.19 TCGA-90-A4ED-01 9 84532139 84532139 C T SPATA31D5P RNA 0.38 TCGA-90-A4ED-01 9 84607354 84607354 C T SPATA31D1 Missense_Mutation p.P657S 0.43 tolerated(0.27) benign(0.007) TCGA-90-A4ED-01 9 84608199 84608199 C T SPATA31D1 Silent p.S938S 0.43 TCGA-90-A4ED-01 9 8484342 8484342 C T PTPRD Missense_Mutation p.D1064N 0.28 deleterious(0) probably_damaging(0.993) TCGA-90-A4ED-01 9 8504281 8504281 G A PTPRD Missense_Mutation p.S601L 0.22 tolerated(0.2) benign(0.196) TCGA-90-A4ED-01 9 8518411 8518411 C T PTPRD Missense_Mutation p.G327E 0.23 tolerated(0.16) probably_damaging(1) TCGA-90-A4ED-01 9 90502535 90502535 T A SPATA31E1 Missense_Mutation p.W1045R 0.33 tolerated(0.39) probably_damaging(0.977) TCGA-90-A4ED-01 9 90503417 90503417 C T SPATA31E1 Missense_Mutation p.P1339S 0.38 tolerated(0.28) benign(0.237) TCGA-90-A4ED-01 9 90534141 90534141 C T SPATA31C1 Intron 0.17 TCGA-90-A4ED-01 9 94173138 94173138 G A NFIL3 5'UTR 0.31 TCGA-90-A4ED-01 9 95043163 95043163 G A IARS Missense_Mutation p.P204S 0.13 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 9 96278304 96278304 G A FAM120A Missense_Mutation p.G391S 0.47 tolerated(0.41) benign(0.006) TCGA-90-A4ED-01 9 97329775 97329775 G A FBP2 Intron 0.19 TCGA-90-A4ED-01 9 98239043 98239043 C A PTCH1 Nonsense_Mutation p.E534* 0.61 TCGA-90-A4ED-01 9 98248088 98248088 G A PTCH1 Missense_Mutation p.P155S 0.18 tolerated(1) benign(0.002) TCGA-90-A4ED-01 X 101395955 101395955 C T TCEAL6 Missense_Mutation p.G117R 0.44 deleterious(0) probably_damaging(0.962) TCGA-90-A4ED-01 X 104463678 104463678 C T TEX13A Missense_Mutation p.G400R 0.53 tolerated(0.07) probably_damaging(0.995) TCGA-90-A4ED-01 X 105011308 105011308 C T IL1RAPL2 Missense_Mutation p.S572F 0.60 deleterious(0.02) possibly_damaging(0.809) TCGA-90-A4ED-01 X 105011309 105011309 C T IL1RAPL2 Silent p.S572S 0.60 TCGA-90-A4ED-01 X 106117204 106117204 G A TBC1D8B 3'UTR 0.64 TCGA-90-A4ED-01 X 106843997 106843997 C T FRMPD3 Silent p.L943L 0.69 TCGA-90-A4ED-01 X 106844898 106844898 C T FRMPD3 Missense_Mutation p.S1243F 0.66 deleterious_low_confidence(0.01) possibly_damaging(0.509) TCGA-90-A4ED-01 X 109764338 109764338 C T TDGF1P3 RNA 0.54 TCGA-90-A4ED-01 X 111195594 111195594 G A TRPC5 Missense_Mutation p.P19S 0.67 tolerated(0.06) possibly_damaging(0.607) TCGA-90-A4ED-01 X 114384505 114384505 G A LRCH2 Missense_Mutation p.P527L 0.55 deleterious(0.03) benign(0.164) TCGA-90-A4ED-01 X 114384506 114384506 G A LRCH2 Missense_Mutation p.P527S 0.57 tolerated(0.19) benign(0.01) TCGA-90-A4ED-01 X 118151601 118151601 G A LONRF3 Missense_Mutation p.R743K 0.52 deleterious(0) probably_damaging(0.998) TCGA-90-A4ED-01 X 123654409 123654409 C T TENM1 Missense_Mutation p.D1087N 0.54 tolerated(0.27) benign(0.168) TCGA-90-A4ED-01 X 129059134 129059134 C T UTP14A Missense_Mutation p.S571F 0.45 tolerated(0.07) benign(0.076) TCGA-90-A4ED-01 X 129518464 129518464 C T GPR119 Missense_Mutation p.E320K 0.59 tolerated(0.38) benign(0.116) TCGA-90-A4ED-01 X 129518524 129518524 C T GPR119 Missense_Mutation p.V300M 0.51 tolerated(0.25) benign(0.11) TCGA-90-A4ED-01 X 135314126 135314126 G A MAP7D3 Silent p.A330A 0.55 TCGA-90-A4ED-01 X 13773344 13773344 C T OFD1 Missense_Mutation p.R402C 0.33 deleterious(0.02) benign(0.287) TCGA-90-A4ED-01 X 138612955 138612955 C T F9 Missense_Mutation p.S11L 0.53 tolerated(0.81) benign(0.002) TCGA-90-A4ED-01 X 140994505 140994505 C T MAGEC1 Missense_Mutation p.P439S 0.56 tolerated_low_confidence(0.38) benign(0) TCGA-90-A4ED-01 X 140995569 140995569 T C MAGEC1 Silent p.S793S 0.60 TCGA-90-A4ED-01 X 140995760 140995760 C T MAGEC1 Missense_Mutation p.S857F 0.61 deleterious_low_confidence(0) unknown(0) TCGA-90-A4ED-01 X 1422902 1422902 C T CSF2RA Missense_Mutation p.L379F 0.43 deleterious(0.01) probably_damaging(0.98) TCGA-90-A4ED-01 X 142717427 142717427 T G SLITRK4 Silent p.R500R 0.42 TCGA-90-A4ED-01 X 1428361 1428361 G A CSF2RA Missense_Mutation p.E432K 0.38 deleterious(0.01) possibly_damaging(0.895) TCGA-90-A4ED-01 X 147088236 147088236 G A FMR1NB Missense_Mutation p.E138K 0.44 deleterious(0.01) possibly_damaging(0.486) TCGA-90-A4ED-01 X 148797301 148797301 C T MAGEA11 Missense_Mutation p.P77L 0.64 deleterious(0.01) possibly_damaging(0.908) TCGA-90-A4ED-01 X 150348850 150348850 G A GPR50 Silent p.K265K 0.53 TCGA-90-A4ED-01 X 151870060 151870060 C T MAGEA6 Silent p.F250F 0.52 TCGA-90-A4ED-01 X 151909181 151909181 A T CSAG1 Missense_Mutation p.E70D 0.50 tolerated_low_confidence(0.49) possibly_damaging(0.764) TCGA-90-A4ED-01 X 152860113 152860113 G A FAM58A Silent p.P105P 0.67 TCGA-90-A4ED-01 X 15306169 15306169 C T ASB11 Nonsense_Mutation p.W227* 0.62 TCGA-90-A4ED-01 X 153132543 153132543 C T L1CAM Missense_Mutation p.G725E 0.60 deleterious(0.01) probably_damaging(0.999) TCGA-90-A4ED-01 X 153133776 153133776 C T L1CAM Missense_Mutation p.E562K 0.50 deleterious(0.02) possibly_damaging(0.794) TCGA-90-A4ED-01 X 153248276 153248276 C T TMEM187 Missense_Mutation p.P255S 0.47 tolerated(0.11) benign(0.085) TCGA-90-A4ED-01 X 153588433 153588433 G A FLNA Missense_Mutation p.P1244S 0.48 deleterious(0) probably_damaging(1) TCGA-90-A4ED-01 X 153588434 153588434 G A FLNA Silent p.F1243F 0.50 TCGA-90-A4ED-01 X 15444036 15444036 G A PIR Silent p.I186I 0.56 TCGA-90-A4ED-01 X 18842145 18842145 G A PPEF1 Missense_Mutation p.G536R 0.56 deleterious(0.02) benign(0.228) TCGA-90-A4ED-01 X 21627411 21627411 G A CNKSR2 Missense_Mutation p.E790K 0.44 deleterious(0.05) possibly_damaging(0.889) TCGA-90-A4ED-01 X 21674806 21674806 G A KLHL34 Silent p.F367F 0.68 TCGA-90-A4ED-01 X 23722905 23722905 G A ACOT9 Silent p.S388S 0.59 TCGA-90-A4ED-01 X 24024746 24024746 C T KLHL15 Missense_Mutation p.R22K 0.66 tolerated(0.88) benign(0.011) TCGA-90-A4ED-01 X 27998057 27998057 C T DCAF8L1 Nonsense_Mutation p.W465* 0.58 TCGA-90-A4ED-01 X 34148347 34148347 C T FAM47A Silent p.S683S 0.54 TCGA-90-A4ED-01 X 35820443 35820443 C T MAGEB16 Missense_Mutation p.P44S 0.25 tolerated(0.35) benign(0.074) TCGA-90-A4ED-01 X 43817929 43817929 G A NDP 5'UTR 0.85 TCGA-90-A4ED-01 X 48418879 48418879 C T TBC1D25 Missense_Mutation p.P528L 0.67 tolerated(0.54) benign(0.011) TCGA-90-A4ED-01 X 50144105 50144105 C T DGKK RNA 0.50 TCGA-90-A4ED-01 X 52681309 52681309 C T SSX7 Silent p.G91G 0.51 TCGA-90-A4ED-01 X 52847277 52847277 G A XAGE5 3'UTR 0.58 TCGA-90-A4ED-01 X 53576439 53576439 G A HUWE1 Silent p.L3172L 0.50 TCGA-90-A4ED-01 X 54011586 54011586 G A PHF8 Missense_Mutation p.S771L 0.70 tolerated(0.14) benign(0.004) TCGA-90-A4ED-01 X 54161446 54161446 G A FAM120C Silent p.S478S 0.56 TCGA-90-A4ED-01 X 54319354 54319354 G A WNK3 Silent p.S668S 0.42 TCGA-90-A4ED-01 X 54971971 54971971 G A PFKFB1 Silent p.V333V 0.67 TCGA-90-A4ED-01 X 72674217 72674217 G A CDX4 Silent p.V217V 0.64 TCGA-90-A4ED-01 X 73064758 73064758 G A XIST RNA 0.64 TCGA-90-A4ED-01 X 82763465 82763465 G A POU3F4 Missense_Mutation p.G45R 0.62 deleterious(0.01) possibly_damaging(0.839) TCGA-90-A4ED-01 X 90691156 90691156 G A PABPC5 Missense_Mutation p.D194N 0.67 tolerated(0.05) benign(0.191) TCGA-90-A4ED-01 X 9714103 9714103 G A GPR143 Silent p.F213F 0.63 TCGA-90-A4ED-01 X 9905699 9905699 C T SHROOM2 Silent p.I1371I 0.60 TCGA-90-A4EE-01 10 102566234 102566234 G A PAX2 Missense_Mutation p.D245N 0.37 deleterious(0.04) benign(0.275) TCGA-90-A4EE-01 10 108924071 108924071 G T SORCS1 Missense_Mutation p.L72I 0.21 tolerated_low_confidence(0.45) benign(0.005) TCGA-90-A4EE-01 10 114045924 114045924 C A TECTB Nonsense_Mutation p.C121* 0.44 TCGA-90-A4EE-01 10 117704277 117704277 G T ATRNL1 Missense_Mutation p.G1376V 0.38 deleterious(0) probably_damaging(0.999) TCGA-90-A4EE-01 10 118897436 118897436 G C VAX1 Silent p.L44L 0.37 TCGA-90-A4EE-01 10 20432332 20432332 G A PLXDC2 Missense_Mutation p.R217K 0.24 tolerated(0.44) benign(0.313) TCGA-90-A4EE-01 10 23408237 23408237 G A MSRB2 Missense_Mutation p.E101K 0.18 deleterious(0.03) benign(0.41) TCGA-90-A4EE-01 10 26462731 26462731 G C MYO3A Missense_Mutation p.E1180Q 0.19 tolerated(0.82) benign(0.01) TCGA-90-A4EE-01 10 33136791 33136791 T C C10ORF68 Missense_Mutation p.I483T 0.33 tolerated(0.11) benign(0.003) TCGA-90-A4EE-01 10 5808094 5808094 C T GDI2 Missense_Mutation p.D405N 0.20 deleterious(0) probably_damaging(1) TCGA-90-A4EE-01 10 64403720 64403720 C A ZNF365 Intron 0.21 TCGA-90-A4EE-01 10 69565512 69565512 G T DNAJC12 Missense_Mutation p.L111M 0.29 tolerated(0.05) possibly_damaging(0.765) TCGA-90-A4EE-01 10 70644558 70644558 C T STOX1 Nonsense_Mutation p.Q336* 0.29 TCGA-90-A4EE-01 10 85991814 85991814 C T LRIT1 Missense_Mutation p.E581K 0.19 tolerated(0.56) benign(0.124) TCGA-90-A4EE-01 11 10800578 10800578 G A CTR9 Missense_Mutation p.E1150K 0.16 tolerated_low_confidence(0.15) benign(0.292) TCGA-90-A4EE-01 11 108577507 108577507 C T DDX10 Missense_Mutation p.S422L 0.25 deleterious(0) probably_damaging(0.999) TCGA-90-A4EE-01 11 110494887 110494887 T A ARHGAP20 Missense_Mutation p.S168C 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-90-A4EE-01 11 118765178 118765178 T C CXCR5 Missense_Mutation p.F309L 0.24 tolerated(0.67) benign(0.173) TCGA-90-A4EE-01 11 12315350 12315350 C T MICALCL Silent p.I124I 0.20 TCGA-90-A4EE-01 11 124626482 124626482 T C ESAM Missense_Mutation p.K136E 0.15 tolerated(0.81) benign(0.102) TCGA-90-A4EE-01 11 14529258 14529258 C T PSMA1 Missense_Mutation p.D233N 0.11 tolerated(0.08) benign(0.004) TCGA-90-A4EE-01 11 15262051 15262051 C A INSC Silent p.A531A 0.15 TCGA-90-A4EE-01 11 248807 248807 G A PSMD13 Silent p.L202L 0.10 TCGA-90-A4EE-01 11 294461 294461 G A ATHL1 Missense_Mutation p.R668Q 0.12 tolerated(0.14) benign(0.01) TCGA-90-A4EE-01 11 30032753 30032753 G C KCNA4 Silent p.L491L 0.19 TCGA-90-A4EE-01 11 3423884 3423884 C - TSSC2 RNA 0.31 TCGA-90-A4EE-01 11 35513699 35513699 G A PAMR1 Silent p.C91C 0.22 TCGA-90-A4EE-01 11 44099398 44099398 A C ACCS Missense_Mutation p.T220P 0.19 deleterious(0.02) possibly_damaging(0.908) TCGA-90-A4EE-01 11 4825736 4825736 T G OR52R1 5'Flank 0.13 TCGA-90-A4EE-01 11 55595043 55595043 G T OR5L2 Missense_Mutation p.V117L 0.22 deleterious(0.02) benign(0.108) TCGA-90-A4EE-01 11 55595360 55595360 C T OR5L2 Silent p.L222L 0.18 TCGA-90-A4EE-01 11 55798682 55798682 C A OR5AS1 Missense_Mutation p.T263N 0.24 deleterious(0.01) possibly_damaging(0.529) TCGA-90-A4EE-01 11 5905776 5905776 G T OR52E4 Missense_Mutation p.G85V 0.15 deleterious(0) possibly_damaging(0.493) TCGA-90-A4EE-01 11 59211475 59211475 T C OR5A1 Silent p.S278S 0.17 TCGA-90-A4EE-01 11 59828658 59828658 G A MS4A3 Missense_Mutation p.A9T 0.14 tolerated(0.23) benign(0.031) TCGA-90-A4EE-01 11 61908394 61908394 C G INCENP Missense_Mutation p.P491A 0.18 deleterious(0) unknown(0) TCGA-90-A4EE-01 11 64137053 64137053 G A RPS6KA4 Missense_Mutation p.E522K 0.17 tolerated(0.33) benign(0.233) TCGA-90-A4EE-01 11 64990044 64990044 G A SLC22A20 RNA 0.15 TCGA-90-A4EE-01 11 65340970 65340970 C G FAM89B Missense_Mutation p.S143C 0.24 deleterious(0.01) probably_damaging(0.992) TCGA-90-A4EE-01 11 65480965 65480965 C T KAT5 Silent p.H177H 0.16 TCGA-90-A4EE-01 11 66249751 66249751 C T DPP3 Missense_Mutation p.S27L 0.25 tolerated(0.08) benign(0.012) TCGA-90-A4EE-01 11 6650905 6650905 A T DCHS1 Missense_Mutation p.V1678E 0.24 tolerated(0.09) benign(0.008) TCGA-90-A4EE-01 11 67288551 67288551 C T CABP2 Silent p.R108R 0.19 TCGA-90-A4EE-01 11 68197133 68197133 A G LRP5 Missense_Mutation p.H1243R 0.34 tolerated(0.1) benign(0.212) TCGA-90-A4EE-01 11 68527062 68527062 G C CPT1A Missense_Mutation p.S737C 0.18 deleterious(0) probably_damaging(0.999) TCGA-90-A4EE-01 11 68527076 68527076 G A CPT1A Silent p.I732I 0.17 TCGA-90-A4EE-01 11 69486500 69486500 G C ORAOV1 Intron 0.05 TCGA-90-A4EE-01 11 69999209 69999209 T A ANO1 Missense_Mutation p.L467Q 0.22 tolerated(0.2) probably_damaging(0.962) TCGA-90-A4EE-01 11 70332712 70332712 T A SHANK2 Missense_Mutation p.E1230V 0.31 deleterious(0.02) benign(0.403) TCGA-90-A4EE-01 11 75509309 75509309 G T DGAT2 Nonsense_Mutation p.E283* 0.28 TCGA-90-A4EE-01 12 101702091 101702091 G A UTP20 Silent p.Q708Q 0.25 TCGA-90-A4EE-01 12 101769489 101769489 A G UTP20 Missense_Mutation p.I2451V 0.15 tolerated(0.36) benign(0.001) TCGA-90-A4EE-01 12 107080807 107080807 G A RFX4 Missense_Mutation p.G184R 0.19 deleterious(0.01) probably_damaging(0.985) TCGA-90-A4EE-01 12 109680273 109680273 G T ACACB Missense_Mutation p.G1685V 0.16 deleterious(0) probably_damaging(0.992) TCGA-90-A4EE-01 12 109724489 109724489 G A FOXN4 Silent p.I219I 0.28 TCGA-90-A4EE-01 12 10978273 10978273 G A TAS2R10 Missense_Mutation p.S199F 0.12 tolerated(0.11) possibly_damaging(0.766) TCGA-90-A4EE-01 12 111747976 111747976 C T CUX2 Silent p.L464L 0.20 TCGA-90-A4EE-01 12 12274107 12274107 G C LRP6 Missense_Mutation p.H1599D 0.19 tolerated_low_confidence(0.13) possibly_damaging(0.841) TCGA-90-A4EE-01 12 122826163 122826163 G A CLIP1 Nonsense_Mutation p.R530* 0.22 TCGA-90-A4EE-01 12 29617489 29617489 T C OVCH1 Silent p.L692L 0.10 TCGA-90-A4EE-01 12 319104 319104 A T SLC6A12 Missense_Mutation p.W17R 0.31 tolerated(0.34) benign(0.333) TCGA-90-A4EE-01 12 46243484 46243484 C T ARID2 Nonsense_Mutation p.Q613* 0.21 TCGA-90-A4EE-01 12 46243524 46243524 C T ARID2 Missense_Mutation p.S626F 0.19 deleterious(0.04) benign(0.084) TCGA-90-A4EE-01 12 4920482 4920482 C A KCNA6 Nonsense_Mutation p.Y425* 0.45 TCGA-90-A4EE-01 12 49433935 49433935 G A KMT2D Nonsense_Mutation p.Q2540* 0.19 TCGA-90-A4EE-01 12 49717501 49717501 C A TROAP Nonsense_Mutation p.S37* 0.21 TCGA-90-A4EE-01 12 5020735 5020735 G T KCNA1 Missense_Mutation p.G64V 0.16 deleterious(0) probably_damaging(1) TCGA-90-A4EE-01 12 52681404 52681404 G A KRT81 Silent p.A334A 0.06 TCGA-90-A4EE-01 12 58004050 58004050 G A ARHGEF25 Silent p.G17G 0.19 TCGA-90-A4EE-01 12 58004051 58004051 G T ARHGEF25 Missense_Mutation p.V18F 0.19 deleterious_low_confidence(0.01) benign(0.009) TCGA-90-A4EE-01 12 58217700 58217700 T A CTDSP2 Missense_Mutation p.H226L 0.12 deleterious(0) probably_damaging(0.999) TCGA-90-A4EE-01 12 63544318 63544318 A G AVPR1A Missense_Mutation p.V100A 0.11 deleterious(0) probably_damaging(0.967) TCGA-90-A4EE-01 12 63974516 63974516 C A DPY19L2 Missense_Mutation p.W609L 0.16 tolerated(0.08) benign(0.075) TCGA-90-A4EE-01 12 65130830 65130830 G A GNS Missense_Mutation p.P351L 0.21 deleterious(0) probably_damaging(1) TCGA-90-A4EE-01 12 7177880 7177880 C G C1S Silent p.L664L 0.15 TCGA-90-A4EE-01 12 75444237 75444237 G T KCNC2 Silent p.A516A 0.15 TCGA-90-A4EE-01 12 7656385 7656385 C T CD163 5'UTR 0.73 TCGA-90-A4EE-01 12 78571416 78571416 C G NAV3 Intron 0.15 TCGA-90-A4EE-01 12 78571429 78571429 G C NAV3 Intron 0.15 TCGA-90-A4EE-01 12 81688628 81688628 G T PPFIA2 Missense_Mutation p.P971T 0.20 deleterious(0.02) possibly_damaging(0.727) TCGA-90-A4EE-01 12 81833777 81833777 C G PPFIA2 Missense_Mutation p.E207Q 0.13 deleterious(0) probably_damaging(0.984) TCGA-90-A4EE-01 12 85518074 85518074 G A LRRIQ1 Missense_Mutation p.D1262N 0.22 tolerated(0.24) benign(0.009) TCGA-90-A4EE-01 12 863276 863276 G C WNK1 Missense_Mutation p.R182T 0.10 tolerated(0.1) unknown(0) TCGA-90-A4EE-01 12 8991012 8991012 C T A2ML1 Silent p.I312I 0.37 TCGA-90-A4EE-01 12 98850589 98850589 G A SLC9A7P1 RNA 0.20 TCGA-90-A4EE-01 13 115090605 115090605 A G CHAMP1 Missense_Mutation p.I430V 0.24 tolerated(0.7) benign(0.002) TCGA-90-A4EE-01 13 28891711 28891711 G T FLT1 Missense_Mutation p.Q1104K 0.22 deleterious(0) probably_damaging(0.999) TCGA-90-A4EE-01 13 43986168 43986168 A G ENOX1 Missense_Mutation p.I31T 0.33 deleterious_low_confidence(0.01) benign(0.001) TCGA-90-A4EE-01 14 105419641 105419641 C A AHNAK2 Missense_Mutation p.G716V 0.22 possibly_damaging(0.754) TCGA-90-A4EE-01 14 20692084 20692084 G A OR11H6 Silent p.R72R 0.32 TCGA-90-A4EE-01 14 21499252 21499252 G C TPPP2 Missense_Mutation p.K85N 0.19 deleterious(0.01) probably_damaging(0.962) TCGA-90-A4EE-01 14 21679393 21679393 C T HNRNPC Missense_Mutation p.D304N 0.09 tolerated_low_confidence(0.16) probably_damaging(0.98) TCGA-90-A4EE-01 14 21679417 21679417 C T HNRNPC Missense_Mutation p.D296N 0.12 tolerated_low_confidence(0.2) benign(0.003) TCGA-90-A4EE-01 14 21679618 21679618 C T HNRNPC Missense_Mutation p.E262K 0.18 deleterious(0.04) benign(0.152) TCGA-90-A4EE-01 14 21899111 21899111 T A CHD8 Missense_Mutation p.N231I 0.22 tolerated_low_confidence(0.15) benign(0.008) TCGA-90-A4EE-01 14 22265917 22265917 T A TRAV8-1 Missense_Mutation p.L67H 0.22 deleterious(0) probably_damaging(0.998) TCGA-90-A4EE-01 14 45432895 45432895 G C FAM179B Missense_Mutation p.R424P 0.21 deleterious(0) possibly_damaging(0.811) TCGA-90-A4EE-01 14 50249120 50249120 G C KLHDC2 Missense_Mutation p.G330A 0.21 tolerated(0.19) benign(0.319) TCGA-90-A4EE-01 14 58724494 58724494 C T PSMA3 Missense_Mutation p.S87F 0.23 tolerated(0.13) benign(0.058) TCGA-90-A4EE-01 15 101775294 101775294 G A CHSY1 Missense_Mutation p.S270F 0.22 deleterious(0) probably_damaging(0.992) TCGA-90-A4EE-01 15 24921548 24921548 C T NPAP1 Silent p.T178T 0.29 TCGA-90-A4EE-01 15 32916518 32916518 G A ARHGAP11A Missense_Mutation p.G148S 0.23 tolerated(0.25) benign(0.11) TCGA-90-A4EE-01 15 34295287 34295287 C G AVEN Missense_Mutation p.E131Q 0.21 deleterious(0) probably_damaging(0.998) TCGA-90-A4EE-01 15 43814316 43814316 C T MAP1A Silent p.L215L 0.28 TCGA-90-A4EE-01 15 50886628 50886628 G A TRPM7 Missense_Mutation p.P1158L 0.24 tolerated(0.96) benign(0.002) TCGA-90-A4EE-01 15 84245426 84245426 C T SH3GL3 Missense_Mutation p.A186V 0.30 deleterious(0) probably_damaging(0.998) TCGA-90-A4EE-01 15 85401065 85401065 G A ALPK3 Silent p.L1234L 0.49 TCGA-90-A4EE-01 15 92690292 92690292 G T SLCO3A1 Missense_Mutation p.G531W 0.44 deleterious(0) probably_damaging(0.998) TCGA-90-A4EE-01 16 1825692 1825692 G A EME2 Intron 0.21 TCGA-90-A4EE-01 16 24231476 24231476 C T PRKCB 3'UTR 0.26 TCGA-90-A4EE-01 16 50827532 50827532 C G CYLD Nonsense_Mutation p.S809* 0.29 TCGA-90-A4EE-01 16 53340276 53340276 T C CHD9 Silent p.G2249G 0.30 TCGA-90-A4EE-01 16 812758 812758 C T MSLN Silent p.F26F 0.30 TCGA-90-A4EE-01 16 84043465 84043465 C T SLC38A8 Nonsense_Mutation p.W411* 0.15 TCGA-90-A4EE-01 17 10247299 10247299 G T MYH13 Missense_Mutation p.A571D 0.20 tolerated(0.4) benign(0.084) TCGA-90-A4EE-01 17 10584305 10584305 G C SCO1 3'UTR 0.17 TCGA-90-A4EE-01 17 1451609 1451609 A C PITPNA Silent p.A90A 0.23 TCGA-90-A4EE-01 17 16691350 16691350 T C CCDC144A 3'UTR 0.13 TCGA-90-A4EE-01 17 17698513 17698513 C T RAI1 Silent p.L751L 0.20 TCGA-90-A4EE-01 17 19445795 19445795 G A SLC47A1 Silent p.T75T 0.16 TCGA-90-A4EE-01 17 3118920 3118920 G T OR1A1 Missense_Mutation p.R2S 0.24 tolerated(0.57) benign(0.066) TCGA-90-A4EE-01 17 32964262 32964262 C T TMEM132E Missense_Mutation p.P656S 0.17 tolerated(0.29) possibly_damaging(0.757) TCGA-90-A4EE-01 17 34893626 34893626 C T PIGW Nonsense_Mutation p.Q226* 0.19 TCGA-90-A4EE-01 17 42295622 42295622 C A UBTF 5'UTR 0.15 TCGA-90-A4EE-01 17 46690508 46690508 C T HOXB8 3'UTR 0.20 TCGA-90-A4EE-01 17 48262746 48262746 T A COL1A1 3'UTR 0.26 TCGA-90-A4EE-01 17 54543853 54543853 C G ANKFN1 Nonsense_Mutation p.S568* 0.33 TCGA-90-A4EE-01 17 55123096 55123096 C A RNF126P1 RNA 0.31 TCGA-90-A4EE-01 17 61972438 61972438 C G CSH1 Missense_Mutation p.E200Q 0.26 deleterious(0) probably_damaging(0.95) TCGA-90-A4EE-01 17 65936578 65936578 C G BPTF Missense_Mutation p.Q2095E 0.17 probably_damaging(0.992) TCGA-90-A4EE-01 17 67047243 67047243 C A ABCA9 Missense_Mutation p.G9C 0.23 tolerated(0.4) benign(0.001) TCGA-90-A4EE-01 17 72862301 72862314 GGAGCACACACCTG - FDXR Frame_Shift_Del p.P192Rfs*13 0.18 TCGA-90-A4EE-01 17 7577153 7577153 C A TP53 Missense_Mutation p.G262V 0.29 deleterious(0) probably_damaging(0.994) TCGA-90-A4EE-01 17 7578457 7578457 C A TP53 Missense_Mutation p.R158L 0.22 deleterious(0) probably_damaging(0.986) TCGA-90-A4EE-01 17 76818049 76818049 G A USP36 Nonsense_Mutation p.Q243* 0.43 TCGA-90-A4EE-01 17 80789007 80789014 GTGCGCTG - ZNF750 Frame_Shift_Del p.S440Gfs*17 0.41 TCGA-90-A4EE-01 17 8274723 8274723 C T KRBA2 Missense_Mutation p.E44K 0.18 deleterious_low_confidence(0.02) benign(0.014) TCGA-90-A4EE-01 18 14752582 14752582 C A ANKRD30B Missense_Mutation p.A80D 0.16 deleterious(0) probably_damaging(0.999) TCGA-90-A4EE-01 18 19437145 19437145 G C MIB1 Missense_Mutation p.R907T 0.20 tolerated(0.22) benign(0.003) TCGA-90-A4EE-01 18 21153531 21153531 G A NPC1 Missense_Mutation p.S22L 0.25 deleterious_low_confidence(0.04) benign(0.005) TCGA-90-A4EE-01 18 31323205 31323205 T C ASXL3 Silent p.P1131P 0.25 TCGA-90-A4EE-01 18 334838 334838 G A COLEC12 Missense_Mutation p.P574S 0.30 tolerated(0.28) unknown(0) TCGA-90-A4EE-01 18 34298628 34298628 A G FHOD3 Missense_Mutation p.R948G 0.22 deleterious(0) benign(0.038) TCGA-90-A4EE-01 18 43914240 43914240 G T RNF165 Translation_Start_Site p.M1? 0.18 deleterious_low_confidence(0) possibly_damaging(0.775) TCGA-90-A4EE-01 18 50450157 50450157 G T DCC Nonsense_Mutation p.E260* 0.23 TCGA-90-A4EE-01 18 51025740 51025740 A T DCC Missense_Mutation p.E1324V 0.17 deleterious(0) possibly_damaging(0.833) TCGA-90-A4EE-01 18 51855722 51855722 C T STARD6 Missense_Mutation p.M158I 0.19 tolerated(0.12) benign(0.009) TCGA-90-A4EE-01 18 60998978 60998978 T C KDSR 3'UTR 0.18 TCGA-90-A4EE-01 18 70205435 70205435 C A CBLN2 Silent p.S217S 0.18 TCGA-90-A4EE-01 18 74153800 74153800 C A ZNF516 Missense_Mutation p.G404V 0.25 deleterious(0) probably_damaging(0.973) TCGA-90-A4EE-01 18 8296394 8296394 G A PTPRM Nonsense_Mutation p.W928* 0.21 TCGA-90-A4EE-01 19 12186329 12186329 G A ZNF844 Missense_Mutation p.E132K 0.26 tolerated(0.06) possibly_damaging(0.636) TCGA-90-A4EE-01 19 16268543 16268543 G C HSH2D 3'Flank 0.09 TCGA-90-A4EE-01 19 17283670 17283670 G C MYO9B Missense_Mutation p.V680L 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-90-A4EE-01 19 17412353 17412353 C T ABHD8 Missense_Mutation p.E25K 0.09 deleterious_low_confidence(0.02) benign(0.169) TCGA-90-A4EE-01 19 17836749 17836749 C T MAP1S Nonsense_Mutation p.Q186* 0.18 TCGA-90-A4EE-01 19 17836790 17836790 G T MAP1S Silent p.A199A 0.15 TCGA-90-A4EE-01 19 17942547 17942547 A C JAK3 Missense_Mutation p.L914R 0.26 deleterious(0.02) probably_damaging(1) TCGA-90-A4EE-01 19 18731234 18731234 A T TMEM59L Missense_Mutation p.Q306L 0.13 deleterious(0.04) possibly_damaging(0.841) TCGA-90-A4EE-01 19 18965421 18965421 G A UPF1 Missense_Mutation p.E390K 0.12 deleterious(0) possibly_damaging(0.753) TCGA-90-A4EE-01 19 20188858 20188858 C T ZNF90 5'UTR 0.27 TCGA-90-A4EE-01 19 36339978 36339978 C T NPHS1 Missense_Mutation p.M304I 0.10 tolerated(0.09) benign(0.145) TCGA-90-A4EE-01 19 37309777 37309777 C G ZNF790 Missense_Mutation p.G490A 0.17 tolerated(0.27) benign(0.025) TCGA-90-A4EE-01 19 37975921 37975921 G A ZNF570 Missense_Mutation p.G466E 0.18 deleterious(0) probably_damaging(1) TCGA-90-A4EE-01 19 40395805 40395805 G T FCGBP Missense_Mutation p.T2531K 0.12 possibly_damaging(0.598) TCGA-90-A4EE-01 19 40411784 40411784 A T FCGBP Missense_Mutation p.C1282S 0.17 probably_damaging(0.932) TCGA-90-A4EE-01 19 40512055 40512055 T G ZNF546 Missense_Mutation p.L46R 0.15 tolerated(0.2) possibly_damaging(0.766) TCGA-90-A4EE-01 19 40739544 40739544 C A AKT2 3'UTR 0.21 TCGA-90-A4EE-01 19 41019373 41019373 T C SPTBN4 Missense_Mutation p.C893R 0.36 deleterious(0) probably_damaging(0.999) TCGA-90-A4EE-01 19 41235226 41235226 A T ITPKC Missense_Mutation p.M459L 0.27 tolerated(0.16) benign(0.001) TCGA-90-A4EE-01 19 4171789 4171789 G A CREB3L3 Nonsense_Mutation p.W403* 0.23 TCGA-90-A4EE-01 19 43439572 43439572 G A PSG7 Silent p.F138F 0.19 TCGA-90-A4EE-01 19 43982196 43982196 C T PHLDB3 Intron 0.19 TCGA-90-A4EE-01 19 47912430 47912430 G A MEIS3 Nonsense_Mutation p.R262* 0.23 TCGA-90-A4EE-01 19 51175346 51175346 G T SHANK1 Missense_Mutation p.A868D 0.25 benign(0.044) TCGA-90-A4EE-01 19 51325105 51325105 G T KLK1 Silent p.S23S 0.17 TCGA-90-A4EE-01 19 53645350 53645350 G A ZNF347 Missense_Mutation p.S245F 0.21 tolerated(0.11) benign(0.004) TCGA-90-A4EE-01 19 54308626 54308626 C A NLRP12 Missense_Mutation p.R774S 0.15 deleterious(0.03) probably_damaging(0.93) TCGA-90-A4EE-01 19 54403578 54403578 C A PRKCG Missense_Mutation p.A458E 0.24 tolerated(0.05) possibly_damaging(0.462) TCGA-90-A4EE-01 19 54872733 54872733 G T LAIR1 Missense_Mutation p.P52T 0.25 tolerated(0.05) probably_damaging(0.995) TCGA-90-A4EE-01 19 55341628 55341628 C A KIR3DL1 Silent p.I411I 0.19 TCGA-90-A4EE-01 19 55693100 55693100 G A PTPRH 3'UTR 0.23 TCGA-90-A4EE-01 19 56935013 56935013 G T ZNF583 Missense_Mutation p.C329F 0.16 deleterious(0) probably_damaging(0.999) TCGA-90-A4EE-01 19 58718304 58718304 G T ZNF274 Missense_Mutation p.E158D 0.22 deleterious(0.04) benign(0.011) TCGA-90-A4EE-01 19 6222298 6222298 G A MLLT1 Missense_Mutation p.S315L 0.17 deleterious(0.02) benign(0.32) TCGA-90-A4EE-01 19 7585099 7585099 G T ZNF358 Missense_Mutation p.C324F 0.18 deleterious(0) probably_damaging(0.999) TCGA-90-A4EE-01 19 8661952 8661952 G A ADAMTS10 Missense_Mutation p.S320F 0.12 deleterious(0.02) probably_damaging(0.958) TCGA-90-A4EE-01 19 9088348 9088348 G C MUC16 Nonsense_Mutation p.S1156* 0.17 TCGA-90-A4EE-01 19 9203949 9203949 C A OR1M1 Missense_Mutation p.S10Y 0.24 deleterious(0.05) benign(0.08) TCGA-90-A4EE-01 1 112270021 112270021 G C FAM212B Missense_Mutation p.L155V 0.31 deleterious(0) probably_damaging(0.998) TCGA-90-A4EE-01 1 112998629 112998629 G T CTTNBP2NL Missense_Mutation p.R172L 0.26 tolerated(0.2) probably_damaging(0.999) TCGA-90-A4EE-01 1 12918918 12918918 G T PRAMEF2 Silent p.L18L 0.31 TCGA-90-A4EE-01 1 154184843 154184843 C G C1orf43 Missense_Mutation p.Q173H 0.18 tolerated(0.06) benign(0.009) TCGA-90-A4EE-01 1 155837840 155837840 G A SYT11 Missense_Mutation p.C40Y 0.07 tolerated(0.05) probably_damaging(0.998) TCGA-90-A4EE-01 1 155838010 155838010 G A SYT11 Missense_Mutation p.D97N 0.13 tolerated(0.37) benign(0.012) TCGA-90-A4EE-01 1 156554943 156554943 A T TTC24 Missense_Mutation p.E459V 0.47 tolerated_low_confidence(0.08) benign(0.018) TCGA-90-A4EE-01 1 156640299 156640299 C A NES Silent p.P1227P 0.16 TCGA-90-A4EE-01 1 157488510 157488510 A G FCRL5 Missense_Mutation p.L908P 0.14 deleterious(0) probably_damaging(0.994) TCGA-90-A4EE-01 1 158517704 158517704 C T OR6Y1 Missense_Mutation p.M64I 0.09 deleterious(0) possibly_damaging(0.77) TCGA-90-A4EE-01 1 158670283 158670283 G A OR6K2 Missense_Mutation p.H54Y 0.23 tolerated(0.09) possibly_damaging(0.515) TCGA-90-A4EE-01 1 159284100 159284100 G T OR10J3 Missense_Mutation p.T117K 0.27 deleterious(0.01) possibly_damaging(0.873) TCGA-90-A4EE-01 1 160097608 160097608 A G ATP1A2 Missense_Mutation p.T339A 0.16 deleterious(0.03) benign(0.409) TCGA-90-A4EE-01 1 160143426 160143426 T C ATP1A4 Missense_Mutation p.V637A 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-90-A4EE-01 1 161681965 161681965 C T FCRLA Silent p.N270N 0.22 TCGA-90-A4EE-01 1 171621200 171621200 C T MYOC Silent p.Q184Q 0.15 TCGA-90-A4EE-01 1 176050388 176050388 G A RFWD2 Nonsense_Mutation p.Q393* 0.13 TCGA-90-A4EE-01 1 197407865 197407865 C A CRB1 Intron 0.21 TCGA-90-A4EE-01 1 197411561 197411561 C T CRB1 Intron 0.33 TCGA-90-A4EE-01 1 200945956 200945956 G A KIF21B Missense_Mutation p.T1464M 0.47 tolerated(0.16) probably_damaging(0.982) TCGA-90-A4EE-01 1 201009006 201009006 C G CACNA1S Missense_Mutation p.D1859H 0.18 deleterious_low_confidence(0.03) benign(0.002) TCGA-90-A4EE-01 1 204226816 204226816 G A PLEKHA6 Missense_Mutation p.R397C 0.25 deleterious(0) probably_damaging(0.985) TCGA-90-A4EE-01 1 204226817 204226817 G A PLEKHA6 Silent p.F396F 0.24 TCGA-90-A4EE-01 1 207640247 207640247 C A CR2 Silent p.T145T 0.11 TCGA-90-A4EE-01 1 210857224 210857224 A T KCNH1 Missense_Mutation p.V790E 0.10 deleterious_low_confidence(0.01) benign(0.027) TCGA-90-A4EE-01 1 216219914 216219914 G A USH2A Missense_Mutation p.P2062S 0.18 probably_damaging(0.963) TCGA-90-A4EE-01 1 216498781 216498781 G C USH2A Missense_Mutation p.P337A 0.26 benign(0.034) TCGA-90-A4EE-01 1 229730487 229730487 T A TAF5L Missense_Mutation p.T443S 0.17 deleterious(0.04) possibly_damaging(0.899) TCGA-90-A4EE-01 1 2319753 2319753 C G MORN1 Missense_Mutation p.D58H 0.29 deleterious(0) probably_damaging(1) TCGA-90-A4EE-01 1 23346015 23346015 G C KDM1A 5'UTR 0.42 TCGA-90-A4EE-01 1 234527290 234527290 G C TARBP1 3'UTR 0.10 TCGA-90-A4EE-01 1 235505383 235505383 G A GGPS1 Missense_Mutation p.E67K 0.16 deleterious(0) probably_damaging(1) TCGA-90-A4EE-01 1 237494228 237494228 C G RYR2 Silent p.L73L 0.13 TCGA-90-A4EE-01 1 237586443 237586443 C A RYR2 Silent p.V300V 0.29 TCGA-90-A4EE-01 1 240656302 240656302 C T GREM2 Missense_Mutation p.M158I 0.15 tolerated(0.72) benign(0.006) TCGA-90-A4EE-01 1 247614439 247614439 A T OR2B11 Nonsense_Mutation p.Y282* 0.14 TCGA-90-A4EE-01 1 248309085 248309085 A G OR2M5 Silent p.A212A 0.17 TCGA-90-A4EE-01 1 248402975 248402975 G A OR2M4 Missense_Mutation p.G249R 0.16 deleterious(0.01) probably_damaging(0.977) TCGA-90-A4EE-01 1 248403038 248403038 C T OR2M4 Nonsense_Mutation p.Q270* 0.18 TCGA-90-A4EE-01 1 29064124 29064124 C T YTHDF2 Intron 0.16 TCGA-90-A4EE-01 1 3688051 3688051 C T CCDC27 Silent p.F645F 0.27 TCGA-90-A4EE-01 1 46509407 46509407 C A PIK3R3 Missense_Mutation p.D442Y 0.16 deleterious(0) probably_damaging(1) TCGA-90-A4EE-01 1 79392745 79392745 C T ELTD1 Silent p.K303K 0.28 TCGA-90-A4EE-01 1 94490509 94490509 C G ABCA4 Splice_Site p.X1545_splice 0.34 TCGA-90-A4EE-01 20 10603339 10603339 C G SLX4IP Missense_Mutation p.T180R 0.15 tolerated(0.09) benign(0.034) TCGA-90-A4EE-01 20 126348 126348 G T DEFB126 3'UTR 0.20 TCGA-90-A4EE-01 20 15948266 15948266 C T MACROD2 Missense_Mutation p.H326Y 0.18 tolerated_low_confidence(0.32) benign(0.108) TCGA-90-A4EE-01 20 23345078 23345078 G C GZF1 Missense_Mutation p.E20Q 0.08 deleterious(0.02) probably_damaging(0.998) TCGA-90-A4EE-01 20 23350283 23350283 C T GZF1 Missense_Mutation p.R564C 0.19 deleterious(0) probably_damaging(0.982) TCGA-90-A4EE-01 20 31657715 31657715 C A BPIFB3 Missense_Mutation p.L391M 0.19 deleterious(0.04) probably_damaging(0.971) TCGA-90-A4EE-01 20 31672710 31672710 G A BPIFB4 Silent p.V230V 0.15 TCGA-90-A4EE-01 20 3212067 3212067 C A SLC4A11 Missense_Mutation p.R329I 0.19 deleterious(0.02) possibly_damaging(0.891) TCGA-90-A4EE-01 20 32328780 32328780 G T ZNF341 Missense_Mutation p.G35V 0.20 tolerated(0.09) benign(0.394) TCGA-90-A4EE-01 20 36641985 36641985 G A TTI1 Silent p.L78L 0.26 TCGA-90-A4EE-01 20 44596527 44596527 G A ZNF335 Silent p.P220P 0.19 TCGA-90-A4EE-01 20 47266060 47266060 G A PREX1 Missense_Mutation p.P1028L 0.16 deleterious(0) probably_damaging(0.99) TCGA-90-A4EE-01 20 47592675 47592675 G A ARFGEF2 Missense_Mutation p.D633N 0.21 tolerated(0.81) benign(0.005) TCGA-90-A4EE-01 20 58381200 58381200 G C PHACTR3 Missense_Mutation p.D427H 0.19 deleterious(0.02) probably_damaging(0.96) TCGA-90-A4EE-01 20 60504831 60504831 G T CDH4 Missense_Mutation p.A724S 0.19 tolerated(0.47) possibly_damaging(0.563) TCGA-90-A4EE-01 20 62321118 62321118 G T RTEL1 Nonsense_Mutation p.E705* 0.18 TCGA-90-A4EE-01 20 8696877 8696877 C A PLCB1 Intron 0.31 TCGA-90-A4EE-01 21 10862657 10862657 C T IGHV1OR21-1 Silent p.V12V 0.07 TCGA-90-A4EE-01 21 10862784 10862784 G T IGHV1OR21-1 Missense_Mutation p.G27V 0.09 deleterious(0) probably_damaging(0.996) TCGA-90-A4EE-01 21 10921933 10921933 C T TPTE Splice_Site p.X363_splice 0.14 TCGA-90-A4EE-01 21 41539154 41539154 G T DSCAM Silent p.V1003V 0.19 TCGA-90-A4EE-01 21 46074256 46074256 G T KRTAP12-4 Nonsense_Mutation p.C92* 0.20 TCGA-90-A4EE-01 22 16287760 16287760 G A POTEH Silent p.N42N 0.26 TCGA-90-A4EE-01 22 24584239 24584239 G A SUSD2 Silent p.A796A 0.29 TCGA-90-A4EE-01 22 36623502 36623502 A G APOL2 Missense_Mutation p.L321P 0.33 deleterious(0) probably_damaging(1) TCGA-90-A4EE-01 22 37272103 37272103 C T NCF4 Missense_Mutation p.L346F 0.20 deleterious_low_confidence(0) possibly_damaging(0.587) TCGA-90-A4EE-01 22 37603847 37603847 G A SSTR3 5'UTR 0.31 TCGA-90-A4EE-01 22 37622718 37622718 G A RAC2 Missense_Mutation p.L192F 0.47 tolerated_low_confidence(0.11) benign(0.072) TCGA-90-A4EE-01 22 38875612 38875612 C G KDELR3 Silent p.L69L 0.31 TCGA-90-A4EE-01 22 44276766 44276766 C T PNPLA5 Splice_Site p.X400_splice 0.17 TCGA-90-A4EE-01 2 131116461 131116461 G T PTPN18 Missense_Mutation p.A39S 0.25 tolerated(0.28) benign(0.067) TCGA-90-A4EE-01 2 135966478 135966478 G C ZRANB3 Missense_Mutation p.L856V 0.22 tolerated(0.35) benign(0.078) TCGA-90-A4EE-01 2 16085989 16085989 C G MYCN Missense_Mutation p.L389V 0.17 deleterious(0) probably_damaging(0.999) TCGA-90-A4EE-01 2 165365286 165365286 T C GRB14 Missense_Mutation p.H298R 0.27 deleterious(0.02) possibly_damaging(0.532) TCGA-90-A4EE-01 2 170068619 170068619 T C LRP2 Missense_Mutation p.T2047A 0.32 possibly_damaging(0.606) TCGA-90-A4EE-01 2 17919515 17919515 A G SMC6 Missense_Mutation p.L106S 0.16 deleterious(0) probably_damaging(0.991) TCGA-90-A4EE-01 2 179583518 179583518 A T TTN Missense_Mutation p.L8137M 0.25 TCGA-90-A4EE-01 2 179641672 179641672 G T TTN Missense_Mutation p.T1640N 0.11 TCGA-90-A4EE-01 2 179702276 179702276 C T CCDC141 Missense_Mutation p.E1224K 0.27 deleterious(0.01) possibly_damaging(0.782) TCGA-90-A4EE-01 2 205989065 205989065 G A PARD3B Missense_Mutation p.G394S 0.23 deleterious(0) probably_damaging(1) TCGA-90-A4EE-01 2 211521337 211521337 G T CPS1 Missense_Mutation p.S1222I 0.15 deleterious(0.02) possibly_damaging(0.682) TCGA-90-A4EE-01 2 237074779 237074779 G C GBX2 Silent p.T275T 0.20 TCGA-90-A4EE-01 2 44145486 44145486 T A LRPPRC Missense_Mutation p.E983V 0.37 deleterious(0) probably_damaging(1) TCGA-90-A4EE-01 2 74683248 74683248 C G INO80B Missense_Mutation p.S130C 0.16 deleterious(0.02) possibly_damaging(0.892) TCGA-90-A4EE-01 2 80772106 80772106 G C CTNNA2 Splice_Site p.X431_splice 0.21 TCGA-90-A4EE-01 2 85808758 85808758 G C VAMP8 Silent p.V74V 0.18 TCGA-90-A4EE-01 2 86707384 86707384 C G KDM3A Missense_Mutation p.S804C 0.22 deleterious(0.01) benign(0.001) TCGA-90-A4EE-01 2 88857258 88857258 T A EIF2AK3 Missense_Mutation p.N1116I 0.26 deleterious_low_confidence(0) benign(0.216) TCGA-90-A4EE-01 3 100295837 100295837 A G TMEM45A Missense_Mutation p.E268G 0.15 tolerated(0.05) benign(0.382) TCGA-90-A4EE-01 3 101572352 101572352 G C NFKBIZ Missense_Mutation p.D328H 0.06 tolerated_low_confidence(0.05) benign(0.021) TCGA-90-A4EE-01 3 111993860 111993860 C G SLC9C1 Missense_Mutation p.S166T 0.14 tolerated(0.79) possibly_damaging(0.699) TCGA-90-A4EE-01 3 113684173 113684173 C G KIAA1407 Missense_Mutation p.K880N 0.20 deleterious(0.01) possibly_damaging(0.853) TCGA-90-A4EE-01 3 119190185 119190185 G A POGLUT1 Missense_Mutation p.R69Q 0.18 tolerated(0.37) benign(0.009) TCGA-90-A4EE-01 3 120400987 120400987 C T HGD 5'UTR 0.14 TCGA-90-A4EE-01 3 121134714 121134714 G A STXBP5L Missense_Mutation p.G1066E 0.09 deleterious(0) probably_damaging(0.99) TCGA-90-A4EE-01 3 125282545 125282545 C G OSBPL11 Silent p.A337A 0.27 TCGA-90-A4EE-01 3 128060441 128060441 G C EEFSEC Missense_Mutation p.L384F 0.14 tolerated(0.05) benign(0.163) TCGA-90-A4EE-01 3 128612476 128612476 G T ACAD9 Missense_Mutation p.G108V 0.31 deleterious(0) probably_damaging(1) TCGA-90-A4EE-01 3 134369801 134369801 A T KY Translation_Start_Site p.M1? 0.17 deleterious_low_confidence(0) probably_damaging(0.911) TCGA-90-A4EE-01 3 147114215 147114215 A G ZIC4 Missense_Mutation p.S88P 0.16 tolerated(0.34) benign(0.193) TCGA-90-A4EE-01 3 148562265 148562265 G A CPB1 Missense_Mutation p.A193T 0.18 deleterious(0.02) probably_damaging(0.998) TCGA-90-A4EE-01 3 150419912 150419912 C G FAM194A Missense_Mutation p.D153H 0.16 tolerated(0.05) probably_damaging(0.935) TCGA-90-A4EE-01 3 151112617 151112617 C G MED12L Missense_Mutation p.R1893G 0.12 tolerated_low_confidence(0.44) benign(0.327) TCGA-90-A4EE-01 3 154147311 154147311 G T GPR149 Missense_Mutation p.L32M 0.20 deleterious(0.05) possibly_damaging(0.682) TCGA-90-A4EE-01 3 156711009 156711009 T C RP11-6F2.3 5'Flank 0.16 TCGA-90-A4EE-01 3 161147188 161147188 G T RP11-3P17.4 RNA 0.35 TCGA-90-A4EE-01 3 169572602 169572602 C G LRRC31 Silent p.L330L 0.23 TCGA-90-A4EE-01 3 17052374 17052374 G T PLCL2 Missense_Mutation p.E386D 0.16 tolerated(0.4) benign(0.052) TCGA-90-A4EE-01 3 183097193 183097193 C T MCF2L2 Missense_Mutation p.R56Q 0.16 deleterious(0.04) possibly_damaging(0.477) TCGA-90-A4EE-01 3 19575020 19575020 C T KCNH8 Missense_Mutation p.S918F 0.31 tolerated_low_confidence(0.13) possibly_damaging(0.549) TCGA-90-A4EE-01 3 197444889 197444889 C G KIAA0226 Missense_Mutation p.D60H 0.19 deleterious(0.01) probably_damaging(1) TCGA-90-A4EE-01 3 38347784 38347784 C T SLC22A14 Silent p.F89F 0.27 TCGA-90-A4EE-01 3 46008600 46008600 C T FYCO1 Silent p.Q742Q 0.19 TCGA-90-A4EE-01 3 47282491 47282491 G A KIF9 Missense_Mutation p.P575L 0.17 tolerated(0.06) probably_damaging(0.978) TCGA-90-A4EE-01 3 7620369 7620369 G C GRM7 Silent p.V592V 0.25 TCGA-90-A4EE-01 3 98002107 98002107 G T OR5H2 Missense_Mutation p.D126Y 0.11 deleterious(0.01) probably_damaging(0.978) TCGA-90-A4EE-01 4 100458866 100458866 T C C4orf17 Missense_Mutation p.L196P 0.29 deleterious(0) probably_damaging(1) TCGA-90-A4EE-01 4 106157350 106157350 A T TET2 Nonsense_Mutation p.K751* 0.25 TCGA-90-A4EE-01 4 126411349 126411349 A T FAT4 Missense_Mutation p.T4458S 0.24 benign(0.007) TCGA-90-A4EE-01 4 155158215 155158215 C T DCHS2 Missense_Mutation p.R2075K 0.30 tolerated(0.61) benign(0.007) TCGA-90-A4EE-01 4 164271499 164271499 C T NPY5R Missense_Mutation p.S25F 0.35 tolerated(0.39) benign(0.002) TCGA-90-A4EE-01 4 165961265 165961265 C A TRIM60 Missense_Mutation p.S14Y 0.20 deleterious(0) possibly_damaging(0.73) TCGA-90-A4EE-01 4 167675599 167675599 A T SPOCK3 Intron 0.25 TCGA-90-A4EE-01 4 169196534 169196534 C A DDX60 Missense_Mutation p.D756Y 0.23 deleterious(0) probably_damaging(1) TCGA-90-A4EE-01 4 174448379 174448379 C A HAND2 3'UTR 0.15 TCGA-90-A4EE-01 4 41984295 41984295 G A DCAF4L1 Silent p.S162S 0.25 TCGA-90-A4EE-01 4 56823408 56823408 T C CEP135 Silent p.I164I 0.28 TCGA-90-A4EE-01 4 66197741 66197741 G T EPHA5 Missense_Mutation p.F986L 0.21 tolerated(0.07) probably_damaging(0.977) TCGA-90-A4EE-01 5 1038002 1038002 T A NKD2 Missense_Mutation p.D290E 0.08 tolerated(1) possibly_damaging(0.603) TCGA-90-A4EE-01 5 118728837 118728837 G C TNFAIP8 Missense_Mutation p.D120H 0.21 deleterious(0) benign(0.319) TCGA-90-A4EE-01 5 130843778 130843778 C A RAPGEF6 Nonsense_Mutation p.E310* 0.29 TCGA-90-A4EE-01 5 140731472 140731472 G T PCDHGB1 Missense_Mutation p.G549C 0.24 tolerated(0.14) probably_damaging(0.998) TCGA-90-A4EE-01 5 140745472 140745472 G C PCDHGA5 Missense_Mutation p.L525F 0.25 tolerated_low_confidence(1) benign(0.006) TCGA-90-A4EE-01 5 169504758 169504758 G A DOCK2 Silent p.L1637L 0.32 TCGA-90-A4EE-01 5 174953811 174953811 G T SFXN1 3'UTR 0.14 TCGA-90-A4EE-01 5 1879724 1879724 C T IRX4 Silent p.P210P 0.14 TCGA-90-A4EE-01 5 2752818 2752818 G A C5orf38 Missense_Mutation p.E95K 0.09 tolerated_low_confidence(0.14) benign(0) TCGA-90-A4EE-01 5 33588863 33588863 C A ADAMTS12 Silent p.G902G 0.42 TCGA-90-A4EE-01 5 33624450 33624450 C T ADAMTS12 Missense_Mutation p.G677S 0.22 deleterious(0.02) possibly_damaging(0.784) TCGA-90-A4EE-01 5 41057376 41057376 G T MROH2B Silent p.L281L 0.30 TCGA-90-A4EE-01 5 5182364 5182364 G A ADAMTS16 Missense_Mutation p.D237N 0.13 tolerated(0.33) benign(0.001) TCGA-90-A4EE-01 5 6378636 6378636 A T MED10 5'UTR 0.13 TCGA-90-A4EE-01 5 66396373 66396373 G A MAST4 Silent p.E341E 0.19 TCGA-90-A4EE-01 5 78416249 78416249 G C BHMT Missense_Mutation p.G121A 0.24 tolerated(0.06) benign(0.106) TCGA-90-A4EE-01 5 83356194 83356194 C T EDIL3 Silent p.R354R 0.22 TCGA-90-A4EE-01 6 107854729 107854729 C T SOBP Missense_Mutation p.S163F 0.20 deleterious(0) probably_damaging(0.999) TCGA-90-A4EE-01 6 109814561 109814561 A T AK9 3'UTR 0.20 TCGA-90-A4EE-01 6 110301532 110301532 A G GPR6 3'UTR 0.26 TCGA-90-A4EE-01 6 110644018 110644018 C T METTL24 Missense_Mutation p.E126K 0.19 tolerated(0.16) possibly_damaging(0.831) TCGA-90-A4EE-01 6 117853507 117853507 G C DCBLD1 Missense_Mutation p.G224R 0.22 deleterious(0) probably_damaging(0.979) TCGA-90-A4EE-01 6 122779760 122779760 T C SERINC1 Missense_Mutation p.T36A 0.16 deleterious(0) possibly_damaging(0.868) TCGA-90-A4EE-01 6 134212935 134212935 T A TCF21 Missense_Mutation p.S179T 0.24 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-90-A4EE-01 6 134583028 134583028 G C SGK1 Intron 0.14 TCGA-90-A4EE-01 6 137112856 137112856 T A MAP3K5 Missense_Mutation p.Y147F 0.20 deleterious(0.01) benign(0.004) TCGA-90-A4EE-01 6 150343258 150343258 C G RAET1L Missense_Mutation p.K69N 0.21 tolerated(0.92) benign(0.085) TCGA-90-A4EE-01 6 151286104 151286104 G C MTHFD1L Splice_Site p.X649_splice 0.16 TCGA-90-A4EE-01 6 151355694 151355694 C T MTHFD1L Silent p.L884L 0.19 TCGA-90-A4EE-01 6 151773576 151773576 T C C6orf211 5'UTR 0.22 TCGA-90-A4EE-01 6 152651549 152651549 G C SYNE1 Silent p.T4757T 0.17 TCGA-90-A4EE-01 6 153296313 153296313 G A FBXO5 Missense_Mutation p.P183S 0.13 deleterious(0.05) benign(0.077) TCGA-90-A4EE-01 6 153365141 153365141 G T RGS17 Missense_Mutation p.Q5K 0.24 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-90-A4EE-01 6 157522470 157522470 A G ARID1B Missense_Mutation p.Q1581R 0.19 benign(0.442) TCGA-90-A4EE-01 6 163899837 163899837 G T QKI Missense_Mutation p.G104V 0.16 deleterious(0) probably_damaging(0.958) TCGA-90-A4EE-01 6 170592967 170592967 C T DLL1 Missense_Mutation p.C467Y 0.18 deleterious(0) probably_damaging(1) TCGA-90-A4EE-01 6 18121629 18121629 C T NHLRC1 3'UTR 0.29 TCGA-90-A4EE-01 6 18122639 18122639 C G NHLRC1 Missense_Mutation p.E67Q 0.21 tolerated(0.06) probably_damaging(0.997) TCGA-90-A4EE-01 6 25811630 25811630 G A SLC17A1 Missense_Mutation p.P392S 0.14 deleterious(0) probably_damaging(1) TCGA-90-A4EE-01 6 25855425 25855425 A G SLC17A3 Missense_Mutation p.I220T 0.30 tolerated(0.05) benign(0.035) TCGA-90-A4EE-01 6 26247005 26247005 G C HIST1H4G Missense_Mutation p.I67M 0.31 deleterious(0) possibly_damaging(0.706) TCGA-90-A4EE-01 6 27792156 27792156 T C HIST1H4J Missense_Mutation p.M85T 0.16 tolerated(0.1) benign(0.186) TCGA-90-A4EE-01 6 29692986 29692986 G A HLA-F Silent p.Q263Q 0.16 TCGA-90-A4EE-01 6 30708359 30708359 G A FLOT1 Missense_Mutation p.H162Y 0.12 deleterious(0.03) possibly_damaging(0.53) TCGA-90-A4EE-01 6 35473868 35473868 G A TULP1 Missense_Mutation p.T304M 0.22 deleterious(0.05) probably_damaging(0.935) TCGA-90-A4EE-01 6 36709969 36709969 C T CPNE5 3'UTR 0.26 TCGA-90-A4EE-01 6 38905961 38905961 A T DNAH8 Silent p.S3708S 0.19 TCGA-90-A4EE-01 6 44250040 44250040 T C TCTE1 Missense_Mutation p.N368S 0.17 deleterious(0.02) possibly_damaging(0.562) TCGA-90-A4EE-01 6 54254801 54254801 G T TINAG 3'UTR 0.18 TCGA-90-A4EE-01 6 55441902 55441902 C G HMGCLL1 Missense_Mutation p.A58P 0.17 tolerated_low_confidence(0.34) benign(0) TCGA-90-A4EE-01 6 70408979 70408979 C G LMBRD1 Missense_Mutation p.A432P 0.19 deleterious(0.01) possibly_damaging(0.453) TCGA-90-A4EE-01 6 72984097 72984097 C G RIMS1 Silent p.P1148P 0.29 TCGA-90-A4EE-01 6 80744986 80744986 A T TTK Missense_Mutation p.E592D 0.15 deleterious(0) benign(0.251) TCGA-90-A4EE-01 6 87725014 87725014 C T HTR1E 5'UTR 0.19 TCGA-90-A4EE-01 6 96652054 96652054 G C FUT9 Silent p.V341V 0.24 TCGA-90-A4EE-01 7 101845336 101845336 C G CUX1 Missense_Mutation p.S931C 0.18 tolerated(0.09) unknown(0) TCGA-90-A4EE-01 7 101845472 101845472 C A CUX1 Silent p.I976I 0.21 TCGA-90-A4EE-01 7 101845484 101845484 G C CUX1 Missense_Mutation p.K980N 0.21 deleterious(0) unknown(0) TCGA-90-A4EE-01 7 102047894 102047894 G C PRKRIP1 Missense_Mutation p.E136Q 0.13 tolerated(0.3) possibly_damaging(0.728) TCGA-90-A4EE-01 7 103132434 103132434 G C RELN Missense_Mutation p.H3137D 0.12 tolerated(0.11) benign(0.012) TCGA-90-A4EE-01 7 106545864 106545864 G A PIK3CG 3'UTR 0.19 TCGA-90-A4EE-01 7 107706869 107706869 C T LAMB4 Missense_Mutation p.E875K 0.14 tolerated(0.5) benign(0.16) TCGA-90-A4EE-01 7 119914926 119914926 T A KCND2 Silent p.T80T 0.20 TCGA-90-A4EE-01 7 123593891 123593891 A G SPAM1 Silent p.T89T 0.18 TCGA-90-A4EE-01 7 124404824 124404824 G A GPR37 Silent p.A69A 0.17 TCGA-90-A4EE-01 7 135303243 135303243 G T NUP205 Silent p.S1285S 0.20 TCGA-90-A4EE-01 7 138263999 138263999 G A TRIM24 Silent p.Q769Q 0.17 TCGA-90-A4EE-01 7 139661923 139661923 G T TBXAS1 Missense_Mutation p.G389V 0.16 deleterious(0) probably_damaging(0.998) TCGA-90-A4EE-01 7 140069429 140069429 G A SLC37A3 Silent p.L84L 0.18 TCGA-90-A4EE-01 7 141491076 141491076 T C TAS2R5 3'UTR 0.17 TCGA-90-A4EE-01 7 142651315 142651315 C T KEL Missense_Mutation p.A294T 0.29 tolerated(0.23) benign(0.05) TCGA-90-A4EE-01 7 143657229 143657229 C T OR2F1 Missense_Mutation p.H56Y 0.23 deleterious(0) benign(0.089) TCGA-90-A4EE-01 7 148702451 148702451 C T PDIA4 Missense_Mutation p.R435Q 0.21 deleterious(0) probably_damaging(1) TCGA-90-A4EE-01 7 150171682 150171682 T C GIMAP8 Missense_Mutation p.M422T 0.17 deleterious(0.04) benign(0.446) TCGA-90-A4EE-01 7 151945559 151945559 C A KMT2C Nonsense_Mutation p.E654* 0.28 TCGA-90-A4EE-01 7 157475623 157475623 T G PTPRN2 Missense_Mutation p.K599Q 0.12 tolerated(0.21) benign(0.051) TCGA-90-A4EE-01 7 2405976 2405976 G A EIF3B Silent p.L394L 0.21 TCGA-90-A4EE-01 7 2752406 2752406 G A AMZ1 Missense_Mutation p.R464H 0.18 deleterious_low_confidence(0.05) benign(0.014) TCGA-90-A4EE-01 7 31793107 31793107 G C PDE1C Missense_Mutation p.P734R 0.23 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-90-A4EE-01 7 31862830 31862830 C T PDE1C Missense_Mutation p.R540Q 0.22 tolerated(0.07) probably_damaging(0.936) TCGA-90-A4EE-01 7 31864488 31864488 G A PDE1C Missense_Mutation p.R527C 0.19 deleterious(0) probably_damaging(0.95) TCGA-90-A4EE-01 7 33063650 33063650 C T NT5C3A Splice_Site p.X108_splice 0.19 TCGA-90-A4EE-01 7 34094867 34094867 G T BMPER Silent p.V293V 0.20 TCGA-90-A4EE-01 7 50611685 50611685 C A DDC Silent p.V33V 0.19 TCGA-90-A4EE-01 7 57528697 57528697 C G ZNF716 Missense_Mutation p.T177R 0.27 tolerated(0.29) possibly_damaging(0.885) TCGA-90-A4EE-01 7 6064415 6064415 C T EIF2AK1 Silent p.Q594Q 0.10 TCGA-90-A4EE-01 7 73790820 73790820 G C CLIP2 Missense_Mutation p.A697P 0.25 deleterious(0.01) possibly_damaging(0.696) TCGA-90-A4EE-01 7 91699371 91699372 - A AKAP9 Frame_Shift_Ins p.T2122Nfs*6 0.17 TCGA-90-A4EE-01 7 94057646 94057646 G T COL1A2 Missense_Mutation p.A1190S 0.19 unknown(0) TCGA-90-A4EE-01 7 98563377 98563377 G C TRRAP Missense_Mutation p.M2338I 0.24 possibly_damaging(0.667) TCGA-90-A4EE-01 7 99129679 99129679 A G ZKSCAN5 Missense_Mutation p.H776R 0.18 tolerated(0.08) benign(0.013) TCGA-90-A4EE-01 8 104427083 104427083 G T SLC25A32 Missense_Mutation p.A28E 0.41 deleterious(0) probably_damaging(0.991) TCGA-90-A4EE-01 8 105261032 105261032 C A RIMS2 Missense_Mutation p.P1194T 0.11 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-90-A4EE-01 8 105503106 105503106 G T LRP12 Missense_Mutation p.S792Y 0.29 deleterious_low_confidence(0.03) possibly_damaging(0.73) TCGA-90-A4EE-01 8 113275994 113275994 C A CSMD3 Nonsense_Mutation p.G3246* 0.12 TCGA-90-A4EE-01 8 11995831 11995831 G T USP17L2 Missense_Mutation p.Q147K 0.20 tolerated(1) benign(0.366) TCGA-90-A4EE-01 8 133036659 133036659 G C OC90 3'UTR 0.22 TCGA-90-A4EE-01 8 13948014 13948014 G T SGCZ Missense_Mutation p.L293I 0.19 deleterious(0.02) probably_damaging(0.996) TCGA-90-A4EE-01 8 143623626 143623626 G A BAI1 Missense_Mutation p.S1344N 0.19 tolerated(0.07) benign(0.213) TCGA-90-A4EE-01 8 26722064 26722064 C G ADRA1A Missense_Mutation p.R141S 0.19 deleterious(0.01) possibly_damaging(0.794) TCGA-90-A4EE-01 8 28627504 28627504 T C INTS9 Missense_Mutation p.R568G 0.11 tolerated(0.12) benign(0.07) TCGA-90-A4EE-01 8 39468048 39468048 G T ADAM18 Missense_Mutation p.R115S 0.18 deleterious(0.01) probably_damaging(1) TCGA-90-A4EE-01 8 55538171 55538171 G C RP1 Missense_Mutation p.E577Q 0.11 tolerated(0.09) benign(0.338) TCGA-90-A4EE-01 8 67734635 67734635 G A SGK3 Missense_Mutation p.D120N 0.18 tolerated(0.1) benign(0.083) TCGA-90-A4EE-01 8 70570765 70570765 G A SULF1 Missense_Mutation p.G871S 0.14 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-90-A4EE-01 8 77762500 77762500 T C ZFHX4 Missense_Mutation p.M1289T 0.11 benign(0.092) TCGA-90-A4EE-01 8 90936984 90936984 C G OSGIN2 Missense_Mutation p.H292D 0.27 tolerated(0.52) benign(0.038) TCGA-90-A4EE-01 8 90955544 90955544 A - NBN Frame_Shift_Del p.L708* 0.21 TCGA-90-A4EE-01 8 91075333 91075333 C - CALB1 Frame_Shift_Del p.D199Ifs*8 0.15 TCGA-90-A4EE-01 9 115451851 115451851 C A INIP Missense_Mutation p.A59S 0.32 tolerated(0.33) probably_damaging(0.962) TCGA-90-A4EE-01 9 116778448 116778448 G C ZNF618 Missense_Mutation p.K238N 0.33 tolerated_low_confidence(0.45) benign(0.027) TCGA-90-A4EE-01 9 131223241 131223241 G A ODF2 Missense_Mutation p.M48I 0.22 tolerated(0.23) benign(0.219) TCGA-90-A4EE-01 9 136226921 136226921 C T SURF2 Missense_Mutation p.R145C 0.38 benign(0.018) TCGA-90-A4EE-01 9 21206388 21206388 C G IFNA10 3'UTR 0.18 TCGA-90-A4EE-01 9 21971196 21971197 - A CDKN2A Frame_Shift_Ins p.M54Ifs*66 0.30 TCGA-90-A4EE-01 9 34343425 34343425 C G NUDT2 Missense_Mutation p.S144C 0.29 deleterious(0) benign(0.044) TCGA-90-A4EE-01 9 35076785 35076785 G C FANCG Missense_Mutation p.S287C 0.22 deleterious(0.02) benign(0.078) TCGA-90-A4EE-01 9 90499952 90499952 C T SPATA31E1 Missense_Mutation p.P184S 0.24 deleterious(0.04) benign(0.017) TCGA-90-A4EE-01 9 98775092 98775092 G T ERCC6L2 Missense_Mutation p.L392F 0.26 tolerated(0.48) benign(0.007) TCGA-90-A4EE-01 X 101096486 101096486 C A NXF5 Missense_Mutation p.K95N 0.42 deleterious(0.01) benign(0.028) TCGA-90-A4EE-01 X 10176360 10176360 C A CLCN4 Silent p.V373V 0.39 TCGA-90-A4EE-01 X 114250332 114250332 G A IL13RA2 Silent p.L49L 0.31 TCGA-90-A4EE-01 X 123517598 123517598 G C TENM1 Missense_Mutation p.P2395A 0.35 deleterious(0) probably_damaging(0.98) TCGA-90-A4EE-01 X 123657461 123657461 G C TENM1 Missense_Mutation p.A929G 0.39 deleterious(0.01) benign(0.063) TCGA-90-A4EE-01 X 129281553 129281553 G A AIFM1 Missense_Mutation p.P174S 0.20 deleterious(0) probably_damaging(1) TCGA-90-A4EE-01 X 130222785 130222785 G C ARHGAP36 3'UTR 0.65 TCGA-90-A4EE-01 X 130678847 130678847 C A OR13H1 Missense_Mutation p.P267H 0.57 tolerated(0.12) benign(0.035) TCGA-90-A4EE-01 X 13607674 13607674 G T EGFL6 Splice_Site p.X25_splice 0.25 TCGA-90-A4EE-01 X 142803684 142803684 C A SPANXN2 Splice_Site p.X26_splice 0.53 TCGA-90-A4EE-01 X 151092740 151092740 C A MAGEA4 Missense_Mutation p.L202I 0.61 tolerated(0.12) probably_damaging(0.938) TCGA-90-A4EE-01 X 151366117 151366117 G A GABRA3 Missense_Mutation p.R307C 0.67 deleterious(0) probably_damaging(0.998) TCGA-90-A4EE-01 X 153138099 153138099 G A L1CAM Missense_Mutation p.P49S 0.40 tolerated(0.42) probably_damaging(1) TCGA-90-A4EE-01 X 1742086 1742086 G T ASMT Missense_Mutation p.G42W 0.17 deleterious(0.01) probably_damaging(0.96) TCGA-90-A4EE-01 X 46513120 46513120 G A SLC9A7 Silent p.F356F 0.34 TCGA-90-A4EE-01 X 47106743 47106743 G T USP11 Nonsense_Mutation p.E864* 0.49 TCGA-90-A4EE-01 X 54263863 54263863 T A WNK3 Missense_Mutation p.Q1379L 0.31 tolerated(0.13) benign(0.131) TCGA-90-A4EE-01 X 7811287 7811287 A C VCX Missense_Mutation p.T15P 0.20 tolerated_low_confidence(0.22) unknown(0) TCGA-90-A4EE-01 X 8998310 8998310 T C FAM9B Silent p.Q91Q 0.38 TCGA-90-A4EE-01 X 92964748 92964748 C T FAM133A Silent p.S110S 0.42 TCGA-90-A59Q-01 10 114925644 114925644 G T TCF7L2 Missense_Mutation p.Q574H 0.10 tolerated_low_confidence(0.61) possibly_damaging(0.776) TCGA-90-A59Q-01 10 118084818 118084818 G T CCDC172 Missense_Mutation p.R28M 0.30 deleterious(0) probably_damaging(0.959) TCGA-90-A59Q-01 10 124001470 124001470 T C TACC2 Intron 0.25 TCGA-90-A59Q-01 10 129839255 129839255 G T PTPRE Splice_Site p.X37_splice 0.12 TCGA-90-A59Q-01 10 134942905 134942905 C A GPR123 Missense_Mutation p.P525T 0.12 tolerated(0.23) benign(0.009) TCGA-90-A59Q-01 10 24874703 24874703 T C ARHGAP21 Silent p.P1505P 0.22 TCGA-90-A59Q-01 10 35468210 35468210 T G CREM Intron 0.16 TCGA-90-A59Q-01 10 48428973 48428973 C A GDF10 Missense_Mutation p.G305W 0.31 deleterious(0.01) probably_damaging(0.974) TCGA-90-A59Q-01 10 50944075 50944075 G C OGDHL Missense_Mutation p.P968R 0.20 tolerated(0.39) benign(0) TCGA-90-A59Q-01 10 69961606 69961606 C - MYPN Frame_Shift_Del p.P1172Lfs*2 0.16 TCGA-90-A59Q-01 10 71139801 71139801 G C HK1 Missense_Mutation p.R409S 0.28 tolerated(0.11) benign(0.44) TCGA-90-A59Q-01 10 74034935 74034935 G A DDIT4 Missense_Mutation p.E230K 0.22 tolerated(0.05) probably_damaging(0.996) TCGA-90-A59Q-01 10 76868958 76868958 C A DUSP13 5'Flank 0.11 TCGA-90-A59Q-01 10 99201014 99201014 G C EXOSC1 Silent p.V75V 0.21 TCGA-90-A59Q-01 11 120980089 120980089 A C TECTA Missense_Mutation p.K123T 0.27 tolerated(0.27) benign(0) TCGA-90-A59Q-01 11 124745998 124745998 G C ROBO3 Missense_Mutation p.S857T 0.31 deleterious(0) probably_damaging(0.998) TCGA-90-A59Q-01 11 128840670 128840670 G A ARHGAP32 Missense_Mutation p.H1466Y 0.31 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-90-A59Q-01 11 14989340 14989340 G T CALCA 3'Flank 0.21 TCGA-90-A59Q-01 11 20622712 20622712 C G SLC6A5 Missense_Mutation p.A14G 0.33 deleterious_low_confidence(0.04) benign(0.016) TCGA-90-A59Q-01 11 32956475 32956492 GACCTGCCCAAGGCAAAC - QSER1 In_Frame_Del p.R1095_R1101delinsS 0.21 TCGA-90-A59Q-01 11 36595167 36595167 G T RAG1 Missense_Mutation p.A105S 0.22 tolerated_low_confidence(0.54) probably_damaging(0.956) TCGA-90-A59Q-01 11 40136768 40136768 G T LRRC4C Missense_Mutation p.P359T 0.07 tolerated(0.11) benign(0.165) TCGA-90-A59Q-01 11 48238944 48238944 G T OR4B1 Missense_Mutation p.V195F 0.24 deleterious(0.03) benign(0.062) TCGA-90-A59Q-01 11 55798677 55798677 G A OR5AS1 Silent p.Q261Q 0.23 TCGA-90-A59Q-01 11 63885054 63885054 C T FLRT1 Silent p.L439L 0.25 TCGA-90-A59Q-01 11 67379626 67379626 G T NDUFV1 Missense_Mutation p.V400L 0.27 deleterious_low_confidence(0.03) benign(0.434) TCGA-90-A59Q-01 11 68115477 68115477 A - LRP5 Frame_Shift_Del p.E85Gfs*8 0.27 TCGA-90-A59Q-01 11 92564919 92564919 G T FAT3 Missense_Mutation p.V3205L 0.29 possibly_damaging(0.665) TCGA-90-A59Q-01 12 100453104 100453104 T G UHRF1BP1L Missense_Mutation p.N651H 0.19 tolerated(0.06) benign(0.009) TCGA-90-A59Q-01 12 104031012 104031012 A T STAB2 Missense_Mutation p.D236V 0.10 tolerated(0.08) benign(0.015) TCGA-90-A59Q-01 12 108012042 108012042 C A BTBD11 Missense_Mutation p.P780H 0.24 tolerated(0.08) possibly_damaging(0.758) TCGA-90-A59Q-01 12 117465839 117465839 G T FBXW8 Silent p.R553R 0.17 TCGA-90-A59Q-01 12 120588997 120588997 C A GCN1L1 Missense_Mutation p.A1421S 0.21 benign(0.021) TCGA-90-A59Q-01 12 132195838 132195838 G T SFSWAP Missense_Mutation p.G22W 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-90-A59Q-01 12 132472292 132472292 G T EP400 Missense_Mutation p.G756C 0.13 unknown(0) TCGA-90-A59Q-01 12 2719758 2719758 C A CACNA1C Missense_Mutation p.P1224T 0.20 deleterious(0) probably_damaging(0.988) TCGA-90-A59Q-01 12 43777694 43777694 A C ADAMTS20 Missense_Mutation p.C1513W 0.21 deleterious(0) probably_damaging(0.999) TCGA-90-A59Q-01 12 47182313 47182313 G T SLC38A4 Missense_Mutation p.H70N 0.15 tolerated(0.16) benign(0.084) TCGA-90-A59Q-01 12 56435895 56435895 C A RPS26 5'UTR 0.16 TCGA-90-A59Q-01 12 56504195 56504195 A G PA2G4 Silent p.E214E 0.27 TCGA-90-A59Q-01 12 57110236 57110236 G A NACA Intron 0.21 TCGA-90-A59Q-01 12 57140771 57140771 C T PRIM1 Missense_Mutation p.E103K 0.16 deleterious(0) probably_damaging(0.949) TCGA-90-A59Q-01 12 57861923 57861923 C A GLI1 Silent p.S408S 0.12 TCGA-90-A59Q-01 12 81111338 81111338 G C MYF5 Missense_Mutation p.G166R 0.19 deleterious(0.02) probably_damaging(0.954) TCGA-90-A59Q-01 12 97043748 97043748 A T C12orf55 Silent p.S1590S 0.20 TCGA-90-A59Q-01 13 102367912 102367912 G T ITGBL1 Splice_Site p.X465_splice 0.17 TCGA-90-A59Q-01 13 108862190 108862190 C A LIG4 Missense_Mutation p.R476L 0.16 deleterious(0) possibly_damaging(0.84) TCGA-90-A59Q-01 13 113176660 113176661 AA - TUBGCP3 Frame_Shift_Del p.F573Yfs*23 0.32 TCGA-90-A59Q-01 13 21562400 21562400 C A LATS2 Nonsense_Mutation p.G507* 0.18 TCGA-90-A59Q-01 13 43788169 43788169 T A ENOX1 Missense_Mutation p.K630I 0.19 deleterious(0) probably_damaging(0.997) TCGA-90-A59Q-01 14 100809637 100809637 C T WARS Missense_Mutation p.C305Y 0.14 deleterious(0) possibly_damaging(0.89) TCGA-90-A59Q-01 14 101200651 101200651 C T DLK1 Silent p.G190G 0.17 TCGA-90-A59Q-01 14 103410637 103410637 C A CDC42BPB Silent p.T1333T 0.34 TCGA-90-A59Q-01 14 20296526 20296526 G A OR4N2 Missense_Mutation p.A307T 0.10 tolerated(0.47) benign(0.073) TCGA-90-A59Q-01 14 20404622 20404623 - T OR4K1 Frame_Shift_Ins p.V267Cfs*26 0.10 TCGA-90-A59Q-01 14 21928538 21928538 G T RAB2B 3'UTR 0.15 TCGA-90-A59Q-01 14 23896937 23896937 T C MYH7 Missense_Mutation p.Y582C 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-90-A59Q-01 14 34269400 34269400 C A NPAS3 Silent p.G629G 0.33 TCGA-90-A59Q-01 14 34269402 34269402 T G NPAS3 Missense_Mutation p.L630R 0.30 deleterious_low_confidence(0.01) benign(0.403) TCGA-90-A59Q-01 14 72138127 72138127 A T SIPA1L1 Silent p.P849P 0.23 TCGA-90-A59Q-01 14 94158104 94158104 C G UNC79 Missense_Mutation p.L2290V 0.22 deleterious(0) probably_damaging(0.995) TCGA-90-A59Q-01 15 25226985 25226985 C A SNRPN 3'Flank 0.21 TCGA-90-A59Q-01 15 28235784 28235784 T A OCA2 Nonsense_Mutation p.R352* 0.20 TCGA-90-A59Q-01 15 42644248 42644248 G T GANC Missense_Mutation p.A886S 0.20 benign(0.017) TCGA-90-A59Q-01 15 45965844 45965844 G T SQRDL Missense_Mutation p.G167W 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-90-A59Q-01 15 59911709 59911709 A T GCNT3 Missense_Mutation p.L424F 0.27 deleterious(0) probably_damaging(0.98) TCGA-90-A59Q-01 15 67938749 67938749 A T MAP2K5 Silent p.G226G 0.17 TCGA-90-A59Q-01 15 79088976 79088976 C A ADAMTS7 Nonsense_Mutation p.G259* 0.14 TCGA-90-A59Q-01 15 83926533 83926533 T - BNC1 Frame_Shift_Del p.G883Afs*29 0.16 TCGA-90-A59Q-01 15 86814896 86814896 A T AGBL1 Missense_Mutation p.K632N 0.16 deleterious(0.04) benign(0.101) TCGA-90-A59Q-01 16 11001643 11001643 C A CIITA Missense_Mutation p.P765H 0.22 deleterious(0.01) probably_damaging(0.971) TCGA-90-A59Q-01 16 18844329 18844329 C A SMG1 Missense_Mutation p.A2909S 0.19 tolerated(0.23) probably_damaging(0.935) TCGA-90-A59Q-01 16 20974688 20974688 G A DNAH3 Silent p.F3506F 0.21 TCGA-90-A59Q-01 16 24573007 24573007 G T RBBP6 Missense_Mutation p.A308S 0.22 tolerated_low_confidence(0.1) benign(0.103) TCGA-90-A59Q-01 16 4702686 4702686 G A MGRN1 Missense_Mutation p.D102N 0.21 tolerated(0.08) possibly_damaging(0.875) TCGA-90-A59Q-01 16 57597808 57597808 G T GPR114 Nonsense_Mutation p.E116* 0.21 TCGA-90-A59Q-01 16 67864419 67864419 G A CENPT Nonsense_Mutation p.Q246* 0.19 TCGA-90-A59Q-01 16 87637019 87637019 C T JPH3 Silent p.H89H 0.47 TCGA-90-A59Q-01 16 87678561 87678561 C A JPH3 Silent p.R360R 0.14 TCGA-90-A59Q-01 16 9943641 9943641 C T GRIN2A Missense_Mutation p.V434M 0.18 deleterious(0) probably_damaging(1) TCGA-90-A59Q-01 17 11896081 11896081 C G ZNF18 Missense_Mutation p.Q22H 0.22 tolerated(0.54) benign(0.128) TCGA-90-A59Q-01 17 19317459 19317459 G A RNF112 Splice_Site p.X292_splice 0.14 TCGA-90-A59Q-01 17 26087189 26087189 C A NOS2 Missense_Mutation p.R1009L 0.11 tolerated(0.09) benign(0.347) TCGA-90-A59Q-01 17 36002149 36002149 C G DDX52 Silent p.T92T 0.18 TCGA-90-A59Q-01 17 39394410 39394410 C G KRTAP9-8 Missense_Mutation p.S36C 0.16 deleterious(0) unknown(0) TCGA-90-A59Q-01 17 42478457 42478457 C A GPATCH8 Missense_Mutation p.D330Y 0.20 deleterious(0) benign(0.242) TCGA-90-A59Q-01 17 46675535 46675535 C A HOXB6 5'UTR 0.14 TCGA-90-A59Q-01 17 46847223 46847223 G T TTLL6 Missense_Mutation p.N759K 0.25 tolerated(0.15) benign(0.002) TCGA-90-A59Q-01 17 47301984 47301984 C A PHOSPHO1 Missense_Mutation p.R168L 0.38 tolerated(0.46) benign(0.025) TCGA-90-A59Q-01 17 50212376 50212376 C A CA10 Intron 0.24 TCGA-90-A59Q-01 17 51902332 51902332 G T KIF2B Missense_Mutation p.E646D 0.14 tolerated(1) benign(0.015) TCGA-90-A59Q-01 17 61613164 61613164 G A KCNH6 Silent p.A412A 0.20 TCGA-90-A59Q-01 17 61623096 61623096 G A KCNH6 Missense_Mutation p.G940R 0.19 tolerated_low_confidence(0.17) benign(0.008) TCGA-90-A59Q-01 17 71165965 71165965 C A SSTR2 Silent p.V169V 0.32 TCGA-90-A59Q-01 18 13884936 13884936 C G MC2R Silent p.V194V 0.15 TCGA-90-A59Q-01 18 14104891 14104891 C T ZNF519 3'UTR 0.13 TCGA-90-A59Q-01 18 19995735 19995735 C A CTAGE1 Silent p.P680P 0.25 TCGA-90-A59Q-01 18 47108109 47108109 C A LIPG Intron 0.21 TCGA-90-A59Q-01 18 6311627 6311627 C A L3MBTL4 5'UTR 0.21 TCGA-90-A59Q-01 18 74659542 74659542 G T ZNF236 Silent p.P1614P 0.18 TCGA-90-A59Q-01 19 1219381 1219381 G T STK11 Nonsense_Mutation p.E145* 0.30 TCGA-90-A59Q-01 19 12256748 12256748 T A ZNF625 Missense_Mutation p.K161N 0.20 deleterious(0.04) probably_damaging(0.933) TCGA-90-A59Q-01 19 14991751 14991751 C A OR7A17 Silent p.R139R 0.19 TCGA-90-A59Q-01 19 14991752 14991752 C T OR7A17 Missense_Mutation p.R139Q 0.19 tolerated_low_confidence(0.6) benign(0.007) TCGA-90-A59Q-01 19 15580653 15580653 G T PGLYRP2 Silent p.G477G 0.13 TCGA-90-A59Q-01 19 17949120 17949120 C A JAK3 Missense_Mutation p.Q507H 0.21 tolerated(0.24) possibly_damaging(0.45) TCGA-90-A59Q-01 19 18507309 18507309 G T LRRC25 Silent p.V155V 0.14 TCGA-90-A59Q-01 19 21607834 21607834 G T ZNF493 3'UTR 0.29 TCGA-90-A59Q-01 19 30935899 30935899 C - ZNF536 Frame_Shift_Del p.H478Tfs*21 0.17 TCGA-90-A59Q-01 19 34003637 34003637 C G PEPD Silent p.A21A 0.20 TCGA-90-A59Q-01 19 37367932 37367932 G T ZNF345 Missense_Mutation p.C67F 0.11 deleterious(0) possibly_damaging(0.881) TCGA-90-A59Q-01 19 38160039 38160039 C A ZNF781 3'UTR 0.17 TCGA-90-A59Q-01 19 38229629 38229629 C A ZNF573 Nonsense_Mutation p.G588* 0.19 TCGA-90-A59Q-01 19 39018943 39018943 C A RYR1 Intron 0.30 TCGA-90-A59Q-01 19 40395852 40395852 C A FCGBP Missense_Mutation p.Q2515H 0.19 benign(0.045) TCGA-90-A59Q-01 19 40718731 40718731 T A MAP3K10 Silent p.G524G 0.24 TCGA-90-A59Q-01 19 40929408 40929408 T C SERTAD1 Missense_Mutation p.K16E 0.15 tolerated(1) benign(0) TCGA-90-A59Q-01 19 41863924 41863924 G A B9D2 Missense_Mutation p.A31V 0.17 deleterious(0.03) benign(0.108) TCGA-90-A59Q-01 19 43519432 43519432 G T PSG11 Missense_Mutation p.P267Q 0.15 deleterious(0) benign(0.049) TCGA-90-A59Q-01 19 43579757 43579757 C A PSG2 Missense_Mutation p.S153I 0.18 tolerated(0.11) benign(0.013) TCGA-90-A59Q-01 19 44570329 44570329 C A ZNF223 Missense_Mutation p.D116E 0.27 tolerated(0.06) benign(0.297) TCGA-90-A59Q-01 19 44681763 44681763 A T ZNF226 Missense_Mutation p.Y783F 0.14 tolerated(0.08) possibly_damaging(0.449) TCGA-90-A59Q-01 19 4682747 4682747 G A DPP9 Missense_Mutation p.A812V 0.44 tolerated(0.22) possibly_damaging(0.701) TCGA-90-A59Q-01 19 46916002 46916002 G A CCDC8 Silent p.G22G 0.19 TCGA-90-A59Q-01 19 48389515 48389515 G A SULT2A1 5'UTR 0.19 TCGA-90-A59Q-01 19 51022449 51022449 G T LRRC4B Missense_Mutation p.P174H 0.13 deleterious(0.01) probably_damaging(0.975) TCGA-90-A59Q-01 19 51135902 51135902 C A SYT3 Silent p.G105G 0.12 TCGA-90-A59Q-01 19 51329193 51329193 C A KLK15 Silent p.G210G 0.14 TCGA-90-A59Q-01 19 52328070 52328070 G T FPR3 3'UTR 0.17 TCGA-90-A59Q-01 19 52941383 52941383 A T ZNF534 Missense_Mutation p.S237C 0.21 tolerated(0.08) benign(0.323) TCGA-90-A59Q-01 19 53058633 53058633 A G ZNF808 Missense_Mutation p.N822D 0.15 tolerated(0.29) probably_damaging(0.994) TCGA-90-A59Q-01 19 54823806 54823806 C A LILRA5 Splice_Site p.X30_splice 0.22 TCGA-90-A59Q-01 19 55399609 55399609 G C FCAR Missense_Mutation p.R199S 0.11 tolerated(0.87) benign(0.002) TCGA-90-A59Q-01 19 56466062 56466062 G T NLRP8 Missense_Mutation p.G213V 0.18 deleterious(0) probably_damaging(0.995) TCGA-90-A59Q-01 19 57672070 57672070 C A DUXA Missense_Mutation p.G41C 0.26 deleterious(0) probably_damaging(0.99) TCGA-90-A59Q-01 19 6897517 6897517 G C EMR1 Missense_Mutation p.S158T 0.31 tolerated(0.65) benign(0.034) TCGA-90-A59Q-01 1 108700191 108700191 C T SLC25A24 Missense_Mutation p.E188K 0.26 deleterious(0.01) possibly_damaging(0.84) TCGA-90-A59Q-01 1 12942063 12942063 C G PRAMEF4 Missense_Mutation p.D163H 0.17 deleterious(0) probably_damaging(0.994) TCGA-90-A59Q-01 1 147597193 147597193 A G NBPF24 Silent p.A89A 0.11 TCGA-90-A59Q-01 1 152057918 152057918 T C TCHHL1 Missense_Mutation p.E747G 0.10 deleterious(0.05) possibly_damaging(0.722) TCGA-90-A59Q-01 1 152573215 152573215 G T LCE3C Missense_Mutation p.C3F 0.10 deleterious_low_confidence(0) unknown(0) TCGA-90-A59Q-01 1 153270437 153270437 G A PGLYRP3 Missense_Mutation p.H341Y 0.40 tolerated(0.06) benign(0.02) TCGA-90-A59Q-01 1 156212942 156212942 G T BGLAP Missense_Mutation p.G98C 0.15 deleterious(0) probably_damaging(0.997) TCGA-90-A59Q-01 1 156640975 156640975 G T NES Missense_Mutation p.A1002D 0.10 deleterious(0) possibly_damaging(0.793) TCGA-90-A59Q-01 1 157665857 157665857 T C FCRL3 Missense_Mutation p.S369G 0.12 deleterious(0) probably_damaging(0.999) TCGA-90-A59Q-01 1 158581020 158581020 C A SPTA1 3'UTR 0.08 TCGA-90-A59Q-01 1 169510982 169510982 C A F5 Missense_Mutation p.G1116C 0.20 deleterious(0) possibly_damaging(0.641) TCGA-90-A59Q-01 1 175372752 175372752 C A TNR Missense_Mutation p.G167V 0.08 deleterious(0) probably_damaging(0.963) TCGA-90-A59Q-01 1 178423700 178423700 G A RASAL2 Missense_Mutation p.G710S 0.08 tolerated(0.35) probably_damaging(1) TCGA-90-A59Q-01 1 182827347 182827347 G T DHX9 Missense_Mutation p.G261V 0.09 deleterious(0) probably_damaging(0.998) TCGA-90-A59Q-01 1 183111934 183111934 G T LAMC1 3'UTR 0.31 TCGA-90-A59Q-01 1 196646606 196646606 T C CFH Missense_Mutation p.V143A 0.30 deleterious(0.04) probably_damaging(0.977) TCGA-90-A59Q-01 1 197073824 197073824 C T ASPM Silent p.K1519K 0.40 TCGA-90-A59Q-01 1 197886940 197886940 C T LHX9 5'UTR 0.11 TCGA-90-A59Q-01 1 201980384 201980385 - GT ELF3 Frame_Shift_Ins p.L42Yfs*2 0.22 TCGA-90-A59Q-01 1 202724495 202724495 C A KDM5B Missense_Mutation p.G481V 0.37 deleterious(0) probably_damaging(0.967) TCGA-90-A59Q-01 1 203465295 203465295 C A OPTC Missense_Mutation p.D54E 0.30 tolerated(0.19) benign(0.022) TCGA-90-A59Q-01 1 208061019 208061019 C G CD34 3'UTR 0.11 TCGA-90-A59Q-01 1 211487183 211487183 A T RCOR3 3'UTR 0.36 TCGA-90-A59Q-01 1 22172684 22172684 C G HSPG2 Missense_Mutation p.R2794P 0.09 possibly_damaging(0.889) TCGA-90-A59Q-01 1 22172687 22172687 C A HSPG2 Missense_Mutation p.C2793F 0.10 probably_damaging(1) TCGA-90-A59Q-01 1 22310748 22310748 C A CELA3B Missense_Mutation p.S189Y 0.20 deleterious(0) probably_damaging(0.976) TCGA-90-A59Q-01 1 229730352 229730352 C T TAF5L Missense_Mutation p.E488K 0.38 deleterious(0.05) probably_damaging(0.919) TCGA-90-A59Q-01 1 229790110 229790110 C - URB2 Frame_Shift_Del p.Q1452Sfs*9 0.12 TCGA-90-A59Q-01 1 231374760 231374760 C A C1orf131 Missense_Mutation p.R98L 0.11 tolerated(1) benign(0) TCGA-90-A59Q-01 1 232162238 232162238 C A DISC1 Missense_Mutation p.L789I 0.12 deleterious(0.05) probably_damaging(0.996) TCGA-90-A59Q-01 1 237167462 237167462 A T MT1HL1 3'UTR 0.19 TCGA-90-A59Q-01 1 237777571 237777571 G A RYR2 Missense_Mutation p.A1715T 0.30 benign(0.004) TCGA-90-A59Q-01 1 245530406 245530406 G T KIF26B Missense_Mutation p.A246S 0.24 tolerated(0.27) unknown(0) TCGA-90-A59Q-01 1 247463771 247463772 - G ZNF496 3'UTR 0.19 TCGA-90-A59Q-01 1 248402576 248402576 G T OR2M4 Missense_Mutation p.A116S 0.09 deleterious(0.03) possibly_damaging(0.899) TCGA-90-A59Q-01 1 248637358 248637358 C A OR2T3 Missense_Mutation p.A236D 0.33 deleterious(0.01) benign(0.343) TCGA-90-A59Q-01 1 33411200 33411200 G A RNF19B Silent p.T393T 0.10 TCGA-90-A59Q-01 1 42049806 42049806 G A HIVEP3 Silent p.P221P 0.30 TCGA-90-A59Q-01 1 55457721 55457721 C T TMEM61 Missense_Mutation p.P193L 0.27 tolerated_low_confidence(0.06) benign(0.002) TCGA-90-A59Q-01 1 55563680 55563680 T A USP24 Missense_Mutation p.Q1844L 0.15 deleterious(0) probably_damaging(0.993) TCGA-90-A59Q-01 1 60299179 60299179 G T HOOK1 Missense_Mutation p.G126C 0.25 deleterious(0.01) probably_damaging(1) TCGA-90-A59Q-01 1 6100614 6100614 A T AL035406.1 3'Flank 0.23 TCGA-90-A59Q-01 1 6203880 6203880 C A CHD5 Intron 0.13 TCGA-90-A59Q-01 1 62740132 62740132 C G KANK4 Missense_Mutation p.S215T 0.12 tolerated(0.16) possibly_damaging(0.731) TCGA-90-A59Q-01 1 74506982 74506982 G C LRRIQ3 Missense_Mutation p.L545V 0.11 tolerated(0.13) benign(0.173) TCGA-90-A59Q-01 1 74506983 74506983 G C LRRIQ3 Silent p.V544V 0.11 TCGA-90-A59Q-01 20 10385982 10385982 C A MKKS Missense_Mutation p.L542F 0.28 tolerated(1) benign(0.002) TCGA-90-A59Q-01 20 1546849 1546849 C T SIRPB1 Silent p.L383L 0.12 TCGA-90-A59Q-01 20 30388960 30388960 T G TPX2 3'UTR 0.24 TCGA-90-A59Q-01 20 3675079 3675079 C A SIGLEC1 Silent p.L1015L 0.26 TCGA-90-A59Q-01 20 60891984 60891984 T G LAMA5 Missense_Mutation p.E2536A 0.24 benign(0) TCGA-90-A59Q-01 21 19666639 19666639 C A TMPRSS15 Missense_Mutation p.A812S 0.13 deleterious(0) probably_damaging(0.979) TCGA-90-A59Q-01 21 31802817 31802817 G C KRTAP13-4 Missense_Mutation p.C75S 0.23 tolerated(1) benign(0) TCGA-90-A59Q-01 21 32410617 32410617 C A KRTAP19-8 Missense_Mutation p.C49F 0.17 tolerated_low_confidence(0.68) unknown(0) TCGA-90-A59Q-01 21 32554868 32554868 C G TIAM1 Silent p.S919S 0.13 TCGA-90-A59Q-01 21 39492444 39492444 G T DSCR4 Missense_Mutation p.P63T 0.10 possibly_damaging(0.803) TCGA-90-A59Q-01 21 46066775 46066775 C G KRTAP10-11 Missense_Mutation p.P134A 0.10 deleterious(0) unknown(0) TCGA-90-A59Q-01 21 46687263 46687263 C G POFUT2 Intron 0.32 TCGA-90-A59Q-01 21 46888391 46888391 G T COL18A1 Silent p.S294S 0.21 TCGA-90-A59Q-01 22 17690455 17690455 A T CECR1 Nonsense_Mutation p.L38* 0.21 TCGA-90-A59Q-01 22 23135411 23135411 G T IGLV2-11 Silent p.T91T 0.25 TCGA-90-A59Q-01 22 23742514 23742514 G A ZDHHC8P1 RNA 0.29 TCGA-90-A59Q-01 22 29752447 29752447 G C AP1B1 Missense_Mutation p.N228K 0.25 tolerated(0.44) benign(0.021) TCGA-90-A59Q-01 22 44277507 44277507 T C PNPLA5 Missense_Mutation p.Q377R 0.29 tolerated(0.16) benign(0.02) TCGA-90-A59Q-01 2 114004404 114004404 G - PAX8 Frame_Shift_Del p.Q40Rfs*3 0.17 TCGA-90-A59Q-01 2 131520291 131520291 G T AMER3 Missense_Mutation p.D216Y 0.23 deleterious(0) probably_damaging(1) TCGA-90-A59Q-01 2 131688583 131688583 A T ARHGEF4 Missense_Mutation p.K18M 0.16 deleterious_low_confidence(0) possibly_damaging(0.533) TCGA-90-A59Q-01 2 141459370 141459370 G T LRP1B Missense_Mutation p.A2116D 0.10 possibly_damaging(0.665) TCGA-90-A59Q-01 2 1459953 1459953 G T TPO Missense_Mutation p.D240Y 0.24 deleterious(0) probably_damaging(1) TCGA-90-A59Q-01 2 152319866 152319866 G T RIF1 Nonsense_Mutation p.E1278* 0.15 TCGA-90-A59Q-01 2 152363453 152363453 A T NEB Silent p.R7842R 0.10 TCGA-90-A59Q-01 2 166866318 166866318 C A SCN1A Missense_Mutation p.G1305C 0.22 deleterious(0) probably_damaging(0.997) TCGA-90-A59Q-01 2 179605726 179605726 G A TTN Silent p.T4078T 0.29 TCGA-90-A59Q-01 2 186672456 186672456 T A FSIP2 Missense_Mutation p.H6230Q 0.20 benign(0.089) TCGA-90-A59Q-01 2 186678714 186678714 C A FSIP2 Missense_Mutation p.P6846Q 0.17 benign(0.037) TCGA-90-A59Q-01 2 189599573 189599573 A T DIRC1 Silent p.P25P 0.18 TCGA-90-A59Q-01 2 190718761 190718761 G A PMS1 Missense_Mutation p.D307N 0.11 deleterious(0) probably_damaging(1) TCGA-90-A59Q-01 2 202626202 202626202 C T ALS2 Nonsense_Mutation p.W172* 0.22 TCGA-90-A59Q-01 2 211467004 211467004 G T CPS1 Missense_Mutation p.G602C 0.17 deleterious(0.01) benign(0.251) TCGA-90-A59Q-01 2 219562646 219562646 G A STK36 Silent p.A993A 0.24 TCGA-90-A59Q-01 2 219924920 219924920 G T IHH Silent p.I90I 0.13 TCGA-90-A59Q-01 2 220503523 220503523 G T SLC4A3 Missense_Mutation p.M1012I 0.17 deleterious(0) probably_damaging(0.993) TCGA-90-A59Q-01 2 230910469 230910469 G T SLC16A14 Missense_Mutation p.P458H 0.17 deleterious(0) probably_damaging(1) TCGA-90-A59Q-01 2 234749992 234749992 C T HJURP Silent p.Q478Q 0.17 TCGA-90-A59Q-01 2 242758288 242758288 C A NEU4 Missense_Mutation p.L470M 0.22 deleterious(0.04) probably_damaging(1) TCGA-90-A59Q-01 2 29397271 29397271 T G CLIP4 Missense_Mutation p.S586A 0.25 tolerated(0.58) benign(0.008) TCGA-90-A59Q-01 2 31573001 31573001 G A XDH Missense_Mutation p.P907L 0.22 deleterious(0) possibly_damaging(0.861) TCGA-90-A59Q-01 2 40656273 40656273 G A SLC8A1 Missense_Mutation p.A383V 0.20 tolerated(0.2) benign(0.248) TCGA-90-A59Q-01 2 48681848 48681848 G T PPP1R21 Missense_Mutation p.A81S 0.20 tolerated(0.74) benign(0.024) TCGA-90-A59Q-01 2 48873612 48873612 G T STON1-GTF2A1L Missense_Mutation p.V841L 0.15 deleterious(0.02) probably_damaging(0.997) TCGA-90-A59Q-01 2 71591235 71591235 A C ZNF638 Silent p.R524R 0.25 TCGA-90-A59Q-01 2 99725942 99725942 G T TSGA10 5'UTR 0.27 TCGA-90-A59Q-01 3 108278875 108278875 C A KIAA1524 Missense_Mutation p.V610L 0.21 tolerated(1) benign(0.003) TCGA-90-A59Q-01 3 134339620 134339620 G T KY Missense_Mutation p.A188D 0.26 deleterious(0) probably_damaging(0.936) TCGA-90-A59Q-01 3 147108912 147108912 G T ZIC4 Silent p.G320G 0.15 TCGA-90-A59Q-01 3 148459978 148459978 C - AGTR1 3'UTR 0.12 TCGA-90-A59Q-01 3 154055790 154055790 C A GPR149 Missense_Mutation p.D632Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-90-A59Q-01 3 184042835 184042835 A G EIF4G1 Missense_Mutation p.E937G 0.23 deleterious(0) probably_damaging(0.996) TCGA-90-A59Q-01 3 33425516 33425516 G A FBXL2 Silent p.G329G 0.11 TCGA-90-A59Q-01 3 38647568 38647568 C A SCN5A Silent p.L404L 0.21 TCGA-90-A59Q-01 3 39306998 39306998 C A CX3CR1 Nonsense_Mutation p.G367* 0.22 TCGA-90-A59Q-01 3 49168533 49168533 C A LAMB2 Missense_Mutation p.L255F 0.21 deleterious(0) probably_damaging(1) TCGA-90-A59Q-01 3 52473957 52473957 T A SEMA3G Missense_Mutation p.Q434L 0.20 deleterious(0.02) benign(0.403) TCGA-90-A59Q-01 3 7620978 7620978 C G GRM7 Nonsense_Mutation p.Y795* 0.33 TCGA-90-A59Q-01 3 77607137 77607137 C G ROBO2 Missense_Mutation p.A441G 0.19 tolerated(0.08) benign(0.006) TCGA-90-A59Q-01 3 97454945 97454945 G A EPHA6 Silent p.L1037L 0.19 TCGA-90-A59Q-01 3 97983829 97983829 A T OR5H6 Missense_Mutation p.Y234F 0.30 deleterious(0) probably_damaging(1) TCGA-90-A59Q-01 3 98216544 98216544 C A OR5K2 Missense_Mutation p.T7N 0.12 deleterious(0) possibly_damaging(0.796) TCGA-90-A59Q-01 3 9908870 9908870 G A CIDEC Missense_Mutation p.P232L 0.26 tolerated(0.09) benign(0.003) TCGA-90-A59Q-01 4 100125260 100125260 G C ADH6 3'UTR 0.38 TCGA-90-A59Q-01 4 104000767 104000767 C A BDH2 3'UTR 0.24 TCGA-90-A59Q-01 4 123171705 123171705 G T KIAA1109 Nonsense_Mutation p.G1967* 0.17 TCGA-90-A59Q-01 4 134071927 134071927 G C PCDH10 Missense_Mutation p.G211A 0.13 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-90-A59Q-01 4 13601444 13601444 G A BOD1L1 Silent p.N2360N 0.25 TCGA-90-A59Q-01 4 145628316 145628318 GAG AA HHIP Frame_Shift_Del p.G354Efs*20 0.19 TCGA-90-A59Q-01 4 17910877 17910877 T G LCORL Silent p.S174S 0.08 TCGA-90-A59Q-01 4 189025998 189025998 A G TRIML2 Missense_Mutation p.M43T 0.19 tolerated(0.1) benign(0.018) TCGA-90-A59Q-01 4 47560988 47560988 A T ATP10D Missense_Mutation p.Q828L 0.16 deleterious(0) possibly_damaging(0.861) TCGA-90-A59Q-01 4 6086623 6086623 G A JAKMIP1 Missense_Mutation p.R302W 0.14 tolerated(0.07) probably_damaging(0.993) TCGA-90-A59Q-01 4 66217115 66217115 T A EPHA5 Missense_Mutation p.T834S 0.14 tolerated(0.07) possibly_damaging(0.88) TCGA-90-A59Q-01 4 70156327 70156327 G T UGT2B28 Missense_Mutation p.A370S 0.11 deleterious(0.03) probably_damaging(0.986) TCGA-90-A59Q-01 4 70713498 70713498 G C SULT1E1 Missense_Mutation p.S170C 0.21 deleterious(0.01) probably_damaging(1) TCGA-90-A59Q-01 4 71255436 71255436 T A SMR3B Silent p.P37P 0.11 TCGA-90-A59Q-01 4 71275284 71275284 A T PROL1 Missense_Mutation p.Q80L 0.08 tolerated_low_confidence(0.15) benign(0.145) TCGA-90-A59Q-01 4 71509818 71509818 A G ENAM Missense_Mutation p.Y892C 0.19 deleterious(0) probably_damaging(0.992) TCGA-90-A59Q-01 4 74364894 74364894 C A AFM Silent p.G451G 0.12 TCGA-90-A59Q-01 4 96469921 96469921 G T UNC5C Missense_Mutation p.L30M 0.18 tolerated(0.09) benign(0.006) TCGA-90-A59Q-01 5 1217016 1217016 C A SLC6A19 Missense_Mutation p.Q377K 0.29 tolerated(0.55) benign(0.005) TCGA-90-A59Q-01 5 127681161 127681161 G T FBN2 Silent p.T1035T 0.28 TCGA-90-A59Q-01 5 149441159 149441159 C A CSF1R Splice_Site p.X585_splice 0.33 TCGA-90-A59Q-01 5 156936308 156936308 C A ADAM19 Splice_Site p.X302_splice 0.14 TCGA-90-A59Q-01 5 160047706 160047706 G A ATP10B Silent p.G688G 0.24 TCGA-90-A59Q-01 5 161580120 161580120 C A GABRG2 Missense_Mutation p.P432T 0.21 deleterious(0.04) possibly_damaging(0.852) TCGA-90-A59Q-01 5 169025986 169025986 G A SPDL1 Missense_Mutation p.E383K 0.17 deleterious(0.04) possibly_damaging(0.574) TCGA-90-A59Q-01 5 180048549 180048549 C T FLT4 Silent p.S671S 0.20 TCGA-90-A59Q-01 5 180335729 180335729 C T BTNL8 Missense_Mutation p.H65Y 0.17 tolerated(0.1) benign(0.388) TCGA-90-A59Q-01 5 45695836 45695836 C A HCN1 Silent p.V120V 0.18 TCGA-90-A59Q-01 6 100382376 100382376 G A MCHR2 Missense_Mutation p.T202M 0.12 deleterious(0.04) benign(0.392) TCGA-90-A59Q-01 6 108985211 108985211 A G FOXO3 Missense_Mutation p.D392G 0.19 deleterious(0.01) possibly_damaging(0.724) TCGA-90-A59Q-01 6 112440458 112440458 G T LAMA4 Silent p.V1574V 0.20 TCGA-90-A59Q-01 6 119295734 119295734 T C FAM184A Missense_Mutation p.H925R 0.21 tolerated(0.07) benign(0.041) TCGA-90-A59Q-01 6 134491444 134491444 C A SGK1 Missense_Mutation p.G515C 0.19 deleterious(0) probably_damaging(0.999) TCGA-90-A59Q-01 6 146720226 146720226 G C GRM1 Missense_Mutation p.R684P 0.20 deleterious(0) probably_damaging(0.999) TCGA-90-A59Q-01 6 147632664 147632664 G T STXBP5 Splice_Site p.X382_splice 0.16 TCGA-90-A59Q-01 6 152560799 152560799 T A SYNE1 Missense_Mutation p.T6646S 0.25 benign(0.013) TCGA-90-A59Q-01 6 153078250 153078250 G T VIP Missense_Mutation p.D163Y 0.31 deleterious(0.01) possibly_damaging(0.872) TCGA-90-A59Q-01 6 169628338 169628338 G C THBS2 Missense_Mutation p.D766E 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-90-A59Q-01 6 36926965 36926965 G A PI16 Silent p.R72R 0.21 TCGA-90-A59Q-01 6 36990074 36990074 C A FGD2 Silent p.T462T 0.21 TCGA-90-A59Q-01 6 37141762 37141762 A T PIM1 Silent p.P279P 0.26 TCGA-90-A59Q-01 6 46976792 46976792 G A GPR110 Silent p.L793L 0.26 TCGA-90-A59Q-01 6 47649522 47649522 C A GPR111 Nonsense_Mutation p.C409* 0.24 TCGA-90-A59Q-01 6 54804555 54804555 A T FAM83B Silent p.T262T 0.17 TCGA-90-A59Q-01 6 64413510 64413510 A T PHF3 Missense_Mutation p.T1106S 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-90-A59Q-01 6 78172692 78172692 G A HTR1B Silent p.I143I 0.24 TCGA-90-A59Q-01 6 93956511 93956511 T G EPHA7 Silent p.R909R 0.16 TCGA-90-A59Q-01 7 106508577 106508577 C A PIK3CG Missense_Mutation p.R191S 0.23 deleterious(0) probably_damaging(1) TCGA-90-A59Q-01 7 123152261 123152261 T C IQUB Missense_Mutation p.H45R 0.13 tolerated_low_confidence(0.62) benign(0.001) TCGA-90-A59Q-01 7 128640522 128640522 C A TNPO3 Silent p.L324L 0.18 TCGA-90-A59Q-01 7 139715620 139715620 C A TBXAS1 Missense_Mutation p.P489T 0.20 deleterious(0) probably_damaging(0.999) TCGA-90-A59Q-01 7 141537682 141537682 C T PRSS37 Silent p.L136L 0.12 TCGA-90-A59Q-01 7 142334876 142334876 C G TRBV20-1 Missense_Mutation p.P100A 0.23 tolerated(0.24) benign(0.168) TCGA-90-A59Q-01 7 1516224 1516224 C A INTS1 Silent p.R1711R 0.25 TCGA-90-A59Q-01 7 154862988 154862988 G T HTR5A-AS1 Missense_Mutation p.A9D 0.17 deleterious_low_confidence(0) possibly_damaging(0.82) TCGA-90-A59Q-01 7 154875955 154875955 C G HTR5A Missense_Mutation p.Q278E 0.20 tolerated(0.17) benign(0.411) TCGA-90-A59Q-01 7 18975452 18975452 C A HDAC9 Missense_Mutation p.Q942K 0.13 deleterious(0.01) probably_damaging(0.915) TCGA-90-A59Q-01 7 19184586 19184586 C A FERD3L Nonsense_Mutation p.E134* 0.22 TCGA-90-A59Q-01 7 35284637 35284637 C A TBX20 Missense_Mutation p.G193V 0.13 deleterious(0.01) possibly_damaging(0.858) TCGA-90-A59Q-01 7 48080979 48080979 C A C7orf57 Missense_Mutation p.A35D 0.23 deleterious(0.02) possibly_damaging(0.809) TCGA-90-A59Q-01 7 48080980 48080980 C A C7orf57 Silent p.A35A 0.23 TCGA-90-A59Q-01 7 48273638 48273638 C A ABCA13 Missense_Mutation p.Q263K 0.12 benign(0.001) TCGA-90-A59Q-01 7 57188170 57188170 T A ZNF479 Missense_Mutation p.I318F 0.39 deleterious(0.01) benign(0.05) TCGA-90-A59Q-01 7 96650103 96650103 G A DLX5 Missense_Mutation p.P272L 0.18 deleterious(0.02) benign(0.007) TCGA-90-A59Q-01 7 98445665 98445665 G T TMEM130 3'UTR 0.28 TCGA-90-A59Q-01 8 10467012 10467012 G A RP1L1 Silent p.A1532A 0.17 TCGA-90-A59Q-01 8 119945302 119945302 G T TNFRSF11B Missense_Mutation p.L90M 0.09 tolerated(0.05) possibly_damaging(0.897) TCGA-90-A59Q-01 8 125107220 125107220 G T FER1L6 Missense_Mutation p.V1546F 0.10 deleterious(0) possibly_damaging(0.821) TCGA-90-A59Q-01 8 24813624 24813624 G C CTD-2168K21.2 5'Flank 0.32 TCGA-90-A59Q-01 8 48731963 48731963 C G PRKDC Missense_Mutation p.G3148R 0.12 benign(0.382) TCGA-90-A59Q-01 8 52320773 52320773 C A PXDNL Silent p.S1137S 0.11 TCGA-90-A59Q-01 8 53044669 53044669 C A ST18 Missense_Mutation p.G839C 0.15 deleterious(0) probably_damaging(0.991) TCGA-90-A59Q-01 8 53079511 53079511 G A ST18 Missense_Mutation p.P369S 0.23 deleterious(0) probably_damaging(1) TCGA-90-A59Q-01 8 6385176 6385176 G T ANGPT2 Missense_Mutation p.L156I 0.20 tolerated(0.35) benign(0.255) TCGA-90-A59Q-01 9 125004240 125004240 C G RBM18 Missense_Mutation p.V166L 0.23 tolerated(0.5) benign(0.001) TCGA-90-A59Q-01 9 125154803 125154803 C A PTGS1 Silent p.R594R 0.12 TCGA-90-A59Q-01 9 125154845 125154845 G T PTGS1 3'UTR 0.17 TCGA-90-A59Q-01 9 125377957 125377957 G A OR1Q1 Missense_Mutation p.R314K 0.24 tolerated(0.17) benign(0.002) TCGA-90-A59Q-01 9 125486832 125486832 C A OR1L4 Silent p.L188L 0.26 TCGA-90-A59Q-01 9 138651635 138651635 C T KCNT1 Missense_Mutation p.P322L 0.15 deleterious(0) probably_damaging(0.992) TCGA-90-A59Q-01 9 140081961 140081961 C A ANAPC2 Nonsense_Mutation p.E238* 0.21 TCGA-90-A59Q-01 9 141016222 141016222 T A CACNA1B Missense_Mutation p.L2264Q 0.18 tolerated(0.38) benign(0.064) TCGA-90-A59Q-01 9 17394567 17394567 G T CNTLN Missense_Mutation p.E705D 0.26 deleterious(0.01) possibly_damaging(0.848) TCGA-90-A59Q-01 9 33113413 33113413 C A B4GALT1 3'UTR 0.38 TCGA-90-A59Q-01 9 37745028 37745028 C T FRMPD1 Missense_Mutation p.A1000V 0.22 tolerated_low_confidence(0.24) benign(0.002) TCGA-90-A59Q-01 9 77442766 77442766 C T TRPM6 Missense_Mutation p.G257S 0.29 deleterious(0.02) probably_damaging(0.977) TCGA-90-A59Q-01 9 95152293 95152293 A T OGN Missense_Mutation p.I158K 0.18 deleterious(0) probably_damaging(1) TCGA-90-A59Q-01 X 101139249 101139249 G T ZMAT1 Missense_Mutation p.H384N 0.13 tolerated(0.16) benign(0.02) TCGA-90-A59Q-01 X 107977098 107977098 C A IRS4 Missense_Mutation p.S826I 0.21 deleterious(0) unknown(0) TCGA-90-A59Q-01 X 107977671 107977671 G T IRS4 Missense_Mutation p.P635H 0.21 deleterious_low_confidence(0) unknown(0) TCGA-90-A59Q-01 X 119388888 119388888 C A ZBTB33 Missense_Mutation p.H540N 0.15 deleterious(0) probably_damaging(0.998) TCGA-90-A59Q-01 X 12906512 12906512 C A TLR7 Missense_Mutation p.A962E 0.09 deleterious(0.03) possibly_damaging(0.616) TCGA-90-A59Q-01 X 129201345 129201345 G T ELF4 Missense_Mutation p.P448Q 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-90-A59Q-01 X 129201346 129201346 G T ELF4 Missense_Mutation p.P448T 0.15 deleterious(0) probably_damaging(0.998) TCGA-90-A59Q-01 X 131261831 131261831 C A FRMD7 Missense_Mutation p.K14N 0.20 deleterious(0.01) benign(0.185) TCGA-90-A59Q-01 X 132091084 132091084 G T HS6ST2 Missense_Mutation p.H233Q 0.12 deleterious(0.01) probably_damaging(0.994) TCGA-90-A59Q-01 X 132160239 132160239 G T USP26 Missense_Mutation p.H670Q 0.16 tolerated(0.37) benign(0.082) TCGA-90-A59Q-01 X 151138715 151138715 A T GABRE Silent p.S72S 0.14 TCGA-90-A59Q-01 X 17767611 17767611 T A SCML1 Missense_Mutation p.L97Q 0.24 deleterious(0.02) possibly_damaging(0.556) TCGA-90-A59Q-01 X 19026235 19026235 G A GPR64 Silent p.L477L 0.14 TCGA-90-A59Q-01 X 19362104 19362104 T A PDHA1 5'UTR 0.17 TCGA-90-A59Q-01 X 19416347 19416347 C G MAP3K15 Missense_Mutation p.S688T 0.20 deleterious(0.04) benign(0.033) TCGA-90-A59Q-01 X 21579588 21579588 G T CNKSR2 Splice_Site p.X435_splice 0.10 TCGA-90-A59Q-01 X 27839709 27839709 T A MAGEB10 Missense_Mutation p.C96S 0.12 tolerated(1) benign(0.002) TCGA-90-A59Q-01 X 30326754 30326754 G T NR0B1 Missense_Mutation p.L243M 0.14 tolerated(0.11) possibly_damaging(0.447) TCGA-90-A59Q-01 X 34962966 34962966 C A FAM47B 3'UTR 0.20 TCGA-90-A59Q-01 X 47039407 47039407 G T RBM10 Missense_Mutation p.G344C 0.09 deleterious(0) probably_damaging(0.953) TCGA-90-A59Q-01 X 48374133 48374133 G T PORCN Silent p.G325G 0.14 TCGA-90-A59Q-01 X 48979961 48979961 C A GPKOW Missense_Mutation p.G38C 0.24 tolerated(0.12) benign(0.065) TCGA-90-A59Q-01 X 50053557 50053557 C A CCNB3 Silent p.T796T 0.08 TCGA-90-A59Q-01 X 53280074 53280074 T A IQSEC2 Missense_Mutation p.T562S 0.10 tolerated_low_confidence(0.48) benign(0.07) TCGA-90-A59Q-01 X 53622241 53622241 G A HUWE1 Missense_Mutation p.P1096S 0.19 possibly_damaging(0.791) TCGA-90-A59Q-01 X 53630343 53630343 C G HUWE1 Silent p.L954L 0.19 TCGA-90-A59Q-01 X 54359611 54359611 C A WNK3 Missense_Mutation p.D166Y 0.15 deleterious(0) probably_damaging(1) TCGA-90-A59Q-01 X 55284908 55284908 G T PAGE3 3'Flank 0.18 TCGA-90-A59Q-01 X 55478845 55478845 C G MAGEH1 Missense_Mutation p.A13G 0.33 deleterious_low_confidence(0) possibly_damaging(0.808) TCGA-90-A59Q-01 X 70345216 70345216 C A MED12 Missense_Mutation p.H748N 0.15 probably_damaging(0.924) TCGA-90-A59Q-01 X 70602923 70602923 C A TAF1 Missense_Mutation p.P639Q 0.19 deleterious(0.02) probably_damaging(1) TCGA-90-A59Q-01 X 71838590 71838590 G A PHKA1 Missense_Mutation p.A780V 0.15 deleterious(0.03) possibly_damaging(0.718) TCGA-90-A59Q-01 X 77913788 77913788 G A ZCCHC5 Nonsense_Mutation p.Q44* 0.18 TCGA-90-A59Q-01 X 83724545 83724545 C G HDX Missense_Mutation p.K62N 0.18 deleterious(0) probably_damaging(0.957) TCGA-90-A59Q-01 X 84526013 84526013 G A ZNF711 Missense_Mutation p.G489R 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-92-7340-01 10 101190349 101190349 T C GOT1 5'UTR 0.21 TCGA-92-7340-01 10 102748880 102748880 G A C10orf2 Missense_Mutation p.V305I 0.30 tolerated(0.62) benign(0.003) TCGA-92-7340-01 10 103433373 103433373 G T FBXW4 Missense_Mutation p.F138L 0.08 tolerated(0.66) benign(0.019) TCGA-92-7340-01 10 1070642 1070642 A T IDI2 Missense_Mutation p.W8R 0.26 tolerated(0.17) benign(0.164) TCGA-92-7340-01 10 108469094 108469094 G A SORCS1 Missense_Mutation p.H344Y 0.32 tolerated(0.52) benign(0.212) TCGA-92-7340-01 10 111639984 111639984 C T XPNPEP1 Missense_Mutation p.V382I 0.08 tolerated(0.1) benign(0.01) TCGA-92-7340-01 10 118101554 118101554 A T CCDC172 Missense_Mutation p.I97L 0.17 tolerated(0.37) benign(0.001) TCGA-92-7340-01 10 118236185 118236185 G A PNLIPRP3 Missense_Mutation p.M398I 0.21 tolerated(0.16) benign(0.002) TCGA-92-7340-01 10 124189313 124189313 C G PLEKHA1 Silent p.V358V 0.11 TCGA-92-7340-01 10 124352022 124352022 G T DMBT1 Missense_Mutation p.G804V 0.39 deleterious(0) unknown(0) TCGA-92-7340-01 10 124907907 124907907 G C HMX2 Missense_Mutation p.E5Q 0.07 tolerated_low_confidence(0.06) possibly_damaging(0.69) TCGA-92-7340-01 10 128147752 128147752 G T C10orf90 Missense_Mutation p.S585Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-92-7340-01 10 129897482 129897482 C G MKI67 Missense_Mutation p.R3248T 0.16 deleterious(0) probably_damaging(0.991) TCGA-92-7340-01 10 21435387 21435387 T C C10orf113 Silent p.E17E 0.20 TCGA-92-7340-01 10 23481627 23481627 G T PTF1A Missense_Mutation p.Q56H 0.33 tolerated_low_confidence(0.13) probably_damaging(0.948) TCGA-92-7340-01 10 26822423 26822423 T C APBB1IP Missense_Mutation p.M290T 0.08 deleterious(0) possibly_damaging(0.833) TCGA-92-7340-01 10 26849710 26849710 C G APBB1IP Missense_Mutation p.L436V 0.08 tolerated(0.13) benign(0.168) TCGA-92-7340-01 10 32560547 32560547 C T EPC1 Silent p.L791L 0.23 TCGA-92-7340-01 10 38121829 38121829 C A ZNF248 Missense_Mutation p.G152C 0.26 deleterious(0.03) possibly_damaging(0.754) TCGA-92-7340-01 10 50535088 50535088 G T C10orf71 3'UTR 0.30 TCGA-92-7340-01 10 58117789 58117789 C A ZWINT 3'UTR 0.35 TCGA-92-7340-01 10 68857474 68857474 A T LRRTM3 Missense_Mutation p.T556S 0.29 tolerated_low_confidence(0.95) benign(0.021) TCGA-92-7340-01 10 71690301 71690301 G T COL13A1 Missense_Mutation p.G548V 0.20 deleterious(0.01) probably_damaging(1) TCGA-92-7340-01 10 75567715 75567715 G C NDST2 Silent p.L144L 0.14 TCGA-92-7340-01 10 75848984 75848984 G C VCL Missense_Mutation p.Q351H 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-92-7340-01 10 7611670 7611670 C T ITIH5 Missense_Mutation p.G704R 0.20 deleterious(0.01) possibly_damaging(0.741) TCGA-92-7340-01 10 88421047 88421047 C T OPN4 Silent p.H336H 0.18 TCGA-92-7340-01 10 88704160 88704160 C A MMRN2 Missense_Mutation p.V172L 0.28 tolerated(0.37) benign(0.084) TCGA-92-7340-01 10 95660605 95660605 G C SLC35G1 Missense_Mutation p.Q152H 0.25 tolerated(0.16) benign(0.35) TCGA-92-7340-01 11 102480660 102480660 C G MMP20 Missense_Mutation p.E209Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-92-7340-01 11 105768996 105768996 G T GRIA4 Missense_Mutation p.G243V 0.21 tolerated(0.56) probably_damaging(1) TCGA-92-7340-01 11 20005785 20005785 C T NAV2 Silent p.D943D 0.11 TCGA-92-7340-01 11 22381002 22381002 C A SLC17A6 Missense_Mutation p.L168I 0.21 tolerated(0.1) benign(0.182) TCGA-92-7340-01 11 51515624 51515624 G A OR4C46 Missense_Mutation p.V115M 0.39 deleterious_low_confidence(0.02) benign(0.213) TCGA-92-7340-01 11 5411370 5411370 C T OR51M1 Missense_Mutation p.R248C 0.23 deleterious(0.01) probably_damaging(0.959) TCGA-92-7340-01 11 5528999 5528999 T G UBQLN3 Missense_Mutation p.H597P 0.11 deleterious(0.03) benign(0.001) TCGA-92-7340-01 11 5566289 5566289 G A OR52H1 Silent p.G155G 0.19 TCGA-92-7340-01 11 55735834 55735834 T A OR10AG1 Missense_Mutation p.I36L 0.29 tolerated(0.08) benign(0.141) TCGA-92-7340-01 11 56380881 56380881 G T OR5M1 Missense_Mutation p.A33E 0.21 deleterious(0.01) benign(0.26) TCGA-92-7340-01 11 57471999 57471999 G A MED19 3'UTR 0.23 TCGA-92-7340-01 11 5862810 5862810 G C OR52E6 Missense_Mutation p.I106M 0.27 deleterious(0) benign(0.063) TCGA-92-7340-01 11 5969285 5969286 - C OR56A3 Frame_Shift_Ins p.V238Rfs*32 0.23 TCGA-92-7340-01 11 60620756 60620756 G T PTGDR2 Missense_Mutation p.A147E 0.34 tolerated(0.28) possibly_damaging(0.66) TCGA-92-7340-01 11 61978000 61978000 G T SCGB2A1 Missense_Mutation p.E57D 0.17 tolerated(0.49) possibly_damaging(0.523) TCGA-92-7340-01 11 63988096 63988096 C A FERMT3 Nonsense_Mutation p.Y504* 0.12 TCGA-92-7340-01 11 64573767 64573767 C A MEN1 Missense_Mutation p.C334F 0.17 tolerated(0.53) benign(0.005) TCGA-92-7340-01 11 6530297 6530297 C T DNHD1 Missense_Mutation p.R370C 0.10 probably_damaging(0.953) TCGA-92-7340-01 11 65632039 65632039 C G MUS81 Silent p.L377L 0.22 TCGA-92-7340-01 11 66291341 66291341 C G BBS1 Silent p.V366V 0.19 TCGA-92-7340-01 11 66359082 66359082 G C CCDC87 Missense_Mutation p.L469V 0.09 deleterious(0) probably_damaging(0.991) TCGA-92-7340-01 11 67166076 67166076 T A PPP1CA Missense_Mutation p.Q319L 0.22 tolerated_low_confidence(0.27) benign(0.01) TCGA-92-7340-01 11 67401696 67401696 G C TBX10 Silent p.L171L 0.12 TCGA-92-7340-01 11 74415576 74415576 C A CHRDL2 Missense_Mutation p.G236C 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-92-7340-01 11 82880085 82880085 G C PCF11 Missense_Mutation p.R903T 0.21 deleterious(0.04) possibly_damaging(0.777) TCGA-92-7340-01 11 86086151 86086151 A G CCDC81 5'UTR 0.22 TCGA-92-7340-01 11 92620165 92620165 G T FAT3 Splice_Site p.X4313_splice 0.25 TCGA-92-7340-01 11 93212399 93212399 G C SMCO4 5'UTR 0.29 TCGA-92-7340-01 11 93913103 93913103 C T PANX1 Missense_Mutation p.T294M 0.19 deleterious(0.03) benign(0.042) TCGA-92-7340-01 12 100041977 100041977 T C FAM71C Missense_Mutation p.Y9H 0.09 tolerated(0.13) benign(0.111) TCGA-92-7340-01 12 11183577 11183577 G T TAS2R31 Missense_Mutation p.H120N 0.09 deleterious(0.03) benign(0.114) TCGA-92-7340-01 12 11183578 11183578 A C TAS2R31 Silent p.L119L 0.09 TCGA-92-7340-01 12 123054335 123054335 G C KNTC1 Silent p.V608V 0.14 TCGA-92-7340-01 12 124427943 124427943 C G CCDC92 Silent p.T44T 0.12 TCGA-92-7340-01 12 124427944 124427944 G T CCDC92 Missense_Mutation p.T44K 0.12 deleterious(0.04) probably_damaging(0.999) TCGA-92-7340-01 12 124427945 124427945 T G CCDC92 Missense_Mutation p.T44P 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-92-7340-01 12 124857115 124857115 G T NCOR2 Missense_Mutation p.P754T 0.12 unknown(0) TCGA-92-7340-01 12 132562295 132562295 G A EP400 3'UTR 0.25 TCGA-92-7340-01 12 14775068 14775068 T C GUCY2C Silent p.T824T 0.26 TCGA-92-7340-01 12 15722373 15722373 G C PTPRO Missense_Mutation p.D924H 0.26 deleterious(0.01) benign(0.228) TCGA-92-7340-01 12 2975565 2975565 C T FOXM1 Silent p.V323V 0.12 TCGA-92-7340-01 12 3649769 3649769 C T PRMT8 Intron 0.30 TCGA-92-7340-01 12 45209868 45209868 T C NELL2 Missense_Mutation p.Q129R 0.26 deleterious(0.05) benign(0.291) TCGA-92-7340-01 12 48961741 48961741 C T LALBA Silent p.%3D 0.19 TCGA-92-7340-01 12 52448886 52448886 G T NR4A1 Silent p.G271G 0.22 TCGA-92-7340-01 12 55794999 55794999 C T OR6C65 Silent p.A229A 0.22 TCGA-92-7340-01 12 56963751 56963751 G C RBMS2 Missense_Mutation p.G121R 0.19 deleterious(0.02) probably_damaging(1) TCGA-92-7340-01 12 57389622 57389622 C T GPR182 Missense_Mutation p.T210M 0.26 deleterious(0.04) benign(0.149) TCGA-92-7340-01 12 66765541 66765541 A C GRIP1 Missense_Mutation p.V930G 0.18 tolerated(0.34) benign(0.003) TCGA-92-7340-01 12 66826372 66826372 T A GRIP1 Missense_Mutation p.K523M 0.24 deleterious(0) probably_damaging(0.987) TCGA-92-7340-01 12 6946231 6946231 C G LEPREL2 Missense_Mutation p.T513R 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-92-7340-01 12 8023636 8023636 G A SLC2A14 5'UTR 0.23 TCGA-92-7340-01 12 8075422 8075422 C A SLC2A3 Missense_Mutation p.A423S 0.20 deleterious(0.04) probably_damaging(0.922) TCGA-92-7340-01 13 29275666 29275666 C G SLC46A3 Missense_Mutation p.E452Q 0.32 deleterious(0.01) benign(0.165) TCGA-92-7340-01 13 33629452 33629452 A T KL Missense_Mutation p.Q533H 0.29 deleterious(0.04) benign(0.316) TCGA-92-7340-01 13 53624780 53624780 T A OLFM4 Silent p.I469I 0.26 TCGA-92-7340-01 13 97485168 97485168 C A HS6ST3 Missense_Mutation p.Q378K 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-92-7340-01 14 103573136 103573136 C G EXOC3L4 Missense_Mutation p.S494C 0.25 deleterious(0) possibly_damaging(0.796) TCGA-92-7340-01 14 104640190 104640190 A G KIF26A Missense_Mutation p.K672R 0.21 deleterious(0.02) benign(0.437) TCGA-92-7340-01 14 105414695 105414695 C T AHNAK2 Missense_Mutation p.D2365N 0.29 benign(0.004) TCGA-92-7340-01 14 106204052 106204052 T G IGHG1 3'UTR 0.24 TCGA-92-7340-01 14 106405845 106405845 G T IGHV6-1 Silent p.A43A 0.21 TCGA-92-7340-01 14 106963130 106963130 C A IGHV1-45 Missense_Mutation p.R51L 0.17 deleterious(0.03) benign(0) TCGA-92-7340-01 14 21486625 21486625 C T NDRG2 Silent p.S284S 0.13 TCGA-92-7340-01 14 22636845 22636845 C G TRAV30 Missense_Mutation p.Q100E 0.34 benign(0.305) TCGA-92-7340-01 14 50088216 50088216 C T MGAT2 Missense_Mutation p.P77L 0.15 tolerated(0.32) benign(0.014) TCGA-92-7340-01 14 50101406 50101406 G A DNAAF2 Silent p.A154A 0.15 TCGA-92-7340-01 14 51087441 51087441 C G ATL1 Missense_Mutation p.F329L 0.12 deleterious(0.02) possibly_damaging(0.726) TCGA-92-7340-01 14 60063353 60063353 G T RTN1 3'UTR 0.22 TCGA-92-7340-01 14 61449235 61449235 A T SLC38A6 Nonsense_Mutation p.R39* 0.31 TCGA-92-7340-01 14 64416594 64416594 G T SYNE2 Missense_Mutation p.D154Y 0.26 probably_damaging(0.955) TCGA-92-7340-01 14 64430687 64430687 C T SYNE2 Missense_Mutation p.S320L 0.22 possibly_damaging(0.638) TCGA-92-7340-01 14 73181191 73181191 C A DPF3 Missense_Mutation p.G182C 0.26 tolerated(0.18) benign(0.002) TCGA-92-7340-01 14 75078368 75078368 T C LTBP2 Missense_Mutation p.S94G 0.19 tolerated(0.28) benign(0.002) TCGA-92-7340-01 14 91744479 91744479 A G CCDC88C Silent p.T1615T 0.33 TCGA-92-7340-01 15 24921560 24921560 C A NPAP1 Missense_Mutation p.S182R 0.21 tolerated(0.55) benign(0.29) TCGA-92-7340-01 15 25442789 25442789 A G SNORD115-15 RNA 0.22 TCGA-92-7340-01 15 25449447 25449447 G T SNORD115-20 5'Flank 0.27 TCGA-92-7340-01 15 25449448 25449448 G T SNORD115-20 5'Flank 0.27 TCGA-92-7340-01 15 25616510 25616510 G C UBE3A Missense_Mutation p.H274D 0.27 tolerated(0.22) benign(0.002) TCGA-92-7340-01 15 25925345 25925345 C A ATP10A Missense_Mutation p.W1263C 0.20 deleterious(0) probably_damaging(0.969) TCGA-92-7340-01 15 35085771 35085771 C G ACTC1 Splice_Site p.X44_splice 0.10 TCGA-92-7340-01 15 43677998 43677998 G C TUBGCP4 Missense_Mutation p.E245Q 0.06 tolerated(0.19) possibly_damaging(0.683) TCGA-92-7340-01 15 54307850 54307850 C A UNC13C Missense_Mutation p.P917Q 0.10 tolerated_low_confidence(0.21) benign(0.023) TCGA-92-7340-01 15 62165579 62165579 T C VPS13C Missense_Mutation p.T3482A 0.08 deleterious(0) possibly_damaging(0.69) TCGA-92-7340-01 15 68620491 68620491 C A ITGA11 Missense_Mutation p.A671S 0.13 deleterious(0.02) probably_damaging(0.974) TCGA-92-7340-01 15 72637844 72637844 G A HEXA Missense_Mutation p.T490I 0.15 tolerated(0.05) benign(0.004) TCGA-92-7340-01 15 78465996 78465996 G T ACSBG1 Silent p.P676P 0.14 TCGA-92-7340-01 15 79296469 79296469 G A RASGRF1 Silent p.Y724Y 0.23 TCGA-92-7340-01 15 79603672 79603672 C G TMED3 Silent p.A27A 0.21 TCGA-92-7340-01 15 82456237 82456237 T A EFTUD1 Missense_Mutation p.E613D 0.29 tolerated(0.46) benign(0.009) TCGA-92-7340-01 15 85383387 85383387 C T ALPK3 Silent p.L495L 0.09 TCGA-92-7340-01 16 20851727 20851727 G A AC004381.6 Silent p.L521L 0.24 TCGA-92-7340-01 16 33020685 33020685 A T IGHV3OR16-8 Silent p.V31V 0.40 TCGA-92-7340-01 16 49670581 49670581 C T ZNF423 Missense_Mutation p.E828K 0.23 tolerated(0.14) benign(0.224) TCGA-92-7340-01 16 56700746 56700746 T C MT1G 3'UTR 0.27 TCGA-92-7340-01 16 56864452 56864452 G A NUP93 Missense_Mutation p.E314K 0.07 deleterious(0.02) possibly_damaging(0.725) TCGA-92-7340-01 16 56918082 56918082 C G SLC12A3 Silent p.L597L 0.08 TCGA-92-7340-01 16 57752264 57752264 G A CCDC135 Silent p.L361L 0.04 TCGA-92-7340-01 16 67261028 67261028 G A TMEM208 5'UTR 0.17 TCGA-92-7340-01 16 67943086 67943086 G A PSKH1 Missense_Mutation p.R145H 0.21 tolerated(0.13) benign(0.224) TCGA-92-7340-01 16 81076767 81076767 G T ATMIN Missense_Mutation p.D222Y 0.19 tolerated(0.4) benign(0.274) TCGA-92-7340-01 16 87417017 87417017 G C FBXO31 Missense_Mutation p.R112G 0.46 deleterious(0.03) benign(0.017) TCGA-92-7340-01 16 87742014 87742014 G C KLHDC4 Silent p.G502G 0.17 TCGA-92-7340-01 17 10298447 10298447 T A MYH8 Intron 0.22 TCGA-92-7340-01 17 10415726 10415726 T A MYH1 Missense_Mutation p.E382D 0.20 deleterious(0.01) benign(0.213) TCGA-92-7340-01 17 10429937 10429937 G C MYH2 Missense_Mutation p.T1389R 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-92-7340-01 17 10545847 10545847 G C MYH3 Nonsense_Mutation p.S592* 0.09 TCGA-92-7340-01 17 12897804 12897804 G C ELAC2 Silent p.L682L 0.17 TCGA-92-7340-01 17 12916521 12916521 C A ELAC2 Intron 0.20 TCGA-92-7340-01 17 20805938 20805938 G A RP11-344E13.3 RNA 0.27 TCGA-92-7340-01 17 25753518 25753518 C A TBC1D3P5 RNA 0.11 TCGA-92-7340-01 17 27493301 27493301 C A MYO18A Nonsense_Mutation p.E220* 0.26 TCGA-92-7340-01 17 27576188 27576188 G T CRYBA1 Missense_Mutation p.Q20H 0.17 tolerated(0.14) benign(0.006) TCGA-92-7340-01 17 29226300 29226300 G A TEFM Missense_Mutation p.H324Y 0.06 tolerated(0.12) benign(0) TCGA-92-7340-01 17 29226358 29226358 G C TEFM Silent p.L304L 0.05 TCGA-92-7340-01 17 29556985 29556985 C T NF1 Silent p.L995L 0.16 TCGA-92-7340-01 17 3336602 3336602 A G OR1E2 Silent p.C178C 0.29 TCGA-92-7340-01 17 36455345 36455345 T A MRPL45 Silent p.P91P 0.16 TCGA-92-7340-01 17 36491489 36491489 A T GPR179 Missense_Mutation p.I464K 0.25 deleterious(0.01) possibly_damaging(0.836) TCGA-92-7340-01 17 38907495 38907495 C T KRT25 Silent p.L251L 0.18 TCGA-92-7340-01 17 39525858 39525858 C G KRT33B Missense_Mutation p.E49Q 0.15 deleterious(0.02) possibly_damaging(0.698) TCGA-92-7340-01 17 40280748 40280748 T A RAB5C Silent p.G112G 0.29 TCGA-92-7340-01 17 40996671 40996671 C A AOC2 Missense_Mutation p.L10M 0.21 deleterious(0) probably_damaging(0.996) TCGA-92-7340-01 17 43003657 43003657 C T KIF18B Intron 0.16 TCGA-92-7340-01 17 47869362 47869362 C T KAT7 Missense_Mutation p.R44C 0.13 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-92-7340-01 17 48270375 48270375 G T COL1A1 Missense_Mutation p.P601T 0.14 unknown(0) TCGA-92-7340-01 17 49710908 49710908 C A CA10 Missense_Mutation p.R298L 0.15 deleterious(0) probably_damaging(0.999) TCGA-92-7340-01 17 54535242 54535242 G T ANKFN1 Missense_Mutation p.D490Y 0.26 deleterious(0) probably_damaging(0.994) TCGA-92-7340-01 17 56247623 56247623 A T OR4D2 Missense_Mutation p.S203C 0.23 deleterious(0) probably_damaging(1) TCGA-92-7340-01 17 56358197 56358197 G C MPO 5'UTR 0.44 TCGA-92-7340-01 17 62754499 62754499 T C hsa-mir-6080 Splice_Site 0.17 TCGA-92-7340-01 17 67079051 67079051 T A ABCA6 Missense_Mutation p.I1527F 0.19 deleterious(0) possibly_damaging(0.835) TCGA-92-7340-01 17 74081802 74081802 G C EXOC7 Missense_Mutation p.I575M 0.10 deleterious(0) possibly_damaging(0.879) TCGA-92-7340-01 17 7579555 7579555 C - TP53 Frame_Shift_Del p.M44Ifs*79 0.30 TCGA-92-7340-01 17 76794556 76794556 G A USP36 Silent p.N1106N 0.10 TCGA-92-7340-01 17 78293254 78293254 G T RNF213 Intron 0.27 TCGA-92-7340-01 17 79412479 79412479 G T RP11-1055B8.7 Missense_Mutation p.G979C 0.42 probably_damaging(1) TCGA-92-7340-01 17 80416670 80416670 C G NARF 5'UTR 0.24 TCGA-92-7340-01 17 8402675 8402675 G A MYH10 Silent p.L1288L 0.23 TCGA-92-7340-01 18 13885537 13885537 G A MC2R 5'UTR 0.21 TCGA-92-7340-01 18 32391949 32391949 A G DTNA Missense_Mutation p.S159G 0.13 tolerated(0.11) benign(0.003) TCGA-92-7340-01 18 42643233 42643233 G A SETBP1 Missense_Mutation p.R1454H 0.27 tolerated(0.09) probably_damaging(0.996) TCGA-92-7340-01 18 43219757 43219757 A G SLC14A2 Missense_Mutation p.D297G 0.16 tolerated(0.17) benign(0.012) TCGA-92-7340-01 18 50977021 50977021 C A DCC Silent p.A1127A 0.18 TCGA-92-7340-01 18 51855781 51855781 G A STARD6 Missense_Mutation p.P139S 0.18 tolerated(0.05) possibly_damaging(0.455) TCGA-92-7340-01 18 56191252 56191252 G A ALPK2 Silent p.A1848A 0.14 TCGA-92-7340-01 18 57107042 57107042 G T CCBE1 Missense_Mutation p.P261Q 0.19 deleterious(0.01) probably_damaging(0.917) TCGA-92-7340-01 18 5890442 5890442 G T TMEM200C Silent p.R541R 0.22 TCGA-92-7340-01 18 66344382 66344382 G A TMX3 Missense_Mutation p.P385S 0.09 deleterious(0) probably_damaging(1) TCGA-92-7340-01 18 9134335 9134335 G A NDUFV2 3'UTR 0.17 TCGA-92-7340-01 19 10089634 10089634 G A COL5A3 Missense_Mutation p.P966L 0.12 unknown(0) TCGA-92-7340-01 19 10224671 10224671 T C P2RY11 Missense_Mutation p.Y128H 0.24 deleterious(0) probably_damaging(0.999) TCGA-92-7340-01 19 10602659 10602659 C T KEAP1 Missense_Mutation p.E307K 0.28 deleterious(0.03) benign(0.04) TCGA-92-7340-01 19 10828987 10828987 C T DNM2 Silent p.I23I 0.23 TCGA-92-7340-01 19 11314987 11314987 C T DOCK6 Silent p.V1703V 0.37 TCGA-92-7340-01 19 12542670 12542670 T C ZNF443 Missense_Mutation p.S106G 0.14 tolerated(0.12) benign(0.003) TCGA-92-7340-01 19 12958666 12958666 C A MAST1 Missense_Mutation p.T190N 0.15 deleterious(0) possibly_damaging(0.841) TCGA-92-7340-01 19 14267759 14267759 G A LPHN1 Missense_Mutation p.R987C 0.20 deleterious(0) probably_damaging(0.987) TCGA-92-7340-01 19 1466323 1466323 C T APC2 Missense_Mutation p.A1008V 0.21 benign(0.002) TCGA-92-7340-01 19 15839483 15839483 C G OR10H2 Silent p.G210G 0.24 TCGA-92-7340-01 19 16874747 16874747 G C NWD1 Missense_Mutation p.E748Q 0.22 deleterious(0.01) possibly_damaging(0.733) TCGA-92-7340-01 19 17003925 17003925 C G CPAMD8 Missense_Mutation p.L1931F 0.28 tolerated_low_confidence(0.08) benign(0.001) TCGA-92-7340-01 19 17308599 17308599 A T MYO9B Splice_Site p.X1349_splice 0.18 TCGA-92-7340-01 19 17534362 17534362 C - MVB12A Frame_Shift_Del p.K158Sfs*85 0.23 TCGA-92-7340-01 19 19257458 19257458 C G MEF2B Splice_Site p.X226_splice 0.26 TCGA-92-7340-01 19 20976656 20976656 G C ZNF66 Missense_Mutation p.Q66H 0.24 deleterious(0.01) benign(0.272) TCGA-92-7340-01 19 22271585 22271585 C A ZNF257 Missense_Mutation p.Q345K 0.21 tolerated(1) benign(0) TCGA-92-7340-01 19 22847669 22847669 A G ZNF492 Missense_Mutation p.K400E 0.19 deleterious(0) possibly_damaging(0.806) TCGA-92-7340-01 19 23927390 23927390 T A ZNF681 Missense_Mutation p.Q321L 0.19 tolerated(0.72) benign(0.438) TCGA-92-7340-01 19 2877655 2877655 T C ZNF556 Silent p.C233C 0.16 TCGA-92-7340-01 19 2918364 2918364 A G ZNF57 3'UTR 0.25 TCGA-92-7340-01 19 2993511 2993511 A G TLE6 Missense_Mutation p.S490G 0.10 tolerated(0.38) possibly_damaging(0.588) TCGA-92-7340-01 19 31039110 31039110 G T ZNF536 Missense_Mutation p.G862W 0.27 deleterious(0) probably_damaging(0.987) TCGA-92-7340-01 19 38968387 38968387 C A RYR1 Missense_Mutation p.P1444H 0.20 probably_damaging(1) TCGA-92-7340-01 19 3985410 3985410 G C EEF2 5'UTR 0.29 TCGA-92-7340-01 19 40030380 40030380 C A EID2 Nonsense_Mutation p.E114* 0.07 TCGA-92-7340-01 19 43234207 43234207 C T PSG3 Silent p.P237P 0.10 TCGA-92-7340-01 19 43243126 43243126 C G PSG3 Missense_Mutation p.Q60H 0.19 deleterious(0.01) benign(0.026) TCGA-92-7340-01 19 43244668 43244668 C T PSG3 5'UTR 0.19 TCGA-92-7340-01 19 45575433 45575433 G A ZNF296 Missense_Mutation p.P285L 0.22 tolerated(0.67) benign(0) TCGA-92-7340-01 19 46289039 46289039 C A DMWD Missense_Mutation p.R572L 0.34 deleterious(0.02) benign(0.127) TCGA-92-7340-01 19 49166799 49166799 G A NTN5 Silent p.D342D 0.11 TCGA-92-7340-01 19 49621181 49621181 G A LIN7B Missense_Mutation p.V170I 0.11 tolerated(0.24) benign(0.139) TCGA-92-7340-01 19 49813020 49813020 G A SLC6A16 Missense_Mutation p.S255L 0.22 deleterious(0) probably_damaging(0.983) TCGA-92-7340-01 19 50862757 50862757 C T NAPSA Intron 0.27 TCGA-92-7340-01 19 52659326 52659326 T C ZNF836 Missense_Mutation p.E537G 0.18 tolerated(0.28) benign(0.315) TCGA-92-7340-01 19 52934675 52934675 G C ZNF534 5'UTR 0.17 TCGA-92-7340-01 19 53667958 53667958 T C ZNF665 Silent p.E595E 0.19 TCGA-92-7340-01 19 53770202 53770202 C T VN1R4 Silent p.V239V 0.24 TCGA-92-7340-01 19 54080363 54080363 G T ZNF331 Silent p.G183G 0.21 TCGA-92-7340-01 19 5592810 5592810 G T SAFB2 Missense_Mutation p.H766N 0.34 tolerated(0.14) benign(0.403) TCGA-92-7340-01 19 56390164 56390164 G T NLRP4 Nonsense_Mutation p.E901* 0.19 TCGA-92-7340-01 19 56539800 56539800 G T NLRP5 Missense_Mutation p.R734L 0.16 deleterious(0.01) benign(0.414) TCGA-92-7340-01 19 57326101 57326101 T A PEG3 Missense_Mutation p.S1237C 0.21 tolerated(0.11) probably_damaging(0.967) TCGA-92-7340-01 19 57327826 57327826 A T PEG3 Missense_Mutation p.C662S 0.13 tolerated(0.11) benign(0.155) TCGA-92-7340-01 19 58118115 58118115 G T ZNF530 Missense_Mutation p.V408L 0.19 deleterious(0.01) benign(0.268) TCGA-92-7340-01 19 58639871 58639871 G C ZNF329 Missense_Mutation p.L334V 0.11 tolerated(0.19) possibly_damaging(0.447) TCGA-92-7340-01 19 6416625 6416625 C T KHSRP Missense_Mutation p.G455E 0.12 deleterious(0) probably_damaging(1) TCGA-92-7340-01 19 681490 681490 G A FSTL3 Silent p.S221S 0.31 TCGA-92-7340-01 19 6820774 6820774 A T VAV1 Missense_Mutation p.K89M 0.20 deleterious(0) probably_damaging(0.969) TCGA-92-7340-01 19 7119532 7119532 G C INSR Missense_Mutation p.S1241C 0.21 deleterious(0) possibly_damaging(0.899) TCGA-92-7340-01 19 9046115 9046115 G A MUC16 Missense_Mutation p.A11839V 0.24 benign(0.02) TCGA-92-7340-01 19 9065988 9065988 G A MUC16 Missense_Mutation p.P7153L 0.16 unknown(0) TCGA-92-7340-01 19 9529238 9529238 G C ZNF266 5'UTR 0.07 TCGA-92-7340-01 1 101190387 101190387 T C VCAM1 Missense_Mutation p.V290A 0.20 deleterious(0.03) benign(0.11) TCGA-92-7340-01 1 102270058 102270058 C G OLFM3 Missense_Mutation p.K371N 0.27 deleterious(0) probably_damaging(0.998) TCGA-92-7340-01 1 111825294 111825294 G A CHIAP2 RNA 0.12 TCGA-92-7340-01 1 113257809 113257809 C A PPM1J Missense_Mutation p.A39S 0.36 tolerated(0.36) benign(0) TCGA-92-7340-01 1 149784982 149784982 G A HIST2H3D Silent p.F85F 0.07 TCGA-92-7340-01 1 150305211 150305211 G C PRPF3 Silent p.L160L 0.07 TCGA-92-7340-01 1 150552057 150552057 C A MCL1 5'UTR 0.53 TCGA-92-7340-01 1 152281882 152281882 G T FLG Missense_Mutation p.S1827Y 0.09 possibly_damaging(0.608) TCGA-92-7340-01 1 153747940 153747940 G C SLC27A3 Missense_Mutation p.W36C 0.13 deleterious_low_confidence(0.01) unknown(0) TCGA-92-7340-01 1 155296757 155296757 C G RUSC1 Missense_Mutation p.L750V 0.19 tolerated(0.11) benign(0.033) TCGA-92-7340-01 1 156236344 156236344 T A SMG5 Missense_Mutation p.S415C 0.18 tolerated(0.06) possibly_damaging(0.779) TCGA-92-7340-01 1 156812952 156812952 A G INSRR Silent p.F990F 0.19 TCGA-92-7340-01 1 15819301 15819301 C G CASP9 3'UTR 0.21 TCGA-92-7340-01 1 158369084 158369084 G A OR10T2 Missense_Mutation p.T58I 0.35 tolerated(0.09) benign(0.016) TCGA-92-7340-01 1 159900181 159900181 G A IGSF9 Missense_Mutation p.P621L 0.35 tolerated(0.4) benign(0.001) TCGA-92-7340-01 1 166927107 166927108 - A ILDR2 Frame_Shift_Ins p.C93Lfs*35 0.14 TCGA-92-7340-01 1 168260577 168260577 C A TBX19 Missense_Mutation p.S128Y 0.22 deleterious(0) probably_damaging(1) TCGA-92-7340-01 1 169076165 169076165 G T ATP1B1 Splice_Site p.X33_splice 0.24 TCGA-92-7340-01 1 176668720 176668720 G C PAPPA2 Silent p.T1077T 0.24 TCGA-92-7340-01 1 176918403 176918403 C G ASTN1 Missense_Mutation p.G658R 0.19 deleterious(0) probably_damaging(1) TCGA-92-7340-01 1 177250119 177250119 A T BRINP2 Missense_Mutation p.M603L 0.15 tolerated(0.32) benign(0.001) TCGA-92-7340-01 1 17942553 17942553 G T ARHGEF10L Intron 0.25 TCGA-92-7340-01 1 179564886 179564886 T A TDRD5 Missense_Mutation p.M255K 0.20 tolerated(0.43) benign(0.038) TCGA-92-7340-01 1 186324800 186324800 T C TPR Silent p.T663T 0.19 TCGA-92-7340-01 1 190067445 190067445 C A BRINP3 Silent p.V668V 0.24 TCGA-92-7340-01 1 196250075 196250075 C T KCNT2 Missense_Mutation p.R942K 0.27 deleterious(0.03) possibly_damaging(0.84) TCGA-92-7340-01 1 197411510 197411510 G A CRB1 Intron 0.09 TCGA-92-7340-01 1 200974489 200974489 C T KIF21B Missense_Mutation p.A227T 0.14 deleterious(0) probably_damaging(0.993) TCGA-92-7340-01 1 205138784 205138784 G C DSTYK Missense_Mutation p.F277L 0.24 tolerated(1) benign(0.012) TCGA-92-7340-01 1 207890977 207890977 C A CR1L Missense_Mutation p.P528H 0.19 tolerated(0.16) benign(0.021) TCGA-92-7340-01 1 208218546 208218546 G T PLXNA2 Missense_Mutation p.L1169I 0.23 tolerated(0.08) possibly_damaging(0.814) TCGA-92-7340-01 1 214170860 214170860 G A PROX1 Missense_Mutation p.E328K 0.28 tolerated(0.25) benign(0.171) TCGA-92-7340-01 1 215847873 215847873 T C USH2A Missense_Mutation p.I4460M 0.20 probably_damaging(0.983) TCGA-92-7340-01 1 215933109 215933109 G T USH2A Silent p.P3708P 0.19 TCGA-92-7340-01 1 217955532 217955532 T C SPATA17 Missense_Mutation p.I247T 0.25 tolerated(0.33) benign(0.006) TCGA-92-7340-01 1 223987704 223987704 C A TP53BP2 Missense_Mutation p.R461L 0.19 tolerated(0.06) probably_damaging(0.998) TCGA-92-7340-01 1 227935820 227935820 G C SNAP47 Missense_Mutation p.G173A 0.12 tolerated(0.35) benign(0.107) TCGA-92-7340-01 1 228558845 228558845 C T OBSCN Missense_Mutation p.S7746F 0.19 probably_damaging(0.992) TCGA-92-7340-01 1 228645168 228645168 C T HIST3H2A Silent p.L117L 0.18 TCGA-92-7340-01 1 23763437 23763437 G C ASAP3 Silent p.L481L 0.17 TCGA-92-7340-01 1 237756848 237756848 T A RYR2 Missense_Mutation p.F1450I 0.13 probably_damaging(0.953) TCGA-92-7340-01 1 237804242 237804242 G C RYR2 Silent p.A2387A 0.23 TCGA-92-7340-01 1 247875842 247875842 C T OR6F1 Nonsense_Mutation p.W72* 0.30 TCGA-92-7340-01 1 248366885 248366885 G T OR2M3 Silent p.R172R 0.23 TCGA-92-7340-01 1 248570356 248570356 C A OR2T1 Missense_Mutation p.A354D 0.19 tolerated(0.07) benign(0.365) TCGA-92-7340-01 1 248845159 248845159 G T OR14I1 Missense_Mutation p.S149R 0.38 deleterious(0) benign(0.254) TCGA-92-7340-01 1 27874949 27874949 C T AHDC1 Silent p.Q1226Q 0.13 TCGA-92-7340-01 1 31351441 31351441 C T SDC3 Intron 0.21 TCGA-92-7340-01 1 33237659 33237659 C T KIAA1522 Missense_Mutation p.P960L 0.09 deleterious(0.02) possibly_damaging(0.777) TCGA-92-7340-01 1 34498254 34498254 G A CSMD2 Missense_Mutation p.S113F 0.25 tolerated(0.12) possibly_damaging(0.609) TCGA-92-7340-01 1 3745925 3745925 C A CEP104 Missense_Mutation p.A686S 0.12 deleterious(0.03) possibly_damaging(0.759) TCGA-92-7340-01 1 43903151 43903151 C T SZT2 Nonsense_Mutation p.R2031* 0.07 TCGA-92-7340-01 1 53699289 53699289 C G MAGOH Missense_Mutation p.K61N 0.05 deleterious(0) probably_damaging(0.961) TCGA-92-7340-01 1 54273454 54273454 T A NDC1 Missense_Mutation p.R256W 0.13 deleterious(0.03) probably_damaging(0.982) TCGA-92-7340-01 1 70460276 70460276 G C LRRC7 Missense_Mutation p.D284H 0.15 deleterious(0) probably_damaging(0.997) TCGA-92-7340-01 1 70641628 70641628 T C LRRC40 Missense_Mutation p.E281G 0.28 tolerated(0.56) benign(0) TCGA-92-7340-01 1 84668379 84668379 C T PRKACB Missense_Mutation p.A266V 0.11 deleterious(0) probably_damaging(0.998) TCGA-92-7340-01 1 84679969 84679969 C G PRKACB Missense_Mutation p.T347R 0.10 tolerated(0.32) benign(0.309) TCGA-92-7340-01 1 85462578 85462578 A T MCOLN2 5'UTR 0.15 TCGA-92-7340-01 1 86591050 86591050 A C COL24A1 Silent p.S323S 0.25 TCGA-92-7340-01 1 89481089 89481089 G A GBP3 Silent p.L67L 0.14 TCGA-92-7340-01 1 91851375 91851375 C A HFM1 Missense_Mutation p.D171Y 0.16 deleterious_low_confidence(0.01) probably_damaging(0.935) TCGA-92-7340-01 1 94639581 94639581 G C ARHGAP29 Missense_Mutation p.D1210E 0.14 tolerated_low_confidence(1) benign(0.001) TCGA-92-7340-01 1 97278977 97278977 G T PTBP2 3'UTR 0.13 TCGA-92-7340-01 20 17950602 17950602 T A MGME1 Missense_Mutation p.S34T 0.10 tolerated(0.38) benign(0.055) TCGA-92-7340-01 20 2097841 2097841 C G STK35 Silent p.V474V 0.14 TCGA-92-7340-01 20 35668605 35668605 C A RBL1 Missense_Mutation p.M618I 0.16 tolerated(0.95) benign(0) TCGA-92-7340-01 20 43384603 43384603 G C RIMS4 3'UTR 0.25 TCGA-92-7340-01 20 44815242 44815242 G A CDH22 Silent p.L550L 0.12 TCGA-92-7340-01 20 48461589 48461589 G A SLC9A8 Missense_Mutation p.R122H 0.13 tolerated(0.19) benign(0.042) TCGA-92-7340-01 20 50408328 50408328 T C SALL4 Missense_Mutation p.T232A 0.21 deleterious(0.02) probably_damaging(0.993) TCGA-92-7340-01 20 53260092 53260092 C T DOK5 Silent p.S277S 0.30 TCGA-92-7340-01 21 10862980 10862980 C A IGHV1OR21-1 Missense_Mutation p.D92E 0.07 deleterious(0.05) benign(0.144) TCGA-92-7340-01 21 11038968 11038968 C G BAGE2 RNA 0.03 TCGA-92-7340-01 21 31709771 31709771 G A KRTAP27-1 Silent p.D72D 0.15 TCGA-92-7340-01 21 34120990 34120990 G A PAXBP1 Silent p.S581S 0.39 TCGA-92-7340-01 21 47548891 47548891 G A COL6A2 Intron 0.11 TCGA-92-7340-01 22 23265055 23265055 G A IGLC7 Silent p.E97E 0.15 TCGA-92-7340-01 22 24133945 24133945 G A SMARCB1 Silent p.V32V 0.25 TCGA-92-7340-01 22 24891395 24891395 G A UPB1 Silent p.S8S 0.11 TCGA-92-7340-01 22 26830042 26830042 G T ASPHD2 Missense_Mutation p.R154L 0.22 tolerated(0.13) probably_damaging(0.997) TCGA-92-7340-01 22 30200640 30200640 G T ASCC2 Nonsense_Mutation p.S447* 0.11 TCGA-92-7340-01 22 30662783 30662783 C A OSM Silent p.G2G 0.55 TCGA-92-7340-01 22 31741300 31741300 C T PATZ1 Missense_Mutation p.G97R 0.20 tolerated_low_confidence(0.07) benign(0.033) TCGA-92-7340-01 22 37770561 37770561 G A ELFN2 Silent p.T338T 0.06 TCGA-92-7340-01 22 39382096 39382096 G T APOBEC3B Nonsense_Mutation p.E152* 0.12 TCGA-92-7340-01 22 41320387 41320387 C T XPNPEP3 Missense_Mutation p.H420Y 0.16 deleterious(0) probably_damaging(0.998) TCGA-92-7340-01 22 46931957 46931957 C G CELSR1 Missense_Mutation p.E371Q 0.09 tolerated(0.12) probably_damaging(0.998) TCGA-92-7340-01 22 50167763 50167763 G A BRD1 3'UTR 0.12 TCGA-92-7340-01 2 100199373 100199373 C T AFF3 Missense_Mutation p.E919K 0.17 tolerated(0.08) benign(0.04) TCGA-92-7340-01 2 108627054 108627054 A G SLC5A7 Missense_Mutation p.I494V 0.14 tolerated(1) benign(0) TCGA-92-7340-01 2 110332307 110332307 C T SEPT10 Missense_Mutation p.E151K 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-92-7340-01 2 141460027 141460027 G T LRP1B Missense_Mutation p.A2040E 0.19 possibly_damaging(0.849) TCGA-92-7340-01 2 141533723 141533723 C G LRP1B Missense_Mutation p.R1815P 0.12 possibly_damaging(0.453) TCGA-92-7340-01 2 153575035 153575035 G C ARL6IP6 5'UTR 0.15 TCGA-92-7340-01 2 160035560 160035560 C A TANC1 Missense_Mutation p.S799Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-92-7340-01 2 163230142 163230142 C A KCNH7 Missense_Mutation p.Q1054H 0.25 tolerated(0.13) benign(0.003) TCGA-92-7340-01 2 170606174 170606174 T C KLHL23 Missense_Mutation p.W537R 0.11 deleterious(0) probably_damaging(1) TCGA-92-7340-01 2 170937184 170937184 C T UBR3 Missense_Mutation p.R1847W 0.07 deleterious(0) probably_damaging(0.997) TCGA-92-7340-01 2 176981543 176981543 C T HOXD10 5'UTR 0.11 TCGA-92-7340-01 2 179426155 179426155 G T TTN Missense_Mutation p.A28235D 0.15 TCGA-92-7340-01 2 179483379 179483379 C A TTN Missense_Mutation p.G15633V 0.17 TCGA-92-7340-01 2 179500896 179500896 C T TTN Missense_Mutation p.S13801N 0.33 TCGA-92-7340-01 2 179549124 179549124 C A TTN Missense_Mutation p.M10885I 0.27 TCGA-92-7340-01 2 179595686 179595686 C G TTN Silent p.G5902G 0.18 TCGA-92-7340-01 2 185802249 185802249 T C ZNF804A Missense_Mutation p.I709T 0.10 tolerated(0.15) benign(0.025) TCGA-92-7340-01 2 196599792 196599792 C T SLC39A10 3'UTR 0.17 TCGA-92-7340-01 2 196682446 196682446 C T DNAH7 Silent p.L3133L 0.22 TCGA-92-7340-01 2 197171263 197171263 G C HECW2 Silent p.P921P 0.34 TCGA-92-7340-01 2 197791323 197791323 A C PGAP1 Silent p.V6V 0.10 TCGA-92-7340-01 2 20886779 20886779 C A C2orf43 Nonsense_Mutation p.E288* 0.18 TCGA-92-7340-01 2 215928826 215928826 G T ABCA12 Missense_Mutation p.R94S 0.34 tolerated(0.96) benign(0.165) TCGA-92-7340-01 2 226447629 226447629 C A NYAP2 Missense_Mutation p.P499Q 0.45 tolerated(0.67) benign(0.008) TCGA-92-7340-01 2 231380435 231380435 A T SP100 Intron 0.13 TCGA-92-7340-01 2 233322341 233322341 G A ALPI Missense_Mutation p.D239N 0.23 tolerated(0.17) benign(0.01) TCGA-92-7340-01 2 238462379 238462379 C A MLPH 3'UTR 0.32 TCGA-92-7340-01 2 242179211 242179211 G C HDLBP Missense_Mutation p.L806V 0.18 tolerated(0.29) benign(0.005) TCGA-92-7340-01 2 242179481 242179481 G C HDLBP Silent p.L742L 0.20 TCGA-92-7340-01 2 242179523 242179523 G T HDLBP Missense_Mutation p.F728L 0.16 deleterious(0.02) benign(0.06) TCGA-92-7340-01 2 26257432 26257432 G C RAB10 5'UTR 0.22 TCGA-92-7340-01 2 27360810 27360810 G C C2orf53 Missense_Mutation p.P130A 0.19 tolerated(0.39) possibly_damaging(0.52) TCGA-92-7340-01 2 38956730 38956730 G C GALM Missense_Mutation p.D223H 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-92-7340-01 2 48822418 48822418 A G STON1 Missense_Mutation p.I729V 0.18 tolerated(0.23) benign(0) TCGA-92-7340-01 2 61149320 61149320 G A REL Missense_Mutation p.D504N 0.45 tolerated_low_confidence(0.47) possibly_damaging(0.848) TCGA-92-7340-01 2 71043951 71043951 C G CLEC4F Missense_Mutation p.E188Q 0.21 tolerated(0.1) probably_damaging(0.987) TCGA-92-7340-01 2 73868450 73868450 C G NAT8 Silent p.L102L 0.19 TCGA-92-7340-01 2 74435838 74435838 C G MTHFD2 Missense_Mutation p.I184M 0.07 tolerated(0.06) benign(0.124) TCGA-92-7340-01 2 88427572 88427572 C A FABP1 5'UTR 0.19 TCGA-92-7340-01 2 88857420 88857420 G A EIF2AK3 Missense_Mutation p.P1062L 0.16 deleterious(0) probably_damaging(0.968) TCGA-92-7340-01 3 108174706 108174706 C A MYH15 Missense_Mutation p.R733S 0.17 deleterious(0) probably_damaging(0.999) TCGA-92-7340-01 3 10861461 10861461 A T SLC6A11 Silent p.A152A 0.28 TCGA-92-7340-01 3 121304965 121304965 C A ARGFX Missense_Mutation p.P156T 0.25 deleterious(0.02) benign(0.255) TCGA-92-7340-01 3 122259327 122259327 C T PARP9 Missense_Mutation p.R621H 0.13 tolerated(0.48) benign(0.007) TCGA-92-7340-01 3 122628959 122628959 G T SEMA5B 3'UTR 0.16 TCGA-92-7340-01 3 124492626 124492626 G T ITGB5 Silent p.L609L 0.08 TCGA-92-7340-01 3 126385972 126385972 C G NUP210P1 RNA 0.19 TCGA-92-7340-01 3 127336217 127336217 C T MCM2 Silent p.R623R 0.14 TCGA-92-7340-01 3 129195611 129195611 G T IFT122 Missense_Mutation p.V423F 0.25 deleterious(0) probably_damaging(0.996) TCGA-92-7340-01 3 130715581 130715581 T G ATP2C1 Silent p.P762P 0.27 TCGA-92-7340-01 3 130715582 130715582 C G ATP2C1 Missense_Mutation p.L763V 0.26 deleterious(0) probably_damaging(0.945) TCGA-92-7340-01 3 137843196 137843196 G A A4GNT Silent p.L311L 0.36 TCGA-92-7340-01 3 138383915 138383915 C G PIK3CB Missense_Mutation p.D879H 0.07 deleterious(0.01) probably_damaging(0.989) TCGA-92-7340-01 3 140401943 140401943 C G TRIM42 Missense_Mutation p.I327M 0.06 tolerated(0.13) benign(0.025) TCGA-92-7340-01 3 146246417 146246417 A G PLSCR1 Missense_Mutation p.L99S 0.18 deleterious(0) probably_damaging(1) TCGA-92-7340-01 3 147128077 147128077 G T ZIC1 Missense_Mutation p.G60C 0.13 tolerated(0.1) probably_damaging(0.992) TCGA-92-7340-01 3 148901387 148901387 G C CP Nonsense_Mutation p.S764* 0.17 TCGA-92-7340-01 3 149093474 149093474 C T TM4SF1 Missense_Mutation p.R87Q 0.16 tolerated(0.06) benign(0.355) TCGA-92-7340-01 3 149095301 149095301 G A TM4SF1 Missense_Mutation p.H12Y 0.06 tolerated(1) benign(0.002) TCGA-92-7340-01 3 154859795 154859795 A T MME Missense_Mutation p.N325Y 0.17 tolerated(1) benign(0.001) TCGA-92-7340-01 3 159584070 159584070 G A IQCJ-SCHIP1 Missense_Mutation p.R369Q 0.18 deleterious(0) probably_damaging(0.988) TCGA-92-7340-01 3 167189375 167189375 C T SERPINI2 Splice_Site p.X83_splice 0.08 TCGA-92-7340-01 3 169840466 169840466 C G PHC3 Missense_Mutation p.D619H 0.11 tolerated(0.11) possibly_damaging(0.893) TCGA-92-7340-01 3 17052316 17052316 A G PLCL2 Missense_Mutation p.Q367R 0.20 tolerated(0.47) benign(0.036) TCGA-92-7340-01 3 178916946 178916946 G C PIK3CA Missense_Mutation p.K111N 0.05 deleterious(0) probably_damaging(0.989) TCGA-92-7340-01 3 179474900 179474900 A G USP13 Intron 0.39 TCGA-92-7340-01 3 183689450 183689450 G A ABCC5 Silent p.D554D 0.09 TCGA-92-7340-01 3 184100469 184100469 G C CHRD Missense_Mutation p.V297L 0.18 tolerated(0.6) benign(0.049) TCGA-92-7340-01 3 185643340 185643340 C T TRA2B Missense_Mutation p.R82H 0.09 deleterious(0.02) unknown(0) TCGA-92-7340-01 3 186303202 186303202 G A DNAJB11 3'UTR 0.10 TCGA-92-7340-01 3 197420610 197420610 C T KIAA0226 Missense_Mutation p.E588K 0.13 deleterious(0.03) benign(0.397) TCGA-92-7340-01 3 44684165 44684165 T C ZNF197 Missense_Mutation p.C515R 0.32 deleterious(0) probably_damaging(0.998) TCGA-92-7340-01 3 48658315 48658315 C T TMEM89 Missense_Mutation p.R147Q 0.32 tolerated(1) benign(0.001) TCGA-92-7340-01 3 49168391 49168391 C G LAMB2 Missense_Mutation p.E303Q 0.08 deleterious(0.02) possibly_damaging(0.799) TCGA-92-7340-01 3 93802957 93802957 A G NSUN3 Missense_Mutation p.I43M 0.20 deleterious(0.02) possibly_damaging(0.453) TCGA-92-7340-01 3 97887958 97887958 G A OR5H15 Missense_Mutation p.G139R 0.16 tolerated(1) benign(0.002) TCGA-92-7340-01 4 103966118 103966118 C T SLC9B2 Missense_Mutation p.E309K 0.31 deleterious(0) probably_damaging(0.968) TCGA-92-7340-01 4 114279818 114279818 C A ANK2 Silent p.L3348L 0.22 TCGA-92-7340-01 4 119059237 119059237 A G NDST3 Missense_Mutation p.Y418C 0.20 deleterious(0) probably_damaging(0.983) TCGA-92-7340-01 4 126370779 126370779 C G FAT4 Missense_Mutation p.P2870A 0.07 probably_damaging(0.998) TCGA-92-7340-01 4 146031309 146031309 A C ABCE1 Missense_Mutation p.N154H 0.20 deleterious(0) benign(0.337) TCGA-92-7340-01 4 146575211 146575211 G T MMAA Missense_Mutation p.L295F 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-92-7340-01 4 168155394 168155394 C A SPOCK3 Intron 0.33 TCGA-92-7340-01 4 177098739 177098739 G A WDR17 Silent p.V1261V 0.23 TCGA-92-7340-01 4 184240667 184240667 G C CLDN22 3'UTR 0.10 TCGA-92-7340-01 4 187538157 187538157 A C FAT1 Splice_Site p.X3025_splice 0.19 TCGA-92-7340-01 4 189063590 189063590 C A TRIML1 Missense_Mutation p.A230E 0.07 tolerated(0.36) benign(0) TCGA-92-7340-01 4 2746556 2746556 C T TNIP2 Silent p.R258R 0.13 TCGA-92-7340-01 4 52860597 52860597 G C LRRC66 Nonsense_Mutation p.S864* 0.13 TCGA-92-7340-01 4 57272687 57272687 C T PPAT Missense_Mutation p.V126I 0.18 tolerated(0.17) benign(0.024) TCGA-92-7340-01 4 68795754 68795754 C G TMPRSS11A Missense_Mutation p.E112Q 0.09 tolerated(0.13) benign(0.077) TCGA-92-7340-01 4 71346970 71346970 C A MUC7 Missense_Mutation p.P170H 0.35 deleterious(0.03) unknown(0) TCGA-92-7340-01 4 76944639 76944639 G T CXCL10 5'UTR 0.33 TCGA-92-7340-01 4 78079799 78079799 G C CCNG2 Silent p.L38L 0.05 TCGA-92-7340-01 4 79851334 79851334 T C PAQR3 Missense_Mutation p.Y165C 0.29 deleterious(0) possibly_damaging(0.647) TCGA-92-7340-01 5 13900397 13900397 T C DNAH5 Missense_Mutation p.Q726R 0.21 benign(0.227) TCGA-92-7340-01 5 139745556 139745556 C A SLC4A9 Missense_Mutation p.F640L 0.22 tolerated(1) benign(0.002) TCGA-92-7340-01 5 140187421 140187421 G A PCDHA4 Missense_Mutation p.G217R 0.21 tolerated_low_confidence(0.05) benign(0.4) TCGA-92-7340-01 5 140202574 140202574 C G PCDHA5 Missense_Mutation p.S405W 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-92-7340-01 5 140214951 140214951 C T PCDHA7 Missense_Mutation p.P328L 0.28 tolerated_low_confidence(0.29) benign(0.016) TCGA-92-7340-01 5 140481562 140481562 C A PCDHB3 Missense_Mutation p.D443E 0.34 deleterious_low_confidence(0) possibly_damaging(0.76) TCGA-92-7340-01 5 140516630 140516630 G T PCDHB5 Silent p.P538P 0.28 TCGA-92-7340-01 5 154244859 154244859 C T CNOT8 Silent p.I75I 0.25 TCGA-92-7340-01 5 16067802 16067802 G A MARCH11 Silent p.D329D 0.36 TCGA-92-7340-01 5 180415962 180415962 C G BTNL3 5'UTR 0.30 TCGA-92-7340-01 5 19747219 19747219 C A CDH18 Nonsense_Mutation p.E119* 0.29 TCGA-92-7340-01 5 205968 205968 G C CCDC127 Missense_Mutation p.A76G 0.16 tolerated(0.27) benign(0.004) TCGA-92-7340-01 5 21755740 21755740 C T CDH12 Silent p.G615G 0.09 TCGA-92-7340-01 5 26906133 26906133 G C CDH9 Missense_Mutation p.S249C 0.17 deleterious(0) probably_damaging(0.993) TCGA-92-7340-01 5 32087569 32087569 G T PDZD2 Missense_Mutation p.V1339F 0.21 tolerated(0.07) benign(0.157) TCGA-92-7340-01 5 40681554 40681554 G T PTGER4 Silent p.L153L 0.31 TCGA-92-7340-01 5 41159335 41159335 C A C6 Missense_Mutation p.G569C 0.22 deleterious(0.03) probably_damaging(0.963) TCGA-92-7340-01 5 43245846 43245846 C T NIM1K 5'UTR 0.05 TCGA-92-7340-01 5 45262411 45262411 G T HCN1 Missense_Mutation p.T762K 0.21 tolerated_low_confidence(0.57) benign(0.022) TCGA-92-7340-01 5 68677833 68677833 C A RAD17 Missense_Mutation p.P164T 0.09 deleterious(0) probably_damaging(0.996) TCGA-92-7340-01 5 79441974 79441990 AGTAGGAGTAGATGTAG - SERINC5 Frame_Shift_Del p.Y388Pfs*? 0.30 TCGA-92-7340-01 6 100006290 100006290 T C CCNC Intron 0.25 TCGA-92-7340-01 6 123319203 123319203 C A CLVS2 Missense_Mutation p.P94H 0.27 deleterious(0.01) benign(0.091) TCGA-92-7340-01 6 126080605 126080605 C G HEY2 Missense_Mutation p.S224C 0.09 deleterious(0.01) possibly_damaging(0.764) TCGA-92-7340-01 6 129486766 129486766 C T LAMA2 Missense_Mutation p.P418S 0.09 tolerated(0.08) benign(0.044) TCGA-92-7340-01 6 132032059 132032059 A G CTAGE9 Silent p.D33D 0.25 TCGA-92-7340-01 6 143081153 143081153 C T HIVEP2 Missense_Mutation p.R2091K 0.17 tolerated(0.46) probably_damaging(0.986) TCGA-92-7340-01 6 144416162 144416162 C G SF3B5 3'UTR 0.36 TCGA-92-7340-01 6 144772524 144772524 A G UTRN Silent p.A697A 0.44 TCGA-92-7340-01 6 150240756 150240756 C G RAET1G Silent p.L94L 0.22 TCGA-92-7340-01 6 152457864 152457864 C G SYNE1 Missense_Mutation p.E8516D 0.10 benign(0.142) TCGA-92-7340-01 6 152542024 152542024 T C SYNE1 Missense_Mutation p.K7272E 0.12 benign(0.015) TCGA-92-7340-01 6 152676020 152676020 G C SYNE1 Missense_Mutation p.A3567G 0.19 benign(0.021) TCGA-92-7340-01 6 24578374 24578374 C A KIAA0319 Missense_Mutation p.R490L 0.17 tolerated(0.46) benign(0.255) TCGA-92-7340-01 6 27419104 27419104 T C ZNF184 Missense_Mutation p.Q745R 0.11 tolerated(0.21) benign(0.022) TCGA-92-7340-01 6 29054662 29054662 T A OR2B3 Nonsense_Mutation p.R122* 0.17 TCGA-92-7340-01 6 29364476 29364476 G A OR12D2 5'UTR 0.23 TCGA-92-7340-01 6 31323333 31323333 G C HLA-B Missense_Mutation p.S219C 0.08 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-92-7340-01 6 31595653 31595653 C T PRRC2A Missense_Mutation p.R468W 0.24 unknown(0) TCGA-92-7340-01 6 41655519 41655519 C A TFEB Missense_Mutation p.E233D 0.22 deleterious(0.01) benign(0.174) TCGA-92-7340-01 6 43266316 43266316 G A SLC22A7 Missense_Mutation p.D74N 0.10 tolerated(0.1) benign(0.03) TCGA-92-7340-01 6 43413625 43413625 C T ABCC10 Silent p.L1107L 0.12 TCGA-92-7340-01 6 44198148 44198148 G A SLC29A1 Silent p.T173T 0.07 TCGA-92-7340-01 6 4892568 4892568 C G CDYL Missense_Mutation p.P216A 0.20 tolerated(0.05) possibly_damaging(0.452) TCGA-92-7340-01 6 51612823 51612823 C G PKHD1 Missense_Mutation p.Q3197H 0.22 tolerated(0.52) benign(0.087) TCGA-92-7340-01 6 52761683 52761683 A G GSTA3 Missense_Mutation p.F197S 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-92-7340-01 6 55300375 55300375 C T HMGCLL1 3'UTR 0.12 TCGA-92-7340-01 6 56366338 56366338 C A DST Nonsense_Mutation p.E3951* 0.41 TCGA-92-7340-01 6 6174907 6174907 T C F13A1 Silent p.T551T 0.12 TCGA-92-7340-01 6 62611243 62611243 G T KHDRBS2 Missense_Mutation p.R173S 0.08 tolerated(0.08) probably_damaging(0.924) TCGA-92-7340-01 6 70064151 70064151 G C BAI3 Missense_Mutation p.L1162F 0.18 deleterious(0) possibly_damaging(0.454) TCGA-92-7340-01 6 7590554 7590554 G C SNRNP48 Missense_Mutation p.V22L 0.13 tolerated(0.33) possibly_damaging(0.624) TCGA-92-7340-01 6 88049872 88049872 A T SMIM8 Silent p.S58S 0.29 TCGA-92-7340-01 6 97246401 97246401 G T GPR63 Silent p.R403R 0.17 TCGA-92-7340-01 6 99771362 99771362 T C FAXC Missense_Mutation p.M261V 0.14 tolerated(0.27) benign(0.001) TCGA-92-7340-01 7 100175534 100175534 G A LRCH4 Missense_Mutation p.S317L 0.13 tolerated(0.18) benign(0.164) TCGA-92-7340-01 7 100205733 100205733 G A PCOLCE 3'UTR 0.06 TCGA-92-7340-01 7 100607949 100607949 C G MUC3A Intron 0.14 TCGA-92-7340-01 7 101063272 101063272 A T COL26A1 Missense_Mutation p.H58L 0.57 deleterious(0.01) possibly_damaging(0.674) TCGA-92-7340-01 7 106508684 106508684 C G PIK3CG Silent p.R226R 0.13 TCGA-92-7340-01 7 117171067 117171067 C T CFTR Missense_Mutation p.L130F 0.08 deleterious(0.01) possibly_damaging(0.685) TCGA-92-7340-01 7 134849697 134849697 G A TMEM140 Missense_Mutation p.M168I 0.07 tolerated(0.17) benign(0.002) TCGA-92-7340-01 7 137284612 137284612 G T DGKI Missense_Mutation p.P403T 0.33 deleterious(0) probably_damaging(1) TCGA-92-7340-01 7 141727015 141727015 A G MGAM Silent p.Q361Q 0.11 TCGA-92-7340-01 7 142568564 142568564 G A EPHB6 Silent p.L991L 0.16 TCGA-92-7340-01 7 142573258 142573258 G C TRPV6 Missense_Mutation p.P362R 0.06 tolerated(0.09) benign(0.056) TCGA-92-7340-01 7 143657740 143657740 T - OR2F1 Frame_Shift_Del p.L226Qfs*56 0.23 TCGA-92-7340-01 7 149129716 149129716 C T ZNF777 Missense_Mutation p.M549I 0.23 tolerated(0.3) benign(0.018) TCGA-92-7340-01 7 150972282 150972282 C T SMARCD3 5'UTR 0.22 TCGA-92-7340-01 7 151699846 151699846 T C GALNTL5 Missense_Mutation p.W236R 0.22 deleterious(0) probably_damaging(1) TCGA-92-7340-01 7 21882295 21882295 G A DNAH11 Missense_Mutation p.E3616K 0.26 benign(0.015) TCGA-92-7340-01 7 22184680 22184680 A G RAPGEF5 Missense_Mutation p.F570S 0.10 deleterious(0) possibly_damaging(0.887) TCGA-92-7340-01 7 27238839 27238839 G A HOXA13 Silent p.N286N 0.17 TCGA-92-7340-01 7 31904584 31904584 T C PDE1C Missense_Mutation p.H301R 0.16 deleterious(0) probably_damaging(1) TCGA-92-7340-01 7 32209472 32209472 C A PDE1C Missense_Mutation p.R78L 0.09 tolerated(0.17) probably_damaging(0.987) TCGA-92-7340-01 7 35006578 35006578 T C DPY19L1 Silent p.A267A 0.09 TCGA-92-7340-01 7 37905167 37905167 C G NME8 Missense_Mutation p.T190R 0.14 tolerated(1) benign(0.002) TCGA-92-7340-01 7 43484869 43484869 G T HECW1 Missense_Mutation p.A700S 0.11 tolerated_low_confidence(0.55) benign(0.003) TCGA-92-7340-01 7 6731582 6731582 C A ZNF12 Missense_Mutation p.G331W 0.13 deleterious(0) probably_damaging(1) TCGA-92-7340-01 7 72242449 72242449 G C TYW1B Silent p.L314L 0.33 TCGA-92-7340-01 7 82544651 82544651 T G PCLO Silent p.S4217S 0.34 TCGA-92-7340-01 7 87005024 87005024 C T CROT Nonsense_Mutation p.R273* 0.08 TCGA-92-7340-01 7 89789178 89789178 G A STEAP1 Missense_Mutation p.D26N 0.30 tolerated_low_confidence(0.47) benign(0.036) TCGA-92-7340-01 7 89903353 89903353 G T C7orf63 Missense_Mutation p.D305Y 0.42 deleterious(0) probably_damaging(0.973) TCGA-92-7340-01 7 91631386 91631386 C G AKAP9 Missense_Mutation p.L719V 0.20 probably_damaging(0.982) TCGA-92-7340-01 7 935040 935040 G A GET4 Missense_Mutation p.S322N 0.14 tolerated(0.08) possibly_damaging(0.581) TCGA-92-7340-01 7 95125226 95125226 G A ASB4 Missense_Mutation p.C115Y 0.15 deleterious(0) probably_damaging(0.997) TCGA-92-7340-01 8 101016307 101016307 C A RGS22 Missense_Mutation p.G825V 0.37 tolerated(0.07) benign(0.319) TCGA-92-7340-01 8 110131709 110131709 G A TRHR 3'UTR 0.26 TCGA-92-7340-01 8 113256694 113256694 A G CSMD3 Missense_Mutation p.L3444S 0.22 deleterious(0) possibly_damaging(0.908) TCGA-92-7340-01 8 113702237 113702237 T A CSMD3 Missense_Mutation p.Y672F 0.11 tolerated(0.16) probably_damaging(0.999) TCGA-92-7340-01 8 116599359 116599359 C A TRPS1 Missense_Mutation p.G857C 0.12 deleterious_low_confidence(0) possibly_damaging(0.845) TCGA-92-7340-01 8 116599360 116599360 A G TRPS1 Silent p.Y856Y 0.10 TCGA-92-7340-01 8 124705463 124705463 G A ANXA13 Nonsense_Mutation p.R247* 0.19 TCGA-92-7340-01 8 126044624 126044624 C T KIAA0196 Missense_Mutation p.R1065Q 0.41 tolerated(0.07) benign(0.302) TCGA-92-7340-01 8 133925289 133925289 C A TG Intron 0.14 TCGA-92-7340-01 8 13947915 13947915 C A SGCZ 3'UTR 0.12 TCGA-92-7340-01 8 26365118 26365118 G C PNMA2 3'UTR 0.16 TCGA-92-7340-01 8 27516764 27516764 C A SCARA3 Silent p.T359T 0.25 TCGA-92-7340-01 8 55541764 55541764 C A RP1 Silent p.T1774T 0.13 TCGA-92-7340-01 8 68115456 68115456 C T ARFGEF1 Missense_Mutation p.D1664N 0.26 tolerated(0.07) benign(0.005) TCGA-92-7340-01 8 69143676 69143676 G A PREX2 3'UTR 0.23 TCGA-92-7340-01 8 82583250 82583250 C A IMPA1 Missense_Mutation p.G223C 0.21 deleterious(0) probably_damaging(0.999) TCGA-92-7340-01 8 9592553 9592553 G A TNKS Missense_Mutation p.R831K 0.27 tolerated(0.22) possibly_damaging(0.826) TCGA-92-7340-01 8 96281336 96281336 C T C8orf37 Missense_Mutation p.E28K 0.24 tolerated(0.11) benign(0.01) TCGA-92-7340-01 9 103092240 103092240 T G TEX10 Silent p.R488R 0.27 TCGA-92-7340-01 9 113173583 113173583 G - SVEP1 Frame_Shift_Del p.M2137Cfs*17 0.23 TCGA-92-7340-01 9 123725997 123725997 C A C5 Nonsense_Mutation p.E1414* 0.21 TCGA-92-7340-01 9 128419977 128419977 G C MAPKAP1 Missense_Mutation p.L151V 0.34 tolerated(0.33) benign(0.1) TCGA-92-7340-01 9 133512445 133512445 C G FUBP3 3'UTR 0.06 TCGA-92-7340-01 9 140074695 140074695 C T ANAPC2 Missense_Mutation p.E610K 0.11 tolerated(0.18) benign(0.048) TCGA-92-7340-01 9 15744736 15744736 G A CCDC171 Missense_Mutation p.V839M 0.15 deleterious(0) probably_damaging(1) TCGA-92-7340-01 9 20620662 20620662 G A MLLT3 Missense_Mutation p.P62S 0.09 deleterious(0) benign(0.378) TCGA-92-7340-01 9 214811 214811 C T C9orf66 Missense_Mutation p.G196R 0.35 tolerated_low_confidence(0.08) probably_damaging(0.979) TCGA-92-7340-01 9 35802800 35802800 G C NPR2 Missense_Mutation p.K629N 0.45 deleterious(0) probably_damaging(0.968) TCGA-92-7340-01 9 43627872 43627872 C T SPATA31A6 Missense_Mutation p.G272D 0.21 tolerated(0.61) benign(0.191) TCGA-92-7340-01 9 72755149 72755149 C A MAMDC2 Silent p.T361T 0.15 TCGA-92-7340-01 X 100169912 100169912 G A XKRX Silent p.L255L 0.24 TCGA-92-7340-01 X 103220133 103220133 G C TMSB15B Missense_Mutation p.C41S 0.30 tolerated(0.16) benign(0) TCGA-92-7340-01 X 110970057 110970057 A G ALG13 Missense_Mutation p.K584E 0.28 deleterious(0) probably_damaging(0.985) TCGA-92-7340-01 X 11166777 11166777 G A ARHGAP6 Intron 0.08 TCGA-92-7340-01 X 117895208 117895208 G A IL13RA1 Missense_Mutation p.V262I 0.32 tolerated(0.19) benign(0.007) TCGA-92-7340-01 X 120009188 120009188 G T CT47B1 Missense_Mutation p.R113S 0.18 deleterious(0.02) possibly_damaging(0.778) TCGA-92-7340-01 X 12734823 12734823 G A FRMPD4 Missense_Mutation p.E749K 0.24 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-92-7340-01 X 138692496 138692496 C G MCF2 Silent p.G531G 0.30 TCGA-92-7340-01 X 140985360 140985360 C T MAGEC3 Intron 0.21 TCGA-92-7340-01 X 150869085 150869085 G C PRRG3 Silent p.L92L 0.29 TCGA-92-7340-01 X 19443651 19443651 G T MAP3K15 Silent p.V479V 0.39 TCGA-92-7340-01 X 30327241 30327241 G C NR0B1 Silent p.L80L 0.17 TCGA-92-7340-01 X 47836111 47836111 C G ZNF182 Missense_Mutation p.E459Q 0.38 tolerated(0.15) possibly_damaging(0.75) TCGA-92-7340-01 X 49035657 49035657 C A PRICKLE3 Silent p.L169L 0.18 TCGA-92-7340-01 X 52682524 52682524 G C SSX7 5'UTR 0.28 TCGA-92-7340-01 X 54569472 54569472 G A GNL3L Splice_Site p.X130_splice 0.11 TCGA-92-7340-01 X 63410487 63410487 G A AMER1 Missense_Mutation p.R894C 0.27 deleterious(0) probably_damaging(0.989) TCGA-92-7340-01 X 66931342 66931342 G T AR Missense_Mutation p.V662L 0.32 tolerated(0.34) benign(0.018) TCGA-92-7340-01 X 69458123 69458123 C A AWAT1 Silent p.L174L 0.09 TCGA-92-7340-01 X 69496298 69496298 C T ARR3 Missense_Mutation p.P121S 0.05 deleterious(0) probably_damaging(1) TCGA-92-7340-01 X 69719875 69719875 G C DLG3 Missense_Mutation p.Q707H 0.11 deleterious(0.02) possibly_damaging(0.536) TCGA-92-7340-01 X 70147850 70147850 G T SLC7A3 Missense_Mutation p.Q281K 0.62 deleterious(0.03) benign(0.314) TCGA-92-7340-01 X 70147851 70147851 G T SLC7A3 Silent p.P280P 0.62 TCGA-92-7340-01 X 70288019 70288020 GC - SNX12 Frame_Shift_Del p.R46Lfs*5 0.47 TCGA-92-7340-01 X 70339653 70339653 C A MED12 Silent p.R108R 0.57 TCGA-92-7340-01 X 71426268 71426268 C A ERCC6L Missense_Mutation p.E783D 0.58 tolerated(0.12) benign(0.007) TCGA-92-7340-01 X 79278632 79278632 C G TBX22 Missense_Mutation p.S83R 0.22 tolerated(0.37) benign(0.01) TCGA-92-7340-01 X 89177287 89177287 G T TGIF2LX Missense_Mutation p.W68L 0.20 deleterious(0.01) probably_damaging(0.992) TCGA-92-7340-01 X 90690599 90690599 C A PABPC5 Missense_Mutation p.P8H 0.24 deleterious_low_confidence(0.01) benign(0.012) TCGA-92-7340-01 X 91873912 91873912 C A PCDH11X Silent p.S1339S 0.15 TCGA-92-7341-01 10 101590174 101590174 C T ABCC2 Nonsense_Mutation p.R911* 0.07 TCGA-92-7341-01 10 106982977 106982977 C A SORCS3 Silent p.T946T 0.19 TCGA-92-7341-01 10 112266867 112266867 A G DUSP5 Missense_Mutation p.T235A 0.19 tolerated(0.29) benign(0.001) TCGA-92-7341-01 10 115412739 115412739 T A NRAP Silent p.T175T 0.35 TCGA-92-7341-01 10 25465176 25465176 G T GPR158 Missense_Mutation p.S276I 0.22 tolerated(0.15) benign(0.096) TCGA-92-7341-01 10 54530534 54530534 C T MBL2 Missense_Mutation p.R67K 0.24 deleterious(0.02) possibly_damaging(0.708) TCGA-92-7341-01 10 78869930 78869930 C T KCNMA1 Splice_Site p.X377_splice 0.11 TCGA-92-7341-01 10 93242747 93242747 T G HECTD2 Silent p.S245S 0.25 TCGA-92-7341-01 11 103055679 103055679 C G DYNC2H1 Missense_Mutation p.H2178D 0.32 probably_damaging(0.979) TCGA-92-7341-01 11 123756048 123756048 T A TMEM225 Missense_Mutation p.T29S 0.19 deleterious(0.01) benign(0.009) TCGA-92-7341-01 11 124763858 124763858 G A ROBO4 Missense_Mutation p.P468S 0.50 deleterious(0) probably_damaging(0.999) TCGA-92-7341-01 11 1267140 1267140 C A MUC5B Silent p.A3010A 0.43 TCGA-92-7341-01 11 49190783 49190783 C T FOLH1 Missense_Mutation p.G446S 0.30 tolerated(0.46) benign(0.121) TCGA-92-7341-01 11 50003309 50003309 T A OR4C12 Silent p.I243I 0.18 TCGA-92-7341-01 11 55579664 55579664 G C OR5L1 Missense_Mutation p.C241S 0.23 deleterious(0) probably_damaging(1) TCGA-92-7341-01 11 55761895 55761895 C T OR5F1 Silent p.V69V 0.16 TCGA-92-7341-01 11 56185160 56185160 G T OR5R1 Silent p.P183P 0.32 TCGA-92-7341-01 11 613910 613910 T G IRF7 Intron 0.21 TCGA-92-7341-01 11 6190764 6190764 G C OR52B2 Missense_Mutation p.H265D 0.21 deleterious(0) benign(0.09) TCGA-92-7341-01 11 62290578 62290578 C A AHNAK Nonsense_Mutation p.E3771* 0.38 TCGA-92-7341-01 11 6592547 6592547 T C DNHD1 Missense_Mutation p.L4602P 0.22 benign(0.015) TCGA-92-7341-01 11 71850029 71850029 C G FOLR3 Missense_Mutation p.P107A 0.15 tolerated(0.16) possibly_damaging(0.539) TCGA-92-7341-01 11 7846872 7846872 T A OR5P3 Silent p.I216I 0.53 TCGA-92-7341-01 11 89403624 89403624 C A FOLH1B RNA 0.18 TCGA-92-7341-01 11 92600062 92600062 G A FAT3 Silent p.V3938V 0.30 TCGA-92-7341-01 12 101598309 101598309 A G SLC5A8 Missense_Mutation p.L129P 0.45 deleterious(0) probably_damaging(0.948) TCGA-92-7341-01 12 102542292 102542292 A G PARPBP Intron 0.42 TCGA-92-7341-01 12 122684846 122684846 C T LRRC43 Missense_Mutation p.A487V 0.08 deleterious(0) benign(0.228) TCGA-92-7341-01 12 28122849 28122849 A G PTHLH Intron 0.22 TCGA-92-7341-01 12 29446145 29446145 G A FAR2 Intron 0.62 TCGA-92-7341-01 12 40037610 40037610 A G C12orf40 Silent p.S31S 0.54 TCGA-92-7341-01 12 47629785 47629785 C A PCED1B Silent p.L313L 0.09 TCGA-92-7341-01 12 53170982 53170982 A G KRT76 Missense_Mutation p.C32R 0.42 tolerated(0.34) unknown(0) TCGA-92-7341-01 12 56995756 56995756 G C BAZ2A Silent p.P1217P 0.30 TCGA-92-7341-01 12 56995758 56995758 G C BAZ2A Missense_Mutation p.P1217A 0.36 tolerated(0.82) benign(0.02) TCGA-92-7341-01 12 64815114 64815114 A G XPOT Missense_Mutation p.I315V 0.21 tolerated(0.45) benign(0) TCGA-92-7341-01 12 76454023 76454023 G C NAP1L1 Silent p.L81L 0.35 TCGA-92-7341-01 12 83526048 83526048 G T TMTC2 Missense_Mutation p.K797N 0.18 deleterious(0) benign(0.102) TCGA-92-7341-01 13 46425660 46425660 G C SIAH3 Silent p.V35V 0.05 TCGA-92-7341-01 13 49281857 49281857 C A CYSLTR2 Missense_Mutation p.P302T 0.53 deleterious(0) probably_damaging(1) TCGA-92-7341-01 13 53421510 53421510 G A PCDH8 Silent p.I354I 0.20 TCGA-92-7341-01 13 75898518 75898518 G A TBC1D4 Missense_Mutation p.R685C 0.12 deleterious(0.03) possibly_damaging(0.772) TCGA-92-7341-01 13 99099048 99099048 G A FARP1 Silent p.A1011A 0.57 TCGA-92-7341-01 14 104202528 104202528 T G PPP1R13B Missense_Mutation p.K1015Q 0.64 deleterious(0) possibly_damaging(0.481) TCGA-92-7341-01 14 105834479 105834479 G A PACS2 Missense_Mutation p.G219R 0.31 tolerated(0.17) probably_damaging(0.94) TCGA-92-7341-01 14 23818534 23818534 C A SLC22A17 Missense_Mutation p.R158L 0.34 deleterious(0) probably_damaging(0.997) TCGA-92-7341-01 14 52781631 52781631 C A PTGER2 Missense_Mutation p.A122D 0.52 deleterious(0) probably_damaging(0.999) TCGA-92-7341-01 14 70515660 70515660 G T SLC8A3 Missense_Mutation p.A744D 0.59 deleterious(0) probably_damaging(1) TCGA-92-7341-01 14 90429811 90429811 C T TDP1 Missense_Mutation p.A118V 0.37 tolerated_low_confidence(0.24) benign(0.002) TCGA-92-7341-01 15 25219583 25219583 T G SNRPN 5'UTR 0.27 TCGA-92-7341-01 15 34356081 34356081 A C CHRM5 Missense_Mutation p.D388A 0.34 tolerated(0.8) benign(0.174) TCGA-92-7341-01 15 74628216 74628216 C T CCDC33 Intron 0.30 TCGA-92-7341-01 15 79298686 79298686 A T RASGRF1 Missense_Mutation p.S652R 0.36 deleterious(0) possibly_damaging(0.847) TCGA-92-7341-01 15 85164316 85164316 A G ZSCAN2 Missense_Mutation p.Q297R 0.42 tolerated(0.07) benign(0.017) TCGA-92-7341-01 15 90760792 90760792 C T SEMA4B Silent p.L93L 0.24 TCGA-92-7341-01 16 1245993 1245993 C T CACNA1H Missense_Mutation p.R205W 0.28 deleterious(0) probably_damaging(0.999) TCGA-92-7341-01 16 31383944 31383944 C T ITGAX Silent p.A773A 0.13 TCGA-92-7341-01 16 32893960 32893960 G T RP11-989E6.3 5'Flank 0.24 TCGA-92-7341-01 16 69364051 69364051 C T PDF Silent p.A141A 0.60 TCGA-92-7341-01 16 69400835 69400835 G A TERF2 Silent p.V363V 0.27 TCGA-92-7341-01 16 69725902 69725902 A G NFAT5 Missense_Mutation p.Q725R 0.40 benign(0.085) TCGA-92-7341-01 16 71113802 71113802 C G HYDIN Missense_Mutation p.G575A 0.12 probably_damaging(0.992) TCGA-92-7341-01 16 72162580 72162580 T A PMFBP1 Missense_Mutation p.Q688H 0.32 tolerated(0.07) possibly_damaging(0.807) TCGA-92-7341-01 16 82131894 82131894 G A HSD17B2 Silent p.T339T 0.20 TCGA-92-7341-01 16 89349676 89349676 G A ANKRD11 Missense_Mutation p.P1092S 0.35 benign(0.026) TCGA-92-7341-01 17 16833712 16833712 G A TBC1D27 RNA 0.36 TCGA-92-7341-01 17 1715376 1715376 A G SMYD4 Silent p.S56S 0.05 TCGA-92-7341-01 17 40280358 40280358 C T RAB5C Missense_Mutation p.R154K 0.14 tolerated(0.19) benign(0.02) TCGA-92-7341-01 17 40818446 40818446 C T TUBG2 Missense_Mutation p.P368S 0.35 tolerated(0.23) benign(0.002) TCGA-92-7341-01 17 47781561 47781561 T C SLC35B1 Missense_Mutation p.T186A 0.26 deleterious(0) probably_damaging(0.992) TCGA-92-7341-01 17 53155504 53155504 G T STXBP4 Missense_Mutation p.M418I 0.34 tolerated(0.67) benign(0.002) TCGA-92-7341-01 17 53851103 53851103 C T PCTP Missense_Mutation p.R120W 0.26 tolerated(0.14) benign(0.013) TCGA-92-7341-01 17 62018158 62018158 G C SCN4A Silent p.R1828R 0.05 TCGA-92-7341-01 18 29210924 29210924 A C B4GALT6 Nonsense_Mutation p.Y258* 0.31 TCGA-92-7341-01 19 14854593 14854593 C A EMR2 Missense_Mutation p.M729I 0.33 tolerated(0.06) possibly_damaging(0.77) TCGA-92-7341-01 19 15739341 15739341 G A CYP4F8 Intron 0.35 TCGA-92-7341-01 19 17327051 17327051 G A USE1 Missense_Mutation p.R102Q 0.38 tolerated(0.07) benign(0.232) TCGA-92-7341-01 19 19030148 19030148 G C COPE Missense_Mutation p.P4A 0.40 tolerated_low_confidence(0.1) unknown(0) TCGA-92-7341-01 19 22156296 22156296 C A ZNF208 Nonsense_Mutation p.E514* 0.27 TCGA-92-7341-01 19 33149857 33149857 G A ANKRD27 Missense_Mutation p.P22L 0.06 deleterious(0) possibly_damaging(0.713) TCGA-92-7341-01 19 36050842 36050842 C A ATP4A Silent p.A307A 0.51 TCGA-92-7341-01 19 36362529 36362529 G T APLP1 Missense_Mutation p.G185C 0.22 deleterious(0) probably_damaging(0.999) TCGA-92-7341-01 19 38976717 38976717 C T RYR1 Missense_Mutation p.R1808W 0.07 probably_damaging(0.948) TCGA-92-7341-01 19 42557796 42557796 C T GRIK5 Silent p.S409S 0.11 TCGA-92-7341-01 19 48800265 48800265 C A CCDC114 Missense_Mutation p.G661C 0.58 deleterious(0.02) probably_damaging(0.991) TCGA-92-7341-01 19 49244662 49244662 C T IZUMO1 Silent p.S276S 0.60 TCGA-92-7341-01 19 50128113 50128113 A G PRR12 Missense_Mutation p.T1912A 0.61 unknown(0) TCGA-92-7341-01 19 50335233 50335233 C T MED25 Missense_Mutation p.T424M 0.15 deleterious(0) possibly_damaging(0.522) TCGA-92-7341-01 19 52448634 52448634 A T ZNF613 Missense_Mutation p.N500Y 0.68 deleterious(0.02) possibly_damaging(0.857) TCGA-92-7341-01 19 7623822 7623822 G A PNPLA6 Missense_Mutation p.D1172N 0.48 deleterious(0) probably_damaging(0.998) TCGA-92-7341-01 1 152281528 152281528 G T FLG Missense_Mutation p.S1945Y 0.06 possibly_damaging(0.608) TCGA-92-7341-01 1 152281529 152281529 A G FLG Missense_Mutation p.S1945P 0.07 benign(0.307) TCGA-92-7341-01 1 153945541 153945541 G C CREB3L4 Missense_Mutation p.G244R 0.56 deleterious(0) probably_damaging(1) TCGA-92-7341-01 1 157522273 157522273 G C FCRL5 5'UTR 0.17 TCGA-92-7341-01 1 167368499 167368499 G T POU2F1 Missense_Mutation p.W449L 0.24 deleterious(0) unknown(0) TCGA-92-7341-01 1 175096089 175096089 A G TNN Splice_Site p.X972_splice 0.30 TCGA-92-7341-01 1 180849327 180849327 C G XPR1 Missense_Mutation p.L642V 0.36 deleterious(0.02) possibly_damaging(0.463) TCGA-92-7341-01 1 198248151 198248151 C T NEK7 Silent p.G183G 0.08 TCGA-92-7341-01 1 206649643 206649643 G T IKBKE Missense_Mutation p.A160S 0.25 deleterious(0) probably_damaging(1) TCGA-92-7341-01 1 207200918 207200918 G A C1orf116 Missense_Mutation p.A9V 0.12 tolerated(0.18) benign(0.176) TCGA-92-7341-01 1 210761309 210761309 A T HHAT Missense_Mutation p.T372S 0.40 deleterious(0.03) possibly_damaging(0.557) TCGA-92-7341-01 1 235956823 235956823 G A LYST Silent p.L1366L 0.22 TCGA-92-7341-01 1 247835894 247835894 G A OR13G1 Silent p.V150V 0.20 TCGA-92-7341-01 1 248004823 248004823 T A OR11L1 Missense_Mutation p.I126F 0.35 deleterious(0.03) benign(0.024) TCGA-92-7341-01 1 248367105 248367105 T A OR2M3 Missense_Mutation p.L246M 0.35 tolerated(0.76) benign(0.003) TCGA-92-7341-01 1 248636909 248636909 G T OR2T3 Missense_Mutation p.M86I 0.20 deleterious(0.03) benign(0.012) TCGA-92-7341-01 1 248652116 248652116 C A OR2T5 Missense_Mutation p.A76E 0.37 deleterious(0) benign(0.031) TCGA-92-7341-01 1 8390629 8390629 C T SLC45A1 Missense_Mutation p.T359M 0.15 tolerated(0.06) probably_damaging(1) TCGA-92-7341-01 20 13763614 13763614 C T ESF1 Missense_Mutation p.R58H 0.34 deleterious(0.01) benign(0.005) TCGA-92-7341-01 20 13775499 13775499 A G NDUFAF5 Missense_Mutation p.T131A 0.27 tolerated(0.57) benign(0.155) TCGA-92-7341-01 20 139719 139719 G A DEFB127 3'UTR 0.25 TCGA-92-7341-01 20 31889145 31889145 G T BPIFB1 Missense_Mutation p.S285I 0.08 deleterious(0) benign(0.231) TCGA-92-7341-01 20 34458981 34458981 G T PHF20 Missense_Mutation p.D343Y 0.53 deleterious(0) benign(0.252) TCGA-92-7341-01 20 43752429 43752429 G T WFDC12 3'UTR 0.48 TCGA-92-7341-01 20 5282953 5282953 G A PROKR2 Silent p.I296I 0.22 TCGA-92-7341-01 20 62366557 62366557 G T ZGPAT Silent p.V366V 0.25 TCGA-92-7341-01 21 9907240 9907240 C - TEKT4P2 RNA 0.30 TCGA-92-7341-01 22 21141291 21141291 C T SERPIND1 Silent p.I479I 0.31 TCGA-92-7341-01 22 22319730 22319730 C T TOP3B Silent p.R290R 0.27 TCGA-92-7341-01 22 28292611 28292611 C A PITPNB Nonsense_Mutation p.E101* 0.22 TCGA-92-7341-01 22 41645405 41645405 C A RANGAP1 Silent p.A541A 0.38 TCGA-92-7341-01 2 107040005 107040005 A G RGPD3 Missense_Mutation p.L1473S 0.30 deleterious(0.05) probably_damaging(0.998) TCGA-92-7341-01 2 128757641 128757641 G A SAP130 Missense_Mutation p.A392V 0.11 tolerated_low_confidence(0.54) benign(0.138) TCGA-92-7341-01 2 131688603 131688603 G T ARHGEF4 Missense_Mutation p.A25S 0.17 tolerated_low_confidence(0.16) benign(0.039) TCGA-92-7341-01 2 166740493 166740493 C T TTC21B Silent p.T1165T 0.28 TCGA-92-7341-01 2 169985160 169985160 A G LRP2 3'UTR 0.25 TCGA-92-7341-01 2 176948356 176948356 C T EVX2 Missense_Mutation p.S50N 0.23 deleterious(0.02) benign(0.149) TCGA-92-7341-01 2 178098960 178098960 C G NFE2L2 Missense_Mutation p.D29H 0.22 deleterious(0) probably_damaging(1) TCGA-92-7341-01 2 179447097 179447097 C T TTN Missense_Mutation p.R22029H 0.13 TCGA-92-7341-01 2 179581993 179581993 C - TTN Frame_Shift_Del p.A8490Pfs*15 0.23 TCGA-92-7341-01 2 196749451 196749451 C T DNAH7 Missense_Mutation p.R1874Q 0.17 deleterious(0) possibly_damaging(0.673) TCGA-92-7341-01 2 202430580 202430580 T C ALS2CR11 Silent p.P283P 0.33 TCGA-92-7341-01 2 233274352 233274352 G A ALPPL2 Missense_Mutation p.A457T 0.46 deleterious(0.01) possibly_damaging(0.708) TCGA-92-7341-01 2 242051737 242051737 C A PASK Missense_Mutation p.A1158S 0.50 deleterious(0) probably_damaging(0.989) TCGA-92-7341-01 2 48915217 48915217 G A LHCGR Silent p.I573I 0.36 TCGA-92-7341-01 2 61192223 61192223 T G PUS10 Silent p.P231P 0.45 TCGA-92-7341-01 2 61416141 61416141 T - USP34 Frame_Shift_Del p.I3313Ffs*8 0.27 TCGA-92-7341-01 2 62106093 62106093 T C CCT4 Missense_Mutation p.I145V 0.27 tolerated(1) benign(0.009) TCGA-92-7341-01 2 70315686 70315698 TGGGCAAGTTTGG - PCBP1 Frame_Shift_Del p.W271Mfs*16 0.19 TCGA-92-7341-01 2 73868613 73868613 C A NAT8 Missense_Mutation p.G48V 0.20 tolerated(0.07) possibly_damaging(0.84) TCGA-92-7341-01 2 95815147 95815147 T C ZNF514 Silent p.Q361Q 0.28 TCGA-92-7341-01 2 98373669 98373669 C A TMEM131 Missense_Mutation p.A1849S 0.29 tolerated_low_confidence(0.58) benign(0.001) TCGA-92-7341-01 3 100489679 100489679 T G ABI3BP Missense_Mutation p.N839T 0.04 tolerated(0.07) probably_damaging(0.982) TCGA-92-7341-01 3 108572760 108572760 T C TRAT1 3'UTR 0.15 TCGA-92-7341-01 3 111603772 111603772 G A PHLDB2 Missense_Mutation p.R283Q 0.24 deleterious(0.03) benign(0.197) TCGA-92-7341-01 3 12861648 12861648 A T CAND2 Missense_Mutation p.H1003L 0.58 tolerated(0.07) benign(0.027) TCGA-92-7341-01 3 14861996 14861996 C T FGD5 Missense_Mutation p.A473V 0.16 tolerated(0.57) benign(0) TCGA-92-7341-01 3 151055808 151055808 G C P2RY12 Missense_Mutation p.L276V 0.25 deleterious(0.01) probably_damaging(0.914) TCGA-92-7341-01 3 157081412 157081412 C G VEPH1 Silent p.L492L 0.18 TCGA-92-7341-01 3 179123098 179123098 G A GNB4 Missense_Mutation p.H266Y 0.07 tolerated(0.19) benign(0.062) TCGA-92-7341-01 3 184035169 184035169 G A EIF4G1 Missense_Mutation p.A77T 0.13 tolerated(0.48) probably_damaging(0.986) TCGA-92-7341-01 3 194168669 194168669 T C ATP13A3 Missense_Mutation p.Y407C 0.58 deleterious(0) probably_damaging(0.999) TCGA-92-7341-01 3 194947446 194947448 ATG - XXYLT1 In_Frame_Del p.I214del 0.21 TCGA-92-7341-01 3 20113851 20113851 C T KAT2B Silent p.G110G 0.45 TCGA-92-7341-01 3 47452378 47452378 C A PTPN23 Missense_Mutation p.H1030Q 0.07 benign(0.045) TCGA-92-7341-01 3 47899002 47899002 C A MAP4 Missense_Mutation p.V1023F 0.60 deleterious(0) probably_damaging(1) TCGA-92-7341-01 4 122250816 122250816 C T QRFPR Missense_Mutation p.V317M 0.33 deleterious(0) possibly_damaging(0.903) TCGA-92-7341-01 4 122250818 122250818 A G QRFPR Missense_Mutation p.I316T 0.40 deleterious(0.04) benign(0.1) TCGA-92-7341-01 4 123188034 123188034 T C KIAA1109 Missense_Mutation p.S2472P 0.56 probably_damaging(0.993) TCGA-92-7341-01 4 16168360 16168360 T C TAPT1 Missense_Mutation p.Y457C 0.62 deleterious(0.01) probably_damaging(0.983) TCGA-92-7341-01 4 183658208 183658208 A G TENM3 Missense_Mutation p.Y1072C 0.72 deleterious(0) probably_damaging(0.926) TCGA-92-7341-01 4 183721167 183721167 G C TENM3 Missense_Mutation p.G2588A 1.00 deleterious(0.01) probably_damaging(0.91) TCGA-92-7341-01 4 187531095 187531095 C A FAT1 Nonsense_Mutation p.G3310* 0.72 TCGA-92-7341-01 4 49005767 49005767 C T CWH43 Missense_Mutation p.A273V 0.47 tolerated(0.5) benign(0.009) TCGA-92-7341-01 4 69964382 69964382 C T UGT2B7 Silent p.C282C 0.40 TCGA-92-7341-01 5 132161683 132161683 C T SHROOM1 Silent p.P50P 0.38 TCGA-92-7341-01 5 134785424 134785424 G A TIFAB Missense_Mutation p.A69V 0.34 tolerated(0.26) benign(0.033) TCGA-92-7341-01 5 139743750 139743750 C T SLC4A9 Missense_Mutation p.R480C 0.23 deleterious(0) probably_damaging(0.982) TCGA-92-7341-01 5 140235643 140235643 A T PCDHA10 Nonsense_Mutation p.R4* 0.36 TCGA-92-7341-01 5 140250719 140250719 C G PCDHA11 Silent p.A677A 0.22 TCGA-92-7341-01 5 140734931 140734931 C T PCDHGA4 Missense_Mutation p.A55V 0.38 deleterious_low_confidence(0) benign(0.166) TCGA-92-7341-01 5 141050159 141050159 C T ARAP3 Missense_Mutation p.R676H 0.06 tolerated(0.38) benign(0.008) TCGA-92-7341-01 5 161302619 161302619 C T GABRA1 Missense_Mutation p.A177V 0.09 tolerated(0.3) benign(0.005) TCGA-92-7341-01 5 167643919 167643919 G A TENM2 Missense_Mutation p.V1409I 0.28 tolerated(1) benign(0.014) TCGA-92-7341-01 5 172362285 172362285 G A ERGIC1 Missense_Mutation p.R246Q 0.23 deleterious(0.02) probably_damaging(0.954) TCGA-92-7341-01 5 177574628 177574628 G A RMND5B Missense_Mutation p.E319K 0.20 deleterious(0) probably_damaging(0.931) TCGA-92-7341-01 5 177651538 177651538 G A PHYKPL Missense_Mutation p.P177S 0.36 tolerated(0.39) benign(0.102) TCGA-92-7341-01 5 180218926 180218926 A C MGAT1 Missense_Mutation p.L349R 0.28 probably_damaging(0.999) TCGA-92-7341-01 5 40853415 40853415 T C CARD6 Missense_Mutation p.F661L 0.06 tolerated(0.16) benign(0.206) TCGA-92-7341-01 5 40853828 40853828 A T CARD6 Missense_Mutation p.R798S 0.06 tolerated(0.14) benign(0.045) TCGA-92-7341-01 5 79854680 79854680 C T ANKRD34B Missense_Mutation p.G387S 0.32 tolerated(0.95) benign(0.004) TCGA-92-7341-01 6 135271098 135271098 T C ALDH8A1 Missense_Mutation p.T32A 0.42 deleterious(0) possibly_damaging(0.803) TCGA-92-7341-01 6 149983094 149983094 T G LATS1 Missense_Mutation p.E1055A 0.51 tolerated(0.67) benign(0.045) TCGA-92-7341-01 6 32818213 32818213 G A TAP1 Nonsense_Mutation p.R438* 0.13 TCGA-92-7341-01 6 73110325 73110325 C T RIMS1 Missense_Mutation p.S1663L 0.43 deleterious(0) probably_damaging(0.999) TCGA-92-7341-01 7 100086600 100086600 G A NYAP1 Missense_Mutation p.R419Q 0.10 tolerated(0.05) possibly_damaging(0.806) TCGA-92-7341-01 7 100849494 100849494 C A PLOD3 3'UTR 0.38 TCGA-92-7341-01 7 105615289 105615289 G T CDHR3 Splice_Site p.X16_splice 0.33 TCGA-92-7341-01 7 11676292 11676292 T C THSD7A Missense_Mutation p.K163E 0.34 tolerated(0.05) benign(0.271) TCGA-92-7341-01 7 121651292 121651292 C T PTPRZ1 Missense_Mutation p.S731F 0.05 deleterious_low_confidence(0.04) probably_damaging(0.998) TCGA-92-7341-01 7 128041080 128041080 T C IMPDH1 Missense_Mutation p.I165V 0.33 tolerated(0.07) benign(0.327) TCGA-92-7341-01 7 130023270 130023270 C T CPA1 Silent p.I174I 0.07 TCGA-92-7341-01 7 27147992 27147992 G T HOXA3 Missense_Mutation p.Q292K 0.33 tolerated(0.06) benign(0.039) TCGA-92-7341-01 7 27204776 27204776 C T HOXA9 Missense_Mutation p.A101T 0.28 tolerated(0.26) benign(0.245) TCGA-92-7341-01 7 27205023 27205023 G A HOXA9 Silent p.G18G 0.42 TCGA-92-7341-01 7 30100523 30100523 G T PLEKHA8 Missense_Mutation p.A355S 0.38 deleterious(0.03) benign(0.438) TCGA-92-7341-01 7 31378438 31378438 T C NEUROD6 Missense_Mutation p.I149V 0.28 tolerated(0.06) benign(0.141) TCGA-92-7341-01 7 4056842 4056842 G C SDK1 Silent p.R820R 0.23 TCGA-92-7341-01 7 44180660 44180660 G T MYL7 Missense_Mutation p.A6E 0.46 deleterious(0.01) possibly_damaging(0.827) TCGA-92-7341-01 7 45005453 45005453 G T MYO1G Silent p.R722R 0.37 TCGA-92-7341-01 7 7612374 7612374 A T MIOS Missense_Mutation p.T90S 0.31 tolerated(0.32) benign(0.038) TCGA-92-7341-01 7 77221515 77221515 G C PTPN12 Missense_Mutation p.R145P 0.27 deleterious(0) benign(0.172) TCGA-92-7341-01 8 52325765 52325765 C A PXDNL Missense_Mutation p.A617S 0.38 deleterious(0) possibly_damaging(0.829) TCGA-92-7341-01 9 100308471 100308471 C T TMOD1 Missense_Mutation p.A42V 0.31 tolerated(0.16) possibly_damaging(0.458) TCGA-92-7341-01 9 116999984 116999984 C T COL27A1 Missense_Mutation p.P906S 0.23 unknown(0) TCGA-92-7341-01 9 133779469 133779469 C T FIBCD1 Silent p.P456P 0.26 TCGA-92-7341-01 9 38396457 38396457 A G ALDH1B1 Missense_Mutation p.I238V 0.52 tolerated(1) benign(0) TCGA-92-7341-01 9 4286115 4286115 C A GLIS3 Missense_Mutation p.G104V 0.41 tolerated(0.2) possibly_damaging(0.607) TCGA-92-7341-01 9 4286116 4286116 C A GLIS3 Nonsense_Mutation p.G104* 0.41 TCGA-92-7341-01 X 101138653 101138653 C T ZMAT1 Silent p.E582E 0.65 TCGA-92-7341-01 X 108684635 108684635 G A GUCY2F Missense_Mutation p.S549F 0.57 deleterious(0) probably_damaging(0.915) TCGA-92-7341-01 X 15593802 15593802 A G ACE2 Missense_Mutation p.W477R 0.47 deleterious(0) probably_damaging(0.995) TCGA-92-7341-01 X 17750513 17750513 A G NHS Missense_Mutation p.I1608V 0.10 deleterious(0) probably_damaging(0.99) TCGA-92-7341-01 X 37027252 37027252 A G FAM47C Missense_Mutation p.S257G 0.68 tolerated(0.28) benign(0.087) TCGA-92-7341-01 X 37028589 37028589 C A FAM47C Silent p.L702L 0.60 TCGA-92-7341-01 X 37028590 37028590 C A FAM47C Missense_Mutation p.H703N 0.58 tolerated(0.37) benign(0.138) TCGA-92-7341-01 X 50125603 50125603 T C DGKK Splice_Site 0.63 TCGA-92-7341-01 X 73066089 73066089 G A XIST RNA 0.53 TCGA-92-7341-01 X 73961917 73961917 T A KIAA2022 Silent p.S825S 0.60 TCGA-92-7341-01 X 88008966 88008966 C T CPXCR1 Missense_Mutation p.P184L 0.53 deleterious(0.03) probably_damaging(0.958) TCGA-92-8063-01 10 102765303 102765303 C T LZTS2 Missense_Mutation p.A386V 0.29 tolerated(0.07) benign(0.184) TCGA-92-8063-01 10 105795130 105795130 C G COL17A1 Silent p.G1170G 0.25 TCGA-92-8063-01 10 106927033 106927033 C A SORCS3 Nonsense_Mutation p.Y609* 0.14 TCGA-92-8063-01 10 118425128 118425128 G - C10orf82 Frame_Shift_Del p.L89* 0.19 TCGA-92-8063-01 10 124008654 124008654 G C TACC2 Silent p.A2881A 0.37 TCGA-92-8063-01 10 129847895 129847895 G A PTPRE Missense_Mutation p.A129T 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-92-8063-01 10 1313197 1313197 G A ADARB2 Missense_Mutation p.P382L 0.32 tolerated(0.06) benign(0.08) TCGA-92-8063-01 10 133058575 133058575 T A TCERG1L Missense_Mutation p.H268L 0.34 tolerated(0.07) possibly_damaging(0.587) TCGA-92-8063-01 10 17089436 17089436 A G CUBN Silent p.Y1102Y 0.40 TCGA-92-8063-01 10 34759010 34759010 T A PARD3 Intron 0.45 TCGA-92-8063-01 10 395395 395395 C A DIP2C Splice_Site p.X996_splice 0.42 TCGA-92-8063-01 10 43597792 43597792 C A RET Missense_Mutation p.R114S 0.26 tolerated_low_confidence(0.47) benign(0.015) TCGA-92-8063-01 10 45799873 45799873 G T OR13A1 5'UTR 0.27 TCGA-92-8063-01 10 50531059 50531059 C T C10orf71 Missense_Mutation p.R157C 0.33 tolerated(0.2) benign(0.023) TCGA-92-8063-01 10 50828602 50828602 C G CHAT Missense_Mutation p.S214C 0.24 deleterious(0.01) probably_damaging(1) TCGA-92-8063-01 10 50945871 50945871 G A OGDHL Missense_Mutation p.H851Y 0.19 deleterious(0) probably_damaging(0.962) TCGA-92-8063-01 10 51889622 51889622 G T FAM21A Missense_Mutation p.E1177D 0.23 tolerated(0.63) benign(0.071) TCGA-92-8063-01 10 52003084 52003084 C A ASAH2 Missense_Mutation p.A130S 0.25 tolerated(0.32) possibly_damaging(0.629) TCGA-92-8063-01 10 55569009 55569009 C G PCDH15 Missense_Mutation p.E535Q 0.14 deleterious_low_confidence(0) unknown(0) TCGA-92-8063-01 10 55569093 55569093 G A PCDH15 Missense_Mutation p.R507C 0.29 deleterious_low_confidence(0) unknown(0) TCGA-92-8063-01 10 58120144 58120144 C A ZWINT Missense_Mutation p.E14D 0.25 deleterious(0.02) unknown(0) TCGA-92-8063-01 10 63810709 63810709 A T ARID5B Missense_Mutation p.S266C 0.20 deleterious(0.01) probably_damaging(0.987) TCGA-92-8063-01 10 64136114 64136114 A G ZNF365 Silent p.E54E 0.33 TCGA-92-8063-01 10 73450341 73450341 G A CDH23 Missense_Mutation p.G318R 0.22 deleterious(0) probably_damaging(1) TCGA-92-8063-01 10 73494057 73494057 G A CDH23 Missense_Mutation p.V1394M 0.34 deleterious(0) probably_damaging(0.963) TCGA-92-8063-01 10 76603090 76603090 G T KAT6B Missense_Mutation p.A159S 0.27 probably_damaging(0.999) TCGA-92-8063-01 10 78674774 78674774 G A KCNMA1 Missense_Mutation p.P962L 0.22 tolerated(0.05) benign(0.391) TCGA-92-8063-01 10 85982091 85982091 G T LRIT2 Missense_Mutation p.P413H 0.29 deleterious(0) probably_damaging(0.998) TCGA-92-8063-01 10 91470780 91470780 G A KIF20B Missense_Mutation p.E185K 0.16 tolerated(0.09) benign(0.012) TCGA-92-8063-01 10 94654699 94654699 A G EXOC6 Missense_Mutation p.T112A 0.15 tolerated(0.86) benign(0.002) TCGA-92-8063-01 10 96306225 96306225 A C HELLS Silent p.G41G 0.19 TCGA-92-8063-01 10 96702195 96702195 A G CYP2C9 Intron 0.38 TCGA-92-8063-01 11 103907616 103907616 C - DDI1 Frame_Shift_Del p.D24Tfs*71 0.20 TCGA-92-8063-01 11 110007459 110007459 C G ZC3H12C Missense_Mutation p.F31L 0.23 tolerated_low_confidence(0.21) benign(0.005) TCGA-92-8063-01 11 113210160 113210160 G - TTC12 Frame_Shift_Del p.I266Lfs*4 0.24 TCGA-92-8063-01 11 117117619 117117619 A T RNF214 Missense_Mutation p.Q305L 0.20 deleterious(0) probably_damaging(0.995) TCGA-92-8063-01 11 118926815 118926815 C G HYOU1 Missense_Mutation p.A20P 0.10 tolerated(0.2) benign(0.247) TCGA-92-8063-01 11 122775998 122775998 G A C11orf63 Intron 0.41 TCGA-92-8063-01 11 123676754 123676754 A T OR6M1 Missense_Mutation p.Y102N 0.46 deleterious(0) possibly_damaging(0.541) TCGA-92-8063-01 11 123886954 123886954 C A OR10G4 Missense_Mutation p.L225M 0.24 deleterious(0.02) probably_damaging(0.971) TCGA-92-8063-01 11 128843295 128843295 C G ARHGAP32 Missense_Mutation p.V1022L 0.32 tolerated_low_confidence(0.1) benign(0.063) TCGA-92-8063-01 11 133796874 133796874 C A IGSF9B Missense_Mutation p.V582F 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-92-8063-01 11 134214927 134214927 G T GLB1L2 Splice_Site p.X118_splice 0.19 TCGA-92-8063-01 11 17140856 17140856 C A PIK3C2A Missense_Mutation p.A951S 0.18 tolerated(0.12) benign(0.252) TCGA-92-8063-01 11 17409058 17409058 C A KCNJ11 Missense_Mutation p.G194V 0.21 deleterious(0) probably_damaging(0.983) TCGA-92-8063-01 11 17464822 17464822 C T ABCC8 Missense_Mutation p.G457E 0.29 deleterious(0) probably_damaging(0.996) TCGA-92-8063-01 11 2939285 2939285 G T SLC22A18 Silent p.P241P 0.30 TCGA-92-8063-01 11 31447869 31447869 C G DNAJC24 Missense_Mutation p.Q96E 0.24 tolerated(0.23) benign(0.089) TCGA-92-8063-01 11 33589696 33589696 G T KIAA1549L Missense_Mutation p.A1088S 0.35 deleterious(0) probably_damaging(1) TCGA-92-8063-01 11 33596397 33596397 C A KIAA1549L Missense_Mutation p.H1163Q 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-92-8063-01 11 48286090 48286090 C G OR4X1 Missense_Mutation p.H226Q 0.31 tolerated(0.26) benign(0.006) TCGA-92-8063-01 11 5248266 5248266 G T HBB 5'UTR 0.26 TCGA-92-8063-01 11 534286 534286 C A HRAS Missense_Mutation p.G13C 0.15 deleterious(0.02) possibly_damaging(0.802) TCGA-92-8063-01 11 55322365 55322365 G A OR4C15 Missense_Mutation p.G195S 0.15 tolerated_low_confidence(0.13) benign(0.05) TCGA-92-8063-01 11 55540981 55540981 C G OR5D13 Missense_Mutation p.P23R 0.20 deleterious(0.01) possibly_damaging(0.491) TCGA-92-8063-01 11 55563748 55563748 C A OR5D14 Silent p.A239A 0.20 TCGA-92-8063-01 11 60268523 60268523 C G MS4A12 Missense_Mutation p.I94M 0.28 deleterious(0.03) possibly_damaging(0.873) TCGA-92-8063-01 11 6520189 6520189 C T DNHD1 Silent p.T248T 0.11 TCGA-92-8063-01 11 65272663 65272663 C T MALAT1 RNA 0.27 TCGA-92-8063-01 11 65784633 65784633 G C CATSPER1 Silent p.L738L 0.24 TCGA-92-8063-01 11 6650789 6650789 A G DCHS1 Silent p.T1685T 0.33 TCGA-92-8063-01 11 67186278 67186278 C G CARNS1 Missense_Mutation p.P139R 0.21 tolerated(0.16) benign(0.148) TCGA-92-8063-01 11 6789809 6789809 C A OR2AG2 Missense_Mutation p.C127F 0.23 deleterious(0.01) benign(0.046) TCGA-92-8063-01 11 7324298 7324298 G - SYT9 Frame_Shift_Del p.V59Sfs*58 0.17 TCGA-92-8063-01 11 73598473 73598473 G A PAAF1 Missense_Mutation p.E55K 0.37 deleterious(0.02) benign(0.002) TCGA-92-8063-01 11 75438579 75438579 G T MOGAT2 Nonsense_Mutation p.E124* 0.28 TCGA-92-8063-01 11 89896505 89896505 G T NAALAD2 Missense_Mutation p.R368L 0.21 deleterious(0.04) probably_damaging(0.987) TCGA-92-8063-01 11 92085988 92085988 G T FAT3 Missense_Mutation p.G237V 0.24 probably_damaging(1) TCGA-92-8063-01 11 92599969 92599969 C G FAT3 Missense_Mutation p.I3907M 0.23 probably_damaging(0.98) TCGA-92-8063-01 11 93543040 93543040 C T MED17 Missense_Mutation p.S581L 0.18 deleterious(0.01) benign(0.371) TCGA-92-8063-01 11 93834433 93834433 C A HEPHL1 Missense_Mutation p.S836Y 0.18 deleterious(0) probably_damaging(1) TCGA-92-8063-01 11 94129609 94129609 C T GPR83 Missense_Mutation p.V157I 0.18 deleterious(0) probably_damaging(1) TCGA-92-8063-01 11 99932039 99932039 T A CNTN5 Missense_Mutation p.V359E 0.25 deleterious(0) possibly_damaging(0.846) TCGA-92-8063-01 12 10132087 10132087 A T CLEC12A Missense_Mutation p.T125S 0.22 deleterious(0.01) probably_damaging(0.993) TCGA-92-8063-01 12 101769422 101769422 A G UTP20 Silent p.E2428E 0.28 TCGA-92-8063-01 12 108011130 108011130 A G BTBD11 Missense_Mutation p.I716M 0.22 deleterious(0.01) probably_damaging(0.98) TCGA-92-8063-01 12 11286439 11286439 C G TAS2R30 Silent p.G135G 0.26 TCGA-92-8063-01 12 121435485 121435485 C T HNF1A Intron 0.20 TCGA-92-8063-01 12 124272385 124272385 G C DNAH10 Missense_Mutation p.E425Q 0.22 benign(0.217) TCGA-92-8063-01 12 132516694 132516694 G T EP400 Missense_Mutation p.R1984M 0.21 unknown(0) TCGA-92-8063-01 12 21176181 21176181 G A SLCO1B7 Silent p.L182L 0.24 TCGA-92-8063-01 12 21457364 21457364 T C SLCO1A2 Missense_Mutation p.I196V 0.24 tolerated(0.21) benign(0.192) TCGA-92-8063-01 12 28603298 28603298 T A CCDC91 Missense_Mutation p.C291S 0.23 tolerated(0.1) possibly_damaging(0.857) TCGA-92-8063-01 12 32906862 32906862 A C YARS2 Missense_Mutation p.S313A 0.29 tolerated(0.7) benign(0.003) TCGA-92-8063-01 12 3806019 3806019 T C EFCAB4B Silent p.L49L 0.33 TCGA-92-8063-01 12 39703550 39703550 C A KIF21A Missense_Mutation p.W1372L 0.32 deleterious(0) probably_damaging(1) TCGA-92-8063-01 12 40258616 40258616 T C SLC2A13 Missense_Mutation p.T423A 0.16 tolerated(0.08) benign(0.091) TCGA-92-8063-01 12 52145294 52145294 A G SCN8A Missense_Mutation p.I763V 0.32 deleterious(0.03) benign(0.02) TCGA-92-8063-01 12 63225940 63225940 C A PPM1H Missense_Mutation p.R122L 0.21 deleterious(0.02) probably_damaging(0.997) TCGA-92-8063-01 12 69136146 69136146 G A NUP107 Silent p.K894K 0.25 TCGA-92-8063-01 12 70963581 70963581 G T PTPRB Missense_Mutation p.Q1170K 0.18 tolerated(0.27) benign(0.053) TCGA-92-8063-01 12 72372736 72372736 G C TPH2 Missense_Mutation p.R270S 0.23 tolerated(0.24) probably_damaging(0.999) TCGA-92-8063-01 12 75692730 75692730 A G CAPS2 Missense_Mutation p.C310R 0.22 tolerated(0.09) benign(0.206) TCGA-92-8063-01 12 75807421 75807421 C T GLIPR1L2 Missense_Mutation p.P175L 0.23 tolerated(0.69) possibly_damaging(0.727) TCGA-92-8063-01 12 78573460 78573460 C T NAV3 Nonsense_Mutation p.Q1817* 0.17 TCGA-92-8063-01 12 91396228 91396228 C A EPYC Missense_Mutation p.D39Y 0.24 deleterious(0) possibly_damaging(0.798) TCGA-92-8063-01 12 94761674 94761674 C T CCDC41 Silent p.V413V 0.19 TCGA-92-8063-01 13 101844279 101844279 A G NALCN Missense_Mutation p.F585L 0.13 tolerated(0.14) possibly_damaging(0.524) TCGA-92-8063-01 13 103513899 103513899 A G BIVM-ERCC5 Missense_Mutation p.K665E 0.37 tolerated(0.15) probably_damaging(0.953) TCGA-92-8063-01 13 109672176 109672176 T C MYO16 Missense_Mutation p.Y883H 0.31 deleterious(0.04) probably_damaging(0.985) TCGA-92-8063-01 13 28127462 28127462 T A LNX2 Missense_Mutation p.E554V 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-92-8063-01 13 35684952 35684952 G T NBEA Missense_Mutation p.Q613H 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-92-8063-01 13 38171406 38171406 C T POSTN Missense_Mutation p.A45T 0.38 deleterious(0) probably_damaging(0.999) TCGA-92-8063-01 13 38266199 38266199 C G TRPC4 Missense_Mutation p.D391H 0.30 deleterious(0.02) possibly_damaging(0.785) TCGA-92-8063-01 13 45563398 45563398 C T NUFIP1 Silent p.G58G 0.17 TCGA-92-8063-01 13 49842047 49842047 C A CDADC1 Silent p.A284A 0.22 TCGA-92-8063-01 14 102675425 102675425 G C WDR20 Missense_Mutation p.W337C 0.18 deleterious(0) probably_damaging(0.998) TCGA-92-8063-01 14 20295661 20295661 C T OR4N2 Silent p.T18T 0.20 TCGA-92-8063-01 14 23901985 23901985 C A MYH7 Missense_Mutation p.C122F 0.15 deleterious(0) probably_damaging(0.991) TCGA-92-8063-01 14 24567432 24567432 C T PCK2 Missense_Mutation p.P99L 0.30 deleterious(0) probably_damaging(0.999) TCGA-92-8063-01 14 33293660 33293660 C A AKAP6 Nonsense_Mutation p.S2214* 0.23 TCGA-92-8063-01 14 35593066 35593066 T A KIAA0391 Nonsense_Mutation p.Y205* 0.17 TCGA-92-8063-01 14 55203755 55203755 G T SAMD4A Missense_Mutation p.Q243H 0.26 deleterious(0.05) benign(0.024) TCGA-92-8063-01 14 64749452 64749452 C - ESR2 Frame_Shift_Del p.H85Tfs*5 0.24 TCGA-92-8063-01 14 71572135 71572135 C GT PCNX Frame_Shift_Ins p.T2094Yfs*10 0.16 TCGA-92-8063-01 14 75323514 75323514 T C PROX2 Missense_Mutation p.N306S 0.30 tolerated(0.12) benign(0.025) TCGA-92-8063-01 15 23889762 23889762 C A MAGEL2 Missense_Mutation p.R440L 0.47 tolerated(0.15) benign(0.019) TCGA-92-8063-01 15 25458852 25458852 G T SNORD115-24 RNA 0.24 TCGA-92-8063-01 15 32921884 32921884 A C ARHGAP11A Missense_Mutation p.K342N 0.32 deleterious(0) probably_damaging(0.998) TCGA-92-8063-01 15 34040394 34040394 A T RYR3 Missense_Mutation p.K2690I 0.22 possibly_damaging(0.776) TCGA-92-8063-01 15 34118901 34118901 C A RYR3 Missense_Mutation p.F3731L 0.24 benign(0.313) TCGA-92-8063-01 15 35261802 35261802 C T AQR Missense_Mutation p.A5T 0.23 tolerated(0.19) benign(0.001) TCGA-92-8063-01 15 37329119 37329119 C A MEIS2 Missense_Mutation p.D266Y 0.30 deleterious(0.03) probably_damaging(0.921) TCGA-92-8063-01 15 40846235 40846235 C A C15orf57 Missense_Mutation p.V174F 0.16 tolerated(0.05) possibly_damaging(0.554) TCGA-92-8063-01 15 40846236 40846236 C G C15orf57 Missense_Mutation p.Q173H 0.16 tolerated(0.17) benign(0.022) TCGA-92-8063-01 15 54542600 54542600 C A UNC13C Missense_Mutation p.H1136N 0.13 deleterious_low_confidence(0) possibly_damaging(0.513) TCGA-92-8063-01 15 78838076 78838076 G T PSMA4 Missense_Mutation p.W159C 0.25 deleterious(0) probably_damaging(1) TCGA-92-8063-01 15 99740222 99740222 C A TTC23 Missense_Mutation p.G221C 0.39 deleterious(0) probably_damaging(0.993) TCGA-92-8063-01 16 1584260 1584260 C T TMEM204 5'UTR 0.33 TCGA-92-8063-01 16 2159440 2159440 G A PKD1 Silent p.L1910L 0.33 TCGA-92-8063-01 16 22826270 22826270 G A HS3ST2 Silent p.R113R 0.67 TCGA-92-8063-01 16 31104667 31104667 G C VKORC1 Missense_Mutation p.F83L 0.25 tolerated(0.25) benign(0.307) TCGA-92-8063-01 16 49669750 49669750 C A ZNF423 Missense_Mutation p.G1105C 0.24 tolerated(0.2) benign(0) TCGA-92-8063-01 16 55806302 55806302 G T CES1P1 RNA 0.19 TCGA-92-8063-01 16 56519585 56519585 T G BBS2 Missense_Mutation p.K659T 0.29 tolerated(0.19) benign(0.073) TCGA-92-8063-01 16 58074601 58074601 C A MMP15 Nonsense_Mutation p.Y303* 0.23 TCGA-92-8063-01 16 72829353 72829353 T C ZFHX3 Missense_Mutation p.T2410A 0.27 benign(0.057) TCGA-92-8063-01 16 76532469 76532469 A G CNTNAP4 Missense_Mutation p.N675S 0.12 tolerated(0.39) benign(0.015) TCGA-92-8063-01 16 85696983 85696983 A T GSE1 Missense_Mutation p.T803S 0.28 deleterious(0) probably_damaging(0.999) TCGA-92-8063-01 16 89704477 89704477 G T DPEP1 Missense_Mutation p.Q361H 0.24 deleterious(0.02) benign(0.001) TCGA-92-8063-01 16 89842224 89842224 C G FANCA Splice_Site p.X609_splice 0.10 TCGA-92-8063-01 16 90028430 90028430 G T DEF8 Missense_Mutation p.C334F 0.25 tolerated(0.1) benign(0.222) TCGA-92-8063-01 17 10312758 10312758 G T MYH8 Missense_Mutation p.H579N 0.40 deleterious(0) probably_damaging(0.921) TCGA-92-8063-01 17 10312760 10312760 G T MYH8 Missense_Mutation p.A578D 0.40 deleterious(0.01) possibly_damaging(0.85) TCGA-92-8063-01 17 18875007 18875007 C G FAM83G Missense_Mutation p.G713R 0.38 tolerated(0.23) possibly_damaging(0.602) TCGA-92-8063-01 17 2594903 2594903 C A CLUH Missense_Mutation p.S1249I 0.52 deleterious(0) probably_damaging(0.933) TCGA-92-8063-01 17 27229918 27229918 G C DHRS13 Nonsense_Mutation p.Y15* 0.30 TCGA-92-8063-01 17 3101516 3101516 A C OR1A2 Missense_Mutation p.K235T 0.47 deleterious(0) probably_damaging(0.99) TCGA-92-8063-01 17 41228593 41228593 T A BRCA1 Missense_Mutation p.S1487C 0.40 deleterious(0) possibly_damaging(0.569) TCGA-92-8063-01 17 73237497 73237497 G C GGA3 Silent p.T310T 0.22 TCGA-92-8063-01 17 7578467 7578467 T G TP53 Missense_Mutation p.T155P 0.60 deleterious(0.01) possibly_damaging(0.888) TCGA-92-8063-01 17 7847499 7847499 C A CNTROB Missense_Mutation p.Q502K 0.45 tolerated(0.09) possibly_damaging(0.555) TCGA-92-8063-01 17 8047183 8047183 C G PER1 Missense_Mutation p.G825R 0.37 tolerated(0.27) possibly_damaging(0.636) TCGA-92-8063-01 17 9757847 9757847 G T GLP2R Silent p.L180L 0.27 TCGA-92-8063-01 18 47379941 47379941 C T MYO5B Missense_Mutation p.A1367T 0.39 tolerated(0.62) benign(0.003) TCGA-92-8063-01 18 7016532 7016532 A T LAMA1 Missense_Mutation p.C983S 0.19 deleterious(0) probably_damaging(1) TCGA-92-8063-01 18 72247487 72247487 C T CNDP1 Missense_Mutation p.A430V 0.18 deleterious(0) probably_damaging(0.946) TCGA-92-8063-01 18 7231257 7231257 C A LRRC30 Silent p.R41R 0.24 TCGA-92-8063-01 18 9886676 9886676 C T TXNDC2 Missense_Mutation p.P67L 0.12 tolerated(0.24) benign(0.205) TCGA-92-8063-01 19 10597431 10597431 C A KEAP1 Missense_Mutation p.W591L 0.36 deleterious(0) probably_damaging(1) TCGA-92-8063-01 19 11130295 11130295 T - SMARCA4 Frame_Shift_Del p.V845Afs*13 0.14 TCGA-92-8063-01 19 12986754 12986754 C A DNASE2 3'UTR 0.31 TCGA-92-8063-01 19 13256174 13256174 G C STX10 Silent p.P133P 0.39 TCGA-92-8063-01 19 16000431 16000431 G T CYP4F2 Silent p.L240L 0.33 TCGA-92-8063-01 19 17750328 17750328 A T UNC13A Missense_Mutation p.F955I 0.42 deleterious(0) benign(0.085) TCGA-92-8063-01 19 22157133 22157135 CAC AAAA ZNF208 Frame_Shift_Ins p.C234Ffs*6 0.46 TCGA-92-8063-01 19 22785625 22785625 G T AC011467.1 3'Flank 0.25 TCGA-92-8063-01 19 30936461 30936461 G C ZNF536 Silent p.L664L 0.41 TCGA-92-8063-01 19 37676130 37676130 C A ZNF585B Nonstop_Mutation p.*770Lext*30 0.35 TCGA-92-8063-01 19 37967240 37967240 G T ZNF570 Splice_Site p.X54_splice 0.09 TCGA-92-8063-01 19 41235294 41235294 C T ITPKC Silent p.S481S 0.39 TCGA-92-8063-01 19 42492085 42492085 C G ATP1A3 Intron 0.21 TCGA-92-8063-01 19 43382147 43382147 G A PSG1 Silent p.D116D 0.07 TCGA-92-8063-01 19 43766272 43766272 T C PSG9 Missense_Mutation p.Y150C 0.38 tolerated(0.09) possibly_damaging(0.778) TCGA-92-8063-01 19 43998882 43998882 C G PHLDB3 Missense_Mutation p.C374S 0.15 tolerated(0.16) possibly_damaging(0.717) TCGA-92-8063-01 19 45781236 45781236 C G MARK4 Missense_Mutation p.T281R 0.16 deleterious(0.01) benign(0.003) TCGA-92-8063-01 19 46027131 46027131 G T VASP Missense_Mutation p.Q302H 0.14 tolerated(0.14) benign(0.119) TCGA-92-8063-01 19 49378053 49378053 C T PPP1R15A Silent p.P521P 0.32 TCGA-92-8063-01 19 50245230 50245230 C T TSKS Missense_Mutation p.R470Q 0.22 tolerated(0.15) possibly_damaging(0.885) TCGA-92-8063-01 19 51021774 51021774 G T LRRC4B Missense_Mutation p.P399H 0.21 deleterious(0) probably_damaging(1) TCGA-92-8063-01 19 51455886 51455886 A T KLK5 Missense_Mutation p.W10R 0.46 deleterious(0.04) probably_damaging(0.993) TCGA-92-8063-01 19 5151387 5151387 G A KDM4B Silent p.G1052G 0.25 TCGA-92-8063-01 19 53762580 53762580 C T VN1R2 Missense_Mutation p.L318F 0.16 deleterious(0.02) probably_damaging(0.983) TCGA-92-8063-01 19 54754772 54754772 C A LILRB5 Missense_Mutation p.D552Y 0.38 deleterious(0.01) probably_damaging(0.94) TCGA-92-8063-01 19 55107330 55107330 A G LILRA1 Silent p.R296R 0.38 TCGA-92-8063-01 19 55148207 55148207 G T LILRB1 Missense_Mutation p.D613Y 0.08 deleterious(0.03) benign(0.209) TCGA-92-8063-01 19 56369065 56369065 C A NLRP4 Missense_Mutation p.H102Q 0.12 deleterious(0) benign(0.334) TCGA-92-8063-01 19 56466672 56466673 CA - NLRP8 Frame_Shift_Del p.Q418Vfs*15 0.36 TCGA-92-8063-01 19 58101929 58101929 C A ZIK1 Silent p.G250G 0.19 TCGA-92-8063-01 19 58511107 58511107 C A ZNF606 Intron 0.27 TCGA-92-8063-01 19 6001933 6001933 C T RFX2 Nonsense_Mutation p.W584* 0.27 TCGA-92-8063-01 1 1019552 1019552 G A C1orf159 Intron 0.27 TCGA-92-8063-01 1 109270461 109270461 G T FNDC7 Silent p.V381V 0.25 TCGA-92-8063-01 1 109482364 109482364 A T CLCC1 Nonsense_Mutation p.L312* 0.16 TCGA-92-8063-01 1 111862039 111862039 A G CHIA Missense_Mutation p.K376E 0.30 tolerated(0.09) benign(0.005) TCGA-92-8063-01 1 151315305 151315305 G A RFX5 Missense_Mutation p.P403L 0.19 deleterious_low_confidence(0.04) benign(0.01) TCGA-92-8063-01 1 152192858 152192858 T G HRNR Missense_Mutation p.H416P 0.42 unknown(0) TCGA-92-8063-01 1 158687382 158687382 T C OR6K3 Missense_Mutation p.H175R 0.52 tolerated(0.14) benign(0.02) TCGA-92-8063-01 1 158725351 158725351 T C OR6K6 Missense_Mutation p.I249T 0.45 deleterious(0) possibly_damaging(0.596) TCGA-92-8063-01 1 16458680 16458680 T C EPHA2 Missense_Mutation p.Y735C 0.23 deleterious(0) probably_damaging(1) TCGA-92-8063-01 1 175363020 175363020 G A TNR Missense_Mutation p.P418S 0.56 deleterious(0) probably_damaging(1) TCGA-92-8063-01 1 176760578 176760578 G T PAPPA2 Silent p.L1660L 0.56 TCGA-92-8063-01 1 181695244 181695244 T C CACNA1E Missense_Mutation p.L729P 0.54 deleterious(0) possibly_damaging(0.766) TCGA-92-8063-01 1 192153486 192153486 C A RGS18 Silent p.L170L 0.42 TCGA-92-8063-01 1 19426930 19426930 C G UBR4 Missense_Mutation p.K4387N 0.24 probably_damaging(0.987) TCGA-92-8063-01 1 196716438 196716438 A T CFH Nonsense_Mutation p.R1231* 0.26 TCGA-92-8063-01 1 200843208 200843208 G A GPR25 Missense_Mutation p.R348H 0.38 tolerated(0.25) benign(0.288) TCGA-92-8063-01 1 228111879 228111879 C T WNT9A Missense_Mutation p.R192Q 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-92-8063-01 1 228566472 228566472 G A OBSCN Silent p.R8916R 0.15 TCGA-92-8063-01 1 245861420 245861420 G A KIF26B Missense_Mutation p.R1946Q 0.48 deleterious(0) unknown(0) TCGA-92-8063-01 1 248845012 248845012 C A OR14I1 Silent p.L198L 0.41 TCGA-92-8063-01 1 25747260 25747260 C T RHCE Silent p.P6P 0.52 TCGA-92-8063-01 1 27215482 27215482 G A GPN2 Silent p.L182L 0.26 TCGA-92-8063-01 1 28477433 28477433 C A PTAFR Missense_Mutation p.G34C 0.42 tolerated(0.65) benign(0.014) TCGA-92-8063-01 1 34033288 34033288 A G CSMD2 Missense_Mutation p.V2739A 0.25 tolerated(0.06) probably_damaging(0.936) TCGA-92-8063-01 1 34112270 34112270 A T CSMD2 Silent p.A1544A 0.23 TCGA-92-8063-01 1 34164480 34164480 T C CSMD2 Silent p.E1226E 0.31 TCGA-92-8063-01 1 36643648 36643648 C T MAP7D1 Silent p.P518P 0.35 TCGA-92-8063-01 1 39341798 39341798 G A GJA9 5'UTR 0.15 TCGA-92-8063-01 1 52703907 52703907 A G ZFYVE9 Missense_Mutation p.Q273R 0.22 tolerated_low_confidence(0.2) benign(0.002) TCGA-92-8063-01 1 74801823 74801823 C T FPGT-TNNI3K Silent p.S338S 0.18 TCGA-92-8063-01 1 84386943 84386943 C G TTLL7 Missense_Mutation p.R426P 0.08 deleterious(0) probably_damaging(0.995) TCGA-92-8063-01 1 89325625 89325625 T C GTF2B Missense_Mutation p.I159V 0.33 tolerated(0.42) benign(0.026) TCGA-92-8063-01 1 94486919 94486919 T A ABCA4 Missense_Mutation p.N1632I 0.33 deleterious(0) probably_damaging(0.999) TCGA-92-8063-01 20 10632256 10632256 C T JAG1 Missense_Mutation p.G365S 0.12 deleterious(0) probably_damaging(1) TCGA-92-8063-01 20 4168085 4168085 A G SMOX 3'UTR 0.25 TCGA-92-8063-01 20 42194925 42194925 G T SGK2 5'UTR 0.23 TCGA-92-8063-01 20 43386739 43386739 C A RIMS4 Missense_Mutation p.R109L 0.22 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-92-8063-01 20 43851710 43851710 C T SEMG2 Silent p.N479N 0.19 TCGA-92-8063-01 20 44003779 44003779 G T TP53TG5 Missense_Mutation p.P223H 0.24 deleterious(0) probably_damaging(0.988) TCGA-92-8063-01 20 44681761 44681761 A G SLC12A5 Missense_Mutation p.H871R 0.15 deleterious(0) benign(0.217) TCGA-92-8063-01 20 45022703 45022703 T A ELMO2 Missense_Mutation p.K35M 0.29 deleterious(0) possibly_damaging(0.806) TCGA-92-8063-01 20 46307543 46307543 G A SULF2 Missense_Mutation p.P357L 0.21 tolerated(0.05) probably_damaging(1) TCGA-92-8063-01 20 58467729 58467729 A T SYCP2 Nonsense_Mutation p.C607* 0.16 TCGA-92-8063-01 20 60448946 60448946 T C CDH4 Missense_Mutation p.L347P 0.21 deleterious(0) probably_damaging(0.999) TCGA-92-8063-01 20 60448948 60448948 G T CDH4 Missense_Mutation p.D348Y 0.21 deleterious(0) probably_damaging(0.968) TCGA-92-8063-01 20 62195390 62195390 C A HELZ2 Silent p.R1595R 0.24 TCGA-92-8063-01 20 9440302 9440302 G T PLCB4 Missense_Mutation p.Q1019H 0.23 tolerated(0.06) possibly_damaging(0.631) TCGA-92-8063-01 21 11039361 11039361 C T BAGE2 RNA 0.04 TCGA-92-8063-01 21 15517109 15517109 G C LIPI Missense_Mutation p.P398R 0.20 tolerated(0.42) benign(0.022) TCGA-92-8063-01 21 22664433 22664433 C T NCAM2 Missense_Mutation p.A164V 0.24 tolerated(0.31) benign(0.004) TCGA-92-8063-01 21 31538461 31538461 G T CLDN17 Silent p.R159R 0.28 TCGA-92-8063-01 21 31913924 31913924 T A KRTAP19-6 3'UTR 0.14 TCGA-92-8063-01 21 39087427 39087427 G T KCNJ6 Silent p.V11V 0.23 TCGA-92-8063-01 21 41719714 41719714 T A DSCAM Missense_Mutation p.I365F 0.23 tolerated(0.1) benign(0.281) TCGA-92-8063-01 21 45987777 45987777 G T TSPEAR Silent p.A65A 0.29 TCGA-92-8063-01 21 47361645 47361645 G A PCBP3 3'UTR 0.29 TCGA-92-8063-01 22 16449706 16449706 A G OR11H1 Silent p.S33S 0.09 TCGA-92-8063-01 22 17469015 17469015 G C GAB4 Missense_Mutation p.S174C 0.20 deleterious(0) benign(0.184) TCGA-92-8063-01 22 18028996 18028996 G A CECR2 Missense_Mutation p.S1319N 0.30 deleterious_low_confidence(0) benign(0.066) TCGA-92-8063-01 22 35799506 35799506 G T MCM5 Missense_Mutation p.A132S 0.41 tolerated(0.23) benign(0.036) TCGA-92-8063-01 2 102964545 102964545 A G IL1RL1 Missense_Mutation p.R371G 0.23 deleterious(0.04) benign(0.372) TCGA-92-8063-01 2 116497407 116497407 A G DPP10 Missense_Mutation p.M268V 0.21 deleterious(0.01) benign(0.099) TCGA-92-8063-01 2 116538477 116538477 C A DPP10 Silent p.R467R 0.13 TCGA-92-8063-01 2 116538478 116538478 C G DPP10 Missense_Mutation p.Q468E 0.12 tolerated(0.4) benign(0.001) TCGA-92-8063-01 2 130832238 130832238 A G POTEF Missense_Mutation p.L936P 0.18 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-92-8063-01 2 152475985 152475985 C G NEB Missense_Mutation p.A3618P 0.15 probably_damaging(0.991) TCGA-92-8063-01 2 157425914 157425914 C T GPD2 Missense_Mutation p.T447I 0.22 deleterious(0) possibly_damaging(0.883) TCGA-92-8063-01 2 158272300 158272300 G T CYTIP Missense_Mutation p.S323R 0.24 deleterious(0.01) benign(0.282) TCGA-92-8063-01 2 1652600 1652600 C A PXDN Silent p.L984L 0.36 TCGA-92-8063-01 2 165953014 165953014 C A SCN3A Missense_Mutation p.W1419L 0.20 deleterious(0) probably_damaging(0.999) TCGA-92-8063-01 2 166245159 166245159 A G SCN2A Missense_Mutation p.I1615V 0.22 deleterious(0.04) probably_damaging(0.992) TCGA-92-8063-01 2 168104996 168104996 C T XIRP2 Missense_Mutation p.P2365L 0.27 probably_damaging(0.936) TCGA-92-8063-01 2 175939411 175939411 C A ATF2 Missense_Mutation p.D482Y 0.17 deleterious(0.02) probably_damaging(0.99) TCGA-92-8063-01 2 176948437 176948437 T C EVX2 Missense_Mutation p.K23R 0.27 deleterious(0.03) possibly_damaging(0.473) TCGA-92-8063-01 2 179395913 179395913 G T TTN Silent p.G35143G 0.25 TCGA-92-8063-01 2 179400504 179400504 A G TTN Missense_Mutation p.V33613A 0.11 TCGA-92-8063-01 2 179613426 179613426 T G TTN Intron 0.15 TCGA-92-8063-01 2 1796185 1796185 T A MYT1L Missense_Mutation p.I1108F 0.21 deleterious(0) probably_damaging(0.974) TCGA-92-8063-01 2 188217006 188217006 T A CALCRL Missense_Mutation p.K321N 0.15 deleterious(0) benign(0.314) TCGA-92-8063-01 2 190922209 190922209 A T MSTN Silent p.P301P 0.24 TCGA-92-8063-01 2 196799488 196799488 A T DNAH7 Missense_Mutation p.F1100I 0.29 deleterious(0) probably_damaging(1) TCGA-92-8063-01 2 196834746 196834746 C G DNAH7 Missense_Mutation p.D711H 0.31 deleterious(0.01) probably_damaging(0.966) TCGA-92-8063-01 2 200213623 200213623 C T SATB2 Missense_Mutation p.R325Q 0.21 deleterious(0.04) probably_damaging(0.992) TCGA-92-8063-01 2 202352284 202352284 A T ALS2CR11 3'Flank 0.33 TCGA-92-8063-01 2 207530676 207530676 C A DYTN Missense_Mutation p.R353L 0.19 deleterious(0) possibly_damaging(0.866) TCGA-92-8063-01 2 211512650 211512650 T C CPS1 Missense_Mutation p.Y1075H 0.27 tolerated(1) benign(0.001) TCGA-92-8063-01 2 212248708 212248708 C T ERBB4 Missense_Mutation p.E1187K 0.20 tolerated(0.88) benign(0.069) TCGA-92-8063-01 2 219394681 219394681 G T USP37 Missense_Mutation p.D287E 0.13 tolerated(0.06) benign(0.002) TCGA-92-8063-01 2 227661824 227661824 G A IRS1 Missense_Mutation p.S544L 0.17 deleterious(0) possibly_damaging(0.702) TCGA-92-8063-01 2 227661945 227661945 G C IRS1 Missense_Mutation p.P504A 0.25 deleterious_low_confidence(0.03) benign(0.055) TCGA-92-8063-01 2 241534059 241534059 G T CAPN10 Missense_Mutation p.R310S 0.24 tolerated(0.37) benign(0.021) TCGA-92-8063-01 2 241534060 241534060 G T CAPN10 Nonsense_Mutation p.E311* 0.24 TCGA-92-8063-01 2 26805705 26805705 G T CIB4 Missense_Mutation p.P172Q 0.56 deleterious(0.02) probably_damaging(0.953) TCGA-92-8063-01 2 46228641 46228641 G A PRKCE Missense_Mutation p.V308I 0.06 tolerated(0.53) benign(0.002) TCGA-92-8063-01 2 48896947 48896947 A T STON1-GTF2A1L Silent p.T1059T 0.16 TCGA-92-8063-01 2 50318626 50318626 C G NRXN1 Missense_Mutation p.G1225R 0.26 deleterious(0) probably_damaging(1) TCGA-92-8063-01 2 55252463 55252463 T C RTN4 Missense_Mutation p.I924M 0.15 tolerated(0.1) benign(0.011) TCGA-92-8063-01 2 68609700 68609700 C A PLEK Missense_Mutation p.T136N 0.15 tolerated(0.55) benign(0) TCGA-92-8063-01 2 69207075 69207075 C A GKN1 Missense_Mutation p.P130T 0.13 tolerated(0.08) possibly_damaging(0.796) TCGA-92-8063-01 2 71192237 71192237 G T ATP6V1B1 Missense_Mutation p.D510Y 0.18 deleterious_low_confidence(0) benign(0.276) TCGA-92-8063-01 2 74900583 74900583 G - SEMA4F Splice_Site p.X186_splice 0.29 TCGA-92-8063-01 2 79312629 79312629 G T REG1B Missense_Mutation p.T141N 0.16 deleterious(0.01) possibly_damaging(0.844) TCGA-92-8063-01 2 80136737 80136737 C G CTNNA2 Missense_Mutation p.D290E 0.07 tolerated(0.47) benign(0.073) TCGA-92-8063-01 2 87012974 87012974 A T CD8A 3'UTR 0.21 TCGA-92-8063-01 2 9490936 9490936 G T ASAP2 Splice_Site p.X342_splice 0.18 TCGA-92-8063-01 2 9490937 9490937 G C ASAP2 Missense_Mutation p.A342P 0.20 tolerated(0.24) benign(0.029) TCGA-92-8063-01 3 108672433 108672433 T A GUCA1C Missense_Mutation p.Q59H 0.17 deleterious(0.01) benign(0.314) TCGA-92-8063-01 3 111356052 111356052 G A CD96 Missense_Mutation p.R460Q 0.15 tolerated(0.22) benign(0) TCGA-92-8063-01 3 118621731 118621731 A G IGSF11 Missense_Mutation p.L311P 0.17 deleterious(0) probably_damaging(0.956) TCGA-92-8063-01 3 121100225 121100225 A G STXBP5L Silent p.L835L 0.47 TCGA-92-8063-01 3 124746105 124746105 G T HEG1 Missense_Mutation p.S286Y 0.12 deleterious(0) probably_damaging(0.95) TCGA-92-8063-01 3 127323819 127323819 G A MCM2 Missense_Mutation p.E165K 0.21 tolerated(0.07) possibly_damaging(0.523) TCGA-92-8063-01 3 130290156 130290156 T C COL6A6 Missense_Mutation p.Y966H 0.45 tolerated(0.35) possibly_damaging(0.895) TCGA-92-8063-01 3 131221581 131221581 C A MRPL3 Missense_Mutation p.G29W 0.17 tolerated(0.19) possibly_damaging(0.595) TCGA-92-8063-01 3 133099281 133099281 G T TMEM108 Missense_Mutation p.W242C 0.22 tolerated_low_confidence(0.12) benign(0.22) TCGA-92-8063-01 3 142523415 142523415 T G TRPC1 Missense_Mutation p.S699R 0.31 tolerated(0.41) benign(0.005) TCGA-92-8063-01 3 142537203 142537203 C G PCOLCE2 Missense_Mutation p.D408H 0.27 deleterious(0.03) benign(0.436) TCGA-92-8063-01 3 150264486 150264486 C G EIF2A 5'UTR 0.25 TCGA-92-8063-01 3 152150683 152150683 A - MBNL1 Frame_Shift_Del p.K175Nfs*2 0.08 TCGA-92-8063-01 3 173997044 173997044 T C NLGN1 Missense_Mutation p.F418S 0.21 deleterious(0) probably_damaging(0.992) TCGA-92-8063-01 3 180321001 180321001 G A TTC14 Missense_Mutation p.G126S 0.34 deleterious(0) probably_damaging(0.992) TCGA-92-8063-01 3 18462344 18462344 G C SATB1 Missense_Mutation p.P39R 0.34 deleterious(0) probably_damaging(0.916) TCGA-92-8063-01 3 191109560 191109560 A T CCDC50 3'UTR 0.32 TCGA-92-8063-01 3 42448409 42448409 C G LYZL4 Missense_Mutation p.G74A 0.33 deleterious(0.01) probably_damaging(1) TCGA-92-8063-01 3 432418 432418 C A CHL1 Missense_Mutation p.D835E 0.23 tolerated(1) benign(0.02) TCGA-92-8063-01 3 62358398 62358398 C A FEZF2 Missense_Mutation p.R49L 0.24 tolerated(0.68) benign(0.004) TCGA-92-8063-01 3 63975942 63975942 T C ATXN7 Silent p.T484T 0.33 TCGA-92-8063-01 3 93596027 93596027 C A PROS1 Silent p.L551L 0.39 TCGA-92-8063-01 3 96962975 96962975 C T EPHA6 Missense_Mutation p.P484S 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-92-8063-01 3 97983608 97983608 A G OR5H6 Silent p.L160L 0.18 TCGA-92-8063-01 4 103189114 103189114 C A SLC39A8 Silent p.A321A 0.35 TCGA-92-8063-01 4 109667943 109667943 C G ETNPPL Missense_Mutation p.A383P 0.32 tolerated(0.16) benign(0.323) TCGA-92-8063-01 4 114195716 114195716 A C ANK2 Missense_Mutation p.T532P 0.32 probably_damaging(1) TCGA-92-8063-01 4 122078293 122078293 C T TNIP3 Missense_Mutation p.D184N 0.38 tolerated(0.15) benign(0.154) TCGA-92-8063-01 4 1305771 1305771 C G MAEA Missense_Mutation p.P25R 0.25 deleterious(0) probably_damaging(1) TCGA-92-8063-01 4 138452752 138452752 G T PCDH18 Missense_Mutation p.P164Q 0.28 deleterious(0) possibly_damaging(0.781) TCGA-92-8063-01 4 155236967 155236967 G T DCHS2 Silent p.A1276A 0.38 TCGA-92-8063-01 4 155527881 155527881 G T FGG Missense_Mutation p.H369N 0.26 tolerated(0.77) benign(0.323) TCGA-92-8063-01 4 164247305 164247305 A G NPY1R Silent p.I134I 0.24 TCGA-92-8063-01 4 175898901 175898901 A T ADAM29 Missense_Mutation p.Q742L 0.36 tolerated(0.27) benign(0) TCGA-92-8063-01 4 4322847 4322847 G T ZBTB49 Missense_Mutation p.G701V 0.38 tolerated(0.24) benign(0.001) TCGA-92-8063-01 4 46053646 46053646 G T GABRG1 Missense_Mutation p.T309K 0.12 deleterious(0) probably_damaging(0.998) TCGA-92-8063-01 4 5862920 5862920 A G CRMP1 Missense_Mutation p.L163S 0.45 deleterious(0) possibly_damaging(0.646) TCGA-92-8063-01 4 78740432 78740432 T A CNOT6L Intron 0.21 TCGA-92-8063-01 4 90874218 90874218 T A MMRN1 Silent p.T1112T 0.48 TCGA-92-8063-01 4 94436538 94436538 G C GRID2 Silent p.L723L 0.41 TCGA-92-8063-01 5 131531112 131531112 G A P4HA2 Missense_Mutation p.P478L 0.15 deleterious(0) probably_damaging(1) TCGA-92-8063-01 5 134033712 134033712 G T SEC24A Missense_Mutation p.G744V 0.31 deleterious(0) probably_damaging(0.999) TCGA-92-8063-01 5 137476453 137476453 C A BRD8 Missense_Mutation p.D1186Y 0.29 deleterious(0) possibly_damaging(0.855) TCGA-92-8063-01 5 140530990 140530990 G C PCDHB6 Missense_Mutation p.E384D 0.35 tolerated(0.16) benign(0.001) TCGA-92-8063-01 5 140531515 140531515 G A PCDHB6 Silent p.V559V 0.40 TCGA-92-8063-01 5 140554127 140554127 C A PCDHB7 Missense_Mutation p.P571T 0.32 deleterious_low_confidence(0) possibly_damaging(0.737) TCGA-92-8063-01 5 140737074 140737074 C T PCDHGA4 Silent p.I769I 0.29 TCGA-92-8063-01 5 140754988 140754988 C - PCDHGA6 Frame_Shift_Del p.N446Kfs*29 0.19 TCGA-92-8063-01 5 140783496 140783496 G T PCDHGA9 Missense_Mutation p.G326V 0.33 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-92-8063-01 5 141236870 141236870 T C PCDH1 Missense_Mutation p.Y1089C 0.43 deleterious(0) probably_damaging(0.998) TCGA-92-8063-01 5 141693812 141693812 C A SPRY4 Missense_Mutation p.G311W 0.33 tolerated(0.12) possibly_damaging(0.638) TCGA-92-8063-01 5 150311158 150311158 C A ZNF300P1 RNA 0.46 TCGA-92-8063-01 5 160059214 160059214 G - ATP10B Frame_Shift_Del p.I515Sfs*26 0.25 TCGA-92-8063-01 5 16091041 16091041 C A MARCH11 Missense_Mutation p.Q281H 0.20 deleterious(0) probably_damaging(0.995) TCGA-92-8063-01 5 169697817 169697817 C A LCP2 Silent p.A143A 0.43 TCGA-92-8063-01 5 171766617 171766617 C T SH3PXD2B Missense_Mutation p.A498T 0.42 tolerated(0.36) benign(0.004) TCGA-92-8063-01 5 26881375 26881375 G T CDH9 Missense_Mutation p.A747E 0.19 deleterious(0) probably_damaging(0.958) TCGA-92-8063-01 5 33546292 33546292 C A ADAMTS12 Nonsense_Mutation p.G1440* 0.15 TCGA-92-8063-01 5 45267319 45267319 C A HCN1 Missense_Mutation p.S552I 0.25 deleterious(0) probably_damaging(0.999) TCGA-92-8063-01 5 50680468 50680468 C A ISL1 Missense_Mutation p.A41E 0.28 deleterious(0.01) possibly_damaging(0.785) TCGA-92-8063-01 5 5242187 5242187 C G ADAMTS16 Missense_Mutation p.P849A 0.24 deleterious(0.02) probably_damaging(0.952) TCGA-92-8063-01 5 58652628 58652628 T C PDE4D Intron 0.50 TCGA-92-8063-01 5 59934597 59934597 T C DEPDC1B Missense_Mutation p.D293G 0.41 deleterious(0) probably_damaging(0.977) TCGA-92-8063-01 5 75581062 75581062 G T SV2C Missense_Mutation p.C330F 0.37 deleterious(0) possibly_damaging(0.87) TCGA-92-8063-01 5 86672857 86672857 G T RASA1 Missense_Mutation p.D782Y 0.33 deleterious(0) probably_damaging(0.986) TCGA-92-8063-01 5 94756029 94756029 A T FAM81B Silent p.T193T 0.46 TCGA-92-8063-01 6 105577269 105577269 T A BVES Missense_Mutation p.L112F 0.29 tolerated(0.07) possibly_damaging(0.453) TCGA-92-8063-01 6 10725233 10725233 G T TMEM14C Silent p.L20L 0.30 TCGA-92-8063-01 6 117589342 117589342 C G VGLL2 Intron 0.15 TCGA-92-8063-01 6 129465082 129465082 G A LAMA2 Missense_Mutation p.D226N 0.23 deleterious(0) probably_damaging(0.928) TCGA-92-8063-01 6 131921247 131921247 C A MED23 Missense_Mutation p.Q717H 0.20 tolerated(0.18) benign(0.002) TCGA-92-8063-01 6 138576652 138576652 A T KIAA1244 Missense_Mutation p.S284C 0.28 deleterious(0.04) benign(0.246) TCGA-92-8063-01 6 144416341 144416341 A C SF3B5 3'UTR 0.22 TCGA-92-8063-01 6 146276051 146276051 C A SHPRH Missense_Mutation p.R136S 0.16 tolerated_low_confidence(0.06) benign(0.089) TCGA-92-8063-01 6 151336663 151336663 G T MTHFD1L Missense_Mutation p.R807L 0.19 tolerated(0.09) benign(0.009) TCGA-92-8063-01 6 152652548 152652548 C T SYNE1 Silent p.Q4424Q 0.17 TCGA-92-8063-01 6 160921920 160921920 C T LPAL2 RNA 0.22 TCGA-92-8063-01 6 168467444 168467444 C T FRMD1 Missense_Mutation p.R151K 0.27 tolerated(0.08) benign(0.395) TCGA-92-8063-01 6 20490644 20490644 G A E2F3 Missense_Mutation p.D461N 0.39 deleterious_low_confidence(0.01) benign(0.212) TCGA-92-8063-01 6 24786104 24786104 A G GMNN 3'UTR 0.18 TCGA-92-8063-01 6 27805684 27805684 G - HIST1H2AK 3'UTR 0.25 TCGA-92-8063-01 6 29142313 29142313 G T OR2J2 Missense_Mutation p.A301S 0.14 deleterious(0.01) possibly_damaging(0.894) TCGA-92-8063-01 6 32012963 32012963 A G TNXB Missense_Mutation p.F12L 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-92-8063-01 6 32063544 32063544 C T TNXB Missense_Mutation p.E696K 0.24 benign(0.118) TCGA-92-8063-01 6 33138386 33138386 C T COL11A2 Missense_Mutation p.G1073D 0.21 probably_damaging(0.969) TCGA-92-8063-01 6 3850085 3850085 G A FAM50B Missense_Mutation p.A14T 0.46 tolerated(0.05) benign(0.175) TCGA-92-8063-01 6 43607788 43607788 G T MAD2L1BP Missense_Mutation p.A147S 0.30 tolerated(0.66) benign(0.026) TCGA-92-8063-01 6 49666125 49666125 A G CRISP2 Missense_Mutation p.Y123H 0.29 deleterious(0.04) probably_damaging(0.977) TCGA-92-8063-01 6 49754083 49754083 G T PGK2 Missense_Mutation p.A273E 0.22 deleterious(0) probably_damaging(0.999) TCGA-92-8063-01 6 51777239 51777239 C - PKHD1 Frame_Shift_Del p.G2086Vfs*25 0.19 TCGA-92-8063-01 6 66044869 66044869 A C EYS Intron 0.29 TCGA-92-8063-01 6 70854139 70854139 G T COL19A1 Missense_Mutation p.G555V 0.15 deleterious(0) probably_damaging(0.999) TCGA-92-8063-01 6 73043417 73043417 G T RIMS1 Missense_Mutation p.Q1415H 0.35 deleterious(0) probably_damaging(0.98) TCGA-92-8063-01 6 79728823 79728823 C G PHIP Missense_Mutation p.C326S 0.22 deleterious(0.01) probably_damaging(0.916) TCGA-92-8063-01 6 85457785 85457785 G T TBX18 Missense_Mutation p.H264Q 0.20 deleterious(0) probably_damaging(0.997) TCGA-92-8063-01 7 100551893 100551893 C - MUC3A Frame_Shift_Del p.S215Ffs*13 0.23 TCGA-92-8063-01 7 100678457 100678457 G T MUC17 Missense_Mutation p.A1254S 0.37 unknown(0) TCGA-92-8063-01 7 103338488 103338488 C A RELN Missense_Mutation p.A319S 0.36 tolerated(0.25) benign(0.182) TCGA-92-8063-01 7 105615292 105615292 G A CDHR3 Missense_Mutation p.G17R 0.26 tolerated(0.92) benign(0.043) TCGA-92-8063-01 7 108155695 108155695 T C PNPLA8 Missense_Mutation p.I81V 0.62 tolerated_low_confidence(0.34) benign(0.001) TCGA-92-8063-01 7 12728422 12728422 A G ARL4A Silent p.K181K 0.56 TCGA-92-8063-01 7 131888146 131888146 C G PLXNA4 Silent p.L777L 0.43 TCGA-92-8063-01 7 134878088 134878088 G T WDR91 Missense_Mutation p.S518R 0.53 deleterious(0.01) benign(0.303) TCGA-92-8063-01 7 142168581 142168581 G T TRBV5-4 Missense_Mutation p.H48N 0.26 deleterious(0) probably_damaging(0.964) TCGA-92-8063-01 7 143175750 143175750 A C TAS2R41 Missense_Mutation p.N262T 0.40 tolerated(0.17) benign(0.216) TCGA-92-8063-01 7 148112557 148112557 T A CNTNAP2 Missense_Mutation p.L1282Q 0.59 tolerated(0.05) possibly_damaging(0.862) TCGA-92-8063-01 7 152373182 152373184 GCA CT XRCC2 5'UTR 0.13 TCGA-92-8063-01 7 154561251 154561251 C A DPP6 Nonsense_Mutation p.Y336* 0.33 TCGA-92-8063-01 7 31614151 31614151 C G CCDC129 Intron 0.15 TCGA-92-8063-01 7 82785168 82785168 C G PCLO Missense_Mutation p.Q263H 0.73 unknown(0) TCGA-92-8063-01 7 86468824 86468824 G T GRM3 Missense_Mutation p.C665F 0.46 deleterious(0) possibly_damaging(0.516) TCGA-92-8063-01 7 97362003 97362003 G T TAC1 Missense_Mutation p.D27Y 0.18 deleterious(0) probably_damaging(0.947) TCGA-92-8063-01 8 100974925 100974925 G T RGS22 Missense_Mutation p.H1260Q 0.27 tolerated_low_confidence(0.21) benign(0.003) TCGA-92-8063-01 8 10470384 10470384 C A RP1L1 Missense_Mutation p.W408C 0.36 probably_damaging(0.999) TCGA-92-8063-01 8 113662442 113662442 G C CSMD3 Silent p.P1047P 0.24 TCGA-92-8063-01 8 126163444 126163444 G A NSMCE2 Silent p.K63K 0.20 TCGA-92-8063-01 8 145139181 145139181 T G GPAA1 Missense_Mutation p.L254R 0.29 deleterious(0) probably_damaging(0.993) TCGA-92-8063-01 8 2020428 2020428 C A MYOM2 Missense_Mutation p.P266H 0.24 deleterious(0.05) probably_damaging(0.999) TCGA-92-8063-01 8 2808682 2808682 C G CSMD1 Silent p.V3385V 0.09 TCGA-92-8063-01 8 29039436 29039436 C G KIF13B Missense_Mutation p.K195N 0.42 deleterious(0.01) benign(0.157) TCGA-92-8063-01 8 30969129 30969129 A T WRN Splice_Site p.X697_splice 0.34 TCGA-92-8063-01 8 42403913 42403913 G A SMIM19 Missense_Mutation p.M83I 0.38 deleterious(0) benign(0.167) TCGA-92-8063-01 8 48878774 48878774 G A MCM4 Missense_Mutation p.G287D 0.25 deleterious(0) probably_damaging(0.988) TCGA-92-8063-01 8 62212572 62212572 C G CLVS1 Silent p.T62T 0.23 TCGA-92-8063-01 8 73849267 73849267 C A KCNB2 Missense_Mutation p.D559E 0.14 tolerated_low_confidence(0.57) benign(0.002) TCGA-92-8063-01 8 75737457 75737457 G T PI15 5'UTR 0.22 TCGA-92-8063-01 8 89128843 89128843 G T MMP16 Missense_Mutation p.P326T 0.24 deleterious(0.04) probably_damaging(0.921) TCGA-92-8063-01 9 101784428 101784428 C A COL15A1 Missense_Mutation p.P586H 0.22 deleterious(0) benign(0.339) TCGA-92-8063-01 9 101784429 101784429 C T COL15A1 Silent p.P586P 0.22 TCGA-92-8063-01 9 101824250 101824250 C G COL15A1 Intron 0.26 TCGA-92-8063-01 9 103947783 103947783 G A LPPR1 Missense_Mutation p.V3I 0.24 tolerated_low_confidence(1) benign(0) TCGA-92-8063-01 9 104432892 104432892 C T GRIN3A Missense_Mutation p.G601E 0.36 deleterious(0) probably_damaging(1) TCGA-92-8063-01 9 112225690 112225690 C A PTPN3 Missense_Mutation p.G9C 0.30 deleterious(0) probably_damaging(1) TCGA-92-8063-01 9 115336984 115336984 C T KIAA1958 Silent p.P208P 0.21 TCGA-92-8063-01 9 117139251 117139251 C G AKNA Missense_Mutation p.R279T 0.36 tolerated(0.28) benign(0.035) TCGA-92-8063-01 9 119737589 119737589 G - ASTN2 Frame_Shift_Del p.P545Lfs*90 0.12 TCGA-92-8063-01 9 122075559 122075559 C G BRINP1 Missense_Mutation p.Q25H 0.23 tolerated_low_confidence(0.24) benign(0.085) TCGA-92-8063-01 9 129453112 129453112 C A LMX1B Intron 0.27 TCGA-92-8063-01 9 130270259 130270259 T C FAM129B Splice_Site p.X515_splice 0.28 TCGA-92-8063-01 9 131186476 131186476 G - CERCAM Frame_Shift_Del p.L164Ffs*107 0.24 TCGA-92-8063-01 9 137694770 137694770 G T COL5A1 Missense_Mutation p.G1015C 0.33 unknown(0) TCGA-92-8063-01 9 138670588 138670588 G A KCNT1 Silent p.V883V 0.18 TCGA-92-8063-01 9 140395252 140395252 C T PNPLA7 Missense_Mutation p.G550R 0.26 deleterious(0.02) possibly_damaging(0.808) TCGA-92-8063-01 9 140777221 140777221 G T CACNA1B Missense_Mutation p.G139V 0.06 deleterious(0) benign(0.372) TCGA-92-8063-01 9 17330642 17330642 C T CNTLN Missense_Mutation p.P452S 0.20 tolerated(0.15) benign(0.093) TCGA-92-8063-01 9 17330643 17330643 C T CNTLN Missense_Mutation p.P452L 0.20 tolerated(0.08) possibly_damaging(0.733) TCGA-92-8063-01 9 35105747 35105748 - A FAM214B Frame_Shift_Ins p.L465Ffs*6 0.30 TCGA-92-8063-01 9 37740651 37740651 T A FRMPD1 Missense_Mutation p.L709Q 0.10 deleterious(0) probably_damaging(0.998) TCGA-92-8063-01 9 71152318 71152318 G C TMEM252 Missense_Mutation p.P124A 0.33 deleterious(0) probably_damaging(1) TCGA-92-8063-01 9 79933468 79933468 G A VPS13A Nonsense_Mutation p.W1758* 0.28 TCGA-92-8063-01 9 8486254 8486254 C A PTPRD Missense_Mutation p.G855C 0.38 deleterious(0) probably_damaging(1) TCGA-92-8063-01 X 102338599 102338599 T A NXF3 Missense_Mutation p.N125Y 0.78 deleterious(0) possibly_damaging(0.863) TCGA-92-8063-01 X 103432878 103432878 G C FAM199X Missense_Mutation p.S296T 0.78 tolerated_low_confidence(0.28) benign(0.004) TCGA-92-8063-01 X 110491810 110491810 G T CAPN6 Missense_Mutation p.P491T 0.52 tolerated(0.07) probably_damaging(0.975) TCGA-92-8063-01 X 124029891 124029891 C A TENM1 Silent p.R139R 0.46 TCGA-92-8063-01 X 135427874 135427874 C A GPR112 Missense_Mutation p.T670K 0.33 deleterious(0) benign(0.116) TCGA-92-8063-01 X 151821580 151821580 G C GABRQ Missense_Mutation p.E579Q 0.53 tolerated(0.16) possibly_damaging(0.838) TCGA-92-8063-01 X 21550140 21550140 G - CNKSR2 Frame_Shift_Del p.G420Efs*39 0.30 TCGA-92-8063-01 X 32380936 32380936 G C DMD Missense_Mutation p.A1765G 0.49 possibly_damaging(0.567) TCGA-92-8063-01 X 5811526 5811526 G T NLGN4X Missense_Mutation p.P595T 0.47 deleterious(0) probably_damaging(0.967) TCGA-92-8063-01 X 65253542 65253542 T C VSIG4 Silent p.S62S 0.29 TCGA-92-8063-01 X 73045926 73045926 C - XIST RNA 0.35 TCGA-92-8063-01 X 77528501 77528501 G T CYSLTR1 Missense_Mutation p.P248Q 0.54 deleterious(0) probably_damaging(1) TCGA-92-8063-01 X 78618450 78618450 C A ITM2A Missense_Mutation p.D144Y 0.47 deleterious(0) probably_damaging(0.995) TCGA-92-8063-01 X 86773209 86773209 G T KLHL4 Missense_Mutation p.D105Y 0.41 deleterious_low_confidence(0.01) benign(0.391) TCGA-92-8064-01 10 102088967 102088967 C T PKD2L1 Splice_Site p.X117_splice 0.17 TCGA-92-8064-01 10 113928267 113928267 G T GPAM Missense_Mutation p.L304I 0.09 deleterious(0.01) probably_damaging(0.942) TCGA-92-8064-01 10 131665477 131665477 C A EBF3 Missense_Mutation p.V314F 0.31 deleterious(0) benign(0.389) TCGA-92-8064-01 10 22048179 22048179 C T DNAJC1 Missense_Mutation p.E506K 0.20 deleterious(0) probably_damaging(1) TCGA-92-8064-01 10 26436449 26436449 G T MYO3A Missense_Mutation p.V866L 0.24 tolerated(1) benign(0.006) TCGA-92-8064-01 11 107940897 107940897 C A CUL5 Silent p.I285I 0.10 TCGA-92-8064-01 11 111899288 111899288 A G DLAT Missense_Mutation p.Y144C 0.11 deleterious(0) probably_damaging(0.997) TCGA-92-8064-01 11 114183004 114183004 G T NNMT Missense_Mutation p.K200N 0.15 tolerated(0.16) possibly_damaging(0.463) TCGA-92-8064-01 11 116656578 116656578 A G ZNF259 Silent p.A172A 0.11 TCGA-92-8064-01 11 123900826 123900826 C A OR10G8 Missense_Mutation p.P166H 0.23 deleterious(0.01) probably_damaging(0.972) TCGA-92-8064-01 11 134253955 134253955 G T B3GAT1 Silent p.S80S 0.16 TCGA-92-8064-01 11 134254055 134254055 G C B3GAT1 Missense_Mutation p.T47R 0.19 tolerated_low_confidence(0.64) benign(0.001) TCGA-92-8064-01 11 1629613 1629613 C A KRTAP5-3 Translation_Start_Site p.M1? 0.14 tolerated_low_confidence(0.22) unknown(0) TCGA-92-8064-01 11 17470198 17470198 A T ABCC8 Silent p.I399I 0.31 TCGA-92-8064-01 11 17531009 17531009 C G USH1C Missense_Mutation p.R636P 0.05 tolerated_low_confidence(0.17) benign(0.069) TCGA-92-8064-01 11 55036717 55036717 G T TRIM48 Splice_Site p.X193_splice 0.30 TCGA-92-8064-01 11 55432828 55432828 C A OR4C6 Silent p.T62T 0.05 TCGA-92-8064-01 11 55926962 55926962 A G OR8K5 Missense_Mutation p.Y278H 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-92-8064-01 11 55926993 55926993 G T OR8K5 Missense_Mutation p.F267L 0.13 deleterious_low_confidence(0) benign(0.109) TCGA-92-8064-01 11 56510475 56510475 C A OR9G4 Missense_Mutation p.L271F 0.11 tolerated(0.07) probably_damaging(1) TCGA-92-8064-01 11 58126475 58126475 A G OR5B17 Missense_Mutation p.V23A 0.09 tolerated_low_confidence(0.08) benign(0.008) TCGA-92-8064-01 11 58980254 58980254 C A MPEG1 Missense_Mutation p.V29F 0.06 tolerated(0.71) benign(0.003) TCGA-92-8064-01 11 61291327 61291327 G A SYT7 Silent p.L368L 0.12 TCGA-92-8064-01 11 66061905 66061905 G T TMEM151A Missense_Mutation p.R63L 0.19 tolerated(0.1) benign(0.066) TCGA-92-8064-01 11 67168269 67168269 G C PPP1CA Silent p.T114T 0.08 TCGA-92-8064-01 11 73598408 73598408 C G PAAF1 Missense_Mutation p.S33C 0.15 deleterious(0.03) benign(0.042) TCGA-92-8064-01 11 92085585 92085585 T C FAT3 Missense_Mutation p.C103R 0.18 probably_damaging(0.924) TCGA-92-8064-01 12 109530604 109530604 G A ALKBH2 5'UTR 0.06 TCGA-92-8064-01 12 14781634 14781634 G T GUCY2C Missense_Mutation p.P732Q 0.10 deleterious(0) probably_damaging(0.979) TCGA-92-8064-01 12 14781635 14781635 G C GUCY2C Missense_Mutation p.P732A 0.11 tolerated(0.07) benign(0.314) TCGA-92-8064-01 12 20905449 20905449 A T SLCO1C1 3'UTR 0.10 TCGA-92-8064-01 12 33031311 33031311 T C PKP2 Missense_Mutation p.Y168C 0.23 deleterious(0) possibly_damaging(0.907) TCGA-92-8064-01 12 47629815 47629815 C A PCED1B Silent p.P323P 0.13 TCGA-92-8064-01 12 52200679 52200679 T C SCN8A Silent p.I1803I 0.05 TCGA-92-8064-01 12 55421100 55421100 G T NEUROD4 Missense_Mutation p.V293L 0.26 tolerated(0.42) benign(0.001) TCGA-92-8064-01 12 66707808 66707811 ACAA - HELB Frame_Shift_Del p.K577Hfs*20 0.16 TCGA-92-8064-01 12 80771782 80771782 T C OTOGL Missense_Mutation p.M2330T 0.36 tolerated(0.71) benign(0.002) TCGA-92-8064-01 12 86373834 86373834 C A MGAT4C Nonsense_Mutation p.E224* 0.18 TCGA-92-8064-01 12 9006837 9006837 C A A2ML1 Missense_Mutation p.L902I 0.27 deleterious(0.01) possibly_damaging(0.573) TCGA-92-8064-01 13 100953817 100953817 G A PCCA Missense_Mutation p.R390H 0.37 deleterious(0.03) benign(0.006) TCGA-92-8064-01 13 101747967 101747967 C A NALCN Missense_Mutation p.R1076M 0.36 tolerated(0.07) benign(0.389) TCGA-92-8064-01 13 32930636 32930636 G C BRCA2 Missense_Mutation p.V2503L 0.23 tolerated(0.16) benign(0.026) TCGA-92-8064-01 13 50589834 50589834 C T KCNRG Nonsense_Mutation p.Q69* 0.15 TCGA-92-8064-01 13 70456463 70456463 G T KLHL1 Missense_Mutation p.D393E 0.12 tolerated(0.27) benign(0.058) TCGA-92-8064-01 14 100360993 100360993 G A EML1 Missense_Mutation p.R211H 0.16 deleterious(0) possibly_damaging(0.9) TCGA-92-8064-01 14 20502107 20502107 G T OR4K13 Missense_Mutation p.L271I 0.51 deleterious(0.04) benign(0.362) TCGA-92-8064-01 14 20850854 20850854 C T TEP1 Silent p.K1356K 0.53 TCGA-92-8064-01 14 22294060 22294060 G C TRAV10 Missense_Mutation p.R55T 0.49 deleterious(0.04) possibly_damaging(0.503) TCGA-92-8064-01 14 23884649 23884649 C T MYH7 Missense_Mutation p.E1742K 0.05 deleterious(0.03) probably_damaging(0.971) TCGA-92-8064-01 14 23884936 23884936 C T MYH7 Missense_Mutation p.E1687K 0.09 deleterious(0.02) probably_damaging(0.952) TCGA-92-8064-01 14 26917908 26917908 G T NOVA1 Missense_Mutation p.P261T 0.51 deleterious(0) unknown(0) TCGA-92-8064-01 14 29237425 29237425 C T FOXG1 Silent p.L314L 0.05 TCGA-92-8064-01 14 29237490 29237490 C T FOXG1 Silent p.P335P 0.05 TCGA-92-8064-01 14 36008803 36008806 TTGC - RALGAPA1 Frame_Shift_Del p.S2065Kfs*6 0.10 TCGA-92-8064-01 14 37777669 37777669 T A MIPOL1 Missense_Mutation p.I258K 0.56 deleterious(0) probably_damaging(1) TCGA-92-8064-01 14 55817704 55817704 T C FBXO34 Missense_Mutation p.V199A 0.18 tolerated(0.16) benign(0.214) TCGA-92-8064-01 14 60193673 60193673 C T RTN1 Missense_Mutation p.A577T 0.30 tolerated(0.29) benign(0.002) TCGA-92-8064-01 14 70712800 70712800 A G ADAM21P1 RNA 0.12 TCGA-92-8064-01 15 25223586 25223586 C A SNRPN Missense_Mutation p.P240T 0.07 deleterious_low_confidence(0) unknown(0) TCGA-92-8064-01 15 33023437 33023437 T C GREM1 Silent p.D182D 0.38 TCGA-92-8064-01 15 40675156 40675156 G A KNSTRN Silent p.A40A 0.23 TCGA-92-8064-01 15 78921620 78921620 T A CHRNB4 Missense_Mutation p.T343S 0.36 tolerated(0.14) benign(0.307) TCGA-92-8064-01 16 24902317 24902317 G A SLC5A11 Silent p.P264P 0.12 TCGA-92-8064-01 16 28916787 28916787 C A RABEP2 Silent p.R513R 0.35 TCGA-92-8064-01 16 28916788 28916788 C A RABEP2 Missense_Mutation p.R513L 0.35 deleterious(0) probably_damaging(0.965) TCGA-92-8064-01 16 29376228 29376228 G A SNX29P2 RNA 0.31 TCGA-92-8064-01 16 31374280 31374280 C T ITGAX Missense_Mutation p.L462F 0.38 deleterious(0) probably_damaging(0.998) TCGA-92-8064-01 16 31383736 31383736 G T ITGAX Missense_Mutation p.R733L 0.15 deleterious(0) probably_damaging(0.936) TCGA-92-8064-01 16 31391339 31391339 C A ITGAX Missense_Mutation p.P1005T 0.07 deleterious(0.04) possibly_damaging(0.873) TCGA-92-8064-01 16 56377715 56377715 C A GNAO1 Silent p.A306A 0.37 TCGA-92-8064-01 16 57005922 57005922 G A CETP Missense_Mutation p.G226E 0.28 tolerated(0.23) benign(0.077) TCGA-92-8064-01 16 65006838 65006838 C A CDH11 Missense_Mutation p.W453C 0.25 deleterious(0) probably_damaging(0.947) TCGA-92-8064-01 16 84494391 84494391 T A ATP2C2 Missense_Mutation p.F822Y 0.43 tolerated(0.48) possibly_damaging(0.89) TCGA-92-8064-01 16 87377368 87377368 C A FBXO31 Missense_Mutation p.D165Y 0.46 deleterious(0) probably_damaging(0.999) TCGA-92-8064-01 17 16527637 16527637 T C ZNF624 Missense_Mutation p.Q188R 0.12 tolerated(0.13) probably_damaging(0.953) TCGA-92-8064-01 17 20799213 20799213 G T CCDC144NL Missense_Mutation p.P41T 0.16 tolerated_low_confidence(0.05) possibly_damaging(0.556) TCGA-92-8064-01 17 21730847 21730847 G T UBBP4 Missense_Mutation p.R50L 0.32 tolerated(1) benign(0.001) TCGA-92-8064-01 17 27027500 27027500 C T SUPT6H Silent p.G1592G 0.13 TCGA-92-8064-01 17 27902394 27902395 TG - GIT1 Frame_Shift_Del p.S650Hfs*28 0.25 TCGA-92-8064-01 17 40673124 40673124 A T ATP6V0A1 Nonsense_Mutation p.K835* 0.26 TCGA-92-8064-01 17 41368554 41368554 G A TMEM106A Silent p.V172V 0.16 TCGA-92-8064-01 17 44073928 44073928 G A MAPT Silent p.K575K 0.17 TCGA-92-8064-01 17 48244833 48244833 C T SGCA Missense_Mutation p.L48F 0.21 tolerated(0.79) benign(0.006) TCGA-92-8064-01 17 72363868 72363868 A T GPR142 Missense_Mutation p.D75V 0.10 deleterious_low_confidence(0.02) benign(0.074) TCGA-92-8064-01 17 73498337 73498337 G A CASKIN2 Missense_Mutation p.P940S 0.44 tolerated(1) benign(0.001) TCGA-92-8064-01 17 73565150 73565150 G T LLGL2 Missense_Mutation p.D472Y 0.19 deleterious(0) probably_damaging(0.981) TCGA-92-8064-01 17 73871181 73871181 T A TRIM47 Missense_Mutation p.S434C 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-92-8064-01 17 7578526 7578526 C A TP53 Missense_Mutation p.C135F 0.09 deleterious(0) probably_damaging(1) TCGA-92-8064-01 18 24441241 24441241 C T AQP4 Missense_Mutation p.A156T 0.10 tolerated(0.6) benign(0.245) TCGA-92-8064-01 18 30092069 30092069 G C WBP11P1 RNA 0.15 TCGA-92-8064-01 18 50589719 50589719 G T DCC Nonsense_Mutation p.E344* 0.10 TCGA-92-8064-01 18 6263972 6263972 C G L3MBTL4 Missense_Mutation p.A65P 0.19 deleterious(0.03) probably_damaging(0.998) TCGA-92-8064-01 18 8798226 8798226 G C SOGA2 Silent p.R791R 0.15 TCGA-92-8064-01 19 16222590 16222590 G A RAB8A 5'UTR 0.05 TCGA-92-8064-01 19 19313199 19313199 C T NR2C2AP Missense_Mutation p.G82S 0.05 tolerated(0.42) benign(0.005) TCGA-92-8064-01 19 21239983 21239983 G C ZNF430 Missense_Mutation p.R290T 0.12 tolerated(0.12) benign(0.038) TCGA-92-8064-01 19 21606802 21606802 T A ZNF493 Silent p.I447I 0.20 TCGA-92-8064-01 19 23543970 23543970 C G ZNF91 Missense_Mutation p.C604S 0.07 deleterious(0.01) probably_damaging(0.948) TCGA-92-8064-01 19 31039370 31039370 A T ZNF536 Missense_Mutation p.K948N 0.05 tolerated(0.06) benign(0.022) TCGA-92-8064-01 19 37678050 37678050 T C ZNF585B Missense_Mutation p.Y130C 0.09 tolerated(0.07) benign(0.004) TCGA-92-8064-01 19 41808725 41808725 G A HNRNPUL1 Missense_Mutation p.G615S 0.34 tolerated(0.12) unknown(0) TCGA-92-8064-01 19 42406035 42406035 A C ARHGEF1 Splice_Site p.X438_splice 0.11 TCGA-92-8064-01 19 47700628 47700635 TTGTCAGG - SAE1 Splice_Site p.X292_splice 0.18 TCGA-92-8064-01 19 47969376 47969376 C A SLC8A2 Silent p.A95A 0.11 TCGA-92-8064-01 19 52327826 52327826 C A FPR3 Silent p.G275G 0.09 TCGA-92-8064-01 19 53667848 53667848 C G ZNF665 Missense_Mutation p.G632A 0.16 deleterious(0.01) probably_damaging(0.927) TCGA-92-8064-01 19 54866918 54866918 T C LAIR1 Missense_Mutation p.M275V 0.32 tolerated(0.57) benign(0) TCGA-92-8064-01 19 55604530 55604530 C A PPP1R12C Silent p.A585A 0.28 TCGA-92-8064-01 19 56243815 56243815 C G NLRP9 Missense_Mutation p.R461P 0.23 tolerated(0.13) possibly_damaging(0.693) TCGA-92-8064-01 19 6670130 6670130 G T TNFSF14 5'UTR 0.31 TCGA-92-8064-01 19 6904148 6904148 C A EMR1 Missense_Mutation p.P302T 0.23 tolerated(0.07) probably_damaging(0.969) TCGA-92-8064-01 19 7117210 7117210 G A INSR Nonsense_Mutation p.Q1336* 0.07 TCGA-92-8064-01 1 108145704 108145704 C T VAV3 Silent p.R699R 0.06 TCGA-92-8064-01 1 12820700 12820700 C T C1orf158 Intron 0.26 TCGA-92-8064-01 1 144868155 144868155 G T PDE4DIP Missense_Mutation p.P1762T 0.13 tolerated(0.1) possibly_damaging(0.783) TCGA-92-8064-01 1 145109539 145109539 G A SEC22B RNA 0.10 TCGA-92-8064-01 1 151501942 151501942 C T CGN Silent p.V671V 0.12 TCGA-92-8064-01 1 152188004 152188005 GC - HRNR Frame_Shift_Del p.A2034* 0.09 TCGA-92-8064-01 1 152190824 152190825 GC - HRNR Frame_Shift_Del p.A1094* 0.16 TCGA-92-8064-01 1 152282597 152282597 G A FLG Missense_Mutation p.R1589C 0.29 possibly_damaging(0.898) TCGA-92-8064-01 1 152286710 152286710 C T FLG Missense_Mutation p.E218K 0.14 possibly_damaging(0.637) TCGA-92-8064-01 1 158435880 158435880 T A OR10K1 Missense_Mutation p.F177I 0.23 deleterious(0) probably_damaging(0.936) TCGA-92-8064-01 1 158582649 158582650 - A SPTA1 Frame_Shift_Ins p.A2365Gfs*44 0.15 TCGA-92-8064-01 1 158736362 158736362 C G OR6N1 Missense_Mutation p.M37I 0.27 deleterious(0.04) benign(0) TCGA-92-8064-01 1 159035996 159035996 G T AIM2 Missense_Mutation p.Q174K 0.25 tolerated(0.68) benign(0.015) TCGA-92-8064-01 1 159284348 159284348 A T OR10J3 Silent p.T34T 0.08 TCGA-92-8064-01 1 160259852 160259852 A T COPA 3'UTR 0.07 TCGA-92-8064-01 1 169513715 169513715 A T F5 Silent p.T598T 0.15 TCGA-92-8064-01 1 169528521 169528521 C T F5 Silent p.E200E 0.20 TCGA-92-8064-01 1 173951992 173951992 C A RC3H1 Missense_Mutation p.G214V 0.20 deleterious(0) probably_damaging(1) TCGA-92-8064-01 1 176525547 176525547 G A PAPPA2 Missense_Mutation p.R30H 0.23 tolerated_low_confidence(0.56) benign(0.001) TCGA-92-8064-01 1 177250279 177250279 G C BRINP2 Missense_Mutation p.S656T 0.23 tolerated(0.52) benign(0.003) TCGA-92-8064-01 1 180904343 180904343 G T KIAA1614 Missense_Mutation p.G433V 0.29 tolerated(0.11) benign(0.344) TCGA-92-8064-01 1 183072553 183072553 G T LAMC1 Missense_Mutation p.G170V 0.27 deleterious(0) probably_damaging(0.987) TCGA-92-8064-01 1 200880890 200880890 C T C1orf106 Silent p.P423P 0.16 TCGA-92-8064-01 1 202850004 202850004 C A RABIF 3'UTR 0.25 TCGA-92-8064-01 1 204971808 204971808 C A NFASC Missense_Mutation p.T1074K 0.23 tolerated(1) unknown(0) TCGA-92-8064-01 1 207872583 207872583 G A CR1L Missense_Mutation p.E398K 0.23 tolerated(0.78) benign(0.004) TCGA-92-8064-01 1 230846494 230846494 G A AGT Missense_Mutation p.R35W 0.09 deleterious(0) probably_damaging(1) TCGA-92-8064-01 1 233296141 233296141 G A PCNXL2 Silent p.A1135A 0.29 TCGA-92-8064-01 1 243328498 243328498 T C CEP170 Missense_Mutation p.S922G 0.38 tolerated(0.07) probably_damaging(0.995) TCGA-92-8064-01 1 247695592 247695592 G A OR2C3 Silent p.F74F 0.12 TCGA-92-8064-01 1 248224525 248224525 C A OR2L3 Missense_Mutation p.P181Q 0.20 deleterious(0) probably_damaging(0.976) TCGA-92-8064-01 1 27709043 27709043 C A CD164L2 Missense_Mutation p.R68I 0.61 tolerated(0.21) possibly_damaging(0.682) TCGA-92-8064-01 1 31901854 31901854 G T SERINC2 Missense_Mutation p.Q279H 0.29 deleterious(0) probably_damaging(1) TCGA-92-8064-01 1 31901855 31901855 G T SERINC2 Missense_Mutation p.A280S 0.29 tolerated(1) probably_damaging(1) TCGA-92-8064-01 1 50610856 50610856 A T ELAVL4 Missense_Mutation p.R96S 0.14 deleterious(0.01) possibly_damaging(0.485) TCGA-92-8064-01 1 53932329 53932330 CG - DMRTB1 Frame_Shift_Del p.D342Lfs*30 0.29 TCGA-92-8064-01 1 71440024 71440024 G T PTGER3 Intron 0.23 TCGA-92-8064-01 20 10620140 10620140 G A JAG1 3'UTR 0.21 TCGA-92-8064-01 20 13866980 13866980 T C SEL1L2 Missense_Mutation p.Y285C 0.21 deleterious(0.04) probably_damaging(0.99) TCGA-92-8064-01 20 18462397 18462397 A T POLR3F Silent p.A272A 0.23 TCGA-92-8064-01 20 23432485 23432485 T A CST11 Missense_Mutation p.N101Y 0.21 deleterious(0.01) probably_damaging(0.985) TCGA-92-8064-01 20 34025447 34025447 G C GDF5 Missense_Mutation p.Q88E 0.23 tolerated_low_confidence(0.18) benign(0.217) TCGA-92-8064-01 20 54945594 54945594 T A AURKA Nonsense_Mutation p.K326* 0.10 TCGA-92-8064-01 21 41516527 41516527 G A DSCAM Silent p.T1050T 0.34 TCGA-92-8064-01 21 41719645 41719645 G A DSCAM Missense_Mutation p.R388C 0.27 deleterious(0.04) probably_damaging(0.959) TCGA-92-8064-01 21 45877250 45877250 G C LRRC3 Missense_Mutation p.K241N 0.08 deleterious(0) probably_damaging(0.988) TCGA-92-8064-01 21 47552166 47552166 C A COL6A2 Silent p.G920G 0.33 TCGA-92-8064-01 22 39714492 39714492 G A RPL3 Missense_Mutation p.P37S 0.06 tolerated(0.32) benign(0) TCGA-92-8064-01 2 125530547 125530547 C A CNTNAP5 Nonsense_Mutation p.S901* 0.06 TCGA-92-8064-01 2 136566226 136566226 C G LCT Missense_Mutation p.E1231Q 0.31 deleterious(0.02) possibly_damaging(0.714) TCGA-92-8064-01 2 152528962 152528962 T A NEB Missense_Mutation p.Q1407L 0.21 possibly_damaging(0.499) TCGA-92-8064-01 2 178098808 178098808 C A NFE2L2 Missense_Mutation p.E79D 0.32 deleterious(0) probably_damaging(0.999) TCGA-92-8064-01 2 178098809 178098809 T C NFE2L2 Missense_Mutation p.E79G 0.33 deleterious(0) probably_damaging(1) TCGA-92-8064-01 2 241713623 241713623 G A KIF1A Silent p.Y338Y 0.24 TCGA-92-8064-01 2 242035439 242035439 C T MTERFD2 Missense_Mutation p.D374N 0.38 deleterious_low_confidence(0) unknown(0) TCGA-92-8064-01 2 74469147 74469147 A G SLC4A5 Silent p.L698L 0.08 TCGA-92-8064-01 2 86378494 86378494 G A IMMT Missense_Mutation p.R443W 0.16 deleterious(0) possibly_damaging(0.773) TCGA-92-8064-01 2 8957762 8957762 C T KIDINS220 Missense_Mutation p.E98K 0.12 deleterious(0) probably_damaging(0.999) TCGA-92-8064-01 2 90060773 90060773 C A IGKV6D-21 Silent p.I40I 0.39 TCGA-92-8064-01 2 90212186 90212186 T G IGKV3D-11 Missense_Mutation p.L93R 0.18 deleterious(0) probably_damaging(0.979) TCGA-92-8064-01 2 98413960 98413960 G T TMEM131 Nonsense_Mutation p.S913* 0.10 TCGA-92-8064-01 3 113775305 113775305 C T KIAA1407 Silent p.L3L 0.08 TCGA-92-8064-01 3 121414395 121414395 C A GOLGB1 Nonsense_Mutation p.E1659* 0.20 TCGA-92-8064-01 3 121613358 121613359 CT - SLC15A2 Frame_Shift_Del p.L13Ffs*7 0.31 TCGA-92-8064-01 3 122004106 122004106 C T CASR 3'UTR 0.37 TCGA-92-8064-01 3 122004109 122004109 C A CASR 3'UTR 0.19 TCGA-92-8064-01 3 128780766 128780766 A C GP9 Missense_Mutation p.S62R 0.24 deleterious(0) probably_damaging(0.987) TCGA-92-8064-01 3 130437250 130437250 T C PIK3R4 Missense_Mutation p.T704A 0.10 deleterious(0.02) benign(0.018) TCGA-92-8064-01 3 134851697 134851697 G A EPHB1 Missense_Mutation p.R368Q 0.08 tolerated(0.64) benign(0.096) TCGA-92-8064-01 3 138433507 138433507 C G PIK3CB Missense_Mutation p.V369L 0.08 tolerated(0.28) benign(0.061) TCGA-92-8064-01 3 142756045 142756045 G A U2SURP Missense_Mutation p.A697T 0.19 tolerated(0.05) benign(0.036) TCGA-92-8064-01 3 147113751 147113751 T C ZIC4 Silent p.V242V 0.25 TCGA-92-8064-01 3 157154669 157154669 C G PTX3 5'UTR 0.08 TCGA-92-8064-01 3 158991625 158991625 C A IQCJ-SCHIP1 Intron 0.24 TCGA-92-8064-01 3 166958567 166958567 T A ZBBX 3'UTR 0.43 TCGA-92-8064-01 3 167035372 167035372 G C ZBBX Missense_Mutation p.Q333E 0.11 tolerated(0.07) benign(0.015) TCGA-92-8064-01 3 167090683 167090683 T C ZBBX Missense_Mutation p.R3G 0.48 deleterious(0) benign(0.012) TCGA-92-8064-01 3 172491783 172491783 G T ECT2 Missense_Mutation p.D507Y 0.33 deleterious(0.01) probably_damaging(0.992) TCGA-92-8064-01 3 190122670 190122670 A G CLDN16 Missense_Mutation p.K183E 0.28 deleterious(0) probably_damaging(0.999) TCGA-92-8064-01 3 193002850 193002850 T A ATP13A5 Missense_Mutation p.N1027Y 0.18 deleterious(0) possibly_damaging(0.867) TCGA-92-8064-01 3 197579467 197579467 G T LRCH3 Silent p.P522P 0.09 TCGA-92-8064-01 3 44952879 44952879 C T TGM4 Silent p.L632L 0.23 TCGA-92-8064-01 3 48510379 48510379 C T SHISA5 3'UTR 0.40 TCGA-92-8064-01 4 113351707 113351707 G A ALPK1 Missense_Mutation p.G335D 0.21 deleterious(0) probably_damaging(0.996) TCGA-92-8064-01 4 177071012 177071012 C A WDR17 Missense_Mutation p.S675Y 0.39 deleterious(0) probably_damaging(0.999) TCGA-92-8064-01 4 55976668 55976668 A G KDR Missense_Mutation p.M386T 0.32 tolerated(0.46) benign(0.002) TCGA-92-8064-01 4 6602464 6602464 G C MAN2B2 Missense_Mutation p.G507A 0.29 deleterious(0) probably_damaging(0.996) TCGA-92-8064-01 4 76440676 76440676 G T THAP6 Missense_Mutation p.C5F 0.26 deleterious(0) probably_damaging(1) TCGA-92-8064-01 4 79841818 79841818 C A PAQR3 Nonsense_Mutation p.G271* 0.28 TCGA-92-8064-01 5 126755874 126755874 G A MEGF10 Missense_Mutation p.G522E 0.16 deleterious(0.01) probably_damaging(0.976) TCGA-92-8064-01 5 135391429 135391429 C T TGFBI Silent p.L491L 0.14 TCGA-92-8064-01 5 13883046 13883046 C T DNAH5 Silent p.G1047G 0.28 TCGA-92-8064-01 5 140744905 140744905 A T PCDHGA5 Silent p.T336T 0.33 TCGA-92-8064-01 5 26890673 26890673 C G CDH9 Missense_Mutation p.K418N 0.17 deleterious(0.01) benign(0.207) TCGA-92-8064-01 5 35068966 35068966 C A PRLR Missense_Mutation p.D234Y 0.08 deleterious(0) probably_damaging(0.99) TCGA-92-8064-01 5 38931989 38931989 G A OSMR Silent p.S739S 0.05 TCGA-92-8064-01 5 54424330 54424331 GA - CDC20B Frame_Shift_Del p.L271Hfs*3 0.08 TCGA-92-8064-01 5 6337293 6337293 T G CTD-2324F15.2 RNA 0.07 TCGA-92-8064-01 5 88057044 88057044 A C MEF2C Intron 0.29 TCGA-92-8064-01 6 152651859 152651859 A C SYNE1 Missense_Mutation p.V4654G 0.48 possibly_damaging(0.575) TCGA-92-8064-01 6 15513221 15513221 A G JARID2 Missense_Mutation p.K1071E 0.07 tolerated(0.1) benign(0.046) TCGA-92-8064-01 6 160958904 160958904 C T LPA Missense_Mutation p.G1942D 0.12 deleterious(0) probably_damaging(0.988) TCGA-92-8064-01 6 22297195 22297195 G T PRL Nonsense_Mutation p.S6* 0.26 TCGA-92-8064-01 6 26017594 26017594 C T HIST1H1A Missense_Mutation p.A123T 0.15 tolerated(0.26) unknown(0) TCGA-92-8064-01 6 30919778 30919778 A T DPCR1 Missense_Mutation p.K1179N 0.13 tolerated(0.21) probably_damaging(0.967) TCGA-92-8064-01 6 32902681 32902681 A G HLA-DMB 3'UTR 0.11 TCGA-92-8064-01 6 37358668 37358668 A T RNF8 3'UTR 0.43 TCGA-92-8064-01 6 37622663 37622663 A T MDGA1 Missense_Mutation p.Y209N 0.07 deleterious(0) probably_damaging(0.999) TCGA-92-8064-01 6 38879359 38879359 A G DNAH8 Missense_Mutation p.I3069V 0.25 benign(0.002) TCGA-92-8064-01 6 38957918 38957918 T C DNAH8 Missense_Mutation p.V4178A 0.09 benign(0.1) TCGA-92-8064-01 6 42832547 42832547 G C GLTSCR1L Missense_Mutation p.G868A 0.27 tolerated_low_confidence(0.5) benign(0.005) TCGA-92-8064-01 6 46657276 46657276 G A TDRD6 Missense_Mutation p.E471K 0.07 tolerated(0.51) benign(0.04) TCGA-92-8064-01 6 50683063 50683063 C G TFAP2D Missense_Mutation p.L92V 0.03 deleterious(0) benign(0.001) TCGA-92-8064-01 6 88853703 88853703 A T CNR1 Missense_Mutation p.C431S 0.32 tolerated(1) benign(0.08) TCGA-92-8064-01 7 103252215 103252215 C G RELN Missense_Mutation p.R913P 0.12 deleterious(0) probably_damaging(0.933) TCGA-92-8064-01 7 120387736 120387736 C A KCND2 Silent p.R573R 0.38 TCGA-92-8064-01 7 120901772 120901772 C A CPED1 Intron 0.33 TCGA-92-8064-01 7 122635712 122635712 T C TAS2R16 5'UTR 0.08 TCGA-92-8064-01 7 123136949 123136949 T C IQUB Missense_Mutation p.I345M 0.14 deleterious(0.02) benign(0.15) TCGA-92-8064-01 7 136700486 136700486 G C CHRM2 Missense_Mutation p.V292L 0.06 tolerated(0.72) benign(0.002) TCGA-92-8064-01 7 144062309 144062309 C T ARHGEF5 Silent p.T849T 0.04 TCGA-92-8064-01 7 14613880 14613880 G A DGKB Missense_Mutation p.P577L 0.21 deleterious(0) possibly_damaging(0.492) TCGA-92-8064-01 7 150499385 150499385 C A TMEM176A Nonsense_Mutation p.S86* 0.18 TCGA-92-8064-01 7 1607316 1607316 G C PSMG3 3'UTR 0.23 TCGA-92-8064-01 7 27196206 27196206 G A HOXA7 5'UTR 0.12 TCGA-92-8064-01 7 37988575 37988575 G A EPDR1 Missense_Mutation p.D135N 0.23 tolerated(0.07) probably_damaging(0.986) TCGA-92-8064-01 7 53103944 53103944 G A POM121L12 Missense_Mutation p.G194R 0.24 deleterious(0.03) probably_damaging(0.991) TCGA-92-8064-01 7 57188261 57188261 G T ZNF479 Missense_Mutation p.H287Q 0.08 deleterious(0.01) possibly_damaging(0.78) TCGA-92-8064-01 7 5983024 5983024 G C RSPH10B Nonsense_Mutation p.Y563* 0.21 TCGA-92-8064-01 7 72992906 72992906 T A TBL2 5'UTR 0.16 TCGA-92-8064-01 7 80300359 80300360 TC - CD36 Frame_Shift_Del p.P296Ifs*9 0.26 TCGA-92-8064-01 7 8196730 8196730 C A ICA1 Intron 0.13 TCGA-92-8064-01 7 83035313 83035313 G C SEMA3E Silent p.L292L 0.29 TCGA-92-8064-01 7 88389391 88389391 C G ZNF804B Missense_Mutation p.P34R 0.12 tolerated(0.38) possibly_damaging(0.83) TCGA-92-8064-01 7 92732857 92732857 C A SAMD9 Missense_Mutation p.A852S 0.11 tolerated(0.84) benign(0.079) TCGA-92-8064-01 7 97833002 97833002 C A LMTK2 Missense_Mutation p.S1408R 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-92-8064-01 8 100831654 100831654 C T VPS13B Missense_Mutation p.P2904L 0.07 tolerated(0.11) benign(0.003) TCGA-92-8064-01 8 123963773 123963773 C A ZHX2 Missense_Mutation p.T8K 0.22 deleterious(0) probably_damaging(0.999) TCGA-92-8064-01 8 133141665 133141665 A C KCNQ3 Missense_Mutation p.N821K 0.37 tolerated(0.18) benign(0.077) TCGA-92-8064-01 8 139163867 139163867 T G FAM135B Missense_Mutation p.T951P 0.06 tolerated(0.24) benign(0.004) TCGA-92-8064-01 8 144657642 144657642 C T NAPRT1 Silent p.K414K 0.15 TCGA-92-8064-01 8 144946522 144946522 G T EPPK1 Missense_Mutation p.S300R 0.08 possibly_damaging(0.736) TCGA-92-8064-01 8 24772071 24772071 G A NEFM Silent p.T255T 0.13 TCGA-92-8064-01 8 32505255 32505255 G T NRG1 Intron 0.10 TCGA-92-8064-01 8 42914303 42914303 T G FNTA Missense_Mutation p.I90S 0.16 deleterious(0) probably_damaging(0.993) TCGA-92-8064-01 8 67047274 67047274 C G TRIM55 Missense_Mutation p.R131G 0.04 deleterious(0) possibly_damaging(0.63) TCGA-92-8064-01 8 67369095 67369095 A T ADHFE1 Nonsense_Mutation p.K344* 0.14 TCGA-92-8064-01 8 77764324 77764324 C A ZFHX4 Missense_Mutation p.P1723T 0.13 possibly_damaging(0.803) TCGA-92-8064-01 8 81599563 81599563 G A ZNF704 Silent p.D152D 0.13 TCGA-92-8064-01 8 82715424 82715424 G T SNX16 Missense_Mutation p.Q241K 0.11 tolerated(0.18) probably_damaging(0.998) TCGA-92-8064-01 8 91638003 91638003 G A TMEM64 Silent p.L347L 0.18 TCGA-92-8064-01 8 91643936 91643936 C A TMEM64 Splice_Site p.X266_splice 0.30 TCGA-92-8064-01 8 9627680 9627680 G T TNKS Missense_Mutation p.A1269S 0.21 deleterious(0) probably_damaging(0.948) TCGA-92-8064-01 9 103035165 103035166 GC - INVS Frame_Shift_Del p.A531Ffs*4 0.09 TCGA-92-8064-01 9 107332175 107332175 G T OR13C8 Missense_Mutation p.A243S 0.17 tolerated(0.06) benign(0.097) TCGA-92-8064-01 9 123620553 123620553 C T PHF19 Missense_Mutation p.G471D 0.19 tolerated(0.25) probably_damaging(0.999) TCGA-92-8064-01 9 139391043 139391043 T C NOTCH1 Missense_Mutation p.Q2383R 0.11 tolerated(0.18) benign(0.135) TCGA-92-8064-01 9 15666187 15666187 T A CCDC171 Silent p.A314A 0.48 TCGA-92-8064-01 9 23701594 23701594 T A ELAVL2 Missense_Mutation p.R166W 0.41 deleterious(0) probably_damaging(0.998) TCGA-92-8064-01 9 32633269 32633269 G T TAF1L Missense_Mutation p.P770Q 0.40 deleterious(0) possibly_damaging(0.906) TCGA-92-8064-01 9 32634251 32634251 T C TAF1L Missense_Mutation p.K443E 0.41 tolerated(0.12) possibly_damaging(0.463) TCGA-92-8064-01 9 33166837 33166838 - G B4GALT1 Frame_Shift_Ins p.A111Rfs*2 0.27 TCGA-92-8064-01 9 34709413 34709413 G T CCL21 Nonsense_Mutation p.S128* 0.19 TCGA-92-8064-01 9 5335385 5335385 C T RLN1 Missense_Mutation p.D142N 0.16 tolerated(0.09) possibly_damaging(0.582) TCGA-92-8064-01 9 8375953 8375953 C A PTPRD Silent p.P1548P 0.36 TCGA-92-8064-01 9 84532686 84532686 T A SPATA31D5P RNA 0.27 TCGA-92-8064-01 9 85863267 85863267 G A FRMD3 Missense_Mutation p.L454F 0.13 deleterious(0.03) probably_damaging(0.998) TCGA-92-8064-01 9 96212767 96212767 C T FAM120AOS Silent p.V226V 0.09 TCGA-92-8064-01 9 96422842 96422842 G A PHF2 Silent p.K566K 0.27 TCGA-92-8064-01 X 118603879 118603879 G T SLC25A5 Missense_Mutation p.A123S 0.40 tolerated(0.07) possibly_damaging(0.75) TCGA-92-8064-01 X 142718386 142718386 A G SLITRK4 Missense_Mutation p.L180S 0.14 deleterious(0) probably_damaging(0.998) TCGA-92-8064-01 X 69424309 69424309 G T DGAT2L6 Missense_Mutation p.G268C 0.48 deleterious(0) probably_damaging(1) TCGA-92-8064-01 X 73065801 73065801 G A XIST RNA 0.44 TCGA-92-8064-01 X 84519280 84519280 G T ZNF711 Splice_Site p.X208_splice 0.38 TCGA-92-8065-01 10 102296359 102296359 G A HIF1AN Missense_Mutation p.M123I 0.33 tolerated(0.14) benign(0.255) TCGA-92-8065-01 10 103371495 103371495 C T FBXW4 Missense_Mutation p.D337N 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-92-8065-01 10 103588945 103588945 C T KCNIP2 Missense_Mutation p.D94N 0.27 deleterious(0.05) benign(0.215) TCGA-92-8065-01 10 104678683 104678683 G A CNNM2 Missense_Mutation p.R149Q 0.23 tolerated(0.55) benign(0.126) TCGA-92-8065-01 10 115536909 115536909 G A PLEKHS1 Missense_Mutation p.R353H 0.11 tolerated(0.4) benign(0.014) TCGA-92-8065-01 10 126673379 126673379 G C ZRANB1 Missense_Mutation p.E649Q 0.06 tolerated(1) benign(0.004) TCGA-92-8065-01 10 129902254 129902254 G A MKI67 Missense_Mutation p.S2617L 0.27 tolerated(0.15) possibly_damaging(0.615) TCGA-92-8065-01 10 25887844 25887844 G C GPR158 Missense_Mutation p.E1097Q 0.10 tolerated(0.56) benign(0.105) TCGA-92-8065-01 10 32096558 32096558 C G ARHGAP12 3'UTR 0.19 TCGA-92-8065-01 10 35928615 35928615 G C FZD8 Silent p.P581P 0.15 TCGA-92-8065-01 10 5788604 5788604 G A FAM208B Missense_Mutation p.E1074K 0.21 tolerated(1) benign(0.005) TCGA-92-8065-01 10 70450755 70450755 C T TET1 Silent p.D1865D 0.19 TCGA-92-8065-01 10 73848020 73848020 C A SPOCK2 Nonsense_Mutation p.E23* 0.29 TCGA-92-8065-01 10 75006529 75006529 C A DNAJC9 Nonsense_Mutation p.E80* 0.18 TCGA-92-8065-01 10 75071615 75071615 G C TTC18 Missense_Mutation p.L451V 0.25 tolerated(0.53) benign(0.002) TCGA-92-8065-01 10 82275982 82275982 C T TSPAN14 Missense_Mutation p.S215F 0.27 tolerated(0.71) benign(0.098) TCGA-92-8065-01 10 98165023 98165023 G A TLL2 Silent p.V411V 0.19 TCGA-92-8065-01 11 108032682 108032682 G T NPAT Missense_Mutation p.T1044K 0.13 tolerated(0.87) benign(0.234) TCGA-92-8065-01 11 110501461 110501461 G C ARHGAP20 Missense_Mutation p.C81W 0.22 deleterious(0.03) possibly_damaging(0.892) TCGA-92-8065-01 11 116662553 116662553 G A APOA5 Silent p.L8L 0.24 TCGA-92-8065-01 11 12234808 12234808 G C MICAL2 Missense_Mutation p.R233T 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-92-8065-01 11 128868268 128868268 C G ARHGAP32 Missense_Mutation p.E367Q 0.26 tolerated(0.05) probably_damaging(0.991) TCGA-92-8065-01 11 1586850 1586850 G A DUSP8 Silent p.L69L 0.47 TCGA-92-8065-01 11 33565844 33565844 G A KIAA1549L Missense_Mutation p.R615K 0.21 tolerated_low_confidence(1) benign(0) TCGA-92-8065-01 11 46401405 46401405 G T DGKZ Nonsense_Mutation p.E1088* 0.32 TCGA-92-8065-01 11 46666895 46666895 C G ATG13 Missense_Mutation p.Q26E 0.17 deleterious(0.01) probably_damaging(0.926) TCGA-92-8065-01 11 48327790 48327790 A T OR4S1 Missense_Mutation p.N6Y 0.22 deleterious(0) probably_damaging(0.995) TCGA-92-8065-01 11 57177518 57177518 G A SLC43A3 Silent p.F379F 0.32 TCGA-92-8065-01 11 57252656 57252656 G A SLC43A1 Silent p.F531F 0.21 TCGA-92-8065-01 11 58125912 58125912 C G OR5B17 Missense_Mutation p.V211L 0.22 deleterious_low_confidence(0.04) possibly_damaging(0.517) TCGA-92-8065-01 11 62296992 62296992 C G AHNAK Missense_Mutation p.E1633Q 0.23 benign(0.253) TCGA-92-8065-01 11 63967697 63967697 G C STIP1 Missense_Mutation p.D393H 0.19 deleterious(0) probably_damaging(0.997) TCGA-92-8065-01 11 65300213 65300213 C A SCYL1 Silent p.I389I 0.23 TCGA-92-8065-01 11 65300273 65300273 C T SCYL1 Silent p.V409V 0.26 TCGA-92-8065-01 11 65307200 65307200 G A LTBP3 Missense_Mutation p.R1180C 0.25 tolerated(0.07) possibly_damaging(0.906) TCGA-92-8065-01 11 65308594 65308594 G A LTBP3 Intron 0.43 TCGA-92-8065-01 11 65308721 65308721 G A LTBP3 Silent p.F923F 0.25 TCGA-92-8065-01 11 65315508 65315508 C T LTBP3 Missense_Mutation p.E577K 0.18 deleterious(0.03) benign(0.223) TCGA-92-8065-01 11 65351738 65351738 C G EHBP1L1 Missense_Mutation p.S1040R 0.21 deleterious(0) possibly_damaging(0.488) TCGA-92-8065-01 11 65687430 65687430 G C DRAP1 Missense_Mutation p.E43Q 0.39 deleterious(0) probably_damaging(0.991) TCGA-92-8065-01 11 66191649 66191649 C T NPAS4 Nonsense_Mutation p.Q430* 0.19 TCGA-92-8065-01 11 77413533 77413533 C G RSF1 Missense_Mutation p.Q247H 0.29 tolerated(0.14) benign(0.155) TCGA-92-8065-01 11 85988094 85988094 G A EED Missense_Mutation p.E347K 0.32 tolerated(0.08) benign(0.059) TCGA-92-8065-01 12 104388181 104388181 G A GLT8D2 Silent p.A233A 0.20 TCGA-92-8065-01 12 107372394 107372394 G A MTERFD3 Silent p.F33F 0.22 TCGA-92-8065-01 12 109605767 109605767 G C ACACB Missense_Mutation p.E285Q 0.24 deleterious(0) probably_damaging(0.946) TCGA-92-8065-01 12 120650146 120650146 G C PXN Missense_Mutation p.Q597E 0.09 tolerated(0.12) benign(0.057) TCGA-92-8065-01 12 123187095 123187095 G A HCAR2 Missense_Mutation p.P246S 0.12 deleterious(0) probably_damaging(1) TCGA-92-8065-01 12 123414459 123414459 C T ABCB9 Silent p.%3D 0.33 TCGA-92-8065-01 12 132627334 132627334 A G DDX51 Silent p.P203P 0.22 TCGA-92-8065-01 12 132685776 132685776 C G GALNT9 Missense_Mutation p.E66Q 0.15 tolerated(0.12) possibly_damaging(0.53) TCGA-92-8065-01 12 133198483 133198483 G C P2RX2 Missense_Mutation p.Q473H 0.25 deleterious_low_confidence(0) probably_damaging(0.922) TCGA-92-8065-01 12 133198605 133198605 G C P2RX2 3'Flank 0.25 TCGA-92-8065-01 12 48134523 48134523 G C RAPGEF3 Missense_Mutation p.F711L 0.22 deleterious(0) probably_damaging(0.998) TCGA-92-8065-01 12 4919200 4919200 G C KCNA6 5'UTR 0.20 TCGA-92-8065-01 12 49432335 49432335 G C KMT2D Nonsense_Mutation p.S2935* 0.19 TCGA-92-8065-01 12 53070962 53070962 C G KRT1 Missense_Mutation p.E379Q 0.20 tolerated(0.06) probably_damaging(0.975) TCGA-92-8065-01 12 53169333 53169333 G A KRT76 Silent p.L218L 0.17 TCGA-92-8065-01 12 56492362 56492362 C A ERBB3 Intron 0.17 TCGA-92-8065-01 12 56506624 56506624 G C PA2G4 Missense_Mutation p.E379D 0.19 tolerated(0.17) benign(0.069) TCGA-92-8065-01 12 57039695 57039695 C T ATP5B Missense_Mutation p.R18Q 0.36 tolerated_low_confidence(0.28) benign(0.001) TCGA-92-8065-01 12 58152722 58152722 C G MARCH9 3'UTR 0.40 TCGA-92-8065-01 12 66743024 66743024 C T GRIP1 Silent p.V1002V 0.27 TCGA-92-8065-01 12 7047065 7047065 C G ATN1 Missense_Mutation p.F784L 0.38 probably_damaging(0.977) TCGA-92-8065-01 13 110850908 110850908 T G COL4A1 Silent p.G397G 0.28 TCGA-92-8065-01 13 37524102 37524102 C T ALG5 Missense_Mutation p.E318K 0.18 tolerated(0.75) benign(0.001) TCGA-92-8065-01 13 38213246 38213246 C A TRPC4 Silent p.V719V 0.21 TCGA-92-8065-01 13 51528068 51528068 G C RNASEH2B Missense_Mutation p.E257Q 0.15 tolerated(0.07) possibly_damaging(0.517) TCGA-92-8065-01 13 93518599 93518599 T A GPC5 Silent p.T542T 0.43 TCGA-92-8065-01 13 99038015 99038015 G A FARP1 Missense_Mutation p.E236K 0.14 deleterious(0) probably_damaging(0.969) TCGA-92-8065-01 14 20612095 20612095 C T OR4N5 Silent p.A67A 0.17 TCGA-92-8065-01 14 21992538 21992538 C G SALL2 Missense_Mutation p.D442H 0.25 deleterious(0) probably_damaging(0.999) TCGA-92-8065-01 14 24534233 24534233 G A LRRC16B Silent p.K1049K 0.26 TCGA-92-8065-01 14 31539108 31539108 C T AP4S1 Silent p.F66F 0.22 TCGA-92-8065-01 14 52520562 52520562 C T NID2 Silent p.E388E 0.24 TCGA-92-8065-01 14 57746948 57746948 C G AP5M1 Missense_Mutation p.I252M 0.21 deleterious(0.01) benign(0.217) TCGA-92-8065-01 15 59971830 59971830 C G BNIP2 Missense_Mutation p.D207H 0.25 deleterious(0.01) possibly_damaging(0.477) TCGA-92-8065-01 15 66782890 66782890 T G MAP2K1 Silent p.G373G 0.34 TCGA-92-8065-01 15 91026623 91026623 A G IQGAP1 Missense_Mutation p.M1196V 0.22 deleterious(0.02) benign(0.089) TCGA-92-8065-01 16 12758938 12758938 C T CPPED1 Silent p.R250R 0.24 TCGA-92-8065-01 16 14989770 14989770 T G NOMO1 3'UTR 0.22 TCGA-92-8065-01 16 28507373 28507373 C T APOBR Silent p.A337A 0.31 TCGA-92-8065-01 16 30102099 30102099 C G TBX6 Missense_Mutation p.M111I 0.30 deleterious(0) possibly_damaging(0.807) TCGA-92-8065-01 16 3021529 3021529 C T PAQR4 Silent p.I134I 0.20 TCGA-92-8065-01 16 30569431 30569431 C - ZNF764 Frame_Shift_Del p.A25Lfs*2 0.35 TCGA-92-8065-01 16 3119171 3119171 G T IL32 Missense_Mutation p.A128S 0.11 deleterious(0.03) probably_damaging(0.986) TCGA-92-8065-01 16 31503396 31503396 C G C16orf58 Missense_Mutation p.E415Q 0.18 tolerated(0.22) benign(0.009) TCGA-92-8065-01 16 65016069 65016069 C T CDH11 Missense_Mutation p.E379K 0.25 deleterious(0) probably_damaging(0.989) TCGA-92-8065-01 16 732139 732139 T A JMJD8 3'UTR 0.14 TCGA-92-8065-01 16 77359862 77359862 C G ADAMTS18 Missense_Mutation p.E645Q 0.29 tolerated(0.61) benign(0.004) TCGA-92-8065-01 17 11603137 11603137 C T DNAH9 Silent p.L1654L 0.40 TCGA-92-8065-01 17 2202957 2202957 G C SMG6 Missense_Mutation p.P364A 0.38 tolerated_low_confidence(0.37) benign(0.01) TCGA-92-8065-01 17 27014464 27014464 C T SUPT6H Missense_Mutation p.P994L 0.19 deleterious(0) probably_damaging(0.917) TCGA-92-8065-01 17 27047863 27047863 G A RPL23A Missense_Mutation p.R55Q 0.23 tolerated(0.72) benign(0.053) TCGA-92-8065-01 17 27898626 27898626 C T TP53I13 Silent p.F67F 0.25 TCGA-92-8065-01 17 3438901 3438901 G C TRPV3 Missense_Mutation p.F250L 0.47 deleterious(0) possibly_damaging(0.641) TCGA-92-8065-01 17 39888487 39888487 C T HAP1 Missense_Mutation p.E237K 0.30 tolerated(0.06) benign(0.135) TCGA-92-8065-01 17 4074103 4074103 G C ANKFY1 Silent p.V1106V 0.20 TCGA-92-8065-01 17 5009765 5009765 C T ZNF232 Missense_Mutation p.G230E 0.28 tolerated(0.28) benign(0) TCGA-92-8065-01 17 55184050 55184050 G A AKAP1 Missense_Mutation p.E409K 0.43 tolerated(0.69) benign(0.02) TCGA-92-8065-01 17 57196832 57196832 C G SKA2 Missense_Mutation p.E49Q 0.29 tolerated(0.16) probably_damaging(0.963) TCGA-92-8065-01 17 6982152 6982152 G A CLEC10A 5'UTR 0.23 TCGA-92-8065-01 17 73229235 73229235 G A NUP85 Missense_Mutation p.D533N 0.38 tolerated(0.17) benign(0.348) TCGA-92-8065-01 17 7574003 7574003 G A TP53 Nonsense_Mutation p.R342* 0.14 TCGA-92-8065-01 17 78162194 78162194 G C CARD14 Missense_Mutation p.E232Q 0.57 deleterious(0.01) possibly_damaging(0.776) TCGA-92-8065-01 18 43460050 43460050 G C EPG5 Nonsense_Mutation p.S1886* 0.29 TCGA-92-8065-01 18 55027352 55027352 C A ST8SIA3 Missense_Mutation p.N329K 0.19 possibly_damaging(0.6) TCGA-92-8065-01 18 56202502 56202502 T G ALPK2 Missense_Mutation p.E1639D 0.18 tolerated(0.07) benign(0.149) TCGA-92-8065-01 19 12060434 12060434 G C ZNF700 Missense_Mutation p.G532A 0.39 deleterious(0.03) probably_damaging(0.982) TCGA-92-8065-01 19 12257014 12257014 C T ZNF625 Missense_Mutation p.E73K 0.39 tolerated(0.14) probably_damaging(0.953) TCGA-92-8065-01 19 12384294 12384294 G A ZNF44 Missense_Mutation p.S307F 0.31 deleterious(0.01) benign(0.097) TCGA-92-8065-01 19 13054408 13054408 G A CALR Missense_Mutation p.E340K 0.06 tolerated(0.74) benign(0.008) TCGA-92-8065-01 19 13411455 13411455 C G CACNA1A Missense_Mutation p.E730Q 0.47 probably_damaging(0.969) TCGA-92-8065-01 19 14090264 14090264 G C RFX1 Missense_Mutation p.Q277E 0.25 deleterious(0.05) benign(0.401) TCGA-92-8065-01 19 15079305 15079305 C G SLC1A6 Missense_Mutation p.D120H 0.35 deleterious(0) possibly_damaging(0.888) TCGA-92-8065-01 19 17326646 17326646 G C USE1 Silent p.L46L 0.16 TCGA-92-8065-01 19 17337537 17337537 C T OCEL1 Silent p.H35H 0.13 TCGA-92-8065-01 19 19616204 19616204 C T GATAD2A Missense_Mutation p.S608L 0.21 deleterious(0) probably_damaging(0.932) TCGA-92-8065-01 19 22155975 22155975 C A ZNF208 Missense_Mutation p.V621F 0.16 tolerated(0.4) benign(0) TCGA-92-8065-01 19 23578201 23578201 G A ZNF91 5'UTR 0.23 TCGA-92-8065-01 19 2934246 2934246 C G ZNF77 Missense_Mutation p.E293D 0.33 tolerated(0.06) benign(0.027) TCGA-92-8065-01 19 42813779 42813779 G C PRR19 Missense_Mutation p.E15Q 0.28 tolerated(0.21) probably_damaging(0.998) TCGA-92-8065-01 19 44536258 44536258 C A ZNF222 Missense_Mutation p.S184Y 0.24 deleterious(0.01) probably_damaging(1) TCGA-92-8065-01 19 45579542 45579542 G A ZNF296 Silent p.L30L 0.25 TCGA-92-8065-01 19 47673177 47673177 C T SAE1 Nonsense_Mutation p.Q244* 0.24 TCGA-92-8065-01 19 47951425 47951425 G A SLC8A2 Silent p.D468D 0.25 TCGA-92-8065-01 19 49714817 49714817 C T TRPM4 3'UTR 0.29 TCGA-92-8065-01 19 49994204 49994204 C T RPL13A Intron 0.19 TCGA-92-8065-01 19 50101049 50101049 C T PRR12 Missense_Mutation p.R1153W 0.38 possibly_damaging(0.835) TCGA-92-8065-01 19 51994868 51994868 C T SIGLEC12 3'UTR 0.15 TCGA-92-8065-01 19 52877614 52877614 C A ZNF880 Missense_Mutation p.L68M 0.38 tolerated(0.11) possibly_damaging(0.83) TCGA-92-8065-01 19 53578362 53578362 C T ZNF160 Silent p.R30R 0.19 TCGA-92-8065-01 19 53770704 53770704 C G VN1R4 Missense_Mutation p.R72T 0.23 deleterious(0.03) benign(0.012) TCGA-92-8065-01 19 54561745 54561745 G A VSTM1 Missense_Mutation p.T57I 0.25 deleterious(0) probably_damaging(0.998) TCGA-92-8065-01 19 55246751 55246751 G A KIR3DL3 Silent p.G327G 0.18 TCGA-92-8065-01 19 58084391 58084391 C G ZNF416 Missense_Mutation p.G294A 0.21 deleterious(0) probably_damaging(0.985) TCGA-92-8065-01 19 58153090 58153090 C T ZNF211 Silent p.L477L 0.28 TCGA-92-8065-01 19 5867065 5867065 C G FUT5 Missense_Mutation p.Q224H 0.22 tolerated(0.13) benign(0.012) TCGA-92-8065-01 19 6393087 6393087 G A GTF2F1 5'UTR 0.29 TCGA-92-8065-01 19 6707818 6707818 C G C3 Missense_Mutation p.Q656H 0.30 tolerated(0.15) benign(0.002) TCGA-92-8065-01 19 7600413 7600413 C T PNPLA6 5'UTR 0.18 TCGA-92-8065-01 19 9067796 9067796 C T MUC16 Silent p.V6550V 0.24 TCGA-92-8065-01 19 9296961 9296961 C T OR7D2 Silent p.F168F 0.39 TCGA-92-8065-01 1 101186200 101186200 C G VCAM1 Missense_Mutation p.S78C 0.27 deleterious(0) probably_damaging(1) TCGA-92-8065-01 1 109477397 109477397 G C CLCC1 Silent p.L517L 0.22 TCGA-92-8065-01 1 116247894 116247894 C G CASQ2 Missense_Mutation p.E286D 0.24 tolerated(0.06) possibly_damaging(0.456) TCGA-92-8065-01 1 1246056 1246056 C T PUSL1 Silent p.F229F 0.17 TCGA-92-8065-01 1 14108636 14108636 C T PRDM2 Missense_Mutation p.A1449V 0.23 unknown(0) TCGA-92-8065-01 1 145209118 145209118 C T RP11-458D21.5 5'Flank 0.23 TCGA-92-8065-01 1 148009513 148009513 G A NBPF14 Silent p.L604L 0.04 TCGA-92-8065-01 1 150550894 150550894 G A MCL1 Silent p.F254F 0.45 TCGA-92-8065-01 1 153631627 153631627 G C SNAPIN Missense_Mutation p.E53Q 0.24 deleterious(0.04) possibly_damaging(0.891) TCGA-92-8065-01 1 154931827 154931827 G A PYGO2 Nonsense_Mutation p.Q217* 0.17 TCGA-92-8065-01 1 156254972 156254972 C T TMEM79 Intron 0.55 TCGA-92-8065-01 1 157668264 157668264 C T FCRL3 Missense_Mutation p.D70N 0.16 tolerated(0.97) benign(0.002) TCGA-92-8065-01 1 158911967 158911967 G A PYHIN1 Silent p.K260K 0.27 TCGA-92-8065-01 1 17296292 17296292 G A CROCC Missense_Mutation p.A1772T 0.30 possibly_damaging(0.682) TCGA-92-8065-01 1 186143682 186143682 G T HMCN1 Missense_Mutation p.R5284I 0.37 probably_damaging(0.991) TCGA-92-8065-01 1 186301368 186301368 G C TPR Missense_Mutation p.L1855V 0.19 benign(0.364) TCGA-92-8065-01 1 227843260 227843260 G C ZNF678 Missense_Mutation p.E437Q 0.20 tolerated(0.07) possibly_damaging(0.585) TCGA-92-8065-01 1 240255655 240255655 G A FMN2 Silent p.K82K 0.41 TCGA-92-8065-01 1 247921218 247921218 G A OR1C1 Missense_Mutation p.A164V 0.13 tolerated(0.19) benign(0.225) TCGA-92-8065-01 1 248512675 248512675 C G OR14C36 Missense_Mutation p.S200C 0.40 tolerated(0.19) benign(0.208) TCGA-92-8065-01 1 2524344 2524344 G C MMEL1 Missense_Mutation p.H643Q 0.26 tolerated(0.19) benign(0.363) TCGA-92-8065-01 1 27675577 27675577 G A SYTL1 Missense_Mutation p.D156N 0.20 tolerated(0.09) benign(0.007) TCGA-92-8065-01 1 33237197 33237197 C T KIAA1522 Missense_Mutation p.S806L 0.24 tolerated_low_confidence(0.17) benign(0.255) TCGA-92-8065-01 1 43282128 43282128 C T CCDC23 Missense_Mutation p.E30K 0.04 tolerated(0.07) benign(0.004) TCGA-92-8065-01 1 47746382 47746382 C A STIL Missense_Mutation p.R583I 0.23 deleterious(0.02) possibly_damaging(0.739) TCGA-92-8065-01 1 53373601 53373601 C G ECHDC2 Missense_Mutation p.Q101H 0.33 tolerated(0.07) possibly_damaging(0.778) TCGA-92-8065-01 1 62190773 62190773 G C TM2D1 Missense_Mutation p.S69C 0.37 tolerated_low_confidence(0.24) benign(0.003) TCGA-92-8065-01 1 62677061 62677061 C A L1TD1 3'UTR 0.23 TCGA-92-8065-01 1 62677114 62677114 G T L1TD1 3'UTR 0.23 TCGA-92-8065-01 1 66074525 66074525 G C LEPR Missense_Mutation p.E565Q 0.25 tolerated(0.09) benign(0.146) TCGA-92-8065-01 1 78398996 78398996 T C NEXN Silent p.Y361Y 0.28 TCGA-92-8065-01 1 78399125 78399125 G A NEXN Silent p.E404E 0.17 TCGA-92-8065-01 1 906117 906117 G C PLEKHN1 Missense_Mutation p.E155Q 0.23 deleterious(0.03) probably_damaging(0.924) TCGA-92-8065-01 1 95699815 95699815 C G RWDD3 Missense_Mutation p.S10W 0.50 deleterious(0) probably_damaging(0.936) TCGA-92-8065-01 20 2635209 2635209 G A NOP56 Missense_Mutation p.E120K 0.04 deleterious(0) possibly_damaging(0.465) TCGA-92-8065-01 20 30458384 30458384 C T DUSP15 5'UTR 0.20 TCGA-92-8065-01 20 35154334 35154334 C T DLGAP4 Silent p.I892I 0.25 TCGA-92-8065-01 20 37657080 37657080 G C DHX35 Silent p.L607L 0.19 TCGA-92-8065-01 20 40084547 40084547 C T CHD6 Missense_Mutation p.E968K 0.20 deleterious(0) probably_damaging(0.943) TCGA-92-8065-01 20 44462989 44462989 C G SNX21 Silent p.L57L 0.25 TCGA-92-8065-01 20 45633608 45633608 G A EYA2 Silent p.Q61Q 0.43 TCGA-92-8065-01 20 54824260 54824260 G C MC3R Missense_Mutation p.D121H 0.35 deleterious(0) probably_damaging(1) TCGA-92-8065-01 20 55918404 55918404 T C SPO11 Missense_Mutation p.I360T 0.44 tolerated(0.07) benign(0.004) TCGA-92-8065-01 20 58467254 58467254 C T SYCP2 Missense_Mutation p.E719K 0.16 tolerated(0.05) possibly_damaging(0.74) TCGA-92-8065-01 20 62324181 62324181 G A RTEL1 Silent p.Q916Q 0.17 TCGA-92-8065-01 20 62701923 62701923 G T TCEA2 Missense_Mutation p.G252C 0.14 deleterious(0) probably_damaging(1) TCGA-92-8065-01 20 8705378 8705378 G A PLCB1 Missense_Mutation p.E553K 0.22 tolerated(1) benign(0.056) TCGA-92-8065-01 21 11038751 11038751 G A BAGE2 RNA 0.04 TCGA-92-8065-01 21 30698746 30698746 G C BACH1 Missense_Mutation p.D201H 0.29 deleterious(0) probably_damaging(0.998) TCGA-92-8065-01 21 40800383 40800383 C T LCA5L Missense_Mutation p.E13K 0.22 deleterious(0.03) possibly_damaging(0.713) TCGA-92-8065-01 21 47841974 47841974 C G PCNT Missense_Mutation p.S2372C 0.21 possibly_damaging(0.869) TCGA-92-8065-01 22 30415898 30415898 G A MTMR3 Silent p.L750L 0.23 TCGA-92-8065-01 22 41985812 41985812 C A PMM1 5'UTR 0.33 TCGA-92-8065-01 2 113788694 113788694 G C IL36B Missense_Mutation p.R18G 0.27 tolerated_low_confidence(0.09) benign(0.152) TCGA-92-8065-01 2 11922414 11922414 G T LPIN1 Nonsense_Mutation p.E398* 0.17 TCGA-92-8065-01 2 11922415 11922415 A G LPIN1 Missense_Mutation p.E398G 0.18 tolerated(0.18) benign(0.029) TCGA-92-8065-01 2 128408957 128408957 C T GPR17 Silent p.I244I 0.27 TCGA-92-8065-01 2 128414979 128414979 C T LIMS2 Missense_Mutation p.E81K 0.14 deleterious(0.02) possibly_damaging(0.547) TCGA-92-8065-01 2 136528237 136528237 G C UBXN4 Missense_Mutation p.E252Q 0.29 tolerated(0.05) possibly_damaging(0.796) TCGA-92-8065-01 2 136579686 136579686 G T LCT Intron 0.16 TCGA-92-8065-01 2 179658255 179658255 G A TTN Missense_Mutation p.A471V 0.26 TCGA-92-8065-01 2 188361729 188361729 G A TFPI Silent p.I66I 0.24 TCGA-92-8065-01 2 191550261 191550261 G A NAB1 Silent p.E385E 0.14 TCGA-92-8065-01 2 233244944 233244944 G A ALPP Missense_Mutation p.D236N 0.15 deleterious(0.01) probably_damaging(1) TCGA-92-8065-01 2 27301978 27301978 G C EMILIN1 Silent p.L15L 0.18 TCGA-92-8065-01 2 74328110 74328110 G C TET3 Missense_Mutation p.E1264Q 0.31 deleterious(0) probably_damaging(1) TCGA-92-8065-01 2 79255357 79255357 T C REG3G Silent p.Y161Y 0.20 TCGA-92-8065-01 2 86276309 86276309 C T POLR1A Missense_Mutation p.E817K 0.21 tolerated(0.74) benign(0.003) TCGA-92-8065-01 2 97847523 97847523 T G ANKRD36 Silent p.S610S 0.17 TCGA-92-8065-01 3 101378787 101378787 G A ZBTB11 Missense_Mutation p.S629L 0.18 tolerated(0.37) benign(0.003) TCGA-92-8065-01 3 108773730 108773730 C T MORC1 Splice_Site p.X392_splice 0.22 TCGA-92-8065-01 3 122160899 122160899 C G KPNA1 Missense_Mutation p.D328H 0.14 deleterious(0) probably_damaging(1) TCGA-92-8065-01 3 124456453 124456453 G A UMPS Missense_Mutation p.E117K 0.18 deleterious(0.02) benign(0.091) TCGA-92-8065-01 3 133670079 133670079 G A SLCO2A1 Silent p.F278F 0.35 TCGA-92-8065-01 3 142524873 142524873 G A TRPC1 Silent p.K726K 0.09 TCGA-92-8065-01 3 14770029 14770029 C T C3orf20 Missense_Mutation p.R592W 0.09 tolerated(0.25) benign(0.134) TCGA-92-8065-01 3 153994568 153994568 G A DHX36 Nonsense_Mutation p.Q937* 0.08 TCGA-92-8065-01 3 159713301 159713301 G A IL12A Silent p.R239R 0.13 TCGA-92-8065-01 3 164908516 164908516 C G SLITRK3 Missense_Mutation p.E35Q 0.16 deleterious(0.02) benign(0.272) TCGA-92-8065-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.29 deleterious(0.04) probably_damaging(0.96) TCGA-92-8065-01 3 183524877 183524877 G A YEATS2 Silent p.Q1336Q 0.15 TCGA-92-8065-01 3 183885712 183885712 C T DVL3 Missense_Mutation p.H453Y 0.12 deleterious(0.05) probably_damaging(0.977) TCGA-92-8065-01 3 184019705 184019705 C G PSMD2 Missense_Mutation p.L184V 0.18 deleterious(0.02) probably_damaging(0.953) TCGA-92-8065-01 3 184070590 184070590 C T CLCN2 Missense_Mutation p.E718K 0.11 tolerated(0.35) benign(0.001) TCGA-92-8065-01 3 184071972 184071972 C T CLCN2 Silent p.Q546Q 0.10 TCGA-92-8065-01 3 190126141 190126141 G T CLDN16 Missense_Mutation p.D211Y 0.12 deleterious(0) probably_damaging(0.995) TCGA-92-8065-01 3 192516720 192516720 G C MB21D2 Missense_Mutation p.Q311E 0.12 tolerated(0.19) possibly_damaging(0.569) TCGA-92-8065-01 3 197497048 197497048 C G FYTTD1 Missense_Mutation p.L144V 0.08 tolerated(0.5) possibly_damaging(0.497) TCGA-92-8065-01 3 45817451 45817451 C T SLC6A20 Silent p.L128L 0.35 TCGA-92-8065-01 3 47823175 47823175 G A SMARCC1 Missense_Mutation p.P38L 0.11 deleterious(0.02) benign(0.433) TCGA-92-8065-01 3 48717021 48717021 C T NCKIPSD Silent p.Q492Q 0.32 TCGA-92-8065-01 4 160274844 160274844 C A RAPGEF2 Missense_Mutation p.L1272I 0.36 tolerated_low_confidence(0.09) benign(0.009) TCGA-92-8065-01 4 55958791 55958791 G A KDR Missense_Mutation p.S1021L 0.39 deleterious(0) probably_damaging(1) TCGA-92-8065-01 4 55991470 55991470 C G KDR 5'UTR 0.38 TCGA-92-8065-01 5 101627097 101627097 G C SLCO4C1 Nonsense_Mutation p.S190* 0.18 TCGA-92-8065-01 5 121759072 121759072 A C SNCAIP Missense_Mutation p.K214Q 0.17 deleterious(0.03) possibly_damaging(0.696) TCGA-92-8065-01 5 137895639 137895639 G A HSPA9 Missense_Mutation p.P442S 0.35 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-92-8065-01 5 137895652 137895652 G T HSPA9 Silent p.L437L 0.34 TCGA-92-8065-01 5 137895730 137895730 G C HSPA9 Silent p.V411V 0.34 TCGA-92-8065-01 5 139743975 139743975 C T SLC4A9 Silent p.F496F 0.27 TCGA-92-8065-01 5 139930350 139930350 C A SRA1 Nonsense_Mutation p.E216* 0.18 TCGA-92-8065-01 5 139930428 139930428 C G SRA1 Missense_Mutation p.E190Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-92-8065-01 5 140242247 140242247 C T AC005609.1 3'UTR 0.26 TCGA-92-8065-01 5 140762880 140762880 A G PCDHGA7 Missense_Mutation p.I138M 0.21 tolerated_low_confidence(0.1) benign(0.026) TCGA-92-8065-01 5 140802597 140802597 G C PCDHGA11 Missense_Mutation p.Q601H 0.31 deleterious_low_confidence(0) possibly_damaging(0.749) TCGA-92-8065-01 5 141051234 141051234 G A ARAP3 Missense_Mutation p.T586I 0.28 deleterious(0.02) benign(0.281) TCGA-92-8065-01 5 141059694 141059694 G A ARAP3 Silent p.L120L 0.23 TCGA-92-8065-01 5 147443604 147443604 C T SPINK5 5'UTR 0.18 TCGA-92-8065-01 5 150924531 150924531 G A FAT2 Nonsense_Mutation p.Q2053* 0.19 TCGA-92-8065-01 5 150924818 150924818 G C FAT2 Missense_Mutation p.S1957C 0.32 possibly_damaging(0.469) TCGA-92-8065-01 5 150932891 150932891 C G FAT2 Missense_Mutation p.E1335Q 0.20 probably_damaging(0.978) TCGA-92-8065-01 5 154395250 154395250 G A KIF4B Missense_Mutation p.D611N 0.18 tolerated(0.16) benign(0.02) TCGA-92-8065-01 5 156376706 156376706 C A TIMD4 Missense_Mutation p.S239I 0.25 deleterious(0.03) possibly_damaging(0.881) TCGA-92-8065-01 5 157216507 157216507 G A CLINT1 Silent p.V483V 0.14 TCGA-92-8065-01 5 161530985 161530985 C T GABRG2 Missense_Mutation p.S281L 0.24 deleterious(0) benign(0.272) TCGA-92-8065-01 5 180326343 180326343 C A BTNL8 Silent p.L11L 0.33 TCGA-92-8065-01 5 55252021 55252021 C T IL6ST Missense_Mutation p.E367K 0.30 tolerated(0.23) benign(0.097) TCGA-92-8065-01 5 70828138 70828138 G C BDP1 Missense_Mutation p.E1926Q 0.23 deleterious(0.01) probably_damaging(0.93) TCGA-92-8065-01 5 74680478 74680478 G C COL4A3BP Missense_Mutation p.Q621E 0.32 deleterious(0.01) possibly_damaging(0.523) TCGA-92-8065-01 5 95757581 95757581 C T PCSK1 Intron 0.18 TCGA-92-8065-01 5 95757589 95757589 C T PCSK1 Silent p.E205E 0.20 TCGA-92-8065-01 5 9630107 9630107 G T TAS2R1 Missense_Mutation p.A13E 0.16 tolerated(0.06) possibly_damaging(0.516) TCGA-92-8065-01 6 109471403 109471403 C G CEP57L1 Silent p.L141L 0.28 TCGA-92-8065-01 6 114181679 114181679 C T MARCKS Missense_Mutation p.S308L 0.27 tolerated_low_confidence(0.28) unknown(0) TCGA-92-8065-01 6 116892745 116892745 G A RWDD1 5'UTR 0.20 TCGA-92-8065-01 6 134498885 134498885 G T SGK1 Intron 0.44 TCGA-92-8065-01 6 152529337 152529337 C A SYNE1 Nonsense_Mutation p.E7532* 0.20 TCGA-92-8065-01 6 157527499 157527499 G C ARID1B Missense_Mutation p.E1742Q 0.15 possibly_damaging(0.51) TCGA-92-8065-01 6 158516937 158516937 C T SYNJ2 Silent p.F1344F 0.29 TCGA-92-8065-01 6 158517127 158517127 C G SYNJ2 Missense_Mutation p.L1408V 0.27 tolerated_low_confidence(0.14) benign(0.03) TCGA-92-8065-01 6 161771162 161771162 A C PARK2 Missense_Mutation p.V456G 0.11 tolerated(0.05) benign(0.122) TCGA-92-8065-01 6 26250551 26250551 C T HIST1H3F Missense_Mutation p.E95K 0.25 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-92-8065-01 6 27776084 27776084 C T HIST1H2AI Missense_Mutation p.R33C 0.16 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-92-8065-01 6 39162376 39162376 C G KCNK5 Silent p.V153V 0.23 TCGA-92-8065-01 6 46801220 46801220 G C MEP1A Silent p.R518R 0.21 TCGA-92-8065-01 6 52400608 52400608 G A TRAM2 Nonsense_Mutation p.Q53* 0.21 TCGA-92-8065-01 6 57012783 57012783 C G ZNF451 Missense_Mutation p.H634D 0.17 deleterious(0) probably_damaging(0.997) TCGA-92-8065-01 6 71009870 71009870 G C COL9A1 Missense_Mutation p.L59V 0.27 unknown(0) TCGA-92-8065-01 6 71566572 71566572 C G SMAP1 Missense_Mutation p.S267C 0.20 deleterious(0) benign(0.008) TCGA-92-8065-01 6 84865048 84865048 C T KIAA1009 Missense_Mutation p.R988H 0.15 deleterious(0) probably_damaging(1) TCGA-92-8065-01 6 87966912 87966912 C T ZNF292 Missense_Mutation p.P1189S 0.17 tolerated(0.74) benign(0.002) TCGA-92-8065-01 6 90576281 90576281 C T CASP8AP2 RNA 0.14 TCGA-92-8065-01 6 99771371 99771371 C G FAXC Missense_Mutation p.E258Q 0.23 deleterious(0.03) possibly_damaging(0.714) TCGA-92-8065-01 7 100162659 100162659 C G AGFG2 3'UTR 0.24 TCGA-92-8065-01 7 100371421 100371421 C G ZAN Missense_Mutation p.F1904L 0.27 unknown(0) TCGA-92-8065-01 7 122338388 122338388 C T RNF133 Silent p.V195V 0.38 TCGA-92-8065-01 7 134889055 134889055 G A WDR91 Nonsense_Mutation p.Q286* 0.20 TCGA-92-8065-01 7 138437508 138437508 G A ATP6V0A4 Silent p.I297I 0.30 TCGA-92-8065-01 7 139316464 139316464 C G HIPK2 Missense_Mutation p.E371Q 0.45 deleterious(0) probably_damaging(0.998) TCGA-92-8065-01 7 152008972 152008972 G C KMT2C Nonsense_Mutation p.S217* 0.29 TCGA-92-8065-01 7 18535900 18535900 G A HDAC9 5'Flank 0.09 TCGA-92-8065-01 7 23728895 23728895 C G FAM221A Missense_Mutation p.Q83E 0.14 tolerated(0.11) possibly_damaging(0.891) TCGA-92-8065-01 7 24910465 24910465 C G OSBPL3 Splice_Site p.X90_splice 0.31 TCGA-92-8065-01 7 27147667 27147667 C T HOXA3 Missense_Mutation p.G400D 0.14 deleterious(0.03) probably_damaging(0.952) TCGA-92-8065-01 7 30668173 30668173 C T GARS Intron 0.26 TCGA-92-8065-01 7 31617897 31617897 C G CCDC129 Nonsense_Mutation p.S366* 0.18 TCGA-92-8065-01 7 47898440 47898440 G A PKD1L1 Missense_Mutation p.A1398V 0.14 tolerated(0.33) benign(0.007) TCGA-92-8065-01 7 4831004 4831004 C T AP5Z1 Silent p.L804L 0.67 TCGA-92-8065-01 7 75401290 75401290 G A CCL26 Silent p.F35F 0.22 TCGA-92-8065-01 7 82579309 82579309 C A PCLO Missense_Mutation p.G3532V 0.14 unknown(0) TCGA-92-8065-01 7 82585187 82585187 G C PCLO Missense_Mutation p.D1694E 0.12 unknown(0) TCGA-92-8065-01 7 8475305 8475305 C G NXPH1 5'UTR 0.19 TCGA-92-8065-01 7 98601889 98601889 G A TRRAP Silent p.L3448L 0.29 TCGA-92-8065-01 8 120942092 120942092 C T DEPTOR Silent p.L113L 0.38 TCGA-92-8065-01 8 124440161 124440161 C T WDYHV1 Intron 0.14 TCGA-92-8065-01 8 133627334 133627334 G A LRRC6 Silent p.F308F 0.44 TCGA-92-8065-01 8 142228335 142228335 G C SLC45A4 Missense_Mutation p.H417Q 0.05 tolerated(0.31) benign(0) TCGA-92-8065-01 8 143694705 143694705 G A ARC Nonsense_Mutation p.Q310* 0.17 TCGA-92-8065-01 8 145637942 145637942 C A SLC39A4 Nonsense_Mutation p.E642* 0.13 TCGA-92-8065-01 8 145689362 145689362 C A CYHR1 Intron 0.19 TCGA-92-8065-01 8 22012951 22012951 C T LGI3 Missense_Mutation p.E78K 0.24 tolerated(0.08) benign(0.275) TCGA-92-8065-01 8 22013876 22013876 C T LGI3 Silent p.R60R 0.16 TCGA-92-8065-01 8 29203047 29203047 C T DUSP4 Intron 0.20 TCGA-92-8065-01 8 30890221 30890221 G T PURG Missense_Mutation p.S26R 0.33 tolerated_low_confidence(0.16) possibly_damaging(0.766) TCGA-92-8065-01 8 55060004 55060004 C A MRPL15 Missense_Mutation p.P206T 0.15 deleterious(0) probably_damaging(0.996) TCGA-92-8065-01 8 55539482 55539482 G C RP1 Missense_Mutation p.D1014H 0.03 tolerated(0.28) probably_damaging(0.917) TCGA-92-8065-01 8 67514715 67514715 C G MYBL1 Missense_Mutation p.E22Q 0.22 deleterious(0.02) probably_damaging(0.917) TCGA-92-8065-01 8 70501346 70501346 C G SULF1 Missense_Mutation p.S235C 0.28 deleterious(0) probably_damaging(0.967) TCGA-92-8065-01 8 74005192 74005192 G A SBSPON Silent p.F37F 0.17 TCGA-92-8065-01 8 85799981 85799981 G A RALYL Silent p.E289E 0.09 TCGA-92-8065-01 9 127563902 127563902 C T OLFML2A Silent p.Y293Y 0.37 TCGA-92-8065-01 9 13192144 13192144 C T MPDZ Missense_Mutation p.E652K 0.25 tolerated(0.24) benign(0.138) TCGA-92-8065-01 9 137779137 137779137 C T FCN2 Missense_Mutation p.S273L 0.72 deleterious(0) probably_damaging(0.988) TCGA-92-8065-01 9 15474131 15474131 C T PSIP1 Missense_Mutation p.R245K 0.37 tolerated(0.39) benign(0.002) TCGA-92-8065-01 9 15591485 15591485 G A CCDC171 Missense_Mutation p.M158I 0.15 tolerated(1) benign(0) TCGA-92-8065-01 9 35059536 35059536 C A VCP Missense_Mutation p.R653L 0.07 deleterious(0.01) probably_damaging(1) TCGA-92-8065-01 9 37512545 37512545 C T FBXO10 Silent p.%3D 0.33 TCGA-92-8065-01 9 390495 390495 C T DOCK8 Nonsense_Mutation p.Q967* 0.25 TCGA-92-8065-01 9 67968313 67968313 G T ANKRD20A1 Silent p.V624V 0.30 TCGA-92-8065-01 9 86495337 86495337 C G KIF27 Missense_Mutation p.E840Q 0.36 deleterious(0.03) possibly_damaging(0.611) TCGA-92-8065-01 9 98690358 98690358 C T ERCC6L2 Intron 0.34 TCGA-92-8065-01 X 100629582 100629582 A T BTK Missense_Mutation p.I61N 0.26 deleterious(0) benign(0.321) TCGA-92-8065-01 X 102005010 102005010 G A BHLHB9 Missense_Mutation p.E363K 0.20 deleterious(0.03) benign(0.139) TCGA-92-8065-01 X 107037522 107037522 C T NCBP2L Silent p.F24F 0.19 TCGA-92-8065-01 X 123587189 123587189 G C TENM1 Missense_Mutation p.Q1368E 0.15 tolerated(0.28) benign(0.005) TCGA-92-8065-01 X 134989946 134989946 G C SAGE1 Missense_Mutation p.G369R 0.27 deleterious(0.01) possibly_damaging(0.657) TCGA-92-8065-01 X 137715050 137715050 C G FGF13 Silent p.L243L 0.23 TCGA-92-8065-01 X 148037898 148037898 G A AFF2 Missense_Mutation p.E775K 0.22 deleterious(0) benign(0.371) TCGA-92-8065-01 X 30260862 30260862 C G MAGEB4 Missense_Mutation p.L204V 0.23 tolerated(0.62) possibly_damaging(0.889) TCGA-92-8065-01 X 31187573 31187573 C G DMD Missense_Mutation p.E3514Q 0.22 possibly_damaging(0.607) TCGA-92-8065-01 X 31187641 31187641 G A DMD Missense_Mutation p.P3491L 0.12 possibly_damaging(0.851) TCGA-92-8065-01 X 39923194 39923194 C T BCOR Missense_Mutation p.E1172K 0.23 deleterious(0.02) probably_damaging(0.991) TCGA-92-8065-01 X 48372644 48372644 G A PORCN Missense_Mutation p.E246K 0.19 deleterious(0.04) probably_damaging(0.934) TCGA-92-8065-01 X 49854975 49854975 G C CLCN5 Missense_Mutation p.K649N 0.27 tolerated(0.27) benign(0.004) TCGA-92-8065-01 X 51640654 51640654 G C MAGED1 Missense_Mutation p.D556H 0.23 tolerated_low_confidence(0.07) probably_damaging(1) TCGA-92-8065-01 X 54143206 54143206 T A FAM120C Missense_Mutation p.E695V 0.16 deleterious(0) probably_damaging(0.972) TCGA-92-8065-01 X 54162936 54162936 G A FAM120C Missense_Mutation p.P416S 0.17 tolerated(0.08) benign(0.046) TCGA-92-8065-01 X 69479142 69479142 G T P2RY4 Silent p.V111V 0.20 TCGA-92-8065-01 X 70340867 70340867 G C MED12 Missense_Mutation p.K200N 0.25 probably_damaging(0.999) TCGA-92-8065-01 X 70340874 70340874 G A MED12 Missense_Mutation p.E203K 0.25 benign(0.248) TCGA-92-8065-01 X 77130991 77130991 G A MAGT1 Missense_Mutation p.P101L 0.23 deleterious(0) probably_damaging(0.921) TCGA-92-8065-01 X 82763397 82763397 C G POU3F4 Missense_Mutation p.S22C 0.30 deleterious(0.02) possibly_damaging(0.894) TCGA-92-8065-01 X 82763993 82763993 A T POU3F4 Missense_Mutation p.T221S 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-92-8065-01 X 99942070 99942070 G C SYTL4 Missense_Mutation p.S393C 0.33 tolerated(0.11) probably_damaging(1) TCGA-94-7033-01 10 106160587 106160587 C G CCDC147 Silent p.L655L 0.29 TCGA-94-7033-01 10 124896893 124896893 C T HMX3 Silent p.F240F 0.24 TCGA-94-7033-01 10 124896894 124896894 C T HMX3 Nonsense_Mutation p.Q241* 0.24 TCGA-94-7033-01 10 124896899 124896899 C T HMX3 Silent p.L242L 0.25 TCGA-94-7033-01 10 13251218 13251218 T - MCM10 Intron 0.17 TCGA-94-7033-01 10 27536515 27536515 C T RP11-85G18.6 Intron 0.23 TCGA-94-7033-01 10 89653815 89653815 C G PTEN Missense_Mutation p.P38R 0.37 deleterious(0.02) probably_damaging(0.994) TCGA-94-7033-01 10 98762125 98762125 A G SLIT1 Missense_Mutation p.C1386R 0.16 deleterious(0) possibly_damaging(0.777) TCGA-94-7033-01 11 100064349 100064349 C G CNTN5 Missense_Mutation p.P613R 0.25 tolerated(0.3) probably_damaging(0.982) TCGA-94-7033-01 11 10795605 10795605 C G CTR9 Missense_Mutation p.T925S 0.13 tolerated(1) benign(0) TCGA-94-7033-01 11 121028742 121028742 G C TECTA Missense_Mutation p.G1500R 0.11 deleterious(0) probably_damaging(0.999) TCGA-94-7033-01 11 128840317 128840317 C T ARHGAP32 Silent p.V1583V 0.18 TCGA-94-7033-01 11 55761240 55761240 G C OR5F1 Missense_Mutation p.L288V 0.05 tolerated(0.05) benign(0.117) TCGA-94-7033-01 11 56128208 56128216 TGTATTCTC - OR8J1 In_Frame_Del p.F164_V166del 0.25 TCGA-94-7033-01 11 58980367 58980367 C T MPEG1 5'UTR 0.27 TCGA-94-7033-01 11 62292053 62292053 G T AHNAK Missense_Mutation p.P3279Q 0.15 probably_damaging(1) TCGA-94-7033-01 11 65350931 65350931 C G EHBP1L1 Missense_Mutation p.Q930E 0.20 tolerated(1) benign(0) TCGA-94-7033-01 11 65687483 65687483 G A DRAP1 Silent p.R60R 0.17 TCGA-94-7033-01 11 65789019 65789019 C G CATSPER1 Missense_Mutation p.V547L 0.14 deleterious(0) probably_damaging(0.954) TCGA-94-7033-01 11 66616472 66616489 CATCTTCATGGCACTGAG - PC In_Frame_Del p.L1140_M1145del 0.10 TCGA-94-7033-01 11 67430804 67430804 C G ALDH3B2 Missense_Mutation p.C347S 0.19 deleterious(0.04) benign(0.074) TCGA-94-7033-01 11 7078984 7078984 T C NLRP14 Missense_Mutation p.F790L 0.18 tolerated(0.41) benign(0.389) TCGA-94-7033-01 11 82895883 82895883 A G PCF11 Missense_Mutation p.I1539V 0.24 tolerated(1) benign(0) TCGA-94-7033-01 12 121131965 121131965 C T MLEC Missense_Mutation p.R103W 0.28 deleterious(0) probably_damaging(1) TCGA-94-7033-01 12 2613649 2613649 T G CACNA1C Intron 0.26 TCGA-94-7033-01 12 29469889 29469889 C G FAR2 Missense_Mutation p.H357Q 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-94-7033-01 12 43858525 43858525 C T ADAMTS20 Missense_Mutation p.G460R 0.14 deleterious(0) probably_damaging(0.972) TCGA-94-7033-01 12 48107134 48107134 C G ENDOU Missense_Mutation p.L263F 0.22 deleterious(0.03) probably_damaging(0.942) TCGA-94-7033-01 12 51759274 51759274 C T GALNT6 Missense_Mutation p.A252T 0.18 deleterious(0) probably_damaging(1) TCGA-94-7033-01 12 52314616 52314616 G A ACVRL1 Missense_Mutation p.R484Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-94-7033-01 12 6181546 6181546 C T VWF Missense_Mutation p.G354R 0.21 deleterious(0) probably_damaging(0.988) TCGA-94-7033-01 13 114083385 114083385 C T ADPRHL1 Silent p.T176T 0.15 TCGA-94-7033-01 13 32905061 32905061 G T BRCA2 Silent p.V229V 0.42 TCGA-94-7033-01 13 32905062 32905062 A T BRCA2 Nonsense_Mutation p.K230* 0.42 TCGA-94-7033-01 13 45147351 45147351 G T TSC22D1 Missense_Mutation p.P954T 0.35 tolerated(0.09) possibly_damaging(0.676) TCGA-94-7033-01 13 96665587 96665587 G A UGGT2 Silent p.L212L 0.35 TCGA-94-7033-01 14 23373507 23373507 G A RBM23 Missense_Mutation p.S298L 0.17 tolerated(0.1) benign(0.042) TCGA-94-7033-01 14 50581005 50581005 C G VCPKMT Missense_Mutation p.E190Q 0.21 tolerated(0.12) benign(0.363) TCGA-94-7033-01 14 64580227 64580227 G C SYNE2 Missense_Mutation p.E4260Q 0.38 probably_damaging(0.992) TCGA-94-7033-01 14 77987815 77987815 C G SPTLC2 Missense_Mutation p.L471F 0.27 deleterious(0.02) benign(0.41) TCGA-94-7033-01 14 78392197 78392197 C T ADCK1 Nonsense_Mutation p.R367* 0.13 TCGA-94-7033-01 14 93761184 93761184 G C BTBD7 Missense_Mutation p.S61C 0.10 deleterious(0.03) possibly_damaging(0.628) TCGA-94-7033-01 14 96794850 96794850 G A ATG2B Missense_Mutation p.S666L 0.19 tolerated(0.14) benign(0.079) TCGA-94-7033-01 15 43627308 43627308 G C ADAL Translation_Start_Site p.M1? 0.15 tolerated_low_confidence(0.06) benign(0.001) TCGA-94-7033-01 15 48062820 48062820 G A SEMA6D Missense_Mutation p.R687Q 0.23 tolerated(0.37) probably_damaging(0.991) TCGA-94-7033-01 15 53815415 53815415 C G WDR72 Missense_Mutation p.G1085R 0.11 deleterious_low_confidence(0.01) probably_damaging(0.953) TCGA-94-7033-01 15 58471441 58471441 G T AQP9 Missense_Mutation p.A204S 0.21 tolerated(0.33) benign(0.006) TCGA-94-7033-01 15 64962616 64962616 G C ZNF609 Missense_Mutation p.D349H 0.05 deleterious(0) probably_damaging(0.982) TCGA-94-7033-01 15 89381912 89381912 G C ACAN Missense_Mutation p.S30T 0.14 deleterious(0.01) unknown(0) TCGA-94-7033-01 16 20935348 20935348 C A LYRM1 Silent p.T93T 0.19 TCGA-94-7033-01 16 2259438 2259438 C G BRICD5 Silent p.L204L 0.25 TCGA-94-7033-01 16 3651029 3651029 G A SLX4 Missense_Mutation p.R372W 0.06 deleterious(0) probably_damaging(0.996) TCGA-94-7033-01 16 66946731 66946731 A G CDH16 Missense_Mutation p.V373A 0.14 deleterious(0) benign(0.4) TCGA-94-7033-01 16 67221032 67221032 C G EXOC3L1 Missense_Mutation p.M350I 0.26 deleterious(0) possibly_damaging(0.876) TCGA-94-7033-01 16 67680395 67680395 G A RLTPR Silent p.E147E 0.32 TCGA-94-7033-01 16 84218563 84218563 A C TAF1C Missense_Mutation p.L11W 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-94-7033-01 16 84229050 84229050 G C ADAD2 Silent p.L376L 0.30 TCGA-94-7033-01 16 88876863 88876863 G C APRT Missense_Mutation p.L97V 0.26 tolerated(1) benign(0.001) TCGA-94-7033-01 17 10348447 10348447 T G MYH4 Missense_Mutation p.E1771A 0.25 deleterious(0) probably_damaging(0.999) TCGA-94-7033-01 17 17131263 17131263 G - FLCN Frame_Shift_Del p.A64Qfs*66 0.24 TCGA-94-7033-01 17 2867354 2867354 C G RAP1GAP2 Missense_Mutation p.L162V 0.27 tolerated(0.09) benign(0.007) TCGA-94-7033-01 17 56293543 56293543 C T MKS1 Missense_Mutation p.R108H 0.31 tolerated(1) benign(0) TCGA-94-7033-01 17 72353221 72353221 T G BTBD17 Missense_Mutation p.S338R 0.23 deleterious(0.02) benign(0.398) TCGA-94-7033-01 17 72480152 72480152 G A CD300A Missense_Mutation p.E263K 0.61 tolerated(0.06) probably_damaging(0.919) TCGA-94-7033-01 17 72846506 72846506 C T GRIN2C Missense_Mutation p.G444R 0.52 tolerated(0.08) benign(0.04) TCGA-94-7033-01 17 73509796 73509796 C G CASKIN2 Missense_Mutation p.K30N 0.06 deleterious(0) probably_damaging(0.987) TCGA-94-7033-01 17 7577099 7577099 C G TP53 Missense_Mutation p.R280T 0.28 deleterious(0) probably_damaging(0.947) TCGA-94-7033-01 18 3879427 3879427 G C DLGAP1 Missense_Mutation p.I214M 0.17 tolerated(0.23) benign(0.068) TCGA-94-7033-01 18 67844016 67844016 G C RTTN Missense_Mutation p.I457M 0.21 tolerated(0.08) benign(0.377) TCGA-94-7033-01 19 13248174 13248174 G C NACC1 Missense_Mutation p.A404P 0.30 deleterious(0) probably_damaging(0.992) TCGA-94-7033-01 19 14582448 14582448 C T PKN1 Missense_Mutation p.T900M 0.25 deleterious(0.01) possibly_damaging(0.649) TCGA-94-7033-01 19 20230053 20230053 C T ZNF90 Missense_Mutation p.P564S 0.20 deleterious(0.04) probably_damaging(0.933) TCGA-94-7033-01 19 38902000 38902000 C A RASGRP4 Missense_Mutation p.G568C 0.31 deleterious(0) probably_damaging(1) TCGA-94-7033-01 19 39068591 39068591 G A RYR1 Missense_Mutation p.E4736K 0.14 unknown(0) TCGA-94-7033-01 19 40354310 40354310 G A FCGBP Nonsense_Mutation p.Q5387* 0.19 TCGA-94-7033-01 19 44470330 44470330 T C ZNF221 Missense_Mutation p.Y226H 0.26 tolerated(0.14) possibly_damaging(0.745) TCGA-94-7033-01 19 46289530 46289530 C T DMWD Silent p.A408A 0.19 TCGA-94-7033-01 19 47918107 47918107 T C MEIS3 Missense_Mutation p.D155G 0.12 deleterious(0) probably_damaging(0.99) TCGA-94-7033-01 19 49133029 49133029 G C SPHK2 Nonstop_Mutation p.*655Sext*2 0.14 TCGA-94-7033-01 19 50249843 50249843 G A TSKS Silent p.P292P 0.28 TCGA-94-7033-01 19 53879063 53879063 A C ZNF525 Missense_Mutation p.Q19P 0.14 tolerated(0.08) possibly_damaging(0.752) TCGA-94-7033-01 19 58774210 58774210 T C ZNF544 3'UTR 0.40 TCGA-94-7033-01 1 153615748 153615748 G C CHTOP Missense_Mutation p.G150A 0.20 tolerated(0.19) unknown(0) TCGA-94-7033-01 1 153991504 153991504 G C NUP210L Missense_Mutation p.Q1520E 0.23 tolerated(0.12) benign(0.008) TCGA-94-7033-01 1 155147971 155147971 G C TRIM46 Missense_Mutation p.R58P 0.15 deleterious(0.02) possibly_damaging(0.613) TCGA-94-7033-01 1 158299355 158299355 G A CD1B Missense_Mutation p.P231S 0.27 deleterious(0) probably_damaging(1) TCGA-94-7033-01 1 160147380 160147380 G A ATP1A4 Missense_Mutation p.D888N 0.14 tolerated(0.55) benign(0.062) TCGA-94-7033-01 1 166974346 166974346 A T MAEL Nonsense_Mutation p.K228* 0.42 TCGA-94-7033-01 1 197071539 197071539 C G ASPM Missense_Mutation p.R2281T 0.18 tolerated(0.07) possibly_damaging(0.52) TCGA-94-7033-01 1 21191043 21191043 C A EIF4G3 Missense_Mutation p.D928Y 0.32 deleterious(0) probably_damaging(1) TCGA-94-7033-01 1 212911693 212911693 C T NSL1 3'UTR 0.15 TCGA-94-7033-01 1 215368379 215368379 G A KCNK2 Missense_Mutation p.V303I 0.17 tolerated(0.53) benign(0.136) TCGA-94-7033-01 1 216373026 216373026 G C USH2A Missense_Mutation p.Q1252E 0.19 benign(0.005) TCGA-94-7033-01 1 226044368 226044368 G T TMEM63A Missense_Mutation p.S519Y 0.24 deleterious(0) probably_damaging(1) TCGA-94-7033-01 1 229771288 229771288 C T URB2 Missense_Mutation p.L310F 0.17 tolerated(0.2) probably_damaging(0.997) TCGA-94-7033-01 1 234742986 234742986 T C IRF2BP2 Missense_Mutation p.K554R 0.22 tolerated(0.13) possibly_damaging(0.899) TCGA-94-7033-01 1 27101437 27101437 G A ARID1A Silent p.Q1573Q 0.19 TCGA-94-7033-01 1 36360780 36360780 C G AGO1 Missense_Mutation p.F310L 0.27 deleterious(0) benign(0.438) TCGA-94-7033-01 1 53544444 53544444 T A PODN Missense_Mutation p.V469E 0.20 deleterious(0) possibly_damaging(0.733) TCGA-94-7033-01 1 67424570 67424570 G T MIER1 Nonsense_Mutation p.E180* 0.12 TCGA-94-7033-01 1 82456823 82456823 T A LPHN2 Missense_Mutation p.S1402R 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-94-7033-01 20 17970738 17970738 G C MGME1 Missense_Mutation p.E341Q 0.11 deleterious_low_confidence(0.03) benign(0.258) TCGA-94-7033-01 20 47317386 47317386 C A PREX1 Silent p.L274L 0.20 TCGA-94-7033-01 22 17071767 17071767 C G CCT8L2 Nonstop_Mutation p.*558Yext*1 0.07 TCGA-94-7033-01 22 26864581 26864581 C T HPS4 Missense_Mutation p.S202N 0.14 tolerated(0.09) benign(0.238) TCGA-94-7033-01 22 32881142 32881142 G A FBXO7 Missense_Mutation p.G245S 0.12 tolerated(0.25) possibly_damaging(0.672) TCGA-94-7033-01 2 122273279 122273279 C G CLASP1 Silent p.V202V 0.22 TCGA-94-7033-01 2 132275305 132275305 C G AC093838.4 RNA 0.15 TCGA-94-7033-01 2 15607503 15607503 G A NBAS Missense_Mutation p.R683C 0.19 deleterious(0) probably_damaging(0.977) TCGA-94-7033-01 2 176996104 176996104 G C HOXD8 Missense_Mutation p.E213Q 0.16 deleterious(0) probably_damaging(1) TCGA-94-7033-01 2 182322464 182322464 T A ITGA4 Missense_Mutation p.V28D 0.14 deleterious(0) benign(0.265) TCGA-94-7033-01 2 189898735 189898735 T C COL5A2 3'UTR 0.23 TCGA-94-7033-01 2 197712750 197712750 C T PGAP1 Missense_Mutation p.E625K 0.13 deleterious(0.04) benign(0.066) TCGA-94-7033-01 2 220022365 220022367 GAG - NHEJ1 In_Frame_Del p.L73del 0.21 TCGA-94-7033-01 2 220348725 220348725 G C SPEG Silent p.R2180R 0.19 TCGA-94-7033-01 2 240056324 240056324 T G HDAC4 Silent p.R332R 0.19 TCGA-94-7033-01 2 26416543 26416543 C T HADHA Silent p.A596A 0.28 TCGA-94-7033-01 2 74709966 74709966 G A CCDC142 5'UTR 0.16 TCGA-94-7033-01 3 122990388 122990388 A G SEC22A Missense_Mutation p.Y248C 0.19 tolerated(0.13) benign(0.005) TCGA-94-7033-01 3 152553616 152553616 T G P2RY1 Silent p.A15A 0.58 TCGA-94-7033-01 3 154898200 154898200 C T MME Silent p.C735C 0.15 TCGA-94-7033-01 3 178962477 178962477 G C KCNMB3 Missense_Mutation p.Q89E 0.15 tolerated(0.38) benign(0.142) TCGA-94-7033-01 3 182737931 182737931 C A MCCC1 Missense_Mutation p.G655V 0.06 deleterious(0) probably_damaging(1) TCGA-94-7033-01 3 195609057 195609057 C T TNK2 Missense_Mutation p.R314H 0.15 deleterious(0) probably_damaging(1) TCGA-94-7033-01 3 89259539 89259539 G T EPHA3 Missense_Mutation p.G228V 0.15 deleterious(0) probably_damaging(0.998) TCGA-94-7033-01 3 89259547 89259547 G T EPHA3 Missense_Mutation p.V231F 0.14 deleterious(0) probably_damaging(0.985) TCGA-94-7033-01 4 106601056 106601056 T A ARHGEF38 3'UTR 0.27 TCGA-94-7033-01 4 108816841 108816841 C T SGMS2 Silent p.S44S 0.12 TCGA-94-7033-01 4 114279980 114279980 A T ANK2 Missense_Mutation p.K3402N 0.33 benign(0.237) TCGA-94-7033-01 4 185701519 185701519 C G ACSL1 Missense_Mutation p.Q148H 0.24 deleterious(0.04) benign(0.024) TCGA-94-7033-01 4 48091778 48091778 C G TXK Missense_Mutation p.G258A 0.29 deleterious(0.02) probably_damaging(0.933) TCGA-94-7033-01 4 6080698 6080698 T C JAKMIP1 Missense_Mutation p.R424G 0.05 deleterious(0.01) benign(0.075) TCGA-94-7033-01 4 76442141 76442141 G A THAP6 Silent p.L80L 0.25 TCGA-94-7033-01 5 10411589 10411589 C T MARCH6 Silent p.L612L 0.18 TCGA-94-7033-01 5 115173390 115173390 G C ATG12 Missense_Mutation p.R79G 0.36 deleterious(0.01) possibly_damaging(0.818) TCGA-94-7033-01 5 1344546 1344546 C T CLPTM1L Silent p.T61T 0.23 TCGA-94-7033-01 5 140589883 140589883 G A PCDHB12 Silent p.L468L 0.18 TCGA-94-7033-01 5 156932676 156932676 C T ADAM19 Splice_Site p.X377_splice 0.33 TCGA-94-7033-01 5 180056378 180056378 G C FLT4 Missense_Mutation p.T289R 0.22 deleterious(0.03) probably_damaging(0.956) TCGA-94-7033-01 5 37816169 37816169 T C GDNF Missense_Mutation p.R91G 0.23 deleterious(0) probably_damaging(0.97) TCGA-94-7033-01 5 94764335 94764335 G A FAM81B Missense_Mutation p.G229R 0.34 deleterious(0) probably_damaging(0.947) TCGA-94-7033-01 6 125379206 125379206 A C RNF217 Missense_Mutation p.E120A 0.30 tolerated(0.2) probably_damaging(0.926) TCGA-94-7033-01 6 30624039 30624039 C A DHX16 Missense_Mutation p.G812C 0.19 deleterious(0) unknown(0) TCGA-94-7033-01 6 35423622 35423622 C T FANCE Missense_Mutation p.S116F 0.21 tolerated(0.71) possibly_damaging(0.553) TCGA-94-7033-01 6 82949990 82949990 T A IBTK Missense_Mutation p.I72F 0.17 deleterious(0.01) benign(0.217) TCGA-94-7033-01 7 120781010 120781010 G C CPED1 Missense_Mutation p.G610A 0.23 tolerated(0.08) possibly_damaging(0.766) TCGA-94-7033-01 7 136936055 136936055 C T PTN Missense_Mutation p.A125T 0.23 deleterious(0) probably_damaging(0.986) TCGA-94-7033-01 7 158560407 158560407 G C ESYT2 Missense_Mutation p.R336G 0.14 deleterious(0) possibly_damaging(0.822) TCGA-94-7033-01 7 25163726 25163726 C G CYCS Missense_Mutation p.E5Q 0.12 deleterious(0.03) benign(0.158) TCGA-94-7033-01 7 27134995 27134995 G C HOXA1 Silent p.S179S 0.31 TCGA-94-7033-01 7 39246997 39246997 C G POU6F2 Missense_Mutation p.L97V 0.17 deleterious_low_confidence(0.05) probably_damaging(0.952) TCGA-94-7033-01 7 45148500 45148500 C G TBRG4 Missense_Mutation p.E113Q 0.27 tolerated(0.16) benign(0.033) TCGA-94-7033-01 7 5567405 5567405 A C ACTB Missense_Mutation p.S368A 0.31 tolerated_low_confidence(0.17) benign(0.028) TCGA-94-7033-01 7 91503697 91503697 C G MTERF Missense_Mutation p.E137D 0.11 tolerated(0.22) benign(0.006) TCGA-94-7033-01 8 135524759 135524759 G A ZFAT Missense_Mutation p.A1107V 0.56 tolerated(0.12) possibly_damaging(0.726) TCGA-94-7033-01 8 139158275 139158275 C T FAM135B Missense_Mutation p.R1156Q 0.05 deleterious(0) probably_damaging(0.995) TCGA-94-7033-01 8 142441111 142441111 A T PTP4A3 Silent p.P163P 0.33 TCGA-94-7033-01 8 145638044 145638067 CCGGGAGCTGAGGAGCAAGTGGGC ACGGG SLC39A4 Splice_Site p.X606_splice 0.21 TCGA-94-7033-01 8 51415411 51415411 T A SNTG1 Missense_Mutation p.L146H 0.15 deleterious(0) probably_damaging(1) TCGA-94-7033-01 8 95942622 95942622 G C TP53INP1 3'UTR 0.12 TCGA-94-7033-01 8 97318681 97318695 TTGAATACCTTCTTC - PTDSS1 In_Frame_Del p.N303_L307del 0.16 TCGA-94-7033-01 X 109694870 109694870 A G RGAG1 Missense_Mutation p.D342G 0.42 deleterious(0.05) benign(0.082) TCGA-94-7033-01 X 19025449 19025449 C G GPR64 Silent p.L531L 0.48 TCGA-94-7557-01 10 11291127 11291127 C T CELF2 Silent p.P122P 0.10 TCGA-94-7557-01 10 126395352 126395352 G A FAM53B 5'UTR 0.22 TCGA-94-7557-01 10 59976025 59976025 T C IPMK Missense_Mutation p.M143V 0.31 deleterious(0) possibly_damaging(0.809) TCGA-94-7557-01 10 63852253 63852253 C T ARID5B Missense_Mutation p.P1011S 0.38 tolerated(0.06) probably_damaging(0.966) TCGA-94-7557-01 10 91066465 91066465 G A IFIT2 Missense_Mutation p.R251H 0.10 tolerated(0.11) benign(0.062) TCGA-94-7557-01 10 91497281 91497281 G C KIF20B Missense_Mutation p.E855Q 0.20 tolerated(0.05) benign(0.053) TCGA-94-7557-01 11 111594645 111594645 C T SIK2 Missense_Mutation p.A858V 0.32 tolerated_low_confidence(0.08) benign(0.001) TCGA-94-7557-01 11 113857406 113857406 T A HTR3A Missense_Mutation p.V297D 0.26 deleterious(0) probably_damaging(1) TCGA-94-7557-01 11 116649587 116649587 T C ZNF259 3'UTR 0.39 TCGA-94-7557-01 11 116657231 116657231 C T ZNF259 Missense_Mutation p.R164Q 0.37 deleterious(0) probably_damaging(1) TCGA-94-7557-01 11 129990678 129990678 G C APLP2 Missense_Mutation p.E161Q 0.26 deleterious(0.03) benign(0.046) TCGA-94-7557-01 11 3714542 3714542 G A NUP98 Silent p.L1411L 0.11 TCGA-94-7557-01 11 64884979 64884979 C T ZNHIT2 Silent p.Q49Q 0.27 TCGA-94-7557-01 12 100784797 100784797 G C SLC17A8 Missense_Mutation p.D125H 0.06 deleterious(0.01) probably_damaging(1) TCGA-94-7557-01 12 100994317 100994317 C G GAS2L3 Missense_Mutation p.S59C 0.22 deleterious(0) probably_damaging(0.951) TCGA-94-7557-01 12 120903453 120903453 G A SRSF9 Missense_Mutation p.S109F 0.22 deleterious(0) probably_damaging(0.957) TCGA-94-7557-01 12 126135422 126135422 G T TMEM132B Missense_Mutation p.V608L 0.29 tolerated(0.34) probably_damaging(0.997) TCGA-94-7557-01 12 33592431 33592431 C T SYT10 Silent p.V9V 0.08 TCGA-94-7557-01 12 49745113 49745113 C G DNAJC22 Nonsense_Mutation p.S285* 0.21 TCGA-94-7557-01 12 50498387 50498387 C A GPD1 Silent p.G24G 0.10 TCGA-94-7557-01 12 7556211 7556211 G C CD163L1 Nonsense_Mutation p.S443* 0.30 TCGA-94-7557-01 12 7942129 7942129 C G NANOG 5'UTR 0.32 TCGA-94-7557-01 14 60928107 60928107 G T C14orf39 Nonsense_Mutation p.S361* 0.50 TCGA-94-7557-01 14 64491941 64491941 G A SYNE2 Silent p.L2018L 0.09 TCGA-94-7557-01 14 64491987 64491987 G A SYNE2 Missense_Mutation p.E2034K 0.08 benign(0.057) TCGA-94-7557-01 14 64492011 64492011 G A SYNE2 Missense_Mutation p.E2042K 0.11 benign(0.117) TCGA-94-7557-01 14 64492029 64492029 G A SYNE2 Missense_Mutation p.D2048N 0.13 probably_damaging(0.999) TCGA-94-7557-01 14 74961586 74961586 G T ISCA2 Silent p.V116V 0.10 TCGA-94-7557-01 14 95081024 95081024 C T SERPINA3 Silent p.T82T 0.34 TCGA-94-7557-01 15 40599851 40599851 A G PLCB2 Missense_Mutation p.L8P 0.11 deleterious(0) unknown(0) TCGA-94-7557-01 16 28877450 28877450 C G SH2B1 Missense_Mutation p.S12C 0.50 tolerated(0.07) benign(0.417) TCGA-94-7557-01 16 89351511 89351511 T A ANKRD11 Missense_Mutation p.E480V 0.20 benign(0.18) TCGA-94-7557-01 16 89757942 89757942 C T CDK10 Silent p.N108N 0.25 TCGA-94-7557-01 17 34624285 34624285 C T CCL3L1 Missense_Mutation p.V86I 0.24 tolerated(1) benign(0.005) TCGA-94-7557-01 17 39306014 39306014 G A KRTAP4-5 Silent p.V2V 0.61 TCGA-94-7557-01 17 47302037 47302037 G A PHOSPHO1 Silent p.N150N 0.40 TCGA-94-7557-01 17 7579496 7579497 GG A TP53 Frame_Shift_Del p.P64Sfs*59 0.33 TCGA-94-7557-01 18 61379824 61379824 C T SERPINB11 Missense_Mutation p.S85F 0.07 tolerated(0.24) possibly_damaging(0.689) TCGA-94-7557-01 18 7035998 7035998 G A LAMA1 Silent p.D609D 0.18 TCGA-94-7557-01 19 10561289 10561289 C T PDE4A Silent p.L211L 0.67 TCGA-94-7557-01 19 10571704 10571704 C T PDE4A Missense_Mutation p.L464F 0.26 deleterious(0.02) probably_damaging(0.97) TCGA-94-7557-01 19 10572299 10572299 C A PDE4A Silent p.I521I 0.40 TCGA-94-7557-01 19 10574635 10574635 C T PDE4A Missense_Mutation p.S637F 0.50 deleterious(0.01) benign(0.342) TCGA-94-7557-01 19 10577900 10577900 C T PDE4A Missense_Mutation p.S755F 0.30 deleterious_low_confidence(0) benign(0.003) TCGA-94-7557-01 19 10578309 10578309 C T PDE4A 3'UTR 0.48 TCGA-94-7557-01 19 10578383 10578383 C T PDE4A 3'UTR 0.38 TCGA-94-7557-01 19 10578391 10578391 C T PDE4A 3'UTR 0.38 TCGA-94-7557-01 19 10597155 10597155 G A KEAP1 3'UTR 0.50 TCGA-94-7557-01 19 10602561 10602561 G A KEAP1 Silent p.L339L 0.40 TCGA-94-7557-01 19 10602565 10602565 G A KEAP1 Missense_Mutation p.S338L 0.40 deleterious(0) probably_damaging(1) TCGA-94-7557-01 19 10602663 10602663 G A KEAP1 Silent p.F305F 0.36 TCGA-94-7557-01 19 10602882 10602882 G A KEAP1 Silent p.I232I 0.25 TCGA-94-7557-01 19 10602885 10602885 G A KEAP1 Silent p.L231L 0.20 TCGA-94-7557-01 19 10610155 10610155 G A KEAP1 Silent p.I185I 0.40 TCGA-94-7557-01 19 10610251 10610251 G A KEAP1 Silent p.L153L 0.33 TCGA-94-7557-01 19 10625480 10625480 G A S1PR5 Missense_Mutation p.P70S 0.62 tolerated(0.06) probably_damaging(0.999) TCGA-94-7557-01 19 2422116 2422116 A G TMPRSS9 Missense_Mutation p.T773A 0.11 tolerated(0.2) benign(0.008) TCGA-94-7557-01 19 38876191 38876191 G C GGN Missense_Mutation p.Q571E 0.11 tolerated_low_confidence(0.42) benign(0.371) TCGA-94-7557-01 19 38976330 38976330 C T RYR1 Missense_Mutation p.R1679C 0.30 possibly_damaging(0.855) TCGA-94-7557-01 19 42703849 42703849 G C DEDD2 Nonsense_Mutation p.S241* 0.08 TCGA-94-7557-01 19 51363345 51363345 C T KLK3 Missense_Mutation p.R250W 0.29 tolerated(0.05) benign(0.067) TCGA-94-7557-01 19 54759228 54759228 G A LILRB5 Silent p.G291G 0.14 TCGA-94-7557-01 19 58262216 58262216 G C AC003006.7 Missense_Mutation p.E33Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-94-7557-01 19 7709575 7709575 G A STXBP2 Missense_Mutation p.D395N 0.45 tolerated(0.21) benign(0.083) TCGA-94-7557-01 1 110050917 110050917 C G AMIGO1 Missense_Mutation p.Q206H 0.22 deleterious(0.05) possibly_damaging(0.869) TCGA-94-7557-01 1 110562202 110562202 C T AHCYL1 Silent p.P473P 0.33 TCGA-94-7557-01 1 11080620 11080620 C A TARDBP Missense_Mutation p.F226L 0.28 deleterious(0) possibly_damaging(0.543) TCGA-94-7557-01 1 114506095 114506095 C T HIPK1 Silent p.S730S 0.30 TCGA-94-7557-01 1 12979753 12979753 C T PRAMEF7 Silent p.C315C 0.04 TCGA-94-7557-01 1 156354618 156354618 A C RHBG 3'UTR 0.55 TCGA-94-7557-01 1 167095910 167095910 G C DUSP27 Missense_Mutation p.R514S 0.24 tolerated(0.07) benign(0.004) TCGA-94-7557-01 1 176903370 176903370 G C ASTN1 Silent p.G863G 0.07 TCGA-94-7557-01 1 196965026 196965026 G T CFHR5 Missense_Mutation p.V263F 0.10 tolerated(0.13) benign(0.029) TCGA-94-7557-01 1 216380739 216380739 A G USH2A Silent p.V1064V 0.12 TCGA-94-7557-01 1 249110747 249110747 G C SH3BP5L Missense_Mutation p.R121G 0.17 tolerated(0.1) probably_damaging(0.981) TCGA-94-7557-01 1 43895701 43895701 G T SZT2 Missense_Mutation p.S1386I 0.23 tolerated(0.36) probably_damaging(0.934) TCGA-94-7557-01 1 44437948 44437948 T C DPH2 Silent p.H429H 0.28 TCGA-94-7557-01 1 48764299 48764299 A T SPATA6 3'UTR 0.10 TCGA-94-7557-01 1 59148075 59148075 A G MYSM1 Missense_Mutation p.I214T 0.32 tolerated(0.05) probably_damaging(0.999) TCGA-94-7557-01 20 47645113 47645113 C T ARFGEF2 Silent p.S1657S 0.20 TCGA-94-7557-01 21 27253830 27253830 C G APP 3'UTR 0.50 TCGA-94-7557-01 22 45937111 45937111 A G FBLN1 Missense_Mutation p.I309V 0.23 tolerated(0.09) benign(0.394) TCGA-94-7557-01 2 132238154 132238154 C T TUBA3D Silent p.F296F 0.27 TCGA-94-7557-01 2 136530065 136530065 G T UBXN4 Missense_Mutation p.A300S 0.31 tolerated(0.11) benign(0.028) TCGA-94-7557-01 2 136680365 136680365 G C DARS Missense_Mutation p.S267C 0.13 tolerated(0.11) benign(0) TCGA-94-7557-01 2 177015066 177015066 G A HOXD3 5'Flank 0.36 TCGA-94-7557-01 2 179615279 179615279 T C TTN Intron 0.16 TCGA-94-7557-01 2 187697950 187697950 G T ZSWIM2 Missense_Mutation p.Q280K 0.35 tolerated(0.12) benign(0.029) TCGA-94-7557-01 2 202626236 202626236 G A ALS2 Missense_Mutation p.H161Y 0.18 deleterious(0) probably_damaging(1) TCGA-94-7557-01 2 232321393 232321393 C T NCL Missense_Mutation p.A552T 0.23 benign(0.241) TCGA-94-7557-01 2 32688377 32688377 A C BIRC6 Silent p.A1623A 0.23 TCGA-94-7557-01 2 79878704 79878704 A T CTNNA2 Missense_Mutation p.I8F 0.20 deleterious(0.01) benign(0.224) TCGA-94-7557-01 2 97400169 97400169 T C LMAN2L Missense_Mutation p.Y134C 0.31 deleterious(0) probably_damaging(0.993) TCGA-94-7557-01 3 108326995 108326995 C G DZIP3 Missense_Mutation p.S31C 0.31 deleterious_low_confidence(0.01) benign(0.155) TCGA-94-7557-01 3 129252489 129252489 G T RHO Missense_Mutation p.K325N 0.28 deleterious(0.01) benign(0.166) TCGA-94-7557-01 3 130744137 130744137 C G ASTE1 Missense_Mutation p.G5A 0.25 deleterious(0) probably_damaging(1) TCGA-94-7557-01 3 66457837 66457837 G A LRIG1 Silent p.L338L 0.36 TCGA-94-7557-01 3 97852067 97852067 C G OR5H1 Missense_Mutation p.H176D 0.24 deleterious(0.01) probably_damaging(0.982) TCGA-94-7557-01 4 140282950 140282959 TATGTGGACT - NAA15 Frame_Shift_Del p.V539* 0.12 TCGA-94-7557-01 4 48038332 48038332 T C NIPAL1 3'UTR 0.17 TCGA-94-7557-01 4 80246911 80246911 G C NAA11 Missense_Mutation p.L41V 0.05 deleterious(0.02) possibly_damaging(0.589) TCGA-94-7557-01 5 13814822 13814822 C G DNAH5 Missense_Mutation p.K2374N 0.21 possibly_damaging(0.728) TCGA-94-7557-01 5 13814851 13814851 C T DNAH5 Missense_Mutation p.D2365N 0.23 possibly_damaging(0.822) TCGA-94-7557-01 5 13814953 13814953 C T DNAH5 Missense_Mutation p.E2331K 0.12 possibly_damaging(0.621) TCGA-94-7557-01 5 13817705 13817705 C G DNAH5 Missense_Mutation p.D2314H 0.09 probably_damaging(0.961) TCGA-94-7557-01 5 13817760 13817760 C T DNAH5 Silent p.A2295A 0.13 TCGA-94-7557-01 5 13817783 13817783 C T DNAH5 Missense_Mutation p.E2288K 0.13 possibly_damaging(0.621) TCGA-94-7557-01 5 141243327 141243327 C A PCDH1 Missense_Mutation p.V857L 0.44 deleterious(0.02) benign(0.269) TCGA-94-7557-01 5 14716914 14716914 C T ANKH Missense_Mutation p.V348M 0.33 deleterious(0.01) benign(0.093) TCGA-94-7557-01 5 176951615 176951615 C G FAM193B Missense_Mutation p.E623Q 0.10 deleterious(0.01) probably_damaging(0.994) TCGA-94-7557-01 5 23526824 23526824 C T PRDM9 Nonsense_Mutation p.Q543* 0.21 TCGA-94-7557-01 5 33662102 33662102 C T ADAMTS12 Missense_Mutation p.S320N 0.24 tolerated(0.07) probably_damaging(1) TCGA-94-7557-01 6 129722392 129722392 C T LAMA2 Silent p.S1823S 0.19 TCGA-94-7557-01 6 143074198 143074198 A G HIVEP2 3'UTR 0.13 TCGA-94-7557-01 6 159262762 159262762 C T OSTCP1 RNA 0.18 TCGA-94-7557-01 6 36823643 36823643 G A PPIL1 Silent p.S149S 0.11 TCGA-94-7557-01 6 44122477 44122477 G A TMEM63B Missense_Mutation p.D786N 0.20 tolerated(0.45) benign(0.001) TCGA-94-7557-01 6 74512966 74512966 C A CD109 Missense_Mutation p.Q968K 0.30 deleterious(0.03) possibly_damaging(0.896) TCGA-94-7557-01 6 82461421 82461421 G A FAM46A Silent p.A146A 0.10 TCGA-94-7557-01 6 99823962 99823962 C T COQ3 Missense_Mutation p.D195N 0.16 tolerated(0.3) benign(0.038) TCGA-94-7557-01 7 140706218 140706218 G C MRPS33 3'UTR 0.18 TCGA-94-7557-01 7 141795484 141795484 C T MGAM Silent p.G1630G 0.09 TCGA-94-7557-01 7 20725329 20725329 A C ABCB5 Missense_Mutation p.K627T 0.14 tolerated(0.43) benign(0.022) TCGA-94-7557-01 7 99706071 99706071 G C TAF6 Silent p.L496L 0.25 TCGA-94-7557-01 8 145151944 145151944 A G CYC1 Silent p.P260P 0.37 TCGA-94-7557-01 8 59059150 59059150 C T FAM110B Silent p.L121L 0.28 TCGA-94-7557-01 8 63927786 63927786 T C GGH 3'UTR 0.62 TCGA-94-7557-01 8 68071260 68071260 C T CSPP1 Missense_Mutation p.A804V 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-94-7557-01 8 8185593 8185594 - T SGK223 Frame_Shift_Ins p.R900Kfs*70 0.19 TCGA-94-7557-01 8 98288995 98288995 T C TSPYL5 Missense_Mutation p.I360V 0.33 tolerated(0.28) possibly_damaging(0.487) TCGA-94-7557-01 9 103348134 103348134 G C MURC Missense_Mutation p.D166H 0.45 tolerated(0.11) possibly_damaging(0.667) TCGA-94-7557-01 9 128724417 128724417 A G PBX3 Missense_Mutation p.D349G 0.42 deleterious(0.03) probably_damaging(0.987) TCGA-94-7557-01 9 35660531 35660531 C A CCDC107 Intron 0.47 TCGA-94-7557-01 X 103903573 103903573 C A IL1RAPL2 Intron 0.39 TCGA-94-7557-01 X 12904308 12904308 A G TLR7 Silent p.L227L 0.56 TCGA-94-7557-01 X 152827697 152827697 A G ATP2B3 Silent p.G1052G 0.16 TCGA-94-7557-01 X 153216261 153216261 C T HCFC1 Intron 0.65 TCGA-94-7557-01 X 153459060 153459060 G C OPN1MW Missense_Mutation p.L302F 0.32 tolerated(0.59) probably_damaging(0.909) TCGA-94-7557-01 X 47775829 47775829 C T ZNF81 Missense_Mutation p.P595L 0.48 deleterious(0.01) possibly_damaging(0.864) TCGA-94-7557-01 X 68383002 68383002 C G PJA1 Missense_Mutation p.R27T 0.46 deleterious(0) possibly_damaging(0.893) TCGA-94-7557-01 X 73961819 73961819 G A KIAA2022 Missense_Mutation p.T858I 0.09 deleterious(0) benign(0.017) TCGA-94-7557-01 X 8553438 8553438 C T KAL1 Splice_Site p.X243_splice 0.57 TCGA-94-7943-01 10 121598062 121598062 G T MCMBP Missense_Mutation p.Q467K 0.06 deleterious(0.01) possibly_damaging(0.78) TCGA-94-7943-01 10 22022819 22022819 G A MLLT10 Silent p.V873V 0.15 TCGA-94-7943-01 10 79567556 79567556 G C DLG5 Missense_Mutation p.I1598M 0.14 deleterious(0.04) benign(0.285) TCGA-94-7943-01 11 103907588 103907588 C T DDI1 Missense_Mutation p.S13F 0.10 deleterious(0) probably_damaging(0.93) TCGA-94-7943-01 11 108160384 108160384 A G ATM Missense_Mutation p.N1431S 0.33 tolerated(0.1) benign(0.253) TCGA-94-7943-01 11 111933297 111933297 G C DLAT 3'UTR 0.17 TCGA-94-7943-01 11 112040052 112040052 G A TEX12 Missense_Mutation p.E21K 0.39 tolerated(0.07) probably_damaging(0.997) TCGA-94-7943-01 11 112042538 112042538 G A TEX12 Missense_Mutation p.E91K 0.33 tolerated(0.28) benign(0.022) TCGA-94-7943-01 11 118869194 118869194 G A CCDC84 Missense_Mutation p.E59K 0.25 deleterious(0.01) probably_damaging(0.932) TCGA-94-7943-01 11 123909027 123909027 G A OR10G7 Missense_Mutation p.R228C 0.25 deleterious(0.03) benign(0.007) TCGA-94-7943-01 11 131781411 131781411 G A NTM Silent p.K12K 0.11 TCGA-94-7943-01 11 134257455 134257455 G A B3GAT1 Silent p.L33L 0.43 TCGA-94-7943-01 11 18636265 18636265 C G SPTY2D1 Missense_Mutation p.G519A 0.34 tolerated(0.11) benign(0.189) TCGA-94-7943-01 11 2181062 2181062 G T INS 3'UTR 0.28 TCGA-94-7943-01 11 4870252 4870252 G T OR51S1 Missense_Mutation p.L63M 0.35 deleterious(0) probably_damaging(0.97) TCGA-94-7943-01 11 4945195 4945195 G T OR51G1 Nonsense_Mutation p.Y125* 0.31 TCGA-94-7943-01 11 55703559 55703559 G A OR5I1 Silent p.F106F 0.18 TCGA-94-7943-01 11 62295182 62295182 C A AHNAK Missense_Mutation p.G2236V 0.13 possibly_damaging(0.784) TCGA-94-7943-01 11 62298564 62298564 C G AHNAK Missense_Mutation p.D1109H 0.04 probably_damaging(1) TCGA-94-7943-01 11 62299587 62299587 C T AHNAK Missense_Mutation p.E768K 0.03 possibly_damaging(0.889) TCGA-94-7943-01 11 64359262 64359262 G A SLC22A12 Silent p.P78P 0.28 TCGA-94-7943-01 11 65810615 65810615 T G GAL3ST3 Missense_Mutation p.D220A 0.17 deleterious(0.03) possibly_damaging(0.589) TCGA-94-7943-01 11 67020976 67020976 C T KDM2A Silent p.L995L 0.07 TCGA-94-7943-01 11 67259584 67259584 C T PITPNM1 Missense_Mutation p.E1219K 0.13 tolerated_low_confidence(0.05) benign(0.078) TCGA-94-7943-01 11 69458728 69458728 C G CCND1 Missense_Mutation p.H181Q 0.10 deleterious(0) probably_damaging(0.976) TCGA-94-7943-01 11 73687938 73687938 C T UCP2 Silent p.R154R 0.21 TCGA-94-7943-01 11 92714810 92714810 T A MTNR1B Missense_Mutation p.Y141N 0.19 deleterious(0) possibly_damaging(0.877) TCGA-94-7943-01 11 94201016 94201016 T A MRE11A Missense_Mutation p.N354I 0.26 deleterious(0.04) possibly_damaging(0.869) TCGA-94-7943-01 12 124337760 124337760 C T DNAH10 Missense_Mutation p.A1982V 0.21 probably_damaging(0.988) TCGA-94-7943-01 12 12630774 12630774 G C DUSP16 Missense_Mutation p.Q331E 0.09 tolerated(1) benign(0.002) TCGA-94-7943-01 12 132467003 132467003 C T EP400 Nonsense_Mutation p.Q637* 0.28 TCGA-94-7943-01 12 21531241 21531241 C T IAPP Missense_Mutation p.H51Y 0.15 deleterious(0) benign(0.249) TCGA-94-7943-01 12 26277072 26277073 - T BHLHE41 Frame_Shift_Ins p.R56Kfs*6 0.22 TCGA-94-7943-01 12 40037647 40037647 A T C12orf40 Missense_Mutation p.N44Y 0.31 deleterious(0) probably_damaging(0.996) TCGA-94-7943-01 12 49230021 49230021 A T DDX23 Missense_Mutation p.I422N 0.19 deleterious(0) probably_damaging(0.998) TCGA-94-7943-01 12 5154056 5154056 C T KCNA5 Missense_Mutation p.S248F 0.34 deleterious(0.03) possibly_damaging(0.856) TCGA-94-7943-01 12 54675277 54675277 G A HNRNPA1 Silent p.T41T 0.15 TCGA-94-7943-01 12 54675278 54675278 G A HNRNPA1 Missense_Mutation p.D42N 0.15 deleterious(0.05) possibly_damaging(0.856) TCGA-94-7943-01 12 54676372 54676372 G C HNRNPA1 Missense_Mutation p.G200A 0.14 tolerated(0.05) unknown(0) TCGA-94-7943-01 12 56524860 56524860 C T ESYT1 Nonsense_Mutation p.Q202* 0.14 TCGA-94-7943-01 12 56554034 56554034 G A MYL6 Silent p.K119K 0.31 TCGA-94-7943-01 12 6630225 6630225 G C NCAPD2 Missense_Mutation p.E555Q 0.12 tolerated(0.12) benign(0.421) TCGA-94-7943-01 12 73015437 73015437 G A TRHDE Missense_Mutation p.E816K 0.06 tolerated(0.11) possibly_damaging(0.908) TCGA-94-7943-01 12 7585100 7585100 C T CD163L1 Silent p.G226G 0.13 TCGA-94-7943-01 12 95663959 95663959 G A VEZT Silent p.L281L 0.20 TCGA-94-7943-01 12 97052110 97052110 G A C12orf55 Missense_Mutation p.E1816K 0.13 tolerated(0.06) benign(0.019) TCGA-94-7943-01 13 113333734 113333734 G A C13orf35 Missense_Mutation p.R14K 0.12 deleterious_low_confidence(0) benign(0.14) TCGA-94-7943-01 13 25743988 25743988 G A AMER2 Silent p.G590G 0.28 TCGA-94-7943-01 13 37593487 37593487 G C SUPT20H Missense_Mutation p.L622V 0.17 tolerated(0.23) benign(0.338) TCGA-94-7943-01 13 41134642 41134642 G A FOXO1 Missense_Mutation p.S329L 0.15 deleterious(0) probably_damaging(0.977) TCGA-94-7943-01 14 36230065 36230065 G C RALGAPA1 Missense_Mutation p.L173V 0.24 deleterious(0.04) benign(0.202) TCGA-94-7943-01 14 45513846 45513846 T C FAM179B Silent p.N1309N 0.12 TCGA-94-7943-01 14 53417188 53417188 C T FERMT2 Silent p.L33L 0.05 TCGA-94-7943-01 14 57082664 57082664 C T TMEM260 Missense_Mutation p.S287F 0.05 tolerated(0.75) benign(0.003) TCGA-94-7943-01 14 64453290 64453290 T C SYNE2 Silent p.V756V 0.19 TCGA-94-7943-01 14 88946208 88946208 G A PTPN21 Missense_Mutation p.P523S 0.58 tolerated(0.37) probably_damaging(0.999) TCGA-94-7943-01 15 40920321 40920321 G C CASC5 Missense_Mutation p.L1836F 0.20 deleterious(0.05) possibly_damaging(0.664) TCGA-94-7943-01 15 42092056 42092056 T C MAPKBP1 Silent p.S50S 0.31 TCGA-94-7943-01 15 74963867 74963867 G C EDC3 Nonsense_Mutation p.S138* 0.13 TCGA-94-7943-01 15 90611575 90611575 G C ZNF710 Missense_Mutation p.E402D 0.03 deleterious(0.02) benign(0.185) TCGA-94-7943-01 15 90774352 90774352 G A CIB1 Missense_Mutation p.S147F 0.16 deleterious(0.04) possibly_damaging(0.528) TCGA-94-7943-01 16 11272266 11272266 G C CLEC16A Missense_Mutation p.D961H 0.43 tolerated_low_confidence(0.15) benign(0.221) TCGA-94-7943-01 16 1756409 1756409 G T MAPK8IP3 Silent p.S23S 0.12 TCGA-94-7943-01 16 31487467 31487467 C G TGFB1I1 Missense_Mutation p.F283L 0.49 deleterious(0) benign(0.077) TCGA-94-7943-01 16 50827556 50827556 G A CYLD Missense_Mutation p.C817Y 0.21 deleterious(0) probably_damaging(1) TCGA-94-7943-01 16 55565837 55565837 C T LPCAT2 Silent p.F218F 0.36 TCGA-94-7943-01 16 58031550 58031550 C A ZNF319 Missense_Mutation p.C207F 0.33 deleterious(0) probably_damaging(0.996) TCGA-94-7943-01 16 68289205 68289205 G T PLA2G15 Missense_Mutation p.V142L 0.38 deleterious(0.01) possibly_damaging(0.89) TCGA-94-7943-01 16 68867370 68867370 G A CDH1 Missense_Mutation p.A873T 0.50 deleterious(0) probably_damaging(1) TCGA-94-7943-01 16 69154417 69154417 G A CHTF8 Missense_Mutation p.R93W 0.39 tolerated(0.07) benign(0.004) TCGA-94-7943-01 16 71823281 71823281 G A AP1G1 Silent p.I34I 0.39 TCGA-94-7943-01 16 9862913 9862913 G T GRIN2A Missense_Mutation p.T797N 0.24 deleterious(0) probably_damaging(0.999) TCGA-94-7943-01 17 10210370 10210370 C G MYH13 Silent p.L1727L 0.17 TCGA-94-7943-01 17 10216065 10216065 C A MYH13 Silent p.L1397L 0.38 TCGA-94-7943-01 17 10441034 10441034 G A MYH2 Missense_Mutation p.T512M 0.04 tolerated(0.08) benign(0.381) TCGA-94-7943-01 17 1538050 1538050 C T SCARF1 3'UTR 0.03 TCGA-94-7943-01 17 15989675 15989675 G A NCOR1 Missense_Mutation p.P1033L 0.30 probably_damaging(0.999) TCGA-94-7943-01 17 30685642 30685642 C T ZNF207 Missense_Mutation p.L97F 0.49 tolerated_low_confidence(0.07) benign(0.144) TCGA-94-7943-01 17 39927968 39927968 C T JUP Missense_Mutation p.E47K 0.18 tolerated(0.11) benign(0.021) TCGA-94-7943-01 17 41151959 41151959 G A RPL27 Missense_Mutation p.D31N 0.21 tolerated(0.12) benign(0.03) TCGA-94-7943-01 17 440360 440360 G A VPS53 Silent p.V641V 0.70 TCGA-94-7943-01 17 56271441 56271441 C T EPX Silent p.F194F 0.12 TCGA-94-7943-01 17 61611571 61611571 C A KCNH6 Missense_Mutation p.P334T 0.14 deleterious(0.01) probably_damaging(0.955) TCGA-94-7943-01 17 65688950 65688950 G C PITPNC1 Silent p.L315L 0.15 TCGA-94-7943-01 17 6916071 6916071 G T AC040977.1 Missense_Mutation p.H127N 0.14 tolerated_low_confidence(0.51) benign(0.003) TCGA-94-7943-01 17 6982202 6982202 G T CLEC10A Intron 0.64 TCGA-94-7943-01 17 72308243 72308243 G T DNAI2 Missense_Mutation p.Q532H 0.40 tolerated(0.12) benign(0.401) TCGA-94-7943-01 17 72310274 72310276 AGA - DNAI2 In_Frame_Del p.E581del 0.34 TCGA-94-7943-01 17 73228031 73228031 G A NUP85 Silent p.L451L 0.30 TCGA-94-7943-01 17 7339731 7339731 T A TMEM102 Missense_Mutation p.C145S 0.87 tolerated(0.44) benign(0.015) TCGA-94-7943-01 17 7577548 7577548 C A TP53 Missense_Mutation p.G245C 0.77 deleterious(0) probably_damaging(1) TCGA-94-7943-01 17 80014536 80014536 A G GPS1 Missense_Mutation p.H423R 0.50 tolerated(0.81) benign(0.001) TCGA-94-7943-01 17 9683159 9683159 G T DHRS7C Missense_Mutation p.P155H 0.35 deleterious(0.03) probably_damaging(1) TCGA-94-7943-01 18 21723156 21723156 C G CABYR Silent p.L26L 0.10 TCGA-94-7943-01 18 29446916 29446916 T A TRAPPC8 Missense_Mutation p.H829L 0.51 tolerated(0.15) benign(0.027) TCGA-94-7943-01 18 56203791 56203791 T C ALPK2 Missense_Mutation p.N1210D 0.12 tolerated(0.3) benign(0.142) TCGA-94-7943-01 18 72223671 72223671 C T CNDP1 Silent p.Y41Y 0.58 TCGA-94-7943-01 19 11030309 11030309 C G CARM1 Silent p.V353V 0.20 TCGA-94-7943-01 19 11618279 11618279 G T ECSIT Silent p.I348I 0.06 TCGA-94-7943-01 19 14231463 14231463 G A ASF1B Silent p.I139I 0.18 TCGA-94-7943-01 19 14515222 14515222 C G CD97 Missense_Mutation p.L493V 0.03 tolerated(1) benign(0.437) TCGA-94-7943-01 19 15366294 15366294 C G BRD4 Missense_Mutation p.D621H 0.18 possibly_damaging(0.861) TCGA-94-7943-01 19 17611585 17611585 C G SLC27A1 Missense_Mutation p.F512L 0.17 deleterious(0) probably_damaging(0.973) TCGA-94-7943-01 19 18896597 18896597 G T COMP Missense_Mutation p.D518E 0.25 deleterious(0) probably_damaging(0.996) TCGA-94-7943-01 19 18968186 18968186 G C UPF1 Missense_Mutation p.A676P 0.18 deleterious(0) possibly_damaging(0.594) TCGA-94-7943-01 19 19745909 19745909 C G GMIP Missense_Mutation p.R558S 0.21 deleterious(0) probably_damaging(0.994) TCGA-94-7943-01 19 30199222 30199222 C T C19orf12 Silent p.L44L 0.20 TCGA-94-7943-01 19 35449562 35449562 A G ZNF792 Silent p.C399C 0.25 TCGA-94-7943-01 19 35719334 35719334 C T FAM187B Missense_Mutation p.D84N 0.05 tolerated(1) benign(0.002) TCGA-94-7943-01 19 36108207 36108207 T C HAUS5 Missense_Mutation p.C192R 0.43 deleterious(0) probably_damaging(1) TCGA-94-7943-01 19 36728009 36728009 C G ZNF146 Missense_Mutation p.Q223E 0.12 tolerated(0.05) probably_damaging(0.992) TCGA-94-7943-01 19 37644446 37644446 G C ZNF585A Missense_Mutation p.Q64E 0.12 tolerated(1) benign(0.002) TCGA-94-7943-01 19 39306186 39306186 C T ECH1 3'UTR 0.74 TCGA-94-7943-01 19 39371529 39371529 C T SIRT2 Silent p.L252L 0.61 TCGA-94-7943-01 19 39734690 39734690 G C IFNL3 Silent p.P122P 0.50 TCGA-94-7943-01 19 39877158 39877158 C G PAF1 Missense_Mutation p.E383Q 0.06 tolerated(0.22) unknown(0) TCGA-94-7943-01 19 40319219 40319219 G T DYRK1B Missense_Mutation p.H175Q 0.28 tolerated(0.07) benign(0.015) TCGA-94-7943-01 19 41292808 41292808 C G RAB4B Silent p.L194L 0.09 TCGA-94-7943-01 19 42085901 42085901 A G CEACAM21 Missense_Mutation p.E207G 0.10 deleterious(0.04) possibly_damaging(0.826) TCGA-94-7943-01 19 42583506 42583506 C T ZNF574 Nonsense_Mutation p.Q250* 0.09 TCGA-94-7943-01 19 45971749 45971749 C T FOSB 5'UTR 0.54 TCGA-94-7943-01 19 46815760 46815760 C T HIF3A Intron 0.19 TCGA-94-7943-01 19 50473422 50473422 G A SIGLEC16 RNA 0.29 TCGA-94-7943-01 19 50939954 50939954 C T MYBPC2 Silent p.D142D 0.18 TCGA-94-7943-01 19 54310882 54310882 G A NLRP12 Missense_Mutation p.H704Y 0.07 tolerated(0.22) benign(0.009) TCGA-94-7943-01 19 56422075 56422075 C T NLRP13 Missense_Mutation p.M712I 0.05 tolerated(0.94) benign(0.002) TCGA-94-7943-01 19 8959659 8959659 T A MUC16 Missense_Mutation p.Q14491H 0.47 benign(0.262) TCGA-94-7943-01 1 113652914 113652914 C G LRIG2 Missense_Mutation p.L510V 0.27 tolerated(0.63) benign(0.264) TCGA-94-7943-01 1 115130447 115130447 C T DENND2C Missense_Mutation p.R853H 0.17 deleterious(0) possibly_damaging(0.479) TCGA-94-7943-01 1 1262238 1262238 G C GLTPD1 5'UTR 0.53 TCGA-94-7943-01 1 149784921 149784921 C T HIST2H3D Missense_Mutation p.E106K 0.19 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-94-7943-01 1 150255911 150255911 T A C1orf51 Silent p.S78S 0.13 TCGA-94-7943-01 1 153947172 153947172 G A JTB Nonsense_Mutation p.Q142* 0.38 TCGA-94-7943-01 1 155340643 155340643 C A ASH1L Missense_Mutation p.R2155I 0.42 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-94-7943-01 1 155932494 155932494 C A ARHGEF2 Missense_Mutation p.A331S 0.15 deleterious(0.02) possibly_damaging(0.458) TCGA-94-7943-01 1 160722009 160722009 G C SLAMF7 Missense_Mutation p.V303L 0.77 tolerated(1) benign(0) TCGA-94-7943-01 1 161953899 161953899 C T OLFML2B Missense_Mutation p.E607K 0.33 deleterious(0) probably_damaging(0.958) TCGA-94-7943-01 1 196799653 196799653 C A CFHR1 Missense_Mutation p.P211T 0.79 deleterious(0) probably_damaging(0.999) TCGA-94-7943-01 1 201982373 201982373 G T ELF3 Missense_Mutation p.R251L 0.11 deleterious(0.04) probably_damaging(0.998) TCGA-94-7943-01 1 201984450 201984450 G A ELF3 Silent p.%3D 0.16 TCGA-94-7943-01 1 202910822 202910822 G A ADIPOR1 Missense_Mutation p.S336F 0.06 deleterious(0) possibly_damaging(0.874) TCGA-94-7943-01 1 210003450 210003450 T C DIEXF Intron 0.29 TCGA-94-7943-01 1 216166443 216166443 C T USH2A Missense_Mutation p.E2242K 0.36 possibly_damaging(0.518) TCGA-94-7943-01 1 222713606 222713606 G A HHIPL2 Missense_Mutation p.S399L 0.14 tolerated(0.18) benign(0.001) TCGA-94-7943-01 1 235972421 235972421 A T LYST Nonsense_Mutation p.L566* 0.35 TCGA-94-7943-01 1 247836006 247836006 G T OR13G1 Missense_Mutation p.T113N 0.13 deleterious(0) probably_damaging(0.997) TCGA-94-7943-01 1 84956016 84956016 C G RPF1 Silent p.L159L 0.16 TCGA-94-7943-01 20 23065560 23065560 G A CD93 Nonsense_Mutation p.Q424* 0.07 TCGA-94-7943-01 20 2582785 2582785 T G TMC2 Missense_Mutation p.S417R 0.33 tolerated(0.07) probably_damaging(0.957) TCGA-94-7943-01 20 33762533 33762533 C G PROCR Missense_Mutation p.I33M 0.17 deleterious(0.05) benign(0.081) TCGA-94-7943-01 20 3651738 3651738 C G ADAM33 Missense_Mutation p.G719R 0.50 tolerated(0.07) probably_damaging(0.98) TCGA-94-7943-01 20 42602031 42602031 G T TOX2 Missense_Mutation p.G42W 0.38 deleterious(0) probably_damaging(0.999) TCGA-94-7943-01 20 4705432 4705432 G A PRND Missense_Mutation p.E79K 0.07 deleterious_low_confidence(0.03) possibly_damaging(0.881) TCGA-94-7943-01 20 47850206 47850206 C A DDX27 Silent p.I442I 0.04 TCGA-94-7943-01 20 49354449 49354449 A T PARD6B Missense_Mutation p.E41V 0.05 deleterious(0) possibly_damaging(0.833) TCGA-94-7943-01 20 53205111 53205111 C A DOK5 Silent p.T88T 0.26 TCGA-94-7943-01 20 54972771 54972771 G A CSTF1 Silent p.V173V 0.09 TCGA-94-7943-01 20 62229133 62229133 G A GMEB2 Silent p.I146I 0.05 TCGA-94-7943-01 21 32410666 32410666 G A KRTAP19-8 Missense_Mutation p.R33C 0.34 deleterious_low_confidence(0.03) unknown(0) TCGA-94-7943-01 21 40823899 40823899 G A SH3BGR Silent p.V22V 0.16 TCGA-94-7943-01 2 109086317 109086317 G C GCC2 Missense_Mutation p.D178H 0.15 tolerated(0.22) possibly_damaging(0.541) TCGA-94-7943-01 2 130899768 130899768 C G CCDC74B Missense_Mutation p.R161P 0.35 tolerated(0.24) benign(0.002) TCGA-94-7943-01 2 136630267 136630267 C T MCM6 Missense_Mutation p.R85K 0.11 deleterious(0.01) probably_damaging(0.931) TCGA-94-7943-01 2 141143461 141143461 C A LRP1B Splice_Site p.X3511_splice 0.15 TCGA-94-7943-01 2 141777537 141777537 C A LRP1B Missense_Mutation p.G642C 0.42 probably_damaging(0.991) TCGA-94-7943-01 2 166912953 166912953 C G SCN1A Missense_Mutation p.M147I 0.37 tolerated(0.1) benign(0.002) TCGA-94-7943-01 2 172017041 172017041 G C TLK1 5'UTR 0.55 TCGA-94-7943-01 2 178098945 178098945 G C NFE2L2 Missense_Mutation p.R34G 0.44 deleterious(0) probably_damaging(1) TCGA-94-7943-01 2 178402972 178402972 C G AGPS 3'UTR 0.35 TCGA-94-7943-01 2 191874730 191874730 C G STAT1 Intron 0.24 TCGA-94-7943-01 2 203421083 203421083 C G BMPR2 Missense_Mutation p.R899G 0.50 tolerated_low_confidence(0.2) benign(0.051) TCGA-94-7943-01 2 20511337 20511337 G C PUM2 Missense_Mutation p.L146V 0.42 tolerated_low_confidence(0.08) possibly_damaging(0.452) TCGA-94-7943-01 2 209045988 209045988 C G C2orf80 Missense_Mutation p.R83T 0.05 tolerated(0.57) benign(0.014) TCGA-94-7943-01 2 239038780 239038780 G A ESPNL Silent p.G475G 0.16 TCGA-94-7943-01 2 25965936 25965936 G A ASXL2 Silent p.F1090F 0.11 TCGA-94-7943-01 2 37494627 37494627 C G PRKD3 Missense_Mutation p.M610I 0.36 deleterious(0.03) benign(0.086) TCGA-94-7943-01 2 54041743 54041743 G C ERLEC1 Silent p.V430V 0.10 TCGA-94-7943-01 2 65298849 65298849 C T CEP68 Missense_Mutation p.L207F 0.21 tolerated(0.06) benign(0.178) TCGA-94-7943-01 2 74684828 74684828 C G INO80B Nonsense_Mutation p.S303* 0.15 TCGA-94-7943-01 2 79313632 79313632 T A REG1B Splice_Site p.X62_splice 0.33 TCGA-94-7943-01 3 100604381 100604381 A G ABI3BP Missense_Mutation p.V239A 0.12 tolerated(0.05) benign(0.153) TCGA-94-7943-01 3 107096886 107096886 C G CCDC54 Missense_Mutation p.T151R 0.08 tolerated(0.22) benign(0.001) TCGA-94-7943-01 3 109052820 109052820 C A DPPA4 Silent p.S25S 0.16 TCGA-94-7943-01 3 113442283 113442283 C T NAA50 Missense_Mutation p.R84Q 0.15 deleterious(0) probably_damaging(1) TCGA-94-7943-01 3 121195551 121195551 G A POLQ Nonsense_Mutation p.Q2081* 0.10 TCGA-94-7943-01 3 122578959 122578959 C T DIRC2 Missense_Mutation p.L350F 0.07 deleterious(0.01) probably_damaging(0.995) TCGA-94-7943-01 3 124117674 124117674 G A KALRN Missense_Mutation p.D766N 0.20 tolerated(0.08) benign(0.138) TCGA-94-7943-01 3 126270878 126270878 C T C3orf22 Silent p.Q59Q 0.09 TCGA-94-7943-01 3 127358323 127358323 G A PODXL2 Silent p.E102E 0.12 TCGA-94-7943-01 3 127642210 127642210 G A KBTBD12 Silent p.Q102Q 0.07 TCGA-94-7943-01 3 136183753 136183753 G A STAG1 Missense_Mutation p.A428V 0.06 deleterious(0) probably_damaging(0.999) TCGA-94-7943-01 3 137991954 137991954 G A ARMC8 Missense_Mutation p.R528H 0.04 deleterious(0.01) benign(0.441) TCGA-94-7943-01 3 146173239 146173239 G T PLSCR2 Missense_Mutation p.F109L 0.51 tolerated(1) benign(0.001) TCGA-94-7943-01 3 151131030 151131030 G A MED12L Missense_Mutation p.D2047N 0.20 tolerated_low_confidence(0.21) benign(0.086) TCGA-94-7943-01 3 167508235 167508235 C G SERPINI1 Missense_Mutation p.A109G 0.37 deleterious(0) probably_damaging(0.999) TCGA-94-7943-01 3 195395454 195395454 G T SDHAP2 RNA 0.12 TCGA-94-7943-01 3 42739149 42739149 C G HHATL Missense_Mutation p.R239T 0.20 tolerated(0.09) possibly_damaging(0.864) TCGA-94-7943-01 3 43389686 43389686 G T SNRK Missense_Mutation p.E645D 0.73 deleterious_low_confidence(0.01) benign(0.082) TCGA-94-7943-01 3 97806765 97806765 T C OR5AC2 Missense_Mutation p.V250A 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-94-7943-01 3 97806766 97806766 C T OR5AC2 Silent p.V250V 0.12 TCGA-94-7943-01 3 98073226 98073226 T A OR5K4 Missense_Mutation p.F177I 0.14 deleterious(0.01) possibly_damaging(0.521) TCGA-94-7943-01 4 169433050 169433050 G A PALLD Missense_Mutation p.S132N 0.08 tolerated(0.14) possibly_damaging(0.841) TCGA-94-7943-01 4 6107651 6107651 C A JAKMIP1 Missense_Mutation p.R58L 0.50 deleterious(0.01) probably_damaging(0.994) TCGA-94-7943-01 5 126860496 126860496 C T PRRC1 Missense_Mutation p.S126L 0.04 tolerated_low_confidence(0.54) benign(0.001) TCGA-94-7943-01 5 127638769 127638769 C A FBN2 Missense_Mutation p.C1938F 0.25 deleterious(0) probably_damaging(0.986) TCGA-94-7943-01 5 137661560 137661560 C - CDC25C Frame_Shift_Del p.D135Tfs*29 0.13 TCGA-94-7943-01 5 149001296 149001296 A T ARHGEF37 Nonsense_Mutation p.K336* 0.24 TCGA-94-7943-01 5 149576363 149576363 C T SLC6A7 Missense_Mutation p.S101F 0.19 deleterious(0) possibly_damaging(0.745) TCGA-94-7943-01 5 21459666 21459666 G T GUSBP1 RNA 0.41 TCGA-94-7943-01 5 72168521 72168521 A T TNPO1 Missense_Mutation p.M218L 0.32 tolerated(0.33) benign(0.001) TCGA-94-7943-01 6 119611860 119611860 C T MAN1A1 Silent p.L295L 0.28 TCGA-94-7943-01 6 12163610 12163610 C T HIVEP1 Missense_Mutation p.P2358L 0.25 tolerated(0.24) benign(0.004) TCGA-94-7943-01 6 152651410 152651410 C A SYNE1 Missense_Mutation p.V4804L 0.34 benign(0.059) TCGA-94-7943-01 6 165827133 165827133 C A PDE10A Silent p.L378L 0.20 TCGA-94-7943-01 6 27839850 27839850 C T HIST1H3I Missense_Mutation p.D82N 0.10 deleterious_low_confidence(0.01) benign(0.051) TCGA-94-7943-01 6 31753383 31753383 C T VARS Missense_Mutation p.E410K 0.15 deleterious(0.02) benign(0.399) TCGA-94-7943-01 6 32975299 32975299 G A HLA-DOA Silent p.I134I 0.19 TCGA-94-7943-01 6 51613205 51613205 T A PKHD1 Missense_Mutation p.Q3070L 0.27 deleterious(0.01) probably_damaging(0.984) TCGA-94-7943-01 6 56047331 56047331 G C COL21A1 Nonsense_Mutation p.S29* 0.18 TCGA-94-7943-01 6 84055911 84055911 T A ME1 Missense_Mutation p.D194V 0.27 deleterious(0) probably_damaging(1) TCGA-94-7943-01 7 101957824 101957824 G T SH2B2 Nonsense_Mutation p.E490* 0.45 TCGA-94-7943-01 7 104783736 104783736 C G SRPK2 Missense_Mutation p.K285N 0.27 deleterious(0.02) possibly_damaging(0.756) TCGA-94-7943-01 7 124532434 124532434 C A POT1 Missense_Mutation p.V4F 0.26 deleterious_low_confidence(0.02) benign(0.054) TCGA-94-7943-01 7 150553642 150553642 G A AOC1 Silent p.R28R 0.13 TCGA-94-7943-01 7 150845981 150845981 G T GBX1 Silent p.R263R 0.48 TCGA-94-7943-01 7 45104163 45104163 C T CCM2 Silent p.I151I 0.11 TCGA-94-7943-01 7 57529435 57529435 T A ZNF716 Missense_Mutation p.L423H 0.42 deleterious(0.01) probably_damaging(0.955) TCGA-94-7943-01 7 64168647 64168647 G T ZNF107 Missense_Mutation p.K655N 0.51 deleterious(0.05) possibly_damaging(0.846) TCGA-94-7943-01 7 89856581 89856581 C A STEAP2 Silent p.A263A 0.07 TCGA-94-7943-01 7 91726643 91726643 G A AKAP9 Missense_Mutation p.R3457K 0.09 benign(0.008) TCGA-94-7943-01 7 91936884 91936884 G A ANKIB1 Missense_Mutation p.E134K 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-94-7943-01 7 98608810 98608810 C T TRRAP Silent p.L3678L 0.16 TCGA-94-7943-01 7 98609706 98609706 C T TRRAP Silent p.L3770L 0.20 TCGA-94-7943-01 7 99264615 99264615 G T CYP3A5 Nonsense_Mutation p.S131* 0.15 TCGA-94-7943-01 8 110397765 110397765 G T PKHD1L1 Splice_Site p.X159_splice 0.39 TCGA-94-7943-01 8 113697925 113697925 G A CSMD3 Missense_Mutation p.T731I 0.42 tolerated(1) probably_damaging(1) TCGA-94-7943-01 8 139164700 139164700 G C FAM135B Missense_Mutation p.S673C 0.29 deleterious(0.04) probably_damaging(0.94) TCGA-94-7943-01 8 144798569 144798569 C G MAPK15 Missense_Mutation p.R8G 0.21 deleterious(0) benign(0.089) TCGA-94-7943-01 8 145640394 145640394 G A SLC39A4 Silent p.L256L 0.12 TCGA-94-7943-01 8 16921672 16921672 C G MICU3 Missense_Mutation p.S154C 0.07 deleterious(0) probably_damaging(0.993) TCGA-94-7943-01 8 20068685 20068685 T C ATP6V1B2 Intron 0.10 TCGA-94-7943-01 8 80942415 80942415 G A MRPS28 Silent p.F23F 0.14 TCGA-94-7943-01 8 81412389 81412389 G A ZBTB10 Missense_Mutation p.E545K 0.18 deleterious(0.01) possibly_damaging(0.571) TCGA-94-7943-01 8 81599508 81599508 C T ZNF704 Missense_Mutation p.E171K 0.12 deleterious(0.01) benign(0.281) TCGA-94-7943-01 9 109691428 109691428 C T ZNF462 Silent p.I1745I 0.59 TCGA-94-7943-01 9 116930718 116930718 G A COL27A1 Missense_Mutation p.A295T 0.07 unknown(0) TCGA-94-7943-01 9 130207455 130207455 G C ZNF79 Missense_Mutation p.Q492H 0.06 deleterious(0.01) probably_damaging(0.925) TCGA-94-7943-01 9 137716583 137716583 C T COL5A1 Silent p.F1612F 0.25 TCGA-94-7943-01 9 137777195 137777195 G A FCN2 Missense_Mutation p.D138N 0.33 deleterious(0.02) benign(0.267) TCGA-94-7943-01 9 36170588 36170588 C T CCIN Silent p.I363I 0.65 TCGA-94-7943-01 X 107979136 107979136 C A IRS4 Missense_Mutation p.V147L 0.60 deleterious(0.01) probably_damaging(0.995) TCGA-94-7943-01 X 107979323 107979323 G C IRS4 Nonsense_Mutation p.Y84* 0.74 TCGA-94-7943-01 X 125299720 125299720 C T DCAF12L2 Missense_Mutation p.R63Q 0.14 tolerated(0.66) benign(0.003) TCGA-94-7943-01 X 129518621 129518621 G A GPR119 Silent p.L267L 0.70 TCGA-94-7943-01 X 130219005 130219005 G A ARHGAP36 Missense_Mutation p.D308N 0.36 tolerated(0.16) possibly_damaging(0.854) TCGA-94-7943-01 X 89177344 89177344 C T TGIF2LX Missense_Mutation p.S87L 0.23 deleterious(0) possibly_damaging(0.516) TCGA-94-8035-01 10 24790421 24790421 A T KIAA1217 Missense_Mutation p.R650W 0.31 deleterious(0) probably_damaging(0.954) TCGA-94-8035-01 10 27406561 27406561 C G YME1L1 Missense_Mutation p.D612H 0.07 tolerated(0.06) probably_damaging(0.989) TCGA-94-8035-01 10 63445878 63445878 G C C10orf107 Missense_Mutation p.K50N 0.28 tolerated(0.06) possibly_damaging(0.453) TCGA-94-8035-01 10 71266644 71266644 G A TSPAN15 Silent p.E265E 0.19 TCGA-94-8035-01 10 72539488 72539488 C T TBATA Silent p.G96G 0.20 TCGA-94-8035-01 10 84744944 84744944 G T NRG3 Missense_Mutation p.L558F 0.23 tolerated(0.07) possibly_damaging(0.668) TCGA-94-8035-01 11 108122735 108122735 A T ATM Silent p.T593T 0.24 TCGA-94-8035-01 11 124134820 124134820 A T OR8G5 Missense_Mutation p.H33L 0.23 tolerated_low_confidence(0.47) benign(0.002) TCGA-94-8035-01 11 130064107 130064107 C G ST14 Silent p.L313L 0.09 TCGA-94-8035-01 11 17742464 17742464 C A MYOD1 Missense_Mutation p.P216T 0.24 deleterious(0.01) probably_damaging(0.986) TCGA-94-8035-01 11 49974157 49974157 G A OR4C13 Silent p.L61L 0.29 TCGA-94-8035-01 11 51411665 51411665 A G OR4A5 Missense_Mutation p.V244A 0.29 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-94-8035-01 11 55036762 55036762 C G TRIM48 Missense_Mutation p.A208G 0.15 tolerated(0.07) benign(0.002) TCGA-94-8035-01 11 55111216 55111216 C - OR4A16 Frame_Shift_Del p.P181Hfs*13 0.28 TCGA-94-8035-01 11 5629604 5629604 T C TRIM6 Silent p.D279D 0.22 TCGA-94-8035-01 11 56345141 56345141 G T OR5M10 Missense_Mutation p.D19E 0.19 tolerated(0.08) benign(0.023) TCGA-94-8035-01 11 57982597 57982597 C T OR1S1 Silent p.L127L 0.06 TCGA-94-8035-01 11 62124555 62124555 A C ASRGL1 Missense_Mutation p.N144H 0.41 tolerated(0.07) possibly_damaging(0.726) TCGA-94-8035-01 11 64132839 64132839 G T RPS6KA4 Nonsense_Mutation p.E325* 0.25 TCGA-94-8035-01 11 64665573 64665573 C A ATG2A Nonsense_Mutation p.E1615* 0.16 TCGA-94-8035-01 11 65546810 65546810 C A AP5B1 Missense_Mutation p.G385V 0.18 deleterious(0) possibly_damaging(0.813) TCGA-94-8035-01 11 89911173 89911173 C T NAALAD2 Silent p.I582I 0.05 TCGA-94-8035-01 12 104186973 104186973 C A NT5DC3 Nonsense_Mutation p.E330* 0.15 TCGA-94-8035-01 12 11149944 11149944 C A TAS2R20 Missense_Mutation p.L177F 0.19 deleterious(0.03) possibly_damaging(0.77) TCGA-94-8035-01 12 112743867 112743867 C A HECTD4 Splice_Site p.X301_splice 0.19 TCGA-94-8035-01 12 117175643 117175643 C G C12orf49 Silent p.L21L 0.11 TCGA-94-8035-01 12 122794351 122794352 - T CLIP1 Frame_Shift_Ins p.E1185Gfs*24 0.17 TCGA-94-8035-01 12 15704559 15704559 C T PTPRO Missense_Mutation p.L838F 0.11 tolerated(0.17) benign(0.01) TCGA-94-8035-01 12 27235311 27235311 C T C12orf71 Missense_Mutation p.E36K 0.17 deleterious(0.03) possibly_damaging(0.509) TCGA-94-8035-01 12 29608335 29608335 C T OVCH1 Missense_Mutation p.D762N 0.17 deleterious(0.03) probably_damaging(0.969) TCGA-94-8035-01 12 49108298 49108298 C T CCNT1 Silent p.L57L 0.16 TCGA-94-8035-01 12 54687053 54687053 A T NFE2 Missense_Mutation p.F76Y 0.30 tolerated(0.81) benign(0.002) TCGA-94-8035-01 12 57032925 57032925 T A ATP5B Missense_Mutation p.K485M 0.21 deleterious_low_confidence(0.01) benign(0.266) TCGA-94-8035-01 12 7869604 7869604 G A DPPA3 Silent p.V137V 0.23 TCGA-94-8035-01 13 33332752 33332753 CC - PDS5B Frame_Shift_Del p.P1091Gfs*11 0.16 TCGA-94-8035-01 14 20296389 20296389 C A OR4N2 Missense_Mutation p.P261H 0.15 deleterious(0) probably_damaging(0.995) TCGA-94-8035-01 14 20482625 20482625 G T OR4K14 Missense_Mutation p.A243E 0.17 deleterious(0) probably_damaging(0.955) TCGA-94-8035-01 14 33147613 33147613 C T AKAP6 Nonsense_Mutation p.R943* 0.04 TCGA-94-8035-01 14 34269142 34269142 C T NPAS3 Silent p.G543G 0.05 TCGA-94-8035-01 14 52899095 52899095 C G TXNDC16 Missense_Mutation p.R802T 0.05 tolerated_low_confidence(0.34) benign(0.004) TCGA-94-8035-01 14 52937260 52937260 C A TXNDC16 Missense_Mutation p.G484V 0.28 deleterious(0) possibly_damaging(0.833) TCGA-94-8035-01 14 61186723 61186723 G C SIX4 Missense_Mutation p.S435C 0.21 deleterious(0.03) possibly_damaging(0.781) TCGA-94-8035-01 14 64679609 64679609 C T SYNE2 Silent p.S6314S 0.26 TCGA-94-8035-01 14 65268072 65268072 G T SPTB Missense_Mutation p.H232N 0.18 deleterious(0.04) probably_damaging(0.969) TCGA-94-8035-01 14 94849474 94849474 T C SERPINA1 Missense_Mutation p.K34R 0.20 deleterious(0.05) benign(0.09) TCGA-94-8035-01 15 23811059 23811059 C A MKRN3 Missense_Mutation p.P44T 0.23 tolerated(0.38) benign(0) TCGA-94-8035-01 15 28483867 28483867 A G HERC2 Missense_Mutation p.I1210T 0.18 benign(0.159) TCGA-94-8035-01 15 45402146 45402146 T C DUOX2 Missense_Mutation p.N358S 0.27 tolerated(0.39) benign(0.011) TCGA-94-8035-01 15 52564917 52564917 C A MYO5C Missense_Mutation p.V204F 0.10 tolerated(0.26) possibly_damaging(0.811) TCGA-94-8035-01 15 52620160 52620160 T C MYO5A Silent p.L1508L 0.22 TCGA-94-8035-01 15 54306770 54306770 G T UNC13C Missense_Mutation p.C557F 0.29 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-94-8035-01 15 55664009 55664009 C A CCPG1 Nonsense_Mutation p.G230* 0.20 TCGA-94-8035-01 15 55664010 55664010 C A CCPG1 Missense_Mutation p.M229I 0.20 deleterious(0.04) probably_damaging(0.997) TCGA-94-8035-01 15 78293974 78293974 T C TBC1D2B Missense_Mutation p.I895V 0.31 tolerated(0.17) benign(0.015) TCGA-94-8035-01 16 10532034 10532034 A G ATF7IP2 Missense_Mutation p.Q346R 0.27 tolerated(0.07) benign(0.005) TCGA-94-8035-01 16 23224198 23224198 C T SCNN1G Missense_Mutation p.P472S 0.08 deleterious(0) probably_damaging(1) TCGA-94-8035-01 16 27751381 27751381 A G KIAA0556 Missense_Mutation p.K588R 0.30 tolerated(0.46) benign(0.065) TCGA-94-8035-01 16 57060554 57060554 G T NLRC5 Missense_Mutation p.G567C 0.18 deleterious(0) probably_damaging(1) TCGA-94-8035-01 16 72991449 72991449 G C ZFHX3 Missense_Mutation p.L866V 0.21 probably_damaging(0.978) TCGA-94-8035-01 16 75203153 75203153 G T ZFP1 Missense_Mutation p.V49L 0.25 tolerated(0.14) benign(0.145) TCGA-94-8035-01 17 10417215 10417215 G C MYH1 Missense_Mutation p.Q222E 0.26 deleterious(0) probably_damaging(0.998) TCGA-94-8035-01 17 27959375 27959375 G C SSH2 Missense_Mutation p.P919R 0.22 tolerated_low_confidence(0.39) benign(0.001) TCGA-94-8035-01 17 33288352 33288352 C T CCT6B Missense_Mutation p.A21T 0.07 tolerated(0.19) benign(0.186) TCGA-94-8035-01 17 34173983 34173983 G C TAF15 3'UTR 0.08 TCGA-94-8035-01 17 37922256 37922259 GACG - IKZF3 Frame_Shift_Del p.V439Kfs*2 0.16 TCGA-94-8035-01 17 40831772 40831772 G A CCR10 Silent p.S296S 0.10 TCGA-94-8035-01 17 48595046 48595046 G A MYCBPAP Missense_Mutation p.R195Q 0.23 tolerated(0.16) benign(0.089) TCGA-94-8035-01 17 51900618 51900618 C A KIF2B Missense_Mutation p.T75N 0.28 tolerated(0.22) benign(0.027) TCGA-94-8035-01 17 72875671 72875671 G A FADS6 Missense_Mutation p.R257W 0.10 deleterious(0) probably_damaging(1) TCGA-94-8035-01 17 7324897 7324897 G T SPEM1 Missense_Mutation p.W301C 0.08 deleterious(0) probably_damaging(0.99) TCGA-94-8035-01 17 73738665 73738665 G A ITGB4 Missense_Mutation p.A929T 0.32 deleterious(0) probably_damaging(0.999) TCGA-94-8035-01 17 7578259 7578259 A C TP53 Missense_Mutation p.V197G 0.21 deleterious(0) probably_damaging(1) TCGA-94-8035-01 17 79060343 79060343 G T BAIAP2 Missense_Mutation p.S151I 0.22 deleterious(0) probably_damaging(0.999) TCGA-94-8035-01 18 43503302 43503302 G C EPG5 Missense_Mutation p.L924V 0.27 tolerated(0.69) probably_damaging(0.953) TCGA-94-8035-01 18 51900583 51900583 G C C18orf54 Splice_Site p.X326_splice 0.21 TCGA-94-8035-01 18 55020218 55020218 G T ST8SIA3 Silent p.P47P 0.20 TCGA-94-8035-01 18 580871 580871 G A CETN1 Missense_Mutation p.G155S 0.11 deleterious(0) probably_damaging(0.997) TCGA-94-8035-01 18 70532076 70532076 G T NETO1 Missense_Mutation p.P63T 0.22 deleterious(0) probably_damaging(1) TCGA-94-8035-01 19 19738042 19738042 T C LPAR2 Missense_Mutation p.N18D 0.16 deleterious(0.03) benign(0.414) TCGA-94-8035-01 19 36303099 36303099 G T PRODH2 Silent p.P225P 0.12 TCGA-94-8035-01 19 36349458 36349458 G A KIRREL2 Silent p.L120L 0.20 TCGA-94-8035-01 19 3644099 3644099 G A PIP5K1C Missense_Mutation p.T499M 0.18 tolerated(0.13) possibly_damaging(0.902) TCGA-94-8035-01 19 37733678 37733678 T A ZNF383 Missense_Mutation p.S180R 0.27 tolerated(0.59) possibly_damaging(0.45) TCGA-94-8035-01 19 44590987 44590987 G C ZNF284 Missense_Mutation p.E452D 0.23 deleterious(0) probably_damaging(0.963) TCGA-94-8035-01 19 47593320 47593320 C T ZC3H4 Missense_Mutation p.D207N 0.04 possibly_damaging(0.798) TCGA-94-8035-01 19 53473462 53473462 C T ZNF702P RNA 0.10 TCGA-94-8035-01 19 54313514 54313514 C T NLRP12 Missense_Mutation p.D467N 0.21 deleterious(0.01) benign(0.164) TCGA-94-8035-01 19 54664935 54664935 G C TMC4 Missense_Mutation p.F589L 0.12 deleterious(0.01) benign(0.345) TCGA-94-8035-01 19 55177855 55177855 G T LILRB4 Missense_Mutation p.S319I 0.20 deleterious(0) benign(0.143) TCGA-94-8035-01 19 58102603 58102603 G T ZIK1 Missense_Mutation p.C475F 0.16 tolerated(0.6) possibly_damaging(0.459) TCGA-94-8035-01 19 58565156 58565156 T G ZSCAN1 Missense_Mutation p.C322G 0.13 deleterious(0) probably_damaging(0.998) TCGA-94-8035-01 19 7125509 7125509 C T INSR Missense_Mutation p.E1015K 0.13 deleterious(0.01) possibly_damaging(0.775) TCGA-94-8035-01 19 9065197 9065197 A T MUC16 Missense_Mutation p.S7417T 0.22 unknown(0) TCGA-94-8035-01 19 9407068 9407068 T C ZNF699 Missense_Mutation p.K338E 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-94-8035-01 19 9577209 9577209 C A ZNF560 3'UTR 0.21 TCGA-94-8035-01 1 1222275 1222275 C - SCNN1D Frame_Shift_Del p.F349Sfs*12 0.41 TCGA-94-8035-01 1 149783732 149783732 G A HIST2H2BF Silent p.V49V 0.04 TCGA-94-8035-01 1 149884991 149884991 C A SV2A Silent p.G134G 0.24 TCGA-94-8035-01 1 155932902 155932902 A C ARHGEF2 Missense_Mutation p.L266R 0.24 deleterious(0.01) possibly_damaging(0.895) TCGA-94-8035-01 1 157497657 157497657 G T FCRL5 Silent p.L570L 0.08 TCGA-94-8035-01 1 158326383 158326383 T A CD1E Splice_Site p.X333_splice 0.32 TCGA-94-8035-01 1 158390489 158390489 A T OR10K2 Missense_Mutation p.H56Q 0.19 tolerated(0.07) probably_damaging(0.998) TCGA-94-8035-01 1 158609763 158609763 T A SPTA1 Missense_Mutation p.H1591L 0.15 tolerated(0.6) benign(0.001) TCGA-94-8035-01 1 158670313 158670313 C T OR6K2 Missense_Mutation p.V44I 0.14 tolerated(0.7) benign(0.002) TCGA-94-8035-01 1 15900112 15900112 G A AGMAT 3'UTR 0.14 TCGA-94-8035-01 1 160098589 160098589 A G ATP1A2 Missense_Mutation p.M389V 0.30 tolerated(0.12) benign(0.1) TCGA-94-8035-01 1 160162646 160162646 G A CASQ1 Missense_Mutation p.E112K 0.18 tolerated(1) benign(0.001) TCGA-94-8035-01 1 161761316 161761316 G T ATF6 Missense_Mutation p.R158M 0.26 tolerated(0.12) benign(0.003) TCGA-94-8035-01 1 172007478 172007478 G T DNM3 Missense_Mutation p.R290L 0.22 deleterious(0) possibly_damaging(0.831) TCGA-94-8035-01 1 177250094 177250094 G T BRINP2 Silent p.G594G 0.17 TCGA-94-8035-01 1 185159767 185159767 C G SWT1 Missense_Mutation p.L506V 0.05 deleterious(0) probably_damaging(0.94) TCGA-94-8035-01 1 197404303 197404303 G A CRB1 Missense_Mutation p.G1104S 0.21 deleterious(0.03) probably_damaging(1) TCGA-94-8035-01 1 246810613 246810613 G A CNST Silent p.T370T 0.10 TCGA-94-8035-01 1 247150295 247150295 C A ZNF695 Missense_Mutation p.A508S 0.24 tolerated(0.34) benign(0.002) TCGA-94-8035-01 1 247921108 247921108 C T OR1C1 Missense_Mutation p.A201T 0.17 tolerated(1) benign(0.001) TCGA-94-8035-01 1 247978598 247978598 A C OR14A16 Missense_Mutation p.V145G 0.13 tolerated(0.66) benign(0.012) TCGA-94-8035-01 1 248005189 248005189 G - OR11L1 Frame_Shift_Del p.Q4Kfs*6 0.31 TCGA-94-8035-01 1 248813337 248813337 G T OR2T27 Silent p.P283P 0.13 TCGA-94-8035-01 1 248813339 248813339 G T OR2T27 Missense_Mutation p.P283T 0.13 deleterious(0.01) probably_damaging(0.993) TCGA-94-8035-01 1 33742072 33742072 G A ZNF362 Missense_Mutation p.A76T 0.24 tolerated(0.15) benign(0.001) TCGA-94-8035-01 1 34330136 34330136 A G HMGB4 Missense_Mutation p.N115S 0.26 tolerated(0.07) probably_damaging(0.957) TCGA-94-8035-01 1 3673334 3673334 C G CCDC27 Missense_Mutation p.F197L 0.11 tolerated(0.69) benign(0.007) TCGA-94-8035-01 1 3712525 3712525 G A LRRC47 Silent p.L172L 0.28 TCGA-94-8035-01 1 40778271 40778271 C T COL9A2 Missense_Mutation p.G105E 0.33 deleterious(0) unknown(0) TCGA-94-8035-01 1 45506128 45506128 G A ZSWIM5 Silent p.A564A 0.41 TCGA-94-8035-01 1 52991708 52991708 C A ZCCHC11 Missense_Mutation p.G82V 0.08 deleterious_low_confidence(0) possibly_damaging(0.571) TCGA-94-8035-01 1 93202016 93202016 A C EVI5 Missense_Mutation p.S74A 0.29 tolerated(0.16) benign(0.421) TCGA-94-8035-01 20 10622158 10622158 C A JAG1 Missense_Mutation p.D956Y 0.16 deleterious(0) possibly_damaging(0.817) TCGA-94-8035-01 20 17641140 17641140 C T RRBP1 Missense_Mutation p.D5N 0.24 deleterious(0) probably_damaging(0.986) TCGA-94-8035-01 20 31434546 31434546 G A MAPRE1 Silent p.Q240Q 0.24 TCGA-94-8035-01 20 3669876 3669876 T A SIGLEC1 Splice_Site p.X1666_splice 0.20 TCGA-94-8035-01 20 42907986 42907986 G A GDAP1L1 3'UTR 0.21 TCGA-94-8035-01 20 46281182 46281182 C T NCOA3 Nonsense_Mutation p.R1327* 0.25 TCGA-94-8035-01 20 51870682 51870682 G T TSHZ2 Nonsense_Mutation p.E229* 0.17 TCGA-94-8035-01 20 55027094 55027094 A C CASS4 Silent p.R288R 0.23 TCGA-94-8035-01 20 57768685 57768685 G A ZNF831 Missense_Mutation p.E871K 0.25 tolerated(0.67) benign(0.039) TCGA-94-8035-01 21 11097588 11097588 G T BAGE2 RNA 0.04 TCGA-94-8035-01 21 15554181 15554181 C G LIPI Splice_Site p.X202_splice 0.17 TCGA-94-8035-01 21 16339799 16339799 T C NRIP1 Missense_Mutation p.R239G 0.25 deleterious(0) probably_damaging(0.997) TCGA-94-8035-01 21 16340372 16340372 C T NRIP1 Missense_Mutation p.D48N 0.10 tolerated(0.25) benign(0.015) TCGA-94-8035-01 21 22710788 22710788 G T NCAM2 Silent p.G326G 0.32 TCGA-94-8035-01 21 43496300 43496300 G A UMODL1 Missense_Mutation p.R88K 0.20 tolerated(0.25) benign(0.14) TCGA-94-8035-01 22 21383448 21383448 A T SLC7A4 Missense_Mutation p.S602T 0.23 tolerated(0.32) benign(0) TCGA-94-8035-01 22 29092975 29092975 A C CHEK2 Missense_Mutation p.Y380D 0.17 deleterious(0) probably_damaging(1) TCGA-94-8035-01 22 33700252 33700252 C A LARGE Missense_Mutation p.D565Y 0.19 deleterious(0) probably_damaging(1) TCGA-94-8035-01 22 46669880 46669880 G A TTC38 Silent p.V93V 0.18 TCGA-94-8035-01 2 107040363 107040363 C T RGPD3 Missense_Mutation p.E1354K 0.02 deleterious(0) probably_damaging(0.998) TCGA-94-8035-01 2 112725805 112725805 C T MERTK Silent p.S312S 0.12 TCGA-94-8035-01 2 125204495 125204495 C A CNTNAP5 Missense_Mutation p.A300D 0.21 tolerated(0.11) benign(0.021) TCGA-94-8035-01 2 131976462 131976462 G T POTEE Missense_Mutation p.D163Y 0.17 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-94-8035-01 2 131995788 131995788 A G POTEE Missense_Mutation p.I407V 0.17 tolerated_low_confidence(0.1) benign(0.031) TCGA-94-8035-01 2 141598519 141598519 C A LRP1B Missense_Mutation p.K1694N 0.21 benign(0.403) TCGA-94-8035-01 2 160879311 160879311 G T PLA2R1 Missense_Mutation p.R387S 0.20 tolerated(0.23) benign(0.411) TCGA-94-8035-01 2 162711543 162711543 T A SLC4A10 Silent p.A160A 0.32 TCGA-94-8035-01 2 170063355 170063360 CATATG ATTTT LRP2 Frame_Shift_Del p.I2291Kfs*3 0.20 TCGA-94-8035-01 2 179430074 179430074 C T TTN Missense_Mutation p.E26929K 0.10 TCGA-94-8035-01 2 179604345 179604345 T A TTN Missense_Mutation p.N4539Y 0.11 TCGA-94-8035-01 2 233394759 233394759 C T CHRND Missense_Mutation p.R244C 0.23 deleterious(0) probably_damaging(0.998) TCGA-94-8035-01 2 234750265 234750265 C A HJURP Missense_Mutation p.L387F 0.19 tolerated(0.06) possibly_damaging(0.636) TCGA-94-8035-01 2 238494691 238494691 G C RAB17 Missense_Mutation p.A36G 0.17 deleterious(0) probably_damaging(0.977) TCGA-94-8035-01 2 27246219 27246219 C T MAPRE3 Silent p.F47F 0.05 TCGA-94-8035-01 2 27249237 27249237 G A MAPRE3 3'UTR 0.09 TCGA-94-8035-01 2 27426725 27426725 T A SLC5A6 Missense_Mutation p.Y339F 0.25 deleterious(0) possibly_damaging(0.491) TCGA-94-8035-01 2 3750139 3750139 A C ALLC Missense_Mutation p.K388Q 0.15 tolerated_low_confidence(0.15) benign(0.001) TCGA-94-8035-01 2 44053659 44053659 C T ABCG5 Silent p.K212K 0.12 TCGA-94-8035-01 2 46597010 46597010 G A EPAS1 Missense_Mutation p.R275H 0.12 deleterious(0.05) benign(0.436) TCGA-94-8035-01 2 63605646 63605646 T A WDPCP Splice_Site p.X542_splice 0.15 TCGA-94-8035-01 2 85662814 85662814 G A SH2D6 Missense_Mutation p.S93N 0.35 deleterious(0) probably_damaging(1) TCGA-94-8035-01 2 90044421 90044421 G C IGKV2D-24 Silent p.T114T 0.21 TCGA-94-8035-01 3 10401592 10401592 C A ATP2B2 Missense_Mutation p.K625N 0.06 deleterious(0.01) probably_damaging(0.928) TCGA-94-8035-01 3 108229381 108229381 T C MYH15 Missense_Mutation p.I19M 0.17 tolerated_low_confidence(0.23) benign(0) TCGA-94-8035-01 3 108409733 108409733 C T DZIP3 Missense_Mutation p.P1206S 0.15 tolerated_low_confidence(0.21) benign(0.004) TCGA-94-8035-01 3 135863954 135863954 A G PPP2R3A Silent p.L1133L 0.25 TCGA-94-8035-01 3 136573928 136573928 T C SLC35G2 Missense_Mutation p.L209S 0.25 deleterious(0) probably_damaging(1) TCGA-94-8035-01 3 142731078 142731078 A T U2SURP Silent p.G35G 0.19 TCGA-94-8035-01 3 16312549 16312549 C T OXNAD1 Silent p.L30L 0.33 TCGA-94-8035-01 3 167246966 167246966 C - WDR49 Frame_Shift_Del p.K409Sfs*23 0.15 TCGA-94-8035-01 3 170725020 170725020 C T SLC2A2 Missense_Mutation p.G177S 0.23 tolerated(0.29) possibly_damaging(0.588) TCGA-94-8035-01 3 173998476 173998476 A G NLGN1 Missense_Mutation p.I619V 0.29 tolerated(0.69) benign(0.002) TCGA-94-8035-01 3 178543529 178543529 G T KCNMB2 Silent p.L70L 0.48 TCGA-94-8035-01 3 195027333 195027333 G C ACAP2 Silent p.L341L 0.10 TCGA-94-8035-01 3 37695213 37695213 T C ITGA9 Silent p.F616F 0.30 TCGA-94-8035-01 3 38888643 38888643 A G SCN11A Missense_Mutation p.F1640L 0.31 deleterious(0) probably_damaging(0.994) TCGA-94-8035-01 3 89259312 89259312 C T EPHA3 Silent p.F152F 0.05 TCGA-94-8035-01 4 100264012 100264012 C A ADH1C Missense_Mutation p.K256N 0.11 benign(0.286) TCGA-94-8035-01 4 10100747 10100747 C T WDR1 Silent p.L82L 0.06 TCGA-94-8035-01 4 25849025 25849025 G A SEL1L3 Silent p.I208I 0.33 TCGA-94-8035-01 4 68919707 68919707 A T TMPRSS11F Missense_Mutation p.C413S 0.53 deleterious(0) probably_damaging(0.999) TCGA-94-8035-01 4 71471971 71471971 G A AMBN Missense_Mutation p.E290K 0.56 deleterious(0.04) benign(0.079) TCGA-94-8035-01 5 140802784 140802784 G T PCDHGA11 Missense_Mutation p.A664S 0.26 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-94-8035-01 5 150056317 150056317 G A MYOZ3 Silent p.R212R 0.23 TCGA-94-8035-01 5 180475111 180475111 G A BTNL9 Silent p.P98P 0.18 TCGA-94-8035-01 5 22078560 22078560 C A CDH12 Nonsense_Mutation p.G76* 0.13 TCGA-94-8035-01 5 22078735 22078735 T C CDH12 Silent p.G17G 0.04 TCGA-94-8035-01 5 24487989 24487989 C A CDH10 Missense_Mutation p.R717M 0.34 deleterious(0) probably_damaging(0.99) TCGA-94-8035-01 5 5200374 5200374 A C ADAMTS16 Missense_Mutation p.K481N 0.05 deleterious(0.04) possibly_damaging(0.827) TCGA-94-8035-01 6 135239674 135239674 C A ALDH8A1 Missense_Mutation p.W448L 0.41 deleterious(0) probably_damaging(1) TCGA-94-8035-01 6 135239675 135239675 A C ALDH8A1 Missense_Mutation p.W448G 0.41 deleterious(0) probably_damaging(1) TCGA-94-8035-01 6 138607863 138607863 G T KIAA1244 Silent p.L865L 0.21 TCGA-94-8035-01 6 139563699 139563699 G A TXLNB Silent p.R673R 0.20 TCGA-94-8035-01 6 142691628 142691628 T C GPR126 Missense_Mutation p.V256A 0.16 tolerated(0.26) benign(0.007) TCGA-94-8035-01 6 150005370 150005370 G T LATS1 Silent p.I285I 0.19 TCGA-94-8035-01 6 160448238 160448238 C G IGF2R Nonsense_Mutation p.S223* 0.11 TCGA-94-8035-01 6 165715089 165715089 G T C6orf118 Missense_Mutation p.A241E 0.19 deleterious(0.02) possibly_damaging(0.818) TCGA-94-8035-01 6 26392869 26392869 G A BTN2A2 Missense_Mutation p.G416S 0.09 deleterious(0) probably_damaging(1) TCGA-94-8035-01 6 26598564 26598564 C G ABT1 Silent p.R170R 0.21 TCGA-94-8035-01 6 2749478 2749478 G C MYLK4 Missense_Mutation p.N17K 0.16 deleterious_low_confidence(0.05) benign(0.016) TCGA-94-8035-01 6 28269096 28269096 G C PGBD1 Missense_Mutation p.V489L 0.19 deleterious(0) possibly_damaging(0.726) TCGA-94-8035-01 6 33652380 33652380 C T ITPR3 Silent p.N1684N 0.13 TCGA-94-8035-01 6 37443954 37443954 G T CMTR1 Missense_Mutation p.D697Y 0.19 deleterious(0) probably_damaging(0.922) TCGA-94-8035-01 6 51612791 51612791 G T PKHD1 Missense_Mutation p.T3208N 0.21 deleterious(0) probably_damaging(1) TCGA-94-8035-01 6 87967979 87967979 C T ZNF292 Silent p.N1544N 0.17 TCGA-94-8035-01 6 97246401 97246401 G C GPR63 Missense_Mutation p.R403G 0.09 deleterious(0) probably_damaging(0.995) TCGA-94-8035-01 7 100349674 100349674 T G ZAN Missense_Mutation p.I649S 0.20 probably_damaging(0.93) TCGA-94-8035-01 7 107431499 107431499 G T SLC26A3 Silent p.I188I 0.14 TCGA-94-8035-01 7 128494892 128494892 C A FLNC Missense_Mutation p.P2354H 0.23 deleterious(0) probably_damaging(1) TCGA-94-8035-01 7 131853208 131853208 G A PLXNA4 Missense_Mutation p.R1381C 0.06 deleterious(0.01) probably_damaging(1) TCGA-94-8035-01 7 141752582 141752582 A T MGAM Splice_Site p.X987_splice 0.16 TCGA-94-8035-01 7 142139544 142139544 G T TRBV7-6 Silent p.P27P 0.12 TCGA-94-8035-01 7 154587560 154587560 C G DPP6 Missense_Mutation p.H422Q 0.17 deleterious(0) probably_damaging(1) TCGA-94-8035-01 7 20768024 20768024 G C ABCB5 Missense_Mutation p.R938P 0.15 deleterious(0) benign(0.078) TCGA-94-8035-01 7 27168971 27168971 G C HOXA4 Missense_Mutation p.T279S 0.14 deleterious(0) benign(0.298) TCGA-94-8035-01 7 6210549 6210549 T A CYTH3 Missense_Mutation p.N208I 0.19 deleterious(0) probably_damaging(0.994) TCGA-94-8035-01 7 64388183 64388183 C A ZNF273 Missense_Mutation p.H159Q 0.23 tolerated(0.34) possibly_damaging(0.755) TCGA-94-8035-01 7 72419619 72419619 C T POM121 3'UTR 0.08 TCGA-94-8035-01 7 78150916 78150916 T C MAGI2 Silent p.L195L 0.23 TCGA-94-8035-01 7 8258022 8258022 C A ICA1 Silent p.T164T 0.21 TCGA-94-8035-01 7 91631139 91631139 G T AKAP9 Missense_Mutation p.E636D 0.20 probably_damaging(0.998) TCGA-94-8035-01 7 93067382 93067382 G T CALCR Missense_Mutation p.A341E 0.17 deleterious(0) possibly_damaging(0.881) TCGA-94-8035-01 7 99691880 99691880 C G MCM7 Missense_Mutation p.M588I 0.04 tolerated(0.15) benign(0.158) TCGA-94-8035-01 8 103572725 103572725 C G ODF1 Missense_Mutation p.S122R 0.17 tolerated(0.18) benign(0.068) TCGA-94-8035-01 8 120430377 120430377 G C NOV Missense_Mutation p.Q130H 0.25 tolerated(0.11) benign(0.02) TCGA-94-8035-01 8 131848668 131848668 T C ADCY8 Missense_Mutation p.M844V 0.17 deleterious(0.05) benign(0.031) TCGA-94-8035-01 8 139163578 139163578 A G FAM135B Missense_Mutation p.V1047A 0.23 tolerated(0.27) benign(0.133) TCGA-94-8035-01 8 143614714 143614714 G A BAI1 Missense_Mutation p.A1153T 0.25 deleterious(0.02) possibly_damaging(0.787) TCGA-94-8035-01 8 144942571 144942571 G A EPPK1 Silent p.P1617P 0.23 TCGA-94-8035-01 8 24348348 24348348 G T ADAM7 Missense_Mutation p.V435L 0.19 tolerated(0.44) benign(0.022) TCGA-94-8035-01 8 43054694 43054694 G A HGSNAT Silent p.K630K 0.11 TCGA-94-8035-01 8 8176720 8176720 C A SGK223 Silent p.S1055S 0.19 TCGA-94-8035-01 8 8185856 8185856 T A SGK223 Silent p.P812P 0.20 TCGA-94-8035-01 8 82356757 82356757 A T PMP2 Missense_Mutation p.L109Q 0.26 deleterious(0) probably_damaging(0.942) TCGA-94-8035-01 9 114409437 114409437 G A DNAJC25 Silent p.E129E 0.32 TCGA-94-8035-01 9 130289499 130289499 C A FAM129B Missense_Mutation p.G97W 0.40 deleterious(0) probably_damaging(0.999) TCGA-94-8035-01 9 23692777 23692777 G T ELAVL2 Missense_Mutation p.D286E 0.39 tolerated(0.92) benign(0.067) TCGA-94-8035-01 9 38016099 38016099 G A SHB Silent p.P249P 0.31 TCGA-94-8035-01 9 6013779 6013779 G A RANBP6 Missense_Mutation p.S610F 0.10 deleterious(0) probably_damaging(0.996) TCGA-94-8035-01 X 100911668 100911668 C G ARMCX2 Missense_Mutation p.E303Q 0.07 deleterious_low_confidence(0) possibly_damaging(0.71) TCGA-94-8035-01 X 100911681 100911681 C T ARMCX2 Silent p.K298K 0.08 TCGA-94-8035-01 X 100911748 100911748 C G ARMCX2 Missense_Mutation p.G276A 0.11 deleterious_low_confidence(0) possibly_damaging(0.448) TCGA-94-8035-01 X 106845013 106845013 G A FRMPD3 Silent p.E1281E 0.45 TCGA-94-8035-01 X 107422012 107422012 C T COL4A6 Missense_Mutation p.G807E 0.51 probably_damaging(1) TCGA-94-8035-01 X 128599866 128599866 T C SMARCA1 Silent p.A924A 0.44 TCGA-94-8035-01 X 135570477 135570477 C T BRS3 Silent p.L68L 0.07 TCGA-94-8035-01 X 142718694 142718694 A G SLITRK4 Silent p.N77N 0.41 TCGA-94-8035-01 X 149013325 149013325 G - MAGEA8 Frame_Shift_Del p.P95Qfs*25 0.09 TCGA-94-8035-01 X 21627350 21627350 G T CNKSR2 Missense_Mutation p.Q769H 0.42 tolerated(0.07) benign(0.179) TCGA-94-8035-01 X 30327184 30327184 C A NR0B1 Silent p.A99A 0.50 TCGA-94-8035-01 X 44945165 44945165 C A KDM6A Missense_Mutation p.D1163E 0.50 deleterious(0.03) probably_damaging(1) TCGA-94-8035-01 X 53268418 53268418 A G IQSEC2 Missense_Mutation p.F1025S 0.09 deleterious(0) possibly_damaging(0.903) TCGA-94-8035-01 X 75004214 75004214 G T MAGEE2 Missense_Mutation p.L225I 0.49 deleterious(0) benign(0.273) TCGA-94-8490-01 10 101949288 101949288 A - CHUK 3'UTR 0.09 TCGA-94-8490-01 10 102257902 102257902 A G SEC31B Missense_Mutation p.C583R 0.37 deleterious(0) probably_damaging(1) TCGA-94-8490-01 10 105642487 105642487 C G OBFC1 Missense_Mutation p.Q354H 0.11 deleterious(0.02) possibly_damaging(0.823) TCGA-94-8490-01 10 106602611 106602611 T C SORCS3 Missense_Mutation p.L230P 0.35 deleterious(0) possibly_damaging(0.521) TCGA-94-8490-01 10 108389035 108389035 C A SORCS1 Missense_Mutation p.G863C 0.42 deleterious(0) probably_damaging(1) TCGA-94-8490-01 10 115410209 115410209 C A NRAP Missense_Mutation p.E257D 0.31 tolerated(0.1) probably_damaging(0.992) TCGA-94-8490-01 10 11791513 11791513 T C ECHDC3 Silent p.S104S 0.05 TCGA-94-8490-01 10 118354295 118354295 C A PNLIPRP1 Silent p.G128G 0.33 TCGA-94-8490-01 10 118689499 118689499 T G KIAA1598 Missense_Mutation p.E291D 0.37 deleterious(0) benign(0.267) TCGA-94-8490-01 10 121571452 121571452 T C INPP5F Missense_Mutation p.I624T 0.37 deleterious(0.04) benign(0.032) TCGA-94-8490-01 10 13246327 13246327 A C MCM10 Missense_Mutation p.S822R 0.28 deleterious(0.01) benign(0.435) TCGA-94-8490-01 10 134018436 134018436 C T DPYSL4 3'UTR 0.30 TCGA-94-8490-01 10 134648233 134648233 C A TTC40 Missense_Mutation p.R2264M 0.36 deleterious(0.03) possibly_damaging(0.465) TCGA-94-8490-01 10 134906616 134906616 A G GPR123 Intron 0.38 TCGA-94-8490-01 10 135020720 135020720 C T KNDC1 Missense_Mutation p.T1220M 0.36 tolerated(0.08) benign(0.068) TCGA-94-8490-01 10 135038353 135038353 A T KNDC1 Missense_Mutation p.I1737F 0.25 deleterious(0.04) benign(0.442) TCGA-94-8490-01 10 13522980 13522980 A G BEND7 Missense_Mutation p.S276P 0.31 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-94-8490-01 10 15600115 15600115 T C ITGA8 Silent p.V908V 0.32 TCGA-94-8490-01 10 16806502 16806502 T A RSU1 Silent p.P56P 0.24 TCGA-94-8490-01 10 16911661 16911661 C T CUBN Nonsense_Mutation p.W3143* 0.06 TCGA-94-8490-01 10 18254564 18254564 C T SLC39A12 Silent p.Y232Y 0.40 TCGA-94-8490-01 10 27964058 27964058 T C MKX 3'UTR 0.47 TCGA-94-8490-01 10 32635819 32635819 G A EPC1 Missense_Mutation p.R9W 0.41 deleterious(0) probably_damaging(1) TCGA-94-8490-01 10 34625147 34625147 G C PARD3 Missense_Mutation p.T865R 0.35 deleterious(0.02) benign(0.007) TCGA-94-8490-01 10 37508681 37508681 A G ANKRD30A Silent p.K1291K 0.34 TCGA-94-8490-01 10 53227549 53227549 G C PRKG1 Missense_Mutation p.G182A 0.31 deleterious(0) probably_damaging(0.99) TCGA-94-8490-01 10 54529010 54529010 T C MBL2 Missense_Mutation p.K124E 0.37 deleterious(0.03) benign(0.033) TCGA-94-8490-01 10 55566761 55566761 C T PCDH15 Missense_Mutation p.G1542S 0.29 tolerated_low_confidence(0.05) benign(0.083) TCGA-94-8490-01 10 55582552 55582552 A G PCDH15 Missense_Mutation p.L1647P 0.34 tolerated_low_confidence(0.05) benign(0.006) TCGA-94-8490-01 10 56138559 56138559 T G PCDH15 Silent p.R101R 0.36 TCGA-94-8490-01 10 73485263 73485263 C T CDH23 Missense_Mutation p.R1194W 0.33 deleterious(0) probably_damaging(0.989) TCGA-94-8490-01 10 74666367 74666367 T C OIT3 Silent p.C186C 0.38 TCGA-94-8490-01 10 75523327 75523327 T A SEC24C Nonsense_Mutation p.L356* 0.25 TCGA-94-8490-01 10 75884281 75884281 A G AP3M1 Missense_Mutation p.V338A 0.36 tolerated(0.15) benign(0.082) TCGA-94-8490-01 10 86131035 86131035 C A CCSER2 Missense_Mutation p.A76E 0.28 tolerated(1) benign(0.005) TCGA-94-8490-01 10 87407033 87407033 C T GRID1 Missense_Mutation p.E707K 0.38 tolerated(0.19) probably_damaging(0.944) TCGA-94-8490-01 10 88728416 88728416 A T ADIRF Intron 0.35 TCGA-94-8490-01 10 88854156 88854156 C A GLUD1 Missense_Mutation p.R124L 0.36 tolerated(0.12) benign(0.259) TCGA-94-8490-01 10 89692882 89692882 T C PTEN Silent p.I122I 0.07 TCGA-94-8490-01 10 91533789 91533790 - A KIF20B Frame_Shift_Ins p.T1778Nfs*13 0.24 TCGA-94-8490-01 10 93702191 93702191 A T BTAF1 Missense_Mutation p.E89V 0.31 tolerated(0.09) benign(0.031) TCGA-94-8490-01 10 97919392 97919393 - T ZNF518A RNA 0.20 TCGA-94-8490-01 10 97919838 97919838 A T ZNF518A RNA 0.23 TCGA-94-8490-01 10 99410727 99410727 T C PI4K2A Silent p.N125N 0.14 TCGA-94-8490-01 11 101362398 101362398 A T TRPC6 Silent p.T339T 0.30 TCGA-94-8490-01 11 102713455 102713455 A G MMP3 Missense_Mutation p.F100L 0.12 deleterious(0.04) benign(0.081) TCGA-94-8490-01 11 104034552 104034552 T C PDGFD Missense_Mutation p.N35S 0.26 tolerated(1) benign(0) TCGA-94-8490-01 11 108043296 108043296 C A NPAT Silent p.G805G 0.39 TCGA-94-8490-01 11 108190757 108190757 A G ATM Missense_Mutation p.T2142A 0.28 tolerated(0.35) benign(0.02) TCGA-94-8490-01 11 111573995 111573995 A T SIK2 Nonsense_Mutation p.K266* 0.44 TCGA-94-8490-01 11 111626165 111626165 G A PPP2R1B Missense_Mutation p.R233C 0.11 deleterious(0) probably_damaging(1) TCGA-94-8490-01 11 113561000 113561000 G A TMPRSS5 Missense_Mutation p.R387C 0.37 deleterious(0) probably_damaging(0.982) TCGA-94-8490-01 11 114271070 114271070 C A C11orf71 5'UTR 0.36 TCGA-94-8490-01 11 118376178 118376178 G T KMT2A Missense_Mutation p.V3191F 0.09 probably_damaging(0.997) TCGA-94-8490-01 11 118516177 118516177 C T PHLDB1 Silent p.P1075P 0.12 TCGA-94-8490-01 11 119061129 119061129 T C CCDC153 Silent p.R171R 0.06 TCGA-94-8490-01 11 121000464 121000464 G A TECTA Missense_Mutation p.D829N 0.38 tolerated(0.99) benign(0.003) TCGA-94-8490-01 11 121461820 121461820 C A SORL1 Silent p.R1442R 0.07 TCGA-94-8490-01 11 122774676 122774676 C A C11orf63 Missense_Mutation p.P130T 0.35 deleterious(0) probably_damaging(0.995) TCGA-94-8490-01 11 123476094 123476094 G A GRAMD1B Missense_Mutation p.E268K 0.05 deleterious(0.04) benign(0.176) TCGA-94-8490-01 11 123848041 123848041 A G OR10S1 Missense_Mutation p.F120L 0.28 tolerated(0.06) benign(0.027) TCGA-94-8490-01 11 124496861 124496861 G T TBRG1 Missense_Mutation p.S218I 0.35 tolerated(0.05) probably_damaging(0.991) TCGA-94-8490-01 11 125763801 125763801 A G PUS3 Missense_Mutation p.F442S 0.31 tolerated_low_confidence(0.35) benign(0.021) TCGA-94-8490-01 11 126213306 126213306 G T DCPS Missense_Mutation p.Q247H 0.18 deleterious(0.01) benign(0.021) TCGA-94-8490-01 11 131781439 131781439 C A NTM Missense_Mutation p.L22M 0.40 tolerated(0.06) probably_damaging(0.996) TCGA-94-8490-01 11 133712442 133712442 G A SPATA19 Silent p.F125F 0.41 TCGA-94-8490-01 11 14539511 14539511 A T PSMA1 Missense_Mutation p.I28N 0.47 deleterious(0) probably_damaging(0.95) TCGA-94-8490-01 11 17741783 17741783 A G MYOD1 Missense_Mutation p.N152D 0.60 deleterious(0.02) benign(0.207) TCGA-94-8490-01 11 212439 212439 A G RIC8A Silent p.V331V 0.53 TCGA-94-8490-01 11 2154302 2154302 T A IGF2 Missense_Mutation p.K209I 0.57 tolerated(0.15) possibly_damaging(0.642) TCGA-94-8490-01 11 2436401 2436401 C A TRPM5 Missense_Mutation p.A477S 0.74 tolerated(0.19) possibly_damaging(0.725) TCGA-94-8490-01 11 28080620 28080620 A G KIF18A Missense_Mutation p.F601L 0.13 tolerated(0.08) benign(0.248) TCGA-94-8490-01 11 32610226 32610226 G A EIF3M Missense_Mutation p.E88K 0.61 tolerated(0.07) benign(0.024) TCGA-94-8490-01 11 3681093 3681093 G C ART1 Missense_Mutation p.G115A 0.54 tolerated(0.88) benign(0.009) TCGA-94-8490-01 11 3681302 3681302 C A ART1 Missense_Mutation p.R185S 0.59 deleterious(0.02) possibly_damaging(0.61) TCGA-94-8490-01 11 40136748 40136748 G T LRRC4C Silent p.V365V 0.61 TCGA-94-8490-01 11 43380493 43380494 - G TTC17 5'UTR 0.58 TCGA-94-8490-01 11 45671225 45671225 C G CHST1 3'UTR 0.68 TCGA-94-8490-01 11 47259421 47259421 G A DDB2 Missense_Mutation p.V353M 0.17 deleterious(0.01) probably_damaging(0.977) TCGA-94-8490-01 11 50003128 50003129 - T OR4C12 Frame_Shift_Ins p.V304Sfs*5 0.37 TCGA-94-8490-01 11 5264364 5264364 T A HBG1 3'Flank 0.45 TCGA-94-8490-01 11 5274467 5274467 A G HBG2 3'UTR 0.24 TCGA-94-8490-01 11 55541582 55541582 T C OR5D13 Silent p.I223I 0.35 TCGA-94-8490-01 11 55563473 55563473 G T OR5D14 Missense_Mutation p.A148S 0.40 tolerated(0.37) benign(0.126) TCGA-94-8490-01 11 55595502 55595502 G A OR5L2 Missense_Mutation p.V270I 0.13 tolerated(0.21) benign(0.002) TCGA-94-8490-01 11 55735654 55735655 - A OR10AG1 Frame_Shift_Ins p.L96Sfs*17 0.37 TCGA-94-8490-01 11 55761808 55761808 G C OR5F1 Missense_Mutation p.F98L 0.07 tolerated(0.83) benign(0.177) TCGA-94-8490-01 11 55904323 55904323 C A OR8J3 Missense_Mutation p.S291I 0.36 deleterious(0) possibly_damaging(0.835) TCGA-94-8490-01 11 56020461 56020461 G A OR5T3 Silent p.K262K 0.32 TCGA-94-8490-01 11 56230465 56230465 A C OR5M9 Missense_Mutation p.V138G 0.41 deleterious(0) probably_damaging(0.934) TCGA-94-8490-01 11 5624837 5624837 G C TRIM6 Missense_Mutation p.D127H 0.60 tolerated(1) benign(0) TCGA-94-8490-01 11 56432078 56432079 - A OR5AR1 Frame_Shift_Ins p.S309Ifs*14 0.12 TCGA-94-8490-01 11 56511036 56511037 - A OR9G4 Frame_Shift_Ins p.L84Ffs*22 0.28 TCGA-94-8490-01 11 57947540 57947540 T A OR9Q1 Silent p.P208P 0.36 TCGA-94-8490-01 11 58920108 58920108 G - FAM111A Frame_Shift_Del p.E324Kfs*14 0.25 TCGA-94-8490-01 11 59211407 59211407 G T OR5A1 Missense_Mutation p.G256W 0.35 deleterious(0) probably_damaging(1) TCGA-94-8490-01 11 59361091 59361091 G C OSBP Missense_Mutation p.S555C 0.04 deleterious(0) probably_damaging(0.998) TCGA-94-8490-01 11 59611352 59611352 C A GIF Missense_Mutation p.D86Y 0.10 deleterious(0) probably_damaging(0.97) TCGA-94-8490-01 11 61205237 61205237 T C SDHAF2 Silent p.T59T 0.37 TCGA-94-8490-01 11 62295770 62295770 T C AHNAK Missense_Mutation p.H2040R 0.08 benign(0.011) TCGA-94-8490-01 11 62752171 62752171 G C SLC22A6 5'UTR 0.20 TCGA-94-8490-01 11 63426595 63426595 T G ATL3 Missense_Mutation p.D59A 0.37 tolerated(0.36) possibly_damaging(0.848) TCGA-94-8490-01 11 64572245 64572245 G A MEN1 Missense_Mutation p.A470V 0.38 tolerated(0.28) benign(0.383) TCGA-94-8490-01 11 64595039 64595039 G A CDC42BPG Silent p.T1370T 0.46 TCGA-94-8490-01 11 65266692 65266692 G A MALAT1 RNA 0.38 TCGA-94-8490-01 11 66610673 66610673 T C C11orf80 Missense_Mutation p.S668P 0.29 deleterious(0.02) possibly_damaging(0.82) TCGA-94-8490-01 11 6897969 6897969 C A OR10A4 Missense_Mutation p.L31I 0.60 tolerated(0.54) benign(0.005) TCGA-94-8490-01 11 70007401 70007401 C G ANO1 Missense_Mutation p.I571M 0.38 deleterious(0) probably_damaging(0.992) TCGA-94-8490-01 11 7060033 7060033 G C NLRP14 Missense_Mutation p.W72C 0.71 deleterious(0) probably_damaging(0.988) TCGA-94-8490-01 11 71277322 71277322 G C KRTAP5-10 3'UTR 0.40 TCGA-94-8490-01 11 71939171 71939171 G T INPPL1 Intron 0.11 TCGA-94-8490-01 11 73689355 73689355 A G UCP2 Silent p.A23A 0.39 TCGA-94-8490-01 11 74880756 74880756 G A SLCO2B1 Missense_Mutation p.G243E 0.34 deleterious(0.02) probably_damaging(1) TCGA-94-8490-01 11 75154253 75154253 C A GDPD5 Silent p.L292L 0.11 TCGA-94-8490-01 11 75440016 75440016 C A MOGAT2 Silent p.R278R 0.09 TCGA-94-8490-01 11 77825422 77825422 C A ALG8 Missense_Mutation p.G188V 0.28 deleterious(0.01) possibly_damaging(0.853) TCGA-94-8490-01 11 82924234 82924235 - A ANKRD42 Intron 0.33 TCGA-94-8490-01 11 82935920 82935920 C A ANKRD42 Missense_Mutation p.H176N 0.30 tolerated(0.06) probably_damaging(0.999) TCGA-94-8490-01 11 88300894 88300894 G A GRM5 Missense_Mutation p.L653F 0.36 tolerated(0.07) probably_damaging(1) TCGA-94-8490-01 11 89892473 89892473 C A NAALAD2 Silent p.I319I 0.31 TCGA-94-8490-01 11 89911171 89911171 A G NAALAD2 Missense_Mutation p.I582V 0.34 tolerated(0.89) benign(0) TCGA-94-8490-01 11 9080917 9080917 G A SCUBE2 Silent p.I341I 0.69 TCGA-94-8490-01 12 100601493 100601493 C A ACTR6 Missense_Mutation p.T103N 0.19 tolerated(0.43) benign(0.009) TCGA-94-8490-01 12 103352685 103352685 G T ASCL1 Silent p.P221P 0.36 TCGA-94-8490-01 12 104187768 104187768 A T NT5DC3 Missense_Mutation p.I254N 0.07 deleterious(0) probably_damaging(0.987) TCGA-94-8490-01 12 106460969 106460969 C T NUAK1 Missense_Mutation p.A533T 0.35 tolerated(0.64) benign(0) TCGA-94-8490-01 12 106461307 106461307 A G NUAK1 Missense_Mutation p.V420A 0.05 tolerated(0.58) benign(0.002) TCGA-94-8490-01 12 106848355 106848355 T C POLR3B Missense_Mutation p.V720A 0.40 deleterious(0.04) possibly_damaging(0.708) TCGA-94-8490-01 12 107393547 107393547 C G CRY1 Missense_Mutation p.D307H 0.07 deleterious(0.02) probably_damaging(1) TCGA-94-8490-01 12 109016954 109016954 G C SELPLG Missense_Mutation p.S393C 0.42 deleterious(0.01) probably_damaging(0.925) TCGA-94-8490-01 12 109286773 109286773 A G DAO Silent p.G156G 0.13 TCGA-94-8490-01 12 10999792 10999792 T A PRR4 Missense_Mutation p.Q92L 0.36 deleterious_low_confidence(0.02) benign(0.145) TCGA-94-8490-01 12 11139379 11139379 T C TAS2R50 Missense_Mutation p.I27M 0.26 deleterious(0) probably_damaging(0.96) TCGA-94-8490-01 12 11139381 11139381 T A TAS2R50 Missense_Mutation p.I27L 0.26 deleterious(0.01) possibly_damaging(0.558) TCGA-94-8490-01 12 111885577 111885577 G A SH2B3 Missense_Mutation p.A452T 0.33 tolerated(0.17) possibly_damaging(0.791) TCGA-94-8490-01 12 112451211 112451211 C G ERP29 5'UTR 0.39 TCGA-94-8490-01 12 112846070 112846070 T C RPL6 Missense_Mutation p.T104A 0.38 tolerated(0.07) benign(0.019) TCGA-94-8490-01 12 113645816 113645816 G A IQCD Silent p.I52I 0.40 TCGA-94-8490-01 12 116445316 116445316 T C MED13L Missense_Mutation p.N713S 0.39 tolerated(1) unknown(0) TCGA-94-8490-01 12 117715886 117715886 G T NOS1 Silent p.G514G 0.07 TCGA-94-8490-01 12 118506404 118506404 T C VSIG10 Splice_Site p.X449_splice 0.22 TCGA-94-8490-01 12 119591378 119591378 T A SRRM4 Missense_Mutation p.S439T 0.65 deleterious_low_confidence(0.01) possibly_damaging(0.682) TCGA-94-8490-01 12 121613201 121613201 T C P2RX7 Missense_Mutation p.Y298H 0.35 deleterious(0.04) possibly_damaging(0.791) TCGA-94-8490-01 12 122619842 122619842 T C MLXIP Missense_Mutation p.S602P 0.10 tolerated(0.42) benign(0.025) TCGA-94-8490-01 12 123089921 123089921 T C KNTC1 Silent p.L1819L 0.28 TCGA-94-8490-01 12 124297807 124297807 T C DNAH10 Missense_Mutation p.S963P 0.13 possibly_damaging(0.519) TCGA-94-8490-01 12 130015699 130015699 A G TMEM132D Silent p.P340P 0.11 TCGA-94-8490-01 12 132624678 132624678 G A DDX51 Silent p.Y580Y 0.37 TCGA-94-8490-01 12 133327329 133327329 A G ANKLE2 Silent p.F249F 0.39 TCGA-94-8490-01 12 18849171 18849171 A G PLCZ1 Missense_Mutation p.F402L 0.28 tolerated(0.2) probably_damaging(0.967) TCGA-94-8490-01 12 19593124 19593124 C T AEBP2 Missense_Mutation p.P164L 0.31 deleterious_low_confidence(0) unknown(0) TCGA-94-8490-01 12 2062297 2062297 A G DCP1B Missense_Mutation p.V270A 0.41 tolerated(0.12) benign(0.021) TCGA-94-8490-01 12 20886037 20886037 G T SLCO1C1 Nonsense_Mutation p.G461* 0.05 TCGA-94-8490-01 12 21644542 21644542 A G RECQL Missense_Mutation p.L42P 0.33 deleterious(0) probably_damaging(0.945) TCGA-94-8490-01 12 21721878 21721878 G A GYS2 Silent p.S248S 0.36 TCGA-94-8490-01 12 23687405 23687405 G A SOX5 Silent p.A680A 0.41 TCGA-94-8490-01 12 24102556 24102556 C T SOX5 5'UTR 0.35 TCGA-94-8490-01 12 25672874 25672874 T A IFLTD1 Missense_Mutation p.T312S 0.31 tolerated(0.48) benign(0.069) TCGA-94-8490-01 12 26277870 26277871 - C BHLHE41 5'UTR 0.31 TCGA-94-8490-01 12 26648162 26648162 C T ITPR2 Missense_Mutation p.R1702Q 0.32 tolerated(0.09) benign(0.005) TCGA-94-8490-01 12 2702417 2702417 C A CACNA1C Missense_Mutation p.P857T 0.33 deleterious(0.03) probably_damaging(0.927) TCGA-94-8490-01 12 27950821 27950821 G A KLHL42 Missense_Mutation p.D414N 0.35 deleterious(0) probably_damaging(0.937) TCGA-94-8490-01 12 29640739 29640739 G C OVCH1 Missense_Mutation p.A260G 0.28 deleterious(0) benign(0.26) TCGA-94-8490-01 12 32138134 32138134 C T KIAA1551 Silent p.N1415N 0.08 TCGA-94-8490-01 12 33560269 33560269 G T SYT10 Missense_Mutation p.L178M 0.41 tolerated(0.06) probably_damaging(0.997) TCGA-94-8490-01 12 34179975 34179976 - T ALG10 3'UTR 0.27 TCGA-94-8490-01 12 40748285 40748285 C T LRRK2 Missense_Mutation p.S2254F 0.11 tolerated(0.71) benign(0.005) TCGA-94-8490-01 12 42706970 42706971 - T ZCRB1 Frame_Shift_Ins p.W185Mfs*13 0.29 TCGA-94-8490-01 12 44132174 44132174 A G PUS7L Silent p.F461F 0.38 TCGA-94-8490-01 12 44177520 44177520 A C IRAK4 Missense_Mutation p.Q394P 0.12 tolerated(0.05) benign(0.095) TCGA-94-8490-01 12 4554429 4554429 T C FGF6 Missense_Mutation p.D103G 0.34 deleterious(0.03) benign(0.232) TCGA-94-8490-01 12 49075270 49075270 T C KANSL2 Missense_Mutation p.H49R 0.36 deleterious(0) probably_damaging(0.978) TCGA-94-8490-01 12 49425995 49425995 G A KMT2D Nonsense_Mutation p.Q4165* 0.44 TCGA-94-8490-01 12 49445126 49445126 G A KMT2D Silent p.C780C 0.39 TCGA-94-8490-01 12 49854819 49854819 G T SPATS2 Missense_Mutation p.K8N 0.32 deleterious(0.02) benign(0.004) TCGA-94-8490-01 12 50570680 50570681 - T LIMA1 3'UTR 0.32 TCGA-94-8490-01 12 52387927 52387927 G T ACVR1B 3'UTR 0.37 TCGA-94-8490-01 12 52909609 52909609 C A KRT5 Nonsense_Mutation p.G483* 0.33 TCGA-94-8490-01 12 53687211 53687212 - T ESPL1 Frame_Shift_Ins p.G2107Wfs*46 0.28 TCGA-94-8490-01 12 56115497 56115497 C T RDH5 Missense_Mutation p.A112V 0.27 deleterious(0) probably_damaging(0.998) TCGA-94-8490-01 12 56385953 56385953 A T RAB5B Missense_Mutation p.H202L 0.35 tolerated(0.2) benign(0.011) TCGA-94-8490-01 12 56708990 56708990 C A CNPY2 Missense_Mutation p.W4C 0.14 deleterious(0.02) unknown(0) TCGA-94-8490-01 12 57140614 57140614 G T PRIM1 Nonsense_Mutation p.C131* 0.12 TCGA-94-8490-01 12 57873048 57873049 - A ARHGAP9 Frame_Shift_Ins p.G48Wfs*3 0.28 TCGA-94-8490-01 12 57963874 57963874 C T KIF5A Missense_Mutation p.R408C 0.36 tolerated(0.06) possibly_damaging(0.623) TCGA-94-8490-01 12 58200289 58200289 C G AVIL Missense_Mutation p.D509H 0.34 tolerated(0.09) possibly_damaging(0.498) TCGA-94-8490-01 12 58217685 58217685 A G CTDSP2 Splice_Site p.X230_splice 0.31 TCGA-94-8490-01 12 6619866 6619866 G A NCAPD2 Missense_Mutation p.A112T 0.11 tolerated(0.41) benign(0.037) TCGA-94-8490-01 12 66717841 66717841 A T HELB Silent p.L792L 0.08 TCGA-94-8490-01 12 66717849 66717849 A C HELB Missense_Mutation p.N795T 0.07 tolerated(0.08) benign(0.055) TCGA-94-8490-01 12 68708794 68708794 G A MDM1 Missense_Mutation p.A478V 0.11 tolerated(0.66) benign(0.001) TCGA-94-8490-01 12 69233333 69233334 TA - MDM2 Frame_Shift_Del p.Y400Ffs*7 0.09 TCGA-94-8490-01 12 7080158 7080158 T G EMG1 Silent p.A24A 0.18 TCGA-94-8490-01 12 7080195 7080195 A G EMG1 Missense_Mutation p.K37E 0.18 tolerated(0.44) TCGA-94-8490-01 12 73014983 73014983 T C TRHDE Silent p.H810H 0.33 TCGA-94-8490-01 12 7355228 7355228 T C PEX5 Silent p.V273V 0.35 TCGA-94-8490-01 12 75601189 75601189 A G KCNC2 Missense_Mutation p.I192T 0.27 tolerated(0.26) benign(0.101) TCGA-94-8490-01 12 7981318 7981319 - T SLC2A14 Frame_Shift_Ins p.E243Rfs*27 0.08 TCGA-94-8490-01 12 80014866 80014866 T A PAWR Missense_Mutation p.Y213F 0.36 tolerated(0.12) benign(0.007) TCGA-94-8490-01 12 80747192 80747192 A G OTOGL Missense_Mutation p.H1823R 0.30 tolerated(0.15) benign(0.193) TCGA-94-8490-01 12 81111312 81111312 C - MYF5 Frame_Shift_Del p.S158Afs*53 0.24 TCGA-94-8490-01 12 8248242 8248242 C T NECAP1 Missense_Mutation p.A241V 0.32 tolerated(0.2) benign(0.002) TCGA-94-8490-01 12 82872803 82872803 A G METTL25 Nonstop_Mutation p.*604Wext*13 0.11 TCGA-94-8490-01 12 85515477 85515477 A G LRRIQ1 Missense_Mutation p.D1127G 0.44 tolerated(0.57) benign(0.021) TCGA-94-8490-01 12 9268538 9268538 G A A2M 5'UTR 0.39 TCGA-94-8490-01 12 96360234 96360234 G A AMDHD1 Missense_Mutation p.G381R 0.36 deleterious(0) probably_damaging(1) TCGA-94-8490-01 12 995033 995033 T C WNK1 Missense_Mutation p.V1688A 0.36 tolerated(0.13) benign(0.109) TCGA-94-8490-01 13 108882243 108882243 C G ABHD13 Missense_Mutation p.A226G 0.28 tolerated(0.06) possibly_damaging(0.593) TCGA-94-8490-01 13 114503847 114503847 C T TMEM255B Silent p.S157S 0.26 TCGA-94-8490-01 13 26788625 26788625 C T RNF6 Missense_Mutation p.R465H 0.56 tolerated(0.29) possibly_damaging(0.835) TCGA-94-8490-01 13 28498470 28498470 G T PDX1 Nonsense_Mutation p.E162* 0.70 TCGA-94-8490-01 13 32527463 32527463 A G EEF1DP3 RNA 0.12 TCGA-94-8490-01 13 43934080 43934080 C T ENOX1 Missense_Mutation p.G166S 0.60 deleterious(0.01) probably_damaging(0.984) TCGA-94-8490-01 13 60407340 60407340 C T DIAPH3 Silent p.K976K 0.65 TCGA-94-8490-01 13 70681642 70681642 C T KLHL1 Missense_Mutation p.G64S 0.51 tolerated_low_confidence(0.14) benign(0.002) TCGA-94-8490-01 13 73468047 73468047 A G PIBF1 Missense_Mutation p.Q483R 0.36 tolerated(0.23) benign(0.079) TCGA-94-8490-01 13 78130794 78130794 G T SCEL Missense_Mutation p.R36I 0.05 deleterious(0) probably_damaging(0.985) TCGA-94-8490-01 13 78192176 78192176 G T SCEL Missense_Mutation p.A537S 0.34 tolerated(0.1) benign(0.281) TCGA-94-8490-01 14 100847605 100847605 C T WDR25 Missense_Mutation p.S115F 0.09 tolerated(0.24) benign(0.282) TCGA-94-8490-01 14 101004886 101004886 C A BEGAIN Missense_Mutation p.R401L 0.41 tolerated(0.14) possibly_damaging(0.504) TCGA-94-8490-01 14 103434996 103434996 T C CDC42BPB Missense_Mutation p.K685E 0.05 deleterious(0.03) benign(0.184) TCGA-94-8490-01 14 104001123 104001123 G A TRMT61A Missense_Mutation p.G279S 0.14 tolerated(0.08) probably_damaging(0.959) TCGA-94-8490-01 14 105054157 105054157 G T C14orf180 Missense_Mutation p.K61N 0.38 deleterious(0) benign(0.005) TCGA-94-8490-01 14 105715623 105715623 C - BRF1 Intron 0.40 TCGA-94-8490-01 14 105931117 105931117 G A MTA1 Missense_Mutation p.R484H 0.11 tolerated(0.11) probably_damaging(0.987) TCGA-94-8490-01 14 106471445 106471445 T C IGHV1-3 Missense_Mutation p.Y51C 0.39 deleterious(0.01) benign(0.048) TCGA-94-8490-01 14 20443742 20443743 - A OR4K15 Frame_Shift_Ins p.S24Ifs*4 0.11 TCGA-94-8490-01 14 22951316 22951316 C G TRAJ54 Silent p.T14T 0.33 TCGA-94-8490-01 14 23870172 23870172 C A MYH6 Missense_Mutation p.A386S 0.41 tolerated(0.07) benign(0.326) TCGA-94-8490-01 14 23891500 23891500 C T MYH7 Missense_Mutation p.R1045H 0.35 deleterious(0) benign(0.203) TCGA-94-8490-01 14 24534240 24534240 C T LRRC16B Missense_Mutation p.R1052C 0.34 deleterious(0) possibly_damaging(0.876) TCGA-94-8490-01 14 24572425 24572425 G A PCK2 Missense_Mutation p.A477T 0.34 tolerated(0.8) benign(0.336) TCGA-94-8490-01 14 24785671 24785671 G A LTB4R Missense_Mutation p.A272T 0.62 tolerated(0.1) possibly_damaging(0.504) TCGA-94-8490-01 14 24839681 24839681 G T NFATC4 Missense_Mutation p.E422D 0.39 tolerated(0.39) benign(0.108) TCGA-94-8490-01 14 29237400 29237400 C T FOXG1 Silent p.S305S 0.37 TCGA-94-8490-01 14 30066721 30066721 G T PRKD1 Missense_Mutation p.P804T 0.35 deleterious(0.05) possibly_damaging(0.838) TCGA-94-8490-01 14 31382844 31382844 T A STRN3 Silent p.P420P 0.37 TCGA-94-8490-01 14 31581672 31581672 T A HECTD1 Silent p.P2076P 0.39 TCGA-94-8490-01 14 35596746 35596746 G A KIAA0391 Missense_Mutation p.E366K 0.40 tolerated(0.35) probably_damaging(0.953) TCGA-94-8490-01 14 38278035 38278036 - A TTC6 Frame_Shift_Ins p.R1519Kfs*17 0.21 TCGA-94-8490-01 14 38724332 38724332 G A CLEC14A Missense_Mutation p.T299I 0.42 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-94-8490-01 14 39868655 39868656 - A FBXO33 3'UTR 0.70 TCGA-94-8490-01 14 39870888 39870889 AA - FBXO33 Frame_Shift_Del p.L296Hfs*5 0.29 TCGA-94-8490-01 14 44975803 44975803 T C FSCB Missense_Mutation p.R130G 0.37 deleterious(0.03) possibly_damaging(0.849) TCGA-94-8490-01 14 45433158 45433158 T C FAM179B Missense_Mutation p.S512P 0.37 deleterious(0.01) possibly_damaging(0.642) TCGA-94-8490-01 14 45650715 45650715 A T FANCM Missense_Mutation p.L1435F 0.32 deleterious(0.01) probably_damaging(0.992) TCGA-94-8490-01 14 45669209 45669209 T C FANCM Nonstop_Mutation p.*2049Qext*20 0.37 TCGA-94-8490-01 14 51467532 51467532 T A TRIM9 Missense_Mutation p.I445F 0.09 tolerated(0.12) benign(0.027) TCGA-94-8490-01 14 52509591 52509591 G A NID2 Silent p.S496S 0.38 TCGA-94-8490-01 14 58038655 58038655 A T SLC35F4 Missense_Mutation p.V333E 0.45 deleterious(0) probably_damaging(0.999) TCGA-94-8490-01 14 64463861 64463861 G A SYNE2 Missense_Mutation p.G1046D 0.33 benign(0.333) TCGA-94-8490-01 14 65260131 65260131 G A SPTB Silent p.G750G 0.39 TCGA-94-8490-01 14 65569146 65569146 G T MAX 5'UTR 0.52 TCGA-94-8490-01 14 67525630 67525631 - T GPHN Intron 0.25 TCGA-94-8490-01 14 69521707 69521707 T C DCAF5 Missense_Mutation p.S566G 0.07 deleterious_low_confidence(0) benign(0.037) TCGA-94-8490-01 14 74507287 74507288 AC - CCDC176 Frame_Shift_Del p.T173Rfs*9 0.19 TCGA-94-8490-01 14 76123877 76123877 C A C14orf1 Splice_Site 0.37 TCGA-94-8490-01 14 81251554 81251554 C TT CEP128 Frame_Shift_Ins p.M633Nfs*17 0.19 TCGA-94-8490-01 14 81668001 81668001 G A GTF2A1 Silent p.A113A 0.36 TCGA-94-8490-01 14 88477474 88477474 T C GPR65 Missense_Mutation p.Y95H 0.05 deleterious(0.03) possibly_damaging(0.492) TCGA-94-8490-01 14 88904321 88904322 - A SPATA7 Frame_Shift_Ins p.N454Kfs*2 0.31 TCGA-94-8490-01 14 89082538 89082538 G T EML5 Silent p.R1949R 0.35 TCGA-94-8490-01 14 89307781 89307781 A G TTC8 Missense_Mutation p.T168A 0.45 tolerated(0.38) benign(0.354) TCGA-94-8490-01 14 91366535 91366535 C A RPS6KA5 Silent p.L432L 0.31 TCGA-94-8490-01 14 91952049 91952049 G A SMEK1 Missense_Mutation p.A75V 0.33 deleterious(0) benign(0.215) TCGA-94-8490-01 14 92403309 92403309 C A FBLN5 Nonsense_Mutation p.E121* 0.35 TCGA-94-8490-01 14 92436051 92436051 G T TRIP11 Missense_Mutation p.A1969D 0.37 deleterious(0) probably_damaging(0.999) TCGA-94-8490-01 14 93653028 93653029 - T TMEM251 3'UTR 0.27 TCGA-94-8490-01 14 93709239 93709240 - T BTBD7 Frame_Shift_Ins p.H927Tfs*21 0.18 TCGA-94-8490-01 14 94071256 94071256 A T UNC79 Intron 0.23 TCGA-94-8490-01 14 94089091 94089091 A G UNC79 Missense_Mutation p.R1661G 0.31 deleterious_low_confidence(0) possibly_damaging(0.477) TCGA-94-8490-01 14 94107530 94107530 T A UNC79 Missense_Mutation p.V1809D 0.40 deleterious_low_confidence(0) possibly_damaging(0.602) TCGA-94-8490-01 14 94712717 94712717 T C PPP4R4 Silent p.I484I 0.16 TCGA-94-8490-01 14 94756793 94756793 C A SERPINA10 Missense_Mutation p.K46N 0.57 tolerated(0.49) benign(0.005) TCGA-94-8490-01 14 95582075 95582075 T C DICER1 Silent p.P612P 0.40 TCGA-94-8490-01 14 95670201 95670202 - A CLMN Frame_Shift_Ins p.L495Ffs*8 0.35 TCGA-94-8490-01 14 99973445 99973445 A T CCNK Missense_Mutation p.T360S 0.35 tolerated(0.28) unknown(0) TCGA-94-8490-01 15 101448629 101448629 G A ALDH1A3 Missense_Mutation p.A470T 0.37 tolerated(0.11) benign(0.238) TCGA-94-8490-01 15 101608908 101608908 A G LRRK1 Missense_Mutation p.D1968G 0.32 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-94-8490-01 15 102255131 102255131 A G TARSL2 Missense_Mutation p.V201A 0.39 deleterious(0) benign(0.25) TCGA-94-8490-01 15 20496671 20496671 T G CHEK2P2 RNA 0.12 TCGA-94-8490-01 15 23889021 23889021 G A MAGEL2 3'UTR 0.36 TCGA-94-8490-01 15 23931713 23931713 C T NDN Missense_Mutation p.G218R 0.12 tolerated(0.48) probably_damaging(1) TCGA-94-8490-01 15 23932421 23932421 G T NDN 5'UTR 0.31 TCGA-94-8490-01 15 24921531 24921531 G A NPAP1 Missense_Mutation p.D173N 0.32 tolerated(0.27) benign(0.259) TCGA-94-8490-01 15 25223621 25223621 T C SNRPN 3'UTR 0.38 TCGA-94-8490-01 15 25342872 25342872 C T SNORD116-25 RNA 0.36 TCGA-94-8490-01 15 25417668 25417668 C A SNORD115-3 5'Flank 0.37 TCGA-94-8490-01 15 25446325 25446326 - G SNORD115-19 5'Flank 0.24 TCGA-94-8490-01 15 25453174 25453174 G A SNORD115-22 5'Flank 0.38 TCGA-94-8490-01 15 25453284 25453284 A G SNORD115-21 RNA 0.07 TCGA-94-8490-01 15 25472289 25472289 G T SNORD115-31 RNA 0.34 TCGA-94-8490-01 15 28412854 28412854 T C HERC2 Silent p.E3511E 0.39 TCGA-94-8490-01 15 28506054 28506054 C T HERC2 Missense_Mutation p.E729K 0.32 benign(0.145) TCGA-94-8490-01 15 34038341 34038341 A C RYR3 Missense_Mutation p.K2658Q 0.33 possibly_damaging(0.899) TCGA-94-8490-01 15 40662481 40662481 C T DISP2 Missense_Mutation p.R1390C 0.37 deleterious(0) probably_damaging(0.988) TCGA-94-8490-01 15 40849530 40849530 T C C15orf57 Missense_Mutation p.T105A 0.47 deleterious(0) probably_damaging(0.984) TCGA-94-8490-01 15 40913143 40913143 T C CASC5 Silent p.C253C 0.15 TCGA-94-8490-01 15 41796161 41796161 G A LTK 3'UTR 0.40 TCGA-94-8490-01 15 42052717 42052717 T A MGA Missense_Mutation p.I2463N 0.38 deleterious(0) probably_damaging(0.998) TCGA-94-8490-01 15 42523404 42523404 C A TMEM87A Missense_Mutation p.A373S 0.32 tolerated(0.45) benign(0.084) TCGA-94-8490-01 15 43270111 43270111 T C UBR1 Silent p.P1395P 0.33 TCGA-94-8490-01 15 43501582 43501582 A G EPB42 Missense_Mutation p.L271S 0.38 tolerated(0.46) benign(0.098) TCGA-94-8490-01 15 43678018 43678018 A G TUBGCP4 Silent p.A251A 0.33 TCGA-94-8490-01 15 48805799 48805799 G A FBN1 Missense_Mutation p.T512I 0.09 benign(0.001) TCGA-94-8490-01 15 49284400 49284401 - C SECISBP2L 3'UTR 0.26 TCGA-94-8490-01 15 50581723 50581723 T C GABPB1 Silent p.G292G 0.06 TCGA-94-8490-01 15 52879376 52879376 C A FAM214A Missense_Mutation p.R950L 0.37 deleterious(0) possibly_damaging(0.702) TCGA-94-8490-01 15 62173978 62173978 A G VPS13C Missense_Mutation p.V3225A 0.10 deleterious(0) probably_damaging(0.998) TCGA-94-8490-01 15 62978940 62978940 A G TLN2 Missense_Mutation p.E353G 0.27 deleterious(0.01) benign(0.18) TCGA-94-8490-01 15 63951979 63951979 A G HERC1 Missense_Mutation p.M3127T 0.13 probably_damaging(0.943) TCGA-94-8490-01 15 66044829 66044829 T C DENND4A Missense_Mutation p.N150S 0.34 tolerated(0.87) benign(0.001) TCGA-94-8490-01 15 75562437 75562437 A G GOLGA6C Missense_Mutation p.N660S 0.12 tolerated(0.23) benign(0.079) TCGA-94-8490-01 15 76019665 76019665 G A ODF3L1 Silent p.T203T 0.31 TCGA-94-8490-01 15 76566824 76566824 G C ETFA Missense_Mutation p.R249G 0.37 deleterious(0) probably_damaging(0.975) TCGA-94-8490-01 15 77906796 77906796 G A LINGO1 Missense_Mutation p.R485C 0.07 deleterious(0) probably_damaging(0.983) TCGA-94-8490-01 15 81199023 81199023 C T KIAA1199 Silent p.H477H 0.34 TCGA-94-8490-01 15 82444521 82444521 A G EFTUD1 Silent p.L758L 0.13 TCGA-94-8490-01 15 86312711 86312711 C T KLHL25 Missense_Mutation p.A111T 0.05 tolerated(0.58) benign(0.003) TCGA-94-8490-01 15 96877613 96877613 G A NR2F2 Missense_Mutation p.E251K 0.36 deleterious(0) probably_damaging(0.993) TCGA-94-8490-01 16 20648130 20648130 A G ACSM1 Silent p.P410P 0.06 TCGA-94-8490-01 16 20791891 20791891 C A ACSM3 Intron 0.27 TCGA-94-8490-01 16 20792405 20792405 G A ACSM3 Missense_Mutation p.V298I 0.06 tolerated(0.35) benign(0.262) TCGA-94-8490-01 16 21151862 21151862 G T DNAH3 Missense_Mutation p.L231M 0.37 tolerated(0.19) benign(0.059) TCGA-94-8490-01 16 2226350 2226350 C A TRAF7 Silent p.R655R 0.25 TCGA-94-8490-01 16 23647085 23647085 T C PALB2 Missense_Mutation p.H261R 0.40 tolerated(0.22) benign(0.011) TCGA-94-8490-01 16 24226282 24226282 G A PRKCB 3'UTR 0.22 TCGA-94-8490-01 16 25258695 25258695 T C ZKSCAN2 Silent p.T274T 0.31 TCGA-94-8490-01 16 2812395 2812395 G C SRRM2 Missense_Mutation p.R622S 0.36 unknown(0) TCGA-94-8490-01 16 28507861 28507861 G T APOBR Missense_Mutation p.S500I 0.29 deleterious(0.02) possibly_damaging(0.607) TCGA-94-8490-01 16 29912831 29912831 G A ASPHD1 Missense_Mutation p.G180E 0.10 tolerated(0.3) benign(0.001) TCGA-94-8490-01 16 30102104 30102104 C A TBX6 Nonsense_Mutation p.E110* 0.06 TCGA-94-8490-01 16 30128541 30128541 G T MAPK3 Missense_Mutation p.L281I 0.38 tolerated(1) benign(0.092) TCGA-94-8490-01 16 30389228 30389228 C T MYLPF 3'UTR 0.38 TCGA-94-8490-01 16 30391317 30391317 T A SEPT1 Missense_Mutation p.Y204F 0.39 probably_damaging(0.992) TCGA-94-8490-01 16 30507829 30507829 G A ITGAL Missense_Mutation p.E592K 0.38 tolerated(0.1) benign(0.011) TCGA-94-8490-01 16 30543883 30543883 G A ZNF747 3'UTR 0.42 TCGA-94-8490-01 16 30749566 30749566 T G SRCAP Silent p.T2735T 0.40 TCGA-94-8490-01 16 30958474 30958474 T C FBXL19 Missense_Mutation p.C670R 0.07 deleterious(0) possibly_damaging(0.761) TCGA-94-8490-01 16 30991083 30991083 G A SETD1A Missense_Mutation p.A1326T 0.36 unknown(0) TCGA-94-8490-01 16 31004512 31004512 T C STX1B Missense_Mutation p.Y242C 0.06 deleterious(0.01) possibly_damaging(0.464) TCGA-94-8490-01 16 31473249 31473249 T G ARMC5 Missense_Mutation p.I161S 0.32 deleterious(0) possibly_damaging(0.888) TCGA-94-8490-01 16 31473547 31473547 C - ARMC5 Frame_Shift_Del p.Q228Sfs*27 0.37 TCGA-94-8490-01 16 3170064 3170064 G A ZNF205 Missense_Mutation p.R468H 0.42 deleterious(0.01) probably_damaging(1) TCGA-94-8490-01 16 360012 360012 G A AXIN1 Silent p.S359S 0.29 TCGA-94-8490-01 16 4803011 4803011 G A ZNF500 Missense_Mutation p.P270L 0.10 tolerated(0.17) benign(0.003) TCGA-94-8490-01 16 55523726 55523726 C T MMP2 Silent p.C390C 0.40 TCGA-94-8490-01 16 55530931 55530931 G A MMP2 Silent p.A522A 0.39 TCGA-94-8490-01 16 57290809 57290809 C G PLLP 3'UTR 0.39 TCGA-94-8490-01 16 57449683 57449683 A T CCL17 Silent p.V65V 0.42 TCGA-94-8490-01 16 58075603 58075603 G A MMP15 Silent p.P331P 0.46 TCGA-94-8490-01 16 58545587 58545587 G A NDRG4 3'UTR 0.39 TCGA-94-8490-01 16 598138 598138 G A CAPN15 Missense_Mutation p.A434T 0.48 tolerated(0.11) benign(0.26) TCGA-94-8490-01 16 67290592 67290592 G T SLC9A5 Missense_Mutation p.G378C 0.34 deleterious(0) probably_damaging(1) TCGA-94-8490-01 16 67360788 67360788 A G LRRC36 Missense_Mutation p.D8G 0.24 deleterious(0.01) possibly_damaging(0.742) TCGA-94-8490-01 16 67980409 67980409 G C SLC12A4 Missense_Mutation p.S792C 0.35 deleterious(0.01) possibly_damaging(0.882) TCGA-94-8490-01 16 68867504 68867505 - A CDH1 3'UTR 0.31 TCGA-94-8490-01 16 69728029 69728029 A G NFAT5 Missense_Mutation p.Q1434R 0.20 benign(0.248) TCGA-94-8490-01 16 70016607 70016607 C T PDXDC2P RNA 0.34 TCGA-94-8490-01 16 70935050 70935050 G T HYDIN Silent p.R2969R 0.11 TCGA-94-8490-01 16 745703 745703 A G FBXL16 Missense_Mutation p.L285P 0.28 deleterious(0) probably_damaging(0.928) TCGA-94-8490-01 16 81151113 81151113 C A PKD1L2 RNA 0.19 TCGA-94-8490-01 16 81944248 81944248 G C PLCG2 Missense_Mutation p.E619D 0.34 tolerated(0.21) benign(0.006) TCGA-94-8490-01 16 81991640 81991640 C T PLCG2 3'UTR 0.31 TCGA-94-8490-01 16 82101891 82101891 T C HSD17B2 Missense_Mutation p.C128R 0.11 deleterious(0) probably_damaging(0.981) TCGA-94-8490-01 16 84690651 84690651 C T KLHL36 Missense_Mutation p.R80W 0.06 deleterious(0) probably_damaging(0.992) TCGA-94-8490-01 16 89764374 89764374 G - SPATA2L Frame_Shift_Del p.R215Efs*102 0.37 TCGA-94-8490-01 16 90162484 90162484 G T TUBB8P7 RNA 0.39 TCGA-94-8490-01 17 10358046 10358046 C T MYH4 Silent p.K839K 0.58 TCGA-94-8490-01 17 10533198 10533198 T A MYH3 Missense_Mutation p.Q1873H 0.57 deleterious(0) probably_damaging(0.992) TCGA-94-8490-01 17 14140020 14140020 C T CDRT15 Missense_Mutation p.R44H 0.65 tolerated_low_confidence(0.17) benign(0.003) TCGA-94-8490-01 17 14140165 14140165 C T CDRT15 5'UTR 0.11 TCGA-94-8490-01 17 15443873 15443873 C T TVP23C Intron 0.14 TCGA-94-8490-01 17 21319344 21319344 G A KCNJ12 Silent p.A230A 0.09 TCGA-94-8490-01 17 2344791 2344791 A G METTL16 Missense_Mutation p.I264T 0.79 tolerated(0.62) benign(0.003) TCGA-94-8490-01 17 26881180 26881180 A G PIGS 3'UTR 0.42 TCGA-94-8490-01 17 26975979 26975979 C T SDF2 3'UTR 0.33 TCGA-94-8490-01 17 30519310 30519310 T C RHOT1 Missense_Mutation p.F211L 0.09 tolerated(0.65) benign(0.006) TCGA-94-8490-01 17 33331300 33331300 G A LIG3 Silent p.L935L 0.38 TCGA-94-8490-01 17 35297919 35297919 G T LHX1 Missense_Mutation p.S137I 0.40 deleterious(0.01) benign(0.266) TCGA-94-8490-01 17 35300394 35300395 - C LHX1 Frame_Shift_Ins p.E399Rfs*106 0.27 TCGA-94-8490-01 17 35378272 35378273 - A AATF Frame_Shift_Ins p.V505Sfs*3 0.33 TCGA-94-8490-01 17 35787089 35787089 A C TADA2A Missense_Mutation p.D58A 0.42 deleterious(0.01) possibly_damaging(0.632) TCGA-94-8490-01 17 37557688 37557688 G T FBXL20 5'UTR 0.27 TCGA-94-8490-01 17 38555024 38555025 - T TOP2A Frame_Shift_Ins p.E1152Rfs*25 0.23 TCGA-94-8490-01 17 39316835 39316835 G A KRTAP4-4 Missense_Mutation p.R37C 0.38 unknown(0) TCGA-94-8490-01 17 40275025 40275025 G T HSPB9 Missense_Mutation p.G53C 0.12 deleterious(0) probably_damaging(0.961) TCGA-94-8490-01 17 44845714 44845714 C T WNT3 Missense_Mutation p.R347H 0.29 deleterious(0) possibly_damaging(0.735) TCGA-94-8490-01 17 45018036 45018036 T C GOSR2 3'UTR 0.07 TCGA-94-8490-01 17 45361949 45361949 A G ITGB3 Missense_Mutation p.M168V 0.40 deleterious(0) possibly_damaging(0.823) TCGA-94-8490-01 17 45369558 45369558 G A ITGB3 Silent p.K438K 0.37 TCGA-94-8490-01 17 45387698 45387698 A T ITGB3 3'UTR 0.67 TCGA-94-8490-01 17 46052991 46052991 C T CDK5RAP3 Nonsense_Mutation p.Q209* 0.31 TCGA-94-8490-01 17 48148801 48148801 G A ITGA3 Missense_Mutation p.R293Q 0.36 tolerated(0.64) benign(0.006) TCGA-94-8490-01 17 48603346 48603346 C T MYCBPAP Silent p.H672H 0.36 TCGA-94-8490-01 17 48755128 48755128 G A ABCC3 Silent p.R1134R 0.32 TCGA-94-8490-01 17 48827912 48827912 G C LUC7L3 Missense_Mutation p.E397Q 0.46 deleterious_low_confidence(0) possibly_damaging(0.727) TCGA-94-8490-01 17 56356548 56356548 G A MPO Missense_Mutation p.R236C 0.44 tolerated(0.06) probably_damaging(0.977) TCGA-94-8490-01 17 58511461 58511461 T - C17orf64 3'Flank 0.31 TCGA-94-8490-01 17 59147686 59147687 - AATT BCAS3 Intron 0.35 TCGA-94-8490-01 17 59152278 59152278 T C BCAS3 Intron 0.41 TCGA-94-8490-01 17 59543275 59543275 G A TBX4 Missense_Mutation p.R126H 0.04 deleterious(0) benign(0.331) TCGA-94-8490-01 17 59793371 59793371 T C BRIP1 Silent p.L811L 0.05 TCGA-94-8490-01 17 61511942 61511942 C T CYB561 Missense_Mutation p.A193T 0.10 tolerated(0.7) benign(0) TCGA-94-8490-01 17 66891079 66891079 C G ABCA8 Missense_Mutation p.R907T 0.08 deleterious(0) possibly_damaging(0.772) TCGA-94-8490-01 17 66924197 66924197 T C ABCA8 Missense_Mutation p.H378R 0.16 tolerated(0.29) benign(0.02) TCGA-94-8490-01 17 7139008 7139008 T C PHF23 Silent p.K383K 0.11 TCGA-94-8490-01 17 72915717 72915717 G A USH1G Missense_Mutation p.A405V 0.12 tolerated(0.5) benign(0.001) TCGA-94-8490-01 17 73058246 73058246 G A KCTD2 Missense_Mutation p.G223D 0.41 deleterious(0) possibly_damaging(0.867) TCGA-94-8490-01 17 73518242 73518242 G A TSEN54 Silent p.A360A 0.53 TCGA-94-8490-01 17 74001530 74001530 T C CDK3 3'UTR 0.07 TCGA-94-8490-01 17 7474873 7474873 T A SENP3 3'UTR 0.64 TCGA-94-8490-01 17 7481342 7481342 T G EIF4A1 Intron 0.25 TCGA-94-8490-01 17 7481895 7481895 G T EIF4A1 3'UTR 0.54 TCGA-94-8490-01 17 75205560 75205560 T A SEC14L1 Splice_Site p.X537_splice 0.41 TCGA-94-8490-01 17 75209484 75209484 G T SEC14L1 Missense_Mutation p.R651L 0.39 tolerated(0.67) possibly_damaging(0.827) TCGA-94-8490-01 17 75212767 75212767 G T SEC14L1 3'UTR 0.35 TCGA-94-8490-01 17 79094342 79094342 G A AATK Missense_Mutation p.R1132W 0.45 deleterious(0.02) benign(0.032) TCGA-94-8490-01 17 80014520 80014520 G A GPS1 Missense_Mutation p.V418M 0.36 tolerated(0.2) benign(0.016) TCGA-94-8490-01 17 9503418 9503418 C A WDR16 Missense_Mutation p.T224N 0.62 deleterious(0) probably_damaging(0.995) TCGA-94-8490-01 18 12264311 12264311 G - CIDEA Frame_Shift_Del p.D64Mfs*37 0.27 TCGA-94-8490-01 18 12325245 12325245 A T TUBB6 Missense_Mutation p.S153C 0.36 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-94-8490-01 18 12454350 12454351 - T SPIRE1 Frame_Shift_Ins p.G591Rfs*25 0.24 TCGA-94-8490-01 18 13116433 13116433 G A CEP192 Silent p.R2449R 0.38 TCGA-94-8490-01 18 14105281 14105281 T C ZNF519 Missense_Mutation p.T420A 0.06 tolerated(0.06) benign(0.013) TCGA-94-8490-01 18 14511919 14511919 A C POTEC Missense_Mutation p.L536R 0.50 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-94-8490-01 18 15316763 15316763 T C RNU6-721P 3'Flank 0.20 TCGA-94-8490-01 18 19751311 19751311 C T GATA6 Missense_Mutation p.A69V 0.52 deleterious_low_confidence(0) benign(0.236) TCGA-94-8490-01 18 29178567 29178567 T C TTR Missense_Mutation p.Y125H 0.34 deleterious(0.02) probably_damaging(1) TCGA-94-8490-01 18 32409055 32409055 C G DTNA Intron 0.37 TCGA-94-8490-01 18 32409107 32409107 G T DTNA Intron 0.32 TCGA-94-8490-01 18 334817 334818 - G COLEC12 Frame_Shift_Ins p.G581Rfs*17 0.31 TCGA-94-8490-01 18 3457780 3457780 A G TGIF1 Missense_Mutation p.K350E 0.09 tolerated_low_confidence(0.05) benign(0.23) TCGA-94-8490-01 18 34846521 34846521 G A CELF4 Silent p.Y380Y 0.25 TCGA-94-8490-01 18 42530582 42530582 C T SETBP1 Missense_Mutation p.A426V 0.39 tolerated(0.28) benign(0.187) TCGA-94-8490-01 18 43405693 43405693 C T SIGLEC15 5'UTR 0.27 TCGA-94-8490-01 18 46956743 46956743 T A DYM Missense_Mutation p.I8F 0.26 tolerated(0.56) possibly_damaging(0.609) TCGA-94-8490-01 18 51820944 51820944 G A POLI 3'UTR 0.33 TCGA-94-8490-01 18 52895482 52895482 C T TCF4 Missense_Mutation p.A766T 0.09 tolerated(0.45) benign(0.032) TCGA-94-8490-01 18 59894588 59894588 C T KIAA1468 Missense_Mutation p.R309W 0.38 deleterious(0) probably_damaging(0.999) TCGA-94-8490-01 18 60036499 60036499 G T TNFRSF11A Missense_Mutation p.R450L 0.35 tolerated(0.3) benign(0.137) TCGA-94-8490-01 18 6138264 6138264 T C L3MBTL4 Silent p.Q376Q 0.19 TCGA-94-8490-01 18 70534599 70534599 G T NETO1 5'UTR 0.36 TCGA-94-8490-01 18 72999498 72999498 C G TSHZ1 Silent p.T667T 0.05 TCGA-94-8490-01 18 74593429 74593430 - A ZNF236 Frame_Shift_Ins p.M461Nfs*104 0.33 TCGA-94-8490-01 18 9257405 9257405 G T ANKRD12 Missense_Mutation p.K1380N 0.10 deleterious_low_confidence(0) benign(0.185) TCGA-94-8490-01 18 9549239 9549239 C T PPP4R1 Missense_Mutation p.R882Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-94-8490-01 19 10291235 10291235 A G DNMT1 Missense_Mutation p.L79P 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-94-8490-01 19 10402961 10402961 C T ICAM5 Silent p.G308G 0.43 TCGA-94-8490-01 19 1043061 1043061 G T ABCA7 Missense_Mutation p.V201L 0.35 tolerated(0.35) benign(0.001) TCGA-94-8490-01 19 10610366 10610366 A T KEAP1 Missense_Mutation p.L115Q 0.30 deleterious(0) probably_damaging(0.992) TCGA-94-8490-01 19 1068595 1068595 C A HMHA1 Missense_Mutation p.H107Q 0.42 tolerated(0.22) benign(0.041) TCGA-94-8490-01 19 1068596 1068596 C G HMHA1 Missense_Mutation p.R108G 0.41 tolerated(0.09) possibly_damaging(0.586) TCGA-94-8490-01 19 11101983 11101983 G T SMARCA4 Missense_Mutation p.R468L 0.42 probably_damaging(1) TCGA-94-8490-01 19 11617210 11617210 G A ECSIT Missense_Mutation p.A362V 0.11 tolerated(0.15) possibly_damaging(0.509) TCGA-94-8490-01 19 11942596 11942596 G A ZNF440 Missense_Mutation p.C202Y 0.36 deleterious(0) benign(0.343) TCGA-94-8490-01 19 12575968 12575968 T C ZNF709 Silent p.Q256Q 0.35 TCGA-94-8490-01 19 12790340 12790340 A G DHPS Silent p.P203P 0.37 TCGA-94-8490-01 19 12975633 12975633 T G MAST1 Missense_Mutation p.C459W 0.28 deleterious(0) probably_damaging(0.998) TCGA-94-8490-01 19 12984646 12984646 G A MAST1 Silent p.T1225T 0.31 TCGA-94-8490-01 19 13050350 13050350 A G CALR Missense_Mutation p.Q101R 0.37 deleterious(0) probably_damaging(0.994) TCGA-94-8490-01 19 13054671 13054671 G C CALR Missense_Mutation p.D400H 0.42 tolerated(0.09) unknown(0) TCGA-94-8490-01 19 13941133 13941133 C T ZSWIM4 Missense_Mutation p.R747W 0.35 deleterious(0) unknown(0) TCGA-94-8490-01 19 14076483 14076483 C A RFX1 Missense_Mutation p.G690C 0.22 deleterious(0.02) possibly_damaging(0.894) TCGA-94-8490-01 19 1468356 1468356 T G APC2 Missense_Mutation p.W1686G 0.25 probably_damaging(0.999) TCGA-94-8490-01 19 15272466 15272466 C A NOTCH3 Silent p.L1991L 0.33 TCGA-94-8490-01 19 15484823 15484823 C T AKAP8 Missense_Mutation p.A49T 0.39 tolerated(0.1) benign(0.147) TCGA-94-8490-01 19 16687958 16687958 G A MED26 Missense_Mutation p.P228L 0.38 deleterious(0) probably_damaging(0.986) TCGA-94-8490-01 19 17108089 17108098 AGGGACGTCC TGGGATGTCT CPAMD8 Missense_Mutation p.V355I 0.11 TCGA-94-8490-01 19 17515239 17515239 A G BST2 Missense_Mutation p.L98P 0.22 deleterious(0) probably_damaging(1) TCGA-94-8490-01 19 18245741 18245741 G T MAST3 Missense_Mutation p.V578L 0.32 deleterious(0) possibly_damaging(0.529) TCGA-94-8490-01 19 19627035 19627035 G A NDUFA13 5'UTR 0.37 TCGA-94-8490-01 19 19751003 19751003 T A GMIP Splice_Site p.X144_splice 0.33 TCGA-94-8490-01 19 19756509 19756509 C A ATP13A1 Missense_Mutation p.G1151C 0.32 deleterious(0) probably_damaging(1) TCGA-94-8490-01 19 20307963 20307963 T C ZNF486 Silent p.T148T 0.35 TCGA-94-8490-01 19 20748516 20748516 C A ZNF737 5'UTR 0.36 TCGA-94-8490-01 19 21239514 21239514 A G ZNF430 Missense_Mutation p.R134G 0.32 tolerated(0.06) benign(0.027) TCGA-94-8490-01 19 21512058 21512058 C A ZNF708 5'UTR 0.10 TCGA-94-8490-01 19 23836013 23836013 T C ZNF675 3'UTR 0.12 TCGA-94-8490-01 19 24309372 24309373 - T ZNF254 Frame_Shift_Ins p.C192Lfs*6 0.23 TCGA-94-8490-01 19 282199 282199 A G PPAP2C Missense_Mutation p.Y239H 0.07 tolerated(0.37) benign(0.041) TCGA-94-8490-01 19 2993544 2993544 G A TLE6 Missense_Mutation p.D501N 0.37 tolerated(0.11) probably_damaging(0.909) TCGA-94-8490-01 19 33623231 33623231 G A WDR88 Silent p.T52T 0.40 TCGA-94-8490-01 19 36293954 36293954 A G PRODH2 Missense_Mutation p.L419P 0.38 deleterious(0) probably_damaging(0.996) TCGA-94-8490-01 19 36387340 36387340 G A NFKBID Missense_Mutation p.S120L 0.69 deleterious(0) possibly_damaging(0.636) TCGA-94-8490-01 19 38160795 38160795 A G ZNF781 Silent p.S85S 0.55 TCGA-94-8490-01 19 3977986 3977986 C T EEF2 Missense_Mutation p.R633H 0.34 deleterious(0.02) benign(0.01) TCGA-94-8490-01 19 40419679 40419679 C A FCGBP Silent p.L1105L 0.61 TCGA-94-8490-01 19 4054185 4054185 A G ZBTB7A Missense_Mutation p.M349T 0.32 tolerated(0.17) benign(0.026) TCGA-94-8490-01 19 41448096 41448096 T G AC092071.1 5'Flank 0.65 TCGA-94-8490-01 19 4168347 4168347 G A CREB3L3 Splice_Site p.X239_splice 0.38 TCGA-94-8490-01 19 43528933 43528933 G A PSG11 Missense_Mutation p.R114W 0.58 deleterious(0.03) benign(0.012) TCGA-94-8490-01 19 45316559 45316559 A C BCAM Missense_Mutation p.Y186S 0.57 deleterious(0.04) probably_damaging(0.966) TCGA-94-8490-01 19 47724984 47724984 C A BBC3 Missense_Mutation p.A254S 0.59 tolerated_low_confidence(0.06) probably_damaging(0.923) TCGA-94-8490-01 19 48800179 48800179 A - CCDC114 3'UTR 0.67 TCGA-94-8490-01 19 4950725 4950725 G T UHRF1 RNA 0.33 TCGA-94-8490-01 19 51322600 51322600 A G KLK1 Silent p.D213D 0.07 TCGA-94-8490-01 19 5210595 5210595 T C PTPRS Missense_Mutation p.H1791R 0.09 deleterious(0) benign(0.375) TCGA-94-8490-01 19 54652144 54652144 A G CNOT3 Missense_Mutation p.T386A 0.10 tolerated(0.51) benign(0) TCGA-94-8490-01 19 55317464 55317464 G A KIR2DL4 Silent p.E140E 0.56 TCGA-94-8490-01 19 55858905 55858905 G A SUV420H2 3'UTR 0.40 TCGA-94-8490-01 19 55997930 55997930 C T NAT14 Silent p.A76A 0.80 TCGA-94-8490-01 19 58067821 58067821 A G ZNF550 5'Flank 0.54 TCGA-94-8490-01 19 58427894 58427895 - C ZNF417 5'UTR 0.54 TCGA-94-8490-01 19 58773995 58773997 CTT - ZNF544 In_Frame_Del p.L676del 0.60 TCGA-94-8490-01 19 58867952 58867952 G A ZNF497 Silent p.R350R 0.75 TCGA-94-8490-01 19 58988573 58988573 C T ZNF446 5'UTR 0.51 TCGA-94-8490-01 19 6590889 6590889 G A CD70 Missense_Mutation p.A42V 0.33 tolerated(0.28) benign(0.001) TCGA-94-8490-01 19 6751254 6751254 C T TRIP10 3'UTR 0.10 TCGA-94-8490-01 19 7809098 7809098 A G CD209 Missense_Mutation p.L303P 0.05 deleterious(0) probably_damaging(1) TCGA-94-8490-01 19 9056521 9056521 C G MUC16 Missense_Mutation p.E10309Q 0.09 benign(0.092) TCGA-94-8490-01 1 100661894 100661894 C A DBT Missense_Mutation p.D456Y 0.61 deleterious(0) probably_damaging(0.999) TCGA-94-8490-01 1 101387314 101387314 T C SLC30A7 Silent p.A253A 0.50 TCGA-94-8490-01 1 104162230 104162230 G A AMY2A Missense_Mutation p.V190M 0.39 deleterious(0) probably_damaging(0.995) TCGA-94-8490-01 1 114397666 114397666 A T PTPN22 Silent p.T182T 0.62 TCGA-94-8490-01 1 115229399 115229399 C T AMPD1 Silent p.Q149Q 0.59 TCGA-94-8490-01 1 145417038 145417038 C A HFE2 3'UTR 0.59 TCGA-94-8490-01 1 145538011 145538011 A T ITGA10 Missense_Mutation p.E897V 0.63 deleterious(0) probably_damaging(0.999) TCGA-94-8490-01 1 145818814 145818815 - A GPR89A Frame_Shift_Ins p.G19Wfs*13 0.18 TCGA-94-8490-01 1 146747848 146747848 T C CHD1L Missense_Mutation p.L489P 0.22 deleterious(0) probably_damaging(0.986) TCGA-94-8490-01 1 149900909 149900909 A C MTMR11 3'UTR 0.21 TCGA-94-8490-01 1 149904153 149904153 T C MTMR11 Intron 0.20 TCGA-94-8490-01 1 151021145 151021145 T C C1orf56 Silent p.C274C 0.20 TCGA-94-8490-01 1 151156842 151156842 T A VPS72 Missense_Mutation p.E171D 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-94-8490-01 1 152384719 152384719 C T CRNN 5'UTR 0.62 TCGA-94-8490-01 1 152488122 152488122 C T CRCT1 Missense_Mutation p.S88F 0.39 unknown(0) TCGA-94-8490-01 1 153908586 153908586 G A DENND4B Missense_Mutation p.R840C 0.18 deleterious(0) benign(0.402) TCGA-94-8490-01 1 154320916 154320916 G C ATP8B2 Missense_Mutation p.V1099L 0.10 tolerated(0.41) probably_damaging(0.987) TCGA-94-8490-01 1 155147882 155147882 G A TRIM46 Silent p.E28E 0.21 TCGA-94-8490-01 1 155261554 155261554 A T PKLR Silent p.I537I 0.06 TCGA-94-8490-01 1 155307279 155307279 C A ASH1L 3'UTR 0.19 TCGA-94-8490-01 1 155884193 155884193 A G KIAA0907 Intron 0.13 TCGA-94-8490-01 1 155886439 155886439 T C KIAA0907 Silent p.S510S 0.19 TCGA-94-8490-01 1 156220654 156220654 T C SMG5 Missense_Mutation p.M988V 0.22 tolerated(0.29) benign(0) TCGA-94-8490-01 1 158151506 158151506 T C CD1D Missense_Mutation p.L108S 0.06 tolerated(0.1) benign(0.066) TCGA-94-8490-01 1 158624478 158624478 C T SPTA1 Missense_Mutation p.D987N 0.06 deleterious(0) probably_damaging(1) TCGA-94-8490-01 1 159827625 159827625 A T VSIG8 Missense_Mutation p.Y188N 0.08 tolerated(0.26) benign(0.021) TCGA-94-8490-01 1 159897007 159897007 A G IGSF9 3'UTR 0.18 TCGA-94-8490-01 1 160095004 160095004 A T ATP1A2 Missense_Mutation p.T237S 0.61 tolerated(0.14) possibly_damaging(0.609) TCGA-94-8490-01 1 161199364 161199364 G C TOMM40L 3'UTR 0.71 TCGA-94-8490-01 1 162824449 162824449 T A C1orf110 3'UTR 0.19 TCGA-94-8490-01 1 163310152 163310152 A G NUF2 Splice_Site p.X203_splice 0.17 TCGA-94-8490-01 1 165514110 165514110 C A LRRC52 Missense_Mutation p.L193M 0.06 tolerated(0.18) benign(0.081) TCGA-94-8490-01 1 167097796 167097796 G A DUSP27 Missense_Mutation p.R1143H 0.17 deleterious(0.01) possibly_damaging(0.73) TCGA-94-8490-01 1 167734986 167734986 G T MPZL1 Silent p.S86S 0.19 TCGA-94-8490-01 1 169080627 169080627 C T ATP1B1 Silent p.Y39Y 0.05 TCGA-94-8490-01 1 169831834 169831834 G A SCYL3 Missense_Mutation p.R354W 0.20 deleterious(0) probably_damaging(1) TCGA-94-8490-01 1 169985669 169985669 A G KIFAP3 Missense_Mutation p.F373L 0.23 deleterious(0.04) probably_damaging(0.999) TCGA-94-8490-01 1 171251246 171251246 A G FMO1 Silent p.E319E 0.21 TCGA-94-8490-01 1 171505368 171505368 T C PRRC2C Silent p.P746P 0.17 TCGA-94-8490-01 1 171511248 171511248 A G PRRC2C Missense_Mutation p.Q1546R 0.18 unknown(0) TCGA-94-8490-01 1 173456983 173456983 G A PRDX6 Missense_Mutation p.R219H 0.27 tolerated(0.05) benign(0.064) TCGA-94-8490-01 1 174973960 174973960 A G CACYBP Missense_Mutation p.S76G 0.21 deleterious(0.01) benign(0.372) TCGA-94-8490-01 1 175365738 175365738 G A TNR Silent p.S394S 0.05 TCGA-94-8490-01 1 176050288 176050288 C A RFWD2 Missense_Mutation p.S426I 0.16 deleterious(0) probably_damaging(0.997) TCGA-94-8490-01 1 176905297 176905297 A G ASTN1 Intron 0.18 TCGA-94-8490-01 1 177249927 177249927 G C BRINP2 Missense_Mutation p.G539R 0.19 deleterious(0.01) probably_damaging(0.941) TCGA-94-8490-01 1 17725308 17725308 A G PADI6 RNA 0.70 TCGA-94-8490-01 1 179782985 179782985 G C FAM163A Silent p.T55T 0.63 TCGA-94-8490-01 1 181702138 181702138 G A CACNA1E Silent p.T972T 0.14 TCGA-94-8490-01 1 183197630 183197630 T A LAMC2 Missense_Mutation p.N530K 0.20 deleterious(0.03) possibly_damaging(0.713) TCGA-94-8490-01 1 186915811 186915811 A G PLA2G4A Missense_Mutation p.Y359C 0.31 deleterious(0) probably_damaging(1) TCGA-94-8490-01 1 190423784 190423784 C A BRINP3 Splice_Site p.X79_splice 0.34 TCGA-94-8490-01 1 192992997 192992999 CTG - UCHL5 In_Frame_Del p.A236del 0.24 TCGA-94-8490-01 1 196398720 196398720 A G KCNT2 Missense_Mutation p.V269A 0.21 deleterious(0.02) possibly_damaging(0.872) TCGA-94-8490-01 1 196706674 196706674 A C CFH Missense_Mutation p.E889A 0.24 deleterious(0.01) benign(0.163) TCGA-94-8490-01 1 197168526 197168526 T - ZBTB41 Frame_Shift_Del p.I360Yfs*14 0.10 TCGA-94-8490-01 1 197398733 197398733 A G CRB1 Missense_Mutation p.Q944R 0.05 tolerated(0.29) benign(0.006) TCGA-94-8490-01 1 201022696 201022696 C T CACNA1S Missense_Mutation p.R1229H 0.38 deleterious(0.01) probably_damaging(0.977) TCGA-94-8490-01 1 201751864 201751864 A T NAV1 Nonsense_Mutation p.K742* 0.40 TCGA-94-8490-01 1 201751866 201751866 A G NAV1 Silent p.K742K 0.40 TCGA-94-8490-01 1 203786225 203786225 T - ZC3H11A Frame_Shift_Del p.F12Sfs*20 0.33 TCGA-94-8490-01 1 203816780 203816780 G T ZC3H11A Missense_Mutation p.G504V 0.33 tolerated(0.12) benign(0.02) TCGA-94-8490-01 1 204006614 204006614 A G LINC00303 RNA 0.29 TCGA-94-8490-01 1 205117416 205117416 T C DSTYK Missense_Mutation p.Y840C 0.10 deleterious(0) probably_damaging(1) TCGA-94-8490-01 1 205719146 205719147 - C NUCKS1 5'UTR 0.26 TCGA-94-8490-01 1 206317510 206317510 C T CTSE 5'UTR 0.33 TCGA-94-8490-01 1 213446107 213446107 G - RPS6KC1 3'UTR 0.32 TCGA-94-8490-01 1 216246441 216246441 G A USH2A Missense_Mutation p.T1925I 0.34 possibly_damaging(0.703) TCGA-94-8490-01 1 218607507 218607507 G A TGFB2 Nonsense_Mutation p.W226* 0.12 TCGA-94-8490-01 1 219383956 219383956 T A LYPLAL1 Silent p.S148S 0.38 TCGA-94-8490-01 1 220324483 220324483 A - RAB3GAP2 3'UTR 0.44 TCGA-94-8490-01 1 223286202 223286202 T C TLR5 Missense_Mutation p.I58V 0.12 deleterious(0.03) possibly_damaging(0.674) TCGA-94-8490-01 1 223408279 223408279 G A SUSD4 Intron 0.37 TCGA-94-8490-01 1 224588719 224588719 C A WDR26 Missense_Mutation p.S451I 0.34 tolerated(0.09) benign(0.215) TCGA-94-8490-01 1 227268608 227268608 T G CDC42BPA Silent p.T822T 0.06 TCGA-94-8490-01 1 230798959 230798959 A - COG2 Frame_Shift_Del p.K127Rfs*5 0.27 TCGA-94-8490-01 1 234582601 234582601 C T TARBP1 Silent p.L694L 0.38 TCGA-94-8490-01 1 235969998 235969998 C T LYST Missense_Mutation p.R813Q 0.42 deleterious(0) possibly_damaging(0.895) TCGA-94-8490-01 1 237753206 237753206 C T RYR2 Missense_Mutation p.P1238S 0.35 benign(0.022) TCGA-94-8490-01 1 237947359 237947359 A G RYR2 Missense_Mutation p.Q4116R 0.42 benign(0.032) TCGA-94-8490-01 1 24120833 24120833 C - LYPLA2 Intron 0.20 TCGA-94-8490-01 1 241676975 241676975 C T FH Silent p.A102A 0.34 TCGA-94-8490-01 1 245025988 245025988 C A HNRNPU Missense_Mutation p.V246F 0.26 tolerated(0.13) benign(0.403) TCGA-94-8490-01 1 245775266 245775266 G T KIF26B Missense_Mutation p.G696W 0.25 deleterious(0) unknown(0) TCGA-94-8490-01 1 246797256 246797256 A C CNST Missense_Mutation p.E216A 0.13 deleterious(0) probably_damaging(0.999) TCGA-94-8490-01 1 247582297 247582297 G A NLRP3 Silent p.A67A 0.31 TCGA-94-8490-01 1 247615276 247615276 A G OR2B11 Silent p.S3S 0.38 TCGA-94-8490-01 1 247695745 247695745 T C OR2C3 Silent p.S23S 0.40 TCGA-94-8490-01 1 248309276 248309276 T C OR2M5 Missense_Mutation p.V276A 0.43 tolerated(1) benign(0.009) TCGA-94-8490-01 1 248570265 248570265 C A OR2T1 Missense_Mutation p.L324I 0.38 deleterious(0.02) benign(0.232) TCGA-94-8490-01 1 248789653 248789653 G C OR2T11 Silent p.P259P 0.40 TCGA-94-8490-01 1 3680286 3680288 ACA - CCDC27 In_Frame_Del p.Q449del 0.09 TCGA-94-8490-01 1 36939178 36939178 G A CSF3R Silent p.C177C 0.60 TCGA-94-8490-01 1 43102933 43102934 - A CCDC30 Frame_Shift_Ins p.V510Sfs*12 0.35 TCGA-94-8490-01 1 44684762 44684762 G A DMAP1 Missense_Mutation p.R252H 0.62 deleterious(0) probably_damaging(0.993) TCGA-94-8490-01 1 45101914 45101914 C T RNF220 Intron 0.68 TCGA-94-8490-01 1 47078838 47078838 G - MOB3C Frame_Shift_Del p.E106Rfs*102 0.39 TCGA-94-8490-01 1 52520880 52520880 T - TXNDC12 5'UTR 0.69 TCGA-94-8490-01 1 54395741 54395741 A T HSPB11 Missense_Mutation p.I59N 0.08 deleterious(0) probably_damaging(0.993) TCGA-94-8490-01 1 66067255 66067256 - T LEPR Frame_Shift_Ins p.N395Qfs*4 0.12 TCGA-94-8490-01 1 67161038 67161038 T C SGIP1 Intron 0.14 TCGA-94-8490-01 1 71531384 71531384 T C ZRANB2 Intron 0.08 TCGA-94-8490-01 1 75038761 75038761 T G C1orf173 Missense_Mutation p.K878T 0.60 tolerated(0.11) benign(0.079) TCGA-94-8490-01 1 77949015 77949015 T G AK5 Nonsense_Mutation p.L358* 0.55 TCGA-94-8490-01 1 78383696 78383696 G C NEXN Missense_Mutation p.E91Q 0.54 tolerated(0.12) possibly_damaging(0.645) TCGA-94-8490-01 1 84387050 84387050 G C TTLL7 Silent p.A390A 0.51 TCGA-94-8490-01 1 84412939 84412939 T C TTLL7 Missense_Mutation p.Y125C 0.10 deleterious(0) probably_damaging(0.996) TCGA-94-8490-01 1 92979159 92979159 A T EVI5 3'UTR 0.61 TCGA-94-8490-01 1 98015257 98015257 G C DPYD Silent p.L461L 0.55 TCGA-94-8490-01 20 10625551 10625551 G A JAG1 Silent p.C768C 0.23 TCGA-94-8490-01 20 16352331 16352331 A C KIF16B Missense_Mutation p.S1142R 0.35 tolerated_low_confidence(0.15) benign(0.008) TCGA-94-8490-01 20 2083497 2083497 G A STK35 Silent p.L126L 0.16 TCGA-94-8490-01 20 2293602 2293602 G T TGM3 Missense_Mutation p.R200L 0.68 deleterious(0.01) possibly_damaging(0.787) TCGA-94-8490-01 20 2398205 2398205 T A TGM6 Missense_Mutation p.L555Q 0.18 deleterious(0) probably_damaging(0.991) TCGA-94-8490-01 20 24988245 24988245 C G ACSS1 3'UTR 0.27 TCGA-94-8490-01 20 2641561 2641561 C A IDH3B Missense_Mutation p.R131L 0.18 tolerated(0.35) benign(0.392) TCGA-94-8490-01 20 31022441 31022442 - G ASXL1 Frame_Shift_Ins p.G646Wfs*12 0.27 TCGA-94-8490-01 20 32660062 32660062 A G RALY Missense_Mutation p.Q61R 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-94-8490-01 20 3356832 3356832 T A C20orf194 Missense_Mutation p.E134V 0.18 deleterious(0) possibly_damaging(0.833) TCGA-94-8490-01 20 34828476 34828476 G A AAR2 Missense_Mutation p.S229N 0.31 tolerated(0.07) benign(0.107) TCGA-94-8490-01 20 35555608 35555608 C A SAMHD1 Missense_Mutation p.A225S 0.04 deleterious(0.01) benign(0.403) TCGA-94-8490-01 20 368786 368786 C G TRIB3 Silent p.P44P 0.14 TCGA-94-8490-01 20 3734741 3734741 G A C20orf27 Silent p.Y188Y 0.14 TCGA-94-8490-01 20 3888805 3888805 T C PANK2 Silent p.F287F 0.20 TCGA-94-8490-01 20 43132463 43132463 A G SERINC3 Missense_Mutation p.Y350H 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-94-8490-01 20 43585048 43585048 T C TOMM34 Missense_Mutation p.D69G 0.07 tolerated(0.73) benign(0.033) TCGA-94-8490-01 20 47860465 47860465 A - DDX27 3'UTR 0.36 TCGA-94-8490-01 20 47990350 47990350 G A KCNB1 Nonsense_Mutation p.R583* 0.06 TCGA-94-8490-01 20 52188261 52188261 T - ZNF217 Intron 0.30 TCGA-94-8490-01 20 52198543 52198544 - T ZNF217 Frame_Shift_Ins p.S275Ifs*4 0.27 TCGA-94-8490-01 20 56886153 56886153 G A RAB22A Missense_Mutation p.D31N 0.40 tolerated(0.43) benign(0.016) TCGA-94-8490-01 20 57569724 57569724 T C NELFCD Missense_Mutation p.V598A 0.41 deleterious_low_confidence(0.01) benign(0.13) TCGA-94-8490-01 20 590656 590656 C T TCF15 Missense_Mutation p.A76T 0.21 tolerated(0.4) benign(0.23) TCGA-94-8490-01 20 60910277 60910277 T C LAMA5 Missense_Mutation p.Q791R 0.39 benign(0.173) TCGA-94-8490-01 20 61527908 61527908 A G DIDO1 Missense_Mutation p.S677P 0.22 probably_damaging(0.999) TCGA-94-8490-01 20 62842579 62842579 C T MYT1 Missense_Mutation p.R438C 0.39 probably_damaging(0.995) TCGA-94-8490-01 20 6759535 6759535 T C BMP2 Silent p.P330P 0.14 TCGA-94-8490-01 21 16340403 16340403 A G NRIP1 Silent p.V37V 0.63 TCGA-94-8490-01 21 22910361 22910361 T A NCAM2 3'UTR 0.47 TCGA-94-8490-01 21 30715014 30715014 G A BACH1 Missense_Mutation p.G691S 0.35 tolerated(0.59) benign(0.004) TCGA-94-8490-01 21 31691783 31691783 T C KRTAP26-1 Missense_Mutation p.S191G 0.08 tolerated(0.51) benign(0.005) TCGA-94-8490-01 21 31933418 31933418 C G KRTAP19-7 Nonstop_Mutation p.*64Sext*4 0.38 TCGA-94-8490-01 21 34066594 34066594 A T SYNJ1 Missense_Mutation p.S284T 0.38 deleterious(0) probably_damaging(0.999) TCGA-94-8490-01 21 34809285 34809285 T A IFNGR2 3'UTR 0.07 TCGA-94-8490-01 21 38114103 38114103 C T SIM2 Silent p.T312T 0.33 TCGA-94-8490-01 21 41033253 41033253 G C B3GALT5 Missense_Mutation p.R256T 0.31 tolerated(0.48) benign(0.021) TCGA-94-8490-01 21 41416027 41416027 G A DSCAM Silent p.S1787S 0.13 TCGA-94-8490-01 21 42540489 42540489 C - BACE2 Frame_Shift_Del p.P102Rfs*25 0.39 TCGA-94-8490-01 21 42767684 42767684 A G MX2 Missense_Mutation p.T348A 0.34 tolerated(0.91) benign(0.003) TCGA-94-8490-01 21 43161014 43161014 C A RIPK4 Missense_Mutation p.R780L 0.39 deleterious_low_confidence(0.01) benign(0.01) TCGA-94-8490-01 21 43187162 43187162 G A RIPK4 Silent p.L14L 0.26 TCGA-94-8490-01 21 43504264 43504264 C A UMODL1 Silent p.T130T 0.39 TCGA-94-8490-01 21 43979097 43979097 A G SLC37A1 Silent p.S293S 0.34 TCGA-94-8490-01 21 43988497 43988497 G T SLC37A1 Missense_Mutation p.A458S 0.08 tolerated(0.85) benign(0.129) TCGA-94-8490-01 21 45548209 45548209 G A PWP2 Missense_Mutation p.R814H 0.35 tolerated(0.15) benign(0.005) TCGA-94-8490-01 21 46285308 46285308 A G PTTG1IP Splice_Site p.X56_splice 0.11 TCGA-94-8490-01 22 16267063 16267063 A T POTEH Silent p.T462T 0.14 TCGA-94-8490-01 22 19048347 19048347 C A DGCR2 Intron 0.52 TCGA-94-8490-01 22 20103827 20103827 G A TRMT2A Silent p.C111C 0.38 TCGA-94-8490-01 22 20718550 20718550 C A USP41 Missense_Mutation p.G317C 0.07 deleterious(0) probably_damaging(1) TCGA-94-8490-01 22 22599379 22599379 T A VPREB1 Missense_Mutation p.L23Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-94-8490-01 22 22930995 22930995 A G IGLV2-33 Missense_Mutation p.T64A 0.12 tolerated_low_confidence(1) benign(0.001) TCGA-94-8490-01 22 24938854 24938854 C A GUCD1 3'UTR 0.44 TCGA-94-8490-01 22 25308689 25308689 G A SGSM1 Silent p.T1021T 0.27 TCGA-94-8490-01 22 26070443 26070443 C T ADRBK2 Nonsense_Mutation p.R199* 0.12 TCGA-94-8490-01 22 26228894 26228894 C A MYO18B Missense_Mutation p.P997H 0.05 tolerated(0.09) benign(0.135) TCGA-94-8490-01 22 28192817 28192817 C T MN1 Missense_Mutation p.A1239T 0.05 benign(0.001) TCGA-94-8490-01 22 29682980 29682980 C A EWSR1 Missense_Mutation p.P223Q 0.32 tolerated(0.79) unknown(0) TCGA-94-8490-01 22 29754917 29754917 C T AP1B1 Missense_Mutation p.R108Q 0.49 deleterious(0) probably_damaging(1) TCGA-94-8490-01 22 32753957 32753957 A G RFPL3 5'UTR 0.39 TCGA-94-8490-01 22 35659156 35659156 T A HMGXB4 Missense_Mutation p.D39E 0.48 deleterious(0) probably_damaging(0.996) TCGA-94-8490-01 22 37414405 37414405 G A TST Silent p.T123T 0.37 TCGA-94-8490-01 22 37770817 37770817 C T ELFN2 Missense_Mutation p.R253Q 0.44 tolerated(0.56) benign(0.119) TCGA-94-8490-01 22 39436957 39436957 C T APOBEC3F 5'UTR 0.33 TCGA-94-8490-01 22 40057212 40057212 C - CACNA1I Frame_Shift_Del p.R935Dfs*23 0.27 TCGA-94-8490-01 22 40075191 40075191 G A CACNA1I Missense_Mutation p.S1712N 0.47 deleterious(0.03) possibly_damaging(0.517) TCGA-94-8490-01 22 40161278 40161278 G T ENTHD1 Missense_Mutation p.A390E 0.33 tolerated(0.13) benign(0.103) TCGA-94-8490-01 22 41566457 41566457 A G EP300 Missense_Mutation p.D1445G 0.34 probably_damaging(1) TCGA-94-8490-01 22 41626223 41626223 G C L3MBTL2 Missense_Mutation p.V696L 0.32 tolerated_low_confidence(0.27) benign(0) TCGA-94-8490-01 22 42263226 42263226 G T SREBF2 Silent p.P160P 0.38 TCGA-94-8490-01 22 43089582 43089582 G A A4GALT Missense_Mutation p.R126W 0.34 deleterious(0) probably_damaging(0.939) TCGA-94-8490-01 22 46785285 46785285 C A CELSR1 Missense_Mutation p.V2153L 0.37 tolerated(0.2) benign(0.182) TCGA-94-8490-01 2 101885758 101885758 A G CNOT11 Missense_Mutation p.I472M 0.31 deleterious(0) probably_damaging(0.995) TCGA-94-8490-01 2 10560207 10560207 C T HPCAL1 Silent p.Y108Y 0.31 TCGA-94-8490-01 2 113310364 113310364 C G POLR1B Missense_Mutation p.P377A 0.28 tolerated(0.61) benign(0.119) TCGA-94-8490-01 2 113788731 113788731 C T IL36B Silent p.R5R 0.10 TCGA-94-8490-01 2 11800178 11800178 G A NTSR2 Missense_Mutation p.A327V 0.20 tolerated(0.28) benign(0.016) TCGA-94-8490-01 2 119600591 119600591 G T EN1 Missense_Mutation p.L368M 0.05 deleterious(0.01) probably_damaging(1) TCGA-94-8490-01 2 127453705 127453705 A T GYPC Missense_Mutation p.E125V 0.28 deleterious(0) probably_damaging(0.998) TCGA-94-8490-01 2 131103264 131103264 G T IMP4 Missense_Mutation p.G144V 0.30 deleterious(0) probably_damaging(0.987) TCGA-94-8490-01 2 135012052 135012052 T C MGAT5 Silent p.G26G 0.07 TCGA-94-8490-01 2 135957932 135957932 G A ZRANB3 Nonsense_Mutation p.R1074* 0.60 TCGA-94-8490-01 2 136872463 136872463 C A CXCR4 Missense_Mutation p.E349D 0.67 tolerated_low_confidence(0.53) unknown(0) TCGA-94-8490-01 2 141135857 141135857 T A LRP1B Splice_Site p.X3511_splice 0.28 TCGA-94-8490-01 2 141250175 141250175 A G LRP1B Splice_Site p.X3040_splice 0.05 TCGA-94-8490-01 2 141771272 141771272 A G LRP1B Missense_Mutation p.S745P 0.26 benign(0.403) TCGA-94-8490-01 2 152352872 152352872 T C NEB Missense_Mutation p.K8135R 0.11 possibly_damaging(0.486) TCGA-94-8490-01 2 15694227 15694227 C T NBAS Missense_Mutation p.R82H 0.20 deleterious(0.04) probably_damaging(0.98) TCGA-94-8490-01 2 159077216 159077217 - T CCDC148 Frame_Shift_Ins p.Y421Ifs*29 0.22 TCGA-94-8490-01 2 160833857 160833857 T C PLA2R1 Missense_Mutation p.N780S 0.61 tolerated(0.07) possibly_damaging(0.895) TCGA-94-8490-01 2 16085839 16085839 G A MYCN Missense_Mutation p.V339M 0.24 tolerated(0.22) possibly_damaging(0.718) TCGA-94-8490-01 2 162875295 162875295 T G DPP4 Missense_Mutation p.Q455P 0.28 deleterious(0.01) probably_damaging(0.987) TCGA-94-8490-01 2 163070530 163070530 T C FAP Missense_Mutation p.Q307R 0.32 deleterious(0) probably_damaging(0.999) TCGA-94-8490-01 2 163241440 163241440 G T KCNH7 Missense_Mutation p.T907K 0.53 tolerated(0.92) benign(0.003) TCGA-94-8490-01 2 1638057 1638058 - G PXDN Frame_Shift_Ins p.A1454Cfs*42 0.12 TCGA-94-8490-01 2 167134663 167134663 C T SCN9A Missense_Mutation p.R824Q 0.23 deleterious(0.02) possibly_damaging(0.865) TCGA-94-8490-01 2 167168199 167168199 A G SCN9A Missense_Mutation p.I23T 0.28 deleterious(0) possibly_damaging(0.87) TCGA-94-8490-01 2 167760127 167760127 G A XIRP2 Silent p.A45A 0.29 TCGA-94-8490-01 2 169985072 169985073 - T LRP2 3'UTR 0.23 TCGA-94-8490-01 2 170145572 170145572 A G LRP2 Missense_Mutation p.Y336H 0.30 benign(0.005) TCGA-94-8490-01 2 173354323 173354323 A G ITGA6 Silent p.E872E 0.06 TCGA-94-8490-01 2 173435541 173435541 T G PDK1 Missense_Mutation p.L312V 0.34 tolerated(0.16) probably_damaging(0.997) TCGA-94-8490-01 2 174229593 174229593 G A CDCA7 Missense_Mutation p.R257H 0.27 deleterious(0) probably_damaging(0.961) TCGA-94-8490-01 2 176947127 176947127 A G EVX2 Missense_Mutation p.S160P 0.10 tolerated(0.27) benign(0.002) TCGA-94-8490-01 2 17698406 17698407 - T RAD51AP2 Frame_Shift_Ins p.T426Nfs*2 0.21 TCGA-94-8490-01 2 17698736 17698737 - T RAD51AP2 Frame_Shift_Ins p.T316Nfs*13 0.14 TCGA-94-8490-01 2 17698901 17698901 T C RAD51AP2 Missense_Mutation p.Q261R 0.25 tolerated(0.14) benign(0.033) TCGA-94-8490-01 2 176989104 176989104 C T HOXD9 3'UTR 0.40 TCGA-94-8490-01 2 178095475 178095475 A - NFE2L2 3'UTR 0.18 TCGA-94-8490-01 2 179412201 179412201 A T TTN Missense_Mutation p.S31384R 0.30 TCGA-94-8490-01 2 179428713 179428713 A G TTN Silent p.V27382V 0.07 TCGA-94-8490-01 2 179443375 179443375 C T TTN Nonsense_Mutation p.W22764* 0.26 TCGA-94-8490-01 2 179659667 179659667 A C TTN Silent p.V409V 0.51 TCGA-94-8490-01 2 187503135 187503135 G T ITGAV Splice_Site p.X283_splice 0.23 TCGA-94-8490-01 2 189870173 189870173 C A COL3A1 Missense_Mutation p.P1010H 0.09 probably_damaging(0.999) TCGA-94-8490-01 2 191161628 191161629 - T HIBCH Frame_Shift_Ins p.G44Rfs*20 0.35 TCGA-94-8490-01 2 197182026 197182026 G T HECW2 Nonsense_Mutation p.Y802* 0.30 TCGA-94-8490-01 2 201685946 201685946 A C BZW1 Missense_Mutation p.K414N 0.08 tolerated(0.14) benign(0.02) TCGA-94-8490-01 2 201726458 201726458 C T CLK1 Missense_Mutation p.R85H 0.26 tolerated_low_confidence(0.27) benign(0.002) TCGA-94-8490-01 2 210594648 210594648 G C MAP2 Missense_Mutation p.D1744H 0.71 deleterious(0) probably_damaging(0.992) TCGA-94-8490-01 2 211306112 211306112 G A LANCL1 Nonsense_Mutation p.R155* 0.34 TCGA-94-8490-01 2 217541460 217541461 - G IGFBP5 3'UTR 0.33 TCGA-94-8490-01 2 219920033 219920033 C G IHH Missense_Mutation p.G378R 0.73 tolerated(0.18) benign(0.393) TCGA-94-8490-01 2 220113191 220113191 C G STK16 Missense_Mutation p.D276E 0.26 tolerated(0.06) benign(0.077) TCGA-94-8490-01 2 220136247 220136247 C T TUBA4B RNA 0.10 TCGA-94-8490-01 2 220337675 220337675 T C SPEG Missense_Mutation p.L1335P 0.07 probably_damaging(0.963) TCGA-94-8490-01 2 220422150 220422150 C T OBSL1 Silent p.R1327R 0.45 TCGA-94-8490-01 2 224746778 224746778 C T WDFY1 Silent p.R315R 0.35 TCGA-94-8490-01 2 227924270 227924270 C T COL4A4 Missense_Mutation p.G745D 0.40 probably_damaging(0.959) TCGA-94-8490-01 2 230450657 230450657 C A DNER Missense_Mutation p.G255V 0.30 deleterious(0) probably_damaging(0.931) TCGA-94-8490-01 2 231033744 231033744 A G SP110 3'UTR 0.46 TCGA-94-8490-01 2 231308891 231308891 A G SP100 Splice_Site p.X91_splice 0.30 TCGA-94-8490-01 2 233244483 233244483 T C ALPP Missense_Mutation p.V165A 0.33 tolerated(0.06) probably_damaging(1) TCGA-94-8490-01 2 233272697 233272697 C T ALPPL2 Silent p.A206A 0.75 TCGA-94-8490-01 2 233396344 233396344 T A CHRND Missense_Mutation p.V342E 0.05 tolerated(0.35) possibly_damaging(0.678) TCGA-94-8490-01 2 233899533 233899533 G C NEU2 Missense_Mutation p.Q303H 0.77 tolerated(0.17) benign(0.005) TCGA-94-8490-01 2 238483690 238483690 G A RAB17 Missense_Mutation p.A204V 0.27 tolerated(0.13) benign(0.001) TCGA-94-8490-01 2 241404104 241404104 A G GPC1 Missense_Mutation p.T319A 0.33 tolerated(0.24) benign(0.004) TCGA-94-8490-01 2 25965998 25965998 G C ASXL2 Missense_Mutation p.L1070V 0.29 deleterious(0.03) possibly_damaging(0.694) TCGA-94-8490-01 2 27121434 27121434 A G DPYSL5 Missense_Mutation p.T23A 0.29 deleterious(0.03) benign(0.437) TCGA-94-8490-01 2 27147900 27147900 G C DPYSL5 Missense_Mutation p.W136S 0.21 tolerated(0.95) probably_damaging(0.999) TCGA-94-8490-01 2 27551400 27551401 - A GTF3C2 Frame_Shift_Ins p.A731Cfs*26 0.32 TCGA-94-8490-01 2 32726834 32726834 C T BIRC6 Missense_Mutation p.A3029V 0.22 possibly_damaging(0.906) TCGA-94-8490-01 2 33498808 33498808 C T LTBP1 Silent p.Y901Y 0.29 TCGA-94-8490-01 2 33783396 33783397 - C RASGRP3 Frame_Shift_Ins p.A569Sfs*4 0.09 TCGA-94-8490-01 2 36583570 36583570 C T CRIM1 Silent p.C45C 0.27 TCGA-94-8490-01 2 38570462 38570462 C T ATL2 Missense_Mutation p.R104H 0.25 deleterious(0) probably_damaging(0.999) TCGA-94-8490-01 2 39499650 39499650 T C MAP4K3 Missense_Mutation p.M610V 0.24 tolerated(0.23) benign(0.124) TCGA-94-8490-01 2 43818044 43818044 G C THADA Missense_Mutation p.T74S 0.13 tolerated(0.13) benign(0.002) TCGA-94-8490-01 2 44933469 44933469 G A CAMKMT Missense_Mutation p.A161T 0.22 deleterious(0) probably_damaging(0.985) TCGA-94-8490-01 2 48033370 48033370 C T MSH6 Missense_Mutation p.T1225M 0.18 deleterious(0) probably_damaging(1) TCGA-94-8490-01 2 48925845 48925846 - T LHCGR Frame_Shift_Ins p.L259Ifs*25 0.24 TCGA-94-8490-01 2 49295370 49295370 T C FSHR Missense_Mutation p.D71G 0.50 tolerated(0.38) benign(0.002) TCGA-94-8490-01 2 50149109 50149109 T C NRXN1 Silent p.K1539K 0.11 TCGA-94-8490-01 2 50149244 50149245 - T NRXN1 Frame_Shift_Ins p.Y1495Vfs*6 0.23 TCGA-94-8490-01 2 54858739 54858739 T C SPTBN1 Silent p.L1185L 0.23 TCGA-94-8490-01 2 54891725 54891725 G A SPTBN1 Missense_Mutation p.A2186T 0.25 tolerated(0.22) benign(0.028) TCGA-94-8490-01 2 55253228 55253228 T - RTN4 Frame_Shift_Del p.V670Yfs*4 0.25 TCGA-94-8490-01 2 60688454 60688454 G A BCL11A Silent p.G531G 0.32 TCGA-94-8490-01 2 62066612 62066612 A G FAM161A Silent p.C509C 0.24 TCGA-94-8490-01 2 62449841 62449841 G T B3GNT2 Silent p.R162R 0.28 TCGA-94-8490-01 2 71576268 71576268 C G ZNF638 Missense_Mutation p.Q62E 0.27 deleterious(0) probably_damaging(0.986) TCGA-94-8490-01 2 73476181 73476181 T C CCT7 Silent p.H282H 0.21 TCGA-94-8490-01 2 74043112 74043112 A G C2orf78 Missense_Mutation p.K588E 0.25 tolerated(0.08) possibly_damaging(0.557) TCGA-94-8490-01 2 74043263 74043263 A G C2orf78 Missense_Mutation p.H638R 0.09 deleterious(0) probably_damaging(0.999) TCGA-94-8490-01 2 74432959 74432959 G A MTHFD2 Missense_Mutation p.E77K 0.21 deleterious(0.02) possibly_damaging(0.713) TCGA-94-8490-01 2 74653395 74653395 C T RTKN Missense_Mutation p.R556H 0.50 tolerated_low_confidence(0.44) benign(0) TCGA-94-8490-01 2 75900579 75900579 T C GCFC2 Missense_Mutation p.Y627C 0.26 deleterious(0) probably_damaging(0.988) TCGA-94-8490-01 2 80529789 80529789 G A LRRTM1 Missense_Mutation p.P386S 0.27 tolerated(0.6) benign(0.004) TCGA-94-8490-01 2 80530432 80530432 G T LRRTM1 Missense_Mutation p.N171K 0.54 deleterious(0) probably_damaging(0.997) TCGA-94-8490-01 2 86310236 86310236 G A POLR1A Silent p.R262R 0.08 TCGA-94-8490-01 2 86386767 86386768 CA - IMMT Frame_Shift_Del p.V308Dfs*2 0.21 TCGA-94-8490-01 2 88367516 88367516 G C SMYD1 Missense_Mutation p.D45H 0.23 deleterious(0.01) probably_damaging(0.995) TCGA-94-8490-01 2 88383861 88383861 G A SMYD1 Missense_Mutation p.C55Y 0.49 deleterious(0) probably_damaging(1) TCGA-94-8490-01 2 90259791 90259791 C A IGKV1D-8 Silent p.P6P 0.20 TCGA-94-8490-01 2 95756153 95756153 A T MRPS5 Missense_Mutation p.L349H 0.06 deleterious(0) probably_damaging(0.964) TCGA-94-8490-01 2 96795838 96795838 C T ASTL Silent p.T228T 0.22 TCGA-94-8490-01 2 96993330 96993330 T C ITPRIPL1 Missense_Mutation p.W329R 0.07 deleterious(0) probably_damaging(0.999) TCGA-94-8490-01 2 99980849 99980849 G C EIF5B Missense_Mutation p.R418T 0.46 probably_damaging(0.916) TCGA-94-8490-01 3 100053585 100053585 C G NIT2 5'UTR 0.12 TCGA-94-8490-01 3 100962610 100962610 G A IMPG2 Silent p.V855V 0.05 TCGA-94-8490-01 3 101390950 101390950 C T ZBTB11 Missense_Mutation p.G140R 0.20 tolerated_low_confidence(0.1) benign(0.42) TCGA-94-8490-01 3 105378026 105378026 T C CBLB Missense_Mutation p.T913A 0.20 tolerated_low_confidence(0.2) benign(0.237) TCGA-94-8490-01 3 108344703 108344703 A G DZIP3 Silent p.E156E 0.15 TCGA-94-8490-01 3 113003369 113003369 C T BOC Silent p.Y947Y 0.09 TCGA-94-8490-01 3 113379651 113379651 A G KIAA2018 Missense_Mutation p.L293S 0.19 benign(0.004) TCGA-94-8490-01 3 113503564 113503564 G A ATP6V1A Missense_Mutation p.G150R 0.20 deleterious(0) probably_damaging(1) TCGA-94-8490-01 3 113890586 113890586 C A DRD3 Missense_Mutation p.W85L 0.18 tolerated(0.16) probably_damaging(0.923) TCGA-94-8490-01 3 113956128 113956128 C T ZNF80 5'UTR 0.54 TCGA-94-8490-01 3 119246609 119246609 C T CD80 3'UTR 0.15 TCGA-94-8490-01 3 121207488 121207489 - A POLQ Frame_Shift_Ins p.L1430Ffs*5 0.16 TCGA-94-8490-01 3 121238848 121238848 A C POLQ Silent p.L446L 0.17 TCGA-94-8490-01 3 121238875 121238875 A C POLQ Missense_Mutation p.I437M 0.17 deleterious(0) possibly_damaging(0.886) TCGA-94-8490-01 3 121547707 121547707 C T IQCB1 Splice_Site p.X34_splice 0.66 TCGA-94-8490-01 3 123167214 123167215 - C ADCY5 Frame_Shift_Ins p.A60Gfs*27 0.17 TCGA-94-8490-01 3 126201321 126201321 C A UROC1 Missense_Mutation p.R693L 0.19 deleterious(0) possibly_damaging(0.857) TCGA-94-8490-01 3 129177477 129177477 G A IFT122 Missense_Mutation p.V77I 0.22 tolerated(0.19) benign(0.162) TCGA-94-8490-01 3 129249849 129249849 G A RHO Silent p.A164A 0.25 TCGA-94-8490-01 3 13413478 13413478 G A NUP210 Missense_Mutation p.R548C 0.25 deleterious(0) possibly_damaging(0.696) TCGA-94-8490-01 3 134851557 134851557 C T EPHB1 Silent p.S321S 0.21 TCGA-94-8490-01 3 138219650 138219650 T G CEP70 Missense_Mutation p.N432T 0.16 tolerated(0.27) benign(0.392) TCGA-94-8490-01 3 141697497 141697497 A G TFDP2 Silent p.N128N 0.16 TCGA-94-8490-01 3 142840832 142840832 C T CHST2 Silent p.L392L 0.17 TCGA-94-8490-01 3 145917686 145917686 C T PLSCR4 Missense_Mutation p.D180N 0.23 deleterious(0.03) probably_damaging(0.989) TCGA-94-8490-01 3 147114065 147114065 C A ZIC4 Missense_Mutation p.A138S 0.70 tolerated(0.14) benign(0.166) TCGA-94-8490-01 3 147128700 147128700 T C ZIC1 Silent p.S267S 0.23 TCGA-94-8490-01 3 14755613 14755613 G C C3orf20 Silent p.L420L 0.61 TCGA-94-8490-01 3 148858878 148858879 - A HPS3 Frame_Shift_Ins p.S265Kfs*2 0.18 TCGA-94-8490-01 3 150931859 150931859 T G P2RY14 Silent p.S82S 0.17 TCGA-94-8490-01 3 152058374 152058374 T C TMEM14E Missense_Mutation p.Y107C 0.20 possibly_damaging(0.759) TCGA-94-8490-01 3 15297533 15297533 A G SH3BP5 3'UTR 0.61 TCGA-94-8490-01 3 153840215 153840216 - C ARHGEF26 Frame_Shift_Ins p.R148Afs*4 0.23 TCGA-94-8490-01 3 154147424 154147424 A T GPR149 5'UTR 0.05 TCGA-94-8490-01 3 155198931 155198931 T A PLCH1 Silent p.A1636A 0.69 TCGA-94-8490-01 3 155200538 155200538 C G PLCH1 Missense_Mutation p.D1101H 0.18 tolerated_low_confidence(0.13) benign(0.003) TCGA-94-8490-01 3 157178109 157178109 G A VEPH1 Silent p.I130I 0.23 TCGA-94-8490-01 3 157841717 157841717 G A RSRC1 Missense_Mutation p.R86H 0.17 tolerated_low_confidence(0.13) unknown(0) TCGA-94-8490-01 3 158262078 158262078 A T RSRC1 3'UTR 0.62 TCGA-94-8490-01 3 158315990 158315990 C T MLF1 Missense_Mutation p.P165L 0.06 deleterious(0.01) probably_damaging(0.981) TCGA-94-8490-01 3 159482233 159482233 A G IQCJ-SCHIP1 Missense_Mutation p.D98G 0.34 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-94-8490-01 3 160037673 160037673 A G IFT80 Missense_Mutation p.S278P 0.23 deleterious(0) probably_damaging(0.999) TCGA-94-8490-01 3 161221109 161221109 T C OTOL1 Silent p.S271S 0.74 TCGA-94-8490-01 3 164777074 164777074 G T SI Missense_Mutation p.T387N 0.17 tolerated(0.33) benign(0.147) TCGA-94-8490-01 3 164907004 164907004 A G SLITRK3 Missense_Mutation p.F539L 0.06 tolerated(0.2) benign(0.34) TCGA-94-8490-01 3 165548397 165548397 T C BCHE Missense_Mutation p.Y142C 0.19 deleterious(0) probably_damaging(1) TCGA-94-8490-01 3 167728063 167728063 T C GOLIM4 Silent p.E695E 0.05 TCGA-94-8490-01 3 168807862 168807862 T C MECOM Silent p.L986L 0.21 TCGA-94-8490-01 3 168807948 168807950 CTT - MECOM In_Frame_Del p.E957del 0.20 TCGA-94-8490-01 3 169526470 169526470 A C LRRC34 Missense_Mutation p.I68S 0.24 tolerated(0.4) benign(0.205) TCGA-94-8490-01 3 170216619 170216619 A G SLC7A14 Missense_Mutation p.V199A 0.22 deleterious(0.02) possibly_damaging(0.81) TCGA-94-8490-01 3 180327470 180327470 G A TTC14 Missense_Mutation p.D485N 0.20 deleterious(0.05) unknown(0) TCGA-94-8490-01 3 182775135 182775135 C G MCCC1 Missense_Mutation p.Q279H 0.19 deleterious(0) probably_damaging(1) TCGA-94-8490-01 3 183907486 183907486 C T ABCF3 Missense_Mutation p.R419W 0.21 deleterious(0) probably_damaging(0.994) TCGA-94-8490-01 3 184090201 184090201 G C THPO 3'UTR 0.22 TCGA-94-8490-01 3 188584049 188584049 C A LPP Missense_Mutation p.T491N 0.19 deleterious(0.02) probably_damaging(1) TCGA-94-8490-01 3 190362110 190362110 T G IL1RAP Missense_Mutation p.I375M 0.20 deleterious(0.01) probably_damaging(0.981) TCGA-94-8490-01 3 191098622 191098622 C T CCDC50 Silent p.I381I 0.14 TCGA-94-8490-01 3 193854201 193854201 C G HES1 Missense_Mutation p.S11W 0.14 deleterious_low_confidence(0) possibly_damaging(0.889) TCGA-94-8490-01 3 194159603 194159603 A T ATP13A3 Silent p.P603P 0.05 TCGA-94-8490-01 3 194407548 194407548 C A FAM43A 5'UTR 0.09 TCGA-94-8490-01 3 196199251 196199251 A G RNF168 Silent p.I385I 0.14 TCGA-94-8490-01 3 196528822 196528822 G A PAK2 Missense_Mutation p.R71Q 0.19 deleterious(0.01) possibly_damaging(0.656) TCGA-94-8490-01 3 196554178 196554178 A G PAK2 Missense_Mutation p.R488G 0.17 deleterious(0) probably_damaging(1) TCGA-94-8490-01 3 197598289 197598289 C T LRCH3 Nonsense_Mutation p.R696* 0.19 TCGA-94-8490-01 3 38411602 38411602 T A XYLB Silent p.L234L 0.40 TCGA-94-8490-01 3 38738932 38738932 C T SCN10A Missense_Mutation p.G1927S 0.05 tolerated(0.2) possibly_damaging(0.802) TCGA-94-8490-01 3 38802218 38802218 G A SCN10A Nonsense_Mutation p.R302* 0.07 TCGA-94-8490-01 3 44882662 44882662 T G KIF15 Missense_Mutation p.L1173V 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-94-8490-01 3 45500367 45500367 G A LARS2 Missense_Mutation p.A247T 0.58 tolerated(0.16) benign(0.06) TCGA-94-8490-01 3 47371522 47371522 C A KLHL18 Missense_Mutation p.S161R 0.62 tolerated(0.52) benign(0.009) TCGA-94-8490-01 3 47449925 47449925 C T PTPN23 Silent p.C425C 0.56 TCGA-94-8490-01 3 48481724 48481724 T C TMA7 Splice_Site p.X6_splice 0.68 TCGA-94-8490-01 3 48508956 48508956 T C TREX1 Missense_Mutation p.V356A 0.08 deleterious_low_confidence(0) benign(0.229) TCGA-94-8490-01 3 49136571 49136571 A G QARS Missense_Mutation p.V577A 0.04 deleterious(0) possibly_damaging(0.791) TCGA-94-8490-01 3 49137261 49137261 T C QARS Missense_Mutation p.T441A 0.24 tolerated(0.19) probably_damaging(0.999) TCGA-94-8490-01 3 49149360 49149360 G A USP19 Silent p.L961L 0.12 TCGA-94-8490-01 3 49395350 49395350 G A GPX1 Intron 0.14 TCGA-94-8490-01 3 49698725 49698725 G A BSN Silent p.S3149S 0.58 TCGA-94-8490-01 3 52542357 52542358 - A STAB1 Frame_Shift_Ins p.C740Mfs*9 0.12 TCGA-94-8490-01 3 87313515 87313515 G T POU1F1 Missense_Mutation p.P147Q 0.49 tolerated(0.07) benign(0.267) TCGA-94-8490-01 3 87313516 87313516 G T POU1F1 Missense_Mutation p.P147T 0.48 tolerated(0.06) benign(0.073) TCGA-94-8490-01 3 93733336 93733336 A G STX19 Missense_Mutation p.Y260H 0.16 deleterious(0) probably_damaging(0.993) TCGA-94-8490-01 3 97467438 97467438 A G EPHA6 Missense_Mutation p.R1096G 0.32 tolerated(0.39) possibly_damaging(0.763) TCGA-94-8490-01 3 97869064 97869064 A G OR5H14 Missense_Mutation p.T279A 0.25 deleterious(0.01) benign(0.443) TCGA-94-8490-01 3 98251234 98251234 C A GPR15 Nonsense_Mutation p.C119* 0.08 TCGA-94-8490-01 4 106158355 106158355 A G TET2 Missense_Mutation p.T1086A 0.44 tolerated(0.42) benign(0.002) TCGA-94-8490-01 4 108930946 108930946 T C HADH Missense_Mutation p.L55S 0.32 deleterious(0) probably_damaging(0.944) TCGA-94-8490-01 4 110448515 110448515 A G SEC24B Silent p.P1001P 0.34 TCGA-94-8490-01 4 113568482 113568482 T C LARP7 Silent p.S265S 0.45 TCGA-94-8490-01 4 114279140 114279140 G A ANK2 Silent p.R3122R 0.35 TCGA-94-8490-01 4 115766993 115766993 A G NDST4 Missense_Mutation p.Y701H 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-94-8490-01 4 119459039 119459039 T A CEP170P1 RNA 0.31 TCGA-94-8490-01 4 120527946 120527946 C T PDE5A Missense_Mutation p.C220Y 0.32 tolerated(0.15) benign(0.374) TCGA-94-8490-01 4 123210331 123210331 A G KIAA1109 Silent p.V3124V 0.41 TCGA-94-8490-01 4 125592432 125592432 C T ANKRD50 Missense_Mutation p.G667D 0.36 deleterious(0.02) probably_damaging(0.996) TCGA-94-8490-01 4 128949643 128949643 A T C4orf29 Missense_Mutation p.K238I 0.44 tolerated(0.06) probably_damaging(0.936) TCGA-94-8490-01 4 129869722 129869722 A G SCLT1 Missense_Mutation p.C408R 0.34 deleterious(0) probably_damaging(0.961) TCGA-94-8490-01 4 141484490 141484490 A G UCP1 Silent p.L170L 0.09 TCGA-94-8490-01 4 145567903 145567903 G A HHIP Missense_Mutation p.G26R 0.11 deleterious_low_confidence(0) benign(0.046) TCGA-94-8490-01 4 164272092 164272092 C A NPY5R Missense_Mutation p.P223T 0.71 deleterious(0) probably_damaging(1) TCGA-94-8490-01 4 169343053 169343053 A G DDX60L Missense_Mutation p.L751P 0.05 deleterious(0.01) possibly_damaging(0.739) TCGA-94-8490-01 4 169392916 169392916 G A DDX60L Silent p.F82F 0.46 TCGA-94-8490-01 4 175899313 175899313 A - ADAM29 3'UTR 0.54 TCGA-94-8490-01 4 184240775 184240775 G C CLDN22 Nonsense_Mutation p.Y199* 0.07 TCGA-94-8490-01 4 187532621 187532621 C - FAT1 Frame_Shift_Del p.D3258Ifs*12 0.45 TCGA-94-8490-01 4 189068523 189068523 C G TRIML1 Silent p.V468V 0.59 TCGA-94-8490-01 4 20543074 20543074 A G SLIT2 Splice_Site p.X659_splice 0.72 TCGA-94-8490-01 4 27009164 27009164 G A STIM2 Missense_Mutation p.A331T 0.21 deleterious(0) possibly_damaging(0.459) TCGA-94-8490-01 4 3443817 3443817 C T HGFAC Missense_Mutation p.P30L 0.61 tolerated_low_confidence(0.05) benign(0.005) TCGA-94-8490-01 4 47850161 47850161 T C NFXL1 3'UTR 0.21 TCGA-94-8490-01 4 48990560 48990560 T A CWH43 Missense_Mutation p.L37Q 0.40 deleterious(0) probably_damaging(0.976) TCGA-94-8490-01 4 56236433 56236433 C T SRD5A3 3'UTR 0.37 TCGA-94-8490-01 4 56458281 56458281 C T PDCL2 5'UTR 0.34 TCGA-94-8490-01 4 57843775 57843775 G T NOA1 5'UTR 0.39 TCGA-94-8490-01 4 6595041 6595041 C T MAN2B2 Silent p.A274A 0.55 TCGA-94-8490-01 4 66356119 66356119 C A EPHA5 Missense_Mutation p.V460L 0.37 tolerated(0.08) benign(0.002) TCGA-94-8490-01 4 69520885 69520885 C T UGT2B15 Missense_Mutation p.D341N 0.26 tolerated(0.11) benign(0.007) TCGA-94-8490-01 4 7043260 7043260 G A CCDC96 Missense_Mutation p.A469V 0.54 tolerated(0.06) possibly_damaging(0.74) TCGA-94-8490-01 4 71099775 71099775 G T FDCSP Silent p.V43V 0.37 TCGA-94-8490-01 4 72634130 72634130 C A GC Missense_Mutation p.R69I 0.27 deleterious(0) probably_damaging(0.976) TCGA-94-8490-01 4 73984437 73984437 T C ANKRD17 Missense_Mutation p.K1386E 0.08 possibly_damaging(0.868) TCGA-94-8490-01 4 74316449 74316449 A G AFP Silent p.L469L 0.31 TCGA-94-8490-01 4 76924774 76924774 A G CXCL9 Missense_Mutation p.S119P 0.28 tolerated(1) unknown(0) TCGA-94-8490-01 4 77003167 77003167 C A ART3 Missense_Mutation p.P87H 0.37 deleterious(0) probably_damaging(1) TCGA-94-8490-01 4 81123314 81123314 T C PRDM8 Missense_Mutation p.L233P 0.29 deleterious_low_confidence(0.01) benign(0.027) TCGA-94-8490-01 4 84342736 84342736 A T HELQ Missense_Mutation p.C977S 0.21 tolerated(0.33) benign(0.006) TCGA-94-8490-01 4 84391525 84391525 G A FAM175A Missense_Mutation p.R103C 0.33 deleterious(0) probably_damaging(1) TCGA-94-8490-01 5 111500543 111500543 A G EPB41L4A 3'UTR 0.50 TCGA-94-8490-01 5 131667504 131667504 G T SLC22A4 Missense_Mutation p.R336L 0.58 tolerated(0.53) benign(0.016) TCGA-94-8490-01 5 139947067 139947067 T C SLC35A4 Missense_Mutation p.Y105H 0.62 tolerated(0.7) benign(0.006) TCGA-94-8490-01 5 140229391 140229391 C A PCDHA9 Silent p.A437A 0.62 TCGA-94-8490-01 5 140474903 140474903 A G PCDHB2 Missense_Mutation p.N177D 0.14 deleterious_low_confidence(0.01) probably_damaging(0.955) TCGA-94-8490-01 5 140476822 140476823 - T PCDHB2 3'UTR 0.26 TCGA-94-8490-01 5 140552367 140552367 G A PCDHB7 5'UTR 0.51 TCGA-94-8490-01 5 140563101 140563101 G T PCDHB16 Missense_Mutation p.D323Y 0.61 deleterious_low_confidence(0) probably_damaging(1) TCGA-94-8490-01 5 140725840 140725840 G T PCDHGA3 Missense_Mutation p.R747L 0.59 deleterious_low_confidence(0) possibly_damaging(0.856) TCGA-94-8490-01 5 140773674 140773674 C T PCDHGA8 Silent p.L432L 0.56 TCGA-94-8490-01 5 145651167 145651167 A T RBM27 Missense_Mutation p.H973L 0.40 deleterious(0) probably_damaging(0.996) TCGA-94-8490-01 5 147774337 147774347 ACAATGGGGCC - FBXO38 Missense_Mutation 0.47 TCGA-94-8490-01 5 147807323 147807324 - G FBXO38 Intron 0.35 TCGA-94-8490-01 5 150911469 150911469 C T FAT2 Missense_Mutation p.A3164T 0.53 benign(0.036) TCGA-94-8490-01 5 161322874 161322874 G T GABRA1 Missense_Mutation p.K353N 0.60 tolerated(0.18) probably_damaging(0.995) TCGA-94-8490-01 5 16676162 16676162 C A MYO10 Silent p.P1548P 0.07 TCGA-94-8490-01 5 16763639 16763639 T C MYO10 Missense_Mutation p.E482G 0.29 tolerated(0.14) possibly_damaging(0.451) TCGA-94-8490-01 5 176831502 176831502 G A F12 Silent p.C266C 0.29 TCGA-94-8490-01 5 179044925 179044925 A G HNRNPH1 Missense_Mutation p.Y266H 0.64 tolerated(0.4) probably_damaging(0.956) TCGA-94-8490-01 5 179765493 179765493 C T GFPT2 Missense_Mutation p.G39S 0.65 deleterious(0) probably_damaging(0.925) TCGA-94-8490-01 5 2749658 2749658 A G IRX2 Missense_Mutation p.F165L 0.33 deleterious(0) probably_damaging(0.992) TCGA-94-8490-01 5 31552884 31552884 A G C5orf22 Missense_Mutation p.S402G 0.31 deleterious(0) probably_damaging(0.96) TCGA-94-8490-01 5 34936297 34936297 G C DNAJC21 Missense_Mutation p.E122Q 0.75 deleterious(0.01) probably_damaging(0.994) TCGA-94-8490-01 5 35792442 35792442 G C SPEF2 Missense_Mutation p.G1483A 0.38 tolerated(0.08) probably_damaging(0.998) TCGA-94-8490-01 5 35876188 35876188 C T IL7R Missense_Mutation p.T327M 0.42 deleterious(0.04) benign(0.03) TCGA-94-8490-01 5 36049470 36049470 T C UGT3A2 Missense_Mutation p.S122G 0.42 deleterious(0.03) possibly_damaging(0.803) TCGA-94-8490-01 5 42806948 42806948 A G SEPP1 Intron 0.43 TCGA-94-8490-01 5 43139319 43139319 A T ZNF131 Missense_Mutation p.K93N 0.29 tolerated(0.26) probably_damaging(0.997) TCGA-94-8490-01 5 50091048 50091048 A G PARP8 Missense_Mutation p.R409G 0.10 tolerated_low_confidence(0.06) benign(0.108) TCGA-94-8490-01 5 54565263 54565263 A G DHX29 Missense_Mutation p.I1091T 0.09 deleterious(0) probably_damaging(0.988) TCGA-94-8490-01 5 5463802 5463802 A T KIAA0947 Missense_Mutation p.Q1452L 0.31 tolerated(0.31) benign(0.067) TCGA-94-8490-01 5 6750518 6750518 C G PAPD7 Missense_Mutation p.P338A 0.70 deleterious(0.01) benign(0.004) TCGA-94-8490-01 5 70805418 70805418 A G BDP1 Silent p.V833V 0.09 TCGA-94-8490-01 5 72178929 72178929 A G TNPO1 Silent p.E340E 0.57 TCGA-94-8490-01 5 76249866 76249866 T C CRHBP Missense_Mutation p.M63T 0.52 deleterious(0.01) benign(0.243) TCGA-94-8490-01 5 7706884 7706884 T C ADCY2 Silent p.D379D 0.40 TCGA-94-8490-01 5 78752757 78752757 A G HOMER1 Silent p.H30H 0.16 TCGA-94-8490-01 5 80546971 80546971 A T CKMT2 Missense_Mutation p.K7M 0.67 deleterious_low_confidence(0) possibly_damaging(0.466) TCGA-94-8490-01 5 82937415 82937415 C G HAPLN1 Missense_Mutation p.R322T 0.65 deleterious(0) probably_damaging(0.993) TCGA-94-8490-01 5 912082 912082 T G TRIP13 Missense_Mutation p.Y331D 0.21 deleterious(0.01) possibly_damaging(0.832) TCGA-94-8490-01 5 9154674 9154674 A G SEMA5A Silent p.S469S 0.06 TCGA-94-8490-01 6 100895230 100895230 C T SIM1 Nonsense_Mutation p.W304* 0.08 TCGA-94-8490-01 6 102250305 102250305 C A GRIK2 Missense_Mutation p.L399I 0.22 tolerated(0.13) benign(0.438) TCGA-94-8490-01 6 105280929 105280929 G A HACE1 Silent p.N174N 0.35 TCGA-94-8490-01 6 106973206 106973206 G A AIM1 Missense_Mutation p.D1045N 0.39 deleterious(0.03) possibly_damaging(0.712) TCGA-94-8490-01 6 11190465 11190465 G A NEDD9 Missense_Mutation p.T546I 0.23 deleterious(0) probably_damaging(0.994) TCGA-94-8490-01 6 112452257 112452257 T C LAMA4 Missense_Mutation p.D1294G 0.09 deleterious(0.03) benign(0.012) TCGA-94-8490-01 6 132891772 132891772 T C TAAR6 Silent p.F104F 0.05 TCGA-94-8490-01 6 136172962 136172962 C T PDE7B 5'UTR 0.21 TCGA-94-8490-01 6 13638152 13638152 T C RANBP9 Missense_Mutation p.K521E 0.26 tolerated(0.12) probably_damaging(0.995) TCGA-94-8490-01 6 146256292 146256292 A T SHPRH Missense_Mutation p.I914K 0.39 deleterious(0) probably_damaging(0.995) TCGA-94-8490-01 6 151686632 151686633 - T ZBTB2 3'UTR 0.08 TCGA-94-8490-01 6 152540184 152540184 A G SYNE1 Missense_Mutation p.L7333S 0.37 benign(0.126) TCGA-94-8490-01 6 152646257 152646257 C G SYNE1 Missense_Mutation p.E5207Q 0.39 benign(0.029) TCGA-94-8490-01 6 152658021 152658021 A T SYNE1 Silent p.S4161S 0.30 TCGA-94-8490-01 6 158049462 158049462 C G ZDHHC14 Missense_Mutation p.S216C 0.34 tolerated(0.06) possibly_damaging(0.737) TCGA-94-8490-01 6 158049463 158049463 T A ZDHHC14 Silent p.S216S 0.34 TCGA-94-8490-01 6 158516928 158516928 C T SYNJ2 Silent p.P1341P 0.13 TCGA-94-8490-01 6 159672470 159672470 T C FNDC1 Silent p.H1657H 0.10 TCGA-94-8490-01 6 160188185 160188185 T G ACAT2 Missense_Mutation p.I113M 0.42 deleterious(0) probably_damaging(0.948) TCGA-94-8490-01 6 161470599 161470599 C T MAP3K4 Missense_Mutation p.P432L 0.37 deleterious(0) probably_damaging(0.999) TCGA-94-8490-01 6 162683770 162683770 C A PARK2 Missense_Mutation p.V67F 0.07 deleterious(0) possibly_damaging(0.905) TCGA-94-8490-01 6 165715291 165715291 T A C6orf118 Missense_Mutation p.R174W 0.39 deleterious(0) probably_damaging(0.997) TCGA-94-8490-01 6 17606239 17606239 T A FAM8A1 Silent p.I364I 0.28 TCGA-94-8490-01 6 17777512 17777512 T G KIF13A Missense_Mutation p.H1389P 0.32 tolerated(0.05) possibly_damaging(0.493) TCGA-94-8490-01 6 18122015 18122015 C - NHLRC1 Frame_Shift_Del p.A275Pfs*20 0.21 TCGA-94-8490-01 6 20481454 20481455 - A E2F3 Frame_Shift_Ins p.T177Nfs*4 0.22 TCGA-94-8490-01 6 24523078 24523078 G A ALDH5A1 Silent p.K379K 0.12 TCGA-94-8490-01 6 24559266 24559266 G C KIAA0319 Missense_Mutation p.F903L 0.33 deleterious(0) possibly_damaging(0.495) TCGA-94-8490-01 6 26033460 26033460 G T HIST1H2AB Missense_Mutation p.Q113K 0.39 deleterious_low_confidence(0.02) benign(0.044) TCGA-94-8490-01 6 26199818 26199819 - A HIST1H2BF Frame_Shift_Ins p.S15Lfs*14 0.40 TCGA-94-8490-01 6 26405617 26405617 G T BTN3A1 5'UTR 0.50 TCGA-94-8490-01 6 26468923 26468923 A G BTN2A1 3'UTR 0.30 TCGA-94-8490-01 6 27419171 27419171 C A ZNF184 Nonsense_Mutation p.E723* 0.37 TCGA-94-8490-01 6 29408497 29408497 G T OR10C1 Missense_Mutation p.K235N 0.12 deleterious(0) probably_damaging(0.939) TCGA-94-8490-01 6 30557633 30557633 G A ABCF1 Silent p.E705E 0.13 TCGA-94-8490-01 6 31656498 31656498 A G ABHD16A Splice_Site p.X417_splice 0.08 TCGA-94-8490-01 6 32147855 32147855 T - RNF5 Frame_Shift_Del p.F134Sfs*64 0.13 TCGA-94-8490-01 6 33283416 33283416 G C ZBTB22 Missense_Mutation p.I426M 0.23 deleterious(0.01) benign(0.392) TCGA-94-8490-01 6 33763297 33763297 T G MLN Missense_Mutation p.E107A 0.50 deleterious(0.01) possibly_damaging(0.519) TCGA-94-8490-01 6 33768943 33768943 T C MLN 5'UTR 0.38 TCGA-94-8490-01 6 34101007 34101007 G T GRM4 Silent p.I89I 0.38 TCGA-94-8490-01 6 34846380 34846381 - T TAF11 Frame_Shift_Ins p.I208Nfs*26 0.24 TCGA-94-8490-01 6 35762910 35762910 T C CLPS 3'UTR 0.18 TCGA-94-8490-01 6 36168431 36168431 C T BRPF3 Missense_Mutation p.S111F 0.11 deleterious(0.01) possibly_damaging(0.83) TCGA-94-8490-01 6 37442313 37442313 A G CMTR1 Missense_Mutation p.Y612C 0.44 deleterious(0) probably_damaging(0.979) TCGA-94-8490-01 6 38850811 38850811 A G DNAH8 Missense_Mutation p.I2445V 0.37 possibly_damaging(0.498) TCGA-94-8490-01 6 41555172 41555172 C T FOXP4 Missense_Mutation p.P265L 0.39 deleterious(0.03) benign(0.097) TCGA-94-8490-01 6 42236486 42236486 C A TRERF1 Missense_Mutation p.Q281H 0.25 tolerated_low_confidence(0.08) possibly_damaging(0.585) TCGA-94-8490-01 6 43402489 43402489 C T ABCC10 Missense_Mutation p.A504V 0.10 deleterious(0) possibly_damaging(0.529) TCGA-94-8490-01 6 46658052 46658052 A G TDRD6 Silent p.V729V 0.33 TCGA-94-8490-01 6 53385676 53385676 C G GCLC Missense_Mutation p.E116Q 0.12 tolerated(0.18) benign(0.021) TCGA-94-8490-01 6 54805454 54805454 G T FAM83B Missense_Mutation p.G562V 0.39 deleterious(0.04) benign(0.28) TCGA-94-8490-01 6 55113440 55113440 G T HCRTR2 Missense_Mutation p.C76F 0.37 deleterious(0) probably_damaging(0.994) TCGA-94-8490-01 6 56515973 56515973 G A DST Silent p.Y217Y 0.32 TCGA-94-8490-01 6 6266926 6266926 A G F13A1 Missense_Mutation p.S146P 0.31 deleterious(0.03) probably_damaging(0.909) TCGA-94-8490-01 6 64395831 64395831 A G PHF3 Intron 0.33 TCGA-94-8490-01 6 64423182 64423182 C G PHF3 Missense_Mutation p.P1900A 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-94-8490-01 6 66205168 66205168 T C EYS Missense_Mutation p.T46A 0.37 tolerated_low_confidence(0.15) benign(0.074) TCGA-94-8490-01 6 70070877 70070877 T A BAI3 Missense_Mutation p.S1238T 0.11 tolerated(0.08) possibly_damaging(0.829) TCGA-94-8490-01 6 7230079 7230080 - G RREB1 Frame_Shift_Ins p.A584Gfs*8 0.15 TCGA-94-8490-01 6 74176071 74176071 A G MTO1 Silent p.G119G 0.34 TCGA-94-8490-01 6 80635973 80635973 G A ELOVL4 Missense_Mutation p.R76C 0.30 deleterious(0) probably_damaging(0.985) TCGA-94-8490-01 6 83075772 83075772 T C TPBG Missense_Mutation p.L365P 0.07 deleterious(0) probably_damaging(0.99) TCGA-94-8490-01 6 83898418 83898418 T G PGM3 Missense_Mutation p.M130L 0.06 tolerated(1) benign(0.001) TCGA-94-8490-01 6 84317450 84317450 T C SNAP91 Silent p.L330L 0.33 TCGA-94-8490-01 6 84910624 84910624 C A KIAA1009 Splice_Site p.X240_splice 0.41 TCGA-94-8490-01 6 88299905 88299905 T A ORC3 Missense_Mutation p.S7T 0.08 deleterious(0) probably_damaging(0.967) TCGA-94-8490-01 6 90333126 90333126 T C ANKRD6 Intron 0.16 TCGA-94-8490-01 6 90426453 90426453 C T MDN1 Missense_Mutation p.G2220D 0.10 probably_damaging(0.998) TCGA-94-8490-01 6 97246257 97246258 - A GPR63 3'UTR 0.33 TCGA-94-8490-01 6 97562234 97562234 T A KLHL32 Nonsense_Mutation p.Y401* 0.15 TCGA-94-8490-01 6 99771523 99771523 C A FAXC Missense_Mutation p.W207L 0.37 tolerated(0.05) benign(0.196) TCGA-94-8490-01 7 100225722 100225722 T C TFR2 Missense_Mutation p.Y504C 0.05 deleterious(0) probably_damaging(1) TCGA-94-8490-01 7 100238762 100238762 C A TFR2 Silent p.G41G 0.16 TCGA-94-8490-01 7 100732241 100732241 T C TRIM56 Missense_Mutation p.C550R 0.06 deleterious(0.04) probably_damaging(0.952) TCGA-94-8490-01 7 102098159 102098159 C T ALKBH4 Silent p.A197A 0.48 TCGA-94-8490-01 7 102912257 102912257 C G DPY19L2P2 RNA 0.41 TCGA-94-8490-01 7 102953038 102953038 T C DNAJC2 Missense_Mutation p.N615S 0.07 tolerated_low_confidence(0.07) benign(0.03) TCGA-94-8490-01 7 102964992 102964992 T - DNAJC2 Frame_Shift_Del p.N197Mfs*8 0.31 TCGA-94-8490-01 7 103363587 103363587 C A RELN Missense_Mutation p.G269W 0.33 deleterious(0) possibly_damaging(0.707) TCGA-94-8490-01 7 107756460 107756460 T C LAMB4 Missense_Mutation p.S61G 0.37 tolerated(0.84) benign(0.015) TCGA-94-8490-01 7 111927108 111927108 A G ZNF277 Missense_Mutation p.K91R 0.36 tolerated(0.11) benign(0.049) TCGA-94-8490-01 7 111936325 111936325 G C ZNF277 Missense_Mutation p.E142Q 0.29 deleterious(0) probably_damaging(0.927) TCGA-94-8490-01 7 112724410 112724410 T C GPR85 Missense_Mutation p.I123V 0.39 tolerated(0.28) benign(0.371) TCGA-94-8490-01 7 114304424 114304424 A C FOXP2 Missense_Mutation p.N671H 0.41 deleterious(0.04) benign(0.001) TCGA-94-8490-01 7 116829385 116829385 A G ST7 Silent p.L363L 0.19 TCGA-94-8490-01 7 117232452 117232452 A T CFTR Missense_Mutation p.Q744L 0.33 tolerated(0.07) benign(0.007) TCGA-94-8490-01 7 117879987 117879987 G T ANKRD7 Missense_Mutation p.S246I 0.38 deleterious(0.01) benign(0.168) TCGA-94-8490-01 7 123593876 123593876 C A SPAM1 Silent p.T84T 0.32 TCGA-94-8490-01 7 128470847 128470847 C T FLNC Silent p.C52C 0.07 TCGA-94-8490-01 7 131878935 131878935 G A PLXNA4 Silent p.I914I 0.30 TCGA-94-8490-01 7 133979514 133979514 C T SLC35B4 3'UTR 0.44 TCGA-94-8490-01 7 137255970 137255970 C A DGKI Missense_Mutation p.R633L 0.34 deleterious(0) probably_damaging(0.981) TCGA-94-8490-01 7 140273614 140273614 T C DENND2A Missense_Mutation p.I480M 0.33 deleterious(0) possibly_damaging(0.808) TCGA-94-8490-01 7 14216518 14216518 G T DGKB Missense_Mutation p.S751R 0.30 tolerated(0.31) benign(0.02) TCGA-94-8490-01 7 142569589 142569589 T C TRPV6 Silent p.S683S 0.14 TCGA-94-8490-01 7 142880967 142880967 G T TAS2R39 Missense_Mutation p.W152C 0.36 deleterious(0.01) probably_damaging(0.962) TCGA-94-8490-01 7 143000958 143000958 A G CASP2 Missense_Mutation p.K350R 0.36 tolerated(0.82) benign(0.006) TCGA-94-8490-01 7 143510220 143510220 C T RP11-61L23.2 RNA 0.27 TCGA-94-8490-01 7 143882526 143882526 A G CTAGE4 Missense_Mutation p.S644G 0.12 tolerated(0.08) benign(0.22) TCGA-94-8490-01 7 144096524 144096524 A G NOBOX Silent p.P402P 0.38 TCGA-94-8490-01 7 148700843 148700843 G A PDIA4 3'UTR 0.40 TCGA-94-8490-01 7 150094012 150094012 C T ZNF775 Missense_Mutation p.P148L 0.28 deleterious(0) probably_damaging(0.999) TCGA-94-8490-01 7 150761690 150761690 C - SLC4A2 Frame_Shift_Del p.Q100Rfs*145 0.30 TCGA-94-8490-01 7 150767286 150767286 G A SLC4A2 Silent p.K434K 0.36 TCGA-94-8490-01 7 150864160 150864160 T C GBX1 Missense_Mutation p.K159R 0.32 tolerated(0.21) benign(0.001) TCGA-94-8490-01 7 152132793 152132793 G A KMT2C Missense_Mutation p.P27S 0.56 probably_damaging(0.968) TCGA-94-8490-01 7 156469109 156469109 G A RNF32 Intron 0.41 TCGA-94-8490-01 7 158704353 158704353 A - WDR60 Frame_Shift_Del p.N527Ifs*23 0.38 TCGA-94-8490-01 7 16714085 16714086 - T BZW2 Frame_Shift_Ins p.Q36Hfs*4 0.11 TCGA-94-8490-01 7 17915116 17915116 G - SNX13 Frame_Shift_Del p.D219Mfs*6 0.09 TCGA-94-8490-01 7 17931181 17931181 T C SNX13 Silent p.E102E 0.12 TCGA-94-8490-01 7 17931209 17931209 C G SNX13 Missense_Mutation p.R93T 0.12 deleterious(0) probably_damaging(0.972) TCGA-94-8490-01 7 19761757 19761757 C G TMEM196 Missense_Mutation p.E154Q 0.10 tolerated(0.32) possibly_damaging(0.607) TCGA-94-8490-01 7 20725454 20725454 A G ABCB5 Missense_Mutation p.K669E 0.29 tolerated(0.85) benign(0.001) TCGA-94-8490-01 7 23000911 23000911 T A FAM126A Missense_Mutation p.K258N 0.33 deleterious(0.01) possibly_damaging(0.784) TCGA-94-8490-01 7 31692355 31692355 C T CCDC129 Intron 0.37 TCGA-94-8490-01 7 35673382 35673382 C G HERPUD2 Missense_Mutation p.G380A 0.35 deleterious(0.01) benign(0.41) TCGA-94-8490-01 7 36396990 36396990 A G KIAA0895 Missense_Mutation p.Y130H 0.35 tolerated_low_confidence(0.67) benign(0.001) TCGA-94-8490-01 7 38389239 38389239 C G TRGV5 Missense_Mutation p.G24A 0.34 tolerated(0.09) probably_damaging(0.948) TCGA-94-8490-01 7 41729289 41729289 C G INHBA Missense_Mutation p.D414H 0.39 deleterious(0) probably_damaging(1) TCGA-94-8490-01 7 43484923 43484923 C T HECW1 Missense_Mutation p.R718C 0.40 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-94-8490-01 7 43664330 43664330 A G STK17A Silent p.L378L 0.06 TCGA-94-8490-01 7 44080477 44080477 C A DBNL 5'Flank 0.26 TCGA-94-8490-01 7 51095554 51095554 G A COBL Missense_Mutation p.T1080I 0.09 tolerated(0.09) benign(0.408) TCGA-94-8490-01 7 5428827 5428827 C T TNRC18 Missense_Mutation p.A210T 0.62 benign(0.006) TCGA-94-8490-01 7 6438304 6438304 G T RAC1 Silent p.T79T 0.33 TCGA-94-8490-01 7 66418288 66418288 T C TMEM248 Missense_Mutation p.C286R 0.38 deleterious(0) probably_damaging(0.999) TCGA-94-8490-01 7 70255859 70255859 A G AUTS2 Silent p.A1219A 0.20 TCGA-94-8490-01 7 72861626 72861640 TCCTCCTCCTCTTCT - BAZ1B In_Frame_Del p.E1269_E1273del 0.36 TCGA-94-8490-01 7 74103461 74103461 T A GTF2I 5'UTR 0.38 TCGA-94-8490-01 7 76021292 76021292 C A SRCRB4D Missense_Mutation p.R467L 0.54 tolerated(0.69) benign(0.049) TCGA-94-8490-01 7 810161 810161 C T HEATR2 Silent p.L613L 0.11 TCGA-94-8490-01 7 84629133 84629133 G A SEMA3D Nonsense_Mutation p.R653* 0.36 TCGA-94-8490-01 7 87190584 87190584 A G ABCB1 Silent p.L274L 0.45 TCGA-94-8490-01 7 87912128 87912128 T C STEAP4 Missense_Mutation p.Y271C 0.06 deleterious(0.02) possibly_damaging(0.451) TCGA-94-8490-01 7 87912170 87912170 A T STEAP4 Nonsense_Mutation p.L257* 0.07 TCGA-94-8490-01 7 91727522 91727522 T G AKAP9 Silent p.G3569G 0.27 TCGA-94-8490-01 7 91936912 91936912 A G ANKIB1 Missense_Mutation p.N143S 0.06 tolerated(0.12) possibly_damaging(0.81) TCGA-94-8490-01 7 97821436 97821436 C T LMTK2 Silent p.I553I 0.08 TCGA-94-8490-01 7 98529063 98529063 G A TRRAP Silent p.T1209T 0.27 TCGA-94-8490-01 7 99057751 99057751 G A PTCD1 Missense_Mutation p.R27W 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-94-8490-01 7 99705226 99705226 C T TAF6 Silent p.S596S 0.32 TCGA-94-8490-01 8 103269877 103269877 T C UBR5 Missense_Mutation p.T2724A 0.22 tolerated(0.65) probably_damaging(0.926) TCGA-94-8490-01 8 103289349 103289349 T - UBR5 Frame_Shift_Del p.E2121Kfs*28 0.10 TCGA-94-8490-01 8 105502983 105502983 T C LRP12 Missense_Mutation p.H833R 0.09 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-94-8490-01 8 110308618 110308618 A G NUDCD1 Missense_Mutation p.W152R 0.39 deleterious(0) probably_damaging(0.997) TCGA-94-8490-01 8 110477462 110477462 G A PKHD1L1 Missense_Mutation p.G2801S 0.36 deleterious(0.01) probably_damaging(0.972) TCGA-94-8490-01 8 110575717 110575717 G C EBAG9 Intron 0.34 TCGA-94-8490-01 8 110984672 110984672 C T KCNV1 Missense_Mutation p.R269H 0.40 tolerated(0.07) benign(0.005) TCGA-94-8490-01 8 11301695 11301695 G A FAM167A Missense_Mutation p.R76C 0.35 tolerated(0.13) benign(0) TCGA-94-8490-01 8 113293459 113293459 G A CSMD3 Missense_Mutation p.S3151L 0.36 tolerated(0.54) benign(0.149) TCGA-94-8490-01 8 113348983 113348983 A C CSMD3 Missense_Mutation p.F2306C 0.12 tolerated(0.16) probably_damaging(0.99) TCGA-94-8490-01 8 113871422 113871422 G T CSMD3 Missense_Mutation p.D569E 0.35 tolerated(0.63) benign(0.04) TCGA-94-8490-01 8 11607717 11607717 C T GATA4 Missense_Mutation p.A294V 0.35 deleterious(0) probably_damaging(1) TCGA-94-8490-01 8 117669478 117669478 T C EIF3H Missense_Mutation p.K178R 0.37 tolerated(0.35) benign(0.048) TCGA-94-8490-01 8 124413114 124413114 A G ATAD2 5'Flank 0.08 TCGA-94-8490-01 8 124516841 124516841 T C FBXO32 Intron 0.45 TCGA-94-8490-01 8 125015534 125015534 T G FER1L6 Missense_Mutation p.I549M 0.41 tolerated(0.22) benign(0.004) TCGA-94-8490-01 8 125103707 125103707 A T FER1L6 Missense_Mutation p.I1479F 0.39 deleterious(0) possibly_damaging(0.653) TCGA-94-8490-01 8 130867891 130867891 A T FAM49B Missense_Mutation p.I135N 0.10 deleterious(0) benign(0.337) TCGA-94-8490-01 8 131793114 131793114 T C ADCY8 Missense_Mutation p.H1093R 0.33 deleterious(0.01) benign(0.005) TCGA-94-8490-01 8 133923708 133923708 A G TG Silent p.G1363G 0.37 TCGA-94-8490-01 8 134031863 134031863 C A TG Missense_Mutation p.P2267T 0.28 deleterious(0) possibly_damaging(0.875) TCGA-94-8490-01 8 134487976 134487976 A G ST3GAL1 Missense_Mutation p.Y98H 0.42 probably_damaging(0.993) TCGA-94-8490-01 8 139164863 139164863 C A FAM135B Nonsense_Mutation p.G619* 0.36 TCGA-94-8490-01 8 144803200 144803200 A C MAPK15 Silent p.R316R 0.07 TCGA-94-8490-01 8 144999939 144999939 C T PLEC Silent p.A1523A 0.42 TCGA-94-8490-01 8 22888377 22888377 T C TNFRSF10B Missense_Mutation p.I87V 0.38 tolerated(1) benign(0.334) TCGA-94-8490-01 8 24167472 24167473 - AA ADAM28 Frame_Shift_Ins p.N75Kfs*54 0.23 TCGA-94-8490-01 8 25303692 25303692 A G KCTD9 Silent p.S41S 0.10 TCGA-94-8490-01 8 27402178 27402178 A G EPHX2 3'UTR 0.46 TCGA-94-8490-01 8 27903166 27903166 A G NUGGC Silent p.L442L 0.32 TCGA-94-8490-01 8 35406823 35406823 C T UNC5D Silent p.G39G 0.36 TCGA-94-8490-01 8 35608262 35608262 T C UNC5D Missense_Mutation p.S700P 0.37 tolerated(0.21) benign(0.424) TCGA-94-8490-01 8 37963065 37963065 C A ASH2L 5'UTR 0.43 TCGA-94-8490-01 8 38205092 38205092 T - WHSC1L1 Frame_Shift_Del p.S200Afs*20 0.09 TCGA-94-8490-01 8 56866516 56866516 G A LYN Missense_Mutation p.A255T 0.37 tolerated(0.12) benign(0.017) TCGA-94-8490-01 8 62578031 62578031 G C ASPH Intron 0.45 TCGA-94-8490-01 8 68140238 68140238 C G ARFGEF1 Missense_Mutation p.W1184S 0.35 deleterious(0) probably_damaging(0.999) TCGA-94-8490-01 8 68395863 68395863 T C CPA6 Intron 0.10 TCGA-94-8490-01 8 68950417 68950417 C T PREX2 Silent p.C243C 0.34 TCGA-94-8490-01 8 73480205 73480205 A G KCNB2 Missense_Mutation p.D79G 0.42 deleterious(0) probably_damaging(0.944) TCGA-94-8490-01 8 74205836 74205836 T C RPL7 Silent p.V4V 0.32 TCGA-94-8490-01 8 75156921 75156921 T C JPH1 Missense_Mutation p.K583R 0.41 tolerated(0.48) benign(0) TCGA-94-8490-01 8 76472606 76472606 A T HNF4G Missense_Mutation p.H374L 0.40 tolerated(0.3) benign(0.19) TCGA-94-8490-01 8 7721120 7721120 A C SPAG11A 3'UTR 0.10 TCGA-94-8490-01 8 77766764 77766764 C A ZFHX4 Missense_Mutation p.P2536H 0.41 probably_damaging(0.998) TCGA-94-8490-01 8 77768099 77768099 G - ZFHX4 Frame_Shift_Del p.A2982Qfs*10 0.25 TCGA-94-8490-01 8 80567133 80567133 T C STMN2 Silent p.L106L 0.44 TCGA-94-8490-01 8 82392765 82392765 C G FABP4 Missense_Mutation p.D48H 0.39 deleterious(0) probably_damaging(0.932) TCGA-94-8490-01 8 85097247 85097247 G A RALYL Missense_Mutation p.R5H 0.36 tolerated_low_confidence(0.29) benign(0.068) TCGA-94-8490-01 8 90937252 90937252 A T OSGIN2 Missense_Mutation p.D381V 0.07 deleterious(0) probably_damaging(0.995) TCGA-94-8490-01 8 91078136 91078136 G T CALB1 Missense_Mutation p.T147K 0.40 deleterious(0) probably_damaging(0.998) TCGA-94-8490-01 8 91893343 91893343 G A NECAB1 Missense_Mutation p.M114I 0.18 deleterious(0) probably_damaging(0.914) TCGA-94-8490-01 8 95412630 95412630 A C RAD54B Missense_Mutation p.C336G 0.43 deleterious(0) probably_damaging(0.993) TCGA-94-8490-01 8 95556106 95556106 A T KIAA1429 Missense_Mutation p.I43K 0.09 deleterious(0) probably_damaging(0.997) TCGA-94-8490-01 8 95854621 95854621 A G INTS8 Missense_Mutation p.T389A 0.35 tolerated(0.86) benign(0.003) TCGA-94-8490-01 9 101748297 101748297 G A COL15A1 Missense_Mutation p.R184H 0.28 tolerated(0.47) benign(0.003) TCGA-94-8490-01 9 111798503 111798503 G C TMEM245 Missense_Mutation p.I794M 0.40 deleterious(0) probably_damaging(0.997) TCGA-94-8490-01 9 111956588 111956588 A G EPB41L4B Missense_Mutation p.V712A 0.37 tolerated_low_confidence(0.4) benign(0.001) TCGA-94-8490-01 9 117819649 117819650 - AA TNC Frame_Shift_Ins p.N1455Sfs*82 0.25 TCGA-94-8490-01 9 120466845 120466845 T C TLR4 Splice_Site p.X31_splice 0.37 TCGA-94-8490-01 9 121929752 121929752 C A BRINP1 Missense_Mutation p.E632D 0.31 tolerated(0.4) benign(0) TCGA-94-8490-01 9 128122812 128122812 T C GAPVD1 Silent p.Y1377Y 0.07 TCGA-94-8490-01 9 131374117 131374117 C A SPTAN1 Missense_Mutation p.A1633D 0.25 tolerated(0.19) benign(0.012) TCGA-94-8490-01 9 131388860 131388860 A C SPTAN1 Missense_Mutation p.E2157A 0.07 tolerated(0.48) benign(0.018) TCGA-94-8490-01 9 131480836 131480836 A G PKN3 Missense_Mutation p.K686R 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-94-8490-01 9 131482026 131482026 G T PKN3 Missense_Mutation p.E729D 0.40 deleterious(0) probably_damaging(0.997) TCGA-94-8490-01 9 13206012 13206012 T C MPDZ Silent p.L459L 0.07 TCGA-94-8490-01 9 132627654 132627654 C T USP20 Silent p.A228A 0.42 TCGA-94-8490-01 9 134006189 134006189 G A NUP214 Missense_Mutation p.G210E 0.35 unknown(0) TCGA-94-8490-01 9 134526260 134526260 C T RAPGEF1 Silent p.T47T 0.36 TCGA-94-8490-01 9 136230378 136230379 - T SURF4 Frame_Shift_Ins p.E268Gfs*13 0.26 TCGA-94-8490-01 9 139752850 139752850 A T MAMDC4 Splice_Site p.X892_splice 0.11 TCGA-94-8490-01 9 139820284 139820284 G A TRAF2 Silent p.E479E 0.30 TCGA-94-8490-01 9 139983376 139983376 A - MAN1B1 Frame_Shift_Del p.K129Nfs*49 0.29 TCGA-94-8490-01 9 140166980 140166980 C T NELFB Silent p.H503H 0.27 TCGA-94-8490-01 9 140325755 140325755 G A NOXA1 Missense_Mutation p.G256S 0.05 tolerated(0.49) benign(0.008) TCGA-94-8490-01 9 15474125 15474129 TCTTT - PSIP1 Frame_Shift_Del p.K246Afs*3 0.37 TCGA-94-8490-01 9 20414340 20414340 G A MLLT3 Silent p.S168S 0.30 TCGA-94-8490-01 9 20952997 20952997 T C FOCAD Silent p.Y1355Y 0.13 TCGA-94-8490-01 9 21206770 21206770 G T IFNA10 Silent p.S109S 0.39 TCGA-94-8490-01 9 21334635 21334635 T C KLHL9 Missense_Mutation p.D75G 0.37 deleterious(0.01) possibly_damaging(0.707) TCGA-94-8490-01 9 36353200 36353200 A C RNF38 Missense_Mutation p.H346Q 0.17 deleterious(0.05) benign(0.348) TCGA-94-8490-01 9 37761930 37761930 T C TRMT10B Translation_Start_Site p.M1? 0.85 deleterious_low_confidence(0) possibly_damaging(0.451) TCGA-94-8490-01 9 39118252 39118252 T A CNTNAP3 Silent p.G695G 0.16 TCGA-94-8490-01 9 39178298 39178299 - T CNTNAP3 Frame_Shift_Ins p.P200Tfs*14 0.16 TCGA-94-8490-01 9 5756258 5756258 A T KIAA1432 Missense_Mutation p.H580L 0.56 tolerated(0.22) benign(0.055) TCGA-94-8490-01 9 71152094 71152094 C T TMEM252 3'UTR 0.23 TCGA-94-8490-01 9 71395816 71395816 G T FAM122A Nonsense_Mutation p.G246* 0.37 TCGA-94-8490-01 9 73458008 73458008 G T TRPM3 Missense_Mutation p.H238N 0.41 deleterious(0) probably_damaging(0.993) TCGA-94-8490-01 9 77742496 77742496 A G OSTF1 Silent p.L31L 0.42 TCGA-94-8490-01 9 84605403 84605403 T C SPATA31D1 Splice_Site p.X101_splice 0.32 TCGA-94-8490-01 9 85597535 85597535 T A RASEF 3'UTR 0.34 TCGA-94-8490-01 9 86894299 86894299 G A SLC28A3 Silent p.G610G 0.13 TCGA-94-8490-01 9 90254292 90254292 T A DAPK1 Missense_Mutation p.D149E 0.35 tolerated(0.28) benign(0.002) TCGA-94-8490-01 9 95076615 95076615 G A NOL8 Silent p.A764A 0.30 TCGA-94-8490-01 9 96060216 96060217 - C WNK2 Frame_Shift_Ins p.N1970Qfs*47 0.48 TCGA-94-8490-01 9 98740347 98740347 C T ERCC6L2 Silent p.G86G 0.24 TCGA-94-8490-01 9 99180159 99180159 C A ZNF367 Silent p.P52P 0.50 TCGA-94-8490-01 X 107911571 107911571 A G COL4A5 Silent p.L1209L 0.60 TCGA-94-8490-01 X 114868329 114868329 C T PLS3 Missense_Mutation p.S173L 0.72 deleterious(0) probably_damaging(0.998) TCGA-94-8490-01 X 123159704 123159705 - T STAG2 Frame_Shift_Ins p.S22Ffs*3 0.41 TCGA-94-8490-01 X 123515051 123515051 G A TENM1 Missense_Mutation p.R2512W 0.75 tolerated(0.09) benign(0.339) TCGA-94-8490-01 X 123699247 123699247 C A TENM1 Missense_Mutation p.W747C 0.70 deleterious(0) probably_damaging(1) TCGA-94-8490-01 X 132160646 132160646 T C USP26 Missense_Mutation p.N535D 0.74 tolerated(1) benign(0.006) TCGA-94-8490-01 X 134989216 134989216 A G SAGE1 Missense_Mutation p.N290D 0.11 tolerated(0.36) benign(0.036) TCGA-94-8490-01 X 134994961 134994961 A - SAGE1 Frame_Shift_Del p.V876Lfs*3 0.57 TCGA-94-8490-01 X 138724700 138724700 T A MCF2 Intron 0.45 TCGA-94-8490-01 X 140992862 140992862 G T MAGEC1 Missense_Mutation p.G2W 0.75 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-94-8490-01 X 142718204 142718204 T A SLITRK4 Missense_Mutation p.I241F 0.73 deleterious(0) possibly_damaging(0.518) TCGA-94-8490-01 X 14627173 14627173 T A GLRA2 Missense_Mutation p.I259N 0.11 deleterious(0) possibly_damaging(0.873) TCGA-94-8490-01 X 14876073 14876073 C T FANCB Missense_Mutation p.E370K 0.78 tolerated(0.37) benign(0.013) TCGA-94-8490-01 X 153005556 153005556 G A ABCD1 Missense_Mutation p.G500D 0.82 deleterious(0.04) possibly_damaging(0.557) TCGA-94-8490-01 X 153248101 153248101 G - TMEM187 Frame_Shift_Del p.V198Cfs*47 0.48 TCGA-94-8490-01 X 154294044 154294044 T C MTCP1 Silent p.A42A 0.60 TCGA-94-8490-01 X 17744255 17744255 G T NHS Nonsense_Mutation p.E656* 0.77 TCGA-94-8490-01 X 18606133 18606133 G T CDKL5 Missense_Mutation p.S205I 0.67 tolerated_low_confidence(0.08) benign(0.152) TCGA-94-8490-01 X 24833197 24833197 G T POLA1 Missense_Mutation p.S1127I 0.82 tolerated(0.06) benign(0.027) TCGA-94-8490-01 X 27765890 27765890 G A DCAF8L2 Missense_Mutation p.R293H 0.67 tolerated(0.09) benign(0.171) TCGA-94-8490-01 X 27999467 27999467 C T DCAF8L1 5'UTR 0.77 TCGA-94-8490-01 X 2832740 2832740 G A ARSD Intron 0.46 TCGA-94-8490-01 X 29414487 29414487 A T IL1RAPL1 Missense_Mutation p.S159C 0.67 deleterious(0.01) benign(0.018) TCGA-94-8490-01 X 31089740 31089740 C A FTHL17 Missense_Mutation p.V111F 0.71 deleterious(0) possibly_damaging(0.799) TCGA-94-8490-01 X 38013787 38013787 A G SRPX Missense_Mutation p.V380A 0.11 deleterious(0) possibly_damaging(0.723) TCGA-94-8490-01 X 38016279 38016279 A G SRPX Missense_Mutation p.M320T 0.19 deleterious(0) benign(0.342) TCGA-94-8490-01 X 41089015 41089015 G T USP9X Nonsense_Mutation p.E2472* 0.73 TCGA-94-8490-01 X 41206947 41206948 - G DDX3X Frame_Shift_Ins p.V657Gfs*2 0.44 TCGA-94-8490-01 X 47435566 47435566 C T SYN1 Silent p.A374A 0.59 TCGA-94-8490-01 X 48760688 48760688 C A SLC35A2 3'UTR 0.80 TCGA-94-8490-01 X 53253930 53253930 G T KDM5C Missense_Mutation p.P48T 0.09 deleterious(0) probably_damaging(1) TCGA-94-8490-01 X 53421792 53421792 T C SMC1A Missense_Mutation p.E960G 0.74 tolerated(0.16) benign(0.014) TCGA-94-8490-01 X 55047607 55047607 A G ALAS2 Silent p.A172A 0.76 TCGA-94-8490-01 X 64749636 64749636 C T LAS1L Missense_Mutation p.E213K 0.75 tolerated(0.18) benign(0.15) TCGA-94-8490-01 X 69479033 69479033 G A P2RY4 Missense_Mutation p.R148C 0.78 tolerated(0.07) benign(0.035) TCGA-94-8490-01 X 78619004 78619004 A G ITM2A Silent p.C53C 0.17 TCGA-94-8490-01 X 79286243 79286243 G C TBX22 Missense_Mutation p.S399T 0.77 tolerated(0.39) benign(0.118) TCGA-94-8490-01 X 8433831 8433831 C T VCX3B Missense_Mutation p.R50C 0.37 tolerated_low_confidence(0.1) unknown(0) TCGA-94-8490-01 X 86773044 86773044 G T KLHL4 Missense_Mutation p.G50C 0.71 deleterious_low_confidence(0.03) probably_damaging(0.957) TCGA-94-8490-01 X 86869463 86869463 A T KLHL4 Missense_Mutation p.Y206F 0.68 deleterious(0) probably_damaging(0.999) TCGA-94-8490-01 X 91642834 91642834 C A PCDH11X Missense_Mutation p.S1082Y 0.70 deleterious(0) benign(0.14) TCGA-94-8490-01 X 91873545 91873545 C T PCDH11X Missense_Mutation p.S1217F 0.74 deleterious_low_confidence(0.02) benign(0.282) TCGA-94-8490-01 X 99662568 99662568 G A PCDH19 Missense_Mutation p.P343L 0.20 tolerated(0.27) benign(0.003) TCGA-94-8490-01 Y 3447725 3447725 G T TGIF2LY Missense_Mutation p.G147V 0.79 tolerated(0.08) benign(0.243) TCGA-94-8490-01 Y 4967202 4967202 G T PCDH11Y Missense_Mutation p.G528V 0.77 deleterious(0) probably_damaging(0.993) TCGA-94-8490-01 Y 5605905 5605905 T G PCDH11Y Silent p.P1315P 0.09 TCGA-94-8490-01 Y 9195450 9195450 G A TSPY8 5'Flank 0.30 TCGA-94-8491-01 10 104230656 104230656 C T TMEM180 Silent p.L162L 0.07 TCGA-94-8491-01 10 105005924 105005924 T G RPEL1 Silent p.L57L 0.09 TCGA-94-8491-01 10 105331387 105331387 T A NEURL1 Missense_Mutation p.W153R 0.28 deleterious(0) probably_damaging(0.999) TCGA-94-8491-01 10 115355479 115355479 T G NRAP Missense_Mutation p.Y1480S 0.21 deleterious(0) possibly_damaging(0.889) TCGA-94-8491-01 10 116930988 116930988 T A ATRNL1 Missense_Mutation p.I429N 0.32 deleterious(0) possibly_damaging(0.526) TCGA-94-8491-01 10 118215337 118215337 T C PNLIPRP3 Missense_Mutation p.I187T 0.24 deleterious(0) probably_damaging(1) TCGA-94-8491-01 10 119134076 119134076 C A PDZD8 Missense_Mutation p.K221N 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-94-8491-01 10 11963182 11963182 C G UPF2 3'UTR 0.10 TCGA-94-8491-01 10 120809459 120809459 C A EIF3A Nonsense_Mutation p.E838* 0.28 TCGA-94-8491-01 10 123971224 123971224 G T TACC2 Splice_Site p.X2428_splice 0.27 TCGA-94-8491-01 10 124754090 124754090 G C IKZF5 Missense_Mutation p.H156D 0.15 deleterious(0) probably_damaging(0.95) TCGA-94-8491-01 10 125521482 125521482 G A CPXM2 Silent p.L561L 0.26 TCGA-94-8491-01 10 12856257 12856257 G T CAMK1D Missense_Mutation p.K235N 0.29 tolerated(0.07) benign(0.213) TCGA-94-8491-01 10 134981810 134981810 C A KNDC1 Silent p.T118T 0.04 TCGA-94-8491-01 10 18284624 18284624 G T SLC39A12 Missense_Mutation p.G525C 0.28 tolerated(0.05) possibly_damaging(0.72) TCGA-94-8491-01 10 25886850 25886850 C T GPR158 Silent p.V765V 0.25 TCGA-94-8491-01 10 26482182 26482182 C A MYO3A Missense_Mutation p.P1496H 0.08 deleterious_low_confidence(0.02) possibly_damaging(0.873) TCGA-94-8491-01 10 26790051 26790051 G - APBB1IP Intron 0.23 TCGA-94-8491-01 10 26802475 26802475 T C APBB1IP Silent p.F233F 0.09 TCGA-94-8491-01 10 26880343 26880343 G A LINC00264 Splice_Site 0.23 TCGA-94-8491-01 10 27524052 27524052 C T ACBD5 Missense_Mutation p.G91R 0.23 deleterious(0) probably_damaging(0.971) TCGA-94-8491-01 10 35318530 35318530 C A CUL2 Silent p.R494R 0.10 TCGA-94-8491-01 10 48429481 48429481 G C GDF10 Missense_Mutation p.F135L 0.23 deleterious(0.02) benign(0.198) TCGA-94-8491-01 10 7214001 7214001 G T SFMBT2 Silent p.P757P 0.41 TCGA-94-8491-01 10 73442210 73442210 G A CDH23 Missense_Mutation p.V215I 0.23 deleterious(0.01) possibly_damaging(0.897) TCGA-94-8491-01 10 8007425 8007425 C T TAF3 Missense_Mutation p.A651V 0.05 tolerated_low_confidence(0.16) benign(0.034) TCGA-94-8491-01 10 87362348 87362348 C G GRID1 Missense_Mutation p.E904D 0.23 tolerated_low_confidence(1) benign(0.004) TCGA-94-8491-01 10 88414596 88414596 G A OPN4 Missense_Mutation p.C19Y 0.04 tolerated_low_confidence(0.11) benign(0.242) TCGA-94-8491-01 10 88820779 88820779 T C GLUD1 Missense_Mutation p.R318G 0.27 deleterious(0) probably_damaging(0.924) TCGA-94-8491-01 10 93024206 93024206 G T PCGF5 Missense_Mutation p.G198C 0.19 deleterious(0.01) probably_damaging(1) TCGA-94-8491-01 10 93683765 93683765 T A BTAF1 5'UTR 0.35 TCGA-94-8491-01 10 97380844 97380863 CAGTCACTTGTTCCAGTTCC - ALDH18A1 Frame_Shift_Del p.L464Ffs*11 0.17 TCGA-94-8491-01 10 99439426 99439426 G T AVPI1 Silent p.P79P 0.24 TCGA-94-8491-01 11 103014095 103014095 A G DYNC2H1 Missense_Mutation p.I891M 0.32 benign(0.009) TCGA-94-8491-01 11 110450680 110450680 T A ARHGAP20 Missense_Mutation p.H997L 0.31 tolerated(0.69) benign(0) TCGA-94-8491-01 11 11964224 11964224 G - USP47 Frame_Shift_Del p.E818Kfs*43 0.24 TCGA-94-8491-01 11 12183861 12183861 C G MICAL2 Silent p.L53L 0.29 TCGA-94-8491-01 11 124619753 124619753 C T VSIG2 Missense_Mutation p.S146N 0.27 deleterious(0.02) benign(0.059) TCGA-94-8491-01 11 12901148 12901148 A T TEAD1 Intron 0.42 TCGA-94-8491-01 11 15994304 15994304 G C SOX6 3'UTR 0.28 TCGA-94-8491-01 11 17544794 17544794 A G USH1C Silent p.S280S 0.17 TCGA-94-8491-01 11 1861797 1861797 G A TNNI2 Missense_Mutation p.E33K 0.32 deleterious(0) probably_damaging(0.982) TCGA-94-8491-01 11 18636158 18636158 G C SPTY2D1 Missense_Mutation p.Q555E 0.05 deleterious(0.02) possibly_damaging(0.504) TCGA-94-8491-01 11 18738504 18738504 C T IGSF22 Silent p.V339V 0.21 TCGA-94-8491-01 11 21135231 21135231 A T NELL1 Missense_Mutation p.Y466F 0.21 tolerated(0.11) benign(0.06) TCGA-94-8491-01 11 26743189 26743189 C A SLC5A12 Missense_Mutation p.G25W 0.19 deleterious(0) probably_damaging(1) TCGA-94-8491-01 11 33049231 33049231 G T DEPDC7 Splice_Site p.X155_splice 0.16 TCGA-94-8491-01 11 33677565 33677565 G A KIAA1549L Missense_Mutation p.R1626K 0.40 deleterious(0.01) benign(0.358) TCGA-94-8491-01 11 43418961 43418961 G A TTC17 Missense_Mutation p.D280N 0.23 deleterious(0.02) possibly_damaging(0.667) TCGA-94-8491-01 11 44255769 44255769 C A EXT2 Missense_Mutation p.N670K 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-94-8491-01 11 45672512 45672512 A T CHST1 5'UTR 0.06 TCGA-94-8491-01 11 45877578 45877578 A T CRY2 Missense_Mutation p.K108N 0.30 deleterious(0.03) possibly_damaging(0.511) TCGA-94-8491-01 11 46801745 46801745 T A CKAP5 Missense_Mutation p.K811M 0.10 deleterious(0) possibly_damaging(0.895) TCGA-94-8491-01 11 46918501 46918501 G A LRP4 Missense_Mutation p.R281C 0.22 deleterious(0.01) probably_damaging(0.989) TCGA-94-8491-01 11 4703278 4703278 G T OR51E2 Silent p.R222R 0.34 TCGA-94-8491-01 11 4976568 4976568 G C OR51A2 Missense_Mutation p.L126V 0.46 tolerated(1) benign(0.035) TCGA-94-8491-01 11 55419301 55419301 G C OR4S2 Missense_Mutation p.A308P 0.46 tolerated(0.21) benign(0.003) TCGA-94-8491-01 11 56113851 56113851 T C OR8K1 Missense_Mutation p.F113L 0.25 deleterious_low_confidence(0.05) benign(0.364) TCGA-94-8491-01 11 59211061 59211061 C A OR5A1 Silent p.T140T 0.24 TCGA-94-8491-01 11 59211062 59211062 C A OR5A1 Missense_Mutation p.Q141K 0.24 tolerated(0.11) benign(0.044) TCGA-94-8491-01 11 59812219 59812219 G T OOSP2 Nonsense_Mutation p.E107* 0.22 TCGA-94-8491-01 11 60229864 60229864 A T MS4A1 Missense_Mutation p.N6I 0.30 deleterious(0) probably_damaging(0.965) TCGA-94-8491-01 11 60470922 60470922 A G MS4A8 Silent p.E97E 0.26 TCGA-94-8491-01 11 62297812 62297812 A C AHNAK Missense_Mutation p.I1359M 0.05 benign(0.198) TCGA-94-8491-01 11 62393610 62393610 C G GANAB Missense_Mutation p.E906D 0.04 tolerated(0.4) benign(0.003) TCGA-94-8491-01 11 62487631 62487631 C T HNRNPUL2 Silent p.K548K 0.16 TCGA-94-8491-01 11 62767236 62767236 G T SLC22A8 Silent p.T172T 0.04 TCGA-94-8491-01 11 64434900 64434900 A T NRXN2 Silent p.G540G 0.08 TCGA-94-8491-01 11 64599007 64599007 G A CDC42BPG Silent p.L1092L 0.06 TCGA-94-8491-01 11 64645673 64645673 G C EHD1 Missense_Mutation p.I88M 0.18 deleterious(0) probably_damaging(0.958) TCGA-94-8491-01 11 64756559 64756559 C A BATF2 3'UTR 0.27 TCGA-94-8491-01 11 65367205 65367205 C G MAP3K11 Missense_Mutation p.E622D 0.39 tolerated(0.4) benign(0.099) TCGA-94-8491-01 11 65546485 65546485 C A AP5B1 Silent p.L493L 0.25 TCGA-94-8491-01 11 66063130 66063130 C T TMEM151A 3'UTR 0.27 TCGA-94-8491-01 11 67564230 67564230 G A FAM86C2P RNA 0.39 TCGA-94-8491-01 11 76893627 76893627 C A MYO7A Silent p.A1089A 0.17 TCGA-94-8491-01 11 92531575 92531575 G A FAT3 Missense_Mutation p.R1799Q 0.36 benign(0.216) TCGA-94-8491-01 12 100048885 100048885 C A ANKS1B Missense_Mutation p.C411F 0.07 deleterious(0.04) probably_damaging(0.986) TCGA-94-8491-01 12 101603432 101603432 G A SLC5A8 Silent p.F65F 0.26 TCGA-94-8491-01 12 108620899 108620899 G T WSCD2 Missense_Mutation p.G313W 0.33 deleterious(0.01) possibly_damaging(0.7) TCGA-94-8491-01 12 108919271 108919271 T C SART3 Missense_Mutation p.D829G 0.21 tolerated(0.14) benign(0.026) TCGA-94-8491-01 12 108923985 108923985 T C SART3 Missense_Mutation p.I617V 0.33 tolerated(0.41) benign(0.004) TCGA-94-8491-01 12 111168523 111168523 C A PPP1CC Nonsense_Mutation p.E77* 0.06 TCGA-94-8491-01 12 113382418 113382418 A G OAS3 Missense_Mutation p.K200E 0.06 deleterious(0) possibly_damaging(0.618) TCGA-94-8491-01 12 113532914 113532914 G A DTX1 Missense_Mutation p.G485E 0.29 deleterious(0) probably_damaging(1) TCGA-94-8491-01 12 120213628 120213628 G C CIT Missense_Mutation p.Q635E 0.26 deleterious(0.01) benign(0.148) TCGA-94-8491-01 12 120574338 120574338 G C GCN1L1 Missense_Mutation p.L2326V 0.24 benign(0.194) TCGA-94-8491-01 12 132627411 132627411 G A DDX51 Silent p.L178L 0.06 TCGA-94-8491-01 12 13715992 13715992 C A GRIN2B Missense_Mutation p.D1394Y 0.09 deleterious(0) probably_damaging(1) TCGA-94-8491-01 12 21995364 21995364 C A ABCC9 Silent p.L1119L 0.14 TCGA-94-8491-01 12 26777270 26777270 A G ITPR2 Silent p.D1028D 0.18 TCGA-94-8491-01 12 26806999 26806999 T C ITPR2 Missense_Mutation p.R884G 0.07 deleterious(0) probably_damaging(0.971) TCGA-94-8491-01 12 40012799 40012799 C A ABCD2 Missense_Mutation p.D207Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-94-8491-01 12 40668384 40668384 G T LRRK2 Splice_Site p.X553_splice 0.26 TCGA-94-8491-01 12 40699691 40699691 A G LRRK2 Missense_Mutation p.I1294M 0.20 tolerated(0.12) possibly_damaging(0.864) TCGA-94-8491-01 12 51634138 51634138 A G DAZAP2 Missense_Mutation p.T9A 0.06 deleterious_low_confidence(0.04) probably_damaging(0.979) TCGA-94-8491-01 12 52201136 52201136 G C SCN8A Missense_Mutation p.E1956Q 0.34 deleterious_low_confidence(0) benign(0.029) TCGA-94-8491-01 12 57440376 57440376 G T MYO1A Silent p.I200I 0.05 TCGA-94-8491-01 12 57498526 57498526 C G STAT6 Missense_Mutation p.A358P 0.25 deleterious(0) probably_damaging(1) TCGA-94-8491-01 12 57577900 57577900 G A LRP1 Missense_Mutation p.V1988I 0.37 probably_damaging(0.997) TCGA-94-8491-01 12 57884041 57884041 C T MARS Missense_Mutation p.P181L 0.27 tolerated(0.3) benign(0.01) TCGA-94-8491-01 12 68642535 68642535 G A IL22 3'UTR 0.24 TCGA-94-8491-01 12 72068135 72068135 C A THAP2 Missense_Mutation p.A75D 0.20 deleterious(0) probably_damaging(0.998) TCGA-94-8491-01 12 75804223 75804223 G T GLIPR1L2 Missense_Mutation p.V82L 0.18 tolerated(0.16) possibly_damaging(0.793) TCGA-94-8491-01 12 9305425 9305426 GG A PZP Frame_Shift_Del p.T1372Ifs*14 0.34 TCGA-94-8491-01 12 99117076 99117076 G C APAF1 Missense_Mutation p.D1064H 0.21 deleterious(0) probably_damaging(0.99) TCGA-94-8491-01 13 113798275 113798275 G T F10 Missense_Mutation p.A205S 0.41 tolerated(0.82) benign(0.013) TCGA-94-8491-01 13 41133836 41133836 G T FOXO1 Missense_Mutation p.L598I 0.29 deleterious(0.02) probably_damaging(0.978) TCGA-94-8491-01 13 41705930 41705930 A G KBTBD6 Missense_Mutation p.C240R 0.10 tolerated(0.27) probably_damaging(0.948) TCGA-94-8491-01 13 42873799 42873799 C T AKAP11 Missense_Mutation p.S306L 0.08 deleterious(0) probably_damaging(1) TCGA-94-8491-01 13 42874901 42874907 TCCACAG - AKAP11 Frame_Shift_Del p.P674Vfs*10 0.15 TCGA-94-8491-01 13 53422593 53422593 C T PCDH8 5'UTR 0.17 TCGA-94-8491-01 14 101500139 101500139 C T MIR495 RNA 0.57 TCGA-94-8491-01 14 20249197 20249197 T C OR4M1 Missense_Mutation p.M239T 0.22 deleterious(0) benign(0.002) TCGA-94-8491-01 14 20915603 20915603 T A OSGEP Missense_Mutation p.S316C 0.17 deleterious(0.02) benign(0.005) TCGA-94-8491-01 14 23451459 23451459 T G RP11-298I3.5 Missense_Mutation p.E4A 0.15 deleterious(0.01) benign(0.024) TCGA-94-8491-01 14 25044525 25044525 C G CTSG Missense_Mutation p.G50A 0.10 deleterious(0.01) probably_damaging(0.993) TCGA-94-8491-01 14 45497493 45497493 C G FAM179B Missense_Mutation p.R1207G 0.08 deleterious(0.01) benign(0.392) TCGA-94-8491-01 14 52417378 52417378 A T GNG2 5'UTR 0.08 TCGA-94-8491-01 14 60074066 60074066 C G RTN1 Missense_Mutation p.S637T 0.18 deleterious(0.02) probably_damaging(1) TCGA-94-8491-01 14 61115537 61115537 C A SIX1 Missense_Mutation p.G124V 0.33 deleterious(0) probably_damaging(0.981) TCGA-94-8491-01 14 66083084 66083084 C T FUT8 Missense_Mutation p.H159Y 0.34 tolerated(0.12) benign(0.217) TCGA-94-8491-01 14 73718802 73718802 G T PAPLN Missense_Mutation p.S280I 0.19 tolerated(0.2) possibly_damaging(0.568) TCGA-94-8491-01 14 93286169 93286169 G C GOLGA5 Missense_Mutation p.E536D 0.33 tolerated(0.42) benign(0.001) TCGA-94-8491-01 14 95058577 95058577 G C SERPINA5 3'UTR 0.21 TCGA-94-8491-01 15 20657709 20657709 C A HERC2P3 RNA 0.11 TCGA-94-8491-01 15 23048736 23048741 CATGAT - NIPA1 3'UTR 0.16 TCGA-94-8491-01 15 23812519 23812519 G T MKRN3 3'UTR 0.35 TCGA-94-8491-01 15 25219541 25219541 C G SNRPN 5'UTR 0.05 TCGA-94-8491-01 15 27188486 27188486 G C GABRA5 Silent p.A334A 0.33 TCGA-94-8491-01 15 28408288 28408288 C A HERC2 Missense_Mutation p.R3566S 0.21 benign(0.002) TCGA-94-8491-01 15 28459347 28459347 C A HERC2 Nonsense_Mutation p.E2144* 0.23 TCGA-94-8491-01 15 28459348 28459348 C A HERC2 Silent p.A2143A 0.23 TCGA-94-8491-01 15 31327819 31327819 C G TRPM1 Missense_Mutation p.G894A 0.25 tolerated(0.6) benign(0.044) TCGA-94-8491-01 15 33359967 33359967 C G FMN1 Missense_Mutation p.G40A 0.13 deleterious_low_confidence(0) unknown(0) TCGA-94-8491-01 15 34640584 34640584 C A NUTM1 Missense_Mutation p.P144H 0.24 deleterious(0) probably_damaging(0.992) TCGA-94-8491-01 15 34648392 34648392 G C NUTM1 Missense_Mutation p.S700T 0.25 tolerated(0.09) benign(0.051) TCGA-94-8491-01 15 42114588 42114588 A G MAPKBP1 Missense_Mutation p.H1072R 0.35 deleterious(0) probably_damaging(0.987) TCGA-94-8491-01 15 42454318 42454318 A G VPS39 Missense_Mutation p.I791T 0.15 tolerated(0.68) benign(0.001) TCGA-94-8491-01 15 43533073 43533073 C T TGM5 Silent p.G326G 0.20 TCGA-94-8491-01 15 43620765 43620766 - C LCMT2 Frame_Shift_Ins p.H641Qfs*5 0.15 TCGA-94-8491-01 15 43820580 43820580 C T MAP1A Silent p.L2303L 0.27 TCGA-94-8491-01 15 44918550 44918550 G A SPG11 Silent p.A741A 0.06 TCGA-94-8491-01 15 53997403 53997403 A G WDR72 Missense_Mutation p.L377P 0.09 deleterious(0) probably_damaging(0.992) TCGA-94-8491-01 15 58724295 58724295 G T LIPC Missense_Mutation p.A22S 0.28 tolerated(0.39) benign(0.183) TCGA-94-8491-01 15 62208108 62208108 C A VPS13C Missense_Mutation p.W2723C 0.06 deleterious(0) probably_damaging(0.999) TCGA-94-8491-01 15 62939627 62939627 G C TLN2 Missense_Mutation p.E40Q 0.09 deleterious(0.01) probably_damaging(0.969) TCGA-94-8491-01 15 65496807 65496807 C A CILP Missense_Mutation p.G240W 0.31 deleterious(0) probably_damaging(0.928) TCGA-94-8491-01 15 68466086 68466086 T A PIAS1 Missense_Mutation p.L342Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-94-8491-01 15 74927828 74927828 C A EDC3 Missense_Mutation p.V372F 0.09 deleterious(0) probably_damaging(0.991) TCGA-94-8491-01 15 75132965 75132965 G T ULK3 Missense_Mutation p.H163N 0.29 deleterious(0.03) possibly_damaging(0.88) TCGA-94-8491-01 15 75968326 75968326 G A CSPG4 Silent p.V2178V 0.35 TCGA-94-8491-01 15 77906411 77906411 C T LINGO1 Missense_Mutation p.R613H 0.13 deleterious(0.05) benign(0.168) TCGA-94-8491-01 15 78305272 78305272 G C TBC1D2B Missense_Mutation p.N721K 0.06 deleterious(0) probably_damaging(1) TCGA-94-8491-01 15 79750572 79750572 C T KIAA1024 Missense_Mutation p.R695W 0.29 deleterious(0) possibly_damaging(0.715) TCGA-94-8491-01 15 83358202 83358202 A T AP3B2 Missense_Mutation p.H39Q 0.09 deleterious(0.01) possibly_damaging(0.498) TCGA-94-8491-01 15 85407775 85407775 A T ALPK3 Missense_Mutation p.E1736D 0.06 tolerated(0.77) benign(0.034) TCGA-94-8491-01 16 11970003 11970003 G A GSPT1 Silent p.I544I 0.04 TCGA-94-8491-01 16 2577890 2577890 C G AMDHD2 Missense_Mutation p.L178V 0.32 tolerated(0.06) probably_damaging(0.99) TCGA-94-8491-01 16 28188543 28188543 C A XPO6 Nonsense_Mutation p.E69* 0.17 TCGA-94-8491-01 16 29096550 29096550 T C RRN3P2 RNA 0.12 TCGA-94-8491-01 16 29908399 29908399 C A SEZ6L2 Missense_Mutation p.Q85H 0.31 tolerated(0.1) benign(0.214) TCGA-94-8491-01 16 30455879 30455879 G C SEPHS2 Missense_Mutation p.I390M 0.07 possibly_damaging(0.596) TCGA-94-8491-01 16 30455962 30455962 G T SEPHS2 Missense_Mutation p.L363I 0.10 benign(0.366) TCGA-94-8491-01 16 30566393 30566393 C A ZNF764 3'UTR 0.25 TCGA-94-8491-01 16 3079411 3079411 G C CCDC64B Missense_Mutation p.T326S 0.07 tolerated(0.51) benign(0.019) TCGA-94-8491-01 16 30936059 30936059 T G FBXL19 Silent p.G2G 0.14 TCGA-94-8491-01 16 3306579 3306579 C G MEFV Missense_Mutation p.K3N 0.28 deleterious(0.05) benign(0.213) TCGA-94-8491-01 16 425410 425410 A G TMEM8A Missense_Mutation p.V417A 0.05 deleterious(0.02) possibly_damaging(0.69) TCGA-94-8491-01 16 46934690 46934690 G A GPT2 Missense_Mutation p.G144R 0.28 deleterious(0.01) possibly_damaging(0.873) TCGA-94-8491-01 16 48256597 48256597 G C ABCC11 Missense_Mutation p.T230R 0.26 deleterious(0) probably_damaging(0.999) TCGA-94-8491-01 16 5075363 5075363 A G NAGPA 3'UTR 0.07 TCGA-94-8491-01 16 56362578 56362578 G A GNAO1 Silent p.R113R 0.09 TCGA-94-8491-01 16 57292375 57292375 G A PLLP Missense_Mutation p.S144L 0.20 deleterious(0) possibly_damaging(0.766) TCGA-94-8491-01 16 66946598 66946598 C T CDH16 Silent p.V417V 0.06 TCGA-94-8491-01 16 67201080 67201080 C T HSF4 Silent p.C228C 0.14 TCGA-94-8491-01 16 70180066 70180066 G C PDPR Missense_Mutation p.D633H 0.30 tolerated(0.09) probably_damaging(0.959) TCGA-94-8491-01 16 71218852 71218852 G T HYDIN Silent p.T59T 0.26 TCGA-94-8491-01 16 72142199 72142199 A T DHX38 Missense_Mutation p.N1013I 0.06 deleterious(0) probably_damaging(0.989) TCGA-94-8491-01 16 72993736 72993737 GC - ZFHX3 Frame_Shift_Del p.R103Pfs*15 0.26 TCGA-94-8491-01 16 74386033 74386033 A T RP11-252A24.2 RNA 0.45 TCGA-94-8491-01 16 75238149 75238149 G T CTRB2 Silent p.G234G 0.32 TCGA-94-8491-01 16 76461394 76461394 C G CNTNAP4 Missense_Mutation p.L121V 0.13 deleterious(0) probably_damaging(0.976) TCGA-94-8491-01 16 76569522 76569522 G T CNTNAP4 Nonsense_Mutation p.E873* 0.29 TCGA-94-8491-01 16 780905 780905 A T NARFL Missense_Mutation p.V377E 0.17 deleterious(0) probably_damaging(0.999) TCGA-94-8491-01 16 83250980 83250980 A G CDH13 Missense_Mutation p.K219E 0.20 tolerated(0.09) benign(0.272) TCGA-94-8491-01 17 10428286 10428286 C A MYH2 Nonsense_Mutation p.E1587* 0.50 TCGA-94-8491-01 17 1424879 1424879 G C PITPNA 3'UTR 0.40 TCGA-94-8491-01 17 15971357 15971357 G A NCOR1 Missense_Mutation p.A1531V 0.45 benign(0.028) TCGA-94-8491-01 17 16336928 16336928 G T TRPV2 Missense_Mutation p.W677L 0.05 tolerated(0.6) possibly_damaging(0.558) TCGA-94-8491-01 17 16527302 16527302 T C ZNF624 Missense_Mutation p.K300E 0.36 deleterious(0.03) benign(0.028) TCGA-94-8491-01 17 1703391 1703391 C T SMYD4 Missense_Mutation p.E433K 0.50 tolerated(0.08) benign(0.219) TCGA-94-8491-01 17 17697316 17697316 C T RAI1 Missense_Mutation p.R352C 0.04 deleterious(0) probably_damaging(0.999) TCGA-94-8491-01 17 1944877 1944877 C A DPH1 Missense_Mutation p.R402S 0.07 deleterious(0.04) benign(0.131) TCGA-94-8491-01 17 2233633 2233633 C G TSR1 Intron 0.07 TCGA-94-8491-01 17 3144239 3144239 A C OR1D4 RNA 0.36 TCGA-94-8491-01 17 38178232 38178232 C A MED24 Missense_Mutation p.D867Y 0.17 deleterious(0.01) possibly_damaging(0.862) TCGA-94-8491-01 17 40665988 40665988 C A ATP6V0A1 Missense_Mutation p.A748D 0.06 deleterious(0) probably_damaging(1) TCGA-94-8491-01 17 40696010 40696010 G C NAGLU Missense_Mutation p.Q662H 0.42 deleterious(0.02) probably_damaging(0.992) TCGA-94-8491-01 17 40939459 40939459 C T WNK4 Missense_Mutation p.A547V 0.42 tolerated(0.19) unknown(0) TCGA-94-8491-01 17 43552996 43552996 C A PLEKHM1 Missense_Mutation p.M131I 0.10 deleterious(0.01) benign(0.17) TCGA-94-8491-01 17 4646724 4646724 C A ZMYND15 Missense_Mutation p.T424K 0.43 tolerated(0.3) benign(0.105) TCGA-94-8491-01 17 4684093 4684093 C A TM4SF5 Missense_Mutation p.P63T 0.20 deleterious(0.01) possibly_damaging(0.624) TCGA-94-8491-01 17 4701605 4701605 C A PSMB6 Missense_Mutation p.S203Y 0.13 deleterious(0) probably_damaging(0.92) TCGA-94-8491-01 17 5072124 5072124 C G USP6 Silent p.V1097V 0.34 TCGA-94-8491-01 17 56423549 56423549 C G SUPT4H1 3'UTR 0.07 TCGA-94-8491-01 17 57287506 57287506 G C SMG8 Missense_Mutation p.G32R 0.50 tolerated_low_confidence(0.39) benign(0.055) TCGA-94-8491-01 17 7329868 7329868 G A C17orf74 Silent p.E186E 0.39 TCGA-94-8491-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.36 deleterious(0) probably_damaging(0.997) TCGA-94-8491-01 17 7911271 7911271 G A GUCY2D Missense_Mutation p.S530N 0.14 tolerated(0.11) benign(0.025) TCGA-94-8491-01 17 7983424 7983424 G T AC129492.6 Missense_Mutation p.K35N 0.38 benign(0.002) TCGA-94-8491-01 17 79894744 79894744 G A PYCR1 5'UTR 0.60 TCGA-94-8491-01 17 8526460 8526460 T A MYH10 Silent p.L35L 0.04 TCGA-94-8491-01 17 9143060 9143060 C T NTN1 Silent p.R530R 0.42 TCGA-94-8491-01 18 13884704 13884704 C G MC2R Missense_Mutation p.D272H 0.21 deleterious(0) probably_damaging(1) TCGA-94-8491-01 18 14851726 14851726 T A ANKRD30B Silent p.S1142S 0.06 TCGA-94-8491-01 18 30092509 30092509 A C WBP11P1 RNA 0.10 TCGA-94-8491-01 18 46190893 46190893 G T CTIF Missense_Mutation p.K134N 0.11 deleterious_low_confidence(0) possibly_damaging(0.76) TCGA-94-8491-01 18 59854872 59854872 G A KIAA1468 Missense_Mutation p.S45N 0.11 tolerated_low_confidence(0.48) benign(0.024) TCGA-94-8491-01 18 677774 677774 G C ENOSF1 Silent p.L346L 0.13 TCGA-94-8491-01 18 72346831 72346831 G T ZNF407 Missense_Mutation p.A1286S 0.14 tolerated(0.27) benign(0) TCGA-94-8491-01 18 9535974 9535974 G C RALBP1 3'UTR 0.19 TCGA-94-8491-01 19 11406921 11406921 G C TSPAN16 5'UTR 0.38 TCGA-94-8491-01 19 14104387 14104387 G T RFX1 Missense_Mutation p.A90E 0.10 deleterious_low_confidence(0.01) benign(0.024) TCGA-94-8491-01 19 14561789 14561789 G T PKN1 Missense_Mutation p.A286S 0.10 tolerated(0.3) benign(0.009) TCGA-94-8491-01 19 15730317 15730317 G A AD000091.2 5'Flank 0.32 TCGA-94-8491-01 19 16790804 16790804 A G TMEM38A Missense_Mutation p.E45G 0.21 tolerated(0.11) probably_damaging(0.942) TCGA-94-8491-01 19 17212853 17212853 T A MYO9B Missense_Mutation p.L109Q 0.09 deleterious(0) probably_damaging(1) TCGA-94-8491-01 19 18333106 18333106 A C PDE4C Missense_Mutation p.C90W 0.14 deleterious_low_confidence(0.03) benign(0.267) TCGA-94-8491-01 19 18672819 18672819 A T KXD1 Intron 0.39 TCGA-94-8491-01 19 19790057 19790057 C T ZNF101 Missense_Mutation p.P87S 0.06 tolerated(0.17) benign(0.081) TCGA-94-8491-01 19 22272003 22272003 A G ZNF257 Missense_Mutation p.E484G 0.16 deleterious(0.03) possibly_damaging(0.503) TCGA-94-8491-01 19 287730 287730 G C PPAP2C Missense_Mutation p.L97V 0.23 tolerated(0.5) benign(0.22) TCGA-94-8491-01 19 30936195 30936195 C G ZNF536 Missense_Mutation p.Q576E 0.26 tolerated(0.14) probably_damaging(0.966) TCGA-94-8491-01 19 32844786 32844786 G T ZNF507 Missense_Mutation p.Q350H 0.09 tolerated(0.13) benign(0.135) TCGA-94-8491-01 19 35434875 35434875 G C ZNF30 Missense_Mutation p.Q336H 0.08 tolerated(0.06) possibly_damaging(0.819) TCGA-94-8491-01 19 36219933 36219933 C T KMT2B Missense_Mutation p.R1579C 0.25 probably_damaging(0.973) TCGA-94-8491-01 19 37005586 37005586 G C ZNF260 Missense_Mutation p.I185M 0.26 deleterious(0.02) possibly_damaging(0.877) TCGA-94-8491-01 19 3728612 3728612 G A TJP3 Missense_Mutation p.R29Q 0.31 tolerated(0.07) possibly_damaging(0.538) TCGA-94-8491-01 19 37726472 37726472 G T ZNF383 Missense_Mutation p.V11L 0.05 deleterious(0.03) probably_damaging(0.996) TCGA-94-8491-01 19 38865445 38865445 G T PSMD8 Silent p.A68A 0.36 TCGA-94-8491-01 19 38931485 38931485 A G RYR1 Missense_Mutation p.E49G 0.26 probably_damaging(0.998) TCGA-94-8491-01 19 3939950 3939950 G C NMRK2 Missense_Mutation p.E126Q 0.24 tolerated(0.06) benign(0.434) TCGA-94-8491-01 19 39819040 39819040 G T GMFG 3'UTR 0.29 TCGA-94-8491-01 19 40580049 40580049 T C ZNF780A 3'UTR 0.09 TCGA-94-8491-01 19 41860888 41860888 G T B9D2 Missense_Mutation p.S82Y 0.23 tolerated(0.07) benign(0.014) TCGA-94-8491-01 19 45281186 45281186 C T CBLC 5'UTR 0.15 TCGA-94-8491-01 19 45815153 45815153 G A CKM Silent p.F169F 0.16 TCGA-94-8491-01 19 46294248 46294248 A C DMWD Missense_Mutation p.I180S 0.26 deleterious(0) possibly_damaging(0.507) TCGA-94-8491-01 19 47870258 47870259 GG T DHX34 Frame_Shift_Del p.D539Tfs*42 0.19 TCGA-94-8491-01 19 49355514 49355514 C G PLEKHA4 Missense_Mutation p.E466Q 0.22 tolerated(0.42) possibly_damaging(0.833) TCGA-94-8491-01 19 49636580 49636580 G C PPFIA3 Missense_Mutation p.L371F 0.06 deleterious(0) possibly_damaging(0.583) TCGA-94-8491-01 19 49812229 49812229 G T SLC6A16 Missense_Mutation p.S378Y 0.06 deleterious(0) possibly_damaging(0.871) TCGA-94-8491-01 19 5077377 5077377 G C KDM4B Splice_Site p.X226_splice 0.23 TCGA-94-8491-01 19 51021564 51021564 C - LRRC4B Frame_Shift_Del p.G469Afs*22 0.41 TCGA-94-8491-01 19 51226892 51226892 A T CLEC11A Missense_Mutation p.Q37L 0.55 tolerated_low_confidence(1) benign(0) TCGA-94-8491-01 19 51960896 51960896 C A SIGLEC8 Silent p.G184G 0.07 TCGA-94-8491-01 19 52002839 52002839 C A SIGLEC12 Missense_Mutation p.V314L 0.46 tolerated(1) benign(0.228) TCGA-94-8491-01 19 52023377 52023377 C A SIGLEC6 Missense_Mutation p.V441F 0.06 deleterious(0.04) benign(0.197) TCGA-94-8491-01 19 52660020 52660020 C G ZNF836 Missense_Mutation p.E306Q 0.14 deleterious(0.05) benign(0.007) TCGA-94-8491-01 19 52825733 52825733 A G ZNF480 Silent p.Q410Q 0.58 TCGA-94-8491-01 19 53015074 53015074 G T ZNF578 Missense_Mutation p.E480D 0.54 deleterious(0.03) benign(0.089) TCGA-94-8491-01 19 53056421 53056421 G T ZNF808 Silent p.V84V 0.04 TCGA-94-8491-01 19 53116778 53116778 C G ZNF83 Missense_Mutation p.C347S 0.06 deleterious(0) probably_damaging(0.999) TCGA-94-8491-01 19 54188310 54188310 G A MIR515-2 RNA 0.48 TCGA-94-8491-01 19 54304519 54304519 C T NLRP12 Silent p.E906E 0.06 TCGA-94-8491-01 19 54466486 54466486 C T CACNG8 Silent p.A30A 0.60 TCGA-94-8491-01 19 54759940 54759940 C A LILRB5 Silent p.S207S 0.08 TCGA-94-8491-01 19 54848336 54848336 C A LILRA4 Missense_Mutation p.C344F 0.21 deleterious(0) probably_damaging(0.998) TCGA-94-8491-01 19 55494369 55494369 A C NLRP2 Missense_Mutation p.S435R 0.09 tolerated(0.15) possibly_damaging(0.859) TCGA-94-8491-01 19 55785825 55785825 C T HSPBP1 Missense_Mutation p.R194Q 0.07 tolerated(0.56) benign(0.021) TCGA-94-8491-01 19 56244843 56244843 G A NLRP9 Silent p.H118H 0.18 TCGA-94-8491-01 19 56466428 56466428 G C NLRP8 Missense_Mutation p.R335T 0.20 deleterious(0) probably_damaging(0.999) TCGA-94-8491-01 19 56701560 56701560 C A ZSCAN5B Missense_Mutation p.R375M 0.27 deleterious(0) probably_damaging(0.985) TCGA-94-8491-01 19 57326258 57326258 G C PEG3 Missense_Mutation p.I1184M 0.04 tolerated(0.07) benign(0.42) TCGA-94-8491-01 19 5754233 5754233 C G CATSPERD Missense_Mutation p.P419A 0.22 tolerated(0.06) probably_damaging(0.909) TCGA-94-8491-01 19 57840117 57840117 A G ZNF543 Silent p.G429G 0.48 TCGA-94-8491-01 19 58849870 58849870 G C ZSCAN22 Missense_Mutation p.Q218H 0.04 tolerated(0.14) possibly_damaging(0.635) TCGA-94-8491-01 19 6227026 6227026 A C MLLT1 Missense_Mutation p.S170A 0.10 deleterious(0.04) benign(0.298) TCGA-94-8491-01 19 6306634 6306634 G T ACER1 3'UTR 0.23 TCGA-94-8491-01 19 7747331 7747331 C T CTD-3214H19.16 Missense_Mutation p.R124C 0.29 unknown(0) TCGA-94-8491-01 19 8553678 8553678 G T HNRNPM Missense_Mutation p.M711I 0.24 tolerated(0.52) possibly_damaging(0.511) TCGA-94-8491-01 19 8971701 8971701 G T MUC16 Nonsense_Mutation p.Y14297* 0.27 TCGA-94-8491-01 19 9073261 9073261 T A MUC16 Nonsense_Mutation p.K4729* 0.05 TCGA-94-8491-01 19 9075146 9075146 A T MUC16 Silent p.P4100P 0.28 TCGA-94-8491-01 19 9325134 9325134 C A OR7D4 Missense_Mutation p.C127F 0.21 deleterious(0) probably_damaging(0.999) TCGA-94-8491-01 19 9577255 9577255 G T ZNF560 Missense_Mutation p.H790N 0.19 deleterious(0.01) benign(0.002) TCGA-94-8491-01 19 9577430 9577430 C A ZNF560 Silent p.V731V 0.24 TCGA-94-8491-01 19 9730107 9730107 C T ZNF561 Splice_Site p.X9_splice 0.21 TCGA-94-8491-01 19 9768693 9768693 G T ZNF562 Missense_Mutation p.A78D 0.15 deleterious(0) possibly_damaging(0.457) TCGA-94-8491-01 1 10715754 10715754 G T CASZ1 Nonsense_Mutation p.Y539* 0.41 TCGA-94-8491-01 1 109836843 109836843 A C MYBPHL 3'UTR 0.07 TCGA-94-8491-01 1 110464611 110464611 G T CSF1 Missense_Mutation p.S180I 0.11 deleterious(0.02) benign(0.161) TCGA-94-8491-01 1 110919722 110919722 C T SLC16A4 Silent p.K364K 0.18 TCGA-94-8491-01 1 113217531 113217531 C G MOV10 5'UTR 0.07 TCGA-94-8491-01 1 1334454 1334454 C A CCNL2 Missense_Mutation p.R78L 0.18 deleterious(0.02) benign(0.102) TCGA-94-8491-01 1 144952238 144952238 G A PDE4DIP Missense_Mutation p.P161S 0.06 tolerated(0.39) benign(0.008) TCGA-94-8491-01 1 145281382 145281382 A G NOTCH2NL Silent p.Q104Q 0.07 TCGA-94-8491-01 1 151395981 151395981 C A POGZ Missense_Mutation p.G524C 0.24 deleterious(0) probably_damaging(1) TCGA-94-8491-01 1 152192756 152192756 G T HRNR Missense_Mutation p.S450Y 0.05 unknown(0) TCGA-94-8491-01 1 153633744 153633744 G C SNAPIN Silent p.S126S 0.09 TCGA-94-8491-01 1 154901630 154901630 C T PMVK Missense_Mutation p.R61K 0.08 tolerated(0.27) benign(0.042) TCGA-94-8491-01 1 155001803 155001803 G C DCST2 Silent p.L416L 0.07 TCGA-94-8491-01 1 158299647 158299647 C G CD1B Missense_Mutation p.R201T 0.24 deleterious(0) possibly_damaging(0.821) TCGA-94-8491-01 1 159557998 159557998 G T APCS Missense_Mutation p.A58S 0.22 tolerated(0.5) possibly_damaging(0.838) TCGA-94-8491-01 1 160523283 160523283 G A CD84 Silent p.I215I 0.22 TCGA-94-8491-01 1 16237774 16237774 A C SPEN Missense_Mutation p.E407D 0.47 probably_damaging(0.996) TCGA-94-8491-01 1 162749962 162749962 T G DDR2 Missense_Mutation p.W832G 0.25 deleterious(0) probably_damaging(1) TCGA-94-8491-01 1 165664566 165664566 C A ALDH9A1 Missense_Mutation p.A84S 0.18 tolerated(0.53) benign(0.004) TCGA-94-8491-01 1 167367342 167367342 G T POU2F1 Missense_Mutation p.R414L 0.23 deleterious(0.01) unknown(0) TCGA-94-8491-01 1 169701028 169701028 A T SELE Missense_Mutation p.N159K 0.10 deleterious(0.02) possibly_damaging(0.81) TCGA-94-8491-01 1 173569284 173569284 A C SLC9C2 Missense_Mutation p.I67R 0.35 deleterious(0) benign(0.398) TCGA-94-8491-01 1 173769566 173769566 C T CENPL 3'UTR 0.19 TCGA-94-8491-01 1 176525544 176525544 C A PAPPA2 Missense_Mutation p.T29K 0.09 tolerated_low_confidence(1) benign(0.02) TCGA-94-8491-01 1 176759074 176759074 C G PAPPA2 Missense_Mutation p.D1615E 0.22 deleterious(0.02) benign(0.08) TCGA-94-8491-01 1 181745281 181745281 C G CACNA1E Nonsense_Mutation p.Y1728* 0.04 TCGA-94-8491-01 1 182641969 182641969 C A RGS8 5'UTR 0.22 TCGA-94-8491-01 1 182763573 182763573 G A NPL Missense_Mutation p.G23R 0.23 deleterious(0.02) possibly_damaging(0.789) TCGA-94-8491-01 1 183511247 183511247 G C SMG7 Missense_Mutation p.L484F 0.05 deleterious(0.03) benign(0.398) TCGA-94-8491-01 1 19447698 19447698 C G UBR4 Missense_Mutation p.E3376Q 0.49 possibly_damaging(0.879) TCGA-94-8491-01 1 196254827 196254827 C A KCNT2 Missense_Mutation p.R886M 0.11 deleterious(0.01) possibly_damaging(0.625) TCGA-94-8491-01 1 197072522 197072522 C A ASPM Silent p.V1953V 0.21 TCGA-94-8491-01 1 197404086 197404086 T C CRB1 Silent p.D1031D 0.33 TCGA-94-8491-01 1 201060860 201060860 A T CACNA1S Missense_Mutation p.L201Q 0.39 deleterious(0) probably_damaging(0.987) TCGA-94-8491-01 1 201825006 201825006 G C IPO9 Missense_Mutation p.A356P 0.05 tolerated(0.14) benign(0.162) TCGA-94-8491-01 1 204513764 204513764 T A MDM4 Silent p.A258A 0.24 TCGA-94-8491-01 1 206765100 206765100 G C EIF2D 3'UTR 0.07 TCGA-94-8491-01 1 208219428 208219428 C T PLXNA2 Missense_Mutation p.C1097Y 0.06 deleterious(0) probably_damaging(0.993) TCGA-94-8491-01 1 21044053 21044061 GGGCGGCTC - KIF17 In_Frame_Del p.E47_P49del 0.14 TCGA-94-8491-01 1 214815471 214815471 T G CENPF Missense_Mutation p.C1264G 0.25 benign(0.085) TCGA-94-8491-01 1 21952890 21952890 C G RAP1GAP Missense_Mutation p.W27C 0.13 deleterious_low_confidence(0.03) benign(0.126) TCGA-94-8491-01 1 221057681 221057681 A G HLX Missense_Mutation p.S368G 0.31 deleterious(0.03) benign(0.058) TCGA-94-8491-01 1 227288786 227288786 T A CDC42BPA Missense_Mutation p.K719M 0.38 deleterious(0) probably_damaging(0.919) TCGA-94-8491-01 1 234565317 234565317 G C TARBP1 Missense_Mutation p.L906V 0.24 tolerated(0.24) benign(0.011) TCGA-94-8491-01 1 241951290 241951290 A T WDR64 Missense_Mutation p.T939S 0.05 tolerated(0.05) benign(0.146) TCGA-94-8491-01 1 244816642 244816642 C G DESI2 Silent p.L9L 0.11 TCGA-94-8491-01 1 247264607 247264607 T G ZNF669 Missense_Mutation p.Q155P 0.23 deleterious(0.01) benign(0.288) TCGA-94-8491-01 1 247654732 247654732 C A OR2W5 RNA 0.23 TCGA-94-8491-01 1 247921258 247921259 - A OR1C1 Frame_Shift_Ins p.V151Cfs*30 0.24 TCGA-94-8491-01 1 248551640 248551640 A T OR2T6 Missense_Mutation p.H244L 0.35 deleterious(0) probably_damaging(1) TCGA-94-8491-01 1 248616140 248616140 C A OR2T2 Silent p.V14V 0.09 TCGA-94-8491-01 1 248685523 248685523 G T OR2G6 Silent p.T192T 0.20 TCGA-94-8491-01 1 248756504 248756504 C G OR2T10 Missense_Mutation p.C189S 0.21 deleterious(0) probably_damaging(1) TCGA-94-8491-01 1 26135106 26135106 G T SEPN1 Missense_Mutation p.W191C 0.22 deleterious(0) probably_damaging(0.999) TCGA-94-8491-01 1 26372483 26372509 CCCCGAGGGCCCCGCGAGGTGCGCTCA - SLC30A2 5'UTR 0.48 TCGA-94-8491-01 1 26888087 26888087 C G RPS6KA1 Nonsense_Mutation p.S517* 0.34 TCGA-94-8491-01 1 32636425 32636425 A C KPNA6 Missense_Mutation p.Q514P 0.30 tolerated(0.15) benign(0.001) TCGA-94-8491-01 1 33147453 33147453 A G SYNC Nonstop_Mutation p.*483Qext*16 0.05 TCGA-94-8491-01 1 34554692 34554692 G T CSMD2 Missense_Mutation p.T57N 0.24 deleterious(0.03) benign(0.405) TCGA-94-8491-01 1 36056276 36056276 G A TFAP2E Missense_Mutation p.E316K 0.07 deleterious(0.01) possibly_damaging(0.518) TCGA-94-8491-01 1 36282508 36282508 A T AGO4 Silent p.P15P 0.29 TCGA-94-8491-01 1 38280786 38280786 G C MTF1 3'UTR 0.28 TCGA-94-8491-01 1 40961697 40961697 T A ZFP69 Missense_Mutation p.I516K 0.34 deleterious(0) probably_damaging(0.921) TCGA-94-8491-01 1 43223532 43223532 G C LEPRE1 Missense_Mutation p.D334E 0.11 tolerated(0.06) possibly_damaging(0.829) TCGA-94-8491-01 1 43897450 43897450 C G SZT2 Missense_Mutation p.P1661A 0.21 tolerated(0.89) benign(0.001) TCGA-94-8491-01 1 45295087 45295087 C A PTCH2 Missense_Mutation p.G401V 0.10 deleterious(0) probably_damaging(0.995) TCGA-94-8491-01 1 55183233 55183233 A C TTC4 Missense_Mutation p.I100L 0.16 tolerated(0.37) benign(0.002) TCGA-94-8491-01 1 6696307 6696307 C T DNAJC11 Splice_Site p.X509_splice 0.08 TCGA-94-8491-01 1 67292582 67292582 C A WDR78 Missense_Mutation p.A754S 0.25 tolerated(0.56) benign(0.023) TCGA-94-8491-01 1 75097498 75097498 G T C1orf173 Missense_Mutation p.P240T 0.33 deleterious(0.01) benign(0.008) TCGA-94-8491-01 1 75114937 75114937 C T C1orf173 Missense_Mutation p.R29K 0.16 deleterious(0) probably_damaging(0.998) TCGA-94-8491-01 1 76198327 76198327 A G ACADM Splice_Site p.X44_splice 0.23 TCGA-94-8491-01 1 77510124 77510124 C A ST6GALNAC5 Missense_Mutation p.T166N 0.25 probably_damaging(0.966) TCGA-94-8491-01 1 77510125 77510125 C A ST6GALNAC5 Silent p.T166T 0.24 TCGA-94-8491-01 1 84874142 84874142 T C DNASE2B Missense_Mutation p.I109T 0.23 deleterious(0) possibly_damaging(0.827) TCGA-94-8491-01 1 87207992 87207992 G C SH3GLB1 Missense_Mutation p.S309T 0.27 tolerated(0.25) benign(0.004) TCGA-94-8491-01 1 89733206 89733206 C T GBP5 Missense_Mutation p.D108N 0.23 tolerated(0.07) benign(0.06) TCGA-94-8491-01 1 93169026 93169026 T C EVI5 Missense_Mutation p.R208G 0.11 deleterious(0) probably_damaging(1) TCGA-94-8491-01 1 93201959 93201959 T C EVI5 Missense_Mutation p.N93D 0.08 deleterious(0) possibly_damaging(0.697) TCGA-94-8491-01 20 20278954 20278954 T A C20orf26 Missense_Mutation p.L1116M 0.06 deleterious(0) probably_damaging(0.992) TCGA-94-8491-01 20 25259747 25259747 C A PYGB Silent p.R352R 0.30 TCGA-94-8491-01 20 33632359 33632359 G C TRPC4AP Missense_Mutation p.Q272E 0.28 tolerated(0.18) benign(0.08) TCGA-94-8491-01 20 43850414 43850414 C T SEMG2 Silent p.H47H 0.10 TCGA-94-8491-01 20 44528155 44528155 C G PLTP Missense_Mutation p.Q435H 0.14 tolerated(0.07) benign(0.078) TCGA-94-8491-01 20 49509739 49509739 G A ADNP Silent p.L504L 0.11 TCGA-94-8491-01 20 50407963 50407963 T C SALL4 Silent p.L353L 0.07 TCGA-94-8491-01 20 5294659 5294660 - AGCTGC PROKR2 In_Frame_Ins p.Q118_L119dup 0.34 TCGA-94-8491-01 20 5566854 5566854 G C GPCPD1 Nonsense_Mutation p.S98* 0.28 TCGA-94-8491-01 20 60708532 60708532 G C LSM14B Splice_Site 0.38 TCGA-94-8491-01 20 62331998 62331998 G C ARFRP1 Missense_Mutation p.I158M 0.14 tolerated(0.11) possibly_damaging(0.61) TCGA-94-8491-01 21 10920156 10920156 C A TPTE Silent p.L366L 0.23 TCGA-94-8491-01 21 19653389 19653389 A T TMPRSS15 Missense_Mutation p.M879K 0.27 deleterious(0) possibly_damaging(0.593) TCGA-94-8491-01 21 28296628 28296628 C T ADAMTS5 Missense_Mutation p.R846H 0.09 deleterious(0.01) benign(0.411) TCGA-94-8491-01 21 31852470 31852470 C G KRTAP19-1 Missense_Mutation p.G56A 0.03 tolerated_low_confidence(1) unknown(0) TCGA-94-8491-01 21 32624162 32624162 T C TIAM1 Missense_Mutation p.K436R 0.43 tolerated(0.2) probably_damaging(0.932) TCGA-94-8491-01 21 34904677 34904677 A T GART Missense_Mutation p.C168S 0.06 deleterious(0.03) probably_damaging(1) TCGA-94-8491-01 21 35260601 35260601 G A ITSN1 Silent p.P1721P 0.52 TCGA-94-8491-01 21 42812868 42812868 G T MX1 Missense_Mutation p.V216L 0.36 deleterious(0) probably_damaging(0.914) TCGA-94-8491-01 21 43536069 43536069 G C UMODL1 Missense_Mutation p.D945H 0.08 tolerated(0.08) probably_damaging(0.934) TCGA-94-8491-01 22 16277677 16277677 T G POTEH Intron 0.41 TCGA-94-8491-01 22 17446093 17446093 C A GAB4 Missense_Mutation p.V452F 0.26 deleterious(0) benign(0.142) TCGA-94-8491-01 22 18368816 18368816 T C MICAL3 Missense_Mutation p.E690G 0.24 possibly_damaging(0.468) TCGA-94-8491-01 22 20103974 20103974 G T TRMT2A Nonsense_Mutation p.Y62* 0.05 TCGA-94-8491-01 22 21068815 21068815 C A PI4KA Missense_Mutation p.A1798S 0.25 deleterious(0) probably_damaging(0.912) TCGA-94-8491-01 22 21213342 21213342 G C SNAP29 5'UTR 0.18 TCGA-94-8491-01 22 30069294 30069294 A G NF2 Missense_Mutation p.K387E 0.23 deleterious(0.04) possibly_damaging(0.845) TCGA-94-8491-01 22 33245500 33245500 C A TIMP3 Silent p.V61V 0.17 TCGA-94-8491-01 22 36876786 36876786 C A TXN2 Missense_Mutation p.Q33H 0.34 tolerated(0.25) benign(0.002) TCGA-94-8491-01 22 41257861 41257861 G C DNAJB7 Missense_Mutation p.F46L 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-94-8491-01 22 41545115 41545115 C T EP300 Missense_Mutation p.S772L 0.08 unknown(0) TCGA-94-8491-01 22 42522536 42522536 C A CYP2D6 3'UTR 0.24 TCGA-94-8491-01 22 46761156 46761156 G C CELSR1 Silent p.A2842A 0.10 TCGA-94-8491-01 2 112838987 112838987 G C TMEM87B Missense_Mutation p.D244H 0.26 deleterious(0) probably_damaging(1) TCGA-94-8491-01 2 113832760 113832760 G T IL1F10 Missense_Mutation p.G93V 0.26 tolerated(0.07) probably_damaging(0.986) TCGA-94-8491-01 2 11758787 11758787 C G GREB1 Silent p.P1262P 0.17 TCGA-94-8491-01 2 11772126 11772126 C T GREB1 Missense_Mutation p.A1568V 0.20 tolerated(0.13) possibly_damaging(0.8) TCGA-94-8491-01 2 11922580 11922580 C A LPIN1 Missense_Mutation p.S453Y 0.15 tolerated(0.06) benign(0.007) TCGA-94-8491-01 2 120690097 120690097 T C PTPN4 Missense_Mutation p.S390P 0.17 deleterious(0.02) possibly_damaging(0.47) TCGA-94-8491-01 2 128631842 128631842 G A AMMECR1L 5'UTR 0.17 TCGA-94-8491-01 2 128750812 128750812 G A SAP130 Missense_Mutation p.H502Y 0.31 deleterious_low_confidence(0) possibly_damaging(0.747) TCGA-94-8491-01 2 131487447 131487447 G T GPR148 Missense_Mutation p.R241S 0.22 deleterious(0.01) possibly_damaging(0.575) TCGA-94-8491-01 2 131519797 131519797 A G AMER3 Missense_Mutation p.K51R 0.38 tolerated(0.65) benign(0.006) TCGA-94-8491-01 2 138414718 138414718 G A THSD7B Missense_Mutation p.V1458I 0.18 tolerated(1) unknown(0) TCGA-94-8491-01 2 141116476 141116476 C T LRP1B Missense_Mutation p.R3724K 0.27 benign(0.067) TCGA-94-8491-01 2 141245269 141245269 C G LRP1B Missense_Mutation p.E3054Q 0.14 benign(0.403) TCGA-94-8491-01 2 163693156 163693156 G T KCNH7 Nonsense_Mutation p.C66* 0.08 TCGA-94-8491-01 2 167262803 167262803 T G SCN7A Missense_Mutation p.S1446R 0.10 deleterious(0.04) probably_damaging(0.954) TCGA-94-8491-01 2 171055762 171055762 G A MYO3B Missense_Mutation p.G16E 0.17 tolerated(0.46) benign(0.025) TCGA-94-8491-01 2 172965671 172965671 A C DLX2 Missense_Mutation p.V196G 0.49 deleterious(0) probably_damaging(0.998) TCGA-94-8491-01 2 179439593 179439593 C G TTN Missense_Mutation p.G23756R 0.53 TCGA-94-8491-01 2 179448375 179448375 G T TTN Missense_Mutation p.P21845H 0.47 TCGA-94-8491-01 2 179455751 179455751 G T TTN Missense_Mutation p.P20234Q 0.53 TCGA-94-8491-01 2 179455752 179455752 G T TTN Missense_Mutation p.P20234T 0.53 TCGA-94-8491-01 2 179542581 179542581 A T TTN Missense_Mutation p.F11353Y 0.53 TCGA-94-8491-01 2 179636143 179636143 A T TTN Silent p.A2637A 0.28 TCGA-94-8491-01 2 180309677 180309677 G C ZNF385B Missense_Mutation p.R375G 0.07 deleterious(0) probably_damaging(0.948) TCGA-94-8491-01 2 208988866 208988866 G T CRYGD Missense_Mutation p.D74E 0.39 deleterious(0.02) benign(0.13) TCGA-94-8491-01 2 209215545 209215545 G T PIKFYVE Nonsense_Mutation p.E1829* 0.32 TCGA-94-8491-01 2 220406308 220406308 A T CHPF Intron 0.43 TCGA-94-8491-01 2 224831757 224831757 A T MRPL44 3'UTR 0.35 TCGA-94-8491-01 2 233408048 233408048 T A CHRNG Missense_Mutation p.L290H 0.07 deleterious(0) probably_damaging(0.999) TCGA-94-8491-01 2 235404864 235404864 G C ARL4C Missense_Mutation p.L123V 0.11 tolerated(0.14) probably_damaging(0.944) TCGA-94-8491-01 2 237489944 237489944 T C ACKR3 Missense_Mutation p.I279T 0.06 tolerated(0.3) benign(0.102) TCGA-94-8491-01 2 241702615 241702615 C G KIF1A Missense_Mutation p.Q639H 0.42 deleterious(0.02) benign(0.068) TCGA-94-8491-01 2 242795029 242795029 C A PDCD1 Silent p.S60S 0.33 TCGA-94-8491-01 2 25505437 25505437 A C DNMT3A Silent p.A107A 0.16 TCGA-94-8491-01 2 27676554 27676554 C T IFT172 Missense_Mutation p.S1255N 0.08 tolerated(0.46) benign(0.002) TCGA-94-8491-01 2 29022103 29022103 T A PPP1CB Nonsense_Mutation p.Y306* 0.07 TCGA-94-8491-01 2 33487843 33487843 C G LTBP1 Missense_Mutation p.L825V 0.10 tolerated(0.13) benign(0.134) TCGA-94-8491-01 2 44471383 44471383 C A snoU13 5'Flank 0.36 TCGA-94-8491-01 2 46412011 46412011 G C PRKCE Silent p.L735L 0.14 TCGA-94-8491-01 2 50724738 50724738 C T NRXN1 Missense_Mutation p.S911N 0.12 tolerated(0.26) benign(0.007) TCGA-94-8491-01 2 54135494 54135494 T C PSME4 Missense_Mutation p.K916R 0.19 deleterious(0.03) benign(0.222) TCGA-94-8491-01 2 60997599 60997599 G A PAPOLG Missense_Mutation p.E149K 0.14 deleterious(0.02) benign(0.135) TCGA-94-8491-01 2 61149298 61149298 G A REL Silent p.V496V 0.06 TCGA-94-8491-01 2 69034496 69034496 G C ARHGAP25 Missense_Mutation p.E186D 0.17 tolerated(0.62) benign(0.072) TCGA-94-8491-01 2 70524339 70524339 T A FAM136A 3'UTR 0.53 TCGA-94-8491-01 2 7164522 7164522 G T RNF144A Missense_Mutation p.D178Y 0.14 deleterious(0) possibly_damaging(0.828) TCGA-94-8491-01 2 72968456 72968456 T C EXOC6B Missense_Mutation p.R86G 0.06 deleterious(0) possibly_damaging(0.619) TCGA-94-8491-01 2 73195591 73195591 C T SFXN5 Missense_Mutation p.M271I 0.06 deleterious(0.01) possibly_damaging(0.811) TCGA-94-8491-01 2 74041073 74041073 A T C2orf78 Silent p.T189T 0.21 TCGA-94-8491-01 2 74732486 74732486 G C PCGF1 Missense_Mutation p.L238V 0.40 tolerated(0.96) benign(0.232) TCGA-94-8491-01 2 75116495 75116495 C T HK2 Silent p.L833L 0.12 TCGA-94-8491-01 2 79253907 79253908 TC A REG3G Frame_Shift_Del p.S49Tfs*44 0.14 TCGA-94-8491-01 2 89156782 89156782 A G IGKC 3'UTR 0.28 TCGA-94-8491-01 2 90109072 90109072 A G IGKV6D-41 Missense_Mutation p.K113E 0.25 tolerated(0.15) benign(0.004) TCGA-94-8491-01 2 90260054 90260054 A T IGKV1D-8 Missense_Mutation p.S53C 0.25 deleterious(0) possibly_damaging(0.757) TCGA-94-8491-01 2 99860357 99860357 C A LYG2 Intron 0.21 TCGA-94-8491-01 3 108195263 108195263 C G MYH15 Missense_Mutation p.R425T 0.25 deleterious(0.01) possibly_damaging(0.822) TCGA-94-8491-01 3 113514020 113514020 G T ATP6V1A Nonsense_Mutation p.E399* 0.21 TCGA-94-8491-01 3 113850192 113850192 T A DRD3 Missense_Mutation p.Q260L 0.23 tolerated(0.29) benign(0.444) TCGA-94-8491-01 3 119367368 119367368 C G POPDC2 Missense_Mutation p.D250H 0.12 deleterious(0.04) benign(0.25) TCGA-94-8491-01 3 120122195 120122195 G C FSTL1 Silent p.L196L 0.27 TCGA-94-8491-01 3 121212433 121212433 T A POLQ Missense_Mutation p.Q805L 0.26 deleterious(0.05) benign(0.051) TCGA-94-8491-01 3 122641232 122641232 C T SEMA5B Silent p.A499A 0.23 TCGA-94-8491-01 3 122942522 122942522 T C SEC22A Missense_Mutation p.M100T 0.24 tolerated(1) benign(0) TCGA-94-8491-01 3 123003520 123003520 C G ADCY5 Missense_Mutation p.V1241L 0.09 deleterious(0) possibly_damaging(0.718) TCGA-94-8491-01 3 133099895 133099895 T C TMEM108 Missense_Mutation p.I447T 0.26 deleterious(0.01) probably_damaging(0.985) TCGA-94-8491-01 3 137799452 137799452 C A DZIP1L Missense_Mutation p.K415N 0.23 tolerated(0.08) benign(0.018) TCGA-94-8491-01 3 138187005 138187005 C T ESYT3 Missense_Mutation p.S426L 0.10 deleterious(0) benign(0.309) TCGA-94-8491-01 3 139237283 139237283 C G RBP1 Missense_Mutation p.E174Q 0.05 tolerated(0.1) benign(0.342) TCGA-94-8491-01 3 145788499 145788499 A G PLOD2 3'UTR 0.24 TCGA-94-8491-01 3 147128562 147128562 C G ZIC1 Missense_Mutation p.I221M 0.31 deleterious(0) probably_damaging(0.97) TCGA-94-8491-01 3 148925275 148925275 A C CP Missense_Mutation p.L304R 0.04 deleterious(0) probably_damaging(0.992) TCGA-94-8491-01 3 154886330 154886330 G A MME Silent p.Q610Q 0.23 TCGA-94-8491-01 3 157823794 157823794 A G SHOX2 Missense_Mutation p.F7S 0.04 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-94-8491-01 3 160146653 160146653 T C SMC4 Silent p.L906L 0.14 TCGA-94-8491-01 3 183774741 183774741 G A HTR3C Missense_Mutation p.M156I 0.13 deleterious(0.03) benign(0.033) TCGA-94-8491-01 3 184041674 184041674 T G EIF4G1 Missense_Mutation p.L801R 0.16 deleterious(0) probably_damaging(0.988) TCGA-94-8491-01 3 184094071 184094071 G A THPO 5'UTR 0.17 TCGA-94-8491-01 3 185641744 185641744 C G TRA2B Missense_Mutation p.G121A 0.10 deleterious(0.03) probably_damaging(0.98) TCGA-94-8491-01 3 186334246 186334246 C T AHSG Silent p.D113D 0.34 TCGA-94-8491-01 3 186959306 186959306 A T MASP1 Missense_Mutation p.N422K 0.05 deleterious(0.01) probably_damaging(0.972) TCGA-94-8491-01 3 193151633 193151633 C T ATP13A4 Splice_Site p.X948_splice 0.06 TCGA-94-8491-01 3 194063060 194063060 G - CPN2 Frame_Shift_Del p.K125Sfs*44 0.18 TCGA-94-8491-01 3 21465537 21465537 T A ZNF385D Missense_Mutation p.H291L 0.07 deleterious(0) probably_damaging(0.954) TCGA-94-8491-01 3 38646275 38646275 T C SCN5A Missense_Mutation p.E488G 0.11 tolerated(0.08) benign(0.366) TCGA-94-8491-01 3 42793443 42793443 C A CCDC13 Missense_Mutation p.M196I 0.36 tolerated(0.41) benign(0.004) TCGA-94-8491-01 3 42793444 42793444 A T CCDC13 Missense_Mutation p.M196K 0.35 tolerated(0.74) benign(0.076) TCGA-94-8491-01 3 49153535 49153535 G T USP19 Nonsense_Mutation p.C472* 0.30 TCGA-94-8491-01 3 49699812 49699812 G A BSN Missense_Mutation p.G3512R 0.49 unknown(0) TCGA-94-8491-01 3 52597303 52597303 G - PBRM1 Intron 0.25 TCGA-94-8491-01 3 58410504 58410504 T C PXK Silent p.P518P 0.11 TCGA-94-8491-01 3 62478104 62478104 T C CADPS Silent p.S915S 0.37 TCGA-94-8491-01 3 71064782 71064782 G - FOXP1 Frame_Shift_Del p.H300Ifs*27 0.25 TCGA-94-8491-01 3 89480306 89480306 G T EPHA3 Missense_Mutation p.D715Y 0.33 deleterious(0) probably_damaging(1) TCGA-94-8491-01 3 95374161 95374161 A T MTHFD2P1 RNA 0.09 TCGA-94-8491-01 3 97983166 97983166 G A OR5H6 Missense_Mutation p.C13Y 0.16 tolerated_low_confidence(0.65) benign(0.011) TCGA-94-8491-01 3 98002143 98002143 C T OR5H2 Missense_Mutation p.P138S 0.11 tolerated(0.05) benign(0.115) TCGA-94-8491-01 4 100504738 100504738 A G MTTP Intron 0.21 TCGA-94-8491-01 4 113352083 113352083 A G ALPK1 Silent p.S460S 0.16 TCGA-94-8491-01 4 1161110 1161110 C A SPON2 3'UTR 0.46 TCGA-94-8491-01 4 119475279 119475279 C T CEP170P1 RNA 0.42 TCGA-94-8491-01 4 123165183 123165183 G C KIAA1109 Splice_Site p.X1639_splice 0.07 TCGA-94-8491-01 4 124503 124503 G A ZNF718 RNA 0.27 TCGA-94-8491-01 4 147561480 147561480 C G POU4F2 Missense_Mutation p.D250E 0.30 tolerated(0.2) probably_damaging(0.991) TCGA-94-8491-01 4 151821366 151821366 G C LRBA Missense_Mutation p.Q587E 0.05 deleterious(0) probably_damaging(0.974) TCGA-94-8491-01 4 154519821 154519821 C A KIAA0922 Missense_Mutation p.P735T 0.10 deleterious(0) probably_damaging(1) TCGA-94-8491-01 4 154709490 154709490 C A SFRP2 Missense_Mutation p.E166D 0.20 tolerated(0.35) benign(0.054) TCGA-94-8491-01 4 156710966 156710966 T C GUCY1B3 Missense_Mutation p.L133S 0.38 deleterious(0) probably_damaging(0.971) TCGA-94-8491-01 4 158257695 158257695 G - GRIA2 Frame_Shift_Del p.W547* 0.24 TCGA-94-8491-01 4 162307486 162307486 C G FSTL5 Missense_Mutation p.A653P 0.30 deleterious(0.01) probably_damaging(0.991) TCGA-94-8491-01 4 167022082 167022082 A G TLL1 3'UTR 0.18 TCGA-94-8491-01 4 175604011 175604011 G T GLRA3 Silent p.P218P 0.37 TCGA-94-8491-01 4 17964624 17964624 G T LCORL Nonsense_Mutation p.S90* 0.16 TCGA-94-8491-01 4 183713831 183713831 G T TENM3 Missense_Mutation p.R2002S 0.28 tolerated(0.06) possibly_damaging(0.587) TCGA-94-8491-01 4 24556539 24556539 C A DHX15 Missense_Mutation p.A297S 0.16 deleterious(0.02) benign(0.319) TCGA-94-8491-01 4 39116984 39116984 C T KLHL5 Intron 0.17 TCGA-94-8491-01 4 41648138 41648138 A G LIMCH1 Splice_Site p.X367_splice 0.22 TCGA-94-8491-01 4 46067499 46067499 T A GABRG1 Nonsense_Mutation p.K142* 0.13 TCGA-94-8491-01 4 47938695 47938695 C G CNGA1 Missense_Mutation p.D675H 0.09 deleterious(0) probably_damaging(1) TCGA-94-8491-01 4 48990520 48990520 G C CWH43 Missense_Mutation p.D24H 0.22 deleterious(0) possibly_damaging(0.694) TCGA-94-8491-01 4 5841389 5841389 T C CRMP1 Silent p.G390G 0.22 TCGA-94-8491-01 4 59379 59379 T A ZNF595 Nonsense_Mutation p.C20* 0.04 TCGA-94-8491-01 4 69403549 69403549 A C UGT2B17 Missense_Mutation p.F463V 0.04 deleterious(0) probably_damaging(0.994) TCGA-94-8491-01 4 69978515 69978515 C T UGT2B7 3'UTR 0.30 TCGA-94-8491-01 4 70079802 70079802 A G UGT2B11 Silent p.N213N 0.19 TCGA-94-8491-01 4 71024296 71024296 C T C4orf40 Silent p.F109F 0.06 TCGA-94-8491-01 4 72338579 72338579 G T SLC4A4 Missense_Mutation p.D599Y 0.20 deleterious(0) probably_damaging(1) TCGA-94-8491-01 4 7731360 7731360 G A SORCS2 Missense_Mutation p.G1010E 0.35 deleterious(0) probably_damaging(0.978) TCGA-94-8491-01 4 84388634 84388638 CATTT - FAM175A Frame_Shift_Del p.E217Vfs*19 0.24 TCGA-94-8491-01 4 86938302 86938302 G A MAPK10 3'UTR 0.30 TCGA-94-8491-01 4 961379 961379 G C DGKQ Silent p.R315R 0.16 TCGA-94-8491-01 5 112384648 112384648 T C MCC Intron 0.54 TCGA-94-8491-01 5 115152245 115152245 G C CDO1 5'UTR 0.33 TCGA-94-8491-01 5 132159544 132159544 T A SHROOM1 Silent p.P603P 0.35 TCGA-94-8491-01 5 132652258 132652258 C G FSTL4 Missense_Mutation p.D166H 0.07 tolerated(0.07) possibly_damaging(0.519) TCGA-94-8491-01 5 140166059 140166059 C T PCDHA1 Missense_Mutation p.R62C 0.44 deleterious_low_confidence(0) probably_damaging(0.924) TCGA-94-8491-01 5 140208944 140208944 T A PCDHA6 Nonsense_Mutation p.L423* 0.40 TCGA-94-8491-01 5 140222774 140222774 G A PCDHA8 Missense_Mutation p.R623H 0.42 deleterious_low_confidence(0.01) benign(0.152) TCGA-94-8491-01 5 140222891 140222891 C T PCDHA8 Missense_Mutation p.T662M 0.44 deleterious_low_confidence(0.03) probably_damaging(0.981) TCGA-94-8491-01 5 140554313 140554313 C A PCDHB7 Missense_Mutation p.R633S 0.18 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-94-8491-01 5 150076226 150076226 C T RBM22 Silent p.G138G 0.39 TCGA-94-8491-01 5 150856178 150856178 G A SLC36A1 Missense_Mutation p.D284N 0.13 tolerated(0.56) benign(0.005) TCGA-94-8491-01 5 167645261 167645261 C A TENM2 Missense_Mutation p.H1455Q 0.03 deleterious(0) possibly_damaging(0.811) TCGA-94-8491-01 5 171326039 171326039 G C FBXW11 Nonsense_Mutation p.S207* 0.48 TCGA-94-8491-01 5 175110817 175110817 C A HRH2 Missense_Mutation p.P194Q 0.65 deleterious(0) probably_damaging(1) TCGA-94-8491-01 5 179260154 179260154 C T SQSTM1 Missense_Mutation p.P293S 0.06 tolerated(0.64) benign(0.002) TCGA-94-8491-01 5 23524525 23524525 C G PRDM9 Missense_Mutation p.R345G 0.25 deleterious(0) benign(0.159) TCGA-94-8491-01 5 23524526 23524526 G A PRDM9 Missense_Mutation p.R345Q 0.26 tolerated(0.22) benign(0.1) TCGA-94-8491-01 5 31323089 31323089 A G CDH6 Missense_Mutation p.I683V 0.33 tolerated(0.22) benign(0.086) TCGA-94-8491-01 5 31472221 31472221 C A DROSHA Missense_Mutation p.W730C 0.29 deleterious(0) possibly_damaging(0.562) TCGA-94-8491-01 5 35874597 35874597 C T IL7R Silent p.F251F 0.06 TCGA-94-8491-01 5 35876641 35876641 G A IL7R 3'UTR 0.39 TCGA-94-8491-01 5 37173904 37173904 C A C5orf42 Nonsense_Mutation p.E2042* 0.34 TCGA-94-8491-01 5 37179517 37179517 G C C5orf42 Missense_Mutation p.F1922L 0.24 tolerated(0.97) benign(0) TCGA-94-8491-01 5 37328482 37328482 G C NUP155 Silent p.S618S 0.30 TCGA-94-8491-01 5 39382944 39382944 G A DAB2 Missense_Mutation p.P373S 0.31 tolerated(0.29) benign(0.081) TCGA-94-8491-01 5 41153917 41153917 T C C6 Missense_Mutation p.E762G 0.29 tolerated(0.08) benign(0.01) TCGA-94-8491-01 5 45645450 45645450 G C HCN1 Missense_Mutation p.S229C 0.22 deleterious(0) probably_damaging(0.998) TCGA-94-8491-01 5 5306764 5306764 C T ADAMTS16 Missense_Mutation p.L1112F 0.06 tolerated(0.32) benign(0) TCGA-94-8491-01 5 59899291 59899291 T A DEPDC1B Missense_Mutation p.Q390L 0.07 deleterious(0.01) benign(0.119) TCGA-94-8491-01 5 61694352 61694352 A C DIMT1 Missense_Mutation p.H144Q 0.31 tolerated(0.13) probably_damaging(0.955) TCGA-94-8491-01 5 619172 619172 G A CEP72 Silent p.L50L 0.08 TCGA-94-8491-01 5 79034280 79034280 A G CMYA5 Missense_Mutation p.D3231G 0.39 probably_damaging(0.965) TCGA-94-8491-01 5 79616665 79616665 G T SPZ1 Missense_Mutation p.V211L 0.23 tolerated(0.13) possibly_damaging(0.606) TCGA-94-8491-01 5 850560 850560 G C ZDHHC11 Missense_Mutation p.S53C 0.05 deleterious(0.04) benign(0.04) TCGA-94-8491-01 5 914628 914628 G C TRIP13 Missense_Mutation p.E357Q 0.28 tolerated(0.15) benign(0.027) TCGA-94-8491-01 6 10410408 10410408 G C TFAP2A Missense_Mutation p.S69W 0.36 tolerated(0.09) probably_damaging(1) TCGA-94-8491-01 6 110763681 110763681 C - SLC22A16 Frame_Shift_Del p.A317Qfs*48 0.23 TCGA-94-8491-01 6 111887717 111887717 T C TRAF3IP2 Missense_Mutation p.D469G 0.29 deleterious(0) probably_damaging(1) TCGA-94-8491-01 6 114277310 114277310 C A HDAC2 Missense_Mutation p.A122S 0.18 deleterious(0.04) possibly_damaging(0.682) TCGA-94-8491-01 6 123892124 123892124 G T TRDN Missense_Mutation p.T59K 0.31 deleterious_low_confidence(0) possibly_damaging(0.625) TCGA-94-8491-01 6 132270419 132270419 G T CTGF Nonsense_Mutation p.Y345* 0.06 TCGA-94-8491-01 6 146350810 146350810 G T GRM1 Missense_Mutation p.V53F 0.04 deleterious(0) probably_damaging(0.98) TCGA-94-8491-01 6 149997494 149997494 G A LATS1 Nonsense_Mutation p.Q929* 0.48 TCGA-94-8491-01 6 149997495 149997495 T A LATS1 Silent p.T928T 0.49 TCGA-94-8491-01 6 152706973 152706973 C A SYNE1 Nonsense_Mutation p.E2830* 0.57 TCGA-94-8491-01 6 152706974 152706974 C A SYNE1 Splice_Site p.X2830_splice 0.56 TCGA-94-8491-01 6 152708505 152708505 G C SYNE1 Missense_Mutation p.S2730C 0.07 possibly_damaging(0.678) TCGA-94-8491-01 6 155774597 155774597 T A NOX3 Missense_Mutation p.Q94L 0.05 tolerated(0.26) probably_damaging(0.975) TCGA-94-8491-01 6 157528355 157528355 C G ARID1B Missense_Mutation p.T2027R 0.08 probably_damaging(0.998) TCGA-94-8491-01 6 161469858 161469858 A G MAP3K4 Missense_Mutation p.N185S 0.09 tolerated(0.38) benign(0.184) TCGA-94-8491-01 6 167570473 167570473 A C GPR31 Missense_Mutation p.C283G 0.05 tolerated(0.05) benign(0.248) TCGA-94-8491-01 6 170154032 170154032 C G ERMARD Missense_Mutation p.Q27E 0.77 tolerated(1) benign(0) TCGA-94-8491-01 6 24559253 24559253 C A KIAA0319 Missense_Mutation p.V908F 0.27 deleterious(0) benign(0.439) TCGA-94-8491-01 6 26598978 26598978 G C ABT1 3'UTR 0.56 TCGA-94-8491-01 6 29640994 29640994 T C ZFP57 Silent p.P298P 0.04 TCGA-94-8491-01 6 29976131 29976131 G A ZNRD1-AS1 Intron 0.06 TCGA-94-8491-01 6 30550255 30550255 A C ABCF1 Missense_Mutation p.K255Q 0.43 deleterious(0.02) possibly_damaging(0.703) TCGA-94-8491-01 6 30919958 30919958 A G DPCR1 Silent p.T1239T 0.50 TCGA-94-8491-01 6 31118738 31118738 C G CCHCR1 Silent p.L321L 0.49 TCGA-94-8491-01 6 32096641 32096641 G T FKBPL Missense_Mutation p.T306N 0.51 tolerated(0.34) benign(0.328) TCGA-94-8491-01 6 33690821 33690821 C A IP6K3 Silent p.L303L 0.29 TCGA-94-8491-01 6 35547827 35547827 C G FKBP5 Missense_Mutation p.E338Q 0.46 deleterious(0.01) benign(0.127) TCGA-94-8491-01 6 35705910 35705910 G A ARMC12 Silent p.L117L 0.53 TCGA-94-8491-01 6 39867909 39867909 C T DAAM2 Silent p.V912V 0.62 TCGA-94-8491-01 6 41000723 41000723 G C UNC5CL Missense_Mutation p.N283K 0.20 tolerated(0.13) possibly_damaging(0.492) TCGA-94-8491-01 6 43413550 43413550 C T ABCC10 Nonsense_Mutation p.Q1082* 0.10 TCGA-94-8491-01 6 46111120 46111120 G C ENPP4 Missense_Mutation p.D369H 0.06 deleterious(0) possibly_damaging(0.88) TCGA-94-8491-01 6 46657225 46657225 G A TDRD6 Missense_Mutation p.E454K 0.20 tolerated(0.12) benign(0.008) TCGA-94-8491-01 6 47846445 47846445 C T PTCHD4 Missense_Mutation p.C712Y 0.38 deleterious(0) benign(0.077) TCGA-94-8491-01 6 66204931 66204931 G - EYS Frame_Shift_Del p.L125Ffs*6 0.14 TCGA-94-8491-01 6 71185389 71185389 G T FAM135A Missense_Mutation p.M107I 0.12 tolerated(0.24) benign(0.001) TCGA-94-8491-01 6 76570755 76570755 C G MYO6 Missense_Mutation p.Q497E 0.25 tolerated(1) unknown(0) TCGA-94-8491-01 6 80715654 80715654 C G TTK Missense_Mutation p.L32V 0.06 tolerated(0.28) benign(0.013) TCGA-94-8491-01 6 89871561 89871561 A T PM20D2 Missense_Mutation p.I370F 0.33 deleterious(0) probably_damaging(0.976) TCGA-94-8491-01 7 100176019 100176019 T A LRCH4 Intron 0.23 TCGA-94-8491-01 7 100491065 100491065 G - ACHE Frame_Shift_Del p.N264Mfs*38 0.23 TCGA-94-8491-01 7 100773731 100773731 C T SERPINE1 Silent p.L101L 0.23 TCGA-94-8491-01 7 103474064 103474064 A G RELN Silent p.S131S 0.29 TCGA-94-8491-01 7 107416918 107416918 A G SLC26A3 Silent p.F552F 0.24 TCGA-94-8491-01 7 112472704 112472704 C G C7orf60 Missense_Mutation p.R167T 0.30 deleterious(0.04) benign(0.366) TCGA-94-8491-01 7 127222368 127222368 C A GCC1 Missense_Mutation p.R676S 0.32 deleterious(0.02) benign(0.021) TCGA-94-8491-01 7 134254215 134254215 G A AKR1B15 Silent p.K123K 0.11 TCGA-94-8491-01 7 135418771 135418771 G A FAM180A Silent p.A158A 0.13 TCGA-94-8491-01 7 137569754 137569754 G T CREB3L2 Nonsense_Mutation p.Y419* 0.46 TCGA-94-8491-01 7 139299050 139299050 A C HIPK2 Missense_Mutation p.C658G 0.53 deleterious(0) benign(0.099) TCGA-94-8491-01 7 140107450 140107450 C G RAB19 Missense_Mutation p.H2D 0.24 tolerated_low_confidence(0.18) benign(0.004) TCGA-94-8491-01 7 143086981 143086981 G C ZYX Missense_Mutation p.E509Q 0.10 deleterious(0.03) probably_damaging(0.962) TCGA-94-8491-01 7 143096990 143096990 C T EPHA1 Missense_Mutation p.V197I 0.12 deleterious(0) probably_damaging(0.998) TCGA-94-8491-01 7 144060344 144060344 C T ARHGEF5 Silent p.N194N 0.04 TCGA-94-8491-01 7 150553606 150553606 G A AOC1 Silent p.T16T 0.38 TCGA-94-8491-01 7 150731677 150731677 C T ABCB8 Missense_Mutation p.S217F 0.41 deleterious(0) possibly_damaging(0.823) TCGA-94-8491-01 7 150742538 150742538 T C ABCB8 3'UTR 0.46 TCGA-94-8491-01 7 1607189 1607189 T C PSMG3 3'UTR 0.26 TCGA-94-8491-01 7 25182418 25182418 C G C7orf31 Missense_Mutation p.E234Q 0.08 tolerated(0.15) possibly_damaging(0.65) TCGA-94-8491-01 7 27797720 27797720 G T TAX1BP1 Missense_Mutation p.G78V 0.06 deleterious(0) probably_damaging(0.956) TCGA-94-8491-01 7 28997115 28997115 T C AC005013.5 5'Flank 0.25 TCGA-94-8491-01 7 35709939 35709939 C A HERPUD2 Splice_Site p.X76_splice 0.18 TCGA-94-8491-01 7 36698827 36698827 C G AOAH Missense_Mutation p.E112Q 0.26 tolerated(0.45) benign(0.062) TCGA-94-8491-01 7 4116652 4116652 G T SDK1 Silent p.V1011V 0.18 TCGA-94-8491-01 7 43360266 43360266 A T HECW1 Nonsense_Mutation p.K129* 0.33 TCGA-94-8491-01 7 44579822 44579822 C G NPC1L1 Silent p.L58L 0.33 TCGA-94-8491-01 7 79846726 79846726 G A GNAI1 Missense_Mutation p.D328N 0.26 deleterious(0) probably_damaging(1) TCGA-94-8491-01 7 81372693 81372693 C G HGF Missense_Mutation p.E281Q 0.30 deleterious(0) possibly_damaging(0.729) TCGA-94-8491-01 7 881721 881721 G T SUN1 Missense_Mutation p.L135F 0.22 deleterious(0) probably_damaging(0.998) TCGA-94-8491-01 7 881765 881765 G T SUN1 Missense_Mutation p.W150L 0.15 deleterious(0) probably_damaging(0.995) TCGA-94-8491-01 7 91632371 91632371 A T AKAP9 Missense_Mutation p.K1047I 0.09 possibly_damaging(0.857) TCGA-94-8491-01 7 99091943 99091943 G A ZNF394 Nonsense_Mutation p.Q299* 0.23 TCGA-94-8491-01 8 101299953 101299953 A C RNF19A Missense_Mutation p.C150W 0.46 deleterious(0) probably_damaging(1) TCGA-94-8491-01 8 102381306 102381306 G A NACAP1 RNA 0.10 TCGA-94-8491-01 8 110489586 110489586 C G PKHD1L1 Nonsense_Mutation p.S3017* 0.40 TCGA-94-8491-01 8 114449036 114449036 G T CSMD3 Silent p.P16P 0.37 TCGA-94-8491-01 8 114449037 114449037 G T CSMD3 Missense_Mutation p.P16H 0.37 tolerated_low_confidence(0.07) benign(0.001) TCGA-94-8491-01 8 124693317 124693317 C G ANXA13 3'UTR 0.37 TCGA-94-8491-01 8 133141736 133141736 C A KCNQ3 Nonsense_Mutation p.E798* 0.15 TCGA-94-8491-01 8 133645082 133645082 T G LRRC6 Missense_Mutation p.E186A 0.18 tolerated(0.07) benign(0.005) TCGA-94-8491-01 8 134225205 134225205 G T WISP1 Silent p.P56P 0.27 TCGA-94-8491-01 8 135614026 135614026 C A ZFAT Nonsense_Mutation p.E646* 0.28 TCGA-94-8491-01 8 139164561 139164561 T G FAM135B Silent p.R719R 0.32 TCGA-94-8491-01 8 139165081 139165081 C A FAM135B Missense_Mutation p.G546V 0.23 tolerated(0.19) benign(0.108) TCGA-94-8491-01 8 139278067 139278067 G C FAM135B Nonsense_Mutation p.S59* 0.24 TCGA-94-8491-01 8 144999517 144999517 G C PLEC Missense_Mutation p.A1664G 0.46 unknown(0) TCGA-94-8491-01 8 145095190 145095190 C G SPATC1 Missense_Mutation p.P198A 0.09 deleterious(0.03) probably_damaging(0.997) TCGA-94-8491-01 8 24201086 24201086 C T ADAM28 Missense_Mutation p.S660L 0.21 deleterious(0.02) benign(0.142) TCGA-94-8491-01 8 27660823 27660823 G T ESCO2 Missense_Mutation p.R558S 0.24 deleterious(0) probably_damaging(1) TCGA-94-8491-01 8 35406973 35406973 C A UNC5D Silent p.G89G 0.14 TCGA-94-8491-01 8 41583322 41583322 G A ANK1 Missense_Mutation p.A223V 0.08 deleterious(0) probably_damaging(0.999) TCGA-94-8491-01 8 53853111 53853111 C A NPBWR1 Missense_Mutation p.P215H 0.12 deleterious(0) probably_damaging(0.95) TCGA-94-8491-01 8 55533679 55533679 C T RP1 Silent p.V51V 0.20 TCGA-94-8491-01 8 57892657 57892657 C G IMPAD1 Missense_Mutation p.E163Q 0.06 tolerated(0.42) benign(0.043) TCGA-94-8491-01 8 59409197 59409197 G T CYP7A1 Missense_Mutation p.P292T 0.26 deleterious(0) probably_damaging(1) TCGA-94-8491-01 8 61121444 61121444 T A CA8 Missense_Mutation p.K258M 0.21 deleterious(0) benign(0.267) TCGA-94-8491-01 8 62289306 62289306 T C CLVS1 Missense_Mutation p.S200P 0.08 deleterious(0.05) possibly_damaging(0.718) TCGA-94-8491-01 8 68340320 68340320 C T CPA6 Missense_Mutation p.G363E 0.08 tolerated(0.32) probably_damaging(1) TCGA-94-8491-01 8 94934288 94934288 A C PDP1 Missense_Mutation p.M26L 0.06 deleterious_low_confidence(0) benign(0.267) TCGA-94-8491-01 9 100057239 100057239 G T CCDC180 5'UTR 0.11 TCGA-94-8491-01 9 101797407 101797407 C G COL15A1 Missense_Mutation p.P731A 0.12 deleterious(0.02) probably_damaging(0.996) TCGA-94-8491-01 9 124064311 124064311 G A GSN Missense_Mutation p.R72H 0.35 deleterious(0) probably_damaging(0.999) TCGA-94-8491-01 9 130580992 130580992 T C ENG Intron 0.31 TCGA-94-8491-01 9 13176308 13176308 C G MPDZ Missense_Mutation p.D920H 0.08 deleterious(0.02) benign(0.029) TCGA-94-8491-01 9 133907450 133907450 G T LAMC3 Nonsense_Mutation p.E233* 0.22 TCGA-94-8491-01 9 136226843 136226843 C A SURF2 Missense_Mutation p.Q119K 0.24 benign(0.199) TCGA-94-8491-01 9 140772586 140772586 C G CACNA1B Missense_Mutation p.N67K 0.11 deleterious(0) benign(0.064) TCGA-94-8491-01 9 20448158 20448158 G A MLLT3 Missense_Mutation p.T128I 0.19 deleterious(0) benign(0.002) TCGA-94-8491-01 9 2717988 2717988 C G KCNV2 Silent p.T83T 0.59 TCGA-94-8491-01 9 35717266 35717266 T G TLN1 Missense_Mutation p.N779H 0.36 tolerated(0.08) possibly_damaging(0.89) TCGA-94-8491-01 9 71836115 71836115 C A TJP2 Silent p.R250R 0.11 TCGA-94-8491-01 9 79322791 79322791 C A PRUNE2 Nonsense_Mutation p.E1467* 0.35 TCGA-94-8491-01 9 990228 990228 C G DMRT3 Silent p.P214P 0.10 TCGA-94-8491-01 X 100117807 100117807 T G NOX1 Missense_Mutation p.I114L 0.16 tolerated(0.07) benign(0.201) TCGA-94-8491-01 X 100613426 100613426 C A BTK Splice_Site p.X325_splice 0.12 TCGA-94-8491-01 X 103219127 103219127 A G TMSB15B Missense_Mutation p.E11G 0.33 deleterious(0.04) probably_damaging(0.913) TCGA-94-8491-01 X 103349379 103349379 C A SLC25A53 Missense_Mutation p.G188W 0.46 deleterious(0) probably_damaging(1) TCGA-94-8491-01 X 108636225 108636225 C G GUCY2F Missense_Mutation p.L828F 0.13 deleterious(0) probably_damaging(0.999) TCGA-94-8491-01 X 115304437 115304437 T A AGTR2 Missense_Mutation p.F302I 0.53 tolerated(0.11) possibly_damaging(0.705) TCGA-94-8491-01 X 12905860 12905860 G T TLR7 Missense_Mutation p.D745Y 0.47 tolerated(0.13) benign(0.022) TCGA-94-8491-01 X 130215885 130215910 TGACAGAGGTAAGCTGTACCCCGGAT - ARHGAP36 Splice_Site p.X83_splice 0.35 TCGA-94-8491-01 X 138713656 138713656 G T MCF2 Missense_Mutation p.S122R 0.63 tolerated(0.08) probably_damaging(0.999) TCGA-94-8491-01 X 150349624 150349624 T A GPR50 Silent p.P523P 0.06 TCGA-94-8491-01 X 150828262 150828262 T G PASD1 Silent p.T265T 0.77 TCGA-94-8491-01 X 153171853 153171853 C T AVPR2 Missense_Mutation p.P298L 0.05 deleterious(0.01) probably_damaging(0.916) TCGA-94-8491-01 X 34149248 34149248 C A FAM47A Missense_Mutation p.G383V 0.51 tolerated(0.06) probably_damaging(0.998) TCGA-94-8491-01 X 41089004 41089004 C A USP9X Missense_Mutation p.A2468E 0.55 tolerated(0.71) benign(0.081) TCGA-94-8491-01 X 47498309 47498309 G A ELK1 Silent p.A213A 0.58 TCGA-94-8491-01 X 52825322 52825322 A C SPANXN5 3'UTR 0.18 TCGA-94-8491-01 X 54037577 54037577 T G PHF8 Silent p.G344G 0.27 TCGA-94-8491-01 X 55047615 55047615 G C ALAS2 Missense_Mutation p.R170G 0.39 deleterious(0) probably_damaging(1) TCGA-94-8491-01 X 66931507 66931507 G T AR Missense_Mutation p.V717F 0.24 deleterious(0.02) probably_damaging(1) TCGA-94-8491-01 X 73961381 73961381 C G KIAA2022 Missense_Mutation p.S1004T 0.51 deleterious(0) possibly_damaging(0.496) TCGA-94-8491-01 X 77225015 77225015 C T PGAM4 Missense_Mutation p.G41S 0.06 tolerated(0.06) benign(0.324) TCGA-94-8491-01 X 85969701 85969701 G T DACH2 Missense_Mutation p.R361I 0.51 deleterious(0) probably_damaging(0.969) TCGA-94-A4VJ-01 10 102088965 102088965 C A PKD2L1 Intron 0.38 TCGA-94-A4VJ-01 10 102258982 102258982 C A SEC31B Missense_Mutation p.G507C 0.11 deleterious(0) possibly_damaging(0.474) TCGA-94-A4VJ-01 10 118969099 118969099 C A KCNK18 Silent p.L148L 0.18 TCGA-94-A4VJ-01 10 119100510 119100510 T G PDZD8 Missense_Mutation p.T326P 0.06 deleterious(0) possibly_damaging(0.682) TCGA-94-A4VJ-01 10 124924464 124924464 C G BUB3 3'UTR 0.27 TCGA-94-A4VJ-01 10 127464373 127464373 G A MMP21 Silent p.I6I 0.15 TCGA-94-A4VJ-01 10 129536797 129536797 C A FOXI2 Nonsense_Mutation p.Y175* 0.40 TCGA-94-A4VJ-01 10 129902535 129902535 T A MKI67 Missense_Mutation p.K2523N 0.45 tolerated(0.06) possibly_damaging(0.505) TCGA-94-A4VJ-01 10 131666136 131666136 C A EBF3 Missense_Mutation p.W265C 0.23 deleterious(0.02) probably_damaging(0.996) TCGA-94-A4VJ-01 10 135002112 135002112 T C KNDC1 Missense_Mutation p.C466R 0.30 deleterious(0) benign(0.014) TCGA-94-A4VJ-01 10 1406012 1406012 C A ADARB2 Silent p.A96A 0.17 TCGA-94-A4VJ-01 10 15254816 15254816 G T FAM171A1 3'UTR 0.36 TCGA-94-A4VJ-01 10 20335811 20335811 A G PLXDC2 Missense_Mutation p.H113R 0.16 deleterious(0) probably_damaging(0.981) TCGA-94-A4VJ-01 10 53227490 53227490 G C PRKG1 Missense_Mutation p.K162N 0.42 tolerated(0.28) benign(0.061) TCGA-94-A4VJ-01 10 56128890 56128890 G A PCDH15 Missense_Mutation p.T155I 0.16 deleterious(0) possibly_damaging(0.544) TCGA-94-A4VJ-01 10 69714836 69714836 C T HERC4 Missense_Mutation p.V701M 0.17 tolerated(0.23) benign(0.326) TCGA-94-A4VJ-01 10 85984615 85984615 C G LRIT2 Silent p.A122A 0.13 TCGA-94-A4VJ-01 10 92509303 92509303 C T HTR7 Silent p.G196G 0.15 TCGA-94-A4VJ-01 10 95326504 95326504 G - FFAR4 Frame_Shift_Del p.G10Afs*108 0.24 TCGA-94-A4VJ-01 10 95389034 95389034 C - PDE6C Frame_Shift_Del p.P365Lfs*13 0.13 TCGA-94-A4VJ-01 10 99186059 99186059 G T PGAM1 5'UTR 0.46 TCGA-94-A4VJ-01 11 102733873 102733873 A T MMP12 RNA 0.51 TCGA-94-A4VJ-01 11 110008025 110008025 G T ZC3H12C Missense_Mutation p.R220L 0.17 tolerated(0.07) possibly_damaging(0.741) TCGA-94-A4VJ-01 11 111367957 111367957 G T BTG4 Missense_Mutation p.S163R 0.10 tolerated(0.09) benign(0.049) TCGA-94-A4VJ-01 11 11964078 11964078 A T USP47 Missense_Mutation p.E769V 0.20 tolerated_low_confidence(0.07) benign(0.036) TCGA-94-A4VJ-01 11 123886449 123886449 C A OR10G4 Silent p.P56P 0.11 TCGA-94-A4VJ-01 11 124012343 124012343 G C VWA5A Missense_Mutation p.A640P 0.14 tolerated(0.33) benign(0.001) TCGA-94-A4VJ-01 11 124310407 124310407 G A OR8B8 Missense_Mutation p.T192I 0.31 deleterious_low_confidence(0.03) possibly_damaging(0.836) TCGA-94-A4VJ-01 11 15134084 15134084 C T INSC Silent p.V23V 0.17 TCGA-94-A4VJ-01 11 194568 194568 C T SCGB1C1 3'UTR 0.44 TCGA-94-A4VJ-01 11 26718756 26718756 C A SLC5A12 Missense_Mutation p.G332V 0.16 deleterious(0.01) probably_damaging(1) TCGA-94-A4VJ-01 11 30033076 30033076 A T KCNA4 Missense_Mutation p.F384I 0.23 tolerated(0.07) probably_damaging(0.977) TCGA-94-A4VJ-01 11 31671663 31671663 G T ELP4 Missense_Mutation p.G346V 0.45 deleterious(0) probably_damaging(1) TCGA-94-A4VJ-01 11 5153427 5153427 C A OR52A5 Missense_Mutation p.G149V 0.22 tolerated(0.48) benign(0.006) TCGA-94-A4VJ-01 11 5173155 5173155 T C OR52A1 Missense_Mutation p.M149V 0.18 tolerated(0.87) benign(0.001) TCGA-94-A4VJ-01 11 55658789 55658789 T A TRIM51 Missense_Mutation p.M347K 0.49 deleterious(0) benign(0.051) TCGA-94-A4VJ-01 11 55658790 55658790 G T TRIM51 Missense_Mutation p.M347I 0.48 deleterious(0.01) benign(0.002) TCGA-94-A4VJ-01 11 56020024 56020024 G T OR5T3 Missense_Mutation p.A117S 0.14 tolerated(1) benign(0.002) TCGA-94-A4VJ-01 11 5799721 5799721 C A OR52N5 Silent p.V48V 0.22 TCGA-94-A4VJ-01 11 58207122 58207122 C G OR5B12 Missense_Mutation p.R168T 0.46 tolerated_low_confidence(0.13) benign(0.017) TCGA-94-A4VJ-01 11 5877976 5877976 T A OR52E8 3'UTR 0.29 TCGA-94-A4VJ-01 11 62767270 62767270 G T SLC22A8 Missense_Mutation p.A161E 0.53 deleterious(0) probably_damaging(0.954) TCGA-94-A4VJ-01 11 64522235 64522235 C T PYGM Missense_Mutation p.R310H 0.18 deleterious(0.03) probably_damaging(0.944) TCGA-94-A4VJ-01 11 65651182 65651182 A G CTSW 3'UTR 0.71 TCGA-94-A4VJ-01 11 67209993 67209993 C T CORO1B Nonsense_Mutation p.W36* 0.30 TCGA-94-A4VJ-01 11 78419436 78419436 G A TENM4 Silent p.L1393L 0.44 TCGA-94-A4VJ-01 11 78443397 78443397 G A TENM4 Silent p.S1034S 0.30 TCGA-94-A4VJ-01 11 94038848 94038848 C A FOLR4 Missense_Mutation p.P16T 0.12 tolerated(0.22) benign(0.109) TCGA-94-A4VJ-01 11 99827643 99827643 A T CNTN5 Missense_Mutation p.Q260L 0.07 deleterious(0) probably_damaging(0.999) TCGA-94-A4VJ-01 12 103352394 103352394 C A ASCL1 Missense_Mutation p.N124K 0.23 deleterious(0) probably_damaging(0.999) TCGA-94-A4VJ-01 12 108686473 108686473 G T CMKLR1 Missense_Mutation p.N89K 0.23 deleterious(0) benign(0.347) TCGA-94-A4VJ-01 12 111744855 111744855 C A CUX2 Missense_Mutation p.A330E 0.33 deleterious(0.01) benign(0.046) TCGA-94-A4VJ-01 12 113873270 113873270 G C SDSL Missense_Mutation p.V194L 0.27 deleterious(0.01) possibly_damaging(0.867) TCGA-94-A4VJ-01 12 116408417 116408417 C A MED13L Missense_Mutation p.G2017W 0.25 deleterious(0.01) probably_damaging(0.995) TCGA-94-A4VJ-01 12 118511564 118511564 T C VSIG10 Missense_Mutation p.I387V 0.24 tolerated(1) benign(0.001) TCGA-94-A4VJ-01 12 122757423 122757423 C A CLIP1 Nonstop_Mutation p.*1439Lext*1 0.16 TCGA-94-A4VJ-01 12 123479440 123479440 C A PITPNM2 Missense_Mutation p.R714M 0.17 deleterious(0) benign(0.398) TCGA-94-A4VJ-01 12 129558768 129558768 T C TMEM132D Silent p.Q984Q 0.44 TCGA-94-A4VJ-01 12 129559032 129559032 T A TMEM132D Missense_Mutation p.R896S 0.28 tolerated(0.08) benign(0.013) TCGA-94-A4VJ-01 12 129563088 129563088 C A TMEM132D Missense_Mutation p.R702S 0.17 tolerated(0.77) benign(0.004) TCGA-94-A4VJ-01 12 132326176 132326176 C T MMP17 Silent p.H238H 0.16 TCGA-94-A4VJ-01 12 133454194 133454194 G T CHFR Missense_Mutation p.H60Q 0.35 deleterious(0) probably_damaging(0.981) TCGA-94-A4VJ-01 12 18719888 18719888 C T PIK3C2G Missense_Mutation p.P1262L 0.08 deleterious(0) probably_damaging(0.997) TCGA-94-A4VJ-01 12 19427858 19427858 G T PLEKHA5 Missense_Mutation p.Q418H 0.57 tolerated(0.11) possibly_damaging(0.832) TCGA-94-A4VJ-01 12 20774323 20774323 G T PDE3A Missense_Mutation p.K506N 0.09 tolerated(0.41) benign(0.001) TCGA-94-A4VJ-01 12 23687196 23687196 T A SOX5 Missense_Mutation p.Y750F 0.39 tolerated(0.11) benign(0.028) TCGA-94-A4VJ-01 12 26839523 26839523 C G ITPR2 Missense_Mutation p.G347R 0.54 tolerated(0.09) possibly_damaging(0.783) TCGA-94-A4VJ-01 12 32975527 32975527 G T PKP2 Silent p.S615S 0.09 TCGA-94-A4VJ-01 12 39124135 39124135 T A CPNE8 Missense_Mutation p.T250S 0.42 tolerated(0.06) probably_damaging(0.993) TCGA-94-A4VJ-01 12 40618953 40618953 A C LRRK2 Missense_Mutation p.Q7P 0.21 tolerated_low_confidence(0.06) benign(0.001) TCGA-94-A4VJ-01 12 41323767 41323767 G T CNTN1 Silent p.V222V 0.23 TCGA-94-A4VJ-01 12 41967450 41967450 C T PDZRN4 Missense_Mutation p.R957C 0.27 deleterious(0.02) probably_damaging(0.998) TCGA-94-A4VJ-01 12 49436608 49436608 C A KMT2D Missense_Mutation p.G1900C 0.20 probably_damaging(1) TCGA-94-A4VJ-01 12 70150198 70150198 G T RAB3IP Missense_Mutation p.D105Y 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.779) TCGA-94-A4VJ-01 12 9232317 9232317 G A A2M Silent p.N983N 0.46 TCGA-94-A4VJ-01 12 99007674 99007674 C G IKBIP Missense_Mutation p.E248Q 0.22 tolerated(0.1) possibly_damaging(0.593) TCGA-94-A4VJ-01 13 33703779 33703779 C T STARD13 Silent p.T345T 0.14 TCGA-94-A4VJ-01 13 39420801 39420801 G C FREM2 Silent p.L2037L 0.23 TCGA-94-A4VJ-01 13 39587118 39587118 G A PROSER1 Silent p.V757V 0.19 TCGA-94-A4VJ-01 13 43798257 43798257 G C ENOX1 Missense_Mutation p.L578V 0.16 deleterious(0) probably_damaging(0.991) TCGA-94-A4VJ-01 13 60544990 60544990 A C DIAPH3 Nonsense_Mutation p.L652* 0.14 TCGA-94-A4VJ-01 13 70681438 70681438 C A KLHL1 Missense_Mutation p.G132C 0.45 deleterious_low_confidence(0.02) benign(0.405) TCGA-94-A4VJ-01 13 92408674 92408674 G C GPC5 Missense_Mutation p.S427T 0.15 deleterious(0.02) possibly_damaging(0.76) TCGA-94-A4VJ-01 13 95092310 95092310 C T DCT Missense_Mutation p.G501S 0.27 tolerated(0.84) benign(0.006) TCGA-94-A4VJ-01 14 105716974 105716974 G A BTBD6 Missense_Mutation p.G475S 0.34 tolerated(0.08) probably_damaging(0.998) TCGA-94-A4VJ-01 14 21052515 21052515 G - RNASE11 Frame_Shift_Del p.A40Efs*13 0.31 TCGA-94-A4VJ-01 14 24422950 24422950 T A DHRS4 5'UTR 0.12 TCGA-94-A4VJ-01 14 32562429 32562429 A G ARHGAP5 Missense_Mutation p.I852V 0.15 deleterious(0.05) benign(0.348) TCGA-94-A4VJ-01 14 36064970 36064970 A C RALGAPA1 Missense_Mutation p.F1854C 0.16 deleterious(0) probably_damaging(0.999) TCGA-94-A4VJ-01 14 47426664 47426664 T A MDGA2 Nonsense_Mutation p.K668* 0.14 TCGA-94-A4VJ-01 14 51080001 51080001 T G ATL1 Missense_Mutation p.W219G 0.12 deleterious(0) probably_damaging(1) TCGA-94-A4VJ-01 14 51080002 51080002 G T ATL1 Missense_Mutation p.W219L 0.13 deleterious(0.02) probably_damaging(1) TCGA-94-A4VJ-01 14 52734794 52734794 G T PTGDR Missense_Mutation p.A88S 0.50 tolerated(0.24) benign(0.425) TCGA-94-A4VJ-01 14 73728001 73728001 T C PAPLN Silent p.H721H 0.33 TCGA-94-A4VJ-01 14 74363115 74363115 C T ZNF410 Missense_Mutation p.T106M 0.29 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-94-A4VJ-01 14 88652027 88652027 G T KCNK10 Missense_Mutation p.T495K 0.43 tolerated_low_confidence(0.57) benign(0.011) TCGA-94-A4VJ-01 14 91338467 91338467 T A RPS6KA5 Missense_Mutation p.D787V 0.24 deleterious_low_confidence(0.03) benign(0.025) TCGA-94-A4VJ-01 14 91444714 91444714 C G RPS6KA5 Missense_Mutation p.Q110H 0.17 tolerated(0.19) probably_damaging(0.941) TCGA-94-A4VJ-01 14 93107605 93107605 C T RIN3 Missense_Mutation p.R155W 0.17 deleterious(0) unknown(0) TCGA-94-A4VJ-01 14 93650162 93650162 C A MOAP1 Missense_Mutation p.W142C 0.19 tolerated(0.08) possibly_damaging(0.694) TCGA-94-A4VJ-01 14 95562981 95562981 T A DICER1 Missense_Mutation p.S1426C 0.26 deleterious_low_confidence(0.02) benign(0.065) TCGA-94-A4VJ-01 15 101983807 101983807 G A PCSK6 Missense_Mutation p.T118I 0.15 tolerated(0.38) benign(0.029) TCGA-94-A4VJ-01 15 20488830 20488830 C A CHEK2P2 RNA 0.12 TCGA-94-A4VJ-01 15 20659000 20659000 C T HERC2P3 RNA 0.19 TCGA-94-A4VJ-01 15 23932041 23932041 G C NDN Nonsense_Mutation p.Y108* 0.42 TCGA-94-A4VJ-01 15 25494372 25494372 C G SNORD115-43 RNA 0.36 TCGA-94-A4VJ-01 15 28370239 28370239 C T HERC2 Silent p.K4301K 0.34 TCGA-94-A4VJ-01 15 40951587 40951587 C T CASC5 Missense_Mutation p.T2281I 0.16 tolerated(0.25) possibly_damaging(0.69) TCGA-94-A4VJ-01 15 48056248 48056248 A T SEMA6D Missense_Mutation p.T317S 0.20 tolerated(0.6) probably_damaging(0.999) TCGA-94-A4VJ-01 15 54306151 54306151 G C UNC13C Missense_Mutation p.A351P 0.13 deleterious_low_confidence(0) possibly_damaging(0.461) TCGA-94-A4VJ-01 15 83328455 83328455 C A AP3B2 Missense_Mutation p.G1036W 0.27 deleterious(0) probably_damaging(0.965) TCGA-94-A4VJ-01 15 88423604 88423604 T A NTRK3 Missense_Mutation p.Y744F 0.38 deleterious(0) probably_damaging(0.966) TCGA-94-A4VJ-01 15 90126055 90126055 A T TICRR Nonsense_Mutation p.K265* 0.19 TCGA-94-A4VJ-01 16 1270702 1270702 G A CACNA1H Missense_Mutation p.R2257Q 0.59 deleterious_low_confidence(0.03) possibly_damaging(0.801) TCGA-94-A4VJ-01 16 1570016 1570016 T G IFT140 Missense_Mutation p.K1302N 0.29 deleterious(0) probably_damaging(0.979) TCGA-94-A4VJ-01 16 1837685 1837685 A - NUBP2 Frame_Shift_Del p.K115Sfs*31 0.25 TCGA-94-A4VJ-01 16 18434384 18434384 A G NPIPA8 5'Flank 0.19 TCGA-94-A4VJ-01 16 18866216 18866216 G C SMG1 Silent p.V1415V 0.31 TCGA-94-A4VJ-01 16 18937327 18937327 C T SMG1 Missense_Mutation p.G13S 0.14 tolerated_low_confidence(0.21) unknown(0) TCGA-94-A4VJ-01 16 21133287 21133287 C A DNAH3 Missense_Mutation p.K521N 0.17 tolerated(0.28) benign(0.001) TCGA-94-A4VJ-01 16 21136544 21136544 C A DNAH3 Silent p.L452L 0.25 TCGA-94-A4VJ-01 16 23208709 23208709 G T SCNN1G Missense_Mutation p.E346D 0.52 tolerated(0.5) probably_damaging(0.947) TCGA-94-A4VJ-01 16 2481217 2481217 C A CCNF Missense_Mutation p.L35I 0.24 deleterious(0) probably_damaging(0.999) TCGA-94-A4VJ-01 16 2570993 2570993 G A AMDHD2 Missense_Mutation p.G77S 0.06 deleterious(0) probably_damaging(0.998) TCGA-94-A4VJ-01 16 31141613 31141613 A G KAT8 Missense_Mutation p.N313S 0.37 deleterious(0.02) probably_damaging(0.946) TCGA-94-A4VJ-01 16 31160813 31160813 C A PRSS36 Missense_Mutation p.S27I 0.23 deleterious(0) possibly_damaging(0.534) TCGA-94-A4VJ-01 16 426200 426200 C A TMEM8A Missense_Mutation p.R387L 0.16 tolerated(0.89) benign(0.002) TCGA-94-A4VJ-01 16 46705672 46705672 A T VPS35 Missense_Mutation p.L490H 0.41 deleterious(0.03) probably_damaging(0.951) TCGA-94-A4VJ-01 16 56423113 56423113 G A AMFR Silent p.H420H 0.18 TCGA-94-A4VJ-01 16 57492248 57492248 G T COQ9 Missense_Mutation p.D233Y 0.16 deleterious(0) probably_damaging(1) TCGA-94-A4VJ-01 16 58550533 58550533 C T SETD6 Silent p.L210L 0.39 TCGA-94-A4VJ-01 16 61687568 61687568 G A CDH8 Missense_Mutation p.R782C 0.22 deleterious(0.01) benign(0.027) TCGA-94-A4VJ-01 16 66776474 66776474 G A DYNC1LI2 Silent p.L132L 0.10 TCGA-94-A4VJ-01 16 67578263 67578263 C G FAM65A Missense_Mutation p.L908V 0.16 deleterious(0.01) benign(0.364) TCGA-94-A4VJ-01 16 67681850 67681850 G A RLTPR Missense_Mutation p.E354K 0.12 deleterious(0) benign(0.07) TCGA-94-A4VJ-01 16 70977784 70977784 G C HYDIN Silent p.G2200G 0.28 TCGA-94-A4VJ-01 16 75688275 75688275 C T TERF2IP Missense_Mutation p.R259W 0.22 deleterious(0) possibly_damaging(0.865) TCGA-94-A4VJ-01 16 85954723 85954723 G A IRF8 Silent p.L372L 0.22 TCGA-94-A4VJ-01 16 89351869 89351869 C A ANKRD11 Missense_Mutation p.V361L 0.20 possibly_damaging(0.785) TCGA-94-A4VJ-01 16 89351870 89351870 C T ANKRD11 Silent p.P360P 0.20 TCGA-94-A4VJ-01 16 89805374 89805374 G T FANCA Silent p.P1392P 0.29 TCGA-94-A4VJ-01 17 16068435 16068435 G T NCOR1 Missense_Mutation p.P159Q 0.10 benign(0.374) TCGA-94-A4VJ-01 17 16703659 16703659 T A CCDC144A 3'UTR 0.17 TCGA-94-A4VJ-01 17 26105748 26105748 C A NOS2 Nonsense_Mutation p.E417* 0.16 TCGA-94-A4VJ-01 17 29855555 29855555 G C RAB11FIP4 Silent p.T496T 0.19 TCGA-94-A4VJ-01 17 33849744 33849744 T C SLFN12L 5'UTR 0.17 TCGA-94-A4VJ-01 17 38173261 38173261 C G CSF3 3'UTR 0.09 TCGA-94-A4VJ-01 17 39645960 39645960 T A KRT36 Missense_Mutation p.R53W 0.26 tolerated(0.16) possibly_damaging(0.841) TCGA-94-A4VJ-01 17 40275302 40275302 C G HSPB9 Missense_Mutation p.P145R 0.18 tolerated(0.23) benign(0.015) TCGA-94-A4VJ-01 17 41247863 41247863 C A BRCA1 Missense_Mutation p.A224S 0.20 tolerated(0.08) benign(0.109) TCGA-94-A4VJ-01 17 41584483 41584483 G A DHX8 Missense_Mutation p.G614E 0.20 deleterious(0) probably_damaging(0.996) TCGA-94-A4VJ-01 17 43344480 43344480 G A MAP3K14-AS1 Intron 0.25 TCGA-94-A4VJ-01 17 45915733 45915733 G C SCRN2 Missense_Mutation p.P341R 0.13 deleterious(0) probably_damaging(0.994) TCGA-94-A4VJ-01 17 48913333 48913333 G T WFIKKN2 Missense_Mutation p.R12L 0.18 tolerated_low_confidence(0.58) benign(0) TCGA-94-A4VJ-01 17 59668331 59668331 G T NACA2 Silent p.R71R 0.11 TCGA-94-A4VJ-01 17 61902052 61902052 C A FTSJ3 Nonsense_Mutation p.E288* 0.32 TCGA-94-A4VJ-01 17 64880639 64880639 C A CACNG5 Missense_Mutation p.S144Y 0.58 deleterious(0) possibly_damaging(0.857) TCGA-94-A4VJ-01 17 74288907 74288907 C T QRICH2 Missense_Mutation p.G468D 0.61 deleterious(0) probably_damaging(0.986) TCGA-94-A4VJ-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.40 deleterious(0) probably_damaging(1) TCGA-94-A4VJ-01 17 80206835 80206835 C A CSNK1D Missense_Mutation p.M371I 0.40 tolerated_low_confidence(0.05) benign(0.043) TCGA-94-A4VJ-01 18 13826036 13826036 G T MC5R Missense_Mutation p.W91L 0.34 tolerated(1) possibly_damaging(0.893) TCGA-94-A4VJ-01 18 14757830 14757830 G A ANKRD30B Missense_Mutation p.A212T 0.24 deleterious(0) probably_damaging(0.998) TCGA-94-A4VJ-01 18 14851758 14851758 C T ANKRD30B Missense_Mutation p.A1153V 0.20 tolerated(0.09) probably_damaging(0.971) TCGA-94-A4VJ-01 18 22642648 22642648 C A ZNF521 3'UTR 0.17 TCGA-94-A4VJ-01 18 3134719 3134719 G C MYOM1 Nonsense_Mutation p.Y771* 0.18 TCGA-94-A4VJ-01 18 5433990 5433990 C A EPB41L3 Missense_Mutation p.G246W 0.33 deleterious(0) probably_damaging(0.993) TCGA-94-A4VJ-01 18 54348608 54348608 C T WDR7 Missense_Mutation p.H111Y 0.12 deleterious(0) possibly_damaging(0.795) TCGA-94-A4VJ-01 18 59966089 59966089 C G KIAA1468 Missense_Mutation p.Q1176E 0.16 tolerated(0.17) benign(0.093) TCGA-94-A4VJ-01 18 64178896 64178896 A G CDH19 Silent p.D495D 0.45 TCGA-94-A4VJ-01 18 66721356 66721356 G T CCDC102B Missense_Mutation p.R508S 0.35 tolerated(0.09) benign(0.017) TCGA-94-A4VJ-01 18 7038825 7038825 G C LAMA1 Missense_Mutation p.S516C 0.31 tolerated(0.15) possibly_damaging(0.592) TCGA-94-A4VJ-01 19 16532181 16532181 T G EPS15L1 Missense_Mutation p.K300T 0.19 deleterious(0.03) probably_damaging(0.917) TCGA-94-A4VJ-01 19 17688840 17688840 G T COLGALT1 Missense_Mutation p.R403L 0.28 deleterious(0) probably_damaging(0.995) TCGA-94-A4VJ-01 19 23159353 23159353 G T ZNF728 Silent p.G262G 0.18 TCGA-94-A4VJ-01 19 3382198 3382198 C G NFIC Silent p.V173V 0.24 TCGA-94-A4VJ-01 19 35842904 35842904 G C FFAR1 Missense_Mutation p.W150C 0.23 deleterious(0.01) possibly_damaging(0.806) TCGA-94-A4VJ-01 19 36832203 36832203 C A ZFP14 Missense_Mutation p.K175N 0.18 tolerated(0.22) benign(0.18) TCGA-94-A4VJ-01 19 3918814 3918814 C T ATCAY Nonsense_Mutation p.Q338* 0.15 TCGA-94-A4VJ-01 19 40741197 40741197 G C AKT2 Missense_Mutation p.I412M 0.06 deleterious(0.05) benign(0.022) TCGA-94-A4VJ-01 19 42489455 42489455 C T ATP1A3 Intron 0.14 TCGA-94-A4VJ-01 19 44103042 44103042 C A ZNF576 Missense_Mutation p.Q49K 0.15 tolerated(0.9) benign(0.228) TCGA-94-A4VJ-01 19 48547228 48547228 C A CABP5 5'UTR 0.22 TCGA-94-A4VJ-01 19 50387771 50387771 C T TBC1D17 Silent p.N433N 0.15 TCGA-94-A4VJ-01 19 50881940 50881940 G A NR1H2 Missense_Mutation p.G212R 0.34 tolerated(0.63) benign(0.348) TCGA-94-A4VJ-01 19 50962395 50962395 A G MYBPC2 Missense_Mutation p.T875A 0.20 tolerated(0.27) benign(0.01) TCGA-94-A4VJ-01 19 52034653 52034653 C G SIGLEC6 Missense_Mutation p.G63A 0.13 tolerated(1) benign(0) TCGA-94-A4VJ-01 19 52272634 52272634 G C FPR2 Silent p.R241R 0.13 TCGA-94-A4VJ-01 19 53613038 53613038 C A ZNF415 Missense_Mutation p.R87M 0.39 deleterious(0.02) probably_damaging(0.966) TCGA-94-A4VJ-01 19 54876475 54876475 C A LAIR1 5'UTR 0.10 TCGA-94-A4VJ-01 19 55420786 55420786 G A NCR1 Missense_Mutation p.V180M 0.17 tolerated(0.1) possibly_damaging(0.816) TCGA-94-A4VJ-01 19 56499200 56499200 G C NLRP8 Missense_Mutation p.R1023P 0.12 deleterious_low_confidence(0.02) possibly_damaging(0.453) TCGA-94-A4VJ-01 19 58982783 58982783 C T ZNF324 Silent p.S308S 0.35 TCGA-94-A4VJ-01 19 603882 603882 G T HCN2 Missense_Mutation p.R324L 0.26 deleterious(0.03) possibly_damaging(0.568) TCGA-94-A4VJ-01 19 6694600 6694600 C A C3 Missense_Mutation p.R999L 0.18 deleterious(0.04) benign(0.116) TCGA-94-A4VJ-01 19 6988827 6988827 A C EMR4P RNA 0.24 TCGA-94-A4VJ-01 19 9089554 9089554 G T MUC16 Missense_Mutation p.T754K 0.32 unknown(0) TCGA-94-A4VJ-01 1 103352411 103352411 C A COL11A1 Missense_Mutation p.A1604S 0.30 unknown(0) TCGA-94-A4VJ-01 1 103488354 103488354 G T COL11A1 Missense_Mutation p.P397T 0.21 benign(0.023) TCGA-94-A4VJ-01 1 104114837 104114837 G C AMY2B Missense_Mutation p.D92H 0.19 tolerated(0.11) benign(0.008) TCGA-94-A4VJ-01 1 111216963 111216963 C G KCNA3 Missense_Mutation p.D157H 0.21 deleterious(0) probably_damaging(1) TCGA-94-A4VJ-01 1 118566003 118566003 G A SPAG17 Silent p.H1331H 0.17 TCGA-94-A4VJ-01 1 12919659 12919659 G T PRAMEF2 Missense_Mutation p.Q133H 0.20 deleterious(0.02) benign(0.323) TCGA-94-A4VJ-01 1 148251824 148251824 C A NBPF20 3'UTR 0.13 TCGA-94-A4VJ-01 1 149906956 149906956 T G MTMR11 Missense_Mutation p.I131L 0.14 tolerated(1) benign(0.002) TCGA-94-A4VJ-01 1 155340592 155340592 T A ASH1L Missense_Mutation p.E2172V 0.49 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-94-A4VJ-01 1 158369048 158369048 G A OR10T2 Missense_Mutation p.S70F 0.33 deleterious(0.01) probably_damaging(0.976) TCGA-94-A4VJ-01 1 158517878 158517878 C T OR6Y1 Silent p.L6L 0.14 TCGA-94-A4VJ-01 1 158747112 158747112 T A OR6N2 Missense_Mutation p.H105L 0.16 tolerated(0.12) probably_damaging(0.938) TCGA-94-A4VJ-01 1 158747398 158747398 C A OR6N2 Missense_Mutation p.A10S 0.17 tolerated(0.23) benign(0.002) TCGA-94-A4VJ-01 1 161695905 161695905 G A FCRLB Intron 0.06 TCGA-94-A4VJ-01 1 161953555 161953555 C G OLFML2B Silent p.T721T 0.16 TCGA-94-A4VJ-01 1 167096108 167096108 C A DUSP27 Missense_Mutation p.N580K 0.38 tolerated(0.22) benign(0.001) TCGA-94-A4VJ-01 1 167825553 167825553 G A ADCY10 Missense_Mutation p.P674L 0.45 deleterious(0.04) possibly_damaging(0.887) TCGA-94-A4VJ-01 1 169505847 169505847 T C F5 Missense_Mutation p.Y1623C 0.41 deleterious(0) probably_damaging(1) TCGA-94-A4VJ-01 1 169563983 169563983 T A SELP Missense_Mutation p.Q745L 0.47 tolerated(0.28) benign(0) TCGA-94-A4VJ-01 1 169985696 169985696 T A KIFAP3 Missense_Mutation p.T364S 0.56 tolerated(0.11) benign(0.098) TCGA-94-A4VJ-01 1 17720807 17720807 T C PADI6 RNA 0.20 TCGA-94-A4VJ-01 1 183920205 183920205 G T COLGALT2 Silent p.R358R 0.15 TCGA-94-A4VJ-01 1 185144089 185144089 G T SWT1 Silent p.L270L 0.36 TCGA-94-A4VJ-01 1 193218955 193218955 C T CDC73 Missense_Mutation p.H505Y 0.33 deleterious(0.05) possibly_damaging(0.861) TCGA-94-A4VJ-01 1 202743854 202743854 G C KDM5B Missense_Mutation p.R98G 0.37 deleterious(0) probably_damaging(0.965) TCGA-94-A4VJ-01 1 203743405 203743405 T C LAX1 Missense_Mutation p.S265P 0.30 deleterious(0) probably_damaging(0.986) TCGA-94-A4VJ-01 1 206784591 206784591 C G EIF2D Missense_Mutation p.V65L 0.46 tolerated(0.12) benign(0.031) TCGA-94-A4VJ-01 1 211749227 211749227 G A SLC30A1 Missense_Mutation p.L343F 0.39 deleterious(0) probably_damaging(0.999) TCGA-94-A4VJ-01 1 216680334 216680334 C A ESRRG Missense_Mutation p.G454C 0.11 deleterious(0) probably_damaging(1) TCGA-94-A4VJ-01 1 221055547 221055547 T C HLX Missense_Mutation p.Y272H 0.13 tolerated(0.05) possibly_damaging(0.453) TCGA-94-A4VJ-01 1 224804723 224804723 C A CNIH3 5'UTR 0.36 TCGA-94-A4VJ-01 1 236881170 236881170 T A ACTN2 Missense_Mutation p.W47R 0.29 deleterious(0) probably_damaging(1) TCGA-94-A4VJ-01 1 236918356 236918356 T C ACTN2 Missense_Mutation p.L671P 0.14 deleterious(0.04) probably_damaging(1) TCGA-94-A4VJ-01 1 247694926 247694926 C A OR2C3 Silent p.T296T 0.52 TCGA-94-A4VJ-01 1 247875841 247875841 A T OR6F1 Missense_Mutation p.Y73N 0.17 deleterious(0) probably_damaging(0.968) TCGA-94-A4VJ-01 1 248028163 248028163 C A TRIM58 Missense_Mutation p.Q225K 0.60 tolerated(0.12) benign(0.234) TCGA-94-A4VJ-01 1 248487871 248487871 G T OR2M7 5'UTR 0.18 TCGA-94-A4VJ-01 1 248636711 248636711 G A OR2T3 Silent p.T20T 0.39 TCGA-94-A4VJ-01 1 248737999 248737999 C T OR2T34 Silent p.T20T 0.20 TCGA-94-A4VJ-01 1 3328482 3328482 G T PRDM16 Missense_Mutation p.G574V 0.12 deleterious(0.04) benign(0.271) TCGA-94-A4VJ-01 1 3348641 3348641 G A PRDM16 Silent p.V1211V 0.20 TCGA-94-A4VJ-01 1 35370796 35370796 C T DLGAP3 Silent p.L63L 0.19 TCGA-94-A4VJ-01 1 3545218 3545218 C G TPRG1L 3'UTR 0.46 TCGA-94-A4VJ-01 1 37325502 37325502 C A GRIK3 Missense_Mutation p.M301I 0.23 tolerated(0.17) benign(0.027) TCGA-94-A4VJ-01 1 37325514 37325514 C A GRIK3 Missense_Mutation p.E297D 0.25 tolerated(0.27) benign(0.001) TCGA-94-A4VJ-01 1 47051550 47051550 T A MKNK1 Intron 0.42 TCGA-94-A4VJ-01 1 54359905 54359905 C A DIO1 Missense_Mutation p.L8M 0.39 tolerated(0.19) probably_damaging(0.986) TCGA-94-A4VJ-01 1 55148468 55148468 G T MROH7 Splice_Site p.X840_splice 0.22 TCGA-94-A4VJ-01 1 6204116 6204116 G A CHD5 Silent p.Y634Y 0.21 TCGA-94-A4VJ-01 1 67896035 67896035 G A SERBP1 5'UTR 0.24 TCGA-94-A4VJ-01 1 74832982 74832982 C G FPGT-TNNI3K Missense_Mutation p.P521R 0.12 deleterious(0.01) probably_damaging(0.981) TCGA-94-A4VJ-01 1 75622628 75622628 T A LHX8 Missense_Mutation p.N287K 0.12 tolerated(0.18) possibly_damaging(0.654) TCGA-94-A4VJ-01 1 78958908 78958908 C G PTGFR Missense_Mutation p.C160W 0.22 tolerated(1) benign(0.006) TCGA-94-A4VJ-01 1 91405368 91405368 C A ZNF644 Missense_Mutation p.A515S 0.30 deleterious(0.01) probably_damaging(0.989) TCGA-94-A4VJ-01 1 91779005 91779005 T A HFM1 Nonsense_Mutation p.K1098* 0.16 TCGA-94-A4VJ-01 1 99771524 99771524 T C LPPR4 Missense_Mutation p.L417S 0.23 deleterious(0) probably_damaging(0.999) TCGA-94-A4VJ-01 20 16351240 16351240 T C KIF16B Silent p.L1163L 0.47 TCGA-94-A4VJ-01 20 19677465 19677465 G A SLC24A3 Missense_Mutation p.G506R 0.22 deleterious(0) probably_damaging(1) TCGA-94-A4VJ-01 20 23345818 23345818 G T GZF1 Silent p.P266P 0.32 TCGA-94-A4VJ-01 20 3016248 3016248 C G PTPRA Nonsense_Mutation p.Y646* 0.45 TCGA-94-A4VJ-01 20 35443685 35443685 C A SOGA1 Silent p.L720L 0.20 TCGA-94-A4VJ-01 20 36386055 36386055 T A CTNNBL1 Silent p.A187A 0.38 TCGA-94-A4VJ-01 20 37076802 37076802 G T SNHG11 Intron 0.15 TCGA-94-A4VJ-01 20 37153476 37153476 G T RALGAPB Missense_Mutation p.V559F 0.13 deleterious(0) possibly_damaging(0.5) TCGA-94-A4VJ-01 20 42806572 42806572 C A JPH2 Intron 0.11 TCGA-94-A4VJ-01 20 43752465 43752465 C A WFDC12 3'UTR 0.33 TCGA-94-A4VJ-01 20 5903211 5903211 C G CHGB Missense_Mutation p.L141V 0.36 tolerated(0.17) possibly_damaging(0.738) TCGA-94-A4VJ-01 20 61944569 61944569 G T COL20A1 Missense_Mutation p.R726L 0.14 deleterious(0.04) possibly_damaging(0.792) TCGA-94-A4VJ-01 20 62065197 62065197 C T KCNQ2 Silent p.Q361Q 0.21 TCGA-94-A4VJ-01 20 62172863 62172863 C A SRMS Missense_Mutation p.A353S 0.33 deleterious(0) probably_damaging(0.98) TCGA-94-A4VJ-01 20 62196793 62196793 G A HELZ2 Missense_Mutation p.R1128W 0.18 tolerated(0.06) possibly_damaging(0.517) TCGA-94-A4VJ-01 21 11058237 11058237 T C BAGE2 RNA 0.10 TCGA-94-A4VJ-01 21 22838986 22838986 G T NCAM2 Missense_Mutation p.V572L 0.23 tolerated(0.19) benign(0.183) TCGA-94-A4VJ-01 21 43984874 43984874 G T SLC37A1 Missense_Mutation p.G398C 0.28 tolerated(0.93) probably_damaging(0.998) TCGA-94-A4VJ-01 21 45706582 45706582 G T AIRE Missense_Mutation p.R92L 0.17 deleterious(0) probably_damaging(0.979) TCGA-94-A4VJ-01 22 20731542 20731542 C A USP41 Missense_Mutation p.G53C 0.33 deleterious(0) probably_damaging(1) TCGA-94-A4VJ-01 22 23248796 23248796 G A IGLC3 Missense_Mutation p.V96M 0.16 benign(0.216) TCGA-94-A4VJ-01 22 46688752 46688752 A C TTC38 Missense_Mutation p.K461Q 0.31 deleterious(0.02) benign(0.377) TCGA-94-A4VJ-01 2 103300791 103300791 T C SLC9A2 Missense_Mutation p.I474T 0.36 deleterious(0) probably_damaging(0.967) TCGA-94-A4VJ-01 2 103343405 103343405 C A MFSD9 Missense_Mutation p.R109L 0.16 deleterious(0) probably_damaging(0.946) TCGA-94-A4VJ-01 2 118575276 118575276 G C DDX18 Missense_Mutation p.K114N 0.20 deleterious(0.03) benign(0.003) TCGA-94-A4VJ-01 2 125261960 125261960 C A CNTNAP5 Missense_Mutation p.P384H 0.22 deleterious(0.02) probably_damaging(0.966) TCGA-94-A4VJ-01 2 125261961 125261961 C G CNTNAP5 Silent p.P384P 0.21 TCGA-94-A4VJ-01 2 12880759 12880759 C A TRIB2 Silent p.R291R 0.27 TCGA-94-A4VJ-01 2 136590720 136590720 C A LCT Silent p.P227P 0.15 TCGA-94-A4VJ-01 2 141609352 141609352 G T LRP1B Missense_Mutation p.A1527D 0.34 benign(0) TCGA-94-A4VJ-01 2 144728270 144728270 C A GTDC1 Missense_Mutation p.G312V 0.23 deleterious(0.01) benign(0.424) TCGA-94-A4VJ-01 2 163083071 163083071 G C FAP Missense_Mutation p.T51R 0.13 tolerated(0.07) benign(0.266) TCGA-94-A4VJ-01 2 1664705 1664705 C A PXDN Silent p.V595V 0.12 TCGA-94-A4VJ-01 2 167760076 167760076 C G XIRP2 Silent p.P28P 0.22 TCGA-94-A4VJ-01 2 169996084 169996084 C A LRP2 Missense_Mutation p.M4412I 0.15 benign(0) TCGA-94-A4VJ-01 2 170031753 170031753 T C LRP2 Missense_Mutation p.N3573S 0.23 possibly_damaging(0.868) TCGA-94-A4VJ-01 2 170374702 170374719 AATGTACAAACAGGGTGT - KLHL41 In_Frame_Del p.K460_F466delinsI 0.11 TCGA-94-A4VJ-01 2 172644315 172644315 A G SLC25A12 Silent p.F576F 0.16 TCGA-94-A4VJ-01 2 185802810 185802810 A T ZNF804A Missense_Mutation p.E896V 0.24 tolerated(0.14) benign(0.027) TCGA-94-A4VJ-01 2 197135942 197135942 C G HECW2 Missense_Mutation p.D1104H 0.22 deleterious(0.03) possibly_damaging(0.64) TCGA-94-A4VJ-01 2 20132044 20132044 C G WDR35 Missense_Mutation p.K952N 0.26 deleterious(0.02) possibly_damaging(0.776) TCGA-94-A4VJ-01 2 202626181 202626181 T A ALS2 Missense_Mutation p.Q179L 0.37 deleterious(0) probably_damaging(1) TCGA-94-A4VJ-01 2 206608156 206608156 C T NRP2 Silent p.R507R 0.08 TCGA-94-A4VJ-01 2 207172537 207172537 C T ZDBF2 Silent p.D1095D 0.36 TCGA-94-A4VJ-01 2 208598736 208598736 A T CCNYL1 Intron 0.31 TCGA-94-A4VJ-01 2 212248420 212248420 C A ERBB4 Nonsense_Mutation p.E1283* 0.40 TCGA-94-A4VJ-01 2 212587173 212587173 C A ERBB4 Missense_Mutation p.E276D 0.24 tolerated(0.49) benign(0.001) TCGA-94-A4VJ-01 2 217234989 217234989 C A MARCH4 5'UTR 0.16 TCGA-94-A4VJ-01 2 224810022 224810022 G C WDFY1 5'UTR 0.18 TCGA-94-A4VJ-01 2 228135511 228135511 C G COL4A3 Missense_Mutation p.P534R 0.34 possibly_damaging(0.479) TCGA-94-A4VJ-01 2 228564227 228564227 C A SLC19A3 Silent p.L68L 0.30 TCGA-94-A4VJ-01 2 233405327 233405327 C T CHRNG Missense_Mutation p.R86C 0.12 deleterious(0) probably_damaging(0.995) TCGA-94-A4VJ-01 2 234854662 234854662 C T TRPM8 Missense_Mutation p.R288C 0.19 deleterious(0) possibly_damaging(0.794) TCGA-94-A4VJ-01 2 235404691 235404691 C A ARL4C Silent p.L180L 0.14 TCGA-94-A4VJ-01 2 238486729 238486729 C T RAB17 Missense_Mutation p.G76D 0.25 deleterious(0) probably_damaging(0.999) TCGA-94-A4VJ-01 2 242758167 242758167 C A NEU4 Silent p.P429P 0.50 TCGA-94-A4VJ-01 2 27306270 27306270 G A EMILIN1 Missense_Mutation p.G611S 0.13 benign(0.146) TCGA-94-A4VJ-01 2 27715544 27715544 C A FNDC4 Missense_Mutation p.G220W 0.20 deleterious(0) probably_damaging(0.979) TCGA-94-A4VJ-01 2 27715545 27715545 C A FNDC4 Silent p.V219V 0.20 TCGA-94-A4VJ-01 2 30998885 30998885 C A CAPN13 Nonsense_Mutation p.G100* 0.19 TCGA-94-A4VJ-01 2 30998886 30998886 C A CAPN13 Silent p.L99L 0.19 TCGA-94-A4VJ-01 2 50280669 50280669 C T NRXN1 Missense_Mutation p.G1330S 0.09 tolerated(0.27) benign(0.095) TCGA-94-A4VJ-01 2 61455960 61455960 A G USP34 Splice_Site p.X2456_splice 0.11 TCGA-94-A4VJ-01 2 63609192 63609192 G A WDPCP Silent p.I491I 0.20 TCGA-94-A4VJ-01 2 65305064 65305064 G C CEP68 Missense_Mutation p.E690D 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-94-A4VJ-01 2 73492750 73492750 T C FBXO41 Silent p.P408P 0.37 TCGA-94-A4VJ-01 2 88082441 88082441 C G RGPD2 Missense_Mutation p.E1368Q 0.25 deleterious(0) possibly_damaging(0.448) TCGA-94-A4VJ-01 2 89339973 89339973 C T IGKV1-12 Silent p.V33V 0.09 TCGA-94-A4VJ-01 2 89339994 89339994 C T IGKV1-12 Missense_Mutation p.M26I 0.30 deleterious(0.02) benign(0.127) TCGA-94-A4VJ-01 2 90199068 90199068 C A IGKV1D-12 Missense_Mutation p.Q77K 0.30 tolerated(0.15) benign(0.016) TCGA-94-A4VJ-01 2 98355921 98355921 C A ZAP70 Missense_Mutation p.P607H 0.18 deleterious_low_confidence(0.03) benign(0.155) TCGA-94-A4VJ-01 3 101572605 101572608 AGTT - NFKBIZ Frame_Shift_Del p.L413Gfs*54 0.13 TCGA-94-A4VJ-01 3 108812379 108812379 A T MORC1 Missense_Mutation p.L198Q 0.08 deleterious(0) probably_damaging(0.982) TCGA-94-A4VJ-01 3 111898510 111898510 C T SLC9C1 Missense_Mutation p.M929I 0.20 tolerated(0.83) benign(0.003) TCGA-94-A4VJ-01 3 114069284 114069284 C G ZBTB20 Silent p.L547L 0.22 TCGA-94-A4VJ-01 3 118648998 118648998 C A IGSF11 Missense_Mutation p.W59C 0.42 deleterious(0) probably_damaging(1) TCGA-94-A4VJ-01 3 118922768 118922768 G C UPK1B Missense_Mutation p.W246S 0.10 tolerated(0.21) benign(0.005) TCGA-94-A4VJ-01 3 124017678 124017678 A C KALRN Missense_Mutation p.Q335P 0.11 tolerated(0.27) benign(0.429) TCGA-94-A4VJ-01 3 130095515 130095515 G T COL6A5 Missense_Mutation p.G168V 0.15 deleterious(0) probably_damaging(0.999) TCGA-94-A4VJ-01 3 140401331 140401331 C T TRIM42 Silent p.S123S 0.11 TCGA-94-A4VJ-01 3 148458819 148458819 C A AGTR1 5'UTR 0.09 TCGA-94-A4VJ-01 3 152554031 152554031 G T P2RY1 Missense_Mutation p.V154L 0.10 tolerated(0.22) probably_damaging(0.992) TCGA-94-A4VJ-01 3 154834348 154834348 T C MME Missense_Mutation p.S147P 0.20 tolerated(0.15) benign(0.233) TCGA-94-A4VJ-01 3 154858069 154858069 G C MME Missense_Mutation p.E315D 0.05 tolerated(0.2) benign(0.001) TCGA-94-A4VJ-01 3 157820477 157820477 G T SHOX2 Missense_Mutation p.A206D 0.07 deleterious(0) probably_damaging(1) TCGA-94-A4VJ-01 3 160150206 160150206 A G SMC4 Missense_Mutation p.K1145E 0.12 deleterious(0) possibly_damaging(0.626) TCGA-94-A4VJ-01 3 164786620 164786620 C A SI Splice_Site p.X125_splice 0.47 TCGA-94-A4VJ-01 3 165548693 165548693 C T BCHE Silent p.G43G 0.06 TCGA-94-A4VJ-01 3 167223108 167223108 T C WDR49 Missense_Mutation p.I605M 0.35 tolerated(0.26) benign(0.012) TCGA-94-A4VJ-01 3 179526084 179526084 G A PEX5L Silent p.N498N 0.09 TCGA-94-A4VJ-01 3 180328402 180328402 G T TTC14 3'UTR 0.22 TCGA-94-A4VJ-01 3 185304057 185304057 G A SENP2 5'UTR 0.27 TCGA-94-A4VJ-01 3 193854827 193854827 G T HES1 Silent p.A94A 0.10 TCGA-94-A4VJ-01 3 196287875 196287875 C A WDR53 Missense_Mutation p.D158Y 0.12 deleterious(0) probably_damaging(1) TCGA-94-A4VJ-01 3 196612695 196612695 A G SENP5 Missense_Mutation p.K215E 0.08 deleterious_low_confidence(0) benign(0.123) TCGA-94-A4VJ-01 3 197497069 197497069 A T FYTTD1 Missense_Mutation p.R151W 0.44 deleterious(0) probably_damaging(0.992) TCGA-94-A4VJ-01 3 2613171 2613171 G A CNTN4 5'UTR 0.77 TCGA-94-A4VJ-01 3 39374559 39374559 C A CCR8 Missense_Mutation p.A246E 0.60 deleterious(0) possibly_damaging(0.821) TCGA-94-A4VJ-01 3 40574135 40574135 C T ZNF621 Nonsense_Mutation p.Q292* 0.29 TCGA-94-A4VJ-01 3 46904775 46904775 C A MYL3 Nonsense_Mutation p.E36* 0.25 TCGA-94-A4VJ-01 3 50369563 50369564 - TC RASSF1 Frame_Shift_Ins p.T131Rfs*27 0.42 TCGA-94-A4VJ-01 3 57143649 57143649 C T IL17RD Missense_Mutation p.E156K 0.37 tolerated(0.07) benign(0.106) TCGA-94-A4VJ-01 3 64587635 64587635 A T ADAMTS9 Silent p.T1334T 0.18 TCGA-94-A4VJ-01 3 89528663 89528663 G A EPHA3 3'UTR 0.62 TCGA-94-A4VJ-01 3 96706202 96706202 A G EPHA6 Missense_Mutation p.H160R 0.42 tolerated(0.18) benign(0.311) TCGA-94-A4VJ-01 4 103789990 103789990 T C UBE2D3 5'UTR 0.14 TCGA-94-A4VJ-01 4 104061158 104061158 C G CENPE Missense_Mutation p.E1998Q 0.46 possibly_damaging(0.548) TCGA-94-A4VJ-01 4 106155643 106155643 C G TET2 Missense_Mutation p.L182V 0.10 tolerated(0.38) benign(0.008) TCGA-94-A4VJ-01 4 122833061 122833061 G T TRPC3 Missense_Mutation p.T510N 0.20 deleterious(0.02) benign(0.223) TCGA-94-A4VJ-01 4 123302208 123302208 T A ADAD1 Silent p.P78P 0.12 TCGA-94-A4VJ-01 4 126336398 126336398 G T FAT4 Nonsense_Mutation p.G2094* 0.40 TCGA-94-A4VJ-01 4 156289747 156289747 A C MAP9 Silent p.L233L 0.46 TCGA-94-A4VJ-01 4 162307213 162307213 A G FSTL5 Missense_Mutation p.F744L 0.21 deleterious(0.03) probably_damaging(0.914) TCGA-94-A4VJ-01 4 178354402 178354402 C G AGA Silent p.G302G 0.18 TCGA-94-A4VJ-01 4 178911724 178911724 T A LINC01098 3'UTR 0.44 TCGA-94-A4VJ-01 4 186545230 186545230 C A SORBS2 Silent p.P547P 0.24 TCGA-94-A4VJ-01 4 187557906 187557906 C A FAT1 Nonsense_Mutation p.E1269* 0.50 TCGA-94-A4VJ-01 4 20526797 20526797 T A SLIT2 Splice_Site p.X488_splice 0.10 TCGA-94-A4VJ-01 4 20529995 20529995 G T SLIT2 Intron 0.22 TCGA-94-A4VJ-01 4 2632862 2632862 C A FAM193A Missense_Mutation p.A44D 0.10 deleterious(0) probably_damaging(0.996) TCGA-94-A4VJ-01 4 2831846 2831846 C A SH3BP2 Missense_Mutation p.P462T 0.21 tolerated_low_confidence(0.16) benign(0.015) TCGA-94-A4VJ-01 4 38830164 38830164 G A TLR6 Missense_Mutation p.H311Y 0.24 tolerated(0.07) benign(0.004) TCGA-94-A4VJ-01 4 40440258 40440258 C A RBM47 Missense_Mutation p.R218L 0.34 deleterious(0) benign(0.193) TCGA-94-A4VJ-01 4 47809017 47809017 C G CORIN Missense_Mutation p.K37N 0.42 deleterious_low_confidence(0) possibly_damaging(0.662) TCGA-94-A4VJ-01 4 55963835 55963835 A T KDR Missense_Mutation p.L870M 0.30 deleterious(0) probably_damaging(0.988) TCGA-94-A4VJ-01 4 59961 59961 C A ZNF595 Silent p.I47I 0.06 TCGA-94-A4VJ-01 4 678555 678555 C T MFSD7 Missense_Mutation p.G226R 0.12 deleterious(0.01) benign(0.134) TCGA-94-A4VJ-01 4 69434127 69434127 C A UGT2B17 Missense_Mutation p.V26L 0.14 deleterious(0.02) possibly_damaging(0.795) TCGA-94-A4VJ-01 4 71250270 71250270 G T SMR3B Missense_Mutation p.A15S 0.12 deleterious_low_confidence(0) unknown(0) TCGA-94-A4VJ-01 4 79432507 79432507 G A FRAS1 Missense_Mutation p.G3287E 0.13 possibly_damaging(0.686) TCGA-94-A4VJ-01 4 81952709 81952709 C A BMP3 Missense_Mutation p.L91M 0.45 deleterious(0.02) probably_damaging(0.975) TCGA-94-A4VJ-01 4 83350594 83350594 C G HNRNPDL Missense_Mutation p.D84H 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.861) TCGA-94-A4VJ-01 4 95200121 95200121 A G SMARCAD1 Missense_Mutation p.K782E 0.24 deleterious(0) probably_damaging(0.992) TCGA-94-A4VJ-01 5 118445944 118445944 A T DMXL1 Missense_Mutation p.N155Y 0.25 deleterious(0.03) benign(0.304) TCGA-94-A4VJ-01 5 137503707 137503707 C A BRD8 Nonsense_Mutation p.E235* 0.18 TCGA-94-A4VJ-01 5 137503708 137503708 C A BRD8 Silent p.L234L 0.19 TCGA-94-A4VJ-01 5 140502574 140502574 G A PCDHB4 Missense_Mutation p.V332I 0.34 tolerated_low_confidence(0.08) possibly_damaging(0.57) TCGA-94-A4VJ-01 5 140811098 140811098 G T PCDHGA12 Missense_Mutation p.G258C 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-94-A4VJ-01 5 148730826 148730826 A G GRPEL2 Missense_Mutation p.E220G 0.23 tolerated(0.05) possibly_damaging(0.884) TCGA-94-A4VJ-01 5 161524689 161524689 C A GABRG2 Missense_Mutation p.R125S 0.27 deleterious(0) probably_damaging(0.998) TCGA-94-A4VJ-01 5 168189580 168189580 C A SLIT3 Missense_Mutation p.R525L 0.34 tolerated(0.07) benign(0.135) TCGA-94-A4VJ-01 5 172197166 172197166 G A DUSP1 Nonsense_Mutation p.Q171* 0.21 TCGA-94-A4VJ-01 5 32074220 32074220 G A PDZD2 Missense_Mutation p.R1003H 0.59 tolerated(0.56) benign(0) TCGA-94-A4VJ-01 5 32230280 32230280 C A MTMR12 Missense_Mutation p.W616C 0.16 deleterious(0) probably_damaging(1) TCGA-94-A4VJ-01 5 38370453 38370453 A G EGFLAM Missense_Mutation p.M201V 0.35 deleterious_low_confidence(0.03) benign(0.03) TCGA-94-A4VJ-01 5 434424 434424 T C AHRR Silent p.C545C 0.05 TCGA-94-A4VJ-01 5 45262170 45262170 G A HCN1 Silent p.F842F 0.20 TCGA-94-A4VJ-01 5 635568 635568 G T CEP72 Missense_Mutation p.S258I 0.10 tolerated(0.16) benign(0.099) TCGA-94-A4VJ-01 5 66084525 66084525 C T MAST4 Missense_Mutation p.A182V 0.33 benign(0.33) TCGA-94-A4VJ-01 5 79733851 79733851 A G ZFYVE16 Silent p.E449E 0.22 TCGA-94-A4VJ-01 5 82836389 82836389 C G VCAN Missense_Mutation p.R2523G 0.19 tolerated(0.26) benign(0.001) TCGA-94-A4VJ-01 5 89971213 89971213 C T GPR98 Missense_Mutation p.A1755V 0.17 benign(0.009) TCGA-94-A4VJ-01 5 89979959 89979959 T A GPR98 Missense_Mutation p.V2074D 0.12 probably_damaging(0.988) TCGA-94-A4VJ-01 6 105606401 105606401 G T POPDC3 Missense_Mutation p.R274S 0.22 tolerated(0.68) benign(0) TCGA-94-A4VJ-01 6 107780352 107780352 C G PDSS2 Silent p.P46P 0.12 TCGA-94-A4VJ-01 6 112671481 112671481 G T RFPL4B Missense_Mutation p.A191S 0.12 tolerated(0.53) benign(0.046) TCGA-94-A4VJ-01 6 112671568 112671568 T - RFPL4B Frame_Shift_Del p.F221Lfs*39 0.17 TCGA-94-A4VJ-01 6 116442206 116442206 G A COL10A1 Missense_Mutation p.P358L 0.46 deleterious(0.02) unknown(0) TCGA-94-A4VJ-01 6 117677795 117677795 G C ROS1 Missense_Mutation p.L1380V 0.13 tolerated(0.45) benign(0.146) TCGA-94-A4VJ-01 6 129762054 129762054 A T LAMA2 Missense_Mutation p.Q2060L 0.47 tolerated(0.33) benign(0.004) TCGA-94-A4VJ-01 6 13639854 13639854 C A RANBP9 Missense_Mutation p.S489I 0.66 deleterious(0.04) possibly_damaging(0.522) TCGA-94-A4VJ-01 6 149699983 149699983 A G TAB2 Missense_Mutation p.Q311R 0.17 tolerated(0.83) benign(0.204) TCGA-94-A4VJ-01 6 16327659 16327659 C T ATXN1 Missense_Mutation p.D295N 0.36 tolerated(0.07) probably_damaging(0.975) TCGA-94-A4VJ-01 6 165832220 165832220 G A PDE10A Nonsense_Mutation p.Q301* 0.64 TCGA-94-A4VJ-01 6 167595260 167595260 G T TCP10L2 Missense_Mutation p.M306I 0.12 tolerated(0.26) benign(0.006) TCGA-94-A4VJ-01 6 31746988 31746988 C G VARS Missense_Mutation p.G1161A 0.10 tolerated(0.43) benign(0.041) TCGA-94-A4VJ-01 6 38851136 38851136 T C DNAH8 Silent p.T2463T 0.25 TCGA-94-A4VJ-01 6 57372298 57372298 G T PRIM2 Missense_Mutation p.R235M 0.05 deleterious(0) probably_damaging(0.996) TCGA-94-A4VJ-01 6 75902024 75902024 A C COL12A1 Missense_Mutation p.L80V 0.36 benign(0.006) TCGA-94-A4VJ-01 6 78172570 78172570 G T HTR1B Missense_Mutation p.P184H 0.11 deleterious(0) probably_damaging(0.953) TCGA-94-A4VJ-01 6 89479523 89479523 C A RNGTT Missense_Mutation p.R470L 0.10 deleterious(0.01) benign(0.034) TCGA-94-A4VJ-01 7 100404134 100404134 T C EPHB4 Missense_Mutation p.T798A 0.16 deleterious(0) possibly_damaging(0.834) TCGA-94-A4VJ-01 7 100681241 100681241 T A MUC17 Missense_Mutation p.S2182T 0.10 unknown(0) TCGA-94-A4VJ-01 7 103136262 103136262 G T RELN Missense_Mutation p.L3093I 0.13 tolerated(0.23) benign(0.41) TCGA-94-A4VJ-01 7 103151379 103151379 G C RELN Silent p.L2731L 0.54 TCGA-94-A4VJ-01 7 103205802 103205802 G T RELN Nonsense_Mutation p.Y1711* 0.55 TCGA-94-A4VJ-01 7 1040184 1040184 C A C7orf50 Missense_Mutation p.W109C 0.26 deleterious(0) probably_damaging(1) TCGA-94-A4VJ-01 7 104377249 104377249 C G LHFPL3 Missense_Mutation p.I191M 0.33 tolerated(0.12) probably_damaging(0.998) TCGA-94-A4VJ-01 7 107335068 107335068 G T SLC26A4 Silent p.S448S 0.26 TCGA-94-A4VJ-01 7 131872240 131872240 G T PLXNA4 Missense_Mutation p.L995I 0.22 tolerated(0.16) benign(0.009) TCGA-94-A4VJ-01 7 141799497 141799497 A T MGAM Missense_Mutation p.I1716F 0.57 deleterious(0) possibly_damaging(0.815) TCGA-94-A4VJ-01 7 143747952 143747952 C G OR2A5 Missense_Mutation p.S153C 0.51 deleterious(0.02) benign(0.049) TCGA-94-A4VJ-01 7 150720193 150720193 G A ATG9B Missense_Mutation p.P254S 0.54 tolerated(0.67) benign(0.01) TCGA-94-A4VJ-01 7 154863104 154863104 C T HTR5A Silent p.T165T 0.16 TCGA-94-A4VJ-01 7 38305114 38305114 C G TRGC1 Missense_Mutation p.G56A 0.21 tolerated(0.19) benign(0) TCGA-94-A4VJ-01 7 38530673 38530673 G T AMPH Missense_Mutation p.L125M 0.18 deleterious(0.02) probably_damaging(1) TCGA-94-A4VJ-01 7 39726327 39726327 G A RALA Missense_Mutation p.G21S 0.13 deleterious(0.01) probably_damaging(1) TCGA-94-A4VJ-01 7 45148479 45148479 A T TBRG4 Missense_Mutation p.L120M 0.15 tolerated(0.11) possibly_damaging(0.615) TCGA-94-A4VJ-01 7 48315000 48315000 C G ABCA13 Missense_Mutation p.L1913V 0.45 benign(0.221) TCGA-94-A4VJ-01 7 53103565 53103565 G T POM121L12 Missense_Mutation p.Q67H 0.17 tolerated(1) possibly_damaging(0.891) TCGA-94-A4VJ-01 7 5983607 5983607 G A RSPH10B Missense_Mutation p.S515F 0.10 tolerated(0.68) possibly_damaging(0.861) TCGA-94-A4VJ-01 7 64453048 64453048 T A ERV3-1 Missense_Mutation p.L119F 0.12 deleterious(0.02) probably_damaging(0.919) TCGA-94-A4VJ-01 7 75187544 75187544 T A HIP1 Missense_Mutation p.N464I 0.21 deleterious(0.03) possibly_damaging(0.871) TCGA-94-A4VJ-01 7 82785118 82785118 C A PCLO Missense_Mutation p.R280M 0.07 unknown(0) TCGA-94-A4VJ-01 7 87056145 87056145 A C ABCB4 Missense_Mutation p.L662R 0.06 tolerated(0.12) benign(0.002) TCGA-94-A4VJ-01 7 92764501 92764501 C A SAMD9L Missense_Mutation p.D262Y 0.61 deleterious(0) possibly_damaging(0.833) TCGA-94-A4VJ-01 7 94897980 94897980 T C PPP1R9A Silent p.S928S 0.16 TCGA-94-A4VJ-01 7 97833379 97833379 C G LMTK2 Missense_Mutation p.A1455G 0.14 tolerated(0.29) benign(0.103) TCGA-94-A4VJ-01 7 99021482 99021482 G A ATP5J2-PTCD1 Silent p.D661D 0.27 TCGA-94-A4VJ-01 8 10469915 10469915 G T RP1L1 Missense_Mutation p.Q565K 0.23 benign(0.09) TCGA-94-A4VJ-01 8 105367399 105367399 C A DCSTAMP Missense_Mutation p.L442I 0.07 tolerated(0.31) benign(0.049) TCGA-94-A4VJ-01 8 110980398 110980398 C A KCNV1 Silent p.R474R 0.14 TCGA-94-A4VJ-01 8 113599403 113599403 G T CSMD3 Silent p.L1259L 0.15 TCGA-94-A4VJ-01 8 120430298 120430298 C A NOV Missense_Mutation p.A104E 0.30 deleterious(0) benign(0.221) TCGA-94-A4VJ-01 8 120430299 120430299 G T NOV Silent p.A104A 0.31 TCGA-94-A4VJ-01 8 145006298 145006298 C A PLEC Missense_Mutation p.E831D 0.07 unknown(0) TCGA-94-A4VJ-01 8 22021574 22021574 T A SFTPC Splice_Site 0.43 TCGA-94-A4VJ-01 8 33319029 33319029 C G FUT10 5'UTR 0.19 TCGA-94-A4VJ-01 8 3351247 3351247 A G CSMD1 Missense_Mutation p.V449A 0.50 probably_damaging(0.914) TCGA-94-A4VJ-01 8 6794430 6794430 T A DEFA4 5'UTR 0.45 TCGA-94-A4VJ-01 8 77619947 77619947 C T ZFHX4 Silent p.A919A 0.22 TCGA-94-A4VJ-01 8 77763695 77763695 T G ZFHX4 Missense_Mutation p.M1513R 0.50 benign(0.003) TCGA-94-A4VJ-01 8 77764220 77764220 C T ZFHX4 Missense_Mutation p.P1688L 0.39 benign(0.005) TCGA-94-A4VJ-01 8 86050637 86050637 G C LRRCC1 Missense_Mutation p.E923Q 0.13 tolerated(0.86) benign(0.005) TCGA-94-A4VJ-01 8 92406449 92406449 A G SLC26A7 Missense_Mutation p.S647G 0.16 tolerated(0.33) benign(0.043) TCGA-94-A4VJ-01 8 93074893 93074893 G T RUNX1T1 Intron 0.33 TCGA-94-A4VJ-01 8 99560390 99560390 C A STK3 Splice_Site p.X345_splice 0.47 TCGA-94-A4VJ-01 9 115931510 115931510 C A FKBP15 Missense_Mutation p.R1160L 0.40 tolerated_low_confidence(0.16) benign(0.024) TCGA-94-A4VJ-01 9 124522316 124522316 G T DAB2IP Missense_Mutation p.W228C 0.49 deleterious(0) probably_damaging(0.999) TCGA-94-A4VJ-01 9 125391644 125391644 C A OR1B1 Silent p.L57L 0.18 TCGA-94-A4VJ-01 9 128722978 128722978 G T PBX3 Missense_Mutation p.G287C 0.35 deleterious(0.01) probably_damaging(0.994) TCGA-94-A4VJ-01 9 128722979 128722979 G T PBX3 Missense_Mutation p.G287V 0.38 deleterious(0.03) probably_damaging(0.954) TCGA-94-A4VJ-01 9 131381218 131381218 G A SPTAN1 Nonsense_Mutation p.W1890* 0.38 TCGA-94-A4VJ-01 9 139290173 139290173 T A SNAPC4 Missense_Mutation p.D76V 0.44 deleterious(0) possibly_damaging(0.762) TCGA-94-A4VJ-01 9 139290174 139290174 C T SNAPC4 Missense_Mutation p.D76N 0.44 deleterious(0.01) possibly_damaging(0.584) TCGA-94-A4VJ-01 9 139402468 139402468 G C NOTCH1 Nonsense_Mutation p.S1150* 0.46 TCGA-94-A4VJ-01 9 140777319 140777319 G A CACNA1B Missense_Mutation p.V172M 0.10 deleterious(0.01) possibly_damaging(0.502) TCGA-94-A4VJ-01 9 35102736 35102736 G A STOML2 Nonsense_Mutation p.Q44* 0.21 TCGA-94-A4VJ-01 9 35811973 35811973 C T SPAG8 Missense_Mutation p.E24K 0.19 deleterious_low_confidence(0.01) unknown(0) TCGA-94-A4VJ-01 9 70177146 70177146 C A FOXD4L5 Missense_Mutation p.G280W 0.27 deleterious(0) possibly_damaging(0.815) TCGA-94-A4VJ-01 9 70177579 70177579 G C FOXD4L5 Missense_Mutation p.C135W 0.26 deleterious(0.02) probably_damaging(0.996) TCGA-94-A4VJ-01 9 98244207 98244207 C T PTCH1 Intron 0.33 TCGA-94-A4VJ-01 X 113949657 113949657 G A HTR2C Intron 0.29 TCGA-94-A4VJ-01 X 14883101 14883101 T G FANCB Missense_Mutation p.N178H 0.23 deleterious(0.01) probably_damaging(0.982) TCGA-94-A4VJ-01 X 14933792 14933792 G T MOSPD2 Silent p.V364V 0.20 TCGA-94-A4VJ-01 X 151900604 151900604 T A MAGEA12 Missense_Mutation p.Q66L 0.22 deleterious(0) benign(0.188) TCGA-94-A4VJ-01 X 152818536 152818536 C A ATP2B3 Silent p.R623R 0.49 TCGA-94-A4VJ-01 X 153577354 153577354 C T FLNA Missense_Mutation p.E2603K 0.30 deleterious(0) probably_damaging(0.953) TCGA-94-A4VJ-01 X 153940864 153940864 G T GAB3 Missense_Mutation p.H237N 0.18 tolerated(0.33) benign(0.001) TCGA-94-A4VJ-01 X 15706819 15706819 G T CA5BP1 RNA 0.28 TCGA-94-A4VJ-01 X 17047711 17047711 A G REPS2 Missense_Mutation p.T246A 0.15 tolerated(0.77) benign(0.001) TCGA-94-A4VJ-01 X 17818933 17818933 T C RAI2 Missense_Mutation p.S400G 0.18 tolerated(0.43) unknown(0) TCGA-94-A4VJ-01 X 19009040 19009040 C A GPR64 Missense_Mutation p.R999L 0.17 deleterious_low_confidence(0.01) probably_damaging(0.932) TCGA-94-A4VJ-01 X 20173380 20173380 C A RPS6KA3 3'UTR 0.51 TCGA-94-A4VJ-01 X 2184786 2184786 C A DHRSX Missense_Mutation p.Q197H 0.18 tolerated(0.13) benign(0.029) TCGA-94-A4VJ-01 X 22231020 22231020 G T PHEX Splice_Site p.X549_splice 0.18 TCGA-94-A4VJ-01 X 230820 230820 A G GTPBP6 Missense_Mutation p.S23P 0.16 deleterious(0.05) benign(0.199) TCGA-94-A4VJ-01 X 27766755 27766755 G T DCAF8L2 Missense_Mutation p.W581C 0.26 deleterious(0.04) benign(0.102) TCGA-94-A4VJ-01 X 27839538 27839538 C G MAGEB10 Missense_Mutation p.P39A 0.17 tolerated(0.14) benign(0.044) TCGA-94-A4VJ-01 X 30260286 30260286 C T MAGEB4 Missense_Mutation p.R12C 0.18 deleterious(0.04) possibly_damaging(0.597) TCGA-94-A4VJ-01 X 31089911 31089911 G T FTHL17 Missense_Mutation p.R54S 0.32 tolerated(0.14) benign(0.089) TCGA-94-A4VJ-01 X 31164459 31164459 T C DMD Missense_Mutation p.S3624G 0.20 benign(0.294) TCGA-94-A4VJ-01 X 32360356 32360356 G T DMD Missense_Mutation p.A1928E 0.29 possibly_damaging(0.765) TCGA-94-A4VJ-01 X 32486827 32486827 C A DMD Missense_Mutation p.A984S 0.12 probably_damaging(0.946) TCGA-94-A4VJ-01 X 41043259 41043259 A G USP9X Missense_Mutation p.T1053A 0.15 tolerated(0.11) benign(0.001) TCGA-94-A4VJ-01 X 43603394 43603394 C T MAOA Silent p.I471I 0.25 TCGA-94-A4VJ-01 X 48046273 48046273 C - SSX5 3'UTR 0.10 TCGA-94-A4VJ-01 X 48382269 48382269 C A EBP Missense_Mutation p.S37Y 0.32 deleterious(0.01) possibly_damaging(0.906) TCGA-94-A4VJ-01 X 48650365 48650365 C A GATA1 Missense_Mutation p.T112N 0.33 tolerated(0.3) benign(0.004) TCGA-94-A4VJ-01 X 49075158 49075158 A G CACNA1F Missense_Mutation p.F935L 0.47 deleterious(0.02) benign(0.06) TCGA-94-A4VJ-01 X 49104115 49104115 G C CCDC22 Silent p.T326T 0.36 TCGA-94-A4VJ-01 X 53112166 53112166 G T TSPYL2 Silent p.P162P 0.31 TCGA-94-A4VJ-01 X 53565964 53565964 G T HUWE1 Missense_Mutation p.R3904S 0.29 unknown(0) TCGA-94-A4VJ-01 X 57162518 57162518 G T SPIN2A Silent p.V171V 0.13 TCGA-94-A4VJ-01 X 601812 601812 C A SHOX Missense_Mutation p.P208H 0.14 deleterious(0.02) probably_damaging(0.996) TCGA-94-A4VJ-01 X 70349991 70349991 G T MED12 Missense_Mutation p.C1325F 0.48 possibly_damaging(0.824) TCGA-94-A4VJ-01 X 70462833 70462833 T A ZMYM3 Silent p.T1178T 0.17 TCGA-94-A4VJ-01 X 7811273 7811273 C A VCX Missense_Mutation p.P10H 0.07 deleterious_low_confidence(0) unknown(0) TCGA-94-A4VJ-01 X 9862626 9862626 A T SHROOM2 Missense_Mutation p.K226N 0.14 tolerated(0.27) benign(0.124) TCGA-94-A5I4-01 10 100249890 100249890 C A HPSE2 Missense_Mutation p.A462S 0.55 tolerated(0.18) probably_damaging(0.993) TCGA-94-A5I4-01 10 115515034 115515034 A T PLEKHS1 5'UTR 0.41 TCGA-94-A5I4-01 10 12160871 12160871 G A DHTKD1 Silent p.P842P 0.43 TCGA-94-A5I4-01 10 22029158 22029158 A C MLLT10 Missense_Mutation p.K1052T 0.36 deleterious(0) probably_damaging(0.996) TCGA-94-A5I4-01 10 23319720 23319720 G T ARMC3 Silent p.L747L 0.35 TCGA-94-A5I4-01 10 27692213 27692213 C T PTCHD3 Missense_Mutation p.G429S 0.55 tolerated(0.76) benign(0.067) TCGA-94-A5I4-01 10 50819358 50819358 T A SLC18A3 Missense_Mutation p.F191Y 0.57 deleterious(0.02) probably_damaging(0.992) TCGA-94-A5I4-01 10 7769692 7769692 C A ITIH2 Silent p.R394R 0.35 TCGA-94-A5I4-01 10 8007082 8007082 G T TAF3 Nonsense_Mutation p.E537* 0.44 TCGA-94-A5I4-01 11 100999187 100999187 C T PGR Nonsense_Mutation p.W205* 0.57 TCGA-94-A5I4-01 11 105481748 105481748 T G GRIA4 Missense_Mutation p.I8M 0.48 tolerated_low_confidence(0.26) benign(0.002) TCGA-94-A5I4-01 11 114027057 114027057 A G ZBTB16 Splice_Site p.X423_splice 0.38 TCGA-94-A5I4-01 11 118443256 118443256 C T ARCN1 5'UTR 0.42 TCGA-94-A5I4-01 11 121474930 121474930 C A SORL1 Missense_Mutation p.S1516R 0.36 tolerated(0.08) benign(0.261) TCGA-94-A5I4-01 11 122720897 122720897 C T CRTAM Silent p.F56F 0.38 TCGA-94-A5I4-01 11 122828183 122828183 C G C11orf63 Missense_Mutation p.A708G 0.26 deleterious(0.01) benign(0.373) TCGA-94-A5I4-01 11 123894335 123894335 G T OR10G9 Missense_Mutation p.A206S 0.38 tolerated(0.42) benign(0.114) TCGA-94-A5I4-01 11 124440552 124440552 C T OR8A1 Silent p.D196D 0.20 TCGA-94-A5I4-01 11 1272531 1272531 C T MUC5B Silent p.A4807A 0.16 TCGA-94-A5I4-01 11 129724658 129724658 A G TMEM45B Missense_Mutation p.H111R 0.15 tolerated(0.53) benign(0.004) TCGA-94-A5I4-01 11 33620508 33620508 C A KIAA1549L Intron 0.43 TCGA-94-A5I4-01 11 47593312 47593312 C G PTPMT1 3'UTR 0.31 TCGA-94-A5I4-01 11 47681690 47681690 C T AGBL2 3'UTR 0.23 TCGA-94-A5I4-01 11 50004036 50004036 A T OR4C12 Translation_Start_Site p.M1? 0.30 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-94-A5I4-01 11 5373580 5373580 C - OR51B6 Frame_Shift_Del p.P282Hfs*4 0.12 TCGA-94-A5I4-01 11 55110774 55110774 A T OR4A16 Missense_Mutation p.Y33F 0.40 deleterious_low_confidence(0.01) probably_damaging(0.921) TCGA-94-A5I4-01 11 55433136 55433136 C A OR4C6 Missense_Mutation p.P165H 0.34 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-94-A5I4-01 11 55872934 55872934 G T OR8H2 Missense_Mutation p.R139M 0.07 deleterious(0.02) possibly_damaging(0.737) TCGA-94-A5I4-01 11 55889862 55889862 G T OR8H3 Missense_Mutation p.R5M 0.36 tolerated(0.1) benign(0.218) TCGA-94-A5I4-01 11 55890264 55890264 G T OR8H3 Missense_Mutation p.R139M 0.31 deleterious(0.02) possibly_damaging(0.81) TCGA-94-A5I4-01 11 56020088 56020088 G A OR5T3 Missense_Mutation p.G138E 0.37 deleterious(0.01) possibly_damaging(0.696) TCGA-94-A5I4-01 11 56184873 56184873 G C OR5R1 Missense_Mutation p.T279R 0.41 deleterious(0) probably_damaging(0.958) TCGA-94-A5I4-01 11 563443 563443 T C RASSF7 Silent p.S333S 0.22 TCGA-94-A5I4-01 11 59189944 59189944 T C OR5A2 Silent p.T161T 0.47 TCGA-94-A5I4-01 11 77348645 77348645 T C CLNS1A Missense_Mutation p.I39V 0.46 tolerated(0.34) benign(0.016) TCGA-94-A5I4-01 11 8118888 8118888 C T TUB Silent p.C322C 0.04 TCGA-94-A5I4-01 11 85345130 85345130 G A TMEM126B Missense_Mutation p.M68I 0.42 tolerated(0.18) benign(0.229) TCGA-94-A5I4-01 11 94732159 94732159 G T KDM4D 3'UTR 0.38 TCGA-94-A5I4-01 12 102468819 102468819 A G NUP37 Missense_Mutation p.M276T 0.42 tolerated(0.3) benign(0.002) TCGA-94-A5I4-01 12 10342711 10342711 C T TMEM52B Missense_Mutation p.S155L 0.42 deleterious_low_confidence(0.02) benign(0.09) TCGA-94-A5I4-01 12 111748299 111748299 C T CUX2 Silent p.I571I 0.18 TCGA-94-A5I4-01 12 112707530 112707530 T C HECTD4 Missense_Mutation p.K623E 0.53 benign(0.004) TCGA-94-A5I4-01 12 11546691 11546691 C A PRB2 Missense_Mutation p.K107N 0.37 tolerated(0.28) unknown(0) TCGA-94-A5I4-01 12 133250164 133250164 G A POLE Silent p.P452P 0.39 TCGA-94-A5I4-01 12 14849338 14849338 G T GUCY2C Missense_Mutation p.F15L 0.20 tolerated_low_confidence(0.7) benign(0) TCGA-94-A5I4-01 12 18234404 18234404 A T RERGL Silent p.A113A 0.27 TCGA-94-A5I4-01 12 25256810 25256810 A G LRMP Missense_Mutation p.R325G 0.49 tolerated(0.06) probably_damaging(0.999) TCGA-94-A5I4-01 12 4737065 4737065 C T AKAP3 Missense_Mutation p.D335N 0.29 deleterious(0) probably_damaging(1) TCGA-94-A5I4-01 12 49086856 49086856 G T CCNT1 Missense_Mutation p.P714Q 0.37 deleterious_low_confidence(0) unknown(0) TCGA-94-A5I4-01 12 56845017 56845017 C T MIP 3'UTR 0.43 TCGA-94-A5I4-01 12 57350942 57350942 C G RDH16 Missense_Mutation p.R102T 0.23 deleterious(0) benign(0.004) TCGA-94-A5I4-01 12 57985016 57985016 C A PIP4K2C 5'Flank 0.43 TCGA-94-A5I4-01 12 72007127 72007127 C A ZFC3H1 Missense_Mutation p.G1872V 0.14 tolerated(0.08) benign(0.227) TCGA-94-A5I4-01 12 7463182 7463182 C T ACSM4 Missense_Mutation p.L154F 0.44 tolerated(0.12) benign(0.089) TCGA-94-A5I4-01 12 75444785 75444785 C T KCNC2 Missense_Mutation p.G334R 0.11 tolerated(0.15) probably_damaging(0.998) TCGA-94-A5I4-01 12 82070578 82070578 C T PPFIA2 Missense_Mutation p.D99N 0.22 tolerated_low_confidence(0.71) benign(0) TCGA-94-A5I4-01 12 94244068 94244068 G T CRADD 3'UTR 0.39 TCGA-94-A5I4-01 13 111155496 111155496 T A COL4A2 Silent p.G1302G 0.58 TCGA-94-A5I4-01 13 21549002 21549002 C A LATS2 3'UTR 0.48 TCGA-94-A5I4-01 13 38266178 38266178 G A TRPC4 Missense_Mutation p.P398S 0.57 tolerated(0.09) benign(0.335) TCGA-94-A5I4-01 13 73284337 73284337 T C MZT1 3'UTR 0.53 TCGA-94-A5I4-01 13 73284345 73284345 T G MZT1 3'UTR 0.52 TCGA-94-A5I4-01 14 23854224 23854224 C A MYH6 Missense_Mutation p.K1730N 0.63 deleterious(0.01) probably_damaging(1) TCGA-94-A5I4-01 14 70515499 70515499 C T SLC8A3 Missense_Mutation p.G798S 0.72 deleterious(0) probably_damaging(0.993) TCGA-94-A5I4-01 14 70634709 70634709 G C SLC8A3 Missense_Mutation p.S144C 0.59 deleterious(0) probably_damaging(1) TCGA-94-A5I4-01 14 72818803 72818803 A C RGS6 Missense_Mutation p.I29L 0.55 tolerated(0.1) benign(0.021) TCGA-94-A5I4-01 14 92047339 92047339 C A CATSPERB Missense_Mutation p.G1082V 0.57 deleterious(0) benign(0.26) TCGA-94-A5I4-01 15 102198041 102198041 G A TARSL2 Missense_Mutation p.R698C 0.33 deleterious(0.04) benign(0.066) TCGA-94-A5I4-01 15 102300694 102300694 G T DNM1P47 RNA 0.21 TCGA-94-A5I4-01 15 22368834 22368834 G C OR4M2 Missense_Mutation p.V87L 0.22 tolerated(0.2) benign(0.05) TCGA-94-A5I4-01 15 22473191 22473191 C T IGHV4OR15-8 Missense_Mutation p.G27D 0.17 deleterious(0.01) possibly_damaging(0.88) TCGA-94-A5I4-01 15 23687623 23687623 G T GOLGA6L2 Silent p.A208A 0.18 TCGA-94-A5I4-01 15 24922883 24922883 A G NPAP1 Silent p.P623P 0.35 TCGA-94-A5I4-01 15 25339234 25339234 G T SNORD116-24 RNA 0.25 TCGA-94-A5I4-01 15 25947216 25947216 G A ATP10A Silent p.D869D 0.18 TCGA-94-A5I4-01 15 25981266 25981266 G A ATP10A Missense_Mutation p.T226M 0.26 tolerated(0.12) benign(0.067) TCGA-94-A5I4-01 15 30025499 30025499 T G TJP1 Missense_Mutation p.E512A 0.23 tolerated(0.31) benign(0.059) TCGA-94-A5I4-01 15 41347458 41347458 A G INO80 Silent p.S725S 0.35 TCGA-94-A5I4-01 15 45706845 45706845 A G SPATA5L1 Missense_Mutation p.Y504C 0.39 deleterious(0.04) benign(0.337) TCGA-94-A5I4-01 15 54919169 54919169 G T UNC13C Missense_Mutation p.W2168L 0.27 deleterious_low_confidence(0) benign(0.055) TCGA-94-A5I4-01 15 74743180 74743180 G C UBL7 Missense_Mutation p.L165V 0.45 deleterious(0.01) probably_damaging(0.991) TCGA-94-A5I4-01 15 75980303 75980303 G A CSPG4 Missense_Mutation p.R1035W 0.37 deleterious(0) probably_damaging(0.999) TCGA-94-A5I4-01 15 77906562 77906562 T C LINGO1 Missense_Mutation p.M563V 0.35 deleterious(0) possibly_damaging(0.762) TCGA-94-A5I4-01 15 79603665 79603665 G T TMED3 Missense_Mutation p.C25F 0.47 tolerated(0.71) benign(0.002) TCGA-94-A5I4-01 15 85342401 85342401 C G ZNF592 Missense_Mutation p.R1033G 0.28 deleterious(0) probably_damaging(0.999) TCGA-94-A5I4-01 15 90344720 90344720 T A ANPEP Missense_Mutation p.Q563L 0.20 deleterious(0) probably_damaging(0.998) TCGA-94-A5I4-01 16 18869558 18869558 C A SMG1 Missense_Mutation p.V1390L 0.33 tolerated(0.24) benign(0.292) TCGA-94-A5I4-01 16 20488726 20488726 C A ACSM2A Silent p.I378I 0.31 TCGA-94-A5I4-01 16 20636787 20636787 C T ACSM1 Silent p.A495A 0.14 TCGA-94-A5I4-01 16 20976568 20976568 C T DNAH3 Missense_Mutation p.A2880T 0.33 deleterious(0) probably_damaging(1) TCGA-94-A5I4-01 16 20999312 20999312 G A DNAH3 Missense_Mutation p.S2226L 0.41 deleterious(0.04) possibly_damaging(0.612) TCGA-94-A5I4-01 16 26147473 26147473 C A HS3ST4 Silent p.I425I 0.25 TCGA-94-A5I4-01 16 2815248 2815248 T G SRRM2 Silent p.L1573L 0.35 TCGA-94-A5I4-01 16 3820763 3820763 C G CREBBP Silent p.G896G 0.40 TCGA-94-A5I4-01 16 53907766 53907766 C T FTO Nonsense_Mutation p.R322* 0.36 TCGA-94-A5I4-01 16 61760991 61760991 T A CDH8 Intron 0.54 TCGA-94-A5I4-01 16 61760995 61760995 T A CDH8 Intron 0.55 TCGA-94-A5I4-01 16 7568180 7568180 C T RBFOX1 Missense_Mutation p.T40I 0.35 deleterious(0) probably_damaging(0.999) TCGA-94-A5I4-01 16 81157382 81157382 G T PKD1L2 RNA 0.55 TCGA-94-A5I4-01 17 21202227 21202227 A G MAP2K3 Missense_Mutation p.I52V 0.26 tolerated(0.14) benign(0.014) TCGA-94-A5I4-01 17 34235377 34235377 G T AC015849.16 RNA 0.30 TCGA-94-A5I4-01 17 5058833 5058833 T A USP6 Silent p.V920V 0.06 TCGA-94-A5I4-01 17 51902210 51902210 G C KIF2B Missense_Mutation p.G606R 0.39 tolerated(0.54) benign(0.052) TCGA-94-A5I4-01 17 55752484 55752484 A T MSI2 Silent p.I314I 0.35 TCGA-94-A5I4-01 17 60744853 60744854 - C MRC2 Frame_Shift_Ins p.K360Qfs*95 0.32 TCGA-94-A5I4-01 17 66878745 66878745 C T ABCA8 Missense_Mutation p.D1235N 0.33 tolerated(0.11) benign(0.013) TCGA-94-A5I4-01 17 72281244 72281244 G A DNAI2 Silent p.K83K 0.38 TCGA-94-A5I4-01 17 7576851 7576851 A G TP53 Splice_Site p.X331_splice 0.61 TCGA-94-A5I4-01 17 79684053 79684053 C A SLC25A10 Nonsense_Mutation p.S162* 0.36 TCGA-94-A5I4-01 17 80789716 80789716 G T ZNF750 Nonsense_Mutation p.Y205* 0.36 TCGA-94-A5I4-01 18 14106262 14106262 C G ZNF519 Missense_Mutation p.G93R 0.42 tolerated(0.67) benign(0.249) TCGA-94-A5I4-01 18 14184207 14184207 C A ANKRD20A5P Intron 0.38 TCGA-94-A5I4-01 18 14542891 14542891 G A POTEC Silent p.D85D 0.31 TCGA-94-A5I4-01 18 32650204 32650204 G T MAPRE2 Missense_Mutation p.E56D 0.53 tolerated(0.82) possibly_damaging(0.734) TCGA-94-A5I4-01 18 333138 333138 G T COLEC12 Missense_Mutation p.P608T 0.46 deleterious(0.01) unknown(0) TCGA-94-A5I4-01 18 5416131 5416131 G - EPB41L3 Frame_Shift_Del p.L585Cfs*16 0.26 TCGA-94-A5I4-01 18 57103145 57103145 G A CCBE1 Missense_Mutation p.P406S 0.52 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-94-A5I4-01 18 674386 674386 T A ENOSF1 Missense_Mutation p.E424D 0.25 deleterious(0.02) benign(0.375) TCGA-94-A5I4-01 18 72913967 72913967 C A ZADH2 Missense_Mutation p.A180S 0.58 deleterious(0) probably_damaging(0.941) TCGA-94-A5I4-01 18 77894143 77894143 C A ADNP2 Missense_Mutation p.P283T 0.55 tolerated(0.06) benign(0.117) TCGA-94-A5I4-01 18 9257523 9257523 G C ANKRD12 Missense_Mutation p.E1420Q 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.501) TCGA-94-A5I4-01 19 10097029 10097029 C T COL5A3 Missense_Mutation p.A772T 0.09 unknown(0) TCGA-94-A5I4-01 19 13216397 13216397 C T TRMT1 Missense_Mutation p.R536Q 0.40 tolerated(0.05) possibly_damaging(0.848) TCGA-94-A5I4-01 19 14034211 14034211 T C CC2D1A Silent p.S569S 0.20 TCGA-94-A5I4-01 19 14749063 14749063 G A EMR3 Silent p.L446L 0.27 TCGA-94-A5I4-01 19 30308140 30308140 A T CCNE1 Nonsense_Mutation p.K93* 0.32 TCGA-94-A5I4-01 19 35941639 35941639 G T FFAR2 3'UTR 0.29 TCGA-94-A5I4-01 19 38905611 38905611 C T RASGRP4 Silent p.L369L 0.16 TCGA-94-A5I4-01 19 41063069 41063069 C A SPTBN4 Missense_Mutation p.D1810E 0.32 deleterious(0.01) possibly_damaging(0.9) TCGA-94-A5I4-01 19 47994097 47994097 T A NAPA Missense_Mutation p.Y228F 0.19 deleterious(0.04) possibly_damaging(0.84) TCGA-94-A5I4-01 19 53217377 53217377 C A ZNF611 Silent p.R27R 0.55 TCGA-94-A5I4-01 19 53342955 53342955 G T ZNF468 3'UTR 1.00 TCGA-94-A5I4-01 19 54080086 54080086 G C ZNF331 Missense_Mutation p.R91T 0.53 tolerated(0.5) benign(0.007) TCGA-94-A5I4-01 19 54210753 54210753 A G MIR520C RNA 0.61 TCGA-94-A5I4-01 19 54848909 54848909 C G LILRA4 Missense_Mutation p.E238D 0.50 tolerated(0.13) benign(0.026) TCGA-94-A5I4-01 19 54967610 54967610 G T LENG8 Missense_Mutation p.D471Y 0.54 deleterious(0.01) probably_damaging(0.982) TCGA-94-A5I4-01 19 55645265 55645265 C G TNNT1 Missense_Mutation p.A261P 0.58 tolerated(0.21) probably_damaging(1) TCGA-94-A5I4-01 19 55668002 55668002 T C TNNI3 Missense_Mutation p.K40R 0.50 tolerated(0.26) benign(0.063) TCGA-94-A5I4-01 19 7163130 7163130 G C INSR Missense_Mutation p.P648A 0.24 tolerated(0.06) probably_damaging(0.999) TCGA-94-A5I4-01 19 9049058 9049058 C G MUC16 Missense_Mutation p.G10858A 0.40 benign(0.007) TCGA-94-A5I4-01 19 9049892 9049892 C T MUC16 Missense_Mutation p.S10580N 0.23 benign(0.145) TCGA-94-A5I4-01 19 9083469 9083469 C A MUC16 Missense_Mutation p.R2782S 0.23 unknown(0) TCGA-94-A5I4-01 19 9087741 9087741 G T MUC16 Silent p.S1358S 0.38 TCGA-94-A5I4-01 19 9091192 9091192 A T MUC16 Missense_Mutation p.V208E 0.20 unknown(0) TCGA-94-A5I4-01 1 104112950 104112950 G C AMY2B Intron 0.62 TCGA-94-A5I4-01 1 110086055 110086055 T A GPR61 Missense_Mutation p.N137K 0.50 deleterious(0) probably_damaging(0.975) TCGA-94-A5I4-01 1 12837411 12837411 G T PRAMEF12 Missense_Mutation p.R374L 0.53 tolerated(0.1) benign(0.131) TCGA-94-A5I4-01 1 155217621 155217621 G A FAM189B Silent p.R653R 0.27 TCGA-94-A5I4-01 1 15783230 15783230 G A CELA2A 5'UTR 0.53 TCGA-94-A5I4-01 1 158300844 158300844 C A CD1B Missense_Mutation p.G24W 0.52 deleterious(0.01) probably_damaging(0.98) TCGA-94-A5I4-01 1 158725466 158725466 G A OR6K6 Silent p.L287L 0.55 TCGA-94-A5I4-01 1 158747211 158747211 C A OR6N2 Missense_Mutation p.W72L 0.46 deleterious(0) benign(0.434) TCGA-94-A5I4-01 1 160851950 160851950 T A ITLN1 Missense_Mutation p.T68S 0.53 deleterious(0.02) probably_damaging(0.999) TCGA-94-A5I4-01 1 173523939 173523939 T C SLC9C2 Silent p.V410V 0.45 TCGA-94-A5I4-01 1 202276519 202276519 C G LGR6 Missense_Mutation p.L424V 0.43 deleterious(0) probably_damaging(0.999) TCGA-94-A5I4-01 1 204518262 204518262 T A MDM4 Missense_Mutation p.C309S 0.14 deleterious(0) probably_damaging(0.996) TCGA-94-A5I4-01 1 207669733 207669733 G A CR1 Missense_Mutation p.G41S 0.54 tolerated_low_confidence(0.14) benign(0.27) TCGA-94-A5I4-01 1 22852789 22852789 C G ZBTB40 Missense_Mutation p.P1207R 0.66 deleterious(0) benign(0.001) TCGA-94-A5I4-01 1 233105856 233105856 G T NTPCR Missense_Mutation p.V166L 0.20 tolerated(0.14) benign(0.023) TCGA-94-A5I4-01 1 236920902 236920902 G A ACTN2 Silent p.E757E 0.23 TCGA-94-A5I4-01 1 238090518 238090518 C T RP11-193H5.1 RNA 0.52 TCGA-94-A5I4-01 1 247614465 247614465 G T OR2B11 Missense_Mutation p.Q274K 0.46 tolerated(0.11) probably_damaging(0.981) TCGA-94-A5I4-01 1 248309193 248309193 G T OR2M5 Silent p.V248V 0.36 TCGA-94-A5I4-01 1 248309194 248309194 G T OR2M5 Nonsense_Mutation p.G249* 0.37 TCGA-94-A5I4-01 1 26386835 26386835 A G TRIM63 Silent p.C173C 0.57 TCGA-94-A5I4-01 1 32381495 32381495 C A PTP4A2 Splice_Site p.X63_splice 0.54 TCGA-94-A5I4-01 1 32841872 32841872 C A BSDC1 Nonsense_Mutation p.G400* 0.51 TCGA-94-A5I4-01 1 3806416 3806416 T C C1orf174 3'UTR 0.55 TCGA-94-A5I4-01 1 75065388 75065388 C A C1orf173 Missense_Mutation p.D573Y 0.47 deleterious(0) probably_damaging(0.982) TCGA-94-A5I4-01 1 94528670 94528670 G T ABCA4 Missense_Mutation p.D586E 0.60 deleterious(0.01) probably_damaging(0.994) TCGA-94-A5I4-01 1 9714552 9714552 C A C1orf200 5'UTR 0.69 TCGA-94-A5I4-01 20 1616027 1616027 C - SIRPG Frame_Shift_Del p.D323Mfs*9 0.30 TCGA-94-A5I4-01 20 22563398 22563398 T C FOXA2 Missense_Mutation p.Y161C 0.28 deleterious(0) probably_damaging(0.996) TCGA-94-A5I4-01 20 23860146 23860146 G T CST5 Missense_Mutation p.N56K 0.30 deleterious(0.03) probably_damaging(1) TCGA-94-A5I4-01 20 2847111 2847111 A T VPS16 Missense_Mutation p.H804L 0.35 tolerated(0.07) benign(0.119) TCGA-94-A5I4-01 20 2945621 2945621 C T PTPRA Missense_Mutation p.P63L 0.35 deleterious_low_confidence(0.01) benign(0.005) TCGA-94-A5I4-01 20 30617557 30617557 G T CCM2L Silent p.G418G 0.32 TCGA-94-A5I4-01 20 31374381 31374381 G A DNMT3B Missense_Mutation p.R127Q 0.38 deleterious_low_confidence(0.04) probably_damaging(0.974) TCGA-94-A5I4-01 20 3644028 3644028 G A GFRA4 Missense_Mutation p.P7S 0.58 tolerated(0.48) benign(0.021) TCGA-94-A5I4-01 20 60318787 60318787 G T CDH4 Missense_Mutation p.W113L 0.25 tolerated(0.13) benign(0.175) TCGA-94-A5I4-01 20 8665722 8665722 A T PLCB1 Missense_Mutation p.T336S 0.33 deleterious(0.01) benign(0.292) TCGA-94-A5I4-01 20 9453935 9453935 A C PLCB4 Missense_Mutation p.K1128Q 0.40 deleterious(0.05) possibly_damaging(0.675) TCGA-94-A5I4-01 21 30699551 30699551 C T BACH1 Missense_Mutation p.T469I 0.63 deleterious(0) benign(0.146) TCGA-94-A5I4-01 22 19865678 19865678 C A TXNRD2 Silent p.V460V 0.20 TCGA-94-A5I4-01 22 21384318 21384318 C T SLC7A4 Silent p.Q435Q 0.33 TCGA-94-A5I4-01 22 22899351 22899351 C T PRAME 5'UTR 0.30 TCGA-94-A5I4-01 22 24964104 24964104 A C SNRPD3 Silent p.S93S 0.29 TCGA-94-A5I4-01 22 32241065 32241065 G A DEPDC5 Missense_Mutation p.A946T 0.33 deleterious(0.01) benign(0.266) TCGA-94-A5I4-01 22 33327382 33327382 C A SYN3 Missense_Mutation p.V152L 0.34 deleterious(0) unknown(0) TCGA-94-A5I4-01 22 38121239 38121239 C A TRIOBP Silent p.P892P 0.35 TCGA-94-A5I4-01 22 50479636 50479636 G A TTLL8 Intron 0.34 TCGA-94-A5I4-01 2 101889466 101889466 G A CNOT11 3'Flank 0.40 TCGA-94-A5I4-01 2 101893632 101893633 - A RNF149 3'UTR 0.47 TCGA-94-A5I4-01 2 106497936 106497936 G T NCK2 Nonsense_Mutation p.E127* 0.41 TCGA-94-A5I4-01 2 110905497 110905497 C T NPHP1 Missense_Mutation p.R478H 0.40 deleterious(0.03) benign(0.286) TCGA-94-A5I4-01 2 119752176 119752176 C A MARCO 3'UTR 0.42 TCGA-94-A5I4-01 2 128393818 128393818 G A MYO7B Silent p.K1988K 0.40 TCGA-94-A5I4-01 2 130949369 130949369 A G TUBA3E 3'UTR 0.20 TCGA-94-A5I4-01 2 132240457 132240457 G A TUBA3D 3'UTR 0.09 TCGA-94-A5I4-01 2 132288220 132288220 G T CCDC74A Nonsense_Mutation p.G122* 0.30 TCGA-94-A5I4-01 2 135309662 135309662 G A TMEM163 Missense_Mutation p.T108I 0.37 deleterious(0.02) possibly_damaging(0.578) TCGA-94-A5I4-01 2 149243343 149243343 A T MBD5 Missense_Mutation p.N960Y 0.23 deleterious_low_confidence(0.03) unknown(0) TCGA-94-A5I4-01 2 158165160 158165160 G A GALNT5 Missense_Mutation p.V868I 0.34 tolerated(0.17) benign(0.001) TCGA-94-A5I4-01 2 166165304 166165304 C A SCN2A Missense_Mutation p.A202E 0.24 deleterious(0.04) possibly_damaging(0.872) TCGA-94-A5I4-01 2 166904170 166904170 C T SCN1A Missense_Mutation p.M379I 0.43 deleterious(0) probably_damaging(0.985) TCGA-94-A5I4-01 2 167992474 167992474 G A XIRP2 Missense_Mutation p.S155N 0.41 benign(0.004) TCGA-94-A5I4-01 2 168100344 168100344 C G XIRP2 Silent p.T814T 0.41 TCGA-94-A5I4-01 2 168107599 168107599 G T XIRP2 Missense_Mutation p.D3233Y 0.44 probably_damaging(0.946) TCGA-94-A5I4-01 2 175450254 175450254 T A WIPF1 Silent p.A16A 0.42 TCGA-94-A5I4-01 2 176989046 176989046 G T HOXD9 3'UTR 0.29 TCGA-94-A5I4-01 2 179497715 179497715 C A TTN Missense_Mutation p.Q14381H 0.43 TCGA-94-A5I4-01 2 179549437 179549437 A G TTN Missense_Mutation p.V10865A 0.31 TCGA-94-A5I4-01 2 179604822 179604822 T C TTN Missense_Mutation p.K4380E 0.45 TCGA-94-A5I4-01 2 179610475 179610475 C T TTN Intron 0.42 TCGA-94-A5I4-01 2 179665313 179665313 G A TTN Missense_Mutation p.P131L 0.32 TCGA-94-A5I4-01 2 192250709 192250709 A G MYO1B Missense_Mutation p.T485A 0.41 tolerated(0.15) benign(0.11) TCGA-94-A5I4-01 2 196545500 196545500 A G SLC39A10 Missense_Mutation p.E245G 0.19 tolerated(0.38) benign(0) TCGA-94-A5I4-01 2 197584287 197584287 G C CCDC150 Missense_Mutation p.E688Q 0.43 deleterious(0.04) benign(0.327) TCGA-94-A5I4-01 2 203420451 203420451 A T BMPR2 Missense_Mutation p.H688L 0.23 deleterious(0.01) probably_damaging(0.93) TCGA-94-A5I4-01 2 215275020 215275020 C A SPAG16 Missense_Mutation p.T626K 0.45 deleterious(0.02) possibly_damaging(0.643) TCGA-94-A5I4-01 2 216289964 216289964 G C FN1 Missense_Mutation p.Q297E 0.54 tolerated(0.86) benign(0.082) TCGA-94-A5I4-01 2 217124078 217124078 G C MARCH4 Missense_Mutation p.P397R 0.54 tolerated(0.05) benign(0) TCGA-94-A5I4-01 2 220075715 220075715 T C ABCB6 Missense_Mutation p.E695G 0.31 deleterious(0) possibly_damaging(0.552) TCGA-94-A5I4-01 2 228145178 228145178 C A COL4A3 Missense_Mutation p.P749H 0.53 unknown(0) TCGA-94-A5I4-01 2 24964937 24964937 A T NCOA1 Silent p.A1196A 0.38 TCGA-94-A5I4-01 2 28828797 28828797 A T PLB1 Missense_Mutation p.R1013S 0.37 deleterious(0.05) possibly_damaging(0.531) TCGA-94-A5I4-01 2 33783301 33783301 C T RASGRP3 Nonsense_Mutation p.Q535* 0.36 TCGA-94-A5I4-01 2 42990049 42990049 C T OXER1 Silent p.%3D 0.32 TCGA-94-A5I4-01 2 55252519 55252519 C A RTN4 Nonsense_Mutation p.G906* 0.36 TCGA-94-A5I4-01 2 71827841 71827841 G T DYSF Nonsense_Mutation p.E1256* 0.31 TCGA-94-A5I4-01 2 79971657 79971657 C A CTNNA2 Missense_Mutation p.Q83K 0.35 tolerated(0.2) benign(0.009) TCGA-94-A5I4-01 2 89986932 89986932 C A IGKV2D-29 Silent p.L71L 0.31 TCGA-94-A5I4-01 2 90108568 90108568 C A IGKV6D-41 Silent p.L13L 0.34 TCGA-94-A5I4-01 2 90260016 90260016 G T IGKV1D-8 Missense_Mutation p.R40I 0.30 deleterious(0) benign(0.187) TCGA-94-A5I4-01 3 130463614 130463614 T C PIK3R4 Missense_Mutation p.K150R 0.61 deleterious(0.01) probably_damaging(0.926) TCGA-94-A5I4-01 3 130650969 130650969 A G ATP2C1 Missense_Mutation p.K108R 0.58 tolerated(0.19) benign(0.099) TCGA-94-A5I4-01 3 133661456 133661456 C G SLCO2A1 Missense_Mutation p.V540L 0.71 deleterious(0.01) probably_damaging(0.999) TCGA-94-A5I4-01 3 14207048 14207048 C T XPC Missense_Mutation p.R220Q 0.55 tolerated(0.13) benign(0.221) TCGA-94-A5I4-01 3 148459441 148459441 C G AGTR1 Missense_Mutation p.P207A 0.55 deleterious(0) probably_damaging(1) TCGA-94-A5I4-01 3 154055623 154055623 G T GPR149 Silent p.I687I 0.12 TCGA-94-A5I4-01 3 195041506 195041506 C A ACAP2 Missense_Mutation p.V261L 0.11 tolerated(0.17) benign(0.07) TCGA-94-A5I4-01 3 39433056 39433056 G T SLC25A38 Missense_Mutation p.R134L 0.49 deleterious(0.01) probably_damaging(0.92) TCGA-94-A5I4-01 3 53844217 53844217 G T CACNA1D Missense_Mutation p.E2048D 0.49 tolerated_low_confidence(0.84) benign(0.001) TCGA-94-A5I4-01 3 62636624 62636624 G A CADPS Silent p.L367L 0.56 TCGA-94-A5I4-01 3 71247099 71247099 T C FOXP1 Missense_Mutation p.K101E 0.62 tolerated_low_confidence(0.18) benign(0.012) TCGA-94-A5I4-01 3 88202434 88202434 G A C3orf38 Missense_Mutation p.R63H 0.62 deleterious(0.03) benign(0.109) TCGA-94-A5I4-01 3 93699220 93699220 G T ARL13B 5'UTR 0.63 TCGA-94-A5I4-01 4 142949830 142949830 C - INPP4B 3'UTR 0.70 TCGA-94-A5I4-01 4 155665799 155665799 C G LRAT Missense_Mutation p.S107R 0.61 tolerated(0.06) benign(0.443) TCGA-94-A5I4-01 4 16077331 16077331 G C PROM1 Missense_Mutation p.Q67E 0.38 deleterious(0) probably_damaging(0.999) TCGA-94-A5I4-01 4 187628855 187628855 G C FAT1 Silent p.V709V 0.64 TCGA-94-A5I4-01 4 62845447 62845447 C A LPHN3 Missense_Mutation p.A923E 0.34 deleterious(0) possibly_damaging(0.759) TCGA-94-A5I4-01 4 70823342 70823342 A G CSN2 Missense_Mutation p.Y109H 0.33 tolerated(0.16) possibly_damaging(0.86) TCGA-94-A5I4-01 5 118470004 118470004 G C DMXL1 Missense_Mutation p.D766H 0.55 deleterious(0) probably_damaging(1) TCGA-94-A5I4-01 5 140203132 140203132 C A PCDHA5 Missense_Mutation p.A591E 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.558) TCGA-94-A5I4-01 5 140348807 140348807 C T PCDHAC2 Missense_Mutation p.P819L 0.60 tolerated(0.29) benign(0.03) TCGA-94-A5I4-01 5 140554365 140554365 C T PCDHB7 Missense_Mutation p.P650L 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.715) TCGA-94-A5I4-01 5 160721153 160721153 G A GABRB2 Missense_Mutation p.R492C 0.62 deleterious(0) probably_damaging(1) TCGA-94-A5I4-01 5 170883681 170883681 C T FGF18 Missense_Mutation p.R166W 0.62 deleterious(0) probably_damaging(0.935) TCGA-94-A5I4-01 5 179151695 179151695 C A CANX Missense_Mutation p.A519E 0.61 tolerated(0.61) benign(0.022) TCGA-94-A5I4-01 5 33576240 33576240 G T ADAMTS12 Silent p.G1297G 0.56 TCGA-94-A5I4-01 5 36035682 36035682 C A UGT3A2 3'UTR 0.60 TCGA-94-A5I4-01 6 101248332 101248332 C A ASCC3 Missense_Mutation p.C324F 0.39 deleterious(0.03) probably_damaging(0.947) TCGA-94-A5I4-01 6 127898421 127898421 C A C6orf58 Missense_Mutation p.P31T 0.16 deleterious(0.01) possibly_damaging(0.71) TCGA-94-A5I4-01 6 132649201 132649201 C A MOXD1 Silent p.P299P 0.46 TCGA-94-A5I4-01 6 136889004 136889004 G A MAP3K5 Missense_Mutation p.P1176S 0.37 tolerated(0.35) benign(0.154) TCGA-94-A5I4-01 6 152823809 152823809 G C SYNE1 Missense_Mutation p.P283A 0.14 probably_damaging(0.991) TCGA-94-A5I4-01 6 161006132 161006132 C T LPA Nonsense_Mutation p.W1412* 0.47 TCGA-94-A5I4-01 6 167571136 167571136 G T GPR31 Missense_Mutation p.L62M 0.08 deleterious(0) probably_damaging(0.991) TCGA-94-A5I4-01 6 169648567 169648567 G A THBS2 Missense_Mutation p.A185V 0.17 deleterious(0.02) benign(0.003) TCGA-94-A5I4-01 6 27420709 27420709 T A ZNF184 Missense_Mutation p.K210I 0.56 deleterious(0.04) benign(0.022) TCGA-94-A5I4-01 6 34741426 34741426 G C SNRPC 3'UTR 0.65 TCGA-94-A5I4-01 6 70071011 70071011 C G BAI3 Nonsense_Mutation p.Y1282* 0.64 TCGA-94-A5I4-01 6 70878575 70878575 T C COL19A1 Splice_Site p.X856_splice 0.09 TCGA-94-A5I4-01 6 78172631 78172631 T A HTR1B Nonsense_Mutation p.K164* 0.44 TCGA-94-A5I4-01 6 82920577 82920577 T G IBTK Missense_Mutation p.K821N 0.53 deleterious(0.01) benign(0.219) TCGA-94-A5I4-01 6 89673121 89673121 T A RNGTT Missense_Mutation p.H3L 0.23 tolerated_low_confidence(0.44) benign(0) TCGA-94-A5I4-01 6 90384193 90384193 G A MDN1 Silent p.L4293L 0.24 TCGA-94-A5I4-01 7 103180711 103180711 G C RELN Missense_Mutation p.S2288C 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-94-A5I4-01 7 122811960 122811960 T A SLC13A1 Splice_Site p.X77_splice 0.09 TCGA-94-A5I4-01 7 127961380 127961380 T C RBM28 Missense_Mutation p.K501R 0.70 tolerated(0.15) benign(0.038) TCGA-94-A5I4-01 7 142423238 142423238 A G TRBV27 Missense_Mutation p.Y8C 0.26 TCGA-94-A5I4-01 7 26904024 26904024 A T SKAP2 Missense_Mutation p.S9T 0.79 tolerated_low_confidence(0.25) benign(0.001) TCGA-94-A5I4-01 7 37989891 37989891 C T EPDR1 Missense_Mutation p.R190W 0.31 deleterious(0) probably_damaging(0.964) TCGA-94-A5I4-01 7 39504040 39504040 C G POU6F2 Missense_Mutation p.R611G 0.79 deleterious(0) unknown(0) TCGA-94-A5I4-01 7 88964665 88964665 C A ZNF804B Nonsense_Mutation p.S790* 0.23 TCGA-94-A5I4-01 8 105463537 105463537 C A DPYS Missense_Mutation p.W120C 0.26 deleterious(0.04) probably_damaging(0.916) TCGA-94-A5I4-01 8 141263021 141263021 C T TRAPPC9 Silent p.L860L 0.25 TCGA-94-A5I4-01 8 145763109 145763109 C T ARHGAP39 Silent p.P870P 0.20 TCGA-94-A5I4-01 8 16021644 16021644 G A MSR1 Silent p.N249N 0.55 TCGA-94-A5I4-01 8 22064961 22064961 G T BMP1 Missense_Mutation p.R836L 0.52 deleterious(0.03) benign(0.023) TCGA-94-A5I4-01 8 39634623 39634623 G A ADAM2 Missense_Mutation p.L317F 0.26 tolerated(0.06) benign(0.25) TCGA-94-A5I4-01 8 56699532 56699532 G C TGS1 Missense_Mutation p.A359P 0.20 tolerated(0.05) possibly_damaging(0.888) TCGA-94-A5I4-01 8 61765685 61765685 A G CHD7 Missense_Mutation p.N2134S 0.09 benign(0.014) TCGA-94-A5I4-01 8 61777886 61777886 G C CHD7 Silent p.L2796L 0.44 TCGA-94-A5I4-01 9 100616689 100616689 G C FOXE1 Missense_Mutation p.A165P 0.37 tolerated(0.56) benign(0.313) TCGA-94-A5I4-01 9 1053762 1053762 G A DMRT2 Missense_Mutation p.R189H 0.32 deleterious(0.01) possibly_damaging(0.537) TCGA-94-A5I4-01 9 108424838 108424838 G T TAL2 Missense_Mutation p.A21S 0.25 deleterious(0) probably_damaging(0.999) TCGA-94-A5I4-01 9 116854022 116854022 C T KIF12 3'UTR 0.27 TCGA-94-A5I4-01 9 116854040 116854040 A G KIF12 3'UTR 0.25 TCGA-94-A5I4-01 9 123605203 123605203 A C PSMD5 5'UTR 0.29 TCGA-94-A5I4-01 9 128122954 128122954 G T GAPVD1 Missense_Mutation p.V1425F 0.05 deleterious(0) probably_damaging(0.972) TCGA-94-A5I4-01 9 131477135 131477135 C A PKN3 Missense_Mutation p.S548Y 0.21 tolerated(0.07) benign(0.248) TCGA-94-A5I4-01 9 135152459 135152459 C T SETX Missense_Mutation p.R2308K 0.28 tolerated(0.23) benign(0.044) TCGA-94-A5I4-01 9 138588511 138588511 C A SOHLH1 Missense_Mutation p.C203F 0.23 tolerated(0.07) benign(0.144) TCGA-94-A5I4-01 9 21968186 21968186 G A CDKN2A 3'UTR 0.40 TCGA-94-A5I4-01 9 33466676 33466676 G A NOL6 Missense_Mutation p.A661V 0.57 tolerated(0.35) benign(0.002) TCGA-94-A5I4-01 9 71627898 71627898 C T PRKACG 3'UTR 0.33 TCGA-94-A5I4-01 9 74840678 74840678 A T GDA Missense_Mutation p.K267I 0.23 deleterious(0.01) possibly_damaging(0.833) TCGA-94-A5I4-01 X 101382450 101382450 C G TCEAL2 Silent p.A216A 0.60 TCGA-94-A5I4-01 X 106796054 106796054 T G FRMPD3 Silent p.L213L 0.64 TCGA-94-A5I4-01 X 110035324 110035324 T A CHRDL1 Missense_Mutation p.Q29L 0.71 tolerated(0.31) benign(0.103) TCGA-94-A5I4-01 X 114953402 114953402 G T RP1-241P17.4 Silent p.R50R 0.65 TCGA-94-A5I4-01 X 134994106 134994106 G - SAGE1 Frame_Shift_Del p.Q840Kfs*17 0.46 TCGA-94-A5I4-01 X 140335859 140335859 G T SPANXC Missense_Mutation p.P29T 0.41 deleterious(0.04) benign(0.112) TCGA-94-A5I4-01 X 140995221 140995221 G T MAGEC1 Missense_Mutation p.Q677H 0.65 deleterious_low_confidence(0) benign(0.216) TCGA-94-A5I4-01 X 152225537 152225537 C A PNMA3 Missense_Mutation p.A42D 0.71 deleterious(0.01) possibly_damaging(0.844) TCGA-94-A5I4-01 X 26157347 26157347 A G MAGEB18 Missense_Mutation p.N82S 0.58 tolerated(0.27) benign(0.1) TCGA-94-A5I4-01 X 48372915 48372915 A G PORCN Missense_Mutation p.D283G 0.63 tolerated(0.1) possibly_damaging(0.614) TCGA-94-A5I4-01 X 83723923 83723923 C A HDX Missense_Mutation p.V270F 0.65 deleterious(0.05) probably_damaging(0.999) TCGA-94-A5I6-01 10 106074039 106074039 C A ITPRIP 3'UTR 0.40 TCGA-94-A5I6-01 10 14861997 14861997 G T CDNF Missense_Mutation p.H182Q 0.31 tolerated(0.58) benign(0.004) TCGA-94-A5I6-01 11 103092843 103092843 A G DYNC2H1 Silent p.E3064E 0.23 TCGA-94-A5I6-01 11 124135543 124135543 G T OR8G5 Missense_Mutation p.S274I 0.29 deleterious(0) probably_damaging(0.954) TCGA-94-A5I6-01 11 34120858 34120858 G T CAPRIN1 Missense_Mutation p.G692W 0.16 deleterious_low_confidence(0) unknown(0) TCGA-94-A5I6-01 11 4567000 4567000 G T OR52M1 Missense_Mutation p.D194Y 0.14 deleterious(0) probably_damaging(0.993) TCGA-94-A5I6-01 11 49194993 49194993 A T FOLH1 Missense_Mutation p.W381R 0.11 deleterious(0) probably_damaging(1) TCGA-94-A5I6-01 11 5275581 5275581 A G HBG2 Missense_Mutation p.F86L 0.14 tolerated(0.08) benign(0.081) TCGA-94-A5I6-01 11 55657506 55657506 G A TRIM51 Missense_Mutation p.G284R 0.14 tolerated(0.54) benign(0.001) TCGA-94-A5I6-01 11 58170022 58170022 G A OR5B3 Silent p.V287V 0.11 TCGA-94-A5I6-01 11 58189821 58189821 C G OR5B2 Missense_Mutation p.R305T 0.24 deleterious_low_confidence(0.01) benign(0.006) TCGA-94-A5I6-01 11 6023832 6023832 G T OR56A4 Missense_Mutation p.H183N 0.21 tolerated(0.25) benign(0.012) TCGA-94-A5I6-01 11 82644311 82644311 G C C11orf82 Missense_Mutation p.R644T 0.13 tolerated(0.62) benign(0.006) TCGA-94-A5I6-01 12 10149505 10149505 A G CLEC1B Silent p.S126S 0.36 TCGA-94-A5I6-01 12 10573019 10573019 T C KLRC3 Missense_Mutation p.N44S 0.14 tolerated(0.21) benign(0.237) TCGA-94-A5I6-01 12 130184816 130184816 C A TMEM132D Missense_Mutation p.R169S 0.19 deleterious(0) possibly_damaging(0.662) TCGA-94-A5I6-01 12 43944856 43944856 G T ADAMTS20 Silent p.G103G 0.16 TCGA-94-A5I6-01 12 56221636 56221636 A T DNAJC14 Nonsense_Mutation p.C269* 0.19 TCGA-94-A5I6-01 12 58196040 58196040 C T AVIL Missense_Mutation p.G685D 0.11 deleterious(0.02) benign(0.02) TCGA-94-A5I6-01 12 99837513 99837513 C A ANKS1B Missense_Mutation p.D505Y 0.19 deleterious(0) probably_damaging(0.987) TCGA-94-A5I6-01 13 25418806 25418806 A T RNF17 Missense_Mutation p.I950L 0.22 tolerated(0.26) benign(0.01) TCGA-94-A5I6-01 13 76287390 76287390 T G RP11-29G8.3 Splice_Site 0.21 TCGA-94-A5I6-01 13 77581670 77581672 TTC - FBXL3 In_Frame_Del p.E299del 0.08 TCGA-94-A5I6-01 14 20249213 20249213 C A OR4M1 Silent p.S244S 0.14 TCGA-94-A5I6-01 14 20345321 20345321 A T OR4K2 Missense_Mutation p.R299W 0.13 deleterious(0.02) possibly_damaging(0.541) TCGA-94-A5I6-01 14 55310447 55310447 T - GCH1 3'UTR 0.24 TCGA-94-A5I6-01 14 79423686 79423686 G T NRXN3 Missense_Mutation p.D420Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-94-A5I6-01 15 22332428 22332428 C G RP11-69H14.6 RNA 0.04 TCGA-94-A5I6-01 15 22332438 22332438 A T RP11-69H14.6 RNA 0.05 TCGA-94-A5I6-01 15 25463843 25463843 C - SNORD115-27 5'Flank 0.20 TCGA-94-A5I6-01 15 60297309 60297309 C T FOXB1 Silent p.Y49Y 0.15 TCGA-94-A5I6-01 16 1306299 1306299 C A TPSD1 Silent p.P6P 0.10 TCGA-94-A5I6-01 16 1841074 1841074 G C IGFALS Missense_Mutation p.L487V 0.36 tolerated(0.09) probably_damaging(0.934) TCGA-94-A5I6-01 16 24105581 24105581 G T PRKCB Missense_Mutation p.G262W 0.14 deleterious(0.01) benign(0.412) TCGA-94-A5I6-01 16 24105582 24105582 G T PRKCB Missense_Mutation p.G262V 0.15 deleterious(0) possibly_damaging(0.549) TCGA-94-A5I6-01 16 2882266 2882266 G T ZG16B 3'UTR 0.39 TCGA-94-A5I6-01 16 31485024 31485024 G T TGFB1I1 Nonsense_Mutation p.G51* 0.27 TCGA-94-A5I6-01 16 65016044 65016044 C T CDH11 Missense_Mutation p.S387N 0.33 tolerated(0.33) benign(0.003) TCGA-94-A5I6-01 16 76572193 76572193 G T CNTNAP4 Missense_Mutation p.S986I 0.15 deleterious(0) possibly_damaging(0.756) TCGA-94-A5I6-01 16 85839495 85839495 G A COX4I1 Intron 0.12 TCGA-94-A5I6-01 16 85839496 85839496 G T COX4I1 Intron 0.12 TCGA-94-A5I6-01 17 10404747 10404747 G A MYH1 Missense_Mutation p.R1140C 0.34 deleterious(0.03) probably_damaging(1) TCGA-94-A5I6-01 17 11757669 11757669 G C DNAH9 Missense_Mutation p.R3286P 0.41 probably_damaging(0.994) TCGA-94-A5I6-01 17 3402299 3402299 G A ASPA Missense_Mutation p.A287T 0.08 deleterious(0) possibly_damaging(0.692) TCGA-94-A5I6-01 17 3595111 3595111 T C P2RX5 Intron 0.21 TCGA-94-A5I6-01 17 38487484 38487484 G A RARA Missense_Mutation p.S5N 0.37 tolerated_low_confidence(0.18) benign(0) TCGA-94-A5I6-01 17 42293048 42293048 A G UBTF Missense_Mutation p.Y150H 0.04 deleterious(0) probably_damaging(0.988) TCGA-94-A5I6-01 17 48277126 48277126 G C COL1A1 Missense_Mutation p.P96A 0.36 unknown(0) TCGA-94-A5I6-01 17 54559729 54559729 C T ANKFN1 Missense_Mutation p.R705C 0.40 deleterious(0) possibly_damaging(0.72) TCGA-94-A5I6-01 17 6978560 6978560 A T CLEC10A Intron 0.40 TCGA-94-A5I6-01 17 7579311 7579311 C T TP53 Splice_Site p.X125_splice 0.25 TCGA-94-A5I6-01 18 11851930 11851930 G T CHMP1B Silent p.T140T 0.07 TCGA-94-A5I6-01 18 31673461 31673461 T C NOL4 Missense_Mutation p.Q247R 0.34 tolerated(1) benign(0.075) TCGA-94-A5I6-01 18 3253408 3253408 G A MYL12A Missense_Mutation p.D55N 0.34 deleterious(0.03) benign(0.14) TCGA-94-A5I6-01 18 39550299 39550299 G T PIK3C3 Missense_Mutation p.R137L 0.08 deleterious(0) probably_damaging(0.971) TCGA-94-A5I6-01 18 63547702 63547702 A G CDH7 Missense_Mutation p.R644G 0.12 deleterious(0.01) possibly_damaging(0.842) TCGA-94-A5I6-01 19 12060940 12060940 G A ZNF700 Missense_Mutation p.E701K 0.12 tolerated(0.06) benign(0.086) TCGA-94-A5I6-01 19 12491524 12491524 G A CTD-3105H18.14 3'UTR 0.22 TCGA-94-A5I6-01 19 14028942 14028942 G T CC2D1A Missense_Mutation p.A270S 0.14 deleterious(0) possibly_damaging(0.786) TCGA-94-A5I6-01 19 17366219 17366219 C T USHBP1 Missense_Mutation p.S556N 0.22 tolerated(0.07) possibly_damaging(0.621) TCGA-94-A5I6-01 19 35510150 35510150 G T GRAMD1A Silent p.L423L 0.32 TCGA-94-A5I6-01 19 43093171 43093171 G T CEACAM8 Silent p.T241T 0.24 TCGA-94-A5I6-01 19 4538477 4538477 C A LRG1 Silent p.G173G 0.21 TCGA-94-A5I6-01 19 49342494 49342494 C T PLEKHA4 Silent p.Q644Q 0.13 TCGA-94-A5I6-01 19 50335252 50335252 G T MED25 Missense_Mutation p.Q430H 0.29 tolerated(0.1) benign(0.11) TCGA-94-A5I6-01 19 53994678 53994678 C A ZNF813 Missense_Mutation p.L398I 0.08 deleterious(0.04) possibly_damaging(0.774) TCGA-94-A5I6-01 19 55247455 55247455 C A KIR3DL3 Missense_Mutation p.D375E 0.44 tolerated(0.31) benign(0.033) TCGA-94-A5I6-01 19 55452905 55452905 C T NLRP7 Missense_Mutation p.V59I 0.27 tolerated(0.76) benign(0.002) TCGA-94-A5I6-01 19 58601598 58601598 T C ZSCAN18 Missense_Mutation p.S69G 0.08 tolerated(0.12) benign(0.003) TCGA-94-A5I6-01 19 6214005 6214005 G A MLLT1 Missense_Mutation p.S451F 0.36 tolerated(0.39) possibly_damaging(0.485) TCGA-94-A5I6-01 19 6591043 6591043 G C CD70 5'UTR 0.20 TCGA-94-A5I6-01 19 9060900 9060900 T A MUC16 Missense_Mutation p.K8849I 0.32 unknown(0) TCGA-94-A5I6-01 1 109271440 109271440 C G FNDC7 Missense_Mutation p.S519C 0.06 deleterious(0.01) probably_damaging(0.982) TCGA-94-A5I6-01 1 144909930 144909930 T C PDE4DIP Missense_Mutation p.K753R 0.16 deleterious(0.04) probably_damaging(0.911) TCGA-94-A5I6-01 1 152328676 152328676 G A FLG2 Missense_Mutation p.S529F 0.16 unknown(0) TCGA-94-A5I6-01 1 152552343 152552343 T G LCE3D Missense_Mutation p.K24Q 0.39 tolerated_low_confidence(0.15) unknown(0) TCGA-94-A5I6-01 1 154794567 154794567 G - KCNN3 Frame_Shift_Del p.Q343Sfs*4 0.11 TCGA-94-A5I6-01 1 155629882 155629882 G A YY1AP1 Missense_Mutation p.P745S 0.31 tolerated_low_confidence(0.07) benign(0.249) TCGA-94-A5I6-01 1 156552064 156552064 C A TTC24 Missense_Mutation p.Q250K 0.62 tolerated(0.38) benign(0.165) TCGA-94-A5I6-01 1 166991073 166991073 C A MAEL Missense_Mutation p.S429Y 0.30 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-94-A5I6-01 1 175362917 175362917 T G TNR Missense_Mutation p.K452T 0.14 tolerated(0.12) probably_damaging(0.969) TCGA-94-A5I6-01 1 21546351 21546351 G A ECE1 3'Flank 0.27 TCGA-94-A5I6-01 1 238053436 238053436 G T ZP4 Missense_Mutation p.D72E 0.46 tolerated(1) benign(0.001) TCGA-94-A5I6-01 1 238053861 238053861 T G ZP4 Silent p.A25A 0.12 TCGA-94-A5I6-01 1 238090739 238090739 A C RP11-193H5.1 RNA 0.32 TCGA-94-A5I6-01 1 247902368 247902368 G T OR14K1 Missense_Mutation p.G151V 0.12 tolerated(0.64) benign(0.124) TCGA-94-A5I6-01 1 248031347 248031347 C T TRIM58 Missense_Mutation p.L285F 0.47 deleterious(0.01) benign(0.01) TCGA-94-A5I6-01 1 25747146 25747146 G A RHCE Silent p.L44L 0.24 TCGA-94-A5I6-01 1 38197147 38197147 G A EPHA10 Silent p.S533S 0.30 TCGA-94-A5I6-01 1 44482871 44482871 C A SLC6A9 5'UTR 0.47 TCGA-94-A5I6-01 1 72163719 72163719 A T NEGR1 Missense_Mutation p.D213E 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-94-A5I6-01 1 92762992 92762992 A G GLMN Missense_Mutation p.L45P 0.06 deleterious(0) probably_damaging(0.989) TCGA-94-A5I6-01 20 3651926 3651926 C A ADAM33 Missense_Mutation p.G684C 0.28 deleterious(0) probably_damaging(1) TCGA-94-A5I6-01 20 42331254 42331254 G T MYBL2 Missense_Mutation p.R359L 0.22 tolerated(0.28) benign(0.002) TCGA-94-A5I6-01 20 43129901 43129901 G A SERINC3 Silent p.L366L 0.25 TCGA-94-A5I6-01 20 44839105 44839105 C T CDH22 Missense_Mutation p.R376H 0.09 deleterious(0.01) benign(0.024) TCGA-94-A5I6-01 21 11038847 11038847 C G BAGE2 RNA 0.03 TCGA-94-A5I6-01 21 19725255 19725255 C A TMPRSS15 Missense_Mutation p.G379V 0.26 deleterious(0) probably_damaging(1) TCGA-94-A5I6-01 21 37741647 37741647 G T MORC3 Missense_Mutation p.V661L 0.26 tolerated(0.38) benign(0.006) TCGA-94-A5I6-01 21 46058021 46058021 C T KRTAP10-10 Silent p.L229L 0.29 TCGA-94-A5I6-01 21 9907216 9907216 G T TEKT4P2 RNA 0.18 TCGA-94-A5I6-01 22 18367052 18367052 G T MICAL3 Intron 0.31 TCGA-94-A5I6-01 22 26400695 26400695 C A MYO18B Missense_Mutation p.S2115Y 0.23 deleterious(0) probably_damaging(0.996) TCGA-94-A5I6-01 22 26400696 26400696 C T MYO18B Silent p.S2115S 0.22 TCGA-94-A5I6-01 22 26422471 26422471 C T MYO18B Silent p.A2177A 0.21 TCGA-94-A5I6-01 22 36598091 36598091 G - APOL4 5'UTR 0.20 TCGA-94-A5I6-01 22 51215158 51215158 T C RABL2B Missense_Mutation p.T53A 0.32 deleterious(0) probably_damaging(1) TCGA-94-A5I6-01 22 51215160 51215160 G A RABL2B Missense_Mutation p.S52F 0.32 deleterious(0.02) possibly_damaging(0.487) TCGA-94-A5I6-01 2 102791122 102791122 A G IL1R1 Missense_Mutation p.Y356C 0.13 deleterious(0.04) benign(0.352) TCGA-94-A5I6-01 2 121107189 121107189 C T INHBB Silent p.I321I 0.04 TCGA-94-A5I6-01 2 176981550 176981550 T A HOXD10 5'UTR 0.42 TCGA-94-A5I6-01 2 178098810 178098810 C G NFE2L2 Missense_Mutation p.E79Q 0.47 deleterious(0) probably_damaging(1) TCGA-94-A5I6-01 2 179255859 179255859 G A OSBPL6 Silent p.G812G 0.44 TCGA-94-A5I6-01 2 179391718 179391718 A T TTN 3'UTR 0.33 TCGA-94-A5I6-01 2 179575461 179575461 T A TTN Missense_Mutation p.T9455S 0.45 TCGA-94-A5I6-01 2 179600759 179600759 G T TTN Missense_Mutation p.T4805K 0.35 TCGA-94-A5I6-01 2 179611767 179611767 A T TTN Intron 0.10 TCGA-94-A5I6-01 2 204571356 204571356 C - CD28 5'UTR 0.28 TCGA-94-A5I6-01 2 216191603 216191603 A G ATIC Missense_Mutation p.Y197C 0.46 deleterious(0) probably_damaging(0.995) TCGA-94-A5I6-01 2 220107552 220107552 C A GLB1L Missense_Mutation p.A110S 0.47 tolerated(0.59) benign(0.021) TCGA-94-A5I6-01 2 27301882 27301882 G A EMILIN1 5'UTR 0.15 TCGA-94-A5I6-01 2 33952769 33952769 G T AC009499.1 Intron 0.39 TCGA-94-A5I6-01 2 70933426 70933426 C T ADD2 Missense_Mutation p.A39T 0.48 deleterious(0.02) benign(0.11) TCGA-94-A5I6-01 2 77745596 77745596 G T LRRTM4 Silent p.R467R 0.27 TCGA-94-A5I6-01 2 80101274 80101274 C A CTNNA2 Missense_Mutation p.L220M 0.25 deleterious(0.04) probably_damaging(0.999) TCGA-94-A5I6-01 2 86406651 86406651 G A IMMT Missense_Mutation p.R72W 0.09 deleterious(0) probably_damaging(1) TCGA-94-A5I6-01 2 98166048 98166048 C A ANKRD36B Splice_Site 0.20 TCGA-94-A5I6-01 3 123337536 123337536 T C MYLK Missense_Mutation p.D1817G 0.05 deleterious(0) probably_damaging(0.999) TCGA-94-A5I6-01 3 125032193 125032193 C T ZNF148 Missense_Mutation p.E98K 0.43 tolerated(0.33) benign(0.014) TCGA-94-A5I6-01 3 137849995 137849995 G T A4GNT Missense_Mutation p.S35Y 0.58 tolerated(1) benign(0.091) TCGA-94-A5I6-01 3 167016122 167016122 T C ZBBX Missense_Mutation p.N617S 0.09 tolerated(1) benign(0.001) TCGA-94-A5I6-01 3 167277911 167277911 T C WDR49 Missense_Mutation p.M198V 0.05 deleterious(0) possibly_damaging(0.688) TCGA-94-A5I6-01 3 178947192 178947192 A T PIK3CA Silent p.T876T 0.25 TCGA-94-A5I6-01 3 179047506 179047506 T C ZNF639 Silent p.F53F 0.11 TCGA-94-A5I6-01 3 184612498 184612498 T A VPS8 Missense_Mutation p.L597I 0.32 tolerated(0.07) possibly_damaging(0.817) TCGA-94-A5I6-01 3 197430434 197430434 C G KIAA0226 Missense_Mutation p.Q185H 0.11 deleterious(0) probably_damaging(0.998) TCGA-94-A5I6-01 3 29781333 29781333 C T RBMS3 Silent p.D174D 0.16 TCGA-94-A5I6-01 3 52859998 52859998 C A ITIH4 Missense_Mutation p.Q221H 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-94-A5I6-01 3 69075243 69075243 G A TMF1 Silent p.R921R 0.33 TCGA-94-A5I6-01 3 78795964 78795964 C T ROBO1 Missense_Mutation p.G196S 0.12 deleterious(0) probably_damaging(1) TCGA-94-A5I6-01 3 97852276 97852276 C G OR5H1 Silent p.L245L 0.05 TCGA-94-A5I6-01 4 10446422 10446422 C T ZNF518B Missense_Mutation p.V511I 0.13 tolerated(0.4) benign(0.002) TCGA-94-A5I6-01 4 106861349 106861349 G T NPNT Missense_Mutation p.G238V 0.20 deleterious(0) probably_damaging(0.999) TCGA-94-A5I6-01 4 134073378 134073378 G T PCDH10 Missense_Mutation p.G695W 0.09 tolerated(0.16) probably_damaging(0.993) TCGA-94-A5I6-01 4 146475028 146475028 C G SMAD1 Missense_Mutation p.H364D 0.11 deleterious(0.01) possibly_damaging(0.793) TCGA-94-A5I6-01 4 155489642 155489642 T C FGB Silent p.N276N 0.27 TCGA-94-A5I6-01 4 156634511 156634511 A T GUCY1A3 Missense_Mutation p.T450S 0.12 deleterious(0.01) probably_damaging(0.966) TCGA-94-A5I6-01 4 187540047 187540047 A C FAT1 Missense_Mutation p.S2565A 0.25 benign(0.001) TCGA-94-A5I6-01 4 47584034 47584034 G T ATP10D Missense_Mutation p.A1236S 0.20 tolerated(0.36) benign(0.268) TCGA-94-A5I6-01 4 6066630 6066630 T - JAKMIP1 Frame_Shift_Del p.T470Rfs*22 0.10 TCGA-94-A5I6-01 4 66213915 66213915 T C EPHA5 Missense_Mutation p.K839E 0.19 deleterious(0) probably_damaging(0.923) TCGA-94-A5I6-01 4 74043227 74043227 C T ANKRD17 Silent p.Q139Q 0.21 TCGA-94-A5I6-01 4 89607888 89607888 A T HERC3 Missense_Mutation p.S837C 0.11 deleterious(0) probably_damaging(0.933) TCGA-94-A5I6-01 5 126869453 126869453 C T PRRC1 Missense_Mutation p.P299L 0.30 tolerated(0.06) probably_damaging(0.942) TCGA-94-A5I6-01 5 130766841 130766841 T A RAPGEF6 Missense_Mutation p.R1400S 0.29 tolerated_low_confidence(0.21) benign(0.437) TCGA-94-A5I6-01 5 140187858 140187858 C T PCDHA4 Silent p.D362D 0.14 TCGA-94-A5I6-01 5 140474266 140474266 C A PCDHB2 5'UTR 0.29 TCGA-94-A5I6-01 5 140517048 140517048 G T PCDHB5 Missense_Mutation p.A678S 0.14 tolerated_low_confidence(0.24) benign(0.012) TCGA-94-A5I6-01 5 140580356 140580356 G A PCDHB11 Missense_Mutation p.V337M 0.23 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-94-A5I6-01 5 140605087 140605087 C T PCDHB14 Silent p.Y670Y 0.13 TCGA-94-A5I6-01 5 140788865 140788865 G T PCDHGB6 Missense_Mutation p.V366F 0.30 deleterious(0.01) benign(0.208) TCGA-94-A5I6-01 5 140903715 140903715 C A DIAPH1 Missense_Mutation p.R1219L 0.11 probably_damaging(0.989) TCGA-94-A5I6-01 5 143560 143560 G A PLEKHG4B Missense_Mutation p.E229K 0.43 tolerated(0.15) benign(0.036) TCGA-94-A5I6-01 5 143853570 143853570 G T KCTD16 Nonsense_Mutation p.E394* 0.26 TCGA-94-A5I6-01 5 149584410 149584410 G T SLC6A7 Missense_Mutation p.D485Y 0.27 deleterious(0) probably_damaging(0.998) TCGA-94-A5I6-01 5 150885391 150885391 C A FAT2 Missense_Mutation p.R4262L 0.25 benign(0.001) TCGA-94-A5I6-01 5 156514298 156514298 A G HAVCR2 Missense_Mutation p.S241P 0.26 tolerated(0.1) benign(0.003) TCGA-94-A5I6-01 5 168123414 168123414 C G SLIT3 Missense_Mutation p.E989Q 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-94-A5I6-01 5 170236760 170236772 GTAAGAGTCTTGA - GABRP Splice_Site p.X340_splice 0.10 TCGA-94-A5I6-01 5 179044870 179044870 T C HNRNPH1 Missense_Mutation p.Q284R 0.16 deleterious(0.05) probably_damaging(0.932) TCGA-94-A5I6-01 5 24498607 24498607 C T CDH10 Missense_Mutation p.R472H 0.13 tolerated(0.46) probably_damaging(0.994) TCGA-94-A5I6-01 5 38960075 38960075 C T RICTOR Silent p.G619G 0.39 TCGA-94-A5I6-01 5 76506843 76506843 C G PDE8B Missense_Mutation p.S31R 0.30 tolerated_low_confidence(0.37) benign(0.313) TCGA-94-A5I6-01 5 79029636 79029636 A G CMYA5 Missense_Mutation p.E1683G 0.27 benign(0.108) TCGA-94-A5I6-01 5 80716328 80716328 C T SSBP2 Missense_Mutation p.V361M 0.11 deleterious_low_confidence(0) benign(0.223) TCGA-94-A5I6-01 6 108225899 108225899 G A SEC63 Missense_Mutation p.P330S 0.31 deleterious(0.02) possibly_damaging(0.661) TCGA-94-A5I6-01 6 110300380 110300380 C A GPR6 Missense_Mutation p.A22E 0.22 tolerated_low_confidence(0.34) benign(0) TCGA-94-A5I6-01 6 131927766 131927766 T A MED23 Splice_Site p.X408_splice 0.17 TCGA-94-A5I6-01 6 132032047 132032047 A G CTAGE9 Silent p.Y37Y 0.27 TCGA-94-A5I6-01 6 147685194 147685194 G C STXBP5 Silent p.R991R 0.31 TCGA-94-A5I6-01 6 152749427 152749427 G T SYNE1 Missense_Mutation p.A1630E 0.15 benign(0.013) TCGA-94-A5I6-01 6 155154132 155154132 G C SCAF8 Missense_Mutation p.G1140A 0.36 tolerated_low_confidence(0.11) probably_damaging(0.999) TCGA-94-A5I6-01 6 24145846 24145846 C A NRSN1 Missense_Mutation p.P87H 0.27 deleterious(0) probably_damaging(0.971) TCGA-94-A5I6-01 6 36044386 36044386 G A MAPK14 Splice_Site p.X228_splice 0.18 TCGA-94-A5I6-01 6 41010854 41010870 AAAGTCTTATTGCTTGT - TSPO2 Frame_Shift_Del p.K44Tfs*121 0.10 TCGA-94-A5I6-01 6 49976982 49976982 T C DEFB110 Missense_Mutation p.R20G 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.895) TCGA-94-A5I6-01 6 57472417 57472417 G C PRIM2 3'UTR 0.12 TCGA-94-A5I6-01 6 90661394 90661394 C T BACH2 Missense_Mutation p.R144Q 0.30 tolerated(0.38) benign(0.124) TCGA-94-A5I6-01 7 124404545 124404545 G A GPR37 Silent p.S162S 0.07 TCGA-94-A5I6-01 7 127014662 127014662 C A ZNF800 Missense_Mutation p.R243L 0.26 deleterious(0.03) probably_damaging(0.995) TCGA-94-A5I6-01 7 128490527 128490527 G A FLNC Silent p.G1796G 0.12 TCGA-94-A5I6-01 7 142832320 142832320 C A PIP Silent p.P43P 0.13 TCGA-94-A5I6-01 7 149500855 149500855 G T SSPO RNA 0.28 TCGA-94-A5I6-01 7 154667790 154667790 G C DPP6 Missense_Mutation p.K686N 0.20 deleterious(0.01) possibly_damaging(0.519) TCGA-94-A5I6-01 7 50800055 50800055 C G GRB10 5'Flank 0.23 TCGA-94-A5I6-01 7 75617038 75617038 A T POR 3'Flank 0.13 TCGA-94-A5I6-01 7 82580399 82580399 T A PCLO Missense_Mutation p.T3169S 0.29 unknown(0) TCGA-94-A5I6-01 7 99798870 99798870 C A GATS 3'UTR 0.23 TCGA-94-A5I6-01 8 110509412 110509412 C A PKHD1L1 Missense_Mutation p.L3504M 0.24 deleterious(0.03) probably_damaging(0.995) TCGA-94-A5I6-01 8 144297338 144297338 C A GPIHBP1 Missense_Mutation p.A167D 0.28 deleterious(0.02) benign(0.184) TCGA-94-A5I6-01 8 144991304 144991304 T C PLEC Missense_Mutation p.I4366V 0.29 probably_damaging(0.992) TCGA-94-A5I6-01 8 145639233 145639233 G A SLC39A4 Silent p.S440S 0.15 TCGA-94-A5I6-01 8 18257932 18257932 G C NAT2 Missense_Mutation p.G140A 0.20 deleterious(0) probably_damaging(0.917) TCGA-94-A5I6-01 8 1828261 1828261 G C ARHGEF10 Missense_Mutation p.M297I 0.29 tolerated(0.2) benign(0.192) TCGA-94-A5I6-01 8 19363094 19363094 C T CSGALNACT1 Silent p.E84E 0.24 TCGA-94-A5I6-01 8 54682275 54682275 T G ATP6V1H Missense_Mutation p.K360Q 0.28 deleterious(0.01) probably_damaging(0.975) TCGA-94-A5I6-01 8 68188245 68188245 T C ARFGEF1 Missense_Mutation p.M435V 0.12 tolerated(0.07) possibly_damaging(0.887) TCGA-94-A5I6-01 8 69020524 69020524 A T PREX2 Nonsense_Mutation p.K966* 0.19 TCGA-94-A5I6-01 8 89128770 89128770 A G MMP16 Missense_Mutation p.L350P 0.25 deleterious(0.02) probably_damaging(0.992) TCGA-94-A5I6-01 8 92983014 92983014 C G RUNX1T1 Missense_Mutation p.A482P 0.30 deleterious(0) probably_damaging(0.993) TCGA-94-A5I6-01 9 135073773 135073773 C T NTNG2 Missense_Mutation p.R212C 0.07 deleterious(0) probably_damaging(0.965) TCGA-94-A5I6-01 9 139908735 139908735 C A ABCA2 Silent p.S1375S 0.48 TCGA-94-A5I6-01 9 21971116 21971116 G A CDKN2A Missense_Mutation p.P81L 0.36 deleterious(0) probably_damaging(0.981) TCGA-94-A5I6-01 9 36087795 36087795 G A RECK Missense_Mutation p.E248K 0.59 tolerated(0.33) possibly_damaging(0.565) TCGA-94-A5I6-01 9 5126861 5126861 G T JAK2 3'UTR 0.33 TCGA-94-A5I6-01 9 99525406 99525406 G A ZNF510 Missense_Mutation p.H116Y 0.34 tolerated(1) benign(0.001) TCGA-94-A5I6-01 X 101092546 101092546 C T NXF5 Missense_Mutation p.D334N 0.59 deleterious(0.02) benign(0.323) TCGA-94-A5I6-01 X 102192598 102192598 G C RAB40AL Missense_Mutation p.G118R 0.40 deleterious(0) probably_damaging(1) TCGA-94-A5I6-01 X 108673622 108673622 C A GUCY2F Missense_Mutation p.D569Y 0.55 deleterious(0) possibly_damaging(0.498) TCGA-94-A5I6-01 X 128894516 128894516 A G XPNPEP2 Missense_Mutation p.N486S 0.49 tolerated(0.12) benign(0.349) TCGA-94-A5I6-01 X 20148634 20148634 G A EIF1AX Silent p.D143D 0.36 TCGA-94-A5I6-01 X 21670566 21670566 G T CNKSR2 Missense_Mutation p.S1011I 0.36 deleterious(0.03) benign(0.027) TCGA-94-A5I6-01 Y 3448031 3448031 C A TGIF2LY 3'UTR 0.49 TCGA-96-7544-01 10 101841245 101841245 C A CPN1 Silent p.T46T 0.32 TCGA-96-7544-01 10 103921366 103921366 C T NOLC1 Nonsense_Mutation p.Q599* 0.35 TCGA-96-7544-01 10 105110844 105110844 G T PCGF6 5'UTR 0.14 TCGA-96-7544-01 10 117061448 117061448 G T ATRNL1 Nonsense_Mutation p.E905* 0.22 TCGA-96-7544-01 10 1230802 1230802 C G ADARB2 Missense_Mutation p.R681T 0.16 deleterious(0.01) benign(0.428) TCGA-96-7544-01 10 124380842 124380842 G A DMBT1 Missense_Mutation p.G1723S 0.31 deleterious(0.01) probably_damaging(0.989) TCGA-96-7544-01 10 127697839 127697839 G T FANK1 Intron 0.18 TCGA-96-7544-01 10 134912150 134912150 C A GPR123 Silent p.I46I 0.30 TCGA-96-7544-01 10 15649813 15649813 G A ITGA8 Nonsense_Mutation p.Q543* 0.34 TCGA-96-7544-01 10 18289701 18289701 C A SLC39A12 Nonsense_Mutation p.S569* 0.26 TCGA-96-7544-01 10 26463063 26463063 C G MYO3A Missense_Mutation p.S1290R 0.18 tolerated_low_confidence(0.08) benign(0.104) TCGA-96-7544-01 10 26505729 26505729 T G GAD2 5'UTR 0.20 TCGA-96-7544-01 10 27539515 27539515 G T RP11-85G18.6 RNA 0.30 TCGA-96-7544-01 10 31134460 31134460 C A ZNF438 Missense_Mutation p.Q639H 0.19 tolerated(0.11) benign(0.21) TCGA-96-7544-01 10 51480516 51480516 T G AGAP7 Silent p.R102R 0.29 TCGA-96-7544-01 10 52834518 52834518 C A PRKG1 Silent p.A56A 0.19 TCGA-96-7544-01 10 55568507 55568507 G TT PCDH15 Frame_Shift_Ins p.A702Efs*12 0.16 TCGA-96-7544-01 10 70513700 70513700 G A CCAR1 Missense_Mutation p.A404T 0.26 tolerated(0.21) possibly_damaging(0.584) TCGA-96-7544-01 10 8007473 8007473 G T TAF3 Missense_Mutation p.S667I 0.20 deleterious_low_confidence(0) benign(0.22) TCGA-96-7544-01 10 84498358 84498358 C T NRG3 Missense_Mutation p.R327C 0.27 deleterious(0) probably_damaging(0.984) TCGA-96-7544-01 10 93617221 93617221 A T TNKS2 Missense_Mutation p.T1010S 0.19 tolerated(0.49) benign(0.007) TCGA-96-7544-01 10 95097637 95097637 A G MYOF Missense_Mutation p.Y1458H 0.18 deleterious(0) probably_damaging(0.968) TCGA-96-7544-01 10 97779326 97779326 C T CC2D2B Intron 0.25 TCGA-96-7544-01 10 98469464 98469464 C A PIK3AP1 Missense_Mutation p.R97L 0.27 deleterious(0) possibly_damaging(0.619) TCGA-96-7544-01 10 98766394 98766394 C G SLIT1 Missense_Mutation p.C1142S 0.22 deleterious(0.01) probably_damaging(0.996) TCGA-96-7544-01 11 102195990 102195990 G C BIRC3 Silent p.L250L 0.19 TCGA-96-7544-01 11 114401290 114401290 G C NXPE1 Missense_Mutation p.A5G 0.58 tolerated(0.12) benign(0.049) TCGA-96-7544-01 11 114568961 114568962 CA - NXPE2 Frame_Shift_Del p.H111Qfs*58 0.43 TCGA-96-7544-01 11 1219144 1219144 G T MUC5AC RNA 0.42 TCGA-96-7544-01 11 1255468 1255468 G T MUC5B Missense_Mutation p.S804I 0.54 unknown(0) TCGA-96-7544-01 11 134182343 134182343 C T GLB1L3 Missense_Mutation p.S463F 0.15 deleterious(0.02) benign(0.031) TCGA-96-7544-01 11 22284550 22284550 G A ANO5 Missense_Mutation p.G620E 0.34 deleterious(0.01) probably_damaging(0.943) TCGA-96-7544-01 11 27390464 27390464 C A LGR4 Missense_Mutation p.W602C 0.35 deleterious(0) probably_damaging(0.976) TCGA-96-7544-01 11 28104498 28104498 T C KIF18A Silent p.E389E 0.50 TCGA-96-7544-01 11 33780102 33780102 C G FBXO3 Missense_Mutation p.G135A 0.33 deleterious(0.01) benign(0.075) TCGA-96-7544-01 11 47178701 47178701 G C C11orf49 Silent p.T193T 0.28 TCGA-96-7544-01 11 47830055 47830055 A G NUP160 Silent p.F756F 0.26 TCGA-96-7544-01 11 5246841 5246841 T C HBB Missense_Mutation p.H144R 0.36 tolerated(0.86) benign(0.004) TCGA-96-7544-01 11 55432722 55432722 C A OR4C6 Missense_Mutation p.A27D 0.26 deleterious_low_confidence(0) possibly_damaging(0.475) TCGA-96-7544-01 11 55563448 55563448 A T OR5D14 Silent p.S139S 0.14 TCGA-96-7544-01 11 55653524 55653524 G C TRIM51 Intron 0.38 TCGA-96-7544-01 11 57970861 57970861 A G OR1S2 Missense_Mutation p.Y265H 0.29 deleterious(0.01) probably_damaging(1) TCGA-96-7544-01 11 58170022 58170022 G C OR5B3 Silent p.V287V 0.26 TCGA-96-7544-01 11 58978752 58978752 G T MPEG1 Silent p.G529G 0.25 TCGA-96-7544-01 11 60292722 60292722 A G MS4A13 Missense_Mutation p.T77A 0.17 tolerated(1) benign(0.005) TCGA-96-7544-01 11 62289700 62289700 C A AHNAK Silent p.V4063V 0.20 TCGA-96-7544-01 11 62293716 62293716 C A AHNAK Missense_Mutation p.V2725L 0.19 benign(0.017) TCGA-96-7544-01 11 64124604 64124604 C T CCDC88B 3'UTR 0.25 TCGA-96-7544-01 11 64812113 64812113 A T SAC3D1 Missense_Mutation p.S331C 0.32 deleterious(0.05) possibly_damaging(0.903) TCGA-96-7544-01 11 65365997 65365997 G A MAP3K11 Missense_Mutation p.S770L 0.32 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-96-7544-01 11 66813294 66813294 C T SYT12 Silent p.P346P 0.29 TCGA-96-7544-01 11 71169481 71169481 G T NADSYN1 Nonsense_Mutation p.G52* 0.22 TCGA-96-7544-01 11 73753101 73753101 G C C2CD3 Silent p.L1886L 0.14 TCGA-96-7544-01 11 89531537 89531537 T G TRIM49 Missense_Mutation p.K374Q 0.23 tolerated(0.14) benign(0.007) TCGA-96-7544-01 11 9161183 9161183 C G DENND5A 3'UTR 0.27 TCGA-96-7544-01 11 92087439 92087439 C T FAT3 Nonsense_Mutation p.Q721* 0.15 TCGA-96-7544-01 12 100790195 100790195 G T SLC17A8 Missense_Mutation p.G226C 0.22 deleterious(0) probably_damaging(1) TCGA-96-7544-01 12 100790196 100790196 G T SLC17A8 Splice_Site p.X226_splice 0.23 TCGA-96-7544-01 12 104042499 104042499 G T STAB2 Missense_Mutation p.G358C 0.24 deleterious(0) probably_damaging(0.999) TCGA-96-7544-01 12 10958653 10958653 T A TAS2R8 Silent p.I309I 0.45 TCGA-96-7544-01 12 110957625 110957625 T C RAD9B Missense_Mutation p.M265T 0.18 tolerated(0.16) possibly_damaging(0.72) TCGA-96-7544-01 12 111779753 111779753 G T CUX2 Missense_Mutation p.K1185N 0.25 deleterious(0) possibly_damaging(0.598) TCGA-96-7544-01 12 118693313 118693313 A T TAOK3 Silent p.P20P 0.29 TCGA-96-7544-01 12 120591019 120591019 G A GCN1L1 Nonsense_Mutation p.Q1354* 0.26 TCGA-96-7544-01 12 130184842 130184842 C T TMEM132D Missense_Mutation p.A161T 0.27 tolerated(0.32) benign(0.008) TCGA-96-7544-01 12 130884335 130884335 G T RIMBP2 Silent p.G1007G 0.20 TCGA-96-7544-01 12 132334593 132334593 G T MMP17 Missense_Mutation p.R484L 0.33 tolerated(0.33) possibly_damaging(0.657) TCGA-96-7544-01 12 14993687 14993687 C A ART4 Missense_Mutation p.C182F 0.17 deleterious(0) probably_damaging(0.999) TCGA-96-7544-01 12 16713458 16713458 G C LMO3 Missense_Mutation p.T96R 0.19 deleterious(0.02) possibly_damaging(0.468) TCGA-96-7544-01 12 21448636 21448636 T A SLCO1A2 Missense_Mutation p.H389L 0.40 tolerated(0.09) benign(0.209) TCGA-96-7544-01 12 26755423 26755423 C A ITPR2 Missense_Mutation p.L1186F 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-96-7544-01 12 27845838 27845838 A T PPFIBP1 3'UTR 0.33 TCGA-96-7544-01 12 29460715 29460715 A T FAR2 Missense_Mutation p.I224F 0.36 deleterious(0) benign(0.424) TCGA-96-7544-01 12 31247738 31247738 C T DDX11 Silent p.D488D 0.24 TCGA-96-7544-01 12 32520635 32520635 A T BICD1 Silent p.P932P 0.35 TCGA-96-7544-01 12 40689425 40689425 C A LRRK2 Missense_Mutation p.S1025R 0.19 tolerated(0.4) benign(0.012) TCGA-96-7544-01 12 4614494 4614494 C A C12orf4 Missense_Mutation p.R405S 0.15 tolerated(0.34) benign(0.038) TCGA-96-7544-01 12 4614495 4614495 C A C12orf4 Missense_Mutation p.R405M 0.16 tolerated(0.09) possibly_damaging(0.696) TCGA-96-7544-01 12 49435306 49435306 G A KMT2D Nonsense_Mutation p.Q2083* 0.25 TCGA-96-7544-01 12 49992681 49992681 A G FAM186B Missense_Mutation p.Y741H 0.20 tolerated(0.12) benign(0.022) TCGA-96-7544-01 12 52912850 52912850 G T KRT5 Missense_Mutation p.P217Q 0.12 deleterious(0.01) possibly_damaging(0.77) TCGA-96-7544-01 12 53004586 53004586 C A KRT73 Nonsense_Mutation p.E382* 0.21 TCGA-96-7544-01 12 55795161 55795161 G C OR6C65 Missense_Mutation p.L283F 0.12 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-96-7544-01 12 56398206 56398206 G C SUOX Missense_Mutation p.E345Q 0.19 deleterious(0.02) benign(0.217) TCGA-96-7544-01 12 57595605 57595605 C T LRP1 Missense_Mutation p.S3504L 0.26 possibly_damaging(0.754) TCGA-96-7544-01 12 6472620 6472620 C G SCNN1A Missense_Mutation p.G284R 0.19 deleterious(0.02) possibly_damaging(0.753) TCGA-96-7544-01 12 72863539 72863539 T G TRHDE Missense_Mutation p.D394E 0.32 deleterious(0) possibly_damaging(0.845) TCGA-96-7544-01 12 7362349 7362349 C T PEX5 Missense_Mutation p.A559V 0.27 deleterious(0) probably_damaging(0.989) TCGA-96-7544-01 12 7868019 7868019 G T DPPA3 Missense_Mutation p.R108L 0.11 tolerated(0.37) benign(0.164) TCGA-96-7544-01 12 8374833 8374833 G T FAM90A1 Missense_Mutation p.A327D 0.21 deleterious(0.03) benign(0.343) TCGA-96-7544-01 12 91348368 91348368 G C CCER1 Missense_Mutation p.P51R 0.17 tolerated(1) benign(0.004) TCGA-96-7544-01 12 92816413 92816413 C A CLLU1OS Splice_Site p.X18_splice 0.31 TCGA-96-7544-01 12 99837554 99837554 C G ANKS1B Missense_Mutation p.G491A 0.21 tolerated(0.33) benign(0.404) TCGA-96-7544-01 13 109445948 109445948 G T MYO16 Missense_Mutation p.G212V 0.51 deleterious(0) probably_damaging(1) TCGA-96-7544-01 13 32913639 32913639 A G BRCA2 Missense_Mutation p.Y1716C 0.36 tolerated(0.19) benign(0.003) TCGA-96-7544-01 13 33635845 33635845 G A KL Missense_Mutation p.D877N 0.39 deleterious(0) probably_damaging(0.935) TCGA-96-7544-01 13 51957840 51957840 C A INTS6 Missense_Mutation p.C311F 0.46 deleterious(0) probably_damaging(0.996) TCGA-96-7544-01 13 61987429 61987429 C T PCDH20 Missense_Mutation p.R268H 0.07 deleterious(0.05) probably_damaging(0.946) TCGA-96-7544-01 14 102466434 102466434 G C DYNC1H1 Missense_Mutation p.E1305Q 0.32 probably_damaging(0.944) TCGA-96-7544-01 14 104471720 104471720 G T TDRD9 Missense_Mutation p.R564L 0.28 deleterious(0) probably_damaging(0.995) TCGA-96-7544-01 14 106109988 106109988 G T IGHG2 Silent p.P210P 0.22 TCGA-96-7544-01 14 107034766 107034766 A C IGHV5-51 Missense_Mutation p.L105R 0.19 deleterious(0.01) probably_damaging(0.976) TCGA-96-7544-01 14 19553713 19553713 C A POTEG Silent p.G99G 0.06 TCGA-96-7544-01 14 20389167 20389167 C T OR4K5 Silent p.V134V 0.26 TCGA-96-7544-01 14 20858853 20858853 C T TEP1 Missense_Mutation p.G774D 0.28 deleterious(0.03) benign(0.048) TCGA-96-7544-01 14 21360324 21360324 T C RNASE3 Missense_Mutation p.I160T 0.18 deleterious(0.01) possibly_damaging(0.651) TCGA-96-7544-01 14 44973983 44973983 A G FSCB Silent p.A736A 0.27 TCGA-96-7544-01 14 52782106 52782106 C G PTGER2 Missense_Mutation p.F280L 0.16 tolerated(1) benign(0.019) TCGA-96-7544-01 14 57268919 57268919 G T OTX2 Missense_Mutation p.S143Y 0.31 tolerated(1) benign(0.181) TCGA-96-7544-01 14 58030930 58030930 C G SLC35F4 Missense_Mutation p.D497H 0.38 tolerated(0.06) possibly_damaging(0.728) TCGA-96-7544-01 14 65041240 65041240 G A PPP1R36 Missense_Mutation p.A201T 0.35 deleterious(0) possibly_damaging(0.818) TCGA-96-7544-01 14 68292269 68292269 G A RAD51B Missense_Mutation p.R58K 0.32 tolerated(0.78) benign(0.004) TCGA-96-7544-01 14 74411141 74411141 C G FAM161B Missense_Mutation p.Q337H 0.31 deleterious(0.03) benign(0.046) TCGA-96-7544-01 14 76091018 76091018 C G FLVCR2 Missense_Mutation p.S292C 0.24 deleterious(0.01) benign(0.021) TCGA-96-7544-01 14 77734911 77734911 A T NGB Missense_Mutation p.D73E 0.26 tolerated(0.13) probably_damaging(0.982) TCGA-96-7544-01 15 102358713 102358713 G T OR4F15 Silent p.G108G 0.24 TCGA-96-7544-01 15 20644848 20644848 T A HERC2P3 RNA 0.16 TCGA-96-7544-01 15 24924132 24924132 C A NPAP1 Missense_Mutation p.Q1040K 0.30 tolerated_low_confidence(0.2) benign(0.44) TCGA-96-7544-01 15 25304719 25304719 T C SNORD116-3 3'Flank 0.25 TCGA-96-7544-01 15 25456885 25456885 G C SNORD115-22 3'Flank 0.17 TCGA-96-7544-01 15 40308872 40308872 A G EIF2AK4 Missense_Mutation p.Q1310R 0.19 tolerated(0.12) benign(0.033) TCGA-96-7544-01 15 41120852 41120852 C A PPP1R14D 5'UTR 0.15 TCGA-96-7544-01 15 45436244 45436244 G A DUOX1 Nonsense_Mutation p.W649* 0.05 TCGA-96-7544-01 15 65988753 65988753 G C DENND4A Silent p.L1010L 0.17 TCGA-96-7544-01 15 74536362 74536362 C T CCDC33 Nonsense_Mutation p.Q20* 0.21 TCGA-96-7544-01 15 77906904 77906904 C T LINGO1 Missense_Mutation p.D449N 0.22 deleterious(0) possibly_damaging(0.832) TCGA-96-7544-01 15 89056288 89056288 C T DET1 Missense_Mutation p.R527H 0.17 deleterious(0) possibly_damaging(0.8) TCGA-96-7544-01 16 10032253 10032253 T A GRIN2A Silent p.T190T 0.36 TCGA-96-7544-01 16 20335527 20335527 C A GP2 Missense_Mutation p.G49V 0.44 tolerated(1) benign(0.015) TCGA-96-7544-01 16 31540028 31540028 C A AHSP 3'UTR 0.38 TCGA-96-7544-01 16 70866783 70866783 C T HYDIN Missense_Mutation p.G4623R 0.26 probably_damaging(0.991) TCGA-96-7544-01 16 737039 737039 C G WDR24 Missense_Mutation p.G346A 0.44 tolerated(0.13) benign(0.23) TCGA-96-7544-01 16 81076859 81076859 C A ATMIN Silent p.I252I 0.25 TCGA-96-7544-01 16 82182407 82182407 A C MPHOSPH6 Missense_Mutation p.Y138D 0.30 tolerated(0.26) benign(0.002) TCGA-96-7544-01 16 87744982 87744982 C A KLHDC4 Silent p.V301V 0.36 TCGA-96-7544-01 16 89337369 89337369 G A AC137932.1 3'UTR 0.19 TCGA-96-7544-01 17 18638735 18638735 G A TRIM16L Missense_Mutation p.E337K 0.33 tolerated(0.31) benign(0.001) TCGA-96-7544-01 17 37687182 37687182 G C CDK12 Missense_Mutation p.L1362F 0.15 probably_damaging(0.994) TCGA-96-7544-01 17 48470195 48470195 G A LRRC59 Silent p.L77L 0.18 TCGA-96-7544-01 17 5462755 5462755 C T NLRP1 Missense_Mutation p.E421K 0.12 tolerated(0.23) benign(0.123) TCGA-96-7544-01 17 56385241 56385241 C G BZRAP1 Missense_Mutation p.R1598T 0.14 deleterious(0.03) benign(0.14) TCGA-96-7544-01 17 59560870 59560870 A C TBX4 Missense_Mutation p.D544A 0.60 deleterious_low_confidence(0) benign(0.251) TCGA-96-7544-01 17 60663535 60663535 A G TLK2 Missense_Mutation p.I470V 0.67 tolerated(0.25) benign(0.163) TCGA-96-7544-01 17 62228288 62228288 C G TEX2 Silent p.L1065L 0.12 TCGA-96-7544-01 17 65899958 65899958 A G BPTF Missense_Mutation p.K866R 0.10 benign(0.063) TCGA-96-7544-01 17 71381993 71381993 C T SDK2 Missense_Mutation p.R1521Q 0.39 tolerated(1) possibly_damaging(0.668) TCGA-96-7544-01 17 72859219 72859219 G A FDXR Nonsense_Mutation p.Q485* 0.18 TCGA-96-7544-01 17 73279549 73279549 G A SLC25A19 Silent p.P138P 0.09 TCGA-96-7544-01 17 74005250 74005250 C T EVPL Missense_Mutation p.A1346T 0.64 tolerated(0.35) benign(0.014) TCGA-96-7544-01 17 7578457 7578457 C A TP53 Missense_Mutation p.R158L 0.44 deleterious(0) probably_damaging(0.986) TCGA-96-7544-01 17 8197889 8197889 G C SLC25A35 Missense_Mutation p.I79M 0.33 tolerated(0.05) probably_damaging(0.986) TCGA-96-7544-01 17 9808484 9808484 T C RCVRN Missense_Mutation p.K5R 0.40 tolerated(0.2) benign(0.001) TCGA-96-7544-01 18 23772309 23772309 A G PSMA8 Silent p.L235L 0.21 TCGA-96-7544-01 18 31325629 31325629 G C ASXL3 Missense_Mutation p.R1939S 0.27 benign(0.092) TCGA-96-7544-01 18 47801352 47801352 C T MBD1 Missense_Mutation p.E325K 0.42 tolerated(0.17) possibly_damaging(0.706) TCGA-96-7544-01 18 50278463 50278463 C A DCC Nonsense_Mutation p.S44* 0.35 TCGA-96-7544-01 18 580932 580932 G C CETN1 3'UTR 0.24 TCGA-96-7544-01 18 65179768 65179768 C A DSEL Missense_Mutation p.R703I 0.32 deleterious(0.02) possibly_damaging(0.581) TCGA-96-7544-01 18 6993682 6993682 C A LAMA1 Missense_Mutation p.D1656Y 0.28 deleterious(0) possibly_damaging(0.707) TCGA-96-7544-01 18 70205318 70205318 C A CBLN2 3'UTR 0.21 TCGA-96-7544-01 18 77470365 77470365 G - CTDP1 Frame_Shift_Del p.K265Sfs*50 0.12 TCGA-96-7544-01 19 10222357 10222357 G T P2RY11 5'UTR 0.28 TCGA-96-7544-01 19 17534552 17534552 C G MVB12A Missense_Mutation p.S195C 0.09 tolerated(0.08) probably_damaging(0.968) TCGA-96-7544-01 19 21588632 21588632 G T ZNF493 Missense_Mutation p.G76V 0.28 deleterious(0.02) benign(0.001) TCGA-96-7544-01 19 2339883 2339883 C T SPPL2B RNA 0.38 TCGA-96-7544-01 19 33355020 33355020 G C SLC7A9 Missense_Mutation p.L154V 0.07 tolerated(1) possibly_damaging(0.836) TCGA-96-7544-01 19 35657252 35657252 A G FXYD5 Intron 0.22 TCGA-96-7544-01 19 36339175 36339175 G T NPHS1 Nonsense_Mutation p.S432* 0.24 TCGA-96-7544-01 19 36349620 36349620 C A KIRREL2 Missense_Mutation p.P126T 0.22 tolerated(0.07) probably_damaging(0.979) TCGA-96-7544-01 19 37130418 37130418 C G ZNF461 Missense_Mutation p.E277Q 0.11 deleterious(0.03) possibly_damaging(0.769) TCGA-96-7544-01 19 43243182 43243182 G C PSG3 Missense_Mutation p.P42A 0.26 deleterious(0) probably_damaging(0.999) TCGA-96-7544-01 19 44933246 44933246 T A ZNF229 Missense_Mutation p.K570N 0.33 deleterious(0) probably_damaging(0.999) TCGA-96-7544-01 19 45029188 45029188 C A CEACAM20 RNA 0.27 TCGA-96-7544-01 19 45853650 45853650 A G KLC3 Missense_Mutation p.K399E 0.26 tolerated(0.09) possibly_damaging(0.676) TCGA-96-7544-01 19 45868136 45868136 C A ERCC2 Missense_Mutation p.R185L 0.20 tolerated(0.12) benign(0.009) TCGA-96-7544-01 19 51645885 51645885 G A SIGLEC7 Missense_Mutation p.V87M 0.36 deleterious(0) probably_damaging(0.989) TCGA-96-7544-01 19 54646634 54646634 G C CNOT3 5'UTR 0.23 TCGA-96-7544-01 19 55148328 55148328 A G LILRB1 Nonstop_Mutation p.*653Wext*52 0.18 TCGA-96-7544-01 19 55221612 55221612 A G AC098784.2 3'Flank 0.18 TCGA-96-7544-01 19 55221891 55221891 C G AC098784.2 3'Flank 0.12 TCGA-96-7544-01 19 55652252 55652252 G A TNNT1 Missense_Mutation p.A129V 0.19 deleterious(0.04) benign(0.376) TCGA-96-7544-01 19 56329418 56329418 C A NLRP11 Missense_Mutation p.Q41H 0.19 tolerated(0.12) possibly_damaging(0.77) TCGA-96-7544-01 19 56539817 56539817 G T NLRP5 Missense_Mutation p.V740F 0.20 deleterious(0.02) benign(0.388) TCGA-96-7544-01 19 57175100 57175100 G C ZNF835 Silent p.L489L 0.36 TCGA-96-7544-01 19 57803142 57803142 C T ZNF460 Silent p.F411F 0.24 TCGA-96-7544-01 19 57803332 57803332 C T ZNF460 Missense_Mutation p.P475S 0.14 deleterious(0) probably_damaging(1) TCGA-96-7544-01 19 58004353 58004353 G T ZNF419 Missense_Mutation p.R144M 0.52 deleterious(0) possibly_damaging(0.459) TCGA-96-7544-01 19 58005155 58005155 G C ZNF419 Missense_Mutation p.E411D 0.19 deleterious(0.04) benign(0.252) TCGA-96-7544-01 19 6926612 6926612 G T EMR1 Missense_Mutation p.R741L 0.22 tolerated(0.06) benign(0.38) TCGA-96-7544-01 19 6986390 6986390 A C EMR4P RNA 0.47 TCGA-96-7544-01 19 7976175 7976175 A G MAP2K7 Missense_Mutation p.Y299C 0.15 deleterious(0) probably_damaging(0.994) TCGA-96-7544-01 19 8807901 8807901 C T ACTL9 Missense_Mutation p.G384D 0.23 deleterious(0) probably_damaging(1) TCGA-96-7544-01 19 9045857 9045857 G A MUC16 Missense_Mutation p.S11925F 0.21 possibly_damaging(0.588) TCGA-96-7544-01 19 9061050 9061050 T C MUC16 Missense_Mutation p.Q8799R 0.21 unknown(0) TCGA-96-7544-01 19 9959844 9959844 C T PIN1 Missense_Mutation p.S154F 0.17 deleterious(0) probably_damaging(0.961) TCGA-96-7544-01 1 101196834 101196834 A T VCAM1 Missense_Mutation p.S429C 0.32 deleterious(0.01) possibly_damaging(0.762) TCGA-96-7544-01 1 1149479 1149479 C T TNFRSF4 Missense_Mutation p.R10H 0.71 deleterious(0.02) unknown(0) TCGA-96-7544-01 1 115524024 115524024 C A SYCP1 Nonsense_Mutation p.S817* 0.32 TCGA-96-7544-01 1 11982674 11982674 C A KIAA2013 Intron 0.48 TCGA-96-7544-01 1 12378318 12378318 G T VPS13D Missense_Mutation p.K2446N 0.59 possibly_damaging(0.782) TCGA-96-7544-01 1 1290473 1290473 C A MXRA8 Missense_Mutation p.A180S 0.46 tolerated(1) benign(0.034) TCGA-96-7544-01 1 150445501 150445501 C T RPRD2 Silent p.G1359G 0.14 TCGA-96-7544-01 1 1509885 1509885 C T SSU72 Missense_Mutation p.R18Q 0.10 deleterious(0.01) possibly_damaging(0.806) TCGA-96-7544-01 1 151280086 151280086 G C PI4KB Silent p.P394P 0.09 TCGA-96-7544-01 1 153277422 153277422 C A PGLYRP3 Splice_Site p.X126_splice 0.15 TCGA-96-7544-01 1 154067488 154067488 C T NUP210L Missense_Mutation p.A704T 0.26 tolerated(1) benign(0.001) TCGA-96-7544-01 1 155448197 155448197 T C ASH1L Silent p.K1488K 0.32 TCGA-96-7544-01 1 157550140 157550140 T A FCRL4 Splice_Site p.X417_splice 0.25 TCGA-96-7544-01 1 157803133 157803133 T A CD5L Missense_Mutation p.R296S 0.30 deleterious(0.02) benign(0.122) TCGA-96-7544-01 1 158517486 158517486 T C OR6Y1 Missense_Mutation p.Y137C 0.31 deleterious(0) probably_damaging(0.999) TCGA-96-7544-01 1 159043207 159043207 A T AIM2 Missense_Mutation p.F28Y 0.33 deleterious(0.02) possibly_damaging(0.707) TCGA-96-7544-01 1 159683625 159683625 G C CRP Nonsense_Mutation p.S122* 0.26 TCGA-96-7544-01 1 169698645 169698645 C G SELE Missense_Mutation p.E295D 0.24 tolerated(0.11) benign(0.082) TCGA-96-7544-01 1 175096102 175096102 C A TNN Missense_Mutation p.P976T 0.24 deleterious(0) probably_damaging(0.986) TCGA-96-7544-01 1 175372718 175372718 G T TNR Missense_Mutation p.H178Q 0.25 deleterious(0.01) possibly_damaging(0.629) TCGA-96-7544-01 1 17555289 17555289 G T PADI1 Silent p.P274P 0.44 TCGA-96-7544-01 1 176671837 176671837 G T PAPPA2 Nonsense_Mutation p.G1111* 0.20 TCGA-96-7544-01 1 176998810 176998810 G C ASTN1 Silent p.T360T 0.25 TCGA-96-7544-01 1 179852011 179852011 G A TOR1AIP1 Missense_Mutation p.R125Q 0.23 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-96-7544-01 1 183534894 183534894 G A NCF2 Silent p.S315S 0.19 TCGA-96-7544-01 1 18691805 18691805 G T IGSF21 Missense_Mutation p.R210M 0.67 deleterious(0.02) possibly_damaging(0.905) TCGA-96-7544-01 1 196227606 196227606 C T KCNT2 Missense_Mutation p.V977I 0.13 tolerated(0.08) possibly_damaging(0.554) TCGA-96-7544-01 1 196705981 196705981 C T CFH Missense_Mutation p.P814L 0.31 deleterious(0.02) probably_damaging(0.996) TCGA-96-7544-01 1 201122986 201122986 C G TMEM9 Missense_Mutation p.K22N 0.24 deleterious(0.02) possibly_damaging(0.783) TCGA-96-7544-01 1 201926482 201926482 A G TIMM17A Missense_Mutation p.I34V 0.13 tolerated(0.34) benign(0.002) TCGA-96-7544-01 1 20976998 20976998 G A PINK1 Silent p.K520K 0.16 TCGA-96-7544-01 1 214791964 214791964 T A CENPF Missense_Mutation p.D136E 0.28 probably_damaging(0.996) TCGA-96-7544-01 1 214816639 214816639 G T CENPF Missense_Mutation p.R1653L 0.30 probably_damaging(0.998) TCGA-96-7544-01 1 215775234 215775234 G T KCTD3 Missense_Mutation p.S320I 0.45 deleterious(0) probably_damaging(0.997) TCGA-96-7544-01 1 215844438 215844438 T A USH2A Missense_Mutation p.Y4670F 0.33 possibly_damaging(0.533) TCGA-96-7544-01 1 216172287 216172287 A G USH2A Missense_Mutation p.F2200S 0.24 benign(0.103) TCGA-96-7544-01 1 216595737 216595737 C A USH2A 5'UTR 0.38 TCGA-96-7544-01 1 226178967 226178967 A G SDE2 Silent p.S206S 0.32 TCGA-96-7544-01 1 228362651 228362651 C G IBA57 Silent p.T200T 0.22 TCGA-96-7544-01 1 22974152 22974152 G A C1QC Missense_Mutation p.G205D 0.59 deleterious(0) probably_damaging(1) TCGA-96-7544-01 1 229771606 229771606 A T URB2 Missense_Mutation p.I416L 0.24 tolerated(0.77) benign(0.001) TCGA-96-7544-01 1 231067480 231067480 A C TTC13 Splice_Site p.X375_splice 0.20 TCGA-96-7544-01 1 232649889 232649889 A T SIPA1L2 Missense_Mutation p.D399E 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-96-7544-01 1 237550636 237550636 T C RYR2 Missense_Mutation p.L211P 0.27 possibly_damaging(0.881) TCGA-96-7544-01 1 240497452 240497452 A T FMN2 Missense_Mutation p.Q1563L 0.25 possibly_damaging(0.57) TCGA-96-7544-01 1 240977014 240977014 G C RGS7 Missense_Mutation p.T287R 0.30 tolerated(0.34) possibly_damaging(0.642) TCGA-96-7544-01 1 247614721 247614721 C G OR2B11 Silent p.V188V 0.19 TCGA-96-7544-01 1 247835782 247835782 G T OR13G1 Missense_Mutation p.P188T 0.25 deleterious(0.02) possibly_damaging(0.701) TCGA-96-7544-01 1 248366921 248366921 A C OR2M3 Silent p.L184L 0.25 TCGA-96-7544-01 1 248617020 248617020 A G OR2T2 Missense_Mutation p.R308G 0.14 deleterious(0.02) benign(0.054) TCGA-96-7544-01 1 248685710 248685710 A G OR2G6 Missense_Mutation p.I255V 0.35 tolerated(0.26) benign(0.163) TCGA-96-7544-01 1 248738034 248738034 G C OR2T34 Missense_Mutation p.Q9E 0.09 tolerated(1) benign(0) TCGA-96-7544-01 1 248814003 248814003 G T OR2T27 Missense_Mutation p.F61L 0.11 deleterious(0.01) possibly_damaging(0.566) TCGA-96-7544-01 1 35578963 35578963 G C ZMYM1 Missense_Mutation p.R511T 0.23 tolerated(0.15) benign(0.21) TCGA-96-7544-01 1 35900516 35900516 G C KIAA0319L Missense_Mutation p.S1043R 0.48 deleterious_low_confidence(0.04) benign(0.033) TCGA-96-7544-01 1 45974579 45974579 G T MMACHC Missense_Mutation p.D181Y 0.38 deleterious(0) probably_damaging(0.987) TCGA-96-7544-01 1 46494577 46494577 G A MAST2 Silent p.P730P 0.30 TCGA-96-7544-01 1 64100661 64100661 G C PGM1 Missense_Mutation p.D300H 0.18 deleterious(0.03) probably_damaging(0.994) TCGA-96-7544-01 1 87045890 87045890 C T CLCA4 Silent p.D874D 0.44 TCGA-96-7544-01 1 92946312 92946312 T A GFI1 Missense_Mutation p.Y211F 0.29 tolerated(0.58) benign(0) TCGA-96-7544-01 20 29965177 29965177 C G DEFB118 3'Flank 0.26 TCGA-96-7544-01 20 30366742 30366742 C T TPX2 Nonsense_Mutation p.R337* 0.20 TCGA-96-7544-01 20 31413855 31413855 G A MAPRE1 Splice_Site p.X41_splice 0.22 TCGA-96-7544-01 20 31619460 31619460 C A BPIFB6 Silent p.R3R 0.37 TCGA-96-7544-01 20 33567536 33567536 A G MYH7B Missense_Mutation p.M133V 0.24 benign(0.143) TCGA-96-7544-01 20 43739148 43739148 C G WFDC5 Missense_Mutation p.R87P 0.19 deleterious(0.01) probably_damaging(0.977) TCGA-96-7544-01 20 44512623 44512623 G A ZSWIM1 Silent p.R464R 0.15 TCGA-96-7544-01 20 44984496 44984496 G A SLC35C2 Missense_Mutation p.S118F 0.30 deleterious(0) probably_damaging(0.992) TCGA-96-7544-01 20 52645411 52645411 C - BCAS1 Frame_Shift_Del p.E83Rfs*15 0.14 TCGA-96-7544-01 20 62201868 62201868 C A HELZ2 Missense_Mutation p.V187F 0.26 deleterious(0) possibly_damaging(0.716) TCGA-96-7544-01 21 32526659 32526659 C A TIAM1 Missense_Mutation p.G1026V 0.25 tolerated(0.33) benign(0.004) TCGA-96-7544-01 21 34134476 34134476 C A PAXBP1 Missense_Mutation p.D268Y 0.26 deleterious(0) probably_damaging(0.983) TCGA-96-7544-01 21 40571385 40571385 C A BRWD1 Nonsense_Mutation p.E1653* 0.31 TCGA-96-7544-01 21 41741110 41741110 C A DSCAM Nonsense_Mutation p.G191* 0.18 TCGA-96-7544-01 21 47635181 47635181 A G LSS Silent p.S308S 0.18 TCGA-96-7544-01 21 47987458 47987458 G A DIP2A Missense_Mutation p.E1547K 0.38 deleterious(0) possibly_damaging(0.899) TCGA-96-7544-01 22 20307214 20307214 G A DGCR6L Silent p.L73L 0.27 TCGA-96-7544-01 22 26224902 26224902 G C MYO18B Silent p.R982R 0.45 TCGA-96-7544-01 22 35689024 35689024 G A HMGXB4 Missense_Mutation p.D560N 0.13 deleterious(0) probably_damaging(0.998) TCGA-96-7544-01 22 37581409 37581409 G A C1QTNF6 Silent p.L46L 0.29 TCGA-96-7544-01 22 50436601 50436609 TACGGCAGC - IL17REL In_Frame_Del p.G244_K247delinsE 0.53 TCGA-96-7544-01 2 10098918 10098918 C A GRHL1 Missense_Mutation p.P71T 0.23 deleterious(0.03) benign(0.098) TCGA-96-7544-01 2 110935897 110935897 C G NPHP1 Intron 0.36 TCGA-96-7544-01 2 137814067 137814067 G T THSD7B Missense_Mutation p.G73W 0.25 deleterious(0) probably_damaging(0.992) TCGA-96-7544-01 2 138373853 138373853 G T THSD7B Nonsense_Mutation p.E1181* 0.32 TCGA-96-7544-01 2 141625403 141625403 C A LRP1B Missense_Mutation p.R1445S 0.42 benign(0.227) TCGA-96-7544-01 2 144765099 144765099 G A GTDC1 Silent p.F175F 0.36 TCGA-96-7544-01 2 145155885 145155885 G T ZEB2 Silent p.R957R 0.23 TCGA-96-7544-01 2 153575118 153575118 G T ARL6IP6 5'UTR 0.25 TCGA-96-7544-01 2 160755253 160755253 C G LY75-CD302 Missense_Mutation p.D138H 0.18 deleterious(0.04) probably_damaging(0.996) TCGA-96-7544-01 2 1643100 1643100 C G PXDN Missense_Mutation p.K1349N 0.22 tolerated(0.44) benign(0.001) TCGA-96-7544-01 2 166152356 166152356 C A SCN2A Missense_Mutation p.P8Q 0.17 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-96-7544-01 2 168107940 168107940 T G XIRP2 Silent p.S3346S 0.24 TCGA-96-7544-01 2 176983939 176983939 G A HOXD10 Missense_Mutation p.A335T 0.28 tolerated(0.15) possibly_damaging(0.845) TCGA-96-7544-01 2 179404824 179404824 G C TTN Missense_Mutation p.P32690R 0.28 TCGA-96-7544-01 2 179588844 179588844 G A TTN Nonsense_Mutation p.R7048* 0.23 TCGA-96-7544-01 2 179606271 179606271 C A TTN Missense_Mutation p.D3897Y 0.25 TCGA-96-7544-01 2 179701773 179701773 C G CCDC141 Missense_Mutation p.E1391D 0.23 tolerated(0.07) benign(0.159) TCGA-96-7544-01 2 189862061 189862061 G T COL3A1 Splice_Site p.X606_splice 0.22 TCGA-96-7544-01 2 189862062 189862062 G T COL3A1 Missense_Mutation p.G606C 0.23 unknown(0) TCGA-96-7544-01 2 204075756 204075756 G T NBEAL1 Missense_Mutation p.D2592Y 0.19 tolerated(0.31) benign(0.047) TCGA-96-7544-01 2 204304124 204304124 G C RAPH1 3'UTR 0.14 TCGA-96-7544-01 2 204319246 204319246 C T RAPH1 Silent p.V440V 0.49 TCGA-96-7544-01 2 205969223 205969223 C A PARD3B Missense_Mutation p.T193N 0.53 tolerated(0.28) benign(0.043) TCGA-96-7544-01 2 206592682 206592682 A T NRP2 Missense_Mutation p.Q353L 0.12 deleterious(0.03) probably_damaging(0.949) TCGA-96-7544-01 2 207175664 207175664 C T ZDBF2 Missense_Mutation p.R2138C 0.15 tolerated(0.12) benign(0.025) TCGA-96-7544-01 2 208994530 208994530 G T CRYGC 5'UTR 0.59 TCGA-96-7544-01 2 209207329 209207329 A T PIKFYVE Silent p.A1661A 0.68 TCGA-96-7544-01 2 210570371 210570371 G A MAP2 Missense_Mutation p.R1551Q 0.12 deleterious(0) probably_damaging(0.998) TCGA-96-7544-01 2 211069343 211069343 T C ACADL Missense_Mutation p.N278D 0.13 tolerated(0.07) probably_damaging(0.911) TCGA-96-7544-01 2 211447379 211447379 T A CPS1 Silent p.P195P 0.62 TCGA-96-7544-01 2 232137728 232137728 A T ARMC9 Missense_Mutation p.E424V 0.42 tolerated(0.21) benign(0.175) TCGA-96-7544-01 2 233393572 233393572 T C CHRND Silent p.S170S 0.40 TCGA-96-7544-01 2 27301989 27301989 C G EMILIN1 Missense_Mutation p.A19G 0.23 benign(0.02) TCGA-96-7544-01 2 27559267 27559267 C A GTF3C2 Nonsense_Mutation p.E385* 0.30 TCGA-96-7544-01 2 33752236 33752236 C T RASGRP3 Silent p.S280S 0.28 TCGA-96-7544-01 2 39025321 39025321 C - DHX57 3'UTR 0.26 TCGA-96-7544-01 2 39893244 39893244 G A TMEM178A Missense_Mutation p.E44K 0.37 tolerated(1) benign(0.102) TCGA-96-7544-01 2 40656148 40656148 C A SLC8A1 Missense_Mutation p.V425L 0.23 tolerated(0.61) possibly_damaging(0.762) TCGA-96-7544-01 2 44101624 44101624 T A ABCG8 Splice_Site p.X496_splice 0.28 TCGA-96-7544-01 2 46587864 46587864 G T EPAS1 Missense_Mutation p.R181L 0.29 deleterious(0) probably_damaging(0.991) TCGA-96-7544-01 2 49210269 49210269 G T FSHR Missense_Mutation p.N187K 0.33 tolerated(0.34) benign(0.07) TCGA-96-7544-01 2 74041191 74041191 T A C2orf78 Missense_Mutation p.Y229N 0.24 deleterious(0.04) probably_damaging(0.986) TCGA-96-7544-01 2 74689840 74689840 T A MOGS Missense_Mutation p.Q359L 0.29 tolerated(0.06) benign(0.21) TCGA-96-7544-01 2 75921396 75921396 C A GCFC2 Nonsense_Mutation p.E331* 0.22 TCGA-96-7544-01 2 97368460 97368460 G T LMAN2L 3'Flank 0.27 TCGA-96-7544-01 3 107096677 107096677 C G CCDC54 Missense_Mutation p.F81L 0.12 tolerated(1) benign(0) TCGA-96-7544-01 3 119305163 119305163 G A ADPRH Silent p.L110L 0.30 TCGA-96-7544-01 3 122288758 122288758 G A DTX3L Missense_Mutation p.G608R 0.17 deleterious(0) probably_damaging(0.998) TCGA-96-7544-01 3 122290565 122290565 G C DTX3L Missense_Mutation p.E732Q 0.12 tolerated(0.66) benign(0.002) TCGA-96-7544-01 3 125833444 125833444 G T ALDH1L1 Missense_Mutation p.L690I 0.21 tolerated(0.09) possibly_damaging(0.774) TCGA-96-7544-01 3 126071452 126071452 C A KLF15 Missense_Mutation p.W105L 0.18 tolerated(0.12) benign(0.008) TCGA-96-7544-01 3 130311448 130311448 G T COL6A6 Missense_Mutation p.G1446C 0.15 deleterious(0) probably_damaging(1) TCGA-96-7544-01 3 133666180 133666180 G C SLCO2A1 Missense_Mutation p.I405M 0.24 tolerated(0.44) benign(0.1) TCGA-96-7544-01 3 136088089 136088089 G A STAG1 Silent p.F802F 0.20 TCGA-96-7544-01 3 140282817 140282817 G T CLSTN2 Missense_Mutation p.A833S 0.18 tolerated(0.07) benign(0.086) TCGA-96-7544-01 3 14862967 14862967 G C FGD5 Missense_Mutation p.A797P 0.43 tolerated(0.1) benign(0.008) TCGA-96-7544-01 3 150300988 150300988 A T EIF2A Missense_Mutation p.K543I 0.63 deleterious(0) benign(0.141) TCGA-96-7544-01 3 152150528 152150528 G A MBNL1 Missense_Mutation p.S123N 0.23 tolerated(0.16) possibly_damaging(0.753) TCGA-96-7544-01 3 156867140 156867140 T C CCNL1 Missense_Mutation p.R390G 0.21 tolerated(0.3) possibly_damaging(0.879) TCGA-96-7544-01 3 164748546 164748546 A G SI Missense_Mutation p.L949S 0.17 tolerated(0.74) benign(0.009) TCGA-96-7544-01 3 164786893 164786893 C A SI Missense_Mutation p.V116F 0.10 tolerated(0.05) benign(0.012) TCGA-96-7544-01 3 169642919 169642919 T C SAMD7 Silent p.T95T 0.10 TCGA-96-7544-01 3 170150510 170150510 G T CLDN11 Missense_Mutation p.S197I 0.20 deleterious(0.02) benign(0.154) TCGA-96-7544-01 3 174951847 174951847 A T NAALADL2 Silent p.P224P 0.44 TCGA-96-7544-01 3 179527261 179527261 A C PEX5L Missense_Mutation p.D450E 0.26 tolerated(0.85) benign(0.001) TCGA-96-7544-01 3 183368148 183368148 G T KLHL24 Missense_Mutation p.V2L 0.28 tolerated_low_confidence(0.08) probably_damaging(0.935) TCGA-96-7544-01 3 183479374 183479374 T G YEATS2 Missense_Mutation p.I579R 0.21 deleterious_low_confidence(0) benign(0.248) TCGA-96-7544-01 3 183906570 183906570 A C ABCF3 Silent p.A286A 0.29 TCGA-96-7544-01 3 184098552 184098552 T C CHRD Missense_Mutation p.V74A 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-96-7544-01 3 186969447 186969447 C A MASP1 Missense_Mutation p.C329F 0.33 deleterious(0) probably_damaging(1) TCGA-96-7544-01 3 187387023 187387023 T G SST Missense_Mutation p.N61H 0.26 tolerated(0.07) benign(0.166) TCGA-96-7544-01 3 35780863 35780863 G C ARPP21 Missense_Mutation p.G568R 0.46 deleterious(0.03) benign(0.045) TCGA-96-7544-01 3 51264832 51264832 G A DOCK3 Missense_Mutation p.R499Q 0.35 tolerated(0.07) probably_damaging(0.979) TCGA-96-7544-01 3 52295403 52295403 T G WDR82 Missense_Mutation p.N140T 0.40 tolerated(0.36) benign(0.178) TCGA-96-7544-01 3 62358378 62358378 C A FEZF2 Missense_Mutation p.D56Y 0.44 deleterious(0.01) possibly_damaging(0.862) TCGA-96-7544-01 3 64133214 64133214 C T PRICKLE2 Missense_Mutation p.G318S 0.37 tolerated(0.06) benign(0.15) TCGA-96-7544-01 3 73006475 73006475 A G GXYLT2 Silent p.L316L 0.56 TCGA-96-7544-01 3 8794619 8794619 C G OXTR 3'UTR 0.62 TCGA-96-7544-01 3 98216638 98216638 C A OR5K2 Silent p.T38T 0.19 TCGA-96-7544-01 4 102981510 102981510 G T BANK1 Missense_Mutation p.W704C 0.27 deleterious(0) probably_damaging(0.999) TCGA-96-7544-01 4 103537685 103537685 A T NFKB1 Silent p.S948S 0.31 TCGA-96-7544-01 4 113351992 113351992 G T ALPK1 Missense_Mutation p.R430I 0.21 deleterious(0.01) possibly_damaging(0.463) TCGA-96-7544-01 4 115997537 115997537 T A NDST4 Missense_Mutation p.D219V 0.30 deleterious(0) probably_damaging(0.998) TCGA-96-7544-01 4 120981408 120981408 C A MAD2L1 Missense_Mutation p.L161F 0.23 deleterious(0.04) possibly_damaging(0.614) TCGA-96-7544-01 4 122831431 122831431 A T TRPC3 Missense_Mutation p.F557Y 0.24 deleterious(0.03) benign(0.443) TCGA-96-7544-01 4 13371558 13371558 G A RAB28 Intron 0.25 TCGA-96-7544-01 4 164393981 164393981 G C TKTL2 Missense_Mutation p.I302M 0.30 deleterious(0.02) benign(0.015) TCGA-96-7544-01 4 175896915 175896915 T A ADAM29 Missense_Mutation p.V80E 0.42 deleterious(0) probably_damaging(0.995) TCGA-96-7544-01 4 17609182 17609182 C G LAP3 Missense_Mutation p.F510L 0.25 deleterious(0.03) benign(0.307) TCGA-96-7544-01 4 177032825 177032825 T C WDR17 Missense_Mutation p.C56R 0.47 deleterious(0) probably_damaging(0.997) TCGA-96-7544-01 4 25831719 25831719 C A SEL1L3 Splice_Site p.X386_splice 0.35 TCGA-96-7544-01 4 39506928 39506928 T C UGDH Missense_Mutation p.Y367C 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-96-7544-01 4 5690987 5690987 C A EVC2 Silent p.S201S 0.28 TCGA-96-7544-01 4 71508172 71508172 C A ENAM Missense_Mutation p.H343Q 0.29 tolerated(0.4) benign(0.126) TCGA-96-7544-01 4 73986023 73986023 G C ANKRD17 Missense_Mutation p.S1294C 0.10 possibly_damaging(0.84) TCGA-96-7544-01 4 79305242 79305242 A G FRAS1 Missense_Mutation p.D1198G 0.21 possibly_damaging(0.792) TCGA-96-7544-01 4 88731915 88731915 A G IBSP Missense_Mutation p.K135R 0.19 deleterious(0.03) possibly_damaging(0.876) TCGA-96-7544-01 4 89744239 89744239 C A FAM13A Intron 0.26 TCGA-96-7544-01 5 112312529 112312529 C T DCP2 5'UTR 0.44 TCGA-96-7544-01 5 115351359 115351359 A T AQPEP Missense_Mutation p.T885S 0.12 tolerated(1) benign(0.009) TCGA-96-7544-01 5 118513718 118513718 A G DMXL1 Missense_Mutation p.N2305S 0.40 tolerated(0.88) benign(0.088) TCGA-96-7544-01 5 118788161 118788161 G C HSD17B4 5'Flank 0.60 TCGA-96-7544-01 5 128863491 128863491 T A ADAMTS19 Silent p.R373R 0.35 TCGA-96-7544-01 5 131329939 131329939 C A ACSL6 Missense_Mutation p.V19F 0.73 tolerated_low_confidence(0.05) benign(0.003) TCGA-96-7544-01 5 135692515 135692515 G A TRPC7 Silent p.G187G 0.38 TCGA-96-7544-01 5 135692718 135692718 G T TRPC7 Missense_Mutation p.R120S 0.41 deleterious(0) probably_damaging(0.999) TCGA-96-7544-01 5 13737535 13737535 C G DNAH5 Missense_Mutation p.E3761Q 0.55 possibly_damaging(0.728) TCGA-96-7544-01 5 13820539 13820539 T A DNAH5 Nonsense_Mutation p.R2253* 0.61 TCGA-96-7544-01 5 140502334 140502334 G T PCDHB4 Nonsense_Mutation p.E252* 0.24 TCGA-96-7544-01 5 140774405 140774405 G T PCDHGA8 Missense_Mutation p.L675F 0.44 deleterious_low_confidence(0.01) benign(0.354) TCGA-96-7544-01 5 140794518 140794518 G T PCDHGA10 Silent p.V592V 0.39 TCGA-96-7544-01 5 145547778 145547778 A G LARS Silent p.P115P 0.08 TCGA-96-7544-01 5 147019222 147019222 G T JAKMIP2 Silent p.G501G 0.38 TCGA-96-7544-01 5 148730833 148730833 G C GRPEL2 Missense_Mutation p.Q222H 0.22 tolerated(0.12) benign(0.005) TCGA-96-7544-01 5 149433974 149433974 A G CSF1R Missense_Mutation p.C892R 0.39 deleterious(0) probably_damaging(1) TCGA-96-7544-01 5 22078638 22078638 G - CDH12 Frame_Shift_Del p.Q50Nfs*33 0.35 TCGA-96-7544-01 5 23527621 23527621 G T PRDM9 Missense_Mutation p.E808D 0.14 tolerated(0.16) probably_damaging(0.986) TCGA-96-7544-01 5 24505252 24505252 C A CDH10 Missense_Mutation p.W454C 0.34 deleterious(0) possibly_damaging(0.529) TCGA-96-7544-01 5 24505253 24505253 C G CDH10 Missense_Mutation p.W454S 0.34 deleterious(0) benign(0.213) TCGA-96-7544-01 5 26886178 26886178 G A CDH9 Silent p.V509V 0.22 TCGA-96-7544-01 5 34757679 34757679 A G RAI14 Missense_Mutation p.K51R 0.14 deleterious(0) probably_damaging(0.998) TCGA-96-7544-01 5 41000359 41000359 C A MROH2B Missense_Mutation p.R1482M 0.18 deleterious(0.01) possibly_damaging(0.854) TCGA-96-7544-01 5 41382430 41382430 T A PLCXD3 Nonsense_Mutation p.R104* 0.47 TCGA-96-7544-01 5 619148 619148 G C CEP72 Missense_Mutation p.K42N 0.12 deleterious(0) probably_damaging(0.972) TCGA-96-7544-01 5 76722332 76722332 C A PDE8B Missense_Mutation p.L871I 0.39 deleterious(0.01) probably_damaging(0.979) TCGA-96-7544-01 5 89949498 89949498 A T GPR98 Silent p.G1369G 0.33 TCGA-96-7544-01 6 118635249 118635249 C A SLC35F1 Missense_Mutation p.S354Y 0.10 deleterious(0.04) possibly_damaging(0.702) TCGA-96-7544-01 6 127797532 127797532 C T SOGA3 Missense_Mutation p.D547N 0.22 tolerated(0.07) probably_damaging(0.93) TCGA-96-7544-01 6 131201322 131201322 C G EPB41L2 Missense_Mutation p.D620H 0.11 deleterious(0) benign(0.299) TCGA-96-7544-01 6 132176142 132176142 C T ENPP1 Missense_Mutation p.L232F 0.33 deleterious(0.03) probably_damaging(0.995) TCGA-96-7544-01 6 132874616 132874616 C G TAAR8 Missense_Mutation p.T262R 0.18 deleterious(0) possibly_damaging(0.852) TCGA-96-7544-01 6 149982927 149982927 A C LATS1 Missense_Mutation p.S1111A 0.17 tolerated_low_confidence(0.39) benign(0.002) TCGA-96-7544-01 6 151939082 151939082 C A CCDC170 Missense_Mutation p.L650M 0.29 deleterious(0) probably_damaging(1) TCGA-96-7544-01 6 152527343 152527343 C A SYNE1 Missense_Mutation p.R7660L 0.27 benign(0.031) TCGA-96-7544-01 6 152674439 152674439 C G SYNE1 Missense_Mutation p.V3738L 0.19 benign(0.022) TCGA-96-7544-01 6 155153575 155153575 C G SCAF8 Silent p.P954P 0.33 TCGA-96-7544-01 6 163149250 163149250 A G PACRG 5'UTR 0.32 TCGA-96-7544-01 6 168226902 168226902 G A MLLT4 5'Flank 0.26 TCGA-96-7544-01 6 26271532 26271532 C - HIST1H3G Frame_Shift_Del p.S29Afs*8 0.33 TCGA-96-7544-01 6 29054243 29054243 T G OR2B3 Missense_Mutation p.Q261H 0.38 deleterious(0) probably_damaging(0.987) TCGA-96-7544-01 6 29275232 29275232 G A OR14J1 Missense_Mutation p.E256K 0.39 deleterious(0.01) possibly_damaging(0.843) TCGA-96-7544-01 6 32020643 32020643 G A TNXB Silent p.T2971T 0.40 TCGA-96-7544-01 6 32036599 32036599 C T TNXB Missense_Mutation p.V1968I 0.20 benign(0.349) TCGA-96-7544-01 6 38879290 38879290 A G DNAH8 Missense_Mutation p.I3046V 0.44 benign(0.173) TCGA-96-7544-01 6 39048482 39048482 G T GLP1R Missense_Mutation p.M397I 0.43 deleterious(0.01) benign(0.029) TCGA-96-7544-01 6 44270897 44270897 C A AARS2 Missense_Mutation p.V721L 0.36 deleterious(0) probably_damaging(0.999) TCGA-96-7544-01 6 55378848 55378848 T C HMGCLL1 Silent p.R210R 0.22 TCGA-96-7544-01 6 57512651 57512651 T C PRIM2 3'UTR 0.09 TCGA-96-7544-01 6 63990294 63990294 C T LGSN Missense_Mutation p.D388N 0.28 tolerated(0.35) benign(0.019) TCGA-96-7544-01 6 63990723 63990723 C G LGSN Missense_Mutation p.D245H 0.26 deleterious(0) possibly_damaging(0.493) TCGA-96-7544-01 6 64394273 64394273 C G PHF3 Nonsense_Mutation p.S217* 0.16 TCGA-96-7544-01 6 66204725 66204725 A G EYS Silent p.A193A 0.18 TCGA-96-7544-01 6 73023232 73023232 C A RIMS1 Nonsense_Mutation p.Y1329* 0.18 TCGA-96-7544-01 6 75901433 75901433 T C COL12A1 Silent p.G126G 0.18 TCGA-96-7544-01 6 89322304 89322304 T G RNGTT 3'UTR 0.26 TCGA-96-7544-01 7 100388706 100388706 G C ZAN Missense_Mutation p.K2499N 0.27 unknown(0) TCGA-96-7544-01 7 100470832 100470832 G C TRIP6 Missense_Mutation p.Q446H 0.33 deleterious(0.03) probably_damaging(0.987) TCGA-96-7544-01 7 100551601 100551601 T C MUC3A Missense_Mutation p.S118P 0.24 deleterious(0.01) possibly_damaging(0.665) TCGA-96-7544-01 7 102854518 102854518 A T DPY19L2P2 RNA 0.16 TCGA-96-7544-01 7 106509514 106509514 C A PIK3CG Missense_Mutation p.T503K 0.21 deleterious(0.01) probably_damaging(0.987) TCGA-96-7544-01 7 112102176 112102176 G T IFRD1 Missense_Mutation p.A247S 0.17 tolerated(0.43) benign(0.006) TCGA-96-7544-01 7 129940686 129940686 C A CPA4 Missense_Mutation p.Q106K 0.27 tolerated(0.89) benign(0.001) TCGA-96-7544-01 7 130417951 130417951 C A KLF14 Missense_Mutation p.V304L 0.24 tolerated_low_confidence(0.27) benign(0.026) TCGA-96-7544-01 7 139636104 139636104 G A TBXAS1 Missense_Mutation p.E151K 0.32 deleterious(0.05) benign(0.117) TCGA-96-7544-01 7 142148986 142148986 C T TRBV5-5 Silent p.L95L 0.21 TCGA-96-7544-01 7 142149054 142149054 C G TRBV5-5 Missense_Mutation p.E73Q 0.14 tolerated(0.52) benign(0.023) TCGA-96-7544-01 7 142149168 142149168 C G TRBV5-5 Missense_Mutation p.G35R 0.16 tolerated(0.1) benign(0.386) TCGA-96-7544-01 7 142149213 142149213 C T TRBV5-5 Missense_Mutation p.D20N 0.14 tolerated(0.07) benign(0.031) TCGA-96-7544-01 7 142428749 142428749 A G TRBV28 Missense_Mutation p.K37E 0.27 tolerated(0.22) benign(0.022) TCGA-96-7544-01 7 142498940 142498940 A T TRBC2 Nonsense_Mutation p.R73* 0.13 TCGA-96-7544-01 7 143632438 143632438 C T OR2F2 Missense_Mutation p.T38I 0.43 deleterious(0.01) benign(0.008) TCGA-96-7544-01 7 150718313 150718313 T C ATG9B Missense_Mutation p.I309V 0.18 deleterious(0.03) benign(0.034) TCGA-96-7544-01 7 20441447 20441447 A G ITGB8 Missense_Mutation p.H462R 0.24 tolerated(0.86) benign(0.017) TCGA-96-7544-01 7 21657256 21657256 A T DNAH11 Missense_Mutation p.K1377M 0.36 probably_damaging(0.991) TCGA-96-7544-01 7 30795280 30795280 C T INMT Missense_Mutation p.P202L 0.23 deleterious(0.02) benign(0) TCGA-96-7544-01 7 4002293 4002293 C G SDK1 Silent p.V413V 0.12 TCGA-96-7544-01 7 43917596 43917596 T C URGCP Missense_Mutation p.Y489C 0.26 deleterious(0.02) probably_damaging(0.957) TCGA-96-7544-01 7 44102506 44102506 C T PGAM2 Missense_Mutation p.E207K 0.28 tolerated(0.29) benign(0.034) TCGA-96-7544-01 7 48311611 48311611 G C ABCA13 Missense_Mutation p.R783T 0.28 benign(0.011) TCGA-96-7544-01 7 53104021 53104021 C A POM121L12 Silent p.P219P 0.22 TCGA-96-7544-01 7 57522174 57522174 G T ZNF716 Missense_Mutation p.L16F 0.15 deleterious(0) probably_damaging(0.999) TCGA-96-7544-01 7 63726294 63726294 C A ZNF679 Missense_Mutation p.Q95K 0.11 tolerated(0.14) benign(0.086) TCGA-96-7544-01 7 95838247 95838247 T C SLC25A13 Missense_Mutation p.H124R 0.25 tolerated(0.59) benign(0.02) TCGA-96-7544-01 7 99022849 99022849 C A ATP5J2-PTCD1 Missense_Mutation p.V485L 0.24 tolerated(0.8) benign(0.004) TCGA-96-7544-01 8 100866426 100866426 G A VPS13B Silent p.A3628A 0.58 TCGA-96-7544-01 8 10470559 10470559 G T RP1L1 Missense_Mutation p.T350K 0.34 possibly_damaging(0.906) TCGA-96-7544-01 8 116599617 116599617 C A TRPS1 Nonsense_Mutation p.E771* 0.57 TCGA-96-7544-01 8 131193022 131193022 C A ASAP1 Missense_Mutation p.R212L 0.49 deleterious(0) probably_damaging(0.931) TCGA-96-7544-01 8 142437124 142437124 C T PTP4A3 Missense_Mutation p.A95V 0.55 deleterious(0.01) benign(0.049) TCGA-96-7544-01 8 21960380 21960380 G C FAM160B2 Missense_Mutation p.V724L 0.32 deleterious(0) probably_damaging(0.972) TCGA-96-7544-01 8 22265920 22265920 A G SLC39A14 Missense_Mutation p.Q123R 0.29 deleterious(0.01) probably_damaging(0.953) TCGA-96-7544-01 8 39873019 39873019 T A IDO2 Silent p.P387P 0.48 TCGA-96-7544-01 8 41551621 41551621 C A ANK1 Splice_Site p.X1151_splice 0.34 TCGA-96-7544-01 8 42587216 42587216 T C CHRNB3 Missense_Mutation p.Y256H 0.23 deleterious(0.01) probably_damaging(1) TCGA-96-7544-01 8 48883437 48883437 G A MCM4 Splice_Site p.X600_splice 0.26 TCGA-96-7544-01 8 53555096 53555096 C G RB1CC1 Missense_Mutation p.K1384N 0.09 tolerated(0.05) benign(0.063) TCGA-96-7544-01 8 55538327 55538327 G T RP1 Missense_Mutation p.A629S 0.16 tolerated(0.1) benign(0.114) TCGA-96-7544-01 8 68130101 68130101 A G ARFGEF1 Missense_Mutation p.L1510P 0.39 tolerated(0.25) possibly_damaging(0.707) TCGA-96-7544-01 9 104449439 104449439 G T GRIN3A Missense_Mutation p.S248Y 0.36 tolerated(0.13) possibly_damaging(0.59) TCGA-96-7544-01 9 109694678 109694678 G T ZNF462 Intron 0.39 TCGA-96-7544-01 9 111625646 111625646 C G ACTL7A Missense_Mutation p.I348M 0.41 tolerated(0.06) possibly_damaging(0.72) TCGA-96-7544-01 9 117008168 117008168 G A COL27A1 Missense_Mutation p.R986Q 0.40 unknown(0) TCGA-96-7544-01 9 128061254 128061254 A T GAPVD1 Missense_Mutation p.L18F 0.27 deleterious(0) probably_damaging(0.999) TCGA-96-7544-01 9 133780679 133780679 G A FIBCD1 Silent p.S356S 0.39 TCGA-96-7544-01 9 135163979 135163979 C - SETX Frame_Shift_Del p.V2056Ffs*2 0.31 TCGA-96-7544-01 9 139974552 139974552 T C UAP1L1 Missense_Mutation p.I379T 0.52 deleterious(0) probably_damaging(0.999) TCGA-96-7544-01 9 140062315 140062315 T A GRIN1 3'UTR 0.65 TCGA-96-7544-01 9 26990192 26990192 G T IFT74 Missense_Mutation p.A196S 0.31 tolerated(0.59) benign(0.003) TCGA-96-7544-01 9 65507509 65507509 C T SPATA31A7 Silent p.Q102Q 0.23 TCGA-96-7544-01 9 69117827 69117827 T A PGM5P2 RNA 0.26 TCGA-96-7544-01 9 77257718 77257718 C A RORB Silent p.T208T 0.35 TCGA-96-7544-01 9 7799543 7799543 G A TMEM261 Silent p.Y64Y 0.23 TCGA-96-7544-01 9 88190385 88190385 T C AGTPBP1 Silent p.L1076L 0.43 TCGA-96-7544-01 9 90266545 90266545 G A DAPK1 Missense_Mutation p.G577D 0.42 deleterious(0) probably_damaging(1) TCGA-96-7544-01 9 94903886 94903886 G C snoU13 3'Flank 0.31 TCGA-96-7544-01 X 101396053 101396053 G T TCEAL6 Missense_Mutation p.P84Q 0.56 tolerated(0.06) possibly_damaging(0.664) TCGA-96-7544-01 X 103041407 103041407 C A PLP1 Missense_Mutation p.Q69K 0.59 tolerated(0.43) benign(0.338) TCGA-96-7544-01 X 103349464 103349464 C A SLC25A53 Missense_Mutation p.K159N 0.47 tolerated(0.22) benign(0.068) TCGA-96-7544-01 X 105281041 105281041 T A SERPINA7 Silent p.P3P 0.48 TCGA-96-7544-01 X 122757059 122757059 C T THOC2 Silent p.P1193P 0.68 TCGA-96-7544-01 X 123539111 123539111 T A TENM1 Missense_Mutation p.T1721S 0.59 tolerated(0.26) benign(0.004) TCGA-96-7544-01 X 134990251 134990251 C A SAGE1 Missense_Mutation p.A388D 0.50 deleterious(0) benign(0.257) TCGA-96-7544-01 X 135574306 135574306 C T BRS3 Silent p.C324C 0.53 TCGA-96-7544-01 X 141291500 141291500 G C MAGEC2 Missense_Mutation p.P92A 0.57 tolerated(0.26) benign(0.019) TCGA-96-7544-01 X 32305661 32305661 T C DMD Missense_Mutation p.Y2092C 0.61 possibly_damaging(0.878) TCGA-96-7544-01 X 49230806 49230806 G A GAGE2C Silent p.K70K 0.20 TCGA-96-7544-01 X 51638186 51638186 A G MAGED1 Missense_Mutation p.Q84R 0.48 deleterious_low_confidence(0) unknown(0) TCGA-96-7544-01 X 53590743 53590743 C G HUWE1 Missense_Mutation p.E2357Q 0.31 possibly_damaging(0.643) TCGA-96-7544-01 X 73065621 73065621 C A XIST RNA 0.43 TCGA-96-7544-01 X 84362660 84362660 G C SATL1 Missense_Mutation p.R439G 0.70 tolerated(0.4) benign(0.115) TCGA-96-7544-01 X 89177489 89177489 G A TGIF2LX Silent p.L135L 0.45 TCGA-96-7545-01 10 48429110 48429110 A G GDF10 Missense_Mutation p.V259A 0.41 deleterious(0) probably_damaging(0.938) TCGA-96-7545-01 10 81918869 81918869 G A ANXA11 Silent p.G421G 0.22 TCGA-96-7545-01 11 11292803 11292803 C T GALNT18 Missense_Mutation p.C571Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-96-7545-01 11 1298252 1298252 G T TOLLIP 3'UTR 0.18 TCGA-96-7545-01 11 55563485 55563485 C A OR5D14 Missense_Mutation p.L152I 0.17 tolerated(0.34) benign(0.005) TCGA-96-7545-01 11 55761716 55761716 G A OR5F1 Missense_Mutation p.P129L 0.31 deleterious(0) probably_damaging(0.935) TCGA-96-7545-01 11 56000578 56000578 A G OR5T2 Silent p.C28C 0.19 TCGA-96-7545-01 11 70333665 70333665 G C SHANK2 Silent p.S912S 0.17 TCGA-96-7545-01 11 74056629 74056629 C T PGM2L1 Missense_Mutation p.C368Y 0.32 tolerated(0.23) possibly_damaging(0.761) TCGA-96-7545-01 12 112720997 112720997 G A HECTD4 Missense_Mutation p.S338F 0.27 possibly_damaging(0.875) TCGA-96-7545-01 12 113624570 113624570 C T RITA1 Silent p.L7L 0.21 TCGA-96-7545-01 12 130184745 130184745 A G TMEM132D Missense_Mutation p.V193A 0.12 deleterious(0.02) probably_damaging(0.954) TCGA-96-7545-01 12 133226046 133226046 C A POLE Missense_Mutation p.R1284L 0.11 tolerated(0.06) benign(0.001) TCGA-96-7545-01 12 43826237 43826237 C T ADAMTS20 Missense_Mutation p.R989Q 0.12 deleterious(0) probably_damaging(1) TCGA-96-7545-01 12 52159725 52159725 G A SCN8A Missense_Mutation p.E939K 0.17 deleterious(0) possibly_damaging(0.773) TCGA-96-7545-01 12 52775291 52775291 A T KRT84 Missense_Mutation p.S311T 0.22 tolerated(0.31) probably_damaging(0.995) TCGA-96-7545-01 12 56524840 56524840 G A ESYT1 Missense_Mutation p.G195E 0.10 deleterious(0) probably_damaging(0.995) TCGA-96-7545-01 12 57436924 57436924 C T MYO1A Missense_Mutation p.A344T 0.19 deleterious(0) probably_damaging(0.997) TCGA-96-7545-01 12 64536121 64536121 T A SRGAP1 Missense_Mutation p.L976Q 0.28 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-96-7545-01 12 70953405 70953405 C T PTPRB Splice_Site p.X1478_splice 0.23 TCGA-96-7545-01 12 71960418 71960418 G T LGR5 Silent p.L312L 0.21 TCGA-96-7545-01 12 75441985 75441985 G T KCNC2 Missense_Mutation p.F576L 0.16 deleterious_low_confidence(0.01) benign(0.318) TCGA-96-7545-01 12 7651735 7651735 A G CD163 Silent p.S169S 0.14 TCGA-96-7545-01 12 90020341 90020341 T A ATP2B1 Missense_Mutation p.E340V 0.23 tolerated(0.08) benign(0.401) TCGA-96-7545-01 12 9258872 9258872 A T A2M Missense_Mutation p.V355E 0.18 deleterious(0.01) benign(0.028) TCGA-96-7545-01 12 94645200 94645200 A G PLXNC1 Splice_Site p.X927_splice 0.06 TCGA-96-7545-01 13 27333815 27333815 G T GPR12 Silent p.V50V 0.27 TCGA-96-7545-01 13 86368335 86368335 C T SLITRK6 Missense_Mutation p.G770E 0.20 deleterious(0.03) probably_damaging(0.985) TCGA-96-7545-01 14 20443686 20443686 T C OR4K15 Silent p.T3T 0.22 TCGA-96-7545-01 14 29237704 29237704 G A FOXG1 Missense_Mutation p.V407I 0.31 deleterious_low_confidence(0.03) benign(0.092) TCGA-96-7545-01 14 34270056 34270056 C T NPAS3 Missense_Mutation p.A848V 0.50 deleterious_low_confidence(0.01) benign(0.045) TCGA-96-7545-01 14 47389277 47389277 A G MDGA2 Missense_Mutation p.W726R 0.25 deleterious(0) probably_damaging(0.931) TCGA-96-7545-01 14 58047972 58047972 A T SLC35F4 Missense_Mutation p.L292Q 0.14 deleterious(0) probably_damaging(1) TCGA-96-7545-01 14 75528409 75528409 A T ACYP1 Intron 0.12 TCGA-96-7545-01 15 24921539 24921539 G A NPAP1 Silent p.E175E 0.39 TCGA-96-7545-01 15 75772251 75772251 T A PTPN9 Missense_Mutation p.D356V 0.38 deleterious(0) possibly_damaging(0.9) TCGA-96-7545-01 15 89754980 89754980 C T RLBP1 Missense_Mutation p.M226I 0.31 tolerated(0.49) possibly_damaging(0.79) TCGA-96-7545-01 16 2815095 2815095 A - SRRM2 Frame_Shift_Del p.V1523Lfs*25 0.09 TCGA-96-7545-01 16 3794898 3794898 T A CREBBP Nonsense_Mutation p.K1327* 0.22 TCGA-96-7545-01 16 48180237 48180237 G C ABCC12 Missense_Mutation p.I33M 0.17 deleterious(0.03) benign(0.283) TCGA-96-7545-01 16 67304640 67304640 G A SLC9A5 Splice_Site p.X740_splice 0.29 TCGA-96-7545-01 16 69481076 69481076 G T CYB5B Silent p.L66L 0.09 TCGA-96-7545-01 16 81155300 81155300 G T PKD1L2 RNA 0.20 TCGA-96-7545-01 16 9862740 9862740 C A GRIN2A Missense_Mutation p.D855Y 0.09 deleterious(0) probably_damaging(0.952) TCGA-96-7545-01 17 10263278 10263278 T C MYH13 Missense_Mutation p.Q215R 0.05 tolerated(0.09) probably_damaging(0.978) TCGA-96-7545-01 17 15162456 15162456 A G PMP22 Missense_Mutation p.S45P 0.14 tolerated(0.21) benign(0.006) TCGA-96-7545-01 17 16068456 16068456 T A NCOR1 Missense_Mutation p.K152I 0.04 probably_damaging(0.986) TCGA-96-7545-01 17 27038733 27038733 G C PROCA1 5'UTR 0.30 TCGA-96-7545-01 17 27052403 27052403 C T TLCD1 Silent p.G93G 0.10 TCGA-96-7545-01 17 35348094 35348094 G A AATF Missense_Mutation p.A446T 0.18 tolerated(0.09) benign(0.066) TCGA-96-7545-01 17 41020603 41020603 C T AOC4P RNA 0.23 TCGA-96-7545-01 17 42267903 42267905 CTG - TMUB2 In_Frame_Del p.L213del 0.11 TCGA-96-7545-01 17 58012644 58012644 A G RPS6KB1 Missense_Mutation p.R321G 0.24 deleterious(0) probably_damaging(0.96) TCGA-96-7545-01 17 7577082 7577082 C T TP53 Missense_Mutation p.E286K 0.29 deleterious(0) probably_damaging(0.982) TCGA-96-7545-01 17 76122886 76122886 C T TMC6 Missense_Mutation p.D10N 0.31 tolerated(0.73) benign(0.002) TCGA-96-7545-01 18 43502368 43502368 C T EPG5 Missense_Mutation p.V1013M 0.13 deleterious(0) probably_damaging(0.986) TCGA-96-7545-01 18 6942055 6942055 C A LAMA1 3'UTR 0.21 TCGA-96-7545-01 18 77918312 77918312 C T PARD6G Missense_Mutation p.R158Q 0.18 deleterious(0) probably_damaging(0.998) TCGA-96-7545-01 19 15562679 15562679 G T RASAL3 Missense_Mutation p.S988Y 0.15 tolerated_low_confidence(0.99) benign(0.035) TCGA-96-7545-01 19 19656345 19656345 G T CILP2 Silent p.G997G 0.24 TCGA-96-7545-01 19 22155033 22155033 G A ZNF208 Missense_Mutation p.H935Y 0.15 deleterious(0) unknown(0) TCGA-96-7545-01 19 22785404 22785404 G T AC011467.1 5'Flank 0.18 TCGA-96-7545-01 19 37440574 37440574 A C ZNF568 Missense_Mutation p.Q173H 0.16 tolerated(0.22) benign(0.36) TCGA-96-7545-01 19 44932748 44932748 G A ZNF229 Silent p.G736G 0.26 TCGA-96-7545-01 19 5832215 5832215 G T FUT6 Missense_Mutation p.R122S 0.18 tolerated(0.35) benign(0.007) TCGA-96-7545-01 19 9085578 9085578 C G MUC16 Silent p.G2079G 0.23 TCGA-96-7545-01 1 110765949 110765949 G A KCNC4 Missense_Mutation p.V348M 0.25 tolerated(0.1) probably_damaging(0.999) TCGA-96-7545-01 1 152060002 152060002 A G TCHHL1 Silent p.A52A 0.11 TCGA-96-7545-01 1 152192154 152192154 G T HRNR Missense_Mutation p.Q651K 0.16 unknown(0) TCGA-96-7545-01 1 153945869 153945869 C G CREB3L4 Missense_Mutation p.Q276E 0.14 deleterious(0) probably_damaging(0.999) TCGA-96-7545-01 1 154918566 154918566 C A PBXIP1 Silent p.G528G 0.15 TCGA-96-7545-01 1 155030607 155030607 G T ADAM15 Missense_Mutation p.G566V 0.08 deleterious(0) probably_damaging(1) TCGA-96-7545-01 1 155294338 155294338 G A RUSC1 Intron 0.16 TCGA-96-7545-01 1 156905823 156905823 G A ARHGEF11 Missense_Mutation p.T1553I 0.14 tolerated_low_confidence(0.08) benign(0.03) TCGA-96-7545-01 1 169292458 169292458 C A NME7 Missense_Mutation p.D59Y 0.15 deleterious(0) probably_damaging(0.914) TCGA-96-7545-01 1 19578024 19578024 C T EMC1 5'UTR 0.22 TCGA-96-7545-01 1 197889122 197889122 G A LHX9 Silent p.P65P 0.17 TCGA-96-7545-01 1 201465365 201465365 C T CSRP1 Missense_Mutation p.V23I 0.17 tolerated(0.34) benign(0.02) TCGA-96-7545-01 1 240370390 240370390 G C FMN2 Missense_Mutation p.V760L 0.17 unknown(0) TCGA-96-7545-01 1 244724402 244724402 C T C1orf101 Silent p.L488L 0.14 TCGA-96-7545-01 1 6741067 6741070 GGTA - DNAJC11 Frame_Shift_Del p.Y34Gfs*99 0.25 TCGA-96-7545-01 1 70339235 70339235 T A LRRC7 Intron 0.13 TCGA-96-7545-01 20 31590444 31590444 G A SUN5 Missense_Mutation p.R54C 0.12 deleterious(0.04) possibly_damaging(0.507) TCGA-96-7545-01 20 31805185 31805185 C G BPIFA3 5'UTR 0.38 TCGA-96-7545-01 20 36974999 36975000 - C LBP Frame_Shift_Ins p.G29Rfs*25 0.15 TCGA-96-7545-01 22 18606994 18606994 G T TUBA8 Missense_Mutation p.A100S 0.29 deleterious_low_confidence(0.03) probably_damaging(0.997) TCGA-96-7545-01 22 24658473 24658473 C A POM121L9P RNA 0.15 TCGA-96-7545-01 22 25023454 25023454 C A GGT1 Missense_Mutation p.S359Y 0.18 deleterious(0.01) possibly_damaging(0.77) TCGA-96-7545-01 22 38240311 38240311 C A ANKRD54 5'UTR 0.27 TCGA-96-7545-01 22 50900146 50900153 GGCTGCTC - SBF1 Splice_Site p.X882_splice 0.29 TCGA-96-7545-01 2 100916320 100916320 G C LONRF2 Missense_Mutation p.L376V 0.20 tolerated(0.22) benign(0.192) TCGA-96-7545-01 2 154801105 154801105 A G GALNT13 Missense_Mutation p.N32S 0.19 tolerated(0.26) benign(0.04) TCGA-96-7545-01 2 178098944 178098944 C T NFE2L2 Missense_Mutation p.R34Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-96-7545-01 2 179585299 179585299 T C TTN Silent p.P7730P 0.25 TCGA-96-7545-01 2 179616695 179616695 T C TTN Intron 0.21 TCGA-96-7545-01 2 196741365 196741365 G C DNAH7 Nonsense_Mutation p.S2007* 0.14 TCGA-96-7545-01 2 198285835 198285835 G A SF3B1 Missense_Mutation p.S73F 0.23 tolerated(0.07) benign(0.001) TCGA-96-7545-01 2 21228752 21228752 C T APOB Missense_Mutation p.G3663E 0.23 probably_damaging(0.978) TCGA-96-7545-01 2 38298449 38298449 G C CYP1B1 Missense_Mutation p.P350A 0.10 deleterious(0.01) possibly_damaging(0.735) TCGA-96-7545-01 2 72362028 72362028 C A CYP26B1 Missense_Mutation p.Q241H 0.40 deleterious(0.02) benign(0.005) TCGA-96-7545-01 2 77746747 77746747 C A LRRTM4 Missense_Mutation p.G83V 0.25 deleterious(0.01) probably_damaging(0.966) TCGA-96-7545-01 2 90121844 90121844 G C IGKV1D-17 Missense_Mutation p.R21T 0.14 tolerated(0.08) benign(0.119) TCGA-96-7545-01 2 96260166 96260166 C A TRIM43 Missense_Mutation p.A132E 0.18 deleterious(0) probably_damaging(0.991) TCGA-96-7545-01 2 96691752 96691752 G A GPAT2 Silent p.I388I 0.22 TCGA-96-7545-01 3 100035009 100035009 G A TBC1D23 Silent p.G555G 0.17 TCGA-96-7545-01 3 110837699 110837699 A G PVRL3 Silent p.L233L 0.19 TCGA-96-7545-01 3 123452792 123452792 T C MYLK Missense_Mutation p.R351G 0.24 deleterious(0.01) benign(0.001) TCGA-96-7545-01 3 1369219 1369219 G T CNTN6 Missense_Mutation p.A388S 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-96-7545-01 3 164907308 164907308 C A SLITRK3 Missense_Mutation p.L437F 0.09 deleterious(0) probably_damaging(0.993) TCGA-96-7545-01 3 164907564 164907564 T C SLITRK3 Missense_Mutation p.Y352C 0.28 tolerated(0.13) possibly_damaging(0.818) TCGA-96-7545-01 3 89259590 89259590 G T EPHA3 Missense_Mutation p.S245I 0.19 deleterious(0) probably_damaging(0.981) TCGA-96-7545-01 3 89462335 89462335 G A EPHA3 Missense_Mutation p.E603K 0.21 deleterious(0.01) benign(0.001) TCGA-96-7545-01 4 109670502 109670502 G T ETNPPL Silent p.I273I 0.18 TCGA-96-7545-01 4 154504733 154504733 A G KIAA0922 Silent p.S323S 0.28 TCGA-96-7545-01 4 187584769 187584769 T C FAT1 Splice_Site p.X1089_splice 0.26 TCGA-96-7545-01 4 41015643 41015643 C A APBB2 Silent p.T264T 0.21 TCGA-96-7545-01 4 41747956 41747956 T G PHOX2B Missense_Mutation p.Q271H 0.26 deleterious_low_confidence(0.01) unknown(0) TCGA-96-7545-01 4 6107573 6107573 A T JAKMIP1 Missense_Mutation p.L84Q 0.23 deleterious(0) probably_damaging(0.942) TCGA-96-7545-01 4 99407980 99407980 C A TSPAN5 Missense_Mutation p.W63L 0.19 tolerated(0.36) benign(0.012) TCGA-96-7545-01 5 13766248 13766248 C - DNAH5 Frame_Shift_Del p.G3313Afs*25 0.10 TCGA-96-7545-01 5 140750030 140750030 T C PCDHGB3 Silent p.S23S 0.25 TCGA-96-7545-01 5 1422076 1422076 G A SLC6A3 Missense_Mutation p.P236L 0.16 tolerated(0.87) benign(0.258) TCGA-96-7545-01 5 41065516 41065516 T C MROH2B Missense_Mutation p.Y93C 0.32 deleterious(0.01) possibly_damaging(0.753) TCGA-96-7545-01 5 483519 483519 G A SLC9A3 Silent p.Y337Y 0.27 TCGA-96-7545-01 5 78328507 78328507 C A DMGDH Intron 0.18 TCGA-96-7545-01 6 119509721 119509721 G C MAN1A1 Missense_Mutation p.A523G 0.10 deleterious(0.02) probably_damaging(0.941) TCGA-96-7545-01 6 125619905 125619905 T A HDDC2 Silent p.A88A 0.25 TCGA-96-7545-01 6 126176371 126176371 A T NCOA7 Nonsense_Mutation p.R86* 0.22 TCGA-96-7545-01 6 129794391 129794391 C T LAMA2 Nonsense_Mutation p.Q2445* 0.12 TCGA-96-7545-01 6 132910089 132910089 T G TAAR5 Missense_Mutation p.H246P 0.20 deleterious(0) benign(0.187) TCGA-96-7545-01 6 148664279 148664279 G T SASH1 Nonsense_Mutation p.E26* 0.24 TCGA-96-7545-01 6 25850340 25850340 C A SLC17A3 Silent p.L353L 0.26 TCGA-96-7545-01 6 28053512 28053512 A C ZNF165 Missense_Mutation p.K85T 0.38 deleterious(0) probably_damaging(0.997) TCGA-96-7545-01 6 28057128 28057128 C T ZNF165 Silent p.H446H 0.20 TCGA-96-7545-01 6 30856491 30856491 C G DDR1 5'UTR 0.24 TCGA-96-7545-01 6 83900608 83900608 T C PGM3 Missense_Mutation p.M70V 0.16 tolerated(0.76) probably_damaging(0.999) TCGA-96-7545-01 6 96651480 96651480 A G FUT9 Missense_Mutation p.H150R 0.07 tolerated(0.2) benign(0.326) TCGA-96-7545-01 6 97676786 97676786 C G MMS22L Missense_Mutation p.V675L 0.23 tolerated(0.06) benign(0.009) TCGA-96-7545-01 7 154667755 154667755 G A DPP6 Missense_Mutation p.E675K 0.17 tolerated(0.2) benign(0.076) TCGA-96-7545-01 7 27150075 27150075 G A HOXA3 Missense_Mutation p.P62L 0.27 tolerated(0.48) probably_damaging(0.927) TCGA-96-7545-01 7 66548435 66548435 G A TYW1 Silent p.V431V 0.19 TCGA-96-7545-01 7 66767802 66767802 C T STAG3L4 RNA 0.25 TCGA-96-7545-01 7 94539601 94539601 A G PPP1R9A Missense_Mutation p.Y59C 0.20 deleterious(0) probably_damaging(1) TCGA-96-7545-01 7 98560051 98560051 G A TRRAP Splice_Site p.X2270_splice 0.25 TCGA-96-7545-01 8 13959889 13959889 C A SGCZ Missense_Mutation p.G247V 0.26 deleterious(0) probably_damaging(1) TCGA-96-7545-01 8 18080099 18080099 A G NAT1 Silent p.L243L 0.35 TCGA-96-7545-01 8 63659627 63659627 G A NKAIN3 Missense_Mutation p.G137D 0.20 tolerated(0.13) benign(0.369) TCGA-96-7545-01 8 70744251 70744251 G A SLCO5A1 Missense_Mutation p.P220S 0.24 deleterious(0.05) benign(0.349) TCGA-96-7545-01 8 77766997 77766997 C A ZFHX4 Missense_Mutation p.P2614T 0.25 probably_damaging(0.996) TCGA-96-7545-01 9 121929786 121929786 C A BRINP1 Missense_Mutation p.S621I 0.13 deleterious(0.01) probably_damaging(0.944) TCGA-96-7545-01 9 123716080 123716080 T A C5 Missense_Mutation p.E1610V 0.16 tolerated(0.08) benign(0.392) TCGA-96-7545-01 9 21971108 21971108 C T CDKN2A Missense_Mutation p.D84N 0.17 deleterious(0) probably_damaging(1) TCGA-96-7545-01 9 99580528 99580528 C T ZNF782 Missense_Mutation p.E593K 0.23 tolerated(0.2) benign(0.167) TCGA-96-7545-01 X 144909472 144909472 A G TMEM257 Missense_Mutation p.R93G 0.34 tolerated_low_confidence(0.05) benign(0.011) TCGA-96-7545-01 X 67454426 67454426 C T OPHN1 Missense_Mutation p.R130Q 0.38 tolerated(0.31) possibly_damaging(0.605) TCGA-96-8169-01 10 108924032 108924032 G A SORCS1 Nonsense_Mutation p.R85* 0.27 TCGA-96-8169-01 10 117040994 117040994 C A ATRNL1 Missense_Mutation p.P744T 0.26 deleterious(0) probably_damaging(0.948) TCGA-96-8169-01 10 117040995 117040995 C A ATRNL1 Missense_Mutation p.P744Q 0.26 deleterious(0) probably_damaging(0.983) TCGA-96-8169-01 10 134884471 134884471 A T GPR123 Missense_Mutation p.R13S 0.17 deleterious_low_confidence(0) benign(0.402) TCGA-96-8169-01 10 15688951 15688951 G A ITGA8 Silent p.S367S 0.15 TCGA-96-8169-01 10 28378772 28378772 T A MPP7 Splice_Site p.X318_splice 0.29 TCGA-96-8169-01 10 31138149 31138149 T G ZNF438 Silent p.A395A 0.19 TCGA-96-8169-01 10 50714017 50714017 A G ERCC6 Missense_Mutation p.L480P 0.13 tolerated(0.27) benign(0.003) TCGA-96-8169-01 10 68857364 68857364 T C LRRTM3 Missense_Mutation p.V519A 0.18 tolerated_low_confidence(0.45) benign(0.003) TCGA-96-8169-01 10 75113491 75113491 T C TTC18 Missense_Mutation p.K25E 0.21 deleterious(0) probably_damaging(0.991) TCGA-96-8169-01 10 8100694 8100694 C T GATA3 Missense_Mutation p.P223L 0.24 deleterious(0) probably_damaging(0.929) TCGA-96-8169-01 10 95276942 95276942 G A CEP55 Silent p.E310E 0.16 TCGA-96-8169-01 11 100168381 100168381 T C CNTN5 Missense_Mutation p.V780A 0.30 deleterious(0) probably_damaging(0.969) TCGA-96-8169-01 11 105948363 105948363 G - AASDHPPT 5'UTR 0.45 TCGA-96-8169-01 11 113704991 113704991 C A USP28 Nonsense_Mutation p.E201* 0.27 TCGA-96-8169-01 11 118498257 118498257 G A PHLDB1 Missense_Mutation p.G240S 0.43 tolerated(0.21) possibly_damaging(0.465) TCGA-96-8169-01 11 118925334 118925334 C A HYOU1 Nonsense_Mutation p.E184* 0.11 TCGA-96-8169-01 11 134214956 134214956 G T GLB1L2 Missense_Mutation p.G128W 0.39 deleterious(0) probably_damaging(0.999) TCGA-96-8169-01 11 18361177 18361177 G C GTF2H1 Missense_Mutation p.E194Q 0.14 tolerated(0.15) benign(0.063) TCGA-96-8169-01 11 20959392 20959392 G T NELL1 Missense_Mutation p.C353F 0.20 deleterious(0.02) benign(0.197) TCGA-96-8169-01 11 21594734 21594734 G A NELL1 Missense_Mutation p.G721R 0.23 deleterious(0) probably_damaging(0.998) TCGA-96-8169-01 11 55657486 55657486 G T TRIM51 Missense_Mutation p.G277V 0.08 deleterious(0) benign(0.114) TCGA-96-8169-01 11 57996149 57996149 G T OR10Q1 Missense_Mutation p.L67M 0.15 deleterious(0) probably_damaging(0.999) TCGA-96-8169-01 11 6592085 6592085 G A DNHD1 Missense_Mutation p.R4448Q 0.14 benign(0.041) TCGA-96-8169-01 11 67075202 67075202 C G SSH3 Missense_Mutation p.P262R 0.13 tolerated(0.22) benign(0.006) TCGA-96-8169-01 11 70189821 70189821 G T PPFIA1 Missense_Mutation p.S585I 0.03 tolerated(0.08) benign(0.22) TCGA-96-8169-01 11 7064318 7064318 G T NLRP14 Missense_Mutation p.S354I 0.28 tolerated(0.11) benign(0.282) TCGA-96-8169-01 12 106827641 106827641 G A POLR3B Missense_Mutation p.R591K 0.21 deleterious(0) probably_damaging(1) TCGA-96-8169-01 12 110032875 110032875 G A MVK Missense_Mutation p.V310M 0.25 deleterious(0.04) probably_damaging(0.969) TCGA-96-8169-01 12 111729241 111729241 G A CUX2 Silent p.E107E 0.19 TCGA-96-8169-01 12 130184846 130184846 G C TMEM132D Silent p.R159R 0.09 TCGA-96-8169-01 12 40748137 40748137 G C LRRK2 Missense_Mutation p.V2205L 0.12 deleterious(0.01) benign(0.309) TCGA-96-8169-01 12 4854714 4854714 T A GALNT8 Missense_Mutation p.F327Y 0.13 tolerated(0.18) probably_damaging(0.974) TCGA-96-8169-01 12 49431891 49431895 TCCCG - KMT2D Frame_Shift_Del p.R3082Gfs*14 0.16 TCGA-96-8169-01 12 52941731 52941731 C T KRT71 Silent p.G338G 0.17 TCGA-96-8169-01 12 52967294 52967294 C A KRT74 Missense_Mutation p.A90S 0.05 tolerated(0.1) benign(0.354) TCGA-96-8169-01 12 57573295 57573295 G A LRP1 Missense_Mutation p.R1641Q 0.20 probably_damaging(0.999) TCGA-96-8169-01 12 57922243 57922243 C G MBD6 Missense_Mutation p.P907R 0.14 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-96-8169-01 12 58114705 58114705 A C OS9 3'UTR 0.12 TCGA-96-8169-01 12 85438517 85438517 C G LRRIQ1 Missense_Mutation p.S89C 0.15 deleterious(0) probably_damaging(0.935) TCGA-96-8169-01 13 25744148 25744148 G T AMER2 Nonsense_Mutation p.S537* 0.29 TCGA-96-8169-01 13 39263696 39263696 C T FREM2 Missense_Mutation p.R739C 0.20 tolerated(0.07) benign(0.394) TCGA-96-8169-01 14 104618399 104618399 G A KIF26A Silent p.G112G 0.23 TCGA-96-8169-01 14 105618019 105618019 G A JAG2 Missense_Mutation p.P366L 0.15 deleterious(0.01) benign(0.01) TCGA-96-8169-01 14 20248505 20248505 G A OR4M1 Silent p.K8K 0.13 TCGA-96-8169-01 14 23380599 23380599 C A RBM23 Missense_Mutation p.A2S 0.27 tolerated_low_confidence(0.1) possibly_damaging(0.739) TCGA-96-8169-01 14 45564524 45564524 C G PRPF39 Missense_Mutation p.P28A 0.18 tolerated_low_confidence(0.76) benign(0) TCGA-96-8169-01 15 40631023 40631023 C T C15orf52 Missense_Mutation p.A149T 0.21 tolerated(0.25) benign(0.037) TCGA-96-8169-01 15 80460436 80460436 C T FAH Silent p.V166V 0.17 TCGA-96-8169-01 15 82336091 82336091 G A MEX3B Missense_Mutation p.P374S 0.25 tolerated(0.48) unknown(0) TCGA-96-8169-01 16 1793359 1793359 A T MAPK8IP3 Missense_Mutation p.N209I 0.05 deleterious(0) benign(0.105) TCGA-96-8169-01 16 19580840 19580840 G C C16orf62 Missense_Mutation p.S160T 0.17 tolerated(0.27) benign(0.215) TCGA-96-8169-01 16 20492250 20492250 G T ACSM2A Intron 0.24 TCGA-96-8169-01 16 72828428 72828428 G T ZFHX3 Missense_Mutation p.A2718E 0.23 unknown(0) TCGA-96-8169-01 17 10204943 10204943 G A MYH13 Silent p.D1915D 0.04 TCGA-96-8169-01 17 39150270 39150270 C A KRTAP3-3 Missense_Mutation p.R27L 0.36 tolerated_low_confidence(0.1) possibly_damaging(0.823) TCGA-96-8169-01 17 48677021 48677021 T C CACNA1G Missense_Mutation p.L1164P 0.36 tolerated(0.12) benign(0.303) TCGA-96-8169-01 17 63221437 63221437 G C RGS9 Missense_Mutation p.K575N 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.719) TCGA-96-8169-01 17 7189258 7189258 G A SLC2A4 Intron 0.33 TCGA-96-8169-01 17 7576897 7576897 G A TP53 Nonsense_Mutation p.Q317* 0.60 TCGA-96-8169-01 17 78055404 78055404 T C CCDC40 Missense_Mutation p.I541T 0.36 deleterious(0) probably_damaging(0.927) TCGA-96-8169-01 18 22804784 22804784 A - ZNF521 Frame_Shift_Del p.L1033Wfs*49 0.19 TCGA-96-8169-01 18 46284731 46284731 G T CTIF Silent p.L342L 0.22 TCGA-96-8169-01 18 50866206 50866206 G A DCC Missense_Mutation p.G763D 0.27 deleterious(0) probably_damaging(1) TCGA-96-8169-01 18 55862888 55862888 G A NEDD4L Intron 0.08 TCGA-96-8169-01 18 8638327 8638327 A G RAB12 3'UTR 0.44 TCGA-96-8169-01 18 9944983 9944983 T A VAPA Silent p.V160V 0.42 TCGA-96-8169-01 19 14829544 14829544 G A ZNF333 Missense_Mutation p.V469M 0.31 tolerated(0.4) possibly_damaging(0.867) TCGA-96-8169-01 19 16552790 16552790 G A EPS15L1 Silent p.V26V 0.27 TCGA-96-8169-01 19 17664434 17664434 A G FAM129C 3'UTR 0.25 TCGA-96-8169-01 19 18979496 18979496 C T GDF1 Silent p.S343S 0.33 TCGA-96-8169-01 19 1913069 1913069 A G ADAT3 Silent p.A341A 0.31 TCGA-96-8169-01 19 22155264 22155264 C G ZNF208 Missense_Mutation p.E858Q 0.17 deleterious(0) unknown(0) TCGA-96-8169-01 19 39125761 39125761 G C EIF3K Intron 0.17 TCGA-96-8169-01 19 39521752 39521752 C T FBXO27 Silent p.K163K 0.18 TCGA-96-8169-01 19 44242351 44242351 T C SMG9 Missense_Mutation p.I278V 0.15 tolerated(0.72) benign(0.03) TCGA-96-8169-01 19 46733716 46733716 A - IGFL1 Frame_Shift_Del p.K89Sfs*2 0.17 TCGA-96-8169-01 19 52133121 52133121 C A SIGLEC5 Missense_Mutation p.S129I 0.12 tolerated(0.06) benign(0.298) TCGA-96-8169-01 19 52825294 52825294 G T ZNF480 Missense_Mutation p.C264F 0.24 deleterious(0) probably_damaging(0.999) TCGA-96-8169-01 19 53856602 53856602 T C ZNF845 Missense_Mutation p.C892R 0.20 deleterious(0) benign(0.1) TCGA-96-8169-01 19 57326616 57326616 C A PEG3 Missense_Mutation p.G1065V 0.17 tolerated(0.06) probably_damaging(0.994) TCGA-96-8169-01 19 57802841 57802841 G T ZNF460 Missense_Mutation p.S311I 0.24 tolerated(0.07) possibly_damaging(0.516) TCGA-96-8169-01 19 58571379 58571379 T C ZNF135 Intron 0.10 TCGA-96-8169-01 19 7810586 7810586 T A CD209 Missense_Mutation p.Q189L 0.13 tolerated(0.39) benign(0) TCGA-96-8169-01 19 7810587 7810587 G T CD209 Missense_Mutation p.Q189K 0.14 tolerated(0.22) benign(0.002) TCGA-96-8169-01 1 103480076 103480076 C T COL11A1 Silent p.Q521Q 0.16 TCGA-96-8169-01 1 111060431 111060431 T G KCNA10 Missense_Mutation p.T327P 0.05 tolerated(0.43) benign(0.013) TCGA-96-8169-01 1 12837355 12837355 A T PRAMEF12 Missense_Mutation p.L355F 0.22 deleterious(0.03) probably_damaging(0.986) TCGA-96-8169-01 1 152552161 152552161 G T LCE3D Nonsense_Mutation p.C84* 0.35 TCGA-96-8169-01 1 155734890 155734890 T A GON4L Missense_Mutation p.E1458D 0.05 tolerated(0.09) possibly_damaging(0.801) TCGA-96-8169-01 1 158817551 158817551 A G MNDA Missense_Mutation p.I341V 0.19 deleterious(0.01) probably_damaging(0.994) TCGA-96-8169-01 1 167096791 167096791 C A DUSP27 Missense_Mutation p.P808H 0.19 tolerated(0.05) benign(0.17) TCGA-96-8169-01 1 169586648 169586648 T C SELP Silent p.L33L 0.16 TCGA-96-8169-01 1 175046732 175046732 G T TNN Missense_Mutation p.A60S 0.36 tolerated(0.15) benign(0.333) TCGA-96-8169-01 1 177199177 177199177 G T BRINP2 Silent p.L55L 0.17 TCGA-96-8169-01 1 181021456 181021456 A T MR1 Silent p.P230P 0.17 TCGA-96-8169-01 1 19166261 19166261 G T TAS1R2 Missense_Mutation p.S784R 0.16 tolerated(0.3) benign(0.03) TCGA-96-8169-01 1 202705421 202705421 G A KDM5B Silent p.L1062L 0.19 TCGA-96-8169-01 1 214706290 214706290 C A PTPN14 Intron 0.15 TCGA-96-8169-01 1 227068414 227068414 G T PSEN2 Intron 0.23 TCGA-96-8169-01 1 229567487 229567487 G T ACTA1 Missense_Mutation p.P324H 0.35 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-96-8169-01 1 237729950 237729950 C G RYR2 Missense_Mutation p.R1100G 0.32 benign(0.091) TCGA-96-8169-01 1 243362463 243362463 T C CEP170 Missense_Mutation p.Y177C 0.11 deleterious(0.01) possibly_damaging(0.836) TCGA-96-8169-01 1 243589855 243589855 G A SDCCAG8 Silent p.K660K 0.26 TCGA-96-8169-01 1 248020626 248020626 G T TRIM58 Silent p.P26P 0.21 TCGA-96-8169-01 1 248224298 248224298 A T OR2L3 Silent p.A105A 0.19 TCGA-96-8169-01 1 248263294 248263294 T G OR2L13 Missense_Mutation p.L206R 0.18 deleterious(0) probably_damaging(0.994) TCGA-96-8169-01 1 32797106 32797106 T C HDAC1 Silent p.F337F 0.24 TCGA-96-8169-01 1 3328849 3328849 C T PRDM16 Silent p.I696I 0.16 TCGA-96-8169-01 1 41304249 41304249 G A KCNQ4 3'UTR 0.14 TCGA-96-8169-01 1 66828875 66828875 G T PDE4B Missense_Mutation p.G349C 0.18 deleterious(0.01) probably_damaging(1) TCGA-96-8169-01 1 67666454 67666454 T A IL23R Missense_Mutation p.S176T 0.18 tolerated(0.1) possibly_damaging(0.682) TCGA-96-8169-01 1 70904503 70904503 G A CTH Silent p.K395K 0.10 TCGA-96-8169-01 1 71512538 71512538 C A PTGER3 Silent p.A241A 0.22 TCGA-96-8169-01 1 78201760 78201760 T G USP33 Missense_Mutation p.E176D 0.26 tolerated(0.69) benign(0.012) TCGA-96-8169-01 1 91405178 91405178 C A ZNF644 Missense_Mutation p.G578V 0.17 tolerated(0.14) benign(0.272) TCGA-96-8169-01 20 18131545 18131545 T C CSRP2BP Silent p.C153C 0.06 TCGA-96-8169-01 20 62737923 62737923 C A NPBWR2 Missense_Mutation p.A88S 0.12 deleterious(0.02) possibly_damaging(0.759) TCGA-96-8169-01 20 9370601 9370601 T C PLCB4 Missense_Mutation p.C412R 0.13 deleterious(0) probably_damaging(0.991) TCGA-96-8169-01 21 31965000 31965000 G T KRTAP6-3 Missense_Mutation p.G72V 0.15 unknown(0) TCGA-96-8169-01 22 36651002 36651002 A T APOL1 Missense_Mutation p.M17L 0.25 tolerated_low_confidence(0.32) benign(0) TCGA-96-8169-01 2 102968070 102968070 C A IL1RL1 Missense_Mutation p.H454N 0.21 tolerated(0.6) benign(0.132) TCGA-96-8169-01 2 132240268 132240268 C A TUBA3D Silent p.A400A 0.16 TCGA-96-8169-01 2 132558610 132558610 C G C2orf27B 5'UTR 0.31 TCGA-96-8169-01 2 136570220 136570220 G A LCT Nonsense_Mutation p.Q672* 0.29 TCGA-96-8169-01 2 140990749 140990749 C T LRP1B 3'UTR 0.15 TCGA-96-8169-01 2 152589651 152589651 T C NEB Missense_Mutation p.Y7C 0.36 unknown(0) TCGA-96-8169-01 2 179594963 179594963 C A TTN Missense_Mutation p.G6055V 0.12 TCGA-96-8169-01 2 210558175 210558175 C T MAP2 Silent p.T427T 0.23 TCGA-96-8169-01 2 21225717 21225717 G C APOB Missense_Mutation p.L4193V 0.22 benign(0.003) TCGA-96-8169-01 2 215813765 215813765 C T ABCA12 Missense_Mutation p.G2321R 0.18 deleterious(0) probably_damaging(0.998) TCGA-96-8169-01 2 228419151 228419151 G T AGFG1 Splice_Site p.X566_splice 0.17 TCGA-96-8169-01 2 237489792 237489792 C T ACKR3 Silent p.I228I 0.08 TCGA-96-8169-01 2 27886850 27886850 A G SLC4A1AP Silent p.P77P 0.15 TCGA-96-8169-01 2 45645528 45645528 T C SRBD1 Missense_Mutation p.Q770R 0.16 tolerated(0.09) benign(0.141) TCGA-96-8169-01 2 73491556 73491556 C G FBXO41 Missense_Mutation p.K552N 0.23 deleterious(0) possibly_damaging(0.553) TCGA-96-8169-01 2 89986368 89986368 A T IGKV2D-29 Missense_Mutation p.Q6L 0.21 deleterious(0.04) benign(0.168) TCGA-96-8169-01 3 113323796 113323796 G C SIDT1 Silent p.V459V 0.35 TCGA-96-8169-01 3 113955030 113955030 T C ZNF80 3'UTR 0.09 TCGA-96-8169-01 3 119624631 119624631 C T GSK3B Missense_Mutation p.G262S 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-96-8169-01 3 121643196 121643196 A G SLC15A2 Splice_Site p.X335_splice 0.12 TCGA-96-8169-01 3 131442359 131442359 G A CPNE4 Silent p.D97D 0.17 TCGA-96-8169-01 3 158538092 158538092 G A MFSD1 Silent p.V329V 0.12 TCGA-96-8169-01 3 159482397 159482397 T A IQCJ-SCHIP1 Missense_Mutation p.Y153N 0.33 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-96-8169-01 3 164737476 164737477 - AT SI Frame_Shift_Ins p.G1113Mfs*15 0.09 TCGA-96-8169-01 3 167761226 167761226 T C GOLIM4 Missense_Mutation p.H153R 0.15 deleterious(0.01) probably_damaging(1) TCGA-96-8169-01 3 183665166 183665166 C A ABCC5 Missense_Mutation p.M1120I 0.13 tolerated(0.09) benign(0.039) TCGA-96-8169-01 3 195711476 195711476 C T SDHAP1 RNA 0.11 TCGA-96-8169-01 3 197723055 197723055 C T LMLN Nonsense_Mutation p.R353* 0.22 TCGA-96-8169-01 3 52941630 52941630 C T SFMBT1 Missense_Mutation p.V676I 0.14 deleterious(0.04) benign(0.022) TCGA-96-8169-01 3 98518483 98518483 C A DCBLD2 Silent p.G687G 0.36 TCGA-96-8169-01 3 99891169 99891169 C T CMSS1 Nonsense_Mutation p.Q197* 0.13 TCGA-96-8169-01 4 165961410 165961410 C A TRIM60 Nonsense_Mutation p.Y62* 0.14 TCGA-96-8169-01 4 165961411 165961411 A G TRIM60 Missense_Mutation p.K63E 0.13 deleterious(0.03) benign(0.169) TCGA-96-8169-01 4 46390818 46390818 T A GABRA2 Intron 0.26 TCGA-96-8169-01 4 55598075 55598075 G T KIT Nonsense_Mutation p.E758* 0.07 TCGA-96-8169-01 4 55598078 55598078 G A KIT Missense_Mutation p.D759N 0.07 deleterious(0.02) possibly_damaging(0.739) TCGA-96-8169-01 4 62813905 62813905 C G LPHN3 Missense_Mutation p.R838G 0.21 deleterious(0) probably_damaging(0.998) TCGA-96-8169-01 4 6303403 6303403 G T WFS1 Silent p.L627L 0.24 TCGA-96-8169-01 4 69816785 69816785 C G UGT2A3 Missense_Mutation p.E232Q 0.06 tolerated(1) benign(0.004) TCGA-96-8169-01 4 77676346 77676346 G C SHROOM3 Splice_Site p.X1570_splice 0.19 TCGA-96-8169-01 4 87749220 87749220 G A SLC10A6 Silent p.I229I 0.14 TCGA-96-8169-01 5 137803667 137803683 TCAGCAGCTTCCCTTCC - EGR1 Frame_Shift_Del p.S512Cfs*24 0.25 TCGA-96-8169-01 5 140745473 140745473 A G PCDHGA5 Missense_Mutation p.R526G 0.12 deleterious_low_confidence(0.01) benign(0.114) TCGA-96-8169-01 5 140798945 140798945 G A PCDHGB7 Missense_Mutation p.V507M 0.04 deleterious(0.03) probably_damaging(0.979) TCGA-96-8169-01 5 149919718 149919718 G T NDST1 Silent p.V547V 0.19 TCGA-96-8169-01 5 168678395 168678395 A T SLIT3 Missense_Mutation p.V89D 0.06 deleterious(0) probably_damaging(0.952) TCGA-96-8169-01 5 24535254 24535254 C A CDH10 Missense_Mutation p.D261Y 0.16 deleterious(0) probably_damaging(0.998) TCGA-96-8169-01 5 26915936 26915936 C A CDH9 Missense_Mutation p.D109Y 0.35 deleterious(0) probably_damaging(1) TCGA-96-8169-01 5 2748751 2748751 G A IRX2 Silent p.A357A 0.21 TCGA-96-8169-01 5 35759699 35759699 G C SPEF2 Missense_Mutation p.K1166N 0.21 deleterious(0.04) probably_damaging(0.946) TCGA-96-8169-01 5 63890597 63890597 C A RGS7BP Missense_Mutation p.T175K 0.24 deleterious_low_confidence(0.01) unknown(0) TCGA-96-8169-01 5 86628323 86628323 G A RASA1 Splice_Site p.X231_splice 0.11 TCGA-96-8169-01 6 100838764 100838764 G T SIM1 Missense_Mutation p.L592M 0.09 tolerated_low_confidence(0.35) probably_damaging(0.959) TCGA-96-8169-01 6 119327734 119327734 C A FAM184A Missense_Mutation p.G565C 0.16 tolerated(0.11) probably_damaging(0.998) TCGA-96-8169-01 6 137814987 137814987 G A OLIG3 Silent p.R107R 0.12 TCGA-96-8169-01 6 139094835 139094835 G C CCDC28A Silent p.A8A 0.18 TCGA-96-8169-01 6 144747459 144747459 C T UTRN Nonsense_Mutation p.Q148* 0.12 TCGA-96-8169-01 6 151671524 151671524 G A AKAP12 Silent p.P666P 0.15 TCGA-96-8169-01 6 153043060 153043060 G T MYCT1 Missense_Mutation p.R127L 0.15 deleterious(0) probably_damaging(0.999) TCGA-96-8169-01 6 161966377 161966377 A T PARK2 Intron 0.25 TCGA-96-8169-01 6 22287567 22287567 A T PRL 3'UTR 0.12 TCGA-96-8169-01 6 26216609 26216609 G C HIST1H2BG Missense_Mutation p.S88W 0.12 deleterious_low_confidence(0.01) benign(0.392) TCGA-96-8169-01 6 27805978 27805978 C A HIST1H2AK Missense_Mutation p.G47V 0.17 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-96-8169-01 6 30523390 30523390 G A GNL1 Missense_Mutation p.R61C 0.17 deleterious(0.01) possibly_damaging(0.856) TCGA-96-8169-01 6 33139582 33139582 G A COL11A2 Nonsense_Mutation p.R934* 0.10 TCGA-96-8169-01 6 33411391 33411391 A T SYNGAP1 Missense_Mutation p.Q1021L 0.23 deleterious(0) probably_damaging(0.997) TCGA-96-8169-01 6 38690896 38690896 C T DNAH8 5'Flank 0.27 TCGA-96-8169-01 6 397149 397149 G A IRF4 Nonsense_Mutation p.W178* 0.18 TCGA-96-8169-01 6 44223054 44223054 C A SLC35B2 Missense_Mutation p.V230L 0.07 deleterious(0.04) benign(0.196) TCGA-96-8169-01 6 47576945 47576945 G A CD2AP Silent p.V573V 0.16 TCGA-96-8169-01 6 85447093 85447093 A G TBX18 Silent p.T378T 0.10 TCGA-96-8169-01 7 100006222 100006222 A T ZCWPW1 Missense_Mutation p.V310E 0.17 deleterious(0) probably_damaging(0.996) TCGA-96-8169-01 7 121684536 121684536 G A PTPRZ1 Missense_Mutation p.V2000M 0.25 deleterious(0) possibly_damaging(0.69) TCGA-96-8169-01 7 127014491 127014491 G C ZNF800 Missense_Mutation p.A300G 0.04 tolerated(0.09) probably_damaging(0.981) TCGA-96-8169-01 7 141952334 141952334 C A PRSS58 Missense_Mutation p.M178I 0.13 deleterious(0) benign(0.34) TCGA-96-8169-01 7 143054009 143054009 G T FAM131B Silent p.L239L 0.19 TCGA-96-8169-01 7 147815265 147815265 T C CNTNAP2 Silent p.S813S 0.20 TCGA-96-8169-01 7 31124986 31124986 G A ADCYAP1R1 Missense_Mutation p.A200T 0.13 deleterious(0.01) probably_damaging(1) TCGA-96-8169-01 7 38402491 38402491 C A TRGV2 Missense_Mutation p.V110F 0.08 deleterious(0.03) benign(0.347) TCGA-96-8169-01 7 38402632 38402632 G C TRGV2 Missense_Mutation p.Q63E 0.13 tolerated(0.07) possibly_damaging(0.703) TCGA-96-8169-01 7 45932622 45932622 A C IGFBP1 Silent p.R238R 0.24 TCGA-96-8169-01 7 91632323 91632323 C T AKAP9 Missense_Mutation p.A1031V 0.06 benign(0.047) TCGA-96-8169-01 7 93555464 93555464 T C GNG11 Missense_Mutation p.L53P 0.17 deleterious(0) probably_damaging(0.997) TCGA-96-8169-01 8 101076009 101076009 C T RGS22 Silent p.Q329Q 0.34 TCGA-96-8169-01 8 22035212 22035212 C T BMP1 Intron 0.26 TCGA-96-8169-01 8 77776438 77776438 C T ZFHX4 Silent p.S3496S 0.11 TCGA-96-8169-01 8 86118444 86118444 A T E2F5 Missense_Mutation p.N180I 0.23 deleterious(0.03) benign(0.101) TCGA-96-8169-01 9 102713518 102713518 T G STX17 Missense_Mutation p.D122E 0.33 tolerated(0.74) benign(0.001) TCGA-96-8169-01 9 104433082 104433082 G T GRIN3A Missense_Mutation p.P538T 0.30 deleterious(0) probably_damaging(0.992) TCGA-96-8169-01 9 139402803 139402803 T C NOTCH1 Missense_Mutation p.K1069R 0.24 tolerated(0.12) probably_damaging(1) TCGA-96-8169-01 9 140458952 140458952 G A DPH7 Missense_Mutation p.H295Y 0.31 tolerated(0.14) benign(0.005) TCGA-96-8169-01 9 35801115 35801115 T G NPR2 Missense_Mutation p.F467C 0.14 deleterious(0) benign(0.022) TCGA-96-8169-01 9 72064673 72064673 C A APBA1 Missense_Mutation p.V670L 0.27 deleterious(0.02) probably_damaging(0.952) TCGA-96-8169-01 X 105011454 105011454 T A IL1RAPL2 Missense_Mutation p.Y621N 0.06 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-96-8169-01 X 12735098 12735098 G A FRMPD4 Silent p.L840L 0.41 TCGA-96-8169-01 X 135582351 135582351 T A HTATSF1 Missense_Mutation p.N134K 0.28 tolerated(0.07) benign(0.168) TCGA-96-8169-01 X 34149268 34149268 G T FAM47A Missense_Mutation p.H376Q 0.23 tolerated(0.26) benign(0.092) TCGA-96-8169-01 X 50085199 50085199 A T CCNB3 Splice_Site p.X1173_splice 0.23 TCGA-96-8169-01 X 591538 591538 G T SHOX 5'UTR 0.38 TCGA-96-8170-01 10 12155024 12155024 A T DHTKD1 Silent p.P760P 0.18 TCGA-96-8170-01 10 124712480 124712480 C A C10orf88 Missense_Mutation p.R78M 0.13 tolerated(0.28) benign(0.005) TCGA-96-8170-01 10 50531752 50531752 A T C10orf71 Nonsense_Mutation p.K388* 0.16 TCGA-96-8170-01 10 5437437 5437437 A G TUBAL3 Silent p.D83D 0.17 TCGA-96-8170-01 10 54528264 54528264 G C MBL2 Missense_Mutation p.T127S 0.21 tolerated(0.47) benign(0.007) TCGA-96-8170-01 10 55698605 55698605 C A PCDH15 Missense_Mutation p.V1115F 0.19 tolerated(0.16) probably_damaging(0.958) TCGA-96-8170-01 10 89711976 89711977 - ATGTTTGGAA PTEN Frame_Shift_Ins p.E201Gfs*4 0.08 TCGA-96-8170-01 10 90122405 90122405 C A RNLS Missense_Mutation p.A202S 0.24 tolerated(0.31) benign(0.026) TCGA-96-8170-01 11 103907480 103907480 C T DDI1 5'UTR 0.20 TCGA-96-8170-01 11 107799300 107799300 G T RAB39A Missense_Mutation p.E2D 0.18 tolerated(0.41) benign(0.05) TCGA-96-8170-01 11 118769176 118769176 C T BCL9L Missense_Mutation p.S1483N 0.13 possibly_damaging(0.629) TCGA-96-8170-01 11 123813595 123813595 C A OR6T1 Missense_Mutation p.R317S 0.09 deleterious(0.02) benign(0) TCGA-96-8170-01 11 124310564 124310564 C A OR8B8 Missense_Mutation p.V140L 0.06 tolerated_low_confidence(0.1) benign(0.053) TCGA-96-8170-01 11 1269293 1269293 C T MUC5B Missense_Mutation p.T3728I 0.07 unknown(0) TCGA-96-8170-01 11 16208440 16208440 G C SOX6 Missense_Mutation p.I199M 0.10 deleterious(0.04) possibly_damaging(0.859) TCGA-96-8170-01 11 17408943 17408943 G A KCNJ11 Silent p.P232P 0.23 TCGA-96-8170-01 11 18111783 18111783 C G SAAL1 Missense_Mutation p.R176S 0.04 tolerated(0.14) benign(0.148) TCGA-96-8170-01 11 18195195 18195195 G C MRGPRX4 Missense_Mutation p.R131P 0.14 deleterious(0) possibly_damaging(0.791) TCGA-96-8170-01 11 47595013 47595013 A G KBTBD4 Silent p.D358D 0.16 TCGA-96-8170-01 11 47754155 47754155 G A FNBP4 Missense_Mutation p.A585V 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-96-8170-01 11 55339938 55339938 T A OR4C16 Missense_Mutation p.I112N 0.13 deleterious(0) possibly_damaging(0.675) TCGA-96-8170-01 11 55606303 55606303 C A OR5D16 Missense_Mutation p.Q26K 0.17 tolerated(0.1) benign(0.005) TCGA-96-8170-01 11 55761664 55761664 G T OR5F1 Silent p.A146A 0.15 TCGA-96-8170-01 11 56511057 56511057 G A OR9G4 Silent p.F77F 0.18 TCGA-96-8170-01 11 6129011 6129011 G A OR56B4 Translation_Start_Site p.M1? 0.14 deleterious(0) possibly_damaging(0.507) TCGA-96-8170-01 11 62292183 62292183 C G AHNAK Missense_Mutation p.E3236Q 0.05 benign(0.438) TCGA-96-8170-01 11 63141445 63141445 C G SLC22A9 Silent p.T247T 0.25 TCGA-96-8170-01 11 64064980 64064980 G A KCNK4 Silent p.A172A 0.08 TCGA-96-8170-01 11 64064995 64064995 G A KCNK4 Silent p.L177L 0.06 TCGA-96-8170-01 11 65784387 65784387 C G CATSPER1 Missense_Mutation p.A773P 0.15 deleterious(0.02) possibly_damaging(0.804) TCGA-96-8170-01 11 6588309 6588309 G A DNHD1 Missense_Mutation p.G3857E 0.15 possibly_damaging(0.894) TCGA-96-8170-01 11 67412513 67412513 C T ACY3 Intron 0.16 TCGA-96-8170-01 11 72145189 72145189 C A CLPB Missense_Mutation p.R110S 0.10 tolerated_low_confidence(0.36) benign(0.017) TCGA-96-8170-01 11 78437162 78437162 C T TENM4 Nonsense_Mutation p.W1171* 0.16 TCGA-96-8170-01 11 884073 884073 C T CHID1 Silent p.A291A 0.11 TCGA-96-8170-01 12 106461492 106461492 A G NUAK1 Silent p.S358S 0.20 TCGA-96-8170-01 12 111342478 111342478 C A CCDC63 Missense_Mutation p.P477T 0.19 tolerated(0.06) benign(0.057) TCGA-96-8170-01 12 117013724 117013724 C T MAP1LC3B2 5'UTR 0.13 TCGA-96-8170-01 12 15713153 15713153 C G PTPRO Missense_Mutation p.T885S 0.16 tolerated(0.09) probably_damaging(0.994) TCGA-96-8170-01 12 20876162 20876162 C T SLCO1C1 Missense_Mutation p.S387L 0.12 deleterious(0) probably_damaging(0.938) TCGA-96-8170-01 12 21013972 21013972 C A SLCO1B3 Silent p.T127T 0.13 TCGA-96-8170-01 12 21013973 21013973 C A SLCO1B3 Missense_Mutation p.H128N 0.13 tolerated(0.5) benign(0.004) TCGA-96-8170-01 12 21205109 21205109 G T SLCO1B7 Nonsense_Mutation p.E424* 0.14 TCGA-96-8170-01 12 21636345 21636345 T C RECQL Missense_Mutation p.H222R 0.16 deleterious(0) probably_damaging(0.997) TCGA-96-8170-01 12 21693385 21693385 C T GYS2 Missense_Mutation p.E590K 0.10 deleterious(0.02) probably_damaging(0.962) TCGA-96-8170-01 12 306623 306623 A T SLC6A12 Missense_Mutation p.V332E 0.06 deleterious(0) possibly_damaging(0.568) TCGA-96-8170-01 12 39703450 39703450 T C KIF21A Silent p.V1405V 0.16 TCGA-96-8170-01 12 40645160 40645160 A T LRRK2 Missense_Mutation p.K362M 0.19 tolerated(0.06) possibly_damaging(0.901) TCGA-96-8170-01 12 56231428 56231428 G A MMP19 Missense_Mutation p.P367S 0.07 tolerated(0.36) possibly_damaging(0.608) TCGA-96-8170-01 12 57466643 57466643 C T TMEM194A Silent p.K60K 0.10 TCGA-96-8170-01 12 57906114 57906114 G A MARS Silent p.L577L 0.21 TCGA-96-8170-01 12 65461523 65461523 G T WIF1 Missense_Mutation p.R196S 0.11 tolerated(0.14) benign(0.024) TCGA-96-8170-01 12 7556136 7556136 C G CD163L1 Missense_Mutation p.C468S 0.14 deleterious(0) probably_damaging(1) TCGA-96-8170-01 12 7942220 7942220 G A NANOG Missense_Mutation p.D4N 0.09 deleterious(0.01) benign(0.078) TCGA-96-8170-01 12 93155605 93155605 A T PLEKHG7 Nonsense_Mutation p.K260* 0.11 TCGA-96-8170-01 13 100925509 100925509 G C PCCA Missense_Mutation p.R325T 0.13 deleterious(0.01) benign(0.089) TCGA-96-8170-01 13 100925515 100925515 T C PCCA Missense_Mutation p.V327A 0.11 deleterious(0) possibly_damaging(0.88) TCGA-96-8170-01 13 25480874 25480874 G C CENPJ Missense_Mutation p.D434E 0.18 tolerated(1) benign(0) TCGA-96-8170-01 13 33703872 33703872 C T STARD13 Silent p.S314S 0.12 TCGA-96-8170-01 13 45517690 45517690 T A NUFIP1 Missense_Mutation p.S420C 0.19 tolerated(0.2) benign(0) TCGA-96-8170-01 13 48828070 48828070 C T ITM2B Nonsense_Mutation p.Q82* 0.11 TCGA-96-8170-01 13 58298886 58298886 G T PCDH17 Missense_Mutation p.A980S 0.20 tolerated(0.34) benign(0.126) TCGA-96-8170-01 13 70413147 70413147 C A KLHL1 Nonsense_Mutation p.G459* 0.15 TCGA-96-8170-01 13 77669612 77669612 C T MYCBP2 Silent p.P3322P 0.05 TCGA-96-8170-01 14 101507164 101507164 C A MIR376A1 RNA 0.15 TCGA-96-8170-01 14 102348570 102348570 G T PPP2R5C Missense_Mutation p.D154Y 0.12 deleterious(0) probably_damaging(0.997) TCGA-96-8170-01 14 106610576 106610576 T G IGHV3-15 Missense_Mutation p.K32Q 0.19 tolerated_low_confidence(1) benign(0.001) TCGA-96-8170-01 14 19553705 19553705 A T POTEG Nonsense_Mutation p.K97* 0.09 TCGA-96-8170-01 14 20404245 20404245 C G OR4K1 Silent p.L140L 0.16 TCGA-96-8170-01 14 35182473 35182473 C G CFL2 Missense_Mutation p.V100L 0.07 tolerated(0.07) benign(0.253) TCGA-96-8170-01 14 39717015 39717015 C A MIA2 Missense_Mutation p.H413N 0.18 deleterious(0.05) benign(0.35) TCGA-96-8170-01 14 51561554 51561554 C T TRIM9 Missense_Mutation p.R35H 0.11 tolerated(0.1) probably_damaging(0.953) TCGA-96-8170-01 14 55423795 55423795 G C WDHD1 Missense_Mutation p.S958C 0.04 deleterious(0.01) probably_damaging(0.96) TCGA-96-8170-01 14 69256445 69256445 C A ZFP36L1 Silent p.P274P 0.19 TCGA-96-8170-01 14 70712516 70712516 T C ADAM21P1 RNA 0.18 TCGA-96-8170-01 14 74061759 74061759 G C ACOT4 Missense_Mutation p.G223R 0.07 deleterious(0.01) probably_damaging(0.993) TCGA-96-8170-01 14 74062251 74062251 G A ACOT4 Missense_Mutation p.E387K 0.04 tolerated(0.06) probably_damaging(0.91) TCGA-96-8170-01 14 90398927 90398927 C T EFCAB11 Missense_Mutation p.E88K 0.09 tolerated(0.57) benign(0.098) TCGA-96-8170-01 14 91948336 91948336 C T SMEK1 Missense_Mutation p.E167K 0.16 deleterious(0.01) benign(0.256) TCGA-96-8170-01 14 93264306 93264306 C G GOLGA5 Missense_Mutation p.S175C 0.04 deleterious(0.01) possibly_damaging(0.467) TCGA-96-8170-01 15 29367150 29367150 G C APBA2 Missense_Mutation p.R326S 0.14 tolerated_low_confidence(0.24) benign(0.119) TCGA-96-8170-01 15 33194143 33194143 C T FMN1 Missense_Mutation p.R936K 0.07 deleterious(0.02) probably_damaging(0.968) TCGA-96-8170-01 15 34356423 34356423 T A CHRM5 Missense_Mutation p.F502Y 0.15 deleterious(0) probably_damaging(0.997) TCGA-96-8170-01 15 43813873 43813873 C A MAP1A Missense_Mutation p.R68S 0.22 probably_damaging(0.955) TCGA-96-8170-01 15 43888816 43888816 C T CKMT1B Intron 0.12 TCGA-96-8170-01 15 63571409 63571409 A T APH1B Missense_Mutation p.M55L 0.14 tolerated(0.3) benign(0.002) TCGA-96-8170-01 15 63991141 63991141 T C HERC1 Missense_Mutation p.H1564R 0.15 benign(0.013) TCGA-96-8170-01 15 66777515 66777515 G T MAP2K1 Missense_Mutation p.G294V 0.20 deleterious(0.02) benign(0.158) TCGA-96-8170-01 15 74703979 74703979 C T SEMA7A Missense_Mutation p.G499S 0.15 tolerated(0.34) benign(0.036) TCGA-96-8170-01 15 86262346 86262346 A T AKAP13 Missense_Mutation p.K2018M 0.10 deleterious(0) probably_damaging(0.91) TCGA-96-8170-01 16 2051647 2051647 C T ZNF598 Missense_Mutation p.R317Q 0.34 probably_damaging(1) TCGA-96-8170-01 16 30002701 30002701 A T TAOK2 3'Flank 0.21 TCGA-96-8170-01 16 31073094 31073094 C T ZNF668 Silent p.V408V 0.04 TCGA-96-8170-01 16 57073733 57073733 C A NLRC5 Missense_Mutation p.P948T 0.15 tolerated(0.49) benign(0.009) TCGA-96-8170-01 16 67681960 67681960 C G RLTPR Silent p.L359L 0.35 TCGA-96-8170-01 16 75665400 75665400 G A KARS Missense_Mutation p.P417L 0.16 deleterious(0.01) possibly_damaging(0.719) TCGA-96-8170-01 16 85948115 85948115 C A IRF8 Missense_Mutation p.A197E 0.14 tolerated(0.23) benign(0.113) TCGA-96-8170-01 16 90104242 90104242 C T GAS8 Nonsense_Mutation p.Q333* 0.19 TCGA-96-8170-01 17 26727680 26727680 C A SLC46A1 Missense_Mutation p.G423V 0.11 deleterious(0) probably_damaging(1) TCGA-96-8170-01 17 3195562 3195562 G A OR3A1 Silent p.F105F 0.22 TCGA-96-8170-01 17 33279048 33279048 C A CCT6B Missense_Mutation p.V179F 0.13 deleterious(0.01) benign(0.11) TCGA-96-8170-01 17 38643445 38643445 G A TNS4 Silent p.I377I 0.08 TCGA-96-8170-01 17 39017890 39017890 C G KRT12 3'UTR 0.10 TCGA-96-8170-01 17 42082046 42082046 G C NAGS Silent p.L5L 0.13 TCGA-96-8170-01 17 43912190 43912190 C A CRHR1 3'UTR 0.19 TCGA-96-8170-01 17 57754397 57754397 A G CLTC Missense_Mutation p.I882V 0.17 tolerated(0.07) possibly_damaging(0.68) TCGA-96-8170-01 17 59984857 59984857 C T INTS2 Missense_Mutation p.V373M 0.20 tolerated(0.28) possibly_damaging(0.73) TCGA-96-8170-01 17 61958764 61958764 G T GH2 Silent p.R42R 0.20 TCGA-96-8170-01 17 65908669 65908669 C G BPTF Missense_Mutation p.L1557V 0.04 benign(0.412) TCGA-96-8170-01 17 74729800 74729800 C G METTL23 3'UTR 0.11 TCGA-96-8170-01 17 7579528 7579529 - A TP53 Frame_Shift_Ins p.W53Cfs*4 0.18 TCGA-96-8170-01 17 80542033 80542033 C G FOXK2 Missense_Mutation p.I416M 0.32 tolerated(0.05) probably_damaging(0.976) TCGA-96-8170-01 17 80790328 80790328 C G ZNF750 Translation_Start_Site p.M1? 0.15 deleterious(0) probably_damaging(0.986) TCGA-96-8170-01 19 11728005 11728005 G A ZNF627 Silent p.G229G 0.14 TCGA-96-8170-01 19 13919732 13919732 G A ZSWIM4 Silent p.V265V 0.14 TCGA-96-8170-01 19 14000069 14000069 C G C19orf57 Missense_Mutation p.D534H 0.16 deleterious(0.04) probably_damaging(0.988) TCGA-96-8170-01 19 19638849 19638849 G T NDUFA13 Missense_Mutation p.V117L 0.22 tolerated(0.07) possibly_damaging(0.868) TCGA-96-8170-01 19 19822110 19822110 T C ZNF14 3'UTR 0.15 TCGA-96-8170-01 19 2015399 2015399 T A BTBD2 Missense_Mutation p.T102S 0.24 tolerated(0.26) benign(0.027) TCGA-96-8170-01 19 23159616 23159616 A G ZNF728 Missense_Mutation p.C175R 0.17 deleterious(0.01) probably_damaging(0.975) TCGA-96-8170-01 19 3162874 3162874 G A GNA15 Missense_Mutation p.E328K 0.15 deleterious(0.04) benign(0.013) TCGA-96-8170-01 19 39591847 39591847 G T PAPL Nonsense_Mutation p.G325* 0.15 TCGA-96-8170-01 19 39591848 39591848 G T PAPL Splice_Site p.X325_splice 0.15 TCGA-96-8170-01 19 42753276 42753276 C T ERF Missense_Mutation p.A330T 0.28 tolerated(0.71) benign(0.074) TCGA-96-8170-01 19 50957537 50957537 C A MYBPC2 Missense_Mutation p.P642Q 0.25 deleterious(0) probably_damaging(1) TCGA-96-8170-01 19 51509743 51509743 G C KLK9 Nonsense_Mutation p.S146* 0.11 TCGA-96-8170-01 19 53643558 53643558 C A ZNF347 3'UTR 0.20 TCGA-96-8170-01 19 54233112 54233112 G T MIR518E RNA 0.13 TCGA-96-8170-01 19 54242605 54242605 C T MIR518A2 RNA 0.11 TCGA-96-8170-01 19 54783280 54783280 G T LILRB2 Nonsense_Mutation p.S193* 0.23 TCGA-96-8170-01 19 55175841 55175841 C T LILRB4 Missense_Mutation p.S187L 0.35 deleterious(0.02) possibly_damaging(0.52) TCGA-96-8170-01 19 56244686 56244686 C G NLRP9 Missense_Mutation p.E171Q 0.05 tolerated(0.07) probably_damaging(0.966) TCGA-96-8170-01 19 56423199 56423199 C G NLRP13 Missense_Mutation p.D662H 0.05 tolerated(0.09) possibly_damaging(0.503) TCGA-96-8170-01 19 56459517 56459517 G T NLRP8 Missense_Mutation p.E83D 0.09 tolerated(0.48) probably_damaging(0.998) TCGA-96-8170-01 19 56692003 56692003 G A GALP Missense_Mutation p.V46I 0.12 tolerated(0.14) benign(0.291) TCGA-96-8170-01 19 9060635 9060635 G A MUC16 Silent p.N8937N 0.19 TCGA-96-8170-01 1 10035736 10035736 A G NMNAT1 Missense_Mutation p.I68V 0.11 deleterious(0.04) benign(0.006) TCGA-96-8170-01 1 110882704 110882704 A G RBM15 Missense_Mutation p.E226G 0.10 deleterious(0) possibly_damaging(0.828) TCGA-96-8170-01 1 112045799 112045799 C A ADORA3 Missense_Mutation p.A60S 0.08 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-96-8170-01 1 118574431 118574431 C T SPAG17 Missense_Mutation p.V1165M 0.20 deleterious(0.03) possibly_damaging(0.757) TCGA-96-8170-01 1 145281508 145281508 G A NOTCH2NL Silent p.E146E 0.05 TCGA-96-8170-01 1 150256221 150256221 G C C1orf51 Missense_Mutation p.E125Q 0.05 deleterious(0) probably_damaging(0.998) TCGA-96-8170-01 1 151263283 151263283 T A ZNF687 Silent p.P1104P 0.27 TCGA-96-8170-01 1 154164524 154164524 G A TPM3 5'UTR 0.15 TCGA-96-8170-01 1 157514800 157514800 G T FCRL5 Missense_Mutation p.A127E 0.15 tolerated(0.2) benign(0.025) TCGA-96-8170-01 1 158619669 158619669 G T SPTA1 Silent p.A1182A 0.18 TCGA-96-8170-01 1 158815398 158815398 C A MNDA Silent p.R198R 0.14 TCGA-96-8170-01 1 161021263 161021263 G T ARHGAP30 Missense_Mutation p.P421T 0.19 deleterious(0) probably_damaging(0.912) TCGA-96-8170-01 1 161494977 161494977 G C HSPA6 Missense_Mutation p.E177Q 0.09 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-96-8170-01 1 161495106 161495106 G C HSPA6 Missense_Mutation p.E220Q 0.07 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-96-8170-01 1 169572294 169572294 G C SELP Missense_Mutation p.R559G 0.20 tolerated(0.38) benign(0.06) TCGA-96-8170-01 1 17395644 17395644 G A PADI2 Silent p.F631F 0.17 TCGA-96-8170-01 1 175299335 175299335 C A TNR Missense_Mutation p.R1223L 0.20 deleterious(0.01) possibly_damaging(0.907) TCGA-96-8170-01 1 185153476 185153476 G C SWT1 Missense_Mutation p.G414R 0.18 deleterious(0) probably_damaging(0.997) TCGA-96-8170-01 1 193038217 193038217 G A TROVE2 Silent p.L11L 0.14 TCGA-96-8170-01 1 205388448 205388448 C G LEMD1 Missense_Mutation p.V39L 0.10 tolerated(0.09) benign(0.299) TCGA-96-8170-01 1 205388471 205388471 C T LEMD1 Missense_Mutation p.R31K 0.11 deleterious(0) benign(0.22) TCGA-96-8170-01 1 207105098 207105098 G A PIGR Silent p.F686F 0.04 TCGA-96-8170-01 1 23759589 23759589 A G ASAP3 Silent p.C768C 0.04 TCGA-96-8170-01 1 237881784 237881784 G T RYR2 Missense_Mutation p.R3506L 0.13 possibly_damaging(0.734) TCGA-96-8170-01 1 248366890 248366890 T C OR2M3 Missense_Mutation p.I174T 0.17 deleterious(0) probably_damaging(0.981) TCGA-96-8170-01 1 248525726 248525726 C G OR2T4 Missense_Mutation p.L282V 0.13 deleterious(0.01) possibly_damaging(0.841) TCGA-96-8170-01 1 26360198 26360198 C G EXTL1 Silent p.A510A 0.14 TCGA-96-8170-01 1 28293177 28293177 G A XKR8 Silent p.V218V 0.19 TCGA-96-8170-01 1 3662658 3662658 G C TP73-AS1 RNA 0.12 TCGA-96-8170-01 1 36785889 36785889 C T SH3D21 Missense_Mutation p.S542F 0.28 deleterious(0) probably_damaging(0.948) TCGA-96-8170-01 1 43772593 43772593 G A TIE1 Silent p.S189S 0.14 TCGA-96-8170-01 1 43826012 43826012 C G CDC20 Missense_Mutation p.I235M 0.08 tolerated(0.06) benign(0.206) TCGA-96-8170-01 1 44437080 44437080 G A DPH2 Missense_Mutation p.R169H 0.14 tolerated(0.55) benign(0.005) TCGA-96-8170-01 1 70504338 70504338 G T LRRC7 Missense_Mutation p.S906I 0.17 tolerated_low_confidence(0.06) benign(0.054) TCGA-96-8170-01 1 71318504 71318504 C A PTGER3 3'UTR 0.19 TCGA-96-8170-01 1 74665383 74665383 G T FPGT-TNNI3K Missense_Mutation p.V53F 0.21 deleterious_low_confidence(0) benign(0.044) TCGA-96-8170-01 1 93812350 93812350 A G DR1 Missense_Mutation p.I50V 0.09 tolerated(0.48) benign(0.04) TCGA-96-8170-01 20 13971165 13971165 G T SEL1L2 Missense_Mutation p.L6M 0.10 deleterious_low_confidence(0.05) probably_damaging(0.969) TCGA-96-8170-01 20 23545621 23545621 G T CST9L Missense_Mutation p.S136R 0.14 tolerated(0.18) benign(0.01) TCGA-96-8170-01 20 2816059 2816059 C A PCED1A 3'UTR 0.17 TCGA-96-8170-01 21 10952956 10952956 T C TPTE Missense_Mutation p.I81V 0.05 tolerated(0.21) benign(0.029) TCGA-96-8170-01 21 11039017 11039017 A T BAGE2 RNA 0.03 TCGA-96-8170-01 21 41725396 41725396 C A DSCAM Silent p.V310V 0.07 TCGA-96-8170-01 22 31679224 31679225 - TT PIK3IP1 Frame_Shift_Ins p.M213Kfs*84 0.20 TCGA-96-8170-01 22 37906299 37906299 C G CARD10 Missense_Mutation p.V277L 0.34 tolerated(0.3) benign(0.001) TCGA-96-8170-01 22 46677609 46677609 C G TTC38 Missense_Mutation p.F243L 0.06 tolerated(0.15) benign(0) TCGA-96-8170-01 22 51121844 51121844 A G SHANK3 Missense_Mutation p.Q321R 0.25 probably_damaging(0.998) TCGA-96-8170-01 2 114684938 114684938 G T ACTR3 Missense_Mutation p.G81V 0.10 deleterious(0) probably_damaging(0.993) TCGA-96-8170-01 2 152515680 152515680 G A NEB Missense_Mutation p.L1992F 0.13 probably_damaging(0.966) TCGA-96-8170-01 2 152531060 152531060 C G NEB Missense_Mutation p.K1306N 0.11 probably_damaging(0.999) TCGA-96-8170-01 2 179319142 179319142 G A DFNB59 Missense_Mutation p.D99N 0.05 tolerated(0.17) benign(0.435) TCGA-96-8170-01 2 179585325 179585325 G A TTN Nonsense_Mutation p.Q7722* 0.21 TCGA-96-8170-01 2 196759877 196759877 G C DNAH7 Missense_Mutation p.I1573M 0.04 deleterious(0.04) possibly_damaging(0.832) TCGA-96-8170-01 2 211158450 211158450 C T MYL1 Missense_Mutation p.E185K 0.03 deleterious(0.04) probably_damaging(0.994) TCGA-96-8170-01 2 211541739 211541739 G C CPS1 Missense_Mutation p.R1434T 0.14 tolerated(0.2) benign(0.029) TCGA-96-8170-01 2 228884172 228884172 G T SPHKAP Silent p.G466G 0.19 TCGA-96-8170-01 2 27706458 27706458 G A IFT172 Silent p.S157S 0.14 TCGA-96-8170-01 2 29455194 29455194 G A ALK Silent p.L870L 0.13 TCGA-96-8170-01 2 40657194 40657194 G T SLC8A1 Missense_Mutation p.A76D 0.21 deleterious(0) probably_damaging(0.951) TCGA-96-8170-01 2 48698254 48698254 C G PPP1R21 Missense_Mutation p.S309C 0.22 deleterious(0.02) possibly_damaging(0.705) TCGA-96-8170-01 2 70088469 70088469 A T GMCL1 Missense_Mutation p.S378C 0.15 deleterious(0.04) benign(0.003) TCGA-96-8170-01 2 79878682 79878682 C A CTNNA2 5'UTR 0.15 TCGA-96-8170-01 2 90139388 90139388 C A IGKV1D-16 Missense_Mutation p.S53R 0.17 tolerated(0.06) benign(0.007) TCGA-96-8170-01 2 90212098 90212098 C - IGKV3D-11 Frame_Shift_Del p.R65Gfs*34 0.14 TCGA-96-8170-01 3 101520676 101520676 G T NXPE3 Missense_Mutation p.G231W 0.14 deleterious(0.01) possibly_damaging(0.735) TCGA-96-8170-01 3 107885748 107885748 C T IFT57 Missense_Mutation p.E312K 0.05 deleterious(0) probably_damaging(0.975) TCGA-96-8170-01 3 111312452 111312452 C A ZBED2 Missense_Mutation p.K199N 0.12 deleterious(0.05) benign(0.004) TCGA-96-8170-01 3 112991289 112991289 C T BOC Missense_Mutation p.P234S 0.07 deleterious(0.01) probably_damaging(0.964) TCGA-96-8170-01 3 124689552 124689552 C T HEG1 Missense_Mutation p.G1364R 0.16 deleterious(0) probably_damaging(0.999) TCGA-96-8170-01 3 133371475 133371475 T C TOPBP1 Splice_Site p.X308_splice 0.32 TCGA-96-8170-01 3 138033230 138033230 G A NME9 Missense_Mutation p.S74F 0.05 deleterious(0.04) possibly_damaging(0.481) TCGA-96-8170-01 3 14724321 14724321 A C C3orf20 Missense_Mutation p.N34T 0.19 tolerated(0.09) benign(0.037) TCGA-96-8170-01 3 151101587 151101587 G T MED12L Silent p.T1532T 0.09 TCGA-96-8170-01 3 154007576 154007576 A G DHX36 Silent p.L618L 0.30 TCGA-96-8170-01 3 164700182 164700182 G C SI Missense_Mutation p.T1755S 0.20 tolerated(0.7) benign(0.004) TCGA-96-8170-01 3 167745578 167745578 C A GOLIM4 Missense_Mutation p.G521C 0.15 deleterious(0.03) possibly_damaging(0.749) TCGA-96-8170-01 3 169801691 169801691 A C GPR160 Splice_Site 0.13 TCGA-96-8170-01 3 186572553 186572553 C G ADIPOQ 3'UTR 0.05 TCGA-96-8170-01 3 196387949 196387949 G T NRROS Missense_Mutation p.D479Y 0.24 deleterious(0.03) possibly_damaging(0.646) TCGA-96-8170-01 3 45077114 45077114 G T CLEC3B Missense_Mutation p.G103C 0.23 deleterious(0) probably_damaging(1) TCGA-96-8170-01 3 52786135 52786135 G C NEK4 Missense_Mutation p.S394C 0.26 tolerated(0.08) benign(0.03) TCGA-96-8170-01 3 97753762 97753762 C T GABRR3 RNA 0.19 TCGA-96-8170-01 3 99509616 99509616 C A COL8A1 Nonsense_Mutation p.Y30* 0.29 TCGA-96-8170-01 4 123533863 123533863 C A IL21 3'UTR 0.15 TCGA-96-8170-01 4 126238571 126238571 G A FAT4 Silent p.G335G 0.27 TCGA-96-8170-01 4 140375449 140375449 T G RAB33B Missense_Mutation p.F34V 0.08 deleterious(0.02) probably_damaging(0.942) TCGA-96-8170-01 4 1804642 1804642 C G FGFR3 Missense_Mutation p.S311C 0.37 deleterious(0) possibly_damaging(0.754) TCGA-96-8170-01 4 187521136 187521136 G A FAT1 Missense_Mutation p.P4007S 0.16 benign(0.052) TCGA-96-8170-01 4 20715148 20715148 C A PACRGL Missense_Mutation p.H199N 0.21 tolerated(0.45) benign(0.004) TCGA-96-8170-01 4 46314659 46314659 G T GABRA2 Silent p.I110I 0.12 TCGA-96-8170-01 4 55599314 55599314 G T KIT Missense_Mutation p.A814S 0.16 deleterious(0) probably_damaging(1) TCGA-96-8170-01 4 62758423 62758423 C A LPHN3 Silent p.T442T 0.14 TCGA-96-8170-01 4 6325062 6325062 G T PPP2R2C Silent p.I437I 0.15 TCGA-96-8170-01 4 76452537 76452537 T C THAP6 3'UTR 0.27 TCGA-96-8170-01 4 8089900 8089900 G C ABLIM2 Silent p.L150L 0.35 TCGA-96-8170-01 4 99030421 99030421 T A STPG2 Silent p.I141I 0.07 TCGA-96-8170-01 5 1063986 1063986 G A SLC12A7 Silent p.I904I 0.07 TCGA-96-8170-01 5 107006309 107006309 C T EFNA5 Silent p.L2L 0.18 TCGA-96-8170-01 5 110079453 110079453 G T SLC25A46 Missense_Mutation p.A117S 0.07 tolerated(0.67) benign(0.017) TCGA-96-8170-01 5 112197068 112197068 G A SRP19 5'UTR 0.18 TCGA-96-8170-01 5 135692683 135692683 G A TRPC7 Silent p.F131F 0.06 TCGA-96-8170-01 5 1474684 1474684 C A LPCAT1 Missense_Mutation p.R339L 0.20 deleterious(0.01) probably_damaging(0.953) TCGA-96-8170-01 5 150853320 150853320 A T SLC36A1 Missense_Mutation p.E270D 0.16 deleterious(0) probably_damaging(0.986) TCGA-96-8170-01 5 15928155 15928155 G A FBXL7 Missense_Mutation p.R95H 0.11 tolerated(0.59) benign(0.032) TCGA-96-8170-01 5 167835557 167835557 C T WWC1 Missense_Mutation p.H256Y 0.07 deleterious(0) possibly_damaging(0.767) TCGA-96-8170-01 5 172659715 172659715 G T NKX2-5 Missense_Mutation p.P278T 0.31 tolerated(0.19) benign(0.009) TCGA-96-8170-01 5 176323178 176323178 G T HK3 5'UTR 0.19 TCGA-96-8170-01 5 23509099 23509099 C A PRDM9 5'UTR 0.21 TCGA-96-8170-01 5 35084679 35084679 C T PRLR Missense_Mutation p.G89D 0.46 tolerated(1) benign(0.007) TCGA-96-8170-01 5 37048691 37048691 C G NIPBL Nonsense_Mutation p.S2226* 0.03 TCGA-96-8170-01 5 38966783 38966783 G A RICTOR Missense_Mutation p.S420L 0.11 deleterious(0.05) benign(0.389) TCGA-96-8170-01 5 41012792 41012792 C T MROH2B Missense_Mutation p.E1010K 0.23 tolerated(0.2) benign(0.061) TCGA-96-8170-01 5 54442513 54442513 G A CDC20B Missense_Mutation p.P100S 0.19 tolerated(0.32) benign(0.017) TCGA-96-8170-01 5 59064079 59064079 T C PDE4D Intron 0.15 TCGA-96-8170-01 5 68551333 68551333 A G CDK7 Missense_Mutation p.D92G 0.18 deleterious(0.02) benign(0.04) TCGA-96-8170-01 5 71490294 71490294 A G MAP1B Missense_Mutation p.N371S 0.19 unknown(0) TCGA-96-8170-01 5 74698802 74698802 C G COL4A3BP Missense_Mutation p.E466Q 0.06 deleterious(0.03) benign(0.331) TCGA-96-8170-01 5 79368014 79368014 A G THBS4 Intron 0.14 TCGA-96-8170-01 5 9202093 9202093 C G SEMA5A Missense_Mutation p.L302F 0.04 deleterious(0) possibly_damaging(0.903) TCGA-96-8170-01 6 130505691 130505691 T C SAMD3 Missense_Mutation p.Y154C 0.16 deleterious(0) probably_damaging(0.998) TCGA-96-8170-01 6 132891493 132891493 G T TAAR6 Silent p.V11V 0.16 TCGA-96-8170-01 6 132891706 132891706 T A TAAR6 Silent p.G82G 0.16 TCGA-96-8170-01 6 132966469 132966469 C G TAAR1 Missense_Mutation p.S225T 0.14 tolerated(0.23) benign(0.102) TCGA-96-8170-01 6 161015116 161015116 C G LPA Missense_Mutation p.C1168S 0.11 deleterious(0) probably_damaging(0.951) TCGA-96-8170-01 6 166580931 166580931 T C T Missense_Mutation p.E50G 0.09 deleterious(0.01) benign(0.417) TCGA-96-8170-01 6 1961019 1961019 C A GMDS Missense_Mutation p.R176L 0.18 deleterious_low_confidence(0) probably_damaging(1) TCGA-96-8170-01 6 31734367 31734367 G A VWA7 Missense_Mutation p.S686L 0.08 tolerated(0.28) benign(0.006) TCGA-96-8170-01 6 31832491 31832491 A G SLC44A4 Missense_Mutation p.V650A 0.12 deleterious(0) benign(0.297) TCGA-96-8170-01 6 32020625 32020625 G A TNXB Silent p.F2977F 0.09 TCGA-96-8170-01 6 32713605 32713605 G T HLA-DQA2 Silent p.V123V 0.20 TCGA-96-8170-01 6 35466211 35466211 G T TULP1 Missense_Mutation p.R508S 0.27 deleterious(0) probably_damaging(1) TCGA-96-8170-01 6 36978773 36978773 G T FGD2 Nonsense_Mutation p.E109* 0.12 TCGA-96-8170-01 6 51513947 51513947 G T PKHD1 Missense_Mutation p.P3749H 0.16 deleterious(0) probably_damaging(1) TCGA-96-8170-01 6 53989547 53989547 A T MLIP Missense_Mutation p.I166F 0.14 deleterious(0.01) possibly_damaging(0.587) TCGA-96-8170-01 6 6175044 6175044 G T F13A1 Missense_Mutation p.P506T 0.25 tolerated(0.3) benign(0.001) TCGA-96-8170-01 6 70034835 70034835 G T BAI3 Missense_Mutation p.E962D 0.20 deleterious(0) probably_damaging(0.992) TCGA-96-8170-01 6 76660730 76660730 G T IMPG1 Missense_Mutation p.S458Y 0.16 deleterious(0) probably_damaging(0.935) TCGA-96-8170-01 7 111634243 111634243 C T DOCK4 Missense_Mutation p.E88K 0.15 deleterious(0) benign(0.371) TCGA-96-8170-01 7 119914919 119914919 C A KCND2 Missense_Mutation p.P78Q 0.16 tolerated(0.07) benign(0.011) TCGA-96-8170-01 7 128452209 128452209 G C CCDC136 Missense_Mutation p.S795T 0.25 deleterious(0.01) possibly_damaging(0.64) TCGA-96-8170-01 7 129680793 129680793 C T ZC3HC1 Missense_Mutation p.R136K 0.12 tolerated(1) benign(0.004) TCGA-96-8170-01 7 139060885 139060885 G T C7orf55-LUC7L2 Missense_Mutation p.D47Y 0.19 deleterious(0.02) probably_damaging(0.989) TCGA-96-8170-01 7 143056500 143056500 C A FAM131B Missense_Mutation p.D63Y 0.19 deleterious(0) probably_damaging(0.909) TCGA-96-8170-01 7 42005985 42005985 C A GLI3 Missense_Mutation p.D896Y 0.16 deleterious(0) probably_damaging(0.997) TCGA-96-8170-01 7 51258609 51258609 T A COBL Missense_Mutation p.E208V 0.16 deleterious(0) probably_damaging(1) TCGA-96-8170-01 7 57188753 57188753 T A ZNF479 Missense_Mutation p.L123F 0.18 deleterious(0.04) probably_damaging(0.998) TCGA-96-8170-01 7 81593544 81593544 T A CACNA2D1 Silent p.A902A 0.14 TCGA-96-8170-01 8 105361267 105361267 G A DCSTAMP Missense_Mutation p.D163N 0.05 tolerated(0.09) benign(0.046) TCGA-96-8170-01 8 113241099 113241099 G C CSMD3 Nonsense_Mutation p.S3617* 0.06 TCGA-96-8170-01 8 113649124 113649124 G C CSMD3 Missense_Mutation p.R1213G 0.11 deleterious(0) probably_damaging(1) TCGA-96-8170-01 8 139165242 139165242 C T FAM135B Missense_Mutation p.M492I 0.28 tolerated(0.52) benign(0) TCGA-96-8170-01 8 29963404 29963404 A G LEPROTL1 Intron 0.21 TCGA-96-8170-01 8 33346303 33346303 G T MAK16 Missense_Mutation p.R76L 0.17 deleterious(0.01) possibly_damaging(0.903) TCGA-96-8170-01 8 55538177 55538177 G C RP1 Missense_Mutation p.D579H 0.10 deleterious(0.01) possibly_damaging(0.786) TCGA-96-8170-01 8 69031699 69031699 C T PREX2 Missense_Mutation p.H1152Y 0.05 tolerated(0.14) benign(0.255) TCGA-96-8170-01 8 90798854 90798854 A T RIPK2 Missense_Mutation p.S355C 0.27 tolerated(0.09) possibly_damaging(0.572) TCGA-96-8170-01 8 94809647 94809647 G C TMEM67 Silent p.V683V 0.05 TCGA-96-8170-01 8 99440794 99440794 T C KCNS2 Missense_Mutation p.V196A 0.23 tolerated(0.07) probably_damaging(0.956) TCGA-96-8170-01 9 104433231 104433231 T - GRIN3A Frame_Shift_Del p.K488Rfs*28 0.22 TCGA-96-8170-01 9 125486490 125486490 C T OR1L4 Silent p.F74F 0.17 TCGA-96-8170-01 9 128064527 128064527 C T GAPVD1 Nonsense_Mutation p.Q151* 0.04 TCGA-96-8170-01 9 131233599 131233599 A G ODF2 Missense_Mutation p.K145E 0.32 tolerated(0.06) benign(0.034) TCGA-96-8170-01 9 131607757 131607757 C G CCBL1 Intron 0.15 TCGA-96-8170-01 9 37745383 37745383 C G FRMPD1 Missense_Mutation p.N1118K 0.11 tolerated_low_confidence(0.15) benign(0.031) TCGA-96-8170-01 9 404993 404993 G C DOCK8 Missense_Mutation p.E1104Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-96-8170-01 9 6413434 6413434 G T UHRF2 5'UTR 0.17 TCGA-96-8170-01 9 84532615 84532615 A T SPATA31D5P RNA 0.17 TCGA-96-8170-01 X 100667477 100667477 G T HNRNPH2 Missense_Mutation p.K167N 0.17 tolerated(0.15) possibly_damaging(0.457) TCGA-96-8170-01 X 10102518 10102518 C A WWC3 Missense_Mutation p.A882D 0.18 deleterious(0.04) possibly_damaging(0.522) TCGA-96-8170-01 X 10102519 10102519 C A WWC3 Silent p.A882A 0.18 TCGA-96-8170-01 X 108695306 108695306 C A GUCY2F Missense_Mutation p.C473F 0.10 tolerated(1) benign(0.002) TCGA-96-8170-01 X 118971844 118971844 A T UPF3B Missense_Mutation p.M393K 0.19 tolerated(0.18) benign(0.013) TCGA-96-8170-01 X 120007855 120007855 G T CT47B1 Silent p.P265P 0.16 TCGA-96-8170-01 X 123200254 123200255 - T STAG2 Frame_Shift_Ins p.A746Cfs*2 0.09 TCGA-96-8170-01 X 128884472 128884472 C A XPNPEP2 Silent p.G222G 0.19 TCGA-96-8170-01 X 133549100 133549100 G C PHF6 Missense_Mutation p.D262H 0.11 tolerated(0.13) probably_damaging(0.975) TCGA-96-8170-01 X 135314374 135314374 C A MAP7D3 Missense_Mutation p.G248C 0.12 deleterious(0.01) benign(0.06) TCGA-96-8170-01 X 147084724 147084724 C A FMR1NB Missense_Mutation p.S94Y 0.13 tolerated(1) benign(0.102) TCGA-96-8170-01 X 147084725 147084725 C A FMR1NB Silent p.S94S 0.13 TCGA-96-8170-01 X 147743796 147743796 C T AFF2 Missense_Mutation p.T183I 0.20 tolerated(0.16) benign(0.193) TCGA-96-8170-01 X 151283919 151283919 T C RP11-1007I13.4 RNA 0.17 TCGA-96-8170-01 X 15364244 15364244 G T FIGF 3'UTR 0.16 TCGA-96-8170-01 X 18643306 18643306 G A CDKL5 Missense_Mutation p.S812N 0.20 tolerated_low_confidence(0.3) benign(0.001) TCGA-96-8170-01 X 19046337 19046337 G C GPR64 Missense_Mutation p.I126M 0.06 deleterious_low_confidence(0) possibly_damaging(0.864) TCGA-96-8170-01 X 19380855 19380855 C A MAP3K15 Splice_Site p.X1227_splice 0.12 TCGA-96-8170-01 X 24690692 24690692 G - PCYT1B Frame_Shift_Del p.R20Afs*4 0.13 TCGA-96-8170-01 X 27765904 27765904 C G DCAF8L2 Missense_Mutation p.R298G 0.11 deleterious(0) probably_damaging(0.946) TCGA-96-8170-01 X 27998456 27998456 A T DCAF8L1 Missense_Mutation p.D332E 0.17 tolerated(1) benign(0.001) TCGA-96-8170-01 X 3248697 3248697 G C MXRA5 Silent p.L102L 0.04 TCGA-96-8170-01 X 47041209 47041209 G T RBM10 Missense_Mutation p.S546I 0.17 deleterious(0.03) possibly_damaging(0.797) TCGA-96-8170-01 X 47272898 47272898 G T ZNF157 Missense_Mutation p.G476W 0.14 tolerated(0.06) probably_damaging(1) TCGA-96-8170-01 X 47272899 47272899 G T ZNF157 Missense_Mutation p.G476V 0.14 deleterious(0) probably_damaging(1) TCGA-96-8170-01 X 48820049 48820049 G T KCND1 Silent p.A579A 0.19 TCGA-96-8170-01 X 53596716 53596716 G T HUWE1 Silent p.T2128T 0.15 TCGA-96-8170-01 X 53612065 53612065 G T HUWE1 Missense_Mutation p.S1636R 0.17 benign(0.099) TCGA-96-8170-01 X 54780185 54780185 G A ITIH6 Missense_Mutation p.P1084L 0.16 deleterious(0.02) benign(0.36) TCGA-96-8170-01 X 55286969 55286969 G T PAGE3 Missense_Mutation p.A106E 0.15 deleterious(0.03) probably_damaging(0.96) TCGA-96-8170-01 X 62570393 62570393 A T SPIN4 Silent p.P102P 0.14 TCGA-96-8170-01 X 63410188 63410188 G T AMER1 Silent p.T993T 0.27 TCGA-96-8170-01 X 64958448 64958448 A T MSN Missense_Mutation p.K438M 0.11 deleterious(0.03) possibly_damaging(0.886) TCGA-96-8170-01 X 86873040 86873040 A G KLHL4 Missense_Mutation p.Q278R 0.20 tolerated(0.06) benign(0.224) TCGA-96-8170-01 X 99956921 99956921 T A SYTL4 Intron 0.25 TCGA-96-A4JK-01 10 101292841 101292841 C T NKX2-3 5'UTR 0.37 TCGA-96-A4JK-01 10 105948089 105948089 C A WDR96 Silent p.S542S 0.32 TCGA-96-A4JK-01 10 118138019 118138019 G A CCDC172 Silent p.E246E 0.27 TCGA-96-A4JK-01 10 120925060 120925060 T C SFXN4 Missense_Mutation p.T34A 0.21 tolerated(0.62) benign(0.012) TCGA-96-A4JK-01 10 15760887 15760887 A G ITGA8 Missense_Mutation p.L74S 0.28 deleterious(0) probably_damaging(0.999) TCGA-96-A4JK-01 10 17165660 17165660 T A CUBN Missense_Mutation p.N139I 0.15 deleterious(0) probably_damaging(0.984) TCGA-96-A4JK-01 10 20506449 20506449 T C PLXDC2 Missense_Mutation p.L406P 0.08 tolerated(0.2) benign(0.002) TCGA-96-A4JK-01 10 28906601 28906601 G C WAC Missense_Mutation p.E588Q 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-96-A4JK-01 10 64148256 64148256 T A ZNF365 Missense_Mutation p.V282E 0.28 deleterious_low_confidence(0.01) probably_damaging(0.967) TCGA-96-A4JK-01 10 68687901 68687902 - G LRRTM3 Frame_Shift_Ins p.A410Gfs*2 0.21 TCGA-96-A4JK-01 10 70097497 70097497 A T HNRNPH3 Intron 0.40 TCGA-96-A4JK-01 10 7773772 7773772 A G ITIH2 Splice_Site p.X488_splice 0.14 TCGA-96-A4JK-01 10 84745276 84745276 C A NRG3 Missense_Mutation p.P669H 0.11 deleterious_low_confidence(0) probably_damaging(1) TCGA-96-A4JK-01 10 93272261 93272261 T C HECTD2 3'UTR 0.43 TCGA-96-A4JK-01 11 1017468 1017468 G T MUC6 Missense_Mutation p.T1778N 0.06 benign(0.403) TCGA-96-A4JK-01 11 103814301 103814301 A G PDGFD Silent p.F217F 0.38 TCGA-96-A4JK-01 11 107673724 107673724 T G SLC35F2 Intron 0.11 TCGA-96-A4JK-01 11 108380562 108380562 T G EXPH5 Missense_Mutation p.K1891T 0.30 deleterious(0) probably_damaging(0.957) TCGA-96-A4JK-01 11 108381438 108381438 G C EXPH5 Missense_Mutation p.S1599C 0.24 tolerated(0.1) benign(0.122) TCGA-96-A4JK-01 11 1093633 1093633 A G MUC2 Missense_Mutation p.T1818A 0.25 unknown(0) TCGA-96-A4JK-01 11 1095311 1095311 G A MUC2 Missense_Mutation p.G2044D 0.30 unknown(0) TCGA-96-A4JK-01 11 111839271 111839271 C A DIXDC1 Silent p.P75P 0.24 TCGA-96-A4JK-01 11 113802138 113802138 A G HTR3B Silent p.V82V 0.48 TCGA-96-A4JK-01 11 116692162 116692162 G A APOA4 Silent p.Y204Y 0.61 TCGA-96-A4JK-01 11 118499312 118499312 G T PHLDB1 Missense_Mutation p.E591D 0.34 tolerated(0.16) benign(0.02) TCGA-96-A4JK-01 11 123900667 123900667 T G OR10G8 Missense_Mutation p.L113R 0.63 deleterious(0) probably_damaging(0.999) TCGA-96-A4JK-01 11 123900668 123900668 C A OR10G8 Silent p.L113L 0.62 TCGA-96-A4JK-01 11 124294161 124294161 C A OR8B4 Nonsense_Mutation p.G203* 0.52 TCGA-96-A4JK-01 11 125880513 125880513 G A CDON Silent p.S425S 0.17 TCGA-96-A4JK-01 11 126073357 126073357 C T RPUSD4 Missense_Mutation p.D364N 0.40 deleterious(0.05) benign(0.005) TCGA-96-A4JK-01 11 126134431 126134431 C T SRPR Missense_Mutation p.R510H 0.20 tolerated(0.13) probably_damaging(0.989) TCGA-96-A4JK-01 11 129321400 129321400 G T BARX2 3'UTR 0.54 TCGA-96-A4JK-01 11 1605950 1605950 C A KRTAP5-1 Missense_Mutation p.C177F 0.19 deleterious_low_confidence(0) unknown(0) TCGA-96-A4JK-01 11 1718591 1718591 G C KRTAP5-6 Missense_Mutation p.C39S 0.13 deleterious_low_confidence(0) unknown(0) TCGA-96-A4JK-01 11 21596633 21596633 G A NELL1 3'UTR 0.31 TCGA-96-A4JK-01 11 2991044 2991044 C A NAP1L4 Nonsense_Mutation p.E175* 0.28 TCGA-96-A4JK-01 11 314170 314170 G A IFITM1 5'UTR 0.23 TCGA-96-A4JK-01 11 32997957 32997957 G T QSER1 Missense_Mutation p.W1715C 0.17 deleterious(0) probably_damaging(0.999) TCGA-96-A4JK-01 11 43423076 43423076 G T TTC17 Nonsense_Mutation p.G434* 0.19 TCGA-96-A4JK-01 11 4703387 4703387 C A OR51E2 Missense_Mutation p.K185N 0.28 tolerated(0.2) benign(0.058) TCGA-96-A4JK-01 11 47359003 47359003 G A MYBPC3 Silent p.Y847Y 0.51 TCGA-96-A4JK-01 11 49805392 49805392 G A RP11-707M1.1 RNA 0.22 TCGA-96-A4JK-01 11 50003195 50003195 A T OR4C12 Missense_Mutation p.N281K 0.12 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-96-A4JK-01 11 5068409 5068409 G T OR52J3 Silent p.S218S 0.20 TCGA-96-A4JK-01 11 5730605 5730605 G A TRIM22 Nonsense_Mutation p.W408* 0.29 TCGA-96-A4JK-01 11 5862867 5862867 G A OR52E6 Silent p.F87F 0.23 TCGA-96-A4JK-01 11 61118469 61118469 G T CYB561A3 Missense_Mutation p.D250E 0.48 tolerated(1) benign(0.013) TCGA-96-A4JK-01 11 68452433 68452433 C G GAL Silent p.L14L 0.06 TCGA-96-A4JK-01 11 71238405 71238405 G T KRTAP5-7 Missense_Mutation p.G20V 0.20 unknown(0) TCGA-96-A4JK-01 11 74303678 74303678 G A POLD3 5'UTR 0.33 TCGA-96-A4JK-01 11 89774530 89774530 C T TRIM49C Missense_Mutation p.L391F 0.10 deleterious(0.04) possibly_damaging(0.582) TCGA-96-A4JK-01 12 101017534 101017534 G A GAS2L3 Missense_Mutation p.M317I 0.17 deleterious(0) probably_damaging(0.978) TCGA-96-A4JK-01 12 104682680 104682680 A T TXNRD1 Intron 0.26 TCGA-96-A4JK-01 12 109577855 109577855 C G ACACB Silent p.P215P 0.29 TCGA-96-A4JK-01 12 109690870 109690870 G C ACACB Missense_Mutation p.Q1984H 0.18 deleterious(0.01) probably_damaging(0.929) TCGA-96-A4JK-01 12 111296515 111296515 C G CCDC63 Missense_Mutation p.T102S 0.09 deleterious(0.03) possibly_damaging(0.693) TCGA-96-A4JK-01 12 11149757 11149757 T C TAS2R20 Missense_Mutation p.I240V 0.22 tolerated(0.37) benign(0.007) TCGA-96-A4JK-01 12 112884184 112884184 A G PTPN11 Missense_Mutation p.D40G 0.27 tolerated(0.17) probably_damaging(0.997) TCGA-96-A4JK-01 12 121202754 121202754 G C SPPL3 3'UTR 0.29 TCGA-96-A4JK-01 12 121768476 121768476 C G ANAPC5 Splice_Site p.X345_splice 0.13 TCGA-96-A4JK-01 12 121773443 121773443 C G ANAPC5 Silent p.L281L 0.35 TCGA-96-A4JK-01 12 122181540 122181540 G T TMEM120B Silent p.T25T 0.15 TCGA-96-A4JK-01 12 132414598 132414598 A G PUS1 Missense_Mutation p.D74G 0.37 deleterious(0.04) benign(0.002) TCGA-96-A4JK-01 12 14994028 14994028 G A ART4 Silent p.G68G 0.05 TCGA-96-A4JK-01 12 21349878 21349878 A T SLCO1B1 Splice_Site p.X243_splice 0.14 TCGA-96-A4JK-01 12 29630128 29630128 T A OVCH1 Missense_Mutation p.E428D 0.34 tolerated(0.11) benign(0.282) TCGA-96-A4JK-01 12 31551170 31551170 C A DENND5B Missense_Mutation p.Q1065H 0.15 tolerated(0.09) benign(0.227) TCGA-96-A4JK-01 12 4854750 4854750 C G GALNT8 Missense_Mutation p.P339R 0.38 tolerated(0.13) probably_damaging(0.998) TCGA-96-A4JK-01 12 49433224 49433224 C - KMT2D Frame_Shift_Del p.T2742Hfs*15 0.23 TCGA-96-A4JK-01 12 49745315 49745315 T A DNAJC22 3'UTR 0.30 TCGA-96-A4JK-01 12 50052253 50052253 C G FMNL3 Missense_Mutation p.A193P 0.30 tolerated(0.16) probably_damaging(0.978) TCGA-96-A4JK-01 12 51318701 51318701 C A METTL7A 5'UTR 0.24 TCGA-96-A4JK-01 12 53045583 53045583 C A KRT2 Missense_Mutation p.G115V 0.50 tolerated(0.07) unknown(0) TCGA-96-A4JK-01 12 54063027 54063027 G A ATP5G2 Silent p.A129A 0.20 TCGA-96-A4JK-01 12 55027018 55027018 C A LACRT Splice_Site p.X20_splice 0.25 TCGA-96-A4JK-01 12 56222105 56222105 G C DNAJC14 Missense_Mutation p.T113S 0.20 tolerated_low_confidence(0.22) benign(0.001) TCGA-96-A4JK-01 12 57556254 57556254 G C LRP1 Missense_Mutation p.R786P 0.30 probably_damaging(0.985) TCGA-96-A4JK-01 12 58014167 58014167 G C SLC26A10 Missense_Mutation p.G55A 0.22 deleterious(0) possibly_damaging(0.887) TCGA-96-A4JK-01 12 58220185 58220185 G T CTDSP2 Missense_Mutation p.P119T 0.16 deleterious(0.02) probably_damaging(0.984) TCGA-96-A4JK-01 12 70724244 70724244 G A CNOT2 Silent p.V188V 0.23 TCGA-96-A4JK-01 12 7177221 7177221 G C C1S Missense_Mutation p.D445H 0.19 deleterious(0.01) possibly_damaging(0.537) TCGA-96-A4JK-01 12 7473376 7473376 T C ACSM4 Missense_Mutation p.M326T 0.36 deleterious(0.02) possibly_damaging(0.652) TCGA-96-A4JK-01 12 76741289 76741289 G A BBS10 Missense_Mutation p.S159F 0.28 deleterious(0) benign(0.086) TCGA-96-A4JK-01 12 8328469 8328469 C T ZNF705A Silent p.A83A 0.13 TCGA-96-A4JK-01 12 95689995 95689995 G C VEZT Missense_Mutation p.E598Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-96-A4JK-01 13 24466056 24466056 C A C1QTNF9B Missense_Mutation p.G125V 0.22 deleterious(0) probably_damaging(0.998) TCGA-96-A4JK-01 13 25266934 25266934 T A ATP12A Missense_Mutation p.F432Y 0.10 tolerated(0.25) probably_damaging(0.999) TCGA-96-A4JK-01 13 29855996 29855996 C A MTUS2 Missense_Mutation p.P944T 0.08 deleterious(0) probably_damaging(0.964) TCGA-96-A4JK-01 13 32912607 32912607 T A BRCA2 Missense_Mutation p.F1372Y 0.51 tolerated(0.32) benign(0.043) TCGA-96-A4JK-01 13 37539715 37539715 C T ALG5 Missense_Mutation p.R257Q 0.50 deleterious(0) probably_damaging(0.986) TCGA-96-A4JK-01 13 43491710 43491710 T A EPSTI1 Missense_Mutation p.K247N 0.23 tolerated(0.11) benign(0.334) TCGA-96-A4JK-01 13 78477684 78477684 T C EDNRB Missense_Mutation p.Q271R 0.39 deleterious(0.04) probably_damaging(0.982) TCGA-96-A4JK-01 13 86368153 86368153 G T SLITRK6 Missense_Mutation p.P831T 0.08 deleterious(0) probably_damaging(0.999) TCGA-96-A4JK-01 14 101530916 101530916 G T MIR541 3'Flank 0.40 TCGA-96-A4JK-01 14 102699929 102699929 G C MOK Intron 0.38 TCGA-96-A4JK-01 14 105408882 105408882 C A AHNAK2 Missense_Mutation p.K4302N 0.45 probably_damaging(0.997) TCGA-96-A4JK-01 14 105416307 105416307 C A AHNAK2 Missense_Mutation p.K1827N 0.07 possibly_damaging(0.883) TCGA-96-A4JK-01 14 105692461 105692461 T C BRF1 Silent p.E331E 0.06 TCGA-96-A4JK-01 14 106357048 106357048 G T IGHD5-18 3'Flank 0.28 TCGA-96-A4JK-01 14 106780933 106780933 A T IGHV4-28 Missense_Mutation p.W5R 0.23 deleterious(0.01) benign(0.018) TCGA-96-A4JK-01 14 20019955 20019955 G T POTEM Missense_Mutation p.S89Y 0.04 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-96-A4JK-01 14 20529057 20529057 G A OR4L1 Missense_Mutation p.S285N 0.31 deleterious(0.01) benign(0) TCGA-96-A4JK-01 14 21898981 21898981 T C CHD8 Silent p.T274T 0.24 TCGA-96-A4JK-01 14 23858251 23858251 A T MYH6 Missense_Mutation p.L1331Q 0.30 deleterious(0) probably_damaging(1) TCGA-96-A4JK-01 14 24653594 24653594 C G IPO4 Missense_Mutation p.G556A 0.22 deleterious(0.02) benign(0.318) TCGA-96-A4JK-01 14 30046603 30046603 G T PRKD1 Silent p.I860I 0.27 TCGA-96-A4JK-01 14 62213840 62213840 G C HIF1A 3'UTR 0.13 TCGA-96-A4JK-01 14 65494242 65494242 A C FNTB Missense_Mutation p.H149P 0.34 deleterious(0) probably_damaging(0.998) TCGA-96-A4JK-01 14 68050478 68050478 G A PLEKHH1 Silent p.E1149E 0.19 TCGA-96-A4JK-01 14 73789841 73789841 T A NUMB Missense_Mutation p.K66N 0.09 deleterious(0) benign(0.281) TCGA-96-A4JK-01 14 74489720 74489720 A G CCDC176 Missense_Mutation p.Y53C 0.35 deleterious(0) probably_damaging(0.999) TCGA-96-A4JK-01 14 77709375 77709375 C T TMEM63C Silent p.V439V 0.42 TCGA-96-A4JK-01 14 81993087 81993087 T A SEL1L Silent p.V110V 0.29 TCGA-96-A4JK-01 14 94929360 94929360 G C SERPINA9 3'UTR 0.12 TCGA-96-A4JK-01 14 95560377 95560390 CAGACCGCAGGTCT - DICER1 Frame_Shift_Del p.D1734Pfs*26 0.45 TCGA-96-A4JK-01 14 96858480 96858480 G A AK7 5'UTR 0.24 TCGA-96-A4JK-01 15 100996230 100996230 G C CERS3 Missense_Mutation p.I289M 0.22 deleterious(0.01) possibly_damaging(0.882) TCGA-96-A4JK-01 15 22382644 22382644 C A OR4N4 Missense_Mutation p.P58T 0.40 deleterious(0.03) probably_damaging(0.999) TCGA-96-A4JK-01 15 25296659 25296659 G C SNORD116-1 RNA 0.11 TCGA-96-A4JK-01 15 25474026 25474026 T C SNORD115-33 5'Flank 0.12 TCGA-96-A4JK-01 15 25966968 25966968 T C ATP10A Missense_Mutation p.D400G 0.12 deleterious(0.01) probably_damaging(0.937) TCGA-96-A4JK-01 15 28459846 28459846 C A HERC2 Nonsense_Mutation p.G2105* 0.67 TCGA-96-A4JK-01 15 28459847 28459847 C A HERC2 Missense_Mutation p.L2104F 0.66 possibly_damaging(0.888) TCGA-96-A4JK-01 15 28517403 28517403 G A HERC2 Silent p.I347I 0.34 TCGA-96-A4JK-01 15 31239446 31239446 C T MTMR10 Missense_Mutation p.A479T 0.19 tolerated(0.06) benign(0.048) TCGA-96-A4JK-01 15 32929543 32929543 G A ARHGAP11A Missense_Mutation p.G857R 0.13 tolerated(0.89) benign(0) TCGA-96-A4JK-01 15 35274122 35274122 C A ZNF770 Missense_Mutation p.C505F 0.69 deleterious(0) probably_damaging(0.999) TCGA-96-A4JK-01 15 40628855 40628855 C - C15orf52 Frame_Shift_Del p.Q314Kfs*21 0.25 TCGA-96-A4JK-01 15 45059448 45059448 G A TRIM69 Silent p.L327L 0.29 TCGA-96-A4JK-01 15 48458202 48458202 T A MYEF2 Missense_Mutation p.E151D 0.21 tolerated(0.05) benign(0.38) TCGA-96-A4JK-01 15 49716599 49716599 G A FGF7 Missense_Mutation p.M35I 0.24 tolerated(0.46) possibly_damaging(0.885) TCGA-96-A4JK-01 15 50546336 50546336 C A HDC Silent p.V237V 0.16 TCGA-96-A4JK-01 15 57809040 57809040 G C CGNL1 Missense_Mutation p.M822I 0.29 tolerated(0.2) benign(0.001) TCGA-96-A4JK-01 15 62999375 62999375 A G TLN2 Missense_Mutation p.T699A 0.33 tolerated(0.51) benign(0) TCGA-96-A4JK-01 15 63632604 63632604 C T CA12 Silent p.L210L 0.30 TCGA-96-A4JK-01 15 63904594 63904594 C A HERC1 Missense_Mutation p.Q4752H 0.17 possibly_damaging(0.549) TCGA-96-A4JK-01 15 64982745 64982745 C A OAZ2 Nonsense_Mutation p.E61* 0.18 TCGA-96-A4JK-01 15 65682598 65682598 A T IGDCC4 Missense_Mutation p.L768H 0.19 deleterious(0) probably_damaging(0.999) TCGA-96-A4JK-01 15 68624257 68624257 G A ITGA11 Silent p.H570H 0.38 TCGA-96-A4JK-01 15 68695333 68695333 G C ITGA11 Missense_Mutation p.P30A 0.26 tolerated(0.17) benign(0.038) TCGA-96-A4JK-01 15 74631106 74631106 G T CYP11A1 Missense_Mutation p.L414M 0.15 tolerated(0.14) probably_damaging(1) TCGA-96-A4JK-01 15 75982161 75982161 G A CSPG4 Silent p.C415C 0.24 TCGA-96-A4JK-01 15 89386836 89386836 C G ACAN Silent p.G336G 0.14 TCGA-96-A4JK-01 15 91524260 91524260 C - PRC1 Frame_Shift_Del p.E226Kfs*52 0.19 TCGA-96-A4JK-01 16 22926944 22926944 C T HS3ST2 3'UTR 0.51 TCGA-96-A4JK-01 16 22926954 22926954 C A HS3ST2 3'UTR 0.48 TCGA-96-A4JK-01 16 23676950 23676950 C T DCTN5 Missense_Mutation p.R118C 0.20 deleterious(0) probably_damaging(0.993) TCGA-96-A4JK-01 16 28188607 28188607 G A XPO6 Silent p.F47F 0.17 TCGA-96-A4JK-01 16 28847439 28847439 C G ATXN2L Silent p.P1027P 0.38 TCGA-96-A4JK-01 16 30516736 30516736 G T ITGAL Missense_Mutation p.E773D 0.43 tolerated(0.2) benign(0.034) TCGA-96-A4JK-01 16 31213507 31213507 C T PYCARD Missense_Mutation p.A98T 0.10 tolerated(0.26) benign(0.012) TCGA-96-A4JK-01 16 3455000 3455000 G T ZNF174 Intron 0.34 TCGA-96-A4JK-01 16 70778422 70778422 C A VAC14 Missense_Mutation p.D478Y 0.41 deleterious(0.01) benign(0.068) TCGA-96-A4JK-01 16 70871617 70871617 G C HYDIN Missense_Mutation p.I4406M 0.48 possibly_damaging(0.844) TCGA-96-A4JK-01 16 81929425 81929425 C T PLCG2 Silent p.D362D 0.12 TCGA-96-A4JK-01 16 83711951 83711951 C T CDH13 Missense_Mutation p.P522S 0.42 deleterious(0) probably_damaging(0.999) TCGA-96-A4JK-01 16 87723429 87723429 C A JPH3 Missense_Mutation p.P488Q 0.64 deleterious(0.01) probably_damaging(0.972) TCGA-96-A4JK-01 16 89294009 89294009 G C ZNF778 Missense_Mutation p.R410T 0.24 tolerated(0.6) benign(0.055) TCGA-96-A4JK-01 17 10253876 10253876 C T MYH13 Missense_Mutation p.E381K 0.48 deleterious(0) probably_damaging(0.991) TCGA-96-A4JK-01 17 11572468 11572468 G T DNAH9 Missense_Mutation p.G940V 0.33 benign(0.197) TCGA-96-A4JK-01 17 11985311 11985311 G T MAP2K4 Intron 0.27 TCGA-96-A4JK-01 17 17171218 17171219 - T COPS3 Frame_Shift_Ins p.I141Nfs*4 0.22 TCGA-96-A4JK-01 17 26603702 26603702 C A AC061975.8 5'Flank 0.33 TCGA-96-A4JK-01 17 29283426 29283426 G A ADAP2 Silent p.Q350Q 0.30 TCGA-96-A4JK-01 17 37009984 37009984 A G RPL23 5'UTR 0.37 TCGA-96-A4JK-01 17 37762528 37762528 G A NEUROD2 Missense_Mutation p.R109C 0.34 deleterious(0) probably_damaging(0.93) TCGA-96-A4JK-01 17 39018831 39018831 G T KRT12 Missense_Mutation p.T458N 0.20 tolerated(0.44) possibly_damaging(0.675) TCGA-96-A4JK-01 17 39019849 39019849 C T KRT12 Missense_Mutation p.R328H 0.30 deleterious(0.03) probably_damaging(0.931) TCGA-96-A4JK-01 17 39334101 39334101 C T KRTAP4-2 Missense_Mutation p.G106S 0.31 tolerated(0.11) unknown(0) TCGA-96-A4JK-01 17 39594801 39594801 A G KRT38 Missense_Mutation p.L321P 0.27 deleterious(0) probably_damaging(0.987) TCGA-96-A4JK-01 17 41835998 41835998 G T SOST Missense_Mutation p.P38T 0.21 deleterious(0.04) probably_damaging(0.997) TCGA-96-A4JK-01 17 41939163 41939163 C A CD300LG Intron 0.28 TCGA-96-A4JK-01 17 42475709 42475709 C T GPATCH8 Missense_Mutation p.D1246N 0.18 tolerated(0.61) unknown(0) TCGA-96-A4JK-01 17 42930704 42930704 C G EFTUD2 Missense_Mutation p.D841H 0.31 deleterious(0) probably_damaging(1) TCGA-96-A4JK-01 17 43884450 43884450 C A CRHR1 Silent p.A36A 0.18 TCGA-96-A4JK-01 17 4641724 4641724 T C CXCL16 Missense_Mutation p.M113V 0.60 tolerated(0.46) benign(0.013) TCGA-96-A4JK-01 17 46805974 46805974 A G HOXB13 5'UTR 0.19 TCGA-96-A4JK-01 17 46863677 46863677 C G TTLL6 Missense_Mutation p.R537T 0.25 deleterious(0) possibly_damaging(0.908) TCGA-96-A4JK-01 17 4841824 4841824 C A SLC25A11 Missense_Mutation p.V177F 0.64 tolerated(0.17) benign(0.012) TCGA-96-A4JK-01 17 48437437 48437437 G T XYLT2 Nonsense_Mutation p.E795* 0.27 TCGA-96-A4JK-01 17 56283871 56283871 G A MKS1 Missense_Mutation p.T482I 0.40 deleterious(0) probably_damaging(0.985) TCGA-96-A4JK-01 17 60469282 60469282 C - EFCAB3 Frame_Shift_Del p.K137Sfs*8 0.23 TCGA-96-A4JK-01 17 60865875 60865875 C A MARCH10 Missense_Mutation p.R59I 0.36 deleterious(0) possibly_damaging(0.707) TCGA-96-A4JK-01 17 61950670 61950670 C A CSH2 Missense_Mutation p.A14S 0.10 tolerated(0.09) possibly_damaging(0.72) TCGA-96-A4JK-01 17 61987498 61987498 G A CSHL1 Intron 0.24 TCGA-96-A4JK-01 17 62265574 62265574 C T TEX2 Missense_Mutation p.R800K 0.30 tolerated(0.92) benign(0.002) TCGA-96-A4JK-01 17 64219883 64219883 C T APOH Silent p.L116L 0.10 TCGA-96-A4JK-01 17 66303514 66303514 G A ARSG 5'UTR 0.25 TCGA-96-A4JK-01 17 73262036 73262036 G A MRPS7 3'UTR 0.10 TCGA-96-A4JK-01 17 74936494 74936494 G T MGAT5B Missense_Mutation p.G541V 0.27 deleterious(0) probably_damaging(1) TCGA-96-A4JK-01 17 7578457 7578457 C A TP53 Missense_Mutation p.R158L 0.48 deleterious(0) probably_damaging(0.986) TCGA-96-A4JK-01 17 76989772 76989772 G C CANT1 Missense_Mutation p.Q356E 0.10 tolerated(0.25) benign(0.075) TCGA-96-A4JK-01 17 7755329 7755329 A T KDM6B Missense_Mutation p.E1409V 0.61 probably_damaging(0.995) TCGA-96-A4JK-01 17 7760663 7760663 G C LSMD1 Missense_Mutation p.Q27E 0.13 tolerated_low_confidence(0.06) benign(0) TCGA-96-A4JK-01 17 78059912 78059912 G T CCDC40 Missense_Mutation p.Q782H 0.21 deleterious(0.01) benign(0.139) TCGA-96-A4JK-01 17 78059913 78059913 G T CCDC40 Nonsense_Mutation p.E783* 0.22 TCGA-96-A4JK-01 17 78184437 78184437 C A SGSH Silent p.R441R 0.32 TCGA-96-A4JK-01 17 78319533 78319533 G A RNF213 Silent p.E2466E 0.32 TCGA-96-A4JK-01 17 8013479 8013479 C G ALOXE3 Silent p.T544T 0.64 TCGA-96-A4JK-01 17 80879437 80879437 C T TBCD Missense_Mutation p.S721F 0.26 deleterious(0.01) benign(0.009) TCGA-96-A4JK-01 17 8168282 8168282 G A PFAS Missense_Mutation p.D707N 0.20 tolerated(0.16) possibly_damaging(0.467) TCGA-96-A4JK-01 17 8168321 8168321 G C PFAS Missense_Mutation p.G720R 0.17 deleterious(0) probably_damaging(1) TCGA-96-A4JK-01 17 8168356 8168356 G A PFAS Silent p.K731K 0.14 TCGA-96-A4JK-01 17 8168366 8168366 G C PFAS Missense_Mutation p.D735H 0.11 deleterious(0.01) benign(0.197) TCGA-96-A4JK-01 18 2892109 2892109 C G EMILIN2 Missense_Mutation p.P662A 0.33 tolerated(0.13) benign(0.006) TCGA-96-A4JK-01 18 28991209 28991209 C A DSG4 Missense_Mutation p.T737N 0.12 deleterious(0.04) probably_damaging(0.939) TCGA-96-A4JK-01 18 3253901 3253901 G C MYL12A Missense_Mutation p.D66H 0.09 deleterious(0.03) benign(0.041) TCGA-96-A4JK-01 18 45368232 45368232 C G SMAD2 Missense_Mutation p.G457A 0.17 deleterious(0) possibly_damaging(0.488) TCGA-96-A4JK-01 18 5891856 5891856 C A TMEM200C Missense_Mutation p.M69I 0.14 deleterious(0.01) possibly_damaging(0.708) TCGA-96-A4JK-01 18 60497353 60497353 G A PHLPP1 Silent p.V554V 0.48 TCGA-96-A4JK-01 18 7038921 7038921 C A LAMA1 Missense_Mutation p.R484L 0.28 tolerated(0.28) benign(0.017) TCGA-96-A4JK-01 18 70451118 70451118 A G NETO1 Silent p.Y221Y 0.27 TCGA-96-A4JK-01 18 7231693 7231693 A G LRRC30 Missense_Mutation p.K186R 0.30 tolerated(0.38) benign(0.009) TCGA-96-A4JK-01 18 909509 909509 G A ADCYAP1 Missense_Mutation p.G135E 0.24 deleterious(0) probably_damaging(0.997) TCGA-96-A4JK-01 18 9255462 9255462 G A ANKRD12 Missense_Mutation p.D733N 0.19 tolerated_low_confidence(0.06) possibly_damaging(0.839) TCGA-96-A4JK-01 19 110841 110841 C A OR4F17 Missense_Mutation p.L55M 0.13 deleterious(0.01) possibly_damaging(0.848) TCGA-96-A4JK-01 19 11617158 11617158 C G ECSIT Missense_Mutation p.E379D 0.15 tolerated(0.12) benign(0.141) TCGA-96-A4JK-01 19 1432587 1432587 C T DAZAP1 Missense_Mutation p.P316S 0.32 tolerated(0.06) unknown(0) TCGA-96-A4JK-01 19 15350825 15350825 G A BRD4 Missense_Mutation p.R1060C 0.10 possibly_damaging(0.77) TCGA-96-A4JK-01 19 15918010 15918010 T A OR10H1 Missense_Mutation p.T280S 0.29 deleterious(0.01) benign(0.177) TCGA-96-A4JK-01 19 16860377 16860377 C T NWD1 Silent p.V308V 0.35 TCGA-96-A4JK-01 19 17086862 17086862 C G CPAMD8 Missense_Mutation p.D667H 0.15 deleterious(0) probably_damaging(1) TCGA-96-A4JK-01 19 17442124 17442124 A C ANO8 Missense_Mutation p.V228G 0.14 deleterious(0.01) possibly_damaging(0.767) TCGA-96-A4JK-01 19 20003487 20003487 A T ZNF253 Silent p.R477R 0.31 TCGA-96-A4JK-01 19 20806994 20806995 - T ZNF626 3'UTR 0.21 TCGA-96-A4JK-01 19 2097329 2097329 C T IZUMO4 Missense_Mutation p.P99L 0.36 deleterious(0) probably_damaging(0.991) TCGA-96-A4JK-01 19 22363905 22363905 G A ZNF676 Missense_Mutation p.A205V 0.25 tolerated(0.06) probably_damaging(0.933) TCGA-96-A4JK-01 19 22363906 22363906 C T ZNF676 Missense_Mutation p.A205T 0.26 tolerated(0.07) possibly_damaging(0.904) TCGA-96-A4JK-01 19 2878147 2878147 T G ZNF556 Silent p.P397P 0.30 TCGA-96-A4JK-01 19 33444561 33444561 C A CEP89 Missense_Mutation p.G151V 0.06 tolerated(0.13) benign(0.295) TCGA-96-A4JK-01 19 34706140 34706140 C T LSM14A Missense_Mutation p.P217L 0.70 tolerated(0.05) possibly_damaging(0.908) TCGA-96-A4JK-01 19 35524494 35524494 A T SCN1B Missense_Mutation p.D100V 0.09 deleterious(0) probably_damaging(0.998) TCGA-96-A4JK-01 19 3821386 3821386 A T ZFR2 Missense_Mutation p.L528Q 0.35 tolerated(0.18) benign(0.186) TCGA-96-A4JK-01 19 38976539 38976539 T G RYR1 Silent p.P1748P 0.09 TCGA-96-A4JK-01 19 41388123 41388152 GTGAGATGACAGATGGTGATGGGTGGGGTG - CYP2A7 5'UTR 0.46 TCGA-96-A4JK-01 19 4292510 4292510 A T TMIGD2 3'UTR 0.37 TCGA-96-A4JK-01 19 43766163 43766163 G T PSG9 Missense_Mutation p.S186R 0.10 deleterious(0.03) benign(0.103) TCGA-96-A4JK-01 19 45563703 45563703 A T CLASRP Missense_Mutation p.E256V 0.51 deleterious(0) probably_damaging(1) TCGA-96-A4JK-01 19 46270264 46270264 G A SIX5 Missense_Mutation p.S318F 0.17 deleterious(0) possibly_damaging(0.459) TCGA-96-A4JK-01 19 47204162 47204162 C T PRKD2 Missense_Mutation p.A339T 0.39 tolerated(0.57) benign(0.041) TCGA-96-A4JK-01 19 49253959 49253959 C T FUT1 Missense_Mutation p.E194K 0.23 tolerated(0.06) benign(0.026) TCGA-96-A4JK-01 19 49575508 49575508 C T KCNA7 Missense_Mutation p.C112Y 0.35 tolerated(0.23) benign(0.016) TCGA-96-A4JK-01 19 51628331 51628331 G C SIGLEC9 Missense_Mutation p.G34R 0.11 deleterious(0) probably_damaging(1) TCGA-96-A4JK-01 19 52196135 52196135 C T SPACA6P-AS RNA 0.12 TCGA-96-A4JK-01 19 52620055 52620055 C A ZNF616 Missense_Mutation p.G121V 0.40 tolerated(0.09) benign(0.299) TCGA-96-A4JK-01 19 52620056 52620056 C A ZNF616 Missense_Mutation p.G121C 0.41 tolerated(0.19) benign(0.022) TCGA-96-A4JK-01 19 53005140 53005140 G C ZNF578 Missense_Mutation p.E14D 0.30 tolerated(0.11) probably_damaging(0.953) TCGA-96-A4JK-01 19 53311278 53311278 T A ZNF28 Missense_Mutation p.R42W 0.43 deleterious(0.02) probably_damaging(0.998) TCGA-96-A4JK-01 19 53311279 53311279 A T ZNF28 Nonsense_Mutation p.Y41* 0.43 TCGA-96-A4JK-01 19 53857202 53857202 G C ZNF845 3'UTR 0.45 TCGA-96-A4JK-01 19 54745922 54745922 G T LILRA6 Missense_Mutation p.P112H 0.15 deleterious(0.01) probably_damaging(0.962) TCGA-96-A4JK-01 19 549781 549781 G C GZMM Missense_Mutation p.R255P 0.32 deleterious(0.01) possibly_damaging(0.875) TCGA-96-A4JK-01 19 55112248 55112248 T A LILRA1 Missense_Mutation p.L479Q 0.29 deleterious(0) benign(0.391) TCGA-96-A4JK-01 19 55112291 55112291 C T LILRA1 3'UTR 0.27 TCGA-96-A4JK-01 19 57175628 57175628 C A ZNF835 Silent p.A313A 0.41 TCGA-96-A4JK-01 19 57325713 57325713 G T PEG3 Missense_Mutation p.A1366D 0.27 tolerated(0.58) benign(0.122) TCGA-96-A4JK-01 19 57640097 57640097 G A USP29 Silent p.G18G 0.37 TCGA-96-A4JK-01 19 57909958 57909958 G C ZNF548 Missense_Mutation p.E113D 0.27 deleterious(0.05) benign(0.027) TCGA-96-A4JK-01 19 58863752 58863752 G A A1BG Silent p.A170A 0.29 TCGA-96-A4JK-01 19 6707848 6707848 G A C3 Silent p.F646F 0.30 TCGA-96-A4JK-01 19 8616626 8616626 G T MYO1F Missense_Mutation p.L257M 0.33 tolerated(0.38) benign(0.031) TCGA-96-A4JK-01 19 9010995 9010995 G A MUC16 Missense_Mutation p.R12975W 0.32 possibly_damaging(0.643) TCGA-96-A4JK-01 19 9071910 9071910 T C MUC16 Missense_Mutation p.N5179S 0.24 unknown(0) TCGA-96-A4JK-01 1 101194851 101194851 G T VCAM1 Missense_Mutation p.V373L 0.43 deleterious(0.01) benign(0.424) TCGA-96-A4JK-01 1 10473271 10473271 C T PGD Silent p.I269I 0.06 TCGA-96-A4JK-01 1 109794094 109794094 G C CELSR2 Missense_Mutation p.E465Q 0.53 deleterious(0) probably_damaging(1) TCGA-96-A4JK-01 1 115130517 115130517 C A DENND2C Missense_Mutation p.V830L 0.49 deleterious(0) probably_damaging(0.952) TCGA-96-A4JK-01 1 117509838 117509838 G T PTGFRN Missense_Mutation p.D649Y 0.52 deleterious(0) probably_damaging(1) TCGA-96-A4JK-01 1 120459021 120459021 G A NOTCH2 Silent p.A2108A 0.14 TCGA-96-A4JK-01 1 148594841 148594841 G C NBPF15 3'UTR 0.45 TCGA-96-A4JK-01 1 149857977 149857977 C G HIST2H2BE Missense_Mutation p.E72Q 0.68 deleterious_low_confidence(0.02) possibly_damaging(0.603) TCGA-96-A4JK-01 1 151204823 151204823 C G PIP5K1A Missense_Mutation p.I156M 0.14 deleterious(0) possibly_damaging(0.507) TCGA-96-A4JK-01 1 151209086 151209086 A G PIP5K1A Missense_Mutation p.N331S 0.66 deleterious(0.04) benign(0.065) TCGA-96-A4JK-01 1 153923749 153923749 G A CRTC2 Missense_Mutation p.S464F 0.66 deleterious(0) probably_damaging(0.982) TCGA-96-A4JK-01 1 154233401 154233401 C T UBAP2L Missense_Mutation p.S871F 0.09 deleterious(0) probably_damaging(0.982) TCGA-96-A4JK-01 1 155874261 155874261 C A RIT1 Missense_Mutation p.M107I 0.59 tolerated(0.07) probably_damaging(0.956) TCGA-96-A4JK-01 1 155896528 155896528 T G KIAA0907 Missense_Mutation p.Q207P 0.67 tolerated(0.16) probably_damaging(0.977) TCGA-96-A4JK-01 1 158549406 158549406 G T OR10X1 Missense_Mutation p.P95H 0.54 deleterious(0) probably_damaging(0.999) TCGA-96-A4JK-01 1 158576504 158576504 C T OR10Z1 Silent p.I92I 0.59 TCGA-96-A4JK-01 1 161130542 161130542 C G USP21 Missense_Mutation p.R38G 0.50 deleterious_low_confidence(0.01) benign(0.145) TCGA-96-A4JK-01 1 16535359 16535359 C A ARHGEF19 Missense_Mutation p.R64L 0.54 tolerated_low_confidence(0.05) benign(0.343) TCGA-96-A4JK-01 1 172538185 172538185 C T SUCO Silent p.D253D 0.50 TCGA-96-A4JK-01 1 186022085 186022085 C T HMCN1 Silent p.V2193V 0.18 TCGA-96-A4JK-01 1 197396956 197396956 G C CRB1 Missense_Mutation p.G834A 0.64 deleterious(0.01) probably_damaging(0.999) TCGA-96-A4JK-01 1 207244570 207244570 C T PFKFB2 Silent p.I420I 0.10 TCGA-96-A4JK-01 1 212274141 212274141 A G DTL Silent p.L603L 0.61 TCGA-96-A4JK-01 1 212798649 212798649 G A FAM71A Missense_Mutation p.A144T 0.17 deleterious(0) probably_damaging(0.997) TCGA-96-A4JK-01 1 214169965 214169965 A T PROX1 Silent p.T29T 0.63 TCGA-96-A4JK-01 1 214575060 214575060 C A PTPN14 Missense_Mutation p.D213Y 0.54 deleterious(0) probably_damaging(0.957) TCGA-96-A4JK-01 1 216040449 216040465 TTCTCGGCTCGGTGTAA AC USH2A In_Frame_Del p.F2910_E2915delinsC 0.43 TCGA-96-A4JK-01 1 216040465 216040465 A C USH2A Missense_Mutation p.F2910C 0.40 probably_damaging(0.95) TCGA-96-A4JK-01 1 222801473 222801473 A T MIA3 Missense_Mutation p.D304V 0.12 deleterious(0.03) benign(0.118) TCGA-96-A4JK-01 1 223567961 223567961 C G C1orf65 Missense_Mutation p.Q382E 0.36 tolerated(0.13) benign(0.342) TCGA-96-A4JK-01 1 232941214 232941214 G C MAP10 Missense_Mutation p.E149Q 0.27 deleterious(0.03) possibly_damaging(0.742) TCGA-96-A4JK-01 1 246899337 246899337 G T SCCPDH Missense_Mutation p.D122Y 0.62 deleterious(0) probably_damaging(1) TCGA-96-A4JK-01 1 248112490 248112490 G A OR2L8 Missense_Mutation p.A111T 0.17 tolerated(0.18) benign(0.004) TCGA-96-A4JK-01 1 248224023 248224023 T A OR2L3 Missense_Mutation p.L14I 0.09 deleterious(0.01) benign(0.049) TCGA-96-A4JK-01 1 28920405 28920405 G A RAB42 Missense_Mutation p.E32K 0.57 tolerated(0.05) possibly_damaging(0.69) TCGA-96-A4JK-01 1 34076699 34076699 G A CSMD2 Silent p.T2055T 0.33 TCGA-96-A4JK-01 1 39816667 39816667 G A MACF1 Missense_Mutation p.A1664T 0.50 benign(0.292) TCGA-96-A4JK-01 1 46532627 46532627 T A PIK3R3 Nonsense_Mutation p.K151* 0.52 TCGA-96-A4JK-01 1 47276482 47276482 C T CYP4B1 Silent p.I61I 0.15 TCGA-96-A4JK-01 1 50666745 50666745 C A ELAVL4 Silent p.T349T 0.34 TCGA-96-A4JK-01 1 64707393 64707393 G T UBE2U Missense_Mutation p.Q218H 0.39 deleterious(0.03) possibly_damaging(0.758) TCGA-96-A4JK-01 1 85647930 85647930 C T SYDE2 Missense_Mutation p.E799K 0.40 deleterious(0.02) possibly_damaging(0.698) TCGA-96-A4JK-01 1 92732265 92732265 C T GLMN Missense_Mutation p.E378K 0.16 tolerated(0.08) benign(0.376) TCGA-96-A4JK-01 1 99771789 99771789 G A LPPR4 Silent p.Q505Q 0.23 TCGA-96-A4JK-01 20 11903826 11903826 C T BTBD3 Nonsense_Mutation p.Q361* 0.10 TCGA-96-A4JK-01 20 1902113 1902113 G A SIRPA Missense_Mutation p.C170Y 0.28 deleterious(0) probably_damaging(1) TCGA-96-A4JK-01 20 20258069 20258069 C A C20orf26 Silent p.T921T 0.15 TCGA-96-A4JK-01 20 2290460 2290460 G A TGM3 Silent p.E55E 0.12 TCGA-96-A4JK-01 20 23065005 23065005 G A CD93 Missense_Mutation p.R609W 0.04 deleterious(0) probably_damaging(0.984) TCGA-96-A4JK-01 20 24993576 24993576 C A ACSS1 Splice_Site p.X527_splice 0.15 TCGA-96-A4JK-01 20 31598831 31598831 G A BPIFB2 Silent p.V37V 0.36 TCGA-96-A4JK-01 20 31629806 31629806 G A BPIFB6 Silent p.S391S 0.33 TCGA-96-A4JK-01 20 32379114 32379114 G T ZNF341 Nonsense_Mutation p.E779* 0.32 TCGA-96-A4JK-01 20 33875081 33875081 G A FAM83C Missense_Mutation p.P501S 0.35 deleterious_low_confidence(0) benign(0.035) TCGA-96-A4JK-01 20 33875601 33875601 C A FAM83C Silent p.V327V 0.33 TCGA-96-A4JK-01 20 39978501 39978501 C T LPIN3 Silent p.S242S 0.51 TCGA-96-A4JK-01 20 44675021 44675021 T A SLC12A5 Missense_Mutation p.V601E 0.45 deleterious(0) possibly_damaging(0.774) TCGA-96-A4JK-01 20 5086947 5086947 T G TMEM230 Missense_Mutation p.T100P 0.15 tolerated(0.68) benign(0.341) TCGA-96-A4JK-01 20 56228086 56228086 C T PMEPA1 Intron 0.44 TCGA-96-A4JK-01 20 61528023 61528023 T A DIDO1 Silent p.V638V 0.62 TCGA-96-A4JK-01 21 11039285 11039285 T A BAGE2 RNA 0.03 TCGA-96-A4JK-01 21 22910334 22910334 C G NCAM2 3'UTR 0.46 TCGA-96-A4JK-01 21 45784062 45784062 C A TRPM2 Missense_Mutation p.T107N 0.42 tolerated(0.49) benign(0.08) TCGA-96-A4JK-01 21 47684048 47684048 G A MCM3AP Silent p.Y1106Y 0.43 TCGA-96-A4JK-01 22 18028330 18028330 C G CECR2 Missense_Mutation p.P1097R 0.26 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-96-A4JK-01 22 23237754 23237754 G T IGLL5 Silent p.A175A 0.32 TCGA-96-A4JK-01 22 24982142 24982142 C T FAM211B Silent p.L220L 0.32 TCGA-96-A4JK-01 22 24982347 24982347 G A FAM211B Missense_Mutation p.A152V 0.18 tolerated(0.08) benign(0.004) TCGA-96-A4JK-01 22 26860173 26860173 C G HPS4 Missense_Mutation p.D475H 0.18 deleterious(0.03) possibly_damaging(0.849) TCGA-96-A4JK-01 22 26937210 26937210 C T TPST2 Silent p.T129T 0.10 TCGA-96-A4JK-01 22 36902125 36902125 C A FOXRED2 Silent p.S115S 0.15 TCGA-96-A4JK-01 22 46239636 46239636 G A ATXN10 3'UTR 0.27 TCGA-96-A4JK-01 22 46688798 46688798 C T TTC38 3'UTR 0.21 TCGA-96-A4JK-01 2 100210144 100210144 G T AFF3 Missense_Mutation p.P685H 0.39 deleterious(0) probably_damaging(1) TCGA-96-A4JK-01 2 108910209 108910209 G T SULT1C2 Missense_Mutation p.W29L 0.06 tolerated(0.12) probably_damaging(0.968) TCGA-96-A4JK-01 2 108910210 108910210 G T SULT1C2 Missense_Mutation p.W29C 0.06 deleterious(0.02) possibly_damaging(0.613) TCGA-96-A4JK-01 2 109003808 109003808 G T SULT1C4 Missense_Mutation p.V277L 0.30 deleterious(0) probably_damaging(0.943) TCGA-96-A4JK-01 2 1204904 1204904 C T SNTG2 Missense_Mutation p.T236M 0.56 deleterious(0.01) benign(0.077) TCGA-96-A4JK-01 2 125284922 125284922 G T CNTNAP5 Missense_Mutation p.C512F 0.13 deleterious(0) probably_damaging(1) TCGA-96-A4JK-01 2 138771389 138771389 T - HNMT Frame_Shift_Del p.Q192Rfs*20 0.20 TCGA-96-A4JK-01 2 164467162 164467162 G A FIGN Nonsense_Mutation p.Q394* 0.06 TCGA-96-A4JK-01 2 168103804 168103804 G A XIRP2 Missense_Mutation p.A1968T 0.32 benign(0.034) TCGA-96-A4JK-01 2 172641746 172641746 T C SLC25A12 3'UTR 0.30 TCGA-96-A4JK-01 2 173344774 173344774 C G ITGA6 Nonsense_Mutation p.S515* 0.07 TCGA-96-A4JK-01 2 179403417 179403417 T A TTN Nonsense_Mutation p.K33047* 0.06 TCGA-96-A4JK-01 2 179403418 179403418 C T TTN Silent p.K33046K 0.06 TCGA-96-A4JK-01 2 179433622 179433622 G T TTN Nonsense_Mutation p.S25746* 0.07 TCGA-96-A4JK-01 2 179468980 179468980 T C TTN Missense_Mutation p.N18145S 0.21 TCGA-96-A4JK-01 2 179543209 179543209 T G TTN Missense_Mutation p.K11281T 0.25 TCGA-96-A4JK-01 2 179543213 179543213 G A TTN Missense_Mutation p.P11280S 0.25 TCGA-96-A4JK-01 2 179612322 179612322 G T TTN Intron 0.47 TCGA-96-A4JK-01 2 179650745 179650745 C A TTN Nonsense_Mutation p.E734* 0.20 TCGA-96-A4JK-01 2 179986587 179986587 C A SESTD1 Missense_Mutation p.W451L 0.07 tolerated(0.06) benign(0.024) TCGA-96-A4JK-01 2 185803495 185803495 G T ZNF804A Silent p.V1124V 0.06 TCGA-96-A4JK-01 2 185803496 185803496 C T ZNF804A Missense_Mutation p.L1125F 0.06 tolerated(0.08) benign(0.008) TCGA-96-A4JK-01 2 186673120 186673120 C A FSIP2 Missense_Mutation p.P6452T 0.35 possibly_damaging(0.817) TCGA-96-A4JK-01 2 186678618 186678618 C A FSIP2 Missense_Mutation p.A6814E 0.25 benign(0.016) TCGA-96-A4JK-01 2 187533597 187533597 G T ITGAV Nonsense_Mutation p.G848* 0.28 TCGA-96-A4JK-01 2 204599558 204599558 C T CD28 Missense_Mutation p.P196S 0.39 deleterious(0) probably_damaging(0.991) TCGA-96-A4JK-01 2 209218766 209218766 G T PIKFYVE Missense_Mutation p.V1997L 0.33 deleterious(0.01) possibly_damaging(0.457) TCGA-96-A4JK-01 2 21237372 21237372 G T APOB Missense_Mutation p.Q1264K 0.68 benign(0.057) TCGA-96-A4JK-01 2 216810377 216810377 G A MREG Nonsense_Mutation p.R143* 0.45 TCGA-96-A4JK-01 2 216930169 216930169 G C PECR Missense_Mutation p.T97S 0.13 tolerated(0.75) benign(0.001) TCGA-96-A4JK-01 2 219563962 219563962 A T STK36 Missense_Mutation p.E1232V 0.28 deleterious(0.04) benign(0.001) TCGA-96-A4JK-01 2 220159858 220159858 G T PTPRN Missense_Mutation p.N838K 0.13 deleterious(0) probably_damaging(0.989) TCGA-96-A4JK-01 2 225370713 225370713 G A CUL3 Missense_Mutation p.S389L 0.39 deleterious(0) probably_damaging(0.997) TCGA-96-A4JK-01 2 225695310 225695310 G C DOCK10 Missense_Mutation p.A995G 0.40 deleterious(0) benign(0.097) TCGA-96-A4JK-01 2 233351026 233351026 G A ECEL1 Missense_Mutation p.A113V 0.27 tolerated(0.29) benign(0.039) TCGA-96-A4JK-01 2 241401795 241401795 C T GPC1 Silent p.L171L 0.33 TCGA-96-A4JK-01 2 24533417 24533417 G A ITSN2 Missense_Mutation p.S166L 0.13 deleterious(0.01) possibly_damaging(0.889) TCGA-96-A4JK-01 2 26699107 26699107 T G OTOF Missense_Mutation p.S919R 0.62 tolerated(0.13) benign(0.261) TCGA-96-A4JK-01 2 27503055 27503055 G A DNAJC5G Missense_Mutation p.S181N 0.57 tolerated(0.35) benign(0.008) TCGA-96-A4JK-01 2 29004692 29004692 C G PPP1CB Missense_Mutation p.I168M 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-96-A4JK-01 2 31572669 31572669 C T XDH Missense_Mutation p.G951E 0.58 tolerated(1) probably_damaging(0.989) TCGA-96-A4JK-01 2 38956812 38956812 G C GALM Missense_Mutation p.G250A 0.03 tolerated(0.47) benign(0.004) TCGA-96-A4JK-01 2 39089404 39089404 C G DHX57 Missense_Mutation p.G152A 0.04 tolerated(0.58) benign(0.101) TCGA-96-A4JK-01 2 48010438 48010449 GGCCTCGGCCAG - MSH6 In_Frame_Del p.A25_S28del 0.32 TCGA-96-A4JK-01 2 73676333 73676333 A C ALMS1 Silent p.P892P 0.72 TCGA-96-A4JK-01 2 74756262 74756262 G A AUP1 Silent p.S112S 0.23 TCGA-96-A4JK-01 2 74756367 74756367 G A AUP1 Silent p.A77A 0.17 TCGA-96-A4JK-01 2 76975942 76975942 T C LRRTM4 Missense_Mutation p.E551G 0.66 deleterious_low_confidence(0) benign(0.053) TCGA-96-A4JK-01 2 80529424 80529424 A G LRRTM1 Silent p.Y507Y 0.13 TCGA-96-A4JK-01 2 85581643 85581643 G C RETSAT 5'UTR 0.10 TCGA-96-A4JK-01 2 86676959 86676959 G A KDM3A Nonsense_Mutation p.W72* 0.19 TCGA-96-A4JK-01 2 87042721 87042721 G C CD8B 3'UTR 0.09 TCGA-96-A4JK-01 2 88425854 88425854 C T FABP1 Silent p.E27E 0.13 TCGA-96-A4JK-01 2 89327187 89327187 C A IGKV3-11 5'UTR 0.27 TCGA-96-A4JK-01 2 90229422 90229422 C T IGKV1D-42 Missense_Mutation p.S81L 0.46 deleterious(0) benign(0.124) TCGA-96-A4JK-01 3 100951677 100951677 A G IMPG2 Missense_Mutation p.C1061R 0.12 deleterious(0) probably_damaging(0.999) TCGA-96-A4JK-01 3 101085283 101085283 C A SENP7 Missense_Mutation p.A437S 0.19 tolerated(0.13) possibly_damaging(0.752) TCGA-96-A4JK-01 3 101284813 101284813 C T TRMT10C Silent p.N396N 0.07 TCGA-96-A4JK-01 3 101390019 101390019 C T ZBTB11 Missense_Mutation p.E245K 0.15 deleterious(0) probably_damaging(1) TCGA-96-A4JK-01 3 108626870 108626870 T A GUCA1C Nonstop_Mutation p.*210Lext*2 0.37 TCGA-96-A4JK-01 3 111604249 111604249 T A PHLDB2 Missense_Mutation p.M442K 0.59 deleterious(0) possibly_damaging(0.771) TCGA-96-A4JK-01 3 111782446 111782446 G T TMPRSS7 Missense_Mutation p.D382Y 0.47 deleterious(0) probably_damaging(0.994) TCGA-96-A4JK-01 3 112255285 112255285 C T ATG3 Intron 0.09 TCGA-96-A4JK-01 3 118621640 118621640 C A IGSF11 Missense_Mutation p.L341F 0.43 tolerated(0.74) benign(0.367) TCGA-96-A4JK-01 3 119325742 119325742 G C PLA1A Missense_Mutation p.Q65H 0.21 deleterious(0.04) benign(0.13) TCGA-96-A4JK-01 3 119347555 119347555 C T PLA1A Nonsense_Mutation p.Q377* 0.11 TCGA-96-A4JK-01 3 119449114 119449114 G A MAATS1 Missense_Mutation p.R303H 0.28 deleterious(0) probably_damaging(0.992) TCGA-96-A4JK-01 3 119462999 119462999 G T MAATS1 Missense_Mutation p.V620L 0.13 tolerated(0.2) benign(0.03) TCGA-96-A4JK-01 3 128181440 128181440 A C DNAJB8 Missense_Mutation p.S217A 0.09 deleterious(0.02) probably_damaging(0.978) TCGA-96-A4JK-01 3 128758645 128758645 C G EFCC1 Missense_Mutation p.A584G 0.17 tolerated(0.07) benign(0.006) TCGA-96-A4JK-01 3 129112074 129112074 G A SNORA7B 3'Flank 0.19 TCGA-96-A4JK-01 3 130281943 130281943 G C COL6A6 Silent p.V32V 0.05 TCGA-96-A4JK-01 3 130672737 130672737 C T ATP2C1 Nonsense_Mutation p.Q236* 0.22 TCGA-96-A4JK-01 3 137813758 137813758 C G DZIP1L Missense_Mutation p.W218C 0.25 deleterious(0.04) probably_damaging(0.956) TCGA-96-A4JK-01 3 142274796 142274796 G A ATR Missense_Mutation p.S755F 0.15 tolerated(0.16) benign(0.002) TCGA-96-A4JK-01 3 142522843 142522843 G A TRPC1 Silent p.L594L 0.16 TCGA-96-A4JK-01 3 148930371 148930371 C T CP Silent p.P87P 0.10 TCGA-96-A4JK-01 3 149468566 149468566 G A COMMD2 Nonsense_Mutation p.Q101* 0.10 TCGA-96-A4JK-01 3 15475856 15475856 G T EAF1 Missense_Mutation p.A113S 0.45 tolerated(0.12) benign(0.053) TCGA-96-A4JK-01 3 154862237 154862237 T G MME Silent p.A469A 0.09 TCGA-96-A4JK-01 3 165547536 165547536 G T BCHE Missense_Mutation p.P429H 0.11 deleterious(0) probably_damaging(0.999) TCGA-96-A4JK-01 3 172080420 172080420 T A FNDC3B Intron 0.13 TCGA-96-A4JK-01 3 172766738 172766738 C T SPATA16 Splice_Site p.X253_splice 0.47 TCGA-96-A4JK-01 3 178742781 178742781 T C ZMAT3 3'UTR 0.18 TCGA-96-A4JK-01 3 183705701 183705701 C G ABCC5 Missense_Mutation p.E150Q 0.05 tolerated(0.73) benign(0.01) TCGA-96-A4JK-01 3 183905986 183905986 G T ABCF3 Silent p.V209V 0.13 TCGA-96-A4JK-01 3 184039743 184039743 G T EIF4G1 Missense_Mutation p.M464I 0.05 tolerated(0.69) benign(0) TCGA-96-A4JK-01 3 185337233 185337233 C G SENP2 Silent p.L463L 0.06 TCGA-96-A4JK-01 3 186395133 186395133 A T HRG Missense_Mutation p.S347C 0.42 tolerated_low_confidence(0.12) possibly_damaging(0.7) TCGA-96-A4JK-01 3 186953426 186953426 G T MASP1 3'UTR 0.19 TCGA-96-A4JK-01 3 187009440 187009440 C T MASP1 5'UTR 0.27 TCGA-96-A4JK-01 3 192517149 192517149 C G MB21D2 Missense_Mutation p.V168L 0.21 tolerated(0.43) benign(0.037) TCGA-96-A4JK-01 3 46008633 46008633 C A FYCO1 Missense_Mutation p.R731S 0.41 tolerated(0.65) benign(0.08) TCGA-96-A4JK-01 3 49699785 49699785 G A BSN Missense_Mutation p.E3503K 0.18 unknown(0) TCGA-96-A4JK-01 3 51429407 51429407 G C RBM15B Missense_Mutation p.A193P 0.27 deleterious(0) possibly_damaging(0.837) TCGA-96-A4JK-01 3 51673609 51673609 A T RAD54L2 Missense_Mutation p.T679S 0.33 tolerated(0.5) benign(0.004) TCGA-96-A4JK-01 3 54952424 54952424 C G LRTM1 3'UTR 0.23 TCGA-96-A4JK-01 3 66428279 66428279 G C SLC25A26 3'UTR 0.07 TCGA-96-A4JK-01 3 69082797 69082797 G A TMF1 Missense_Mutation p.T768I 0.28 deleterious(0) possibly_damaging(0.887) TCGA-96-A4JK-01 3 71830715 71830715 C A PROK2 Missense_Mutation p.G42V 0.19 tolerated(0.35) benign(0.124) TCGA-96-A4JK-01 3 98002538 98002538 T G OR5H2 Silent p.S269S 0.11 TCGA-96-A4JK-01 3 98002539 98002539 C A OR5H2 Missense_Mutation p.P270T 0.11 tolerated(0.62) benign(0.026) TCGA-96-A4JK-01 3 98073049 98073049 A G OR5K4 Missense_Mutation p.M118V 0.56 deleterious(0.01) possibly_damaging(0.45) TCGA-96-A4JK-01 4 103516128 103516128 G C NFKB1 Silent p.G430G 0.65 TCGA-96-A4JK-01 4 115856422 115856422 G T NDST4 Silent p.P492P 0.42 TCGA-96-A4JK-01 4 151818915 151818915 C T LRBA Missense_Mutation p.M660I 0.19 tolerated(0.15) benign(0.002) TCGA-96-A4JK-01 4 153332852 153332852 C A FBXW7 Missense_Mutation p.R35L 0.49 deleterious_low_confidence(0) unknown(0) TCGA-96-A4JK-01 4 153896420 153896420 G A FHDC1 Silent p.Q659Q 0.28 TCGA-96-A4JK-01 4 154507398 154507398 G C KIAA0922 Missense_Mutation p.G450A 0.39 deleterious(0) probably_damaging(0.987) TCGA-96-A4JK-01 4 15835891 15835891 C A CD38 Missense_Mutation p.P184H 0.52 deleterious(0.01) probably_damaging(0.987) TCGA-96-A4JK-01 4 16164910 16164910 T C TAPT1 3'UTR 0.58 TCGA-96-A4JK-01 4 164394256 164394257 - A TKTL2 Frame_Shift_Ins p.G211Wfs*11 0.35 TCGA-96-A4JK-01 4 167833895 167833895 C A SPOCK3 Splice_Site p.X120_splice 0.50 TCGA-96-A4JK-01 4 169196503 169196503 G T DDX60 Missense_Mutation p.T766K 0.34 tolerated(0.07) probably_damaging(0.958) TCGA-96-A4JK-01 4 187524189 187524189 C A FAT1 Splice_Site p.X3784_splice 0.52 TCGA-96-A4JK-01 4 38016453 38016453 G T TBC1D1 Missense_Mutation p.R247S 0.53 tolerated(0.14) benign(0.118) TCGA-96-A4JK-01 4 40123418 40123418 G C N4BP2 Missense_Mutation p.K1229N 0.14 tolerated(0.08) benign(0.038) TCGA-96-A4JK-01 4 46252587 46252587 T A GABRA2 Missense_Mutation p.N365I 0.48 tolerated(0.08) possibly_damaging(0.845) TCGA-96-A4JK-01 4 56820435 56820435 C A CEP135 Missense_Mutation p.L120M 0.55 deleterious(0) probably_damaging(1) TCGA-96-A4JK-01 4 62775297 62775297 C A LPHN3 Missense_Mutation p.A568D 0.41 deleterious(0.01) probably_damaging(0.982) TCGA-96-A4JK-01 4 66270188 66270188 G C EPHA5 Missense_Mutation p.A565G 0.33 tolerated(0.44) benign(0.006) TCGA-96-A4JK-01 4 6865062 6865062 G T KIAA0232 Missense_Mutation p.G985W 0.11 deleterious(0) probably_damaging(1) TCGA-96-A4JK-01 4 71346768 71346768 C A MUC7 Missense_Mutation p.P103T 0.40 tolerated(0.2) benign(0.35) TCGA-96-A4JK-01 4 73175206 73175206 T C ADAMTS3 Missense_Mutation p.N696S 0.31 tolerated(0.77) benign(0.001) TCGA-96-A4JK-01 5 11346662 11346662 C A CTNND2 Missense_Mutation p.A484S 0.07 tolerated(0.31) benign(0.002) TCGA-96-A4JK-01 5 114513528 114513528 C A TRIM36 Intron 0.42 TCGA-96-A4JK-01 5 126754893 126754893 G A MEGF10 Missense_Mutation p.V463I 0.51 tolerated(0.26) benign(0.001) TCGA-96-A4JK-01 5 129019876 129019876 C A ADAMTS19 Missense_Mutation p.L904I 0.48 tolerated(0.25) benign(0.004) TCGA-96-A4JK-01 5 140187689 140187689 G T PCDHA4 Missense_Mutation p.G306V 0.46 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-96-A4JK-01 5 140201463 140201463 C A PCDHA5 Missense_Mutation p.P35T 0.46 deleterious_low_confidence(0.01) benign(0.33) TCGA-96-A4JK-01 5 140221020 140221020 G C PCDHA8 Missense_Mutation p.E38D 0.40 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-96-A4JK-01 5 140515513 140515513 C G PCDHB5 Missense_Mutation p.T166S 0.42 tolerated_low_confidence(1) benign(0.002) TCGA-96-A4JK-01 5 14316673 14316673 C T TRIO Missense_Mutation p.P518S 0.13 benign(0.141) TCGA-96-A4JK-01 5 14316676 14316676 G A TRIO Missense_Mutation p.G519S 0.12 benign(0.17) TCGA-96-A4JK-01 5 147582636 147582636 G C SPINK6 5'UTR 0.19 TCGA-96-A4JK-01 5 150660702 150660702 G T SLC36A3 Missense_Mutation p.F380L 0.30 tolerated(0.18) benign(0.036) TCGA-96-A4JK-01 5 176684080 176684080 G T NSD1 Missense_Mutation p.G1632C 0.47 deleterious(0.01) possibly_damaging(0.658) TCGA-96-A4JK-01 5 26890061 26890061 G T CDH9 Missense_Mutation p.P466T 0.15 tolerated(0.07) benign(0.26) TCGA-96-A4JK-01 5 35618095 35618095 G A SPEF2 5'UTR 0.27 TCGA-96-A4JK-01 5 35697868 35697868 T C SPEF2 Missense_Mutation p.L705P 0.52 deleterious(0) probably_damaging(1) TCGA-96-A4JK-01 5 40762875 40762875 T C PRKAA1 3'UTR 0.11 TCGA-96-A4JK-01 5 42718669 42718669 G C GHR Missense_Mutation p.D354H 0.60 deleterious(0) probably_damaging(0.982) TCGA-96-A4JK-01 5 45262321 45262321 G A HCN1 Missense_Mutation p.S792L 0.40 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-96-A4JK-01 5 66462203 66462203 G A MAST4 Missense_Mutation p.R2399Q 0.23 benign(0.043) TCGA-96-A4JK-01 5 68485428 68485428 C T CENPH 5'UTR 0.70 TCGA-96-A4JK-01 5 71752256 71752256 G C ZNF366 Missense_Mutation p.S500C 0.44 deleterious(0) probably_damaging(0.941) TCGA-96-A4JK-01 5 82940236 82940236 A G HAPLN1 Missense_Mutation p.W241R 0.46 tolerated(1) benign(0) TCGA-96-A4JK-01 5 85913815 85913815 T A COX7C 5'UTR 0.14 TCGA-96-A4JK-01 6 10410451 10410451 G A TFAP2A Missense_Mutation p.P55S 0.16 tolerated(0.08) probably_damaging(0.998) TCGA-96-A4JK-01 6 10419720 10419720 G A TFAP2A 5'Flank 0.53 TCGA-96-A4JK-01 6 108843609 108843609 G T LACE1 Missense_Mutation p.G476V 0.23 deleterious(0.01) possibly_damaging(0.544) TCGA-96-A4JK-01 6 108843610 108843610 A T LACE1 Silent p.G476G 0.23 TCGA-96-A4JK-01 6 114379337 114379337 G T HS3ST5 Missense_Mutation p.P42H 0.43 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-96-A4JK-01 6 116833159 116833159 C A FAM26E Silent p.L100L 0.28 TCGA-96-A4JK-01 6 117650609 117650609 G T ROS1 Missense_Mutation p.A1750D 0.23 deleterious(0.01) benign(0.111) TCGA-96-A4JK-01 6 117686238 117686238 G C ROS1 Missense_Mutation p.R1035G 0.23 deleterious(0) possibly_damaging(0.758) TCGA-96-A4JK-01 6 119341251 119341251 C G FAM184A Silent p.S408S 0.36 TCGA-96-A4JK-01 6 119501086 119501086 G A MAN1A1 Silent p.D620D 0.32 TCGA-96-A4JK-01 6 127796464 127796464 C T SOGA3 Missense_Mutation p.A903T 0.13 tolerated(0.16) benign(0.019) TCGA-96-A4JK-01 6 133097552 133097552 C G SLC18B1 Missense_Mutation p.G271A 0.20 tolerated(0.13) benign(0.259) TCGA-96-A4JK-01 6 136560661 136560661 G A MTFR2 Missense_Mutation p.P271L 0.09 deleterious(0.04) probably_damaging(0.994) TCGA-96-A4JK-01 6 137476147 137476147 C G IL22RA2 Missense_Mutation p.V135L 0.30 deleterious(0) probably_damaging(1) TCGA-96-A4JK-01 6 146755028 146755028 C T GRM1 Missense_Mutation p.S894L 0.29 deleterious(0) benign(0.211) TCGA-96-A4JK-01 6 151917712 151917712 G T CCDC170 Missense_Mutation p.K570N 0.20 deleterious(0) probably_damaging(0.967) TCGA-96-A4JK-01 6 152419984 152419984 G C ESR1 Silent p.G557G 0.34 TCGA-96-A4JK-01 6 152674817 152674817 C A SYNE1 Missense_Mutation p.Q3663H 0.32 probably_damaging(0.998) TCGA-96-A4JK-01 6 15627652 15627652 T A DTNBP1 Missense_Mutation p.S93C 0.43 deleterious(0.01) possibly_damaging(0.866) TCGA-96-A4JK-01 6 25862648 25862648 T - SLC17A3 Frame_Shift_Del p.Y39Lfs*3 0.38 TCGA-96-A4JK-01 6 26234871 26234871 G A HIST1H1D Silent p.T97T 0.17 TCGA-96-A4JK-01 6 28120122 28120122 A T ZKSCAN8 Missense_Mutation p.R245S 0.46 deleterious(0.02) benign(0.004) TCGA-96-A4JK-01 6 29627176 29627176 C T MOG Missense_Mutation p.P57S 0.48 deleterious(0.01) probably_damaging(0.946) TCGA-96-A4JK-01 6 31238921 31238921 T A HLA-C Missense_Mutation p.Y183F 0.25 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-96-A4JK-01 6 31324015 31324015 T A HLA-B Missense_Mutation p.Y183F 0.20 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-96-A4JK-01 6 31864731 31864731 C A EHMT2 Silent p.L26L 0.45 TCGA-96-A4JK-01 6 31948495 31948495 C A STK19 Silent p.L326L 0.07 TCGA-96-A4JK-01 6 32096003 32096003 A - ATF6B 5'UTR 0.29 TCGA-96-A4JK-01 6 33281525 33281525 C A TAPBP Missense_Mutation p.G52W 0.55 deleterious(0.04) benign(0.053) TCGA-96-A4JK-01 6 33653248 33653248 A G ITPR3 Missense_Mutation p.N1807S 0.13 tolerated(0.12) benign(0.157) TCGA-96-A4JK-01 6 34100791 34100791 G C GRM4 Silent p.V161V 0.38 TCGA-96-A4JK-01 6 35207610 35207610 A T SCUBE3 Missense_Mutation p.K304M 0.59 deleterious(0.01) possibly_damaging(0.886) TCGA-96-A4JK-01 6 36178083 36178083 G T BRPF3 Nonsense_Mutation p.E653* 0.08 TCGA-96-A4JK-01 6 36294310 36294310 C G C6orf222 Missense_Mutation p.R338P 0.55 deleterious(0.03) probably_damaging(0.933) TCGA-96-A4JK-01 6 36294311 36294311 G A C6orf222 Missense_Mutation p.R338W 0.58 tolerated(0.06) probably_damaging(0.942) TCGA-96-A4JK-01 6 38891926 38891926 G A DNAH8 Silent p.V3433V 0.06 TCGA-96-A4JK-01 6 45515135 45515135 C T RUNX2 3'UTR 0.12 TCGA-96-A4JK-01 6 45870892 45870892 G C CLIC5 Missense_Mutation p.T389S 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-96-A4JK-01 6 45882128 45882128 G C CLIC5 Missense_Mutation p.T301S 0.44 tolerated(0.05) benign(0.133) TCGA-96-A4JK-01 6 54212165 54212165 G T TINAG Missense_Mutation p.S250I 0.31 deleterious(0) probably_damaging(0.914) TCGA-96-A4JK-01 6 71298435 71298435 A G C6orf57 3'UTR 0.06 TCGA-96-A4JK-01 6 74516703 74516703 G T CD109 Missense_Mutation p.V1033L 0.20 deleterious(0) possibly_damaging(0.785) TCGA-96-A4JK-01 6 74517936 74517936 C G CD109 Missense_Mutation p.A1107G 0.28 tolerated(0.05) possibly_damaging(0.844) TCGA-96-A4JK-01 6 76421102 76421102 A T SENP6 Missense_Mutation p.Q960L 0.39 tolerated(0.07) probably_damaging(0.951) TCGA-96-A4JK-01 6 90024794 90024794 G A GABRR2 Nonsense_Mutation p.Q31* 0.05 TCGA-96-A4JK-01 6 90024795 90024795 C T GABRR2 Silent p.G30G 0.06 TCGA-96-A4JK-01 6 90481312 90481317 ATTCAT - MDN1 In_Frame_Del p.M703_N704del 0.19 TCGA-96-A4JK-01 6 97052739 97052739 G T FHL5 Silent p.T91T 0.25 TCGA-96-A4JK-01 7 103214695 103214695 T C RELN Missense_Mutation p.D1452G 0.40 tolerated(0.07) probably_damaging(0.985) TCGA-96-A4JK-01 7 103338515 103338515 T A RELN Missense_Mutation p.I310F 0.49 deleterious(0.01) possibly_damaging(0.737) TCGA-96-A4JK-01 7 11486873 11486873 T C THSD7A Silent p.R928R 0.31 TCGA-96-A4JK-01 7 11514124 11514124 A T THSD7A Missense_Mutation p.Y697N 0.29 deleterious(0) probably_damaging(0.99) TCGA-96-A4JK-01 7 120590890 120590890 G C ING3 5'UTR 0.34 TCGA-96-A4JK-01 7 120965469 120965470 - ACCA WNT16 5'Flank 0.24 TCGA-96-A4JK-01 7 123257730 123257730 A T ASB15 Missense_Mutation p.L130F 0.11 deleterious(0.02) possibly_damaging(0.738) TCGA-96-A4JK-01 7 126086200 126086200 C T GRM8 Missense_Mutation p.C886Y 0.30 deleterious(0) probably_damaging(0.991) TCGA-96-A4JK-01 7 127222222 127222222 T C GCC1 Missense_Mutation p.N725S 0.35 deleterious(0) probably_damaging(0.999) TCGA-96-A4JK-01 7 131870222 131870222 C A PLXNA4 Missense_Mutation p.R998S 0.23 tolerated(1) benign(0.02) TCGA-96-A4JK-01 7 131870223 131870223 C A PLXNA4 Splice_Site p.X998_splice 0.23 TCGA-96-A4JK-01 7 133868542 133868542 C A LRGUK Missense_Mutation p.A424D 0.32 deleterious(0.04) possibly_damaging(0.521) TCGA-96-A4JK-01 7 134133187 134133187 C G AKR1B1 Missense_Mutation p.G204A 0.17 deleterious(0.01) possibly_damaging(0.786) TCGA-96-A4JK-01 7 136700697 136700697 C T CHRM2 Missense_Mutation p.A362V 0.33 tolerated(0.12) possibly_damaging(0.619) TCGA-96-A4JK-01 7 138313072 138313072 C A SVOPL Silent p.L300L 0.28 TCGA-96-A4JK-01 7 139801910 139801910 T A KDM7A Silent p.P493P 0.29 TCGA-96-A4JK-01 7 141736774 141736774 A T MGAM Missense_Mutation p.H743L 0.33 tolerated(0.09) possibly_damaging(0.783) TCGA-96-A4JK-01 7 141755419 141755419 C A MGAM Missense_Mutation p.L1126I 0.31 deleterious(0) possibly_damaging(0.578) TCGA-96-A4JK-01 7 142139421 142139421 G C TRBV7-6 Missense_Mutation p.F68L 0.32 tolerated(0.11) benign(0.426) TCGA-96-A4JK-01 7 142880578 142880578 G A TAS2R39 Missense_Mutation p.D23N 0.28 tolerated(0.67) benign(0.006) TCGA-96-A4JK-01 7 143028389 143028389 A T CLCN1 Silent p.L348L 0.26 TCGA-96-A4JK-01 7 148876344 148876344 C T ZNF398 Silent p.C460C 0.28 TCGA-96-A4JK-01 7 150695524 150695524 G A NOS3 Missense_Mutation p.R221Q 0.32 deleterious(0.03) benign(0.037) TCGA-96-A4JK-01 7 150698661 150698661 G A NOS3 Silent p.K486K 0.06 TCGA-96-A4JK-01 7 150911184 150911184 C A ABCF2 Missense_Mutation p.V610L 0.22 tolerated(0.57) benign(0.001) TCGA-96-A4JK-01 7 150936192 150936192 G T SMARCD3 Silent p.T483T 0.06 TCGA-96-A4JK-01 7 151874228 151874228 T A KMT2C Missense_Mutation p.K2770N 0.08 probably_damaging(0.999) TCGA-96-A4JK-01 7 157414162 157414162 C G PTPRN2 Missense_Mutation p.E746Q 0.14 tolerated(0.14) benign(0.38) TCGA-96-A4JK-01 7 17833830 17833830 T C SNX13 Missense_Mutation p.R905G 0.30 deleterious(0) possibly_damaging(0.682) TCGA-96-A4JK-01 7 20691084 20691084 G A ABCB5 Silent p.R458R 0.25 TCGA-96-A4JK-01 7 20691097 20691097 C G ABCB5 Missense_Mutation p.H463D 0.30 tolerated(0.2) benign(0.098) TCGA-96-A4JK-01 7 38431428 38431428 G C AMPH Missense_Mutation p.A600G 0.09 tolerated(0.32) benign(0.003) TCGA-96-A4JK-01 7 43546761 43546761 C A HECW1 Silent p.A1219A 0.20 TCGA-96-A4JK-01 7 45141670 45141670 C A TBRG4 Splice_Site p.X441_splice 0.16 TCGA-96-A4JK-01 7 47407989 47407989 C A TNS3 Missense_Mutation p.G752C 0.24 tolerated(0.06) benign(0.017) TCGA-96-A4JK-01 7 50367351 50367351 T G IKZF1 Missense_Mutation p.V53G 0.28 tolerated(0.34) benign(0.002) TCGA-96-A4JK-01 7 54610410 54610410 C G VSTM2A 5'UTR 0.22 TCGA-96-A4JK-01 7 54610426 54610426 G T VSTM2A Translation_Start_Site p.M1? 0.28 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-96-A4JK-01 7 5567494 5567494 G A ACTB Missense_Mutation p.S338F 0.32 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-96-A4JK-01 7 57188235 57188235 G T ZNF479 Missense_Mutation p.P296H 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-96-A4JK-01 7 71252778 71252778 G T CALN1 Silent p.L256L 0.24 TCGA-96-A4JK-01 7 7278190 7278190 A G C1GALT1 Missense_Mutation p.I175M 0.33 deleterious(0) possibly_damaging(0.858) TCGA-96-A4JK-01 7 74564132 74564132 G T GTF2IRD2B Missense_Mutation p.A627S 0.16 tolerated(0.41) benign(0.049) TCGA-96-A4JK-01 7 7495708 7495708 C A COL28A1 Missense_Mutation p.M446I 0.36 tolerated(0.55) benign(0.001) TCGA-96-A4JK-01 7 82595563 82595563 A T PCLO Missense_Mutation p.S1181T 0.33 unknown(0) TCGA-96-A4JK-01 7 87465564 87465564 C G SLC25A40 Nonstop_Mutation p.*339Yext*1 0.29 TCGA-96-A4JK-01 7 8791169 8791169 A G NXPH1 Missense_Mutation p.I196V 0.41 tolerated(1) benign(0.009) TCGA-96-A4JK-01 7 88956782 88956782 C T ZNF804B Missense_Mutation p.S125F 0.33 deleterious(0) probably_damaging(0.999) TCGA-96-A4JK-01 7 88963596 88963596 C A ZNF804B Missense_Mutation p.H434N 0.16 tolerated(0.09) benign(0.411) TCGA-96-A4JK-01 7 90006820 90006820 G T GTPBP10 Splice_Site p.X198_splice 0.32 TCGA-96-A4JK-01 7 92818435 92818435 T A HEPACAM2 3'UTR 0.33 TCGA-96-A4JK-01 8 101281134 101281134 C T RNF19A Missense_Mutation p.R357Q 0.39 deleterious(0.03) probably_damaging(0.988) TCGA-96-A4JK-01 8 131795983 131795983 T A ADCY8 Silent p.I1074I 0.63 TCGA-96-A4JK-01 8 145001718 145001718 C A PLEC Missense_Mutation p.G1343C 0.45 unknown(0) TCGA-96-A4JK-01 8 28186655 28186655 C A PNOC 5'UTR 0.21 TCGA-96-A4JK-01 8 43212115 43212115 G T POTEA Intron 0.22 TCGA-96-A4JK-01 8 48866205 48866205 G C PRKDC Missense_Mutation p.C232W 0.11 possibly_damaging(0.673) TCGA-96-A4JK-01 8 53852949 53852949 C A NPBWR1 Missense_Mutation p.A161D 0.32 deleterious(0) probably_damaging(0.966) TCGA-96-A4JK-01 8 59728121 59728121 G C TOX Missense_Mutation p.P390A 0.13 tolerated(0.36) benign(0.002) TCGA-96-A4JK-01 8 62366714 62366714 C T CLVS1 Silent p.A215A 0.21 TCGA-96-A4JK-01 8 63659620 63659620 G A NKAIN3 Missense_Mutation p.V135I 0.35 tolerated(0.13) benign(0.309) TCGA-96-A4JK-01 8 73921159 73921159 G T TERF1 Missense_Mutation p.R13L 0.43 deleterious_low_confidence(0.03) benign(0.046) TCGA-96-A4JK-01 8 77775565 77775565 G C ZFHX4 Missense_Mutation p.E3205D 0.46 probably_damaging(0.979) TCGA-96-A4JK-01 8 77775566 77775566 G C ZFHX4 Missense_Mutation p.E3206Q 0.47 possibly_damaging(0.851) TCGA-96-A4JK-01 8 82357097 82357097 T A PMP2 Silent p.L67L 0.37 TCGA-96-A4JK-01 8 89130936 89130936 C - MMP16 Frame_Shift_Del p.I289Yfs*62 0.34 TCGA-96-A4JK-01 8 93088329 93088329 C A RUNX1T1 Intron 0.20 TCGA-96-A4JK-01 8 95158348 95158348 C A CDH17 Missense_Mutation p.D659Y 0.32 deleterious(0) probably_damaging(1) TCGA-96-A4JK-01 8 99162829 99162829 G T POP1 Silent p.A673A 0.33 TCGA-96-A4JK-01 9 104433384 104433384 A T GRIN3A Missense_Mutation p.L437Q 0.21 deleterious(0) probably_damaging(0.965) TCGA-96-A4JK-01 9 107574971 107574971 C G ABCA1 Missense_Mutation p.D1312H 0.30 tolerated(0.07) possibly_damaging(0.497) TCGA-96-A4JK-01 9 115759723 115759723 T C ZNF883 RNA 0.17 TCGA-96-A4JK-01 9 116356736 116356736 G T RGS3 Missense_Mutation p.G1036V 0.32 deleterious(0) possibly_damaging(0.703) TCGA-96-A4JK-01 9 116356737 116356737 G T RGS3 Silent p.G1036G 0.33 TCGA-96-A4JK-01 9 117714 117714 C T FOXD4 Missense_Mutation p.D136N 0.35 tolerated(0.31) benign(0.029) TCGA-96-A4JK-01 9 127245143 127245143 C G NR5A1 Missense_Mutation p.R427P 0.09 deleterious(0) probably_damaging(0.938) TCGA-96-A4JK-01 9 133947010 133947010 C T LAMC3 Missense_Mutation p.P1070L 0.28 tolerated(0.07) benign(0.001) TCGA-96-A4JK-01 9 133951287 133951287 C A LAMC3 Nonsense_Mutation p.Y1188* 0.35 TCGA-96-A4JK-01 9 135739081 135739081 C T AK8 Missense_Mutation p.E102K 0.20 tolerated(0.29) benign(0.004) TCGA-96-A4JK-01 9 136599233 136599233 C G SARDH Silent p.R21R 0.37 TCGA-96-A4JK-01 9 138011410 138011410 G A OLFM1 Missense_Mutation p.D264N 0.25 deleterious(0.02) probably_damaging(0.945) TCGA-96-A4JK-01 9 138378978 138378978 A C PPP1R26 Silent p.P874P 0.36 TCGA-96-A4JK-01 9 139874447 139874447 G T PTGDS Missense_Mutation p.Q127H 0.35 tolerated(0.18) benign(0.003) TCGA-96-A4JK-01 9 15468705 15468705 C G PSIP1 Missense_Mutation p.R448T 0.31 deleterious(0.01) benign(0.321) TCGA-96-A4JK-01 9 18721601 18721601 C T ADAMTSL1 Silent p.C648C 0.29 TCGA-96-A4JK-01 9 27190556 27190556 G A TEK Missense_Mutation p.V453M 0.10 tolerated(0.06) benign(0.206) TCGA-96-A4JK-01 9 32542023 32542023 C T TOPORS Missense_Mutation p.G834R 0.32 deleterious(0.04) unknown(0) TCGA-96-A4JK-01 9 3277388 3277388 C A RFX3 Missense_Mutation p.V309F 0.34 tolerated(0.35) benign(0.212) TCGA-96-A4JK-01 9 35754019 35754019 G C MSMP Missense_Mutation p.S36R 0.40 deleterious(0.03) benign(0.147) TCGA-96-A4JK-01 9 37692718 37692729 GCTCCCGGGACA - FRMPD1 In_Frame_Del p.R29_S32del 0.13 TCGA-96-A4JK-01 9 40774878 40774878 C G ZNF658 Missense_Mutation p.E133Q 0.51 tolerated(0.34) benign(0.133) TCGA-96-A4JK-01 9 71549857 71549857 A T PIP5K1B Missense_Mutation p.K418M 0.13 deleterious(0.02) possibly_damaging(0.847) TCGA-96-A4JK-01 9 84531679 84531679 C T SPATA31D5P RNA 0.14 TCGA-96-A4JK-01 9 88924171 88924171 C A ZCCHC6 Missense_Mutation p.V1206F 0.11 deleterious(0) probably_damaging(0.995) TCGA-96-A4JK-01 9 95576256 95576256 C T ANKRD19P RNA 0.42 TCGA-96-A4JK-01 9 96097779 96097779 T A C9orf129 Missense_Mutation p.E81V 0.43 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-96-A4JK-01 9 97355995 97355995 C T FBP2 Missense_Mutation p.S5N 0.14 tolerated(0.22) benign(0.122) TCGA-96-A4JK-01 9 99699546 99699546 C A NUTM2G Missense_Mutation p.P395T 0.36 tolerated(0.42) benign(0) TCGA-96-A4JK-01 X 110653331 110653331 T A DCX Missense_Mutation p.Q180L 0.65 tolerated(0.42) possibly_damaging(0.482) TCGA-96-A4JK-01 X 114141416 114141416 C A HTR2C Missense_Mutation p.A272D 0.55 tolerated(0.64) benign(0.001) TCGA-96-A4JK-01 X 123514550 123514550 C A TENM1 Missense_Mutation p.G2679W 0.57 deleterious(0) probably_damaging(0.999) TCGA-96-A4JK-01 X 123637551 123637551 A G TENM1 Missense_Mutation p.S1102P 0.34 deleterious(0) probably_damaging(0.92) TCGA-96-A4JK-01 X 128876153 128876153 C A XPNPEP2 Missense_Mutation p.P40H 0.37 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-96-A4JK-01 X 129629557 129629557 C A RP1-274L7.1 Intron 0.60 TCGA-96-A4JK-01 X 130678611 130678611 T C OR13H1 Silent p.C188C 0.67 TCGA-96-A4JK-01 X 130678628 130678628 A G OR13H1 Missense_Mutation p.N194S 0.70 tolerated(0.28) benign(0.042) TCGA-96-A4JK-01 X 134023131 134023131 G A MOSPD1 3'UTR 0.53 TCGA-96-A4JK-01 X 142967281 142967281 C A UBE2NL Missense_Mutation p.P27T 0.68 deleterious(0.02) benign(0.419) TCGA-96-A4JK-01 X 144905476 144905476 G T SLITRK2 Silent p.V511V 0.14 TCGA-96-A4JK-01 X 152939544 152939544 G T PNCK Silent p.A29A 0.63 TCGA-96-A4JK-01 X 153133328 153133328 G T L1CAM Missense_Mutation p.D622E 0.11 tolerated(0.6) benign(0.012) TCGA-96-A4JK-01 X 17771434 17771434 G A SCML1 Silent p.L304L 0.52 TCGA-96-A4JK-01 X 21675109 21675109 C A KLHL34 Silent p.P266P 0.56 TCGA-96-A4JK-01 X 302617 302617 C A PPP2R3B Splice_Site p.X362_splice 0.39 TCGA-96-A4JK-01 X 37663320 37663320 A G CYBB Missense_Mutation p.E363G 0.61 tolerated(0.15) benign(0.02) TCGA-96-A4JK-01 X 48673999 48673999 C - HDAC6 Frame_Shift_Del p.C426Vfs*14 0.12 TCGA-96-A4JK-01 X 67944231 67944231 C T STARD8 Silent p.T1093T 0.62 TCGA-96-A4JK-01 X 68383059 68383059 G A PJA1 Missense_Mutation p.P8L 0.32 deleterious(0.03) possibly_damaging(0.715) TCGA-96-A4JK-01 X 73065152 73065152 G T XIST RNA 0.51 TCGA-96-A4JK-01 X 83724059 83724059 T A HDX Silent p.P224P 0.04 TCGA-96-A4JK-01 X 86921530 86921530 C A KLHL4 Intron 0.65 TCGA-96-A4JK-01 X 88008578 88008578 A T CPXCR1 Missense_Mutation p.T55S 0.60 tolerated(0.34) benign(0.01) TCGA-96-A4JL-01 10 11531116 11531116 T A USP6NL Nonsense_Mutation p.K234* 0.17 TCGA-96-A4JL-01 10 135197670 135197670 G A PAOX Missense_Mutation p.A359T 0.06 tolerated(0.69) benign(0.008) TCGA-96-A4JL-01 10 93588060 93588060 C T TNKS2 Missense_Mutation p.S334L 0.20 tolerated(0.18) benign(0.078) TCGA-96-A4JL-01 10 94392304 94392304 G C KIF11 Missense_Mutation p.R519P 0.19 deleterious(0) probably_damaging(0.996) TCGA-96-A4JL-01 11 200098 200098 G C ODF3 3'UTR 0.23 TCGA-96-A4JL-01 11 55587765 55587765 G A OR5D18 Silent p.A220A 0.19 TCGA-96-A4JL-01 11 70052355 70052355 C T FADD Missense_Mutation p.R135C 0.35 tolerated(0.16) probably_damaging(1) TCGA-96-A4JL-01 11 7324372 7324372 G A SYT9 Missense_Mutation p.R83Q 0.15 deleterious(0.02) benign(0.032) TCGA-96-A4JL-01 11 758994 758996 TGT - TALDO1 In_Frame_Del p.L90del 0.15 TCGA-96-A4JL-01 12 110983725 110983725 T C PPTC7 Missense_Mutation p.I188V 0.17 tolerated(0.68) benign(0.007) TCGA-96-A4JL-01 12 125396395 125396396 - T UBC Frame_Shift_Ins p.E642Gfs*6 0.16 TCGA-96-A4JL-01 12 45173502 45173502 G A NELL2 Missense_Mutation p.P234S 0.22 tolerated(0.21) probably_damaging(1) TCGA-96-A4JL-01 14 103355914 103355914 A C TRAF3 Silent p.S223S 0.26 TCGA-96-A4JL-01 14 103355915 103355915 G T TRAF3 Nonsense_Mutation p.E224* 0.26 TCGA-96-A4JL-01 14 20692716 20692716 G C OR11H6 Missense_Mutation p.G283A 0.05 tolerated(0.07) possibly_damaging(0.734) TCGA-96-A4JL-01 15 41961599 41961599 G A MGA Nonsense_Mutation p.W169* 0.13 TCGA-96-A4JL-01 15 54825202 54825202 G A UNC13C Silent p.K1878K 0.13 TCGA-96-A4JL-01 15 66729175 66729175 G A MAP2K1 Missense_Mutation p.G128D 0.16 deleterious(0) probably_damaging(1) TCGA-96-A4JL-01 16 48596009 48596009 A C N4BP1 Missense_Mutation p.L182W 0.24 deleterious(0) probably_damaging(0.999) TCGA-96-A4JL-01 16 67865717 67865717 G T CENPT Missense_Mutation p.Q155K 0.18 tolerated(0.19) probably_damaging(0.991) TCGA-96-A4JL-01 16 715970 715970 G A WDR90 Nonsense_Mutation p.W1485* 0.31 TCGA-96-A4JL-01 16 85699607 85699607 G - GSE1 Frame_Shift_Del p.D929Mfs*38 0.25 TCGA-96-A4JL-01 17 10404746 10404746 C T MYH1 Missense_Mutation p.R1140H 0.18 deleterious(0.01) probably_damaging(1) TCGA-96-A4JL-01 17 26732417 26732417 A G SLC46A1 Missense_Mutation p.S100P 0.15 tolerated(0.11) possibly_damaging(0.819) TCGA-96-A4JL-01 17 38612828 38612828 G A IGFBP4 Missense_Mutation p.R257Q 0.16 tolerated_low_confidence(0.26) benign(0.003) TCGA-96-A4JL-01 17 38948770 38948770 C T KRT28 Missense_Mutation p.R435H 0.24 tolerated(0.54) benign(0.022) TCGA-96-A4JL-01 17 40986871 40986871 A G PSME3 Missense_Mutation p.N74S 0.15 tolerated(0.11) benign(0.019) TCGA-96-A4JL-01 17 43922586 43922586 C T SPPL2C Missense_Mutation p.T105M 0.17 deleterious(0.01) possibly_damaging(0.883) TCGA-96-A4JL-01 18 31432849 31432849 C T NOL4 Missense_Mutation p.R625Q 0.13 deleterious(0) probably_damaging(0.994) TCGA-96-A4JL-01 19 52659201 52659201 C T ZNF836 Missense_Mutation p.E579K 0.03 deleterious(0.04) probably_damaging(0.955) TCGA-96-A4JL-01 19 53762749 53762749 G T VN1R2 Missense_Mutation p.R374I 0.04 tolerated(0.47) benign(0) TCGA-96-A4JL-01 19 54385845 54385845 G C PRKCG Missense_Mutation p.V33L 0.19 deleterious(0) possibly_damaging(0.495) TCGA-96-A4JL-01 19 54848923 54848923 C T LILRA4 Missense_Mutation p.V234M 0.19 tolerated(0.1) benign(0.354) TCGA-96-A4JL-01 19 56307552 56307552 C T NLRP11 Missense_Mutation p.G746R 0.24 tolerated(0.59) benign(0.001) TCGA-96-A4JL-01 1 110167986 110167986 C T AMPD2 Silent p.A105A 0.18 TCGA-96-A4JL-01 1 170955789 170955789 G A MROH9 Missense_Mutation p.A273T 0.04 tolerated(0.21) benign(0.411) TCGA-96-A4JL-01 1 193205409 193205409 T A CDC73 Missense_Mutation p.V447E 0.15 deleterious(0) probably_damaging(0.992) TCGA-96-A4JL-01 1 19513774 19513774 G A UBR4 Missense_Mutation p.P506S 0.14 benign(0.005) TCGA-96-A4JL-01 1 200818721 200818721 T C CAMSAP2 Missense_Mutation p.S942P 0.24 tolerated(0.32) benign(0.001) TCGA-96-A4JL-01 1 228528504 228528504 C T OBSCN Missense_Mutation p.P6828L 0.20 possibly_damaging(0.758) TCGA-96-A4JL-01 1 232943368 232943368 G T MAP10 Missense_Mutation p.A867S 0.24 tolerated(0.05) possibly_damaging(0.502) TCGA-96-A4JL-01 20 44536374 44536374 G A PLTP Silent p.H190H 0.13 TCGA-96-A4JL-01 21 44840259 44840259 C T SIK1 Missense_Mutation p.R276Q 0.22 deleterious(0.02) benign(0.173) TCGA-96-A4JL-01 22 50636393 50636393 G A TRABD Silent p.A271A 0.20 TCGA-96-A4JL-01 2 130737816 130737816 A T RAB6C Missense_Mutation p.Q43L 0.14 deleterious_low_confidence(0) possibly_damaging(0.584) TCGA-96-A4JL-01 2 176987752 176987752 C - HOXD9 Frame_Shift_Del p.P87Rfs*6 0.18 TCGA-96-A4JL-01 2 202134247 202134247 G T CASP8 Intron 0.11 TCGA-96-A4JL-01 2 207509153 207509153 G A AC010731.4 RNA 0.19 TCGA-96-A4JL-01 2 48818889 48818889 C T STON1-GTF2A1L Silent p.S676S 0.16 TCGA-96-A4JL-01 2 55463897 55463897 C T MTIF2 Missense_Mutation p.D691N 0.18 deleterious(0) benign(0.42) TCGA-96-A4JL-01 3 124829098 124829098 G A SLC12A8 Missense_Mutation p.P332S 0.08 deleterious(0) probably_damaging(1) TCGA-96-A4JL-01 3 50107916 50107916 G A RBM6 Missense_Mutation p.R1016H 0.24 deleterious(0.01) benign(0.05) TCGA-96-A4JL-01 4 114267077 114267077 C T ANK2 Missense_Mutation p.P1424S 0.17 probably_damaging(0.992) TCGA-96-A4JL-01 4 118005347 118005347 G A TRAM1L1 3'UTR 0.24 TCGA-96-A4JL-01 5 140755147 140755147 G A PCDHGA6 Silent p.A499A 0.09 TCGA-96-A4JL-01 5 140810261 140810261 G A PCDHGA12 5'UTR 0.22 TCGA-96-A4JL-01 5 26881297 26881297 C T CDH9 Missense_Mutation p.R773H 0.19 tolerated(0.13) possibly_damaging(0.883) TCGA-96-A4JL-01 5 37358196 37358196 C T NUP155 Silent p.V150V 0.14 TCGA-96-A4JL-01 5 43700219 43700219 A T NNT Splice_Site p.X959_splice 0.17 TCGA-96-A4JL-01 6 33408569 33408570 CC - SYNGAP1 Frame_Shift_Del p.R581Gfs*36 0.14 TCGA-96-A4JL-01 6 42858265 42858265 C T C6orf226 Missense_Mutation p.E88K 0.13 tolerated_low_confidence(0.16) possibly_damaging(0.486) TCGA-96-A4JL-01 7 100677010 100677010 T A MUC17 Silent p.P771P 0.16 TCGA-96-A4JL-01 7 129855967 129855967 G A SSMEM1 Missense_Mutation p.R131H 0.27 tolerated(0.28) benign(0) TCGA-96-A4JL-01 7 131913125 131913125 C T PLXNA4 Missense_Mutation p.V570I 0.13 tolerated(0.08) probably_damaging(0.951) TCGA-96-A4JL-01 7 150718345 150718345 C T ATG9B Missense_Mutation p.R298H 0.05 deleterious(0) probably_damaging(0.949) TCGA-96-A4JL-01 7 66548475 66548475 A G TYW1 Missense_Mutation p.I445V 0.09 deleterious(0.02) possibly_damaging(0.51) TCGA-96-A4JL-01 7 97822257 97822257 G T LMTK2 Missense_Mutation p.R827L 0.23 tolerated(0.33) benign(0.004) TCGA-96-A4JL-01 7 98257788 98257788 C T NPTX2 Silent p.R381R 0.13 TCGA-96-A4JL-01 8 144885712 144885712 G A SCRIB Silent p.D1148D 0.16 TCGA-96-A4JL-01 9 93979574 93979574 A G AUH Silent p.I293I 0.22 TCGA-96-A4JL-01 X 102864103 102864103 C T TCEAL3 Silent p.D37D 0.21 TCGA-96-A4JL-01 X 125685408 125685408 G A DCAF12L1 Missense_Mutation p.S395L 0.14 tolerated(0.27) benign(0) TCGA-96-A4JL-01 X 128946731 128946731 G A ZDHHC9 Missense_Mutation p.T247I 0.21 deleterious(0.01) possibly_damaging(0.715) TCGA-96-A4JL-01 X 151091941 151091941 C A MAGEA4 5'UTR 0.11 TCGA-96-A4JL-01 X 152027361 152027361 G A NSDHL Silent p.A105A 0.19 TCGA-96-A4JL-01 X 57618773 57618773 G C ZXDB Missense_Mutation p.D98H 0.12 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-96-A4JL-01 X 99663497 99663497 C A PCDH19 Missense_Mutation p.Q33H 0.19 tolerated(0.12) probably_damaging(0.967) TCGA-98-7454-01 10 1043129 1043129 C T GTPBP4 Intron 0.12 TCGA-98-7454-01 10 115891044 115891044 G C C10orf118 Missense_Mutation p.L655V 0.11 deleterious(0) probably_damaging(1) TCGA-98-7454-01 10 117849283 117849283 G T GFRA1 Missense_Mutation p.T389N 0.08 tolerated(0.12) benign(0.157) TCGA-98-7454-01 10 120354574 120354574 C - PRLHR Frame_Shift_Del p.L62* 0.09 TCGA-98-7454-01 10 12279259 12279259 G A CDC123 Missense_Mutation p.E228K 0.17 tolerated(0.09) benign(0.41) TCGA-98-7454-01 10 18957572 18957572 G T ARL5B Missense_Mutation p.R74L 0.10 deleterious(0.01) benign(0.417) TCGA-98-7454-01 10 38245964 38245964 T C ZNF25 Silent p.P74P 0.21 TCGA-98-7454-01 10 43871140 43871140 C A FXYD4 Intron 0.11 TCGA-98-7454-01 10 48388630 48388630 C T RBP3 Missense_Mutation p.A750T 0.09 tolerated(0.43) possibly_damaging(0.798) TCGA-98-7454-01 10 50818961 50818961 G T SLC18A3 Missense_Mutation p.D59Y 0.15 tolerated(0.07) benign(0.034) TCGA-98-7454-01 10 54528027 54528027 G T MBL2 Missense_Mutation p.T206K 0.12 tolerated(0.07) benign(0.018) TCGA-98-7454-01 10 56138562 56138562 C A PCDH15 Nonsense_Mutation p.G100* 0.17 TCGA-98-7454-01 10 6150670 6150670 C - RBM17 Frame_Shift_Del p.P177Hfs*6 0.16 TCGA-98-7454-01 10 76797781 76797781 A C DUPD1 Missense_Mutation p.L159R 0.17 deleterious(0) probably_damaging(0.998) TCGA-98-7454-01 10 79569410 79569410 C A DLG5 Silent p.V1514V 0.12 TCGA-98-7454-01 10 99696076 99696076 C A CRTAC1 Missense_Mutation p.R91L 0.11 deleterious(0.04) possibly_damaging(0.796) TCGA-98-7454-01 11 114392633 114392633 A T NXPE1 3'UTR 0.21 TCGA-98-7454-01 11 1217633 1217633 C A MUC5AC RNA 0.08 TCGA-98-7454-01 11 123810672 123810672 G C OR4D5 Missense_Mutation p.V117L 0.08 deleterious(0.04) benign(0.087) TCGA-98-7454-01 11 19077552 19077552 C T MRGPRX2 Nonsense_Mutation p.W133* 0.14 TCGA-98-7454-01 11 32622315 32622315 T G EIF3M Missense_Mutation p.F294V 0.22 deleterious(0) probably_damaging(0.99) TCGA-98-7454-01 11 55111379 55111379 C G OR4A16 Missense_Mutation p.L235V 0.08 deleterious_low_confidence(0) possibly_damaging(0.881) TCGA-98-7454-01 11 55135767 55135767 T A OR4A15 Silent p.A136A 0.04 TCGA-98-7454-01 11 55136350 55136350 A T OR4A15 Missense_Mutation p.S331C 0.15 tolerated_low_confidence(0.38) benign(0.031) TCGA-98-7454-01 11 55432928 55432928 C A OR4C6 Missense_Mutation p.L96I 0.06 deleterious_low_confidence(0.03) benign(0.094) TCGA-98-7454-01 11 55873319 55873319 C T OR8H2 Silent p.S267S 0.06 TCGA-98-7454-01 11 59271869 59271869 C A OR4D11 Missense_Mutation p.T274N 0.13 tolerated(0.32) benign(0.181) TCGA-98-7454-01 11 6048701 6048701 G C OR56A1 Missense_Mutation p.I78M 0.12 tolerated(0.74) benign(0.01) TCGA-98-7454-01 11 66026086 66026086 G T KLC2 Silent p.P7P 0.08 TCGA-98-7454-01 11 69514086 69514086 G C FGF19 Missense_Mutation p.P199A 0.12 deleterious(0.05) probably_damaging(0.969) TCGA-98-7454-01 11 7064577 7064577 C A NLRP14 Nonsense_Mutation p.Y440* 0.17 TCGA-98-7454-01 11 78380945 78380945 C A TENM4 Missense_Mutation p.G2149C 0.12 deleterious(0) probably_damaging(0.993) TCGA-98-7454-01 11 8737319 8737319 G A ST5 Missense_Mutation p.S559L 0.09 deleterious(0.03) possibly_damaging(0.504) TCGA-98-7454-01 11 92533341 92533341 A T FAT3 Missense_Mutation p.N2388Y 0.17 probably_damaging(0.999) TCGA-98-7454-01 12 101433761 101433761 G C ANO4 Missense_Mutation p.R274P 0.14 tolerated(0.3) possibly_damaging(0.552) TCGA-98-7454-01 12 107114620 107114620 C A RFX4 Silent p.I448I 0.14 TCGA-98-7454-01 12 112846111 112846111 G A RPL6 Missense_Mutation p.A90V 0.11 tolerated(0.11) benign(0.042) TCGA-98-7454-01 12 123270300 123270300 A T CCDC62 Missense_Mutation p.E144V 0.13 deleterious(0) possibly_damaging(0.836) TCGA-98-7454-01 12 124352508 124352508 A T DNAH10 Missense_Mutation p.D2336V 0.17 benign(0.022) TCGA-98-7454-01 12 15814984 15814984 C A EPS8 Missense_Mutation p.M262I 0.04 tolerated(0.09) benign(0.001) TCGA-98-7454-01 12 24736663 24736663 G A LINC00477 RNA 0.07 TCGA-98-7454-01 12 55615260 55615260 C A OR10A7 Missense_Mutation p.S151Y 0.13 tolerated(0.21) probably_damaging(0.926) TCGA-98-7454-01 12 62860993 62860993 C T MON2 Silent p.S2S 0.17 TCGA-98-7454-01 12 6729535 6729535 G A LPAR5 Missense_Mutation p.P294S 0.15 deleterious(0) probably_damaging(1) TCGA-98-7454-01 12 72057183 72057183 C A ZFC3H1 Missense_Mutation p.G70C 0.11 deleterious_low_confidence(0.01) probably_damaging(0.981) TCGA-98-7454-01 12 8083952 8083952 G T SLC2A3 Silent p.L133L 0.12 TCGA-98-7454-01 12 9013797 9013797 A T A2ML1 Missense_Mutation p.T1136S 0.06 deleterious(0.01) probably_damaging(0.938) TCGA-98-7454-01 13 102368093 102368093 G T ITGBL1 3'UTR 0.25 TCGA-98-7454-01 14 100166392 100166392 C T CYP46A1 Missense_Mutation p.R133C 0.08 tolerated(0.09) probably_damaging(0.939) TCGA-98-7454-01 14 47120737 47120739 GCG TT RPL10L Frame_Shift_Del p.A68Tfs*10 0.14 TCGA-98-7454-01 14 74967652 74967652 G T LTBP2 Missense_Mutation p.R1801S 0.12 tolerated(0.15) possibly_damaging(0.892) TCGA-98-7454-01 14 81970615 81970615 C T SEL1L Missense_Mutation p.E182K 0.10 tolerated(0.06) benign(0.057) TCGA-98-7454-01 14 94578004 94578004 G T IFI27 Splice_Site 0.19 TCGA-98-7454-01 15 23931582 23931582 A C NDN Missense_Mutation p.F261L 0.12 tolerated(0.66) benign(0.026) TCGA-98-7454-01 15 66850345 66850345 G C LCTL Missense_Mutation p.N245K 0.13 deleterious(0) benign(0.141) TCGA-98-7454-01 15 72499498 72499498 T A PKM Silent p.R319R 0.20 TCGA-98-7454-01 15 74610977 74610977 C A CCDC33 Intron 0.24 TCGA-98-7454-01 15 78214397 78214397 T C RP11-114H24.7 3'Flank 0.12 TCGA-98-7454-01 15 78401575 78401575 A T CIB2 Splice_Site p.X116_splice 0.12 TCGA-98-7454-01 15 85438253 85438253 C T SLC28A1 Silent p.L120L 0.07 TCGA-98-7454-01 15 91491407 91491407 G A UNC45A Missense_Mutation p.R544Q 0.05 deleterious(0) possibly_damaging(0.673) TCGA-98-7454-01 16 11009441 11009441 C G CIITA Nonsense_Mutation p.S968* 0.05 TCGA-98-7454-01 16 18604002 18604002 G T ABCC6P1 RNA 0.08 TCGA-98-7454-01 16 24226045 24226045 G T PRKCB Missense_Mutation p.D644Y 0.09 deleterious(0) probably_damaging(0.997) TCGA-98-7454-01 16 28914376 28914376 C A ATP2A1 Silent p.R924R 0.11 TCGA-98-7454-01 16 3338492 3338492 G A ZNF263 Missense_Mutation p.V270M 0.10 tolerated(0.12) benign(0.018) TCGA-98-7454-01 16 5058605 5058605 C T SEC14L5 Missense_Mutation p.R586C 0.14 tolerated(0.2) benign(0.009) TCGA-98-7454-01 16 58437088 58437088 C G GINS3 Missense_Mutation p.I130M 0.19 tolerated(0.09) benign(0.063) TCGA-98-7454-01 16 67380314 67380314 C T LRRC36 Silent p.L118L 0.08 TCGA-98-7454-01 16 88968051 88968051 C G CBFA2T3 Missense_Mutation p.R55S 0.14 tolerated_low_confidence(0.06) benign(0.169) TCGA-98-7454-01 16 89911743 89911743 G T SPIRE2 Missense_Mutation p.M86I 0.14 tolerated(0.21) benign(0.005) TCGA-98-7454-01 17 10356558 10356558 G T MYH4 Missense_Mutation p.Q1008K 0.15 tolerated(0.05) probably_damaging(0.983) TCGA-98-7454-01 17 18638609 18638609 G T TRIM16L Missense_Mutation p.V295L 0.17 deleterious(0.01) possibly_damaging(0.665) TCGA-98-7454-01 17 27935028 27935028 G T ANKRD13B Missense_Mutation p.R92L 0.11 deleterious(0.01) possibly_damaging(0.787) TCGA-98-7454-01 17 31107623 31107623 C A MYO1D Missense_Mutation p.R92L 0.11 deleterious(0.01) probably_damaging(0.922) TCGA-98-7454-01 17 43531367 43531367 C A PLEKHM1 Silent p.L617L 0.16 TCGA-98-7454-01 17 54558125 54558125 G A ANKFN1 Silent p.E682E 0.05 TCGA-98-7454-01 17 56233180 56233180 G T OR4D1 Silent p.L222L 0.07 TCGA-98-7454-01 17 59556092 59556092 G A TBX4 Silent p.V218V 0.15 TCGA-98-7454-01 17 71282183 71282183 C A CDC42EP4 Missense_Mutation p.G153C 0.14 deleterious(0.04) benign(0.018) TCGA-98-7454-01 17 7369472 7369472 T A ZBTB4 Missense_Mutation p.R217W 0.20 benign(0.181) TCGA-98-7454-01 17 73750831 73750831 C T ITGB4 Missense_Mutation p.S1498L 0.08 deleterious_low_confidence(0.05) benign(0.044) TCGA-98-7454-01 17 80789000 80789000 C G ZNF750 Missense_Mutation p.R444T 0.07 deleterious(0.05) benign(0.382) TCGA-98-7454-01 17 9763318 9763318 C T GLP2R Silent p.Y275Y 0.13 TCGA-98-7454-01 19 17599743 17599743 C T SLC27A1 Missense_Mutation p.S294L 0.13 deleterious(0.02) benign(0.2) TCGA-98-7454-01 19 17994540 17994540 C A SLC5A5 Missense_Mutation p.F431L 0.20 deleterious(0.01) benign(0.434) TCGA-98-7454-01 19 1828065 1828065 C G REXO1 Silent p.S241S 0.18 TCGA-98-7454-01 19 18900820 18900820 G T COMP Missense_Mutation p.S107R 0.28 tolerated(0.12) benign(0.174) TCGA-98-7454-01 19 36015777 36015777 G A SBSN Missense_Mutation p.T563M 0.17 deleterious(0) probably_damaging(0.976) TCGA-98-7454-01 19 40698507 40698507 G A MAP3K10 Missense_Mutation p.R190Q 0.10 deleterious(0.02) benign(0.005) TCGA-98-7454-01 19 43358354 43358354 G T PSG10P RNA 0.11 TCGA-98-7454-01 19 43433716 43433716 G A PSG7 Missense_Mutation p.S196F 0.18 deleterious(0) possibly_damaging(0.455) TCGA-98-7454-01 19 52090550 52090550 C T ZNF175 Silent p.L322L 0.05 TCGA-98-7454-01 19 52249906 52249906 G A FPR1 Silent p.F114F 0.16 TCGA-98-7454-01 19 58563969 58563969 G A ZSCAN1 Missense_Mutation p.E193K 0.11 tolerated(0.32) benign(0.006) TCGA-98-7454-01 19 603945 603945 G - HCN2 Frame_Shift_Del p.R345Pfs*12 0.16 TCGA-98-7454-01 1 109814947 109814947 C T CELSR2 Silent p.P2658P 0.09 TCGA-98-7454-01 1 117554472 117554472 C T CD101 Missense_Mutation p.S242L 0.12 deleterious(0) probably_damaging(0.988) TCGA-98-7454-01 1 157557804 157557804 C T FCRL4 Nonsense_Mutation p.W138* 0.27 TCGA-98-7454-01 1 157801672 157801672 G T CD5L 3'UTR 0.18 TCGA-98-7454-01 1 160718155 160718155 G A SLAMF7 Missense_Mutation p.R76H 0.13 tolerated(0.6) benign(0.024) TCGA-98-7454-01 1 163122442 163122442 C A RGS5 Missense_Mutation p.W94C 0.04 deleterious(0.01) probably_damaging(0.999) TCGA-98-7454-01 1 176564291 176564291 G T PAPPA2 Missense_Mutation p.W517C 0.19 deleterious(0.01) possibly_damaging(0.838) TCGA-98-7454-01 1 182554859 182554859 G C RNASEL Silent p.L361L 0.05 TCGA-98-7454-01 1 186278955 186278955 T C PRG4 Missense_Mutation p.V1151A 0.22 unknown(0) TCGA-98-7454-01 1 215759920 215759920 A C KCTD3 Missense_Mutation p.K237Q 0.33 deleterious(0) probably_damaging(0.997) TCGA-98-7454-01 1 228595893 228595893 G A TRIM17 3'UTR 0.09 TCGA-98-7454-01 1 229438607 229438607 A T RAB4A Splice_Site p.X181_splice 0.06 TCGA-98-7454-01 1 237791177 237791177 G A RYR2 Silent p.E2079E 0.35 TCGA-98-7454-01 1 31906918 31906918 G A SERINC2 Missense_Mutation p.E423K 0.14 tolerated(0.36) possibly_damaging(0.61) TCGA-98-7454-01 1 32197737 32197737 C A BAI2 Missense_Mutation p.V1247L 0.21 deleterious(0) probably_damaging(0.99) TCGA-98-7454-01 1 36939424 36939424 G A CSF3R Silent p.C142C 0.17 TCGA-98-7454-01 1 40768803 40768803 C T COL9A2 Missense_Mutation p.E535K 0.19 deleterious(0.02) probably_damaging(0.952) TCGA-98-7454-01 1 43778053 43778053 T A TIE1 Missense_Mutation p.L570M 0.37 tolerated(0.13) benign(0.258) TCGA-98-7454-01 1 70505073 70505073 G T LRRC7 Missense_Mutation p.G1151V 0.19 tolerated(0.14) benign(0.151) TCGA-98-7454-01 1 76878074 76878074 G T ST6GALNAC3 Missense_Mutation p.V199F 0.22 possibly_damaging(0.719) TCGA-98-7454-01 1 79402082 79402083 AG T ELTD1 Frame_Shift_Del p.F258Lfs*8 0.11 TCGA-98-7454-01 1 84386805 84386805 T C TTLL7 Silent p.R443R 0.24 TCGA-98-7454-01 1 90048954 90048954 G C LRRC8B Missense_Mutation p.E249Q 0.12 deleterious(0) probably_damaging(0.979) TCGA-98-7454-01 20 32207386 32207386 C A CBFA2T2 Missense_Mutation p.R171S 0.07 deleterious(0) probably_damaging(0.998) TCGA-98-7454-01 20 34091981 34091981 G T CEP250 Missense_Mutation p.W1928C 0.07 benign(0.029) TCGA-98-7454-01 20 47990312 47990312 G T KCNB1 Silent p.A595A 0.10 TCGA-98-7454-01 21 46021159 46021159 G A KRTAP10-7 Missense_Mutation p.C213Y 0.04 deleterious(0.01) unknown(0) TCGA-98-7454-01 2 112994145 112994145 C A ZC3H8 Missense_Mutation p.Q166H 0.18 tolerated(0.21) benign(0.417) TCGA-98-7454-01 2 113958878 113958878 G A PSD4 Silent p.S1019S 0.09 TCGA-98-7454-01 2 167279838 167279838 T C SCN7A Silent p.K986K 0.10 TCGA-98-7454-01 2 179404193 179404193 G C TTN Missense_Mutation p.H32867D 0.06 TCGA-98-7454-01 2 179584394 179584394 T A TTN Missense_Mutation p.K7942I 0.06 TCGA-98-7454-01 2 179595303 179595303 C A TTN Missense_Mutation p.S5986I 0.12 TCGA-98-7454-01 2 179633485 179633485 G T TTN Missense_Mutation p.N3026K 0.12 TCGA-98-7454-01 2 197171900 197171900 A T HECW2 Silent p.A881A 0.18 TCGA-98-7454-01 2 209214747 209214747 G T PIKFYVE Splice_Site p.X1792_splice 0.08 TCGA-98-7454-01 2 220046416 220046416 G A FAM134A Missense_Mutation p.D312N 0.04 deleterious(0.03) probably_damaging(0.995) TCGA-98-7454-01 2 220497158 220497158 G T SLC4A3 Missense_Mutation p.A406S 0.24 tolerated(0.47) possibly_damaging(0.792) TCGA-98-7454-01 2 228884164 228884164 G T SPHKAP Missense_Mutation p.S469Y 0.17 tolerated(0.07) possibly_damaging(0.463) TCGA-98-7454-01 2 230633947 230633947 C A TRIP12 Missense_Mutation p.S1893I 0.09 deleterious(0) probably_damaging(0.998) TCGA-98-7454-01 2 230661340 230661340 T A TRIP12 Missense_Mutation p.L1186F 0.09 deleterious(0.01) possibly_damaging(0.563) TCGA-98-7454-01 2 230661341 230661341 A T TRIP12 Nonsense_Mutation p.L1186* 0.10 TCGA-98-7454-01 2 230668789 230668789 T G TRIP12 Missense_Mutation p.R860S 0.14 deleterious(0) possibly_damaging(0.766) TCGA-98-7454-01 2 26997973 26997973 G A SLC35F6 Missense_Mutation p.R71K 0.11 tolerated(0.23) benign(0.002) TCGA-98-7454-01 2 29072754 29072754 A G SPDYA Missense_Mutation p.N297D 0.09 tolerated_low_confidence(0.36) benign(0.002) TCGA-98-7454-01 2 3727487 3727487 G A ALLC Silent p.G67G 0.06 TCGA-98-7454-01 2 79385514 79385514 G T REG3A Missense_Mutation p.L91M 0.08 tolerated(0.09) possibly_damaging(0.706) TCGA-98-7454-01 2 89246861 89246861 A T IGKV1-5 Missense_Mutation p.D103E 0.13 tolerated(1) benign(0.001) TCGA-98-7454-01 2 89399602 89399602 G T IGKV1-16 Missense_Mutation p.S34Y 0.11 deleterious(0.03) possibly_damaging(0.665) TCGA-98-7454-01 2 96690312 96690312 A C GPAT2 Missense_Mutation p.L511R 0.14 deleterious(0) possibly_damaging(0.883) TCGA-98-7454-01 3 122575165 122575165 C G DIRC2 Silent p.G318G 0.20 TCGA-98-7454-01 3 124930221 124930221 C T SLC12A8 5'UTR 0.06 TCGA-98-7454-01 3 126071137 126071137 C A KLF15 Missense_Mutation p.G210V 0.25 tolerated(0.23) possibly_damaging(0.655) TCGA-98-7454-01 3 142681850 142681850 C T PAQR9 Missense_Mutation p.G110D 0.14 tolerated(0.59) benign(0.273) TCGA-98-7454-01 3 147106637 147106637 C A ZIC4 3'UTR 0.16 TCGA-98-7454-01 3 148789064 148789064 C A HLTF Missense_Mutation p.G290V 0.16 deleterious(0) probably_damaging(1) TCGA-98-7454-01 3 155200791 155200791 T C PLCH1 Silent p.P1016P 0.11 TCGA-98-7454-01 3 193002840 193002840 C G ATP13A5 Missense_Mutation p.G1030A 0.13 tolerated(0.15) benign(0.024) TCGA-98-7454-01 3 195595384 195595384 C A TNK2 Silent p.P658P 0.19 TCGA-98-7454-01 3 196388408 196388408 G C NRROS Missense_Mutation p.E632Q 0.04 tolerated(0.36) benign(0.031) TCGA-98-7454-01 3 38748841 38748841 G A SCN10A Nonsense_Mutation p.Q1439* 0.14 TCGA-98-7454-01 3 40468971 40468971 C G ENTPD3 Missense_Mutation p.A521G 0.10 deleterious_low_confidence(0.01) benign(0.11) TCGA-98-7454-01 3 44636052 44636052 C T ZNF660 Missense_Mutation p.R123W 0.07 tolerated(0.08) probably_damaging(0.961) TCGA-98-7454-01 4 108999489 108999489 T C LEF1 Missense_Mutation p.I299V 0.12 tolerated(0.06) benign(0.17) TCGA-98-7454-01 4 114276361 114276361 G T ANK2 Missense_Mutation p.G2196V 0.10 possibly_damaging(0.549) TCGA-98-7454-01 4 123167871 123167871 G A KIAA1109 Missense_Mutation p.E1740K 0.11 probably_damaging(0.993) TCGA-98-7454-01 4 1347002 1347002 C T UVSSA Silent p.P245P 0.13 TCGA-98-7454-01 4 147741274 147741274 C T TTC29 Intron 0.12 TCGA-98-7454-01 4 162508644 162508644 A T FSTL5 Nonsense_Mutation p.Y326* 0.17 TCGA-98-7454-01 4 184605510 184605510 G C TRAPPC11 Missense_Mutation p.L473F 0.08 deleterious(0.02) probably_damaging(0.961) TCGA-98-7454-01 4 47525055 47525055 G A ATP10D Missense_Mutation p.C171Y 0.21 tolerated(1) possibly_damaging(0.756) TCGA-98-7454-01 4 47896219 47896219 T C NFXL1 Missense_Mutation p.Q477R 0.11 tolerated(0.1) benign(0.097) TCGA-98-7454-01 4 48490563 48490563 G C SLC10A4 Missense_Mutation p.M307I 0.10 deleterious(0) probably_damaging(0.967) TCGA-98-7454-01 4 56818358 56818358 A T CEP135 Missense_Mutation p.Y21F 0.14 deleterious(0) probably_damaging(0.999) TCGA-98-7454-01 4 7042959 7042959 G A CCDC96 3'UTR 0.12 TCGA-98-7454-01 4 90856061 90856061 C T MMRN1 Silent p.F410F 0.13 TCGA-98-7454-01 5 139936884 139936884 G A SRA1 Intron 0.12 TCGA-98-7454-01 5 140188676 140188676 G T PCDHA4 Missense_Mutation p.R635L 0.13 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-98-7454-01 5 155935628 155935628 G T SGCD Silent p.L70L 0.12 TCGA-98-7454-01 5 156589591 156589591 G T FAM71B Missense_Mutation p.A562D 0.06 deleterious(0) possibly_damaging(0.856) TCGA-98-7454-01 5 179043915 179043915 T A HNRNPH1 Missense_Mutation p.S388C 0.11 deleterious_low_confidence(0) possibly_damaging(0.459) TCGA-98-7454-01 5 180047305 180047305 C A FLT4 Missense_Mutation p.A804S 0.08 tolerated(0.32) benign(0.042) TCGA-98-7454-01 5 180052962 180052962 A T FLT4 Missense_Mutation p.L443H 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-98-7454-01 5 24488117 24488117 G T CDH10 Silent p.T674T 0.27 TCGA-98-7454-01 5 33630994 33630994 C A ADAMTS12 Missense_Mutation p.R638L 0.16 deleterious(0) benign(0.124) TCGA-98-7454-01 5 35033648 35033648 G A AGXT2 Missense_Mutation p.H198Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-98-7454-01 5 80422972 80422972 G A RASGRF2 Silent p.G892G 0.14 TCGA-98-7454-01 6 100838831 100838831 T C SIM1 Silent p.R569R 0.12 TCGA-98-7454-01 6 110777621 110777621 G T SLC22A16 Intron 0.17 TCGA-98-7454-01 6 110777622 110777622 G T SLC22A16 Intron 0.17 TCGA-98-7454-01 6 117127834 117127834 A T GPRC6A Nonsense_Mutation p.L345* 0.11 TCGA-98-7454-01 6 127797221 127797221 C A SOGA3 Missense_Mutation p.Q650H 0.14 deleterious(0) probably_damaging(1) TCGA-98-7454-01 6 133046071 133046071 T A VNN3 Silent p.T195T 0.22 TCGA-98-7454-01 6 137519389 137519389 T A IFNGR1 Missense_Mutation p.S417C 0.08 deleterious(0) possibly_damaging(0.808) TCGA-98-7454-01 6 142399987 142399987 C A NMBR Missense_Mutation p.R159L 0.11 tolerated(0.45) benign(0.087) TCGA-98-7454-01 6 152784618 152784618 T A SYNE1 Missense_Mutation p.Q656L 0.07 possibly_damaging(0.639) TCGA-98-7454-01 6 152949500 152949500 G C SYNE1 5'UTR 0.06 TCGA-98-7454-01 6 155728266 155728266 G T NOX3 Silent p.P526P 0.07 TCGA-98-7454-01 6 157405980 157405980 G C ARID1B Missense_Mutation p.G741A 0.21 probably_damaging(0.999) TCGA-98-7454-01 6 161026122 161026122 C G LPA Missense_Mutation p.M967I 0.16 tolerated(0.07) probably_damaging(0.98) TCGA-98-7454-01 6 1611076 1611076 C G FOXC1 Silent p.L132L 0.08 TCGA-98-7454-01 6 168349103 168349103 A G MLLT4 Missense_Mutation p.Y1252C 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.819) TCGA-98-7454-01 6 26124629 26124629 G C HIST1H2AC Missense_Mutation p.E57Q 0.08 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-98-7454-01 6 26285357 26285357 G A HIST1H4H 3'UTR 0.10 TCGA-98-7454-01 6 27114551 27114551 G A HIST1H2BK Silent p.P9P 0.19 TCGA-98-7454-01 6 30571909 30571909 C T PPP1R10 Missense_Mutation p.V462M 0.11 tolerated(0.25) possibly_damaging(0.652) TCGA-98-7454-01 6 32798073 32798073 G A TAP2 Nonsense_Mutation p.Q536* 0.13 TCGA-98-7454-01 6 35911850 35911850 G C SLC26A8 Missense_Mutation p.P914A 0.17 tolerated_low_confidence(0.06) benign(0) TCGA-98-7454-01 6 39835482 39835482 C T DAAM2 Missense_Mutation p.R209C 0.15 tolerated(0.18) probably_damaging(0.994) TCGA-98-7454-01 6 41243914 41243914 G T TREM1 Missense_Mutation p.S218R 0.12 deleterious(0) probably_damaging(0.964) TCGA-98-7454-01 6 44198590 44198590 G T SLC29A1 Missense_Mutation p.G244W 0.18 deleterious(0.02) possibly_damaging(0.906) TCGA-98-7454-01 6 47254095 47254095 C A TNFRSF21 Missense_Mutation p.Q111H 0.10 tolerated(0.1) benign(0.146) TCGA-98-7454-01 6 47775947 47775947 T C OPN5 Missense_Mutation p.S272P 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-98-7454-01 7 100676247 100676247 C T MUC17 Missense_Mutation p.S517F 0.20 possibly_damaging(0.799) TCGA-98-7454-01 7 101944465 101944465 G T SH2B2 Missense_Mutation p.G254C 0.47 deleterious(0) probably_damaging(0.987) TCGA-98-7454-01 7 122342745 122342745 C A RNF148 Missense_Mutation p.R20S 0.28 tolerated(0.48) benign(0.115) TCGA-98-7454-01 7 126883281 126883281 A G GRM8 5'UTR 0.26 TCGA-98-7454-01 7 128493602 128493602 C A FLNC Nonsense_Mutation p.C2096* 0.23 TCGA-98-7454-01 7 27204814 27204814 T A HOXA9 Missense_Mutation p.H88L 0.19 tolerated(0.06) benign(0.067) TCGA-98-7454-01 7 4089038 4089038 G C SDK1 Missense_Mutation p.Q887H 0.05 deleterious(0.05) benign(0.013) TCGA-98-7454-01 7 75177089 75177089 G A HIP1 Missense_Mutation p.A810V 0.04 tolerated(0.27) benign(0.097) TCGA-98-7454-01 8 104928700 104928700 G T RIMS2 Silent p.V657V 0.21 TCGA-98-7454-01 8 105509961 105509961 G A LRP12 Silent p.P273P 0.16 TCGA-98-7454-01 8 11301965 11301965 C G FAM167A 5'UTR 0.07 TCGA-98-7454-01 8 113349024 113349024 G T CSMD3 Silent p.G2292G 0.13 TCGA-98-7454-01 8 11643543 11643543 G T NEIL2 Missense_Mutation p.A254S 0.14 tolerated(0.84) benign(0.006) TCGA-98-7454-01 8 116632234 116632234 C A TRPS1 Missense_Mutation p.G31C 0.15 deleterious_low_confidence(0.02) possibly_damaging(0.58) TCGA-98-7454-01 8 126445949 126445949 A T TRIB1 Intron 0.24 TCGA-98-7454-01 8 127569408 127569408 G A FAM84B Missense_Mutation p.P76L 0.17 tolerated(0.52) benign(0.002) TCGA-98-7454-01 8 132002760 132002760 C A ADCY8 Missense_Mutation p.C330F 0.14 deleterious(0.01) possibly_damaging(0.896) TCGA-98-7454-01 8 145234459 145234459 C T MROH1 Silent p.L90L 0.13 TCGA-98-7454-01 8 22548167 22548167 G T EGR3 Missense_Mutation p.T328K 0.09 deleterious(0) probably_damaging(1) TCGA-98-7454-01 8 35541191 35541191 G T UNC5D Missense_Mutation p.A233S 0.10 deleterious(0.02) possibly_damaging(0.794) TCGA-98-7454-01 9 100137734 100137734 A T CCDC180 Splice_Site p.X1613_splice 0.06 TCGA-98-7454-01 9 135554841 135554841 C T GTF3C4 Missense_Mutation p.P612L 0.18 tolerated_low_confidence(0.1) benign(0.002) TCGA-98-7454-01 9 136535850 136535850 A G SARDH Missense_Mutation p.L784P 0.11 deleterious(0) probably_damaging(0.998) TCGA-98-7454-01 9 138440640 138440640 A T OBP2A Missense_Mutation p.M159L 0.22 tolerated(0.08) benign(0.012) TCGA-98-7454-01 9 33057695 33057695 G A SMU1 Silent p.A256A 0.17 TCGA-98-7454-01 9 36087709 36087709 G C RECK Missense_Mutation p.R219T 0.11 deleterious(0.02) possibly_damaging(0.795) TCGA-98-7454-01 9 37708432 37708432 A T FRMPD1 Missense_Mutation p.Q99L 0.06 deleterious(0) probably_damaging(0.998) TCGA-98-7454-01 9 4697818 4697818 T A CDC37L1 Missense_Mutation p.M229K 0.17 deleterious(0) possibly_damaging(0.883) TCGA-98-7454-01 9 5812907 5812907 C T ERMP1 Missense_Mutation p.D335N 0.13 deleterious(0) possibly_damaging(0.906) TCGA-98-7454-01 9 97090892 97090892 C A NUTM2F Missense_Mutation p.G5V 0.07 deleterious(0.02) probably_damaging(0.96) TCGA-98-7454-01 9 97090893 97090893 C T NUTM2F Missense_Mutation p.G5R 0.07 tolerated(0.22) benign(0.251) TCGA-98-7454-01 X 10085253 10085253 C T WWC3 Missense_Mutation p.S385F 0.08 deleterious(0.02) probably_damaging(0.947) TCGA-98-7454-01 X 103349911 103349911 C T SLC25A53 Silent p.K10K 0.06 TCGA-98-7454-01 X 107978200 107978200 C G IRS4 Missense_Mutation p.E459Q 0.08 deleterious_low_confidence(0.01) benign(0.109) TCGA-98-7454-01 X 110439717 110439717 G A PAK3 Missense_Mutation p.R455Q 0.05 deleterious(0) probably_damaging(0.998) TCGA-98-7454-01 X 110494237 110494237 C A CAPN6 Missense_Mutation p.V356L 0.14 tolerated(0.81) benign(0.001) TCGA-98-7454-01 X 114541370 114541370 T C LUZP4 3'UTR 0.10 TCGA-98-7454-01 X 118221772 118221772 G C KIAA1210 Missense_Mutation p.R1141G 0.06 tolerated(0.14) benign(0.028) TCGA-98-7454-01 X 118586959 118586959 C A SLC25A43 Silent p.P319P 0.05 TCGA-98-7454-01 X 135618297 135618297 G T VGLL1 Missense_Mutation p.V40L 0.12 deleterious(0.02) possibly_damaging(0.905) TCGA-98-7454-01 X 14708937 14708937 A T GLRA2 Nonsense_Mutation p.K346* 0.11 TCGA-98-7454-01 X 153592925 153592925 C A FLNA Missense_Mutation p.R664L 0.12 tolerated(0.35) benign(0.002) TCGA-98-7454-01 X 18622101 18622101 C A CDKL5 Missense_Mutation p.L353M 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.665) TCGA-98-7454-01 X 19398341 19398341 C T MAP3K15 Missense_Mutation p.G829D 0.14 deleterious(0.02) probably_damaging(0.934) TCGA-98-7454-01 X 19947959 19947959 C A CXorf23 Missense_Mutation p.G655C 0.06 deleterious(0) probably_damaging(1) TCGA-98-7454-01 X 21627711 21627711 G T CNKSR2 Missense_Mutation p.A890S 0.22 tolerated(0.75) benign(0.001) TCGA-98-7454-01 X 23685814 23685814 A G PRDX4 Missense_Mutation p.R43G 0.25 tolerated_low_confidence(0.13) benign(0) TCGA-98-7454-01 X 24197484 24197484 C G ZFX Missense_Mutation p.I81M 0.04 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-98-7454-01 X 27997831 27997831 C A DCAF8L1 Missense_Mutation p.D541Y 0.08 deleterious(0.04) benign(0.015) TCGA-98-7454-01 X 29935666 29935666 A C IL1RAPL1 Missense_Mutation p.K288N 0.09 deleterious(0.01) benign(0.028) TCGA-98-7454-01 X 30326419 30326419 G C NR0B1 Silent p.S354S 0.19 TCGA-98-7454-01 X 37028469 37028469 G C FAM47C Silent p.R662R 0.15 TCGA-98-7454-01 X 38146094 38146094 G C RPGR Missense_Mutation p.Q720E 0.44 unknown(0) TCGA-98-7454-01 X 64137678 64137678 C A ZC4H2 Silent p.R220R 0.22 TCGA-98-7454-01 X 77529212 77529212 G T CYSLTR1 Missense_Mutation p.S11Y 0.07 deleterious(0.01) benign(0.229) TCGA-98-7454-01 X 78426842 78426842 G T GPR174 Missense_Mutation p.S113I 0.04 deleterious(0) probably_damaging(0.998) TCGA-98-7454-01 X 91133547 91133547 C G PCDH11X Missense_Mutation p.L770V 0.09 tolerated(0.51) benign(0.192) TCGA-98-8020-01 10 105815718 105815718 C G COL17A1 Missense_Mutation p.E503D 0.17 unknown(0) TCGA-98-8020-01 10 129902810 129902810 C G MKI67 Missense_Mutation p.E2432Q 0.28 tolerated(1) benign(0.097) TCGA-98-8020-01 10 55617016 55617016 A C PCDH15 Missense_Mutation p.V1242G 0.12 deleterious(0.01) possibly_damaging(0.685) TCGA-98-8020-01 10 99160170 99160170 G A RRP12 Silent p.L87L 0.16 TCGA-98-8020-01 11 124135339 124135339 T G OR8G5 Missense_Mutation p.F206C 0.44 tolerated(0.11) benign(0.032) TCGA-98-8020-01 11 18600304 18600304 A G UEVLD Missense_Mutation p.F32L 0.40 deleterious(0.03) benign(0.13) TCGA-98-8020-01 11 46637164 46637164 G A HARBI1 Silent p.L208L 0.38 TCGA-98-8020-01 11 47306560 47306560 G T MADD Silent p.V742V 0.18 TCGA-98-8020-01 11 47306561 47306561 C T MADD Missense_Mutation p.P743S 0.17 tolerated_low_confidence(0.06) benign(0.005) TCGA-98-8020-01 11 48157605 48157605 T C PTPRJ Missense_Mutation p.F544L 0.40 tolerated(0.65) benign(0.013) TCGA-98-8020-01 11 48161037 48161037 G T PTPRJ Splice_Site p.X718_splice 0.34 TCGA-98-8020-01 11 68115394 68115394 C T LRP5 Silent p.I57I 0.04 TCGA-98-8020-01 11 68153825 68153825 C T LRP5 Missense_Mutation p.R353W 0.04 deleterious(0.01) probably_damaging(0.997) TCGA-98-8020-01 12 120789148 120789148 T G MSI1 Silent p.T263T 0.23 TCGA-98-8020-01 12 121003261 121003261 A C RNF10 Missense_Mutation p.Q605P 0.35 deleterious(0.04) benign(0.046) TCGA-98-8020-01 12 129558857 129558857 G T TMEM132D Missense_Mutation p.Q955K 0.18 deleterious(0) possibly_damaging(0.644) TCGA-98-8020-01 12 52448418 52448418 G A NR4A1 Silent p.K115K 0.56 TCGA-98-8020-01 12 5687673 5687673 C T ANO2 Missense_Mutation p.G749S 0.50 deleterious(0.01) probably_damaging(0.986) TCGA-98-8020-01 12 64819193 64819193 G A XPOT Missense_Mutation p.E510K 0.28 deleterious(0.02) benign(0.357) TCGA-98-8020-01 12 69652403 69652403 C T CPSF6 Missense_Mutation p.P243L 0.11 tolerated(0.16) unknown(0) TCGA-98-8020-01 13 35731354 35731354 G A NBEA Missense_Mutation p.E931K 0.41 deleterious(0) probably_damaging(0.998) TCGA-98-8020-01 14 106090865 106090865 G C IGHG4 Missense_Mutation p.A311G 0.49 tolerated(0.21) benign(0.002) TCGA-98-8020-01 14 47120717 47120717 A T RPL10L Missense_Mutation p.Y75N 0.39 tolerated(0.05) probably_damaging(0.991) TCGA-98-8020-01 14 70170233 70170233 G - KIAA0247 Frame_Shift_Del p.G82Afs*6 0.18 TCGA-98-8020-01 14 75513760 75513760 C G MLH3 Missense_Mutation p.E867Q 0.11 tolerated(0.2) benign(0.04) TCGA-98-8020-01 15 28482159 28482159 G A HERC2 Missense_Mutation p.S1318L 0.30 benign(0.164) TCGA-98-8020-01 15 56208995 56208995 C G NEDD4 Missense_Mutation p.R12T 0.14 deleterious_low_confidence(0) benign(0.298) TCGA-98-8020-01 16 12497344 12497344 G C SNX29 Silent p.V665V 0.15 TCGA-98-8020-01 16 21261577 21261577 G A ANKS4B Silent p.V230V 0.18 TCGA-98-8020-01 16 31092388 31092388 C T ZNF646 Silent p.D1581D 0.18 TCGA-98-8020-01 16 3406129 3406129 C A OR2C1 Silent p.L63L 0.33 TCGA-98-8020-01 17 15341375 15341375 G A CDRT4 Silent p.L57L 0.11 TCGA-98-8020-01 17 39680200 39680200 G A KRT19 Missense_Mutation p.A333V 0.47 tolerated(0.3) benign(0.023) TCGA-98-8020-01 17 40048630 40048630 C T ACLY Missense_Mutation p.D558N 0.22 tolerated(0.06) possibly_damaging(0.738) TCGA-98-8020-01 17 40049323 40049323 C G ACLY Missense_Mutation p.D522H 0.27 deleterious(0.04) benign(0.251) TCGA-98-8020-01 17 48273553 48273553 C T COL1A1 Missense_Mutation p.R322H 0.48 unknown(0) TCGA-98-8020-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.29 deleterious(0) probably_damaging(1) TCGA-98-8020-01 17 7578403 7578403 C A TP53 Missense_Mutation p.C176F 0.33 deleterious(0) probably_damaging(0.993) TCGA-98-8020-01 17 7750265 7750265 G T KDM6B Silent p.G280G 0.06 TCGA-98-8020-01 18 19996142 19996142 C G CTAGE1 Missense_Mutation p.E545Q 0.18 tolerated(0.1) probably_damaging(0.929) TCGA-98-8020-01 18 19996980 19996980 C A CTAGE1 Missense_Mutation p.M265I 0.19 tolerated(0.51) benign(0.02) TCGA-98-8020-01 18 20953721 20953721 G A TMEM241 Silent p.L130L 0.29 TCGA-98-8020-01 18 76752671 76752671 G A SALL3 Missense_Mutation p.R227H 0.55 deleterious(0) unknown(0) TCGA-98-8020-01 18 9944936 9944936 G C VAPA Missense_Mutation p.G145R 0.18 tolerated(0.15) benign(0.009) TCGA-98-8020-01 19 10945693 10945693 G A TMED1 Missense_Mutation p.L128F 0.08 tolerated(0.27) benign(0.145) TCGA-98-8020-01 19 10945694 10945694 G T TMED1 Missense_Mutation p.S127R 0.07 tolerated(0.1) benign(0.036) TCGA-98-8020-01 19 11034248 11034248 C T YIPF2 Missense_Mutation p.E253K 0.05 deleterious(0.04) benign(0.403) TCGA-98-8020-01 19 15338425 15338425 C A EPHX3 Silent p.L302L 0.33 TCGA-98-8020-01 19 17919086 17919086 G A B3GNT3 Missense_Mutation p.R157H 0.22 tolerated(0.27) benign(0.027) TCGA-98-8020-01 19 21240786 21240786 G A ZNF430 Missense_Mutation p.E558K 0.13 tolerated(1) benign(0.001) TCGA-98-8020-01 19 2917148 2917148 T C ZNF57 Missense_Mutation p.C177R 0.09 deleterious(0) benign(0.353) TCGA-98-8020-01 19 37488226 37488226 C T ZNF568 Missense_Mutation p.R481C 0.33 tolerated(0.13) probably_damaging(0.993) TCGA-98-8020-01 19 42212640 42212640 C A CEA 5'UTR 0.21 TCGA-98-8020-01 19 46334827 46334827 C T SYMPK Silent p.Q471Q 0.11 TCGA-98-8020-01 19 50781417 50781417 G T MYH14 Silent p.L1301L 0.27 TCGA-98-8020-01 1 12416000 12416000 C A VPS13D Missense_Mutation p.P3242T 0.11 probably_damaging(0.996) TCGA-98-8020-01 1 152082139 152082139 C T TCHH Missense_Mutation p.R1185K 0.15 unknown(0) TCGA-98-8020-01 1 152285052 152285052 G C FLG Missense_Mutation p.H770Q 0.39 possibly_damaging(0.451) TCGA-98-8020-01 1 16070670 16070670 G A TMEM82 Missense_Mutation p.A118T 0.17 tolerated(0.66) benign(0.003) TCGA-98-8020-01 1 17263160 17263160 G A CROCC Missense_Mutation p.A329T 0.25 benign(0.042) TCGA-98-8020-01 1 181453093 181453093 C G CACNA1E Missense_Mutation p.I71M 0.22 deleterious(0) benign(0.308) TCGA-98-8020-01 1 222833604 222833604 G A MIA3 Silent p.V1687V 0.20 TCGA-98-8020-01 1 39824874 39824874 G C MACF1 Missense_Mutation p.R1999P 0.09 benign(0.294) TCGA-98-8020-01 1 62960099 62960099 C G DOCK7 Missense_Mutation p.L1657F 0.17 deleterious(0) probably_damaging(0.997) TCGA-98-8020-01 1 75037144 75037144 G T C1orf173 Missense_Mutation p.A1417E 0.18 tolerated(0.15) possibly_damaging(0.698) TCGA-98-8020-01 21 10908875 10908875 G A TPTE Silent p.D490D 0.29 TCGA-98-8020-01 22 29881822 29881822 G C NEFH Missense_Mutation p.E398D 0.17 deleterious(0) unknown(0) TCGA-98-8020-01 22 36705357 36705357 C G MYH9 Missense_Mutation p.D605H 0.15 probably_damaging(0.985) TCGA-98-8020-01 22 41647061 41647061 G A RANGAP1 Missense_Mutation p.S478F 0.14 deleterious(0) probably_damaging(0.997) TCGA-98-8020-01 22 50988045 50988045 C T KLHDC7B Missense_Mutation p.R484C 0.26 deleterious(0) probably_damaging(1) TCGA-98-8020-01 2 125521688 125521688 C A CNTNAP5 Missense_Mutation p.L832I 0.33 deleterious(0.01) possibly_damaging(0.497) TCGA-98-8020-01 2 141267597 141267597 G A LRP1B Silent p.F2766F 0.20 TCGA-98-8020-01 2 149803441 149803441 C A KIF5C Missense_Mutation p.H206Q 0.14 deleterious(0) probably_damaging(0.996) TCGA-98-8020-01 2 17962700 17962700 G C GEN1 Missense_Mutation p.D741H 0.28 deleterious(0.01) possibly_damaging(0.717) TCGA-98-8020-01 2 45801787 45801787 G A SRBD1 Missense_Mutation p.T383M 0.18 deleterious(0) possibly_damaging(0.742) TCGA-98-8020-01 2 73449901 73449901 C T SMYD5 Missense_Mutation p.R221W 0.16 deleterious(0.02) probably_damaging(0.918) TCGA-98-8020-01 2 85097677 85097677 A C TRABD2A Missense_Mutation p.V114G 0.19 deleterious(0) probably_damaging(0.999) TCGA-98-8020-01 3 113522463 113522463 G C ATP6V1A Missense_Mutation p.E510Q 0.14 deleterious(0.02) possibly_damaging(0.848) TCGA-98-8020-01 3 128711911 128711911 G C KIAA1257 Missense_Mutation p.I79M 0.11 deleterious(0) probably_damaging(0.996) TCGA-98-8020-01 3 189705393 189705393 C T LEPREL1 Missense_Mutation p.D341N 0.37 tolerated(0.49) benign(0.046) TCGA-98-8020-01 3 45127192 45127192 T A CDCP1 Missense_Mutation p.S817C 0.68 deleterious(0.05) benign(0.017) TCGA-98-8020-01 3 49049771 49049771 G C WDR6 Missense_Mutation p.E298D 0.24 tolerated(0.5) benign(0.03) TCGA-98-8020-01 4 13606646 13606646 T C BOD1L1 Silent p.E626E 0.31 TCGA-98-8020-01 4 141483493 141483493 G A UCP1 Silent p.I221I 0.32 TCGA-98-8020-01 4 41687764 41687764 C A LIMCH1 Missense_Mutation p.H951Q 0.33 tolerated(0.44) benign(0.004) TCGA-98-8020-01 5 140187224 140187224 G T PCDHA4 Missense_Mutation p.R151L 0.20 deleterious_low_confidence(0.04) possibly_damaging(0.699) TCGA-98-8020-01 5 145610442 145610442 G A RBM27 Missense_Mutation p.R271Q 0.17 deleterious(0) possibly_damaging(0.722) TCGA-98-8020-01 5 176308169 176308169 C G HK3 Missense_Mutation p.V893L 0.14 tolerated(0.18) benign(0.012) TCGA-98-8020-01 5 24509763 24509763 G C CDH10 Missense_Mutation p.L390V 0.47 tolerated(0.71) benign(0.301) TCGA-98-8020-01 5 33938166 33938166 G A RXFP3 Missense_Mutation p.A441T 0.24 tolerated(0.18) benign(0.004) TCGA-98-8020-01 5 76264653 76264653 C T CRHBP Silent p.Y304Y 0.15 TCGA-98-8020-01 5 89948318 89948318 C A GPR98 Missense_Mutation p.A1191D 0.12 possibly_damaging(0.908) TCGA-98-8020-01 6 10404745 10404745 G C TFAP2A Missense_Mutation p.R254G 0.27 deleterious(0) benign(0.299) TCGA-98-8020-01 6 144999702 144999702 C A UTRN Missense_Mutation p.S2547Y 0.24 deleterious(0) probably_damaging(1) TCGA-98-8020-01 6 15513156 15513156 G T JARID2 Missense_Mutation p.R1049L 0.12 tolerated(0.29) benign(0.097) TCGA-98-8020-01 6 166580233 166580233 G A T Silent p.N106N 0.15 TCGA-98-8020-01 6 26197399 26197399 C A HIST1H3D Missense_Mutation p.R27L 0.26 tolerated_low_confidence(0.06) benign(0.001) TCGA-98-8020-01 6 26217383 26217383 G C HIST1H2AE Missense_Mutation p.A61P 0.27 deleterious_low_confidence(0) benign(0.052) TCGA-98-8020-01 6 27776076 27776076 G C HIST1H2AI Missense_Mutation p.R30P 0.16 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-98-8020-01 6 69348958 69348958 C G BAI3 Missense_Mutation p.R131G 0.21 tolerated(0.06) probably_damaging(0.953) TCGA-98-8020-01 7 116146183 116146183 G C CAV2 3'UTR 0.23 TCGA-98-8020-01 7 141635714 141635714 C A CLEC5A Missense_Mutation p.C82F 0.16 deleterious(0.01) probably_damaging(0.99) TCGA-98-8020-01 7 141673238 141673238 C T TAS2R38 Silent p.L84L 0.31 TCGA-98-8020-01 7 158695081 158695081 C A WDR60 Missense_Mutation p.D384E 0.37 tolerated(0.15) possibly_damaging(0.739) TCGA-98-8020-01 8 107696495 107696495 G A OXR1 Missense_Mutation p.E146K 0.37 deleterious(0.04) benign(0.371) TCGA-98-8020-01 8 113519031 113519031 G A CSMD3 Missense_Mutation p.S1595F 0.08 deleterious(0) probably_damaging(0.995) TCGA-98-8020-01 8 11614521 11614521 G A GATA4 Missense_Mutation p.E359K 0.48 tolerated(0.15) benign(0.168) TCGA-98-8020-01 8 48626164 48626164 G C SPIDR Missense_Mutation p.D768H 0.10 deleterious(0.01) probably_damaging(0.912) TCGA-98-8020-01 8 67049375 67049375 C G TRIM55 Missense_Mutation p.R185G 0.10 deleterious(0.02) probably_damaging(0.95) TCGA-98-8020-01 9 130493102 130493102 G C TTC16 Missense_Mutation p.Q680H 0.40 deleterious(0.02) possibly_damaging(0.838) TCGA-98-8020-01 9 134454831 134454831 G A RAPGEF1 3'UTR 0.38 TCGA-98-8020-01 9 5811263 5811263 G C ERMP1 Missense_Mutation p.S392C 0.27 deleterious(0.04) possibly_damaging(0.571) TCGA-98-8020-01 X 11682472 11682472 G A ARHGAP6 Silent p.S159S 0.18 TCGA-98-8020-01 X 139585880 139585880 G A SOX3 3'UTR 0.11 TCGA-98-8020-01 X 21985394 21985394 G C SMS Missense_Mutation p.D44H 0.18 deleterious(0.01) benign(0.31) TCGA-98-8020-01 X 31187648 31187648 G A DMD Missense_Mutation p.R3489C 0.27 possibly_damaging(0.835) TCGA-98-8020-01 X 48164276 48164276 C T SSX9 RNA 0.17 TCGA-98-8020-01 X 7811236 7811236 C A VCX 5'UTR 0.09 TCGA-98-8020-01 X 9863296 9863296 G T SHROOM2 Missense_Mutation p.A450S 0.09 tolerated(0.74) benign(0.002) TCGA-98-8021-01 10 100189551 100189551 C T HPS1 Silent p.E288E 0.29 TCGA-98-8021-01 10 100195035 100195035 C T HPS1 Missense_Mutation p.R131Q 0.37 deleterious(0.02) benign(0.105) TCGA-98-8021-01 10 118689360 118689360 C A KIAA1598 Missense_Mutation p.V338F 0.46 deleterious(0) possibly_damaging(0.856) TCGA-98-8021-01 10 126490443 126490443 C G FAM175B Missense_Mutation p.F15L 0.08 deleterious(0.02) benign(0.049) TCGA-98-8021-01 10 128973600 128973600 C A FAM196A Nonsense_Mutation p.E354* 0.09 TCGA-98-8021-01 10 134040439 134040439 C A STK32C Missense_Mutation p.M168I 0.09 deleterious(0.02) possibly_damaging(0.897) TCGA-98-8021-01 10 14870183 14870183 G C CDNF Missense_Mutation p.I68M 0.22 tolerated(0.2) benign(0.044) TCGA-98-8021-01 10 16942688 16942688 A T CUBN Silent p.T2782T 0.18 TCGA-98-8021-01 10 17142150 17142150 G A CUBN Missense_Mutation p.S540F 0.30 deleterious(0.02) probably_damaging(0.914) TCGA-98-8021-01 10 17164870 17164870 C G CUBN Missense_Mutation p.E173Q 0.25 deleterious(0) probably_damaging(1) TCGA-98-8021-01 10 24873463 24873463 C G ARHGAP21 Missense_Mutation p.D1919H 0.19 deleterious(0) possibly_damaging(0.866) TCGA-98-8021-01 10 26849745 26849745 T A APBB1IP Missense_Mutation p.N447K 0.30 tolerated(0.3) benign(0.001) TCGA-98-8021-01 10 30656747 30656747 G T AL161651.1 5'Flank 0.30 TCGA-98-8021-01 10 35625998 35625998 C G CCNY Missense_Mutation p.S6W 0.18 deleterious(0) probably_damaging(0.994) TCGA-98-8021-01 10 37431134 37431134 A T ANKRD30A Missense_Mutation p.N381Y 0.14 deleterious(0.04) benign(0.001) TCGA-98-8021-01 10 43089465 43089465 C G ZNF33B Missense_Mutation p.R311S 0.34 tolerated(0.6) benign(0.066) TCGA-98-8021-01 10 43325840 43325840 G A BMS1 Silent p.P1196P 0.10 TCGA-98-8021-01 10 49634428 49634428 C T MAPK8 Nonsense_Mutation p.Q293* 0.20 TCGA-98-8021-01 10 52595877 52595877 C G A1CF Missense_Mutation p.E195D 0.21 tolerated(0.09) benign(0.061) TCGA-98-8021-01 10 5494868 5494868 C G NET1 Silent p.L193L 0.36 TCGA-98-8021-01 10 5791587 5791587 C A FAM208B Missense_Mutation p.S2068Y 0.33 tolerated(0.66) benign(0.164) TCGA-98-8021-01 10 63851635 63851635 G C ARID5B Missense_Mutation p.E805Q 0.23 tolerated(0.47) benign(0.058) TCGA-98-8021-01 10 64430089 64430089 A G ZNF365 3'UTR 0.53 TCGA-98-8021-01 10 71562459 71562459 C G COL13A1 Missense_Mutation p.Q94E 0.09 deleterious_low_confidence(0.02) possibly_damaging(0.814) TCGA-98-8021-01 10 73047463 73047463 G C UNC5B Missense_Mutation p.G281A 0.15 deleterious(0) probably_damaging(1) TCGA-98-8021-01 10 89653814 89653814 C A PTEN Missense_Mutation p.P38T 0.30 deleterious(0) probably_damaging(0.998) TCGA-98-8021-01 10 95720538 95720538 C T PIPSL RNA 0.12 TCGA-98-8021-01 10 98469731 98469731 C T PIK3AP1 Missense_Mutation p.R8K 0.19 tolerated(0.58) benign(0.018) TCGA-98-8021-01 11 100179198 100179198 G C CNTN5 Missense_Mutation p.E910Q 0.15 deleterious(0.01) probably_damaging(0.993) TCGA-98-8021-01 11 102195891 102195891 G A BIRC3 Silent p.P217P 0.24 TCGA-98-8021-01 11 102401358 102401358 C T MMP7 Missense_Mutation p.G25E 0.37 tolerated(0.82) benign(0.048) TCGA-98-8021-01 11 108005886 108005886 C G ACAT1 Missense_Mutation p.P118A 0.09 tolerated(0.12) benign(0.029) TCGA-98-8021-01 11 108190746 108190746 G C ATM Missense_Mutation p.R2138T 0.11 deleterious(0.02) benign(0.145) TCGA-98-8021-01 11 108712201 108712201 C T DDX10 Missense_Mutation p.R749W 0.26 deleterious(0) probably_damaging(0.963) TCGA-98-8021-01 11 113628520 113628520 A C ZW10 Missense_Mutation p.H263Q 0.38 tolerated(0.51) benign(0.004) TCGA-98-8021-01 11 113813859 113813859 C T HTR3B Silent p.F284F 0.16 TCGA-98-8021-01 11 113848626 113848626 C G HTR3A Silent p.V73V 0.16 TCGA-98-8021-01 11 117074525 117074525 C T TAGLN Missense_Mutation p.T129I 0.23 deleterious(0.04) possibly_damaging(0.864) TCGA-98-8021-01 11 117160405 117160405 G A BACE1 Silent p.V461V 0.11 TCGA-98-8021-01 11 117165858 117165858 C G BACE1 Missense_Mutation p.E186Q 0.17 tolerated(0.35) possibly_damaging(0.675) TCGA-98-8021-01 11 118339490 118339490 G T KMT2A Missense_Mutation p.D145Y 0.24 probably_damaging(0.996) TCGA-98-8021-01 11 118342774 118342774 A G KMT2A Silent p.V300V 0.34 TCGA-98-8021-01 11 119020774 119020774 G C ABCG4 Silent p.L33L 0.13 TCGA-98-8021-01 11 119051924 119051924 G A NLRX1 Missense_Mutation p.R771Q 0.13 tolerated(0.19) benign(0.029) TCGA-98-8021-01 11 11977727 11977727 G C USP47 3'UTR 0.20 TCGA-98-8021-01 11 120837933 120837933 G T GRIK4 Missense_Mutation p.A766S 0.22 deleterious(0) possibly_damaging(0.878) TCGA-98-8021-01 11 121178003 121178003 C T SC5D Missense_Mutation p.H228Y 0.24 tolerated(0.14) probably_damaging(0.999) TCGA-98-8021-01 11 121340830 121340830 G A SORL1 Missense_Mutation p.D134N 0.10 tolerated(0.53) benign(0.009) TCGA-98-8021-01 11 123479325 123479325 T A GRAMD1B Intron 0.50 TCGA-98-8021-01 11 129795024 129795024 T G PRDM10 Missense_Mutation p.H548P 0.19 deleterious(0) probably_damaging(0.996) TCGA-98-8021-01 11 131781466 131781466 G T NTM Missense_Mutation p.V31L 0.25 tolerated(0.11) benign(0.33) TCGA-98-8021-01 11 132081982 132081982 C A NTM Missense_Mutation p.T156N 0.18 tolerated(0.12) benign(0.32) TCGA-98-8021-01 11 134038424 134038424 C G NCAPD3 Missense_Mutation p.E1105Q 0.12 deleterious(0.02) benign(0.37) TCGA-98-8021-01 11 17167247 17167247 G C PIK3C2A Missense_Mutation p.H558D 0.22 tolerated(0.05) benign(0.033) TCGA-98-8021-01 11 1774728 1774728 G T CTSD 3'UTR 0.16 TCGA-98-8021-01 11 1905167 1905167 G A LSP1 Silent p.Q296Q 0.07 TCGA-98-8021-01 11 19247081 19247081 G A E2F8 Missense_Mutation p.S703L 0.14 deleterious(0.01) probably_damaging(0.993) TCGA-98-8021-01 11 20483696 20483696 G C PRMT3 Missense_Mutation p.E415Q 0.19 benign(0.016) TCGA-98-8021-01 11 25004702 25004702 G T LUZP2 Missense_Mutation p.V210L 0.34 deleterious(0) benign(0.178) TCGA-98-8021-01 11 281610 281610 T C NLRP6 Missense_Mutation p.Y626H 0.27 tolerated(0.07) benign(0.132) TCGA-98-8021-01 11 30033192 30033192 C A KCNA4 Missense_Mutation p.G345V 0.20 tolerated(0.11) possibly_damaging(0.617) TCGA-98-8021-01 11 3028112 3028112 C T CARS Missense_Mutation p.E716K 0.22 tolerated(0.07) benign(0.185) TCGA-98-8021-01 11 31625337 31625337 G T ELP4 Missense_Mutation p.R179I 0.29 tolerated(0.1) benign(0.128) TCGA-98-8021-01 11 34478301 34478301 G C CAT Missense_Mutation p.Q331H 0.13 deleterious(0) probably_damaging(1) TCGA-98-8021-01 11 43349356 43349356 G C API5 Silent p.A291A 0.17 TCGA-98-8021-01 11 43836988 43836988 G A HSD17B12 Silent p.V131V 0.20 TCGA-98-8021-01 11 44265853 44265853 G C EXT2 3'UTR 0.25 TCGA-98-8021-01 11 46726414 46726414 G A ZNF408 Silent p.K388K 0.15 TCGA-98-8021-01 11 46889650 46889650 G A LRP4 Missense_Mutation p.P1656L 0.18 tolerated(0.26) benign(0.297) TCGA-98-8021-01 11 4703554 4703554 G T OR51E2 Missense_Mutation p.R130S 0.40 deleterious(0) benign(0.31) TCGA-98-8021-01 11 48267525 48267525 G T OR4X2 Missense_Mutation p.M290I 0.10 tolerated(0.12) benign(0.005) TCGA-98-8021-01 11 50003550 50003550 C A OR4C12 Missense_Mutation p.W163L 0.18 tolerated_low_confidence(0.42) possibly_damaging(0.661) TCGA-98-8021-01 11 5509993 5509993 G A OR52D1 Silent p.G19G 0.11 TCGA-98-8021-01 11 5528882 5528882 T A UBQLN3 Missense_Mutation p.Q636L 0.31 deleterious(0) probably_damaging(0.999) TCGA-98-8021-01 11 55681293 55681293 G C OR5W2 Missense_Mutation p.L256V 0.23 tolerated(0.06) benign(0.274) TCGA-98-8021-01 11 55872844 55872844 C A OR8H2 Missense_Mutation p.T109N 0.21 deleterious(0.02) benign(0.028) TCGA-98-8021-01 11 56043955 56043955 G A OR5T1 Missense_Mutation p.D281N 0.28 tolerated(0.09) benign(0.033) TCGA-98-8021-01 11 56086129 56086129 C T OR8K3 Missense_Mutation p.S116L 0.11 deleterious_low_confidence(0.01) probably_damaging(0.914) TCGA-98-8021-01 11 5664046 5664046 G A TRIM34 Splice_Site p.X292_splice 0.17 TCGA-98-8021-01 11 56949598 56949598 C T LRRC55 Silent p.A77A 0.32 TCGA-98-8021-01 11 57313454 57313454 C T SMTNL1 Missense_Mutation p.R358W 0.18 deleterious(0) probably_damaging(0.998) TCGA-98-8021-01 11 57466569 57466569 C T ZDHHC5 Missense_Mutation p.S554L 0.18 tolerated(0.13) benign(0.054) TCGA-98-8021-01 11 57798762 57798762 C T OR6Q1 Missense_Mutation p.A113V 0.17 deleterious(0) probably_damaging(0.985) TCGA-98-8021-01 11 58715414 58715414 G T GLYATL1 Missense_Mutation p.M85I 0.31 tolerated(0.07) benign(0.008) TCGA-98-8021-01 11 58920868 58920868 C G FAM111A Missense_Mutation p.S576C 0.15 tolerated(0.21) benign(0.007) TCGA-98-8021-01 11 60231725 60231725 C A MS4A1 Intron 0.29 TCGA-98-8021-01 11 61197632 61197632 C T SDHAF2 Missense_Mutation p.T5I 0.19 tolerated_low_confidence(0.36) benign(0.002) TCGA-98-8021-01 11 61548767 61548767 C T MYRF Silent p.L910L 0.21 TCGA-98-8021-01 11 61571216 61571216 G C FADS1 Missense_Mutation p.F359L 0.18 deleterious(0.01) benign(0.373) TCGA-98-8021-01 11 6191469 6191469 A G OR52B2 Missense_Mutation p.S30P 0.29 deleterious(0) possibly_damaging(0.827) TCGA-98-8021-01 11 62038373 62038373 G T SCGB2A2 Nonsense_Mutation p.E26* 0.13 TCGA-98-8021-01 11 64953764 64953764 C T CAPN1 Silent p.I238I 0.27 TCGA-98-8021-01 11 65046351 65046351 G C POLA2 Silent p.G204G 0.14 TCGA-98-8021-01 11 6519542 6519542 G A DNHD1 Missense_Mutation p.E33K 0.18 benign(0.004) TCGA-98-8021-01 11 65631171 65631171 G C MUS81 Missense_Mutation p.E314Q 0.23 deleterious(0.03) possibly_damaging(0.481) TCGA-98-8021-01 11 65746323 65746323 G A SART1 Silent p.E774E 0.21 TCGA-98-8021-01 11 65746341 65746341 G C SART1 Missense_Mutation p.K780N 0.17 deleterious(0.01) probably_damaging(0.991) TCGA-98-8021-01 11 66052141 66052141 G C YIF1A Missense_Mutation p.I283M 0.25 tolerated(0.19) benign(0.155) TCGA-98-8021-01 11 66102576 66102576 C T RIN1 Missense_Mutation p.D232N 0.23 tolerated(0.25) probably_damaging(0.998) TCGA-98-8021-01 11 66192318 66192318 G A NPAS4 Missense_Mutation p.E653K 0.13 tolerated(0.16) benign(0.003) TCGA-98-8021-01 11 66192438 66192438 G A NPAS4 Missense_Mutation p.E693K 0.18 deleterious(0.01) benign(0.03) TCGA-98-8021-01 11 67223174 67223174 C T CABP4 Missense_Mutation p.R94C 0.27 deleterious(0.03) benign(0.045) TCGA-98-8021-01 11 6891146 6891146 C A OR10A2 Missense_Mutation p.S54Y 0.17 deleterious(0) benign(0.033) TCGA-98-8021-01 11 69062906 69062906 C G MYEOV Missense_Mutation p.P29A 0.07 tolerated_low_confidence(0.14) benign(0.011) TCGA-98-8021-01 11 7022427 7022427 G A ZNF214 Nonsense_Mutation p.Q163* 0.16 TCGA-98-8021-01 11 72019593 72019593 G C CLPB Silent p.L378L 0.16 TCGA-98-8021-01 11 73843932 73843932 C A C2CD3 Missense_Mutation p.D392Y 0.12 deleterious(0.03) probably_damaging(0.979) TCGA-98-8021-01 11 76979566 76979566 T C GDPD4 Missense_Mutation p.M215V 0.30 tolerated(0.18) benign(0.005) TCGA-98-8021-01 11 77383134 77383134 T G RSF1 Missense_Mutation p.E1235A 0.20 tolerated(0.14) benign(0.341) TCGA-98-8021-01 11 77835212 77835212 C G ALG8 Missense_Mutation p.E75Q 0.06 deleterious(0.02) probably_damaging(0.982) TCGA-98-8021-01 11 78381570 78381570 C T TENM4 Silent p.Q1940Q 0.13 TCGA-98-8021-01 11 82643386 82643386 G C C11orf82 Missense_Mutation p.D336H 0.22 deleterious(0.04) benign(0.048) TCGA-98-8021-01 11 82698584 82698584 C G RAB30 Intron 0.30 TCGA-98-8021-01 11 842427 842427 C T POLR2L Missense_Mutation p.E28K 0.11 tolerated(0.35) benign(0.007) TCGA-98-8021-01 11 93836117 93836117 A T HEPHL1 Missense_Mutation p.R871S 0.23 tolerated(0.14) possibly_damaging(0.557) TCGA-98-8021-01 11 9598701 9598701 G C WEE1 Missense_Mutation p.L344F 0.18 deleterious(0) possibly_damaging(0.683) TCGA-98-8021-01 12 100492180 100492180 C T UHRF1BP1L Missense_Mutation p.E160K 0.18 deleterious(0.05) benign(0.017) TCGA-98-8021-01 12 100930789 100930789 G T NR1H4 Missense_Mutation p.V309L 0.31 tolerated(0.15) possibly_damaging(0.73) TCGA-98-8021-01 12 101433803 101433803 G T ANO4 Missense_Mutation p.C288F 0.23 tolerated(0.67) benign(0.325) TCGA-98-8021-01 12 1017069 1017069 C T WNK1 Nonsense_Mutation p.Q2234* 0.19 TCGA-98-8021-01 12 103240724 103240724 A G PAH Silent p.I306I 0.26 TCGA-98-8021-01 12 104100615 104100615 T C STAB2 Missense_Mutation p.C1348R 0.10 deleterious(0) probably_damaging(0.999) TCGA-98-8021-01 12 104517135 104517135 C T NFYB Missense_Mutation p.E100K 0.09 deleterious(0) probably_damaging(1) TCGA-98-8021-01 12 10854559 10854559 C A YBX3 Missense_Mutation p.E351D 0.31 deleterious(0.04) possibly_damaging(0.907) TCGA-98-8021-01 12 110824246 110824246 C G ANAPC7 Missense_Mutation p.D269H 0.27 deleterious(0) probably_damaging(0.956) TCGA-98-8021-01 12 111093072 111093072 G A HVCN1 Silent p.I126I 0.16 TCGA-98-8021-01 12 111856413 111856413 C T SH2B3 Missense_Mutation p.P155L 0.25 deleterious(0.01) benign(0.351) TCGA-98-8021-01 12 112622283 112622283 C A HECTD4 Missense_Mutation p.S3350I 0.24 benign(0.167) TCGA-98-8021-01 12 113325689 113325689 G C RPH3A Missense_Mutation p.Q508H 0.22 tolerated(0.07) benign(0.049) TCGA-98-8021-01 12 113599721 113599721 G A DDX54 Silent p.I759I 0.26 TCGA-98-8021-01 12 11545988 11545988 G C PRB2 Missense_Mutation p.P342A 0.12 tolerated(0.36) unknown(0) TCGA-98-8021-01 12 121469414 121469414 G A OASL Missense_Mutation p.S163F 0.14 tolerated(0.7) possibly_damaging(0.494) TCGA-98-8021-01 12 125453515 125453515 C G DHX37 Splice_Site p.X398_splice 0.25 TCGA-98-8021-01 12 130935737 130935737 C G RIMBP2 Intron 0.12 TCGA-98-8021-01 12 13219633 13219633 G C KIAA1467 Silent p.V304V 0.07 TCGA-98-8021-01 12 132211567 132211567 G A SFSWAP Silent p.K305K 0.10 TCGA-98-8021-01 12 132471105 132471105 C G EP400 Missense_Mutation p.P659R 0.10 unknown(0) TCGA-98-8021-01 12 133226066 133226066 C T POLE Silent p.K1277K 0.14 TCGA-98-8021-01 12 14019146 14019146 C T GRIN2B 5'UTR 0.20 TCGA-98-8021-01 12 21028247 21028247 C T SLCO1B3 Missense_Mutation p.S269F 0.07 deleterious(0) possibly_damaging(0.883) TCGA-98-8021-01 12 21711240 21711240 G A GYS2 Missense_Mutation p.S439L 0.10 deleterious(0.03) benign(0.029) TCGA-98-8021-01 12 22602743 22602743 G C C2CD5 Missense_Mutation p.P985R 0.13 tolerated_low_confidence(0.25) benign(0.019) TCGA-98-8021-01 12 25222328 25222328 C T LRMP 5'UTR 0.21 TCGA-98-8021-01 12 26580906 26580906 C A ITPR2 Missense_Mutation p.M2295I 0.18 tolerated(1) benign(0.001) TCGA-98-8021-01 12 26750013 26750013 G A ITPR2 Missense_Mutation p.P1353S 0.08 tolerated(0.51) benign(0.102) TCGA-98-8021-01 12 27786360 27786360 G C PPFIBP1 Missense_Mutation p.A11P 0.19 deleterious(0) unknown(0) TCGA-98-8021-01 12 30802083 30802083 C A IPO8 Missense_Mutation p.R752S 0.27 tolerated(0.13) benign(0.016) TCGA-98-8021-01 12 40722220 40722220 G A LRRK2 Silent p.V1905V 0.10 TCGA-98-8021-01 12 41410531 41410531 G - CNTN1 Frame_Shift_Del p.A745Hfs*30 0.34 TCGA-98-8021-01 12 4598986 4598986 G T C12orf4 Missense_Mutation p.T549K 0.15 tolerated(0.43) benign(0.113) TCGA-98-8021-01 12 46246383 46246383 G A ARID2 Missense_Mutation p.V1493I 0.16 deleterious_low_confidence(0.02) benign(0.07) TCGA-98-8021-01 12 49445791 49445791 C T KMT2D Missense_Mutation p.E559K 0.10 unknown(0) TCGA-98-8021-01 12 49942788 49942788 G A KCNH3 Missense_Mutation p.E434K 0.19 tolerated(0.59) benign(0.019) TCGA-98-8021-01 12 49993446 49993446 C T FAM186B Silent p.K659K 0.11 TCGA-98-8021-01 12 49993825 49993825 C G FAM186B Missense_Mutation p.R533T 0.16 tolerated(0.15) benign(0.009) TCGA-98-8021-01 12 50045797 50045797 G C FMNL3 Missense_Mutation p.P508A 0.27 tolerated(0.34) benign(0.029) TCGA-98-8021-01 12 50528461 50528461 C G CERS5 Missense_Mutation p.E299D 0.18 tolerated(0.14) benign(0.029) TCGA-98-8021-01 12 52188179 52188179 G A SCN8A Missense_Mutation p.D1517N 0.12 deleterious(0.01) possibly_damaging(0.786) TCGA-98-8021-01 12 52307103 52307103 C G ACVRL1 Silent p.L94L 0.11 TCGA-98-8021-01 12 52774149 52774149 G T KRT84 Missense_Mutation p.S474R 0.29 tolerated(0.34) benign(0.091) TCGA-98-8021-01 12 52827696 52827696 C G KRT75 Silent p.L131L 0.06 TCGA-98-8021-01 12 56364978 56364978 G T CDK2 Missense_Mutation p.D247Y 0.04 tolerated(0.15) possibly_damaging(0.605) TCGA-98-8021-01 12 56742755 56742755 C T STAT2 Missense_Mutation p.R510Q 0.20 tolerated(0.06) possibly_damaging(0.577) TCGA-98-8021-01 12 56755939 56755939 G A APOF Silent p.L17L 0.08 TCGA-98-8021-01 12 57600518 57600518 C G LRP1 Missense_Mutation p.H3951Q 0.12 benign(0.065) TCGA-98-8021-01 12 57857819 57857819 C T GLI1 Silent p.L46L 0.19 TCGA-98-8021-01 12 57864237 57864237 G A GLI1 Missense_Mutation p.E572K 0.08 tolerated(0.56) probably_damaging(0.993) TCGA-98-8021-01 12 62954328 62954328 G T MON2 Missense_Mutation p.S1156I 0.39 deleterious(0) probably_damaging(0.986) TCGA-98-8021-01 12 64238613 64238613 G C SRGAP1 Missense_Mutation p.R6P 0.07 deleterious(0) benign(0.015) TCGA-98-8021-01 12 6463954 6463954 G A SCNN1A Missense_Mutation p.P461S 0.08 tolerated(0.16) possibly_damaging(0.457) TCGA-98-8021-01 12 6696711 6696711 C G CHD4 Missense_Mutation p.E1240Q 0.06 deleterious(0.04) possibly_damaging(0.727) TCGA-98-8021-01 12 6703676 6703676 G C CHD4 Silent p.G754G 0.31 TCGA-98-8021-01 12 6765926 6765926 G A ING4 Nonsense_Mutation p.Q26* 0.06 TCGA-98-8021-01 12 70794014 70794014 G C KCNMB4 Missense_Mutation p.R121T 0.15 deleterious(0.01) possibly_damaging(0.783) TCGA-98-8021-01 12 71078514 71078514 C G PTPRR Missense_Mutation p.L443F 0.24 tolerated(0.06) possibly_damaging(0.683) TCGA-98-8021-01 12 72050630 72050630 G C ZFC3H1 Intron 0.08 TCGA-98-8021-01 12 7303149 7303149 G T CLSTN3 Missense_Mutation p.S752I 0.23 deleterious(0.04) benign(0.358) TCGA-98-8021-01 12 75444536 75444536 C A KCNC2 Nonsense_Mutation p.E417* 0.18 TCGA-98-8021-01 12 75445040 75445040 C T KCNC2 Missense_Mutation p.E249K 0.27 tolerated(0.35) benign(0.161) TCGA-98-8021-01 12 7640088 7640088 T C CD163 Silent p.G639G 0.28 TCGA-98-8021-01 12 77439978 77439978 C G E2F7 Missense_Mutation p.Q223H 0.14 deleterious(0) probably_damaging(0.914) TCGA-98-8021-01 12 80182444 80182444 G A PPP1R12A Missense_Mutation p.S929L 0.15 tolerated(0.06) benign(0) TCGA-98-8021-01 12 8374654 8374654 C G FAM90A1 Missense_Mutation p.D387H 0.17 tolerated(0.35) benign(0.231) TCGA-98-8021-01 12 9243982 9243982 T C A2M Missense_Mutation p.I762V 0.28 deleterious(0.01) probably_damaging(0.992) TCGA-98-8021-01 12 939276 939276 C G WNK1 Missense_Mutation p.P421A 0.14 deleterious(0) unknown(0) TCGA-98-8021-01 12 95867865 95867865 G C METAP2 5'UTR 0.42 TCGA-98-8021-01 13 103514715 103514715 G A BIVM-ERCC5 Missense_Mutation p.G832R 0.25 tolerated_low_confidence(0.24) benign(0.361) TCGA-98-8021-01 13 109496716 109496716 A C MYO16 Missense_Mutation p.K353Q 0.38 deleterious(0) probably_damaging(0.988) TCGA-98-8021-01 13 20025342 20025342 C T TPTE2 Silent p.K255K 0.10 TCGA-98-8021-01 13 25882042 25882042 G C NUPL1 Missense_Mutation p.G69A 0.26 tolerated(0.45) benign(0.011) TCGA-98-8021-01 13 32371395 32371395 C G RXFP2 Missense_Mutation p.S615C 0.14 deleterious(0) probably_damaging(0.997) TCGA-98-8021-01 13 36886481 36886481 C T SPG20 Missense_Mutation p.M539I 0.10 tolerated(0.22) benign(0.026) TCGA-98-8021-01 13 42465575 42465575 C A VWA8 Missense_Mutation p.R211L 0.53 deleterious(0) probably_damaging(0.961) TCGA-98-8021-01 13 46935644 46935644 G A KIAA0226L Nonsense_Mutation p.Q351* 0.22 TCGA-98-8021-01 13 50586885 50586885 C G TRIM13 Missense_Mutation p.S273C 0.21 tolerated(0.21) possibly_damaging(0.789) TCGA-98-8021-01 13 52313201 52313201 C T WDFY2 Silent p.L205L 0.17 TCGA-98-8021-01 13 52518358 52518358 G C ATP7B Missense_Mutation p.L1044V 0.46 tolerated(0.32) benign(0.134) TCGA-98-8021-01 13 52971601 52971601 G C THSD1 Missense_Mutation p.P263A 0.19 deleterious(0) probably_damaging(1) TCGA-98-8021-01 13 79189799 79189799 C T RNF219 Silent p.R699R 0.25 TCGA-98-8021-01 13 80910954 80910954 G C SPRY2 Nonsense_Mutation p.S296* 0.29 TCGA-98-8021-01 13 84454006 84454006 C T SLITRK1 Missense_Mutation p.R546H 0.43 tolerated(0.14) benign(0.009) TCGA-98-8021-01 13 99127078 99127078 C G STK24 Silent p.S210S 0.09 TCGA-98-8021-01 14 103406631 103406631 C G CDC42BPB Missense_Mutation p.S1480T 0.22 deleterious(0.02) possibly_damaging(0.528) TCGA-98-8021-01 14 104053637 104053637 G C APOPT1 Missense_Mutation p.E151Q 0.10 deleterious(0.02) probably_damaging(0.984) TCGA-98-8021-01 14 104206858 104206858 G A PPP1R13B Missense_Mutation p.S632F 0.14 tolerated(0.61) benign(0.206) TCGA-98-8021-01 14 104208252 104208252 G A PPP1R13B Missense_Mutation p.S566F 0.17 tolerated(0.08) possibly_damaging(0.562) TCGA-98-8021-01 14 105360659 105360659 C G CEP170B Missense_Mutation p.L1437V 0.06 tolerated(0.13) benign(0.043) TCGA-98-8021-01 14 105419920 105419920 C G AHNAK2 Missense_Mutation p.R623T 0.11 benign(0.017) TCGA-98-8021-01 14 106780561 106780561 C G IGHV4-28 Missense_Mutation p.K101N 0.05 tolerated(0.05) benign(0.006) TCGA-98-8021-01 14 20502713 20502713 T C OR4K13 Missense_Mutation p.I69V 0.17 tolerated(0.4) benign(0.001) TCGA-98-8021-01 14 21238571 21238571 C A EDDM3B Missense_Mutation p.R88S 0.42 deleterious(0.01) probably_damaging(0.982) TCGA-98-8021-01 14 24534255 24534255 C A LRRC16B Missense_Mutation p.H1057N 0.22 tolerated(1) benign(0.403) TCGA-98-8021-01 14 24886341 24886341 G T NYNRIN Nonsense_Mutation p.E1796* 0.07 TCGA-98-8021-01 14 26918047 26918047 G A NOVA1 Silent p.I214I 0.17 TCGA-98-8021-01 14 31619240 31619240 G A HECTD1 Missense_Mutation p.S707L 0.06 deleterious(0) probably_damaging(0.994) TCGA-98-8021-01 14 34269463 34269463 G T NPAS3 Silent p.T650T 0.11 TCGA-98-8021-01 14 52520487 52520487 C T NID2 Silent p.P413P 0.25 TCGA-98-8021-01 14 62212452 62212452 C G HIF1A Nonsense_Mutation p.S773* 0.13 TCGA-98-8021-01 14 64491138 64491138 G A SYNE2 Missense_Mutation p.R1934Q 0.11 benign(0.1) TCGA-98-8021-01 14 65260498 65260498 C A SPTB Missense_Mutation p.G628V 0.46 tolerated(0.05) benign(0.281) TCGA-98-8021-01 14 65569037 65569037 G C MAX Missense_Mutation p.I7M 0.38 tolerated(0.08) benign(0.362) TCGA-98-8021-01 14 69347705 69347705 T A ACTN1 Missense_Mutation p.E652V 0.27 tolerated(0.09) possibly_damaging(0.475) TCGA-98-8021-01 14 73407079 73407079 G C DCAF4 Silent p.R115R 0.29 TCGA-98-8021-01 14 73730916 73730916 C G PAPLN Intron 0.21 TCGA-98-8021-01 14 73750907 73750907 G C NUMB Missense_Mutation p.F277L 0.26 tolerated(0.11) probably_damaging(0.951) TCGA-98-8021-01 14 77491951 77491951 G A IRF2BPL Nonsense_Mutation p.Q729* 0.13 TCGA-98-8021-01 14 78142174 78142174 A C ALKBH1 Missense_Mutation p.Y189D 0.39 tolerated(0.06) probably_damaging(0.936) TCGA-98-8021-01 14 81421960 81421960 G A TSHR 5'UTR 0.19 TCGA-98-8021-01 14 81610669 81610669 C T TSHR Missense_Mutation p.S756L 0.18 deleterious_low_confidence(0.03) benign(0.075) TCGA-98-8021-01 14 91247137 91247137 C G TTC7B Silent p.L130L 0.21 TCGA-98-8021-01 14 93424708 93424708 C A ITPK1 Missense_Mutation p.A170S 0.08 tolerated(0.32) possibly_damaging(0.831) TCGA-98-8021-01 14 94754640 94754640 G A SERPINA10 Silent p.L325L 0.23 TCGA-98-8021-01 14 95054193 95054193 C T SERPINA5 Missense_Mutation p.S165F 0.32 deleterious(0.04) benign(0.013) TCGA-98-8021-01 15 22368775 22368775 C A OR4M2 Missense_Mutation p.A67D 0.09 deleterious(0) probably_damaging(0.999) TCGA-98-8021-01 15 22368917 22368917 G C OR4M2 Missense_Mutation p.L114F 0.08 tolerated(0.15) probably_damaging(0.999) TCGA-98-8021-01 15 23889466 23889466 C G MAGEL2 Missense_Mutation p.D539H 0.38 tolerated(0.11) probably_damaging(0.975) TCGA-98-8021-01 15 23889582 23889582 G A MAGEL2 Missense_Mutation p.S500F 0.28 deleterious(0.01) possibly_damaging(0.837) TCGA-98-8021-01 15 34646037 34646037 C G NUTM1 Missense_Mutation p.L319V 0.26 tolerated(0.09) benign(0.103) TCGA-98-8021-01 15 38782752 38782752 G C RASGRP1 3'UTR 0.13 TCGA-98-8021-01 15 40916425 40916425 C T CASC5 Silent p.L1347L 0.11 TCGA-98-8021-01 15 41829205 41829205 C T RPAP1 Missense_Mutation p.G40D 0.27 tolerated(0.34) benign(0.002) TCGA-98-8021-01 15 42134770 42134770 G T PLA2G4B Nonsense_Mutation p.E473* 0.29 TCGA-98-8021-01 15 42138928 42138928 G A PLA2G4B Silent p.L845L 0.09 TCGA-98-8021-01 15 42519906 42519906 C G TMEM87A Intron 0.13 TCGA-98-8021-01 15 42519936 42519936 C T TMEM87A Missense_Mutation p.M424I 0.18 deleterious(0.01) benign(0.309) TCGA-98-8021-01 15 43026535 43026535 G A CDAN1 Silent p.S382S 0.14 TCGA-98-8021-01 15 43348570 43348570 G A UBR1 Missense_Mutation p.S418L 0.07 deleterious(0) benign(0.415) TCGA-98-8021-01 15 44053701 44053701 C T PDIA3 Silent p.F148F 0.08 TCGA-98-8021-01 15 44057673 44057673 C T PDIA3 Missense_Mutation p.H210Y 0.10 tolerated(0.51) benign(0.022) TCGA-98-8021-01 15 44877983 44877983 G A SPG11 Missense_Mutation p.H1658Y 0.16 tolerated(0.05) benign(0.016) TCGA-98-8021-01 15 52427866 52427866 C T GNB5 Missense_Mutation p.D239N 0.12 deleterious(0) probably_damaging(1) TCGA-98-8021-01 15 52671850 52671850 C A MYO5A Missense_Mutation p.C727F 0.19 deleterious(0) probably_damaging(1) TCGA-98-8021-01 15 56756328 56756328 G C MNS1 Missense_Mutation p.Q41E 0.22 tolerated(0.62) benign(0.075) TCGA-98-8021-01 15 59466427 59466427 C A MYO1E Nonsense_Mutation p.E688* 0.09 TCGA-98-8021-01 15 60297346 60297346 C A FOXB1 Missense_Mutation p.R62S 0.30 deleterious(0) probably_damaging(1) TCGA-98-8021-01 15 66610881 66610881 G C DIS3L Missense_Mutation p.Q363H 0.24 tolerated(0.15) benign(0.003) TCGA-98-8021-01 15 71300862 71300862 A G LRRC49 Silent p.A443A 0.17 TCGA-98-8021-01 15 72559864 72559864 C A PARP6 5'UTR 0.20 TCGA-98-8021-01 15 72580886 72580886 C T CELF6 Silent p.Q389Q 0.13 TCGA-98-8021-01 15 75664332 75664332 G C SIN3A Missense_Mutation p.F1270L 0.14 tolerated_low_confidence(0.7) benign(0) TCGA-98-8021-01 15 75694307 75694307 C T SIN3A Missense_Mutation p.R471Q 0.08 deleterious(0) possibly_damaging(0.685) TCGA-98-8021-01 15 79058570 79058570 C T ADAMTS7 Missense_Mutation p.G1228E 0.15 tolerated(0.66) benign(0.075) TCGA-98-8021-01 15 80423625 80423625 G A ZFAND6 Silent p.V156V 0.11 TCGA-98-8021-01 15 80464526 80464526 G T FAH Missense_Mutation p.E214D 0.29 tolerated(0.26) benign(0.003) TCGA-98-8021-01 15 85326839 85326839 C G ZNF592 Silent p.L311L 0.14 TCGA-98-8021-01 15 86122308 86122308 G C AKAP13 Missense_Mutation p.E337Q 0.21 tolerated(0.22) benign(0.173) TCGA-98-8021-01 15 90020760 90020760 T C RHCG Missense_Mutation p.Y367C 0.33 deleterious(0) probably_damaging(1) TCGA-98-8021-01 16 10032240 10032240 A T GRIN2A Missense_Mutation p.F195I 0.26 deleterious(0) probably_damaging(0.974) TCGA-98-8021-01 16 11260399 11260399 G C CLEC16A Missense_Mutation p.Q932H 0.14 tolerated(0.06) benign(0.004) TCGA-98-8021-01 16 1544341 1544341 C T TELO2 Missense_Mutation p.S20L 0.13 deleterious(0.01) benign(0.371) TCGA-98-8021-01 16 1544366 1544366 C G TELO2 Missense_Mutation p.I28M 0.12 deleterious(0) probably_damaging(0.916) TCGA-98-8021-01 16 1836756 1836756 A T NUBP2 Splice_Site p.X46_splice 0.47 TCGA-98-8021-01 16 20043334 20043334 A T GPR139 Missense_Mutation p.L262Q 0.46 tolerated(0.26) possibly_damaging(0.557) TCGA-98-8021-01 16 20370701 20370701 C T PDILT Silent p.V565V 0.37 TCGA-98-8021-01 16 20966145 20966145 G A DNAH3 Silent p.F3687F 0.25 TCGA-98-8021-01 16 27460459 27460459 A G IL21R Missense_Mutation p.D491G 0.14 deleterious(0) probably_damaging(1) TCGA-98-8021-01 16 27561059 27561059 G C GTF3C1 Silent p.L51L 0.11 TCGA-98-8021-01 16 28935754 28935754 C A RABEP2 Nonsense_Mutation p.E82* 0.15 TCGA-98-8021-01 16 29818703 29818703 C G MAZ Missense_Mutation p.F199L 0.18 deleterious(0.02) possibly_damaging(0.682) TCGA-98-8021-01 16 29827991 29827991 G A PAGR1 Missense_Mutation p.E49K 0.18 tolerated(0.22) benign(0.084) TCGA-98-8021-01 16 30004655 30004655 C G HIRIP3 Missense_Mutation p.G515A 0.14 tolerated(0.06) possibly_damaging(0.617) TCGA-98-8021-01 16 30080850 30080850 G C ALDOA Missense_Mutation p.D273H 0.13 deleterious(0.01) probably_damaging(0.975) TCGA-98-8021-01 16 30365998 30365998 G A CD2BP2 Missense_Mutation p.P2L 0.25 tolerated(0.12) benign(0.003) TCGA-98-8021-01 16 30666725 30666725 C T PRR14 Missense_Mutation p.S433L 0.11 deleterious(0) possibly_damaging(0.897) TCGA-98-8021-01 16 30749789 30749789 G A SRCAP Missense_Mutation p.E2810K 0.06 unknown(0) TCGA-98-8021-01 16 31271357 31271357 C T ITGAM 5'UTR 0.55 TCGA-98-8021-01 16 31427571 31427571 G C ITGAD Missense_Mutation p.C774S 0.25 deleterious(0) probably_damaging(1) TCGA-98-8021-01 16 31471241 31471241 G T ARMC5 Silent p.A132A 0.11 TCGA-98-8021-01 16 31473843 31473843 G T ARMC5 Missense_Mutation p.E325D 0.32 tolerated(0.23) benign(0.027) TCGA-98-8021-01 16 31500538 31500538 C T SLC5A2 Missense_Mutation p.S515L 0.17 deleterious(0) probably_damaging(0.998) TCGA-98-8021-01 16 31510656 31510656 G A C16orf58 Silent p.F189F 0.12 TCGA-98-8021-01 16 32264937 32264937 G C TP53TG3D Missense_Mutation p.R88P 0.10 tolerated_low_confidence(0.06) possibly_damaging(0.655) TCGA-98-8021-01 16 3350337 3350337 G C TIGD7 Nonsense_Mutation p.S93* 0.08 TCGA-98-8021-01 16 3779752 3779752 C T CREBBP Missense_Mutation p.E1766K 0.39 unknown(0) TCGA-98-8021-01 16 48201483 48201483 C A ABCC11 Missense_Mutation p.C1327F 0.12 deleterious(0) probably_damaging(0.996) TCGA-98-8021-01 16 4924873 4924873 C T UBN1 Missense_Mutation p.S821F 0.11 deleterious_low_confidence(0.01) benign(0.051) TCGA-98-8021-01 16 4924892 4924892 C T UBN1 Silent p.L827L 0.12 TCGA-98-8021-01 16 55579728 55579728 G T LPCAT2 Nonsense_Mutation p.E312* 0.20 TCGA-98-8021-01 16 57786825 57786825 C T KATNB1 Silent p.I280I 0.17 TCGA-98-8021-01 16 58438509 58438509 T A GINS3 Missense_Mutation p.F215Y 0.07 tolerated(0.08) possibly_damaging(0.638) TCGA-98-8021-01 16 61687754 61687754 C G CDH8 Missense_Mutation p.D720H 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-98-8021-01 16 67286591 67286591 C T SLC9A5 Silent p.L112L 0.20 TCGA-98-8021-01 16 67915253 67915253 G C EDC4 Missense_Mutation p.D908H 0.08 deleterious(0) probably_damaging(0.999) TCGA-98-8021-01 16 67984310 67984310 G C SLC12A4 Nonsense_Mutation p.S516* 0.26 TCGA-98-8021-01 16 70064954 70064954 C G MIR1972-2 3'Flank 0.23 TCGA-98-8021-01 16 70284911 70284911 G A EXOSC6 3'UTR 0.25 TCGA-98-8021-01 16 70602312 70602312 G A SF3B3 Missense_Mutation p.D1027N 0.24 deleterious(0) probably_damaging(0.956) TCGA-98-8021-01 16 70719718 70719718 C A MTSS1L 5'UTR 0.38 TCGA-98-8021-01 16 72153270 72153270 G A PMFBP1 Intron 0.05 TCGA-98-8021-01 16 723605 723605 G A RHOT2 Silent p.%3D 0.22 TCGA-98-8021-01 16 74493616 74493616 G C GLG1 Silent p.V1036V 0.14 TCGA-98-8021-01 16 74943487 74943487 C G WDR59 Silent p.T518T 0.28 TCGA-98-8021-01 16 76587318 76587318 C A RP11-58C22.1 Missense_Mutation p.T2K 0.12 tolerated(1) benign(0) TCGA-98-8021-01 16 81962228 81962228 C T PLCG2 Silent p.V860V 0.17 TCGA-98-8021-01 16 84132811 84132811 G A MBTPS1 Nonsense_Mutation p.R90* 0.11 TCGA-98-8021-01 16 87885379 87885379 G A SLC7A5 Silent p.L205L 0.29 TCGA-98-8021-01 16 89178534 89178534 G T ACSF3 Missense_Mutation p.R286L 0.17 tolerated(0.07) benign(0.055) TCGA-98-8021-01 17 10227533 10227533 T A MYH13 Nonsense_Mutation p.K914* 0.52 TCGA-98-8021-01 17 10265549 10265549 A T MYH13 Missense_Mutation p.W131R 0.26 deleterious(0.04) probably_damaging(0.999) TCGA-98-8021-01 17 11556228 11556228 C A DNAH9 Missense_Mutation p.S835Y 0.57 benign(0.058) TCGA-98-8021-01 17 1703284 1703284 C T SMYD4 Silent p.V468V 0.18 TCGA-98-8021-01 17 1704273 1704273 C T SMYD4 Missense_Mutation p.E139K 0.06 deleterious(0.04) possibly_damaging(0.829) TCGA-98-8021-01 17 26108181 26108181 G A NOS2 Nonsense_Mutation p.Q249* 0.20 TCGA-98-8021-01 17 27977730 27977730 C G SSH2 Missense_Mutation p.E363Q 0.25 deleterious(0) probably_damaging(0.998) TCGA-98-8021-01 17 30310090 30310091 AA T SUZ12 Frame_Shift_Del p.K330Nfs*77 0.23 TCGA-98-8021-01 17 3119135 3119135 C T OR1A1 Missense_Mutation p.S74L 0.19 deleterious(0.02) possibly_damaging(0.78) TCGA-98-8021-01 17 34247222 34247222 C G RDM1 Missense_Mutation p.R241T 0.30 tolerated(0.4) benign(0.007) TCGA-98-8021-01 17 34945877 34945877 C G GGNBP2 3'UTR 0.17 TCGA-98-8021-01 17 37374337 37374337 G A STAC2 Silent p.L60L 0.25 TCGA-98-8021-01 17 39017893 39017893 G - KRT12 3'UTR 0.28 TCGA-98-8021-01 17 40344986 40344986 C T GHDC Missense_Mutation p.D109N 0.30 tolerated(0.33) benign(0.001) TCGA-98-8021-01 17 42275038 42275038 C T ATXN7L3 Missense_Mutation p.E38K 0.25 deleterious(0) probably_damaging(0.925) TCGA-98-8021-01 17 42295595 42295595 C T UBTF Translation_Start_Site p.M1? 0.16 deleterious_low_confidence(0) possibly_damaging(0.625) TCGA-98-8021-01 17 4994836 4994836 G C ZFP3 Missense_Mutation p.E13Q 0.20 deleterious(0.02) benign(0.287) TCGA-98-8021-01 17 56384268 56384268 T C BZRAP1 Missense_Mutation p.Y1682C 0.38 deleterious(0) probably_damaging(1) TCGA-98-8021-01 17 57297984 57297984 C T GDPD1 Missense_Mutation p.A5V 0.27 tolerated(0.48) benign(0.003) TCGA-98-8021-01 17 59115393 59115393 C T BCAS3 Nonsense_Mutation p.R651* 0.21 TCGA-98-8021-01 17 59534897 59534897 G A TBX4 Splice_Site p.X63_splice 0.21 TCGA-98-8021-01 17 61996184 61996184 G T GH1 5'Flank 0.24 TCGA-98-8021-01 17 62020352 62020352 T C SCN4A Silent p.T1374T 0.34 TCGA-98-8021-01 17 65734338 65734338 G C NOL11 Missense_Mutation p.E544Q 0.25 tolerated(0.12) benign(0.333) TCGA-98-8021-01 17 65735103 65735103 G C NOL11 Missense_Mutation p.D607H 0.29 deleterious(0) possibly_damaging(0.743) TCGA-98-8021-01 17 72368484 72368484 C G GPR142 Silent p.L378L 0.24 TCGA-98-8021-01 17 7483192 7483192 G C CD68 Silent p.V38V 0.26 TCGA-98-8021-01 17 7579495 7579495 G - TP53 Frame_Shift_Del p.R65Efs*58 0.33 TCGA-98-8021-01 17 7678193 7678193 G A DNAH2 Missense_Mutation p.D1540N 0.25 probably_damaging(0.995) TCGA-98-8021-01 17 78163557 78163557 G C CARD14 Missense_Mutation p.E283D 0.38 deleterious(0.02) possibly_damaging(0.725) TCGA-98-8021-01 17 80121119 80121119 C G CCDC57 Missense_Mutation p.R666T 0.14 deleterious(0) probably_damaging(0.969) TCGA-98-8021-01 17 80436782 80436782 C T NARF Silent p.F209F 0.29 TCGA-98-8021-01 18 12277180 12277180 C G CIDEA Missense_Mutation p.L191V 0.13 tolerated(0.08) benign(0) TCGA-98-8021-01 18 12340361 12340361 G A AFG3L2 Nonsense_Mutation p.Q607* 0.17 TCGA-98-8021-01 18 22040826 22040826 A C HRH4 Missense_Mutation p.N45T 0.21 tolerated(0.12) benign(0.081) TCGA-98-8021-01 18 23618583 23618583 C T SS18 Silent p.G272G 0.25 TCGA-98-8021-01 18 23724544 23724544 A G PSMA8 Missense_Mutation p.I42V 0.36 tolerated(0.51) probably_damaging(0.962) TCGA-98-8021-01 18 2705733 2705733 A G SMCHD1 Missense_Mutation p.I628M 0.41 deleterious(0) possibly_damaging(0.878) TCGA-98-8021-01 18 28908270 28908270 C T DSG1 Missense_Mutation p.T112I 0.22 deleterious(0) probably_damaging(0.999) TCGA-98-8021-01 18 29340662 29340662 C A SLC25A52 5'UTR 0.24 TCGA-98-8021-01 18 29340663 29340663 C A SLC25A52 5'UTR 0.25 TCGA-98-8021-01 18 31319331 31319331 A G ASXL3 Missense_Mutation p.S655G 0.50 benign(0.422) TCGA-98-8021-01 18 31323889 31323889 G A ASXL3 Silent p.L1359L 0.18 TCGA-98-8021-01 18 3255767 3255767 A G MYL12A Missense_Mutation p.R123G 0.10 deleterious(0.02) benign(0.329) TCGA-98-8021-01 18 33726255 33726255 G A ELP2 Missense_Mutation p.D411N 0.09 tolerated(0.26) benign(0.019) TCGA-98-8021-01 18 33840072 33840072 C G MOCOS Missense_Mutation p.I781M 0.08 deleterious(0.04) benign(0.056) TCGA-98-8021-01 18 46906050 46906050 G T DYM Nonsense_Mutation p.S91* 0.09 TCGA-98-8021-01 18 48447504 48447504 C A ME2 Missense_Mutation p.Q335K 0.22 tolerated(0.1) benign(0) TCGA-98-8021-01 18 54346655 54346655 T C WDR7 Silent p.S84S 0.18 TCGA-98-8021-01 18 59813157 59813157 C T PIGN Missense_Mutation p.D303N 0.15 deleterious(0) probably_damaging(0.951) TCGA-98-8021-01 18 61460416 61460416 A - SERPINB7 Frame_Shift_Del p.R82Efs*6 0.18 TCGA-98-8021-01 18 64239302 64239302 C A CDH19 Missense_Mutation p.W47L 0.24 deleterious(0) probably_damaging(0.999) TCGA-98-8021-01 18 67993430 67993430 G C SOCS6 Missense_Mutation p.R509P 0.49 deleterious(0.01) probably_damaging(1) TCGA-98-8021-01 18 70417752 70417752 G T NETO1 Silent p.I362I 0.20 TCGA-98-8021-01 18 72223570 72223570 C T CNDP1 Intron 0.22 TCGA-98-8021-01 18 72228152 72228152 C A CNDP1 Missense_Mutation p.P122H 0.25 deleterious(0) probably_damaging(0.944) TCGA-98-8021-01 18 77475073 77475073 G T CTDP1 Missense_Mutation p.R538L 0.26 deleterious(0.02) benign(0.014) TCGA-98-8021-01 18 77806115 77806115 G A RBFA Missense_Mutation p.R331K 0.07 tolerated(1) benign(0.016) TCGA-98-8021-01 19 1003365 1003365 G A GRIN3B Silent p.P221P 0.27 TCGA-98-8021-01 19 10229604 10229604 G A EIF3G Silent p.I60I 0.14 TCGA-98-8021-01 19 10670310 10670310 C G KRI1 Missense_Mutation p.E340D 0.24 deleterious(0.04) benign(0.271) TCGA-98-8021-01 19 12059318 12059318 G A ZNF700 Missense_Mutation p.G160E 0.05 tolerated(0.15) benign(0.343) TCGA-98-8021-01 19 13041137 13041137 C T FARSA Missense_Mutation p.E135K 0.22 tolerated(0.83) benign(0.001) TCGA-98-8021-01 19 13397683 13397683 C G CACNA1A Missense_Mutation p.E1063Q 0.15 benign(0.023) TCGA-98-8021-01 19 13409682 13409682 C T CACNA1A Missense_Mutation p.R922Q 0.23 possibly_damaging(0.776) TCGA-98-8021-01 19 14267775 14267775 C A LPHN1 Silent p.A981A 0.11 TCGA-98-8021-01 19 15917927 15917927 G A OR10H1 Silent p.F307F 0.28 TCGA-98-8021-01 19 16283973 16283973 C T CIB3 Missense_Mutation p.R29K 0.31 tolerated(0.31) benign(0.002) TCGA-98-8021-01 19 17213232 17213232 C T MYO9B Silent p.I235I 0.07 TCGA-98-8021-01 19 17305402 17305402 G C MYO9B Missense_Mutation p.E1056Q 0.22 tolerated(0.1) benign(0.046) TCGA-98-8021-01 19 17611439 17611439 C G SLC27A1 Nonsense_Mutation p.S490* 0.33 TCGA-98-8021-01 19 17886845 17886845 G A FCHO1 Missense_Mutation p.E353K 0.26 deleterious(0.01) possibly_damaging(0.801) TCGA-98-8021-01 19 1800370 1800370 G A ATP8B3 Missense_Mutation p.H411Y 0.10 tolerated(0.38) possibly_damaging(0.517) TCGA-98-8021-01 19 18313438 18313438 A G RAB3A Missense_Mutation p.F38S 0.25 deleterious(0.05) possibly_damaging(0.669) TCGA-98-8021-01 19 19756793 19756793 G T ATP13A1 Missense_Mutation p.Q1084K 0.22 tolerated(0.5) benign(0.001) TCGA-98-8021-01 19 2098450 2098450 G A IZUMO4 Splice_Site p.X179_splice 0.33 TCGA-98-8021-01 19 2108719 2108719 G A AP3D1 Silent p.I1173I 0.25 TCGA-98-8021-01 19 22941734 22941734 G A ZNF99 Missense_Mutation p.S326L 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-98-8021-01 19 23556604 23556604 G A ZNF91 Silent p.L65L 0.19 TCGA-98-8021-01 19 23937676 23937676 C G ZNF681 Missense_Mutation p.E59Q 0.08 tolerated(0.08) possibly_damaging(0.727) TCGA-98-8021-01 19 33587287 33587287 G C GPATCH1 Missense_Mutation p.E263Q 0.11 tolerated(0.09) benign(0.046) TCGA-98-8021-01 19 34699930 34699930 G T LSM14A Missense_Mutation p.R171I 0.21 tolerated(0.35) benign(0.408) TCGA-98-8021-01 19 34884909 34884909 G C GPI Missense_Mutation p.E345Q 0.14 tolerated_low_confidence(0.27) probably_damaging(0.99) TCGA-98-8021-01 19 34949731 34949731 G C UBA2 Missense_Mutation p.D435H 0.18 tolerated(0.07) possibly_damaging(0.634) TCGA-98-8021-01 19 35250909 35250909 C T ZNF599 Missense_Mutation p.R266H 0.37 tolerated(0.07) benign(0.008) TCGA-98-8021-01 19 3586587 3586587 G C GIPC3 Missense_Mutation p.R107P 0.17 deleterious(0) probably_damaging(0.957) TCGA-98-8021-01 19 35940932 35940932 G C FFAR2 Missense_Mutation p.E106Q 0.24 deleterious(0) probably_damaging(0.997) TCGA-98-8021-01 19 35941097 35941097 G C FFAR2 Missense_Mutation p.E161Q 0.18 tolerated(0.56) benign(0.011) TCGA-98-8021-01 19 36159353 36159353 C T UPK1A Intron 0.19 TCGA-98-8021-01 19 36215929 36215929 G T KMT2B Missense_Mutation p.G1157C 0.37 probably_damaging(0.996) TCGA-98-8021-01 19 36223675 36223675 G T KMT2B Silent p.V2075V 0.36 TCGA-98-8021-01 19 3623847 3623847 C G CACTIN Missense_Mutation p.E161Q 0.11 deleterious(0.04) probably_damaging(0.992) TCGA-98-8021-01 19 36334402 36334402 A T NPHS1 Missense_Mutation p.L769H 0.23 deleterious(0.03) probably_damaging(0.984) TCGA-98-8021-01 19 36348051 36348051 C A KIRREL2 Silent p.L10L 0.19 TCGA-98-8021-01 19 36591743 36591743 C G WDR62 Missense_Mutation p.L945V 0.43 tolerated(0.58) possibly_damaging(0.622) TCGA-98-8021-01 19 36883921 36883921 G C ZFP82 Missense_Mutation p.Q441E 0.15 tolerated(0.13) possibly_damaging(0.487) TCGA-98-8021-01 19 37383008 37383008 G C ZNF829 Missense_Mutation p.Q310E 0.18 tolerated(0.19) probably_damaging(0.954) TCGA-98-8021-01 19 37441993 37441993 G A ZNF568 3'Flank 0.26 TCGA-98-8021-01 19 3759836 3759836 C T APBA3 Missense_Mutation p.E143K 0.07 tolerated(0.13) benign(0.014) TCGA-98-8021-01 19 38089339 38089339 G T ZNF540 5'UTR 0.16 TCGA-98-8021-01 19 3825379 3825379 C T ZFR2 Silent p.G354G 0.27 TCGA-98-8021-01 19 38795929 38795929 G C YIF1B 3'UTR 0.33 TCGA-98-8021-01 19 39101924 39101924 C G MAP4K1 Missense_Mutation p.K229N 0.19 deleterious(0) probably_damaging(0.999) TCGA-98-8021-01 19 39103379 39103379 C T MAP4K1 Missense_Mutation p.M179I 0.07 deleterious(0) possibly_damaging(0.692) TCGA-98-8021-01 19 39104695 39104695 C T MAP4K1 Missense_Mutation p.E150K 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-98-8021-01 19 39876963 39876963 C A PAF1 Nonsense_Mutation p.E422* 0.08 TCGA-98-8021-01 19 41384763 41384763 C T CYP2A7 Missense_Mutation p.E245K 0.28 tolerated(1) benign(0.074) TCGA-98-8021-01 19 4237098 4237098 G A EBI3 3'UTR 0.37 TCGA-98-8021-01 19 42526392 42526392 C A GRIK5 Splice_Site p.X529_splice 0.14 TCGA-98-8021-01 19 42740779 42740779 G T AC006486.9 Silent p.T128T 0.16 TCGA-98-8021-01 19 42796616 42796616 C G CIC Nonsense_Mutation p.S1058* 0.31 TCGA-98-8021-01 19 43359758 43359758 G A PSG10P RNA 0.11 TCGA-98-8021-01 19 4355017 4355017 G C MPND Missense_Mutation p.Q306H 0.15 tolerated(0.39) possibly_damaging(0.887) TCGA-98-8021-01 19 4364097 4364097 C T SH3GL1 Silent p.L151L 0.11 TCGA-98-8021-01 19 46289955 46289955 C G DMWD Missense_Mutation p.A267P 0.09 deleterious(0.01) benign(0.068) TCGA-98-8021-01 19 46313869 46313869 C T RSPH6A Missense_Mutation p.E294K 0.22 deleterious(0.01) possibly_damaging(0.897) TCGA-98-8021-01 19 463874 463874 C T ODF3L2 Silent p.A280A 0.24 TCGA-98-8021-01 19 49142655 49142655 G A CA11 Silent p.F234F 0.24 TCGA-98-8021-01 19 49573328 49573328 C T KCNA7 Missense_Mutation p.E455K 0.10 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-98-8021-01 19 49573442 49573442 C A KCNA7 Missense_Mutation p.D417Y 0.08 deleterious_low_confidence(0.04) possibly_damaging(0.541) TCGA-98-8021-01 19 49573860 49573860 C T KCNA7 Silent p.L277L 0.08 TCGA-98-8021-01 19 49652580 49652580 G A PPFIA3 Missense_Mutation p.E1118K 0.14 deleterious(0.01) possibly_damaging(0.894) TCGA-98-8021-01 19 50158104 50158104 G A SCAF1 Missense_Mutation p.E1199K 0.14 possibly_damaging(0.486) TCGA-98-8021-01 19 50204638 50204638 G T CPT1C Missense_Mutation p.R173L 0.22 deleterious(0.02) possibly_damaging(0.823) TCGA-98-8021-01 19 50266427 50266427 C G TSKS Missense_Mutation p.E26D 0.14 tolerated(0.1) benign(0.034) TCGA-98-8021-01 19 50266456 50266456 C T TSKS Missense_Mutation p.E17K 0.13 deleterious(0) probably_damaging(0.996) TCGA-98-8021-01 19 50961902 50961902 G C MYBPC2 Missense_Mutation p.K799N 0.09 tolerated(0.07) possibly_damaging(0.875) TCGA-98-8021-01 19 51021941 51021941 G A LRRC4B Silent p.P343P 0.25 TCGA-98-8021-01 19 51466581 51466581 A T KLK6 Missense_Mutation p.L141Q 0.29 deleterious(0.03) probably_damaging(0.992) TCGA-98-8021-01 19 51960834 51960834 C T SIGLEC8 Missense_Mutation p.R205H 0.23 tolerated(0.56) benign(0.001) TCGA-98-8021-01 19 52003345 52003345 G T SIGLEC12 Missense_Mutation p.Q213K 0.26 tolerated(0.3) possibly_damaging(0.592) TCGA-98-8021-01 19 52376886 52376886 G A ZNF577 Silent p.L119L 0.18 TCGA-98-8021-01 19 52618111 52618111 C G ZNF616 Missense_Mutation p.G769A 0.17 tolerated(0.06) probably_damaging(0.957) TCGA-98-8021-01 19 52869207 52869207 A C ZNF610 Missense_Mutation p.E192D 0.26 tolerated(0.57) benign(0.017) TCGA-98-8021-01 19 53344028 53344028 T G ZNF468 Missense_Mutation p.M507L 0.25 tolerated(0.63) benign(0.001) TCGA-98-8021-01 19 53885658 53885658 G T ZNF525 3'UTR 0.13 TCGA-98-8021-01 19 53912239 53912239 G A ZNF765 Silent p.R477R 0.08 TCGA-98-8021-01 19 54377243 54377243 G A MYADM Missense_Mutation p.E154K 0.15 deleterious(0) probably_damaging(0.996) TCGA-98-8021-01 19 54648012 54648012 G A CNOT3 Missense_Mutation p.E143K 0.12 deleterious(0) probably_damaging(0.994) TCGA-98-8021-01 19 55263863 55263863 G C KIR2DL3 Missense_Mutation p.L306F 0.17 tolerated(0.09) probably_damaging(0.979) TCGA-98-8021-01 19 55341613 55341613 C T KIR3DL1 Silent p.F406F 0.16 TCGA-98-8021-01 19 55451671 55451671 G T NLRP7 Nonsense_Mutation p.Y172* 0.24 TCGA-98-8021-01 19 55591132 55591132 C T EPS8L1 Silent p.V64V 0.18 TCGA-98-8021-01 19 55670703 55670703 G A DNAAF3 Silent p.F518F 0.06 TCGA-98-8021-01 19 5604795 5604795 C G SAFB2 Intron 0.12 TCGA-98-8021-01 19 56160823 56160823 G T CCDC106 Missense_Mutation p.K62N 0.21 deleterious(0) benign(0.23) TCGA-98-8021-01 19 57060365 57060365 A C ZFP28 Missense_Mutation p.K188Q 0.33 deleterious(0.04) benign(0.04) TCGA-98-8021-01 19 57910160 57910160 C T ZNF548 Missense_Mutation p.L181F 0.14 tolerated(0.22) benign(0.099) TCGA-98-8021-01 19 58049921 58049921 C T ZNF549 Missense_Mutation p.L517F 0.09 tolerated(0.25) possibly_damaging(0.515) TCGA-98-8021-01 19 6848025 6848025 G T VAV1 Nonsense_Mutation p.E677* 0.16 TCGA-98-8021-01 19 7172374 7172374 G A INSR Nonsense_Mutation p.R399* 0.13 TCGA-98-8021-01 19 7607746 7607746 C T PNPLA6 Nonsense_Mutation p.Q497* 0.10 TCGA-98-8021-01 19 9071174 9071174 C A MUC16 Silent p.V5424V 0.17 TCGA-98-8021-01 19 9084067 9084067 G T MUC16 Missense_Mutation p.S2583Y 0.06 unknown(0) TCGA-98-8021-01 19 9361848 9361848 G T OR7E24 Silent p.P43P 0.23 TCGA-98-8021-01 19 9801005 9801005 T C ZNF812 Missense_Mutation p.K392E 0.09 deleterious(0.02) probably_damaging(0.995) TCGA-98-8021-01 1 100155383 100155383 G C PALMD Missense_Mutation p.D523H 0.22 tolerated(0.26) benign(0.01) TCGA-98-8021-01 1 100591446 100591446 G C SASS6 Missense_Mutation p.H40D 0.27 deleterious(0.02) benign(0.196) TCGA-98-8021-01 1 10228247 10228247 C G UBE4B Silent p.R1084R 0.21 TCGA-98-8021-01 1 103491778 103491778 C T COL11A1 Silent p.Q297Q 0.20 TCGA-98-8021-01 1 110304367 110304367 G A EPS8L3 Missense_Mutation p.S2L 0.26 deleterious(0) probably_damaging(0.999) TCGA-98-8021-01 1 110584182 110584182 G T STRIP1 Silent p.L225L 0.20 TCGA-98-8021-01 1 111495042 111495042 G C LRIF1 Nonsense_Mutation p.S155* 0.41 TCGA-98-8021-01 1 111986698 111986698 G A WDR77 Missense_Mutation p.S181F 0.08 tolerated(0.1) possibly_damaging(0.73) TCGA-98-8021-01 1 112998969 112998969 C T CTTNBP2NL Silent p.S285S 0.30 TCGA-98-8021-01 1 117086977 117086977 G C CD58 Missense_Mutation p.S107W 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-98-8021-01 1 117158864 117158864 G T IGSF3 Missense_Mutation p.R87S 0.11 deleterious(0.01) probably_damaging(1) TCGA-98-8021-01 1 119456803 119456803 C T TBX15 Splice_Site p.X182_splice 0.10 TCGA-98-8021-01 1 144813834 144813834 G A NBPF9 Missense_Mutation p.E102K 0.33 deleterious(0) probably_damaging(0.953) TCGA-98-8021-01 1 144814747 144814747 G A NBPF9 Missense_Mutation p.G128R 0.09 deleterious(0) probably_damaging(0.998) TCGA-98-8021-01 1 144816600 144816600 G C NBPF9 Missense_Mutation p.E244Q 0.15 deleterious(0.01) probably_damaging(0.979) TCGA-98-8021-01 1 147119336 147119336 G A ACP6 Silent p.L392L 0.08 TCGA-98-8021-01 1 147380512 147380512 G A GJA8 Missense_Mutation p.E144K 0.11 tolerated(0.19) benign(0.005) TCGA-98-8021-01 1 149762790 149762790 C T FCGR1A Intron 0.11 TCGA-98-8021-01 1 152083052 152083052 C G TCHH Missense_Mutation p.E881Q 0.21 unknown(0) TCGA-98-8021-01 1 152277388 152277388 G C FLG Missense_Mutation p.S3325C 0.18 unknown(0) TCGA-98-8021-01 1 152277679 152277679 G C FLG Missense_Mutation p.S3228C 0.19 unknown(0) TCGA-98-8021-01 1 152286344 152286344 C A FLG Missense_Mutation p.D340Y 0.21 possibly_damaging(0.874) TCGA-98-8021-01 1 153747800 153747800 C G SLC27A3 5'UTR 0.16 TCGA-98-8021-01 1 154061911 154061911 G T NUP210L Missense_Mutation p.H783N 0.28 deleterious(0.02) benign(0.258) TCGA-98-8021-01 1 155292417 155292417 G A RUSC1 Missense_Mutation p.D285N 0.08 deleterious_low_confidence(0.04) possibly_damaging(0.627) TCGA-98-8021-01 1 155630365 155630365 T C YY1AP1 Missense_Mutation p.M584V 0.27 tolerated_low_confidence(0.46) benign(0.003) TCGA-98-8021-01 1 155630472 155630472 G C YY1AP1 Nonsense_Mutation p.S548* 0.13 TCGA-98-8021-01 1 155638511 155638511 G A YY1AP1 Silent p.I400I 0.17 TCGA-98-8021-01 1 155984821 155984821 G C SSR2 Silent p.L98L 0.15 TCGA-98-8021-01 1 156146660 156146660 G C SEMA4A Missense_Mutation p.E720Q 0.08 tolerated(0.31) benign(0.013) TCGA-98-8021-01 1 157550108 157550108 C T FCRL4 Intron 0.26 TCGA-98-8021-01 1 158368889 158368889 C A OR10T2 Missense_Mutation p.R123L 0.25 deleterious(0.01) possibly_damaging(0.454) TCGA-98-8021-01 1 158450088 158450088 G A OR10R2 Missense_Mutation p.D141N 0.18 deleterious(0.01) probably_damaging(1) TCGA-98-8021-01 1 158621161 158621161 C T SPTA1 Missense_Mutation p.R1158Q 0.24 tolerated(0.68) benign(0.042) TCGA-98-8021-01 1 158724925 158724925 C G OR6K6 Missense_Mutation p.P107R 0.21 deleterious(0) probably_damaging(1) TCGA-98-8021-01 1 159176063 159176063 C A DARC Silent p.A280A 0.31 TCGA-98-8021-01 1 160129294 160129294 C G ATP1A4 Missense_Mutation p.F252L 0.07 deleterious(0.04) probably_damaging(0.997) TCGA-98-8021-01 1 16057115 16057115 C T PLEKHM2 Missense_Mutation p.S766L 0.17 tolerated(0.09) benign(0.003) TCGA-98-8021-01 1 161049724 161049724 C A PVRL4 Missense_Mutation p.G32V 0.27 deleterious(0.02) possibly_damaging(0.848) TCGA-98-8021-01 1 161090610 161090610 G A NIT1 3'UTR 0.10 TCGA-98-8021-01 1 161514494 161514494 G C FCGR3A Missense_Mutation p.Q228E 0.07 tolerated(0.45) benign(0.04) TCGA-98-8021-01 1 161595938 161595938 G C FCGR3B Missense_Mutation p.Q228E 0.07 tolerated(0.31) benign(0.002) TCGA-98-8021-01 1 161681816 161681816 C T FCRLA Silent p.L221L 0.21 TCGA-98-8021-01 1 162368830 162368830 C T SH2D1B Silent p.L82L 0.29 TCGA-98-8021-01 1 164776902 164776902 C T PBX1 Silent p.I275I 0.05 TCGA-98-8021-01 1 165652290 165652290 C G ALDH9A1 Missense_Mutation p.E129Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-98-8021-01 1 167096073 167096073 G A DUSP27 Missense_Mutation p.E569K 0.22 tolerated(0.07) benign(0.031) TCGA-98-8021-01 1 173916598 173916598 G C RC3H1 Missense_Mutation p.I882M 0.11 deleterious(0) probably_damaging(0.997) TCGA-98-8021-01 1 176563890 176563890 C T PAPPA2 Nonsense_Mutation p.Q384* 0.20 TCGA-98-8021-01 1 177225132 177225132 C T BRINP2 Missense_Mutation p.P116L 0.09 deleterious(0) probably_damaging(0.999) TCGA-98-8021-01 1 17740132 17740132 C T RCC2 Missense_Mutation p.E370K 0.06 deleterious(0) probably_damaging(0.998) TCGA-98-8021-01 1 17740135 17740135 C G RCC2 Missense_Mutation p.D369H 0.14 deleterious(0) probably_damaging(1) TCGA-98-8021-01 1 17913991 17913991 C G ARHGEF10L Missense_Mutation p.S25C 0.09 deleterious_low_confidence(0) possibly_damaging(0.471) TCGA-98-8021-01 1 179621312 179621312 G C TDRD5 Missense_Mutation p.E714Q 0.30 tolerated(0.12) benign(0.099) TCGA-98-8021-01 1 181690983 181690983 C T CACNA1E Silent p.Y682Y 0.17 TCGA-98-8021-01 1 182555084 182555084 C A RNASEL Missense_Mutation p.K286N 0.11 tolerated(0.51) benign(0.009) TCGA-98-8021-01 1 182908522 182908522 C T SHCBP1L Missense_Mutation p.D289N 0.16 deleterious(0) possibly_damaging(0.804) TCGA-98-8021-01 1 183091073 183091073 G C LAMC1 Missense_Mutation p.E736Q 0.20 tolerated(0.23) possibly_damaging(0.906) TCGA-98-8021-01 1 183511521 183511521 G C SMG7 Intron 0.12 TCGA-98-8021-01 1 183933130 183933130 C A COLGALT2 Missense_Mutation p.R286I 0.09 deleterious(0.05) benign(0.027) TCGA-98-8021-01 1 197111758 197111758 G A ASPM Missense_Mutation p.H542Y 0.11 tolerated(0.33) benign(0.127) TCGA-98-8021-01 1 200014653 200014653 G A NR5A2 Missense_Mutation p.R135K 0.08 deleterious(0) probably_damaging(0.998) TCGA-98-8021-01 1 200956212 200956212 C G KIF21B Missense_Mutation p.E1176Q 0.23 deleterious(0.04) possibly_damaging(0.86) TCGA-98-8021-01 1 201858584 201858584 G C SHISA4 Missense_Mutation p.E29Q 0.09 deleterious(0.03) probably_damaging(0.952) TCGA-98-8021-01 1 202245542 202245542 C G LGR6 Silent p.V179V 0.09 TCGA-98-8021-01 1 202245590 202245590 C G LGR6 Silent p.L195L 0.12 TCGA-98-8021-01 1 20249204 20249204 C T PLA2G2E Missense_Mutation p.E29K 0.11 tolerated(0.75) benign(0.065) TCGA-98-8021-01 1 202887496 202887496 C G KLHL12 Missense_Mutation p.E124Q 0.09 deleterious(0.01) benign(0.268) TCGA-98-8021-01 1 203316833 203316833 G A FMOD Missense_Mutation p.S189L 0.11 deleterious(0.02) benign(0.211) TCGA-98-8021-01 1 205042240 205042240 C T CNTN2 Silent p.L963L 0.25 TCGA-98-8021-01 1 206972344 206972344 T C IL19 Silent p.V35V 0.09 TCGA-98-8021-01 1 207139155 207139155 C T FCAMR Nonsense_Mutation p.W73* 0.20 TCGA-98-8021-01 1 207196130 207196130 C T C1orf116 Missense_Mutation p.E327K 0.21 tolerated(0.07) probably_damaging(0.988) TCGA-98-8021-01 1 207753863 207753863 C T CR1 Silent p.S1707S 0.07 TCGA-98-8021-01 1 209800884 209800884 C A LAMB3 Silent p.P443P 0.23 TCGA-98-8021-01 1 211462676 211462676 C G RCOR3 Missense_Mutation p.P293A 0.08 tolerated(0.35) benign(0.013) TCGA-98-8021-01 1 212125955 212125955 C T INTS7 Missense_Mutation p.E758K 0.07 tolerated(0.69) benign(0.155) TCGA-98-8021-01 1 21800014 21800014 C T NBPF3 Silent p.V292V 0.10 TCGA-98-8021-01 1 223178195 223178195 T C DISP1 Silent p.S1152S 0.10 TCGA-98-8021-01 1 227069595 227069595 C T PSEN2 5'UTR 0.10 TCGA-98-8021-01 1 227083205 227083205 C T PSEN2 Silent p.L424L 0.18 TCGA-98-8021-01 1 227239638 227239638 G A CDC42BPA Intron 0.09 TCGA-98-8021-01 1 228466944 228466944 G C OBSCN Missense_Mutation p.E2828Q 0.14 probably_damaging(0.987) TCGA-98-8021-01 1 230923289 230923289 G A CAPN9 Missense_Mutation p.D514N 0.28 tolerated(0.25) benign(0.001) TCGA-98-8021-01 1 231060592 231060592 C G TTC13 Missense_Mutation p.W572C 0.28 deleterious(0) probably_damaging(0.999) TCGA-98-8021-01 1 23399805 23399805 G C KDM1A Missense_Mutation p.R548T 0.19 deleterious(0.02) probably_damaging(0.948) TCGA-98-8021-01 1 235973212 235973212 C G LYST Silent p.L302L 0.12 TCGA-98-8021-01 1 236208959 236208959 C G NID1 Missense_Mutation p.A184P 0.25 deleterious(0) probably_damaging(0.996) TCGA-98-8021-01 1 236920836 236920836 C T ACTN2 Silent p.I735I 0.16 TCGA-98-8021-01 1 238053399 238053399 C A ZP4 Missense_Mutation p.V85L 0.19 tolerated(0.97) benign(0.006) TCGA-98-8021-01 1 241262044 241262044 G T RGS7 Silent p.R33R 0.19 TCGA-98-8021-01 1 241757691 241757691 C A OPN3 3'UTR 0.25 TCGA-98-8021-01 1 241757923 241757923 G C OPN3 Missense_Mutation p.P339R 0.22 deleterious(0) possibly_damaging(0.572) TCGA-98-8021-01 1 2421204 2421204 G A PLCH2 Silent p.K444K 0.13 TCGA-98-8021-01 1 243388524 243388524 C A CEP170 Missense_Mutation p.R20L 0.60 deleterious(0) benign(0.398) TCGA-98-8021-01 1 247050641 247050641 C G AHCTF1 Missense_Mutation p.D791H 0.06 deleterious(0) probably_damaging(1) TCGA-98-8021-01 1 247063460 247063460 C T AHCTF1 Missense_Mutation p.D456N 0.14 deleterious(0.03) probably_damaging(0.924) TCGA-98-8021-01 1 247201562 247201562 C A ZNF670 Missense_Mutation p.R120M 0.31 tolerated(0.15) possibly_damaging(0.577) TCGA-98-8021-01 1 247587572 247587572 T C NLRP3 Missense_Mutation p.I276T 0.23 deleterious(0) possibly_damaging(0.845) TCGA-98-8021-01 1 247836016 247836016 C A OR13G1 Missense_Mutation p.V110F 0.34 deleterious(0.02) possibly_damaging(0.578) TCGA-98-8021-01 1 247921004 247921004 C G OR1C1 Missense_Mutation p.Q235H 0.26 tolerated(0.35) benign(0.008) TCGA-98-8021-01 1 248201729 248201729 C A OR2L2 Missense_Mutation p.L54I 0.21 deleterious(0.01) possibly_damaging(0.555) TCGA-98-8021-01 1 248309184 248309184 C G OR2M5 Silent p.L245L 0.22 TCGA-98-8021-01 1 248569400 248569400 T C OR2T1 Silent p.Y35Y 0.19 TCGA-98-8021-01 1 26663384 26663384 C A AIM1L Nonsense_Mutation p.E413* 0.37 TCGA-98-8021-01 1 27189725 27189725 C T SFN Nonsense_Mutation p.Q8* 0.25 TCGA-98-8021-01 1 27683584 27683584 G A MAP3K6 Missense_Mutation p.R1094C 0.23 deleterious(0) possibly_damaging(0.891) TCGA-98-8021-01 1 29606069 29606069 C T PTPRU Silent p.S555S 0.15 TCGA-98-8021-01 1 31210516 31210516 G A LAPTM5 Missense_Mutation p.H181Y 0.06 tolerated(0.93) benign(0.009) TCGA-98-8021-01 1 31734388 31734388 C T SNRNP40 Missense_Mutation p.D338N 0.11 tolerated(0.59) benign(0.079) TCGA-98-8021-01 1 34192152 34192152 C T CSMD2 Missense_Mutation p.D795N 0.09 deleterious(0.03) possibly_damaging(0.846) TCGA-98-8021-01 1 35496189 35496189 C T ZMYM6 Missense_Mutation p.E18K 0.05 tolerated(0.44) benign(0.001) TCGA-98-8021-01 1 36053989 36053989 G A TFAP2E Silent p.L207L 0.23 TCGA-98-8021-01 1 37356632 37356632 G A GRIK3 Nonsense_Mutation p.R61* 0.07 TCGA-98-8021-01 1 40218603 40218603 C G PPIE Missense_Mutation p.S239C 0.07 tolerated(0.09) probably_damaging(0.999) TCGA-98-8021-01 1 40432287 40432287 G C MFSD2A Silent p.L256L 0.03 TCGA-98-8021-01 1 43851816 43851816 G C MED8 Missense_Mutation p.S192C 0.18 deleterious(0.01) probably_damaging(0.991) TCGA-98-8021-01 1 43896318 43896318 C T SZT2 Silent p.F1487F 0.06 TCGA-98-8021-01 1 44160542 44160542 C T KDM4A Missense_Mutation p.R883W 0.14 deleterious(0) probably_damaging(0.993) TCGA-98-8021-01 1 45120414 45120414 C T TMEM53 Silent p.S217S 0.08 TCGA-98-8021-01 1 47024405 47024405 G C MKNK1 Missense_Mutation p.Q414E 0.09 tolerated(0.11) benign(0.04) TCGA-98-8021-01 1 47154054 47154054 C G EFCAB14 Missense_Mutation p.E320Q 0.06 tolerated(0.11) possibly_damaging(0.628) TCGA-98-8021-01 1 52253469 52253469 G A OSBPL9 3'UTR 0.07 TCGA-98-8021-01 1 52499384 52499384 C G KTI12 Missense_Mutation p.R17P 0.41 deleterious(0) probably_damaging(0.997) TCGA-98-8021-01 1 54238104 54238104 C A NDC1 Missense_Mutation p.G620V 0.15 tolerated(0.27) possibly_damaging(0.904) TCGA-98-8021-01 1 55070841 55070841 C G ACOT11 Silent p.L443L 0.10 TCGA-98-8021-01 1 55118636 55118636 G A MROH7 Missense_Mutation p.E13K 0.26 tolerated_low_confidence(0.13) probably_damaging(0.998) TCGA-98-8021-01 1 55118740 55118740 G A MROH7 Silent p.L47L 0.12 TCGA-98-8021-01 1 55118786 55118786 G A MROH7 Missense_Mutation p.D63N 0.13 deleterious_low_confidence(0.01) benign(0.015) TCGA-98-8021-01 1 55118794 55118794 G C MROH7 Missense_Mutation p.L65F 0.13 deleterious_low_confidence(0.01) probably_damaging(0.961) TCGA-98-8021-01 1 55118914 55118914 G A MROH7 Silent p.L105L 0.18 TCGA-98-8021-01 1 55119152 55119152 G A MROH7 Missense_Mutation p.E185K 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.714) TCGA-98-8021-01 1 55119683 55119683 G A MROH7 Missense_Mutation p.D362N 0.09 tolerated_low_confidence(0.16) benign(0.223) TCGA-98-8021-01 1 63944456 63944456 G A ITGB3BP Missense_Mutation p.S117F 0.23 deleterious(0.03) probably_damaging(0.918) TCGA-98-8021-01 1 64672505 64672505 T A UBE2U Silent p.V69V 0.16 TCGA-98-8021-01 1 65243444 65243444 C G RAVER2 Missense_Mutation p.S152C 0.11 deleterious(0.03) probably_damaging(0.938) TCGA-98-8021-01 1 6528529 6528529 G A PLEKHG5 Silent p.L868L 0.27 TCGA-98-8021-01 1 66036176 66036176 G T LEPR Missense_Mutation p.A21S 0.33 deleterious(0.04) possibly_damaging(0.468) TCGA-98-8021-01 1 67155946 67155946 C A SGIP1 Missense_Mutation p.T506N 0.23 deleterious(0.03) probably_damaging(0.95) TCGA-98-8021-01 1 67423838 67423838 G A MIER1 Missense_Mutation p.E146K 0.08 tolerated(0.06) possibly_damaging(0.901) TCGA-98-8021-01 1 67436520 67436520 G A MIER1 Missense_Mutation p.D268N 0.17 tolerated(0.43) benign(0.014) TCGA-98-8021-01 1 67436549 67436549 G A MIER1 Silent p.V277V 0.09 TCGA-98-8021-01 1 67436589 67436589 G C MIER1 Missense_Mutation p.E291Q 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-98-8021-01 1 67436617 67436617 G A MIER1 Missense_Mutation p.G300E 0.09 deleterious(0.01) probably_damaging(1) TCGA-98-8021-01 1 67437396 67437396 G T MIER1 Missense_Mutation p.R328I 0.13 deleterious(0.01) possibly_damaging(0.864) TCGA-98-8021-01 1 67450511 67450511 A G MIER1 Silent p.P542P 0.13 TCGA-98-8021-01 1 67558910 67558910 T C C1orf141 Silent p.Q327Q 0.32 TCGA-98-8021-01 1 70716393 70716393 G A SRSF11 Missense_Mutation p.E454K 0.21 deleterious_low_confidence(0.02) probably_damaging(0.914) TCGA-98-8021-01 1 74667011 74667011 G T FPGT-TNNI3K Missense_Mutation p.G100V 0.10 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-98-8021-01 1 75055693 75055693 C A C1orf173 Missense_Mutation p.V600L 0.36 tolerated(0.59) benign(0.004) TCGA-98-8021-01 1 75229756 75229756 G T TYW3 Missense_Mutation p.D247Y 0.15 tolerated(0.11) benign(0.01) TCGA-98-8021-01 1 78601368 78601368 G A GIPC2 Missense_Mutation p.D297N 0.17 deleterious(0) probably_damaging(0.945) TCGA-98-8021-01 1 84386809 84386809 G C TTLL7 Nonsense_Mutation p.S442* 0.09 TCGA-98-8021-01 1 85656043 85656043 C T SYDE2 Missense_Mutation p.D380N 0.17 tolerated(0.05) benign(0.02) TCGA-98-8021-01 1 86850411 86850411 T C ODF2L Missense_Mutation p.K107R 0.39 tolerated(0.16) benign(0.081) TCGA-98-8021-01 1 8716411 8716411 G C RERE 5'UTR 0.08 TCGA-98-8021-01 1 905962 905962 C G PLEKHN1 Missense_Mutation p.S131W 0.11 deleterious(0) probably_damaging(0.977) TCGA-98-8021-01 1 91845721 91845721 C A HFM1 Missense_Mutation p.A316S 0.22 deleterious(0.04) probably_damaging(0.999) TCGA-98-8021-01 1 92763053 92763053 C T GLMN Missense_Mutation p.D25N 0.04 deleterious(0.01) probably_damaging(1) TCGA-98-8021-01 1 94640114 94640114 C G ARHGAP29 Missense_Mutation p.E1033Q 0.18 deleterious(0) probably_damaging(0.997) TCGA-98-8021-01 1 94939328 94939328 C G ABCD3 Missense_Mutation p.I114M 0.26 deleterious(0) probably_damaging(0.999) TCGA-98-8021-01 1 94955358 94955358 C T ABCD3 Missense_Mutation p.S412L 0.21 deleterious(0.03) benign(0.01) TCGA-98-8021-01 1 95614312 95614312 C G TMEM56 Missense_Mutation p.F70L 0.08 tolerated(1) benign(0.006) TCGA-98-8021-01 1 98060702 98060702 C G DPYD Missense_Mutation p.D291H 0.27 tolerated(0.55) benign(0.005) TCGA-98-8021-01 20 15480436 15480436 G T MACROD2 Missense_Mutation p.A197S 0.35 deleterious(0) probably_damaging(0.999) TCGA-98-8021-01 20 18296961 18296961 C T ZNF133 Missense_Mutation p.S488L 0.10 deleterious(0.03) probably_damaging(0.982) TCGA-98-8021-01 20 20007500 20007500 C T NAA20 Missense_Mutation p.P81L 0.07 deleterious(0.01) possibly_damaging(0.512) TCGA-98-8021-01 20 20016938 20016938 G C CRNKL1 Silent p.L816L 0.08 TCGA-98-8021-01 20 25450629 25450629 C T NINL Silent p.Q1117Q 0.10 TCGA-98-8021-01 20 30530823 30530823 G A TTLL9 Silent p.%3D 0.13 TCGA-98-8021-01 20 30585113 30585113 G T XKR7 Missense_Mutation p.K531N 0.25 deleterious(0.01) probably_damaging(0.909) TCGA-98-8021-01 20 3212098 3212098 C G SLC4A11 Missense_Mutation p.E319Q 0.06 tolerated(0.09) possibly_damaging(0.499) TCGA-98-8021-01 20 33345394 33345394 G C NCOA6 Missense_Mutation p.A386G 0.17 benign(0.156) TCGA-98-8021-01 20 33623028 33623028 T A TRPC4AP Missense_Mutation p.S317C 0.29 deleterious(0.02) benign(0.401) TCGA-98-8021-01 20 34297149 34297149 C T RBM39 Missense_Mutation p.E408K 0.12 tolerated(0.7) benign(0.022) TCGA-98-8021-01 20 37202826 37202826 C G RALGAPB Missense_Mutation p.I1392M 0.11 deleterious(0) possibly_damaging(0.746) TCGA-98-8021-01 20 37524261 37524261 C T PPP1R16B Silent p.A125A 0.27 TCGA-98-8021-01 20 40086017 40086017 G A CHD6 Missense_Mutation p.R906C 0.20 deleterious(0) probably_damaging(1) TCGA-98-8021-01 20 41400173 41400173 G C PTPRT Missense_Mutation p.L196V 0.18 tolerated(0.07) possibly_damaging(0.465) TCGA-98-8021-01 20 43385623 43385623 C T RIMS4 Silent p.K170K 0.14 TCGA-98-8021-01 20 43850827 43850827 G C SEMG2 Missense_Mutation p.R185T 0.10 deleterious(0.02) probably_damaging(0.993) TCGA-98-8021-01 20 43955844 43955844 C T SDC4 3'UTR 0.33 TCGA-98-8021-01 20 47887119 47887119 G C ZNFX1 Missense_Mutation p.I410M 0.17 deleterious(0) probably_damaging(0.943) TCGA-98-8021-01 20 47887520 47887520 G C ZNFX1 Missense_Mutation p.L277V 0.27 tolerated(0.29) benign(0.028) TCGA-98-8021-01 20 49575889 49575889 C T MOCS3 Silent p.V170V 0.04 TCGA-98-8021-01 20 49620546 49620546 T C KCNG1 3'UTR 0.28 TCGA-98-8021-01 20 5556165 5556165 G T GPCPD1 Missense_Mutation p.P299T 0.50 tolerated(0.52) benign(0) TCGA-98-8021-01 20 57273826 57273826 C T NPEPL1 Silent p.L198L 0.15 TCGA-98-8021-01 20 57768362 57768362 C T ZNF831 Missense_Mutation p.P763L 0.29 tolerated(0.1) benign(0.045) TCGA-98-8021-01 20 57771062 57771062 T C ZNF831 Splice_Site p.X1292_splice 0.09 TCGA-98-8021-01 20 58571625 58571625 C G CDH26 Intron 0.07 TCGA-98-8021-01 20 5965426 5965426 G A MCM8 Splice_Site p.X578_splice 0.09 TCGA-98-8021-01 20 60551245 60551245 G A TAF4 Silent p.L1079L 0.10 TCGA-98-8021-01 20 60774277 60774277 G - MTG2 Frame_Shift_Del p.I265Sfs*10 0.42 TCGA-98-8021-01 20 60904913 60904913 C G LAMA5 Missense_Mutation p.E1347Q 0.07 probably_damaging(0.991) TCGA-98-8021-01 20 61576196 61576196 G C GID8 Missense_Mutation p.D207H 0.23 deleterious(0.01) possibly_damaging(0.68) TCGA-98-8021-01 20 61870759 61870759 C T BIRC7 Silent p.P233P 0.14 TCGA-98-8021-01 20 61939385 61939385 G A COL20A1 Missense_Mutation p.E240K 0.19 deleterious(0.01) possibly_damaging(0.811) TCGA-98-8021-01 20 62038696 62038696 C G KCNQ2 Silent p.L640L 0.15 TCGA-98-8021-01 20 62078138 62078138 C T KCNQ2 Missense_Mutation p.E117K 0.19 deleterious(0) possibly_damaging(0.818) TCGA-98-8021-01 20 62127263 62127263 G A EEF1A2 Silent p.I90I 0.17 TCGA-98-8021-01 20 62891600 62891600 C G PCMTD2 Silent p.L94L 0.17 TCGA-98-8021-01 20 8713961 8713961 G A PLCB1 Missense_Mutation p.M655I 0.07 deleterious(0) probably_damaging(0.998) TCGA-98-8021-01 21 30547135 30547135 G A MAP3K7CL Silent p.L217L 0.09 TCGA-98-8021-01 21 31045429 31045429 G C GRIK1 Missense_Mutation p.I200M 0.22 tolerated(0.21) possibly_damaging(0.715) TCGA-98-8021-01 21 31852612 31852612 C G KRTAP19-1 Missense_Mutation p.G9R 0.33 tolerated_low_confidence(0.8) unknown(0) TCGA-98-8021-01 21 32127587 32127587 C A KRTAP21-1 Missense_Mutation p.G37V 0.48 tolerated_low_confidence(0.42) unknown(0) TCGA-98-8021-01 21 32127588 32127588 C A KRTAP21-1 Missense_Mutation p.G37W 0.47 tolerated_low_confidence(0.15) unknown(0) TCGA-98-8021-01 21 34117904 34117904 C T PAXBP1 Silent p.V683V 0.09 TCGA-98-8021-01 21 36088774 36088774 G A CLIC6 Missense_Mutation p.M685I 0.09 deleterious(0.02) benign(0.413) TCGA-98-8021-01 21 37618757 37618757 C T DOPEY2 Silent p.L1493L 0.16 TCGA-98-8021-01 21 38117152 38117152 C T SIM2 Silent p.L431L 0.20 TCGA-98-8021-01 21 41032885 41032885 G A B3GALT5 Silent p.L133L 0.25 TCGA-98-8021-01 21 42762564 42762564 G C MX2 Missense_Mutation p.D269H 0.17 deleterious(0) probably_damaging(1) TCGA-98-8021-01 21 45012170 45012170 C G HSF2BP Missense_Mutation p.L244F 0.12 tolerated(0.11) probably_damaging(0.986) TCGA-98-8021-01 21 45104459 45104459 G A RRP1B Missense_Mutation p.R306Q 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-98-8021-01 21 45810884 45810884 C G TRPM2 Missense_Mutation p.I472M 0.22 deleterious(0) probably_damaging(0.928) TCGA-98-8021-01 21 46032534 46032534 C A KRTAP10-8 Missense_Mutation p.P173T 0.38 deleterious(0) unknown(0) TCGA-98-8021-01 22 16267081 16267081 C T POTEH Missense_Mutation p.M456I 0.07 tolerated_low_confidence(0.13) benign(0.003) TCGA-98-8021-01 22 20784812 20784812 C A SCARF2 Missense_Mutation p.G369V 0.25 deleterious(0) probably_damaging(1) TCGA-98-8021-01 22 21347955 21347955 C T LZTR1 Missense_Mutation p.S422F 0.24 deleterious(0) probably_damaging(0.989) TCGA-98-8021-01 22 22735434 22735434 C G IGLV1-44 Missense_Mutation p.T24S 0.33 deleterious_low_confidence(0) possibly_damaging(0.846) TCGA-98-8021-01 22 24480595 24480595 G C CABIN1 Missense_Mutation p.E992Q 0.07 deleterious(0) probably_damaging(0.993) TCGA-98-8021-01 22 25243714 25243714 G T SGSM1 Nonsense_Mutation p.E85* 0.11 TCGA-98-8021-01 22 25280109 25280109 G A SGSM1 Missense_Mutation p.D584N 0.19 tolerated(0.1) benign(0.008) TCGA-98-8021-01 22 26736448 26736448 G C SEZ6L Missense_Mutation p.E688Q 0.09 deleterious(0.04) possibly_damaging(0.752) TCGA-98-8021-01 22 29835036 29835036 C G RFPL1 Missense_Mutation p.Q86E 0.18 tolerated(0.21) benign(0.303) TCGA-98-8021-01 22 30228285 30228285 C G ASCC2 Missense_Mutation p.Q10H 0.23 tolerated(0.11) benign(0.214) TCGA-98-8021-01 22 31003375 31003375 G C TCN2 Missense_Mutation p.E19D 0.12 tolerated(0.47) benign(0.012) TCGA-98-8021-01 22 31522933 31522933 C T INPP5J Silent p.V139V 0.26 TCGA-98-8021-01 22 31859047 31859047 C G EIF4ENIF1 Missense_Mutation p.E220Q 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-98-8021-01 22 31859071 31859071 C T EIF4ENIF1 Missense_Mutation p.D212N 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-98-8021-01 22 32439307 32439307 C T SLC5A1 Silent p.V13V 0.13 TCGA-98-8021-01 22 32794028 32794028 G A RTCB Silent p.F238F 0.08 TCGA-98-8021-01 22 36700085 36700085 G A MYH9 Silent p.V782V 0.18 TCGA-98-8021-01 22 38121649 38121649 C A TRIOBP Missense_Mutation p.P1029H 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-98-8021-01 22 38355384 38355384 C G POLR2F Missense_Mutation p.S41C 0.09 deleterious(0.05) benign(0.266) TCGA-98-8021-01 22 39427960 39427960 A G APOBEC3D Missense_Mutation p.K342E 0.22 tolerated(0.38) benign(0.002) TCGA-98-8021-01 22 39448631 39448631 C G APOBEC3F Missense_Mutation p.F351L 0.14 deleterious(0) probably_damaging(0.997) TCGA-98-8021-01 22 39482497 39482497 G A APOBEC3G Missense_Mutation p.D317N 0.14 tolerated(0.26) probably_damaging(0.912) TCGA-98-8021-01 22 41569698 41569698 G A EP300 Silent p.L1563L 0.08 TCGA-98-8021-01 22 42336140 42336140 G C CENPM Intron 0.18 TCGA-98-8021-01 22 42377804 42377804 A G SEPT3 Missense_Mutation p.M56V 0.29 tolerated(0.19) possibly_damaging(0.761) TCGA-98-8021-01 22 42606472 42606472 G A TCF20 Silent p.L1614L 0.13 TCGA-98-8021-01 22 43036110 43036110 G C ATP5L2 Silent p.V57V 0.09 TCGA-98-8021-01 22 43206859 43206859 C G ARFGAP3 Missense_Mutation p.D386H 0.16 deleterious(0) possibly_damaging(0.808) TCGA-98-8021-01 22 44131828 44131828 C A EFCAB6 Missense_Mutation p.D185Y 0.10 deleterious(0) probably_damaging(1) TCGA-98-8021-01 22 45601781 45601781 C G KIAA0930 Missense_Mutation p.E82Q 0.15 tolerated(0.51) benign(0.002) TCGA-98-8021-01 22 45946445 45946445 C T FBLN1 Silent p.F549F 0.13 TCGA-98-8021-01 22 45960828 45960828 C T FBLN1 Intron 0.15 TCGA-98-8021-01 22 46773140 46773140 G C CELSR1 Missense_Mutation p.L2468V 0.07 tolerated(0.12) benign(0.246) TCGA-98-8021-01 22 50655769 50655769 G A SELO Missense_Mutation p.A661T 0.09 tolerated(0.34) benign(0.027) TCGA-98-8021-01 22 50694270 50694270 G C MAPK12 Missense_Mutation p.I220M 0.14 deleterious(0.01) probably_damaging(0.911) TCGA-98-8021-01 22 50894732 50894732 C T SBF1 Silent p.L1393L 0.14 TCGA-98-8021-01 22 51014485 51014485 C G CPT1B Silent p.V252V 0.05 TCGA-98-8021-01 22 51040296 51040296 C A MAPK8IP2 Silent p.L48L 0.15 TCGA-98-8021-01 2 101609818 101609818 G C NPAS2 Missense_Mutation p.Q707H 0.10 tolerated(0.09) possibly_damaging(0.789) TCGA-98-8021-01 2 103068603 103068603 G A IL18RAP Missense_Mutation p.E588K 0.07 tolerated(0.23) benign(0.003) TCGA-98-8021-01 2 107460049 107460049 C T ST6GAL2 Missense_Mutation p.D129N 0.16 benign(0.157) TCGA-98-8021-01 2 109092286 109092286 C G GCC2 Missense_Mutation p.Q1014E 0.09 deleterious(0.01) probably_damaging(0.952) TCGA-98-8021-01 2 109381182 109381182 C T RANBP2 Missense_Mutation p.T1396I 0.27 tolerated(0.14) benign(0.085) TCGA-98-8021-01 2 109492709 109492709 G A CCDC138 Silent p.%3D 0.13 TCGA-98-8021-01 2 11341115 11341115 C T ROCK2 Missense_Mutation p.E960K 0.13 deleterious(0.03) benign(0.186) TCGA-98-8021-01 2 114501317 114501317 C G SLC35F5 Missense_Mutation p.E179Q 0.07 tolerated(0.41) benign(0.078) TCGA-98-8021-01 2 136567187 136567187 G T LCT Silent p.G910G 0.28 TCGA-98-8021-01 2 141986891 141986891 A G LRP1B Silent p.T237T 0.16 TCGA-98-8021-01 2 152404198 152404198 C A NEB Missense_Mutation p.D6738Y 0.29 probably_damaging(1) TCGA-98-8021-01 2 155252543 155252543 A T GALNT13 Missense_Mutation p.K399N 0.23 tolerated(0.14) benign(0.379) TCGA-98-8021-01 2 159954323 159954323 C G TANC1 Nonsense_Mutation p.S79* 0.09 TCGA-98-8021-01 2 163208848 163208848 G C GCA Missense_Mutation p.D65H 0.22 deleterious(0) probably_damaging(0.989) TCGA-98-8021-01 2 165970482 165970482 T A SCN3A Splice_Site p.X1172_splice 0.26 TCGA-98-8021-01 2 166153534 166153534 T C SCN2A Missense_Mutation p.I92T 0.20 deleterious(0) benign(0.197) TCGA-98-8021-01 2 166892896 166892896 A T SCN1A Missense_Mutation p.Y1031N 0.32 tolerated(0.3) benign(0.243) TCGA-98-8021-01 2 170134292 170134292 C G LRP2 Missense_Mutation p.D579H 0.11 probably_damaging(0.994) TCGA-98-8021-01 2 173341220 173341220 C T ITGA6 Missense_Mutation p.S456L 0.16 deleterious(0) probably_damaging(0.995) TCGA-98-8021-01 2 175618254 175618254 A T CHRNA1 Missense_Mutation p.V277E 0.29 deleterious(0) probably_damaging(1) TCGA-98-8021-01 2 179430708 179430708 G A TTN Silent p.N26717N 0.32 TCGA-98-8021-01 2 179434508 179434508 C T TTN Missense_Mutation p.E25451K 0.20 TCGA-98-8021-01 2 179435709 179435709 C T TTN Silent p.E25050E 0.21 TCGA-98-8021-01 2 179436473 179436473 C T TTN Missense_Mutation p.E24796K 0.06 TCGA-98-8021-01 2 179436897 179436897 C G TTN Missense_Mutation p.E24654D 0.09 TCGA-98-8021-01 2 179449651 179449651 C T TTN Missense_Mutation p.D21573N 0.21 TCGA-98-8021-01 2 179472511 179472511 C A TTN Splice_Site p.X17668_splice 0.39 TCGA-98-8021-01 2 179472512 179472512 C A TTN Nonsense_Mutation p.E17668* 0.38 TCGA-98-8021-01 2 179584943 179584943 C A TTN Missense_Mutation p.G7809V 0.32 TCGA-98-8021-01 2 179598363 179598363 A T TTN Silent p.S5251S 0.34 TCGA-98-8021-01 2 179600436 179600436 C T TTN Missense_Mutation p.E4913K 0.16 TCGA-98-8021-01 2 181925479 181925479 G T UBE2E3 Missense_Mutation p.A156S 0.16 deleterious(0) probably_damaging(0.999) TCGA-98-8021-01 2 183822237 183822237 T G NCKAP1 Silent p.R663R 0.28 TCGA-98-8021-01 2 183847611 183847611 G T NCKAP1 Silent p.I388I 0.13 TCGA-98-8021-01 2 189949923 189949923 C G COL5A2 Missense_Mutation p.R254P 0.17 probably_damaging(0.997) TCGA-98-8021-01 2 196599634 196599634 G A SLC39A10 Missense_Mutation p.D789N 0.13 deleterious(0.02) probably_damaging(0.975) TCGA-98-8021-01 2 196681653 196681653 C A DNAH7 Missense_Mutation p.V3154F 0.50 deleterious(0) probably_damaging(0.977) TCGA-98-8021-01 2 196723364 196723364 G A DNAH7 Missense_Mutation p.S2634F 0.25 deleterious(0) probably_damaging(0.995) TCGA-98-8021-01 2 198263264 198263264 T C SF3B1 Missense_Mutation p.R1019G 0.05 deleterious(0) probably_damaging(0.96) TCGA-98-8021-01 2 200824594 200824594 G A C2orf47 Missense_Mutation p.D214N 0.29 deleterious(0.02) probably_damaging(1) TCGA-98-8021-01 2 204073361 204073361 G A NBEAL1 Missense_Mutation p.G2474E 0.10 deleterious(0) probably_damaging(1) TCGA-98-8021-01 2 207631938 207631938 C G FASTKD2 Nonsense_Mutation p.S174* 0.13 TCGA-98-8021-01 2 207636004 207636004 G T FASTKD2 Missense_Mutation p.R327M 0.32 deleterious(0) possibly_damaging(0.885) TCGA-98-8021-01 2 208841588 208841588 G C PLEKHM3 Missense_Mutation p.Q445E 0.30 tolerated(0.25) benign(0.009) TCGA-98-8021-01 2 210517998 210517998 G A MAP2 Missense_Mutation p.G35D 0.23 deleterious_low_confidence(0.03) benign(0.03) TCGA-98-8021-01 2 215013885 215013885 G A SPAG16 Missense_Mutation p.D539N 0.35 deleterious(0.01) probably_damaging(1) TCGA-98-8021-01 2 215866354 215866354 G C ABCA12 Missense_Mutation p.Q931E 0.13 deleterious(0.02) possibly_damaging(0.777) TCGA-98-8021-01 2 215917225 215917225 G C ABCA12 Missense_Mutation p.L165V 0.15 tolerated(0.08) possibly_damaging(0.622) TCGA-98-8021-01 2 220034704 220034704 C T SLC23A3 Translation_Start_Site p.M1? 0.31 deleterious_low_confidence(0) possibly_damaging(0.718) TCGA-98-8021-01 2 220246147 220246147 G A DNPEP Silent p.I383I 0.11 TCGA-98-8021-01 2 220329250 220329250 G A SPEG Missense_Mutation p.R934H 0.09 possibly_damaging(0.558) TCGA-98-8021-01 2 220354197 220354197 C G SPEG Silent p.V2819V 0.10 TCGA-98-8021-01 2 223423450 223423450 C G SGPP2 Missense_Mutation p.L345V 0.11 tolerated(0.37) benign(0.085) TCGA-98-8021-01 2 225684224 225684224 C A DOCK10 Missense_Mutation p.R1069L 0.14 deleterious(0) probably_damaging(0.998) TCGA-98-8021-01 2 231037627 231037627 G C SP110 Missense_Mutation p.L547V 0.06 tolerated(0.06) possibly_damaging(0.567) TCGA-98-8021-01 2 231682474 231682474 C T CAB39 Silent p.L233L 0.21 TCGA-98-8021-01 2 233655467 233655467 G C GIGYF2 Missense_Mutation p.D280H 0.09 probably_damaging(0.99) TCGA-98-8021-01 2 241492405 241492405 T C ANKMY1 Missense_Mutation p.S47G 0.34 deleterious(0.01) possibly_damaging(0.508) TCGA-98-8021-01 2 241496716 241496716 C T ANKMY1 5'UTR 0.25 TCGA-98-8021-01 2 24261794 24261794 G C C2orf44 Missense_Mutation p.L191V 0.10 deleterious(0) probably_damaging(1) TCGA-98-8021-01 2 24484457 24484457 G A ITSN2 Missense_Mutation p.S837F 0.19 tolerated(0.06) unknown(0) TCGA-98-8021-01 2 24507685 24507685 G A ITSN2 Nonsense_Mutation p.Q631* 0.06 TCGA-98-8021-01 2 25966959 25966959 C T ASXL2 Silent p.E749E 0.17 TCGA-98-8021-01 2 27280206 27280206 C T AGBL5 Missense_Mutation p.S524L 0.08 tolerated(0.72) benign(0.205) TCGA-98-8021-01 2 27799629 27799629 G A C2orf16 Missense_Mutation p.E64K 0.08 tolerated(0.13) benign(0.331) TCGA-98-8021-01 2 27800314 27800314 G T C2orf16 Missense_Mutation p.G292V 0.06 tolerated(0.15) possibly_damaging(0.719) TCGA-98-8021-01 2 27805092 27805092 C T C2orf16 Missense_Mutation p.H1885Y 0.11 tolerated(0.09) unknown(0) TCGA-98-8021-01 2 29293910 29293910 G T C2orf71 Missense_Mutation p.P1073H 0.35 deleterious(0) probably_damaging(0.961) TCGA-98-8021-01 2 29296953 29296953 C T C2orf71 Missense_Mutation p.E59K 0.26 tolerated(0.19) benign(0.184) TCGA-98-8021-01 2 30756079 30756079 G A LCLAT1 Missense_Mutation p.R126K 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-98-8021-01 2 31805945 31805945 G C SRD5A2 RNA 0.25 TCGA-98-8021-01 2 32254715 32254715 G C DPY30 Missense_Mutation p.Q59E 0.09 deleterious(0.03) benign(0.406) TCGA-98-8021-01 2 32853352 32853352 C T TTC27 5'UTR 0.18 TCGA-98-8021-01 2 39085813 39085813 C G DHX57 Missense_Mutation p.R526P 0.15 tolerated(0.11) benign(0.33) TCGA-98-8021-01 2 43783650 43783650 G A THADA Silent p.L836L 0.07 TCGA-98-8021-01 2 44531429 44531429 C G SLC3A1 Missense_Mutation p.I428M 0.10 deleterious(0) probably_damaging(0.961) TCGA-98-8021-01 2 46378345 46378345 G T PRKCE Nonsense_Mutation p.E633* 0.11 TCGA-98-8021-01 2 47602386 47602386 G C EPCAM Missense_Mutation p.E147Q 0.07 tolerated(0.06) possibly_damaging(0.848) TCGA-98-8021-01 2 55253485 55253485 C T RTN4 Missense_Mutation p.E584K 0.20 deleterious(0) probably_damaging(0.99) TCGA-98-8021-01 2 55436833 55436833 C T CLHC1 Missense_Mutation p.E212K 0.26 tolerated(0.08) benign(0.018) TCGA-98-8021-01 2 55459986 55459986 C T RPS27A Missense_Mutation p.T9M 0.18 tolerated(0.15) benign(0.005) TCGA-98-8021-01 2 55756127 55756127 T C CCDC104 Silent p.N132N 0.61 TCGA-98-8021-01 2 63609099 63609099 G A WDPCP Silent p.I522I 0.24 TCGA-98-8021-01 2 63661048 63661048 C T WDPCP Missense_Mutation p.G219D 0.23 deleterious(0) probably_damaging(1) TCGA-98-8021-01 2 64118325 64118325 G C UGP2 Missense_Mutation p.K497N 0.22 tolerated(0.05) benign(0.076) TCGA-98-8021-01 2 66691284 66691284 C T MEIS1 Missense_Mutation p.S225L 0.27 tolerated(0.85) benign(0.313) TCGA-98-8021-01 2 675565 675565 G A TMEM18 Silent p.L41L 0.15 TCGA-98-8021-01 2 71159905 71159905 C G VAX2 Silent p.V148V 0.12 TCGA-98-8021-01 2 71753383 71753383 G A DYSF Missense_Mutation p.D395N 0.18 deleterious(0) probably_damaging(1) TCGA-98-8021-01 2 73053074 73053074 C A EXOC6B 5'UTR 0.12 TCGA-98-8021-01 2 73989767 73989767 G C DUSP11 3'UTR 0.15 TCGA-98-8021-01 2 74491350 74491350 C A SLC4A5 Silent p.L213L 0.07 TCGA-98-8021-01 2 74699698 74699698 C T MRPL53 Silent p.T30T 0.21 TCGA-98-8021-01 2 75923437 75923437 C T GCFC2 Missense_Mutation p.R241K 0.23 tolerated(0.33) benign(0.055) TCGA-98-8021-01 2 76975803 76975803 G A LRRTM4 3'UTR 0.12 TCGA-98-8021-01 2 84518461 84518461 C T FUNDC2P2 RNA 0.15 TCGA-98-8021-01 2 85890886 85890886 A T SFTPB Missense_Mutation p.Y265N 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-98-8021-01 2 88857315 88857315 G C EIF2AK3 Nonsense_Mutation p.S1097* 0.16 TCGA-98-8021-01 2 89028795 89028795 G T RPIA Splice_Site p.X135_splice 0.23 TCGA-98-8021-01 2 96858163 96858163 T A STARD7 Missense_Mutation p.R263W 0.24 deleterious(0) probably_damaging(1) TCGA-98-8021-01 2 96947634 96947634 G A SNRNP200 Missense_Mutation p.R1648W 0.06 deleterious(0) probably_damaging(0.989) TCGA-98-8021-01 2 97526916 97526916 G A SEMA4C Missense_Mutation p.S650L 0.24 tolerated(0.59) benign(0.079) TCGA-98-8021-01 2 99634664 99634664 C A TSGA10 Nonsense_Mutation p.E691* 0.39 TCGA-98-8021-01 3 100594359 100594359 C G ABI3BP Silent p.V277V 0.17 TCGA-98-8021-01 3 101117730 101117730 G A SENP7 Missense_Mutation p.H218Y 0.14 tolerated(0.07) benign(0.282) TCGA-98-8021-01 3 108298440 108298440 C G KIAA1524 Missense_Mutation p.L215F 0.06 deleterious(0) probably_damaging(0.998) TCGA-98-8021-01 3 108635019 108635019 C G GUCA1C Missense_Mutation p.E133Q 0.16 tolerated(0.08) benign(0.116) TCGA-98-8021-01 3 111264041 111264041 C A CD96 Silent p.V70V 0.17 TCGA-98-8021-01 3 112066586 112066586 C T CD200 Silent p.I226I 0.06 TCGA-98-8021-01 3 113619977 113619977 G A GRAMD1C Missense_Mutation p.E214K 0.16 deleterious(0.03) possibly_damaging(0.488) TCGA-98-8021-01 3 119128372 119128372 G A ARHGAP31 Missense_Mutation p.D559N 0.18 tolerated(0.09) benign(0.011) TCGA-98-8021-01 3 121303889 121303889 G C ARGFX Missense_Mutation p.D116H 0.08 deleterious(0.03) benign(0.011) TCGA-98-8021-01 3 122152532 122152532 G A KPNA1 Missense_Mutation p.S409F 0.04 deleterious(0) probably_damaging(0.983) TCGA-98-8021-01 3 123005625 123005625 C T ADCY5 Silent p.V1188V 0.09 TCGA-98-8021-01 3 123008721 123008721 G A ADCY5 Silent p.N1136N 0.06 TCGA-98-8021-01 3 123332921 123332921 G C MYLK 3'UTR 0.15 TCGA-98-8021-01 3 126071091 126071091 G A KLF15 Silent p.P225P 0.28 TCGA-98-8021-01 3 126135237 126135237 C A CCDC37 Missense_Mutation p.L102M 0.14 tolerated(0.08) benign(0.232) TCGA-98-8021-01 3 127325164 127325164 G C MCM2 Missense_Mutation p.E293Q 0.16 tolerated(0.44) benign(0.175) TCGA-98-8021-01 3 127379667 127379667 G A PODXL2 Missense_Mutation p.E266K 0.08 tolerated(0.74) benign(0.021) TCGA-98-8021-01 3 128706456 128706456 C A KIAA1257 Intron 0.09 TCGA-98-8021-01 3 129007759 129007759 C T HMCES Silent p.F82F 0.06 TCGA-98-8021-01 3 129155998 129155998 C T MBD4 Silent p.L163L 0.11 TCGA-98-8021-01 3 129223189 129223189 G A IFT122 Missense_Mutation p.E910K 0.06 tolerated(0.32) possibly_damaging(0.474) TCGA-98-8021-01 3 130698207 130698207 C G ATP2C1 Nonsense_Mutation p.S596* 0.10 TCGA-98-8021-01 3 132418199 132418199 C T NPHP3 Nonsense_Mutation p.W661* 0.08 TCGA-98-8021-01 3 133327531 133327531 C G TOPBP1 Missense_Mutation p.G1425R 0.12 tolerated(0.11) benign(0.427) TCGA-98-8021-01 3 133647443 133647443 C T C3orf36 Missense_Mutation p.E69K 0.14 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-98-8021-01 3 13381489 13381489 G A NUP210 Silent p.F1112F 0.14 TCGA-98-8021-01 3 138417901 138417901 C G PIK3CB Missense_Mutation p.E540Q 0.11 tolerated(0.22) benign(0.303) TCGA-98-8021-01 3 138433425 138433425 C G PIK3CB Missense_Mutation p.R396T 0.13 deleterious(0) probably_damaging(0.999) TCGA-98-8021-01 3 139085494 139085494 C T COPB2 Silent p.R600R 0.05 TCGA-98-8021-01 3 141889299 141889299 C - GK5 Frame_Shift_Del p.A437Qfs*14 0.18 TCGA-98-8021-01 3 141900354 141900354 C T GK5 Missense_Mutation p.E333K 0.08 deleterious(0) probably_damaging(0.973) TCGA-98-8021-01 3 14770004 14770004 G C C3orf20 Missense_Mutation p.K583N 0.22 deleterious(0.03) benign(0.046) TCGA-98-8021-01 3 148768071 148768071 G A HLTF Missense_Mutation p.S522L 0.08 deleterious(0.01) probably_damaging(0.934) TCGA-98-8021-01 3 150908683 150908683 G A MED12L Missense_Mutation p.E645K 0.06 tolerated(0.11) possibly_damaging(0.781) TCGA-98-8021-01 3 150931661 150931661 G C P2RY14 Silent p.L148L 0.13 TCGA-98-8021-01 3 15116203 15116203 C T ZFYVE20 Missense_Mutation p.E481K 0.32 deleterious(0) probably_damaging(0.96) TCGA-98-8021-01 3 154042025 154042025 C T DHX36 Missense_Mutation p.E61K 0.06 deleterious(0.03) benign(0.251) TCGA-98-8021-01 3 155241760 155241760 C T PLCH1 Missense_Mutation p.A454T 0.44 deleterious(0) probably_damaging(0.987) TCGA-98-8021-01 3 165547411 165547411 C T BCHE Missense_Mutation p.E471K 0.06 deleterious(0) probably_damaging(0.958) TCGA-98-8021-01 3 167189608 167189608 G A SERPINI2 Silent p.F5F 0.07 TCGA-98-8021-01 3 167507057 167507057 C G SERPINI1 Silent p.L47L 0.15 TCGA-98-8021-01 3 169511469 169511469 G A LRRC34 Missense_Mutation p.S450L 0.12 tolerated(0.12) benign(0.029) TCGA-98-8021-01 3 170078524 170078524 C T SKIL Silent p.L135L 0.10 TCGA-98-8021-01 3 170219037 170219037 G C SLC7A14 Missense_Mutation p.F134L 0.11 tolerated(0.17) benign(0.241) TCGA-98-8021-01 3 171452736 171452736 G A PLD1 Silent p.V153V 0.11 TCGA-98-8021-01 3 172163134 172163134 G A GHSR Silent p.L306L 0.10 TCGA-98-8021-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.08 deleterious(0.02) probably_damaging(0.959) TCGA-98-8021-01 3 178962346 178962346 G C KCNMB3 Silent p.L132L 0.06 TCGA-98-8021-01 3 179533721 179533721 C T PEX5L Silent p.L337L 0.11 TCGA-98-8021-01 3 180665709 180665709 G C FXR1 Silent p.R85R 0.09 TCGA-98-8021-01 3 180680834 180680834 G A FXR1 Missense_Mutation p.G385E 0.05 deleterious(0.03) probably_damaging(0.983) TCGA-98-8021-01 3 183754157 183754157 C T HTR3D Intron 0.15 TCGA-98-8021-01 3 183821996 183821996 G T HTR3E Missense_Mutation p.W102C 0.20 deleterious(0) probably_damaging(1) TCGA-98-8021-01 3 183854397 183854397 C T EIF2B5 Intron 0.10 TCGA-98-8021-01 3 184101368 184101368 C T CHRD Nonsense_Mutation p.Q460* 0.08 TCGA-98-8021-01 3 184870595 184870595 G A C3orf70 Missense_Mutation p.S6L 0.10 deleterious_low_confidence(0.02) benign(0.001) TCGA-98-8021-01 3 186289886 186289886 G A DNAJB11 Missense_Mutation p.R24Q 0.12 tolerated(0.12) benign(0.017) TCGA-98-8021-01 3 188327199 188327199 C T LPP Missense_Mutation p.S227L 0.09 deleterious(0.03) benign(0.164) TCGA-98-8021-01 3 196235126 196235126 C G SMCO1 Missense_Mutation p.E93Q 0.04 tolerated(0.17) benign(0.439) TCGA-98-8021-01 3 196387622 196387622 C A NRROS Silent p.R370R 0.08 TCGA-98-8021-01 3 2613203 2613203 G A CNTN4 Missense_Mutation p.E6K 0.45 tolerated(1) benign(0.002) TCGA-98-8021-01 3 3186309 3186309 G C TRNT1 Missense_Mutation p.D175H 0.28 deleterious(0.02) probably_damaging(0.986) TCGA-98-8021-01 3 38318435 38318435 C A SLC22A13 Nonsense_Mutation p.S460* 0.24 TCGA-98-8021-01 3 38738895 38738895 G C SCN10A Nonsense_Mutation p.S1939* 0.43 TCGA-98-8021-01 3 38743370 38743370 C G SCN10A Missense_Mutation p.W1539C 0.13 deleterious(0) probably_damaging(0.991) TCGA-98-8021-01 3 44684940 44684940 C G ZNF197 Nonsense_Mutation p.S773* 0.18 TCGA-98-8021-01 3 44943045 44943045 C T TGM4 Silent p.L229L 0.31 TCGA-98-8021-01 3 48608537 48608537 C T COL7A1 Silent p.V2387V 0.33 TCGA-98-8021-01 3 49095167 49095167 G C QRICH1 Missense_Mutation p.L156V 0.15 tolerated_low_confidence(0.28) benign(0.364) TCGA-98-8021-01 3 49755675 49755675 G T AMIGO3 Silent p.R408R 0.25 TCGA-98-8021-01 3 51475802 51475802 G C VPRBP Missense_Mutation p.L209V 0.17 tolerated(0.27) possibly_damaging(0.496) TCGA-98-8021-01 3 52292612 52292612 C T WDR82 Silent p.P284P 0.15 TCGA-98-8021-01 3 52510574 52510574 G T NISCH Missense_Mutation p.D293Y 0.40 deleterious(0) probably_damaging(1) TCGA-98-8021-01 3 53326339 53326339 C T DCP1A Silent p.V381V 0.09 TCGA-98-8021-01 3 57898221 57898221 C T SLMAP Missense_Mutation p.H571Y 0.35 deleterious_low_confidence(0.05) benign(0.138) TCGA-98-8021-01 3 62356943 62356943 C G FEZF2 Missense_Mutation p.G357R 0.27 deleterious(0.01) probably_damaging(0.995) TCGA-98-8021-01 3 65350572 65350572 G A MAGI1 Silent p.I1082I 0.32 TCGA-98-8021-01 3 87018249 87018249 C A VGLL3 Missense_Mutation p.R143L 0.42 deleterious(0.04) probably_damaging(0.979) TCGA-98-8021-01 3 9799267 9799267 C G CAMK1 Missense_Mutation p.E357Q 0.11 tolerated(0.11) benign(0) TCGA-98-8021-01 3 9807579 9807579 C T OGG1 Silent p.I345I 0.07 TCGA-98-8021-01 3 98188563 98188563 T G OR5K1 Missense_Mutation p.L48R 0.28 deleterious(0) possibly_damaging(0.603) TCGA-98-8021-01 4 103533259 103533259 T C NFKB1 Missense_Mutation p.L804P 0.50 tolerated(0.25) possibly_damaging(0.694) TCGA-98-8021-01 4 113360989 113360989 G C ALPK1 Missense_Mutation p.E1167Q 0.31 deleterious(0.01) probably_damaging(0.993) TCGA-98-8021-01 4 119273867 119273867 G A PRSS12 Silent p.L3L 0.25 TCGA-98-8021-01 4 120213693 120213693 C A USP53 Missense_Mutation p.S850Y 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.629) TCGA-98-8021-01 4 123317432 123317432 G C ADAD1 Missense_Mutation p.K208N 0.28 deleterious(0.04) benign(0.033) TCGA-98-8021-01 4 13602335 13602335 C T BOD1L1 Silent p.G2063G 0.21 TCGA-98-8021-01 4 156784707 156784707 G T ASIC5 Silent p.I80I 0.35 TCGA-98-8021-01 4 159747107 159747107 G C FNIP2 Silent p.L49L 0.19 TCGA-98-8021-01 4 166000822 166000822 T A TMEM192 Silent p.P268P 0.39 TCGA-98-8021-01 4 17838899 17838899 G C NCAPG Missense_Mutation p.E743Q 0.10 deleterious(0) probably_damaging(0.928) TCGA-98-8021-01 4 1807568 1807568 C T FGFR3 Silent p.F581F 0.17 TCGA-98-8021-01 4 185940045 185940045 C G HELT 5'Flank 0.42 TCGA-98-8021-01 4 187540323 187540323 T A FAT1 Nonsense_Mutation p.R2473* 0.22 TCGA-98-8021-01 4 20731749 20731749 C T KCNIP4 Missense_Mutation p.E237K 0.30 deleterious(0.05) benign(0.033) TCGA-98-8021-01 4 24578263 24578263 G A DHX15 Missense_Mutation p.S37F 0.35 tolerated_low_confidence(0.09) possibly_damaging(0.831) TCGA-98-8021-01 4 31144235 31144235 A G PCDH7 Missense_Mutation p.M1178V 0.39 tolerated(0.4) benign(0.062) TCGA-98-8021-01 4 3317900 3317900 G T RGS12 Translation_Start_Site p.M1? 0.16 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-98-8021-01 4 38829186 38829186 G A TLR6 Nonsense_Mutation p.Q637* 0.11 TCGA-98-8021-01 4 38829264 38829264 G A TLR6 Silent p.L611L 0.10 TCGA-98-8021-01 4 38830000 38830000 G T TLR6 Missense_Mutation p.F365L 0.20 tolerated(1) benign(0.001) TCGA-98-8021-01 4 39000291 39000291 C G TMEM156 Missense_Mutation p.M109I 0.20 tolerated(0.23) benign(0.015) TCGA-98-8021-01 4 40356612 40356612 A G CHRNA9 3'UTR 0.33 TCGA-98-8021-01 4 47453603 47453603 A T COMMD8 3'UTR 0.38 TCGA-98-8021-01 4 5642531 5642531 C T EVC2 Missense_Mutation p.D394N 0.05 tolerated(0.09) possibly_damaging(0.88) TCGA-98-8021-01 4 5858003 5858003 G A CRMP1 Silent p.S229S 0.17 TCGA-98-8021-01 4 6865586 6865586 G A KIAA0232 Silent p.E1159E 0.06 TCGA-98-8021-01 4 69795464 69795464 C T UGT2A3 3'UTR 0.10 TCGA-98-8021-01 4 77230844 77230844 G A FAM47E-STBD1 Silent p.V256V 0.16 TCGA-98-8021-01 4 90170901 90170901 G C GPRIN3 Missense_Mutation p.L121V 0.24 tolerated(0.28) benign(0.021) TCGA-98-8021-01 5 102895156 102895156 T G NUDT12 Missense_Mutation p.I74L 0.46 tolerated(0.49) benign(0.002) TCGA-98-8021-01 5 108717351 108717351 G C PJA2 Missense_Mutation p.Q29E 0.22 deleterious(0.03) probably_damaging(0.957) TCGA-98-8021-01 5 109200831 109200831 C G MAN2A1 Missense_Mutation p.S1089C 0.10 deleterious(0.05) probably_damaging(0.974) TCGA-98-8021-01 5 11199669 11199669 C T CTNND2 Silent p.G622G 0.10 TCGA-98-8021-01 5 114473103 114473103 C G TRIM36 Missense_Mutation p.D360H 0.37 deleterious(0) probably_damaging(0.999) TCGA-98-8021-01 5 118485051 118485051 G T DMXL1 Missense_Mutation p.G1177C 0.38 tolerated(0.09) benign(0.008) TCGA-98-8021-01 5 121487703 121487703 G A ZNF474 Silent p.K6K 0.42 TCGA-98-8021-01 5 1232362 1232362 G T SLC6A18 Silent p.A63A 0.20 TCGA-98-8021-01 5 130500806 130500806 G C HINT1 Missense_Mutation p.I31M 0.10 deleterious(0.01) possibly_damaging(0.904) TCGA-98-8021-01 5 131007453 131007453 G A FNIP1 Missense_Mutation p.S895L 0.11 tolerated(0.18) benign(0.087) TCGA-98-8021-01 5 134023978 134023978 C T SEC24A Missense_Mutation p.S571L 0.27 tolerated(0.16) possibly_damaging(0.884) TCGA-98-8021-01 5 13823435 13823435 G C DNAH5 Silent p.L2208L 0.18 TCGA-98-8021-01 5 138253441 138253441 C A CTNNA1 Missense_Mutation p.A467D 0.18 deleterious(0) probably_damaging(0.998) TCGA-98-8021-01 5 140242757 140242757 T A AC005609.1 Silent p.A73A 0.75 TCGA-98-8021-01 5 140580932 140580932 T A PCDHB11 Missense_Mutation p.F529I 0.26 deleterious_low_confidence(0) possibly_damaging(0.491) TCGA-98-8021-01 5 140745314 140745314 T G PCDHGA5 Missense_Mutation p.S473A 0.48 deleterious_low_confidence(0.02) benign(0.26) TCGA-98-8021-01 5 1432781 1432781 A T SLC6A3 Missense_Mutation p.Y151N 0.39 deleterious(0) probably_damaging(0.992) TCGA-98-8021-01 5 150073736 150073736 G A RBM22 Silent p.F271F 0.23 TCGA-98-8021-01 5 150666947 150666947 G C SLC36A3 Missense_Mutation p.R231G 0.14 deleterious(0) probably_damaging(0.912) TCGA-98-8021-01 5 153056561 153056561 C G GRIA1 Missense_Mutation p.S300C 0.18 deleterious(0.04) probably_damaging(1) TCGA-98-8021-01 5 154272018 154272018 G A GEMIN5 Missense_Mutation p.A1230V 0.42 deleterious(0) possibly_damaging(0.823) TCGA-98-8021-01 5 154339582 154339582 G T MRPL22 Missense_Mutation p.V128L 0.47 deleterious(0.04) possibly_damaging(0.908) TCGA-98-8021-01 5 154395327 154395327 G A KIF4B Silent p.L636L 0.20 TCGA-98-8021-01 5 157243832 157243832 T C CLINT1 Silent p.T51T 0.33 TCGA-98-8021-01 5 15928251 15928251 C T FBXL7 Missense_Mutation p.S127F 0.16 deleterious(0) possibly_damaging(0.683) TCGA-98-8021-01 5 161128595 161128595 G C GABRA6 Missense_Mutation p.R393T 0.13 tolerated(0.59) benign(0) TCGA-98-8021-01 5 162896695 162896695 G A HMMR Missense_Mutation p.D108N 0.21 tolerated(0.22) benign(0.031) TCGA-98-8021-01 5 170626727 170626727 G C RANBP17 Missense_Mutation p.E698Q 0.22 tolerated(0.17) possibly_damaging(0.478) TCGA-98-8021-01 5 176335646 176335646 G A UIMC1 Nonsense_Mutation p.Q576* 0.19 TCGA-98-8021-01 5 24511565 24511565 G A CDH10 Silent p.V291V 0.13 TCGA-98-8021-01 5 2749119 2749119 C T IRX2 Missense_Mutation p.E235K 0.18 tolerated(0.13) benign(0.174) TCGA-98-8021-01 5 32395267 32395267 C G ZFR Missense_Mutation p.M659I 0.22 deleterious(0.04) unknown(0) TCGA-98-8021-01 5 32417852 32417852 C G ZFR Missense_Mutation p.D156H 0.16 deleterious(0.01) probably_damaging(0.99) TCGA-98-8021-01 5 35670279 35670279 G A SPEF2 Missense_Mutation p.E492K 0.10 deleterious(0) probably_damaging(0.989) TCGA-98-8021-01 5 36985032 36985032 G T NIPBL Missense_Mutation p.D584Y 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.733) TCGA-98-8021-01 5 38338883 38338883 G A EGFLAM Silent p.T97T 0.30 TCGA-98-8021-01 5 42718567 42718567 G C GHR Missense_Mutation p.E320Q 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-98-8021-01 5 43295919 43295919 C T HMGCS1 Silent p.L280L 0.21 TCGA-98-8021-01 5 44310550 44310550 C G FGF10 Missense_Mutation p.K136N 0.27 deleterious(0) possibly_damaging(0.788) TCGA-98-8021-01 5 45303768 45303768 G T HCN1 Missense_Mutation p.H517Q 0.19 deleterious(0.02) probably_damaging(0.992) TCGA-98-8021-01 5 50130821 50130821 G T PARP8 Missense_Mutation p.D812Y 0.50 deleterious(0) probably_damaging(0.992) TCGA-98-8021-01 5 52978959 52978959 G C NDUFS4 Missense_Mutation p.D146H 0.19 tolerated(0.49) possibly_damaging(0.82) TCGA-98-8021-01 5 54555746 54555746 G C DHX29 Missense_Mutation p.F1329L 0.11 tolerated(0.11) benign(0.376) TCGA-98-8021-01 5 54619995 54619995 C T SKIV2L2 Missense_Mutation p.S103L 0.30 tolerated(0.17) benign(0.001) TCGA-98-8021-01 5 55168139 55168139 C G IL31RA Missense_Mutation p.S105C 0.36 deleterious(0) probably_damaging(0.96) TCGA-98-8021-01 5 56161230 56161230 C T MAP3K1 Nonsense_Mutation p.Q367* 0.18 TCGA-98-8021-01 5 59941402 59941402 C G DEPDC1B Missense_Mutation p.E165D 0.30 tolerated(0.31) benign(0.008) TCGA-98-8021-01 5 71492329 71492329 C T MAP1B Silent p.V1049V 0.25 TCGA-98-8021-01 5 71616258 71616258 C T PTCD2 Missense_Mutation p.L17F 0.19 deleterious(0.04) possibly_damaging(0.549) TCGA-98-8021-01 5 71616269 71616269 G A PTCD2 Silent p.A20A 0.25 TCGA-98-8021-01 5 72980695 72980695 G A ARHGEF28 Missense_Mutation p.E7K 0.21 tolerated(0.38) benign(0.004) TCGA-98-8021-01 5 76129554 76129554 C T F2RL1 Silent p.L374L 0.27 TCGA-98-8021-01 5 76621481 76621481 C G PDE8B Missense_Mutation p.L173V 0.19 tolerated(0.05) probably_damaging(0.957) TCGA-98-8021-01 5 914646 914646 G A TRIP13 Missense_Mutation p.E363K 0.09 tolerated(0.12) benign(0.005) TCGA-98-8021-01 6 105225087 105225087 G A HACE1 Missense_Mutation p.H558Y 0.14 deleterious(0.01) benign(0.356) TCGA-98-8021-01 6 109764184 109764184 C T SMPD2 Missense_Mutation p.S210F 0.17 tolerated(0.28) benign(0.021) TCGA-98-8021-01 6 111714131 111714131 C T REV3L Missense_Mutation p.G204R 0.14 tolerated(0.43) benign(0.002) TCGA-98-8021-01 6 116836853 116836853 C G FAM26E Missense_Mutation p.Q211E 0.14 deleterious(0) probably_damaging(0.991) TCGA-98-8021-01 6 117679030 117679030 C G ROS1 Missense_Mutation p.R1264T 0.27 deleterious(0.02) benign(0.075) TCGA-98-8021-01 6 117714449 117714449 G A ROS1 Silent p.I400I 0.09 TCGA-98-8021-01 6 118887344 118887344 G A CEP85L Missense_Mutation p.S126L 0.13 deleterious(0.01) possibly_damaging(0.736) TCGA-98-8021-01 6 12124251 12124251 C A HIVEP1 Missense_Mutation p.S1408Y 0.13 tolerated(0.06) benign(0.004) TCGA-98-8021-01 6 125379145 125379145 G C RNF217 Missense_Mutation p.E100Q 0.12 tolerated(0.1) probably_damaging(0.998) TCGA-98-8021-01 6 129634004 129634004 A G LAMA2 Splice_Site p.X1059_splice 0.11 TCGA-98-8021-01 6 130372430 130372430 A T L3MBTL3 Missense_Mutation p.K109M 0.30 tolerated(0.08) probably_damaging(0.999) TCGA-98-8021-01 6 132032151 132032151 C T CTAGE9 Missense_Mutation p.E3K 0.24 tolerated_low_confidence(0.31) possibly_damaging(0.557) TCGA-98-8021-01 6 132054767 132054767 C G ENPP3 Missense_Mutation p.L665V 0.12 tolerated(0.48) probably_damaging(0.971) TCGA-98-8021-01 6 133827304 133827304 G A EYA4 Missense_Mutation p.D418N 0.31 deleterious(0) possibly_damaging(0.596) TCGA-98-8021-01 6 135521331 135521331 G A MYB Silent p.K606K 0.12 TCGA-98-8021-01 6 135784376 135784376 G C AHI1 Missense_Mutation p.S273C 0.06 deleterious(0) benign(0.235) TCGA-98-8021-01 6 14118064 14118064 C T CD83 Silent p.L8L 0.36 TCGA-98-8021-01 6 143091127 143091127 C G HIVEP2 Missense_Mutation p.Q1583H 0.21 tolerated(0.07) probably_damaging(0.997) TCGA-98-8021-01 6 143092296 143092296 C G HIVEP2 Missense_Mutation p.E1194Q 0.21 tolerated(0.2) possibly_damaging(0.588) TCGA-98-8021-01 6 144780060 144780060 C T UTRN Silent p.V813V 0.12 TCGA-98-8021-01 6 145156976 145156976 G C UTRN Silent p.V3242V 0.11 TCGA-98-8021-01 6 152419922 152419922 T C ESR1 Missense_Mutation p.Y537H 0.31 deleterious(0) probably_damaging(0.997) TCGA-98-8021-01 6 152555817 152555817 G A SYNE1 Silent p.L6839L 0.28 TCGA-98-8021-01 6 152652741 152652741 G A SYNE1 Missense_Mutation p.A4360V 0.27 benign(0.288) TCGA-98-8021-01 6 152708309 152708309 C T SYNE1 Silent p.A2795A 0.16 TCGA-98-8021-01 6 152772224 152772224 C T SYNE1 Silent p.L1048L 0.15 TCGA-98-8021-01 6 154412516 154412516 C T OPRM1 Missense_Mutation p.S451F 0.12 tolerated(0.34) benign(0.142) TCGA-98-8021-01 6 154489206 154489206 T A IPCEF1 Missense_Mutation p.Y318F 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-98-8021-01 6 157256599 157256599 G T ARID1B Splice_Site p.X643_splice 0.12 TCGA-98-8021-01 6 158074623 158074623 C T ZDHHC14 Silent p.I344I 0.14 TCGA-98-8021-01 6 158923821 158923821 C T TULP4 Silent p.G1042G 0.14 TCGA-98-8021-01 6 159188446 159188446 C T EZR Silent p.V481V 0.16 TCGA-98-8021-01 6 160227019 160227019 C T PNLDC1 Missense_Mutation p.P145S 0.11 deleterious(0.04) benign(0.065) TCGA-98-8021-01 6 161006135 161006135 G C LPA Missense_Mutation p.S1411C 0.15 deleterious(0.04) probably_damaging(0.929) TCGA-98-8021-01 6 166912029 166912029 C T RPS6KA2 Silent p.Q246Q 0.28 TCGA-98-8021-01 6 18399820 18399820 C G RNF144B Missense_Mutation p.P19A 0.07 tolerated(0.38) benign(0) TCGA-98-8021-01 6 24460527 24460527 T C GPLD1 Missense_Mutation p.S330G 0.07 tolerated(0.08) benign(0.285) TCGA-98-8021-01 6 24701842 24701842 G A ACOT13 Silent p.%3D 0.12 TCGA-98-8021-01 6 25983894 25983894 T A TRIM38 Missense_Mutation p.F459L 0.34 tolerated(0.06) benign(0.063) TCGA-98-8021-01 6 26027283 26027283 C T HIST1H4B Silent p.V66V 0.07 TCGA-98-8021-01 6 26056443 26056443 C T HIST1H1C Missense_Mutation p.D72N 0.17 tolerated(0.17) possibly_damaging(0.679) TCGA-98-8021-01 6 26056631 26056631 G C HIST1H1C Missense_Mutation p.P9R 0.09 deleterious(0.01) possibly_damaging(0.804) TCGA-98-8021-01 6 26452517 26452517 G A BTN3A3 Missense_Mutation p.G545R 0.23 tolerated(0.18) benign(0.298) TCGA-98-8021-01 6 27775436 27775436 G A HIST1H2BL Silent p.H83H 0.29 TCGA-98-8021-01 6 28116474 28116474 G A ZKSCAN8 Missense_Mutation p.E97K 0.17 deleterious(0) possibly_damaging(0.762) TCGA-98-8021-01 6 28121583 28121583 C G ZKSCAN8 Missense_Mutation p.Q509E 0.17 tolerated(0.27) possibly_damaging(0.782) TCGA-98-8021-01 6 28474110 28474110 G A GPX6 Missense_Mutation p.S113L 0.30 tolerated(0.08) benign(0.063) TCGA-98-8021-01 6 2892085 2892085 G T SERPINB9 Missense_Mutation p.D235E 0.33 tolerated(0.94) benign(0.001) TCGA-98-8021-01 6 29141828 29141828 C A OR2J2 Missense_Mutation p.P139H 0.21 deleterious(0.02) benign(0.136) TCGA-98-8021-01 6 30867008 30867008 G C DDR1 Missense_Mutation p.E899Q 0.04 deleterious(0.03) benign(0.012) TCGA-98-8021-01 6 31118872 31118872 C T CCHCR1 Missense_Mutation p.E277K 0.19 tolerated(0.23) benign(0.019) TCGA-98-8021-01 6 31544345 31544345 C T TNF Missense_Mutation p.A74V 0.22 tolerated(1) benign(0.003) TCGA-98-8021-01 6 31919000 31919000 C G CFB Silent p.V1147V 0.19 TCGA-98-8021-01 6 32021354 32021354 C T TNXB Missense_Mutation p.E2866K 0.19 possibly_damaging(0.502) TCGA-98-8021-01 6 32064772 32064772 C G TNXB Missense_Mutation p.Q286H 0.09 probably_damaging(0.977) TCGA-98-8021-01 6 32096720 32096720 C G FKBPL Missense_Mutation p.E280Q 0.09 tolerated(0.15) probably_damaging(0.927) TCGA-98-8021-01 6 32130721 32130721 C T PPT2 Silent p.L307L 0.09 TCGA-98-8021-01 6 32803487 32803487 C T TAP2 Silent p.R224R 0.08 TCGA-98-8021-01 6 33166142 33166142 G C RXRB Missense_Mutation p.P195A 0.07 deleterious(0.03) benign(0.219) TCGA-98-8021-01 6 33385263 33385263 G T CUTA Silent p.I103I 0.07 TCGA-98-8021-01 6 33561084 33561084 G C GGNBP1 3'Flank 0.32 TCGA-98-8021-01 6 38843592 38843592 G T DNAH8 Missense_Mutation p.V2399F 0.22 possibly_damaging(0.635) TCGA-98-8021-01 6 38885096 38885096 C T DNAH8 Silent p.L3191L 0.06 TCGA-98-8021-01 6 393279 393279 G C IRF4 Missense_Mutation p.E43Q 0.24 deleterious(0) probably_damaging(0.997) TCGA-98-8021-01 6 43193701 43193701 C T DNPH1 Intron 0.19 TCGA-98-8021-01 6 43412920 43412920 C G ABCC10 Missense_Mutation p.F966L 0.15 deleterious(0) possibly_damaging(0.669) TCGA-98-8021-01 6 44121874 44121874 C T TMEM63B Silent p.L725L 0.04 TCGA-98-8021-01 6 44269119 44269119 G A AARS2 Missense_Mutation p.S894L 0.05 deleterious(0.02) benign(0.221) TCGA-98-8021-01 6 47682216 47682216 C G GPR115 Nonsense_Mutation p.S412* 0.20 TCGA-98-8021-01 6 47976431 47976431 G C PTCHD4 Missense_Mutation p.I282M 0.24 deleterious(0.02) probably_damaging(0.961) TCGA-98-8021-01 6 49423890 49423890 C T MUT Missense_Mutation p.D272N 0.15 tolerated_low_confidence(0.71) benign(0.191) TCGA-98-8021-01 6 50786546 50786546 T C TFAP2B 5'UTR 0.29 TCGA-98-8021-01 6 51720718 51720718 C G PKHD1 Missense_Mutation p.E2628D 0.09 tolerated(0.73) benign(0.005) TCGA-98-8021-01 6 63989975 63989975 T C LGSN Missense_Mutation p.N494S 0.28 tolerated(0.37) benign(0.001) TCGA-98-8021-01 6 7393360 7393360 G C RIOK1 Missense_Mutation p.E34Q 0.13 tolerated_low_confidence(0.37) benign(0.01) TCGA-98-8021-01 6 74117707 74117707 T C DDX43 Silent p.N354N 0.35 TCGA-98-8021-01 6 7565733 7565733 C G DSP Missense_Mutation p.Q307E 0.28 benign(0.013) TCGA-98-8021-01 6 75828899 75828899 T A COL12A1 Missense_Mutation p.K2405M 0.17 probably_damaging(1) TCGA-98-8021-01 6 76072558 76072558 C G FILIP1 Missense_Mutation p.A118P 0.09 deleterious(0.03) probably_damaging(0.938) TCGA-98-8021-01 6 76660314 76660314 C T IMPG1 Missense_Mutation p.E597K 0.14 deleterious(0) probably_damaging(1) TCGA-98-8021-01 6 80721673 80721673 C T TTK Missense_Mutation p.S291L 0.20 tolerated(0.22) benign(0.24) TCGA-98-8021-01 6 82460148 82460148 G A FAM46A Missense_Mutation p.S198F 0.29 deleterious(0.03) possibly_damaging(0.873) TCGA-98-8021-01 6 87725887 87725887 C T HTR1E Nonsense_Mutation p.Q279* 0.14 TCGA-98-8021-01 6 89967601 89967601 G C GABRR2 Missense_Mutation p.H396D 0.13 tolerated(0.5) benign(0.124) TCGA-98-8021-01 6 90097270 90097270 G A RRAGD Missense_Mutation p.P63L 0.25 deleterious(0) probably_damaging(0.986) TCGA-98-8021-01 6 90340339 90340339 G C ANKRD6 Missense_Mutation p.M600I 0.31 tolerated(0.4) benign(0) TCGA-98-8021-01 6 90660232 90660232 G A BACH2 Silent p.D531D 0.30 TCGA-98-8021-01 6 96990877 96990877 C T UFL1 Nonsense_Mutation p.Q463* 0.18 TCGA-98-8021-01 7 100279809 100279809 G A GIGYF1 Silent p.V937V 0.13 TCGA-98-8021-01 7 100285831 100285831 C G GIGYF1 Missense_Mutation p.E11Q 0.12 tolerated(0.06) unknown(0) TCGA-98-8021-01 7 100389627 100389627 G A ZAN Silent p.L2522L 0.13 TCGA-98-8021-01 7 100484812 100484812 C T SRRT Missense_Mutation p.H656Y 0.11 tolerated(0.86) benign(0.11) TCGA-98-8021-01 7 100552568 100552568 C G MUC3A Missense_Mutation p.S440C 0.06 tolerated(0.08) probably_damaging(0.922) TCGA-98-8021-01 7 100866779 100866779 G A ZNHIT1 Missense_Mutation p.R72Q 0.12 tolerated(0.05) possibly_damaging(0.849) TCGA-98-8021-01 7 101199090 101199090 G C COL26A1 Missense_Mutation p.R368T 0.11 deleterious(0) probably_damaging(0.996) TCGA-98-8021-01 7 102760544 102760544 C T NAPEPLD Missense_Mutation p.E141K 0.18 tolerated(0.05) benign(0.007) TCGA-98-8021-01 7 102940687 102940687 C G PMPCB Silent p.L130L 0.15 TCGA-98-8021-01 7 107398834 107398834 G A CBLL1 Missense_Mutation p.M229I 0.20 tolerated(0.44) benign(0.008) TCGA-98-8021-01 7 107621088 107621088 G A LAMB1 Missense_Mutation p.P282L 0.34 deleterious(0) probably_damaging(1) TCGA-98-8021-01 7 107677873 107677873 C G LAMB4 Missense_Mutation p.D1547H 0.16 deleterious(0.02) possibly_damaging(0.547) TCGA-98-8021-01 7 111624396 111624396 G A DOCK4 Missense_Mutation p.P172S 0.16 tolerated(0.22) benign(0.014) TCGA-98-8021-01 7 117307012 117307012 G A CFTR Silent p.L1431L 0.22 TCGA-98-8021-01 7 117420638 117420638 C G CTTNBP2 Missense_Mutation p.E794Q 0.17 deleterious(0.05) benign(0.174) TCGA-98-8021-01 7 120906494 120906494 T A CPED1 Missense_Mutation p.L842M 0.30 deleterious(0) probably_damaging(1) TCGA-98-8021-01 7 123594348 123594348 G A SPAM1 Missense_Mutation p.E242K 0.25 deleterious(0) probably_damaging(0.98) TCGA-98-8021-01 7 126410051 126410051 C A GRM8 Missense_Mutation p.V409L 0.11 deleterious(0) probably_damaging(0.992) TCGA-98-8021-01 7 126883139 126883139 T C GRM8 Missense_Mutation p.I40M 0.26 deleterious(0) probably_damaging(0.986) TCGA-98-8021-01 7 128846075 128846075 C T SMO Silent p.L335L 0.09 TCGA-98-8021-01 7 129093177 129093177 C G STRIP2 Missense_Mutation p.H173Q 0.15 tolerated(0.16) benign(0.356) TCGA-98-8021-01 7 129125466 129125466 G C STRIP2 Missense_Mutation p.L767F 0.08 deleterious(0) probably_damaging(0.999) TCGA-98-8021-01 7 135258414 135258414 C T NUP205 Nonsense_Mutation p.Q62* 0.09 TCGA-98-8021-01 7 138764510 138764510 T G ZC3HAV1 Missense_Mutation p.T393P 0.36 tolerated(0.1) probably_damaging(0.969) TCGA-98-8021-01 7 139285343 139285343 C G HIPK2 Splice_Site p.X752_splice 0.15 TCGA-98-8021-01 7 140273755 140273755 G A DENND2A Silent p.F433F 0.18 TCGA-98-8021-01 7 142605749 142605749 G A TRPV5 Silent p.N707N 0.18 TCGA-98-8021-01 7 142983646 142983646 G A TMEM139 Silent p.E125E 0.12 TCGA-98-8021-01 7 143088717 143088717 C T EPHA1 Missense_Mutation p.A950T 0.13 tolerated(0.75) benign(0.144) TCGA-98-8021-01 7 14378288 14378288 A G DGKB Silent p.I659I 0.30 TCGA-98-8021-01 7 146825817 146825817 G T CNTNAP2 Missense_Mutation p.K324N 0.31 deleterious(0.03) probably_damaging(0.995) TCGA-98-8021-01 7 1484884 1484884 C A MICALL2 Missense_Mutation p.Q274H 0.33 tolerated(0.11) possibly_damaging(0.646) TCGA-98-8021-01 7 148910871 148910871 C G ZNF282 Nonsense_Mutation p.S382* 0.19 TCGA-98-8021-01 7 149477932 149477932 G T SSPO RNA 0.32 TCGA-98-8021-01 7 151970789 151970789 C T KMT2C Splice_Site p.X338_splice 0.04 TCGA-98-8021-01 7 16445754 16445754 C T ISPD Missense_Mutation p.D156N 0.09 deleterious(0) probably_damaging(1) TCGA-98-8021-01 7 20198403 20198403 G A MACC1 Silent p.I527I 0.16 TCGA-98-8021-01 7 21737805 21737805 C G DNAH11 Missense_Mutation p.L2059V 0.18 probably_damaging(0.987) TCGA-98-8021-01 7 22194151 22194151 C T RAPGEF5 Missense_Mutation p.E417K 0.08 deleterious(0.01) benign(0.37) TCGA-98-8021-01 7 23357272 23357272 C G IGF2BP3 Missense_Mutation p.E461Q 0.17 deleterious(0.01) probably_damaging(0.97) TCGA-98-8021-01 7 26236961 26236961 C G HNRNPA2B1 Missense_Mutation p.E92Q 0.17 deleterious(0.03) possibly_damaging(0.876) TCGA-98-8021-01 7 30811121 30811121 C G FAM188B Silent p.L4L 0.19 TCGA-98-8021-01 7 34094779 34094779 C T BMPER Missense_Mutation p.S264F 0.14 deleterious(0.04) probably_damaging(0.979) TCGA-98-8021-01 7 36463535 36463535 C G ANLN Missense_Mutation p.F862L 0.08 deleterious(0) probably_damaging(0.991) TCGA-98-8021-01 7 4273000 4273000 G A SDK1 Missense_Mutation p.V1981M 0.20 deleterious(0) benign(0.2) TCGA-98-8021-01 7 43917273 43917273 C T URGCP Missense_Mutation p.G597R 0.23 tolerated(0.48) benign(0.021) TCGA-98-8021-01 7 45004650 45004650 G A MYO1G Missense_Mutation p.S807L 0.18 tolerated(0.07) probably_damaging(0.989) TCGA-98-8021-01 7 47944191 47944191 G A PKD1L1 Missense_Mutation p.S572F 0.08 deleterious(0) probably_damaging(0.955) TCGA-98-8021-01 7 4796771 4796771 G C FOXK1 Missense_Mutation p.Q399H 0.06 deleterious(0.01) probably_damaging(0.97) TCGA-98-8021-01 7 4841324 4841324 C T RADIL Silent p.Q934Q 0.42 TCGA-98-8021-01 7 53103480 53103480 C T POM121L12 Missense_Mutation p.T39M 0.49 deleterious(0.03) benign(0.154) TCGA-98-8021-01 7 5540349 5540349 C T FBXL18 Silent p.Q517Q 0.19 TCGA-98-8021-01 7 55902158 55902158 G T SEPT14 Missense_Mutation p.T227K 0.36 deleterious(0.01) benign(0.345) TCGA-98-8021-01 7 64168606 64168606 G C ZNF107 Missense_Mutation p.G642R 0.15 deleterious(0.01) probably_damaging(1) TCGA-98-8021-01 7 64168607 64168607 G T ZNF107 Missense_Mutation p.G642V 0.16 deleterious(0.01) probably_damaging(1) TCGA-98-8021-01 7 64389132 64389132 C T ZNF273 Missense_Mutation p.H476Y 0.06 deleterious(0.01) probably_damaging(0.993) TCGA-98-8021-01 7 70163581 70163581 C G AUTS2 Silent p.L239L 0.22 TCGA-98-8021-01 7 7612114 7612114 G T MIOS Missense_Mutation p.G3V 0.24 tolerated(0.1) possibly_damaging(0.671) TCGA-98-8021-01 7 81334752 81334752 G C HGF Missense_Mutation p.S655C 0.19 deleterious(0) probably_damaging(0.96) TCGA-98-8021-01 7 94229988 94229988 G T SGCE Missense_Mutation p.A336D 0.38 deleterious(0) possibly_damaging(0.617) TCGA-98-8021-01 7 94991799 94991799 T C PON3 Missense_Mutation p.I261V 0.35 tolerated(0.39) benign(0.006) TCGA-98-8021-01 7 99022511 99022511 C T ATP5J2-PTCD1 Silent p.K597K 0.25 TCGA-98-8021-01 7 99463623 99463623 G A CYP3A43 Silent p.%3D 0.15 TCGA-98-8021-01 7 99526874 99526874 C T GJC3 Missense_Mutation p.D124N 0.18 tolerated(0.17) possibly_damaging(0.567) TCGA-98-8021-01 7 99704338 99704338 C T AP4M1 Missense_Mutation p.P399S 0.16 tolerated(0.12) benign(0.089) TCGA-98-8021-01 7 99720188 99720188 G A CNPY4 Silent p.L110L 0.22 TCGA-98-8021-01 7 99754099 99754099 C T C7orf43 Missense_Mutation p.E384K 0.15 tolerated(0.35) possibly_damaging(0.81) TCGA-98-8021-01 8 101721903 101721903 T C PABPC1 Silent p.P343P 0.35 TCGA-98-8021-01 8 110412375 110412375 C A PKHD1L1 Nonsense_Mutation p.Y361* 0.35 TCGA-98-8021-01 8 110464453 110464453 C G PKHD1L1 Missense_Mutation p.L2151V 0.23 deleterious(0.03) benign(0.09) TCGA-98-8021-01 8 11412964 11412964 G T BLK Missense_Mutation p.G248V 0.46 deleterious(0) probably_damaging(0.997) TCGA-98-8021-01 8 11606552 11606552 G A GATA4 Missense_Mutation p.M247I 0.12 deleterious(0.01) benign(0.137) TCGA-98-8021-01 8 125022954 125022954 G A FER1L6 Silent p.L607L 0.17 TCGA-98-8021-01 8 12878762 12878762 C T KIAA1456 Missense_Mutation p.P192S 0.30 tolerated(0.23) benign(0.017) TCGA-98-8021-01 8 130762713 130762713 G C GSDMC Silent p.L349L 0.12 TCGA-98-8021-01 8 131861944 131861944 C T ADCY8 Silent p.R772R 0.10 TCGA-98-8021-01 8 135612747 135612747 C T ZFAT Missense_Mutation p.D803N 0.16 deleterious(0.04) benign(0.174) TCGA-98-8021-01 8 135649842 135649842 C A ZFAT Missense_Mutation p.A104S 0.18 tolerated(0.4) benign(0.009) TCGA-98-8021-01 8 139189600 139189600 G C FAM135B Missense_Mutation p.Q365E 0.23 deleterious(0) benign(0.314) TCGA-98-8021-01 8 139890430 139890430 C A COL22A1 Missense_Mutation p.R74L 0.45 unknown(0) TCGA-98-8021-01 8 142367663 142367663 G A GPR20 Missense_Mutation p.R121C 0.20 tolerated(0.17) possibly_damaging(0.849) TCGA-98-8021-01 8 144804378 144804378 C T MAPK15 Missense_Mutation p.S531L 0.04 deleterious(0) probably_damaging(0.998) TCGA-98-8021-01 8 145556955 145556955 G C SCRT1 Missense_Mutation p.F313L 0.17 deleterious(0) unknown(0) TCGA-98-8021-01 8 145730063 145730063 C G GPT Missense_Mutation p.T80S 0.12 tolerated(0.07) benign(0.102) TCGA-98-8021-01 8 23117657 23117657 A T CHMP7 Missense_Mutation p.D374V 0.25 deleterious(0) possibly_damaging(0.845) TCGA-98-8021-01 8 27987145 27987145 G C ELP3 Missense_Mutation p.Q248H 0.05 deleterious(0) probably_damaging(1) TCGA-98-8021-01 8 37730015 37730015 C A RAB11FIP1 Nonsense_Mutation p.E769* 0.03 TCGA-98-8021-01 8 37734994 37734994 C T RAB11FIP1 Missense_Mutation p.M149I 0.06 deleterious(0) probably_damaging(0.991) TCGA-98-8021-01 8 37796310 37796310 C G GOT1L1 Missense_Mutation p.E69Q 0.16 deleterious(0) probably_damaging(0.998) TCGA-98-8021-01 8 38271798 38271798 G A FGFR1 Silent p.F717F 0.09 TCGA-98-8021-01 8 38287398 38287398 G A FGFR1 Missense_Mutation p.R87C 0.14 tolerated(0.14) possibly_damaging(0.854) TCGA-98-8021-01 8 39089573 39089573 A G ADAM32 Missense_Mutation p.Y518C 0.07 deleterious(0) probably_damaging(1) TCGA-98-8021-01 8 41529886 41529886 C G ANK1 Missense_Mutation p.E1735D 0.08 tolerated_low_confidence(0.36) benign(0.019) TCGA-98-8021-01 8 42183613 42183613 G C IKBKB Missense_Mutation p.K704N 0.06 tolerated(0.34) benign(0.043) TCGA-98-8021-01 8 42587038 42587038 C T CHRNB3 Silent p.F196F 0.07 TCGA-98-8021-01 8 42611958 42611958 A C CHRNA6 Silent p.G128G 0.18 TCGA-98-8021-01 8 42725174 42725174 C A RNF170 Nonsense_Mutation p.E99* 0.07 TCGA-98-8021-01 8 49986672 49986672 T C C8orf22 Missense_Mutation p.I37T 0.36 tolerated(0.79) benign(0.001) TCGA-98-8021-01 8 56015028 56015028 C G XKR4 5'UTR 0.32 TCGA-98-8021-01 8 61654026 61654026 A T CHD7 Missense_Mutation p.E12V 0.56 benign(0.403) TCGA-98-8021-01 8 61757852 61757852 G A CHD7 Silent p.V1698V 0.10 TCGA-98-8021-01 8 62479742 62479742 T G ASPH Silent p.R429R 0.31 TCGA-98-8021-01 8 6914208 6914208 G T DEFA5 Silent p.I4I 0.35 TCGA-98-8021-01 8 71593445 71593445 G A XKR9 Missense_Mutation p.G51E 0.14 deleterious(0.05) probably_damaging(0.96) TCGA-98-8021-01 8 72128992 72128992 C G EYA1 Missense_Mutation p.R432T 0.23 deleterious(0) benign(0.175) TCGA-98-8021-01 8 77617227 77617227 C T ZFHX4 Missense_Mutation p.R302W 0.16 possibly_damaging(0.835) TCGA-98-8021-01 8 82357075 82357075 T C PMP2 Missense_Mutation p.T75A 0.27 deleterious(0.01) possibly_damaging(0.808) TCGA-98-8021-01 8 97621683 97621683 G C SDC2 Missense_Mutation p.M171I 0.16 deleterious(0) probably_damaging(0.989) TCGA-98-8021-01 8 99142411 99142411 A G POP1 Missense_Mutation p.H231R 0.23 deleterious(0.04) possibly_damaging(0.864) TCGA-98-8021-01 9 100070026 100070026 C T CCDC180 5'UTR 0.17 TCGA-98-8021-01 9 100692659 100692659 G A HEMGN Missense_Mutation p.H340Y 0.07 tolerated(0.93) benign(0.058) TCGA-98-8021-01 9 101536261 101536261 A G ANKS6 Silent p.D573D 0.26 TCGA-98-8021-01 9 115336721 115336721 G A KIAA1958 Missense_Mutation p.D121N 0.17 deleterious(0.01) possibly_damaging(0.892) TCGA-98-8021-01 9 117399281 117399281 C T C9orf91 Silent p.V199V 0.05 TCGA-98-8021-01 9 119460448 119460448 G A TRIM32 Missense_Mutation p.E143K 0.22 deleterious(0.01) benign(0.197) TCGA-98-8021-01 9 123239656 123239656 G C CDK5RAP2 Missense_Mutation p.L567V 0.10 deleterious(0) possibly_damaging(0.899) TCGA-98-8021-01 9 123898183 123898183 G C CNTRL Missense_Mutation p.E709Q 0.10 probably_damaging(0.999) TCGA-98-8021-01 9 125627894 125627894 C G RC3H2 Silent p.T456T 0.45 TCGA-98-8021-01 9 125797698 125797698 G A GPR21 Missense_Mutation p.A285T 0.17 tolerated(0.13) possibly_damaging(0.896) TCGA-98-8021-01 9 126146029 126146029 C T DENND1A Missense_Mutation p.E581K 0.20 tolerated(0.06) benign(0.011) TCGA-98-8021-01 9 126146083 126146083 C T DENND1A Missense_Mutation p.D563N 0.23 deleterious(0.01) benign(0.131) TCGA-98-8021-01 9 127644084 127644084 G A GOLGA1 Silent p.F705F 0.21 TCGA-98-8021-01 9 127916007 127916007 C G PPP6C Missense_Mutation p.Q195H 0.18 tolerated(0.05) benign(0.282) TCGA-98-8021-01 9 131804621 131804621 G A FAM73B Silent p.R45R 0.33 TCGA-98-8021-01 9 132637013 132637013 C G USP20 Missense_Mutation p.I633M 0.05 deleterious(0.04) probably_damaging(0.951) TCGA-98-8021-01 9 133738308 133738308 G A ABL1 Silent p.E255E 0.10 TCGA-98-8021-01 9 134525605 134525605 C T RAPGEF1 Missense_Mutation p.E77K 0.25 deleterious_low_confidence(0.04) possibly_damaging(0.637) TCGA-98-8021-01 9 135073538 135073538 G A NTNG2 Silent p.L133L 0.17 TCGA-98-8021-01 9 135930121 135930121 T G GTF3C5 Missense_Mutation p.H364Q 0.27 tolerated(0.62) benign(0.002) TCGA-98-8021-01 9 138457347 138457347 G A PAEP Silent p.L171L 0.21 TCGA-98-8021-01 9 139651507 139651507 C G LCN8 Silent p.V46V 0.21 TCGA-98-8021-01 9 139658186 139658186 C T LCN15 Missense_Mutation p.E96K 0.13 tolerated(0.24) benign(0.006) TCGA-98-8021-01 9 140099815 140099815 C G TMEM203 Missense_Mutation p.E18Q 0.21 deleterious(0) probably_damaging(1) TCGA-98-8021-01 9 140126165 140126165 C G SLC34A3 Missense_Mutation p.S4C 0.20 deleterious_low_confidence(0.01) probably_damaging(0.984) TCGA-98-8021-01 9 17789475 17789475 G A SH3GL2 Missense_Mutation p.R184H 0.44 tolerated(0.08) benign(0.004) TCGA-98-8021-01 9 19352112 19352112 G A DENND4C Missense_Mutation p.E1464K 0.29 tolerated(0.11) possibly_damaging(0.782) TCGA-98-8021-01 9 22451417 22451417 G T DMRTA1 Missense_Mutation p.R341M 0.52 deleterious(0) probably_damaging(0.946) TCGA-98-8021-01 9 32784752 32784752 G A TMEM215 Missense_Mutation p.E191K 0.38 tolerated_low_confidence(0.43) benign(0.118) TCGA-98-8021-01 9 33295077 33295077 G T NFX1 Missense_Mutation p.D229Y 0.43 deleterious(0) probably_damaging(0.987) TCGA-98-8021-01 9 35753231 35753231 C T MSMP Missense_Mutation p.E96K 0.23 tolerated(0.48) probably_damaging(0.992) TCGA-98-8021-01 9 37495222 37495222 C G POLR1E Missense_Mutation p.P202A 0.11 deleterious(0) possibly_damaging(0.894) TCGA-98-8021-01 9 71491681 71491681 C A PIP5K1B Missense_Mutation p.L97I 0.60 deleterious(0.04) probably_damaging(0.996) TCGA-98-8021-01 9 79930203 79930203 G C VPS13A Missense_Mutation p.D1483H 0.12 tolerated(0.29) possibly_damaging(0.764) TCGA-98-8021-01 9 79933295 79933295 G A VPS13A Missense_Mutation p.E1701K 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-98-8021-01 9 86924626 86924626 C T SLC28A3 Missense_Mutation p.E54K 0.08 tolerated(0.11) benign(0.424) TCGA-98-8021-01 9 91994426 91994426 C T SEMA4D Silent p.L594L 0.22 TCGA-98-8021-01 9 95179620 95179620 G A OMD Missense_Mutation p.S74L 0.07 tolerated(0.71) benign(0.002) TCGA-98-8021-01 9 99525831 99525831 G A ZNF510 Silent p.Y71Y 0.20 TCGA-98-8021-01 X 100079108 100079108 G C CSTF2 Splice_Site p.X189_splice 0.20 TCGA-98-8021-01 X 100911769 100911769 G A ARMCX2 Missense_Mutation p.P269L 0.33 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-98-8021-01 X 101159219 101159219 G C ZMAT1 Nonsense_Mutation p.S69* 0.34 TCGA-98-8021-01 X 102632386 102632386 C T NGFRAP1 Intron 0.17 TCGA-98-8021-01 X 102842244 102842244 A G TCEAL4 Missense_Mutation p.Y214C 0.29 deleterious(0) probably_damaging(0.999) TCGA-98-8021-01 X 103216771 103216771 G A TMSB15B 5'Flank 0.33 TCGA-98-8021-01 X 106066584 106066584 C A TBC1D8B Missense_Mutation p.Q239K 0.39 deleterious(0.01) benign(0) TCGA-98-8021-01 X 107018589 107018589 G A TSC22D3 Silent p.L21L 0.27 TCGA-98-8021-01 X 107148854 107148854 G C MID2 Missense_Mutation p.E357D 0.28 tolerated(0.29) benign(0.019) TCGA-98-8021-01 X 107869539 107869539 G T COL4A5 Missense_Mutation p.G1069V 0.24 unknown(0) TCGA-98-8021-01 X 107977329 107977329 C T IRS4 Missense_Mutation p.R749K 0.13 deleterious(0.05) unknown(0) TCGA-98-8021-01 X 111020010 111020010 G C TRPC5 Missense_Mutation p.P818R 0.10 tolerated_low_confidence(0.44) benign(0) TCGA-98-8021-01 X 114880454 114880454 G A PLS3 Nonsense_Mutation p.W442* 0.21 TCGA-98-8021-01 X 117707849 117707849 G C DOCK11 Silent p.L419L 0.21 TCGA-98-8021-01 X 119739288 119739288 A G MCTS1 Missense_Mutation p.N14S 0.04 tolerated(0.89) benign(0.001) TCGA-98-8021-01 X 120183142 120183142 G A GLUD2 Missense_Mutation p.R535K 0.23 deleterious(0) probably_damaging(0.996) TCGA-98-8021-01 X 123514977 123514977 G T TENM1 Silent p.A2536A 0.25 TCGA-98-8021-01 X 125685813 125685813 G T DCAF12L1 Missense_Mutation p.P260H 0.34 deleterious(0.01) possibly_damaging(0.77) TCGA-98-8021-01 X 129519140 129519140 G A GPR119 Silent p.L94L 0.18 TCGA-98-8021-01 X 13056599 13056599 C G FAM9C Missense_Mutation p.K154N 0.24 deleterious(0) probably_damaging(0.937) TCGA-98-8021-01 X 134993417 134993417 C G SAGE1 Missense_Mutation p.S691C 0.26 deleterious(0.03) probably_damaging(0.984) TCGA-98-8021-01 X 13778810 13778810 G C OFD1 Missense_Mutation p.R744T 0.25 tolerated(0.07) probably_damaging(0.969) TCGA-98-8021-01 X 139865845 139865845 C G CDR1 Missense_Mutation p.K229N 0.18 deleterious(0.01) possibly_damaging(0.607) TCGA-98-8021-01 X 1484123 1484123 C A IL3RA Silent p.A284A 0.18 TCGA-98-8021-01 X 149639762 149639762 G T MAMLD1 Missense_Mutation p.Q614H 0.45 tolerated(0.05) probably_damaging(0.993) TCGA-98-8021-01 X 149814235 149814235 G T MTM1 Missense_Mutation p.R253L 0.23 deleterious(0) probably_damaging(0.998) TCGA-98-8021-01 X 153036806 153036806 C G PLXNB3 Missense_Mutation p.I788M 0.11 deleterious(0) probably_damaging(0.937) TCGA-98-8021-01 X 153543534 153543534 G A TKTL1 Silent p.R292R 0.09 TCGA-98-8021-01 X 153670011 153670011 C T GDI1 Silent p.I287I 0.20 TCGA-98-8021-01 X 16875770 16875770 G C RBBP7 Missense_Mutation p.L226V 0.18 deleterious(0.03) probably_damaging(0.983) TCGA-98-8021-01 X 1718131 1718131 G C AKAP17A Missense_Mutation p.E320Q 0.15 deleterious(0.02) unknown(0) TCGA-98-8021-01 X 17744796 17744796 C T NHS Missense_Mutation p.S836L 0.30 deleterious(0) probably_damaging(0.999) TCGA-98-8021-01 X 18911612 18911612 C A PHKA2 Missense_Mutation p.Q1233H 0.17 tolerated_low_confidence(0.31) benign(0.001) TCGA-98-8021-01 X 19983618 19983618 G A CXorf23 Missense_Mutation p.S273L 0.21 deleterious(0.04) possibly_damaging(0.844) TCGA-98-8021-01 X 20179821 20179821 C A RPS6KA3 Missense_Mutation p.G634C 0.17 deleterious(0) probably_damaging(0.987) TCGA-98-8021-01 X 21761886 21761886 A G SMPX Silent p.C38C 0.12 TCGA-98-8021-01 X 2825298 2825298 C T ARSD 3'UTR 0.08 TCGA-98-8021-01 X 31747774 31747774 T A DMD Missense_Mutation p.E2545V 0.29 possibly_damaging(0.607) TCGA-98-8021-01 X 32305707 32305707 C T DMD Missense_Mutation p.A2077T 0.15 possibly_damaging(0.682) TCGA-98-8021-01 X 41027268 41027268 C T USP9X Silent p.I811I 0.17 TCGA-98-8021-01 X 41047347 41047347 G C USP9X Missense_Mutation p.E1263Q 0.10 tolerated(0.13) benign(0.033) TCGA-98-8021-01 X 41646472 41646472 C G CASK Missense_Mutation p.E79D 0.19 tolerated(0.22) benign(0.079) TCGA-98-8021-01 X 47486211 47486211 T A CFP Missense_Mutation p.T301S 0.38 tolerated(0.11) benign(0.064) TCGA-98-8021-01 X 47497201 47497201 G A ELK1 Silent p.L345L 0.60 TCGA-98-8021-01 X 48762485 48762485 C A SLC35A2 Missense_Mutation p.R234L 0.18 deleterious(0) probably_damaging(0.939) TCGA-98-8021-01 X 49083520 49083520 C G CACNA1F Missense_Mutation p.Q396H 0.35 deleterious(0) probably_damaging(0.999) TCGA-98-8021-01 X 49173707 49173707 G T GAGE10 Missense_Mutation p.G90C 0.13 deleterious(0) probably_damaging(0.984) TCGA-98-8021-01 X 49173708 49173708 G T GAGE10 Missense_Mutation p.G90V 0.14 deleterious(0) probably_damaging(0.943) TCGA-98-8021-01 X 53265510 53265510 C T IQSEC2 Missense_Mutation p.D1149N 0.28 deleterious(0.01) probably_damaging(0.962) TCGA-98-8021-01 X 54956237 54956237 C A TRO Missense_Mutation p.A1027D 0.29 deleterious(0) probably_damaging(0.946) TCGA-98-8021-01 X 57407462 57407462 G A FAAH2 Silent p.K332K 0.23 TCGA-98-8021-01 X 57618994 57618994 C G ZXDB Missense_Mutation p.I171M 0.31 deleterious(0.03) benign(0.019) TCGA-98-8021-01 X 64738325 64738325 T C LAS1L Missense_Mutation p.Q490R 0.37 deleterious(0.04) benign(0.184) TCGA-98-8021-01 X 67937066 67937066 G C STARD8 Missense_Mutation p.E104Q 0.17 deleterious(0) probably_damaging(0.996) TCGA-98-8021-01 X 69479458 69479458 G T P2RY4 Missense_Mutation p.S6Y 0.33 deleterious(0.02) benign(0.037) TCGA-98-8021-01 X 70351461 70351461 C A MED12 Missense_Mutation p.T1370N 0.26 benign(0.017) TCGA-98-8021-01 X 73812419 73812419 T C RLIM Missense_Mutation p.H244R 0.34 tolerated(0.16) unknown(0) TCGA-98-8021-01 X 74293612 74293612 C T ABCB7 Splice_Site p.X316_splice 0.12 TCGA-98-8021-01 X 74649795 74649795 T A ZDHHC15 Missense_Mutation p.H157L 0.07 deleterious(0) probably_damaging(0.999) TCGA-98-8021-01 X 79277742 79277742 C A TBX22 5'UTR 0.25 TCGA-98-8021-01 X 79278716 79278716 G A TBX22 Silent p.E111E 0.12 TCGA-98-8021-01 X 79286000 79286000 G T TBX22 Missense_Mutation p.G318V 0.18 deleterious(0.03) possibly_damaging(0.886) TCGA-98-8021-01 X 90691544 90691544 C T PABPC5 Missense_Mutation p.S323F 0.18 deleterious(0) probably_damaging(0.99) TCGA-98-8021-01 X 92927316 92927316 G A NAP1L3 Nonsense_Mutation p.Q330* 0.19 TCGA-98-8021-01 X 99942032 99942032 C G SYTL4 Intron 0.22 TCGA-98-8022-01 10 100146962 100146962 C G PYROXD2 Missense_Mutation p.G517A 0.08 deleterious(0) probably_damaging(0.971) TCGA-98-8022-01 10 105152158 105152158 G T USMG5 Missense_Mutation p.F19L 0.29 deleterious(0) benign(0.024) TCGA-98-8022-01 10 108469079 108469079 G T SORCS1 Silent p.R349R 0.08 TCGA-98-8022-01 10 120094693 120094693 T C FAM204A Missense_Mutation p.E129G 0.28 tolerated(0.08) probably_damaging(0.92) TCGA-98-8022-01 10 12131159 12131159 G C DHTKD1 Missense_Mutation p.V298L 0.05 tolerated(0.38) benign(0.012) TCGA-98-8022-01 10 127782582 127782582 C T ADAM12 Missense_Mutation p.G376R 0.06 deleterious(0) probably_damaging(1) TCGA-98-8022-01 10 133955457 133955457 C T JAKMIP3 Missense_Mutation p.R503W 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-98-8022-01 10 135346310 135346310 C T CYP2E1 Nonsense_Mutation p.Q255* 0.15 TCGA-98-8022-01 10 21784509 21784509 C G CASC10 3'UTR 0.17 TCGA-98-8022-01 10 35485046 35485046 C T CREM Intron 0.14 TCGA-98-8022-01 10 74033934 74033935 CT - DDIT4 5'UTR 0.11 TCGA-98-8022-01 10 7830180 7830180 C T ATP5C1 Missense_Mutation p.R4C 0.26 deleterious(0) possibly_damaging(0.487) TCGA-98-8022-01 10 91497194 91497194 G A KIF20B Missense_Mutation p.E826K 0.28 tolerated(0.25) possibly_damaging(0.857) TCGA-98-8022-01 10 91528097 91528097 G T KIF20B Missense_Mutation p.L1640F 0.11 tolerated(0.28) benign(0.014) TCGA-98-8022-01 10 93970 93970 C G TUBB8 Missense_Mutation p.R121T 0.07 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-98-8022-01 11 1031898 1031898 C G MUC6 Missense_Mutation p.D91H 0.08 unknown(0) TCGA-98-8022-01 11 106810291 106810291 T A GUCY1A2 Silent p.V367V 0.14 TCGA-98-8022-01 11 112020853 112020853 G C IL18 Silent p.L56L 0.08 TCGA-98-8022-01 11 119031618 119031618 G T ABCG4 Silent p.T581T 0.08 TCGA-98-8022-01 11 123755195 123755195 A C TMEM225 Splice_Site p.X110_splice 0.17 TCGA-98-8022-01 11 123814242 123814242 A G OR6T1 Missense_Mutation p.Y102H 0.28 deleterious(0) possibly_damaging(0.779) TCGA-98-8022-01 11 133715343 133715343 T A SPATA19 5'UTR 0.25 TCGA-98-8022-01 11 133805657 133805657 G A IGSF9B Silent p.N274N 0.17 TCGA-98-8022-01 11 21556024 21556024 G C NELL1 Missense_Mutation p.D584H 0.27 tolerated(0.08) possibly_damaging(0.461) TCGA-98-8022-01 11 27384503 27384503 T C CCDC34 Missense_Mutation p.D80G 0.13 tolerated(0.1) benign(0.016) TCGA-98-8022-01 11 408706 408706 G A SIGIRR Silent p.H65H 0.26 TCGA-98-8022-01 11 48188941 48188941 G T PTPRJ 3'UTR 0.14 TCGA-98-8022-01 11 5221696 5221696 C G OR51V1 Missense_Mutation p.D79H 0.09 deleterious(0) probably_damaging(1) TCGA-98-8022-01 11 55658774 55658774 A T TRIM51 Missense_Mutation p.Y342F 0.19 deleterious(0.02) probably_damaging(0.967) TCGA-98-8022-01 11 56019694 56019694 G T OR5T3 Missense_Mutation p.G7C 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.486) TCGA-98-8022-01 11 56019840 56019840 C A OR5T3 Silent p.V55V 0.11 TCGA-98-8022-01 11 56143251 56143251 C A OR8U1 Missense_Mutation p.A51E 0.14 deleterious(0.01) benign(0.073) TCGA-98-8022-01 11 5809389 5809389 A G OR52N1 Missense_Mutation p.Y220H 0.23 deleterious(0) probably_damaging(1) TCGA-98-8022-01 11 5862377 5862377 C A OR52E6 Missense_Mutation p.A251S 0.16 tolerated(0.05) benign(0.088) TCGA-98-8022-01 11 60105277 60105277 C T MS4A6E Silent p.L71L 0.03 TCGA-98-8022-01 11 63998332 63998332 G A DNAJC4 Silent p.P2P 0.15 TCGA-98-8022-01 11 70260663 70260663 G C CTTN Missense_Mutation p.E103Q 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-98-8022-01 11 71192452 71192452 T G NADSYN1 Splice_Site p.X349_splice 0.10 TCGA-98-8022-01 11 73760481 73760481 G A C2CD3 Silent p.C1754C 0.11 TCGA-98-8022-01 11 76175093 76175093 C T C11orf30 Missense_Mutation p.S267L 0.06 deleterious(0) benign(0.191) TCGA-98-8022-01 11 78412896 78412896 G C TENM4 Missense_Mutation p.L1588V 0.04 tolerated(1) benign(0.004) TCGA-98-8022-01 11 94278589 94278589 G T FUT4 Silent p.A430A 0.27 TCGA-98-8022-01 12 107395109 107395109 T A CRY1 Silent p.P211P 0.17 TCGA-98-8022-01 12 113601004 113601004 C A DDX54 Nonsense_Mutation p.E672* 0.13 TCGA-98-8022-01 12 116457740 116457740 T G MED13L Silent p.T221T 0.07 TCGA-98-8022-01 12 41966643 41966643 A T PDZRN4 Missense_Mutation p.R688W 0.37 deleterious(0) probably_damaging(0.955) TCGA-98-8022-01 12 52712948 52712948 G C KRT83 Nonsense_Mutation p.Y195* 0.29 TCGA-98-8022-01 12 56848388 56848388 G A MIP Silent p.L4L 0.15 TCGA-98-8022-01 12 6942806 6942806 C G LEPREL2 Silent p.L420L 0.08 TCGA-98-8022-01 12 75445043 75445043 G T KCNC2 Missense_Mutation p.L248M 0.15 deleterious(0.05) probably_damaging(0.98) TCGA-98-8022-01 12 77426856 77426856 A T E2F7 Nonsense_Mutation p.Y452* 0.13 TCGA-98-8022-01 13 107822873 107822873 A T FAM155A Missense_Mutation p.L450Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-98-8022-01 13 111114714 111114714 G A COL4A2 Missense_Mutation p.G587S 0.38 probably_damaging(0.981) TCGA-98-8022-01 13 111160418 111160418 C A COL4A2 Silent p.P1577P 0.43 TCGA-98-8022-01 13 111995124 111995124 A G TEX29 Silent p.K87K 0.59 TCGA-98-8022-01 13 20038649 20038649 C A TPTE2 Missense_Mutation p.A230S 0.29 deleterious(0) probably_damaging(0.998) TCGA-98-8022-01 13 29008192 29008192 T A FLT1 Intron 0.46 TCGA-98-8022-01 13 34405392 34405392 G T RFC3 Splice_Site p.X237_splice 0.13 TCGA-98-8022-01 13 53227198 53227198 C T SUGT1 Missense_Mutation p.S19L 0.40 deleterious(0.02) benign(0.21) TCGA-98-8022-01 13 67801735 67801735 C G PCDH9 Missense_Mutation p.D280H 0.07 deleterious(0) probably_damaging(1) TCGA-98-8022-01 13 74420385 74420385 G T KLF12 Missense_Mutation p.D83E 0.07 deleterious(0) probably_damaging(0.978) TCGA-98-8022-01 13 77779471 77779471 G T MYCBP2 Missense_Mutation p.R1217S 0.09 probably_damaging(0.998) TCGA-98-8022-01 13 92003343 92003343 A G MIR17HG RNA 0.22 TCGA-98-8022-01 13 98828800 98828800 C T RNF113B Missense_Mutation p.E231K 0.38 tolerated(0.11) benign(0.04) TCGA-98-8022-01 14 19377770 19377770 C A OR11H12 Silent p.A59A 0.12 TCGA-98-8022-01 14 21793078 21793078 G A RPGRIP1 Silent p.S688S 0.05 TCGA-98-8022-01 14 33836398 33836398 G A NPAS3 Missense_Mutation p.G131D 0.22 deleterious(0.01) probably_damaging(0.931) TCGA-98-8022-01 14 35182100 35182100 C T CFL2 Missense_Mutation p.V158I 0.10 tolerated(0.33) benign(0.02) TCGA-98-8022-01 14 81744254 81744254 T C STON2 Silent p.L467L 0.32 TCGA-98-8022-01 15 23890053 23890053 C G MAGEL2 Missense_Mutation p.W343S 0.20 tolerated(0.08) probably_damaging(0.997) TCGA-98-8022-01 15 26812877 26812877 G T GABRB3 Missense_Mutation p.A229D 0.07 tolerated(0.21) probably_damaging(0.928) TCGA-98-8022-01 15 33872214 33872214 A G RYR3 Missense_Mutation p.I436V 0.26 benign(0) TCGA-98-8022-01 15 37391557 37391557 C A MEIS2 Intron 0.32 TCGA-98-8022-01 15 40093729 40093729 T C GPR176 Silent p.T384T 0.31 TCGA-98-8022-01 15 43816727 43816727 C A MAP1A Missense_Mutation p.S1019Y 0.30 probably_damaging(0.957) TCGA-98-8022-01 15 55965860 55965860 G T PRTG Missense_Mutation p.P521T 0.13 deleterious(0) probably_damaging(1) TCGA-98-8022-01 15 73581520 73581520 C G NEO1 Missense_Mutation p.A1228G 0.23 deleterious(0.01) probably_damaging(0.969) TCGA-98-8022-01 15 74654418 74654418 G T CYP11A1 Intron 0.26 TCGA-98-8022-01 15 90931549 90931549 C G IQGAP1 5'UTR 0.09 TCGA-98-8022-01 16 15706513 15706513 G C KIAA0430 Missense_Mutation p.I1125M 0.03 deleterious(0) probably_damaging(0.999) TCGA-98-8022-01 16 22137567 22137567 G T VWA3A Missense_Mutation p.R534L 0.28 deleterious(0) probably_damaging(0.995) TCGA-98-8022-01 16 2474652 2474652 C G CCNF 5'Flank 0.12 TCGA-98-8022-01 16 31477877 31477877 G A ARMC5 Silent p.Q825Q 0.28 TCGA-98-8022-01 16 31486000 31486000 G C TGFB1I1 Missense_Mutation p.Q212H 0.08 deleterious(0.02) probably_damaging(0.957) TCGA-98-8022-01 16 396603 396603 C A AXIN1 Silent p.A141A 0.22 TCGA-98-8022-01 16 68573694 68573694 G C ZFP90 5'UTR 0.14 TCGA-98-8022-01 16 69832601 69832601 C G WWP2 Silent p.P29P 0.08 TCGA-98-8022-01 16 86613201 86613201 G C FOXL1 Missense_Mutation p.G291A 0.33 tolerated(0.09) benign(0.025) TCGA-98-8022-01 16 89977645 89977645 G C TCF25 Nonstop_Mutation p.*677Sext*26 0.09 TCGA-98-8022-01 16 9858641 9858641 T A GRIN2A Missense_Mutation p.R920S 0.27 tolerated(0.65) benign(0.328) TCGA-98-8022-01 17 10348373 10348373 C A MYH4 Missense_Mutation p.D1796Y 0.57 deleterious(0) probably_damaging(1) TCGA-98-8022-01 17 10363414 10363414 T C MYH4 Missense_Mutation p.Y424C 0.46 tolerated(0.13) benign(0.005) TCGA-98-8022-01 17 35804822 35804822 G T TADA2A Missense_Mutation p.D186Y 0.18 deleterious(0) probably_damaging(0.987) TCGA-98-8022-01 17 38857431 38857431 G T KRT24 Missense_Mutation p.F272L 0.06 tolerated(1) benign(0) TCGA-98-8022-01 17 39116681 39116681 G A KRT39 Silent p.L357L 0.25 TCGA-98-8022-01 17 42290256 42290256 C G UBTF Missense_Mutation p.E197D 0.02 deleterious(0.02) possibly_damaging(0.887) TCGA-98-8022-01 17 43138781 43138781 G A NMT1 Silent p.E28E 0.24 TCGA-98-8022-01 17 47677588 47677588 T A SPOP 3'UTR 0.24 TCGA-98-8022-01 17 59489646 59489646 G C C17orf82 Missense_Mutation p.V104L 0.21 tolerated_low_confidence(0.28) benign(0.075) TCGA-98-8022-01 17 73567786 73567786 G - LLGL2 Frame_Shift_Del p.G740Afs*31 0.09 TCGA-98-8022-01 18 12674555 12674555 A C CEP76 Silent p.R607R 0.14 TCGA-98-8022-01 18 21751441 21751441 C G OSBPL1A Missense_Mutation p.L741F 0.09 deleterious(0) probably_damaging(0.987) TCGA-98-8022-01 18 30350218 30350218 C A KLHL14 Missense_Mutation p.D113Y 0.30 deleterious(0) possibly_damaging(0.856) TCGA-98-8022-01 18 31319853 31319853 C A ASXL3 Missense_Mutation p.H829N 0.08 benign(0.01) TCGA-98-8022-01 18 59195254 59195254 C A CDH20 Missense_Mutation p.P358T 0.17 tolerated(1) benign(0.003) TCGA-98-8022-01 18 60017074 60017074 A G TNFRSF11A Missense_Mutation p.T63A 0.35 deleterious(0.04) benign(0.025) TCGA-98-8022-01 18 6093463 6093463 T A L3MBTL4 Nonsense_Mutation p.R422* 0.37 TCGA-98-8022-01 18 61323223 61323223 C T SERPINB3 Missense_Mutation p.D281N 0.06 tolerated(0.51) benign(0.026) TCGA-98-8022-01 18 65179013 65179013 C A DSEL Missense_Mutation p.G955C 0.26 tolerated(0.05) possibly_damaging(0.58) TCGA-98-8022-01 18 65179031 65179031 G C DSEL Missense_Mutation p.L949V 0.25 deleterious(0.03) probably_damaging(0.948) TCGA-98-8022-01 18 67992943 67992943 G C SOCS6 Missense_Mutation p.D347H 0.11 deleterious(0) probably_damaging(0.996) TCGA-98-8022-01 19 2933576 2933576 C G ZNF77 Missense_Mutation p.E517Q 0.10 deleterious(0.03) benign(0.035) TCGA-98-8022-01 19 2934311 2934311 C G ZNF77 Missense_Mutation p.E272Q 0.13 tolerated(0.19) benign(0.105) TCGA-98-8022-01 19 2934566 2934566 C G ZNF77 Missense_Mutation p.E187Q 0.11 deleterious(0.04) possibly_damaging(0.859) TCGA-98-8022-01 19 33110452 33110452 G C ANKRD27 Missense_Mutation p.S612C 0.06 deleterious(0.01) possibly_damaging(0.7) TCGA-98-8022-01 19 3532595 3532595 G A FZR1 Missense_Mutation p.D397N 0.28 deleterious(0.01) probably_damaging(0.992) TCGA-98-8022-01 19 3644173 3644173 G C PIP5K1C Silent p.A474A 0.47 TCGA-98-8022-01 19 39691388 39691388 C T NCCRP1 Missense_Mutation p.R274W 0.32 deleterious(0) possibly_damaging(0.896) TCGA-98-8022-01 19 40480454 40480454 G A PSMC4 Missense_Mutation p.A165T 0.09 deleterious(0.05) benign(0.048) TCGA-98-8022-01 19 44585277 44585277 G T ZNF284 Missense_Mutation p.R42I 0.47 deleterious(0) probably_damaging(0.965) TCGA-98-8022-01 19 44840791 44840791 T C ZNF112 Missense_Mutation p.R75G 0.14 deleterious(0.04) benign(0.005) TCGA-98-8022-01 19 50040399 50040399 A C RCN3 Silent p.R185R 0.13 TCGA-98-8022-01 19 52217305 52217305 C G HAS1 Missense_Mutation p.R371P 0.28 deleterious(0) probably_damaging(0.997) TCGA-98-8022-01 19 52250012 52250012 G A FPR1 Missense_Mutation p.P79L 0.06 deleterious(0) probably_damaging(1) TCGA-98-8022-01 19 52658717 52658717 T A ZNF836 Missense_Mutation p.H740L 0.09 deleterious(0) possibly_damaging(0.748) TCGA-98-8022-01 19 53762132 53762132 A C VN1R2 Silent p.A168A 0.12 TCGA-98-8022-01 19 55598783 55598783 G A EPS8L1 Missense_Mutation p.V689M 0.05 deleterious(0.01) possibly_damaging(0.809) TCGA-98-8022-01 19 56244761 56244761 G A NLRP9 Missense_Mutation p.H146Y 0.11 tolerated(1) benign(0.079) TCGA-98-8022-01 19 56443566 56443566 G T NLRP13 Missense_Mutation p.P38T 0.10 tolerated(0.45) benign(0.22) TCGA-98-8022-01 19 58445196 58445196 C A ZNF418 5'UTR 0.13 TCGA-98-8022-01 19 7516049 7516049 C T ARHGEF18 Silent p.F396F 0.55 TCGA-98-8022-01 1 10190809 10190809 A G UBE4B Missense_Mutation p.I617V 0.10 tolerated(0.23) benign(0.055) TCGA-98-8022-01 1 111773433 111773433 C G CHI3L2 Missense_Mutation p.T47S 0.12 deleterious(0.05) possibly_damaging(0.762) TCGA-98-8022-01 1 152083916 152083916 C G TCHH Missense_Mutation p.E593Q 0.04 unknown(0) TCGA-98-8022-01 1 152749106 152749106 C T LCE1F Missense_Mutation p.R87C 0.31 deleterious_low_confidence(0) unknown(0) TCGA-98-8022-01 1 154179851 154179851 G A C1orf43 3'UTR 0.24 TCGA-98-8022-01 1 155340651 155340651 C A ASH1L Missense_Mutation p.W2152C 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-98-8022-01 1 155755139 155755139 C G GON4L Missense_Mutation p.E592Q 0.04 deleterious(0.01) possibly_damaging(0.805) TCGA-98-8022-01 1 158815511 158815511 G T MNDA Missense_Mutation p.M235I 0.16 deleterious(0) possibly_damaging(0.786) TCGA-98-8022-01 1 165386447 165386447 G T RXRG Nonsense_Mutation p.Y151* 0.33 TCGA-98-8022-01 1 167384894 167384894 C T POU2F1 Silent p.V716V 0.19 TCGA-98-8022-01 1 169796974 169796974 A G C1orf112 Missense_Mutation p.T374A 0.33 tolerated(0.6) benign(0.004) TCGA-98-8022-01 1 173596263 173596263 C G ANKRD45 Missense_Mutation p.V178L 0.30 tolerated(0.11) benign(0.071) TCGA-98-8022-01 1 177247863 177247863 C A BRINP2 Missense_Mutation p.L393I 0.32 tolerated(0.19) probably_damaging(0.991) TCGA-98-8022-01 1 196971631 196971631 C A CFHR5 Nonsense_Mutation p.C389* 0.23 TCGA-98-8022-01 1 203155743 203155743 C T CHI3L1 Silent p.V3V 0.25 TCGA-98-8022-01 1 208062059 208062059 G A CD34 Missense_Mutation p.R314C 0.02 deleterious(0) probably_damaging(0.998) TCGA-98-8022-01 1 210761338 210761338 C T HHAT Silent p.G381G 0.05 TCGA-98-8022-01 1 226108946 226108946 C A RP4-559A3.7 Silent p.L179L 0.24 TCGA-98-8022-01 1 240976990 240976990 G C RGS7 Missense_Mutation p.P295R 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-98-8022-01 1 244724091 244724091 C T C1orf101 Missense_Mutation p.S384L 0.23 tolerated(0.25) benign(0.245) TCGA-98-8022-01 1 246811156 246811156 T G CNST Silent p.L551L 0.26 TCGA-98-8022-01 1 246921546 246921546 G A SCCPDH Missense_Mutation p.G195S 0.17 deleterious(0) possibly_damaging(0.787) TCGA-98-8022-01 1 247921087 247921087 G T OR1C1 Missense_Mutation p.L208I 0.18 tolerated(1) benign(0.002) TCGA-98-8022-01 1 248366505 248366505 G A OR2M3 Missense_Mutation p.V46I 0.22 tolerated(1) benign(0.007) TCGA-98-8022-01 1 248436892 248436892 A T OR2T33 Silent p.T75T 0.05 TCGA-98-8022-01 1 248437041 248437041 A T OR2T33 Missense_Mutation p.F26I 0.27 deleterious(0) probably_damaging(0.955) TCGA-98-8022-01 1 248844848 248844848 C T OR14I1 Missense_Mutation p.G253E 0.17 deleterious(0) probably_damaging(0.995) TCGA-98-8022-01 1 26691284 26691284 C T ZNF683 Silent p.E251E 0.34 TCGA-98-8022-01 1 32155423 32155423 C G COL16A1 Silent p.L513L 0.30 TCGA-98-8022-01 1 39321401 39321401 C A RRAGC Missense_Mutation p.G207V 0.29 deleterious(0.01) benign(0.366) TCGA-98-8022-01 1 43772547 43772548 - G TIE1 Frame_Shift_Ins p.D175Gfs*67 0.25 TCGA-98-8022-01 1 44482771 44482771 C A SLC6A9 Missense_Mutation p.R12L 0.24 tolerated_low_confidence(0.23) benign(0.002) TCGA-98-8022-01 1 46073245 46073245 G T NASP Missense_Mutation p.G221V 0.09 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-98-8022-01 1 46073249 46073249 G A NASP Silent p.P222P 0.09 TCGA-98-8022-01 1 55224499 55224499 G A PARS2 Silent p.I112I 0.07 TCGA-98-8022-01 1 75707740 75707740 T A SLC44A5 Missense_Mutation p.T160S 0.26 tolerated(0.82) benign(0.001) TCGA-98-8022-01 1 82432241 82432241 C G LPHN2 Missense_Mutation p.S749C 0.20 deleterious(0) probably_damaging(0.999) TCGA-98-8022-01 1 92185540 92185540 T C TGFBR3 Silent p.P441P 0.04 TCGA-98-8022-01 20 1616030 1616030 T C SIRPG Missense_Mutation p.R322G 0.32 deleterious(0) possibly_damaging(0.899) TCGA-98-8022-01 20 17339008 17339008 A C PCSK2 Missense_Mutation p.K107Q 0.05 tolerated(0.55) benign(0.002) TCGA-98-8022-01 20 20475893 20475893 G A RALGAPA2 Silent p.V1745V 0.04 TCGA-98-8022-01 20 30065655 30065655 C T REM1 Missense_Mutation p.T122M 0.26 tolerated(0.51) benign(0.038) TCGA-98-8022-01 20 3233282 3233282 A G C20orf194 Missense_Mutation p.I1157T 0.13 deleterious(0) probably_damaging(0.999) TCGA-98-8022-01 20 33330307 33330307 G C NCOA6 Silent p.L1251L 0.05 TCGA-98-8022-01 20 42194929 42194929 C A SGK2 5'UTR 0.25 TCGA-98-8022-01 20 42680115 42680115 C T TOX2 Missense_Mutation p.P194L 0.26 deleterious(0) probably_damaging(0.997) TCGA-98-8022-01 20 43836070 43836070 G A SEMG1 Silent p.K44K 0.31 TCGA-98-8022-01 20 44540035 44540035 G A PLTP Silent p.F19F 0.04 TCGA-98-8022-01 20 57042593 57042593 G A APCDD1L Silent p.L104L 0.22 TCGA-98-8022-01 20 61162170 61162170 C G C20orf166 Intron 0.33 TCGA-98-8022-01 20 61288142 61288142 C T SLCO4A1 Silent p.A112A 0.08 TCGA-98-8022-01 20 7976683 7976683 C A TMX4 Missense_Mutation p.G168V 0.10 tolerated(0.22) benign(0.118) TCGA-98-8022-01 21 11049547 11049547 C A BAGE2 RNA 0.07 TCGA-98-8022-01 21 46011798 46011798 C T KRTAP10-6 Missense_Mutation p.V190I 0.17 tolerated(0.12) unknown(0) TCGA-98-8022-01 22 23955848 23955848 C G C22orf43 Splice_Site p.X208_splice 0.12 TCGA-98-8022-01 22 31032960 31032960 G T SLC35E4 Missense_Mutation p.A175S 0.21 tolerated(0.54) probably_damaging(0.929) TCGA-98-8022-01 22 32302402 32302402 G A DEPDC5 Silent p.T1568T 0.05 TCGA-98-8022-01 22 36702049 36702049 C T MYH9 Missense_Mutation p.G696S 0.05 probably_damaging(1) TCGA-98-8022-01 22 39918596 39918596 A G ATF4 Missense_Mutation p.R349G 0.12 tolerated(0.08) benign(0.11) TCGA-98-8022-01 22 42172268 42172268 G T MEI1 Nonsense_Mutation p.G903* 0.26 TCGA-98-8022-01 22 42172269 42172269 G A MEI1 Missense_Mutation p.G903E 0.26 tolerated(0.81) benign(0.001) TCGA-98-8022-01 22 44083367 44083367 G A EFCAB6 Silent p.L376L 0.29 TCGA-98-8022-01 22 46807530 46807530 C A CELSR1 Missense_Mutation p.A1580S 0.20 tolerated(0.1) probably_damaging(0.928) TCGA-98-8022-01 2 105858559 105858559 A T GPR45 Missense_Mutation p.M82L 0.18 tolerated(0.52) benign(0.007) TCGA-98-8022-01 2 116548716 116548716 G A DPP10 Missense_Mutation p.G535R 0.07 deleterious(0.01) benign(0.001) TCGA-98-8022-01 2 132277731 132277731 A G AC093838.4 RNA 0.15 TCGA-98-8022-01 2 145156009 145156009 G A ZEB2 Silent p.T915T 0.20 TCGA-98-8022-01 2 145162473 145162473 A T ZEB2 Silent p.I174I 0.30 TCGA-98-8022-01 2 172314502 172314502 G T DCAF17 Missense_Mutation p.A217S 0.27 deleterious(0.02) probably_damaging(0.998) TCGA-98-8022-01 2 179417390 179417390 G T TTN Missense_Mutation p.H30079Q 0.38 TCGA-98-8022-01 2 180311325 180311325 G C ZNF385B Silent p.A281A 0.10 TCGA-98-8022-01 2 185803012 185803012 G A ZNF804A Silent p.Q963Q 0.04 TCGA-98-8022-01 2 1906986 1906986 T A MYT1L Missense_Mutation p.N631I 0.12 deleterious(0) probably_damaging(1) TCGA-98-8022-01 2 198643760 198643760 A - BOLL Frame_Shift_Del p.S66Pfs*6 0.10 TCGA-98-8022-01 2 209358189 209358189 T C PTH2R Silent p.P486P 0.17 TCGA-98-8022-01 2 210518041 210518041 A G MAP2 Silent p.P49P 0.17 TCGA-98-8022-01 2 210569345 210569345 G T MAP2 Intron 0.04 TCGA-98-8022-01 2 228884710 228884710 G A SPHKAP Missense_Mutation p.P287L 0.16 tolerated(0.95) benign(0) TCGA-98-8022-01 2 233710550 233710550 G T GIGYF2 Missense_Mutation p.W1159C 0.15 unknown(0) TCGA-98-8022-01 2 234638601 234638601 G - UGT1A3 Frame_Shift_Del p.G278Afs*89 0.21 TCGA-98-8022-01 2 239009119 239009119 G A ESPNL Missense_Mutation p.R20Q 0.14 tolerated(1) benign(0.013) TCGA-98-8022-01 2 24011382 24011382 C A ATAD2B Missense_Mutation p.A926S 0.05 tolerated(0.12) benign(0.014) TCGA-98-8022-01 2 242047584 242047584 T C PASK Missense_Mutation p.K1229R 0.16 deleterious(0.01) benign(0.021) TCGA-98-8022-01 2 25498408 25498408 T C DNMT3A Silent p.K151K 0.16 TCGA-98-8022-01 2 27276900 27276900 T C AGBL5 Missense_Mutation p.F175S 0.03 deleterious(0.01) possibly_damaging(0.519) TCGA-98-8022-01 2 27802114 27802114 T C C2orf16 Missense_Mutation p.M892T 0.19 deleterious(0) probably_damaging(0.997) TCGA-98-8022-01 2 61006891 61006891 T C PAPOLG Missense_Mutation p.F272L 0.05 deleterious(0) probably_damaging(0.998) TCGA-98-8022-01 2 68413643 68413643 T C PPP3R1 Missense_Mutation p.D141G 0.09 deleterious(0.03) probably_damaging(0.996) TCGA-98-8022-01 2 80831282 80831282 T G CTNNA2 Nonsense_Mutation p.L758* 0.16 TCGA-98-8022-01 2 85839038 85839038 C T C2orf68 Missense_Mutation p.G24S 0.21 deleterious(0.05) possibly_damaging(0.861) TCGA-98-8022-01 2 87085213 87085213 G T CD8B Missense_Mutation p.L124M 0.03 deleterious(0.02) possibly_damaging(0.904) TCGA-98-8022-01 2 90154113 90154113 T A IGKV3D-15 Missense_Mutation p.L67H 0.10 deleterious(0) probably_damaging(0.99) TCGA-98-8022-01 2 97911280 97911280 G A ANKRD36 Silent p.E1652E 0.17 TCGA-98-8022-01 3 101568527 101568527 G T NFKBIZ Missense_Mutation p.A19S 0.37 tolerated_low_confidence(0.05) benign(0.088) TCGA-98-8022-01 3 113375406 113375406 C G KIAA2018 Missense_Mutation p.R1708T 0.04 probably_damaging(0.998) TCGA-98-8022-01 3 113507579 113507579 A G ATP6V1A Missense_Mutation p.T246A 0.37 tolerated(0.72) benign(0.009) TCGA-98-8022-01 3 114070433 114070433 C A ZBTB20 Silent p.R164R 0.33 TCGA-98-8022-01 3 122880293 122880293 C T PDIA5 Silent p.S490S 0.28 TCGA-98-8022-01 3 130287343 130287343 G C COL6A6 Missense_Mutation p.E766Q 0.08 tolerated(0.08) benign(0.153) TCGA-98-8022-01 3 147131196 147131196 A G ZIC1 Missense_Mutation p.Y401C 0.04 deleterious(0.03) possibly_damaging(0.753) TCGA-98-8022-01 3 155198913 155198913 C T PLCH1 Silent p.T1642T 0.05 TCGA-98-8022-01 3 183961619 183961619 G A ALG3 Missense_Mutation p.L298F 0.41 deleterious(0.03) benign(0.35) TCGA-98-8022-01 3 191179226 191179226 G C PYDC2 Missense_Mutation p.C92S 0.20 tolerated_low_confidence(0.46) benign(0) TCGA-98-8022-01 3 195516163 195516163 G T MUC4 Nonsense_Mutation p.S763* 0.07 TCGA-98-8022-01 3 195517390 195517390 G C MUC4 Missense_Mutation p.S354C 0.03 unknown(0) TCGA-98-8022-01 3 38950583 38950583 C A SCN11A Missense_Mutation p.A402S 0.36 tolerated(0.09) benign(0.042) TCGA-98-8022-01 3 39178770 39178770 C T TTC21A Silent p.S1121S 0.07 TCGA-98-8022-01 3 52850958 52850958 G A ITIH4 Missense_Mutation p.R805W 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-98-8022-01 4 103822388 103822388 C A SLC9B1 Missense_Mutation p.L478F 0.08 deleterious(0) probably_damaging(0.996) TCGA-98-8022-01 4 16168276 16168276 T C TAPT1 Missense_Mutation p.N485S 0.31 tolerated(1) benign(0.001) TCGA-98-8022-01 4 187541907 187541907 T A FAT1 Nonsense_Mutation p.R1945* 0.48 TCGA-98-8022-01 4 2172860 2172860 G A POLN Missense_Mutation p.R475W 0.06 deleterious(0) possibly_damaging(0.802) TCGA-98-8022-01 4 44449648 44449648 G T KCTD8 Missense_Mutation p.T298N 0.12 deleterious(0) benign(0.07) TCGA-98-8022-01 4 47560019 47560019 G T ATP10D Silent p.L721L 0.34 TCGA-98-8022-01 4 86921632 86921632 C A ARHGAP24 Missense_Mutation p.S668R 0.12 tolerated(0.84) possibly_damaging(0.703) TCGA-98-8022-01 5 10423899 10423899 T G MARCH6 Missense_Mutation p.M779R 0.19 deleterious(0) possibly_damaging(0.707) TCGA-98-8022-01 5 139921828 139921828 G T ANKHD1 Missense_Mutation p.K2547N 0.44 benign(0.403) TCGA-98-8022-01 5 140188745 140188745 C T PCDHA4 Missense_Mutation p.A658V 0.05 tolerated_low_confidence(0.11) benign(0.036) TCGA-98-8022-01 5 147856266 147856267 - G HTR4 3'Flank 0.31 TCGA-98-8022-01 5 24488083 24488083 G C CDH10 Missense_Mutation p.L686V 0.20 tolerated(0.5) benign(0.123) TCGA-98-8022-01 5 33527384 33527384 G A ADAMTS12 Missense_Mutation p.A1565V 0.17 tolerated(0.27) benign(0.005) TCGA-98-8022-01 5 35955903 35955903 C T UGT3A1 Missense_Mutation p.R380H 0.30 tolerated(0.43) benign(0.001) TCGA-98-8022-01 5 75950796 75950796 C T IQGAP2 Missense_Mutation p.A763V 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-98-8022-01 5 86659321 86659321 G - RASA1 Frame_Shift_Del 0.14 TCGA-98-8022-01 6 100897501 100897501 G A SIM1 Silent p.T141T 0.15 TCGA-98-8022-01 6 116832814 116832814 C T FAM26E 5'UTR 0.12 TCGA-98-8022-01 6 116833315 116833315 A T FAM26E Missense_Mutation p.E152D 0.39 tolerated(0.21) possibly_damaging(0.828) TCGA-98-8022-01 6 117053520 117053520 G T KPNA5 3'UTR 0.25 TCGA-98-8022-01 6 117846563 117846563 A G DCBLD1 Missense_Mutation p.D184G 0.31 deleterious(0.03) possibly_damaging(0.728) TCGA-98-8022-01 6 129486785 129486785 A - LAMA2 Frame_Shift_Del p.V425Sfs*27 0.11 TCGA-98-8022-01 6 133110942 133110942 G A SLC18B1 Missense_Mutation p.A105V 0.26 tolerated(0.06) possibly_damaging(0.597) TCGA-98-8022-01 6 139488014 139488014 C T HECA Missense_Mutation p.R289C 0.09 deleterious(0.02) probably_damaging(0.997) TCGA-98-8022-01 6 146264439 146264439 T C SHPRH Missense_Mutation p.E693G 0.16 deleterious(0.04) benign(0.068) TCGA-98-8022-01 6 26032282 26032282 G C HIST1H3B Missense_Mutation p.R3G 0.07 deleterious_low_confidence(0.04) benign(0.029) TCGA-98-8022-01 6 29365123 29365123 A G OR12D2 Missense_Mutation p.Y216C 0.26 deleterious(0.01) probably_damaging(0.96) TCGA-98-8022-01 6 30691136 30691136 C T TUBB Silent p.N99N 0.13 TCGA-98-8022-01 6 33261701 33261701 G A RGL2 Intron 0.34 TCGA-98-8022-01 6 36789920 36789920 G A CPNE5 Silent p.T51T 0.16 TCGA-98-8022-01 6 4077594 4077594 G A FAM217A Nonsense_Mutation p.Q19* 0.06 TCGA-98-8022-01 6 41564957 41564957 G T FOXP4 Nonsense_Mutation p.G568* 0.18 TCGA-98-8022-01 6 41564958 41564958 G T FOXP4 Missense_Mutation p.G568V 0.18 deleterious(0.02) possibly_damaging(0.754) TCGA-98-8022-01 6 52054079 52054079 C G IL17A Missense_Mutation p.H153D 0.41 deleterious(0.03) possibly_damaging(0.49) TCGA-98-8022-01 6 52344557 52344557 C G EFHC1 Missense_Mutation p.R538G 0.09 tolerated(0.15) benign(0.001) TCGA-98-8022-01 6 7411581 7411581 A G RIOK1 Missense_Mutation p.Y429C 0.37 deleterious(0) probably_damaging(0.996) TCGA-98-8022-01 6 76751844 76751844 C G IMPG1 Splice_Site p.X23_splice 0.06 TCGA-98-8022-01 6 7891863 7891863 C G TXNDC5 Missense_Mutation p.K241N 0.09 deleterious(0.02) probably_damaging(0.988) TCGA-98-8022-01 6 90572379 90572379 C T CASP8AP2 RNA 0.35 TCGA-98-8022-01 7 107732175 107732175 C T LAMB4 Missense_Mutation p.G533S 0.10 tolerated(0.18) possibly_damaging(0.856) TCGA-98-8022-01 7 113520046 113520046 A C PPP1R3A Silent p.T367T 0.39 TCGA-98-8022-01 7 120740126 120740126 A G CPED1 Missense_Mutation p.K299R 0.32 tolerated(0.12) benign(0.002) TCGA-98-8022-01 7 128412659 128412659 C T OPN1SW Missense_Mutation p.D328N 0.10 tolerated(0.12) benign(0.003) TCGA-98-8022-01 7 129951915 129951915 C T CPA4 Missense_Mutation p.S344F 0.06 deleterious(0) probably_damaging(0.97) TCGA-98-8022-01 7 137206609 137206609 T C DGKI Intron 0.21 TCGA-98-8022-01 7 142334835 142334835 C T TRBV20-1 Missense_Mutation p.A86V 0.34 deleterious(0) benign(0.001) TCGA-98-8022-01 7 155499609 155499609 G A RBM33 Silent p.Q265Q 0.33 TCGA-98-8022-01 7 158542339 158542339 C G ESYT2 Splice_Site p.X546_splice 0.23 TCGA-98-8022-01 7 18631207 18631207 G C HDAC9 Missense_Mutation p.D162H 0.20 tolerated(0.06) probably_damaging(0.938) TCGA-98-8022-01 7 21640680 21640680 G C DNAH11 Missense_Mutation p.R1103T 0.19 possibly_damaging(0.549) TCGA-98-8022-01 7 48284205 48284205 T A ABCA13 Missense_Mutation p.L432Q 0.17 possibly_damaging(0.903) TCGA-98-8022-01 7 99818445 99818445 T C PVRIG Splice_Site p.X219_splice 0.13 TCGA-98-8022-01 8 110509205 110509205 G A PKHD1L1 Missense_Mutation p.G3462E 0.26 deleterious(0) probably_damaging(0.999) TCGA-98-8022-01 8 110631208 110631208 C G SYBU Missense_Mutation p.G97A 0.05 tolerated(0.09) possibly_damaging(0.621) TCGA-98-8022-01 8 116631877 116631877 G C TRPS1 Missense_Mutation p.Q150E 0.05 deleterious_low_confidence(0.01) benign(0.004) TCGA-98-8022-01 8 145101568 145101568 T A SPATC1 Missense_Mutation p.L496Q 0.08 tolerated(0.1) probably_damaging(0.999) TCGA-98-8022-01 8 38067587 38067587 G A BAG4 Missense_Mutation p.S317N 0.11 tolerated(0.26) benign(0.005) TCGA-98-8022-01 8 42587253 42587253 C T CHRNB3 Missense_Mutation p.S268F 0.11 deleterious(0) probably_damaging(1) TCGA-98-8022-01 8 82752231 82752231 G C SNX16 5'UTR 0.03 TCGA-98-8022-01 8 96275974 96275974 C G C8orf37 Missense_Mutation p.D62H 0.06 deleterious(0) possibly_damaging(0.864) TCGA-98-8022-01 9 100249529 100249529 C G TDRD7 Missense_Mutation p.H997Q 0.22 deleterious(0) probably_damaging(0.995) TCGA-98-8022-01 9 130943054 130943054 C T CIZ1 Missense_Mutation p.D210N 0.54 deleterious(0) possibly_damaging(0.859) TCGA-98-8022-01 9 139391968 139391968 C A NOTCH1 Nonsense_Mutation p.E2075* 0.49 TCGA-98-8022-01 9 14824052 14824052 T A FREM1 Missense_Mutation p.T714S 0.15 tolerated(0.53) benign(0.001) TCGA-98-8022-01 9 2047369 2047369 G C SMARCA2 Missense_Mutation p.A311P 0.28 possibly_damaging(0.665) TCGA-98-8022-01 9 43630560 43630563 AAGA T SPATA31A6 In_Frame_Del p.S47_Y48delinsN 0.21 TCGA-98-8022-01 9 4618876 4618876 T A SPATA6L Silent p.A207A 0.47 TCGA-98-8022-01 9 6014089 6014089 C G RANBP6 Missense_Mutation p.E507Q 0.05 tolerated(0.11) benign(0.403) TCGA-98-8022-01 9 6990505 6990505 G T KDM4C Missense_Mutation p.Q589H 0.43 deleterious(0) possibly_damaging(0.606) TCGA-98-8022-01 X 110463619 110463619 A T PAK3 Missense_Mutation p.S563C 0.38 deleterious(0.01) probably_damaging(1) TCGA-98-8022-01 X 117527225 117527225 G C WDR44 Missense_Mutation p.D273H 0.25 tolerated(0.06) possibly_damaging(0.592) TCGA-98-8022-01 X 117575510 117575510 C G WDR44 Missense_Mutation p.F718L 0.04 tolerated(0.07) possibly_damaging(0.766) TCGA-98-8022-01 X 139866349 139866349 C T CDR1 Silent p.T61T 0.34 TCGA-98-8022-01 X 144909296 144909296 T C TMEM257 Missense_Mutation p.L34P 0.22 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-98-8022-01 X 34150224 34150224 A T FAM47A Missense_Mutation p.F58I 0.07 deleterious(0) probably_damaging(0.943) TCGA-98-8022-01 X 37028497 37028497 G T FAM47C Nonsense_Mutation p.E672* 0.44 TCGA-98-8022-01 X 63410939 63410939 C A AMER1 Missense_Mutation p.R743M 0.19 deleterious(0.02) possibly_damaging(0.646) TCGA-98-8023-01 10 113920590 113920590 C A GPAM Missense_Mutation p.V511L 0.11 tolerated(0.65) benign(0.004) TCGA-98-8023-01 10 114063045 114063045 T C TECTB Missense_Mutation p.M322T 0.20 tolerated_low_confidence(0.33) benign(0.002) TCGA-98-8023-01 10 45642858 45642858 A G RP11-445N18.7 RNA 0.25 TCGA-98-8023-01 10 5011016 5011016 C T AKR1C1 Silent p.A150A 0.11 TCGA-98-8023-01 11 120099733 120099733 G T OAF Missense_Mutation p.R235L 0.31 deleterious(0) possibly_damaging(0.827) TCGA-98-8023-01 11 14156972 14156972 C A RNA5SP332 3'Flank 0.22 TCGA-98-8023-01 11 50003376 50003376 C G OR4C12 Missense_Mutation p.R221T 0.09 tolerated_low_confidence(0.39) benign(0.079) TCGA-98-8023-01 11 5275521 5275521 C T HBG2 Splice_Site p.X105_splice 0.20 TCGA-98-8023-01 11 5364582 5364582 T C OR51B5 Missense_Mutation p.Y58C 0.17 deleterious(0) probably_damaging(0.997) TCGA-98-8023-01 11 55579620 55579620 G A OR5L1 Silent p.L226L 0.19 TCGA-98-8023-01 11 55681329 55681329 G T OR5W2 Missense_Mutation p.H244N 0.16 deleterious(0) probably_damaging(0.997) TCGA-98-8023-01 11 55797897 55797897 G T OR5AS1 Translation_Start_Site p.M1? 0.15 deleterious(0.01) benign(0.15) TCGA-98-8023-01 11 55873193 55873193 C A OR8H2 Silent p.I225I 0.06 TCGA-98-8023-01 11 60885691 60885691 C A CD5 Missense_Mutation p.Q47K 0.11 tolerated(0.65) benign(0.12) TCGA-98-8023-01 11 71927954 71927954 A G FOLR2 5'UTR 0.28 TCGA-98-8023-01 11 7335093 7335093 T C SYT9 Missense_Mutation p.V322A 0.30 deleterious(0.01) probably_damaging(0.987) TCGA-98-8023-01 11 83344270 83344270 G C DLG2 Missense_Mutation p.R642G 0.11 deleterious(0.01) possibly_damaging(0.603) TCGA-98-8023-01 11 94730723 94730723 T C KDM4D Missense_Mutation p.Y63H 0.24 deleterious(0) probably_damaging(0.997) TCGA-98-8023-01 12 110781162 110781162 T A ATP2A2 Missense_Mutation p.I815N 0.28 deleterious(0) probably_damaging(0.998) TCGA-98-8023-01 12 11174430 11174430 T A TAS2R19 Silent p.T247T 0.33 TCGA-98-8023-01 12 117768831 117768831 A G NOS1 Missense_Mutation p.V15A 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.593) TCGA-98-8023-01 12 124362339 124362339 A G DNAH10 Silent p.A2634A 0.19 TCGA-98-8023-01 12 130841639 130841639 A T PIWIL1 Missense_Mutation p.R527S 0.16 tolerated(0.45) benign(0) TCGA-98-8023-01 12 13220100 13220100 G C KIAA1467 Missense_Mutation p.A338P 0.14 deleterious(0) probably_damaging(0.997) TCGA-98-8023-01 12 21327509 21327509 A G SLCO1B1 Splice_Site p.X76_splice 0.14 TCGA-98-8023-01 12 25357154 25357154 T C LYRM5 Missense_Mutation p.F61L 0.15 deleterious(0.01) possibly_damaging(0.611) TCGA-98-8023-01 12 2973612 2973612 A G FOXM1 Silent p.P380P 0.16 TCGA-98-8023-01 12 32908203 32908203 C T YARS2 Silent p.Q202Q 0.05 TCGA-98-8023-01 12 5154497 5154497 C - KCNA5 Frame_Shift_Del p.L396Wfs*36 0.11 TCGA-98-8023-01 12 56648366 56648366 G A ANKRD52 Missense_Mutation p.A230V 0.11 tolerated(1) benign(0.024) TCGA-98-8023-01 12 63544085 63544085 T C AVPR1A Missense_Mutation p.S178G 0.14 deleterious(0.01) probably_damaging(0.919) TCGA-98-8023-01 12 6756098 6756098 C T ACRBP Missense_Mutation p.E42K 0.06 deleterious(0) probably_damaging(0.998) TCGA-98-8023-01 12 67688883 67688883 A T CAND1 Missense_Mutation p.E146D 0.21 tolerated(0.18) benign(0.017) TCGA-98-8023-01 13 29600623 29600623 G A MTUS2 Silent p.G606G 0.27 TCGA-98-8023-01 13 33704260 33704260 C A STARD13 Missense_Mutation p.S185I 0.43 deleterious(0.05) probably_damaging(0.999) TCGA-98-8023-01 13 70535549 70535549 A G KLHL1 Silent p.Y236Y 0.31 TCGA-98-8023-01 13 76429466 76429467 GA - LMO7 Intron 0.20 TCGA-98-8023-01 13 96601627 96601627 C G UGGT2 Missense_Mutation p.G473R 0.33 deleterious(0) benign(0.124) TCGA-98-8023-01 14 22386839 22386839 C T TRAV13-2 Missense_Mutation p.T83I 0.13 tolerated(0.2) benign(0.331) TCGA-98-8023-01 14 23502640 23502640 G A PSMB5 Nonsense_Mutation p.Q148* 0.08 TCGA-98-8023-01 14 61180445 61180445 A G SIX4 Silent p.L676L 0.25 TCGA-98-8023-01 14 93305710 93305710 G T GOLGA5 Splice_Site p.X706_splice 0.13 TCGA-98-8023-01 15 22369202 22369202 G A OR4M2 Silent p.V209V 0.09 TCGA-98-8023-01 15 22869950 22869950 G C TUBGCP5 Missense_Mutation p.L958F 0.26 deleterious(0) probably_damaging(0.935) TCGA-98-8023-01 15 33916156 33916156 G T RYR3 Missense_Mutation p.D836Y 0.23 probably_damaging(0.994) TCGA-98-8023-01 15 35085728 35085728 C A ACTC1 Missense_Mutation p.D58Y 0.20 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-98-8023-01 15 63019364 63019364 G T TLN2 Missense_Mutation p.A1112S 0.30 tolerated(0.33) benign(0.013) TCGA-98-8023-01 15 74708324 74708324 C T SEMA7A Silent p.G268G 0.14 TCGA-98-8023-01 15 89862177 89862177 C T POLG Silent p.S1086S 0.19 TCGA-98-8023-01 15 92988053 92988053 C A ST8SIA2 Silent p.R246R 0.15 TCGA-98-8023-01 16 1397753 1397753 G T BAIAP3 Nonsense_Mutation p.E1021* 0.19 TCGA-98-8023-01 16 31012287 31012287 A C STX1B Missense_Mutation p.I81S 0.25 deleterious(0) probably_damaging(0.98) TCGA-98-8023-01 16 3140414 3140414 G A ZSCAN10 Missense_Mutation p.P286S 0.25 tolerated(1) benign(0.001) TCGA-98-8023-01 16 4016197 4016197 C A ADCY9 Missense_Mutation p.R1214L 0.20 tolerated(0.28) benign(0.012) TCGA-98-8023-01 16 53514510 53514510 A T RBL2 Silent p.S971S 0.27 TCGA-98-8023-01 16 76569463 76569463 G T CNTNAP4 Missense_Mutation p.R853I 0.26 deleterious(0) probably_damaging(0.913) TCGA-98-8023-01 17 27959278 27959278 A G SSH2 Silent p.N951N 0.12 TCGA-98-8023-01 17 30348689 30348689 T G LRRC37B Missense_Mutation p.L175R 0.25 deleterious(0) possibly_damaging(0.902) TCGA-98-8023-01 17 43215124 43215124 C T ACBD4 Nonsense_Mutation p.Q180* 0.13 TCGA-98-8023-01 17 43317929 43317929 G T FMNL1 Missense_Mutation p.E389D 0.23 tolerated(0.06) unknown(0) TCGA-98-8023-01 17 55075810 55075810 C T SCPEP1 Silent p.G315G 0.15 TCGA-98-8023-01 17 56565286 56565286 C A HSF5 Missense_Mutation p.R117L 0.26 tolerated(0.09) benign(0.017) TCGA-98-8023-01 17 61613156 61613156 C T KCNH6 Missense_Mutation p.L410F 0.21 deleterious(0) probably_damaging(0.999) TCGA-98-8023-01 17 7365445 7365445 T A ZBTB4 Silent p.L952L 0.36 TCGA-98-8023-01 17 7577120 7577120 C A TP53 Missense_Mutation p.R273L 0.26 deleterious(0) probably_damaging(0.993) TCGA-98-8023-01 18 25565525 25565525 T C CDH2 Missense_Mutation p.I648V 0.10 tolerated(1) benign(0.007) TCGA-98-8023-01 18 3452173 3452173 T C TGIF1 Missense_Mutation p.S66P 0.23 deleterious_low_confidence(0.02) benign(0) TCGA-98-8023-01 18 34854372 34854372 C T CELF4 Missense_Mutation p.E235K 0.17 deleterious(0) possibly_damaging(0.688) TCGA-98-8023-01 19 14910828 14910828 C T OR7C1 Missense_Mutation p.G41R 0.24 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-98-8023-01 19 30503230 30503230 G T URI1 Missense_Mutation p.R406L 0.37 deleterious(0) possibly_damaging(0.895) TCGA-98-8023-01 19 39589258 39589258 C T PAPL Silent p.H94H 0.32 TCGA-98-8023-01 19 46195236 46195236 C T SNRPD2 5'UTR 0.29 TCGA-98-8023-01 19 49686141 49686141 G A TRPM4 Missense_Mutation p.A524T 0.17 tolerated(0.73) benign(0.002) TCGA-98-8023-01 19 51883853 51883853 G T LIM2 Silent p.V164V 0.08 TCGA-98-8023-01 19 52619687 52619687 C A ZNF616 Missense_Mutation p.D244Y 0.29 deleterious(0.03) possibly_damaging(0.871) TCGA-98-8023-01 19 53473259 53473259 C T ZNF702P RNA 0.16 TCGA-98-8023-01 19 57328939 57328939 T - PEG3 Frame_Shift_Del p.T291Lfs*23 0.11 TCGA-98-8023-01 19 57329968 57329968 C T PEG3 Missense_Mutation p.V258M 0.35 deleterious(0.03) possibly_damaging(0.64) TCGA-98-8023-01 19 58084405 58084405 C A ZNF416 Silent p.R289R 0.34 TCGA-98-8023-01 1 110168962 110168962 G C AMPD2 Missense_Mutation p.E202D 0.23 tolerated(0.22) benign(0.006) TCGA-98-8023-01 1 114454492 114454492 G T DCLRE1B Silent p.T426T 0.26 TCGA-98-8023-01 1 115488959 115488959 A T SYCP1 Missense_Mutation p.Y735F 0.24 tolerated(0.2) benign(0.038) TCGA-98-8023-01 1 144879413 144879413 C T PDE4DIP Missense_Mutation p.G1346E 0.06 tolerated(0.23) probably_damaging(0.996) TCGA-98-8023-01 1 152282596 152282596 C A FLG Missense_Mutation p.R1589L 0.13 possibly_damaging(0.569) TCGA-98-8023-01 1 176661350 176661350 C T PAPPA2 Silent p.S840S 0.10 TCGA-98-8023-01 1 190067482 190067482 C T BRINP3 Missense_Mutation p.R656Q 0.30 tolerated(0.18) benign(0.005) TCGA-98-8023-01 1 190067934 190067934 G T BRINP3 Missense_Mutation p.D505E 0.21 deleterious(0) probably_damaging(0.991) TCGA-98-8023-01 1 200958013 200958013 C G KIF21B Missense_Mutation p.G1060A 0.27 tolerated(0.3) probably_damaging(0.997) TCGA-98-8023-01 1 200958014 200958014 C A KIF21B Missense_Mutation p.G1060C 0.27 deleterious(0) probably_damaging(1) TCGA-98-8023-01 1 203024616 203024616 G A PPFIA4 Missense_Mutation p.R123H 0.16 deleterious(0) possibly_damaging(0.902) TCGA-98-8023-01 1 203186955 203186955 C T CHIT1 Missense_Mutation p.M356I 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-98-8023-01 1 203192363 203192363 C T CHIT1 Missense_Mutation p.E169K 0.27 deleterious(0.01) probably_damaging(1) TCGA-98-8023-01 1 204412587 204412587 T C PIK3C2B Silent p.K1002K 0.10 TCGA-98-8023-01 1 216251484 216251484 C T USH2A Missense_Mutation p.G1840E 0.10 probably_damaging(1) TCGA-98-8023-01 1 216405436 216405436 C A USH2A Missense_Mutation p.C951F 0.10 probably_damaging(1) TCGA-98-8023-01 1 216419988 216419988 G A USH2A Silent p.I916I 0.15 TCGA-98-8023-01 1 22073618 22073618 C A USP48 Silent p.L311L 0.06 TCGA-98-8023-01 1 22073619 22073619 A G USP48 Missense_Mutation p.L311P 0.06 deleterious(0) probably_damaging(0.979) TCGA-98-8023-01 1 227219150 227219150 C A CDC42BPA Missense_Mutation p.E1173D 0.12 tolerated(0.1) benign(0.386) TCGA-98-8023-01 1 2305916 2305916 G A MORN1 Silent p.I206I 0.24 TCGA-98-8023-01 1 237947798 237947798 G T RYR2 Missense_Mutation p.K4262N 0.19 possibly_damaging(0.722) TCGA-98-8023-01 1 237948119 237948119 G T RYR2 Silent p.L4369L 0.19 TCGA-98-8023-01 1 240370721 240370721 T C FMN2 Missense_Mutation p.M870T 0.23 unknown(0) TCGA-98-8023-01 1 247587747 247587747 C T NLRP3 Silent p.S334S 0.06 TCGA-98-8023-01 1 248201671 248201671 C - OR2L2 Frame_Shift_Del p.L35* 0.15 TCGA-98-8023-01 1 248202173 248202173 A T OR2L2 Missense_Mutation p.S202C 0.12 tolerated(0.35) benign(0.013) TCGA-98-8023-01 1 39880030 39880030 A C KIAA0754 Missense_Mutation p.T1229P 0.41 unknown(0) TCGA-98-8023-01 1 60359439 60359439 G C CYP2J2 Missense_Mutation p.L465V 0.26 deleterious(0.01) probably_damaging(0.924) TCGA-98-8023-01 1 75740652 75740652 G T SLC44A5 Missense_Mutation p.T84N 0.55 deleterious(0.01) probably_damaging(0.938) TCGA-98-8023-01 20 18131525 18131525 A T CSRP2BP Missense_Mutation p.R147W 0.07 deleterious(0) probably_damaging(0.997) TCGA-98-8023-01 20 30584778 30584778 G A XKR7 Missense_Mutation p.V420I 0.13 tolerated(0.09) benign(0.105) TCGA-98-8023-01 20 33874870 33874870 C T FAM83C Missense_Mutation p.G571D 0.18 tolerated_low_confidence(0.09) benign(0.037) TCGA-98-8023-01 20 33879972 33879972 G A FAM83C Missense_Mutation p.R46W 0.27 deleterious(0) probably_damaging(1) TCGA-98-8023-01 20 37518258 37518258 A G PPP1R16B Missense_Mutation p.K91E 0.22 deleterious(0.01) benign(0.345) TCGA-98-8023-01 20 40709468 40709468 G T PTPRT 3'UTR 0.19 TCGA-98-8023-01 20 50051780 50051780 G T NFATC2 Nonsense_Mutation p.Y659* 0.11 TCGA-98-8023-01 20 56090740 56090740 G T CTCFL Intron 0.13 TCGA-98-8023-01 20 8608982 8608982 G C PLCB1 Silent p.G96G 0.05 TCGA-98-8023-01 21 19628826 19628826 G T CHODL Missense_Mutation p.G27V 0.33 deleterious(0.04) benign(0.194) TCGA-98-8023-01 21 27327953 27327953 C A APP Missense_Mutation p.Q525H 0.22 deleterious(0.02) probably_damaging(0.984) TCGA-98-8023-01 21 31768675 31768675 C T KRTAP13-1 Missense_Mutation p.P91S 0.10 deleterious(0.05) possibly_damaging(0.764) TCGA-98-8023-01 21 45725749 45725749 G A PFKL Intron 0.28 TCGA-98-8023-01 22 21150449 21150449 C A PI4KA Missense_Mutation p.K754N 0.21 tolerated(0.36) benign(0.248) TCGA-98-8023-01 22 31664131 31664131 A C LIMK2 Missense_Mutation p.D400A 0.24 deleterious(0.03) benign(0.115) TCGA-98-8023-01 22 50728396 50728396 G T PLXNB2 Nonsense_Mutation p.Y206* 0.36 TCGA-98-8023-01 2 113785609 113785609 A G IL36B Intron 0.16 TCGA-98-8023-01 2 125284976 125284976 A T CNTNAP5 Missense_Mutation p.Q530L 0.10 deleterious(0.01) probably_damaging(0.978) TCGA-98-8023-01 2 128382951 128382951 G A MYO7B Silent p.E1326E 0.31 TCGA-98-8023-01 2 1653080 1653080 G A PXDN Silent p.F824F 0.07 TCGA-98-8023-01 2 167168011 167168011 T G SCN9A Missense_Mutation p.K86Q 0.18 deleterious(0.01) benign(0.163) TCGA-98-8023-01 2 171853247 171853247 T C TLK1 Silent p.Q680Q 0.25 TCGA-98-8023-01 2 175613520 175613520 T C CHRNA1 Missense_Mutation p.M369V 0.33 deleterious(0) benign(0.217) TCGA-98-8023-01 2 179475733 179475733 A T TTN Missense_Mutation p.N17041K 0.09 TCGA-98-8023-01 2 179640482 179640482 C A TTN Nonsense_Mutation p.E2037* 0.05 TCGA-98-8023-01 2 200298119 200298119 C G SATB2 Silent p.L96L 0.23 TCGA-98-8023-01 2 207621723 207621723 C T MDH1B Missense_Mutation p.M104I 0.12 deleterious(0.02) possibly_damaging(0.465) TCGA-98-8023-01 2 219029011 219029011 G T CXCR1 Silent p.I308I 0.13 TCGA-98-8023-01 2 230272008 230272008 C G DNER Missense_Mutation p.G555R 0.11 tolerated(0.09) possibly_damaging(0.534) TCGA-98-8023-01 2 233709116 233709116 G C GIGYF2 Missense_Mutation p.W1067S 0.19 unknown(0) TCGA-98-8023-01 2 234591100 234591100 T G UGT1A7 Missense_Mutation p.F173V 0.13 deleterious(0.02) benign(0.089) TCGA-98-8023-01 2 32770742 32770742 C T BIRC6 Missense_Mutation p.L4209F 0.13 probably_damaging(0.997) TCGA-98-8023-01 2 33442699 33442699 C T LTBP1 Silent p.C594C 0.25 TCGA-98-8023-01 2 39983030 39983030 G A THUMPD2 Missense_Mutation p.P321L 0.32 deleterious(0) probably_damaging(1) TCGA-98-8023-01 2 48915903 48915903 G C LHCGR Missense_Mutation p.P345A 0.27 deleterious(0) probably_damaging(1) TCGA-98-8023-01 2 50847280 50847280 G T NRXN1 Nonsense_Mutation p.Y440* 0.15 TCGA-98-8023-01 2 55407721 55407721 T G CLHC1 Missense_Mutation p.I437L 0.18 tolerated(1) benign(0) TCGA-98-8023-01 2 71357813 71357813 G T MPHOSPH10 Missense_Mutation p.W6C 0.15 deleterious_low_confidence(0.04) benign(0.01) TCGA-98-8023-01 2 80101423 80101423 C A CTNNA2 Silent p.G269G 0.14 TCGA-98-8023-01 2 85097418 85097418 C T TRABD2A Silent p.R200R 0.14 TCGA-98-8023-01 2 89339884 89339884 C A IGKV1-12 Missense_Mutation p.G63V 0.13 deleterious(0) probably_damaging(0.925) TCGA-98-8023-01 3 13461589 13461589 C A NUP210 Silent p.T46T 0.25 TCGA-98-8023-01 3 167507104 167507104 G T SERPINI1 Missense_Mutation p.G63V 0.32 deleterious(0) probably_damaging(1) TCGA-98-8023-01 3 180359821 180359821 A T CCDC39 Missense_Mutation p.S612T 0.17 tolerated(0.19) benign(0.02) TCGA-98-8023-01 3 186272457 186272457 T A TBCCD1 Missense_Mutation p.N377I 0.25 deleterious(0) possibly_damaging(0.817) TCGA-98-8023-01 3 27349389 27349389 A G NEK10 Missense_Mutation p.L255P 0.26 deleterious(0) probably_damaging(0.998) TCGA-98-8023-01 3 36779080 36779080 C A DCLK3 Missense_Mutation p.E357D 0.30 tolerated(0.18) benign(0.026) TCGA-98-8023-01 3 47044147 47044147 G C NBEAL2 Missense_Mutation p.E1772Q 0.38 tolerated(0.06) benign(0.066) TCGA-98-8023-01 3 48509000 48509000 G T TREX1 3'UTR 0.30 TCGA-98-8023-01 3 49138804 49138804 T C QARS Missense_Mutation p.N287S 0.26 deleterious(0.05) probably_damaging(0.999) TCGA-98-8023-01 3 49846487 49846487 G A UBA7 Silent p.L757L 0.13 TCGA-98-8023-01 3 88205488 88205488 G A C3orf38 Silent p.L231L 0.30 TCGA-98-8023-01 3 97720485 97720485 C A GABRR3 RNA 0.31 TCGA-98-8023-01 4 100264153 100264155 AAC - ADH1C In_Frame_Del p.V209del 0.08 TCGA-98-8023-01 4 108603199 108603199 T A PAPSS1 Missense_Mutation p.Q214L 0.28 tolerated(0.07) benign(0.198) TCGA-98-8023-01 4 120987892 120987892 C A MAD2L1 5'UTR 0.18 TCGA-98-8023-01 4 129880846 129880846 C A SCLT1 Missense_Mutation p.C319F 0.26 tolerated(0.07) possibly_damaging(0.855) TCGA-98-8023-01 4 134072987 134072987 A G PCDH10 Missense_Mutation p.I564M 0.38 deleterious(0) possibly_damaging(0.85) TCGA-98-8023-01 4 155533207 155533207 G T FGG Silent p.I90I 0.30 TCGA-98-8023-01 4 183549995 183549995 C G TENM3 Missense_Mutation p.A314G 0.45 deleterious(0.01) benign(0.364) TCGA-98-8023-01 4 57181481 57181481 G C KIAA1211 Missense_Mutation p.G605R 0.10 deleterious(0) probably_damaging(0.979) TCGA-98-8023-01 4 77087448 77087448 C T SCARB2 Silent p.T398T 0.35 TCGA-98-8023-01 4 80328489 80328489 G T GK2 Missense_Mutation p.T289K 0.36 deleterious(0) probably_damaging(1) TCGA-98-8023-01 4 85738676 85738676 G A WDFY3 Missense_Mutation p.R586W 0.12 deleterious(0) probably_damaging(0.999) TCGA-98-8023-01 5 122181377 122181377 C A SNX24 Silent p.R17R 0.18 TCGA-98-8023-01 5 13817753 13817753 C T DNAH5 Missense_Mutation p.A2298T 0.16 possibly_damaging(0.787) TCGA-98-8023-01 5 138260293 138260293 C T CTNNA1 Silent p.G547G 0.38 TCGA-98-8023-01 5 140503638 140503638 C A PCDHB4 Silent p.T686T 0.26 TCGA-98-8023-01 5 140588906 140588906 C T PCDHB12 Missense_Mutation p.P143S 0.24 tolerated_low_confidence(0.64) benign(0.023) TCGA-98-8023-01 5 140626460 140626460 C A PCDHB15 Silent p.T438T 0.24 TCGA-98-8023-01 5 14756043 14756043 T C ANKH Missense_Mutation p.H148R 0.16 deleterious(0.02) probably_damaging(0.997) TCGA-98-8023-01 5 32058061 32058061 C A PDZD2 Silent p.P684P 0.09 TCGA-98-8023-01 5 40964899 40964899 A T C7 Silent p.G602G 0.14 TCGA-98-8023-01 6 100911240 100911240 C G SIM1 Silent p.S35S 0.32 TCGA-98-8023-01 6 127797427 127797427 T A SOGA3 Missense_Mutation p.T582S 0.33 tolerated(0.17) probably_damaging(0.968) TCGA-98-8023-01 6 130497027 130497027 C A SAMD3 Missense_Mutation p.A261S 0.31 tolerated(0.2) benign(0.039) TCGA-98-8023-01 6 132206128 132206128 G T ENPP1 Missense_Mutation p.G790V 0.37 deleterious(0.01) probably_damaging(0.994) TCGA-98-8023-01 6 133049937 133049937 T C VNN3 Silent p.Q160Q 0.36 TCGA-98-8023-01 6 160524835 160524835 C A IGF2R Nonsense_Mutation p.Y2351* 0.31 TCGA-98-8023-01 6 16146901 16146901 C G MYLIP Silent p.P419P 0.40 TCGA-98-8023-01 6 167753961 167753961 C A TTLL2 Missense_Mutation p.F191L 0.28 tolerated(0.07) probably_damaging(0.998) TCGA-98-8023-01 6 25923926 25923926 T C SLC17A2 Silent p.T79T 0.27 TCGA-98-8023-01 6 26234538 26234538 C T HIST1H1D Silent p.P208P 0.35 TCGA-98-8023-01 6 30121550 30121550 T G TRIM10 3'UTR 0.33 TCGA-98-8023-01 6 486615 486615 G C EXOC2 3'UTR 0.43 TCGA-98-8023-01 6 51609260 51609260 C T PKHD1 Missense_Mutation p.R3360K 0.11 tolerated(0.2) benign(0.101) TCGA-98-8023-01 6 51890855 51890855 G T PKHD1 Silent p.T1251T 0.16 TCGA-98-8023-01 6 53989522 53989522 A T MLIP Silent p.A157A 0.14 TCGA-98-8023-01 6 54805276 54805276 G A FAM83B Missense_Mutation p.D503N 0.11 tolerated(0.47) possibly_damaging(0.492) TCGA-98-8023-01 6 54806029 54806029 G C FAM83B Missense_Mutation p.E754Q 0.08 tolerated(0.19) benign(0.019) TCGA-98-8023-01 6 55659199 55659199 G T BMP5 Missense_Mutation p.T237K 0.24 tolerated(0.24) benign(0.143) TCGA-98-8023-01 6 63995529 63995529 A C LGSN Missense_Mutation p.V98G 0.27 deleterious(0) probably_damaging(0.981) TCGA-98-8023-01 6 69665955 69665955 G T BAI3 Missense_Mutation p.C412F 0.12 deleterious(0) probably_damaging(0.913) TCGA-98-8023-01 7 100685182 100685182 C T MUC17 Silent p.T3495T 0.23 TCGA-98-8023-01 7 100687012 100687012 C A MUC17 Missense_Mutation p.F4105L 0.11 unknown(0) TCGA-98-8023-01 7 107746388 107746388 G T LAMB4 Silent p.S248S 0.05 TCGA-98-8023-01 7 123296022 123296022 C A LMOD2 Missense_Mutation p.S2Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-98-8023-01 7 135269606 135269606 G T NUP205 Nonsense_Mutation p.E357* 0.09 TCGA-98-8023-01 7 140035242 140035242 T A SLC37A3 Silent p.L485L 0.28 TCGA-98-8023-01 7 148525893 148525893 A G EZH2 Silent p.D188D 0.19 TCGA-98-8023-01 7 150645628 150645628 T G KCNH2 Missense_Mutation p.N866H 0.09 deleterious(0.04) benign(0.099) TCGA-98-8023-01 7 158723183 158723183 T C WDR60 Silent p.S841S 0.16 TCGA-98-8023-01 7 158829536 158829536 A G VIPR2 Missense_Mutation p.W219R 0.15 deleterious(0) probably_damaging(1) TCGA-98-8023-01 7 23749944 23749944 G A STK31 Missense_Mutation p.E14K 0.20 tolerated_low_confidence(0.16) benign(0.055) TCGA-98-8023-01 7 41729977 41729977 G T INHBA Silent p.G184G 0.23 TCGA-98-8023-01 7 42961513 42961513 C T PSMA2 Nonsense_Mutation p.W158* 0.09 TCGA-98-8023-01 7 44797145 44797145 G C ZMIZ2 Silent p.L179L 0.31 TCGA-98-8023-01 7 45956885 45956885 T C IGFBP3 Missense_Mutation p.Y192C 0.14 deleterious(0.03) probably_damaging(0.998) TCGA-98-8023-01 7 48520668 48520668 G C ABCA13 Silent p.L4337L 0.33 TCGA-98-8023-01 7 4917629 4917629 C T RADIL Missense_Mutation p.A48T 0.23 tolerated(0.23) benign(0.011) TCGA-98-8023-01 7 72730576 72730576 T C TRIM50 Missense_Mutation p.K288E 0.08 tolerated(0.19) benign(0.114) TCGA-98-8023-01 7 83036463 83036463 C A SEMA3E Missense_Mutation p.A255S 0.28 tolerated(0.31) benign(0.026) TCGA-98-8023-01 7 87459330 87459330 C A RUNDC3B Silent p.G469G 0.17 TCGA-98-8023-01 7 92730795 92730795 A G SAMD9 Missense_Mutation p.L1539S 0.14 deleterious(0) possibly_damaging(0.447) TCGA-98-8023-01 8 110420350 110420350 A T PKHD1L1 Missense_Mutation p.K629I 0.10 deleterious(0) probably_damaging(0.996) TCGA-98-8023-01 8 11142466 11142466 G T MTMR9 Silent p.P23P 0.07 TCGA-98-8023-01 8 133726266 133726266 A T TMEM71 Missense_Mutation p.Y264N 0.06 deleterious(0.04) possibly_damaging(0.805) TCGA-98-8023-01 8 139636005 139636005 T A COL22A1 Missense_Mutation p.R1247S 0.23 unknown(0) TCGA-98-8023-01 8 145135007 145135007 C G EXOSC4 Missense_Mutation p.I111M 0.12 deleterious(0) probably_damaging(0.988) TCGA-98-8023-01 8 145579654 145579654 G A FBXL6 Silent p.G482G 0.22 TCGA-98-8023-01 8 25365238 25365238 G C CDCA2 Missense_Mutation p.G1019A 0.13 tolerated_low_confidence(0.26) benign(0.275) TCGA-98-8023-01 8 30705962 30705962 T C TEX15 Missense_Mutation p.K191R 0.09 tolerated(0.08) benign(0.016) TCGA-98-8023-01 8 35579771 35579771 T G UNC5D Silent p.G387G 0.04 TCGA-98-8023-01 8 38003931 38003931 G A STAR Missense_Mutation p.P114L 0.12 deleterious(0) benign(0.361) TCGA-98-8023-01 8 38271103 38271103 T C FGFR1 3'UTR 0.15 TCGA-98-8023-01 8 48842570 48842570 T C PRKDC Missense_Mutation p.E632G 0.07 possibly_damaging(0.598) TCGA-98-8023-01 8 51306798 51306798 C A SNTG1 5'UTR 0.21 TCGA-98-8023-01 8 62212459 62212459 C A CLVS1 Missense_Mutation p.H25N 0.15 deleterious(0.04) probably_damaging(0.912) TCGA-98-8023-01 8 69445362 69445362 A C C8orf34 Missense_Mutation p.E361D 0.12 tolerated(0.31) probably_damaging(0.946) TCGA-98-8023-01 8 71593364 71593364 T A XKR9 Missense_Mutation p.V24E 0.18 deleterious(0.01) possibly_damaging(0.841) TCGA-98-8023-01 8 93026858 93026858 G T RUNX1T1 Missense_Mutation p.D150E 0.21 deleterious(0.03) benign(0.199) TCGA-98-8023-01 8 98289966 98289966 G C TSPYL5 Missense_Mutation p.P36R 0.24 tolerated(0.29) unknown(0) TCGA-98-8023-01 9 113194870 113194870 G T SVEP1 Nonsense_Mutation p.S1702* 0.27 TCGA-98-8023-01 9 120475098 120475110 TGACTTTAAGAAA - TLR4 Frame_Shift_Del p.T232Ifs*5 0.22 TCGA-98-8023-01 9 26842456 26842456 T G CAAP1 Missense_Mutation p.E310A 0.16 deleterious(0.02) possibly_damaging(0.488) TCGA-98-8023-01 9 71532505 71532505 G T PIP5K1B Missense_Mutation p.L271F 0.21 deleterious(0.01) probably_damaging(0.961) TCGA-98-8023-01 9 71532506 71532506 G T PIP5K1B Nonsense_Mutation p.G272* 0.20 TCGA-98-8023-01 9 79324329 79324329 A C PRUNE2 Missense_Mutation p.L954R 0.34 deleterious(0.01) benign(0.265) TCGA-98-8023-01 X 100274025 100274025 C G TRMT2B Missense_Mutation p.R441S 0.18 tolerated(0.23) benign(0.016) TCGA-98-8023-01 X 107423817 107423817 C A COL4A6 Missense_Mutation p.G688C 0.33 probably_damaging(1) TCGA-98-8023-01 X 118774743 118774743 C A SEPT6 Silent p.L233L 0.35 TCGA-98-8023-01 X 135488010 135488010 C A GPR112 Missense_Mutation p.D2938E 0.28 deleterious(0.01) possibly_damaging(0.838) TCGA-98-8023-01 X 153641542 153641542 A G TAZ Splice_Site p.X80_splice 0.38 TCGA-98-8023-01 X 5821698 5821698 C G NLGN4X Missense_Mutation p.G341R 0.32 deleterious(0) probably_damaging(1) TCGA-98-8023-01 X 591598 591598 C A SHOX 5'UTR 0.19 TCGA-98-8023-01 X 73053113 73053113 G A XIST RNA 0.23 TCGA-98-8023-01 X 75650123 75650123 G T MAGEE1 Missense_Mutation p.E600D 0.36 deleterious(0.01) possibly_damaging(0.808) TCGA-98-8023-01 X 99551797 99551797 G T PCDH19 Missense_Mutation p.N975K 0.25 tolerated(0.29) benign(0.045) TCGA-98-A538-01 10 101841200 101841200 G C CPN1 Nonsense_Mutation p.Y61* 0.74 TCGA-98-A538-01 10 108432694 108432694 C A SORCS1 Missense_Mutation p.D664Y 0.51 deleterious(0) probably_damaging(0.985) TCGA-98-A538-01 10 112038945 112038945 C A MXI1 Missense_Mutation p.H149N 0.48 deleterious(0.05) benign(0.307) TCGA-98-A538-01 10 124339224 124339224 G T DMBT1 Silent p.V270V 0.45 TCGA-98-A538-01 10 133753534 133753534 G C PPP2R2D Splice_Site p.X36_splice 0.33 TCGA-98-A538-01 10 17113840 17113840 G T CUBN Missense_Mutation p.A811D 0.19 deleterious(0) probably_damaging(1) TCGA-98-A538-01 10 22618311 22618311 G C BMI1 Missense_Mutation p.S274T 0.16 tolerated_low_confidence(0.1) benign(0.038) TCGA-98-A538-01 10 298455 298455 C A ZMYND11 3'UTR 0.40 TCGA-98-A538-01 10 31809315 31809315 T A ZEB1 Missense_Mutation p.V352E 0.43 deleterious(0) probably_damaging(0.96) TCGA-98-A538-01 10 38121547 38121547 C T ZNF248 Missense_Mutation p.E246K 0.05 deleterious(0.05) benign(0.037) TCGA-98-A538-01 10 43089589 43089589 G C ZNF33B Nonsense_Mutation p.S270* 0.15 TCGA-98-A538-01 10 43701477 43701477 C G RASGEF1A Missense_Mutation p.G30R 0.47 tolerated(0.05) possibly_damaging(0.894) TCGA-98-A538-01 10 44052516 44052516 G A ZNF239 Nonsense_Mutation p.Q338* 0.42 TCGA-98-A538-01 10 54530539 54530539 C - MBL2 Frame_Shift_Del p.L66Sfs*75 0.37 TCGA-98-A538-01 10 55568827 55568827 A - PCDH15 Frame_Shift_Del p.A596Qfs*153 0.34 TCGA-98-A538-01 10 78709040 78709040 G T KCNMA1 Missense_Mutation p.L840I 0.45 deleterious(0) possibly_damaging(0.751) TCGA-98-A538-01 10 81317266 81317266 T A SFTPA2 Missense_Mutation p.D149V 0.76 tolerated(0.2) benign(0.362) TCGA-98-A538-01 10 85981810 85981810 G T LRIT2 Missense_Mutation p.P507T 0.45 tolerated(0.52) benign(0.115) TCGA-98-A538-01 10 89692923 89692923 G T PTEN Missense_Mutation p.C136F 0.42 deleterious(0) probably_damaging(0.918) TCGA-98-A538-01 10 90486562 90486562 T C LIPK Missense_Mutation p.I39T 0.29 deleterious(0) probably_damaging(0.999) TCGA-98-A538-01 10 90697849 90697849 G A ACTA2 Missense_Mutation p.T320M 0.19 deleterious_low_confidence(0.02) benign(0.078) TCGA-98-A538-01 10 97918493 97918493 C A ZNF518A RNA 0.74 TCGA-98-A538-01 10 98806445 98806445 C G SLIT1 Missense_Mutation p.G607R 0.72 tolerated(0.88) benign(0.431) TCGA-98-A538-01 11 102482516 102482516 C T MMP20 Missense_Mutation p.A165T 0.24 deleterious(0) probably_damaging(0.999) TCGA-98-A538-01 11 102647008 102647008 G A MMP10 Intron 0.14 TCGA-98-A538-01 11 1028289 1028289 C A MUC6 Missense_Mutation p.A564S 0.55 unknown(0) TCGA-98-A538-01 11 104879644 104879644 C A CASP5 Missense_Mutation p.S37I 0.15 tolerated_low_confidence(0.07) benign(0.021) TCGA-98-A538-01 11 106680970 106680970 G A GUCY1A2 Nonsense_Mutation p.Q481* 0.29 TCGA-98-A538-01 11 107219704 107219704 C T CWF19L2 Missense_Mutation p.A721T 0.28 deleterious(0) possibly_damaging(0.823) TCGA-98-A538-01 11 107535931 107535931 C A ELMOD1 3'UTR 0.24 TCGA-98-A538-01 11 110134918 110134918 G T RDX Missense_Mutation p.F78L 0.21 tolerated(0.06) possibly_damaging(0.838) TCGA-98-A538-01 11 119029284 119029284 G T ABCG4 Silent p.R395R 0.25 TCGA-98-A538-01 11 119170503 119170503 C T CBL 3'UTR 0.20 TCGA-98-A538-01 11 119213580 119213580 T C MFRP Intron 0.28 TCGA-98-A538-01 11 120732803 120732803 G T GRIK4 Missense_Mutation p.D294Y 0.24 deleterious(0.01) possibly_damaging(0.678) TCGA-98-A538-01 11 121016720 121016720 G T TECTA Missense_Mutation p.D1334Y 0.25 deleterious(0.02) probably_damaging(0.918) TCGA-98-A538-01 11 12241943 12241943 C A MICAL2 Missense_Mutation p.L382M 0.30 tolerated(0.15) probably_damaging(0.999) TCGA-98-A538-01 11 123847434 123847435 CG - OR10S1 Frame_Shift_Del p.E323Vfs*? 0.11 TCGA-98-A538-01 11 124412774 124412774 G C OR8B12 Silent p.L259L 0.18 TCGA-98-A538-01 11 126294855 126294855 A T KIRREL3 Missense_Mutation p.S653T 0.14 tolerated(0.51) benign(0.015) TCGA-98-A538-01 11 1271203 1271203 G T MUC5B Missense_Mutation p.V4365L 0.14 benign(0.003) TCGA-98-A538-01 11 130284576 130284576 G T ADAMTS8 Nonsense_Mutation p.C472* 0.16 TCGA-98-A538-01 11 132398967 132398967 G T OPCML Missense_Mutation p.L172M 0.34 tolerated(0.07) possibly_damaging(0.738) TCGA-98-A538-01 11 133816061 133816061 C G IGSF9B Missense_Mutation p.G53R 0.35 deleterious(0) probably_damaging(0.989) TCGA-98-A538-01 11 134134904 134134904 G C ACAD8 3'UTR 0.18 TCGA-98-A538-01 11 14853185 14853185 G T PDE3B Splice_Site p.X653_splice 0.23 TCGA-98-A538-01 11 17554872 17554872 G - USH1C Intron 0.15 TCGA-98-A538-01 11 22301099 22301100 TT A ANO5 Frame_Shift_Del p.F844Ifs*2 0.32 TCGA-98-A538-01 11 26692569 26692569 C A SLC5A12 3'UTR 0.24 TCGA-98-A538-01 11 27389871 27389871 A G LGR4 Missense_Mutation p.L800P 0.24 deleterious(0) probably_damaging(1) TCGA-98-A538-01 11 30974043 30974043 C G DCDC1 Missense_Mutation p.W888C 0.17 deleterious(0) possibly_damaging(0.64) TCGA-98-A538-01 11 44089268 44089268 G T ACCS Missense_Mutation p.D31Y 0.22 deleterious(0.02) benign(0.423) TCGA-98-A538-01 11 44146423 44146423 T A EXT2 Missense_Mutation p.H309Q 0.17 tolerated(0.12) benign(0.016) TCGA-98-A538-01 11 4703106 4703106 T C OR51E2 Missense_Mutation p.Y279C 0.19 deleterious(0.01) benign(0.062) TCGA-98-A538-01 11 48347185 48347185 C A OR4C3 Silent p.I231I 0.19 TCGA-98-A538-01 11 4843491 4843491 T C OR51F2 Silent p.N292N 0.32 TCGA-98-A538-01 11 5344563 5344563 C T OR51B2 3'UTR 0.22 TCGA-98-A538-01 11 5529886 5529886 A G UBQLN3 Silent p.P301P 0.17 TCGA-98-A538-01 11 55579840 55579840 G C OR5L1 Missense_Mutation p.A300P 0.18 deleterious(0) possibly_damaging(0.757) TCGA-98-A538-01 11 55594852 55594852 C A OR5L2 Missense_Mutation p.S53Y 0.19 deleterious(0.01) benign(0.372) TCGA-98-A538-01 11 5565850 5565850 C A OR52H1 Missense_Mutation p.V302L 0.23 deleterious(0) benign(0.082) TCGA-98-A538-01 11 55659149 55659149 C A TRIM51 3'UTR 0.22 TCGA-98-A538-01 11 55798322 55798322 G T OR5AS1 Missense_Mutation p.C143F 0.21 tolerated(0.7) benign(0.006) TCGA-98-A538-01 11 56019837 56019837 A T OR5T3 Missense_Mutation p.Q54H 0.18 deleterious(0.01) benign(0.062) TCGA-98-A538-01 11 56143469 56143469 G A OR8U1 Missense_Mutation p.V124M 0.17 deleterious(0.05) benign(0.213) TCGA-98-A538-01 11 56230219 56230219 A G OR5M9 Missense_Mutation p.V220A 0.18 deleterious(0.03) benign(0.155) TCGA-98-A538-01 11 56380275 56380275 T - OR5M1 Frame_Shift_Del p.H235Pfs*11 0.16 TCGA-98-A538-01 11 56468220 56468220 T C OR9G1 Silent p.Y119Y 0.10 TCGA-98-A538-01 11 57093863 57093863 G C SSRP1 3'UTR 0.16 TCGA-98-A538-01 11 58477632 58477632 C A GLYAT Missense_Mutation p.E166D 0.22 tolerated(0.17) benign(0.232) TCGA-98-A538-01 11 58746800 58746800 T A RP11-142C4.6 Splice_Site 0.30 TCGA-98-A538-01 11 5878485 5878485 T A OR52E8 Missense_Mutation p.I150F 0.25 deleterious(0.01) benign(0.35) TCGA-98-A538-01 11 5905646 5905646 G T OR52E4 Missense_Mutation p.V42L 0.19 tolerated(1) benign(0.008) TCGA-98-A538-01 11 59245370 59245370 C A OR4D10 Silent p.S156S 0.15 TCGA-98-A538-01 11 60184537 60184537 G A MS4A14 3'UTR 0.15 TCGA-98-A538-01 11 6231522 6231522 A C C11orf42 Missense_Mutation p.Q172P 0.18 deleterious(0.02) possibly_damaging(0.854) TCGA-98-A538-01 11 62344406 62344406 T A TUT1 Missense_Mutation p.T490S 0.18 tolerated(0.06) benign(0.042) TCGA-98-A538-01 11 63273887 63273887 G T LGALS12 Missense_Mutation p.R8M 0.10 deleterious_low_confidence(0) benign(0.143) TCGA-98-A538-01 11 64024148 64024148 G T PLCB3 Silent p.L308L 0.44 TCGA-98-A538-01 11 64108127 64108127 G A CCDC88B Missense_Mutation p.E37K 0.38 tolerated(0.53) benign(0.016) TCGA-98-A538-01 11 64666231 64666231 C T ATG2A Silent p.L1516L 0.15 TCGA-98-A538-01 11 65273628 65273628 C G MALAT1 RNA 0.14 TCGA-98-A538-01 11 65789065 65789065 G T CATSPER1 Silent p.T531T 0.52 TCGA-98-A538-01 11 66468532 66468532 G A SPTBN2 Missense_Mutation p.A1013V 0.66 deleterious(0.05) benign(0.185) TCGA-98-A538-01 11 67267569 67267569 C T PITPNM1 Missense_Mutation p.G322R 0.07 deleterious(0.04) probably_damaging(0.982) TCGA-98-A538-01 11 67765909 67765909 C A UNC93B1 Missense_Mutation p.C234F 0.69 tolerated(0.87) benign(0.023) TCGA-98-A538-01 11 68153939 68153939 G C LRP5 Missense_Mutation p.D391H 0.05 deleterious(0) probably_damaging(0.999) TCGA-98-A538-01 11 68171148 68171148 G A LRP5 Silent p.V594V 0.06 TCGA-98-A538-01 11 70028646 70028646 C A ANO1 Silent p.R814R 0.03 TCGA-98-A538-01 11 7059865 7059865 A - NLRP14 Frame_Shift_Del p.L17Cfs*6 0.15 TCGA-98-A538-01 11 71249138 71249138 G T KRTAP5-8 Missense_Mutation p.G13C 0.23 deleterious_low_confidence(0) unknown(0) TCGA-98-A538-01 11 7507224 7507224 C A OLFML1 Silent p.R40R 0.13 TCGA-98-A538-01 11 75902851 75902851 C A WNT11 Missense_Mutation p.G216V 0.23 deleterious(0) probably_damaging(0.927) TCGA-98-A538-01 11 760170 760170 C T TALDO1 Silent p.I126I 0.20 TCGA-98-A538-01 11 85407326 85407326 C G SYTL2 Missense_Mutation p.R1191S 0.22 deleterious(0.02) probably_damaging(0.914) TCGA-98-A538-01 12 10569320 10569320 C G KLRC3 Missense_Mutation p.R178P 0.33 deleterious(0) probably_damaging(0.998) TCGA-98-A538-01 12 113385855 113385855 C T OAS3 Missense_Mutation p.P327L 0.34 tolerated(0.3) benign(0.034) TCGA-98-A538-01 12 117494667 117494667 C T TESC Silent p.P51P 0.30 TCGA-98-A538-01 12 118848925 118848925 A T SUDS3 Missense_Mutation p.K284I 0.50 deleterious(0) possibly_damaging(0.855) TCGA-98-A538-01 12 121001176 121001176 C T RNF10 Silent p.F427F 0.43 TCGA-98-A538-01 12 12339969 12339969 T A LRP6 Silent p.T244T 0.29 TCGA-98-A538-01 12 15731863 15731863 C A PTPRO Missense_Mutation p.T969K 0.33 deleterious(0.02) probably_damaging(0.989) TCGA-98-A538-01 12 1995454 1995454 C T CACNA2D4 Missense_Mutation p.A310T 0.29 deleterious(0) probably_damaging(0.978) TCGA-98-A538-01 12 20801663 20801663 C T PDE3A Silent p.H869H 0.27 TCGA-98-A538-01 12 2224592 2224592 G T CACNA1C Missense_Mutation p.Q84H 0.29 deleterious(0.01) probably_damaging(0.992) TCGA-98-A538-01 12 25054806 25054806 C A BCAT1 Missense_Mutation p.G19V 0.18 tolerated(0.12) benign(0.043) TCGA-98-A538-01 12 27235270 27235270 A G C12orf71 Silent p.P49P 0.26 TCGA-98-A538-01 12 352932 352932 G A SLC6A13 Missense_Mutation p.P84S 0.17 deleterious(0) probably_damaging(0.936) TCGA-98-A538-01 12 40020051 40020051 G T C12orf40 5'UTR 0.37 TCGA-98-A538-01 12 40761460 40761460 T C LRRK2 Silent p.L2493L 0.51 TCGA-98-A538-01 12 52881722 52881722 C T KRT6A Missense_Mutation p.V493I 0.42 tolerated(0.19) benign(0.003) TCGA-98-A538-01 12 53071971 53071971 C G KRT1 Missense_Mutation p.E281D 0.44 deleterious(0) probably_damaging(0.996) TCGA-98-A538-01 12 53471030 53471030 G T SPRYD3 Missense_Mutation p.N13K 0.35 tolerated_low_confidence(0.36) benign(0) TCGA-98-A538-01 12 6626069 6626069 G T NCAPD2 Nonsense_Mutation p.E355* 0.32 TCGA-98-A538-01 12 66935730 66935730 T A GRIP1 Missense_Mutation p.E46V 0.47 deleterious(0) possibly_damaging(0.592) TCGA-98-A538-01 12 75444738 75444738 C G KCNC2 Silent p.V349V 0.42 TCGA-98-A538-01 12 75804287 75804287 T C GLIPR1L2 Missense_Mutation p.L103S 0.43 deleterious(0) probably_damaging(1) TCGA-98-A538-01 12 7805063 7805063 C T APOBEC1 Missense_Mutation p.G138E 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-98-A538-01 12 81741321 81741321 G T PPFIA2 Silent p.V741V 0.38 TCGA-98-A538-01 12 8196634 8196634 G T FOXJ2 Missense_Mutation p.G189W 0.14 deleterious(0) possibly_damaging(0.869) TCGA-98-A538-01 12 8211589 8211589 A G C3AR1 Missense_Mutation p.V398A 0.09 tolerated(0.14) benign(0.422) TCGA-98-A538-01 12 8212645 8212645 C T C3AR1 Nonsense_Mutation p.W46* 0.25 TCGA-98-A538-01 12 85441023 85441023 A G LRRIQ1 Splice_Site p.X152_splice 0.52 TCGA-98-A538-01 13 101735550 101735550 C G NALCN Splice_Site p.X1195_splice 0.33 TCGA-98-A538-01 13 102375190 102375190 C G FGF14 Missense_Mutation p.K250N 0.50 deleterious_low_confidence(0.03) benign(0.138) TCGA-98-A538-01 13 103288733 103288733 G A TPP2 Missense_Mutation p.E557K 0.26 tolerated(0.13) possibly_damaging(0.505) TCGA-98-A538-01 13 114134937 114134937 C A DCUN1D2 Missense_Mutation p.Q114H 0.28 deleterious(0) possibly_damaging(0.866) TCGA-98-A538-01 13 23905642 23905642 C A SACS Nonsense_Mutation p.G4125* 0.57 TCGA-98-A538-01 13 24242123 24242123 G A TNFRSF19 Silent p.P247P 0.47 TCGA-98-A538-01 13 25671689 25671689 T A PABPC3 Silent p.G451G 0.52 TCGA-98-A538-01 13 25744656 25744656 C T AMER2 Missense_Mutation p.D368N 0.56 deleterious(0) probably_damaging(0.999) TCGA-98-A538-01 13 29598844 29598844 C G MTUS2 Silent p.V13V 0.22 TCGA-98-A538-01 13 42142296 42142296 C G VWA8 3'UTR 0.30 TCGA-98-A538-01 13 78192151 78192151 C T SCEL Silent p.D528D 0.19 TCGA-98-A538-01 13 99038018 99038018 G T FARP1 Missense_Mutation p.G237C 0.37 deleterious(0) probably_damaging(0.999) TCGA-98-A538-01 13 99966377 99966377 T C UBAC2 Missense_Mutation p.V139A 0.34 deleterious(0) possibly_damaging(0.684) TCGA-98-A538-01 14 101195299 101195299 T A DLK1 Missense_Mutation p.L53H 0.35 tolerated(0.35) probably_damaging(0.943) TCGA-98-A538-01 14 101200538 101200538 C A DLK1 Missense_Mutation p.H153N 0.35 tolerated(0.1) possibly_damaging(0.89) TCGA-98-A538-01 14 101200539 101200539 A T DLK1 Missense_Mutation p.H153L 0.36 deleterious(0.01) possibly_damaging(0.752) TCGA-98-A538-01 14 105179838 105179838 G A INF2 Missense_Mutation p.D979N 0.15 deleterious(0.01) unknown(0) TCGA-98-A538-01 14 105521894 105521894 C A GPR132 5'UTR 0.23 TCGA-98-A538-01 14 106109828 106109828 G T IGHG2 Silent p.P231P 0.32 TCGA-98-A538-01 14 106237477 106237477 G A IGHG3 Silent p.P89P 0.18 TCGA-98-A538-01 14 106573350 106573350 G A IGHV3-11 Silent p.Y78Y 0.16 TCGA-98-A538-01 14 106993931 106993931 G A IGHV3-48 Silent p.Y78Y 0.09 TCGA-98-A538-01 14 19377840 19377840 T - OR11H12 Frame_Shift_Del p.L84* 0.18 TCGA-98-A538-01 14 20249244 20249244 C A OR4M1 Missense_Mutation p.P255T 0.21 deleterious(0) probably_damaging(1) TCGA-98-A538-01 14 20295971 20295971 C A OR4N2 Missense_Mutation p.R122S 0.20 deleterious(0) possibly_damaging(0.738) TCGA-98-A538-01 14 20666364 20666364 C G OR11G2 Nonsense_Mutation p.Y290* 0.37 TCGA-98-A538-01 14 21526433 21526433 C T RNASE8 Missense_Mutation p.P128S 0.13 tolerated(0.52) benign(0.005) TCGA-98-A538-01 14 21991139 21991139 C T SALL2 Missense_Mutation p.S908N 0.14 tolerated(0.35) benign(0.002) TCGA-98-A538-01 14 22134149 22134149 T G OR4E2 Missense_Mutation p.F285V 0.21 tolerated(0.24) benign(0) TCGA-98-A538-01 14 24517896 24517896 C T LRRC16B 5'Flank 0.32 TCGA-98-A538-01 14 30100036 30100036 C A PRKD1 Silent p.V528V 0.18 TCGA-98-A538-01 14 38061293 38061293 T A FOXA1 Silent p.A232A 0.12 TCGA-98-A538-01 14 38724707 38724707 T C CLEC14A Missense_Mutation p.Q174R 0.17 tolerated(0.17) possibly_damaging(0.608) TCGA-98-A538-01 14 45542624 45542624 C A FAM179B Silent p.R1675R 0.41 TCGA-98-A538-01 14 58831414 58831414 A T ARID4A Silent p.I869I 0.45 TCGA-98-A538-01 14 58949357 58949357 G C KIAA0586 Missense_Mutation p.R1077T 0.06 deleterious(0.04) benign(0.076) TCGA-98-A538-01 14 59112427 59112427 G A DACT1 Silent p.V362V 0.14 TCGA-98-A538-01 14 64610593 64610593 G T SYNE2 Missense_Mutation p.R5137I 0.15 possibly_damaging(0.897) TCGA-98-A538-01 14 65406274 65406274 A T GPX2 Missense_Mutation p.Y169N 0.41 deleterious(0) probably_damaging(1) TCGA-98-A538-01 14 71571989 71571989 G T PCNX Missense_Mutation p.G2045C 0.30 deleterious(0) probably_damaging(1) TCGA-98-A538-01 14 73006772 73006772 A T RGS6 Missense_Mutation p.R464S 0.43 deleterious(0.04) benign(0.124) TCGA-98-A538-01 14 73407028 73407028 G A DCAF4 Silent p.Q98Q 0.17 TCGA-98-A538-01 14 75375884 75375884 C A RPS6KL1 Missense_Mutation p.R427L 0.19 tolerated(0.21) possibly_damaging(0.894) TCGA-98-A538-01 14 76928922 76928922 G T ESRRB Missense_Mutation p.E144D 0.36 tolerated(0.34) benign(0.261) TCGA-98-A538-01 14 81366301 81366301 C G CEP128 Missense_Mutation p.E185Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-98-A538-01 14 88416190 88416190 C A GALC Missense_Mutation p.W446L 0.29 tolerated(0.48) benign(0.002) TCGA-98-A538-01 14 89124640 89124640 T G EML5 Silent p.L1256L 0.13 TCGA-98-A538-01 14 92620740 92620740 A T CPSF2 Missense_Mutation p.E393D 0.37 tolerated(0.21) benign(0.009) TCGA-98-A538-01 14 94752558 94752558 G T SERPINA10 Missense_Mutation p.Q344K 0.19 tolerated(0.05) possibly_damaging(0.713) TCGA-98-A538-01 14 95560452 95560452 C A DICER1 Missense_Mutation p.D1713Y 0.43 deleterious(0) probably_damaging(1) TCGA-98-A538-01 14 95906020 95906020 C G SYNE3 Silent p.V725V 0.42 TCGA-98-A538-01 15 20651112 20651112 C T HERC2P3 Intron 0.16 TCGA-98-A538-01 15 22993108 22993108 G A CYFIP1 Missense_Mutation p.E999K 0.19 deleterious(0.01) probably_damaging(0.954) TCGA-98-A538-01 15 23445325 23445325 G C AC100757.1 3'Flank 0.15 TCGA-98-A538-01 15 25321098 25321098 G T SNORD116-11 RNA 0.22 TCGA-98-A538-01 15 25448304 25448304 C A SNORD115-20 5'Flank 0.40 TCGA-98-A538-01 15 29346851 29346851 A T APBA2 Missense_Mutation p.E255V 0.15 deleterious_low_confidence(0) benign(0.083) TCGA-98-A538-01 15 30034974 30034974 C G TJP1 Missense_Mutation p.R341T 0.16 deleterious(0.01) benign(0.018) TCGA-98-A538-01 15 32450644 32450644 T C CHRNA7 Silent p.Y239Y 0.16 TCGA-98-A538-01 15 32916521 32916521 A G ARHGAP11A Missense_Mutation p.T149A 0.35 tolerated(0.14) benign(0.02) TCGA-98-A538-01 15 33895410 33895410 A T RYR3 Missense_Mutation p.D670V 0.18 benign(0.204) TCGA-98-A538-01 15 34105146 34105146 C A RYR3 Missense_Mutation p.T3447K 0.17 benign(0.13) TCGA-98-A538-01 15 34110801 34110801 A C RYR3 Missense_Mutation p.E3541A 0.22 benign(0.23) TCGA-98-A538-01 15 34110803 34110803 G C RYR3 Missense_Mutation p.E3542Q 0.23 possibly_damaging(0.67) TCGA-98-A538-01 15 35082753 35082753 T A ACTC1 Missense_Mutation p.I332F 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.641) TCGA-98-A538-01 15 43653653 43653653 C A ZSCAN29 Missense_Mutation p.R726I 0.32 deleterious(0) probably_damaging(0.999) TCGA-98-A538-01 15 45660326 45660326 C A GATM Missense_Mutation p.R206L 0.18 deleterious(0.04) benign(0.127) TCGA-98-A538-01 15 48435097 48435097 G A MYEF2 3'UTR 0.17 TCGA-98-A538-01 15 56993166 56993166 C A ZNF280D Missense_Mutation p.D116Y 0.43 tolerated(0.07) possibly_damaging(0.815) TCGA-98-A538-01 15 63449674 63449674 T A RPS27L 5'UTR 0.27 TCGA-98-A538-01 15 75656454 75656454 C A MAN2C1 Missense_Mutation p.A226S 0.11 tolerated(0.76) benign(0.004) TCGA-98-A538-01 15 75980366 75980366 C A CSPG4 Missense_Mutation p.V1014L 0.39 deleterious(0.03) benign(0.14) TCGA-98-A538-01 15 76225587 76225587 G T FBXO22 3'UTR 0.20 TCGA-98-A538-01 15 78211374 78211374 T C RP11-114H24.7 Intron 0.32 TCGA-98-A538-01 15 79382948 79382948 C A RASGRF1 5'UTR 0.46 TCGA-98-A538-01 15 81631839 81631839 G A TMC3 Silent p.N617N 0.33 TCGA-98-A538-01 15 85147279 85147279 G T ZSCAN2 Missense_Mutation p.V41L 0.44 tolerated(0.32) benign(0.056) TCGA-98-A538-01 15 90319987 90319987 C G MESP2 Silent p.G133G 0.25 TCGA-98-A538-01 15 91475072 91475072 C A HDDC3 Missense_Mutation p.D91Y 0.37 deleterious(0) probably_damaging(0.998) TCGA-98-A538-01 16 10841073 10841073 T G NUBP1 Silent p.V66V 0.18 TCGA-98-A538-01 16 14972625 14972625 G T NOMO1 Silent p.L897L 0.21 TCGA-98-A538-01 16 15917206 15917206 C G MYH11 Missense_Mutation p.E136D 0.13 benign(0.008) TCGA-98-A538-01 16 16218743 16218743 G T ABCC1 Missense_Mutation p.V1230L 0.29 deleterious(0) benign(0.107) TCGA-98-A538-01 16 1816638 1816638 C T MAPK8IP3 Silent p.A975A 0.19 TCGA-98-A538-01 16 18861400 18861400 C A SMG1 Nonsense_Mutation p.E1778* 0.16 TCGA-98-A538-01 16 18861401 18861401 C A SMG1 Silent p.V1777V 0.16 TCGA-98-A538-01 16 18874981 18874981 T C SMG1 Missense_Mutation p.N1229S 0.13 deleterious(0.03) probably_damaging(0.97) TCGA-98-A538-01 16 23692354 23692354 G T PLK1 Missense_Mutation p.D233Y 0.11 deleterious(0) probably_damaging(1) TCGA-98-A538-01 16 24801705 24801705 C T TNRC6A Missense_Mutation p.S581F 0.31 deleterious(0.04) possibly_damaging(0.486) TCGA-98-A538-01 16 24809234 24809234 A C TNRC6A Splice_Site p.X1215_splice 0.17 TCGA-98-A538-01 16 24981877 24981877 C G ARHGAP17 Missense_Mutation p.A75P 0.32 deleterious(0) probably_damaging(0.979) TCGA-98-A538-01 16 27561470 27561470 C T GTF3C1 5'Flank 0.49 TCGA-98-A538-01 16 28112940 28112940 G A XPO6 Missense_Mutation p.H1039Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-98-A538-01 16 2813426 2813426 G A SRRM2 Missense_Mutation p.R966K 0.18 unknown(0) TCGA-98-A538-01 16 28509066 28509066 G T APOBR Missense_Mutation p.G902W 0.40 deleterious(0) probably_damaging(0.979) TCGA-98-A538-01 16 2998849 2998849 G C FLYWCH1 3'UTR 0.28 TCGA-98-A538-01 16 30389936 30389936 C G SEPT1 Missense_Mutation p.E343Q 0.13 benign(0.093) TCGA-98-A538-01 16 30456552 30456552 C A SEPHS2 Missense_Mutation p.G166V 0.23 probably_damaging(0.999) TCGA-98-A538-01 16 33965544 33965544 G C RNA5-8SP2 RNA 0.20 TCGA-98-A538-01 16 3705894 3705894 C A DNASE1 Missense_Mutation p.D64E 0.15 tolerated(0.07) probably_damaging(0.997) TCGA-98-A538-01 16 48595433 48595433 G T N4BP1 Missense_Mutation p.S374Y 0.18 deleterious(0) possibly_damaging(0.728) TCGA-98-A538-01 16 51170993 51170993 A T SALL1 3'UTR 0.48 TCGA-98-A538-01 16 57828953 57828953 C A KIFC3 Missense_Mutation p.W91C 0.48 deleterious_low_confidence(0.02) benign(0.387) TCGA-98-A538-01 16 58030874 58030874 C T ZNF319 Silent p.V432V 0.50 TCGA-98-A538-01 16 67432171 67432171 C T ZDHHC1 Missense_Mutation p.A291T 0.39 tolerated(0.1) benign(0.03) TCGA-98-A538-01 16 70843837 70843837 T A HYDIN Missense_Mutation p.D4911V 0.44 probably_damaging(0.972) TCGA-98-A538-01 16 72141283 72141283 C T DHX38 Missense_Mutation p.T882I 0.44 deleterious(0.01) probably_damaging(0.944) TCGA-98-A538-01 16 75634059 75634059 T A ADAT1 3'UTR 0.45 TCGA-98-A538-01 16 77317777 77317777 G A ADAMTS18 3'UTR 0.44 TCGA-98-A538-01 16 81965191 81965191 G C PLCG2 Missense_Mutation p.D891H 0.40 deleterious(0.01) possibly_damaging(0.778) TCGA-98-A538-01 16 9858349 9858349 C T GRIN2A Missense_Mutation p.V1018M 0.18 tolerated(0.15) benign(0.036) TCGA-98-A538-01 17 10403975 10403975 G T MYH1 Missense_Mutation p.T1278K 0.35 tolerated(0.08) benign(0.115) TCGA-98-A538-01 17 11725759 11725759 C T DNAH9 Missense_Mutation p.T2952I 0.44 benign(0.001) TCGA-98-A538-01 17 11893869 11893869 T A ZNF18 Splice_Site p.X193_splice 0.64 TCGA-98-A538-01 17 18024978 18024978 G T MYO15A Missense_Mutation p.R955M 0.38 unknown(0) TCGA-98-A538-01 17 18395769 18395769 A T LGALS9C Splice_Site p.X225_splice 0.53 TCGA-98-A538-01 17 27013769 27013769 G C SUPT6H Missense_Mutation p.E888Q 0.17 deleterious(0.03) possibly_damaging(0.612) TCGA-98-A538-01 17 27893181 27893181 G C ABHD15 Missense_Mutation p.C268W 0.34 deleterious(0.01) probably_damaging(0.962) TCGA-98-A538-01 17 29222045 29222045 C A ATAD5 3'UTR 0.31 TCGA-98-A538-01 17 39324075 39324075 G C KRTAP4-3 Missense_Mutation p.S117C 0.17 deleterious(0.01) unknown(0) TCGA-98-A538-01 17 39324414 39324414 G A KRTAP4-3 Missense_Mutation p.S4F 0.22 deleterious(0.01) unknown(0) TCGA-98-A538-01 17 41244937 41244937 G A BRCA1 Missense_Mutation p.P871S 0.26 deleterious(0) benign(0.001) TCGA-98-A538-01 17 42338165 42338165 C A SLC4A1 Nonsense_Mutation p.E63* 0.44 TCGA-98-A538-01 17 4389723 4389723 G T SPNS3 Missense_Mutation p.R432L 0.33 deleterious(0.02) benign(0.114) TCGA-98-A538-01 17 4445950 4445950 G A MYBBP1A Silent p.L993L 0.45 TCGA-98-A538-01 17 53471802 53471802 C A MMD Missense_Mutation p.A204S 0.26 deleterious(0) probably_damaging(0.966) TCGA-98-A538-01 17 54526517 54526517 C A ANKFN1 Silent p.R396R 0.25 TCGA-98-A538-01 17 56352917 56352917 C A MPO Missense_Mutation p.G451W 0.62 deleterious(0) probably_damaging(1) TCGA-98-A538-01 17 57918628 57918628 G T VMP1 3'Flank 0.19 TCGA-98-A538-01 17 58270244 58270244 T C USP32 Missense_Mutation p.Q1161R 0.31 tolerated(0.34) probably_damaging(0.931) TCGA-98-A538-01 17 59093138 59093138 A T BCAS3 Missense_Mutation p.N505Y 0.27 tolerated(0.34) possibly_damaging(0.451) TCGA-98-A538-01 17 61611381 61611381 G T KCNH6 Silent p.T270T 0.31 TCGA-98-A538-01 17 61950632 61950632 G A CSH2 Silent p.A26A 0.03 TCGA-98-A538-01 17 6348525 6348526 - GG FAM64A Frame_Shift_Ins p.V33Gfs*9 0.33 TCGA-98-A538-01 17 66533497 66533497 G T FAM20A 3'UTR 0.12 TCGA-98-A538-01 17 72278019 72278019 G A DNAI2 Silent p.S21S 0.32 TCGA-98-A538-01 17 7228569 7228569 C A NEURL4 Missense_Mutation p.K530N 0.51 tolerated(0.13) probably_damaging(0.993) TCGA-98-A538-01 17 73947542 73947542 C T ACOX1 Missense_Mutation p.R354Q 0.26 tolerated(0.18) benign(0.028) TCGA-98-A538-01 17 7576853 7576853 C A TP53 Missense_Mutation p.Q331H 0.34 tolerated(0.13) benign(0.052) TCGA-98-A538-01 17 77755689 77755689 G A CBX2 Intron 0.16 TCGA-98-A538-01 17 7834389 7834389 G A TRAPPC1 Silent p.V83V 0.30 TCGA-98-A538-01 17 8048122 8048122 C A PER1 Missense_Mutation p.R803M 0.67 deleterious(0) possibly_damaging(0.526) TCGA-98-A538-01 17 80789374 80789374 G T ZNF750 Nonsense_Mutation p.Y319* 0.45 TCGA-98-A538-01 17 8644991 8644991 T A CCDC42 Splice_Site p.X99_splice 0.55 TCGA-98-A538-01 17 9583641 9583641 G A USP43 Missense_Mutation p.A355T 0.43 deleterious(0) probably_damaging(0.998) TCGA-98-A538-01 17 9676216 9676216 G A DHRS7C Silent p.L200L 0.38 TCGA-98-A538-01 18 14479178 14479178 T G CXADRP3 RNA 0.39 TCGA-98-A538-01 18 20877964 20877964 G T TMEM241 3'UTR 0.14 TCGA-98-A538-01 18 21111680 21111681 - T NPC1 3'UTR 0.22 TCGA-98-A538-01 18 21353542 21353542 G A LAMA3 Missense_Mutation p.G422S 0.45 benign(0.314) TCGA-98-A538-01 18 22805986 22805986 T C ZNF521 Silent p.G632G 0.43 TCGA-98-A538-01 18 28934729 28934729 G A DSG1 Missense_Mutation p.R857Q 0.43 tolerated(0.37) benign(0.067) TCGA-98-A538-01 18 34335156 34335156 G A FHOD3 Missense_Mutation p.R1261K 0.15 tolerated(1) benign(0.016) TCGA-98-A538-01 18 43484027 43484027 G A EPG5 Missense_Mutation p.T1462I 0.14 tolerated(0.21) benign(0.298) TCGA-98-A538-01 18 56202350 56202350 G C ALPK2 Missense_Mutation p.S1690C 0.48 tolerated(0.2) benign(0.312) TCGA-98-A538-01 18 58038683 58038683 C T MC4R Silent p.L300L 0.33 TCGA-98-A538-01 18 59813259 59813259 C T PIGN Splice_Site p.X269_splice 0.38 TCGA-98-A538-01 18 60036579 60036579 G T TNFRSF11A Missense_Mutation p.G477C 0.25 deleterious(0) probably_damaging(0.993) TCGA-98-A538-01 18 60036580 60036580 G T TNFRSF11A Missense_Mutation p.G477V 0.25 deleterious(0) probably_damaging(0.911) TCGA-98-A538-01 18 60242278 60242278 C A ZCCHC2 Nonsense_Mutation p.Y988* 0.47 TCGA-98-A538-01 18 67715347 67715347 G A RTTN Missense_Mutation p.L1801F 0.17 deleterious(0.03) probably_damaging(0.981) TCGA-98-A538-01 18 70526175 70526175 C A NETO1 Nonsense_Mutation p.G119* 0.38 TCGA-98-A538-01 18 74154275 74154275 C A ZNF516 Missense_Mutation p.G246W 0.46 deleterious(0) probably_damaging(1) TCGA-98-A538-01 19 12298858 12298858 G C ZNF136 3'UTR 0.12 TCGA-98-A538-01 19 1236079 1236079 C A C19orf26 Missense_Mutation p.M7I 0.47 tolerated_low_confidence(0.35) unknown(0) TCGA-98-A538-01 19 13869971 13869971 A T CCDC130 Missense_Mutation p.E153V 0.38 tolerated(0.3) benign(0.01) TCGA-98-A538-01 19 15587055 15587055 C A PGLYRP2 Missense_Mutation p.L142F 0.54 deleterious(0.05) possibly_damaging(0.835) TCGA-98-A538-01 19 15839296 15839296 C T OR10H2 Missense_Mutation p.S148F 0.51 deleterious(0.01) probably_damaging(0.987) TCGA-98-A538-01 19 18632887 18632887 C A ELL 5'UTR 0.56 TCGA-98-A538-01 19 18707794 18707794 C A CRLF1 Missense_Mutation p.V255L 0.43 tolerated(0.68) probably_damaging(0.988) TCGA-98-A538-01 19 19166681 19166681 G T ARMC6 Missense_Mutation p.G413W 0.56 deleterious(0) probably_damaging(1) TCGA-98-A538-01 19 22574690 22574690 A T ZNF98 Silent p.L449L 0.57 TCGA-98-A538-01 19 23329708 23329708 G C ZNF730 3'UTR 0.50 TCGA-98-A538-01 19 2403123 2403123 T A TMPRSS9 Nonsense_Mutation p.C166* 0.07 TCGA-98-A538-01 19 24310310 24310310 C G ZNF254 Nonsense_Mutation p.S503* 0.17 TCGA-98-A538-01 19 31769086 31769086 T C TSHZ3 Missense_Mutation p.Q538R 0.20 deleterious(0) probably_damaging(0.985) TCGA-98-A538-01 19 33355606 33355606 A T SLC7A9 Missense_Mutation p.V55E 0.16 deleterious(0) probably_damaging(0.998) TCGA-98-A538-01 19 37210036 37210036 A C ZNF567 Missense_Mutation p.H106P 0.32 tolerated(0.21) benign(0) TCGA-98-A538-01 19 37211211 37211211 G T ZNF567 Missense_Mutation p.G498W 0.37 deleterious(0) probably_damaging(1) TCGA-98-A538-01 19 37619771 37619771 G C ZNF420 Missense_Mutation p.Q626H 0.23 tolerated(0.5) benign(0.364) TCGA-98-A538-01 19 38958285 38958285 C T RYR1 Missense_Mutation p.R1072C 0.16 probably_damaging(0.999) TCGA-98-A538-01 19 43382300 43382300 G A PSG1 Silent p.Y65Y 0.12 TCGA-98-A538-01 19 45655350 45655350 C A NKPD1 Missense_Mutation p.R782L 0.14 tolerated_low_confidence(0.06) benign(0.186) TCGA-98-A538-01 19 46112768 46112768 G A EML2 3'Flank 0.38 TCGA-98-A538-01 19 47425188 47425188 G A ARHGAP35 Missense_Mutation p.D1086N 0.19 deleterious(0.03) probably_damaging(0.998) TCGA-98-A538-01 19 47425496 47425496 G C ARHGAP35 Missense_Mutation p.K1188N 0.11 deleterious(0.03) possibly_damaging(0.663) TCGA-98-A538-01 19 48342939 48342939 C A CRX Silent p.P205P 0.32 TCGA-98-A538-01 19 48800351 48800351 C - CCDC114 Frame_Shift_Del p.G632Efs*115 0.23 TCGA-98-A538-01 19 50393832 50393832 C A IL4I1 Missense_Mutation p.D289Y 0.20 deleterious(0.02) probably_damaging(0.986) TCGA-98-A538-01 19 50951560 50951560 T C MYBPC2 Missense_Mutation p.V462A 0.15 deleterious(0) possibly_damaging(0.803) TCGA-98-A538-01 19 51191265 51191265 C A SHANK1 Missense_Mutation p.M741I 0.31 benign(0.008) TCGA-98-A538-01 19 51301515 51301515 C A C19orf48 Missense_Mutation p.G64V 0.25 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-98-A538-01 19 53383816 53383816 C G ZNF320 3'UTR 0.11 TCGA-98-A538-01 19 53950490 53950490 G A ZNF761 RNA 0.15 TCGA-98-A538-01 19 54257285 54257285 C G MIR527 RNA 0.26 TCGA-98-A538-01 19 54966676 54966676 G T LENG8 Nonsense_Mutation p.E319* 0.29 TCGA-98-A538-01 19 55019248 55019248 T C LAIR2 Silent p.S71S 0.35 TCGA-98-A538-01 19 55179420 55179420 G T LILRB4 Missense_Mutation p.G433W 0.32 deleterious(0.01) benign(0.322) TCGA-98-A538-01 19 55179435 55179435 G T LILRB4 Nonsense_Mutation p.E438* 0.34 TCGA-98-A538-01 19 55247292 55247292 G T KIR3DL3 Missense_Mutation p.V354F 0.28 deleterious(0) benign(0.105) TCGA-98-A538-01 19 55264109 55264109 C A KIR2DL3 3'UTR 0.30 TCGA-98-A538-01 19 55610149 55610149 C G PPP1R12C Intron 0.24 TCGA-98-A538-01 19 56156519 56156519 G C ZNF581 Missense_Mutation p.W194C 0.15 deleterious(0.03) possibly_damaging(0.719) TCGA-98-A538-01 19 56369031 56369031 C T NLRP4 Intron 0.33 TCGA-98-A538-01 19 56372756 56372756 G C NLRP4 Missense_Mutation p.D621H 0.38 tolerated(0.11) possibly_damaging(0.535) TCGA-98-A538-01 19 56443517 56443517 C A NLRP13 Missense_Mutation p.R54L 0.35 tolerated(0.33) benign(0.048) TCGA-98-A538-01 19 56490859 56490859 G C NLRP8 Silent p.A992A 0.30 TCGA-98-A538-01 19 57932143 57932143 C A ZNF17 Missense_Mutation p.T428K 0.28 tolerated(0.83) benign(0.002) TCGA-98-A538-01 19 58049136 58049136 C G ZNF549 Missense_Mutation p.S255C 0.30 deleterious(0.04) benign(0.073) TCGA-98-A538-01 19 58101730 58101730 G A ZIK1 Missense_Mutation p.R184K 0.30 tolerated(0.14) benign(0.001) TCGA-98-A538-01 19 58437897 58437897 G A ZNF418 Missense_Mutation p.S551F 0.16 deleterious(0.03) probably_damaging(0.962) TCGA-98-A538-01 19 58806591 58806591 G T ZNF8 Missense_Mutation p.G473W 0.27 deleterious(0) probably_damaging(1) TCGA-98-A538-01 19 8808524 8808524 G A ACTL9 Silent p.Y176Y 0.53 TCGA-98-A538-01 19 9056538 9056538 C A MUC16 Missense_Mutation p.S10303I 0.59 benign(0.007) TCGA-98-A538-01 19 9061226 9061226 G A MUC16 Silent p.V8740V 0.51 TCGA-98-A538-01 1 10479708 10479708 G C PGD Missense_Mutation p.A452P 0.39 deleterious(0) probably_damaging(1) TCGA-98-A538-01 1 114184995 114184995 A T MAGI3 Missense_Mutation p.Q608L 0.25 tolerated(0.08) probably_damaging(0.999) TCGA-98-A538-01 1 114269160 114269160 A G PHTF1 Missense_Mutation p.V123A 0.08 tolerated(0.53) benign(0.028) TCGA-98-A538-01 1 12262033 12262033 C G TNFRSF1B Missense_Mutation p.P304A 0.24 tolerated(0.09) possibly_damaging(0.524) TCGA-98-A538-01 1 12414036 12414036 G T VPS13D Missense_Mutation p.C3146F 0.16 probably_damaging(0.991) TCGA-98-A538-01 1 12429607 12429607 G - VPS13D Frame_Shift_Del p.D3554Tfs*11 0.31 TCGA-98-A538-01 1 12711360 12711360 T A AADACL4 Splice_Site p.X129_splice 0.45 TCGA-98-A538-01 1 14068536 14068536 G T PRDM2 Missense_Mutation p.A90S 0.40 probably_damaging(1) TCGA-98-A538-01 1 144879304 144879304 G C PDE4DIP Silent p.L1382L 0.16 TCGA-98-A538-01 1 147380830 147380830 A G GJA8 Missense_Mutation p.K250E 0.42 tolerated(0.08) benign(0.013) TCGA-98-A538-01 1 150973743 150973743 G A FAM63A Nonsense_Mutation p.Q235* 0.13 TCGA-98-A538-01 1 151801925 151801925 G T RORC Missense_Mutation p.A17D 0.18 deleterious(0.02) benign(0.028) TCGA-98-A538-01 1 152057998 152057998 C T TCHHL1 Silent p.L720L 0.18 TCGA-98-A538-01 1 152081345 152081345 C T TCHH Missense_Mutation p.E1450K 0.17 unknown(0) TCGA-98-A538-01 1 152081973 152081973 A T TCHH Silent p.V1240V 0.34 TCGA-98-A538-01 1 152278244 152278244 G A FLG Missense_Mutation p.H3040Y 0.36 benign(0.001) TCGA-98-A538-01 1 152278245 152278245 G T FLG Silent p.S3039S 0.36 TCGA-98-A538-01 1 152671587 152671587 C G LCE2A Missense_Mutation p.S70R 0.35 tolerated(0.15) unknown(0) TCGA-98-A538-01 1 152733178 152733178 C A KPRP Missense_Mutation p.P372T 0.16 deleterious(0.01) probably_damaging(0.934) TCGA-98-A538-01 1 154026826 154026826 G T NUP210L Missense_Mutation p.Q1121K 0.35 tolerated(0.14) benign(0.403) TCGA-98-A538-01 1 156018429 156018429 G C UBQLN4 Missense_Mutation p.P255A 0.37 deleterious(0) probably_damaging(0.999) TCGA-98-A538-01 1 1563530 1563530 G C MIB2 Silent p.L719L 0.18 TCGA-98-A538-01 1 156622701 156622701 C A BCAN Intron 0.39 TCGA-98-A538-01 1 157771355 157771355 G T FCRL1 Missense_Mutation p.A300D 0.20 tolerated(0.61) benign(0.001) TCGA-98-A538-01 1 158061165 158061165 G T KIRREL Missense_Mutation p.E430D 0.13 tolerated(0.07) possibly_damaging(0.554) TCGA-98-A538-01 1 158151902 158151902 C G CD1D Missense_Mutation p.Q137E 0.20 tolerated(0.33) benign(0.025) TCGA-98-A538-01 1 158390051 158390051 G T OR10K2 Silent p.L202L 0.12 TCGA-98-A538-01 1 160604505 160604505 G T SLAMF1 Missense_Mutation p.P200T 0.12 tolerated(0.07) possibly_damaging(0.806) TCGA-98-A538-01 1 160851770 160851770 C T ITLN1 Missense_Mutation p.A128T 0.17 tolerated(0.09) benign(0.233) TCGA-98-A538-01 1 161068681 161068681 C G KLHDC9 Missense_Mutation p.A119G 0.29 tolerated(0.36) benign(0.206) TCGA-98-A538-01 1 161200648 161200648 G C NR1I3 Missense_Mutation p.T300S 0.38 deleterious(0) benign(0.328) TCGA-98-A538-01 1 168511327 168511327 G A XCL2 Missense_Mutation p.S27L 0.30 tolerated(1) benign(0.004) TCGA-98-A538-01 1 169256553 169256553 C G NME7 Missense_Mutation p.A248P 0.31 deleterious(0.01) possibly_damaging(0.671) TCGA-98-A538-01 1 169497164 169497164 G A F5 Missense_Mutation p.P1863L 0.23 deleterious(0) possibly_damaging(0.682) TCGA-98-A538-01 1 171076862 171076862 G T FMO3 Missense_Mutation p.G123V 0.23 deleterious(0) probably_damaging(0.988) TCGA-98-A538-01 1 173551038 173551038 C A SLC9C2 Missense_Mutation p.M250I 0.20 tolerated(0.07) benign(0.007) TCGA-98-A538-01 1 175365680 175365680 G A TNR Missense_Mutation p.H414Y 0.29 tolerated(1) benign(0.001) TCGA-98-A538-01 1 175365681 175365681 G T TNR Silent p.T413T 0.28 TCGA-98-A538-01 1 176564456 176564456 C T PAPPA2 Silent p.V572V 0.13 TCGA-98-A538-01 1 176564458 176564458 A T PAPPA2 Missense_Mutation p.H573L 0.12 tolerated(0.32) benign(0.004) TCGA-98-A538-01 1 177199248 177199248 G A BRINP2 Missense_Mutation p.R79H 0.19 deleterious(0.03) possibly_damaging(0.52) TCGA-98-A538-01 1 177250753 177250753 G C BRINP2 3'UTR 0.19 TCGA-98-A538-01 1 178834342 178834342 A T ANGPTL1 Silent p.S190S 0.11 TCGA-98-A538-01 1 182827315 182827315 G T DHX9 Silent p.L250L 0.36 TCGA-98-A538-01 1 182852705 182852705 G A DHX9 Silent p.L1065L 0.17 TCGA-98-A538-01 1 185815222 185815222 T C HMCN1 Silent p.Y111Y 0.16 TCGA-98-A538-01 1 186291693 186291693 G T TPR Missense_Mutation p.S2108Y 0.35 probably_damaging(0.982) TCGA-98-A538-01 1 197094046 197094046 C T ASPM Missense_Mutation p.R1041K 0.14 deleterious(0.02) benign(0.163) TCGA-98-A538-01 1 20009400 20009400 G T TMCO4 3'UTR 0.36 TCGA-98-A538-01 1 201030512 201030512 G A CACNA1S Silent p.I1046I 0.16 TCGA-98-A538-01 1 203690464 203690464 C A ATP2B4 Nonsense_Mutation p.S913* 0.21 TCGA-98-A538-01 1 213032054 213032054 G T FLVCR1 Missense_Mutation p.G87V 0.40 tolerated(0.07) benign(0.157) TCGA-98-A538-01 1 216108069 216108069 C - USH2A Frame_Shift_Del p.V2397Cfs*16 0.24 TCGA-98-A538-01 1 217604468 217604468 C A GPATCH2 3'UTR 0.40 TCGA-98-A538-01 1 221053216 221053216 T A HLX Missense_Mutation p.L6Q 0.27 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-98-A538-01 1 224455803 224455803 T A NVL Silent p.L705L 0.35 TCGA-98-A538-01 1 226016425 226016425 G A EPHX1 Splice_Site 0.52 TCGA-98-A538-01 1 227935746 227935746 G A SNAP47 Silent p.L148L 0.49 TCGA-98-A538-01 1 229568504 229568504 C A ACTA1 Nonsense_Mutation p.E85* 0.28 TCGA-98-A538-01 1 229568505 229568505 C A ACTA1 Missense_Mutation p.M84I 0.26 deleterious_low_confidence(0.02) benign(0.076) TCGA-98-A538-01 1 229568744 229568744 G T ACTA1 Missense_Mutation p.P40H 0.23 deleterious_low_confidence(0.01) probably_damaging(0.985) TCGA-98-A538-01 1 230461072 230461072 C T PGBD5 Missense_Mutation p.D386N 0.12 tolerated(0.14) possibly_damaging(0.79) TCGA-98-A538-01 1 231411903 231411903 G A GNPAT Missense_Mutation p.V654M 0.34 deleterious(0.01) possibly_damaging(0.736) TCGA-98-A538-01 1 23417739 23417739 G A LUZP1 Missense_Mutation p.R1006W 0.33 deleterious(0.02) benign(0.057) TCGA-98-A538-01 1 236306038 236306038 C G GPR137B Missense_Mutation p.P39R 0.35 deleterious(0.02) probably_damaging(0.987) TCGA-98-A538-01 1 237814781 237814781 C A RYR2 Missense_Mutation p.H2602N 0.20 benign(0.039) TCGA-98-A538-01 1 237949314 237949314 A T RYR2 Nonsense_Mutation p.K4436* 0.55 TCGA-98-A538-01 1 238090699 238090699 C A RP11-193H5.1 RNA 0.33 TCGA-98-A538-01 1 240370363 240370363 G C FMN2 Missense_Mutation p.E751Q 0.21 unknown(0) TCGA-98-A538-01 1 244580927 244580927 C T ADSS Intron 0.22 TCGA-98-A538-01 1 24666158 24666158 C G GRHL3 Missense_Mutation p.A318G 0.31 deleterious(0.02) probably_damaging(0.988) TCGA-98-A538-01 1 247836191 247836191 G - OR13G1 Frame_Shift_Del p.L52Cfs*10 0.29 TCGA-98-A538-01 1 247902757 247902757 C G OR14K1 Missense_Mutation p.P281A 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-98-A538-01 1 247920927 247920927 C A OR1C1 Missense_Mutation p.S261I 0.18 tolerated(0.23) benign(0.202) TCGA-98-A538-01 1 248059126 248059126 C A OR2W3 Missense_Mutation p.Q80K 0.38 deleterious(0.01) possibly_damaging(0.742) TCGA-98-A538-01 1 248129184 248129184 G T OR2AK2 Missense_Mutation p.C184F 0.19 deleterious(0) probably_damaging(0.987) TCGA-98-A538-01 1 24840969 24840969 T A RCAN3 Nonsense_Mutation p.L36* 0.33 TCGA-98-A538-01 1 248616441 248616441 C T OR2T2 Silent p.L115L 0.12 TCGA-98-A538-01 1 248685672 248685672 C T OR2G6 Missense_Mutation p.S242L 0.23 deleterious(0.05) benign(0.127) TCGA-98-A538-01 1 248737938 248737938 A T OR2T34 Missense_Mutation p.L41M 0.11 deleterious(0.04) possibly_damaging(0.796) TCGA-98-A538-01 1 26288293 26288293 C A PAFAH2 3'UTR 0.30 TCGA-98-A538-01 1 26368218 26368218 T A SLC30A2 Nonsense_Mutation p.R271* 0.16 TCGA-98-A538-01 1 26368219 26368219 C A SLC30A2 Silent p.L270L 0.16 TCGA-98-A538-01 1 28607288 28607288 G A SESN2 Missense_Mutation p.R473H 0.13 deleterious(0.01) probably_damaging(1) TCGA-98-A538-01 1 29185800 29185800 G A OPRD1 Missense_Mutation p.V188M 0.11 tolerated(0.11) benign(0.258) TCGA-98-A538-01 1 32202269 32202269 C - BAI2 Frame_Shift_Del p.C1012Sfs*79 0.16 TCGA-98-A538-01 1 32207081 32207081 C G BAI2 Splice_Site p.X563_splice 0.27 TCGA-98-A538-01 1 34087767 34087767 T A CSMD2 Missense_Mutation p.T1903S 0.38 deleterious(0.03) benign(0.019) TCGA-98-A538-01 1 34191077 34191077 C A CSMD2 Silent p.A816A 0.36 TCGA-98-A538-01 1 36060155 36060155 A G TFAP2E Missense_Mutation p.T403A 0.18 deleterious(0.04) possibly_damaging(0.72) TCGA-98-A538-01 1 38030674 38030674 T C DNALI1 3'UTR 0.32 TCGA-98-A538-01 1 38511364 38511364 T G POU3F1 Missense_Mutation p.K351T 0.36 deleterious(0) possibly_damaging(0.625) TCGA-98-A538-01 1 48764427 48764427 T A SPATA6 Missense_Mutation p.K475N 0.29 deleterious(0.01) benign(0.154) TCGA-98-A538-01 1 48865034 48865034 C T SPATA6 Missense_Mutation p.V257M 0.30 deleterious(0) probably_damaging(0.994) TCGA-98-A538-01 1 53287194 53287194 C T ZYG11B Missense_Mutation p.H710Y 0.13 deleterious(0.05) benign(0.083) TCGA-98-A538-01 1 55139767 55139767 G T MROH7 Missense_Mutation p.G627C 0.13 tolerated(0.1) probably_damaging(0.997) TCGA-98-A538-01 1 57341755 57341755 C A C8A Missense_Mutation p.L113I 0.18 deleterious(0) probably_damaging(0.994) TCGA-98-A538-01 1 67303459 67303459 A C WDR78 Nonsense_Mutation p.Y505* 0.12 TCGA-98-A538-01 1 70541929 70541929 G T LRRC7 Missense_Mutation p.R1429L 0.12 deleterious(0.04) possibly_damaging(0.651) TCGA-98-A538-01 1 74670242 74670242 G A FPGT Missense_Mutation p.E171K 0.18 deleterious(0.02) possibly_damaging(0.511) TCGA-98-A538-01 1 75005920 75005920 C A TNNI3K Missense_Mutation p.A886D 0.26 tolerated_low_confidence(0.15) benign(0.023) TCGA-98-A538-01 1 75037754 75037754 C T C1orf173 Missense_Mutation p.G1214R 0.17 deleterious(0.05) benign(0.032) TCGA-98-A538-01 1 76253248 76253248 G T RABGGTB Missense_Mutation p.A24S 0.13 deleterious(0.04) benign(0.023) TCGA-98-A538-01 1 76365327 76365327 C T MSH4 Missense_Mutation p.S852L 0.12 deleterious(0.02) possibly_damaging(0.544) TCGA-98-A538-01 1 82456952 82456952 G T LPHN2 3'UTR 0.21 TCGA-98-A538-01 1 86836773 86836773 T G ODF2L Missense_Mutation p.E328D 0.20 deleterious(0.02) benign(0.22) TCGA-98-A538-01 1 86836784 86836784 T G ODF2L Missense_Mutation p.N325H 0.19 deleterious(0) probably_damaging(0.978) TCGA-98-A538-01 1 880155 880155 C A NOC2L Silent p.G723G 0.25 TCGA-98-A538-01 1 91790237 91790237 C G HFM1 Missense_Mutation p.D808H 0.19 deleterious(0.05) possibly_damaging(0.738) TCGA-98-A538-01 1 94497520 94497520 G T ABCA4 Silent p.P1314P 0.19 TCGA-98-A538-01 1 99771664 99771664 G C LPPR4 Missense_Mutation p.V464L 0.22 tolerated(0.07) possibly_damaging(0.459) TCGA-98-A538-01 20 17640733 17640733 C G RRBP1 Missense_Mutation p.K140N 0.24 deleterious(0.01) possibly_damaging(0.607) TCGA-98-A538-01 20 21687428 21687428 G C PAX1 Silent p.S213S 0.21 TCGA-98-A538-01 20 23807178 23807178 A T CST2 Missense_Mutation p.N40K 0.17 tolerated(0.05) benign(0.095) TCGA-98-A538-01 20 2847249 2847249 G T VPS16 3'UTR 0.28 TCGA-98-A538-01 20 2847250 2847250 G T VPS16 3'UTR 0.29 TCGA-98-A538-01 20 30064566 30064566 G A REM1 Silent p.R106R 0.27 TCGA-98-A538-01 20 31611280 31611280 A G BPIFB2 3'UTR 0.45 TCGA-98-A538-01 20 3557593 3557593 G T ATRN Missense_Mutation p.D768Y 0.13 deleterious(0.01) possibly_damaging(0.691) TCGA-98-A538-01 20 3673354 3673354 C G SIGLEC1 Missense_Mutation p.A1282P 0.32 deleterious(0.01) benign(0.18) TCGA-98-A538-01 20 37203683 37203683 C T RALGAPB 3'UTR 0.22 TCGA-98-A538-01 20 42354917 42354917 G A GTSF1L Missense_Mutation p.P140S 0.12 tolerated(0.39) benign(0.007) TCGA-98-A538-01 20 44334526 44334526 C T WFDC13 Silent p.V88V 0.31 TCGA-98-A538-01 20 46365537 46365537 T G SULF2 Missense_Mutation p.N109H 0.41 deleterious(0) probably_damaging(1) TCGA-98-A538-01 20 52198332 52198332 G T ZNF217 Nonsense_Mutation p.S345* 0.36 TCGA-98-A538-01 20 57768847 57768847 G T ZNF831 Missense_Mutation p.A925S 0.45 tolerated(0.35) benign(0.368) TCGA-98-A538-01 20 61287976 61287976 A C SLCO4A1 Missense_Mutation p.Q57P 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.451) TCGA-98-A538-01 20 61513373 61513373 G A DIDO1 Missense_Mutation p.S1312L 0.16 benign(0.335) TCGA-98-A538-01 21 10862958 10862958 C A IGHV1OR21-1 Missense_Mutation p.A85D 0.24 tolerated(0.11) benign(0.001) TCGA-98-A538-01 21 11047507 11047507 C T BAGE2 RNA 0.03 TCGA-98-A538-01 21 30969081 30969081 C T GRIK1-AS2 3'UTR 0.33 TCGA-98-A538-01 21 31802720 31802720 C A KRTAP13-4 Missense_Mutation p.L43M 0.50 deleterious(0) probably_damaging(0.988) TCGA-98-A538-01 21 45999837 45999837 G C KRTAP10-5 Missense_Mutation p.P207A 0.35 deleterious(0.02) probably_damaging(0.988) TCGA-98-A538-01 22 16279258 16279258 T A POTEH Missense_Mutation p.Q322L 0.05 tolerated(0.17) probably_damaging(0.932) TCGA-98-A538-01 22 18918709 18918709 C A PRODH Silent p.L92L 0.12 TCGA-98-A538-01 22 21337366 21337366 G T LZTR1 Missense_Mutation p.G84V 0.19 deleterious(0) probably_damaging(1) TCGA-98-A538-01 22 21989255 21989255 G A CCDC116 Silent p.L301L 0.09 TCGA-98-A538-01 22 29709827 29709827 A C RASL10A Intron 0.10 TCGA-98-A538-01 22 29833731 29833731 C T RFPL1 5'Flank 0.31 TCGA-98-A538-01 22 30951193 30951193 C T GAL3ST1 Missense_Mutation p.R340H 0.27 deleterious(0.04) benign(0.009) TCGA-98-A538-01 22 31583080 31583080 G C RNF185 5'UTR 0.26 TCGA-98-A538-01 22 32802742 32802742 T C RTCB Missense_Mutation p.I83V 0.40 tolerated(0.31) benign(0.019) TCGA-98-A538-01 22 36705401 36705401 T C MYH9 Missense_Mutation p.D590G 0.35 possibly_damaging(0.813) TCGA-98-A538-01 22 37771425 37771425 C G ELFN2 Silent p.P50P 0.36 TCGA-98-A538-01 22 38120714 38120714 A G TRIOBP Silent p.Q717Q 0.24 TCGA-98-A538-01 22 39530576 39530576 C T CBX7 Missense_Mutation p.R143Q 0.25 tolerated(0.1) benign(0.118) TCGA-98-A538-01 22 41752477 41752477 C T ZC3H7B Silent p.I838I 0.18 TCGA-98-A538-01 22 42177780 42177780 T A MEI1 Silent p.T1006T 0.48 TCGA-98-A538-01 22 46652886 46652886 C A PKDREJ Missense_Mutation p.G2112C 0.14 deleterious(0.01) probably_damaging(0.965) TCGA-98-A538-01 22 46656116 46656116 G T PKDREJ Missense_Mutation p.P1035H 0.37 deleterious(0) probably_damaging(0.994) TCGA-98-A538-01 22 46704667 46704667 G T GTSE1 Missense_Mutation p.A197S 0.45 tolerated(0.31) benign(0.436) TCGA-98-A538-01 2 100266122 100266122 C A AFF3 Missense_Mutation p.A409S 0.13 tolerated(0.28) possibly_damaging(0.456) TCGA-98-A538-01 2 110036069 110036069 G T SH3RF3 Silent p.T458T 0.33 TCGA-98-A538-01 2 112944936 112944936 G T FBLN7 Silent p.R391R 0.34 TCGA-98-A538-01 2 116593786 116593786 T A DPP10 Missense_Mutation p.F672L 0.37 tolerated(0.17) possibly_damaging(0.879) TCGA-98-A538-01 2 125521681 125521681 A T CNTNAP5 Silent p.L829L 0.34 TCGA-98-A538-01 2 128477266 128477266 C A WDR33 Missense_Mutation p.G778V 0.29 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-98-A538-01 2 132257914 132257914 C T AC093838.4 RNA 0.13 TCGA-98-A538-01 2 135744749 135744749 G T MAP3K19 Missense_Mutation p.H565N 0.16 deleterious(0.02) possibly_damaging(0.802) TCGA-98-A538-01 2 135920135 135920135 A G RAB3GAP1 Missense_Mutation p.Y767C 0.32 deleterious(0) possibly_damaging(0.758) TCGA-98-A538-01 2 139428597 139428597 G T NXPH2 Silent p.V230V 0.32 TCGA-98-A538-01 2 144764757 144764757 A C GTDC1 Silent p.P289P 0.16 TCGA-98-A538-01 2 145156970 145156970 G C ZEB2 Missense_Mutation p.P595R 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-98-A538-01 2 155555740 155555740 C T KCNJ3 Silent p.I151I 0.35 TCGA-98-A538-01 2 15693553 15693553 A T NBAS Missense_Mutation p.I111N 0.14 deleterious(0) probably_damaging(0.959) TCGA-98-A538-01 2 157182359 157182359 A T NR4A2 Missense_Mutation p.L565H 0.17 deleterious(0) probably_damaging(0.995) TCGA-98-A538-01 2 157182512 157182512 T A NR4A2 Missense_Mutation p.E514V 0.32 deleterious(0) benign(0.278) TCGA-98-A538-01 2 165364995 165364995 C T GRB14 Silent p.T331T 0.22 TCGA-98-A538-01 2 166179681 166179681 C T SCN2A Missense_Mutation p.R563C 0.26 deleterious(0.01) probably_damaging(0.977) TCGA-98-A538-01 2 166234124 166234124 G T SCN2A Missense_Mutation p.W1424C 0.30 deleterious(0) probably_damaging(1) TCGA-98-A538-01 2 168100329 168100329 G T XIRP2 Missense_Mutation p.K809N 0.36 probably_damaging(0.984) TCGA-98-A538-01 2 170416916 170416916 C T FASTKD1 Missense_Mutation p.G318R 0.17 tolerated(0.06) benign(0.263) TCGA-98-A538-01 2 176972177 176972177 C A HOXD11 Missense_Mutation p.P32T 0.39 tolerated(0.1) benign(0.214) TCGA-98-A538-01 2 176972178 176972178 C A HOXD11 Missense_Mutation p.P32H 0.38 deleterious(0) probably_damaging(0.982) TCGA-98-A538-01 2 177036543 177036543 G T HOXD3 Silent p.V280V 0.36 TCGA-98-A538-01 2 179412983 179412983 C T TTN Missense_Mutation p.D31124N 0.12 TCGA-98-A538-01 2 179418378 179418378 G A TTN Missense_Mutation p.S29785F 0.39 TCGA-98-A538-01 2 179437289 179437289 G T TTN Missense_Mutation p.Q24524K 0.18 TCGA-98-A538-01 2 179587178 179587178 C T TTN Missense_Mutation p.A7446T 0.36 TCGA-98-A538-01 2 179590293 179590293 C A TTN Missense_Mutation p.A6880S 0.12 TCGA-98-A538-01 2 179611332 179611332 C A TTN Intron 0.20 TCGA-98-A538-01 2 179667049 179667049 C T TTN Silent p.V37V 0.42 TCGA-98-A538-01 2 180634273 180634273 G T ZNF385B Silent p.P70P 0.26 TCGA-98-A538-01 2 197531494 197531494 G T CCDC150 Missense_Mutation p.A272S 0.32 tolerated(0.14) benign(0.001) TCGA-98-A538-01 2 202493981 202493981 C A TMEM237 Missense_Mutation p.A281S 0.12 tolerated(0.11) possibly_damaging(0.792) TCGA-98-A538-01 2 207345997 207345997 C T ADAM23 Silent p.F158F 0.26 TCGA-98-A538-01 2 207482415 207482415 A C ADAM23 3'UTR 0.38 TCGA-98-A538-01 2 209358304 209358304 C A PTH2R Missense_Mutation p.L525I 0.15 tolerated(0.29) benign(0.001) TCGA-98-A538-01 2 211464199 211464199 C A CPS1 Missense_Mutation p.T494N 0.17 tolerated(0.22) probably_damaging(0.999) TCGA-98-A538-01 2 21255365 21255365 G A APOB Missense_Mutation p.P405S 0.26 probably_damaging(0.999) TCGA-98-A538-01 2 219892517 219892517 G A CCDC108 Missense_Mutation p.T689M 0.24 deleterious(0.04) probably_damaging(0.93) TCGA-98-A538-01 2 219900296 219900296 C G CCDC108 Missense_Mutation p.E150Q 0.18 tolerated(0.24) benign(0.373) TCGA-98-A538-01 2 220309673 220309673 G T SPEG Missense_Mutation p.G202V 0.17 benign(0.166) TCGA-98-A538-01 2 220414076 220414076 G C TMEM198 Silent p.P315P 0.11 TCGA-98-A538-01 2 223084889 223084889 G C PAX3 Missense_Mutation p.N381K 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-98-A538-01 2 230231738 230231738 G C DNER Missense_Mutation p.I651M 0.22 deleterious(0.01) benign(0.223) TCGA-98-A538-01 2 233271821 233271821 C A ALPPL2 Missense_Mutation p.A41D 0.26 tolerated(0.47) benign(0.003) TCGA-98-A538-01 2 234345088 234345088 G C DGKD Splice_Site p.X273_splice 0.37 TCGA-98-A538-01 2 234652515 234652515 G T UGT1A10 Intron 0.38 TCGA-98-A538-01 2 238283536 238283536 G T COL6A3 Silent p.R1066R 0.30 TCGA-98-A538-01 2 24087772 24087772 C A ATAD2B Missense_Mutation p.G404V 0.71 deleterious(0) probably_damaging(1) TCGA-98-A538-01 2 242151561 242151561 C T ANO7 Silent p.F592F 0.19 TCGA-98-A538-01 2 242179159 242179159 A C HDLBP Missense_Mutation p.L823W 0.17 deleterious(0) probably_damaging(1) TCGA-98-A538-01 2 242179175 242179175 G C HDLBP Missense_Mutation p.R818G 0.17 deleterious(0) possibly_damaging(0.746) TCGA-98-A538-01 2 242572891 242572891 C A THAP4 Silent p.G227G 0.15 TCGA-98-A538-01 2 26684791 26684791 T A OTOF Missense_Mutation p.Q1769L 0.24 tolerated(1) benign(0.097) TCGA-98-A538-01 2 26685045 26685045 C A OTOF Nonsense_Mutation p.E1733* 0.29 TCGA-98-A538-01 2 27320496 27320496 G T KHK Missense_Mutation p.Q181H 0.18 deleterious(0.04) possibly_damaging(0.581) TCGA-98-A538-01 2 27604559 27604559 C G PPM1G Missense_Mutation p.E516D 0.22 tolerated_low_confidence(0.71) benign(0.076) TCGA-98-A538-01 2 28531193 28531193 G T BRE Intron 0.51 TCGA-98-A538-01 2 30966343 30966343 G A CAPN13 Silent p.L451L 0.19 TCGA-98-A538-01 2 40656547 40656547 C A SLC8A1 Missense_Mutation p.D292Y 0.31 deleterious(0) probably_damaging(0.947) TCGA-98-A538-01 2 44145530 44145530 G T LRPPRC Missense_Mutation p.N968K 0.15 deleterious(0.02) possibly_damaging(0.587) TCGA-98-A538-01 2 46985754 46985754 A T SOCS5 Missense_Mutation p.N29Y 0.10 deleterious_low_confidence(0.01) benign(0.034) TCGA-98-A538-01 2 47357114 47357114 G T C2orf61 Missense_Mutation p.T162K 0.11 tolerated(0.18) benign(0.156) TCGA-98-A538-01 2 54164664 54164664 C G PSME4 Missense_Mutation p.D187H 0.12 tolerated(0.1) benign(0.322) TCGA-98-A538-01 2 56145112 56145112 G C EFEMP1 Missense_Mutation p.L69V 0.20 deleterious(0) probably_damaging(0.999) TCGA-98-A538-01 2 66670085 66670085 G A MEIS1 Missense_Mutation p.G179R 0.42 deleterious(0) probably_damaging(1) TCGA-98-A538-01 2 67632317 67632317 T C ETAA1 Missense_Mutation p.F835L 0.24 tolerated(0.58) benign(0.027) TCGA-98-A538-01 2 70315328 70315328 G A PCBP1 Silent p.V151V 0.12 TCGA-98-A538-01 2 77748820 77748820 C A LRRTM4 5'UTR 0.30 TCGA-98-A538-01 2 79254997 79254997 G T REG3G Missense_Mutation p.W133L 0.33 deleterious(0) probably_damaging(0.999) TCGA-98-A538-01 2 79385885 79385885 G T REG3A Silent p.P29P 0.17 TCGA-98-A538-01 2 89976401 89976401 G C IGKV2D-30 Missense_Mutation p.G91A 0.14 deleterious(0.02) benign(0.272) TCGA-98-A538-01 2 90260064 90260064 C G IGKV1D-8 Missense_Mutation p.A56G 0.15 tolerated(0.18) benign(0.012) TCGA-98-A538-01 2 98844728 98844728 C T VWA3B Nonsense_Mutation p.Q695* 0.22 TCGA-98-A538-01 3 100277396 100277396 C G TMEM45A Nonsense_Mutation p.S184* 0.18 TCGA-98-A538-01 3 101573448 101573448 G T NFKBIZ Missense_Mutation p.G455V 0.10 deleterious(0) probably_damaging(0.999) TCGA-98-A538-01 3 10291169 10291169 G T TATDN2 Silent p.G95G 0.40 TCGA-98-A538-01 3 109046681 109046681 A T DPPA4 3'UTR 0.35 TCGA-98-A538-01 3 119427437 119427437 G T MAATS1 Splice_Site p.X120_splice 0.38 TCGA-98-A538-01 3 121980807 121980807 C G CASR Missense_Mutation p.Q309E 0.11 tolerated(1) benign(0) TCGA-98-A538-01 3 122811227 122811227 G T PDIA5 Missense_Mutation p.R65S 0.49 tolerated(0.35) benign(0.005) TCGA-98-A538-01 3 123071293 123071293 C - ADCY5 Frame_Shift_Del p.E424Rfs*21 0.33 TCGA-98-A538-01 3 123426598 123426598 C G MYLK Intron 0.45 TCGA-98-A538-01 3 124103832 124103832 G T KALRN Missense_Mutation p.Q635H 0.14 tolerated(0.07) unknown(0) TCGA-98-A538-01 3 126229594 126229594 T A UROC1 Missense_Mutation p.Q57L 0.44 deleterious(0) benign(0.076) TCGA-98-A538-01 3 126915967 126915967 G A C3orf56 Missense_Mutation p.G147R 0.15 tolerated(0.86) benign(0) TCGA-98-A538-01 3 130202950 130202950 C G COL6A5 3'UTR 0.32 TCGA-98-A538-01 3 134851777 134851777 A T EPHB1 Missense_Mutation p.S395C 0.32 deleterious(0) possibly_damaging(0.762) TCGA-98-A538-01 3 137881308 137881308 G T DBR1 Missense_Mutation p.P353Q 0.10 tolerated(0.14) benign(0.324) TCGA-98-A538-01 3 142075838 142075838 A T XRN1 Missense_Mutation p.H1196Q 0.55 tolerated(0.54) benign(0) TCGA-98-A538-01 3 147128223 147128223 C T ZIC1 Silent p.G108G 0.17 TCGA-98-A538-01 3 14861771 14861771 G C FGD5 Missense_Mutation p.G398A 0.48 tolerated_low_confidence(0.06) benign(0.058) TCGA-98-A538-01 3 14862939 14862939 C A FGD5 Silent p.I787I 0.48 TCGA-98-A538-01 3 151532045 151532045 G C AADAC Missense_Mutation p.R32T 0.13 deleterious(0.04) benign(0.011) TCGA-98-A538-01 3 155200276 155200276 T - PLCH1 Frame_Shift_Del p.N1188Mfs*12 0.12 TCGA-98-A538-01 3 160395717 160395717 T - ARL14 3'UTR 0.33 TCGA-98-A538-01 3 167033541 167033541 C T ZBBX Missense_Mutation p.R424Q 0.08 tolerated(1) benign(0) TCGA-98-A538-01 3 180324072 180324072 G - TTC14 Frame_Shift_Del p.G321Dfs*7 0.24 TCGA-98-A538-01 3 180669151 180669151 G T FXR1 Silent p.L232L 0.57 TCGA-98-A538-01 3 183995733 183995733 A T ECE2 Missense_Mutation p.S285C 0.62 deleterious(0.04) probably_damaging(0.996) TCGA-98-A538-01 3 18462322 18462322 C A SATB1 Silent p.G46G 0.46 TCGA-98-A538-01 3 33650076 33650076 C T CLASP2 Silent p.Q478Q 0.17 TCGA-98-A538-01 3 35780908 35780908 C A ARPP21 Missense_Mutation p.L583I 0.31 tolerated(0.52) benign(0.026) TCGA-98-A538-01 3 42299638 42299638 C A CCK Missense_Mutation p.W100C 0.40 deleterious(0) probably_damaging(0.978) TCGA-98-A538-01 3 49161425 49161425 C T LAMB2 Missense_Mutation p.R1178H 0.06 deleterious(0) probably_damaging(0.998) TCGA-98-A538-01 3 49948222 49948222 G A MON1A Missense_Mutation p.L334F 0.59 tolerated(0.05) possibly_damaging(0.897) TCGA-98-A538-01 3 69221055 69221055 C A FRMD4B Missense_Mutation p.R1021I 0.48 deleterious_low_confidence(0.05) benign(0.073) TCGA-98-A538-01 3 85961647 85961647 C G CADM2 Silent p.S211S 0.18 TCGA-98-A538-01 3 87276661 87276661 C T CHMP2B 5'UTR 0.25 TCGA-98-A538-01 3 95374192 95374192 T C MTHFD2P1 RNA 0.55 TCGA-98-A538-01 3 98002094 98002094 A G OR5H2 Silent p.A121A 0.40 TCGA-98-A538-01 3 99536822 99536822 A T CMSS1 5'UTR 0.13 TCGA-98-A538-01 4 100201359 100201359 G C ADH1A Silent p.L302L 0.24 TCGA-98-A538-01 4 10077001 10077001 C A WDR1 3'UTR 0.16 TCGA-98-A538-01 4 104066268 104066268 T A CENPE Missense_Mutation p.Q1599L 0.23 benign(0.048) TCGA-98-A538-01 4 106604428 106604428 G C INTS12 Missense_Mutation p.S284W 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-98-A538-01 4 111553624 111553624 G T PITX2 Missense_Mutation p.A20E 0.28 tolerated_low_confidence(0.54) benign(0.002) TCGA-98-A538-01 4 113568189 113568189 G T LARP7 Splice_Site p.X192_splice 0.21 TCGA-98-A538-01 4 114095617 114095617 C G ANK2 Missense_Mutation p.L44V 0.22 benign(0.06) TCGA-98-A538-01 4 114238862 114238862 G C ANK2 Splice_Site p.X898_splice 0.24 TCGA-98-A538-01 4 119631327 119631327 G A METTL14 Missense_Mutation p.R414K 0.21 tolerated(0.95) unknown(0) TCGA-98-A538-01 4 119948053 119948053 C G SYNPO2 Missense_Mutation p.R177G 0.17 tolerated(0.43) benign(0.001) TCGA-98-A538-01 4 119951108 119951108 G T SYNPO2 Missense_Mutation p.G393V 0.16 deleterious(0) probably_damaging(1) TCGA-98-A538-01 4 122853867 122853867 G T TRPC3 Silent p.A182A 0.18 TCGA-98-A538-01 4 123664202 123664202 G A BBS12 Missense_Mutation p.M385I 0.28 tolerated(0.4) benign(0.006) TCGA-98-A538-01 4 134071929 134071929 G C PCDH10 Missense_Mutation p.V212L 0.31 tolerated_low_confidence(0.3) benign(0) TCGA-98-A538-01 4 134073809 134073809 G A PCDH10 Silent p.K838K 0.14 TCGA-98-A538-01 4 13578470 13578470 C T BOD1L1 Silent p.E3010E 0.19 TCGA-98-A538-01 4 146686773 146686773 C A ZNF827 Missense_Mutation p.G993V 0.19 tolerated(0.32) benign(0.046) TCGA-98-A538-01 4 146686774 146686774 C A ZNF827 Missense_Mutation p.G993W 0.19 deleterious(0.03) possibly_damaging(0.64) TCGA-98-A538-01 4 159092589 159092589 G A FAM198B 5'UTR 0.25 TCGA-98-A538-01 4 160264272 160264272 T G RAPGEF2 Missense_Mutation p.S859R 0.19 deleterious(0.01) possibly_damaging(0.649) TCGA-98-A538-01 4 163032464 163032464 C A FSTL5 Missense_Mutation p.G29C 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.641) TCGA-98-A538-01 4 169315622 169315622 A T DDX60L Silent p.L1268L 0.15 TCGA-98-A538-01 4 171010821 171010821 G A AADAT Silent p.I7I 0.24 TCGA-98-A538-01 4 175598433 175598433 C A GLRA3 Silent p.T241T 0.24 TCGA-98-A538-01 4 178355583 178355583 T G AGA Silent p.A253A 0.19 TCGA-98-A538-01 4 183635310 183635310 C G TENM3 Missense_Mutation p.C764W 0.28 deleterious(0) possibly_damaging(0.869) TCGA-98-A538-01 4 189060677 189060677 G T TRIML1 5'UTR 0.20 TCGA-98-A538-01 4 20706381 20706381 G T PACRGL Missense_Mutation p.A51S 0.16 tolerated(0.12) benign(0.035) TCGA-98-A538-01 4 2343281 2343281 G A ZFYVE28 Missense_Mutation p.P81L 0.11 deleterious(0.02) possibly_damaging(0.691) TCGA-98-A538-01 4 24534539 24534539 C A DHX15 Missense_Mutation p.R683M 0.23 deleterious(0.03) probably_damaging(0.95) TCGA-98-A538-01 4 2990491 2990491 A G GRK4 Missense_Mutation p.I62M 0.19 deleterious(0) probably_damaging(0.993) TCGA-98-A538-01 4 30732447 30732447 C A PCDH7 Intron 0.17 TCGA-98-A538-01 4 48507627 48507627 T A FRYL Silent p.L2800L 0.14 TCGA-98-A538-01 4 48546913 48546913 C A FRYL Missense_Mutation p.G1763V 0.19 deleterious(0.01) probably_damaging(1) TCGA-98-A538-01 4 48994051 48994051 C G CWH43 Missense_Mutation p.S152C 0.21 deleterious(0.01) possibly_damaging(0.866) TCGA-98-A538-01 4 55976584 55976584 G A KDR Missense_Mutation p.S414F 0.14 deleterious(0.01) possibly_damaging(0.579) TCGA-98-A538-01 4 6087187 6087187 G A JAKMIP1 Missense_Mutation p.P265L 0.21 deleterious(0.01) benign(0.282) TCGA-98-A538-01 4 65155434 65155434 G T TECRL Missense_Mutation p.H276N 0.41 tolerated(0.18) benign(0.022) TCGA-98-A538-01 4 65274955 65274955 G T TECRL Missense_Mutation p.L39I 0.39 tolerated_low_confidence(0.06) benign(0.008) TCGA-98-A538-01 4 66217285 66217285 A T EPHA5 Missense_Mutation p.L777H 0.17 deleterious(0) probably_damaging(0.999) TCGA-98-A538-01 4 66356203 66356203 G T EPHA5 Missense_Mutation p.L432I 0.41 tolerated(0.07) possibly_damaging(0.5) TCGA-98-A538-01 4 71275312 71275312 A G PROL1 Silent p.P89P 0.07 TCGA-98-A538-01 4 76416931 76416931 T A RCHY1 Intron 0.15 TCGA-98-A538-01 4 81966889 81966889 T C BMP3 Intron 0.21 TCGA-98-A538-01 4 82090833 82090833 T A PRKG2 Nonsense_Mutation p.R278* 0.34 TCGA-98-A538-01 4 83978096 83978096 A G COPS4 Missense_Mutation p.Y143C 0.25 deleterious(0.01) benign(0.092) TCGA-98-A538-01 4 88534411 88534411 G T DSPP Missense_Mutation p.R358I 0.20 possibly_damaging(0.607) TCGA-98-A538-01 4 90170176 90170176 G A GPRIN3 Silent p.C362C 0.12 TCGA-98-A538-01 4 90816672 90816672 C G MMRN1 Missense_Mutation p.L184V 0.20 tolerated(0.07) possibly_damaging(0.772) TCGA-98-A538-01 5 112770153 112770153 G T TSSK1B Missense_Mutation p.H128Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-98-A538-01 5 113831793 113831793 A C KCNN2 Missense_Mutation p.T552P 0.43 tolerated_low_confidence(0.32) benign(0) TCGA-98-A538-01 5 133295457 133295457 G C C5orf15 Missense_Mutation p.L132V 0.18 deleterious(0.03) possibly_damaging(0.69) TCGA-98-A538-01 5 133901850 133901850 C A JADE2 Silent p.A338A 0.44 TCGA-98-A538-01 5 136315092 136315092 C A SPOCK1 Missense_Mutation p.G353V 0.45 deleterious(0) probably_damaging(1) TCGA-98-A538-01 5 137488289 137488289 T A BRD8 Missense_Mutation p.E913V 0.45 deleterious_low_confidence(0.03) benign(0.309) TCGA-98-A538-01 5 138209112 138209112 C T LRRTM2 Missense_Mutation p.E380K 0.22 tolerated(0.85) benign(0.09) TCGA-98-A538-01 5 140230166 140230166 G A PCDHA9 Missense_Mutation p.V696I 0.44 tolerated_low_confidence(0.09) benign(0.117) TCGA-98-A538-01 5 140237081 140237081 C T PCDHA10 Missense_Mutation p.A483V 0.40 tolerated_low_confidence(0.07) benign(0.168) TCGA-98-A538-01 5 140615729 140615729 G C PCDHB18 RNA 0.25 TCGA-98-A538-01 5 140719888 140719888 C A PCDHGA2 Silent p.P450P 0.46 TCGA-98-A538-01 5 140864830 140864830 G T PCDHGC4 Missense_Mutation p.Q30H 0.16 deleterious(0) possibly_damaging(0.665) TCGA-98-A538-01 5 1409159 1409159 C T SLC6A3 Missense_Mutation p.G494R 0.12 deleterious(0) probably_damaging(0.938) TCGA-98-A538-01 5 147051452 147051452 C A JAKMIP2 5'UTR 0.44 TCGA-98-A538-01 5 149610877 149610877 T A CAMK2A Missense_Mutation p.E378V 0.48 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-98-A538-01 5 156679706 156679706 G C ITK 3'UTR 0.46 TCGA-98-A538-01 5 156768130 156768130 G TC CYFIP2 Frame_Shift_Ins p.A854Sfs*86 0.31 TCGA-98-A538-01 5 167933794 167933794 G T RARS Missense_Mutation p.R435L 0.39 deleterious(0.01) benign(0.121) TCGA-98-A538-01 5 169141440 169141440 G T DOCK2 Silent p.V640V 0.37 TCGA-98-A538-01 5 175956008 175956008 C T RNF44 3'UTR 0.18 TCGA-98-A538-01 5 176011257 176011257 C A CDHR2 Missense_Mutation p.P709T 0.41 deleterious(0.02) benign(0.219) TCGA-98-A538-01 5 176491541 176491541 G T ZNF346 Missense_Mutation p.G276C 0.31 deleterious(0.01) benign(0.443) TCGA-98-A538-01 5 176885085 176885085 C T DBN1 Missense_Mutation p.E586K 0.19 deleterious(0) probably_damaging(0.993) TCGA-98-A538-01 5 176938923 176938923 G T DDX41 Missense_Mutation p.R580S 0.49 tolerated(0.1) possibly_damaging(0.471) TCGA-98-A538-01 5 178391953 178391953 G C ZNF454 Missense_Mutation p.C183S 0.34 deleterious(0.01) probably_damaging(1) TCGA-98-A538-01 5 180218553 180218553 C T MGAT1 3'UTR 0.56 TCGA-98-A538-01 5 19543990 19543990 C G CDH18 Missense_Mutation p.A460P 0.28 deleterious(0) probably_damaging(1) TCGA-98-A538-01 5 26906196 26906196 T A CDH9 Missense_Mutation p.N228I 0.27 tolerated(0.06) possibly_damaging(0.498) TCGA-98-A538-01 5 41008852 41008852 A T MROH2B Missense_Mutation p.V1155D 0.25 deleterious(0) possibly_damaging(0.674) TCGA-98-A538-01 5 41143089 41143089 G C C6 Silent p.V881V 0.21 TCGA-98-A538-01 5 41155091 41155091 C T C6 Missense_Mutation p.G695E 0.14 tolerated(0.73) benign(0.007) TCGA-98-A538-01 5 422928 422928 G T AHRR Missense_Mutation p.D180Y 0.33 deleterious(0) probably_damaging(0.99) TCGA-98-A538-01 5 65307933 65307933 G T ERBB2IP Missense_Mutation p.A122S 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-98-A538-01 5 76704833 76704833 C T PDE8B Missense_Mutation p.T494I 0.52 tolerated(0.12) possibly_damaging(0.467) TCGA-98-A538-01 5 90159663 90159663 T A GPR98 Missense_Mutation p.L5949I 0.49 possibly_damaging(0.874) TCGA-98-A538-01 5 9066551 9066551 T C SEMA5A Missense_Mutation p.S761G 0.11 tolerated(0.65) benign(0.427) TCGA-98-A538-01 5 9202121 9202121 C A SEMA5A Missense_Mutation p.S293I 0.26 deleterious(0) possibly_damaging(0.648) TCGA-98-A538-01 5 98192429 98192429 T C CHD1 Silent p.R1596R 0.38 TCGA-98-A538-01 6 101296466 101296466 C A ASCC3 Missense_Mutation p.G120V 0.55 deleterious(0) probably_damaging(1) TCGA-98-A538-01 6 116833404 116833404 G A FAM26E Intron 0.34 TCGA-98-A538-01 6 117609562 117609562 C T ROS1 3'UTR 0.30 TCGA-98-A538-01 6 127765178 127765178 G A KIAA0408 3'UTR 0.33 TCGA-98-A538-01 6 128031103 128031103 T A THEMIS 3'UTR 0.32 TCGA-98-A538-01 6 13321209 13321209 C A TBC1D7 Missense_Mutation p.Q104H 0.32 tolerated(0.4) benign(0.002) TCGA-98-A538-01 6 136972219 136972219 A C MAP3K5 Nonsense_Mutation p.L564* 0.19 TCGA-98-A538-01 6 147685202 147685202 G A STXBP5 Missense_Mutation p.R994K 0.18 tolerated(0.3) probably_damaging(0.932) TCGA-98-A538-01 6 150004621 150004621 C - LATS1 Frame_Shift_Del p.G535Efs*6 0.35 TCGA-98-A538-01 6 152510396 152510396 T C SYNE1 Silent p.L7764L 0.35 TCGA-98-A538-01 6 152784652 152784652 C A SYNE1 Missense_Mutation p.D645Y 0.52 probably_damaging(0.983) TCGA-98-A538-01 6 153043206 153043206 C A MYCT1 Missense_Mutation p.L176I 0.41 tolerated(0.24) probably_damaging(0.998) TCGA-98-A538-01 6 160199828 160199828 G A ACAT2 Silent p.G387G 0.26 TCGA-98-A538-01 6 163483283 163483283 C A PACRG Silent p.I131I 0.22 TCGA-98-A538-01 6 26217326 26217326 G C HIST1H2AE Missense_Mutation p.E42Q 0.16 tolerated_low_confidence(0.18) possibly_damaging(0.479) TCGA-98-A538-01 6 26271490 26271490 G T HIST1H3G Silent p.R41R 0.32 TCGA-98-A538-01 6 27420583 27420583 C A ZNF184 Missense_Mutation p.C252F 0.15 deleterious(0) probably_damaging(1) TCGA-98-A538-01 6 27782956 27782956 G T HIST1H2BM Silent p.V45V 0.15 TCGA-98-A538-01 6 28971343 28971343 G A ZNF311 Missense_Mutation p.P13L 0.16 deleterious(0.01) benign(0.146) TCGA-98-A538-01 6 28971344 28971344 G C ZNF311 Missense_Mutation p.P13A 0.15 tolerated(0.18) benign(0.054) TCGA-98-A538-01 6 29054324 29054324 C - OR2B3 Frame_Shift_Del p.Q235Kfs*11 0.28 TCGA-98-A538-01 6 29429422 29429422 C A OR2H1 5'UTR 0.25 TCGA-98-A538-01 6 29598278 29598278 G A GABBR1 Silent p.I144I 0.24 TCGA-98-A538-01 6 30080574 30080574 A T TRIM31 Missense_Mutation p.S3R 0.36 tolerated(0.27) benign(0.01) TCGA-98-A538-01 6 31322891 31322891 C G HLA-B Missense_Mutation p.K335N 0.15 deleterious_low_confidence(0.02) probably_damaging(0.989) TCGA-98-A538-01 6 31324471 31324471 C T HLA-B Missense_Mutation p.E113K 0.32 deleterious_low_confidence(0.03) probably_damaging(0.993) TCGA-98-A538-01 6 31557723 31557723 C A NCR3 Missense_Mutation p.G75V 0.15 deleterious(0) probably_damaging(0.998) TCGA-98-A538-01 6 31685359 31685359 C T LY6G6D Silent p.P60P 0.13 TCGA-98-A538-01 6 31797662 31797662 G T HSPA1B 3'UTR 0.10 TCGA-98-A538-01 6 32184846 32184846 T C NOTCH4 Splice_Site p.X580_splice 0.33 TCGA-98-A538-01 6 32260590 32260590 C G C6orf10 3'UTR 0.18 TCGA-98-A538-01 6 32974606 32974606 G C HLA-DOA 3'UTR 0.19 TCGA-98-A538-01 6 33287496 33287496 G C DAXX Nonsense_Mutation p.S534* 0.15 TCGA-98-A538-01 6 33288203 33288203 G A DAXX Missense_Mutation p.S402F 0.15 deleterious(0.01) probably_damaging(0.972) TCGA-98-A538-01 6 33289223 33289223 G A DAXX Missense_Mutation p.S110F 0.11 deleterious(0.01) possibly_damaging(0.905) TCGA-98-A538-01 6 34101173 34101173 G A GRM4 Missense_Mutation p.P34L 0.26 tolerated(0.13) probably_damaging(0.998) TCGA-98-A538-01 6 41000848 41000848 C A UNC5CL Nonsense_Mutation p.E242* 0.19 TCGA-98-A538-01 6 41533620 41533620 G A FOXP4 Missense_Mutation p.G41D 0.35 deleterious_low_confidence(0.05) benign(0.147) TCGA-98-A538-01 6 47846189 47846189 C G PTCHD4 Silent p.L797L 0.18 TCGA-98-A538-01 6 51921688 51921688 C A PKHD1 Silent p.L534L 0.27 TCGA-98-A538-01 6 52622659 52622659 C T GSTA2 Silent p.E29E 0.21 TCGA-98-A538-01 6 52880897 52880897 C A ICK Missense_Mutation p.R272L 0.35 deleterious(0.01) probably_damaging(1) TCGA-98-A538-01 6 54219374 54219374 G T TINAG Missense_Mutation p.S397I 0.24 tolerated(0.26) possibly_damaging(0.588) TCGA-98-A538-01 6 56006608 56006608 C - COL21A1 Frame_Shift_Del p.G506Efs*74 0.10 TCGA-98-A538-01 6 56418023 56418023 C A DST Silent p.L2566L 0.18 TCGA-98-A538-01 6 56919011 56919011 G T KIAA1586 Nonsense_Mutation p.G572* 0.32 TCGA-98-A538-01 6 70637869 70637869 C A COL19A1 Missense_Mutation p.A112D 0.43 deleterious(0) unknown(0) TCGA-98-A538-01 6 70637870 70637870 C A COL19A1 Silent p.A112A 0.42 TCGA-98-A538-01 6 73000534 73000534 G T RIMS1 Missense_Mutation p.G1236V 0.38 tolerated(0.29) probably_damaging(0.931) TCGA-98-A538-01 6 76570753 76570753 A G MYO6 Missense_Mutation p.Y496C 0.37 deleterious(0) unknown(0) TCGA-98-A538-01 6 82459546 82459546 C A FAM46A Missense_Mutation p.A399S 0.47 tolerated(0.31) benign(0.024) TCGA-98-A538-01 7 100686846 100686846 A G MUC17 Missense_Mutation p.E4050G 0.38 benign(0) TCGA-98-A538-01 7 102524058 102524058 G A FBXL13 Silent p.F394F 0.21 TCGA-98-A538-01 7 102667899 102667899 C G FBXL13 Missense_Mutation p.E108D 0.16 tolerated(0.5) benign(0.005) TCGA-98-A538-01 7 107836259 107836259 C T NRCAM Missense_Mutation p.R470K 0.29 tolerated(0.44) benign(0.129) TCGA-98-A538-01 7 114268853 114268853 G T FOXP2 Intron 0.14 TCGA-98-A538-01 7 116371820 116371820 A G MET Silent p.Q433Q 0.15 TCGA-98-A538-01 7 11675923 11675923 C A THSD7A Missense_Mutation p.D286Y 0.18 deleterious(0.01) possibly_damaging(0.806) TCGA-98-A538-01 7 11675924 11675924 C A THSD7A Missense_Mutation p.K285N 0.18 tolerated(0.47) benign(0.244) TCGA-98-A538-01 7 117067505 117067505 T C ASZ1 Missense_Mutation p.S4G 0.15 tolerated(1) benign(0) TCGA-98-A538-01 7 120478904 120478904 C A TSPAN12 Missense_Mutation p.C71F 0.12 deleterious(0.03) possibly_damaging(0.905) TCGA-98-A538-01 7 123269155 123269155 T C ASB15 Silent p.L369L 0.45 TCGA-98-A538-01 7 123276868 123276868 C A ASB15 Missense_Mutation p.P534T 0.41 tolerated(0.09) possibly_damaging(0.893) TCGA-98-A538-01 7 126882847 126882847 G C GRM8 Missense_Mutation p.P138A 0.17 tolerated(0.69) benign(0.003) TCGA-98-A538-01 7 128494499 128494499 G T FLNC Missense_Mutation p.V2254L 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-98-A538-01 7 129046252 129046252 A G AHCYL2 Missense_Mutation p.M414V 0.40 tolerated(0.07) benign(0.019) TCGA-98-A538-01 7 129046308 129046308 G T AHCYL2 Splice_Site p.X432_splice 0.42 TCGA-98-A538-01 7 137567291 137567291 C A CREB3L2 Missense_Mutation p.G452C 0.21 deleterious(0.04) benign(0.159) TCGA-98-A538-01 7 137782612 137782612 C A AKR1D1 Missense_Mutation p.P127T 0.40 deleterious(0) probably_damaging(0.975) TCGA-98-A538-01 7 138936705 138936705 G T UBN2 Missense_Mutation p.G189W 0.11 deleterious(0) possibly_damaging(0.879) TCGA-98-A538-01 7 139791641 139791641 T G KDM7A Silent p.A898A 0.15 TCGA-98-A538-01 7 140221668 140221668 C A DENND2A Silent p.R966R 0.31 TCGA-98-A538-01 7 142000779 142000779 T A TRBV2 5'UTR 0.10 TCGA-98-A538-01 7 142099926 142099926 G T TRBV7-8 Missense_Mutation p.L5I 0.33 tolerated(0.08) benign(0.178) TCGA-98-A538-01 7 142124552 142124552 A T TRBV6-8 Missense_Mutation p.L5H 0.18 deleterious(0.02) benign(0.409) TCGA-98-A538-01 7 142499809 142499809 C A TRBC2 Missense_Mutation p.L143M 0.12 tolerated(0.14) probably_damaging(0.981) TCGA-98-A538-01 7 142640125 142640125 G A KEL Missense_Mutation p.P593L 0.40 deleterious(0) probably_damaging(0.99) TCGA-98-A538-01 7 146536972 146536972 C G CNTNAP2 Silent p.P126P 0.33 TCGA-98-A538-01 7 148463653 148463653 G T CUL1 Missense_Mutation p.A264S 0.22 deleterious(0.02) benign(0.236) TCGA-98-A538-01 7 149479366 149479366 C A SSPO RNA 0.27 TCGA-98-A538-01 7 150499319 150499320 - G TMEM176A Frame_Shift_Ins p.I66Dfs*73 0.33 TCGA-98-A538-01 7 150746246 150746246 T A ASIC3 Missense_Mutation p.C92S 0.23 deleterious(0) probably_damaging(0.999) TCGA-98-A538-01 7 150747925 150747925 C G ASIC3 Silent p.P298P 0.19 TCGA-98-A538-01 7 20778655 20778655 G T ABCB5 Missense_Mutation p.V973F 0.43 deleterious(0.01) possibly_damaging(0.822) TCGA-98-A538-01 7 21784204 21784204 A G DNAH11 Missense_Mutation p.Y2775C 0.48 benign(0.003) TCGA-98-A538-01 7 27168797 27168797 A T HOXA4 3'UTR 0.48 TCGA-98-A538-01 7 29160613 29160613 C A CPVL Missense_Mutation p.G22V 0.46 deleterious(0) probably_damaging(1) TCGA-98-A538-01 7 42005054 42005054 C T GLI3 Missense_Mutation p.R1206K 0.45 tolerated_low_confidence(0.3) benign(0.005) TCGA-98-A538-01 7 43477816 43477816 G T HECW1 Intron 0.47 TCGA-98-A538-01 7 44839050 44839050 C G PPIA Missense_Mutation p.H54D 0.16 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-98-A538-01 7 56128520 56128520 G T CCT6A Missense_Mutation p.G412C 0.43 deleterious(0) probably_damaging(0.995) TCGA-98-A538-01 7 57529586 57529586 T C ZNF716 Silent p.F473F 0.73 TCGA-98-A538-01 7 5879666 5879666 G A ZNF815P RNA 0.68 TCGA-98-A538-01 7 64438323 64438323 T G ZNF117 3'UTR 0.15 TCGA-98-A538-01 7 86415867 86415867 C T GRM3 Silent p.R253R 0.35 TCGA-98-A538-01 7 86509623 86509623 G C KIAA1324L 3'UTR 0.18 TCGA-98-A538-01 7 87329790 87329790 A T RUNDC3B Nonsense_Mutation p.R115* 0.16 TCGA-98-A538-01 7 87808355 87808355 G T ADAM22 Missense_Mutation p.K802N 0.24 deleterious_low_confidence(0.02) probably_damaging(0.972) TCGA-98-A538-01 7 88966152 88966152 C A ZNF804B Missense_Mutation p.L1286M 0.44 deleterious(0.02) probably_damaging(0.94) TCGA-98-A538-01 7 88966258 88966258 A T ZNF804B Missense_Mutation p.Q1321L 0.39 deleterious(0) probably_damaging(0.998) TCGA-98-A538-01 7 89862003 89862003 C G STEAP2 3'UTR 0.25 TCGA-98-A538-01 7 89906434 89906434 A T C7orf63 Missense_Mutation p.E344D 0.53 tolerated(0.06) possibly_damaging(0.49) TCGA-98-A538-01 7 91674364 91674364 C T AKAP9 Silent p.L1735L 0.17 TCGA-98-A538-01 7 95157270 95157270 C A ASB4 Silent p.P211P 0.35 TCGA-98-A538-01 7 99463550 99463550 C A CYP3A43 Missense_Mutation p.L481I 0.38 tolerated(0.08) benign(0.063) TCGA-98-A538-01 7 99691448 99691448 G T MCM7 Intron 0.17 TCGA-98-A538-01 8 100829819 100829819 G A VPS13B Missense_Mutation p.E2742K 0.12 deleterious(0.01) benign(0.292) TCGA-98-A538-01 8 104928675 104928710 TGCAAGGAGCCACATTTGAGGAAGTGTACAACATCA - RIMS2 In_Frame_Del p.Q650_I661del 0.18 TCGA-98-A538-01 8 110412434 110412434 G T PKHD1L1 Missense_Mutation p.W381L 0.26 tolerated(0.12) possibly_damaging(0.872) TCGA-98-A538-01 8 113326808 113326808 C A CSMD3 Nonsense_Mutation p.G2467* 0.12 TCGA-98-A538-01 8 113504857 113504857 A T CSMD3 Silent p.L1713L 0.30 TCGA-98-A538-01 8 113649072 113649072 C A CSMD3 Missense_Mutation p.W1230L 0.32 deleterious(0.01) probably_damaging(1) TCGA-98-A538-01 8 117859852 117859852 C A RAD21 Missense_Mutation p.A595S 0.27 tolerated(0.44) probably_damaging(0.998) TCGA-98-A538-01 8 118174066 118174066 C G SLC30A8 Missense_Mutation p.A221G 0.29 deleterious(0) probably_damaging(0.928) TCGA-98-A538-01 8 124340795 124340795 T C ATAD2 Missense_Mutation p.K1168R 0.29 tolerated(1) benign(0.001) TCGA-98-A538-01 8 125716434 125716434 T A MTSS1 Splice_Site p.X25_splice 0.33 TCGA-98-A538-01 8 134042249 134042250 - CCGGAGAG TG Frame_Shift_Ins p.V2411Gfs*5 0.15 TCGA-98-A538-01 8 139207541 139207541 G T FAM135B Missense_Mutation p.A278D 0.27 tolerated(0.82) benign(0.021) TCGA-98-A538-01 8 21882678 21882678 G T NPM2 5'UTR 0.27 TCGA-98-A538-01 8 22106607 22106607 C T POLR3D Missense_Mutation p.P236S 0.19 tolerated(0.34) benign(0.001) TCGA-98-A538-01 8 24324410 24324410 C G ADAM7 Missense_Mutation p.P163R 0.49 tolerated(0.33) benign(0.268) TCGA-98-A538-01 8 24775477 24775477 G C NEFM Missense_Mutation p.E703D 0.37 tolerated(0.08) possibly_damaging(0.82) TCGA-98-A538-01 8 27925181 27925181 C T NUGGC Nonsense_Mutation p.W187* 0.07 TCGA-98-A538-01 8 28967573 28967573 C A KIF13B Silent p.V1315V 0.50 TCGA-98-A538-01 8 36793492 36793492 G A KCNU1 3'UTR 0.19 TCGA-98-A538-01 8 38196090 38196090 T G WHSC1L1 Missense_Mutation p.K237N 0.24 tolerated(0.32) benign(0.024) TCGA-98-A538-01 8 41753950 41753950 G A ANK1 Nonsense_Mutation p.Q17* 0.31 TCGA-98-A538-01 8 42260978 42260978 C G VDAC3 Missense_Mutation p.S235C 0.11 deleterious(0.05) possibly_damaging(0.903) TCGA-98-A538-01 8 51465658 51465658 T G SNTG1 Missense_Mutation p.I243M 0.32 deleterious(0) benign(0.418) TCGA-98-A538-01 8 53540688 53540688 G A RB1CC1 Missense_Mutation p.R1514C 0.20 deleterious(0) probably_damaging(0.992) TCGA-98-A538-01 8 54866778 54866778 G T RGS20 Nonsense_Mutation p.E296* 0.14 TCGA-98-A538-01 8 55541248 55541248 G T RP1 Missense_Mutation p.Q1602H 0.27 tolerated(0.6) benign(0.014) TCGA-98-A538-01 8 57026080 57026080 G A MOS Silent p.A154A 0.33 TCGA-98-A538-01 8 61484672 61484672 G T RAB2A Silent p.T62T 0.24 TCGA-98-A538-01 8 62596647 62596647 T C ASPH Silent p.T68T 0.24 TCGA-98-A538-01 8 64100242 64100242 C T YTHDF3 Missense_Mutation p.S557L 0.28 deleterious(0) possibly_damaging(0.504) TCGA-98-A538-01 8 69104578 69104578 G T PREX2 Missense_Mutation p.R1474S 0.33 deleterious(0) benign(0.033) TCGA-98-A538-01 8 74528007 74528007 G A STAU2 Missense_Mutation p.S194L 0.29 tolerated(0.28) benign(0.035) TCGA-98-A538-01 8 77767808 77767808 A G ZFHX4 Missense_Mutation p.Q2884R 0.29 possibly_damaging(0.73) TCGA-98-A538-01 8 81897063 81897063 T A PAG1 Missense_Mutation p.E275V 0.17 tolerated(0.15) benign(0.003) TCGA-98-A538-01 8 8560256 8560256 C G CLDN23 Silent p.L116L 0.12 TCGA-98-A538-01 8 87587994 87587994 G T CNGB3 3'UTR 0.32 TCGA-98-A538-01 8 88886077 88886077 G T DCAF4L2 Missense_Mutation p.N41K 0.31 deleterious(0.04) benign(0.101) TCGA-98-A538-01 8 92972471 92972471 T C RUNX1T1 Nonstop_Mutation p.*616Wext*2 0.29 TCGA-98-A538-01 9 107593937 107593937 C T ABCA1 Missense_Mutation p.D561N 0.23 deleterious(0.01) probably_damaging(0.917) TCGA-98-A538-01 9 112694264 112694264 C G PALM2-AKAP2 Missense_Mutation p.T151R 0.07 tolerated(0.26) benign(0.24) TCGA-98-A538-01 9 115931852 115931852 G C FKBP15 Missense_Mutation p.P1046R 0.20 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-98-A538-01 9 120476848 120476848 C A TLR4 Silent p.A814A 0.41 TCGA-98-A538-01 9 125154785 125154785 G T PTGS1 Missense_Mutation p.D588Y 0.32 tolerated(0.06) benign(0.092) TCGA-98-A538-01 9 130540909 130540909 T C SH2D3C 5'UTR 0.38 TCGA-98-A538-01 9 13126712 13126713 - A MPDZ Frame_Shift_Ins p.S1510Efs*25 0.22 TCGA-98-A538-01 9 136321254 136321254 C G ADAMTS13 Missense_Mutation p.A1211G 0.15 tolerated(0.23) benign(0.008) TCGA-98-A538-01 9 137801542 137801542 T A FCN1 3'UTR 0.63 TCGA-98-A538-01 9 139272622 139272622 C A SNAPC4 Missense_Mutation p.R1219S 0.56 tolerated(0.72) benign(0) TCGA-98-A538-01 9 14722520 14722520 C A CER1 Nonsense_Mutation p.E51* 0.43 TCGA-98-A538-01 9 33948710 33948710 A T UBAP2 Intron 0.44 TCGA-98-A538-01 9 37819373 37819373 C T DCAF10 Missense_Mutation p.H210Y 0.23 deleterious(0) probably_damaging(0.968) TCGA-98-A538-01 9 72755177 72755177 C A MAMDC2 Silent p.R371R 0.41 TCGA-98-A538-01 9 79323312 79323312 A T PRUNE2 Missense_Mutation p.L1293Q 0.59 deleterious(0.01) probably_damaging(0.94) TCGA-98-A538-01 9 90502002 90502002 C G SPATA31E1 Missense_Mutation p.A867G 0.42 tolerated(0.34) benign(0.132) TCGA-98-A538-01 9 91993657 91993657 C A SEMA4D Nonsense_Mutation p.E851* 0.23 TCGA-98-A538-01 X 134993755 134993755 G T SAGE1 Missense_Mutation p.D722Y 0.43 deleterious(0) probably_damaging(0.995) TCGA-98-A538-01 X 138857031 138857031 C T ATP11C Missense_Mutation p.M681I 0.28 tolerated(0.13) possibly_damaging(0.507) TCGA-98-A538-01 X 138870464 138870464 A T ATP11C Nonsense_Mutation p.C472* 0.47 TCGA-98-A538-01 X 144904214 144904214 C T SLITRK2 Missense_Mutation p.L91F 0.32 deleterious(0) probably_damaging(1) TCGA-98-A538-01 X 152482173 152482173 G T MAGEA1 Missense_Mutation p.L280I 0.53 deleterious(0.02) benign(0.315) TCGA-98-A538-01 X 153218130 153218130 C G HCFC1 Missense_Mutation p.A1593P 0.38 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-98-A538-01 X 1584491 1584491 G C P2RY8 Missense_Mutation p.R321G 0.39 tolerated(0.08) benign(0.004) TCGA-98-A538-01 X 24197383 24197383 G T ZFX Missense_Mutation p.D48Y 0.61 deleterious(0.04) possibly_damaging(0.87) TCGA-98-A538-01 X 24766560 24766560 C T POLA1 Missense_Mutation p.P936S 0.38 tolerated(0.25) benign(0.021) TCGA-98-A538-01 X 27998138 27998138 G T DCAF8L1 Missense_Mutation p.D438E 0.70 deleterious(0) benign(0.001) TCGA-98-A538-01 X 32235050 32235050 A G DMD Missense_Mutation p.Y2141H 0.58 possibly_damaging(0.607) TCGA-98-A538-01 X 37961665 37961665 G A SYTL5 Missense_Mutation p.R378H 0.30 tolerated(0.44) benign(0.001) TCGA-98-A538-01 X 37981428 37981428 G C SYTL5 Missense_Mutation p.A623P 0.62 deleterious(0) probably_damaging(0.968) TCGA-98-A538-01 X 38280415 38280415 C A OTC 3'UTR 0.64 TCGA-98-A538-01 X 48370890 48370890 C A PORCN Missense_Mutation p.P184T 0.67 tolerated(0.32) benign(0.063) TCGA-98-A538-01 X 48631856 48631856 G A GLOD5 3'UTR 0.51 TCGA-98-A538-01 X 49689885 49689885 A T CLCN5 5'UTR 0.56 TCGA-98-A538-01 X 7811617 7811617 G A VCX Missense_Mutation p.A61T 0.15 tolerated(0.26) unknown(0) TCGA-98-A538-01 X 89177067 89177067 C G TGIF2LX 5'UTR 0.32 TCGA-98-A539-01 10 134754546 134754546 C A TTC40 Missense_Mutation p.V109L 0.30 deleterious(0) probably_damaging(0.998) TCGA-98-A539-01 10 1779375 1779375 G C ADARB2 5'UTR 0.51 TCGA-98-A539-01 10 93608373 93608373 C T TNKS2 Silent p.S864S 0.39 TCGA-98-A539-01 11 113651201 113651201 C T CLDN25 Silent p.V228V 0.20 TCGA-98-A539-01 11 113935271 113935271 G A ZBTB16 Missense_Mutation p.E417K 0.16 tolerated(0.06) benign(0.065) TCGA-98-A539-01 11 119535650 119535650 C T PVRL1 Missense_Mutation p.G454D 0.18 tolerated(0.43) probably_damaging(0.998) TCGA-98-A539-01 11 124180524 124180524 G T OR8D1 Missense_Mutation p.L47I 0.16 tolerated(1) benign(0.004) TCGA-98-A539-01 11 126306872 126306872 C A KIRREL3 Silent p.S462S 0.35 TCGA-98-A539-01 11 4389237 4389237 C A OR52B4 Missense_Mutation p.D97Y 0.26 deleterious(0.01) possibly_damaging(0.634) TCGA-98-A539-01 11 4389282 4389282 G T OR52B4 Missense_Mutation p.Q82K 0.20 tolerated(1) benign(0.007) TCGA-98-A539-01 11 45927424 45927424 G T MAPK8IP1 3'UTR 0.25 TCGA-98-A539-01 11 46806205 46806205 G A CKAP5 Missense_Mutation p.H663Y 0.23 tolerated(0.18) benign(0.001) TCGA-98-A539-01 11 5289669 5289669 C G HBE1 3'UTR 0.17 TCGA-98-A539-01 11 55032628 55032628 G T TRIM48 Missense_Mutation p.W99C 0.23 tolerated(0.26) benign(0.003) TCGA-98-A539-01 11 55563242 55563242 G T OR5D14 Missense_Mutation p.V71F 0.16 deleterious(0.01) possibly_damaging(0.835) TCGA-98-A539-01 11 56086011 56086011 G T OR8K3 Missense_Mutation p.V77L 0.22 deleterious_low_confidence(0.01) benign(0.27) TCGA-98-A539-01 11 59807931 59807931 C T OOSP2 5'UTR 0.14 TCGA-98-A539-01 11 608104 608104 C G PHRF1 Missense_Mutation p.T882R 0.13 tolerated(0.16) benign(0.281) TCGA-98-A539-01 11 72398495 72398495 G C ARAP1 Missense_Mutation p.L1392V 0.15 deleterious(0.01) benign(0.286) TCGA-98-A539-01 11 77832176 77832176 G C ALG8 Missense_Mutation p.T138R 0.19 tolerated(0.61) benign(0.195) TCGA-98-A539-01 12 117660641 117660641 A T NOS1 Missense_Mutation p.V1319D 0.25 deleterious(0) probably_damaging(0.999) TCGA-98-A539-01 12 118511719 118511719 C A VSIG10 Missense_Mutation p.G335V 0.16 deleterious(0.02) possibly_damaging(0.507) TCGA-98-A539-01 12 119772930 119772930 T - CCDC60 5'UTR 0.19 TCGA-98-A539-01 12 120591674 120591674 A C GCN1L1 Nonsense_Mutation p.Y1247* 0.28 TCGA-98-A539-01 12 14943518 14943518 G A WBP11 Missense_Mutation p.P394L 0.25 deleterious_low_confidence(0) unknown(0) TCGA-98-A539-01 12 21350110 21350110 A - SLCO1B1 Frame_Shift_Del p.N321Mfs*2 0.23 TCGA-98-A539-01 12 27533259 27533259 C G ARNTL2 Missense_Mutation p.Q136E 0.25 deleterious(0.05) possibly_damaging(0.666) TCGA-98-A539-01 12 27543014 27543014 C T ARNTL2 Intron 0.17 TCGA-98-A539-01 12 29597107 29597107 G A OVCH1 Silent p.I996I 0.20 TCGA-98-A539-01 12 40223912 40223912 A T SLC2A13 Missense_Mutation p.W480R 0.11 tolerated(0.16) benign(0.265) TCGA-98-A539-01 12 40692044 40692044 G T LRRK2 Splice_Site p.X1033_splice 0.09 TCGA-98-A539-01 12 48063894 48063894 G A RPAP3 Silent p.L508L 0.16 TCGA-98-A539-01 12 51686001 51686001 C T BIN2 Missense_Mutation p.E297K 0.26 tolerated(0.09) benign(0.129) TCGA-98-A539-01 12 52843322 52843322 C A KRT6B Missense_Mutation p.E336D 0.22 deleterious(0.02) possibly_damaging(0.496) TCGA-98-A539-01 12 54106976 54106976 C A CALCOCO1 Missense_Mutation p.E602D 0.24 tolerated(0.17) probably_damaging(0.93) TCGA-98-A539-01 12 57960921 57960921 C A KIF5A Missense_Mutation p.R172S 0.24 deleterious(0.01) possibly_damaging(0.498) TCGA-98-A539-01 12 7245014 7245014 C G C1R 5'UTR 0.21 TCGA-98-A539-01 12 8234915 8234915 C G NECAP1 Missense_Mutation p.L11V 0.11 tolerated(0.12) benign(0.063) TCGA-98-A539-01 12 94975538 94975538 G C TMCC3 Silent p.G285G 0.24 TCGA-98-A539-01 12 9997082 9997082 C T KLRF1 Missense_Mutation p.S219F 0.27 deleterious(0.01) benign(0.344) TCGA-98-A539-01 13 31722515 31722515 C T HSPH1 Missense_Mutation p.E414K 0.14 tolerated(0.75) benign(0.181) TCGA-98-A539-01 13 76431974 76431974 T C LMO7 Intron 0.11 TCGA-98-A539-01 14 105930433 105930433 G A MTA1 Missense_Mutation p.G381R 0.42 deleterious(0.01) possibly_damaging(0.456) TCGA-98-A539-01 14 106307397 106307397 G T IGHD Silent p.G214G 0.67 TCGA-98-A539-01 14 22038643 22038643 A G OR10G3 Missense_Mutation p.I78T 0.12 tolerated(1) benign(0.005) TCGA-98-A539-01 14 22363133 22363133 G C TRAV8-4 Missense_Mutation p.K88N 0.04 deleterious(0.02) benign(0.365) TCGA-98-A539-01 14 38679076 38679076 A G SSTR1 Missense_Mutation p.H161R 0.11 deleterious(0.03) probably_damaging(0.954) TCGA-98-A539-01 14 39648294 39648294 G T PNN Splice_Site p.X167_splice 0.32 TCGA-98-A539-01 14 58941412 58941412 G T KIAA0586 Missense_Mutation p.G961C 0.17 deleterious(0) probably_damaging(1) TCGA-98-A539-01 14 61952317 61952317 A T PRKCH Missense_Mutation p.Y459F 0.31 deleterious(0) possibly_damaging(0.898) TCGA-98-A539-01 14 77492076 77492076 G A IRF2BPL Missense_Mutation p.P687L 0.24 tolerated(0.18) unknown(0) TCGA-98-A539-01 14 79433729 79433729 C A NRXN3 Missense_Mutation p.L613M 0.17 deleterious(0) probably_damaging(0.924) TCGA-98-A539-01 14 93399087 93399087 G A CHGA Nonsense_Mutation p.W394* 0.27 TCGA-98-A539-01 15 23810908 23810908 A G MKRN3 5'UTR 0.35 TCGA-98-A539-01 15 31196869 31196869 G C FAN1 Translation_Start_Site p.M1? 0.17 tolerated_low_confidence(0.22) benign(0.003) TCGA-98-A539-01 15 56736730 56736730 T C MNS1 Missense_Mutation p.K200E 0.13 tolerated(0.09) benign(0.328) TCGA-98-A539-01 15 64067623 64067623 C A HERC1 Missense_Mutation p.R67L 0.19 possibly_damaging(0.801) TCGA-98-A539-01 15 72030082 72030082 A C THSD4 Missense_Mutation p.N548H 0.33 tolerated(0.13) benign(0.015) TCGA-98-A539-01 15 74276211 74276211 C T STOML1 3'UTR 0.14 TCGA-98-A539-01 16 15204339 15204339 C G RP11-1186N24.5 RNA 0.32 TCGA-98-A539-01 16 29816583 29816583 G A KIF22 Splice_Site p.X651_splice 0.06 TCGA-98-A539-01 16 49313504 49313504 G T CBLN1 Silent p.L131L 0.27 TCGA-98-A539-01 16 56969216 56969216 C T HERPUD1 Missense_Mutation p.L73F 0.11 tolerated(0.24) benign(0.319) TCGA-98-A539-01 16 66887365 66887365 G A CA7 Silent p.L253L 0.25 TCGA-98-A539-01 16 67218874 67218874 G T EXOC3L1 Missense_Mutation p.D612E 0.19 tolerated(1) benign(0.011) TCGA-98-A539-01 16 71571393 71571393 C T CHST4 Silent p.Y271Y 0.19 TCGA-98-A539-01 17 18243487 18243487 G C SHMT1 Missense_Mutation p.D228E 0.26 deleterious(0) probably_damaging(1) TCGA-98-A539-01 17 33749742 33749742 G T SLFN12 Nonsense_Mutation p.Y102* 0.18 TCGA-98-A539-01 17 39261912 39261912 G A KRTAP4-9 Missense_Mutation p.R91K 0.23 tolerated(0.08) unknown(0) TCGA-98-A539-01 17 56573063 56573063 C - MTMR4 Frame_Shift_Del p.V814Ffs*13 0.18 TCGA-98-A539-01 17 73914123 73914123 C T FBF1 Missense_Mutation p.E744K 0.15 deleterious(0) possibly_damaging(0.6) TCGA-98-A539-01 17 74944109 74944109 C A MGAT5B Missense_Mutation p.H716Q 0.22 tolerated(0.55) benign(0.015) TCGA-98-A539-01 18 77488915 77488915 C T CTDP1 Missense_Mutation p.P809L 0.05 tolerated(0.16) benign(0.009) TCGA-98-A539-01 19 10602619 10602619 C T KEAP1 Missense_Mutation p.R320Q 0.43 deleterious(0) possibly_damaging(0.834) TCGA-98-A539-01 19 14077230 14077230 C T RFX1 Intron 0.35 TCGA-98-A539-01 19 1440169 1440169 C A RPS15 Silent p.R81R 0.15 TCGA-98-A539-01 19 17330167 17330167 G T USE1 Missense_Mutation p.A190S 0.50 tolerated(0.13) probably_damaging(0.951) TCGA-98-A539-01 19 19308039 19308039 C T RFXANK Silent p.L106L 0.30 TCGA-98-A539-01 19 19369346 19369346 G T HAPLN4 Missense_Mutation p.T268K 0.31 deleterious(0.02) possibly_damaging(0.539) TCGA-98-A539-01 19 20235984 20235984 G A CTC-260E6.2 RNA 0.47 TCGA-98-A539-01 19 22940826 22940826 C A ZNF99 Missense_Mutation p.A629S 0.28 tolerated(0.09) benign(0.396) TCGA-98-A539-01 19 3783902 3783902 G A MATK Silent p.R165R 0.41 TCGA-98-A539-01 19 41522729 41522729 C A CYP2B6 Silent p.R491R 0.15 TCGA-98-A539-01 19 51274622 51274622 G T GPR32 Missense_Mutation p.K255N 0.36 tolerated(0.12) possibly_damaging(0.734) TCGA-98-A539-01 19 52130442 52130442 C A SIGLEC5 Missense_Mutation p.A448S 0.18 deleterious(0.04) probably_damaging(0.954) TCGA-98-A539-01 19 52272356 52272356 C A FPR2 Missense_Mutation p.P149T 0.05 tolerated(0.27) possibly_damaging(0.589) TCGA-98-A539-01 19 53645745 53645745 T C ZNF347 Silent p.V113V 0.09 TCGA-98-A539-01 19 58018283 58018283 C T ZNF773 Missense_Mutation p.P274S 0.31 deleterious(0) probably_damaging(1) TCGA-98-A539-01 19 58198304 58198306 AGT GG ZNF551 Frame_Shift_Del p.S221Gfs*74 0.08 TCGA-98-A539-01 19 58757683 58757683 A T ZNF544 Missense_Mutation p.E17V 0.34 deleterious(0.01) possibly_damaging(0.823) TCGA-98-A539-01 1 101343079 101343079 T C EXTL2 Missense_Mutation p.N129S 0.32 deleterious(0) possibly_damaging(0.795) TCGA-98-A539-01 1 11889268 11889268 C T CLCN6 Silent p.L379L 0.11 TCGA-98-A539-01 1 153520938 153520938 C A S100A3 Silent p.A8A 0.21 TCGA-98-A539-01 1 156930247 156930247 C G ARHGEF11 Silent p.L415L 0.12 TCGA-98-A539-01 1 158549095 158549095 C A OR10X1 Missense_Mutation p.A199S 0.06 tolerated(0.06) possibly_damaging(0.5) TCGA-98-A539-01 1 158817533 158817533 A G MNDA Missense_Mutation p.K335E 0.26 tolerated(0.06) possibly_damaging(0.615) TCGA-98-A539-01 1 158817535 158817535 G T MNDA Missense_Mutation p.K335N 0.26 deleterious(0) probably_damaging(0.965) TCGA-98-A539-01 1 183212514 183212514 C A LAMC2 Silent p.T1187T 0.13 TCGA-98-A539-01 1 186008958 186008958 C T HMCN1 Silent p.L2043L 0.05 TCGA-98-A539-01 1 192993014 192993014 T A UCHL5 Missense_Mutation p.Y231F 0.09 deleterious(0.04) benign(0.061) TCGA-98-A539-01 1 196706082 196706082 G T CFH Nonsense_Mutation p.G848* 0.13 TCGA-98-A539-01 1 200017482 200017482 A T NR5A2 Missense_Mutation p.I216F 0.32 tolerated(0.14) benign(0.007) TCGA-98-A539-01 1 236730065 236730065 G A HEATR1 Missense_Mutation p.P1397S 0.30 deleterious(0.01) possibly_damaging(0.873) TCGA-98-A539-01 1 247614913 247614913 C G OR2B11 Silent p.L124L 0.12 TCGA-98-A539-01 1 248366868 248366868 T C OR2M3 Missense_Mutation p.S167P 0.05 tolerated(1) benign(0.042) TCGA-98-A539-01 1 248737377 248737377 G T OR2T34 Missense_Mutation p.H228N 0.25 tolerated(0.05) benign(0.079) TCGA-98-A539-01 1 32636509 32636509 G T KPNA6 3'UTR 0.18 TCGA-98-A539-01 1 53553786 53553786 G C SLC1A7 Silent p.T526T 0.17 TCGA-98-A539-01 1 57537979 57537979 C A DAB1 Missense_Mutation p.V139L 0.28 tolerated(0.06) possibly_damaging(0.847) TCGA-98-A539-01 1 67266865 67266865 G A INSL5 Silent p.L14L 0.18 TCGA-98-A539-01 1 71478052 71478052 T G PTGER3 Missense_Mutation p.N338T 0.16 deleterious(0) probably_damaging(1) TCGA-98-A539-01 1 75680353 75680353 T C SLC44A5 Missense_Mutation p.Y580C 0.09 deleterious(0) probably_damaging(0.994) TCGA-98-A539-01 20 21494302 21494302 C A NKX2-2 Silent p.S2S 0.09 TCGA-98-A539-01 20 2597746 2597746 G C TMC2 Missense_Mutation p.V657L 0.11 tolerated(0.23) possibly_damaging(0.734) TCGA-98-A539-01 20 60885120 60885120 A G LAMA5 Silent p.D3584D 0.28 TCGA-98-A539-01 21 22782641 22782641 G A NCAM2 Missense_Mutation p.G415R 0.23 deleterious(0.03) probably_damaging(0.993) TCGA-98-A539-01 21 31692329 31692329 C G KRTAP26-1 Missense_Mutation p.G9R 0.27 deleterious(0.03) benign(0.233) TCGA-98-A539-01 21 39087400 39087400 G T KCNJ6 Missense_Mutation p.D20E 0.39 deleterious_low_confidence(0.01) benign(0.326) TCGA-98-A539-01 21 45736213 45736213 C T PFKL Silent p.Y278Y 0.37 TCGA-98-A539-01 22 19956161 19956161 G C COMT Missense_Mutation p.E240Q 0.16 tolerated(0.1) benign(0.032) TCGA-98-A539-01 22 20101069 20101069 G A TRMT2A Intron 0.11 TCGA-98-A539-01 22 20812260 20812260 G A KLHL22 Silent p.F380F 0.41 TCGA-98-A539-01 22 26423401 26423401 G T MYO18B Silent p.G2487G 0.34 TCGA-98-A539-01 22 39262900 39262900 C A CBX6 Missense_Mutation p.A185S 0.30 tolerated(0.41) benign(0.007) TCGA-98-A539-01 2 102836441 102836441 G C IL1RL2 Missense_Mutation p.G319R 0.17 deleterious(0.03) probably_damaging(0.937) TCGA-98-A539-01 2 102836442 102836442 G T IL1RL2 Missense_Mutation p.G319V 0.17 deleterious(0.02) possibly_damaging(0.687) TCGA-98-A539-01 2 141072530 141072530 C T LRP1B Missense_Mutation p.G4260E 0.27 probably_damaging(0.982) TCGA-98-A539-01 2 155295140 155295140 G T GALNT13 Missense_Mutation p.D478Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-98-A539-01 2 165561528 165561528 G A COBLL1 Nonsense_Mutation p.R362* 0.13 TCGA-98-A539-01 2 179404899 179404899 A T TTN Missense_Mutation p.L32665Q 0.18 TCGA-98-A539-01 2 179538416 179538416 G T TTN Missense_Mutation p.A11577E 0.19 TCGA-98-A539-01 2 179665404 179665404 T C TTN Missense_Mutation p.T101A 0.17 TCGA-98-A539-01 2 185801306 185801306 G T ZNF804A Missense_Mutation p.G395C 0.10 tolerated(0.05) benign(0.397) TCGA-98-A539-01 2 185801945 185801945 A G ZNF804A Missense_Mutation p.M608V 0.21 tolerated(0.5) benign(0) TCGA-98-A539-01 2 189916066 189916066 G T COL5A2 Missense_Mutation p.P971T 0.23 unknown(0) TCGA-98-A539-01 2 220099828 220099828 G C ANKZF1 Missense_Mutation p.W495C 0.14 deleterious(0.03) benign(0.014) TCGA-98-A539-01 2 238303739 238303739 T A COL6A3 Missense_Mutation p.K67I 0.20 probably_damaging(0.974) TCGA-98-A539-01 2 242078139 242078139 C A PASK Missense_Mutation p.R224L 0.34 tolerated(0.23) benign(0.053) TCGA-98-A539-01 2 24929484 24929484 C A NCOA1 Nonsense_Mutation p.S382* 0.20 TCGA-98-A539-01 2 56420015 56420015 A G CCDC85A Missense_Mutation p.H227R 0.09 tolerated(0.11) benign(0.118) TCGA-98-A539-01 2 89339857 89339857 G T IGKV1-12 Missense_Mutation p.A72D 0.28 tolerated(0.28) benign(0.002) TCGA-98-A539-01 2 89476119 89476119 G A IGKV2-24 Missense_Mutation p.S18F 0.17 deleterious(0.03) benign(0.429) TCGA-98-A539-01 2 90078021 90078021 G C IGKV3D-20 Missense_Mutation p.G20R 0.26 deleterious(0.02) benign(0.26) TCGA-98-A539-01 3 119242697 119242697 G T TIMMDC1 3'UTR 0.15 TCGA-98-A539-01 3 121206421 121206421 C - POLQ Frame_Shift_Del p.S1786Ifs*30 0.22 TCGA-98-A539-01 3 141499324 141499324 G A GRK7 Missense_Mutation p.E241K 0.20 tolerated(0.33) benign(0.19) TCGA-98-A539-01 3 154147062 154147062 G T GPR149 Missense_Mutation p.Q115K 0.24 deleterious(0) probably_damaging(0.999) TCGA-98-A539-01 3 172365789 172365789 G C NCEH1 Missense_Mutation p.T117R 0.26 deleterious(0.01) probably_damaging(0.967) TCGA-98-A539-01 3 185410570 185410570 T A IGF2BP2 Intron 0.26 TCGA-98-A539-01 3 185769879 185769879 C T ETV5 Missense_Mutation p.M417I 0.09 deleterious(0) probably_damaging(0.977) TCGA-98-A539-01 3 21606164 21606164 G T ZNF385D Missense_Mutation p.Q60K 0.26 deleterious(0) possibly_damaging(0.678) TCGA-98-A539-01 3 38739359 38739359 T C SCN10A Missense_Mutation p.I1784M 0.32 deleterious(0.02) benign(0.322) TCGA-98-A539-01 3 49454650 49454650 C G AMT 3'UTR 0.33 TCGA-98-A539-01 3 50325608 50325608 C T IFRD2 3'UTR 0.35 TCGA-98-A539-01 3 52442053 52442053 A T BAP1 Missense_Mutation p.V99E 0.45 deleterious(0) probably_damaging(0.998) TCGA-98-A539-01 3 62631452 62631452 C G CADPS Missense_Mutation p.E424Q 0.31 deleterious(0.03) benign(0.403) TCGA-98-A539-01 3 64084694 64084694 C T PRICKLE2 3'UTR 0.25 TCGA-98-A539-01 3 64084996 64084996 C T PRICKLE2 Missense_Mutation p.A756T 0.31 tolerated(0.75) benign(0.004) TCGA-98-A539-01 4 120181787 120181787 A C USP53 Silent p.A267A 0.06 TCGA-98-A539-01 4 126370145 126370145 A C FAT4 Silent p.T2658T 0.12 TCGA-98-A539-01 4 153250823 153250825 CTT - FBXW7 Splice_Site p.X412_splice 0.21 TCGA-98-A539-01 4 173734848 173734848 G A GALNTL6 Silent p.Q299Q 0.12 TCGA-98-A539-01 4 189022351 189022351 G C TRIML2 Silent p.L63L 0.07 TCGA-98-A539-01 4 189026476 189026476 T A TRIML2 5'UTR 0.10 TCGA-98-A539-01 4 2664842 2664842 C T FAM193A Nonsense_Mutation p.Q345* 0.24 TCGA-98-A539-01 4 2664870 2664870 C G FAM193A Nonsense_Mutation p.S354* 0.27 TCGA-98-A539-01 4 55603372 55603372 G A KIT Missense_Mutation p.D910N 0.25 deleterious(0) possibly_damaging(0.863) TCGA-98-A539-01 4 69681927 69681927 G C UGT2B10 Missense_Mutation p.D64H 0.22 deleterious(0) benign(0.213) TCGA-98-A539-01 4 79400663 79400663 G T FRAS1 Missense_Mutation p.G2745V 0.12 probably_damaging(0.949) TCGA-98-A539-01 4 8621214 8621214 T C CPZ Missense_Mutation p.L610S 0.27 tolerated(0.39) benign(0.004) TCGA-98-A539-01 5 115469869 115469869 T C COMMD10 Silent p.D168D 0.19 TCGA-98-A539-01 5 126738375 126738375 G T MEGF10 Splice_Site p.X306_splice 0.27 TCGA-98-A539-01 5 128362883 128362883 C G SLC27A6 Missense_Mutation p.A438G 0.28 deleterious(0) probably_damaging(0.936) TCGA-98-A539-01 5 140256252 140256252 T C PCDHA12 Missense_Mutation p.S399P 0.39 deleterious_low_confidence(0.05) possibly_damaging(0.495) TCGA-98-A539-01 5 140710656 140710656 A G PCDHGA1 Silent p.L135L 0.28 TCGA-98-A539-01 5 140768850 140768850 G T PCDHGB4 Missense_Mutation p.A467S 0.23 tolerated(0.2) benign(0.177) TCGA-98-A539-01 5 31799662 31799662 G T PDZD2 Missense_Mutation p.G103C 0.42 deleterious(0) probably_damaging(1) TCGA-98-A539-01 5 35876586 35876586 T A IL7R Nonstop_Mutation p.*460Rext*7 0.17 TCGA-98-A539-01 5 41018847 41018847 C T MROH2B Silent p.L873L 0.17 TCGA-98-A539-01 5 41033140 41033140 C A MROH2B Intron 0.38 TCGA-98-A539-01 5 49701583 49701583 C A EMB Missense_Mutation p.W192C 0.14 deleterious(0) probably_damaging(1) TCGA-98-A539-01 5 54581641 54581641 C T DHX29 Missense_Mutation p.R372Q 0.21 tolerated(0.15) benign(0.223) TCGA-98-A539-01 5 79855063 79855063 T A ANKRD34B Missense_Mutation p.N259I 0.28 deleterious(0.04) benign(0.11) TCGA-98-A539-01 5 86675571 86675571 A - RASA1 Frame_Shift_Del p.N838Mfs*4 0.28 TCGA-98-A539-01 6 105406128 105406128 C A LIN28B Silent p.P55P 0.21 TCGA-98-A539-01 6 129641742 129641742 C T LAMA2 Missense_Mutation p.P1373L 0.18 tolerated(0.36) benign(0.005) TCGA-98-A539-01 6 152527378 152527378 A T SYNE1 Silent p.A7648A 0.13 TCGA-98-A539-01 6 160577022 160577022 T G SLC22A1 Missense_Mutation p.L505R 0.05 deleterious(0) possibly_damaging(0.673) TCGA-98-A539-01 6 162622220 162622220 C A PARK2 Silent p.P159P 0.23 TCGA-98-A539-01 6 170639575 170639575 G T FAM120B Missense_Mutation p.V652L 0.16 deleterious(0) probably_damaging(0.995) TCGA-98-A539-01 6 25779476 25779476 C A SLC17A4 3'UTR 0.22 TCGA-98-A539-01 6 28200903 28200903 C T ZSCAN9 Missense_Mutation p.H429Y 0.21 deleterious(0.01) possibly_damaging(0.469) TCGA-98-A539-01 6 29054193 29054193 T C OR2B3 Missense_Mutation p.Y278C 0.12 deleterious(0.04) benign(0.327) TCGA-98-A539-01 6 32163252 32163252 C T NOTCH4 Missense_Mutation p.E1992K 0.23 tolerated_low_confidence(0.33) benign(0.024) TCGA-98-A539-01 6 34101376 34101376 C T GRM4 5'UTR 0.24 TCGA-98-A539-01 6 89816961 89816961 G C SRSF12 Missense_Mutation p.R28G 0.20 tolerated(0.13) possibly_damaging(0.733) TCGA-98-A539-01 7 100683554 100683554 G T MUC17 Missense_Mutation p.V2953F 0.24 benign(0.316) TCGA-98-A539-01 7 136700009 136700009 G T CHRM2 Missense_Mutation p.V133F 0.24 deleterious(0) probably_damaging(0.974) TCGA-98-A539-01 7 141424991 141424991 C A WEE2 Missense_Mutation p.L463I 0.12 tolerated(0.08) probably_damaging(1) TCGA-98-A539-01 7 151848065 151848065 C G KMT2C Missense_Mutation p.E4232Q 0.10 possibly_damaging(0.488) TCGA-98-A539-01 7 158935212 158935212 C A VIPR2 Missense_Mutation p.R26L 0.31 tolerated(0.79) possibly_damaging(0.741) TCGA-98-A539-01 7 4856970 4856970 G T RADIL Nonsense_Mutation p.S543* 0.23 TCGA-98-A539-01 7 53104241 53104241 C A POM121L12 Missense_Mutation p.P293T 0.26 deleterious_low_confidence(0.03) benign(0.012) TCGA-98-A539-01 7 77407896 77407896 G A RSBN1L Missense_Mutation p.G651D 0.09 deleterious(0.02) probably_damaging(1) TCGA-98-A539-01 7 82764745 82764745 C T PCLO Silent p.V707V 0.30 TCGA-98-A539-01 7 88423517 88423517 C A C7orf62 Missense_Mutation p.W247L 0.16 deleterious(0) probably_damaging(0.999) TCGA-98-A539-01 8 101585972 101585972 C T SNX31 3'UTR 0.34 TCGA-98-A539-01 8 110456965 110456965 A C PKHD1L1 Missense_Mutation p.N1623H 0.08 deleterious(0.01) probably_damaging(0.986) TCGA-98-A539-01 8 121209027 121209027 C A COL14A1 Intron 0.15 TCGA-98-A539-01 8 123964723 123964723 G C ZHX2 Missense_Mutation p.E325Q 0.35 deleterious(0) probably_damaging(0.998) TCGA-98-A539-01 8 14022150 14022150 C T SGCZ Silent p.R162R 0.08 TCGA-98-A539-01 8 2040339 2040339 G T MYOM2 Missense_Mutation p.G665V 0.41 deleterious(0.05) possibly_damaging(0.598) TCGA-98-A539-01 8 75262678 75262678 C A GDAP1 5'UTR 0.21 TCGA-98-A539-01 8 76463729 76463729 G T HNF4G Missense_Mutation p.Q153H 0.30 tolerated(0.09) benign(0.036) TCGA-98-A539-01 8 77617824 77617824 C A ZFHX4 Missense_Mutation p.P501T 0.20 possibly_damaging(0.803) TCGA-98-A539-01 8 93029595 93029595 G C RUNX1T1 Intron 0.21 TCGA-98-A539-01 9 112003943 112003943 C T EPB41L4B Intron 0.07 TCGA-98-A539-01 9 116764346 116764346 G A ZNF618 Silent p.A136A 0.26 TCGA-98-A539-01 9 118982216 118982216 A T PAPPA Missense_Mutation p.D640V 0.22 deleterious(0) probably_damaging(0.942) TCGA-98-A539-01 9 119109389 119109389 G C PAPPA Missense_Mutation p.D1289H 0.14 deleterious(0.04) probably_damaging(0.961) TCGA-98-A539-01 9 139275827 139275827 G A SNAPC4 Nonsense_Mutation p.Q779* 0.17 TCGA-98-A539-01 9 21970978 21970987 GCGACATCGC - CDKN2A Frame_Shift_Del p.R124Hfs*19 0.15 TCGA-98-A539-01 9 32784166 32784166 C A TMEM215 5'UTR 0.20 TCGA-98-A539-01 9 34405948 34405950 GGC - FAM219A In_Frame_Del p.A25del 0.52 TCGA-98-A539-01 9 34512336 34512336 G C DNAI1 Missense_Mutation p.R468T 0.12 tolerated(0.11) benign(0) TCGA-98-A539-01 9 37744603 37744603 C G FRMPD1 Silent p.A858A 0.25 TCGA-98-A539-01 9 84235453 84235453 G T TLE1 Missense_Mutation p.P205Q 0.25 deleterious(0.04) benign(0.013) TCGA-98-A539-01 9 87549181 87549181 C T NTRK2 Nonsense_Mutation p.Q580* 0.31 TCGA-98-A539-01 X 100104301 100104301 G T NOX1 Missense_Mutation p.R471S 0.48 tolerated(0.08) possibly_damaging(0.699) TCGA-98-A539-01 X 106171430 106171430 C A CLDN2 5'UTR 0.50 TCGA-98-A539-01 X 110416269 110416269 C G PAK3 Missense_Mutation p.P300A 0.57 deleterious(0) benign(0.36) TCGA-98-A539-01 X 122459974 122459974 C A GRIA3 Missense_Mutation p.F202L 0.52 tolerated(0.09) benign(0.216) TCGA-98-A539-01 X 144904802 144904802 C T SLITRK2 Missense_Mutation p.P287S 0.44 tolerated(0.37) benign(0.074) TCGA-98-A539-01 X 53616756 53616756 C T HUWE1 Silent p.E1404E 0.22 TCGA-98-A539-01 X 78427127 78427127 C T GPR174 Missense_Mutation p.T208M 0.43 tolerated(0.18) probably_damaging(0.957) TCGA-98-A539-01 X 86869437 86869437 G T KLHL4 Missense_Mutation p.R197S 0.42 deleterious(0) probably_damaging(0.999) TCGA-98-A539-01 Y 15447466 15447466 T A UTY Silent p.S840S 0.53 TCGA-98-A53A-01 10 104242828 104242828 C T ACTR1A Silent p.K230K 0.43 TCGA-98-A53A-01 10 124377727 124377727 G T DMBT1 Missense_Mutation p.G1567C 0.52 deleterious(0) probably_damaging(1) TCGA-98-A53A-01 10 129875914 129875914 G T PTPRE Missense_Mutation p.V587L 0.58 deleterious(0.02) benign(0.357) TCGA-98-A53A-01 10 135053294 135053294 T C VENTX Missense_Mutation p.L119P 0.54 tolerated(0.32) benign(0.324) TCGA-98-A53A-01 10 14816316 14816316 G A FAM107B Missense_Mutation p.A116V 0.26 tolerated_low_confidence(0.28) benign(0.011) TCGA-98-A53A-01 10 15688945 15688945 G T ITGA8 Silent p.L369L 0.63 TCGA-98-A53A-01 10 17726691 17726691 G T STAM Missense_Mutation p.R48L 0.55 deleterious(0) benign(0.275) TCGA-98-A53A-01 10 26880237 26880237 A T LINC00264 Splice_Site 0.42 TCGA-98-A53A-01 10 30653677 30653677 C A AL161651.1 3'Flank 0.77 TCGA-98-A53A-01 10 38344144 38344144 A C ZNF33A Missense_Mutation p.K364N 0.51 tolerated(0.06) probably_damaging(0.972) TCGA-98-A53A-01 10 43869125 43869125 G A FXYD4 5'UTR 0.61 TCGA-98-A53A-01 10 73464766 73464767 CG A CDH23 Frame_Shift_Del p.S536Rfs*45 0.30 TCGA-98-A53A-01 10 89711889 89711890 CA - PTEN Frame_Shift_Del p.Q171Efs*8 0.29 TCGA-98-A53A-01 11 102593163 102593163 T A MMP8 Missense_Mutation p.Y115F 0.34 deleterious(0) probably_damaging(0.976) TCGA-98-A53A-01 11 117308720 117308720 C A DSCAML1 Missense_Mutation p.K1501N 0.33 tolerated(0.07) possibly_damaging(0.521) TCGA-98-A53A-01 11 123624334 123624334 G T OR6X1 Missense_Mutation p.A298D 0.23 deleterious(0) probably_damaging(0.984) TCGA-98-A53A-01 11 123900900 123900900 A C OR10G8 Missense_Mutation p.T191P 0.28 deleterious(0.02) probably_damaging(1) TCGA-98-A53A-01 11 43283799 43283799 G A HNRNPKP3 RNA 0.18 TCGA-98-A53A-01 11 43284464 43284464 C T HNRNPKP3 RNA 0.12 TCGA-98-A53A-01 11 55587185 55587185 C T OR5D18 Missense_Mutation p.P27L 0.34 tolerated(0.13) benign(0.008) TCGA-98-A53A-01 11 55861588 55861588 C G OR8I2 Missense_Mutation p.Q269E 0.34 tolerated(0.19) benign(0.015) TCGA-98-A53A-01 11 55944378 55944378 T A OR5J2 Silent p.S95S 0.38 TCGA-98-A53A-01 11 56237263 56237263 G A OR5M3 Silent p.S237S 0.33 TCGA-98-A53A-01 11 58391863 58391863 G C CNTF Missense_Mutation p.W157C 0.32 deleterious(0.04) probably_damaging(0.992) TCGA-98-A53A-01 11 62296751 62296751 G A AHNAK Missense_Mutation p.P1713L 0.37 possibly_damaging(0.851) TCGA-98-A53A-01 11 62361985 62361986 CA - MTA2 Splice_Site p.X564_splice 0.22 TCGA-98-A53A-01 11 64124688 64124688 G A CCDC88B 3'UTR 0.42 TCGA-98-A53A-01 11 64602436 64602436 C A CDC42BPG Splice_Site p.X687_splice 0.27 TCGA-98-A53A-01 11 66113394 66113394 C A B3GNT1 3'UTR 0.28 TCGA-98-A53A-01 11 66372812 66372812 C A CCS Missense_Mutation p.H164Q 0.37 deleterious(0.01) probably_damaging(0.984) TCGA-98-A53A-01 11 68837917 68837917 C A TPCN2 Silent p.S283S 0.31 TCGA-98-A53A-01 11 92624030 92624030 C A FAT3 Silent p.G4507G 0.37 TCGA-98-A53A-01 11 93800850 93800850 A G HEPHL1 Missense_Mutation p.T333A 0.33 tolerated(1) benign(0.001) TCGA-98-A53A-01 11 93808412 93808412 T C HEPHL1 Missense_Mutation p.V526A 0.33 tolerated(0.38) benign(0.032) TCGA-98-A53A-01 12 101581295 101581295 T A SLC5A8 Splice_Site p.X278_splice 0.31 TCGA-98-A53A-01 12 111318918 111318918 G T CCDC63 Splice_Site p.X224_splice 0.17 TCGA-98-A53A-01 12 113321120 113321121 CT - RPH3A Frame_Shift_Del p.L451Afs*10 0.17 TCGA-98-A53A-01 12 120591202 120591202 T A GCN1L1 Missense_Mutation p.N1293Y 0.35 possibly_damaging(0.73) TCGA-98-A53A-01 12 120608071 120608071 T C GCN1L1 Missense_Mutation p.E474G 0.34 probably_damaging(0.999) TCGA-98-A53A-01 12 124362370 124362370 C A DNAH10 Missense_Mutation p.P2645T 0.30 probably_damaging(0.998) TCGA-98-A53A-01 12 125900205 125900205 G A TMEM132B Missense_Mutation p.R358H 0.27 tolerated(0.18) benign(0.001) TCGA-98-A53A-01 12 132399650 132399650 G T ULK1 Missense_Mutation p.G466C 0.15 deleterious(0.04) possibly_damaging(0.681) TCGA-98-A53A-01 12 1955782 1955782 C A CACNA2D4 Missense_Mutation p.G774C 0.24 deleterious(0.01) possibly_damaging(0.873) TCGA-98-A53A-01 12 21471749 21471749 G - SLCO1A2 Frame_Shift_Del p.L57* 0.21 TCGA-98-A53A-01 12 25671841 25671841 A T IFLTD1 Nonsense_Mutation p.Y359* 0.35 TCGA-98-A53A-01 12 29630477 29630477 T C OVCH1 Silent p.Q368Q 0.37 TCGA-98-A53A-01 12 53553905 53553905 G A CSAD Missense_Mutation p.R416W 0.58 deleterious(0) benign(0.02) TCGA-98-A53A-01 12 53687157 53687157 C T ESPL1 Missense_Mutation p.P2088S 0.64 deleterious(0.03) benign(0.125) TCGA-98-A53A-01 12 56420666 56420666 G C IKZF4 Missense_Mutation p.D130H 0.55 deleterious(0.02) benign(0.068) TCGA-98-A53A-01 12 56705032 56705032 C T CNPY2 Missense_Mutation p.R124Q 0.15 tolerated(0.51) benign(0.094) TCGA-98-A53A-01 12 57593116 57593116 G A LRP1 Silent p.T3266T 0.05 TCGA-98-A53A-01 12 69050939 69050939 G T RAP1B Missense_Mutation p.R176L 0.27 tolerated(0.13) benign(0) TCGA-98-A53A-01 12 69050940 69050940 C T RAP1B Silent p.R176R 0.27 TCGA-98-A53A-01 12 80729917 80729917 C A OTOGL Missense_Mutation p.P1524T 0.32 deleterious(0) probably_damaging(1) TCGA-98-A53A-01 12 80729918 80729918 C A OTOGL Missense_Mutation p.P1524H 0.32 deleterious(0) probably_damaging(1) TCGA-98-A53A-01 12 85449602 85449602 G A LRRIQ1 Missense_Mutation p.R344K 0.26 tolerated(0.43) benign(0.036) TCGA-98-A53A-01 12 977686 977686 C A WNK1 Intron 0.33 TCGA-98-A53A-01 13 34540262 34540262 A T RFC3 Nonstop_Mutation p.*306Cext*19 0.57 TCGA-98-A53A-01 13 95055372 95055372 C A GPC6 Missense_Mutation p.D523E 0.62 tolerated(0.46) benign(0.023) TCGA-98-A53A-01 14 105236696 105236696 C A AKT1 Silent p.S475S 0.58 TCGA-98-A53A-01 14 105346698 105346699 AC - CEP170B Frame_Shift_Del p.P139Ifs*36 0.37 TCGA-98-A53A-01 14 105415494 105415494 C A AHNAK2 Silent p.L2098L 0.17 TCGA-98-A53A-01 14 19553745 19553745 G T POTEG Missense_Mutation p.R110M 0.09 deleterious(0) benign(0.322) TCGA-98-A53A-01 14 19566068 19566068 A - POTEG Frame_Shift_Del p.N372Tfs*8 0.12 TCGA-98-A53A-01 14 20216202 20216202 C G OR4Q3 Missense_Mutation p.L206V 0.30 tolerated(0.12) benign(0.038) TCGA-98-A53A-01 14 20483253 20483253 C G OR4K14 Missense_Mutation p.V34L 0.55 tolerated(1) benign(0) TCGA-98-A53A-01 14 20502330 20502330 C A OR4K13 Missense_Mutation p.Q196H 0.49 deleterious(0.01) possibly_damaging(0.863) TCGA-98-A53A-01 14 22520818 22520818 G C TRAV21 Missense_Mutation p.Q13H 0.70 tolerated(0.08) unknown(0) TCGA-98-A53A-01 14 44974614 44974614 T A FSCB Missense_Mutation p.Q526L 0.57 tolerated(0.1) possibly_damaging(0.803) TCGA-98-A53A-01 14 91467448 91467448 C A RPS6KA5 Missense_Mutation p.K53N 0.47 deleterious(0.01) probably_damaging(0.979) TCGA-98-A53A-01 14 94845717 94845717 C T SERPINA1 Intron 0.57 TCGA-98-A53A-01 14 95670325 95670325 T C CLMN Missense_Mutation p.K454R 0.49 tolerated_low_confidence(0.21) benign(0.004) TCGA-98-A53A-01 15 23890303 23890303 G - MAGEL2 Frame_Shift_Del p.Q260Rfs*41 0.30 TCGA-98-A53A-01 15 28235788 28235788 C T OCA2 Silent p.V350V 0.32 TCGA-98-A53A-01 15 28566537 28566537 C T HERC2 Missense_Mutation p.D15N 0.12 benign(0.014) TCGA-98-A53A-01 15 41819772 41819772 T C RPAP1 Missense_Mutation p.H487R 0.36 tolerated(0.94) benign(0.003) TCGA-98-A53A-01 15 44143345 44143345 T C WDR76 Missense_Mutation p.C365R 0.34 deleterious(0) benign(0.403) TCGA-98-A53A-01 15 53081146 53081146 C A ONECUT1 Missense_Mutation p.Q312H 0.36 deleterious(0) probably_damaging(0.999) TCGA-98-A53A-01 15 58247467 58247467 C A ALDH1A2 Missense_Mutation p.M495I 0.31 deleterious(0.01) benign(0.052) TCGA-98-A53A-01 15 65917790 65917790 C A SLC24A1 Missense_Mutation p.H458N 0.29 benign(0.403) TCGA-98-A53A-01 15 70960629 70960629 G A UACA Silent p.R798R 0.36 TCGA-98-A53A-01 15 78393493 78393493 T C SH2D7 Missense_Mutation p.S300P 0.20 tolerated(0.14) benign(0.006) TCGA-98-A53A-01 15 78819788 78819788 C T HYKK Missense_Mutation p.P182S 0.30 tolerated(0.09) possibly_damaging(0.759) TCGA-98-A53A-01 15 79066587 79066587 C T ADAMTS7 Silent p.L644L 0.41 TCGA-98-A53A-01 15 89863996 89863996 C G POLG Splice_Site p.X994_splice 0.20 TCGA-98-A53A-01 15 90023510 90023510 C A RHCG Missense_Mutation p.D218Y 0.33 deleterious(0) probably_damaging(0.992) TCGA-98-A53A-01 16 21690513 21690513 G C OTOA Missense_Mutation p.D54H 0.55 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-98-A53A-01 16 30749163 30749163 C G SRCAP Missense_Mutation p.S2601C 0.50 unknown(0) TCGA-98-A53A-01 16 30749356 30749356 G - SRCAP Frame_Shift_Del p.E2666Sfs*12 0.39 TCGA-98-A53A-01 16 31367992 31367992 G C ITGAX Missense_Mutation p.G64R 0.50 deleterious(0) probably_damaging(1) TCGA-98-A53A-01 16 31485470 31485470 C T TGFB1I1 Intron 0.57 TCGA-98-A53A-01 16 48381584 48381584 G T LONP2 Missense_Mutation p.S702I 0.56 deleterious(0) possibly_damaging(0.548) TCGA-98-A53A-01 16 54318194 54318195 TT - IRX3 Frame_Shift_Del p.K472Vfs*33 0.29 TCGA-98-A53A-01 16 56924248 56924248 C A SLC12A3 Missense_Mutation p.S783Y 0.51 deleterious(0) possibly_damaging(0.846) TCGA-98-A53A-01 16 72991758 72991758 C - ZFHX3 Frame_Shift_Del p.E763Sfs*61 0.41 TCGA-98-A53A-01 16 815182 815182 C A MSLN Missense_Mutation p.R195S 0.64 tolerated(0.12) benign(0.042) TCGA-98-A53A-01 16 87367700 87367700 G A FBXO31 Missense_Mutation p.P397S 0.37 tolerated(0.35) benign(0) TCGA-98-A53A-01 17 10356163 10356163 G T MYH4 Silent p.A1066A 0.48 TCGA-98-A53A-01 17 11532903 11532903 T C DNAH9 Splice_Site p.X506_splice 0.48 TCGA-98-A53A-01 17 16055297 16055297 G T NCOR1 Missense_Mutation p.P269T 0.41 probably_damaging(0.999) TCGA-98-A53A-01 17 39847249 39847249 C T EIF1 3'UTR 0.33 TCGA-98-A53A-01 17 40253632 40253632 G A DHX58 3'UTR 0.38 TCGA-98-A53A-01 17 40714537 40714537 C T COASY Intron 0.20 TCGA-98-A53A-01 17 41170128 41170128 C A VAT1 Nonsense_Mutation p.E231* 0.29 TCGA-98-A53A-01 17 41243777 41243778 CT - BRCA1 Frame_Shift_Del p.E1257Gfs*9 0.28 TCGA-98-A53A-01 17 41958858 41958858 T C MPP2 Missense_Mutation p.I261V 0.32 tolerated(0.2) probably_damaging(0.997) TCGA-98-A53A-01 17 42030670 42030670 C A PYY Missense_Mutation p.R61L 0.21 deleterious(0) probably_damaging(0.976) TCGA-98-A53A-01 17 42744856 42744856 C - C17orf104 Frame_Shift_Del p.P527Qfs*36 0.24 TCGA-98-A53A-01 17 4876169 4876169 G A CAMTA2 Missense_Mutation p.R823W 0.50 deleterious(0) probably_damaging(0.998) TCGA-98-A53A-01 17 4936150 4936150 C A SLC52A1 3'UTR 0.58 TCGA-98-A53A-01 17 54403691 54403691 T C ANKFN1 Missense_Mutation p.S58P 0.29 tolerated_low_confidence(0.27) benign(0.022) TCGA-98-A53A-01 17 56572370 56572370 C T MTMR4 Missense_Mutation p.E1045K 0.06 deleterious(0.01) possibly_damaging(0.643) TCGA-98-A53A-01 17 57076695 57076695 C A TRIM37 3'UTR 0.28 TCGA-98-A53A-01 17 60683490 60683490 G C TLK2 Splice_Site p.X620_splice 0.36 TCGA-98-A53A-01 17 66865866 66865866 G T ABCA8 Silent p.A1522A 0.28 TCGA-98-A53A-01 17 67170473 67170473 G C ABCA10 Missense_Mutation p.I1037M 0.37 deleterious(0.03) possibly_damaging(0.457) TCGA-98-A53A-01 17 6927858 6927858 C - BCL6B Frame_Shift_Del p.S183Vfs*20 0.37 TCGA-98-A53A-01 17 73235997 73235997 T C GGA3 Missense_Mutation p.T486A 0.29 tolerated(0.49) benign(0.001) TCGA-98-A53A-01 17 73780809 73780809 C T UNK 5'Flank 0.14 TCGA-98-A53A-01 17 74396257 74396257 C A UBE2O Missense_Mutation p.A376S 0.25 tolerated(0.16) benign(0.32) TCGA-98-A53A-01 17 74625360 74625360 C A ST6GALNAC1 Missense_Mutation p.A189S 0.33 benign(0.034) TCGA-98-A53A-01 17 7578474 7578475 - G TP53 Frame_Shift_Ins p.P153Afs*28 0.28 TCGA-98-A53A-01 17 79805159 79805159 T C P4HB Missense_Mutation p.K230R 0.23 tolerated(0.37) benign(0.001) TCGA-98-A53A-01 17 8172467 8172467 C A PFAS Missense_Mutation p.A1301D 0.54 deleterious(0) benign(0.367) TCGA-98-A53A-01 18 13885081 13885081 C T MC2R Missense_Mutation p.R146H 0.53 deleterious(0) benign(0.033) TCGA-98-A53A-01 18 55103745 55103745 A G ONECUT2 Missense_Mutation p.H266R 0.27 deleterious(0.05) benign(0.201) TCGA-98-A53A-01 18 55103765 55103765 G A ONECUT2 Missense_Mutation p.G273S 0.27 tolerated(0.24) benign(0.033) TCGA-98-A53A-01 18 55103766 55103766 G T ONECUT2 Missense_Mutation p.G273V 0.27 tolerated(0.06) benign(0.325) TCGA-98-A53A-01 18 61558735 61558735 G T SERPINB2 Silent p.L19L 0.35 TCGA-98-A53A-01 18 71803103 71803103 T C FBXO15 Splice_Site p.X76_splice 0.30 TCGA-98-A53A-01 19 11888543 11888543 G A ZNF441 Missense_Mutation p.D41N 0.42 deleterious(0.01) possibly_damaging(0.677) TCGA-98-A53A-01 19 22362303 22362303 G C ZNF676 3'UTR 0.50 TCGA-98-A53A-01 19 22574410 22574410 C T ZNF98 Missense_Mutation p.E543K 0.43 tolerated(0.08) benign(0.022) TCGA-98-A53A-01 19 30935725 30935725 C A ZNF536 Missense_Mutation p.S419Y 0.54 deleterious(0.01) possibly_damaging(0.486) TCGA-98-A53A-01 19 32844357 32844357 A T ZNF507 Missense_Mutation p.R207S 0.25 tolerated(0.74) benign(0.027) TCGA-98-A53A-01 19 34954941 34954941 C A UBA2 Missense_Mutation p.H503Q 0.25 tolerated(0.43) benign(0) TCGA-98-A53A-01 19 37441212 37441212 G C ZNF568 Missense_Mutation p.G386A 0.51 deleterious(0) probably_damaging(0.999) TCGA-98-A53A-01 19 3822111 3822111 C A ZFR2 Missense_Mutation p.V487L 0.27 tolerated(1) benign(0.125) TCGA-98-A53A-01 19 38572229 38572229 C A SIPA1L3 Silent p.P8P 0.22 TCGA-98-A53A-01 19 39390219 39390219 A T SIRT2 5'UTR 0.31 TCGA-98-A53A-01 19 40318226 40318226 G T DYRK1B Missense_Mutation p.A293D 0.47 deleterious(0) probably_damaging(0.982) TCGA-98-A53A-01 19 40360930 40360930 G A FCGBP Missense_Mutation p.R5160C 0.22 probably_damaging(0.99) TCGA-98-A53A-01 19 42621513 42621513 C G POU2F2 Missense_Mutation p.K64N 0.38 tolerated(0.05) probably_damaging(0.983) TCGA-98-A53A-01 19 43433647 43433647 A T PSG7 Missense_Mutation p.I219K 0.33 deleterious(0) probably_damaging(0.974) TCGA-98-A53A-01 19 43967380 43967380 G A LYPD3 Missense_Mutation p.R148W 0.27 deleterious(0.02) possibly_damaging(0.878) TCGA-98-A53A-01 19 46122405 46122405 C A EML2 Silent p.R590R 0.40 TCGA-98-A53A-01 19 46122406 46122406 C A EML2 Missense_Mutation p.R590L 0.40 tolerated(0.43) benign(0.009) TCGA-98-A53A-01 19 47503744 47503746 CTT - ARHGAP35 In_Frame_Del p.F1436del 0.31 TCGA-98-A53A-01 19 52115436 52115436 C A SIGLEC5 3'UTR 0.38 TCGA-98-A53A-01 19 52130826 52130826 A G SIGLEC5 Missense_Mutation p.W391R 0.55 deleterious(0) probably_damaging(0.998) TCGA-98-A53A-01 19 52772830 52772830 A T ZNF766 5'UTR 0.50 TCGA-98-A53A-01 19 8969277 8969277 G C MUC16 Missense_Mutation p.A14356G 0.53 probably_damaging(0.995) TCGA-98-A53A-01 19 9024950 9024950 G A MUC16 Silent p.H12304H 0.59 TCGA-98-A53A-01 19 9073368 9073368 G C MUC16 Missense_Mutation p.P4693R 0.51 unknown(0) TCGA-98-A53A-01 1 102312581 102312581 G T OLFM3 Intron 0.33 TCGA-98-A53A-01 1 150727506 150727507 TC - CTSS Frame_Shift_Del p.K124Rfs*5 0.27 TCGA-98-A53A-01 1 152057524 152057524 G T TCHHL1 Silent p.P878P 0.29 TCGA-98-A53A-01 1 152187989 152187989 G T HRNR Missense_Mutation p.S2039Y 0.04 unknown(0) TCGA-98-A53A-01 1 154164408 154164408 C A TPM3 Missense_Mutation p.E29D 0.39 tolerated(1) benign(0.002) TCGA-98-A53A-01 1 155340441 155340441 C A ASH1L Missense_Mutation p.R2180S 0.31 deleterious_low_confidence(0.01) probably_damaging(0.985) TCGA-98-A53A-01 1 156517923 156517923 T A IQGAP3 Missense_Mutation p.K749M 0.32 deleterious(0.01) possibly_damaging(0.841) TCGA-98-A53A-01 1 158592961 158592961 G T SPTA1 Missense_Mutation p.Q1978K 0.28 tolerated(0.29) benign(0.015) TCGA-98-A53A-01 1 158592963 158592963 A G SPTA1 Missense_Mutation p.L1977P 0.28 deleterious(0) probably_damaging(0.984) TCGA-98-A53A-01 1 158909030 158909030 C A PYHIN1 Nonsense_Mutation p.S191* 0.35 TCGA-98-A53A-01 1 169390815 169390815 C A CCDC181 Missense_Mutation p.G285V 0.31 tolerated(0.14) possibly_damaging(0.698) TCGA-98-A53A-01 1 175046583 175046583 C T TNN Missense_Mutation p.P10L 0.35 tolerated_low_confidence(0.33) benign(0.111) TCGA-98-A53A-01 1 176564162 176564162 G T PAPPA2 Missense_Mutation p.K474N 0.41 tolerated(0.49) benign(0.002) TCGA-98-A53A-01 1 177030318 177030318 G C ASTN1 Missense_Mutation p.H123D 0.31 deleterious_low_confidence(0.04) probably_damaging(0.976) TCGA-98-A53A-01 1 183495879 183495879 G T SMG7 Missense_Mutation p.C154F 0.23 tolerated(0.05) probably_damaging(1) TCGA-98-A53A-01 1 18961728 18961728 C A PAX7 Missense_Mutation p.P149T 0.31 deleterious(0) probably_damaging(1) TCGA-98-A53A-01 1 196920027 196920027 C A CFHR2 Nonsense_Mutation p.S100* 0.26 TCGA-98-A53A-01 1 198509711 198509711 C T ATP6V1G3 Missense_Mutation p.E24K 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-98-A53A-01 1 207107799 207107799 G T PIGR Silent p.A557A 0.25 TCGA-98-A53A-01 1 208270219 208270219 C A PLXNA2 Missense_Mutation p.V581L 0.16 tolerated(0.54) benign(0) TCGA-98-A53A-01 1 20827678 20827678 C G MUL1 Missense_Mutation p.M188I 0.29 deleterious(0.03) benign(0.428) TCGA-98-A53A-01 1 21585230 21585233 AGAC - ECE1 Frame_Shift_Del p.V239Mfs*13 0.39 TCGA-98-A53A-01 1 217793698 217793698 T G GPATCH2 Missense_Mutation p.K67T 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-98-A53A-01 1 224463112 224463112 T C NVL Missense_Mutation p.K671E 0.51 deleterious(0) benign(0.254) TCGA-98-A53A-01 1 229643912 229643912 G A NUP133 Missense_Mutation p.P29S 0.50 tolerated(0.26) probably_damaging(0.968) TCGA-98-A53A-01 1 237947554 237947554 G T RYR2 Missense_Mutation p.G4181V 0.27 probably_damaging(0.916) TCGA-98-A53A-01 1 23885473 23885473 T A ID3 Missense_Mutation p.D113V 0.42 deleterious(0) possibly_damaging(0.483) TCGA-98-A53A-01 1 240656536 240656536 C A GREM2 Missense_Mutation p.Q80H 0.28 tolerated(0.05) probably_damaging(0.96) TCGA-98-A53A-01 1 241094066 241094066 G T RGS7 Silent p.T112T 0.41 TCGA-98-A53A-01 1 248458788 248458788 G T OR2T12 Silent p.A31A 0.32 TCGA-98-A53A-01 1 248737949 248737949 A C OR2T34 Missense_Mutation p.F37C 0.41 tolerated(0.12) possibly_damaging(0.819) TCGA-98-A53A-01 1 26507079 26507079 G T CNKSR1 Missense_Mutation p.G63V 0.41 deleterious(0.01) probably_damaging(0.985) TCGA-98-A53A-01 1 28476617 28476617 C T PTAFR Missense_Mutation p.E306K 0.30 tolerated(0.15) benign(0.118) TCGA-98-A53A-01 1 32092452 32092452 C A HCRTR1 Nonsense_Mutation p.C383* 0.31 TCGA-98-A53A-01 1 32265087 32265087 C A SPOCD1 Splice_Site p.X595_splice 0.43 TCGA-98-A53A-01 1 65117980 65117980 C T CACHD1 Silent p.L458L 0.33 TCGA-98-A53A-01 1 70505453 70505453 A G LRRC7 Missense_Mutation p.I1278V 0.29 deleterious(0) probably_damaging(0.946) TCGA-98-A53A-01 1 71873237 71873237 C A NEGR1 Missense_Mutation p.Q319H 0.33 tolerated(0.24) possibly_damaging(0.719) TCGA-98-A53A-01 1 77510216 77510216 C - ST6GALNAC5 Frame_Shift_Del p.R198Gfs*2 0.28 TCGA-98-A53A-01 1 84369781 84369781 T A TTLL7 Missense_Mutation p.D730V 0.31 deleterious(0) possibly_damaging(0.883) TCGA-98-A53A-01 1 97547986 97547986 C A DPYD Missense_Mutation p.G936V 0.33 tolerated(0.13) benign(0.063) TCGA-98-A53A-01 20 23334956 23334956 T G NXT1 Missense_Mutation p.V93G 0.28 deleterious(0) probably_damaging(0.982) TCGA-98-A53A-01 20 2380222 2380222 G C TGM6 Missense_Mutation p.D230H 0.22 deleterious(0) probably_damaging(0.996) TCGA-98-A53A-01 20 2464022 2464022 C T ZNF343 Missense_Mutation p.G529S 0.25 tolerated(0.12) possibly_damaging(0.725) TCGA-98-A53A-01 20 31673912 31673912 C T BPIFB4 Silent p.L290L 0.30 TCGA-98-A53A-01 20 35219442 35219442 G T TGIF2 Missense_Mutation p.G108C 0.32 tolerated(0.05) benign(0.187) TCGA-98-A53A-01 20 37357231 37357231 G T SLC32A1 Silent p.V509V 0.28 TCGA-98-A53A-01 20 42697429 42697429 C T TOX2 3'UTR 0.45 TCGA-98-A53A-01 20 47692038 47692038 C G CSE1L Nonsense_Mutation p.S439* 0.33 TCGA-98-A53A-01 20 49510965 49510965 C G ADNP Missense_Mutation p.V96L 0.33 tolerated(0.07) probably_damaging(0.991) TCGA-98-A53A-01 21 10916383 10916383 A C TPTE Missense_Mutation p.I421M 0.15 deleterious(0) probably_damaging(0.983) TCGA-98-A53A-01 21 11012981 11012981 C T TPTE Intron 0.06 TCGA-98-A53A-01 21 11058305 11058305 G A BAGE2 RNA 0.08 TCGA-98-A53A-01 21 19713758 19713758 C A TMPRSS15 Missense_Mutation p.L512F 0.32 tolerated(0.05) possibly_damaging(0.786) TCGA-98-A53A-01 21 38555159 38555159 A T TTC3 Missense_Mutation p.Q1567H 0.35 deleterious(0.03) benign(0.321) TCGA-98-A53A-01 21 42080569 42080569 A T DSCAM Missense_Mutation p.W58R 0.40 deleterious(0) probably_damaging(1) TCGA-98-A53A-01 21 43983964 43983967 TGTT - SLC37A1 Frame_Shift_Del p.F372Tfs*13 0.34 TCGA-98-A53A-01 21 45173557 45173557 C T PDXK Missense_Mutation p.A239V 0.29 deleterious(0) probably_damaging(0.972) TCGA-98-A53A-01 22 16448955 16448955 C G OR11H1 Missense_Mutation p.G284R 0.60 tolerated(0.06) benign(0.25) TCGA-98-A53A-01 22 25601279 25601279 G T CRYBB3 Missense_Mutation p.W140C 0.40 deleterious(0.01) probably_damaging(0.997) TCGA-98-A53A-01 22 26173670 26173670 G C MYO18B Missense_Mutation p.A664P 0.17 deleterious(0) probably_damaging(0.952) TCGA-98-A53A-01 22 31019013 31019013 G T TCN2 Missense_Mutation p.A389S 0.25 tolerated(0.11) possibly_damaging(0.795) TCGA-98-A53A-01 22 38877230 38877233 TCTC - KDELR3 Frame_Shift_Del p.F122Lfs*15 0.33 TCGA-98-A53A-01 22 44330546 44330546 G A PNPLA3 Missense_Mutation p.G253S 0.39 deleterious(0.01) possibly_damaging(0.88) TCGA-98-A53A-01 22 50882466 50882466 G A PPP6R2 Silent p.V891V 0.45 TCGA-98-A53A-01 2 102968104 102968104 C A IL1RL1 Missense_Mutation p.A465D 0.37 deleterious(0) probably_damaging(1) TCGA-98-A53A-01 2 105859356 105859356 C A GPR45 Silent p.P347P 0.22 TCGA-98-A53A-01 2 11052758 11052758 A G KCNF1 Missense_Mutation p.D69G 0.28 deleterious(0) probably_damaging(0.999) TCGA-98-A53A-01 2 119748192 119748192 G A MARCO Missense_Mutation p.G364E 0.31 deleterious(0) unknown(0) TCGA-98-A53A-01 2 125555741 125555741 A C CNTNAP5 Missense_Mutation p.K1020Q 0.43 tolerated(0.21) probably_damaging(0.947) TCGA-98-A53A-01 2 125555743 125555743 G C CNTNAP5 Missense_Mutation p.K1020N 0.44 tolerated(0.06) probably_damaging(0.947) TCGA-98-A53A-01 2 128855048 128855048 G T UGGT1 Missense_Mutation p.W35L 0.39 tolerated(0.55) benign(0) TCGA-98-A53A-01 2 130832643 130832643 T A POTEF Missense_Mutation p.H801L 0.31 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-98-A53A-01 2 138000043 138000043 C A THSD7B Silent p.R723R 0.39 TCGA-98-A53A-01 2 145182387 145182387 G T ZEB2 Missense_Mutation p.Q127K 0.26 tolerated(0.48) benign(0.007) TCGA-98-A53A-01 2 150426396 150426396 T C MMADHC 3'UTR 0.21 TCGA-98-A53A-01 2 160803179 160803179 T A PLA2R1 Intron 0.30 TCGA-98-A53A-01 2 166621540 166621540 C A GALNT3 Missense_Mutation p.C181F 0.29 tolerated(0.05) probably_damaging(0.997) TCGA-98-A53A-01 2 176972098 176972098 C A HOXD11 Missense_Mutation p.D5E 0.38 tolerated(0.07) benign(0.115) TCGA-98-A53A-01 2 179486460 179486462 CTT - TTN In_Frame_Del p.E15030del 0.28 TCGA-98-A53A-01 2 179536782 179536782 T C TTN Missense_Mutation p.R11715G 0.41 TCGA-98-A53A-01 2 185802836 185802836 G T ZNF804A Missense_Mutation p.G905C 0.33 tolerated(0.11) benign(0.019) TCGA-98-A53A-01 2 18737036 18737036 C T RDH14 Silent p.G144G 0.32 TCGA-98-A53A-01 2 188225407 188225407 T C CALCRL Silent p.E233E 0.22 TCGA-98-A53A-01 2 1926201 1926201 G T MYT1L Missense_Mutation p.A447D 0.25 deleterious(0.02) probably_damaging(0.968) TCGA-98-A53A-01 2 207173192 207173192 C A ZDBF2 Missense_Mutation p.H1314N 0.51 tolerated(0.21) benign(0.001) TCGA-98-A53A-01 2 207509309 207509309 C T AC010731.4 RNA 0.16 TCGA-98-A53A-01 2 207989079 207989079 G C KLF7 Nonsense_Mutation p.S51* 0.29 TCGA-98-A53A-01 2 209010554 209010554 A T CRYGB Missense_Mutation p.Y66N 0.33 tolerated(0.06) possibly_damaging(0.684) TCGA-98-A53A-01 2 21230900 21230900 C G APOB Missense_Mutation p.S2947T 0.34 benign(0.115) TCGA-98-A53A-01 2 216274833 216274833 T A FN1 Missense_Mutation p.N649I 0.37 deleterious(0.03) benign(0.01) TCGA-98-A53A-01 2 220168534 220168534 G A PTPRN Silent p.D100D 0.23 TCGA-98-A53A-01 2 220252577 220252577 C G DNPEP 5'UTR 0.33 TCGA-98-A53A-01 2 225360561 225360561 T - CUL3 Frame_Shift_Del p.K610Nfs*44 0.28 TCGA-98-A53A-01 2 228137828 228137828 A T COL4A3 Missense_Mutation p.E641V 0.21 unknown(0) TCGA-98-A53A-01 2 228416728 228416728 G C AGFG1 Missense_Mutation p.A502P 0.38 tolerated(0.17) benign(0.236) TCGA-98-A53A-01 2 228551993 228551993 C A SLC19A3 3'UTR 0.10 TCGA-98-A53A-01 2 241569771 241569771 G A GPR35 Silent p.A165A 0.41 TCGA-98-A53A-01 2 25994392 25994392 G A ASXL2 Nonsense_Mutation p.Q141* 0.39 TCGA-98-A53A-01 2 27850445 27850445 T C CCDC121 Silent p.E236E 0.33 TCGA-98-A53A-01 2 29295209 29295209 T A C2orf71 Missense_Mutation p.Q640L 0.29 deleterious(0.01) benign(0.179) TCGA-98-A53A-01 2 50758375 50758375 C A NRXN1 Silent p.T819T 0.31 TCGA-98-A53A-01 2 51255042 51255042 G A NRXN1 Missense_Mutation p.R124C 0.23 deleterious(0.03) possibly_damaging(0.858) TCGA-98-A53A-01 2 61417461 61417462 TG - USP34 Frame_Shift_Del p.Q3273Vfs*2 0.25 TCGA-98-A53A-01 2 67630004 67630006 CAA - ETAA1 In_Frame_Del p.T149del 0.29 TCGA-98-A53A-01 2 69870025 69870025 C T AAK1 Missense_Mutation p.E50K 0.39 deleterious(0.02) unknown(0) TCGA-98-A53A-01 2 74757197 74757197 G A HTRA2 Missense_Mutation p.G22S 0.38 tolerated_low_confidence(0.07) probably_damaging(0.999) TCGA-98-A53A-01 2 86697462 86697462 A T KDM3A Missense_Mutation p.D552V 0.29 tolerated(1) probably_damaging(0.999) TCGA-98-A53A-01 2 89246824 89246824 A G IGKV1-5 Missense_Mutation p.Y116H 0.41 deleterious(0.01) benign(0.03) TCGA-98-A53A-01 2 95847113 95847116 GAAG AAA ZNF2 Frame_Shift_Del p.T182Pfs*40 0.16 TCGA-98-A53A-01 2 99413916 99413916 C G KIAA1211L Missense_Mutation p.R834P 0.33 deleterious(0) probably_damaging(0.983) TCGA-98-A53A-01 3 107096824 107096824 A G CCDC54 Silent p.K130K 0.42 TCGA-98-A53A-01 3 109023428 109023428 C A DPPA2 Missense_Mutation p.V250L 0.62 deleterious(0.01) benign(0.125) TCGA-98-A53A-01 3 11350457 11350457 G A ATG7 Splice_Site p.X112_splice 0.53 TCGA-98-A53A-01 3 119120863 119120863 G T ARHGAP31 Missense_Mutation p.G422C 0.18 deleterious(0.01) benign(0.093) TCGA-98-A53A-01 3 121251939 121251939 G T POLQ Missense_Mutation p.D286E 0.20 deleterious(0.01) benign(0.13) TCGA-98-A53A-01 3 123471345 123471345 T C MYLK Missense_Mutation p.N69S 0.18 deleterious(0.02) benign(0.156) TCGA-98-A53A-01 3 130187668 130187668 C G COL6A5 Missense_Mutation p.P2274A 0.23 deleterious(0.02) benign(0.114) TCGA-98-A53A-01 3 133692571 133692571 A T SLCO2A1 Silent p.G111G 0.24 TCGA-98-A53A-01 3 134084711 134084711 T A AMOTL2 Silent p.T409T 0.21 TCGA-98-A53A-01 3 137958309 137958309 G T ARMC8 Splice_Site p.X245_splice 0.18 TCGA-98-A53A-01 3 150176363 150176363 G T TSC22D2 Silent p.V761V 0.17 TCGA-98-A53A-01 3 150931586 150931586 T C P2RY14 Missense_Mutation p.I173M 0.18 tolerated(0.27) benign(0.009) TCGA-98-A53A-01 3 160037620 160037620 A G IFT80 Silent p.F295F 0.18 TCGA-98-A53A-01 3 160141388 160141388 A T SMC4 Missense_Mutation p.D732V 0.18 deleterious(0.02) benign(0.043) TCGA-98-A53A-01 3 171453372 171453372 T C PLD1 Missense_Mutation p.Q115R 0.22 tolerated(0.54) possibly_damaging(0.723) TCGA-98-A53A-01 3 176769389 176769389 A C TBL1XR1 Silent p.A110A 0.21 TCGA-98-A53A-01 3 183911336 183911336 G A ABCF3 Silent p.V660V 0.14 TCGA-98-A53A-01 3 186335028 186335028 G C AHSG Silent p.P154P 0.60 TCGA-98-A53A-01 3 187416371 187416371 G C RTP2 Missense_Mutation p.S198C 0.34 deleterious(0) probably_damaging(0.954) TCGA-98-A53A-01 3 189689701 189689701 C T LEPREL1 Missense_Mutation p.A599T 0.40 deleterious(0.05) probably_damaging(0.98) TCGA-98-A53A-01 3 27759045 27759045 G T EOMES Missense_Mutation p.P526H 0.50 deleterious(0) possibly_damaging(0.758) TCGA-98-A53A-01 3 36872516 36872516 T A TRANK1 Missense_Mutation p.K2809M 0.48 tolerated(0.05) possibly_damaging(0.717) TCGA-98-A53A-01 3 39170747 39170747 C G TTC21A Missense_Mutation p.A701G 0.39 deleterious(0.03) benign(0.163) TCGA-98-A53A-01 3 39170774 39170774 A T TTC21A Missense_Mutation p.D710V 0.43 deleterious(0) probably_damaging(1) TCGA-98-A53A-01 3 39230087 39230087 C A XIRP1 Missense_Mutation p.D284Y 0.44 deleterious(0) probably_damaging(0.999) TCGA-98-A53A-01 3 39431996 39431996 C T SLC25A38 Missense_Mutation p.P92S 0.35 deleterious(0) probably_damaging(0.992) TCGA-98-A53A-01 3 8609291 8609291 G A LMCD1 3'UTR 0.53 TCGA-98-A53A-01 3 86115968 86115968 C G CADM2 3'Flank 0.29 TCGA-98-A53A-01 4 110384718 110384718 A T SEC24B Silent p.P265P 0.44 TCGA-98-A53A-01 4 110763629 110763629 C T RRH Missense_Mutation p.S242F 0.20 deleterious(0.01) possibly_damaging(0.869) TCGA-98-A53A-01 4 110790825 110790825 G T LRIT3 Missense_Mutation p.G307V 0.36 deleterious(0) probably_damaging(0.997) TCGA-98-A53A-01 4 126242108 126242108 C A FAT4 Missense_Mutation p.N1514K 0.15 probably_damaging(0.944) TCGA-98-A53A-01 4 134073151 134073151 G T PCDH10 Missense_Mutation p.S619I 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-98-A53A-01 4 147795865 147795865 C A TTC29 Intron 0.38 TCGA-98-A53A-01 4 155155868 155155868 G T DCHS2 Silent p.P2857P 0.39 TCGA-98-A53A-01 4 155191052 155191052 C A DCHS2 Nonsense_Mutation p.G1738* 0.14 TCGA-98-A53A-01 4 164394516 164394516 C A TKTL2 Missense_Mutation p.G124V 0.26 deleterious(0) probably_damaging(0.995) TCGA-98-A53A-01 4 164394517 164394517 C A TKTL2 Missense_Mutation p.G124W 0.26 deleterious(0) probably_damaging(1) TCGA-98-A53A-01 4 177136670 177136670 G C ASB5 3'UTR 0.20 TCGA-98-A53A-01 4 189020220 189020221 TT - TRIML2 Frame_Shift_Del p.K147Vfs*25 0.29 TCGA-98-A53A-01 4 189022349 189022349 C A TRIML2 Missense_Mutation p.R64L 0.19 tolerated(0.18) benign(0.013) TCGA-98-A53A-01 4 189068552 189068552 G T TRIML1 3'UTR 0.35 TCGA-98-A53A-01 4 37592748 37592748 C A C4orf19 3'UTR 0.19 TCGA-98-A53A-01 4 41748110 41748110 G T PHOX2B Missense_Mutation p.P220Q 0.32 tolerated_low_confidence(0.08) unknown(0) TCGA-98-A53A-01 4 436722 436722 T C ZNF721 Missense_Mutation p.S512G 0.41 tolerated(0.34) benign(0.14) TCGA-98-A53A-01 4 47887897 47887897 T C NFXL1 Missense_Mutation p.S555G 0.21 tolerated(0.16) benign(0.194) TCGA-98-A53A-01 4 48550731 48550731 G C FRYL Missense_Mutation p.L1622V 0.53 deleterious(0.02) probably_damaging(0.998) TCGA-98-A53A-01 4 49063935 49063935 G T CWH43 3'UTR 0.57 TCGA-98-A53A-01 4 57845114 57845114 G C POLR2B 5'UTR 0.30 TCGA-98-A53A-01 4 66189723 66189723 G C EPHA5 3'UTR 0.26 TCGA-98-A53A-01 4 71099840 71099840 G T FDCSP Missense_Mutation p.R65I 0.36 tolerated_low_confidence(0.11) benign(0) TCGA-98-A53A-01 4 71232668 71232668 T A SMR3A Missense_Mutation p.V121E 0.31 deleterious_low_confidence(0) unknown(0) TCGA-98-A53A-01 4 73169730 73169730 G C ADAMTS3 Silent p.T776T 0.32 TCGA-98-A53A-01 4 85687181 85687181 C G WDFY3 Splice_Site p.X1657_splice 0.36 TCGA-98-A53A-01 4 88766707 88766707 C A MEPE Silent p.V229V 0.31 TCGA-98-A53A-01 4 99300284 99300284 G T RAP1GDS1 Missense_Mutation p.G161C 0.26 deleterious(0.04) probably_damaging(1) TCGA-98-A53A-01 5 10402168 10402168 C G MARCH6 Intron 0.24 TCGA-98-A53A-01 5 1076341 1076341 T G SLC12A7 Missense_Mutation p.M587L 0.25 deleterious(0.05) possibly_damaging(0.893) TCGA-98-A53A-01 5 139941357 139941357 C G APBB3 Intron 0.53 TCGA-98-A53A-01 5 140595007 140595007 A T PCDHB13 Missense_Mutation p.T438S 0.49 deleterious_low_confidence(0.02) benign(0.04) TCGA-98-A53A-01 5 140866970 140866970 C - PCDHGC4 Frame_Shift_Del p.P745Lfs*10 0.31 TCGA-98-A53A-01 5 14687645 14687645 A G FAM105B Missense_Mutation p.I162V 0.35 tolerated(0.18) benign(0.005) TCGA-98-A53A-01 5 161576130 161576130 G A GABRG2 Silent p.L353L 0.45 TCGA-98-A53A-01 5 169688140 169688140 G A LCP2 Missense_Mutation p.H310Y 0.23 tolerated(0.61) possibly_damaging(0.609) TCGA-98-A53A-01 5 180432718 180432718 G A BTNL3 Missense_Mutation p.G416E 0.41 deleterious(0.03) probably_damaging(0.993) TCGA-98-A53A-01 5 23526623 23526623 T C PRDM9 Missense_Mutation p.F476L 0.39 tolerated(0.27) benign(0.007) TCGA-98-A53A-01 5 33891868 33891868 G T ADAMTS12 Missense_Mutation p.P32T 0.22 tolerated(0.06) benign(0.013) TCGA-98-A53A-01 5 40681717 40681717 G A PTGER4 Missense_Mutation p.G208S 0.31 tolerated(0.45) benign(0.156) TCGA-98-A53A-01 5 40692171 40692171 G A PTGER4 Silent p.K386K 0.33 TCGA-98-A53A-01 5 40976891 40976891 G A C7 Nonsense_Mutation p.W705* 0.24 TCGA-98-A53A-01 5 43509292 43509292 T G C5orf34 Silent p.P50P 0.24 TCGA-98-A53A-01 5 476401 476401 C T SLC9A3 Silent p.L661L 0.25 TCGA-98-A53A-01 5 7820790 7820790 G T ADCY2 Silent p.L1037L 0.31 TCGA-98-A53A-01 5 80021291 80021291 C T MSH3 Nonsense_Mutation p.R454* 0.45 TCGA-98-A53A-01 6 10586696 10586697 TG - GCNT2 Intron 0.22 TCGA-98-A53A-01 6 109769991 109770005 GGAGGAAGACAAATC - MICAL1 In_Frame_Del p.D532_S536del 0.40 TCGA-98-A53A-01 6 116837218 116837218 C T FAM26E 3'UTR 0.35 TCGA-98-A53A-01 6 130166936 130166936 A T TMEM244 Missense_Mutation p.L32Q 0.39 tolerated(0.06) probably_damaging(0.943) TCGA-98-A53A-01 6 131996432 131996432 A G ENPP3 Intron 0.38 TCGA-98-A53A-01 6 134350561 134350561 T A SLC2A12 Silent p.I134I 0.49 TCGA-98-A53A-01 6 136665300 136665300 G A MAP7 3'UTR 0.55 TCGA-98-A53A-01 6 139262521 139262521 T G REPS1 Missense_Mutation p.K362N 0.49 tolerated(0.07) probably_damaging(0.999) TCGA-98-A53A-01 6 146350808 146350808 C A GRM1 Nonsense_Mutation p.S52* 0.32 TCGA-98-A53A-01 6 152720936 152720936 C A SYNE1 Missense_Mutation p.S2351I 0.28 benign(0.004) TCGA-98-A53A-01 6 170597490 170597490 C T DLL1 Silent p.T169T 0.33 TCGA-98-A53A-01 6 24302209 24302209 G T DCDC2 Missense_Mutation p.P138T 0.29 deleterious(0) probably_damaging(1) TCGA-98-A53A-01 6 24528381 24528381 G T ALDH5A1 Missense_Mutation p.A457S 0.37 deleterious(0.01) probably_damaging(0.929) TCGA-98-A53A-01 6 28971902 28971902 C A ZNF311 5'UTR 0.19 TCGA-98-A53A-01 6 29455512 29455512 C G MAS1L Silent p.T56T 0.42 TCGA-98-A53A-01 6 33136760 33136760 G T COL11A2 Missense_Mutation p.P1189H 0.28 unknown(0) TCGA-98-A53A-01 6 33171393 33171393 G T SLC39A7 Missense_Mutation p.A405S 0.32 tolerated(0.64) benign(0.017) TCGA-98-A53A-01 6 33359755 33359755 A C KIFC1 5'UTR 0.26 TCGA-98-A53A-01 6 36339222 36339222 G T ETV7 Silent p.T183T 0.35 TCGA-98-A53A-01 6 40400367 40400367 A T LRFN2 Missense_Mutation p.H162Q 0.29 tolerated(0.39) benign(0) TCGA-98-A53A-01 6 42224724 42224725 - TG TRERF1 Frame_Shift_Ins p.E818Afs*14 0.27 TCGA-98-A53A-01 6 51908518 51908518 C G PKHD1 Missense_Mutation p.R909P 0.22 tolerated(0.19) possibly_damaging(0.669) TCGA-98-A53A-01 6 76618294 76618294 A G MYO6 Missense_Mutation p.K1121R 0.36 tolerated(0.11) possibly_damaging(0.743) TCGA-98-A53A-01 6 99848332 99848333 AG - PNISR 3'UTR 0.38 TCGA-98-A53A-01 7 100486709 100486709 T G UFSP1 Missense_Mutation p.M62L 0.31 deleterious(0) probably_damaging(0.986) TCGA-98-A53A-01 7 100807722 100807722 C T VGF Missense_Mutation p.A135T 0.36 deleterious_low_confidence(0.02) possibly_damaging(0.748) TCGA-98-A53A-01 7 100854966 100854966 C A PLOD3 Missense_Mutation p.G422C 0.30 deleterious(0.01) possibly_damaging(0.886) TCGA-98-A53A-01 7 103151415 103151415 T A RELN Silent p.V2719V 0.34 TCGA-98-A53A-01 7 106509347 106509347 A G PIK3CG Silent p.A447A 0.32 TCGA-98-A53A-01 7 112724054 112724054 G T GPR85 Silent p.A241A 0.49 TCGA-98-A53A-01 7 114284870 114284870 G T FOXP2 Intron 0.72 TCGA-98-A53A-01 7 140048516 140048518 AGA - SLC37A3 In_Frame_Del p.F311del 0.45 TCGA-98-A53A-01 7 142457357 142457357 A T PRSS1 Missense_Mutation p.T8S 0.36 tolerated(0.3) benign(0.027) TCGA-98-A53A-01 7 148512613 148512616 TCTT - EZH2 Frame_Shift_Del p.K510Yfs*3 0.49 TCGA-98-A53A-01 7 150501482 150501482 G A TMEM176A Silent p.L196L 0.46 TCGA-98-A53A-01 7 19184735 19184735 C G FERD3L Missense_Mutation p.R84T 0.10 tolerated(0.18) possibly_damaging(0.448) TCGA-98-A53A-01 7 20824864 20824864 T A SP8 Missense_Mutation p.Q191L 0.23 tolerated(0.25) benign(0.393) TCGA-98-A53A-01 7 33303983 33303983 A G BBS9 Silent p.L233L 0.36 TCGA-98-A53A-01 7 42005708 42005708 C A GLI3 Missense_Mutation p.G988V 0.55 tolerated(0.05) possibly_damaging(0.581) TCGA-98-A53A-01 7 4900518 4900518 A G PAPOLB Silent p.S307S 0.31 TCGA-98-A53A-01 7 53103529 53103529 G C POM121L12 Silent p.L55L 0.49 TCGA-98-A53A-01 7 5372665 5372665 T C TNRC18 Missense_Mutation p.Y1912C 0.33 probably_damaging(0.922) TCGA-98-A53A-01 7 57188383 57188383 C A ZNF479 Missense_Mutation p.G247C 0.27 deleterious(0) probably_damaging(0.979) TCGA-98-A53A-01 7 57188391 57188391 T C ZNF479 Missense_Mutation p.E244G 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-98-A53A-01 7 64864086 64864086 C T ZNF92 Silent p.F353F 0.06 TCGA-98-A53A-01 7 75692850 75692850 A T MDH2 Silent p.R191R 0.27 TCGA-98-A53A-01 7 76619600 76619600 G T UPK3B Intron 0.32 TCGA-98-A53A-01 7 8791183 8791183 G - NXPH1 Frame_Shift_Del p.V201Lfs*37 0.28 TCGA-98-A53A-01 7 94259128 94259128 G A SGCE Silent p.H45H 0.38 TCGA-98-A53A-01 7 99096395 99096395 C A ZNF394 Missense_Mutation p.R176L 0.41 deleterious(0.03) benign(0.019) TCGA-98-A53A-01 7 99688699 99688700 CA - COPS6 Frame_Shift_Del p.T192Rfs*27 0.26 TCGA-98-A53A-01 8 10383204 10383204 G C PRSS55 Missense_Mutation p.G37R 0.61 tolerated(0.32) benign(0.216) TCGA-98-A53A-01 8 10383205 10383205 G T PRSS55 Missense_Mutation p.G37V 0.59 tolerated(0.17) benign(0.04) TCGA-98-A53A-01 8 107781904 107781904 T C ABRA Missense_Mutation p.K172R 0.27 tolerated(0.28) benign(0.013) TCGA-98-A53A-01 8 123964739 123964739 G T ZHX2 Missense_Mutation p.R330L 0.22 deleterious(0) probably_damaging(0.998) TCGA-98-A53A-01 8 133146624 133146624 A G KCNQ3 Missense_Mutation p.I571T 0.17 deleterious(0) possibly_damaging(0.859) TCGA-98-A53A-01 8 133673837 133673837 T A LRRC6 Missense_Mutation p.N16I 0.40 deleterious(0) probably_damaging(0.998) TCGA-98-A53A-01 8 139180257 139180257 C T FAM135B Missense_Mutation p.R380Q 0.29 deleterious(0) probably_damaging(0.996) TCGA-98-A53A-01 8 139180284 139180284 G A FAM135B Missense_Mutation p.T371M 0.36 deleterious(0.03) benign(0.019) TCGA-98-A53A-01 8 144945491 144945493 AGA - EPPK1 In_Frame_Del p.L644del 0.56 TCGA-98-A53A-01 8 144998466 144998466 C T PLEC Silent p.R2014R 0.41 TCGA-98-A53A-01 8 42256240 42256240 C T VDAC3 Missense_Mutation p.T44I 0.36 deleterious(0.03) possibly_damaging(0.678) TCGA-98-A53A-01 8 62577660 62577660 C T ASPH Intron 0.57 TCGA-98-A53A-01 8 67047278 67047278 T G TRIM55 Missense_Mutation p.I132S 0.50 deleterious(0) probably_damaging(1) TCGA-98-A53A-01 8 72211870 72211870 T A EYA1 Intron 0.30 TCGA-98-A53A-01 8 76471079 76471079 G A HNF4G Silent p.R300R 0.28 TCGA-98-A53A-01 8 80942439 80942439 A C MRPS28 Missense_Mutation p.H15Q 0.21 tolerated_low_confidence(0.27) benign(0.003) TCGA-98-A53A-01 8 96275913 96275913 A G C8orf37 Splice_Site p.X81_splice 0.22 TCGA-98-A53A-01 9 126783580 126783580 C G LHX2 Silent p.L310L 0.48 TCGA-98-A53A-01 9 138656917 138656917 C T KCNT1 Missense_Mutation p.S359L 0.61 tolerated(0.37) benign(0.008) TCGA-98-A53A-01 9 139911502 139911502 G T ABCA2 Silent p.I876I 0.22 TCGA-98-A53A-01 9 16436689 16436690 - ATAG BNC2 Frame_Shift_Ins p.M501Ifs*6 0.58 TCGA-98-A53A-01 9 178850 178850 G A CBWD1 Silent p.A40A 0.47 TCGA-98-A53A-01 9 33473838 33473838 C A NOL6 Translation_Start_Site p.M1? 0.39 deleterious_low_confidence(0.02) possibly_damaging(0.575) TCGA-98-A53A-01 X 101572306 101572306 G T NXF2 Intron 0.32 TCGA-98-A53A-01 X 114251809 114251809 G T IL13RA2 Silent p.I8I 0.67 TCGA-98-A53A-01 X 134856775 134856775 A C CT45A1 Missense_Mutation p.K184Q 0.08 deleterious(0.03) benign(0.425) TCGA-98-A53A-01 X 135429007 135429007 C A GPR112 Missense_Mutation p.L1048I 0.68 tolerated(0.15) benign(0.1) TCGA-98-A53A-01 X 144909230 144909230 A T TMEM257 Missense_Mutation p.Y12F 0.56 tolerated_low_confidence(0.41) benign(0.294) TCGA-98-A53A-01 X 31090118 31090118 T A FTHL17 5'UTR 0.74 TCGA-98-A53A-01 X 31497171 31497171 A G DMD Missense_Mutation p.L2866P 0.72 possibly_damaging(0.883) TCGA-98-A53A-01 X 34150288 34150288 C A FAM47A Missense_Mutation p.R36S 0.14 tolerated(0.08) benign(0.351) TCGA-98-A53A-01 X 35984814 35984814 G C CXorf22 Missense_Mutation p.A515P 0.30 tolerated(0.21) benign(0.002) TCGA-98-A53A-01 X 39922156 39922158 TCT - BCOR In_Frame_Del p.E1339del 0.81 TCGA-98-A53A-01 X 48462733 48462733 A G WDR13 Missense_Mutation p.S410G 0.68 deleterious(0.01) probably_damaging(0.999) TCGA-98-A53A-01 X 51150063 51150063 C T CXorf67 Silent p.A65A 0.76 TCGA-98-A53A-01 X 51150064 51150064 G T CXorf67 Missense_Mutation p.G66C 0.76 deleterious(0.01) probably_damaging(1) TCGA-98-A53A-01 X 5821153 5821153 C T NLGN4X Silent p.V522V 0.66 TCGA-98-A53A-01 X 86773080 86773080 C A KLHL4 Missense_Mutation p.L62M 0.71 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-98-A53A-01 Y 4967800 4967800 C T PCDH11Y Silent p.V727V 0.38 TCGA-98-A53A-01 Y 4968580 4968580 C T PCDH11Y Silent p.P987P 0.35 TCGA-98-A53B-01 10 113919768 113919769 - C GPAM Frame_Shift_Ins p.P602Sfs*3 0.21 TCGA-98-A53B-01 10 117075132 117075132 G A ATRNL1 Missense_Mutation p.G975S 0.21 deleterious(0) probably_damaging(1) TCGA-98-A53B-01 10 117884877 117884877 A T GFRA1 Missense_Mutation p.Y209N 0.20 deleterious(0) possibly_damaging(0.856) TCGA-98-A53B-01 10 123976327 123976327 C T TACC2 Silent p.F2510F 0.13 TCGA-98-A53B-01 10 16955916 16955916 C A CUBN Missense_Mutation p.R2476L 0.26 deleterious(0.01) benign(0) TCGA-98-A53B-01 10 26455029 26455030 - C MYO3A Frame_Shift_Ins p.R1013Pfs*5 0.18 TCGA-98-A53B-01 10 48414026 48414026 T C GDF2 Missense_Mutation p.E281G 0.23 tolerated(0.12) benign(0.309) TCGA-98-A53B-01 10 68686284 68686284 C T LRRTM3 5'UTR 0.24 TCGA-98-A53B-01 10 7658016 7658016 G T ITIH5 Missense_Mutation p.P290T 0.13 deleterious(0) probably_damaging(1) TCGA-98-A53B-01 10 99150500 99150500 C T RRP12 Missense_Mutation p.R211Q 0.20 deleterious(0.01) benign(0.125) TCGA-98-A53B-01 11 30926643 30926643 C - DCDC1 Frame_Shift_Del p.M1392* 0.14 TCGA-98-A53B-01 11 33564647 33564647 A G KIAA1549L Missense_Mutation p.N216S 0.18 tolerated_low_confidence(0.3) benign(0.002) TCGA-98-A53B-01 11 4389229 4389229 G T OR52B4 Nonsense_Mutation p.C99* 0.26 TCGA-98-A53B-01 11 55761963 55761963 G C OR5F1 Missense_Mutation p.L47V 0.17 tolerated(0.45) benign(0.008) TCGA-98-A53B-01 11 61249305 61249305 G A PPP1R32 Silent p.G8G 0.12 TCGA-98-A53B-01 11 65265304 65265305 - C MALAT1 RNA 0.17 TCGA-98-A53B-01 11 92918911 92918911 T C SLC36A4 Missense_Mutation p.Q42R 0.27 tolerated(0.29) benign(0.021) TCGA-98-A53B-01 11 93118583 93118583 C A CCDC67 Nonsense_Mutation p.S270* 0.31 TCGA-98-A53B-01 12 100731224 100731224 G T SCYL2 Missense_Mutation p.K695N 0.29 deleterious(0.01) probably_damaging(0.962) TCGA-98-A53B-01 12 111296477 111296477 T C CCDC63 Silent p.S89S 0.18 TCGA-98-A53B-01 12 113537755 113537755 G A RASAL1 Silent p.A800A 0.14 TCGA-98-A53B-01 12 120588995 120588995 T G GCN1L1 Silent p.A1421A 0.23 TCGA-98-A53B-01 12 129285474 129285474 C A SLC15A4 Missense_Mutation p.A447S 0.25 deleterious(0) possibly_damaging(0.627) TCGA-98-A53B-01 12 129822268 129822268 C A TMEM132D Nonsense_Mutation p.E404* 0.26 TCGA-98-A53B-01 12 133502031 133502031 T A ZNF605 Silent p.G649G 0.20 TCGA-98-A53B-01 12 13715808 13715808 C G GRIN2B Missense_Mutation p.C1455S 0.25 tolerated(0.66) benign(0.171) TCGA-98-A53B-01 12 39760225 39760225 C G KIF21A Missense_Mutation p.G277A 0.15 deleterious(0) probably_damaging(1) TCGA-98-A53B-01 12 416774 416774 C G KDM5A Missense_Mutation p.R1259T 0.17 deleterious(0) possibly_damaging(0.647) TCGA-98-A53B-01 12 48723135 48723135 G A H1FNT Missense_Mutation p.A21T 0.25 deleterious(0.05) possibly_damaging(0.908) TCGA-98-A53B-01 12 49434595 49434595 C A KMT2D Nonsense_Mutation p.E2320* 0.22 TCGA-98-A53B-01 12 49434596 49434596 C G KMT2D Silent p.L2319L 0.22 TCGA-98-A53B-01 12 70209246 70209246 C T RAB3IP 3'UTR 0.22 TCGA-98-A53B-01 12 7818463 7818463 A G APOBEC1 Silent p.T2T 0.23 TCGA-98-A53B-01 12 80749546 80749546 C T OTOGL Missense_Mutation p.T1866I 0.21 deleterious(0.01) benign(0.002) TCGA-98-A53B-01 12 8083184 8083184 C A SLC2A3 Missense_Mutation p.G189C 0.19 deleterious(0.04) probably_damaging(0.972) TCGA-98-A53B-01 13 60453369 60453369 G C DIAPH3 Silent p.L867L 0.23 TCGA-98-A53B-01 14 102516986 102516986 G T DYNC1H1 3'UTR 0.38 TCGA-98-A53B-01 14 19559053 19559053 T A POTEG Missense_Mutation p.N233K 0.13 deleterious(0) benign(0.231) TCGA-98-A53B-01 14 21837381 21837381 A G SUPT16H Missense_Mutation p.L255P 0.16 deleterious(0) probably_damaging(0.999) TCGA-98-A53B-01 14 22580928 22580928 T A TRAV25 Missense_Mutation p.S91T 0.22 deleterious(0.03) probably_damaging(0.969) TCGA-98-A53B-01 14 45599943 45599943 C G FKBP3 Missense_Mutation p.D57H 0.21 deleterious(0.01) possibly_damaging(0.479) TCGA-98-A53B-01 14 60070606 60070606 C T RTN1 Missense_Mutation p.G716S 0.14 deleterious(0.01) probably_damaging(0.994) TCGA-98-A53B-01 14 64469912 64469912 G T SYNE2 Nonsense_Mutation p.E1421* 0.19 TCGA-98-A53B-01 14 96730549 96730549 C T BDKRB1 Missense_Mutation p.S177F 0.19 deleterious(0) probably_damaging(0.933) TCGA-98-A53B-01 15 25940025 25940025 T C ATP10A Missense_Mutation p.Q1010R 0.15 deleterious(0) probably_damaging(0.951) TCGA-98-A53B-01 15 33023137 33023137 T A GREM1 Missense_Mutation p.H82Q 0.22 tolerated(0.1) benign(0.27) TCGA-98-A53B-01 15 57976804 57976804 C T GCOM1 Intron 0.10 TCGA-98-A53B-01 15 78841227 78841227 G A PSMA4 Missense_Mutation p.E243K 0.09 tolerated(0.44) unknown(0) TCGA-98-A53B-01 16 1033774 1033774 C A SOX8 Missense_Mutation p.R157S 0.24 deleterious(0) probably_damaging(1) TCGA-98-A53B-01 16 10527427 10527427 T - ATF7IP2 Frame_Shift_Del p.K295Nfs*3 0.15 TCGA-98-A53B-01 16 1257082 1257082 C T CACNA1H Silent p.F957F 0.33 TCGA-98-A53B-01 16 1570261 1570261 G C IFT140 Missense_Mutation p.I1248M 0.10 deleterious(0) probably_damaging(0.91) TCGA-98-A53B-01 16 20387434 20387434 C T PDILT Missense_Mutation p.E167K 0.14 tolerated(0.63) benign(0.01) TCGA-98-A53B-01 16 3367868 3367868 G A ZNF75A Silent p.%3D 0.15 TCGA-98-A53B-01 16 4909066 4909066 G T UBN1 Missense_Mutation p.G158V 0.20 deleterious(0) probably_damaging(1) TCGA-98-A53B-01 16 4920845 4920845 G A UBN1 Silent p.K477K 0.19 TCGA-98-A53B-01 16 70076276 70076276 T A PDXDC2P RNA 0.32 TCGA-98-A53B-01 16 82033705 82033705 C G SDR42E1 Missense_Mutation p.E65Q 0.11 tolerated(0.27) possibly_damaging(0.457) TCGA-98-A53B-01 16 84270844 84270844 C A KCNG4 Missense_Mutation p.S83I 0.22 deleterious(0) possibly_damaging(0.813) TCGA-98-A53B-01 16 88744900 88744900 G T SNAI3 Missense_Mutation p.L279I 0.26 deleterious(0) possibly_damaging(0.874) TCGA-98-A53B-01 17 17127347 17127347 C T FLCN Nonsense_Mutation p.W169* 0.44 TCGA-98-A53B-01 17 31087391 31087391 C T MYO1D Missense_Mutation p.E405K 0.13 deleterious(0.01) possibly_damaging(0.739) TCGA-98-A53B-01 17 3474842 3474842 T G SHPK Missense_Mutation p.S775R 0.56 tolerated(0.1) probably_damaging(0.987) TCGA-98-A53B-01 17 42458309 42458309 G T ITGA2B Missense_Mutation p.T444K 0.14 tolerated(0.54) benign(0.001) TCGA-98-A53B-01 17 48768476 48768477 - A ABCC3 Frame_Shift_Ins p.V1501Sfs*3 0.17 TCGA-98-A53B-01 17 57771412 57771412 A G CLTC 3'UTR 0.17 TCGA-98-A53B-01 17 6913665 6913665 A G ALOX12 Missense_Mutation p.T639A 0.13 tolerated(0.66) benign(0.009) TCGA-98-A53B-01 17 71282390 71282390 G A CDC42EP4 Missense_Mutation p.R84W 0.18 deleterious(0.01) benign(0.104) TCGA-98-A53B-01 17 74015086 74015086 C T EVPL Missense_Mutation p.R398Q 0.33 tolerated(0.29) benign(0.004) TCGA-98-A53B-01 17 7578176 7578176 C T TP53 Splice_Site p.X224_splice 0.24 TCGA-98-A53B-01 17 77983990 77983990 G A TBC1D16 Missense_Mutation p.R250C 0.19 tolerated(0.19) benign(0.302) TCGA-98-A53B-01 17 9801244 9801244 G A RCVRN 3'UTR 0.36 TCGA-98-A53B-01 18 24441150 24441150 G C AQP4 Missense_Mutation p.T186S 0.14 tolerated(0.56) benign(0.005) TCGA-98-A53B-01 19 20975334 20975334 G A ZNF66 Missense_Mutation p.R7K 0.27 tolerated(0.11) benign(0.088) TCGA-98-A53B-01 19 22780163 22780163 C G RN7SL860P 5'Flank 0.35 TCGA-98-A53B-01 19 31768871 31768871 T C TSHZ3 Missense_Mutation p.M610V 0.29 deleterious(0.02) probably_damaging(0.958) TCGA-98-A53B-01 19 37905159 37905159 T G ZNF569 Missense_Mutation p.H134P 0.26 tolerated(0.14) benign(0.394) TCGA-98-A53B-01 19 38673377 38673377 A G SIPA1L3 Missense_Mutation p.K1476R 0.51 tolerated(1) benign(0.147) TCGA-98-A53B-01 19 40408701 40408701 C T FCGBP Missense_Mutation p.G1380R 0.51 probably_damaging(0.999) TCGA-98-A53B-01 19 43690621 43690621 A T PSG5 5'UTR 0.47 TCGA-98-A53B-01 19 43766103 43766103 A G PSG9 Silent p.G206G 0.10 TCGA-98-A53B-01 19 47575243 47575243 T A ZC3H4 Silent p.A646A 0.33 TCGA-98-A53B-01 19 47575245 47575245 C G ZC3H4 Missense_Mutation p.A646P 0.31 unknown(0) TCGA-98-A53B-01 19 49230044 49230044 T A RASIP1 Nonsense_Mutation p.K709* 0.20 TCGA-98-A53B-01 19 58371591 58371591 G C ZNF587 3'UTR 0.11 TCGA-98-A53B-01 1 103444650 103444650 C A COL11A1 Missense_Mutation p.G874V 0.17 unknown(0) TCGA-98-A53B-01 1 113240940 113240940 G A MOV10 Missense_Mutation p.G783D 0.08 deleterious(0) probably_damaging(0.999) TCGA-98-A53B-01 1 1289861 1289861 G A MXRA8 Silent p.V326V 0.21 TCGA-98-A53B-01 1 154127399 154127399 A T NUP210L Missense_Mutation p.V41E 0.16 deleterious(0) possibly_damaging(0.901) TCGA-98-A53B-01 1 160313176 160313176 A G NCSTN 5'UTR 0.21 TCGA-98-A53B-01 1 167343355 167343355 C T POU2F1 Missense_Mutation p.T138M 0.14 tolerated(0.14) unknown(0) TCGA-98-A53B-01 1 175331848 175331848 G T TNR Missense_Mutation p.S935R 0.23 deleterious(0) probably_damaging(0.947) TCGA-98-A53B-01 1 193046081 193046081 A G TROVE2 Silent p.E329E 0.12 TCGA-98-A53B-01 1 200549445 200549445 G C KIF14 Missense_Mutation p.I1134M 0.11 deleterious(0.03) benign(0.399) TCGA-98-A53B-01 1 201915547 201915547 G A LMOD1 5'UTR 0.17 TCGA-98-A53B-01 1 228511235 228511235 A T OBSCN Missense_Mutation p.M6151L 0.18 possibly_damaging(0.472) TCGA-98-A53B-01 1 235345989 235345989 T C ARID4B Missense_Mutation p.I749V 0.28 tolerated_low_confidence(0.33) benign(0.005) TCGA-98-A53B-01 1 237870341 237870341 G T RYR2 Missense_Mutation p.G3225C 0.25 probably_damaging(0.993) TCGA-98-A53B-01 1 247654720 247654720 T C OR2W5 RNA 0.27 TCGA-98-A53B-01 1 248525107 248525107 T C OR2T4 Silent p.A75A 0.18 TCGA-98-A53B-01 1 33745876 33745876 C T ZNF362 Silent p.I167I 0.45 TCGA-98-A53B-01 1 38280855 38280855 G T MTF1 Missense_Mutation p.L739M 0.42 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-98-A53B-01 20 3687184 3687184 C T SIGLEC1 Silent p.S73S 0.23 TCGA-98-A53B-01 20 42204996 42204996 C T SGK2 Missense_Mutation p.R336W 0.06 deleterious(0) probably_damaging(1) TCGA-98-A53B-01 21 41496241 41496241 C A DSCAM Missense_Mutation p.A1193S 0.18 deleterious(0.05) benign(0.312) TCGA-98-A53B-01 21 45674582 45674582 G T DNMT3L Missense_Mutation p.T204K 0.20 tolerated(1) benign(0.003) TCGA-98-A53B-01 21 46066473 46066474 CC - KRTAP10-11 Frame_Shift_Del p.P34Qfs*29 0.27 TCGA-98-A53B-01 22 41903853 41903853 G T ACO2 Missense_Mutation p.A78S 0.42 tolerated_low_confidence(0.71) benign(0.002) TCGA-98-A53B-01 22 50845188 50845188 G T PPP6R2 Nonsense_Mutation p.E100* 0.27 TCGA-98-A53B-01 2 119600680 119600680 T G EN1 Missense_Mutation p.Q338P 0.19 deleterious(0) possibly_damaging(0.841) TCGA-98-A53B-01 2 119600682 119600682 G T EN1 Silent p.A337A 0.17 TCGA-98-A53B-01 2 141079587 141079587 C A LRP1B Silent p.V4195V 0.16 TCGA-98-A53B-01 2 141122295 141122295 T G LRP1B Missense_Mutation p.H3689P 0.24 possibly_damaging(0.537) TCGA-98-A53B-01 2 141130611 141130611 G A LRP1B Silent p.C3578C 0.24 TCGA-98-A53B-01 2 145156598 145156598 C G ZEB2 Missense_Mutation p.S719T 0.17 tolerated(0.78) benign(0) TCGA-98-A53B-01 2 145157794 145157794 G A ZEB2 Silent p.S320S 0.20 TCGA-98-A53B-01 2 1651964 1651964 C T PXDN Silent p.E1196E 0.25 TCGA-98-A53B-01 2 179399358 179399358 G T TTN Missense_Mutation p.A33995D 0.13 TCGA-98-A53B-01 2 179596437 179596437 G T TTN Missense_Mutation p.A5722D 0.09 TCGA-98-A53B-01 2 183582861 183582861 G T DNAJC10 Missense_Mutation p.R16S 0.08 tolerated(0.24) benign(0.031) TCGA-98-A53B-01 2 190535309 190535309 G A ASNSD1 Missense_Mutation p.A597T 0.29 tolerated(0.26) benign(0.35) TCGA-98-A53B-01 2 215815802 215815802 A C ABCA12 Missense_Mutation p.F2218C 0.28 deleterious(0) benign(0.001) TCGA-98-A53B-01 2 29296309 29296309 G T C2orf71 Nonsense_Mutation p.Y273* 0.13 TCGA-98-A53B-01 2 32626664 32626664 C T BIRC6 Missense_Mutation p.S464L 0.16 probably_damaging(0.977) TCGA-98-A53B-01 2 32640234 32640234 G A BIRC6 Silent p.R625R 0.14 TCGA-98-A53B-01 2 32640357 32640357 G C BIRC6 Missense_Mutation p.Q666H 0.15 probably_damaging(0.986) TCGA-98-A53B-01 2 32641027 32641027 G C BIRC6 Missense_Mutation p.E890Q 0.09 benign(0.004) TCGA-98-A53B-01 2 38177714 38177714 A C RMDN2 5'UTR 0.40 TCGA-98-A53B-01 2 43452511 43452512 - C ZFP36L2 Frame_Shift_Ins p.G145Rfs*329 0.37 TCGA-98-A53B-01 2 65299570 65299570 C T CEP68 Missense_Mutation p.S447L 0.13 tolerated(0.36) benign(0.004) TCGA-98-A53B-01 2 80529866 80529866 A T LRRTM1 Missense_Mutation p.F360Y 0.23 tolerated(0.87) probably_damaging(0.931) TCGA-98-A53B-01 2 96593015 96593015 T C ANKRD36C 3'UTR 0.12 TCGA-98-A53B-01 2 97462782 97462782 A G CNNM4 Missense_Mutation p.N479S 0.38 deleterious(0) possibly_damaging(0.69) TCGA-98-A53B-01 2 99013327 99013327 C T CNGA3 Missense_Mutation p.T565M 0.08 deleterious(0) probably_damaging(0.999) TCGA-98-A53B-01 3 105438949 105438949 T A CBLB Missense_Mutation p.D450V 0.30 deleterious(0) possibly_damaging(0.653) TCGA-98-A53B-01 3 121417516 121417516 T A GOLGB1 Silent p.V618V 0.21 TCGA-98-A53B-01 3 141328315 141328315 G A RASA2 Missense_Mutation p.R760K 0.21 deleterious(0.04) probably_damaging(0.97) TCGA-98-A53B-01 3 154147305 154147305 T C GPR149 Missense_Mutation p.I34V 0.28 tolerated(1) benign(0.002) TCGA-98-A53B-01 3 169557803 169557804 - C LRRC31 Frame_Shift_Ins p.S543Kfs*5 0.33 TCGA-98-A53B-01 3 169664581 169664581 G A RP11-379K17.4 RNA 0.42 TCGA-98-A53B-01 3 29977601 29977601 G C RBMS3 Missense_Mutation p.D322H 0.40 deleterious(0.03) possibly_damaging(0.474) TCGA-98-A53B-01 3 52556673 52556673 C T STAB1 Missense_Mutation p.A2238V 0.38 deleterious(0.03) probably_damaging(1) TCGA-98-A53B-01 4 187209669 187209669 G T F11 Silent p.T593T 0.42 TCGA-98-A53B-01 4 39409369 39409369 A C KLB Missense_Mutation p.Y267S 0.49 tolerated(0.06) possibly_damaging(0.627) TCGA-98-A53B-01 4 42068571 42068571 A G SLC30A9 Silent p.T359T 0.50 TCGA-98-A53B-01 4 48091836 48091836 T C TXK Missense_Mutation p.M239V 0.39 tolerated(1) benign(0.008) TCGA-98-A53B-01 4 52777249 52777249 G A DCUN1D4 Missense_Mutation p.R210H 0.13 deleterious(0) probably_damaging(0.988) TCGA-98-A53B-01 4 5844850 5844850 G A CRMP1 Silent p.P334P 0.19 TCGA-98-A53B-01 4 73956621 73956621 C T ANKRD17 Missense_Mutation p.A2242T 0.14 benign(0.001) TCGA-98-A53B-01 4 74964368 74964368 G C CXCL2 Silent p.L86L 0.06 TCGA-98-A53B-01 4 78531819 78531819 G A CXCL13 Nonsense_Mutation p.W83* 0.43 TCGA-98-A53B-01 5 138723521 138723521 G A MZB1 Missense_Mutation p.A168V 0.33 tolerated(0.22) benign(0.091) TCGA-98-A53B-01 5 140723718 140723718 G C PCDHGA3 Missense_Mutation p.D40H 0.15 deleterious_low_confidence(0) benign(0.301) TCGA-98-A53B-01 5 143853311 143853311 C A KCTD16 Nonsense_Mutation p.C307* 0.48 TCGA-98-A53B-01 5 147821826 147821826 A G FBXO38 3'UTR 0.41 TCGA-98-A53B-01 5 1494998 1494998 G A LPCAT1 Missense_Mutation p.R104C 0.12 deleterious(0) probably_damaging(0.983) TCGA-98-A53B-01 5 150889644 150889644 T C FAT2 Silent p.G3999G 0.20 TCGA-98-A53B-01 5 176017259 176017259 G T CDHR2 Missense_Mutation p.R1094L 0.34 tolerated(0.09) benign(0.115) TCGA-98-A53B-01 5 35875802 35875802 T C IL7R Intron 0.33 TCGA-98-A53B-01 5 41382514 41382514 A G PLCXD3 Missense_Mutation p.W76R 0.16 deleterious(0) probably_damaging(1) TCGA-98-A53B-01 5 67589535 67589535 A G PIK3R1 Splice_Site p.X434_splice 0.33 TCGA-98-A53B-01 6 112476778 112476778 G C LAMA4 Missense_Mutation p.R650G 0.20 deleterious(0.05) possibly_damaging(0.72) TCGA-98-A53B-01 6 116580073 116580073 A T TSPYL4 5'Flank 0.39 TCGA-98-A53B-01 6 116979968 116979968 G A ZUFSP Nonsense_Mutation p.Q264* 0.50 TCGA-98-A53B-01 6 117700258 117700258 C T ROS1 Missense_Mutation p.C854Y 0.29 tolerated(0.22) benign(0.005) TCGA-98-A53B-01 6 143092574 143092574 T C HIVEP2 Missense_Mutation p.Q1101R 0.44 tolerated(0.54) benign(0.079) TCGA-98-A53B-01 6 146240606 146240606 C A SHPRH Missense_Mutation p.A1344S 0.23 tolerated(0.87) benign(0.004) TCGA-98-A53B-01 6 161491735 161491735 G T MAP3K4 Missense_Mutation p.W601C 0.41 deleterious(0.01) possibly_damaging(0.873) TCGA-98-A53B-01 6 17987322 17987322 G C KIF13A Missense_Mutation p.L37V 0.35 deleterious(0) probably_damaging(0.999) TCGA-98-A53B-01 6 26216862 26216862 G T HIST1H2BG Missense_Mutation p.P4T 0.12 tolerated_low_confidence(0.19) unknown(0) TCGA-98-A53B-01 6 56350207 56350207 A G DST Missense_Mutation p.L4414P 0.19 probably_damaging(1) TCGA-98-A53B-01 6 90605760 90605760 G T GJA10 Missense_Mutation p.D525Y 0.52 deleterious_low_confidence(0.03) benign(0.002) TCGA-98-A53B-01 7 103207164 103207164 T A RELN Missense_Mutation p.H1544L 0.44 deleterious(0.01) benign(0.074) TCGA-98-A53B-01 7 116960800 116960800 A G WNT2 Missense_Mutation p.V44A 0.18 deleterious(0) benign(0.415) TCGA-98-A53B-01 7 126882842 126882842 G T GRM8 Silent p.P139P 0.30 TCGA-98-A53B-01 7 140481402 140481402 C G BRAF Missense_Mutation p.G469A 0.10 deleterious(0.01) possibly_damaging(0.773) TCGA-98-A53B-01 7 2641099 2641099 G T IQCE Splice_Site p.X544_splice 0.16 TCGA-98-A53B-01 7 34971139 34971139 A C DPY19L1 3'UTR 0.27 TCGA-98-A53B-01 7 38398123 38398123 G T TRGV3 Missense_Mutation p.T115N 0.15 tolerated(0.18) benign(0.02) TCGA-98-A53B-01 8 105361609 105361609 T A DCSTAMP Missense_Mutation p.Y277N 0.23 deleterious(0) probably_damaging(0.98) TCGA-98-A53B-01 8 113303766 113303766 A C CSMD3 Missense_Mutation p.W2983G 0.07 deleterious(0) probably_damaging(0.98) TCGA-98-A53B-01 8 11994949 11994949 G C USP17L2 Missense_Mutation p.Q441E 0.46 deleterious(0.01) possibly_damaging(0.856) TCGA-98-A53B-01 8 124381352 124381352 C G ATAD2 Missense_Mutation p.R332T 0.10 tolerated(0.12) benign(0.434) TCGA-98-A53B-01 8 124382139 124382139 C G ATAD2 Missense_Mutation p.D285H 0.15 deleterious(0.04) possibly_damaging(0.897) TCGA-98-A53B-01 8 139601610 139601610 T C COL22A1 Silent p.P1589P 0.29 TCGA-98-A53B-01 8 38271111 38271111 G A FGFR1 3'UTR 0.42 TCGA-98-A53B-01 8 39089559 39089559 T A ADAM32 Silent p.A513A 0.33 TCGA-98-A53B-01 8 62212439 62212439 G T CLVS1 Missense_Mutation p.G18V 0.34 tolerated_low_confidence(0.14) benign(0.009) TCGA-98-A53B-01 8 67357596 67357596 C - ADHFE1 Frame_Shift_Del p.I168Lfs*14 0.23 TCGA-98-A53B-01 8 9634334 9634334 G T TNKS 3'UTR 0.35 TCGA-98-A53B-01 9 127990239 127990239 C T RABEPK Missense_Mutation p.R193W 0.30 deleterious(0.02) benign(0.262) TCGA-98-A53B-01 9 131395836 131395836 C T SPTAN1 3'UTR 0.33 TCGA-98-A53B-01 9 139404380 139404380 C - NOTCH1 Frame_Shift_Del p.G925Afs*254 0.29 TCGA-98-A53B-01 X 127185658 127185658 G T ACTRT1 Missense_Mutation p.H176Q 0.49 deleterious(0.04) benign(0.035) TCGA-98-A53B-01 X 134428006 134428006 C - ZNF75D Frame_Shift_Del p.E21Rfs*6 0.40 TCGA-98-A53B-01 X 15794839 15794839 C T CA5B Silent p.D207D 0.37 TCGA-98-A53B-01 X 18959752 18959752 T A PHKA2 Missense_Mutation p.K253N 0.43 deleterious(0) probably_damaging(0.999) TCGA-98-A53B-01 X 24007064 24007064 G T KLHL15 Missense_Mutation p.H263Q 0.32 tolerated(0.2) benign(0.019) TCGA-98-A53B-01 X 6069558 6069558 G A NLGN4X 5'UTR 0.18 TCGA-98-A53B-01 X 86890730 86890730 C - KLHL4 Frame_Shift_Del p.P628Lfs*29 0.29 TCGA-98-A53B-01 X 91133040 91133040 G T PCDH11X Missense_Mutation p.D601Y 0.49 deleterious(0) possibly_damaging(0.908) TCGA-98-A53B-01 X 96139358 96139358 G A RPA4 Missense_Mutation p.G17R 0.46 deleterious(0.01) possibly_damaging(0.879) TCGA-98-A53B-01 X 96139359 96139359 G T RPA4 Missense_Mutation p.G17V 0.46 deleterious(0.01) possibly_damaging(0.843) TCGA-98-A53C-01 13 114542747 114542747 G T GAS6 Missense_Mutation p.F140L 0.06 deleterious(0) benign(0.197) TCGA-98-A53C-01 19 15838935 15838935 T C OR10H2 Missense_Mutation p.F28L 0.05 deleterious(0.02) benign(0.213) TCGA-98-A53C-01 1 17609612 17609612 G A PADI3 3'UTR 0.12 TCGA-98-A53C-01 X 122866906 122866906 T C THOC2 5'Flank 0.07 TCGA-98-A53H-01 10 79737221 79737221 C A POLR3A 3'UTR 0.05 TCGA-98-A53H-01 11 134147630 134147630 G T GLB1L3 Missense_Mutation p.K62N 0.22 tolerated(0.09) possibly_damaging(0.459) TCGA-98-A53H-01 12 57989789 57989789 A T PIP4K2C Missense_Mutation p.H163L 0.05 deleterious(0.02) probably_damaging(0.971) TCGA-98-A53H-01 17 3839684 3839684 C A ATP2A3 Missense_Mutation p.G801C 0.05 deleterious(0) probably_damaging(1) TCGA-98-A53H-01 19 17760379 17760379 A G UNC13A Missense_Mutation p.I486T 0.04 tolerated(0.12) benign(0.263) TCGA-98-A53H-01 1 10364533 10364533 G T KIF1B Intron 0.05 TCGA-98-A53H-01 1 165667675 165667675 C T ALDH9A1 Missense_Mutation p.G41R 0.06 deleterious(0) benign(0.136) TCGA-98-A53H-01 1 165859577 165859577 G T UCK2 Missense_Mutation p.G79V 0.06 deleterious(0) probably_damaging(1) TCGA-98-A53H-01 1 224495793 224495793 C T NVL Missense_Mutation p.G172E 0.04 deleterious(0.01) benign(0.049) TCGA-98-A53H-01 1 228481947 228481947 G T OBSCN Silent p.P4171P 0.06 TCGA-98-A53H-01 1 231474234 231474234 G T SPRTN Silent p.S35S 0.06 TCGA-98-A53H-01 1 237604665 237604665 C A RYR2 Missense_Mutation p.T351K 0.06 benign(0.055) TCGA-98-A53H-01 1 247752249 247752249 G T OR2G2 Silent p.T196T 0.04 TCGA-98-A53H-01 1 248224039 248224039 C A OR2L3 Missense_Mutation p.P19Q 0.03 tolerated(0.46) benign(0.012) TCGA-98-A53H-01 2 143913127 143913127 C A ARHGAP15 Missense_Mutation p.A23D 0.08 tolerated(0.07) possibly_damaging(0.886) TCGA-98-A53H-01 2 179472198 179472198 A T TTN Missense_Mutation p.H17739Q 0.03 TCGA-98-A53H-01 2 74750078 74750078 G A DQX1 Missense_Mutation p.P403L 0.06 deleterious(0) possibly_damaging(0.543) TCGA-98-A53H-01 7 147926846 147926846 G T CNTNAP2 Missense_Mutation p.R1119L 0.06 deleterious(0) probably_damaging(0.999) TCGA-98-A53H-01 7 4026875 4026875 C A SDK1 Missense_Mutation p.H684Q 0.04 deleterious(0.03) benign(0.175) TCGA-98-A53H-01 7 82784272 82784272 C A PCLO Missense_Mutation p.G562V 0.03 unknown(0) TCGA-98-A53H-01 8 53084686 53084686 A G ST18 Silent p.P245P 0.07 TCGA-98-A53H-01 8 89068443 89068443 G C MMP16 Missense_Mutation p.T429S 0.05 tolerated(0.52) benign(0.002) TCGA-98-A53H-01 X 101858812 101858812 T A ARMCX5 3'UTR 0.09 TCGA-98-A53H-01 X 101971912 101971912 C A GPRASP2 Missense_Mutation p.H705Q 0.04 tolerated(0.06) probably_damaging(0.953) TCGA-98-A53H-01 X 109247086 109247086 C T TMEM164 Silent p.D28D 0.03 TCGA-98-A53H-01 X 109697203 109697203 A G RGAG1 Missense_Mutation p.T1120A 0.04 tolerated_low_confidence(0.07) benign(0.094) TCGA-98-A53H-01 X 111195271 111195271 C A TRPC5 Missense_Mutation p.Q126H 0.04 tolerated(0.12) probably_damaging(0.992) TCGA-98-A53H-01 X 129272677 129272677 C A AIFM1 Splice_Site p.X287_splice 0.09 TCGA-98-A53H-01 X 130413147 130413147 G T IGSF1 Missense_Mutation p.L579M 0.05 deleterious(0.01) probably_damaging(0.93) TCGA-98-A53H-01 X 142803839 142803839 A T SPANXN2 5'UTR 0.06 TCGA-98-A53H-01 X 150891114 150891114 C A FATE1 Missense_Mutation p.N145K 0.06 deleterious(0) benign(0.089) TCGA-98-A53H-01 X 151093083 151093083 G C MAGEA4 Missense_Mutation p.G316A 0.05 tolerated(0.15) probably_damaging(0.961) TCGA-98-A53H-01 X 151303722 151303722 G T MAGEA10 Missense_Mutation p.P124Q 0.05 tolerated(0.11) benign(0.165) TCGA-98-A53H-01 X 153134339 153134339 G T L1CAM Missense_Mutation p.L446I 0.04 deleterious(0.01) probably_damaging(0.967) TCGA-98-A53H-01 X 70514308 70514308 G C NONO Missense_Mutation p.E194Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-98-A53H-01 X 74288953 74288953 C A ABCB7 Missense_Mutation p.R517S 0.06 deleterious(0) probably_damaging(0.973) TCGA-98-A53H-01 X 77393259 77393259 G T TAF9B Missense_Mutation p.S131Y 0.06 deleterious(0.01) benign(0.418) TCGA-98-A53I-01 10 105006468 105006468 C A RPEL1 3'UTR 0.16 TCGA-98-A53I-01 10 106907390 106907390 A C SORCS3 Missense_Mutation p.S440R 0.39 deleterious(0) probably_damaging(0.987) TCGA-98-A53I-01 10 118228831 118228831 T C PNLIPRP3 Splice_Site p.X354_splice 0.21 TCGA-98-A53I-01 10 135012159 135012159 C A KNDC1 Missense_Mutation p.S716Y 0.30 tolerated(0.1) benign(0.143) TCGA-98-A53I-01 10 14563035 14563035 C T FAM107B 3'UTR 0.20 TCGA-98-A53I-01 10 14572403 14572403 T A FAM107B Missense_Mutation p.K194I 0.27 deleterious(0) probably_damaging(0.989) TCGA-98-A53I-01 10 14896207 14896207 C A HSPA14 Nonsense_Mutation p.S273* 0.24 TCGA-98-A53I-01 10 17747016 17747016 A T STAM Missense_Mutation p.I350F 0.16 deleterious(0.03) benign(0.149) TCGA-98-A53I-01 10 17891661 17891661 A G MRC1L1 Missense_Mutation p.K381R 0.28 benign(0.019) TCGA-98-A53I-01 10 18331829 18331829 C G SLC39A12 3'UTR 0.28 TCGA-98-A53I-01 10 18885232 18885232 G A NSUN6 Missense_Mutation p.H228Y 0.17 tolerated(0.06) benign(0.182) TCGA-98-A53I-01 10 25464532 25464532 G A GPR158 Nonsense_Mutation p.W61* 0.30 TCGA-98-A53I-01 10 26505663 26505663 C T GAD2 5'UTR 0.50 TCGA-98-A53I-01 10 30602434 30602434 C T MTPAP 3'UTR 0.39 TCGA-98-A53I-01 10 32329358 32329358 A C KIF5B Missense_Mutation p.I81R 0.28 deleterious(0) probably_damaging(0.999) TCGA-98-A53I-01 10 38345536 38345536 A - ZNF33A 3'UTR 0.20 TCGA-98-A53I-01 10 43615153 43615153 G T RET Missense_Mutation p.W856L 0.18 deleterious(0) possibly_damaging(0.603) TCGA-98-A53I-01 10 48388864 48388864 C T RBP3 Missense_Mutation p.A672T 0.28 tolerated(0.55) possibly_damaging(0.499) TCGA-98-A53I-01 10 48389234 48389234 G C RBP3 Silent p.A548A 0.17 TCGA-98-A53I-01 10 50916418 50916418 C A C10orf53 Missense_Mutation p.P77T 0.28 deleterious_low_confidence(0.01) benign(0.187) TCGA-98-A53I-01 10 95085598 95085598 C T MYOF Silent p.Q1752Q 0.12 TCGA-98-A53I-01 11 102220837 102220837 C T BIRC2 Silent p.F84F 0.36 TCGA-98-A53I-01 11 102586131 102586131 C T MMP8 Missense_Mutation p.E314K 0.11 deleterious(0.02) possibly_damaging(0.794) TCGA-98-A53I-01 11 123753722 123753722 C A TMEM225 3'UTR 0.38 TCGA-98-A53I-01 11 125864860 125864860 C A CDON Missense_Mutation p.G817V 0.24 deleterious(0) probably_damaging(0.964) TCGA-98-A53I-01 11 1267064 1267064 C G MUC5B Missense_Mutation p.S2985C 0.26 unknown(0) TCGA-98-A53I-01 11 14989361 14989361 A T CALCA 3'Flank 0.20 TCGA-98-A53I-01 11 15198671 15198671 A T INSC Silent p.L186L 0.10 TCGA-98-A53I-01 11 15222462 15222462 C A INSC Nonsense_Mutation p.C309* 0.17 TCGA-98-A53I-01 11 2432688 2432688 C T TRPM5 Silent p.Q892Q 0.38 TCGA-98-A53I-01 11 280953 280953 G T NLRP6 Missense_Mutation p.D407Y 0.27 deleterious(0) probably_damaging(0.997) TCGA-98-A53I-01 11 44957178 44957178 C T TP53I11 Missense_Mutation p.A124T 0.29 tolerated(0.15) benign(0.053) TCGA-98-A53I-01 11 45926790 45926790 G A MAPK8IP1 Missense_Mutation p.E685K 0.22 deleterious(0.03) possibly_damaging(0.721) TCGA-98-A53I-01 11 46722605 46722606 - G ZNF408 Frame_Shift_Ins p.A4Gfs*121 0.27 TCGA-98-A53I-01 11 5322646 5322646 G T OR51B4 Silent p.L177L 0.11 TCGA-98-A53I-01 11 55579366 55579366 G T OR5L1 Missense_Mutation p.V142L 0.27 tolerated(0.25) benign(0.02) TCGA-98-A53I-01 11 55653080 55653080 C T TRIM51 Missense_Mutation p.T59M 0.15 deleterious(0) possibly_damaging(0.87) TCGA-98-A53I-01 11 55861272 55861272 A G OR8I2 Missense_Mutation p.I163M 0.34 tolerated(1) probably_damaging(0.999) TCGA-98-A53I-01 11 55873222 55873222 A T OR8H2 Missense_Mutation p.Q235L 0.26 deleterious(0.05) benign(0.013) TCGA-98-A53I-01 11 58274709 58274709 C A OR5B21 Missense_Mutation p.R290S 0.27 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-98-A53I-01 11 58956229 58956229 G C DTX4 Missense_Mutation p.K319N 0.23 deleterious(0.05) benign(0.212) TCGA-98-A53I-01 11 59807797 59807797 C A OOSP2 5'UTR 0.21 TCGA-98-A53I-01 11 6129340 6129340 A G OR56B4 Missense_Mutation p.H111R 0.13 deleterious(0.03) benign(0.35) TCGA-98-A53I-01 11 64662287 64662287 C A ATG2A 3'UTR 0.27 TCGA-98-A53I-01 11 71202923 71202923 G A NADSYN1 Missense_Mutation p.D580N 0.34 tolerated(0.16) benign(0.012) TCGA-98-A53I-01 11 7507099 7507099 T A OLFML1 5'UTR 0.14 TCGA-98-A53I-01 11 82959148 82959148 A G ANKRD42 3'UTR 0.33 TCGA-98-A53I-01 11 84027867 84027867 C A DLG2 Intron 0.11 TCGA-98-A53I-01 11 84027868 84027868 C A DLG2 Intron 0.14 TCGA-98-A53I-01 11 85366677 85366677 G C TMEM126A Missense_Mutation p.G107A 0.11 tolerated(0.32) benign(0.252) TCGA-98-A53I-01 11 92088419 92088419 T A FAT3 Silent p.A1047A 0.21 TCGA-98-A53I-01 12 100904723 100904723 C A NR1H4 Missense_Mutation p.P93T 0.24 tolerated(0.57) benign(0.003) TCGA-98-A53I-01 12 102067346 102067346 C T MYBPC1 Nonsense_Mutation p.Q912* 0.22 TCGA-98-A53I-01 12 110348999 110348999 G A TCHP Silent p.Q337Q 0.67 TCGA-98-A53I-01 12 110974896 110974896 T A PPTC7 Silent p.G287G 0.32 TCGA-98-A53I-01 12 112227720 112227720 G T ALDH2 Silent p.V178V 0.26 TCGA-98-A53I-01 12 120565633 120565633 C T GCN1L1 3'UTR 0.12 TCGA-98-A53I-01 12 123687341 123687341 C T MPHOSPH9 Silent p.P385P 0.22 TCGA-98-A53I-01 12 12483720 12483720 T A MANSC1 Silent p.S179S 0.23 TCGA-98-A53I-01 12 129559475 129559475 G T TMEM132D Missense_Mutation p.P749T 0.25 tolerated(0.35) benign(0.118) TCGA-98-A53I-01 12 13717002 13717002 C G GRIN2B Missense_Mutation p.R1057P 0.22 deleterious(0.04) probably_damaging(0.989) TCGA-98-A53I-01 12 16055892 16055892 G T STRAP Missense_Mutation p.A345S 0.22 tolerated_low_confidence(0.4) benign(0.002) TCGA-98-A53I-01 12 2692065 2692065 G T CACNA1C Missense_Mutation p.M727I 0.47 tolerated(0.18) benign(0.268) TCGA-98-A53I-01 12 29911656 29911656 C A TMTC1 Missense_Mutation p.A179S 0.12 tolerated(0.57) benign(0.039) TCGA-98-A53I-01 12 40681284 40681284 A T LRRK2 Missense_Mutation p.I878F 0.23 tolerated(0.44) benign(0.197) TCGA-98-A53I-01 12 43770429 43770429 T C ADAMTS20 Missense_Mutation p.M1675V 0.21 tolerated(0.06) benign(0.02) TCGA-98-A53I-01 12 43846142 43846142 T C ADAMTS20 Missense_Mutation p.M672V 0.17 deleterious(0) benign(0.113) TCGA-98-A53I-01 12 4430404 4430404 C T C12orf5 5'UTR 0.30 TCGA-98-A53I-01 12 49415466 49415466 G A KMT2D 3'UTR 0.30 TCGA-98-A53I-01 12 54799151 54799151 C T ITGA5 Missense_Mutation p.D342N 0.18 deleterious(0) probably_damaging(1) TCGA-98-A53I-01 12 63963124 63963124 C T DPY19L2 Missense_Mutation p.R669Q 0.21 deleterious(0) probably_damaging(0.995) TCGA-98-A53I-01 12 65462622 65462622 C T WIF1 Missense_Mutation p.V154M 0.24 deleterious(0.01) possibly_damaging(0.885) TCGA-98-A53I-01 12 95603159 95603159 T C FGD6 Missense_Mutation p.K634R 0.24 tolerated(0.07) probably_damaging(0.999) TCGA-98-A53I-01 13 115012408 115012408 G T CDC16 Silent p.V300V 0.24 TCGA-98-A53I-01 13 42876483 42876483 G A AKAP11 Missense_Mutation p.A1201T 0.31 tolerated(0.39) benign(0.013) TCGA-98-A53I-01 13 78474681 78474681 C A EDNRB Missense_Mutation p.D444Y 0.38 deleterious(0.02) benign(0.096) TCGA-98-A53I-01 14 106453099 106453099 C G IGHV1-2 Missense_Mutation p.W3S 0.29 deleterious(0) probably_damaging(0.96) TCGA-98-A53I-01 14 21109730 21109730 G C OR6S1 Missense_Mutation p.L41V 0.31 tolerated(0.25) probably_damaging(0.994) TCGA-98-A53I-01 14 21623844 21623844 A C OR5AU1 Missense_Mutation p.L114R 0.15 deleterious(0) probably_damaging(0.998) TCGA-98-A53I-01 14 22111648 22111648 T C TRAV1-2 Silent p.A56A 0.23 TCGA-98-A53I-01 14 26939638 26939638 G T NOVA1 Intron 0.21 TCGA-98-A53I-01 14 31077270 31077270 A T G2E3 Missense_Mutation p.I499F 0.06 tolerated(0.52) benign(0.01) TCGA-98-A53I-01 14 33015678 33015678 C G AKAP6 Missense_Mutation p.Q607E 0.21 tolerated(0.24) benign(0) TCGA-98-A53I-01 14 33684399 33684399 T G NPAS3 Missense_Mutation p.L51W 0.33 deleterious(0) possibly_damaging(0.869) TCGA-98-A53I-01 14 44976231 44976231 C A FSCB 5'UTR 0.09 TCGA-98-A53I-01 14 47504338 47504338 A T MDGA2 Nonsense_Mutation p.Y565* 0.29 TCGA-98-A53I-01 14 50360925 50360925 C G ARF6 Silent p.T157T 0.18 TCGA-98-A53I-01 14 60601040 60601040 C A PCNXL4 3'UTR 0.12 TCGA-98-A53I-01 14 66136062 66136062 T A FUT8 Silent p.I233I 0.31 TCGA-98-A53I-01 14 88414207 88414207 C A GALC Missense_Mutation p.G452C 0.24 deleterious(0) probably_damaging(0.992) TCGA-98-A53I-01 14 94722819 94722819 C - PPP4R4 Frame_Shift_Del p.V632* 0.16 TCGA-98-A53I-01 15 100331916 100331916 C G AC090825.1 5'Flank 0.19 TCGA-98-A53I-01 15 24921980 24921980 C A NPAP1 Silent p.R322R 0.12 TCGA-98-A53I-01 15 25463809 25463809 C T SNORD115-27 5'Flank 0.19 TCGA-98-A53I-01 15 25472174 25472174 C A SNORD115-33 5'Flank 0.22 TCGA-98-A53I-01 15 31776504 31776504 T C OTUD7A Missense_Mutation p.T592A 0.41 tolerated(0.1) benign(0.138) TCGA-98-A53I-01 15 35234262 35234262 C G AQR Missense_Mutation p.S164T 0.14 tolerated(0.25) benign(0.007) TCGA-98-A53I-01 15 41796444 41796444 T C LTK Splice_Site p.X783_splice 0.23 TCGA-98-A53I-01 15 42602534 42602534 A T GANC Missense_Mutation p.Y259F 0.22 benign(0.219) TCGA-98-A53I-01 15 44150895 44150895 G T WDR76 Missense_Mutation p.R479L 0.27 tolerated(0.51) benign(0.019) TCGA-98-A53I-01 15 50288920 50288920 A G ATP8B4 Silent p.V181V 0.24 TCGA-98-A53I-01 15 51535043 51535043 C A CYP19A1 Missense_Mutation p.A23S 0.24 tolerated_low_confidence(0.34) benign(0.004) TCGA-98-A53I-01 15 51535044 51535044 A T CYP19A1 Silent p.P22P 0.25 TCGA-98-A53I-01 15 55916589 55916589 T A PRTG Missense_Mutation p.E1015V 0.21 tolerated(0.29) benign(0.001) TCGA-98-A53I-01 15 69672227 69672227 C T PAQR5 Silent p.F19F 0.27 TCGA-98-A53I-01 15 75108864 75108864 G C LMAN1L Missense_Mutation p.E143Q 0.12 tolerated(0.3) benign(0.063) TCGA-98-A53I-01 16 12618596 12618596 A T SNX29 Missense_Mutation p.Q739L 0.12 deleterious(0) probably_damaging(0.996) TCGA-98-A53I-01 16 1636140 1636140 C A IFT140 Silent p.T382T 0.23 TCGA-98-A53I-01 16 18532258 18532258 G T NOMO2 Missense_Mutation p.S701Y 0.17 deleterious(0.01) probably_damaging(0.931) TCGA-98-A53I-01 16 19126472 19126472 A G ITPRIPL2 Missense_Mutation p.K230R 0.16 tolerated(0.26) possibly_damaging(0.899) TCGA-98-A53I-01 16 20975976 20975976 C T DNAH3 Missense_Mutation p.R3077H 0.17 deleterious(0) probably_damaging(1) TCGA-98-A53I-01 16 23101988 23101988 G T USP31 Missense_Mutation p.L458M 0.32 deleterious(0.02) probably_damaging(0.968) TCGA-98-A53I-01 16 24196505 24196506 - T PRKCB Frame_Shift_Ins p.G537Wfs*6 0.13 TCGA-98-A53I-01 16 28892328 28892328 G A ATP2A1 Silent p.V104V 0.32 TCGA-98-A53I-01 16 31485972 31485972 G C TGFB1I1 Missense_Mutation p.S203T 0.18 tolerated(0.08) possibly_damaging(0.576) TCGA-98-A53I-01 16 31494552 31494552 A G SLC5A2 Missense_Mutation p.Y32C 0.26 deleterious(0) probably_damaging(0.999) TCGA-98-A53I-01 16 48595153 48595153 T G N4BP1 Silent p.P467P 0.28 TCGA-98-A53I-01 16 51173570 51173570 G A SALL1 Missense_Mutation p.P855S 0.11 tolerated(0.11) benign(0.349) TCGA-98-A53I-01 16 67424522 67424522 G A TPPP3 Missense_Mutation p.R68W 0.14 deleterious(0.01) probably_damaging(1) TCGA-98-A53I-01 16 67913588 67913588 C G EDC4 Missense_Mutation p.P578A 0.19 tolerated(0.05) probably_damaging(0.942) TCGA-98-A53I-01 16 70305825 70305825 T G AARS Missense_Mutation p.E177A 0.26 deleterious(0) probably_damaging(0.999) TCGA-98-A53I-01 17 19319332 19319332 G C RNF112 Silent p.G580G 0.38 TCGA-98-A53I-01 17 21146683 21146683 G A C17orf103 Silent p.I94I 0.41 TCGA-98-A53I-01 17 29184029 29184029 G T ATAD5 Nonsense_Mutation p.E898* 0.19 TCGA-98-A53I-01 17 3563804 3563804 G A CTNS Intron 0.58 TCGA-98-A53I-01 17 38449848 38449848 G A CDC6 Silent p.L267L 0.32 TCGA-98-A53I-01 17 39114762 39114762 A T KRT39 3'UTR 0.21 TCGA-98-A53I-01 17 40271320 40271320 A G KAT2A Missense_Mutation p.V339A 0.26 tolerated(0.79) benign(0.001) TCGA-98-A53I-01 17 48190247 48190247 G T SAMD14 3'UTR 0.22 TCGA-98-A53I-01 17 53798126 53798126 G A TMEM100 Silent p.S102S 0.21 TCGA-98-A53I-01 17 56403729 56403729 C G BZRAP1 Missense_Mutation p.K165N 0.24 deleterious(0) probably_damaging(0.999) TCGA-98-A53I-01 17 7579369 7579369 G C TP53 Missense_Mutation p.S106R 0.48 tolerated(0.41) benign(0.27) TCGA-98-A53I-01 17 79657231 79657231 C T HGS Silent p.F145F 0.40 TCGA-98-A53I-01 17 79866944 79866944 C - PCYT2 Intron 0.30 TCGA-98-A53I-01 17 80038789 80038789 C T FASN Missense_Mutation p.C2202Y 0.32 deleterious(0.03) benign(0.002) TCGA-98-A53I-01 17 80426666 80426666 G A NARF Silent p.V93V 0.25 TCGA-98-A53I-01 18 43422121 43422121 G C SIGLEC15 Missense_Mutation p.R319P 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.52) TCGA-98-A53I-01 18 44424783 44424783 T C PIAS2 Missense_Mutation p.Y294C 0.36 deleterious(0) possibly_damaging(0.802) TCGA-98-A53I-01 18 44435327 44435327 C G PIAS2 Missense_Mutation p.G236A 0.18 deleterious(0.02) benign(0.042) TCGA-98-A53I-01 18 50923675 50923675 T C DCC Intron 0.21 TCGA-98-A53I-01 18 56414977 56414977 A G MALT1 Missense_Mutation p.H793R 0.23 tolerated_low_confidence(0.18) benign(0.001) TCGA-98-A53I-01 18 58038912 58038912 T - MC4R Frame_Shift_Del p.K224Rfs*18 0.24 TCGA-98-A53I-01 18 580660 580660 C T CETN1 Silent p.I84I 0.32 TCGA-98-A53I-01 18 76752163 76752163 G T SALL3 Missense_Mutation p.A58S 0.50 deleterious(0) unknown(0) TCGA-98-A53I-01 19 11942183 11942183 G A ZNF440 Silent p.R64R 0.21 TCGA-98-A53I-01 19 1234664 1234664 A G C19orf26 Missense_Mutation p.I178T 0.29 deleterious(0.02) benign(0.21) TCGA-98-A53I-01 19 13216202 13216202 G A TRMT1 Missense_Mutation p.A571V 0.31 tolerated(0.35) benign(0.002) TCGA-98-A53I-01 19 13928081 13928081 G T ZSWIM4 Missense_Mutation p.G411V 0.23 deleterious(0) unknown(0) TCGA-98-A53I-01 19 15234055 15234055 C T ILVBL Splice_Site p.X113_splice 0.28 TCGA-98-A53I-01 19 16545325 16545325 G T EPS15L1 Intron 0.27 TCGA-98-A53I-01 19 17937493 17937493 G - JAK3 3'UTR 0.13 TCGA-98-A53I-01 19 22847728 22847728 A C ZNF492 Missense_Mutation p.K419N 0.21 deleterious(0.01) probably_damaging(0.989) TCGA-98-A53I-01 19 22942441 22942441 G T ZNF99 Missense_Mutation p.S90R 0.17 tolerated(0.28) benign(0.129) TCGA-98-A53I-01 19 23414989 23414989 T A ZNF724P Missense_Mutation p.Y37F 0.15 deleterious(0.02) possibly_damaging(0.874) TCGA-98-A53I-01 19 23927110 23927110 G T ZNF681 Missense_Mutation p.S414R 0.09 tolerated(1) benign(0) TCGA-98-A53I-01 19 23927111 23927111 C A ZNF681 Missense_Mutation p.S414I 0.10 tolerated(0.41) benign(0.106) TCGA-98-A53I-01 19 36017596 36017596 C A SBSN Missense_Mutation p.A530S 0.32 tolerated(0.22) benign(0.288) TCGA-98-A53I-01 19 36297668 36297668 A C PRODH2 Missense_Mutation p.L324R 0.35 deleterious(0) probably_damaging(0.997) TCGA-98-A53I-01 19 40225673 40225673 G T CLC Missense_Mutation p.T19N 0.23 tolerated(0.2) possibly_damaging(0.547) TCGA-98-A53I-01 19 40732389 40732389 C A CNTD2 Missense_Mutation p.V54F 0.35 tolerated(0.08) benign(0.23) TCGA-98-A53I-01 19 4171436 4171436 C T CREB3L3 Silent p.P344P 0.32 TCGA-98-A53I-01 19 47823424 47823424 C T C5AR1 Silent p.I130I 0.29 TCGA-98-A53I-01 19 49573349 49573349 G C KCNA7 Missense_Mutation p.P448A 0.26 tolerated_low_confidence(0.41) benign(0.002) TCGA-98-A53I-01 19 50173575 50173575 C T BCL2L12 Missense_Mutation p.P262S 0.50 tolerated(0.11) benign(0.11) TCGA-98-A53I-01 19 52033769 52033769 T A SIGLEC6 Intron 0.22 TCGA-98-A53I-01 19 53085472 53085480 ATGATGAAG - ZNF701 In_Frame_Del p.M121_M123del 0.08 TCGA-98-A53I-01 19 54621686 54621686 G A PRPF31 Missense_Mutation p.D10N 0.11 deleterious(0) unknown(0) TCGA-98-A53I-01 19 54662068 54662068 T A LENG1 Silent p.G88G 0.26 TCGA-98-A53I-01 19 54662069 54662069 C A LENG1 Missense_Mutation p.G88V 0.28 deleterious(0.04) possibly_damaging(0.871) TCGA-98-A53I-01 19 54664883 54664883 G A TMC4 Missense_Mutation p.L607F 0.22 tolerated(0.4) benign(0.124) TCGA-98-A53I-01 19 58370594 58370594 G T ZNF587 Nonsense_Mutation p.E272* 0.19 TCGA-98-A53I-01 19 9074332 9074332 T A MUC16 Missense_Mutation p.N4372Y 0.28 unknown(0) TCGA-98-A53I-01 1 10292407 10292407 G A KIF1B Silent p.K7K 0.40 TCGA-98-A53I-01 1 103405930 103405930 G T COL11A1 Missense_Mutation p.P1113T 0.29 unknown(0) TCGA-98-A53I-01 1 110603406 110603406 C T ALX3 Silent p.S327S 0.13 TCGA-98-A53I-01 1 114445426 114445426 C T AP4B1 Missense_Mutation p.A58T 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-98-A53I-01 1 151108068 151108068 G A SEMA6C Missense_Mutation p.R478W 0.33 deleterious(0) possibly_damaging(0.835) TCGA-98-A53I-01 1 155640162 155640162 A G YY1AP1 Missense_Mutation p.L364P 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-98-A53I-01 1 156038071 156038071 G T RAB25 Missense_Mutation p.G84C 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-98-A53I-01 1 156810817 156810817 C A INSRR Nonsense_Mutation p.E1248* 0.18 TCGA-98-A53I-01 1 156810818 156810818 C T INSRR Silent p.Q1247Q 0.18 TCGA-98-A53I-01 1 156844391 156844391 G T NTRK1 Silent p.V408V 0.32 TCGA-98-A53I-01 1 158326281 158326281 C A CD1E Intron 0.19 TCGA-98-A53I-01 1 158576425 158576425 T A OR10Z1 Missense_Mutation p.L66Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-98-A53I-01 1 158627279 158627279 T C SPTA1 Silent p.E931E 0.14 TCGA-98-A53I-01 1 160264642 160264642 C T COPA Missense_Mutation p.G837R 0.39 tolerated(0.11) benign(0.123) TCGA-98-A53I-01 1 162741935 162741935 C T DDR2 Silent p.A542A 0.20 TCGA-98-A53I-01 1 165175261 165175261 G A LMX1A Silent p.N276N 0.28 TCGA-98-A53I-01 1 165179957 165179957 C T LMX1A Nonsense_Mutation p.W242* 0.28 TCGA-98-A53I-01 1 173907692 173907692 T A RC3H1 3'UTR 0.24 TCGA-98-A53I-01 1 175105064 175105064 G T TNN Missense_Mutation p.K1138N 0.41 tolerated(0.31) benign(0.245) TCGA-98-A53I-01 1 176525680 176525680 G T PAPPA2 Missense_Mutation p.R74S 0.28 tolerated_low_confidence(0.18) benign(0.004) TCGA-98-A53I-01 1 177250484 177250484 G A BRINP2 Silent p.R724R 0.26 TCGA-98-A53I-01 1 185892750 185892750 G A HMCN1 Missense_Mutation p.R417K 0.10 possibly_damaging(0.745) TCGA-98-A53I-01 1 185985098 185985098 A G HMCN1 Missense_Mutation p.M1640V 0.32 benign(0.001) TCGA-98-A53I-01 1 186056748 186056748 G C HMCN1 Missense_Mutation p.G3112R 0.28 probably_damaging(1) TCGA-98-A53I-01 1 186056749 186056749 G T HMCN1 Missense_Mutation p.G3112V 0.28 probably_damaging(1) TCGA-98-A53I-01 1 202272453 202272453 G - LGR6 Frame_Shift_Del p.G326Afs*8 0.32 TCGA-98-A53I-01 1 20517557 20517557 G T UBXN10 Missense_Mutation p.C168F 0.27 tolerated(0.12) benign(0.004) TCGA-98-A53I-01 1 206318358 206318358 G A CTSE Missense_Mutation p.R39Q 0.62 tolerated(0.43) benign(0.007) TCGA-98-A53I-01 1 214170884 214170884 C T PROX1 Missense_Mutation p.H336Y 0.44 tolerated(0.11) benign(0.119) TCGA-98-A53I-01 1 243434347 243434347 A G SDCCAG8 Silent p.R96R 0.23 TCGA-98-A53I-01 1 248039223 248039223 C A TRIM58 Missense_Mutation p.A298D 0.42 tolerated(0.64) benign(0.016) TCGA-98-A53I-01 1 248039224 248039224 C G TRIM58 Silent p.A298A 0.41 TCGA-98-A53I-01 1 248343795 248343795 G T OR2M2 Missense_Mutation p.G170W 0.49 deleterious(0) probably_damaging(0.996) TCGA-98-A53I-01 1 29023462 29023462 T C GMEB1 Missense_Mutation p.I165T 0.29 deleterious(0) probably_damaging(0.953) TCGA-98-A53I-01 1 33799823 33799828 GTTTCC - PHC2 In_Frame_Del p.G541_N542del 0.30 TCGA-98-A53I-01 1 33998707 33998707 C T CSMD2 Missense_Mutation p.E3228K 0.32 tolerated(0.37) probably_damaging(0.937) TCGA-98-A53I-01 1 33998708 33998708 G C CSMD2 Silent p.S3227S 0.35 TCGA-98-A53I-01 1 38226813 38226813 G C EPHA10 Intron 0.14 TCGA-98-A53I-01 1 39500170 39500170 C A NDUFS5 3'UTR 0.26 TCGA-98-A53I-01 1 39801849 39801849 A G MACF1 Intron 0.32 TCGA-98-A53I-01 1 57189292 57189292 C T C1orf168 Missense_Mutation p.R648K 0.32 tolerated(1) benign(0.021) TCGA-98-A53I-01 1 67592931 67592931 C A C1orf141 5'UTR 0.30 TCGA-98-A53I-01 1 71512794 71512794 G T PTGER3 Missense_Mutation p.A156E 0.41 deleterious(0) probably_damaging(0.975) TCGA-98-A53I-01 1 79128478 79128478 A G IFI44 Silent p.V401V 0.29 TCGA-98-A53I-01 20 16729081 16729081 T G OTOR Missense_Mutation p.L12R 0.38 deleterious(0.03) possibly_damaging(0.534) TCGA-98-A53I-01 20 20392790 20392790 T C RALGAPA2 Missense_Mutation p.Y1833C 0.15 deleterious(0) probably_damaging(0.956) TCGA-98-A53I-01 20 23473680 23473680 C T CST8 Missense_Mutation p.A106V 0.43 tolerated(1) benign(0.002) TCGA-98-A53I-01 20 2375212 2375212 C T TGM6 Missense_Mutation p.T41M 0.15 deleterious(0.03) benign(0.21) TCGA-98-A53I-01 20 2384436 2384436 G C TGM6 Missense_Mutation p.V435L 0.12 tolerated(0.3) benign(0.376) TCGA-98-A53I-01 20 23966740 23966740 G A GGTLC1 Missense_Mutation p.P93S 0.40 deleterious(0.01) probably_damaging(0.92) TCGA-98-A53I-01 20 2840393 2840393 G A VPS16 Missense_Mutation p.D28N 0.11 tolerated(1) benign(0.003) TCGA-98-A53I-01 20 3214253 3214253 G A SLC4A11 Silent p.H255H 0.43 TCGA-98-A53I-01 20 3781501 3781501 G C CDC25B Missense_Mutation p.D191H 0.08 deleterious(0) probably_damaging(0.979) TCGA-98-A53I-01 20 44506050 44506050 G T ZSWIM3 Missense_Mutation p.D285Y 0.59 deleterious(0) probably_damaging(0.961) TCGA-98-A53I-01 20 44592402 44592402 G C ZNF335 Missense_Mutation p.R444G 0.33 deleterious(0.03) possibly_damaging(0.7) TCGA-98-A53I-01 20 47989804 47989804 G C KCNB1 Missense_Mutation p.Q765E 0.18 tolerated_low_confidence(1) benign(0.002) TCGA-98-A53I-01 20 60895690 60895690 C T LAMA5 Silent p.E2228E 0.45 TCGA-98-A53I-01 20 61439077 61439077 G T OGFR Intron 0.38 TCGA-98-A53I-01 21 10944724 10944724 C A TPTE Silent p.L170L 0.21 TCGA-98-A53I-01 21 10998260 10998260 C G TPTE RNA 0.10 TCGA-98-A53I-01 21 32624165 32624165 C T TIAM1 Missense_Mutation p.R435H 0.20 deleterious(0) probably_damaging(0.999) TCGA-98-A53I-01 21 34915450 34915450 C T SON Missense_Mutation p.R18W 0.28 possibly_damaging(0.689) TCGA-98-A53I-01 21 39426855 39426855 A T DSCR4 3'UTR 0.14 TCGA-98-A53I-01 21 41459214 41459214 G T DSCAM Missense_Mutation p.A1284D 0.10 deleterious(0) possibly_damaging(0.873) TCGA-98-A53I-01 22 17488993 17488993 C T GAB4 Silent p.P4P 0.42 TCGA-98-A53I-01 22 21081656 21081656 G A PI4KA Silent p.A1601A 0.21 TCGA-98-A53I-01 22 29706653 29706653 G T GAS2L1 Missense_Mutation p.R256L 0.21 deleterious(0) probably_damaging(0.951) TCGA-98-A53I-01 22 30722842 30722842 G T TBC1D10A Missense_Mutation p.P10Q 0.29 tolerated_low_confidence(0.67) benign(0.195) TCGA-98-A53I-01 22 32217537 32217537 G T DEPDC5 Missense_Mutation p.M640I 0.20 tolerated(0.26) benign(0.263) TCGA-98-A53I-01 22 45580626 45580626 A C NUP50 3'UTR 0.21 TCGA-98-A53I-01 22 45959078 45959078 C G FBLN1 Intron 0.26 TCGA-98-A53I-01 2 112944904 112944904 C A FBLN7 Missense_Mutation p.R381S 0.25 deleterious(0.02) benign(0.092) TCGA-98-A53I-01 2 113532775 113532775 C G IL1A Missense_Mutation p.G229R 0.26 tolerated(0.2) probably_damaging(0.998) TCGA-98-A53I-01 2 119699780 119699780 G T MARCO 5'UTR 0.11 TCGA-98-A53I-01 2 128479469 128479469 G T WDR33 Missense_Mutation p.Q538K 0.26 deleterious_low_confidence(0.01) unknown(0) TCGA-98-A53I-01 2 136023159 136023159 G A ZRANB3 Missense_Mutation p.A495V 0.18 tolerated(0.21) benign(0.077) TCGA-98-A53I-01 2 136566963 136566963 G A LCT Missense_Mutation p.P985L 0.20 deleterious(0) probably_damaging(1) TCGA-98-A53I-01 2 136574952 136574952 G T LCT Missense_Mutation p.H556N 0.18 deleterious(0.02) probably_damaging(0.988) TCGA-98-A53I-01 2 136614441 136614441 C A MCM6 Missense_Mutation p.A495S 0.21 deleterious(0.02) probably_damaging(0.989) TCGA-98-A53I-01 2 166152362 166152362 G T SCN2A Missense_Mutation p.G10V 0.21 deleterious(0) probably_damaging(1) TCGA-98-A53I-01 2 167289163 167289163 C - SCN7A Frame_Shift_Del p.A753Qfs*7 0.19 TCGA-98-A53I-01 2 1677580 1677580 C T PXDN Missense_Mutation p.E285K 0.10 tolerated(0.07) benign(0.081) TCGA-98-A53I-01 2 170034353 170034353 T A LRP2 Silent p.P3451P 0.23 TCGA-98-A53I-01 2 170070332 170070332 G A LRP2 Nonsense_Mutation p.Q1959* 0.23 TCGA-98-A53I-01 2 170094612 170094612 C A LRP2 Missense_Mutation p.D1499Y 0.19 probably_damaging(0.95) TCGA-98-A53I-01 2 170094613 170094613 C A LRP2 Silent p.T1498T 0.19 TCGA-98-A53I-01 2 178098944 178098944 C G NFE2L2 Missense_Mutation p.R34P 0.33 deleterious(0) probably_damaging(1) TCGA-98-A53I-01 2 179401671 179401671 G T TTN Missense_Mutation p.P33389T 0.21 TCGA-98-A53I-01 2 179418868 179418868 G T TTN Missense_Mutation p.P29657Q 0.25 TCGA-98-A53I-01 2 179425351 179425351 C T TTN Missense_Mutation p.G28503E 0.37 TCGA-98-A53I-01 2 179435309 179435309 G T TTN Missense_Mutation p.L25184M 0.26 TCGA-98-A53I-01 2 179473589 179473589 C T TTN Silent p.K17383K 0.28 TCGA-98-A53I-01 2 179479398 179479398 G A TTN Silent p.T16281T 0.25 TCGA-98-A53I-01 2 179480145 179480145 C G TTN Missense_Mutation p.W16176S 0.23 TCGA-98-A53I-01 2 179577441 179577442 - T TTN Frame_Shift_Ins p.T9104Nfs*17 0.15 TCGA-98-A53I-01 2 179587516 179587516 C T TTN Silent p.R7370R 0.22 TCGA-98-A53I-01 2 179589216 179589216 T C TTN Silent p.G6962G 0.29 TCGA-98-A53I-01 2 179714863 179714863 A - CCDC141 Frame_Shift_Del p.I1090Mfs*4 0.18 TCGA-98-A53I-01 2 190924946 190924946 T G MSTN Missense_Mutation p.N197H 0.29 tolerated(0.12) benign(0.005) TCGA-98-A53I-01 2 191301440 191301440 C T MFSD6 Nonsense_Mutation p.Q229* 0.24 TCGA-98-A53I-01 2 196581412 196581412 C G SLC39A10 Missense_Mutation p.T583R 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-98-A53I-01 2 201725886 201725886 T A CLK1 Intron 0.28 TCGA-98-A53I-01 2 207452838 207452838 C A ADAM23 Nonsense_Mutation p.C604* 0.21 TCGA-98-A53I-01 2 211539653 211539653 G A CPS1 Missense_Mutation p.V1383M 0.28 deleterious(0.03) possibly_damaging(0.652) TCGA-98-A53I-01 2 212251606 212251606 C T ERBB4 Missense_Mutation p.M1151I 0.27 tolerated(0.25) benign(0.021) TCGA-98-A53I-01 2 220501488 220501488 C T SLC4A3 Silent p.A836A 0.21 TCGA-98-A53I-01 2 225750871 225750871 C T DOCK10 Missense_Mutation p.G174D 0.08 deleterious(0.03) possibly_damaging(0.721) TCGA-98-A53I-01 2 228563730 228563730 G A SLC19A3 Missense_Mutation p.T234I 0.16 tolerated(0.22) benign(0.046) TCGA-98-A53I-01 2 235951875 235951875 A G SH3BP4 Missense_Mutation p.Q821R 0.12 tolerated(0.38) possibly_damaging(0.893) TCGA-98-A53I-01 2 238303432 238303432 A G COL6A3 Silent p.D169D 0.30 TCGA-98-A53I-01 2 27319622 27319622 G T KHK Missense_Mutation p.D124Y 0.16 deleterious(0) probably_damaging(0.989) TCGA-98-A53I-01 2 27565054 27565054 G A GTF3C2 Silent p.L206L 0.12 TCGA-98-A53I-01 2 29063502 29063502 T A SPDYA Intron 0.23 TCGA-98-A53I-01 2 45235956 45235956 C A SIX2 Silent p.L98L 0.19 TCGA-98-A53I-01 2 46386869 46386869 A G PRKCE Missense_Mutation p.K682R 0.24 tolerated(0.33) benign(0.005) TCGA-98-A53I-01 2 48914749 48914749 C T LHCGR 3'UTR 0.24 TCGA-98-A53I-01 2 48915635 48915635 T A LHCGR Missense_Mutation p.Q434L 0.15 deleterious(0) probably_damaging(0.995) TCGA-98-A53I-01 2 55561821 55561821 A G CCDC88A Silent p.S712S 0.10 TCGA-98-A53I-01 2 60987276 60987276 G T PAPOLG Missense_Mutation p.V9L 0.21 tolerated(0.72) benign(0.001) TCGA-98-A53I-01 2 69172558 69172558 G C GKN2 Missense_Mutation p.A166G 0.16 deleterious(0.01) benign(0.368) TCGA-98-A53I-01 2 79312407 79312407 A T REG1B Missense_Mutation p.F146I 0.16 deleterious(0.02) benign(0.039) TCGA-98-A53I-01 2 79314009 79314009 C A REG1B Nonsense_Mutation p.E38* 0.21 TCGA-98-A53I-01 2 80136776 80136776 G T CTNNA2 Silent p.L303L 0.19 TCGA-98-A53I-01 2 80816537 80816537 G T CTNNA2 Missense_Mutation p.D706Y 0.18 deleterious(0) probably_damaging(0.992) TCGA-98-A53I-01 2 88407929 88407929 C A SMYD1 Silent p.A395A 0.31 TCGA-98-A53I-01 2 89309677 89309677 A T IGKV1-9 Silent p.I51I 0.22 TCGA-98-A53I-01 2 9658067 9658067 G C ADAM17 Missense_Mutation p.T385R 0.06 deleterious(0) probably_damaging(0.999) TCGA-98-A53I-01 2 96780614 96780614 G C ADRA2B Missense_Mutation p.I425M 0.21 deleterious(0) possibly_damaging(0.805) TCGA-98-A53I-01 2 97024878 97024878 C T NCAPH Missense_Mutation p.T435I 0.28 tolerated(0.19) benign(0.279) TCGA-98-A53I-01 3 101038566 101038566 G A IMPG2 Silent p.L66L 0.17 TCGA-98-A53I-01 3 108557802 108557802 G T TRAT1 Missense_Mutation p.S47I 0.18 deleterious(0) benign(0.108) TCGA-98-A53I-01 3 108572524 108572524 C T TRAT1 Missense_Mutation p.R121C 0.15 tolerated(0.24) benign(0.016) TCGA-98-A53I-01 3 109049502 109049502 G A DPPA4 Missense_Mutation p.T183I 0.16 deleterious(0.01) benign(0.4) TCGA-98-A53I-01 3 113675186 113675186 G T ZDHHC23 Missense_Mutation p.W291C 0.26 deleterious(0.02) probably_damaging(1) TCGA-98-A53I-01 3 113775364 113775364 T C KIAA1407 5'UTR 0.17 TCGA-98-A53I-01 3 120363286 120363286 G T HGD Silent p.A218A 0.38 TCGA-98-A53I-01 3 123699340 123699340 C A ROPN1 5'UTR 0.34 TCGA-98-A53I-01 3 127399467 127399467 G A ABTB1 3'UTR 0.17 TCGA-98-A53I-01 3 12858170 12858170 C - CAND2 Frame_Shift_Del p.T581Lfs*7 0.24 TCGA-98-A53I-01 3 129168727 129168727 G A IFT122 Missense_Mutation p.A19T 0.14 tolerated(0.09) benign(0.147) TCGA-98-A53I-01 3 129325168 129325168 G C PLXND1 Missense_Mutation p.H105Q 0.39 deleterious(0.05) probably_damaging(0.936) TCGA-98-A53I-01 3 133339163 133339163 C T TOPBP1 Silent p.E1069E 0.09 TCGA-98-A53I-01 3 134323108 134323108 G T KY Silent p.L433L 0.12 TCGA-98-A53I-01 3 138669439 138669439 C T C3orf72 3'UTR 0.17 TCGA-98-A53I-01 3 142423304 142423304 G T PLS1 Splice_Site p.X502_splice 0.17 TCGA-98-A53I-01 3 147128230 147128230 G C ZIC1 Missense_Mutation p.A111P 0.30 tolerated(0.23) benign(0.221) TCGA-98-A53I-01 3 148545790 148545790 G T CPB1 Nonsense_Mutation p.E25* 0.30 TCGA-98-A53I-01 3 150264455 150264455 A G SERP1 5'UTR 0.25 TCGA-98-A53I-01 3 150906156 150906156 G A MED12L Missense_Mutation p.E548K 0.35 tolerated(0.05) probably_damaging(0.994) TCGA-98-A53I-01 3 150916979 150916979 C A GPR171 Silent p.L65L 0.31 TCGA-98-A53I-01 3 158546810 158546810 C T MFSD1 3'UTR 0.13 TCGA-98-A53I-01 3 160149549 160149549 T G SMC4 Missense_Mutation p.L1078R 0.07 tolerated(0.07) benign(0.063) TCGA-98-A53I-01 3 160285872 160285872 C T KPNA4 5'Flank 0.35 TCGA-98-A53I-01 3 164907436 164907436 G T SLITRK3 Silent p.R395R 0.15 TCGA-98-A53I-01 3 169540330 169540330 C G LRRIQ4 Missense_Mutation p.I207M 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-98-A53I-01 3 170928962 170928962 A T TNIK Silent p.A83A 0.17 TCGA-98-A53I-01 3 172165696 172165696 C T GHSR Missense_Mutation p.V170M 0.14 deleterious(0.01) possibly_damaging(0.726) TCGA-98-A53I-01 3 172538089 172538089 G C ECT2 3'UTR 0.32 TCGA-98-A53I-01 3 179051108 179051108 C T ZNF639 Missense_Mutation p.S119L 0.11 tolerated(0.39) benign(0.224) TCGA-98-A53I-01 3 184100448 184100448 G C CHRD Missense_Mutation p.E290Q 0.08 tolerated(0.09) possibly_damaging(0.901) TCGA-98-A53I-01 3 189612187 189612187 C T TP63 Missense_Mutation p.R647C 0.13 deleterious(0) probably_damaging(0.993) TCGA-98-A53I-01 3 193158391 193158391 A T ATP13A4 Silent p.S825S 0.06 TCGA-98-A53I-01 3 193207527 193207527 G T ATP13A4 Missense_Mutation p.L244I 0.41 tolerated(0.53) possibly_damaging(0.876) TCGA-98-A53I-01 3 26751659 26751660 AC - LRRC3B Frame_Shift_Del p.T166Sfs*7 0.32 TCGA-98-A53I-01 3 3084848 3084848 G T CNTN4 Splice_Site p.X900_splice 0.36 TCGA-98-A53I-01 3 38674744 38674744 C G SCN5A Missense_Mutation p.E19Q 0.28 tolerated(0.06) probably_damaging(0.998) TCGA-98-A53I-01 3 42728059 42728059 C A KLHL40 Missense_Mutation p.Q317K 0.38 tolerated(1) benign(0.001) TCGA-98-A53I-01 3 44673607 44673607 C G ZNF197 Silent p.A187A 0.27 TCGA-98-A53I-01 3 45978036 45978036 C G FYCO1 Splice_Site p.X1315_splice 0.33 TCGA-98-A53I-01 3 45988111 45988111 G T CXCR6 Silent p.L46L 0.37 TCGA-98-A53I-01 3 46307559 46307559 G T CCR3 Missense_Mutation p.V325F 0.32 deleterious(0) probably_damaging(0.92) TCGA-98-A53I-01 3 46450715 46450715 G T CCRL2 3'UTR 0.33 TCGA-98-A53I-01 3 46450759 46450759 G C CCRL2 3'UTR 0.38 TCGA-98-A53I-01 3 71026828 71026828 C G FOXP1 Missense_Mutation p.R467T 0.39 deleterious(0) probably_damaging(0.999) TCGA-98-A53I-01 3 7494481 7494481 T A GRM7 Missense_Mutation p.N454K 0.23 tolerated(0.29) benign(0.171) TCGA-98-A53I-01 3 93611840 93611840 C G PROS1 Missense_Mutation p.K364N 0.12 deleterious(0.01) possibly_damaging(0.483) TCGA-98-A53I-01 4 114277642 114277642 C T ANK2 Missense_Mutation p.S2623F 0.33 possibly_damaging(0.642) TCGA-98-A53I-01 4 122071257 122071257 C A TNIP3 Splice_Site p.X280_splice 0.17 TCGA-98-A53I-01 4 158142929 158142929 G T GRIA2 Missense_Mutation p.V67L 0.36 tolerated(0.16) benign(0.001) TCGA-98-A53I-01 4 175636678 175636678 G T GLRA3 Missense_Mutation p.P179T 0.30 deleterious(0) probably_damaging(1) TCGA-98-A53I-01 4 186318400 186318400 G A ANKRD37 Missense_Mutation p.G42S 0.40 deleterious(0) probably_damaging(0.988) TCGA-98-A53I-01 4 25160614 25160614 C T SEPSECS Missense_Mutation p.G77E 0.26 deleterious(0) probably_damaging(0.992) TCGA-98-A53I-01 4 46099363 46099363 A - GABRG1 Frame_Shift_Del p.D37Ifs*11 0.28 TCGA-98-A53I-01 4 47645110 47645110 A T CORIN Intron 0.30 TCGA-98-A53I-01 4 65145720 65145720 C A TECRL 3'UTR 0.39 TCGA-98-A53I-01 4 70074178 70074178 C A UGT2B11 Missense_Mutation p.S298I 0.29 deleterious(0) probably_damaging(0.996) TCGA-98-A53I-01 4 85905 85905 G C Z95704.2 RNA 0.23 TCGA-98-A53I-01 5 115335601 115335601 T A AQPEP Splice_Site p.X505_splice 0.19 TCGA-98-A53I-01 5 123984031 123984031 C T ZNF608 Silent p.A682A 0.10 TCGA-98-A53I-01 5 132039214 132039214 T A KIF3A Missense_Mutation p.E442D 0.13 tolerated(0.06) benign(0.045) TCGA-98-A53I-01 5 134164492 134164492 A G DDX46 3'UTR 0.24 TCGA-98-A53I-01 5 137734049 137734049 A G KDM3B Missense_Mutation p.E1005G 0.24 deleterious(0) probably_damaging(0.999) TCGA-98-A53I-01 5 13792252 13792252 C A DNAH5 Missense_Mutation p.V2767L 0.12 benign(0.299) TCGA-98-A53I-01 5 139740525 139740525 A G SLC4A9 Missense_Mutation p.D144G 0.24 deleterious(0) probably_damaging(1) TCGA-98-A53I-01 5 140552694 140552694 A T PCDHB7 Missense_Mutation p.E93V 0.20 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-98-A53I-01 5 140626272 140626272 G A PCDHB15 Missense_Mutation p.G376R 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.684) TCGA-98-A53I-01 5 140772672 140772672 C A PCDHGA8 Missense_Mutation p.Q98K 0.22 deleterious_low_confidence(0.04) benign(0.209) TCGA-98-A53I-01 5 150028259 150028259 G C SYNPO Missense_Mutation p.G385A 0.21 tolerated(0.11) benign(0.039) TCGA-98-A53I-01 5 154396377 154396377 G T KIF4B Missense_Mutation p.E986D 0.30 tolerated(0.06) probably_damaging(0.948) TCGA-98-A53I-01 5 15936592 15936592 G T FBXL7 Missense_Mutation p.R258L 0.31 tolerated(0.31) benign(0.103) TCGA-98-A53I-01 5 161116786 161116786 G T GABRA6 Splice_Site p.X225_splice 0.09 TCGA-98-A53I-01 5 16177968 16177968 C A MARCH11 Missense_Mutation p.R187L 0.15 tolerated(0.08) probably_damaging(0.998) TCGA-98-A53I-01 5 162945383 162945383 G T MAT2B 3'UTR 0.26 TCGA-98-A53I-01 5 26903754 26903754 C T CDH9 Missense_Mutation p.V331I 0.40 tolerated(0.24) benign(0.01) TCGA-98-A53I-01 5 36035951 36035951 T C UGT3A2 Missense_Mutation p.Y474C 0.30 tolerated(0.09) probably_damaging(0.95) TCGA-98-A53I-01 5 36136528 36136528 A G LMBRD2 Silent p.P210P 0.16 TCGA-98-A53I-01 5 38933325 38933325 G A OSMR Missense_Mutation p.E907K 0.25 deleterious(0.02) probably_damaging(0.931) TCGA-98-A53I-01 5 40853627 40853627 C T CARD6 Silent p.S731S 0.47 TCGA-98-A53I-01 5 44812066 44812066 G A MRPS30 Missense_Mutation p.C266Y 0.41 tolerated(1) benign(0.055) TCGA-98-A53I-01 5 54618254 54618254 G A SKIV2L2 Silent p.K78K 0.25 TCGA-98-A53I-01 5 5463182 5463182 A T KIAA0947 Missense_Mutation p.L1245F 0.28 deleterious(0.01) probably_damaging(0.985) TCGA-98-A53I-01 5 64748549 64748549 C A ADAMTS6 Missense_Mutation p.L276F 0.20 deleterious(0) probably_damaging(0.992) TCGA-98-A53I-01 5 66460782 66460782 C T MAST4 Silent p.S1925S 0.15 TCGA-98-A53I-01 5 66478964 66478964 C T CD180 Silent p.Q569Q 0.20 TCGA-98-A53I-01 5 70936850 70936850 T A MCCC2 Missense_Mutation p.D340E 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-98-A53I-01 5 74646613 74646613 G C HMGCR Splice_Site p.X261_splice 0.20 TCGA-98-A53I-01 5 7757630 7757630 C A ADCY2 Silent p.R675R 0.16 TCGA-98-A53I-01 5 80643690 80643690 T A ACOT12 Missense_Mutation p.I186F 0.14 deleterious(0) possibly_damaging(0.707) TCGA-98-A53I-01 6 111493997 111493997 G A SLC16A10 Missense_Mutation p.G148D 0.32 deleterious(0) probably_damaging(1) TCGA-98-A53I-01 6 133044143 133044143 G C VNN3 3'UTR 0.40 TCGA-98-A53I-01 6 152688404 152688404 G A SYNE1 Silent p.C3307C 0.31 TCGA-98-A53I-01 6 22294815 22294815 T A PRL Splice_Site p.X10_splice 0.41 TCGA-98-A53I-01 6 28876617 28876617 T C TRIM27 Missense_Mutation p.E296G 0.33 tolerated(0.38) benign(0.006) TCGA-98-A53I-01 6 39869720 39869720 G A DAAM2 Silent p.K1038K 0.16 TCGA-98-A53I-01 6 44081686 44081686 T C MRPL14 Missense_Mutation p.N111S 0.43 tolerated(0.09) benign(0.302) TCGA-98-A53I-01 6 51921755 51921755 C A PKHD1 Missense_Mutation p.G512V 0.32 deleterious(0) probably_damaging(0.912) TCGA-98-A53I-01 6 53767493 53767493 T C LRRC1 Missense_Mutation p.V285A 0.30 deleterious(0) benign(0.142) TCGA-98-A53I-01 6 56350115 56350115 G A DST Missense_Mutation p.H4445Y 0.23 probably_damaging(0.999) TCGA-98-A53I-01 6 57398262 57398262 A T PRIM2 Missense_Mutation p.Q322L 0.10 deleterious(0) probably_damaging(0.948) TCGA-98-A53I-01 6 69943200 69943200 G T BAI3 Silent p.T833T 0.48 TCGA-98-A53I-01 6 75816175 75816175 A G COL12A1 Missense_Mutation p.V2713A 0.11 benign(0.338) TCGA-98-A53I-01 6 76660368 76660368 G A IMPG1 Silent p.L579L 0.54 TCGA-98-A53I-01 6 78171968 78171968 G T HTR1B Missense_Mutation p.R385S 0.45 tolerated(0.06) benign(0.011) TCGA-98-A53I-01 6 79912075 79912075 G C HMGN3 Missense_Mutation p.A60G 0.12 tolerated(0.05) probably_damaging(0.918) TCGA-98-A53I-01 6 90448117 90448117 G A MDN1 Missense_Mutation p.R1551C 0.10 possibly_damaging(0.836) TCGA-98-A53I-01 7 100551937 100551937 T A MUC3A Missense_Mutation p.F230I 0.04 deleterious(0.02) possibly_damaging(0.587) TCGA-98-A53I-01 7 100852231 100852231 G A PLOD3 Missense_Mutation p.P564L 0.26 deleterious(0) possibly_damaging(0.723) TCGA-98-A53I-01 7 105908921 105908921 T A NAMPT Silent p.A244A 0.25 TCGA-98-A53I-01 7 107732112 107732112 C T LAMB4 Missense_Mutation p.E554K 0.30 deleterious(0) probably_damaging(0.999) TCGA-98-A53I-01 7 11415486 11415486 G T THSD7A Missense_Mutation p.Q1637K 0.26 tolerated(0.09) benign(0.2) TCGA-98-A53I-01 7 11521584 11521584 G T THSD7A Nonsense_Mutation p.C616* 0.31 TCGA-98-A53I-01 7 117431426 117431426 G A CTTNBP2 Silent p.S608S 0.19 TCGA-98-A53I-01 7 122339017 122339017 C T RNF133 5'UTR 0.23 TCGA-98-A53I-01 7 126542621 126542621 C - GRM8 Frame_Shift_Del p.N378Tfs*4 0.20 TCGA-98-A53I-01 7 127669181 127669181 C G LRRC4 Missense_Mutation p.A505P 0.24 tolerated(0.18) benign(0.008) TCGA-98-A53I-01 7 129297263 129297263 G T NRF1 Silent p.V24V 0.33 TCGA-98-A53I-01 7 130138010 130138010 G A MEST Missense_Mutation p.A124T 0.26 deleterious(0) probably_damaging(0.995) TCGA-98-A53I-01 7 137600598 137600598 C G CREB3L2 Silent p.L160L 0.09 TCGA-98-A53I-01 7 142032456 142032456 C G TRBV7-1 Silent p.S92S 0.29 TCGA-98-A53I-01 7 142131583 142131583 G A TRBV5-6 Silent p.L58L 0.18 TCGA-98-A53I-01 7 142247108 142247108 G T TRBV5-3 5'Flank 0.23 TCGA-98-A53I-01 7 142510305 142510305 T C TRBV30 Missense_Mutation p.S101G 0.21 tolerated(0.39) benign(0.011) TCGA-98-A53I-01 7 146536812 146536812 G T CNTNAP2 Missense_Mutation p.G73V 0.23 deleterious(0) probably_damaging(1) TCGA-98-A53I-01 7 148516743 148516743 T C EZH2 Missense_Mutation p.N315S 0.27 tolerated(0.42) possibly_damaging(0.829) TCGA-98-A53I-01 7 154863213 154863213 G C HTR5A Missense_Mutation p.V202L 0.23 deleterious(0.01) possibly_damaging(0.802) TCGA-98-A53I-01 7 17833659 17833659 G C SNX13 3'UTR 0.32 TCGA-98-A53I-01 7 30054382 30054382 C A FKBP14 Missense_Mutation p.R202I 0.31 deleterious(0) probably_damaging(1) TCGA-98-A53I-01 7 44246984 44246984 C A YKT6 Intron 0.18 TCGA-98-A53I-01 7 51096465 51096465 C T COBL Silent p.V776V 0.22 TCGA-98-A53I-01 7 53103635 53103635 C T POM121L12 Missense_Mutation p.R91W 0.27 deleterious(0) probably_damaging(0.942) TCGA-98-A53I-01 7 53103866 53103866 G T POM121L12 Nonsense_Mutation p.E168* 0.22 TCGA-98-A53I-01 7 54610457 54610457 G A VSTM2A Missense_Mutation p.V12I 0.23 tolerated(0.36) benign(0.025) TCGA-98-A53I-01 7 55467784 55467784 C T LANCL2 Missense_Mutation p.S222L 0.19 tolerated(0.06) benign(0.16) TCGA-98-A53I-01 7 55863544 55863544 G T SEPT14 3'UTR 0.27 TCGA-98-A53I-01 7 57188100 57188100 G T ZNF479 Missense_Mutation p.T341N 0.22 tolerated(0.15) possibly_damaging(0.69) TCGA-98-A53I-01 7 6155031 6155031 C A USP42 Missense_Mutation p.H107N 0.26 deleterious(0.01) possibly_damaging(0.871) TCGA-98-A53I-01 7 6196608 6196608 G A USP42 Missense_Mutation p.G1289R 0.29 deleterious(0) probably_damaging(0.968) TCGA-98-A53I-01 7 62751983 62751983 A G ZNF733P RNA 0.24 TCGA-98-A53I-01 7 70800692 70800692 G T WBSCR17 Missense_Mutation p.R132L 0.32 deleterious(0) probably_damaging(0.972) TCGA-98-A53I-01 7 720351 720351 G A PRKAR1B Nonsense_Mutation p.Q64* 0.14 TCGA-98-A53I-01 7 8043595 8043595 C G GLCCI1 Missense_Mutation p.S172C 0.26 deleterious(0) probably_damaging(0.992) TCGA-98-A53I-01 7 86416107 86416107 C T GRM3 Silent p.F333F 0.30 TCGA-98-A53I-01 7 88965460 88965460 T C ZNF804B Missense_Mutation p.L1055S 0.27 tolerated(0.32) benign(0.015) TCGA-98-A53I-01 7 913108 913108 G T SUN1 3'UTR 0.31 TCGA-98-A53I-01 7 91726564 91726581 CTTGAAGGACAGCGACTA - AKAP9 In_Frame_Del p.L3431_L3436del 0.34 TCGA-98-A53I-01 7 92734548 92734548 C T SAMD9 Missense_Mutation p.R288K 0.15 deleterious(0.03) probably_damaging(0.997) TCGA-98-A53I-01 7 97766633 97766633 C T LMTK2 Missense_Mutation p.A37V 0.30 tolerated(0.17) benign(0.08) TCGA-98-A53I-01 8 110432868 110432868 T G PKHD1L1 Silent p.T882T 0.15 TCGA-98-A53I-01 8 110510913 110510913 T A PKHD1L1 Missense_Mutation p.F3581I 0.35 deleterious(0.05) probably_damaging(0.974) TCGA-98-A53I-01 8 113301749 113301749 G T CSMD3 Missense_Mutation p.P2998H 0.38 deleterious(0) probably_damaging(0.996) TCGA-98-A53I-01 8 113301750 113301750 G T CSMD3 Missense_Mutation p.P2998T 0.36 deleterious(0) probably_damaging(0.992) TCGA-98-A53I-01 8 113326149 113326149 C A CSMD3 Missense_Mutation p.R2561L 0.33 deleterious(0.01) benign(0.089) TCGA-98-A53I-01 8 113326210 113326210 T C CSMD3 Missense_Mutation p.N2541D 0.07 deleterious(0.04) benign(0.063) TCGA-98-A53I-01 8 134232862 134232862 T A WISP1 Missense_Mutation p.Y130N 0.14 deleterious(0) probably_damaging(0.965) TCGA-98-A53I-01 8 145735828 145735828 G T MFSD3 Silent p.V256V 0.17 TCGA-98-A53I-01 8 145735829 145735829 G C MFSD3 Missense_Mutation p.G257R 0.17 deleterious(0.02) probably_damaging(0.995) TCGA-98-A53I-01 8 16007807 16007807 A T MSR1 Silent p.L304L 0.14 TCGA-98-A53I-01 8 24813034 24813034 C A CTD-2168K21.2 5'Flank 0.31 TCGA-98-A53I-01 8 2800058 2800058 C T CSMD1 Missense_Mutation p.A3491T 0.31 probably_damaging(0.958) TCGA-98-A53I-01 8 30407074 30407074 A T RBPMS 3'Flank 0.21 TCGA-98-A53I-01 8 30703710 30703710 C T TEX15 Missense_Mutation p.G942R 0.25 tolerated(0.85) benign(0.016) TCGA-98-A53I-01 8 38205065 38205065 C T WHSC1L1 Missense_Mutation p.E209K 0.25 tolerated(0.26) possibly_damaging(0.507) TCGA-98-A53I-01 8 43197359 43197359 C A POTEA RNA 0.28 TCGA-98-A53I-01 8 64099334 64099334 G - YTHDF3 Frame_Shift_Del p.G255Afs*15 0.27 TCGA-98-A53I-01 8 67578602 67578602 T C VCPIP1 Missense_Mutation p.I198V 0.10 tolerated(0.53) benign(0.009) TCGA-98-A53I-01 8 69046304 69046304 A T PREX2 Silent p.T1259T 0.15 TCGA-98-A53I-01 8 72754688 72754688 C A MSC 3'UTR 0.32 TCGA-98-A53I-01 8 87125938 87125938 A G ATP6V0D2 Missense_Mutation p.D44G 0.29 deleterious(0.01) possibly_damaging(0.651) TCGA-98-A53I-01 8 88885083 88885083 C A DCAF4L2 Missense_Mutation p.G373W 0.09 deleterious(0.04) probably_damaging(0.959) TCGA-98-A53I-01 8 88885826 88885826 C A DCAF4L2 Missense_Mutation p.R125L 0.29 deleterious(0) probably_damaging(0.937) TCGA-98-A53I-01 9 101787264 101787264 G C COL15A1 Missense_Mutation p.G655R 0.48 deleterious(0) probably_damaging(1) TCGA-98-A53I-01 9 115959336 115959336 C A FKBP15 Missense_Mutation p.G247V 0.52 deleterious(0) probably_damaging(0.997) TCGA-98-A53I-01 9 117122266 117122266 C G AKNA Missense_Mutation p.S734T 0.34 tolerated(0.47) benign(0.051) TCGA-98-A53I-01 9 130676947 130676947 C A ST6GALNAC4 Silent p.V62V 0.64 TCGA-98-A53I-01 9 131198026 131198026 G T CERCAM Nonsense_Mutation p.E544* 0.56 TCGA-98-A53I-01 9 131392623 131392623 G C SPTAN1 Missense_Mutation p.G2244A 0.46 deleterious(0.01) benign(0.079) TCGA-98-A53I-01 9 139345721 139345721 T C SEC16A Missense_Mutation p.K2100R 0.13 tolerated(0.14) benign(0.081) TCGA-98-A53I-01 9 140846794 140846794 C A CACNA1B Missense_Mutation p.F345L 0.47 deleterious(0.03) benign(0.011) TCGA-98-A53I-01 9 21974730 21974730 C A CDKN2A Nonsense_Mutation p.E33* 0.47 TCGA-98-A53I-01 9 35853802 35853802 G T TMEM8B Nonsense_Mutation p.G462* 0.27 TCGA-98-A53I-01 9 35853803 35853803 G T TMEM8B Missense_Mutation p.G462V 0.26 deleterious_low_confidence(0.02) benign(0.254) TCGA-98-A53I-01 9 37711375 37711375 G T FRMPD1 Missense_Mutation p.V131F 0.17 deleterious(0) probably_damaging(0.989) TCGA-98-A53I-01 9 420564 420564 T C DOCK8 Missense_Mutation p.V1335A 0.34 deleterious(0.05) possibly_damaging(0.507) TCGA-98-A53I-01 9 73736310 73736310 G T TRPM3 5'UTR 0.52 TCGA-98-A53I-01 X 101818601 101818601 C T NXF4 RNA 0.59 TCGA-98-A53I-01 X 107823951 107823951 G A COL4A5 Missense_Mutation p.G292R 0.48 unknown(0) TCGA-98-A53I-01 X 123518584 123518584 G C TENM1 Missense_Mutation p.P2066R 0.39 deleterious(0) benign(0.122) TCGA-98-A53I-01 X 123630951 123630951 G A TENM1 Missense_Mutation p.P1204S 0.41 tolerated(0.94) benign(0.01) TCGA-98-A53I-01 X 134421624 134421624 T A ZNF75D Silent p.V326V 0.47 TCGA-98-A53I-01 X 135429011 135429011 C G GPR112 Nonsense_Mutation p.S1049* 0.44 TCGA-98-A53I-01 X 140984715 140984715 C T MAGEC3 Missense_Mutation p.P391S 0.50 tolerated(0.14) benign(0.29) TCGA-98-A53I-01 X 142718373 142718373 A G SLITRK4 Silent p.D184D 0.45 TCGA-98-A53I-01 X 151870029 151870029 G T MAGEA6 Missense_Mutation p.G240V 0.52 deleterious(0.01) probably_damaging(0.93) TCGA-98-A53I-01 X 151900571 151900571 T C MAGEA12 Missense_Mutation p.Y77C 0.14 tolerated(0.11) benign(0.008) TCGA-98-A53I-01 X 153592651 153592651 C T FLNA Silent p.K704K 0.55 TCGA-98-A53I-01 X 26212314 26212314 A C MAGEB6 Silent p.A117A 0.40 TCGA-98-A53I-01 X 32364111 32364111 C A DMD Missense_Mutation p.E1845D 0.48 benign(0.388) TCGA-98-A53I-01 X 49856788 49856788 G C CLCN5 Missense_Mutation p.R788P 0.39 deleterious(0.02) possibly_damaging(0.714) TCGA-98-A53I-01 X 53239726 53239726 G T KDM5C Nonsense_Mutation p.S539* 0.50 TCGA-98-A53I-01 X 65417586 65417586 C T HEPH Silent p.V575V 0.52 TCGA-98-A53I-01 X 69497988 69497988 C T ARR3 Missense_Mutation p.T256M 0.67 deleterious(0.04) benign(0.08) TCGA-98-A53I-01 X 76225903 76225903 C A MIR325 RNA 0.47 TCGA-98-A53I-01 X 79932451 79932451 C T BRWD3 Missense_Mutation p.R1689K 0.51 tolerated_low_confidence(0.11) unknown(0) TCGA-98-A53I-01 X 89177095 89177095 C A TGIF2LX Missense_Mutation p.A4D 0.47 deleterious_low_confidence(0) benign(0.179) TCGA-98-A53I-01 X 92926743 92926743 C G NAP1L3 3'UTR 0.56 TCGA-98-A53I-01 X 92927396 92927396 G T NAP1L3 Missense_Mutation p.P303H 0.53 tolerated(0.05) probably_damaging(0.988) TCGA-98-A53J-01 10 16528513 16528513 A T PTER Missense_Mutation p.I199F 0.39 deleterious(0.01) probably_damaging(0.918) TCGA-98-A53J-01 10 7679230 7679230 G C ITIH5 Missense_Mutation p.L205V 0.30 deleterious(0) possibly_damaging(0.841) TCGA-98-A53J-01 10 89717702 89717702 T - PTEN Frame_Shift_Del p.F243Sfs*13 0.29 TCGA-98-A53J-01 10 90342848 90342848 C A RNLS Missense_Mutation p.D34Y 0.27 deleterious(0) probably_damaging(0.998) TCGA-98-A53J-01 11 101347225 101347225 G T TRPC6 Silent p.G517G 0.12 TCGA-98-A53J-01 11 119185549 119185549 C A MCAM Missense_Mutation p.V132F 0.22 deleterious(0) probably_damaging(0.997) TCGA-98-A53J-01 11 16007840 16007840 C A SOX6 Missense_Mutation p.C678F 0.30 deleterious(0) probably_damaging(0.998) TCGA-98-A53J-01 11 16007841 16007841 A T SOX6 Missense_Mutation p.C678S 0.31 deleterious(0) probably_damaging(0.995) TCGA-98-A53J-01 11 47360895 47360895 C A MYBPC3 Nonsense_Mutation p.E710* 0.30 TCGA-98-A53J-01 11 48239154 48239154 G A OR4B1 Missense_Mutation p.E265K 0.18 tolerated(0.83) benign(0.098) TCGA-98-A53J-01 11 55339893 55339893 T A OR4C16 Missense_Mutation p.I97N 0.11 deleterious(0.02) possibly_damaging(0.463) TCGA-98-A53J-01 11 55339894 55339894 C A OR4C16 Silent p.I97I 0.12 TCGA-98-A53J-01 11 63663056 63663056 C T MARK2 Missense_Mutation p.A80V 0.27 deleterious(0) probably_damaging(0.993) TCGA-98-A53J-01 11 73106290 73106290 G A RELT Missense_Mutation p.R402H 0.11 tolerated_low_confidence(1) benign(0.001) TCGA-98-A53J-01 12 108169319 108169319 C T ASCL4 Silent p.L109L 0.44 TCGA-98-A53J-01 12 111786037 111786037 C A CUX2 Silent p.R1457R 0.39 TCGA-98-A53J-01 13 108861639 108861639 C T LIG4 Missense_Mutation p.E660K 0.15 tolerated(0.19) benign(0.037) TCGA-98-A53J-01 13 67802274 67802274 C A PCDH9 Missense_Mutation p.G100V 0.16 tolerated(0.16) probably_damaging(0.956) TCGA-98-A53J-01 13 67802275 67802275 C A PCDH9 Missense_Mutation p.G100C 0.18 tolerated(0.38) probably_damaging(0.988) TCGA-98-A53J-01 13 73649905 73649905 G C KLF5 Missense_Mutation p.E419Q 0.25 deleterious(0) probably_damaging(0.988) TCGA-98-A53J-01 14 36988327 36988327 G A NKX2-1 Missense_Mutation p.S109L 0.38 deleterious(0.02) possibly_damaging(0.56) TCGA-98-A53J-01 14 77255727 77255727 G A ANGEL1 Silent p.H619H 0.47 TCGA-98-A53J-01 15 63829324 63829324 T C USP3 Missense_Mutation p.C85R 0.12 deleterious(0) probably_damaging(0.977) TCGA-98-A53J-01 15 63941936 63941936 A G HERC1 Missense_Mutation p.Y3579H 0.38 possibly_damaging(0.526) TCGA-98-A53J-01 15 63941937 63941937 G A HERC1 Silent p.C3578C 0.38 TCGA-98-A53J-01 15 80191209 80191209 C T ST20 3'UTR 0.28 TCGA-98-A53J-01 15 81561936 81561936 G C IL16 Missense_Mutation p.G208R 0.16 deleterious(0.01) probably_damaging(0.913) TCGA-98-A53J-01 15 90167880 90167880 A C TICRR Missense_Mutation p.S1447R 0.18 tolerated(0.18) benign(0.009) TCGA-98-A53J-01 16 20043307 20043307 T A GPR139 Missense_Mutation p.N271I 0.27 deleterious(0) probably_damaging(0.999) TCGA-98-A53J-01 16 2106691 2106691 C T TSC2 Missense_Mutation p.P232L 0.28 deleterious(0) probably_damaging(1) TCGA-98-A53J-01 16 2326807 2326807 C T ABCA3 Splice_Site p.X1662_splice 0.18 TCGA-98-A53J-01 16 30976946 30976946 G A SETD1A Missense_Mutation p.D582N 0.10 benign(0.165) TCGA-98-A53J-01 16 3406878 3406878 G A OR2C1 Silent p.%3D 0.13 TCGA-98-A53J-01 16 48180272 48180272 C A ABCC12 Missense_Mutation p.A22S 0.25 tolerated(0.68) benign(0.001) TCGA-98-A53J-01 16 521387 521387 G A RAB11FIP3 Missense_Mutation p.E301K 0.21 deleterious(0) benign(0.078) TCGA-98-A53J-01 16 53691408 53691408 C A RPGRIP1L Missense_Mutation p.R513I 0.23 deleterious(0) probably_damaging(0.993) TCGA-98-A53J-01 16 67289706 67289706 G T SLC9A5 Missense_Mutation p.A262S 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-98-A53J-01 16 82132043 82132043 C A HSD17B2 3'UTR 0.10 TCGA-98-A53J-01 17 18087800 18087800 G C ALKBH5 Missense_Mutation p.E81D 0.30 deleterious(0.02) probably_damaging(0.91) TCGA-98-A53J-01 17 29556058 29556058 C A NF1 Missense_Mutation p.H809N 0.26 tolerated(0.31) benign(0) TCGA-98-A53J-01 17 42083409 42083409 C A NAGS Nonsense_Mutation p.S240* 0.39 TCGA-98-A53J-01 17 50235262 50235262 C A CA10 5'UTR 0.30 TCGA-98-A53J-01 17 5235409 5235409 G A RABEP1 Nonsense_Mutation p.W110* 0.12 TCGA-98-A53J-01 17 67148591 67148591 C A ABCA10 Nonsense_Mutation p.E1390* 0.29 TCGA-98-A53J-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.45 deleterious(0) probably_damaging(0.997) TCGA-98-A53J-01 18 13666643 13666643 G T FAM210A Missense_Mutation p.H219N 0.12 tolerated(0.31) benign(0.009) TCGA-98-A53J-01 18 74153382 74153382 C G ZNF516 Missense_Mutation p.E543D 0.25 tolerated(0.75) benign(0) TCGA-98-A53J-01 19 12060467 12060467 A C ZNF700 Missense_Mutation p.K543T 0.27 deleterious(0) possibly_damaging(0.634) TCGA-98-A53J-01 19 12784030 12784030 A C WDR83 Missense_Mutation p.K233T 0.25 tolerated(0.29) possibly_damaging(0.711) TCGA-98-A53J-01 19 17425160 17425160 C T DDA1 Missense_Mutation p.S33L 0.17 deleterious(0.04) possibly_damaging(0.821) TCGA-98-A53J-01 19 17683363 17683363 C T COLGALT1 Missense_Mutation p.L301F 0.09 deleterious(0.02) possibly_damaging(0.594) TCGA-98-A53J-01 19 19407867 19407867 C A SUGP1 Missense_Mutation p.D392Y 0.16 deleterious(0) possibly_damaging(0.759) TCGA-98-A53J-01 19 23299960 23299960 C A ZNF730 5'UTR 0.15 TCGA-98-A53J-01 19 35758816 35758816 T C LSR 3'UTR 0.33 TCGA-98-A53J-01 19 38948925 38948925 C G RYR1 Silent p.L720L 0.09 TCGA-98-A53J-01 19 39998515 39998515 G T DLL3 Silent p.G573G 0.43 TCGA-98-A53J-01 19 44564622 44564622 C T ZNF223 Silent p.F10F 0.13 TCGA-98-A53J-01 19 52658138 52658138 G A ZNF836 Missense_Mutation p.S933F 0.62 deleterious_low_confidence(0.02) possibly_damaging(0.831) TCGA-98-A53J-01 19 54214314 54214314 G T MIR524 RNA 0.54 TCGA-98-A53J-01 19 55592728 55592728 G A EPS8L1 Silent p.A214A 0.31 TCGA-98-A53J-01 19 5867434 5867434 C A FUT5 Silent p.A101A 0.22 TCGA-98-A53J-01 19 5923842 5923842 C G RANBP3 Missense_Mutation p.Q360H 0.23 tolerated(0.07) benign(0.078) TCGA-98-A53J-01 1 1139419 1139419 G A TNFRSF18 Intron 0.20 TCGA-98-A53J-01 1 156526324 156526324 C A IQGAP3 Splice_Site p.X430_splice 0.25 TCGA-98-A53J-01 1 159175329 159175329 G A DARC Missense_Mutation p.D36N 0.10 tolerated(0.36) benign(0.002) TCGA-98-A53J-01 1 175375396 175375396 C T TNR Missense_Mutation p.R152Q 0.11 deleterious(0) probably_damaging(0.91) TCGA-98-A53J-01 1 178834610 178834610 A G ANGPTL1 Missense_Mutation p.V101A 0.13 tolerated(0.6) benign(0.001) TCGA-98-A53J-01 1 183498082 183498082 C T SMG7 Silent p.T204T 0.30 TCGA-98-A53J-01 1 216496843 216496843 G - USH2A Frame_Shift_Del p.A508Efs*83 0.14 TCGA-98-A53J-01 1 247751819 247751819 G A OR2G2 Missense_Mutation p.R53H 0.22 tolerated(0.55) benign(0.002) TCGA-98-A53J-01 1 248637140 248637140 G A OR2T3 Silent p.L163L 0.13 TCGA-98-A53J-01 1 248737570 248737570 C T OR2T34 Silent p.L163L 0.06 TCGA-98-A53J-01 1 28595719 28595719 G A SESN2 Missense_Mutation p.R39Q 0.52 tolerated_low_confidence(0.21) benign(0.001) TCGA-98-A53J-01 1 31188122 31188122 G A MATN1 Silent p.A414A 0.42 TCGA-98-A53J-01 1 38079540 38079540 G A RSPO1 Missense_Mutation p.S154F 0.07 deleterious(0) probably_damaging(0.987) TCGA-98-A53J-01 20 13514775 13514775 C A TASP1 Missense_Mutation p.G230V 0.17 deleterious(0.04) benign(0.044) TCGA-98-A53J-01 20 44108639 44108639 G A WFDC2 Missense_Mutation p.R94Q 0.30 tolerated(0.73) benign(0.008) TCGA-98-A53J-01 20 60891976 60891976 C T LAMA5 Missense_Mutation p.A2539T 0.24 benign(0.186) TCGA-98-A53J-01 22 20073802 20073802 C A DGCR8 Silent p.R106R 0.23 TCGA-98-A53J-01 22 21834284 21834284 G C PI4KAP2 RNA 0.17 TCGA-98-A53J-01 22 22277356 22277356 T C PPM1F 3'UTR 0.26 TCGA-98-A53J-01 22 37332635 37332635 C T CSF2RB Silent p.F503F 0.33 TCGA-98-A53J-01 22 50715094 50715094 G T PLXNB2 Missense_Mutation p.D1767E 0.08 deleterious(0) probably_damaging(0.996) TCGA-98-A53J-01 2 109357123 109357123 C A RANBP2 Missense_Mutation p.L321I 0.24 deleterious(0) benign(0.048) TCGA-98-A53J-01 2 116535394 116535394 G C DPP10 Missense_Mutation p.G453R 0.25 tolerated(1) benign(0.012) TCGA-98-A53J-01 2 152349885 152349885 G A NEB Silent p.N8249N 0.14 TCGA-98-A53J-01 2 168067348 168067348 G A XIRP2 Silent p.R222R 0.22 TCGA-98-A53J-01 2 179414470 179414470 C T TTN Missense_Mutation p.R30660Q 0.26 TCGA-98-A53J-01 2 185802995 185802995 G A ZNF804A Missense_Mutation p.E958K 0.34 tolerated(0.09) benign(0.029) TCGA-98-A53J-01 2 185803043 185803043 G A ZNF804A Missense_Mutation p.E974K 0.27 deleterious(0) probably_damaging(0.956) TCGA-98-A53J-01 2 205983752 205983752 T C PARD3B Missense_Mutation p.V263A 0.25 tolerated(0.46) benign(0.002) TCGA-98-A53J-01 2 240984556 240984556 C T OR6B3 Missense_Mutation p.V312I 0.24 tolerated(0.26) benign(0.028) TCGA-98-A53J-01 2 242757534 242757534 C T NEU4 Silent p.H218H 0.14 TCGA-98-A53J-01 2 63605535 63605535 G A WDPCP Silent p.F578F 0.29 TCGA-98-A53J-01 2 75720308 75720308 C A EVA1A 3'UTR 0.21 TCGA-98-A53J-01 2 90139131 90139131 C T IGKV1D-16 Silent p.L9L 0.32 TCGA-98-A53J-01 3 105421170 105421170 T C CBLB Missense_Mutation p.H576R 0.14 tolerated_low_confidence(0.37) benign(0.007) TCGA-98-A53J-01 3 108572813 108572813 C A TRAT1 3'UTR 0.17 TCGA-98-A53J-01 3 124436188 124436188 C A KALRN Missense_Mutation p.L1094M 0.23 deleterious(0) probably_damaging(0.999) TCGA-98-A53J-01 3 186793627 186793627 A T ST6GAL1 3'UTR 0.18 TCGA-98-A53J-01 3 190345178 190345178 G T IL1RAP Missense_Mutation p.W281L 0.19 deleterious(0) probably_damaging(0.999) TCGA-98-A53J-01 3 195404641 195404641 T A SDHAP2 RNA 0.07 TCGA-98-A53J-01 3 42739039 42739039 C T HHATL Missense_Mutation p.D276N 0.39 tolerated(0.12) probably_damaging(0.955) TCGA-98-A53J-01 4 134071171 134071171 C T PCDH10 5'UTR 0.27 TCGA-98-A53J-01 4 141483412 141483412 G A UCP1 Silent p.Y248Y 0.42 TCGA-98-A53J-01 4 16504467 16504467 C T LDB2 Silent p.L307L 0.35 TCGA-98-A53J-01 4 73957475 73957475 G A ANKRD17 Missense_Mutation p.S1957F 0.30 benign(0.018) TCGA-98-A53J-01 5 137221845 137221845 C A MYOT Missense_Mutation p.P378Q 0.33 deleterious(0) probably_damaging(1) TCGA-98-A53J-01 5 137221847 137221847 A G MYOT Missense_Mutation p.K379E 0.33 deleterious(0.01) benign(0.273) TCGA-98-A53J-01 5 140811589 140811589 A T PCDHGA12 Silent p.T421T 0.25 TCGA-98-A53J-01 5 154250254 154250254 C T CNOT8 Silent p.L115L 0.25 TCGA-98-A53J-01 5 154255032 154255032 C T CNOT8 3'UTR 0.17 TCGA-98-A53J-01 5 159781948 159781948 C T C1QTNF2 Missense_Mutation p.R69H 0.38 tolerated_low_confidence(0.06) unknown(0) TCGA-98-A53J-01 5 167957514 167957514 G C FBLL1 Nonstop_Mutation p.*335Yext*26 0.11 TCGA-98-A53J-01 5 52097643 52097643 A C PELO Missense_Mutation p.Q376P 0.23 tolerated(0.27) unknown(0) TCGA-98-A53J-01 5 79025942 79025942 G T CMYA5 Missense_Mutation p.D452Y 0.23 benign(0.068) TCGA-98-A53J-01 5 82948399 82948399 C A HAPLN1 Missense_Mutation p.K115N 0.21 tolerated(0.06) benign(0.001) TCGA-98-A53J-01 6 131191166 131191166 G A EPB41L2 Missense_Mutation p.S715L 0.15 tolerated(0.25) benign(0.112) TCGA-98-A53J-01 6 142724958 142724958 G A GPR126 Missense_Mutation p.E659K 0.24 tolerated(0.1) benign(0.03) TCGA-98-A53J-01 6 142764593 142764593 G A GPR126 Missense_Mutation p.D1232N 0.29 deleterious(0) probably_damaging(0.999) TCGA-98-A53J-01 6 143075041 143075041 G A HIVEP2 Missense_Mutation p.P2182S 0.23 deleterious(0.03) probably_damaging(0.998) TCGA-98-A53J-01 6 149718820 149718820 A G TAB2 Missense_Mutation p.K562E 0.23 deleterious(0) probably_damaging(0.989) TCGA-98-A53J-01 6 157739843 157739843 C T TMEM242 Missense_Mutation p.A100T 0.16 tolerated(0.12) benign(0.081) TCGA-98-A53J-01 6 26092939 26092939 C T HFE Missense_Mutation p.H215Y 0.26 deleterious(0) possibly_damaging(0.699) TCGA-98-A53J-01 6 54212193 54212193 G A TINAG Silent p.Q259Q 0.41 TCGA-98-A53J-01 6 76018574 76018574 G A FILIP1 Missense_Mutation p.R1159C 0.23 deleterious(0) probably_damaging(1) TCGA-98-A53J-01 7 100803916 100803916 C T AP1S1 3'UTR 0.32 TCGA-98-A53J-01 7 127013756 127013756 G A ZNF800 Missense_Mutation p.S545L 0.11 deleterious(0) possibly_damaging(0.874) TCGA-98-A53J-01 7 142622670 142622670 C T TRPV5 Missense_Mutation p.R359H 0.22 tolerated(0.4) benign(0.006) TCGA-98-A53J-01 7 23545835 23545835 C T TRA2A Missense_Mutation p.G231D 0.25 tolerated(0.21) unknown(0) TCGA-98-A53J-01 7 5427544 5427544 G A TNRC18 Silent p.L637L 0.33 TCGA-98-A53J-01 7 63981703 63981703 G T ZNF680 Missense_Mutation p.L477I 0.19 deleterious(0.01) possibly_damaging(0.613) TCGA-98-A53J-01 7 64378049 64378049 G A ZNF273 Missense_Mutation p.V65M 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-98-A53J-01 8 110131558 110131558 C T TRHR Silent p.I357I 0.19 TCGA-98-A53J-01 8 131796029 131796029 T C ADCY8 Missense_Mutation p.H1059R 0.11 deleterious(0) benign(0.003) TCGA-98-A53J-01 8 144731987 144731987 A G ZNF623 5'UTR 0.23 TCGA-98-A53J-01 8 1728476 1728476 C T CLN8 Missense_Mutation p.H202Y 0.16 deleterious(0) probably_damaging(0.983) TCGA-98-A53J-01 9 103055197 103055197 G A INVS Silent p.G886G 0.20 TCGA-98-A53J-01 9 123919814 123919814 G A CNTRL Missense_Mutation p.E1478K 0.36 benign(0.2) TCGA-98-A53J-01 9 134151374 134151374 G A FAM78A Missense_Mutation p.R65W 0.30 deleterious(0) probably_damaging(0.999) TCGA-98-A53J-01 9 140707940 140707940 G T EHMT1 Silent p.V1046V 0.19 TCGA-98-A53J-01 9 21206410 21206410 G C IFNA10 3'UTR 0.30 TCGA-98-A53J-01 9 87342698 87342698 A G NTRK2 Missense_Mutation p.K328R 0.26 tolerated(0.45) benign(0.205) TCGA-98-A53J-01 X 125299763 125299763 G C DCAF12L2 Missense_Mutation p.R49G 0.57 deleterious(0.02) possibly_damaging(0.586) TCGA-98-A53J-01 X 136652139 136652139 T C ZIC3 Silent p.S438S 0.10 TCGA-98-A53J-01 X 138844144 138844144 G A ATP11C Silent p.H875H 0.62 TCGA-J1-A4AH-01 10 116418055 116418055 T C ABLIM1 5'UTR 0.31 TCGA-J1-A4AH-01 10 117849394 117849394 G T GFRA1 Missense_Mutation p.T352N 0.11 tolerated(1) benign(0.001) TCGA-J1-A4AH-01 10 122650259 122650259 G A WDR11 Missense_Mutation p.R792K 0.12 tolerated(0.52) benign(0.032) TCGA-J1-A4AH-01 10 135111563 135111563 G A TUBGCP2 Missense_Mutation p.S170L 0.20 tolerated(0.71) benign(0.012) TCGA-J1-A4AH-01 10 17085952 17085952 G T CUBN Missense_Mutation p.L1235M 0.14 tolerated(0.07) possibly_damaging(0.453) TCGA-J1-A4AH-01 10 52834511 52834511 G C PRKG1 Missense_Mutation p.R54P 0.25 tolerated(0.22) benign(0.002) TCGA-J1-A4AH-01 10 55581973 55581973 G T PCDH15 Missense_Mutation p.T1840K 0.13 deleterious_low_confidence(0.01) unknown(0) TCGA-J1-A4AH-01 11 100226930 100226930 G A CNTN5 Missense_Mutation p.M1094I 0.19 tolerated(0.7) benign(0) TCGA-J1-A4AH-01 11 111965649 111965649 C T SDHD Silent p.H145H 0.16 TCGA-J1-A4AH-01 11 113286218 113286218 G A DRD2 Silent p.L216L 0.19 TCGA-J1-A4AH-01 11 118366434 118366434 G C KMT2A Missense_Mutation p.A1795P 0.25 probably_damaging(0.999) TCGA-J1-A4AH-01 11 118366435 118366435 C T KMT2A Missense_Mutation p.A1795V 0.25 probably_damaging(0.993) TCGA-J1-A4AH-01 11 123900741 123900741 C T OR10G8 Missense_Mutation p.R138C 0.22 deleterious(0.01) benign(0.032) TCGA-J1-A4AH-01 11 35685300 35685300 C T TRIM44 Missense_Mutation p.T214I 0.32 deleterious(0) unknown(0) TCGA-J1-A4AH-01 11 55406108 55406108 A T OR4P4 Missense_Mutation p.Y92F 0.12 tolerated(0.23) benign(0.011) TCGA-J1-A4AH-01 11 55588007 55588007 C A OR5D18 Missense_Mutation p.T301K 0.14 deleterious(0.02) benign(0.013) TCGA-J1-A4AH-01 11 55904858 55904858 T A OR8J3 Missense_Mutation p.M113L 0.18 tolerated(0.19) benign(0) TCGA-J1-A4AH-01 11 57798724 57798724 T C OR6Q1 Silent p.D100D 0.16 TCGA-J1-A4AH-01 11 62299102 62299102 C T AHNAK Silent p.L929L 0.04 TCGA-J1-A4AH-01 11 76507019 76507019 T C TSKU Missense_Mutation p.L120P 0.26 deleterious(0) probably_damaging(1) TCGA-J1-A4AH-01 11 85346873 85346873 T C TMEM126B Intron 0.25 TCGA-J1-A4AH-01 12 109894088 109894088 A T KCTD10 Silent p.I186I 0.28 TCGA-J1-A4AH-01 12 110783890 110783890 C A ATP2A2 Silent p.L942L 0.26 TCGA-J1-A4AH-01 12 111885861 111885861 G C SH2B3 Missense_Mutation p.E495Q 0.26 tolerated(0.09) probably_damaging(0.962) TCGA-J1-A4AH-01 12 122657175 122657175 C A IL31 Missense_Mutation p.K93N 0.22 deleterious(0.01) possibly_damaging(0.725) TCGA-J1-A4AH-01 12 130184551 130184551 C T TMEM132D Missense_Mutation p.D258N 0.21 tolerated(0.12) benign(0.36) TCGA-J1-A4AH-01 12 30833521 30833521 G T IPO8 Missense_Mutation p.F178L 0.16 tolerated(0.89) benign(0.063) TCGA-J1-A4AH-01 12 32890064 32890064 G A DNM1L Missense_Mutation p.R522K 0.17 tolerated(0.61) benign(0.002) TCGA-J1-A4AH-01 12 57866446 57866446 G A ARHGAP9 Missense_Mutation p.R684C 0.16 deleterious(0) probably_damaging(0.935) TCGA-J1-A4AH-01 13 60667824 60667824 C A DIAPH3 Nonsense_Mutation p.E145* 0.10 TCGA-J1-A4AH-01 13 95724105 95724105 C T ABCC4 Missense_Mutation p.M1007I 0.40 deleterious(0) possibly_damaging(0.831) TCGA-J1-A4AH-01 14 105208220 105208220 G T ADSSL1 Missense_Mutation p.V320L 0.44 tolerated(0.18) probably_damaging(0.991) TCGA-J1-A4AH-01 14 106691723 106691723 G C IGHV3-21 Missense_Mutation p.Q101E 0.47 deleterious_low_confidence(0.04) benign(0.246) TCGA-J1-A4AH-01 14 19553768 19553768 G T POTEG Missense_Mutation p.G118C 0.05 deleterious(0) probably_damaging(0.954) TCGA-J1-A4AH-01 14 22133959 22133959 C G OR4E2 Missense_Mutation p.I221M 0.32 deleterious(0) probably_damaging(1) TCGA-J1-A4AH-01 14 22279893 22279893 G A TRAV9-1 Missense_Mutation p.G28S 0.39 deleterious(0.02) possibly_damaging(0.606) TCGA-J1-A4AH-01 14 24879186 24879186 G A NYNRIN Missense_Mutation p.G729D 0.16 tolerated_low_confidence(0.09) benign(0.033) TCGA-J1-A4AH-01 14 97018823 97018823 A G PAPOLA Missense_Mutation p.T510A 0.46 tolerated(0.94) benign(0.001) TCGA-J1-A4AH-01 15 22332577 22332577 C A RP11-69H14.6 RNA 0.18 TCGA-J1-A4AH-01 15 45007864 45007864 A G B2M Missense_Mutation p.H104R 0.46 deleterious(0) probably_damaging(0.947) TCGA-J1-A4AH-01 15 48787771 48787771 C G FBN1 Missense_Mutation p.E812Q 0.48 benign(0.01) TCGA-J1-A4AH-01 15 86822904 86822904 G A AGBL1 Missense_Mutation p.G658R 0.49 deleterious(0.05) benign(0.16) TCGA-J1-A4AH-01 15 89876437 89876437 C A POLG Missense_Mutation p.E183D 0.24 tolerated(0.1) benign(0.013) TCGA-J1-A4AH-01 15 90167212 90167212 C G TICRR Missense_Mutation p.S1224C 0.12 tolerated(0.19) benign(0.013) TCGA-J1-A4AH-01 15 90167285 90167285 C G TICRR Silent p.L1248L 0.11 TCGA-J1-A4AH-01 16 1551669 1551669 C G TELO2 Missense_Mutation p.S456C 0.14 tolerated(0.08) possibly_damaging(0.682) TCGA-J1-A4AH-01 16 19033051 19033051 C G TMC7 Silent p.L187L 0.24 TCGA-J1-A4AH-01 16 21190949 21190949 G C TMEM159 3'UTR 0.61 TCGA-J1-A4AH-01 16 2369698 2369698 C T ABCA3 Missense_Mutation p.D253N 0.15 deleterious(0) probably_damaging(0.991) TCGA-J1-A4AH-01 16 2807572 2807572 G C SRRM2 Missense_Mutation p.Q114H 0.24 unknown(0) TCGA-J1-A4AH-01 16 30723397 30723397 A C SRCAP Silent p.L578L 0.28 TCGA-J1-A4AH-01 16 30941661 30941661 G T FBXL19 Missense_Mutation p.V373L 0.19 tolerated(0.67) benign(0) TCGA-J1-A4AH-01 16 3335713 3335713 C T ZNF263 Missense_Mutation p.P201S 0.13 tolerated(0.93) benign(0.002) TCGA-J1-A4AH-01 16 46990777 46990777 T A DNAJA2 3'UTR 0.45 TCGA-J1-A4AH-01 16 56660732 56660732 A G MT1E Intron 0.38 TCGA-J1-A4AH-01 16 58031953 58031953 C T ZNF319 Missense_Mutation p.E73K 0.26 tolerated(0.06) benign(0.002) TCGA-J1-A4AH-01 16 68725664 68725664 G A CDH3 Missense_Mutation p.D613N 0.18 deleterious(0.02) benign(0.01) TCGA-J1-A4AH-01 16 69988237 69988237 G A CLEC18A Missense_Mutation p.D73N 0.34 tolerated(0.09) probably_damaging(0.981) TCGA-J1-A4AH-01 16 71605509 71605509 C T TAT Missense_Mutation p.M253I 0.14 tolerated(0.15) possibly_damaging(0.623) TCGA-J1-A4AH-01 16 84513551 84513551 C A TLDC1 Nonsense_Mutation p.E447* 0.31 TCGA-J1-A4AH-01 16 86575354 86575354 G A MTHFSD Silent p.V210V 0.47 TCGA-J1-A4AH-01 17 21826310 21826310 C A FAM27L RNA 0.38 TCGA-J1-A4AH-01 17 21826311 21826311 C A FAM27L RNA 0.39 TCGA-J1-A4AH-01 17 55023827 55023827 T C COIL Missense_Mutation p.I512V 0.20 tolerated(0.11) benign(0.133) TCGA-J1-A4AH-01 17 57158526 57158526 T C TRIM37 Missense_Mutation p.K142E 0.03 tolerated(0.15) benign(0.358) TCGA-J1-A4AH-01 17 7578455 7578455 C G TP53 Missense_Mutation p.A159P 0.46 deleterious(0) probably_damaging(0.991) TCGA-J1-A4AH-01 17 77809177 77809177 A G CBX4 Silent p.R88R 0.32 TCGA-J1-A4AH-01 17 8409756 8409756 C G MYH10 Missense_Mutation p.R1089T 0.54 probably_damaging(0.995) TCGA-J1-A4AH-01 18 29044343 29044343 C T DSG3 Silent p.V423V 0.21 TCGA-J1-A4AH-01 18 32409083 32409083 G A DTNA Intron 0.28 TCGA-J1-A4AH-01 19 12541730 12541730 C T ZNF443 Missense_Mutation p.G419E 0.13 deleterious(0.01) probably_damaging(0.98) TCGA-J1-A4AH-01 19 14627571 14627571 C G DNAJB1 Missense_Mutation p.D167H 0.15 deleterious(0) probably_damaging(0.955) TCGA-J1-A4AH-01 19 18092694 18092694 C T KCNN1 Silent p.D225D 0.23 TCGA-J1-A4AH-01 19 18099243 18099243 T C KCNN1 Missense_Mutation p.L360P 0.23 deleterious(0) probably_damaging(0.997) TCGA-J1-A4AH-01 19 2046398 2046398 C A MKNK2 Missense_Mutation p.R70L 0.24 deleterious(0) possibly_damaging(0.811) TCGA-J1-A4AH-01 19 31769343 31769343 G A TSHZ3 Silent p.F452F 0.21 TCGA-J1-A4AH-01 19 33088991 33088991 C T ANKRD27 3'UTR 0.17 TCGA-J1-A4AH-01 19 4054994 4054994 G A ZBTB7A Silent p.F79F 0.17 TCGA-J1-A4AH-01 19 41248565 41248565 G A C19orf54 Missense_Mutation p.P277S 0.32 tolerated(0.13) probably_damaging(0.959) TCGA-J1-A4AH-01 19 42827937 42827937 C T TMEM145 Missense_Mutation p.T466I 0.33 tolerated_low_confidence(0.21) benign(0.001) TCGA-J1-A4AH-01 19 4292632 4292632 C T TMIGD2 Silent p.P271P 0.25 TCGA-J1-A4AH-01 19 44058877 44058877 C A XRCC1 Missense_Mutation p.G112V 0.05 deleterious(0) probably_damaging(1) TCGA-J1-A4AH-01 19 47844983 47844983 G T C5AR2 Missense_Mutation p.W309C 0.19 tolerated(0.12) possibly_damaging(0.781) TCGA-J1-A4AH-01 19 53117229 53117229 T G ZNF83 Silent p.R197R 0.09 TCGA-J1-A4AH-01 19 54310847 54310847 C T NLRP12 Silent p.L715L 0.23 TCGA-J1-A4AH-01 19 55144187 55144187 G T LILRB1 Missense_Mutation p.D312Y 0.25 deleterious(0) probably_damaging(0.98) TCGA-J1-A4AH-01 19 56307582 56307582 C T NLRP11 Missense_Mutation p.E736K 0.14 tolerated(0.39) benign(0.001) TCGA-J1-A4AH-01 19 56369119 56369119 C - NLRP4 Frame_Shift_Del p.L121Yfs*31 0.23 TCGA-J1-A4AH-01 19 56515435 56515435 C T NLRP5 Missense_Mutation p.S139L 0.14 tolerated(0.05) benign(0.101) TCGA-J1-A4AH-01 19 57035936 57035936 G T ZNF471 Missense_Mutation p.C167F 0.19 tolerated(0.88) benign(0) TCGA-J1-A4AH-01 19 9062964 9062964 G C MUC16 Missense_Mutation p.S8161C 0.29 unknown(0) TCGA-J1-A4AH-01 1 111825303 111825303 C T CHIAP2 RNA 0.12 TCGA-J1-A4AH-01 1 111825304 111825304 C T CHIAP2 RNA 0.12 TCGA-J1-A4AH-01 1 113238042 113238042 T C MOV10 Missense_Mutation p.V542A 0.11 tolerated(0.51) benign(0.103) TCGA-J1-A4AH-01 1 113252888 113252888 G A PPM1J Missense_Mutation p.T472I 0.29 tolerated(0.29) benign(0) TCGA-J1-A4AH-01 1 149785105 149785105 G T HIST2H3D Silent p.P44P 0.20 TCGA-J1-A4AH-01 1 150469075 150469075 G A TARS2 Missense_Mutation p.E298K 0.31 tolerated(0.76) benign(0.044) TCGA-J1-A4AH-01 1 154471639 154471639 C T SHE Missense_Mutation p.G223R 0.09 deleterious(0.02) probably_damaging(0.951) TCGA-J1-A4AH-01 1 156552209 156552209 A G TTC24 Missense_Mutation p.K298R 0.23 tolerated(0.3) benign(0.133) TCGA-J1-A4AH-01 1 157650544 157650544 G T FCRL3 Missense_Mutation p.S658R 0.17 tolerated(0.08) benign(0.017) TCGA-J1-A4AH-01 1 158389850 158389850 G T OR10K2 Missense_Mutation p.S269R 0.18 deleterious(0.03) benign(0.019) TCGA-J1-A4AH-01 1 161140274 161140274 G C PPOX Missense_Mutation p.E355Q 0.12 tolerated(0.39) benign(0.135) TCGA-J1-A4AH-01 1 167741580 167741580 G A MPZL1 Nonsense_Mutation p.W109* 0.21 TCGA-J1-A4AH-01 1 190068061 190068061 C T BRINP3 Missense_Mutation p.C463Y 0.18 deleterious(0) probably_damaging(0.996) TCGA-J1-A4AH-01 1 197026236 197026236 C T F13B Missense_Mutation p.V360M 0.33 deleterious(0) probably_damaging(0.992) TCGA-J1-A4AH-01 1 197390149 197390149 C A CRB1 Missense_Mutation p.D397E 0.15 tolerated(0.13) possibly_damaging(0.865) TCGA-J1-A4AH-01 1 202733245 202733245 T C KDM5B Missense_Mutation p.E247G 0.06 deleterious(0.04) benign(0.049) TCGA-J1-A4AH-01 1 214788245 214788245 G A CENPF Missense_Mutation p.S78N 0.20 benign(0) TCGA-J1-A4AH-01 1 22176632 22176632 C T HSPG2 Missense_Mutation p.E2450K 0.24 probably_damaging(0.999) TCGA-J1-A4AH-01 1 247587244 247587244 C T NLRP3 Missense_Mutation p.R167C 0.27 deleterious(0) probably_damaging(0.999) TCGA-J1-A4AH-01 1 28315073 28315073 C G EYA3 Missense_Mutation p.E505Q 0.15 deleterious(0) possibly_damaging(0.857) TCGA-J1-A4AH-01 1 36360845 36360845 A - AGO1 Frame_Shift_Del p.K333Sfs*7 0.16 TCGA-J1-A4AH-01 1 45479006 45479006 G A UROD Missense_Mutation p.D86N 0.18 deleterious(0) probably_damaging(0.999) TCGA-J1-A4AH-01 1 46206723 46206723 G C IPP Missense_Mutation p.L192V 0.28 deleterious(0) probably_damaging(1) TCGA-J1-A4AH-01 1 67109288 67109288 G A SGIP1 Silent p.K115K 0.12 TCGA-J1-A4AH-01 1 67154869 67154869 C A SGIP1 Missense_Mutation p.P452T 0.25 tolerated(0.59) benign(0) TCGA-J1-A4AH-01 1 92515879 92515879 A G EPHX4 Missense_Mutation p.I204V 0.16 tolerated(0.83) benign(0.122) TCGA-J1-A4AH-01 1 99771429 99771429 T A LPPR4 Silent p.S385S 0.09 TCGA-J1-A4AH-01 20 33999832 33999832 T C UQCC1 5'UTR 0.14 TCGA-J1-A4AH-01 20 34065787 34065787 A C CEP250 Missense_Mutation p.K652T 0.36 benign(0.082) TCGA-J1-A4AH-01 20 49626707 49626707 G A KCNG1 Nonsense_Mutation p.Q57* 0.27 TCGA-J1-A4AH-01 20 60575259 60575259 G C TAF4 Nonsense_Mutation p.S903* 0.15 TCGA-J1-A4AH-01 21 17199451 17199451 C T USP25 Missense_Mutation p.T541M 0.09 deleterious(0.01) possibly_damaging(0.832) TCGA-J1-A4AH-01 21 19726150 19726150 A C TMPRSS15 Missense_Mutation p.I304R 0.34 deleterious(0) probably_damaging(0.948) TCGA-J1-A4AH-01 21 41539196 41539196 C T DSCAM Silent p.Q989Q 0.13 TCGA-J1-A4AH-01 21 42080556 42080556 G A DSCAM Missense_Mutation p.T62M 0.08 deleterious(0.02) probably_damaging(0.996) TCGA-J1-A4AH-01 22 19438171 19438171 C T UFD1L 3'UTR 0.11 TCGA-J1-A4AH-01 22 22550544 22550544 G C IGLV6-57 Missense_Mutation p.R74T 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-J1-A4AH-01 22 33712223 33712223 C A LARGE Missense_Mutation p.Q433H 0.18 deleterious(0.04) benign(0.423) TCGA-J1-A4AH-01 22 38201952 38201952 C T H1F0 Missense_Mutation p.P134L 0.11 deleterious(0.01) unknown(0) TCGA-J1-A4AH-01 22 41568569 41568569 G A EP300 Missense_Mutation p.D1507N 0.10 probably_damaging(1) TCGA-J1-A4AH-01 22 46125304 46125304 G C ATXN10 Splice_Site p.X243_splice 0.19 TCGA-J1-A4AH-01 22 50659709 50659709 C G TUBGCP6 Missense_Mutation p.G1027R 0.20 tolerated(0.1) benign(0.011) TCGA-J1-A4AH-01 2 100055218 100055218 T C REV1 Missense_Mutation p.Y353C 0.20 deleterious(0) probably_damaging(0.996) TCGA-J1-A4AH-01 2 130832636 130832636 G T POTEF Silent p.V803V 0.33 TCGA-J1-A4AH-01 2 178096503 178096503 T C NFE2L2 Silent p.T276T 0.38 TCGA-J1-A4AH-01 2 178098810 178098810 C T NFE2L2 Missense_Mutation p.E79K 0.21 deleterious(0) probably_damaging(0.999) TCGA-J1-A4AH-01 2 196664089 196664089 T C DNAH7 Silent p.A3428A 0.34 TCGA-J1-A4AH-01 2 217059643 217059654 TGGAATTACTCT - XRCC5 In_Frame_Del p.D681_L685delinsE 0.28 TCGA-J1-A4AH-01 2 230632344 230632344 A C TRIP12 Missense_Mutation p.S1969A 0.10 deleterious(0) probably_damaging(0.987) TCGA-J1-A4AH-01 2 241813435 241813435 C T AGXT Silent p.N212N 0.06 TCGA-J1-A4AH-01 2 27479383 27479383 G A SLC30A3 Missense_Mutation p.P297S 0.17 tolerated(0.08) probably_damaging(0.996) TCGA-J1-A4AH-01 2 27715177 27715177 G T FNDC4 3'UTR 0.44 TCGA-J1-A4AH-01 2 31602765 31602765 G C XDH Missense_Mutation p.L404V 0.49 tolerated(0.19) benign(0.35) TCGA-J1-A4AH-01 2 31602811 31602811 G C XDH Silent p.T388T 0.47 TCGA-J1-A4AH-01 2 31604562 31604562 G A XDH Missense_Mutation p.P357S 0.45 tolerated(0.18) probably_damaging(0.989) TCGA-J1-A4AH-01 2 54137260 54137260 T G PSME4 Missense_Mutation p.S842R 0.24 deleterious(0.01) benign(0.058) TCGA-J1-A4AH-01 2 70088417 70088417 C G GMCL1 Silent p.L360L 0.20 TCGA-J1-A4AH-01 2 7035999 7035999 T G RSAD2 Missense_Mutation p.F338V 0.38 deleterious(0) probably_damaging(0.987) TCGA-J1-A4AH-01 2 71576830 71576830 C T ZNF638 Missense_Mutation p.S249F 0.13 deleterious(0) probably_damaging(0.999) TCGA-J1-A4AH-01 2 74438420 74438420 T A MTHFD2 Splice_Site p.X255_splice 0.50 TCGA-J1-A4AH-01 2 9517089 9517089 C T ASAP2 Missense_Mutation p.S600F 0.36 deleterious(0) probably_damaging(0.999) TCGA-J1-A4AH-01 2 99012803 99012803 G C CNGA3 Silent p.L390L 0.30 TCGA-J1-A4AH-01 3 108203941 108203941 C T MYH15 Missense_Mutation p.E391K 0.11 deleterious(0) probably_damaging(0.999) TCGA-J1-A4AH-01 3 111325764 111325764 T G CD96 Intron 0.31 TCGA-J1-A4AH-01 3 113327004 113327004 A G SIDT1 Missense_Mutation p.I514M 0.21 deleterious(0) probably_damaging(0.985) TCGA-J1-A4AH-01 3 122003779 122003779 C T CASR Missense_Mutation p.T1003M 0.16 tolerated_low_confidence(0.06) benign(0.002) TCGA-J1-A4AH-01 3 125725815 125725815 G T SLC41A3 Intron 0.29 TCGA-J1-A4AH-01 3 128628990 128628990 G A ACAD9 Missense_Mutation p.E564K 0.09 deleterious(0) probably_damaging(0.931) TCGA-J1-A4AH-01 3 7620921 7620921 G A GRM7 Silent p.K776K 0.13 TCGA-J1-A4AH-01 3 88040863 88040863 T C HTR1F Missense_Mutation p.C322R 0.29 deleterious(0) benign(0.179) TCGA-J1-A4AH-01 3 93646165 93646165 C A PROS1 Nonsense_Mutation p.E55* 0.11 TCGA-J1-A4AH-01 3 99649854 99649854 C G FILIP1L Missense_Mutation p.R4T 0.10 deleterious(0) benign(0.201) TCGA-J1-A4AH-01 4 119653920 119653920 G C SEC24D Missense_Mutation p.Q882E 0.19 tolerated(0.33) probably_damaging(0.999) TCGA-J1-A4AH-01 4 143067110 143067110 T C INPP4B Missense_Mutation p.I535V 0.22 tolerated(0.49) benign(0.004) TCGA-J1-A4AH-01 4 147628701 147628701 C T TTC29 Missense_Mutation p.E445K 0.24 tolerated(0.34) benign(0.001) TCGA-J1-A4AH-01 4 16597377 16597377 G C LDB2 Missense_Mutation p.D119E 0.32 tolerated(0.23) possibly_damaging(0.823) TCGA-J1-A4AH-01 4 174213283 174213283 A G GALNT7 Silent p.E204E 0.26 TCGA-J1-A4AH-01 4 177052752 177052752 G A WDR17 Missense_Mutation p.E345K 0.11 tolerated(0.09) probably_damaging(0.993) TCGA-J1-A4AH-01 4 177067265 177067265 G T WDR17 Missense_Mutation p.W574L 0.16 deleterious(0.01) benign(0.019) TCGA-J1-A4AH-01 4 187541047 187541047 G T FAT1 Missense_Mutation p.F2231L 0.14 probably_damaging(0.999) TCGA-J1-A4AH-01 4 30726124 30726124 C A PCDH7 Missense_Mutation p.A1027D 0.08 tolerated(0.92) possibly_damaging(0.7) TCGA-J1-A4AH-01 4 56471514 56471514 C A NMU Silent p.S121S 0.12 TCGA-J1-A4AH-01 4 57357640 57357640 G A SRP72 Missense_Mutation p.V516I 0.11 tolerated(0.57) benign(0.02) TCGA-J1-A4AH-01 4 71201117 71201117 G C CABS1 Missense_Mutation p.G121R 0.18 deleterious(0.03) probably_damaging(0.996) TCGA-J1-A4AH-01 4 88415550 88415550 G C SPARCL1 Silent p.L134L 0.17 TCGA-J1-A4AH-01 4 89015769 89015769 C G ABCG2 Missense_Mutation p.G594R 0.08 tolerated(0.22) benign(0.021) TCGA-J1-A4AH-01 4 99802255 99802255 A G EIF4E Missense_Mutation p.I224T 0.14 tolerated(1) benign(0.015) TCGA-J1-A4AH-01 4 9998429 9998429 T C SLC2A9 Missense_Mutation p.K129R 0.20 deleterious(0.04) benign(0.168) TCGA-J1-A4AH-01 5 111519764 111519764 T C EPB41L4A Missense_Mutation p.E524G 0.14 tolerated(0.09) benign(0.005) TCGA-J1-A4AH-01 5 129040073 129040073 G T ADAMTS19 Missense_Mutation p.D1095Y 0.13 deleterious(0) probably_damaging(0.996) TCGA-J1-A4AH-01 5 1416311 1416311 C G SLC6A3 Missense_Mutation p.W311C 0.27 deleterious(0) probably_damaging(0.998) TCGA-J1-A4AH-01 5 142680139 142680139 G C NR3C1 Missense_Mutation p.P554R 0.22 deleterious(0) probably_damaging(1) TCGA-J1-A4AH-01 5 150051173 150051173 C A MYOZ3 Missense_Mutation p.S77R 0.15 tolerated(0.09) possibly_damaging(0.677) TCGA-J1-A4AH-01 5 150908929 150908929 A C FAT2 Missense_Mutation p.L3279R 0.22 probably_damaging(1) TCGA-J1-A4AH-01 5 170395346 170395346 A G RANBP17 Missense_Mutation p.T559A 0.36 deleterious(0.03) benign(0.115) TCGA-J1-A4AH-01 5 205471 205471 C A CCDC127 Nonsense_Mutation p.E242* 0.16 TCGA-J1-A4AH-01 5 24537590 24537590 G T CDH10 Missense_Mutation p.P142Q 0.19 deleterious(0) probably_damaging(0.992) TCGA-J1-A4AH-01 5 24537591 24537591 G T CDH10 Missense_Mutation p.P142T 0.19 deleterious(0) probably_damaging(0.981) TCGA-J1-A4AH-01 6 152712409 152712409 T C SYNE1 Intron 0.39 TCGA-J1-A4AH-01 6 155458390 155458390 A T TIAM2 Missense_Mutation p.Q425L 0.25 tolerated(0.08) benign(0.01) TCGA-J1-A4AH-01 6 167728742 167728742 C G UNC93A Silent p.A392A 0.14 TCGA-J1-A4AH-01 6 24403316 24403316 G T MRS2 Silent p.A14A 0.36 TCGA-J1-A4AH-01 6 25777066 25777066 G C SLC17A4 Missense_Mutation p.V383L 0.05 tolerated(0.1) benign(0.058) TCGA-J1-A4AH-01 6 26235187 26235187 T C HIST1H1D 5'UTR 0.57 TCGA-J1-A4AH-01 6 31631717 31631717 G A GPANK1 Missense_Mutation p.A180V 0.08 deleterious(0) probably_damaging(0.999) TCGA-J1-A4AH-01 6 39304275 39304275 G A KIF6 3'UTR 0.19 TCGA-J1-A4AH-01 6 42975795 42975795 C T PPP2R5D Silent p.I283I 0.15 TCGA-J1-A4AH-01 6 51918925 51918925 C A PKHD1 Silent p.L625L 0.32 TCGA-J1-A4AH-01 6 84871509 84871509 G A KIAA1009 Missense_Mutation p.R878W 0.42 deleterious(0) probably_damaging(0.997) TCGA-J1-A4AH-01 6 93973596 93973596 C T EPHA7 Missense_Mutation p.E594K 0.13 tolerated(0.16) benign(0.053) TCGA-J1-A4AH-01 7 100361782 100361782 C A ZAN Silent p.G1410G 0.30 TCGA-J1-A4AH-01 7 100675651 100675651 G T MUC17 Silent p.T318T 0.33 TCGA-J1-A4AH-01 7 101845438 101845438 A G CUX1 Missense_Mutation p.E965G 0.07 deleterious(0) unknown(0) TCGA-J1-A4AH-01 7 102047936 102047936 A G PRKRIP1 Missense_Mutation p.K150E 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.621) TCGA-J1-A4AH-01 7 158534536 158534536 G C ESYT2 Missense_Mutation p.Q643E 0.24 tolerated(0.39) benign(0.209) TCGA-J1-A4AH-01 7 72683242 72683242 C A GTF2IRD2P1 RNA 0.14 TCGA-J1-A4AH-01 7 72683381 72683381 C T GTF2IRD2P1 RNA 0.16 TCGA-J1-A4AH-01 7 82784797 82784797 C A PCLO Missense_Mutation p.G387V 0.28 unknown(0) TCGA-J1-A4AH-01 7 99474292 99474292 C G OR2AE1 Missense_Mutation p.R122P 0.20 deleterious(0) probably_damaging(0.999) TCGA-J1-A4AH-01 8 100513958 100513958 C T VPS13B Missense_Mutation p.S1305F 0.08 deleterious(0) probably_damaging(0.982) TCGA-J1-A4AH-01 8 110980757 110980757 C T KCNV1 Missense_Mutation p.V355M 0.25 tolerated(0.91) probably_damaging(0.999) TCGA-J1-A4AH-01 8 121219242 121219242 G A COL14A1 Missense_Mutation p.R367K 0.24 tolerated(0.16) benign(0.396) TCGA-J1-A4AH-01 8 142435212 142435212 C T PTP4A3 Missense_Mutation p.P57L 0.16 tolerated(0.4) benign(0.02) TCGA-J1-A4AH-01 8 145135464 145135464 G A EXOSC4 Missense_Mutation p.R233Q 0.20 tolerated(0.12) benign(0.012) TCGA-J1-A4AH-01 8 61765406 61765406 C A CHD7 Missense_Mutation p.S2041Y 0.14 benign(0.129) TCGA-J1-A4AH-01 8 77617638 77617638 A T ZFHX4 Nonsense_Mutation p.K439* 0.21 TCGA-J1-A4AH-01 8 87241822 87241822 C G SLC7A13 Missense_Mutation p.G229R 0.13 deleterious(0.01) probably_damaging(0.978) TCGA-J1-A4AH-01 8 89053961 89053961 C A MMP16 Nonsense_Mutation p.E518* 0.15 TCGA-J1-A4AH-01 8 97172680 97172680 G T GDF6 Silent p.R81R 0.19 TCGA-J1-A4AH-01 8 97285598 97285598 G A PTDSS1 Missense_Mutation p.S84N 0.15 deleterious(0) benign(0.357) TCGA-J1-A4AH-01 9 104314899 104314899 G A RNF20 Missense_Mutation p.E589K 0.11 tolerated(0.59) benign(0.292) TCGA-J1-A4AH-01 9 112898981 112898981 C G PALM2-AKAP2 Missense_Mutation p.S386C 0.44 tolerated(0.06) probably_damaging(0.999) TCGA-J1-A4AH-01 9 131483754 131483754 C A ZDHHC12 Missense_Mutation p.W170C 0.75 deleterious(0) possibly_damaging(0.853) TCGA-J1-A4AH-01 9 131744858 131744858 G A NUP188 Missense_Mutation p.G516D 0.24 deleterious(0) probably_damaging(0.993) TCGA-J1-A4AH-01 9 25677788 25677788 C T TUSC1 Missense_Mutation p.E178K 0.21 deleterious_low_confidence(0.01) probably_damaging(0.982) TCGA-J1-A4AH-01 9 84605892 84605892 G T SPATA31D1 Silent p.S169S 0.38 TCGA-J1-A4AH-01 9 88938506 88938506 T A ZCCHC6 Missense_Mutation p.H720L 0.43 tolerated_low_confidence(0.68) benign(0.01) TCGA-J1-A4AH-01 X 100808828 100808828 G C ARMCX1 Missense_Mutation p.Q305H 0.29 deleterious(0) probably_damaging(0.996) TCGA-J1-A4AH-01 X 103499029 103499029 G C ESX1 Silent p.L104L 0.57 TCGA-J1-A4AH-01 X 105193634 105193634 T C NRK Missense_Mutation p.L1475P 0.48 deleterious(0) possibly_damaging(0.877) TCGA-J1-A4AH-01 X 140993513 140993513 C G MAGEC1 Missense_Mutation p.S108C 0.52 deleterious_low_confidence(0) possibly_damaging(0.7) TCGA-J1-A4AH-01 X 154467063 154467063 G A VBP1 Silent p.R178R 0.09 TCGA-J1-A4AH-01 X 34962377 34962377 G A FAM47B Missense_Mutation p.E477K 0.57 deleterious(0.04) benign(0.359) TCGA-J1-A4AH-01 X 47444682 47444682 G A TIMP1 Missense_Mutation p.G94R 0.69 deleterious(0) probably_damaging(1) TCGA-J1-A4AH-01 X 84502625 84502625 G C ZNF711 Missense_Mutation p.R16T 0.54 tolerated_low_confidence(0.15) benign(0.17) TCGA-J1-A4AH-01 X 96502772 96502772 G A DIAPH2 Silent p.L926L 0.49 TCGA-L3-A4E7-01 10 12126689 12126689 A G DHTKD1 Missense_Mutation p.Q154R 0.13 tolerated(0.48) benign(0.002) TCGA-L3-A4E7-01 11 1017213 1017213 A G MUC6 Missense_Mutation p.M1863T 0.09 possibly_damaging(0.692) TCGA-L3-A4E7-01 11 117209298 117209298 G T CEP164 5'UTR 0.19 TCGA-L3-A4E7-01 11 123847807 123847807 C A OR10S1 Missense_Mutation p.V198F 0.18 deleterious(0) probably_damaging(0.974) TCGA-L3-A4E7-01 11 40136115 40136115 C A LRRC4C Silent p.T576T 0.25 TCGA-L3-A4E7-01 11 49194935 49194935 C A FOLH1 Missense_Mutation p.R400M 0.20 deleterious(0) probably_damaging(0.989) TCGA-L3-A4E7-01 11 57957984 57957984 G C OR9Q2 Missense_Mutation p.V8L 0.22 tolerated(0.72) benign(0.001) TCGA-L3-A4E7-01 11 62491842 62491842 C A HNRNPUL2 Missense_Mutation p.G199W 0.23 deleterious(0) probably_damaging(0.994) TCGA-L3-A4E7-01 11 67075204 67075204 G A SSH3 Missense_Mutation p.G263S 0.31 tolerated(0.31) benign(0.014) TCGA-L3-A4E7-01 11 6913123 6913123 C T OR2D2 Silent p.G203G 0.20 TCGA-L3-A4E7-01 11 71155952 71155952 T A DHCR7 Missense_Mutation p.D16V 0.20 tolerated(0.2) benign(0.021) TCGA-L3-A4E7-01 11 85447607 85447607 G A SYTL2 Nonsense_Mutation p.Q174* 0.17 TCGA-L3-A4E7-01 12 10005970 10005970 T C CLEC2B Missense_Mutation p.S127G 0.07 tolerated(0.07) benign(0.093) TCGA-L3-A4E7-01 12 100926245 100926245 G T NR1H4 Missense_Mutation p.R162M 0.24 deleterious(0) probably_damaging(1) TCGA-L3-A4E7-01 12 100926246 100926246 G T NR1H4 Missense_Mutation p.R162S 0.23 deleterious(0.03) probably_damaging(1) TCGA-L3-A4E7-01 12 104124027 104124027 G T STAB2 Missense_Mutation p.R1739I 0.23 tolerated(0.53) benign(0.001) TCGA-L3-A4E7-01 12 112481503 112481503 T C NAA25 Missense_Mutation p.I726V 0.23 tolerated(0.76) benign(0.001) TCGA-L3-A4E7-01 12 120621450 120621450 G A GCN1L1 Silent p.A116A 0.17 TCGA-L3-A4E7-01 12 121881890 121881890 G T KDM2B Silent p.R792R 0.16 TCGA-L3-A4E7-01 12 40689336 40689336 G A LRRK2 Missense_Mutation p.D996N 0.19 tolerated(0.46) benign(0.032) TCGA-L3-A4E7-01 12 49390474 49390474 T A DDN 3'UTR 0.25 TCGA-L3-A4E7-01 12 57864455 57864455 G A GLI1 Silent p.Q644Q 0.20 TCGA-L3-A4E7-01 12 6438372 6438372 T A TNFRSF1A 3'UTR 0.40 TCGA-L3-A4E7-01 12 6640553 6640553 C T NCAPD2 Missense_Mutation p.A1394V 0.17 tolerated(0.06) benign(0.11) TCGA-L3-A4E7-01 13 39263537 39263537 C A FREM2 Missense_Mutation p.L686I 0.22 tolerated(0.21) benign(0) TCGA-L3-A4E7-01 14 19563684 19563684 C T POTEG Intron 0.09 TCGA-L3-A4E7-01 14 20443889 20443889 T A OR4K15 Missense_Mutation p.L71H 0.19 deleterious(0) probably_damaging(0.95) TCGA-L3-A4E7-01 14 33293054 33293054 C G AKAP6 Missense_Mutation p.A2012G 0.23 tolerated(0.16) benign(0.001) TCGA-L3-A4E7-01 14 58698807 58698807 A T ACTR10 Missense_Mutation p.Q298H 0.24 tolerated(0.11) possibly_damaging(0.814) TCGA-L3-A4E7-01 15 34014986 34014986 G A RYR3 Silent p.P2230P 0.04 TCGA-L3-A4E7-01 15 42115334 42115334 G T MAPKBP1 Missense_Mutation p.S1177I 0.26 tolerated(0.08) benign(0.066) TCGA-L3-A4E7-01 15 45393005 45393005 G A DUOX2 Missense_Mutation p.P985S 0.18 tolerated(0.81) benign(0) TCGA-L3-A4E7-01 15 56985399 56985399 G C ZNF280D Missense_Mutation p.N132K 0.18 tolerated(0.1) benign(0.016) TCGA-L3-A4E7-01 16 2156646 2156646 C A PKD1 Silent p.T2414T 0.18 TCGA-L3-A4E7-01 16 29998957 29998957 G T TAOK2 Missense_Mutation p.G1122C 0.15 deleterious_low_confidence(0) benign(0.001) TCGA-L3-A4E7-01 17 10426933 10426933 G T MYH2 Missense_Mutation p.H1784Q 0.24 deleterious(0.04) probably_damaging(0.968) TCGA-L3-A4E7-01 17 26099472 26099472 C T NOS2 Silent p.V522V 0.38 TCGA-L3-A4E7-01 17 58022765 58022765 A T RP11-178C3.1 Splice_Site p.X13_splice 0.29 TCGA-L3-A4E7-01 17 59761221 59761222 TG - BRIP1 Frame_Shift_Del p.T1062Ifs*18 0.26 TCGA-L3-A4E7-01 17 7578442 7578442 T C TP53 Missense_Mutation p.Y163C 0.27 deleterious(0) probably_damaging(0.999) TCGA-L3-A4E7-01 17 76481738 76481738 C A DNAH17 Silent p.T2445T 0.36 TCGA-L3-A4E7-01 19 22575589 22575589 G C ZNF98 Missense_Mutation p.Q150E 0.17 deleterious(0.03) benign(0.035) TCGA-L3-A4E7-01 19 35173795 35173795 C G ZNF302 Silent p.V41V 0.20 TCGA-L3-A4E7-01 19 37211293 37211293 C G ZNF567 Missense_Mutation p.T525S 0.21 tolerated(0.51) probably_damaging(0.981) TCGA-L3-A4E7-01 19 39820240 39820240 A G GMFG Missense_Mutation p.V76A 0.31 tolerated(0.74) benign(0.003) TCGA-L3-A4E7-01 19 45209003 45209003 C A CEACAM16 Missense_Mutation p.Q269K 0.16 tolerated(0.28) benign(0.003) TCGA-L3-A4E7-01 19 55396746 55396746 T C FCAR Missense_Mutation p.L57P 0.15 deleterious(0.01) probably_damaging(0.993) TCGA-L3-A4E7-01 19 7684859 7684859 C G XAB2 Missense_Mutation p.R790P 0.13 tolerated(0.28) benign(0.264) TCGA-L3-A4E7-01 1 103461431 103461431 T C COL11A1 Missense_Mutation p.K777E 0.12 unknown(0) TCGA-L3-A4E7-01 1 109968955 109968955 C T PSMA5 5'UTR 0.21 TCGA-L3-A4E7-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.39 tolerated(0.06) benign(0.006) TCGA-L3-A4E7-01 1 151665487 151665487 C T SNX27 Missense_Mutation p.P497L 0.18 deleterious(0.03) probably_damaging(0.994) TCGA-L3-A4E7-01 1 158224908 158224908 G T CD1A Missense_Mutation p.W31C 0.20 deleterious(0.02) benign(0.003) TCGA-L3-A4E7-01 1 167663537 167663537 A T RCSD1 Nonsense_Mutation p.K158* 0.34 TCGA-L3-A4E7-01 1 196654284 196654284 G A CFH Missense_Mutation p.C294Y 0.13 deleterious(0) probably_damaging(1) TCGA-L3-A4E7-01 1 207643383 207643383 C G CR2 Silent p.G387G 0.22 TCGA-L3-A4E7-01 1 230795371 230795371 G A COG2 Silent p.L78L 0.17 TCGA-L3-A4E7-01 1 241731920 241731920 G T KMO Silent p.V310V 0.24 TCGA-L3-A4E7-01 20 31827679 31827679 G T BPIFA1 Missense_Mutation p.V131F 0.21 deleterious(0) probably_damaging(0.934) TCGA-L3-A4E7-01 20 44664454 44664454 G T SLC12A5 Silent p.P129P 0.21 TCGA-L3-A4E7-01 21 15746069 15746069 A G HSPA13 Missense_Mutation p.S429P 0.19 deleterious(0) probably_damaging(0.999) TCGA-L3-A4E7-01 21 30933985 30933985 G T GRIK1 Silent p.G772G 0.29 TCGA-L3-A4E7-01 21 45999940 45999940 G A KRTAP10-5 Silent p.C172C 0.30 TCGA-L3-A4E7-01 22 39134955 39134955 C A SUN2 Nonsense_Mutation p.E589* 0.18 TCGA-L3-A4E7-01 22 50657238 50657238 C A TUBGCP6 Missense_Mutation p.G1572V 0.27 deleterious(0) probably_damaging(1) TCGA-L3-A4E7-01 22 50688922 50688922 G A HDAC10 Silent p.T75T 0.14 TCGA-L3-A4E7-01 2 105654518 105654518 C T MRPS9 5'UTR 0.29 TCGA-L3-A4E7-01 2 105900852 105900852 T G TGFBRAP1 Missense_Mutation p.M348L 0.22 tolerated(0.54) benign(0.004) TCGA-L3-A4E7-01 2 108487576 108487576 A C RGPD4 Missense_Mutation p.E1039A 0.16 deleterious(0) probably_damaging(0.919) TCGA-L3-A4E7-01 2 131878529 131878529 G C PLEKHB2 Missense_Mutation p.K5N 0.19 deleterious(0) probably_damaging(1) TCGA-L3-A4E7-01 2 141609278 141609278 C A LRP1B Missense_Mutation p.A1552S 0.20 benign(0.009) TCGA-L3-A4E7-01 2 179637845 179637845 T C TTN Missense_Mutation p.T2616A 0.24 TCGA-L3-A4E7-01 2 196681502 196681502 C T DNAH7 Missense_Mutation p.R3204H 0.13 tolerated(0.06) benign(0.003) TCGA-L3-A4E7-01 2 198950497 198950497 A G PLCL1 Missense_Mutation p.I752M 0.20 deleterious(0.05) benign(0.101) TCGA-L3-A4E7-01 2 210968836 210968836 C T KANSL1L Missense_Mutation p.E474K 0.13 deleterious(0) probably_damaging(0.963) TCGA-L3-A4E7-01 2 21234779 21234779 G T APOB Missense_Mutation p.T1654N 0.22 probably_damaging(0.994) TCGA-L3-A4E7-01 2 241683471 241683471 C G KIF1A Missense_Mutation p.V1158L 0.11 deleterious(0) probably_damaging(0.979) TCGA-L3-A4E7-01 2 40656845 40656845 G A SLC8A1 Silent p.D192D 0.18 TCGA-L3-A4E7-01 2 75347863 75347863 G A TACR1 Missense_Mutation p.R141W 0.04 deleterious(0.01) probably_damaging(0.999) TCGA-L3-A4E7-01 2 88874963 88874963 T A EIF2AK3 Missense_Mutation p.T680S 0.21 tolerated(0.18) benign(0.059) TCGA-L3-A4E7-01 3 121206243 121206243 C A POLQ Silent p.R1845R 0.22 TCGA-L3-A4E7-01 3 180381761 180381761 T C CCDC39 Missense_Mutation p.K35R 0.23 tolerated(0.09) benign(0.001) TCGA-L3-A4E7-01 3 184101106 184101106 A T CHRD Missense_Mutation p.Q407L 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-L3-A4E7-01 3 49695123 49695123 C T BSN Missense_Mutation p.R2712C 0.30 unknown(0) TCGA-L3-A4E7-01 3 69987092 69987092 G A MITF Silent p.L158L 0.10 TCGA-L3-A4E7-01 3 73432911 73432911 T G PDZRN3 Silent p.R936R 0.30 TCGA-L3-A4E7-01 3 97731209 97731209 C A GABRR3 RNA 0.30 TCGA-L3-A4E7-01 4 115585158 115585158 A T UGT8 Missense_Mutation p.Q277L 0.18 tolerated(0.12) benign(0.006) TCGA-L3-A4E7-01 4 123255506 123255506 A G KIAA1109 Missense_Mutation p.Y3885C 0.22 probably_damaging(0.994) TCGA-L3-A4E7-01 4 159812765 159812765 A T FNIP2 Missense_Mutation p.L1039F 0.12 deleterious(0.03) possibly_damaging(0.891) TCGA-L3-A4E7-01 4 52861747 52861747 C A LRRC66 Missense_Mutation p.D481Y 0.25 deleterious(0.01) possibly_damaging(0.656) TCGA-L3-A4E7-01 4 52862314 52862314 C G LRRC66 Missense_Mutation p.G292R 0.20 tolerated(0.57) benign(0.003) TCGA-L3-A4E7-01 4 69513003 69513003 T C UGT2B15 Missense_Mutation p.H471R 0.16 deleterious(0) probably_damaging(0.978) TCGA-L3-A4E7-01 4 96761272 96761272 C A PDHA2 5'UTR 0.15 TCGA-L3-A4E7-01 5 11364923 11364923 G T CTNND2 Missense_Mutation p.H419Q 0.16 deleterious(0.05) benign(0.099) TCGA-L3-A4E7-01 5 140215257 140215257 G T PCDHA7 Missense_Mutation p.G430V 0.34 deleterious_low_confidence(0) possibly_damaging(0.674) TCGA-L3-A4E7-01 5 147692103 147692103 C T SPINK7 Silent p.S19S 0.23 TCGA-L3-A4E7-01 5 149924969 149924969 G T NDST1 Missense_Mutation p.R689L 0.05 deleterious(0) probably_damaging(0.996) TCGA-L3-A4E7-01 5 178507210 178507210 G T ZNF354C 3'UTR 0.44 TCGA-L3-A4E7-01 5 26915926 26915926 G A CDH9 Missense_Mutation p.A112V 0.13 tolerated(0.13) probably_damaging(0.997) TCGA-L3-A4E7-01 5 41159258 41159258 G T C6 Silent p.P594P 0.20 TCGA-L3-A4E7-01 5 45262723 45262723 G T HCN1 Missense_Mutation p.S658Y 0.13 tolerated(0.94) benign(0.143) TCGA-L3-A4E7-01 6 152776692 152776692 G T SYNE1 Missense_Mutation p.H921N 0.13 benign(0.002) TCGA-L3-A4E7-01 6 170169794 170169794 G C ERMARD Silent p.L406L 0.13 TCGA-L3-A4E7-01 6 75860983 75860983 C A COL12A1 Missense_Mutation p.V1341F 0.14 benign(0.126) TCGA-L3-A4E7-01 7 103969349 103969349 C T LHFPL3 Missense_Mutation p.A41V 0.24 deleterious(0) probably_damaging(0.998) TCGA-L3-A4E7-01 7 107406268 107406268 T C SLC26A3 3'UTR 0.07 TCGA-L3-A4E7-01 7 107838418 107838418 C T NRCAM Missense_Mutation p.A445T 0.26 deleterious(0) benign(0.209) TCGA-L3-A4E7-01 7 113558437 113558437 A - PPP1R3A Frame_Shift_Del p.E206Sfs*36 0.11 TCGA-L3-A4E7-01 7 131012640 131012640 C T MKLN1 5'UTR 0.25 TCGA-L3-A4E7-01 7 131864529 131864529 G T PLXNA4 Missense_Mutation p.S1264Y 0.27 deleterious(0) probably_damaging(0.981) TCGA-L3-A4E7-01 7 148769115 148769115 C T ZNF786 Missense_Mutation p.R250H 0.29 tolerated(0.46) benign(0.086) TCGA-L3-A4E7-01 7 34884511 34884511 G T NPSR1 Missense_Mutation p.G254V 0.16 tolerated(0.1) benign(0.072) TCGA-L3-A4E7-01 7 34884512 34884512 G T NPSR1 Silent p.G254G 0.14 TCGA-L3-A4E7-01 7 76121570 76121570 G T DTX2 Missense_Mutation p.G337C 0.22 deleterious(0) probably_damaging(0.929) TCGA-L3-A4E7-01 8 103297443 103297443 G A UBR5 Missense_Mutation p.H1870Y 0.33 deleterious(0.01) possibly_damaging(0.885) TCGA-L3-A4E7-01 9 104133320 104133320 T C BAAT Missense_Mutation p.K123E 0.38 tolerated(0.91) benign(0.081) TCGA-L3-A4E7-01 9 130207428 130207428 G T ZNF79 Silent p.R483R 0.26 TCGA-L3-A4E7-01 9 139888328 139888328 C T C9orf142 3'UTR 0.44 TCGA-L3-A4E7-01 9 18829885 18829885 C T ADAMTSL1 Missense_Mutation p.L1387F 0.16 tolerated(0.29) benign(0.02) TCGA-L3-A4E7-01 9 33030602 33030602 A G DNAJA1 Missense_Mutation p.K194E 0.20 tolerated(0.08) benign(0.371) TCGA-L3-A4E7-01 X 101138746 101138746 C A ZMAT1 Missense_Mutation p.R551S 0.45 deleterious(0.05) benign(0.219) TCGA-L3-A4E7-01 X 101969772 101969772 A T GPRASP2 5'UTR 0.52 TCGA-L3-A4E7-01 X 120009292 120009292 C A CT47B1 Missense_Mutation p.G78V 0.50 tolerated(0.18) possibly_damaging(0.833) TCGA-L3-A4E7-01 X 130218650 130218650 C T ARHGAP36 Missense_Mutation p.R267C 0.38 deleterious(0) possibly_damaging(0.788) TCGA-L3-A4E7-01 X 152814120 152814120 C T ATP2B3 Silent p.T382T 0.06 TCGA-L3-A4E7-01 X 73048864 73048864 T A TSIX RNA 0.48 TCGA-L3-A4E7-01 X 83724059 83724059 T A HDX Silent p.P224P 0.53 TCGA-L3-A524-01 10 103530164 103530164 G T FGF8 Silent p.R219R 0.50 TCGA-L3-A524-01 10 1052966 1052966 T A GTPBP4 Missense_Mutation p.D337E 0.28 tolerated(0.64) benign(0.004) TCGA-L3-A524-01 10 123842195 123842195 C G TACC2 Silent p.T60T 0.28 TCGA-L3-A524-01 10 134906654 134906654 G C GPR123 Intron 0.31 TCGA-L3-A524-01 10 15210606 15210606 C G NMT2 Silent p.A2A 0.24 TCGA-L3-A524-01 10 38404181 38404181 G A ZNF37A Nonsense_Mutation p.W67* 0.08 TCGA-L3-A524-01 10 55582025 55582025 G C PCDH15 Missense_Mutation p.P1823A 0.22 tolerated_low_confidence(0.2) unknown(0) TCGA-L3-A524-01 10 55779990 55779990 T A PCDH15 Missense_Mutation p.M905L 0.30 tolerated(0.14) benign(0.147) TCGA-L3-A524-01 10 55779992 55779992 G T PCDH15 Missense_Mutation p.T904K 0.31 tolerated(0.16) benign(0.261) TCGA-L3-A524-01 10 64957325 64957325 T A JMJD1C Splice_Site p.X1831_splice 0.28 TCGA-L3-A524-01 10 65140240 65140240 C A JMJD1C Silent p.V57V 0.23 TCGA-L3-A524-01 10 65140242 65140242 C A JMJD1C Missense_Mutation p.V57L 0.21 deleterious(0.03) benign(0.111) TCGA-L3-A524-01 10 70333084 70333084 T C TET1 Missense_Mutation p.L330P 0.27 deleterious(0.03) probably_damaging(0.959) TCGA-L3-A524-01 10 7759677 7759677 G T ITIH2 Missense_Mutation p.V186L 0.27 tolerated(1) benign(0.003) TCGA-L3-A524-01 10 87484199 87484199 T C GRID1 Missense_Mutation p.R590G 0.23 deleterious(0.01) possibly_damaging(0.697) TCGA-L3-A524-01 10 89503320 89503320 C T PAPSS2 Silent p.L471L 0.33 TCGA-L3-A524-01 11 108150277 108150277 T - ATM Frame_Shift_Del p.Q1116Sfs*10 0.30 TCGA-L3-A524-01 11 109294863 109294863 G A C11orf87 Silent p.P168P 0.19 TCGA-L3-A524-01 11 118220511 118220511 A G CD3G Missense_Mutation p.T45A 0.20 tolerated(0.26) benign(0.062) TCGA-L3-A524-01 11 118533801 118533801 G A TREH Nonsense_Mutation p.Q99* 0.23 TCGA-L3-A524-01 11 119185608 119185608 C T MCAM Missense_Mutation p.R112H 0.08 deleterious(0.04) probably_damaging(0.998) TCGA-L3-A524-01 11 123455025 123455025 C G GRAMD1B Missense_Mutation p.S80R 0.45 tolerated(0.06) probably_damaging(0.993) TCGA-L3-A524-01 11 126132141 126132141 C T FAM118B 3'UTR 0.25 TCGA-L3-A524-01 11 133790081 133790081 C A IGSF9B Missense_Mutation p.S1180I 0.47 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-L3-A524-01 11 15243168 15243168 T C INSC Missense_Mutation p.M369T 0.42 deleterious(0) possibly_damaging(0.818) TCGA-L3-A524-01 11 4621739 4621739 C A TRIM68 Missense_Mutation p.D409Y 0.56 deleterious(0.04) probably_damaging(0.947) TCGA-L3-A524-01 11 46388940 46388940 G T DGKZ Silent p.V276V 0.20 TCGA-L3-A524-01 11 48347258 48347258 G C OR4C3 Missense_Mutation p.D256H 0.31 deleterious(0) possibly_damaging(0.652) TCGA-L3-A524-01 11 49974418 49974418 A G OR4C13 Silent p.V148V 0.36 TCGA-L3-A524-01 11 5255628 5255628 G C HBD Silent p.V12V 0.16 TCGA-L3-A524-01 11 55541514 55541514 T C OR5D13 Missense_Mutation p.C201R 0.42 deleterious(0.02) possibly_damaging(0.82) TCGA-L3-A524-01 11 55563556 55563556 A T OR5D14 Silent p.V175V 0.18 TCGA-L3-A524-01 11 56057728 56057728 G T OR8H1 Missense_Mutation p.Q271K 0.37 tolerated(0.5) possibly_damaging(0.58) TCGA-L3-A524-01 11 56431524 56431524 T A OR5AR1 Silent p.G121G 0.22 TCGA-L3-A524-01 11 57947916 57947916 T C OR9Q1 3'UTR 0.31 TCGA-L3-A524-01 11 5862262 5862262 T C OR52E6 Missense_Mutation p.N289S 0.22 deleterious(0) probably_damaging(0.996) TCGA-L3-A524-01 11 5862370 5862370 G C OR52E6 Missense_Mutation p.S253C 0.21 deleterious(0) benign(0.032) TCGA-L3-A524-01 11 60620599 60620599 G C PTGDR2 Missense_Mutation p.C199W 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-L3-A524-01 11 64876300 64876300 A T VPS51 Missense_Mutation p.I453F 0.22 deleterious(0.01) possibly_damaging(0.489) TCGA-L3-A524-01 11 65403209 65403209 G T PCNXL3 Silent p.R1798R 0.55 TCGA-L3-A524-01 11 65482117 65482117 C - KAT5 Frame_Shift_Del p.P282Rfs*32 0.22 TCGA-L3-A524-01 11 6661086 6661086 G T DCHS1 Missense_Mutation p.L587M 0.18 deleterious(0.01) probably_damaging(0.988) TCGA-L3-A524-01 11 68193475 68193475 A T LRP5 Missense_Mutation p.N1153Y 0.29 deleterious(0.02) benign(0.169) TCGA-L3-A524-01 11 7064661 7064661 G T NLRP14 Missense_Mutation p.K468N 0.18 deleterious(0) possibly_damaging(0.494) TCGA-L3-A524-01 11 73102251 73102251 G T RELT Missense_Mutation p.G117V 0.20 deleterious(0.01) benign(0.358) TCGA-L3-A524-01 11 82880970 82880970 C - PCF11 Frame_Shift_Del p.S1198Ffs*13 0.16 TCGA-L3-A524-01 11 8959460 8959460 G A ASCL3 Silent p.Y83Y 0.27 TCGA-L3-A524-01 11 92532916 92532916 T C FAT3 Missense_Mutation p.L2246S 0.22 probably_damaging(1) TCGA-L3-A524-01 12 101720957 101720957 G T UTP20 Missense_Mutation p.G1047V 0.20 deleterious(0.02) probably_damaging(0.998) TCGA-L3-A524-01 12 103246634 103246634 C A PAH Missense_Mutation p.Q267H 0.60 deleterious(0) probably_damaging(1) TCGA-L3-A524-01 12 10588592 10588592 A C KLRC2 5'UTR 0.10 TCGA-L3-A524-01 12 108051482 108051482 G T BTBD11 Missense_Mutation p.G1101V 0.16 deleterious(0.01) probably_damaging(1) TCGA-L3-A524-01 12 10978425 10978425 C G TAS2R10 Silent p.A148A 0.33 TCGA-L3-A524-01 12 111748283 111748283 T A CUX2 Missense_Mutation p.L566Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-L3-A524-01 12 117655943 117655943 A G NOS1 Silent p.I1433I 0.04 TCGA-L3-A524-01 12 124345669 124345669 C G DNAH10 Nonsense_Mutation p.S2169* 0.31 TCGA-L3-A524-01 12 130184785 130184785 G T TMEM132D Silent p.R180R 0.12 TCGA-L3-A524-01 12 20769165 20769165 G C PDE3A Missense_Mutation p.R424P 0.47 tolerated(0.11) probably_damaging(0.999) TCGA-L3-A524-01 12 21715939 21715939 G C GYS2 Missense_Mutation p.F325L 0.35 deleterious(0.01) possibly_damaging(0.447) TCGA-L3-A524-01 12 25705897 25705897 G T IFLTD1 5'UTR 0.28 TCGA-L3-A524-01 12 30792505 30792505 T G IPO8 Silent p.G811G 0.41 TCGA-L3-A524-01 12 394646 394646 C A KDM5A Missense_Mutation p.M1683I 0.27 tolerated_low_confidence(0.36) benign(0.003) TCGA-L3-A524-01 12 40749984 40749984 G C LRRK2 Missense_Mutation p.V2280L 0.48 tolerated(0.71) benign(0.167) TCGA-L3-A524-01 12 43896056 43896056 A G ADAMTS20 Missense_Mutation p.S256P 0.37 deleterious(0) probably_damaging(1) TCGA-L3-A524-01 12 48057317 48057317 C A RPAP3 Nonsense_Mutation p.E657* 0.30 TCGA-L3-A524-01 12 50026899 50026899 A T PRPF40B Nonsense_Mutation p.K151* 0.55 TCGA-L3-A524-01 12 50586267 50586267 G C LIMA1 Missense_Mutation p.L371V 0.15 tolerated(0.58) benign(0.032) TCGA-L3-A524-01 12 53200967 53200967 G C KRT4 Silent p.G483G 0.30 TCGA-L3-A524-01 12 665730 665730 G T B4GALNT3 Missense_Mutation p.R693L 0.22 deleterious(0.01) possibly_damaging(0.616) TCGA-L3-A524-01 12 8200811 8200811 C - FOXJ2 Frame_Shift_Del p.H385Tfs*37 0.30 TCGA-L3-A524-01 13 103249436 103249436 G T TPP2 Silent p.L16L 0.58 TCGA-L3-A524-01 13 28599049 28599049 G T FLT3 Missense_Mutation p.P747T 0.57 tolerated(0.46) benign(0.056) TCGA-L3-A524-01 13 58209162 58209162 G A PCDH17 Missense_Mutation p.G828R 0.41 tolerated(0.11) benign(0.009) TCGA-L3-A524-01 13 88329545 88329545 C T SLITRK5 Silent p.T634T 0.06 TCGA-L3-A524-01 13 99337142 99337142 A C SLC15A1 Missense_Mutation p.L655V 0.59 deleterious(0) probably_damaging(0.967) TCGA-L3-A524-01 14 101198416 101198416 C A DLK1 Missense_Mutation p.N100K 0.52 deleterious(0) probably_damaging(1) TCGA-L3-A524-01 14 101515942 101515942 C A MIR655 RNA 0.49 TCGA-L3-A524-01 14 105413283 105413283 C T AHNAK2 Silent p.S2835S 0.16 TCGA-L3-A524-01 14 106791173 106791173 G A IGHV3-30 Silent p.G61G 0.03 TCGA-L3-A524-01 14 106791207 106791207 C G IGHV3-30 Missense_Mutation p.S50T 0.09 tolerated_low_confidence(0.11) benign(0.005) TCGA-L3-A524-01 14 22205220 22205220 T G TRAV4 Missense_Mutation p.V95G 0.16 deleterious(0) benign(0.125) TCGA-L3-A524-01 14 24800491 24800491 C A ADCY4 Silent p.L247L 0.29 TCGA-L3-A524-01 14 50611930 50611930 T A SOS2 Silent p.A875A 0.56 TCGA-L3-A524-01 14 70635120 70635120 T A SLC8A3 Missense_Mutation p.Q7L 0.24 tolerated_low_confidence(0.17) benign(0.001) TCGA-L3-A524-01 14 92268713 92268713 G A TC2N Silent p.S118S 0.47 TCGA-L3-A524-01 14 92403478 92403478 G T FBLN5 Silent p.G64G 0.39 TCGA-L3-A524-01 14 96811633 96811633 C T ATG2B Missense_Mutation p.E139K 0.35 deleterious(0.03) possibly_damaging(0.525) TCGA-L3-A524-01 15 100821592 100821592 T A ADAMTS17 Missense_Mutation p.T211S 0.33 tolerated(0.63) benign(0) TCGA-L3-A524-01 15 24921264 24921264 G T NPAP1 Missense_Mutation p.V84F 0.41 deleterious(0.01) possibly_damaging(0.607) TCGA-L3-A524-01 15 24921404 24921404 A T NPAP1 Silent p.P130P 0.39 TCGA-L3-A524-01 15 24922250 24922250 C T NPAP1 Silent p.P412P 0.33 TCGA-L3-A524-01 15 25940284 25940284 C A ATP10A Missense_Mutation p.A924S 0.07 tolerated(0.26) benign(0.01) TCGA-L3-A524-01 15 35085772 35085772 T A ACTC1 Splice_Site p.X44_splice 0.39 TCGA-L3-A524-01 15 48433439 48433439 T C MYEF2 3'UTR 0.62 TCGA-L3-A524-01 15 57730399 57730399 T C CGNL1 Missense_Mutation p.S68P 0.40 tolerated(0.37) benign(0.002) TCGA-L3-A524-01 15 68582737 68582737 C T FEM1B Silent p.I347I 0.07 TCGA-L3-A524-01 15 71403618 71403618 C A CT62 Missense_Mutation p.V95F 0.56 deleterious_low_confidence(0.01) unknown(0) TCGA-L3-A524-01 15 72987537 72987537 C G BBS4 Missense_Mutation p.S15C 0.07 deleterious(0.01) benign(0.401) TCGA-L3-A524-01 15 79356790 79356790 C A RASGRF1 Nonsense_Mutation p.E119* 0.25 TCGA-L3-A524-01 15 88472662 88472662 G A NTRK3 Silent p.A631A 0.16 TCGA-L3-A524-01 15 89804914 89804914 A T FANCI Missense_Mutation p.L129F 0.36 deleterious(0) probably_damaging(0.999) TCGA-L3-A524-01 15 89866060 89866060 T A POLG Missense_Mutation p.Q780L 0.15 tolerated(0.1) possibly_damaging(0.489) TCGA-L3-A524-01 15 90611751 90611751 G A ZNF710 Missense_Mutation p.R461Q 0.08 deleterious(0) probably_damaging(0.992) TCGA-L3-A524-01 15 93616171 93616171 G T RGMA Missense_Mutation p.A43D 0.19 tolerated(0.24) possibly_damaging(0.549) TCGA-L3-A524-01 16 11000393 11000393 G T CIITA Silent p.T348T 0.21 TCGA-L3-A524-01 16 21213546 21213546 G T ZP2 Missense_Mutation p.P389Q 0.30 deleterious(0) probably_damaging(0.998) TCGA-L3-A524-01 16 21709192 21709192 T C OTOA Missense_Mutation p.I279T 0.29 tolerated(0.78) benign(0.002) TCGA-L3-A524-01 16 23766387 23766387 C - CHP2 Frame_Shift_Del p.H7Tfs*40 0.35 TCGA-L3-A524-01 16 27374235 27374235 G T IL4R Missense_Mutation p.R521I 0.25 tolerated(0.08) benign(0.019) TCGA-L3-A524-01 16 29848101 29848101 G T MVP Missense_Mutation p.R244L 0.17 tolerated(0.05) benign(0.298) TCGA-L3-A524-01 16 3565517 3565517 A G CLUAP1 Missense_Mutation p.T169A 0.21 tolerated(0.09) benign(0.008) TCGA-L3-A524-01 16 76495988 76495988 C A CNTNAP4 Missense_Mutation p.T417N 0.79 tolerated(0.24) possibly_damaging(0.493) TCGA-L3-A524-01 17 12639506 12639506 G C MYOCD Silent p.T148T 0.18 TCGA-L3-A524-01 17 21318906 21318906 G A KCNJ12 Silent p.L84L 0.31 TCGA-L3-A524-01 17 35921344 35921344 T C SYNRG Missense_Mutation p.Y539C 0.13 deleterious(0) probably_damaging(0.936) TCGA-L3-A524-01 17 36047267 36047267 G T HNF1B 3'UTR 0.19 TCGA-L3-A524-01 17 40001888 40001888 C A KLHL10 Missense_Mutation p.R399S 0.21 deleterious(0) probably_damaging(0.939) TCGA-L3-A524-01 17 41570903 41570903 G C DHX8 Missense_Mutation p.R318S 0.19 tolerated(0.56) benign(0.017) TCGA-L3-A524-01 17 42635779 42635779 G A FZD2 Silent p.T241T 0.54 TCGA-L3-A524-01 17 48762121 48762121 A C ABCC3 Missense_Mutation p.S1389R 0.14 tolerated(0.56) benign(0.004) TCGA-L3-A524-01 17 54981663 54981663 C A TRIM25 Nonsense_Mutation p.E294* 0.17 TCGA-L3-A524-01 17 57915661 57915661 T G VMP1 Missense_Mutation p.V327G 0.16 deleterious(0) possibly_damaging(0.692) TCGA-L3-A524-01 17 59820492 59820492 C A BRIP1 Missense_Mutation p.G754V 0.17 deleterious(0) probably_damaging(0.985) TCGA-L3-A524-01 17 7163599 7163599 C T CLDN7 3'UTR 0.06 TCGA-L3-A524-01 17 7320294 7320294 C G NLGN2 Missense_Mutation p.P562A 0.88 tolerated(0.44) probably_damaging(0.933) TCGA-L3-A524-01 17 7577580 7577580 T C TP53 Missense_Mutation p.Y234C 0.57 deleterious(0) probably_damaging(0.992) TCGA-L3-A524-01 17 80048306 80048306 C A FASN Missense_Mutation p.W605C 0.50 deleterious(0.02) probably_damaging(0.999) TCGA-L3-A524-01 17 80540720 80540720 C T FOXK2 Missense_Mutation p.S338F 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-L3-A524-01 18 13387647 13387647 G A LDLRAD4 5'UTR 0.06 TCGA-L3-A524-01 18 56377207 56377207 G T MALT1 Splice_Site p.X277_splice 0.52 TCGA-L3-A524-01 18 64178836 64178836 G T CDH19 Missense_Mutation p.N515K 0.27 tolerated(0.43) benign(0.003) TCGA-L3-A524-01 18 70205389 70205389 C A CBLN2 3'UTR 0.22 TCGA-L3-A524-01 19 15752396 15752396 G T CYP4F3 Silent p.R57R 0.04 TCGA-L3-A524-01 19 16688066 16688066 A G MED26 Missense_Mutation p.F192S 0.21 deleterious(0.03) benign(0.282) TCGA-L3-A524-01 19 20808188 20808188 T A ZNF626 Missense_Mutation p.R165S 0.30 deleterious(0.02) benign(0.133) TCGA-L3-A524-01 19 23543946 23543946 A T ZNF91 Missense_Mutation p.L612Q 0.09 tolerated(0.66) possibly_damaging(0.808) TCGA-L3-A524-01 19 31768537 31768537 G C TSHZ3 Missense_Mutation p.P721R 0.18 deleterious(0) probably_damaging(0.999) TCGA-L3-A524-01 19 32973000 32973000 G - DPY19L3 Frame_Shift_Del p.G669Efs*7 0.40 TCGA-L3-A524-01 19 34292106 34292106 G T KCTD15 Missense_Mutation p.R34L 0.65 deleterious_low_confidence(0.02) possibly_damaging(0.588) TCGA-L3-A524-01 19 36883517 36883517 A G ZFP82 3'UTR 0.67 TCGA-L3-A524-01 19 37039070 37039070 G A ZNF529 Silent p.D130D 0.12 TCGA-L3-A524-01 19 38684402 38684402 G T SIPA1L3 Missense_Mutation p.G1608C 0.60 deleterious(0.01) possibly_damaging(0.899) TCGA-L3-A524-01 19 39307139 39307139 C T ECH1 Missense_Mutation p.D205N 0.18 deleterious(0) probably_damaging(0.997) TCGA-L3-A524-01 19 40411852 40411852 T A FCGBP Missense_Mutation p.H1259L 0.17 probably_damaging(1) TCGA-L3-A524-01 19 40580662 40580662 C A ZNF780A Missense_Mutation p.G564W 0.19 deleterious(0.02) probably_damaging(0.991) TCGA-L3-A524-01 19 41442022 41442022 C A CYP2B7P RNA 0.66 TCGA-L3-A524-01 19 4157041 4157041 G T CREB3L3 Missense_Mutation p.G69V 0.18 deleterious(0.01) possibly_damaging(0.834) TCGA-L3-A524-01 19 42730177 42730177 C T ZNF526 Missense_Mutation p.S541F 0.11 deleterious(0) probably_damaging(0.996) TCGA-L3-A524-01 19 4290532 4290532 G C SHD Missense_Mutation p.V309L 0.32 deleterious(0) possibly_damaging(0.866) TCGA-L3-A524-01 19 49377613 49377613 G C PPP1R15A Missense_Mutation p.A375P 0.21 tolerated(0.36) benign(0.133) TCGA-L3-A524-01 19 50374942 50374942 G A AKT1S1 Silent p.G183G 0.27 TCGA-L3-A524-01 19 51728476 51728476 G T CD33 Missense_Mutation p.A14S 0.40 tolerated(1) benign(0.005) TCGA-L3-A524-01 19 52468322 52468322 T A ZNF350 Missense_Mutation p.T462S 0.11 tolerated(0.09) benign(0.104) TCGA-L3-A524-01 19 52671350 52671350 C A ZNF836 5'UTR 0.18 TCGA-L3-A524-01 19 53057066 53057066 G T ZNF808 Missense_Mutation p.K299N 0.30 tolerated(0.69) benign(0.001) TCGA-L3-A524-01 19 54867972 54867972 G C LAIR1 Missense_Mutation p.Q207E 0.13 deleterious(0) possibly_damaging(0.585) TCGA-L3-A524-01 19 55606937 55606937 C G PPP1R12C Missense_Mutation p.G421A 0.33 deleterious(0.02) benign(0.366) TCGA-L3-A524-01 19 57335789 57335789 T A PEG3 Missense_Mutation p.T79S 0.25 tolerated(0.19) benign(0.033) TCGA-L3-A524-01 19 58004701 58004701 A T ZNF419 Missense_Mutation p.Y260F 0.30 tolerated(0.06) benign(0.259) TCGA-L3-A524-01 19 59011986 59011986 C T SLC27A5 Missense_Mutation p.G424S 0.22 deleterious(0.02) probably_damaging(0.921) TCGA-L3-A524-01 19 7125459 7125459 C G INSR Missense_Mutation p.Q1031H 0.16 deleterious(0) probably_damaging(0.972) TCGA-L3-A524-01 19 8367862 8367862 T C CD320 Missense_Mutation p.T169A 0.13 deleterious(0.02) benign(0.078) TCGA-L3-A524-01 1 104234143 104234143 C A AMY1B Missense_Mutation p.G323V 0.17 deleterious(0) probably_damaging(1) TCGA-L3-A524-01 1 104234144 104234144 C G AMY1B Missense_Mutation p.G323R 0.17 deleterious(0) probably_damaging(1) TCGA-L3-A524-01 1 120438741 120438741 G A ADAM30 Silent p.H73H 0.15 TCGA-L3-A524-01 1 12856070 12856070 C A PRAMEF1 Silent p.I450I 0.09 TCGA-L3-A524-01 1 149900935 149900935 T C MTMR11 3'UTR 0.49 TCGA-L3-A524-01 1 149902852 149902852 C A MTMR11 Silent p.P432P 0.42 TCGA-L3-A524-01 1 149902853 149902853 G T MTMR11 Missense_Mutation p.P432Q 0.43 deleterious(0) probably_damaging(0.996) TCGA-L3-A524-01 1 150298296 150298296 A T PRPF3 Missense_Mutation p.H78L 0.05 tolerated(0.5) benign(0.173) TCGA-L3-A524-01 1 151149216 151149216 C T VPS72 Silent p.P344P 0.36 TCGA-L3-A524-01 1 167384975 167384975 G T POU2F1 Missense_Mutation p.Q743H 0.47 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-L3-A524-01 1 167806511 167806511 G T ADCY10 Missense_Mutation p.S1018Y 0.39 tolerated(0.41) benign(0.003) TCGA-L3-A524-01 1 181707562 181707562 G A CACNA1E Silent p.K1204K 0.05 TCGA-L3-A524-01 1 184006319 184006319 G T COLGALT2 Missense_Mutation p.A58E 0.38 deleterious(0) possibly_damaging(0.744) TCGA-L3-A524-01 1 20005715 20005715 C A HTR6 Silent p.R393R 0.38 TCGA-L3-A524-01 1 201022676 201022676 G T CACNA1S Missense_Mutation p.R1236S 0.13 deleterious(0.01) possibly_damaging(0.494) TCGA-L3-A524-01 1 203316579 203316579 G A FMOD Missense_Mutation p.R274W 0.32 deleterious(0) probably_damaging(1) TCGA-L3-A524-01 1 2106218 2106218 C T PRKCZ Silent p.I477I 0.72 TCGA-L3-A524-01 1 232581285 232581285 C T SIPA1L2 Missense_Mutation p.D1115N 0.15 tolerated(0.26) probably_damaging(0.999) TCGA-L3-A524-01 1 237494236 237494236 G T RYR2 Missense_Mutation p.R76L 0.26 possibly_damaging(0.649) TCGA-L3-A524-01 1 241904897 241904897 A G WDR64 Silent p.E457E 0.30 TCGA-L3-A524-01 1 245765899 245765899 C T KIF26B Silent p.I457I 0.22 TCGA-L3-A524-01 1 248487179 248487179 C A OR2M7 Missense_Mutation p.G231V 0.43 tolerated(0.19) benign(0.365) TCGA-L3-A524-01 1 249106239 249106239 A C SH3BP5L Missense_Mutation p.C348G 0.42 deleterious_low_confidence(0.02) benign(0.023) TCGA-L3-A524-01 1 26691256 26691256 G A ZNF683 Nonsense_Mutation p.Q261* 0.69 TCGA-L3-A524-01 1 35370754 35370754 T A DLGAP3 Silent p.P77P 0.83 TCGA-L3-A524-01 1 40779905 40779905 T A COL9A2 Missense_Mutation p.D74V 0.16 tolerated(0.06) unknown(0) TCGA-L3-A524-01 1 67195010 67195010 T C SGIP1 Silent p.F602F 0.60 TCGA-L3-A524-01 20 13839943 13839943 C G SEL1L2 Intron 0.15 TCGA-L3-A524-01 20 13845817 13845817 A T SEL1L2 Missense_Mutation p.F492Y 0.09 tolerated_low_confidence(0.28) benign(0.004) TCGA-L3-A524-01 20 18477842 18477842 G T RBBP9 5'UTR 0.11 TCGA-L3-A524-01 20 33589754 33589754 C A MYH7B Missense_Mutation p.Q1936K 0.13 benign(0.069) TCGA-L3-A524-01 20 3719363 3719363 C T HSPA12B Silent p.I14I 0.08 TCGA-L3-A524-01 20 46292211 46292211 G A SULF2 Missense_Mutation p.A738V 0.20 deleterious(0.02) possibly_damaging(0.667) TCGA-L3-A524-01 20 57769437 57769437 C A ZNF831 Silent p.G1121G 0.56 TCGA-L3-A524-01 20 7894945 7894945 T A HAO1 Silent p.R137R 0.12 TCGA-L3-A524-01 21 40823835 40823835 T A SH3BGR Translation_Start_Site p.M1? 0.20 deleterious_low_confidence(0) unknown(0) TCGA-L3-A524-01 21 46066679 46066679 C T KRTAP10-11 Missense_Mutation p.P102S 0.17 deleterious(0.04) unknown(0) TCGA-L3-A524-01 22 17265030 17265030 C T XKR3 Missense_Mutation p.G287R 0.09 tolerated(0.38) probably_damaging(0.995) TCGA-L3-A524-01 22 26422861 26422861 A G MYO18B Silent p.A2307A 0.30 TCGA-L3-A524-01 22 35478618 35478618 A C ISX Missense_Mutation p.S113R 0.48 deleterious(0) possibly_damaging(0.606) TCGA-L3-A524-01 22 38895451 38895451 A G DDX17 Silent p.D164D 0.14 TCGA-L3-A524-01 22 40069074 40069074 G T CACNA1I Silent p.L1590L 0.45 TCGA-L3-A524-01 22 40708945 40708945 G T TNRC6B Missense_Mutation p.G1541V 0.19 deleterious(0.03) probably_damaging(1) TCGA-L3-A524-01 2 100623814 100623814 C A AFF3 Missense_Mutation p.V120F 0.16 deleterious(0) probably_damaging(0.999) TCGA-L3-A524-01 2 103136331 103136331 C A SLC9A4 Missense_Mutation p.Q579K 0.20 tolerated(0.41) benign(0.004) TCGA-L3-A524-01 2 11758637 11758637 G T GREB1 Missense_Mutation p.Q1212H 0.48 tolerated(0.09) benign(0.005) TCGA-L3-A524-01 2 120858293 120858293 G T EPB41L5 Missense_Mutation p.A414S 0.30 tolerated(0.62) benign(0.002) TCGA-L3-A524-01 2 125521569 125521569 C - CNTNAP5 Frame_Shift_Del p.V793Sfs*37 0.27 TCGA-L3-A524-01 2 130831791 130831791 T G POTEF 3'UTR 0.19 TCGA-L3-A524-01 2 135988122 135988122 G T ZRANB3 Missense_Mutation p.P639T 0.26 deleterious(0.04) benign(0.172) TCGA-L3-A524-01 2 138033583 138033583 G T THSD7B Silent p.G829G 0.13 TCGA-L3-A524-01 2 138421123 138421123 G T THSD7B Missense_Mutation p.W1546C 0.32 deleterious(0) unknown(0) TCGA-L3-A524-01 2 141032123 141032123 C T LRP1B Missense_Mutation p.G4338R 0.26 benign(0.009) TCGA-L3-A524-01 2 152319959 152319959 G T RIF1 Nonsense_Mutation p.E1309* 0.25 TCGA-L3-A524-01 2 152350679 152350679 C A NEB Missense_Mutation p.S8192I 0.25 probably_damaging(0.969) TCGA-L3-A524-01 2 160132103 160132103 C T WDSUB1 Silent p.Q210Q 0.20 TCGA-L3-A524-01 2 161169727 161169727 T A RBMS1 Silent p.A114A 0.11 TCGA-L3-A524-01 2 163123786 163123786 T C IFIH1 Missense_Mutation p.K1001R 0.33 deleterious(0.01) possibly_damaging(0.64) TCGA-L3-A524-01 2 164467770 164467770 C - FIGN Frame_Shift_Del p.G191Dfs*110 0.13 TCGA-L3-A524-01 2 166848426 166848426 C A SCN1A Nonsense_Mutation p.E1787* 0.37 TCGA-L3-A524-01 2 168103787 168103787 C A XIRP2 Missense_Mutation p.T1962K 0.27 benign(0.01) TCGA-L3-A524-01 2 168103788 168103788 A G XIRP2 Silent p.T1962T 0.27 TCGA-L3-A524-01 2 170131679 170131679 C A LRP2 Silent p.V614V 0.51 TCGA-L3-A524-01 2 173832054 173832054 G A RAPGEF4 Missense_Mutation p.D296N 0.47 tolerated(0.46) possibly_damaging(0.848) TCGA-L3-A524-01 2 178098816 178098816 C A NFE2L2 Missense_Mutation p.D77Y 0.39 deleterious(0) probably_damaging(1) TCGA-L3-A524-01 2 179418520 179418520 G A TTN Missense_Mutation p.P29738S 0.22 TCGA-L3-A524-01 2 179730545 179730545 C A CCDC141 Silent p.R891R 0.25 TCGA-L3-A524-01 2 185802269 185802269 T G ZNF804A Missense_Mutation p.L716V 0.20 deleterious(0.03) benign(0.064) TCGA-L3-A524-01 2 185803370 185803370 C T ZNF804A Missense_Mutation p.P1083S 0.20 deleterious(0.01) probably_damaging(0.992) TCGA-L3-A524-01 2 203420555 203420555 T C BMPR2 Missense_Mutation p.F723L 0.19 tolerated(0.75) benign(0.003) TCGA-L3-A524-01 2 20647433 20647433 G T RHOB Silent p.L69L 0.33 TCGA-L3-A524-01 2 21250798 21250798 C A APOB Missense_Mutation p.G657W 0.50 probably_damaging(1) TCGA-L3-A524-01 2 227967503 227967503 A C COL4A4 Splice_Site p.X310_splice 0.23 TCGA-L3-A524-01 2 229890588 229890588 G T PID1 Silent p.A169A 0.39 TCGA-L3-A524-01 2 234677001 234677001 A G UGT1A10 Missense_Mutation p.K404R 0.54 tolerated(1) benign(0.01) TCGA-L3-A524-01 2 236877234 236877234 T A AGAP1 Missense_Mutation p.F538I 0.07 tolerated(0.42) benign(0.194) TCGA-L3-A524-01 2 238688248 238688248 G T LRRFIP1 3'UTR 0.61 TCGA-L3-A524-01 2 240005898 240005898 G C HDAC4 Missense_Mutation p.L824V 0.17 tolerated(0.13) benign(0.005) TCGA-L3-A524-01 2 40401965 40401965 C A SLC8A1 Nonsense_Mutation p.G652* 0.43 TCGA-L3-A524-01 2 42544640 42544640 A G EML4 Silent p.K710K 0.15 TCGA-L3-A524-01 2 48028018 48028018 A G MSH6 Missense_Mutation p.T966A 0.14 tolerated(0.39) benign(0.014) TCGA-L3-A524-01 2 85097784 85097784 G T TRABD2A Missense_Mutation p.F78L 0.27 tolerated(0.07) probably_damaging(0.999) TCGA-L3-A524-01 2 89246839 89246839 G A IGKV1-5 Nonsense_Mutation p.Q111* 0.24 TCGA-L3-A524-01 3 108158658 108158658 C A MYH15 Missense_Mutation p.D1021Y 0.25 deleterious(0.03) benign(0.004) TCGA-L3-A524-01 3 115529229 115529229 T C LSAMP Missense_Mutation p.I318V 0.59 tolerated(0.49) benign(0.001) TCGA-L3-A524-01 3 122001063 122001063 G T CASR Missense_Mutation p.G581V 0.17 deleterious(0) probably_damaging(0.99) TCGA-L3-A524-01 3 128991724 128991724 G A COPG1 Missense_Mutation p.E745K 0.41 deleterious(0.01) benign(0.227) TCGA-L3-A524-01 3 130095228 130095228 C A COL6A5 Silent p.A72A 0.18 TCGA-L3-A524-01 3 130881345 130881345 G T NEK11 Silent p.A352A 0.16 TCGA-L3-A524-01 3 131068616 131068616 T A NEK11 Missense_Mutation p.L645H 0.42 deleterious_low_confidence(0) benign(0.002) TCGA-L3-A524-01 3 134323155 134323155 C T KY Missense_Mutation p.A418T 0.17 tolerated(0.07) possibly_damaging(0.646) TCGA-L3-A524-01 3 135869905 135869905 C G MSL2 3'UTR 0.21 TCGA-L3-A524-01 3 142681478 142681478 T A PAQR9 Missense_Mutation p.D234V 0.59 tolerated(0.07) benign(0.099) TCGA-L3-A524-01 3 146171885 146171885 T C PLSCR2 Silent p.L202L 0.18 TCGA-L3-A524-01 3 147130437 147130437 C A ZIC1 Missense_Mutation p.T372K 0.24 deleterious(0) probably_damaging(0.996) TCGA-L3-A524-01 3 147131250 147131250 C A ZIC1 Missense_Mutation p.T419K 0.11 tolerated(0.98) benign(0.007) TCGA-L3-A524-01 3 151599241 151599241 G T SUCNR1 Missense_Mutation p.D304Y 0.42 deleterious(0) possibly_damaging(0.615) TCGA-L3-A524-01 3 17053201 17053201 A G PLCL2 Missense_Mutation p.H662R 0.70 deleterious(0.03) probably_damaging(0.985) TCGA-L3-A524-01 3 183994799 183994799 G C ECE2 Silent p.G200G 0.79 TCGA-L3-A524-01 3 186459580 186459580 C T KNG1 Silent p.H465H 0.06 TCGA-L3-A524-01 3 24185092 24185092 T A THRB Missense_Mutation p.E213V 0.41 deleterious(0.01) benign(0.009) TCGA-L3-A524-01 3 28454713 28454713 G T ZCWPW2 Missense_Mutation p.V52F 0.59 deleterious(0.03) probably_damaging(0.911) TCGA-L3-A524-01 3 36547306 36547306 G A STAC Silent p.E300E 0.55 TCGA-L3-A524-01 3 39149276 39149276 C A GORASP1 5'UTR 0.72 TCGA-L3-A524-01 3 42949622 42949622 G C ZNF662 Missense_Mutation p.G67R 0.65 tolerated(0.15) probably_damaging(0.986) TCGA-L3-A524-01 3 50140600 50140600 G C RBM5 Splice_Site p.X189_splice 0.41 TCGA-L3-A524-01 3 88188685 88188685 T C ZNF654 Silent p.S75S 0.30 TCGA-L3-A524-01 3 93754271 93754271 G T ARL13B Silent p.L159L 0.22 TCGA-L3-A524-01 4 106155632 106155632 A T TET2 Missense_Mutation p.E178V 0.62 tolerated(0.09) benign(0.025) TCGA-L3-A524-01 4 126371601 126371601 G T FAT4 Missense_Mutation p.G3144C 0.54 probably_damaging(1) TCGA-L3-A524-01 4 134071920 134071920 G A PCDH10 Missense_Mutation p.G209R 0.42 tolerated_low_confidence(0.12) probably_damaging(0.99) TCGA-L3-A524-01 4 176622754 176622754 C A GPM6A Missense_Mutation p.A68S 0.51 tolerated(0.4) benign(0.382) TCGA-L3-A524-01 4 177114609 177114609 C A SPATA4 Nonsense_Mutation p.E115* 0.61 TCGA-L3-A524-01 4 187518837 187518838 TT A FAT1 Frame_Shift_Del p.E4122Dfs*84 0.29 TCGA-L3-A524-01 4 2906797 2906797 T G ADD1 Missense_Mutation p.S490A 0.54 deleterious(0.05) probably_damaging(0.909) TCGA-L3-A524-01 4 44176895 44176895 T C KCTD8 Missense_Mutation p.Q445R 0.22 tolerated(0.06) benign(0.002) TCGA-L3-A524-01 4 46995542 46995542 G A GABRA4 5'UTR 0.52 TCGA-L3-A524-01 4 52862058 52862058 A C LRRC66 Missense_Mutation p.L377R 0.52 deleterious(0) probably_damaging(1) TCGA-L3-A524-01 4 69962597 69962597 G T UGT2B7 Missense_Mutation p.G120V 0.66 tolerated(0.13) benign(0.005) TCGA-L3-A524-01 4 72634112 72634112 G T GC Missense_Mutation p.T75K 0.50 deleterious(0) probably_damaging(0.988) TCGA-L3-A524-01 5 108203520 108203520 T A FER Silent p.L178L 0.25 TCGA-L3-A524-01 5 114916881 114916881 T C TMED7-TICAM2 Missense_Mutation p.T194A 0.30 tolerated_low_confidence(0.15) benign(0.001) TCGA-L3-A524-01 5 118533563 118533563 G A DMXL1 Missense_Mutation p.A2553T 0.14 tolerated(0.2) benign(0.043) TCGA-L3-A524-01 5 120022397 120022397 C A PRR16 Missense_Mutation p.T280N 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-L3-A524-01 5 1217032 1217032 C G SLC6A19 Missense_Mutation p.T382S 0.52 tolerated(0.41) benign(0.052) TCGA-L3-A524-01 5 134871133 134871133 T A NEUROG1 Missense_Mutation p.E83V 0.30 deleterious(0) probably_damaging(0.96) TCGA-L3-A524-01 5 13885190 13885190 T C DNAH5 Missense_Mutation p.H964R 0.15 benign(0.227) TCGA-L3-A524-01 5 140389224 140389224 G T PCDHAC1 Missense_Mutation p.G865V 0.39 deleterious(0.01) benign(0.206) TCGA-L3-A524-01 5 140573155 140573155 C G PCDHB10 Missense_Mutation p.P344A 0.21 tolerated_low_confidence(1) benign(0) TCGA-L3-A524-01 5 146773494 146773494 A G DPYSL3 3'UTR 0.32 TCGA-L3-A524-01 5 170819954 170819954 G A NPM1 Missense_Mutation p.D166N 0.41 tolerated(0.06) benign(0.006) TCGA-L3-A524-01 5 172745094 172745094 G T STC2 Missense_Mutation p.P222H 0.45 tolerated(0.05) benign(0.235) TCGA-L3-A524-01 5 176943964 176943964 C A DDX41 5'UTR 0.14 TCGA-L3-A524-01 5 180582653 180582653 G A OR2V2 Silent p.K237K 0.19 TCGA-L3-A524-01 5 41853547 41853547 C T OXCT1 Missense_Mutation p.E130K 0.14 tolerated(0.13) benign(0.085) TCGA-L3-A524-01 5 432963 432963 A C AHRR Missense_Mutation p.Q360P 0.09 tolerated(0.18) benign(0.043) TCGA-L3-A524-01 5 5209343 5209343 T A ADAMTS16 Missense_Mutation p.M530K 0.65 tolerated(0.97) benign(0.063) TCGA-L3-A524-01 5 5464433 5464433 A T KIAA0947 Silent p.P1662P 0.60 TCGA-L3-A524-01 5 54763950 54763950 A C PPAP2A Missense_Mutation p.Y81D 0.22 deleterious(0.01) possibly_damaging(0.851) TCGA-L3-A524-01 5 64881996 64881996 G - PPWD1 Frame_Shift_Del p.V596* 0.24 TCGA-L3-A524-01 5 64956546 64956546 G C TRAPPC13 Missense_Mutation p.R240T 0.13 tolerated(0.58) benign(0.009) TCGA-L3-A524-01 5 89990317 89990317 A C GPR98 Missense_Mutation p.I2582L 0.23 possibly_damaging(0.456) TCGA-L3-A524-01 6 10791957 10791957 G C MAK Missense_Mutation p.P423A 0.48 deleterious(0.03) possibly_damaging(0.493) TCGA-L3-A524-01 6 107955025 107955025 C A SOBP Missense_Mutation p.P326Q 0.31 deleterious(0.04) possibly_damaging(0.889) TCGA-L3-A524-01 6 129649468 129649468 C A LAMA2 Missense_Mutation p.R1408S 0.31 tolerated(0.13) benign(0.021) TCGA-L3-A524-01 6 133052522 133052522 G T VNN3 Intron 0.44 TCGA-L3-A524-01 6 133072515 133072515 G A VNN2 Silent p.Y323Y 0.26 TCGA-L3-A524-01 6 133073626 133073626 G T VNN2 Missense_Mutation p.T267K 0.30 deleterious(0.04) benign(0.19) TCGA-L3-A524-01 6 139186317 139186317 T C ECT2L Splice_Site p.X492_splice 0.38 TCGA-L3-A524-01 6 143092943 143092943 C A HIVEP2 Missense_Mutation p.S978I 0.27 deleterious(0) probably_damaging(0.997) TCGA-L3-A524-01 6 146126893 146126893 C A FBXO30 Missense_Mutation p.D217Y 0.27 deleterious(0.02) benign(0.109) TCGA-L3-A524-01 6 147124468 147124468 T C ADGB Intron 0.19 TCGA-L3-A524-01 6 147124469 147124469 G T ADGB Intron 0.20 TCGA-L3-A524-01 6 152563407 152563407 C G SYNE1 Missense_Mutation p.E6621Q 0.13 benign(0.017) TCGA-L3-A524-01 6 158066820 158066820 C T ZDHHC14 Silent p.L268L 0.24 TCGA-L3-A524-01 6 160875485 160875485 G T SLC22A3 3'Flank 0.33 TCGA-L3-A524-01 6 160875486 160875486 G T SLC22A3 3'Flank 0.36 TCGA-L3-A524-01 6 165706863 165706863 C G C6orf118 Intron 0.29 TCGA-L3-A524-01 6 167708039 167708039 C A UNC93A Missense_Mutation p.T41K 0.35 deleterious(0.01) benign(0.41) TCGA-L3-A524-01 6 170072373 170072373 T A WDR27 Missense_Mutation p.E103D 0.14 deleterious(0.03) possibly_damaging(0.755) TCGA-L3-A524-01 6 18148143 18148143 T C TPMT Silent p.L48L 0.47 TCGA-L3-A524-01 6 24472845 24472845 C G GPLD1 Missense_Mutation p.Q170H 0.22 tolerated(0.09) benign(0.109) TCGA-L3-A524-01 6 29627117 29627117 C A MOG Missense_Mutation p.P37Q 0.17 deleterious(0.02) possibly_damaging(0.544) TCGA-L3-A524-01 6 29912275 29912275 A T HLA-A Splice_Site p.X299_splice 0.14 TCGA-L3-A524-01 6 31686896 31686896 G T LY6G6C Missense_Mutation p.L119I 0.49 deleterious_low_confidence(0.03) unknown(0) TCGA-L3-A524-01 6 43106997 43106997 G T PTK7 Missense_Mutation p.V504F 0.19 deleterious(0) probably_damaging(0.998) TCGA-L3-A524-01 6 51910879 51910879 C G PKHD1 Missense_Mutation p.D839H 0.20 deleterious(0.01) possibly_damaging(0.897) TCGA-L3-A524-01 6 66205148 66205148 G T EYS Missense_Mutation p.D52E 0.17 tolerated_low_confidence(0.3) benign(0.003) TCGA-L3-A524-01 6 71562361 71562361 A T SMAP1 Silent p.P261P 0.21 TCGA-L3-A524-01 6 76712652 76712652 G T IMPG1 Missense_Mutation p.A425E 0.24 tolerated(0.98) benign(0.004) TCGA-L3-A524-01 6 88853474 88853474 G T CNR1 3'UTR 0.25 TCGA-L3-A524-01 6 91257105 91257105 C A MAP3K7 Missense_Mutation p.S361I 0.29 tolerated(0.16) benign(0.025) TCGA-L3-A524-01 6 97063590 97063590 C A FHL5 Missense_Mutation p.T266N 0.29 tolerated(0.07) probably_damaging(0.976) TCGA-L3-A524-01 6 97247308 97247308 C A GPR63 Missense_Mutation p.L100F 0.28 tolerated(0.72) benign(0.005) TCGA-L3-A524-01 7 100358070 100358070 T G ZAN Silent p.G1251G 0.32 TCGA-L3-A524-01 7 103113162 103113162 C A RELN 3'UTR 0.35 TCGA-L3-A524-01 7 103113163 103113163 A T RELN 3'UTR 0.32 TCGA-L3-A524-01 7 103474058 103474058 C A RELN Silent p.V133V 0.28 TCGA-L3-A524-01 7 114066583 114066583 C G FOXP2 Missense_Mutation p.A6G 0.17 tolerated_low_confidence(0.25) possibly_damaging(0.531) TCGA-L3-A524-01 7 123256532 123256532 T A ASB15 Missense_Mutation p.L92H 0.40 deleterious(0) probably_damaging(0.987) TCGA-L3-A524-01 7 127014966 127014966 C T ZNF800 Missense_Mutation p.A142T 0.31 deleterious(0) probably_damaging(0.984) TCGA-L3-A524-01 7 128852344 128852344 G A SMO 3'UTR 0.28 TCGA-L3-A524-01 7 130002827 130002827 C A CPA5 Missense_Mutation p.H247N 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-L3-A524-01 7 142013247 142013247 G C TRBV4-1 Missense_Mutation p.M34I 0.46 tolerated(0.18) benign(0.181) TCGA-L3-A524-01 7 142749723 142749723 A G OR6V1 Missense_Mutation p.M96V 0.18 tolerated(0.09) benign(0.016) TCGA-L3-A524-01 7 147926850 147926850 C T CNTNAP2 Silent p.H1120H 0.19 TCGA-L3-A524-01 7 149318432 149318432 C A ZNF767 RNA 0.14 TCGA-L3-A524-01 7 149486347 149486347 T C SSPO RNA 0.28 TCGA-L3-A524-01 7 149505658 149505658 A C SSPO RNA 0.20 TCGA-L3-A524-01 7 32609713 32609713 G C AVL9 Missense_Mutation p.A433P 0.21 deleterious(0) probably_damaging(1) TCGA-L3-A524-01 7 36934523 36934523 C G ELMO1 Missense_Mutation p.E513Q 0.43 tolerated(0.13) probably_damaging(0.995) TCGA-L3-A524-01 7 44080555 44080555 C T DBNL 5'Flank 0.31 TCGA-L3-A524-01 7 5413746 5413746 C T TNRC18 Missense_Mutation p.E1057K 0.18 probably_damaging(0.994) TCGA-L3-A524-01 7 56051534 56051534 A G GBAS Missense_Mutation p.I186M 0.20 deleterious(0.03) probably_damaging(0.916) TCGA-L3-A524-01 7 56082865 56082865 C T PSPH Splice_Site p.X141_splice 0.21 TCGA-L3-A524-01 7 63726786 63726786 A C ZNF679 Silent p.R259R 0.32 TCGA-L3-A524-01 7 63981768 63981768 A C ZNF680 Missense_Mutation p.I455S 0.11 deleterious(0.01) probably_damaging(0.932) TCGA-L3-A524-01 7 73008369 73008369 C A MLXIPL Intron 0.37 TCGA-L3-A524-01 7 92147212 92147212 T C PEX1 Missense_Mutation p.Q206R 0.37 tolerated(0.05) benign(0.13) TCGA-L3-A524-01 7 99564605 99564605 A G AZGP1 3'UTR 0.38 TCGA-L3-A524-01 8 120118169 120118169 C T COLEC10 Silent p.A191A 0.06 TCGA-L3-A524-01 8 134251284 134251284 C A NDRG1 Missense_Mutation p.R341L 0.53 deleterious(0.04) probably_damaging(0.998) TCGA-L3-A524-01 8 144398238 144398238 G A TOP1MT Silent p.A463A 0.17 TCGA-L3-A524-01 8 21840222 21840222 G A XPO7 Silent p.P392P 0.42 TCGA-L3-A524-01 8 38001782 38001782 G T STAR 3'UTR 0.50 TCGA-L3-A524-01 8 38103416 38103416 A G DDHD2 Silent p.L335L 0.67 TCGA-L3-A524-01 8 77765182 77765182 C A ZFHX4 Missense_Mutation p.P2009T 0.78 benign(0.01) TCGA-L3-A524-01 8 81599561 81599561 C G ZNF704 Missense_Mutation p.S153T 0.12 tolerated(0.39) possibly_damaging(0.574) TCGA-L3-A524-01 8 86242031 86242031 G T CA1 Missense_Mutation p.L186I 0.54 deleterious(0.02) benign(0.386) TCGA-L3-A524-01 8 87680389 87680389 G T CNGB3 Silent p.P167P 0.50 TCGA-L3-A524-01 8 98788316 98788316 C G LAPTM4B Missense_Mutation p.L118V 0.22 deleterious(0.04) benign(0.247) TCGA-L3-A524-01 9 107298695 107298695 C G OR13C3 Missense_Mutation p.G134R 0.18 deleterious(0) probably_damaging(0.937) TCGA-L3-A524-01 9 107360840 107360840 C A OR13C5 Missense_Mutation p.R285S 0.51 deleterious(0.02) benign(0.021) TCGA-L3-A524-01 9 107367594 107367594 C G OR13C2 Missense_Mutation p.L105F 0.18 tolerated(0.84) benign(0.023) TCGA-L3-A524-01 9 137803028 137803028 C A FCN1 Missense_Mutation p.E228D 0.17 deleterious(0.01) possibly_damaging(0.865) TCGA-L3-A524-01 9 14868827 14868827 G T FREM1 Missense_Mutation p.A50D 0.60 tolerated(0.64) benign(0.006) TCGA-L3-A524-01 9 20781852 20781852 G T FOCAD Missense_Mutation p.G374V 0.44 tolerated(0.1) possibly_damaging(0.642) TCGA-L3-A524-01 9 22451389 22451389 A T DMRTA1 Missense_Mutation p.I332F 0.42 deleterious(0) probably_damaging(0.998) TCGA-L3-A524-01 9 32784247 32784247 C A TMEM215 Silent p.V22V 0.15 TCGA-L3-A524-01 9 35842560 35842560 T C TMEM8B Missense_Mutation p.L42P 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-L3-A524-01 9 37745037 37745037 A T FRMPD1 Missense_Mutation p.E1003V 0.15 deleterious_low_confidence(0) possibly_damaging(0.556) TCGA-L3-A524-01 9 71509552 71509552 C T PIP5K1B Missense_Mutation p.R257W 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-L3-A524-01 X 100531499 100531499 C A TAF7L Nonsense_Mutation p.E323* 0.25 TCGA-L3-A524-01 X 100537327 100537327 A T TAF7L Missense_Mutation p.W218R 0.23 deleterious(0) probably_damaging(0.999) TCGA-L3-A524-01 X 101097759 101097759 C A NXF5 Missense_Mutation p.R2S 0.25 tolerated(0.24) benign(0.002) TCGA-L3-A524-01 X 101804971 101804971 A T NXF4 RNA 0.18 TCGA-L3-A524-01 X 101909742 101909742 C A GPRASP1 Missense_Mutation p.H301N 0.27 tolerated(0.42) benign(0.014) TCGA-L3-A524-01 X 102471505 102471505 A G BEX4 3'UTR 0.38 TCGA-L3-A524-01 X 103495297 103495297 G T ESX1 Missense_Mutation p.P278H 0.50 deleterious(0.02) unknown(0) TCGA-L3-A524-01 X 105153126 105153126 C G NRK Missense_Mutation p.S499C 0.21 deleterious(0.01) benign(0.224) TCGA-L3-A524-01 X 106066557 106066557 T A TBC1D8B Missense_Mutation p.Y230N 0.04 tolerated(0.15) benign(0.097) TCGA-L3-A524-01 X 106184682 106184682 A G MORC4 3'UTR 0.26 TCGA-L3-A524-01 X 106884202 106884202 C T PRPS1 Missense_Mutation p.T126I 0.12 deleterious(0) probably_damaging(0.959) TCGA-L3-A524-01 X 107335050 107335050 C A ATG4A 5'UTR 0.33 TCGA-L3-A524-01 X 109416589 109416589 G A TMEM164 Silent p.G268G 0.10 TCGA-L3-A524-01 X 109416590 109416590 A G TMEM164 Missense_Mutation p.K269E 0.11 deleterious(0) probably_damaging(1) TCGA-L3-A524-01 X 110492278 110492278 A C CAPN6 Missense_Mutation p.F389C 0.25 deleterious(0) probably_damaging(0.963) TCGA-L3-A524-01 X 11187805 11187805 C A ARHGAP6 Splice_Site p.X544_splice 0.39 TCGA-L3-A524-01 X 118676558 118676558 C T CXorf56 Splice_Site p.X142_splice 0.31 TCGA-L3-A524-01 X 119694168 119694168 A T CUL4B Missense_Mutation p.F127Y 0.28 tolerated_low_confidence(0.08) benign(0.142) TCGA-L3-A524-01 X 123775739 123775739 G T TENM1 Missense_Mutation p.P660H 0.29 tolerated(0.07) possibly_damaging(0.497) TCGA-L3-A524-01 X 128926806 128926806 C A SASH3 Silent p.G265G 0.46 TCGA-L3-A524-01 X 128926807 128926807 C A SASH3 Missense_Mutation p.L266M 0.47 deleterious(0.03) probably_damaging(1) TCGA-L3-A524-01 X 129149395 129149395 G A BCORL1 Missense_Mutation p.G883R 0.28 benign(0.111) TCGA-L3-A524-01 X 130419326 130419326 T G IGSF1 Missense_Mutation p.K165T 0.04 deleterious(0.01) probably_damaging(0.999) TCGA-L3-A524-01 X 135618346 135618346 A C VGLL1 Missense_Mutation p.Q56P 0.24 deleterious(0) possibly_damaging(0.827) TCGA-L3-A524-01 X 135795502 135795502 T C ARHGEF6 Missense_Mutation p.K254E 0.21 deleterious(0.03) benign(0.008) TCGA-L3-A524-01 X 140984641 140984641 C A MAGEC3 Intron 0.50 TCGA-L3-A524-01 X 148568575 148568575 G A IDS Missense_Mutation p.A143V 0.30 tolerated(0.12) benign(0.362) TCGA-L3-A524-01 X 148586650 148586650 G T IDS Silent p.T6T 0.44 TCGA-L3-A524-01 X 149013882 149013882 G T MAGEA8 Missense_Mutation p.R279M 0.12 deleterious(0) probably_damaging(0.989) TCGA-L3-A524-01 X 151092466 151092466 C A MAGEA4 Silent p.L110L 0.40 TCGA-L3-A524-01 X 151093183 151093183 A T MAGEA4 3'UTR 0.08 TCGA-L3-A524-01 X 151284151 151284151 A G RP11-1007I13.4 Splice_Site 0.20 TCGA-L3-A524-01 X 152482592 152482592 A G MAGEA1 Missense_Mutation p.F140S 0.10 deleterious(0) probably_damaging(1) TCGA-L3-A524-01 X 153539481 153539481 G T TKTL1 Missense_Mutation p.D188Y 0.22 deleterious(0) probably_damaging(0.998) TCGA-L3-A524-01 X 154159880 154159880 T C F8 Missense_Mutation p.S729G 0.32 deleterious(0.04) benign(0.015) TCGA-L3-A524-01 X 154261704 154261704 C G FUNDC2 Missense_Mutation p.L54V 0.27 tolerated(0.11) benign(0.167) TCGA-L3-A524-01 X 15609835 15609835 C G ACE2 Splice_Site p.X195_splice 0.30 TCGA-L3-A524-01 X 19425392 19425392 C T MAP3K15 Silent p.K586K 0.15 TCGA-L3-A524-01 X 23731306 23731306 C A ACOT9 Missense_Mutation p.C203F 0.35 tolerated(0.72) benign(0) TCGA-L3-A524-01 X 2779603 2779603 C T GYG2 Missense_Mutation p.A324V 0.31 tolerated(0.36) benign(0.001) TCGA-L3-A524-01 X 30578209 30578209 G T CXorf21 Silent p.P88P 0.20 TCGA-L3-A524-01 X 31089713 31089713 G - FTHL17 Frame_Shift_Del p.Q120Sfs*34 0.21 TCGA-L3-A524-01 X 32613934 32613934 C T DMD Silent p.V514V 0.32 TCGA-L3-A524-01 X 37027378 37027378 C A FAM47C Missense_Mutation p.P299T 0.29 tolerated(0.07) possibly_damaging(0.803) TCGA-L3-A524-01 X 37027379 37027379 C A FAM47C Missense_Mutation p.P299H 0.30 deleterious(0) probably_damaging(0.95) TCGA-L3-A524-01 X 43661460 43661460 G T MAOB Missense_Mutation p.N145K 0.39 tolerated(1) benign(0.002) TCGA-L3-A524-01 X 47069325 47069325 A G UBA1 Splice_Site p.X668_splice 0.30 TCGA-L3-A524-01 X 47919519 47919519 T C ZNF630 Silent p.E104E 0.12 TCGA-L3-A524-01 X 48688095 48688095 G A ERAS Missense_Mutation p.V188M 0.29 deleterious(0) probably_damaging(0.974) TCGA-L3-A524-01 X 48932546 48932546 G T WDR45 Missense_Mutation p.H334Q 0.22 deleterious(0.04) possibly_damaging(0.565) TCGA-L3-A524-01 X 50659072 50659072 G C BMP15 Missense_Mutation p.S215T 0.25 tolerated(0.28) benign(0.022) TCGA-L3-A524-01 X 54114293 54114293 C T FAM120C Nonsense_Mutation p.W844* 0.17 TCGA-L3-A524-01 X 54569758 54569758 T C GNL3L Missense_Mutation p.L170P 0.37 deleterious(0) possibly_damaging(0.83) TCGA-L3-A524-01 X 55020349 55020349 C T PFKFB1 Missense_Mutation p.R31K 0.25 probably_damaging(0.996) TCGA-L3-A524-01 X 5811443 5811443 G T NLGN4X Silent p.P622P 0.30 TCGA-L3-A524-01 X 64722663 64722663 C A ZC3H12B Silent p.A695A 0.13 TCGA-L3-A524-01 X 70836697 70836697 G T CXCR3 Missense_Mutation p.Q256K 0.29 tolerated(0.93) benign(0.012) TCGA-L3-A524-01 X 84510296 84510296 T C ZNF711 Silent p.D37D 0.16 TCGA-L3-A524-01 X 9841736 9841736 T C SHROOM2 Silent p.A70A 0.21 TCGA-L3-A524-01 X 99890662 99890662 C A TSPAN6 Missense_Mutation p.A57S 0.19 tolerated(1) benign(0.012) TCGA-L3-A524-01 X 99890663 99890663 C A TSPAN6 Missense_Mutation p.K56N 0.19 tolerated(1) benign(0.001) TCGA-LA-A446-01 10 104592285 104592285 C T CYP17A1 Silent p.K374K 0.17 TCGA-LA-A446-01 10 124389482 124389482 G T DMBT1 Missense_Mutation p.R1803L 0.15 tolerated(0.2) probably_damaging(0.95) TCGA-LA-A446-01 10 127408404 127408404 G C EDRF1 Missense_Mutation p.E10Q 0.37 deleterious_low_confidence(0.03) unknown(0) TCGA-LA-A446-01 10 298461 298461 G T ZMYND11 3'UTR 0.56 TCGA-LA-A446-01 10 402433 402433 G A DIP2C Missense_Mutation p.S973L 0.22 tolerated(0.13) benign(0.001) TCGA-LA-A446-01 10 43619252 43619252 G C RET Missense_Mutation p.E979Q 0.15 tolerated(0.18) probably_damaging(0.989) TCGA-LA-A446-01 10 49812868 49812868 G C ARHGAP22 5'UTR 0.18 TCGA-LA-A446-01 10 58118708 58118708 C A ZWINT Nonsense_Mutation p.E161* 0.12 TCGA-LA-A446-01 10 6063567 6063567 C G IL2RA Missense_Mutation p.V153L 0.30 tolerated(0.71) benign(0.006) TCGA-LA-A446-01 10 72541737 72541737 T A TBATA Missense_Mutation p.R33W 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.525) TCGA-LA-A446-01 10 75289316 75289316 G C USP54 Intron 0.14 TCGA-LA-A446-01 10 85981898 85981898 C G LRIT2 Silent p.V477V 0.21 TCGA-LA-A446-01 10 99426197 99426197 C T PI4K2A Missense_Mutation p.P333S 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-LA-A446-01 11 100169951 100169951 C A CNTN5 Missense_Mutation p.P815T 0.12 deleterious(0) possibly_damaging(0.803) TCGA-LA-A446-01 11 103157023 103157023 G A DYNC2H1 Missense_Mutation p.D3651N 0.16 benign(0.192) TCGA-LA-A446-01 11 121367634 121367634 C G SORL1 Missense_Mutation p.S272C 0.36 tolerated(0.06) benign(0.376) TCGA-LA-A446-01 11 123755271 123755271 C T TMEM225 Missense_Mutation p.G85D 0.16 deleterious(0) probably_damaging(0.989) TCGA-LA-A446-01 11 124294096 124294096 G A OR8B4 Silent p.I224I 0.14 TCGA-LA-A446-01 11 124508563 124508563 C T SIAE Missense_Mutation p.E399K 0.24 tolerated(0.05) benign(0.094) TCGA-LA-A446-01 11 26664852 26664852 G A ANO3 Missense_Mutation p.R800K 0.24 deleterious(0) probably_damaging(0.972) TCGA-LA-A446-01 11 31349738 31349738 T A DCDC1 Missense_Mutation p.Q30H 0.14 deleterious_low_confidence(0.04) benign(0.006) TCGA-LA-A446-01 11 36614759 36614759 G T RAG2 Missense_Mutation p.S320R 0.30 deleterious(0.01) benign(0.211) TCGA-LA-A446-01 11 4388847 4388847 C G OR52B4 Missense_Mutation p.V227L 0.09 deleterious(0.05) benign(0.077) TCGA-LA-A446-01 11 44289172 44289172 C A ALX4 Missense_Mutation p.V260F 0.23 deleterious(0) probably_damaging(0.997) TCGA-LA-A446-01 11 4903175 4903175 C T OR51T1 Missense_Mutation p.L43F 0.14 deleterious(0) probably_damaging(0.994) TCGA-LA-A446-01 11 49207373 49207373 A G FOLH1 Missense_Mutation p.V225A 0.24 deleterious(0) benign(0.404) TCGA-LA-A446-01 11 4968107 4968107 A T OR51A4 Nonsense_Mutation p.L75* 0.34 TCGA-LA-A446-01 11 57256865 57256865 C A SLC43A1 Missense_Mutation p.R398S 0.26 tolerated(0.38) benign(0.018) TCGA-LA-A446-01 11 608743 608743 C A PHRF1 Missense_Mutation p.P1095H 0.64 deleterious(0.01) probably_damaging(0.979) TCGA-LA-A446-01 11 64794993 64794993 C G SNX15 5'UTR 0.13 TCGA-LA-A446-01 11 7021380 7021380 G T ZNF214 Missense_Mutation p.H512N 0.15 tolerated(0.71) probably_damaging(0.942) TCGA-LA-A446-01 11 7021878 7021878 G A ZNF214 Missense_Mutation p.H346Y 0.15 tolerated(1) benign(0.426) TCGA-LA-A446-01 11 74082848 74082848 G C PGM2L1 Nonsense_Mutation p.Y98* 0.37 TCGA-LA-A446-01 11 82878476 82878476 C G PCF11 Missense_Mutation p.S674C 0.38 deleterious(0) probably_damaging(0.962) TCGA-LA-A446-01 11 82936084 82936084 A G ANKRD42 Silent p.L230L 0.32 TCGA-LA-A446-01 11 92086080 92086080 G T FAT3 Missense_Mutation p.V268L 0.11 benign(0.045) TCGA-LA-A446-01 11 93822028 93822028 G A HEPHL1 Missense_Mutation p.G730R 0.23 tolerated(0.53) benign(0.028) TCGA-LA-A446-01 11 94113840 94113840 G A GPR83 Silent p.I249I 0.30 TCGA-LA-A446-01 11 94353007 94353007 C T PIWIL4 Silent p.P750P 0.28 TCGA-LA-A446-01 12 100502173 100502173 C A UHRF1BP1L Silent p.A66A 0.08 TCGA-LA-A446-01 12 101560287 101560287 A G SLC5A8 Missense_Mutation p.I504T 0.32 tolerated(0.69) benign(0.001) TCGA-LA-A446-01 12 111342415 111342415 G T CCDC63 Missense_Mutation p.D456Y 0.37 deleterious(0) probably_damaging(0.99) TCGA-LA-A446-01 12 111731264 111731264 A T CUX2 Missense_Mutation p.T151S 0.27 tolerated(0.3) benign(0.001) TCGA-LA-A446-01 12 11214621 11214621 G A TAS2R46 Silent p.I91I 0.23 TCGA-LA-A446-01 12 118517168 118517168 C G VSIG10 Missense_Mutation p.S303T 0.09 tolerated(0.38) benign(0.145) TCGA-LA-A446-01 12 123444422 123444422 C A ABCB9 Missense_Mutation p.V121L 0.26 tolerated(0.16) benign(0.002) TCGA-LA-A446-01 12 1740547 1740547 G T WNT5B Silent p.T9T 0.28 TCGA-LA-A446-01 12 1741857 1741857 G T WNT5B Missense_Mutation p.E38D 0.26 deleterious(0.03) probably_damaging(0.978) TCGA-LA-A446-01 12 1943914 1943914 G A LRTM2 3'UTR 0.21 TCGA-LA-A446-01 12 20858970 20858970 G T SLCO1C1 Missense_Mutation p.G120V 0.29 deleterious(0) probably_damaging(0.93) TCGA-LA-A446-01 12 21200071 21200071 A G SLCO1B7 Missense_Mutation p.Y305C 0.23 deleterious(0) possibly_damaging(0.605) TCGA-LA-A446-01 12 39967517 39967517 C T ABCD2 Splice_Site p.X668_splice 0.21 TCGA-LA-A446-01 12 48183656 48183656 G A HDAC7 Silent p.A677A 0.27 TCGA-LA-A446-01 12 49230513 49230513 G T DDX23 Missense_Mutation p.Q359K 0.29 tolerated(0.08) benign(0.015) TCGA-LA-A446-01 12 49719553 49719553 G T TROAP Missense_Mutation p.L173F 0.16 deleterious(0.01) probably_damaging(0.954) TCGA-LA-A446-01 12 49719554 49719554 G T TROAP Missense_Mutation p.A174S 0.16 tolerated(0.06) probably_damaging(0.956) TCGA-LA-A446-01 12 55028610 55028610 G T LACRT Missense_Mutation p.L6I 0.26 deleterious_low_confidence(0) unknown(0) TCGA-LA-A446-01 12 55523857 55523857 T C OR9K2 Missense_Mutation p.I102T 0.34 deleterious(0) benign(0.128) TCGA-LA-A446-01 12 55641204 55641204 A T OR6C74 Missense_Mutation p.T45S 0.21 tolerated_low_confidence(0.14) benign(0.002) TCGA-LA-A446-01 12 57642900 57642900 G A STAC3 Silent p.N86N 0.24 TCGA-LA-A446-01 12 66786455 66786455 A T GRIP1 Splice_Site p.X705_splice 0.18 TCGA-LA-A446-01 12 73046829 73046829 G T TRHDE Silent p.V914V 0.21 TCGA-LA-A446-01 12 73050789 73050789 G A TRHDE Splice_Site p.X977_splice 0.15 TCGA-LA-A446-01 12 7527270 7527270 G C CD163L1 Silent p.T1059T 0.32 TCGA-LA-A446-01 12 7585200 7585200 C A CD163L1 Missense_Mutation p.C193F 0.25 deleterious(0) probably_damaging(0.99) TCGA-LA-A446-01 12 7982600 7982600 C G SLC2A14 Missense_Mutation p.R115P 0.25 deleterious(0.04) probably_damaging(0.96) TCGA-LA-A446-01 12 85441149 85441149 G T LRRIQ1 Missense_Mutation p.R193S 0.28 tolerated(0.1) benign(0.012) TCGA-LA-A446-01 12 8758009 8758009 G C AICDA Missense_Mutation p.R77G 0.29 deleterious(0.01) possibly_damaging(0.718) TCGA-LA-A446-01 12 93101396 93101396 T A C12orf74 Intron 0.18 TCGA-LA-A446-01 12 96310943 96310943 C A CCDC38 Missense_Mutation p.G90W 0.16 deleterious(0) probably_damaging(1) TCGA-LA-A446-01 12 96422864 96422864 T C LTA4H Missense_Mutation p.M87V 0.31 deleterious(0) benign(0.001) TCGA-LA-A446-01 13 100953849 100953849 T A PCCA Missense_Mutation p.Y401N 0.29 tolerated(0.06) probably_damaging(0.951) TCGA-LA-A446-01 13 102375212 102375212 C - FGF14 Frame_Shift_Del p.G243Afs*23 0.19 TCGA-LA-A446-01 13 109445990 109445990 T A MYO16 Splice_Site p.X225_splice 0.29 TCGA-LA-A446-01 13 29001925 29001925 C A FLT1 Missense_Mutation p.V414L 0.22 tolerated(1) benign(0.003) TCGA-LA-A446-01 13 78477639 78477639 C A EDNRB Missense_Mutation p.S286I 0.11 deleterious(0) probably_damaging(0.999) TCGA-LA-A446-01 13 92560290 92560290 T A GPC5 Missense_Mutation p.D460E 0.24 tolerated(0.06) probably_damaging(0.996) TCGA-LA-A446-01 14 19553429 19553429 G T POTEG Missense_Mutation p.A5S 0.14 deleterious_low_confidence(0) benign(0.013) TCGA-LA-A446-01 14 23945519 23945519 A T NGDN Missense_Mutation p.I206F 0.29 deleterious(0) probably_damaging(0.981) TCGA-LA-A446-01 14 38679471 38679471 G A SSTR1 Missense_Mutation p.V293I 0.33 tolerated(0.18) probably_damaging(0.935) TCGA-LA-A446-01 14 53513647 53513647 C A DDHD1 Missense_Mutation p.D848Y 0.32 deleterious(0) probably_damaging(1) TCGA-LA-A446-01 14 58606133 58606133 C A C14orf37 Splice_Site 0.48 TCGA-LA-A446-01 14 73029242 73029242 C A RGS6 3'Flank 0.65 TCGA-LA-A446-01 14 76964573 76964573 G A ESRRB Silent p.E358E 0.51 TCGA-LA-A446-01 14 88707095 88707095 C G KCNK10 Missense_Mutation p.D158H 0.39 deleterious(0) probably_damaging(0.998) TCGA-LA-A446-01 14 94964156 94964156 G T SERPINA12 Silent p.I193I 0.28 TCGA-LA-A446-01 14 95669597 95669597 A C CLMN Missense_Mutation p.L697V 0.44 deleterious(0) probably_damaging(0.997) TCGA-LA-A446-01 15 23687620 23687620 C T GOLGA6L2 Silent p.L209L 0.15 TCGA-LA-A446-01 15 25332810 25332810 G T SNORD116-20 RNA 0.05 TCGA-LA-A446-01 15 25351735 25351735 C T SNORD116-29 RNA 0.27 TCGA-LA-A446-01 15 25451309 25451309 G T SNORD115-22 5'Flank 0.31 TCGA-LA-A446-01 15 31352837 31352837 T C TRPM1 Silent p.V408V 0.24 TCGA-LA-A446-01 15 32460288 32460288 A G CHRNA7 Missense_Mutation p.S409G 0.13 tolerated(0.28) benign(0) TCGA-LA-A446-01 15 43819523 43819523 C T MAP1A Missense_Mutation p.P1951L 0.29 probably_damaging(0.909) TCGA-LA-A446-01 15 44630479 44630479 G T CASC4 Nonsense_Mutation p.E256* 0.17 TCGA-LA-A446-01 15 50294401 50294401 G A ATP8B4 Missense_Mutation p.S152L 0.44 deleterious(0) probably_damaging(0.999) TCGA-LA-A446-01 15 52901180 52901180 C A FAM214A Missense_Mutation p.C644F 0.28 tolerated(0.79) benign(0.002) TCGA-LA-A446-01 15 69222923 69222923 G T SPESP1 5'UTR 0.21 TCGA-LA-A446-01 15 73007720 73007720 C A BBS4 Missense_Mutation p.N103K 0.18 deleterious(0) probably_damaging(0.994) TCGA-LA-A446-01 15 75119180 75119180 G C CPLX3 Missense_Mutation p.E46Q 0.34 tolerated(0.15) benign(0.067) TCGA-LA-A446-01 15 75580635 75580635 C T GOLGA6D Missense_Mutation p.S165F 0.19 deleterious(0) benign(0.081) TCGA-LA-A446-01 15 80464488 80464488 A T FAH Intron 0.24 TCGA-LA-A446-01 15 84237317 84237317 C T SH3GL3 Missense_Mutation p.S75L 0.28 deleterious(0.03) possibly_damaging(0.853) TCGA-LA-A446-01 15 90145128 90145128 A G TICRR Missense_Mutation p.S830G 0.25 tolerated(0.08) benign(0.033) TCGA-LA-A446-01 16 2106207 2106207 C T TSC2 Silent p.L204L 0.18 TCGA-LA-A446-01 16 2256659 2256659 A T MLST8 Missense_Mutation p.R115W 0.19 deleterious(0) probably_damaging(0.99) TCGA-LA-A446-01 16 31488680 31488680 G T TGFB1I1 Missense_Mutation p.R390L 0.21 tolerated(0.34) benign(0.09) TCGA-LA-A446-01 16 48180296 48180296 G T ABCC12 Missense_Mutation p.Q14K 0.29 tolerated(0.94) benign(0.001) TCGA-LA-A446-01 16 53686866 53686866 T A RPGRIP1L Missense_Mutation p.Q578L 0.31 tolerated(0.11) benign(0.24) TCGA-LA-A446-01 16 66613774 66613774 T C CMTM2 Silent p.A88A 0.34 TCGA-LA-A446-01 16 67986185 67986185 C A SLC12A4 Silent p.V275V 0.22 TCGA-LA-A446-01 16 77401536 77401536 G T ADAMTS18 Missense_Mutation p.P194T 0.28 tolerated(0.17) possibly_damaging(0.665) TCGA-LA-A446-01 16 77859316 77859316 G A VAT1L Silent p.R179R 0.33 TCGA-LA-A446-01 16 84229540 84229548 TGGGCTGCC - ADAD2 In_Frame_Del p.G474_L476del 0.24 TCGA-LA-A446-01 16 9857151 9857151 C A GRIN2A Missense_Mutation p.R1417L 0.16 tolerated(0.05) probably_damaging(0.974) TCGA-LA-A446-01 17 17696329 17696329 G C RAI1 Missense_Mutation p.E23Q 0.32 deleterious(0.01) possibly_damaging(0.827) TCGA-LA-A446-01 17 18541684 18541684 G T TBC1D28 Missense_Mutation p.A110E 0.44 deleterious(0) probably_damaging(0.989) TCGA-LA-A446-01 17 32483495 32483495 G C ASIC2 Missense_Mutation p.I19M 0.19 tolerated(0.07) benign(0.028) TCGA-LA-A446-01 17 36339704 36339704 C A TBC1D3 Missense_Mutation p.C318F 0.14 tolerated(0.15) benign(0.068) TCGA-LA-A446-01 17 42991163 42991163 A T GFAP Missense_Mutation p.L184Q 0.45 deleterious(0) possibly_damaging(0.806) TCGA-LA-A446-01 17 45773429 45773429 G T TBKBP1 5'UTR 0.38 TCGA-LA-A446-01 17 64873352 64873352 G T CACNG5 5'UTR 0.61 TCGA-LA-A446-01 17 7094058 7094058 T C DLG4 Missense_Mutation p.Y758C 0.46 deleterious(0.01) probably_damaging(0.968) TCGA-LA-A446-01 17 72341009 72341009 G T KIF19 Missense_Mutation p.R231L 0.53 deleterious(0) possibly_damaging(0.548) TCGA-LA-A446-01 17 7579312 7579312 C A TP53 Silent p.T125T 0.35 TCGA-LA-A446-01 17 8784073 8784073 C T PIK3R5 Silent p.E842E 0.16 TCGA-LA-A446-01 18 11753880 11753880 A C GNAL Missense_Mutation p.E187A 0.12 tolerated(0.15) benign(0.004) TCGA-LA-A446-01 18 2700812 2700812 A G SMCHD1 Missense_Mutation p.T515A 0.36 tolerated(0.06) probably_damaging(0.993) TCGA-LA-A446-01 18 347244 347244 T C COLEC12 Silent p.T126T 0.24 TCGA-LA-A446-01 18 43833785 43833785 A T C18orf25 Missense_Mutation p.R341W 0.10 probably_damaging(0.995) TCGA-LA-A446-01 18 55027418 55027418 G A ST8SIA3 Silent p.Q351Q 0.13 TCGA-LA-A446-01 18 61471642 61471642 G T SERPINB7 Missense_Mutation p.D306Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-LA-A446-01 18 64197162 64197162 C G CDH19 Missense_Mutation p.V460L 0.15 deleterious(0.05) benign(0.09) TCGA-LA-A446-01 18 67741232 67741232 T G RTTN Splice_Site p.X1522_splice 0.24 TCGA-LA-A446-01 18 74091201 74091201 G T ZNF516 Missense_Mutation p.P957T 0.33 tolerated(0.22) benign(0.039) TCGA-LA-A446-01 18 77170753 77170753 C - NFATC1 Frame_Shift_Del p.S148Afs*11 0.22 TCGA-LA-A446-01 19 11233880 11233880 C A LDLR Missense_Mutation p.T724K 0.35 tolerated(0.18) benign(0.104) TCGA-LA-A446-01 19 12821531 12821531 G A TNPO2 Silent p.L392L 0.35 TCGA-LA-A446-01 19 15905086 15905086 C A OR10H5 Silent p.A76A 0.36 TCGA-LA-A446-01 19 16611958 16611958 G T C19orf44 Missense_Mutation p.D119Y 0.14 deleterious(0) probably_damaging(0.992) TCGA-LA-A446-01 19 18632936 18632936 C A ELL 5'UTR 0.25 TCGA-LA-A446-01 19 19030182 19030182 C G COPE 5'UTR 0.07 TCGA-LA-A446-01 19 21239560 21239560 G T ZNF430 Missense_Mutation p.C149F 0.34 deleterious(0.03) possibly_damaging(0.448) TCGA-LA-A446-01 19 22574568 22574568 T C ZNF98 Missense_Mutation p.Y490C 0.08 deleterious(0.02) probably_damaging(0.993) TCGA-LA-A446-01 19 22847697 22847697 C A ZNF492 Missense_Mutation p.T409N 0.34 tolerated(0.12) benign(0.001) TCGA-LA-A446-01 19 30936216 30936216 G T ZNF536 Missense_Mutation p.V583F 0.57 tolerated(0.09) possibly_damaging(0.489) TCGA-LA-A446-01 19 35791078 35791078 C T MAG Silent p.S247S 0.33 TCGA-LA-A446-01 19 38655513 38655514 - GGG SIPA1L3 In_Frame_Ins p.G1394dup 0.38 TCGA-LA-A446-01 19 3964951 3964951 C T DAPK3 Missense_Mutation p.G34D 0.12 deleterious(0.04) benign(0.043) TCGA-LA-A446-01 19 47423689 47423689 A C ARHGAP35 Missense_Mutation p.Q586P 0.20 tolerated(0.28) benign(0.187) TCGA-LA-A446-01 19 52034092 52034092 C G SIGLEC6 Missense_Mutation p.M183I 0.19 tolerated(0.3) benign(0.105) TCGA-LA-A446-01 19 52619253 52619253 C T ZNF616 Silent p.K388K 0.14 TCGA-LA-A446-01 19 53270675 53270675 C T ZNF600 Missense_Mutation p.E112K 0.17 tolerated(0.06) benign(0.395) TCGA-LA-A446-01 19 53578307 53578307 C T ZNF160 Intron 0.16 TCGA-LA-A446-01 19 54561817 54561817 G T VSTM1 Missense_Mutation p.A33D 0.08 deleterious(0) probably_damaging(0.996) TCGA-LA-A446-01 19 54803749 54803749 G A LILRA3 Silent p.P25P 0.19 TCGA-LA-A446-01 19 56952941 56952941 C T ZNF667 Missense_Mutation p.E475K 0.46 tolerated(0.09) benign(0.352) TCGA-LA-A446-01 19 57036944 57036944 C T ZNF471 Missense_Mutation p.A503V 0.21 tolerated(0.36) probably_damaging(0.958) TCGA-LA-A446-01 19 57175115 57175115 G T ZNF835 Missense_Mutation p.S484R 0.13 tolerated(0.3) benign(0.14) TCGA-LA-A446-01 19 58153102 58153102 G T ZNF211 Silent p.R481R 0.44 TCGA-LA-A446-01 19 58946367 58946367 C T ZNF132 Silent p.G148G 0.09 TCGA-LA-A446-01 19 58946462 58946462 C T ZNF132 Missense_Mutation p.D117N 0.12 deleterious(0.02) benign(0.007) TCGA-LA-A446-01 19 6190518 6190518 C A ACSBG2 Intron 0.61 TCGA-LA-A446-01 19 7706984 7706984 G T STXBP2 Missense_Mutation p.D215Y 0.46 deleterious(0.03) possibly_damaging(0.765) TCGA-LA-A446-01 19 8503493 8503493 T A MARCH2 3'UTR 0.38 TCGA-LA-A446-01 19 9064354 9064354 A T MUC16 Missense_Mutation p.S7698T 0.12 unknown(0) TCGA-LA-A446-01 19 9076207 9076207 C T MUC16 Missense_Mutation p.A3747T 0.45 unknown(0) TCGA-LA-A446-01 1 101705016 101705016 G T S1PR1 Missense_Mutation p.R159L 0.15 deleterious(0) probably_damaging(1) TCGA-LA-A446-01 1 104160166 104160166 G A AMY2A Missense_Mutation p.R35Q 0.32 deleterious(0.01) possibly_damaging(0.713) TCGA-LA-A446-01 1 115258748 115258748 C A NRAS Missense_Mutation p.G12C 0.20 deleterious(0.04) probably_damaging(0.955) TCGA-LA-A446-01 1 12837202 12837202 G T PRAMEF12 Silent p.L304L 0.34 TCGA-LA-A446-01 1 145688131 145688131 G C RNF115 Missense_Mutation p.D276H 0.19 deleterious(0) probably_damaging(0.982) TCGA-LA-A446-01 1 149399195 149399195 G A HIST2H3PS2 3'Flank 0.11 TCGA-LA-A446-01 1 150193048 150193048 C A ANP32E Missense_Mutation p.R251L 0.18 deleterious(0.01) unknown(0) TCGA-LA-A446-01 1 155450282 155450282 T A ASH1L Missense_Mutation p.L793F 0.52 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-LA-A446-01 1 157512802 157512802 C A FCRL5 Nonsense_Mutation p.E324* 0.50 TCGA-LA-A446-01 1 158984686 158984686 A T IFI16 Silent p.I72I 0.21 TCGA-LA-A446-01 1 162344285 162344285 G T C1orf111 Silent p.A113A 0.46 TCGA-LA-A446-01 1 180853177 180853177 A T XPR1 Missense_Mutation p.D689V 0.31 deleterious_low_confidence(0) possibly_damaging(0.501) TCGA-LA-A446-01 1 196762526 196762526 A C CFHR3 Silent p.A292A 0.39 TCGA-LA-A446-01 1 198672459 198672459 C G PTPRC Missense_Mutation p.L206V 0.09 tolerated(0.31) benign(0.002) TCGA-LA-A446-01 1 201104855 201104855 C A TMEM9 Missense_Mutation p.R163L 0.30 deleterious(0) probably_damaging(0.999) TCGA-LA-A446-01 1 201113056 201113056 G A TMEM9 Silent p.S97S 0.14 TCGA-LA-A446-01 1 203677223 203677223 C T ATP2B4 Silent p.S516S 0.34 TCGA-LA-A446-01 1 204082050 204082050 A C SOX13 Missense_Mutation p.M3L 0.44 deleterious_low_confidence(0.04) benign(0.008) TCGA-LA-A446-01 1 205628590 205628590 G T SLC45A3 Silent p.T478T 0.50 TCGA-LA-A446-01 1 205884372 205884372 C T SLC26A9 Intron 0.38 TCGA-LA-A446-01 1 207639937 207639937 C T CR2 Missense_Mutation p.A42V 0.18 tolerated(0.28) benign(0.002) TCGA-LA-A446-01 1 208211798 208211798 G A PLXNA2 Missense_Mutation p.A1561V 0.44 deleterious(0.02) probably_damaging(0.981) TCGA-LA-A446-01 1 211654647 211654647 C A RD3 Missense_Mutation p.M37I 0.25 tolerated(0.71) benign(0.002) TCGA-LA-A446-01 1 212515569 212515569 G A PPP2R5A Missense_Mutation p.D174N 0.15 deleterious(0.02) probably_damaging(0.911) TCGA-LA-A446-01 1 214169879 214169879 A G PROX1 Translation_Start_Site p.M1? 0.13 deleterious_low_confidence(0.01) probably_damaging(0.914) TCGA-LA-A446-01 1 225147871 225147871 T C DNAH14 Silent p.S78S 0.55 TCGA-LA-A446-01 1 228447295 228447295 A G OBSCN Missense_Mutation p.Q1652R 0.22 benign(0.055) TCGA-LA-A446-01 1 22927954 22927954 G A EPHA8 Missense_Mutation p.R964H 0.39 tolerated(0.25) benign(0.019) TCGA-LA-A446-01 1 229593910 229593910 T C NUP133 Missense_Mutation p.E993G 0.43 tolerated(0.18) probably_damaging(0.982) TCGA-LA-A446-01 1 233514859 233514859 G A MLK4 Missense_Mutation p.E703K 0.26 deleterious(0.03) benign(0.002) TCGA-LA-A446-01 1 240976978 240976978 G - RGS7 Frame_Shift_Del p.P299Hfs*29 0.12 TCGA-LA-A446-01 1 247654487 247654487 C T OR2W5 RNA 0.09 TCGA-LA-A446-01 1 247654616 247654616 C T OR2W5 RNA 0.10 TCGA-LA-A446-01 1 247654629 247654629 C G OR2W5 RNA 0.11 TCGA-LA-A446-01 1 247769527 247769527 A T OR2G3 Missense_Mutation p.I214F 0.38 deleterious(0) probably_damaging(0.99) TCGA-LA-A446-01 1 247920938 247920938 G T OR1C1 Silent p.A257A 0.47 TCGA-LA-A446-01 1 247978482 247978482 C G OR14A16 Missense_Mutation p.A184P 0.09 deleterious(0.01) possibly_damaging(0.88) TCGA-LA-A446-01 1 247978500 247978500 C T OR14A16 Missense_Mutation p.D178N 0.09 deleterious(0.02) possibly_damaging(0.764) TCGA-LA-A446-01 1 248551455 248551455 C T OR2T6 Silent p.P182P 0.14 TCGA-LA-A446-01 1 26140619 26140619 A T SEPN1 Nonsense_Mutation p.K518* 0.26 TCGA-LA-A446-01 1 31437588 31437588 T C PUM1 Silent p.G752G 0.47 TCGA-LA-A446-01 1 3328789 3328789 G T PRDM16 Silent p.P676P 0.46 TCGA-LA-A446-01 1 37961492 37961492 T G MEAF6 Silent p.P197P 0.40 TCGA-LA-A446-01 1 39908438 39908438 A G MACF1 Missense_Mutation p.K4327R 0.39 benign(0.043) TCGA-LA-A446-01 1 48713140 48713140 C A SLC5A9 Silent p.L682L 0.36 TCGA-LA-A446-01 1 948899 948899 C T ISG15 5'UTR 0.25 TCGA-LA-A446-01 20 2444426 2444426 C A SNRPB Silent p.G129G 0.24 TCGA-LA-A446-01 20 24993448 24993448 G A ACSS1 Silent p.I569I 0.17 TCGA-LA-A446-01 20 3215515 3215515 G T SLC4A11 Missense_Mutation p.D81E 0.27 tolerated(0.18) benign(0.041) TCGA-LA-A446-01 20 34025347 34025347 G A GDF5 Missense_Mutation p.T121I 0.26 tolerated(0.14) probably_damaging(0.969) TCGA-LA-A446-01 20 36869055 36869055 T A KIAA1755 Missense_Mutation p.H493L 0.28 deleterious(0) benign(0.006) TCGA-LA-A446-01 20 368767 368767 G T TRIB3 Missense_Mutation p.G38V 0.29 tolerated(0.14) possibly_damaging(0.534) TCGA-LA-A446-01 20 54974245 54974245 G C CSTF1 Missense_Mutation p.D290H 0.07 deleterious(0) probably_damaging(0.999) TCGA-LA-A446-01 21 17443649 17443649 G C LINC00478 RNA 0.40 TCGA-LA-A446-01 21 37597893 37597893 C G DOPEY2 Missense_Mutation p.N467K 0.35 tolerated(1) benign(0) TCGA-LA-A446-01 21 40720229 40720229 C T HMGN1 Missense_Mutation p.A39T 0.45 tolerated(0.18) benign(0.042) TCGA-LA-A446-01 21 47783764 47783764 G C PCNT Missense_Mutation p.E842Q 0.38 possibly_damaging(0.727) TCGA-LA-A446-01 22 17288702 17288702 A G XKR3 Missense_Mutation p.F88L 0.26 tolerated(0.09) possibly_damaging(0.787) TCGA-LA-A446-01 22 27024395 27024395 G A CRYBA4 Splice_Site p.X148_splice 0.29 TCGA-LA-A446-01 22 39907333 39907333 G T MIEF1 Missense_Mutation p.D12Y 0.20 deleterious(0.02) probably_damaging(0.998) TCGA-LA-A446-01 2 103039654 103039654 C A IL18RAP 5'UTR 0.37 TCGA-LA-A446-01 2 109271560 109271560 C A LIMS1 Nonsense_Mutation p.C10* 0.20 TCGA-LA-A446-01 2 120221705 120221705 G A SCTR Silent p.A210A 0.43 TCGA-LA-A446-01 2 128466399 128466399 T A WDR33 Silent p.P1211P 0.20 TCGA-LA-A446-01 2 130955934 130955934 G T TUBA3E 5'UTR 0.21 TCGA-LA-A446-01 2 130955935 130955935 G A TUBA3E 5'UTR 0.20 TCGA-LA-A446-01 2 131520008 131520008 G A AMER3 Silent p.P121P 0.13 TCGA-LA-A446-01 2 166536375 166536375 G A CSRNP3 3'UTR 0.55 TCGA-LA-A446-01 2 168103331 168103331 C T XIRP2 Missense_Mutation p.P1810L 0.33 probably_damaging(1) TCGA-LA-A446-01 2 172945154 172945154 G T METAP1D 3'UTR 0.23 TCGA-LA-A446-01 2 176042945 176042945 G A ATP5G3 3'UTR 0.29 TCGA-LA-A446-01 2 178098944 178098944 C T NFE2L2 Missense_Mutation p.R34Q 0.48 deleterious(0) probably_damaging(0.999) TCGA-LA-A446-01 2 179408989 179408989 G T TTN Missense_Mutation p.N31989K 0.24 TCGA-LA-A446-01 2 179669343 179669343 C T TTN Silent p.T9T 0.23 TCGA-LA-A446-01 2 198950617 198950617 C A PLCL1 Silent p.A792A 0.32 TCGA-LA-A446-01 2 204735561 204735561 C T CTLA4 Missense_Mutation p.A121V 0.37 deleterious(0.01) benign(0.19) TCGA-LA-A446-01 2 212295807 212295807 C T ERBB4 Missense_Mutation p.E836K 0.17 deleterious(0.04) benign(0.27) TCGA-LA-A446-01 2 228884261 228884261 C G SPHKAP Missense_Mutation p.D437H 0.40 deleterious(0.02) benign(0.062) TCGA-LA-A446-01 2 231774983 231774983 A T GPR55 Missense_Mutation p.L232Q 0.40 deleterious(0) probably_damaging(0.999) TCGA-LA-A446-01 2 231774984 231774984 G T GPR55 Missense_Mutation p.L232M 0.40 deleterious(0) probably_damaging(0.999) TCGA-LA-A446-01 2 238249296 238249296 C A COL6A3 Missense_Mutation p.A2755S 0.38 unknown(0) TCGA-LA-A446-01 2 264937 264937 G T ACP1 5'UTR 0.19 TCGA-LA-A446-01 2 27360873 27360873 G T C2orf53 Missense_Mutation p.R109S 0.18 tolerated(0.46) benign(0.072) TCGA-LA-A446-01 2 28828748 28828748 C T PLB1 Missense_Mutation p.A997V 0.30 deleterious(0) probably_damaging(0.981) TCGA-LA-A446-01 2 29368186 29368186 A T CLIP4 Missense_Mutation p.N325I 0.20 deleterious(0) probably_damaging(0.982) TCGA-LA-A446-01 2 32822882 32822882 C A BIRC6 Nonsense_Mutation p.Y4559* 0.23 TCGA-LA-A446-01 2 3730623 3730623 C G ALLC Missense_Mutation p.S157C 0.16 tolerated(0.09) benign(0.078) TCGA-LA-A446-01 2 49381522 49381522 A T FSHR Missense_Mutation p.L12Q 0.59 tolerated(0.06) benign(0.021) TCGA-LA-A446-01 2 50699449 50699449 C T NRXN1 Silent p.E1117E 0.42 TCGA-LA-A446-01 2 54871464 54871464 G T SPTBN1 Missense_Mutation p.G1337V 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-LA-A446-01 2 77745408 77745408 C A LRRTM4 Intron 0.27 TCGA-LA-A446-01 2 79253243 79253243 C T REG3G Silent p.P8P 0.28 TCGA-LA-A446-01 2 79386645 79386645 C A REG3A 5'UTR 0.56 TCGA-LA-A446-01 2 80529598 80529598 G T LRRTM1 Silent p.S449S 0.21 TCGA-LA-A446-01 2 80529599 80529599 G T LRRTM1 Missense_Mutation p.S449Y 0.21 deleterious(0) possibly_damaging(0.691) TCGA-LA-A446-01 2 88472750 88472750 G T THNSL2 Silent p.G27G 0.17 TCGA-LA-A446-01 2 89544504 89544504 G T IGKV2-30 Silent p.S40S 0.34 TCGA-LA-A446-01 2 90211966 90211966 G T IGKV3D-11 Nonsense_Mutation p.G20* 0.27 TCGA-LA-A446-01 2 9583652 9583652 G T CPSF3 Missense_Mutation p.M368I 0.28 tolerated(0.3) benign(0.001) TCGA-LA-A446-01 3 102157324 102157324 G T ZPLD1 Missense_Mutation p.G14V 0.09 tolerated_low_confidence(0.16) possibly_damaging(0.522) TCGA-LA-A446-01 3 122647852 122647852 C - SEMA5B Frame_Shift_Del p.K231Rfs*13 0.40 TCGA-LA-A446-01 3 122842963 122842963 G T PDIA5 Missense_Mutation p.E220D 0.63 tolerated(0.08) benign(0.392) TCGA-LA-A446-01 3 123166561 123166561 C T ADCY5 Missense_Mutation p.V278I 0.35 tolerated(0.83) benign(0.001) TCGA-LA-A446-01 3 138665175 138665175 C G FOXL2 Silent p.L130L 0.12 TCGA-LA-A446-01 3 145841960 145841960 T A PLOD2 Missense_Mutation p.M56L 0.10 tolerated(0.91) benign(0.005) TCGA-LA-A446-01 3 148458890 148458890 G A AGTR1 Missense_Mutation p.R23K 0.21 tolerated(0.64) benign(0.304) TCGA-LA-A446-01 3 151463304 151463304 C A AADACL2 Missense_Mutation p.L147M 0.50 deleterious(0) probably_damaging(0.997) TCGA-LA-A446-01 3 152880989 152880989 G T RAP2B Missense_Mutation p.Q169H 0.24 tolerated(0.11) benign(0.111) TCGA-LA-A446-01 3 174974280 174974280 C T NAALADL2 Silent p.I300I 0.45 TCGA-LA-A446-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.17 deleterious(0.04) probably_damaging(0.96) TCGA-LA-A446-01 3 183823748 183823748 C A HTR3E Missense_Mutation p.P332T 0.29 deleterious(0) probably_damaging(0.989) TCGA-LA-A446-01 3 193081098 193081098 T G ATP13A5 Missense_Mutation p.K104T 0.26 tolerated(0.36) benign(0.186) TCGA-LA-A446-01 3 197762727 197762727 G C LMLN Silent p.L597L 0.09 TCGA-LA-A446-01 3 38833573 38833573 G T SCN10A Silent p.I119I 0.41 TCGA-LA-A446-01 3 69988247 69988247 A T MITF Splice_Site p.X195_splice 0.28 TCGA-LA-A446-01 3 93629495 93629495 T C PROS1 Missense_Mutation p.N105S 0.18 tolerated(0.24) benign(0.103) TCGA-LA-A446-01 4 103498184 103498184 C T NFKB1 Missense_Mutation p.R187W 0.30 deleterious(0.01) possibly_damaging(0.768) TCGA-LA-A446-01 4 104067045 104067045 C G CENPE Missense_Mutation p.E1452Q 0.34 benign(0.025) TCGA-LA-A446-01 4 114199687 114199687 G T ANK2 Missense_Mutation p.K618N 0.20 possibly_damaging(0.477) TCGA-LA-A446-01 4 115997355 115997355 G T NDST4 Missense_Mutation p.H280N 0.16 tolerated(0.1) probably_damaging(0.954) TCGA-LA-A446-01 4 128665848 128665848 G T SLC25A31 Missense_Mutation p.G85V 0.37 deleterious(0.02) probably_damaging(0.972) TCGA-LA-A446-01 4 154216879 154216879 G T TRIM2 Missense_Mutation p.G401W 0.37 deleterious(0) probably_damaging(0.997) TCGA-LA-A446-01 4 155490910 155490910 C A FGB Missense_Mutation p.N401K 0.38 deleterious(0.03) probably_damaging(0.927) TCGA-LA-A446-01 4 186299186 186299186 G T LRP2BP Intron 0.61 TCGA-LA-A446-01 4 25674846 25674846 G A SLC34A2 Missense_Mutation p.A396T 0.21 deleterious(0.01) possibly_damaging(0.746) TCGA-LA-A446-01 4 42457360 42457360 G T ATP8A1 Missense_Mutation p.P924H 0.18 deleterious(0) probably_damaging(0.998) TCGA-LA-A446-01 4 47560125 47560125 G C ATP10D Missense_Mutation p.A757P 0.26 tolerated(1) benign(0.029) TCGA-LA-A446-01 4 514985 514985 C T PIGG Silent p.L419L 0.18 TCGA-LA-A446-01 4 517334 517334 C T PIGG Silent p.A567A 0.26 TCGA-LA-A446-01 4 52860990 52860990 T C LRRC66 Missense_Mutation p.E733G 0.30 deleterious(0.01) benign(0.012) TCGA-LA-A446-01 4 54319201 54319201 G T FIP1L1 Missense_Mutation p.R467I 0.13 deleterious(0) probably_damaging(0.988) TCGA-LA-A446-01 4 59353 59353 G T ZNF595 Nonsense_Mutation p.E12* 0.04 TCGA-LA-A446-01 4 66201712 66201712 G T EPHA5 Missense_Mutation p.N930K 0.20 deleterious(0.01) benign(0.05) TCGA-LA-A446-01 4 71509879 71509879 C A ENAM Missense_Mutation p.D912E 0.17 tolerated(1) benign(0.001) TCGA-LA-A446-01 4 8582824 8582824 C G GPR78 Missense_Mutation p.R39G 0.28 deleterious(0.01) possibly_damaging(0.879) TCGA-LA-A446-01 4 984977 984977 C T SLC26A1 Missense_Mutation p.G172E 0.11 tolerated(0.11) possibly_damaging(0.662) TCGA-LA-A446-01 5 109106088 109106088 A T MAN2A1 Missense_Mutation p.M348L 0.24 tolerated(0.11) possibly_damaging(0.74) TCGA-LA-A446-01 5 109117269 109117269 G A MAN2A1 Missense_Mutation p.R516Q 0.43 deleterious(0.04) probably_damaging(0.937) TCGA-LA-A446-01 5 121187973 121187973 C T FTMT Silent p.D105D 0.14 TCGA-LA-A446-01 5 140752101 140752101 C T PCDHGB3 Missense_Mutation p.R714C 0.43 tolerated(0.11) benign(0.139) TCGA-LA-A446-01 5 14270996 14270996 G A TRIO Missense_Mutation p.A74T 0.13 benign(0.213) TCGA-LA-A446-01 5 161113291 161113291 G A GABRA6 Missense_Mutation p.V32I 0.16 tolerated(1) benign(0.003) TCGA-LA-A446-01 5 169505978 169505978 G C DOCK2 Splice_Site p.X1665_splice 0.43 TCGA-LA-A446-01 5 180660735 180660735 G A TRIM41 Missense_Mutation p.M421I 0.29 deleterious(0.03) benign(0.019) TCGA-LA-A446-01 5 24491775 24491775 G C CDH10 Missense_Mutation p.Q596E 0.23 tolerated(0.74) possibly_damaging(0.585) TCGA-LA-A446-01 5 35644574 35644574 C T SPEF2 Missense_Mutation p.L178F 0.16 tolerated(0.74) benign(0.007) TCGA-LA-A446-01 5 43503827 43503827 G C C5orf34 Missense_Mutation p.S323C 0.09 tolerated(0.07) possibly_damaging(0.849) TCGA-LA-A446-01 5 43653258 43653258 C T NNT Missense_Mutation p.P668S 0.13 tolerated(0.4) probably_damaging(0.92) TCGA-LA-A446-01 5 45262228 45262228 G T HCN1 Missense_Mutation p.P823H 0.53 tolerated_low_confidence(0.35) benign(0) TCGA-LA-A446-01 5 50689367 50689367 G - ISL1 Frame_Shift_Del p.G325Afs*4 0.32 TCGA-LA-A446-01 5 60188380 60188380 C A ERCC8 Intron 0.25 TCGA-LA-A446-01 5 633948 633948 G A CEP72 Missense_Mutation p.D193N 0.15 deleterious(0) probably_damaging(0.952) TCGA-LA-A446-01 5 633984 633984 G A CEP72 Missense_Mutation p.E205K 0.15 deleterious(0.01) probably_damaging(0.993) TCGA-LA-A446-01 5 637722 637726 GCAGG ACA CEP72 Frame_Shift_Del p.C332Yfs*53 0.10 TCGA-LA-A446-01 5 637749 637749 G A CEP72 Missense_Mutation p.R341K 0.06 tolerated(0.08) benign(0.06) TCGA-LA-A446-01 5 637756 637756 G A CEP72 Silent p.Q343Q 0.09 TCGA-LA-A446-01 6 110448743 110448743 C A WASF1 Missense_Mutation p.G21V 0.18 deleterious(0) unknown(0) TCGA-LA-A446-01 6 117245921 117245921 C G RFX6 Missense_Mutation p.Q549E 0.33 deleterious(0) probably_damaging(0.978) TCGA-LA-A446-01 6 117246696 117246696 G T RFX6 Missense_Mutation p.D587Y 0.29 deleterious(0.01) possibly_damaging(0.822) TCGA-LA-A446-01 6 132695880 132695880 C A MOXD1 Missense_Mutation p.D101Y 0.36 deleterious(0.03) probably_damaging(0.989) TCGA-LA-A446-01 6 132892040 132892040 G T TAAR6 Missense_Mutation p.V194L 0.33 tolerated(0.4) benign(0.03) TCGA-LA-A446-01 6 134349938 134349938 C A SLC2A12 Missense_Mutation p.G342V 0.28 deleterious(0) probably_damaging(1) TCGA-LA-A446-01 6 165863738 165863738 A G PDE10A Missense_Mutation p.I113T 0.06 deleterious(0.02) probably_damaging(0.993) TCGA-LA-A446-01 6 24175058 24175058 T C DCDC2 Missense_Mutation p.D444G 0.11 tolerated_low_confidence(0.18) benign(0.015) TCGA-LA-A446-01 6 24564535 24564535 G T KIAA0319 Missense_Mutation p.L776M 0.25 deleterious(0) probably_damaging(0.988) TCGA-LA-A446-01 6 26056216 26056216 C A HIST1H1C Silent p.P147P 0.31 TCGA-LA-A446-01 6 28270103 28270103 G C PGBD1 3'UTR 0.09 TCGA-LA-A446-01 6 30126188 30126188 C T TRIM10 Silent p.R248R 0.30 TCGA-LA-A446-01 6 31132578 31132578 G A POU5F1 Nonsense_Mutation p.R295* 0.27 TCGA-LA-A446-01 6 31948270 31948270 G A STK19 Silent p.G286G 0.19 TCGA-LA-A446-01 6 32948420 32948420 C T BRD2 Silent p.S812S 0.30 TCGA-LA-A446-01 6 38775447 38775447 C A DNAH8 Missense_Mutation p.T854K 0.28 benign(0.342) TCGA-LA-A446-01 6 38862482 38862482 G T DNAH8 Missense_Mutation p.K2646N 0.33 probably_damaging(0.998) TCGA-LA-A446-01 6 38881698 38881698 G C DNAH8 Missense_Mutation p.E3094D 0.10 benign(0.253) TCGA-LA-A446-01 6 44414437 44414437 T A CDC5L Missense_Mutation p.S800T 0.32 tolerated(0.23) benign(0.002) TCGA-LA-A446-01 6 46554895 46554895 C A CYP39A1 Missense_Mutation p.W390L 0.27 deleterious(0) probably_damaging(0.997) TCGA-LA-A446-01 6 49668474 49668474 T A CRISP2 Missense_Mutation p.L30F 0.38 tolerated(0.17) possibly_damaging(0.66) TCGA-LA-A446-01 6 49753607 49753607 G T PGK2 3'UTR 0.27 TCGA-LA-A446-01 6 49754574 49754574 G C PGK2 Silent p.A109A 0.26 TCGA-LA-A446-01 6 52962603 52962603 C T FBXO9 Missense_Mutation p.T440I 0.25 deleterious(0) probably_damaging(0.993) TCGA-LA-A446-01 6 55198639 55198639 G A GFRAL Silent p.Q71Q 0.26 TCGA-LA-A446-01 6 70981374 70981374 C T COL9A1 Missense_Mutation p.G376D 0.12 probably_damaging(1) TCGA-LA-A446-01 6 74191775 74191775 G A MTO1 Missense_Mutation p.G465R 0.09 deleterious(0) probably_damaging(0.984) TCGA-LA-A446-01 6 84233165 84233165 A G PRSS35 Missense_Mutation p.E2G 0.29 tolerated_low_confidence(0.16) benign(0.005) TCGA-LA-A446-01 6 88768464 88768464 G T SPACA1 Missense_Mutation p.S133I 0.21 deleterious(0.01) possibly_damaging(0.509) TCGA-LA-A446-01 6 97711262 97711262 C A MMS22L Missense_Mutation p.W297C 0.23 deleterious(0) probably_damaging(0.998) TCGA-LA-A446-01 6 97711263 97711263 C G MMS22L Missense_Mutation p.W297S 0.23 deleterious(0) probably_damaging(0.997) TCGA-LA-A446-01 7 100481744 100481744 G A SRRT Missense_Mutation p.R214Q 0.32 tolerated(0.55) benign(0.035) TCGA-LA-A446-01 7 100693886 100693886 C A MUC17 Missense_Mutation p.Q4282K 0.38 unknown(0) TCGA-LA-A446-01 7 107800920 107800920 C T NRCAM Missense_Mutation p.V1162M 0.19 deleterious(0) probably_damaging(0.993) TCGA-LA-A446-01 7 113558309 113558309 G A PPP1R3A Missense_Mutation p.P248L 0.36 tolerated(0.05) benign(0.439) TCGA-LA-A446-01 7 123332428 123332428 C G WASL Missense_Mutation p.Q440H 0.39 deleterious(0) probably_damaging(1) TCGA-LA-A446-01 7 123516886 123516886 G T HYAL4 Missense_Mutation p.V375L 0.20 tolerated(0.91) benign(0.002) TCGA-LA-A446-01 7 126746587 126746587 G A GRM8 Silent p.S230S 0.28 TCGA-LA-A446-01 7 131887416 131887416 G - PLXNA4 Frame_Shift_Del p.R859Afs*5 0.26 TCGA-LA-A446-01 7 142032013 142032013 A G TRBV7-1 5'UTR 0.21 TCGA-LA-A446-01 7 142428940 142428941 - A TRBV28 Frame_Shift_Ins p.S101Kfs*? 0.31 TCGA-LA-A446-01 7 142498773 142498773 C T TRBC2 Missense_Mutation p.S17L 0.28 deleterious(0) probably_damaging(0.999) TCGA-LA-A446-01 7 149481968 149481968 C A SSPO Intron 0.14 TCGA-LA-A446-01 7 149524889 149524889 G T SSPO RNA 0.35 TCGA-LA-A446-01 7 150674973 150674973 G T KCNH2 Missense_Mutation p.P10Q 0.49 deleterious(0.04) probably_damaging(0.987) TCGA-LA-A446-01 7 151668094 151668094 G T GALNTL5 Silent p.V104V 0.09 TCGA-LA-A446-01 7 15427081 15427081 C T AGMO Missense_Mutation p.G303R 0.30 deleterious(0) probably_damaging(0.997) TCGA-LA-A446-01 7 154684243 154684243 G A DPP6 3'UTR 0.17 TCGA-LA-A446-01 7 21760457 21760457 A C DNAH11 Missense_Mutation p.T2424P 0.12 benign(0.005) TCGA-LA-A446-01 7 30118257 30118257 G T PLEKHA8 Missense_Mutation p.V472L 0.23 tolerated(0.32) benign(0.003) TCGA-LA-A446-01 7 33313447 33313447 G T BBS9 Nonsense_Mutation p.G299* 0.32 TCGA-LA-A446-01 7 43477754 43477754 T C HECW1 Intron 0.37 TCGA-LA-A446-01 7 47876594 47876595 GC - PKD1L1 Frame_Shift_Del p.R1956Pfs*77 0.35 TCGA-LA-A446-01 7 47937627 47937627 C A PKD1L1 Silent p.P743P 0.27 TCGA-LA-A446-01 7 50514903 50514903 C A FIGNL1 Missense_Mutation p.G28V 0.34 tolerated(0.07) benign(0.01) TCGA-LA-A446-01 7 57188335 57188335 G T ZNF479 Missense_Mutation p.H263N 0.30 deleterious(0.01) probably_damaging(0.994) TCGA-LA-A446-01 7 57188848 57188848 G T ZNF479 Missense_Mutation p.H92N 0.31 deleterious(0.01) benign(0.083) TCGA-LA-A446-01 7 70227995 70227995 G T AUTS2 Silent p.V294V 0.37 TCGA-LA-A446-01 7 87195558 87195558 C A ABCB1 Splice_Site p.X177_splice 0.15 TCGA-LA-A446-01 7 97873987 97873987 C A TECPR1 Missense_Mutation p.D143Y 0.30 deleterious(0) probably_damaging(1) TCGA-LA-A446-01 8 10285707 10285707 G T MSRA Missense_Mutation p.G198V 0.37 deleterious(0.05) benign(0.317) TCGA-LA-A446-01 8 105360975 105360975 G C DCSTAMP Missense_Mutation p.W65C 0.11 deleterious(0) probably_damaging(0.959) TCGA-LA-A446-01 8 106813421 106813421 G A ZFPM2 Missense_Mutation p.G371S 0.29 tolerated(1) benign(0.121) TCGA-LA-A446-01 8 109094904 109094904 C A RSPO2 5'UTR 0.32 TCGA-LA-A446-01 8 113267501 113267501 A G CSMD3 Missense_Mutation p.S3340P 0.15 tolerated(0.08) probably_damaging(0.909) TCGA-LA-A446-01 8 12589349 12589349 C A LONRF1 Missense_Mutation p.R528S 0.17 deleterious(0.05) benign(0.041) TCGA-LA-A446-01 8 134474176 134474176 C A ST3GAL1 Missense_Mutation p.G264V 0.11 probably_damaging(0.996) TCGA-LA-A446-01 8 144991006 144991006 T C PLEC Missense_Mutation p.E4465G 0.11 probably_damaging(0.909) TCGA-LA-A446-01 8 145135277 145135277 G T EXOSC4 Missense_Mutation p.A171S 0.48 deleterious(0.02) benign(0.36) TCGA-LA-A446-01 8 19811688 19811688 C T LPL Missense_Mutation p.P200L 0.35 deleterious(0) probably_damaging(0.987) TCGA-LA-A446-01 8 22464168 22464168 G C CCAR2 Missense_Mutation p.D67H 0.13 deleterious(0) probably_damaging(1) TCGA-LA-A446-01 8 22464795 22464795 G T CCAR2 Missense_Mutation p.L148F 0.24 tolerated(0.17) probably_damaging(0.999) TCGA-LA-A446-01 8 24773214 24773214 G T NEFM Missense_Mutation p.A393S 0.32 deleterious(0) unknown(0) TCGA-LA-A446-01 8 24775260 24775260 C A NEFM Missense_Mutation p.P631H 0.41 deleterious(0.01) benign(0.003) TCGA-LA-A446-01 8 57354112 57354112 C A PENK Missense_Mutation p.G175C 0.13 tolerated(0.12) benign(0.014) TCGA-LA-A446-01 8 67509665 67509665 T C MYBL1 Missense_Mutation p.K138E 0.14 deleterious(0) probably_damaging(0.998) TCGA-LA-A446-01 8 70964224 70964224 G A PRDM14 3'UTR 0.20 TCGA-LA-A446-01 9 100070324 100070324 G A CCDC180 Silent p.R37R 0.06 TCGA-LA-A446-01 9 112195441 112195441 C A PTPN3 Missense_Mutation p.D226Y 0.27 deleterious(0) probably_damaging(0.998) TCGA-LA-A446-01 9 117188664 117188664 C A DFNB31 Silent p.G331G 0.47 TCGA-LA-A446-01 9 117400864 117400864 T A C9orf91 Missense_Mutation p.M236K 0.42 deleterious(0.01) benign(0.116) TCGA-LA-A446-01 9 133779540 133779540 C T FIBCD1 Missense_Mutation p.D433N 0.42 tolerated(0.17) probably_damaging(0.968) TCGA-LA-A446-01 9 17795735 17795735 C A SH3GL2 Silent p.P351P 0.46 TCGA-LA-A446-01 9 17795736 17795736 C A SH3GL2 Missense_Mutation p.H352N 0.43 tolerated(0.26) benign(0.002) TCGA-LA-A446-01 9 27190618 27190618 T C TEK Silent p.D473D 0.21 TCGA-LA-A446-01 9 37735609 37735609 G A FRMPD1 Missense_Mutation p.V427I 0.12 tolerated(1) benign(0.001) TCGA-LA-A446-01 9 71002420 71002420 C T PGM5 Missense_Mutation p.R205W 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-LA-A446-01 9 7103867 7103867 C T KDM4C Silent p.N869N 0.35 TCGA-LA-A446-01 9 77377887 77377887 C T TRPM6 Missense_Mutation p.D1234N 0.42 tolerated(0.18) benign(0.275) TCGA-LA-A446-01 9 90321802 90321802 G - DAPK1 Frame_Shift_Del p.Y1275Tfs*31 0.45 TCGA-LA-A446-01 X 117712551 117712551 C T DOCK11 Silent p.L485L 0.57 TCGA-LA-A446-01 X 118219470 118219470 T A KIAA1210 Missense_Mutation p.E1575V 0.71 deleterious(0) probably_damaging(0.996) TCGA-LA-A446-01 X 119504588 119504588 A C ATP1B4 Missense_Mutation p.Y116S 0.68 deleterious(0) probably_damaging(1) TCGA-LA-A446-01 X 119760715 119760715 C T C1GALT1C1 Missense_Mutation p.E103K 0.73 tolerated(0.26) benign(0.108) TCGA-LA-A446-01 X 127185532 127185532 C A ACTRT1 Missense_Mutation p.K218N 0.72 tolerated(0.06) probably_damaging(0.937) TCGA-LA-A446-01 X 135428271 135428271 G T GPR112 Missense_Mutation p.E802D 0.74 deleterious(0.01) benign(0.307) TCGA-LA-A446-01 X 135593696 135593696 G A HTATSF1 Missense_Mutation p.E598K 0.70 deleterious_low_confidence(0.05) unknown(0) TCGA-LA-A446-01 X 1460658 1460658 G A IL3RA 5'UTR 0.25 TCGA-LA-A446-01 X 149642015 149642015 G T MAMLD1 Intron 0.67 TCGA-LA-A446-01 X 153130079 153130079 A T L1CAM Missense_Mutation p.C1043S 0.64 tolerated(0.17) benign(0.004) TCGA-LA-A446-01 X 18264763 18264763 C A SCML2 Missense_Mutation p.V586F 0.34 tolerated(0.21) benign(0.288) TCGA-LA-A446-01 X 30578301 30578301 A C CXorf21 Missense_Mutation p.C58G 0.05 tolerated(0.06) possibly_damaging(0.635) TCGA-LA-A446-01 X 36007588 36007588 G T CXorf22 Missense_Mutation p.G956C 0.60 tolerated(0.18) possibly_damaging(0.687) TCGA-LA-A446-01 X 37670096 37670096 A T CYBB Missense_Mutation p.S547C 0.41 tolerated(0.06) possibly_damaging(0.656) TCGA-LA-A446-01 X 47041384 47041384 G A RBM10 Silent p.E576E 0.71 TCGA-LA-A446-01 X 70613234 70613234 G T TAF1 Missense_Mutation p.M1065I 0.64 deleterious(0.04) possibly_damaging(0.604) TCGA-LA-A446-01 X 73066467 73066467 G T XIST RNA 0.69 TCGA-LA-A446-01 X 83360832 83360832 C G RPS6KA6 Missense_Mutation p.R473P 0.55 deleterious(0.01) probably_damaging(0.993) TCGA-LA-A7SW-01 10 29822318 29822318 G A SVIL Silent p.S326S 0.28 TCGA-LA-A7SW-01 10 55569135 55569135 T A PCDH15 Nonsense_Mutation p.K493* 0.13 TCGA-LA-A7SW-01 10 85936298 85936298 C A C10orf99 Missense_Mutation p.P45T 0.18 deleterious(0.03) benign(0.254) TCGA-LA-A7SW-01 11 122944250 122944250 T G CLMP Missense_Mutation p.N352H 0.20 deleterious(0.03) benign(0.213) TCGA-LA-A7SW-01 11 13378570 13378570 T C ARNTL Intron 0.21 TCGA-LA-A7SW-01 11 59942986 59942986 T G MS4A6A Silent p.S174S 0.09 TCGA-LA-A7SW-01 11 6023494 6023494 C A OR56A4 Silent p.T295T 0.18 TCGA-LA-A7SW-01 11 66102614 66102614 C G RIN1 Missense_Mutation p.G219A 0.10 tolerated(0.06) benign(0.338) TCGA-LA-A7SW-01 11 66102715 66102715 C G RIN1 Missense_Mutation p.W185C 0.16 deleterious(0) probably_damaging(0.999) TCGA-LA-A7SW-01 11 89774338 89774338 A C TRIM49C Missense_Mutation p.S327R 0.14 tolerated(0.19) benign(0.01) TCGA-LA-A7SW-01 11 9810868 9810868 C T SBF2 Missense_Mutation p.V1574I 0.23 tolerated(1) benign(0.001) TCGA-LA-A7SW-01 12 105282906 105282906 A T SLC41A2 Nonsense_Mutation p.L262* 0.21 TCGA-LA-A7SW-01 12 25398312 25398312 C T KRAS Missense_Mutation p.E3K 0.38 deleterious(0.03) benign(0.098) TCGA-LA-A7SW-01 12 26714832 26714832 G C ITPR2 Missense_Mutation p.L1562V 0.30 tolerated(0.19) benign(0.021) TCGA-LA-A7SW-01 12 40345149 40345149 C A SLC2A13 Missense_Mutation p.R315I 0.21 deleterious(0) possibly_damaging(0.629) TCGA-LA-A7SW-01 12 50571253 50571253 G A LIMA1 Missense_Mutation p.S626F 0.21 tolerated(0.74) benign(0.001) TCGA-LA-A7SW-01 12 72338405 72338405 A C TPH2 Missense_Mutation p.E160A 0.20 deleterious(0) possibly_damaging(0.78) TCGA-LA-A7SW-01 13 23907831 23907831 A T SACS Nonsense_Mutation p.L3395* 0.26 TCGA-LA-A7SW-01 13 92003576 92003576 A G MIR17HG RNA 0.09 TCGA-LA-A7SW-01 13 96505821 96505821 T C UGGT2 Silent p.P1420P 0.08 TCGA-LA-A7SW-01 13 98670919 98670919 G C IPO5 Missense_Mutation p.A951P 0.24 deleterious(0.03) possibly_damaging(0.673) TCGA-LA-A7SW-01 13 99340501 99340503 CCT - SLC15A1 Splice_Site p.X561_splice 0.22 TCGA-LA-A7SW-01 14 106111066 106111066 C T IGHG2 Missense_Mutation p.S21N 0.13 deleterious(0.03) benign(0.005) TCGA-LA-A7SW-01 14 106667772 106667772 T G IGHV3-20 Missense_Mutation p.S54R 0.04 tolerated_low_confidence(0.24) benign(0.008) TCGA-LA-A7SW-01 14 106866548 106866548 G A IGHV3-38 Missense_Mutation p.S69F 0.18 tolerated_low_confidence(0.68) benign(0.003) TCGA-LA-A7SW-01 14 64898285 64898285 C T MTHFD1 Silent p.I449I 0.42 TCGA-LA-A7SW-01 14 77275722 77275722 G C ANGEL1 Missense_Mutation p.S110C 0.11 tolerated(0.2) benign(0.01) TCGA-LA-A7SW-01 14 97026994 97026994 A C PAPOLA Silent p.T671T 0.20 TCGA-LA-A7SW-01 15 29397678 29397678 A C APBA2 Missense_Mutation p.K541Q 0.47 tolerated(0.08) possibly_damaging(0.459) TCGA-LA-A7SW-01 15 62999321 62999321 G A TLN2 Missense_Mutation p.A681T 0.44 tolerated(0.39) benign(0.243) TCGA-LA-A7SW-01 15 87066056 87066056 G A AGBL1 Silent p.L811L 0.23 TCGA-LA-A7SW-01 16 67228615 67228615 G C E2F4 Missense_Mutation p.Q180H 0.06 deleterious(0) benign(0.412) TCGA-LA-A7SW-01 16 67228666 67228666 G C E2F4 Missense_Mutation p.K197N 0.11 deleterious(0) possibly_damaging(0.889) TCGA-LA-A7SW-01 17 18682145 18682145 C T FBXW10 Missense_Mutation p.S898F 0.22 deleterious(0) probably_damaging(0.999) TCGA-LA-A7SW-01 17 19861335 19861335 A C AKAP10 Missense_Mutation p.L290R 0.17 deleterious(0) possibly_damaging(0.544) TCGA-LA-A7SW-01 17 41879221 41879221 C A MPP3 Missense_Mutation p.A536S 0.41 tolerated(0.34) benign(0.016) TCGA-LA-A7SW-01 17 7806740 7806740 A G CHD3 Missense_Mutation p.K1275E 0.08 benign(0.292) TCGA-LA-A7SW-01 17 8395731 8395731 G C MYH10 Missense_Mutation p.L1519V 0.23 benign(0.325) TCGA-LA-A7SW-01 18 10671559 10671559 T C PIEZO2 Missense_Mutation p.T2742A 0.25 deleterious(0) possibly_damaging(0.635) TCGA-LA-A7SW-01 18 13087209 13087209 T C CEP192 Missense_Mutation p.V1937A 0.06 tolerated(0.15) possibly_damaging(0.716) TCGA-LA-A7SW-01 18 706565 706565 T A ENOSF1 Missense_Mutation p.D54V 0.30 deleterious(0) probably_damaging(0.999) TCGA-LA-A7SW-01 18 9550384 9550384 T C PPP4R1 Silent p.L768L 0.17 TCGA-LA-A7SW-01 19 15569388 15569388 C A RASAL3 Silent p.R247R 0.54 TCGA-LA-A7SW-01 19 36330274 36330274 G T NPHS1 Missense_Mutation p.P992T 0.28 deleterious(0.02) possibly_damaging(0.562) TCGA-LA-A7SW-01 19 38858360 38858360 C G CATSPERG Missense_Mutation p.D958E 0.02 tolerated(0.39) possibly_damaging(0.621) TCGA-LA-A7SW-01 19 42596320 42596320 G A POU2F2 Missense_Mutation p.S434F 0.21 tolerated_low_confidence(0.08) probably_damaging(0.982) TCGA-LA-A7SW-01 19 53014520 53014520 T G ZNF578 Missense_Mutation p.F296V 0.04 deleterious(0) probably_damaging(0.989) TCGA-LA-A7SW-01 19 53269535 53269535 G A ZNF600 Missense_Mutation p.H492Y 0.03 deleterious(0.01) probably_damaging(0.964) TCGA-LA-A7SW-01 19 53270546 53270546 C T ZNF600 Missense_Mutation p.V155I 0.11 tolerated(0.52) benign(0.446) TCGA-LA-A7SW-01 19 53958515 53958515 A C ZNF761 RNA 0.15 TCGA-LA-A7SW-01 19 58213730 58213730 T G ZNF154 Missense_Mutation p.K196T 0.11 deleterious(0) probably_damaging(0.946) TCGA-LA-A7SW-01 19 58291097 58291097 C G ZNF586 Nonsense_Mutation p.S381* 0.15 TCGA-LA-A7SW-01 19 9529238 9529238 G C ZNF266 5'UTR 0.18 TCGA-LA-A7SW-01 1 11086874 11086874 C T MASP2 3'UTR 0.16 TCGA-LA-A7SW-01 1 119936576 119936576 G A HAO2 3'UTR 0.36 TCGA-LA-A7SW-01 1 13475123 13475123 G A PRAMEF18 Missense_Mutation p.R336C 0.21 deleterious(0.04) possibly_damaging(0.609) TCGA-LA-A7SW-01 1 145561571 145561571 C A ANKRD35 Missense_Mutation p.S420Y 0.20 deleterious(0.01) possibly_damaging(0.831) TCGA-LA-A7SW-01 1 15386735 15386735 C T KAZN Silent p.G328G 0.13 TCGA-LA-A7SW-01 1 16913567 16913567 C G NBPF1 Missense_Mutation p.Q252H 0.06 deleterious(0.01) benign(0.387) TCGA-LA-A7SW-01 1 20073664 20073664 G A TMCO4 Missense_Mutation p.T202M 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-LA-A7SW-01 1 209796978 209796978 C G LAMB3 Missense_Mutation p.D744H 0.10 deleterious(0) possibly_damaging(0.467) TCGA-LA-A7SW-01 1 214209198 214209198 G T PROX1 3'UTR 0.08 TCGA-LA-A7SW-01 1 221913118 221913118 A C DUSP10 5'UTR 0.18 TCGA-LA-A7SW-01 1 231488729 231488729 C G SPRTN Silent p.V364V 0.14 TCGA-LA-A7SW-01 1 233092090 233092090 C G NTPCR Intron 0.12 TCGA-LA-A7SW-01 1 23848469 23848469 G A E2F2 Silent p.S146S 0.43 TCGA-LA-A7SW-01 1 59147769 59147769 A C MYSM1 Missense_Mutation p.F316C 0.24 tolerated(0.19) benign(0) TCGA-LA-A7SW-01 1 6688750 6688750 A G THAP3 Missense_Mutation p.Q89R 0.28 tolerated(0.12) possibly_damaging(0.472) TCGA-LA-A7SW-01 1 76007183 76007183 G C SLC44A5 5'UTR 0.07 TCGA-LA-A7SW-01 1 876646 876646 G C SAMD11 Missense_Mutation p.E277Q 0.16 tolerated(0.06) possibly_damaging(0.623) TCGA-LA-A7SW-01 20 50305670 50305670 G A ATP9A Silent p.S244S 0.20 TCGA-LA-A7SW-01 20 61588297 61588297 C T SLC17A9 Silent p.G80G 0.23 TCGA-LA-A7SW-01 20 62729410 62729410 G A OPRL1 Silent p.T163T 0.05 TCGA-LA-A7SW-01 21 11058221 11058221 G C BAGE2 RNA 0.15 TCGA-LA-A7SW-01 22 32630935 32630935 C T SLC5A4 Silent p.V270V 0.21 TCGA-LA-A7SW-01 22 32631072 32631072 C T SLC5A4 Missense_Mutation p.E225K 0.20 tolerated(0.32) benign(0.243) TCGA-LA-A7SW-01 22 45110546 45110546 C T PRR5 Silent p.G93G 0.11 TCGA-LA-A7SW-01 2 114252711 114252711 C G CBWD2 Missense_Mutation p.I322M 0.14 tolerated(0.09) benign(0.141) TCGA-LA-A7SW-01 2 179432807 179432807 C T TTN Missense_Mutation p.G26018S 0.15 TCGA-LA-A7SW-01 2 189162267 189162267 G C GULP1 Intron 0.14 TCGA-LA-A7SW-01 2 49247251 49247251 G T FSHR Missense_Mutation p.F91L 0.30 deleterious(0.01) possibly_damaging(0.795) TCGA-LA-A7SW-01 2 71650241 71650241 T C ZNF638 Silent p.A1199A 0.20 TCGA-LA-A7SW-01 2 74750037 74750037 G C DQX1 Missense_Mutation p.L417V 0.15 deleterious(0) possibly_damaging(0.906) TCGA-LA-A7SW-01 2 86308768 86308768 A G POLR1A Silent p.N293N 0.27 TCGA-LA-A7SW-01 2 90193156 90193156 A G IGKV1D-13 Missense_Mutation p.Q28R 0.11 deleterious(0.01) probably_damaging(0.918) TCGA-LA-A7SW-01 3 113890650 113890650 T C DRD3 Missense_Mutation p.T64A 0.26 deleterious(0) probably_damaging(0.999) TCGA-LA-A7SW-01 3 167248955 167248955 A G WDR49 Silent p.N370N 0.15 TCGA-LA-A7SW-01 4 120213797 120213799 ATC - USP53 In_Frame_Del p.I885del 0.60 TCGA-LA-A7SW-01 4 155719019 155719019 C T RBM46 Missense_Mutation p.R70C 0.07 deleterious(0) probably_damaging(1) TCGA-LA-A7SW-01 4 175604077 175604077 C G GLRA3 Missense_Mutation p.M196I 0.20 tolerated(0.05) possibly_damaging(0.903) TCGA-LA-A7SW-01 4 47408784 47408784 T A GABRB1 Missense_Mutation p.D307E 0.47 deleterious(0) probably_damaging(0.997) TCGA-LA-A7SW-01 4 57262886 57262886 G A PPAT Missense_Mutation p.S419L 0.14 deleterious(0) probably_damaging(0.968) TCGA-LA-A7SW-01 4 91229550 91229550 G T CCSER1 Missense_Mutation p.V39F 0.40 deleterious(0.04) possibly_damaging(0.671) TCGA-LA-A7SW-01 5 132200143 132200143 G C GDF9 Missense_Mutation p.S28C 0.12 deleterious(0.03) possibly_damaging(0.885) TCGA-LA-A7SW-01 5 157218727 157218727 G C CLINT1 Missense_Mutation p.P455R 0.06 deleterious(0) possibly_damaging(0.721) TCGA-LA-A7SW-01 5 176025511 176025511 C T GPRIN1 Missense_Mutation p.R442H 0.37 tolerated(0.57) benign(0) TCGA-LA-A7SW-01 5 35779356 35779356 G A SPEF2 Missense_Mutation p.R1452H 0.17 tolerated(0.17) probably_damaging(0.996) TCGA-LA-A7SW-01 6 136599541 136599541 C A BCLAF1 Missense_Mutation p.G160W 0.11 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-LA-A7SW-01 6 170626580 170626580 T C FAM120B Silent p.Y34Y 0.28 TCGA-LA-A7SW-01 6 32166807 32166807 C T NOTCH4 Silent p.E1477E 0.13 TCGA-LA-A7SW-01 6 33419580 33419580 C T SYNGAP1 Missense_Mutation p.T1310M 0.23 tolerated(1) benign(0.011) TCGA-LA-A7SW-01 6 41243826 41243826 G C TREM1 3'UTR 0.22 TCGA-LA-A7SW-01 6 656684 656684 C A HUS1B Silent p.L87L 0.33 TCGA-LA-A7SW-01 7 100238606 100238606 G C TFR2 Missense_Mutation p.F93L 0.50 tolerated(0.1) benign(0.059) TCGA-LA-A7SW-01 7 105664949 105664949 A G CDHR3 Silent p.L733L 0.16 TCGA-LA-A7SW-01 7 123508364 123508364 G A HYAL4 Missense_Mutation p.V13I 0.06 tolerated_low_confidence(0.3) benign(0.003) TCGA-LA-A7SW-01 7 126173498 126173498 G A GRM8 Silent p.I646I 0.28 TCGA-LA-A7SW-01 7 147869551 147869551 T G CNTNAP2 Missense_Mutation p.D997E 0.18 tolerated(0.6) benign(0.186) TCGA-LA-A7SW-01 7 70255879 70255879 C A AUTS2 Missense_Mutation p.T1226K 0.21 deleterious(0) probably_damaging(0.94) TCGA-LA-A7SW-01 7 86415951 86415951 G A GRM3 Silent p.S281S 0.20 TCGA-LA-A7SW-01 8 101245638 101245638 G C SPAG1 Splice_Site p.X663_splice 0.09 TCGA-LA-A7SW-01 8 110293297 110293297 G C NUDCD1 Missense_Mutation p.H310D 0.26 tolerated(0.36) benign(0.016) TCGA-LA-A7SW-01 8 121292323 121292323 G A COL14A1 Missense_Mutation p.E1211K 0.15 deleterious(0) probably_damaging(0.993) TCGA-LA-A7SW-01 8 3081361 3081361 T G CSMD1 Silent p.P1458P 0.17 TCGA-LA-A7SW-01 8 75898234 75898234 C T CRISPLD1 Silent p.T4T 0.31 TCGA-LA-A7SW-01 9 103035245 103035245 C A INVS Silent p.I557I 0.16 TCGA-LA-A7SW-01 9 312114 312114 G A DOCK8 Missense_Mutation p.R230Q 0.34 deleterious(0.03) probably_damaging(0.998) TCGA-LA-A7SW-01 9 32632465 32632465 T G TAF1L Missense_Mutation p.K1038T 0.16 deleterious(0.05) benign(0.133) TCGA-LA-A7SW-01 9 74327167 74327167 T G TMEM2 Silent p.P867P 0.42 TCGA-LA-A7SW-01 9 84532072 84532072 G A SPATA31D5P RNA 0.37 TCGA-LA-A7SW-01 9 99284870 99284870 C T CDC14B Missense_Mutation p.E421K 0.22 tolerated(0.1) benign(0.412) TCGA-LA-A7SW-01 X 107395059 107395059 T C ATG4A Missense_Mutation p.F330L 0.51 deleterious(0.03) probably_damaging(0.996) TCGA-LA-A7SW-01 X 115582647 115582647 C G SLC6A14 Nonsense_Mutation p.S324* 0.07 TCGA-LA-A7SW-01 X 55051225 55051225 A G ALAS2 Missense_Mutation p.L77P 0.07 deleterious(0.01) possibly_damaging(0.853) TCGA-LA-A7SW-01 X 56591119 56591119 G A UBQLN2 Missense_Mutation p.M271I 0.39 tolerated(0.11) benign(0.153) TCGA-MF-A522-01 10 100152204 100152204 C G PYROXD2 Silent p.L349L 0.19 TCGA-MF-A522-01 10 103921890 103921890 G A NOLC1 Missense_Mutation p.G655E 0.37 deleterious_low_confidence(0) unknown(0) TCGA-MF-A522-01 10 106937873 106937873 G T SORCS3 Missense_Mutation p.V651F 0.61 deleterious(0.04) benign(0.057) TCGA-MF-A522-01 10 118435923 118435923 G A HSPA12A Silent p.I459I 0.10 TCGA-MF-A522-01 10 120070406 120070406 T C FAM204A Missense_Mutation p.K222R 0.26 deleterious(0.05) benign(0.117) TCGA-MF-A522-01 10 124380630 124380630 G T DMBT1 Missense_Mutation p.R1652L 0.20 deleterious(0) probably_damaging(0.986) TCGA-MF-A522-01 10 135076395 135076395 A T ADAM8 3'UTR 0.65 TCGA-MF-A522-01 10 13653685 13653685 T A PRPF18 Splice_Site p.X193_splice 0.53 TCGA-MF-A522-01 10 26414496 26414496 C G MYO3A Silent p.V691V 0.18 TCGA-MF-A522-01 10 26459440 26459440 G A MYO3A Missense_Mutation p.D1124N 0.46 tolerated(0.37) benign(0.089) TCGA-MF-A522-01 10 37430809 37430809 T A ANKRD30A Silent p.A272A 0.48 TCGA-MF-A522-01 10 45891317 45891317 G A ALOX5 Missense_Mutation p.D122N 0.24 tolerated(0.11) possibly_damaging(0.667) TCGA-MF-A522-01 10 45891350 45891350 C A ALOX5 Missense_Mutation p.R133S 0.45 tolerated(0.14) benign(0.029) TCGA-MF-A522-01 10 46250417 46250417 C T FAM21C Missense_Mutation p.P425L 0.36 tolerated(0.31) benign(0.002) TCGA-MF-A522-01 10 46999731 46999731 G C GPRIN2 Missense_Mutation p.G284A 0.06 tolerated(0.08) benign(0.033) TCGA-MF-A522-01 10 50870784 50870784 G A CHAT Missense_Mutation p.E645K 0.18 tolerated(0.24) possibly_damaging(0.545) TCGA-MF-A522-01 10 50943215 50943215 C T OGDHL 3'UTR 0.18 TCGA-MF-A522-01 10 61029809 61029809 T C FAM13C Missense_Mutation p.H218R 0.35 tolerated(0.44) benign(0) TCGA-MF-A522-01 10 70190205 70190205 G A DNA2 Silent p.L818L 0.28 TCGA-MF-A522-01 10 70192061 70192061 C G DNA2 Missense_Mutation p.R678P 0.19 deleterious(0) probably_damaging(0.994) TCGA-MF-A522-01 10 74899077 74899077 C T ECD Missense_Mutation p.E504K 0.14 deleterious(0) probably_damaging(1) TCGA-MF-A522-01 10 8056648 8056648 C T TAF3 Silent p.F908F 0.29 TCGA-MF-A522-01 10 88635834 88635834 G T BMPR1A Missense_Mutation p.R20L 0.35 tolerated_low_confidence(0.69) benign(0) TCGA-MF-A522-01 10 92617177 92617177 G A HTR7 Silent p.I84I 0.32 TCGA-MF-A522-01 10 96044612 96044612 A C PLCE1 Missense_Mutation p.D1642A 0.40 deleterious(0.05) probably_damaging(1) TCGA-MF-A522-01 10 97772361 97772361 C T CC2D2B Nonsense_Mutation p.R65* 0.16 TCGA-MF-A522-01 10 97951766 97951766 T G BLNK Missense_Mutation p.D445A 0.35 deleterious(0) probably_damaging(0.997) TCGA-MF-A522-01 11 102221101 102221101 G A BIRC2 Silent p.S172S 0.18 TCGA-MF-A522-01 11 103907500 103907500 C A DDI1 5'UTR 0.38 TCGA-MF-A522-01 11 108122731 108122731 G A ATM Missense_Mutation p.S592N 0.14 tolerated(0.29) benign(0.002) TCGA-MF-A522-01 11 117266340 117266340 C G CEP164 Silent p.L997L 0.17 TCGA-MF-A522-01 11 120139924 120139924 G C POU2F3 Missense_Mutation p.D37H 0.20 deleterious(0) possibly_damaging(0.542) TCGA-MF-A522-01 11 1217921 1217921 A T MUC5AC RNA 0.71 TCGA-MF-A522-01 11 125267812 125267812 C G PKNOX2 Missense_Mutation p.L148V 0.57 deleterious(0) probably_damaging(0.999) TCGA-MF-A522-01 11 14891248 14891248 G C PDE3B 3'UTR 0.09 TCGA-MF-A522-01 11 17743106 17743106 C G MYOD1 3'UTR 0.31 TCGA-MF-A522-01 11 20414500 20414500 G C PRMT3 Missense_Mutation p.E119Q 0.23 benign(0.064) TCGA-MF-A522-01 11 33596419 33596419 C A KIAA1549L Missense_Mutation p.P1171T 0.63 deleterious(0) probably_damaging(0.993) TCGA-MF-A522-01 11 34904966 34904966 C T APIP Missense_Mutation p.E183K 0.25 tolerated(0.94) benign(0.005) TCGA-MF-A522-01 11 5529987 5529987 C A UBQLN3 Missense_Mutation p.A268S 0.70 deleterious(0.02) possibly_damaging(0.817) TCGA-MF-A522-01 11 55872572 55872572 G A OR8H2 Silent p.L18L 0.21 TCGA-MF-A522-01 11 58206958 58206958 T C OR5B12 Missense_Mutation p.I223V 0.73 tolerated_low_confidence(0.07) benign(0.375) TCGA-MF-A522-01 11 58956648 58956648 C A DTX4 Silent p.I337I 0.47 TCGA-MF-A522-01 11 59612849 59612849 G T GIF Nonsense_Mutation p.C26* 0.67 TCGA-MF-A522-01 11 60164034 60164034 G C MS4A14 5'UTR 0.23 TCGA-MF-A522-01 11 6292771 6292771 T C CCKBR Nonstop_Mutation p.*448Rext*13 0.76 TCGA-MF-A522-01 11 62931503 62931503 C A SLC22A25 Silent p.G479G 0.74 TCGA-MF-A522-01 11 64027704 64027704 G A PLCB3 Missense_Mutation p.E577K 0.21 deleterious(0.02) probably_damaging(0.994) TCGA-MF-A522-01 11 64851156 64851156 G A CDCA5 Missense_Mutation p.S29F 0.16 deleterious(0) benign(0.172) TCGA-MF-A522-01 11 65267825 65267826 - T MALAT1 RNA 0.16 TCGA-MF-A522-01 11 66392058 66392058 C T RBM14 Silent p.Y237Y 0.22 TCGA-MF-A522-01 11 67191001 67191003 CTC - CARNS1 In_Frame_Del p.S595del 0.36 TCGA-MF-A522-01 11 68525148 68525148 G A CPT1A Silent p.I762I 0.48 TCGA-MF-A522-01 11 7083733 7083733 G A NLRP14 Missense_Mutation p.G992R 0.75 tolerated(0.06) benign(0.085) TCGA-MF-A522-01 11 71239056 71239056 G A KRTAP5-7 3'UTR 0.52 TCGA-MF-A522-01 11 792901 792901 C T SLC25A22 Silent p.L127L 0.77 TCGA-MF-A522-01 11 87032312 87032312 C T TMEM135 Silent p.F438F 0.37 TCGA-MF-A522-01 11 87908574 87908574 C G RAB38 5'UTR 0.15 TCGA-MF-A522-01 11 92623874 92623874 C T FAT3 Silent p.L4455L 0.12 TCGA-MF-A522-01 11 92624192 92624192 C T FAT3 Silent p.A4561A 0.55 TCGA-MF-A522-01 11 94277505 94277505 G C FUT4 Missense_Mutation p.G69A 0.33 tolerated_low_confidence(0.09) benign(0.02) TCGA-MF-A522-01 11 99944928 99944928 C A CNTN5 Silent p.T494T 0.50 TCGA-MF-A522-01 12 10331968 10331968 G T TMEM52B 5'UTR 0.05 TCGA-MF-A522-01 12 113874593 113874593 C T SDSL Missense_Mutation p.R237W 0.17 deleterious(0) probably_damaging(0.963) TCGA-MF-A522-01 12 119583332 119583332 C A SRRM4 Silent p.G306G 0.73 TCGA-MF-A522-01 12 121476619 121476619 C G OASL Missense_Mutation p.K52N 0.24 deleterious(0.04) benign(0.034) TCGA-MF-A522-01 12 123481393 123481393 C A PITPNM2 Missense_Mutation p.A513S 0.81 deleterious(0.01) probably_damaging(0.993) TCGA-MF-A522-01 12 124221608 124221608 A G ATP6V0A2 Silent p.V276V 0.13 TCGA-MF-A522-01 12 132262812 132262812 C G SFSWAP Missense_Mutation p.S782C 0.19 deleterious_low_confidence(0.04) possibly_damaging(0.843) TCGA-MF-A522-01 12 20522616 20522616 C T PDE3A Missense_Mutation p.S133L 0.07 tolerated(0.68) benign(0.019) TCGA-MF-A522-01 12 21623098 21623098 C T PYROXD1 3'UTR 0.11 TCGA-MF-A522-01 12 22623815 22623815 C T C2CD5 Missense_Mutation p.D797N 0.11 tolerated(0.11) benign(0.074) TCGA-MF-A522-01 12 25362754 25362754 G C KRAS 3'UTR 0.05 TCGA-MF-A522-01 12 2621991 2621991 G A CACNA1C Missense_Mutation p.E411K 0.04 deleterious(0) probably_damaging(1) TCGA-MF-A522-01 12 27075556 27075556 C T ASUN Silent p.L294L 0.04 TCGA-MF-A522-01 12 2715822 2715822 G A CACNA1C Missense_Mutation p.E1088K 0.07 deleterious(0) possibly_damaging(0.447) TCGA-MF-A522-01 12 2788661 2788661 C G CACNA1C Missense_Mutation p.R1763G 0.17 tolerated(0.11) benign(0.02) TCGA-MF-A522-01 12 29659618 29659618 C T TMTC1 3'Flank 0.09 TCGA-MF-A522-01 12 32974328 32974328 A C PKP2 Missense_Mutation p.L703V 0.35 tolerated(0.07) probably_damaging(0.979) TCGA-MF-A522-01 12 3788139 3788139 C G EFCAB4B Missense_Mutation p.E156Q 0.06 deleterious(0) possibly_damaging(0.69) TCGA-MF-A522-01 12 42853595 42853595 C G PRICKLE1 3'UTR 0.73 TCGA-MF-A522-01 12 4736858 4736858 A T AKAP3 Missense_Mutation p.Y404N 0.04 tolerated(0.07) probably_damaging(0.966) TCGA-MF-A522-01 12 48142249 48142249 G A RAPGEF3 Missense_Mutation p.H411Y 0.43 tolerated(0.3) benign(0.012) TCGA-MF-A522-01 12 4920506 4920506 G A KCNA6 Silent p.V433V 0.05 TCGA-MF-A522-01 12 53189723 53189723 G A KRT3 Missense_Mutation p.S35F 0.78 deleterious(0.04) unknown(0) TCGA-MF-A522-01 12 551250 551250 C G CCDC77 3'UTR 0.11 TCGA-MF-A522-01 12 55641852 55641852 T C OR6C74 Missense_Mutation p.S261P 0.77 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-MF-A522-01 12 55820184 55820184 G T OR6C76 Silent p.L49L 0.40 TCGA-MF-A522-01 12 64868054 64868054 G T TBK1 Missense_Mutation p.Q195H 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-MF-A522-01 12 64868122 64868122 C T TBK1 Missense_Mutation p.S218L 0.17 deleterious(0) possibly_damaging(0.639) TCGA-MF-A522-01 12 6562630 6562630 C T TAPBPL Missense_Mutation p.P105S 0.04 deleterious(0) possibly_damaging(0.607) TCGA-MF-A522-01 12 6637136 6637136 A C NCAPD2 Missense_Mutation p.K1008Q 0.05 tolerated(0.17) benign(0.004) TCGA-MF-A522-01 12 7045715 7045715 C G ATN1 Missense_Mutation p.Q429E 0.11 possibly_damaging(0.848) TCGA-MF-A522-01 12 7525977 7525977 C A CD163L1 Silent p.L1223L 0.71 TCGA-MF-A522-01 12 75434808 75434808 C T KCNC2 3'UTR 0.37 TCGA-MF-A522-01 12 7942171 7942171 C A NANOG 5'UTR 0.61 TCGA-MF-A522-01 13 103326724 103326724 G A TPP2 Missense_Mutation p.D1142N 0.17 tolerated(0.23) benign(0.075) TCGA-MF-A522-01 13 103449342 103449342 C T KDELC1 Missense_Mutation p.G67D 0.09 tolerated(0.05) probably_damaging(0.982) TCGA-MF-A522-01 13 20208066 20208066 G C MPHOSPH8 Missense_Mutation p.E60Q 0.13 deleterious_low_confidence(0) probably_damaging(1) TCGA-MF-A522-01 13 23929103 23929103 C G SACS Missense_Mutation p.E550Q 0.12 benign(0.01) TCGA-MF-A522-01 13 28543069 28543069 G T CDX2 Missense_Mutation p.N25K 0.84 deleterious(0.02) probably_damaging(0.913) TCGA-MF-A522-01 13 32729667 32729667 G A FRY Missense_Mutation p.D507N 0.12 deleterious(0) probably_damaging(1) TCGA-MF-A522-01 13 32911480 32911480 C G BRCA2 Silent p.L996L 0.13 TCGA-MF-A522-01 13 32972306 32972306 C T BRCA2 Missense_Mutation p.S3219F 0.13 tolerated(0.26) probably_damaging(0.974) TCGA-MF-A522-01 13 33685950 33685950 C T STARD13 Missense_Mutation p.A858T 0.05 tolerated(0.06) possibly_damaging(0.475) TCGA-MF-A522-01 13 34404898 34404898 A T RFC3 Missense_Mutation p.N206Y 0.07 deleterious(0.03) benign(0.035) TCGA-MF-A522-01 13 40175247 40175247 G A LHFP Missense_Mutation p.S36L 0.26 tolerated(0.13) benign(0.126) TCGA-MF-A522-01 13 46930592 46930592 G A KIAA0226L Silent p.A435A 0.85 TCGA-MF-A522-01 13 52549223 52549223 C T ATP7B Missense_Mutation p.E45K 0.14 deleterious(0.05) possibly_damaging(0.77) TCGA-MF-A522-01 13 96743536 96743536 C A HS6ST3 Missense_Mutation p.F140L 0.22 deleterious(0.03) probably_damaging(0.996) TCGA-MF-A522-01 13 97485020 97485020 G T HS6ST3 Missense_Mutation p.M328I 0.09 tolerated(0.28) benign(0.065) TCGA-MF-A522-01 14 101531866 101531866 C G MIR412 RNA 0.18 TCGA-MF-A522-01 14 105395251 105395251 C T PLD4 Silent p.N150N 0.30 TCGA-MF-A522-01 14 105421023 105421023 C G AHNAK2 Missense_Mutation p.Q255H 0.11 benign(0.022) TCGA-MF-A522-01 14 24868563 24868563 C G NYNRIN Silent p.V37V 0.28 TCGA-MF-A522-01 14 29237351 29237351 G A FOXG1 Missense_Mutation p.G289D 0.24 deleterious(0.01) probably_damaging(0.946) TCGA-MF-A522-01 14 31642491 31642491 C A HECTD1 Missense_Mutation p.A343S 0.28 tolerated(0.21) benign(0.011) TCGA-MF-A522-01 14 34204481 34204481 C T NPAS3 Silent p.I265I 0.37 TCGA-MF-A522-01 14 38723641 38723641 A T CLEC14A 3'UTR 0.42 TCGA-MF-A522-01 14 50901149 50901149 C T MAP4K5 Silent p.L709L 0.23 TCGA-MF-A522-01 14 51223742 51223742 G A NIN Nonsense_Mutation p.Q1336* 0.18 TCGA-MF-A522-01 14 58827710 58827710 C T ARID4A Missense_Mutation p.S677L 0.28 deleterious(0.01) benign(0.298) TCGA-MF-A522-01 14 61442192 61442192 C T TRMT5 Splice_Site p.X482_splice 0.49 TCGA-MF-A522-01 14 70883766 70883766 G T SYNJ2BP 5'Flank 0.28 TCGA-MF-A522-01 14 76905689 76905689 T C ESRRB 5'UTR 0.43 TCGA-MF-A522-01 14 76905690 76905690 G T ESRRB 5'UTR 0.43 TCGA-MF-A522-01 14 89093232 89093232 T C EML5 Missense_Mutation p.T1564A 0.12 tolerated(0.23) benign(0.001) TCGA-MF-A522-01 14 93263860 93263860 C T GOLGA5 Silent p.L26L 0.35 TCGA-MF-A522-01 14 97002284 97002284 G T PAPOLA Silent p.T326T 0.52 TCGA-MF-A522-01 15 23810939 23810939 C T MKRN3 Missense_Mutation p.P4S 0.16 tolerated(0.52) unknown(0) TCGA-MF-A522-01 15 35044732 35044732 C A GJD2 Missense_Mutation p.V305F 0.11 deleterious(0.03) benign(0.037) TCGA-MF-A522-01 15 40331146 40331146 G A SRP14 Silent p.L10L 0.16 TCGA-MF-A522-01 15 43476462 43476462 C T TMEM62 Missense_Mutation p.A537V 0.19 tolerated(0.72) benign(0.003) TCGA-MF-A522-01 15 43621309 43621309 T C LCMT2 Missense_Mutation p.E460G 0.16 tolerated(0.34) benign(0.003) TCGA-MF-A522-01 15 44952774 44952774 C T SPG11 Missense_Mutation p.E100K 0.57 tolerated(0.13) benign(0) TCGA-MF-A522-01 15 48707928 48707928 C A FBN1 Missense_Mutation p.G2619V 0.59 probably_damaging(0.961) TCGA-MF-A522-01 15 51510782 51510782 G A CYP19A1 Silent p.I233I 0.47 TCGA-MF-A522-01 15 72432354 72432354 G A SENP8 Silent p.K130K 0.21 TCGA-MF-A522-01 15 73615548 73615548 T G HCN4 Silent p.P962P 0.55 TCGA-MF-A522-01 15 74924960 74924960 G C EDC3 Missense_Mutation p.S507C 0.58 deleterious(0.01) possibly_damaging(0.478) TCGA-MF-A522-01 15 75094866 75094866 C T CSK 3'UTR 0.17 TCGA-MF-A522-01 15 90168294 90168294 G C TICRR Missense_Mutation p.E1585Q 0.16 deleterious(0.01) possibly_damaging(0.888) TCGA-MF-A522-01 15 90623111 90623111 G A ZNF710 3'UTR 0.20 TCGA-MF-A522-01 16 1270503 1270503 T A CACNA1H Missense_Mutation p.C2191S 0.45 tolerated(0.15) probably_damaging(0.989) TCGA-MF-A522-01 16 1391155 1391155 C G BAIAP3 Missense_Mutation p.S200C 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-MF-A522-01 16 15186420 15186420 T A RRN3 Missense_Mutation p.R47S 0.48 tolerated_low_confidence(0.16) benign(0.133) TCGA-MF-A522-01 16 1552988 1552988 C T TELO2 Silent p.R609R 0.11 TCGA-MF-A522-01 16 16150068 16150068 C T ABCC1 Silent p.I531I 0.19 TCGA-MF-A522-01 16 1814158 1814158 G T MAPK8IP3 Missense_Mutation p.V689L 0.28 tolerated(0.82) benign(0.14) TCGA-MF-A522-01 16 23614832 23614832 T A PALB2 Missense_Mutation p.H1170L 0.44 tolerated(0.1) possibly_damaging(0.605) TCGA-MF-A522-01 16 2487249 2487249 C T CCNF Missense_Mutation p.P156S 0.17 deleterious(0) probably_damaging(1) TCGA-MF-A522-01 16 28157504 28157504 G A XPO6 Silent p.F415F 0.20 TCGA-MF-A522-01 16 28498814 28498814 C T CLN3 Silent p.L141L 0.10 TCGA-MF-A522-01 16 28906247 28906247 G C ATP2A1 Missense_Mutation p.K464N 0.10 tolerated(0.15) possibly_damaging(0.537) TCGA-MF-A522-01 16 29884982 29884982 C A SEZ6L2 Missense_Mutation p.V725F 0.33 deleterious(0) probably_damaging(0.915) TCGA-MF-A522-01 16 30594451 30594451 G C ZNF785 Silent p.L216L 0.16 TCGA-MF-A522-01 16 30904530 30904530 C G BCL7C Intron 0.11 TCGA-MF-A522-01 16 31371760 31371760 A G ITGAX Silent p.A279A 0.31 TCGA-MF-A522-01 16 3297233 3297233 G C MEFV Missense_Mutation p.A457G 0.31 deleterious(0.02) benign(0.058) TCGA-MF-A522-01 16 3714395 3714395 G A TRAP1 Silent p.L483L 0.16 TCGA-MF-A522-01 16 4242254 4242254 C T SRL Missense_Mutation p.G441D 0.03 tolerated(0.64) benign(0.001) TCGA-MF-A522-01 16 46943688 46943688 C G GPT2 Missense_Mutation p.I223M 0.13 deleterious(0.01) possibly_damaging(0.749) TCGA-MF-A522-01 16 4834024 4834024 G T SEPT12 Nonsense_Mutation p.Y140* 0.13 TCGA-MF-A522-01 16 50353172 50353172 C T BRD7 Missense_Mutation p.E637K 0.14 tolerated(0.08) benign(0.423) TCGA-MF-A522-01 16 55736376 55736376 C T SLC6A2 Intron 0.19 TCGA-MF-A522-01 16 67860888 67860888 C A TSNAXIP1 Missense_Mutation p.T472N 0.29 tolerated(0.82) benign(0.001) TCGA-MF-A522-01 16 84227685 84227685 C G ADAD2 Silent p.L164L 0.17 TCGA-MF-A522-01 17 10429105 10429105 G T MYH2 Silent p.R1426R 0.63 TCGA-MF-A522-01 17 11597284 11597284 C A DNAH9 Missense_Mutation p.L1572M 0.26 possibly_damaging(0.864) TCGA-MF-A522-01 17 12569493 12569493 G A MYOCD 5'UTR 0.49 TCGA-MF-A522-01 17 12569494 12569494 C A MYOCD 5'UTR 0.50 TCGA-MF-A522-01 17 12819317 12819317 T A ARHGAP44 Missense_Mutation p.L126M 0.61 tolerated(0.11) possibly_damaging(0.56) TCGA-MF-A522-01 17 17124769 17124769 G A FLCN Intron 0.04 TCGA-MF-A522-01 17 18566390 18566390 C A ZNF286B Silent p.L143L 0.28 TCGA-MF-A522-01 17 26821512 26821512 C A SLC13A2 Silent p.A479A 0.26 TCGA-MF-A522-01 17 27003205 27003205 T C SUPT6H Silent p.G218G 0.53 TCGA-MF-A522-01 17 34183222 34183222 C T C17orf66 Silent p.L411L 0.21 TCGA-MF-A522-01 17 38080479 38080479 C G ORMDL3 Splice_Site 0.57 TCGA-MF-A522-01 17 38416815 38416815 G A WIPF2 Missense_Mutation p.R31K 0.27 tolerated(0.48) benign(0.02) TCGA-MF-A522-01 17 38445734 38445734 G T CDC6 Missense_Mutation p.R21L 0.31 deleterious(0.01) benign(0.131) TCGA-MF-A522-01 17 40030163 40030163 C T ACLY Missense_Mutation p.R848Q 0.28 deleterious(0) possibly_damaging(0.553) TCGA-MF-A522-01 17 40693085 40693085 C T NAGLU Silent p.L294L 0.30 TCGA-MF-A522-01 17 40825838 40825838 C T PLEKHH3 Missense_Mutation p.E105K 0.29 deleterious(0) unknown(0) TCGA-MF-A522-01 17 40838949 40838949 C T CNTNAP1 Missense_Mutation p.A310V 0.21 tolerated(0.11) benign(0.052) TCGA-MF-A522-01 17 41610669 41610669 C T ETV4 Missense_Mutation p.G144D 0.29 tolerated(0.15) possibly_damaging(0.538) TCGA-MF-A522-01 17 4877755 4877755 C G CAMTA2 Missense_Mutation p.Q670H 0.15 deleterious(0) probably_damaging(0.995) TCGA-MF-A522-01 17 49710861 49710861 G T CA10 Silent p.R314R 0.53 TCGA-MF-A522-01 17 56585580 56585580 C G MTMR4 Missense_Mutation p.E203Q 0.13 deleterious(0.03) probably_damaging(1) TCGA-MF-A522-01 17 56661955 56661955 C G TEX14 Missense_Mutation p.R1032T 0.47 deleterious(0.04) benign(0.097) TCGA-MF-A522-01 17 57270956 57270956 C G PRR11 Missense_Mutation p.S169C 0.29 tolerated(0.12) benign(0.037) TCGA-MF-A522-01 17 57290603 57290603 G A SMG8 Missense_Mutation p.E807K 0.16 deleterious(0.02) possibly_damaging(0.572) TCGA-MF-A522-01 17 62145641 62145641 G A ERN1 Silent p.I163I 0.11 TCGA-MF-A522-01 17 62500948 62500948 A C DDX5 Silent p.P19P 0.36 TCGA-MF-A522-01 17 62969525 62969525 C G AMZ2P1 RNA 0.14 TCGA-MF-A522-01 17 6386873 6386873 G A PITPNM3 Missense_Mutation p.P184L 0.23 deleterious(0.01) possibly_damaging(0.752) TCGA-MF-A522-01 17 67257778 67257778 C G ABCA5 Missense_Mutation p.V1143L 0.16 tolerated(0.31) possibly_damaging(0.612) TCGA-MF-A522-01 17 7230110 7230110 C T NEURL4 Missense_Mutation p.E338K 0.12 deleterious(0) probably_damaging(0.994) TCGA-MF-A522-01 17 7358918 7358918 G C CHRNB1 Intron 0.12 TCGA-MF-A522-01 17 73739821 73739821 C A ITGB4 Missense_Mutation p.P997H 0.08 deleterious(0) possibly_damaging(0.89) TCGA-MF-A522-01 17 74046574 74046574 C G SRP68 Missense_Mutation p.E338Q 0.14 deleterious(0.01) probably_damaging(0.984) TCGA-MF-A522-01 17 7578539 7578540 TG - TP53 Frame_Shift_Del p.N131Qfs*17 0.64 TCGA-MF-A522-01 17 79082281 79082281 G C BAIAP2 Missense_Mutation p.D503H 0.36 deleterious(0.02) possibly_damaging(0.519) TCGA-MF-A522-01 17 79891067 79891067 G C PYCR1 3'UTR 0.19 TCGA-MF-A522-01 17 8141377 8141377 C T CTC1 Missense_Mutation p.E207K 0.54 tolerated(0.24) possibly_damaging(0.641) TCGA-MF-A522-01 17 9763349 9763349 C T GLP2R Missense_Mutation p.H286Y 0.10 tolerated(0.38) benign(0.327) TCGA-MF-A522-01 18 14132300 14132300 G A ZNF519 5'UTR 0.22 TCGA-MF-A522-01 18 14542927 14542927 C A POTEC Missense_Mutation p.R73S 0.08 deleterious_low_confidence(0) benign(0.022) TCGA-MF-A522-01 18 21390436 21390436 C T LAMA3 Silent p.L570L 0.27 TCGA-MF-A522-01 18 22669457 22669457 T C ZNF521 Missense_Mutation p.Q1293R 0.54 tolerated(0.06) benign(0.002) TCGA-MF-A522-01 18 31709950 31709950 C T NOL4 Missense_Mutation p.R100Q 0.29 deleterious(0) probably_damaging(0.996) TCGA-MF-A522-01 18 46447851 46447851 G T SMAD7 Missense_Mutation p.T391K 0.28 deleterious(0.01) benign(0.289) TCGA-MF-A522-01 18 47753877 47753877 A T CCDC11 Missense_Mutation p.F473L 0.51 tolerated(0.15) benign(0.023) TCGA-MF-A522-01 18 50912461 50912461 G A DCC Missense_Mutation p.G803E 0.32 deleterious(0) probably_damaging(1) TCGA-MF-A522-01 18 618077 618077 A T CLUL1 Missense_Mutation p.D26V 0.40 deleterious(0) possibly_damaging(0.845) TCGA-MF-A522-01 18 63547739 63547739 A T CDH7 Missense_Mutation p.E656V 0.09 deleterious(0) probably_damaging(1) TCGA-MF-A522-01 18 65179120 65179120 G A DSEL Missense_Mutation p.S919L 0.12 tolerated(0.3) benign(0.005) TCGA-MF-A522-01 18 67614658 67614658 G A CD226 5'UTR 0.41 TCGA-MF-A522-01 18 70450928 70450928 T C NETO1 Missense_Mutation p.T285A 0.54 deleterious(0.02) possibly_damaging(0.582) TCGA-MF-A522-01 18 72186239 72186239 G A CNDP2 Silent p.L422L 0.22 TCGA-MF-A522-01 18 76754925 76754925 G C SALL3 Silent p.V978V 0.49 TCGA-MF-A522-01 19 10602918 10602918 G T KEAP1 Missense_Mutation p.F220L 0.75 tolerated(0.07) benign(0.09) TCGA-MF-A522-01 19 11979603 11979603 G T ZNF439 3'UTR 0.77 TCGA-MF-A522-01 19 14231301 14231301 G A ASF1B Silent p.L193L 0.08 TCGA-MF-A522-01 19 14523922 14523922 G A DDX39A Silent p.S37S 0.13 TCGA-MF-A522-01 19 1452856 1452856 C T APC2 5'UTR 0.82 TCGA-MF-A522-01 19 15338377 15338377 G A EPHX3 Silent p.I318I 0.12 TCGA-MF-A522-01 19 15756552 15756552 C G CYP4F3 Silent p.L74L 0.09 TCGA-MF-A522-01 19 16060444 16060444 G C OR10H4 Silent p.L209L 0.05 TCGA-MF-A522-01 19 17169395 17169395 C G HAUS8 Missense_Mutation p.Q203H 0.20 deleterious(0.02) benign(0.178) TCGA-MF-A522-01 19 17937470 17937470 G A JAK3 3'UTR 0.09 TCGA-MF-A522-01 19 18186675 18186675 G A IL12RB1 Missense_Mutation p.S195F 0.67 deleterious(0) probably_damaging(0.959) TCGA-MF-A522-01 19 19017849 19017849 G C COPE Silent p.L121L 0.14 TCGA-MF-A522-01 19 19162467 19162467 C T ARMC6 Missense_Mutation p.R106C 0.07 tolerated(0.07) benign(0.006) TCGA-MF-A522-01 19 19843860 19843860 C A ZNF14 5'UTR 0.11 TCGA-MF-A522-01 19 20727555 20727555 C G ZNF737 Missense_Mutation p.R485P 0.18 deleterious(0) benign(0.208) TCGA-MF-A522-01 19 20828084 20828084 C T ZNF626 Intron 0.11 TCGA-MF-A522-01 19 21477058 21477058 G C ZNF708 Nonsense_Mutation p.S237* 0.09 TCGA-MF-A522-01 19 22155172 22155172 G T ZNF208 Silent p.P888P 0.58 TCGA-MF-A522-01 19 327971 327971 C A MIER2 Missense_Mutation p.D88Y 0.71 deleterious(0) probably_damaging(0.91) TCGA-MF-A522-01 19 34951434 34951434 A C UBA2 Silent p.G487G 0.12 TCGA-MF-A522-01 19 36034220 36034220 C G GAPDHS Intron 0.23 TCGA-MF-A522-01 19 36034561 36034561 C T GAPDHS Intron 0.18 TCGA-MF-A522-01 19 37482699 37482699 G T ZNF568 Missense_Mutation p.K128N 0.18 deleterious(0.01) benign(0.025) TCGA-MF-A522-01 19 40901707 40901707 G C PRX Missense_Mutation p.S851C 0.18 deleterious(0) possibly_damaging(0.843) TCGA-MF-A522-01 19 41352878 41352878 C T CYP2A6 Missense_Mutation p.E245K 0.38 benign(0.196) TCGA-MF-A522-01 19 41860863 41860863 C G B9D2 Missense_Mutation p.Q90H 0.33 tolerated(0.1) benign(0.001) TCGA-MF-A522-01 19 42482390 42482390 G A ATP1A3 Silent p.L586L 0.31 TCGA-MF-A522-01 19 43268206 43268206 G A PSG8 Nonsense_Mutation p.R98* 0.21 TCGA-MF-A522-01 19 48259033 48259033 A T GLTSCR2 Missense_Mutation p.D417V 0.79 deleterious(0) possibly_damaging(0.868) TCGA-MF-A522-01 19 50017155 50017155 C A FCGRT Silent p.L30L 0.37 TCGA-MF-A522-01 19 50168876 50168876 C T BCL2L12 5'UTR 0.92 TCGA-MF-A522-01 19 51446753 51446753 C A KLK5 3'UTR 0.52 TCGA-MF-A522-01 19 52496124 52496124 C G ZNF615 3'UTR 0.33 TCGA-MF-A522-01 19 54072603 54072603 G A ZNF331 5'UTR 0.32 TCGA-MF-A522-01 19 55176258 55176258 G C LILRB4 Missense_Mutation p.E222Q 0.28 tolerated(0.3) benign(0.009) TCGA-MF-A522-01 19 55543516 55543516 C T GP6 Missense_Mutation p.V106I 0.35 tolerated_low_confidence(0.34) benign(0.016) TCGA-MF-A522-01 19 56244842 56244842 C A NLRP9 Missense_Mutation p.V119F 0.28 tolerated(0.07) probably_damaging(0.99) TCGA-MF-A522-01 19 57066788 57066788 A G ZFP28 3'UTR 0.51 TCGA-MF-A522-01 19 58231722 58231722 G C ZNF671 3'UTR 0.75 TCGA-MF-A522-01 19 58806424 58806424 G A ZNF8 Missense_Mutation p.R417Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-MF-A522-01 19 815700 815700 A G LPPR3 Missense_Mutation p.L76P 0.73 deleterious(0) probably_damaging(0.991) TCGA-MF-A522-01 19 9026256 9026256 C G MUC16 Missense_Mutation p.E12244Q 0.24 benign(0.414) TCGA-MF-A522-01 19 9058291 9058291 G A MUC16 Missense_Mutation p.R9719C 0.21 unknown(0) TCGA-MF-A522-01 1 102269808 102269808 C T OLFM3 Missense_Mutation p.E455K 0.18 deleterious_low_confidence(0.05) benign(0.049) TCGA-MF-A522-01 1 102278642 102278642 A C OLFM3 Intron 0.30 TCGA-MF-A522-01 1 110882431 110882431 C A RBM15 Nonsense_Mutation p.S135* 0.19 TCGA-MF-A522-01 1 111146732 111146732 C T KCNA2 Missense_Mutation p.V225I 0.19 tolerated(0.72) benign(0.003) TCGA-MF-A522-01 1 11186731 11186731 C T MTOR Silent p.P2158P 0.16 TCGA-MF-A522-01 1 112269897 112269897 T A FAM212B Missense_Mutation p.Q196L 0.55 deleterious(0.01) benign(0.165) TCGA-MF-A522-01 1 117311247 117311247 C G CD2 Missense_Mutation p.P300A 0.37 tolerated(0.12) probably_damaging(0.977) TCGA-MF-A522-01 1 11810152 11810152 A T AGTRAP Missense_Mutation p.Q128L 0.22 tolerated(0.1) possibly_damaging(0.614) TCGA-MF-A522-01 1 119467298 119467298 T A TBX15 Missense_Mutation p.T116S 0.17 deleterious(0) probably_damaging(0.998) TCGA-MF-A522-01 1 12089335 12089335 G A MIIP Missense_Mutation p.E238K 0.38 tolerated(0.18) benign(0.347) TCGA-MF-A522-01 1 1431128 1431128 G T ATAD3B Silent p.G626G 0.17 TCGA-MF-A522-01 1 144864238 144864238 G A PDE4DIP Nonsense_Mutation p.Q1953* 0.06 TCGA-MF-A522-01 1 1469569 1469569 G T ATAD3A 3'UTR 0.43 TCGA-MF-A522-01 1 147091997 147091997 G A BCL9 Missense_Mutation p.R679Q 0.06 tolerated(0.24) probably_damaging(0.945) TCGA-MF-A522-01 1 150039793 150039793 G T VPS45 5'UTR 0.06 TCGA-MF-A522-01 1 150807011 150807011 C T ARNT Intron 0.14 TCGA-MF-A522-01 1 151337491 151337491 C T SELENBP1 Missense_Mutation p.M389I 0.74 deleterious(0) possibly_damaging(0.783) TCGA-MF-A522-01 1 152080319 152080319 C G TCHH Missense_Mutation p.E1792Q 0.06 unknown(0) TCGA-MF-A522-01 1 152081084 152081084 C A TCHH Nonsense_Mutation p.E1537* 0.08 TCGA-MF-A522-01 1 152081957 152081957 C G TCHH Missense_Mutation p.E1246Q 0.08 unknown(0) TCGA-MF-A522-01 1 152277632 152277632 G T FLG Missense_Mutation p.Q3244K 0.08 unknown(0) TCGA-MF-A522-01 1 152637069 152637069 C T LCE2D 3'UTR 0.88 TCGA-MF-A522-01 1 152777677 152777677 G C LCE1C Missense_Mutation p.S93C 0.08 deleterious_low_confidence(0) unknown(0) TCGA-MF-A522-01 1 153520180 153520180 G A S100A3 Missense_Mutation p.S95L 0.17 tolerated(0.36) benign(0) TCGA-MF-A522-01 1 154227320 154227320 C T UBAP2L Silent p.F621F 0.08 TCGA-MF-A522-01 1 154680318 154680318 G C KCNN3 3'UTR 0.10 TCGA-MF-A522-01 1 156209401 156209401 C - PMF1 Intron 0.28 TCGA-MF-A522-01 1 15752415 15752415 C G EFHD2 Silent p.L119L 0.21 TCGA-MF-A522-01 1 157811485 157811485 G C CD5L Missense_Mutation p.L3V 0.77 tolerated(0.08) possibly_damaging(0.836) TCGA-MF-A522-01 1 158687010 158687010 G T OR6K3 Missense_Mutation p.A299E 0.07 deleterious(0) probably_damaging(0.98) TCGA-MF-A522-01 1 159174729 159174729 G A DARC 5'Flank 0.83 TCGA-MF-A522-01 1 160811641 160811641 G T CD244 Missense_Mutation p.Q38K 0.14 tolerated(0.3) benign(0.082) TCGA-MF-A522-01 1 165697261 165697261 C T TMCO1 Silent p.%3D 0.09 TCGA-MF-A522-01 1 167407841 167407841 C T CD247 Missense_Mutation p.R89K 0.83 tolerated(0.57) benign(0.038) TCGA-MF-A522-01 1 167409943 167409943 G A CD247 Silent p.F40F 0.14 TCGA-MF-A522-01 1 169356299 169356299 C G BLZF1 Missense_Mutation p.S361C 0.06 deleterious(0.01) possibly_damaging(0.67) TCGA-MF-A522-01 1 169391477 169391477 C T CCDC181 Silent p.R64R 0.11 TCGA-MF-A522-01 1 169446832 169446832 G A SLC19A2 Missense_Mutation p.A123V 0.05 deleterious(0.01) probably_damaging(0.954) TCGA-MF-A522-01 1 169828244 169828244 C T SCYL3 Missense_Mutation p.R417Q 0.08 deleterious(0) probably_damaging(0.996) TCGA-MF-A522-01 1 171492374 171492374 G A PRRC2C Missense_Mutation p.R281K 0.19 unknown(0) TCGA-MF-A522-01 1 17303206 17303206 G T MFAP2 Missense_Mutation p.P80T 0.19 tolerated(0.28) benign(0.049) TCGA-MF-A522-01 1 175087905 175087905 G T TNN Silent p.V865V 0.08 TCGA-MF-A522-01 1 17975161 17975161 C T ARHGEF10L Silent p.L795L 0.14 TCGA-MF-A522-01 1 179851826 179851826 G A TOR1AIP1 Silent p.P63P 0.86 TCGA-MF-A522-01 1 180953825 180953825 G C STX6 Missense_Mutation p.H227D 0.07 deleterious(0) probably_damaging(0.999) TCGA-MF-A522-01 1 181705563 181705563 A T CACNA1E Missense_Mutation p.T1139S 0.74 tolerated(0.1) possibly_damaging(0.678) TCGA-MF-A522-01 1 183853961 183853961 C G RGL1 Missense_Mutation p.I315M 0.08 deleterious(0) probably_damaging(0.974) TCGA-MF-A522-01 1 186039760 186039760 T C HMCN1 Silent p.N2670N 0.06 TCGA-MF-A522-01 1 186304255 186304255 C T TPR Missense_Mutation p.E1640K 0.07 benign(0.292) TCGA-MF-A522-01 1 186305819 186305819 G C TPR Missense_Mutation p.S1505C 0.17 possibly_damaging(0.7) TCGA-MF-A522-01 1 186934636 186934636 C T PLA2G4A Missense_Mutation p.P559S 0.08 deleterious(0) probably_damaging(1) TCGA-MF-A522-01 1 186957511 186957511 G A PLA2G4A Silent p.V707V 0.07 TCGA-MF-A522-01 1 190068140 190068140 C A BRINP3 Missense_Mutation p.A437S 0.08 tolerated(0.4) benign(0.002) TCGA-MF-A522-01 1 193091340 193091340 G A CDC73 Missense_Mutation p.V4M 0.82 tolerated(0.09) benign(0.065) TCGA-MF-A522-01 1 19440256 19440256 C A UBR4 Missense_Mutation p.Q3798H 0.23 probably_damaging(0.948) TCGA-MF-A522-01 1 1961585 1961585 G T GABRD Missense_Mutation p.R408L 0.57 tolerated(0.17) benign(0.007) TCGA-MF-A522-01 1 207851572 207851572 G A CR1L Missense_Mutation p.V103M 0.78 tolerated(0.15) benign(0.132) TCGA-MF-A522-01 1 20879466 20879466 G C FAM43B 5'UTR 0.33 TCGA-MF-A522-01 1 211545581 211545581 G T TRAF5 Missense_Mutation p.G404V 0.09 deleterious(0) probably_damaging(1) TCGA-MF-A522-01 1 212151616 212151616 G C INTS7 Missense_Mutation p.L490V 0.17 tolerated(0.59) possibly_damaging(0.888) TCGA-MF-A522-01 1 212151775 212151775 G C INTS7 Missense_Mutation p.Q437E 0.15 tolerated(0.94) possibly_damaging(0.62) TCGA-MF-A522-01 1 212530302 212530302 T C PPP2R5A Missense_Mutation p.L330S 0.84 deleterious(0) probably_damaging(0.998) TCGA-MF-A522-01 1 21268587 21268587 C G EIF4G3 Missense_Mutation p.D304H 0.17 deleterious_low_confidence(0.02) benign(0.299) TCGA-MF-A522-01 1 21268824 21268824 C G EIF4G3 Splice_Site p.X225_splice 0.21 TCGA-MF-A522-01 1 214705918 214705918 G C PTPN14 Intron 0.10 TCGA-MF-A522-01 1 215901417 215901417 G T USH2A Missense_Mutation p.D4007E 0.08 benign(0.006) TCGA-MF-A522-01 1 21599307 21599307 G A ECE1 Silent p.F126F 0.22 TCGA-MF-A522-01 1 220804379 220804381 AAT - MARK1 In_Frame_Del p.I305del 0.85 TCGA-MF-A522-01 1 223177733 223177733 G A DISP1 Silent p.V998V 0.08 TCGA-MF-A522-01 1 223402684 223402684 G T SUSD4 Missense_Mutation p.H257Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-MF-A522-01 1 227441781 227441781 C T CDC42BPA Missense_Mutation p.R85Q 0.14 deleterious(0) possibly_damaging(0.704) TCGA-MF-A522-01 1 228246937 228246937 C T WNT3A Missense_Mutation p.S277L 0.11 deleterious(0) probably_damaging(1) TCGA-MF-A522-01 1 228290901 228290901 G C C1orf35 Missense_Mutation p.R10G 0.77 deleterious(0) probably_damaging(1) TCGA-MF-A522-01 1 228550284 228550284 C T OBSCN Silent p.T7180T 0.09 TCGA-MF-A522-01 1 228595866 228595866 G C TRIM17 3'UTR 0.07 TCGA-MF-A522-01 1 229773215 229773215 T A URB2 Nonsense_Mutation p.L952* 0.78 TCGA-MF-A522-01 1 230827187 230827187 G A COG2 Silent p.L664L 0.15 TCGA-MF-A522-01 1 230903402 230903402 G A CAPN9 Missense_Mutation p.E218K 0.11 tolerated(0.83) benign(0.008) TCGA-MF-A522-01 1 231471301 231471301 A G EXOC8 3'UTR 0.11 TCGA-MF-A522-01 1 23382467 23382467 C G KDM1A Nonsense_Mutation p.S309* 0.19 TCGA-MF-A522-01 1 234444867 234444867 G C SLC35F3 Missense_Mutation p.G210A 0.74 tolerated(0.07) probably_damaging(0.999) TCGA-MF-A522-01 1 236749616 236749616 C T HEATR1 Missense_Mutation p.E618K 0.05 deleterious(0.01) benign(0.371) TCGA-MF-A522-01 1 236914835 236914835 C T ACTN2 Silent p.S574S 0.08 TCGA-MF-A522-01 1 24019158 24019158 C G RPL11 Silent p.L22L 0.36 TCGA-MF-A522-01 1 240555824 240555824 A C FMN2 Missense_Mutation p.Q1624H 0.07 benign(0.127) TCGA-MF-A522-01 1 243449688 243449688 C T SDCCAG8 Silent p.L179L 0.13 TCGA-MF-A522-01 1 246707878 246707878 G A TFB2M Missense_Mutation p.H322Y 0.07 tolerated(0.35) possibly_damaging(0.703) TCGA-MF-A522-01 1 247202153 247202153 C G ZNF670 Missense_Mutation p.Q50H 0.07 tolerated(0.93) benign(0.038) TCGA-MF-A522-01 1 247901967 247901967 G A OR14K1 Silent p.E17E 0.08 TCGA-MF-A522-01 1 248202041 248202041 C T OR2L2 Missense_Mutation p.H158Y 0.12 deleterious(0.03) possibly_damaging(0.521) TCGA-MF-A522-01 1 26885365 26885365 C T RPS6KA1 Silent p.T393T 0.19 TCGA-MF-A522-01 1 29359702 29359702 T C EPB41 Missense_Mutation p.V437A 0.17 deleterious(0) probably_damaging(0.999) TCGA-MF-A522-01 1 32751169 32751169 G A LCK Missense_Mutation p.R461H 0.14 tolerated(0.14) benign(0.134) TCGA-MF-A522-01 1 32842185 32842185 C T BSDC1 Silent p.E295E 0.17 TCGA-MF-A522-01 1 3301722 3301722 G C PRDM16 Missense_Mutation p.E149Q 0.19 deleterious(0) possibly_damaging(0.755) TCGA-MF-A522-01 1 3807162 3807162 G A C1orf174 Missense_Mutation p.R197W 0.19 deleterious(0) probably_damaging(1) TCGA-MF-A522-01 1 38511319 38511319 G A POU3F1 Missense_Mutation p.A366V 0.22 deleterious(0) probably_damaging(0.953) TCGA-MF-A522-01 1 43868967 43868967 G C SZT2 Missense_Mutation p.E49D 0.17 tolerated(0.3) benign(0.25) TCGA-MF-A522-01 1 44056802 44056802 C G PTPRF Missense_Mutation p.A370G 0.50 tolerated(0.35) possibly_damaging(0.838) TCGA-MF-A522-01 1 44085815 44085815 G A PTPRF Missense_Mutation p.E1721K 0.53 deleterious(0) probably_damaging(0.999) TCGA-MF-A522-01 1 45226153 45226153 G A KIF2C Silent p.L523L 0.21 TCGA-MF-A522-01 1 45292958 45292958 C G PTCH2 Missense_Mutation p.D799H 0.37 deleterious(0) possibly_damaging(0.759) TCGA-MF-A522-01 1 45484911 45484911 C T ZSWIM5 Missense_Mutation p.A925T 0.16 tolerated(1) unknown(0) TCGA-MF-A522-01 1 46656006 46656006 G A POMGNT1 Intron 0.18 TCGA-MF-A522-01 1 48861023 48861023 C G SPATA6 Missense_Mutation p.D262H 0.17 deleterious(0.03) probably_damaging(0.998) TCGA-MF-A522-01 1 50569661 50569661 C A ELAVL4 5'Flank 0.58 TCGA-MF-A522-01 1 52859150 52859150 T A ORC1 Silent p.P349P 0.18 TCGA-MF-A522-01 1 54360051 54360051 C T DIO1 Silent p.F56F 0.36 TCGA-MF-A522-01 1 54606856 54606856 G A CDCP2 Silent p.L226L 0.15 TCGA-MF-A522-01 1 57417828 57417828 C T C8B Missense_Mutation p.E187K 0.38 deleterious(0.01) probably_damaging(0.994) TCGA-MF-A522-01 1 6194898 6194898 G C CHD5 Silent p.L964L 0.16 TCGA-MF-A522-01 1 64606055 64606055 G C ROR1 Missense_Mutation p.E292Q 0.18 deleterious(0.03) possibly_damaging(0.589) TCGA-MF-A522-01 1 6521707 6521707 C A TNFRSF25 Missense_Mutation p.W356C 0.26 deleterious(0) probably_damaging(1) TCGA-MF-A522-01 1 6655607 6655607 C A KLHL21 Missense_Mutation p.A480S 0.16 tolerated(0.41) benign(0.134) TCGA-MF-A522-01 1 76345779 76345779 A T MSH4 Missense_Mutation p.L574F 0.55 deleterious(0) probably_damaging(0.999) TCGA-MF-A522-01 1 87208052 87208052 G T SH3GLB1 Missense_Mutation p.R329I 0.17 deleterious(0) probably_damaging(0.92) TCGA-MF-A522-01 1 89575935 89575935 C T GBP2 Silent p.L459L 0.17 TCGA-MF-A522-01 1 92941709 92941709 G A GFI1 Silent p.N382N 0.53 TCGA-MF-A522-01 1 92941710 92941710 T A GFI1 Missense_Mutation p.N382I 0.53 deleterious(0) probably_damaging(0.942) TCGA-MF-A522-01 20 10394259 10394259 T C MKKS 5'UTR 0.24 TCGA-MF-A522-01 20 16509034 16509034 C G KIF16B Silent p.T33T 0.07 TCGA-MF-A522-01 20 2308909 2308909 A T TGM3 Nonsense_Mutation p.K411* 0.36 TCGA-MF-A522-01 20 23545622 23545622 C T CST9L Missense_Mutation p.S136N 0.31 tolerated(0.33) benign(0.004) TCGA-MF-A522-01 20 23966593 23966593 G A GGTLC1 Missense_Mutation p.S108F 0.54 deleterious(0) probably_damaging(1) TCGA-MF-A522-01 20 2636821 2636821 G C NOP56 Intron 0.31 TCGA-MF-A522-01 20 33706270 33706270 G A EDEM2 Intron 0.18 TCGA-MF-A522-01 20 33706316 33706316 G C EDEM2 Intron 0.23 TCGA-MF-A522-01 20 34021511 34021511 C G GDF5 3'UTR 0.08 TCGA-MF-A522-01 20 36642080 36642080 C T TTI1 Missense_Mutation p.E47K 0.12 deleterious(0.01) benign(0.023) TCGA-MF-A522-01 20 44511598 44511598 G A ZSWIM1 Missense_Mutation p.E123K 0.20 tolerated(0.4) benign(0.004) TCGA-MF-A522-01 20 44594390 44594390 C T ZNF335 Missense_Mutation p.E327K 0.17 deleterious(0) benign(0.297) TCGA-MF-A522-01 20 44669397 44669397 C A SLC12A5 Intron 0.38 TCGA-MF-A522-01 20 47649771 47649771 G A ARFGEF2 3'UTR 0.08 TCGA-MF-A522-01 20 47896871 47896871 G A ZNFX1 5'Flank 0.24 TCGA-MF-A522-01 20 50769410 50769410 G A ZFP64 Missense_Mutation p.R441C 0.20 deleterious(0) probably_damaging(0.973) TCGA-MF-A522-01 20 5163061 5163061 C T CDS2 Silent p.V186V 0.20 TCGA-MF-A522-01 20 55028122 55028122 G T CASS4 Missense_Mutation p.K630N 0.51 deleterious(0.01) possibly_damaging(0.836) TCGA-MF-A522-01 20 55953258 55953258 G A RAE1 3'UTR 0.22 TCGA-MF-A522-01 20 58519707 58519707 C T FAM217B Missense_Mutation p.H237Y 0.19 tolerated(0.94) benign(0.015) TCGA-MF-A522-01 20 5953821 5953821 A C MCM8 Silent p.L458L 0.58 TCGA-MF-A522-01 20 6100191 6100191 G A FERMT1 Missense_Mutation p.S4F 0.21 deleterious(0.01) benign(0.27) TCGA-MF-A522-01 20 62198523 62198523 C T HELZ2 Missense_Mutation p.E730K 0.31 tolerated(0.18) benign(0.016) TCGA-MF-A522-01 20 62221554 62221554 G A GMEB2 Missense_Mutation p.S494L 0.23 deleterious(0.04) benign(0.022) TCGA-MF-A522-01 20 62680110 62680110 G A SOX18 Silent p.P188P 0.58 TCGA-MF-A522-01 21 17196355 17196355 C T USP25 Intron 0.25 TCGA-MF-A522-01 21 30329779 30329779 C T LTN1 Missense_Mutation p.A969T 0.47 tolerated(0.26) benign(0.011) TCGA-MF-A522-01 21 31709385 31709385 C - KRTAP27-1 Frame_Shift_Del p.G201Vfs*11 0.18 TCGA-MF-A522-01 21 34072171 34072171 C T SYNJ1 Silent p.Q191Q 0.25 TCGA-MF-A522-01 21 34619192 34619192 G C IFNAR2 Missense_Mutation p.D131H 0.11 tolerated(0.17) probably_damaging(0.946) TCGA-MF-A522-01 21 37783774 37783774 G T CHAF1B Missense_Mutation p.M311I 0.17 tolerated(0.71) benign(0) TCGA-MF-A522-01 21 38862503 38862503 C T DYRK1A Nonsense_Mutation p.R231* 0.16 TCGA-MF-A522-01 21 40720491 40720491 C T HMGN1 Missense_Mutation p.E10K 0.23 tolerated(0.19) benign(0.003) TCGA-MF-A522-01 21 42813773 42813773 G A MX1 Silent p.Q287Q 0.16 TCGA-MF-A522-01 21 45876982 45876982 C T LRRC3 Missense_Mutation p.A152V 0.46 tolerated(0.05) benign(0.197) TCGA-MF-A522-01 22 23055535 23055535 C G IGLV3-21 Silent p.V66V 0.23 TCGA-MF-A522-01 22 32297775 32297775 G T DEPDC5 Missense_Mutation p.A1466S 0.58 tolerated(0.1) benign(0.41) TCGA-MF-A522-01 22 32495333 32495333 G A SLC5A1 Missense_Mutation p.E482K 0.19 deleterious(0) probably_damaging(0.996) TCGA-MF-A522-01 22 33777953 33777953 T C LARGE Silent p.S361S 0.55 TCGA-MF-A522-01 22 35947803 35947803 G A RASD2 Silent p.K175K 0.17 TCGA-MF-A522-01 22 37771107 37771107 G A ELFN2 Silent p.I156I 0.21 TCGA-MF-A522-01 22 38097473 38097473 G A TRIOBP Missense_Mutation p.G34E 0.10 tolerated_low_confidence(0.18) benign(0.002) TCGA-MF-A522-01 2 101009969 101009969 C G CHST10 Missense_Mutation p.C270S 0.54 deleterious(0) probably_damaging(0.998) TCGA-MF-A522-01 2 102818045 102818045 C T IL1RL2 Silent p.F173F 0.46 TCGA-MF-A522-01 2 107029685 107029685 T C RGPD3 Silent p.A1707A 0.30 TCGA-MF-A522-01 2 111525971 111525971 G T ACOXL Missense_Mutation p.R2I 0.46 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-MF-A522-01 2 111556199 111556199 G T ACOXL Missense_Mutation p.D120Y 0.50 deleterious(0.03) possibly_damaging(0.526) TCGA-MF-A522-01 2 120231030 120231030 C G SCTR Missense_Mutation p.R135P 0.29 tolerated(0.08) possibly_damaging(0.829) TCGA-MF-A522-01 2 120885383 120885383 C T EPB41L5 Missense_Mutation p.A486V 0.25 tolerated(0.15) benign(0.004) TCGA-MF-A522-01 2 141128300 141128300 C T LRP1B Missense_Mutation p.D3663N 0.12 possibly_damaging(0.822) TCGA-MF-A522-01 2 14774586 14774586 C T FAM84A Silent p.I161I 0.24 TCGA-MF-A522-01 2 149806875 149806875 G - KIF5C Frame_Shift_Del p.D290Tfs*29 0.17 TCGA-MF-A522-01 2 163302718 163302718 T C KCNH7 Missense_Mutation p.D455G 0.11 deleterious(0) probably_damaging(0.999) TCGA-MF-A522-01 2 166201349 166201349 C A SCN2A Missense_Mutation p.D949E 0.23 tolerated(0.05) possibly_damaging(0.72) TCGA-MF-A522-01 2 16745294 16745294 C T FAM49A Silent p.V87V 0.09 TCGA-MF-A522-01 2 170063134 170063134 G T LRP2 Missense_Mutation p.P2366T 0.24 possibly_damaging(0.517) TCGA-MF-A522-01 2 170336041 170336041 T C BBS5 5'UTR 0.59 TCGA-MF-A522-01 2 170917915 170917915 C A UBR3 Missense_Mutation p.Q1661K 0.22 tolerated(0.42) benign(0.033) TCGA-MF-A522-01 2 179259085 179259085 A G OSBPL6 Silent p.Q898Q 0.21 TCGA-MF-A522-01 2 179398123 179398123 G T TTN Missense_Mutation p.P34407T 0.30 TCGA-MF-A522-01 2 179584920 179584920 T C TTN Missense_Mutation p.I7817V 0.59 TCGA-MF-A522-01 2 179598441 179598441 C A TTN Missense_Mutation p.L5225F 0.53 TCGA-MF-A522-01 2 179615800 179615800 A C TTN Intron 0.10 TCGA-MF-A522-01 2 183584803 183584803 C G DNAJC10 Missense_Mutation p.L92V 0.25 deleterious(0.01) probably_damaging(0.946) TCGA-MF-A522-01 2 186673198 186673198 G A FSIP2 Missense_Mutation p.V6478I 0.50 probably_damaging(0.996) TCGA-MF-A522-01 2 202580392 202580392 C G ALS2 Intron 0.60 TCGA-MF-A522-01 2 203630271 203630271 C T FAM117B Silent p.L518L 0.30 TCGA-MF-A522-01 2 204001484 204001484 G A NBEAL1 Missense_Mutation p.E1489K 0.23 tolerated(0.2) benign(0.265) TCGA-MF-A522-01 2 207432005 207432005 C A ADAM23 Missense_Mutation p.Q485K 0.31 tolerated(0.38) benign(0.167) TCGA-MF-A522-01 2 208693094 208693094 C G PLEKHM3 Missense_Mutation p.E745D 0.25 tolerated(0.34) possibly_damaging(0.629) TCGA-MF-A522-01 2 211163223 211163223 G A MYL1 Silent p.V75V 0.12 TCGA-MF-A522-01 2 21228834 21228834 C T APOB Missense_Mutation p.E3636K 0.11 benign(0.354) TCGA-MF-A522-01 2 215593401 215593401 C T BARD1 Silent p.%3D 0.13 TCGA-MF-A522-01 2 228883176 228883176 A G SPHKAP Silent p.G798G 0.55 TCGA-MF-A522-01 2 233201275 233201275 C T DIS3L2 Missense_Mutation p.H865Y 0.45 tolerated_low_confidence(1) benign(0.026) TCGA-MF-A522-01 2 234173704 234173704 G C ATG16L1 Missense_Mutation p.E186Q 0.38 deleterious(0.05) benign(0.21) TCGA-MF-A522-01 2 234526513 234526513 G A UGT1A8 Missense_Mutation p.E54K 0.26 deleterious(0.05) benign(0.232) TCGA-MF-A522-01 2 239013370 239013370 G T ESPNL Missense_Mutation p.A187S 0.24 tolerated(0.09) benign(0.328) TCGA-MF-A522-01 2 242004991 242004991 C A SNED1 Missense_Mutation p.A997D 0.12 deleterious(0.01) benign(0.16) TCGA-MF-A522-01 2 27447708 27447708 C G CAD Silent p.V450V 0.20 TCGA-MF-A522-01 2 27448646 27448646 C T CAD Missense_Mutation p.S565F 0.21 deleterious(0) probably_damaging(0.962) TCGA-MF-A522-01 2 27559103 27559103 G C GTF3C2 Silent p.L439L 0.08 TCGA-MF-A522-01 2 27603239 27603239 C A ZNF513 Intron 0.29 TCGA-MF-A522-01 2 29294960 29294960 C G C2orf71 Missense_Mutation p.R723T 0.10 tolerated(0.22) possibly_damaging(0.535) TCGA-MF-A522-01 2 29296605 29296605 C T C2orf71 Missense_Mutation p.D175N 0.07 deleterious(0.05) probably_damaging(0.965) TCGA-MF-A522-01 2 32379637 32379637 C T SPAST 3'UTR 0.12 TCGA-MF-A522-01 2 39046280 39046280 G A DHX57 Missense_Mutation p.P1100S 0.10 deleterious(0) probably_damaging(1) TCGA-MF-A522-01 2 44079608 44079608 A T ABCG8 Missense_Mutation p.Q226L 0.26 deleterious(0) probably_damaging(1) TCGA-MF-A522-01 2 47233126 47233126 G A TTC7A Silent p.Q377Q 0.10 TCGA-MF-A522-01 2 48059736 48059736 C T FBXO11 Missense_Mutation p.G412E 0.18 deleterious(0) probably_damaging(1) TCGA-MF-A522-01 2 55804450 55804450 C G SMEK2 Splice_Site p.X536_splice 0.62 TCGA-MF-A522-01 2 68740234 68740234 G A APLF Missense_Mutation p.D122N 0.10 deleterious(0.01) possibly_damaging(0.886) TCGA-MF-A522-01 2 88485573 88485573 G A THNSL2 Silent p.L462L 0.08 TCGA-MF-A522-01 2 8926363 8926363 G A KIDINS220 Nonsense_Mutation p.R638* 0.17 TCGA-MF-A522-01 2 90249193 90249193 G A IGKV1D-43 Missense_Mutation p.G50D 0.19 tolerated(0.89) benign(0.007) TCGA-MF-A522-01 2 96581758 96581758 C G ANKRD36C Missense_Mutation p.E807Q 0.30 deleterious_low_confidence(0.02) benign(0.413) TCGA-MF-A522-01 3 100432575 100432575 C T TFG Nonsense_Mutation p.Q16* 0.10 TCGA-MF-A522-01 3 108102519 108102519 C T MYH15 Missense_Mutation p.E1917K 0.17 deleterious(0) possibly_damaging(0.677) TCGA-MF-A522-01 3 108149702 108149702 G A MYH15 Nonsense_Mutation p.Q1117* 0.16 TCGA-MF-A522-01 3 111671476 111671476 G A PHLDB2 Missense_Mutation p.D897N 0.08 deleterious(0) possibly_damaging(0.76) TCGA-MF-A522-01 3 111842496 111842496 C T GCSAM Missense_Mutation p.E117K 0.14 tolerated(0.23) probably_damaging(0.987) TCGA-MF-A522-01 3 112358289 112358289 G A CCDC80 Missense_Mutation p.S155L 0.03 deleterious(0) possibly_damaging(0.849) TCGA-MF-A522-01 3 113164066 113164066 G A SPICE1 3'UTR 0.09 TCGA-MF-A522-01 3 113588431 113588431 G C GRAMD1C Silent p.L84L 0.07 TCGA-MF-A522-01 3 119150855 119150855 G T TMEM39A Silent p.L480L 0.07 TCGA-MF-A522-01 3 119246643 119246643 C A CD80 Missense_Mutation p.R281I 0.18 tolerated(0.08) unknown(0) TCGA-MF-A522-01 3 121207482 121207482 C T POLQ Silent p.K1432K 0.45 TCGA-MF-A522-01 3 121209004 121209004 G A POLQ Missense_Mutation p.S925F 0.08 tolerated(0.59) benign(0.169) TCGA-MF-A522-01 3 121415676 121415676 C T GOLGB1 Missense_Mutation p.E1232K 0.06 benign(0.162) TCGA-MF-A522-01 3 121825191 121825191 G A CD86 Missense_Mutation p.D183N 0.07 tolerated(0.14) possibly_damaging(0.566) TCGA-MF-A522-01 3 122598238 122598238 G C DIRC2 3'UTR 0.25 TCGA-MF-A522-01 3 122631792 122631792 C T SEMA5B Missense_Mutation p.V929I 0.10 tolerated(0.4) benign(0.013) TCGA-MF-A522-01 3 125648232 125648232 C T ALG1L Missense_Mutation p.R176H 0.18 deleterious_low_confidence(0) possibly_damaging(0.522) TCGA-MF-A522-01 3 126915863 126915863 A - C3orf56 Frame_Shift_Del p.D112Afs*4 0.08 TCGA-MF-A522-01 3 129183526 129183526 C T IFT122 Silent p.I206I 0.07 TCGA-MF-A522-01 3 131100679 131100679 G A NUDT16 Missense_Mutation p.E11K 0.15 deleterious_low_confidence(0.02) unknown(0) TCGA-MF-A522-01 3 135741942 135741942 G A PPP2R3A Intron 0.05 TCGA-MF-A522-01 3 136059338 136059338 C G STAG1 Missense_Mutation p.D1223H 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-MF-A522-01 3 1367501 1367501 C T CNTN6 Missense_Mutation p.P317S 0.25 tolerated(0.41) possibly_damaging(0.723) TCGA-MF-A522-01 3 138402532 138402532 T A PIK3CB Nonsense_Mutation p.K805* 0.08 TCGA-MF-A522-01 3 139171863 139171863 G C RBP2 3'UTR 0.10 TCGA-MF-A522-01 3 142051259 142051259 C G XRN1 Missense_Mutation p.E1393Q 0.10 tolerated_low_confidence(0.36) benign(0.12) TCGA-MF-A522-01 3 147128133 147128133 C A ZIC1 Silent p.G78G 0.16 TCGA-MF-A522-01 3 147128181 147128181 C T ZIC1 Silent p.F94F 0.13 TCGA-MF-A522-01 3 148558536 148558536 A C CPB1 Silent p.T112T 0.14 TCGA-MF-A522-01 3 153839797 153839797 G A ARHGEF26 Missense_Mutation p.E6K 0.10 deleterious_low_confidence(0.04) benign(0.154) TCGA-MF-A522-01 3 155206530 155206530 G C PLCH1 Missense_Mutation p.R808G 0.46 deleterious(0) probably_damaging(1) TCGA-MF-A522-01 3 159614513 159614513 C A IQCJ-SCHIP1 Missense_Mutation p.H548N 0.72 deleterious(0.01) possibly_damaging(0.79) TCGA-MF-A522-01 3 167525042 167525042 G C SERPINI1 Missense_Mutation p.E298Q 0.11 deleterious(0.01) possibly_damaging(0.891) TCGA-MF-A522-01 3 170928981 170928981 G C TNIK Missense_Mutation p.S77C 0.07 deleterious(0) unknown(0) TCGA-MF-A522-01 3 180328496 180328496 C T TTC14 3'UTR 0.14 TCGA-MF-A522-01 3 182583481 182583481 G C ATP11B Missense_Mutation p.E480Q 0.05 tolerated(0.16) benign(0.014) TCGA-MF-A522-01 3 182590204 182590204 A G ATP11B Missense_Mutation p.I643V 0.09 tolerated(0.72) benign(0.007) TCGA-MF-A522-01 3 183910898 183910898 G C ABCF3 Missense_Mutation p.E587Q 0.07 tolerated(0.41) benign(0.065) TCGA-MF-A522-01 3 186502252 186502252 G A EIF4A2 Missense_Mutation p.D21N 0.12 tolerated_low_confidence(0.09) benign(0.012) TCGA-MF-A522-01 3 191098010 191098010 C T CCDC50 Nonsense_Mutation p.Q347* 0.13 TCGA-MF-A522-01 3 193052764 193052764 G C ATP13A5 Silent p.V356V 0.07 TCGA-MF-A522-01 3 196229878 196229878 C T RNF168 Missense_Mutation p.R56H 0.34 deleterious(0.02) benign(0.176) TCGA-MF-A522-01 3 196865218 196865218 T G DLG1 Missense_Mutation p.D286A 0.04 tolerated(0.06) probably_damaging(0.929) TCGA-MF-A522-01 3 196865219 196865219 C A DLG1 Missense_Mutation p.D286Y 0.04 deleterious(0) probably_damaging(0.992) TCGA-MF-A522-01 3 27157577 27157577 C G NEK10 Missense_Mutation p.E1135Q 0.22 tolerated(0.13) probably_damaging(0.999) TCGA-MF-A522-01 3 27493977 27493977 C T SLC4A7 Missense_Mutation p.E16K 0.19 deleterious(0) probably_damaging(0.995) TCGA-MF-A522-01 3 38521166 38521166 C T ACVR2B Intron 0.51 TCGA-MF-A522-01 3 432689 432689 G C CHL1 Missense_Mutation p.E880Q 0.21 tolerated(0.05) benign(0.031) TCGA-MF-A522-01 3 4819008 4819008 G A ITPR1 Missense_Mutation p.D2066N 0.37 tolerated(0.06) probably_damaging(0.989) TCGA-MF-A522-01 3 53886944 53886944 A G IL17RB Missense_Mutation p.Y134C 0.73 deleterious(0) probably_damaging(1) TCGA-MF-A522-01 3 53925908 53925908 G T SELK 5'UTR 0.26 TCGA-MF-A522-01 3 73024125 73024125 C T GXYLT2 Intron 0.50 TCGA-MF-A522-01 3 73432388 73432388 G C PDZRN3 3'UTR 0.90 TCGA-MF-A522-01 3 74420416 74420416 C T CNTN3 Missense_Mutation p.V197M 0.21 tolerated(0.05) probably_damaging(1) TCGA-MF-A522-01 3 9490288 9490288 G C SETD5 Missense_Mutation p.D774H 0.08 deleterious(0) probably_damaging(0.999) TCGA-MF-A522-01 3 9517188 9517188 C G SETD5 Missense_Mutation p.R1248G 0.24 deleterious(0.01) benign(0.171) TCGA-MF-A522-01 4 100540230 100540230 G A MTTP Missense_Mutation p.E773K 0.15 deleterious(0) possibly_damaging(0.771) TCGA-MF-A522-01 4 104067070 104067070 C T CENPE Silent p.E1443E 0.19 TCGA-MF-A522-01 4 106744385 106744385 C T GSTCD Intron 0.18 TCGA-MF-A522-01 4 109841752 109841752 T C COL25A1 Silent p.L239L 0.29 TCGA-MF-A522-01 4 125631889 125631889 G A ANKRD50 5'UTR 0.39 TCGA-MF-A522-01 4 134071441 134071441 C T PCDH10 Missense_Mutation p.S49L 0.72 deleterious(0) possibly_damaging(0.687) TCGA-MF-A522-01 4 153244284 153244284 T C FBXW7 Missense_Mutation p.S625G 0.63 tolerated(0.38) probably_damaging(0.999) TCGA-MF-A522-01 4 153893583 153893583 G A FHDC1 Missense_Mutation p.E425K 0.34 deleterious(0) probably_damaging(0.99) TCGA-MF-A522-01 4 155665970 155665970 C T LRAT Silent p.F164F 0.30 TCGA-MF-A522-01 4 167713442 167713442 T A SPOCK3 Splice_Site p.X200_splice 0.53 TCGA-MF-A522-01 4 177061046 177061046 G A WDR17 Missense_Mutation p.G479R 0.27 deleterious(0.01) probably_damaging(0.993) TCGA-MF-A522-01 4 25675970 25675970 G T SLC34A2 Silent p.G423G 0.17 TCGA-MF-A522-01 4 43032473 43032474 - T GRXCR1 Frame_Shift_Ins p.C264Lfs*16 0.24 TCGA-MF-A522-01 4 47548679 47548679 G A ATP10D Missense_Mutation p.D479N 0.26 tolerated(0.09) possibly_damaging(0.58) TCGA-MF-A522-01 4 48852020 48852020 G T OCIAD1 Nonsense_Mutation p.E100* 0.15 TCGA-MF-A522-01 4 5624406 5624406 G C EVC2 Missense_Mutation p.R787G 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-MF-A522-01 4 56730445 56730445 G T EXOC1 Missense_Mutation p.S103I 0.46 tolerated(0.32) probably_damaging(0.921) TCGA-MF-A522-01 4 65180404 65180404 T C TECRL Silent p.G171G 0.45 TCGA-MF-A522-01 4 72363325 72363325 C T SLC4A4 Silent p.L694L 0.04 TCGA-MF-A522-01 4 79285082 79285082 A T FRAS1 Missense_Mutation p.T866S 0.34 benign(0.023) TCGA-MF-A522-01 4 85561988 85561988 C G CDS1 Intron 0.33 TCGA-MF-A522-01 4 88732568 88732568 G C IBSP Missense_Mutation p.E154Q 0.05 deleterious(0.01) possibly_damaging(0.791) TCGA-MF-A522-01 4 88940707 88940707 C G PKD2 Silent p.L231L 0.17 TCGA-MF-A522-01 4 94343946 94343946 G T GRID2 Nonsense_Mutation p.E458* 0.32 TCGA-MF-A522-01 5 1057654 1057654 C T SLC12A7 Silent p.L986L 0.23 TCGA-MF-A522-01 5 115803352 115803352 C T SEMA6A Silent p.K607K 0.22 TCGA-MF-A522-01 5 129519960 129519960 G T CHSY3 Silent p.R375R 0.22 TCGA-MF-A522-01 5 130828382 130828382 G C RAPGEF6 Missense_Mutation p.L542V 0.04 deleterious(0) possibly_damaging(0.868) TCGA-MF-A522-01 5 131730112 131730112 C T SLC22A5 3'UTR 0.16 TCGA-MF-A522-01 5 133295593 133295593 G T C5orf15 Silent p.T86T 0.39 TCGA-MF-A522-01 5 134050849 134050849 G A SEC24A Missense_Mutation p.E955K 0.20 tolerated(0.15) benign(0.011) TCGA-MF-A522-01 5 136314384 136314384 C T SPOCK1 Missense_Mutation p.E427K 0.19 deleterious_low_confidence(0.01) benign(0.112) TCGA-MF-A522-01 5 140051037 140051037 G A DND1 Silent p.F301F 0.23 TCGA-MF-A522-01 5 140346697 140346697 C G PCDHAC2 Missense_Mutation p.R116G 0.13 tolerated(0.14) benign(0.239) TCGA-MF-A522-01 5 140449 140449 C G PLEKHG4B Silent p.P9P 0.40 TCGA-MF-A522-01 5 140529753 140529753 C T PCDHB6 5'Flank 0.38 TCGA-MF-A522-01 5 140581504 140581504 G T PCDHB11 Silent p.A719A 0.39 TCGA-MF-A522-01 5 140736898 140736898 C G PCDHGA4 Missense_Mutation p.L711V 0.20 deleterious_low_confidence(0.01) probably_damaging(0.94) TCGA-MF-A522-01 5 140762932 140762932 G A PCDHGA7 Missense_Mutation p.E156K 0.25 tolerated_low_confidence(0.19) benign(0.124) TCGA-MF-A522-01 5 140802879 140802879 G C PCDHGA11 Silent p.V695V 0.29 TCGA-MF-A522-01 5 141038155 141038155 G A ARAP3 Silent p.V1134V 0.44 TCGA-MF-A522-01 5 148715225 148715225 G A AFAP1L1 Silent p.L741L 0.20 TCGA-MF-A522-01 5 153429577 153429577 G T MFAP3 Missense_Mutation p.G99C 0.38 deleterious(0.01) probably_damaging(0.989) TCGA-MF-A522-01 5 159834982 159834982 C T SLU7 Missense_Mutation p.D305N 0.32 tolerated(0.05) benign(0.053) TCGA-MF-A522-01 5 167553960 167553960 G T TENM2 Missense_Mutation p.G804V 0.18 tolerated(0.3) benign(0) TCGA-MF-A522-01 5 22142988 22142988 C T CDH12 Intron 0.16 TCGA-MF-A522-01 5 23509662 23509662 T C PRDM9 Silent p.Y51Y 0.40 TCGA-MF-A522-01 5 24491890 24491890 A G CDH10 Silent p.H557H 0.53 TCGA-MF-A522-01 5 37181002 37181002 C T C5orf42 Missense_Mutation p.E1843K 0.25 tolerated(0.06) benign(0.015) TCGA-MF-A522-01 5 38451420 38451420 G A EGFLAM Silent p.V857V 0.11 TCGA-MF-A522-01 5 41000793 41000793 G C MROH2B Missense_Mutation p.P1446R 0.44 deleterious(0) probably_damaging(0.914) TCGA-MF-A522-01 5 41057244 41057244 C G MROH2B Missense_Mutation p.E296Q 0.08 tolerated(0.38) benign(0.006) TCGA-MF-A522-01 5 43529922 43529922 C G PAIP1 Missense_Mutation p.E438Q 0.09 deleterious(0.01) possibly_damaging(0.833) TCGA-MF-A522-01 5 64483842 64483842 C T ADAMTS6 Splice_Site p.X970_splice 0.20 TCGA-MF-A522-01 5 66462781 66462781 G A MAST4 Missense_Mutation p.D2592N 0.33 possibly_damaging(0.839) TCGA-MF-A522-01 5 71491070 71491070 C T MAP1B Missense_Mutation p.P630S 0.48 unknown(0) TCGA-MF-A522-01 5 75993880 75993880 G C IQGAP2 Silent p.L1425L 0.25 TCGA-MF-A522-01 5 7831864 7831864 C T C5orf49 3'UTR 0.12 TCGA-MF-A522-01 5 82499501 82499501 C T XRCC4 Nonsense_Mutation p.R205* 0.25 TCGA-MF-A522-01 5 89705495 89705495 G C CETN3 5'UTR 0.18 TCGA-MF-A522-01 5 89769931 89769931 G A MBLAC2 Missense_Mutation p.S60F 0.23 tolerated(0.07) benign(0.203) TCGA-MF-A522-01 5 89769959 89769959 G A MBLAC2 Missense_Mutation p.R51C 0.33 tolerated(0.1) probably_damaging(0.939) TCGA-MF-A522-01 5 95158370 95158370 G A GLRX 5'UTR 0.26 TCGA-MF-A522-01 6 100055048 100055049 - A PRDM13 Frame_Shift_Ins p.V49Gfs*65 0.25 TCGA-MF-A522-01 6 100988161 100988161 C G ASCC3 Missense_Mutation p.D1885H 0.32 deleterious(0) probably_damaging(0.948) TCGA-MF-A522-01 6 100988234 100988234 C T ASCC3 Silent p.V1860V 0.31 TCGA-MF-A522-01 6 101100651 101100651 C T ASCC3 Missense_Mutation p.D980N 0.19 tolerated(0.06) probably_damaging(0.914) TCGA-MF-A522-01 6 10556652 10556652 G C GCNT2 Intron 0.10 TCGA-MF-A522-01 6 10764557 10764557 C T MAK 3'UTR 0.27 TCGA-MF-A522-01 6 112389566 112389566 C G WISP3 Missense_Mutation p.Q268E 0.31 deleterious(0) possibly_damaging(0.453) TCGA-MF-A522-01 6 112671556 112671556 G A RFPL4B Missense_Mutation p.E216K 0.22 deleterious(0.05) probably_damaging(0.982) TCGA-MF-A522-01 6 118228858 118228858 C G SLC35F1 5'UTR 0.37 TCGA-MF-A522-01 6 118228983 118228983 G A SLC35F1 Missense_Mutation p.E32K 0.34 tolerated(0.2) benign(0.017) TCGA-MF-A522-01 6 130761847 130761847 G A TMEM200A Missense_Mutation p.E94K 0.11 tolerated(0.8) benign(0.033) TCGA-MF-A522-01 6 132892111 132892111 T C TAAR6 Silent p.Y217Y 0.28 TCGA-MF-A522-01 6 133014249 133014249 G C VNN1 Missense_Mutation p.A247G 0.27 deleterious(0.01) possibly_damaging(0.84) TCGA-MF-A522-01 6 133047862 133047862 T C VNN3 Intron 0.25 TCGA-MF-A522-01 6 133092229 133092229 C G SLC18B1 Missense_Mutation p.E400D 0.28 tolerated(0.37) benign(0.014) TCGA-MF-A522-01 6 137540413 137540413 C T IFNGR1 Missense_Mutation p.E18K 0.12 tolerated(0.67) benign(0.148) TCGA-MF-A522-01 6 144612972 144612972 A T UTRN Missense_Mutation p.K3M 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.885) TCGA-MF-A522-01 6 144835908 144835908 G T UTRN Missense_Mutation p.E1732D 0.28 deleterious(0.05) benign(0.116) TCGA-MF-A522-01 6 152772302 152772302 C T SYNE1 Silent p.L1022L 0.32 TCGA-MF-A522-01 6 158509769 158509769 A T SYNJ2 Missense_Mutation p.T1141S 0.52 deleterious_low_confidence(0.05) benign(0.008) TCGA-MF-A522-01 6 160199754 160199754 C G ACAT2 Missense_Mutation p.L363V 0.25 deleterious(0.01) benign(0.363) TCGA-MF-A522-01 6 170070759 170070759 G A WDR27 Missense_Mutation p.S121L 0.26 deleterious(0) benign(0.11) TCGA-MF-A522-01 6 170166750 170166750 C A ERMARD Missense_Mutation p.T326N 0.33 deleterious(0) probably_damaging(0.999) TCGA-MF-A522-01 6 26056249 26056249 C G HIST1H1C Missense_Mutation p.K136N 0.29 deleterious(0.01) unknown(0) TCGA-MF-A522-01 6 26205238 26205238 C T HIST1H4E 3'UTR 0.30 TCGA-MF-A522-01 6 26217627 26217627 C G HIST1H2AE 3'UTR 0.15 TCGA-MF-A522-01 6 26250678 26250678 G A HIST1H3F Silent p.I52I 0.09 TCGA-MF-A522-01 6 28121419 28121419 G A ZKSCAN8 Missense_Mutation p.R454K 0.31 deleterious(0.01) probably_damaging(0.986) TCGA-MF-A522-01 6 28541474 28541474 G A SCAND3 Missense_Mutation p.A731V 0.21 deleterious_low_confidence(0.04) benign(0.001) TCGA-MF-A522-01 6 29394660 29394660 A G OR11A1 Silent p.Y253Y 0.28 TCGA-MF-A522-01 6 29455441 29455441 G C MAS1L Missense_Mutation p.P80R 0.17 tolerated(0.35) benign(0.008) TCGA-MF-A522-01 6 3010278 3010278 C T NQO2 Silent p.V9V 0.18 TCGA-MF-A522-01 6 31691618 31691618 C T C6orf25 Silent p.D88D 0.12 TCGA-MF-A522-01 6 31924484 31924484 C G NELFE Missense_Mutation p.E93Q 0.12 deleterious(0) probably_damaging(0.971) TCGA-MF-A522-01 6 33657032 33657032 C G ITPR3 Missense_Mutation p.L2238V 0.25 tolerated(0.37) benign(0.216) TCGA-MF-A522-01 6 35436210 35436210 C T RPL10A 5'UTR 0.19 TCGA-MF-A522-01 6 36343761 36343761 C T ETV7 Nonsense_Mutation p.W65* 0.23 TCGA-MF-A522-01 6 38834635 38834635 G C DNAH8 Missense_Mutation p.E2009Q 0.29 probably_damaging(1) TCGA-MF-A522-01 6 40400788 40400788 G A LRFN2 Missense_Mutation p.P22L 0.53 deleterious(0) probably_damaging(1) TCGA-MF-A522-01 6 49585832 49585832 T C RHAG Silent p.L147L 0.12 TCGA-MF-A522-01 6 51947211 51947211 G T PKHD1 Missense_Mutation p.P87H 0.25 deleterious(0.04) probably_damaging(0.962) TCGA-MF-A522-01 6 52996824 52996824 C T GCM1 Missense_Mutation p.G141E 0.30 deleterious(0) probably_damaging(0.978) TCGA-MF-A522-01 6 6318821 6318821 T C F13A1 Missense_Mutation p.D26G 0.04 deleterious(0.02) benign(0.183) TCGA-MF-A522-01 6 63995620 63995620 G A LGSN Nonsense_Mutation p.Q68* 0.28 TCGA-MF-A522-01 6 72960120 72960120 C - RIMS1 Frame_Shift_Del p.P777Lfs*6 0.37 TCGA-MF-A522-01 6 74191883 74191883 G A MTO1 Missense_Mutation p.E501K 0.26 deleterious(0) probably_damaging(0.999) TCGA-MF-A522-01 6 90312786 90312786 G A ANKRD6 Silent p.G86G 0.26 TCGA-MF-A522-01 7 100033518 100033518 C G PPP1R35 Missense_Mutation p.R135T 0.06 deleterious(0.02) possibly_damaging(0.677) TCGA-MF-A522-01 7 100075320 100075320 C A TSC22D4 Silent p.G114G 0.15 TCGA-MF-A522-01 7 100184172 100184172 C G FBXO24 5'Flank 0.08 TCGA-MF-A522-01 7 100284283 100284283 G A GIGYF1 Missense_Mutation p.S228F 0.03 tolerated(0.73) unknown(0) TCGA-MF-A522-01 7 100678441 100678441 A T MUC17 Silent p.T1248T 0.09 TCGA-MF-A522-01 7 104747922 104747922 G A KMT2E Silent p.R1006R 0.13 TCGA-MF-A522-01 7 106545825 106545825 C T PIK3CG Missense_Mutation p.S1101L 0.16 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-MF-A522-01 7 107572658 107572658 G C LAMB1 Silent p.V1451V 0.11 TCGA-MF-A522-01 7 112724641 112724641 C A GPR85 Missense_Mutation p.V46L 0.82 tolerated(1) benign(0.006) TCGA-MF-A522-01 7 117292934 117292934 G T CFTR Missense_Mutation p.L1304F 0.78 deleterious(0) probably_damaging(0.933) TCGA-MF-A522-01 7 117417772 117417772 G A CTTNBP2 Silent p.D857D 0.50 TCGA-MF-A522-01 7 129767252 129767252 G T KLHDC10 Missense_Mutation p.A314S 0.87 tolerated(0.19) benign(0.057) TCGA-MF-A522-01 7 133160202 133160202 C G EXOC4 Missense_Mutation p.Q435E 0.35 tolerated(0.78) benign(0.101) TCGA-MF-A522-01 7 135330254 135330254 C G NUP205 Missense_Mutation p.L1908V 0.25 deleterious(0) probably_damaging(0.979) TCGA-MF-A522-01 7 138522829 138522829 G T KIAA1549 Nonsense_Mutation p.S1892* 0.08 TCGA-MF-A522-01 7 138552829 138552829 G C KIAA1549 Silent p.V1607V 0.11 TCGA-MF-A522-01 7 138583719 138583719 G A KIAA1549 Nonsense_Mutation p.Q1277* 0.11 TCGA-MF-A522-01 7 138591846 138591846 G T KIAA1549 Silent p.I1093I 0.11 TCGA-MF-A522-01 7 138602786 138602786 G A KIAA1549 Missense_Mutation p.S529F 0.12 deleterious(0.03) possibly_damaging(0.794) TCGA-MF-A522-01 7 138603260 138603260 G A KIAA1549 Missense_Mutation p.S371F 0.14 tolerated(0.73) possibly_damaging(0.59) TCGA-MF-A522-01 7 150738212 150738212 G C ABCB8 Missense_Mutation p.E504Q 0.25 deleterious(0) probably_damaging(0.94) TCGA-MF-A522-01 7 156756616 156756616 A G NOM1 Silent p.L643L 0.86 TCGA-MF-A522-01 7 19184666 19184666 T C FERD3L Missense_Mutation p.N107S 0.61 deleterious(0) probably_damaging(1) TCGA-MF-A522-01 7 20825352 20825352 G A SP8 Silent p.G28G 0.23 TCGA-MF-A522-01 7 23191759 23191759 G C KLHL7 Missense_Mutation p.K289N 0.23 deleterious(0) benign(0.276) TCGA-MF-A522-01 7 23240401 23240401 A C NUPL2 3'UTR 0.06 TCGA-MF-A522-01 7 2617981 2617981 C T IQCE Missense_Mutation p.P191S 0.17 deleterious(0.02) possibly_damaging(0.607) TCGA-MF-A522-01 7 27140423 27140423 G C HOXA2 Silent p.P351P 0.24 TCGA-MF-A522-01 7 2962940 2962940 C G CARD11 Silent p.V656V 0.63 TCGA-MF-A522-01 7 33035958 33035958 C G FKBP9 Missense_Mutation p.S408C 0.11 deleterious(0) probably_damaging(0.981) TCGA-MF-A522-01 7 38357067 38357067 C A TRGV9 Silent p.T9T 0.58 TCGA-MF-A522-01 7 38389261 38389261 G A TRGV5 Nonsense_Mutation p.Q17* 0.33 TCGA-MF-A522-01 7 38389474 38389474 C T TRGV5 5'UTR 0.07 TCGA-MF-A522-01 7 4218166 4218166 C G SDK1 Missense_Mutation p.I1682M 0.10 deleterious(0.02) possibly_damaging(0.537) TCGA-MF-A522-01 7 43846592 43846592 G A BLVRA Missense_Mutation p.E217K 0.23 deleterious(0.01) probably_damaging(1) TCGA-MF-A522-01 7 43846745 43846745 G C BLVRA Missense_Mutation p.E268Q 0.21 tolerated(0.27) benign(0.017) TCGA-MF-A522-01 7 44836390 44836390 G C PPIA Missense_Mutation p.E23Q 0.21 deleterious_low_confidence(0.04) benign(0.099) TCGA-MF-A522-01 7 47333374 47333374 C T TNS3 Silent p.P1243P 0.35 TCGA-MF-A522-01 7 4917419 4917419 G T RADIL Missense_Mutation p.Q118K 0.67 tolerated(0.35) benign(0.042) TCGA-MF-A522-01 7 55863458 55863458 G T SEPT14 3'UTR 0.47 TCGA-MF-A522-01 7 56128188 56128188 C T CCT6A Intron 0.10 TCGA-MF-A522-01 7 56149866 56149866 C G PHKG1 Missense_Mutation p.E242Q 0.12 tolerated(0.06) benign(0.12) TCGA-MF-A522-01 7 73461048 73461048 G A ELN Silent p.P198P 0.32 TCGA-MF-A522-01 7 7476057 7476057 C T COL28A1 Missense_Mutation p.G610E 0.09 deleterious(0) probably_damaging(0.999) TCGA-MF-A522-01 7 76143337 76143337 C G UPK3B Missense_Mutation p.L234V 0.26 tolerated_low_confidence(0.21) benign(0.012) TCGA-MF-A522-01 7 7679982 7679982 T A RPA3 Missense_Mutation p.K23M 0.21 deleterious(0) possibly_damaging(0.609) TCGA-MF-A522-01 7 8062197 8062197 G C GLCCI1 Missense_Mutation p.E232Q 0.06 deleterious(0.01) benign(0.255) TCGA-MF-A522-01 7 8110573 8110573 G A GLCCI1 Missense_Mutation p.R330Q 0.09 deleterious(0.02) probably_damaging(0.962) TCGA-MF-A522-01 7 81388107 81388107 C T HGF Missense_Mutation p.D90N 0.14 tolerated(0.13) benign(0.063) TCGA-MF-A522-01 7 87772348 87772348 C T ADAM22 Missense_Mutation p.L410F 0.23 tolerated(0.06) possibly_damaging(0.741) TCGA-MF-A522-01 7 89856779 89856779 G C STEAP2 Missense_Mutation p.E329D 0.09 tolerated(0.51) benign(0.066) TCGA-MF-A522-01 7 92134205 92134205 C G PEX1 Missense_Mutation p.E638Q 0.12 deleterious(0.01) benign(0.094) TCGA-MF-A522-01 7 98547165 98547165 C T TRRAP Silent p.T1631T 0.22 TCGA-MF-A522-01 7 99008777 99008777 C G BUD31 Missense_Mutation p.T21R 0.12 deleterious(0.03) probably_damaging(0.958) TCGA-MF-A522-01 7 99753448 99753448 C T C7orf43 Missense_Mutation p.G414E 0.11 deleterious(0.04) probably_damaging(0.988) TCGA-MF-A522-01 8 100443879 100443879 A G VPS13B Missense_Mutation p.H1066R 0.14 tolerated(1) benign(0.001) TCGA-MF-A522-01 8 101300059 101300059 G T RNF19A Missense_Mutation p.S115Y 0.15 deleterious(0.01) benign(0.074) TCGA-MF-A522-01 8 104455064 104455064 C A DCAF13 Missense_Mutation p.P583Q 0.63 tolerated(0.06) benign(0.331) TCGA-MF-A522-01 8 107781969 107781969 G A ABRA Silent p.I150I 0.11 TCGA-MF-A522-01 8 110413816 110413816 G A PKHD1L1 Missense_Mutation p.E458K 0.32 tolerated(0.51) probably_damaging(0.912) TCGA-MF-A522-01 8 113304921 113304921 G T CSMD3 Missense_Mutation p.P2878H 0.15 deleterious(0) probably_damaging(0.997) TCGA-MF-A522-01 8 120847011 120847011 A T DSCC1 3'UTR 0.37 TCGA-MF-A522-01 8 120886125 120886125 C T DEPTOR Silent p.D13D 0.14 TCGA-MF-A522-01 8 122629389 122629389 A C HAS2 Missense_Mutation p.L229V 0.28 deleterious(0.04) possibly_damaging(0.868) TCGA-MF-A522-01 8 13356862 13356862 G T DLC1 Missense_Mutation p.P240H 0.75 deleterious_low_confidence(0.02) benign(0.002) TCGA-MF-A522-01 8 139160772 139160772 C A FAM135B Missense_Mutation p.G1147C 0.46 deleterious(0) probably_damaging(1) TCGA-MF-A522-01 8 139380193 139380193 C A FAM135B Missense_Mutation p.V12L 0.47 tolerated(0.06) benign(0.026) TCGA-MF-A522-01 8 145584555 145584555 G A SLC52A2 Silent p.L406L 0.19 TCGA-MF-A522-01 8 17500408 17500408 C G PDGFRL 3'UTR 0.76 TCGA-MF-A522-01 8 22463618 22463618 C T CCAR2 Silent p.L27L 0.19 TCGA-MF-A522-01 8 26366378 26366378 G A PNMA2 5'UTR 0.30 TCGA-MF-A522-01 8 28928159 28928159 G C KIF13B Silent p.L1781L 0.19 TCGA-MF-A522-01 8 48715906 48715906 C G PRKDC Missense_Mutation p.E3294Q 0.18 benign(0.152) TCGA-MF-A522-01 8 51664606 51664606 G A SNTG1 Missense_Mutation p.D444N 0.60 deleterious(0) possibly_damaging(0.821) TCGA-MF-A522-01 8 56436792 56436792 A G XKR4 3'UTR 0.67 TCGA-MF-A522-01 8 67793156 67793156 C T MCMDC2 Missense_Mutation p.S261L 0.09 tolerated(0.57) benign(0.004) TCGA-MF-A522-01 8 70536220 70536220 G T SULF1 Missense_Mutation p.L546F 0.62 deleterious(0.01) probably_damaging(0.924) TCGA-MF-A522-01 8 77618377 77618377 G T ZFHX4 Missense_Mutation p.R685M 0.14 possibly_damaging(0.702) TCGA-MF-A522-01 8 97274173 97274173 C T PTDSS1 5'UTR 0.13 TCGA-MF-A522-01 9 103015416 103015416 G C INVS Missense_Mutation p.E488Q 0.19 deleterious(0.05) possibly_damaging(0.596) TCGA-MF-A522-01 9 112200412 112200412 G C PTPN3 Missense_Mutation p.S190C 0.35 deleterious(0.02) possibly_damaging(0.759) TCGA-MF-A522-01 9 114371439 114371439 C T LRRC37A5P RNA 0.30 TCGA-MF-A522-01 9 117002497 117002497 C T COL27A1 Intron 0.24 TCGA-MF-A522-01 9 123605207 123605207 G C PSMD5 5'UTR 0.80 TCGA-MF-A522-01 9 126776303 126776303 G A LHX2 Missense_Mutation p.D62N 0.30 tolerated(0.07) benign(0.005) TCGA-MF-A522-01 9 126776367 126776367 G A LHX2 Missense_Mutation p.C83Y 0.32 deleterious(0.02) benign(0.007) TCGA-MF-A522-01 9 127781135 127781135 C T SCAI Missense_Mutation p.M291I 0.21 tolerated(0.19) benign(0.048) TCGA-MF-A522-01 9 137726835 137726835 G A COL5A1 Missense_Mutation p.E1719K 0.28 unknown(0) TCGA-MF-A522-01 9 139873447 139873447 C G PTGDS Missense_Mutation p.F39L 0.20 tolerated(0.42) benign(0.204) TCGA-MF-A522-01 9 18574099 18574099 C G ADAMTSL1 Silent p.G103G 0.77 TCGA-MF-A522-01 9 18675873 18675873 C A ADAMTSL1 Silent p.I368I 0.77 TCGA-MF-A522-01 9 21368014 21368014 A G IFNA13 5'UTR 0.40 TCGA-MF-A522-01 9 21971026 21971026 C - CDKN2A Frame_Shift_Del p.G111Afs*35 0.48 TCGA-MF-A522-01 9 27009157 27009157 G C IFT74 Splice_Site p.X242_splice 0.70 TCGA-MF-A522-01 9 32543384 32543384 G A TOPORS Missense_Mutation p.S380L 0.32 tolerated(0.05) benign(0.414) TCGA-MF-A522-01 9 35075529 35075529 G A FANCG Missense_Mutation p.H456Y 0.81 tolerated(1) benign(0.01) TCGA-MF-A522-01 9 4718523 4718523 C T AK3 Silent p.L153L 0.15 TCGA-MF-A522-01 9 71842902 71842902 G C TJP2 Missense_Mutation p.R473T 0.29 deleterious(0.01) possibly_damaging(0.71) TCGA-MF-A522-01 9 77386647 77386647 C T TRPM6 Missense_Mutation p.E1170K 0.29 tolerated(0.1) benign(0.354) TCGA-MF-A522-01 9 79323433 79323433 G T PRUNE2 Missense_Mutation p.P1253T 0.81 tolerated(0.16) benign(0.011) TCGA-MF-A522-01 9 84199425 84199425 T C TLE1 Missense_Mutation p.S715G 0.74 deleterious(0.01) probably_damaging(0.931) TCGA-MF-A522-01 9 84604734 84604734 C T SPATA31D1 Silent p.F76F 0.16 TCGA-MF-A522-01 9 84609625 84609625 G T SPATA31D1 Nonsense_Mutation p.E1414* 0.31 TCGA-MF-A522-01 9 88842801 88842801 C T C9orf153 Missense_Mutation p.D71N 0.30 tolerated(0.14) benign(0.412) TCGA-MF-A522-01 9 90315065 90315065 G A DAPK1 Silent p.L928L 0.14 TCGA-MF-A522-01 9 93976646 93976646 C T AUH Missense_Mutation p.R335H 0.14 tolerated(0.25) benign(0.001) TCGA-MF-A522-01 9 95064022 95064022 C T NOL8 Missense_Mutation p.D996N 0.09 deleterious(0.04) benign(0.417) TCGA-MF-A522-01 X 101153101 101153101 C T ZMAT1 Silent p.E107E 0.83 TCGA-MF-A522-01 X 104464315 104464315 G A TEX13A Missense_Mutation p.A188V 0.84 tolerated(0.27) benign(0.058) TCGA-MF-A522-01 X 109931984 109931984 G T CHRDL1 Missense_Mutation p.P276T 0.78 deleterious(0) probably_damaging(1) TCGA-MF-A522-01 X 11316833 11316833 C G AMELX Missense_Mutation p.P118A 0.50 deleterious(0.01) unknown(0) TCGA-MF-A522-01 X 119054534 119054534 C T AKAP14 Silent p.F186F 0.23 TCGA-MF-A522-01 X 133527592 133527592 G A PHF6 Missense_Mutation p.R101K 0.22 tolerated(0.71) benign(0.004) TCGA-MF-A522-01 X 14930375 14930375 A T MOSPD2 Missense_Mutation p.N295I 0.84 deleterious(0.02) benign(0.081) TCGA-MF-A522-01 X 152981017 152981017 G A BCAP31 Silent p.G174G 0.86 TCGA-MF-A522-01 X 154090017 154090017 C T F8 Silent p.G2233G 0.58 TCGA-MF-A522-01 X 1553952 1553952 C T ASMTL Silent p.V121V 0.16 TCGA-MF-A522-01 X 20148684 20148684 C T EIF1AX Missense_Mutation p.D127N 0.25 tolerated(0.05) unknown(0) TCGA-MF-A522-01 X 73641817 73641817 C T SLC16A2 Silent p.F115F 0.35 TCGA-MF-A522-01 X 74517418 74517418 C T UPRT Intron 0.26 TCGA-MF-A522-01 X 78011089 78011089 G A LPAR4 Silent p.G241G 0.82 TCGA-MF-A522-01 X 79278732 79278732 G A TBX22 Missense_Mutation p.A117T 0.82 deleterious(0) probably_damaging(0.998) TCGA-MF-A522-01 X 91132903 91132903 C T PCDH11X Missense_Mutation p.T555I 0.46 deleterious(0.02) possibly_damaging(0.799) TCGA-MF-A522-01 X 92964870 92964870 C A FAM133A Nonsense_Mutation p.S151* 0.87 TCGA-NC-A5HD-01 10 102738274 102738274 C T MRPL43 3'Flank 0.59 TCGA-NC-A5HD-01 10 103281599 103281599 G T BTRC Missense_Mutation p.L176F 0.32 deleterious(0.04) benign(0.263) TCGA-NC-A5HD-01 10 115515040 115515040 G T PLEKHS1 Nonsense_Mutation p.E2* 0.59 TCGA-NC-A5HD-01 10 117221542 117221542 A G ATRNL1 Silent p.E1138E 0.69 TCGA-NC-A5HD-01 10 131969846 131969846 A G GLRX3 Splice_Site p.X258_splice 0.53 TCGA-NC-A5HD-01 10 134940836 134940836 G T GPR123 Splice_Site p.X167_splice 0.73 TCGA-NC-A5HD-01 10 135000147 135000147 C G KNDC1 Missense_Mutation p.A432G 0.59 tolerated(0.47) benign(0) TCGA-NC-A5HD-01 10 16967596 16967596 C A CUBN Missense_Mutation p.G2150V 0.56 deleterious(0) probably_damaging(1) TCGA-NC-A5HD-01 10 17363013 17363013 G T ST8SIA6 Missense_Mutation p.P354H 0.58 tolerated(0.14) probably_damaging(0.957) TCGA-NC-A5HD-01 10 18689903 18689903 G T CACNB2 Intron 0.53 TCGA-NC-A5HD-01 10 25464380 25464380 T C GPR158 Missense_Mutation p.C11R 0.63 tolerated_low_confidence(0.1) unknown(0) TCGA-NC-A5HD-01 10 26513545 26513545 G C GAD2 Missense_Mutation p.W230S 0.63 deleterious(0.01) probably_damaging(1) TCGA-NC-A5HD-01 10 26513546 26513546 G A GAD2 Nonsense_Mutation p.W230* 0.64 TCGA-NC-A5HD-01 10 38246377 38246377 A T ZNF25 Missense_Mutation p.L38Q 0.53 tolerated(0.06) benign(0.026) TCGA-NC-A5HD-01 10 43016043 43016043 C A ZNF37BP RNA 0.62 TCGA-NC-A5HD-01 10 45473144 45473144 G A C10orf10 Missense_Mutation p.S112F 0.36 deleterious(0.02) benign(0) TCGA-NC-A5HD-01 10 55581520 55581520 G A PCDH15 3'UTR 0.54 TCGA-NC-A5HD-01 10 55626544 55626544 T A PCDH15 Missense_Mutation p.K1192I 0.64 deleterious(0) probably_damaging(0.992) TCGA-NC-A5HD-01 10 64159551 64159551 G T ZNF365 Intron 0.52 TCGA-NC-A5HD-01 10 76818096 76818096 C T DUPD1 Nonsense_Mutation p.W59* 0.54 TCGA-NC-A5HD-01 10 78870077 78870077 C T KCNMA1 Missense_Mutation p.E329K 0.61 tolerated(0.85) benign(0.06) TCGA-NC-A5HD-01 10 89624287 89624287 T - PTEN Frame_Shift_Del p.F21Sfs*3 0.39 TCGA-NC-A5HD-01 10 95557638 95557638 C A LGI1 3'UTR 0.62 TCGA-NC-A5HD-01 10 97096334 97096334 G A SORBS1 Missense_Mutation p.R1195W 0.63 deleterious_low_confidence(0.04) benign(0.28) TCGA-NC-A5HD-01 11 104877975 104877975 G A CASP5 Missense_Mutation p.H103Y 0.17 deleterious(0) possibly_damaging(0.457) TCGA-NC-A5HD-01 11 106579380 106579380 T C GUCY1A2 Missense_Mutation p.I648V 0.20 tolerated(0.1) benign(0.395) TCGA-NC-A5HD-01 11 114453693 114453693 G T NXPE4 Silent p.S49S 0.40 TCGA-NC-A5HD-01 11 114453694 114453694 G T NXPE4 Missense_Mutation p.S49Y 0.40 tolerated(1) benign(0.025) TCGA-NC-A5HD-01 11 117258004 117258004 G C CEP164 Missense_Mutation p.E604Q 0.34 deleterious(0.03) probably_damaging(0.925) TCGA-NC-A5HD-01 11 121476171 121476171 A T SORL1 Silent p.V1613V 0.38 TCGA-NC-A5HD-01 11 122850044 122850044 C T BSX Silent p.R128R 0.33 TCGA-NC-A5HD-01 11 123811123 123811123 T A OR4D5 Missense_Mutation p.M267K 0.12 tolerated(0.05) probably_damaging(0.979) TCGA-NC-A5HD-01 11 13427282 13427282 T C BTBD10 Missense_Mutation p.I310M 0.55 tolerated(0.06) probably_damaging(0.915) TCGA-NC-A5HD-01 11 16872814 16872814 C G PLEKHA7 Missense_Mutation p.G207A 0.63 deleterious(0) probably_damaging(1) TCGA-NC-A5HD-01 11 18434337 18434337 A G LDHC Missense_Mutation p.I25V 0.57 tolerated(1) benign(0.024) TCGA-NC-A5HD-01 11 22271827 22271827 G T ANO5 Missense_Mutation p.G308V 0.52 deleterious(0) probably_damaging(0.981) TCGA-NC-A5HD-01 11 30953446 30953446 C T DCDC1 Silent p.K923K 0.61 TCGA-NC-A5HD-01 11 47774561 47774561 C T FNBP4 Missense_Mutation p.A182T 0.61 tolerated(0.31) benign(0.004) TCGA-NC-A5HD-01 11 49974603 49974603 T C OR4C13 Missense_Mutation p.L210P 0.25 deleterious_low_confidence(0.01) benign(0.337) TCGA-NC-A5HD-01 11 55065503 55065503 G T TRIM51HP RNA 0.22 TCGA-NC-A5HD-01 11 55111571 55111571 C A OR4A16 Missense_Mutation p.L299I 0.24 tolerated_low_confidence(0.09) benign(0.033) TCGA-NC-A5HD-01 11 55136113 55136113 T - OR4A15 Frame_Shift_Del p.S252Lfs*48 0.14 TCGA-NC-A5HD-01 11 55340052 55340052 C A OR4C16 Missense_Mutation p.S150Y 0.22 deleterious(0) probably_damaging(0.988) TCGA-NC-A5HD-01 11 55433038 55433038 C T OR4C6 Silent p.I132I 0.21 TCGA-NC-A5HD-01 11 55433246 55433246 G T OR4C6 Missense_Mutation p.G202W 0.38 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-NC-A5HD-01 11 55587569 55587569 C A OR5D18 Nonsense_Mutation p.S155* 0.22 TCGA-NC-A5HD-01 11 55861211 55861211 G T OR8I2 Missense_Mutation p.W143L 0.47 tolerated(0.8) benign(0.379) TCGA-NC-A5HD-01 11 55872678 55872678 C T OR8H2 Missense_Mutation p.L54F 0.13 tolerated(0.71) possibly_damaging(0.463) TCGA-NC-A5HD-01 11 56000488 56000488 G T OR5T2 Missense_Mutation p.D58E 0.29 tolerated(0.1) benign(0.033) TCGA-NC-A5HD-01 11 56237334 56237334 T C OR5M3 Missense_Mutation p.I214V 0.19 tolerated(0.53) benign(0.011) TCGA-NC-A5HD-01 11 57886439 57886439 T A OR9I1 Missense_Mutation p.T160S 0.44 deleterious(0.01) possibly_damaging(0.573) TCGA-NC-A5HD-01 11 59940493 59940493 A T MS4A6A Missense_Mutation p.V248E 0.34 deleterious(0.02) possibly_damaging(0.743) TCGA-NC-A5HD-01 11 60718882 60718882 C A SLC15A3 Missense_Mutation p.A48S 0.29 tolerated(0.06) benign(0.311) TCGA-NC-A5HD-01 11 62752106 62752106 G A SLC22A6 Silent p.I19I 0.22 TCGA-NC-A5HD-01 11 6292049 6292049 G T CCKBR Intron 0.57 TCGA-NC-A5HD-01 11 6413234 6413234 A T SMPD1 Silent p.P313P 0.62 TCGA-NC-A5HD-01 11 6452689 6452689 A G HPX Missense_Mutation p.W381R 0.52 tolerated(0.36) possibly_damaging(0.463) TCGA-NC-A5HD-01 11 65637674 65637674 G C EFEMP2 Missense_Mutation p.H175Q 0.25 tolerated(0.99) benign(0.175) TCGA-NC-A5HD-01 11 66010495 66010495 G A PACS1 Missense_Mutation p.M923I 0.40 tolerated(0.26) benign(0.034) TCGA-NC-A5HD-01 11 66249800 66249800 C T DPP3 Silent p.Y43Y 0.49 TCGA-NC-A5HD-01 11 66326737 66326737 A G CTSF 3'Flank 0.20 TCGA-NC-A5HD-01 11 70267581 70267581 A T CTTN Intron 0.25 TCGA-NC-A5HD-01 11 77394832 77394832 C T RSF1 Silent p.K996K 0.27 TCGA-NC-A5HD-01 11 88911692 88911692 G T TYR Nonsense_Mutation p.G191* 0.48 TCGA-NC-A5HD-01 11 89768688 89768688 C G TRIM49C Missense_Mutation p.F103L 0.47 deleterious(0.02) probably_damaging(0.923) TCGA-NC-A5HD-01 11 903113 903113 T A CHID1 Splice_Site p.X63_splice 0.67 TCGA-NC-A5HD-01 11 94599154 94599154 A T AMOTL1 Missense_Mutation p.K770M 0.45 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HD-01 12 104160138 104160138 C A STAB2 3'UTR 0.24 TCGA-NC-A5HD-01 12 109616891 109616891 A G ACACB Splice_Site p.X480_splice 0.54 TCGA-NC-A5HD-01 12 110906067 110906067 T A GPN3 Intron 0.32 TCGA-NC-A5HD-01 12 111758090 111758090 C G CUX2 Silent p.L759L 0.37 TCGA-NC-A5HD-01 12 112665964 112665964 T A HECTD4 Silent p.S2115S 0.23 TCGA-NC-A5HD-01 12 113603735 113603735 C A DDX54 Missense_Mutation p.R506L 0.12 tolerated(0.29) benign(0.028) TCGA-NC-A5HD-01 12 120750446 120750446 C G SIRT4 Missense_Mutation p.P229A 0.24 deleterious(0) probably_damaging(0.994) TCGA-NC-A5HD-01 12 120947842 120947842 C A COQ5 Missense_Mutation p.R220L 0.26 deleterious(0) probably_damaging(1) TCGA-NC-A5HD-01 12 131488798 131488798 G T GPR133 Silent p.G404G 0.38 TCGA-NC-A5HD-01 12 14019127 14019127 C A GRIN2B Nonsense_Mutation p.E6* 0.44 TCGA-NC-A5HD-01 12 18234111 18234111 G T RERGL 3'UTR 0.18 TCGA-NC-A5HD-01 12 18234112 18234112 G T RERGL 3'UTR 0.17 TCGA-NC-A5HD-01 12 18691087 18691087 C T PIK3C2G Intron 0.18 TCGA-NC-A5HD-01 12 20709642 20709642 C A PDE3A Missense_Mutation p.Q337K 0.23 deleterious(0.02) benign(0.023) TCGA-NC-A5HD-01 12 25702377 25702377 T C IFLTD1 Missense_Mutation p.M65V 0.46 tolerated(0.58) benign(0.002) TCGA-NC-A5HD-01 12 32735306 32735306 G C FGD4 Missense_Mutation p.E169Q 0.41 tolerated(0.21) benign(0.04) TCGA-NC-A5HD-01 12 40001511 40001511 C G ABCD2 Missense_Mutation p.G376R 0.36 tolerated(0.25) benign(0.002) TCGA-NC-A5HD-01 12 40677840 40677840 G T LRRK2 Missense_Mutation p.S802I 0.49 deleterious(0.01) probably_damaging(0.998) TCGA-NC-A5HD-01 12 4554547 4554547 C A FGF6 Missense_Mutation p.G64W 0.23 tolerated(0.14) probably_damaging(0.984) TCGA-NC-A5HD-01 12 46318788 46318788 G A SCAF11 Missense_Mutation p.P1210L 0.32 deleterious(0.02) possibly_damaging(0.656) TCGA-NC-A5HD-01 12 49425728 49425728 G - KMT2D Frame_Shift_Del p.Q4254Rfs*24 0.25 TCGA-NC-A5HD-01 12 51883502 51883502 C A SLC4A8 Missense_Mutation p.L823M 0.40 deleterious(0) probably_damaging(1) TCGA-NC-A5HD-01 12 55820475 55820475 G A OR6C76 Nonsense_Mutation p.W146* 0.37 TCGA-NC-A5HD-01 12 56297231 56297231 C A WIBG Missense_Mutation p.G24V 0.38 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HD-01 12 56748296 56748296 A C STAT2 Missense_Mutation p.C246G 0.30 deleterious(0) probably_damaging(1) TCGA-NC-A5HD-01 12 63954288 63954288 C G DPY19L2 3'UTR 0.42 TCGA-NC-A5HD-01 12 64519771 64519771 G A SRGAP1 Missense_Mutation p.E747K 0.30 deleterious(0) probably_damaging(0.928) TCGA-NC-A5HD-01 12 6946216 6946216 G C LEPREL2 Missense_Mutation p.R508P 0.34 deleterious(0.02) possibly_damaging(0.894) TCGA-NC-A5HD-01 12 72372777 72372777 C A TPH2 Missense_Mutation p.P284Q 0.15 deleterious(0) probably_damaging(0.992) TCGA-NC-A5HD-01 12 75444720 75444720 G A KCNC2 Silent p.I355I 0.16 TCGA-NC-A5HD-01 12 78400284 78400284 C G NAV3 Silent p.A322A 0.20 TCGA-NC-A5HD-01 12 80730321 80730321 T A OTOGL Missense_Mutation p.C1568S 0.44 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HD-01 12 83251096 83251096 G T TMTC2 Nonsense_Mutation p.E131* 0.47 TCGA-NC-A5HD-01 12 8388250 8388250 G C RP11-266K4.9 RNA 0.14 TCGA-NC-A5HD-01 12 96359502 96359502 G A AMDHD1 Missense_Mutation p.G326E 0.37 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HD-01 12 96728553 96728553 G T CDK17 Nonsense_Mutation p.S21* 0.41 TCGA-NC-A5HD-01 12 98927324 98927324 C T TMPO Missense_Mutation p.P430L 0.10 deleterious_low_confidence(0) benign(0.1) TCGA-NC-A5HD-01 13 107145607 107145607 C A EFNB2 Silent p.P261P 0.57 TCGA-NC-A5HD-01 13 107145608 107145608 G C EFNB2 Missense_Mutation p.P261R 0.57 tolerated(0.15) possibly_damaging(0.885) TCGA-NC-A5HD-01 13 111114684 111114684 C T COL4A2 Missense_Mutation p.P577S 0.32 possibly_damaging(0.661) TCGA-NC-A5HD-01 13 113744205 113744205 A T MCF2L Intron 0.58 TCGA-NC-A5HD-01 13 45857764 45857764 G A GTF2F2 3'UTR 0.30 TCGA-NC-A5HD-01 13 67802494 67802494 T A PCDH9 Missense_Mutation p.I27F 0.59 tolerated(0.72) possibly_damaging(0.803) TCGA-NC-A5HD-01 13 95112476 95112476 C G DCT Missense_Mutation p.A350P 0.59 deleterious(0) probably_damaging(0.962) TCGA-NC-A5HD-01 14 102027896 102027896 G T DIO3 Silent p.S21S 0.40 TCGA-NC-A5HD-01 14 106621893 106621893 T A IGHV3-16 3'Flank 0.41 TCGA-NC-A5HD-01 14 106994052 106994052 C G IGHV3-48 Missense_Mutation p.R38T 0.26 deleterious_low_confidence(0.01) benign(0.213) TCGA-NC-A5HD-01 14 20444023 20444023 A C OR4K15 Missense_Mutation p.I116L 0.64 deleterious(0) possibly_damaging(0.502) TCGA-NC-A5HD-01 14 21238475 21238475 G A EDDM3B Missense_Mutation p.E56K 0.59 tolerated(0.17) probably_damaging(0.989) TCGA-NC-A5HD-01 14 25101654 25101654 A G GZMB Missense_Mutation p.V72A 0.58 deleterious(0.01) probably_damaging(0.921) TCGA-NC-A5HD-01 14 31554059 31554059 G T AP4S1 Nonsense_Mutation p.G151* 0.57 TCGA-NC-A5HD-01 14 32563151 32563151 G - ARHGAP5 Frame_Shift_Del p.E1093Nfs*34 0.40 TCGA-NC-A5HD-01 14 50704416 50704416 C T L2HGDH Nonsense_Mutation p.W408* 0.78 TCGA-NC-A5HD-01 14 57272143 57272143 G T OTX2 Missense_Mutation p.A11E 0.67 deleterious(0.01) benign(0.112) TCGA-NC-A5HD-01 14 60212822 60212822 G A RTN1 Missense_Mutation p.H207Y 0.64 tolerated(1) benign(0) TCGA-NC-A5HD-01 14 64497784 64497784 A G SYNE2 Silent p.L2310L 0.71 TCGA-NC-A5HD-01 14 73718497 73718497 G A PAPLN Missense_Mutation p.E239K 0.75 deleterious(0.02) probably_damaging(0.953) TCGA-NC-A5HD-01 14 95562519 95562519 G T DICER1 Missense_Mutation p.Q1580K 0.40 deleterious(0.03) probably_damaging(0.962) TCGA-NC-A5HD-01 15 102346186 102346186 G T OR4F6 Missense_Mutation p.K88N 0.68 deleterious_low_confidence(0.05) benign(0.078) TCGA-NC-A5HD-01 15 20657655 20657655 C A HERC2P3 RNA 0.29 TCGA-NC-A5HD-01 15 22383262 22383262 G T OR4N4 Missense_Mutation p.A264S 0.26 tolerated(0.7) possibly_damaging(0.648) TCGA-NC-A5HD-01 15 25477440 25477440 A T SNORD115-33 3'Flank 0.61 TCGA-NC-A5HD-01 15 29346398 29346398 G C APBA2 Missense_Mutation p.C104S 0.62 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-NC-A5HD-01 15 50211071 50211071 T A ATP8B4 Missense_Mutation p.N667I 0.70 deleterious(0) possibly_damaging(0.772) TCGA-NC-A5HD-01 15 51974738 51974738 T G SCG3 Nonsense_Mutation p.L36* 0.61 TCGA-NC-A5HD-01 15 52689408 52689408 C G MYO5A Missense_Mutation p.D437H 0.62 deleterious(0) probably_damaging(1) TCGA-NC-A5HD-01 15 62254988 62254988 A G VPS13C Missense_Mutation p.I1132T 0.63 deleterious(0.01) benign(0.102) TCGA-NC-A5HD-01 15 65295584 65295584 A G MTFMT Missense_Mutation p.I329T 0.59 deleterious(0) benign(0.206) TCGA-NC-A5HD-01 15 65350905 65350906 - A RASL12 Frame_Shift_Ins p.V96Gfs*12 0.33 TCGA-NC-A5HD-01 15 72954653 72954653 A G GOLGA6B Missense_Mutation p.E303G 0.13 deleterious(0) possibly_damaging(0.607) TCGA-NC-A5HD-01 15 72956814 72956814 T C GOLGA6B Missense_Mutation p.L488P 0.42 tolerated(0.09) possibly_damaging(0.791) TCGA-NC-A5HD-01 15 74032310 74032310 T A C15orf59 Missense_Mutation p.Q277L 0.58 deleterious(0) probably_damaging(0.993) TCGA-NC-A5HD-01 15 77471827 77471827 T A PEAK1 Silent p.P814P 0.57 TCGA-NC-A5HD-01 15 78294009 78294009 G C TBC1D2B Missense_Mutation p.S883C 0.83 deleterious(0.02) possibly_damaging(0.778) TCGA-NC-A5HD-01 15 88678508 88678508 C A NTRK3 Missense_Mutation p.R343L 0.62 tolerated(0.17) benign(0.01) TCGA-NC-A5HD-01 16 21080848 21080848 C T DNAH3 Nonsense_Mutation p.W1090* 0.65 TCGA-NC-A5HD-01 16 24231245 24231245 T G PRKCB 3'UTR 0.52 TCGA-NC-A5HD-01 16 24373176 24373176 C A CACNG3 Missense_Mutation p.P314T 0.40 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HD-01 16 26146980 26146980 C A HS3ST4 Missense_Mutation p.T261N 0.58 deleterious(0) probably_damaging(1) TCGA-NC-A5HD-01 16 30583443 30583443 C T ZNF688 5'UTR 0.26 TCGA-NC-A5HD-01 16 56906673 56906673 G T SLC12A3 Missense_Mutation p.G357V 0.41 deleterious(0) probably_damaging(1) TCGA-NC-A5HD-01 16 57732924 57732924 G A CCDC135 Silent p.E122E 0.23 TCGA-NC-A5HD-01 16 57799465 57799465 G A KIFC3 Missense_Mutation p.A473V 0.27 tolerated(0.09) benign(0.074) TCGA-NC-A5HD-01 16 66657354 66657354 C A CMTM4 Missense_Mutation p.V139L 0.20 deleterious(0.04) benign(0.058) TCGA-NC-A5HD-01 16 68009767 68009767 G T DPEP3 Silent p.T481T 0.43 TCGA-NC-A5HD-01 16 68867302 68867302 C T CDH1 Missense_Mutation p.S850F 0.18 deleterious(0) probably_damaging(1) TCGA-NC-A5HD-01 16 71773136 71773136 C A AP1G1 Splice_Site p.X706_splice 0.36 TCGA-NC-A5HD-01 16 71773137 71773137 C T AP1G1 Missense_Mutation p.G706S 0.34 tolerated(0.9) benign(0.006) TCGA-NC-A5HD-01 16 74491847 74491847 C G GLG1 Missense_Mutation p.D1064H 0.13 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HD-01 16 9856983 9856983 G T GRIN2A 3'UTR 0.61 TCGA-NC-A5HD-01 16 9934944 9934944 C G GRIN2A Missense_Mutation p.G449A 0.30 tolerated(0.14) probably_damaging(0.996) TCGA-NC-A5HD-01 17 18181643 18181643 G T TOP3A Missense_Mutation p.L725I 0.48 tolerated(0.33) benign(0.003) TCGA-NC-A5HD-01 17 26942202 26942202 T C KIAA0100 Silent p.E2196E 0.40 TCGA-NC-A5HD-01 17 33498343 33498343 C T UNC45B Silent p.T566T 0.17 TCGA-NC-A5HD-01 17 36484008 36484008 G C GPR179 Missense_Mutation p.A1815G 0.27 deleterious(0.01) possibly_damaging(0.637) TCGA-NC-A5HD-01 17 37596736 37596736 C T MED1 Missense_Mutation p.C101Y 0.41 deleterious(0) probably_damaging(0.99) TCGA-NC-A5HD-01 17 3786377 3786377 G T CAMKK1 Missense_Mutation p.L203M 0.50 tolerated(0.24) probably_damaging(1) TCGA-NC-A5HD-01 17 37922369 37922369 G C IKZF3 Missense_Mutation p.Q402E 0.20 tolerated(1) benign(0.044) TCGA-NC-A5HD-01 17 39334188 39334188 G C KRTAP4-2 Missense_Mutation p.R77G 0.20 deleterious(0.02) probably_damaging(0.949) TCGA-NC-A5HD-01 17 40475022 40475022 C T STAT3 Missense_Mutation p.G630S 0.18 deleterious(0.01) probably_damaging(0.979) TCGA-NC-A5HD-01 17 42745419 42745419 G T C17orf104 Missense_Mutation p.D714Y 0.45 deleterious(0) probably_damaging(0.994) TCGA-NC-A5HD-01 17 45759788 45759788 G C KPNB1 3'UTR 0.21 TCGA-NC-A5HD-01 17 47126731 47126731 C A IGF2BP1 Silent p.I553I 0.17 TCGA-NC-A5HD-01 17 49365466 49365466 A G UTP18 Missense_Mutation p.I469V 0.20 tolerated(0.4) benign(0.02) TCGA-NC-A5HD-01 17 54969580 54969580 T A TRIM25 Missense_Mutation p.K458N 0.42 tolerated(0.46) benign(0.081) TCGA-NC-A5HD-01 17 66871460 66871460 T C ABCA8 Silent p.Q1484Q 0.27 TCGA-NC-A5HD-01 17 6920683 6920683 G C C17orf49 3'UTR 0.62 TCGA-NC-A5HD-01 17 72436352 72436352 G T GPRC5C Missense_Mutation p.R191L 0.36 deleterious(0.03) probably_damaging(0.925) TCGA-NC-A5HD-01 17 73495084 73495084 C G KIAA0195 Missense_Mutation p.L1307V 0.50 tolerated(0.15) possibly_damaging(0.648) TCGA-NC-A5HD-01 17 73564772 73564772 A G LLGL2 Missense_Mutation p.M418V 0.28 tolerated(0.4) benign(0.066) TCGA-NC-A5HD-01 17 7577100 7577100 T C TP53 Missense_Mutation p.R280G 0.49 deleterious(0) probably_damaging(0.947) TCGA-NC-A5HD-01 17 78317043 78317043 G A RNF213 Missense_Mutation p.R2034Q 0.22 benign(0) TCGA-NC-A5HD-01 17 80041122 80041122 G A FASN Missense_Mutation p.R1841C 0.23 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HD-01 18 12308713 12308713 G C TUBB6 Missense_Mutation p.G29R 0.61 deleterious_low_confidence(0) benign(0.073) TCGA-NC-A5HD-01 18 14542986 14542986 T G POTEC Missense_Mutation p.M54L 0.15 deleterious_low_confidence(0.03) benign(0.008) TCGA-NC-A5HD-01 18 22807403 22807403 C A ZNF521 Missense_Mutation p.S160I 0.46 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HD-01 18 28934708 28934708 C A DSG1 Missense_Mutation p.S850Y 0.64 deleterious(0) possibly_damaging(0.73) TCGA-NC-A5HD-01 18 29049065 29049065 C A DSG3 Silent p.L550L 0.57 TCGA-NC-A5HD-01 18 55024363 55024363 C A ST8SIA3 Missense_Mutation p.S174R 0.63 probably_damaging(1) TCGA-NC-A5HD-01 18 55398970 55398970 A - ATP8B1 Frame_Shift_Del p.Y24Tfs*57 0.37 TCGA-NC-A5HD-01 18 8784305 8784305 G A SOGA2 Missense_Mutation p.E399K 0.58 deleterious(0.01) possibly_damaging(0.627) TCGA-NC-A5HD-01 19 11034810 11034810 C G YIPF2 Silent p.T142T 0.54 TCGA-NC-A5HD-01 19 13397492 13397492 G T CACNA1A Missense_Mutation p.N1126K 0.50 possibly_damaging(0.859) TCGA-NC-A5HD-01 19 21720620 21720620 G A ZNF429 Missense_Mutation p.G589R 0.63 tolerated(0.07) possibly_damaging(0.762) TCGA-NC-A5HD-01 19 22362720 22362720 C T ZNF676 3'UTR 0.41 TCGA-NC-A5HD-01 19 22574683 22574683 G T ZNF98 Missense_Mutation p.H452N 0.52 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HD-01 19 36038053 36038053 G C TMEM147 Missense_Mutation p.W154C 0.69 deleterious(0) probably_damaging(0.995) TCGA-NC-A5HD-01 19 36111008 36111008 G C HAUS5 Missense_Mutation p.G501R 0.65 tolerated(0.12) probably_damaging(1) TCGA-NC-A5HD-01 19 36335096 36335096 C G NPHS1 Missense_Mutation p.W707C 0.27 deleterious(0.01) possibly_damaging(0.687) TCGA-NC-A5HD-01 19 36556918 36556918 G T WDR62 Splice_Site p.X130_splice 0.64 TCGA-NC-A5HD-01 19 39760211 39760211 C A IFNL2 Silent p.A118A 0.63 TCGA-NC-A5HD-01 19 40430295 40430295 C T FCGBP Missense_Mutation p.V550I 0.67 benign(0.252) TCGA-NC-A5HD-01 19 43430741 43430741 G T PSG7 Missense_Mutation p.S279R 0.58 tolerated(0.33) benign(0.093) TCGA-NC-A5HD-01 19 44128340 44128340 C T CADM4 Missense_Mutation p.G328D 0.09 deleterious(0.02) probably_damaging(0.984) TCGA-NC-A5HD-01 19 44514764 44514764 G C ZNF230 Missense_Mutation p.L191F 0.59 tolerated(0.42) possibly_damaging(0.71) TCGA-NC-A5HD-01 19 4548061 4548061 G T SEMA6B Missense_Mutation p.Q527K 0.61 tolerated(0.06) probably_damaging(0.973) TCGA-NC-A5HD-01 19 4548062 4548062 G T SEMA6B Nonsense_Mutation p.C526* 0.61 TCGA-NC-A5HD-01 19 49671336 49671336 C T TRPM4 Missense_Mutation p.R144W 0.05 deleterious(0) probably_damaging(0.973) TCGA-NC-A5HD-01 19 50909527 50909527 G T POLD1 Missense_Mutation p.R444L 0.57 deleterious(0) probably_damaging(0.983) TCGA-NC-A5HD-01 19 54254468 54254468 C - MIR522 RNA 0.40 TCGA-NC-A5HD-01 19 54742932 54742932 A T LILRA6 Missense_Mutation p.L448H 0.81 deleterious(0.03) benign(0.428) TCGA-NC-A5HD-01 19 55424135 55424135 T C NCR1 Missense_Mutation p.W271R 0.52 tolerated(0.34) benign(0.429) TCGA-NC-A5HD-01 19 57953378 57953378 A T ZNF749 Silent p.V47V 0.63 TCGA-NC-A5HD-01 19 58083729 58083729 T C ZNF416 Missense_Mutation p.I515V 0.28 tolerated(1) benign(0.184) TCGA-NC-A5HD-01 19 58287981 58287981 A T ZNF586 Missense_Mutation p.Q36L 0.59 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HD-01 19 8997529 8997532 GCTG CCT MUC16 Frame_Shift_Del p.S13631Gfs*59 0.34 TCGA-NC-A5HD-01 1 100327878 100327878 A G AGL Missense_Mutation p.H120R 0.37 tolerated(0.34) benign(0.001) TCGA-NC-A5HD-01 1 11333507 11333507 C T UBIAD1 5'UTR 0.19 TCGA-NC-A5HD-01 1 117634480 117634480 G C TTF2 Missense_Mutation p.A905P 0.10 tolerated(0.11) benign(0.078) TCGA-NC-A5HD-01 1 119427492 119427492 G T TBX15 Missense_Mutation p.L452M 0.45 tolerated_low_confidence(0.11) probably_damaging(0.996) TCGA-NC-A5HD-01 1 12429741 12429741 A G VPS13D Missense_Mutation p.T3598A 0.29 benign(0.006) TCGA-NC-A5HD-01 1 146658451 146658451 G T FMO5 3'UTR 0.06 TCGA-NC-A5HD-01 1 150917419 150917419 A T SETDB1 Missense_Mutation p.E325D 0.41 tolerated(0.11) benign(0.026) TCGA-NC-A5HD-01 1 151171420 151171420 G A PIP5K1A 5'UTR 0.34 TCGA-NC-A5HD-01 1 154942922 154942922 C A SHC1 Silent p.G27G 0.38 TCGA-NC-A5HD-01 1 155288540 155288540 A C FDPS Missense_Mutation p.K257Q 0.36 tolerated(0.24) benign(0.001) TCGA-NC-A5HD-01 1 156347956 156347956 T A RHBG Intron 0.37 TCGA-NC-A5HD-01 1 156498388 156498388 C A IQGAP3 Missense_Mutation p.G1529V 0.33 deleterious(0.01) benign(0.371) TCGA-NC-A5HD-01 1 156503896 156503896 C G IQGAP3 Missense_Mutation p.E1260Q 0.31 tolerated(0.06) probably_damaging(0.96) TCGA-NC-A5HD-01 1 156505027 156505027 T A IQGAP3 Silent p.R1145R 0.41 TCGA-NC-A5HD-01 1 156785583 156785583 G T SH2D2A Intron 0.36 TCGA-NC-A5HD-01 1 157069315 157069315 T C ETV3L Translation_Start_Site p.M1? 0.48 deleterious(0.01) probably_damaging(0.931) TCGA-NC-A5HD-01 1 157556202 157556202 C A FCRL4 Silent p.G297G 0.35 TCGA-NC-A5HD-01 1 158226664 158226664 G T CD1A Missense_Mutation p.K231N 0.43 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HD-01 1 158585051 158585051 A T SPTA1 Missense_Mutation p.L2248H 0.34 deleterious(0) probably_damaging(1) TCGA-NC-A5HD-01 1 158612764 158612764 C T SPTA1 Nonsense_Mutation p.W1482* 0.11 TCGA-NC-A5HD-01 1 165632287 165632287 T A ALDH9A1 Nonstop_Mutation p.*519Cext*27 0.21 TCGA-NC-A5HD-01 1 166831466 166831466 C G TADA1 Missense_Mutation p.V172L 0.44 deleterious(0.01) possibly_damaging(0.801) TCGA-NC-A5HD-01 1 173930884 173930884 C T RC3H1 Silent p.Q727Q 0.38 TCGA-NC-A5HD-01 1 174244968 174244968 T C RABGAP1L Intron 0.34 TCGA-NC-A5HD-01 1 181721309 181721309 C G CACNA1E Missense_Mutation p.I1254M 0.16 deleterious(0.01) possibly_damaging(0.9) TCGA-NC-A5HD-01 1 192335114 192335114 T A RGS21 Missense_Mutation p.C107S 0.33 tolerated(0.38) benign(0.068) TCGA-NC-A5HD-01 1 196296004 196296004 A G KCNT2 Missense_Mutation p.Y707H 0.16 tolerated(0.09) benign(0.003) TCGA-NC-A5HD-01 1 196709877 196709877 G A CFH Missense_Mutation p.A971T 0.34 tolerated(0.09) benign(0.016) TCGA-NC-A5HD-01 1 196758801 196758801 T A CFHR3 Intron 0.25 TCGA-NC-A5HD-01 1 197404300 197404300 G A CRB1 Missense_Mutation p.G1103R 0.46 deleterious(0) probably_damaging(0.916) TCGA-NC-A5HD-01 1 197643258 197643258 G A DENND1B Silent p.D56D 0.37 TCGA-NC-A5HD-01 1 197890463 197890463 G T LHX9 Missense_Mutation p.C136F 0.45 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HD-01 1 200567543 200567543 C A KIF14 Nonsense_Mutation p.G791* 0.41 TCGA-NC-A5HD-01 1 202702921 202702921 C T KDM5B Missense_Mutation p.D1173N 0.35 tolerated(0.5) benign(0.001) TCGA-NC-A5HD-01 1 204587006 204587006 C T LRRN2 Silent p.L705L 0.13 TCGA-NC-A5HD-01 1 207195505 207195505 G A C1orf116 Missense_Mutation p.T535M 0.11 tolerated(0.18) possibly_damaging(0.476) TCGA-NC-A5HD-01 1 207640231 207640231 C A CR2 Missense_Mutation p.P140Q 0.35 deleterious(0) probably_damaging(0.987) TCGA-NC-A5HD-01 1 215990497 215990497 C T USH2A Missense_Mutation p.G3138S 0.37 probably_damaging(1) TCGA-NC-A5HD-01 1 220752842 220752842 A G MARK1 Missense_Mutation p.I66M 0.43 deleterious(0) probably_damaging(0.991) TCGA-NC-A5HD-01 1 222753141 222753141 G T TAF1A Missense_Mutation p.A122D 0.31 tolerated(0.2) probably_damaging(0.951) TCGA-NC-A5HD-01 1 225152250 225152250 T C DNAH14 Missense_Mutation p.L146S 0.19 tolerated(0.08) possibly_damaging(0.671) TCGA-NC-A5HD-01 1 237608798 237608798 T C RYR2 Missense_Mutation p.V423A 0.15 benign(0.027) TCGA-NC-A5HD-01 1 237802423 237802423 C A RYR2 Missense_Mutation p.A2346E 0.33 probably_damaging(0.968) TCGA-NC-A5HD-01 1 237837512 237837512 G C RYR2 Missense_Mutation p.V2903L 0.36 possibly_damaging(0.56) TCGA-NC-A5HD-01 1 237850791 237850791 G C RYR2 Missense_Mutation p.R3018S 0.24 possibly_damaging(0.622) TCGA-NC-A5HD-01 1 237870254 237870254 A T RYR2 Missense_Mutation p.S3196C 0.29 possibly_damaging(0.541) TCGA-NC-A5HD-01 1 237870344 237870344 A T RYR2 Missense_Mutation p.I3226F 0.36 benign(0.042) TCGA-NC-A5HD-01 1 2411709 2411709 C G PLCH2 Silent p.L174L 0.25 TCGA-NC-A5HD-01 1 247712352 247712352 T A GCSAML 5'Flank 0.47 TCGA-NC-A5HD-01 1 24785418 24785419 - T NIPAL3 Frame_Shift_Ins p.A273Cfs*51 0.41 TCGA-NC-A5HD-01 1 248525373 248525373 A T OR2T4 Missense_Mutation p.Y164F 0.32 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HD-01 1 26688405 26688405 G T ZNF683 Missense_Mutation p.H418N 0.60 tolerated(0.25) benign(0.022) TCGA-NC-A5HD-01 1 27099103 27099103 C - ARID1A Frame_Shift_Del p.P1175Hfs*5 0.42 TCGA-NC-A5HD-01 1 32687547 32687547 G T TMEM234 Missense_Mutation p.A30D 0.41 tolerated(0.34) benign(0.037) TCGA-NC-A5HD-01 1 46976321 46976321 G C DMBX1 Missense_Mutation p.V110L 0.52 tolerated(0.08) probably_damaging(0.924) TCGA-NC-A5HD-01 1 52821920 52821920 G T CC2D1B Silent p.A670A 0.49 TCGA-NC-A5HD-01 1 59147557 59147557 G C MYSM1 Missense_Mutation p.Q387E 0.21 tolerated(0.11) benign(0.17) TCGA-NC-A5HD-01 1 70671125 70671125 C T LRRC40 Silent p.K33K 0.47 TCGA-NC-A5HD-01 1 74507017 74507017 A G LRRIQ3 Missense_Mutation p.L533P 0.18 deleterious(0.05) benign(0.332) TCGA-NC-A5HD-01 1 75037514 75037514 G T C1orf173 Missense_Mutation p.P1294T 0.20 tolerated(0.19) possibly_damaging(0.544) TCGA-NC-A5HD-01 1 75038628 75038628 C G C1orf173 Silent p.L922L 0.48 TCGA-NC-A5HD-01 1 75107012 75107012 C A C1orf173 Intron 0.45 TCGA-NC-A5HD-01 1 75608804 75608804 A T LHX8 Missense_Mutation p.R131W 0.21 deleterious(0) probably_damaging(0.934) TCGA-NC-A5HD-01 1 76877898 76877898 C G ST6GALNAC3 Missense_Mutation p.P140R 0.39 probably_damaging(0.954) TCGA-NC-A5HD-01 1 82417651 82417651 G T LPHN2 Missense_Mutation p.G536V 0.35 deleterious(0.01) probably_damaging(0.969) TCGA-NC-A5HD-01 1 86529409 86529409 G T COL24A1 Missense_Mutation p.P581T 0.39 tolerated(0.09) benign(0.068) TCGA-NC-A5HD-01 1 86961316 86961316 C T CLCA1 Nonsense_Mutation p.Q691* 0.38 TCGA-NC-A5HD-01 1 87599357 87599357 C G RP5-1052I5.2 Nonsense_Mutation p.S276* 0.17 TCGA-NC-A5HD-01 1 89250390 89250390 A G PKN2 Missense_Mutation p.T352A 0.42 tolerated(0.88) benign(0.001) TCGA-NC-A5HD-01 1 89615112 89615112 C A GBP7 Missense_Mutation p.A339S 0.32 tolerated(0.25) possibly_damaging(0.612) TCGA-NC-A5HD-01 1 89849258 89849258 G C GBP6 Missense_Mutation p.E471D 0.43 tolerated(0.08) possibly_damaging(0.904) TCGA-NC-A5HD-01 1 91859821 91859821 C T HFM1 Missense_Mutation p.G108E 0.30 tolerated_low_confidence(0.38) benign(0.002) TCGA-NC-A5HD-01 1 94586567 94586567 C T ABCA4 Nonsense_Mutation p.W12* 0.37 TCGA-NC-A5HD-01 1 94955518 94955518 G C ABCD3 Missense_Mutation p.D437H 0.18 deleterious(0) probably_damaging(0.966) TCGA-NC-A5HD-01 1 99157160 99157160 A C SNX7 Silent p.R182R 0.33 TCGA-NC-A5HD-01 20 13269209 13269209 C T ISM1 Silent p.D222D 0.26 TCGA-NC-A5HD-01 20 16351242 16351242 G C KIF16B Missense_Mutation p.L1163V 0.13 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-NC-A5HD-01 20 18529346 18529346 G T SEC23B Missense_Mutation p.D613Y 0.27 deleterious(0.02) probably_damaging(0.976) TCGA-NC-A5HD-01 20 1961597 1961597 G T PDYN Missense_Mutation p.S46Y 0.25 deleterious(0) probably_damaging(0.935) TCGA-NC-A5HD-01 20 25457689 25457689 C A NINL Silent p.S746S 0.35 TCGA-NC-A5HD-01 20 3278818 3278818 G A C20orf194 Missense_Mutation p.S596F 0.26 deleterious(0) probably_damaging(0.983) TCGA-NC-A5HD-01 20 34541769 34541769 C T SCAND1 Silent p.Q146Q 0.27 TCGA-NC-A5HD-01 20 34572603 34572603 G T CNBD2 Nonsense_Mutation p.E207* 0.28 TCGA-NC-A5HD-01 20 42168872 42168872 G T L3MBTL1 Missense_Mutation p.W730L 0.45 deleterious(0) probably_damaging(0.983) TCGA-NC-A5HD-01 20 43379242 43379242 C G KCNK15 Missense_Mutation p.D252E 0.29 tolerated(1) benign(0.004) TCGA-NC-A5HD-01 20 45242327 45242327 A C SLC13A3 Missense_Mutation p.V50G 0.21 deleterious(0) benign(0.077) TCGA-NC-A5HD-01 20 48456122 48456122 C G SLC9A8 Missense_Mutation p.L112V 0.34 tolerated(0.23) benign(0.155) TCGA-NC-A5HD-01 20 61340985 61340985 C A NTSR1 Silent p.R142R 0.40 TCGA-NC-A5HD-01 21 11038974 11038974 A T BAGE2 RNA 0.04 TCGA-NC-A5HD-01 21 11049504 11049504 G C BAGE2 RNA 0.13 TCGA-NC-A5HD-01 21 22658588 22658588 G T NCAM2 Splice_Site p.X113_splice 0.54 TCGA-NC-A5HD-01 21 22838992 22838992 G T NCAM2 Nonsense_Mutation p.G574* 0.45 TCGA-NC-A5HD-01 21 31802888 31802888 T C KRTAP13-4 Missense_Mutation p.S99P 0.67 deleterious(0.02) benign(0.443) TCGA-NC-A5HD-01 21 34860953 34860953 T A DNAJC28 Missense_Mutation p.N250Y 0.69 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HD-01 21 46686197 46686197 G A POFUT2 Intron 0.59 TCGA-NC-A5HD-01 22 21133844 21133844 C A SERPIND1 Missense_Mutation p.L82M 0.77 deleterious(0.04) probably_damaging(0.917) TCGA-NC-A5HD-01 22 21322183 21322183 C A AIFM3 5'UTR 0.80 TCGA-NC-A5HD-01 22 21327731 21327731 C G AIFM3 Missense_Mutation p.S56C 0.65 tolerated_low_confidence(0.12) possibly_damaging(0.533) TCGA-NC-A5HD-01 22 23077408 23077408 G T IGLV2-18 Missense_Mutation p.G62V 0.10 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-NC-A5HD-01 22 26291141 26291141 G C MYO18B Missense_Mutation p.R1521P 0.22 deleterious(0) probably_damaging(0.976) TCGA-NC-A5HD-01 22 30951282 30951282 G A GAL3ST1 Silent p.H310H 0.45 TCGA-NC-A5HD-01 22 33327439 33327439 C G SYN3 Missense_Mutation p.A133P 0.28 deleterious(0) unknown(0) TCGA-NC-A5HD-01 22 37332667 37332667 G T CSF2RB Missense_Mutation p.W514L 0.27 tolerated(0.39) benign(0.008) TCGA-NC-A5HD-01 22 37770025 37770025 G C ELFN2 Missense_Mutation p.P517R 0.31 tolerated(1) benign(0.002) TCGA-NC-A5HD-01 22 38021881 38021881 C T GGA1 Missense_Mutation p.R340C 0.47 tolerated(0.06) benign(0.001) TCGA-NC-A5HD-01 22 50617536 50617536 A T PANX2 Missense_Mutation p.T622S 0.26 tolerated_low_confidence(0.24) benign(0.007) TCGA-NC-A5HD-01 2 105889333 105889333 A C TGFBRAP1 Missense_Mutation p.Y651D 0.30 deleterious(0) probably_damaging(1) TCGA-NC-A5HD-01 2 105912957 105912957 G T TGFBRAP1 Silent p.I298I 0.16 TCGA-NC-A5HD-01 2 108487175 108487175 A T RGPD4 Silent p.T905T 0.19 TCGA-NC-A5HD-01 2 113993116 113993116 C - PAX8 Frame_Shift_Del p.S315Pfs*111 0.14 TCGA-NC-A5HD-01 2 116572491 116572491 G T DPP10 Missense_Mutation p.G612V 0.12 deleterious(0) probably_damaging(1) TCGA-NC-A5HD-01 2 118864721 118864721 G C INSIG2 Missense_Mutation p.A198P 0.15 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HD-01 2 128367447 128367447 C G MYO7B Silent p.V1016V 0.20 TCGA-NC-A5HD-01 2 136380264 136380264 A G R3HDM1 Silent p.L153L 0.28 TCGA-NC-A5HD-01 2 141283513 141283513 C T LRP1B Silent p.G2642G 0.14 TCGA-NC-A5HD-01 2 141751695 141751695 C A LRP1B Missense_Mutation p.G838V 0.25 possibly_damaging(0.766) TCGA-NC-A5HD-01 2 144765072 144765072 T A GTDC1 Missense_Mutation p.L184F 0.31 tolerated(0.21) benign(0.008) TCGA-NC-A5HD-01 2 152496872 152496872 G A NEB Silent p.S2894S 0.42 TCGA-NC-A5HD-01 2 163055338 163055338 C A FAP Missense_Mutation p.R444M 0.11 tolerated(0.2) probably_damaging(1) TCGA-NC-A5HD-01 2 166892733 166892733 C A SCN1A Missense_Mutation p.G1085V 0.41 tolerated(0.13) probably_damaging(0.943) TCGA-NC-A5HD-01 2 167322482 167322482 A G SCN7A Missense_Mutation p.V227A 0.27 deleterious(0.01) benign(0.052) TCGA-NC-A5HD-01 2 168101540 168101540 G T XIRP2 Missense_Mutation p.S1213I 0.33 probably_damaging(0.936) TCGA-NC-A5HD-01 2 174820770 174820770 C A SP3 Missense_Mutation p.G157V 0.40 deleterious(0) probably_damaging(0.996) TCGA-NC-A5HD-01 2 182468675 182468675 T A CERKL Missense_Mutation p.I124F 0.44 tolerated(0.46) benign(0.002) TCGA-NC-A5HD-01 2 183129138 183129138 T C PDE1A Silent p.L35L 0.36 TCGA-NC-A5HD-01 2 185801272 185801272 C A ZNF804A Missense_Mutation p.N383K 0.34 tolerated(0.26) benign(0.049) TCGA-NC-A5HD-01 2 185801780 185801780 T G ZNF804A Missense_Mutation p.C553G 0.28 tolerated(0.16) benign(0.248) TCGA-NC-A5HD-01 2 185803627 185803627 G A ZNF804A Silent p.Q1168Q 0.39 TCGA-NC-A5HD-01 2 187627037 187627037 G T FAM171B Missense_Mutation p.Q656H 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-NC-A5HD-01 2 196602600 196602600 C A DNAH7 3'UTR 0.20 TCGA-NC-A5HD-01 2 196753583 196753583 C T DNAH7 Missense_Mutation p.M1723I 0.38 deleterious(0) benign(0.146) TCGA-NC-A5HD-01 2 211444446 211444446 A T CPS1 Silent p.A166A 0.32 TCGA-NC-A5HD-01 2 21229186 21229186 G T APOB Missense_Mutation p.N3518K 0.25 benign(0.066) TCGA-NC-A5HD-01 2 21251360 21251360 A T APOB Missense_Mutation p.D556E 0.26 benign(0.018) TCGA-NC-A5HD-01 2 216177138 216177138 C T ATIC Intron 0.14 TCGA-NC-A5HD-01 2 220427176 220427176 C T OBSL1 Silent p.E967E 0.05 TCGA-NC-A5HD-01 2 228767789 228767789 G C DAW1 Missense_Mutation p.W204C 0.40 deleterious(0) probably_damaging(0.967) TCGA-NC-A5HD-01 2 234746270 234746270 C G HJURP Missense_Mutation p.E734Q 0.36 tolerated(0.19) benign(0.004) TCGA-NC-A5HD-01 2 242066715 242066715 C T PASK Missense_Mutation p.D539N 0.37 tolerated(0.07) possibly_damaging(0.49) TCGA-NC-A5HD-01 2 27001102 27001102 G A SLC35F6 Missense_Mutation p.G280D 0.14 deleterious(0) probably_damaging(1) TCGA-NC-A5HD-01 2 27263644 27263644 G A TMEM214 Missense_Mutation p.C670Y 0.46 tolerated(1) benign(0) TCGA-NC-A5HD-01 2 27551373 27551373 T C GTF3C2 Missense_Mutation p.N740D 0.47 tolerated(0.13) benign(0.053) TCGA-NC-A5HD-01 2 31564253 31564253 C A XDH Missense_Mutation p.R1176L 0.38 deleterious(0) possibly_damaging(0.878) TCGA-NC-A5HD-01 2 32690131 32690131 A G BIRC6 Splice_Site p.X1753_splice 0.15 TCGA-NC-A5HD-01 2 39082259 39082259 T C DHX57 Silent p.K615K 0.47 TCGA-NC-A5HD-01 2 46203638 46203638 G T PRKCE Missense_Mutation p.R161S 0.42 deleterious(0) possibly_damaging(0.704) TCGA-NC-A5HD-01 2 48936134 48936134 C T LHCGR Silent p.E211E 0.51 TCGA-NC-A5HD-01 2 50724505 50724505 C T NRXN1 Missense_Mutation p.G989R 0.14 tolerated(0.08) probably_damaging(0.998) TCGA-NC-A5HD-01 2 61181230 61181230 T C PUS10 Missense_Mutation p.K374R 0.44 tolerated(0.41) benign(0.011) TCGA-NC-A5HD-01 2 61575564 61575564 T A USP34 Missense_Mutation p.S576C 0.49 deleterious_low_confidence(0.05) probably_damaging(0.981) TCGA-NC-A5HD-01 2 70900105 70900105 G C ADD2 Nonsense_Mutation p.S592* 0.40 TCGA-NC-A5HD-01 2 71360443 71360443 G A MPHOSPH10 Missense_Mutation p.E169K 0.19 deleterious(0.01) probably_damaging(0.924) TCGA-NC-A5HD-01 2 73679454 73679454 C G ALMS1 Missense_Mutation p.P1933A 0.19 benign(0.406) TCGA-NC-A5HD-01 2 84518041 84518041 G A FUNDC2P2 RNA 0.26 TCGA-NC-A5HD-01 2 87201372 87201372 C A RGPD1 Missense_Mutation p.L476I 0.11 tolerated(0.21) benign(0.329) TCGA-NC-A5HD-01 2 90078084 90078084 C A IGKV3D-20 Missense_Mutation p.L41I 0.44 tolerated(1) benign(0.048) TCGA-NC-A5HD-01 2 98341673 98341673 A T ZAP70 Missense_Mutation p.E174V 0.20 deleterious(0) probably_damaging(1) TCGA-NC-A5HD-01 2 98378552 98378552 C A TMEM131 Missense_Mutation p.C1612F 0.42 tolerated_low_confidence(0.79) benign(0) TCGA-NC-A5HD-01 3 112534675 112534675 T A CD200R1L 3'UTR 0.47 TCGA-NC-A5HD-01 3 113955186 113955186 C A ZNF80 Nonsense_Mutation p.E246* 0.31 TCGA-NC-A5HD-01 3 113956040 113956040 C A ZNF80 5'UTR 0.47 TCGA-NC-A5HD-01 3 119459402 119459402 G C MAATS1 Missense_Mutation p.E514Q 0.40 tolerated(0.11) possibly_damaging(0.756) TCGA-NC-A5HD-01 3 120673795 120673795 G C STXBP5L Silent p.R66R 0.06 TCGA-NC-A5HD-01 3 120973867 120973867 T G STXBP5L Missense_Mutation p.C523G 0.45 deleterious(0) possibly_damaging(0.741) TCGA-NC-A5HD-01 3 121707148 121707148 C T ILDR1 3'UTR 0.11 TCGA-NC-A5HD-01 3 124351475 124351475 T A KALRN Missense_Mutation p.D98E 0.32 tolerated(0.47) benign(0.034) TCGA-NC-A5HD-01 3 124653564 124653564 G A MUC13 5'UTR 0.48 TCGA-NC-A5HD-01 3 142775246 142775246 G C U2SURP Missense_Mutation p.R1015T 0.32 tolerated(0.8) unknown(0) TCGA-NC-A5HD-01 3 145917776 145917776 C A PLSCR4 Missense_Mutation p.D150Y 0.41 deleterious(0) possibly_damaging(0.9) TCGA-NC-A5HD-01 3 14693308 14693308 A G CCDC174 5'UTR 0.61 TCGA-NC-A5HD-01 3 147128687 147128687 G T ZIC1 Missense_Mutation p.G263V 0.22 deleterious(0) probably_damaging(1) TCGA-NC-A5HD-01 3 150404095 150404095 A G FAM194A Silent p.S200S 0.33 TCGA-NC-A5HD-01 3 153867201 153867201 G C ARHGEF26 Missense_Mutation p.Q431H 0.43 deleterious(0.04) benign(0.005) TCGA-NC-A5HD-01 3 157823865 157823865 T C SHOX2 5'UTR 0.52 TCGA-NC-A5HD-01 3 173999131 173999131 G T NLGN1 3'UTR 0.16 TCGA-NC-A5HD-01 3 179298787 179298787 C G ACTL6A Silent p.S312S 0.17 TCGA-NC-A5HD-01 3 179501961 179501961 C T USP13 3'UTR 0.06 TCGA-NC-A5HD-01 3 179615980 179615980 G A PEX5L Missense_Mutation p.P50S 0.76 deleterious_low_confidence(0) unknown(0) TCGA-NC-A5HD-01 3 184099548 184099548 C T CHRD Nonsense_Mutation p.R186* 0.12 TCGA-NC-A5HD-01 3 184429590 184429590 C G MAGEF1 Missense_Mutation p.S7T 0.34 tolerated_low_confidence(0.21) benign(0.018) TCGA-NC-A5HD-01 3 192053182 192053182 C A FGF12 Missense_Mutation p.A128S 0.12 deleterious(0.01) possibly_damaging(0.9) TCGA-NC-A5HD-01 3 2942398 2942398 G T CNTN4 Missense_Mutation p.D324Y 0.52 deleterious(0) probably_damaging(0.992) TCGA-NC-A5HD-01 3 2942419 2942419 G T CNTN4 Nonsense_Mutation p.E331* 0.47 TCGA-NC-A5HD-01 3 45877217 45877217 G T LZTFL1 Missense_Mutation p.A63D 0.38 deleterious(0.05) benign(0.049) TCGA-NC-A5HD-01 3 77617533 77617533 G T ROBO2 Missense_Mutation p.R656L 0.34 deleterious(0.02) benign(0.409) TCGA-NC-A5HD-01 3 8675614 8675614 G T SSUH2 Intron 0.52 TCGA-NC-A5HD-01 3 89259054 89259054 G T EPHA3 Missense_Mutation p.R66S 0.39 deleterious(0) probably_damaging(0.989) TCGA-NC-A5HD-01 3 96706687 96706687 T A EPHA6 Missense_Mutation p.S322T 0.39 tolerated(0.17) probably_damaging(0.996) TCGA-NC-A5HD-01 3 97806097 97806097 C A OR5AC2 Silent p.V27V 0.28 TCGA-NC-A5HD-01 3 97887583 97887583 C G OR5H15 Missense_Mutation p.L14V 0.22 deleterious(0) possibly_damaging(0.45) TCGA-NC-A5HD-01 4 101401100 101401100 G A EMCN Missense_Mutation p.T54I 0.25 tolerated(0.19) probably_damaging(0.961) TCGA-NC-A5HD-01 4 10567743 10567743 G T CLNK Missense_Mutation p.A61E 0.55 tolerated(0.26) benign(0.003) TCGA-NC-A5HD-01 4 109675823 109675823 A G ETNPPL Missense_Mutation p.Y152H 0.61 deleterious(0) probably_damaging(1) TCGA-NC-A5HD-01 4 118975048 118975048 G C NDST3 5'UTR 0.35 TCGA-NC-A5HD-01 4 122803515 122803515 T A TRPC3 Missense_Mutation p.N873Y 0.59 deleterious(0) possibly_damaging(0.84) TCGA-NC-A5HD-01 4 124235229 124235229 T G SPATA5 3'UTR 0.59 TCGA-NC-A5HD-01 4 140307310 140307310 G T NAA15 Missense_Mutation p.D776Y 0.57 deleterious(0) probably_damaging(0.98) TCGA-NC-A5HD-01 4 156289692 156289692 G T MAP9 Intron 0.58 TCGA-NC-A5HD-01 4 169188786 169188786 C A DDX60 Missense_Mutation p.G996C 0.69 deleterious(0.01) possibly_damaging(0.664) TCGA-NC-A5HD-01 4 17609066 17609066 G T LAP3 Missense_Mutation p.V472L 0.43 deleterious(0.01) probably_damaging(0.985) TCGA-NC-A5HD-01 4 176572996 176572996 A C GPM6A Missense_Mutation p.L177R 0.69 deleterious(0.04) possibly_damaging(0.848) TCGA-NC-A5HD-01 4 20525415 20525415 G C SLIT2 Missense_Mutation p.R388P 0.55 deleterious(0.04) possibly_damaging(0.498) TCGA-NC-A5HD-01 4 22390193 22390193 G C GPR125 Missense_Mutation p.T1034R 0.58 deleterious(0.04) benign(0.409) TCGA-NC-A5HD-01 4 2339218 2339218 A T ZFYVE28 Missense_Mutation p.V176D 0.79 deleterious(0) probably_damaging(0.986) TCGA-NC-A5HD-01 4 47939551 47939551 A T CNGA1 Silent p.S389S 0.63 TCGA-NC-A5HD-01 4 53494140 53494140 A G USP46 Missense_Mutation p.I103T 0.61 deleterious(0) possibly_damaging(0.547) TCGA-NC-A5HD-01 4 87683920 87683920 C G PTPN13 Missense_Mutation p.N1198K 0.24 tolerated(0.22) benign(0.197) TCGA-NC-A5HD-01 4 88295850 88295850 C G HSD17B11 Splice_Site p.X150_splice 0.59 TCGA-NC-A5HD-01 4 88766322 88766322 G T MEPE Missense_Mutation p.S101I 0.52 tolerated(0.1) benign(0.2) TCGA-NC-A5HD-01 4 94316786 94316786 T G GRID2 Missense_Mutation p.L425R 0.32 deleterious(0) probably_damaging(0.993) TCGA-NC-A5HD-01 5 108168533 108168533 G C FER Missense_Mutation p.E90D 0.60 tolerated(0.24) benign(0.039) TCGA-NC-A5HD-01 5 110440437 110440437 G C WDR36 Missense_Mutation p.L372F 0.47 tolerated(0.1) probably_damaging(1) TCGA-NC-A5HD-01 5 127599204 127599204 G T FBN2 Missense_Mutation p.S2702Y 0.60 tolerated(1) benign(0.37) TCGA-NC-A5HD-01 5 128368946 128368946 C G SLC27A6 Missense_Mutation p.Q611E 0.25 tolerated(0.12) benign(0.041) TCGA-NC-A5HD-01 5 140580854 140580854 C A PCDHB11 Missense_Mutation p.L503M 0.59 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-NC-A5HD-01 5 140581506 140581506 C A PCDHB11 Missense_Mutation p.A720D 0.56 deleterious_low_confidence(0) possibly_damaging(0.548) TCGA-NC-A5HD-01 5 140595290 140595290 G C PCDHB13 Missense_Mutation p.G532A 0.54 deleterious_low_confidence(0.02) benign(0.019) TCGA-NC-A5HD-01 5 140783068 140783068 G T PCDHGA9 Missense_Mutation p.Q183H 0.55 deleterious_low_confidence(0.02) benign(0.274) TCGA-NC-A5HD-01 5 141334614 141334614 G T PCDH12 Missense_Mutation p.L935M 0.53 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HD-01 5 141334615 141334615 G T PCDH12 Missense_Mutation p.S934R 0.54 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HD-01 5 154339592 154339592 G A MRPL22 Missense_Mutation p.R131K 0.60 tolerated(1) benign(0.007) TCGA-NC-A5HD-01 5 156593097 156593097 A T FAM71B Missense_Mutation p.L28Q 0.59 deleterious(0) probably_damaging(1) TCGA-NC-A5HD-01 5 169111336 169111336 A T DOCK2 Missense_Mutation p.N248I 0.62 tolerated(0.19) benign(0.001) TCGA-NC-A5HD-01 5 174156432 174156432 C A MSX2 Missense_Mutation p.P217H 0.65 tolerated(0.16) benign(0.086) TCGA-NC-A5HD-01 5 175740810 175740810 C T SIMC1 Silent p.N183N 0.57 TCGA-NC-A5HD-01 5 178413590 178413590 G T GRM6 Nonsense_Mutation p.C555* 0.53 TCGA-NC-A5HD-01 5 24487926 24487926 T C CDH10 Missense_Mutation p.Y738C 0.34 deleterious(0) probably_damaging(0.996) TCGA-NC-A5HD-01 5 24593548 24593548 G T CDH10 Missense_Mutation p.H18N 0.10 tolerated(0.3) benign(0) TCGA-NC-A5HD-01 5 40972604 40972604 G T C7 Missense_Mutation p.G661V 0.24 tolerated(0.36) benign(0.1) TCGA-NC-A5HD-01 5 41382265 41382265 C A PLCXD3 Missense_Mutation p.V159F 0.24 tolerated(0.1) benign(0.414) TCGA-NC-A5HD-01 5 434128 434128 T C AHRR Missense_Mutation p.S447P 0.25 tolerated(0.32) benign(0.007) TCGA-NC-A5HD-01 5 71495082 71495082 C T MAP1B Missense_Mutation p.P1967L 0.59 benign(0.317) TCGA-NC-A5HD-01 5 77458661 77458661 G T AP3B1 Missense_Mutation p.L449M 0.62 deleterious(0.02) probably_damaging(0.991) TCGA-NC-A5HD-01 5 7789855 7789855 A G ADCY2 Missense_Mutation p.E857G 0.12 deleterious(0) possibly_damaging(0.787) TCGA-NC-A5HD-01 5 89923326 89923326 A T GPR98 Missense_Mutation p.D324V 0.56 probably_damaging(0.937) TCGA-NC-A5HD-01 5 95236712 95236712 A C ELL2 Missense_Mutation p.W272G 0.64 deleterious(0) probably_damaging(1) TCGA-NC-A5HD-01 6 110935854 110935854 G A CDK19 Silent p.L465L 0.51 TCGA-NC-A5HD-01 6 112041166 112041166 T C FYN Missense_Mutation p.Y30C 0.08 deleterious(0.02) probably_damaging(0.998) TCGA-NC-A5HD-01 6 116265549 116265549 T G FRK Missense_Mutation p.D333A 0.49 deleterious(0) probably_damaging(0.977) TCGA-NC-A5HD-01 6 117121823 117121823 A T GPRC6A Missense_Mutation p.M491K 0.24 deleterious(0) benign(0.105) TCGA-NC-A5HD-01 6 119501520 119501520 A T MAN1A1 Missense_Mutation p.Y598N 0.24 deleterious(0.02) benign(0.413) TCGA-NC-A5HD-01 6 121447550 121447550 C G TBC1D32 Missense_Mutation p.C986S 0.21 tolerated(0.25) probably_damaging(0.962) TCGA-NC-A5HD-01 6 125366483 125366483 G T RNF217 Missense_Mutation p.G45C 0.41 deleterious(0.04) probably_damaging(0.934) TCGA-NC-A5HD-01 6 125397944 125397944 A T RNF217 Nonsense_Mutation p.K183* 0.20 TCGA-NC-A5HD-01 6 133013613 133013613 C A VNN1 Missense_Mutation p.V313L 0.53 tolerated(0.12) benign(0.003) TCGA-NC-A5HD-01 6 136599626 136599626 C G BCLAF1 Silent p.R131R 0.18 TCGA-NC-A5HD-01 6 138197249 138197249 G T TNFAIP3 Missense_Mutation p.G251C 0.44 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HD-01 6 138583848 138583848 G A KIAA1244 Missense_Mutation p.G410S 0.23 tolerated(0.44) probably_damaging(0.976) TCGA-NC-A5HD-01 6 143818584 143818584 C T FUCA2 Nonsense_Mutation p.W402* 0.34 TCGA-NC-A5HD-01 6 144759981 144759981 C T UTRN Missense_Mutation p.P448S 0.09 tolerated(0.08) benign(0.053) TCGA-NC-A5HD-01 6 144794898 144794898 G A UTRN Missense_Mutation p.D1037N 0.26 tolerated(0.12) possibly_damaging(0.672) TCGA-NC-A5HD-01 6 144898369 144898369 G T UTRN Missense_Mutation p.R2475L 0.20 deleterious(0) probably_damaging(1) TCGA-NC-A5HD-01 6 147124514 147124514 C A ADGB Intron 0.48 TCGA-NC-A5HD-01 6 151773549 151773549 T G C6orf211 5'UTR 0.50 TCGA-NC-A5HD-01 6 15246765 15246765 C G JARID2 5'UTR 0.38 TCGA-NC-A5HD-01 6 158924382 158924382 G T TULP4 Silent p.P1229P 0.46 TCGA-NC-A5HD-01 6 160899640 160899640 C A LPAL2 RNA 0.19 TCGA-NC-A5HD-01 6 167595295 167595295 A - TCP10L2 Frame_Shift_Del p.K319Nfs*43 0.18 TCGA-NC-A5HD-01 6 24871094 24871094 C G FAM65B Missense_Mutation p.K120N 0.44 deleterious(0) probably_damaging(0.991) TCGA-NC-A5HD-01 6 25450900 25450900 G - LRRC16A Frame_Shift_Del p.E193Nfs*2 0.29 TCGA-NC-A5HD-01 6 25769327 25769327 C T SLC17A4 Missense_Mutation p.A69V 0.29 tolerated(0.29) benign(0.048) TCGA-NC-A5HD-01 6 26377229 26377229 A G BTN3A2 3'UTR 0.29 TCGA-NC-A5HD-01 6 26428958 26428958 G T BTN2A3P RNA 0.41 TCGA-NC-A5HD-01 6 2749488 2749488 T G MYLK4 Missense_Mutation p.Y14S 0.31 tolerated_low_confidence(0.05) benign(0.112) TCGA-NC-A5HD-01 6 28872055 28872055 C A TRIM27 Missense_Mutation p.G445V 0.58 deleterious(0) probably_damaging(1) TCGA-NC-A5HD-01 6 30126239 30126239 C T TRIM10 Silent p.R231R 0.64 TCGA-NC-A5HD-01 6 30557720 30557720 C T ABCF1 Silent p.H734H 0.56 TCGA-NC-A5HD-01 6 30859244 30859244 A G DDR1 Missense_Mutation p.H218R 0.60 tolerated(0.34) benign(0.071) TCGA-NC-A5HD-01 6 3155957 3155957 A C TUBB2A Missense_Mutation p.V60G 0.41 deleterious_low_confidence(0) possibly_damaging(0.821) TCGA-NC-A5HD-01 6 33541515 33541515 G A BAK1 3'UTR 0.44 TCGA-NC-A5HD-01 6 33541868 33541868 C A BAK1 Silent p.V158V 0.48 TCGA-NC-A5HD-01 6 45870729 45870729 C A CLIC5 3'UTR 0.53 TCGA-NC-A5HD-01 6 51640659 51640659 T A PKHD1 Missense_Mutation p.E2834V 0.25 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HD-01 6 51947222 51947222 G C PKHD1 Missense_Mutation p.F83L 0.23 tolerated(0.23) benign(0.008) TCGA-NC-A5HD-01 6 70637828 70637828 G T COL19A1 Missense_Mutation p.E98D 0.25 tolerated(0.51) unknown(0) TCGA-NC-A5HD-01 6 75866010 75866010 C A COL12A1 Missense_Mutation p.M1071I 0.14 benign(0) TCGA-NC-A5HD-01 6 99887670 99887670 G T USP45 Missense_Mutation p.A712E 0.38 deleterious(0) probably_damaging(0.99) TCGA-NC-A5HD-01 7 100551432 100551432 C G MUC3A Missense_Mutation p.D61E 0.07 tolerated(0.16) benign(0.043) TCGA-NC-A5HD-01 7 100679553 100679553 G A MUC17 Missense_Mutation p.S1619N 0.26 unknown(0) TCGA-NC-A5HD-01 7 103557599 103557599 A T RELN Nonsense_Mutation p.L87* 0.51 TCGA-NC-A5HD-01 7 113522357 113522357 T C PPP1R3A Silent p.V267V 0.12 TCGA-NC-A5HD-01 7 113558408 113558408 A G PPP1R3A Missense_Mutation p.V215A 0.22 tolerated(0.07) benign(0.029) TCGA-NC-A5HD-01 7 117431329 117431329 C A CTTNBP2 Missense_Mutation p.A641S 0.44 tolerated(0.85) benign(0.014) TCGA-NC-A5HD-01 7 120428550 120428550 T A TSPAN12 3'UTR 0.18 TCGA-NC-A5HD-01 7 121653053 121653053 C G PTPRZ1 Nonsense_Mutation p.S1318* 0.47 TCGA-NC-A5HD-01 7 123508612 123508612 G - HYAL4 Frame_Shift_Del p.G96Dfs*21 0.30 TCGA-NC-A5HD-01 7 123516921 123516921 G A HYAL4 Silent p.R386R 0.17 TCGA-NC-A5HD-01 7 128588775 128588775 C G IRF5 Missense_Mutation p.S483C 0.41 deleterious(0.01) possibly_damaging(0.454) TCGA-NC-A5HD-01 7 135320372 135320372 A G NUP205 Silent p.L1701L 0.22 TCGA-NC-A5HD-01 7 139416219 139416219 C A HIPK2 Missense_Mutation p.L205F 0.53 deleterious(0) probably_damaging(1) TCGA-NC-A5HD-01 7 142000780 142000780 G T TRBV2 5'UTR 0.56 TCGA-NC-A5HD-01 7 142224231 142224231 G A TRBV11-1 Missense_Mutation p.L13F 0.27 tolerated(0.12) benign(0.157) TCGA-NC-A5HD-01 7 142448595 142448595 T A TRBV29-1 Silent p.T63T 0.08 TCGA-NC-A5HD-01 7 142983658 142983658 C G TMEM139 Missense_Mutation p.S129R 0.05 tolerated(0.19) benign(0.031) TCGA-NC-A5HD-01 7 146829601 146829601 G - CNTNAP2 Frame_Shift_Del 0.32 TCGA-NC-A5HD-01 7 147926793 147926793 C T CNTNAP2 Silent p.D1101D 0.19 TCGA-NC-A5HD-01 7 149490447 149490447 C T SSPO RNA 0.47 TCGA-NC-A5HD-01 7 150439537 150439537 T - GIMAP5 Frame_Shift_Del p.Y104Tfs*14 0.28 TCGA-NC-A5HD-01 7 151962177 151962177 G C KMT2C Missense_Mutation p.P377R 0.06 probably_damaging(0.917) TCGA-NC-A5HD-01 7 157361640 157361640 G T PTPRN2 Missense_Mutation p.S952R 0.48 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HD-01 7 18801866 18801866 G T HDAC9 Silent p.L710L 0.17 TCGA-NC-A5HD-01 7 20739693 20739693 G T ABCB5 Missense_Mutation p.G758C 0.12 deleterious(0.03) probably_damaging(0.998) TCGA-NC-A5HD-01 7 21913005 21913005 A T DNAH11 Silent p.T4034T 0.46 TCGA-NC-A5HD-01 7 23213643 23213643 A T KLHL7 Missense_Mutation p.D496V 0.18 tolerated(0.07) probably_damaging(0.994) TCGA-NC-A5HD-01 7 34010006 34010006 G T BMPER Silent p.L156L 0.41 TCGA-NC-A5HD-01 7 37936584 37936584 C G NME8 Missense_Mutation p.R553G 0.36 deleterious(0) probably_damaging(1) TCGA-NC-A5HD-01 7 42005104 42005104 G A GLI3 Silent p.R1189R 0.39 TCGA-NC-A5HD-01 7 42005544 42005544 T A GLI3 Missense_Mutation p.S1043C 0.20 deleterious(0.01) possibly_damaging(0.566) TCGA-NC-A5HD-01 7 43483846 43483846 C A HECW1 Missense_Mutation p.P359T 0.48 tolerated_low_confidence(0.1) benign(0.019) TCGA-NC-A5HD-01 7 43483847 43483847 C A HECW1 Missense_Mutation p.P359H 0.48 tolerated_low_confidence(0.08) possibly_damaging(0.873) TCGA-NC-A5HD-01 7 44247068 44247068 G C YKT6 Missense_Mutation p.D124H 0.31 deleterious(0.05) benign(0.11) TCGA-NC-A5HD-01 7 45018551 45018551 C A MYO1G Nonsense_Mutation p.E4* 0.18 TCGA-NC-A5HD-01 7 50468053 50468053 G A IKZF1 Missense_Mutation p.E388K 0.49 deleterious(0.02) possibly_damaging(0.726) TCGA-NC-A5HD-01 7 50560632 50560632 C G DDC Intron 0.29 TCGA-NC-A5HD-01 7 5104750 5104750 A T RBAK Missense_Mutation p.T555S 0.22 tolerated(0.21) probably_damaging(0.991) TCGA-NC-A5HD-01 7 53103720 53103720 G T POM121L12 Missense_Mutation p.C119F 0.22 tolerated(0.13) probably_damaging(0.919) TCGA-NC-A5HD-01 7 64151710 64151710 A G ZNF107 5'UTR 0.17 TCGA-NC-A5HD-01 7 72850048 72850048 G T FZD9 Missense_Mutation p.A571S 0.16 tolerated(0.5) benign(0.008) TCGA-NC-A5HD-01 7 8791394 8791394 G T NXPH1 Nonsense_Mutation p.G271* 0.43 TCGA-NC-A5HD-01 7 88963420 88963420 A G ZNF804B Missense_Mutation p.H375R 0.25 deleterious(0) benign(0.007) TCGA-NC-A5HD-01 7 893207 893208 - G SUN1 Frame_Shift_Ins p.P407Afs*17 0.38 TCGA-NC-A5HD-01 7 90894671 90894671 T G FZD1 Missense_Mutation p.V159G 0.37 deleterious(0.02) probably_damaging(0.958) TCGA-NC-A5HD-01 7 94024362 94024362 A T COL1A2 Missense_Mutation p.T7S 0.25 unknown(0) TCGA-NC-A5HD-01 8 100796592 100796592 G C VPS13B Missense_Mutation p.C2635S 0.14 deleterious(0) benign(0.415) TCGA-NC-A5HD-01 8 107718911 107718911 A T OXR1 Missense_Mutation p.T389S 0.78 tolerated(0.82) benign(0.004) TCGA-NC-A5HD-01 8 110455909 110455909 A G PKHD1L1 Silent p.G1523G 0.85 TCGA-NC-A5HD-01 8 110986293 110986293 C T KCNV1 Missense_Mutation p.A109T 0.54 tolerated(0.56) benign(0.015) TCGA-NC-A5HD-01 8 116426904 116426904 C A TRPS1 Missense_Mutation p.G1078C 0.81 deleterious_low_confidence(0) probably_damaging(1) TCGA-NC-A5HD-01 8 124787443 124787443 C G FAM91A1 Missense_Mutation p.R72G 0.84 deleterious(0) possibly_damaging(0.866) TCGA-NC-A5HD-01 8 13357631 13357631 A G DLC1 5'UTR 0.46 TCGA-NC-A5HD-01 8 133827074 133827074 A C PHF20L1 Missense_Mutation p.I375L 0.84 tolerated(0.55) benign(0.007) TCGA-NC-A5HD-01 8 135614641 135614641 C A ZFAT Missense_Mutation p.A441S 0.22 tolerated(0.16) benign(0.347) TCGA-NC-A5HD-01 8 141771290 141771290 C T PTK2 Missense_Mutation p.V436I 0.71 deleterious(0) benign(0.081) TCGA-NC-A5HD-01 8 143545830 143545830 G A BAI1 Missense_Mutation p.V91M 0.33 tolerated(0.14) possibly_damaging(0.623) TCGA-NC-A5HD-01 8 144995187 144995187 C A PLEC Silent p.T3071T 0.78 TCGA-NC-A5HD-01 8 26722483 26722483 C T ADRA1A Missense_Mutation p.V2M 0.39 deleterious_low_confidence(0.02) benign(0.073) TCGA-NC-A5HD-01 8 27925107 27925107 T C NUGGC Missense_Mutation p.N212S 0.37 tolerated(1) benign(0.002) TCGA-NC-A5HD-01 8 28997642 28997642 C T KIF13B Missense_Mutation p.G851S 0.22 tolerated(0.25) benign(0.295) TCGA-NC-A5HD-01 8 30699973 30699973 T C TEX15 Silent p.P2187P 0.67 TCGA-NC-A5HD-01 8 35608128 35608128 C A UNC5D Missense_Mutation p.T655K 0.14 tolerated(0.12) possibly_damaging(0.859) TCGA-NC-A5HD-01 8 38003560 38003560 T G STAR Missense_Mutation p.K191Q 0.15 tolerated(0.42) benign(0.027) TCGA-NC-A5HD-01 8 48639782 48639782 G A SPIDR Missense_Mutation p.E788K 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-NC-A5HD-01 8 618736 618736 C A ERICH1 Missense_Mutation p.D374Y 0.37 tolerated(0.06) benign(0.001) TCGA-NC-A5HD-01 8 87460612 87460612 A G WWP1 Missense_Mutation p.I715V 0.69 tolerated(0.09) probably_damaging(0.99) TCGA-NC-A5HD-01 9 101778304 101778304 C T COL15A1 Missense_Mutation p.P517L 0.62 tolerated_low_confidence(0.07) benign(0.003) TCGA-NC-A5HD-01 9 102768873 102768873 T C ERP44 Missense_Mutation p.I311V 0.65 deleterious(0.01) benign(0.069) TCGA-NC-A5HD-01 9 117666252 117666252 C A TNFSF8 Nonsense_Mutation p.E222* 0.67 TCGA-NC-A5HD-01 9 125424192 125424192 G T OR1L1 Silent p.L66L 0.59 TCGA-NC-A5HD-01 9 130413892 130413892 T G STXBP1 Missense_Mutation p.H16Q 0.56 deleterious(0.05) benign(0.022) TCGA-NC-A5HD-01 9 134323133 134323133 T A PRRC2B Missense_Mutation p.N354K 0.23 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HD-01 9 135863759 135863759 C A GFI1B Nonsense_Mutation p.Y138* 0.61 TCGA-NC-A5HD-01 9 140062251 140062251 G T GRIN1 Missense_Mutation p.G930V 0.62 deleterious_low_confidence(0) probably_damaging(1) TCGA-NC-A5HD-01 9 35091792 35091792 C T PIGO Missense_Mutation p.E698K 0.65 tolerated(0.25) benign(0.189) TCGA-NC-A5HD-01 9 95040537 95040537 C A IARS Missense_Mutation p.M259I 0.62 deleterious(0.04) possibly_damaging(0.555) TCGA-NC-A5HD-01 9 99694041 99694041 T A NUTM2G Silent p.P18P 0.68 TCGA-NC-A5HD-01 X 101097757 101097757 C T NXF5 Missense_Mutation p.R3Q 0.78 tolerated(0.4) benign(0.001) TCGA-NC-A5HD-01 X 107869448 107869448 G T COL4A5 Missense_Mutation p.G1039C 0.66 unknown(0) TCGA-NC-A5HD-01 X 109298569 109298569 G A TMEM164 Intron 0.76 TCGA-NC-A5HD-01 X 132670134 132670134 G T GPC3 3'UTR 0.75 TCGA-NC-A5HD-01 X 137821460 137821460 C A FGF13 Intron 0.76 TCGA-NC-A5HD-01 X 153421872 153421872 C A OPN1LW Missense_Mutation p.P283H 0.74 deleterious(0) probably_damaging(1) TCGA-NC-A5HD-01 X 19028791 19028791 A T GPR64 Missense_Mutation p.I402N 0.74 deleterious(0) possibly_damaging(0.836) TCGA-NC-A5HD-01 X 24089708 24089708 G T EIF2S3 Missense_Mutation p.R349L 0.65 deleterious(0) probably_damaging(0.96) TCGA-NC-A5HD-01 X 41031130 41031130 C G USP9X Missense_Mutation p.Q1023E 0.73 tolerated(0.16) benign(0.012) TCGA-NC-A5HD-01 X 48629428 48629428 C G GLOD5 Missense_Mutation p.P96R 0.27 deleterious(0) probably_damaging(0.986) TCGA-NC-A5HD-01 X 55287002 55287002 A G PAGE3 Missense_Mutation p.L95P 0.78 tolerated(0.05) probably_damaging(0.973) TCGA-NC-A5HD-01 X 73068062 73068062 G C XIST RNA 0.38 TCGA-NC-A5HD-01 X 78618143 78618143 T C ITM2A Missense_Mutation p.M163V 0.56 deleterious(0.01) benign(0.145) TCGA-NC-A5HD-01 X 79286123 79286123 G A TBX22 Missense_Mutation p.C359Y 0.68 tolerated(0.09) benign(0.014) TCGA-NC-A5HD-01 X 88009141 88009141 A T CPXCR1 Silent p.I242I 0.88 TCGA-NC-A5HE-01 10 124358473 124358473 G A DMBT1 Missense_Mutation p.R1047Q 0.13 tolerated(0.36) unknown(0) TCGA-NC-A5HE-01 10 17171765 17171765 C T CUBN 5'UTR 0.10 TCGA-NC-A5HE-01 10 18690907 18690907 G C CACNB2 Missense_Mutation p.E90Q 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-NC-A5HE-01 10 31791375 31791375 C T ZEB1 Missense_Mutation p.P141L 0.17 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HE-01 10 37430836 37430836 C T ANKRD30A Silent p.D281D 0.15 TCGA-NC-A5HE-01 10 43651233 43651233 A G CSGALNACT2 Missense_Mutation p.I212M 0.14 tolerated(0.08) benign(0.005) TCGA-NC-A5HE-01 10 45984816 45984816 T A MARCH8 Missense_Mutation p.K51M 0.23 deleterious(0.01) possibly_damaging(0.897) TCGA-NC-A5HE-01 10 50678297 50678297 C T ERCC6 Missense_Mutation p.E1237K 0.11 deleterious(0.03) benign(0.027) TCGA-NC-A5HE-01 10 67748493 67748493 G A CTNNA3 Missense_Mutation p.S741L 0.14 tolerated(0.18) unknown(0) TCGA-NC-A5HE-01 10 7608119 7608119 G T ITIH5 Missense_Mutation p.Q801K 0.10 tolerated(1) benign(0.426) TCGA-NC-A5HE-01 10 7608120 7608120 G T ITIH5 Silent p.I800I 0.10 TCGA-NC-A5HE-01 10 83635546 83635546 G A NRG3 Silent p.T150T 0.16 TCGA-NC-A5HE-01 10 86008680 86008680 G T RGR Missense_Mutation p.R84L 0.09 tolerated(0.25) benign(0.246) TCGA-NC-A5HE-01 10 93998 93998 G C TUBB8 Missense_Mutation p.L112V 0.06 deleterious_low_confidence(0) benign(0.357) TCGA-NC-A5HE-01 11 100169919 100169919 G T CNTN5 Missense_Mutation p.G804V 0.24 deleterious(0) probably_damaging(1) TCGA-NC-A5HE-01 11 101375013 101375013 G A TRPC6 Silent p.C229C 0.17 TCGA-NC-A5HE-01 11 4661794 4661794 C A OR51D1 Silent p.L258L 0.11 TCGA-NC-A5HE-01 11 50003556 50003556 G C OR4C12 Missense_Mutation p.T161R 0.28 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-NC-A5HE-01 11 51411732 51411732 G T OR4A5 Missense_Mutation p.L222I 0.10 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-NC-A5HE-01 11 55433147 55433147 C G OR4C6 Missense_Mutation p.P169A 0.12 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-NC-A5HE-01 11 55595130 55595130 T A OR5L2 Missense_Mutation p.S146T 0.14 tolerated(0.2) benign(0.107) TCGA-NC-A5HE-01 11 5776177 5776177 C T OR52N4 Silent p.S69S 0.18 TCGA-NC-A5HE-01 11 6238772 6238772 C G FAM160A2 Missense_Mutation p.E696Q 0.14 tolerated(0.09) benign(0.436) TCGA-NC-A5HE-01 11 66475077 66475077 G A SPTBN2 Silent p.A521A 0.20 TCGA-NC-A5HE-01 12 106890640 106890640 C T POLR3B Silent p.L976L 0.13 TCGA-NC-A5HE-01 12 107386618 107386618 C - CRY1 Frame_Shift_Del p.E570Kfs*39 0.09 TCGA-NC-A5HE-01 12 114282568 114282568 C G RBM19 Missense_Mutation p.S897T 0.12 deleterious(0) probably_damaging(1) TCGA-NC-A5HE-01 12 117715830 117715830 C G NOS1 Missense_Mutation p.G533A 0.04 deleterious(0) probably_damaging(0.984) TCGA-NC-A5HE-01 12 117728232 117728232 C A NOS1 Splice_Site p.X285_splice 0.19 TCGA-NC-A5HE-01 12 12274309 12274309 G A LRP6 Silent p.P1531P 0.28 TCGA-NC-A5HE-01 12 21965067 21965067 T G ABCC9 Missense_Mutation p.D1376A 0.36 deleterious(0) probably_damaging(0.977) TCGA-NC-A5HE-01 12 39726100 39726100 C A KIF21A Missense_Mutation p.M989I 0.12 tolerated(1) benign(0.001) TCGA-NC-A5HE-01 12 41967270 41967270 G T PDZRN4 Missense_Mutation p.G897W 0.08 deleterious(0) probably_damaging(1) TCGA-NC-A5HE-01 12 41967271 41967271 G T PDZRN4 Missense_Mutation p.G897V 0.08 deleterious(0) probably_damaging(1) TCGA-NC-A5HE-01 12 52380708 52380708 C G ACVR1B Missense_Mutation p.R456G 0.16 deleterious(0) possibly_damaging(0.888) TCGA-NC-A5HE-01 12 55042149 55042149 C T DCD 5'UTR 0.23 TCGA-NC-A5HE-01 12 56092578 56092578 A G ITGA7 Missense_Mutation p.L309P 0.14 deleterious(0) probably_damaging(0.99) TCGA-NC-A5HE-01 12 56231754 56231754 A G MMP19 Silent p.Y311Y 0.16 TCGA-NC-A5HE-01 12 7842845 7842845 G T GDF3 Missense_Mutation p.Q242K 0.33 deleterious(0.05) benign(0.118) TCGA-NC-A5HE-01 12 8074223 8074223 T C SLC2A3 Missense_Mutation p.Y426C 0.32 tolerated(0.07) possibly_damaging(0.778) TCGA-NC-A5HE-01 12 94763620 94763620 G C CCDC41 Intron 0.19 TCGA-NC-A5HE-01 13 102366889 102366889 C A ITGBL1 Missense_Mutation p.L461I 0.09 tolerated(0.32) benign(0.176) TCGA-NC-A5HE-01 13 114549537 114549537 C T GAS6 Silent p.P102P 0.23 TCGA-NC-A5HE-01 13 32691572 32691572 A T FRY Silent p.S142S 0.18 TCGA-NC-A5HE-01 13 44455198 44455198 A C LACC1 Missense_Mutation p.K26T 0.12 deleterious_low_confidence(0.03) benign(0.075) TCGA-NC-A5HE-01 13 72049980 72049980 G T DACH1 Silent p.A626A 0.18 TCGA-NC-A5HE-01 13 73649905 73649905 G C KLF5 Missense_Mutation p.E419Q 0.20 deleterious(0) probably_damaging(0.988) TCGA-NC-A5HE-01 14 106208481 106208481 G T IGHG1 Missense_Mutation p.P140H 0.12 deleterious(0) probably_damaging(1) TCGA-NC-A5HE-01 14 20388961 20388961 C T OR4K5 Missense_Mutation p.L66F 0.09 deleterious(0) probably_damaging(0.973) TCGA-NC-A5HE-01 14 20528786 20528786 C G OR4L1 Missense_Mutation p.L195V 0.18 tolerated(0.08) benign(0.384) TCGA-NC-A5HE-01 14 31081495 31081495 G T G2E3 Missense_Mutation p.R528I 0.18 deleterious(0) probably_damaging(0.949) TCGA-NC-A5HE-01 14 76620781 76620781 G A GPATCH2L Nonsense_Mutation p.W25* 0.18 TCGA-NC-A5HE-01 15 40662350 40662350 A T DISP2 Missense_Mutation p.E1346V 0.07 deleterious(0) probably_damaging(1) TCGA-NC-A5HE-01 15 40855046 40855046 C T C15orf57 Missense_Mutation p.A66T 0.12 tolerated(0.62) benign(0.01) TCGA-NC-A5HE-01 15 43621834 43621834 C A LCMT2 Missense_Mutation p.R285L 0.13 tolerated(0.08) benign(0.004) TCGA-NC-A5HE-01 15 65157878 65157878 C T PLEKHO2 Nonsense_Mutation p.Q422* 0.09 TCGA-NC-A5HE-01 15 74177423 74177423 C A TBC1D21 Missense_Mutation p.F186L 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-NC-A5HE-01 15 78213750 78213750 G C RP11-114H24.7 Intron 0.39 TCGA-NC-A5HE-01 15 82554085 82554085 A G EFTUD1 Missense_Mutation p.L12P 0.27 deleterious(0) probably_damaging(0.967) TCGA-NC-A5HE-01 15 84488690 84488690 A G ADAMTSL3 Missense_Mutation p.K164R 0.13 tolerated(0.21) benign(0.086) TCGA-NC-A5HE-01 15 89400609 89400609 G T ACAN Missense_Mutation p.G1598V 0.19 tolerated(0.22) probably_damaging(1) TCGA-NC-A5HE-01 16 17292203 17292203 G T XYLT1 Silent p.P385P 0.16 TCGA-NC-A5HE-01 16 20329590 20329590 C A GP2 Silent p.R393R 0.11 TCGA-NC-A5HE-01 16 24942575 24942575 G T ARHGAP17 Missense_Mutation p.T682K 0.17 tolerated_low_confidence(0.51) benign(0.001) TCGA-NC-A5HE-01 16 28970404 28970404 G A NFATC2IP Missense_Mutation p.E362K 0.07 deleterious(0.02) possibly_damaging(0.811) TCGA-NC-A5HE-01 16 31105773 31105773 C A VKORC1 Intron 0.08 TCGA-NC-A5HE-01 16 62055365 62055365 G T CDH8 5'UTR 0.16 TCGA-NC-A5HE-01 16 75674084 75674084 G C KARS Missense_Mutation p.A157G 0.12 tolerated(0.07) possibly_damaging(0.727) TCGA-NC-A5HE-01 16 77389864 77389864 C A ADAMTS18 Missense_Mutation p.S478I 0.16 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HE-01 17 10215345 10215345 C A MYH13 Nonsense_Mutation p.E1472* 0.09 TCGA-NC-A5HE-01 17 17698369 17698369 A G RAI1 Missense_Mutation p.T703A 0.20 tolerated(0.7) benign(0.001) TCGA-NC-A5HE-01 17 19235168 19235169 GA - EPN2 Frame_Shift_Del p.E472Ifs*16 0.14 TCGA-NC-A5HE-01 17 39983711 39983711 C A NT5C3B Missense_Mutation p.Q245H 0.17 deleterious(0.02) benign(0.012) TCGA-NC-A5HE-01 17 60757243 60757243 C A MRC2 Missense_Mutation p.R760S 0.13 tolerated(0.19) benign(0.44) TCGA-NC-A5HE-01 17 71197368 71197368 G T COG1 Nonsense_Mutation p.E468* 0.17 TCGA-NC-A5HE-01 17 729255 729255 T C NXN Missense_Mutation p.T142A 0.11 deleterious(0.03) possibly_damaging(0.754) TCGA-NC-A5HE-01 17 79226013 79226013 C T SLC38A10 Missense_Mutation p.A643T 0.15 tolerated(0.19) benign(0.004) TCGA-NC-A5HE-01 17 80006593 80006593 T A RFNG 3'UTR 0.17 TCGA-NC-A5HE-01 18 22806301 22806301 G T ZNF521 Silent p.S527S 0.17 TCGA-NC-A5HE-01 18 335000 335000 G C COLEC12 Missense_Mutation p.Q520E 0.15 tolerated(0.16) unknown(0) TCGA-NC-A5HE-01 18 33718280 33718280 G T ELP2 Silent p.A112A 0.19 TCGA-NC-A5HE-01 18 58039167 58039167 C A MC4R Missense_Mutation p.S139I 0.24 deleterious(0.05) probably_damaging(0.998) TCGA-NC-A5HE-01 18 9254802 9254802 G T ANKRD12 Nonsense_Mutation p.E513* 0.12 TCGA-NC-A5HE-01 19 11034595 11034595 C A YIPF2 Missense_Mutation p.G189C 0.21 deleterious(0) probably_damaging(0.987) TCGA-NC-A5HE-01 19 12015673 12015673 A G ZNF69 Missense_Mutation p.Y140C 0.22 tolerated(0.2) benign(0.002) TCGA-NC-A5HE-01 19 15659038 15659038 G A CYP4F22 Missense_Mutation p.R419H 0.11 deleterious(0.01) benign(0.025) TCGA-NC-A5HE-01 19 31025891 31025891 C T ZNF536 Silent p.L770L 0.12 TCGA-NC-A5HE-01 19 33095183 33095183 C G ANKRD27 Missense_Mutation p.D881H 0.08 deleterious(0.02) possibly_damaging(0.861) TCGA-NC-A5HE-01 19 35642541 35642541 C A FXYD7 Missense_Mutation p.T62N 0.20 tolerated(0.25) possibly_damaging(0.777) TCGA-NC-A5HE-01 19 37880268 37880268 G T ZNF527 Missense_Mutation p.E439D 0.10 deleterious(0) probably_damaging(0.992) TCGA-NC-A5HE-01 19 39926527 39926527 G A RPS16 Silent p.S3S 0.13 TCGA-NC-A5HE-01 19 40366248 40366248 G A FCGBP Silent p.F4662F 0.15 TCGA-NC-A5HE-01 19 40541510 40541510 C A ZNF780B Missense_Mutation p.C419F 0.13 deleterious(0) probably_damaging(0.98) TCGA-NC-A5HE-01 19 4792381 4792381 A C FEM1A Missense_Mutation p.Q172P 0.11 tolerated(0.31) possibly_damaging(0.511) TCGA-NC-A5HE-01 19 49335955 49335955 C A HSD17B14 Missense_Mutation p.R82L 0.16 deleterious(0.04) possibly_damaging(0.574) TCGA-NC-A5HE-01 19 49658529 49658529 C T HRC 5'UTR 0.16 TCGA-NC-A5HE-01 19 50128721 50128721 C T PRR12 Silent p.L1990L 0.11 TCGA-NC-A5HE-01 19 52220399 52220399 G A HAS1 Silent p.L250L 0.21 TCGA-NC-A5HE-01 19 52249595 52249595 G A FPR1 Missense_Mutation p.A218V 0.10 tolerated(0.3) benign(0.021) TCGA-NC-A5HE-01 19 53667864 53667864 T A ZNF665 Missense_Mutation p.R627W 0.15 deleterious(0) possibly_damaging(0.879) TCGA-NC-A5HE-01 19 54466666 54466666 C G CACNG8 Missense_Mutation p.I90M 0.23 deleterious(0) probably_damaging(0.974) TCGA-NC-A5HE-01 19 54544162 54544162 T A VSTM1 3'UTR 0.14 TCGA-NC-A5HE-01 19 57956370 57956370 G A ZNF749 Silent p.G618G 0.10 TCGA-NC-A5HE-01 19 58370669 58370669 C A ZNF587 Missense_Mutation p.P297T 0.24 tolerated(0.06) possibly_damaging(0.876) TCGA-NC-A5HE-01 19 9072564 9072564 G A MUC16 Missense_Mutation p.S4961F 0.06 unknown(0) TCGA-NC-A5HE-01 19 9076907 9076907 A T MUC16 Silent p.A3513A 0.13 TCGA-NC-A5HE-01 19 9082761 9082761 G A MUC16 Silent p.S3018S 0.11 TCGA-NC-A5HE-01 1 116233967 116233967 T C VANGL1 Silent p.F514F 0.19 TCGA-NC-A5HE-01 1 1396197 1396197 G C ATAD3C Missense_Mutation p.V294L 0.20 tolerated(0.08) benign(0.015) TCGA-NC-A5HE-01 1 149898584 149898584 G C SF3B4 Silent p.P130P 0.14 TCGA-NC-A5HE-01 1 151006456 151006456 T G PRUNE Missense_Mutation p.S370A 0.16 tolerated(0.62) benign(0) TCGA-NC-A5HE-01 1 156215871 156215871 C T PAQR6 5'UTR 0.17 TCGA-NC-A5HE-01 1 157559177 157559177 G C FCRL4 Missense_Mutation p.L42V 0.18 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HE-01 1 161163511 161163511 G A ADAMTS4 Missense_Mutation p.P552S 0.26 deleterious(0) probably_damaging(1) TCGA-NC-A5HE-01 1 161487860 161487860 C - FCGR2A Frame_Shift_Del p.R294Gfs*12 0.10 TCGA-NC-A5HE-01 1 161496032 161496032 G A HSPA6 Silent p.K528K 0.14 TCGA-NC-A5HE-01 1 166819649 166819649 G A POGK 3'UTR 0.18 TCGA-NC-A5HE-01 1 175067499 175067499 C T TNN Silent p.D629D 0.21 TCGA-NC-A5HE-01 1 177242717 177242717 G A BRINP2 Missense_Mutation p.V255I 0.15 tolerated(0.65) benign(0.017) TCGA-NC-A5HE-01 1 177902693 177902693 C T SEC16B Missense_Mutation p.D884N 0.18 tolerated(0.07) benign(0.01) TCGA-NC-A5HE-01 1 182811698 182811698 A T DHX9 5'UTR 0.14 TCGA-NC-A5HE-01 1 190250736 190250736 A T BRINP3 Silent p.L127L 0.13 TCGA-NC-A5HE-01 1 197627496 197627497 - T DENND1B Nonsense_Mutation p.Y100* 0.13 TCGA-NC-A5HE-01 1 201054690 201054690 C T CACNA1S Missense_Mutation p.E342K 0.25 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HE-01 1 201196205 201196205 A G IGFN1 Missense_Mutation p.Y3661C 0.30 probably_damaging(0.996) TCGA-NC-A5HE-01 1 201926413 201926413 T C TIMM17A Missense_Mutation p.W11R 0.27 tolerated(0.2) probably_damaging(0.999) TCGA-NC-A5HE-01 1 220160582 220160582 T C EPRS Silent p.K980K 0.17 TCGA-NC-A5HE-01 1 228402007 228402007 G T OBSCN Missense_Mutation p.G464V 0.25 probably_damaging(0.998) TCGA-NC-A5HE-01 1 230503768 230503768 C - PGBD5 Intron 0.18 TCGA-NC-A5HE-01 1 234458973 234458973 C A SLC35F3 Missense_Mutation p.P486H 0.22 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-NC-A5HE-01 1 237711867 237711867 G T RYR2 Missense_Mutation p.G1015C 0.21 probably_damaging(0.998) TCGA-NC-A5HE-01 1 248059673 248059673 C A OR2W3 Missense_Mutation p.P262Q 0.16 deleterious(0) probably_damaging(0.995) TCGA-NC-A5HE-01 1 248367065 248367065 G T OR2M3 Missense_Mutation p.E232D 0.13 deleterious(0.04) benign(0.35) TCGA-NC-A5HE-01 1 248367066 248367066 G T OR2M3 Missense_Mutation p.G233C 0.13 deleterious(0.02) probably_damaging(0.981) TCGA-NC-A5HE-01 1 248802055 248802055 A G OR2T35 Missense_Mutation p.C169R 0.35 deleterious(0) probably_damaging(0.948) TCGA-NC-A5HE-01 1 5923297 5923297 C T NPHP4 3'UTR 0.51 TCGA-NC-A5HE-01 1 5969273 5969273 C A NPHP4 Missense_Mutation p.S481I 0.57 deleterious(0.04) benign(0.135) TCGA-NC-A5HE-01 1 6155390 6155390 A G KCNAB2 Missense_Mutation p.Y247C 0.21 deleterious(0.01) benign(0.142) TCGA-NC-A5HE-01 20 13797770 13797770 C G NDUFAF5 Missense_Mutation p.P318A 0.13 tolerated(0.12) benign(0.37) TCGA-NC-A5HE-01 20 31765998 31765998 G T BPIFA2 Silent p.T203T 0.17 TCGA-NC-A5HE-01 20 36954807 36954807 C T BPI Silent p.S382S 0.25 TCGA-NC-A5HE-01 20 60989288 60989288 G A RBBP8NL Silent p.V373V 0.21 TCGA-NC-A5HE-01 21 46066858 46066858 C A KRTAP10-11 Nonsense_Mutation p.C161* 0.05 TCGA-NC-A5HE-01 22 38471031 38471031 T C PICK1 Silent p.D380D 0.29 TCGA-NC-A5HE-01 22 38524325 38524325 G A PLA2G6 Silent p.P433P 0.19 TCGA-NC-A5HE-01 2 103300593 103300593 G A SLC9A2 Missense_Mutation p.G408D 0.10 deleterious(0) probably_damaging(1) TCGA-NC-A5HE-01 2 136566649 136566649 G A LCT Missense_Mutation p.P1090S 0.06 deleterious(0.04) possibly_damaging(0.483) TCGA-NC-A5HE-01 2 136579597 136579597 T C LCT Missense_Mutation p.K327E 0.19 tolerated(0.63) benign(0.003) TCGA-NC-A5HE-01 2 168105535 168105535 A G XIRP2 Missense_Mutation p.M2545V 0.16 probably_damaging(0.996) TCGA-NC-A5HE-01 2 170034503 170034503 C A LRP2 Silent p.T3401T 0.13 TCGA-NC-A5HE-01 2 170416935 170416935 T C FASTKD1 Silent p.V311V 0.17 TCGA-NC-A5HE-01 2 173885444 173885444 G A RAPGEF4 Splice_Site p.X751_splice 0.09 TCGA-NC-A5HE-01 2 177033821 177033821 G T HOXD3 5'UTR 0.48 TCGA-NC-A5HE-01 2 179451510 179451510 A G TTN Missense_Mutation p.L21373S 0.39 TCGA-NC-A5HE-01 2 179612845 179612845 C T TTN Intron 0.10 TCGA-NC-A5HE-01 2 196834786 196834786 C T DNAH7 Silent p.E697E 0.14 TCGA-NC-A5HE-01 2 21237965 21237965 C A APOB Missense_Mutation p.V1226L 0.14 benign(0.006) TCGA-NC-A5HE-01 2 214174857 214174857 C G SPAG16 Missense_Mutation p.I118M 0.20 deleterious(0.03) benign(0.04) TCGA-NC-A5HE-01 2 219288550 219288550 C T VIL1 Missense_Mutation p.P17S 0.11 deleterious(0) possibly_damaging(0.87) TCGA-NC-A5HE-01 2 219896341 219896341 C A CCDC108 Missense_Mutation p.G229W 0.19 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HE-01 2 228881658 228881658 C A SPHKAP Missense_Mutation p.M1304I 0.17 deleterious(0) probably_damaging(0.911) TCGA-NC-A5HE-01 2 233244956 233244956 C A ALPP Missense_Mutation p.P240T 0.23 deleterious(0.02) possibly_damaging(0.884) TCGA-NC-A5HE-01 2 233244957 233244957 C A ALPP Missense_Mutation p.P240Q 0.23 deleterious(0.01) probably_damaging(0.977) TCGA-NC-A5HE-01 2 79878712 79878712 G T CTNNA2 Silent p.L10L 0.19 TCGA-NC-A5HE-01 2 95522743 95522743 C G ANKRD20A8P RNA 0.16 TCGA-NC-A5HE-01 3 115395235 115395235 G A GAP43 Missense_Mutation p.G172S 0.22 tolerated(0.08) benign(0.02) TCGA-NC-A5HE-01 3 119451249 119451249 C A MAATS1 Missense_Mutation p.S376Y 0.28 deleterious(0) possibly_damaging(0.882) TCGA-NC-A5HE-01 3 125874260 125874260 C A ALDH1L1 Missense_Mutation p.K215N 0.10 deleterious_low_confidence(0) possibly_damaging(0.705) TCGA-NC-A5HE-01 3 128060201 128060201 T A EEFSEC Nonsense_Mutation p.C304* 0.33 TCGA-NC-A5HE-01 3 164905992 164905992 C A SLITRK3 Missense_Mutation p.G876V 0.13 tolerated_low_confidence(0.18) probably_damaging(0.972) TCGA-NC-A5HE-01 3 167747026 167747026 G T GOLIM4 Missense_Mutation p.Q500K 0.11 deleterious_low_confidence(0.04) possibly_damaging(0.46) TCGA-NC-A5HE-01 3 170612170 170612170 T C EIF5A2 Missense_Mutation p.T105A 0.19 tolerated(0.13) benign(0.001) TCGA-NC-A5HE-01 3 182871673 182871673 C T LAMP3 Missense_Mutation p.V186I 0.12 tolerated(0.26) benign(0.006) TCGA-NC-A5HE-01 3 192126024 192126024 G A FGF12 5'UTR 0.13 TCGA-NC-A5HE-01 3 193068910 193068910 G A ATP13A5 Silent p.A229A 0.09 TCGA-NC-A5HE-01 3 30875364 30875364 A C GADL1 Missense_Mutation p.L344R 0.14 deleterious(0) possibly_damaging(0.898) TCGA-NC-A5HE-01 3 3095624 3095624 G A CNTN4 Missense_Mutation p.S982N 0.08 deleterious(0.04) unknown(0) TCGA-NC-A5HE-01 3 97806152 97806152 G T OR5AC2 Nonsense_Mutation p.G46* 0.14 TCGA-NC-A5HE-01 3 97806153 97806153 G T OR5AC2 Missense_Mutation p.G46V 0.14 deleterious(0.01) probably_damaging(0.978) TCGA-NC-A5HE-01 4 123333802 123333802 G C ADAD1 Missense_Mutation p.E363Q 0.25 deleterious(0.04) benign(0.394) TCGA-NC-A5HE-01 4 143159098 143159098 C A INPP4B Missense_Mutation p.R252L 0.25 tolerated(0.42) probably_damaging(0.982) TCGA-NC-A5HE-01 4 156717598 156717598 C A GUCY1B3 Missense_Mutation p.R305S 0.08 deleterious(0) possibly_damaging(0.878) TCGA-NC-A5HE-01 4 187509869 187509869 G T FAT1 Missense_Mutation p.D4548E 0.19 probably_damaging(0.998) TCGA-NC-A5HE-01 4 437286 437286 T C ZNF721 Missense_Mutation p.R324G 0.18 deleterious(0) possibly_damaging(0.636) TCGA-NC-A5HE-01 4 44177082 44177082 G C KCTD8 Missense_Mutation p.Q383E 0.19 tolerated(0.14) benign(0.016) TCGA-NC-A5HE-01 4 69682176 69682176 G T UGT2B10 Missense_Mutation p.V147F 0.11 deleterious(0.03) possibly_damaging(0.878) TCGA-NC-A5HE-01 4 71347488 71347488 A G MUC7 Missense_Mutation p.T343A 0.21 deleterious_low_confidence(0) unknown(0) TCGA-NC-A5HE-01 4 74702526 74702526 C T CXCL6 Missense_Mutation p.A20V 0.12 tolerated(0.39) benign(0.028) TCGA-NC-A5HE-01 5 111570397 111570397 C T EPB41L4A Missense_Mutation p.D341N 0.12 tolerated(0.35) benign(0.34) TCGA-NC-A5HE-01 5 11346506 11346506 C A CTNND2 Missense_Mutation p.D536Y 0.16 deleterious(0) probably_damaging(0.996) TCGA-NC-A5HE-01 5 131976496 131976496 G C RAD50 Missense_Mutation p.E1251Q 0.10 deleterious(0.02) probably_damaging(0.927) TCGA-NC-A5HE-01 5 133984750 133984750 C T SEC24A 5'UTR 0.28 TCGA-NC-A5HE-01 5 137727596 137727596 A G KDM3B Missense_Mutation p.N759D 0.15 tolerated_low_confidence(0.19) benign(0.079) TCGA-NC-A5HE-01 5 138857936 138857936 G A TMEM173 Silent p.P226P 0.16 TCGA-NC-A5HE-01 5 140554374 140554374 C T PCDHB7 Missense_Mutation p.S653L 0.05 deleterious_low_confidence(0) possibly_damaging(0.635) TCGA-NC-A5HE-01 5 140625573 140625573 C A PCDHB15 Missense_Mutation p.P143T 0.12 tolerated_low_confidence(0.05) benign(0.35) TCGA-NC-A5HE-01 5 140625574 140625574 C A PCDHB15 Missense_Mutation p.P143Q 0.12 tolerated_low_confidence(0.05) benign(0.047) TCGA-NC-A5HE-01 5 157181950 157181950 C A LSM11 Nonsense_Mutation p.S254* 0.06 TCGA-NC-A5HE-01 5 180053023 180053023 G T FLT4 Missense_Mutation p.Q423K 0.14 tolerated(0.2) benign(0.061) TCGA-NC-A5HE-01 5 33546261 33546261 C A ADAMTS12 Missense_Mutation p.C1450F 0.09 deleterious(0) probably_damaging(1) TCGA-NC-A5HE-01 5 33881284 33881284 G A ADAMTS12 Silent p.G143G 0.19 TCGA-NC-A5HE-01 5 40955612 40955612 G C C7 Missense_Mutation p.W406S 0.16 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HE-01 5 40955613 40955613 G T C7 Missense_Mutation p.W406C 0.16 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HE-01 5 45461993 45461993 C A HCN1 Silent p.L322L 0.09 TCGA-NC-A5HE-01 5 55237322 55237322 G C IL6ST Missense_Mutation p.S782C 0.18 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HE-01 5 666085 666085 C T TPPP Silent p.T155T 0.16 TCGA-NC-A5HE-01 5 71016348 71016348 A T CARTPT Missense_Mutation p.E86V 0.12 deleterious(0) possibly_damaging(0.772) TCGA-NC-A5HE-01 5 82373160 82373160 C G TMEM167A 5'UTR 0.13 TCGA-NC-A5HE-01 6 12934166 12934166 G T PHACTR1 3'UTR 0.29 TCGA-NC-A5HE-01 6 133014327 133014327 A G VNN1 Missense_Mutation p.V221A 0.13 deleterious(0.02) possibly_damaging(0.747) TCGA-NC-A5HE-01 6 133015312 133015312 C G VNN1 Missense_Mutation p.Q117H 0.16 tolerated(0.69) benign(0.001) TCGA-NC-A5HE-01 6 136596691 136596691 A G BCLAF1 Missense_Mutation p.S611P 0.06 deleterious(0) possibly_damaging(0.504) TCGA-NC-A5HE-01 6 155571090 155571090 G A TIAM2 Missense_Mutation p.G1313E 0.08 deleterious(0.01) benign(0.022) TCGA-NC-A5HE-01 6 25773565 25773565 C A SLC17A4 Missense_Mutation p.H257N 0.25 deleterious(0) probably_damaging(1) TCGA-NC-A5HE-01 6 28543284 28543284 A G SCAND3 Missense_Mutation p.C400R 0.24 tolerated_low_confidence(0.77) benign(0) TCGA-NC-A5HE-01 6 32188936 32188936 G A NOTCH4 Silent p.P206P 0.18 TCGA-NC-A5HE-01 6 38794124 38794124 G T DNAH8 Missense_Mutation p.R1130L 0.14 possibly_damaging(0.605) TCGA-NC-A5HE-01 6 44922234 44922234 G A SUPT3H Nonsense_Mutation p.Q242* 0.12 TCGA-NC-A5HE-01 6 54214636 54214636 A T TINAG Missense_Mutation p.N341I 0.17 tolerated(0.12) benign(0.36) TCGA-NC-A5HE-01 6 56417026 56417026 C G DST Missense_Mutation p.G2899R 0.10 probably_damaging(0.988) TCGA-NC-A5HE-01 6 56458518 56458518 T C DST Silent p.R1600R 0.21 TCGA-NC-A5HE-01 6 63990718 63990718 G A LGSN Silent p.G246G 0.15 TCGA-NC-A5HE-01 6 70070811 70070811 C A BAI3 Missense_Mutation p.L1216I 0.10 deleterious(0) probably_damaging(0.932) TCGA-NC-A5HE-01 6 72975206 72975206 G T RIMS1 Missense_Mutation p.S1103I 0.17 deleterious(0.04) possibly_damaging(0.677) TCGA-NC-A5HE-01 6 80634741 80634741 C A ELOVL4 Missense_Mutation p.M99I 0.10 tolerated(0.79) benign(0.006) TCGA-NC-A5HE-01 6 89967453 89967453 G T GABRR2 Missense_Mutation p.S445Y 0.10 deleterious(0) benign(0.424) TCGA-NC-A5HE-01 6 97587133 97587133 C A KLHL32 Missense_Mutation p.P613H 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-NC-A5HE-01 7 122303452 122303452 C A CADPS2 Missense_Mutation p.A209S 0.16 tolerated(0.11) benign(0.022) TCGA-NC-A5HE-01 7 132193185 132193185 C G PLXNA4 Missense_Mutation p.E90Q 0.10 tolerated(0.05) benign(0.15) TCGA-NC-A5HE-01 7 137206653 137206653 T C DGKI Missense_Mutation p.Y736C 0.20 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HE-01 7 141490308 141490308 G A TAS2R5 Silent p.L49L 0.20 TCGA-NC-A5HE-01 7 142176788 142176788 C A TRBV7-4 Translation_Start_Site p.M1? 0.18 deleterious(0) probably_damaging(0.957) TCGA-NC-A5HE-01 7 157370731 157370731 A T PTPRN2 Missense_Mutation p.N866K 0.25 deleterious(0) probably_damaging(0.937) TCGA-NC-A5HE-01 7 42012100 42012100 G A GLI3 Missense_Mutation p.H647Y 0.14 tolerated(0.68) probably_damaging(0.995) TCGA-NC-A5HE-01 7 48319154 48319154 A C ABCA13 Missense_Mutation p.D2788A 0.19 benign(0.122) TCGA-NC-A5HE-01 7 64023338 64023338 C A ZNF680 5'UTR 0.06 TCGA-NC-A5HE-01 7 89982168 89982168 G T GTPBP10 Missense_Mutation p.R24S 0.18 tolerated(0.1) benign(0.134) TCGA-NC-A5HE-01 7 95665023 95665023 C G DYNC1I1 Silent p.G458G 0.14 TCGA-NC-A5HE-01 7 98497301 98497301 G A TRRAP Splice_Site p.X238_splice 0.22 TCGA-NC-A5HE-01 8 120613691 120613691 T C ENPP2 Missense_Mutation p.H282R 0.11 deleterious(0.02) benign(0.138) TCGA-NC-A5HE-01 8 12946068 12946068 C A DLC1 Missense_Mutation p.S1407I 0.16 tolerated(0.06) possibly_damaging(0.904) TCGA-NC-A5HE-01 8 144297225 144297225 C A GPIHBP1 Silent p.T129T 0.11 TCGA-NC-A5HE-01 8 23429083 23429083 C T SLC25A37 Silent p.A244A 0.16 TCGA-NC-A5HE-01 8 61743056 61743056 G T CHD7 Missense_Mutation p.G1233V 0.22 probably_damaging(0.995) TCGA-NC-A5HE-01 8 88885510 88885510 C A DCAF4L2 Missense_Mutation p.Q230H 0.13 deleterious(0) possibly_damaging(0.841) TCGA-NC-A5HE-01 9 101544749 101544749 C A ANKS6 Missense_Mutation p.D407Y 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-NC-A5HE-01 9 101904946 101904946 G T TGFBR1 Missense_Mutation p.G312C 0.15 deleterious(0) probably_damaging(1) TCGA-NC-A5HE-01 9 104130401 104130401 C T BAAT Splice_Site p.X223_splice 0.15 TCGA-NC-A5HE-01 9 116038927 116038927 G T PRPF4 Missense_Mutation p.A44S 0.15 tolerated(0.24) benign(0.004) TCGA-NC-A5HE-01 9 130489342 130489342 C A TTC16 Missense_Mutation p.Q507K 0.15 deleterious(0.03) benign(0.015) TCGA-NC-A5HE-01 9 139994297 139994297 G A MAN1B1 Missense_Mutation p.A294T 0.13 deleterious(0) possibly_damaging(0.896) TCGA-NC-A5HE-01 9 34125210 34125210 G C DCAF12 Nonsense_Mutation p.Y48* 0.17 TCGA-NC-A5HE-01 9 35735337 35735337 C T CREB3 Nonsense_Mutation p.Q193* 0.18 TCGA-NC-A5HE-01 9 97090894 97090894 A G NUTM2F Silent p.N4N 0.08 TCGA-NC-A5HE-01 X 148577874 148577874 T C IDS Intron 0.31 TCGA-NC-A5HE-01 X 150912145 150912145 T C CNGA2 Silent p.D390D 0.42 TCGA-NC-A5HE-01 X 32383217 32383217 C T DMD Missense_Mutation p.V1649M 0.38 possibly_damaging(0.781) TCGA-NC-A5HE-01 X 73046073 73046073 C A XIST RNA 0.11 TCGA-NC-A5HF-01 10 16556493 16556493 C G C1QL3 3'UTR 0.28 TCGA-NC-A5HF-01 10 17645622 17645622 C G PTPLA Silent p.V140V 0.29 TCGA-NC-A5HF-01 10 18885242 18885242 G A NSUN6 Silent p.A224A 0.35 TCGA-NC-A5HF-01 10 26575413 26575413 G T GAD2 Missense_Mutation p.W459L 0.38 deleterious(0) probably_damaging(0.962) TCGA-NC-A5HF-01 10 30638155 30638155 C G MTPAP Missense_Mutation p.R17P 0.37 deleterious_low_confidence(0.01) benign(0.211) TCGA-NC-A5HF-01 10 50532469 50532469 C A C10orf71 Missense_Mutation p.P627T 0.33 tolerated(0.21) benign(0.015) TCGA-NC-A5HF-01 10 88227070 88227070 A G WAPAL Missense_Mutation p.V779A 0.22 deleterious(0) probably_damaging(0.995) TCGA-NC-A5HF-01 10 94708031 94708031 G T EXOC6 Missense_Mutation p.R437S 0.39 deleterious(0.01) benign(0.044) TCGA-NC-A5HF-01 10 99433489 99433489 C T PI4K2A Missense_Mutation p.S447L 0.33 deleterious_low_confidence(0) possibly_damaging(0.792) TCGA-NC-A5HF-01 11 1017233 1017233 G A MUC6 Silent p.I1856I 0.24 TCGA-NC-A5HF-01 11 102221400 102221400 G T BIRC2 Missense_Mutation p.R272L 0.25 deleterious(0) probably_damaging(1) TCGA-NC-A5HF-01 11 104901196 104901196 C A CASP1 Missense_Mutation p.R163L 0.39 deleterious(0) probably_damaging(1) TCGA-NC-A5HF-01 11 105924100 105924100 G A KBTBD3 Missense_Mutation p.P439L 0.38 deleterious(0) possibly_damaging(0.53) TCGA-NC-A5HF-01 11 120838020 120838020 C A GRIK4 Missense_Mutation p.H795N 0.33 tolerated(0.07) probably_damaging(0.995) TCGA-NC-A5HF-01 11 124756913 124756913 C A ROBO4 Missense_Mutation p.A799S 0.40 deleterious(0.02) benign(0.364) TCGA-NC-A5HF-01 11 1272007 1272007 A T MUC5B Missense_Mutation p.S4633C 0.41 unknown(0) TCGA-NC-A5HF-01 11 132016324 132016324 G T NTM Missense_Mutation p.D106Y 0.38 deleterious(0) probably_damaging(0.996) TCGA-NC-A5HF-01 11 132290140 132290140 C A OPCML Missense_Mutation p.A329S 0.24 tolerated(0.73) benign(0.009) TCGA-NC-A5HF-01 11 40137838 40137838 A G LRRC4C Missense_Mutation p.L2S 0.35 deleterious_low_confidence(0) benign(0.094) TCGA-NC-A5HF-01 11 4703144 4703144 G C OR51E2 Missense_Mutation p.S266R 0.45 tolerated(0.29) possibly_damaging(0.479) TCGA-NC-A5HF-01 11 55927097 55927097 C G OR8K5 Missense_Mutation p.G233R 0.40 deleterious_low_confidence(0) probably_damaging(0.909) TCGA-NC-A5HF-01 11 57564347 57564347 A G CTNND1 Missense_Mutation p.Y280C 0.41 deleterious(0) probably_damaging(0.982) TCGA-NC-A5HF-01 11 58714531 58714531 A C GLYATL1 Missense_Mutation p.Q54P 0.10 deleterious(0.01) benign(0.002) TCGA-NC-A5HF-01 11 5878252 5878252 C A OR52E8 Silent p.L227L 0.10 TCGA-NC-A5HF-01 11 59245364 59245364 C A OR4D10 Silent p.V154V 0.32 TCGA-NC-A5HF-01 11 59245365 59245365 C G OR4D10 Missense_Mutation p.H155D 0.32 deleterious(0) probably_damaging(1) TCGA-NC-A5HF-01 11 6129340 6129340 A T OR56B4 Missense_Mutation p.H111L 0.37 deleterious(0) probably_damaging(0.968) TCGA-NC-A5HF-01 11 63072288 63072288 G A SLC22A10 Missense_Mutation p.G509S 0.37 tolerated(0.12) benign(0.173) TCGA-NC-A5HF-01 11 65484260 65484260 C T KAT5 Silent p.I384I 0.04 TCGA-NC-A5HF-01 11 66102087 66102087 C A RIN1 Nonsense_Mutation p.E395* 0.20 TCGA-NC-A5HF-01 11 67790168 67790168 T A ALDH3B1 Missense_Mutation p.I350N 0.40 deleterious(0) possibly_damaging(0.572) TCGA-NC-A5HF-01 11 68125154 68125154 G C LRP5 Silent p.R175R 0.25 TCGA-NC-A5HF-01 11 68341583 68341583 G C PPP6R3 Missense_Mutation p.E450D 0.32 tolerated(0.17) benign(0.124) TCGA-NC-A5HF-01 11 77934519 77934519 G A GAB2 Silent p.P502P 0.38 TCGA-NC-A5HF-01 11 94231211 94231211 G C ANKRD49 Intron 0.60 TCGA-NC-A5HF-01 12 100491232 100491232 C A UHRF1BP1L Missense_Mutation p.A194S 0.30 deleterious(0) probably_damaging(0.965) TCGA-NC-A5HF-01 12 106466608 106466608 C A NUAK1 Missense_Mutation p.G198V 0.29 deleterious(0) probably_damaging(1) TCGA-NC-A5HF-01 12 10766177 10766177 C A MAGOHB 5'UTR 0.33 TCGA-NC-A5HF-01 12 108685614 108685614 A C CMKLR1 3'UTR 0.32 TCGA-NC-A5HF-01 12 109999619 109999619 C A MMAB Silent p.A129A 0.17 TCGA-NC-A5HF-01 12 112610499 112610499 C T HECTD4 Missense_Mutation p.D3775N 0.07 benign(0.421) TCGA-NC-A5HF-01 12 113376428 113376428 C A OAS3 Silent p.R31R 0.29 TCGA-NC-A5HF-01 12 117703196 117703196 G - NOS1 Frame_Shift_Del p.M688Cfs*52 0.26 TCGA-NC-A5HF-01 12 121465428 121465428 G - OASL Frame_Shift_Del p.H284Tfs*47 0.24 TCGA-NC-A5HF-01 12 121987410 121987410 C G KDM2B Missense_Mutation p.E177D 0.30 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HF-01 12 123290773 123290773 C G CCDC62 Silent p.S594S 0.31 TCGA-NC-A5HF-01 12 129373267 129373267 G T GLT1D1 Missense_Mutation p.G101C 0.19 tolerated(0.08) probably_damaging(0.984) TCGA-NC-A5HF-01 12 129558492 129558492 G T TMEM132D Silent p.V1076V 0.32 TCGA-NC-A5HF-01 12 18891956 18891956 C G CAPZA3 Missense_Mutation p.L252V 0.79 deleterious(0.02) probably_damaging(0.947) TCGA-NC-A5HF-01 12 29617486 29617486 A T OVCH1 Missense_Mutation p.F693L 0.62 tolerated(0.2) benign(0.084) TCGA-NC-A5HF-01 12 43822570 43822570 G T ADAMTS20 Silent p.A1174A 0.34 TCGA-NC-A5HF-01 12 43822571 43822571 G T ADAMTS20 Missense_Mutation p.A1174D 0.34 tolerated(0.52) probably_damaging(0.947) TCGA-NC-A5HF-01 12 49165656 49165656 C A ADCY6 Missense_Mutation p.R963L 0.28 tolerated(0.05) benign(0.129) TCGA-NC-A5HF-01 12 49416416 49416416 C A KMT2D Missense_Mutation p.R5432L 0.32 unknown(0) TCGA-NC-A5HF-01 12 49445440 49445440 C A KMT2D Nonsense_Mutation p.E676* 0.31 TCGA-NC-A5HF-01 12 50349268 50349268 G A AQP2 Silent p.S231S 0.39 TCGA-NC-A5HF-01 12 52452648 52452648 A G NR4A1 Missense_Mutation p.I586V 0.40 deleterious(0) probably_damaging(0.942) TCGA-NC-A5HF-01 12 6859376 6859379 TTGG - MLF2 Frame_Shift_Del p.Y121* 0.34 TCGA-NC-A5HF-01 12 72866859 72866859 C T TRHDE Missense_Mutation p.L450F 0.40 deleterious(0) possibly_damaging(0.804) TCGA-NC-A5HF-01 12 78582437 78582437 G A NAV3 Missense_Mutation p.D1957N 0.46 deleterious(0.01) benign(0.046) TCGA-NC-A5HF-01 12 94562982 94562982 C A PLXNC1 Silent p.I372I 0.33 TCGA-NC-A5HF-01 13 33638180 33638180 G A KL Missense_Mutation p.E966K 0.49 tolerated(0.25) benign(0.002) TCGA-NC-A5HF-01 13 43986125 43986125 G T ENOX1 Silent p.P45P 0.38 TCGA-NC-A5HF-01 13 88327658 88327658 C - SLITRK5 Frame_Shift_Del p.P7Qfs*2 0.33 TCGA-NC-A5HF-01 14 105246445 105246445 A C AKT1 Missense_Mutation p.L52R 0.41 deleterious(0) probably_damaging(1) TCGA-NC-A5HF-01 14 20711466 20711466 C A OR11H4 Nonsense_Mutation p.Y172* 0.04 TCGA-NC-A5HF-01 14 24845699 24845699 G T NFATC4 Silent p.T815T 0.32 TCGA-NC-A5HF-01 14 39627564 39627564 G C TRAPPC6B Missense_Mutation p.I64M 0.19 tolerated(0.07) benign(0.361) TCGA-NC-A5HF-01 14 89647101 89647101 C A FOXN3 Silent p.L287L 0.28 TCGA-NC-A5HF-01 14 92958565 92958565 T C SLC24A4 Missense_Mutation p.L566P 0.30 deleterious(0) probably_damaging(0.991) TCGA-NC-A5HF-01 14 94844770 94844770 G C SERPINA1 3'UTR 0.38 TCGA-NC-A5HF-01 15 21071224 21071224 C G POTEB2 Missense_Mutation p.M129I 0.13 tolerated(0.16) benign(0.029) TCGA-NC-A5HF-01 15 25200195 25200195 G T SNURF 5'UTR 0.63 TCGA-NC-A5HF-01 15 48500298 48500298 C T SLC12A1 Nonsense_Mutation p.R128* 0.49 TCGA-NC-A5HF-01 15 50489737 50489737 A T SLC27A2 Missense_Mutation p.K173N 0.62 tolerated(0.2) benign(0.021) TCGA-NC-A5HF-01 15 63433798 63433798 C T LACTB Missense_Mutation p.R480W 0.47 deleterious(0) probably_damaging(0.99) TCGA-NC-A5HF-01 16 16263534 16263534 G A ABCC6 Silent p.G988G 0.46 TCGA-NC-A5HF-01 16 21747654 21747654 G T OTOA Missense_Mutation p.V792F 0.73 deleterious(0.02) probably_damaging(0.958) TCGA-NC-A5HF-01 16 25180465 25180465 G T LCMT1 Missense_Mutation p.M241I 0.69 deleterious(0) probably_damaging(0.995) TCGA-NC-A5HF-01 16 27500469 27500469 C T GTF3C1 Silent p.L1108L 0.67 TCGA-NC-A5HF-01 16 28493469 28493469 C - CLN3 Frame_Shift_Del p.R338Pfs*39 0.20 TCGA-NC-A5HF-01 16 47117362 47117362 T G NETO2 Missense_Mutation p.S450R 0.36 deleterious(0.04) benign(0.043) TCGA-NC-A5HF-01 16 49313494 49313494 C A CBLN1 Missense_Mutation p.G135W 0.37 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HF-01 16 4933750 4933750 G A PPL Silent p.L1636L 0.27 TCGA-NC-A5HF-01 16 69728007 69728007 C G NFAT5 Missense_Mutation p.Q1427E 0.35 benign(0.276) TCGA-NC-A5HF-01 16 71408715 71408715 A G CALB2 Missense_Mutation p.D80G 0.62 deleterious(0.01) possibly_damaging(0.565) TCGA-NC-A5HF-01 16 77896657 77896657 G A VAT1L Missense_Mutation p.A198T 0.32 tolerated(0.69) benign(0.085) TCGA-NC-A5HF-01 16 89655121 89655121 G A CPNE7 Silent p.R397R 0.76 TCGA-NC-A5HF-01 16 9943637 9943637 G C GRIN2A Missense_Mutation p.P435R 0.33 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HF-01 17 25783813 25783813 C T KSR1 Silent p.I48I 0.38 TCGA-NC-A5HF-01 17 46607016 46607016 G T HOXB1 Silent p.R267R 0.57 TCGA-NC-A5HF-01 17 48674146 48674146 C A CACNA1G Silent p.I1040I 0.38 TCGA-NC-A5HF-01 17 57287403 57287403 G T SMG8 5'UTR 0.57 TCGA-NC-A5HF-01 17 59544921 59544921 A T TBX4 Missense_Mutation p.H151L 0.66 deleterious(0) possibly_damaging(0.74) TCGA-NC-A5HF-01 17 7187090 7187090 G A SLC2A4 Silent p.A119A 0.57 TCGA-NC-A5HF-01 17 7247177 7247177 C A ACAP1 Intron 0.58 TCGA-NC-A5HF-01 17 7557383 7557383 T G ATP1B2 Silent p.S120S 0.58 TCGA-NC-A5HF-01 17 7578442 7578442 T C TP53 Missense_Mutation p.Y163C 0.68 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HF-01 17 79911119 79911119 C T NOTUM Silent p.K403K 0.27 TCGA-NC-A5HF-01 18 30257137 30257137 A T KLHL14 Missense_Mutation p.M582K 0.39 tolerated(0.85) benign(0.046) TCGA-NC-A5HF-01 18 31523098 31523098 A G NOL4 Silent p.S491S 0.32 TCGA-NC-A5HF-01 18 72342985 72342985 A C ZNF407 Missense_Mutation p.S4R 0.33 tolerated_low_confidence(0.19) benign(0.003) TCGA-NC-A5HF-01 19 1113574 1113574 T C SBNO2 Missense_Mutation p.E736G 0.31 deleterious(0) benign(0.077) TCGA-NC-A5HF-01 19 11979342 11979342 G T ZNF439 Missense_Mutation p.R486S 0.17 deleterious(0.02) benign(0.094) TCGA-NC-A5HF-01 19 16222720 16222720 G C RAB8A Missense_Mutation p.K3N 0.35 deleterious(0.03) probably_damaging(0.963) TCGA-NC-A5HF-01 19 16268460 16268460 G T HSH2D 3'Flank 0.42 TCGA-NC-A5HF-01 19 16925868 16925868 G T NWD1 3'UTR 0.31 TCGA-NC-A5HF-01 19 1802483 1802483 T C ATP8B3 Intron 0.44 TCGA-NC-A5HF-01 19 18375677 18375677 C T KIAA1683 Silent p.Q891Q 0.35 TCGA-NC-A5HF-01 19 19337307 19337307 C A NCAN Missense_Mutation p.T362K 0.29 deleterious(0) possibly_damaging(0.512) TCGA-NC-A5HF-01 19 33696351 33696351 G A LRP3 Silent p.T225T 0.29 TCGA-NC-A5HF-01 19 38573454 38573454 G T SIPA1L3 Missense_Mutation p.D417Y 0.23 deleterious(0) probably_damaging(0.991) TCGA-NC-A5HF-01 19 38933001 38933001 G C RYR1 Missense_Mutation p.D60H 0.29 probably_damaging(0.999) TCGA-NC-A5HF-01 19 38985208 38985208 C G RYR1 Missense_Mutation p.S2164W 0.25 possibly_damaging(0.838) TCGA-NC-A5HF-01 19 3985395 3985395 G A EEF2 5'UTR 0.32 TCGA-NC-A5HF-01 19 43228160 43228160 G A PSG3 Missense_Mutation p.H421Y 0.37 tolerated(1) benign(0.04) TCGA-NC-A5HF-01 19 47960834 47960834 C T SLC8A2 Silent p.L231L 0.36 TCGA-NC-A5HF-01 19 49797108 49797108 T C SLC6A16 Missense_Mutation p.R532G 0.40 deleterious(0.02) possibly_damaging(0.464) TCGA-NC-A5HF-01 19 51301396 51301396 C A C19orf48 Missense_Mutation p.G104W 0.31 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-NC-A5HF-01 19 51581155 51581155 C A KLK14 3'UTR 0.35 TCGA-NC-A5HF-01 19 51961455 51961455 G A SIGLEC8 Missense_Mutation p.H63Y 0.36 tolerated(0.83) benign(0.027) TCGA-NC-A5HF-01 19 53644360 53644360 C G ZNF347 Missense_Mutation p.C575S 0.30 deleterious(0.01) probably_damaging(1) TCGA-NC-A5HF-01 19 55889175 55889175 G C TMEM190 Missense_Mutation p.V76L 0.22 tolerated(0.2) benign(0.001) TCGA-NC-A5HF-01 19 57286442 57286442 A T ZIM2 Missense_Mutation p.C400S 0.55 tolerated(0.28) benign(0.011) TCGA-NC-A5HF-01 19 6496190 6496190 G A TUBB4A Missense_Mutation p.T107M 0.34 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-NC-A5HF-01 19 9801383 9801383 C A ZNF812 Missense_Mutation p.V266F 0.13 deleterious(0.05) possibly_damaging(0.544) TCGA-NC-A5HF-01 1 103377761 103377761 G T COL11A1 Missense_Mutation p.P1347H 0.22 unknown(0) TCGA-NC-A5HF-01 1 103377762 103377762 G T COL11A1 Missense_Mutation p.P1347T 0.24 unknown(0) TCGA-NC-A5HF-01 1 110086461 110086462 - A GPR61 Frame_Shift_Ins p.T274Dfs*99 0.23 TCGA-NC-A5HF-01 1 112525288 112525288 G T KCND3 Missense_Mutation p.P21T 0.50 deleterious(0) possibly_damaging(0.787) TCGA-NC-A5HF-01 1 1203245 1203245 T A UBE2J2 Missense_Mutation p.E43V 0.42 deleterious(0.02) possibly_damaging(0.777) TCGA-NC-A5HF-01 1 12835060 12835060 T G PRAMEF12 Missense_Mutation p.L17R 0.38 deleterious(0) probably_damaging(0.991) TCGA-NC-A5HF-01 1 149885390 149885390 C G SV2A Translation_Start_Site p.M1? 0.32 deleterious_low_confidence(0) possibly_damaging(0.48) TCGA-NC-A5HF-01 1 151276105 151276105 T A PI4KB Missense_Mutation p.S490C 0.35 deleterious(0.02) probably_damaging(0.944) TCGA-NC-A5HF-01 1 152285392 152285392 G T FLG Missense_Mutation p.S657Y 0.28 probably_damaging(0.997) TCGA-NC-A5HF-01 1 154987482 154987482 G T ZBTB7B Missense_Mutation p.A150S 0.28 tolerated(1) benign(0.226) TCGA-NC-A5HF-01 1 157557268 157557268 C G FCRL4 Missense_Mutation p.Q215H 0.39 tolerated(0.07) benign(0.067) TCGA-NC-A5HF-01 1 157660158 157660158 C A FCRL3 Missense_Mutation p.G526V 0.36 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HF-01 1 158669965 158669965 C A OR6K2 Missense_Mutation p.A160S 0.32 tolerated(0.22) benign(0.133) TCGA-NC-A5HF-01 1 159505732 159505732 C G OR10J5 Missense_Mutation p.K22N 0.25 tolerated(0.09) benign(0.002) TCGA-NC-A5HF-01 1 161594259 161594259 C A FCGR3B 3'UTR 0.25 TCGA-NC-A5HF-01 1 167096359 167096359 C A DUSP27 Missense_Mutation p.S664Y 0.42 deleterious(0.01) possibly_damaging(0.646) TCGA-NC-A5HF-01 1 176564726 176564726 C G PAPPA2 Silent p.P662P 0.28 TCGA-NC-A5HF-01 1 177929958 177929958 G A SEC16B Nonsense_Mutation p.Q302* 0.46 TCGA-NC-A5HF-01 1 179632487 179632487 G T TDRD5 Missense_Mutation p.W837L 0.27 tolerated(0.09) benign(0.03) TCGA-NC-A5HF-01 1 197522130 197522130 T A DENND1B Missense_Mutation p.D421V 0.16 deleterious_low_confidence(0) benign(0.001) TCGA-NC-A5HF-01 1 200017491 200017491 G A NR5A2 Missense_Mutation p.A219T 0.38 tolerated(0.32) benign(0.011) TCGA-NC-A5HF-01 1 200961420 200961420 C G KIF21B Missense_Mutation p.R792P 0.33 deleterious(0) probably_damaging(0.996) TCGA-NC-A5HF-01 1 201009207 201009207 G C CACNA1S Missense_Mutation p.L1792V 0.36 deleterious_low_confidence(0) possibly_damaging(0.5) TCGA-NC-A5HF-01 1 201012638 201012638 G C CACNA1S Missense_Mutation p.Q1607E 0.30 tolerated(0.08) benign(0.066) TCGA-NC-A5HF-01 1 201012639 201012639 G T CACNA1S Silent p.G1606G 0.29 TCGA-NC-A5HF-01 1 210415610 210415610 A G SERTAD4 Silent p.K333K 0.34 TCGA-NC-A5HF-01 1 2121214 2121214 G A C1orf86 Silent p.T159T 0.39 TCGA-NC-A5HF-01 1 223178294 223178294 T C DISP1 Silent p.S1185S 0.30 TCGA-NC-A5HF-01 1 226175835 226175856 GCACATGAGTCTTCTAAAATAT - SDE2 Frame_Shift_Del p.H292Lfs*32 0.28 TCGA-NC-A5HF-01 1 228563725 228563725 A T OBSCN Silent p.T8558T 0.33 TCGA-NC-A5HF-01 1 22915702 22915702 A G EPHA8 Intron 0.30 TCGA-NC-A5HF-01 1 229631314 229631314 T C NUP133 Splice_Site p.X326_splice 0.35 TCGA-NC-A5HF-01 1 230883260 230883260 G T CAPN9 Silent p.R6R 0.44 TCGA-NC-A5HF-01 1 238050124 238050124 A G ZP4 Silent p.T262T 0.13 TCGA-NC-A5HF-01 1 247587481 247587481 G T NLRP3 Missense_Mutation p.G246W 0.36 deleterious(0) probably_damaging(0.991) TCGA-NC-A5HF-01 1 248616879 248616879 G C OR2T2 Missense_Mutation p.V261L 0.27 tolerated(0.11) benign(0.038) TCGA-NC-A5HF-01 1 26384953 26384953 C T TRIM63 Silent p.L253L 0.43 TCGA-NC-A5HF-01 1 34076785 34076785 C A CSMD2 Missense_Mutation p.G2027C 0.42 deleterious(0.01) probably_damaging(0.97) TCGA-NC-A5HF-01 1 34330361 34330361 A G HMGB4 3'UTR 0.39 TCGA-NC-A5HF-01 1 34666435 34666435 C A C1orf94 Missense_Mutation p.P358T 0.34 deleterious_low_confidence(0.04) possibly_damaging(0.732) TCGA-NC-A5HF-01 1 43890801 43890801 G T SZT2 Missense_Mutation p.Q856H 0.25 tolerated(0.14) possibly_damaging(0.693) TCGA-NC-A5HF-01 1 70486786 70486786 G T LRRC7 Missense_Mutation p.D469Y 0.34 deleterious(0) benign(0.394) TCGA-NC-A5HF-01 1 71418534 71418534 A T PTGER3 3'UTR 0.39 TCGA-NC-A5HF-01 1 75038261 75038261 C A C1orf173 Missense_Mutation p.D1045Y 0.36 deleterious(0) probably_damaging(0.935) TCGA-NC-A5HF-01 1 76779529 76779529 C T ST6GALNAC3 Missense_Mutation p.L20F 0.30 benign(0) TCGA-NC-A5HF-01 1 89579813 89579813 C T GBP2 Silent p.T345T 0.32 TCGA-NC-A5HF-01 1 97658680 97658680 G A DPYD Missense_Mutation p.T856I 0.39 tolerated(0.08) benign(0.064) TCGA-NC-A5HF-01 20 1902243 1902243 C A SIRPA Silent p.A213A 0.80 TCGA-NC-A5HF-01 20 35866803 35866803 A T RPN2 Intron 0.19 TCGA-NC-A5HF-01 20 37555005 37555005 G T FAM83D Missense_Mutation p.A4S 0.12 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-NC-A5HF-01 20 46254212 46254212 C T NCOA3 Missense_Mutation p.P115L 0.26 deleterious(0) probably_damaging(1) TCGA-NC-A5HF-01 20 47711367 47711367 G T CSE1L Missense_Mutation p.G898V 0.10 deleterious(0) probably_damaging(0.982) TCGA-NC-A5HF-01 20 60551188 60551188 G A TAF4 3'UTR 0.16 TCGA-NC-A5HF-01 20 60902643 60902643 C T LAMA5 Missense_Mutation p.R1627H 0.13 benign(0.086) TCGA-NC-A5HF-01 20 61143407 61143407 G A C20orf166 5'Flank 0.21 TCGA-NC-A5HF-01 21 10942753 10942753 A G TPTE Missense_Mutation p.Y230H 0.17 deleterious(0.04) probably_damaging(0.976) TCGA-NC-A5HF-01 21 34072193 34072193 G A SYNJ1 Missense_Mutation p.A184V 0.33 deleterious(0.02) possibly_damaging(0.84) TCGA-NC-A5HF-01 21 34932200 34932200 G T SON Intron 0.40 TCGA-NC-A5HF-01 21 46131396 46131396 G C TSPEAR Missense_Mutation p.P12A 0.25 tolerated_low_confidence(1) benign(0) TCGA-NC-A5HF-01 22 20796589 20796589 C T KLHL22 Missense_Mutation p.R559H 0.29 tolerated(0.19) probably_damaging(0.963) TCGA-NC-A5HF-01 22 32614549 32614549 G T SLC5A4 Silent p.A644A 0.26 TCGA-NC-A5HF-01 22 37602842 37602842 C A SSTR3 Missense_Mutation p.R334L 0.45 tolerated(0.09) probably_damaging(0.979) TCGA-NC-A5HF-01 2 103040301 103040301 A T IL18RAP Missense_Mutation p.Y34F 0.43 deleterious(0.01) probably_damaging(0.964) TCGA-NC-A5HF-01 2 108479223 108479223 A G RGPD4 Missense_Mutation p.Y764C 0.58 tolerated(0.13) benign(0.175) TCGA-NC-A5HF-01 2 108489061 108489061 T - RGPD4 Frame_Shift_Del p.S1535Lfs*44 0.10 TCGA-NC-A5HF-01 2 109124126 109124126 A G GCC2 3'UTR 0.32 TCGA-NC-A5HF-01 2 1093885 1093885 A C SNTG2 Silent p.R72R 0.34 TCGA-NC-A5HF-01 2 111416319 111416319 C G BUB1 Missense_Mutation p.G426A 0.42 tolerated(0.69) benign(0.04) TCGA-NC-A5HF-01 2 114699787 114699787 G T ACTR3 Missense_Mutation p.D237Y 0.31 deleterious(0) probably_damaging(0.94) TCGA-NC-A5HF-01 2 120194734 120194734 G T TMEM37 Missense_Mutation p.L97F 0.37 tolerated(0.31) possibly_damaging(0.807) TCGA-NC-A5HF-01 2 125204462 125204462 C A CNTNAP5 Missense_Mutation p.T289K 0.23 deleterious(0.04) probably_damaging(0.952) TCGA-NC-A5HF-01 2 128366358 128366358 G A MYO7B Missense_Mutation p.D907N 0.26 tolerated(0.07) probably_damaging(0.998) TCGA-NC-A5HF-01 2 132241729 132241729 C A MZT2A Nonsense_Mutation p.E128* 0.31 TCGA-NC-A5HF-01 2 141533797 141533797 C G LRP1B Silent p.L1790L 0.32 TCGA-NC-A5HF-01 2 145157271 145157271 A G ZEB2 Missense_Mutation p.C495R 0.45 tolerated(0.47) benign(0.397) TCGA-NC-A5HF-01 2 152550909 152550909 C A NEB Missense_Mutation p.M608I 0.28 benign(0.157) TCGA-NC-A5HF-01 2 163130379 163130379 C A IFIH1 Nonsense_Mutation p.E794* 0.34 TCGA-NC-A5HF-01 2 168099619 168099619 G T XIRP2 Nonsense_Mutation p.E573* 0.31 TCGA-NC-A5HF-01 2 168104834 168104834 C A XIRP2 Missense_Mutation p.P2311H 0.33 probably_damaging(1) TCGA-NC-A5HF-01 2 168105571 168105571 G T XIRP2 Nonsense_Mutation p.E2557* 0.32 TCGA-NC-A5HF-01 2 174230205 174230205 G A CDCA7 Missense_Mutation p.R307H 0.29 tolerated(0.16) benign(0.063) TCGA-NC-A5HF-01 2 177017499 177017499 G T HOXD4 Missense_Mutation p.K199N 0.28 deleterious(0) probably_damaging(1) TCGA-NC-A5HF-01 2 188216966 188216966 C G CALCRL Missense_Mutation p.V335L 0.41 deleterious(0) possibly_damaging(0.759) TCGA-NC-A5HF-01 2 197171278 197171278 C A HECW2 Silent p.L916L 0.28 TCGA-NC-A5HF-01 2 207008739 207008739 T A NDUFS1 Intron 0.54 TCGA-NC-A5HF-01 2 207170359 207170359 C G ZDBF2 Missense_Mutation p.I369M 0.43 deleterious(0.01) benign(0.057) TCGA-NC-A5HF-01 2 210560608 210560608 G C MAP2 Missense_Mutation p.E1238D 0.36 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-NC-A5HF-01 2 21228233 21228233 G A APOB Missense_Mutation p.A3836V 0.27 benign(0.013) TCGA-NC-A5HF-01 2 219029074 219029074 C G CXCR1 Silent p.L287L 0.33 TCGA-NC-A5HF-01 2 220329158 220329158 G T SPEG Silent p.L903L 0.28 TCGA-NC-A5HF-01 2 232457838 232457838 C A C2orf57 Missense_Mutation p.P59H 0.29 deleterious(0.02) probably_damaging(0.979) TCGA-NC-A5HF-01 2 232457839 232457839 C A C2orf57 Silent p.P59P 0.30 TCGA-NC-A5HF-01 2 234365543 234365543 A G DGKD Splice_Site p.X792_splice 0.30 TCGA-NC-A5HF-01 2 235951627 235951627 G C SH3BP4 Silent p.S738S 0.36 TCGA-NC-A5HF-01 2 238271966 238271966 C A COL6A3 Missense_Mutation p.R1998L 0.30 probably_damaging(0.999) TCGA-NC-A5HF-01 2 27800017 27800017 T A C2orf16 Nonsense_Mutation p.L193* 0.30 TCGA-NC-A5HF-01 2 50170910 50170910 A T NRXN1 Missense_Mutation p.V1423E 0.35 deleterious(0.01) benign(0.054) TCGA-NC-A5HF-01 2 7036065 7036065 G T RSAD2 Missense_Mutation p.D360Y 0.21 deleterious(0) probably_damaging(0.928) TCGA-NC-A5HF-01 2 79313572 79313572 C A REG1B Missense_Mutation p.G81V 0.38 tolerated(0.05) probably_damaging(0.996) TCGA-NC-A5HF-01 2 88485461 88485461 C T THNSL2 Missense_Mutation p.P425L 0.28 tolerated(0.06) benign(0.046) TCGA-NC-A5HF-01 2 88874194 88874194 C T EIF2AK3 Missense_Mutation p.R936K 0.32 deleterious(0) probably_damaging(1) TCGA-NC-A5HF-01 2 8926147 8926147 C A KIDINS220 Missense_Mutation p.W651C 0.35 deleterious(0) probably_damaging(0.964) TCGA-NC-A5HF-01 2 9650147 9650147 C T ADAM17 Missense_Mutation p.M435I 0.36 deleterious(0) benign(0.171) TCGA-NC-A5HF-01 3 101284341 101284341 A G TRMT10C Missense_Mutation p.D239G 0.71 deleterious(0) probably_damaging(0.995) TCGA-NC-A5HF-01 3 108754237 108754237 A G MORC1 Missense_Mutation p.F470S 0.31 tolerated(0.06) benign(0) TCGA-NC-A5HF-01 3 113850211 113850211 G A DRD3 Missense_Mutation p.R254C 0.31 tolerated(0.06) benign(0.443) TCGA-NC-A5HF-01 3 126214899 126214899 C G UROC1 Missense_Mutation p.E557D 0.33 tolerated(0.79) probably_damaging(0.997) TCGA-NC-A5HF-01 3 150421678 150421678 T A FAM194A Missense_Mutation p.H3L 0.35 deleterious_low_confidence(0) benign(0.402) TCGA-NC-A5HF-01 3 169485486 169485486 C A ACTRT3 Missense_Mutation p.G285C 0.32 deleterious(0) possibly_damaging(0.65) TCGA-NC-A5HF-01 3 195452920 195452920 C T MUC20 Silent p.S482S 0.42 TCGA-NC-A5HF-01 3 27338702 27338702 G C NEK10 Missense_Mutation p.L400V 0.08 deleterious(0.01) probably_damaging(0.96) TCGA-NC-A5HF-01 3 38141802 38141802 C A DLEC1 Nonsense_Mutation p.S917* 0.61 TCGA-NC-A5HF-01 3 38938377 38938377 C A SCN11A Missense_Mutation p.V788F 0.48 deleterious(0.01) possibly_damaging(0.873) TCGA-NC-A5HF-01 3 45773549 45773549 A G SACM1L Missense_Mutation p.I336V 0.50 tolerated(1) benign(0.002) TCGA-NC-A5HF-01 3 50374744 50374744 C G RASSF1 Intron 0.56 TCGA-NC-A5HF-01 4 103645098 103645098 A G MANBA Missense_Mutation p.L100P 0.73 deleterious(0.04) possibly_damaging(0.808) TCGA-NC-A5HF-01 4 122744747 122744747 C T CCNA2 Missense_Mutation p.E13K 0.31 tolerated_low_confidence(0.05) benign(0.122) TCGA-NC-A5HF-01 4 128584722 128584722 G C INTU Missense_Mutation p.E319Q 0.67 deleterious(0.03) benign(0.049) TCGA-NC-A5HF-01 4 155156978 155156978 G C DCHS2 Silent p.P2487P 0.61 TCGA-NC-A5HF-01 4 515637 515637 G C PIGG Silent p.A507A 0.54 TCGA-NC-A5HF-01 4 66230754 66230754 T C EPHA5 Silent p.L739L 0.54 TCGA-NC-A5HF-01 4 80329249 80329249 G A GK2 Missense_Mutation p.L36F 0.52 deleterious(0.02) benign(0.119) TCGA-NC-A5HF-01 5 101755668 101755668 G A SLCO6A1 Missense_Mutation p.S445F 0.59 deleterious(0.01) probably_damaging(0.959) TCGA-NC-A5HF-01 5 121411130 121411130 T A LOX Nonsense_Mutation p.R283* 0.21 TCGA-NC-A5HF-01 5 1221977 1221977 C A SLC6A19 Missense_Mutation p.S621R 0.60 deleterious(0.05) benign(0.197) TCGA-NC-A5HF-01 5 1244345 1244345 C A SLC6A18 Silent p.V451V 0.48 TCGA-NC-A5HF-01 5 13717571 13717571 G A DNAH5 Silent p.Y4186Y 0.07 TCGA-NC-A5HF-01 5 13717606 13717606 C G DNAH5 Missense_Mutation p.V4175L 0.69 benign(0.442) TCGA-NC-A5HF-01 5 140594874 140594874 C A PCDHB13 Silent p.L393L 0.65 TCGA-NC-A5HF-01 5 140723685 140723685 G T PCDHGA3 Missense_Mutation p.G29C 0.54 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-NC-A5HF-01 5 140769023 140769023 C G PCDHGB4 Silent p.R524R 0.50 TCGA-NC-A5HF-01 5 140811628 140811628 G C PCDHGA12 Silent p.T434T 0.65 TCGA-NC-A5HF-01 5 140811629 140811629 G T PCDHGA12 Nonsense_Mutation p.E435* 0.66 TCGA-NC-A5HF-01 5 156381499 156381499 C G TIMD4 Silent p.V109V 0.49 TCGA-NC-A5HF-01 5 161531031 161531031 C A GABRG2 Silent p.S296S 0.36 TCGA-NC-A5HF-01 5 169028580 169028580 G C SPDL1 Missense_Mutation p.D541H 0.31 deleterious(0) possibly_damaging(0.83) TCGA-NC-A5HF-01 5 3601097 3601097 C A IRX1 Missense_Mutation p.N462K 0.17 tolerated(0.06) benign(0.034) TCGA-NC-A5HF-01 5 5187879 5187879 C G ADAMTS16 Missense_Mutation p.I335M 0.68 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HF-01 6 11105055 11105055 G T ERVFRD-1 Missense_Mutation p.H163Q 0.32 tolerated(0.3) benign(0.175) TCGA-NC-A5HF-01 6 111288812 111288812 C T GTF3C6 Missense_Mutation p.A154V 0.27 tolerated(0.11) benign(0.011) TCGA-NC-A5HF-01 6 131973973 131973973 G C ENPP3 Missense_Mutation p.E136Q 0.15 deleterious(0.03) possibly_damaging(0.864) TCGA-NC-A5HF-01 6 13307906 13307906 C T TBC1D7 Silent p.A197A 0.35 TCGA-NC-A5HF-01 6 144179072 144179072 G C LTV1 Silent p.T241T 0.36 TCGA-NC-A5HF-01 6 147124763 147124763 T A ADGB Intron 0.29 TCGA-NC-A5HF-01 6 152712595 152712595 G C SYNE1 Missense_Mutation p.N2607K 0.27 benign(0.104) TCGA-NC-A5HF-01 6 158567932 158567932 T C SERAC1 Silent p.T123T 0.35 TCGA-NC-A5HF-01 6 163149233 163149233 A T PACRG 5'UTR 0.38 TCGA-NC-A5HF-01 6 170627219 170627219 A G FAM120B Silent p.L247L 0.33 TCGA-NC-A5HF-01 6 28543192 28543192 T C SCAND3 Silent p.A430A 0.24 TCGA-NC-A5HF-01 6 35262254 35262254 G T ZNF76 Missense_Mutation p.A506S 0.24 tolerated(0.09) benign(0.063) TCGA-NC-A5HF-01 6 36068001 36068001 G T MAPK14 Missense_Mutation p.G240V 0.25 deleterious(0) probably_damaging(1) TCGA-NC-A5HF-01 6 50805796 50805796 C T TFAP2B Silent p.S310S 0.36 TCGA-NC-A5HF-01 6 51732802 51732802 A T PKHD1 Missense_Mutation p.L2531Q 0.30 deleterious(0) probably_damaging(0.968) TCGA-NC-A5HF-01 6 54806767 54806768 - T FAM83B Frame_Shift_Ins p.M1000Ifs*12 0.18 TCGA-NC-A5HF-01 6 56327869 56327869 G C DST Nonsense_Mutation p.S5035* 0.40 TCGA-NC-A5HF-01 6 70672719 70672719 G A COL19A1 Missense_Mutation p.G328E 0.33 deleterious(0) unknown(0) TCGA-NC-A5HF-01 6 75827241 75827241 C A COL12A1 Missense_Mutation p.G2459V 0.31 probably_damaging(1) TCGA-NC-A5HF-01 6 87725347 87725347 C A HTR1E Missense_Mutation p.L99M 0.39 deleterious(0) probably_damaging(1) TCGA-NC-A5HF-01 6 88391374 88391374 G A AKIRIN2 Missense_Mutation p.P115S 0.39 tolerated(0.34) benign(0.021) TCGA-NC-A5HF-01 6 90440643 90440643 C T MDN1 Splice_Site p.X1648_splice 0.29 TCGA-NC-A5HF-01 6 94129032 94129032 A G EPHA7 Missense_Mutation p.W10R 0.38 tolerated(0.27) possibly_damaging(0.601) TCGA-NC-A5HF-01 7 100355822 100355822 C A ZAN Intron 0.34 TCGA-NC-A5HF-01 7 104546740 104546740 C G LHFPL3 3'UTR 0.36 TCGA-NC-A5HF-01 7 104714083 104714083 G - KMT2E Frame_Shift_Del p.A173Qfs*43 0.20 TCGA-NC-A5HF-01 7 123197490 123197491 - A NDUFA5 Frame_Shift_Ins p.V12Cfs*22 0.20 TCGA-NC-A5HF-01 7 137092621 137092621 C A DGKI Nonsense_Mutation p.G982* 0.29 TCGA-NC-A5HF-01 7 140259509 140259509 T A DENND2A Missense_Mutation p.S630C 0.08 deleterious(0) probably_damaging(1) TCGA-NC-A5HF-01 7 147844714 147844714 C T CNTNAP2 Silent p.L896L 0.28 TCGA-NC-A5HF-01 7 150324678 150324678 C A GIMAP6 3'UTR 0.35 TCGA-NC-A5HF-01 7 150324679 150324679 C A GIMAP6 3'UTR 0.35 TCGA-NC-A5HF-01 7 154684586 154684586 C A DPP6 3'UTR 0.30 TCGA-NC-A5HF-01 7 29963480 29963480 T C SCRN1 3'UTR 0.52 TCGA-NC-A5HF-01 7 45217039 45217039 G A RAMP3 Missense_Mutation p.V64M 0.33 tolerated(0.31) benign(0.053) TCGA-NC-A5HF-01 7 55910790 55910790 G T SEPT14 Missense_Mutation p.Q135K 0.43 deleterious(0.04) probably_damaging(0.999) TCGA-NC-A5HF-01 7 64863579 64863579 G T ZNF92 Missense_Mutation p.M184I 0.24 tolerated(0.17) benign(0.004) TCGA-NC-A5HF-01 7 77797327 77797327 G A MAGI2 Silent p.A834A 0.38 TCGA-NC-A5HF-01 7 82595151 82595151 T C PCLO Missense_Mutation p.K1318R 0.48 unknown(0) TCGA-NC-A5HF-01 7 87400049 87400049 T A RUNDC3B Missense_Mutation p.L278H 0.24 deleterious(0) possibly_damaging(0.469) TCGA-NC-A5HF-01 7 96650265 96650266 - C DLX5 Frame_Shift_Ins p.P218Rfs*95 0.26 TCGA-NC-A5HF-01 7 99769040 99769040 C T GPC2 Missense_Mutation p.G444R 0.33 deleterious(0) probably_damaging(0.946) TCGA-NC-A5HF-01 8 103563895 103563895 A G ODF1 5'UTR 0.27 TCGA-NC-A5HF-01 8 10480455 10480455 C - RP1L1 Frame_Shift_Del p.G86Afs*71 0.41 TCGA-NC-A5HF-01 8 110984994 110984994 T A KCNV1 Missense_Mutation p.S162C 0.49 tolerated(0.05) possibly_damaging(0.57) TCGA-NC-A5HF-01 8 145007150 145007150 C G PLEC Missense_Mutation p.E653D 0.41 unknown(0) TCGA-NC-A5HF-01 8 22012935 22012935 G A LGI3 Missense_Mutation p.A83V 0.38 tolerated(0.16) probably_damaging(0.921) TCGA-NC-A5HF-01 8 3047608 3047608 T A CSMD1 Missense_Mutation p.S1742C 0.47 probably_damaging(0.999) TCGA-NC-A5HF-01 8 42587267 42587267 G T CHRNB3 Missense_Mutation p.V273F 0.54 deleterious(0) probably_damaging(1) TCGA-NC-A5HF-01 8 55539894 55539894 A G RP1 Missense_Mutation p.H1151R 0.25 tolerated(0.08) benign(0.391) TCGA-NC-A5HF-01 8 67547268 67547268 C A VCPIP1 Missense_Mutation p.R1046M 0.46 deleterious_low_confidence(0) benign(0.016) TCGA-NC-A5HF-01 8 87567189 87567189 G A CPNE3 Missense_Mutation p.A411T 0.26 tolerated(0.09) probably_damaging(1) TCGA-NC-A5HF-01 8 89128775 89128775 G C MMP16 Missense_Mutation p.N348K 0.61 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HF-01 9 108370201 108370201 G T FKTN Missense_Mutation p.C250F 0.54 deleterious(0) probably_damaging(1) TCGA-NC-A5HF-01 9 110248003 110248003 C T KLF4 3'UTR 0.05 TCGA-NC-A5HF-01 9 124922060 124922060 C T NDUFA8 5'UTR 0.63 TCGA-NC-A5HF-01 X 109919565 109919565 C A CHRDL1 Missense_Mutation p.G424V 0.72 deleterious(0.01) possibly_damaging(0.89) TCGA-NC-A5HF-01 X 111698651 111698651 T G ZCCHC16 Missense_Mutation p.L232R 0.59 tolerated(0.14) benign(0.329) TCGA-NC-A5HF-01 X 153593520 153593520 G C FLNA Missense_Mutation p.Q559E 0.68 tolerated(0.33) benign(0.127) TCGA-NC-A5HF-01 X 153693829 153693829 A T PLXNA3 Silent p.G769G 0.75 TCGA-NC-A5HF-01 X 20033423 20033423 G C MAP7D2 Missense_Mutation p.A556G 0.79 deleterious(0.02) unknown(0) TCGA-NC-A5HF-01 X 20033428 20033428 T G MAP7D2 Silent p.T554T 0.80 TCGA-NC-A5HF-01 X 74291430 74291430 A T ABCB7 Missense_Mutation p.L375Q 0.76 deleterious(0) probably_damaging(1) TCGA-NC-A5HF-01 X 79698580 79698580 A T FAM46D Missense_Mutation p.D181V 0.68 deleterious(0) possibly_damaging(0.827) TCGA-NC-A5HG-01 10 104622779 104622779 C T C10orf32 3'UTR 0.44 TCGA-NC-A5HG-01 10 107022245 107022245 C A SORCS3 Silent p.V1200V 0.38 TCGA-NC-A5HG-01 10 115922449 115922449 C T C10orf118 Silent p.L193L 0.24 TCGA-NC-A5HG-01 10 124358343 124358343 G T DMBT1 Missense_Mutation p.G1004C 0.02 deleterious(0) probably_damaging(1) TCGA-NC-A5HG-01 10 124897122 124897122 G C HMX3 Missense_Mutation p.E317Q 0.46 tolerated(0.08) possibly_damaging(0.737) TCGA-NC-A5HG-01 10 127442320 127442320 G C EDRF1 Missense_Mutation p.E1151Q 0.26 tolerated(0.05) probably_damaging(0.947) TCGA-NC-A5HG-01 10 129350737 129350737 C A NPS Missense_Mutation p.S35Y 0.41 tolerated(0.22) possibly_damaging(0.847) TCGA-NC-A5HG-01 10 13237141 13237141 C T MCM10 Silent p.L617L 0.37 TCGA-NC-A5HG-01 10 134166421 134166421 C T LRRC27 Intron 0.30 TCGA-NC-A5HG-01 10 17088049 17088049 C A CUBN Missense_Mutation p.G1125V 0.43 deleterious(0) probably_damaging(1) TCGA-NC-A5HG-01 10 18254489 18254489 G A SLC39A12 Silent p.Q207Q 0.43 TCGA-NC-A5HG-01 10 20290883 20290883 G A PLXDC2 Missense_Mutation p.D98N 0.36 tolerated(0.11) benign(0.021) TCGA-NC-A5HG-01 10 21120504 21120504 A G NEBL Silent p.Y486Y 0.47 TCGA-NC-A5HG-01 10 25313331 25313331 A C THNSL1 Silent p.L393L 0.13 TCGA-NC-A5HG-01 10 25877956 25877956 T C GPR158 Missense_Mutation p.W592R 0.15 deleterious(0.01) benign(0.164) TCGA-NC-A5HG-01 10 27409453 27409453 A C YME1L1 Missense_Mutation p.F498C 0.50 deleterious(0) probably_damaging(0.979) TCGA-NC-A5HG-01 10 43659404 43659404 C A CSGALNACT2 Missense_Mutation p.D357E 0.36 tolerated(0.29) benign(0.003) TCGA-NC-A5HG-01 10 45430362 45430362 A T TMEM72 Missense_Mutation p.N203I 0.37 tolerated(0.07) benign(0.071) TCGA-NC-A5HG-01 10 49409392 49409392 C T FRMPD2 Silent p.G611G 0.36 TCGA-NC-A5HG-01 10 54074237 54074237 G C DKK1 Missense_Mutation p.A15P 0.07 deleterious(0.02) benign(0.371) TCGA-NC-A5HG-01 10 55943277 55943277 G C PCDH15 Missense_Mutation p.T506R 0.43 deleterious(0.01) probably_damaging(0.957) TCGA-NC-A5HG-01 10 73115866 73115866 C G SLC29A3 Silent p.A213A 0.39 TCGA-NC-A5HG-01 10 73921378 73921378 T G ASCC1 Missense_Mutation p.I210L 0.39 tolerated(0.41) benign(0.387) TCGA-NC-A5HG-01 10 73970585 73970585 G T ASCC1 Silent p.S39S 0.08 TCGA-NC-A5HG-01 10 75434884 75434884 G A AGAP5 Missense_Mutation p.R512C 0.36 deleterious(0) possibly_damaging(0.766) TCGA-NC-A5HG-01 10 75560428 75560428 G A ZSWIM8 Missense_Mutation p.R1686Q 0.38 deleterious(0) possibly_damaging(0.776) TCGA-NC-A5HG-01 10 7618855 7618855 G A ITIH5 Silent p.I513I 0.44 TCGA-NC-A5HG-01 10 91528083 91528083 C T KIF20B Missense_Mutation p.P1636S 0.26 tolerated(0.2) probably_damaging(0.988) TCGA-NC-A5HG-01 10 93788559 93788559 G T BTAF1 Nonsense_Mutation p.E1807* 0.11 TCGA-NC-A5HG-01 10 94669318 94669318 C G EXOC6 Missense_Mutation p.S198C 0.41 deleterious(0) probably_damaging(0.928) TCGA-NC-A5HG-01 10 96748749 96748749 G C CYP2C9 Silent p.V479V 0.07 TCGA-NC-A5HG-01 10 97918246 97918246 G C ZNF518A RNA 0.07 TCGA-NC-A5HG-01 10 98711871 98711871 G C LCOR Missense_Mutation p.D84H 0.22 deleterious(0) possibly_damaging(0.907) TCGA-NC-A5HG-01 10 98807485 98807485 G C SLIT1 Silent p.T532T 0.45 TCGA-NC-A5HG-01 10 99226307 99226307 C A MMS19 Missense_Mutation p.G487C 0.35 deleterious(0.01) possibly_damaging(0.447) TCGA-NC-A5HG-01 11 104822658 104822658 C T CASP4 Missense_Mutation p.E113K 0.60 tolerated(0.34) benign(0.003) TCGA-NC-A5HG-01 11 106681104 106681104 C A GUCY1A2 Missense_Mutation p.R436L 0.77 deleterious(0) probably_damaging(0.971) TCGA-NC-A5HG-01 11 118344768 118344768 G A KMT2A Missense_Mutation p.G965E 0.80 possibly_damaging(0.651) TCGA-NC-A5HG-01 11 1214031 1214031 G T MUC5AC RNA 0.75 TCGA-NC-A5HG-01 11 122671935 122671935 C A UBASH3B Missense_Mutation p.P497H 0.70 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HG-01 11 122953827 122953827 C T CLMP Silent p.G215G 0.17 TCGA-NC-A5HG-01 11 122968571 122968571 C T CLMP Missense_Mutation p.G40R 0.67 tolerated(0.09) probably_damaging(0.995) TCGA-NC-A5HG-01 11 123886933 123886933 G A OR10G4 Missense_Mutation p.V218M 0.77 tolerated(0.09) benign(0.394) TCGA-NC-A5HG-01 11 125616226 125616226 C T PATE1 Silent p.L9L 0.58 TCGA-NC-A5HG-01 11 18793573 18793573 G T PTPN5 5'UTR 0.70 TCGA-NC-A5HG-01 11 26584662 26584662 C - MUC15 Splice_Site p.X309_splice 0.39 TCGA-NC-A5HG-01 11 30902829 30902829 G C DCDC1 Silent p.L1700L 0.70 TCGA-NC-A5HG-01 11 33772163 33772163 G T FBXO3 Missense_Mutation p.T285N 0.11 deleterious(0.01) possibly_damaging(0.759) TCGA-NC-A5HG-01 11 4388766 4388766 A T OR52B4 Missense_Mutation p.Y254N 0.68 deleterious(0) probably_damaging(0.994) TCGA-NC-A5HG-01 11 46837808 46837808 C T CKAP5 Silent p.L133L 0.04 TCGA-NC-A5HG-01 11 46900561 46900561 G A LRP4 Silent p.G1011G 0.04 TCGA-NC-A5HG-01 11 48327992 48327992 C G OR4S1 Missense_Mutation p.S73C 0.71 deleterious(0) possibly_damaging(0.541) TCGA-NC-A5HG-01 11 5009507 5009507 T A MMP26 Silent p.P22P 0.72 TCGA-NC-A5HG-01 11 5322267 5322267 A G OR51B4 Missense_Mutation p.F304L 0.74 tolerated(0.14) benign(0.02) TCGA-NC-A5HG-01 11 5529854 5529854 C G UBQLN3 Missense_Mutation p.G312A 0.69 tolerated(0.16) benign(0.156) TCGA-NC-A5HG-01 11 55322394 55322394 G A OR4C15 Silent p.G204G 0.64 TCGA-NC-A5HG-01 11 55579755 55579755 C A OR5L1 Missense_Mutation p.D271E 0.72 tolerated(0.12) benign(0.248) TCGA-NC-A5HG-01 11 55761967 55761967 C T OR5F1 Missense_Mutation p.M45I 0.76 tolerated(0.13) benign(0.437) TCGA-NC-A5HG-01 11 57958382 57958382 C T OR9Q2 Silent p.A140A 0.25 TCGA-NC-A5HG-01 11 58170798 58170798 A T OR5B3 Missense_Mutation p.F29I 0.33 tolerated_low_confidence(0.07) benign(0.049) TCGA-NC-A5HG-01 11 608347 608347 C A PHRF1 Missense_Mutation p.T963N 0.20 tolerated(0.28) possibly_damaging(0.846) TCGA-NC-A5HG-01 11 62382365 62382365 C T ROM1 3'UTR 0.30 TCGA-NC-A5HG-01 11 62383272 62383272 C T B3GAT3 Splice_Site p.X304_splice 0.18 TCGA-NC-A5HG-01 11 62489702 62489702 G A HNRNPUL2 Nonsense_Mutation p.Q416* 0.38 TCGA-NC-A5HG-01 11 6415797 6415797 C T SMPD1 Missense_Mutation p.P619L 0.68 tolerated(0.37) benign(0.004) TCGA-NC-A5HG-01 11 65265807 65265807 G A MALAT1 RNA 0.46 TCGA-NC-A5HG-01 11 65648900 65648900 C G CTSW Missense_Mutation p.I65M 0.43 deleterious(0) probably_damaging(1) TCGA-NC-A5HG-01 11 65650927 65650927 G A CTSW Intron 0.28 TCGA-NC-A5HG-01 11 66010420 66010420 G C PACS1 Missense_Mutation p.K898N 0.15 deleterious(0) probably_damaging(0.968) TCGA-NC-A5HG-01 11 66133415 66133415 A G SLC29A2 Missense_Mutation p.F351L 0.09 tolerated(0.56) benign(0.015) TCGA-NC-A5HG-01 11 67402481 67402481 G A TBX10 Silent p.V87V 0.11 TCGA-NC-A5HG-01 11 68029241 68029241 G A C11orf24 Missense_Mutation p.L408F 0.16 tolerated(0.08) probably_damaging(0.934) TCGA-NC-A5HG-01 11 68029638 68029638 G A C11orf24 Silent p.P275P 0.16 TCGA-NC-A5HG-01 11 68540801 68540801 T C CPT1A Missense_Mutation p.I558V 0.27 deleterious(0.04) benign(0.009) TCGA-NC-A5HG-01 11 691546 691546 G A DEAF1 Silent p.F114F 0.55 TCGA-NC-A5HG-01 11 71249280 71249280 G A KRTAP5-8 Missense_Mutation p.R60H 0.02 tolerated_low_confidence(0.1) unknown(0) TCGA-NC-A5HG-01 11 71249302 71249302 G A KRTAP5-8 Silent p.K67K 0.07 TCGA-NC-A5HG-01 11 74056674 74056674 G TT PGM2L1 Frame_Shift_Ins p.T353Kfs*4 0.24 TCGA-NC-A5HG-01 11 74079620 74079620 G C PGM2L1 Missense_Mutation p.P158A 0.08 tolerated(0.07) probably_damaging(1) TCGA-NC-A5HG-01 11 76372544 76372544 C T LRRC32 Silent p.K31K 0.60 TCGA-NC-A5HG-01 11 78285396 78285396 G A NARS2 Silent p.I46I 0.25 TCGA-NC-A5HG-01 11 85576196 85576196 G A CCDC83 Silent p.K10K 0.05 TCGA-NC-A5HG-01 11 86778741 86778741 A T TMEM135 Silent p.A49A 0.26 TCGA-NC-A5HG-01 11 89916161 89916161 G C NAALAD2 Missense_Mutation p.G673A 0.56 deleterious(0.01) probably_damaging(0.933) TCGA-NC-A5HG-01 11 95561173 95561173 A G CEP57 Missense_Mutation p.E370G 0.81 deleterious(0) probably_damaging(0.988) TCGA-NC-A5HG-01 12 100957332 100957332 C T NR1H4 3'Flank 0.39 TCGA-NC-A5HG-01 12 101016053 101016053 G C GAS2L3 Missense_Mutation p.V217L 0.39 deleterious(0) possibly_damaging(0.854) TCGA-NC-A5HG-01 12 103696041 103696041 C T C12orf42 Missense_Mutation p.A310T 0.30 deleterious(0.05) possibly_damaging(0.448) TCGA-NC-A5HG-01 12 104373621 104373621 G C TDG Missense_Mutation p.G60A 0.08 tolerated_low_confidence(0.29) benign(0.077) TCGA-NC-A5HG-01 12 104707031 104707031 C T TXNRD1 Silent p.A182A 0.40 TCGA-NC-A5HG-01 12 108004081 108004081 G A BTBD11 Silent p.K586K 0.05 TCGA-NC-A5HG-01 12 109290815 109290815 A C DAO Missense_Mutation p.T216P 0.13 deleterious(0.01) probably_damaging(0.995) TCGA-NC-A5HG-01 12 109290816 109290816 C T DAO Missense_Mutation p.T216I 0.13 deleterious(0) probably_damaging(0.988) TCGA-NC-A5HG-01 12 109994883 109994883 C G MMAB Missense_Mutation p.E235Q 0.10 deleterious(0) probably_damaging(0.974) TCGA-NC-A5HG-01 12 110345418 110345418 G A TCHP Missense_Mutation p.E205K 0.44 tolerated(0.22) probably_damaging(0.993) TCGA-NC-A5HG-01 12 111758105 111758105 C T CUX2 Silent p.P764P 0.34 TCGA-NC-A5HG-01 12 113496183 113496183 G A DTX1 Silent p.L62L 0.36 TCGA-NC-A5HG-01 12 120159172 120159172 C A CIT Missense_Mutation p.R1225L 0.33 deleterious(0.02) benign(0.254) TCGA-NC-A5HG-01 12 121432097 121432097 G A HNF1A Missense_Mutation p.A282T 0.40 deleterious(0.03) probably_damaging(0.992) TCGA-NC-A5HG-01 12 122958473 122958473 G A ZCCHC8 Silent p.L565L 0.19 TCGA-NC-A5HG-01 12 123342747 123342747 C T HIP1R Silent p.A638A 0.29 TCGA-NC-A5HG-01 12 12397202 12397202 G A LRP6 Missense_Mutation p.S148L 0.14 tolerated(0.27) benign(0.001) TCGA-NC-A5HG-01 12 131487797 131487797 T A GPR133 Missense_Mutation p.L365Q 0.41 deleterious(0) probably_damaging(0.98) TCGA-NC-A5HG-01 12 132394493 132394493 G T ULK1 Missense_Mutation p.R252L 0.48 deleterious(0.01) probably_damaging(0.983) TCGA-NC-A5HG-01 12 21467547 21467547 T C SLCO1A2 Missense_Mutation p.I91V 0.39 tolerated(1) benign(0.001) TCGA-NC-A5HG-01 12 26639036 26639036 C T ITPR2 Splice_Site p.X1937_splice 0.32 TCGA-NC-A5HG-01 12 38710764 38710764 C A ALG10B Silent p.L23L 0.43 TCGA-NC-A5HG-01 12 45173686 45173686 T A NELL2 Missense_Mutation p.K202M 0.44 deleterious(0) possibly_damaging(0.78) TCGA-NC-A5HG-01 12 46322685 46322685 T C SCAF11 Intron 0.50 TCGA-NC-A5HG-01 12 49431959 49431959 C T KMT2D Silent p.G3060G 0.11 TCGA-NC-A5HG-01 12 49433759 49433784 GCTGCTGGGCCCCAGGGGGCTGCCCG - KMT2D Frame_Shift_Del p.S2590Wfs*56 0.28 TCGA-NC-A5HG-01 12 50052227 50052227 G A FMNL3 Silent p.L201L 0.30 TCGA-NC-A5HG-01 12 50536897 50536897 G A CERS5 Nonsense_Mutation p.Q132* 0.45 TCGA-NC-A5HG-01 12 5154504 5154504 C T KCNA5 Silent p.A397A 0.42 TCGA-NC-A5HG-01 12 5154609 5154609 G A KCNA5 Silent p.R432R 0.23 TCGA-NC-A5HG-01 12 53876431 53876431 G A MAP3K12 Missense_Mutation p.S719L 0.17 tolerated_low_confidence(0.25) benign(0) TCGA-NC-A5HG-01 12 53879224 53879224 G A MAP3K12 Missense_Mutation p.S286L 0.19 deleterious(0) probably_damaging(0.979) TCGA-NC-A5HG-01 12 56221560 56221560 T A DNAJC14 Missense_Mutation p.T295S 0.43 tolerated(0.31) benign(0.001) TCGA-NC-A5HG-01 12 56365452 56365452 C T CDK2 3'UTR 0.32 TCGA-NC-A5HG-01 12 56495699 56495699 G A ERBB3 Missense_Mutation p.G1297R 0.22 tolerated(0.09) benign(0.055) TCGA-NC-A5HG-01 12 56510576 56510576 G C RPL41 Missense_Mutation p.R2T 0.18 unknown(0) TCGA-NC-A5HG-01 12 57039704 57039704 C A ATP5B Missense_Mutation p.G15V 0.26 deleterious_low_confidence(0.04) benign(0.017) TCGA-NC-A5HG-01 12 57993199 57993199 G T PIP4K2C Missense_Mutation p.R226L 0.49 deleterious(0) possibly_damaging(0.854) TCGA-NC-A5HG-01 12 58000799 58000799 T G DTX3 Missense_Mutation p.D51E 0.44 tolerated(0.48) possibly_damaging(0.739) TCGA-NC-A5HG-01 12 70133491 70133491 G T RAB3IP 5'UTR 0.38 TCGA-NC-A5HG-01 12 70938440 70938440 G C PTPRB Missense_Mutation p.I1797M 0.16 deleterious(0.01) probably_damaging(0.953) TCGA-NC-A5HG-01 12 7286290 7286290 G A CLSTN3 Silent p.K103K 0.34 TCGA-NC-A5HG-01 12 75444927 75444927 T G KCNC2 Missense_Mutation p.E286D 0.42 tolerated(0.08) probably_damaging(0.966) TCGA-NC-A5HG-01 12 7651732 7651732 T A CD163 Silent p.G170G 0.45 TCGA-NC-A5HG-01 12 82792573 82792573 G A METTL25 Splice_Site p.X178_splice 0.44 TCGA-NC-A5HG-01 12 8290960 8290960 A C CLEC4A 3'UTR 0.38 TCGA-NC-A5HG-01 12 9010630 9010630 A T A2ML1 Missense_Mutation p.M1066L 0.05 tolerated(1) benign(0.002) TCGA-NC-A5HG-01 12 9221399 9221399 G A A2M Nonsense_Mutation p.Q1435* 0.17 TCGA-NC-A5HG-01 12 96386569 96386569 G A HAL Silent p.L202L 0.04 TCGA-NC-A5HG-01 12 98850545 98850545 T A SLC9A7P1 RNA 0.32 TCGA-NC-A5HG-01 12 989887 989887 G T WNK1 Missense_Mutation p.G945C 0.08 deleterious(0) probably_damaging(1) TCGA-NC-A5HG-01 12 99007688 99007688 T C IKBIP Missense_Mutation p.K243R 0.26 tolerated(0.45) benign(0.004) TCGA-NC-A5HG-01 13 103510675 103510675 C A BIVM-ERCC5 Missense_Mutation p.F619L 0.69 deleterious(0) probably_damaging(0.916) TCGA-NC-A5HG-01 13 108882465 108882465 A G ABHD13 Missense_Mutation p.D300G 0.71 tolerated(0.08) benign(0.117) TCGA-NC-A5HG-01 13 25000660 25000660 T C PARP4 Silent p.E1641E 0.81 TCGA-NC-A5HG-01 13 26978228 26978228 G C CDK8 3'UTR 0.79 TCGA-NC-A5HG-01 13 32527238 32527238 G T EEF1DP3 RNA 0.71 TCGA-NC-A5HG-01 13 32783190 32783190 G C FRY Missense_Mutation p.G1407R 0.08 deleterious(0) probably_damaging(1) TCGA-NC-A5HG-01 13 32944607 32944607 T C BRCA2 Silent p.P2800P 0.05 TCGA-NC-A5HG-01 13 35622700 35622700 G A NBEA Missense_Mutation p.A242T 0.73 deleterious(0.05) possibly_damaging(0.595) TCGA-NC-A5HG-01 13 38237811 38237811 G C TRPC4 Missense_Mutation p.A477G 0.81 deleterious(0.02) benign(0.106) TCGA-NC-A5HG-01 13 42461365 42461365 G A VWA8 Nonsense_Mutation p.Q262* 0.75 TCGA-NC-A5HG-01 13 47345566 47345566 T C ESD Silent p.K278K 0.83 TCGA-NC-A5HG-01 13 58298748 58298748 C T PCDH17 Missense_Mutation p.P934S 0.25 tolerated(0.48) benign(0.017) TCGA-NC-A5HG-01 13 84454675 84454675 G A SLITRK1 Missense_Mutation p.A323V 0.71 tolerated(0.22) benign(0.021) TCGA-NC-A5HG-01 13 92560211 92560211 G T GPC5 Missense_Mutation p.G434V 0.58 deleterious(0.01) probably_damaging(0.999) TCGA-NC-A5HG-01 14 100820880 100820880 G A WARS Missense_Mutation p.A149V 0.09 tolerated(0.33) benign(0.003) TCGA-NC-A5HG-01 14 101318800 101318800 G T MIR770 RNA 0.44 TCGA-NC-A5HG-01 14 105395233 105395233 G A PLD4 Silent p.G144G 0.32 TCGA-NC-A5HG-01 14 105413589 105413589 C T AHNAK2 Silent p.K2733K 0.43 TCGA-NC-A5HG-01 14 105452789 105452789 G - C14orf79 Frame_Shift_Del p.G9Efs*4 0.11 TCGA-NC-A5HG-01 14 105518102 105518102 G A GPR132 Silent p.C124C 0.35 TCGA-NC-A5HG-01 14 106174248 106174248 C T IGHA1 Missense_Mutation p.G181S 0.27 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HG-01 14 106805330 106805330 G T IGHV4-31 Missense_Mutation p.T78N 0.63 deleterious_low_confidence(0.03) benign(0.061) TCGA-NC-A5HG-01 14 107218901 107218901 T C IGHV3-74 Silent p.A42A 0.41 TCGA-NC-A5HG-01 14 20692838 20692838 G T OR11H6 Missense_Mutation p.G324W 0.39 deleterious(0) possibly_damaging(0.469) TCGA-NC-A5HG-01 14 23249187 23249187 T G SLC7A7 Missense_Mutation p.K191N 0.06 deleterious(0) probably_damaging(0.981) TCGA-NC-A5HG-01 14 23447655 23447655 C T AJUBA Splice_Site p.X336_splice 0.45 TCGA-NC-A5HG-01 14 26949240 26949240 T G NOVA1 Silent p.T130T 0.38 TCGA-NC-A5HG-01 14 39644492 39644492 C T PNN Silent p.V3V 0.16 TCGA-NC-A5HG-01 14 44973985 44973985 C A FSCB Missense_Mutation p.A736S 0.44 tolerated(0.2) unknown(0) TCGA-NC-A5HG-01 14 47342696 47342696 C T MDGA2 Missense_Mutation p.G898R 0.37 deleterious(0) possibly_damaging(0.885) TCGA-NC-A5HG-01 14 52781683 52781683 G T PTGER2 Silent p.G139G 0.37 TCGA-NC-A5HG-01 14 52794162 52794162 C A PTGER2 Missense_Mutation p.A356D 0.52 tolerated(0.18) benign(0) TCGA-NC-A5HG-01 14 55310784 55310784 C A GCH1 Missense_Mutation p.R235L 0.39 deleterious(0.03) benign(0.06) TCGA-NC-A5HG-01 14 58605096 58605096 G A C14orf37 Silent p.T327T 0.41 TCGA-NC-A5HG-01 14 68292247 68292247 G A RAD51B Missense_Mutation p.E51K 0.12 tolerated(0.7) benign(0.004) TCGA-NC-A5HG-01 14 71444825 71444825 C T PCNX Missense_Mutation p.P591S 0.45 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-NC-A5HG-01 14 77274447 77274447 C T ANGEL1 Missense_Mutation p.A232T 0.38 tolerated(0.49) benign(0.019) TCGA-NC-A5HG-01 14 78235983 78235983 C T C14orf178 Missense_Mutation p.L111F 0.38 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-NC-A5HG-01 14 88651793 88651793 G T KCNK10 3'UTR 0.36 TCGA-NC-A5HG-01 14 94067071 94067071 G A UNC79 Missense_Mutation p.A1000T 0.12 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HG-01 14 94933704 94933704 G C SERPINA9 Missense_Mutation p.P233R 0.08 deleterious(0) possibly_damaging(0.753) TCGA-NC-A5HG-01 14 95054004 95054004 G A SERPINA5 Missense_Mutation p.S102N 0.41 tolerated(0.5) benign(0.004) TCGA-NC-A5HG-01 15 24922712 24922712 C G NPAP1 Silent p.T566T 0.55 TCGA-NC-A5HG-01 15 25213208 25213208 T C SNRPN 5'UTR 0.54 TCGA-NC-A5HG-01 15 34064325 34064325 C T RYR3 Silent p.H3007H 0.26 TCGA-NC-A5HG-01 15 34134119 34134119 C T RYR3 Silent p.Y4364Y 0.36 TCGA-NC-A5HG-01 15 42116193 42116193 C T MAPKBP1 Missense_Mutation p.P1389S 0.27 tolerated(0.94) benign(0.001) TCGA-NC-A5HG-01 15 45398449 45398449 G T DUOX2 Silent p.V674V 0.36 TCGA-NC-A5HG-01 15 52402028 52402028 G T BCL2L10 3'UTR 0.26 TCGA-NC-A5HG-01 15 52575075 52575075 C T MYO5C Nonsense_Mutation p.W14* 0.61 TCGA-NC-A5HG-01 15 59182507 59182507 C T SLTM Silent p.L684L 0.54 TCGA-NC-A5HG-01 15 62208203 62208203 C A VPS13C Nonsense_Mutation p.E2692* 0.28 TCGA-NC-A5HG-01 15 66273175 66273175 G C MEGF11 Missense_Mutation p.Q235E 0.19 deleterious(0) possibly_damaging(0.776) TCGA-NC-A5HG-01 15 79058435 79058435 T C ADAMTS7 Missense_Mutation p.E1273G 0.08 tolerated(0.08) benign(0.33) TCGA-NC-A5HG-01 15 85488382 85488382 C T SLC28A1 Missense_Mutation p.A634V 0.10 tolerated(0.09) benign(0.345) TCGA-NC-A5HG-01 15 86312753 86312753 C A KLHL25 Missense_Mutation p.V97L 0.16 tolerated(0.06) benign(0.11) TCGA-NC-A5HG-01 15 88476241 88476241 A G NTRK3 Splice_Site p.X630_splice 0.39 TCGA-NC-A5HG-01 15 89392844 89392844 C G ACAN Missense_Mutation p.I636M 0.49 deleterious(0) unknown(0) TCGA-NC-A5HG-01 15 90996443 90996443 C T IQGAP1 Missense_Mutation p.S469L 0.03 tolerated(0.11) benign(0.027) TCGA-NC-A5HG-01 15 91434888 91434888 G A FES Silent p.L545L 0.08 TCGA-NC-A5HG-01 15 97326938 97326938 A T SPATA8 Missense_Mutation p.E18V 0.06 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-NC-A5HG-01 15 99250942 99250942 C T IGF1R Silent p.T82T 0.04 TCGA-NC-A5HG-01 15 99440049 99440049 G C IGF1R Missense_Mutation p.K339N 0.07 deleterious(0.05) benign(0.011) TCGA-NC-A5HG-01 15 99672390 99672390 G A SYNM Silent p.G1274G 0.03 TCGA-NC-A5HG-01 15 99901571 99901571 G A LRRC28 Silent p.V242V 0.08 TCGA-NC-A5HG-01 16 15155636 15155636 G A RRN3 Missense_Mutation p.P641S 0.11 deleterious_low_confidence(0.01) probably_damaging(0.968) TCGA-NC-A5HG-01 16 16257044 16257044 C G ABCC6 Silent p.L1104L 0.57 TCGA-NC-A5HG-01 16 18549901 18549901 G C NOMO2 Silent p.V389V 0.60 TCGA-NC-A5HG-01 16 18861344 18861344 G T SMG1 Silent p.L1796L 0.56 TCGA-NC-A5HG-01 16 19468222 19468222 A T TMC5 Intron 0.54 TCGA-NC-A5HG-01 16 22358317 22358317 G A CDR2 Missense_Mutation p.T445I 0.12 tolerated(0.21) benign(0.394) TCGA-NC-A5HG-01 16 23079276 23079276 C T USP31 3'UTR 0.22 TCGA-NC-A5HG-01 16 23200799 23200799 C A SCNN1G Missense_Mutation p.S142Y 0.23 deleterious(0.02) possibly_damaging(0.516) TCGA-NC-A5HG-01 16 24873930 24873930 G A SLC5A11 Silent p.V48V 0.25 TCGA-NC-A5HG-01 16 24920273 24920273 G A SLC5A11 Silent p.V502V 0.11 TCGA-NC-A5HG-01 16 24981892 24981892 G A ARHGAP17 Missense_Mutation p.P70S 0.19 deleterious(0.05) probably_damaging(0.919) TCGA-NC-A5HG-01 16 30124700 30124700 C T GDPD3 Missense_Mutation p.A34T 0.19 tolerated(0.28) benign(0.004) TCGA-NC-A5HG-01 16 30364955 30364955 C T CD2BP2 Missense_Mutation p.R181Q 0.14 tolerated(0.29) benign(0.043) TCGA-NC-A5HG-01 16 30970416 30970416 C G SETD1A Nonsense_Mutation p.S52* 0.14 TCGA-NC-A5HG-01 16 31087660 31087660 C T ZNF646 Silent p.P5P 0.13 TCGA-NC-A5HG-01 16 31504887 31504887 G A C16orf58 Intron 0.24 TCGA-NC-A5HG-01 16 53860323 53860323 G A FTO Missense_Mutation p.G224E 0.28 deleterious(0) probably_damaging(1) TCGA-NC-A5HG-01 16 54319455 54319455 G A IRX3 Missense_Mutation p.P113L 0.33 tolerated(0.12) benign(0.394) TCGA-NC-A5HG-01 16 56717154 56717154 G A MT1X Intron 0.07 TCGA-NC-A5HG-01 16 57735870 57735870 C T CCDC135 Missense_Mutation p.T176I 0.07 deleterious(0.01) possibly_damaging(0.786) TCGA-NC-A5HG-01 16 58149981 58149981 G C C16orf80 Missense_Mutation p.I80M 0.21 deleterious(0.02) benign(0.089) TCGA-NC-A5HG-01 16 67578301 67578301 C T FAM65A Silent p.V920V 0.05 TCGA-NC-A5HG-01 16 71218827 71218827 A T HYDIN Missense_Mutation p.L68M 0.30 benign(0.408) TCGA-NC-A5HG-01 16 71724601 71724601 G A PHLPP2 Missense_Mutation p.H144Y 0.46 tolerated(0.22) benign(0.034) TCGA-NC-A5HG-01 16 72107846 72107846 T C HPR Missense_Mutation p.Y21H 0.25 tolerated_low_confidence(0.15) benign(0) TCGA-NC-A5HG-01 16 74386199 74386199 G - RP11-252A24.2 RNA 0.27 TCGA-NC-A5HG-01 16 74750426 74750426 C G FA2H Missense_Mutation p.L286F 0.20 tolerated(0.49) possibly_damaging(0.493) TCGA-NC-A5HG-01 16 76482050 76482050 C G CNTNAP4 Missense_Mutation p.P202R 0.22 tolerated(0.19) benign(0.001) TCGA-NC-A5HG-01 16 76528928 76528928 G T CNTNAP4 Missense_Mutation p.Q661H 0.36 deleterious(0.03) benign(0.049) TCGA-NC-A5HG-01 16 76592539 76592539 C A CNTNAP4 Missense_Mutation p.Q1223K 0.25 tolerated(0.07) benign(0.2) TCGA-NC-A5HG-01 16 77334245 77334245 G A ADAMTS18 Silent p.V863V 0.26 TCGA-NC-A5HG-01 16 84118596 84118596 C A MBTPS1 Missense_Mutation p.L426F 0.23 deleterious(0) probably_damaging(1) TCGA-NC-A5HG-01 16 84879532 84879532 C T CRISPLD2 Intron 0.53 TCGA-NC-A5HG-01 16 89349445 89349445 C T ANKRD11 Missense_Mutation p.D1169N 0.18 possibly_damaging(0.905) TCGA-NC-A5HG-01 17 10400764 10400764 C G MYH1 Silent p.L1457L 0.77 TCGA-NC-A5HG-01 17 11603199 11603199 A T DNAH9 Missense_Mutation p.Q1675L 0.63 possibly_damaging(0.67) TCGA-NC-A5HG-01 17 16075234 16075234 C G NCOR1 Silent p.S106S 0.30 TCGA-NC-A5HG-01 17 18881312 18881312 C T FAM83G Missense_Mutation p.R556Q 0.67 tolerated_low_confidence(0.37) benign(0.001) TCGA-NC-A5HG-01 17 29556247 29556247 G T NF1 Nonsense_Mutation p.E872* 0.66 TCGA-NC-A5HG-01 17 34869530 34869530 C T MYO19 Nonsense_Mutation p.W253* 0.77 TCGA-NC-A5HG-01 17 36873206 36873206 G C MLLT6 Missense_Mutation p.L541F 0.74 deleterious(0.03) unknown(0) TCGA-NC-A5HG-01 17 4192526 4192526 G A UBE2G1 Missense_Mutation p.A142V 0.78 deleterious(0.03) benign(0.321) TCGA-NC-A5HG-01 17 43482446 43482446 G A ARHGAP27 Silent p.P23P 0.43 TCGA-NC-A5HG-01 17 45901523 45901523 C T MRPL10 3'UTR 0.51 TCGA-NC-A5HG-01 17 46257464 46257464 C G SKAP1 Missense_Mutation p.E260Q 0.16 tolerated(0.34) benign(0.014) TCGA-NC-A5HG-01 17 46691929 46691929 G A HOXB8 Silent p.G46G 0.29 TCGA-NC-A5HG-01 17 46868941 46868941 G C TTLL6 Nonsense_Mutation p.Y341* 0.40 TCGA-NC-A5HG-01 17 62746126 62746126 C T hsa-mir-6080 Intron 0.85 TCGA-NC-A5HG-01 17 65343302 65343302 G C PSMD12 Missense_Mutation p.S242C 0.07 deleterious(0) possibly_damaging(0.827) TCGA-NC-A5HG-01 17 67097043 67097043 C G ABCA6 Missense_Mutation p.K969N 0.33 deleterious(0.01) possibly_damaging(0.718) TCGA-NC-A5HG-01 17 67133477 67133477 C A ABCA6 Missense_Mutation p.Q87H 0.89 deleterious(0.02) probably_damaging(0.983) TCGA-NC-A5HG-01 17 72469830 72469830 G A CD300A Missense_Mutation p.G66R 0.50 tolerated(0.44) benign(0.369) TCGA-NC-A5HG-01 17 74729222 74729222 C G METTL23 Missense_Mutation p.H83D 0.10 tolerated(0.21) benign(0.006) TCGA-NC-A5HG-01 17 7577120 7577120 C A TP53 Missense_Mutation p.R273L 0.81 deleterious(0) probably_damaging(0.993) TCGA-NC-A5HG-01 17 7577121 7577121 G C TP53 Missense_Mutation p.R273G 0.81 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HG-01 17 76562700 76562700 G A DNAH17 Missense_Mutation p.A522V 0.33 benign(0.001) TCGA-NC-A5HG-01 17 7695236 7695236 T A DNAH2 Missense_Mutation p.V2301E 0.67 benign(0.375) TCGA-NC-A5HG-01 17 79278623 79278623 C T LINC00482 RNA 0.50 TCGA-NC-A5HG-01 17 79792819 79792819 C G PPP1R27 Missense_Mutation p.R4T 0.38 tolerated(0.1) probably_damaging(0.966) TCGA-NC-A5HG-01 17 79973183 79973183 G A ASPSCR1 Missense_Mutation p.G529D 0.32 tolerated_low_confidence(0.06) benign(0.412) TCGA-NC-A5HG-01 17 80789946 80789946 T A ZNF750 Nonsense_Mutation p.K129* 0.47 TCGA-NC-A5HG-01 17 8646944 8646944 C A CCDC42 Missense_Mutation p.Q98H 0.74 deleterious(0.01) probably_damaging(0.996) TCGA-NC-A5HG-01 18 24442166 24442166 C T AQP4 Missense_Mutation p.G143R 0.69 deleterious(0.02) probably_damaging(0.999) TCGA-NC-A5HG-01 18 25593711 25593711 T G CDH2 Missense_Mutation p.Q112P 0.72 tolerated(0.34) benign(0.364) TCGA-NC-A5HG-01 18 42533231 42533231 A G SETBP1 Missense_Mutation p.Y1309C 0.83 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HG-01 18 44560030 44560030 C G TCEB3B Missense_Mutation p.V536L 0.84 deleterious(0) benign(0.039) TCGA-NC-A5HG-01 18 44561436 44561436 C T TCEB3B Missense_Mutation p.R67K 0.82 tolerated(0.79) probably_damaging(0.963) TCGA-NC-A5HG-01 18 47101881 47101881 C T LIPG Silent p.H238H 0.85 TCGA-NC-A5HG-01 18 47110079 47110079 C A LIPG Silent p.P437P 0.84 TCGA-NC-A5HG-01 18 47802094 47802094 C T MBD1 Missense_Mutation p.R223Q 0.24 tolerated(0.27) benign(0.031) TCGA-NC-A5HG-01 18 60243850 60243850 G T ZCCHC2 3'UTR 0.87 TCGA-NC-A5HG-01 18 64172309 64172309 G T CDH19 Missense_Mutation p.Q687K 0.80 tolerated(0.58) possibly_damaging(0.842) TCGA-NC-A5HG-01 18 70209094 70209094 G T CBLN2 Missense_Mutation p.T101N 0.77 tolerated(0.12) benign(0.123) TCGA-NC-A5HG-01 18 76753276 76753276 T A SALL3 Missense_Mutation p.F429I 0.24 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HG-01 19 1043331 1043331 A T ABCA7 Splice_Site p.X264_splice 0.12 TCGA-NC-A5HG-01 19 11408863 11408863 G T TSPAN16 Nonsense_Mutation p.G39* 0.71 TCGA-NC-A5HG-01 19 12243601 12243601 C A ZNF20 Missense_Mutation p.R467L 0.65 deleterious(0) benign(0.069) TCGA-NC-A5HG-01 19 12501270 12501270 A G ZNF799 3'UTR 0.11 TCGA-NC-A5HG-01 19 12575435 12575435 G A ZNF709 Missense_Mutation p.S434F 0.20 tolerated(0.65) probably_damaging(0.93) TCGA-NC-A5HG-01 19 12637322 12637322 C A ZNF564 Missense_Mutation p.V534L 0.15 tolerated(0.42) benign(0.051) TCGA-NC-A5HG-01 19 13419302 13419302 A G CACNA1A Missense_Mutation p.I570T 0.14 probably_damaging(0.923) TCGA-NC-A5HG-01 19 1478936 1478936 C A C19orf25 Intron 0.32 TCGA-NC-A5HG-01 19 14938621 14938621 C T OR7A5 Missense_Mutation p.V145I 0.70 tolerated_low_confidence(0.05) benign(0.168) TCGA-NC-A5HG-01 19 17387433 17387433 G A BABAM1 Silent p.K233K 0.16 TCGA-NC-A5HG-01 19 1828387 1828387 G A REXO1 Missense_Mutation p.A134V 0.23 deleterious(0.02) benign(0.166) TCGA-NC-A5HG-01 19 19822170 19822170 C T ZNF14 Silent p.E640E 0.11 TCGA-NC-A5HG-01 19 20002426 20002426 G T ZNF253 Missense_Mutation p.V124L 0.10 tolerated(0.14) probably_damaging(0.97) TCGA-NC-A5HG-01 19 20296881 20296881 C G ZNF486 Silent p.A81A 0.51 TCGA-NC-A5HG-01 19 22271659 22271659 G A ZNF257 Silent p.E369E 0.40 TCGA-NC-A5HG-01 19 23544737 23544737 T A ZNF91 Missense_Mutation p.K348N 0.36 deleterious(0) benign(0.001) TCGA-NC-A5HG-01 19 31769124 31769124 G A TSHZ3 Silent p.S525S 0.28 TCGA-NC-A5HG-01 19 32844509 32844509 G A ZNF507 Missense_Mutation p.G258D 0.05 tolerated(0.08) probably_damaging(0.992) TCGA-NC-A5HG-01 19 32949370 32949370 C A DPY19L3 Missense_Mutation p.S426Y 0.09 tolerated(0.94) benign(0.126) TCGA-NC-A5HG-01 19 33167186 33167186 G A RGS9BP Missense_Mutation p.C6Y 0.18 deleterious(0) possibly_damaging(0.884) TCGA-NC-A5HG-01 19 39915032 39915032 C T PLEKHG2 Missense_Mutation p.P1087S 0.47 tolerated_low_confidence(0.34) benign(0.021) TCGA-NC-A5HG-01 19 40953879 40953879 C T BLVRB Missense_Mutation p.D180N 0.25 deleterious(0.01) probably_damaging(1) TCGA-NC-A5HG-01 19 42626700 42626700 G A POU2F2 Silent p.A19A 0.10 TCGA-NC-A5HG-01 19 43262306 43262306 C T PSG8 Missense_Mutation p.S186N 0.52 tolerated(0.08) benign(0.026) TCGA-NC-A5HG-01 19 44793178 44793178 T C ZNF235 Missense_Mutation p.H137R 0.55 tolerated(0.21) benign(0.001) TCGA-NC-A5HG-01 19 4550161 4550161 C G SEMA6B Silent p.A415A 0.13 TCGA-NC-A5HG-01 19 46142283 46142283 G A EML2 Intron 0.10 TCGA-NC-A5HG-01 19 48253497 48253497 G A GLTSCR2 Missense_Mutation p.V118I 0.45 tolerated(0.86) benign(0.009) TCGA-NC-A5HG-01 19 48631230 48631230 C A LIG1 Silent p.V623V 0.23 TCGA-NC-A5HG-01 19 49514506 49514506 C T RUVBL2 Missense_Mutation p.R314W 0.46 deleterious(0) probably_damaging(0.986) TCGA-NC-A5HG-01 19 51020800 51020800 C T LRRC4B 3'UTR 0.40 TCGA-NC-A5HG-01 19 51169614 51169614 G T SHANK1 Missense_Mutation p.A1868D 0.54 unknown(0) TCGA-NC-A5HG-01 19 51503927 51503927 G A KLK8 Missense_Mutation p.P40S 0.42 tolerated_low_confidence(0.53) probably_damaging(0.932) TCGA-NC-A5HG-01 19 5222803 5222803 C T PTPRS Silent p.L1000L 0.25 TCGA-NC-A5HG-01 19 53304402 53304402 T - ZNF28 Frame_Shift_Del p.K232Nfs*4 0.23 TCGA-NC-A5HG-01 19 53886197 53886197 T A ZNF525 3'UTR 0.25 TCGA-NC-A5HG-01 19 54080181 54080181 C T ZNF331 Nonsense_Mutation p.Q123* 0.28 TCGA-NC-A5HG-01 19 54257301 54257301 T G MIR527 RNA 0.12 TCGA-NC-A5HG-01 19 54515350 54515350 C A CACNG6 Silent p.I230I 0.27 TCGA-NC-A5HG-01 19 55048214 55048214 G C KIR3DX1 Missense_Mutation p.A261P 0.30 tolerated(0.4) benign(0.056) TCGA-NC-A5HG-01 19 55750809 55750809 T C PPP6R1 Missense_Mutation p.N572S 0.44 tolerated(0.06) possibly_damaging(0.546) TCGA-NC-A5HG-01 19 57037275 57037275 C G ZNF471 Silent p.S613S 0.06 TCGA-NC-A5HG-01 19 57176504 57176504 C A ZNF835 Missense_Mutation p.E21D 0.34 tolerated(0.11) benign(0.029) TCGA-NC-A5HG-01 19 58115732 58115732 C T ZNF530 Missense_Mutation p.R40C 0.21 tolerated(0.27) benign(0.001) TCGA-NC-A5HG-01 19 7743060 7743060 C T C19orf59 Silent p.S85S 0.29 TCGA-NC-A5HG-01 19 8563311 8563311 G A PRAM1 Missense_Mutation p.P461S 0.53 deleterious(0) probably_damaging(1) TCGA-NC-A5HG-01 19 8808786 8808786 G T ACTL9 Nonsense_Mutation p.S89* 0.47 TCGA-NC-A5HG-01 19 9021173 9021173 C T MUC16 Missense_Mutation p.G12384S 0.40 benign(0.095) TCGA-NC-A5HG-01 19 9075161 9075161 C A MUC16 Missense_Mutation p.M4095I 0.44 unknown(0) TCGA-NC-A5HG-01 19 9453672 9453672 T C ZNF559 Silent p.H515H 0.37 TCGA-NC-A5HG-01 1 100350005 100350005 C T AGL Silent p.F848F 0.28 TCGA-NC-A5HG-01 1 100376294 100376294 G A AGL Missense_Mutation p.E1243K 0.20 tolerated(0.93) benign(0.004) TCGA-NC-A5HG-01 1 10166382 10166382 C T UBE4B Missense_Mutation p.H313Y 0.24 tolerated_low_confidence(0.52) benign(0.152) TCGA-NC-A5HG-01 1 101705151 101705151 T G S1PR1 Missense_Mutation p.L204R 0.22 deleterious(0.02) possibly_damaging(0.887) TCGA-NC-A5HG-01 1 103548394 103548394 G T COL11A1 Missense_Mutation p.Q81K 0.52 probably_damaging(0.996) TCGA-NC-A5HG-01 1 10719971 10719971 G T CASZ1 Nonsense_Mutation p.Y376* 0.51 TCGA-NC-A5HG-01 1 10725541 10725541 C A CASZ1 Missense_Mutation p.C35F 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-NC-A5HG-01 1 109270637 109270637 A T FNDC7 Missense_Mutation p.N440I 0.54 deleterious(0) benign(0.078) TCGA-NC-A5HG-01 1 111495420 111495420 T A LRIF1 Missense_Mutation p.Y29F 0.53 deleterious(0) possibly_damaging(0.801) TCGA-NC-A5HG-01 1 112020331 112020331 T A C1orf162 Silent p.L87L 0.29 TCGA-NC-A5HG-01 1 114948072 114948072 G A TRIM33 Missense_Mutation p.H910Y 0.45 deleterious(0) probably_damaging(0.991) TCGA-NC-A5HG-01 1 11589919 11589919 G A PTCHD2 Missense_Mutation p.R1002Q 0.23 deleterious(0.01) probably_damaging(0.951) TCGA-NC-A5HG-01 1 117699367 117699367 C T VTCN1 Missense_Mutation p.E92K 0.10 tolerated(0.06) benign(0.033) TCGA-NC-A5HG-01 1 118523984 118523984 A T SPAG17 Missense_Mutation p.S1971R 0.24 tolerated(0.47) benign(0.005) TCGA-NC-A5HG-01 1 13111725 13111725 C T PRAMEF23 Intron 0.41 TCGA-NC-A5HG-01 1 144865813 144865813 T C PDE4DIP Missense_Mutation p.R1923G 0.30 deleterious(0) possibly_damaging(0.709) TCGA-NC-A5HG-01 1 144865814 144865814 G T PDE4DIP Silent p.S1922S 0.30 TCGA-NC-A5HG-01 1 149915673 149915673 C T OTUD7B 3'UTR 0.23 TCGA-NC-A5HG-01 1 149915807 149915807 C G OTUD7B Silent p.L827L 0.20 TCGA-NC-A5HG-01 1 149939422 149939422 G A OTUD7B Missense_Mutation p.S100F 0.27 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HG-01 1 151498126 151498126 A G CGN Silent p.A541A 0.06 TCGA-NC-A5HG-01 1 152127101 152127101 C T RPTN 3'UTR 0.38 TCGA-NC-A5HG-01 1 152280008 152280008 G A FLG Missense_Mutation p.H2452Y 0.50 possibly_damaging(0.791) TCGA-NC-A5HG-01 1 153963257 153963257 C T RPS27 5'UTR 0.35 TCGA-NC-A5HG-01 1 155159996 155159996 C T MUC1 Missense_Mutation p.G380S 0.36 deleterious(0) probably_damaging(0.994) TCGA-NC-A5HG-01 1 155324279 155324279 C T ASH1L Missense_Mutation p.G2400R 0.47 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-NC-A5HG-01 1 157803111 157803111 C A CD5L Missense_Mutation p.G304W 0.35 deleterious(0) probably_damaging(1) TCGA-NC-A5HG-01 1 158262455 158262455 C T CD1C Missense_Mutation p.A227V 0.40 tolerated(1) benign(0.002) TCGA-NC-A5HG-01 1 158607970 158607970 A T SPTA1 Missense_Mutation p.V1681D 0.48 tolerated(0.33) benign(0.424) TCGA-NC-A5HG-01 1 158615043 158615043 T G SPTA1 Silent p.R1377R 0.40 TCGA-NC-A5HG-01 1 159558544 159558544 G C APCS 3'UTR 0.45 TCGA-NC-A5HG-01 1 159832308 159832308 T A VSIG8 Nonsense_Mutation p.R2* 0.50 TCGA-NC-A5HG-01 1 161479645 161479645 C T FCGR2A Nonsense_Mutation p.Q134* 0.39 TCGA-NC-A5HG-01 1 16200612 16200612 G A SPEN Intron 0.72 TCGA-NC-A5HG-01 1 162535910 162535910 C T UAP1 Silent p.L18L 0.37 TCGA-NC-A5HG-01 1 16257806 16257806 C T SPEN Missense_Mutation p.P1691S 0.61 benign(0.009) TCGA-NC-A5HG-01 1 164815947 164815947 C A PBX1 3'UTR 0.35 TCGA-NC-A5HG-01 1 166039820 166039820 C A FAM78B Missense_Mutation p.W148C 0.51 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HG-01 1 167666432 167666432 G C RCSD1 Missense_Mutation p.E191Q 0.13 tolerated(0.23) possibly_damaging(0.698) TCGA-NC-A5HG-01 1 169578882 169578882 T A SELP Missense_Mutation p.D398V 0.48 deleterious(0.04) possibly_damaging(0.747) TCGA-NC-A5HG-01 1 176838098 176838098 A G ASTN1 Missense_Mutation p.Y1177H 0.35 deleterious(0) probably_damaging(0.995) TCGA-NC-A5HG-01 1 177030364 177030364 G A ASTN1 Silent p.R107R 0.44 TCGA-NC-A5HG-01 1 177030374 177030374 G T ASTN1 Missense_Mutation p.P104H 0.44 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-NC-A5HG-01 1 183514319 183514319 C T SMG7 Missense_Mutation p.P702S 0.42 tolerated_low_confidence(0.12) benign(0.424) TCGA-NC-A5HG-01 1 192548291 192548291 G C RGS1 Missense_Mutation p.E157Q 0.14 deleterious(0) possibly_damaging(0.856) TCGA-NC-A5HG-01 1 19432328 19432328 G A UBR4 Silent p.F4134F 0.20 TCGA-NC-A5HG-01 1 196884223 196884223 G T CFHR4 Missense_Mutation p.V498L 0.44 deleterious(0.04) benign(0.097) TCGA-NC-A5HG-01 1 204438353 204438353 G A PIK3C2B Missense_Mutation p.S193F 0.48 deleterious_low_confidence(0) benign(0.002) TCGA-NC-A5HG-01 1 205180548 205180548 C T DSTYK Missense_Mutation p.G39E 0.59 tolerated(1) benign(0.045) TCGA-NC-A5HG-01 1 205549807 205549807 G A MFSD4 Missense_Mutation p.G150S 0.45 deleterious(0) probably_damaging(1) TCGA-NC-A5HG-01 1 205884304 205884304 G A SLC26A9 Missense_Mutation p.L794F 0.46 deleterious_low_confidence(0.02) benign(0.002) TCGA-NC-A5HG-01 1 206224321 206224321 C T AVPR1B 5'UTR 0.07 TCGA-NC-A5HG-01 1 206666691 206666691 A G IKBKE Silent p.T675T 0.50 TCGA-NC-A5HG-01 1 207196553 207196553 G A C1orf116 Missense_Mutation p.P186S 0.37 tolerated(0.22) benign(0.297) TCGA-NC-A5HG-01 1 211751772 211751772 G A SLC30A1 Silent p.A61A 0.48 TCGA-NC-A5HG-01 1 222867603 222867603 T G AIDA Missense_Mutation p.K61N 0.05 deleterious(0.01) probably_damaging(0.99) TCGA-NC-A5HG-01 1 226044353 226044353 C G TMEM63A Missense_Mutation p.S524T 0.31 deleterious(0) probably_damaging(0.931) TCGA-NC-A5HG-01 1 228433137 228433137 G A OBSCN Missense_Mutation p.E1261K 0.30 possibly_damaging(0.546) TCGA-NC-A5HG-01 1 228444436 228444436 A T OBSCN Missense_Mutation p.E1557V 0.36 possibly_damaging(0.791) TCGA-NC-A5HG-01 1 228509681 228509681 G C OBSCN Missense_Mutation p.D6004H 0.45 probably_damaging(0.956) TCGA-NC-A5HG-01 1 231059630 231059630 G A TTC13 Nonsense_Mutation p.R591* 0.07 TCGA-NC-A5HG-01 1 237060940 237060940 A T MTR Missense_Mutation p.D1265V 0.38 deleterious(0) benign(0.272) TCGA-NC-A5HG-01 1 237550642 237550642 G T RYR2 Missense_Mutation p.S213I 0.44 benign(0.258) TCGA-NC-A5HG-01 1 237890500 237890500 G T RYR2 Splice_Site p.X3613_splice 0.53 TCGA-NC-A5HG-01 1 242271066 242271066 T A PLD5 Missense_Mutation p.L382F 0.38 deleterious(0) benign(0.049) TCGA-NC-A5HG-01 1 247201427 247201427 C G ZNF670 Missense_Mutation p.S165T 0.29 deleterious(0.01) benign(0.099) TCGA-NC-A5HG-01 1 247978690 247978690 C T OR14A16 Silent p.T114T 0.55 TCGA-NC-A5HG-01 1 248059583 248059583 C T OR2W3 Missense_Mutation p.S232L 0.21 deleterious(0.03) benign(0.013) TCGA-NC-A5HG-01 1 248366583 248366583 A G OR2M3 Missense_Mutation p.M72V 0.26 tolerated(0.11) benign(0.02) TCGA-NC-A5HG-01 1 248789570 248789570 T C OR2T11 Missense_Mutation p.Y287C 0.57 deleterious(0) possibly_damaging(0.863) TCGA-NC-A5HG-01 1 248813516 248813516 T A OR2T27 Missense_Mutation p.T224S 0.39 deleterious(0.02) possibly_damaging(0.626) TCGA-NC-A5HG-01 1 248813997 248813997 G C OR2T27 Silent p.L63L 0.15 TCGA-NC-A5HG-01 1 27102065 27102065 C G ARID1A Intron 0.42 TCGA-NC-A5HG-01 1 31406059 31406059 C A PUM1 Nonstop_Mutation p.*1189Lext*71 0.24 TCGA-NC-A5HG-01 1 35919179 35919179 G A KIAA0319L Missense_Mutation p.S631L 0.23 tolerated(0.7) possibly_damaging(0.478) TCGA-NC-A5HG-01 1 40947522 40947522 C T ZFP69 Missense_Mutation p.S72F 0.55 tolerated(0.72) benign(0.004) TCGA-NC-A5HG-01 1 43779566 43779566 C T TIE1 Missense_Mutation p.A779V 0.21 deleterious(0.02) probably_damaging(0.993) TCGA-NC-A5HG-01 1 43783031 43783031 G A TIE1 Missense_Mutation p.M857I 0.31 tolerated(0.18) probably_damaging(0.985) TCGA-NC-A5HG-01 1 44019258 44019258 C T PTPRF Missense_Mutation p.R63C 0.24 deleterious(0) probably_damaging(0.918) TCGA-NC-A5HG-01 1 60299169 60299169 G C HOOK1 Missense_Mutation p.Q122H 0.20 deleterious(0) probably_damaging(0.962) TCGA-NC-A5HG-01 1 62734128 62734128 C G KANK4 Missense_Mutation p.E688Q 0.28 deleterious(0.01) possibly_damaging(0.727) TCGA-NC-A5HG-01 1 65855280 65855280 A G DNAJC6 Missense_Mutation p.S480G 0.26 tolerated(0.39) benign(0) TCGA-NC-A5HG-01 1 67288166 67288166 C T WDR78 Missense_Mutation p.G792R 0.52 tolerated(0.15) probably_damaging(0.985) TCGA-NC-A5HG-01 1 71439998 71439998 C A PTGER3 Intron 0.45 TCGA-NC-A5HG-01 1 71439999 71439999 A G PTGER3 Intron 0.45 TCGA-NC-A5HG-01 1 76384743 76384743 C A ASB17 Missense_Mutation p.R261I 0.52 deleterious(0) probably_damaging(0.928) TCGA-NC-A5HG-01 1 77806181 77806181 G T AK5 Missense_Mutation p.R273S 0.17 deleterious(0) probably_damaging(1) TCGA-NC-A5HG-01 1 82451039 82451039 G A LPHN2 Missense_Mutation p.G1153R 0.16 deleterious(0.03) benign(0.028) TCGA-NC-A5HG-01 1 86372911 86372911 C T COL24A1 Missense_Mutation p.G915E 0.54 deleterious(0) probably_damaging(1) TCGA-NC-A5HG-01 1 91403188 91403188 C T ZNF644 Missense_Mutation p.G1181E 0.20 tolerated(0.43) probably_damaging(1) TCGA-NC-A5HG-01 1 99772027 99772027 C T LPPR4 Nonsense_Mutation p.Q585* 0.56 TCGA-NC-A5HG-01 20 10653636 10653636 G C JAG1 Missense_Mutation p.Q34E 0.47 deleterious(0.02) benign(0.174) TCGA-NC-A5HG-01 20 16360282 16360282 C T KIF16B Missense_Mutation p.E789K 0.41 deleterious(0.03) possibly_damaging(0.615) TCGA-NC-A5HG-01 20 17489561 17489561 C A BFSP1 Missense_Mutation p.Q236H 0.18 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HG-01 20 20553601 20553601 C T RALGAPA2 Missense_Mutation p.G940E 0.38 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HG-01 20 20610169 20610169 C T RALGAPA2 Silent p.Q357Q 0.40 TCGA-NC-A5HG-01 20 3128164 3128164 T C FASTKD5 Missense_Mutation p.D518G 0.94 tolerated(0.28) possibly_damaging(0.654) TCGA-NC-A5HG-01 20 31622639 31622639 G A BPIFB6 Missense_Mutation p.E125K 0.42 tolerated(0.55) benign(0.035) TCGA-NC-A5HG-01 20 34207611 34207611 G C SPAG4 Silent p.P340P 0.41 TCGA-NC-A5HG-01 20 3686626 3686626 G C SIGLEC1 Missense_Mutation p.D157E 0.06 tolerated(0.49) benign(0.042) TCGA-NC-A5HG-01 20 39750674 39750674 C G TOP1 Missense_Mutation p.Q692E 0.14 tolerated(1) benign(0.001) TCGA-NC-A5HG-01 20 42169539 42169539 C T L3MBTL1 Intron 0.22 TCGA-NC-A5HG-01 20 42194797 42194797 G T SGK2 5'UTR 0.52 TCGA-NC-A5HG-01 20 44441994 44441994 G C UBE2C Intron 0.05 TCGA-NC-A5HG-01 20 44523342 44523342 C G CTSA Silent p.L295L 0.17 TCGA-NC-A5HG-01 20 47888233 47888233 G C ZNFX1 Missense_Mutation p.P39R 0.21 tolerated_low_confidence(0.31) benign(0.227) TCGA-NC-A5HG-01 20 49510650 49510650 C T ADNP Missense_Mutation p.G201R 0.13 tolerated(0.15) benign(0.386) TCGA-NC-A5HG-01 20 5098213 5098213 C T PCNA Missense_Mutation p.C162Y 0.34 deleterious(0.04) benign(0.113) TCGA-NC-A5HG-01 20 56138244 56138244 G A PCK1 Silent p.E257E 0.18 TCGA-NC-A5HG-01 20 56138245 56138245 G A PCK1 Missense_Mutation p.E258K 0.18 deleterious(0) probably_damaging(0.961) TCGA-NC-A5HG-01 20 58587861 58587861 C A CDH26 3'UTR 0.14 TCGA-NC-A5HG-01 20 60911465 60911465 C A LAMA5 Missense_Mutation p.G752W 0.38 probably_damaging(1) TCGA-NC-A5HG-01 20 61143854 61143854 C G C20orf166 5'Flank 0.07 TCGA-NC-A5HG-01 20 62368988 62368988 C T LIME1 Missense_Mutation p.T29I 0.45 deleterious(0) possibly_damaging(0.702) TCGA-NC-A5HG-01 20 7967976 7967976 A G TMX4 Missense_Mutation p.F192L 0.33 deleterious(0) probably_damaging(0.919) TCGA-NC-A5HG-01 20 9343589 9343589 A G PLCB4 Missense_Mutation p.N139S 0.86 tolerated(0.42) benign(0.228) TCGA-NC-A5HG-01 20 9496947 9496947 G A LAMP5 Silent p.L138L 0.25 TCGA-NC-A5HG-01 21 15588589 15588589 G C RBM11 Missense_Mutation p.E28Q 0.17 deleterious(0.02) benign(0.387) TCGA-NC-A5HG-01 21 30304837 30304837 C T LTN1 Silent p.Q1721Q 0.41 TCGA-NC-A5HG-01 21 31812977 31812977 G C KRTAP15-1 Missense_Mutation p.G111A 0.40 deleterious(0.05) possibly_damaging(0.873) TCGA-NC-A5HG-01 21 31964831 31964831 G A KRTAP6-3 Missense_Mutation p.G16R 0.40 unknown(0) TCGA-NC-A5HG-01 21 32554872 32554872 G A TIAM1 Missense_Mutation p.P918L 0.17 tolerated(0.13) benign(0.002) TCGA-NC-A5HG-01 21 34399517 34399517 G A OLIG2 Missense_Mutation p.R116H 0.45 deleterious(0) probably_damaging(1) TCGA-NC-A5HG-01 21 34721452 34721452 G C IFNAR1 Missense_Mutation p.D282H 0.17 deleterious(0.04) benign(0.281) TCGA-NC-A5HG-01 21 34721566 34721566 G A IFNAR1 Missense_Mutation p.E320K 0.20 tolerated(0.21) benign(0.016) TCGA-NC-A5HG-01 21 37732253 37732253 G A MORC3 Silent p.Q403Q 0.25 TCGA-NC-A5HG-01 21 44590657 44590657 T A CRYAA Missense_Mutation p.F74I 0.29 tolerated(0.38) benign(0.002) TCGA-NC-A5HG-01 21 45978340 45978340 G C KRTAP10-3 Missense_Mutation p.P87A 0.03 deleterious(0.01) unknown(0) TCGA-NC-A5HG-01 21 47821566 47821566 C T PCNT Silent p.G1631G 0.35 TCGA-NC-A5HG-01 22 17446988 17446988 A C GAB4 Splice_Site p.X430_splice 0.13 TCGA-NC-A5HG-01 22 18355563 18355563 G C MICAL3 Intron 0.08 TCGA-NC-A5HG-01 22 19026606 19026606 G C DGCR2 Silent p.V475V 0.10 TCGA-NC-A5HG-01 22 19967661 19967661 C A ARVCF Missense_Mutation p.G334V 0.09 tolerated(0.11) probably_damaging(1) TCGA-NC-A5HG-01 22 20106642 20106642 T G RANBP1 Missense_Mutation p.L41R 0.04 tolerated(0.2) probably_damaging(0.96) TCGA-NC-A5HG-01 22 20843366 20843366 C T KLHL22 Missense_Mutation p.D45N 0.18 tolerated(0.47) possibly_damaging(0.783) TCGA-NC-A5HG-01 22 22556283 22556283 C T IGLV11-55 Missense_Mutation p.P33S 0.50 tolerated(0.08) benign(0.153) TCGA-NC-A5HG-01 22 23656222 23656222 C T BCR Silent p.N1175N 0.49 TCGA-NC-A5HG-01 22 26166144 26166144 G A MYO18B Splice_Site p.X527_splice 0.37 TCGA-NC-A5HG-01 22 26173639 26173639 C T MYO18B Silent p.D653D 0.10 TCGA-NC-A5HG-01 22 29708104 29708104 C G GAS2L1 3'Flank 0.03 TCGA-NC-A5HG-01 22 36627384 36627384 A G APOL2 Splice_Site p.X46_splice 0.26 TCGA-NC-A5HG-01 22 36662154 36662154 C T APOL1 3'UTR 0.36 TCGA-NC-A5HG-01 22 37881974 37881974 C G MFNG Missense_Mutation p.R81T 0.28 deleterious(0.01) possibly_damaging(0.857) TCGA-NC-A5HG-01 22 38343310 38343310 C T C22orf23 Silent p.E109E 0.08 TCGA-NC-A5HG-01 22 40257949 40257949 C A ENTHD1 Missense_Mutation p.C138F 0.55 tolerated(0.23) benign(0.001) TCGA-NC-A5HG-01 22 42059743 42059743 G T XRCC6 Missense_Mutation p.C585F 0.52 deleterious(0) probably_damaging(0.989) TCGA-NC-A5HG-01 22 46657009 46657009 G A PKDREJ Silent p.L737L 0.24 TCGA-NC-A5HG-01 22 47022827 47022827 C T GRAMD4 Missense_Mutation p.S44L 0.27 tolerated(0.2) benign(0.001) TCGA-NC-A5HG-01 2 10050881 10050881 A C TAF1B Missense_Mutation p.L324F 0.41 tolerated(0.17) benign(0.006) TCGA-NC-A5HG-01 2 101099726 101099726 A T NMS Nonstop_Mutation p.*154Cext*? 0.33 TCGA-NC-A5HG-01 2 113539247 113539247 G T IL1A Silent p.R85R 0.38 TCGA-NC-A5HG-01 2 133175256 133175256 C G GPR39 Missense_Mutation p.S214C 0.34 deleterious(0) probably_damaging(0.969) TCGA-NC-A5HG-01 2 133539521 133539521 G C NCKAP5 Silent p.L1621L 0.33 TCGA-NC-A5HG-01 2 136719010 136719010 C T DARS Silent p.A92A 0.47 TCGA-NC-A5HG-01 2 141110614 141110614 G T LRP1B Missense_Mutation p.T3853K 0.47 possibly_damaging(0.728) TCGA-NC-A5HG-01 2 141460004 141460004 C T LRP1B Missense_Mutation p.D2048N 0.46 possibly_damaging(0.831) TCGA-NC-A5HG-01 2 155098587 155098587 T C GALNT13 Missense_Mutation p.V119A 0.12 deleterious(0) probably_damaging(0.972) TCGA-NC-A5HG-01 2 158287111 158287111 G A CYTIP Nonsense_Mutation p.Q146* 0.26 TCGA-NC-A5HG-01 2 163256908 163256908 A G KCNH7 Missense_Mutation p.L733P 0.09 deleterious(0) probably_damaging(0.996) TCGA-NC-A5HG-01 2 166226739 166226739 A G SCN2A Missense_Mutation p.K1260R 0.33 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HG-01 2 168103523 168103523 C T XIRP2 Missense_Mutation p.S1874L 0.30 probably_damaging(0.982) TCGA-NC-A5HG-01 2 168115669 168115669 G A XIRP2 3'UTR 0.06 TCGA-NC-A5HG-01 2 170367335 170367335 G A KLHL41 Silent p.V349V 0.09 TCGA-NC-A5HG-01 2 170428528 170428528 T G FASTKD1 Silent p.T4T 0.28 TCGA-NC-A5HG-01 2 179414559 179414559 G C TTN Silent p.T30630T 0.45 TCGA-NC-A5HG-01 2 179426336 179426336 A T TTN Missense_Mutation p.W28175R 0.29 TCGA-NC-A5HG-01 2 179442400 179442400 G T TTN Missense_Mutation p.A22918E 0.41 TCGA-NC-A5HG-01 2 179463615 179463615 G A TTN Missense_Mutation p.A18941V 0.39 TCGA-NC-A5HG-01 2 179481347 179481347 A C TTN Missense_Mutation p.S16057R 0.46 TCGA-NC-A5HG-01 2 179571660 179571660 G A TTN Missense_Mutation p.A9688V 0.70 TCGA-NC-A5HG-01 2 179596454 179596454 G A TTN Silent p.G5716G 0.42 TCGA-NC-A5HG-01 2 179616332 179616332 G T TTN Intron 0.35 TCGA-NC-A5HG-01 2 179656850 179656850 A T TTN Silent p.T537T 0.48 TCGA-NC-A5HG-01 2 180016048 180016048 C T SESTD1 Missense_Mutation p.G147E 0.49 deleterious(0) probably_damaging(1) TCGA-NC-A5HG-01 2 183699553 183699553 T C FRZB 3'UTR 0.33 TCGA-NC-A5HG-01 2 188211090 188211090 T C CALCRL Missense_Mutation p.K403E 0.45 deleterious(0) benign(0.089) TCGA-NC-A5HG-01 2 196636422 196636422 T C DNAH7 Missense_Mutation p.I3799V 0.47 tolerated(0.54) benign(0.252) TCGA-NC-A5HG-01 2 198570693 198570693 A T MARS2 Silent p.P188P 0.43 TCGA-NC-A5HG-01 2 200826613 200826613 G C C2orf47 Missense_Mutation p.Q253H 0.19 deleterious(0.01) probably_damaging(0.981) TCGA-NC-A5HG-01 2 204591466 204591466 C T CD28 Missense_Mutation p.L55F 0.13 deleterious(0) probably_damaging(1) TCGA-NC-A5HG-01 2 204591469 204591469 C A CD28 Missense_Mutation p.H56N 0.13 tolerated(0.17) benign(0.036) TCGA-NC-A5HG-01 2 207454162 207454162 G A ADAM23 Missense_Mutation p.E628K 0.27 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HG-01 2 215840642 215840642 G T ABCA12 Missense_Mutation p.Q1750K 0.38 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HG-01 2 218747069 218747069 C T TNS1 Missense_Mutation p.G313S 0.15 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HG-01 2 219544382 219544382 C - STK36 Frame_Shift_Del p.K295Rfs*8 0.28 TCGA-NC-A5HG-01 2 220405841 220405841 G A CHPF Missense_Mutation p.H299Y 0.45 tolerated(0.92) benign(0.002) TCGA-NC-A5HG-01 2 222429090 222429090 C A EPHA4 Nonsense_Mutation p.E62* 0.38 TCGA-NC-A5HG-01 2 228388563 228388563 A C AGFG1 Silent p.T154T 0.22 TCGA-NC-A5HG-01 2 231149068 231149068 G C SP140 Missense_Mutation p.K502N 0.30 deleterious(0) probably_damaging(0.994) TCGA-NC-A5HG-01 2 235950798 235950798 A T SH3BP4 Missense_Mutation p.Y462F 0.36 tolerated(0.6) benign(0.008) TCGA-NC-A5HG-01 2 237994550 237994550 G A COPS8 5'UTR 0.46 TCGA-NC-A5HG-01 2 240969019 240969019 G T OR6B2 Silent p.A276A 0.41 TCGA-NC-A5HG-01 2 27275948 27275948 C G AGBL5 Missense_Mutation p.A41G 0.12 tolerated(0.34) benign(0.044) TCGA-NC-A5HG-01 2 27708339 27708339 C T IFT172 Nonsense_Mutation p.W24* 0.48 TCGA-NC-A5HG-01 2 32688310 32688310 C T BIRC6 Missense_Mutation p.T1601I 0.07 benign(0.296) TCGA-NC-A5HG-01 2 40342689 40342689 C G SLC8A1 Missense_Mutation p.V876L 0.47 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HG-01 2 47739477 47739477 C T KCNK12 3'Flank 0.56 TCGA-NC-A5HG-01 2 69585587 69585587 T G GFPT1 Missense_Mutation p.K139N 0.41 tolerated(0.08) benign(0.098) TCGA-NC-A5HG-01 2 70457908 70457908 C T TIA1 Missense_Mutation p.G68R 0.05 deleterious(0.03) probably_damaging(0.928) TCGA-NC-A5HG-01 2 71043863 71043863 C A CLEC4F Missense_Mutation p.R217I 0.18 deleterious(0.02) probably_damaging(0.962) TCGA-NC-A5HG-01 2 74143839 74143839 G A ACTG2 Missense_Mutation p.D312N 0.09 deleterious_low_confidence(0.02) benign(0.037) TCGA-NC-A5HG-01 2 79348720 79348720 C A REG1A Silent p.R33R 0.36 TCGA-NC-A5HG-01 2 80530930 80530930 C T LRRTM1 Silent p.L5L 0.30 TCGA-NC-A5HG-01 2 86073536 86073536 G A ST3GAL5 Silent p.F271F 0.15 TCGA-NC-A5HG-01 2 88367393 88367393 G T SMYD1 Missense_Mutation p.G4W 0.39 deleterious_low_confidence(0) possibly_damaging(0.798) TCGA-NC-A5HG-01 2 99012944 99012944 T C CNGA3 Silent p.V437V 0.55 TCGA-NC-A5HG-01 3 121438509 121438509 T G GOLGB1 Missense_Mutation p.E252A 0.37 probably_damaging(0.972) TCGA-NC-A5HG-01 3 121448741 121448741 G A GOLGB1 Nonsense_Mutation p.Q74* 0.44 TCGA-NC-A5HG-01 3 122514279 122514279 C A DIRC2 Silent p.R80R 0.41 TCGA-NC-A5HG-01 3 126740943 126740943 G A PLXNA1 Missense_Mutation p.E1352K 0.33 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HG-01 3 12856803 12856804 - AAC CAND2 In_Frame_Ins p.N391dup 0.61 TCGA-NC-A5HG-01 3 1320190 1320190 G C CNTN6 Missense_Mutation p.G151A 0.41 deleterious(0.04) possibly_damaging(0.66) TCGA-NC-A5HG-01 3 132224162 132224162 A T DNAJC13 Missense_Mutation p.N1634I 0.39 deleterious(0) possibly_damaging(0.863) TCGA-NC-A5HG-01 3 134670836 134670836 T C EPHB1 Silent p.P249P 0.42 TCGA-NC-A5HG-01 3 137484280 137484280 C T SOX14 Silent p.Y218Y 0.19 TCGA-NC-A5HG-01 3 14489364 14489364 G - SLC6A6 Intron 0.50 TCGA-NC-A5HG-01 3 146173039 146173039 C T PLSCR2 Missense_Mutation p.C176Y 0.49 deleterious(0) probably_damaging(0.979) TCGA-NC-A5HG-01 3 147128379 147128379 C A ZIC1 Missense_Mutation p.N160K 0.45 deleterious(0) probably_damaging(0.991) TCGA-NC-A5HG-01 3 148459572 148459572 C G AGTR1 Missense_Mutation p.F250L 0.12 tolerated(0.5) possibly_damaging(0.615) TCGA-NC-A5HG-01 3 151163778 151163778 T C IGSF10 Missense_Mutation p.T1331A 0.40 tolerated(0.17) benign(0.009) TCGA-NC-A5HG-01 3 15686411 15686411 G A BTD Missense_Mutation p.A350T 0.34 tolerated(0.3) benign(0.005) TCGA-NC-A5HG-01 3 15711773 15711773 C T ANKRD28 3'UTR 0.61 TCGA-NC-A5HG-01 3 160285685 160285685 G T KPNA4 5'Flank 0.23 TCGA-NC-A5HG-01 3 160285686 160285686 G T KPNA4 5'Flank 0.23 TCGA-NC-A5HG-01 3 164906906 164906906 G T SLITRK3 Silent p.V571V 0.36 TCGA-NC-A5HG-01 3 180685880 180685880 G C FXR1 Missense_Mutation p.E414Q 0.22 deleterious(0.04) probably_damaging(0.982) TCGA-NC-A5HG-01 3 184002807 184002807 G A ECE2 Silent p.L472L 0.06 TCGA-NC-A5HG-01 3 184062608 184062608 C T FAM131A Silent p.P317P 0.22 TCGA-NC-A5HG-01 3 184290655 184290655 C A EPHB3 Missense_Mutation p.P183T 0.46 deleterious(0.01) probably_damaging(1) TCGA-NC-A5HG-01 3 184297719 184297719 C G EPHB3 Silent p.L723L 0.38 TCGA-NC-A5HG-01 3 195702717 195702717 T A SDHAP1 RNA 0.17 TCGA-NC-A5HG-01 3 25639856 25639880 TTTACTTCTTTCCTAGCCCGACCGG - TOP2B Frame_Shift_Del p.T1595Nfs*55 0.28 TCGA-NC-A5HG-01 3 37067252 37067252 C T MLH1 Missense_Mutation p.S388F 0.42 deleterious(0.04) benign(0.024) TCGA-NC-A5HG-01 3 38888132 38888132 C G SCN11A 3'UTR 0.68 TCGA-NC-A5HG-01 3 39373847 39373847 G A CCR8 Missense_Mutation p.V9M 0.05 tolerated(0.21) benign(0.003) TCGA-NC-A5HG-01 3 42728118 42728118 C A KLHL40 Missense_Mutation p.N336K 0.43 deleterious(0) probably_damaging(0.947) TCGA-NC-A5HG-01 3 42916756 42916756 A T CYP8B1 Missense_Mutation p.L185M 0.20 deleterious(0) probably_damaging(1) TCGA-NC-A5HG-01 3 48609584 48609584 T A COL7A1 Silent p.G2333G 0.25 TCGA-NC-A5HG-01 3 49006033 49006033 C T ARIH2 Missense_Mutation p.P202L 0.20 tolerated(0.09) benign(0.036) TCGA-NC-A5HG-01 3 49721764 49721764 G A MST1 Missense_Mutation p.P667S 0.09 tolerated(0.34) benign(0.027) TCGA-NC-A5HG-01 3 5025432 5025432 C T BHLHE40 3'UTR 0.24 TCGA-NC-A5HG-01 3 62357319 62357319 G A FEZF2 Silent p.L292L 0.23 TCGA-NC-A5HG-01 3 69167908 69167908 G T LMOD3 Missense_Mutation p.T533N 0.44 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HG-01 3 87325521 87325521 G A POU1F1 Missense_Mutation p.A31V 0.27 deleterious_low_confidence(0) possibly_damaging(0.557) TCGA-NC-A5HG-01 3 9032313 9032313 G C SRGAP3 Missense_Mutation p.I923M 0.15 deleterious(0.01) benign(0.424) TCGA-NC-A5HG-01 4 103505915 103505915 G A NFKB1 Missense_Mutation p.R335Q 0.47 deleterious(0.01) possibly_damaging(0.707) TCGA-NC-A5HG-01 4 106601061 106601061 G T ARHGEF38 3'UTR 0.72 TCGA-NC-A5HG-01 4 115544048 115544048 C A UGT8 Nonsense_Mutation p.Y4* 0.76 TCGA-NC-A5HG-01 4 115891643 115891643 G A NDST4 Silent p.L388L 0.97 TCGA-NC-A5HG-01 4 122250530 122250530 C A QRFPR Missense_Mutation p.R412L 0.83 deleterious_low_confidence(0.03) benign(0.027) TCGA-NC-A5HG-01 4 13605153 13605153 G A BOD1L1 Missense_Mutation p.S1124F 0.35 benign(0.01) TCGA-NC-A5HG-01 4 143003204 143003204 T G INPP4B Silent p.R874R 0.89 TCGA-NC-A5HG-01 4 146686739 146686739 C T ZNF827 Silent p.G1004G 0.13 TCGA-NC-A5HG-01 4 154625826 154625826 A C TLR2 Silent p.A589A 0.87 TCGA-NC-A5HG-01 4 155468977 155468977 G A PLRG1 Missense_Mutation p.R49C 0.26 deleterious(0) possibly_damaging(0.591) TCGA-NC-A5HG-01 4 156757980 156757980 C A ASIC5 Missense_Mutation p.V366L 0.83 tolerated(0.58) benign(0.008) TCGA-NC-A5HG-01 4 156835479 156835479 A T TDO2 Missense_Mutation p.K244I 0.11 tolerated(0.17) benign(0.121) TCGA-NC-A5HG-01 4 158091904 158091904 A C GLRB 3'UTR 0.50 TCGA-NC-A5HG-01 4 15938253 15938253 C T FGFBP1 Translation_Start_Site p.M1? 0.29 deleterious(0) benign(0.019) TCGA-NC-A5HG-01 4 160189250 160189250 C T RAPGEF2 5'UTR 0.95 TCGA-NC-A5HG-01 4 164058362 164058362 G C NAF1 Missense_Mutation p.P307A 0.14 deleterious(0.01) probably_damaging(0.932) TCGA-NC-A5HG-01 4 166403424 166403424 T C CPE Missense_Mutation p.W235R 0.79 deleterious(0) probably_damaging(1) TCGA-NC-A5HG-01 4 176622918 176622918 C G GPM6A Missense_Mutation p.G13A 0.37 deleterious(0.01) possibly_damaging(0.669) TCGA-NC-A5HG-01 4 178911648 178911648 A T LINC01098 Missense_Mutation p.T106S 0.50 deleterious_low_confidence(0) benign(0.002) TCGA-NC-A5HG-01 4 187005830 187005830 A G TLR3 Missense_Mutation p.I840V 0.61 deleterious(0.04) benign(0.181) TCGA-NC-A5HG-01 4 187088243 187088243 C A FAM149A Missense_Mutation p.T429K 0.49 deleterious(0) probably_damaging(0.973) TCGA-NC-A5HG-01 4 187455440 187455440 C G MTNR1A Missense_Mutation p.W152C 0.79 deleterious(0.01) probably_damaging(0.952) TCGA-NC-A5HG-01 4 187524796 187524796 T - FAT1 Frame_Shift_Del p.V3629Cfs*11 0.42 TCGA-NC-A5HG-01 4 1902373 1902373 C T WHSC1 5'UTR 0.74 TCGA-NC-A5HG-01 4 24572426 24572426 G A DHX15 Silent p.P184P 0.62 TCGA-NC-A5HG-01 4 25370828 25370828 C T ZCCHC4 3'UTR 0.22 TCGA-NC-A5HG-01 4 36230648 36230648 G C ARAP2 Missense_Mutation p.P154R 0.69 tolerated_low_confidence(0.16) benign(0.004) TCGA-NC-A5HG-01 4 41749438 41749438 C G PHOX2B Missense_Mutation p.E119D 0.70 deleterious(0) probably_damaging(0.994) TCGA-NC-A5HG-01 4 46995361 46995361 C A GABRA4 Silent p.A27A 0.75 TCGA-NC-A5HG-01 4 48604074 48604074 C T FRYL Nonsense_Mutation p.W333* 0.41 TCGA-NC-A5HG-01 4 62761510 62761510 C A LPHN3 Silent p.L547L 0.65 TCGA-NC-A5HG-01 4 69817299 69817299 C T UGT2A3 Silent p.K60K 0.87 TCGA-NC-A5HG-01 4 71200960 71200960 G A CABS1 Silent p.L68L 0.12 TCGA-NC-A5HG-01 4 88901274 88901274 C T SPP1 Missense_Mutation p.P57L 0.05 tolerated(0.11) possibly_damaging(0.908) TCGA-NC-A5HG-01 4 88989064 88989064 G C PKD2 Missense_Mutation p.L791F 0.06 deleterious(0.02) possibly_damaging(0.901) TCGA-NC-A5HG-01 4 89199491 89199491 T A PPM1K Missense_Mutation p.K82M 0.85 tolerated(0.06) benign(0.313) TCGA-NC-A5HG-01 4 94344108 94344108 C T GRID2 Missense_Mutation p.L512F 0.14 deleterious(0.03) probably_damaging(0.913) TCGA-NC-A5HG-01 4 95539240 95539240 G A PDLIM5 Missense_Mutation p.G365S 0.48 tolerated(1) benign(0.001) TCGA-NC-A5HG-01 5 109110566 109110566 A G MAN2A1 Missense_Mutation p.D425G 0.79 deleterious(0.02) benign(0.269) TCGA-NC-A5HG-01 5 11199575 11199575 G C CTNND2 Missense_Mutation p.R654G 0.18 deleterious(0) probably_damaging(0.987) TCGA-NC-A5HG-01 5 112363080 112363080 G A MCC Silent p.T993T 0.68 TCGA-NC-A5HG-01 5 1214145 1214145 G A SLC6A19 Silent p.G284G 0.21 TCGA-NC-A5HG-01 5 13762879 13762879 T A DNAH5 Missense_Mutation p.K3411N 0.17 possibly_damaging(0.728) TCGA-NC-A5HG-01 5 140062765 140062765 C T HARS Missense_Mutation p.E74K 0.09 tolerated(0.1) possibly_damaging(0.477) TCGA-NC-A5HG-01 5 140563871 140563871 G C PCDHB16 Silent p.A579A 0.84 TCGA-NC-A5HG-01 5 1466943 1466943 C A LPCAT1 Silent p.T447T 0.33 TCGA-NC-A5HG-01 5 148753999 148753999 C T IL17B Missense_Mutation p.R159H 0.75 deleterious(0.02) probably_damaging(1) TCGA-NC-A5HG-01 5 153190627 153190627 C T GRIA1 Missense_Mutation p.R865W 0.75 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-NC-A5HG-01 5 16668479 16668479 G A MYO10 Silent p.F1994F 0.16 TCGA-NC-A5HG-01 5 16680158 16680158 C G MYO10 Missense_Mutation p.K1480N 0.41 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HG-01 5 172396576 172396576 G A RPL26L1 3'UTR 0.16 TCGA-NC-A5HG-01 5 176631267 176631267 C T NSD1 Nonsense_Mutation p.Q404* 0.64 TCGA-NC-A5HG-01 5 26903931 26903931 T C CDH9 Missense_Mutation p.T272A 0.27 tolerated(0.42) benign(0.022) TCGA-NC-A5HG-01 5 33588763 33588763 G T ADAMTS12 Missense_Mutation p.L936I 0.16 tolerated(0.73) benign(0.002) TCGA-NC-A5HG-01 5 35709226 35709226 G T SPEF2 Intron 0.19 TCGA-NC-A5HG-01 5 35807050 35807050 C T SPEF2 Missense_Mutation p.A1751V 0.23 tolerated(0.28) benign(0.183) TCGA-NC-A5HG-01 5 36972120 36972120 C T NIPBL Missense_Mutation p.A282V 0.18 deleterious_low_confidence(0.05) probably_damaging(0.996) TCGA-NC-A5HG-01 5 37164374 37164374 C A C5orf42 Splice_Site p.X2530_splice 0.21 TCGA-NC-A5HG-01 5 37173952 37173952 G A C5orf42 Nonsense_Mutation p.Q2026* 0.38 TCGA-NC-A5HG-01 5 38482054 38482054 C G LIFR Silent p.S979S 0.15 TCGA-NC-A5HG-01 5 40999804 40999804 G T MROH2B Silent p.I1520I 0.36 TCGA-NC-A5HG-01 5 41058254 41058254 G T MROH2B Silent p.R223R 0.21 TCGA-NC-A5HG-01 5 52211384 52211384 G C ITGA1 Missense_Mutation p.D650H 0.66 deleterious(0) probably_damaging(0.97) TCGA-NC-A5HG-01 5 56777792 56777792 A C ACTBL2 Missense_Mutation p.V248G 0.28 deleterious_low_confidence(0) possibly_damaging(0.673) TCGA-NC-A5HG-01 5 6372630 6372630 G A MED10 Missense_Mutation p.H132Y 0.37 tolerated(0.27) benign(0.024) TCGA-NC-A5HG-01 5 74721263 74721263 C T COL4A3BP Missense_Mutation p.R301K 0.21 tolerated(0.3) possibly_damaging(0.573) TCGA-NC-A5HG-01 5 79026543 79026543 C G CMYA5 Missense_Mutation p.S652C 0.67 probably_damaging(0.926) TCGA-NC-A5HG-01 5 9197333 9197333 C T SEMA5A Missense_Mutation p.E339K 0.26 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HG-01 6 10877395 10877395 G T GCM2 Missense_Mutation p.D107E 0.40 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HG-01 6 12120593 12120593 C T HIVEP1 Missense_Mutation p.P189S 0.39 tolerated(0.55) benign(0.004) TCGA-NC-A5HG-01 6 127608487 127608487 G A RNF146 Silent p.L243L 0.13 TCGA-NC-A5HG-01 6 131897866 131897866 A G ARG1 Missense_Mutation p.K41E 0.85 tolerated(0.92) benign(0.001) TCGA-NC-A5HG-01 6 131908882 131908882 C G MED23 Missense_Mutation p.M1348I 0.41 tolerated_low_confidence(0.66) benign(0) TCGA-NC-A5HG-01 6 132030975 132030975 C A CTAGE9 Nonsense_Mutation p.E395* 0.31 TCGA-NC-A5HG-01 6 146126301 146126301 G A FBXO30 Missense_Mutation p.A414V 0.74 tolerated(0.31) benign(0.003) TCGA-NC-A5HG-01 6 147705987 147705987 G T STXBP5 3'Flank 0.50 TCGA-NC-A5HG-01 6 150004343 150004343 C A LATS1 Nonsense_Mutation p.E628* 0.52 TCGA-NC-A5HG-01 6 150004344 150004344 C G LATS1 Missense_Mutation p.R627S 0.53 deleterious(0.02) benign(0.109) TCGA-NC-A5HG-01 6 154360699 154360699 C T OPRM1 Missense_Mutation p.P100L 0.96 deleterious_low_confidence(0) possibly_damaging(0.756) TCGA-NC-A5HG-01 6 158924460 158924460 G T TULP4 Silent p.L1255L 0.83 TCGA-NC-A5HG-01 6 167549800 167549800 T A CCR6 Missense_Mutation p.S28T 0.43 tolerated(0.69) benign(0) TCGA-NC-A5HG-01 6 26216789 26216789 T C HIST1H2BG Missense_Mutation p.K28R 0.34 tolerated_low_confidence(0.07) unknown(0) TCGA-NC-A5HG-01 6 27840022 27840022 C T HIST1H3I Silent p.K24K 0.40 TCGA-NC-A5HG-01 6 28268702 28268702 C T PGBD1 Silent p.L357L 0.40 TCGA-NC-A5HG-01 6 31608203 31608203 C T BAG6 Missense_Mutation p.A1003T 0.48 tolerated(0.18) benign(0.002) TCGA-NC-A5HG-01 6 31750599 31750599 G A VARS Missense_Mutation p.H596Y 0.34 deleterious(0) probably_damaging(1) TCGA-NC-A5HG-01 6 32158963 32158963 C T GPSM3 3'UTR 0.40 TCGA-NC-A5HG-01 6 32813509 32813509 G A TAP1 Silent p.L758L 0.44 TCGA-NC-A5HG-01 6 32976131 32976131 C A HLA-DOA Intron 0.36 TCGA-NC-A5HG-01 6 3298385 3298385 G A SLC22A23 Missense_Mutation p.L384F 0.13 tolerated(0.64) benign(0.142) TCGA-NC-A5HG-01 6 37328296 37328296 C T RNF8 Silent p.N62N 0.16 TCGA-NC-A5HG-01 6 38840734 38840734 G C DNAH8 Missense_Mutation p.E2213D 0.56 probably_damaging(1) TCGA-NC-A5HG-01 6 39847065 39847065 C A DAAM2 Missense_Mutation p.P553T 0.36 tolerated(0.38) possibly_damaging(0.908) TCGA-NC-A5HG-01 6 4069893 4069893 C T FAM217A Silent p.L188L 0.26 TCGA-NC-A5HG-01 6 41250333 41250333 C G TREM1 Missense_Mutation p.C69S 0.35 tolerated(0.43) benign(0.005) TCGA-NC-A5HG-01 6 41900347 41900347 G A BYSL Missense_Mutation p.R406Q 0.07 tolerated(0.08) benign(0.413) TCGA-NC-A5HG-01 6 43181614 43181614 G T CUL9 Silent p.G1884G 0.34 TCGA-NC-A5HG-01 6 43181615 43181615 G T CUL9 Nonsense_Mutation p.E1885* 0.33 TCGA-NC-A5HG-01 6 4716063 4716063 A T CDYL Missense_Mutation p.K17N 0.34 tolerated_low_confidence(0.1) benign(0.403) TCGA-NC-A5HG-01 6 49754968 49754968 G T PGK2 5'UTR 0.43 TCGA-NC-A5HG-01 6 56472735 56472735 C T DST Intron 0.30 TCGA-NC-A5HG-01 6 57006841 57006841 G T ZNF451 Missense_Mutation p.V318L 0.40 tolerated(0.18) probably_damaging(0.99) TCGA-NC-A5HG-01 6 7585271 7585271 G C DSP Missense_Mutation p.K2592N 0.13 possibly_damaging(0.584) TCGA-NC-A5HG-01 7 100075445 100075445 G A TSC22D4 Missense_Mutation p.R73W 0.08 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HG-01 7 100345796 100345796 C T ZAN Missense_Mutation p.P354S 0.17 probably_damaging(0.999) TCGA-NC-A5HG-01 7 100416223 100416223 G A EPHB4 Silent p.P447P 0.15 TCGA-NC-A5HG-01 7 100457530 100457530 G C SLC12A9 Missense_Mutation p.G334A 0.13 tolerated(0.69) benign(0.102) TCGA-NC-A5HG-01 7 100459043 100459043 C T SLC12A9 Missense_Mutation p.T458I 0.10 deleterious(0) probably_damaging(0.967) TCGA-NC-A5HG-01 7 103141280 103141280 C A RELN Missense_Mutation p.C2860F 0.14 deleterious(0.01) possibly_damaging(0.61) TCGA-NC-A5HG-01 7 103155769 103155769 G T RELN Nonsense_Mutation p.S2661* 0.10 TCGA-NC-A5HG-01 7 104749549 104749549 A G KMT2E Missense_Mutation p.D1210G 0.46 deleterious_low_confidence(0.04) benign(0.003) TCGA-NC-A5HG-01 7 106508138 106508138 G A PIK3CG Silent p.L44L 0.90 TCGA-NC-A5HG-01 7 1098090 1098090 G C GPR146 Missense_Mutation p.K313N 0.10 deleterious(0.02) possibly_damaging(0.649) TCGA-NC-A5HG-01 7 122840025 122840025 G T SLC13A1 5'UTR 0.83 TCGA-NC-A5HG-01 7 123332894 123332894 C A WASL Missense_Mutation p.G285V 0.19 tolerated(0.47) unknown(0) TCGA-NC-A5HG-01 7 128037026 128037026 G C IMPDH1 Missense_Mutation p.I375M 0.20 deleterious(0.03) benign(0.257) TCGA-NC-A5HG-01 7 128503036 128503036 G A ATP6V1F Silent p.G26G 0.81 TCGA-NC-A5HG-01 7 133979655 133979655 A T SLC35B4 Missense_Mutation p.M309K 0.87 deleterious(0) benign(0.116) TCGA-NC-A5HG-01 7 135384160 135384160 G T SLC13A4 Missense_Mutation p.T283N 0.07 deleterious(0) probably_damaging(1) TCGA-NC-A5HG-01 7 138453558 138453558 C A ATP6V0A4 Silent p.L86L 0.53 TCGA-NC-A5HG-01 7 143057266 143057266 G A FAM131B Intron 0.14 TCGA-NC-A5HG-01 7 143095870 143095870 C T EPHA1 Missense_Mutation p.G387E 0.15 tolerated(0.28) benign(0.054) TCGA-NC-A5HG-01 7 143421894 143421894 G T FAM115C 3'UTR 0.62 TCGA-NC-A5HG-01 7 149522975 149522975 G T SSPO RNA 0.80 TCGA-NC-A5HG-01 7 150418008 150418008 G A GIMAP1 Missense_Mutation p.D306N 0.10 deleterious_low_confidence(0.02) benign(0.195) TCGA-NC-A5HG-01 7 150936163 150936163 C T SMARCD3 3'UTR 0.84 TCGA-NC-A5HG-01 7 151944989 151944989 G A KMT2C Nonsense_Mutation p.Q844* 0.39 TCGA-NC-A5HG-01 7 24708216 24708216 C T MPP6 Nonsense_Mutation p.R351* 0.88 TCGA-NC-A5HG-01 7 2552326 2552326 A G LFNG Missense_Mutation p.Y13C 0.92 deleterious_low_confidence(0.02) unknown(0) TCGA-NC-A5HG-01 7 2577666 2577666 C T BRAT1 3'UTR 0.79 TCGA-NC-A5HG-01 7 30065984 30065984 C G FKBP14 Missense_Mutation p.L47F 0.13 deleterious(0.01) benign(0.178) TCGA-NC-A5HG-01 7 31692386 31692386 T A CCDC129 Intron 0.82 TCGA-NC-A5HG-01 7 31864483 31864483 C T PDE1C Silent p.S528S 0.37 TCGA-NC-A5HG-01 7 36895042 36895042 C T ELMO1 3'UTR 0.78 TCGA-NC-A5HG-01 7 38389067 38389067 G C TRGV5 Silent p.L81L 0.20 TCGA-NC-A5HG-01 7 44807254 44807254 C T ZMIZ2 3'UTR 0.82 TCGA-NC-A5HG-01 7 45957018 45957018 C T IGFBP3 Missense_Mutation p.E148K 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-NC-A5HG-01 7 48316089 48316089 C G ABCA13 Missense_Mutation p.L2276V 0.17 benign(0.15) TCGA-NC-A5HG-01 7 53103901 53103901 G A POM121L12 Silent p.L179L 0.89 TCGA-NC-A5HG-01 7 5391565 5391565 G A TNRC18 Silent p.P1785P 0.84 TCGA-NC-A5HG-01 7 54819988 54819988 G C SEC61G 3'UTR 0.27 TCGA-NC-A5HG-01 7 6175579 6175579 C T USP42 Missense_Mutation p.R184W 0.14 deleterious(0) probably_damaging(0.93) TCGA-NC-A5HG-01 7 6730580 6730580 C G ZNF12 Missense_Mutation p.E665Q 0.19 deleterious(0.04) possibly_damaging(0.7) TCGA-NC-A5HG-01 7 70597839 70597839 G T WBSCR17 Silent p.A17A 0.86 TCGA-NC-A5HG-01 7 72884808 72884808 G C BAZ1B Missense_Mutation p.L867V 0.11 tolerated(0.18) benign(0.03) TCGA-NC-A5HG-01 7 82579471 82579471 T C PCLO Missense_Mutation p.D3478G 0.12 unknown(0) TCGA-NC-A5HG-01 7 82582344 82582344 G A PCLO Missense_Mutation p.S2642F 0.26 unknown(0) TCGA-NC-A5HG-01 7 83016306 83016306 C G SEMA3E Missense_Mutation p.Q576H 0.09 tolerated(0.16) probably_damaging(0.935) TCGA-NC-A5HG-01 7 87032557 87032557 G A ABCB4 Missense_Mutation p.S1183L 0.15 deleterious(0) probably_damaging(1) TCGA-NC-A5HG-01 7 91670099 91670099 C T AKAP9 Nonsense_Mutation p.Q1602* 0.80 TCGA-NC-A5HG-01 7 98589793 98589793 C T TRRAP Missense_Mutation p.P3268S 0.11 benign(0.443) TCGA-NC-A5HG-01 8 104898085 104898085 G C RIMS2 Missense_Mutation p.G420R 0.13 deleterious_low_confidence(0) probably_damaging(1) TCGA-NC-A5HG-01 8 110457196 110457196 T A PKHD1L1 Missense_Mutation p.C1700S 0.72 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HG-01 8 116616379 116616379 G A TRPS1 Missense_Mutation p.S606F 0.15 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-NC-A5HG-01 8 121262983 121262983 C A COL14A1 Silent p.A910A 0.43 TCGA-NC-A5HG-01 8 127569631 127569631 C T FAM84B Missense_Mutation p.G2S 0.24 deleterious(0) possibly_damaging(0.846) TCGA-NC-A5HG-01 8 132980614 132980614 G A EFR3A Missense_Mutation p.V310I 0.04 tolerated(0.42) benign(0.007) TCGA-NC-A5HG-01 8 133645100 133645100 C G LRRC6 Missense_Mutation p.R180P 0.11 deleterious(0) probably_damaging(0.991) TCGA-NC-A5HG-01 8 133851818 133851818 G A PHF20L1 Missense_Mutation p.G793E 0.12 tolerated(0.1) benign(0.17) TCGA-NC-A5HG-01 8 133858048 133858048 C T PHF20L1 Silent p.F978F 0.34 TCGA-NC-A5HG-01 8 141712737 141712737 G A PTK2 Missense_Mutation p.L767F 0.38 tolerated(0.19) benign(0.119) TCGA-NC-A5HG-01 8 145722674 145722674 C G PPP1R16A Missense_Mutation p.Q33E 0.49 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HG-01 8 146067426 146067426 G A ZNF7 Missense_Mutation p.G312R 0.51 deleterious(0) probably_damaging(1) TCGA-NC-A5HG-01 8 24366176 24366176 G C ADAM7 3'UTR 0.75 TCGA-NC-A5HG-01 8 25156570 25156570 A T DOCK5 Silent p.A239A 0.34 TCGA-NC-A5HG-01 8 35563464 35563464 G C UNC5D Missense_Mutation p.E368Q 0.16 deleterious(0.05) benign(0.205) TCGA-NC-A5HG-01 8 38273408 38273408 C G FGFR1 Missense_Mutation p.E643Q 0.06 tolerated(0.09) possibly_damaging(0.746) TCGA-NC-A5HG-01 8 38373959 38373959 C A C8orf86 Silent p.V129V 0.32 TCGA-NC-A5HG-01 8 39467078 39467078 C G ADAM18 Silent p.L114L 0.13 TCGA-NC-A5HG-01 8 52258493 52258493 C T PXDNL Missense_Mutation p.G1306R 0.14 tolerated(0.15) possibly_damaging(0.5) TCGA-NC-A5HG-01 8 56015332 56015332 C T XKR4 Missense_Mutation p.A95V 0.32 tolerated(0.11) benign(0.001) TCGA-NC-A5HG-01 8 56922598 56922598 T A LYN Missense_Mutation p.F490I 0.33 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HG-01 8 59352288 59352288 G A UBXN2B Silent p.L210L 0.58 TCGA-NC-A5HG-01 8 63927983 63927983 C G GGH Missense_Mutation p.E289Q 0.16 tolerated(0.44) benign(0.001) TCGA-NC-A5HG-01 8 70570742 70570742 G T SULF1 Missense_Mutation p.G863V 0.11 deleterious_low_confidence(0.04) benign(0.049) TCGA-NC-A5HG-01 8 8234647 8234647 A C SGK223 Silent p.P424P 0.27 TCGA-NC-A5HG-01 8 86019573 86019573 G A LRRCC1 Missense_Mutation p.E15K 0.44 deleterious_low_confidence(0.02) benign(0.003) TCGA-NC-A5HG-01 8 89068403 89068403 G T MMP16 Silent p.A442A 0.10 TCGA-NC-A5HG-01 8 92346601 92346601 C T SLC26A7 Missense_Mutation p.L241F 0.37 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HG-01 8 94768054 94768054 G A TMEM67 Missense_Mutation p.G91E 0.35 deleterious(0.02) benign(0.091) TCGA-NC-A5HG-01 9 101498792 101498792 G A ANKS6 3'UTR 0.50 TCGA-NC-A5HG-01 9 101798479 101798479 G A COL15A1 Missense_Mutation p.G773R 0.12 deleterious(0) possibly_damaging(0.619) TCGA-NC-A5HG-01 9 117840372 117840372 C A TNC Missense_Mutation p.V842L 0.75 tolerated(0.27) benign(0.341) TCGA-NC-A5HG-01 9 133495783 133495783 C T FUBP3 Nonsense_Mutation p.Q237* 0.77 TCGA-NC-A5HG-01 9 134514145 134514145 G A RAPGEF1 Silent p.Y177Y 0.31 TCGA-NC-A5HG-01 9 136030697 136030697 G A GBGT1 Missense_Mutation p.P76L 0.74 tolerated(0.08) benign(0.21) TCGA-NC-A5HG-01 9 138712696 138712696 A T CAMSAP1 Missense_Mutation p.F1271I 0.65 deleterious(0) possibly_damaging(0.888) TCGA-NC-A5HG-01 9 139733438 139733438 G A RABL6 Missense_Mutation p.G454E 0.79 tolerated(0.66) benign(0) TCGA-NC-A5HG-01 9 139848385 139848385 C A LCN12 Missense_Mutation p.S139R 0.56 tolerated(0.05) possibly_damaging(0.807) TCGA-NC-A5HG-01 9 15784652 15784652 A T CCDC171 Missense_Mutation p.E1076V 0.60 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HG-01 9 18887839 18887839 C A ADAMTSL1 Silent p.I1420I 0.50 TCGA-NC-A5HG-01 9 19619669 19619669 C T SLC24A2 Missense_Mutation p.G331S 0.80 deleterious(0.05) benign(0.178) TCGA-NC-A5HG-01 9 21974730 21974730 C A CDKN2A Nonsense_Mutation p.E33* 0.80 TCGA-NC-A5HG-01 9 32784364 32784364 G A TMEM215 Silent p.R61R 0.76 TCGA-NC-A5HG-01 9 33472404 33472404 C T NOL6 Missense_Mutation p.E21K 0.87 tolerated(0.07) benign(0.007) TCGA-NC-A5HG-01 9 34250659 34250659 C G UBAP1 Missense_Mutation p.L488V 0.33 deleterious(0.01) possibly_damaging(0.884) TCGA-NC-A5HG-01 9 34257533 34257533 C T KIF24 Missense_Mutation p.G691E 0.37 tolerated(0.51) benign(0.015) TCGA-NC-A5HG-01 9 34658626 34658626 C A IL11RA Missense_Mutation p.F252L 0.71 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HG-01 9 37746166 37746166 C T FRMPD1 Silent p.P1379P 0.67 TCGA-NC-A5HG-01 9 73240430 73240430 C G TRPM3 Intron 0.37 TCGA-NC-A5HG-01 9 95481098 95481098 C A BICD2 Missense_Mutation p.G610V 0.71 tolerated(0.46) benign(0.001) TCGA-NC-A5HG-01 9 97522337 97522337 C T C9orf3 Missense_Mutation p.S91L 0.39 deleterious(0.05) benign(0.015) TCGA-NC-A5HG-01 9 98224184 98224184 A G PTCH1 Missense_Mutation p.L886P 0.14 deleterious(0.02) possibly_damaging(0.859) TCGA-NC-A5HG-01 X 102005061 102005061 G A BHLHB9 Missense_Mutation p.E380K 0.39 tolerated(0.11) possibly_damaging(0.805) TCGA-NC-A5HG-01 X 106229348 106229348 G A MORC4 Missense_Mutation p.R131W 0.77 deleterious(0.02) probably_damaging(1) TCGA-NC-A5HG-01 X 122528960 122528960 G T GRIA3 Missense_Mutation p.A298S 0.40 tolerated(0.42) benign(0.031) TCGA-NC-A5HG-01 X 12939567 12939567 G A TLR8 Missense_Mutation p.C803Y 0.09 deleterious(0) probably_damaging(1) TCGA-NC-A5HG-01 X 129506959 129506959 C T SLC25A14 3'UTR 0.89 TCGA-NC-A5HG-01 X 13337142 13337142 C A ATXN3L Silent p.P304P 0.87 TCGA-NC-A5HG-01 X 134991908 134991908 G C SAGE1 Missense_Mutation p.G565R 0.80 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HG-01 X 135328484 135328484 C T MAP7D3 Silent p.E29E 0.47 TCGA-NC-A5HG-01 X 138619246 138619246 G T F9 Missense_Mutation p.V56F 0.81 tolerated(0.14) possibly_damaging(0.758) TCGA-NC-A5HG-01 X 150349783 150349783 C A GPR50 Silent p.A576A 0.77 TCGA-NC-A5HG-01 X 150349784 150349784 A G GPR50 Missense_Mutation p.S577G 0.77 deleterious_low_confidence(0.01) benign(0.097) TCGA-NC-A5HG-01 X 27766433 27766433 G T DCAF8L2 Missense_Mutation p.G474V 0.73 deleterious(0) possibly_damaging(0.847) TCGA-NC-A5HG-01 X 30269623 30269623 C T MAGEB1 Missense_Mutation p.A338V 0.81 tolerated(0.11) unknown(0) TCGA-NC-A5HG-01 X 31645889 31645889 T A DMD Silent p.T2706T 0.77 TCGA-NC-A5HG-01 X 34961973 34961973 C A FAM47B Missense_Mutation p.S342Y 0.80 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HG-01 X 34961974 34961974 C A FAM47B Silent p.S342S 0.79 TCGA-NC-A5HG-01 X 37027900 37027900 C A FAM47C Missense_Mutation p.H473N 0.79 tolerated_low_confidence(0.31) possibly_damaging(0.535) TCGA-NC-A5HG-01 X 37931349 37931349 C G SYTL5 Missense_Mutation p.R127G 0.81 deleterious(0) probably_damaging(1) TCGA-NC-A5HG-01 X 49088206 49088206 C T CACNA1F Missense_Mutation p.R70Q 0.71 deleterious(0.01) probably_damaging(0.999) TCGA-NC-A5HG-01 X 51639588 51639588 A T MAGED1 Silent p.P335P 0.83 TCGA-NC-A5HG-01 X 86067966 86067966 G T DACH2 Missense_Mutation p.D450Y 0.89 deleterious(0) probably_damaging(0.993) TCGA-NC-A5HG-01 X 89177719 89177719 C A TGIF2LX Missense_Mutation p.A212D 0.80 tolerated(0.29) benign(0.088) TCGA-NC-A5HG-01 X 91132344 91132344 G T PCDH11X Missense_Mutation p.V369F 0.81 tolerated(0.7) benign(0.008) TCGA-NC-A5HH-01 10 101595964 101595964 G T ABCC2 Missense_Mutation p.E1177D 0.80 tolerated(0.09) benign(0.099) TCGA-NC-A5HH-01 10 118306893 118306893 C T PNLIP Missense_Mutation p.P45L 0.83 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HH-01 10 123274774 123274774 A G FGFR2 Missense_Mutation p.C383R 0.87 deleterious(0.02) probably_damaging(0.974) TCGA-NC-A5HH-01 10 124380640 124380640 C A DMBT1 Silent p.V1655V 0.77 TCGA-NC-A5HH-01 10 126655199 126655199 A T ZRANB1 Missense_Mutation p.Y284F 0.83 tolerated(0.17) benign(0.053) TCGA-NC-A5HH-01 10 18266836 18266836 G T SLC39A12 Missense_Mutation p.D253Y 0.70 deleterious(0.01) possibly_damaging(0.873) TCGA-NC-A5HH-01 10 43087911 43087911 T G ZNF33B 3'UTR 0.33 TCGA-NC-A5HH-01 10 51767792 51767792 G T AGAP6 Missense_Mutation p.D181Y 0.35 deleterious_low_confidence(0) possibly_damaging(0.675) TCGA-NC-A5HH-01 10 70253209 70253209 T C SLC25A16 Silent p.A180A 0.68 TCGA-NC-A5HH-01 10 73552998 73552998 G T CDH23 5'Flank 0.64 TCGA-NC-A5HH-01 10 91511146 91511146 A T KIF20B Silent p.T1340T 0.71 TCGA-NC-A5HH-01 10 95079661 95079661 G T MYOF Missense_Mutation p.P1856T 0.38 deleterious(0) probably_damaging(0.973) TCGA-NC-A5HH-01 10 95147663 95147663 C A MYOF Missense_Mutation p.G530V 0.71 deleterious(0) probably_damaging(1) TCGA-NC-A5HH-01 11 100933485 100933485 T C PGR Splice_Site p.X636_splice 0.83 TCGA-NC-A5HH-01 11 11470358 11470358 C T GALNT18 Missense_Mutation p.G121S 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-NC-A5HH-01 11 116706964 116706964 G T APOA1 Missense_Mutation p.Q122K 0.70 tolerated(0.13) benign(0.025) TCGA-NC-A5HH-01 11 119183120 119183120 C A MCAM Missense_Mutation p.A294S 0.71 tolerated(0.33) benign(0.014) TCGA-NC-A5HH-01 11 123909264 123909264 G C OR10G7 Missense_Mutation p.L149V 0.66 tolerated(0.39) possibly_damaging(0.615) TCGA-NC-A5HH-01 11 123909274 123909274 G T OR10G7 Silent p.T145T 0.68 TCGA-NC-A5HH-01 11 128680395 128680395 C T FLI1 Missense_Mutation p.L291F 0.78 deleterious(0) probably_damaging(1) TCGA-NC-A5HH-01 11 134047155 134047155 T A NCAPD3 Missense_Mutation p.I994F 0.24 deleterious(0) probably_damaging(0.985) TCGA-NC-A5HH-01 11 17757860 17757860 G T KCNC1 Missense_Mutation p.C104F 0.20 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HH-01 11 2192973 2192973 C T TH Missense_Mutation p.R15H 0.57 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-NC-A5HH-01 11 22281223 22281223 C T ANO5 Silent p.N522N 0.33 TCGA-NC-A5HH-01 11 26700363 26700363 C A SLC5A12 Splice_Site p.X492_splice 0.37 TCGA-NC-A5HH-01 11 30032725 30032725 C T KCNA4 Missense_Mutation p.A501T 0.47 tolerated(0.07) possibly_damaging(0.665) TCGA-NC-A5HH-01 11 31123762 31123762 C A DCDC1 Nonsense_Mutation p.E649* 0.33 TCGA-NC-A5HH-01 11 32956593 32956593 G T QSER1 Missense_Mutation p.K1134N 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-NC-A5HH-01 11 33564656 33564656 C T KIAA1549L Missense_Mutation p.S219F 0.42 tolerated_low_confidence(0.09) benign(0.014) TCGA-NC-A5HH-01 11 44956425 44956425 C A TP53I11 3'UTR 0.21 TCGA-NC-A5HH-01 11 46665848 46665848 A G ATG13 Missense_Mutation p.T3A 0.46 deleterious(0.02) possibly_damaging(0.68) TCGA-NC-A5HH-01 11 46772905 46772905 T C CKAP5 Silent p.K1771K 0.39 TCGA-NC-A5HH-01 11 46785162 46785162 T - CKAP5 Frame_Shift_Del p.T1186Lfs*11 0.15 TCGA-NC-A5HH-01 11 47843343 47843343 T A NUP160 Missense_Mutation p.T404S 0.36 tolerated(0.36) benign(0.01) TCGA-NC-A5HH-01 11 5345338 5345338 G A OR51B2 Silent p.L64L 0.70 TCGA-NC-A5HH-01 11 55406523 55406523 A T OR4P4 Missense_Mutation p.R230S 0.91 tolerated(0.56) benign(0.001) TCGA-NC-A5HH-01 11 55563392 55563392 G T OR5D14 Missense_Mutation p.A121S 0.47 deleterious(0.01) possibly_damaging(0.608) TCGA-NC-A5HH-01 11 55944194 55944194 T G OR5J2 Missense_Mutation p.I34S 0.44 deleterious(0.01) benign(0.213) TCGA-NC-A5HH-01 11 56086721 56086721 A C OR8K3 Nonstop_Mutation p.*313Yext*? 0.33 TCGA-NC-A5HH-01 11 57946991 57946991 C G OR9Q1 Silent p.L25L 0.18 TCGA-NC-A5HH-01 11 5799209 5799209 T C OR52N5 Missense_Mutation p.D219G 0.64 deleterious(0) probably_damaging(0.984) TCGA-NC-A5HH-01 11 58190267 58190267 G T OR5B2 Missense_Mutation p.F156L 0.39 deleterious_low_confidence(0.04) benign(0.004) TCGA-NC-A5HH-01 11 5863001 5863001 C G OR52E6 Missense_Mutation p.G43R 0.80 deleterious(0.01) benign(0.093) TCGA-NC-A5HH-01 11 5906281 5906281 C A OR52E4 Nonsense_Mutation p.Y253* 0.65 TCGA-NC-A5HH-01 11 61050317 61050317 T C VWCE Missense_Mutation p.Y201C 0.42 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HH-01 11 62299546 62299546 G A AHNAK Silent p.S781S 0.15 TCGA-NC-A5HH-01 11 63357674 63357674 C T PLA2G16 Silent p.R95R 0.38 TCGA-NC-A5HH-01 11 65350109 65350109 A T EHBP1L1 Missense_Mutation p.T656S 0.34 deleterious(0) benign(0.231) TCGA-NC-A5HH-01 11 67201523 67201523 G A RPS6KB2 Missense_Mutation p.V322M 0.29 deleterious(0.01) probably_damaging(0.985) TCGA-NC-A5HH-01 11 88911926 88911926 T C TYR Missense_Mutation p.F269L 0.77 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HH-01 11 92085609 92085609 G T FAT3 Missense_Mutation p.G111C 0.69 probably_damaging(1) TCGA-NC-A5HH-01 12 100813629 100813629 G T SLC17A8 Missense_Mutation p.A488S 0.40 tolerated(0.99) benign(0.034) TCGA-NC-A5HH-01 12 10224014 10224014 C G CLEC1A Missense_Mutation p.R254P 0.26 tolerated(0.21) benign(0.111) TCGA-NC-A5HH-01 12 118016945 118016945 C T KSR2 Missense_Mutation p.G435D 0.35 deleterious(0.02) probably_damaging(1) TCGA-NC-A5HH-01 12 122848595 122848595 C A CLIP1 Silent p.G239G 0.27 TCGA-NC-A5HH-01 12 13906338 13906338 A T GRIN2B Missense_Mutation p.L308Q 0.23 tolerated(0.09) possibly_damaging(0.567) TCGA-NC-A5HH-01 12 21590643 21590643 A G PYROXD1 5'UTR 0.12 TCGA-NC-A5HH-01 12 29757149 29757149 C A TMTC1 Silent p.V404V 0.45 TCGA-NC-A5HH-01 12 32793418 32793418 C T FGD4 Missense_Mutation p.P751L 0.51 tolerated(0.46) benign(0) TCGA-NC-A5HH-01 12 40707876 40707876 G T LRRK2 Missense_Mutation p.V1547L 0.20 deleterious(0) benign(0.338) TCGA-NC-A5HH-01 12 49425794 49425794 G A KMT2D Nonsense_Mutation p.Q4232* 0.21 TCGA-NC-A5HH-01 12 49433967 49433971 CCCAC ACCAAA KMT2D Frame_Shift_Ins p.V2528Ffs*127 0.39 TCGA-NC-A5HH-01 12 53800463 53800463 T A SP1 Missense_Mutation p.D590E 0.50 tolerated(0.21) possibly_damaging(0.739) TCGA-NC-A5HH-01 12 55421335 55421335 G T NEUROD4 3'UTR 0.48 TCGA-NC-A5HH-01 12 56086679 56086679 G A ITGA7 Silent p.S935S 0.28 TCGA-NC-A5HH-01 12 56094891 56094891 C T ITGA7 Silent p.L154L 0.54 TCGA-NC-A5HH-01 12 56822088 56822088 C A TIMELESS Nonsense_Mutation p.E504* 0.28 TCGA-NC-A5HH-01 12 56847416 56847416 G T MIP Missense_Mutation p.L162M 0.33 deleterious(0) probably_damaging(0.946) TCGA-NC-A5HH-01 12 57579467 57579467 G A LRP1 Missense_Mutation p.R2206H 0.29 probably_damaging(0.998) TCGA-NC-A5HH-01 12 57674233 57674233 G A R3HDM2 Nonsense_Mutation p.Q404* 0.26 TCGA-NC-A5HH-01 12 6675724 6675724 G C NOP2 Missense_Mutation p.A70G 0.56 tolerated(0.12) benign(0.199) TCGA-NC-A5HH-01 12 68051595 68051595 T A DYRK2 Missense_Mutation p.L303Q 0.33 deleterious(0) probably_damaging(1) TCGA-NC-A5HH-01 12 6838412 6838412 G T COPS7A Splice_Site p.X110_splice 0.53 TCGA-NC-A5HH-01 12 75601247 75601247 C A KCNC2 Missense_Mutation p.D173Y 0.69 deleterious(0) possibly_damaging(0.869) TCGA-NC-A5HH-01 12 81536986 81536986 T C ACSS3 Missense_Mutation p.L294P 0.20 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HH-01 12 8765422 8765422 T A AICDA 5'UTR 0.19 TCGA-NC-A5HH-01 12 95228567 95228567 G T MIR492 3'Flank 0.30 TCGA-NC-A5HH-01 12 95611023 95611023 C G FGD6 5'UTR 0.46 TCGA-NC-A5HH-01 13 103525659 103525659 T A ERCC5 Missense_Mutation p.L977Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HH-01 13 109617203 109617203 G C MYO16 Missense_Mutation p.L752F 0.24 deleterious(0) probably_damaging(1) TCGA-NC-A5HH-01 13 113174199 113174199 C - TUBGCP3 Splice_Site p.X627_splice 0.19 TCGA-NC-A5HH-01 13 114009729 114009729 C G GRTP1 Silent p.G83G 0.32 TCGA-NC-A5HH-01 13 114322191 114322191 G A GRK1 Missense_Mutation p.E164K 0.61 tolerated(0.08) benign(0.019) TCGA-NC-A5HH-01 13 115090807 115090807 G A CHAMP1 Missense_Mutation p.R497Q 0.74 tolerated(0.18) possibly_damaging(0.892) TCGA-NC-A5HH-01 13 23911171 23911171 A G SACS Silent p.L2282L 0.82 TCGA-NC-A5HH-01 13 76415295 76415295 C T LMO7 Silent p.A978A 0.79 TCGA-NC-A5HH-01 13 84454309 84454309 C A SLITRK1 Missense_Mutation p.G445V 0.35 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HH-01 14 20248562 20248562 A G OR4M1 Silent p.L27L 0.35 TCGA-NC-A5HH-01 14 21109490 21109490 A T OR6S1 Missense_Mutation p.S121T 0.76 deleterious(0) probably_damaging(0.987) TCGA-NC-A5HH-01 14 24642159 24642159 C A REC8 Silent p.G59G 0.67 TCGA-NC-A5HH-01 14 42360467 42360467 C A LRFN5 Missense_Mutation p.T467K 0.65 tolerated(0.05) benign(0.242) TCGA-NC-A5HH-01 14 42360725 42360725 A G LRFN5 Missense_Mutation p.K553R 0.72 tolerated(0.26) benign(0.335) TCGA-NC-A5HH-01 14 58838672 58838672 C T ARID4A Missense_Mutation p.P1247S 0.65 tolerated(0.11) probably_damaging(0.998) TCGA-NC-A5HH-01 14 74154055 74154055 C A DNAL1 Missense_Mutation p.L120I 0.92 deleterious(0) probably_damaging(0.957) TCGA-NC-A5HH-01 14 77737264 77737264 G T NGB Missense_Mutation p.P6H 0.75 tolerated(0.15) benign(0.003) TCGA-NC-A5HH-01 14 92047366 92047366 A G CATSPERB Missense_Mutation p.F1073S 0.79 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HH-01 15 23890442 23890442 T A MAGEL2 Silent p.S213S 0.27 TCGA-NC-A5HH-01 15 24922262 24922262 C T NPAP1 Silent p.Y416Y 0.40 TCGA-NC-A5HH-01 15 24922982 24922982 G T NPAP1 Silent p.P656P 0.22 TCGA-NC-A5HH-01 15 25430717 25430717 G T SNORD115-10 5'Flank 0.36 TCGA-NC-A5HH-01 15 25451252 25451252 C - SNORD115-22 5'Flank 0.32 TCGA-NC-A5HH-01 15 28230285 28230285 C G OCA2 Missense_Mutation p.C430S 0.33 deleterious(0) probably_damaging(1) TCGA-NC-A5HH-01 15 42470480 42470480 G A VPS39 Missense_Mutation p.P299L 0.30 deleterious(0.02) benign(0.209) TCGA-NC-A5HH-01 15 43500944 43500944 C A EPB42 Missense_Mutation p.V318L 0.43 tolerated(0.07) probably_damaging(0.928) TCGA-NC-A5HH-01 15 43622158 43622158 A G LCMT2 Missense_Mutation p.L177P 0.32 deleterious(0) probably_damaging(0.981) TCGA-NC-A5HH-01 15 43892839 43892839 G T STRC Missense_Mutation p.S1629Y 0.41 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HH-01 15 48779300 48779300 A G FBN1 Silent p.H1187H 0.42 TCGA-NC-A5HH-01 15 49030537 49030537 G A CEP152 Missense_Mutation p.S1681L 0.09 tolerated(0.07) benign(0.318) TCGA-NC-A5HH-01 15 50940891 50940891 C T TRPM7 Missense_Mutation p.R105K 0.32 tolerated(0.98) benign(0.002) TCGA-NC-A5HH-01 15 58476250 58476250 C A AQP9 Silent p.I268I 0.43 TCGA-NC-A5HH-01 15 59179735 59179735 C A SLTM Missense_Mutation p.D794Y 0.31 deleterious(0.02) probably_damaging(0.988) TCGA-NC-A5HH-01 15 64428536 64428536 C G SNX1 Missense_Mutation p.S458C 0.43 deleterious(0.01) probably_damaging(0.951) TCGA-NC-A5HH-01 15 75981008 75981008 C A CSPG4 Nonsense_Mutation p.E800* 0.26 TCGA-NC-A5HH-01 15 77406711 77406711 C G PEAK1 Missense_Mutation p.Q1676H 0.21 tolerated(0.3) benign(0.009) TCGA-NC-A5HH-01 15 77425916 77425916 T C PEAK1 Missense_Mutation p.K1170E 0.29 tolerated(0.11) benign(0.437) TCGA-NC-A5HH-01 15 85447354 85447354 G A SLC28A1 Missense_Mutation p.G163D 0.21 deleterious(0.01) possibly_damaging(0.682) TCGA-NC-A5HH-01 15 88472652 88472652 C T NTRK3 Missense_Mutation p.D635N 0.29 deleterious(0) probably_damaging(0.98) TCGA-NC-A5HH-01 15 91026791 91026791 A G IQGAP1 Missense_Mutation p.N1252D 0.20 deleterious(0.01) possibly_damaging(0.753) TCGA-NC-A5HH-01 16 1129851 1129851 A C SSTR5 Missense_Mutation p.K328T 0.65 tolerated(0.27) benign(0.109) TCGA-NC-A5HH-01 16 20386273 20386273 C A PDILT Missense_Mutation p.E184D 0.84 tolerated(0.09) benign(0.306) TCGA-NC-A5HH-01 16 20451173 20451173 G C ACSM5 Missense_Mutation p.E530Q 0.20 tolerated(0.09) benign(0.022) TCGA-NC-A5HH-01 16 22157567 22157567 G T VWA3A Missense_Mutation p.R914I 0.60 deleterious(0) possibly_damaging(0.896) TCGA-NC-A5HH-01 16 22579855 22579855 G T RP11-368J21.3 RNA 0.18 TCGA-NC-A5HH-01 16 24931468 24931468 C - ARHGAP17 Frame_Shift_Del p.E877Rfs*65 0.43 TCGA-NC-A5HH-01 16 50745439 50745452 TCTTCGGGGCCGCC - NOD2 Frame_Shift_Del p.L540Pfs*34 0.50 TCGA-NC-A5HH-01 16 50745493 50745493 C T NOD2 Silent p.G557G 0.71 TCGA-NC-A5HH-01 16 55358937 55358937 G T IRX6 5'UTR 0.89 TCGA-NC-A5HH-01 16 89349861 89349861 T C ANKRD11 Missense_Mutation p.E1030G 0.76 benign(0.219) TCGA-NC-A5HH-01 16 89350449 89350449 G A ANKRD11 Missense_Mutation p.S834F 0.21 probably_damaging(0.996) TCGA-NC-A5HH-01 16 90128672 90128672 C A PRDM7 Intron 0.73 TCGA-NC-A5HH-01 17 10223715 10223715 A G MYH13 Silent p.I1070I 0.31 TCGA-NC-A5HH-01 17 2221203 2221203 G C SRR Missense_Mutation p.D70H 0.24 deleterious(0.05) benign(0.014) TCGA-NC-A5HH-01 17 33495095 33495095 C A UNC45B Silent p.P389P 0.78 TCGA-NC-A5HH-01 17 3526641 3526641 G A SHPK Silent p.N213N 0.15 TCGA-NC-A5HH-01 17 3980013 3980013 T C ZZEF1 Missense_Mutation p.H1051R 0.50 deleterious(0) probably_damaging(0.939) TCGA-NC-A5HH-01 17 41006656 41006656 G T AOC3 Missense_Mutation p.G598C 0.67 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HH-01 17 42334876 42334876 G A SLC4A1 Missense_Mutation p.R490C 0.74 deleterious(0) probably_damaging(1) TCGA-NC-A5HH-01 17 42397730 42397730 A C SLC25A39 Silent p.A292A 0.24 TCGA-NC-A5HH-01 17 4796605 4796605 G T MINK1 Intron 0.44 TCGA-NC-A5HH-01 17 5445242 5445242 C T NLRP1 Silent p.T878T 0.49 TCGA-NC-A5HH-01 17 57743582 57743582 A C CLTC Missense_Mutation p.N588T 0.34 deleterious(0) possibly_damaging(0.841) TCGA-NC-A5HH-01 17 61613477 61613477 C T KCNH6 Intron 0.75 TCGA-NC-A5HH-01 17 68128586 68128586 G A KCNJ16 Missense_Mutation p.G120R 0.61 deleterious(0) possibly_damaging(0.878) TCGA-NC-A5HH-01 17 74005433 74005433 C A EVPL Missense_Mutation p.G1285W 0.78 deleterious(0) probably_damaging(1) TCGA-NC-A5HH-01 17 74623275 74623275 T A ST6GALNAC1 Missense_Mutation p.Q349L 0.35 benign(0.119) TCGA-NC-A5HH-01 17 78090858 78090858 G A GAA Missense_Mutation p.A761T 0.73 tolerated(1) benign(0.001) TCGA-NC-A5HH-01 17 79278737 79278737 G A LINC00482 RNA 0.67 TCGA-NC-A5HH-01 17 79279470 79279470 G C LINC00482 RNA 0.48 TCGA-NC-A5HH-01 18 28972187 28972187 G A DSG4 Missense_Mutation p.E297K 0.37 deleterious(0) probably_damaging(0.919) TCGA-NC-A5HH-01 18 31324041 31324041 A T ASXL3 Missense_Mutation p.H1410L 0.30 benign(0.009) TCGA-NC-A5HH-01 18 40695383 40695383 G T RIT2 Missense_Mutation p.S34R 0.35 deleterious(0) probably_damaging(0.996) TCGA-NC-A5HH-01 18 44266203 44266203 C A ST8SIA5 Missense_Mutation p.G168V 0.41 probably_damaging(0.996) TCGA-NC-A5HH-01 18 44549185 44549185 G A TCEB3CL Missense_Mutation p.P372S 0.04 deleterious(0) probably_damaging(0.96) TCGA-NC-A5HH-01 18 48473606 48473606 G T ME2 3'UTR 0.31 TCGA-NC-A5HH-01 18 50929181 50929181 G T DCC Missense_Mutation p.L951F 0.32 deleterious(0.01) probably_damaging(0.972) TCGA-NC-A5HH-01 18 56052818 56052818 G T NEDD4L Missense_Mutation p.E829D 0.25 tolerated(0.16) probably_damaging(0.986) TCGA-NC-A5HH-01 18 61390683 61390683 A T SERPINB11 3'UTR 0.28 TCGA-NC-A5HH-01 18 67860575 67860575 G A RTTN Missense_Mutation p.T319I 0.53 tolerated(0.07) benign(0.397) TCGA-NC-A5HH-01 18 7046294 7046294 A G LAMA1 Missense_Mutation p.W281R 0.18 deleterious(0.01) benign(0.309) TCGA-NC-A5HH-01 19 10132259 10132259 C A RDH8 Missense_Mutation p.T277N 0.59 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HH-01 19 1235000 1235000 C A C19orf26 Missense_Mutation p.R152L 0.59 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HH-01 19 14028954 14028954 G C CC2D1A Missense_Mutation p.A274P 0.86 deleterious(0) probably_damaging(0.966) TCGA-NC-A5HH-01 19 17322900 17322900 G C MYO9B 3'UTR 0.78 TCGA-NC-A5HH-01 19 17838606 17838606 G T MAP1S Missense_Mutation p.G805C 0.73 deleterious(0.01) probably_damaging(0.984) TCGA-NC-A5HH-01 19 18235094 18235094 G T MAST3 Missense_Mutation p.S259I 0.73 deleterious(0.02) possibly_damaging(0.593) TCGA-NC-A5HH-01 19 19338802 19338802 T A NCAN Missense_Mutation p.D791E 0.64 tolerated(0.2) benign(0.001) TCGA-NC-A5HH-01 19 2243387 2243387 C T SF3A2 5'UTR 0.35 TCGA-NC-A5HH-01 19 282214 282214 T A PPAP2C Missense_Mutation p.T234S 0.74 tolerated(1) benign(0.169) TCGA-NC-A5HH-01 19 35175413 35175413 A G ZNF302 Silent p.S157S 0.30 TCGA-NC-A5HH-01 19 3612061 3612061 C A CACTIN Missense_Mutation p.G713W 0.69 deleterious(0) probably_damaging(1) TCGA-NC-A5HH-01 19 38077458 38077458 A T ZNF571 Intron 0.76 TCGA-NC-A5HH-01 19 39909404 39909404 C G PLEKHG2 Missense_Mutation p.R372G 0.21 tolerated_low_confidence(0.06) benign(0.024) TCGA-NC-A5HH-01 19 41133172 41133172 C T LTBP4 Silent p.G1492G 0.87 TCGA-NC-A5HH-01 19 42312895 42312895 G A CEACAM3 Missense_Mutation p.V157M 0.31 tolerated(0.17) benign(0.277) TCGA-NC-A5HH-01 19 43268310 43268310 G T PSG8 Missense_Mutation p.T63N 0.70 tolerated(0.36) benign(0.319) TCGA-NC-A5HH-01 19 43349291 43349291 G T PSG10P RNA 0.70 TCGA-NC-A5HH-01 19 43358392 43358392 C T PSG10P RNA 0.38 TCGA-NC-A5HH-01 19 43920104 43920104 C A TEX101 Silent p.I29I 0.34 TCGA-NC-A5HH-01 19 48342914 48342914 C G CRX Missense_Mutation p.P197R 0.30 tolerated(0.12) possibly_damaging(0.77) TCGA-NC-A5HH-01 19 49575293 49575293 C A KCNA7 Missense_Mutation p.G184C 0.35 deleterious(0.02) possibly_damaging(0.68) TCGA-NC-A5HH-01 19 49814298 49814298 G A SLC6A16 Missense_Mutation p.R103C 0.75 deleterious(0) probably_damaging(0.911) TCGA-NC-A5HH-01 19 52394983 52394983 C T ZNF649 Missense_Mutation p.G136R 0.74 tolerated(0.13) benign(0.063) TCGA-NC-A5HH-01 19 55105683 55105683 C T LILRA1 5'UTR 0.69 TCGA-NC-A5HH-01 19 55710262 55710262 C A PTPRH Missense_Mutation p.S480I 0.34 probably_damaging(0.974) TCGA-NC-A5HH-01 19 55994459 55994459 G T ZNF628 Missense_Mutation p.M633I 0.69 deleterious(0.05) possibly_damaging(0.584) TCGA-NC-A5HH-01 19 56321433 56321433 C G NLRP11 Silent p.S181S 0.21 TCGA-NC-A5HH-01 19 58549503 58549503 C T ZSCAN1 Missense_Mutation p.S100L 0.84 deleterious(0.01) benign(0.135) TCGA-NC-A5HH-01 19 8028630 8028630 C T ELAVL1 Missense_Mutation p.A240T 0.81 tolerated(0.45) benign(0.002) TCGA-NC-A5HH-01 19 8587363 8587363 G A MYO1F Missense_Mutation p.R1040W 0.35 deleterious(0) possibly_damaging(0.586) TCGA-NC-A5HH-01 19 9066996 9066996 G A MUC16 Missense_Mutation p.S6817F 0.63 unknown(0) TCGA-NC-A5HH-01 1 100214239 100214239 G A FRRS1 Missense_Mutation p.T29I 0.74 tolerated(0.12) benign(0.136) TCGA-NC-A5HH-01 1 100634151 100634151 C T LRRC39 Splice_Site 0.80 TCGA-NC-A5HH-01 1 110709568 110709568 A T SLC6A17 Missense_Mutation p.K6I 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-NC-A5HH-01 1 115399220 115399220 T C SYCP1 Silent p.D45D 0.45 TCGA-NC-A5HH-01 1 117663573 117663573 C G TRIM45 Missense_Mutation p.R84P 0.61 tolerated(0.27) benign(0) TCGA-NC-A5HH-01 1 118693933 118693933 G A SPAG17 Silent p.L49L 0.71 TCGA-NC-A5HH-01 1 119427517 119427517 G T TBX15 Missense_Mutation p.N443K 0.54 tolerated_low_confidence(0.18) benign(0.029) TCGA-NC-A5HH-01 1 12853426 12853426 T G PRAMEF1 Missense_Mutation p.L17R 0.35 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HH-01 1 12941918 12941918 T A PRAMEF4 Missense_Mutation p.E211V 0.62 deleterious(0.02) probably_damaging(0.999) TCGA-NC-A5HH-01 1 150788755 150788755 G A ARNT Missense_Mutation p.R644C 0.36 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-NC-A5HH-01 1 152281922 152281922 G T FLG Missense_Mutation p.R1814S 0.37 benign(0.353) TCGA-NC-A5HH-01 1 152326766 152326766 A G FLG2 Missense_Mutation p.C1166R 0.37 unknown(0) TCGA-NC-A5HH-01 1 152759827 152759827 C G LCE1E Missense_Mutation p.P18A 0.40 deleterious_low_confidence(0) unknown(0) TCGA-NC-A5HH-01 1 153346294 153346294 G A S100A12 3'UTR 0.36 TCGA-NC-A5HH-01 1 155154568 155154568 G T TRIM46 Missense_Mutation p.G610V 0.46 tolerated(0.37) probably_damaging(1) TCGA-NC-A5HH-01 1 156821462 156821462 G A INSRR Missense_Mutation p.L354F 0.46 deleterious(0.02) probably_damaging(1) TCGA-NC-A5HH-01 1 159557957 159557957 C A APCS Missense_Mutation p.P44Q 0.23 tolerated(1) benign(0) TCGA-NC-A5HH-01 1 160011552 160011552 A G KCNJ10 Silent p.H257H 0.25 TCGA-NC-A5HH-01 1 160105701 160105701 C G ATP1A2 Missense_Mutation p.P786R 0.58 deleterious(0) probably_damaging(0.979) TCGA-NC-A5HH-01 1 160121724 160121724 C T ATP1A4 5'UTR 0.27 TCGA-NC-A5HH-01 1 160465903 160465903 C A SLAMF6 Missense_Mutation p.Q110H 0.55 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HH-01 1 160793424 160793509 CAGTGGAAGATATGAGGTATTTGACCAGGTCACTCAGGAGGGCGCTGGACATGACCCAGCCCCTGAGGGCCAAGCAGACTATGATC - LY9 Frame_Shift_Del p.S557Rfs*9 0.21 TCGA-NC-A5HH-01 1 160850429 160850429 C T ITLN1 Missense_Mutation p.D212N 0.45 deleterious(0) probably_damaging(1) TCGA-NC-A5HH-01 1 167511308 167511308 T C CREG1 3'UTR 0.38 TCGA-NC-A5HH-01 1 17331513 17331513 C A ATP13A2 Missense_Mutation p.G115C 0.87 deleterious(0.01) benign(0.236) TCGA-NC-A5HH-01 1 176525786 176525786 G C PAPPA2 Missense_Mutation p.D110H 0.72 tolerated_low_confidence(0.53) benign(0.011) TCGA-NC-A5HH-01 1 181764040 181764040 C A CACNA1E Missense_Mutation p.T2023N 0.46 deleterious(0) possibly_damaging(0.775) TCGA-NC-A5HH-01 1 207697170 207697170 A G CR1 Missense_Mutation p.I234M 0.28 tolerated(0.22) possibly_damaging(0.572) TCGA-NC-A5HH-01 1 21044014 21044014 G A KIF17 Silent p.H62H 0.81 TCGA-NC-A5HH-01 1 211192600 211192600 T A KCNH1 Splice_Site p.X187_splice 0.42 TCGA-NC-A5HH-01 1 214510085 214510085 T C SMYD2 Silent p.H420H 0.09 TCGA-NC-A5HH-01 1 215931954 215931954 A G USH2A Missense_Mutation p.V3791A 0.52 benign(0.042) TCGA-NC-A5HH-01 1 220088823 220088823 C A SLC30A10 Missense_Mutation p.D476Y 0.33 deleterious_low_confidence(0) possibly_damaging(0.867) TCGA-NC-A5HH-01 1 231339670 231339670 C T TRIM67 Missense_Mutation p.T531M 0.35 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HH-01 1 242024804 242024804 G T EXO1 Missense_Mutation p.M347I 0.57 tolerated(0.26) benign(0.007) TCGA-NC-A5HH-01 1 248059036 248059036 C G OR2W3 Missense_Mutation p.R50G 0.62 tolerated(0.32) benign(0.317) TCGA-NC-A5HH-01 1 27100172 27100172 G T ARID1A Missense_Mutation p.R1323L 0.71 unknown(0) TCGA-NC-A5HH-01 1 3342650 3342650 G T PRDM16 Missense_Mutation p.G1049W 0.44 deleterious(0) probably_damaging(0.987) TCGA-NC-A5HH-01 1 39466667 39466667 C T AKIRIN1 Nonsense_Mutation p.Q129* 0.71 TCGA-NC-A5HH-01 1 44071961 44071961 G T PTPRF Silent p.R1178R 0.79 TCGA-NC-A5HH-01 1 44257814 44257814 G T ST3GAL3 Missense_Mutation p.G69C 0.74 deleterious_low_confidence(0) probably_damaging(0.951) TCGA-NC-A5HH-01 1 45292225 45292225 G A PTCH2 Silent p.L971L 0.60 TCGA-NC-A5HH-01 1 57406551 57406551 G T C8B Missense_Mutation p.Q457K 0.31 tolerated(0.27) benign(0.012) TCGA-NC-A5HH-01 1 60324148 60324148 C T HOOK1 Nonsense_Mutation p.R431* 0.77 TCGA-NC-A5HH-01 1 68151109 68151109 C T GADD45A 5'UTR 0.88 TCGA-NC-A5HH-01 1 8000124 8000124 C T TNFRSF9 5'UTR 0.88 TCGA-NC-A5HH-01 1 9099991 9099991 C G SLC2A5 Silent p.R251R 0.47 TCGA-NC-A5HH-01 20 1532538 1532538 A C SIRPD Missense_Mutation p.L74V 0.61 deleterious(0.04) probably_damaging(0.992) TCGA-NC-A5HH-01 20 20140085 20140085 G T C20orf26 Silent p.P341P 0.51 TCGA-NC-A5HH-01 20 21492547 21492547 C T NKX2-2 3'UTR 0.23 TCGA-NC-A5HH-01 20 21687284 21687284 C A PAX1 Silent p.I165I 0.44 TCGA-NC-A5HH-01 20 2375922 2375922 A T TGM6 Silent p.A88A 0.65 TCGA-NC-A5HH-01 20 2474164 2474164 C A ZNF343 Splice_Site p.X59_splice 0.44 TCGA-NC-A5HH-01 20 2592922 2592922 C A TMC2 Missense_Mutation p.P560H 0.57 deleterious(0) possibly_damaging(0.88) TCGA-NC-A5HH-01 20 34260747 34260747 T C NFS1 Missense_Mutation p.T414A 0.45 deleterious(0) possibly_damaging(0.903) TCGA-NC-A5HH-01 20 36640637 36640637 C A TTI1 Nonsense_Mutation p.E528* 0.59 TCGA-NC-A5HH-01 20 39746907 39746907 G C TOP1 Missense_Mutation p.E641Q 0.24 deleterious(0.04) possibly_damaging(0.708) TCGA-NC-A5HH-01 20 41076937 41076937 C A PTPRT Missense_Mutation p.G495W 0.22 tolerated(0.13) possibly_damaging(0.768) TCGA-NC-A5HH-01 20 43056975 43056975 G A HNF4A Missense_Mutation p.G377E 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-NC-A5HH-01 20 43851748 43851748 G T SEMG2 Missense_Mutation p.S492I 0.27 deleterious(0.01) unknown(0) TCGA-NC-A5HH-01 20 44004090 44004090 C T TP53TG5 Silent p.G119G 0.56 TCGA-NC-A5HH-01 20 44751780 44751781 - T CD40 Frame_Shift_Ins p.T141Yfs*28 0.34 TCGA-NC-A5HH-01 20 4679913 4679913 G C PRNP Missense_Mutation p.W16S 0.27 deleterious(0) possibly_damaging(0.677) TCGA-NC-A5HH-01 20 50768831 50768831 C T ZFP64 Missense_Mutation p.G634R 0.24 deleterious(0.04) benign(0.003) TCGA-NC-A5HH-01 20 54579007 54579007 G T CBLN4 Nonsense_Mutation p.S74* 0.43 TCGA-NC-A5HH-01 20 61943028 61943028 G T COL20A1 Missense_Mutation p.D531Y 0.33 deleterious(0.03) probably_damaging(0.98) TCGA-NC-A5HH-01 20 62559712 62559712 G A DNAJC5 Missense_Mutation p.R5K 0.22 tolerated(0.32) benign(0.188) TCGA-NC-A5HH-01 20 62896714 62896714 G C PCMTD2 Missense_Mutation p.E172Q 0.14 tolerated(0.09) benign(0.035) TCGA-NC-A5HH-01 21 30411377 30411377 G T USP16 Missense_Mutation p.G255C 0.45 deleterious(0.02) probably_damaging(1) TCGA-NC-A5HH-01 21 43697010 43697010 G T ABCG1 Silent p.S181S 0.46 TCGA-NC-A5HH-01 21 43846900 43846900 A G UBASH3A Missense_Mutation p.R381G 0.53 tolerated(0.36) benign(0.003) TCGA-NC-A5HH-01 22 22707548 22707548 G A IGLV5-48 Missense_Mutation p.G46S 0.45 deleterious(0.02) possibly_damaging(0.493) TCGA-NC-A5HH-01 22 29966403 29966403 T G NIPSNAP1 Missense_Mutation p.K73Q 0.57 deleterious(0.05) possibly_damaging(0.616) TCGA-NC-A5HH-01 22 30127337 30127337 T A ZMAT5 Missense_Mutation p.E130D 0.53 tolerated(0.52) benign(0) TCGA-NC-A5HH-01 22 30660106 30660106 C A OSM Silent p.P175P 0.43 TCGA-NC-A5HH-01 22 32241116 32241116 A G DEPDC5 Missense_Mutation p.R963G 0.82 tolerated(0.43) benign(0) TCGA-NC-A5HH-01 22 38282852 38282852 G C EIF3L Missense_Mutation p.E552D 0.47 tolerated(0.66) benign(0.028) TCGA-NC-A5HH-01 22 43289518 43289518 C A PACSIN2 Silent p.A54A 0.44 TCGA-NC-A5HH-01 22 43599987 43599987 G T SCUBE1 3'UTR 0.39 TCGA-NC-A5HH-01 2 10102597 10102597 C T GRHL1 Missense_Mutation p.S228L 0.77 tolerated(0.11) benign(0.169) TCGA-NC-A5HH-01 2 131521593 131521593 G C AMER3 Missense_Mutation p.V650L 0.31 deleterious(0.01) benign(0.013) TCGA-NC-A5HH-01 2 141242942 141242942 G T LRP1B Missense_Mutation p.P3132H 0.63 possibly_damaging(0.893) TCGA-NC-A5HH-01 2 141680557 141680557 G C LRP1B Missense_Mutation p.T1099S 0.76 probably_damaging(0.926) TCGA-NC-A5HH-01 2 1457548 1457548 C A TPO Silent p.R189R 0.80 TCGA-NC-A5HH-01 2 152394443 152394443 G A NEB Silent p.S7015S 0.40 TCGA-NC-A5HH-01 2 166854621 166854621 A G SCN1A Missense_Mutation p.I1468T 0.84 deleterious(0) probably_damaging(0.973) TCGA-NC-A5HH-01 2 179437831 179437831 G T TTN Missense_Mutation p.A24343D 0.15 TCGA-NC-A5HH-01 2 179516238 179516238 A T TTN Silent p.V13163V 0.72 TCGA-NC-A5HH-01 2 179582068 179582068 C A TTN Missense_Mutation p.V8465L 0.67 TCGA-NC-A5HH-01 2 179584003 179584003 G A TTN Silent p.N8038N 0.73 TCGA-NC-A5HH-01 2 179621475 179621475 G A TTN Silent p.A3576A 0.69 TCGA-NC-A5HH-01 2 187692917 187692917 C T ZSWIM2 Missense_Mutation p.D566N 0.62 tolerated(0.46) benign(0.007) TCGA-NC-A5HH-01 2 192275859 192275859 G T MYO1B Missense_Mutation p.S945I 0.80 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HH-01 2 201476187 201476187 G T AOX1 Missense_Mutation p.V412F 0.50 tolerated(0.1) benign(0.231) TCGA-NC-A5HH-01 2 20870740 20870740 C A GDF7 Missense_Mutation p.P303Q 0.70 tolerated(0.11) benign(0.004) TCGA-NC-A5HH-01 2 223386653 223386653 G A SGPP2 Missense_Mutation p.M182I 0.33 tolerated(0.39) benign(0.016) TCGA-NC-A5HH-01 2 230020550 230020550 G C PID1 Missense_Mutation p.T85S 0.57 tolerated_low_confidence(0.11) benign(0.013) TCGA-NC-A5HH-01 2 239176749 239176749 C G PER2 Missense_Mutation p.E305D 0.46 deleterious(0.02) benign(0.123) TCGA-NC-A5HH-01 2 26609332 26609332 C G EPT1 Nonsense_Mutation p.Y341* 0.26 TCGA-NC-A5HH-01 2 32693171 32693171 A G BIRC6 Missense_Mutation p.I1924M 0.17 probably_damaging(0.991) TCGA-NC-A5HH-01 2 42867314 42867314 G T MTA3 Nonsense_Mutation p.G107* 0.18 TCGA-NC-A5HH-01 2 55899135 55899135 C A PNPT1 Missense_Mutation p.D305Y 0.33 deleterious(0) probably_damaging(0.987) TCGA-NC-A5HH-01 2 68361811 68361811 G C WDR92 Intron 0.24 TCGA-NC-A5HH-01 2 68882649 68882649 G C PROKR1 Missense_Mutation p.D375H 0.18 deleterious_low_confidence(0) possibly_damaging(0.897) TCGA-NC-A5HH-01 2 71036915 71036916 CC - CLEC4F Frame_Shift_Del p.W538Sfs*51 0.18 TCGA-NC-A5HH-01 3 121206770 121206770 T A POLQ Nonsense_Mutation p.R1670* 0.33 TCGA-NC-A5HH-01 3 121208396 121208396 G C POLQ Missense_Mutation p.L1128V 0.28 tolerated_low_confidence(0.45) benign(0.001) TCGA-NC-A5HH-01 3 121411197 121411197 T C GOLGB1 Silent p.E2338E 0.22 TCGA-NC-A5HH-01 3 124632462 124632462 C T MUC13 Missense_Mutation p.C343Y 0.57 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HH-01 3 125865722 125865722 G A ALDH1L1 Silent p.S354S 0.17 TCGA-NC-A5HH-01 3 128181688 128181688 A T DNAJB8 Missense_Mutation p.F134Y 0.32 tolerated(0.11) benign(0.259) TCGA-NC-A5HH-01 3 128181883 128181883 C A DNAJB8 Missense_Mutation p.G69V 0.25 tolerated(0.13) possibly_damaging(0.868) TCGA-NC-A5HH-01 3 132358500 132358500 C T ACAD11 Missense_Mutation p.V180I 0.17 tolerated(0.22) benign(0.215) TCGA-NC-A5HH-01 3 134825436 134825436 G T EPHB1 Missense_Mutation p.A318S 0.35 tolerated(0.2) benign(0.025) TCGA-NC-A5HH-01 3 140785597 140785597 G T SPSB4 Missense_Mutation p.W217C 0.25 deleterious(0) probably_damaging(0.988) TCGA-NC-A5HH-01 3 14798908 14798908 C T C3orf20 Silent p.T657T 0.78 TCGA-NC-A5HH-01 3 148458942 148458942 G A AGTR1 Silent p.V40V 0.16 TCGA-NC-A5HH-01 3 148458943 148458943 G A AGTR1 Missense_Mutation p.V41M 0.16 deleterious(0.01) benign(0.021) TCGA-NC-A5HH-01 3 149040208 149040208 A G TM4SF18 Silent p.S142S 0.61 TCGA-NC-A5HH-01 3 15115918 15115918 C A ZFYVE20 Missense_Mutation p.G576C 0.72 deleterious_low_confidence(0.01) possibly_damaging(0.606) TCGA-NC-A5HH-01 3 160964179 160964179 A T NMD3 Missense_Mutation p.Q358L 0.56 tolerated(0.24) benign(0.021) TCGA-NC-A5HH-01 3 180378441 180378441 C A CCDC39 Missense_Mutation p.A145S 0.36 tolerated(0.26) possibly_damaging(0.828) TCGA-NC-A5HH-01 3 186459344 186459344 C A KNG1 Missense_Mutation p.P387T 0.51 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HH-01 3 189675766 189675766 C T LEPREL1 Missense_Mutation p.A688T 0.11 tolerated(0.06) possibly_damaging(0.549) TCGA-NC-A5HH-01 3 190326959 190326959 A C IL1RAP Missense_Mutation p.T176P 0.06 deleterious(0.04) possibly_damaging(0.809) TCGA-NC-A5HH-01 3 193052746 193052746 C - ATP13A5 Frame_Shift_Del p.P363Lfs*18 0.16 TCGA-NC-A5HH-01 3 195937569 195937569 A C ZDHHC19 Silent p.P62P 0.42 TCGA-NC-A5HH-01 3 35730818 35730818 G T ARPP21 Silent p.T142T 0.22 TCGA-NC-A5HH-01 3 50329911 50329911 A G IFRD2 5'Flank 0.87 TCGA-NC-A5HH-01 3 74350814 74350814 C A CNTN3 Missense_Mutation p.W643C 0.77 deleterious(0) probably_damaging(1) TCGA-NC-A5HH-01 4 114257118 114257118 C A ANK2 Missense_Mutation p.P1166T 0.74 probably_damaging(1) TCGA-NC-A5HH-01 4 120463630 120463630 T G PDE5A Missense_Mutation p.Q519P 0.71 deleterious(0) possibly_damaging(0.756) TCGA-NC-A5HH-01 4 129100592 129100592 C T LARP1B Missense_Mutation p.T643I 0.29 deleterious(0) benign(0.005) TCGA-NC-A5HH-01 4 146601496 146601496 A C C4orf51 Silent p.T47T 0.37 TCGA-NC-A5HH-01 4 146744610 146744610 T G ZNF827 Missense_Mutation p.S783R 0.65 tolerated(0.52) benign(0.094) TCGA-NC-A5HH-01 4 148441098 148441098 C T EDNRA Silent p.T172T 0.44 TCGA-NC-A5HH-01 4 187208969 187208969 G A F11 Missense_Mutation p.A570T 0.67 tolerated(0.07) benign(0.28) TCGA-NC-A5HH-01 4 2160927 2160927 C T POLN Silent p.L522L 0.36 TCGA-NC-A5HH-01 4 38776743 38776743 A G TLR10 Missense_Mutation p.S157P 0.82 deleterious(0.03) probably_damaging(0.987) TCGA-NC-A5HH-01 4 42403499 42403499 C T SHISA3 3'UTR 0.71 TCGA-NC-A5HH-01 4 47163440 47163440 C A GABRB1 Silent p.R139R 0.51 TCGA-NC-A5HH-01 4 47680018 47680018 T C CORIN Missense_Mutation p.T396A 0.53 tolerated(1) benign(0.004) TCGA-NC-A5HH-01 4 48502222 48502222 C T FRYL Missense_Mutation p.E2870K 0.27 tolerated(0.67) benign(0.119) TCGA-NC-A5HH-01 4 53740134 53740134 G A SCFD2 3'UTR 0.27 TCGA-NC-A5HH-01 4 55133854 55133854 T G PDGFRA Missense_Mutation p.L356R 0.47 deleterious(0) probably_damaging(0.982) TCGA-NC-A5HH-01 4 70822060 70822060 A G CSN2 3'UTR 0.45 TCGA-NC-A5HH-01 4 72897793 72897793 C T NPFFR2 Missense_Mutation p.R59C 0.57 deleterious_low_confidence(0.01) benign(0.001) TCGA-NC-A5HH-01 4 76797650 76797650 G A PPEF2 Silent p.S370S 0.58 TCGA-NC-A5HH-01 4 85661417 85661417 C A WDFY3 Missense_Mutation p.L2129F 0.61 deleterious(0) probably_damaging(0.954) TCGA-NC-A5HH-01 4 91229784 91229784 G T CCSER1 Missense_Mutation p.V117F 0.84 tolerated(0.57) possibly_damaging(0.73) TCGA-NC-A5HH-01 5 101575057 101575057 T C SLCO4C1 Missense_Mutation p.I638V 0.64 deleterious(0.01) probably_damaging(0.953) TCGA-NC-A5HH-01 5 1036498 1036498 T C NKD2 Silent p.P262P 0.20 TCGA-NC-A5HH-01 5 109103408 109103408 G T MAN2A1 Missense_Mutation p.W336C 0.70 deleterious(0) probably_damaging(0.988) TCGA-NC-A5HH-01 5 1213576 1213576 A T SLC6A19 Splice_Site p.X222_splice 0.08 TCGA-NC-A5HH-01 5 121488079 121488079 A T ZNF474 Missense_Mutation p.R132W 0.76 deleterious(0) probably_damaging(1) TCGA-NC-A5HH-01 5 137277636 137277636 C A FAM13B Missense_Mutation p.G874V 0.67 deleterious(0) probably_damaging(1) TCGA-NC-A5HH-01 5 137277637 137277637 C A FAM13B Nonsense_Mutation p.G874* 0.67 TCGA-NC-A5HH-01 5 13830167 13830167 T C DNAH5 Missense_Mutation p.M2073V 0.14 benign(0.072) TCGA-NC-A5HH-01 5 13914653 13914653 T A DNAH5 Silent p.I432I 0.72 TCGA-NC-A5HH-01 5 140237079 140237079 C T PCDHA10 Silent p.D482D 0.40 TCGA-NC-A5HH-01 5 140616351 140616351 C A PCDHB18 RNA 0.73 TCGA-NC-A5HH-01 5 140736209 140736209 G C PCDHGA4 Missense_Mutation p.S481T 0.73 deleterious_low_confidence(0.03) possibly_damaging(0.637) TCGA-NC-A5HH-01 5 140749975 140749975 C A PCDHGB3 Missense_Mutation p.S5Y 0.85 tolerated_low_confidence(1) benign(0.165) TCGA-NC-A5HH-01 5 140751567 140751567 G A PCDHGB3 Missense_Mutation p.D536N 0.76 deleterious(0.01) probably_damaging(0.969) TCGA-NC-A5HH-01 5 1483559 1483559 C A LPCAT1 Missense_Mutation p.R237L 0.10 deleterious(0) probably_damaging(0.992) TCGA-NC-A5HH-01 5 149357871 149357871 T G SLC26A2 Missense_Mutation p.I219S 0.83 deleterious(0) probably_damaging(0.984) TCGA-NC-A5HH-01 5 151784194 151784194 G C NMUR2 Missense_Mutation p.R161G 0.70 tolerated(0.31) benign(0.011) TCGA-NC-A5HH-01 5 180582857 180582857 G T OR2V2 Silent p.G305G 0.42 TCGA-NC-A5HH-01 5 24491897 24491897 T C CDH10 Missense_Mutation p.N555S 0.31 tolerated(1) benign(0.001) TCGA-NC-A5HH-01 5 31323408 31323408 A G CDH6 Missense_Mutation p.D789G 0.30 tolerated(0.08) benign(0.007) TCGA-NC-A5HH-01 5 32058116 32058116 G A PDZD2 Missense_Mutation p.A703T 0.09 tolerated(0.14) benign(0.009) TCGA-NC-A5HH-01 5 32058118 32058118 G C PDZD2 Silent p.A703A 0.08 TCGA-NC-A5HH-01 5 34998785 34998785 A T AGXT2 3'UTR 0.58 TCGA-NC-A5HH-01 5 35644538 35644538 G T SPEF2 Missense_Mutation p.V166L 0.36 deleterious(0.05) benign(0) TCGA-NC-A5HH-01 5 35910512 35910512 C T CAPSL Missense_Mutation p.G91R 0.19 tolerated(0.07) benign(0.036) TCGA-NC-A5HH-01 5 37049275 37049275 A T NIPBL Missense_Mutation p.S2276C 0.31 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HH-01 5 37723034 37723034 C T WDR70 Missense_Mutation p.T532I 0.10 deleterious(0) probably_damaging(0.921) TCGA-NC-A5HH-01 5 38496585 38496585 T G LIFR Missense_Mutation p.E595A 0.16 deleterious(0.01) possibly_damaging(0.723) TCGA-NC-A5HH-01 5 42700035 42700035 T G GHR Missense_Mutation p.I183M 0.10 tolerated(0.06) possibly_damaging(0.552) TCGA-NC-A5HH-01 5 50092978 50092978 G A PARP8 Missense_Mutation p.E496K 0.62 tolerated(0.95) benign(0.023) TCGA-NC-A5HH-01 5 63256345 63256345 G C HTR1A Missense_Mutation p.A401G 0.70 deleterious(0.02) probably_damaging(0.997) TCGA-NC-A5HH-01 5 66461649 66461649 T A MAST4 Silent p.S2214S 0.79 TCGA-NC-A5HH-01 6 108645235 108645235 G A LACE1 Missense_Mutation p.E116K 0.45 tolerated(0.95) benign(0.001) TCGA-NC-A5HH-01 6 110428320 110428320 T G WASF1 Missense_Mutation p.Q167P 0.30 deleterious(0) unknown(0) TCGA-NC-A5HH-01 6 117662402 117662402 G C ROS1 Missense_Mutation p.P1659A 0.27 deleterious(0.02) probably_damaging(1) TCGA-NC-A5HH-01 6 12122854 12122854 A T HIVEP1 Missense_Mutation p.Q942H 0.26 tolerated(0.63) possibly_damaging(0.77) TCGA-NC-A5HH-01 6 126667412 126667412 G T CENPW Missense_Mutation p.C63F 0.15 tolerated(1) benign(0.006) TCGA-NC-A5HH-01 6 127469923 127469923 T C RSPO3 Silent p.C76C 0.38 TCGA-NC-A5HH-01 6 132966145 132966145 A T TAAR1 Nonsense_Mutation p.L333* 0.90 TCGA-NC-A5HH-01 6 138655368 138655368 G C KIAA1244 Missense_Mutation p.K1795N 0.42 deleterious(0.02) possibly_damaging(0.451) TCGA-NC-A5HH-01 6 139094679 139094679 G A CCDC28A 5'UTR 0.74 TCGA-NC-A5HH-01 6 146720230 146720230 C T GRM1 Silent p.I685I 0.72 TCGA-NC-A5HH-01 6 155139626 155139626 G T SCAF8 Missense_Mutation p.R512L 0.66 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HH-01 6 24448385 24448385 G T GPLD1 Missense_Mutation p.P500T 0.76 deleterious(0) probably_damaging(0.996) TCGA-NC-A5HH-01 6 25861869 25861869 C A SLC17A3 Missense_Mutation p.C203F 0.63 tolerated(0.06) benign(0.035) TCGA-NC-A5HH-01 6 2785633 2785633 C T WRNIP1 3'UTR 0.56 TCGA-NC-A5HH-01 6 29080059 29080059 G T OR2J3 Missense_Mutation p.R131I 0.45 deleterious(0) possibly_damaging(0.908) TCGA-NC-A5HH-01 6 2949251 2949251 G A SERPINB6 Missense_Mutation p.T209I 0.55 tolerated(0.18) benign(0.101) TCGA-NC-A5HH-01 6 39281882 39281882 G T KCNK17 Missense_Mutation p.P72Q 0.56 tolerated(0.33) benign(0.008) TCGA-NC-A5HH-01 6 49660507 49660507 T C CRISP2 Silent p.L237L 0.48 TCGA-NC-A5HH-01 6 66204621 66204621 C A EYS Missense_Mutation p.C228F 0.38 deleterious(0) benign(0.217) TCGA-NC-A5HH-01 6 70049294 70049294 C A BAI3 Silent p.A1119A 0.28 TCGA-NC-A5HH-01 7 142099560 142099560 C A TRBV7-8 Missense_Mutation p.S81I 0.31 deleterious(0.01) benign(0.195) TCGA-NC-A5HH-01 7 143772217 143772217 G A OR2A25 Missense_Mutation p.R302K 0.74 tolerated(0.39) benign(0.005) TCGA-NC-A5HH-01 7 150554896 150554896 G A AOC1 Silent p.K446K 0.75 TCGA-NC-A5HH-01 7 156762443 156762444 - T NOM1 3'UTR 0.37 TCGA-NC-A5HH-01 7 27187030 27187030 G A HOXA6 Silent p.P113P 0.66 TCGA-NC-A5HH-01 7 38502609 38502609 G T AMPH Missense_Mutation p.S285Y 0.37 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HH-01 7 44147504 44147504 C G AEBP1 Missense_Mutation p.P279R 0.92 tolerated_low_confidence(0.23) benign(0) TCGA-NC-A5HH-01 7 44467254 44467254 G A NUDCD3 Silent p.V186V 0.76 TCGA-NC-A5HH-01 7 53104327 53104327 C A POM121L12 3'UTR 0.73 TCGA-NC-A5HH-01 7 62752608 62752608 T A ZNF733P RNA 0.68 TCGA-NC-A5HH-01 7 72892483 72892483 C T BAZ1B Silent p.K436K 0.65 TCGA-NC-A5HH-01 7 7472127 7472127 C T COL28A1 Missense_Mutation p.G659R 0.37 deleterious(0.02) probably_damaging(1) TCGA-NC-A5HH-01 7 96653904 96653904 C A DLX5 Missense_Mutation p.S11I 0.72 deleterious(0.01) benign(0.004) TCGA-NC-A5HH-01 7 97933543 97933543 T A BAIAP2L1 Nonsense_Mutation p.K463* 0.63 TCGA-NC-A5HH-01 8 101076242 101076242 G T RGS22 Missense_Mutation p.P252T 0.53 tolerated(0.2) benign(0.282) TCGA-NC-A5HH-01 8 103220333 103220333 T C RRM2B 3'UTR 0.25 TCGA-NC-A5HH-01 8 120569923 120569923 C T ENPP2 Silent p.E862E 0.26 TCGA-NC-A5HH-01 8 139727975 139727975 C A COL22A1 Nonsense_Mutation p.E823* 0.60 TCGA-NC-A5HH-01 8 145059350 145059350 T A PARP10 Nonsense_Mutation p.K274* 0.48 TCGA-NC-A5HH-01 8 38002801 38002801 T A STAR Missense_Mutation p.H228L 0.53 deleterious(0.03) benign(0.003) TCGA-NC-A5HH-01 8 53025685 53025685 A G ST18 3'UTR 0.23 TCGA-NC-A5HH-01 8 6479005 6479005 G - MCPH1 Frame_Shift_Del p.P750Rfs*29 0.43 TCGA-NC-A5HH-01 8 70981731 70981731 G T PRDM14 Missense_Mutation p.A122E 0.50 tolerated_low_confidence(0.96) benign(0.011) TCGA-NC-A5HH-01 8 80677671 80677671 G T HEY1 Missense_Mutation p.H227N 0.49 tolerated(0.09) possibly_damaging(0.541) TCGA-NC-A5HH-01 8 80679866 80679866 C T HEY1 Silent p.S11S 0.36 TCGA-NC-A5HH-01 8 86037027 86037027 T C LRRCC1 Silent p.S375S 0.14 TCGA-NC-A5HH-01 8 88249332 88249332 G T CNBD1 Missense_Mutation p.D255Y 0.29 deleterious(0.01) benign(0.305) TCGA-NC-A5HH-01 9 1053798 1053798 G C DMRT2 Missense_Mutation p.S201T 0.67 tolerated(0.16) possibly_damaging(0.868) TCGA-NC-A5HH-01 9 107298566 107298566 C A OR13C3 Missense_Mutation p.V177L 0.61 tolerated(0.71) benign(0.05) TCGA-NC-A5HH-01 9 135527852 135527852 G T DDX31 Missense_Mutation p.L311I 0.56 tolerated(0.61) benign(0.173) TCGA-NC-A5HH-01 9 135781117 135781117 G A TSC1 Silent p.A616A 0.76 TCGA-NC-A5HH-01 9 138416738 138416738 G A LCN1 Missense_Mutation p.G156R 0.53 tolerated(0.07) possibly_damaging(0.776) TCGA-NC-A5HH-01 9 139943310 139943310 G A ENTPD2 Silent p.A429A 0.83 TCGA-NC-A5HH-01 9 16552541 16552541 C A BNC2 Missense_Mutation p.G219V 0.65 deleterious(0) possibly_damaging(0.902) TCGA-NC-A5HH-01 9 33387035 33387035 T G AQP7 Missense_Mutation p.Y67S 0.09 deleterious(0.01) probably_damaging(0.974) TCGA-NC-A5HH-01 9 40705841 40705841 C T SPATA31A3 Silent p.N1166N 0.59 TCGA-NC-A5HH-01 9 439353 439353 G T DOCK8 Missense_Mutation p.G1730C 0.82 deleterious(0.02) probably_damaging(1) TCGA-NC-A5HH-01 9 84603833 84603833 G T SPATA31D1 Missense_Mutation p.G34W 0.72 deleterious(0) probably_damaging(0.988) TCGA-NC-A5HH-01 9 85928575 85928575 C A FRMD3 Missense_Mutation p.K228N 0.69 deleterious(0) possibly_damaging(0.722) TCGA-NC-A5HH-01 9 90388512 90388512 G T CTSL3P RNA 0.63 TCGA-NC-A5HH-01 9 94877643 94877643 C G SPTLC1 Missense_Mutation p.A4P 0.28 tolerated_low_confidence(0.15) benign(0) TCGA-NC-A5HH-01 X 110491998 110492160 X:110491998-110492160 - CAPN6 large deletion p.X428_splice 0.27 TCGA-NC-A5HH-01 X 110492286 110494144 X:110492286-110494144 - CAPN6 large deletion p.X387_splice 0.32 TCGA-NC-A5HH-01 X 117566848 117566848 A G WDR44 Silent p.S614S 0.70 TCGA-NC-A5HH-01 X 134715461 134715461 G T DDX26B Missense_Mutation p.R829I 0.45 deleterious(0) probably_damaging(0.962) TCGA-NC-A5HH-01 X 138827926 138827926 C A ATP11C Silent p.G976G 0.78 TCGA-NC-A5HH-01 X 153132165 153132165 G A L1CAM Silent p.A790A 0.36 TCGA-NC-A5HH-01 X 153626875 153626875 C T RPL10 Silent p.P5P 0.82 TCGA-NC-A5HH-01 X 23953367 23953367 T A CXorf58 Missense_Mutation p.W204R 0.89 deleterious(0) probably_damaging(1) TCGA-NC-A5HH-01 X 30237259 30237259 G A MAGEB2 Missense_Mutation p.D188N 0.90 tolerated(1) benign(0.008) TCGA-NC-A5HH-01 X 33146341 33146341 C G DMD Intron 0.29 TCGA-NC-A5HH-01 X 38525531 38525531 A G TSPAN7 Missense_Mutation p.T80A 0.79 tolerated(0.12) benign(0.116) TCGA-NC-A5HH-01 X 41029465 41029465 C A USP9X Missense_Mutation p.Q952K 0.45 deleterious(0.04) possibly_damaging(0.824) TCGA-NC-A5HH-01 X 49958758 49958758 C T AKAP4 Silent p.Q202Q 0.84 TCGA-NC-A5HH-01 X 70321080 70321080 G C FOXO4 Missense_Mutation p.V334L 0.84 tolerated(1) benign(0) TCGA-NC-A5HH-01 X 77378727 77378727 G A PGK1 Silent p.K264K 0.10 TCGA-NC-A5HH-01 X 91873741 91873741 G A PCDH11X Nonsense_Mutation p.W1282* 0.69 TCGA-NC-A5HH-01 Y 9304910 9304910 G C TSPY1 Missense_Mutation p.G101R 0.28 deleterious(0.03) possibly_damaging(0.566) TCGA-NC-A5HI-01 10 114925800 114925800 C T TCF7L2 3'UTR 0.37 TCGA-NC-A5HI-01 10 131640477 131640477 C A EBF3 Silent p.L416L 0.42 TCGA-NC-A5HI-01 10 16893241 16893241 T A CUBN Missense_Mutation p.Y3219F 0.22 deleterious(0.04) possibly_damaging(0.651) TCGA-NC-A5HI-01 10 16943357 16943357 G T CUBN Missense_Mutation p.P2722T 0.23 deleterious(0.01) unknown(0) TCGA-NC-A5HI-01 10 27437893 27437893 G A YME1L1 Missense_Mutation p.S37L 0.11 deleterious_low_confidence(0.02) benign(0.002) TCGA-NC-A5HI-01 10 27539329 27539329 C T RP11-85G18.6 RNA 0.24 TCGA-NC-A5HI-01 10 31139190 31139190 G T ZNF438 Silent p.S48S 0.25 TCGA-NC-A5HI-01 10 33134476 33134476 G A C10ORF68 Missense_Mutation p.D391N 0.20 deleterious(0.03) benign(0.217) TCGA-NC-A5HI-01 10 43623801 43623801 G T RET 3'UTR 0.28 TCGA-NC-A5HI-01 10 50118223 50118223 C T LRRC18 3'UTR 0.39 TCGA-NC-A5HI-01 10 5541074 5541074 G T CALML5 Missense_Mutation p.L110M 0.24 tolerated(0.1) benign(0.318) TCGA-NC-A5HI-01 10 68687291 68687291 G T LRRTM3 Missense_Mutation p.R206I 0.37 deleterious(0) probably_damaging(0.972) TCGA-NC-A5HI-01 10 79795302 79795302 G A RPS24 Missense_Mutation p.V35M 0.41 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-NC-A5HI-01 10 82036300 82036300 G A MAT1A Silent p.I200I 0.35 TCGA-NC-A5HI-01 10 82036315 82036315 G A MAT1A Silent p.V195V 0.33 TCGA-NC-A5HI-01 10 83635661 83635661 G T NRG3 Missense_Mutation p.A189S 0.36 tolerated(0.44) benign(0.202) TCGA-NC-A5HI-01 10 87482861 87482861 G A GRID1 Silent p.I632I 0.24 TCGA-NC-A5HI-01 10 89717708 89717708 C T PTEN Nonsense_Mutation p.Q245* 0.49 TCGA-NC-A5HI-01 10 94366930 94366930 G C KIF11 Missense_Mutation p.G108A 0.53 deleterious(0) probably_damaging(1) TCGA-NC-A5HI-01 10 99123643 99123643 C A RRP12 Missense_Mutation p.A1179S 0.39 tolerated(0.65) benign(0.004) TCGA-NC-A5HI-01 11 105623945 105623945 G T GRIA4 Missense_Mutation p.R162S 0.30 tolerated(0.32) possibly_damaging(0.639) TCGA-NC-A5HI-01 11 106558476 106558476 T C GUCY1A2 Silent p.L697L 0.22 TCGA-NC-A5HI-01 11 121420681 121420681 C A SORL1 Missense_Mutation p.F688L 0.20 tolerated(0.06) probably_damaging(0.995) TCGA-NC-A5HI-01 11 123847527 123847527 G C OR10S1 Missense_Mutation p.T291R 0.27 deleterious(0) probably_damaging(0.98) TCGA-NC-A5HI-01 11 123909115 123909115 G T OR10G7 Silent p.I198I 0.30 TCGA-NC-A5HI-01 11 123988541 123988541 G T VWA5A Missense_Mutation p.D69Y 0.26 deleterious(0.02) probably_damaging(0.997) TCGA-NC-A5HI-01 11 124006865 124006865 G A VWA5A Silent p.Q463Q 0.32 TCGA-NC-A5HI-01 11 124252964 124252964 G A OR8B2 Silent p.I92I 0.23 TCGA-NC-A5HI-01 11 125496710 125496710 G T CHEK1 Missense_Mutation p.G16V 0.17 deleterious(0) probably_damaging(1) TCGA-NC-A5HI-01 11 130013407 130013407 G A APLP2 3'UTR 0.26 TCGA-NC-A5HI-01 11 34502431 34502431 C A ELF5 Missense_Mutation p.D197Y 0.27 deleterious(0) probably_damaging(0.988) TCGA-NC-A5HI-01 11 4567166 4567166 G T OR52M1 Missense_Mutation p.C249F 0.37 deleterious(0.05) probably_damaging(0.954) TCGA-NC-A5HI-01 11 49974141 49974141 C A OR4C13 Missense_Mutation p.P56H 0.23 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-NC-A5HI-01 11 55418457 55418457 T C OR4S2 Silent p.F26F 0.17 TCGA-NC-A5HI-01 11 55905134 55905134 G T OR8J3 Missense_Mutation p.P21T 0.23 deleterious(0.01) possibly_damaging(0.721) TCGA-NC-A5HI-01 11 56113990 56113990 C A OR8K1 Missense_Mutation p.T159K 0.19 deleterious_low_confidence(0.01) benign(0.352) TCGA-NC-A5HI-01 11 56143542 56143542 C T OR8U1 Missense_Mutation p.P148L 0.21 deleterious(0.03) probably_damaging(1) TCGA-NC-A5HI-01 11 56511135 56511135 C A OR9G4 Missense_Mutation p.L51F 0.23 tolerated(0.07) benign(0.093) TCGA-NC-A5HI-01 11 57577659 57577659 A G CTNND1 Silent p.P838P 0.16 TCGA-NC-A5HI-01 11 57971419 57971419 G T OR1S2 Missense_Mutation p.L79I 0.16 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HI-01 11 59189493 59189494 - C OR5A2 Frame_Shift_Ins p.I312Dfs*21 0.18 TCGA-NC-A5HI-01 11 59481067 59481067 G T OR10V1 Missense_Mutation p.N84K 0.26 deleterious(0.01) benign(0.359) TCGA-NC-A5HI-01 11 60971667 60971667 C A PGA3 Missense_Mutation p.P49T 0.28 tolerated(0.4) probably_damaging(0.914) TCGA-NC-A5HI-01 11 63342513 63342513 T A PLA2G16 Missense_Mutation p.R131S 0.27 tolerated(0.1) benign(0.016) TCGA-NC-A5HI-01 11 64607606 64607606 C A CDC42BPG Silent p.L189L 0.33 TCGA-NC-A5HI-01 11 6953496 6953496 T G ZNF215 5'UTR 0.42 TCGA-NC-A5HI-01 11 7021758 7021758 A G ZNF214 Missense_Mutation p.Y386H 0.17 deleterious(0) possibly_damaging(0.509) TCGA-NC-A5HI-01 11 71821106 71821106 G A LRTOMT 3'UTR 0.26 TCGA-NC-A5HI-01 11 71821512 71821512 G A LRTOMT 3'UTR 0.20 TCGA-NC-A5HI-01 11 82535980 82535980 C A PRCP Missense_Mutation p.D508Y 0.19 deleterious(0.04) benign(0.013) TCGA-NC-A5HI-01 11 85435218 85435218 G A SYTL2 Missense_Mutation p.S761F 0.17 tolerated(0.16) benign(0.208) TCGA-NC-A5HI-01 11 86055737 86055737 C G C11orf73 Missense_Mutation p.F171L 0.27 tolerated(0.07) benign(0.052) TCGA-NC-A5HI-01 11 86662203 86662203 C A FZD4 Missense_Mutation p.G532V 0.28 deleterious(0.01) possibly_damaging(0.887) TCGA-NC-A5HI-01 11 89935984 89935984 C T CHORDC1 Nonsense_Mutation p.W283* 0.20 TCGA-NC-A5HI-01 11 89935985 89935985 C A CHORDC1 Missense_Mutation p.W283L 0.20 deleterious(0.02) benign(0.315) TCGA-NC-A5HI-01 11 92533635 92533635 G C FAT3 Missense_Mutation p.V2486L 0.25 possibly_damaging(0.512) TCGA-NC-A5HI-01 11 93754628 93754628 G A HEPHL1 Missense_Mutation p.G32R 0.20 tolerated(0.05) probably_damaging(0.998) TCGA-NC-A5HI-01 11 93886660 93886660 C A PANX1 Missense_Mutation p.T62K 0.25 deleterious(0) possibly_damaging(0.904) TCGA-NC-A5HI-01 12 100774680 100774680 G T SLC17A8 Silent p.V101V 0.24 TCGA-NC-A5HI-01 12 100955771 100955771 C A NR1H4 Missense_Mutation p.S406Y 0.19 deleterious(0.03) probably_damaging(0.995) TCGA-NC-A5HI-01 12 10601925 10601925 C T KLRC1 Missense_Mutation p.G134S 0.25 tolerated(1) benign(0.296) TCGA-NC-A5HI-01 12 106799754 106799754 A G POLR3B Silent p.P322P 0.22 TCGA-NC-A5HI-01 12 109052631 109052631 A G CORO1C Silent p.D171D 0.30 TCGA-NC-A5HI-01 12 10962033 10962033 C A TAS2R9 Silent p.L214L 0.23 TCGA-NC-A5HI-01 12 109660325 109660325 G T ACACB Missense_Mutation p.G1193V 0.19 deleterious(0.03) possibly_damaging(0.673) TCGA-NC-A5HI-01 12 110222123 110222123 C A TRPV4 Missense_Mutation p.R819M 0.29 deleterious(0.02) probably_damaging(0.971) TCGA-NC-A5HI-01 12 11091536 11091536 C G TAS2R14 Missense_Mutation p.V91L 0.24 tolerated(0.12) benign(0.071) TCGA-NC-A5HI-01 12 113543636 113543636 G T RASAL1 Silent p.G572G 0.25 TCGA-NC-A5HI-01 12 1192726 1192726 G T ERC1 Nonsense_Mutation p.E356* 0.23 TCGA-NC-A5HI-01 12 124298306 124298306 G T DNAH10 Silent p.L1091L 0.36 TCGA-NC-A5HI-01 12 129559328 129559328 C T TMEM132D Missense_Mutation p.G798S 0.06 deleterious(0.04) benign(0.426) TCGA-NC-A5HI-01 12 14631403 14631403 A G ATF7IP Missense_Mutation p.T1032A 0.31 tolerated_low_confidence(0.12) unknown(0) TCGA-NC-A5HI-01 12 18650671 18650671 G T PIK3C2G Missense_Mutation p.G961V 0.31 deleterious(0) probably_damaging(1) TCGA-NC-A5HI-01 12 19667636 19667636 C T AEBP2 Nonsense_Mutation p.R467* 0.38 TCGA-NC-A5HI-01 12 26878626 26878626 T G ITPR2 Missense_Mutation p.K79T 0.27 tolerated(0.47) benign(0.146) TCGA-NC-A5HI-01 12 32260240 32260240 C T BICD1 5'UTR 0.27 TCGA-NC-A5HI-01 12 40441977 40441977 C A SLC2A13 Nonsense_Mutation p.E198* 0.22 TCGA-NC-A5HI-01 12 4920452 4920452 G T KCNA6 Missense_Mutation p.W415C 0.24 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HI-01 12 49427912 49427912 C T KMT2D Missense_Mutation p.D3560N 0.23 probably_damaging(0.98) TCGA-NC-A5HI-01 12 54635689 54635689 C T CBX5 Nonsense_Mutation p.W142* 0.39 TCGA-NC-A5HI-01 12 5541407 5541407 G C NTF3 5'UTR 0.30 TCGA-NC-A5HI-01 12 56335336 56335336 G C DGKA Silent p.V406V 0.22 TCGA-NC-A5HI-01 12 62783439 62783439 G T USP15 Nonsense_Mutation p.E538* 0.32 TCGA-NC-A5HI-01 12 66152270 66152270 C A RPSAP52 RNA 0.32 TCGA-NC-A5HI-01 12 6630235 6630235 A T NCAPD2 Missense_Mutation p.E558V 0.24 deleterious(0.01) benign(0.347) TCGA-NC-A5HI-01 12 70953208 70953208 C - PTPRB Frame_Shift_Del p.R1544Dfs*26 0.17 TCGA-NC-A5HI-01 12 70954687 70954687 C T PTPRB Missense_Mutation p.G1399E 0.17 tolerated(0.06) possibly_damaging(0.802) TCGA-NC-A5HI-01 12 71056292 71056292 G A PTPRR Nonsense_Mutation p.R531* 0.28 TCGA-NC-A5HI-01 12 73056914 73056914 G C TRHDE Missense_Mutation p.R1005P 0.17 deleterious(0) benign(0.353) TCGA-NC-A5HI-01 12 7981374 7981374 G A SLC2A14 Missense_Mutation p.A224V 0.17 tolerated(0.99) benign(0.005) TCGA-NC-A5HI-01 12 82752168 82752168 A T CCDC59 5'UTR 0.08 TCGA-NC-A5HI-01 12 82828484 82828484 G T METTL25 Missense_Mutation p.R462L 0.19 deleterious(0) possibly_damaging(0.762) TCGA-NC-A5HI-01 13 106118668 106118668 C G DAOA Missense_Mutation p.L11V 0.07 tolerated_low_confidence(0.09) possibly_damaging(0.567) TCGA-NC-A5HI-01 13 107187311 107187311 A G EFNB2 Translation_Start_Site p.M1? 0.29 deleterious_low_confidence(0) possibly_damaging(0.599) TCGA-NC-A5HI-01 13 113814492 113814492 G T PROZ Splice_Site p.X100_splice 0.10 TCGA-NC-A5HI-01 13 22069319 22069319 C G MICU2 Missense_Mutation p.R394T 0.16 deleterious(0) probably_damaging(1) TCGA-NC-A5HI-01 13 25435475 25435475 C T RNF17 Missense_Mutation p.P1282S 0.07 deleterious(0.04) probably_damaging(0.992) TCGA-NC-A5HI-01 13 32912159 32912159 C T BRCA2 Missense_Mutation p.H1223Y 0.27 tolerated(0.08) benign(0.388) TCGA-NC-A5HI-01 13 38160280 38160280 G C POSTN Silent p.S297S 0.31 TCGA-NC-A5HI-01 13 67799575 67799575 C A PCDH9 Nonsense_Mutation p.G1000* 0.30 TCGA-NC-A5HI-01 13 74420228 74420228 C T KLF12 Missense_Mutation p.A136T 0.40 tolerated(0.59) benign(0.003) TCGA-NC-A5HI-01 13 92345568 92345568 T A GPC5 Nonsense_Mutation p.Y151* 0.06 TCGA-NC-A5HI-01 13 98829137 98829137 G A RNF113B Silent p.T118T 0.23 TCGA-NC-A5HI-01 13 98829200 98829200 G T RNF113B Silent p.T97T 0.35 TCGA-NC-A5HI-01 14 102973932 102973932 C A ANKRD9 Missense_Mutation p.A99S 0.42 deleterious(0.01) possibly_damaging(0.756) TCGA-NC-A5HI-01 14 106321049 106321049 G T IGHM Missense_Mutation p.L314M 0.37 tolerated(0.18) benign(0.32) TCGA-NC-A5HI-01 14 106331408 106331408 C G IGHD7-27 3'Flank 0.31 TCGA-NC-A5HI-01 14 20020011 20020011 G A POTEM Silent p.P70P 0.05 TCGA-NC-A5HI-01 14 20296180 20296180 C A OR4N2 Missense_Mutation p.D191E 0.08 deleterious(0.02) possibly_damaging(0.454) TCGA-NC-A5HI-01 14 20403912 20403912 C A OR4K1 Silent p.A29A 0.11 TCGA-NC-A5HI-01 14 20611986 20611986 T A OR4N5 Missense_Mutation p.V31D 0.27 deleterious(0) benign(0.439) TCGA-NC-A5HI-01 14 20943360 20943360 G T PNP Nonsense_Mutation p.E201* 0.18 TCGA-NC-A5HI-01 14 20978915 20978915 G A RNASE10 Silent p.K95K 0.29 TCGA-NC-A5HI-01 14 21424332 21424332 T A RNASE2 Nonsense_Mutation p.Y134* 0.23 TCGA-NC-A5HI-01 14 21543022 21543022 G T ARHGEF40 Missense_Mutation p.G378V 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-NC-A5HI-01 14 22111775 22111775 G A TRAV1-2 Missense_Mutation p.D99N 0.31 deleterious(0) probably_damaging(0.993) TCGA-NC-A5HI-01 14 24701560 24701560 C A NEDD8 5'UTR 0.33 TCGA-NC-A5HI-01 14 25075742 25075742 C A GZMH 3'UTR 0.38 TCGA-NC-A5HI-01 14 32560006 32560006 C G ARHGAP5 Nonsense_Mutation p.S44* 0.41 TCGA-NC-A5HI-01 14 35497388 35497388 G C SRP54 Missense_Mutation p.M474I 0.23 tolerated(0.25) benign(0.003) TCGA-NC-A5HI-01 14 36192326 36192326 T C RALGAPA1 Missense_Mutation p.K671E 0.30 tolerated(0.16) probably_damaging(0.996) TCGA-NC-A5HI-01 14 38310651 38310651 C T TTC6 Missense_Mutation p.A1767V 0.16 deleterious(0) probably_damaging(0.919) TCGA-NC-A5HI-01 14 42356429 42356429 G C LRFN5 Missense_Mutation p.D201H 0.30 tolerated(0.06) probably_damaging(1) TCGA-NC-A5HI-01 14 62200933 62200933 C T HIF1A Nonsense_Mutation p.Q344* 0.20 TCGA-NC-A5HI-01 14 62550953 62550953 A C SYT16 Missense_Mutation p.S492R 0.32 deleterious(0.01) benign(0.114) TCGA-NC-A5HI-01 14 81743828 81743828 T C STON2 Silent p.A609A 0.23 TCGA-NC-A5HI-01 14 86088830 86088830 G C FLRT2 Missense_Mutation p.W324C 0.27 deleterious(0) probably_damaging(0.995) TCGA-NC-A5HI-01 14 88946408 88946408 T A PTPN21 Missense_Mutation p.K456M 0.32 deleterious(0) possibly_damaging(0.806) TCGA-NC-A5HI-01 14 94088144 94088144 G T UNC79 Missense_Mutation p.C1345F 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-NC-A5HI-01 15 20658906 20658906 C G HERC2P3 RNA 0.22 TCGA-NC-A5HI-01 15 23412250 23412250 G T RP11-467N20.5 Missense_Mutation p.N69K 0.19 benign(0.152) TCGA-NC-A5HI-01 15 34356047 34356047 G A CHRM5 Missense_Mutation p.V377M 0.35 tolerated(0.17) benign(0.078) TCGA-NC-A5HI-01 15 40754132 40754132 A G BAHD1 Missense_Mutation p.Q485R 0.32 tolerated(0.06) probably_damaging(0.978) TCGA-NC-A5HI-01 15 45415206 45415206 T C DUOXA1 Missense_Mutation p.T3A 0.43 tolerated_low_confidence(1) benign(0.001) TCGA-NC-A5HI-01 15 62994228 62994228 T C TLN2 Silent p.C578C 0.16 TCGA-NC-A5HI-01 15 67457284 67457284 C G SMAD3 Silent p.V86V 0.37 TCGA-NC-A5HI-01 15 79750468 79750468 C G KIAA1024 Missense_Mutation p.S660C 0.31 deleterious(0) probably_damaging(0.987) TCGA-NC-A5HI-01 16 15818201 15818201 C G MYH11 Missense_Mutation p.K1401N 0.34 probably_damaging(0.999) TCGA-NC-A5HI-01 16 1827251 1827251 G A SPSB3 Silent p.L305L 0.33 TCGA-NC-A5HI-01 16 22291631 22291631 C T EEF2K Silent p.L668L 0.28 TCGA-NC-A5HI-01 16 23999846 23999846 C A PRKCB Missense_Mutation p.H75N 0.25 deleterious(0) probably_damaging(1) TCGA-NC-A5HI-01 16 24950794 24950794 C T ARHGAP17 Missense_Mutation p.G539S 0.27 tolerated(0.22) benign(0.027) TCGA-NC-A5HI-01 16 28997895 28997895 G T LAT Intron 0.44 TCGA-NC-A5HI-01 16 3788617 3788617 C T CREBBP Missense_Mutation p.R1446H 0.61 unknown(0) TCGA-NC-A5HI-01 16 57693529 57693529 C T GPR56 Silent p.L503L 0.21 TCGA-NC-A5HI-01 16 66946575 66946576 GC - CDH16 Frame_Shift_Del p.A425Rfs*9 0.28 TCGA-NC-A5HI-01 16 67197503 67197503 C T FBXL8 Missense_Mutation p.T302I 0.25 deleterious(0) possibly_damaging(0.86) TCGA-NC-A5HI-01 16 74750378 74750378 C A FA2H Silent p.A302A 0.12 TCGA-NC-A5HI-01 16 81187696 81187696 G A PKD1L2 RNA 0.42 TCGA-NC-A5HI-01 16 8735029 8735029 G A METTL22 Missense_Mutation p.D272N 0.13 tolerated(0.09) benign(0.179) TCGA-NC-A5HI-01 16 89620325 89620325 G T SPG7 Missense_Mutation p.G687V 0.20 tolerated(0.08) possibly_damaging(0.899) TCGA-NC-A5HI-01 16 90109670 90109670 G A GAS8 Missense_Mutation p.V452M 0.12 tolerated(0.07) benign(0.004) TCGA-NC-A5HI-01 17 10355735 10355735 G T MYH4 Missense_Mutation p.Q1116K 0.26 deleterious(0) possibly_damaging(0.797) TCGA-NC-A5HI-01 17 10416245 10416245 C A MYH1 Missense_Mutation p.K281N 0.25 deleterious(0.04) benign(0.297) TCGA-NC-A5HI-01 17 16725469 16725469 C G AC022596.6 RNA 0.07 TCGA-NC-A5HI-01 17 18151269 18151269 C A FLII Missense_Mutation p.V757L 0.24 tolerated(0.68) benign(0.004) TCGA-NC-A5HI-01 17 18151270 18151270 C A FLII Missense_Mutation p.K756N 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.491) TCGA-NC-A5HI-01 17 21319025 21319025 T G KCNJ12 Missense_Mutation p.V124G 0.13 deleterious(0) probably_damaging(0.948) TCGA-NC-A5HI-01 17 27424314 27424314 T A MYO18A Missense_Mutation p.K1386M 0.21 deleterious(0) probably_damaging(1) TCGA-NC-A5HI-01 17 293193 293193 G A FAM101B Missense_Mutation p.T66M 0.05 deleterious(0.01) probably_damaging(0.984) TCGA-NC-A5HI-01 17 29509567 29509567 G T NF1 Nonsense_Mutation p.E258* 0.25 TCGA-NC-A5HI-01 17 29662045 29662045 G T NF1 Missense_Mutation p.G2001V 0.37 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HI-01 17 30535442 30535442 A G RHOT1 Intron 0.35 TCGA-NC-A5HI-01 17 37026492 37026492 A T LASP1 Missense_Mutation p.K17M 0.17 deleterious(0) probably_damaging(0.951) TCGA-NC-A5HI-01 17 37619159 37619160 - A CDK12 Nonsense_Mutation p.Y279* 0.17 TCGA-NC-A5HI-01 17 37790272 37790272 G T PPP1R1B Missense_Mutation p.E126D 0.09 tolerated(0.27) benign(0.008) TCGA-NC-A5HI-01 17 38133173 38133173 G A GSDMA Silent p.T400T 0.22 TCGA-NC-A5HI-01 17 40272308 40272308 G C KAT2A Missense_Mutation p.L182V 0.24 deleterious(0.03) probably_damaging(0.98) TCGA-NC-A5HI-01 17 41570159 41570159 G T DHX8 Missense_Mutation p.R205L 0.27 tolerated(0.08) unknown(0) TCGA-NC-A5HI-01 17 42168774 42168774 G A HDAC5 Silent p.F418F 0.31 TCGA-NC-A5HI-01 17 44806274 44806274 G A NSF Missense_Mutation p.V628I 0.23 deleterious(0.04) benign(0.314) TCGA-NC-A5HI-01 17 51900727 51900727 C A KIF2B Silent p.T111T 0.25 TCGA-NC-A5HI-01 17 56350237 56350237 G A MPO Missense_Mutation p.A555V 0.28 deleterious(0) probably_damaging(0.926) TCGA-NC-A5HI-01 17 56647846 56647846 C T TEX14 Splice_Site p.X1286_splice 0.24 TCGA-NC-A5HI-01 17 59445767 59445767 C A BCAS3 Silent p.S850S 0.23 TCGA-NC-A5HI-01 17 61895761 61895761 G T DDX42 3'UTR 0.23 TCGA-NC-A5HI-01 17 63685252 63685252 C A CEP112 Nonsense_Mutation p.E898* 0.28 TCGA-NC-A5HI-01 17 7412863 7412863 A G POLR2A Missense_Mutation p.D1242G 0.37 probably_damaging(0.968) TCGA-NC-A5HI-01 17 74922684 74922684 G A MGAT5B Missense_Mutation p.R399Q 0.36 tolerated(0.06) possibly_damaging(0.856) TCGA-NC-A5HI-01 17 7577556 7577556 C A TP53 Missense_Mutation p.C242F 0.24 deleterious(0) probably_damaging(1) TCGA-NC-A5HI-01 17 77757723 77757723 C T CBX2 Missense_Mutation p.R161W 0.30 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HI-01 18 14533170 14533170 A T POTEC Nonsense_Mutation p.C315* 0.16 TCGA-NC-A5HI-01 18 14757822 14757822 T C ANKRD30B Missense_Mutation p.L209P 0.12 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HI-01 18 29044329 29044329 G T DSG3 Missense_Mutation p.A419S 0.59 tolerated(0.08) benign(0.26) TCGA-NC-A5HI-01 18 347049 347049 A T COLEC12 Missense_Mutation p.N191K 0.38 tolerated(0.22) benign(0.264) TCGA-NC-A5HI-01 18 46447841 46447841 G A SMAD7 Silent p.T394T 0.43 TCGA-NC-A5HI-01 18 48604652 48604652 G T SMAD4 Missense_Mutation p.V492F 0.42 deleterious(0) probably_damaging(0.977) TCGA-NC-A5HI-01 18 52602150 52602150 C G CCDC68 Missense_Mutation p.L167F 0.39 tolerated(0.14) benign(0.226) TCGA-NC-A5HI-01 18 64172437 64172437 T C CDH19 Missense_Mutation p.E644G 0.08 deleterious(0.02) benign(0.09) TCGA-NC-A5HI-01 18 64211999 64211999 A G CDH19 Missense_Mutation p.I306T 0.83 tolerated(0.57) possibly_damaging(0.828) TCGA-NC-A5HI-01 18 64239298 64239298 G T CDH19 Missense_Mutation p.N48K 0.59 deleterious(0.04) benign(0.042) TCGA-NC-A5HI-01 19 12014515 12014515 G T ZNF69 Splice_Site p.X50_splice 0.26 TCGA-NC-A5HI-01 19 1467225 1467225 G A APC2 Missense_Mutation p.G1309R 0.36 possibly_damaging(0.634) TCGA-NC-A5HI-01 19 15535129 15535129 G C WIZ Missense_Mutation p.T697S 0.15 tolerated(0.35) benign(0.06) TCGA-NC-A5HI-01 19 17942151 17942151 A G JAK3 Missense_Mutation p.I955T 0.28 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HI-01 19 20236229 20236229 G T CTC-260E6.2 RNA 0.07 TCGA-NC-A5HI-01 19 21132010 21132010 C T ZNF85 Silent p.Y230Y 0.13 TCGA-NC-A5HI-01 19 22941437 22941437 C T ZNF99 Missense_Mutation p.C425Y 0.19 tolerated(1) benign(0.008) TCGA-NC-A5HI-01 19 2432442 2432442 T C LMNB2 Missense_Mutation p.Y521C 0.32 deleterious(0) probably_damaging(0.993) TCGA-NC-A5HI-01 19 30935594 30935594 C A ZNF536 Nonsense_Mutation p.C375* 0.35 TCGA-NC-A5HI-01 19 35613883 35613883 G T FXYD3 Intron 0.34 TCGA-NC-A5HI-01 19 35842681 35842681 C A FFAR1 Missense_Mutation p.A76D 0.23 tolerated(0.38) benign(0.023) TCGA-NC-A5HI-01 19 36341897 36341897 G A NPHS1 Silent p.D164D 0.06 TCGA-NC-A5HI-01 19 3746667 3746667 G A TJP3 Missense_Mutation p.R741Q 0.21 tolerated(0.08) benign(0.072) TCGA-NC-A5HI-01 19 39233670 39233670 C T CAPN12 Intron 0.16 TCGA-NC-A5HI-01 19 40904577 40904577 T C PRX Missense_Mutation p.T111A 0.13 tolerated(0.45) benign(0.388) TCGA-NC-A5HI-01 19 42132236 42132236 C - CEACAM4 Frame_Shift_Del p.A55Pfs*29 0.11 TCGA-NC-A5HI-01 19 42191059 42191059 A T CEACAM7 Missense_Mutation p.L53Q 0.20 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HI-01 19 4219740 4219740 G C ANKRD24 Missense_Mutation p.K1052N 0.25 deleterious(0) possibly_damaging(0.788) TCGA-NC-A5HI-01 19 4298016 4298016 C T TMIGD2 Missense_Mutation p.E125K 0.22 tolerated(0.52) benign(0.029) TCGA-NC-A5HI-01 19 44932807 44932808 - T ZNF229 Frame_Shift_Ins p.C717Mfs*13 0.16 TCGA-NC-A5HI-01 19 45021121 45021121 C A CEACAM20 RNA 0.27 TCGA-NC-A5HI-01 19 47858549 47858549 C G DHX34 Missense_Mutation p.S320C 0.27 deleterious(0.03) probably_damaging(0.968) TCGA-NC-A5HI-01 19 49416759 49416759 G T NUCB1 Missense_Mutation p.W232L 0.34 deleterious(0.02) probably_damaging(0.936) TCGA-NC-A5HI-01 19 50098261 50098261 G C PRR12 Missense_Mutation p.Q223H 0.18 benign(0.387) TCGA-NC-A5HI-01 19 50753816 50753816 G T MYH14 Missense_Mutation p.W567C 0.18 deleterious(0) probably_damaging(0.982) TCGA-NC-A5HI-01 19 51171793 51171793 G T SHANK1 Missense_Mutation p.P1142T 0.34 unknown(0) TCGA-NC-A5HI-01 19 52249222 52249222 A T FPR1 Silent p.S342S 0.15 TCGA-NC-A5HI-01 19 52519996 52519996 T C ZNF614 Silent p.K285K 0.33 TCGA-NC-A5HI-01 19 53887191 53887191 T A ZNF525 3'UTR 0.31 TCGA-NC-A5HI-01 19 54170001 54170001 G T MIR512-1 RNA 0.38 TCGA-NC-A5HI-01 19 54725974 54725974 G T LILRB3 Silent p.A128A 0.20 TCGA-NC-A5HI-01 19 55401185 55401185 C A FCAR Missense_Mutation p.Q274K 0.21 tolerated(0.11) benign(0.214) TCGA-NC-A5HI-01 19 55494071 55494071 C T NLRP2 Silent p.T335T 0.22 TCGA-NC-A5HI-01 19 55512234 55512234 G A NLRP2 Missense_Mutation p.E1053K 0.06 tolerated(1) benign(0) TCGA-NC-A5HI-01 19 56424570 56424570 G T NLRP13 Missense_Mutation p.R205S 0.29 tolerated(0.13) possibly_damaging(0.629) TCGA-NC-A5HI-01 19 57329126 57329126 T C PEG3 Missense_Mutation p.S284G 0.17 deleterious(0.01) possibly_damaging(0.632) TCGA-NC-A5HI-01 19 57931855 57931855 G A ZNF17 Missense_Mutation p.C332Y 0.29 deleterious(0) probably_damaging(0.963) TCGA-NC-A5HI-01 19 58189800 58189800 C G ZSCAN4 Missense_Mutation p.Q277E 0.31 tolerated(0.34) benign(0.001) TCGA-NC-A5HI-01 19 6501546 6501546 A T TUBB4A Missense_Mutation p.V49E 0.18 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-NC-A5HI-01 19 9048256 9048256 G T MUC16 Silent p.T11125T 0.23 TCGA-NC-A5HI-01 19 9068822 9068822 C T MUC16 Silent p.L6208L 0.15 TCGA-NC-A5HI-01 19 9070582 9070582 T C MUC16 Missense_Mutation p.T5622A 0.35 unknown(0) TCGA-NC-A5HI-01 19 9236989 9236989 C A OR7G3 Missense_Mutation p.G213V 0.31 deleterious(0.01) probably_damaging(1) TCGA-NC-A5HI-01 1 103488538 103488538 T C COL11A1 Silent p.E335E 0.32 TCGA-NC-A5HI-01 1 110919739 110919739 C T SLC16A4 Missense_Mutation p.D359N 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-NC-A5HI-01 1 111147035 111147035 C A KCNA2 Nonsense_Mutation p.E124* 0.23 TCGA-NC-A5HI-01 1 111854823 111854823 C A CHIA Missense_Mutation p.Q23K 0.27 tolerated(1) benign(0.005) TCGA-NC-A5HI-01 1 114246687 114246687 G C PHTF1 Intron 0.33 TCGA-NC-A5HI-01 1 114512595 114512595 G T HIPK1 Missense_Mutation p.R930M 0.30 deleterious(0) probably_damaging(0.995) TCGA-NC-A5HI-01 1 114641767 114641767 G C SYT6 Missense_Mutation p.P353R 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-NC-A5HI-01 1 114949670 114949670 C A TRIM33 Missense_Mutation p.D771Y 0.26 deleterious(0) possibly_damaging(0.819) TCGA-NC-A5HI-01 1 115251199 115251199 T A NRAS Missense_Mutation p.D176V 0.34 tolerated(0.14) benign(0) TCGA-NC-A5HI-01 1 1275008 1275008 G A DVL1 Silent p.A336A 0.43 TCGA-NC-A5HI-01 1 145116026 145116026 G T SEC22B RNA 0.16 TCGA-NC-A5HI-01 1 146751798 146751798 G T CHD1L Missense_Mutation p.D547Y 0.24 deleterious(0.01) benign(0.258) TCGA-NC-A5HI-01 1 151288388 151288388 C A PI4KB Silent p.V202V 0.29 TCGA-NC-A5HI-01 1 151509275 151509275 G A CGN Missense_Mutation p.G1126S 0.32 tolerated(0.21) benign(0.01) TCGA-NC-A5HI-01 1 151775062 151775062 T C LINGO4 Missense_Mutation p.Q40R 0.28 deleterious(0.04) benign(0.012) TCGA-NC-A5HI-01 1 155001832 155001832 G A DCST2 Silent p.L407L 0.23 TCGA-NC-A5HI-01 1 156268753 156268753 C A VHLL Missense_Mutation p.K76N 0.33 tolerated(0.1) benign(0.04) TCGA-NC-A5HI-01 1 157485471 157485471 G C FCRL5 Missense_Mutation p.H976Q 0.26 tolerated(0.06) benign(0.097) TCGA-NC-A5HI-01 1 157557199 157557199 T C FCRL4 Silent p.S238S 0.23 TCGA-NC-A5HI-01 1 157557200 157557200 G A FCRL4 Missense_Mutation p.S238L 0.23 tolerated(0.09) probably_damaging(0.985) TCGA-NC-A5HI-01 1 158654971 158654971 T A SPTA1 Missense_Mutation p.D64V 0.28 deleterious(0) probably_damaging(1) TCGA-NC-A5HI-01 1 158687829 158687829 A G OR6K3 Missense_Mutation p.L26P 0.32 deleterious(0.04) benign(0.062) TCGA-NC-A5HI-01 1 158815719 158815719 A G MNDA Missense_Mutation p.K305E 0.33 tolerated(1) benign(0.006) TCGA-NC-A5HI-01 1 158908242 158908242 G A PYHIN1 Silent p.T107T 0.20 TCGA-NC-A5HI-01 1 160187437 160187437 G C DCAF8 Nonsense_Mutation p.S734* 0.31 TCGA-NC-A5HI-01 1 163039231 163039231 G T RGS4 Missense_Mutation p.C83F 0.24 deleterious_low_confidence(0) benign(0.065) TCGA-NC-A5HI-01 1 169857878 169857878 T A SCYL3 Missense_Mutation p.K35I 0.34 deleterious(0) probably_damaging(0.972) TCGA-NC-A5HI-01 1 171254431 171254431 G T FMO1 Silent p.L449L 0.27 TCGA-NC-A5HI-01 1 171494081 171494081 G T PRRC2C Missense_Mutation p.G391W 0.19 unknown(0) TCGA-NC-A5HI-01 1 173879981 173879981 T A SERPINC1 Nonsense_Mutation p.K225* 0.04 TCGA-NC-A5HI-01 1 175063290 175063290 G C TNN Missense_Mutation p.V497L 0.19 tolerated(0.29) benign(0.02) TCGA-NC-A5HI-01 1 176664911 176664911 G T PAPPA2 Missense_Mutation p.G888W 0.27 deleterious(0) probably_damaging(1) TCGA-NC-A5HI-01 1 176671754 176671754 C A PAPPA2 Missense_Mutation p.P1083H 0.24 tolerated(0.32) probably_damaging(0.994) TCGA-NC-A5HI-01 1 18149557 18149557 C A ACTL8 Silent p.G18G 0.35 TCGA-NC-A5HI-01 1 181767876 181767876 A G CACNA1E Missense_Mutation p.Y2283C 0.20 tolerated(0.16) probably_damaging(0.941) TCGA-NC-A5HI-01 1 186141142 186141142 G T HMCN1 Silent p.V5231V 0.33 TCGA-NC-A5HI-01 1 19426924 19426924 C T UBR4 Silent p.K4389K 0.32 TCGA-NC-A5HI-01 1 19480406 19480408 AGG - UBR4 In_Frame_Del p.P2162del 0.13 TCGA-NC-A5HI-01 1 196398814 196398814 C T KCNT2 Missense_Mutation p.V238M 0.29 deleterious(0.01) possibly_damaging(0.683) TCGA-NC-A5HI-01 1 19666071 19666071 G C CAPZB 3'UTR 0.18 TCGA-NC-A5HI-01 1 197297791 197297791 G - CRB1 Frame_Shift_Del p.T105Qfs*43 0.22 TCGA-NC-A5HI-01 1 201039476 201039476 C A CACNA1S Missense_Mutation p.A762S 0.29 tolerated(1) possibly_damaging(0.601) TCGA-NC-A5HI-01 1 202270046 202270046 G T LGR6 Silent p.T285T 0.29 TCGA-NC-A5HI-01 1 202300827 202300827 C T UBE2T 3'UTR 0.33 TCGA-NC-A5HI-01 1 202532015 202532015 C T PPP1R12B Missense_Mutation p.R873C 0.15 deleterious(0) possibly_damaging(0.899) TCGA-NC-A5HI-01 1 203472845 203472845 G T OPTC Silent p.T332T 0.17 TCGA-NC-A5HI-01 1 204159599 204159599 C T KISS1 3'UTR 0.14 TCGA-NC-A5HI-01 1 207263827 207263827 G T C4BPB Splice_Site p.X78_splice 0.21 TCGA-NC-A5HI-01 1 207790034 207790034 G A CR1 Missense_Mutation p.R2259K 0.22 tolerated(0.19) benign(0.332) TCGA-NC-A5HI-01 1 207790060 207790060 G C CR1 Missense_Mutation p.E2268Q 0.20 tolerated(0.09) probably_damaging(0.991) TCGA-NC-A5HI-01 1 209933343 209933343 C A TRAF3IP3 5'UTR 0.17 TCGA-NC-A5HI-01 1 213032109 213032109 G T FLVCR1 Silent p.P105P 0.26 TCGA-NC-A5HI-01 1 216462669 216462669 C A USH2A Missense_Mutation p.D642Y 0.25 possibly_damaging(0.781) TCGA-NC-A5HI-01 1 22965404 22965404 A G C1QA Missense_Mutation p.K81R 0.36 tolerated(0.51) benign(0.068) TCGA-NC-A5HI-01 1 236647672 236647672 G T EDARADD 3'Flank 0.21 TCGA-NC-A5HI-01 1 237801785 237801785 C A RYR2 Missense_Mutation p.F2307L 0.24 probably_damaging(0.997) TCGA-NC-A5HI-01 1 238053832 238053832 C G ZP4 Missense_Mutation p.G35A 0.32 deleterious(0) probably_damaging(0.968) TCGA-NC-A5HI-01 1 247588875 247588875 C A NLRP3 Missense_Mutation p.S710R 0.16 tolerated(0.51) benign(0) TCGA-NC-A5HI-01 1 247614943 247614943 C A OR2B11 Silent p.T114T 0.16 TCGA-NC-A5HI-01 1 248525769 248525769 C A OR2T4 Missense_Mutation p.S296Y 0.18 deleterious(0.01) probably_damaging(0.977) TCGA-NC-A5HI-01 1 25233851 25233851 A T RUNX3 Missense_Mutation p.L215Q 0.32 deleterious(0) probably_damaging(0.959) TCGA-NC-A5HI-01 1 31840257 31840257 C G FABP3 Missense_Mutation p.D111H 0.25 deleterious(0) probably_damaging(0.925) TCGA-NC-A5HI-01 1 36230869 36230869 G C CLSPN Nonsense_Mutation p.S28* 0.23 TCGA-NC-A5HI-01 1 42621306 42621306 G A GUCA2B 3'UTR 0.25 TCGA-NC-A5HI-01 1 43854042 43854042 G C MED8 Missense_Mutation p.L22V 0.19 deleterious(0.05) benign(0.061) TCGA-NC-A5HI-01 1 46495142 46495142 G C MAST2 Missense_Mutation p.E741D 0.23 tolerated_low_confidence(0.31) benign(0.09) TCGA-NC-A5HI-01 1 46871102 46871102 G T FAAH Missense_Mutation p.S168I 0.23 deleterious(0.03) benign(0.055) TCGA-NC-A5HI-01 1 53282299 53282299 A G ZYG11B Missense_Mutation p.N681S 0.22 deleterious(0.01) benign(0.003) TCGA-NC-A5HI-01 1 54060152 54060152 C - GLIS1 Frame_Shift_Del p.A142Rfs*4 0.17 TCGA-NC-A5HI-01 1 57158120 57158120 G C PRKAA2 Silent p.L140L 0.35 TCGA-NC-A5HI-01 1 66070884 66070884 G T LEPR Missense_Mutation p.D523Y 0.25 deleterious(0) possibly_damaging(0.781) TCGA-NC-A5HI-01 1 70257830 70257830 C A LRRC7 Missense_Mutation p.D98E 0.27 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HI-01 1 72163744 72163744 G T NEGR1 Missense_Mutation p.A205E 0.25 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HI-01 1 74836016 74836016 C - FPGT-TNNI3K Frame_Shift_Del p.G687Afs*8 0.24 TCGA-NC-A5HI-01 1 75037706 75037706 G C C1orf173 Missense_Mutation p.P1230A 0.28 deleterious(0.02) benign(0.322) TCGA-NC-A5HI-01 1 78511915 78511915 C G GIPC2 Missense_Mutation p.A46G 0.16 deleterious(0.02) benign(0.3) TCGA-NC-A5HI-01 1 84417651 84417651 C T TTLL7 Missense_Mutation p.G12R 0.36 tolerated_low_confidence(0.12) benign(0.007) TCGA-NC-A5HI-01 1 91727872 91727873 - A HFM1 Frame_Shift_Ins p.N1390Kfs*6 0.31 TCGA-NC-A5HI-01 20 10639352 10639352 T C JAG1 Missense_Mutation p.E153G 0.07 tolerated(0.08) possibly_damaging(0.662) TCGA-NC-A5HI-01 20 13695788 13695788 C A ESF1 Missense_Mutation p.Q763H 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-NC-A5HI-01 20 20033134 20033134 C G CRNKL1 Silent p.A112A 0.34 TCGA-NC-A5HI-01 20 239751 239751 C A DEFB132 Missense_Mutation p.T31N 0.20 tolerated(0.28) benign(0.127) TCGA-NC-A5HI-01 20 2413173 2413173 C A TGM6 Missense_Mutation p.Q669K 0.22 tolerated(0.84) benign(0.004) TCGA-NC-A5HI-01 20 25187979 25187979 G T ENTPD6 Missense_Mutation p.A108S 0.25 deleterious(0) probably_damaging(1) TCGA-NC-A5HI-01 20 35545172 35545172 G A SAMHD1 Missense_Mutation p.R339C 0.26 deleterious(0) possibly_damaging(0.706) TCGA-NC-A5HI-01 20 35684015 35684015 T C RBL1 Missense_Mutation p.K470E 0.09 deleterious(0) possibly_damaging(0.79) TCGA-NC-A5HI-01 20 40102131 40102131 C A CHD6 Missense_Mutation p.R832L 0.22 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HI-01 20 47605821 47605821 G C ARFGEF2 Splice_Site p.X845_splice 0.25 TCGA-NC-A5HI-01 20 5283017 5283017 A T PROKR2 Missense_Mutation p.L275Q 0.27 deleterious(0.03) benign(0.219) TCGA-NC-A5HI-01 20 55982632 55982632 C G RBM38 Missense_Mutation p.I150M 0.17 tolerated(0.16) probably_damaging(0.916) TCGA-NC-A5HI-01 20 61944492 61944492 C A COL20A1 Silent p.G700G 0.32 TCGA-NC-A5HI-01 20 62038665 62038665 G T KCNQ2 Missense_Mutation p.P651T 0.05 tolerated(0.3) benign(0.044) TCGA-NC-A5HI-01 20 62193473 62193473 C T HELZ2 Missense_Mutation p.V2161I 0.09 tolerated(0.99) benign(0.083) TCGA-NC-A5HI-01 21 34399313 34399313 C G OLIG2 Missense_Mutation p.P48R 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.721) TCGA-NC-A5HI-01 21 34927125 34927125 C G SON Nonsense_Mutation p.S1863* 0.13 TCGA-NC-A5HI-01 21 45821642 45821642 C A TRPM2 Missense_Mutation p.H800Q 0.15 tolerated(0.14) benign(0.008) TCGA-NC-A5HI-01 22 20779793 20779793 C G SCARF2 Missense_Mutation p.E829Q 0.30 tolerated(0.3) benign(0.02) TCGA-NC-A5HI-01 22 23214088 23214088 C T IGLV4-3 Missense_Mutation p.P82L 0.32 deleterious(0.01) possibly_damaging(0.861) TCGA-NC-A5HI-01 22 35743143 35743143 G T TOM1 Missense_Mutation p.G475C 0.27 deleterious(0.01) possibly_damaging(0.885) TCGA-NC-A5HI-01 22 38106527 38106527 G A TRIOBP Missense_Mutation p.G70S 0.14 tolerated_low_confidence(0.43) benign(0.005) TCGA-NC-A5HI-01 22 42473647 42473647 C - FAM109B Frame_Shift_Del p.R118Gfs*93 0.25 TCGA-NC-A5HI-01 22 44022455 44022455 G T EFCAB6 Missense_Mutation p.D779E 0.23 tolerated(0.18) benign(0.046) TCGA-NC-A5HI-01 22 44966412 44966412 C T LINC00207 RNA 0.24 TCGA-NC-A5HI-01 22 45818271 45818271 G C RIBC2 Missense_Mutation p.D215H 0.27 deleterious(0) possibly_damaging(0.754) TCGA-NC-A5HI-01 22 46787108 46787108 C T CELSR1 Silent p.A2075A 0.10 TCGA-NC-A5HI-01 2 102781669 102781669 A T IL1R1 Nonsense_Mutation p.K131* 0.42 TCGA-NC-A5HI-01 2 112834818 112834818 C T TMEM87B Missense_Mutation p.S184F 0.24 tolerated(0.09) possibly_damaging(0.866) TCGA-NC-A5HI-01 2 11356328 11356328 C A ROCK2 Missense_Mutation p.V473F 0.17 tolerated(0.21) benign(0.018) TCGA-NC-A5HI-01 2 116497426 116497426 C A DPP10 Missense_Mutation p.T274N 0.32 deleterious(0.02) benign(0.192) TCGA-NC-A5HI-01 2 125367447 125367447 C A CNTNAP5 Nonsense_Mutation p.S608* 0.24 TCGA-NC-A5HI-01 2 128390902 128390902 C A MYO7B Silent p.I1799I 0.27 TCGA-NC-A5HI-01 2 136536644 136536644 T C UBXN4 Silent p.L394L 0.33 TCGA-NC-A5HI-01 2 141773278 141773278 C A LRP1B Missense_Mutation p.G726V 0.21 probably_damaging(0.953) TCGA-NC-A5HI-01 2 141773279 141773279 C A LRP1B Missense_Mutation p.G726W 0.21 probably_damaging(0.965) TCGA-NC-A5HI-01 2 145157017 145157017 A G ZEB2 Silent p.T579T 0.31 TCGA-NC-A5HI-01 2 158181191 158181191 A G ERMN Missense_Mutation p.F122L 0.14 tolerated(0.43) benign(0.034) TCGA-NC-A5HI-01 2 162902048 162902048 G A DPP4 Silent p.Y120Y 0.41 TCGA-NC-A5HI-01 2 168096477 168096477 T A XIRP2 Splice_Site p.X323_splice 0.30 TCGA-NC-A5HI-01 2 171248984 171248984 G T MYO3B Missense_Mutation p.R590S 0.19 deleterious(0.05) benign(0.016) TCGA-NC-A5HI-01 2 176965022 176965022 G A HOXD12 Missense_Mutation p.D165N 0.11 tolerated(0.26) benign(0.322) TCGA-NC-A5HI-01 2 179418684 179418684 T C TTN Silent p.P29718P 0.26 TCGA-NC-A5HI-01 2 179424497 179424497 A C TTN Missense_Mutation p.W28788G 0.26 TCGA-NC-A5HI-01 2 179434428 179434428 G T TTN Nonsense_Mutation p.Y25477* 0.14 TCGA-NC-A5HI-01 2 179544134 179544134 A G TTN Missense_Mutation p.V11225A 0.28 TCGA-NC-A5HI-01 2 207172870 207172870 T C ZDBF2 Silent p.P1206P 0.21 TCGA-NC-A5HI-01 2 207988558 207988558 C A KLF7 Missense_Mutation p.G225W 0.24 deleterious(0) probably_damaging(1) TCGA-NC-A5HI-01 2 211456558 211456558 G T CPS1 Silent p.G323G 0.29 TCGA-NC-A5HI-01 2 220164475 220164475 C T PTPRN Silent p.L490L 0.21 TCGA-NC-A5HI-01 2 220431735 220431735 C A OBSL1 Missense_Mutation p.G651W 0.23 deleterious(0) probably_damaging(1) TCGA-NC-A5HI-01 2 220462620 220462620 G T STK11IP 5'UTR 0.30 TCGA-NC-A5HI-01 2 223160357 223160357 A T PAX3 Missense_Mutation p.V114E 0.23 deleterious(0) probably_damaging(0.924) TCGA-NC-A5HI-01 2 227895249 227895249 C A COL4A4 Missense_Mutation p.G1295C 0.21 unknown(0) TCGA-NC-A5HI-01 2 228476215 228476215 G T C2orf83 Missense_Mutation p.N116K 0.26 deleterious_low_confidence(0) benign(0.403) TCGA-NC-A5HI-01 2 233245961 233245961 G T ALPP Missense_Mutation p.G398V 0.16 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HI-01 2 242683054 242683054 G C D2HGDH Missense_Mutation p.A170P 0.25 deleterious(0.01) possibly_damaging(0.529) TCGA-NC-A5HI-01 2 33623595 33623595 G T LTBP1 Missense_Mutation p.D1717Y 0.21 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-NC-A5HI-01 2 39237746 39237746 T C SOS1 Missense_Mutation p.N830S 0.23 deleterious(0.02) possibly_damaging(0.654) TCGA-NC-A5HI-01 2 40656060 40656060 C G SLC8A1 Missense_Mutation p.G454A 0.18 deleterious(0) possibly_damaging(0.871) TCGA-NC-A5HI-01 2 44032364 44032364 G A DYNC2LI1 Silent p.E324E 0.34 TCGA-NC-A5HI-01 2 45233411 45233411 C T SIX2 Silent p.P258P 0.33 TCGA-NC-A5HI-01 2 48061844 48061844 C T FBXO11 Missense_Mutation p.D270N 0.14 tolerated(0.21) possibly_damaging(0.554) TCGA-NC-A5HI-01 2 69002352 69002352 G C ARHGAP25 Splice_Site p.X21_splice 0.30 TCGA-NC-A5HI-01 2 69734646 69734646 C A AAK1 Nonsense_Mutation p.E691* 0.19 TCGA-NC-A5HI-01 2 72359686 72359686 C G CYP26B1 Silent p.A403A 0.27 TCGA-NC-A5HI-01 2 79253135 79253135 A G REG3G 5'UTR 0.36 TCGA-NC-A5HI-01 2 79364417 79364417 C A REG1P RNA 0.23 TCGA-NC-A5HI-01 2 95539742 95539742 T C TEKT4 Missense_Mutation p.M201T 0.38 deleterious(0.03) possibly_damaging(0.826) TCGA-NC-A5HI-01 3 100029285 100029285 A G TBC1D23 Silent p.K484K 0.21 TCGA-NC-A5HI-01 3 100645222 100645222 C A ABI3BP Silent p.L68L 0.21 TCGA-NC-A5HI-01 3 101086826 101086826 G A SENP7 Missense_Mutation p.H276Y 0.20 tolerated(0.68) benign(0.002) TCGA-NC-A5HI-01 3 108129446 108129446 C T MYH15 Silent p.E1513E 0.16 TCGA-NC-A5HI-01 3 118645039 118645039 C G IGSF11 Silent p.L163L 0.23 TCGA-NC-A5HI-01 3 121206290 121206290 C A POLQ Missense_Mutation p.V1830L 0.39 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HI-01 3 134644662 134644662 G T EPHB1 Silent p.T21T 0.25 TCGA-NC-A5HI-01 3 147128445 147128445 C A ZIC1 Silent p.T182T 0.24 TCGA-NC-A5HI-01 3 150263953 150263953 C A SERP1 5'UTR 0.07 TCGA-NC-A5HI-01 3 152058195 152058195 A G TMEM14E 3'UTR 0.27 TCGA-NC-A5HI-01 3 15262287 15262287 G C CAPN7 Splice_Site p.X146_splice 0.40 TCGA-NC-A5HI-01 3 160021756 160021756 T G IFT80 Silent p.P366P 0.16 TCGA-NC-A5HI-01 3 164735363 164735363 G C SI Missense_Mutation p.D1244E 0.37 tolerated(0.75) benign(0.001) TCGA-NC-A5HI-01 3 164908293 164908293 C A SLITRK3 Missense_Mutation p.G109V 0.26 deleterious(0) probably_damaging(1) TCGA-NC-A5HI-01 3 170219087 170219087 A G SLC7A14 Missense_Mutation p.S118P 0.09 deleterious(0) probably_damaging(1) TCGA-NC-A5HI-01 3 178525177 178525177 C A KCNMB2 5'UTR 0.26 TCGA-NC-A5HI-01 3 183479887 183479887 G A YEATS2 Silent p.V589V 0.11 TCGA-NC-A5HI-01 3 192516124 192516124 C A MB21D2 3'UTR 0.29 TCGA-NC-A5HI-01 3 193036817 193036817 T G ATP13A5 Missense_Mutation p.K666Q 0.16 tolerated(0.17) benign(0.039) TCGA-NC-A5HI-01 3 196807989 196807989 C G DLG1 Splice_Site p.X646_splice 0.16 TCGA-NC-A5HI-01 3 30045458 30045458 T G RBMS3 3'UTR 0.29 TCGA-NC-A5HI-01 3 36587761 36587761 G C STAC Missense_Mutation p.D397H 0.33 deleterious(0) probably_damaging(0.962) TCGA-NC-A5HI-01 3 37034289 37034289 C T EPM2AIP1 Missense_Mutation p.E94K 0.47 tolerated(0.45) probably_damaging(0.962) TCGA-NC-A5HI-01 3 38596010 38596010 C A SCN5A Missense_Mutation p.V1525L 0.39 deleterious(0) possibly_damaging(0.511) TCGA-NC-A5HI-01 3 38913180 38913180 A T SCN11A Missense_Mutation p.I1172K 0.52 deleterious(0) possibly_damaging(0.832) TCGA-NC-A5HI-01 3 40464459 40464459 A C ENTPD3 Missense_Mutation p.Y317S 0.48 deleterious(0.01) probably_damaging(0.984) TCGA-NC-A5HI-01 3 57135261 57135261 G A IL17RD Silent p.H370H 0.30 TCGA-NC-A5HI-01 3 73432756 73432756 C G PDZRN3 Missense_Mutation p.E987D 0.38 tolerated(0.08) probably_damaging(0.998) TCGA-NC-A5HI-01 3 93733422 93733422 T A STX19 Missense_Mutation p.D231V 0.33 deleterious(0) probably_damaging(0.958) TCGA-NC-A5HI-01 3 98241709 98241709 C A CLDND1 5'UTR 0.22 TCGA-NC-A5HI-01 3 98241710 98241710 C A CLDND1 5'UTR 0.23 TCGA-NC-A5HI-01 4 104081916 104081916 A T CENPE Missense_Mutation p.L718M 0.58 probably_damaging(0.99) TCGA-NC-A5HI-01 4 110791020 110791020 G C LRIT3 Missense_Mutation p.G372A 0.45 tolerated(0.16) possibly_damaging(0.54) TCGA-NC-A5HI-01 4 113352006 113352006 G T ALPK1 Nonsense_Mutation p.E435* 0.41 TCGA-NC-A5HI-01 4 119059214 119059214 C G NDST3 Missense_Mutation p.H410Q 0.44 tolerated(0.05) probably_damaging(0.952) TCGA-NC-A5HI-01 4 123542083 123542083 G T IL21 Missense_Mutation p.S28R 0.43 deleterious(0.01) possibly_damaging(0.889) TCGA-NC-A5HI-01 4 128635112 128635112 G C INTU Missense_Mutation p.G861R 0.44 tolerated(0.61) benign(0.004) TCGA-NC-A5HI-01 4 144460047 144460047 T A SMARCA5 Missense_Mutation p.L576M 0.54 deleterious(0.04) possibly_damaging(0.753) TCGA-NC-A5HI-01 4 151656449 151656449 C T LRBA Silent p.R1905R 0.38 TCGA-NC-A5HI-01 4 169377205 169377205 C A DDX60L Missense_Mutation p.M274I 0.38 tolerated(0.34) benign(0.027) TCGA-NC-A5HI-01 4 171008267 171008267 C G AADAT Missense_Mutation p.K123N 0.43 deleterious(0.03) probably_damaging(0.997) TCGA-NC-A5HI-01 4 1808661 1808661 C T FGFR3 Silent p.D760D 0.33 TCGA-NC-A5HI-01 4 183713922 183713922 G T TENM3 Missense_Mutation p.V2033L 0.47 tolerated(0.05) benign(0.417) TCGA-NC-A5HI-01 4 38775775 38775775 A T TLR10 Silent p.T479T 0.43 TCGA-NC-A5HI-01 4 46125924 46125924 G T GABRG1 Missense_Mutation p.P3T 0.35 tolerated_low_confidence(0.06) benign(0) TCGA-NC-A5HI-01 4 47538827 47538827 T G ATP10D Missense_Mutation p.L423R 0.30 deleterious(0) probably_damaging(1) TCGA-NC-A5HI-01 4 52861338 52861338 T A LRRC66 Missense_Mutation p.Q617L 0.43 tolerated(0.4) benign(0.326) TCGA-NC-A5HI-01 4 62758434 62758434 C A LPHN3 Missense_Mutation p.T446N 0.40 tolerated(0.19) benign(0.019) TCGA-NC-A5HI-01 4 62758435 62758435 C A LPHN3 Silent p.T446T 0.41 TCGA-NC-A5HI-01 4 68938098 68938098 T A TMPRSS11F Missense_Mutation p.S153C 0.40 deleterious(0) possibly_damaging(0.8) TCGA-NC-A5HI-01 4 71629271 71629271 A - RUFY3 Frame_Shift_Del p.T121Lfs*13 0.09 TCGA-NC-A5HI-01 4 98480180 98480180 G T STPG2 3'UTR 0.51 TCGA-NC-A5HI-01 5 121356196 121356196 G A SRFBP1 Missense_Mutation p.E256K 0.29 tolerated(0.09) benign(0.4) TCGA-NC-A5HI-01 5 126860440 126860440 A T PRRC1 Silent p.V107V 0.41 TCGA-NC-A5HI-01 5 137733982 137733982 G C KDM3B Missense_Mutation p.D983H 0.16 deleterious(0) probably_damaging(0.995) TCGA-NC-A5HI-01 5 140237075 140237075 C T PCDHA10 Missense_Mutation p.A481V 0.24 deleterious_low_confidence(0.04) benign(0.192) TCGA-NC-A5HI-01 5 140250126 140250126 G A PCDHA11 Missense_Mutation p.D480N 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-NC-A5HI-01 5 140256407 140256407 C T PCDHA12 Silent p.D450D 0.31 TCGA-NC-A5HI-01 5 140503613 140503613 C T PCDHB4 Missense_Mutation p.A678V 0.22 tolerated_low_confidence(0.17) benign(0.002) TCGA-NC-A5HI-01 5 140531493 140531493 C T PCDHB6 Missense_Mutation p.A552V 0.24 tolerated(0.2) benign(0.048) TCGA-NC-A5HI-01 5 140531797 140531797 C T PCDHB6 Silent p.T653T 0.17 TCGA-NC-A5HI-01 5 140557946 140557946 C A PCDHB8 Missense_Mutation p.L111I 0.13 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-NC-A5HI-01 5 140719585 140719585 G A PCDHGA2 Missense_Mutation p.M349I 0.17 tolerated_low_confidence(1) benign(0.003) TCGA-NC-A5HI-01 5 145718792 145718792 G T POU4F3 Silent p.P39P 0.33 TCGA-NC-A5HI-01 5 147889397 147889397 C A HTR4 Missense_Mutation p.G233V 0.40 tolerated(0.17) benign(0.393) TCGA-NC-A5HI-01 5 150563175 150563175 C A CCDC69 Missense_Mutation p.R238S 0.38 deleterious(0) probably_damaging(0.939) TCGA-NC-A5HI-01 5 150901540 150901541 - ATGAA FAT2 Frame_Shift_Ins p.T3539Sfs*28 0.33 TCGA-NC-A5HI-01 5 154254881 154254881 A G CNOT8 Missense_Mutation p.K254R 0.18 tolerated(0.1) possibly_damaging(0.477) TCGA-NC-A5HI-01 5 156378598 156378598 G T TIMD4 Missense_Mutation p.P202T 0.22 tolerated(0.52) benign(0.23) TCGA-NC-A5HI-01 5 157166475 157166475 A G THG1L Silent p.L294L 0.40 TCGA-NC-A5HI-01 5 168098276 168098276 C A SLIT3 Missense_Mutation p.V1352L 0.39 tolerated(0.18) benign(0.052) TCGA-NC-A5HI-01 5 173376601 173376601 G C CPEB4 Splice_Site p.X516_splice 0.42 TCGA-NC-A5HI-01 5 24487688 24487688 T A CDH10 3'UTR 0.17 TCGA-NC-A5HI-01 5 24491746 24491746 G T CDH10 Silent p.L605L 0.18 TCGA-NC-A5HI-01 5 32774859 32774859 G A NPR3 Missense_Mutation p.V369I 0.21 deleterious(0) benign(0.167) TCGA-NC-A5HI-01 5 40852822 40852822 G T CARD6 Missense_Mutation p.C463F 0.20 deleterious(0.02) possibly_damaging(0.7) TCGA-NC-A5HI-01 5 40955531 40955531 G T C7 Missense_Mutation p.G379V 0.22 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HI-01 5 5303573 5303573 C T ADAMTS16 Silent p.P994P 0.32 TCGA-NC-A5HI-01 5 60053367 60053367 C A ELOVL7 Missense_Mutation p.W202L 0.40 deleterious(0) probably_damaging(0.952) TCGA-NC-A5HI-01 5 67591007 67591007 C T PIK3R1 Nonsense_Mutation p.R534* 0.10 TCGA-NC-A5HI-01 5 68492913 68492913 G A CENPH Silent p.L116L 0.24 TCGA-NC-A5HI-01 5 68492914 68492914 G A CENPH Missense_Mutation p.E117K 0.24 tolerated(0.44) benign(0.111) TCGA-NC-A5HI-01 5 72469279 72469279 G A TMEM174 Nonsense_Mutation p.W70* 0.22 TCGA-NC-A5HI-01 5 75932923 75932923 T C IQGAP2 Silent p.T615T 0.18 TCGA-NC-A5HI-01 5 78324403 78324403 C T DMGDH Missense_Mutation p.V629I 0.24 deleterious(0.02) possibly_damaging(0.842) TCGA-NC-A5HI-01 5 96364236 96364236 A T LNPEP Nonstop_Mutation p.*1026Lext*82 0.26 TCGA-NC-A5HI-01 6 10586330 10586330 G C GCNT2 Intron 0.19 TCGA-NC-A5HI-01 6 109954289 109954289 T A AK9 Missense_Mutation p.Y364F 0.08 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HI-01 6 112389600 112389600 A C WISP3 Missense_Mutation p.K279T 0.17 deleterious(0) possibly_damaging(0.736) TCGA-NC-A5HI-01 6 112435334 112435334 G T LAMA4 Silent p.P1757P 0.22 TCGA-NC-A5HI-01 6 112462066 112462066 C A LAMA4 Nonsense_Mutation p.E958* 0.38 TCGA-NC-A5HI-01 6 112462068 112462068 T A LAMA4 Missense_Mutation p.E957V 0.40 deleterious(0) probably_damaging(1) TCGA-NC-A5HI-01 6 11778957 11778957 A G ADTRP Silent p.L12L 0.36 TCGA-NC-A5HI-01 6 12015803 12015803 T C HIVEP1 5'UTR 0.27 TCGA-NC-A5HI-01 6 123038963 123038963 G T PKIB Missense_Mutation p.M15I 0.33 deleterious(0) possibly_damaging(0.878) TCGA-NC-A5HI-01 6 123318869 123318870 - T CLVS2 5'UTR 0.29 TCGA-NC-A5HI-01 6 126210189 126210189 A C NCOA7 Missense_Mutation p.K330T 0.23 tolerated(0.09) possibly_damaging(0.653) TCGA-NC-A5HI-01 6 131602779 131602779 G T AKAP7 Missense_Mutation p.Q320H 0.40 deleterious(0) probably_damaging(0.947) TCGA-NC-A5HI-01 6 132874539 132874539 A T TAAR8 Missense_Mutation p.K236N 0.31 tolerated(0.15) benign(0.033) TCGA-NC-A5HI-01 6 133043981 133043981 C G VNN3 3'Flank 0.29 TCGA-NC-A5HI-01 6 137482891 137482892 - C IL22RA2 5'UTR 0.23 TCGA-NC-A5HI-01 6 138608228 138608228 G C KIAA1244 Missense_Mutation p.A935P 0.30 deleterious(0.01) probably_damaging(1) TCGA-NC-A5HI-01 6 157527978 157527978 T G ARID1B Missense_Mutation p.S1901R 0.21 benign(0.387) TCGA-NC-A5HI-01 6 158449952 158449952 G T SYNJ2 Missense_Mutation p.G127W 0.28 deleterious(0) probably_damaging(1) TCGA-NC-A5HI-01 6 163235225 163235225 A T PACRG Missense_Mutation p.K68M 0.15 deleterious(0.03) possibly_damaging(0.634) TCGA-NC-A5HI-01 6 166571956 166571956 G T T Silent p.P385P 0.27 TCGA-NC-A5HI-01 6 166579224 166579224 G A T Silent p.F192F 0.31 TCGA-NC-A5HI-01 6 168351975 168351975 A G MLLT4 Missense_Mutation p.N1307S 0.27 tolerated_low_confidence(0.31) benign(0.138) TCGA-NC-A5HI-01 6 25924028 25924028 C A SLC17A2 Missense_Mutation p.M45I 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-NC-A5HI-01 6 26056547 26056547 C T HIST1H1C Missense_Mutation p.G37D 0.25 deleterious(0.01) possibly_damaging(0.665) TCGA-NC-A5HI-01 6 26508868 26508868 C G BTN1A1 Silent p.G349G 0.13 TCGA-NC-A5HI-01 6 28053662 28053663 TA AAC ZNF165 Frame_Shift_Ins p.V135Efs*8 0.20 TCGA-NC-A5HI-01 6 31597075 31597075 G C PRRC2A Missense_Mutation p.Q640H 0.31 benign(0.216) TCGA-NC-A5HI-01 6 31608711 31608711 C A BAG6 Missense_Mutation p.R901L 0.20 deleterious(0) probably_damaging(0.968) TCGA-NC-A5HI-01 6 33632729 33632729 C T ITPR3 Missense_Mutation p.R411W 0.26 deleterious(0) probably_damaging(0.946) TCGA-NC-A5HI-01 6 43164599 43164599 A T CUL9 Silent p.A934A 0.31 TCGA-NC-A5HI-01 6 45296221 45296221 T C RUNX2 5'UTR 0.25 TCGA-NC-A5HI-01 6 46874512 46874512 G C GPR116 5'UTR 0.26 TCGA-NC-A5HI-01 6 56480400 56480400 T A DST Intron 0.26 TCGA-NC-A5HI-01 6 73919590 73919590 T A RP11-257K9.8 3'UTR 0.25 TCGA-NC-A5HI-01 6 74073652 74073652 G T KHDC3L 3'UTR 0.44 TCGA-NC-A5HI-01 6 97053901 97053901 C A FHL5 Missense_Mutation p.P153Q 0.30 deleterious(0.02) probably_damaging(0.945) TCGA-NC-A5HI-01 6 99282948 99282948 C A POU3F2 Missense_Mutation p.H67N 0.24 deleterious_low_confidence(0) benign(0.006) TCGA-NC-A5HI-01 7 100452355 100452355 G T SLC12A9 Missense_Mutation p.V99L 0.64 tolerated(0.63) benign(0.312) TCGA-NC-A5HI-01 7 103020975 103020975 T C SLC26A5 Silent p.G512G 0.49 TCGA-NC-A5HI-01 7 128040234 128040234 C T IMPDH1 Silent p.V263V 0.44 TCGA-NC-A5HI-01 7 144060843 144060843 G A ARHGEF5 Missense_Mutation p.D361N 0.62 tolerated(0.2) benign(0.002) TCGA-NC-A5HI-01 7 146997232 146997232 G T CNTNAP2 Splice_Site p.X450_splice 0.57 TCGA-NC-A5HI-01 7 150489144 150489144 C A TMEM176B Silent p.L240L 0.64 TCGA-NC-A5HI-01 7 43484403 43484403 G T HECW1 Silent p.T544T 0.57 TCGA-NC-A5HI-01 7 44574134 44574134 C T NPC1L1 Missense_Mutation p.R693H 0.05 deleterious(0) possibly_damaging(0.627) TCGA-NC-A5HI-01 7 44737035 44737035 C G OGDH Silent p.L706L 0.08 TCGA-NC-A5HI-01 7 5104056 5104056 G T RBAK Silent p.G323G 0.60 TCGA-NC-A5HI-01 7 57187644 57187644 T - ZNF479 Frame_Shift_Del p.Y493Sfs*21 0.33 TCGA-NC-A5HI-01 7 57187790 57187790 T A ZNF479 Missense_Mutation p.K444N 0.60 deleterious(0.02) possibly_damaging(0.855) TCGA-NC-A5HI-01 7 57194361 57194361 C T ZNF479 Missense_Mutation p.C35Y 0.64 tolerated(0.05) benign(0.185) TCGA-NC-A5HI-01 7 87011853 87011853 A C CROT Missense_Mutation p.H460P 0.12 deleterious(0) probably_damaging(0.972) TCGA-NC-A5HI-01 7 92762373 92762373 A G SAMD9L Missense_Mutation p.L971P 0.62 deleterious(0) probably_damaging(0.99) TCGA-NC-A5HI-01 7 92861664 92861664 G A CCDC132 5'UTR 0.61 TCGA-NC-A5HI-01 8 102381386 102381386 T C NACAP1 RNA 0.13 TCGA-NC-A5HI-01 8 113363439 113363439 A G CSMD3 Missense_Mutation p.V2097A 0.16 deleterious(0) probably_damaging(0.926) TCGA-NC-A5HI-01 8 117738402 117738402 T C EIF3H Missense_Mutation p.K48E 0.12 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HI-01 8 121259927 121259927 C A COL14A1 Missense_Mutation p.P852Q 0.27 deleterious(0.05) probably_damaging(1) TCGA-NC-A5HI-01 8 124164288 124164288 G C TBC1D31 3'UTR 0.58 TCGA-NC-A5HI-01 8 125072475 125072475 C A FER1L6 Missense_Mutation p.Q977K 0.15 tolerated(0.3) benign(0.028) TCGA-NC-A5HI-01 8 131916088 131916088 C T ADCY8 Missense_Mutation p.S614N 0.31 tolerated(0.11) possibly_damaging(0.628) TCGA-NC-A5HI-01 8 139263117 139263117 G T FAM135B Missense_Mutation p.A170D 0.35 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HI-01 8 144641948 144641948 C T GSDMD Silent p.D73D 0.35 TCGA-NC-A5HI-01 8 35588548 35588548 C T UNC5D Missense_Mutation p.P567L 0.33 deleterious(0) probably_damaging(0.981) TCGA-NC-A5HI-01 8 37823940 37823940 G A ADRB3 Silent p.D16D 0.28 TCGA-NC-A5HI-01 8 39494846 39494846 G C ADAM18 Missense_Mutation p.V218L 0.09 deleterious(0.01) probably_damaging(0.929) TCGA-NC-A5HI-01 8 41561559 41561559 C A ANK1 Silent p.S798S 0.34 TCGA-NC-A5HI-01 8 52321501 52321501 C A PXDNL Missense_Mutation p.D895Y 0.18 deleterious(0) probably_damaging(1) TCGA-NC-A5HI-01 8 69445401 69445401 A G C8orf34 Intron 0.25 TCGA-NC-A5HI-01 8 87242190 87242190 C A SLC7A13 Missense_Mutation p.G106V 0.25 tolerated(0.34) possibly_damaging(0.516) TCGA-NC-A5HI-01 8 87242191 87242191 C A SLC7A13 Missense_Mutation p.G106W 0.26 deleterious(0.03) probably_damaging(0.991) TCGA-NC-A5HI-01 8 89180041 89180041 G T MMP16 Missense_Mutation p.A189E 0.16 deleterious(0) probably_damaging(1) TCGA-NC-A5HI-01 8 93029516 93029517 - T RUNX1T1 Frame_Shift_Ins p.T66Nfs*24 0.18 TCGA-NC-A5HI-01 8 95392624 95392624 C T RAD54B Missense_Mutation p.V666I 0.19 deleterious(0.02) possibly_damaging(0.589) TCGA-NC-A5HI-01 8 97263319 97263319 C G MTERFD1 Silent p.V164V 0.27 TCGA-NC-A5HI-01 8 99101656 99101656 G A C8orf47 Silent p.G137G 0.29 TCGA-NC-A5HI-01 9 104307095 104307095 C T RNF20 Silent p.L225L 0.44 TCGA-NC-A5HI-01 9 135073416 135073416 A G NTNG2 Missense_Mutation p.R93G 0.33 tolerated(0.1) benign(0.003) TCGA-NC-A5HI-01 9 32635536 32635536 G T TAF1L Silent p.T14T 0.26 TCGA-NC-A5HI-01 9 34646726 34646726 C G GALT Missense_Mutation p.Q9E 0.31 tolerated_low_confidence(1) benign(0) TCGA-NC-A5HI-01 9 5089755 5089755 C T JAK2 Nonsense_Mutation p.Q885* 0.40 TCGA-NC-A5HI-01 9 90301618 90301618 A T DAPK1 Missense_Mutation p.T793S 0.32 deleterious(0.02) possibly_damaging(0.823) TCGA-NC-A5HI-01 9 95400319 95400319 C T IPPK Missense_Mutation p.E294K 0.24 deleterious(0.02) possibly_damaging(0.907) TCGA-NC-A5HI-01 X 101139558 101139558 C G ZMAT1 Missense_Mutation p.A281P 0.48 tolerated(1) benign(0) TCGA-NC-A5HI-01 X 106960170 106960170 G T TSC22D3 Intron 0.50 TCGA-NC-A5HI-01 X 119504983 119504983 C A ATP1B4 Silent p.A160A 0.34 TCGA-NC-A5HI-01 X 130408731 130408731 C A IGSF1 Missense_Mutation p.G1203V 0.42 deleterious(0.01) probably_damaging(0.935) TCGA-NC-A5HI-01 X 2408092 2408092 G A ZBED1 Silent p.P223P 0.39 TCGA-NC-A5HI-01 X 32509421 32509421 T C DMD Silent p.A865A 0.20 TCGA-NC-A5HI-01 X 34962392 34962392 C T FAM47B Silent p.L482L 0.36 TCGA-NC-A5HI-01 X 37660506 37660506 C A CYBB Intron 0.38 TCGA-NC-A5HI-01 X 64138962 64138962 C A ZC4H2 Missense_Mutation p.R174L 0.36 tolerated(0.24) possibly_damaging(0.751) TCGA-NC-A5HI-01 X 69262936 69262936 G A AWAT2 Silent p.R210R 0.42 TCGA-NC-A5HI-01 X 73069172 73069172 T G XIST RNA 0.35 TCGA-NC-A5HI-01 X 78216242 78216242 C A P2RY10 Missense_Mutation p.N75K 0.34 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HI-01 X 86069789 86069789 G C DACH2 Missense_Mutation p.A546P 0.33 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HI-01 X 91132739 91132739 G A PCDH11X Silent p.K500K 0.32 TCGA-NC-A5HJ-01 10 103190141 103190141 C G BTRC Missense_Mutation p.L30V 0.14 tolerated_low_confidence(0.24) benign(0.011) TCGA-NC-A5HJ-01 10 121214584 121214584 G T GRK5 3'UTR 0.17 TCGA-NC-A5HJ-01 10 125447469 125447469 G T GPR26 Silent p.V269V 0.26 TCGA-NC-A5HJ-01 10 26849691 26849691 G T APBB1IP Silent p.R429R 0.11 TCGA-NC-A5HJ-01 10 28225663 28225663 A T ARMC4 Missense_Mutation p.N748K 0.12 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HJ-01 10 43619119 43619119 A T RET Silent p.V934V 0.06 TCGA-NC-A5HJ-01 10 43693490 43693490 G T RASGEF1A Missense_Mutation p.H396N 0.16 deleterious(0.02) benign(0.03) TCGA-NC-A5HJ-01 10 50285266 50285266 C A VSTM4 Missense_Mutation p.R211I 0.08 deleterious(0) possibly_damaging(0.806) TCGA-NC-A5HJ-01 10 59986869 59986869 A C IPMK Missense_Mutation p.L103R 0.09 deleterious(0) probably_damaging(0.95) TCGA-NC-A5HJ-01 10 7608166 7608166 C A ITIH5 Missense_Mutation p.G785V 0.15 tolerated(0.18) benign(0.396) TCGA-NC-A5HJ-01 10 7772080 7772080 C T ITIH2 Missense_Mutation p.T482M 0.08 deleterious(0) probably_damaging(0.989) TCGA-NC-A5HJ-01 10 84744862 84744862 C T NRG3 Missense_Mutation p.S531F 0.04 deleterious(0.01) probably_damaging(0.943) TCGA-NC-A5HJ-01 10 87482860 87482860 C T GRID1 Missense_Mutation p.V633M 0.11 tolerated(0.68) probably_damaging(0.921) TCGA-NC-A5HJ-01 10 88769363 88769363 G T RP11-96C23.10 3'Flank 0.14 TCGA-NC-A5HJ-01 11 1027432 1027432 G A MUC6 Silent p.T689T 0.14 TCGA-NC-A5HJ-01 11 107219698 107219698 T A CWF19L2 Missense_Mutation p.T723S 0.09 deleterious(0.01) possibly_damaging(0.854) TCGA-NC-A5HJ-01 11 118375134 118375134 G T KMT2A Missense_Mutation p.D2843Y 0.08 probably_damaging(0.999) TCGA-NC-A5HJ-01 11 123810892 123810892 C A OR4D5 Missense_Mutation p.T190K 0.12 deleterious(0) possibly_damaging(0.451) TCGA-NC-A5HJ-01 11 123813987 123813987 G A OR6T1 Missense_Mutation p.L187F 0.07 deleterious(0) possibly_damaging(0.873) TCGA-NC-A5HJ-01 11 12499399 12499399 A C PARVA Missense_Mutation p.L141F 0.12 deleterious(0) probably_damaging(1) TCGA-NC-A5HJ-01 11 125465810 125465810 G A STT3A 5'UTR 0.13 TCGA-NC-A5HJ-01 11 126133694 126133694 C G SRPR 3'UTR 0.12 TCGA-NC-A5HJ-01 11 130332567 130332567 G A ADAMTS15 Missense_Mutation p.M478I 0.08 tolerated(0.36) benign(0) TCGA-NC-A5HJ-01 11 20119229 20119229 C G NAV2 Missense_Mutation p.P2099R 0.14 deleterious(0) probably_damaging(1) TCGA-NC-A5HJ-01 11 20178126 20178126 T C DBX1 Silent p.T261T 0.07 TCGA-NC-A5HJ-01 11 281780 281780 G A NLRP6 Silent p.A682A 0.06 TCGA-NC-A5HJ-01 11 30032986 30032986 G T KCNA4 Missense_Mutation p.P414T 0.11 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HJ-01 11 31086087 31086087 C A DCDC1 Missense_Mutation p.E840D 0.07 tolerated(0.6) benign(0.146) TCGA-NC-A5HJ-01 11 34533129 34533129 C A ELF5 5'UTR 0.10 TCGA-NC-A5HJ-01 11 4608636 4608636 C T OR52I2 Silent p.F198F 0.08 TCGA-NC-A5HJ-01 11 4674107 4674107 G T OR51E1 Silent p.V117V 0.08 TCGA-NC-A5HJ-01 11 4968073 4968073 G T OR51A4 Silent p.I86I 0.09 TCGA-NC-A5HJ-01 11 55606398 55606398 G A OR5D16 Silent p.L57L 0.12 TCGA-NC-A5HJ-01 11 55607033 55607033 C A OR5D16 Missense_Mutation p.S269Y 0.10 deleterious(0) probably_damaging(0.994) TCGA-NC-A5HJ-01 11 55873264 55873264 C G OR8H2 Missense_Mutation p.T249S 0.07 tolerated(0.26) probably_damaging(0.926) TCGA-NC-A5HJ-01 11 60105328 60105328 G T MS4A6E Missense_Mutation p.D88Y 0.12 deleterious(0.01) probably_damaging(0.985) TCGA-NC-A5HJ-01 11 6048825 6048825 G T OR56A1 Missense_Mutation p.P37H 0.10 deleterious(0) possibly_damaging(0.62) TCGA-NC-A5HJ-01 11 61580747 61580747 G T FADS1 Missense_Mutation p.P152T 0.12 deleterious(0.01) possibly_damaging(0.897) TCGA-NC-A5HJ-01 11 61580749 61580749 G A FADS1 Missense_Mutation p.S151F 0.12 deleterious(0) possibly_damaging(0.789) TCGA-NC-A5HJ-01 11 61580808 61580808 G C FADS1 Missense_Mutation p.F131L 0.09 deleterious(0.04) probably_damaging(0.999) TCGA-NC-A5HJ-01 11 64056697 64056697 G A GPR137 Missense_Mutation p.G430S 0.12 tolerated_low_confidence(0.49) benign(0.005) TCGA-NC-A5HJ-01 11 64876853 64876853 G - VPS51 Frame_Shift_Del p.G517Vfs*42 0.10 TCGA-NC-A5HJ-01 11 65635774 65635774 G C EFEMP2 Silent p.V322V 0.11 TCGA-NC-A5HJ-01 11 66329088 66329088 C A CTSF 3'Flank 0.18 TCGA-NC-A5HJ-01 11 6816430 6816430 G T OR6A2 Silent p.G170G 0.13 TCGA-NC-A5HJ-01 11 89155085 89155085 G C NOX4 Missense_Mutation p.T205R 0.11 deleterious(0.03) benign(0.196) TCGA-NC-A5HJ-01 12 10342569 10342569 C A TMEM52B Missense_Mutation p.L108M 0.26 tolerated(0.16) possibly_damaging(0.812) TCGA-NC-A5HJ-01 12 104030991 104030991 G C STAB2 Missense_Mutation p.R229P 0.10 deleterious(0.04) benign(0.053) TCGA-NC-A5HJ-01 12 104083707 104083707 C G STAB2 Missense_Mutation p.D1043E 0.08 deleterious(0.04) possibly_damaging(0.597) TCGA-NC-A5HJ-01 12 104118852 104118852 T C STAB2 Missense_Mutation p.C1595R 0.09 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HJ-01 12 109719462 109719462 G T FOXN4 Silent p.P348P 0.31 TCGA-NC-A5HJ-01 12 111885299 111885299 C A SH2B3 Missense_Mutation p.T396K 0.05 deleterious(0) benign(0.397) TCGA-NC-A5HJ-01 12 113553020 113553021 - A RASAL1 Frame_Shift_Ins p.M351Ifs*22 0.15 TCGA-NC-A5HJ-01 12 114793844 114793844 T A TBX5 Missense_Mutation p.E350D 0.08 tolerated(0.32) benign(0.004) TCGA-NC-A5HJ-01 12 11506748 11506748 G T PRB1 Missense_Mutation p.P97T 0.14 tolerated_low_confidence(0.08) unknown(0) TCGA-NC-A5HJ-01 12 117187970 117187970 G T RNFT2 Silent p.G136G 0.24 TCGA-NC-A5HJ-01 12 117923443 117923443 A G KSR2 Missense_Mutation p.L758S 0.13 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HJ-01 12 122658456 122658456 G A IL31 Missense_Mutation p.P34S 0.27 tolerated(0.08) benign(0.069) TCGA-NC-A5HJ-01 12 133418094 133418094 C A CHFR 3'UTR 0.09 TCGA-NC-A5HJ-01 12 19514640 19514640 G T PLEKHA5 Missense_Mutation p.S1203I 0.10 deleterious(0) possibly_damaging(0.771) TCGA-NC-A5HJ-01 12 20799825 20799825 C A PDE3A Missense_Mutation p.H836N 0.07 deleterious(0) probably_damaging(1) TCGA-NC-A5HJ-01 12 25260807 25260807 A T LRMP Missense_Mutation p.N438I 0.09 deleterious(0) possibly_damaging(0.869) TCGA-NC-A5HJ-01 12 27863818 27863818 G A MRPS35 Silent p.S14S 0.12 TCGA-NC-A5HJ-01 12 27950981 27950981 G A KLHL42 Missense_Mutation p.R467Q 0.20 tolerated(0.13) possibly_damaging(0.794) TCGA-NC-A5HJ-01 12 48383547 48383547 A G COL2A1 Silent p.P355P 0.07 TCGA-NC-A5HJ-01 12 51723548 51723548 C A CELA1 Missense_Mutation p.V227L 0.06 tolerated(0.39) possibly_damaging(0.774) TCGA-NC-A5HJ-01 12 53040603 53040603 G A KRT2 Nonsense_Mutation p.Q464* 0.07 TCGA-NC-A5HJ-01 12 54106964 54106964 C A CALCOCO1 Silent p.L606L 0.07 TCGA-NC-A5HJ-01 12 55356302 55356302 G C TESPA1 Silent p.T460T 0.18 TCGA-NC-A5HJ-01 12 55524348 55524348 T G OR9K2 Missense_Mutation p.C266G 0.09 deleterious(0) probably_damaging(1) TCGA-NC-A5HJ-01 12 56031142 56031142 C A OR10P1 Missense_Mutation p.T156K 0.21 deleterious(0) probably_damaging(0.958) TCGA-NC-A5HJ-01 12 57619203 57619203 G C NXPH4 Silent p.A200A 0.11 TCGA-NC-A5HJ-01 12 64437273 64437273 G T SRGAP1 Missense_Mutation p.R240L 0.16 deleterious(0) probably_damaging(0.988) TCGA-NC-A5HJ-01 12 64437274 64437274 G T SRGAP1 Silent p.R240R 0.15 TCGA-NC-A5HJ-01 12 6833859 6833859 G T COPS7A Nonsense_Mutation p.E13* 0.14 TCGA-NC-A5HJ-01 12 6933696 6933696 G T GPR162 Missense_Mutation p.R211L 0.08 tolerated(0.28) benign(0.182) TCGA-NC-A5HJ-01 12 6973028 6973028 G A USP5 Silent p.L663L 0.16 TCGA-NC-A5HJ-01 12 7046411 7046411 T G ATN1 Missense_Mutation p.S661A 0.28 benign(0.252) TCGA-NC-A5HJ-01 12 75905320 75905320 T A KRR1 Missense_Mutation p.N20Y 0.06 tolerated(0.27) benign(0.044) TCGA-NC-A5HJ-01 12 78225213 78225213 G - NAV3 5'UTR 0.11 TCGA-NC-A5HJ-01 12 78400883 78400883 C T NAV3 Missense_Mutation p.P522L 0.10 deleterious(0) benign(0.139) TCGA-NC-A5HJ-01 12 81101946 81101946 C A MYF6 Silent p.R150R 0.11 TCGA-NC-A5HJ-01 12 8757849 8757849 T G AICDA Missense_Mutation p.H130P 0.21 tolerated(0.05) benign(0.295) TCGA-NC-A5HJ-01 13 101844342 101844342 G T NALCN Missense_Mutation p.L564I 0.14 deleterious(0.01) possibly_damaging(0.74) TCGA-NC-A5HJ-01 13 101844348 101844348 G T NALCN Missense_Mutation p.Q562K 0.14 tolerated(0.08) benign(0.055) TCGA-NC-A5HJ-01 13 108863270 108863270 G C LIG4 Missense_Mutation p.T116S 0.19 tolerated(0.45) benign(0.013) TCGA-NC-A5HJ-01 13 28626732 28626732 G T FLT3 Missense_Mutation p.S188R 0.10 deleterious(0.04) possibly_damaging(0.857) TCGA-NC-A5HJ-01 13 37269161 37269161 C A SERTM1 5'UTR 0.19 TCGA-NC-A5HJ-01 13 42142352 42142352 G A VWA8 Missense_Mutation p.T1900I 0.14 deleterious(0) probably_damaging(0.987) TCGA-NC-A5HJ-01 13 48654028 48654028 C G MED4 Missense_Mutation p.V198L 0.22 tolerated(0.37) benign(0.05) TCGA-NC-A5HJ-01 14 105411896 105411896 C A AHNAK2 Missense_Mutation p.D3298Y 0.06 possibly_damaging(0.887) TCGA-NC-A5HJ-01 14 106174734 106174734 T C IGHA1 Missense_Mutation p.Y90C 0.08 tolerated(0.18) probably_damaging(0.913) TCGA-NC-A5HJ-01 14 20388821 20388821 G A OR4K5 Missense_Mutation p.S19N 0.09 tolerated(0.64) benign(0.003) TCGA-NC-A5HJ-01 14 21359965 21359965 C A RNASE3 Silent p.I40I 0.09 TCGA-NC-A5HJ-01 14 23897037 23897037 T C MYH7 Missense_Mutation p.K549E 0.11 deleterious(0.02) possibly_damaging(0.874) TCGA-NC-A5HJ-01 14 42356708 42356708 C G LRFN5 Missense_Mutation p.H294D 0.14 tolerated(0.19) benign(0.158) TCGA-NC-A5HJ-01 14 52508957 52508957 C A NID2 Missense_Mutation p.R564I 0.14 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HJ-01 14 57749906 57749906 G T AP5M1 Missense_Mutation p.Q417H 0.11 tolerated(0.37) benign(0.006) TCGA-NC-A5HJ-01 14 64600862 64600862 G T SYNE2 Missense_Mutation p.V4864L 0.21 probably_damaging(0.997) TCGA-NC-A5HJ-01 14 65239471 65239471 C - SPTB Frame_Shift_Del p.A1794Pfs*106 0.14 TCGA-NC-A5HJ-01 14 94849459 94849459 T A SERPINA1 Missense_Mutation p.H39L 0.14 tolerated(0.28) benign(0) TCGA-NC-A5HJ-01 15 20169955 20169955 C G IGHV1OR15-9 Missense_Mutation p.R106T 0.17 tolerated(0.69) benign(0.173) TCGA-NC-A5HJ-01 15 22472975 22472975 G A IGHV4OR15-8 Missense_Mutation p.S99F 0.05 tolerated(0.15) benign(0.35) TCGA-NC-A5HJ-01 15 23437931 23437931 G T GOLGA8EP RNA 0.14 TCGA-NC-A5HJ-01 15 25307527 25307527 C A SNORD116-5 RNA 0.08 TCGA-NC-A5HJ-01 15 25326357 25326357 G A SNORD116-12 3'Flank 0.10 TCGA-NC-A5HJ-01 15 25326438 25326438 C A SNORD116-15 RNA 0.14 TCGA-NC-A5HJ-01 15 25953448 25953448 C A ATP10A Splice_Site p.X782_splice 0.07 TCGA-NC-A5HJ-01 15 29561264 29561264 A G NDNL2 Missense_Mutation p.F216L 0.14 deleterious(0.03) probably_damaging(0.923) TCGA-NC-A5HJ-01 15 33988492 33988492 G T RYR3 Silent p.L1978L 0.13 TCGA-NC-A5HJ-01 15 34093022 34093022 G A RYR3 Missense_Mutation p.M3294I 0.14 probably_damaging(0.909) TCGA-NC-A5HJ-01 15 34527515 34527515 C A SLC12A6 Silent p.P1076P 0.13 TCGA-NC-A5HJ-01 15 45397846 45397846 C - DUOX2 Frame_Shift_Del p.A777Lfs*26 0.13 TCGA-NC-A5HJ-01 15 54919176 54919176 T G UNC13C Silent p.P2170P 0.09 TCGA-NC-A5HJ-01 15 59752378 59752378 A C FAM81A Silent p.I89I 0.09 TCGA-NC-A5HJ-01 15 65693274 65693274 C A IGDCC4 Silent p.A237A 0.05 TCGA-NC-A5HJ-01 15 73575326 73575326 G T NEO1 Missense_Mutation p.S1095I 0.03 deleterious(0.03) possibly_damaging(0.459) TCGA-NC-A5HJ-01 15 74043351 74043352 - A C15orf59 Frame_Shift_Ins p.R41Sfs*19 0.08 TCGA-NC-A5HJ-01 15 75664537 75664537 A C SIN3A Missense_Mutation p.V1202G 0.23 deleterious(0) probably_damaging(0.973) TCGA-NC-A5HJ-01 15 78463760 78463760 A G IDH3A 3'UTR 0.33 TCGA-NC-A5HJ-01 15 79750286 79750286 G T KIAA1024 Silent p.L599L 0.36 TCGA-NC-A5HJ-01 15 83451590 83451590 G C FSD2 Missense_Mutation p.T308R 0.04 deleterious(0.01) benign(0.178) TCGA-NC-A5HJ-01 15 86087166 86087166 G T AKAP13 Missense_Mutation p.K214N 0.16 deleterious(0.01) possibly_damaging(0.643) TCGA-NC-A5HJ-01 15 89008956 89008956 C A MRPL46 Missense_Mutation p.D93Y 0.08 deleterious(0) possibly_damaging(0.617) TCGA-NC-A5HJ-01 15 89449103 89449103 C A MFGE8 Silent p.A190A 0.08 TCGA-NC-A5HJ-01 15 92988088 92988088 G C ST8SIA2 Missense_Mutation p.E257D 0.19 benign(0.013) TCGA-NC-A5HJ-01 16 1825597 1825597 A G EME2 Missense_Mutation p.N231D 0.10 tolerated(0.22) benign(0.006) TCGA-NC-A5HJ-01 16 2000915 2000915 T A RPL3L Missense_Mutation p.K144M 0.11 deleterious(0.01) possibly_damaging(0.753) TCGA-NC-A5HJ-01 16 22155620 22155620 T C VWA3A Missense_Mutation p.M882T 0.13 deleterious(0.01) benign(0.011) TCGA-NC-A5HJ-01 16 23637604 23637604 G T PALB2 Missense_Mutation p.L901M 0.12 deleterious(0.04) benign(0.195) TCGA-NC-A5HJ-01 16 28844485 28844485 T A ATXN2L Missense_Mutation p.S589T 0.10 tolerated(0.26) benign(0.006) TCGA-NC-A5HJ-01 16 311384 311384 G T ITFG3 Silent p.G193G 0.17 TCGA-NC-A5HJ-01 16 31424225 31424225 G T ITGAD Missense_Mutation p.D592Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HJ-01 16 3533516 3533516 A G NAA60 Missense_Mutation p.Y164C 0.14 deleterious(0) possibly_damaging(0.786) TCGA-NC-A5HJ-01 16 48119530 48119530 C A ABCC12 Missense_Mutation p.A1268S 0.08 deleterious(0.03) probably_damaging(0.975) TCGA-NC-A5HJ-01 16 55801410 55801410 A C CES1P1 RNA 0.19 TCGA-NC-A5HJ-01 16 66426257 66426257 G T CDH5 Missense_Mutation p.M396I 0.14 tolerated(0.48) benign(0) TCGA-NC-A5HJ-01 16 71950482 71950482 T C IST1 Missense_Mutation p.M82T 0.11 deleterious(0) probably_damaging(0.994) TCGA-NC-A5HJ-01 16 88643821 88643821 G T ZC3H18 Missense_Mutation p.C97F 0.17 tolerated_low_confidence(0.67) unknown(0) TCGA-NC-A5HJ-01 17 10212569 10212569 C T MYH13 Silent p.V1717V 0.12 TCGA-NC-A5HJ-01 17 10304055 10304055 C T MYH8 Silent p.R1129R 0.21 TCGA-NC-A5HJ-01 17 10304937 10304937 C A MYH8 Nonsense_Mutation p.E952* 0.05 TCGA-NC-A5HJ-01 17 1584289 1584289 C T PRPF8 Missense_Mutation p.R309H 0.07 deleterious(0) probably_damaging(0.973) TCGA-NC-A5HJ-01 17 26604370 26604370 G A AC061975.8 5'Flank 0.25 TCGA-NC-A5HJ-01 17 27895796 27895796 C T TP53I13 Missense_Mutation p.S7L 0.11 tolerated_low_confidence(0.42) unknown(0) TCGA-NC-A5HJ-01 17 29151660 29151660 C A CRLF3 Missense_Mutation p.A4S 0.11 tolerated_low_confidence(0.44) benign(0.008) TCGA-NC-A5HJ-01 17 3101012 3101012 C G OR1A2 Missense_Mutation p.S67C 0.07 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HJ-01 17 3101033 3101033 C G OR1A2 Nonsense_Mutation p.S74* 0.10 TCGA-NC-A5HJ-01 17 34195756 34195756 C A C17orf66 5'UTR 0.24 TCGA-NC-A5HJ-01 17 38710834 38710834 G A CCR7 3'UTR 0.12 TCGA-NC-A5HJ-01 17 38925279 38925279 C A KRT26 Missense_Mutation p.D347Y 0.24 deleterious(0.04) probably_damaging(0.961) TCGA-NC-A5HJ-01 17 38925280 38925280 C A KRT26 Missense_Mutation p.Q346H 0.24 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HJ-01 17 39406275 39406275 C T KRTAP9-4 Silent p.C101C 0.13 TCGA-NC-A5HJ-01 17 40998084 40998084 G A AOC2 Missense_Mutation p.G481R 0.06 tolerated(0.05) possibly_damaging(0.56) TCGA-NC-A5HJ-01 17 46608171 46608171 G T HOXB1 Silent p.P32P 0.24 TCGA-NC-A5HJ-01 17 47388713 47388713 T C ZNF652 Missense_Mutation p.M424V 0.18 deleterious(0.01) benign(0.23) TCGA-NC-A5HJ-01 17 48262992 48262992 C G COL1A1 Missense_Mutation p.W1422C 0.08 unknown(0) TCGA-NC-A5HJ-01 17 4908219 4908219 T A KIF1C Silent p.I363I 0.09 TCGA-NC-A5HJ-01 17 51901841 51901841 C A KIF2B Missense_Mutation p.L483M 0.08 deleterious(0) possibly_damaging(0.879) TCGA-NC-A5HJ-01 17 51901961 51901961 G C KIF2B Missense_Mutation p.G523R 0.16 deleterious(0) probably_damaging(1) TCGA-NC-A5HJ-01 17 55123039 55123039 C G RNF126P1 RNA 0.30 TCGA-NC-A5HJ-01 17 56620795 56620795 A T C17orf47 Silent p.G251G 0.19 TCGA-NC-A5HJ-01 17 58571866 58571866 C A APPBP2 Missense_Mutation p.A114S 0.17 tolerated(0.78) benign(0) TCGA-NC-A5HJ-01 17 72443294 72443294 G T GPRC5C 3'UTR 0.33 TCGA-NC-A5HJ-01 17 74396300 74396300 T C UBE2O Silent p.V361V 0.14 TCGA-NC-A5HJ-01 17 7579470 7579471 CG A TP53 Frame_Shift_Del p.V73Wfs*50 0.18 TCGA-NC-A5HJ-01 17 76045261 76045261 G C TNRC6C Missense_Mutation p.G40R 0.05 deleterious(0) probably_damaging(0.935) TCGA-NC-A5HJ-01 17 76045262 76045262 G T TNRC6C Missense_Mutation p.G40V 0.05 deleterious(0) possibly_damaging(0.831) TCGA-NC-A5HJ-01 17 7691236 7691236 G T DNAH2 Missense_Mutation p.R2221L 0.14 possibly_damaging(0.854) TCGA-NC-A5HJ-01 17 8222389 8222389 G T ARHGEF15 Missense_Mutation p.D700Y 0.17 deleterious(0) probably_damaging(0.92) TCGA-NC-A5HJ-01 17 9808312 9808312 G C RCVRN Silent p.P62P 0.18 TCGA-NC-A5HJ-01 18 28919866 28919866 C G DSG1 Missense_Mutation p.T522S 0.13 tolerated(0.71) benign(0.001) TCGA-NC-A5HJ-01 18 29493384 29493384 T G TRAPPC8 Missense_Mutation p.Q240P 0.08 deleterious(0.03) probably_damaging(0.968) TCGA-NC-A5HJ-01 18 50985726 50985726 C A DCC Missense_Mutation p.P1173T 0.11 tolerated(0.11) benign(0.119) TCGA-NC-A5HJ-01 18 52262267 52262267 G T DYNAP Missense_Mutation p.G78V 0.11 tolerated(0.05) probably_damaging(0.988) TCGA-NC-A5HJ-01 18 55020012 55020012 C A ST8SIA3 5'UTR 0.30 TCGA-NC-A5HJ-01 18 58038696 58038696 A G MC4R Missense_Mutation p.I296T 0.07 deleterious(0.03) benign(0.082) TCGA-NC-A5HJ-01 18 6238009 6238009 T C L3MBTL4 Silent p.P246P 0.17 TCGA-NC-A5HJ-01 18 6964800 6964800 C G LAMA1 Missense_Mutation p.V2400L 0.14 tolerated(0.75) benign(0.006) TCGA-NC-A5HJ-01 18 6965380 6965380 C A LAMA1 Missense_Mutation p.D2368Y 0.15 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HJ-01 18 72345438 72345438 G T ZNF407 Silent p.L821L 0.06 TCGA-NC-A5HJ-01 18 73000022 73000022 G T TSHZ1 Missense_Mutation p.G842V 0.12 deleterious(0) probably_damaging(1) TCGA-NC-A5HJ-01 18 9887904 9887904 G A TXNDC2 Silent p.S476S 0.08 TCGA-NC-A5HJ-01 19 10127828 10127828 G A RDH8 Missense_Mutation p.V87M 0.15 deleterious(0) probably_damaging(0.994) TCGA-NC-A5HJ-01 19 12575439 12575439 T A ZNF709 Missense_Mutation p.S433C 0.21 deleterious(0) possibly_damaging(0.818) TCGA-NC-A5HJ-01 19 12875632 12875632 C T HOOK2 Missense_Mutation p.R608H 0.08 deleterious(0.02) benign(0.394) TCGA-NC-A5HJ-01 19 15082598 15082598 C T SLC1A6 Silent p.R98R 0.15 TCGA-NC-A5HJ-01 19 19105038 19105038 T C SUGP2 3'UTR 0.14 TCGA-NC-A5HJ-01 19 2733060 2733060 C A SLC39A3 Missense_Mutation p.A212S 0.13 tolerated(0.19) probably_damaging(0.936) TCGA-NC-A5HJ-01 19 35512673 35512673 G A GRAMD1A Missense_Mutation p.R553Q 0.14 deleterious(0.03) probably_damaging(0.982) TCGA-NC-A5HJ-01 19 37130659 37130659 C A ZNF461 Missense_Mutation p.K196N 0.22 deleterious(0.03) benign(0.001) TCGA-NC-A5HJ-01 19 38190320 38190320 C A ZNF607 Nonsense_Mutation p.G238* 0.11 TCGA-NC-A5HJ-01 19 38903387 38903387 C A RASGRP4 Missense_Mutation p.L535F 0.41 deleterious(0.01) possibly_damaging(0.883) TCGA-NC-A5HJ-01 19 40200008 40200008 G T LGALS14 3'Flank 0.30 TCGA-NC-A5HJ-01 19 40200009 40200009 G T LGALS14 3'Flank 0.30 TCGA-NC-A5HJ-01 19 40368792 40368792 C A FCGBP Missense_Mutation p.V4186L 0.04 benign(0.299) TCGA-NC-A5HJ-01 19 45899652 45899652 T A PPP1R13L Missense_Mutation p.E252V 0.11 deleterious(0) probably_damaging(0.959) TCGA-NC-A5HJ-01 19 47912737 47912737 C A MEIS3 Missense_Mutation p.S222I 0.08 deleterious(0.01) benign(0.437) TCGA-NC-A5HJ-01 19 51981811 51981811 G T CEACAM18 Missense_Mutation p.C33F 0.21 deleterious_low_confidence(0.04) benign(0.125) TCGA-NC-A5HJ-01 19 52327792 52327792 T C FPR3 Missense_Mutation p.M264T 0.08 tolerated(0.61) benign(0.001) TCGA-NC-A5HJ-01 19 54941763 54941763 G A TTYH1 Missense_Mutation p.V307I 0.06 tolerated(0.13) benign(0.03) TCGA-NC-A5HJ-01 19 608051 608051 G A HCN2 Missense_Mutation p.E436K 0.17 tolerated(0.64) benign(0.039) TCGA-NC-A5HJ-01 19 6719254 6719254 C A C3 Missense_Mutation p.A79S 0.05 tolerated(0.52) benign(0.027) TCGA-NC-A5HJ-01 19 691988 691988 C A PRSS57 Missense_Mutation p.G84V 0.30 tolerated(0.62) benign(0.017) TCGA-NC-A5HJ-01 19 8982329 8982329 C T MUC16 Silent p.R13982R 0.09 TCGA-NC-A5HJ-01 19 8982330 8982330 C A MUC16 Splice_Site p.X13982_splice 0.10 TCGA-NC-A5HJ-01 19 9067058 9067058 T C MUC16 Missense_Mutation p.I6796M 0.20 unknown(0) TCGA-NC-A5HJ-01 1 109271493 109271493 G C FNDC7 Missense_Mutation p.V537L 0.08 tolerated(0.25) benign(0.082) TCGA-NC-A5HJ-01 1 111060276 111060276 G T KCNA10 Silent p.L378L 0.08 TCGA-NC-A5HJ-01 1 112318834 112318834 G T KCND3 Silent p.T611T 0.18 TCGA-NC-A5HJ-01 1 112525372 112525372 C A KCND3 5'UTR 0.27 TCGA-NC-A5HJ-01 1 120056663 120056663 A T HSD3B1 Missense_Mutation p.N173Y 0.21 deleterious(0.05) benign(0.011) TCGA-NC-A5HJ-01 1 12954946 12954946 A T PRAMEF10 Missense_Mutation p.W113R 0.12 deleterious(0) probably_damaging(0.925) TCGA-NC-A5HJ-01 1 14107971 14107971 G T PRDM2 Silent p.G1227G 0.04 TCGA-NC-A5HJ-01 1 151492684 151492684 G T CGN Missense_Mutation p.A306S 0.09 tolerated(0.42) benign(0.059) TCGA-NC-A5HJ-01 1 152328697 152328697 C A FLG2 Missense_Mutation p.G522V 0.06 unknown(0) TCGA-NC-A5HJ-01 1 152636797 152636797 C A LCE2D Nonsense_Mutation p.C72* 0.05 TCGA-NC-A5HJ-01 1 152636836 152636836 G T LCE2D Silent p.R85R 0.14 TCGA-NC-A5HJ-01 1 152648470 152648470 G T LCE2C Splice_Site 0.05 TCGA-NC-A5HJ-01 1 153279718 153279718 C A PGLYRP3 Missense_Mutation p.K27N 0.20 tolerated(0.18) benign(0.018) TCGA-NC-A5HJ-01 1 155630599 155630599 C G YY1AP1 Missense_Mutation p.E506Q 0.06 tolerated_low_confidence(0.08) benign(0.177) TCGA-NC-A5HJ-01 1 156811524 156811524 G T INSRR Missense_Mutation p.L1154M 0.06 deleterious(0) possibly_damaging(0.856) TCGA-NC-A5HJ-01 1 156845335 156845335 G T NTRK1 Missense_Mutation p.D460Y 0.13 deleterious(0) benign(0.013) TCGA-NC-A5HJ-01 1 156851400 156851400 A T NTRK1 Missense_Mutation p.Q786L 0.19 deleterious(0.01) benign(0.006) TCGA-NC-A5HJ-01 1 15809837 15809837 C A CELA2B Silent p.A145A 0.11 TCGA-NC-A5HJ-01 1 158325226 158325226 G T CD1E Silent p.R164R 0.13 TCGA-NC-A5HJ-01 1 158669926 158669926 G C OR6K2 Missense_Mutation p.L173V 0.09 deleterious(0.02) benign(0.145) TCGA-NC-A5HJ-01 1 160771672 160771672 C A LY9 Intron 0.12 TCGA-NC-A5HJ-01 1 161130648 161130648 C A USP21 Missense_Mutation p.T73N 0.09 tolerated_low_confidence(0.07) benign(0) TCGA-NC-A5HJ-01 1 16459702 16459702 T C EPHA2 Missense_Mutation p.I676V 0.10 deleterious(0.05) probably_damaging(0.998) TCGA-NC-A5HJ-01 1 165182968 165182968 C A LMX1A Missense_Mutation p.K193N 0.07 deleterious(0) benign(0.171) TCGA-NC-A5HJ-01 1 167095183 167095183 G T DUSP27 Missense_Mutation p.R272L 0.19 deleterious(0.01) probably_damaging(1) TCGA-NC-A5HJ-01 1 169510642 169510642 A T F5 Missense_Mutation p.M1229K 0.05 tolerated(0.08) benign(0.076) TCGA-NC-A5HJ-01 1 169578876 169578876 G A SELP Missense_Mutation p.S400F 0.10 tolerated(0.05) benign(0.132) TCGA-NC-A5HJ-01 1 173616029 173616029 G T ANKRD45 Missense_Mutation p.A151D 0.05 tolerated(0.21) benign(0.005) TCGA-NC-A5HJ-01 1 175292593 175292593 C T TNR Nonsense_Mutation p.W1326* 0.09 TCGA-NC-A5HJ-01 1 179102447 179102447 C G ABL2 Missense_Mutation p.E74Q 0.07 deleterious(0.04) possibly_damaging(0.451) TCGA-NC-A5HJ-01 1 181702090 181702090 G C CACNA1E Silent p.G956G 0.08 TCGA-NC-A5HJ-01 1 183253151 183253151 C A NMNAT2 Missense_Mutation p.V185L 0.14 tolerated(0.4) benign(0.089) TCGA-NC-A5HJ-01 1 196712671 196712671 T A CFH Missense_Mutation p.Y1075N 0.09 deleterious(0) possibly_damaging(0.859) TCGA-NC-A5HJ-01 1 197446979 197446979 G T CRB1 Missense_Mutation p.M1397I 0.09 tolerated(0.07) benign(0.033) TCGA-NC-A5HJ-01 1 200957967 200957967 C A KIF21B Silent p.L1075L 0.11 TCGA-NC-A5HJ-01 1 201333454 201333454 C A TNNT2 Missense_Mutation p.R144L 0.17 deleterious(0.03) probably_damaging(0.996) TCGA-NC-A5HJ-01 1 204218361 204218361 T A PLEKHA6 Missense_Mutation p.K542M 0.04 deleterious(0) probably_damaging(0.984) TCGA-NC-A5HJ-01 1 205548966 205548966 G T MFSD4 Missense_Mutation p.K106N 0.08 tolerated(0.48) benign(0.094) TCGA-NC-A5HJ-01 1 21586777 21586777 T A ECE1 Missense_Mutation p.E201V 0.07 deleterious(0.05) benign(0.144) TCGA-NC-A5HJ-01 1 216496918 216496918 G C USH2A Missense_Mutation p.T483R 0.08 probably_damaging(0.981) TCGA-NC-A5HJ-01 1 220170370 220170370 T G EPRS Silent p.A832A 0.09 TCGA-NC-A5HJ-01 1 228492191 228492191 C A OBSCN Silent p.G4730G 0.16 TCGA-NC-A5HJ-01 1 229683326 229683326 G A ABCB10 Missense_Mutation p.L281F 0.14 deleterious(0.03) possibly_damaging(0.738) TCGA-NC-A5HJ-01 1 231406600 231406600 C T GNPAT Missense_Mutation p.S459F 0.19 deleterious(0.04) benign(0.003) TCGA-NC-A5HJ-01 1 231829888 231829888 G T DISC1 Missense_Mutation p.L128F 0.15 deleterious(0.01) probably_damaging(0.988) TCGA-NC-A5HJ-01 1 231829889 231829889 C T DISC1 Missense_Mutation p.P129S 0.15 tolerated(0.24) possibly_damaging(0.58) TCGA-NC-A5HJ-01 1 231902894 231902894 G T DISC1 Missense_Mutation p.G426V 0.12 tolerated(0.15) possibly_damaging(0.681) TCGA-NC-A5HJ-01 1 235955115 235955115 G A LYST Missense_Mutation p.S1476F 0.09 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HJ-01 1 237666734 237666734 C A RYR2 Missense_Mutation p.R848S 0.05 benign(0.134) TCGA-NC-A5HJ-01 1 238053475 238053475 G TT ZP4 Frame_Shift_Ins p.D59Efs*12 0.19 TCGA-NC-A5HJ-01 1 24122729 24122729 C A GALE Silent p.R300R 0.11 TCGA-NC-A5HJ-01 1 241731806 241731806 C G KMO Silent p.L272L 0.15 TCGA-NC-A5HJ-01 1 241798417 241798417 T A CHML Missense_Mutation p.T218S 0.10 tolerated(0.24) benign(0.056) TCGA-NC-A5HJ-01 1 248263339 248263339 T A OR2L13 Missense_Mutation p.L221Q 0.08 deleterious(0) probably_damaging(0.995) TCGA-NC-A5HJ-01 1 248457996 248457996 G C OR2T12 Silent p.V295V 0.05 TCGA-NC-A5HJ-01 1 248737531 248737531 A T OR2T34 Silent p.S176S 0.08 TCGA-NC-A5HJ-01 1 248756993 248756993 C A OR2T10 Missense_Mutation p.R26L 0.15 tolerated(1) benign(0) TCGA-NC-A5HJ-01 1 248813273 248813273 C A OR2T27 Missense_Mutation p.V305L 0.10 tolerated(1) benign(0.001) TCGA-NC-A5HJ-01 1 29642560 29642560 G T PTPRU Missense_Mutation p.C1147F 0.09 deleterious(0.03) possibly_damaging(0.824) TCGA-NC-A5HJ-01 1 32713219 32713219 G C FAM167B Missense_Mutation p.G66A 0.21 tolerated(0.76) benign(0.002) TCGA-NC-A5HJ-01 1 36752626 36752626 C G THRAP3 Silent p.P265P 0.08 TCGA-NC-A5HJ-01 1 37270826 37270826 C A GRIK3 Missense_Mutation p.R776L 0.13 deleterious(0) probably_damaging(0.979) TCGA-NC-A5HJ-01 1 3807432 3807432 C T C1orf174 Missense_Mutation p.E107K 0.11 tolerated(0.68) benign(0.024) TCGA-NC-A5HJ-01 1 38227317 38227317 C A EPHA10 Missense_Mutation p.V204L 0.14 tolerated(0.09) probably_damaging(0.99) TCGA-NC-A5HJ-01 1 38227359 38227359 G T EPHA10 Missense_Mutation p.L190M 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-NC-A5HJ-01 1 39853856 39853856 G T MACF1 Missense_Mutation p.M3052I 0.13 benign(0.237) TCGA-NC-A5HJ-01 1 43898089 43898089 G T SZT2 Missense_Mutation p.R1750S 0.06 tolerated(0.5) benign(0.006) TCGA-NC-A5HJ-01 1 47685530 47685530 G T TAL1 Silent p.S286S 0.10 TCGA-NC-A5HJ-01 1 70503891 70503891 G C LRRC7 Missense_Mutation p.R757P 0.06 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-NC-A5HJ-01 1 85405306 85405306 T C MCOLN2 Missense_Mutation p.Y347C 0.10 deleterious(0) benign(0.12) TCGA-NC-A5HJ-01 1 89729487 89729487 T A GBP5 Missense_Mutation p.N432Y 0.09 tolerated(0.24) benign(0.035) TCGA-NC-A5HJ-01 1 91182612 91182612 G T BARHL2 Silent p.A47A 0.08 TCGA-NC-A5HJ-01 1 94526184 94526184 C A ABCA4 Missense_Mutation p.G690V 0.11 deleterious(0) probably_damaging(1) TCGA-NC-A5HJ-01 20 19981329 19981329 A G RIN2 Missense_Mutation p.I862V 0.08 tolerated(0.23) benign(0.003) TCGA-NC-A5HJ-01 20 23425507 23425507 C A CSTL1 Missense_Mutation p.L144I 0.07 deleterious_low_confidence(0) possibly_damaging(0.636) TCGA-NC-A5HJ-01 20 25190505 25190505 G C ENTPD6 Missense_Mutation p.E133Q 0.07 deleterious(0.04) probably_damaging(0.963) TCGA-NC-A5HJ-01 20 29993963 29993963 G T DEFB121 5'UTR 0.21 TCGA-NC-A5HJ-01 20 37580939 37580939 G A FAM83D Missense_Mutation p.G542S 0.11 tolerated(0.7) benign(0.023) TCGA-NC-A5HJ-01 20 50768967 50768967 G A ZFP64 Silent p.P588P 0.12 TCGA-NC-A5HJ-01 20 55099937 55099937 C A FAM209A Missense_Mutation p.L25M 0.09 deleterious(0.02) possibly_damaging(0.466) TCGA-NC-A5HJ-01 20 57767944 57767944 G T ZNF831 Missense_Mutation p.G624W 0.08 deleterious(0) probably_damaging(1) TCGA-NC-A5HJ-01 20 60888215 60888215 T A LAMA5 Missense_Mutation p.T2962S 0.11 benign(0.01) TCGA-NC-A5HJ-01 20 8755203 8755203 C A PLCB1 Missense_Mutation p.P983H 0.18 deleterious(0.04) possibly_damaging(0.634) TCGA-NC-A5HJ-01 21 27253923 27253923 G A APP 3'UTR 0.07 TCGA-NC-A5HJ-01 21 34925003 34925003 A G SON Missense_Mutation p.T1156A 0.06 benign(0.217) TCGA-NC-A5HJ-01 21 43274764 43274764 G A PRDM15 Missense_Mutation p.P516L 0.07 deleterious_low_confidence(0.03) benign(0.124) TCGA-NC-A5HJ-01 21 45710999 45710999 G T AIRE Missense_Mutation p.V301L 0.07 deleterious(0.01) benign(0.44) TCGA-NC-A5HJ-01 21 46057529 46057529 C A KRTAP10-10 Silent p.G65G 0.10 TCGA-NC-A5HJ-01 22 17072854 17072854 C T CCT8L2 Missense_Mutation p.G196D 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-NC-A5HJ-01 22 21150467 21150467 G C PI4KA Missense_Mutation p.S748R 0.08 deleterious(0.01) possibly_damaging(0.904) TCGA-NC-A5HJ-01 22 24909323 24909323 C T UPB1 Missense_Mutation p.S164F 0.10 tolerated(0.09) possibly_damaging(0.512) TCGA-NC-A5HJ-01 22 30867947 30867947 G T SEC14L3 5'UTR 0.10 TCGA-NC-A5HJ-01 22 32188778 32188778 G T DEPDC5 Missense_Mutation p.G248W 0.11 deleterious(0) probably_damaging(0.967) TCGA-NC-A5HJ-01 22 46859997 46859997 C T CELSR1 Missense_Mutation p.A1264T 0.19 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HJ-01 2 108488310 108488310 C A RGPD4 Missense_Mutation p.H1284N 0.09 tolerated(0.13) benign(0) TCGA-NC-A5HJ-01 2 109368326 109368326 G C RANBP2 Splice_Site p.X544_splice 0.13 TCGA-NC-A5HJ-01 2 113819749 113819749 C G IL36RN Missense_Mutation p.S55C 0.07 tolerated(0.18) benign(0.008) TCGA-NC-A5HJ-01 2 125671762 125671762 A T CNTNAP5 Missense_Mutation p.Q1273L 0.08 deleterious(0.01) possibly_damaging(0.501) TCGA-NC-A5HJ-01 2 128262621 128262621 G A IWS1 Silent p.A286A 0.20 TCGA-NC-A5HJ-01 2 131520374 131520374 C A AMER3 Missense_Mutation p.S243R 0.16 deleterious(0) probably_damaging(1) TCGA-NC-A5HJ-01 2 135743819 135743819 T C MAP3K19 Missense_Mutation p.T875A 0.17 tolerated(0.71) benign(0.002) TCGA-NC-A5HJ-01 2 141115676 141115676 G T LRP1B Missense_Mutation p.T3756K 0.16 benign(0.403) TCGA-NC-A5HJ-01 2 157435477 157435477 G C GPD2 Missense_Mutation p.R615P 0.15 tolerated(0.2) benign(0.086) TCGA-NC-A5HJ-01 2 165984256 165984256 A G SCN3A Missense_Mutation p.F1093S 0.10 tolerated(0.06) probably_damaging(0.962) TCGA-NC-A5HJ-01 2 1665891 1665891 G A PXDN Missense_Mutation p.P545S 0.27 tolerated(0.28) benign(0.088) TCGA-NC-A5HJ-01 2 166894400 166894400 C A SCN1A Silent p.V944V 0.23 TCGA-NC-A5HJ-01 2 168725796 168725796 C T B3GALT1 Missense_Mutation p.L83F 0.10 deleterious(0.01) probably_damaging(0.948) TCGA-NC-A5HJ-01 2 176965488 176965488 G T HOXD12 Nonstop_Mutation p.*271Yext*26 0.35 TCGA-NC-A5HJ-01 2 179226422 179226422 G A OSBPL6 Silent p.L414L 0.08 TCGA-NC-A5HJ-01 2 179407902 179407902 G A TTN Silent p.S32266S 0.09 TCGA-NC-A5HJ-01 2 179439283 179439283 A G TTN Missense_Mutation p.L23859S 0.10 TCGA-NC-A5HJ-01 2 179440224 179440224 A C TTN Silent p.T23545T 0.07 TCGA-NC-A5HJ-01 2 179456041 179456041 G T TTN Silent p.T20137T 0.15 TCGA-NC-A5HJ-01 2 179478965 179478965 C A TTN Missense_Mutation p.V16387F 0.18 TCGA-NC-A5HJ-01 2 179616744 179616744 A T TTN Intron 0.25 TCGA-NC-A5HJ-01 2 189859310 189859310 G C COL3A1 Missense_Mutation p.R446P 0.20 unknown(0) TCGA-NC-A5HJ-01 2 196866496 196866496 G C DNAH7 Missense_Mutation p.S359C 0.13 deleterious(0.01) possibly_damaging(0.687) TCGA-NC-A5HJ-01 2 198571408 198571408 A C MARS2 Missense_Mutation p.T427P 0.22 tolerated(0.25) benign(0.001) TCGA-NC-A5HJ-01 2 204309670 204309670 T A RAPH1 Missense_Mutation p.H566L 0.09 possibly_damaging(0.858) TCGA-NC-A5HJ-01 2 209307134 209307134 T C PTH2R Missense_Mutation p.S153P 0.11 deleterious(0) probably_damaging(0.991) TCGA-NC-A5HJ-01 2 21233966 21233966 C A APOB Missense_Mutation p.G1925V 0.07 probably_damaging(0.999) TCGA-NC-A5HJ-01 2 219562278 219562278 A T STK36 Missense_Mutation p.M952L 0.08 tolerated(0.11) benign(0.001) TCGA-NC-A5HJ-01 2 220044870 220044870 G T FAM134A Missense_Mutation p.S153I 0.10 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HJ-01 2 232389943 232389943 T C NMUR1 Silent p.R364R 0.11 TCGA-NC-A5HJ-01 2 240984795 240984795 G T OR6B3 Missense_Mutation p.T232N 0.07 tolerated(0.22) benign(0.056) TCGA-NC-A5HJ-01 2 242283205 242283205 G C SEPT2 Missense_Mutation p.L245F 0.07 deleterious(0.02) benign(0.013) TCGA-NC-A5HJ-01 2 32639975 32639975 G T BIRC6 Missense_Mutation p.G539V 0.17 probably_damaging(0.999) TCGA-NC-A5HJ-01 2 44531231 44531231 C A SLC3A1 Intron 0.15 TCGA-NC-A5HJ-01 2 62449669 62449669 T C B3GNT2 Missense_Mutation p.V105A 0.17 tolerated(0.62) benign(0) TCGA-NC-A5HJ-01 2 89160098 89160098 T C IGKJ5 Missense_Mutation p.T8A 0.10 unknown(0) TCGA-NC-A5HJ-01 2 96781433 96781433 G A ADRA2B Silent p.G152G 0.11 TCGA-NC-A5HJ-01 2 98350892 98350892 T A ZAP70 Intron 0.50 TCGA-NC-A5HJ-01 3 107097195 107097195 T C CCDC54 Missense_Mutation p.V254A 0.14 deleterious(0.02) probably_damaging(0.914) TCGA-NC-A5HJ-01 3 111366476 111366476 C A CD96 Missense_Mutation p.L538I 0.08 deleterious(0.04) benign(0.07) TCGA-NC-A5HJ-01 3 113302276 113302276 G A SIDT1 Silent p.E256E 0.21 TCGA-NC-A5HJ-01 3 119101247 119101247 G T ARHGAP31 Splice_Site p.X180_splice 0.19 TCGA-NC-A5HJ-01 3 120413054 120413054 C A RABL3 Silent p.R184R 0.12 TCGA-NC-A5HJ-01 3 138739057 138739057 G - PRR23B Frame_Shift_Del p.A150Pfs*170 0.09 TCGA-NC-A5HJ-01 3 140281765 140281765 T A CLSTN2 Missense_Mutation p.N775K 0.09 deleterious(0) possibly_damaging(0.844) TCGA-NC-A5HJ-01 3 148614503 148614503 C A CPA3 3'UTR 0.07 TCGA-NC-A5HJ-01 3 151093932 151093932 A T MED12L Missense_Mutation p.Y1293F 0.11 deleterious(0) possibly_damaging(0.899) TCGA-NC-A5HJ-01 3 152553601 152553601 C T P2RY1 Silent p.P10P 0.11 TCGA-NC-A5HJ-01 3 160099512 160099512 T A IFT80 Missense_Mutation p.H13L 0.11 deleterious(0) possibly_damaging(0.776) TCGA-NC-A5HJ-01 3 17549986 17549986 C A TBC1D5 Missense_Mutation p.S26I 0.19 tolerated_low_confidence(0.09) benign(0.002) TCGA-NC-A5HJ-01 3 186978636 186978636 T G MASP1 Missense_Mutation p.E147A 0.20 tolerated(0.71) benign(0.036) TCGA-NC-A5HJ-01 3 38951622 38951622 C A SCN11A Missense_Mutation p.G346C 0.10 deleterious(0) probably_damaging(1) TCGA-NC-A5HJ-01 3 39226986 39226986 G T XIRP1 Silent p.T1317T 0.12 TCGA-NC-A5HJ-01 3 42739703 42739703 G C HHATL Silent p.L208L 0.16 TCGA-NC-A5HJ-01 3 48620559 48620559 C T COL7A1 Splice_Site p.X1494_splice 0.16 TCGA-NC-A5HJ-01 3 7503382 7503382 G A GRM7 Silent p.G496G 0.08 TCGA-NC-A5HJ-01 3 77657034 77657034 A C ROBO2 Silent p.L1090L 0.16 TCGA-NC-A5HJ-01 3 88189288 88189288 C T ZNF654 Silent p.N276N 0.11 TCGA-NC-A5HJ-01 3 96706525 96706525 C T EPHA6 Missense_Mutation p.R268C 0.05 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HJ-01 4 100197778 100197778 G T ADH1A 3'UTR 0.08 TCGA-NC-A5HJ-01 4 114264265 114264265 C A ANK2 Silent p.A1405A 0.19 TCGA-NC-A5HJ-01 4 114288804 114288804 C A ANK2 Silent p.T3705T 0.19 TCGA-NC-A5HJ-01 4 125591902 125591902 C T ANKRD50 Missense_Mutation p.D844N 0.17 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HJ-01 4 153573840 153573840 T A TMEM154 Nonsense_Mutation p.K102* 0.16 TCGA-NC-A5HJ-01 4 155219755 155219755 A G DCHS2 Missense_Mutation p.L1449P 0.07 tolerated(0.27) possibly_damaging(0.828) TCGA-NC-A5HJ-01 4 155461199 155461199 C A PLRG1 Missense_Mutation p.D316Y 0.15 deleterious(0) probably_damaging(1) TCGA-NC-A5HJ-01 4 164394886 164394886 T C TKTL2 Translation_Start_Site p.M1? 0.10 tolerated_low_confidence(0.09) benign(0) TCGA-NC-A5HJ-01 4 175598355 175598355 A C GLRA3 Missense_Mutation p.I267M 0.17 deleterious(0) possibly_damaging(0.758) TCGA-NC-A5HJ-01 4 176573139 176573139 C G GPM6A Splice_Site p.X130_splice 0.10 TCGA-NC-A5HJ-01 4 177109379 177109379 A T SPATA4 Missense_Mutation p.F232L 0.12 deleterious(0) possibly_damaging(0.783) TCGA-NC-A5HJ-01 4 187208852 187208852 A T F11 Missense_Mutation p.T531S 0.13 tolerated(0.13) benign(0.105) TCGA-NC-A5HJ-01 4 46263938 46263938 C G GABRA2 Intron 0.09 TCGA-NC-A5HJ-01 4 47405579 47405579 C A GABRB1 Missense_Mutation p.A229E 0.09 tolerated(0.1) possibly_damaging(0.5) TCGA-NC-A5HJ-01 4 55141012 55141012 C T PDGFRA Missense_Mutation p.P553L 0.20 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HJ-01 4 55599340 55599340 T G KIT Missense_Mutation p.N822K 0.24 deleterious(0) probably_damaging(1) TCGA-NC-A5HJ-01 4 57181541 57181541 G A KIAA1211 Missense_Mutation p.E625K 0.19 deleterious(0) possibly_damaging(0.486) TCGA-NC-A5HJ-01 4 77817977 77817977 G T SOWAHB Silent p.P342P 0.06 TCGA-NC-A5HJ-01 4 8613851 8613851 G T CPZ Missense_Mutation p.S442I 0.09 deleterious(0) probably_damaging(0.981) TCGA-NC-A5HJ-01 4 956352 956352 C G DGKQ Missense_Mutation p.E695D 0.15 tolerated(0.08) possibly_damaging(0.788) TCGA-NC-A5HJ-01 4 96106337 96106337 T A UNC5C Missense_Mutation p.H716L 0.11 tolerated(0.07) benign(0.017) TCGA-NC-A5HJ-01 4 96106338 96106338 G A UNC5C Missense_Mutation p.H716Y 0.11 deleterious(0) benign(0.065) TCGA-NC-A5HJ-01 5 1032273 1032273 C T NKD2 Missense_Mutation p.P50S 0.05 tolerated(0.36) possibly_damaging(0.568) TCGA-NC-A5HJ-01 5 110560284 110560284 G T CAMK4 Missense_Mutation p.D35Y 0.12 deleterious(0) possibly_damaging(0.809) TCGA-NC-A5HJ-01 5 137420210 137420210 T C WNT8A Silent p.S42S 0.09 TCGA-NC-A5HJ-01 5 138208861 138208861 G C LRRTM2 Missense_Mutation p.N463K 0.10 tolerated(0.34) benign(0.066) TCGA-NC-A5HJ-01 5 140209646 140209646 C A PCDHA6 Missense_Mutation p.P657Q 0.20 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-NC-A5HJ-01 5 140740265 140740265 G T PCDHGB2 Missense_Mutation p.G188V 0.07 deleterious(0.01) probably_damaging(0.974) TCGA-NC-A5HJ-01 5 141318090 141318090 G - KIAA0141 Frame_Shift_Del p.S441Afs*3 0.10 TCGA-NC-A5HJ-01 5 147040714 147040714 G T JAKMIP2 Silent p.R142R 0.08 TCGA-NC-A5HJ-01 5 161324296 161324296 T C GABRA1 Silent p.F413F 0.07 TCGA-NC-A5HJ-01 5 167850787 167850787 G A WWC1 Silent p.K508K 0.15 TCGA-NC-A5HJ-01 5 17354512 17354512 T C CTD-2139B15.2 RNA 0.15 TCGA-NC-A5HJ-01 5 180052998 180052998 G A FLT4 Missense_Mutation p.S431F 0.16 tolerated(0.1) possibly_damaging(0.908) TCGA-NC-A5HJ-01 5 180166218 180166218 T A OR2Y1 Missense_Mutation p.T281S 0.12 deleterious(0.04) benign(0.364) TCGA-NC-A5HJ-01 5 180651618 180651618 G C TRIM41 Missense_Mutation p.V207L 0.11 tolerated(0.17) benign(0.358) TCGA-NC-A5HJ-01 5 22078740 22078740 C T CDH12 Missense_Mutation p.D16N 0.05 tolerated(0.62) benign(0.043) TCGA-NC-A5HJ-01 5 26881562 26881562 C G CDH9 Missense_Mutation p.D685H 0.06 tolerated(0.11) possibly_damaging(0.76) TCGA-NC-A5HJ-01 5 26903857 26903857 G C CDH9 Missense_Mutation p.D296E 0.05 deleterious(0) benign(0.385) TCGA-NC-A5HJ-01 5 31515138 31515138 G C DROSHA Missense_Mutation p.T416S 0.06 tolerated(0.5) benign(0.023) TCGA-NC-A5HJ-01 5 33649717 33649717 C A ADAMTS12 Missense_Mutation p.D426Y 0.07 deleterious(0) probably_damaging(0.975) TCGA-NC-A5HJ-01 5 35068917 35068917 A T PRLR Nonsense_Mutation p.L250* 0.07 TCGA-NC-A5HJ-01 5 35876378 35876378 C T IL7R Silent p.C390C 0.14 TCGA-NC-A5HJ-01 5 43298225 43298225 G - HMGCS1 Frame_Shift_Del p.L154Wfs*2 0.10 TCGA-NC-A5HJ-01 5 43412380 43412380 G C CCL28 Silent p.V13V 0.19 TCGA-NC-A5HJ-01 5 52216174 52216174 G T ITGA1 Missense_Mutation p.R723L 0.16 tolerated(0.05) benign(0.249) TCGA-NC-A5HJ-01 5 52396269 52396269 A G MOCS2 Missense_Mutation p.L158S 0.13 deleterious(0) probably_damaging(0.996) TCGA-NC-A5HJ-01 5 81601151 81601151 A G ATP6AP1L 5'UTR 0.17 TCGA-NC-A5HJ-01 5 82836484 82836484 A T VCAN Missense_Mutation p.L2554F 0.11 tolerated(0.08) benign(0.177) TCGA-NC-A5HJ-01 6 116757248 116757248 A G DSE Silent p.G539G 0.12 TCGA-NC-A5HJ-01 6 132179828 132179828 A G ENPP1 Missense_Mutation p.K246E 0.23 tolerated(0.15) benign(0.042) TCGA-NC-A5HJ-01 6 133703530 133703530 G T EYA4 Missense_Mutation p.V12L 0.20 deleterious_low_confidence(0.01) benign(0.005) TCGA-NC-A5HJ-01 6 143074555 143074555 C A HIVEP2 Missense_Mutation p.A2344S 0.08 tolerated(0.54) benign(0.009) TCGA-NC-A5HJ-01 6 151670955 151670955 A T AKAP12 Missense_Mutation p.T477S 0.23 tolerated(0.67) benign(0.005) TCGA-NC-A5HJ-01 6 16327286 16327286 C A ATXN1 Missense_Mutation p.G419V 0.18 tolerated(0.13) probably_damaging(0.995) TCGA-NC-A5HJ-01 6 17637748 17637748 T G NUP153 Silent p.P700P 0.08 TCGA-NC-A5HJ-01 6 26285392 26285392 A T HIST1H4H 3'UTR 0.14 TCGA-NC-A5HJ-01 6 26405841 26405841 G T BTN3A1 Missense_Mutation p.C17F 0.13 tolerated(0.39) benign(0.001) TCGA-NC-A5HJ-01 6 30128264 30128264 A G TRIM10 Silent p.A124A 0.16 TCGA-NC-A5HJ-01 6 43271940 43271940 A T SLC22A7 Missense_Mutation p.Q517L 0.09 deleterious(0.05) benign(0.002) TCGA-NC-A5HJ-01 6 44371643 44371643 G T CDC5L Nonsense_Mutation p.E213* 0.07 TCGA-NC-A5HJ-01 6 49754609 49754609 C G PGK2 Missense_Mutation p.D98H 0.06 deleterious(0) probably_damaging(0.991) TCGA-NC-A5HJ-01 6 51890722 51890722 C A PKHD1 Nonsense_Mutation p.E1296* 0.14 TCGA-NC-A5HJ-01 6 72806813 72806813 G T RIMS1 Missense_Mutation p.R136L 0.10 deleterious(0) benign(0.056) TCGA-NC-A5HJ-01 6 74497072 74497072 T A CD109 Missense_Mutation p.V818D 0.11 deleterious(0) possibly_damaging(0.897) TCGA-NC-A5HJ-01 6 87725541 87725541 C G HTR1E Missense_Mutation p.H163Q 0.10 tolerated(0.43) benign(0.017) TCGA-NC-A5HJ-01 6 90333156 90333156 A T ANKRD6 Missense_Mutation p.S309C 0.27 deleterious(0) probably_damaging(0.984) TCGA-NC-A5HJ-01 6 97051650 97051650 T C FHL5 Splice_Site p.X53_splice 0.07 TCGA-NC-A5HJ-01 7 100176039 100176039 G A LRCH4 Silent p.P277P 0.21 TCGA-NC-A5HJ-01 7 100552303 100552303 C A MUC3A Missense_Mutation p.P352T 0.11 deleterious(0.03) benign(0.242) TCGA-NC-A5HJ-01 7 100552304 100552304 C T MUC3A Missense_Mutation p.P352L 0.11 deleterious(0) possibly_damaging(0.868) TCGA-NC-A5HJ-01 7 100679267 100679267 A T MUC17 Missense_Mutation p.T1524S 0.11 unknown(0) TCGA-NC-A5HJ-01 7 100684890 100684890 C G MUC17 Missense_Mutation p.T3398S 0.06 benign(0) TCGA-NC-A5HJ-01 7 100684891 100684891 C A MUC17 Silent p.T3398T 0.06 TCGA-NC-A5HJ-01 7 103180715 103180715 C A RELN Missense_Mutation p.G2287C 0.05 tolerated(0.06) benign(0.392) TCGA-NC-A5HJ-01 7 104747852 104747852 G T KMT2E Missense_Mutation p.R983I 0.09 deleterious_low_confidence(0.01) benign(0.308) TCGA-NC-A5HJ-01 7 104766700 104766700 C A SRPK2 Missense_Mutation p.R637L 0.07 deleterious(0) benign(0.168) TCGA-NC-A5HJ-01 7 106508765 106508765 C A PIK3CG Silent p.A253A 0.07 TCGA-NC-A5HJ-01 7 106509060 106509060 G T PIK3CG Missense_Mutation p.V352L 0.11 tolerated(0.2) benign(0.001) TCGA-NC-A5HJ-01 7 107696367 107696367 G T LAMB4 Silent p.G1155G 0.13 TCGA-NC-A5HJ-01 7 115594662 115594662 T A TFEC Missense_Mutation p.Q139H 0.12 deleterious(0) probably_damaging(0.991) TCGA-NC-A5HJ-01 7 131833314 131833314 C A PLXNA4 Silent p.L1584L 0.09 TCGA-NC-A5HJ-01 7 142099720 142099720 T A TRBV7-8 Missense_Mutation p.R28W 0.19 deleterious(0) probably_damaging(0.994) TCGA-NC-A5HJ-01 7 143633071 143633071 C A OR2F2 Missense_Mutation p.A249D 0.10 tolerated(0.14) benign(0.281) TCGA-NC-A5HJ-01 7 143748123 143748123 C A OR2A5 Missense_Mutation p.P210Q 0.14 deleterious(0) probably_damaging(0.996) TCGA-NC-A5HJ-01 7 146536874 146536874 C A CNTNAP2 Missense_Mutation p.Q94K 0.12 tolerated(0.08) benign(0.101) TCGA-NC-A5HJ-01 7 150325086 150325086 G T GIMAP6 Missense_Mutation p.N200K 0.07 deleterious(0) probably_damaging(0.966) TCGA-NC-A5HJ-01 7 151884533 151884533 C A KMT2C Missense_Mutation p.A1608S 0.12 benign(0.066) TCGA-NC-A5HJ-01 7 156526914 156526914 C A LMBR1 Missense_Mutation p.L265F 0.13 deleterious(0.02) possibly_damaging(0.82) TCGA-NC-A5HJ-01 7 2317753 2317753 C T SNX8 Silent p.E94E 0.08 TCGA-NC-A5HJ-01 7 24749928 24749928 G T DFNA5 Silent p.V259V 0.07 TCGA-NC-A5HJ-01 7 42004378 42004378 C T GLI3 Silent p.P1431P 0.08 TCGA-NC-A5HJ-01 7 44552954 44552954 G C NPC1L1 3'UTR 0.14 TCGA-NC-A5HJ-01 7 44574045 44574045 C - NPC1L1 Splice_Site p.X722_splice 0.15 TCGA-NC-A5HJ-01 7 86522267 86522267 C A KIAA1324L Silent p.L945L 0.10 TCGA-NC-A5HJ-01 7 88964803 88964803 G C ZNF804B Missense_Mutation p.C836S 0.08 tolerated(0.51) benign(0.218) TCGA-NC-A5HJ-01 7 89909180 89909180 G T C7orf63 Missense_Mutation p.A449S 0.20 deleterious(0.03) benign(0.108) TCGA-NC-A5HJ-01 7 92837958 92837958 C T HEPACAM2 Missense_Mutation p.C316Y 0.12 tolerated(0.06) probably_damaging(0.956) TCGA-NC-A5HJ-01 7 97823405 97823405 A C LMTK2 Missense_Mutation p.S1210R 0.06 tolerated(0.22) possibly_damaging(0.623) TCGA-NC-A5HJ-01 7 99171059 99171059 G T ZNF655 Missense_Mutation p.G478V 0.06 deleterious(0.01) probably_damaging(0.979) TCGA-NC-A5HJ-01 8 106456532 106456532 C G ZFPM2 Missense_Mutation p.T75R 0.14 tolerated(0.49) benign(0.079) TCGA-NC-A5HJ-01 8 109797285 109797285 G T TMEM74 Missense_Mutation p.L15I 0.08 tolerated(0.2) benign(0.406) TCGA-NC-A5HJ-01 8 113678603 113678603 G A CSMD3 Missense_Mutation p.L907F 0.16 deleterious(0) probably_damaging(1) TCGA-NC-A5HJ-01 8 139151229 139151229 C A FAM135B Missense_Mutation p.G1301W 0.08 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HJ-01 8 141445250 141445250 T A TRAPPC9 Missense_Mutation p.S372C 0.13 deleterious(0.01) possibly_damaging(0.8) TCGA-NC-A5HJ-01 8 144941337 144941337 T C EPPK1 Missense_Mutation p.T2029A 0.11 benign(0.334) TCGA-NC-A5HJ-01 8 145095837 145095837 C G SPATC1 Missense_Mutation p.P379A 0.10 tolerated_low_confidence(0.08) benign(0.016) TCGA-NC-A5HJ-01 8 2807858 2807858 G C CSMD1 Nonsense_Mutation p.Y3403* 0.08 TCGA-NC-A5HJ-01 8 36694395 36694395 G T KCNU1 Missense_Mutation p.A484S 0.07 deleterious(0) possibly_damaging(0.828) TCGA-NC-A5HJ-01 8 41798587 41798587 T C KAT6A Missense_Mutation p.R938G 0.10 benign(0.012) TCGA-NC-A5HJ-01 8 70978684 70978684 G T PRDM14 Missense_Mutation p.N323K 0.10 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HJ-01 8 77766782 77766782 C A ZFHX4 Missense_Mutation p.P2542H 0.08 probably_damaging(0.998) TCGA-NC-A5HJ-01 9 107267035 107267035 G T OR13F1 Silent p.L164L 0.07 TCGA-NC-A5HJ-01 9 114989882 114989882 T A PTBP3 Missense_Mutation p.R425S 0.17 deleterious(0) benign(0.016) TCGA-NC-A5HJ-01 9 116823834 116823834 C A AMBP Missense_Mutation p.M241I 0.10 tolerated(0.11) benign(0.032) TCGA-NC-A5HJ-01 9 137772670 137772670 G T FCN2 Translation_Start_Site p.M1? 0.10 deleterious_low_confidence(0.03) benign(0.001) TCGA-NC-A5HJ-01 9 137772671 137772671 G T FCN2 Nonsense_Mutation p.E2* 0.10 TCGA-NC-A5HJ-01 9 140140245 140140245 C G FAM166A Silent p.T39T 0.17 TCGA-NC-A5HJ-01 9 33442848 33442848 A G AQP3 Splice_Site p.X164_splice 0.06 TCGA-NC-A5HJ-01 9 35674065 35674065 C T CA9 Missense_Mutation p.P37S 0.11 deleterious_low_confidence(0.05) unknown(0) TCGA-NC-A5HJ-01 9 40772305 40772305 C A ZNF658 Silent p.G990G 0.10 TCGA-NC-A5HJ-01 9 43629309 43629309 C A SPATA31A6 Silent p.G67G 0.07 TCGA-NC-A5HJ-01 9 71836360 71836360 G T TJP2 Missense_Mutation p.R331S 0.38 tolerated(0.13) benign(0.197) TCGA-NC-A5HJ-01 9 73296435 73296435 T C TRPM3 Silent p.T444T 0.12 TCGA-NC-A5HJ-01 9 77390852 77390852 C T TRPM6 Missense_Mutation p.R1117H 0.11 tolerated(0.64) benign(0.002) TCGA-NC-A5HJ-01 9 78710833 78710833 G T PCSK5 Missense_Mutation p.V308F 0.14 deleterious(0) probably_damaging(1) TCGA-NC-A5HJ-01 9 78938175 78938175 A G PCSK5 Missense_Mutation p.Y1410C 0.09 deleterious(0) probably_damaging(0.99) TCGA-NC-A5HJ-01 9 84607528 84607528 C A SPATA31D1 Missense_Mutation p.P715T 0.10 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HJ-01 9 84607529 84607529 C A SPATA31D1 Missense_Mutation p.P715H 0.10 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HJ-01 9 90322096 90322096 G T DAPK1 Missense_Mutation p.E1370D 0.14 tolerated(0.36) benign(0.002) TCGA-NC-A5HJ-01 9 90501940 90501940 C T SPATA31E1 Silent p.H846H 0.16 TCGA-NC-A5HJ-01 X 102003867 102003867 G C BHLHB9 5'UTR 0.17 TCGA-NC-A5HJ-01 X 102529265 102529265 C A TCEAL5 Missense_Mutation p.G76V 0.10 deleterious(0) probably_damaging(0.996) TCGA-NC-A5HJ-01 X 105139438 105139438 C A NRK Missense_Mutation p.L168I 0.12 deleterious(0) probably_damaging(0.994) TCGA-NC-A5HJ-01 X 107979156 107979156 G T IRS4 Missense_Mutation p.P140Q 0.16 deleterious_low_confidence(0.05) benign(0.01) TCGA-NC-A5HJ-01 X 109924711 109924711 C T CHRDL1 Silent p.K385K 0.17 TCGA-NC-A5HJ-01 X 110555931 110555931 G C DCX Missense_Mutation p.P403R 0.20 deleterious(0.02) benign(0.235) TCGA-NC-A5HJ-01 X 1317513 1317513 C A CRLF2 Missense_Mutation p.W184C 0.14 deleterious(0) benign(0.1) TCGA-NC-A5HJ-01 X 136113047 136113047 G T GPR101 Missense_Mutation p.R263S 0.25 tolerated(0.43) benign(0.003) TCGA-NC-A5HJ-01 X 136649642 136649642 C A ZIC3 Silent p.P264P 0.22 TCGA-NC-A5HJ-01 X 138678876 138678876 C G MCF2 Missense_Mutation p.W779C 0.13 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HJ-01 X 139866591 139866591 C A CDR1 5'UTR 0.11 TCGA-NC-A5HJ-01 X 139866592 139866592 C A CDR1 5'UTR 0.11 TCGA-NC-A5HJ-01 X 146312360 146312360 G T MIR506 RNA 0.29 TCGA-NC-A5HJ-01 X 205448 205448 C T PLCXD1 Missense_Mutation p.S59L 0.07 tolerated(0.32) benign(0.037) TCGA-NC-A5HJ-01 X 23019978 23019978 G A DDX53 Missense_Mutation p.E602K 0.35 tolerated(0.09) benign(0.117) TCGA-NC-A5HJ-01 X 44120465 44120465 G A EFHC2 Silent p.V154V 0.29 TCGA-NC-A5HJ-01 X 50376882 50376882 C G SHROOM4 Missense_Mutation p.E731Q 0.19 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HJ-01 X 52896172 52896172 A C XAGE3 Intron 0.09 TCGA-NC-A5HJ-01 X 53106227 53106227 G T GPR173 Missense_Mutation p.A142S 0.17 deleterious(0.04) possibly_damaging(0.542) TCGA-NC-A5HJ-01 X 54569467 54569467 G A GNL3L Missense_Mutation p.R129H 0.29 tolerated(0.11) benign(0.002) TCGA-NC-A5HJ-01 X 55247835 55247835 G A PAGE5 Missense_Mutation p.R27K 0.22 tolerated(0.15) probably_damaging(0.934) TCGA-NC-A5HJ-01 X 57935071 57935071 T A ZXDA Missense_Mutation p.Q595L 0.21 deleterious(0.01) probably_damaging(0.978) TCGA-NC-A5HJ-01 X 65483529 65483529 A T HEPH Missense_Mutation p.K1135N 0.22 tolerated(0.35) benign(0.004) TCGA-NC-A5HJ-01 X 67413761 67413761 C A OPHN1 Missense_Mutation p.R391M 0.21 deleterious(0) probably_damaging(0.979) TCGA-NC-A5HJ-01 X 73040900 73040900 C A XIST RNA 0.27 TCGA-NC-A5HJ-01 X 79971743 79971743 C A BRWD3 Missense_Mutation p.Q746H 0.16 tolerated(0.09) probably_damaging(0.94) TCGA-NC-A5HK-01 10 101802194 101802194 C A CPN1 Missense_Mutation p.G456V 0.27 tolerated_low_confidence(0.09) benign(0.005) TCGA-NC-A5HK-01 10 102748023 102748023 G T C10orf2 Missense_Mutation p.G19V 0.38 deleterious_low_confidence(0.01) benign(0.002) TCGA-NC-A5HK-01 10 112839249 112839249 G T ADRA2A 3'UTR 0.28 TCGA-NC-A5HK-01 10 129845668 129845668 G A PTPRE Missense_Mutation p.G42S 0.54 tolerated(0.58) benign(0.001) TCGA-NC-A5HK-01 10 135165985 135165985 C A PRAP1 3'UTR 0.14 TCGA-NC-A5HK-01 10 17632412 17632412 T G PTPLA Missense_Mutation p.Q273P 0.36 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HK-01 10 22676871 22676871 C A SPAG6 Nonsense_Mutation p.Y266* 0.32 TCGA-NC-A5HK-01 10 24885808 24885808 T A ARHGAP21 Missense_Mutation p.D1113V 0.27 deleterious(0) probably_damaging(0.913) TCGA-NC-A5HK-01 10 26513569 26513569 T C GAD2 Missense_Mutation p.I238T 0.39 deleterious(0) probably_damaging(0.984) TCGA-NC-A5HK-01 10 26589801 26589801 T A GAD2 Missense_Mutation p.F557I 0.36 deleterious(0) probably_damaging(0.977) TCGA-NC-A5HK-01 10 26781327 26781327 G A APBB1IP Silent p.Q24Q 0.45 TCGA-NC-A5HK-01 10 81146184 81146184 C A ZCCHC24 Missense_Mutation p.V215L 0.20 tolerated(0.09) probably_damaging(0.996) TCGA-NC-A5HK-01 11 120099841 120099841 A G OAF Missense_Mutation p.Y271C 0.51 deleterious_low_confidence(0) unknown(0) TCGA-NC-A5HK-01 11 123900634 123900634 T A OR10G8 Missense_Mutation p.F102Y 0.33 deleterious(0) possibly_damaging(0.493) TCGA-NC-A5HK-01 11 14825509 14825509 G T PDE3B Missense_Mutation p.G479W 0.27 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HK-01 11 14825510 14825510 G T PDE3B Missense_Mutation p.G479V 0.27 deleterious(0) probably_damaging(0.959) TCGA-NC-A5HK-01 11 15197551 15197551 C T INSC Silent p.S154S 0.23 TCGA-NC-A5HK-01 11 20065629 20065629 C T NAV2 Missense_Mutation p.P1027S 0.28 tolerated(1) benign(0.014) TCGA-NC-A5HK-01 11 22398165 22398165 A G SLC17A6 Missense_Mutation p.T454A 0.14 deleterious(0) benign(0.122) TCGA-NC-A5HK-01 11 36614913 36614913 T A RAG2 Missense_Mutation p.D269V 0.23 deleterious(0.03) possibly_damaging(0.791) TCGA-NC-A5HK-01 11 375660 375692 ACCACGTGGCGCACGTCCCCCAGTCTCCAGCCA - B4GALNT4 In_Frame_Del p.D291_S302delinsG 0.21 TCGA-NC-A5HK-01 11 44639753 44639753 C T CD82 Silent p.D160D 0.20 TCGA-NC-A5HK-01 11 46419110 46419110 C G AMBRA1 Missense_Mutation p.A1173P 0.32 deleterious_low_confidence(0) benign(0.002) TCGA-NC-A5HK-01 11 48328133 48328133 G T OR4S1 Missense_Mutation p.R120L 0.37 deleterious(0) probably_damaging(0.995) TCGA-NC-A5HK-01 11 55587726 55587726 T A OR5D18 Missense_Mutation p.N207K 0.47 deleterious(0) probably_damaging(0.952) TCGA-NC-A5HK-01 11 55606919 55606919 C T OR5D16 Missense_Mutation p.P231L 0.11 tolerated(0.09) benign(0.158) TCGA-NC-A5HK-01 11 55927595 55927595 C A OR8K5 Missense_Mutation p.A67S 0.08 tolerated_low_confidence(0.1) probably_damaging(0.997) TCGA-NC-A5HK-01 11 56086139 56086139 C A OR8K3 Silent p.S119S 0.39 TCGA-NC-A5HK-01 11 56128027 56128027 G T OR8J1 Missense_Mutation p.G102V 0.23 tolerated(0.07) possibly_damaging(0.901) TCGA-NC-A5HK-01 11 56258688 56258688 C T OR5M8 Nonsense_Mutation p.W53* 0.22 TCGA-NC-A5HK-01 11 56344633 56344633 A T OR5M10 Missense_Mutation p.C189S 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-NC-A5HK-01 11 66626528 66626528 A C LRFN4 Missense_Mutation p.Q438P 0.20 deleterious(0.01) possibly_damaging(0.617) TCGA-NC-A5HK-01 11 71249543 71249543 T A KRTAP5-8 Missense_Mutation p.C148S 0.06 deleterious(0) unknown(0) TCGA-NC-A5HK-01 11 82868483 82868483 T C PCF11 Translation_Start_Site p.M1? 0.20 deleterious_low_confidence(0) possibly_damaging(0.692) TCGA-NC-A5HK-01 11 88781084 88781084 A G GRM5 5'UTR 0.29 TCGA-NC-A5HK-01 11 89224492 89224492 G A NOX4 5'UTR 0.77 TCGA-NC-A5HK-01 12 106831557 106831557 A G POLR3B Missense_Mutation p.K652R 0.36 tolerated(0.36) benign(0.005) TCGA-NC-A5HK-01 12 109723211 109723211 G - FOXN4 Frame_Shift_Del p.L267Cfs*4 0.23 TCGA-NC-A5HK-01 12 115120817 115120817 C A TBX3 Silent p.P63P 0.28 TCGA-NC-A5HK-01 12 130892285 130892285 T C RIMBP2 Missense_Mutation p.N971D 0.27 deleterious(0) probably_damaging(1) TCGA-NC-A5HK-01 12 19506924 19506924 G C PLEKHA5 Missense_Mutation p.M1042I 0.52 tolerated(0.21) benign(0.001) TCGA-NC-A5HK-01 12 21919140 21919140 A C KCNJ8 Silent p.P264P 0.26 TCGA-NC-A5HK-01 12 22680692 22680692 G T C2CD5 Silent p.V104V 0.37 TCGA-NC-A5HK-01 12 29446300 29446300 T C FAR2 Missense_Mutation p.L86P 0.11 deleterious(0) probably_damaging(0.989) TCGA-NC-A5HK-01 12 29596310 29596310 T A OVCH1 Silent p.P1047P 0.27 TCGA-NC-A5HK-01 12 32755213 32755213 C T FGD4 Missense_Mutation p.R319C 0.19 deleterious(0) benign(0.299) TCGA-NC-A5HK-01 12 49374976 49374976 G C WNT1 Silent p.G222G 0.40 TCGA-NC-A5HK-01 12 57629558 57629558 G C NDUFA4L2 Missense_Mutation p.R61G 0.26 deleterious(0) benign(0.282) TCGA-NC-A5HK-01 12 78452822 78452822 C A NAV3 Silent p.R855R 0.42 TCGA-NC-A5HK-01 12 99640551 99640551 A G ANKS1B Silent p.C616C 0.26 TCGA-NC-A5HK-01 13 109459148 109459148 G T MYO16 Missense_Mutation p.G266V 0.52 deleterious(0) probably_damaging(1) TCGA-NC-A5HK-01 13 113516813 113516813 G T ATP11A Missense_Mutation p.G972V 0.30 deleterious(0) probably_damaging(0.959) TCGA-NC-A5HK-01 13 39263874 39263874 G T FREM2 Missense_Mutation p.R798L 0.38 deleterious(0.02) benign(0.228) TCGA-NC-A5HK-01 13 97638925 97638925 A C OXGR1 3'UTR 0.23 TCGA-NC-A5HK-01 14 101200563 101200563 G C DLK1 Missense_Mutation p.G161A 0.60 deleterious(0.01) probably_damaging(1) TCGA-NC-A5HK-01 14 105207568 105207568 G A ADSSL1 Missense_Mutation p.D304N 0.54 deleterious(0) probably_damaging(0.984) TCGA-NC-A5HK-01 14 107083245 107083245 C T IGHV4-59 Missense_Mutation p.R120K 0.44 deleterious_low_confidence(0.03) benign(0.006) TCGA-NC-A5HK-01 14 20216370 20216370 C A OR4Q3 Missense_Mutation p.P262T 0.30 deleterious(0.01) possibly_damaging(0.906) TCGA-NC-A5HK-01 14 20216371 20216371 C G OR4Q3 Missense_Mutation p.P262R 0.30 deleterious(0) probably_damaging(0.953) TCGA-NC-A5HK-01 14 21490240 21490240 C A NDRG2 Missense_Mutation p.A109S 0.57 deleterious(0.03) benign(0.178) TCGA-NC-A5HK-01 14 30046596 30046596 C T PRKD1 Missense_Mutation p.E863K 0.41 deleterious(0.03) possibly_damaging(0.87) TCGA-NC-A5HK-01 14 39787163 39787163 G T CTAGE5 Missense_Mutation p.A475S 0.54 deleterious(0) possibly_damaging(0.89) TCGA-NC-A5HK-01 14 45700438 45700438 G T MIS18BP1 Missense_Mutation p.D500E 0.26 tolerated(0.39) benign(0.006) TCGA-NC-A5HK-01 14 53570512 53570512 C A DDHD1 Nonsense_Mutation p.E301* 0.45 TCGA-NC-A5HK-01 14 69387836 69387836 C T ACTN1 Missense_Mutation p.R76H 0.30 tolerated(0.07) possibly_damaging(0.774) TCGA-NC-A5HK-01 14 70883738 70883738 G C SYNJ2BP 5'UTR 0.43 TCGA-NC-A5HK-01 15 43552431 43552431 G T TGM5 Silent p.P85P 0.11 TCGA-NC-A5HK-01 15 50535061 50535061 C A HDC Missense_Mutation p.R462I 0.13 tolerated(0.35) benign(0.374) TCGA-NC-A5HK-01 15 63031670 63031670 G A TLN2 Missense_Mutation p.A1271T 0.31 tolerated(0.59) benign(0.002) TCGA-NC-A5HK-01 15 65157589 65157589 G A PLEKHO2 Missense_Mutation p.M325I 0.12 tolerated(0.24) benign(0.001) TCGA-NC-A5HK-01 15 72302779 72302779 T C MYO9A Missense_Mutation p.T389A 0.20 tolerated(0.21) benign(0.01) TCGA-NC-A5HK-01 15 72668248 72668248 G C HEXA Silent p.A22A 0.20 TCGA-NC-A5HK-01 15 84373180 84373180 G T ADAMTSL3 Nonsense_Mutation p.E37* 0.27 TCGA-NC-A5HK-01 16 1818873 1818873 C G MAPK8IP3 3'UTR 0.33 TCGA-NC-A5HK-01 16 28596272 28596272 C T CCDC101 Silent p.I38I 0.31 TCGA-NC-A5HK-01 16 28948616 28948616 G A CD19 Missense_Mutation p.G408D 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-NC-A5HK-01 16 28975064 28975064 G A NFATC2IP Silent p.E380E 0.12 TCGA-NC-A5HK-01 16 30409115 30409115 C T ZNF48 Missense_Mutation p.R182W 0.38 deleterious(0) probably_damaging(0.973) TCGA-NC-A5HK-01 16 31422476 31422476 C G ITGAD Missense_Mutation p.A479G 0.10 deleterious(0) possibly_damaging(0.793) TCGA-NC-A5HK-01 16 31926705 31926705 C G ZNF267 Missense_Mutation p.L379V 0.11 deleterious(0.01) benign(0.191) TCGA-NC-A5HK-01 16 89256789 89256789 C T CDH15 Missense_Mutation p.P373S 0.46 deleterious(0) probably_damaging(1) TCGA-NC-A5HK-01 17 10351332 10351332 G T MYH4 Missense_Mutation p.L1590I 0.47 tolerated(0.23) benign(0.017) TCGA-NC-A5HK-01 17 10408217 10408217 C A MYH1 Silent p.L867L 0.31 TCGA-NC-A5HK-01 17 33807116 33807116 C G SLFN12L Missense_Mutation p.R38T 0.50 tolerated(0.06) benign(0.202) TCGA-NC-A5HK-01 17 38928281 38928281 C T KRT26 Missense_Mutation p.V29M 0.29 tolerated(0.13) possibly_damaging(0.454) TCGA-NC-A5HK-01 17 60043993 60043993 T C MED13 Missense_Mutation p.H1404R 0.36 deleterious(0) probably_damaging(0.958) TCGA-NC-A5HK-01 17 61611621 61611621 G T KCNH6 Missense_Mutation p.M350I 0.68 tolerated(0.14) benign(0.102) TCGA-NC-A5HK-01 17 66871486 66871486 C T ABCA8 Missense_Mutation p.E1476K 0.43 deleterious(0.01) probably_damaging(0.994) TCGA-NC-A5HK-01 17 7578280 7578280 G A TP53 Missense_Mutation p.P190L 0.42 deleterious(0.05) possibly_damaging(0.812) TCGA-NC-A5HK-01 18 14542746 14542746 G C POTEC Missense_Mutation p.H134D 0.10 deleterious(0.05) possibly_damaging(0.84) TCGA-NC-A5HK-01 18 14851784 14851784 T C ANKRD30B Silent p.L1162L 0.33 TCGA-NC-A5HK-01 18 7949266 7949266 A T PTPRM Missense_Mutation p.T251S 0.48 tolerated(0.99) benign(0.002) TCGA-NC-A5HK-01 19 11448113 11448113 C A RAB3D 5'UTR 0.47 TCGA-NC-A5HK-01 19 13084374 13084374 A G DAND5 Missense_Mutation p.S166G 0.46 tolerated(0.47) benign(0.012) TCGA-NC-A5HK-01 19 15490605 15490605 C G AKAP8L 3'Flank 0.27 TCGA-NC-A5HK-01 19 21607743 21607743 T C ZNF493 Missense_Mutation p.I761T 0.27 tolerated(0.18) benign(0.098) TCGA-NC-A5HK-01 19 22154509 22154509 T A ZNF208 Silent p.G1109G 0.40 TCGA-NC-A5HK-01 19 35802830 35802830 G A MAG Silent p.V542V 0.50 TCGA-NC-A5HK-01 19 36237319 36237319 G - PSENEN Splice_Site p.X22_splice 0.38 TCGA-NC-A5HK-01 19 42482333 42482333 C A ATP1A3 Silent p.A605A 0.59 TCGA-NC-A5HK-01 19 43349430 43349430 G C PSG10P RNA 0.08 TCGA-NC-A5HK-01 19 45574114 45574114 G C CLASRP 3'UTR 0.15 TCGA-NC-A5HK-01 19 48636295 48636295 G A LIG1 Missense_Mutation p.R557C 0.23 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HK-01 19 49174177 49174177 G T NTN5 Missense_Mutation p.Q23K 0.27 tolerated(0.18) benign(0.034) TCGA-NC-A5HK-01 19 51729309 51729309 G C CD33 Silent p.T223T 0.45 TCGA-NC-A5HK-01 19 5229332 5229332 C A PTPRS Nonsense_Mutation p.E791* 0.50 TCGA-NC-A5HK-01 19 55142962 55142962 A C LILRB1 Missense_Mutation p.K28Q 0.49 deleterious(0.01) benign(0.387) TCGA-NC-A5HK-01 19 55693192 55693192 G A PTPRH Missense_Mutation p.P1093L 0.47 benign(0.001) TCGA-NC-A5HK-01 19 56410189 56410189 T A NLRP13 Silent p.G968G 0.58 TCGA-NC-A5HK-01 19 56443476 56443476 G T NLRP13 Missense_Mutation p.L68M 0.35 deleterious(0.02) possibly_damaging(0.454) TCGA-NC-A5HK-01 1 100634081 100634081 C A LRRC39 5'UTR 0.45 TCGA-NC-A5HK-01 1 103540306 103540306 C A COL11A1 Missense_Mutation p.K173N 0.40 probably_damaging(0.973) TCGA-NC-A5HK-01 1 1119299 1119299 G T TTLL10 Splice_Site p.X363_splice 0.14 TCGA-NC-A5HK-01 1 150940347 150940347 T A CERS2 Missense_Mutation p.R139S 0.25 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HK-01 1 151260637 151260637 G A ZNF687 Missense_Mutation p.V624I 0.14 tolerated(0.2) benign(0.001) TCGA-NC-A5HK-01 1 154471659 154471659 T C SHE Missense_Mutation p.Q216R 0.39 tolerated(0.06) possibly_damaging(0.904) TCGA-NC-A5HK-01 1 155912596 155912596 A C RXFP4 Missense_Mutation p.T366P 0.15 deleterious_low_confidence(0.01) benign(0.203) TCGA-NC-A5HK-01 1 156911178 156911178 T A ARHGEF11 Missense_Mutation p.E1167V 0.35 deleterious_low_confidence(0.03) benign(0.023) TCGA-NC-A5HK-01 1 157666124 157666124 G T FCRL3 Intron 0.33 TCGA-NC-A5HK-01 1 158581149 158581149 C A SPTA1 Missense_Mutation p.A2389S 0.10 tolerated(0.06) benign(0.307) TCGA-NC-A5HK-01 1 159176168 159176168 C A DARC Silent p.R315R 0.16 TCGA-NC-A5HK-01 1 16462239 16462239 G A EPHA2 Missense_Mutation p.R447C 0.26 deleterious(0.02) probably_damaging(0.946) TCGA-NC-A5HK-01 1 168250309 168250309 G A TBX19 5'UTR 0.09 TCGA-NC-A5HK-01 1 173569277 173569277 G A SLC9C2 Silent p.H69H 0.33 TCGA-NC-A5HK-01 1 175113680 175113680 C T TNN Silent p.H1251H 0.15 TCGA-NC-A5HK-01 1 177247798 177247798 G T BRINP2 Missense_Mutation p.R371L 0.40 deleterious(0.02) probably_damaging(0.995) TCGA-NC-A5HK-01 1 196946713 196946713 G T CFHR5 5'UTR 0.37 TCGA-NC-A5HK-01 1 196946714 196946714 T C CFHR5 5'UTR 0.36 TCGA-NC-A5HK-01 1 196973833 196973833 G C CFHR5 Missense_Mutation p.G458A 0.09 deleterious(0) probably_damaging(1) TCGA-NC-A5HK-01 1 198677298 198677298 T C PTPRC Missense_Mutation p.V314A 0.34 tolerated(0.75) benign(0) TCGA-NC-A5HK-01 1 201845276 201845276 A G IPO9 3'UTR 0.39 TCGA-NC-A5HK-01 1 203155726 203155726 C A CHI3L1 Splice_Site p.X9_splice 0.25 TCGA-NC-A5HK-01 1 214170806 214170806 C A PROX1 Silent p.R310R 0.31 TCGA-NC-A5HK-01 1 235403669 235403669 T A ARID4B Missense_Mutation p.I182F 0.24 tolerated(0.18) benign(0.005) TCGA-NC-A5HK-01 1 237955438 237955438 C T RYR2 Missense_Mutation p.L4533F 0.36 benign(0.008) TCGA-NC-A5HK-01 1 247654537 247654537 C G OR2W5 RNA 0.25 TCGA-NC-A5HK-01 1 247654670 247654670 C A OR2W5 RNA 0.29 TCGA-NC-A5HK-01 1 247752248 247752248 C T OR2G2 Missense_Mutation p.T196M 0.32 deleterious(0.05) probably_damaging(0.973) TCGA-NC-A5HK-01 1 247902476 247902476 G C OR14K1 Missense_Mutation p.C187S 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-NC-A5HK-01 1 248224555 248224555 C T OR2L3 Missense_Mutation p.T191I 0.28 deleterious(0.03) possibly_damaging(0.458) TCGA-NC-A5HK-01 1 248756730 248756730 G A OR2T10 Missense_Mutation p.L114F 0.76 deleterious(0.01) benign(0.167) TCGA-NC-A5HK-01 1 28203208 28203208 C A THEMIS2 Missense_Mutation p.S68R 0.56 deleterious(0.02) benign(0.009) TCGA-NC-A5HK-01 1 28203209 28203209 C A THEMIS2 Missense_Mutation p.Q69K 0.56 deleterious(0.01) possibly_damaging(0.622) TCGA-NC-A5HK-01 1 31907080 31907080 G A SERINC2 3'UTR 0.24 TCGA-NC-A5HK-01 1 41483566 41483566 T A SLFNL1 Missense_Mutation p.E233V 0.57 deleterious(0) possibly_damaging(0.858) TCGA-NC-A5HK-01 1 52255041 52255041 G T NRD1 Missense_Mutation p.S1176Y 0.28 deleterious(0.01) possibly_damaging(0.73) TCGA-NC-A5HK-01 1 53362113 53362113 G T ECHDC2 3'UTR 0.42 TCGA-NC-A5HK-01 20 21143023 21143023 G T RP4-777D9.2 Intron 0.38 TCGA-NC-A5HK-01 20 29966177 29966177 C T DEFB118 3'Flank 0.06 TCGA-NC-A5HK-01 20 3804835 3804835 G T AP5S1 Missense_Mutation p.R165L 0.33 deleterious(0.02) benign(0.005) TCGA-NC-A5HK-01 20 398484 398484 G T RBCK1 Missense_Mutation p.D124Y 0.15 deleterious(0.03) probably_damaging(0.98) TCGA-NC-A5HK-01 20 52192596 52192596 G A ZNF217 Missense_Mutation p.R903W 0.47 deleterious(0) probably_damaging(0.988) TCGA-NC-A5HK-01 20 57244413 57244413 G T STX16 Nonsense_Mutation p.E154* 0.47 TCGA-NC-A5HK-01 21 10914404 10914404 T C TPTE Missense_Mutation p.K439E 0.18 deleterious(0.02) possibly_damaging(0.542) TCGA-NC-A5HK-01 21 11047552 11047552 C A BAGE2 RNA 0.06 TCGA-NC-A5HK-01 21 16338355 16338355 G A NRIP1 Missense_Mutation p.P720L 0.21 deleterious(0.03) benign(0.107) TCGA-NC-A5HK-01 21 31768892 31768892 G C KRTAP13-1 Missense_Mutation p.R163T 0.12 tolerated(0.07) possibly_damaging(0.619) TCGA-NC-A5HK-01 21 46086450 46086450 C A KRTAP12-2 Silent p.P118P 0.45 TCGA-NC-A5HK-01 22 19965505 19965505 C T ARVCF Silent p.V558V 0.12 TCGA-NC-A5HK-01 22 19967667 19967667 C T ARVCF Missense_Mutation p.S332N 0.11 deleterious(0) probably_damaging(0.985) TCGA-NC-A5HK-01 22 20939178 20939179 - A MED15 Frame_Shift_Ins p.Q615Afs*53 0.12 TCGA-NC-A5HK-01 22 22162119 22162119 C A MAPK1 Missense_Mutation p.V46F 0.62 tolerated(0.26) benign(0.005) TCGA-NC-A5HK-01 22 35659850 35659850 A T HMGXB4 Missense_Mutation p.D81V 0.59 deleterious(0) probably_damaging(0.915) TCGA-NC-A5HK-01 22 46688737 46688737 G T TTC38 Nonsense_Mutation p.E456* 0.53 TCGA-NC-A5HK-01 2 113940955 113940955 G A PSD4 Missense_Mutation p.D308N 0.24 deleterious_low_confidence(0.01) benign(0.372) TCGA-NC-A5HK-01 2 120223373 120223373 A G SCTR Silent p.C165C 0.33 TCGA-NC-A5HK-01 2 125547637 125547637 G T CNTNAP5 Missense_Mutation p.G970W 0.31 deleterious(0.02) probably_damaging(1) TCGA-NC-A5HK-01 2 131803680 131803680 A T ARHGEF4 Missense_Mutation p.Q664L 0.26 deleterious(0) possibly_damaging(0.83) TCGA-NC-A5HK-01 2 137928323 137928323 G T THSD7B Missense_Mutation p.R513M 0.09 deleterious(0) possibly_damaging(0.702) TCGA-NC-A5HK-01 2 149868147 149868147 G C KIF5C Missense_Mutation p.G944A 0.16 tolerated(0.13) benign(0.02) TCGA-NC-A5HK-01 2 150427598 150427598 C A MMADHC Splice_Site p.X232_splice 0.38 TCGA-NC-A5HK-01 2 152512926 152512926 C A NEB Missense_Mutation p.R2079L 0.26 possibly_damaging(0.897) TCGA-NC-A5HK-01 2 157332720 157332720 G A GPD2 Splice_Site p.X34_splice 0.29 TCGA-NC-A5HK-01 2 163256779 163256779 C A KCNH7 Missense_Mutation p.G776V 0.32 deleterious(0) probably_damaging(1) TCGA-NC-A5HK-01 2 179424577 179424577 C T TTN Missense_Mutation p.R28761K 0.36 TCGA-NC-A5HK-01 2 179467275 179467275 G C TTN Missense_Mutation p.T18285R 0.33 TCGA-NC-A5HK-01 2 179640236 179640236 C T TTN Missense_Mutation p.E2119K 0.32 TCGA-NC-A5HK-01 2 185803247 185803247 G T ZNF804A Missense_Mutation p.D1042Y 0.20 deleterious(0) possibly_damaging(0.67) TCGA-NC-A5HK-01 2 196834814 196834814 C A DNAH7 Missense_Mutation p.R688L 0.18 deleterious(0.01) possibly_damaging(0.877) TCGA-NC-A5HK-01 2 207174509 207174509 G T ZDBF2 Missense_Mutation p.A1753S 0.16 tolerated(0.14) benign(0.364) TCGA-NC-A5HK-01 2 208576829 208576829 A G CCNYL1 Missense_Mutation p.E70G 0.26 deleterious(0) possibly_damaging(0.844) TCGA-NC-A5HK-01 2 208631653 208631653 C T FZD5 3'UTR 0.18 TCGA-NC-A5HK-01 2 211471460 211471460 T G CPS1 Missense_Mutation p.S669A 0.22 deleterious(0) possibly_damaging(0.654) TCGA-NC-A5HK-01 2 212652838 212652838 A G ERBB4 Silent p.C156C 0.25 TCGA-NC-A5HK-01 2 220494019 220494019 C T SLC4A3 Missense_Mutation p.P124L 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-NC-A5HK-01 2 224746698 224746698 C T WDFY1 Missense_Mutation p.R342Q 0.35 deleterious(0) probably_damaging(0.964) TCGA-NC-A5HK-01 2 231282312 231282312 G T SP100 Silent p.L13L 0.39 TCGA-NC-A5HK-01 2 233273236 233273236 C G ALPPL2 Missense_Mutation p.T270S 0.26 tolerated(0.21) benign(0.003) TCGA-NC-A5HK-01 2 235950263 235950263 C T SH3BP4 Nonsense_Mutation p.R284* 0.34 TCGA-NC-A5HK-01 2 238249680 238249680 C A COL6A3 Missense_Mutation p.A2627S 0.12 unknown(0) TCGA-NC-A5HK-01 2 44036863 44036863 G A DYNC2LI1 Missense_Mutation p.R338K 0.11 tolerated(0.48) benign(0.012) TCGA-NC-A5HK-01 2 44101080 44101080 G A ABCG8 Missense_Mutation p.G456S 0.72 tolerated(0.47) possibly_damaging(0.811) TCGA-NC-A5HK-01 2 85578126 85578126 C A RETSAT Missense_Mutation p.R125L 0.51 deleterious(0.02) benign(0.258) TCGA-NC-A5HK-01 2 89399563 89399563 G T IGKV1-16 Missense_Mutation p.A47E 0.61 deleterious(0.01) benign(0.331) TCGA-NC-A5HK-01 3 102189311 102189311 C T ZPLD1 Missense_Mutation p.A352V 0.19 tolerated(0.13) possibly_damaging(0.83) TCGA-NC-A5HK-01 3 11348489 11348489 C G ATG7 Missense_Mutation p.F96L 0.69 deleterious(0) possibly_damaging(0.609) TCGA-NC-A5HK-01 3 122964766 122964766 G T SEC22A Missense_Mutation p.A188S 0.15 deleterious(0) benign(0.024) TCGA-NC-A5HK-01 3 134670862 134670862 G T EPHB1 Missense_Mutation p.G258V 0.38 deleterious(0) probably_damaging(0.978) TCGA-NC-A5HK-01 3 147113933 147113933 A C ZIC4 Missense_Mutation p.W182G 0.42 deleterious(0) probably_damaging(0.993) TCGA-NC-A5HK-01 3 160285800 160285800 G T KPNA4 5'Flank 0.29 TCGA-NC-A5HK-01 3 164906085 164906085 C A SLITRK3 Missense_Mutation p.G845V 0.19 tolerated_low_confidence(0.22) probably_damaging(0.972) TCGA-NC-A5HK-01 3 167033541 167033541 C T ZBBX Missense_Mutation p.R424Q 0.09 tolerated(1) benign(0) TCGA-NC-A5HK-01 3 171320998 171320998 C G PLD1 Missense_Mutation p.R1032P 0.41 tolerated(0.11) possibly_damaging(0.447) TCGA-NC-A5HK-01 3 180381776 180381776 T A CCDC39 Splice_Site p.X31_splice 0.20 TCGA-NC-A5HK-01 3 183996305 183996305 C A ECE2 Missense_Mutation p.P377H 0.34 deleterious(0) probably_damaging(0.983) TCGA-NC-A5HK-01 3 2908599 2908599 G T CNTN4 Silent p.L206L 0.75 TCGA-NC-A5HK-01 3 44491113 44491113 C A ZNF445 Nonsense_Mutation p.G275* 0.55 TCGA-NC-A5HK-01 3 46539624 46539625 GT - RTP3 Frame_Shift_Del p.W25Dfs*36 0.31 TCGA-NC-A5HK-01 3 73112085 73112085 G T EBLN2 3'UTR 0.28 TCGA-NC-A5HK-01 3 89259535 89259535 A T EPHA3 Nonsense_Mutation p.R227* 0.20 TCGA-NC-A5HK-01 3 96706757 96706757 G T EPHA6 Missense_Mutation p.G345V 0.26 deleterious(0.01) probably_damaging(1) TCGA-NC-A5HK-01 3 97888301 97888301 G A OR5H15 Missense_Mutation p.G253D 0.44 deleterious(0) probably_damaging(0.99) TCGA-NC-A5HK-01 4 2082709 2082709 G T POLN Missense_Mutation p.A788D 0.41 deleterious(0) probably_damaging(0.93) TCGA-NC-A5HK-01 4 4199505 4199505 C T OTOP1 Silent p.L352L 0.47 TCGA-NC-A5HK-01 4 49040136 49040136 A T CWH43 Missense_Mutation p.Y581F 0.40 deleterious(0.01) probably_damaging(0.997) TCGA-NC-A5HK-01 4 52861804 52861804 G T LRRC66 Missense_Mutation p.Q462K 0.49 tolerated(0.14) benign(0.015) TCGA-NC-A5HK-01 4 67142579 67142579 C A MIR1269A RNA 0.37 TCGA-NC-A5HK-01 4 70921228 70921228 C G HTN1 Nonsense_Mutation p.S39* 0.53 TCGA-NC-A5HK-01 5 140188209 140188209 G T PCDHA4 Silent p.A479A 0.39 TCGA-NC-A5HK-01 5 140188520 140188520 G T PCDHA4 Missense_Mutation p.W583L 0.38 tolerated_low_confidence(0.09) benign(0.045) TCGA-NC-A5HK-01 5 140203140 140203140 C T PCDHA5 Missense_Mutation p.R594C 0.49 deleterious_low_confidence(0.01) probably_damaging(0.965) TCGA-NC-A5HK-01 5 140347989 140347989 T C PCDHAC2 Silent p.F546F 0.43 TCGA-NC-A5HK-01 5 153181952 153181952 G T GRIA1 Missense_Mutation p.G818C 0.42 deleterious(0) probably_damaging(1) TCGA-NC-A5HK-01 5 153181953 153181953 G T GRIA1 Missense_Mutation p.G818V 0.41 deleterious(0) probably_damaging(1) TCGA-NC-A5HK-01 5 155935614 155935614 G T SGCD Nonsense_Mutation p.G66* 0.31 TCGA-NC-A5HK-01 5 155935615 155935615 G T SGCD Missense_Mutation p.G66V 0.31 deleterious(0) probably_damaging(1) TCGA-NC-A5HK-01 5 158585615 158585615 G A RNF145 3'UTR 0.09 TCGA-NC-A5HK-01 5 160034013 160034013 G AA ATP10B Frame_Shift_Ins p.G975Wfs*81 0.12 TCGA-NC-A5HK-01 5 21975475 21975475 T A CDH12 Missense_Mutation p.K84M 0.22 deleterious(0.03) probably_damaging(0.983) TCGA-NC-A5HK-01 5 24487976 24487976 A C CDH10 Missense_Mutation p.H721Q 0.15 deleterious(0.03) benign(0.239) TCGA-NC-A5HK-01 5 24498607 24498607 C T CDH10 Missense_Mutation p.R472H 0.20 tolerated(0.46) probably_damaging(0.994) TCGA-NC-A5HK-01 5 33448824 33448824 G A TARS Missense_Mutation p.A106T 0.72 deleterious(0) probably_damaging(0.984) TCGA-NC-A5HK-01 5 35965975 35965975 G A UGT3A1 Missense_Mutation p.T119I 0.59 tolerated(0.4) benign(0.001) TCGA-NC-A5HK-01 5 36039683 36039683 G T UGT3A2 Missense_Mutation p.P324H 0.71 deleterious(0) probably_damaging(0.965) TCGA-NC-A5HK-01 5 36039684 36039684 G T UGT3A2 Missense_Mutation p.P324T 0.71 deleterious(0) possibly_damaging(0.835) TCGA-NC-A5HK-01 5 36117856 36117856 T C LMBRD2 Missense_Mutation p.Y428C 0.07 deleterious(0) probably_damaging(0.975) TCGA-NC-A5HK-01 5 37063931 37063931 G A NIPBL Missense_Mutation p.E2634K 0.76 deleterious(0.01) benign(0.427) TCGA-NC-A5HK-01 5 41051089 41051089 C A MROH2B Missense_Mutation p.G445V 0.61 tolerated(0.08) benign(0.311) TCGA-NC-A5HK-01 5 41159327 41159327 C A C6 Missense_Mutation p.W571C 0.77 deleterious(0) probably_damaging(1) TCGA-NC-A5HK-01 5 41159328 41159328 C G C6 Missense_Mutation p.W571S 0.78 deleterious(0) probably_damaging(1) TCGA-NC-A5HK-01 5 5473841 5473841 G C KIAA0947 Missense_Mutation p.W2131C 0.09 deleterious(0) probably_damaging(1) TCGA-NC-A5HK-01 5 881282 881282 T A BRD9 Missense_Mutation p.R328W 0.55 deleterious(0) possibly_damaging(0.684) TCGA-NC-A5HK-01 5 9052083 9052083 C G SEMA5A Missense_Mutation p.R916P 0.09 deleterious(0) probably_damaging(1) TCGA-NC-A5HK-01 6 102503293 102503293 G T GRIK2 Missense_Mutation p.R800S 0.29 tolerated(0.14) benign(0.025) TCGA-NC-A5HK-01 6 108224074 108224074 G A SEC63 Missense_Mutation p.L395F 0.32 deleterious(0.02) possibly_damaging(0.497) TCGA-NC-A5HK-01 6 137113262 137113262 A T MAP3K5 Missense_Mutation p.S12T 0.31 tolerated_low_confidence(0.11) benign(0.014) TCGA-NC-A5HK-01 6 144811281 144811281 G T UTRN Silent p.L1403L 0.24 TCGA-NC-A5HK-01 6 146126097 146126097 G T FBXO30 Missense_Mutation p.A482D 0.06 deleterious(0) probably_damaging(0.996) TCGA-NC-A5HK-01 6 157529019 157529019 G T ARID1B Missense_Mutation p.Q2248H 0.21 probably_damaging(0.995) TCGA-NC-A5HK-01 6 167786676 167786676 C T TCP10 Missense_Mutation p.R321K 0.29 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-NC-A5HK-01 6 26104300 26104300 G T HIST1H4C Missense_Mutation p.G42V 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-NC-A5HK-01 6 2678582 2678582 C A MYLK4 Silent p.L304L 0.23 TCGA-NC-A5HK-01 6 28293923 28293923 C T ZSCAN31 3'UTR 0.23 TCGA-NC-A5HK-01 6 31742377 31742377 C T VWA7 Missense_Mutation p.E213K 0.54 tolerated(0.3) benign(0.01) TCGA-NC-A5HK-01 6 33423599 33423599 C T ZBTB9 Missense_Mutation p.S241L 0.26 tolerated(0.1) benign(0.079) TCGA-NC-A5HK-01 6 46656399 46656399 C T TDRD6 Silent p.R178R 0.29 TCGA-NC-A5HK-01 6 47846558 47846558 C G PTCHD4 Silent p.L674L 0.16 TCGA-NC-A5HK-01 6 51913356 51913356 G T PKHD1 Silent p.R781R 0.42 TCGA-NC-A5HK-01 6 56880084 56880084 C T BEND6 Missense_Mutation p.S151F 0.29 deleterious(0) benign(0.328) TCGA-NC-A5HK-01 6 56880086 56880086 A G BEND6 Missense_Mutation p.N152D 0.30 tolerated_low_confidence(0.16) possibly_damaging(0.899) TCGA-NC-A5HK-01 6 66063361 66063361 C T EYS Silent p.L483L 0.36 TCGA-NC-A5HK-01 6 70639410 70639410 G T COL19A1 Nonsense_Mutation p.E162* 0.20 TCGA-NC-A5HK-01 6 74123418 74123418 C A DDX43 Missense_Mutation p.T469N 0.31 tolerated(0.32) benign(0.082) TCGA-NC-A5HK-01 6 89388069 89388069 T A RNGTT Intron 0.28 TCGA-NC-A5HK-01 6 94120852 94120852 G T EPHA7 Missense_Mutation p.P67T 0.20 tolerated(0.21) probably_damaging(1) TCGA-NC-A5HK-01 7 100452310 100452310 G C SLC12A9 Missense_Mutation p.A84P 0.24 tolerated(0.2) benign(0.393) TCGA-NC-A5HK-01 7 100482442 100482442 G T SRRT Nonsense_Mutation p.E342* 0.25 TCGA-NC-A5HK-01 7 107571930 107571930 G T LAMB1 Missense_Mutation p.L1470M 0.15 tolerated(0.11) benign(0.016) TCGA-NC-A5HK-01 7 117385900 117385900 G T CTTNBP2 Missense_Mutation p.L1174M 0.27 tolerated(0.09) benign(0.081) TCGA-NC-A5HK-01 7 123092901 123092901 G T IQUB Missense_Mutation p.L758M 0.17 tolerated(0.96) benign(0.099) TCGA-NC-A5HK-01 7 131825548 131825548 T A PLXNA4 Missense_Mutation p.N1750Y 0.16 deleterious(0) probably_damaging(1) TCGA-NC-A5HK-01 7 138601961 138601961 A G KIAA1549 Missense_Mutation p.L804S 0.10 tolerated(0.14) benign(0.012) TCGA-NC-A5HK-01 7 140301583 140301583 C G DENND2A Silent p.L205L 0.28 TCGA-NC-A5HK-01 7 142448532 142448532 C G TRBV29-1 Missense_Mutation p.S42R 0.52 tolerated(0.32) probably_damaging(0.927) TCGA-NC-A5HK-01 7 151944985 151944985 A T KMT2C Splice_Site p.X844_splice 0.09 TCGA-NC-A5HK-01 7 2472344 2472344 G T CHST12 Missense_Mutation p.V24L 0.52 tolerated(0.19) benign(0.015) TCGA-NC-A5HK-01 7 73008189 73008189 C A MLXIPL 3'UTR 0.37 TCGA-NC-A5HK-01 7 82545739 82545739 G C PCLO Missense_Mutation p.R3855G 0.15 unknown(0) TCGA-NC-A5HK-01 7 82579853 82579853 C G PCLO Missense_Mutation p.A3351P 0.14 unknown(0) TCGA-NC-A5HK-01 7 86415915 86415915 G A GRM3 Silent p.A269A 0.38 TCGA-NC-A5HK-01 7 86468703 86468703 T A GRM3 Missense_Mutation p.S625T 0.34 deleterious(0.03) benign(0.282) TCGA-NC-A5HK-01 7 88963414 88963414 A T ZNF804B Missense_Mutation p.Y373F 0.15 deleterious(0.04) possibly_damaging(0.876) TCGA-NC-A5HK-01 7 91727434 91727434 A G AKAP9 Missense_Mutation p.E3540G 0.21 probably_damaging(0.999) TCGA-NC-A5HK-01 8 109796622 109796622 G A TMEM74 Missense_Mutation p.L236F 0.25 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HK-01 8 109796953 109796953 C A TMEM74 Silent p.R125R 0.32 TCGA-NC-A5HK-01 8 132956992 132956992 G T EFR3A Missense_Mutation p.D30Y 0.21 deleterious(0) probably_damaging(0.995) TCGA-NC-A5HK-01 8 139163573 139163573 T A FAM135B Nonsense_Mutation p.K1049* 0.28 TCGA-NC-A5HK-01 8 139163770 139163770 C A FAM135B Missense_Mutation p.G983V 0.28 tolerated(0.08) benign(0.017) TCGA-NC-A5HK-01 8 140743263 140743263 C A TRAPPC9 3'UTR 0.21 TCGA-NC-A5HK-01 8 144992921 144992921 C A PLEC Missense_Mutation p.G3827C 0.35 probably_damaging(1) TCGA-NC-A5HK-01 8 144992922 144992922 C A PLEC Silent p.T3826T 0.35 TCGA-NC-A5HK-01 8 145557219 145557219 C A SCRT1 Silent p.P225P 0.38 TCGA-NC-A5HK-01 8 15588184 15588184 C G TUSC3 Missense_Mutation p.H270D 0.27 deleterious(0) possibly_damaging(0.568) TCGA-NC-A5HK-01 8 17920728 17920728 G A ASAH1 Missense_Mutation p.H173Y 0.14 deleterious(0) probably_damaging(1) TCGA-NC-A5HK-01 8 3265440 3265440 C A CSMD1 Silent p.G684G 0.40 TCGA-NC-A5HK-01 8 39626935 39626935 C A ADAM2 Missense_Mutation p.E396D 0.11 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HK-01 8 70515469 70515469 C A SULF1 Silent p.I368I 0.15 TCGA-NC-A5HK-01 8 88296948 88296948 C A CNBD1 Missense_Mutation p.Q272K 0.20 tolerated(0.28) benign(0.033) TCGA-NC-A5HK-01 8 92988200 92988200 G - RUNX1T1 Frame_Shift_Del p.D438Efs*30 0.25 TCGA-NC-A5HK-01 8 95547198 95547198 T C KIAA1429 Missense_Mutation p.N118S 0.31 tolerated(0.49) benign(0.016) TCGA-NC-A5HK-01 8 95547200 95547200 A T KIAA1429 Nonsense_Mutation p.Y117* 0.31 TCGA-NC-A5HK-01 8 95655623 95655623 G T ESRP1 Silent p.L118L 0.35 TCGA-NC-A5HK-01 9 115805072 115805072 G C ZFP37 Missense_Mutation p.T609S 0.17 tolerated(0.13) benign(0.003) TCGA-NC-A5HK-01 9 117240878 117240878 G C DFNB31 Missense_Mutation p.D264E 0.55 tolerated(1) benign(0.001) TCGA-NC-A5HK-01 9 21971060 21971060 C A CDKN2A Missense_Mutation p.A100S 0.47 tolerated(0.39) possibly_damaging(0.51) TCGA-NC-A5HK-01 9 33366712 33366712 G T NFX1 Missense_Mutation p.G1042V 0.33 deleterious(0.03) benign(0.2) TCGA-NC-A5HK-01 9 82333773 82333773 G A TLE4 Missense_Mutation p.V493M 0.28 deleterious(0) probably_damaging(1) TCGA-NC-A5HK-01 9 84532880 84532880 G T SPATA31D5P RNA 0.29 TCGA-NC-A5HK-01 X 101909012 101909012 G C GPRASP1 Missense_Mutation p.K57N 0.11 deleterious(0.04) benign(0.013) TCGA-NC-A5HK-01 X 102884976 102884976 G T TCEAL1 Silent p.S44S 0.25 TCGA-NC-A5HK-01 X 118223660 118223660 C T KIAA1210 Silent p.K511K 0.39 TCGA-NC-A5HK-01 X 118540486 118540486 G C SLC25A43 Silent p.G113G 0.12 TCGA-NC-A5HK-01 X 122866857 122866857 C G THOC2 Missense_Mutation p.V6L 0.10 tolerated(0.73) benign(0.001) TCGA-NC-A5HK-01 X 123205166 123205166 T A STAG2 Missense_Mutation p.N842K 0.20 tolerated(0.62) benign(0.138) TCGA-NC-A5HK-01 X 123480428 123480428 G T SH2D1A 5'UTR 0.11 TCGA-NC-A5HK-01 X 123514857 123514857 C A TENM1 Silent p.G2576G 0.29 TCGA-NC-A5HK-01 X 127185575 127185575 G T ACTRT1 Missense_Mutation p.P204H 0.11 tolerated(0.26) probably_damaging(0.988) TCGA-NC-A5HK-01 X 129148017 129148017 T G BCORL1 Silent p.P423P 0.25 TCGA-NC-A5HK-01 X 133700316 133700316 C A PLAC1 Missense_Mutation p.A133S 0.12 deleterious(0.03) possibly_damaging(0.453) TCGA-NC-A5HK-01 X 13618152 13618152 C A EGFL6 Missense_Mutation p.H113Q 0.21 deleterious(0.02) possibly_damaging(0.872) TCGA-NC-A5HK-01 X 137714871 137714871 A T FGF13 3'Flank 0.11 TCGA-NC-A5HK-01 X 138880894 138880894 C A ATP11C Missense_Mutation p.G243V 0.11 deleterious(0) probably_damaging(1) TCGA-NC-A5HK-01 X 140996476 140996476 C A MAGEC1 Missense_Mutation p.P1096T 0.13 deleterious(0) unknown(0) TCGA-NC-A5HK-01 X 141291113 141291113 C T MAGEC2 Missense_Mutation p.D221N 0.17 tolerated(0.24) possibly_damaging(0.46) TCGA-NC-A5HK-01 X 154489917 154489917 C A RAB39B 3'UTR 0.40 TCGA-NC-A5HK-01 X 154493608 154493608 G T RAB39B 5'UTR 0.16 TCGA-NC-A5HK-01 X 21675970 21675970 C A KLHL34 5'UTR 0.47 TCGA-NC-A5HK-01 X 26157793 26157793 G C MAGEB18 Missense_Mutation p.D231H 0.42 deleterious(0) benign(0.21) TCGA-NC-A5HK-01 X 322149 322149 C G PPP2R3B Silent p.L167L 0.23 TCGA-NC-A5HK-01 X 35974275 35974275 G T CXorf22 Missense_Mutation p.D458Y 0.15 tolerated(0.39) probably_damaging(0.927) TCGA-NC-A5HK-01 X 40540076 40540076 G T MED14 Missense_Mutation p.H848Q 0.08 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HK-01 X 41555089 41555089 G T GPR34 Missense_Mutation p.G68V 0.12 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HK-01 X 48340850 48340850 G T FTSJ1 Missense_Mutation p.G239W 0.18 deleterious(0) probably_damaging(1) TCGA-NC-A5HK-01 X 48370805 48370805 C A PORCN Missense_Mutation p.F155L 0.30 deleterious(0.01) possibly_damaging(0.824) TCGA-NC-A5HK-01 X 55514860 55514860 G C USP51 Missense_Mutation p.D171E 0.21 tolerated_low_confidence(0.34) benign(0) TCGA-NC-A5HK-01 X 6069334 6069334 T C NLGN4X Silent p.L58L 0.26 TCGA-NC-A5HK-01 X 63615263 63615263 G T MTMR8 5'UTR 0.26 TCGA-NC-A5HK-01 X 65825031 65825031 G C EDA2R Missense_Mutation p.T42R 0.22 deleterious(0.03) benign(0.022) TCGA-NC-A5HK-01 X 67741255 67741255 G T YIPF6 Missense_Mutation p.G117V 0.26 deleterious(0) probably_damaging(0.958) TCGA-NC-A5HK-01 X 70468162 70468162 C A ZMYM3 Missense_Mutation p.D609Y 0.21 deleterious(0.02) possibly_damaging(0.879) TCGA-NC-A5HK-01 X 70683833 70683833 C A TAF1 Missense_Mutation p.D1873E 0.38 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-NC-A5HK-01 X 73045732 73045732 A C XIST RNA 0.28 TCGA-NC-A5HK-01 X 73046345 73046345 T A XIST RNA 0.20 TCGA-NC-A5HK-01 X 73065181 73065181 A G XIST RNA 0.07 TCGA-NC-A5HK-01 X 73065306 73065306 A T XIST RNA 0.12 TCGA-NC-A5HK-01 X 77393266 77393266 G - TAF9B Frame_Shift_Del p.L129* 0.16 TCGA-NC-A5HK-01 X 79277787 79277787 G T TBX22 Missense_Mutation p.A7S 0.17 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HK-01 X 84362794 84362794 G C SATL1 Missense_Mutation p.P394R 0.13 tolerated(0.44) probably_damaging(0.996) TCGA-NC-A5HK-01 X 91131969 91131969 G T PCDH11X Missense_Mutation p.D244Y 0.17 deleterious(0) probably_damaging(1) TCGA-NC-A5HK-01 X 95990763 95990763 C A DIAPH2 Missense_Mutation p.Q47K 0.14 tolerated(0.39) unknown(0) TCGA-NC-A5HL-01 10 105139708 105139709 AA - TAF5 Frame_Shift_Del p.K449Tfs*31 0.32 TCGA-NC-A5HL-01 10 124361535 124361535 T G DMBT1 Missense_Mutation p.V1189G 0.15 deleterious(0.01) unknown(0) TCGA-NC-A5HL-01 10 124802665 124802665 C T ACADSB Missense_Mutation p.P262L 0.47 tolerated(0.1) possibly_damaging(0.616) TCGA-NC-A5HL-01 10 18254509 18254509 C A SLC39A12 Missense_Mutation p.T214N 0.11 deleterious(0.03) benign(0.342) TCGA-NC-A5HL-01 10 21097514 21097514 C A NEBL Missense_Mutation p.D896Y 0.09 tolerated(0.08) benign(0.013) TCGA-NC-A5HL-01 10 35929129 35929129 C A FZD8 Missense_Mutation p.S410I 0.12 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HL-01 10 50723609 50723609 G A ERCC6-PGBD3 Missense_Mutation p.R986C 0.12 tolerated_low_confidence(0.11) unknown(0) TCGA-NC-A5HL-01 10 5416113 5416113 C G UCN3 Missense_Mutation p.R144G 0.13 deleterious(0) probably_damaging(0.913) TCGA-NC-A5HL-01 10 61834665 61834665 A G ANK3 Missense_Mutation p.F1992L 0.14 possibly_damaging(0.899) TCGA-NC-A5HL-01 10 73082667 73082675 CACATACAT - SLC29A3 In_Frame_Del p.T53_I55del 0.23 TCGA-NC-A5HL-01 10 75873970 75873970 G A VCL Missense_Mutation p.R993H 0.48 deleterious(0.01) probably_damaging(0.996) TCGA-NC-A5HL-01 10 76735311 76735311 C T KAT6B Missense_Mutation p.R406W 0.44 benign(0.006) TCGA-NC-A5HL-01 10 90354533 90354533 G A LIPJ Missense_Mutation p.G147S 0.39 deleterious(0.02) benign(0.357) TCGA-NC-A5HL-01 10 91177212 91177212 T G IFIT5 Missense_Mutation p.S86A 0.18 tolerated(1) benign(0.004) TCGA-NC-A5HL-01 10 96306240 96306240 G A HELLS Silent p.R46R 0.10 TCGA-NC-A5HL-01 10 97096434 97096434 A T SORBS1 Missense_Mutation p.S1161R 0.43 deleterious_low_confidence(0) possibly_damaging(0.791) TCGA-NC-A5HL-01 11 102482532 102482532 T A MMP20 Missense_Mutation p.R159S 0.37 deleterious(0.02) possibly_damaging(0.719) TCGA-NC-A5HL-01 11 106681179 106681179 A G GUCY1A2 Missense_Mutation p.I411T 0.36 deleterious(0) probably_damaging(0.969) TCGA-NC-A5HL-01 11 114441777 114441777 G T NXPE4 Silent p.L506L 0.25 TCGA-NC-A5HL-01 11 118827590 118827590 C A UPK2 Intron 0.38 TCGA-NC-A5HL-01 11 124763756 124763756 C A ROBO4 Missense_Mutation p.G502C 0.19 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HL-01 11 13441123 13441123 T G BTBD10 Silent p.A156A 0.35 TCGA-NC-A5HL-01 11 13514036 13514036 A T PTH Missense_Mutation p.N88K 0.32 deleterious(0.05) probably_damaging(0.986) TCGA-NC-A5HL-01 11 17449442 17449442 C T ABCC8 Silent p.L696L 0.16 TCGA-NC-A5HL-01 11 4903216 4903216 C T OR51T1 Silent p.I56I 0.41 TCGA-NC-A5HL-01 11 4903334 4903334 G C OR51T1 Missense_Mutation p.A96P 0.46 deleterious(0) possibly_damaging(0.452) TCGA-NC-A5HL-01 11 5067956 5067956 T C OR52J3 Silent p.I67I 0.15 TCGA-NC-A5HL-01 11 5254161 5254161 C A HBD 3'UTR 0.41 TCGA-NC-A5HL-01 11 55563813 55563813 A T OR5D14 Missense_Mutation p.Y261F 0.24 deleterious(0.02) possibly_damaging(0.833) TCGA-NC-A5HL-01 11 5878912 5878912 C T OR52E8 Silent p.T7T 0.16 TCGA-NC-A5HL-01 11 63990598 63990598 C T FERMT3 Silent p.D587D 0.15 TCGA-NC-A5HL-01 11 7689764 7689764 C G CYB5R2 Silent p.T139T 0.36 TCGA-NC-A5HL-01 11 77590005 77590005 G A INTS4 Missense_Mutation p.A961V 0.25 tolerated(0.87) benign(0.11) TCGA-NC-A5HL-01 11 92086012 92086012 G A FAT3 Missense_Mutation p.G245E 0.06 probably_damaging(1) TCGA-NC-A5HL-01 12 10588515 10588515 G T KLRC2 Missense_Mutation p.P24H 0.06 deleterious(0.02) possibly_damaging(0.685) TCGA-NC-A5HL-01 12 107141288 107141288 C A RFX4 Silent p.S578S 0.25 TCGA-NC-A5HL-01 12 107141289 107141289 C A RFX4 Missense_Mutation p.Q579K 0.24 deleterious_low_confidence(0.01) benign(0.085) TCGA-NC-A5HL-01 12 108128060 108128060 G A PRDM4 Missense_Mutation p.S778F 0.09 tolerated_low_confidence(0.06) benign(0.259) TCGA-NC-A5HL-01 12 12022821 12022821 G T ETV6 Silent p.R309R 0.22 TCGA-NC-A5HL-01 12 121131942 121131942 A G MLEC Missense_Mutation p.D95G 0.29 deleterious(0) probably_damaging(1) TCGA-NC-A5HL-01 12 122999726 122999726 T A RSRC2 Missense_Mutation p.L217F 0.29 tolerated(0.71) unknown(0) TCGA-NC-A5HL-01 12 123072256 123072256 A G KNTC1 Splice_Site p.X1244_splice 0.29 TCGA-NC-A5HL-01 12 33579092 33579092 C T SYT10 Missense_Mutation p.E164K 0.16 tolerated(0.11) benign(0.166) TCGA-NC-A5HL-01 12 49484908 49484908 T C DHH Intron 0.29 TCGA-NC-A5HL-01 12 50264374 50264374 C T FAIM2 Silent p.E288E 0.09 TCGA-NC-A5HL-01 12 53453566 53453566 G T TENC1 Missense_Mutation p.G724V 0.21 deleterious(0.04) possibly_damaging(0.831) TCGA-NC-A5HL-01 12 54757326 54757326 T A GPR84 Missense_Mutation p.N104Y 0.19 deleterious(0) possibly_damaging(0.766) TCGA-NC-A5HL-01 12 65460453 65460453 G A WIF1 Missense_Mutation p.P233L 0.33 deleterious(0) probably_damaging(1) TCGA-NC-A5HL-01 12 7289641 7289641 A G CLSTN3 Missense_Mutation p.H382R 0.42 tolerated(0.1) possibly_damaging(0.874) TCGA-NC-A5HL-01 12 7528077 7528077 G T CD163L1 Missense_Mutation p.A934D 0.16 deleterious(0) probably_damaging(1) TCGA-NC-A5HL-01 12 85449555 85449555 A T LRRIQ1 Silent p.I328I 0.21 TCGA-NC-A5HL-01 12 97306456 97306456 A G NEDD1 Intron 0.22 TCGA-NC-A5HL-01 13 36686069 36686069 G A DCLK1 Silent p.I220I 0.11 TCGA-NC-A5HL-01 13 38210993 38210993 C G TRPC4 3'UTR 0.31 TCGA-NC-A5HL-01 14 100402408 100402408 A G EML1 Missense_Mutation p.Y670C 0.43 deleterious(0.02) benign(0.106) TCGA-NC-A5HL-01 14 106805505 106805505 G A IGHV4-31 Nonsense_Mutation p.Q20* 0.07 TCGA-NC-A5HL-01 14 21900017 21900017 C A CHD8 5'Flank 0.40 TCGA-NC-A5HL-01 14 80669512 80669512 A G DIO2 Silent p.L150L 0.31 TCGA-NC-A5HL-01 14 91338340 91338340 T C RPS6KA5 3'UTR 0.48 TCGA-NC-A5HL-01 14 94464490 94464490 G C LINC00521 RNA 0.14 TCGA-NC-A5HL-01 15 23889826 23889826 C A MAGEL2 Nonsense_Mutation p.E419* 0.63 TCGA-NC-A5HL-01 15 49833976 49833976 T C FAM227B Missense_Mutation p.I259V 0.54 tolerated(0.16) benign(0.138) TCGA-NC-A5HL-01 15 51221324 51221324 G C AP4E1 Missense_Mutation p.V221L 0.21 deleterious(0) benign(0.436) TCGA-NC-A5HL-01 15 66782086 66782086 T A MAP2K1 Missense_Mutation p.D351E 0.33 deleterious(0.01) benign(0.073) TCGA-NC-A5HL-01 15 73636111 73636111 C A HCN4 Missense_Mutation p.G275V 0.46 deleterious(0.03) possibly_damaging(0.472) TCGA-NC-A5HL-01 16 112645 112645 C T RHBDF1 Missense_Mutation p.E282K 0.16 deleterious(0.04) possibly_damaging(0.895) TCGA-NC-A5HL-01 16 2089835 2089835 A G NTHL1 3'UTR 0.29 TCGA-NC-A5HL-01 16 31424567 31424567 G T ITGAD Missense_Mutation p.G666C 0.13 deleterious(0) probably_damaging(0.988) TCGA-NC-A5HL-01 16 336944 336944 C T PDIA2 Missense_Mutation p.P511L 0.35 tolerated(0.07) benign(0.002) TCGA-NC-A5HL-01 16 58552860 58552860 G C SETD6 Missense_Mutation p.R450T 0.33 deleterious(0) probably_damaging(0.994) TCGA-NC-A5HL-01 16 70942619 70942619 G A HYDIN Missense_Mutation p.S2717F 0.41 benign(0.071) TCGA-NC-A5HL-01 16 90001281 90001281 G A TUBB3 Missense_Mutation p.G141D 0.25 deleterious_low_confidence(0) probably_damaging(1) TCGA-NC-A5HL-01 17 15231310 15231310 G A TEKT3 Missense_Mutation p.T221M 0.20 tolerated(0.06) benign(0.094) TCGA-NC-A5HL-01 17 17062101 17062101 G A MPRIP Missense_Mutation p.A611T 0.12 tolerated(0.28) benign(0.003) TCGA-NC-A5HL-01 17 3030714 3030714 G A OR1G1 Silent p.L44L 0.47 TCGA-NC-A5HL-01 17 30349640 30349640 C G LRRC37B Missense_Mutation p.P492R 0.38 tolerated(0.11) probably_damaging(0.937) TCGA-NC-A5HL-01 17 34937892 34937892 G A GGNBP2 Missense_Mutation p.R380K 0.21 tolerated(0.27) benign(0.027) TCGA-NC-A5HL-01 17 53014037 53014037 G A TOM1L1 Silent p.L294L 0.37 TCGA-NC-A5HL-01 17 59560501 59560501 C T TBX4 Missense_Mutation p.T421I 0.07 deleterious(0.01) probably_damaging(0.996) TCGA-NC-A5HL-01 17 62750564 62750564 G A hsa-mir-6080 RNA 0.17 TCGA-NC-A5HL-01 17 71166010 71166010 G A SSTR2 Silent p.R184R 0.16 TCGA-NC-A5HL-01 17 7579463 7579463 G - TP53 Frame_Shift_Del p.P75Lfs*48 0.34 TCGA-NC-A5HL-01 17 7579917 7579917 G T TP53 5'UTR 0.37 TCGA-NC-A5HL-01 17 79204371 79204371 C A ENTHD2 Silent p.P334P 0.37 TCGA-NC-A5HL-01 17 79827766 79827766 A G ARHGDIA Missense_Mutation p.I14T 0.35 tolerated(0.17) benign(0.019) TCGA-NC-A5HL-01 18 13056215 13056215 G A CEP192 Missense_Mutation p.R1209H 0.27 tolerated(0.11) benign(0.001) TCGA-NC-A5HL-01 18 2931268 2931268 C - LPIN2 Frame_Shift_Del p.G481Efs*25 0.15 TCGA-NC-A5HL-01 18 32886806 32886806 G C ZNF271 RNA 0.28 TCGA-NC-A5HL-01 18 5407716 5407716 G T EPB41L3 Missense_Mutation p.A714E 0.23 tolerated(0.17) benign(0.14) TCGA-NC-A5HL-01 18 55103398 55103398 G A ONECUT2 Silent p.T150T 0.28 TCGA-NC-A5HL-01 18 59483593 59483593 C G RNF152 Missense_Mutation p.C35S 0.64 deleterious(0) probably_damaging(0.991) TCGA-NC-A5HL-01 18 65180272 65180272 C T DSEL Nonsense_Mutation p.W535* 0.64 TCGA-NC-A5HL-01 19 10445415 10445415 A G ICAM3 Silent p.H327H 0.25 TCGA-NC-A5HL-01 19 11332881 11332881 C A DOCK6 Missense_Mutation p.S1095I 0.36 tolerated(0.07) benign(0.007) TCGA-NC-A5HL-01 19 12986687 12986687 T C DNASE2 3'UTR 0.23 TCGA-NC-A5HL-01 19 13409641 13409641 G T CACNA1A Missense_Mutation p.Q936K 0.34 benign(0.092) TCGA-NC-A5HL-01 19 16987326 16987326 G A SIN3B Silent p.V964V 0.10 TCGA-NC-A5HL-01 19 18507032 18507032 C G LRRC25 Missense_Mutation p.G248R 0.10 deleterious(0) probably_damaging(0.991) TCGA-NC-A5HL-01 19 19414841 19414841 T C SUGP1 Intron 0.43 TCGA-NC-A5HL-01 19 19764826 19764826 G C ATP13A1 Silent p.L647L 0.22 TCGA-NC-A5HL-01 19 20308206 20308206 G C ZNF486 Missense_Mutation p.K229N 0.37 deleterious(0.01) probably_damaging(0.937) TCGA-NC-A5HL-01 19 21476284 21476284 T G ZNF708 Missense_Mutation p.K495T 0.47 deleterious(0.04) probably_damaging(0.97) TCGA-NC-A5HL-01 19 22847599 22847599 G T ZNF492 Silent p.R376R 0.37 TCGA-NC-A5HL-01 19 2877321 2877321 G A ZNF556 Missense_Mutation p.R122H 0.24 tolerated(0.53) benign(0.234) TCGA-NC-A5HL-01 19 31769042 31769042 C T TSHZ3 Missense_Mutation p.A553T 0.04 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HL-01 19 35612195 35612195 G T FXYD3 Intron 0.08 TCGA-NC-A5HL-01 19 37619805 37619805 A T ZNF420 Missense_Mutation p.T638S 0.08 tolerated(0.08) benign(0.132) TCGA-NC-A5HL-01 19 38980855 38980855 G T RYR1 Missense_Mutation p.S1985I 0.08 benign(0.001) TCGA-NC-A5HL-01 19 39106861 39106861 G A MAP4K1 Missense_Mutation p.A96V 0.07 deleterious(0) probably_damaging(0.99) TCGA-NC-A5HL-01 19 39735514 39735514 G A IFNL3 Missense_Mutation p.P32S 0.05 tolerated(0.6) benign(0.067) TCGA-NC-A5HL-01 19 40376836 40376836 G A FCGBP Silent p.F3862F 0.09 TCGA-NC-A5HL-01 19 41518684 41518684 C G CYP2B6 Missense_Mutation p.L420V 0.04 deleterious(0.03) benign(0.097) TCGA-NC-A5HL-01 19 41931909 41931909 G A B3GNT8 Missense_Mutation p.H259Y 0.39 tolerated(0.98) benign(0.015) TCGA-NC-A5HL-01 19 52249822 52249822 G T FPR1 Silent p.A142A 0.51 TCGA-NC-A5HL-01 19 54649779 54649779 G T CNOT3 Silent p.T279T 0.06 TCGA-NC-A5HL-01 19 6457537 6457537 C T SLC25A23 Silent p.E116E 0.41 TCGA-NC-A5HL-01 19 6479684 6479684 C A DENND1C Nonsense_Mutation p.E58* 0.21 TCGA-NC-A5HL-01 1 101004651 101004651 C T GPR88 Silent p.I43I 0.54 TCGA-NC-A5HL-01 1 109794124 109794124 C T CELSR2 Nonsense_Mutation p.R475* 0.17 TCGA-NC-A5HL-01 1 119964445 119964445 G C HSD3B2 Silent p.L107L 0.37 TCGA-NC-A5HL-01 1 142713196 142713196 C G RP11-417J8.6 RNA 0.08 TCGA-NC-A5HL-01 1 151149228 151149228 G A VPS72 Silent p.A340A 0.46 TCGA-NC-A5HL-01 1 157669500 157669500 G T FCRL3 Missense_Mutation p.P12T 0.57 deleterious(0) probably_damaging(0.983) TCGA-NC-A5HL-01 1 159683801 159683801 C A CRP Silent p.S63S 0.55 TCGA-NC-A5HL-01 1 169762235 169762235 A G METTL18 Missense_Mutation p.L201P 0.35 deleterious(0) probably_damaging(0.967) TCGA-NC-A5HL-01 1 176734921 176734921 A T PAPPA2 Missense_Mutation p.Q1424L 0.46 deleterious(0.03) benign(0.081) TCGA-NC-A5HL-01 1 182544484 182544484 T A RNASEL 3'UTR 0.48 TCGA-NC-A5HL-01 1 186062363 186062363 G A HMCN1 Missense_Mutation p.D3329N 0.17 probably_damaging(0.998) TCGA-NC-A5HL-01 1 202910736 202910736 G A ADIPOR1 Silent p.L365L 0.56 TCGA-NC-A5HL-01 1 213445959 213445959 G T RPS6KC1 Missense_Mutation p.W1061C 0.30 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HL-01 1 226259069 226259069 T A H3F3A Nonsense_Mutation p.Y100* 0.26 TCGA-NC-A5HL-01 1 228596070 228596070 C T TRIM17 Silent p.L422L 0.09 TCGA-NC-A5HL-01 1 230845869 230845869 T C AGT Missense_Mutation p.E243G 0.18 deleterious(0.01) benign(0.032) TCGA-NC-A5HL-01 1 231337128 231337128 G A TRIM67 Missense_Mutation p.V467I 0.15 deleterious(0.01) probably_damaging(0.972) TCGA-NC-A5HL-01 1 233518417 233518417 G C MLK4 Missense_Mutation p.R1024P 0.24 tolerated(0.08) benign(0.011) TCGA-NC-A5HL-01 1 236923068 236923068 G C ACTN2 Silent p.L782L 0.18 TCGA-NC-A5HL-01 1 236925877 236925877 C T ACTN2 Silent p.Y881Y 0.11 TCGA-NC-A5HL-01 1 237813325 237813325 G T RYR2 Missense_Mutation p.R2554I 0.14 probably_damaging(0.987) TCGA-NC-A5HL-01 1 240497248 240497248 T A FMN2 Splice_Site p.X1548_splice 0.19 TCGA-NC-A5HL-01 1 245006554 245006557 TCAA - COX20 3'UTR 0.17 TCGA-NC-A5HL-01 1 248201631 248201631 G A OR2L2 Missense_Mutation p.R21K 0.13 tolerated(0.36) benign(0.002) TCGA-NC-A5HL-01 1 36945060 36945060 G C CSF3R Missense_Mutation p.A13G 0.31 deleterious(0) possibly_damaging(0.457) TCGA-NC-A5HL-01 1 44595561 44595561 C T KLF17 Silent p.P206P 0.42 TCGA-NC-A5HL-01 1 52291012 52291013 - TT NRD1 Frame_Shift_Ins p.M396Kfs*40 0.09 TCGA-NC-A5HL-01 1 57285043 57285043 C T C1orf168 5'UTR 0.23 TCGA-NC-A5HL-01 1 62626659 62626659 C T INADL 3'UTR 0.40 TCGA-NC-A5HL-01 1 70486800 70486800 T C LRRC7 Silent p.A473A 0.19 TCGA-NC-A5HL-01 1 70486801 70486801 G T LRRC7 Missense_Mutation p.G474W 0.19 deleterious(0) probably_damaging(1) TCGA-NC-A5HL-01 1 70493947 70493947 C A LRRC7 Missense_Mutation p.H592N 0.31 deleterious(0.02) possibly_damaging(0.543) TCGA-NC-A5HL-01 1 75037186 75037186 A T C1orf173 Missense_Mutation p.V1403E 0.41 tolerated(0.06) benign(0.372) TCGA-NC-A5HL-01 1 91850773 91850773 A G HFM1 Missense_Mutation p.L258S 0.28 tolerated(0.24) benign(0.025) TCGA-NC-A5HL-01 20 31805401 31805401 C G BPIFA3 Missense_Mutation p.A20G 0.30 tolerated(0.12) benign(0.433) TCGA-NC-A5HL-01 20 55803435 55803435 C T BMP7 Missense_Mutation p.R154Q 0.06 tolerated(0.07) benign(0.05) TCGA-NC-A5HL-01 20 62229157 62229157 G A GMEB2 Silent p.T138T 0.28 TCGA-NC-A5HL-01 20 8626754 8626754 G T PLCB1 Missense_Mutation p.W130C 0.25 deleterious(0) possibly_damaging(0.658) TCGA-NC-A5HL-01 21 10944685 10944685 C A TPTE Missense_Mutation p.L183F 0.12 tolerated(0.76) benign(0.004) TCGA-NC-A5HL-01 21 10996023 10996023 C T TPTE RNA 0.28 TCGA-NC-A5HL-01 21 19685369 19685369 G T TMPRSS15 Missense_Mutation p.N686K 0.30 tolerated(0.13) benign(0.022) TCGA-NC-A5HL-01 21 43519170 43519170 G A UMODL1 Missense_Mutation p.A356T 0.25 tolerated(0.3) benign(0.074) TCGA-NC-A5HL-01 22 42342497 42342497 C A CENPM Missense_Mutation p.V21L 0.22 tolerated(0.07) benign(0.3) TCGA-NC-A5HL-01 2 105859224 105859224 C T GPR45 Silent p.Y303Y 0.19 TCGA-NC-A5HL-01 2 10918732 10918732 G A ATP6V1C2 Missense_Mutation p.S333N 0.17 deleterious(0.04) possibly_damaging(0.72) TCGA-NC-A5HL-01 2 116572527 116572527 G T DPP10 Missense_Mutation p.G624V 0.15 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HL-01 2 139307786 139307786 G T SPOPL 5'UTR 0.30 TCGA-NC-A5HL-01 2 144525584 144525584 T A ARHGAP15 Missense_Mutation p.L424H 0.28 deleterious(0.01) probably_damaging(0.991) TCGA-NC-A5HL-01 2 153551125 153551125 C T PRPF40A Missense_Mutation p.M76I 0.26 tolerated(0.14) benign(0.091) TCGA-NC-A5HL-01 2 164467619 164467619 G A FIGN Silent p.N241N 0.17 TCGA-NC-A5HL-01 2 164467692 164467692 G C FIGN Missense_Mutation p.S217C 0.08 deleterious(0) benign(0.238) TCGA-NC-A5HL-01 2 1668752 1668752 G T PXDN Silent p.P462P 0.25 TCGA-NC-A5HL-01 2 167760010 167760010 G A XIRP2 Silent p.K6K 0.19 TCGA-NC-A5HL-01 2 171238594 171238594 A C MYO3B Missense_Mutation p.D347A 0.36 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HL-01 2 177034103 177034103 T C HOXD3 Silent p.N87N 0.26 TCGA-NC-A5HL-01 2 179452326 179452326 G T TTN Missense_Mutation p.T21237N 0.21 TCGA-NC-A5HL-01 2 179529408 179529408 T C TTN Missense_Mutation p.R12059G 0.16 TCGA-NC-A5HL-01 2 180851489 180851489 C G CWC22 Missense_Mutation p.D47H 0.20 deleterious(0) possibly_damaging(0.479) TCGA-NC-A5HL-01 2 192011470 192011470 T A STAT4 Missense_Mutation p.N48Y 0.37 tolerated(0.06) benign(0.12) TCGA-NC-A5HL-01 2 201685998 201685998 T C BZW1 Missense_Mutation p.F432L 0.09 tolerated(0.18) benign(0.282) TCGA-NC-A5HL-01 2 207509057 207509057 T A AC010731.4 RNA 0.22 TCGA-NC-A5HL-01 2 217280009 217280009 A T SMARCAL1 Silent p.T194T 0.27 TCGA-NC-A5HL-01 2 230272032 230272032 A T DNER Missense_Mutation p.C547S 0.21 deleterious(0) probably_damaging(1) TCGA-NC-A5HL-01 2 232319857 232319857 G T NCL 3'UTR 0.44 TCGA-NC-A5HL-01 2 232319859 232319859 G T NCL 3'UTR 0.44 TCGA-NC-A5HL-01 2 234681129 234681129 G C UGT1A4 Missense_Mutation p.C510S 0.56 tolerated(0.22) benign(0.008) TCGA-NC-A5HL-01 2 26699845 26699845 G A OTOF Missense_Mutation p.R864C 0.23 deleterious(0) probably_damaging(0.937) TCGA-NC-A5HL-01 2 71046916 71046916 A G CLEC4F Missense_Mutation p.F57L 0.35 tolerated(0.12) benign(0.026) TCGA-NC-A5HL-01 2 71615812 71615812 G T ZNF638 Intron 0.11 TCGA-NC-A5HL-01 2 74710561 74710561 C T TTC31 Intron 0.13 TCGA-NC-A5HL-01 2 85892783 85892783 G T SFTPB Silent p.L188L 0.38 TCGA-NC-A5HL-01 2 98409206 98409206 G A TMEM131 Missense_Mutation p.L1263F 0.41 tolerated_low_confidence(0.35) benign(0.007) TCGA-NC-A5HL-01 2 99013581 99013581 G A CNGA3 Missense_Mutation p.E650K 0.25 deleterious(0.01) benign(0.06) TCGA-NC-A5HL-01 3 108788600 108788600 G T MORC1 Missense_Mutation p.P232T 0.20 deleterious(0.03) benign(0.141) TCGA-NC-A5HL-01 3 121822576 121822576 C A CD86 Silent p.T94T 0.32 TCGA-NC-A5HL-01 3 135720449 135720449 A G PPP2R3A Missense_Mutation p.T37A 0.31 tolerated_low_confidence(1) probably_damaging(0.97) TCGA-NC-A5HL-01 3 138291810 138291810 T A CEP70 Intron 0.07 TCGA-NC-A5HL-01 3 139280079 139280079 C T NMNAT3 Missense_Mutation p.E141K 0.06 deleterious(0.03) benign(0.084) TCGA-NC-A5HL-01 3 140866062 140866062 G A SPSB4 Missense_Mutation p.S258N 0.05 tolerated(0.57) benign(0.003) TCGA-NC-A5HL-01 3 157820673 157820673 A G SHOX2 Missense_Mutation p.S141P 0.07 tolerated(0.06) possibly_damaging(0.786) TCGA-NC-A5HL-01 3 164773076 164773076 A G SI Missense_Mutation p.V473A 0.26 tolerated(0.23) benign(0.184) TCGA-NC-A5HL-01 3 167189627 167189627 A C SERPINI2 5'UTR 0.05 TCGA-NC-A5HL-01 3 169664451 169664451 A T RP11-379K17.4 RNA 0.13 TCGA-NC-A5HL-01 3 179424775 179424775 G T USP13 Missense_Mutation p.Q177H 0.11 tolerated(0.06) possibly_damaging(0.88) TCGA-NC-A5HL-01 3 183516775 183516775 A G YEATS2 Missense_Mutation p.K1108R 0.14 tolerated(0.11) benign(0.032) TCGA-NC-A5HL-01 3 3194227 3194227 C G CRBN Missense_Mutation p.G354A 0.13 deleterious(0) probably_damaging(0.991) TCGA-NC-A5HL-01 3 38519679 38519679 G T ACVR2B Missense_Mutation p.A140S 0.47 deleterious(0.04) benign(0.028) TCGA-NC-A5HL-01 3 38519939 38519939 G T ACVR2B Missense_Mutation p.G199V 0.33 deleterious(0) probably_damaging(1) TCGA-NC-A5HL-01 3 57875726 57875726 C G SLMAP Intron 0.19 TCGA-NC-A5HL-01 3 57875728 57875728 C T SLMAP Intron 0.20 TCGA-NC-A5HL-01 3 95374301 95374301 G T MTHFD2P1 RNA 0.15 TCGA-NC-A5HL-01 4 125591498 125591498 T G ANKRD50 Missense_Mutation p.E978D 0.25 tolerated(0.13) benign(0.118) TCGA-NC-A5HL-01 4 126355579 126355579 A T FAT4 Missense_Mutation p.R2400W 0.17 possibly_damaging(0.886) TCGA-NC-A5HL-01 4 134111365 134111365 C T PCDH10 3'UTR 0.27 TCGA-NC-A5HL-01 4 144467201 144467201 G T SMARCA5 Splice_Site p.X840_splice 0.20 TCGA-NC-A5HL-01 4 167713365 167713365 C A SPOCK3 Missense_Mutation p.S225I 0.31 tolerated(0.12) benign(0.008) TCGA-NC-A5HL-01 4 187004351 187004351 C A TLR3 Missense_Mutation p.P504H 0.17 tolerated(0.07) benign(0.131) TCGA-NC-A5HL-01 4 48114326 48114326 C T TXK Silent p.L126L 0.33 TCGA-NC-A5HL-01 4 56329919 56329919 T C CLOCK Silent p.S164S 0.45 TCGA-NC-A5HL-01 5 101811423 101811423 C A SLCO6A1 Nonsense_Mutation p.E293* 0.31 TCGA-NC-A5HL-01 5 140501841 140501841 G C PCDHB4 Missense_Mutation p.E87D 0.45 deleterious_low_confidence(0.02) benign(0.158) TCGA-NC-A5HL-01 5 140531316 140531316 A G PCDHB6 Missense_Mutation p.D493G 0.42 deleterious(0.01) possibly_damaging(0.495) TCGA-NC-A5HL-01 5 153144158 153144158 C T GRIA1 Missense_Mutation p.T673M 0.44 deleterious(0.02) probably_damaging(0.982) TCGA-NC-A5HL-01 5 170395364 170395364 C T RANBP17 Missense_Mutation p.L565F 0.29 deleterious(0.01) possibly_damaging(0.656) TCGA-NC-A5HL-01 5 33561251 33561251 T C ADAMTS12 Missense_Mutation p.R1336G 0.15 deleterious(0) probably_damaging(1) TCGA-NC-A5HL-01 5 3599506 3599506 G A IRX1 Silent p.E148E 0.37 TCGA-NC-A5HL-01 5 68522189 68522189 A G MRPS36 Missense_Mutation p.I23V 0.42 deleterious(0.01) benign(0.442) TCGA-NC-A5HL-01 5 87524294 87524294 C G TMEM161B Silent p.G53G 0.19 TCGA-NC-A5HL-01 6 101109743 101109743 G A ASCC3 Missense_Mutation p.T881I 0.08 deleterious(0) probably_damaging(0.926) TCGA-NC-A5HL-01 6 24146112 24146112 G A NRSN1 Missense_Mutation p.E176K 0.46 tolerated(0.16) benign(0.094) TCGA-NC-A5HL-01 6 25770336 25770336 C A SLC17A4 Silent p.I113I 0.25 TCGA-NC-A5HL-01 6 44148514 44148514 G A CAPN11 Silent p.Q592Q 0.32 TCGA-NC-A5HL-01 6 50803875 50803875 G C TFAP2B Missense_Mutation p.G235R 0.07 deleterious(0.01) probably_damaging(0.989) TCGA-NC-A5HL-01 6 71665548 71665548 G T B3GAT2 Missense_Mutation p.F195L 0.30 deleterious(0.03) probably_damaging(0.996) TCGA-NC-A5HL-01 6 76623936 76623936 G C MYO6 Missense_Mutation p.G1199A 0.10 deleterious(0) probably_damaging(1) TCGA-NC-A5HL-01 6 87970960 87970960 A C ZNF292 Missense_Mutation p.N2538T 0.09 tolerated(0.35) benign(0.006) TCGA-NC-A5HL-01 6 88317487 88317487 G T ORC3 Missense_Mutation p.R175I 0.38 deleterious(0) benign(0.272) TCGA-NC-A5HL-01 6 99323439 99323439 C A FBXL4 Silent p.L518L 0.12 TCGA-NC-A5HL-01 7 111368582 111368582 G C DOCK4 Silent p.P1883P 0.21 TCGA-NC-A5HL-01 7 123302403 123302403 A G LMOD2 Missense_Mutation p.S255G 0.30 tolerated(0.12) benign(0) TCGA-NC-A5HL-01 7 126173121 126173121 C T GRM8 Missense_Mutation p.G772D 0.32 tolerated(0.68) probably_damaging(0.914) TCGA-NC-A5HL-01 7 128412661 128412661 G T OPN1SW Missense_Mutation p.S327Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HL-01 7 136700581 136700581 A T CHRM2 Silent p.T323T 0.32 TCGA-NC-A5HL-01 7 142962320 142962320 G A GSTK1 Silent p.P173P 0.44 TCGA-NC-A5HL-01 7 155100221 155100221 C A INSIG1 3'UTR 0.55 TCGA-NC-A5HL-01 7 158457375 158457375 C T NCAPG2 Missense_Mutation p.R516Q 0.07 deleterious(0.02) benign(0.059) TCGA-NC-A5HL-01 7 2686796 2686796 T G TTYH3 Missense_Mutation p.F105C 0.40 deleterious(0) probably_damaging(0.972) TCGA-NC-A5HL-01 7 48559867 48559867 C T ABCA13 Silent p.H4676H 0.45 TCGA-NC-A5HL-01 7 71275458 71275458 G A CALN1 Missense_Mutation p.T174I 0.63 deleterious(0) possibly_damaging(0.776) TCGA-NC-A5HL-01 7 7273991 7273991 G T C1GALT1 Missense_Mutation p.C14F 0.62 tolerated(0.73) benign(0.002) TCGA-NC-A5HL-01 7 88965523 88965523 C A ZNF804B Missense_Mutation p.A1076D 0.33 deleterious(0) probably_damaging(0.976) TCGA-NC-A5HL-01 7 92734352 92734352 C A SAMD9 Silent p.T353T 0.14 TCGA-NC-A5HL-01 8 139164103 139164103 C T FAM135B Missense_Mutation p.G872D 0.13 tolerated(0.16) benign(0.003) TCGA-NC-A5HL-01 8 144998441 144998441 G T PLEC Missense_Mutation p.Q2023K 0.21 unknown(0) TCGA-NC-A5HL-01 8 38050287 38050287 C T BAG4 Missense_Mutation p.P118S 0.14 tolerated(0.05) benign(0.035) TCGA-NC-A5HL-01 8 55542679 55542679 A T RP1 Silent p.S2079S 0.19 TCGA-NC-A5HL-01 8 623533 623533 G A ERICH1 Silent p.D273D 0.28 TCGA-NC-A5HL-01 8 69136845 69136845 C G PREX2 Missense_Mutation p.P1587A 0.10 deleterious(0.01) benign(0.197) TCGA-NC-A5HL-01 8 75761415 75761415 G T PI15 Missense_Mutation p.S235I 0.31 deleterious(0.03) probably_damaging(0.942) TCGA-NC-A5HL-01 8 80567228 80567228 G A STMN2 Silent p.L137L 0.16 TCGA-NC-A5HL-01 8 85097147 85097147 C G RALYL 5'UTR 0.35 TCGA-NC-A5HL-01 8 89180138 89180138 C A MMP16 Missense_Mutation p.D157Y 0.41 deleterious(0.04) probably_damaging(0.991) TCGA-NC-A5HL-01 9 112899316 112899316 G A PALM2-AKAP2 Missense_Mutation p.E498K 0.29 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HL-01 9 116136130 116136130 C A HDHD3 Missense_Mutation p.D169Y 0.35 deleterious(0) probably_damaging(0.985) TCGA-NC-A5HL-01 9 130474566 130474566 G T C9orf117 Missense_Mutation p.V359F 0.14 tolerated(0.2) possibly_damaging(0.838) TCGA-NC-A5HL-01 9 27157948 27157948 G C TEK Missense_Mutation p.G58R 0.07 tolerated(0.32) probably_damaging(0.993) TCGA-NC-A5HL-01 9 27212776 27212776 C A TEK Missense_Mutation p.L920M 0.61 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HL-01 9 33927813 33927813 C T UBAP2 Missense_Mutation p.A785T 0.22 tolerated(0.36) unknown(0) TCGA-NC-A5HL-01 9 5233806 5233806 C T INSL4 Missense_Mutation p.R117C 0.15 tolerated_low_confidence(0.19) benign(0.09) TCGA-NC-A5HL-01 9 90535837 90535837 T A SPATA31C1 RNA 0.33 TCGA-NC-A5HL-01 9 96294474 96294474 C T FAM120A Missense_Mutation p.A591V 0.22 tolerated(0.12) benign(0.039) TCGA-NC-A5HL-01 X 103268012 103268012 G C H2BFWT Missense_Mutation p.S74C 0.50 tolerated(0.14) benign(0.004) TCGA-NC-A5HL-01 X 114384418 114384418 C T LRCH2 Missense_Mutation p.S556N 0.54 tolerated(0.39) benign(0.004) TCGA-NC-A5HL-01 X 122748030 122748030 T C THOC2 Missense_Mutation p.N1441S 0.57 tolerated(0.16) benign(0.118) TCGA-NC-A5HL-01 X 37985984 37985984 A G SYTL5 3'UTR 0.40 TCGA-NC-A5HL-01 X 55039916 55039916 T G ALAS2 Intron 0.38 TCGA-NC-A5HL-01 X 64749134 64749134 T A LAS1L Missense_Mutation p.R268S 0.50 tolerated(0.08) benign(0.04) TCGA-NC-A5HL-01 X 79978076 79978076 C T BRWD3 Missense_Mutation p.G621R 0.67 deleterious(0.01) probably_damaging(0.923) TCGA-NC-A5HL-01 X 86877261 86877261 T C KLHL4 Silent p.A325A 0.35 TCGA-NC-A5HM-01 10 101656124 101656124 C T DNMBP Missense_Mutation p.S984N 0.08 deleterious(0) probably_damaging(0.971) TCGA-NC-A5HM-01 10 105215222 105215222 G A CALHM1 Missense_Mutation p.P280S 0.50 tolerated(0.73) benign(0) TCGA-NC-A5HM-01 10 113928625 113928625 C G GPAM Missense_Mutation p.A294P 0.05 deleterious(0.01) probably_damaging(0.91) TCGA-NC-A5HM-01 10 16911702 16911702 G A CUBN Silent p.L3129L 0.04 TCGA-NC-A5HM-01 10 16990496 16990496 C G CUBN Silent p.T1730T 0.09 TCGA-NC-A5HM-01 10 28905194 28905194 G C WAC Missense_Mutation p.R550P 0.18 tolerated(0.24) probably_damaging(0.955) TCGA-NC-A5HM-01 10 31810082 31810082 A G ZEB1 Missense_Mutation p.S608G 0.40 tolerated(0.13) possibly_damaging(0.641) TCGA-NC-A5HM-01 10 37422850 37422850 C A ANKRD30A Silent p.A152A 0.16 TCGA-NC-A5HM-01 10 37506696 37506696 G T ANKRD30A Nonsense_Mutation p.G997* 0.37 TCGA-NC-A5HM-01 10 42928802 42928802 C A CCNYL2 Intron 0.37 TCGA-NC-A5HM-01 10 42928804 42928804 T A CCNYL2 Splice_Site 0.36 TCGA-NC-A5HM-01 10 52005101 52005101 C T ASAH2 Missense_Mutation p.A81T 0.06 tolerated_low_confidence(0.62) benign(0.001) TCGA-NC-A5HM-01 10 53458170 53458170 C A CSTF2T Missense_Mutation p.M380I 0.52 tolerated(0.07) benign(0.016) TCGA-NC-A5HM-01 10 84738801 84738801 G C NRG3 Missense_Mutation p.G503A 0.09 deleterious(0.03) benign(0.297) TCGA-NC-A5HM-01 10 97917430 97917430 G C ZNF518A RNA 0.06 TCGA-NC-A5HM-01 11 104971393 104971393 C A CARD17 Nonsense_Mutation p.E41* 0.03 TCGA-NC-A5HM-01 11 107299781 107299782 AA - CWF19L2 Frame_Shift_Del p.A394Ifs*9 0.25 TCGA-NC-A5HM-01 11 124748237 124748237 G T ROBO3 Missense_Mutation p.Q1075H 0.21 deleterious(0.01) benign(0.004) TCGA-NC-A5HM-01 11 125831809 125831809 C A CDON Missense_Mutation p.L1147F 0.25 deleterious(0.05) probably_damaging(0.918) TCGA-NC-A5HM-01 11 133714458 133714458 C G SPATA19 Missense_Mutation p.M71I 0.23 deleterious(0.03) benign(0.043) TCGA-NC-A5HM-01 11 14512116 14512116 C A COPB1 Missense_Mutation p.D201Y 0.14 deleterious(0.03) probably_damaging(0.998) TCGA-NC-A5HM-01 11 22399062 22399062 G A SLC17A6 Missense_Mutation p.E509K 0.08 tolerated(0.17) benign(0.074) TCGA-NC-A5HM-01 11 48158615 48158615 G T PTPRJ Missense_Mutation p.W645L 0.13 deleterious(0.02) probably_damaging(1) TCGA-NC-A5HM-01 11 49170250 49170250 G T FOLH1 Silent p.L668L 0.39 TCGA-NC-A5HM-01 11 55032519 55032519 C A TRIM48 Missense_Mutation p.P63Q 0.37 tolerated(1) benign(0.01) TCGA-NC-A5HM-01 11 55658774 55658774 A G TRIM51 Missense_Mutation p.Y342C 0.18 deleterious(0) probably_damaging(1) TCGA-NC-A5HM-01 11 55861304 55861304 A G OR8I2 Missense_Mutation p.N174S 0.40 tolerated(0.12) benign(0.036) TCGA-NC-A5HM-01 11 55861327 55861327 G T OR8I2 Missense_Mutation p.A182S 0.39 deleterious(0.03) possibly_damaging(0.861) TCGA-NC-A5HM-01 11 55927140 55927140 G T OR8K5 Nonsense_Mutation p.Y218* 0.34 TCGA-NC-A5HM-01 11 58207068 58207068 G A OR5B12 Missense_Mutation p.S186L 0.24 deleterious_low_confidence(0) possibly_damaging(0.707) TCGA-NC-A5HM-01 11 59245381 59245381 T A OR4D10 Missense_Mutation p.I160N 0.26 deleterious(0) probably_damaging(0.981) TCGA-NC-A5HM-01 11 61633251 61633251 G T FADS2 3'UTR 0.36 TCGA-NC-A5HM-01 11 62288116 62288116 C T AHNAK Silent p.P4591P 0.37 TCGA-NC-A5HM-01 11 6806419 6806419 A G OR2AG1 Missense_Mutation p.M51V 0.20 tolerated(0.86) benign(0.001) TCGA-NC-A5HM-01 11 77413607 77413607 T G RSF1 Intron 0.38 TCGA-NC-A5HM-01 11 88300459 88300459 T C GRM5 Missense_Mutation p.K798E 0.36 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HM-01 12 105443781 105443781 C G ALDH1L2 Missense_Mutation p.D531H 0.41 deleterious(0) probably_damaging(0.994) TCGA-NC-A5HM-01 12 107126786 107126786 C A RFX4 Missense_Mutation p.A528D 0.24 deleterious(0.04) benign(0.103) TCGA-NC-A5HM-01 12 111311665 111311665 A G CCDC63 Missense_Mutation p.K130R 0.12 deleterious(0.03) probably_damaging(0.928) TCGA-NC-A5HM-01 12 117705904 117705904 G C NOS1 Missense_Mutation p.L629V 0.24 deleterious(0) possibly_damaging(0.667) TCGA-NC-A5HM-01 12 120565467 120565467 G A GCN1L1 3'UTR 0.20 TCGA-NC-A5HM-01 12 124118170 124118170 G A EIF2B1 5'UTR 0.45 TCGA-NC-A5HM-01 12 21450389 21450389 A T SLCO1A2 Missense_Mutation p.Y342N 0.33 deleterious(0) probably_damaging(0.995) TCGA-NC-A5HM-01 12 40010957 40010957 T G ABCD2 Missense_Mutation p.Q318P 0.34 tolerated(0.2) possibly_damaging(0.637) TCGA-NC-A5HM-01 12 41323751 41323751 C A CNTN1 Missense_Mutation p.S217Y 0.23 tolerated(1) probably_damaging(0.978) TCGA-NC-A5HM-01 12 49087789 49087789 T A CCNT1 Missense_Mutation p.Q403L 0.36 deleterious(0.03) probably_damaging(0.933) TCGA-NC-A5HM-01 12 50186578 50186578 G A NCKAP5L Missense_Mutation p.R1178W 0.22 deleterious(0) probably_damaging(1) TCGA-NC-A5HM-01 12 52713050 52713050 A C KRT83 Silent p.A161A 0.34 TCGA-NC-A5HM-01 12 52713051 52713051 G T KRT83 Missense_Mutation p.A161D 0.34 tolerated(0.18) benign(0.001) TCGA-NC-A5HM-01 12 55759006 55759006 A T OR6C75 Missense_Mutation p.T38S 0.25 tolerated_low_confidence(0.09) benign(0.006) TCGA-NC-A5HM-01 12 7061312 7061312 C T PTPN6 Silent p.L100L 0.32 TCGA-NC-A5HM-01 12 7527347 7527347 T A CD163L1 Nonsense_Mutation p.K1034* 0.33 TCGA-NC-A5HM-01 12 8666254 8666254 G T CLEC4D 5'UTR 0.29 TCGA-NC-A5HM-01 12 9301581 9301581 T A PZP Missense_Mutation p.H1479L 0.27 tolerated(0.11) benign(0) TCGA-NC-A5HM-01 13 26133888 26133888 C A ATP8A2 Missense_Mutation p.S461Y 0.57 tolerated(0.13) possibly_damaging(0.637) TCGA-NC-A5HM-01 13 28891693 28891693 A - FLT1 Frame_Shift_Del p.C1110Afs*4 0.35 TCGA-NC-A5HM-01 13 29608197 29608197 C A MTUS2 Missense_Mutation p.A804E 0.61 deleterious(0.01) probably_damaging(0.917) TCGA-NC-A5HM-01 13 41943363 41943363 G T NAA16 Nonsense_Mutation p.E631* 0.57 TCGA-NC-A5HM-01 13 79175810 79175810 C A POU4F1 Nonsense_Mutation p.E334* 0.55 TCGA-NC-A5HM-01 14 19563645 19563645 G T POTEG Intron 0.25 TCGA-NC-A5HM-01 14 20528830 20528830 C A OR4L1 Silent p.T209T 0.57 TCGA-NC-A5HM-01 14 20612759 20612759 C A OR4N5 Missense_Mutation p.L289I 0.63 deleterious(0) possibly_damaging(0.483) TCGA-NC-A5HM-01 14 24458227 24458227 T A DHRS4L2 Missense_Mutation p.M24K 0.27 tolerated(0.42) benign(0.138) TCGA-NC-A5HM-01 14 24544774 24544774 G C CPNE6 Missense_Mutation p.G280R 0.41 deleterious(0.01) probably_damaging(0.993) TCGA-NC-A5HM-01 14 24737109 24737109 C G RABGGTA Missense_Mutation p.E401D 0.53 deleterious(0.01) possibly_damaging(0.66) TCGA-NC-A5HM-01 14 24737323 24737325 CTC TT RABGGTA Frame_Shift_Del p.E380Kfs*12 0.32 TCGA-NC-A5HM-01 14 24737364 24737364 C G RABGGTA Missense_Mutation p.E367Q 0.42 deleterious(0.03) possibly_damaging(0.679) TCGA-NC-A5HM-01 14 24737386 24737386 C G RABGGTA Missense_Mutation p.E359D 0.44 tolerated(0.32) benign(0.001) TCGA-NC-A5HM-01 14 45403649 45403649 C T KLHL28 Missense_Mutation p.G338S 0.25 deleterious(0.01) probably_damaging(0.981) TCGA-NC-A5HM-01 14 56233164 56233164 G A RP11-813I20.2 Intron 0.35 TCGA-NC-A5HM-01 14 61788963 61788963 C A PRKCH Missense_Mutation p.S48R 0.40 tolerated(0.18) benign(0.306) TCGA-NC-A5HM-01 14 65031515 65031515 G T PPP1R36 Missense_Mutation p.A77S 0.39 tolerated(0.45) benign(0.129) TCGA-NC-A5HM-01 14 75513735 75513735 G C MLH3 Missense_Mutation p.S875C 0.33 deleterious(0.01) probably_damaging(0.954) TCGA-NC-A5HM-01 14 92959873 92959873 C A SLC24A4 Nonsense_Mutation p.Y590* 0.34 TCGA-NC-A5HM-01 15 20645810 20645810 G A HERC2P3 RNA 0.42 TCGA-NC-A5HM-01 15 22332637 22332637 G T RP11-69H14.6 RNA 0.22 TCGA-NC-A5HM-01 15 25492550 25492550 C T SNORD115-42 RNA 0.39 TCGA-NC-A5HM-01 15 27193177 27193177 G C GABRA5 Missense_Mutation p.G396R 0.48 tolerated(0.3) possibly_damaging(0.588) TCGA-NC-A5HM-01 15 28263575 28263575 C A OCA2 Missense_Mutation p.A259S 0.15 tolerated(0.68) benign(0.002) TCGA-NC-A5HM-01 15 28356792 28356792 G A HERC2 3'UTR 0.36 TCGA-NC-A5HM-01 15 31862241 31862241 C A OTUD7A Missense_Mutation p.R104M 0.41 deleterious(0) benign(0.39) TCGA-NC-A5HM-01 15 42169384 42169384 C A SPTBN5 Missense_Mutation p.G1214V 0.31 probably_damaging(0.932) TCGA-NC-A5HM-01 15 43568649 43568649 G T TGM7 3'UTR 0.08 TCGA-NC-A5HM-01 15 44180390 44180390 C T FRMD5 Silent p.E289E 0.09 TCGA-NC-A5HM-01 15 48434404 48434404 T C SLC24A5 Silent p.F453F 0.27 TCGA-NC-A5HM-01 15 51276332 51276332 G C AP4E1 Missense_Mutation p.G694R 0.04 tolerated(0.05) possibly_damaging(0.594) TCGA-NC-A5HM-01 15 54306015 54306015 C T UNC13C Silent p.I305I 0.12 TCGA-NC-A5HM-01 15 65489927 65489927 G T CILP Silent p.L899L 0.09 TCGA-NC-A5HM-01 15 88423622 88423622 G T NTRK3 Missense_Mutation p.P738H 0.09 deleterious(0) probably_damaging(1) TCGA-NC-A5HM-01 15 88423623 88423623 G T NTRK3 Missense_Mutation p.P738T 0.09 deleterious(0) probably_damaging(1) TCGA-NC-A5HM-01 15 91308549 91308549 C T BLM Nonsense_Mutation p.Q700* 0.11 TCGA-NC-A5HM-01 15 99901668 99901668 G T LRRC28 Nonsense_Mutation p.E275* 0.11 TCGA-NC-A5HM-01 16 1004456 1004456 C T LMF1 Missense_Mutation p.G135D 0.11 tolerated(0.11) possibly_damaging(0.638) TCGA-NC-A5HM-01 16 1270723 1270723 C T CACNA1H Missense_Mutation p.P2264L 0.43 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-NC-A5HM-01 16 21629382 21629382 A G METTL9 Missense_Mutation p.K185E 0.19 tolerated(0.28) benign(0.077) TCGA-NC-A5HM-01 16 28509196 28509196 G T APOBR Missense_Mutation p.G945V 0.21 deleterious(0) probably_damaging(0.972) TCGA-NC-A5HM-01 16 3658446 3658446 T C SLX4 Missense_Mutation p.R174G 0.42 tolerated(0.17) benign(0.008) TCGA-NC-A5HM-01 16 71061592 71061592 G A HYDIN Silent p.P985P 0.26 TCGA-NC-A5HM-01 16 84691204 84691204 A T KLHL36 Missense_Mutation p.E264V 0.27 tolerated(1) possibly_damaging(0.701) TCGA-NC-A5HM-01 16 87678060 87678060 C T JPH3 Silent p.R193R 0.07 TCGA-NC-A5HM-01 16 88705678 88705678 C A IL17C Missense_Mutation p.A99E 0.29 deleterious(0) possibly_damaging(0.835) TCGA-NC-A5HM-01 17 10398271 10398271 G C MYH1 Missense_Mutation p.Q1815E 0.10 deleterious(0.04) benign(0.03) TCGA-NC-A5HM-01 17 18138263 18138263 G T LLGL1 Missense_Mutation p.R339L 0.56 deleterious(0) probably_damaging(0.988) TCGA-NC-A5HM-01 17 33457345 33457345 C A FNDC8 Nonsense_Mutation p.Y289* 0.48 TCGA-NC-A5HM-01 17 33585740 33585740 T G SLFN5 Missense_Mutation p.F11V 0.63 deleterious(0.01) possibly_damaging(0.719) TCGA-NC-A5HM-01 17 34136540 34136540 G T TAF15 5'UTR 0.47 TCGA-NC-A5HM-01 17 49353234 49353234 A G UTP18 Missense_Mutation p.N240S 0.75 tolerated(0.38) benign(0.002) TCGA-NC-A5HM-01 17 58525053 58525053 C T APPBP2 Silent p.R549R 0.40 TCGA-NC-A5HM-01 17 6553321 6553321 C T MED31 Missense_Mutation p.E62K 0.05 tolerated(0.09) benign(0.081) TCGA-NC-A5HM-01 17 67016651 67016651 C G ABCA9 Missense_Mutation p.L826F 0.27 tolerated(0.07) benign(0.021) TCGA-NC-A5HM-01 17 7577509 7577509 C T TP53 Missense_Mutation p.E258K 0.53 deleterious(0) probably_damaging(0.995) TCGA-NC-A5HM-01 17 79865713 79865713 C G PCYT2 Missense_Mutation p.G143A 0.22 deleterious(0) probably_damaging(0.986) TCGA-NC-A5HM-01 18 2925364 2925364 G A LPIN2 Missense_Mutation p.P599L 0.17 tolerated(0.44) benign(0) TCGA-NC-A5HM-01 18 71797657 71797657 G C FBXO15 Missense_Mutation p.A190G 0.04 deleterious(0) possibly_damaging(0.713) TCGA-NC-A5HM-01 18 72775247 72775247 C G ZNF407 Missense_Mutation p.A1857G 0.19 tolerated(0.32) benign(0.37) TCGA-NC-A5HM-01 18 72913749 72913749 C T ZADH2 Missense_Mutation p.M252I 0.38 tolerated(0.11) benign(0.072) TCGA-NC-A5HM-01 19 12060634 12060634 A G ZNF700 Missense_Mutation p.K599E 0.48 deleterious(0) benign(0.121) TCGA-NC-A5HM-01 19 14040228 14040228 G A CC2D1A Silent p.A852A 0.10 TCGA-NC-A5HM-01 19 15299880 15299880 T G NOTCH3 Missense_Mutation p.N433T 0.59 deleterious(0) probably_damaging(1) TCGA-NC-A5HM-01 19 15728845 15728845 C T AD000091.2 5'Flank 0.41 TCGA-NC-A5HM-01 19 36207497 36207497 G A ZBTB32 Missense_Mutation p.G436D 0.06 deleterious(0.04) probably_damaging(0.982) TCGA-NC-A5HM-01 19 38998447 38998449 AGG - RYR1 In_Frame_Del p.E2972del 0.30 TCGA-NC-A5HM-01 19 41009894 41009894 C A SPTBN4 Missense_Mutation p.A507E 0.35 tolerated(0.96) benign(0.378) TCGA-NC-A5HM-01 19 41811731 41811731 G T HNRNPUL1 Missense_Mutation p.A805S 0.25 tolerated_low_confidence(0.16) unknown(0) TCGA-NC-A5HM-01 19 41898865 41898865 C G EXOSC5 Missense_Mutation p.G57R 0.19 deleterious(0) probably_damaging(1) TCGA-NC-A5HM-01 19 46347405 46347405 C A SYMPK Missense_Mutation p.V244L 0.39 tolerated(0.09) benign(0.002) TCGA-NC-A5HM-01 19 46347406 46347406 C T SYMPK Missense_Mutation p.M243I 0.39 tolerated(0.53) benign(0.079) TCGA-NC-A5HM-01 19 48805984 48805984 C A CCDC114 Missense_Mutation p.D366Y 0.32 deleterious(0.02) probably_damaging(0.916) TCGA-NC-A5HM-01 19 50925739 50925739 G A SPIB Missense_Mutation p.G21S 0.11 tolerated(0.4) benign(0.088) TCGA-NC-A5HM-01 19 50925740 50925740 G T SPIB Missense_Mutation p.G21V 0.14 tolerated(0.36) possibly_damaging(0.787) TCGA-NC-A5HM-01 19 53209711 53209711 C A ZNF611 Missense_Mutation p.R199S 0.34 tolerated(1) benign(0.01) TCGA-NC-A5HM-01 19 53209712 53209712 C G ZNF611 Missense_Mutation p.R199T 0.34 tolerated(0.5) benign(0.162) TCGA-NC-A5HM-01 19 55361959 55361959 G A KIR3DL2 Missense_Mutation p.C10Y 0.72 deleterious(0) possibly_damaging(0.518) TCGA-NC-A5HM-01 19 55686249 55686249 C T SYT5 Splice_Site p.X276_splice 0.12 TCGA-NC-A5HM-01 19 56416420 56416420 T A NLRP13 Missense_Mutation p.S836C 0.26 deleterious(0.01) probably_damaging(0.985) TCGA-NC-A5HM-01 19 57328304 57328304 C T PEG3 Silent p.G502G 0.21 TCGA-NC-A5HM-01 19 6534985 6534985 G A TNFSF9 Missense_Mutation p.A225T 0.22 tolerated(0.44) benign(0.205) TCGA-NC-A5HM-01 19 9061641 9061641 G T MUC16 Missense_Mutation p.T8602K 0.23 unknown(0) TCGA-NC-A5HM-01 19 9083644 9083644 G A MUC16 Missense_Mutation p.P2724L 0.32 unknown(0) TCGA-NC-A5HM-01 1 11184589 11184589 C G MTOR Missense_Mutation p.A2210P 0.47 tolerated(0.25) possibly_damaging(0.611) TCGA-NC-A5HM-01 1 142713336 142713336 C G RP11-417J8.6 RNA 0.46 TCGA-NC-A5HM-01 1 144879070 144879070 C A PDE4DIP Missense_Mutation p.K1460N 0.09 tolerated(0.11) probably_damaging(0.986) TCGA-NC-A5HM-01 1 144879071 144879071 T A PDE4DIP Missense_Mutation p.K1460M 0.10 tolerated(0.05) probably_damaging(0.993) TCGA-NC-A5HM-01 1 145416674 145416674 T C HFE2 Missense_Mutation p.I340T 0.40 tolerated(0.17) benign(0.009) TCGA-NC-A5HM-01 1 153914432 153914432 C A DENND4B Missense_Mutation p.R323L 0.42 deleterious(0) probably_damaging(0.924) TCGA-NC-A5HM-01 1 153914433 153914433 G A DENND4B Missense_Mutation p.R323C 0.43 deleterious(0) probably_damaging(0.986) TCGA-NC-A5HM-01 1 155896897 155896897 T A KIAA0907 Missense_Mutation p.D172V 0.24 deleterious(0) possibly_damaging(0.639) TCGA-NC-A5HM-01 1 158368921 158368921 G T OR10T2 Missense_Mutation p.N112K 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-NC-A5HM-01 1 158669860 158669860 C A OR6K2 Missense_Mutation p.V195F 0.23 tolerated(0.07) possibly_damaging(0.597) TCGA-NC-A5HM-01 1 159163260 159163260 G A CADM3 Missense_Mutation p.E178K 0.34 deleterious(0) possibly_damaging(0.669) TCGA-NC-A5HM-01 1 167096331 167096331 G C DUSP27 Missense_Mutation p.G655R 0.18 tolerated(0.16) benign(0.009) TCGA-NC-A5HM-01 1 168054797 168054797 C G GPR161 Missense_Mutation p.G541A 0.32 deleterious_low_confidence(0.01) probably_damaging(0.97) TCGA-NC-A5HM-01 1 170501271 170501271 C G GORAB 5'UTR 0.12 TCGA-NC-A5HM-01 1 172569304 172569304 G - SUCO Frame_Shift_Del p.E1006Rfs*21 0.20 TCGA-NC-A5HM-01 1 177933362 177933362 C A SEC16B Nonsense_Mutation p.E196* 0.37 TCGA-NC-A5HM-01 1 183604722 183604722 C A ARPC5 Missense_Mutation p.V25L 0.31 tolerated(0.28) benign(0.012) TCGA-NC-A5HM-01 1 184764097 184764097 C T FAM129A 3'UTR 0.28 TCGA-NC-A5HM-01 1 186326652 186326652 G C TPR Nonsense_Mutation p.S534* 0.23 TCGA-NC-A5HM-01 1 19202860 19202860 C T ALDH4A1 Silent p.V429V 0.58 TCGA-NC-A5HM-01 1 197026214 197026214 C A F13B Missense_Mutation p.G367V 0.21 tolerated(0.19) probably_damaging(0.999) TCGA-NC-A5HM-01 1 20248819 20248819 G A PLA2G2E Silent p.F86F 0.47 TCGA-NC-A5HM-01 1 207642538 207642538 G A CR2 Missense_Mutation p.G260R 0.23 deleterious(0.04) probably_damaging(0.935) TCGA-NC-A5HM-01 1 207642539 207642539 G T CR2 Missense_Mutation p.G260V 0.24 deleterious(0.01) possibly_damaging(0.905) TCGA-NC-A5HM-01 1 216246310 216246310 T C USH2A Silent p.E1926E 0.25 TCGA-NC-A5HM-01 1 216595711 216595711 C T USH2A 5'UTR 0.31 TCGA-NC-A5HM-01 1 228194828 228194828 C T WNT3A 5'UTR 0.29 TCGA-NC-A5HM-01 1 230498098 230498098 C T PGBD5 Intron 0.19 TCGA-NC-A5HM-01 1 242024004 242024004 G T EXO1 Silent p.G314G 0.34 TCGA-NC-A5HM-01 1 243319562 243319562 T C CEP170 Missense_Mutation p.Y1291C 0.44 deleterious(0) possibly_damaging(0.897) TCGA-NC-A5HM-01 1 245927355 245927355 C T SMYD3 Silent p.K391K 0.09 TCGA-NC-A5HM-01 1 248263077 248263077 C A OR2L13 Missense_Mutation p.R134S 0.23 tolerated(0.11) benign(0.106) TCGA-NC-A5HM-01 1 248308686 248308686 C T OR2M5 Silent p.P79P 0.25 TCGA-NC-A5HM-01 1 248402292 248402292 G C OR2M4 Missense_Mutation p.S21T 0.35 tolerated(0.55) benign(0.023) TCGA-NC-A5HM-01 1 248813329 248813329 T A OR2T27 Missense_Mutation p.N286I 0.34 deleterious(0.01) benign(0.32) TCGA-NC-A5HM-01 1 28071290 28071290 T C FAM76A Silent p.Y194Y 0.60 TCGA-NC-A5HM-01 1 34180279 34180279 C T CSMD2 Missense_Mutation p.C1065Y 0.45 deleterious(0) probably_damaging(1) TCGA-NC-A5HM-01 1 34285327 34285327 C A CSMD2 Missense_Mutation p.R397S 0.12 tolerated(0.07) possibly_damaging(0.629) TCGA-NC-A5HM-01 1 40546110 40546110 G A PPT1 Missense_Mutation p.R196C 0.04 deleterious(0.01) possibly_damaging(0.907) TCGA-NC-A5HM-01 1 44426614 44426614 C A IPO13 Missense_Mutation p.Q726K 0.18 tolerated(0.11) benign(0.048) TCGA-NC-A5HM-01 1 52891026 52891026 G A ZCCHC11 Missense_Mutation p.T1622I 0.28 deleterious_low_confidence(0.04) possibly_damaging(0.462) TCGA-NC-A5HM-01 1 64603178 64603178 A G ROR1 Silent p.T203T 0.42 TCGA-NC-A5HM-01 1 66036484 66036484 A T LEPR Silent p.I123I 0.51 TCGA-NC-A5HM-01 1 67154887 67154887 C T SGIP1 Missense_Mutation p.P458S 0.39 tolerated(0.08) probably_damaging(0.968) TCGA-NC-A5HM-01 1 76346953 76346953 G C MSH4 Missense_Mutation p.E602Q 0.23 tolerated(0.09) benign(0.223) TCGA-NC-A5HM-01 1 7910912 7910912 C T UTS2 Silent p.E73E 0.20 TCGA-NC-A5HM-01 1 901877 901877 G C PLEKHN1 5'UTR 0.25 TCGA-NC-A5HM-01 1 93101849 93101849 T C EVI5 Silent p.L463L 0.18 TCGA-NC-A5HM-01 20 126100 126102 AAG - DEFB126 In_Frame_Del p.K37del 0.13 TCGA-NC-A5HM-01 20 13830153 13830153 A C SEL1L2 Missense_Mutation p.L569W 0.16 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-NC-A5HM-01 20 33370149 33370149 C A NCOA6 Missense_Mutation p.D4Y 0.23 possibly_damaging(0.502) TCGA-NC-A5HM-01 20 42157376 42157376 C T L3MBTL1 Silent p.L292L 0.53 TCGA-NC-A5HM-01 20 42157377 42157377 T C L3MBTL1 Missense_Mutation p.F293L 0.53 deleterious(0) probably_damaging(1) TCGA-NC-A5HM-01 20 43057001 43057001 C A HNF4A Missense_Mutation p.H386N 0.16 tolerated(0.16) benign(0.352) TCGA-NC-A5HM-01 20 44050083 44050083 A C PIGT Missense_Mutation p.K365T 0.27 tolerated(0.93) benign(0.001) TCGA-NC-A5HM-01 20 44589307 44589307 A C ZNF335 Missense_Mutation p.L577R 0.47 deleterious(0) probably_damaging(1) TCGA-NC-A5HM-01 20 50329519 50329519 C T ATP9A Missense_Mutation p.R141Q 0.19 tolerated(0.38) benign(0.105) TCGA-NC-A5HM-01 21 11049462 11049462 C A BAGE2 RNA 0.05 TCGA-NC-A5HM-01 21 19647615 19647615 G T TMPRSS15 Missense_Mutation p.L935I 0.51 deleterious(0.03) probably_damaging(0.996) TCGA-NC-A5HM-01 21 27326920 27326920 C A APP Missense_Mutation p.E557D 0.45 tolerated(0.15) benign(0.008) TCGA-NC-A5HM-01 21 43796759 43796759 A T TMPRSS3 Missense_Mutation p.V362D 0.56 deleterious(0) probably_damaging(1) TCGA-NC-A5HM-01 21 45999642 45999642 A T KRTAP10-5 Nonstop_Mutation p.*272Rext*11 0.47 TCGA-NC-A5HM-01 22 16256566 16256566 G T POTEH 3'UTR 0.07 TCGA-NC-A5HM-01 22 23135191 23135191 G C IGLV2-11 Missense_Mutation p.W18S 0.07 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-NC-A5HM-01 22 38154100 38154100 G A TRIOBP Silent p.E2056E 0.20 TCGA-NC-A5HM-01 22 50499954 50499954 T C MLC1 3'UTR 0.10 TCGA-NC-A5HM-01 2 100194867 100194867 C A AFF3 Missense_Mutation p.R972L 0.24 tolerated(0.24) benign(0.109) TCGA-NC-A5HM-01 2 125192101 125192101 G C CNTNAP5 Silent p.L190L 0.31 TCGA-NC-A5HM-01 2 136567442 136567442 G T LCT Missense_Mutation p.S825R 0.32 tolerated(0.4) possibly_damaging(0.824) TCGA-NC-A5HM-01 2 167141034 167141034 A T SCN9A Missense_Mutation p.S635T 0.31 tolerated(0.39) benign(0.015) TCGA-NC-A5HM-01 2 168725851 168725851 G C B3GALT1 Missense_Mutation p.W101S 0.31 deleterious(0) probably_damaging(1) TCGA-NC-A5HM-01 2 179402350 179402350 T G TTN Missense_Mutation p.Q33195P 0.29 TCGA-NC-A5HM-01 2 179402351 179402351 G T TTN Missense_Mutation p.Q33195K 0.28 TCGA-NC-A5HM-01 2 179424233 179424233 G A TTN Missense_Mutation p.P28876S 0.09 TCGA-NC-A5HM-01 2 179435295 179435295 A G TTN Silent p.N25188N 0.36 TCGA-NC-A5HM-01 2 179473122 179473122 A T TTN Missense_Mutation p.D17496E 0.21 TCGA-NC-A5HM-01 2 179650409 179650409 T C TTN Missense_Mutation p.T811A 0.32 TCGA-NC-A5HM-01 2 185800702 185800702 T C ZNF804A Silent p.Y193Y 0.33 TCGA-NC-A5HM-01 2 185801010 185801010 T C ZNF804A Missense_Mutation p.I296T 0.37 tolerated(0.79) benign(0.025) TCGA-NC-A5HM-01 2 185802285 185802285 C A ZNF804A Missense_Mutation p.T721N 0.26 deleterious(0.01) probably_damaging(0.981) TCGA-NC-A5HM-01 2 189452596 189452596 G T GULP1 Nonsense_Mutation p.G255* 0.28 TCGA-NC-A5HM-01 2 202003113 202003113 A G CFLAR Intron 0.37 TCGA-NC-A5HM-01 2 206110547 206110547 G T PARD3B Splice_Site p.X667_splice 0.24 TCGA-NC-A5HM-01 2 207026656 207026656 G A EEF1B2 Intron 0.32 TCGA-NC-A5HM-01 2 209271765 209271765 G T PTH2R 5'UTR 0.30 TCGA-NC-A5HM-01 2 211452787 211452787 C A CPS1 Silent p.V215V 0.24 TCGA-NC-A5HM-01 2 220354369 220354369 C T SPEG Missense_Mutation p.L2877F 0.29 benign(0.069) TCGA-NC-A5HM-01 2 237028862 237028862 C T AGAP1 Missense_Mutation p.A714V 0.29 deleterious(0) probably_damaging(0.98) TCGA-NC-A5HM-01 2 239040432 239040432 T A ESPNL 3'UTR 0.38 TCGA-NC-A5HM-01 2 24964757 24964757 G C NCOA1 Missense_Mutation p.R1136S 0.30 deleterious(0) benign(0.227) TCGA-NC-A5HM-01 2 32530597 32530597 T G YIPF4 Missense_Mutation p.L213V 0.43 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HM-01 2 77745643 77745643 G T LRRTM4 Missense_Mutation p.P451Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HM-01 2 80874798 80874798 C T CTNNA2 Missense_Mutation p.T840I 0.26 deleterious(0) possibly_damaging(0.511) TCGA-NC-A5HM-01 2 88390535 88390535 A T SMYD1 Missense_Mutation p.N178I 0.43 deleterious(0.01) benign(0.413) TCGA-NC-A5HM-01 3 108219042 108219042 T A MYH15 Missense_Mutation p.Y160F 0.31 deleterious(0.04) probably_damaging(0.985) TCGA-NC-A5HM-01 3 108724074 108724074 C T MORC1 Missense_Mutation p.R619K 0.44 tolerated(0.2) benign(0.169) TCGA-NC-A5HM-01 3 112666704 112666704 T A CD200R1 Missense_Mutation p.L45F 0.19 tolerated(0.23) benign(0.293) TCGA-NC-A5HM-01 3 113784152 113784152 A T QTRTD1 Missense_Mutation p.K28N 0.22 tolerated(0.36) benign(0.037) TCGA-NC-A5HM-01 3 113795671 113795671 G T QTRTD1 Missense_Mutation p.A222S 0.17 tolerated(0.07) possibly_damaging(0.835) TCGA-NC-A5HM-01 3 116163933 116163933 T C LSAMP 5'UTR 0.31 TCGA-NC-A5HM-01 3 116163935 116163935 G T LSAMP 5'UTR 0.32 TCGA-NC-A5HM-01 3 120357405 120357406 - A HGD Frame_Shift_Ins p.L301Ffs*4 0.16 TCGA-NC-A5HM-01 3 12200233 12200233 G A TIMP4 Silent p.H36H 0.63 TCGA-NC-A5HM-01 3 123694243 123694243 A G ROPN1 Missense_Mutation p.C127R 0.12 deleterious(0) possibly_damaging(0.499) TCGA-NC-A5HM-01 3 134911508 134911508 C A EPHB1 Nonsense_Mutation p.S658* 0.32 TCGA-NC-A5HM-01 3 154139114 154139114 C A GPR149 Missense_Mutation p.R446L 0.41 tolerated(0.3) benign(0.039) TCGA-NC-A5HM-01 3 154832869 154832869 A G MME Missense_Mutation p.N95D 0.38 deleterious(0.01) possibly_damaging(0.525) TCGA-NC-A5HM-01 3 164906841 164906841 C A SLITRK3 Missense_Mutation p.S593I 0.34 deleterious(0) benign(0.175) TCGA-NC-A5HM-01 3 180379729 180379729 C G CCDC39 Missense_Mutation p.E93Q 0.30 deleterious(0) probably_damaging(0.945) TCGA-NC-A5HM-01 3 185774954 185774954 G A ETV5 Silent p.F373F 0.23 TCGA-NC-A5HM-01 3 186959323 186959323 G C MASP1 Missense_Mutation p.Q417E 0.24 tolerated(0.33) benign(0.005) TCGA-NC-A5HM-01 3 193040320 193040320 G A ATP13A5 Missense_Mutation p.S573L 0.21 tolerated(0.36) benign(0.002) TCGA-NC-A5HM-01 3 40529783 40529783 G T ZNF619 3'UTR 0.48 TCGA-NC-A5HM-01 3 47125730 47125730 T C SETD2 Missense_Mutation p.N1847S 0.47 tolerated(0.1) probably_damaging(0.993) TCGA-NC-A5HM-01 3 49698523 49698523 C T BSN Missense_Mutation p.T3082I 0.41 unknown(0) TCGA-NC-A5HM-01 3 69151100 69151100 G T ARL6IP5 Missense_Mutation p.R96L 0.51 tolerated(0.14) benign(0.047) TCGA-NC-A5HM-01 3 78767029 78767029 C A ROBO1 Missense_Mutation p.R221L 0.51 deleterious(0.01) probably_damaging(0.969) TCGA-NC-A5HM-01 4 122828522 122828522 T A TRPC3 Missense_Mutation p.M665L 0.58 tolerated(0.25) benign(0.313) TCGA-NC-A5HM-01 4 123166296 123166296 G A KIAA1109 Splice_Site p.X1679_splice 0.56 TCGA-NC-A5HM-01 4 13339835 13339835 C A HSP90AB2P RNA 0.25 TCGA-NC-A5HM-01 4 153875377 153875377 G T FHDC1 Missense_Mutation p.R190L 0.46 tolerated(0.07) benign(0.023) TCGA-NC-A5HM-01 4 153875378 153875378 G T FHDC1 Silent p.R190R 0.47 TCGA-NC-A5HM-01 4 158238848 158238848 C A GRIA2 Nonsense_Mutation p.Y235* 0.51 TCGA-NC-A5HM-01 4 164050010 164050010 A T NAF1 3'UTR 0.41 TCGA-NC-A5HM-01 4 187532672 187532672 C G FAT1 Missense_Mutation p.E3241Q 0.47 probably_damaging(1) TCGA-NC-A5HM-01 4 189068150 189068150 A T TRIML1 Missense_Mutation p.E344V 0.58 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HM-01 4 1985622 1985623 TC - NELFA Frame_Shift_Del p.Q429Hfs*10 0.16 TCGA-NC-A5HM-01 4 2835495 2835495 C G SH3BP2 Silent p.T597T 0.16 TCGA-NC-A5HM-01 4 3319701 3319701 T G RGS12 Missense_Mutation p.W602G 0.33 tolerated(0.07) probably_damaging(0.931) TCGA-NC-A5HM-01 4 3446452 3446452 G T HGFAC Missense_Mutation p.C278F 0.50 deleterious(0) probably_damaging(0.945) TCGA-NC-A5HM-01 4 55593476 55593476 T C KIT Missense_Mutation p.Y545H 0.08 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HM-01 4 57179515 57179515 G T KIAA1211 Missense_Mutation p.R169S 0.08 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HM-01 4 70160401 70160401 C A UGT2B28 Nonsense_Mutation p.Y488* 0.48 TCGA-NC-A5HM-01 4 70160402 70160402 C A UGT2B28 Missense_Mutation p.H489N 0.47 deleterious(0) probably_damaging(1) TCGA-NC-A5HM-01 4 70455070 70455070 T C UGT2A1 3'UTR 0.67 TCGA-NC-A5HM-01 4 78663399 78663399 C A CNOT6L Missense_Mutation p.E256D 0.58 tolerated(0.44) benign(0.003) TCGA-NC-A5HM-01 4 95508146 95508146 G C PDLIM5 Intron 0.12 TCGA-NC-A5HM-01 5 122359634 122359634 G C PPIC Missense_Mutation p.S192W 0.50 deleterious(0.01) benign(0.033) TCGA-NC-A5HM-01 5 137235206 137235206 T C PKD2L2 Missense_Mutation p.W176R 0.47 deleterious(0) probably_damaging(1) TCGA-NC-A5HM-01 5 140056985 140056985 C T HARS Silent p.K250K 0.59 TCGA-NC-A5HM-01 5 140183168 140183168 T A PCDHA3 Missense_Mutation p.S796T 0.47 tolerated_low_confidence(0.52) benign(0.002) TCGA-NC-A5HM-01 5 140203040 140203040 C T PCDHA5 Silent p.N560N 0.52 TCGA-NC-A5HM-01 5 140741247 140741248 CG - PCDHGB2 Frame_Shift_Del p.Q517Afs*6 0.16 TCGA-NC-A5HM-01 5 153190617 153190617 C T GRIA1 Silent p.N861N 0.47 TCGA-NC-A5HM-01 5 161309572 161309572 A G GABRA1 Missense_Mutation p.T190A 0.44 deleterious(0.01) probably_damaging(0.983) TCGA-NC-A5HM-01 5 24535258 24535258 C A CDH10 Silent p.L259L 0.14 TCGA-NC-A5HM-01 5 45645448 45645448 T A HCN1 Missense_Mutation p.I230F 0.30 deleterious(0.02) probably_damaging(0.996) TCGA-NC-A5HM-01 5 52096167 52096167 C T PELO 5'UTR 0.40 TCGA-NC-A5HM-01 5 6372657 6372657 T A MED10 Nonsense_Mutation p.K123* 0.45 TCGA-NC-A5HM-01 5 79086880 79086880 G T CMYA5 Missense_Mutation p.R3926I 0.48 possibly_damaging(0.902) TCGA-NC-A5HM-01 5 86628380 86628380 C G RASA1 Nonsense_Mutation p.S250* 0.45 TCGA-NC-A5HM-01 6 106992696 106992696 G A AIM1 Missense_Mutation p.E1326K 0.08 deleterious(0) possibly_damaging(0.901) TCGA-NC-A5HM-01 6 112422043 112422043 A G FAM229B 3'UTR 0.35 TCGA-NC-A5HM-01 6 112451103 112451103 A T LAMA4 Missense_Mutation p.C1370S 0.40 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HM-01 6 117683946 117683946 A - ROS1 Frame_Shift_Del p.F1067Lfs*13 0.25 TCGA-NC-A5HM-01 6 124125361 124125361 G T NKAIN2 Missense_Mutation p.G6C 0.31 deleterious(0) possibly_damaging(0.888) TCGA-NC-A5HM-01 6 125284171 125284171 C A RP11-510H23.1 RNA 0.42 TCGA-NC-A5HM-01 6 152686096 152686096 C T SYNE1 Missense_Mutation p.G3344E 0.22 benign(0.128) TCGA-NC-A5HM-01 6 152688433 152688433 C A SYNE1 Missense_Mutation p.D3298Y 0.44 probably_damaging(0.982) TCGA-NC-A5HM-01 6 152751744 152751744 C G SYNE1 Missense_Mutation p.R1521P 0.24 possibly_damaging(0.884) TCGA-NC-A5HM-01 6 153332725 153332725 G T RGS17 Missense_Mutation p.S206Y 0.07 deleterious(0.01) benign(0.192) TCGA-NC-A5HM-01 6 167796381 167796381 C A TCP10 5'UTR 0.33 TCGA-NC-A5HM-01 6 168226367 168226367 A G MLLT4 5'Flank 0.06 TCGA-NC-A5HM-01 6 24145813 24145813 G A NRSN1 Missense_Mutation p.G76E 0.27 deleterious(0) probably_damaging(1) TCGA-NC-A5HM-01 6 28195004 28195004 A T ZSCAN9 Missense_Mutation p.R48W 0.36 deleterious(0) probably_damaging(1) TCGA-NC-A5HM-01 6 29012545 29012545 C A OR2W1 Missense_Mutation p.M136I 0.27 deleterious(0.02) probably_damaging(0.985) TCGA-NC-A5HM-01 6 30587365 30587365 T C MRPS18B Silent p.Y58Y 0.04 TCGA-NC-A5HM-01 6 32029178 32029178 C G TNXB Silent p.V2496V 0.06 TCGA-NC-A5HM-01 6 32811719 32811719 G A PSMB8 Missense_Mutation p.L19F 0.29 tolerated(0.34) benign(0.001) TCGA-NC-A5HM-01 6 36275400 36275400 G T PNPLA1 Missense_Mutation p.K502N 0.24 deleterious_low_confidence(0) possibly_damaging(0.848) TCGA-NC-A5HM-01 6 50011462 50011462 C G DEFB112 Silent p.A56A 0.20 TCGA-NC-A5HM-01 6 69653748 69653748 C G BAI3 Missense_Mutation p.P353A 0.34 deleterious(0.04) probably_damaging(0.998) TCGA-NC-A5HM-01 6 70926664 70926664 C A COL9A1 Missense_Mutation p.C901F 0.34 probably_damaging(0.999) TCGA-NC-A5HM-01 6 80816585 80816585 G T BCKDHB Missense_Mutation p.D59Y 0.43 deleterious(0.03) possibly_damaging(0.873) TCGA-NC-A5HM-01 6 94066628 94066628 G T EPHA7 Silent p.G377G 0.26 TCGA-NC-A5HM-01 7 100279845 100279845 T G GIGYF1 Silent p.V925V 0.46 TCGA-NC-A5HM-01 7 102523878 102523878 A C FBXL13 Missense_Mutation p.I421R 0.37 deleterious(0) benign(0.395) TCGA-NC-A5HM-01 7 103216004 103216004 C A RELN Nonsense_Mutation p.G1432* 0.32 TCGA-NC-A5HM-01 7 117230423 117230423 G A CFTR Missense_Mutation p.A566T 0.26 deleterious(0) possibly_damaging(0.647) TCGA-NC-A5HM-01 7 123508886 123508886 G C HYAL4 Missense_Mutation p.A187P 0.40 deleterious(0) probably_damaging(0.986) TCGA-NC-A5HM-01 7 140301947 140301947 C G DENND2A Missense_Mutation p.S84T 0.43 tolerated(0.54) benign(0.039) TCGA-NC-A5HM-01 7 141708455 141708455 G T MGAM Missense_Mutation p.V93L 0.35 tolerated(0.39) benign(0.007) TCGA-NC-A5HM-01 7 18868832 18868832 A T HDAC9 Missense_Mutation p.T791S 0.32 tolerated(0.12) benign(0.021) TCGA-NC-A5HM-01 7 19184733 19184733 C G FERD3L Missense_Mutation p.G85R 0.29 tolerated(0.16) benign(0.235) TCGA-NC-A5HM-01 7 20785063 20785063 T C ABCB5 Splice_Site p.X1143_splice 0.33 TCGA-NC-A5HM-01 7 37936572 37936572 C A NME8 Missense_Mutation p.P549T 0.34 deleterious(0.03) probably_damaging(1) TCGA-NC-A5HM-01 7 50468079 50468080 GC - IKZF1 Frame_Shift_Del p.A398Rfs*48 0.22 TCGA-NC-A5HM-01 7 50611760 50611760 C T DDC Silent p.R8R 0.36 TCGA-NC-A5HM-01 7 5327490 5327490 G T SLC29A4 Missense_Mutation p.A15S 0.27 deleterious_low_confidence(0.03) benign(0.089) TCGA-NC-A5HM-01 7 63727107 63727107 A G ZNF679 Missense_Mutation p.T366A 0.23 tolerated(0.34) benign(0.138) TCGA-NC-A5HM-01 7 83277865 83277865 G T SEMA3E 5'UTR 0.57 TCGA-NC-A5HM-01 7 94916442 94916442 C T PPP1R9A Intron 0.27 TCGA-NC-A5HM-01 8 109214126 109214126 A G EIF3E Silent p.S442S 0.23 TCGA-NC-A5HM-01 8 11163767 11163767 G A MTMR9 Silent p.L220L 0.31 TCGA-NC-A5HM-01 8 143958551 143958551 C A CYP11B1 Silent p.V161V 0.51 TCGA-NC-A5HM-01 8 2026924 2026924 A T MYOM2 Missense_Mutation p.R458W 0.54 deleterious(0) probably_damaging(0.983) TCGA-NC-A5HM-01 8 48762017 48762017 T C PRKDC Silent p.Q2350Q 0.34 TCGA-NC-A5HM-01 8 53025852 53025852 G T ST18 Missense_Mutation p.T1017K 0.13 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HM-01 8 53025853 53025853 T G ST18 Missense_Mutation p.T1017P 0.13 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HM-01 8 72967937 72967937 G C TRPA1 Missense_Mutation p.L450V 0.33 deleterious(0) probably_damaging(0.996) TCGA-NC-A5HM-01 8 77896101 77896101 C G PEX2 Missense_Mutation p.W105S 0.28 tolerated(0.29) benign(0.145) TCGA-NC-A5HM-01 8 87541201 87541201 G T CPNE3 Missense_Mutation p.C54F 0.23 deleterious(0.01) possibly_damaging(0.781) TCGA-NC-A5HM-01 9 130915401 130915401 G A LCN2 3'UTR 0.51 TCGA-NC-A5HM-01 9 131670132 131670132 G A LRRC8A Missense_Mutation p.G230D 0.66 tolerated(0.06) probably_damaging(0.998) TCGA-NC-A5HM-01 9 14848660 14848662 TAC AG FREM1 Splice_Site p.X421_splice 0.29 TCGA-NC-A5HM-01 9 18777111 18777111 G A ADAMTSL1 Missense_Mutation p.G962R 0.36 deleterious(0) probably_damaging(0.964) TCGA-NC-A5HM-01 9 21217118 21217118 G - IFNA16 Frame_Shift_Del p.Q63Rfs*21 0.26 TCGA-NC-A5HM-01 9 27949442 27949442 G T LINGO2 Missense_Mutation p.P410T 0.07 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HM-01 9 37783956 37783956 G A EXOSC3 Silent p.Y143Y 0.38 TCGA-NC-A5HM-01 9 73167787 73167787 C T TRPM3 Missense_Mutation p.D1171N 0.29 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HM-01 9 77442756 77442756 C A TRPM6 Missense_Mutation p.G260V 0.06 deleterious(0) probably_damaging(0.96) TCGA-NC-A5HM-01 9 7799793 7799793 A G TMEM261 5'UTR 0.41 TCGA-NC-A5HM-01 9 85605380 85605380 C G RASEF Silent p.T681T 0.55 TCGA-NC-A5HM-01 X 113966004 113966004 G T HTR2C Missense_Mutation p.A113S 0.62 tolerated(0.06) benign(0.009) TCGA-NC-A5HM-01 X 123554501 123554501 C A TENM1 Missense_Mutation p.D1548Y 0.63 deleterious(0) possibly_damaging(0.825) TCGA-NC-A5HM-01 X 142716367 142716367 C A SLITRK4 3'UTR 0.73 TCGA-NC-A5HM-01 X 147026407 147026407 C G FMR1 Nonsense_Mutation p.S497* 0.12 TCGA-NC-A5HM-01 X 25028387 25028387 G T ARX Missense_Mutation p.A370D 0.68 deleterious(0) probably_damaging(0.924) TCGA-NC-A5HM-01 X 27766590 27766590 T A DCAF8L2 Silent p.P526P 0.68 TCGA-NC-A5HM-01 X 30254234 30254234 C A MAGEB3 Missense_Mutation p.P65T 0.76 tolerated(0.05) benign(0.178) TCGA-NC-A5HM-01 X 47271946 47271946 A T ZNF157 Silent p.G158G 0.62 TCGA-NC-A5HM-01 X 50377758 50377758 C A SHROOM4 Missense_Mutation p.V439L 0.60 tolerated(0.84) benign(0.009) TCGA-NC-A5HM-01 X 57358078 57358078 A G FAAH2 Missense_Mutation p.K154E 0.66 tolerated(0.98) benign(0.004) TCGA-NC-A5HM-01 X 5811339 5811339 C A NLGN4X Missense_Mutation p.G657V 0.61 tolerated(0.13) benign(0) TCGA-NC-A5HM-01 X 5811340 5811340 C A NLGN4X Missense_Mutation p.G657W 0.61 deleterious(0.01) benign(0.215) TCGA-NC-A5HM-01 X 74519652 74519652 A T UPRT Silent p.T215T 0.74 TCGA-NC-A5HM-01 X 8500999 8500999 C A KAL1 3'UTR 0.64 TCGA-NC-A5HM-01 X 96139625 96139625 C G RPA4 Missense_Mutation p.Q106E 0.26 deleterious(0.01) possibly_damaging(0.755) TCGA-NC-A5HN-01 10 101567183 101567183 G T ABCC2 Missense_Mutation p.V525L 0.26 deleterious(0.01) possibly_damaging(0.633) TCGA-NC-A5HN-01 10 102789885 102789885 A T PDZD7 Missense_Mutation p.L31Q 0.50 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-NC-A5HN-01 10 103587057 103587057 A G KCNIP2 3'Flank 0.08 TCGA-NC-A5HN-01 10 105046901 105046901 A G INA Missense_Mutation p.E392G 0.14 deleterious(0) probably_damaging(1) TCGA-NC-A5HN-01 10 105184905 105184905 C T PDCD11 Silent p.V976V 0.33 TCGA-NC-A5HN-01 10 115529553 115529553 C T PLEKHS1 Missense_Mutation p.S143L 0.23 tolerated(0.1) benign(0.441) TCGA-NC-A5HN-01 10 116060435 116060435 C T AFAP1L2 Silent p.E519E 0.22 TCGA-NC-A5HN-01 10 16553256 16553256 G T PTER 3'UTR 0.16 TCGA-NC-A5HN-01 10 17210909 17210909 G T TRDMT1 Missense_Mutation p.T61K 0.42 tolerated(0.09) benign(0.074) TCGA-NC-A5HN-01 10 26825146 26825146 G T APBB1IP Missense_Mutation p.K348N 0.21 deleterious(0) probably_damaging(0.994) TCGA-NC-A5HN-01 10 27436361 27436361 C G YME1L1 Intron 0.18 TCGA-NC-A5HN-01 10 28905108 28905108 G C WAC Missense_Mutation p.Q521H 0.20 tolerated(0.23) benign(0.121) TCGA-NC-A5HN-01 10 30317850 30317850 T C KIAA1462 Silent p.A409A 0.39 TCGA-NC-A5HN-01 10 35772369 35772369 G T CCNY Silent p.R64R 0.21 TCGA-NC-A5HN-01 10 37422940 37422940 A T ANKRD30A Silent p.G182G 0.19 TCGA-NC-A5HN-01 10 38484550 38484550 T A RP11-508N22.8 RNA 0.23 TCGA-NC-A5HN-01 10 43619142 43619142 G C RET Missense_Mutation p.W942S 0.49 deleterious(0) probably_damaging(1) TCGA-NC-A5HN-01 10 49446058 49446058 C A FRMPD2 Missense_Mutation p.R299S 0.26 tolerated(0.27) benign(0.091) TCGA-NC-A5HN-01 10 50819718 50819718 C A SLC18A3 Missense_Mutation p.T311N 0.52 deleterious(0) probably_damaging(1) TCGA-NC-A5HN-01 10 50916582 50916582 C A C10orf53 Silent p.T131T 0.23 TCGA-NC-A5HN-01 10 50943232 50943232 C T OGDHL 3'UTR 0.23 TCGA-NC-A5HN-01 10 50952039 50952039 C T OGDHL Splice_Site p.X621_splice 0.28 TCGA-NC-A5HN-01 10 51584746 51584746 C T NCOA4 Missense_Mutation p.S298F 0.28 tolerated(0.09) probably_damaging(0.972) TCGA-NC-A5HN-01 10 70191662 70191662 A T DNA2 Missense_Mutation p.V733E 0.24 deleterious(0) probably_damaging(0.99) TCGA-NC-A5HN-01 10 70514556 70514556 G A CCAR1 Missense_Mutation p.G477E 0.31 tolerated(0.38) possibly_damaging(0.792) TCGA-NC-A5HN-01 10 70734425 70734425 G C DDX21 Splice_Site p.X557_splice 0.17 TCGA-NC-A5HN-01 10 7269883 7269883 G T SFMBT2 Missense_Mutation p.D379E 0.31 tolerated(0.12) benign(0.402) TCGA-NC-A5HN-01 10 73511471 73511471 G T C10orf54 Silent p.T284T 0.21 TCGA-NC-A5HN-01 10 75567975 75567975 C T NDST2 Missense_Mutation p.G58S 0.27 tolerated_low_confidence(0.86) benign(0.005) TCGA-NC-A5HN-01 10 7608336 7608336 G C ITIH5 Silent p.P728P 0.43 TCGA-NC-A5HN-01 10 8092785 8092785 G A GATA3 5'Flank 0.26 TCGA-NC-A5HN-01 10 82033358 82033358 C A MAT1A 3'UTR 0.29 TCGA-NC-A5HN-01 10 84711223 84711223 A C NRG3 Splice_Site p.X352_splice 0.39 TCGA-NC-A5HN-01 10 91514365 91514365 C T KIF20B Nonsense_Mutation p.R1440* 0.23 TCGA-NC-A5HN-01 10 94700555 94700555 G T EXOC6 Silent p.L428L 0.56 TCGA-NC-A5HN-01 10 97174268 97174268 C T SORBS1 Missense_Mutation p.G265R 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-NC-A5HN-01 10 97983655 97983655 G T BLNK Missense_Mutation p.S151Y 0.22 deleterious(0.01) possibly_damaging(0.498) TCGA-NC-A5HN-01 11 101818855 101818855 G C KIAA1377 Missense_Mutation p.R163T 0.18 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HN-01 11 102206783 102206783 G A BIRC3 Missense_Mutation p.A471T 0.27 tolerated(0.12) benign(0.084) TCGA-NC-A5HN-01 11 104778292 104778292 G A RP11-693N9.2 RNA 0.40 TCGA-NC-A5HN-01 11 116706782 116706782 C G APOA1 Silent p.A182A 0.29 TCGA-NC-A5HN-01 11 119020822 119020822 C A ABCG4 Silent p.R49R 0.28 TCGA-NC-A5HN-01 11 120300181 120300181 A T ARHGEF12 Silent p.V206V 0.35 TCGA-NC-A5HN-01 11 122848402 122848402 G A BSX Silent p.D219D 0.09 TCGA-NC-A5HN-01 11 123894354 123894354 T A OR10G9 Missense_Mutation p.L212Q 0.20 deleterious(0) probably_damaging(0.989) TCGA-NC-A5HN-01 11 124561675 124561675 C T SPA17 Silent p.I103I 0.10 TCGA-NC-A5HN-01 11 132527052 132527052 T C OPCML Silent p.E110E 0.30 TCGA-NC-A5HN-01 11 14991541 14991541 T A CALCA Missense_Mutation p.Q56L 0.29 deleterious(0) benign(0.052) TCGA-NC-A5HN-01 11 17464296 17464296 C A ABCC8 Missense_Mutation p.R534M 0.43 tolerated(0.17) possibly_damaging(0.614) TCGA-NC-A5HN-01 11 17464729 17464729 G A ABCC8 Missense_Mutation p.T488I 0.43 tolerated(0.05) benign(0.044) TCGA-NC-A5HN-01 11 19954891 19954891 C G NAV2 Missense_Mutation p.H390Q 0.33 deleterious(0.02) benign(0.209) TCGA-NC-A5HN-01 11 20805242 20805242 C G NELL1 Missense_Mutation p.I67M 0.39 deleterious(0) possibly_damaging(0.836) TCGA-NC-A5HN-01 11 22399233 22399233 C A SLC17A6 Missense_Mutation p.Q566K 0.68 tolerated(0.08) benign(0.003) TCGA-NC-A5HN-01 11 32449516 32449516 C A WT1 Missense_Mutation p.R286S 0.48 deleterious_low_confidence(0.02) possibly_damaging(0.852) TCGA-NC-A5HN-01 11 44069634 44069634 A C ACCSL Missense_Mutation p.R16S 0.44 tolerated(0.16) benign(0.006) TCGA-NC-A5HN-01 11 48238409 48238409 C T OR4B1 Silent p.F16F 0.26 TCGA-NC-A5HN-01 11 49973985 49973985 G C OR4C13 Missense_Mutation p.R4T 0.40 tolerated(0.05) benign(0.005) TCGA-NC-A5HN-01 11 49974022 49974022 A T OR4C13 Silent p.T16T 0.13 TCGA-NC-A5HN-01 11 55111383 55111383 C A OR4A16 Missense_Mutation p.P236H 0.43 deleterious_low_confidence(0.01) benign(0.032) TCGA-NC-A5HN-01 11 55370944 55370944 G - OR4C11 Frame_Shift_Del p.I304Lfs*12 0.37 TCGA-NC-A5HN-01 11 55606311 55606311 C A OR5D16 Silent p.P28P 0.53 TCGA-NC-A5HN-01 11 55653610 55653610 A - TRIM51 Frame_Shift_Del p.M144Cfs*15 0.26 TCGA-NC-A5HN-01 11 55681720 55681720 T C OR5W2 Silent p.L113L 0.14 TCGA-NC-A5HN-01 11 55761780 55761780 C A OR5F1 Missense_Mutation p.A108S 0.25 tolerated(0.06) possibly_damaging(0.611) TCGA-NC-A5HN-01 11 55861343 55861343 C A OR8I2 Missense_Mutation p.S187Y 0.17 deleterious(0) probably_damaging(0.91) TCGA-NC-A5HN-01 11 56380780 56380780 A T OR5M1 Missense_Mutation p.S67T 0.31 deleterious(0) probably_damaging(0.995) TCGA-NC-A5HN-01 11 56468770 56468770 C T OR9G1 Missense_Mutation p.L303F 0.13 deleterious(0.02) benign(0.031) TCGA-NC-A5HN-01 11 56510772 56510772 T A OR9G4 Silent p.I172I 0.25 TCGA-NC-A5HN-01 11 58190222 58190222 C A OR5B2 Silent p.L171L 0.41 TCGA-NC-A5HN-01 11 58916424 58916424 C T FAM111A Missense_Mutation p.P27S 0.17 deleterious(0.05) benign(0.057) TCGA-NC-A5HN-01 11 59190051 59190051 C G OR5A2 Missense_Mutation p.A126P 0.15 deleterious(0.01) possibly_damaging(0.452) TCGA-NC-A5HN-01 11 60164004 60164004 G C MS4A14 5'UTR 0.21 TCGA-NC-A5HN-01 11 60184272 60184272 G C MS4A14 Missense_Mutation p.A644P 0.21 tolerated(0.22) benign(0.265) TCGA-NC-A5HN-01 11 6023541 6023541 C A OR56A4 Missense_Mutation p.V280L 0.38 deleterious(0) possibly_damaging(0.84) TCGA-NC-A5HN-01 11 61488234 61488234 G A DAGLA Missense_Mutation p.R60H 0.29 tolerated(0.53) probably_damaging(0.994) TCGA-NC-A5HN-01 11 62415003 62415003 C A INTS5 Missense_Mutation p.R850L 0.25 tolerated(0.26) benign(0.3) TCGA-NC-A5HN-01 11 62455349 62455349 C A LRRN4CL Missense_Mutation p.C211F 0.42 deleterious(0.05) possibly_damaging(0.87) TCGA-NC-A5HN-01 11 64669568 64669568 G C ATG2A Missense_Mutation p.P1329A 0.34 tolerated(0.21) benign(0.001) TCGA-NC-A5HN-01 11 65321247 65321247 G A LTBP3 Silent p.P263P 0.29 TCGA-NC-A5HN-01 11 6541267 6541267 T G DNHD1 Missense_Mutation p.C574G 0.40 benign(0.101) TCGA-NC-A5HN-01 11 66332265 66332265 C A CTSF Missense_Mutation p.W393L 0.23 deleterious(0) probably_damaging(1) TCGA-NC-A5HN-01 11 67378928 67378928 C A NDUFV1 Missense_Mutation p.S323Y 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-NC-A5HN-01 11 72540381 72540381 C T ATG16L2 Silent p.S602S 0.07 TCGA-NC-A5HN-01 11 74914014 74914014 A C SLCO2B1 Intron 0.19 TCGA-NC-A5HN-01 11 86663569 86663569 C T FZD4 Intron 0.18 TCGA-NC-A5HN-01 11 92495210 92495210 C A FAT3 Silent p.G1286G 0.28 TCGA-NC-A5HN-01 11 92715201 92715201 G T MTNR1B Missense_Mutation p.G271V 0.28 deleterious(0.01) probably_damaging(0.934) TCGA-NC-A5HN-01 12 101779382 101779382 C T UTP20 Missense_Mutation p.S2693F 0.30 deleterious(0) possibly_damaging(0.845) TCGA-NC-A5HN-01 12 102056279 102056279 G A MYBPC1 Missense_Mutation p.G701S 0.20 deleterious(0.02) probably_damaging(1) TCGA-NC-A5HN-01 12 10332208 10332208 C G TMEM52B Missense_Mutation p.P7A 0.16 tolerated_low_confidence(0.83) benign(0.005) TCGA-NC-A5HN-01 12 109526173 109526173 G T ALKBH2 Silent p.S208S 0.23 TCGA-NC-A5HN-01 12 111330939 111330939 C T CCDC63 Silent p.V378V 0.38 TCGA-NC-A5HN-01 12 112182571 112182571 G A ACAD10 Silent p.P644P 0.33 TCGA-NC-A5HN-01 12 113344807 113344807 T C OAS1 5'UTR 0.31 TCGA-NC-A5HN-01 12 113603811 113603811 C A DDX54 Missense_Mutation p.G481C 0.13 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HN-01 12 114397107 114397107 C T RBM19 Missense_Mutation p.G161R 0.35 tolerated(0.06) benign(0.288) TCGA-NC-A5HN-01 12 11546569 11546569 T C PRB2 Missense_Mutation p.N148S 0.19 tolerated(0.4) unknown(0) TCGA-NC-A5HN-01 12 122277676 122277676 G T HPD Missense_Mutation p.N380K 0.18 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HN-01 12 123444726 123444726 G A ABCB9 Silent p.C19C 0.31 TCGA-NC-A5HN-01 12 130856107 130856107 A C PIWIL1 Silent p.P850P 0.36 TCGA-NC-A5HN-01 12 14927344 14927344 C A H2AFJ 5'UTR 0.32 TCGA-NC-A5HN-01 12 15807130 15807130 C G EPS8 Missense_Mutation p.G400A 0.25 tolerated(0.29) benign(0) TCGA-NC-A5HN-01 12 21926601 21926601 G T KCNJ8 5'UTR 0.27 TCGA-NC-A5HN-01 12 30814140 30814140 C A IPO8 Missense_Mutation p.V606L 0.23 tolerated(0.08) benign(0.013) TCGA-NC-A5HN-01 12 31944709 31944709 C T H3F3C Missense_Mutation p.R131Q 0.25 deleterious_low_confidence(0) benign(0.096) TCGA-NC-A5HN-01 12 48134239 48134239 C A RAPGEF3 Intron 0.22 TCGA-NC-A5HN-01 12 48378383 48378383 C T COL2A1 Splice_Site p.X612_splice 0.25 TCGA-NC-A5HN-01 12 4881841 4881841 T C GALNT8 3'UTR 0.20 TCGA-NC-A5HN-01 12 49445134 49445134 A G KMT2D Missense_Mutation p.C778R 0.29 unknown(0) TCGA-NC-A5HN-01 12 49463584 49463584 C A RHEBL1 5'UTR 0.27 TCGA-NC-A5HN-01 12 50185786 50185786 G T NCKAP5L Missense_Mutation p.P1281T 0.18 tolerated(0.05) benign(0.005) TCGA-NC-A5HN-01 12 51865318 51865318 T A SLC4A8 Splice_Site p.X635_splice 0.28 TCGA-NC-A5HN-01 12 52306232 52306232 C A ACVRL1 Intron 0.32 TCGA-NC-A5HN-01 12 54403358 54403358 A T HOXC8 Missense_Mutation p.Q97L 0.59 deleterious(0.02) possibly_damaging(0.655) TCGA-NC-A5HN-01 12 56346685 56346685 C T DGKA Silent p.T637T 0.21 TCGA-NC-A5HN-01 12 56872030 56872030 G A GLS2 Missense_Mutation p.P184L 0.51 deleterious(0) probably_damaging(0.985) TCGA-NC-A5HN-01 12 58217493 58217493 C G CTDSP2 Missense_Mutation p.W236C 0.11 deleterious(0) probably_damaging(1) TCGA-NC-A5HN-01 12 64202772 64202772 G C TMEM5 Missense_Mutation p.R411T 0.34 deleterious(0) probably_damaging(1) TCGA-NC-A5HN-01 12 6711229 6711229 G A CHD4 Missense_Mutation p.P112L 0.44 deleterious_low_confidence(0.02) possibly_damaging(0.908) TCGA-NC-A5HN-01 12 6968678 6968678 A G USP5 Missense_Mutation p.D368G 0.26 deleterious(0) possibly_damaging(0.705) TCGA-NC-A5HN-01 12 78569137 78569137 G T NAV3 Missense_Mutation p.S1678I 0.31 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HN-01 12 7867956 7867956 C A DPPA3 Missense_Mutation p.T87K 0.57 deleterious(0) probably_damaging(0.958) TCGA-NC-A5HN-01 12 90028774 90028774 C A ATP2B1 Missense_Mutation p.G221C 0.13 deleterious(0) probably_damaging(1) TCGA-NC-A5HN-01 12 96374338 96374338 G A HAL Silent p.A505A 0.32 TCGA-NC-A5HN-01 12 97078485 97078485 A T C12orf55 Missense_Mutation p.S1926C 0.22 deleterious(0) benign(0.353) TCGA-NC-A5HN-01 12 98848691 98848691 C T SLC9A7P1 RNA 0.33 TCGA-NC-A5HN-01 13 108861376 108861376 G T LIG4 Nonsense_Mutation p.C747* 0.40 TCGA-NC-A5HN-01 13 20797324 20797324 C T GJB6 Missense_Mutation p.R99K 0.33 tolerated(0.15) benign(0.035) TCGA-NC-A5HN-01 13 23907710 23907711 - C SACS Frame_Shift_Ins p.S3435Rfs*6 0.26 TCGA-NC-A5HN-01 13 25479507 25479507 T C CENPJ Missense_Mutation p.N890S 0.38 tolerated(0.1) benign(0.045) TCGA-NC-A5HN-01 13 28964068 28964068 T C FLT1 Missense_Mutation p.T612A 0.46 tolerated(0.51) benign(0.013) TCGA-NC-A5HN-01 13 29599758 29599758 C G MTUS2 Missense_Mutation p.A318G 0.35 tolerated(0.13) benign(0.023) TCGA-NC-A5HN-01 13 32972575 32972575 G A BRCA2 Missense_Mutation p.E3309K 0.18 tolerated(0.13) probably_damaging(0.999) TCGA-NC-A5HN-01 13 33684085 33684085 T C STARD13 Missense_Mutation p.D991G 0.42 tolerated(0.08) probably_damaging(1) TCGA-NC-A5HN-01 13 34540348 34540348 T C RFC3 3'UTR 0.29 TCGA-NC-A5HN-01 13 35782907 35782907 G T NBEA Missense_Mutation p.A1813S 0.39 tolerated(0.6) benign(0) TCGA-NC-A5HN-01 13 35864575 35864575 G C NBEA Silent p.L1942L 0.33 TCGA-NC-A5HN-01 13 41949652 41949652 T C NAA16 Missense_Mutation p.F837L 0.20 deleterious(0.01) benign(0.417) TCGA-NC-A5HN-01 13 41949667 41949667 A G NAA16 Missense_Mutation p.N842D 0.23 tolerated(0.5) benign(0.004) TCGA-NC-A5HN-01 13 51921288 51921288 C T SERPINE3 Silent p.D206D 0.46 TCGA-NC-A5HN-01 13 52373734 52373734 G T DHRS12 Silent p.V42V 0.34 TCGA-NC-A5HN-01 13 60453448 60453448 T G DIAPH3 Missense_Mutation p.E841A 0.34 deleterious(0) probably_damaging(1) TCGA-NC-A5HN-01 13 78184197 78184197 C G SCEL Missense_Mutation p.D431E 0.16 tolerated(0.1) benign(0.107) TCGA-NC-A5HN-01 13 92345797 92345797 G T GPC5 Missense_Mutation p.A228S 0.23 deleterious(0.01) possibly_damaging(0.536) TCGA-NC-A5HN-01 13 92346101 92346101 A G GPC5 Missense_Mutation p.Q329R 0.18 tolerated(0.26) possibly_damaging(0.61) TCGA-NC-A5HN-01 14 100384118 100384118 G C EML1 Splice_Site p.X604_splice 0.11 TCGA-NC-A5HN-01 14 101350906 101350906 G A RTL1 Missense_Mutation p.L74F 0.13 tolerated_low_confidence(0.16) possibly_damaging(0.691) TCGA-NC-A5HN-01 14 102505407 102505407 G A DYNC1H1 Missense_Mutation p.R3759H 0.54 possibly_damaging(0.806) TCGA-NC-A5HN-01 14 105419402 105419402 G A AHNAK2 Silent p.L796L 0.12 TCGA-NC-A5HN-01 14 106091106 106091106 G T IGHG4 Missense_Mutation p.L231M 0.04 tolerated(0.11) possibly_damaging(0.458) TCGA-NC-A5HN-01 14 20345014 20345014 C A OR4K2 Silent p.G196G 0.33 TCGA-NC-A5HN-01 14 22090480 22090480 C T TRAV1-1 Missense_Mutation p.A29V 0.29 tolerated(1) benign(0.024) TCGA-NC-A5HN-01 14 23895248 23895248 T C MYH7 Missense_Mutation p.N696S 0.13 deleterious(0.02) possibly_damaging(0.72) TCGA-NC-A5HN-01 14 35465904 35465904 A T SRP54 5'UTR 0.63 TCGA-NC-A5HN-01 14 62536407 62536407 C T SYT16 Missense_Mutation p.R204W 0.52 deleterious(0.03) probably_damaging(0.998) TCGA-NC-A5HN-01 14 77942210 77942210 C A ISM2 Missense_Mutation p.G482W 0.19 tolerated(0.19) possibly_damaging(0.563) TCGA-NC-A5HN-01 14 78184593 78184593 A G SNW1 Silent p.R483R 0.58 TCGA-NC-A5HN-01 14 81609878 81609878 T A TSHR Silent p.P492P 0.35 TCGA-NC-A5HN-01 14 88934291 88934291 G A PTPN21 3'UTR 0.15 TCGA-NC-A5HN-01 14 94964353 94964353 G T SERPINA12 Missense_Mutation p.Q128K 0.14 tolerated(0.28) benign(0.015) TCGA-NC-A5HN-01 14 95669794 95669794 G C CLMN Missense_Mutation p.P631R 0.45 deleterious_low_confidence(0) possibly_damaging(0.534) TCGA-NC-A5HN-01 15 100589150 100589150 T C ADAMTS17 Missense_Mutation p.T835A 0.27 tolerated(0.62) benign(0.08) TCGA-NC-A5HN-01 15 22368623 22368623 C T OR4M2 Silent p.G16G 0.17 TCGA-NC-A5HN-01 15 22382644 22382644 C A OR4N4 Missense_Mutation p.P58T 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-NC-A5HN-01 15 24921426 24921426 A C NPAP1 Silent p.R138R 0.14 TCGA-NC-A5HN-01 15 25417664 25417664 C T SNORD115-3 5'Flank 0.33 TCGA-NC-A5HN-01 15 25616789 25616789 G A UBE3A Missense_Mutation p.L181F 0.10 deleterious(0.02) benign(0.027) TCGA-NC-A5HN-01 15 25939998 25939998 C G ATP10A Missense_Mutation p.R1019P 0.28 deleterious(0.02) benign(0.427) TCGA-NC-A5HN-01 15 25972306 25972306 C A ATP10A Splice_Site p.X283_splice 0.29 TCGA-NC-A5HN-01 15 25972307 25972307 C A ATP10A Nonsense_Mutation p.G283* 0.28 TCGA-NC-A5HN-01 15 31795923 31795923 T C OTUD7A Missense_Mutation p.D324G 0.26 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HN-01 15 33359760 33359760 C A FMN1 Missense_Mutation p.R109I 0.28 tolerated_low_confidence(0.06) unknown(0) TCGA-NC-A5HN-01 15 34021229 34021229 T C RYR3 Splice_Site p.X2401_splice 0.50 TCGA-NC-A5HN-01 15 34355370 34355370 T A CHRM5 Missense_Mutation p.I151N 0.63 deleterious(0) probably_damaging(1) TCGA-NC-A5HN-01 15 43584266 43584266 G A TGM7 Silent p.L157L 0.15 TCGA-NC-A5HN-01 15 48413265 48413265 A T SLC24A5 Silent p.T8T 0.32 TCGA-NC-A5HN-01 15 50526136 50526136 T C SLC27A2 Missense_Mutation p.F543L 0.20 deleterious(0) benign(0.211) TCGA-NC-A5HN-01 15 51981454 51981454 A G SCG3 Silent p.V193V 0.22 TCGA-NC-A5HN-01 15 52876960 52876960 C T FAM214A Missense_Mutation p.R1020H 0.20 deleterious(0) probably_damaging(1) TCGA-NC-A5HN-01 15 55742460 55742460 G T DYX1C1 Missense_Mutation p.P248Q 0.38 deleterious(0.04) probably_damaging(0.996) TCGA-NC-A5HN-01 15 55790544 55790544 G T DYX1C1 5'UTR 0.37 TCGA-NC-A5HN-01 15 57730959 57730959 G A CGNL1 Silent p.G254G 0.60 TCGA-NC-A5HN-01 15 59500037 59500037 G A LDHAL6B Missense_Mutation p.A300T 0.20 deleterious(0.01) possibly_damaging(0.859) TCGA-NC-A5HN-01 15 62219513 62219513 G C VPS13C Missense_Mutation p.S2098C 0.23 deleterious(0.01) possibly_damaging(0.687) TCGA-NC-A5HN-01 15 64689944 64689944 A G TRIP4 Missense_Mutation p.N182S 0.26 tolerated(0.13) probably_damaging(0.999) TCGA-NC-A5HN-01 15 66857635 66857635 C T LCTL Silent p.R23R 0.22 TCGA-NC-A5HN-01 15 71256203 71256203 T A LRRC49 Missense_Mutation p.S290T 0.06 tolerated(1) benign(0.004) TCGA-NC-A5HN-01 15 74425109 74425109 G C ISLR2 Missense_Mutation p.R5P 0.07 tolerated(0.2) probably_damaging(0.969) TCGA-NC-A5HN-01 15 74654082 74654082 G A CYP11A1 Intron 0.17 TCGA-NC-A5HN-01 15 79186553 79186553 A G MORF4L1 Silent p.P300P 0.20 TCGA-NC-A5HN-01 15 83226587 83226587 C T CPEB1 Missense_Mutation p.D177N 0.30 tolerated_low_confidence(0.08) possibly_damaging(0.888) TCGA-NC-A5HN-01 15 84683305 84683305 C G ADAMTSL3 Missense_Mutation p.P1329A 0.14 tolerated(0.36) probably_damaging(0.999) TCGA-NC-A5HN-01 15 85189425 85189425 C T WDR73 Silent p.T169T 0.18 TCGA-NC-A5HN-01 15 85406847 85406847 C A ALPK3 Missense_Mutation p.A1694E 0.20 deleterious(0.02) probably_damaging(0.959) TCGA-NC-A5HN-01 15 89395243 89395243 G T ACAN Missense_Mutation p.V749L 0.35 tolerated(0.06) benign(0.001) TCGA-NC-A5HN-01 15 89398462 89398462 C T ACAN Silent p.F882F 0.17 TCGA-NC-A5HN-01 16 1691164 1691164 A G CRAMP1L Missense_Mutation p.K268R 0.34 deleterious(0.04) probably_damaging(0.996) TCGA-NC-A5HN-01 16 24964307 24964307 C A ARHGAP17 Missense_Mutation p.L303F 0.21 tolerated(0.1) possibly_damaging(0.774) TCGA-NC-A5HN-01 16 27078464 27078464 G T C16orf82 RNA 0.62 TCGA-NC-A5HN-01 16 2812731 2812731 C T SRRM2 Silent p.S734S 0.29 TCGA-NC-A5HN-01 16 2816018 2816018 G A SRRM2 Missense_Mutation p.S1830N 0.36 unknown(0) TCGA-NC-A5HN-01 16 29889674 29889674 G A SEZ6L2 Missense_Mutation p.P549L 0.47 tolerated(0.06) benign(0.069) TCGA-NC-A5HN-01 16 29997064 29997064 C T TAOK2 Missense_Mutation p.A625V 0.17 deleterious(0.01) possibly_damaging(0.636) TCGA-NC-A5HN-01 16 3021134 3021134 G A PAQR4 Intron 0.40 TCGA-NC-A5HN-01 16 30596491 30596491 C G ZNF785 Missense_Mutation p.D96H 0.15 deleterious(0) benign(0.007) TCGA-NC-A5HN-01 16 30990977 30990977 G T SETD1A Missense_Mutation p.R1290S 0.27 unknown(0) TCGA-NC-A5HN-01 16 31332607 31332607 C T ITGAM Nonsense_Mutation p.Q586* 0.20 TCGA-NC-A5HN-01 16 3613196 3613196 C A NLRC3 Missense_Mutation p.R628L 0.30 deleterious(0.01) benign(0.178) TCGA-NC-A5HN-01 16 51173302 51173302 A T SALL1 Missense_Mutation p.I944N 0.41 tolerated(0.19) benign(0.017) TCGA-NC-A5HN-01 16 51174326 51174326 T C SALL1 Missense_Mutation p.R603G 0.31 tolerated(0.31) benign(0.007) TCGA-NC-A5HN-01 16 53338137 53338137 A T CHD9 Silent p.I2073I 0.32 TCGA-NC-A5HN-01 16 68225524 68225524 G A NFATC3 Silent p.G984G 0.29 TCGA-NC-A5HN-01 16 70889151 70889151 A T HYDIN Missense_Mutation p.I4108N 0.26 possibly_damaging(0.891) TCGA-NC-A5HN-01 16 71601986 71601986 C A TAT 3'UTR 0.82 TCGA-NC-A5HN-01 16 80666958 80666958 C G CDYL2 Silent p.L264L 0.82 TCGA-NC-A5HN-01 16 81121264 81121264 C A GCSH Silent p.A78A 0.31 TCGA-NC-A5HN-01 16 845779 845779 T C CHTF18 Missense_Mutation p.L757P 0.21 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HN-01 16 85954909 85954910 - C IRF8 3'UTR 0.28 TCGA-NC-A5HN-01 16 90001655 90001655 T C TUBB3 Missense_Mutation p.F266L 0.37 deleterious_low_confidence(0.01) benign(0.366) TCGA-NC-A5HN-01 17 10355396 10355396 G T MYH4 Missense_Mutation p.H1200Q 0.84 tolerated(0.27) benign(0.006) TCGA-NC-A5HN-01 17 10408547 10408547 T A MYH1 Missense_Mutation p.T790S 0.39 deleterious(0.04) benign(0.004) TCGA-NC-A5HN-01 17 15492353 15492353 C A CDRT1 Missense_Mutation p.G732V 0.21 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-NC-A5HN-01 17 21205532 21205532 G T MAP2K3 Missense_Mutation p.M159I 0.10 tolerated(0.3) benign(0.001) TCGA-NC-A5HN-01 17 25930894 25930894 T A KSR1 Silent p.P400P 0.27 TCGA-NC-A5HN-01 17 26960752 26960752 T A KIAA0100 Missense_Mutation p.T1094S 0.26 tolerated(0.18) probably_damaging(0.93) TCGA-NC-A5HN-01 17 28601161 28601161 C G BLMH Missense_Mutation p.E234Q 0.27 tolerated(0.06) probably_damaging(0.999) TCGA-NC-A5HN-01 17 33521393 33521393 G A SLC35G3 5'UTR 0.53 TCGA-NC-A5HN-01 17 37417630 37417630 G C FBXL20 3'UTR 0.30 TCGA-NC-A5HN-01 17 38978374 38978374 T A KRT10 Missense_Mutation p.D155V 0.28 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HN-01 17 39595525 39595525 T C KRT38 Missense_Mutation p.K221R 0.31 tolerated(0.21) probably_damaging(0.953) TCGA-NC-A5HN-01 17 40937184 40937184 C T WNK4 Missense_Mutation p.R414C 0.39 deleterious(0.04) unknown(0) TCGA-NC-A5HN-01 17 41180167 41180167 G A RND2 Silent p.L130L 0.08 TCGA-NC-A5HN-01 17 41561340 41561340 T C DHX8 5'UTR 0.36 TCGA-NC-A5HN-01 17 62018556 62018556 C A SCN4A Missense_Mutation p.A1696S 0.60 tolerated(0.3) benign(0.141) TCGA-NC-A5HN-01 17 65147238 65147238 T A HELZ Missense_Mutation p.E760D 0.23 tolerated(0.11) possibly_damaging(0.462) TCGA-NC-A5HN-01 17 67075161 67075161 C G ABCA6 Missense_Mutation p.D1603H 0.08 deleterious(0.04) possibly_damaging(0.624) TCGA-NC-A5HN-01 17 73922866 73922866 T A FBF1 Nonsense_Mutation p.K176* 0.50 TCGA-NC-A5HN-01 17 7577120 7577120 C G TP53 Missense_Mutation p.R273P 0.86 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HN-01 18 21209901 21209901 G A ANKRD29 Silent p.A148A 0.23 TCGA-NC-A5HN-01 18 2578011 2578011 C T NDC80 Missense_Mutation p.S116F 0.27 deleterious(0) benign(0.371) TCGA-NC-A5HN-01 18 28722053 28722053 G A DSC1 Missense_Mutation p.A390V 0.24 deleterious(0.01) probably_damaging(0.954) TCGA-NC-A5HN-01 18 29205450 29205450 T G B4GALT6 3'UTR 0.39 TCGA-NC-A5HN-01 18 33289685 33289685 G A GALNT1 Missense_Mutation p.R544Q 0.50 tolerated(0.5) benign(0.006) TCGA-NC-A5HN-01 18 34289080 34289080 C T FHOD3 Silent p.P578P 0.35 TCGA-NC-A5HN-01 18 346427 346427 G T COLEC12 Missense_Mutation p.L399I 0.23 deleterious(0.01) possibly_damaging(0.899) TCGA-NC-A5HN-01 18 346428 346428 A C COLEC12 Silent p.S398S 0.24 TCGA-NC-A5HN-01 18 50589808 50589808 T A DCC Silent p.P373P 0.34 TCGA-NC-A5HN-01 18 50683864 50683864 C A DCC Missense_Mutation p.S467Y 0.61 deleterious(0) probably_damaging(0.989) TCGA-NC-A5HN-01 18 54694313 54694313 C - WDR7 Frame_Shift_Del p.P1451Lfs*54 0.30 TCGA-NC-A5HN-01 18 56363704 56363704 C T MALT1 Silent p.F161F 0.47 TCGA-NC-A5HN-01 18 5891602 5891602 C T TMEM200C Missense_Mutation p.R154H 0.30 tolerated(0.09) probably_damaging(0.991) TCGA-NC-A5HN-01 18 67759938 67759938 C A RTTN Nonsense_Mutation p.E1336* 0.47 TCGA-NC-A5HN-01 18 74962786 74962786 C A GALR1 Silent p.T94T 0.37 TCGA-NC-A5HN-01 18 77659459 77659459 C A KCNG2 Silent p.G348G 0.25 TCGA-NC-A5HN-01 19 13988492 13988492 C T NANOS3 Nonsense_Mutation p.R144* 0.25 TCGA-NC-A5HN-01 19 14877073 14877073 T C EMR2 Missense_Mutation p.N203S 0.28 tolerated(0.15) benign(0.156) TCGA-NC-A5HN-01 19 16860896 16860896 G T NWD1 Silent p.R481R 0.28 TCGA-NC-A5HN-01 19 16918422 16918422 C T NWD1 Silent p.T1254T 0.23 TCGA-NC-A5HN-01 19 19339247 19339247 G T NCAN Nonsense_Mutation p.E940* 0.32 TCGA-NC-A5HN-01 19 22363153 22363155 TGC GG ZNF676 Frame_Shift_Del p.G455Afs*43 0.18 TCGA-NC-A5HN-01 19 23406281 23406281 G A ZNF724P Missense_Mutation p.R256C 0.75 tolerated(1) benign(0) TCGA-NC-A5HN-01 19 23927648 23927648 C G ZNF681 Missense_Mutation p.C235S 0.29 deleterious(0.01) unknown(0) TCGA-NC-A5HN-01 19 24310315 24310315 C T ZNF254 Missense_Mutation p.L505F 0.09 tolerated(0.05) possibly_damaging(0.69) TCGA-NC-A5HN-01 19 31768610 31768610 G T TSHZ3 Missense_Mutation p.P697T 0.20 tolerated(0.3) benign(0.031) TCGA-NC-A5HN-01 19 33414364 33414364 C T CEP89 Missense_Mutation p.A417T 0.19 tolerated(0.5) benign(0.003) TCGA-NC-A5HN-01 19 36303266 36303266 T A PRODH2 Missense_Mutation p.S199C 0.04 deleterious(0.01) benign(0.353) TCGA-NC-A5HN-01 19 36509857 36509857 G T CLIP3 Silent p.R376R 0.21 TCGA-NC-A5HN-01 19 3747802 3747802 C T TJP3 Missense_Mutation p.S787F 0.21 deleterious(0.04) possibly_damaging(0.681) TCGA-NC-A5HN-01 19 37733538 37733538 C A ZNF383 Missense_Mutation p.P134T 0.27 deleterious(0.02) benign(0.008) TCGA-NC-A5HN-01 19 38126700 38126700 C T ZFP30 Missense_Mutation p.G248R 0.50 tolerated(0.07) probably_damaging(1) TCGA-NC-A5HN-01 19 38189390 38189390 G C ZNF607 Missense_Mutation p.L548V 0.27 deleterious(0.01) probably_damaging(0.992) TCGA-NC-A5HN-01 19 3821396 3821396 G T ZFR2 Missense_Mutation p.Q525K 0.34 deleterious(0.02) possibly_damaging(0.714) TCGA-NC-A5HN-01 19 39034171 39034171 G A RYR1 Splice_Site p.X3927_splice 0.34 TCGA-NC-A5HN-01 19 39226148 39226148 A G CAPN12 Silent p.S540S 0.15 TCGA-NC-A5HN-01 19 40354080 40354080 G A FCGBP 3'UTR 0.23 TCGA-NC-A5HN-01 19 40366304 40366304 C T FCGBP Missense_Mutation p.E4644K 0.30 benign(0.074) TCGA-NC-A5HN-01 19 4171688 4171688 C T CREB3L3 Missense_Mutation p.R370C 0.33 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HN-01 19 4231299 4231299 T C EBI3 Missense_Mutation p.V60A 0.45 tolerated(0.08) benign(0.009) TCGA-NC-A5HN-01 19 43433859 43433859 T C PSG7 Silent p.K148K 0.25 TCGA-NC-A5HN-01 19 44564634 44564634 A - ZNF223 Frame_Shift_Del p.V15Wfs*22 0.24 TCGA-NC-A5HN-01 19 47124761 47124761 C A PTGIR Missense_Mutation p.G313W 0.30 tolerated(0.19) benign(0.01) TCGA-NC-A5HN-01 19 48848556 48848556 G A TMEM143 Missense_Mutation p.T142M 0.21 deleterious(0) possibly_damaging(0.556) TCGA-NC-A5HN-01 19 51411885 51411885 G A KLK4 Missense_Mutation p.P142L 0.28 tolerated(0.37) possibly_damaging(0.725) TCGA-NC-A5HN-01 19 54783353 54783353 A T LILRB2 Missense_Mutation p.S169T 0.26 tolerated(0.07) possibly_damaging(0.606) TCGA-NC-A5HN-01 19 54973146 54973162 GCACCATTTGGAAGCTT - LENG8 3'UTR 0.21 TCGA-NC-A5HN-01 19 55250953 55250953 G T KIR2DL3 Missense_Mutation p.G12V 0.68 deleterious(0) possibly_damaging(0.662) TCGA-NC-A5HN-01 19 55344254 55344254 G T KIR3DL1 3'Flank 0.22 TCGA-NC-A5HN-01 19 56369569 56369569 C G NLRP4 Silent p.L270L 0.32 TCGA-NC-A5HN-01 19 57290841 57290841 C A ZIM2 Splice_Site p.X216_splice 0.28 TCGA-NC-A5HN-01 19 57765415 57765415 C G ZNF805 Missense_Mutation p.H410D 0.29 tolerated(0.21) possibly_damaging(0.906) TCGA-NC-A5HN-01 19 57911210 57911210 A G ZNF548 Missense_Mutation p.T531A 0.21 tolerated(0.6) benign(0.001) TCGA-NC-A5HN-01 19 59069662 59069662 C G UBE2M Silent p.A29A 0.16 TCGA-NC-A5HN-01 19 6454031 6454031 C T SLC25A23 Silent p.L288L 0.23 TCGA-NC-A5HN-01 19 8006002 8006002 G A TIMM44 Silent p.G42G 0.26 TCGA-NC-A5HN-01 1 102290757 102290757 C A OLFM3 Silent p.V139V 0.25 TCGA-NC-A5HN-01 1 110558063 110558063 G A AHCYL1 Missense_Mutation p.G231E 0.48 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HN-01 1 111969189 111969189 G T OVGP1 Missense_Mutation p.H44N 0.35 tolerated(0.28) benign(0.013) TCGA-NC-A5HN-01 1 112298536 112298536 G T DDX20 5'UTR 0.36 TCGA-NC-A5HN-01 1 113062907 113062907 C T WNT2B Silent p.L318L 0.90 TCGA-NC-A5HN-01 1 118642387 118642387 A G SPAG17 Missense_Mutation p.I224T 0.22 deleterious(0) possibly_damaging(0.843) TCGA-NC-A5HN-01 1 13669234 13669234 G C PRAMEF14 Missense_Mutation p.L366V 0.38 tolerated(0.16) benign(0.149) TCGA-NC-A5HN-01 1 145533938 145533938 C A ITGA10 Silent p.G528G 0.19 TCGA-NC-A5HN-01 1 145533939 145533939 C G ITGA10 Missense_Mutation p.Q529E 0.19 tolerated(0.8) possibly_damaging(0.554) TCGA-NC-A5HN-01 1 145560079 145560079 G T ANKRD35 Missense_Mutation p.A189S 0.28 deleterious(0) probably_damaging(0.918) TCGA-NC-A5HN-01 1 150479482 150479482 T G TARS2 Missense_Mutation p.V700G 0.31 deleterious(0) possibly_damaging(0.474) TCGA-NC-A5HN-01 1 151733295 151733295 C T MRPL9 Silent p.V223V 0.12 TCGA-NC-A5HN-01 1 152081020 152081020 C A TCHH Missense_Mutation p.R1558L 0.47 unknown(0) TCGA-NC-A5HN-01 1 152085158 152085158 C G TCHH Missense_Mutation p.E179Q 0.20 unknown(0) TCGA-NC-A5HN-01 1 152659513 152659513 A G LCE2B Missense_Mutation p.N65S 0.25 tolerated_low_confidence(0.78) unknown(0) TCGA-NC-A5HN-01 1 154931661 154931661 G A PYGO2 Missense_Mutation p.P272L 0.33 tolerated(0.28) benign(0.005) TCGA-NC-A5HN-01 1 156518538 156518538 C G IQGAP3 Missense_Mutation p.A610P 0.21 deleterious(0.01) probably_damaging(0.918) TCGA-NC-A5HN-01 1 156813017 156813017 G A INSRR Missense_Mutation p.P969S 0.26 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HN-01 1 157497593 157497593 C T FCRL5 Missense_Mutation p.G592S 0.56 deleterious(0) probably_damaging(1) TCGA-NC-A5HN-01 1 157801626 157801626 T A CD5L 3'UTR 0.29 TCGA-NC-A5HN-01 1 158262022 158262022 C T CD1C Silent p.A159A 0.26 TCGA-NC-A5HN-01 1 158450378 158450378 T C OR10R2 Silent p.S237S 0.07 TCGA-NC-A5HN-01 1 158576690 158576690 C A OR10Z1 Silent p.L154L 0.43 TCGA-NC-A5HN-01 1 160282916 160282916 C T COPA Nonsense_Mutation p.W295* 0.24 TCGA-NC-A5HN-01 1 160324076 160324076 A T NCSTN Missense_Mutation p.N450Y 0.17 deleterious(0) probably_damaging(1) TCGA-NC-A5HN-01 1 160607204 160607204 G T SLAMF1 Silent p.V64V 0.23 TCGA-NC-A5HN-01 1 160850479 160850479 C A ITLN1 Missense_Mutation p.G195V 0.12 deleterious(0.03) probably_damaging(0.959) TCGA-NC-A5HN-01 1 161160975 161160975 G C ADAMTS4 Missense_Mutation p.Q823E 0.18 tolerated(0.27) benign(0.001) TCGA-NC-A5HN-01 1 161681902 161681902 G C FCRLA Missense_Mutation p.Q249H 0.21 deleterious(0.03) probably_damaging(0.964) TCGA-NC-A5HN-01 1 161954023 161954023 G C OLFML2B Silent p.G565G 0.23 TCGA-NC-A5HN-01 1 166905907 166905907 C A ILDR2 Missense_Mutation p.W208C 0.08 deleterious(0) probably_damaging(1) TCGA-NC-A5HN-01 1 166927119 166927119 G A ILDR2 Missense_Mutation p.P89L 0.19 deleterious(0) probably_damaging(0.948) TCGA-NC-A5HN-01 1 17084322 17084322 G T MST1L RNA 0.15 TCGA-NC-A5HN-01 1 173726297 173726297 A G KLHL20 Missense_Mutation p.R384G 0.22 tolerated(0.33) probably_damaging(0.909) TCGA-NC-A5HN-01 1 175046615 175046615 G C TNN Missense_Mutation p.V21L 0.26 tolerated(0.16) benign(0.118) TCGA-NC-A5HN-01 1 177249695 177249695 C A BRINP2 Silent p.G461G 0.24 TCGA-NC-A5HN-01 1 178359299 178359299 C T RASAL2 Silent p.P174P 0.05 TCGA-NC-A5HN-01 1 178820280 178820282 ATC - ANGPTL1 In_Frame_Del p.M486del 0.36 TCGA-NC-A5HN-01 1 179564769 179564769 T C TDRD5 Missense_Mutation p.I216T 0.45 tolerated(0.13) benign(0.008) TCGA-NC-A5HN-01 1 197025000 197025000 G A F13B Missense_Mutation p.P400L 0.16 deleterious(0.02) probably_damaging(0.981) TCGA-NC-A5HN-01 1 197316481 197316481 A T CRB1 Missense_Mutation p.N287I 0.32 tolerated(0.13) benign(0.04) TCGA-NC-A5HN-01 1 197396937 197396937 G T CRB1 Missense_Mutation p.D828Y 0.33 deleterious(0) possibly_damaging(0.907) TCGA-NC-A5HN-01 1 209796475 209796475 C T LAMB3 Missense_Mutation p.G803D 0.21 deleterious(0.01) probably_damaging(1) TCGA-NC-A5HN-01 1 212799158 212799158 T A FAM71A Silent p.A313A 0.27 TCGA-NC-A5HN-01 1 212870367 212870367 T C BATF3 Missense_Mutation p.K44R 0.41 deleterious(0.02) probably_damaging(0.996) TCGA-NC-A5HN-01 1 217947873 217947873 A T SPATA17 Missense_Mutation p.Q239H 0.21 deleterious(0.01) benign(0.23) TCGA-NC-A5HN-01 1 218578519 218578519 C T TGFB2 Missense_Mutation p.P147S 0.29 tolerated(1) benign(0.009) TCGA-NC-A5HN-01 1 220331203 220331203 C T RAB3GAP2 Missense_Mutation p.D1093N 0.10 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HN-01 1 220835507 220835507 A G MARK1 Silent p.%3D 0.46 TCGA-NC-A5HN-01 1 224437990 224437990 C T NVL Missense_Mutation p.G738D 0.35 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HN-01 1 228109564 228109564 G C WNT9A Silent p.L251L 0.05 TCGA-NC-A5HN-01 1 228447238 228447238 A T OBSCN Missense_Mutation p.H1633L 0.31 benign(0.024) TCGA-NC-A5HN-01 1 2288938 2288938 G A MORN1 Silent p.P323P 0.40 TCGA-NC-A5HN-01 1 231409795 231409795 T C GNPAT Missense_Mutation p.V577A 0.10 deleterious(0.01) benign(0.41) TCGA-NC-A5HN-01 1 23419329 23419329 G A LUZP1 Missense_Mutation p.R476C 0.45 deleterious(0) probably_damaging(1) TCGA-NC-A5HN-01 1 24384010 24384010 C A MYOM3 Missense_Mutation p.R1386S 0.49 tolerated(0.1) benign(0.065) TCGA-NC-A5HN-01 1 247587819 247587819 G A NLRP3 Silent p.L358L 0.31 TCGA-NC-A5HN-01 1 247712498 247712498 G A GCSAML Missense_Mutation p.G2E 0.29 deleterious(0.01) probably_damaging(0.988) TCGA-NC-A5HN-01 1 247875253 247875253 C G OR6F1 Missense_Mutation p.D269H 0.36 deleterious(0.01) probably_damaging(0.938) TCGA-NC-A5HN-01 1 248308685 248308685 C A OR2M5 Missense_Mutation p.P79H 0.30 deleterious(0) probably_damaging(0.98) TCGA-NC-A5HN-01 1 248308686 248308686 C A OR2M5 Silent p.P79P 0.29 TCGA-NC-A5HN-01 1 248637482 248637482 G T OR2T3 Missense_Mutation p.M277I 0.14 tolerated(0.05) benign(0.005) TCGA-NC-A5HN-01 1 3102708 3102708 T A PRDM16 Missense_Mutation p.N19K 0.34 tolerated_low_confidence(0.1) benign(0.016) TCGA-NC-A5HN-01 1 31532326 31532326 C G PUM1 Missense_Mutation p.A30P 0.32 tolerated_low_confidence(0.15) benign(0.04) TCGA-NC-A5HN-01 1 36288512 36288512 G T AGO4 Missense_Mutation p.D79Y 0.24 deleterious(0.01) benign(0.438) TCGA-NC-A5HN-01 1 36558026 36558026 G T ADPRHL2 Missense_Mutation p.L235F 0.83 tolerated(0.07) benign(0.039) TCGA-NC-A5HN-01 1 47606476 47606476 C T CYP4A22 Missense_Mutation p.R74W 0.10 tolerated(0.05) benign(0.013) TCGA-NC-A5HN-01 1 61743233 61743233 G A NFIA Missense_Mutation p.D246N 0.30 deleterious(0.01) probably_damaging(0.987) TCGA-NC-A5HN-01 1 62962071 62962071 T C DOCK7 Missense_Mutation p.K1590R 0.38 tolerated(0.37) benign(0.175) TCGA-NC-A5HN-01 1 64608244 64608244 G A ROR1 Missense_Mutation p.C362Y 0.44 deleterious(0) probably_damaging(1) TCGA-NC-A5HN-01 1 66070810 66070810 G A LEPR Missense_Mutation p.C498Y 0.48 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HN-01 1 67861417 67861417 A G IL12RB2 Missense_Mutation p.H745R 0.41 tolerated(0.34) benign(0.004) TCGA-NC-A5HN-01 1 78097659 78097659 G A ZZZ3 Missense_Mutation p.L461F 0.36 tolerated(0.13) benign(0.005) TCGA-NC-A5HN-01 1 84403583 84403583 G T TTLL7 Missense_Mutation p.F280L 0.27 tolerated(0.06) probably_damaging(0.932) TCGA-NC-A5HN-01 1 84403584 84403584 A T TTLL7 Missense_Mutation p.F280Y 0.27 tolerated(0.56) benign(0.401) TCGA-NC-A5HN-01 20 1285626 1285626 C T SNPH Missense_Mutation p.A138V 0.55 deleterious(0) probably_damaging(1) TCGA-NC-A5HN-01 20 13765819 13765819 C T NDUFAF5 Silent p.P35P 0.32 TCGA-NC-A5HN-01 20 139523 139523 G A DEFB127 Missense_Mutation p.C53Y 0.43 deleterious(0) probably_damaging(0.967) TCGA-NC-A5HN-01 20 14307368 14307368 A T FLRT3 Missense_Mutation p.V262E 0.27 deleterious(0) possibly_damaging(0.632) TCGA-NC-A5HN-01 20 15948225 15948225 A T MACROD2 Missense_Mutation p.K312I 0.62 deleterious_low_confidence(0) possibly_damaging(0.506) TCGA-NC-A5HN-01 20 25257371 25257371 C G PYGB Silent p.P250P 0.48 TCGA-NC-A5HN-01 20 26084225 26084225 G C NCOR1P1 RNA 0.21 TCGA-NC-A5HN-01 20 31294524 31294524 C A COMMD7 Missense_Mutation p.A94S 0.23 tolerated(0.49) benign(0.297) TCGA-NC-A5HN-01 20 31294525 31294525 C A COMMD7 Missense_Mutation p.Q93H 0.23 tolerated(0.1) possibly_damaging(0.489) TCGA-NC-A5HN-01 20 3145130 3145130 G A LZTS3 Silent p.R664R 0.15 TCGA-NC-A5HN-01 20 31890791 31890791 G A BPIFB1 Missense_Mutation p.D351N 0.15 tolerated(0.44) benign(0.026) TCGA-NC-A5HN-01 20 35284810 35284810 C T NDRG3 Missense_Mutation p.G300E 0.26 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HN-01 20 42089569 42089569 T C SRSF6 Missense_Mutation p.S301P 0.51 deleterious_low_confidence(0.01) benign(0.184) TCGA-NC-A5HN-01 20 51872866 51872866 A G TSHZ2 Missense_Mutation p.T957A 0.38 tolerated(0.55) benign(0.174) TCGA-NC-A5HN-01 20 56886126 56886126 G T RAB22A Missense_Mutation p.V22L 0.46 deleterious(0.02) possibly_damaging(0.791) TCGA-NC-A5HN-01 20 57226981 57226981 C A STX16 5'UTR 0.10 TCGA-NC-A5HN-01 20 61296403 61296403 G C SLCO4A1 Missense_Mutation p.Q413H 0.37 deleterious(0) probably_damaging(0.965) TCGA-NC-A5HN-01 20 62729977 62729977 G T OPRL1 Missense_Mutation p.C313F 0.28 deleterious(0) benign(0.373) TCGA-NC-A5HN-01 20 8678399 8678399 G T PLCB1 Missense_Mutation p.G379V 0.17 deleterious(0) probably_damaging(1) TCGA-NC-A5HN-01 20 9496755 9496755 G T LAMP5 Missense_Mutation p.A116S 0.19 tolerated(0.34) benign(0.002) TCGA-NC-A5HN-01 21 10998267 10998267 T G TPTE RNA 0.12 TCGA-NC-A5HN-01 21 11097566 11097566 C A BAGE2 RNA 0.06 TCGA-NC-A5HN-01 21 28305325 28305325 C A ADAMTS5 Missense_Mutation p.W576C 0.31 deleterious(0) probably_damaging(1) TCGA-NC-A5HN-01 21 31538329 31538329 G A CLDN17 Missense_Mutation p.R203C 0.45 tolerated(0.24) benign(0) TCGA-NC-A5HN-01 21 39426962 39426962 C A DSCR4 Missense_Mutation p.S115I 0.24 possibly_damaging(0.607) TCGA-NC-A5HN-01 21 39580303 39580303 G T DSCR10 RNA 0.23 TCGA-NC-A5HN-01 21 40795397 40795397 A G LCA5L Silent p.V114V 0.66 TCGA-NC-A5HN-01 21 45732924 45732924 C G PFKL Missense_Mutation p.S164C 0.30 deleterious(0) probably_damaging(0.991) TCGA-NC-A5HN-01 22 17488851 17488851 C T GAB4 Missense_Mutation p.E52K 0.28 deleterious(0.02) possibly_damaging(0.635) TCGA-NC-A5HN-01 22 22735513 22735513 T G IGLV1-44 Missense_Mutation p.S50R 0.19 tolerated_low_confidence(0.1) benign(0.003) TCGA-NC-A5HN-01 22 22843106 22843106 A G ZNF280B Silent p.D206D 0.30 TCGA-NC-A5HN-01 22 24640695 24640695 G T GGT5 5'UTR 0.27 TCGA-NC-A5HN-01 22 25294010 25294010 C G SGSM1 Missense_Mutation p.I753M 0.48 tolerated(0.27) benign(0.004) TCGA-NC-A5HN-01 22 26423569 26423569 C T MYO18B Silent p.P2543P 0.33 TCGA-NC-A5HN-01 22 30772807 30772807 G A CCDC157 3'UTR 0.50 TCGA-NC-A5HN-01 22 32555090 32555090 G T C22orf42 Missense_Mutation p.A38D 0.44 deleterious_low_confidence(0) possibly_damaging(0.82) TCGA-NC-A5HN-01 22 32587150 32587150 G T RFPL2 Missense_Mutation p.T249K 0.28 tolerated(0.23) possibly_damaging(0.78) TCGA-NC-A5HN-01 22 37465129 37465129 G A TMPRSS6 Silent p.G708G 0.57 TCGA-NC-A5HN-01 22 41252478 41252478 G A ST13 Silent p.L23L 0.34 TCGA-NC-A5HN-01 22 42126633 42126633 C A MEI1 Missense_Mutation p.T363K 0.35 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HN-01 2 11770088 11770088 C A GREB1 Silent p.T1488T 0.38 TCGA-NC-A5HN-01 2 120124572 120124572 C A DBI 5'Flank 0.29 TCGA-NC-A5HN-01 2 122522904 122522904 C A TSN Silent p.G216G 0.22 TCGA-NC-A5HN-01 2 128050318 128050318 C G ERCC3 Silent p.V113V 0.09 TCGA-NC-A5HN-01 2 135199364 135199364 C T MGAT5 Silent p.L635L 0.22 TCGA-NC-A5HN-01 2 145147053 145147053 C A ZEB2 Missense_Mutation p.D1204Y 0.13 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-NC-A5HN-01 2 1457508 1457508 A G TPO Silent p.R175R 0.20 TCGA-NC-A5HN-01 2 149220217 149220217 C T MBD5 Silent p.C60C 0.19 TCGA-NC-A5HN-01 2 149837906 149837906 A C KIF5C Missense_Mutation p.Q467P 0.12 deleterious(0) probably_damaging(0.99) TCGA-NC-A5HN-01 2 15374853 15374853 T C NBAS Missense_Mutation p.S1988G 0.12 tolerated(0.44) benign(0) TCGA-NC-A5HN-01 2 155098542 155098542 G A GALNT13 Splice_Site p.X104_splice 0.17 TCGA-NC-A5HN-01 2 160289352 160289352 C T BAZ2B Missense_Mutation p.D606N 0.12 possibly_damaging(0.539) TCGA-NC-A5HN-01 2 163228393 163228393 T A KCNH7 Silent p.V1179V 0.77 TCGA-NC-A5HN-01 2 164465975 164465975 C T FIGN 3'UTR 0.25 TCGA-NC-A5HN-01 2 166201134 166201134 G T SCN2A Missense_Mutation p.V878L 0.20 tolerated(0.09) possibly_damaging(0.596) TCGA-NC-A5HN-01 2 166859067 166859067 A G SCN1A Missense_Mutation p.I1400T 0.17 tolerated(0.47) benign(0.102) TCGA-NC-A5HN-01 2 166903361 166903361 G A SCN1A Silent p.A432A 0.13 TCGA-NC-A5HN-01 2 168105997 168105997 C G XIRP2 Missense_Mutation p.P2699A 0.11 benign(0.228) TCGA-NC-A5HN-01 2 170002343 170002343 C A LRP2 Missense_Mutation p.G4301V 0.10 probably_damaging(1) TCGA-NC-A5HN-01 2 170002344 170002344 C T LRP2 Missense_Mutation p.G4301R 0.10 probably_damaging(1) TCGA-NC-A5HN-01 2 170063000 170063000 T G LRP2 Silent p.P2410P 0.09 TCGA-NC-A5HN-01 2 170361450 170361450 A C BBS5 3'UTR 0.11 TCGA-NC-A5HN-01 2 171240273 171240273 T C MYO3B Silent p.F413F 0.12 TCGA-NC-A5HN-01 2 174055853 174055853 T G MLTK Missense_Mutation p.V177G 0.17 deleterious(0) possibly_damaging(0.828) TCGA-NC-A5HN-01 2 175436599 175436599 G C WIPF1 Missense_Mutation p.P312A 0.12 tolerated(0.25) probably_damaging(0.971) TCGA-NC-A5HN-01 2 176844549 176844549 G A KIAA1715 Missense_Mutation p.T102I 0.23 tolerated(0.2) benign(0.138) TCGA-NC-A5HN-01 2 176957876 176957876 C A HOXD13 Silent p.S86S 0.69 TCGA-NC-A5HN-01 2 176981677 176981677 C G HOXD10 Missense_Mutation p.P39R 0.10 tolerated(0.1) probably_damaging(0.957) TCGA-NC-A5HN-01 2 178402974 178402974 A T AGPS 3'UTR 0.23 TCGA-NC-A5HN-01 2 178481527 178481527 C T TTC30A Missense_Mutation p.E635K 0.14 tolerated(0.06) benign(0.217) TCGA-NC-A5HN-01 2 178528592 178528592 A C PDE11A Splice_Site p.X882_splice 0.16 TCGA-NC-A5HN-01 2 179430759 179430759 G T TTN Silent p.A26700A 0.18 TCGA-NC-A5HN-01 2 179472243 179472243 T C TTN Silent p.G17724G 0.13 TCGA-NC-A5HN-01 2 179485256 179485256 G A TTN Missense_Mutation p.T15331I 0.10 TCGA-NC-A5HN-01 2 179595316 179595316 C T TTN Missense_Mutation p.E5982K 0.33 TCGA-NC-A5HN-01 2 179596863 179596863 A G TTN Silent p.S5611S 0.12 TCGA-NC-A5HN-01 2 183791611 183791611 T A NCKAP1 Missense_Mutation p.K1074I 0.18 deleterious(0) possibly_damaging(0.615) TCGA-NC-A5HN-01 2 183832022 183832022 T C NCKAP1 Missense_Mutation p.N523S 0.13 deleterious(0.02) benign(0.133) TCGA-NC-A5HN-01 2 183902774 183902774 G A NCKAP1 Silent p.T18T 0.14 TCGA-NC-A5HN-01 2 185801500 185801500 T A ZNF804A Silent p.P459P 0.12 TCGA-NC-A5HN-01 2 185803510 185803510 A T ZNF804A Missense_Mutation p.Q1129H 0.14 deleterious(0.01) probably_damaging(0.969) TCGA-NC-A5HN-01 2 187703783 187703783 C T ZSWIM2 Missense_Mutation p.D133N 0.10 deleterious(0.03) possibly_damaging(0.611) TCGA-NC-A5HN-01 2 190531717 190531717 A T ASNSD1 Missense_Mutation p.I287F 0.10 deleterious(0) possibly_damaging(0.781) TCGA-NC-A5HN-01 2 191302088 191302088 G T MFSD6 Missense_Mutation p.V445L 0.29 tolerated(0.42) benign(0.044) TCGA-NC-A5HN-01 2 196729656 196729656 C A DNAH7 Missense_Mutation p.M2241I 0.15 deleterious(0) benign(0.064) TCGA-NC-A5HN-01 2 197184482 197184482 C A HECW2 Missense_Mutation p.A378S 0.12 tolerated_low_confidence(1) benign(0.01) TCGA-NC-A5HN-01 2 201685956 201685956 G T BZW1 Missense_Mutation p.V418F 0.20 tolerated(0.15) benign(0.195) TCGA-NC-A5HN-01 2 202263057 202263057 C A TRAK2 Missense_Mutation p.E167D 0.15 tolerated(0.15) probably_damaging(0.999) TCGA-NC-A5HN-01 2 215876814 215876814 C T ABCA12 Missense_Mutation p.E668K 0.71 tolerated(0.53) benign(0.003) TCGA-NC-A5HN-01 2 218925027 218925027 A G CXCR2P1 RNA 0.55 TCGA-NC-A5HN-01 2 219257786 219257786 C T SLC11A1 Missense_Mutation p.A416V 0.60 deleterious(0.02) benign(0.247) TCGA-NC-A5HN-01 2 223168768 223168768 T G CCDC140 Silent p.T49T 0.38 TCGA-NC-A5HN-01 2 233348798 233348798 G T ECEL1 Silent p.V440V 0.39 TCGA-NC-A5HN-01 2 241447068 241447082 AGGTTGGGGTCAGCT - ANKMY1 In_Frame_Del p.A719_L723del 0.27 TCGA-NC-A5HN-01 2 24974998 24974998 G T NCOA1 Missense_Mutation p.W1285L 0.24 deleterious(0) probably_damaging(0.99) TCGA-NC-A5HN-01 2 25064434 25064434 C A ADCY3 Missense_Mutation p.K353N 0.14 deleterious(0) probably_damaging(1) TCGA-NC-A5HN-01 2 26688690 26688690 G T OTOF Missense_Mutation p.S1550Y 0.21 deleterious(0) benign(0.281) TCGA-NC-A5HN-01 2 30785065 30785065 G T LCLAT1 Missense_Mutation p.D178Y 0.14 deleterious(0) probably_damaging(0.991) TCGA-NC-A5HN-01 2 33335803 33335803 G C LTBP1 Missense_Mutation p.A340P 0.71 tolerated(0.15) benign(0.006) TCGA-NC-A5HN-01 2 3743399 3743399 G T ALLC Missense_Mutation p.A202S 0.65 tolerated(0.57) benign(0.04) TCGA-NC-A5HN-01 2 40342401 40342401 C T SLC8A1 Missense_Mutation p.G972S 0.22 deleterious(0.03) possibly_damaging(0.725) TCGA-NC-A5HN-01 2 40655665 40655665 C T SLC8A1 Missense_Mutation p.E586K 0.24 tolerated(0.61) benign(0.241) TCGA-NC-A5HN-01 2 51254883 51254883 G A NRXN1 Missense_Mutation p.R177W 0.19 deleterious(0) possibly_damaging(0.54) TCGA-NC-A5HN-01 2 63631402 63631402 T C WDPCP Missense_Mutation p.M406V 0.15 tolerated(0.56) benign(0.196) TCGA-NC-A5HN-01 2 68613735 68613735 C G PLEK Missense_Mutation p.P192A 0.18 tolerated(0.1) benign(0.094) TCGA-NC-A5HN-01 2 69399520 69399520 G T ANTXR1 Intron 0.24 TCGA-NC-A5HN-01 2 71740854 71740854 G T DYSF Nonsense_Mutation p.G188* 0.88 TCGA-NC-A5HN-01 2 74328272 74328272 G A TET3 Missense_Mutation p.G1318S 0.17 tolerated(0.56) benign(0.006) TCGA-NC-A5HN-01 2 80101245 80101245 G A CTNNA2 Missense_Mutation p.R210Q 0.24 deleterious(0) probably_damaging(1) TCGA-NC-A5HN-01 2 88425791 88425791 G C FABP1 Missense_Mutation p.F48L 0.18 deleterious(0) possibly_damaging(0.685) TCGA-NC-A5HN-01 2 8871760 8871760 T A KIDINS220 Missense_Mutation p.D1469V 0.17 deleterious_low_confidence(0) possibly_damaging(0.557) TCGA-NC-A5HN-01 2 8931231 8931231 T A KIDINS220 Missense_Mutation p.Q467L 0.25 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HN-01 2 90078236 90078236 C G IGKV3D-20 Missense_Mutation p.D91E 0.90 tolerated(0.08) benign(0.029) TCGA-NC-A5HN-01 2 90109061 90109061 A T IGKV6D-41 Missense_Mutation p.Q109L 0.12 tolerated(0.21) benign(0.027) TCGA-NC-A5HN-01 2 90259963 90259963 T C IGKV1D-8 Silent p.C22C 0.15 TCGA-NC-A5HN-01 2 96040080 96040080 G A KCNIP3 Missense_Mutation p.R73H 0.34 deleterious(0.03) possibly_damaging(0.891) TCGA-NC-A5HN-01 3 107520028 107520028 G T BBX Missense_Mutation p.V880F 0.21 deleterious(0.01) benign(0.054) TCGA-NC-A5HN-01 3 108287030 108287030 C G KIAA1524 Missense_Mutation p.R415S 0.14 deleterious(0) probably_damaging(0.917) TCGA-NC-A5HN-01 3 109049565 109049565 T G DPPA4 Missense_Mutation p.E162A 0.19 tolerated(0.7) benign(0.034) TCGA-NC-A5HN-01 3 11068007 11068007 A G SLC6A1 Missense_Mutation p.H347R 0.35 tolerated(0.09) benign(0.261) TCGA-NC-A5HN-01 3 111993742 111993742 A T SLC9C1 Splice_Site p.X205_splice 0.17 TCGA-NC-A5HN-01 3 113145065 113145065 T C WDR52 Missense_Mutation p.I105V 0.25 tolerated(0.06) possibly_damaging(0.894) TCGA-NC-A5HN-01 3 113345055 113345055 C A SIDT1 Nonsense_Mutation p.S805* 0.23 TCGA-NC-A5HN-01 3 113858360 113858360 C G DRD3 Missense_Mutation p.G237A 0.21 tolerated(0.61) benign(0.005) TCGA-NC-A5HN-01 3 121395812 121395812 G C GOLGB1 Silent p.L3035L 0.11 TCGA-NC-A5HN-01 3 122003194 122003194 C A CASR Missense_Mutation p.P808Q 0.33 deleterious(0) probably_damaging(1) TCGA-NC-A5HN-01 3 122437471 122437471 G C PARP14 Missense_Mutation p.K1491N 0.16 tolerated(0.13) benign(0.129) TCGA-NC-A5HN-01 3 123813659 123813659 G A KALRN 5'UTR 0.10 TCGA-NC-A5HN-01 3 1262485 1262485 C A CNTN6 Nonsense_Mutation p.S57* 0.39 TCGA-NC-A5HN-01 3 127323794 127323794 G A MCM2 Silent p.R156R 0.19 TCGA-NC-A5HN-01 3 127399594 127399594 T C ABTB1 3'UTR 0.24 TCGA-NC-A5HN-01 3 141011417 141011417 G A ACPL2 Silent p.L271L 0.12 TCGA-NC-A5HN-01 3 148460087 148460087 G A AGTR1 3'UTR 0.25 TCGA-NC-A5HN-01 3 149192677 149192677 G C TM4SF4 Missense_Mutation p.G5R 0.11 tolerated(0.36) benign(0.01) TCGA-NC-A5HN-01 3 152880645 152880645 A G RAP2B Missense_Mutation p.I55V 0.45 tolerated(0.12) probably_damaging(0.995) TCGA-NC-A5HN-01 3 158288962 158288962 G A MLF1 5'Flank 0.45 TCGA-NC-A5HN-01 3 164733772 164733772 T A SI Nonsense_Mutation p.R1286* 0.21 TCGA-NC-A5HN-01 3 164764644 164764644 C A SI Missense_Mutation p.L624F 0.20 deleterious(0) possibly_damaging(0.654) TCGA-NC-A5HN-01 3 164906060 164906060 A T SLITRK3 Silent p.T853T 0.13 TCGA-NC-A5HN-01 3 164908198 164908213 TGAAGACATCTAGTTT - SLITRK3 Frame_Shift_Del p.K136Efs*11 0.20 TCGA-NC-A5HN-01 3 170715663 170715663 T C SLC2A2 3'UTR 0.13 TCGA-NC-A5HN-01 3 183551359 183551359 C A PARL Missense_Mutation p.A317S 0.12 tolerated(0.06) possibly_damaging(0.57) TCGA-NC-A5HN-01 3 183824354 183824354 C G HTR3E Missense_Mutation p.A441G 0.13 tolerated(0.05) possibly_damaging(0.568) TCGA-NC-A5HN-01 3 192635640 192635640 C A MB21D2 5'UTR 0.17 TCGA-NC-A5HN-01 3 193332670 193332670 C G OPA1 Missense_Mutation p.S64C 0.34 deleterious(0.01) probably_damaging(0.912) TCGA-NC-A5HN-01 3 195937521 195937521 T A ZDHHC19 Silent p.S78S 0.38 TCGA-NC-A5HN-01 3 196674823 196674835 GAGCCGCGCGTGC - PIGZ Frame_Shift_Del p.H312Lfs*39 0.12 TCGA-NC-A5HN-01 3 38012957 38012957 T G CTDSPL Missense_Mutation p.F162L 0.47 deleterious(0) possibly_damaging(0.737) TCGA-NC-A5HN-01 3 39125724 39125724 A C WDR48 Missense_Mutation p.N418H 0.27 tolerated(0.07) benign(0.316) TCGA-NC-A5HN-01 3 42916203 42916203 G T CYP8B1 Missense_Mutation p.S369Y 0.38 deleterious(0.03) benign(0.237) TCGA-NC-A5HN-01 3 42917206 42917206 G T CYP8B1 Missense_Mutation p.L35M 0.40 deleterious(0) probably_damaging(1) TCGA-NC-A5HN-01 3 48338316 48338316 C A NME6 Missense_Mutation p.V40F 0.48 deleterious(0) possibly_damaging(0.737) TCGA-NC-A5HN-01 3 50005961 50005961 A G RBM6 Missense_Mutation p.D368G 0.35 tolerated(0.06) benign(0.201) TCGA-NC-A5HN-01 3 89445001 89445001 C G EPHA3 Missense_Mutation p.L441V 0.36 tolerated(0.41) benign(0) TCGA-NC-A5HN-01 3 98002574 98002574 C A OR5H2 Silent p.V281V 0.17 TCGA-NC-A5HN-01 3 98251387 98251387 G C GPR15 Silent p.L170L 0.17 TCGA-NC-A5HN-01 4 108866555 108866555 A T CYP2U1 Missense_Mutation p.E307V 0.42 tolerated(0.07) benign(0.128) TCGA-NC-A5HN-01 4 110394320 110394320 A T SEC24B Silent p.P346P 0.31 TCGA-NC-A5HN-01 4 113362113 113362113 A G ALPK1 Silent p.T1193T 0.14 TCGA-NC-A5HN-01 4 113970937 113970937 G A ANK2 Missense_Mutation p.G18D 0.70 benign(0.392) TCGA-NC-A5HN-01 4 115997997 115997997 T A NDST4 Nonsense_Mutation p.K66* 0.39 TCGA-NC-A5HN-01 4 124323528 124323528 G A SPRY1 Missense_Mutation p.G261E 0.39 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HN-01 4 126240805 126240805 T A FAT4 Missense_Mutation p.L1080H 0.36 probably_damaging(0.994) TCGA-NC-A5HN-01 4 129886455 129886455 C A SCLT1 Missense_Mutation p.A266S 0.26 deleterious(0.04) possibly_damaging(0.453) TCGA-NC-A5HN-01 4 138442561 138442562 - G PCDH18 Frame_Shift_Ins p.V1011Cfs*15 0.26 TCGA-NC-A5HN-01 4 146076747 146076747 T C OTUD4 Missense_Mutation p.Y196C 0.33 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HN-01 4 146435918 146435918 G T SMAD1 Silent p.L51L 0.36 TCGA-NC-A5HN-01 4 147561439 147561439 C A POU4F2 Missense_Mutation p.H237N 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.775) TCGA-NC-A5HN-01 4 158074114 158074114 G T GLRB Missense_Mutation p.K383N 0.41 tolerated(0.53) benign(0.002) TCGA-NC-A5HN-01 4 166184358 166184358 C T KLHL2 Missense_Mutation p.P135S 0.72 tolerated(0.16) possibly_damaging(0.474) TCGA-NC-A5HN-01 4 169343051 169343051 G C DDX60L Missense_Mutation p.L752V 0.30 deleterious(0) probably_damaging(0.984) TCGA-NC-A5HN-01 4 187074877 187074877 C A FAM149A Silent p.V55V 0.44 TCGA-NC-A5HN-01 4 187192915 187192915 C A F11 Missense_Mutation p.P70T 0.08 tolerated(0.45) benign(0.193) TCGA-NC-A5HN-01 4 62758384 62758384 C A LPHN3 Silent p.T429T 0.10 TCGA-NC-A5HN-01 4 70866670 70866670 C T STATH 3'UTR 0.06 TCGA-NC-A5HN-01 4 72432787 72432787 C G SLC4A4 Missense_Mutation p.L1056V 0.32 tolerated(0.49) benign(0.004) TCGA-NC-A5HN-01 4 73148890 73148890 T C ADAMTS3 Missense_Mutation p.N1194S 0.39 deleterious_low_confidence(0.01) benign(0.005) TCGA-NC-A5HN-01 4 74308145 74308145 G T AFP Missense_Mutation p.K205N 0.09 deleterious(0) possibly_damaging(0.632) TCGA-NC-A5HN-01 4 77290741 77290741 C G CCDC158 Silent p.L395L 0.08 TCGA-NC-A5HN-01 4 88036362 88036362 G T AFF1 Missense_Mutation p.A793S 0.44 tolerated(0.48) unknown(0) TCGA-NC-A5HN-01 4 96761886 96761886 C T PDHA2 Silent p.G195G 0.29 TCGA-NC-A5HN-01 5 10258351 10258351 A G CCT5 Missense_Mutation p.E220G 0.17 tolerated(0.06) probably_damaging(0.93) TCGA-NC-A5HN-01 5 122154695 122154695 A G SNX2 Missense_Mutation p.I397V 0.77 tolerated(0.52) benign(0.003) TCGA-NC-A5HN-01 5 124080083 124080083 G C ZNF608 Silent p.G200G 0.44 TCGA-NC-A5HN-01 5 133914402 133914402 C T JADE2 Missense_Mutation p.P590S 0.28 tolerated(0.42) benign(0.057) TCGA-NC-A5HN-01 5 140181491 140181491 G A PCDHA3 Missense_Mutation p.D237N 0.39 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-NC-A5HN-01 5 140216041 140216041 C G PCDHA7 Silent p.T691T 0.31 TCGA-NC-A5HN-01 5 140250596 140250596 G A PCDHA11 Silent p.L636L 0.40 TCGA-NC-A5HN-01 5 140553509 140553509 G A PCDHB7 Missense_Mutation p.V365M 0.12 deleterious_low_confidence(0) possibly_damaging(0.783) TCGA-NC-A5HN-01 5 145609422 145609422 A G RBM27 Missense_Mutation p.R180G 0.44 deleterious(0) possibly_damaging(0.837) TCGA-NC-A5HN-01 5 145888709 145888709 A G TCERG1 Missense_Mutation p.K999R 0.24 deleterious(0.01) unknown(0) TCGA-NC-A5HN-01 5 150275693 150275693 T C ZNF300 Missense_Mutation p.I386V 0.50 tolerated(0.46) probably_damaging(0.948) TCGA-NC-A5HN-01 5 150924321 150924321 C T FAT2 Missense_Mutation p.G2123R 0.38 probably_damaging(1) TCGA-NC-A5HN-01 5 154308088 154308088 C A GEMIN5 Nonsense_Mutation p.G305* 0.43 TCGA-NC-A5HN-01 5 156592631 156592631 G T FAM71B Nonsense_Mutation p.C183* 0.38 TCGA-NC-A5HN-01 5 158158131 158158131 C A EBF1 Missense_Mutation p.Q357H 0.71 deleterious(0.01) benign(0.375) TCGA-NC-A5HN-01 5 176687055 176687055 G A NSD1 Missense_Mutation p.G1678R 0.87 deleterious(0) probably_damaging(1) TCGA-NC-A5HN-01 5 176916534 176916534 C T PDLIM7 Silent p.L243L 0.41 TCGA-NC-A5HN-01 5 19473189 19473189 C A CDH18 3'UTR 0.21 TCGA-NC-A5HN-01 5 21802447 21802447 G T CDH12 Missense_Mutation p.A362E 0.25 tolerated(0.22) benign(0.201) TCGA-NC-A5HN-01 5 23526574 23526574 G T PRDM9 Missense_Mutation p.R459S 0.13 tolerated(0.79) benign(0.063) TCGA-NC-A5HN-01 5 32089869 32089869 T C PDZD2 Silent p.C2105C 0.14 TCGA-NC-A5HN-01 5 35759741 35759741 C A SPEF2 Silent p.I1180I 0.18 TCGA-NC-A5HN-01 5 35776442 35776442 G A SPEF2 Missense_Mutation p.V1388I 0.14 tolerated(0.31) benign(0.017) TCGA-NC-A5HN-01 5 35991248 35991248 C T UGT3A1 Splice_Site p.X32_splice 0.14 TCGA-NC-A5HN-01 5 37370967 37370967 C G NUP155 Missense_Mutation p.R38P 0.14 deleterious(0.02) probably_damaging(0.935) TCGA-NC-A5HN-01 5 40681418 40681418 G A PTGER4 Missense_Mutation p.S108N 0.04 deleterious(0) possibly_damaging(0.739) TCGA-NC-A5HN-01 5 40947865 40947865 G T C7 Silent p.G300G 0.38 TCGA-NC-A5HN-01 5 41176625 41176625 C G C6 Missense_Mutation p.V374L 0.12 tolerated(0.48) benign(0.048) TCGA-NC-A5HN-01 5 43454144 43454144 C A C5orf28 Intron 0.11 TCGA-NC-A5HN-01 5 45262587 45262587 G A HCN1 Silent p.V703V 0.15 TCGA-NC-A5HN-01 5 45262679 45262679 G T HCN1 Missense_Mutation p.L673M 0.23 tolerated_low_confidence(0.13) benign(0.034) TCGA-NC-A5HN-01 5 45695935 45695935 G T HCN1 Silent p.P87P 0.21 TCGA-NC-A5HN-01 5 66461777 66461777 A G MAST4 Missense_Mutation p.Q2257R 0.46 benign(0.02) TCGA-NC-A5HN-01 5 70805893 70805893 A C BDP1 Missense_Mutation p.I992L 0.51 tolerated(0.16) benign(0.082) TCGA-NC-A5HN-01 5 82352908 82352908 G T TMEM167A Missense_Mutation p.Q72K 0.35 tolerated(0.09) benign(0.029) TCGA-NC-A5HN-01 5 82835960 82835960 C A VCAN Missense_Mutation p.Q2380K 0.33 tolerated(0.33) benign(0.032) TCGA-NC-A5HN-01 5 89954007 89954007 C G GPR98 Missense_Mutation p.S1555W 0.32 probably_damaging(0.984) TCGA-NC-A5HN-01 5 89979931 89979931 G C GPR98 Missense_Mutation p.D2065H 0.52 probably_damaging(0.998) TCGA-NC-A5HN-01 6 100868673 100868673 T A SIM1 Missense_Mutation p.Y387F 0.36 deleterious(0) probably_damaging(0.996) TCGA-NC-A5HN-01 6 10411889 10411889 C A TFAP2A Intron 0.38 TCGA-NC-A5HN-01 6 105244820 105244820 A T HACE1 Missense_Mutation p.L233Q 0.31 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HN-01 6 111587849 111587849 G T KIAA1919 Missense_Mutation p.A362S 0.40 tolerated(0.1) benign(0.056) TCGA-NC-A5HN-01 6 119510937 119510937 C T MAN1A1 Missense_Mutation p.G480S 0.38 deleterious(0) probably_damaging(0.996) TCGA-NC-A5HN-01 6 12163638 12163638 A G HIVEP1 Silent p.L2367L 0.25 TCGA-NC-A5HN-01 6 125231846 125231846 C T RP11-510H23.1 RNA 0.29 TCGA-NC-A5HN-01 6 129807745 129807745 G C LAMA2 Missense_Mutation p.V2626L 0.39 tolerated(0.62) benign(0.035) TCGA-NC-A5HN-01 6 131466438 131466438 C G AKAP7 Silent p.S11S 0.29 TCGA-NC-A5HN-01 6 132054759 132054759 C A ENPP3 Missense_Mutation p.P662Q 0.28 tolerated(0.09) possibly_damaging(0.826) TCGA-NC-A5HN-01 6 133014251 133014251 T A VNN1 Silent p.S246S 0.26 TCGA-NC-A5HN-01 6 137814956 137814956 C A OLIG3 Missense_Mutation p.V118L 0.09 deleterious(0) probably_damaging(0.983) TCGA-NC-A5HN-01 6 1395086 1395086 G A FOXF2 Missense_Mutation p.V443I 0.16 deleterious(0.01) benign(0.043) TCGA-NC-A5HN-01 6 151936589 151936589 G A CCDC170 Silent p.L574L 0.40 TCGA-NC-A5HN-01 6 152570335 152570335 C A SYNE1 Silent p.L6511L 0.25 TCGA-NC-A5HN-01 6 28116162 28116162 A T ZKSCAN8 5'UTR 0.17 TCGA-NC-A5HN-01 6 28297421 28297421 T C ZSCAN31 Missense_Mutation p.K14E 0.06 deleterious(0) probably_damaging(0.956) TCGA-NC-A5HN-01 6 30520329 30520329 C T GNL1 Silent p.V338V 0.47 TCGA-NC-A5HN-01 6 3156298 3156298 A G TUBB2A Missense_Mutation p.V49A 0.17 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-NC-A5HN-01 6 31742295 31742295 G A VWA7 Missense_Mutation p.P240L 0.17 deleterious(0.02) possibly_damaging(0.736) TCGA-NC-A5HN-01 6 31867659 31867659 C T ZBTB12 3'UTR 0.26 TCGA-NC-A5HN-01 6 35196462 35196462 C A SCUBE3 Silent p.R94R 0.21 TCGA-NC-A5HN-01 6 38709654 38709654 A G DNAH8 Silent p.K211K 0.25 TCGA-NC-A5HN-01 6 38800171 38800171 T C DNAH8 Missense_Mutation p.F1204S 0.29 probably_damaging(0.91) TCGA-NC-A5HN-01 6 43227005 43227005 A C TTBK1 Missense_Mutation p.K416Q 0.18 benign(0.126) TCGA-NC-A5HN-01 6 43307557 43307557 T C ZNF318 Silent p.K1393K 0.12 TCGA-NC-A5HN-01 6 46657727 46657727 A G TDRD6 Missense_Mutation p.K621R 0.16 tolerated(0.91) benign(0.004) TCGA-NC-A5HN-01 6 46826912 46826912 C G GPR116 Missense_Mutation p.A910P 0.15 tolerated(1) benign(0.002) TCGA-NC-A5HN-01 6 50682875 50682875 G A TFAP2D Missense_Mutation p.C29Y 0.14 deleterious(0) possibly_damaging(0.831) TCGA-NC-A5HN-01 6 556517 556517 C T EXOC2 Silent p.K633K 0.16 TCGA-NC-A5HN-01 6 57015540 57015540 G A ZNF451 Missense_Mutation p.D878N 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-NC-A5HN-01 6 6654851 6654851 G T LY86 Missense_Mutation p.M160I 0.12 tolerated_low_confidence(1) benign(0) TCGA-NC-A5HN-01 6 69666007 69666007 A T BAI3 Silent p.A429A 0.46 TCGA-NC-A5HN-01 6 76527290 76527290 C A MYO6 Missense_Mutation p.A9E 0.35 deleterious(0) unknown(0) TCGA-NC-A5HN-01 6 83847005 83847007 CTA TT DOPEY1 Frame_Shift_Del p.S1083Vfs*21 0.18 TCGA-NC-A5HN-01 6 83848284 83848284 C G DOPEY1 Missense_Mutation p.A1508G 0.25 tolerated(0.37) benign(0.006) TCGA-NC-A5HN-01 6 87725598 87725598 C A HTR1E Nonsense_Mutation p.Y182* 0.37 TCGA-NC-A5HN-01 6 91296570 91296570 G C MAP3K7 Silent p.S11S 0.46 TCGA-NC-A5HN-01 7 100180051 100180051 G C LRCH4 Silent p.P84P 0.24 TCGA-NC-A5HN-01 7 100453415 100453415 C T SLC12A9 Missense_Mutation p.S135F 0.30 tolerated(0.28) benign(0.002) TCGA-NC-A5HN-01 7 100683956 100683956 C A MUC17 Missense_Mutation p.P3087T 0.31 probably_damaging(0.981) TCGA-NC-A5HN-01 7 103017304 103017304 T C SLC26A5 Silent p.V664V 0.52 TCGA-NC-A5HN-01 7 103137086 103137094 ATCACAAAA - RELN In_Frame_Del p.F3025_I3027del 0.25 TCGA-NC-A5HN-01 7 104751235 104751235 C G KMT2E Missense_Mutation p.P1330A 0.26 tolerated_low_confidence(0.25) benign(0.013) TCGA-NC-A5HN-01 7 106768716 106768716 C A PRKAR2B Silent p.I152I 0.31 TCGA-NC-A5HN-01 7 107531607 107531607 G A DLD 5'UTR 0.36 TCGA-NC-A5HN-01 7 107674747 107674747 T C LAMB4 Missense_Mutation p.Q1575R 0.24 tolerated(0.18) benign(0) TCGA-NC-A5HN-01 7 113518338 113518338 C A PPP1R3A Missense_Mutation p.A937S 0.18 tolerated(0.73) benign(0.004) TCGA-NC-A5HN-01 7 123599893 123599893 C G SPAM1 Missense_Mutation p.A467G 0.31 tolerated(0.08) benign(0.029) TCGA-NC-A5HN-01 7 128641129 128641129 G A TNPO3 Missense_Mutation p.R286C 0.30 tolerated(0.14) benign(0.045) TCGA-NC-A5HN-01 7 135377167 135377167 G T SLC13A4 Missense_Mutation p.P375Q 0.54 tolerated(0.12) possibly_damaging(0.836) TCGA-NC-A5HN-01 7 13975390 13975390 G T ETV1 Missense_Mutation p.P166Q 0.19 tolerated(0.34) probably_damaging(0.989) TCGA-NC-A5HN-01 7 141795384 141795384 G A MGAM Nonsense_Mutation p.W1597* 0.30 TCGA-NC-A5HN-01 7 141952297 141952297 A T PRSS58 Missense_Mutation p.C191S 0.32 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HN-01 7 142032088 142032088 G A TRBV7-1 Splice_Site p.X17_splice 0.31 TCGA-NC-A5HN-01 7 142099726 142099726 A C TRBV7-8 Missense_Mutation p.S26A 0.24 tolerated(0.13) benign(0.008) TCGA-NC-A5HN-01 7 142723839 142723839 C A OR9A2 Missense_Mutation p.R127S 0.29 deleterious(0.02) possibly_damaging(0.839) TCGA-NC-A5HN-01 7 142997126 142997126 G A CASP2 Silent p.V286V 0.28 TCGA-NC-A5HN-01 7 150697664 150697664 G T NOS3 Missense_Mutation p.V404L 0.12 tolerated(0.26) benign(0.001) TCGA-NC-A5HN-01 7 154585835 154585835 G C DPP6 Missense_Mutation p.A395P 0.15 deleterious(0) possibly_damaging(0.852) TCGA-NC-A5HN-01 7 155251664 155251664 G A EN2 Missense_Mutation p.D198N 0.27 tolerated(0.05) probably_damaging(0.956) TCGA-NC-A5HN-01 7 155530776 155530776 G A RBM33 Silent p.P472P 0.20 TCGA-NC-A5HN-01 7 15599807 15599807 A G AGMO Silent p.A72A 0.15 TCGA-NC-A5HN-01 7 157926430 157926430 G C PTPRN2 Missense_Mutation p.L499V 0.14 tolerated(0.1) possibly_damaging(0.906) TCGA-NC-A5HN-01 7 20449501 20449501 A G ITGB8 Missense_Mutation p.K731E 0.17 tolerated(0.16) benign(0.094) TCGA-NC-A5HN-01 7 20825317 20825317 C A SP8 Missense_Mutation p.S40I 0.29 tolerated(0.1) benign(0.025) TCGA-NC-A5HN-01 7 21516756 21516756 G T SP4 Missense_Mutation p.V580L 0.25 tolerated(0.46) benign(0.014) TCGA-NC-A5HN-01 7 27187072 27187072 G T HOXA6 Silent p.P99P 0.31 TCGA-NC-A5HN-01 7 35284583 35284583 T A TBX20 Missense_Mutation p.N211I 0.27 deleterious(0) probably_damaging(1) TCGA-NC-A5HN-01 7 36580097 36580097 C A AOAH Silent p.G378G 0.13 TCGA-NC-A5HN-01 7 44713524 44713524 C G OGDH Missense_Mutation p.L258V 0.26 deleterious(0.05) benign(0.012) TCGA-NC-A5HN-01 7 51095703 51095703 C A COBL Missense_Mutation p.Q1030H 0.37 tolerated(0.43) benign(0.023) TCGA-NC-A5HN-01 7 5330834 5330834 G A SLC29A4 Silent p.V127V 0.22 TCGA-NC-A5HN-01 7 64452518 64452518 C T ERV3-1 Missense_Mutation p.G296E 0.56 tolerated(0.18) probably_damaging(0.951) TCGA-NC-A5HN-01 7 76110003 76110003 G T DTX2 Silent p.L59L 0.25 TCGA-NC-A5HN-01 7 86469063 86469063 G T GRM3 Missense_Mutation p.V745L 0.44 tolerated(0.3) possibly_damaging(0.457) TCGA-NC-A5HN-01 7 87150126 87150126 G T ABCB1 Missense_Mutation p.H918N 0.25 tolerated(0.25) benign(0) TCGA-NC-A5HN-01 7 92763017 92763017 C A SAMD9L Missense_Mutation p.W756C 0.09 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HN-01 7 92763714 92763714 T A SAMD9L Missense_Mutation p.E524V 0.31 deleterious(0.01) possibly_damaging(0.578) TCGA-NC-A5HN-01 7 94059592 94059592 G A COL1A2 Missense_Mutation p.E1330K 0.55 unknown(0) TCGA-NC-A5HN-01 7 94898781 94898781 A G PPP1R9A Missense_Mutation p.H1029R 0.24 tolerated(0.14) benign(0.104) TCGA-NC-A5HN-01 7 99722592 99722592 C T CNPY4 3'UTR 0.28 TCGA-NC-A5HN-01 8 109094873 109094873 G T RSPO2 5'UTR 0.20 TCGA-NC-A5HN-01 8 110424645 110424645 T C PKHD1L1 Splice_Site p.X745_splice 0.25 TCGA-NC-A5HN-01 8 110499013 110499013 G - PKHD1L1 Frame_Shift_Del p.V3282Lfs*8 0.19 TCGA-NC-A5HN-01 8 113266496 113266496 T C CSMD3 Missense_Mutation p.T3366A 0.21 tolerated(0.23) benign(0.16) TCGA-NC-A5HN-01 8 124117685 124117685 G T TBC1D31 Missense_Mutation p.G397V 0.45 tolerated(0.2) benign(0.006) TCGA-NC-A5HN-01 8 124781015 124781015 G C FAM91A1 Splice_Site p.X24_splice 0.24 TCGA-NC-A5HN-01 8 124792779 124792779 G A FAM91A1 Missense_Mutation p.A234T 0.32 tolerated(0.25) benign(0.098) TCGA-NC-A5HN-01 8 125132034 125132034 G T FER1L6 3'UTR 0.18 TCGA-NC-A5HN-01 8 12594559 12594559 G C LONRF1 Missense_Mutation p.P402A 0.31 tolerated(0.65) benign(0.048) TCGA-NC-A5HN-01 8 131073298 131073298 C T ASAP1 Missense_Mutation p.D907N 0.43 tolerated(0.22) benign(0.126) TCGA-NC-A5HN-01 8 132052032 132052032 A G ADCY8 Missense_Mutation p.V183A 0.32 tolerated(0.31) possibly_damaging(0.577) TCGA-NC-A5HN-01 8 133980187 133980187 G A TG Silent p.Q1945Q 0.24 TCGA-NC-A5HN-01 8 134488025 134488025 G A ST3GAL1 Silent p.T81T 0.27 TCGA-NC-A5HN-01 8 139833446 139833446 C G COL22A1 Missense_Mutation p.R393P 0.40 unknown(0) TCGA-NC-A5HN-01 8 143695376 143695376 C A ARC Missense_Mutation p.R86L 0.21 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-NC-A5HN-01 8 146068466 146068466 G C ZNF7 Silent p.G658G 0.17 TCGA-NC-A5HN-01 8 18730112 18730112 G T PSD3 Missense_Mutation p.P88T 0.44 deleterious_low_confidence(0.01) benign(0.282) TCGA-NC-A5HN-01 8 25715852 25715852 G T EBF2 Missense_Mutation p.T504N 0.12 deleterious_low_confidence(0.03) benign(0.003) TCGA-NC-A5HN-01 8 26227693 26227693 G C PPP2R2A Missense_Mutation p.D380H 0.20 deleterious(0) probably_damaging(0.956) TCGA-NC-A5HN-01 8 30704518 30704518 A T TEX15 Silent p.I672I 0.15 TCGA-NC-A5HN-01 8 35583801 35583801 T A UNC5D Missense_Mutation p.S479T 0.26 tolerated(0.06) benign(0.004) TCGA-NC-A5HN-01 8 35624501 35624501 A G UNC5D Missense_Mutation p.T799A 0.24 tolerated(0.08) benign(0.036) TCGA-NC-A5HN-01 8 39873016 39873016 T A IDO2 Silent p.P386P 0.34 TCGA-NC-A5HN-01 8 42179626 42179646 TTCAGAGCTTCGAGAAGAAAG - IKBKB In_Frame_Del p.I598_V605delinsM 0.44 TCGA-NC-A5HN-01 8 55534698 55534698 A T RP1 Missense_Mutation p.I213F 0.53 tolerated(0.06) possibly_damaging(0.734) TCGA-NC-A5HN-01 8 55539427 55539427 T G RP1 Missense_Mutation p.I995M 0.27 tolerated(0.22) possibly_damaging(0.501) TCGA-NC-A5HN-01 8 66539569 66539569 C T ARMC1 Missense_Mutation p.R22Q 0.27 deleterious(0.01) possibly_damaging(0.659) TCGA-NC-A5HN-01 8 71071775 71071775 T C NCOA2 Silent p.E363E 0.28 TCGA-NC-A5HN-01 8 77617684 77617684 T A ZFHX4 Nonsense_Mutation p.L454* 0.31 TCGA-NC-A5HN-01 8 77617686 77617686 C A ZFHX4 Missense_Mutation p.H455N 0.25 benign(0.005) TCGA-NC-A5HN-01 8 82606786 82606786 C G SLC10A5 Missense_Mutation p.R141T 0.54 tolerated(0.09) benign(0.084) TCGA-NC-A5HN-01 8 87683228 87683228 T C CNGB3 Missense_Mutation p.Y146C 0.28 deleterious(0.01) benign(0.093) TCGA-NC-A5HN-01 8 92007885 92007885 T C TMEM55A 3'UTR 0.24 TCGA-NC-A5HN-01 8 93017253 93017253 G A RUNX1T1 Intron 0.25 TCGA-NC-A5HN-01 8 9437791 9437791 A T TNKS Missense_Mutation p.S266C 0.12 deleterious(0.03) probably_damaging(0.935) TCGA-NC-A5HN-01 8 94934610 94934610 C T PDP1 Missense_Mutation p.S133F 0.30 deleterious(0) possibly_damaging(0.804) TCGA-NC-A5HN-01 8 97156786 97156786 C T GDF6 3'UTR 0.25 TCGA-NC-A5HN-01 8 99042706 99042706 T G MATN2 Silent p.A791A 0.73 TCGA-NC-A5HN-01 9 104341478 104341478 C A GRIN3A Missense_Mutation p.Q977H 0.30 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HN-01 9 113169787 113169787 A G SVEP1 Missense_Mutation p.I2698T 0.22 benign(0.012) TCGA-NC-A5HN-01 9 116346566 116346566 C T RGS3 Silent p.S958S 0.30 TCGA-NC-A5HN-01 9 121976413 121976413 G A BRINP1 Nonsense_Mutation p.Q236* 0.78 TCGA-NC-A5HN-01 9 125140838 125140838 G T PTGS1 Missense_Mutation p.R113L 0.39 deleterious(0) possibly_damaging(0.752) TCGA-NC-A5HN-01 9 125613492 125613492 T A RC3H2 Missense_Mutation p.Q1083L 0.38 deleterious_low_confidence(0.01) benign(0.363) TCGA-NC-A5HN-01 9 126143889 126143889 G A DENND1A Missense_Mutation p.P951L 0.34 tolerated_low_confidence(0.09) benign(0.24) TCGA-NC-A5HN-01 9 130588939 130588939 C G ENG Missense_Mutation p.V125L 0.05 tolerated(0.06) benign(0.232) TCGA-NC-A5HN-01 9 130656965 130656965 C A ST6GALNAC6 Missense_Mutation p.Q41H 0.11 benign(0.043) TCGA-NC-A5HN-01 9 130931348 130931348 C T CIZ1 Missense_Mutation p.E760K 0.14 deleterious(0.01) benign(0.097) TCGA-NC-A5HN-01 9 132641742 132641742 C T USP20 Intron 0.07 TCGA-NC-A5HN-01 9 133570876 133570876 C T EXOSC2 Intron 0.10 TCGA-NC-A5HN-01 9 135458246 135458246 C G BARHL1 Missense_Mutation p.A21G 0.14 tolerated_low_confidence(0.78) benign(0.001) TCGA-NC-A5HN-01 9 135862164 135862164 G T GFI1B Silent p.P33P 0.22 TCGA-NC-A5HN-01 9 136583796 136583796 G A SARDH Intron 0.13 TCGA-NC-A5HN-01 9 136677283 136677283 C A VAV2 Missense_Mutation p.D169Y 0.10 deleterious(0) probably_damaging(0.926) TCGA-NC-A5HN-01 9 137646135 137646135 A G COL5A1 Missense_Mutation p.Q597R 0.15 probably_damaging(0.991) TCGA-NC-A5HN-01 9 137715275 137715275 C G COL5A1 Missense_Mutation p.P1553R 0.37 unknown(0) TCGA-NC-A5HN-01 9 138377484 138377484 G A PPP1R26 Silent p.Q376Q 0.24 TCGA-NC-A5HN-01 9 139290127 139290127 C A SNAPC4 Missense_Mutation p.M91I 0.52 tolerated(0.05) probably_damaging(0.985) TCGA-NC-A5HN-01 9 15744328 15744328 C A CCDC171 Missense_Mutation p.H703N 0.33 tolerated(0.23) benign(0.004) TCGA-NC-A5HN-01 9 16419086 16419086 G A BNC2 Silent p.V1067V 0.25 TCGA-NC-A5HN-01 9 2056728 2056728 C G SMARCA2 Silent p.L410L 0.51 TCGA-NC-A5HN-01 9 25678025 25678025 C G TUSC1 Missense_Mutation p.E99Q 0.50 deleterious(0) probably_damaging(0.992) TCGA-NC-A5HN-01 9 35611829 35611829 T C CD72 Missense_Mutation p.K308E 0.19 tolerated(0.19) benign(0.018) TCGA-NC-A5HN-01 9 35618058 35618058 A C CD72 Missense_Mutation p.L48R 0.27 deleterious(0.04) benign(0.001) TCGA-NC-A5HN-01 9 90502564 90502564 G A SPATA31E1 Silent p.R1054R 0.26 TCGA-NC-A5HN-01 9 94488973 94488973 G A ROR2 Silent p.I412I 0.52 TCGA-NC-A5HN-01 9 97084518 97084518 G C NUTM2F Missense_Mutation p.N269K 0.43 deleterious(0) probably_damaging(0.948) TCGA-NC-A5HN-01 X 109697486 109697486 A G RGAG1 Missense_Mutation p.E1214G 0.45 deleterious_low_confidence(0) possibly_damaging(0.625) TCGA-NC-A5HN-01 X 11682390 11682390 C A ARHGAP6 Missense_Mutation p.G187W 0.67 deleterious_low_confidence(0.01) possibly_damaging(0.652) TCGA-NC-A5HN-01 X 11682393 11682393 G T ARHGAP6 Missense_Mutation p.R186S 0.62 tolerated_low_confidence(0.39) benign(0.001) TCGA-NC-A5HN-01 X 119421016 119421016 G A TMEM255A Missense_Mutation p.A139V 0.31 tolerated(0.52) benign(0.149) TCGA-NC-A5HN-01 X 128694576 128694576 T A OCRL Missense_Mutation p.L258I 0.29 deleterious(0.03) probably_damaging(1) TCGA-NC-A5HN-01 X 144909302 144909302 C T TMEM257 Missense_Mutation p.S36F 0.57 tolerated_low_confidence(0.79) benign(0) TCGA-NC-A5HN-01 X 152158754 152158754 C A PNMA5 3'UTR 0.14 TCGA-NC-A5HN-01 X 153627687 153627687 A G RPL10 Missense_Mutation p.Y11C 0.20 deleterious(0) possibly_damaging(0.468) TCGA-NC-A5HN-01 X 19009072 19009072 G A GPR64 Silent p.N988N 0.18 TCGA-NC-A5HN-01 X 22132597 22132597 T C PHEX Silent p.L399L 0.71 TCGA-NC-A5HN-01 X 24229379 24229382 CATT - ZFX Frame_Shift_Del p.I769Tfs*26 0.82 TCGA-NC-A5HN-01 X 29973774 29973774 T A IL1RAPL1 Missense_Mutation p.I643K 0.78 deleterious_low_confidence(0) benign(0.073) TCGA-NC-A5HN-01 X 31089498 31089498 G A FTHL17 3'UTR 0.75 TCGA-NC-A5HN-01 X 41075686 41075686 A G USP9X Missense_Mutation p.M1956V 0.80 tolerated(0.59) benign(0.004) TCGA-NC-A5HN-01 X 67454396 67454396 C A OPHN1 Missense_Mutation p.R140M 0.84 deleterious(0) possibly_damaging(0.711) TCGA-NC-A5HN-01 X 71350159 71350159 C T RGAG4 Missense_Mutation p.R411K 0.10 tolerated_low_confidence(0.75) unknown(0) TCGA-NC-A5HN-01 X 76940015 76940015 G C ATRX Missense_Mutation p.L245V 0.45 probably_damaging(0.948) TCGA-NC-A5HN-01 X 79698239 79698239 A T FAM46D Silent p.V67V 0.42 TCGA-NC-A5HN-01 X 83128137 83128137 A T CYLC1 Missense_Mutation p.N141Y 0.64 deleterious(0.04) possibly_damaging(0.901) TCGA-NC-A5HN-01 X 86872942 86872942 G A KLHL4 Silent p.L245L 0.85 TCGA-NC-A5HN-01 X 92965151 92965151 C T FAM133A Missense_Mutation p.H245Y 0.27 deleterious_low_confidence(0) unknown(0) TCGA-NC-A5HO-01 10 15902260 15902260 C A FAM188A Missense_Mutation p.W13C 0.47 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HO-01 10 27703012 27703043 GGGTTCGGGGGATTTCGGGGGTGCCAGGGGTC CGGTT PTCHD3 In_Frame_Del p.G46_P54del 0.34 TCGA-NC-A5HO-01 10 42831567 42831567 C G RP11-313J2.1 RNA 0.33 TCGA-NC-A5HO-01 10 50901832 50901832 T C C10orf53 Missense_Mutation p.I37T 0.37 tolerated_low_confidence(0.56) benign(0.235) TCGA-NC-A5HO-01 11 105804610 105804610 C A GRIA4 Silent p.R737R 0.52 TCGA-NC-A5HO-01 11 118377357 118377357 A T KMT2A Missense_Mutation p.T3584S 0.48 benign(0.005) TCGA-NC-A5HO-01 11 124294128 124294128 C A OR8B4 Missense_Mutation p.V214F 0.44 tolerated_low_confidence(1) benign(0.001) TCGA-NC-A5HO-01 11 24759821 24759821 A T LUZP2 Silent p.S102S 0.36 TCGA-NC-A5HO-01 11 44072155 44072155 T C ACCSL Silent p.D206D 0.33 TCGA-NC-A5HO-01 11 47435151 47435151 A G SLC39A13 Missense_Mutation p.S217G 0.31 deleterious(0) possibly_damaging(0.635) TCGA-NC-A5HO-01 11 47594817 47594817 C G KBTBD4 Missense_Mutation p.D424H 0.37 deleterious(0.02) possibly_damaging(0.452) TCGA-NC-A5HO-01 11 55656456 55656457 CT A TRIM51 Frame_Shift_Del p.A247Dfs*20 0.16 TCGA-NC-A5HO-01 11 55682029 55682029 A G OR5W2 Silent p.T10T 0.26 TCGA-NC-A5HO-01 11 55890393 55890393 C - OR8H3 Frame_Shift_Del p.P183Qfs*3 0.21 TCGA-NC-A5HO-01 11 55944287 55944287 G T OR5J2 Missense_Mutation p.C65F 0.26 tolerated(0.14) benign(0.009) TCGA-NC-A5HO-01 11 5757848 5757848 C A OR56B1 Missense_Mutation p.H34Q 0.55 tolerated(0.1) possibly_damaging(0.835) TCGA-NC-A5HO-01 11 59245403 59245403 T C OR4D10 Silent p.P167P 0.29 TCGA-NC-A5HO-01 12 117715851 117715851 G - NOS1 Frame_Shift_Del p.P526Rfs*39 0.24 TCGA-NC-A5HO-01 12 129558370 129558370 G C TMEM132D 3'UTR 0.37 TCGA-NC-A5HO-01 12 14943576 14943576 T C WBP11 Missense_Mutation p.K375E 0.49 deleterious_low_confidence(0.01) unknown(0) TCGA-NC-A5HO-01 12 25672876 25672876 G A IFLTD1 Missense_Mutation p.A311V 0.30 tolerated(0.17) benign(0.007) TCGA-NC-A5HO-01 12 31850879 31850879 A G AMN1 Missense_Mutation p.V110A 0.10 deleterious(0.01) possibly_damaging(0.725) TCGA-NC-A5HO-01 12 40693019 40693019 T C LRRK2 Silent p.C1152C 0.26 TCGA-NC-A5HO-01 12 41946498 41946498 G A PDZRN4 Missense_Mutation p.G415D 0.25 deleterious(0) probably_damaging(1) TCGA-NC-A5HO-01 12 43822136 43822136 A T ADAMTS20 Missense_Mutation p.L1285M 0.27 tolerated(0.22) possibly_damaging(0.6) TCGA-NC-A5HO-01 12 54757442 54757442 G A GPR84 Missense_Mutation p.A65V 0.40 deleterious(0) probably_damaging(0.986) TCGA-NC-A5HO-01 12 54902232 54902232 C A NCKAP1L Silent p.V141V 0.31 TCGA-NC-A5HO-01 12 55025560 55025560 A T LACRT Missense_Mutation p.M106K 0.29 tolerated_low_confidence(0.05) benign(0.092) TCGA-NC-A5HO-01 12 65445170 65445170 C A WIF1 Nonsense_Mutation p.E367* 0.30 TCGA-NC-A5HO-01 12 70946665 70946665 T C PTPRB Missense_Mutation p.K1760R 0.27 tolerated(0.14) benign(0.012) TCGA-NC-A5HO-01 12 97051711 97051711 A G C12orf55 Missense_Mutation p.K1718E 0.24 tolerated(0.91) benign(0.33) TCGA-NC-A5HO-01 13 30077323 30077323 G A MTUS2 Missense_Mutation p.V1374I 0.50 deleterious(0.03) benign(0.136) TCGA-NC-A5HO-01 13 38229341 38229341 G C TRPC4 Missense_Mutation p.H590D 0.48 deleterious(0.01) probably_damaging(0.987) TCGA-NC-A5HO-01 13 72014677 72014677 A T DACH1 3'UTR 0.36 TCGA-NC-A5HO-01 13 75936249 75936249 C G TBC1D4 Missense_Mutation p.Q331H 0.49 tolerated(0.34) benign(0.005) TCGA-NC-A5HO-01 13 78472382 78472382 G T EDNRB Missense_Mutation p.H518N 0.47 tolerated(0.07) benign(0.059) TCGA-NC-A5HO-01 14 103434590 103434590 C G CDC42BPB Missense_Mutation p.K782N 0.30 tolerated(0.09) benign(0.221) TCGA-NC-A5HO-01 14 105612144 105612144 C T JAG2 Missense_Mutation p.C959Y 0.23 deleterious(0) probably_damaging(0.909) TCGA-NC-A5HO-01 14 106791080 106791080 G C IGHV3-30 Missense_Mutation p.D92E 0.10 deleterious_low_confidence(0.05) probably_damaging(0.948) TCGA-NC-A5HO-01 14 106815797 106815797 G C IGHV3-33 Missense_Mutation p.D92E 0.14 deleterious_low_confidence(0.05) probably_damaging(0.948) TCGA-NC-A5HO-01 14 106866426 106866426 C A IGHV3-38 Missense_Mutation p.V110L 0.31 tolerated_low_confidence(0.2) benign(0.026) TCGA-NC-A5HO-01 14 22564779 22564779 A T TRDV1 Missense_Mutation p.N77I 0.27 deleterious(0.01) possibly_damaging(0.743) TCGA-NC-A5HO-01 14 57749942 57749942 T C AP5M1 Silent p.Y429Y 0.24 TCGA-NC-A5HO-01 14 81669077 81669077 C A GTF2A1 Intron 0.21 TCGA-NC-A5HO-01 14 81669078 81669078 C T GTF2A1 Intron 0.21 TCGA-NC-A5HO-01 14 89181472 89181472 C G EML5 Missense_Mutation p.D419H 0.25 deleterious(0.01) probably_damaging(0.987) TCGA-NC-A5HO-01 15 20651201 20651201 G C HERC2P3 RNA 0.25 TCGA-NC-A5HO-01 15 20874910 20874910 G T NBEAP1 RNA 0.07 TCGA-NC-A5HO-01 15 22369155 22369155 C A OR4M2 Missense_Mutation p.P194T 0.14 tolerated(0.13) benign(0.002) TCGA-NC-A5HO-01 15 25453266 25453266 G T SNORD115-21 RNA 0.36 TCGA-NC-A5HO-01 15 34393824 34393824 C G EMC7 Missense_Mutation p.E73Q 0.39 tolerated(0.06) benign(0.065) TCGA-NC-A5HO-01 15 77771629 77771629 G C HMG20A Missense_Mutation p.R339P 0.05 deleterious(0) probably_damaging(0.956) TCGA-NC-A5HO-01 16 19729693 19729693 C T IQCK Missense_Mutation p.S22L 0.14 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-NC-A5HO-01 16 19884085 19884085 G A GPRC5B Missense_Mutation p.S28F 0.26 deleterious(0.01) possibly_damaging(0.83) TCGA-NC-A5HO-01 16 20346834 20346834 C G UMOD Missense_Mutation p.A611P 0.12 tolerated(0.13) possibly_damaging(0.475) TCGA-NC-A5HO-01 16 27375269 27375269 A G IL4R 3'UTR 0.51 TCGA-NC-A5HO-01 16 28167672 28167672 T C XPO6 Missense_Mutation p.I274V 0.53 tolerated(0.27) benign(0.405) TCGA-NC-A5HO-01 16 69333521 69333521 G A SNTB2 Silent p.R458R 0.51 TCGA-NC-A5HO-01 16 69971462 69971462 C T WWP2 Silent p.C750C 0.06 TCGA-NC-A5HO-01 17 1381975 1381975 T A MYO1C Nonsense_Mutation p.K383* 0.37 TCGA-NC-A5HO-01 17 16330835 16330835 G T TRPV2 Missense_Mutation p.G442W 0.42 deleterious(0) probably_damaging(0.992) TCGA-NC-A5HO-01 17 27287957 27287957 G A SEZ6 Silent p.T425T 0.59 TCGA-NC-A5HO-01 17 37922075 37922075 C A IKZF3 Missense_Mutation p.A500S 0.58 deleterious(0.01) possibly_damaging(0.529) TCGA-NC-A5HO-01 17 42580775 42580775 G A GPATCH8 5'Flank 0.54 TCGA-NC-A5HO-01 17 47587884 47587884 A G NGFR Missense_Mutation p.T227A 0.65 tolerated(0.1) benign(0.358) TCGA-NC-A5HO-01 17 5347808 5347808 C A DHX33 Missense_Mutation p.R614L 0.33 tolerated(0.1) benign(0.386) TCGA-NC-A5HO-01 17 56729236 56729236 G A TEX14 Missense_Mutation p.L43F 0.45 deleterious(0) probably_damaging(1) TCGA-NC-A5HO-01 17 59067523 59067523 G A BCAS3 Silent p.L471L 0.58 TCGA-NC-A5HO-01 17 6021335 6021335 G A WSCD1 Missense_Mutation p.R401Q 0.55 tolerated(0.05) benign(0.332) TCGA-NC-A5HO-01 17 72915987 72915987 A G USH1G Missense_Mutation p.M315T 0.57 deleterious(0) probably_damaging(0.961) TCGA-NC-A5HO-01 17 73501559 73501559 G A CASKIN2 Intron 0.76 TCGA-NC-A5HO-01 17 7579361 7579361 A C TP53 Missense_Mutation p.F109C 0.47 deleterious(0) probably_damaging(1) TCGA-NC-A5HO-01 17 76570926 76570926 G A DNAH17 Missense_Mutation p.L72F 0.72 benign(0.007) TCGA-NC-A5HO-01 18 28968897 28968897 G A DSG4 Missense_Mutation p.V145I 0.38 tolerated(0.16) probably_damaging(0.929) TCGA-NC-A5HO-01 18 31318903 31318903 T C ASXL3 Missense_Mutation p.L512S 0.21 benign(0.052) TCGA-NC-A5HO-01 18 32409025 32409025 G A DTNA Intron 0.27 TCGA-NC-A5HO-01 18 32954091 32954091 T A ZNF396 Missense_Mutation p.R56W 0.38 deleterious(0) probably_damaging(0.938) TCGA-NC-A5HO-01 18 56247752 56247752 G C ALPK2 Missense_Mutation p.Q86E 0.27 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HO-01 18 59770119 59770119 G T PIGN Missense_Mutation p.L626M 0.53 tolerated(0.08) possibly_damaging(0.734) TCGA-NC-A5HO-01 18 60027191 60027191 T A TNFRSF11A Nonsense_Mutation p.C175* 0.33 TCGA-NC-A5HO-01 18 61034286 61034286 G A KDSR Silent p.L22L 0.43 TCGA-NC-A5HO-01 18 67508718 67508718 T C DOK6 3'UTR 0.40 TCGA-NC-A5HO-01 18 72167229 72167229 G A CNDP2 Silent p.L7L 0.27 TCGA-NC-A5HO-01 18 742990 742990 C T YES1 Missense_Mutation p.D330N 0.31 tolerated(0.09) possibly_damaging(0.506) TCGA-NC-A5HO-01 19 10690490 10690490 G A AP1M2 Nonsense_Mutation p.Q240* 0.37 TCGA-NC-A5HO-01 19 15132282 15132282 G T CCDC105 Missense_Mutation p.R331L 0.25 tolerated(0.33) benign(0.046) TCGA-NC-A5HO-01 19 18377887 18377887 T C KIAA1683 Missense_Mutation p.K155E 0.25 deleterious(0) possibly_damaging(0.76) TCGA-NC-A5HO-01 19 18981388 18981388 A G CERS1 Nonstop_Mutation p.*351Rext*116 0.36 TCGA-NC-A5HO-01 19 22154837 22154837 G T ZNF208 Missense_Mutation p.P1000H 0.28 deleterious(0) probably_damaging(0.965) TCGA-NC-A5HO-01 19 36352046 36352046 T G KIRREL2 Missense_Mutation p.L360R 0.21 deleterious(0) probably_damaging(0.99) TCGA-NC-A5HO-01 19 38621386 38621386 G A SIPA1L3 Silent p.P1039P 0.11 TCGA-NC-A5HO-01 19 39906027 39906027 G T PLEKHG2 Nonsense_Mutation p.E143* 0.32 TCGA-NC-A5HO-01 19 40424294 40424294 C A FCGBP Missense_Mutation p.A637S 0.26 probably_damaging(0.964) TCGA-NC-A5HO-01 19 43093178 43093178 G T CEACAM8 Missense_Mutation p.A239D 0.29 tolerated(0.28) benign(0.062) TCGA-NC-A5HO-01 19 48789993 48789993 G C ZNF114 Missense_Mutation p.R371P 0.33 tolerated(0.16) possibly_damaging(0.453) TCGA-NC-A5HO-01 19 48922527 48922527 T A GRIN2D Missense_Mutation p.V591D 0.30 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HO-01 19 49253740 49253740 A C FUT1 Missense_Mutation p.W267G 0.28 deleterious(0) probably_damaging(0.995) TCGA-NC-A5HO-01 19 49510282 49510282 G C RUVBL2 Silent p.A91A 0.27 TCGA-NC-A5HO-01 19 50156913 50156913 C T SCAF1 Silent p.P1089P 0.36 TCGA-NC-A5HO-01 19 50781436 50781436 G T MYH14 Missense_Mutation p.G1308C 0.31 deleterious(0.04) possibly_damaging(0.669) TCGA-NC-A5HO-01 19 52001430 52001430 C A SIGLEC12 Missense_Mutation p.G416V 0.22 deleterious(0) probably_damaging(0.992) TCGA-NC-A5HO-01 19 5219469 5219469 C G PTPRS Missense_Mutation p.A1259P 0.21 deleterious(0) probably_damaging(0.974) TCGA-NC-A5HO-01 19 52217182 52217182 G A HAS1 Missense_Mutation p.P412L 0.19 deleterious(0) possibly_damaging(0.696) TCGA-NC-A5HO-01 19 52519571 52519571 T C ZNF614 Missense_Mutation p.Y427C 0.36 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HO-01 19 52887577 52887577 C G ZNF880 Silent p.L248L 0.07 TCGA-NC-A5HO-01 19 53207687 53207687 T C ZNF611 3'UTR 0.40 TCGA-NC-A5HO-01 19 53762720 53762720 T A VN1R2 Silent p.P364P 0.31 TCGA-NC-A5HO-01 19 55086938 55086938 G T LILRA2 Missense_Mutation p.G291C 0.28 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HO-01 19 55494408 55494408 C A NLRP2 Silent p.R448R 0.25 TCGA-NC-A5HO-01 19 57646387 57646387 T C ZIM3 Missense_Mutation p.T440A 0.29 deleterious(0.03) benign(0.026) TCGA-NC-A5HO-01 19 58132801 58132801 A G ZNF134 3'UTR 0.30 TCGA-NC-A5HO-01 19 9087793 9087793 G A MUC16 Missense_Mutation p.P1341L 0.26 unknown(0) TCGA-NC-A5HO-01 19 9491875 9491875 G T ZNF177 Missense_Mutation p.G290W 0.24 deleterious(0) probably_damaging(1) TCGA-NC-A5HO-01 1 103496770 103496770 C A COL11A1 Missense_Mutation p.D228Y 0.42 probably_damaging(1) TCGA-NC-A5HO-01 1 104297412 104297413 - A AMY1C Frame_Shift_Ins p.P360Tfs*5 0.10 TCGA-NC-A5HO-01 1 114380790 114380790 T C PTPN22 Missense_Mutation p.K411R 0.48 tolerated(0.06) probably_damaging(0.942) TCGA-NC-A5HO-01 1 115456623 115456623 T A SYCP1 Missense_Mutation p.L559M 0.45 tolerated(0.22) possibly_damaging(0.541) TCGA-NC-A5HO-01 1 120611961 120611961 C T NOTCH2 Silent p.A20A 0.40 TCGA-NC-A5HO-01 1 144816541 144816541 C G NBPF9 Nonsense_Mutation p.S224* 0.04 TCGA-NC-A5HO-01 1 145440664 145440664 C T TXNIP Silent p.V288V 0.29 TCGA-NC-A5HO-01 1 153234310 153234310 C T LOR Silent p.V295V 0.31 TCGA-NC-A5HO-01 1 153516159 153516159 G A S100A4 3'UTR 0.39 TCGA-NC-A5HO-01 1 156215918 156215918 T A PAQR6 5'UTR 0.21 TCGA-NC-A5HO-01 1 156879823 156879823 C G PEAR1 Missense_Mutation p.A534G 0.21 tolerated(0.19) benign(0.011) TCGA-NC-A5HO-01 1 158517555 158517555 C - OR6Y1 Frame_Shift_Del p.C114Sfs*16 0.15 TCGA-NC-A5HO-01 1 158687311 158687311 C T OR6K3 Missense_Mutation p.D199N 0.24 tolerated(0.33) probably_damaging(0.996) TCGA-NC-A5HO-01 1 159410083 159410083 T A OR10J1 Missense_Mutation p.F179I 0.28 deleterious(0) probably_damaging(1) TCGA-NC-A5HO-01 1 162551241 162551241 G A UAP1 Missense_Mutation p.G276R 0.26 deleterious(0) probably_damaging(1) TCGA-NC-A5HO-01 1 162551242 162551242 G T UAP1 Missense_Mutation p.G276V 0.26 deleterious(0) probably_damaging(1) TCGA-NC-A5HO-01 1 167487675 167487675 C A CD247 Missense_Mutation p.A10S 0.25 tolerated(0.46) benign(0.003) TCGA-NC-A5HO-01 1 178410696 178410696 A G RASAL2 Missense_Mutation p.S281G 0.33 tolerated(0.22) benign(0.006) TCGA-NC-A5HO-01 1 181546947 181546947 G T CACNA1E Silent p.L186L 0.23 TCGA-NC-A5HO-01 1 196712622 196712622 T A CFH Nonsense_Mutation p.Y1058* 0.21 TCGA-NC-A5HO-01 1 197021849 197021849 A T F13B Nonsense_Mutation p.Y490* 0.30 TCGA-NC-A5HO-01 1 200574495 200574495 T A KIF14 Missense_Mutation p.K554N 0.36 deleterious(0) probably_damaging(0.996) TCGA-NC-A5HO-01 1 216348482 216348482 T A USH2A Intron 0.30 TCGA-NC-A5HO-01 1 222696953 222696953 C T HHIPL2 Splice_Site p.X630_splice 0.32 TCGA-NC-A5HO-01 1 222803146 222803146 C T MIA3 Silent p.L862L 0.36 TCGA-NC-A5HO-01 1 226127067 226127067 T C LEFTY2 Missense_Mutation p.D244G 0.26 deleterious(0.01) benign(0.071) TCGA-NC-A5HO-01 1 229772731 229772731 A G URB2 Missense_Mutation p.I791V 0.32 tolerated(0.42) benign(0.001) TCGA-NC-A5HO-01 1 237791241 237791241 G T RYR2 Missense_Mutation p.A2101S 0.38 benign(0.023) TCGA-NC-A5HO-01 1 237919620 237919620 C A RYR2 Nonsense_Mutation p.Y3726* 0.27 TCGA-NC-A5HO-01 1 237919621 237919621 C A RYR2 Missense_Mutation p.Q3727K 0.26 possibly_damaging(0.85) TCGA-NC-A5HO-01 1 240341285 240341285 G A FMN2 Missense_Mutation p.G616E 0.31 unknown(0) TCGA-NC-A5HO-01 1 247695486 247695486 C G OR2C3 Missense_Mutation p.A110P 0.38 deleterious(0.01) possibly_damaging(0.844) TCGA-NC-A5HO-01 1 248201677 248201677 G T OR2L2 Missense_Mutation p.M36I 0.29 tolerated(0.15) benign(0.005) TCGA-NC-A5HO-01 1 248366915 248366915 C T OR2M3 Silent p.P182P 0.26 TCGA-NC-A5HO-01 1 248366930 248366930 C G OR2M3 Silent p.L187L 0.27 TCGA-NC-A5HO-01 1 248367040 248367040 C G OR2M3 Missense_Mutation p.A224G 0.26 deleterious(0) possibly_damaging(0.835) TCGA-NC-A5HO-01 1 32194236 32194236 T A BAI2 Splice_Site p.X1461_splice 0.51 TCGA-NC-A5HO-01 1 33959126 33959126 C A ZSCAN20 Missense_Mutation p.A595D 0.45 tolerated(0.35) benign(0.034) TCGA-NC-A5HO-01 1 3425125 3425125 C A MEGF6 Nonsense_Mutation p.E553* 0.35 TCGA-NC-A5HO-01 1 36315858 36315858 A T AGO4 Missense_Mutation p.Q759L 0.52 deleterious(0) probably_damaging(0.99) TCGA-NC-A5HO-01 1 57480982 57480982 C A DAB1 Missense_Mutation p.A340S 0.52 tolerated(0.93) benign(0.33) TCGA-NC-A5HO-01 20 2844823 2844823 A T VPS16 Splice_Site p.X538_splice 0.28 TCGA-NC-A5HO-01 20 44587981 44587981 G A ZNF335 Silent p.S704S 0.22 TCGA-NC-A5HO-01 20 44639251 44639251 C T MMP9 Silent p.V167V 0.29 TCGA-NC-A5HO-01 20 44640803 44640803 C G MMP9 Missense_Mutation p.S342W 0.23 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HO-01 20 45242264 45242264 G C SLC13A3 Missense_Mutation p.P71R 0.38 deleterious(0) probably_damaging(1) TCGA-NC-A5HO-01 20 62331780 62331780 G A ARFRP1 3'UTR 0.23 TCGA-NC-A5HO-01 21 28315801 28315801 C A ADAMTS5 Missense_Mutation p.D435Y 0.43 deleterious(0) probably_damaging(0.954) TCGA-NC-A5HO-01 21 31691680 31691680 G A KRTAP26-1 3'UTR 0.17 TCGA-NC-A5HO-01 21 37581174 37581174 A G DOPEY2 Missense_Mutation p.Y218C 0.14 deleterious(0.01) benign(0.049) TCGA-NC-A5HO-01 22 26688727 26688727 G T SEZ6L Silent p.A150A 0.31 TCGA-NC-A5HO-01 22 40798182 40798182 G C SGSM3 Missense_Mutation p.E44Q 0.49 tolerated(0.05) benign(0.323) TCGA-NC-A5HO-01 2 11780699 11780699 G T GREB1 3'UTR 0.27 TCGA-NC-A5HO-01 2 118583083 118583083 G C DDX18 Missense_Mutation p.G477R 0.26 deleterious(0) probably_damaging(0.978) TCGA-NC-A5HO-01 2 119914420 119914420 G C C1QL2 Missense_Mutation p.N274K 0.30 deleterious(0.01) probably_damaging(0.992) TCGA-NC-A5HO-01 2 131521383 131521383 G T AMER3 Nonsense_Mutation p.G580* 0.33 TCGA-NC-A5HO-01 2 138033519 138033519 G T THSD7B Missense_Mutation p.C808F 0.19 deleterious(0) possibly_damaging(0.506) TCGA-NC-A5HO-01 2 138033520 138033520 C A THSD7B Nonsense_Mutation p.C808* 0.18 TCGA-NC-A5HO-01 2 141083344 141083344 G C LRP1B Silent p.V4109V 0.22 TCGA-NC-A5HO-01 2 141093298 141093298 C A LRP1B Missense_Mutation p.W4001L 0.32 benign(0.307) TCGA-NC-A5HO-01 2 141214061 141214061 T C LRP1B Missense_Mutation p.D3309G 0.25 possibly_damaging(0.539) TCGA-NC-A5HO-01 2 158115375 158115375 C T GALNT5 Nonsense_Mutation p.Q261* 0.27 TCGA-NC-A5HO-01 2 160255379 160255379 C A BAZ2B Silent p.A975A 0.25 TCGA-NC-A5HO-01 2 166903443 166903443 A G SCN1A Missense_Mutation p.L405S 0.33 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HO-01 2 167138218 167138218 C A SCN9A Missense_Mutation p.R681I 0.23 tolerated(0.78) benign(0.003) TCGA-NC-A5HO-01 2 167301348 167301348 A T SCN7A Nonsense_Mutation p.L517* 0.31 TCGA-NC-A5HO-01 2 169830242 169830242 C G ABCB11 Missense_Mutation p.D473H 0.31 deleterious(0) probably_damaging(0.979) TCGA-NC-A5HO-01 2 171914709 171914709 T C TLK1 Splice_Site p.X136_splice 0.29 TCGA-NC-A5HO-01 2 179464097 179464097 G A TTN Missense_Mutation p.P18808L 0.49 TCGA-NC-A5HO-01 2 179583305 179583305 T A TTN Missense_Mutation p.R8176S 0.47 TCGA-NC-A5HO-01 2 179603082 179603082 G C TTN Missense_Mutation p.P4700A 0.42 TCGA-NC-A5HO-01 2 179612474 179612474 G T TTN Intron 0.44 TCGA-NC-A5HO-01 2 179669312 179669312 C T TTN Missense_Mutation p.G20S 0.25 TCGA-NC-A5HO-01 2 207557983 207557983 C T DYTN Missense_Mutation p.R299H 0.52 tolerated(0.13) benign(0.006) TCGA-NC-A5HO-01 2 208811126 208811126 G A PLEKHM3 Missense_Mutation p.R553C 0.46 deleterious(0) probably_damaging(1) TCGA-NC-A5HO-01 2 219870896 219870896 C T CCDC108 Nonsense_Mutation p.W1590* 0.43 TCGA-NC-A5HO-01 2 240968953 240968953 C A OR6B2 Missense_Mutation p.K298N 0.29 deleterious(0) probably_damaging(0.98) TCGA-NC-A5HO-01 2 32602673 32602673 G A BIRC6 Missense_Mutation p.V115M 0.24 possibly_damaging(0.618) TCGA-NC-A5HO-01 2 33810502 33810502 C T FAM98A Missense_Mutation p.G300S 0.27 deleterious(0.01) probably_damaging(0.967) TCGA-NC-A5HO-01 2 48906703 48906703 T C STON1-GTF2A1L 3'UTR 0.38 TCGA-NC-A5HO-01 2 72362292 72362292 G A CYP26B1 Missense_Mutation p.P229L 0.07 deleterious(0) probably_damaging(1) TCGA-NC-A5HO-01 2 72362319 72362319 T A CYP26B1 Missense_Mutation p.N220I 0.08 deleterious(0) probably_damaging(1) TCGA-NC-A5HO-01 2 73800416 73800416 A T ALMS1 Missense_Mutation p.R3803S 0.35 probably_damaging(0.999) TCGA-NC-A5HO-01 2 89544312 89544312 C T IGKV2-30 Silent p.E104E 0.29 TCGA-NC-A5HO-01 2 90108895 90108895 T A IGKV6D-41 Missense_Mutation p.Y54N 0.31 tolerated(0.36) benign(0) TCGA-NC-A5HO-01 3 100962676 100962676 C A IMPG2 Missense_Mutation p.M833I 0.31 tolerated(0.17) benign(0.002) TCGA-NC-A5HO-01 3 108330018 108330018 T C DZIP3 Intron 0.28 TCGA-NC-A5HO-01 3 109052780 109052780 T A DPPA4 Missense_Mutation p.I39F 0.27 tolerated(0.44) benign(0.022) TCGA-NC-A5HO-01 3 111997641 111997641 G T SLC9C1 Missense_Mutation p.P85T 0.26 deleterious(0) probably_damaging(1) TCGA-NC-A5HO-01 3 113120447 113120447 T G WDR52 Missense_Mutation p.N437T 0.38 tolerated(1) possibly_damaging(0.72) TCGA-NC-A5HO-01 3 119367138 119367138 G T POPDC2 Silent p.A326A 0.38 TCGA-NC-A5HO-01 3 121351281 121351281 C A HCLS1 Missense_Mutation p.D380Y 0.27 deleterious(0) possibly_damaging(0.861) TCGA-NC-A5HO-01 3 122645333 122645333 G A SEMA5B Missense_Mutation p.R402C 0.25 tolerated(0.07) probably_damaging(0.998) TCGA-NC-A5HO-01 3 124438297 124438297 C A RP11-71H17.7 5'Flank 0.29 TCGA-NC-A5HO-01 3 1369162 1369162 G T CNTN6 Missense_Mutation p.G369W 0.40 deleterious(0) probably_damaging(1) TCGA-NC-A5HO-01 3 154145498 154145498 C G GPR149 Splice_Site p.X328_splice 0.22 TCGA-NC-A5HO-01 3 167189656 167189656 A G SERPINI2 Intron 0.20 TCGA-NC-A5HO-01 3 170805200 170805200 T C TNIK Silent p.P939P 0.60 TCGA-NC-A5HO-01 3 176765125 176765125 T C TBL1XR1 Missense_Mutation p.K276R 0.14 tolerated(0.09) benign(0.119) TCGA-NC-A5HO-01 3 184002827 184002827 C A ECE2 Missense_Mutation p.P479H 0.66 deleterious(0.03) probably_damaging(0.994) TCGA-NC-A5HO-01 3 195778689 195778689 A G TFRC 3'UTR 0.18 TCGA-NC-A5HO-01 3 197670878 197670878 G C IQCG Missense_Mutation p.S18C 0.61 deleterious_low_confidence(0.01) possibly_damaging(0.847) TCGA-NC-A5HO-01 3 35763193 35763193 C A ARPP21 Missense_Mutation p.S330R 0.44 deleterious(0.05) probably_damaging(1) TCGA-NC-A5HO-01 3 52469775 52469775 G A SEMA3G Silent p.C731C 0.51 TCGA-NC-A5HO-01 3 97984036 97984036 C A OR5H6 Missense_Mutation p.P303H 0.25 deleterious(0) probably_damaging(0.97) TCGA-NC-A5HO-01 3 97984040 97984040 G C OR5H6 Missense_Mutation p.M304I 0.27 tolerated(0.58) benign(0) TCGA-NC-A5HO-01 3 98073064 98073064 T A OR5K4 Missense_Mutation p.Y123N 0.27 deleterious(0) probably_damaging(0.986) TCGA-NC-A5HO-01 3 9979724 9979724 C T CRELD1 Nonsense_Mutation p.Q132* 0.42 TCGA-NC-A5HO-01 4 100803135 100803135 T A LAMTOR3 3'UTR 0.45 TCGA-NC-A5HO-01 4 104074383 104074383 C G CENPE Missense_Mutation p.D1020H 0.37 benign(0.008) TCGA-NC-A5HO-01 4 123280742 123280742 G T KIAA1109 Missense_Mutation p.R4889L 0.41 possibly_damaging(0.851) TCGA-NC-A5HO-01 4 123283266 123283266 G C KIAA1109 Missense_Mutation p.R4961T 0.33 probably_damaging(0.999) TCGA-NC-A5HO-01 4 139140496 139140496 C A SLC7A11 Missense_Mutation p.A224S 0.46 tolerated(0.44) benign(0.306) TCGA-NC-A5HO-01 4 158255171 158255171 T G GRIA2 Missense_Mutation p.W389G 0.44 deleterious(0.01) probably_damaging(1) TCGA-NC-A5HO-01 4 166986926 166986926 T G TLL1 Missense_Mutation p.V700G 0.38 deleterious(0.01) possibly_damaging(0.825) TCGA-NC-A5HO-01 4 187201512 187201512 C A F11 Missense_Mutation p.P334Q 0.40 tolerated(0.28) possibly_damaging(0.88) TCGA-NC-A5HO-01 4 48563544 48563544 T C FRYL Missense_Mutation p.Y1269C 0.36 tolerated(0.18) benign(0.002) TCGA-NC-A5HO-01 4 62845291 62845291 C A LPHN3 Missense_Mutation p.A871E 0.33 tolerated(1) benign(0.001) TCGA-NC-A5HO-01 4 69972921 69972921 C G UGT2B7 Missense_Mutation p.P344R 0.34 deleterious(0) probably_damaging(1) TCGA-NC-A5HO-01 4 72634102 72634102 C A GC Missense_Mutation p.Q78H 0.28 deleterious(0) possibly_damaging(0.536) TCGA-NC-A5HO-01 4 89198354 89198362 GTCAACAGA - PPM1K In_Frame_Del p.L160_L162del 0.23 TCGA-NC-A5HO-01 5 11364969 11364969 C G CTNND2 Missense_Mutation p.G404A 0.25 deleterious(0.02) benign(0.001) TCGA-NC-A5HO-01 5 114499430 114499430 T A TRIM36 Missense_Mutation p.E28V 0.28 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HO-01 5 126253764 126253764 C T MARCH3 Missense_Mutation p.V34M 0.33 tolerated_low_confidence(0.15) benign(0.011) TCGA-NC-A5HO-01 5 129520861 129520861 G C CHSY3 Missense_Mutation p.G676R 0.32 tolerated(0.2) benign(0.063) TCGA-NC-A5HO-01 5 134782546 134782546 C - C5orf20 Frame_Shift_Del p.A85Qfs*89 0.22 TCGA-NC-A5HO-01 5 140256514 140256514 A T PCDHA12 Missense_Mutation p.K486M 0.26 deleterious_low_confidence(0) possibly_damaging(0.84) TCGA-NC-A5HO-01 5 140812237 140812237 G T PCDHGA12 Silent p.A637A 0.31 TCGA-NC-A5HO-01 5 140870008 140870008 G T PCDHGC5 Nonsense_Mutation p.E401* 0.32 TCGA-NC-A5HO-01 5 145719728 145719728 G T POU4F3 Silent p.P246P 0.18 TCGA-NC-A5HO-01 5 180057793 180057793 C T FLT4 Silent p.Q54Q 0.34 TCGA-NC-A5HO-01 5 180166282 180166282 G C OR2Y1 Silent p.L259L 0.28 TCGA-NC-A5HO-01 5 1879835 1879835 G A IRX4 Silent p.G173G 0.38 TCGA-NC-A5HO-01 5 21755737 21755737 C T CDH12 Silent p.A616A 0.19 TCGA-NC-A5HO-01 5 35040757 35040757 G T AGXT2 Silent p.R34R 0.30 TCGA-NC-A5HO-01 5 45462078 45462078 G T HCN1 Missense_Mutation p.A294E 0.32 deleterious(0) probably_damaging(0.984) TCGA-NC-A5HO-01 5 58285744 58285744 T C PDE4D Silent p.E430E 0.30 TCGA-NC-A5HO-01 5 63256562 63256562 C A HTR1A Missense_Mutation p.A329S 0.25 tolerated(0.61) benign(0.062) TCGA-NC-A5HO-01 5 70810793 70810793 C A BDP1 Nonsense_Mutation p.S1498* 0.24 TCGA-NC-A5HO-01 5 79089432 79089432 A T CMYA5 Nonsense_Mutation p.R3988* 0.25 TCGA-NC-A5HO-01 5 79752805 79752805 C T ZFYVE16 Silent p.S1279S 0.24 TCGA-NC-A5HO-01 5 82815579 82815579 A T VCAN Missense_Mutation p.E485V 0.29 deleterious(0) possibly_damaging(0.776) TCGA-NC-A5HO-01 5 95746595 95746595 G T PCSK1 Silent p.I326I 0.38 TCGA-NC-A5HO-01 6 117687433 117687433 G T ROS1 Missense_Mutation p.T873K 0.28 deleterious(0.03) possibly_damaging(0.642) TCGA-NC-A5HO-01 6 135306505 135306505 C A HBS1L Missense_Mutation p.R489I 0.31 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HO-01 6 139565741 139565741 C A TXLNB Missense_Mutation p.M419I 0.29 deleterious(0) probably_damaging(0.973) TCGA-NC-A5HO-01 6 160491061 160491061 A G IGF2R Missense_Mutation p.I1472V 0.27 tolerated(0.2) possibly_damaging(0.58) TCGA-NC-A5HO-01 6 165715753 165715753 C A C6orf118 Missense_Mutation p.G20C 0.34 deleterious_low_confidence(0.02) unknown(0) TCGA-NC-A5HO-01 6 165801855 165801855 G - PDE10A Frame_Shift_Del p.L582Wfs*33 0.22 TCGA-NC-A5HO-01 6 167789513 167789513 G A TCP10 Missense_Mutation p.P210L 0.22 tolerated(0.23) probably_damaging(0.943) TCGA-NC-A5HO-01 6 24145906 24145906 A T NRSN1 Missense_Mutation p.Q107L 0.31 tolerated(0.2) benign(0.068) TCGA-NC-A5HO-01 6 24403185 24403185 G A MRS2 5'UTR 0.40 TCGA-NC-A5HO-01 6 45870960 45870960 G A CLIC5 Silent p.I366I 0.27 TCGA-NC-A5HO-01 6 4999021 4999021 T A RPP40 Missense_Mutation p.E163V 0.43 tolerated(0.11) possibly_damaging(0.464) TCGA-NC-A5HO-01 6 54792354 54792354 G C FAM83B Missense_Mutation p.G220R 0.27 deleterious(0) probably_damaging(1) TCGA-NC-A5HO-01 6 63991090 63991090 A G LGSN Silent p.G122G 0.27 TCGA-NC-A5HO-01 6 86267703 86267703 T C SNX14 Missense_Mutation p.R209G 0.30 deleterious(0.01) benign(0.054) TCGA-NC-A5HO-01 6 96652028 96652028 C A FUT9 Missense_Mutation p.H333N 0.28 tolerated(0.14) benign(0.444) TCGA-NC-A5HO-01 7 102213013 102213013 C A POLR2J3 5'Flank 0.15 TCGA-NC-A5HO-01 7 102952883 102952883 C A PMPCB 3'UTR 0.32 TCGA-NC-A5HO-01 7 116869821 116869821 C T ST7 Nonsense_Mutation p.Q448* 0.29 TCGA-NC-A5HO-01 7 141438951 141438951 A T SSBP1 5'UTR 0.31 TCGA-NC-A5HO-01 7 141635705 141635705 A G CLEC5A Missense_Mutation p.L85S 0.33 deleterious(0) possibly_damaging(0.901) TCGA-NC-A5HO-01 7 143573615 143573615 C G FAM115A Silent p.L29L 0.29 TCGA-NC-A5HO-01 7 149497401 149497401 C T SSPO RNA 0.30 TCGA-NC-A5HO-01 7 43916578 43916578 G A URGCP Silent p.P828P 0.46 TCGA-NC-A5HO-01 7 44800031 44800031 G T ZMIZ2 Missense_Mutation p.R360L 0.43 deleterious(0) benign(0.202) TCGA-NC-A5HO-01 7 47866999 47867000 - TCAGCT PKD1L1 In_Frame_Ins p.L2267_R2268insKL 0.35 TCGA-NC-A5HO-01 7 57188077 57188077 T C ZNF479 Missense_Mutation p.R349G 0.29 tolerated(1) benign(0) TCGA-NC-A5HO-01 7 64452376 64452376 T A ERV3-1 Missense_Mutation p.K343N 0.17 deleterious(0.01) possibly_damaging(0.725) TCGA-NC-A5HO-01 7 87080943 87080943 G T ABCB4 Missense_Mutation p.A235E 0.32 deleterious(0.01) possibly_damaging(0.857) TCGA-NC-A5HO-01 7 99764267 99764267 C A GAL3ST4 Missense_Mutation p.R96L 0.29 tolerated(0.1) benign(0.206) TCGA-NC-A5HO-01 8 106573591 106573591 G T ZFPM2 Missense_Mutation p.G101V 0.30 tolerated(0.06) benign(0.184) TCGA-NC-A5HO-01 8 120801032 120801032 C T TAF2 Missense_Mutation p.V561M 0.35 deleterious(0.03) possibly_damaging(0.556) TCGA-NC-A5HO-01 8 125989385 125989385 G A ZNF572 Missense_Mutation p.R292Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HO-01 8 13965693 13965693 G C SGCZ Missense_Mutation p.A200G 0.30 deleterious(0.05) possibly_damaging(0.817) TCGA-NC-A5HO-01 8 25337475 25337475 C A CDCA2 Silent p.A289A 0.28 TCGA-NC-A5HO-01 8 2876129 2876129 C A CSMD1 Missense_Mutation p.K2633N 0.25 probably_damaging(0.998) TCGA-NC-A5HO-01 8 38684752 38684752 G C TACC1 Missense_Mutation p.E507Q 0.25 deleterious(0) probably_damaging(0.989) TCGA-NC-A5HO-01 8 65291722 65291722 C A MIR124-2 RNA 0.29 TCGA-NC-A5HO-01 8 71041069 71041069 G T NCOA2 Missense_Mutation p.H1157Q 0.33 tolerated(0.08) benign(0.216) TCGA-NC-A5HO-01 8 75926254 75926254 T C CRISPLD1 Silent p.C181C 0.11 TCGA-NC-A5HO-01 8 8185546 8185546 C A SGK223 Missense_Mutation p.A916S 0.29 benign(0.306) TCGA-NC-A5HO-01 8 88885298 88885298 G T DCAF4L2 Missense_Mutation p.A301D 0.27 tolerated(0.22) benign(0.194) TCGA-NC-A5HO-01 8 90802706 90802706 A T RIPK2 3'UTR 0.22 TCGA-NC-A5HO-01 9 104170581 104170581 G T ZNF189 Missense_Mutation p.Q177H 0.20 deleterious(0) possibly_damaging(0.879) TCGA-NC-A5HO-01 9 107288854 107288854 C A OR13C4 Missense_Mutation p.V213L 0.45 tolerated(1) benign(0.023) TCGA-NC-A5HO-01 9 109690902 109690902 T C ZNF462 Missense_Mutation p.F1570S 0.31 benign(0.083) TCGA-NC-A5HO-01 9 113194236 113194236 G T SVEP1 Nonsense_Mutation p.S1771* 0.58 TCGA-NC-A5HO-01 9 114289615 114289615 G A ZNF483 5'UTR 0.45 TCGA-NC-A5HO-01 9 125273395 125273395 A G OR1J2 Missense_Mutation p.I105M 0.21 tolerated_low_confidence(0.06) benign(0.071) TCGA-NC-A5HO-01 9 127572533 127572533 G A OLFML2A Missense_Mutation p.A601T 0.48 deleterious(0) possibly_damaging(0.798) TCGA-NC-A5HO-01 9 131198150 131198150 A C CERCAM Missense_Mutation p.H585P 0.50 tolerated(0.13) benign(0.007) TCGA-NC-A5HO-01 9 21971208 21971208 C T CDKN2A Splice_Site p.X51_splice 0.45 TCGA-NC-A5HO-01 9 35719212 35719212 C A TLN1 Silent p.T585T 0.35 TCGA-NC-A5HO-01 9 37745870 37745870 A G FRMPD1 Missense_Mutation p.K1281E 0.07 tolerated(0.24) benign(0.004) TCGA-NC-A5HO-01 9 77598583 77598583 T A C9orf41 3'UTR 0.33 TCGA-NC-A5HO-01 9 91949454 91949454 A G SECISBP2 Missense_Mutation p.M300V 0.31 tolerated(0.27) benign(0.059) TCGA-NC-A5HO-01 X 106482227 106482227 A G PIH1D3 Missense_Mutation p.T169A 0.33 deleterious(0.04) probably_damaging(0.986) TCGA-NC-A5HO-01 X 135427213 135427213 A G GPR112 Missense_Mutation p.T450A 0.59 deleterious(0) possibly_damaging(0.551) TCGA-NC-A5HO-01 X 153453547 153490665 X:153453547-153490665 - OPN1MW large deletion 0.24 TCGA-NC-A5HO-01 X 27765776 27765776 G T DCAF8L2 Missense_Mutation p.W255L 0.16 deleterious(0) probably_damaging(0.982) TCGA-NC-A5HO-01 X 53117026 53117026 G A TSPYL2 Missense_Mutation p.E663K 0.42 deleterious_low_confidence(0.05) unknown(0) TCGA-NC-A5HO-01 X 64139033 64139033 G - ZC4H2 Frame_Shift_Del p.I151Sfs*36 0.29 TCGA-NC-A5HO-01 X 77289308 77289308 C A ATP7A Missense_Mutation p.A1167D 0.31 tolerated(0.18) benign(0.083) TCGA-NC-A5HO-01 X 83588849 83588849 T A HDX Missense_Mutation p.K581I 0.35 deleterious(0) possibly_damaging(0.786) TCGA-NC-A5HO-01 X 88008412 88008412 C A CPXCR1 5'UTR 0.35 TCGA-NC-A5HP-01 10 101486836 101486836 G A COX15 Silent p.R157R 0.27 TCGA-NC-A5HP-01 10 104378836 104378836 C T SUFU Intron 0.26 TCGA-NC-A5HP-01 10 108338924 108338934 TGCTTTCAGAG - SORCS1 Frame_Shift_Del p.H1149Qfs*8 0.27 TCGA-NC-A5HP-01 10 117884967 117884967 T A GFRA1 Missense_Mutation p.T179S 0.37 tolerated(0.34) benign(0.193) TCGA-NC-A5HP-01 10 118313289 118313289 G - PNLIP Frame_Shift_Del p.G171Vfs*35 0.25 TCGA-NC-A5HP-01 10 129900918 129900918 C G MKI67 Silent p.A3062A 0.33 TCGA-NC-A5HP-01 10 135053209 135053209 G T VENTX Missense_Mutation p.A91S 0.16 tolerated(0.11) benign(0.021) TCGA-NC-A5HP-01 10 135086011 135086011 G C ADAM8 Missense_Mutation p.P262A 0.28 tolerated(0.06) benign(0.281) TCGA-NC-A5HP-01 10 16873292 16873292 G A CUBN Missense_Mutation p.S3496F 0.63 deleterious(0.01) probably_damaging(0.936) TCGA-NC-A5HP-01 10 27688162 27688162 C A PTCHD3 Silent p.G455G 0.25 TCGA-NC-A5HP-01 10 43597863 43597863 C T RET Silent p.C137C 0.28 TCGA-NC-A5HP-01 10 45430397 45430397 T A TMEM72 Missense_Mutation p.S215T 0.35 tolerated(0.7) benign(0.004) TCGA-NC-A5HP-01 10 50818899 50818899 T C SLC18A3 Missense_Mutation p.I38T 0.20 deleterious(0.01) possibly_damaging(0.861) TCGA-NC-A5HP-01 10 50901954 50901954 G T C10orf53 Intron 0.39 TCGA-NC-A5HP-01 10 55587214 55587214 G C PCDH15 Missense_Mutation p.P1436A 0.36 tolerated_low_confidence(0.12) benign(0.029) TCGA-NC-A5HP-01 10 60556121 60556121 G T BICC1 Nonsense_Mutation p.E401* 0.39 TCGA-NC-A5HP-01 10 71008464 71008464 G T HKDC1 Missense_Mutation p.C517F 0.25 tolerated(0.27) benign(0.005) TCGA-NC-A5HP-01 10 72358360 72358360 G T PRF1 Missense_Mutation p.R373S 0.47 tolerated(0.07) probably_damaging(0.929) TCGA-NC-A5HP-01 10 73956749 73956749 T C ASCC1 Splice_Site p.X132_splice 0.48 TCGA-NC-A5HP-01 10 7765528 7765528 C T ITIH2 Nonsense_Mutation p.Q328* 0.33 TCGA-NC-A5HP-01 10 81056152 81056152 C T ZMIZ1 Intron 0.31 TCGA-NC-A5HP-01 10 83635333 83635333 G T NRG3 Silent p.L79L 0.29 TCGA-NC-A5HP-01 10 86273432 86273432 G T CCSER2 3'UTR 0.25 TCGA-NC-A5HP-01 10 87406839 87406839 C A GRID1 Intron 0.31 TCGA-NC-A5HP-01 10 89118001 89118001 T A NUTM2D 5'UTR 0.14 TCGA-NC-A5HP-01 10 90431642 90431642 G T LIPF Missense_Mutation p.A207S 0.31 deleterious(0.04) probably_damaging(0.914) TCGA-NC-A5HP-01 11 102401478 102401478 T C MMP7 5'UTR 0.39 TCGA-NC-A5HP-01 11 104774181 104774181 C G RP11-693N9.2 RNA 0.24 TCGA-NC-A5HP-01 11 104905114 104905114 G T CASP1 Missense_Mutation p.T32K 0.38 tolerated(1) benign(0.001) TCGA-NC-A5HP-01 11 106579350 106579350 C A GUCY1A2 Missense_Mutation p.V658F 0.26 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HP-01 11 113264371 113264371 G T ANKK1 Missense_Mutation p.K118N 0.31 tolerated(0.1) benign(0.001) TCGA-NC-A5HP-01 11 114270920 114270920 C T C11orf71 Missense_Mutation p.R45K 0.24 deleterious_low_confidence(0.03) benign(0.08) TCGA-NC-A5HP-01 11 114453615 114453615 G T NXPE4 Silent p.I75I 0.36 TCGA-NC-A5HP-01 11 121000814 121000814 G C TECTA Missense_Mutation p.Q945H 0.23 tolerated(0.55) benign(0.009) TCGA-NC-A5HP-01 11 122827223 122827223 A T C11orf63 Missense_Mutation p.Y650F 0.32 deleterious(0.05) possibly_damaging(0.823) TCGA-NC-A5HP-01 11 123777216 123777216 C A OR8D4 Silent p.P26P 0.31 TCGA-NC-A5HP-01 11 125616189 125616189 C A PATE1 5'UTR 0.29 TCGA-NC-A5HP-01 11 15197392 15197392 G T INSC Silent p.L101L 0.19 TCGA-NC-A5HP-01 11 19255998 19255998 C A E2F8 Silent p.V279V 0.32 TCGA-NC-A5HP-01 11 26743391 26743391 A T SLC5A12 5'UTR 0.17 TCGA-NC-A5HP-01 11 44069924 44069924 T G ACCSL Missense_Mutation p.L113R 0.40 tolerated(0.36) benign(0.212) TCGA-NC-A5HP-01 11 46776518 46776518 T A CKAP5 Missense_Mutation p.N1597Y 0.30 deleterious(0.01) possibly_damaging(0.547) TCGA-NC-A5HP-01 11 47290294 47290294 C A NR1H3 3'UTR 0.19 TCGA-NC-A5HP-01 11 47861518 47861518 C A NUP160 Nonsense_Mutation p.G209* 0.25 TCGA-NC-A5HP-01 11 55541605 55541605 G C OR5D13 Missense_Mutation p.R231P 0.35 tolerated(1) benign(0) TCGA-NC-A5HP-01 11 55563621 55563621 C A OR5D14 Missense_Mutation p.P197H 0.32 deleterious(0.02) possibly_damaging(0.726) TCGA-NC-A5HP-01 11 55606781 55606781 C G OR5D16 Missense_Mutation p.S185C 0.32 deleterious(0) probably_damaging(0.964) TCGA-NC-A5HP-01 11 55735921 55735921 C A OR10AG1 Missense_Mutation p.G7W 0.33 deleterious(0.01) possibly_damaging(0.832) TCGA-NC-A5HP-01 11 55872953 55872953 C A OR8H2 Silent p.I145I 0.29 TCGA-NC-A5HP-01 11 56020135 56020135 G T OR5T3 Missense_Mutation p.V154L 0.38 deleterious(0.02) benign(0.111) TCGA-NC-A5HP-01 11 57076583 57076583 C G TNKS1BP1 Missense_Mutation p.R1201T 0.32 tolerated(0.15) benign(0.408) TCGA-NC-A5HP-01 11 5841754 5841754 C G OR52N2 Nonsense_Mutation p.Y63* 0.38 TCGA-NC-A5HP-01 11 58478191 58478191 G T GLYAT Silent p.A120A 0.38 TCGA-NC-A5HP-01 11 58480270 58480270 T C GLYAT Silent p.P93P 0.33 TCGA-NC-A5HP-01 11 60064763 60064763 G A MS4A4A Missense_Mutation p.V99M 0.36 tolerated(0.08) possibly_damaging(0.523) TCGA-NC-A5HP-01 11 61490395 61490395 C A DAGLA Silent p.T124T 0.33 TCGA-NC-A5HP-01 11 62292303 62292303 C T AHNAK Missense_Mutation p.E3196K 0.37 probably_damaging(0.916) TCGA-NC-A5HP-01 11 66113470 66113470 T G B3GNT1 3'UTR 0.30 TCGA-NC-A5HP-01 11 67790229 67790229 G A ALDH3B1 Silent p.Q370Q 0.36 TCGA-NC-A5HP-01 11 7064407 7064407 G T NLRP14 Nonsense_Mutation p.E384* 0.19 TCGA-NC-A5HP-01 11 7324383 7324383 C A SYT9 Missense_Mutation p.L87M 0.39 deleterious(0.04) possibly_damaging(0.736) TCGA-NC-A5HP-01 11 75480093 75480093 G T DGAT2 Missense_Mutation p.E19D 0.47 tolerated_low_confidence(0.53) benign(0.004) TCGA-NC-A5HP-01 11 8248540 8248540 C T LMO1 Missense_Mutation p.C116Y 0.27 deleterious(0) probably_damaging(1) TCGA-NC-A5HP-01 11 86106413 86106413 A T CCDC81 Missense_Mutation p.E198V 0.32 deleterious(0.04) benign(0.128) TCGA-NC-A5HP-01 12 100904715 100904715 G T NR1H4 Missense_Mutation p.W90L 0.29 tolerated(0.62) probably_damaging(0.987) TCGA-NC-A5HP-01 12 101295616 101295616 C A ANO4 Missense_Mutation p.P18Q 0.23 tolerated_low_confidence(0.29) benign(0.023) TCGA-NC-A5HP-01 12 101477498 101477498 G A ANO4 Missense_Mutation p.E445K 0.21 tolerated(0.35) probably_damaging(0.929) TCGA-NC-A5HP-01 12 108620941 108620941 G T WSCD2 Missense_Mutation p.D327Y 0.29 deleterious(0) possibly_damaging(0.778) TCGA-NC-A5HP-01 12 112699141 112699141 G C HECTD4 Silent p.L801L 0.32 TCGA-NC-A5HP-01 12 116446649 116446649 C A MED13L Missense_Mutation p.R523S 0.50 tolerated(0.6) unknown(0) TCGA-NC-A5HP-01 12 120210676 120210676 C A CIT Missense_Mutation p.Q660H 0.38 deleterious(0) probably_damaging(0.995) TCGA-NC-A5HP-01 12 132401515 132401515 G T ULK1 Missense_Mutation p.R697L 0.37 deleterious(0.01) probably_damaging(0.954) TCGA-NC-A5HP-01 12 132497617 132497617 C T EP400 Missense_Mutation p.L1169F 0.08 unknown(0) TCGA-NC-A5HP-01 12 132514585 132514585 G A EP400 Missense_Mutation p.R1879H 0.17 unknown(0) TCGA-NC-A5HP-01 12 15131042 15131042 C A PDE6H Silent p.R32R 0.33 TCGA-NC-A5HP-01 12 23999114 23999114 T A SOX5 Missense_Mutation p.N95I 0.39 tolerated(0.09) benign(0.007) TCGA-NC-A5HP-01 12 2595323 2595323 A T CACNA1C Missense_Mutation p.I271F 0.39 deleterious(0) probably_damaging(0.982) TCGA-NC-A5HP-01 12 27156257 27156257 G C TM7SF3 Missense_Mutation p.A53G 0.47 tolerated(0.07) benign(0.017) TCGA-NC-A5HP-01 12 2797810 2797810 C G CACNA1C Silent p.S2042S 0.31 TCGA-NC-A5HP-01 12 29669316 29669316 G C TMTC1 Nonsense_Mutation p.S758* 0.35 TCGA-NC-A5HP-01 12 31820894 31820894 A T METTL20 Silent p.T253T 0.11 TCGA-NC-A5HP-01 12 3931054 3931054 C A PARP11 Missense_Mutation p.W178L 0.29 deleterious(0) possibly_damaging(0.784) TCGA-NC-A5HP-01 12 41900268 41900268 A G PDZRN4 Missense_Mutation p.K285R 0.33 tolerated(0.26) benign(0.198) TCGA-NC-A5HP-01 12 42491380 42491380 C T GXYLT1 Missense_Mutation p.R342Q 0.32 deleterious(0) probably_damaging(0.985) TCGA-NC-A5HP-01 12 46244586 46244586 C G ARID2 Missense_Mutation p.Q894E 0.29 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-NC-A5HP-01 12 46322013 46322013 C T SCAF11 Missense_Mutation p.E491K 0.40 tolerated(0.12) benign(0.002) TCGA-NC-A5HP-01 12 4719361 4719362 - A DYRK4 Frame_Shift_Ins p.R355Kfs*16 0.24 TCGA-NC-A5HP-01 12 4919774 4919774 C A KCNA6 Silent p.V189V 0.37 TCGA-NC-A5HP-01 12 49360134 49360134 G A WNT10B Missense_Mutation p.S305L 0.31 tolerated(0.09) benign(0.34) TCGA-NC-A5HP-01 12 52845900 52845900 G T KRT6B 5'UTR 0.22 TCGA-NC-A5HP-01 12 53607281 53607281 T C RARG Silent p.G339G 0.29 TCGA-NC-A5HP-01 12 54350338 54350338 C G HOXC12 Silent p.L279L 0.38 TCGA-NC-A5HP-01 12 55038479 55038479 C A DCD 3'UTR 0.35 TCGA-NC-A5HP-01 12 55420662 55420662 C A NEUROD4 Missense_Mutation p.Q147K 0.26 tolerated(1) probably_damaging(0.964) TCGA-NC-A5HP-01 12 57483098 57483098 G T NAB2 Missense_Mutation p.G15V 0.36 tolerated_low_confidence(0.24) benign(0.012) TCGA-NC-A5HP-01 12 57881744 57881744 T C MARS 5'UTR 0.31 TCGA-NC-A5HP-01 12 59268298 59268298 A G LRIG3 Missense_Mutation p.F918S 0.47 deleterious(0.02) possibly_damaging(0.513) TCGA-NC-A5HP-01 12 62798002 62798002 G C USP15 Missense_Mutation p.Q931H 0.18 tolerated(0.07) probably_damaging(0.937) TCGA-NC-A5HP-01 12 64436680 64436680 C G SRGAP1 Silent p.V200V 0.22 TCGA-NC-A5HP-01 12 64437312 64437312 C T SRGAP1 Missense_Mutation p.S253L 0.24 tolerated(0.08) benign(0.068) TCGA-NC-A5HP-01 12 65514297 65514297 A G WIF1 Missense_Mutation p.M63T 0.16 deleterious(0.01) probably_damaging(0.98) TCGA-NC-A5HP-01 12 69218186 69218189 CCTT - MDM2 Frame_Shift_Del p.H134Qfs*73 0.37 TCGA-NC-A5HP-01 12 72058186 72058186 G C THAP2 5'UTR 0.38 TCGA-NC-A5HP-01 12 78513135 78513135 C A NAV3 Silent p.P1053P 0.19 TCGA-NC-A5HP-01 12 86199312 86199312 C G RASSF9 Missense_Mutation p.R159T 0.20 deleterious(0) probably_damaging(0.921) TCGA-NC-A5HP-01 12 9147767 9147767 G C KLRG1 Missense_Mutation p.M80I 0.29 tolerated(0.17) benign(0.007) TCGA-NC-A5HP-01 13 101712316 101712316 G T NALCN Missense_Mutation p.Q1587K 0.20 tolerated(0.29) benign(0.014) TCGA-NC-A5HP-01 13 107220037 107220037 G A ARGLU1 Silent p.S77S 0.35 TCGA-NC-A5HP-01 13 113783887 113783887 C A F10 Nonsense_Mutation p.Y64* 0.13 TCGA-NC-A5HP-01 13 19751704 19751704 C G TUBA3C Missense_Mutation p.S140T 0.21 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-NC-A5HP-01 13 19753680 19753680 C A TUBA3C Silent p.V9V 0.46 TCGA-NC-A5HP-01 13 25744140 25744140 C T AMER2 Missense_Mutation p.G540R 0.19 tolerated(0.39) possibly_damaging(0.888) TCGA-NC-A5HP-01 13 31232472 31232472 A T USPL1 Missense_Mutation p.K753M 0.35 deleterious(0) probably_damaging(0.989) TCGA-NC-A5HP-01 13 31903814 31903814 G T B3GALTL 3'UTR 0.12 TCGA-NC-A5HP-01 13 33638186 33638186 A C KL Missense_Mutation p.T968P 0.12 tolerated(0.27) benign(0.001) TCGA-NC-A5HP-01 13 36241567 36241567 C T NBEA Missense_Mutation p.P2820S 0.38 deleterious(0.04) benign(0.437) TCGA-NC-A5HP-01 13 38154065 38154065 C A POSTN Missense_Mutation p.W531C 0.23 deleterious(0) probably_damaging(0.969) TCGA-NC-A5HP-01 13 38154066 38154066 C G POSTN Missense_Mutation p.W531S 0.24 deleterious(0.01) probably_damaging(0.94) TCGA-NC-A5HP-01 13 41705194 41705194 T A KBTBD6 Missense_Mutation p.Y485F 0.40 tolerated(0.68) benign(0.184) TCGA-NC-A5HP-01 13 42306254 42306254 C A VWA8 Missense_Mutation p.V822F 0.18 deleterious(0) probably_damaging(0.993) TCGA-NC-A5HP-01 13 49281486 49281486 C T CYSLTR2 Missense_Mutation p.S178F 0.20 tolerated(0.63) benign(0.328) TCGA-NC-A5HP-01 13 93518769 93518769 C A GPC5 3'UTR 0.48 TCGA-NC-A5HP-01 13 93518770 93518770 C A GPC5 3'UTR 0.47 TCGA-NC-A5HP-01 13 96293566 96293566 T A DZIP1 Nonsense_Mutation p.K194* 0.39 TCGA-NC-A5HP-01 13 96438246 96438246 C G DNAJC3 Missense_Mutation p.R377G 0.19 deleterious(0.01) benign(0.04) TCGA-NC-A5HP-01 13 98645460 98645460 C T IPO5 Silent p.T316T 0.44 TCGA-NC-A5HP-01 14 100384138 100384138 G T EML1 Missense_Mutation p.G610V 0.12 deleterious(0.04) probably_damaging(0.996) TCGA-NC-A5HP-01 14 106174215 106174215 A T IGHA1 Missense_Mutation p.C192S 0.38 tolerated(0.12) possibly_damaging(0.875) TCGA-NC-A5HP-01 14 20586006 20586006 C T OR4K17 Silent p.V147V 0.28 TCGA-NC-A5HP-01 14 20711466 20711466 C A OR11H4 Nonsense_Mutation p.Y172* 0.63 TCGA-NC-A5HP-01 14 22192335 22192335 C A TRAV3 Missense_Mutation p.P37H 0.17 tolerated(0.2) benign(0.047) TCGA-NC-A5HP-01 14 24836218 24836218 G T NFATC4 5'UTR 0.27 TCGA-NC-A5HP-01 14 24910201 24910201 C T KHNYN 3'UTR 0.32 TCGA-NC-A5HP-01 14 28734443 28734443 T C BNIP3P1 RNA 0.44 TCGA-NC-A5HP-01 14 36005008 36005008 C G INSM2 Missense_Mutation p.S517C 0.27 tolerated(0.09) possibly_damaging(0.694) TCGA-NC-A5HP-01 14 44975241 44975241 T A FSCB Missense_Mutation p.Q317L 0.38 deleterious(0.01) possibly_damaging(0.806) TCGA-NC-A5HP-01 14 45478340 45478340 G C FAM179B Missense_Mutation p.K1043N 0.21 tolerated(0.15) benign(0.012) TCGA-NC-A5HP-01 14 47389315 47389315 C A MDGA2 Missense_Mutation p.W713L 0.33 tolerated(0.69) benign(0.242) TCGA-NC-A5HP-01 14 50256240 50256240 G T NEMF Missense_Mutation p.R891S 0.32 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HP-01 14 60194302 60194302 G T RTN1 Nonsense_Mutation p.S367* 0.20 TCGA-NC-A5HP-01 14 69795219 69795219 C G GALNT16 Silent p.L207L 0.30 TCGA-NC-A5HP-01 14 74825410 74825410 G T VRTN Missense_Mutation p.V642L 0.19 deleterious(0.01) benign(0.112) TCGA-NC-A5HP-01 14 94909025 94909025 C A SERPINA11 Missense_Mutation p.R396M 0.23 deleterious(0) probably_damaging(0.987) TCGA-NC-A5HP-01 14 94914663 94914663 C G SERPINA11 Missense_Mutation p.R150P 0.11 tolerated(0.13) benign(0.428) TCGA-NC-A5HP-01 14 95056442 95056442 G T SERPINA5 Missense_Mutation p.E228D 0.36 tolerated(0.18) benign(0.005) TCGA-NC-A5HP-01 14 96134799 96134799 G T TCL6 Intron 0.24 TCGA-NC-A5HP-01 15 22382768 22382768 C A OR4N4 Missense_Mutation p.T99N 0.27 deleterious(0) probably_damaging(0.912) TCGA-NC-A5HP-01 15 23931981 23931981 G T NDN Silent p.V128V 0.48 TCGA-NC-A5HP-01 15 25463902 25463902 C A SNORD115-28 5'Flank 0.26 TCGA-NC-A5HP-01 15 25475847 25475847 C G SNORD115-33 5'Flank 0.44 TCGA-NC-A5HP-01 15 32908310 32908310 C A ARHGAP11A 5'UTR 0.32 TCGA-NC-A5HP-01 15 34158802 34158802 T C AVEN 3'UTR 0.22 TCGA-NC-A5HP-01 15 41229676 41229676 T G DLL4 Silent p.S668S 0.41 TCGA-NC-A5HP-01 15 56736764 56736764 A T MNS1 Nonsense_Mutation p.Y188* 0.39 TCGA-NC-A5HP-01 15 57524908 57524908 A G TCF12 Splice_Site p.X276_splice 0.35 TCGA-NC-A5HP-01 15 60794975 60794975 G A RORA Silent p.D422D 0.19 TCGA-NC-A5HP-01 15 63967219 63967219 C A HERC1 Missense_Mutation p.A2390S 0.44 benign(0.04) TCGA-NC-A5HP-01 15 65943137 65943137 G A SLC24A1 Missense_Mutation p.E884K 0.20 benign(0.157) TCGA-NC-A5HP-01 15 69339821 69339821 C A NOX5 Silent p.I587I 0.18 TCGA-NC-A5HP-01 15 72691006 72691006 G A TMEM202 Missense_Mutation p.A32T 0.21 tolerated(1) benign(0.001) TCGA-NC-A5HP-01 15 85341571 85341571 A T ZNF592 Missense_Mutation p.M868L 0.44 deleterious(0.01) benign(0.047) TCGA-NC-A5HP-01 15 89402075 89402075 C G ACAN Missense_Mutation p.P2087A 0.45 deleterious(0.04) possibly_damaging(0.54) TCGA-NC-A5HP-01 15 89444942 89444942 T G MFGE8 Missense_Mutation p.K237T 0.28 deleterious(0) probably_damaging(0.97) TCGA-NC-A5HP-01 15 90934057 90934057 G A IQGAP1 Missense_Mutation p.R36H 0.16 tolerated(0.1) benign(0.003) TCGA-NC-A5HP-01 16 1398240 1398240 T A BAIAP3 Missense_Mutation p.V1133E 0.21 deleterious(0.01) benign(0.17) TCGA-NC-A5HP-01 16 20331647 20331647 C T GP2 Silent p.E268E 0.21 TCGA-NC-A5HP-01 16 20439150 20439150 C A ACSM5 Missense_Mutation p.P321Q 0.19 deleterious(0) probably_damaging(0.987) TCGA-NC-A5HP-01 16 2222256 2222256 G C TRAF7 Missense_Mutation p.Q180H 0.21 deleterious(0) possibly_damaging(0.778) TCGA-NC-A5HP-01 16 2636676 2636676 G A PDPK1 Splice_Site p.X376_splice 0.19 TCGA-NC-A5HP-01 16 30004576 30004576 G A HIRIP3 Silent p.D541D 0.36 TCGA-NC-A5HP-01 16 31336039 31336039 T A ITGAM Nonsense_Mutation p.L743* 0.34 TCGA-NC-A5HP-01 16 47117564 47117564 G A NETO2 Silent p.T382T 0.19 TCGA-NC-A5HP-01 16 55513514 55513514 C T MMP2 Silent p.V41V 0.32 TCGA-NC-A5HP-01 16 57707378 57707378 G T GPR97 Missense_Mutation p.Q68H 0.36 tolerated(0.15) benign(0.048) TCGA-NC-A5HP-01 16 677567 677567 G T RAB40C Missense_Mutation p.R264L 0.42 deleterious_low_confidence(0.01) benign(0.06) TCGA-NC-A5HP-01 16 67904741 67904741 C T NUTF2 Silent p.F103F 0.35 TCGA-NC-A5HP-01 16 68405986 68405986 C G SMPD3 Silent p.R33R 0.29 TCGA-NC-A5HP-01 16 72142376 72142376 G T DHX38 Missense_Mutation p.R1042L 0.30 deleterious(0) probably_damaging(0.996) TCGA-NC-A5HP-01 16 832040 832040 G T MSLNL Missense_Mutation p.A28D 0.17 probably_damaging(0.958) TCGA-NC-A5HP-01 16 87935559 87935559 G A CA5A Silent p.L193L 0.39 TCGA-NC-A5HP-01 17 27229983 27229983 C T DHRS13 5'UTR 0.33 TCGA-NC-A5HP-01 17 35921296 35921296 C T SYNRG Splice_Site p.X555_splice 0.10 TCGA-NC-A5HP-01 17 42744077 42744078 - A C17orf104 Frame_Shift_Ins p.N268Kfs*11 0.34 TCGA-NC-A5HP-01 17 4437100 4437100 G T SPNS2 Silent p.G432G 0.62 TCGA-NC-A5HP-01 17 45360795 45360795 G T ITGB3 Nonsense_Mutation p.E81* 0.26 TCGA-NC-A5HP-01 17 53111607 53111607 T C STXBP4 Missense_Mutation p.I281T 0.14 deleterious(0.04) benign(0.006) TCGA-NC-A5HP-01 17 59560262 59560262 C T TBX4 Silent p.D341D 0.31 TCGA-NC-A5HP-01 17 59962265 59962265 C A INTS2 Nonsense_Mutation p.G704* 0.33 TCGA-NC-A5HP-01 17 60493432 60493432 C G EFCAB3 Silent p.L405L 0.35 TCGA-NC-A5HP-01 17 60759275 60759275 G A MRC2 Missense_Mutation p.C927Y 0.30 deleterious(0) probably_damaging(1) TCGA-NC-A5HP-01 17 62022975 62022975 G A SCN4A Silent p.G1155G 0.04 TCGA-NC-A5HP-01 17 62050066 62050066 C T SCN4A Missense_Mutation p.E46K 0.32 tolerated(0.45) benign(0) TCGA-NC-A5HP-01 17 62568014 62568014 A G SMURF2 Silent p.R306R 0.11 TCGA-NC-A5HP-01 17 72999915 72999915 C A CDR2L Silent p.R382R 0.33 TCGA-NC-A5HP-01 17 75483573 75483573 G T SEPT9 Silent p.S327S 0.28 TCGA-NC-A5HP-01 17 7577548 7577548 C G TP53 Missense_Mutation p.G245R 0.39 deleterious(0) probably_damaging(1) TCGA-NC-A5HP-01 17 77078271 77078271 G T ENGASE Intron 0.32 TCGA-NC-A5HP-01 17 78323693 78323693 C G RNF213 Missense_Mutation p.L3359V 0.31 probably_damaging(0.997) TCGA-NC-A5HP-01 17 80156215 80156215 T A CCDC57 Missense_Mutation p.D164V 0.36 deleterious(0) probably_damaging(0.931) TCGA-NC-A5HP-01 18 29340557 29340557 G C SLC25A52 Missense_Mutation p.P33R 0.55 deleterious(0.01) benign(0.345) TCGA-NC-A5HP-01 18 29787372 29787372 C G MEP1B Missense_Mutation p.I235M 0.58 deleterious(0) probably_damaging(1) TCGA-NC-A5HP-01 18 5406927 5406927 G C EPB41L3 Missense_Mutation p.T733S 0.47 tolerated(0.09) probably_damaging(0.985) TCGA-NC-A5HP-01 18 61652459 61652459 G C SERPINB8 Missense_Mutation p.D234H 0.34 deleterious(0.03) possibly_damaging(0.486) TCGA-NC-A5HP-01 18 76754281 76754281 G C SALL3 Missense_Mutation p.G764R 0.44 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HP-01 19 10129448 10129448 C A RDH8 Missense_Mutation p.L122I 0.19 tolerated(0.45) benign(0.012) TCGA-NC-A5HP-01 19 11660228 11660228 C G CNN1 Missense_Mutation p.P198A 0.27 deleterious(0.01) possibly_damaging(0.698) TCGA-NC-A5HP-01 19 12061192 12061192 G C ZNF700 3'UTR 0.45 TCGA-NC-A5HP-01 19 12075878 12075878 C T ZNF763 5'UTR 0.50 TCGA-NC-A5HP-01 19 13260595 13260595 C T STX10 Missense_Mutation p.R51Q 0.14 deleterious(0) possibly_damaging(0.861) TCGA-NC-A5HP-01 19 1483304 1483304 C T PCSK4 Missense_Mutation p.R517H 0.43 deleterious(0.03) benign(0.031) TCGA-NC-A5HP-01 19 15133711 15133711 C A CCDC105 Missense_Mutation p.T427K 0.25 tolerated(0.88) benign(0.157) TCGA-NC-A5HP-01 19 17691531 17691531 A C COLGALT1 Missense_Mutation p.Q473P 0.23 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HP-01 19 19790104 19790104 C T ZNF101 Silent p.C102C 0.38 TCGA-NC-A5HP-01 19 22272044 22272044 C A ZNF257 Silent p.R498R 0.42 TCGA-NC-A5HP-01 19 22785190 22785190 G T AC011467.1 5'Flank 0.50 TCGA-NC-A5HP-01 19 22940328 22940328 C A ZNF99 Missense_Mutation p.G795C 0.12 deleterious(0.01) probably_damaging(0.98) TCGA-NC-A5HP-01 19 24310456 24310456 G T ZNF254 Missense_Mutation p.G552C 0.19 deleterious(0.01) probably_damaging(0.993) TCGA-NC-A5HP-01 19 35449158 35449158 T A ZNF792 Missense_Mutation p.Y534F 0.49 tolerated(0.05) benign(0.016) TCGA-NC-A5HP-01 19 36332699 36332699 G T NPHS1 Silent p.A911A 0.40 TCGA-NC-A5HP-01 19 38949961 38949961 C A RYR1 Missense_Mutation p.S781R 0.43 probably_damaging(0.983) TCGA-NC-A5HP-01 19 4217037 4217037 C A ANKRD24 Missense_Mutation p.A627D 0.21 deleterious_low_confidence(0) benign(0.004) TCGA-NC-A5HP-01 19 42351597 42351597 G A DMRTC2 Missense_Mutation p.R34K 0.51 tolerated(0.12) benign(0.005) TCGA-NC-A5HP-01 19 43420479 43420479 G C PSG6 Silent p.L75L 0.42 TCGA-NC-A5HP-01 19 4409489 4409489 C G CHAF1A Missense_Mutation p.I231M 0.30 deleterious_low_confidence(0) unknown(0) TCGA-NC-A5HP-01 19 4534032 4534032 G A PLIN5 Nonsense_Mutation p.Q19* 0.53 TCGA-NC-A5HP-01 19 47969480 47969480 C A SLC8A2 Missense_Mutation p.D61Y 0.55 deleterious(0.03) benign(0.359) TCGA-NC-A5HP-01 19 49261381 49261381 C A FGF21 Silent p.P178P 0.41 TCGA-NC-A5HP-01 19 49632180 49632180 G A PPFIA3 Missense_Mutation p.A140T 0.49 tolerated(0.07) benign(0.091) TCGA-NC-A5HP-01 19 52941379 52941379 C G ZNF534 Missense_Mutation p.I235M 0.56 deleterious(0.01) benign(0.137) TCGA-NC-A5HP-01 19 53994537 53994537 G T ZNF813 Nonsense_Mutation p.G351* 0.49 TCGA-NC-A5HP-01 19 53994538 53994538 G T ZNF813 Missense_Mutation p.G351V 0.49 deleterious(0.01) probably_damaging(0.998) TCGA-NC-A5HP-01 19 54783826 54783826 G T LILRB2 Missense_Mutation p.R59S 0.50 tolerated(0.31) possibly_damaging(0.77) TCGA-NC-A5HP-01 19 57326882 57326882 C A PEG3 Missense_Mutation p.E976D 0.54 deleterious(0.02) possibly_damaging(0.89) TCGA-NC-A5HP-01 19 9059584 9059584 G A MUC16 Missense_Mutation p.P9288S 0.38 unknown(0) TCGA-NC-A5HP-01 1 100606500 100606500 T C TRMT13 Silent p.H198H 0.47 TCGA-NC-A5HP-01 1 102270259 102270259 G T OLFM3 Silent p.A304A 0.47 TCGA-NC-A5HP-01 1 103488507 103488507 C T COL11A1 Missense_Mutation p.E346K 0.55 probably_damaging(0.97) TCGA-NC-A5HP-01 1 119456758 119456758 G A TBX15 Silent p.F196F 0.72 TCGA-NC-A5HP-01 1 120165676 120165676 C A ZNF697 Silent p.T430T 0.81 TCGA-NC-A5HP-01 1 120438306 120438306 A T ADAM30 Missense_Mutation p.F218L 0.61 tolerated(0.13) benign(0.042) TCGA-NC-A5HP-01 1 12476741 12476741 T C VPS13D Missense_Mutation p.L4065P 0.57 probably_damaging(0.997) TCGA-NC-A5HP-01 1 151339225 151339225 C A SELENBP1 Missense_Mutation p.G213C 0.09 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HP-01 1 152278793 152278793 G T FLG Missense_Mutation p.R2857S 0.21 benign(0.004) TCGA-NC-A5HP-01 1 155186764 155186764 G C MTX1 3'Flank 0.12 TCGA-NC-A5HP-01 1 156642451 156642451 G T NES Missense_Mutation p.A510D 0.63 deleterious(0.03) possibly_damaging(0.839) TCGA-NC-A5HP-01 1 156849015 156849015 C A NTRK1 Missense_Mutation p.A636E 0.74 deleterious(0) possibly_damaging(0.797) TCGA-NC-A5HP-01 1 158152723 158152723 G T CD1D Silent p.L221L 0.12 TCGA-NC-A5HP-01 1 158592860 158592860 G A SPTA1 Silent p.A2011A 0.05 TCGA-NC-A5HP-01 1 160063889 160063889 G A IGSF8 Missense_Mutation p.P172L 0.63 tolerated(0.35) benign(0.075) TCGA-NC-A5HP-01 1 160593896 160593896 C G SLAMF1 Missense_Mutation p.L260F 0.10 tolerated(0.2) benign(0.02) TCGA-NC-A5HP-01 1 165173222 165173222 C A LMX1A Silent p.L348L 0.69 TCGA-NC-A5HP-01 1 166845505 166845505 C G TADA1 5'UTR 0.18 TCGA-NC-A5HP-01 1 167906150 167906150 A T DCAF6 Translation_Start_Site p.M1? 1.00 deleterious_low_confidence(0) possibly_damaging(0.557) TCGA-NC-A5HP-01 1 170003545 170003545 C A KIFAP3 Missense_Mutation p.W237L 0.13 tolerated(0.14) probably_damaging(1) TCGA-NC-A5HP-01 1 182898858 182898858 A G SHCBP1L Missense_Mutation p.L369P 0.57 tolerated(0.15) possibly_damaging(0.831) TCGA-NC-A5HP-01 1 183914779 183914779 T G COLGALT2 Intron 0.65 TCGA-NC-A5HP-01 1 190129947 190129947 C T BRINP3 Nonsense_Mutation p.W345* 0.61 TCGA-NC-A5HP-01 1 196857283 196857283 G C CFHR4 Translation_Start_Site p.M1? 0.74 tolerated(0.06) benign(0) TCGA-NC-A5HP-01 1 196871656 196871656 G T CFHR4 Missense_Mutation p.C55F 0.10 deleterious(0) probably_damaging(1) TCGA-NC-A5HP-01 1 197111914 197111914 G T ASPM Missense_Mutation p.R490S 0.20 tolerated(0.06) possibly_damaging(0.759) TCGA-NC-A5HP-01 1 203153721 203153721 C T CHI3L1 Nonsense_Mutation p.W99* 0.17 TCGA-NC-A5HP-01 1 204438217 204438217 G C PIK3C2B Silent p.L238L 0.31 TCGA-NC-A5HP-01 1 207684970 207684970 T C CR1 Missense_Mutation p.I153T 0.09 tolerated(0.64) benign(0.068) TCGA-NC-A5HP-01 1 214825073 214825073 A G CENPF Silent p.T2668T 0.64 TCGA-NC-A5HP-01 1 228505693 228505693 G T OBSCN Missense_Mutation p.E5607D 0.11 benign(0.113) TCGA-NC-A5HP-01 1 231487255 231487255 C G SPRTN Nonsense_Mutation p.S219* 0.10 TCGA-NC-A5HP-01 1 235291192 235291192 G C TOMM20 Intron 0.05 TCGA-NC-A5HP-01 1 237951436 237951436 G C RYR2 Splice_Site p.X4492_splice 0.13 TCGA-NC-A5HP-01 1 238090150 238090150 C G RP11-193H5.1 RNA 0.31 TCGA-NC-A5HP-01 1 241261977 241261977 C A RGS7 Missense_Mutation p.S55I 0.14 deleterious(0) probably_damaging(0.988) TCGA-NC-A5HP-01 1 243349601 243349601 T C CEP170 Missense_Mutation p.Q411R 0.64 tolerated(0.49) benign(0.066) TCGA-NC-A5HP-01 1 245850866 245850866 T A KIF26B Missense_Mutation p.H1527Q 0.57 tolerated(0.12) unknown(0) TCGA-NC-A5HP-01 1 247875928 247875928 C A OR6F1 Missense_Mutation p.A44S 0.12 tolerated(0.27) benign(0.038) TCGA-NC-A5HP-01 1 248004885 248004885 A T OR11L1 Missense_Mutation p.V105E 0.63 tolerated(0.18) probably_damaging(0.929) TCGA-NC-A5HP-01 1 248059235 248059235 C A OR2W3 Missense_Mutation p.A116D 0.10 deleterious(0) probably_damaging(0.95) TCGA-NC-A5HP-01 1 248402473 248402473 G T OR2M4 Missense_Mutation p.M81I 0.64 deleterious(0.03) benign(0.081) TCGA-NC-A5HP-01 1 248813807 248813807 A T OR2T27 Missense_Mutation p.C127S 0.45 tolerated(0.08) probably_damaging(0.961) TCGA-NC-A5HP-01 1 25718565 25718565 C A RHCE Missense_Mutation p.W185L 0.54 tolerated(0.48) possibly_damaging(0.662) TCGA-NC-A5HP-01 1 40030096 40030096 G A PABPC4 Silent p.V484V 0.24 TCGA-NC-A5HP-01 1 46290124 46290124 G T MAST2 Missense_Mutation p.S66I 0.49 tolerated_low_confidence(0.05) probably_damaging(0.993) TCGA-NC-A5HP-01 1 63009346 63009346 C A DOCK7 Missense_Mutation p.G946V 0.52 tolerated(0.42) benign(0.01) TCGA-NC-A5HP-01 1 70573432 70573432 T C LRRC7 Intron 0.47 TCGA-NC-A5HP-01 1 78401672 78401674 AAG - NEXN In_Frame_Del p.R475del 0.57 TCGA-NC-A5HP-01 1 85724232 85724232 T C C1orf52 Silent p.P150P 0.44 TCGA-NC-A5HP-01 1 89523830 89523830 C T GBP1 Missense_Mutation p.R240Q 0.28 tolerated(0.19) benign(0.002) TCGA-NC-A5HP-01 20 1456736 1456736 G T SIRPB2 3'UTR 0.37 TCGA-NC-A5HP-01 20 17970854 17970854 T A MGME1 3'UTR 0.46 TCGA-NC-A5HP-01 20 21227158 21227158 G A PLK1S1 RNA 0.26 TCGA-NC-A5HP-01 20 21686952 21686952 G C PAX1 Intron 0.19 TCGA-NC-A5HP-01 20 21687270 21687270 C T PAX1 Silent p.L161L 0.24 TCGA-NC-A5HP-01 20 2297832 2297832 C A TGM3 Missense_Mutation p.S263Y 0.28 deleterious(0.01) probably_damaging(0.985) TCGA-NC-A5HP-01 20 42355160 42355160 G A GTSF1L Missense_Mutation p.H59Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HP-01 20 43052943 43052943 G T HNF4A Intron 0.32 TCGA-NC-A5HP-01 20 55028065 55028065 C A CASS4 Nonsense_Mutation p.Y611* 0.32 TCGA-NC-A5HP-01 21 11026783 11026783 C A BAGE2 RNA 0.15 TCGA-NC-A5HP-01 21 31914131 31914131 A G KRTAP19-6 Missense_Mutation p.Y8H 0.50 deleterious_low_confidence(0) unknown(0) TCGA-NC-A5HP-01 21 32127588 32127588 C T KRTAP21-1 Missense_Mutation p.G37R 0.52 tolerated_low_confidence(0.4) unknown(0) TCGA-NC-A5HP-01 21 38269164 38269164 C T HLCS Missense_Mutation p.D483N 0.57 deleterious(0) probably_damaging(0.938) TCGA-NC-A5HP-01 21 46191299 46191299 C - UBE2G2 Frame_Shift_Del p.G164Dfs*60 0.35 TCGA-NC-A5HP-01 22 16256439 16256439 C A POTEH 3'Flank 0.22 TCGA-NC-A5HP-01 22 16287775 16287775 C A POTEH Silent p.G37G 0.43 TCGA-NC-A5HP-01 22 17072035 17072035 C G CCT8L2 Missense_Mutation p.G469A 0.45 tolerated(0.64) benign(0.103) TCGA-NC-A5HP-01 22 20458643 20458643 C A RIMBP3 Missense_Mutation p.G887W 0.13 deleterious(0) probably_damaging(1) TCGA-NC-A5HP-01 22 21976013 21976013 C G UBE2L3 3'UTR 0.21 TCGA-NC-A5HP-01 22 37602442 37602442 C T SSTR3 3'UTR 0.67 TCGA-NC-A5HP-01 22 46688701 46688701 G A TTC38 Missense_Mutation p.E444K 0.24 deleterious(0) probably_damaging(0.967) TCGA-NC-A5HP-01 22 50728145 50728145 C A PLXNB2 Missense_Mutation p.G290V 0.42 deleterious(0.02) benign(0.243) TCGA-NC-A5HP-01 22 50728669 50728669 G C PLXNB2 Silent p.L115L 0.31 TCGA-NC-A5HP-01 2 101188070 101188070 G A PDCL3 Silent p.L129L 0.28 TCGA-NC-A5HP-01 2 113344009 113344009 A G CHCHD5 Intron 0.28 TCGA-NC-A5HP-01 2 128757636 128757636 T A SAP130 Missense_Mutation p.T394S 0.23 tolerated_low_confidence(0.1) benign(0.396) TCGA-NC-A5HP-01 2 130681140 130681140 G A AC079776.3 Intron 0.25 TCGA-NC-A5HP-01 2 133540383 133540383 C A NCKAP5 Missense_Mutation p.S1334I 0.32 deleterious(0.02) possibly_damaging(0.735) TCGA-NC-A5HP-01 2 137814249 137814249 G T THSD7B Silent p.T133T 0.19 TCGA-NC-A5HP-01 2 155115556 155115556 C T GALNT13 Silent p.L294L 0.29 TCGA-NC-A5HP-01 2 162751269 162751269 T C SLC4A10 Silent p.T425T 0.42 TCGA-NC-A5HP-01 2 170843267 170843267 A G UBR3 Silent p.R1249R 0.36 TCGA-NC-A5HP-01 2 175311341 175311341 C T GPR155 Missense_Mutation p.A671T 0.10 tolerated(0.06) probably_damaging(0.972) TCGA-NC-A5HP-01 2 179440905 179440905 G T TTN Silent p.A23318A 0.24 TCGA-NC-A5HP-01 2 179440906 179440906 G T TTN Missense_Mutation p.A23318D 0.24 TCGA-NC-A5HP-01 2 179640473 179640473 G T TTN Missense_Mutation p.H2040N 0.21 TCGA-NC-A5HP-01 2 179736961 179736961 G A CCDC141 Missense_Mutation p.R660W 0.25 deleterious(0.02) benign(0.073) TCGA-NC-A5HP-01 2 185800768 185800768 T C ZNF804A Silent p.S215S 0.29 TCGA-NC-A5HP-01 2 189933595 189933595 T C COL5A2 Missense_Mutation p.T392A 0.25 probably_damaging(0.952) TCGA-NC-A5HP-01 2 191937916 191937916 C A STAT4 Missense_Mutation p.G125W 0.30 deleterious(0.01) probably_damaging(0.986) TCGA-NC-A5HP-01 2 192700540 192700540 G C SDPR 3'UTR 0.50 TCGA-NC-A5HP-01 2 196651841 196651841 C T DNAH7 Missense_Mutation p.E3591K 0.44 deleterious(0.01) probably_damaging(1) TCGA-NC-A5HP-01 2 201994721 201994721 C T CFLAR Missense_Mutation p.R45W 0.10 deleterious(0.02) possibly_damaging(0.849) TCGA-NC-A5HP-01 2 202606527 202606527 G A ALS2 Nonsense_Mutation p.R741* 0.32 TCGA-NC-A5HP-01 2 203831816 203831824 AGCTCGGTA - CARF Splice_Site p.X318_splice 0.25 TCGA-NC-A5HP-01 2 210561031 210561031 C T MAP2 Silent p.D1379D 0.34 TCGA-NC-A5HP-01 2 21247996 21247996 C A APOB Missense_Mutation p.D749Y 0.22 probably_damaging(1) TCGA-NC-A5HP-01 2 219892264 219892264 C A CCDC108 Intron 0.25 TCGA-NC-A5HP-01 2 228398333 228398333 G A AGFG1 Missense_Mutation p.D319N 0.43 tolerated(0.16) benign(0.033) TCGA-NC-A5HP-01 2 228881746 228881746 T A SPHKAP Missense_Mutation p.Q1275L 0.30 tolerated(0.19) possibly_damaging(0.821) TCGA-NC-A5HP-01 2 234238198 234238198 G T SAG Missense_Mutation p.K236N 0.32 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HP-01 2 26696333 26696333 G T OTOF Missense_Mutation p.L1171M 0.43 deleterious(0.01) possibly_damaging(0.517) TCGA-NC-A5HP-01 2 27600906 27600906 G C ZNF513 Missense_Mutation p.H378D 0.09 deleterious(0) possibly_damaging(0.537) TCGA-NC-A5HP-01 2 33335648 33335648 G T LTBP1 Splice_Site p.X288_splice 0.42 TCGA-NC-A5HP-01 2 33952579 33952579 G T AC009499.1 Intron 0.29 TCGA-NC-A5HP-01 2 37873386 37873386 G C CDC42EP3 Silent p.S115S 0.32 TCGA-NC-A5HP-01 2 39499491 39499491 C T MAP4K3 Missense_Mutation p.A636T 0.39 tolerated(0.15) probably_damaging(0.979) TCGA-NC-A5HP-01 2 43934559 43934559 G T PLEKHH2 Missense_Mutation p.S614I 0.18 deleterious(0) benign(0.181) TCGA-NC-A5HP-01 2 47357134 47357134 C G C2orf61 Missense_Mutation p.R155S 0.19 deleterious(0.01) possibly_damaging(0.713) TCGA-NC-A5HP-01 2 48018211 48018211 G A MSH6 Missense_Mutation p.D136N 0.18 tolerated(0.21) probably_damaging(0.998) TCGA-NC-A5HP-01 2 49190874 49190874 G A FSHR Silent p.Y362Y 0.28 TCGA-NC-A5HP-01 2 56094230 56094230 A G EFEMP1 Missense_Mutation p.I487T 0.56 deleterious(0.02) possibly_damaging(0.816) TCGA-NC-A5HP-01 2 73303124 73303124 C A RAB11FIP5 Silent p.L585L 0.35 TCGA-NC-A5HP-01 2 73303276 73303276 C A RAB11FIP5 Missense_Mutation p.V535L 0.39 tolerated(0.39) benign(0.001) TCGA-NC-A5HP-01 2 74867440 74867440 G C M1AP 5'UTR 0.38 TCGA-NC-A5HP-01 2 79363180 79363180 C A REG1P RNA 0.32 TCGA-NC-A5HP-01 2 97911302 97911302 G C ANKRD36 Missense_Mutation p.D1660H 0.26 deleterious(0.01) probably_damaging(0.923) TCGA-NC-A5HP-01 3 11075333 11075333 C A SLC6A1 Silent p.R479R 0.33 TCGA-NC-A5HP-01 3 111325662 111325662 C T CD96 Intron 0.42 TCGA-NC-A5HP-01 3 113152509 113152509 C T WDR52 Translation_Start_Site p.M1? 0.22 deleterious_low_confidence(0) possibly_damaging(0.584) TCGA-NC-A5HP-01 3 113330966 113330966 A T SIDT1 Missense_Mutation p.I631F 0.29 tolerated(0.08) benign(0.013) TCGA-NC-A5HP-01 3 11643367 11643367 T A VGLL4 Missense_Mutation p.E71V 0.35 deleterious(0.04) benign(0.398) TCGA-NC-A5HP-01 3 119501609 119501609 C G NR1I2 Missense_Mutation p.T2R 0.23 deleterious_low_confidence(0) possibly_damaging(0.507) TCGA-NC-A5HP-01 3 130327805 130327805 T A COL6A6 Silent p.P1583P 0.31 TCGA-NC-A5HP-01 3 134214184 134214184 A C CEP63 Missense_Mutation p.I8L 0.52 tolerated(0.15) benign(0.007) TCGA-NC-A5HP-01 3 142430843 142430843 A G PLS1 Missense_Mutation p.I628M 0.17 deleterious_low_confidence(0) benign(0.058) TCGA-NC-A5HP-01 3 148545640 148545640 G A CPB1 Silent p.V10V 0.65 TCGA-NC-A5HP-01 3 150931954 150931954 G T P2RY14 Missense_Mutation p.P51T 0.15 deleterious(0.01) possibly_damaging(0.825) TCGA-NC-A5HP-01 3 151012404 151012404 C T GPR87 Silent p.V210V 0.28 TCGA-NC-A5HP-01 3 155198948 155198948 T A PLCH1 Missense_Mutation p.T1631S 0.12 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-NC-A5HP-01 3 160239649 160239649 T C KPNA4 Missense_Mutation p.N274S 0.15 deleterious(0.02) benign(0.327) TCGA-NC-A5HP-01 3 170011278 170011278 G T PRKCI Nonsense_Mutation p.E467* 0.10 TCGA-NC-A5HP-01 3 170824971 170824971 C A TNIK Splice_Site p.X802_splice 0.12 TCGA-NC-A5HP-01 3 184008096 184008096 C T ECE2 Silent p.F653F 0.71 TCGA-NC-A5HP-01 3 184100783 184100783 C T CHRD Intron 0.21 TCGA-NC-A5HP-01 3 184290947 184290947 A T EPHB3 Missense_Mutation p.K280M 0.68 tolerated(0.06) probably_damaging(0.926) TCGA-NC-A5HP-01 3 186395713 186395713 A C HRG 3'UTR 0.70 TCGA-NC-A5HP-01 3 39159665 39159665 G T TTC21A Missense_Mutation p.Q274H 0.42 tolerated(0.06) benign(0) TCGA-NC-A5HP-01 3 49049433 49049433 G T WDR6 Missense_Mutation p.D186Y 0.33 deleterious(0) probably_damaging(0.969) TCGA-NC-A5HP-01 3 49412884 49412884 C T RHOA Missense_Mutation p.E47K 0.43 deleterious(0.04) possibly_damaging(0.846) TCGA-NC-A5HP-01 3 56627688 56627688 G A CCDC66 Missense_Mutation p.G413E 0.50 tolerated(1) possibly_damaging(0.668) TCGA-NC-A5HP-01 3 58555543 58555543 C G FAM107A Silent p.L15L 0.53 TCGA-NC-A5HP-01 3 58923473 58923473 C A C3orf67 5'UTR 0.68 TCGA-NC-A5HP-01 3 74411080 74411080 G A CNTN3 Missense_Mutation p.S442F 0.15 tolerated(0.2) benign(0.015) TCGA-NC-A5HP-01 3 87027927 87027927 A G VGLL3 Missense_Mutation p.M51T 0.56 deleterious(0) probably_damaging(0.989) TCGA-NC-A5HP-01 3 89156789 89156789 A T EPHA3 5'UTR 0.55 TCGA-NC-A5HP-01 4 126239394 126239394 G T FAT4 Missense_Mutation p.G610W 0.51 probably_damaging(0.957) TCGA-NC-A5HP-01 4 126370486 126370486 G T FAT4 Missense_Mutation p.R2772M 0.51 probably_damaging(0.91) TCGA-NC-A5HP-01 4 126373905 126373905 G T FAT4 Missense_Mutation p.G3912C 0.55 probably_damaging(0.984) TCGA-NC-A5HP-01 4 139153490 139153490 G C SLC7A11 Missense_Mutation p.L151V 0.57 tolerated(0.73) possibly_damaging(0.877) TCGA-NC-A5HP-01 4 167021955 167021955 C A TLL1 Missense_Mutation p.T990K 0.68 deleterious(0) probably_damaging(0.969) TCGA-NC-A5HP-01 4 184240707 184240707 G C CLDN22 3'UTR 0.44 TCGA-NC-A5HP-01 4 187455328 187455328 C G MTNR1A Missense_Mutation p.A190P 0.48 deleterious(0.01) benign(0.336) TCGA-NC-A5HP-01 4 187522537 187522537 G C FAT1 Nonsense_Mutation p.Y3842* 0.29 TCGA-NC-A5HP-01 5 102611656 102611656 C G C5orf30 Silent p.T12T 0.50 TCGA-NC-A5HP-01 5 10988224 10988224 T A CTNND2 Silent p.T1114T 0.35 TCGA-NC-A5HP-01 5 113829154 113829154 G A KCNN2 Silent p.L479L 0.55 TCGA-NC-A5HP-01 5 127607802 127607802 C T FBN2 Missense_Mutation p.E2617K 0.51 deleterious(0) possibly_damaging(0.574) TCGA-NC-A5HP-01 5 139060886 139060886 C A CXXC5 Silent p.R260R 0.50 TCGA-NC-A5HP-01 5 140262906 140262906 C T PCDHA13 Silent p.T351T 0.52 TCGA-NC-A5HP-01 5 140579816 140579816 G A PCDHB11 Missense_Mutation p.A157T 0.49 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-NC-A5HP-01 5 140907152 140907152 A G DIAPH1 Silent p.V1087V 0.33 TCGA-NC-A5HP-01 5 143549515 143549515 G A YIPF5 Missense_Mutation p.S2L 0.64 deleterious_low_confidence(0) benign(0.116) TCGA-NC-A5HP-01 5 148417885 148417885 T A SH3TC2 Missense_Mutation p.N325I 0.60 tolerated(0.08) benign(0.001) TCGA-NC-A5HP-01 5 150696612 150696612 G A SLC36A2 Silent p.V406V 0.50 TCGA-NC-A5HP-01 5 156590560 156590560 T A FAM71B Missense_Mutation p.H239L 0.42 tolerated(0.51) benign(0) TCGA-NC-A5HP-01 5 168690690 168690690 G T SLIT3 Intron 0.42 TCGA-NC-A5HP-01 5 1881973 1881973 G A IRX4 Silent p.G82G 0.30 TCGA-NC-A5HP-01 5 21975365 21975365 C G CDH12 Missense_Mutation p.E121Q 0.34 tolerated(0.2) possibly_damaging(0.585) TCGA-NC-A5HP-01 5 24535367 24535367 G T CDH10 Missense_Mutation p.P223Q 0.18 deleterious(0.02) possibly_damaging(0.543) TCGA-NC-A5HP-01 5 24535918 24535918 C A CDH10 Silent p.V180V 0.21 TCGA-NC-A5HP-01 5 26881303 26881303 C A CDH9 Missense_Mutation p.G771V 0.38 deleterious(0) probably_damaging(1) TCGA-NC-A5HP-01 5 26885843 26885843 C A CDH9 Missense_Mutation p.V588L 0.44 deleterious(0.01) probably_damaging(0.992) TCGA-NC-A5HP-01 5 36037991 36037991 T A UGT3A2 Silent p.V401V 0.33 TCGA-NC-A5HP-01 5 45262060 45262060 G C HCN1 Missense_Mutation p.P879R 0.29 tolerated_low_confidence(0.45) benign(0.037) TCGA-NC-A5HP-01 5 67590468 67590468 A G PIK3R1 Silent p.E510E 0.50 TCGA-NC-A5HP-01 5 74130328 74130328 C A FAM169A Missense_Mutation p.C138F 0.51 deleterious(0) probably_damaging(1) TCGA-NC-A5HP-01 5 9042958 9042958 A G SEMA5A 3'UTR 0.27 TCGA-NC-A5HP-01 6 12130041 12130041 A T HIVEP1 Missense_Mutation p.D2042V 0.20 tolerated(0.23) benign(0.044) TCGA-NC-A5HP-01 6 131924255 131924255 G A MED23 Nonsense_Mutation p.Q616* 0.36 TCGA-NC-A5HP-01 6 132859706 132859706 C A TAAR9 Missense_Mutation p.S93Y 0.31 deleterious(0) probably_damaging(0.914) TCGA-NC-A5HP-01 6 133072530 133072530 A T VNN2 Silent p.V318V 0.26 TCGA-NC-A5HP-01 6 134210800 134210800 C T TCF21 Missense_Mutation p.R89W 0.27 deleterious(0) probably_damaging(1) TCGA-NC-A5HP-01 6 144803406 144803406 A G UTRN Missense_Mutation p.K1190R 0.29 deleterious(0.05) benign(0.347) TCGA-NC-A5HP-01 6 152510479 152510479 T A SYNE1 Missense_Mutation p.T7737S 0.33 benign(0.004) TCGA-NC-A5HP-01 6 153077338 153077338 C G VIP Silent p.T135T 0.33 TCGA-NC-A5HP-01 6 158535940 158535940 T C SERAC1 Missense_Mutation p.N522S 0.34 tolerated(0.19) benign(0.011) TCGA-NC-A5HP-01 6 159650933 159650933 G T FNDC1 Missense_Mutation p.D423Y 0.35 deleterious(0) unknown(0) TCGA-NC-A5HP-01 6 17800282 17800282 C A KIF13A Silent p.V839V 0.38 TCGA-NC-A5HP-01 6 17837216 17837216 T C KIF13A Missense_Mutation p.K350E 0.19 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HP-01 6 24146226 24146226 G C NRSN1 3'UTR 0.16 TCGA-NC-A5HP-01 6 24873931 24873931 G - FAM65B Frame_Shift_Del p.E68Sfs*14 0.16 TCGA-NC-A5HP-01 6 27858550 27858550 T A HIST1H3J Silent p.T7T 0.22 TCGA-NC-A5HP-01 6 29323027 29323027 C T OR5V1 Missense_Mutation p.D316N 0.32 tolerated_low_confidence(0.3) benign(0.135) TCGA-NC-A5HP-01 6 29364794 29364794 C T OR12D2 Silent p.G106G 0.25 TCGA-NC-A5HP-01 6 32036354 32036354 C A TNXB Missense_Mutation p.E2011D 0.45 benign(0.297) TCGA-NC-A5HP-01 6 348263 348263 G T DUSP22 Nonsense_Mutation p.E142* 0.14 TCGA-NC-A5HP-01 6 348264 348264 A T DUSP22 Missense_Mutation p.E142V 0.15 tolerated(0.3) benign(0.058) TCGA-NC-A5HP-01 6 34949761 34949761 C T ANKS1A Nonsense_Mutation p.Q244* 0.26 TCGA-NC-A5HP-01 6 46620150 46620150 C G CYP39A1 Missense_Mutation p.R57T 0.32 deleterious(0.02) possibly_damaging(0.718) TCGA-NC-A5HP-01 6 47221222 47221222 C A TNFRSF21 Nonsense_Mutation p.G427* 0.27 TCGA-NC-A5HP-01 6 49976888 49976888 C A DEFB110 Missense_Mutation p.G51V 0.27 deleterious_low_confidence(0.03) probably_damaging(0.995) TCGA-NC-A5HP-01 6 49976889 49976889 C A DEFB110 Nonsense_Mutation p.G51* 0.27 TCGA-NC-A5HP-01 6 51637587 51637587 C A PKHD1 Missense_Mutation p.G2852V 0.16 deleterious(0) probably_damaging(1) TCGA-NC-A5HP-01 6 51798986 51798986 C A PKHD1 Missense_Mutation p.G2015W 0.34 deleterious(0) probably_damaging(1) TCGA-NC-A5HP-01 6 53986384 53986384 C A MLIP Missense_Mutation p.P68Q 0.37 tolerated(0.85) probably_damaging(0.931) TCGA-NC-A5HP-01 6 55939059 55939059 G A COL21A1 Missense_Mutation p.P646S 0.36 tolerated(0.17) benign(0.024) TCGA-NC-A5HP-01 6 70034806 70034806 C A BAI3 Missense_Mutation p.L953M 0.41 deleterious(0.03) probably_damaging(0.999) TCGA-NC-A5HP-01 6 83828618 83828618 G A DOPEY1 Silent p.P264P 0.31 TCGA-NC-A5HP-01 6 88299660 88299660 G A RARS2 Missense_Mutation p.R6C 0.32 deleterious(0) possibly_damaging(0.79) TCGA-NC-A5HP-01 6 90348447 90348447 G T LYRM2 5'UTR 0.37 TCGA-NC-A5HP-01 6 97246437 97246437 T G GPR63 Missense_Mutation p.K391Q 0.05 tolerated(0.31) benign(0.08) TCGA-NC-A5HP-01 6 97580573 97580573 T C KLHL32 Silent p.L551L 0.33 TCGA-NC-A5HP-01 7 120428563 120428563 T A TSPAN12 3'UTR 0.66 TCGA-NC-A5HP-01 7 127894617 127894617 A G LEP Missense_Mutation p.E102G 0.62 tolerated(0.05) probably_damaging(0.917) TCGA-NC-A5HP-01 7 135418885 135418885 T A FAM180A Missense_Mutation p.K120N 0.62 deleterious(0.04) possibly_damaging(0.897) TCGA-NC-A5HP-01 7 14188817 14188817 G A DGKB Missense_Mutation p.P785L 0.13 deleterious(0) possibly_damaging(0.558) TCGA-NC-A5HP-01 7 142625327 142625327 C A TRPV5 Missense_Mutation p.M255I 0.59 tolerated(0.11) benign(0.035) TCGA-NC-A5HP-01 7 143826811 143826811 C A OR2A14 Nonsense_Mutation p.C202* 0.62 TCGA-NC-A5HP-01 7 150553894 150553894 C A AOC1 Silent p.T112T 0.67 TCGA-NC-A5HP-01 7 26224378 26224378 C A NFE2L3 Missense_Mutation p.Q354K 0.52 tolerated(0.12) benign(0.069) TCGA-NC-A5HP-01 7 27140845 27140845 C T HOXA2 Missense_Mutation p.E211K 0.22 deleterious(0.01) benign(0.011) TCGA-NC-A5HP-01 7 31683468 31683468 C A CCDC129 Silent p.V854V 0.51 TCGA-NC-A5HP-01 7 40314111 40314111 G T SUGCT Splice_Site p.X200_splice 0.19 TCGA-NC-A5HP-01 7 4171963 4171963 G T SDK1 Missense_Mutation p.G1379V 0.31 deleterious(0) probably_damaging(1) TCGA-NC-A5HP-01 7 41729893 41729893 G T INHBA Missense_Mutation p.D212E 0.30 tolerated(0.21) possibly_damaging(0.607) TCGA-NC-A5HP-01 7 6370456 6370456 T C FAM220A Silent p.P110P 0.55 TCGA-NC-A5HP-01 7 72400603 72400603 G T POM121 Missense_Mutation p.R145L 0.39 deleterious(0) possibly_damaging(0.756) TCGA-NC-A5HP-01 8 10383136 10383136 C A PRSS55 Missense_Mutation p.T14K 0.50 tolerated(0.86) benign(0.003) TCGA-NC-A5HP-01 8 10470844 10470845 GG TTT RP1L1 Frame_Shift_Ins p.P255Kfs*27 0.46 TCGA-NC-A5HP-01 8 124663986 124663986 C A KLHL38 Missense_Mutation p.G394V 0.45 tolerated(0.07) benign(0.37) TCGA-NC-A5HP-01 8 133053846 133053846 G T OC90 Nonsense_Mutation p.C90* 0.69 TCGA-NC-A5HP-01 8 139165253 139165253 G C FAM135B Missense_Mutation p.Q489E 0.73 tolerated(1) benign(0.013) TCGA-NC-A5HP-01 8 139190881 139190881 C T FAM135B Nonsense_Mutation p.W309* 0.50 TCGA-NC-A5HP-01 8 139255258 139255258 C A FAM135B Missense_Mutation p.G199V 0.71 tolerated(0.14) possibly_damaging(0.813) TCGA-NC-A5HP-01 8 139890291 139890291 C A COL22A1 Silent p.A120A 0.62 TCGA-NC-A5HP-01 8 144942195 144942195 G C EPPK1 Missense_Mutation p.L1743V 0.45 probably_damaging(0.912) TCGA-NC-A5HP-01 8 15480730 15480730 C T TUSC3 Nonsense_Mutation p.Q94* 0.59 TCGA-NC-A5HP-01 8 26623556 26623556 G T ADRA1A Intron 0.48 TCGA-NC-A5HP-01 8 37732714 37732714 C A RAB11FIP1 Missense_Mutation p.R314L 0.55 deleterious(0.02) possibly_damaging(0.864) TCGA-NC-A5HP-01 8 62371064 62371064 A C CLVS1 Missense_Mutation p.N314H 0.39 tolerated_low_confidence(0.15) benign(0.17) TCGA-NC-A5HP-01 8 67578253 67578253 C A VCPIP1 Missense_Mutation p.S314I 0.48 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HP-01 8 77761804 77761804 G T ZFHX4 Missense_Mutation p.M1234I 0.25 benign(0.043) TCGA-NC-A5HP-01 8 86574471 86574471 G T REXO1L1P Missense_Mutation p.T419N 0.35 deleterious(0.05) benign(0.082) TCGA-NC-A5HP-01 8 88886011 88886011 G T DCAF4L2 Missense_Mutation p.S63R 0.61 deleterious(0.03) possibly_damaging(0.452) TCGA-NC-A5HP-01 9 100850229 100850229 G C TRIM14 Silent p.A284A 0.25 TCGA-NC-A5HP-01 9 104449158 104449158 T C GRIN3A Missense_Mutation p.T342A 0.32 tolerated(1) benign(0.001) TCGA-NC-A5HP-01 9 105767731 105767731 A G CYLC2 Missense_Mutation p.D273G 0.42 tolerated(0.13) unknown(0) TCGA-NC-A5HP-01 9 113734427 113734427 C T LPAR1 5'UTR 0.25 TCGA-NC-A5HP-01 9 121930502 121930502 C T BRINP1 Silent p.R382R 0.36 TCGA-NC-A5HP-01 9 125377627 125377627 C T OR1Q1 Missense_Mutation p.A204V 0.15 tolerated(0.59) benign(0.001) TCGA-NC-A5HP-01 9 125627780 125627780 G A RC3H2 Silent p.N494N 0.26 TCGA-NC-A5HP-01 9 130494457 130494457 G A TOR2A Silent p.N274N 0.21 TCGA-NC-A5HP-01 9 131046905 131046905 A G SWI5 Silent p.V181V 0.38 TCGA-NC-A5HP-01 9 131553936 131553936 G T TBC1D13 Missense_Mutation p.M88I 0.16 tolerated(0.43) benign(0.002) TCGA-NC-A5HP-01 9 134348999 134348999 A T PRRC2B Missense_Mutation p.I738F 0.57 tolerated(0.08) benign(0.082) TCGA-NC-A5HP-01 9 21971111 21971111 G A CDKN2A Missense_Mutation p.H83Y 0.47 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HP-01 9 34257793 34257793 C T KIF24 Silent p.T604T 0.16 TCGA-NC-A5HP-01 9 34506802 34506802 A G DNAI1 Missense_Mutation p.K414R 0.10 tolerated(0.47) benign(0.007) TCGA-NC-A5HP-01 9 35870334 35870334 G T OR13J1 Missense_Mutation p.A22D 0.05 tolerated(0.1) benign(0.221) TCGA-NC-A5HP-01 9 5339772 5339772 C T RLN1 5'UTR 0.44 TCGA-NC-A5HP-01 9 5969315 5969315 C G KIAA2026 Missense_Mutation p.A306P 0.46 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HP-01 9 72785645 72785645 T C MAMDC2 Intron 0.44 TCGA-NC-A5HP-01 9 79323232 79323232 C A PRUNE2 Missense_Mutation p.G1320C 0.24 tolerated(0.08) possibly_damaging(0.605) TCGA-NC-A5HP-01 9 95179780 95179780 G A OMD Nonsense_Mutation p.Q21* 0.17 TCGA-NC-A5HP-01 X 102004893 102004893 G A BHLHB9 Missense_Mutation p.E324K 0.18 deleterious(0) probably_damaging(0.959) TCGA-NC-A5HP-01 X 105153511 105153511 A C NRK Silent p.T627T 0.76 TCGA-NC-A5HP-01 X 110490716 110490716 C A CAPN6 Missense_Mutation p.L541F 0.60 deleterious(0.02) benign(0) TCGA-NC-A5HP-01 X 111874819 111874819 C A LHFPL1 Silent p.R164R 0.71 TCGA-NC-A5HP-01 X 118221881 118221881 T C KIAA1210 Silent p.P1104P 0.68 TCGA-NC-A5HP-01 X 125298529 125298529 C A DCAF12L2 Missense_Mutation p.G460V 0.63 deleterious(0) probably_damaging(1) TCGA-NC-A5HP-01 X 136652251 136652251 A G ZIC3 3'UTR 0.19 TCGA-NC-A5HP-01 X 140984632 140984632 C A MAGEC3 Intron 0.65 TCGA-NC-A5HP-01 X 149671757 149671757 G T MAMLD1 Intron 0.89 TCGA-NC-A5HP-01 X 153593520 153593520 G C FLNA Missense_Mutation p.Q559E 0.07 tolerated(0.33) benign(0.127) TCGA-NC-A5HP-01 X 34149752 34149752 G T FAM47A Missense_Mutation p.P215H 0.60 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HP-01 X 35821006 35821006 G A MAGEB16 Silent p.L231L 0.38 TCGA-NC-A5HP-01 X 35974181 35974181 G T CXorf22 Missense_Mutation p.M426I 0.71 tolerated(0.16) benign(0.006) TCGA-NC-A5HP-01 X 35974182 35974182 G T CXorf22 Missense_Mutation p.G427C 0.74 deleterious(0) probably_damaging(1) TCGA-NC-A5HP-01 X 36117962 36117962 G T CHDC2 Missense_Mutation p.R273L 0.75 deleterious(0) probably_damaging(0.919) TCGA-NC-A5HP-01 X 57935876 57935876 G - ZXDA Frame_Shift_Del p.L327Cfs*25 0.39 TCGA-NC-A5HP-01 X 79277890 79277890 G T TBX22 Missense_Mutation p.G41V 0.67 tolerated(0.33) benign(0.001) TCGA-NC-A5HP-01 X 79932388 79932388 C A BRWD3 Missense_Mutation p.G1710V 0.67 tolerated_low_confidence(0.15) unknown(0) TCGA-NC-A5HP-01 X 86869490 86869490 T C KLHL4 Missense_Mutation p.V215A 0.46 deleterious(0) possibly_damaging(0.72) TCGA-NC-A5HP-01 X 90691537 90691537 G T PABPC5 Nonsense_Mutation p.E321* 0.69 TCGA-NC-A5HP-01 X 9679756 9679756 T A TBL1X Silent p.P515P 0.51 TCGA-NC-A5HQ-01 10 118969313 118969313 C A KCNK18 Missense_Mutation p.R220S 0.17 tolerated(0.64) benign(0.001) TCGA-NC-A5HQ-01 10 125447472 125447472 C A GPR26 Silent p.P270P 0.51 TCGA-NC-A5HQ-01 10 128936123 128936123 C A FAM196A Missense_Mutation p.R473I 0.19 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HQ-01 10 18789794 18789794 C T CACNB2 Silent p.I170I 0.38 TCGA-NC-A5HQ-01 10 22880664 22880664 C A PIP4K2A Missense_Mutation p.R129L 0.37 deleterious(0.04) benign(0.168) TCGA-NC-A5HQ-01 10 26241096 26241096 T C MYO3A Silent p.D19D 0.34 TCGA-NC-A5HQ-01 10 26241141 26241141 A T MYO3A Missense_Mutation p.K34N 0.04 deleterious(0) probably_damaging(0.925) TCGA-NC-A5HQ-01 10 27306596 27306596 T C ANKRD26 Silent p.L1447L 0.13 TCGA-NC-A5HQ-01 10 27434644 27434644 T A YME1L1 Intron 0.46 TCGA-NC-A5HQ-01 10 62670699 62670699 C G RHOBTB1 Missense_Mutation p.R81T 0.17 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HQ-01 10 70451354 70451354 A T TET1 Missense_Mutation p.K2065M 0.24 deleterious(0) probably_damaging(0.935) TCGA-NC-A5HQ-01 10 70748776 70748776 C A KIAA1279 Missense_Mutation p.A63D 0.13 tolerated(0.63) benign(0.003) TCGA-NC-A5HQ-01 10 71160872 71160872 G T HK1 Missense_Mutation p.R916L 0.15 deleterious(0.01) benign(0.398) TCGA-NC-A5HQ-01 10 76790381 76790381 A T KAT6B Silent p.S1933S 0.43 TCGA-NC-A5HQ-01 10 84745231 84745231 G C NRG3 Missense_Mutation p.S654T 0.16 deleterious_low_confidence(0.02) benign(0.295) TCGA-NC-A5HQ-01 10 85936233 85936233 C T C10orf99 Intron 0.15 TCGA-NC-A5HQ-01 10 90699547 90699547 A C ACTA2 Intron 0.21 TCGA-NC-A5HQ-01 10 91144383 91144383 A G IFIT1B Missense_Mutation p.E438G 0.39 deleterious(0.01) possibly_damaging(0.855) TCGA-NC-A5HQ-01 11 103908661 103908661 A G DDI1 Missense_Mutation p.R371G 0.39 deleterious(0) benign(0.027) TCGA-NC-A5HQ-01 11 104817882 104817882 G C CASP4 Missense_Mutation p.I321M 0.18 deleterious(0.01) possibly_damaging(0.702) TCGA-NC-A5HQ-01 11 115085350 115085350 C A CADM1 Silent p.S324S 0.25 TCGA-NC-A5HQ-01 11 117100467 117100467 C A PCSK7 Missense_Mutation p.V32F 0.24 tolerated_low_confidence(0.18) benign(0.11) TCGA-NC-A5HQ-01 11 117100468 117100468 C A PCSK7 Silent p.L31L 0.24 TCGA-NC-A5HQ-01 11 117376299 117376299 G T DSCAML1 Silent p.T704T 0.41 TCGA-NC-A5HQ-01 11 118651830 118651830 C A DDX6 Silent p.S88S 0.22 TCGA-NC-A5HQ-01 11 122828114 122828114 A T C11orf63 Missense_Mutation p.K685M 0.40 deleterious(0) probably_damaging(0.979) TCGA-NC-A5HQ-01 11 123811213 123811213 C T OR4D5 Missense_Mutation p.A297V 0.22 deleterious(0) probably_damaging(0.985) TCGA-NC-A5HQ-01 11 124007286 124007286 A G VWA5A Silent p.A510A 0.06 TCGA-NC-A5HQ-01 11 124764217 124764217 C A ROBO4 Missense_Mutation p.V400F 0.41 tolerated(0.1) possibly_damaging(0.767) TCGA-NC-A5HQ-01 11 125465892 125465892 G T STT3A Missense_Mutation p.V28L 0.36 tolerated(0.48) benign(0.019) TCGA-NC-A5HQ-01 11 1263430 1263430 A G MUC5B Missense_Mutation p.N1774D 0.21 unknown(0) TCGA-NC-A5HQ-01 11 1271253 1271253 C A MUC5B Silent p.T4381T 0.21 TCGA-NC-A5HQ-01 11 129740125 129740125 G C NFRKB Missense_Mutation p.P957R 0.35 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-NC-A5HQ-01 11 1492597 1492597 G A MOB2 Nonsense_Mutation p.Q140* 0.19 TCGA-NC-A5HQ-01 11 26713985 26713985 C T SLC5A12 Intron 0.14 TCGA-NC-A5HQ-01 11 28113039 28113039 C A KIF18A Missense_Mutation p.D169Y 0.20 deleterious(0) probably_damaging(1) TCGA-NC-A5HQ-01 11 33565623 33565623 C G KIAA1549L Missense_Mutation p.N541K 0.17 tolerated_low_confidence(0.4) benign(0) TCGA-NC-A5HQ-01 11 49831413 49831413 A C RP11-707M1.1 RNA 0.18 TCGA-NC-A5HQ-01 11 55321805 55321805 C A OR4C15 Missense_Mutation p.A8E 0.21 deleterious_low_confidence(0) unknown(0) TCGA-NC-A5HQ-01 11 55607071 55607071 G C OR5D16 Missense_Mutation p.V282L 0.16 deleterious(0.03) benign(0.13) TCGA-NC-A5HQ-01 11 5701051 5701051 C T TRIM5 Silent p.R119R 0.25 TCGA-NC-A5HQ-01 11 5841688 5841688 C T OR52N2 Silent p.V41V 0.18 TCGA-NC-A5HQ-01 11 618971 618971 G T CDHR5 Missense_Mutation p.H530N 0.18 tolerated(0.52) benign(0.216) TCGA-NC-A5HQ-01 11 65266042 65266042 G A MALAT1 RNA 0.12 TCGA-NC-A5HQ-01 11 66108685 66108685 T A BRMS1 Missense_Mutation p.Q117L 0.45 deleterious(0.02) possibly_damaging(0.736) TCGA-NC-A5HQ-01 11 67375942 67375942 G A NDUFV1 Missense_Mutation p.D50N 0.21 deleterious_low_confidence(0) possibly_damaging(0.839) TCGA-NC-A5HQ-01 11 71238718 71238718 C T KRTAP5-7 Silent p.S124S 0.15 TCGA-NC-A5HQ-01 11 71724481 71724481 C A NUMA1 Silent p.L1356L 0.25 TCGA-NC-A5HQ-01 11 9055250 9055250 G A SCUBE2 Intron 0.25 TCGA-NC-A5HQ-01 11 9075230 9075230 C A SCUBE2 Missense_Mutation p.Q428H 0.30 tolerated(0.6) benign(0.007) TCGA-NC-A5HQ-01 12 102046892 102046892 G T MYBPC1 Splice_Site p.X520_splice 0.16 TCGA-NC-A5HQ-01 12 109719558 109719558 G A FOXN4 Silent p.R316R 0.46 TCGA-NC-A5HQ-01 12 11183530 11183530 C T TAS2R31 Silent p.G135G 0.11 TCGA-NC-A5HQ-01 12 11286001 11286001 C A TAS2R30 Missense_Mutation p.L281F 0.53 deleterious(0.03) benign(0.003) TCGA-NC-A5HQ-01 12 11286798 11286798 T C TAS2R30 Missense_Mutation p.I16V 0.43 tolerated(0.09) benign(0.068) TCGA-NC-A5HQ-01 12 112924296 112924296 G T PTPN11 Silent p.T414T 0.41 TCGA-NC-A5HQ-01 12 11545988 11545988 G T PRB2 Missense_Mutation p.P342T 0.12 tolerated(1) unknown(0) TCGA-NC-A5HQ-01 12 123286162 123286162 T C CCDC62 Missense_Mutation p.M490T 0.25 tolerated(0.61) benign(0.076) TCGA-NC-A5HQ-01 12 12397404 12397404 T C LRP6 Missense_Mutation p.N81D 0.51 tolerated(0.09) benign(0.108) TCGA-NC-A5HQ-01 12 133219405 133219405 C A POLE Splice_Site p.X1576_splice 0.35 TCGA-NC-A5HQ-01 12 20890120 20890120 G T SLCO1C1 Nonsense_Mutation p.E488* 0.55 TCGA-NC-A5HQ-01 12 32832306 32832306 G A DNM1L Silent p.A3A 0.59 TCGA-NC-A5HQ-01 12 32832307 32832307 C T DNM1L Silent p.L4L 0.56 TCGA-NC-A5HQ-01 12 40012629 40012629 C T ABCD2 Silent p.V263V 0.32 TCGA-NC-A5HQ-01 12 48388254 48388254 C A COL2A1 Missense_Mutation p.A257S 0.37 unknown(0) TCGA-NC-A5HQ-01 12 49431915 49431915 G A KMT2D Missense_Mutation p.S3075L 0.29 probably_damaging(0.978) TCGA-NC-A5HQ-01 12 49445337 49445338 - T KMT2D Frame_Shift_Ins p.P710Hfs*21 0.25 TCGA-NC-A5HQ-01 12 52758951 52758951 G T KRT85 Missense_Mutation p.R142S 0.16 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HQ-01 12 6669344 6669344 T C NOP2 Missense_Mutation p.Y603C 0.10 deleterious(0) probably_damaging(1) TCGA-NC-A5HQ-01 12 72032279 72032279 T C ZFC3H1 Silent p.Q548Q 0.12 TCGA-NC-A5HQ-01 12 72425476 72425476 T A TPH2 3'UTR 0.50 TCGA-NC-A5HQ-01 12 81733037 81733037 C A PPFIA2 Missense_Mutation p.A824S 0.35 tolerated(0.29) benign(0.087) TCGA-NC-A5HQ-01 12 99640371 99640371 T A ANKS1B Missense_Mutation p.K676N 0.36 deleterious(0.04) benign(0.045) TCGA-NC-A5HQ-01 13 103449152 103449152 A T KDELC1 Splice_Site p.X130_splice 0.16 TCGA-NC-A5HQ-01 13 22246235 22246235 A T FGF9 Missense_Mutation p.R62W 0.26 deleterious(0) probably_damaging(0.986) TCGA-NC-A5HQ-01 13 36049451 36049451 C A MAB21L1 Missense_Mutation p.K275N 0.21 deleterious(0) probably_damaging(0.959) TCGA-NC-A5HQ-01 13 42164889 42164889 C T VWA8 Missense_Mutation p.E1667K 0.21 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HQ-01 13 47409376 47409376 G T HTR2A Missense_Mutation p.P338T 0.34 deleterious(0) probably_damaging(1) TCGA-NC-A5HQ-01 13 60240742 60240742 C A DIAPH3 Silent p.L1186L 0.22 TCGA-NC-A5HQ-01 13 72049868 72049868 C A DACH1 Missense_Mutation p.A664S 0.19 benign(0.024) TCGA-NC-A5HQ-01 14 105177440 105177440 G T INF2 Missense_Mutation p.G779C 0.16 deleterious(0) unknown(0) TCGA-NC-A5HQ-01 14 106805251 106805251 G A IGHV4-31 Silent p.S104S 0.37 TCGA-NC-A5HQ-01 14 20404746 20404747 CT - OR4K1 Frame_Shift_Del p.S308Lfs*17 0.19 TCGA-NC-A5HQ-01 14 22564602 22564612 CAAGTGTGGCC - TRDV1 Frame_Shift_Del p.S19Efs*24 0.12 TCGA-NC-A5HQ-01 14 36988259 36988259 C T NKX2-1 Missense_Mutation p.D132N 0.45 deleterious(0.03) benign(0.1) TCGA-NC-A5HQ-01 14 52782035 52782035 G T PTGER2 Missense_Mutation p.A257S 0.16 tolerated(0.2) benign(0.079) TCGA-NC-A5HQ-01 14 64655303 64655303 C A SYNE2 Silent p.L5916L 0.17 TCGA-NC-A5HQ-01 14 65239382 65239382 G A SPTB Silent p.D1823D 0.15 TCGA-NC-A5HQ-01 14 74411567 74411567 G T FAM161B Nonsense_Mutation p.C195* 0.27 TCGA-NC-A5HQ-01 14 81662451 81662451 C A GTF2A1 Splice_Site p.X204_splice 0.50 TCGA-NC-A5HQ-01 14 91774710 91774710 C T CCDC88C Silent p.E997E 0.14 TCGA-NC-A5HQ-01 14 93712281 93712281 G T BTBD7 Missense_Mutation p.P825T 0.56 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-NC-A5HQ-01 14 96157188 96157188 G T TCL1B Missense_Mutation p.G93V 0.14 deleterious(0) probably_damaging(1) TCGA-NC-A5HQ-01 15 20636483 20636483 C A HERC2P3 RNA 0.28 TCGA-NC-A5HQ-01 15 25415782 25415782 C G SNORD115-3 5'Flank 0.20 TCGA-NC-A5HQ-01 15 25467575 25467575 G C SNORD115-28 RNA 0.28 TCGA-NC-A5HQ-01 15 25959290 25959290 G C ATP10A Missense_Mutation p.I625M 0.28 tolerated(0.18) possibly_damaging(0.703) TCGA-NC-A5HQ-01 15 34105098 34105098 T C RYR3 Missense_Mutation p.L3431P 0.18 probably_damaging(0.947) TCGA-NC-A5HQ-01 15 40513024 40513024 A G BUB1B 3'UTR 0.13 TCGA-NC-A5HQ-01 15 43622678 43622678 G A LCMT2 Missense_Mutation p.R4W 0.28 deleterious(0) probably_damaging(0.975) TCGA-NC-A5HQ-01 15 49575902 49575902 G A GALK2 Missense_Mutation p.R248Q 0.16 deleterious(0.02) possibly_damaging(0.908) TCGA-NC-A5HQ-01 15 56132846 56132846 G A NEDD4 Missense_Mutation p.R987W 0.20 deleterious(0) probably_damaging(1) TCGA-NC-A5HQ-01 15 56132866 56132866 G A NEDD4 Missense_Mutation p.S980F 0.20 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HQ-01 15 56958662 56958662 G A ZNF280D Missense_Mutation p.T642M 0.08 tolerated(0.14) probably_damaging(0.932) TCGA-NC-A5HQ-01 15 57543577 57543577 C A TCF12 Missense_Mutation p.Q382K 0.12 deleterious(0.02) probably_damaging(0.992) TCGA-NC-A5HQ-01 15 74425163 74425163 C A ISLR2 Missense_Mutation p.P23Q 0.28 tolerated(0.3) benign(0.034) TCGA-NC-A5HQ-01 15 78474886 78474886 C G ACSBG1 Missense_Mutation p.Q272H 0.35 deleterious(0.02) benign(0.035) TCGA-NC-A5HQ-01 15 79092543 79092543 G A ADAMTS7 Silent p.C149C 0.15 TCGA-NC-A5HQ-01 15 91811676 91811676 A G SV2B Missense_Mutation p.Y405C 0.25 deleterious(0) probably_damaging(0.995) TCGA-NC-A5HQ-01 16 10729661 10729661 G T TEKT5 Missense_Mutation p.R401S 0.39 deleterious(0.01) probably_damaging(0.997) TCGA-NC-A5HQ-01 16 15026742 15026742 G - NPIPA1 5'Flank 0.16 TCGA-NC-A5HQ-01 16 21629239 21629239 T A METTL9 Missense_Mutation p.L137Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HQ-01 16 21629242 21629242 T A METTL9 Missense_Mutation p.L138H 0.13 deleterious(0) probably_damaging(0.99) TCGA-NC-A5HQ-01 16 28992796 28992796 A C SPNS1 Silent p.T223T 0.16 TCGA-NC-A5HQ-01 16 31308895 31308895 G C ITGAM Missense_Mutation p.D473H 0.19 deleterious(0) probably_damaging(0.991) TCGA-NC-A5HQ-01 16 3339608 3339608 C T ZNF263 Nonsense_Mutation p.R368* 0.24 TCGA-NC-A5HQ-01 16 48201406 48201406 C A ABCC11 Splice_Site p.X1352_splice 0.41 TCGA-NC-A5HQ-01 16 5055926 5055926 C T SEC14L5 Silent p.F438F 0.33 TCGA-NC-A5HQ-01 16 55364237 55364237 G A IRX6 3'UTR 0.44 TCGA-NC-A5HQ-01 16 67200492 67200492 C A HSF4 Missense_Mutation p.A198E 0.39 deleterious(0) benign(0.331) TCGA-NC-A5HQ-01 16 67221640 67221640 C T EXOC3L1 Silent p.T176T 0.45 TCGA-NC-A5HQ-01 16 74384592 74384592 T G RP11-252A24.2 RNA 0.59 TCGA-NC-A5HQ-01 16 81175000 81175000 G A PKD1L2 RNA 0.50 TCGA-NC-A5HQ-01 16 81180976 81180976 C A PKD1L2 RNA 0.42 TCGA-NC-A5HQ-01 16 84127353 84127353 C G MBTPS1 Missense_Mutation p.E233D 0.41 tolerated(0.18) benign(0.075) TCGA-NC-A5HQ-01 16 84872284 84872284 G T CRISPLD2 Missense_Mutation p.M61I 0.51 deleterious(0.04) benign(0.063) TCGA-NC-A5HQ-01 16 8995050 8995050 G A USP7 Missense_Mutation p.R697W 0.14 deleterious(0) benign(0.048) TCGA-NC-A5HQ-01 17 2297359 2297359 C A MNT Missense_Mutation p.R262L 0.57 deleterious(0) possibly_damaging(0.784) TCGA-NC-A5HQ-01 17 30658815 30658817 TTC - C17orf75 In_Frame_Del p.E386del 0.15 TCGA-NC-A5HQ-01 17 32964508 32964508 A T TMEM132E Missense_Mutation p.S738C 0.27 deleterious(0.01) probably_damaging(0.912) TCGA-NC-A5HQ-01 17 34263799 34263799 C A LYZL6 Missense_Mutation p.A113S 0.16 deleterious(0.03) possibly_damaging(0.893) TCGA-NC-A5HQ-01 17 3563163 3563163 C T CTNS Silent p.N288N 0.48 TCGA-NC-A5HQ-01 17 35872383 35872383 C T DUSP14 Silent p.S3S 0.46 TCGA-NC-A5HQ-01 17 38421340 38421340 A G WIPF2 Silent p.P304P 0.46 TCGA-NC-A5HQ-01 17 38430173 38430173 G T WIPF2 Missense_Mutation p.A368S 0.38 tolerated(0.12) benign(0.025) TCGA-NC-A5HQ-01 17 56619194 56619194 A T C17orf47 Silent p.A565A 0.21 TCGA-NC-A5HQ-01 17 60030329 60030329 G A MED13 Silent p.G2038G 0.39 TCGA-NC-A5HQ-01 17 67041312 67041312 C T ABCA9 Splice_Site p.X157_splice 0.13 TCGA-NC-A5HQ-01 17 67045443 67045443 A T ABCA9 Silent p.A95A 0.40 TCGA-NC-A5HQ-01 17 73723808 73723808 A C ITGB4 Missense_Mutation p.E114A 0.16 deleterious(0.01) possibly_damaging(0.803) TCGA-NC-A5HQ-01 17 7578272 7578272 G T TP53 Missense_Mutation p.H193N 0.42 deleterious(0) probably_damaging(1) TCGA-NC-A5HQ-01 17 78445556 78445556 G A NPTX1 Silent p.G351G 0.18 TCGA-NC-A5HQ-01 18 21141435 21141435 C A NPC1 Nonsense_Mutation p.G174* 0.26 TCGA-NC-A5HQ-01 18 22805799 22805799 T C ZNF521 Missense_Mutation p.I695V 0.35 tolerated(0.99) benign(0.326) TCGA-NC-A5HQ-01 18 2732428 2732428 C A SMCHD1 Missense_Mutation p.Q1072K 0.27 tolerated(0.83) benign(0.338) TCGA-NC-A5HQ-01 18 56897656 56897656 G T GRP Missense_Mutation p.G135C 0.27 deleterious_low_confidence(0.03) possibly_damaging(0.635) TCGA-NC-A5HQ-01 18 8114824 8114824 A T PTPRM Missense_Mutation p.K722N 0.25 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HQ-01 18 8784053 8784053 C T SOGA2 Missense_Mutation p.R315W 0.26 deleterious(0.02) possibly_damaging(0.663) TCGA-NC-A5HQ-01 19 11660456 11660456 T G CNN1 Missense_Mutation p.M247R 0.42 deleterious(0) probably_damaging(0.985) TCGA-NC-A5HQ-01 19 1360283 1360283 G A MUM1 Silent p.G122G 0.26 TCGA-NC-A5HQ-01 19 17986886 17986886 C A SLC5A5 Silent p.A223A 0.13 TCGA-NC-A5HQ-01 19 20748474 20748474 T C ZNF737 5'UTR 0.06 TCGA-NC-A5HQ-01 19 35800914 35800914 G A MAG Missense_Mutation p.E457K 0.32 tolerated(0.1) benign(0.041) TCGA-NC-A5HQ-01 19 35941510 35941510 G T FFAR2 Silent p.L298L 0.19 TCGA-NC-A5HQ-01 19 36278226 36278228 GTG TT ARHGAP33 Frame_Shift_Del p.C759Ffs*37 0.15 TCGA-NC-A5HQ-01 19 37677393 37677393 C T ZNF585B Missense_Mutation p.S349N 0.18 deleterious(0.01) benign(0.041) TCGA-NC-A5HQ-01 19 44591012 44591012 G C ZNF284 Missense_Mutation p.G461R 0.39 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HQ-01 19 52149098 52149098 A G SIGLEC14 Missense_Mutation p.C213R 0.22 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HQ-01 19 52272897 52272897 C A FPR2 Nonsense_Mutation p.S329* 0.14 TCGA-NC-A5HQ-01 19 52857584 52857584 A G ZNF610 Missense_Mutation p.I91V 0.31 tolerated(0.64) benign(0.001) TCGA-NC-A5HQ-01 19 54198466 54198466 C T MIR525 5'Flank 0.05 TCGA-NC-A5HQ-01 19 54257295 54257295 A G MIR527 RNA 0.10 TCGA-NC-A5HQ-01 19 54409965 54409965 G A PRKCG Missense_Mutation p.G637D 0.07 tolerated(0.2) benign(0.032) TCGA-NC-A5HQ-01 19 55021806 55021806 T G LAIR2 3'UTR 0.12 TCGA-NC-A5HQ-01 19 55085939 55085939 A T LILRA2 Missense_Mutation p.Q81L 0.22 deleterious(0.02) benign(0.151) TCGA-NC-A5HQ-01 19 55301541 55301541 G T CTB-61M7.1 RNA 0.38 TCGA-NC-A5HQ-01 19 55597769 55597769 C G EPS8L1 Missense_Mutation p.P554A 0.27 tolerated(0.81) benign(0.043) TCGA-NC-A5HQ-01 19 56544123 56544123 C A NLRP5 Missense_Mutation p.P808H 0.14 deleterious(0.03) benign(0.087) TCGA-NC-A5HQ-01 19 57839519 57839519 C T ZNF543 Missense_Mutation p.T230I 0.21 deleterious(0.01) possibly_damaging(0.457) TCGA-NC-A5HQ-01 19 58102286 58102286 C A ZIK1 Missense_Mutation p.H369Q 0.37 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HQ-01 19 6182892 6182892 T C ACSBG2 Missense_Mutation p.F346S 0.44 deleterious(0.04) probably_damaging(0.984) TCGA-NC-A5HQ-01 19 9083905 9083905 C G MUC16 Missense_Mutation p.G2637A 0.40 unknown(0) TCGA-NC-A5HQ-01 1 100553747 100553749 CTC - SASS6 In_Frame_Del p.G573del 0.16 TCGA-NC-A5HQ-01 1 101705229 101705229 C A S1PR1 Missense_Mutation p.T230N 0.32 deleterious(0) possibly_damaging(0.763) TCGA-NC-A5HQ-01 1 104113161 104113161 A T AMY2B Intron 0.19 TCGA-NC-A5HQ-01 1 104162249 104162249 A T AMY2A Missense_Mutation p.E196V 0.08 deleterious(0.02) benign(0.338) TCGA-NC-A5HQ-01 1 108679276 108679276 C T SLC25A24 Silent p.%3D 0.28 TCGA-NC-A5HQ-01 1 109815571 109815571 G T CELSR2 Missense_Mutation p.A2754S 0.30 tolerated_low_confidence(0.68) benign(0.101) TCGA-NC-A5HQ-01 1 110134867 110134867 G T GNAI3 3'UTR 0.26 TCGA-NC-A5HQ-01 1 111061024 111061024 T C KCNA10 Missense_Mutation p.Y129C 0.26 deleterious(0) probably_damaging(1) TCGA-NC-A5HQ-01 1 116605432 116605432 G A SLC22A15 Silent p.G407G 0.29 TCGA-NC-A5HQ-01 1 12711332 12711332 G T AADACL4 Missense_Mutation p.G120V 0.17 deleterious(0.01) probably_damaging(0.967) TCGA-NC-A5HQ-01 1 147091437 147091437 C G BCL9 Silent p.V492V 0.36 TCGA-NC-A5HQ-01 1 157716443 157716443 C A FCRL2 3'UTR 0.35 TCGA-NC-A5HQ-01 1 158152712 158152712 G T CD1D Missense_Mutation p.G218C 0.10 deleterious(0) probably_damaging(0.985) TCGA-NC-A5HQ-01 1 158323797 158323797 C A CD1E Missense_Mutation p.L7I 0.52 tolerated(0.14) benign(0.064) TCGA-NC-A5HQ-01 1 158911980 158911980 A T PYHIN1 Nonsense_Mutation p.K265* 0.11 TCGA-NC-A5HQ-01 1 160648918 160648918 C T CD48 Missense_Mutation p.R219Q 0.07 tolerated(0.27) benign(0.049) TCGA-NC-A5HQ-01 1 161018965 161018965 G T ARHGAP30 Missense_Mutation p.L616I 0.15 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HQ-01 1 162546619 162546619 G A UAP1 Silent p.G111G 0.14 TCGA-NC-A5HQ-01 1 169676502 169676502 A C SELL Nonsense_Mutation p.Y200* 0.17 TCGA-NC-A5HQ-01 1 176175762 176175762 G A RFWD2 Missense_Mutation p.P118L 0.11 tolerated(0.16) benign(0.038) TCGA-NC-A5HQ-01 1 183083692 183083692 G T LAMC1 Nonsense_Mutation p.E350* 0.28 TCGA-NC-A5HQ-01 1 190067957 190067957 T A BRINP3 Nonsense_Mutation p.K498* 0.23 TCGA-NC-A5HQ-01 1 192127886 192127886 G C RGS18 Missense_Mutation p.R40T 0.21 tolerated(0.05) benign(0.043) TCGA-NC-A5HQ-01 1 197407822 197407822 C A CRB1 Intron 0.29 TCGA-NC-A5HQ-01 1 205770126 205770126 G T SLC41A1 Silent p.L145L 0.22 TCGA-NC-A5HQ-01 1 21048467 21048467 T G SH2D5 Missense_Mutation p.S364R 0.21 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HQ-01 1 216741391 216741391 C A ESRRG Missense_Mutation p.R218S 0.18 tolerated(0.12) probably_damaging(0.995) TCGA-NC-A5HQ-01 1 217604707 217604707 C A GPATCH2 Missense_Mutation p.G456V 0.16 deleterious(0.01) benign(0.108) TCGA-NC-A5HQ-01 1 226924733 226924733 C A ITPKB Missense_Mutation p.V143L 0.21 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-NC-A5HQ-01 1 231502161 231502161 A G EGLN1 Missense_Mutation p.F426S 0.19 deleterious_low_confidence(0) benign(0.11) TCGA-NC-A5HQ-01 1 237944922 237944922 G C RYR2 Missense_Mutation p.V3980L 0.27 probably_damaging(0.995) TCGA-NC-A5HQ-01 1 241661225 241661225 C T FH Missense_Mutation p.G479E 0.20 deleterious(0.01) benign(0.236) TCGA-NC-A5HQ-01 1 247150379 247150379 A T ZNF695 Missense_Mutation p.S480T 0.22 tolerated(1) benign(0.022) TCGA-NC-A5HQ-01 1 247463861 247463861 T A ZNF496 Missense_Mutation p.H575L 0.23 deleterious(0) probably_damaging(1) TCGA-NC-A5HQ-01 1 247835471 247835471 A C OR13G1 Missense_Mutation p.N291K 0.28 deleterious(0) probably_damaging(0.996) TCGA-NC-A5HQ-01 1 248201816 248201816 G A OR2L2 Missense_Mutation p.D83N 0.20 tolerated(1) benign(0.002) TCGA-NC-A5HQ-01 1 25573133 25573133 G A C1orf63 Missense_Mutation p.P108S 0.26 tolerated(0.27) unknown(0) TCGA-NC-A5HQ-01 1 27942022 27942022 C T FGR Missense_Mutation p.R314Q 0.33 tolerated(0.6) probably_damaging(0.994) TCGA-NC-A5HQ-01 1 32264044 32264044 A G SPOCD1 Missense_Mutation p.L676P 0.17 tolerated(1) benign(0.004) TCGA-NC-A5HQ-01 1 32792571 32792571 G C HDAC1 Silent p.T129T 0.25 TCGA-NC-A5HQ-01 1 33404041 33404041 C A RNF19B Missense_Mutation p.A568S 0.25 deleterious(0.04) possibly_damaging(0.501) TCGA-NC-A5HQ-01 1 39549864 39549864 C A MACF1 5'UTR 0.28 TCGA-NC-A5HQ-01 1 46497091 46497091 A T MAST2 Silent p.S1007S 0.11 TCGA-NC-A5HQ-01 1 46685857 46685857 T A LURAP1 Missense_Mutation p.W229R 0.24 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HQ-01 1 47904344 47904344 C T FOXD2 Silent p.L179L 0.20 TCGA-NC-A5HQ-01 1 50884991 50884991 T A DMRTA2 Silent p.P325P 0.12 TCGA-NC-A5HQ-01 1 53544258 53544258 A T PODN Missense_Mutation p.K407M 0.25 deleterious(0) probably_damaging(1) TCGA-NC-A5HQ-01 1 57535042 57535042 G A DAB1 Silent p.N218N 0.05 TCGA-NC-A5HQ-01 1 6196690 6196690 C A CHD5 Missense_Mutation p.R861S 0.22 tolerated(0.14) probably_damaging(0.992) TCGA-NC-A5HQ-01 1 75596279 75596279 C T LHX8 5'UTR 0.26 TCGA-NC-A5HQ-01 1 78392542 78392542 G C NEXN Missense_Mutation p.E277Q 0.27 tolerated(0.07) probably_damaging(0.999) TCGA-NC-A5HQ-01 1 7880205 7880205 G C PER3 Missense_Mutation p.L555F 0.04 deleterious(0.01) possibly_damaging(0.86) TCGA-NC-A5HQ-01 1 976900 976900 G T AGRN Missense_Mutation p.R332L 0.25 deleterious(0.04) benign(0.25) TCGA-NC-A5HQ-01 20 16025285 16025285 G A MACROD2 Intron 0.35 TCGA-NC-A5HQ-01 20 19560662 19560662 G T SLC24A3 Missense_Mutation p.A123S 0.38 deleterious(0) probably_damaging(0.996) TCGA-NC-A5HQ-01 20 20232394 20232394 G T C20orf26 Missense_Mutation p.G772V 0.32 deleterious(0) probably_damaging(1) TCGA-NC-A5HQ-01 20 20257921 20257921 C A C20orf26 Missense_Mutation p.S872Y 0.17 tolerated(0.45) benign(0.006) TCGA-NC-A5HQ-01 20 2298103 2298103 C T TGM3 Missense_Mutation p.P319S 0.39 tolerated(0.66) probably_damaging(0.975) TCGA-NC-A5HQ-01 20 239786 239786 G A DEFB132 Missense_Mutation p.E43K 0.06 deleterious(0) probably_damaging(0.945) TCGA-NC-A5HQ-01 20 33508417 33508417 G T ACSS2 Nonsense_Mutation p.E363* 0.04 TCGA-NC-A5HQ-01 20 36937329 36937329 C A BPI Intron 0.34 TCGA-NC-A5HQ-01 20 56090777 56090777 C A CTCFL Silent p.T391T 0.15 TCGA-NC-A5HQ-01 20 61477173 61477173 T C TCFL5 Intron 0.31 TCGA-NC-A5HQ-01 20 61541342 61541342 T G DIDO1 Missense_Mutation p.E290D 0.23 probably_damaging(0.937) TCGA-NC-A5HQ-01 20 62200554 62200554 C A HELZ2 Missense_Mutation p.R345S 0.12 tolerated(0.14) benign(0.01) TCGA-NC-A5HQ-01 20 9525075 9525075 C A PAK7 Missense_Mutation p.V604F 0.40 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HQ-01 21 33371154 33371154 C A HUNK Missense_Mutation p.P601Q 0.17 deleterious_low_confidence(0) benign(0.039) TCGA-NC-A5HQ-01 21 44180499 44180499 T C PDE9A Missense_Mutation p.V320A 0.22 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HQ-01 21 45678527 45678527 C T DNMT3L Missense_Mutation p.G132E 0.17 tolerated(1) benign(0.011) TCGA-NC-A5HQ-01 21 45678532 45678532 G A DNMT3L Silent p.T130T 0.19 TCGA-NC-A5HQ-01 21 46021072 46021072 T A KRTAP10-7 Missense_Mutation p.V184E 0.14 deleterious(0.03) unknown(0) TCGA-NC-A5HQ-01 21 46032266 46032266 C A KRTAP10-8 Silent p.P83P 0.22 TCGA-NC-A5HQ-01 21 47552344 47552344 G T COL6A2 Missense_Mutation p.V980L 0.13 deleterious(0.03) possibly_damaging(0.907) TCGA-NC-A5HQ-01 21 47692734 47692734 G A MCM3AP Nonsense_Mutation p.Q736* 0.30 TCGA-NC-A5HQ-01 22 25115745 25115745 A G PIWIL3 Silent p.Y834Y 0.23 TCGA-NC-A5HQ-01 22 25313695 25313695 G T SGSM1 Missense_Mutation p.R1055L 0.14 deleterious(0) probably_damaging(1) TCGA-NC-A5HQ-01 22 25625496 25625496 G T CRYBB2 Missense_Mutation p.A134S 0.26 tolerated(0.12) benign(0.186) TCGA-NC-A5HQ-01 22 37485669 37485669 C T TMPRSS6 Missense_Mutation p.R271Q 0.26 deleterious(0.02) probably_damaging(0.917) TCGA-NC-A5HQ-01 22 42422817 42422817 G T WBP2NL Nonsense_Mutation p.G188* 0.19 TCGA-NC-A5HQ-01 22 51045348 51045348 G T MAPK8IP2 Splice_Site p.X744_splice 0.17 TCGA-NC-A5HQ-01 2 106690446 106690446 C T C2orf40 Missense_Mutation p.P78S 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-NC-A5HQ-01 2 107040474 107040474 C A RGPD3 Missense_Mutation p.G1317C 0.30 deleterious(0) probably_damaging(0.96) TCGA-NC-A5HQ-01 2 110907833 110907833 C A NPHP1 Missense_Mutation p.V418F 0.14 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HQ-01 2 114715019 114715019 G A ACTR3 Missense_Mutation p.G415E 0.17 deleterious(0.01) probably_damaging(0.928) TCGA-NC-A5HQ-01 2 1204858 1204858 T C SNTG2 Missense_Mutation p.S221P 0.31 tolerated(0.08) benign(0.048) TCGA-NC-A5HQ-01 2 127957085 127957085 T G CYP27C1 Missense_Mutation p.D140A 0.10 tolerated(0.39) benign(0.006) TCGA-NC-A5HQ-01 2 128046414 128046414 A G ERCC3 Silent p.R283R 0.39 TCGA-NC-A5HQ-01 2 141528558 141528558 G C LRP1B Missense_Mutation p.L1840V 0.18 benign(0.364) TCGA-NC-A5HQ-01 2 162224373 162224373 G A PSMD14 Missense_Mutation p.V67I 0.14 tolerated(0.6) benign(0.171) TCGA-NC-A5HQ-01 2 162274728 162274728 G A TBR1 Missense_Mutation p.M288I 0.46 tolerated(0.35) benign(0.002) TCGA-NC-A5HQ-01 2 168074707 168074707 C A XIRP2 Missense_Mutation p.P252H 0.37 probably_damaging(0.987) TCGA-NC-A5HQ-01 2 168102557 168102557 T C XIRP2 Missense_Mutation p.I1552T 0.32 probably_damaging(0.991) TCGA-NC-A5HQ-01 2 179474891 179474891 A T TTN Missense_Mutation p.V17121D 0.22 TCGA-NC-A5HQ-01 2 179489270 179489270 C A TTN Missense_Mutation p.D14913Y 0.18 TCGA-NC-A5HQ-01 2 179641828 179641828 G A TTN Intron 0.20 TCGA-NC-A5HQ-01 2 183848042 183848042 G C NCKAP1 Missense_Mutation p.S364C 0.41 deleterious(0.04) possibly_damaging(0.556) TCGA-NC-A5HQ-01 2 187692685 187692685 C G ZSWIM2 3'UTR 0.09 TCGA-NC-A5HQ-01 2 207173425 207173425 G T ZDBF2 Missense_Mutation p.W1391C 0.16 deleterious(0) possibly_damaging(0.759) TCGA-NC-A5HQ-01 2 209188973 209188973 A T PIKFYVE Missense_Mutation p.E766D 0.37 tolerated(0.07) probably_damaging(0.973) TCGA-NC-A5HQ-01 2 212285257 212285257 T A ERBB4 Missense_Mutation p.D1015V 0.13 deleterious(0) possibly_damaging(0.821) TCGA-NC-A5HQ-01 2 220251647 220251647 C T DNPEP Silent p.E62E 0.36 TCGA-NC-A5HQ-01 2 220499258 220499258 G T SLC4A3 Missense_Mutation p.G587W 0.37 deleterious(0) probably_damaging(1) TCGA-NC-A5HQ-01 2 225659670 225659670 T A DOCK10 Missense_Mutation p.S1694C 0.19 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HQ-01 2 228881618 228881618 T A SPHKAP Missense_Mutation p.M1318L 0.36 deleterious(0) probably_damaging(0.992) TCGA-NC-A5HQ-01 2 230672533 230672533 G T TRIP12 Missense_Mutation p.T748N 0.06 tolerated(0.11) benign(0.011) TCGA-NC-A5HQ-01 2 24929732 24929732 A T NCOA1 Missense_Mutation p.S465C 0.16 deleterious(0) benign(0.376) TCGA-NC-A5HQ-01 2 25057361 25057361 C A ADCY3 Missense_Mutation p.D654Y 0.39 deleterious(0.02) probably_damaging(0.95) TCGA-NC-A5HQ-01 2 27361281 27361281 C G C2orf53 5'UTR 0.31 TCGA-NC-A5HQ-01 2 27556633 27556633 G C GTF3C2 Missense_Mutation p.L541V 0.40 deleterious(0.04) probably_damaging(0.994) TCGA-NC-A5HQ-01 2 31457547 31457547 G A EHD3 Silent p.T20T 0.31 TCGA-NC-A5HQ-01 2 68622994 68622994 C T PLEK 3'UTR 0.31 TCGA-NC-A5HQ-01 2 79363873 79363873 C G REG1P RNA 0.25 TCGA-NC-A5HQ-01 2 85049006 85049006 G T TRABD2A 3'UTR 0.27 TCGA-NC-A5HQ-01 2 89278457 89278457 G T IGKV3-7 Missense_Mutation p.P16Q 0.31 tolerated(0.13) possibly_damaging(0.783) TCGA-NC-A5HQ-01 2 89399535 89399535 G A IGKV1-16 Silent p.A56A 0.35 TCGA-NC-A5HQ-01 2 95756256 95756256 G T MRPS5 Missense_Mutation p.R315S 0.36 tolerated(0.72) possibly_damaging(0.524) TCGA-NC-A5HQ-01 2 95847604 95847604 G T ZNF2 Missense_Mutation p.C344F 0.30 deleterious(0) probably_damaging(1) TCGA-NC-A5HQ-01 2 98195409 98195409 T A ANKRD36B RNA 0.30 TCGA-NC-A5HQ-01 3 119134875 119134875 A T ARHGAP31 Missense_Mutation p.T1367S 0.54 tolerated(0.33) possibly_damaging(0.585) TCGA-NC-A5HQ-01 3 123021981 123021981 G A ADCY5 Missense_Mutation p.A882V 0.15 tolerated(0.73) benign(0.001) TCGA-NC-A5HQ-01 3 123419524 123419524 G A MYLK Missense_Mutation p.R931W 0.18 deleterious(0) benign(0.03) TCGA-NC-A5HQ-01 3 128707651 128707651 G T KIAA1257 Missense_Mutation p.P125T 0.12 deleterious(0) probably_damaging(0.995) TCGA-NC-A5HQ-01 3 130381080 130381080 C T COL6A6 Missense_Mutation p.L2144F 0.13 deleterious(0.02) probably_damaging(1) TCGA-NC-A5HQ-01 3 131388581 131388581 A T CPNE4 Missense_Mutation p.W207R 0.52 deleterious(0) possibly_damaging(0.494) TCGA-NC-A5HQ-01 3 155860967 155860967 C T KCNAB1 Intron 0.04 TCGA-NC-A5HQ-01 3 160945059 160945059 G C NMD3 Missense_Mutation p.W68C 0.09 deleterious(0) probably_damaging(0.981) TCGA-NC-A5HQ-01 3 16646849 16646849 G A DAZL 5'Flank 0.38 TCGA-NC-A5HQ-01 3 169548347 169548347 C G LRRIQ4 Missense_Mutation p.P421R 0.76 tolerated(0.11) probably_damaging(0.942) TCGA-NC-A5HQ-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.67 deleterious(0.02) probably_damaging(0.959) TCGA-NC-A5HQ-01 3 183528329 183528329 C T YEATS2 Silent p.F1409F 0.83 TCGA-NC-A5HQ-01 3 184689506 184689506 G C VPS8 Missense_Mutation p.R1129T 0.05 deleterious(0) probably_damaging(0.979) TCGA-NC-A5HQ-01 3 21462918 21462918 C - ZNF385D Frame_Shift_Del p.E326Nfs*15 0.31 TCGA-NC-A5HQ-01 3 38620936 38620936 C A SCN5A Missense_Mutation p.R1093S 0.52 tolerated(0.77) benign(0.06) TCGA-NC-A5HQ-01 3 43122716 43122716 T A POMGNT2 Missense_Mutation p.T70S 0.71 tolerated(0.31) benign(0.003) TCGA-NC-A5HQ-01 3 73433311 73433311 C T PDZRN3 Silent p.G802G 0.41 TCGA-NC-A5HQ-01 3 73433312 73433312 C A PDZRN3 Missense_Mutation p.G802V 0.43 deleterious(0.04) benign(0.082) TCGA-NC-A5HQ-01 3 73673863 73673863 G A PDZRN3 Silent p.C38C 0.20 TCGA-NC-A5HQ-01 3 98518360 98518360 G A DCBLD2 Silent p.A728A 0.12 TCGA-NC-A5HQ-01 4 107956761 107956761 G C DKK2 5'UTR 0.36 TCGA-NC-A5HQ-01 4 123175379 123175379 A G KIAA1109 Silent p.K1984K 0.47 TCGA-NC-A5HQ-01 4 177094460 177094460 C A WDR17 Missense_Mutation p.P1135H 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-NC-A5HQ-01 4 5642298 5642298 C G EVC2 Missense_Mutation p.Q471H 0.30 deleterious(0) probably_damaging(0.983) TCGA-NC-A5HQ-01 4 98865149 98865149 G T STPG2 Missense_Mutation p.H315N 0.31 tolerated(1) benign(0) TCGA-NC-A5HQ-01 5 108382815 108382815 C T FER Nonsense_Mutation p.Q614* 0.10 TCGA-NC-A5HQ-01 5 120021859 120021859 C G PRR16 Missense_Mutation p.P101A 0.15 tolerated_low_confidence(0.95) benign(0.023) TCGA-NC-A5HQ-01 5 121409816 121409816 G A LOX Silent p.A309A 0.15 TCGA-NC-A5HQ-01 5 128932251 128932251 G A ADAMTS19 Splice_Site p.X452_splice 0.14 TCGA-NC-A5HQ-01 5 130831301 130831301 C T RAPGEF6 Missense_Mutation p.G491D 0.13 deleterious(0.02) probably_damaging(1) TCGA-NC-A5HQ-01 5 134785583 134785583 G C TIFAB Missense_Mutation p.T16R 0.12 tolerated(0.23) benign(0.012) TCGA-NC-A5HQ-01 5 140263131 140263131 C A PCDHA13 Silent p.T426T 0.31 TCGA-NC-A5HQ-01 5 140581300 140581300 G T PCDHB11 Silent p.P651P 0.21 TCGA-NC-A5HQ-01 5 140589974 140589974 C T PCDHB12 Missense_Mutation p.P499S 0.35 tolerated_low_confidence(0.08) benign(0.285) TCGA-NC-A5HQ-01 5 140604200 140604200 T A PCDHB14 Missense_Mutation p.S375T 0.18 deleterious_low_confidence(0.02) benign(0.026) TCGA-NC-A5HQ-01 5 140793384 140793384 G T PCDHGA10 Silent p.L214L 0.35 TCGA-NC-A5HQ-01 5 141391586 141391586 G T GNPDA1 Silent p.I5I 0.17 TCGA-NC-A5HQ-01 5 147204261 147204261 T C SPINK1 Missense_Mutation p.Q68R 0.18 tolerated(0.24) benign(0.198) TCGA-NC-A5HQ-01 5 149435629 149435629 G T CSF1R Silent p.V838V 0.14 TCGA-NC-A5HQ-01 5 150646947 150646947 G A GM2A Missense_Mutation p.V173I 0.14 tolerated(0.84) benign(0.003) TCGA-NC-A5HQ-01 5 158139274 158139274 G - EBF1 Frame_Shift_Del p.N480Tfs*9 0.21 TCGA-NC-A5HQ-01 5 169702824 169702824 C A LCP2 Nonsense_Mutation p.E77* 0.17 TCGA-NC-A5HQ-01 5 176072904 176072904 A G EIF4E1B Missense_Mutation p.T218A 0.38 tolerated(0.54) benign(0.022) TCGA-NC-A5HQ-01 5 178553051 178553051 T A ADAMTS2 Nonsense_Mutation p.K900* 0.40 TCGA-NC-A5HQ-01 5 31464342 31464342 C A DROSHA Splice_Site p.X858_splice 0.34 TCGA-NC-A5HQ-01 5 36953841 36953841 G T NIPBL Missense_Mutation p.G15W 0.28 deleterious(0) probably_damaging(1) TCGA-NC-A5HQ-01 5 41065568 41065568 C A MROH2B Missense_Mutation p.A76S 0.30 tolerated(0.08) possibly_damaging(0.798) TCGA-NC-A5HQ-01 5 42719543 42719543 C T GHR 3'UTR 0.30 TCGA-NC-A5HQ-01 5 67592075 67592075 C T PIK3R1 Nonsense_Mutation p.R631* 0.19 TCGA-NC-A5HQ-01 5 74034216 74034216 G A GFM2 Missense_Mutation p.P416L 0.04 deleterious(0.01) probably_damaging(0.986) TCGA-NC-A5HQ-01 5 76330270 76330270 C T AGGF1 Missense_Mutation p.R80C 0.17 tolerated(0.06) benign(0) TCGA-NC-A5HQ-01 5 79034711 79034711 G T CMYA5 Missense_Mutation p.V3375L 0.41 benign(0.293) TCGA-NC-A5HQ-01 5 80550934 80550934 C G CKMT2 Missense_Mutation p.N190K 0.34 tolerated(1) benign(0.003) TCGA-NC-A5HQ-01 5 82876255 82876255 C A VCAN 3'UTR 0.32 TCGA-NC-A5HQ-01 6 101173428 101173428 C G ASCC3 Missense_Mutation p.R630P 0.21 deleterious(0) probably_damaging(1) TCGA-NC-A5HQ-01 6 10556528 10556528 C A GCNT2 Intron 0.25 TCGA-NC-A5HQ-01 6 109748198 109748198 C G PPIL6 Splice_Site p.X162_splice 0.19 TCGA-NC-A5HQ-01 6 110062665 110062665 G T FIG4 Missense_Mutation p.R265L 0.21 deleterious(0) probably_damaging(0.921) TCGA-NC-A5HQ-01 6 124604264 124604264 A T NKAIN2 Missense_Mutation p.Q56H 0.17 tolerated(0.09) probably_damaging(0.998) TCGA-NC-A5HQ-01 6 132171181 132171181 G T ENPP1 Missense_Mutation p.C122F 0.15 deleterious(0) probably_damaging(1) TCGA-NC-A5HQ-01 6 132636805 132636805 T A MOXD1 Missense_Mutation p.I493F 0.15 tolerated(0.15) probably_damaging(0.977) TCGA-NC-A5HQ-01 6 13487114 13487114 G - GFOD1 Frame_Shift_Del p.V5Wfs*17 0.13 TCGA-NC-A5HQ-01 6 146350800 146350800 C G GRM1 Silent p.A49A 0.22 TCGA-NC-A5HQ-01 6 151673854 151673854 C A AKAP12 Missense_Mutation p.T1443K 0.26 deleterious(0.02) possibly_damaging(0.534) TCGA-NC-A5HQ-01 6 153073330 153073330 G A VIP Silent p.K6K 0.20 TCGA-NC-A5HQ-01 6 160952799 160952799 A C LPA Missense_Mutation p.F2029V 0.25 deleterious(0.01) benign(0.411) TCGA-NC-A5HQ-01 6 165829753 165829753 C T PDE10A Missense_Mutation p.G339R 0.19 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HQ-01 6 165848759 165848759 G T PDE10A Missense_Mutation p.S168Y 0.22 deleterious(0) benign(0.035) TCGA-NC-A5HQ-01 6 25661795 25661795 G A SCGN Missense_Mutation p.A57T 0.28 tolerated(0.38) benign(0.001) TCGA-NC-A5HQ-01 6 25701569 25701569 G T SCGN 3'UTR 0.15 TCGA-NC-A5HQ-01 6 26217565 26217565 G A HIST1H2AE Silent p.T121T 0.22 TCGA-NC-A5HQ-01 6 26235119 26235119 C A HIST1H1D Missense_Mutation p.A15S 0.20 tolerated(0.4) unknown(0) TCGA-NC-A5HQ-01 6 26509191 26509191 G T BTN1A1 Missense_Mutation p.R457L 0.27 tolerated(0.21) possibly_damaging(0.854) TCGA-NC-A5HQ-01 6 28297488 28297488 C T ZSCAN31 5'UTR 0.18 TCGA-NC-A5HQ-01 6 31515488 31515488 C T NFKBIL1 Missense_Mutation p.P6L 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-NC-A5HQ-01 6 38560396 38560396 C G BTBD9 Missense_Mutation p.R257P 0.27 deleterious(0.01) unknown(0) TCGA-NC-A5HQ-01 6 38821057 38821057 C A DNAH8 Silent p.S1672S 0.26 TCGA-NC-A5HQ-01 6 39856481 39856481 G A DAAM2 Missense_Mutation p.R696Q 0.24 tolerated(0.41) possibly_damaging(0.879) TCGA-NC-A5HQ-01 6 45870661 45870661 C A CLIC5 3'UTR 0.33 TCGA-NC-A5HQ-01 6 49928106 49928106 T C DEFB114 Missense_Mutation p.K37E 0.18 deleterious_low_confidence(0.03) benign(0.099) TCGA-NC-A5HQ-01 6 55443757 55443757 C G HMGCLL1 Missense_Mutation p.D33H 0.13 deleterious_low_confidence(0.04) benign(0.002) TCGA-NC-A5HQ-01 6 75899344 75899344 T C COL12A1 Silent p.L194L 0.21 TCGA-NC-A5HQ-01 6 8080224 8080224 C T EEF1E1 Missense_Mutation p.V142M 0.21 deleterious(0.02) probably_damaging(0.993) TCGA-NC-A5HQ-01 6 87797927 87797927 T C CGA Splice_Site 0.29 TCGA-NC-A5HQ-01 6 97613184 97613184 C G MMS22L Missense_Mutation p.L1053F 0.04 deleterious(0.04) possibly_damaging(0.696) TCGA-NC-A5HQ-01 7 100552476 100552476 C A MUC3A Silent p.P409P 0.25 TCGA-NC-A5HQ-01 7 101183252 101183252 T A COL26A1 Missense_Mutation p.W176R 0.31 deleterious(0.04) benign(0.292) TCGA-NC-A5HQ-01 7 101187329 101187329 A G COL26A1 Missense_Mutation p.K219E 0.30 deleterious(0.02) probably_damaging(0.998) TCGA-NC-A5HQ-01 7 11501736 11501736 C A THSD7A Silent p.R801R 0.17 TCGA-NC-A5HQ-01 7 11501737 11501737 C A THSD7A Missense_Mutation p.R801L 0.17 deleterious(0) probably_damaging(0.982) TCGA-NC-A5HQ-01 7 131878926 131878926 C G PLXNA4 Missense_Mutation p.E917D 0.36 tolerated(0.2) probably_damaging(0.917) TCGA-NC-A5HQ-01 7 1608765 1608765 C A PSMG3 Missense_Mutation p.D71Y 0.09 deleterious(0) probably_damaging(0.993) TCGA-NC-A5HQ-01 7 37947038 37947038 C A SFRP4 3'UTR 0.17 TCGA-NC-A5HQ-01 7 43351378 43351378 G A HECW1 Missense_Mutation p.R15K 0.15 deleterious_low_confidence(0) possibly_damaging(0.559) TCGA-NC-A5HQ-01 7 48378008 48378008 T C ABCA13 Missense_Mutation p.L3387S 0.29 probably_damaging(1) TCGA-NC-A5HQ-01 7 5104784 5104784 C T RBAK Missense_Mutation p.P566L 0.16 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HQ-01 7 53103412 53103412 G T POM121L12 Missense_Mutation p.W16C 0.19 deleterious_low_confidence(0.01) benign(0) TCGA-NC-A5HQ-01 7 57187906 57187906 C T ZNF479 Missense_Mutation p.E406K 0.27 deleterious(0.03) probably_damaging(0.997) TCGA-NC-A5HQ-01 7 66103988 66103988 G T KCTD7 Missense_Mutation p.E213D 0.31 tolerated(0.35) possibly_damaging(0.88) TCGA-NC-A5HQ-01 7 73008599 73008599 C T MLXIPL Intron 0.23 TCGA-NC-A5HQ-01 7 75877526 75877526 G A SRRM3 Missense_Mutation p.R85Q 0.49 tolerated(0.08) unknown(0) TCGA-NC-A5HQ-01 7 80303476 80303477 - A CD36 3'UTR 0.18 TCGA-NC-A5HQ-01 7 83014671 83014671 C G SEMA3E Missense_Mutation p.R605P 0.24 deleterious(0.02) probably_damaging(0.963) TCGA-NC-A5HQ-01 7 83036512 83036512 G T SEMA3E Missense_Mutation p.D238E 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-NC-A5HQ-01 7 88964781 88964781 G A ZNF804B Missense_Mutation p.D829N 0.19 tolerated(0.19) possibly_damaging(0.743) TCGA-NC-A5HQ-01 7 94051236 94051236 C T COL1A2 Missense_Mutation p.A792V 0.36 unknown(0) TCGA-NC-A5HQ-01 8 104922628 104922628 G A RIMS2 Intron 0.21 TCGA-NC-A5HQ-01 8 110457417 110457417 G C PKHD1L1 Silent p.G1773G 0.17 TCGA-NC-A5HQ-01 8 113304802 113304802 T A CSMD3 Missense_Mutation p.N2918Y 0.28 deleterious(0) benign(0.201) TCGA-NC-A5HQ-01 8 113662518 113662518 T C CSMD3 Missense_Mutation p.Y1022C 0.13 deleterious(0.02) probably_damaging(0.95) TCGA-NC-A5HQ-01 8 139151306 139151306 C G FAM135B Missense_Mutation p.G1275A 0.08 deleterious(0) probably_damaging(0.958) TCGA-NC-A5HQ-01 8 139164783 139164783 A G FAM135B Silent p.S645S 0.15 TCGA-NC-A5HQ-01 8 139164908 139164908 C T FAM135B Missense_Mutation p.A604T 0.12 tolerated(0.33) benign(0.001) TCGA-NC-A5HQ-01 8 139180140 139180140 G C FAM135B Missense_Mutation p.T419R 0.13 tolerated(0.3) benign(0.051) TCGA-NC-A5HQ-01 8 139190920 139190920 G T FAM135B Missense_Mutation p.P296Q 0.08 deleterious(0.01) probably_damaging(0.943) TCGA-NC-A5HQ-01 8 139263238 139263238 C A FAM135B Missense_Mutation p.A130S 0.33 deleterious(0.01) benign(0.158) TCGA-NC-A5HQ-01 8 145139401 145139401 G T GPAA1 Missense_Mutation p.G300V 0.29 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HQ-01 8 23540174 23540174 T A NKX3-1 Missense_Mutation p.S77C 0.38 deleterious(0.01) possibly_damaging(0.533) TCGA-NC-A5HQ-01 8 2910161 2910161 A G CSMD1 Missense_Mutation p.C2495R 0.32 probably_damaging(0.999) TCGA-NC-A5HQ-01 8 48614566 48614567 - A SPIDR Frame_Shift_Ins p.P658Tfs*50 0.12 TCGA-NC-A5HQ-01 8 53454981 53454981 A G FAM150A Missense_Mutation p.L72S 0.34 deleterious(0.03) probably_damaging(0.991) TCGA-NC-A5HQ-01 8 68004068 68004068 C T CSPP1 Intron 0.14 TCGA-NC-A5HQ-01 8 72127899 72127899 G A EYA1 Silent p.T475T 0.23 TCGA-NC-A5HQ-01 8 81555349 81555349 G A ZNF704 Missense_Mutation p.H350Y 0.37 tolerated(0.08) benign(0.169) TCGA-NC-A5HQ-01 8 85774670 85774670 G A RALYL Missense_Mutation p.G198R 0.29 tolerated(0.36) benign(0.039) TCGA-NC-A5HQ-01 8 86171715 86171715 G A CA13 Missense_Mutation p.A101T 0.17 tolerated(0.56) benign(0) TCGA-NC-A5HQ-01 8 90993066 90993066 T C NBN Missense_Mutation p.T126A 0.14 tolerated(0.2) benign(0.003) TCGA-NC-A5HQ-01 9 101589132 101589132 C A GALNT12 Missense_Mutation p.L214M 0.36 deleterious(0.02) probably_damaging(0.991) TCGA-NC-A5HQ-01 9 117138985 117138985 C - AKNA Frame_Shift_Del p.V368* 0.31 TCGA-NC-A5HQ-01 9 132597018 132597018 T A C9orf78 Silent p.V37V 0.60 TCGA-NC-A5HQ-01 9 138714899 138714899 C T CAMSAP1 Silent p.E536E 0.44 TCGA-NC-A5HQ-01 9 140685350 140685350 G A EHMT1 Missense_Mutation p.M811I 0.48 deleterious(0.02) possibly_damaging(0.739) TCGA-NC-A5HQ-01 9 16436794 16436794 C A BNC2 Missense_Mutation p.K466N 0.43 deleterious(0) probably_damaging(0.995) TCGA-NC-A5HQ-01 9 3879514 3879514 G T GLIS3 Missense_Mutation p.P737H 0.65 tolerated(0.08) probably_damaging(0.999) TCGA-NC-A5HQ-01 9 71395711 71395711 G T FAM122A Nonsense_Mutation p.E211* 0.52 TCGA-NC-A5HQ-01 9 71866253 71866253 G T TJP2 Missense_Mutation p.Q1129H 0.35 tolerated(0.13) benign(0.059) TCGA-NC-A5HQ-01 X 101138688 101138688 C G ZMAT1 Missense_Mutation p.D571H 0.63 tolerated(0.1) benign(0.035) TCGA-NC-A5HQ-01 X 110653494 110653494 C A DCX Missense_Mutation p.A126S 0.58 tolerated(0.25) benign(0.024) TCGA-NC-A5HQ-01 X 11206894 11206894 G A ARHGAP6 Missense_Mutation p.S344L 0.68 tolerated(0.18) benign(0.018) TCGA-NC-A5HQ-01 X 134989110 134989110 T C SAGE1 Silent p.P254P 0.64 TCGA-NC-A5HQ-01 X 139586666 139586666 G T SOX3 Missense_Mutation p.P187Q 0.62 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HQ-01 X 140953391 140953391 G T MAGEC3 Missense_Mutation p.K86N 0.52 deleterious_low_confidence(0) benign(0.403) TCGA-NC-A5HQ-01 X 140994507 140994507 C A MAGEC1 Silent p.P439P 0.61 TCGA-NC-A5HQ-01 X 140996205 140996205 T C MAGEC1 Silent p.S1005S 0.66 TCGA-NC-A5HQ-01 X 144904765 144904765 G C SLITRK2 Missense_Mutation p.R274S 0.67 tolerated(0.23) benign(0.158) TCGA-NC-A5HQ-01 X 148797289 148797289 A G MAGEA11 Missense_Mutation p.E73G 0.60 deleterious_low_confidence(0) benign(0.403) TCGA-NC-A5HQ-01 X 150154641 150154641 C A HMGB3 Missense_Mutation p.P90T 0.77 deleterious(0.01) possibly_damaging(0.576) TCGA-NC-A5HQ-01 X 154176146 154176146 G A F8 Missense_Mutation p.S647L 0.51 tolerated(0.05) benign(0.206) TCGA-NC-A5HQ-01 X 21675960 21675960 C A KLHL34 5'UTR 0.67 TCGA-NC-A5HQ-01 X 2838670 2838670 C T ARSD Silent p.Q137Q 0.43 TCGA-NC-A5HQ-01 X 86868976 86868976 G T KLHL4 Missense_Mutation p.E173D 0.56 tolerated(0.11) possibly_damaging(0.492) TCGA-NC-A5HR-01 10 105944797 105944797 G A WDR96 Silent p.G706G 0.05 TCGA-NC-A5HR-01 10 26822454 26822454 G C APBB1IP Missense_Mutation p.E300D 0.12 deleterious(0.02) probably_damaging(0.952) TCGA-NC-A5HR-01 10 31137986 31137986 G A ZNF438 Silent p.L450L 0.41 TCGA-NC-A5HR-01 10 50532315 50532315 C A C10orf71 Missense_Mutation p.D575E 0.24 tolerated(0.11) benign(0.227) TCGA-NC-A5HR-01 10 50854697 50854697 C T CHAT Missense_Mutation p.R420C 0.19 deleterious(0) probably_damaging(1) TCGA-NC-A5HR-01 10 55943254 55943254 A T PCDH15 Missense_Mutation p.Y514N 0.39 deleterious(0.02) probably_damaging(1) TCGA-NC-A5HR-01 10 58117806 58117806 C A ZWINT 3'UTR 0.62 TCGA-NC-A5HR-01 10 68139105 68139105 G T CTNNA3 Missense_Mutation p.H513N 0.09 deleterious(0) unknown(0) TCGA-NC-A5HR-01 10 95719179 95719179 G C PIPSL RNA 0.35 TCGA-NC-A5HR-01 11 101953935 101953935 C A C11orf70 3'UTR 0.27 TCGA-NC-A5HR-01 11 118347540 118347540 A G KMT2A Silent p.S1059S 0.27 TCGA-NC-A5HR-01 11 121986223 121986223 G T BLID 3'UTR 0.48 TCGA-NC-A5HR-01 11 122659938 122659938 T A UBASH3B Nonsense_Mutation p.L301* 0.26 TCGA-NC-A5HR-01 11 123624382 123624382 A G OR6X1 Missense_Mutation p.L282P 0.36 deleterious(0) possibly_damaging(0.896) TCGA-NC-A5HR-01 11 123814079 123814079 A C OR6T1 Missense_Mutation p.V156G 0.26 deleterious(0) possibly_damaging(0.878) TCGA-NC-A5HR-01 11 123847403 123847403 C G OR10S1 Nonstop_Mutation p.*332Yext*? 0.35 TCGA-NC-A5HR-01 11 124481522 124481522 C T PANX3 Missense_Mutation p.R24C 0.23 deleterious(0) benign(0.003) TCGA-NC-A5HR-01 11 125513686 125513686 G A CHEK1 Splice_Site p.X272_splice 0.29 TCGA-NC-A5HR-01 11 27384668 27384668 C G CCDC34 Missense_Mutation p.R25T 0.31 tolerated_low_confidence(0.48) benign(0.026) TCGA-NC-A5HR-01 11 30938437 30938437 C T DCDC1 Silent p.V1144V 0.38 TCGA-NC-A5HR-01 11 49831837 49831837 T G RP11-707M1.1 RNA 0.46 TCGA-NC-A5HR-01 11 49974782 49974782 G T OR4C13 Missense_Mutation p.A270S 0.39 tolerated_low_confidence(0.07) benign(0.258) TCGA-NC-A5HR-01 11 50003312 50003312 G T OR4C12 Silent p.I242I 0.44 TCGA-NC-A5HR-01 11 50003939 50003939 G T OR4C12 Nonsense_Mutation p.Y33* 0.38 TCGA-NC-A5HR-01 11 5372897 5372897 C A OR51B6 Missense_Mutation p.H54N 0.34 deleterious(0) possibly_damaging(0.842) TCGA-NC-A5HR-01 11 55563534 55563534 T G OR5D14 Nonsense_Mutation p.L168* 0.29 TCGA-NC-A5HR-01 11 56043762 56043762 C A OR5T1 Silent p.G216G 0.24 TCGA-NC-A5HR-01 11 56431292 56431292 G A OR5AR1 Missense_Mutation p.G44D 0.27 deleterious(0) probably_damaging(0.989) TCGA-NC-A5HR-01 11 56949887 56949887 G A LRRC55 Missense_Mutation p.D174N 0.11 tolerated(0.42) benign(0.007) TCGA-NC-A5HR-01 11 5799776 5799776 C A OR52N5 Missense_Mutation p.R30I 0.46 tolerated(0.17) benign(0.027) TCGA-NC-A5HR-01 11 58723557 58723557 C A GLYATL1 3'UTR 0.33 TCGA-NC-A5HR-01 11 59224572 59224572 G A OR4D6 Missense_Mutation p.V47I 0.28 tolerated(0.16) benign(0.003) TCGA-NC-A5HR-01 11 59939639 59939639 T A MS4A6A 3'Flank 0.11 TCGA-NC-A5HR-01 11 61183865 61183865 T C CPSF7 Missense_Mutation p.N269S 0.35 tolerated(0.88) benign(0.003) TCGA-NC-A5HR-01 11 6261700 6261700 A T CNGA4 Missense_Mutation p.T226S 0.45 deleterious(0) probably_damaging(0.942) TCGA-NC-A5HR-01 11 62985106 62985106 C A SLC22A25 Missense_Mutation p.R203L 0.36 deleterious(0.01) probably_damaging(0.976) TCGA-NC-A5HR-01 11 64374973 64374973 C T NRXN2 Missense_Mutation p.A1612T 0.35 deleterious_low_confidence(0.02) benign(0.063) TCGA-NC-A5HR-01 11 65315167 65315167 A G LTBP3 Missense_Mutation p.C658R 0.21 deleterious(0.01) benign(0.015) TCGA-NC-A5HR-01 11 72005713 72005713 A T CLPB Missense_Mutation p.I534N 0.28 deleterious(0.01) probably_damaging(0.972) TCGA-NC-A5HR-01 11 7690550 7690550 C T CYB5R2 Missense_Mutation p.V92I 0.24 deleterious(0.03) benign(0.015) TCGA-NC-A5HR-01 11 88961094 88961094 T C TYR Silent p.S380S 0.33 TCGA-NC-A5HR-01 11 89431688 89431688 G T FOLH1B RNA 0.25 TCGA-NC-A5HR-01 12 100784835 100784835 C T SLC17A8 Silent p.F137F 0.27 TCGA-NC-A5HR-01 12 100784872 100784872 A T SLC17A8 Missense_Mutation p.I150F 0.28 deleterious(0.03) benign(0.168) TCGA-NC-A5HR-01 12 102158219 102158219 T C GNPTAB Missense_Mutation p.I826V 0.26 tolerated(0.5) benign(0) TCGA-NC-A5HR-01 12 105199115 105199115 C A SLC41A2 Missense_Mutation p.V513L 0.31 deleterious(0) possibly_damaging(0.899) TCGA-NC-A5HR-01 12 105199116 105199116 C A SLC41A2 Splice_Site p.X513_splice 0.30 TCGA-NC-A5HR-01 12 107126707 107126707 G A RFX4 Missense_Mutation p.V502I 0.28 tolerated(0.43) benign(0.001) TCGA-NC-A5HR-01 12 10777371 10777371 C A STYK1 Nonsense_Mutation p.G269* 0.31 TCGA-NC-A5HR-01 12 108685520 108685520 T C CMKLR1 3'UTR 0.42 TCGA-NC-A5HR-01 12 109639456 109639456 G A ACACB Missense_Mutation p.G955S 0.36 deleterious(0) probably_damaging(0.98) TCGA-NC-A5HR-01 12 111099169 111099169 G C HVCN1 Missense_Mutation p.H36D 0.29 tolerated(0.18) benign(0.093) TCGA-NC-A5HR-01 12 111296572 111296572 A G CCDC63 Missense_Mutation p.D121G 0.42 deleterious(0.01) probably_damaging(0.939) TCGA-NC-A5HR-01 12 112654681 112654681 G C HECTD4 Missense_Mutation p.D2281E 0.25 benign(0.203) TCGA-NC-A5HR-01 12 113306289 113306289 C A RPH3A Missense_Mutation p.P167T 0.28 deleterious(0) probably_damaging(0.994) TCGA-NC-A5HR-01 12 13065054 13065054 A T GPRC5A Missense_Mutation p.Y320F 0.33 deleterious(0.02) probably_damaging(0.969) TCGA-NC-A5HR-01 12 15132129 15132129 C A PDE6H Missense_Mutation p.P51T 0.24 deleterious_low_confidence(0) possibly_damaging(0.898) TCGA-NC-A5HR-01 12 15132130 15132130 C A PDE6H Missense_Mutation p.P51Q 0.23 deleterious_low_confidence(0) possibly_damaging(0.906) TCGA-NC-A5HR-01 12 20893235 20893235 G A SLCO1C1 Missense_Mutation p.V556I 0.28 tolerated(0.79) benign(0.068) TCGA-NC-A5HR-01 12 29597164 29597164 C A OVCH1 Missense_Mutation p.E977D 0.31 deleterious(0.03) probably_damaging(0.915) TCGA-NC-A5HR-01 12 31586167 31586167 C A DENND5B Silent p.R676R 0.32 TCGA-NC-A5HR-01 12 40757329 40757329 G A LRRK2 Missense_Mutation p.G2385E 0.32 tolerated(1) benign(0) TCGA-NC-A5HR-01 12 55025559 55025559 C A LACRT Missense_Mutation p.M106I 0.34 tolerated_low_confidence(0.49) benign(0.043) TCGA-NC-A5HR-01 12 64587904 64587904 C T C12orf66 Silent p.L352L 0.31 TCGA-NC-A5HR-01 12 7473353 7473353 C A ACSM4 Nonsense_Mutation p.C318* 0.29 TCGA-NC-A5HR-01 12 81112211 81112211 T C MYF5 Silent p.N192N 0.34 TCGA-NC-A5HR-01 12 9090574 9090574 T G PHC1 Missense_Mutation p.H926Q 0.27 tolerated(0.54) unknown(0) TCGA-NC-A5HR-01 12 9095094 9095094 T A M6PR Missense_Mutation p.Y210F 0.31 deleterious(0.02) possibly_damaging(0.541) TCGA-NC-A5HR-01 13 100764120 100764120 A G PCCA Missense_Mutation p.N70S 0.19 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HR-01 13 102379131 102379131 T C FGF14 Silent p.K151K 0.45 TCGA-NC-A5HR-01 13 103710646 103710646 G T SLC10A2 Missense_Mutation p.S155Y 0.41 deleterious(0.03) benign(0.033) TCGA-NC-A5HR-01 13 109496719 109496719 C A MYO16 Missense_Mutation p.Q354K 0.19 tolerated(0.06) benign(0.016) TCGA-NC-A5HR-01 13 28602399 28602399 C G FLT3 Missense_Mutation p.A657P 0.29 deleterious(0) probably_damaging(1) TCGA-NC-A5HR-01 13 32907105 32907105 C T BRCA2 Missense_Mutation p.S497L 0.30 tolerated(0.31) benign(0.002) TCGA-NC-A5HR-01 13 35782883 35782883 G T NBEA Missense_Mutation p.V1805L 0.18 tolerated(0.11) benign(0.051) TCGA-NC-A5HR-01 13 36385077 36385077 G A DCLK1 Missense_Mutation p.S528L 0.18 tolerated(0.12) possibly_damaging(0.504) TCGA-NC-A5HR-01 13 38237590 38237590 C A TRPC4 Missense_Mutation p.G551C 0.30 deleterious(0) probably_damaging(0.996) TCGA-NC-A5HR-01 13 70681661 70681661 G - KLHL1 Frame_Shift_Del p.S59Afs*7 0.25 TCGA-NC-A5HR-01 14 21838582 21838582 C T SUPT16H Silent p.K132K 0.28 TCGA-NC-A5HR-01 14 23902827 23902827 C A MYH7 Missense_Mutation p.V39L 0.23 deleterious(0.02) benign(0.352) TCGA-NC-A5HR-01 14 29237233 29237233 G T FOXG1 Missense_Mutation p.G250C 0.23 deleterious(0) probably_damaging(1) TCGA-NC-A5HR-01 14 32315779 32315779 C A NUBPL Missense_Mutation p.L266I 0.35 tolerated(0.11) benign(0.094) TCGA-NC-A5HR-01 14 37132535 37132535 C G PAX9 Missense_Mutation p.H146Q 0.33 tolerated(0.21) probably_damaging(0.986) TCGA-NC-A5HR-01 14 47426629 47426629 G C MDGA2 Missense_Mutation p.N679K 0.26 tolerated(0.4) benign(0.112) TCGA-NC-A5HR-01 14 50088971 50088971 C T MGAT2 Nonsense_Mutation p.Q329* 0.28 TCGA-NC-A5HR-01 14 52735162 52735162 G T PTGDR Silent p.L210L 0.22 TCGA-NC-A5HR-01 14 58048019 58048019 C T SLC35F4 Silent p.T276T 0.21 TCGA-NC-A5HR-01 14 64518633 64518633 T C SYNE2 Silent p.L2668L 0.34 TCGA-NC-A5HR-01 14 64989393 64989393 C G ZBTB1 Missense_Mutation p.R391G 0.20 tolerated(0.44) benign(0.128) TCGA-NC-A5HR-01 14 68331858 68331858 T C RAD51B Splice_Site p.X151_splice 0.28 TCGA-NC-A5HR-01 14 76232700 76232700 T G TTLL5 Missense_Mutation p.N668K 0.34 deleterious(0.03) benign(0.15) TCGA-NC-A5HR-01 14 86087870 86087870 G T FLRT2 Missense_Mutation p.Q4H 0.30 tolerated_low_confidence(0.47) benign(0.174) TCGA-NC-A5HR-01 14 86089505 86089505 C A FLRT2 Silent p.G549G 0.20 TCGA-NC-A5HR-01 14 95030158 95030158 T C SERPINA4 Silent p.S113S 0.31 TCGA-NC-A5HR-01 14 95030159 95030159 G T SERPINA4 Nonsense_Mutation p.E114* 0.30 TCGA-NC-A5HR-01 15 22369111 22369111 G C OR4M2 Missense_Mutation p.C179S 0.10 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HR-01 15 24922351 24922357 CCACACC ACACA NPAP1 Frame_Shift_Del p.T446Nfs*6 0.24 TCGA-NC-A5HR-01 15 25322100 25322100 C G SNORD116-9 3'Flank 0.33 TCGA-NC-A5HR-01 15 27184610 27184610 G T GABRA5 Intron 0.45 TCGA-NC-A5HR-01 15 30663329 30663329 G A CHRFAM7A Silent p.P194P 0.17 TCGA-NC-A5HR-01 15 31294527 31294527 G T TRPM1 Missense_Mutation p.S1476Y 0.33 deleterious_low_confidence(0) benign(0.063) TCGA-NC-A5HR-01 15 42379542 42379542 C A PLA2G4D Missense_Mutation p.V71L 0.31 deleterious(0.01) benign(0.417) TCGA-NC-A5HR-01 15 50288889 50288889 G C ATP8B4 Missense_Mutation p.L192V 0.06 deleterious(0.03) benign(0.429) TCGA-NC-A5HR-01 15 68609644 68609644 C T ITGA11 Missense_Mutation p.V892I 0.28 tolerated(0.48) benign(0.006) TCGA-NC-A5HR-01 15 75983018 75983018 T G CSPG4 Missense_Mutation p.N130H 0.24 deleterious(0.01) probably_damaging(0.992) TCGA-NC-A5HR-01 15 89414621 89414621 G A ACAN Missense_Mutation p.V2319I 0.30 tolerated(0.52) possibly_damaging(0.688) TCGA-NC-A5HR-01 15 91512686 91512686 A G PRC1 Silent p.S580S 0.23 TCGA-NC-A5HR-01 15 97328277 97328277 C T SPATA8 Missense_Mutation p.P83L 0.31 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-NC-A5HR-01 16 1748881 1748881 A T HN1L Missense_Mutation p.K152M 0.20 deleterious(0.04) benign(0.046) TCGA-NC-A5HR-01 16 20043449 20043449 C G GPR139 Missense_Mutation p.G224R 0.26 deleterious(0) probably_damaging(1) TCGA-NC-A5HR-01 16 21222840 21222840 C T ZP2 Nonsense_Mutation p.W10* 0.26 TCGA-NC-A5HR-01 16 23546234 23546234 G T EARS2 Silent p.I311I 0.24 TCGA-NC-A5HR-01 16 24919351 24919351 G A SLC5A11 Missense_Mutation p.G445S 0.26 deleterious(0.02) probably_damaging(0.985) TCGA-NC-A5HR-01 16 31475811 31475811 C G ARMC5 Silent p.A489A 0.18 TCGA-NC-A5HR-01 16 51171278 51171278 C A SALL1 Silent p.A1240A 0.52 TCGA-NC-A5HR-01 16 53404101 53404101 A T RP11-44F14.1 RNA 0.44 TCGA-NC-A5HR-01 16 70400625 70400625 T C DDX19A Missense_Mutation p.I294T 0.54 deleterious(0) benign(0.43) TCGA-NC-A5HR-01 16 81324203 81324203 G C BCMO1 3'UTR 0.43 TCGA-NC-A5HR-01 16 8891483 8891483 C A TMEM186 5'UTR 0.29 TCGA-NC-A5HR-01 16 97419 97419 C A POLR3K 3'UTR 0.28 TCGA-NC-A5HR-01 16 97420 97420 C T POLR3K 3'UTR 0.28 TCGA-NC-A5HR-01 17 15983296 15983296 T A NCOR1 Silent p.L1161L 0.44 TCGA-NC-A5HR-01 17 15983299 15983299 G A NCOR1 Silent p.S1160S 0.44 TCGA-NC-A5HR-01 17 17250117 17250117 A T NT5M Splice_Site p.X182_splice 0.29 TCGA-NC-A5HR-01 17 18544646 18544646 G T TBC1D28 Missense_Mutation p.P7Q 0.57 tolerated(0.07) possibly_damaging(0.683) TCGA-NC-A5HR-01 17 33267623 33267623 G A CCT6B Silent p.S301S 0.25 TCGA-NC-A5HR-01 17 34062104 34062104 G C RASL10B 5'UTR 0.40 TCGA-NC-A5HR-01 17 35930873 35930873 C A SYNRG Missense_Mutation p.V404L 0.30 tolerated(0.69) benign(0.167) TCGA-NC-A5HR-01 17 38640793 38640793 A G TNS4 Missense_Mutation p.S482P 0.39 deleterious(0) probably_damaging(0.984) TCGA-NC-A5HR-01 17 39506735 39506735 C A KRT33A Missense_Mutation p.Q95H 0.10 tolerated(0.13) benign(0.337) TCGA-NC-A5HR-01 17 42330612 42330612 C T SLC4A1 Missense_Mutation p.V729M 0.32 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HR-01 17 44061124 44061124 G A MAPT Silent p.S318S 0.44 TCGA-NC-A5HR-01 17 72367944 72367944 G C GPR142 Silent p.A198A 0.29 TCGA-NC-A5HR-01 17 73727999 73727999 C A ITGB4 Missense_Mutation p.S441Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HR-01 17 7411572 7411572 G A POLR2A Silent p.A1081A 0.07 TCGA-NC-A5HR-01 17 7578454 7578461 GCGCGGAC - TP53 Frame_Shift_Del p.V157Hfs*21 0.57 TCGA-NC-A5HR-01 17 79943435 79943435 G T ASPSCR1 Missense_Mutation p.C109F 0.33 tolerated(0.38) unknown(0) TCGA-NC-A5HR-01 17 80279944 80279944 G T SECTM1 3'UTR 0.20 TCGA-NC-A5HR-01 18 29706707 29706707 A T RNF138 Nonsense_Mutation p.R205* 0.37 TCGA-NC-A5HR-01 18 31463319 31463319 C A NOL4 Missense_Mutation p.V538F 0.42 tolerated(0.63) benign(0.438) TCGA-NC-A5HR-01 18 45556282 45556282 C A ZBTB7C Missense_Mutation p.R403S 0.61 deleterious(0.01) probably_damaging(0.993) TCGA-NC-A5HR-01 18 5394756 5394756 G T EPB41L3 Missense_Mutation p.H1064N 0.11 deleterious(0) probably_damaging(0.934) TCGA-NC-A5HR-01 18 6213149 6213149 T A L3MBTL4 Missense_Mutation p.K327M 0.36 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HR-01 18 63430087 63430087 G T CDH7 Missense_Mutation p.L3F 0.54 tolerated_low_confidence(0.1) benign(0) TCGA-NC-A5HR-01 18 63547748 63547748 G T CDH7 Missense_Mutation p.G659V 0.43 deleterious(0) probably_damaging(0.996) TCGA-NC-A5HR-01 18 70209246 70209246 C A CBLN2 Silent p.R50R 0.40 TCGA-NC-A5HR-01 19 12577647 12577647 C A ZNF709 Missense_Mutation p.E7D 0.22 tolerated(0.13) possibly_damaging(0.683) TCGA-NC-A5HR-01 19 1615644 1615644 G C TCF3 Intron 0.23 TCGA-NC-A5HR-01 19 17780421 17780421 C A UNC13A Missense_Mutation p.G112V 0.26 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-NC-A5HR-01 19 1805937 1805937 G T ATP8B3 Silent p.A257A 0.47 TCGA-NC-A5HR-01 19 18468205 18468205 G C PGPEP1 Missense_Mutation p.V73L 0.41 deleterious(0.02) benign(0.296) TCGA-NC-A5HR-01 19 18684208 18684208 A C UBA52 Missense_Mutation p.K33T 0.22 deleterious(0.02) benign(0.207) TCGA-NC-A5HR-01 19 19655770 19655770 A G CILP2 Missense_Mutation p.T806A 0.18 deleterious(0.03) possibly_damaging(0.837) TCGA-NC-A5HR-01 19 30934851 30934851 C A ZNF536 Missense_Mutation p.R128S 0.13 deleterious(0.04) probably_damaging(0.994) TCGA-NC-A5HR-01 19 30935401 30935401 A T ZNF536 Missense_Mutation p.Q311L 0.13 tolerated(0.1) probably_damaging(0.994) TCGA-NC-A5HR-01 19 33702425 33702425 G C SLC7A10 Missense_Mutation p.I269M 0.16 deleterious(0) probably_damaging(0.995) TCGA-NC-A5HR-01 19 35175725 35175725 A T ZNF302 Missense_Mutation p.E261D 0.16 tolerated(0.33) benign(0.015) TCGA-NC-A5HR-01 19 35800875 35800875 T - MAG Frame_Shift_Del p.F444Lfs*8 0.14 TCGA-NC-A5HR-01 19 36034643 36034643 C A GAPDHS Missense_Mutation p.P324T 0.67 deleterious_low_confidence(0.01) benign(0.171) TCGA-NC-A5HR-01 19 37854518 37854518 T C HKR1 Silent p.H607H 0.61 TCGA-NC-A5HR-01 19 39334648 39334648 C G HNRNPL Missense_Mutation p.K269N 0.06 deleterious(0) probably_damaging(0.991) TCGA-NC-A5HR-01 19 4233284 4233284 C A EBI3 Missense_Mutation p.P120H 0.23 deleterious(0.02) probably_damaging(0.927) TCGA-NC-A5HR-01 19 43697375 43697375 T A PSG4 3'UTR 0.17 TCGA-NC-A5HR-01 19 43857839 43857839 G A CD177 5'Flank 0.56 TCGA-NC-A5HR-01 19 51379821 51379821 C A KLK2 Silent p.L100L 0.42 TCGA-NC-A5HR-01 19 51885739 51885739 G A LIM2 Silent p.F128F 0.38 TCGA-NC-A5HR-01 19 52004587 52004587 T C SIGLEC12 Missense_Mutation p.Y134C 0.49 tolerated(0.18) possibly_damaging(0.877) TCGA-NC-A5HR-01 19 53015534 53015534 C A ZNF578 3'Flank 0.49 TCGA-NC-A5HR-01 19 7570850 7570850 C T C19orf45 Missense_Mutation p.P336S 0.27 tolerated(0.07) benign(0.409) TCGA-NC-A5HR-01 1 100133197 100133198 - A PALMD Frame_Shift_Ins p.A45Gfs*42 0.30 TCGA-NC-A5HR-01 1 107867074 107867074 C G NTNG1 Missense_Mutation p.S139R 0.43 deleterious(0) possibly_damaging(0.56) TCGA-NC-A5HR-01 1 109553863 109553863 C A WDR47 Missense_Mutation p.V276F 0.47 deleterious(0.05) benign(0.403) TCGA-NC-A5HR-01 1 110591832 110591832 A T STRIP1 Missense_Mutation p.K587M 0.54 deleterious(0) probably_damaging(0.923) TCGA-NC-A5HR-01 1 113471903 113471903 C A SLC16A1 Nonsense_Mutation p.G10* 0.63 TCGA-NC-A5HR-01 1 13669123 13669123 C T PRAMEF14 Missense_Mutation p.G403R 0.44 tolerated(0.47) benign(0.004) TCGA-NC-A5HR-01 1 153903483 153903483 C T DENND4B Missense_Mutation p.D1352N 0.59 deleterious(0) probably_damaging(0.989) TCGA-NC-A5HR-01 1 154474082 154474082 T A SHE Missense_Mutation p.S141C 0.16 deleterious(0.04) benign(0.023) TCGA-NC-A5HR-01 1 154558258 154558258 G T ADAR Silent p.R1096R 0.55 TCGA-NC-A5HR-01 1 154917564 154917564 C T PBXIP1 Missense_Mutation p.S711N 0.10 tolerated(0.48) benign(0.006) TCGA-NC-A5HR-01 1 158326217 158326217 T C CD1E Intron 0.50 TCGA-NC-A5HR-01 1 158639507 158639507 G C SPTA1 Missense_Mutation p.R557G 0.42 deleterious(0) probably_damaging(1) TCGA-NC-A5HR-01 1 159900568 159900568 G A IGSF9 Missense_Mutation p.P576L 0.51 deleterious(0) possibly_damaging(0.861) TCGA-NC-A5HR-01 1 165182901 165182901 C T LMX1A Missense_Mutation p.V216I 0.22 deleterious(0.04) possibly_damaging(0.883) TCGA-NC-A5HR-01 1 169390827 169390827 T A CCDC181 Missense_Mutation p.H281L 0.45 tolerated(0.67) benign(0.002) TCGA-NC-A5HR-01 1 169510349 169510349 G T F5 Missense_Mutation p.H1327N 0.49 deleterious_low_confidence(0) benign(0.015) TCGA-NC-A5HR-01 1 175372400 175372400 C T TNR Silent p.E284E 0.47 TCGA-NC-A5HR-01 1 176564418 176564418 C G PAPPA2 Missense_Mutation p.R560G 0.25 tolerated(0.17) benign(0.441) TCGA-NC-A5HR-01 1 185240512 185240512 C G SWT1 Missense_Mutation p.I833M 0.20 tolerated(0.07) possibly_damaging(0.885) TCGA-NC-A5HR-01 1 196716514 196716514 G T CFH 3'UTR 0.58 TCGA-NC-A5HR-01 1 196883731 196883731 C T CFHR4 Silent p.I428I 0.14 TCGA-NC-A5HR-01 1 196920153 196920153 C A CFHR2 Missense_Mutation p.S142Y 0.23 tolerated(0.06) benign(0.084) TCGA-NC-A5HR-01 1 197168519 197168519 T C ZBTB41 Missense_Mutation p.Q362R 0.47 tolerated(0.09) benign(0.01) TCGA-NC-A5HR-01 1 200959276 200959276 T C KIF21B Missense_Mutation p.E1007G 0.39 tolerated(0.05) probably_damaging(0.99) TCGA-NC-A5HR-01 1 202710600 202710600 C A KDM5B Missense_Mutation p.G947V 0.54 deleterious(0.02) probably_damaging(1) TCGA-NC-A5HR-01 1 204083481 204083481 A G SOX13 Silent p.P84P 0.15 TCGA-NC-A5HR-01 1 207646889 207646889 G A CR2 Splice_Site p.X660_splice 0.26 TCGA-NC-A5HR-01 1 213224683 213224683 C T RPS6KC1 5'UTR 0.19 TCGA-NC-A5HR-01 1 213414654 213414654 T C RPS6KC1 Missense_Mutation p.L612P 0.22 deleterious(0.02) benign(0.027) TCGA-NC-A5HR-01 1 216380740 216380740 A T USH2A Missense_Mutation p.V1064D 0.20 possibly_damaging(0.71) TCGA-NC-A5HR-01 1 220835216 220835216 C G MARK1 Missense_Mutation p.S699C 0.21 deleterious(0) probably_damaging(0.968) TCGA-NC-A5HR-01 1 223176197 223176197 G A DISP1 Silent p.G486G 0.25 TCGA-NC-A5HR-01 1 227071420 227071420 C G PSEN2 Missense_Mutation p.N52K 0.19 tolerated(0.76) benign(0.018) TCGA-NC-A5HR-01 1 228475822 228475822 C T OBSCN Missense_Mutation p.A3720V 0.23 benign(0.311) TCGA-NC-A5HR-01 1 228566491 228566491 C G OBSCN Missense_Mutation p.R8923G 0.47 possibly_damaging(0.855) TCGA-NC-A5HR-01 1 240635701 240635701 A G FMN2 Missense_Mutation p.Q1697R 0.19 benign(0.21) TCGA-NC-A5HR-01 1 245849552 245849552 C T KIF26B Silent p.C1089C 0.32 TCGA-NC-A5HR-01 1 247902431 247902431 T A OR14K1 Missense_Mutation p.L172Q 0.45 deleterious(0) possibly_damaging(0.783) TCGA-NC-A5HR-01 1 248224835 248224835 C A OR2L3 Silent p.L284L 0.20 TCGA-NC-A5HR-01 1 248402276 248402276 G T OR2M4 Nonsense_Mutation p.G16* 0.18 TCGA-NC-A5HR-01 1 248525605 248525605 C T OR2T4 Silent p.I241I 0.21 TCGA-NC-A5HR-01 1 36785708 36785708 C T SH3D21 Silent p.L482L 0.50 TCGA-NC-A5HR-01 1 52272519 52272519 G A NRD1 Missense_Mutation p.T754I 0.50 deleterious(0.04) possibly_damaging(0.512) TCGA-NC-A5HR-01 1 70303916 70303916 C A LRRC7 Silent p.V161V 0.48 TCGA-NC-A5HR-01 1 70397211 70397211 G T LRRC7 Missense_Mutation p.Q185H 0.46 deleterious(0) probably_damaging(0.994) TCGA-NC-A5HR-01 20 20079392 20079392 C T C20orf26 Missense_Mutation p.L265F 0.29 tolerated(0.26) benign(0.356) TCGA-NC-A5HR-01 20 20226858 20226858 G A C20orf26 Missense_Mutation p.D720N 0.36 tolerated(0.08) benign(0.024) TCGA-NC-A5HR-01 20 4864325 4864325 C A SLC23A2 Missense_Mutation p.G263W 0.53 deleterious(0) probably_damaging(0.996) TCGA-NC-A5HR-01 20 57429498 57429498 G T GNAS Missense_Mutation p.R393M 0.30 tolerated_low_confidence(0.11) unknown(0) TCGA-NC-A5HR-01 20 60962995 60962995 C G RPS21 Intron 0.31 TCGA-NC-A5HR-01 20 7894984 7894984 C T HAO1 Silent p.E124E 0.50 TCGA-NC-A5HR-01 21 10920104 10920104 C T TPTE Missense_Mutation p.G384R 0.07 deleterious(0) possibly_damaging(0.867) TCGA-NC-A5HR-01 21 15517034 15517034 A - LIPI Frame_Shift_Del p.L423* 0.22 TCGA-NC-A5HR-01 21 17197283 17197283 A T USP25 Splice_Site p.X403_splice 0.35 TCGA-NC-A5HR-01 21 34927038 34927038 A G SON Missense_Mutation p.H1834R 0.32 unknown(0) TCGA-NC-A5HR-01 21 41427723 41427723 G T DSCAM Missense_Mutation p.T1655N 0.24 tolerated(0.15) possibly_damaging(0.63) TCGA-NC-A5HR-01 21 46086662 46086662 C T KRTAP12-2 Missense_Mutation p.V48M 0.09 tolerated(0.08) benign(0.055) TCGA-NC-A5HR-01 22 16287508 16287508 A T POTEH Silent p.S126S 0.23 TCGA-NC-A5HR-01 22 19137235 19137235 C A GSC2 Missense_Mutation p.D152Y 0.53 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HR-01 22 22892429 22892429 C G PRAME Missense_Mutation p.K224N 0.32 tolerated(0.09) possibly_damaging(0.617) TCGA-NC-A5HR-01 22 31302100 31302100 T A OSBP2 Intron 0.35 TCGA-NC-A5HR-01 22 32555007 32555007 G A C22orf42 Missense_Mutation p.L66F 0.18 tolerated_low_confidence(0.17) possibly_damaging(0.765) TCGA-NC-A5HR-01 22 36716386 36716386 G C MYH9 Nonsense_Mutation p.Y297* 0.19 TCGA-NC-A5HR-01 22 40804328 40804328 C A SGSM3 Silent p.L559L 0.26 TCGA-NC-A5HR-01 22 41566451 41566451 G T EP300 Missense_Mutation p.G1443V 0.14 probably_damaging(1) TCGA-NC-A5HR-01 22 41903796 41903796 C A ACO2 Missense_Mutation p.L59M 0.40 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-NC-A5HR-01 2 114257262 114257262 C A FOXD4L1 Nonsense_Mutation p.Y143* 0.35 TCGA-NC-A5HR-01 2 119727766 119727766 G T MARCO Silent p.P92P 0.38 TCGA-NC-A5HR-01 2 138378285 138378285 G C THSD7B Missense_Mutation p.C1266S 0.61 deleterious(0) unknown(0) TCGA-NC-A5HR-01 2 1457590 1457590 C A TPO Missense_Mutation p.P203T 0.35 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HR-01 2 149226734 149226734 C T MBD5 Missense_Mutation p.P408S 0.04 tolerated(0.09) possibly_damaging(0.803) TCGA-NC-A5HR-01 2 163080998 163080998 T A FAP Missense_Mutation p.Y113F 0.60 tolerated(0.09) benign(0.018) TCGA-NC-A5HR-01 2 169792797 169792797 G A ABCB11 Silent p.T919T 0.50 TCGA-NC-A5HR-01 2 175289224 175289224 A G SCRN3 Missense_Mutation p.I313M 0.59 deleterious(0.01) benign(0.354) TCGA-NC-A5HR-01 2 178098945 178098945 G C NFE2L2 Missense_Mutation p.R34G 0.51 deleterious(0) probably_damaging(1) TCGA-NC-A5HR-01 2 179432128 179432128 T C TTN Missense_Mutation p.N26244S 0.57 TCGA-NC-A5HR-01 2 179532191 179532191 C G TTN Missense_Mutation p.K11897N 0.53 TCGA-NC-A5HR-01 2 179666973 179666973 C G TTN Missense_Mutation p.A63P 0.61 TCGA-NC-A5HR-01 2 1843057 1843057 C A MYT1L Missense_Mutation p.A980S 0.37 deleterious(0) possibly_damaging(0.894) TCGA-NC-A5HR-01 2 202149644 202149644 A T CASP8 Missense_Mutation p.D362V 0.45 deleterious(0) probably_damaging(0.978) TCGA-NC-A5HR-01 2 228142180 228142180 T A COL4A3 Missense_Mutation p.L679Q 0.30 unknown(0) TCGA-NC-A5HR-01 2 228168606 228168606 C T COL4A3 Silent p.S1329S 0.65 TCGA-NC-A5HR-01 2 233527587 233527587 G T EFHD1 Missense_Mutation p.Q126H 0.67 deleterious(0.02) probably_damaging(0.999) TCGA-NC-A5HR-01 2 238296568 238296584 GCCGATATTGGCCAACT - COL6A3 Frame_Shift_Del p.E318Afs*4 0.64 TCGA-NC-A5HR-01 2 26750700 26750700 T C OTOF Missense_Mutation p.K76R 0.34 tolerated(1) benign(0.008) TCGA-NC-A5HR-01 2 3425682 3425682 C A TRAPPC12 Missense_Mutation p.L399M 0.61 deleterious(0.03) possibly_damaging(0.667) TCGA-NC-A5HR-01 2 45438 45438 A T FAM110C Splice_Site p.X316_splice 0.36 TCGA-NC-A5HR-01 2 50149084 50149084 A G NRXN1 Nonstop_Mutation p.*1548Rext*10 0.21 TCGA-NC-A5HR-01 2 55907868 55907868 T C PNPT1 Missense_Mutation p.I182V 0.26 tolerated(0.25) benign(0.047) TCGA-NC-A5HR-01 2 77748823 77748823 C G LRRTM4 5'UTR 0.13 TCGA-NC-A5HR-01 2 79364355 79364356 - A REG1P RNA 0.25 TCGA-NC-A5HR-01 2 79364396 79364396 T A REG1P RNA 0.37 TCGA-NC-A5HR-01 2 80101361 80101361 G C CTNNA2 Missense_Mutation p.E249Q 0.50 tolerated(0.51) benign(0.034) TCGA-NC-A5HR-01 2 85890518 85890518 G A SFTPB Missense_Mutation p.P330L 0.05 tolerated(0.06) benign(0.029) TCGA-NC-A5HR-01 2 88424106 88424106 C T FABP1 Splice_Site p.X81_splice 0.38 TCGA-NC-A5HR-01 2 89309642 89309642 C A IGKV1-9 Missense_Mutation p.G63V 0.41 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-NC-A5HR-01 2 89309643 89309643 C A IGKV1-9 Missense_Mutation p.G63W 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.834) TCGA-NC-A5HR-01 3 10130600 10130600 G A FANCD2 Missense_Mutation p.D1217N 0.42 tolerated(0.12) benign(0.113) TCGA-NC-A5HR-01 3 113092310 113092310 C T WDR52 Missense_Mutation p.V798I 0.49 tolerated(0.1) benign(0.117) TCGA-NC-A5HR-01 3 113286544 113286544 C A SIDT1 Missense_Mutation p.H168N 0.23 tolerated(0.81) benign(0.001) TCGA-NC-A5HR-01 3 121342138 121342138 G C FBXO40 Missense_Mutation p.W621S 0.15 deleterious(0) probably_damaging(1) TCGA-NC-A5HR-01 3 121342139 121342139 G T FBXO40 Missense_Mutation p.W621C 0.15 deleterious(0) probably_damaging(1) TCGA-NC-A5HR-01 3 125271366 125271366 T C OSBPL11 Missense_Mutation p.E438G 0.21 deleterious(0.04) probably_damaging(0.993) TCGA-NC-A5HR-01 3 125313565 125313566 GT CCA OSBPL11 Frame_Shift_Ins p.T27Wfs*14 0.13 TCGA-NC-A5HR-01 3 127642407 127642407 A G KBTBD12 Missense_Mutation p.E168G 0.40 deleterious(0) probably_damaging(1) TCGA-NC-A5HR-01 3 140406823 140406823 C A TRIM42 Silent p.A433A 0.12 TCGA-NC-A5HR-01 3 1445097 1445097 A G CNTN6 Missense_Mutation p.I1028V 0.44 tolerated_low_confidence(0.61) benign(0) TCGA-NC-A5HR-01 3 150176204 150176204 A G TSC22D2 Silent p.E708E 0.06 TCGA-NC-A5HR-01 3 157098976 157098976 G T VEPH1 Missense_Mutation p.Q366K 0.64 tolerated(0.1) benign(0.005) TCGA-NC-A5HR-01 3 157178105 157178105 T C VEPH1 Missense_Mutation p.I132V 0.18 tolerated(1) benign(0.002) TCGA-NC-A5HR-01 3 157188133 157188133 G A VEPH1 Silent p.I108I 0.28 TCGA-NC-A5HR-01 3 157817656 157817656 A T SHOX2 Missense_Mutation p.F256Y 0.35 tolerated(0.05) probably_damaging(0.992) TCGA-NC-A5HR-01 3 164907222 164907222 T C SLITRK3 Missense_Mutation p.N466S 0.04 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HR-01 3 167090671 167090671 C A ZBBX Missense_Mutation p.V7L 0.12 deleterious(0.01) possibly_damaging(0.604) TCGA-NC-A5HR-01 3 167543223 167543223 G T SERPINI1 3'UTR 0.12 TCGA-NC-A5HR-01 3 182853571 182853571 G T LAMP3 Missense_Mutation p.L351M 0.16 deleterious(0) probably_damaging(0.968) TCGA-NC-A5HR-01 3 192993092 192993092 C T ATP13A5 Splice_Site p.X1133_splice 0.19 TCGA-NC-A5HR-01 3 38740002 38740002 G T SCN10A Missense_Mutation p.T1570K 0.32 deleterious(0) probably_damaging(0.988) TCGA-NC-A5HR-01 3 43122086 43122086 T C POMGNT2 Missense_Mutation p.T280A 0.39 tolerated(0.86) benign(0.002) TCGA-NC-A5HR-01 3 52858872 52858872 T A ITIH4 Missense_Mutation p.R288W 0.38 deleterious(0) probably_damaging(0.996) TCGA-NC-A5HR-01 3 62307641 62307641 G T C3orf14 Missense_Mutation p.E30D 0.41 deleterious(0.01) benign(0.004) TCGA-NC-A5HR-01 3 73433731 73433731 G A PDZRN3 Silent p.Y662Y 0.38 TCGA-NC-A5HR-01 4 114276828 114276828 G C ANK2 Missense_Mutation p.G2352R 0.35 benign(0.005) TCGA-NC-A5HR-01 4 114281999 114281999 C T ANK2 Missense_Mutation p.R3568W 0.22 probably_damaging(0.944) TCGA-NC-A5HR-01 4 115997847 115997847 C A NDST4 Missense_Mutation p.D116Y 0.31 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HR-01 4 123141508 123141508 T C KIAA1109 Silent p.P832P 0.28 TCGA-NC-A5HR-01 4 144467968 144467968 A C SMARCA5 Missense_Mutation p.I854L 0.42 deleterious(0.02) benign(0.036) TCGA-NC-A5HR-01 4 186545337 186545337 C G SORBS2 Missense_Mutation p.E512Q 0.09 tolerated(0.19) benign(0.053) TCGA-NC-A5HR-01 4 187531170 187531170 C A FAT1 Splice_Site p.X3285_splice 0.38 TCGA-NC-A5HR-01 4 20543205 20543205 C T SLIT2 Silent p.I702I 0.35 TCGA-NC-A5HR-01 4 20543207 20543207 A T SLIT2 Missense_Mutation p.Q703L 0.35 deleterious(0) probably_damaging(0.989) TCGA-NC-A5HR-01 4 39122666 39122666 G T KLHL5 Missense_Mutation p.V750F 0.36 deleterious(0) probably_damaging(0.973) TCGA-NC-A5HR-01 4 46263825 46263825 G T GABRA2 Intron 0.30 TCGA-NC-A5HR-01 4 57181651 57181651 C G KIAA1211 Missense_Mutation p.S661R 0.52 deleterious(0.01) possibly_damaging(0.654) TCGA-NC-A5HR-01 4 72622540 72622540 A T GC Missense_Mutation p.V327D 0.43 tolerated(0.5) benign(0.197) TCGA-NC-A5HR-01 4 83778206 83778206 G A SEC31A Missense_Mutation p.R594C 0.45 deleterious(0.02) probably_damaging(1) TCGA-NC-A5HR-01 5 137902715 137902715 T A HSPA9 Missense_Mutation p.H285L 0.56 deleterious_low_confidence(0.01) benign(0.138) TCGA-NC-A5HR-01 5 137904706 137904706 G C HSPA9 Missense_Mutation p.S148C 0.43 deleterious_low_confidence(0.01) probably_damaging(0.968) TCGA-NC-A5HR-01 5 138283055 138283055 G T SIL1 Nonsense_Mutation p.C379* 0.52 TCGA-NC-A5HR-01 5 140167621 140167621 G T PCDHA1 Silent p.P582P 0.49 TCGA-NC-A5HR-01 5 140222368 140222368 G T PCDHA8 Missense_Mutation p.A488S 0.44 tolerated_low_confidence(0.08) probably_damaging(0.91) TCGA-NC-A5HR-01 5 140255261 140255261 C T PCDHA12 Silent p.S68S 0.42 TCGA-NC-A5HR-01 5 140554732 140554732 G A PCDHB7 Silent p.L772L 0.22 TCGA-NC-A5HR-01 5 140712261 140712261 C T PCDHGA1 Silent p.D670D 0.43 TCGA-NC-A5HR-01 5 158747455 158747455 C G IL12B Missense_Mutation p.E186Q 0.53 tolerated(0.23) possibly_damaging(0.56) TCGA-NC-A5HR-01 5 168187935 168187935 C A SLIT3 Silent p.L539L 0.56 TCGA-NC-A5HR-01 5 173491307 173491307 G C NSG2 Missense_Mutation p.A68P 0.46 tolerated(0.07) probably_damaging(0.922) TCGA-NC-A5HR-01 5 176316400 176316400 A G HK3 Missense_Mutation p.L299P 0.43 deleterious(0) probably_damaging(0.993) TCGA-NC-A5HR-01 5 179541458 179541458 G T RASGEF1C Missense_Mutation p.H389Q 0.36 tolerated(0.07) probably_damaging(0.954) TCGA-NC-A5HR-01 5 24488123 24488123 G T CDH10 Silent p.I672I 0.45 TCGA-NC-A5HR-01 5 24537751 24537751 T A CDH10 Silent p.S88S 0.54 TCGA-NC-A5HR-01 5 33549337 33549337 G T ADAMTS12 Missense_Mutation p.A1426E 0.48 tolerated(1) benign(0) TCGA-NC-A5HR-01 5 41510636 41510636 G T PLCXD3 5'UTR 0.47 TCGA-NC-A5HR-01 5 54404156 54404158 TAA AT GZMA Frame_Shift_Del p.F187Lfs*4 0.38 TCGA-NC-A5HR-01 5 72469692 72469692 C T TMEM174 Missense_Mutation p.H208Y 0.48 tolerated(0.19) benign(0.036) TCGA-NC-A5HR-01 5 78076288 78076288 C T ARSB Missense_Mutation p.V512M 0.31 deleterious(0.02) benign(0.087) TCGA-NC-A5HR-01 5 79030186 79030186 A G CMYA5 Silent p.S1866S 0.46 TCGA-NC-A5HR-01 5 89989943 89989943 C T GPR98 Missense_Mutation p.A2457V 0.58 benign(0.348) TCGA-NC-A5HR-01 6 123384847 123384847 C A CLVS2 Missense_Mutation p.L309I 0.55 tolerated_low_confidence(0.12) benign(0.41) TCGA-NC-A5HR-01 6 128150792 128150792 G T THEMIS Missense_Mutation p.R180S 0.41 tolerated(0.4) benign(0.178) TCGA-NC-A5HR-01 6 167570855 167570855 G A GPR31 Silent p.A155A 0.34 TCGA-NC-A5HR-01 6 26246912 26246912 C A HIST1H4G Silent p.L98L 0.33 TCGA-NC-A5HR-01 6 27860500 27860504 TTGTC - HIST1H2AM 3'UTR 0.36 TCGA-NC-A5HR-01 6 30128426 30128426 C A TRIM10 Silent p.R70R 0.29 TCGA-NC-A5HR-01 6 33232616 33232616 T A VPS52 Missense_Mutation p.H448L 0.35 deleterious(0.02) possibly_damaging(0.739) TCGA-NC-A5HR-01 6 35547936 35547936 T A FKBP5 Missense_Mutation p.E301D 0.35 tolerated(0.09) benign(0.015) TCGA-NC-A5HR-01 6 44116336 44116336 A C TMEM63B Missense_Mutation p.H403P 0.22 tolerated(0.08) benign(0.378) TCGA-NC-A5HR-01 6 46826584 46826584 C A GPR116 Missense_Mutation p.G1019V 0.29 deleterious(0) probably_damaging(1) TCGA-NC-A5HR-01 6 47976795 47976795 T C PTCHD4 Missense_Mutation p.N161S 0.25 tolerated(0.33) probably_damaging(0.987) TCGA-NC-A5HR-01 6 51892631 51892631 C - PKHD1 Frame_Shift_Del p.L1209Wfs*11 0.25 TCGA-NC-A5HR-01 6 73919663 73919663 G T RP11-257K9.8 3'UTR 0.65 TCGA-NC-A5HR-01 6 90604656 90604656 T A GJA10 Missense_Mutation p.Y157N 0.41 deleterious(0) probably_damaging(0.996) TCGA-NC-A5HR-01 7 100675635 100675635 G T MUC17 Missense_Mutation p.S313I 0.47 benign(0.441) TCGA-NC-A5HR-01 7 101960867 101960867 G C SH2B2 Missense_Mutation p.D528H 0.25 deleterious(0.01) benign(0.4) TCGA-NC-A5HR-01 7 103417053 103417053 G C RELN Silent p.G165G 0.28 TCGA-NC-A5HR-01 7 107556008 107556008 G T DLD Missense_Mutation p.V248L 0.43 tolerated(0.05) benign(0.039) TCGA-NC-A5HR-01 7 126173333 126173333 G T GRM8 Missense_Mutation p.S701R 0.25 tolerated(0.12) probably_damaging(0.999) TCGA-NC-A5HR-01 7 141755854 141755854 G C MGAM Missense_Mutation p.G1180R 0.41 deleterious(0) probably_damaging(0.948) TCGA-NC-A5HR-01 7 142111419 142111419 G C TRBV5-7 Missense_Mutation p.A106G 0.21 deleterious(0.02) possibly_damaging(0.786) TCGA-NC-A5HR-01 7 142378836 142378836 G T MTRNR2L6 3'Flank 0.48 TCGA-NC-A5HR-01 7 142832330 142832330 C T PIP Missense_Mutation p.R47C 0.55 deleterious(0.03) benign(0.357) TCGA-NC-A5HR-01 7 150647372 150647372 G T KCNH2 Missense_Mutation p.T761K 0.57 deleterious(0) probably_damaging(0.992) TCGA-NC-A5HR-01 7 151859787 151859787 G A KMT2C Silent p.P3625P 0.47 TCGA-NC-A5HR-01 7 156994431 156994431 G A UBE3C Missense_Mutation p.A450T 0.45 deleterious(0.01) probably_damaging(0.946) TCGA-NC-A5HR-01 7 16640572 16640572 T C ANKMY2 Splice_Site p.X381_splice 0.32 TCGA-NC-A5HR-01 7 21757399 21757399 G T DNAH11 Silent p.V2337V 0.35 TCGA-NC-A5HR-01 7 32110078 32110078 G A PDE1C Intron 0.12 TCGA-NC-A5HR-01 7 34085969 34085969 C G BMPER Missense_Mutation p.Q210E 0.43 tolerated(1) benign(0.003) TCGA-NC-A5HR-01 7 37923949 37923949 G T NME8 Nonsense_Mutation p.E347* 0.34 TCGA-NC-A5HR-01 7 4900306 4900306 A G PAPOLB Missense_Mutation p.L378P 0.32 deleterious(0.05) probably_damaging(0.993) TCGA-NC-A5HR-01 7 53104160 53104160 G T POM121L12 Missense_Mutation p.D266Y 0.36 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-NC-A5HR-01 7 57194300 57194300 C A ZNF479 Silent p.L55L 0.10 TCGA-NC-A5HR-01 7 57194303 57194303 G C ZNF479 Silent p.S54S 0.14 TCGA-NC-A5HR-01 7 57528523 57528523 G A ZNF716 Missense_Mutation p.G119E 0.17 tolerated(0.11) benign(0.275) TCGA-NC-A5HR-01 7 66785110 66785110 C G STAG3L4 RNA 0.21 TCGA-NC-A5HR-01 7 75933167 75933167 T G HSPB1 Missense_Mutation p.F138C 0.22 deleterious(0) probably_damaging(0.954) TCGA-NC-A5HR-01 7 81593573 81593573 C A CACNA2D1 Nonsense_Mutation p.E893* 0.24 TCGA-NC-A5HR-01 7 88963433 88963433 G T ZNF804B Missense_Mutation p.R379S 0.10 tolerated(0.22) benign(0.043) TCGA-NC-A5HR-01 7 99699003 99699003 G T MCM7 5'UTR 0.20 TCGA-NC-A5HR-01 8 101719173 101719173 A T PABPC1 Missense_Mutation p.F463L 0.14 tolerated(0.67) benign(0.001) TCGA-NC-A5HR-01 8 103664462 103664462 G A KLF10 Missense_Mutation p.P67L 0.24 deleterious(0) probably_damaging(1) TCGA-NC-A5HR-01 8 11189430 11189430 A C SLC35G5 Missense_Mutation p.Y272S 0.57 tolerated(0.07) probably_damaging(0.999) TCGA-NC-A5HR-01 8 113249502 113249502 G T CSMD3 Missense_Mutation p.T3515N 0.33 deleterious(0.04) benign(0.041) TCGA-NC-A5HR-01 8 113842019 113842019 C A CSMD3 Splice_Site p.X586_splice 0.19 TCGA-NC-A5HR-01 8 124358452 124358452 T A ATAD2 Silent p.G802G 0.31 TCGA-NC-A5HR-01 8 126056114 126056114 C A KIAA0196 Missense_Mutation p.A935S 0.27 tolerated(0.99) benign(0.018) TCGA-NC-A5HR-01 8 139163792 139163792 G T FAM135B Missense_Mutation p.P976T 0.30 tolerated_low_confidence(0.62) benign(0.021) TCGA-NC-A5HR-01 8 139263195 139263195 G T FAM135B Missense_Mutation p.P144H 0.21 deleterious(0.01) possibly_damaging(0.74) TCGA-NC-A5HR-01 8 141460970 141460970 G A TRAPPC9 Missense_Mutation p.T266I 0.25 deleterious(0.03) possibly_damaging(0.849) TCGA-NC-A5HR-01 8 144773828 144773828 G T ZNF707 Missense_Mutation p.W67C 0.18 deleterious(0) probably_damaging(0.996) TCGA-NC-A5HR-01 8 144946546 144946546 C G EPPK1 Silent p.L292L 0.37 TCGA-NC-A5HR-01 8 145254063 145254063 G C MROH1 Missense_Mutation p.M329I 0.31 tolerated(0.39) benign(0.001) TCGA-NC-A5HR-01 8 19263215 19263215 C G CSGALNACT1 3'UTR 0.52 TCGA-NC-A5HR-01 8 25232088 25232088 A T DOCK5 Missense_Mutation p.Y1245F 0.47 deleterious(0.02) possibly_damaging(0.57) TCGA-NC-A5HR-01 8 3224581 3224581 A T CSMD1 Missense_Mutation p.Y1030N 0.44 probably_damaging(0.999) TCGA-NC-A5HR-01 8 35624567 35624567 C T UNC5D Nonsense_Mutation p.Q821* 0.48 TCGA-NC-A5HR-01 8 38050313 38050313 G T BAG4 Missense_Mutation p.Q126H 0.08 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HR-01 8 72756314 72756314 C T MSC Missense_Mutation p.V34I 0.29 tolerated_low_confidence(0.41) benign(0.004) TCGA-NC-A5HR-01 8 73849040 73849040 G A KCNB2 Missense_Mutation p.D484N 0.09 deleterious(0.02) benign(0.262) TCGA-NC-A5HR-01 8 77895438 77895438 C A PEX2 3'UTR 0.21 TCGA-NC-A5HR-01 8 88218306 88218306 A T CNBD1 Nonsense_Mutation p.K173* 0.25 TCGA-NC-A5HR-01 8 88885333 88885333 G T DCAF4L2 Missense_Mutation p.D289E 0.28 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HR-01 9 118974046 118974046 G T PAPPA Missense_Mutation p.D585Y 0.56 deleterious(0) probably_damaging(0.961) TCGA-NC-A5HR-01 9 127265401 127265401 G T NR5A1 Missense_Mutation p.F67L 0.21 deleterious(0.01) benign(0.446) TCGA-NC-A5HR-01 9 132985015 132985015 G T NCS1 Missense_Mutation p.V132L 0.77 tolerated(0.07) benign(0.005) TCGA-NC-A5HR-01 9 138594161 138594161 C T KCNT1 Silent p.G19G 0.68 TCGA-NC-A5HR-01 9 21971105 21971105 C G CDKN2A Missense_Mutation p.A85P 0.74 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HR-01 9 7015892 7015892 G T KDM4C Missense_Mutation p.W741L 0.69 deleterious(0) possibly_damaging(0.874) TCGA-NC-A5HR-01 9 74481908 74481908 G C ABHD17B Missense_Mutation p.S221C 0.05 deleterious(0) probably_damaging(0.917) TCGA-NC-A5HR-01 9 78784755 78784755 A T PCSK5 Silent p.P585P 0.12 TCGA-NC-A5HR-01 9 84531128 84531128 C T SPATA31D5P RNA 0.50 TCGA-NC-A5HR-01 9 90503227 90503227 C A SPATA31E1 Missense_Mutation p.H1275Q 0.62 tolerated(0.16) benign(0.249) TCGA-NC-A5HR-01 X 106046175 106046175 G T TBC1D8B Missense_Mutation p.R31L 0.46 deleterious(0.04) probably_damaging(1) TCGA-NC-A5HR-01 X 134428026 134428026 G C ZNF75D Missense_Mutation p.P14R 0.31 deleterious(0.02) benign(0) TCGA-NC-A5HR-01 X 140985073 140985073 G A MAGEC3 Missense_Mutation p.G510D 0.48 deleterious(0) probably_damaging(1) TCGA-NC-A5HR-01 X 142717244 142717244 C A SLITRK4 Nonsense_Mutation p.E561* 0.46 TCGA-NC-A5HR-01 X 144337221 144337221 C A SPANXN1 Missense_Mutation p.P36T 0.47 tolerated(0.07) benign(0.015) TCGA-NC-A5HR-01 X 144909558 144909558 C A TMEM257 3'UTR 0.30 TCGA-NC-A5HR-01 X 148564483 148564483 T C IDS Missense_Mutation p.K272E 0.44 tolerated(0.27) benign(0.021) TCGA-NC-A5HR-01 X 149013456 149013456 A G MAGEA8 Missense_Mutation p.E137G 0.46 deleterious(0) probably_damaging(1) TCGA-NC-A5HR-01 X 26157189 26157189 G T MAGEB18 Missense_Mutation p.Q29H 0.32 deleterious(0.04) possibly_damaging(0.461) TCGA-NC-A5HR-01 X 37026802 37026802 C A FAM47C Missense_Mutation p.L107I 0.52 deleterious(0) possibly_damaging(0.511) TCGA-NC-A5HR-01 X 44949175 44949175 G C KDM6A Missense_Mutation p.A1246P 0.52 tolerated(0.08) benign(0.103) TCGA-NC-A5HR-01 X 51486915 51486915 G T GSPT2 Missense_Mutation p.A65S 0.41 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-NC-A5HR-01 X 53576007 53576007 T A HUWE1 Silent p.A3316A 0.55 TCGA-NC-A5HR-01 X 5821698 5821698 C A NLGN4X Missense_Mutation p.G341W 0.49 deleterious(0) probably_damaging(1) TCGA-NC-A5HR-01 X 62863908 62863908 G A ARHGEF9 Nonsense_Mutation p.Q441* 0.44 TCGA-NC-A5HR-01 X 65238813 65238813 G T VSIG4 3'Flank 0.55 TCGA-NC-A5HR-01 X 73062909 73062909 G A XIST RNA 0.37 TCGA-NC-A5HR-01 X 79278626 79278626 C A TBX22 Silent p.G81G 0.39 TCGA-NC-A5HR-01 X 85156107 85156107 C A CHM Missense_Mutation p.C444F 0.20 deleterious(0.03) probably_damaging(1) TCGA-NC-A5HR-01 X 91873543 91873543 G T PCDH11X Silent p.V1216V 0.51 TCGA-NC-A5HT-01 10 106865177 106865177 G T SORCS3 Missense_Mutation p.R372S 0.58 deleterious(0.01) possibly_damaging(0.855) TCGA-NC-A5HT-01 10 11207494 11207494 C G CELF2 Missense_Mutation p.D40E 0.19 tolerated(0.17) probably_damaging(0.94) TCGA-NC-A5HT-01 10 11363292 11363292 A T CELF2 Missense_Mutation p.T413S 0.20 tolerated(0.51) benign(0.018) TCGA-NC-A5HT-01 10 114224376 114224376 G A VTI1A Missense_Mutation p.R75K 0.38 tolerated(1) benign(0.002) TCGA-NC-A5HT-01 10 1229255 1229255 T G ADARB2 Missense_Mutation p.K700Q 0.23 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HT-01 10 12866487 12866487 A T CAMK1D Missense_Mutation p.N286I 0.49 deleterious(0.03) benign(0.042) TCGA-NC-A5HT-01 10 133784279 133784279 A G BNIP3 Silent p.F134F 0.61 TCGA-NC-A5HT-01 10 15702892 15702892 G A ITGA8 Nonsense_Mutation p.Q293* 0.51 TCGA-NC-A5HT-01 10 18961573 18961573 G T ARL5B Missense_Mutation p.S93I 0.20 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HT-01 10 27539301 27539301 G - RP11-85G18.6 RNA 0.20 TCGA-NC-A5HT-01 10 37486403 37486403 G T ANKRD30A Missense_Mutation p.R848I 0.20 tolerated(0.07) possibly_damaging(0.447) TCGA-NC-A5HT-01 10 38344647 38344647 A T ZNF33A Missense_Mutation p.K532I 0.25 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HT-01 10 58120130 58120130 A T ZWINT Missense_Mutation p.V19E 0.41 deleterious(0) unknown(0) TCGA-NC-A5HT-01 10 6268204 6268204 C T PFKFB3 Missense_Mutation p.P464L 0.22 possibly_damaging(0.813) TCGA-NC-A5HT-01 10 69667847 69667847 G C SIRT1 Missense_Mutation p.D379H 0.61 deleterious(0) probably_damaging(0.996) TCGA-NC-A5HT-01 10 70931108 70931108 G C VPS26A 3'UTR 0.67 TCGA-NC-A5HT-01 10 73455213 73455213 C A CDH23 Silent p.P368P 0.48 TCGA-NC-A5HT-01 11 100999693 100999693 G T PGR Missense_Mutation p.P37T 0.82 deleterious_low_confidence(0.01) benign(0.039) TCGA-NC-A5HT-01 11 118984870 118984870 G A C2CD2L Silent p.G569G 0.78 TCGA-NC-A5HT-01 11 123777216 123777216 C G OR8D4 Silent p.P26P 0.76 TCGA-NC-A5HT-01 11 22387232 22387232 G A SLC17A6 Missense_Mutation p.M296I 0.27 tolerated(0.37) benign(0.002) TCGA-NC-A5HT-01 11 22646833 22646833 T A FANCF Missense_Mutation p.Q175L 0.35 deleterious(0.02) benign(0.339) TCGA-NC-A5HT-01 11 4091338 4091338 C G STIM1 Missense_Mutation p.I232M 0.44 deleterious(0.01) probably_damaging(0.991) TCGA-NC-A5HT-01 11 45827610 45827610 G C SLC35C1 Silent p.L86L 0.35 TCGA-NC-A5HT-01 11 46840005 46840005 T C CKAP5 Missense_Mutation p.Q36R 0.37 tolerated(0.29) benign(0.22) TCGA-NC-A5HT-01 11 48346649 48346649 T C OR4C3 Missense_Mutation p.F53L 0.20 deleterious(0.03) benign(0.023) TCGA-NC-A5HT-01 11 55703012 55703012 G T OR5I1 Missense_Mutation p.P289T 0.25 deleterious(0.01) benign(0.255) TCGA-NC-A5HT-01 11 57958209 57958209 G T OR9Q2 Missense_Mutation p.A83S 0.30 tolerated(0.11) benign(0.394) TCGA-NC-A5HT-01 11 59211067 59211067 C A OR5A1 Silent p.G142G 0.40 TCGA-NC-A5HT-01 11 61645679 61645679 C T FADS3 Silent p.K252K 0.31 TCGA-NC-A5HT-01 11 62300657 62300657 G A AHNAK Missense_Mutation p.P411L 0.34 probably_damaging(0.913) TCGA-NC-A5HT-01 11 62417344 62417344 G A INTS5 Missense_Mutation p.R70W 0.32 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HT-01 11 65810450 65810450 C G GAL3ST3 Missense_Mutation p.R275P 0.48 tolerated(0.15) possibly_damaging(0.715) TCGA-NC-A5HT-01 11 75155522 75155522 G T GDPD5 Missense_Mutation p.L245I 0.22 tolerated(0.2) benign(0.079) TCGA-NC-A5HT-01 11 85375353 85375353 G A CREBZF Silent p.S189S 0.55 TCGA-NC-A5HT-01 11 89774501 89774501 G A TRIM49C Missense_Mutation p.G381E 0.31 deleterious(0.02) benign(0.038) TCGA-NC-A5HT-01 12 100720429 100720429 A G SCYL2 Silent p.G513G 0.23 TCGA-NC-A5HT-01 12 100813630 100813630 C T SLC17A8 Missense_Mutation p.A488V 0.32 deleterious(0) possibly_damaging(0.579) TCGA-NC-A5HT-01 12 104337008 104337008 A G HSP90B1 Missense_Mutation p.S601G 0.40 tolerated(0.59) benign(0.003) TCGA-NC-A5HT-01 12 11061196 11061196 C T TAS2R13 Silent p.V234V 0.38 TCGA-NC-A5HT-01 12 117710226 117710226 G A NOS1 Silent p.R601R 0.33 TCGA-NC-A5HT-01 12 2970528 2970528 G A FOXM1 Silent p.G439G 0.32 TCGA-NC-A5HT-01 12 44125552 44125552 C A PUS7L Missense_Mutation p.V579L 0.19 tolerated(0.06) possibly_damaging(0.791) TCGA-NC-A5HT-01 12 4554636 4554636 A G FGF6 Missense_Mutation p.M34T 0.37 tolerated(0.23) benign(0) TCGA-NC-A5HT-01 12 46287448 46287448 A C ARID2 Silent p.R1769R 0.33 TCGA-NC-A5HT-01 12 49436563 49436563 C A KMT2D Nonsense_Mutation p.E1915* 0.40 TCGA-NC-A5HT-01 12 49522176 49522176 A T TUBA1B Silent p.P307P 0.26 TCGA-NC-A5HT-01 12 65857092 65857092 C A MSRB3 Missense_Mutation p.A190E 0.35 deleterious_low_confidence(0.01) benign(0.061) TCGA-NC-A5HT-01 12 7842781 7842781 A G GDF3 Missense_Mutation p.L263P 0.31 deleterious(0) probably_damaging(0.989) TCGA-NC-A5HT-01 12 81239713 81239713 T A LIN7A Silent p.T93T 0.29 TCGA-NC-A5HT-01 12 93139278 93139278 A T PLEKHG7 Missense_Mutation p.S76C 0.42 tolerated(0.29) benign(0.033) TCGA-NC-A5HT-01 12 96374362 96374362 C A HAL Missense_Mutation p.M497I 0.29 deleterious(0) probably_damaging(1) TCGA-NC-A5HT-01 13 101997728 101997728 A C NALCN Missense_Mutation p.S230A 0.47 tolerated(0.07) possibly_damaging(0.893) TCGA-NC-A5HT-01 13 113481044 113481044 G C ATP11A Missense_Mutation p.V354L 0.52 deleterious(0) possibly_damaging(0.893) TCGA-NC-A5HT-01 13 113980120 113980120 C A GRTP1 Silent p.S259S 0.58 TCGA-NC-A5HT-01 13 78218507 78218507 G A SCEL 3'UTR 0.60 TCGA-NC-A5HT-01 13 84454874 84454874 C A SLITRK1 Nonsense_Mutation p.E257* 0.47 TCGA-NC-A5HT-01 14 22356647 22356647 C A TRAV12-2 Missense_Mutation p.P102H 0.29 tolerated(0.08) benign(0.43) TCGA-NC-A5HT-01 14 23235939 23235939 G T OXA1L Missense_Mutation p.R70L 0.32 deleterious_low_confidence(0.04) benign(0.024) TCGA-NC-A5HT-01 14 50360449 50360449 G T ARF6 5'UTR 0.61 TCGA-NC-A5HT-01 14 56233441 56233441 C A RP11-813I20.2 Intron 0.70 TCGA-NC-A5HT-01 14 64491953 64491953 C T SYNE2 Silent p.Y2022Y 0.74 TCGA-NC-A5HT-01 14 64519229 64519229 G T SYNE2 Silent p.T2866T 0.77 TCGA-NC-A5HT-01 14 94088953 94088953 G A UNC79 Missense_Mutation p.E1615K 0.34 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-NC-A5HT-01 15 101562128 101562128 C T LRRK1 Silent p.T606T 0.22 TCGA-NC-A5HT-01 15 20651145 20651145 G T HERC2P3 RNA 0.19 TCGA-NC-A5HT-01 15 23889156 23889156 C G MAGEL2 Missense_Mutation p.R642T 0.31 deleterious_low_confidence(0.05) benign(0.011) TCGA-NC-A5HT-01 15 27126094 27126094 G T GABRA5 Missense_Mutation p.R63I 0.40 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HT-01 15 35152283 35152283 A C AQR Missense_Mutation p.M1368R 0.35 tolerated(0.17) benign(0.008) TCGA-NC-A5HT-01 15 48541871 48541871 C G SLC12A1 Missense_Mutation p.P595R 0.38 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HT-01 15 49034293 49034293 G A CEP152 Silent p.D1280D 0.40 TCGA-NC-A5HT-01 15 49293177 49293177 C T SECISBP2L Silent p.R715R 0.32 TCGA-NC-A5HT-01 15 49584670 49584670 C T GALK2 Silent p.C301C 0.37 TCGA-NC-A5HT-01 15 50544808 50544808 C A HDC Splice_Site p.X317_splice 0.29 TCGA-NC-A5HT-01 15 50544809 50544809 C A HDC Missense_Mutation p.W317L 0.29 deleterious(0) probably_damaging(1) TCGA-NC-A5HT-01 15 53997330 53997330 C A WDR72 Silent p.G401G 0.31 TCGA-NC-A5HT-01 15 63848918 63848918 A G USP3 Missense_Mutation p.T141A 0.23 tolerated(0.46) benign(0.001) TCGA-NC-A5HT-01 15 65347379 65347379 G T RASL12 Missense_Mutation p.T220N 0.47 tolerated_low_confidence(0.17) benign(0.004) TCGA-NC-A5HT-01 15 65771313 65771313 G C DPP8 Missense_Mutation p.S470C 0.16 deleterious(0) possibly_damaging(0.882) TCGA-NC-A5HT-01 15 67073387 67073387 G A SMAD6 Silent p.A335A 0.36 TCGA-NC-A5HT-01 15 77328246 77328246 G A PSTPIP1 Silent p.E363E 0.19 TCGA-NC-A5HT-01 15 88420298 88420299 GG T NTRK3 Frame_Shift_Del p.P796Qfs*20 0.13 TCGA-NC-A5HT-01 15 89870175 89870175 G T POLG Missense_Mutation p.A518D 0.62 tolerated(0.53) benign(0.003) TCGA-NC-A5HT-01 16 15609226 15609226 G T C16orf45 Missense_Mutation p.M57I 0.54 deleterious(0.03) probably_damaging(0.95) TCGA-NC-A5HT-01 16 19548102 19548102 A G CCP110 Missense_Mutation p.M371V 0.49 tolerated(0.3) benign(0.004) TCGA-NC-A5HT-01 16 26147070 26147070 T A HS3ST4 Missense_Mutation p.V291E 0.24 deleterious(0) probably_damaging(1) TCGA-NC-A5HT-01 16 28167577 28167577 G A XPO6 Silent p.R305R 0.21 TCGA-NC-A5HT-01 16 3016224 3016224 C A KREMEN2 Missense_Mutation p.S118Y 0.53 deleterious(0) possibly_damaging(0.797) TCGA-NC-A5HT-01 16 31105592 31105592 C T VKORC1 Intron 0.18 TCGA-NC-A5HT-01 16 31371018 31371018 C T ITGAX Intron 0.12 TCGA-NC-A5HT-01 16 8890054 8890054 G C TMEM186 Missense_Mutation p.L133V 0.48 tolerated(0.81) benign(0.009) TCGA-NC-A5HT-01 17 28320276 28320276 G T EFCAB5 Missense_Mutation p.Q287H 0.27 deleterious(0.03) benign(0.099) TCGA-NC-A5HT-01 17 34072949 34072949 T A GAS2L2 Missense_Mutation p.T523S 0.34 tolerated(0.6) benign(0.015) TCGA-NC-A5HT-01 17 39633389 39633389 C T KRT35 Silent p.A429A 0.30 TCGA-NC-A5HT-01 17 4451461 4451461 C G MYBBP1A Silent p.A567A 0.35 TCGA-NC-A5HT-01 17 48456882 48456882 G A EME1 Missense_Mutation p.D447N 0.27 deleterious(0.04) benign(0.401) TCGA-NC-A5HT-01 17 51902032 51902032 T C KIF2B Silent p.D546D 0.37 TCGA-NC-A5HT-01 17 55072370 55072370 G T SCPEP1 Silent p.L216L 0.33 TCGA-NC-A5HT-01 17 61611666 61611666 C T KCNH6 Silent p.S365S 0.44 TCGA-NC-A5HT-01 17 61972867 61972867 T C CSH1 Missense_Mutation p.K141R 0.31 tolerated(0.15) probably_damaging(0.912) TCGA-NC-A5HT-01 17 62291462 62291462 G A TEX2 Missense_Mutation p.S39L 0.05 deleterious_low_confidence(0.03) benign(0.007) TCGA-NC-A5HT-01 17 66933136 66933136 A G ABCA8 Missense_Mutation p.L141P 0.43 tolerated(0.3) benign(0.014) TCGA-NC-A5HT-01 17 67008130 67008130 A G ABCA9 Missense_Mutation p.I1045T 0.38 tolerated(0.08) benign(0.363) TCGA-NC-A5HT-01 17 7214928 7214928 C A EIF5A Missense_Mutation p.A175E 0.44 tolerated(0.16) benign(0.242) TCGA-NC-A5HT-01 17 72470821 72470821 C A CD300A Nonsense_Mutation p.S177* 0.21 TCGA-NC-A5HT-01 17 73702607 73702607 G A SAP30BP 3'UTR 0.64 TCGA-NC-A5HT-01 17 7578397 7578398 TG A TP53 Frame_Shift_Del p.H178Sfs*69 0.48 TCGA-NC-A5HT-01 17 79108183 79108183 G T AATK Silent p.G58G 0.78 TCGA-NC-A5HT-01 17 80395185 80395185 C A HEXDC Missense_Mutation p.A282E 0.57 tolerated(0.07) possibly_damaging(0.8) TCGA-NC-A5HT-01 18 13885409 13885409 C A MC2R Missense_Mutation p.V37F 0.30 deleterious(0.04) benign(0.001) TCGA-NC-A5HT-01 18 22807182 22807182 C A ZNF521 Missense_Mutation p.G234C 0.38 tolerated(0.07) possibly_damaging(0.82) TCGA-NC-A5HT-01 18 31319729 31319729 C G ASXL3 Silent p.S787S 0.28 TCGA-NC-A5HT-01 18 334903 334903 G A COLEC12 Missense_Mutation p.T552I 0.33 tolerated(0.21) unknown(0) TCGA-NC-A5HT-01 18 47806321 47806321 G T MBD1 Silent p.G14G 0.34 TCGA-NC-A5HT-01 18 5397242 5397242 A T EPB41L3 Missense_Mutation p.F886I 0.33 tolerated_low_confidence(0.38) benign(0.004) TCGA-NC-A5HT-01 18 55398903 55398903 C T ATP8B1 Missense_Mutation p.R46Q 0.35 tolerated_low_confidence(0.34) benign(0.002) TCGA-NC-A5HT-01 18 60033948 60033948 G T TNFRSF11A Missense_Mutation p.L246F 0.37 deleterious(0.02) probably_damaging(0.974) TCGA-NC-A5HT-01 18 6999950 6999950 C A LAMA1 Missense_Mutation p.D1477Y 0.27 deleterious(0.01) probably_damaging(0.987) TCGA-NC-A5HT-01 18 77170969 77170969 G T NFATC1 Missense_Mutation p.G219C 0.35 deleterious(0.04) benign(0.043) TCGA-NC-A5HT-01 19 10079351 10079351 C A COL5A3 Missense_Mutation p.K1402N 0.40 unknown(0) TCGA-NC-A5HT-01 19 1063593 1063593 G T ABCA7 Silent p.R1921R 0.37 TCGA-NC-A5HT-01 19 10668266 10668266 T C KRI1 Missense_Mutation p.T533A 0.34 tolerated(0.57) benign(0.013) TCGA-NC-A5HT-01 19 14829478 14829478 G A ZNF333 Missense_Mutation p.E447K 0.34 deleterious(0) possibly_damaging(0.57) TCGA-NC-A5HT-01 19 15918817 15918817 G T OR10H1 Missense_Mutation p.Q11K 0.34 deleterious(0.02) benign(0.005) TCGA-NC-A5HT-01 19 18186645 18186645 G A IL12RB1 Missense_Mutation p.A205V 0.24 tolerated(0.1) benign(0.399) TCGA-NC-A5HT-01 19 19327782 19327782 G A NCAN Nonsense_Mutation p.W7* 0.37 TCGA-NC-A5HT-01 19 19351429 19351429 A C NCAN Missense_Mutation p.T1143P 0.23 tolerated(0.06) probably_damaging(0.955) TCGA-NC-A5HT-01 19 21909631 21909631 T A ZNF100 Missense_Mutation p.N495Y 0.36 tolerated(0.1) benign(0.017) TCGA-NC-A5HT-01 19 21990608 21990608 T A ZNF43 Missense_Mutation p.N744I 0.26 tolerated(0.38) benign(0.081) TCGA-NC-A5HT-01 19 22271656 22271656 A T ZNF257 Missense_Mutation p.K368N 0.34 deleterious(0) benign(0.004) TCGA-NC-A5HT-01 19 22941029 22941029 C A ZNF99 Missense_Mutation p.G561V 0.24 deleterious(0.01) probably_damaging(0.995) TCGA-NC-A5HT-01 19 37309915 37309915 T C ZNF790 Missense_Mutation p.H444R 0.34 deleterious(0) probably_damaging(0.994) TCGA-NC-A5HT-01 19 37961252 37961252 A C ZNF570 5'UTR 0.31 TCGA-NC-A5HT-01 19 37961266 37961266 G T ZNF570 Missense_Mutation p.G4W 0.31 deleterious(0.01) possibly_damaging(0.868) TCGA-NC-A5HT-01 19 39522700 39522700 G C FBXO27 Silent p.G56G 0.20 TCGA-NC-A5HT-01 19 41183267 41183268 - TGT NUMBL In_Frame_Ins p.Q200dup 0.37 TCGA-NC-A5HT-01 19 42796597 42796597 T G CIC Missense_Mutation p.F1052V 0.08 possibly_damaging(0.879) TCGA-NC-A5HT-01 19 42879904 42879904 C T MEGF8 Silent p.S2438S 0.25 TCGA-NC-A5HT-01 19 49164927 49164927 C G NTN5 3'UTR 0.55 TCGA-NC-A5HT-01 19 49246730 49246730 G C IZUMO1 Missense_Mutation p.H157Q 0.31 deleterious(0) probably_damaging(0.92) TCGA-NC-A5HT-01 19 49254356 49254356 C A FUT1 Silent p.A61A 0.33 TCGA-NC-A5HT-01 19 50000837 50000837 G A RPS11 Missense_Mutation p.G70R 0.34 deleterious(0.02) possibly_damaging(0.596) TCGA-NC-A5HT-01 19 50666294 50666295 GC - IZUMO2 Frame_Shift_Del p.A53Rfs*46 0.27 TCGA-NC-A5HT-01 19 51022253 51022253 G T LRRC4B Missense_Mutation p.N239K 0.31 deleterious(0) probably_damaging(1) TCGA-NC-A5HT-01 19 52002793 52002793 A G SIGLEC12 Missense_Mutation p.L329P 0.39 deleterious(0) probably_damaging(0.996) TCGA-NC-A5HT-01 19 53762025 53762025 G T VN1R2 Missense_Mutation p.V133L 0.34 tolerated(0.08) benign(0.42) TCGA-NC-A5HT-01 19 53857328 53857328 G T ZNF845 3'UTR 0.50 TCGA-NC-A5HT-01 19 54444737 54444737 G T CACNG7 Silent p.V146V 0.35 TCGA-NC-A5HT-01 19 54617855 54617856 - T TFPT Frame_Shift_Ins p.A84Gfs*47 0.30 TCGA-NC-A5HT-01 19 55224669 55224669 C T LILRP2 RNA 0.40 TCGA-NC-A5HT-01 19 57175936 57175936 G T ZNF835 Missense_Mutation p.Q211K 0.26 tolerated(0.16) benign(0.381) TCGA-NC-A5HT-01 19 57175937 57175937 G T ZNF835 Silent p.T210T 0.26 TCGA-NC-A5HT-01 19 57327327 57327327 C G PEG3 Missense_Mutation p.R828T 0.45 deleterious(0.02) benign(0.09) TCGA-NC-A5HT-01 19 7797013 7797013 G T CLEC4G 5'UTR 0.34 TCGA-NC-A5HT-01 19 8188754 8188754 G A FBN3 Missense_Mutation p.P957L 0.28 tolerated(0.1) possibly_damaging(0.564) TCGA-NC-A5HT-01 19 9021079 9021079 G T MUC16 Missense_Mutation p.T12415N 0.25 possibly_damaging(0.839) TCGA-NC-A5HT-01 19 984368 984368 G T WDR18 Missense_Mutation p.M5I 0.27 tolerated(0.12) benign(0.001) TCGA-NC-A5HT-01 1 103483381 103483381 C G COL11A1 Missense_Mutation p.D470H 0.30 probably_damaging(0.999) TCGA-NC-A5HT-01 1 104297192 104297192 A C AMY1C Missense_Mutation p.Q317P 0.14 deleterious(0) probably_damaging(1) TCGA-NC-A5HT-01 1 10523562 10523562 C A DFFA Missense_Mutation p.R186L 0.33 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HT-01 1 114680339 114680339 G T SYT6 Silent p.T198T 0.46 TCGA-NC-A5HT-01 1 115258745 115258745 C G NRAS Missense_Mutation p.G13R 0.30 deleterious(0) possibly_damaging(0.534) TCGA-NC-A5HT-01 1 117695723 117695723 G T VTCN1 Silent p.I238I 0.29 TCGA-NC-A5HT-01 1 118537054 118537054 G T SPAG17 Nonsense_Mutation p.S1718* 0.32 TCGA-NC-A5HT-01 1 120166612 120166612 C A ZNF697 Missense_Mutation p.E118D 0.26 tolerated(0.11) benign(0.002) TCGA-NC-A5HT-01 1 120438136 120438136 C T ADAM30 Missense_Mutation p.R275K 0.24 tolerated(0.38) benign(0.166) TCGA-NC-A5HT-01 1 148932825 148932825 A T RP11-14N7.2 RNA 0.08 TCGA-NC-A5HT-01 1 150129105 150129105 G T PLEKHO1 Missense_Mutation p.A107S 0.38 deleterious(0.03) probably_damaging(0.983) TCGA-NC-A5HT-01 1 150445842 150445842 C G RPRD2 3'UTR 0.32 TCGA-NC-A5HT-01 1 152005124 152005124 G A S100A11 3'UTR 0.36 TCGA-NC-A5HT-01 1 15370529 15370529 G T KAZN Silent p.L200L 0.37 TCGA-NC-A5HT-01 1 153732865 153732865 G T INTS3 Missense_Mutation p.R439L 0.22 deleterious(0) probably_damaging(0.976) TCGA-NC-A5HT-01 1 155720325 155720325 G T GON4L 3'UTR 0.42 TCGA-NC-A5HT-01 1 156836770 156836770 T C NTRK1 Missense_Mutation p.L143P 0.26 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HT-01 1 157548279 157548279 C G FCRL4 Missense_Mutation p.G472R 0.28 deleterious(0.03) probably_damaging(0.976) TCGA-NC-A5HT-01 1 157660192 157660192 C A FCRL3 Missense_Mutation p.D515Y 0.34 deleterious(0) possibly_damaging(0.447) TCGA-NC-A5HT-01 1 158390539 158390539 C A OR10K2 Missense_Mutation p.G40C 0.40 tolerated(0.09) probably_damaging(0.933) TCGA-NC-A5HT-01 1 158576712 158576712 G A OR10Z1 Missense_Mutation p.V162I 0.41 tolerated(0.28) benign(0.038) TCGA-NC-A5HT-01 1 158584047 158584047 A C SPTA1 Missense_Mutation p.Y2280D 0.44 deleterious(0) possibly_damaging(0.878) TCGA-NC-A5HT-01 1 159683271 159683271 G T CRP 3'UTR 0.39 TCGA-NC-A5HT-01 1 172411049 172411049 T A PIGC Silent p.S238S 0.31 TCGA-NC-A5HT-01 1 173931088 173931088 T C RC3H1 Silent p.P659P 0.34 TCGA-NC-A5HT-01 1 176915172 176915172 C T ASTN1 Silent p.G713G 0.27 TCGA-NC-A5HT-01 1 183711274 183711274 C T RGL1 5'UTR 0.27 TCGA-NC-A5HT-01 1 190068134 190068134 G C BRINP3 Missense_Mutation p.L439V 0.31 tolerated(0.2) benign(0.001) TCGA-NC-A5HT-01 1 196303080 196303080 C T KCNT2 Missense_Mutation p.V632I 0.25 tolerated(0.06) benign(0.09) TCGA-NC-A5HT-01 1 207647191 207647191 G T CR2 Missense_Mutation p.G734V 0.22 tolerated(0.47) possibly_damaging(0.541) TCGA-NC-A5HT-01 1 215932053 215932053 C A USH2A Missense_Mutation p.S3758I 0.38 benign(0.128) TCGA-NC-A5HT-01 1 223176859 223176859 A - DISP1 Frame_Shift_Del p.V709Yfs*20 0.25 TCGA-NC-A5HT-01 1 231906773 231906773 G A DISC1 Missense_Mutation p.G531S 0.18 tolerated(0.9) benign(0.023) TCGA-NC-A5HT-01 1 236908035 236908035 G T ACTN2 Missense_Mutation p.Q455H 0.18 tolerated(0.06) probably_damaging(0.999) TCGA-NC-A5HT-01 1 236908036 236908036 G A ACTN2 Missense_Mutation p.D456N 0.17 deleterious(0.05) possibly_damaging(0.884) TCGA-NC-A5HT-01 1 238090350 238090350 G A RP11-193H5.1 RNA 0.31 TCGA-NC-A5HT-01 1 24398482 24398482 A T MYOM3 Missense_Mutation p.L997Q 0.34 deleterious(0.02) possibly_damaging(0.873) TCGA-NC-A5HT-01 1 248201474 248201474 T A OR2L2 5'UTR 0.36 TCGA-NC-A5HT-01 1 248402402 248402402 C A OR2M4 Missense_Mutation p.P58T 0.28 deleterious(0) benign(0.356) TCGA-NC-A5HT-01 1 26149444 26149444 G T MTFR1L Intron 0.29 TCGA-NC-A5HT-01 1 28904191 28904192 GA - TRNAU1AP 3'UTR 0.26 TCGA-NC-A5HT-01 1 2938365 2938365 G A ACTRT2 Missense_Mutation p.V39M 0.25 deleterious(0.03) possibly_damaging(0.647) TCGA-NC-A5HT-01 1 3319377 3319377 C G PRDM16 Missense_Mutation p.D233E 0.35 tolerated(1) benign(0.007) TCGA-NC-A5HT-01 1 3431172 3431172 G A MEGF6 Silent p.L265L 0.33 TCGA-NC-A5HT-01 1 37315953 37315953 C A GRIK3 Missense_Mutation p.D429Y 0.37 deleterious(0.01) probably_damaging(0.927) TCGA-NC-A5HT-01 1 43907011 43907011 G C SZT2 Missense_Mutation p.E2434Q 0.35 tolerated(0.11) probably_damaging(0.948) TCGA-NC-A5HT-01 1 47685563 47685563 C T TAL1 Silent p.A275A 0.35 TCGA-NC-A5HT-01 1 49056568 49056568 T G AGBL4 Missense_Mutation p.E347D 0.43 tolerated(0.43) benign(0.075) TCGA-NC-A5HT-01 1 55050363 55050363 G T ACOT11 Silent p.R23R 0.36 TCGA-NC-A5HT-01 1 70504103 70504103 C T LRRC7 Missense_Mutation p.H828Y 0.43 tolerated_low_confidence(0.83) benign(0.034) TCGA-NC-A5HT-01 1 76262742 76262742 C A MSH4 Silent p.R24R 0.32 TCGA-NC-A5HT-01 1 86622031 86622031 C - COL24A1 Frame_Shift_Del p.A17Qfs*26 0.31 TCGA-NC-A5HT-01 20 2778920 2778920 G A CPXM1 Silent p.G156G 0.32 TCGA-NC-A5HT-01 20 30898837 30898837 A G KIF3B Silent p.E419E 0.31 TCGA-NC-A5HT-01 20 31619453 31619453 C A BPIFB6 5'Flank 0.37 TCGA-NC-A5HT-01 20 32336731 32336731 C G ZNF341 Missense_Mutation p.I114M 0.24 deleterious(0) possibly_damaging(0.503) TCGA-NC-A5HT-01 20 32357951 32357951 A G ZNF341 Missense_Mutation p.E485G 0.07 deleterious(0.03) benign(0.243) TCGA-NC-A5HT-01 20 33077097 33077097 G A ITCH Missense_Mutation p.R748Q 0.29 deleterious(0) possibly_damaging(0.799) TCGA-NC-A5HT-01 20 40739023 40739023 C A PTPRT Missense_Mutation p.Q1068H 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-NC-A5HT-01 20 49626578 49626578 C G KCNG1 Missense_Mutation p.D100H 0.24 deleterious(0) probably_damaging(0.98) TCGA-NC-A5HT-01 20 57829327 57829327 G A ZNF831 Silent p.G1521G 0.24 TCGA-NC-A5HT-01 20 58564013 58564015 GAG - CDH26 In_Frame_Del p.E361del 0.46 TCGA-NC-A5HT-01 21 10862761 10862761 C G IGHV1OR21-1 Silent p.S19S 0.22 TCGA-NC-A5HT-01 21 10908869 10908869 G C TPTE Missense_Mutation p.C492W 0.18 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HT-01 21 31654818 31654818 G T KRTAP24-1 Missense_Mutation p.L145I 0.27 tolerated(0.19) possibly_damaging(0.874) TCGA-NC-A5HT-01 21 40794960 40794960 A T LCA5L Missense_Mutation p.L260H 0.35 deleterious(0) probably_damaging(1) TCGA-NC-A5HT-01 21 45825143 45825143 G T TRPM2 Missense_Mutation p.R886M 0.29 deleterious(0) probably_damaging(0.969) TCGA-NC-A5HT-01 22 24199207 24199207 T C SLC2A11 Intron 0.24 TCGA-NC-A5HT-01 22 26937461 26937461 G A TPST2 Missense_Mutation p.R46W 0.06 deleterious(0.03) benign(0.28) TCGA-NC-A5HT-01 22 32072845 32072845 T C PRR14L 3'Flank 0.33 TCGA-NC-A5HT-01 22 33712134 33712134 T C LARGE Missense_Mutation p.Y463C 0.35 deleterious(0.05) probably_damaging(0.935) TCGA-NC-A5HT-01 22 36863832 36863832 C A TXN2 3'UTR 0.31 TCGA-NC-A5HT-01 22 37602734 37602734 A C SSTR3 Missense_Mutation p.M370R 0.45 tolerated(0.28) benign(0) TCGA-NC-A5HT-01 22 38055211 38055211 C G PDXP Missense_Mutation p.P141R 0.43 deleterious(0.01) benign(0.007) TCGA-NC-A5HT-01 22 42607327 42607327 G A TCF20 Missense_Mutation p.P1329S 0.30 benign(0.027) TCGA-NC-A5HT-01 2 100046369 100046369 C A REV1 Missense_Mutation p.A494S 0.35 tolerated(0.56) benign(0.278) TCGA-NC-A5HT-01 2 107041107 107041107 G A RGPD3 Silent p.L1106L 0.32 TCGA-NC-A5HT-01 2 131103685 131103685 G T IMP4 Missense_Mutation p.R230L 0.32 deleterious(0) probably_damaging(1) TCGA-NC-A5HT-01 2 136567102 136567102 G T LCT Missense_Mutation p.P939T 0.34 deleterious(0.04) possibly_damaging(0.702) TCGA-NC-A5HT-01 2 152324528 152324528 C G RIF1 Silent p.S2205S 0.25 TCGA-NC-A5HT-01 2 166606314 166606314 C A GALNT3 Missense_Mutation p.A573S 0.36 tolerated(0.74) benign(0.041) TCGA-NC-A5HT-01 2 166850773 166850773 C G SCN1A Missense_Mutation p.V1579L 0.38 tolerated(0.23) possibly_damaging(0.758) TCGA-NC-A5HT-01 2 167284443 167284443 C T SCN7A Missense_Mutation p.R903H 0.46 deleterious(0.03) benign(0.04) TCGA-NC-A5HT-01 2 169718510 169718510 C T NOSTRIN Silent p.A502A 0.37 TCGA-NC-A5HT-01 2 176803080 176803081 GA - KIAA1715 Frame_Shift_Del p.H282* 0.26 TCGA-NC-A5HT-01 2 179438204 179438204 G A TTN Missense_Mutation p.P24219S 0.36 TCGA-NC-A5HT-01 2 179463645 179463645 C T TTN Nonsense_Mutation p.W18931* 0.41 TCGA-NC-A5HT-01 2 185803529 185803529 C G ZNF804A Missense_Mutation p.P1136A 0.37 deleterious(0.01) probably_damaging(0.986) TCGA-NC-A5HT-01 2 197990590 197990590 G T ANKRD44 Missense_Mutation p.H145N 0.29 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HT-01 2 198353065 198353065 G A HSPD1 Missense_Mutation p.P456S 0.27 tolerated(0.16) benign(0.345) TCGA-NC-A5HT-01 2 200797669 200797669 A G TYW5 3'UTR 0.25 TCGA-NC-A5HT-01 2 209195399 209195399 G T PIKFYVE Missense_Mutation p.W1315L 0.35 deleterious(0.01) probably_damaging(0.912) TCGA-NC-A5HT-01 2 212251775 212251775 T A ERBB4 Missense_Mutation p.Q1095L 0.35 tolerated(0.21) benign(0.079) TCGA-NC-A5HT-01 2 212426762 212426762 C G ERBB4 Missense_Mutation p.G785R 0.35 deleterious(0) probably_damaging(1) TCGA-NC-A5HT-01 2 222436949 222436949 A - EPHA4 Frame_Shift_Del p.F7Sfs*40 0.28 TCGA-NC-A5HT-01 2 227896759 227896759 G A COL4A4 Missense_Mutation p.P1240L 0.31 unknown(0) TCGA-NC-A5HT-01 2 233274498 233274498 G T ALPPL2 Silent p.A505A 0.32 TCGA-NC-A5HT-01 2 234229444 234229444 G A SAG Missense_Mutation p.S117N 0.36 tolerated(0.38) benign(0.002) TCGA-NC-A5HT-01 2 26029201 26029201 G T ASXL2 Missense_Mutation p.T50N 0.39 deleterious(0) probably_damaging(0.987) TCGA-NC-A5HT-01 2 44428709 44428709 G C PPM1B Missense_Mutation p.R124T 0.09 tolerated(0.34) benign(0.01) TCGA-NC-A5HT-01 2 71044003 71044003 C T CLEC4F Silent p.R170R 0.35 TCGA-NC-A5HT-01 2 79348690 79348690 C A REG1A Missense_Mutation p.Q23K 0.30 tolerated(0.08) benign(0.042) TCGA-NC-A5HT-01 2 80530190 80530190 A G LRRTM1 Missense_Mutation p.L252P 0.29 deleterious(0.03) probably_damaging(0.997) TCGA-NC-A5HT-01 2 85536352 85536352 C T TCF7L1 Missense_Mutation p.R512W 0.33 tolerated_low_confidence(0.09) probably_damaging(0.993) TCGA-NC-A5HT-01 2 90193333 90193333 G T IGKV1D-13 Missense_Mutation p.S87I 0.65 deleterious(0) possibly_damaging(0.546) TCGA-NC-A5HT-01 2 96809601 96809601 C - DUSP2 Frame_Shift_Del p.Q303Sfs*80 0.26 TCGA-NC-A5HT-01 2 99162464 99162464 G C INPP4A Missense_Mutation p.D328H 0.44 deleterious(0) probably_damaging(0.924) TCGA-NC-A5HT-01 3 108719464 108719464 A G MORC1 Silent p.F709F 0.18 TCGA-NC-A5HT-01 3 111700772 111700772 C G ABHD10 Missense_Mutation p.A95G 0.41 deleterious(0.01) probably_damaging(0.985) TCGA-NC-A5HT-01 3 113503180 113503180 G T ATP6V1A Silent p.S107S 0.32 TCGA-NC-A5HT-01 3 113737606 113737606 C A KIAA1407 Missense_Mutation p.R361L 0.32 deleterious(0) probably_damaging(0.912) TCGA-NC-A5HT-01 3 115395373 115395373 C A GAP43 Missense_Mutation p.P218T 0.32 deleterious(0.03) probably_damaging(0.998) TCGA-NC-A5HT-01 3 120998764 120998765 - A STXBP5L Frame_Shift_Ins p.P692Tfs*22 0.25 TCGA-NC-A5HT-01 3 122436936 122436936 C A PARP14 Missense_Mutation p.P1340Q 0.29 deleterious(0.05) possibly_damaging(0.461) TCGA-NC-A5HT-01 3 122514153 122514153 C G DIRC2 Silent p.P38P 0.46 TCGA-NC-A5HT-01 3 129292471 129292471 C T PLXND1 Missense_Mutation p.E935K 0.30 tolerated(0.76) benign(0.008) TCGA-NC-A5HT-01 3 137822430 137822430 C T DZIP1L Silent p.E128E 0.29 TCGA-NC-A5HT-01 3 137849700 137849700 C T A4GNT Nonsense_Mutation p.W133* 0.36 TCGA-NC-A5HT-01 3 141299239 141299239 C T RASA2 Silent p.L540L 0.37 TCGA-NC-A5HT-01 3 142171968 142171968 A C ATR Splice_Site p.X2587_splice 0.30 TCGA-NC-A5HT-01 3 145917772 145917772 T G PLSCR4 Missense_Mutation p.Q151P 0.38 deleterious(0) probably_damaging(1) TCGA-NC-A5HT-01 3 151531996 151531996 G T AADAC Missense_Mutation p.A16S 0.14 deleterious(0.03) benign(0.165) TCGA-NC-A5HT-01 3 157146224 157146224 G A VEPH1 Missense_Mutation p.P195S 0.11 deleterious(0.03) benign(0.24) TCGA-NC-A5HT-01 3 15720808 15720808 C A ANKRD28 Missense_Mutation p.R824I 0.34 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HT-01 3 164714550 164714550 T C SI Silent p.E1517E 0.18 TCGA-NC-A5HT-01 3 169504423 169504423 G A MYNN Missense_Mutation p.G597E 0.58 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-NC-A5HT-01 3 170204053 170204053 A T SLC7A14 Silent p.A288A 0.09 TCGA-NC-A5HT-01 3 170611148 170611148 T A EIF5A2 3'UTR 0.16 TCGA-NC-A5HT-01 3 187416709 187416709 G T RTP2 Silent p.G85G 0.38 TCGA-NC-A5HT-01 3 195453008 195453008 G A MUC20 Missense_Mutation p.A512T 0.17 tolerated(0.11) unknown(0) TCGA-NC-A5HT-01 3 36874472 36874472 C T TRANK1 Missense_Mutation p.C2157Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HT-01 3 39942280 39942280 C G MYRIP Intron 0.34 TCGA-NC-A5HT-01 3 42265136 42265136 G T TRAK1 Missense_Mutation p.M923I 0.36 deleterious(0.02) probably_damaging(0.943) TCGA-NC-A5HT-01 3 48482015 48482015 A C TMA7 Missense_Mutation p.K46T 0.27 deleterious(0.04) unknown(0) TCGA-NC-A5HT-01 3 49020379 49020379 G A ARIH2 Nonsense_Mutation p.W459* 0.45 TCGA-NC-A5HT-01 3 51864504 51864504 G T IQCF3 Missense_Mutation p.R51M 0.34 deleterious(0) probably_damaging(0.988) TCGA-NC-A5HT-01 3 51864505 51864505 G T IQCF3 Missense_Mutation p.R51S 0.34 deleterious(0) probably_damaging(0.975) TCGA-NC-A5HT-01 3 54912971 54912971 G A CACNA2D3 Intron 0.62 TCGA-NC-A5HT-01 3 64133219 64133219 G T PRICKLE2 Missense_Mutation p.P316H 0.30 deleterious(0.02) possibly_damaging(0.764) TCGA-NC-A5HT-01 3 69171402 69171402 G A LMOD3 Missense_Mutation p.P46S 0.26 tolerated(0.3) probably_damaging(1) TCGA-NC-A5HT-01 3 74347188 74347188 T A CNTN3 Missense_Mutation p.Y774F 0.36 tolerated(1) benign(0.133) TCGA-NC-A5HT-01 3 7782196 7782196 G C GRM7 3'UTR 0.23 TCGA-NC-A5HT-01 4 100518273 100518273 T A MTTP Missense_Mutation p.L320H 0.57 deleterious(0) probably_damaging(1) TCGA-NC-A5HT-01 4 111463994 111463994 A C ENPEP Missense_Mutation p.E632A 0.13 tolerated(0.23) possibly_damaging(0.61) TCGA-NC-A5HT-01 4 119951690 119951690 G A SYNPO2 Missense_Mutation p.R587K 0.79 tolerated(0.12) possibly_damaging(0.668) TCGA-NC-A5HT-01 4 129012278 129012278 C T LARP1B Nonsense_Mutation p.R161* 0.23 TCGA-NC-A5HT-01 4 13339764 13339764 G A HSP90AB2P RNA 0.32 TCGA-NC-A5HT-01 4 1377714 1377714 A - UVSSA Frame_Shift_Del p.V676Sfs*10 0.44 TCGA-NC-A5HT-01 4 139965941 139965941 C G CCRN4L Missense_Mutation p.F203L 0.66 tolerated(0.37) benign(0.139) TCGA-NC-A5HT-01 4 157732156 157732156 C A PDGFC Nonsense_Mutation p.E110* 0.28 TCGA-NC-A5HT-01 4 159161552 159161552 C T TMEM144 Missense_Mutation p.P262S 0.53 tolerated(0.35) benign(0.264) TCGA-NC-A5HT-01 4 165961273 165961273 C A TRIM60 Missense_Mutation p.P17T 0.17 deleterious(0.02) probably_damaging(0.926) TCGA-NC-A5HT-01 4 170077705 170077706 - TT SH3RF1 Frame_Shift_Ins p.H173Qfs*38 0.19 TCGA-NC-A5HT-01 4 22737773 22737773 C T GBA3 Silent p.F76F 0.32 TCGA-NC-A5HT-01 4 24801544 24801544 C T SOD3 Missense_Mutation p.P134L 0.38 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HT-01 4 27010090 27010090 C G STIM2 Missense_Mutation p.T405S 0.37 tolerated(0.09) probably_damaging(0.986) TCGA-NC-A5HT-01 4 39465185 39465185 G T LIAS Missense_Mutation p.W118L 0.23 deleterious(0) probably_damaging(0.931) TCGA-NC-A5HT-01 4 44176970 44176970 G T KCTD8 Missense_Mutation p.S420Y 0.32 deleterious(0.02) possibly_damaging(0.601) TCGA-NC-A5HT-01 4 46060262 46060262 T A GABRG1 Missense_Mutation p.K296N 0.39 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HT-01 4 46264080 46264080 C A GABRA2 Missense_Mutation p.A308S 0.37 tolerated(1) probably_damaging(0.913) TCGA-NC-A5HT-01 4 46930556 46930556 G A GABRA4 Missense_Mutation p.L451F 0.37 tolerated_low_confidence(0.56) benign(0.166) TCGA-NC-A5HT-01 4 52861157 52861157 C A LRRC66 Silent p.L677L 0.31 TCGA-NC-A5HT-01 4 55970938 55970938 C T KDR Missense_Mutation p.S620N 0.33 tolerated(0.13) benign(0.008) TCGA-NC-A5HT-01 4 57182417 57182417 C A KIAA1211 Silent p.R917R 0.32 TCGA-NC-A5HT-01 4 5749989 5749989 G A EVC Missense_Mutation p.A352T 0.30 tolerated(0.34) benign(0.02) TCGA-NC-A5HT-01 4 65180439 65180439 G A TECRL Missense_Mutation p.L160F 0.31 deleterious(0) benign(0.124) TCGA-NC-A5HT-01 4 73149098 73149098 C G ADAMTS3 Missense_Mutation p.D1125H 0.36 tolerated_low_confidence(0.14) benign(0.001) TCGA-NC-A5HT-01 4 79204122 79204122 G A FRAS1 Splice_Site p.X419_splice 0.33 TCGA-NC-A5HT-01 4 83276525 83276525 T G HNRNPD Silent p.R344R 0.18 TCGA-NC-A5HT-01 4 89192219 89192219 C A PPM1K Intron 0.11 TCGA-NC-A5HT-01 4 94006166 94006166 G T GRID2 Missense_Mutation p.G89C 0.26 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HT-01 5 101726751 101726751 T A SLCO6A1 Splice_Site p.X605_splice 0.55 TCGA-NC-A5HT-01 5 126770498 126770498 G C MEGF10 Missense_Mutation p.A654P 0.64 tolerated(0.5) probably_damaging(0.977) TCGA-NC-A5HT-01 5 140256361 140256361 T A PCDHA12 Missense_Mutation p.L435Q 0.61 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-NC-A5HT-01 5 140774079 140774079 C G PCDHGA8 Missense_Mutation p.L567V 0.51 deleterious_low_confidence(0.05) benign(0.135) TCGA-NC-A5HT-01 5 150052039 150052039 C A MYOZ3 Missense_Mutation p.P188T 0.73 tolerated(0.39) benign(0.315) TCGA-NC-A5HT-01 5 150922433 150922433 C A FAT2 Missense_Mutation p.R2752M 0.59 possibly_damaging(0.863) TCGA-NC-A5HT-01 5 174156559 174156559 G T MSX2 Silent p.V259V 0.63 TCGA-NC-A5HT-01 5 176707656 176707656 T A NSD1 Missense_Mutation p.C1905S 0.55 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HT-01 5 179755327 179755327 G T GFPT2 Missense_Mutation p.F182L 0.49 deleterious(0.01) benign(0.33) TCGA-NC-A5HT-01 5 23527763 23527763 G A PRDM9 Missense_Mutation p.G856R 0.21 tolerated(0.17) possibly_damaging(0.888) TCGA-NC-A5HT-01 5 24535913 24535913 A C CDH10 Missense_Mutation p.V182G 0.22 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HT-01 5 37049376 37049376 A G NIPBL Silent p.L2309L 0.51 TCGA-NC-A5HT-01 5 41172363 41172363 T A C6 Missense_Mutation p.R419W 0.23 deleterious(0.01) possibly_damaging(0.866) TCGA-NC-A5HT-01 5 43412408 43412408 C T CCL28 Missense_Mutation p.R4K 0.13 tolerated(1) benign(0.003) TCGA-NC-A5HT-01 5 43644761 43644761 C G NNT Missense_Mutation p.Q383E 0.42 deleterious(0) benign(0.32) TCGA-NC-A5HT-01 5 45262525 45262525 G T HCN1 Missense_Mutation p.A724D 0.25 deleterious_low_confidence(0.02) probably_damaging(0.99) TCGA-NC-A5HT-01 5 76003089 76003089 A G IQGAP2 Missense_Mutation p.N1560S 0.72 deleterious(0) probably_damaging(0.979) TCGA-NC-A5HT-01 5 7773159 7773159 C T ADCY2 Silent p.L777L 0.27 TCGA-NC-A5HT-01 5 82818088 82818088 C T VCAN Silent p.D1321D 0.55 TCGA-NC-A5HT-01 6 110620168 110620168 G T METTL24 Missense_Mutation p.T248N 0.65 deleterious(0.02) probably_damaging(0.954) TCGA-NC-A5HT-01 6 129498894 129498894 T G LAMA2 Silent p.G450G 0.68 TCGA-NC-A5HT-01 6 147124795 147124800 AATCTT - ADGB Intron 0.46 TCGA-NC-A5HT-01 6 149772152 149772152 G T ZC3H12D Missense_Mutation p.H417Q 0.85 tolerated(0.28) benign(0.031) TCGA-NC-A5HT-01 6 150023014 150023015 - T LATS1 Frame_Shift_Ins p.N83Kfs*9 0.38 TCGA-NC-A5HT-01 6 160998324 160998324 G A LPA Missense_Mutation p.P1492L 0.89 deleterious_low_confidence(0) benign(0.019) TCGA-NC-A5HT-01 6 16327473 16327473 C A ATXN1 Nonsense_Mutation p.E357* 0.26 TCGA-NC-A5HT-01 6 28227320 28227320 G T NKAPL Missense_Mutation p.E57D 0.22 tolerated(0.45) unknown(0) TCGA-NC-A5HT-01 6 38875813 38875813 C A DNAH8 Missense_Mutation p.H2927N 0.50 benign(0.266) TCGA-NC-A5HT-01 6 43038501 43038501 C A KLC4 Silent p.G369G 0.34 TCGA-NC-A5HT-01 6 44218929 44218929 G T HSP90AB1 Nonsense_Mutation p.E368* 0.47 TCGA-NC-A5HT-01 6 45514792 45514792 C A RUNX2 Missense_Mutation p.T439N 0.18 deleterious(0.01) probably_damaging(0.91) TCGA-NC-A5HT-01 6 47847577 47847577 C T PTCHD4 Missense_Mutation p.D335N 0.32 deleterious(0) probably_damaging(0.992) TCGA-NC-A5HT-01 6 57512603 57512603 C A PRIM2 3'UTR 0.09 TCGA-NC-A5HT-01 6 71570103 71570103 C T SMAP1 3'UTR 0.39 TCGA-NC-A5HT-01 6 83075864 83075864 A T TPBG Missense_Mutation p.M396L 0.54 tolerated(0.17) benign(0.175) TCGA-NC-A5HT-01 6 83921804 83921804 C G ME1 Missense_Mutation p.D520H 0.15 tolerated(0.27) benign(0.002) TCGA-NC-A5HT-01 6 84563453 84563453 C A RIPPLY2 Silent p.G45G 0.23 TCGA-NC-A5HT-01 7 100086757 100086757 G T NYAP1 Silent p.T471T 0.27 TCGA-NC-A5HT-01 7 100348354 100348354 C T ZAN Silent p.F452F 0.45 TCGA-NC-A5HT-01 7 103155722 103155722 C T RELN Missense_Mutation p.A2677T 0.31 tolerated_low_confidence(0.47) probably_damaging(0.984) TCGA-NC-A5HT-01 7 106509685 106509685 C A PIK3CG Missense_Mutation p.A560D 0.22 tolerated(0.31) benign(0.008) TCGA-NC-A5HT-01 7 11521434 11521434 C A THSD7A Silent p.L666L 0.51 TCGA-NC-A5HT-01 7 121653495 121653495 T G PTPRZ1 Missense_Mutation p.S1465R 0.16 tolerated_low_confidence(0.14) benign(0.006) TCGA-NC-A5HT-01 7 123143126 123143126 C A IQUB Missense_Mutation p.D247Y 0.23 deleterious(0.04) possibly_damaging(0.615) TCGA-NC-A5HT-01 7 130364035 130364035 A G TSGA13 Silent p.S115S 0.39 TCGA-NC-A5HT-01 7 136700483 136700483 G T CHRM2 Missense_Mutation p.A291S 0.33 tolerated(0.9) benign(0.016) TCGA-NC-A5HT-01 7 142460742 142460742 C A PRSS1 Silent p.V205V 0.27 TCGA-NC-A5HT-01 7 142574219 142574219 A C TRPV6 Missense_Mutation p.V235G 0.38 deleterious(0) possibly_damaging(0.863) TCGA-NC-A5HT-01 7 143453274 143453274 G C CTAGE6 Missense_Mutation p.T493R 0.18 deleterious(0.04) possibly_damaging(0.681) TCGA-NC-A5HT-01 7 148800763 148800763 C A ZNF425 Missense_Mutation p.V734L 0.29 tolerated(1) benign(0.002) TCGA-NC-A5HT-01 7 39247132 39247132 C A POU6F2 Missense_Mutation p.P142T 0.51 deleterious(0) probably_damaging(0.991) TCGA-NC-A5HT-01 7 47920347 47920347 A T PKD1L1 Missense_Mutation p.Y1167N 0.50 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HT-01 7 72849131 72849131 G A FZD9 Missense_Mutation p.R265H 0.33 deleterious(0) probably_damaging(0.938) TCGA-NC-A5HT-01 7 72850111 72850111 T C FZD9 Nonstop_Mutation p.*592Qext*24 0.34 TCGA-NC-A5HT-01 7 73008308 73008308 G T MLXIPL Missense_Mutation p.L816M 0.33 deleterious(0) probably_damaging(0.999) TCGA-NC-A5HT-01 7 87563847 87563847 G C ADAM22 Missense_Mutation p.A23P 0.12 deleterious_low_confidence(0.04) benign(0.221) TCGA-NC-A5HT-01 7 94915600 94915600 C A PPP1R9A Missense_Mutation p.P1231Q 0.32 deleterious(0) possibly_damaging(0.522) TCGA-NC-A5HT-01 8 100133520 100133520 C T VPS13B Silent p.S351S 0.15 TCGA-NC-A5HT-01 8 104927819 104927819 C A RIMS2 Missense_Mutation p.P637T 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-NC-A5HT-01 8 104955111 104955111 A G RIMS2 Silent p.P886P 0.13 TCGA-NC-A5HT-01 8 113303841 113303841 C A CSMD3 Missense_Mutation p.V2958L 0.23 tolerated(0.08) possibly_damaging(0.51) TCGA-NC-A5HT-01 8 113326206 113326206 C A CSMD3 Missense_Mutation p.G2542V 0.15 deleterious(0.01) benign(0.371) TCGA-NC-A5HT-01 8 113657348 113657348 G T CSMD3 Silent p.T1100T 0.23 TCGA-NC-A5HT-01 8 118159394 118159394 T A SLC30A8 Splice_Site p.X91_splice 0.57 TCGA-NC-A5HT-01 8 121457417 121457417 T C MRPL13 5'UTR 0.24 TCGA-NC-A5HT-01 8 133037015 133037015 G A OC90 Nonsense_Mutation p.Q383* 0.26 TCGA-NC-A5HT-01 8 144776269 144776269 G A ZNF707 Missense_Mutation p.E229K 0.24 deleterious(0) probably_damaging(0.985) TCGA-NC-A5HT-01 8 145066090 145066090 G A GRINA Silent p.T179T 0.21 TCGA-NC-A5HT-01 8 42611872 42611872 G A CHRNA6 Missense_Mutation p.S157F 0.34 deleterious(0.01) probably_damaging(1) TCGA-NC-A5HT-01 8 52321641 52321641 C T PXDNL Missense_Mutation p.R848Q 0.18 deleterious(0) benign(0.046) TCGA-NC-A5HT-01 8 52567260 52567260 A T PXDNL Missense_Mutation p.N75K 0.67 deleterious(0.03) benign(0.11) TCGA-NC-A5HT-01 8 68981372 68981372 G T PREX2 Splice_Site p.X481_splice 0.23 TCGA-NC-A5HT-01 8 77775727 77775727 C A ZFHX4 Silent p.G3259G 0.17 TCGA-NC-A5HT-01 8 85774623 85774623 G A RALYL Missense_Mutation p.G182E 0.21 tolerated(0.41) possibly_damaging(0.823) TCGA-NC-A5HT-01 8 87235278 87235278 G A SLC7A13 Missense_Mutation p.P247L 0.18 deleterious(0.02) possibly_damaging(0.457) TCGA-NC-A5HT-01 8 87520834 87520834 G A RMDN1 Nonsense_Mutation p.R6* 0.22 TCGA-NC-A5HT-01 8 88218266 88218266 C A CNBD1 Missense_Mutation p.F159L 0.20 tolerated(0.25) benign(0.001) TCGA-NC-A5HT-01 8 88218267 88218267 C A CNBD1 Missense_Mutation p.L160M 0.19 tolerated(0.17) possibly_damaging(0.528) TCGA-NC-A5HT-01 8 92983007 92983007 C T RUNX1T1 Missense_Mutation p.R484Q 0.58 tolerated(0.51) benign(0.372) TCGA-NC-A5HT-01 9 101909935 101909935 G A TGFBR1 Splice_Site p.X419_splice 0.58 TCGA-NC-A5HT-01 9 107516840 107516840 G T NIPSNAP3A Nonsense_Mutation p.E147* 0.46 TCGA-NC-A5HT-01 9 115421825 115421825 C A KIAA1958 Missense_Mutation p.Q543K 0.31 tolerated(1) benign(0.001) TCGA-NC-A5HT-01 9 115421826 115421826 A T KIAA1958 Missense_Mutation p.Q543L 0.31 deleterious(0) benign(0.012) TCGA-NC-A5HT-01 9 123550449 123550449 C A FBXW2 Missense_Mutation p.D30Y 0.60 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HT-01 9 125424727 125424727 C A OR1L1 Missense_Mutation p.L245I 0.52 deleterious(0.03) possibly_damaging(0.764) TCGA-NC-A5HT-01 9 138641960 138641960 T G KCNT1 Missense_Mutation p.Y91D 0.68 deleterious(0) possibly_damaging(0.84) TCGA-NC-A5HT-01 9 139913415 139913415 G C ABCA2 Silent p.L554L 0.26 TCGA-NC-A5HT-01 9 23701557 23701557 T C ELAVL2 Missense_Mutation p.E178G 0.04 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HT-01 9 33442492 33442492 C A AQP3 Missense_Mutation p.V173L 0.47 tolerated(0.39) benign(0.159) TCGA-NC-A5HT-01 9 37740483 37740483 G C FRMPD1 Missense_Mutation p.S653T 0.54 tolerated(0.08) benign(0.169) TCGA-NC-A5HT-01 9 71840262 71840262 T C TJP2 Missense_Mutation p.M363T 0.53 deleterious(0) possibly_damaging(0.791) TCGA-NC-A5HT-01 9 73477879 73477879 G T TRPM3 Missense_Mutation p.T136K 0.50 deleterious(0) probably_damaging(0.997) TCGA-NC-A5HT-01 9 8331668 8331668 G T PTPRD Silent p.S1816S 0.57 TCGA-NC-A5HT-01 9 84605942 84605942 T A SPATA31D1 Missense_Mutation p.L186Q 0.55 tolerated(0.08) possibly_damaging(0.843) TCGA-NC-A5HT-01 9 90502774 90502774 C T SPATA31E1 Silent p.G1124G 0.56 TCGA-NC-A5HT-01 9 95277055 95277055 G A ECM2 Silent p.S304S 0.60 TCGA-NC-A5HT-01 X 106186227 106186227 C T MORC4 Missense_Mutation p.A632T 0.62 tolerated(0.23) benign(0.069) TCGA-NC-A5HT-01 X 106843873 106843873 G C FRMPD3 Missense_Mutation p.Q901H 0.29 tolerated_low_confidence(0.38) benign(0.004) TCGA-NC-A5HT-01 X 1742047 1742047 T A ASMT Missense_Mutation p.C29S 0.41 deleterious(0.01) possibly_damaging(0.828) TCGA-NC-A5HT-01 X 53279921 53279921 C A IQSEC2 Missense_Mutation p.G613C 0.70 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-NC-A5HT-01 X 63412635 63412635 G A AMER1 Missense_Mutation p.R178C 0.52 deleterious(0) probably_damaging(0.998) TCGA-NC-A5HT-01 X 73965406 73965406 C G KIAA2022 Splice_Site p.X27_splice 0.47 TCGA-NC-A5HT-01 X 78011363 78011363 C A LPAR4 Missense_Mutation p.L333M 0.70 tolerated_low_confidence(0.14) benign(0.01) TCGA-NC-A5HT-01 X 84526358 84526358 G A ZNF711 Missense_Mutation p.D604N 0.67 tolerated(0.09) probably_damaging(1) TCGA-NK-A5CR-01 10 114192208 114192208 G A ZDHHC6 Silent p.F339F 0.15 TCGA-NK-A5CR-01 10 12867726 12867726 A T CAMK1D Intron 0.31 TCGA-NK-A5CR-01 10 12870821 12870821 G A CAMK1D Missense_Mutation p.G365R 0.38 tolerated_low_confidence(0.18) benign(0.102) TCGA-NK-A5CR-01 10 13701411 13701411 G A FRMD4A Missense_Mutation p.R660C 0.35 deleterious(0) probably_damaging(0.993) TCGA-NK-A5CR-01 10 27687688 27687688 G T PTCHD3 Silent p.I613I 0.32 TCGA-NK-A5CR-01 10 28032179 28032179 C T MKX Missense_Mutation p.G56S 0.43 tolerated_low_confidence(0.64) benign(0.009) TCGA-NK-A5CR-01 10 37431101 37431101 G T ANKRD30A Missense_Mutation p.V370L 0.29 tolerated(0.6) benign(0.027) TCGA-NK-A5CR-01 10 38126617 38126617 C A ZNF248 Missense_Mutation p.V56L 0.24 tolerated(0.08) benign(0.007) TCGA-NK-A5CR-01 10 55581544 55581544 C T PCDH15 3'UTR 0.71 TCGA-NK-A5CR-01 10 8006156 8006156 T G TAF3 Missense_Mutation p.L228R 0.31 deleterious(0.02) probably_damaging(0.943) TCGA-NK-A5CR-01 10 85984297 85984297 G A LRIT2 Silent p.Y228Y 0.55 TCGA-NK-A5CR-01 11 101785835 101785835 C A KIAA1377 5'UTR 0.75 TCGA-NK-A5CR-01 11 106888844 106888844 G T GUCY1A2 5'UTR 0.50 TCGA-NK-A5CR-01 11 109294687 109294687 C A C11orf87 Missense_Mutation p.R110S 0.45 tolerated(0.54) benign(0.095) TCGA-NK-A5CR-01 11 111594737 111594739 CAA - SIK2 In_Frame_Del p.Q889del 0.28 TCGA-NK-A5CR-01 11 120350788 120350788 G C ARHGEF12 Missense_Mutation p.V1296L 0.20 tolerated_low_confidence(0.48) benign(0.001) TCGA-NK-A5CR-01 11 123847410 123847410 G T OR10S1 Missense_Mutation p.P330H 0.30 tolerated_low_confidence(0.07) benign(0.002) TCGA-NK-A5CR-01 11 123893746 123893746 G A OR10G9 Silent p.A9A 0.29 TCGA-NK-A5CR-01 11 123894382 123894382 C A OR10G9 Silent p.V221V 0.41 TCGA-NK-A5CR-01 11 123909353 123909353 T A OR10G7 Missense_Mutation p.Y119F 0.16 deleterious(0.03) benign(0.029) TCGA-NK-A5CR-01 11 124765562 124765562 G A ROBO4 Missense_Mutation p.P276L 0.46 tolerated(0.09) benign(0.013) TCGA-NK-A5CR-01 11 125478108 125478108 T G STT3A Missense_Mutation p.F295L 0.53 deleterious(0.05) possibly_damaging(0.706) TCGA-NK-A5CR-01 11 12785888 12785888 C A TEAD1 Missense_Mutation p.P37T 0.24 deleterious(0.04) benign(0.406) TCGA-NK-A5CR-01 11 130340876 130340876 C G ADAMTS15 Silent p.T594T 0.18 TCGA-NK-A5CR-01 11 134254064 134254065 - G B3GAT1 Frame_Shift_Ins p.R44Pfs*17 0.24 TCGA-NK-A5CR-01 11 18320497 18320497 A T HPS5 Missense_Mutation p.C336S 0.14 tolerated(0.17) benign(0.113) TCGA-NK-A5CR-01 11 18751290 18751290 G T PTPN5 Missense_Mutation p.P469T 0.43 tolerated(0.11) probably_damaging(1) TCGA-NK-A5CR-01 11 22283841 22283841 A G ANO5 Silent p.E599E 0.42 TCGA-NK-A5CR-01 11 26484627 26484627 G T ANO3 Missense_Mutation p.D122Y 0.15 deleterious(0.05) probably_damaging(0.91) TCGA-NK-A5CR-01 11 35463097 35463097 C A PAMR1 Missense_Mutation p.S339I 0.47 deleterious(0.03) probably_damaging(0.915) TCGA-NK-A5CR-01 11 36248930 36248930 G T LDLRAD3 Silent p.A250A 0.21 TCGA-NK-A5CR-01 11 4661984 4661984 G T OR51D1 Missense_Mutation p.G322C 0.57 deleterious(0.04) possibly_damaging(0.695) TCGA-NK-A5CR-01 11 4661985 4661985 G C OR51D1 Missense_Mutation p.G322A 0.57 tolerated(0.28) benign(0.006) TCGA-NK-A5CR-01 11 49598349 49598349 G C RP11-707M1.1 RNA 0.46 TCGA-NK-A5CR-01 11 5068167 5068167 T A OR52J3 Missense_Mutation p.L138M 0.34 deleterious(0) probably_damaging(1) TCGA-NK-A5CR-01 11 51515578 51515578 C A OR4C46 Silent p.V99V 0.42 TCGA-NK-A5CR-01 11 55339669 55339669 G A OR4C16 Silent p.K22K 0.23 TCGA-NK-A5CR-01 11 55541203 55541203 C G OR5D13 Missense_Mutation p.S97C 0.38 tolerated(0.14) possibly_damaging(0.474) TCGA-NK-A5CR-01 11 55904486 55904487 - T OR8J3 Frame_Shift_Ins p.A237Sfs*35 0.11 TCGA-NK-A5CR-01 11 56258635 56258635 C A OR5M8 Missense_Mutation p.C71F 0.46 tolerated(0.08) benign(0.019) TCGA-NK-A5CR-01 11 5878145 5878146 - A OR52E8 Frame_Shift_Ins p.S263Ffs*10 0.46 TCGA-NK-A5CR-01 11 5905891 5905891 C T OR52E4 Silent p.D123D 0.15 TCGA-NK-A5CR-01 11 61897873 61897873 A C INCENP Missense_Mutation p.T292P 0.47 deleterious(0) benign(0.184) TCGA-NK-A5CR-01 11 62677871 62677871 C T CHRM1 Silent p.G234G 0.21 TCGA-NK-A5CR-01 11 66631420 66631420 C T PC Missense_Mutation p.R398Q 0.14 deleterious(0.02) possibly_damaging(0.647) TCGA-NK-A5CR-01 11 73765651 73765651 C T C2CD3 Splice_Site p.X1719_splice 0.21 TCGA-NK-A5CR-01 11 7673022 7673022 G C PPFIBP2 Missense_Mutation p.E795Q 0.27 deleterious(0) benign(0.207) TCGA-NK-A5CR-01 11 77301386 77301386 G A AQP11 Missense_Mutation p.G117S 0.20 tolerated(0.12) probably_damaging(0.936) TCGA-NK-A5CR-01 11 85437147 85437147 T G SYTL2 Missense_Mutation p.E118A 0.41 deleterious_low_confidence(0) benign(0.439) TCGA-NK-A5CR-01 11 85701343 85701343 G A PICALM Missense_Mutation p.S453L 0.36 tolerated(0.17) benign(0) TCGA-NK-A5CR-01 12 102437944 102437944 G T CCDC53 Missense_Mutation p.P88H 0.44 tolerated(0.05) benign(0.053) TCGA-NK-A5CR-01 12 10954214 10954214 C G TAS2R7 Nonstop_Mutation p.*319Sext*7 0.27 TCGA-NK-A5CR-01 12 110232202 110232202 C A TRPV4 Missense_Mutation p.V475L 0.05 tolerated(0.22) possibly_damaging(0.804) TCGA-NK-A5CR-01 12 113349021 113349021 T A OAS1 Missense_Mutation p.V212D 0.25 deleterious(0) probably_damaging(1) TCGA-NK-A5CR-01 12 115117379 115117379 A G TBX3 Silent p.Y265Y 0.28 TCGA-NK-A5CR-01 12 122685356 122685356 C A LRRC43 Missense_Mutation p.L562I 0.22 deleterious(0.03) probably_damaging(0.978) TCGA-NK-A5CR-01 12 130898772 130898772 G A RIMBP2 Silent p.A850A 0.45 TCGA-NK-A5CR-01 12 14576966 14576966 T A ATF7IP Silent p.T39T 0.37 TCGA-NK-A5CR-01 12 15264278 15264278 C A RERG Missense_Mutation p.Q64H 0.36 deleterious(0) probably_damaging(0.975) TCGA-NK-A5CR-01 12 18891421 18891421 T - CAPZA3 Frame_Shift_Del p.H74Tfs*4 0.20 TCGA-NK-A5CR-01 12 19422764 19422764 T A PLEKHA5 Missense_Mutation p.L258M 0.27 tolerated(0.07) probably_damaging(1) TCGA-NK-A5CR-01 12 1943615 1943615 C A LRTM2 Missense_Mutation p.P281T 0.42 tolerated(0.27) benign(0.293) TCGA-NK-A5CR-01 12 46231194 46231194 A G ARID2 Missense_Mutation p.M372V 0.47 tolerated(0.09) possibly_damaging(0.497) TCGA-NK-A5CR-01 12 49412616 49412616 C T PRKAG1 5'Flank 0.48 TCGA-NK-A5CR-01 12 5021069 5021069 G T KCNA1 Missense_Mutation p.M175I 0.36 tolerated(0.07) benign(0.035) TCGA-NK-A5CR-01 12 5021070 5021070 G T KCNA1 Missense_Mutation p.V176F 0.36 tolerated(0.07) possibly_damaging(0.778) TCGA-NK-A5CR-01 12 5022062 5022062 C A KCNA1 3'UTR 0.37 TCGA-NK-A5CR-01 12 53233720 53233720 G C KRT78 Missense_Mutation p.L366V 0.47 tolerated(0.09) possibly_damaging(0.519) TCGA-NK-A5CR-01 12 54379126 54379126 G C HOXC10 Missense_Mutation p.S28T 0.44 tolerated(0.34) benign(0.354) TCGA-NK-A5CR-01 12 56510482 56510482 C G RPL41 5'UTR 0.05 TCGA-NK-A5CR-01 12 57603588 57603588 C T LRP1 Silent p.L4126L 0.43 TCGA-NK-A5CR-01 12 57843506 57843506 G T INHBC Missense_Mutation p.V254L 0.41 deleterious(0.01) possibly_damaging(0.785) TCGA-NK-A5CR-01 12 57865114 57865114 C A GLI1 Missense_Mutation p.P864H 0.41 deleterious(0) benign(0.443) TCGA-NK-A5CR-01 12 62894593 62894593 G A MON2 Missense_Mutation p.G199E 0.30 tolerated(0.95) benign(0.096) TCGA-NK-A5CR-01 12 63544536 63544536 G T AVPR1A Missense_Mutation p.N27K 0.23 tolerated(0.07) benign(0.142) TCGA-NK-A5CR-01 12 64488960 64488960 G C SRGAP1 Missense_Mutation p.D552H 0.30 deleterious(0.04) probably_damaging(0.992) TCGA-NK-A5CR-01 12 64521927 64521940 CAATACACGGGCTT - SRGAP1 Frame_Shift_Del p.Y944* 0.22 TCGA-NK-A5CR-01 12 7293836 7293836 A T CLSTN3 Splice_Site p.X442_splice 0.42 TCGA-NK-A5CR-01 12 8084045 8084045 G A SLC2A3 Silent p.V102V 0.44 TCGA-NK-A5CR-01 12 81111126 81111126 G T MYF5 Missense_Mutation p.R95L 0.27 deleterious(0) probably_damaging(1) TCGA-NK-A5CR-01 12 81593117 81593117 C A ACSS3 Intron 0.24 TCGA-NK-A5CR-01 12 81627236 81627236 G T ACSS3 Missense_Mutation p.G569C 0.08 deleterious(0) probably_damaging(1) TCGA-NK-A5CR-01 12 85445962 85445962 A G LRRIQ1 Missense_Mutation p.Q229R 0.44 deleterious(0) possibly_damaging(0.717) TCGA-NK-A5CR-01 12 85517961 85517961 A G LRRIQ1 Missense_Mutation p.K1224R 0.25 tolerated(0.11) benign(0.022) TCGA-NK-A5CR-01 12 9309931 9309931 G A PZP Silent p.A1130A 0.32 TCGA-NK-A5CR-01 12 94976229 94976229 G A TMCC3 Missense_Mutation p.P55L 0.23 tolerated(0.21) benign(0.009) TCGA-NK-A5CR-01 13 101717758 101717758 C A NALCN Silent p.L1534L 0.66 TCGA-NK-A5CR-01 13 103459678 103459678 G A BIVM Missense_Mutation p.E21K 0.67 tolerated_low_confidence(0.65) benign(0.024) TCGA-NK-A5CR-01 13 23929224 23929224 G C SACS Missense_Mutation p.I509M 0.12 benign(0.395) TCGA-NK-A5CR-01 13 77807399 77807399 C A MYCBP2 Splice_Site p.X839_splice 0.78 TCGA-NK-A5CR-01 14 23345242 23345242 C T LRP10 Missense_Mutation p.P362L 0.45 deleterious(0) benign(0.177) TCGA-NK-A5CR-01 14 47601049 47601049 C A MDGA2 Missense_Mutation p.G265C 0.69 deleterious(0) possibly_damaging(0.891) TCGA-NK-A5CR-01 14 52433333 52433333 C - GNG2 Frame_Shift_Del p.L50Sfs*2 0.12 TCGA-NK-A5CR-01 14 57938037 57938037 C G C14orf105 3'UTR 0.84 TCGA-NK-A5CR-01 14 57960429 57960429 C G C14orf105 Missense_Mutation p.G2A 0.87 deleterious(0) probably_damaging(1) TCGA-NK-A5CR-01 14 60574624 60574624 A G PCNXL4 Intron 0.77 TCGA-NK-A5CR-01 14 72205890 72205890 G A SIPA1L1 3'UTR 0.69 TCGA-NK-A5CR-01 15 100331966 100331966 C A AC090825.1 5'Flank 0.48 TCGA-NK-A5CR-01 15 102346345 102346345 C T OR4F6 Silent p.C141C 0.35 TCGA-NK-A5CR-01 15 22332647 22332647 C A RP11-69H14.6 RNA 0.09 TCGA-NK-A5CR-01 15 22382763 22382763 C T OR4N4 Silent p.C97C 0.25 TCGA-NK-A5CR-01 15 23889322 23889322 G A MAGEL2 Silent p.L587L 0.26 TCGA-NK-A5CR-01 15 24922722 24922722 G A NPAP1 Missense_Mutation p.A570T 0.27 tolerated(1) benign(0) TCGA-NK-A5CR-01 15 25310188 25310188 C A SNORD116-6 RNA 0.19 TCGA-NK-A5CR-01 15 28457730 28457730 C T HERC2 Splice_Site p.X2263_splice 0.43 TCGA-NK-A5CR-01 15 42092084 42092084 C G MAPKBP1 Missense_Mutation p.R60G 0.27 deleterious(0) benign(0.057) TCGA-NK-A5CR-01 15 50578294 50578294 C A GABPB1 Nonsense_Mutation p.E336* 0.26 TCGA-NK-A5CR-01 15 52656753 52656753 C A MYO5A Missense_Mutation p.V1103L 0.39 tolerated(0.3) benign(0.001) TCGA-NK-A5CR-01 15 55972785 55972785 C A PRTG Missense_Mutation p.G240C 0.22 deleterious(0.01) probably_damaging(0.971) TCGA-NK-A5CR-01 15 56958720 56958720 T A ZNF280D Missense_Mutation p.I623F 0.34 deleterious(0.03) benign(0.04) TCGA-NK-A5CR-01 15 62226510 62226510 A T VPS13C Missense_Mutation p.S1926T 0.28 tolerated(0.68) benign(0.001) TCGA-NK-A5CR-01 15 65494226 65494226 G T CILP Silent p.A390A 0.17 TCGA-NK-A5CR-01 15 74003592 74003592 T G CD276 Intron 0.22 TCGA-NK-A5CR-01 15 89386736 89386736 C T ACAN Missense_Mutation p.A303V 0.08 deleterious(0) unknown(0) TCGA-NK-A5CR-01 15 90171675 90171675 A G KIF7 Missense_Mutation p.I1336T 0.41 deleterious(0) probably_damaging(0.998) TCGA-NK-A5CR-01 16 24834261 24834261 C T TNRC6A Missense_Mutation p.L1814F 0.63 deleterious(0) probably_damaging(0.984) TCGA-NK-A5CR-01 16 26147506 26147506 C G HS3ST4 Missense_Mutation p.N436K 0.44 deleterious(0) probably_damaging(1) TCGA-NK-A5CR-01 16 2647276 2647276 G A PDPK1 Silent p.T518T 0.30 TCGA-NK-A5CR-01 16 29853273 29853273 G A MVP Missense_Mutation p.E492K 0.58 deleterious(0.01) probably_damaging(0.971) TCGA-NK-A5CR-01 16 32077384 32077384 G T IGHV3OR16-9 5'Flank 0.26 TCGA-NK-A5CR-01 16 47695639 47695640 - A PHKB Nonsense_Mutation p.C736* 0.31 TCGA-NK-A5CR-01 16 66945133 66945133 C T CDH16 Missense_Mutation p.A626T 0.46 tolerated(0.26) benign(0.003) TCGA-NK-A5CR-01 16 75600249 75600249 C G GABARAPL2 5'UTR 0.60 TCGA-NK-A5CR-01 16 84103564 84103564 T C MBTPS1 Missense_Mutation p.K621R 0.51 tolerated(0.21) benign(0.029) TCGA-NK-A5CR-01 17 10267698 10267698 G T MYH13 Silent p.G50G 0.21 TCGA-NK-A5CR-01 17 10321981 10321981 G A MYH8 Silent p.A164A 0.62 TCGA-NK-A5CR-01 17 10448797 10448797 A T MYH2 Missense_Mutation p.V124D 0.57 deleterious(0.01) probably_damaging(0.987) TCGA-NK-A5CR-01 17 11593537 11593537 G A DNAH9 Silent p.E1466E 0.62 TCGA-NK-A5CR-01 17 11593538 11593538 G T DNAH9 Missense_Mutation p.D1467Y 0.62 possibly_damaging(0.793) TCGA-NK-A5CR-01 17 19091349 19091349 C T SNORD3A RNA 0.23 TCGA-NK-A5CR-01 17 27069013 27069013 G A NEK8 3'UTR 0.41 TCGA-NK-A5CR-01 17 29622212 29622212 G T OMG Missense_Mutation p.L380I 0.39 deleterious(0.02) probably_damaging(0.967) TCGA-NK-A5CR-01 17 30376160 30376160 C T LRRC37B Missense_Mutation p.S808F 0.36 tolerated(0.41) possibly_damaging(0.831) TCGA-NK-A5CR-01 17 37822400 37822400 G T TCAP 3'UTR 0.34 TCGA-NK-A5CR-01 17 38188907 38188907 G A MED24 Missense_Mutation p.L311F 0.43 deleterious(0.02) probably_damaging(1) TCGA-NK-A5CR-01 17 39032534 39032534 G A KRT20 3'UTR 0.26 TCGA-NK-A5CR-01 17 44096053 44096053 C T MAPT Missense_Mutation p.S691F 0.31 deleterious(0) probably_damaging(1) TCGA-NK-A5CR-01 17 62557642 62557642 C A SMURF2 Missense_Mutation p.G431V 0.28 deleterious(0) probably_damaging(1) TCGA-NK-A5CR-01 17 74471153 74471153 T C RHBDF2 Missense_Mutation p.I425V 0.33 tolerated(0.16) benign(0.005) TCGA-NK-A5CR-01 17 7578457 7578457 C A TP53 Missense_Mutation p.R158L 0.61 deleterious(0) probably_damaging(0.986) TCGA-NK-A5CR-01 17 76968280 76968280 T A LGALS3BP Missense_Mutation p.Q379L 0.38 deleterious(0) possibly_damaging(0.848) TCGA-NK-A5CR-01 17 80401611 80401611 A G C17orf62 3'UTR 0.33 TCGA-NK-A5CR-01 18 28711548 28711548 G T DSC1 Intron 0.26 TCGA-NK-A5CR-01 18 70461367 70461367 T A NETO1 Silent p.A208A 0.38 TCGA-NK-A5CR-01 18 72343837 72343837 C A ZNF407 Missense_Mutation p.P288T 0.33 tolerated(0.19) benign(0.211) TCGA-NK-A5CR-01 19 10204251 10204251 T C ANGPTL6 Silent p.E332E 0.12 TCGA-NK-A5CR-01 19 12501483 12501483 C T ZNF799 Missense_Mutation p.G577R 0.42 tolerated(0.47) benign(0.02) TCGA-NK-A5CR-01 19 13246146 13246147 AG - NACC1 Frame_Shift_Del p.K42Sfs*115 0.27 TCGA-NK-A5CR-01 19 14591448 14591448 C A GIPC1 Missense_Mutation p.G144V 0.31 deleterious(0) probably_damaging(0.995) TCGA-NK-A5CR-01 19 15769608 15769608 A G CYP4F3 Silent p.S462S 0.46 TCGA-NK-A5CR-01 19 17487965 17487965 G A PLVAP Missense_Mutation p.L45F 0.43 deleterious(0) probably_damaging(1) TCGA-NK-A5CR-01 19 1802617 1802617 C A ATP8B3 Missense_Mutation p.S311I 0.39 deleterious(0) probably_damaging(0.93) TCGA-NK-A5CR-01 19 19823164 19823164 C T ZNF14 Missense_Mutation p.C309Y 0.32 deleterious(0) probably_damaging(1) TCGA-NK-A5CR-01 19 30199271 30199271 C A C19orf12 Missense_Mutation p.G28V 0.37 deleterious(0.03) benign(0.098) TCGA-NK-A5CR-01 19 30935547 30935547 C A ZNF536 Missense_Mutation p.L360I 0.44 deleterious(0) probably_damaging(0.997) TCGA-NK-A5CR-01 19 31769423 31769423 C G TSHZ3 Missense_Mutation p.V426L 0.14 tolerated(0.11) benign(0) TCGA-NK-A5CR-01 19 3532497 3532497 C G FZR1 Missense_Mutation p.S364C 0.10 deleterious(0) probably_damaging(0.986) TCGA-NK-A5CR-01 19 35617806 35617806 G A LGI4 Silent p.L248L 0.45 TCGA-NK-A5CR-01 19 36357426 36357426 C T KIRREL2 3'UTR 0.52 TCGA-NK-A5CR-01 19 36616666 36616666 C T TBCB Silent p.Y239Y 0.39 TCGA-NK-A5CR-01 19 36964349 36964349 C A ZNF566 Missense_Mutation p.M7I 0.39 tolerated(0.34) benign(0.034) TCGA-NK-A5CR-01 19 39819679 39819679 C A GMFG Silent p.G106G 0.21 TCGA-NK-A5CR-01 19 39977102 39977102 C T TIMM50 Silent p.D324D 0.22 TCGA-NK-A5CR-01 19 40882599 40882599 G A PLD3 Missense_Mutation p.G368E 0.36 tolerated(1) benign(0.002) TCGA-NK-A5CR-01 19 42392350 42392350 G A ARHGEF1 Splice_Site p.X52_splice 0.25 TCGA-NK-A5CR-01 19 43441321 43441321 C A PSG7 5'UTR 0.32 TCGA-NK-A5CR-01 19 43576046 43576046 A T PSG2 Missense_Mutation p.L257H 0.27 deleterious(0) probably_damaging(0.97) TCGA-NK-A5CR-01 19 51217099 51217099 C T SHANK1 Missense_Mutation p.A250T 0.48 possibly_damaging(0.69) TCGA-NK-A5CR-01 19 52147045 52147045 G A SIGLEC14 Silent p.I333I 0.59 TCGA-NK-A5CR-01 19 52468598 52468598 C T ZNF350 Missense_Mutation p.G370R 0.13 deleterious(0.03) probably_damaging(1) TCGA-NK-A5CR-01 19 53384486 53384486 T A ZNF320 Missense_Mutation p.E298V 0.06 deleterious(0.01) probably_damaging(0.94) TCGA-NK-A5CR-01 19 54845188 54845188 G A LILRA4 Missense_Mutation p.T435I 0.38 tolerated(0.1) benign(0.434) TCGA-NK-A5CR-01 19 55085354 55085354 C A LILRA2 Silent p.P3P 0.34 TCGA-NK-A5CR-01 19 55175933 55175933 T A LILRB4 Missense_Mutation p.S218T 0.33 tolerated(0.08) benign(0.003) TCGA-NK-A5CR-01 19 57840549 57840549 G A ZNF543 Missense_Mutation p.M573I 0.52 deleterious(0.03) benign(0) TCGA-NK-A5CR-01 19 58117321 58117321 A G ZNF530 Missense_Mutation p.E143G 0.22 tolerated(0.07) benign(0.035) TCGA-NK-A5CR-01 19 58213835 58213835 T C ZNF154 Missense_Mutation p.Y161C 0.29 deleterious(0) possibly_damaging(0.892) TCGA-NK-A5CR-01 19 7626160 7626160 G T PNPLA6 Missense_Mutation p.G1337V 0.21 tolerated(0.49) benign(0.012) TCGA-NK-A5CR-01 19 8976360 8976360 C G MUC16 Silent p.G14156G 0.40 TCGA-NK-A5CR-01 19 8993546 8993546 C A MUC16 Splice_Site p.X13848_splice 0.26 TCGA-NK-A5CR-01 19 9452615 9452615 T A ZNF559 Missense_Mutation p.V163D 0.41 tolerated(0.2) unknown(0) TCGA-NK-A5CR-01 1 104160581 104160615 TCCACCAAATGAAAATGTTGCAATTTACAACCCTT - AMY2A Frame_Shift_Del p.P59Qfs*11 0.23 TCGA-NK-A5CR-01 1 109242130 109242130 G A PRPF38B Missense_Mutation p.E377K 0.55 tolerated(0.17) unknown(0) TCGA-NK-A5CR-01 1 109806337 109806337 C G CELSR2 Missense_Mutation p.R1647G 0.09 deleterious(0) probably_damaging(0.998) TCGA-NK-A5CR-01 1 110051092 110051092 G A AMIGO1 Missense_Mutation p.A148V 0.07 tolerated(0.18) benign(0.001) TCGA-NK-A5CR-01 1 111742379 111742380 - T DENND2D Frame_Shift_Ins p.E37Rfs*19 0.27 TCGA-NK-A5CR-01 1 1120429 1120429 C G TTLL10 Missense_Mutation p.I447M 0.34 deleterious(0) probably_damaging(0.996) TCGA-NK-A5CR-01 1 113202385 113202385 G A CAPZA1 Missense_Mutation p.G190D 0.21 deleterious(0) probably_damaging(0.954) TCGA-NK-A5CR-01 1 145562120 145562120 A G ANKRD35 Missense_Mutation p.K603R 0.30 tolerated(0.52) benign(0.002) TCGA-NK-A5CR-01 1 147380445 147380445 C G GJA8 Missense_Mutation p.N121K 0.39 tolerated(0.84) benign(0.033) TCGA-NK-A5CR-01 1 152278165 152278165 A T FLG Missense_Mutation p.V3066E 0.30 unknown(0) TCGA-NK-A5CR-01 1 152279088 152279088 G T FLG Missense_Mutation p.S2758R 0.27 possibly_damaging(0.734) TCGA-NK-A5CR-01 1 155233822 155233822 T C CLK2 Silent p.K411K 0.06 TCGA-NK-A5CR-01 1 156552217 156552217 G C TTC24 Missense_Mutation p.D301H 0.35 tolerated(0.07) benign(0.086) TCGA-NK-A5CR-01 1 158627310 158627310 A G SPTA1 Missense_Mutation p.I921T 0.34 deleterious(0.04) benign(0.094) TCGA-NK-A5CR-01 1 158647597 158647597 G A SPTA1 Silent p.I280I 0.32 TCGA-NK-A5CR-01 1 158655108 158655108 C A SPTA1 Missense_Mutation p.L18F 0.31 deleterious(0) probably_damaging(0.998) TCGA-NK-A5CR-01 1 158747071 158747071 C T OR6N2 Missense_Mutation p.A119T 0.36 deleterious(0) possibly_damaging(0.78) TCGA-NK-A5CR-01 1 172628534 172628534 C T FASLG Missense_Mutation p.P65S 0.32 tolerated(0.21) benign(0.023) TCGA-NK-A5CR-01 1 176563660 176563661 GT - PAPPA2 Frame_Shift_Del p.F309* 0.29 TCGA-NK-A5CR-01 1 181546953 181546953 C A CACNA1E Silent p.T188T 0.21 TCGA-NK-A5CR-01 1 181546954 181546954 C A CACNA1E Missense_Mutation p.L189I 0.20 deleterious(0.01) possibly_damaging(0.694) TCGA-NK-A5CR-01 1 197072779 197072779 T C ASPM Missense_Mutation p.R1868G 0.10 deleterious(0) probably_damaging(0.918) TCGA-NK-A5CR-01 1 197889108 197889108 C A LHX9 Missense_Mutation p.P61T 0.32 tolerated(0.15) benign(0.012) TCGA-NK-A5CR-01 1 201054682 201054682 G C CACNA1S Silent p.A344A 0.09 TCGA-NK-A5CR-01 1 201330399 201330399 C A TNNT2 Intron 0.33 TCGA-NK-A5CR-01 1 215901420 215901420 G T USH2A Silent p.P4006P 0.29 TCGA-NK-A5CR-01 1 248525492 248525492 C A OR2T4 Silent p.R204R 0.54 TCGA-NK-A5CR-01 1 26387806 26387806 T A TRIM63 Missense_Mutation p.S118C 0.55 deleterious(0.01) possibly_damaging(0.708) TCGA-NK-A5CR-01 1 41463090 41463090 C T CTPS1 Silent p.C299C 0.41 TCGA-NK-A5CR-01 1 45292047 45292047 C G PTCH2 Missense_Mutation p.A997P 0.49 deleterious(0.02) benign(0.156) TCGA-NK-A5CR-01 1 47398381 47398381 A T CYP4A11 Intron 0.07 TCGA-NK-A5CR-01 1 75038033 75038036 CATT AATTG C1orf173 Frame_Shift_Ins p.N1120Qfs*6 0.33 TCGA-NK-A5CR-01 20 21314201 21314201 G T XRN2 Missense_Mutation p.S293I 0.50 tolerated(0.13) benign(0.007) TCGA-NK-A5CR-01 20 29847345 29847345 T A DEFB115 Nonsense_Mutation p.C59* 0.29 TCGA-NK-A5CR-01 20 30816116 30816116 A G POFUT1 Missense_Mutation p.Q198R 0.32 tolerated(0.18) possibly_damaging(0.735) TCGA-NK-A5CR-01 20 31575517 31575517 C A SUN5 Missense_Mutation p.W226C 0.31 deleterious(0.01) benign(0.405) TCGA-NK-A5CR-01 20 31575518 31575518 C T SUN5 Nonsense_Mutation p.W226* 0.31 TCGA-NK-A5CR-01 20 34206902 34206902 T A SPAG4 Missense_Mutation p.Y259N 0.34 deleterious(0) probably_damaging(0.999) TCGA-NK-A5CR-01 20 43355794 43355794 C T WISP2 Missense_Mutation p.A200V 0.34 deleterious(0.02) benign(0.444) TCGA-NK-A5CR-01 20 43547605 43547605 C G PABPC1L Missense_Mutation p.L188V 0.35 tolerated(0.16) benign(0.005) TCGA-NK-A5CR-01 20 44641177 44641177 C T MMP9 Missense_Mutation p.P429L 0.37 tolerated(0.19) benign(0.034) TCGA-NK-A5CR-01 20 44986395 44986395 G A SLC35C2 Silent p.L46L 0.49 TCGA-NK-A5CR-01 20 57767414 57767414 C A ZNF831 Missense_Mutation p.T447N 0.41 deleterious(0) probably_damaging(0.997) TCGA-NK-A5CR-01 21 47775512 47775512 G A PCNT Missense_Mutation p.R636H 0.40 benign(0) TCGA-NK-A5CR-01 22 17073241 17073241 G T CCT8L2 Missense_Mutation p.T67K 0.34 deleterious(0.05) possibly_damaging(0.757) TCGA-NK-A5CR-01 22 26839165 26839165 G A ASPHD2 Missense_Mutation p.G368E 0.33 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-NK-A5CR-01 22 29668417 29668417 C T EWSR1 Silent p.T33T 0.25 TCGA-NK-A5CR-01 22 37603843 37603843 G A SSTR3 5'UTR 0.50 TCGA-NK-A5CR-01 22 41723228 41723228 C A ZC3H7B Missense_Mutation p.L102M 0.07 deleterious(0.04) probably_damaging(0.982) TCGA-NK-A5CR-01 22 46806434 46806434 T C CELSR1 Silent p.L1598L 0.38 TCGA-NK-A5CR-01 2 116572557 116572557 C T DPP10 Missense_Mutation p.A634V 0.29 tolerated(0.17) possibly_damaging(0.591) TCGA-NK-A5CR-01 2 119732013 119732013 A C MARCO Missense_Mutation p.T189P 0.45 tolerated(1) probably_damaging(0.911) TCGA-NK-A5CR-01 2 127951427 127951427 G A CYP27C1 Missense_Mutation p.P246S 0.24 deleterious(0.02) probably_damaging(0.986) TCGA-NK-A5CR-01 2 130832948 130832948 G T POTEF Silent p.L699L 0.26 TCGA-NK-A5CR-01 2 165948816 165948816 G T SCN3A Missense_Mutation p.F1585L 0.48 deleterious(0) probably_damaging(0.992) TCGA-NK-A5CR-01 2 177194057 177194057 A T MTX2 Missense_Mutation p.Y149F 0.32 tolerated(0.18) benign(0.147) TCGA-NK-A5CR-01 2 178098911 178098931 TCTTTCCGTCGCTGACTGAAG - NFE2L2 In_Frame_Del p.D38_K44del 0.33 TCGA-NK-A5CR-01 2 178528631 178528631 A T PDE11A Missense_Mutation p.L870Q 0.17 deleterious(0) probably_damaging(0.995) TCGA-NK-A5CR-01 2 179436757 179436757 C G TTN Missense_Mutation p.R24701T 0.26 TCGA-NK-A5CR-01 2 179502120 179502120 C T TTN Missense_Mutation p.A13635T 0.50 TCGA-NK-A5CR-01 2 179635951 179635951 T A TTN Missense_Mutation p.K2701N 0.57 TCGA-NK-A5CR-01 2 1915859 1915859 G A MYT1L Missense_Mutation p.L546F 0.32 deleterious(0.01) probably_damaging(0.996) TCGA-NK-A5CR-01 2 197987470 197987470 C A ANKRD44 Silent p.V199V 0.58 TCGA-NK-A5CR-01 2 207175959 207175959 A G ZDBF2 Missense_Mutation p.H2236R 0.40 tolerated(1) benign(0.227) TCGA-NK-A5CR-01 2 209025587 209025587 C A CRYGA Missense_Mutation p.D156Y 0.57 deleterious(0.01) probably_damaging(0.999) TCGA-NK-A5CR-01 2 230663763 230663763 T C TRIP12 Missense_Mutation p.K1029E 0.58 tolerated(0.22) benign(0.444) TCGA-NK-A5CR-01 2 231112755 231112755 A G SP140 Silent p.Q289Q 0.58 TCGA-NK-A5CR-01 2 24426451 24426451 C A ITSN2 3'UTR 0.35 TCGA-NK-A5CR-01 2 25042765 25042765 C T CENPO 3'UTR 0.29 TCGA-NK-A5CR-01 2 37088341 37088341 C T STRN Missense_Mutation p.G535S 0.09 deleterious(0.04) possibly_damaging(0.806) TCGA-NK-A5CR-01 2 69002456 69002456 G T ARHGAP25 Missense_Mutation p.K55N 0.34 deleterious(0) probably_damaging(1) TCGA-NK-A5CR-01 2 73151547 73151547 C T EMX1 Silent p.A210A 0.20 TCGA-NK-A5CR-01 2 73519629 73519629 C A EGR4 Silent p.P242P 0.60 TCGA-NK-A5CR-01 2 76975911 76975911 G T LRRTM4 Silent p.P561P 0.35 TCGA-NK-A5CR-01 2 89185399 89185399 G C IGKV4-1 Silent p.L31L 0.28 TCGA-NK-A5CR-01 2 89185400 89185400 G T IGKV4-1 Missense_Mutation p.A32S 0.27 tolerated(1) benign(0.223) TCGA-NK-A5CR-01 2 9017333 9017333 T G MBOAT2 Missense_Mutation p.S173R 0.60 deleterious(0) possibly_damaging(0.853) TCGA-NK-A5CR-01 2 97854833 97854833 A G ANKRD36 Missense_Mutation p.Q718R 0.29 tolerated_low_confidence(0.1) benign(0.013) TCGA-NK-A5CR-01 2 98409894 98409894 T A TMEM131 Missense_Mutation p.D1170V 0.37 deleterious(0) probably_damaging(0.983) TCGA-NK-A5CR-01 3 108156491 108156491 A G MYH15 Missense_Mutation p.L1064P 0.28 deleterious(0) benign(0.064) TCGA-NK-A5CR-01 3 109049319 109049319 A T DPPA4 Intron 0.36 TCGA-NK-A5CR-01 3 121383274 121383274 G A GOLGB1 3'UTR 0.27 TCGA-NK-A5CR-01 3 123385146 123385146 C A MYLK Missense_Mutation p.A1251S 0.09 tolerated(0.07) benign(0.367) TCGA-NK-A5CR-01 3 128695909 128695909 C A KIAA1257 Missense_Mutation p.G270V 0.38 tolerated(0.12) possibly_damaging(0.641) TCGA-NK-A5CR-01 3 1415644 1415644 C G CNTN6 Missense_Mutation p.T661R 0.44 deleterious(0.04) probably_damaging(1) TCGA-NK-A5CR-01 3 150128286 150128286 G C TSC22D2 Missense_Mutation p.Q383H 0.30 tolerated(0.06) benign(0.032) TCGA-NK-A5CR-01 3 155481396 155481396 A G C3orf33 Silent p.Y222Y 0.15 TCGA-NK-A5CR-01 3 167245752 167245752 T G WDR49 Silent p.I468I 0.07 TCGA-NK-A5CR-01 3 172643203 172643203 C A SPATA16 Silent p.G387G 0.83 TCGA-NK-A5CR-01 3 180328359 180328359 A G TTC14 3'UTR 0.81 TCGA-NK-A5CR-01 3 183639166 183639166 C T ABCC5 Silent p.S1412S 0.86 TCGA-NK-A5CR-01 3 195477812 195477812 G T MUC4 Missense_Mutation p.N5273K 0.13 benign(0.159) TCGA-NK-A5CR-01 3 196831782 196831782 C G DLG1 Missense_Mutation p.R546P 0.07 deleterious(0) probably_damaging(0.965) TCGA-NK-A5CR-01 3 25686869 25686869 C A TOP2B Silent p.V49V 0.57 TCGA-NK-A5CR-01 3 42560756 42560756 A T VIPR1 Missense_Mutation p.T76S 0.40 tolerated(0.37) possibly_damaging(0.531) TCGA-NK-A5CR-01 3 49365211 49365211 C T USP4 Missense_Mutation p.E90K 0.50 tolerated(0.09) possibly_damaging(0.797) TCGA-NK-A5CR-01 3 49699292 49699292 C T BSN Silent p.P3338P 0.56 TCGA-NK-A5CR-01 3 52430728 52430728 C A DNAH1 Missense_Mutation p.P3842H 0.56 probably_damaging(0.994) TCGA-NK-A5CR-01 3 61975429 61975429 C G PTPRG Missense_Mutation p.F107L 0.09 deleterious(0) possibly_damaging(0.672) TCGA-NK-A5CR-01 3 66457902 66457902 T C LRIG1 Missense_Mutation p.N317D 0.44 deleterious(0) probably_damaging(0.999) TCGA-NK-A5CR-01 3 89259133 89259133 C T EPHA3 Nonsense_Mutation p.Q93* 0.39 TCGA-NK-A5CR-01 3 97686211 97686211 T A MINA Missense_Mutation p.Y76F 0.31 deleterious(0.04) benign(0.284) TCGA-NK-A5CR-01 4 122071336 122071336 G T TNIP3 Silent p.S254S 0.29 TCGA-NK-A5CR-01 4 123155943 123155943 G A KIAA1109 Nonsense_Mutation p.W1113* 0.16 TCGA-NK-A5CR-01 4 123329080 123329080 G T ADAD1 Missense_Mutation p.V248L 0.46 deleterious(0) probably_damaging(0.925) TCGA-NK-A5CR-01 4 1388458 1388458 C A CRIPAK Silent p.A53A 0.60 TCGA-NK-A5CR-01 4 143191921 143191921 T C INPP4B Silent p.S170S 0.18 TCGA-NK-A5CR-01 4 155219268 155219268 G T DCHS2 Missense_Mutation p.D1611E 0.19 deleterious(0) probably_damaging(0.999) TCGA-NK-A5CR-01 4 157732061 157732061 C G PDGFC Missense_Mutation p.R141S 0.08 deleterious(0.02) benign(0.243) TCGA-NK-A5CR-01 4 169183896 169183896 G C DDX60 Missense_Mutation p.R1028G 0.15 deleterious(0.02) probably_damaging(0.954) TCGA-NK-A5CR-01 4 174450293 174450293 G T HAND2 Missense_Mutation p.H50N 0.27 tolerated(0.28) benign(0.191) TCGA-NK-A5CR-01 4 52951094 52951094 C T SPATA18 Nonsense_Mutation p.R498* 0.26 TCGA-NK-A5CR-01 4 56283298 56283298 G T TMEM165 Missense_Mutation p.V165L 0.27 tolerated(0.3) benign(0.006) TCGA-NK-A5CR-01 4 56770657 56770657 A T EXOC1 Missense_Mutation p.H894L 0.35 deleterious(0) probably_damaging(0.983) TCGA-NK-A5CR-01 4 6377611 6377611 C A PPP2R2C Nonsense_Mutation p.E128* 0.70 TCGA-NK-A5CR-01 4 68930643 68930643 A G TMPRSS11F Missense_Mutation p.W259R 0.37 deleterious(0) probably_damaging(1) TCGA-NK-A5CR-01 4 89300071 89300071 G A HERC6 5'UTR 0.25 TCGA-NK-A5CR-01 4 90857360 90857360 T C MMRN1 Silent p.H843H 0.31 TCGA-NK-A5CR-01 5 11385076 11385076 G T CTNND2 Missense_Mutation p.A293D 0.36 deleterious(0.02) benign(0.066) TCGA-NK-A5CR-01 5 1221985 1221985 C T SLC6A19 Missense_Mutation p.S624F 0.21 deleterious(0) probably_damaging(0.95) TCGA-NK-A5CR-01 5 132227911 132227911 G A AFF4 Missense_Mutation p.T861I 0.74 deleterious(0.03) benign(0.038) TCGA-NK-A5CR-01 5 140249516 140249516 G T PCDHA11 Missense_Mutation p.E276D 0.53 tolerated_low_confidence(0.65) benign(0.177) TCGA-NK-A5CR-01 5 140503610 140503610 C A PCDHB4 Missense_Mutation p.P677Q 0.57 tolerated_low_confidence(0.09) benign(0.314) TCGA-NK-A5CR-01 5 140789868 140789868 C G PCDHGB6 Nonsense_Mutation p.S700* 0.58 TCGA-NK-A5CR-01 5 161112942 161112942 T C GABRA6 5'UTR 0.65 TCGA-NK-A5CR-01 5 169508956 169508956 C A DOCK2 Silent p.R1800R 0.39 TCGA-NK-A5CR-01 5 176001083 176001083 G A CDHR2 Splice_Site p.X136_splice 0.73 TCGA-NK-A5CR-01 5 180166330 180166330 G T OR2Y1 Missense_Mutation p.H243Q 0.18 deleterious(0) probably_damaging(1) TCGA-NK-A5CR-01 5 32072310 32072310 A G PDZD2 Missense_Mutation p.H871R 0.25 deleterious(0.04) benign(0.007) TCGA-NK-A5CR-01 5 43446466 43446466 G A C5orf28 Missense_Mutation p.P169L 0.30 deleterious(0) probably_damaging(0.999) TCGA-NK-A5CR-01 5 74638523 74638523 G A HMGCR Missense_Mutation p.M31I 0.09 tolerated(0.32) benign(0.004) TCGA-NK-A5CR-01 5 76987232 76987232 C A TBCA 3'UTR 1.00 TCGA-NK-A5CR-01 6 108192813 108192813 C A SEC63 3'UTR 0.41 TCGA-NK-A5CR-01 6 135323896 135323896 T C HBS1L Missense_Mutation p.Q172R 0.25 tolerated(0.29) probably_damaging(0.911) TCGA-NK-A5CR-01 6 135516954 135516954 T A MYB Missense_Mutation p.H339Q 0.33 tolerated(0.48) benign(0.008) TCGA-NK-A5CR-01 6 136871516 136871516 G A RP3-325F22.5 5'Flank 0.19 TCGA-NK-A5CR-01 6 146625869 146625869 G T GRM1 Missense_Mutation p.R358M 0.39 deleterious(0) possibly_damaging(0.886) TCGA-NK-A5CR-01 6 151121971 151121971 T G PLEKHG1 Missense_Mutation p.V249G 0.32 deleterious(0) probably_damaging(1) TCGA-NK-A5CR-01 6 158925013 158925013 G A TULP4 Missense_Mutation p.G1440S 0.13 tolerated_low_confidence(1) benign(0.003) TCGA-NK-A5CR-01 6 16328199 16328199 C A ATXN1 Missense_Mutation p.V115L 0.62 deleterious(0.04) benign(0.09) TCGA-NK-A5CR-01 6 165703401 165703401 T C C6orf118 Missense_Mutation p.T426A 0.43 tolerated(0.29) benign(0.034) TCGA-NK-A5CR-01 6 26217307 26217307 C T HIST1H2AE Silent p.L35L 0.55 TCGA-NK-A5CR-01 6 2678494 2678494 C T MYLK4 Missense_Mutation p.A334T 0.51 deleterious(0) probably_damaging(0.975) TCGA-NK-A5CR-01 6 33287824 33287824 C A DAXX Missense_Mutation p.D477Y 0.74 deleterious(0.04) benign(0.384) TCGA-NK-A5CR-01 6 33393600 33393600 G C SYNGAP1 Missense_Mutation p.R72P 0.54 tolerated(0.19) possibly_damaging(0.896) TCGA-NK-A5CR-01 6 66205165 66205165 C A EYS Nonsense_Mutation p.E47* 0.36 TCGA-NK-A5CR-01 6 7247227 7247227 G T RREB1 Missense_Mutation p.G1515V 0.62 tolerated(0.3) benign(0.006) TCGA-NK-A5CR-01 6 80747688 80747688 G T TTK Missense_Mutation p.G685V 0.45 deleterious(0) probably_damaging(1) TCGA-NK-A5CR-01 6 87796024 87796024 C A CGA Missense_Mutation p.V73F 0.34 deleterious(0) probably_damaging(0.988) TCGA-NK-A5CR-01 6 87796028 87796028 C A CGA Missense_Mutation p.M71I 0.34 deleterious(0.01) possibly_damaging(0.708) TCGA-NK-A5CR-01 7 100160569 100160569 G T AGFG2 Missense_Mutation p.G391W 0.24 deleterious(0) probably_damaging(1) TCGA-NK-A5CR-01 7 100175013 100175013 C A LRCH4 Splice_Site p.X393_splice 0.16 TCGA-NK-A5CR-01 7 100682811 100682811 C A MUC17 Missense_Mutation p.A2705D 0.67 unknown(0) TCGA-NK-A5CR-01 7 102988133 102988133 G C PSMC2 5'UTR 0.16 TCGA-NK-A5CR-01 7 106545679 106545679 G T PIK3CG Silent p.R1052R 0.23 TCGA-NK-A5CR-01 7 120884283 120884283 G T CPED1 Missense_Mutation p.C734F 0.70 deleterious(0) probably_damaging(0.997) TCGA-NK-A5CR-01 7 131887502 131887502 C A PLXNA4 Missense_Mutation p.G830V 0.13 tolerated(0.21) possibly_damaging(0.487) TCGA-NK-A5CR-01 7 132193337 132193337 G A PLXNA4 Missense_Mutation p.S39L 0.71 tolerated(0.14) benign(0.008) TCGA-NK-A5CR-01 7 141422946 141422946 A G WEE2 Missense_Mutation p.Q298R 0.08 deleterious(0.03) probably_damaging(0.985) TCGA-NK-A5CR-01 7 141796159 141796160 AT - MGAM Frame_Shift_Del p.I1650Rfs*19 0.10 TCGA-NK-A5CR-01 7 151797887 151797887 G C GALNT11 Missense_Mutation p.M100I 0.66 tolerated(0.05) benign(0.017) TCGA-NK-A5CR-01 7 154002539 154002539 G C DPP6 Intron 0.13 TCGA-NK-A5CR-01 7 43485103 43485103 G A HECW1 Missense_Mutation p.G778R 0.30 deleterious_low_confidence(0.03) possibly_damaging(0.482) TCGA-NK-A5CR-01 7 45141469 45141469 C T TBRG4 Missense_Mutation p.D508N 0.31 tolerated(0.16) benign(0.036) TCGA-NK-A5CR-01 7 48308692 48308692 G A ABCA13 Splice_Site p.X707_splice 0.33 TCGA-NK-A5CR-01 7 5103543 5103543 T C RBAK Silent p.S152S 0.13 TCGA-NK-A5CR-01 7 75172233 75172233 T G HIP1 Missense_Mutation p.N943H 0.17 deleterious(0) benign(0.147) TCGA-NK-A5CR-01 7 75172234 75172234 C A HIP1 Silent p.V942V 0.17 TCGA-NK-A5CR-01 7 81346614 81346614 C A HGF Missense_Mutation p.A447S 0.66 tolerated(0.71) benign(0.141) TCGA-NK-A5CR-01 7 91694764 91694764 G C AKAP9 Missense_Mutation p.R2066T 0.10 probably_damaging(0.999) TCGA-NK-A5CR-01 7 92731912 92731912 G C SAMD9 Missense_Mutation p.Q1167E 0.63 deleterious(0) probably_damaging(0.996) TCGA-NK-A5CR-01 7 92763353 92763353 G A SAMD9L Silent p.I644I 0.25 TCGA-NK-A5CR-01 7 95115368 95115368 G C ASB4 Missense_Mutation p.D29H 0.17 deleterious(0) possibly_damaging(0.84) TCGA-NK-A5CR-01 8 107718614 107718614 A G OXR1 Missense_Mutation p.I290V 0.49 tolerated(0.48) benign(0.001) TCGA-NK-A5CR-01 8 126088676 126088676 C A KIAA0196 Missense_Mutation p.V260L 0.47 deleterious(0.01) probably_damaging(0.964) TCGA-NK-A5CR-01 8 135614704 135614704 C A ZFAT Missense_Mutation p.D420Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-NK-A5CR-01 8 139163806 139163806 C T FAM135B Missense_Mutation p.G971E 0.45 tolerated_low_confidence(0.63) benign(0.006) TCGA-NK-A5CR-01 8 139165421 139165421 C A FAM135B Missense_Mutation p.V433L 0.17 tolerated(0.56) benign(0.011) TCGA-NK-A5CR-01 8 142476535 142476535 G A MROH5 3'UTR 0.53 TCGA-NK-A5CR-01 8 143958490 143958490 C G CYP11B1 Missense_Mutation p.G182R 0.29 tolerated(0.25) benign(0.121) TCGA-NK-A5CR-01 8 22881698 22881699 - A TNFRSF10B Intron 0.39 TCGA-NK-A5CR-01 8 33361295 33361295 G A TTI2 Silent p.Y362Y 0.07 TCGA-NK-A5CR-01 8 38840539 38840539 A G HTRA4 Missense_Mutation p.K414E 0.55 tolerated(1) benign(0.01) TCGA-NK-A5CR-01 8 39785347 39785347 A C IDO1 Splice_Site p.X286_splice 0.50 TCGA-NK-A5CR-01 8 39872902 39872902 G T IDO2 Missense_Mutation p.Q348H 0.23 tolerated(0.08) benign(0.029) TCGA-NK-A5CR-01 8 42227433 42227433 G C POLB Missense_Mutation p.K280N 0.40 deleterious(0.02) benign(0.009) TCGA-NK-A5CR-01 8 48706849 48706849 A G PRKDC Splice_Site p.X3556_splice 0.58 TCGA-NK-A5CR-01 8 51314871 51314871 G T SNTG1 Silent p.V43V 0.37 TCGA-NK-A5CR-01 8 57079730 57079730 C T PLAG1 Missense_Mutation p.R192H 0.10 deleterious(0) probably_damaging(0.991) TCGA-NK-A5CR-01 8 72968046 72968046 C G TRPA1 Silent p.G413G 0.12 TCGA-NK-A5CR-01 8 8176479 8176479 C A SGK223 Nonsense_Mutation p.E1136* 0.58 TCGA-NK-A5CR-01 8 90801560 90801560 G T RIPK2 Missense_Mutation p.D379Y 0.49 deleterious(0) possibly_damaging(0.759) TCGA-NK-A5CR-01 9 104499977 104499977 T C GRIN3A Silent p.A95A 0.31 TCGA-NK-A5CR-01 9 107361640 107361640 C T OR13C5 Missense_Mutation p.G19S 0.39 tolerated(0.18) possibly_damaging(0.543) TCGA-NK-A5CR-01 9 113276267 113276267 A T SVEP1 Missense_Mutation p.C362S 0.64 probably_damaging(0.998) TCGA-NK-A5CR-01 9 123007298 123007298 G A MIR147A RNA 0.41 TCGA-NK-A5CR-01 9 125486817 125486817 G C OR1L4 Missense_Mutation p.Q183H 0.24 tolerated(0.53) benign(0.068) TCGA-NK-A5CR-01 9 135204901 135204901 T C SETX Missense_Mutation p.N695S 0.41 tolerated(0.82) benign(0.001) TCGA-NK-A5CR-01 9 135906374 135906374 G C GTF3C5 5'Flank 0.48 TCGA-NK-A5CR-01 9 137293716 137293716 T C RXRA Silent p.T89T 0.43 TCGA-NK-A5CR-01 9 140325538 140325538 G C NOXA1 Silent p.A228A 0.32 TCGA-NK-A5CR-01 9 21350770 21350770 C A IFNA6 Missense_Mutation p.M39I 0.65 tolerated(0.44) benign(0.008) TCGA-NK-A5CR-01 9 23701402 23701402 G A ELAVL2 Silent p.L230L 0.57 TCGA-NK-A5CR-01 9 35043909 35043909 C T C9orf131 Missense_Mutation p.S428F 0.70 deleterious(0.03) possibly_damaging(0.66) TCGA-NK-A5CR-01 9 36118772 36118772 G C RECK Missense_Mutation p.E758Q 0.53 tolerated(0.6) benign(0.006) TCGA-NK-A5CR-01 9 6015301 6015301 G T RANBP6 Missense_Mutation p.L103M 0.49 tolerated(0.3) benign(0.039) TCGA-NK-A5CR-01 9 80856662 80856662 A T CEP78 Missense_Mutation p.T184S 0.33 tolerated(0.2) benign(0.017) TCGA-NK-A5CR-01 9 8518422 8518422 G C PTPRD Silent p.P323P 0.45 TCGA-NK-A5CR-01 9 88247854 88247854 C A AGTPBP1 Missense_Mutation p.V540F 0.27 tolerated(0.19) benign(0.121) TCGA-NK-A5CR-01 9 99521864 99521864 T A ZNF510 Missense_Mutation p.K416N 0.34 tolerated(0.25) probably_damaging(0.985) TCGA-NK-A5CR-01 9 99711943 99711943 C T HIATL2 Missense_Mutation p.A97T 0.28 tolerated(0.09) probably_damaging(0.928) TCGA-NK-A5CR-01 X 100611177 100611177 T A BTK Missense_Mutation p.M477L 0.70 tolerated(0.22) benign(0.015) TCGA-NK-A5CR-01 X 117043294 117043294 C A KLHL13 Missense_Mutation p.V449F 0.72 deleterious(0) probably_damaging(0.979) TCGA-NK-A5CR-01 X 127185205 127185205 G T ACTRT1 Silent p.P327P 0.70 TCGA-NK-A5CR-01 X 132887546 132887546 T A GPC3 Missense_Mutation p.Q332L 0.72 tolerated(1) benign(0.002) TCGA-NK-A5CR-01 X 138850501 138850501 T C ATP11C Missense_Mutation p.N773S 0.17 tolerated(0.15) benign(0.023) TCGA-NK-A5CR-01 X 86888842 86888842 G T KLHL4 Missense_Mutation p.R548L 0.76 deleterious(0.01) possibly_damaging(0.693) TCGA-NK-A5CT-01 10 105110742 105110742 G A PCGF6 Missense_Mutation p.P28S 0.26 tolerated_low_confidence(0.47) unknown(0) TCGA-NK-A5CT-01 10 105797457 105797457 T C COL17A1 Missense_Mutation p.T1049A 0.35 possibly_damaging(0.898) TCGA-NK-A5CT-01 10 107005423 107005423 G T SORCS3 Nonsense_Mutation p.E998* 0.25 TCGA-NK-A5CT-01 10 124335985 124335985 A G DMBT1 Silent p.L118L 0.20 TCGA-NK-A5CT-01 10 124800122 124800122 A G ACADSB Silent p.T148T 0.16 TCGA-NK-A5CT-01 10 21962538 21962538 T - MLLT10 Frame_Shift_Del p.G438Efs*21 0.26 TCGA-NK-A5CT-01 10 26455034 26455034 G A MYO3A Missense_Mutation p.R1013H 0.33 deleterious(0.04) benign(0.139) TCGA-NK-A5CT-01 10 38344866 38344866 G A ZNF33A Missense_Mutation p.G605E 0.26 deleterious(0) probably_damaging(1) TCGA-NK-A5CT-01 10 38647378 38647378 C A HSD17B7P2 RNA 0.25 TCGA-NK-A5CT-01 10 44053266 44053266 C A ZNF239 Missense_Mutation p.D88Y 0.24 tolerated(0.67) benign(0.007) TCGA-NK-A5CT-01 10 49654502 49654502 T C ARHGAP22 Missense_Mutation p.M693V 0.24 deleterious(0) probably_damaging(0.992) TCGA-NK-A5CT-01 10 50820486 50820486 G T SLC18A3 3'UTR 0.29 TCGA-NK-A5CT-01 10 54531393 54531393 C A MBL2 Translation_Start_Site p.M1? 0.26 deleterious(0) unknown(0) TCGA-NK-A5CT-01 10 5803292 5803292 G A FAM208B Silent p.K2344K 0.30 TCGA-NK-A5CT-01 10 67726498 67726498 C A CTNNA3 Missense_Mutation p.D758Y 0.23 deleterious(0) unknown(0) TCGA-NK-A5CT-01 10 75005704 75005704 T C DNAJC9 Silent p.Q184Q 0.29 TCGA-NK-A5CT-01 10 97143809 97143809 C A SORBS1 Missense_Mutation p.V491L 0.26 deleterious(0.03) possibly_damaging(0.766) TCGA-NK-A5CT-01 11 111835392 111835392 C T DIXDC1 Silent p.I60I 0.18 TCGA-NK-A5CT-01 11 123755292 123755292 A T TMEM225 Missense_Mutation p.F78Y 0.24 deleterious(0) possibly_damaging(0.787) TCGA-NK-A5CT-01 11 124481509 124481509 C A PANX3 Missense_Mutation p.D19E 0.24 tolerated(0.78) benign(0.119) TCGA-NK-A5CT-01 11 124745965 124745965 C T ROBO3 Missense_Mutation p.A846V 0.31 deleterious(0.05) possibly_damaging(0.782) TCGA-NK-A5CT-01 11 1265855 1265855 C A MUC5B Missense_Mutation p.T2582N 0.28 unknown(0) TCGA-NK-A5CT-01 11 22387097 22387097 C G SLC17A6 Missense_Mutation p.S251R 0.22 tolerated(0.38) possibly_damaging(0.528) TCGA-NK-A5CT-01 11 549950 549950 C T LRRC56 Silent p.R125R 0.24 TCGA-NK-A5CT-01 11 55541039 55541039 G T OR5D13 Silent p.V42V 0.29 TCGA-NK-A5CT-01 11 55594857 55594857 C A OR5L2 Missense_Mutation p.L55I 0.35 deleterious(0) probably_damaging(0.996) TCGA-NK-A5CT-01 11 55703163 55703163 C A OR5I1 Missense_Mutation p.K238N 0.20 deleterious(0) possibly_damaging(0.864) TCGA-NK-A5CT-01 11 56184899 56184899 T A OR5R1 Silent p.T270T 0.45 TCGA-NK-A5CT-01 11 60889213 60889213 G A CD5 Nonsense_Mutation p.W312* 0.30 TCGA-NK-A5CT-01 11 62363225 62363225 G A MTA2 Missense_Mutation p.T418M 0.29 tolerated(0.17) benign(0.006) TCGA-NK-A5CT-01 11 72289941 72289941 C T PDE2A Silent p.A823A 0.44 TCGA-NK-A5CT-01 11 72422118 72422118 C T ARAP1 Silent p.K387K 0.42 TCGA-NK-A5CT-01 11 77702238 77702238 T C INTS4 Silent p.Q54Q 0.34 TCGA-NK-A5CT-01 12 100601490 100601490 T C ACTR6 Missense_Mutation p.F102S 0.27 deleterious(0) probably_damaging(0.958) TCGA-NK-A5CT-01 12 101581172 101581172 G T SLC5A8 Missense_Mutation p.P319T 0.23 tolerated(0.05) benign(0.257) TCGA-NK-A5CT-01 12 108589815 108589815 A T WSCD2 Missense_Mutation p.D69V 0.21 tolerated(0.19) benign(0.001) TCGA-NK-A5CT-01 12 110618354 110618354 A G IFT81 Missense_Mutation p.H439R 0.18 tolerated(0.34) benign(0.02) TCGA-NK-A5CT-01 12 11149734 11149734 T A TAS2R20 Silent p.I247I 0.30 TCGA-NK-A5CT-01 12 111758168 111758168 C T CUX2 Silent p.F785F 0.13 TCGA-NK-A5CT-01 12 113334490 113334490 C A RPH3A Missense_Mutation p.R664S 0.20 tolerated(0.09) benign(0.444) TCGA-NK-A5CT-01 12 11507470 11507470 G A PRB1 Missense_Mutation p.S28F 0.09 tolerated_low_confidence(0.09) unknown(0) TCGA-NK-A5CT-01 12 117968755 117968755 G A KSR2 Missense_Mutation p.S598L 0.19 deleterious(0.02) benign(0.029) TCGA-NK-A5CT-01 12 119583292 119583292 C A SRRM4 Nonsense_Mutation p.S293* 0.28 TCGA-NK-A5CT-01 12 120156520 120156520 C A CIT Silent p.R1329R 0.19 TCGA-NK-A5CT-01 12 120156521 120156521 C G CIT Missense_Mutation p.R1329P 0.18 deleterious(0.01) probably_damaging(0.958) TCGA-NK-A5CT-01 12 14706225 14706225 C A PLBD1 Missense_Mutation p.W79C 0.30 deleterious(0) probably_damaging(1) TCGA-NK-A5CT-01 12 15748042 15748042 G A PTPRO Intron 0.21 TCGA-NK-A5CT-01 12 15834173 15834173 T A EPS8 Silent p.A41A 0.25 TCGA-NK-A5CT-01 12 21391910 21391910 C A SLCO1B1 Intron 0.10 TCGA-NK-A5CT-01 12 3701443 3701443 G - PRMT8 Frame_Shift_Del p.E343Kfs*18 0.20 TCGA-NK-A5CT-01 12 41337503 41337503 G T CNTN1 Missense_Mutation p.S495I 0.28 deleterious(0.03) probably_damaging(0.962) TCGA-NK-A5CT-01 12 44917170 44917170 C G NELL2 Missense_Mutation p.K684N 0.21 tolerated(0.38) probably_damaging(0.959) TCGA-NK-A5CT-01 12 49073508 49073508 G A KANSL2 Silent p.S120S 0.30 TCGA-NK-A5CT-01 12 52385763 52385763 T G ACVR1B Missense_Mutation p.W501G 0.05 deleterious(0) probably_damaging(0.998) TCGA-NK-A5CT-01 12 53009100 53009100 C G KRT73 Missense_Mutation p.R229P 0.29 deleterious(0) probably_damaging(0.99) TCGA-NK-A5CT-01 12 54339127 54339127 A G HOXC13 3'UTR 0.23 TCGA-NK-A5CT-01 12 54797985 54797985 G - ITGA5 Frame_Shift_Del p.A504Pfs*12 0.18 TCGA-NK-A5CT-01 12 55820249 55820249 C A OR6C76 Missense_Mutation p.T71N 0.25 deleterious_low_confidence(0) possibly_damaging(0.864) TCGA-NK-A5CT-01 12 57113060 57113060 C A NACA Intron 0.29 TCGA-NK-A5CT-01 12 6426751 6426751 C G PLEKHG6 Silent p.L302L 0.21 TCGA-NK-A5CT-01 12 69120344 69120344 C T NUP107 Missense_Mutation p.R548C 0.30 deleterious(0) probably_damaging(0.999) TCGA-NK-A5CT-01 12 70150198 70150198 G C RAB3IP Missense_Mutation p.D105H 0.23 tolerated_low_confidence(0.05) possibly_damaging(0.633) TCGA-NK-A5CT-01 12 71158532 71158532 C G PTPRR Silent p.L128L 0.20 TCGA-NK-A5CT-01 12 79611338 79611338 G A SYT1 Silent p.P13P 0.23 TCGA-NK-A5CT-01 12 81746895 81746895 T A PPFIA2 Intron 0.19 TCGA-NK-A5CT-01 12 8988889 8988889 G A A2ML1 Missense_Mutation p.E228K 0.24 tolerated(0.51) benign(0.004) TCGA-NK-A5CT-01 12 95676294 95676294 A G VEZT Missense_Mutation p.Y401C 0.18 deleterious(0.03) benign(0.25) TCGA-NK-A5CT-01 12 98850696 98850696 G A SLC9A7P1 RNA 0.21 TCGA-NK-A5CT-01 13 19751598 19751598 G T TUBA3C Silent p.P175P 0.27 TCGA-NK-A5CT-01 13 21374300 21374300 T C XPO4 Silent p.R714R 0.25 TCGA-NK-A5CT-01 13 23909507 23909507 G C SACS Silent p.V2836V 0.26 TCGA-NK-A5CT-01 13 39263691 39263691 A T FREM2 Missense_Mutation p.E737V 0.20 deleterious(0) benign(0.432) TCGA-NK-A5CT-01 13 58207653 58207653 G C PCDH17 Missense_Mutation p.D325H 0.21 deleterious(0) probably_damaging(1) TCGA-NK-A5CT-01 13 74518181 74518181 C A KLF12 Missense_Mutation p.M20I 0.33 deleterious_low_confidence(0.02) benign(0.138) TCGA-NK-A5CT-01 13 92797130 92797130 G C GPC5 Missense_Mutation p.Q483H 0.27 tolerated(0.19) benign(0.006) TCGA-NK-A5CT-01 14 106725377 106725377 C A IGHV3-23 Missense_Mutation p.A59S 0.20 deleterious_low_confidence(0.03) benign(0.446) TCGA-NK-A5CT-01 14 19378018 19378018 G T OR11H12 Missense_Mutation p.C142F 0.07 deleterious(0) probably_damaging(0.915) TCGA-NK-A5CT-01 14 31346864 31346864 G A COCH Missense_Mutation p.E57K 0.43 tolerated(0.89) benign(0.01) TCGA-NK-A5CT-01 14 72205906 72205906 C A SIPA1L1 3'UTR 0.41 TCGA-NK-A5CT-01 14 73137924 73137924 C T DPF3 Missense_Mutation p.D332N 0.21 deleterious_low_confidence(0) possibly_damaging(0.741) TCGA-NK-A5CT-01 14 73437746 73437746 C T ZFYVE1 Silent p.K726K 0.47 TCGA-NK-A5CT-01 14 74974680 74974680 A T LTBP2 Nonsense_Mutation p.C1257* 0.32 TCGA-NK-A5CT-01 14 75348692 75348692 C T DLST Silent p.F12F 0.25 TCGA-NK-A5CT-01 14 76088485 76088485 G T FLVCR2 Nonsense_Mutation p.E245* 0.38 TCGA-NK-A5CT-01 14 96858448 96858448 A T AK7 5'UTR 0.37 TCGA-NK-A5CT-01 15 31253188 31253188 A G MTMR10 Silent p.T218T 0.52 TCGA-NK-A5CT-01 15 39879677 39879677 C T THBS1 Missense_Mutation p.S417L 0.16 deleterious(0) probably_damaging(0.966) TCGA-NK-A5CT-01 15 41988910 41988910 G T MGA Missense_Mutation p.D568Y 0.11 deleterious(0.01) benign(0.233) TCGA-NK-A5CT-01 15 45391581 45391581 C A DUOX2 Missense_Mutation p.G1172V 0.22 deleterious(0) probably_damaging(1) TCGA-NK-A5CT-01 15 45460244 45460244 G A SHF Silent p.S391S 0.21 TCGA-NK-A5CT-01 15 50190395 50190395 C A ATP8B4 Missense_Mutation p.M781I 0.15 tolerated(0.22) benign(0.003) TCGA-NK-A5CT-01 15 53908037 53908037 C A WDR72 Missense_Mutation p.S789I 0.23 deleterious(0) benign(0.14) TCGA-NK-A5CT-01 15 58306389 58306389 G C ALDH1A2 Missense_Mutation p.Q70E 0.26 tolerated(0.94) probably_damaging(0.996) TCGA-NK-A5CT-01 15 72691116 72691116 C A TMEM202 Silent p.L68L 0.16 TCGA-NK-A5CT-01 15 72691117 72691117 C A TMEM202 Missense_Mutation p.L69I 0.16 tolerated(0.08) possibly_damaging(0.819) TCGA-NK-A5CT-01 15 78215343 78215343 G T RP11-114H24.7 3'Flank 0.21 TCGA-NK-A5CT-01 15 81230283 81230283 C A KIAA1199 Missense_Mutation p.P1124T 0.13 tolerated(0.27) benign(0.005) TCGA-NK-A5CT-01 15 88423631 88423631 C T NTRK3 Missense_Mutation p.R735H 0.14 deleterious(0) probably_damaging(1) TCGA-NK-A5CT-01 15 89743944 89743944 A G ABHD2 3'UTR 0.27 TCGA-NK-A5CT-01 16 19576246 19576246 G A C16orf62 Missense_Mutation p.D120N 0.18 tolerated(0.32) probably_damaging(0.915) TCGA-NK-A5CT-01 16 2163237 2163237 G A PKD1 Silent p.N970N 0.10 TCGA-NK-A5CT-01 16 23702242 23702242 C T ERN2 Missense_Mutation p.M945I 0.15 tolerated(0.05) benign(0.164) TCGA-NK-A5CT-01 16 49412408 49412408 G T C16orf78 Missense_Mutation p.A100S 0.26 tolerated(0.93) benign(0.041) TCGA-NK-A5CT-01 16 53488668 53488668 C G RBL2 Missense_Mutation p.L365V 0.22 tolerated(0.26) benign(0.007) TCGA-NK-A5CT-01 16 70432258 70432258 C A ST3GAL2 Missense_Mutation p.R59L 0.18 benign(0.003) TCGA-NK-A5CT-01 16 70893999 70893999 C T HYDIN Missense_Mutation p.G4034D 0.18 probably_damaging(0.982) TCGA-NK-A5CT-01 16 72163130 72163130 G T PMFBP1 Missense_Mutation p.H595Q 0.22 tolerated(0.42) benign(0.002) TCGA-NK-A5CT-01 16 72984862 72984862 C A ZFHX3 Missense_Mutation p.G908C 0.17 probably_damaging(1) TCGA-NK-A5CT-01 16 86544535 86544535 C A FOXF1 Missense_Mutation p.H120Q 0.21 deleterious(0) probably_damaging(0.998) TCGA-NK-A5CT-01 17 10318699 10318699 C A MYH8 Silent p.G217G 0.33 TCGA-NK-A5CT-01 17 10411763 10411763 T A MYH1 Missense_Mutation p.N605I 0.42 deleterious(0) probably_damaging(0.975) TCGA-NK-A5CT-01 17 14139991 14139991 G C CDRT15 Missense_Mutation p.Q54E 0.39 deleterious_low_confidence(0) possibly_damaging(0.764) TCGA-NK-A5CT-01 17 34233449 34233449 T A AC015849.16 RNA 0.40 TCGA-NK-A5CT-01 17 39723600 39723600 G T KRT9 Missense_Mutation p.S599R 0.34 unknown(0) TCGA-NK-A5CT-01 17 39766184 39766184 G T KRT16 3'UTR 0.43 TCGA-NK-A5CT-01 17 39766193 39766193 G C KRT16 Missense_Mutation p.S472R 0.57 tolerated_low_confidence(0.29) unknown(0) TCGA-NK-A5CT-01 17 47299544 47299544 G A ABI3 Silent p.G298G 0.35 TCGA-NK-A5CT-01 17 50149723 50149723 C A CA10 Missense_Mutation p.G31V 0.37 deleterious(0.05) benign(0.036) TCGA-NK-A5CT-01 17 62019299 62019299 C - SCN4A Frame_Shift_Del p.R1448Lfs*2 0.31 TCGA-NK-A5CT-01 17 7097308 7097308 C A DLG4 Missense_Mutation p.R540L 0.27 deleterious(0.01) benign(0.13) TCGA-NK-A5CT-01 17 74395601 74395601 G A UBE2O Silent p.S519S 0.38 TCGA-NK-A5CT-01 17 7578461 7578461 C A TP53 Missense_Mutation p.V157F 0.34 deleterious(0) probably_damaging(0.997) TCGA-NK-A5CT-01 18 22806343 22806343 G T ZNF521 Missense_Mutation p.F513L 0.22 tolerated(0.14) probably_damaging(0.996) TCGA-NK-A5CT-01 18 28604331 28604331 C G DSC3 Missense_Mutation p.L253F 0.09 tolerated(0.76) possibly_damaging(0.639) TCGA-NK-A5CT-01 18 30846933 30846933 G T CCDC178 Missense_Mutation p.D452E 0.19 tolerated(1) benign(0) TCGA-NK-A5CT-01 18 40854349 40854349 G T SYT4 Silent p.P15P 0.16 TCGA-NK-A5CT-01 18 53018195 53018195 C T TCF4 Missense_Mutation p.G239R 0.25 deleterious(0.01) possibly_damaging(0.67) TCGA-NK-A5CT-01 18 54591254 54591254 A T WDR7 Missense_Mutation p.T1210S 0.20 deleterious(0.01) probably_damaging(0.986) TCGA-NK-A5CT-01 18 70205894 70205894 G T CBLN2 Silent p.T157T 0.20 TCGA-NK-A5CT-01 19 12951849 12951849 C A MAST1 Missense_Mutation p.P73T 0.48 tolerated(0.07) probably_damaging(0.955) TCGA-NK-A5CT-01 19 35176505 35176505 G A ZNF302 3'UTR 0.12 TCGA-NK-A5CT-01 19 35842786 35842786 C T FFAR1 Missense_Mutation p.P111L 0.28 deleterious(0) probably_damaging(1) TCGA-NK-A5CT-01 19 36002334 36002334 G T DMKN Missense_Mutation p.D299E 0.41 tolerated(0.89) unknown(0) TCGA-NK-A5CT-01 19 36044066 36044066 G T ATP4A Missense_Mutation p.A875D 0.23 deleterious(0) probably_damaging(0.999) TCGA-NK-A5CT-01 19 40762959 40762959 C T AKT2 Missense_Mutation p.E17K 0.31 deleterious(0) benign(0.198) TCGA-NK-A5CT-01 19 4318921 4318921 T A FSD1 Missense_Mutation p.F338I 0.25 deleterious(0) possibly_damaging(0.764) TCGA-NK-A5CT-01 19 44980627 44980627 A G ZNF180 Missense_Mutation p.C691R 0.36 deleterious(0) possibly_damaging(0.489) TCGA-NK-A5CT-01 19 48893739 48893739 G A KDELR1 Missense_Mutation p.T45I 0.25 tolerated(0.47) benign(0.125) TCGA-NK-A5CT-01 19 50270451 50270451 C T AP2A1 Missense_Mutation p.R21W 0.09 deleterious(0) benign(0.23) TCGA-NK-A5CT-01 19 50753847 50753847 G T MYH14 Nonsense_Mutation p.E578* 0.35 TCGA-NK-A5CT-01 19 51215294 51215294 C G SHANK1 Silent p.V290V 0.38 TCGA-NK-A5CT-01 19 51410079 51410079 G A KLK4 3'UTR 0.17 TCGA-NK-A5CT-01 19 51825384 51825384 A G IGLON5 Missense_Mutation p.N49S 0.16 tolerated(0.93) benign(0.086) TCGA-NK-A5CT-01 19 54313627 54313627 C A NLRP12 Missense_Mutation p.R429M 0.35 deleterious(0) probably_damaging(0.962) TCGA-NK-A5CT-01 19 55179495 55179495 A C LILRB4 3'UTR 0.25 TCGA-NK-A5CT-01 19 55221388 55221388 C G AC098784.2 3'Flank 0.11 TCGA-NK-A5CT-01 19 56370010 56370010 C T NLRP4 Silent p.D417D 0.34 TCGA-NK-A5CT-01 19 57088382 57088382 G T ZNF470 Missense_Mutation p.M195I 0.34 tolerated(0.24) benign(0) TCGA-NK-A5CT-01 19 8842278 8842278 G T OR2Z1 Missense_Mutation p.E296D 0.35 tolerated(0.72) benign(0.025) TCGA-NK-A5CT-01 19 8959615 8959615 A G MUC16 Missense_Mutation p.L14506P 0.40 probably_damaging(0.948) TCGA-NK-A5CT-01 19 9074470 9074470 T G MUC16 Missense_Mutation p.T4326P 0.35 unknown(0) TCGA-NK-A5CT-01 19 9226119 9226119 A G OR7G1 Silent p.F107F 0.36 TCGA-NK-A5CT-01 1 101339479 101339479 G T EXTL2 3'UTR 0.23 TCGA-NK-A5CT-01 1 120461986 120461986 G A NOTCH2 Silent p.G1910G 0.19 TCGA-NK-A5CT-01 1 151680388 151680388 C T CELF3 Silent p.V170V 0.33 TCGA-NK-A5CT-01 1 155449825 155449825 C G ASH1L Missense_Mutation p.D946H 0.32 deleterious_low_confidence(0.03) possibly_damaging(0.889) TCGA-NK-A5CT-01 1 156823680 156823680 G A INSRR Silent p.I167I 0.29 TCGA-NK-A5CT-01 1 156926358 156926358 T C ARHGEF11 Splice_Site p.X509_splice 0.22 TCGA-NK-A5CT-01 1 157773796 157773796 C A FCRL1 Missense_Mutation p.C53F 0.30 tolerated(0.29) benign(0.118) TCGA-NK-A5CT-01 1 158151917 158151917 C A CD1D Missense_Mutation p.L142M 0.20 tolerated(0.12) possibly_damaging(0.584) TCGA-NK-A5CT-01 1 160146378 160146378 C T ATP1A4 Missense_Mutation p.A859V 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-NK-A5CT-01 1 161954666 161954666 G T OLFML2B Silent p.R527R 0.21 TCGA-NK-A5CT-01 1 163044113 163044113 G C RGS4 Silent p.V224V 0.24 TCGA-NK-A5CT-01 1 165324757 165324757 C T LMX1A Missense_Mutation p.A14T 0.13 tolerated_low_confidence(0.18) benign(0.028) TCGA-NK-A5CT-01 1 1720493 1720493 T C GNB1 Silent p.A305A 0.31 TCGA-NK-A5CT-01 1 17318886 17318887 CG A ATP13A2 Frame_Shift_Del p.P619Lfs*19 0.17 TCGA-NK-A5CT-01 1 175063228 175063228 G T TNN Missense_Mutation p.R476L 0.26 tolerated(0.06) probably_damaging(0.95) TCGA-NK-A5CT-01 1 185276148 185276148 C T IVNS1ABP Missense_Mutation p.E219K 0.15 tolerated(1) benign(0.124) TCGA-NK-A5CT-01 1 19431143 19431143 C A UBR4 Silent p.L4221L 0.12 TCGA-NK-A5CT-01 1 198721812 198721812 G A PTPRC Missense_Mutation p.M1140I 0.30 deleterious(0.02) benign(0.284) TCGA-NK-A5CT-01 1 206650026 206650026 C T IKBKE Silent p.P182P 0.22 TCGA-NK-A5CT-01 1 215821901 215821901 G T USH2A Missense_Mutation p.P4851T 0.21 benign(0.315) TCGA-NK-A5CT-01 1 216369940 216369940 A G USH2A Silent p.L1402L 0.23 TCGA-NK-A5CT-01 1 226552832 226552832 G C PARP1 Silent p.G843G 0.31 TCGA-NK-A5CT-01 1 227257552 227257552 T C CDC42BPA Missense_Mutation p.I944V 0.17 tolerated(0.41) benign(0.001) TCGA-NK-A5CT-01 1 235383160 235383160 C G ARID4B Missense_Mutation p.D511H 0.24 deleterious(0.03) benign(0.245) TCGA-NK-A5CT-01 1 236646043 236646043 C A EDARADD 3'Flank 0.26 TCGA-NK-A5CT-01 1 248366919 248366919 C A OR2M3 Missense_Mutation p.L184I 0.20 deleterious(0.04) benign(0.309) TCGA-NK-A5CT-01 1 248789783 248789783 G T OR2T11 Missense_Mutation p.S216Y 0.19 tolerated(0.32) benign(0.323) TCGA-NK-A5CT-01 1 249212257 249212257 G C PGBD2 Missense_Mutation p.D492H 0.30 deleterious(0) probably_damaging(0.93) TCGA-NK-A5CT-01 1 26691103 26691103 G A ZNF683 Missense_Mutation p.P312S 0.21 deleterious(0) probably_damaging(0.993) TCGA-NK-A5CT-01 1 27100358 27100358 A T ARID1A Missense_Mutation p.Q1357L 0.24 unknown(0) TCGA-NK-A5CT-01 1 31452999 31452999 C T PUM1 Missense_Mutation p.A422T 0.23 deleterious(0.02) possibly_damaging(0.844) TCGA-NK-A5CT-01 1 32154542 32154543 - A COL16A1 Frame_Shift_Ins p.V563Cfs*29 0.21 TCGA-NK-A5CT-01 1 32673468 32673468 G A IQCC Missense_Mutation p.D476N 0.20 tolerated(0.15) possibly_damaging(0.572) TCGA-NK-A5CT-01 1 38411439 38411439 G T INPP5B Silent p.G47G 0.30 TCGA-NK-A5CT-01 1 43316820 43316820 G A ZNF691 Missense_Mutation p.R95Q 0.22 tolerated(0.71) benign(0.001) TCGA-NK-A5CT-01 1 46206708 46206708 C G IPP Missense_Mutation p.E197Q 0.29 deleterious(0) probably_damaging(1) TCGA-NK-A5CT-01 1 47653053 47653053 G A PDZK1IP1 Silent p.A38A 0.13 TCGA-NK-A5CT-01 1 63284912 63284912 C G ATG4C Missense_Mutation p.L211V 0.26 tolerated(0.08) benign(0.002) TCGA-NK-A5CT-01 1 70819982 70819982 G A ANKRD13C Missense_Mutation p.T37I 0.29 deleterious_low_confidence(0.04) benign(0.023) TCGA-NK-A5CT-01 1 75072433 75072433 C A C1orf173 Missense_Mutation p.E447D 0.26 tolerated(0.18) benign(0.008) TCGA-NK-A5CT-01 1 75172654 75172654 C T CRYZ Missense_Mutation p.E253K 0.21 tolerated(0.06) benign(0.294) TCGA-NK-A5CT-01 1 75609606 75609606 G T LHX8 Silent p.R229R 0.21 TCGA-NK-A5CT-01 1 82432116 82432116 C T LPHN2 Silent p.Y707Y 0.25 TCGA-NK-A5CT-01 1 91403462 91403462 C A ZNF644 Nonsense_Mutation p.E1090* 0.26 TCGA-NK-A5CT-01 1 91403463 91403463 A T ZNF644 Nonsense_Mutation p.Y1089* 0.25 TCGA-NK-A5CT-01 20 16360631 16360631 T C KIF16B Silent p.L672L 0.21 TCGA-NK-A5CT-01 20 21689295 21689295 G T PAX1 Missense_Mutation p.G339V 0.49 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-NK-A5CT-01 20 2463946 2463946 C A ZNF343 Missense_Mutation p.C554F 0.29 deleterious(0) probably_damaging(0.988) TCGA-NK-A5CT-01 20 25388450 25388450 G T GINS1 5'UTR 0.29 TCGA-NK-A5CT-01 20 31656612 31656612 C A BPIFB3 Missense_Mutation p.L328M 0.26 tolerated(0.1) probably_damaging(1) TCGA-NK-A5CT-01 20 33894529 33894529 G A UQCC1 Silent p.F235F 0.20 TCGA-NK-A5CT-01 20 37638964 37638964 A T DHX35 Missense_Mutation p.M422L 0.25 tolerated(0.12) benign(0.186) TCGA-NK-A5CT-01 20 45000536 45000536 T C ELMO2 Missense_Mutation p.S497G 0.27 tolerated(0.28) benign(0.001) TCGA-NK-A5CT-01 20 50140227 50140227 G T NFATC2 Missense_Mutation p.P185T 0.26 deleterious(0) probably_damaging(0.999) TCGA-NK-A5CT-01 20 50769281 50769281 G A ZFP64 Missense_Mutation p.L484F 0.26 tolerated(0.13) probably_damaging(0.995) TCGA-NK-A5CT-01 20 947920 947920 G T RSPO4 Missense_Mutation p.D102E 0.26 deleterious(0) probably_damaging(0.971) TCGA-NK-A5CT-01 21 39774483 39774483 G T ERG Missense_Mutation p.N230K 0.46 tolerated(0.8) benign(0.012) TCGA-NK-A5CT-01 21 46066602 46066602 C A KRTAP10-11 Missense_Mutation p.T76K 0.35 tolerated(0.11) unknown(0) TCGA-NK-A5CT-01 21 47699913 47699913 T C MCM3AP Missense_Mutation p.N554S 0.31 tolerated(1) benign(0.002) TCGA-NK-A5CT-01 22 37334534 37334534 A C CSF2RB Missense_Mutation p.E895A 0.27 deleterious(0.01) benign(0.437) TCGA-NK-A5CT-01 2 103321093 103321093 G - SLC9A2 Frame_Shift_Del p.E646Kfs*9 0.22 TCGA-NK-A5CT-01 2 112733013 112733013 G T MERTK Missense_Mutation p.V370L 0.27 tolerated(0.7) benign(0.01) TCGA-NK-A5CT-01 2 128246774 128246774 C G IWS1 Missense_Mutation p.V733L 0.20 tolerated(0.07) possibly_damaging(0.626) TCGA-NK-A5CT-01 2 128324306 128324306 G A MYO7B Missense_Mutation p.R125H 0.34 tolerated(0.07) benign(0.015) TCGA-NK-A5CT-01 2 132021545 132021545 G T POTEE Silent p.V839V 0.16 TCGA-NK-A5CT-01 2 141680699 141680699 C A LRP1B Missense_Mutation p.G1052C 0.19 probably_damaging(0.999) TCGA-NK-A5CT-01 2 149856999 149856999 T C KIF5C Missense_Mutation p.I758T 0.28 tolerated(0.66) benign(0.001) TCGA-NK-A5CT-01 2 152466376 152466376 G C NEB Missense_Mutation p.P4093A 0.21 probably_damaging(0.99) TCGA-NK-A5CT-01 2 158115193 158115209 GTCATAGTCCCAGCAGT - GALNT5 Frame_Shift_Del p.S200Rfs*8 0.14 TCGA-NK-A5CT-01 2 159523071 159523071 C T PKP4 Silent p.L908L 0.30 TCGA-NK-A5CT-01 2 162242066 162242066 A G PSMD14 Missense_Mutation p.N185S 0.19 tolerated(0.23) benign(0.014) TCGA-NK-A5CT-01 2 166229854 166229854 G C SCN2A Missense_Mutation p.M1323I 0.24 deleterious(0.02) probably_damaging(0.986) TCGA-NK-A5CT-01 2 168103341 168103341 G A XIRP2 Silent p.V1813V 0.21 TCGA-NK-A5CT-01 2 171806224 171806224 G T GORASP2 Missense_Mutation p.G107V 0.14 deleterious(0) probably_damaging(0.962) TCGA-NK-A5CT-01 2 17896144 17896144 A T SMC6 Missense_Mutation p.Y572N 0.23 deleterious(0.01) probably_damaging(0.939) TCGA-NK-A5CT-01 2 179419254 179419254 C A TTN Missense_Mutation p.R29607L 0.23 TCGA-NK-A5CT-01 2 179424645 179424645 A G TTN Silent p.D28738D 0.29 TCGA-NK-A5CT-01 2 179590118 179590118 T C TTN Missense_Mutation p.N6938S 0.32 TCGA-NK-A5CT-01 2 179654802 179654802 A G TTN Missense_Mutation p.I614T 0.23 TCGA-NK-A5CT-01 2 180838475 180838475 G A CWC22 Silent p.T212T 0.22 TCGA-NK-A5CT-01 2 185803184 185803184 G T ZNF804A Nonsense_Mutation p.E1021* 0.21 TCGA-NK-A5CT-01 2 18765496 18765496 A G NT5C1B Missense_Mutation p.I310T 0.24 deleterious(0) possibly_damaging(0.611) TCGA-NK-A5CT-01 2 196877583 196877583 G T DNAH7 Missense_Mutation p.A306E 0.21 deleterious(0.02) benign(0.273) TCGA-NK-A5CT-01 2 198636593 198636593 G C BOLL Missense_Mutation p.P168A 0.36 tolerated(0.26) benign(0.087) TCGA-NK-A5CT-01 2 209138367 209138367 C G PIKFYVE Missense_Mutation p.Q78E 0.19 tolerated(1) benign(0.017) TCGA-NK-A5CT-01 2 219486314 219486314 C T PLCD4 Missense_Mutation p.L178F 0.28 deleterious(0) probably_damaging(0.999) TCGA-NK-A5CT-01 2 219846689 219846689 G T FEV Silent p.P139P 0.28 TCGA-NK-A5CT-01 2 220097314 220097314 G C ANKZF1 Missense_Mutation p.R156P 0.23 tolerated(0.21) benign(0.004) TCGA-NK-A5CT-01 2 220285588 220285588 C T DES Silent p.D312D 0.25 TCGA-NK-A5CT-01 2 232262546 232262546 C T B3GNT7 Missense_Mutation p.P39L 0.35 tolerated(0.53) benign(0.003) TCGA-NK-A5CT-01 2 233406231 233406231 T A CHRNG Silent p.L166L 0.24 TCGA-NK-A5CT-01 2 237172899 237172899 C T ASB18 Silent p.E30E 0.23 TCGA-NK-A5CT-01 2 30480391 30480391 G T LBH Missense_Mutation p.E74D 0.21 deleterious(0) probably_damaging(0.991) TCGA-NK-A5CT-01 2 33952336 33952336 C G AC009499.1 Intron 0.18 TCGA-NK-A5CT-01 2 39406201 39406201 G C CDKL4 3'UTR 0.28 TCGA-NK-A5CT-01 2 71043137 71043137 T A CLEC4F Missense_Mutation p.Q459L 0.27 deleterious(0) possibly_damaging(0.859) TCGA-NK-A5CT-01 2 71577101 71577101 G A ZNF638 Silent p.S339S 0.31 TCGA-NK-A5CT-01 2 71797749 71797749 A G DYSF Missense_Mutation p.I1036V 0.17 tolerated(0.06) benign(0.002) TCGA-NK-A5CT-01 2 85273230 85273230 G T KCMF1 Nonsense_Mutation p.E144* 0.12 TCGA-NK-A5CT-01 2 85779070 85779070 C A GGCX Missense_Mutation p.A492S 0.26 tolerated(0.37) benign(0.03) TCGA-NK-A5CT-01 2 89976321 89976321 G A IGKV2D-30 Silent p.R64R 0.18 TCGA-NK-A5CT-01 2 89986911 89986911 G T IGKV2D-29 Missense_Mutation p.K64N 0.09 deleterious(0.01) possibly_damaging(0.636) TCGA-NK-A5CT-01 2 89999460 89999460 A G IGKV2D-28 Missense_Mutation p.S88G 0.24 deleterious(0.02) benign(0.116) TCGA-NK-A5CT-01 2 90211964 90211964 C G IGKV3D-11 Missense_Mutation p.T19S 0.21 tolerated(1) benign(0.021) TCGA-NK-A5CT-01 2 95847196 95847196 G T ZNF2 Missense_Mutation p.G208V 0.21 deleterious(0) probably_damaging(0.985) TCGA-NK-A5CT-01 2 97757433 97757433 G C FAHD2B Missense_Mutation p.S4C 0.21 deleterious_low_confidence(0.04) probably_damaging(0.99) TCGA-NK-A5CT-01 2 98274689 98274689 C A ACTR1B Missense_Mutation p.D250Y 0.22 deleterious(0.03) benign(0.005) TCGA-NK-A5CT-01 2 98274691 98274691 A G ACTR1B Missense_Mutation p.L249P 0.21 deleterious(0.02) possibly_damaging(0.841) TCGA-NK-A5CT-01 2 98906995 98906995 C G VWA3B Missense_Mutation p.P1023A 0.15 tolerated(0.14) benign(0.027) TCGA-NK-A5CT-01 3 108818233 108818233 G A MORC1 Missense_Mutation p.T132I 0.45 deleterious(0) probably_damaging(1) TCGA-NK-A5CT-01 3 119246580 119246580 C A CD80 Intron 0.20 TCGA-NK-A5CT-01 3 121289569 121289569 C A ARGFX Missense_Mutation p.N3K 0.14 deleterious(0.01) benign(0.407) TCGA-NK-A5CT-01 3 121396264 121396264 C A GOLGB1 Missense_Mutation p.R2969S 0.18 benign(0.037) TCGA-NK-A5CT-01 3 121413820 121413820 G C GOLGB1 Silent p.L1850L 0.22 TCGA-NK-A5CT-01 3 130300573 130300573 T A COL6A6 Missense_Mutation p.V1239E 0.24 deleterious(0) possibly_damaging(0.878) TCGA-NK-A5CT-01 3 130452695 130452695 T C PIK3R4 Missense_Mutation p.T383A 0.20 deleterious(0.01) probably_damaging(0.916) TCGA-NK-A5CT-01 3 132319330 132319330 T G ACKR4 Missense_Mutation p.I30S 0.32 deleterious(0.01) benign(0.372) TCGA-NK-A5CT-01 3 148459164 148459164 T C AGTR1 Silent p.A114A 0.24 TCGA-NK-A5CT-01 3 148597621 148597621 G T CPA3 Missense_Mutation p.G174V 0.19 deleterious(0) probably_damaging(0.995) TCGA-NK-A5CT-01 3 150377879 150377879 C A FAM194A Missense_Mutation p.A598S 0.21 deleterious(0) probably_damaging(0.993) TCGA-NK-A5CT-01 3 153998374 153998375 - T DHX36 Frame_Shift_Ins p.R854Kfs*19 0.19 TCGA-NK-A5CT-01 3 155551313 155551313 C A SLC33A1 Missense_Mutation p.G404W 0.29 deleterious(0) probably_damaging(0.998) TCGA-NK-A5CT-01 3 155861041 155861041 C A KCNAB1 Intron 0.24 TCGA-NK-A5CT-01 3 169644760 169644760 C T SAMD7 Missense_Mutation p.S237L 0.22 tolerated(0.38) benign(0.016) TCGA-NK-A5CT-01 3 182665341 182665341 C A DCUN1D1 Missense_Mutation p.L200F 0.14 deleterious(0) probably_damaging(0.917) TCGA-NK-A5CT-01 3 183888454 183888454 G T DVL3 Missense_Mutation p.A688S 0.24 tolerated(0.49) possibly_damaging(0.694) TCGA-NK-A5CT-01 3 186435225 186435225 G T KNG1 5'UTR 0.35 TCGA-NK-A5CT-01 3 186980440 186980440 G - MASP1 Frame_Shift_Del p.G103Afs*94 0.26 TCGA-NK-A5CT-01 3 38647603 38647603 A G SCN5A Missense_Mutation p.F393L 0.35 deleterious(0) probably_damaging(0.992) TCGA-NK-A5CT-01 3 38770389 38770389 G T SCN10A Missense_Mutation p.R762S 0.31 deleterious(0) probably_damaging(1) TCGA-NK-A5CT-01 3 5024778 5024778 G - BHLHE40 Frame_Shift_Del p.G214Vfs*93 0.14 TCGA-NK-A5CT-01 3 52812508 52812508 C A ITIH1 Silent p.I97I 0.28 TCGA-NK-A5CT-01 3 9786793 9786793 G A BRPF1 Missense_Mutation p.E1008K 0.42 tolerated(0.07) probably_damaging(0.991) TCGA-NK-A5CT-01 4 103806450 103806450 C T CISD2 Missense_Mutation p.P61S 0.33 tolerated(0.06) benign(0.048) TCGA-NK-A5CT-01 4 119952908 119952908 C G SYNPO2 Nonsense_Mutation p.S993* 0.38 TCGA-NK-A5CT-01 4 128741682 128741682 C G HSPA4L Missense_Mutation p.L592V 0.28 tolerated(0.06) benign(0.208) TCGA-NK-A5CT-01 4 140432775 140432775 C T SETD7 3'UTR 0.24 TCGA-NK-A5CT-01 4 141313804 141313804 T C CLGN Missense_Mutation p.Y476C 0.35 deleterious(0.01) probably_damaging(0.928) TCGA-NK-A5CT-01 4 149356527 149356527 C A NR3C2 Nonsense_Mutation p.E496* 0.21 TCGA-NK-A5CT-01 4 149356529 149356529 T G NR3C2 Missense_Mutation p.Q495P 0.20 deleterious(0) possibly_damaging(0.507) TCGA-NK-A5CT-01 4 165890706 165890706 G T TRIM61 Missense_Mutation p.P150Q 0.24 deleterious(0.04) possibly_damaging(0.723) TCGA-NK-A5CT-01 4 30724233 30724233 G T PCDH7 Missense_Mutation p.D397Y 0.24 deleterious(0.03) probably_damaging(0.997) TCGA-NK-A5CT-01 4 30724712 30724712 G C PCDH7 Silent p.T556T 0.41 TCGA-NK-A5CT-01 4 66201726 66201726 C A EPHA5 Missense_Mutation p.D926Y 0.33 deleterious(0) possibly_damaging(0.903) TCGA-NK-A5CT-01 4 88584246 88584246 C T DMP1 Missense_Mutation p.S439L 0.32 deleterious(0) unknown(0) TCGA-NK-A5CT-01 5 110077780 110077780 G A SLC25A46 Missense_Mutation p.G106R 0.29 tolerated(0.06) benign(0.389) TCGA-NK-A5CT-01 5 114615429 114615429 G C CCDC112 Missense_Mutation p.F92L 0.12 tolerated(1) benign(0.009) TCGA-NK-A5CT-01 5 118970401 118970401 T A FAM170A Missense_Mutation p.C320S 0.24 tolerated_low_confidence(0.17) possibly_damaging(0.675) TCGA-NK-A5CT-01 5 132035910 132035910 C T KIF3A Missense_Mutation p.D642N 0.34 tolerated(0.36) benign(0) TCGA-NK-A5CT-01 5 140264136 140264136 G T PCDHA13 Silent p.G761G 0.31 TCGA-NK-A5CT-01 5 140769745 140769745 T A PCDHGB4 Missense_Mutation p.L765Q 0.31 deleterious(0.01) possibly_damaging(0.459) TCGA-NK-A5CT-01 5 140812180 140812180 G C PCDHGA12 Silent p.S618S 0.34 TCGA-NK-A5CT-01 5 14363987 14363987 C A TRIO Silent p.I846I 0.10 TCGA-NK-A5CT-01 5 150901203 150901203 G A FAT2 Silent p.L3651L 0.16 TCGA-NK-A5CT-01 5 167645370 167645370 G A TENM2 Missense_Mutation p.E1492K 0.31 deleterious(0) probably_damaging(0.953) TCGA-NK-A5CT-01 5 169810729 169810729 C A KCNMB1 Missense_Mutation p.W87L 0.32 tolerated(0.33) benign(0.023) TCGA-NK-A5CT-01 5 180052978 180052978 G A FLT4 Missense_Mutation p.H438Y 0.22 tolerated(0.15) possibly_damaging(0.808) TCGA-NK-A5CT-01 5 24491815 24491815 C A CDH10 Silent p.L582L 0.63 TCGA-NK-A5CT-01 5 35792447 35792447 A G SPEF2 Missense_Mutation p.I1485V 0.14 tolerated(0.05) probably_damaging(0.952) TCGA-NK-A5CT-01 5 37352887 37352887 G A NUP155 Missense_Mutation p.P170S 0.10 tolerated(0.12) benign(0.259) TCGA-NK-A5CT-01 5 38431326 38431326 C T EGFLAM Missense_Mutation p.S701F 0.15 deleterious(0) probably_damaging(0.998) TCGA-NK-A5CT-01 5 44310556 44310556 C A FGF10 Missense_Mutation p.M134I 0.09 tolerated(0.37) benign(0.133) TCGA-NK-A5CT-01 5 5460549 5460549 G T KIAA0947 Nonsense_Mutation p.E368* 0.12 TCGA-NK-A5CT-01 5 63890628 63890628 C A RGS7BP Silent p.P185P 0.25 TCGA-NK-A5CT-01 5 67592056 67592056 G C PIK3R1 Missense_Mutation p.W624C 0.35 deleterious(0) probably_damaging(1) TCGA-NK-A5CT-01 5 7897253 7897253 T C MTRR Silent p.V642V 0.14 TCGA-NK-A5CT-01 5 79746258 79746258 G T ZFYVE16 Missense_Mutation p.D1079Y 0.40 deleterious(0) probably_damaging(0.94) TCGA-NK-A5CT-01 6 108985147 108985147 G A FOXO3 Missense_Mutation p.D371N 0.24 deleterious(0) benign(0.17) TCGA-NK-A5CT-01 6 108985182 108985182 G C FOXO3 Silent p.L382L 0.11 TCGA-NK-A5CT-01 6 11768556 11768556 C A ADTRP Missense_Mutation p.G90W 0.21 deleterious(0.01) probably_damaging(0.994) TCGA-NK-A5CT-01 6 12015889 12015889 A T HIVEP1 Nonsense_Mutation p.R10* 0.17 TCGA-NK-A5CT-01 6 12123649 12123649 G C HIVEP1 Missense_Mutation p.Q1207H 0.20 tolerated(0.33) possibly_damaging(0.832) TCGA-NK-A5CT-01 6 127765273 127765273 G A KIAA0408 Missense_Mutation p.S689F 0.20 deleterious(0) probably_damaging(0.939) TCGA-NK-A5CT-01 6 129475799 129475799 T A LAMA2 Missense_Mutation p.C393S 0.24 deleterious(0) probably_damaging(1) TCGA-NK-A5CT-01 6 132892106 132892106 C A TAAR6 Missense_Mutation p.L216M 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-NK-A5CT-01 6 136589339 136589339 G A BCLAF1 Silent p.Y786Y 0.05 TCGA-NK-A5CT-01 6 137519395 137519395 C T IFNGR1 Missense_Mutation p.D415N 0.17 deleterious(0.01) benign(0.011) TCGA-NK-A5CT-01 6 137519499 137519499 G A IFNGR1 Missense_Mutation p.S380L 0.27 tolerated(0.65) benign(0.002) TCGA-NK-A5CT-01 6 146755620 146755620 C G GRM1 Silent p.S1091S 0.13 TCGA-NK-A5CT-01 6 160514925 160514925 G T IGF2R Intron 0.17 TCGA-NK-A5CT-01 6 163235257 163235257 G T PACRG Missense_Mutation p.G79C 0.21 deleterious(0) probably_damaging(0.999) TCGA-NK-A5CT-01 6 165756916 165756916 C T PDE10A Silent p.L687L 0.16 TCGA-NK-A5CT-01 6 165801854 165801854 A G PDE10A Missense_Mutation p.L582P 0.22 deleterious(0) probably_damaging(1) TCGA-NK-A5CT-01 6 166864648 166864648 C T RPS6KA2 Silent p.L391L 0.16 TCGA-NK-A5CT-01 6 26205101 26205101 G T HIST1H4E Missense_Mutation p.A77S 0.17 tolerated(0.07) benign(0.429) TCGA-NK-A5CT-01 6 26271182 26271182 G A HIST1H3G 3'UTR 0.17 TCGA-NK-A5CT-01 6 30138785 30138785 G T TRIM15 Missense_Mutation p.G294W 0.20 deleterious(0) probably_damaging(0.982) TCGA-NK-A5CT-01 6 31079763 31079763 C A C6orf15 Missense_Mutation p.D125Y 0.27 deleterious(0) probably_damaging(0.979) TCGA-NK-A5CT-01 6 32163305 32163305 G C NOTCH4 Missense_Mutation p.P1974R 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-NK-A5CT-01 6 32410268 32410268 C G HLA-DRA Missense_Mutation p.D42E 0.27 tolerated(0.36) benign(0.001) TCGA-NK-A5CT-01 6 32609868 32609868 G A HLA-DQA1 Missense_Mutation p.G151R 0.25 deleterious(0.02) probably_damaging(1) TCGA-NK-A5CT-01 6 46107648 46107648 C G ENPP4 Missense_Mutation p.P110A 0.31 tolerated(0.08) benign(0.144) TCGA-NK-A5CT-01 6 46135530 46135530 T A ENPP5 Missense_Mutation p.Y157F 0.19 deleterious(0) probably_damaging(0.999) TCGA-NK-A5CT-01 6 50696697 50696697 T A TFAP2D Missense_Mutation p.C243S 0.28 deleterious(0.02) probably_damaging(0.983) TCGA-NK-A5CT-01 6 57012165 57012165 A G ZNF451 Missense_Mutation p.K428E 0.24 deleterious(0.02) probably_damaging(0.993) TCGA-NK-A5CT-01 6 70948958 70948958 G C COL9A1 Missense_Mutation p.S704C 0.26 probably_damaging(0.975) TCGA-NK-A5CT-01 6 80749543 80749543 T C TTK Missense_Mutation p.I754T 0.24 deleterious(0) possibly_damaging(0.842) TCGA-NK-A5CT-01 6 87796093 87796093 G T CGA Missense_Mutation p.L50I 0.27 deleterious(0) benign(0.093) TCGA-NK-A5CT-01 6 87796094 87796094 T A CGA Silent p.I49I 0.26 TCGA-NK-A5CT-01 7 100677325 100677325 G T MUC17 Silent p.L876L 0.25 TCGA-NK-A5CT-01 7 103270480 103270480 C T RELN Missense_Mutation p.S870N 0.11 tolerated(0.24) possibly_damaging(0.501) TCGA-NK-A5CT-01 7 108524083 108524083 G A C7orf66 Missense_Mutation p.P110L 0.13 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-NK-A5CT-01 7 11075351 11075351 C T PHF14 Silent p.L514L 0.20 TCGA-NK-A5CT-01 7 122131374 122131374 G A CADPS2 Missense_Mutation p.P548L 0.41 deleterious(0.02) benign(0.223) TCGA-NK-A5CT-01 7 127230147 127230147 G T ARF5 Missense_Mutation p.D96Y 0.22 deleterious_low_confidence(0) benign(0.433) TCGA-NK-A5CT-01 7 128454759 128454759 G T CCDC136 Missense_Mutation p.G944V 0.19 deleterious(0) probably_damaging(1) TCGA-NK-A5CT-01 7 142231795 142231795 G A TRBV10-1 Missense_Mutation p.A41V 0.22 deleterious(0.03) benign(0.003) TCGA-NK-A5CT-01 7 142561864 142561864 G C EPHB6 Missense_Mutation p.R102S 0.21 deleterious(0) probably_damaging(0.999) TCGA-NK-A5CT-01 7 147844673 147844673 G A CNTNAP2 Nonsense_Mutation p.W882* 0.26 TCGA-NK-A5CT-01 7 148483645 148483645 C T CUL1 Missense_Mutation p.S434F 0.24 deleterious(0) probably_damaging(0.927) TCGA-NK-A5CT-01 7 21468913 21468913 C G SP4 Missense_Mutation p.Q44E 0.31 deleterious(0) possibly_damaging(0.585) TCGA-NK-A5CT-01 7 23768858 23768858 A T STK31 Missense_Mutation p.Q158L 0.21 tolerated(0.35) benign(0.017) TCGA-NK-A5CT-01 7 23794064 23794064 C G STK31 Missense_Mutation p.Q422E 0.25 deleterious(0.01) probably_damaging(0.97) TCGA-NK-A5CT-01 7 29152374 29152374 G T CPVL Silent p.L78L 0.22 TCGA-NK-A5CT-01 7 31682893 31682893 G C CCDC129 Missense_Mutation p.E663Q 0.31 tolerated(0.1) possibly_damaging(0.548) TCGA-NK-A5CT-01 7 43484370 43484370 G T HECW1 Missense_Mutation p.R533S 0.21 deleterious_low_confidence(0.05) benign(0.371) TCGA-NK-A5CT-01 7 43484793 43484793 C G HECW1 Missense_Mutation p.D674E 0.17 deleterious_low_confidence(0.05) probably_damaging(0.973) TCGA-NK-A5CT-01 7 43485067 43485067 G C HECW1 Missense_Mutation p.A766P 0.21 tolerated_low_confidence(0.3) benign(0) TCGA-NK-A5CT-01 7 5391690 5391690 C A TNRC18 Missense_Mutation p.D1744Y 0.30 probably_damaging(0.949) TCGA-NK-A5CT-01 7 62752165 62752165 T C ZNF733P RNA 0.29 TCGA-NK-A5CT-01 7 70597874 70597874 G T WBSCR17 Missense_Mutation p.R29L 0.19 deleterious_low_confidence(0) benign(0.17) TCGA-NK-A5CT-01 7 97617757 97617757 C G OCM2 Missense_Mutation p.Q55H 0.29 deleterious(0.01) benign(0.263) TCGA-NK-A5CT-01 7 99767994 99767994 A G GPC2 Silent p.D533D 0.14 TCGA-NK-A5CT-01 8 10285688 10285688 A T MSRA Missense_Mutation p.T192S 0.27 deleterious(0.03) benign(0.311) TCGA-NK-A5CT-01 8 105503602 105503602 C T LRP12 Missense_Mutation p.E627K 0.21 tolerated(0.48) benign(0.069) TCGA-NK-A5CT-01 8 110477198 110477198 C T PKHD1L1 Missense_Mutation p.L2713F 0.22 deleterious(0.04) benign(0.352) TCGA-NK-A5CT-01 8 113237040 113237040 C G CSMD3 Missense_Mutation p.R3695P 0.25 deleterious(0) probably_damaging(0.942) TCGA-NK-A5CT-01 8 113353704 113353704 A T CSMD3 Splice_Site p.X2218_splice 0.22 TCGA-NK-A5CT-01 8 113697783 113697783 T A CSMD3 Missense_Mutation p.K778N 0.31 deleterious(0.01) probably_damaging(0.99) TCGA-NK-A5CT-01 8 116632234 116632234 C G TRPS1 Missense_Mutation p.G31R 0.21 deleterious_low_confidence(0.02) benign(0.33) TCGA-NK-A5CT-01 8 125029950 125029950 C T FER1L6 Nonsense_Mutation p.Q669* 0.19 TCGA-NK-A5CT-01 8 142451291 142451291 C G CTD-3064M3.7 3'Flank 0.16 TCGA-NK-A5CT-01 8 144995435 144995435 C A PLEC Missense_Mutation p.G2989C 0.20 probably_damaging(0.966) TCGA-NK-A5CT-01 8 21562522 21562522 C T GFRA2 Silent p.R340R 0.35 TCGA-NK-A5CT-01 8 23057399 23057399 C T TNFRSF10A Silent p.R277R 0.24 TCGA-NK-A5CT-01 8 38854608 38854608 C T ADAM9 Missense_Mutation p.S9L 0.23 tolerated_low_confidence(0.68) benign(0.006) TCGA-NK-A5CT-01 8 42275284 42275284 C T SLC20A2 3'UTR 0.36 TCGA-NK-A5CT-01 8 52322062 52322062 C A PXDNL Nonsense_Mutation p.G708* 0.26 TCGA-NK-A5CT-01 8 77616489 77616489 C A ZFHX4 Missense_Mutation p.R56S 0.26 possibly_damaging(0.555) TCGA-NK-A5CT-01 8 77617588 77617588 C T ZFHX4 Missense_Mutation p.S422F 0.30 possibly_damaging(0.683) TCGA-NK-A5CT-01 8 77776360 77776360 G T ZFHX4 Missense_Mutation p.L3470F 0.28 probably_damaging(0.994) TCGA-NK-A5CT-01 8 92364065 92364065 G A SLC26A7 Missense_Mutation p.V390I 0.26 tolerated(0.29) benign(0.023) TCGA-NK-A5CT-01 8 94747751 94747751 G A RBM12B Silent p.D296D 0.26 TCGA-NK-A5CT-01 8 99441587 99441587 G A KCNS2 Silent p.T460T 0.29 TCGA-NK-A5CT-01 9 125932304 125932304 G C STRBP Missense_Mutation p.Q138E 0.30 tolerated(1) benign(0) TCGA-NK-A5CT-01 9 130210797 130210797 C A RPL12 Intron 0.34 TCGA-NK-A5CT-01 9 131456289 131456289 G T SET Missense_Mutation p.D273Y 0.56 deleterious_low_confidence(0.02) unknown(0) TCGA-NK-A5CT-01 9 16552564 16552564 C A BNC2 Missense_Mutation p.W211C 0.22 deleterious(0) probably_damaging(0.998) TCGA-NK-A5CT-01 9 18906817 18906817 G T ADAMTSL1 Missense_Mutation p.A1697S 0.38 tolerated(0.77) benign(0.006) TCGA-NK-A5CT-01 9 32550808 32550808 C G TOPORS Silent p.A54A 0.46 TCGA-NK-A5CT-01 9 7799748 7799748 G C TMEM261 5'UTR 0.32 TCGA-NK-A5CT-01 9 90322255 90322255 C T DAPK1 Silent p.S1423S 0.22 TCGA-NK-A5CT-01 9 98678526 98678526 T C ERCC6L2 Missense_Mutation p.L334S 0.40 deleterious(0) probably_damaging(0.999) TCGA-NK-A5CT-01 X 100548019 100548019 C A TAF7L Missense_Mutation p.E5D 0.46 tolerated(0.09) benign(0.006) TCGA-NK-A5CT-01 X 106882586 106882586 G A PRPS1 Missense_Mutation p.E62K 0.54 tolerated(0.34) benign(0.021) TCGA-NK-A5CT-01 X 135049639 135049639 G C MMGT1 Missense_Mutation p.T49R 0.45 deleterious(0.01) probably_damaging(0.979) TCGA-NK-A5CT-01 X 140995608 140995608 C A MAGEC1 Silent p.A806A 0.44 TCGA-NK-A5CT-01 X 1536903 1536903 G T ASMTL Silent p.P495P 0.20 TCGA-NK-A5CT-01 X 154158873 154158873 C G F8 Missense_Mutation p.L1064F 0.55 deleterious(0.01) possibly_damaging(0.905) TCGA-NK-A5CT-01 X 27765068 27765068 T A DCAF8L2 Missense_Mutation p.L19Q 0.46 deleterious_low_confidence(0) possibly_damaging(0.894) TCGA-NK-A5CT-01 X 2876371 2876371 C G ARSE Silent p.L43L 0.28 TCGA-NK-A5CT-01 X 55172645 55172645 C G FAM104B Missense_Mutation p.D75H 0.36 tolerated(0.09) benign(0.112) TCGA-NK-A5CT-01 X 73041759 73041759 A G XIST RNA 0.58 TCGA-NK-A5CT-01 X 79945323 79945323 G A BRWD3 Silent p.L1251L 0.44 TCGA-NK-A5CT-01 X 91132430 91132430 A G PCDH11X Silent p.T397T 0.08 TCGA-NK-A5CT-01 Y 4967057 4967057 C A PCDH11Y Missense_Mutation p.Q480K 0.58 deleterious(0.02) benign(0.381) TCGA-NK-A5CX-01 10 96701749 96701749 A G CYP2C9 Silent p.P101P 0.34 TCGA-NK-A5CX-01 11 113934870 113934871 CG T ZBTB16 Frame_Shift_Del p.P283Lfs*64 0.13 TCGA-NK-A5CX-01 11 114401425 114401425 G T NXPE1 5'UTR 0.23 TCGA-NK-A5CX-01 11 124134790 124134790 C A OR8G5 Missense_Mutation p.T23N 0.25 tolerated_low_confidence(0.36) benign(0.001) TCGA-NK-A5CX-01 11 44939574 44939574 C A TSPAN18 Missense_Mutation p.L104M 0.13 tolerated(0.06) probably_damaging(0.986) TCGA-NK-A5CX-01 11 4661742 4661742 T A OR51D1 Missense_Mutation p.L241Q 0.24 deleterious(0) probably_damaging(1) TCGA-NK-A5CX-01 11 4674729 4674729 C G OR51E1 3'UTR 0.17 TCGA-NK-A5CX-01 11 47772752 47772752 C A FNBP4 Missense_Mutation p.W243L 0.16 deleterious(0) probably_damaging(1) TCGA-NK-A5CX-01 11 56020334 56020334 C A OR5T3 Missense_Mutation p.S220Y 0.12 deleterious(0) probably_damaging(0.968) TCGA-NK-A5CX-01 11 56230659 56230659 G T OR5M9 Silent p.S73S 0.13 TCGA-NK-A5CX-01 11 56408974 56408974 G T OR5AP2 Missense_Mutation p.H314Q 0.19 tolerated(0.23) possibly_damaging(0.589) TCGA-NK-A5CX-01 11 56468490 56468490 C A OR9G1 Silent p.P209P 0.09 TCGA-NK-A5CX-01 11 5758674 5758674 G C OR56B1 Missense_Mutation p.A310P 0.14 deleterious(0) benign(0.16) TCGA-NK-A5CX-01 11 6048132 6048132 G C OR56A1 Missense_Mutation p.T268R 0.15 deleterious(0.01) possibly_damaging(0.765) TCGA-NK-A5CX-01 11 617963 617963 G T CDHR5 Silent p.G703G 0.24 TCGA-NK-A5CX-01 11 621878 621878 T A CDHR5 Silent p.S113S 0.12 TCGA-NK-A5CX-01 11 62296872 62296872 C G AHNAK Missense_Mutation p.V1673L 0.13 benign(0.198) TCGA-NK-A5CX-01 11 64323474 64323474 G T SLC22A11 Translation_Start_Site p.M1? 0.18 deleterious(0) probably_damaging(0.999) TCGA-NK-A5CX-01 11 71943671 71943671 A G INPPL1 Missense_Mutation p.R572G 0.32 deleterious(0) probably_damaging(0.999) TCGA-NK-A5CX-01 11 76731395 76731395 A G ACER3 3'UTR 0.35 TCGA-NK-A5CX-01 11 88781112 88781112 A T GRM5 5'UTR 0.30 TCGA-NK-A5CX-01 12 113822701 113822701 G A PLBD2 Silent p.P388P 0.14 TCGA-NK-A5CX-01 12 14849333 14849333 G T GUCY2C Missense_Mutation p.P17H 0.29 tolerated_low_confidence(0.54) probably_damaging(0.917) TCGA-NK-A5CX-01 12 40697806 40697806 A T LRRK2 Missense_Mutation p.H1216L 0.15 tolerated(0.75) benign(0.097) TCGA-NK-A5CX-01 12 4481864 4481864 C T FGF23 Splice_Site p.X71_splice 0.11 TCGA-NK-A5CX-01 12 6925468 6925468 C G CD4 Missense_Mutation p.P285R 0.18 deleterious(0.02) possibly_damaging(0.87) TCGA-NK-A5CX-01 12 69652542 69652542 G T CPSF6 Missense_Mutation p.L289F 0.21 tolerated(0.13) unknown(0) TCGA-NK-A5CX-01 12 78415535 78415535 C T NAV3 Missense_Mutation p.S639L 0.27 deleterious(0) benign(0.091) TCGA-NK-A5CX-01 13 103053872 103053872 T A FGF14 Missense_Mutation p.M53L 0.12 tolerated(0.24) benign(0.002) TCGA-NK-A5CX-01 13 114748652 114748652 T C RASA3 3'UTR 0.09 TCGA-NK-A5CX-01 13 25363836 25363836 G T RNF17 Missense_Mutation p.R287S 0.12 tolerated(0.05) possibly_damaging(0.879) TCGA-NK-A5CX-01 13 25480968 25480968 T A CENPJ Missense_Mutation p.N403I 0.07 deleterious(0.02) benign(0.11) TCGA-NK-A5CX-01 13 38144807 38144807 C A POSTN Splice_Site p.X727_splice 0.22 TCGA-NK-A5CX-01 13 38158235 38158235 G A POSTN Nonsense_Mutation p.Q372* 0.16 TCGA-NK-A5CX-01 13 70681759 70681759 G T KLHL1 Missense_Mutation p.P25T 0.07 tolerated_low_confidence(0.06) benign(0.339) TCGA-NK-A5CX-01 13 70681760 70681760 G T KLHL1 Missense_Mutation p.H24Q 0.09 deleterious_low_confidence(0) benign(0.092) TCGA-NK-A5CX-01 14 107013046 107013046 C A IGHV3-49 Silent p.A83A 0.36 TCGA-NK-A5CX-01 14 35591181 35591181 A T PPP2R3C 5'UTR 0.11 TCGA-NK-A5CX-01 14 66975309 66975309 G A GPHN Missense_Mutation p.V22M 0.12 deleterious(0.04) possibly_damaging(0.905) TCGA-NK-A5CX-01 14 74874300 74874300 C A SYNDIG1L Missense_Mutation p.G219C 0.43 tolerated(0.22) probably_damaging(0.968) TCGA-NK-A5CX-01 14 95108140 95108140 A G SERPINA13P RNA 0.21 TCGA-NK-A5CX-01 14 96707596 96707596 G A BDKRB2 Missense_Mutation p.D311N 0.10 tolerated(0.06) possibly_damaging(0.661) TCGA-NK-A5CX-01 15 22368596 22368596 C A OR4M2 Silent p.T7T 0.15 TCGA-NK-A5CX-01 15 22473188 22473188 G T IGHV4OR15-8 Missense_Mutation p.P28Q 0.18 deleterious(0.01) possibly_damaging(0.868) TCGA-NK-A5CX-01 15 23889972 23889972 G T MAGEL2 Missense_Mutation p.P370Q 0.26 deleterious(0) probably_damaging(0.949) TCGA-NK-A5CX-01 15 25220630 25220630 T A SNRPN Nonsense_Mutation p.C43* 0.34 TCGA-NK-A5CX-01 15 42737106 42737106 C A ZNF106 Missense_Mutation p.M1070I 0.29 tolerated(0.07) benign(0.046) TCGA-NK-A5CX-01 16 20084948 20084948 C A GPR139 5'UTR 0.62 TCGA-NK-A5CX-01 16 20335183 20335183 A T GP2 Missense_Mutation p.Y164N 0.44 deleterious(0) probably_damaging(1) TCGA-NK-A5CX-01 16 2143014 2143014 G A PKD1 Silent p.Y3699Y 0.36 TCGA-NK-A5CX-01 17 10430021 10430021 G T MYH2 Missense_Mutation p.A1361D 0.33 deleterious(0.02) possibly_damaging(0.649) TCGA-NK-A5CX-01 17 26955461 26955461 C A KIAA0100 Silent p.G1472G 0.33 TCGA-NK-A5CX-01 17 26955462 26955462 C A KIAA0100 Missense_Mutation p.G1472V 0.32 deleterious(0.01) benign(0.342) TCGA-NK-A5CX-01 17 34067468 34067468 A C RASL10B Missense_Mutation p.H86P 0.31 tolerated(0.23) probably_damaging(0.995) TCGA-NK-A5CX-01 17 36288233 36288233 C T TBC1D3F Missense_Mutation p.R107W 0.08 tolerated(0.06) benign(0.344) TCGA-NK-A5CX-01 17 3660305 3660305 G T ITGAE Missense_Mutation p.L382M 0.33 deleterious(0) probably_damaging(1) TCGA-NK-A5CX-01 17 41362160 41362160 G A NBR1 3'UTR 0.41 TCGA-NK-A5CX-01 17 7487154 7487154 G A MPDU1 5'UTR 0.39 TCGA-NK-A5CX-01 17 7577142 7577142 C T TP53 Missense_Mutation p.G266R 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-NK-A5CX-01 18 10550097 10550097 G C NAPG Missense_Mutation p.L273F 0.26 deleterious(0) probably_damaging(0.991) TCGA-NK-A5CX-01 18 3581884 3581884 T A DLGAP1 Missense_Mutation p.I652F 0.14 deleterious(0) probably_damaging(0.98) TCGA-NK-A5CX-01 18 42281647 42281647 G T SETBP1 Silent p.R112R 0.06 TCGA-NK-A5CX-01 18 60241292 60241292 A T ZCCHC2 Missense_Mutation p.T660S 0.09 tolerated(0.11) benign(0.068) TCGA-NK-A5CX-01 18 7025981 7025981 T C LAMA1 Missense_Mutation p.N800S 0.36 deleterious(0.02) probably_damaging(0.991) TCGA-NK-A5CX-01 19 10221246 10221246 G T PPAN Missense_Mutation p.Q329H 0.38 deleterious(0) probably_damaging(0.999) TCGA-NK-A5CX-01 19 15508080 15508080 C G AKAP8L Missense_Mutation p.E473Q 0.28 deleterious(0) probably_damaging(0.982) TCGA-NK-A5CX-01 19 15508081 15508081 C A AKAP8L Missense_Mutation p.M472I 0.29 deleterious(0.05) benign(0.028) TCGA-NK-A5CX-01 19 22939824 22939824 C A ZNF99 3'Flank 0.24 TCGA-NK-A5CX-01 19 35850511 35850511 C A FFAR3 Missense_Mutation p.P240H 0.16 deleterious(0) probably_damaging(1) TCGA-NK-A5CX-01 19 35850512 35850512 C A FFAR3 Silent p.P240P 0.15 TCGA-NK-A5CX-01 19 39019280 39019280 C T RYR1 Missense_Mutation p.A3660V 0.26 benign(0.001) TCGA-NK-A5CX-01 19 39926568 39926568 G A RPS16 5'UTR 0.32 TCGA-NK-A5CX-01 19 41096927 41096927 G T SHKBP1 Silent p.G646G 0.18 TCGA-NK-A5CX-01 19 45810105 45810105 A C CKM Missense_Mutation p.V350G 0.21 deleterious(0) probably_damaging(0.999) TCGA-NK-A5CX-01 19 46094352 46094352 C T GPR4 Missense_Mutation p.C258Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-NK-A5CX-01 19 464026 464026 C T ODF3L2 Missense_Mutation p.A230T 0.33 tolerated(0.49) benign(0.063) TCGA-NK-A5CX-01 19 47440540 47440540 G C ARHGAP35 Missense_Mutation p.R1234P 0.33 tolerated(0.15) probably_damaging(0.999) TCGA-NK-A5CX-01 19 49558137 49558137 G - CGB7 Frame_Shift_Del p.V49Sfs*13 0.13 TCGA-NK-A5CX-01 19 51920087 51920087 C A SIGLEC10 Missense_Mutation p.W180L 0.21 deleterious(0) probably_damaging(1) TCGA-NK-A5CX-01 19 55049183 55049183 G A KIR3DX1 Splice_Site p.X317_splice 0.19 TCGA-NK-A5CX-01 19 55049184 55049184 G T KIR3DX1 Nonsense_Mutation p.E317* 0.19 TCGA-NK-A5CX-01 19 55174394 55174394 C A LILRB4 5'UTR 0.26 TCGA-NK-A5CX-01 19 55174395 55174395 C A LILRB4 5'UTR 0.26 TCGA-NK-A5CX-01 19 55450707 55450707 C A NLRP7 Missense_Mutation p.A494S 0.27 tolerated(0.82) benign(0.032) TCGA-NK-A5CX-01 19 55785792 55785792 C A HSPBP1 Missense_Mutation p.R205L 0.25 deleterious(0.01) probably_damaging(0.966) TCGA-NK-A5CX-01 1 114215246 114215246 A G MAGI3 Silent p.L976L 0.16 TCGA-NK-A5CX-01 1 114964145 114964145 G A TRIM33 Silent p.T658T 0.18 TCGA-NK-A5CX-01 1 115110763 115110763 C A BCAS2 Silent p.R222R 0.08 TCGA-NK-A5CX-01 1 115110764 115110764 C T BCAS2 Missense_Mutation p.R222Q 0.08 tolerated_low_confidence(0.92) benign(0.001) TCGA-NK-A5CX-01 1 152057945 152057945 G T TCHHL1 Missense_Mutation p.T738K 0.23 tolerated(0.44) benign(0.015) TCGA-NK-A5CX-01 1 152280511 152280511 G T FLG Missense_Mutation p.S2284Y 0.14 possibly_damaging(0.608) TCGA-NK-A5CX-01 1 152280684 152280684 G T FLG Silent p.G2226G 0.23 TCGA-NK-A5CX-01 1 152285858 152285858 C G FLG Missense_Mutation p.D502H 0.25 possibly_damaging(0.674) TCGA-NK-A5CX-01 1 156876561 156876561 G A PEAR1 Missense_Mutation p.C178Y 0.16 deleterious(0) probably_damaging(0.99) TCGA-NK-A5CX-01 1 158622394 158622394 G T SPTA1 Missense_Mutation p.Q1080K 0.18 tolerated(0.28) probably_damaging(0.991) TCGA-NK-A5CX-01 1 158622395 158622395 C T SPTA1 Silent p.L1079L 0.18 TCGA-NK-A5CX-01 1 161495877 161495877 G T HSPA6 Nonsense_Mutation p.E477* 0.11 TCGA-NK-A5CX-01 1 17313657 17313657 C A ATP13A2 Silent p.R989R 0.33 TCGA-NK-A5CX-01 1 176671807 176671807 G C PAPPA2 Missense_Mutation p.E1101Q 0.29 deleterious(0.01) probably_damaging(0.987) TCGA-NK-A5CX-01 1 190195404 190195404 G T BRINP3 Missense_Mutation p.Q257K 0.14 tolerated(0.28) benign(0.057) TCGA-NK-A5CX-01 1 210856998 210856998 C A KCNH1 Missense_Mutation p.R865S 0.24 tolerated_low_confidence(0.16) benign(0.016) TCGA-NK-A5CX-01 1 237870324 237870324 T C RYR2 Missense_Mutation p.V3219A 0.13 benign(0.066) TCGA-NK-A5CX-01 1 237947352 237947352 C T RYR2 Nonsense_Mutation p.R4114* 0.29 TCGA-NK-A5CX-01 1 241725482 241725482 C G KMO Silent p.P155P 0.15 TCGA-NK-A5CX-01 1 247012990 247012990 C A AHCTF1 Missense_Mutation p.L2115F 0.12 tolerated(0.29) benign(0.02) TCGA-NK-A5CX-01 1 247768910 247768910 C G OR2G3 Missense_Mutation p.S8C 0.21 tolerated(0.07) possibly_damaging(0.592) TCGA-NK-A5CX-01 1 37947340 37947340 T C ZC3H12A Missense_Mutation p.V241A 0.11 deleterious(0) probably_damaging(0.999) TCGA-NK-A5CX-01 1 39853175 39853175 T A MACF1 Silent p.L2825L 0.21 TCGA-NK-A5CX-01 1 43828634 43828634 G A CDC20 Missense_Mutation p.R445Q 0.15 deleterious(0) probably_damaging(0.991) TCGA-NK-A5CX-01 1 74507415 74507415 C G LRRIQ3 Missense_Mutation p.L400F 0.20 tolerated(0.57) benign(0.316) TCGA-NK-A5CX-01 1 89206769 89206769 G T PKN2 Missense_Mutation p.K49N 0.14 deleterious(0) probably_damaging(0.969) TCGA-NK-A5CX-01 20 10030131 10030131 G C ANKEF1 Missense_Mutation p.R305P 0.21 deleterious(0) possibly_damaging(0.506) TCGA-NK-A5CX-01 20 25485680 25485681 CC A NINL Frame_Shift_Del p.G184Vfs*33 0.28 TCGA-NK-A5CX-01 20 33874530 33874530 G A FAM83C Silent p.T684T 0.25 TCGA-NK-A5CX-01 20 400063 400063 C T RBCK1 Missense_Mutation p.P178L 0.17 tolerated(0.06) benign(0.001) TCGA-NK-A5CX-01 20 5294648 5294648 T C PROKR2 Missense_Mutation p.H123R 0.29 tolerated(0.05) probably_damaging(0.986) TCGA-NK-A5CX-01 20 60854268 60854268 A G OSBPL2 Missense_Mutation p.S183G 0.20 deleterious(0) probably_damaging(0.927) TCGA-NK-A5CX-01 20 61881322 61881322 C T NKAIN4 Missense_Mutation p.G53S 0.14 deleterious(0.02) benign(0.376) TCGA-NK-A5CX-01 21 10969122 10969122 G C TPTE Missense_Mutation p.H42Q 0.04 tolerated(0.58) benign(0.001) TCGA-NK-A5CX-01 21 40571367 40571367 G A BRWD1 Missense_Mutation p.R1659W 0.13 deleterious(0) probably_damaging(0.998) TCGA-NK-A5CX-01 21 45798982 45798982 G T TRPM2 Missense_Mutation p.D373Y 0.13 deleterious(0) possibly_damaging(0.492) TCGA-NK-A5CX-01 21 47966828 47966828 G C DIP2A Missense_Mutation p.D799H 0.18 deleterious(0) probably_damaging(0.999) TCGA-NK-A5CX-01 22 22127216 22127216 T C MAPK1 Silent p.V304V 0.14 TCGA-NK-A5CX-01 22 35481841 35481841 C A ISX 3'UTR 0.25 TCGA-NK-A5CX-01 22 43924856 43924856 C T EFCAB6 Splice_Site p.X1462_splice 0.29 TCGA-NK-A5CX-01 2 102626094 102626094 A G IL1R2 Silent p.V46V 0.19 TCGA-NK-A5CX-01 2 11355200 11355200 T C ROCK2 Missense_Mutation p.N568D 0.17 deleterious(0.01) possibly_damaging(0.735) TCGA-NK-A5CX-01 2 118583023 118583023 G T DDX18 Nonsense_Mutation p.G457* 0.17 TCGA-NK-A5CX-01 2 118583024 118583024 G T DDX18 Missense_Mutation p.G457V 0.18 deleterious(0) probably_damaging(1) TCGA-NK-A5CX-01 2 120199158 120199158 G A SCTR Silent p.V386V 0.29 TCGA-NK-A5CX-01 2 128388833 128388833 C A MYO7B Missense_Mutation p.R1638S 0.11 tolerated(0.08) benign(0.241) TCGA-NK-A5CX-01 2 15608572 15608572 T C NBAS Missense_Mutation p.Q604R 0.18 tolerated(0.15) benign(0.012) TCGA-NK-A5CX-01 2 179418301 179418301 A G TTN Missense_Mutation p.S29811P 0.16 TCGA-NK-A5CX-01 2 179453543 179453543 G T TTN Missense_Mutation p.P20970Q 0.09 TCGA-NK-A5CX-01 2 196825322 196825323 GG - DNAH7 Frame_Shift_Del p.P851Qfs*19 0.16 TCGA-NK-A5CX-01 2 196825636 196825636 C A DNAH7 Missense_Mutation p.G747C 0.13 deleterious(0.01) probably_damaging(0.987) TCGA-NK-A5CX-01 2 204259500 204259500 G T ABI2 Missense_Mutation p.R213L 0.11 deleterious(0.01) possibly_damaging(0.659) TCGA-NK-A5CX-01 2 205829887 205829887 T A PARD3B Missense_Mutation p.F79I 0.10 deleterious(0) possibly_damaging(0.557) TCGA-NK-A5CX-01 2 220168522 220168522 A G PTPRN Silent p.Y104Y 0.18 TCGA-NK-A5CX-01 2 227964385 227964385 C A COL4A4 Silent p.G350G 0.09 TCGA-NK-A5CX-01 2 241621907 241621907 C A AQP12B Silent p.A116A 0.12 TCGA-NK-A5CX-01 2 29940563 29940563 C A ALK Missense_Mutation p.G223V 0.13 deleterious_low_confidence(0) benign(0.255) TCGA-NK-A5CX-01 2 74074729 74074729 G T STAMBP Silent p.V197V 0.24 TCGA-NK-A5CX-01 2 74779546 74779546 A T LOXL3 Missense_Mutation p.D72E 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-NK-A5CX-01 2 88888286 88888286 G A EIF2AK3 Silent p.P433P 0.13 TCGA-NK-A5CX-01 2 89442091 89442091 G A IGKV3-20 Missense_Mutation p.A105V 0.18 deleterious(0.01) probably_damaging(0.988) TCGA-NK-A5CX-01 3 108572882 108572882 T C TRAT1 3'UTR 0.29 TCGA-NK-A5CX-01 3 113378832 113378832 A G KIAA2018 Missense_Mutation p.V566A 0.18 benign(0.123) TCGA-NK-A5CX-01 3 121388071 121388071 T C GOLGB1 Silent p.Q3103Q 0.31 TCGA-NK-A5CX-01 3 124385353 124385353 C A KALRN Missense_Mutation p.L226M 0.25 tolerated(0.16) benign(0.429) TCGA-NK-A5CX-01 3 93615430 93615430 C A PROS1 Nonsense_Mutation p.E319* 0.33 TCGA-NK-A5CX-01 3 95374412 95374412 G T MTHFD2P1 RNA 0.29 TCGA-NK-A5CX-01 3 95374413 95374413 G T MTHFD2P1 RNA 0.28 TCGA-NK-A5CX-01 3 98241557 98241557 T A CLDND1 Intron 0.56 TCGA-NK-A5CX-01 3 99648739 99648739 G T FILIP1L Silent p.T129T 0.22 TCGA-NK-A5CX-01 4 162376217 162376217 G C FSTL5 Missense_Mutation p.Q594E 0.13 tolerated(0.24) benign(0.009) TCGA-NK-A5CX-01 4 175898143 175898143 G T ADAM29 Missense_Mutation p.E489D 0.13 tolerated(0.93) benign(0.004) TCGA-NK-A5CX-01 4 22694616 22694616 C A GBA3 5'UTR 0.19 TCGA-NK-A5CX-01 4 52729863 52729863 G A DCUN1D4 Missense_Mutation p.D42N 0.13 tolerated_low_confidence(0.06) benign(0.084) TCGA-NK-A5CX-01 4 5975531 5975531 C A C4orf50 Missense_Mutation p.R562M 0.09 deleterious(0) probably_damaging(0.999) TCGA-NK-A5CX-01 4 6303433 6303433 G C WFS1 Silent p.L637L 0.11 TCGA-NK-A5CX-01 4 69817007 69817007 T C UGT2A3 Missense_Mutation p.M158V 0.15 tolerated(0.77) benign(0.002) TCGA-NK-A5CX-01 4 70346328 70346328 C T UGT2B4 3'UTR 0.20 TCGA-NK-A5CX-01 4 83378143 83378143 A G ENOPH1 Missense_Mutation p.I200V 0.18 tolerated(0.22) benign(0.295) TCGA-NK-A5CX-01 5 13824372 13824372 T A DNAH5 Missense_Mutation p.N2172I 0.36 possibly_damaging(0.904) TCGA-NK-A5CX-01 5 140503604 140503604 C T PCDHB4 Missense_Mutation p.A675V 0.08 tolerated_low_confidence(1) benign(0.002) TCGA-NK-A5CX-01 5 140515135 140515135 A G PCDHB5 Missense_Mutation p.E40G 0.26 deleterious_low_confidence(0.01) benign(0.307) TCGA-NK-A5CX-01 5 159840540 159840540 C G SLU7 Missense_Mutation p.G165R 0.26 deleterious(0) probably_damaging(0.998) TCGA-NK-A5CX-01 5 176827139 176827139 A T PFN3 3'UTR 0.22 TCGA-NK-A5CX-01 5 180432668 180432668 C A BTNL3 Silent p.P399P 0.25 TCGA-NK-A5CX-01 5 19483582 19483582 G T CDH18 Silent p.I570I 0.32 TCGA-NK-A5CX-01 5 34950425 34950425 G T DNAJC21 Missense_Mutation p.D491Y 0.20 deleterious(0.01) probably_damaging(0.959) TCGA-NK-A5CX-01 5 40999866 40999866 C A MROH2B Nonsense_Mutation p.E1500* 0.25 TCGA-NK-A5CX-01 5 40999867 40999867 C A MROH2B Missense_Mutation p.Q1499H 0.25 tolerated(0.14) possibly_damaging(0.769) TCGA-NK-A5CX-01 5 41058242 41058242 G A MROH2B Missense_Mutation p.R227C 0.42 tolerated(0.17) benign(0) TCGA-NK-A5CX-01 5 41065544 41065544 C A MROH2B Missense_Mutation p.A84S 0.12 tolerated(0.17) possibly_damaging(0.692) TCGA-NK-A5CX-01 5 45262384 45262384 G A HCN1 Missense_Mutation p.T771M 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.551) TCGA-NK-A5CX-01 5 67591145 67591154 TACTTGATGT - PIK3R1 Splice_Site p.X580_splice 0.17 TCGA-NK-A5CX-01 6 122737417 122737417 A T HSF2 Silent p.A169A 0.51 TCGA-NK-A5CX-01 6 134498807 134498807 A G SGK1 Intron 0.45 TCGA-NK-A5CX-01 6 144757105 144757105 G T UTRN Missense_Mutation p.R297L 0.31 tolerated(0.09) benign(0.328) TCGA-NK-A5CX-01 6 151939127 151939127 G C CCDC170 Missense_Mutation p.V665L 0.29 tolerated(0.2) benign(0.034) TCGA-NK-A5CX-01 6 26250831 26250831 C T HIST1H3F Translation_Start_Site p.M1? 0.17 deleterious_low_confidence(0.01) benign(0.38) TCGA-NK-A5CX-01 6 50791266 50791266 G A TFAP2B Silent p.P76P 0.33 TCGA-NK-A5CX-01 6 69646524 69646524 G T BAI3 Missense_Mutation p.G328C 0.33 deleterious(0) probably_damaging(0.932) TCGA-NK-A5CX-01 7 100681240 100681240 T C MUC17 Silent p.L2181L 0.13 TCGA-NK-A5CX-01 7 107707016 107707016 C - LAMB4 Frame_Shift_Del p.D826Tfs*7 0.21 TCGA-NK-A5CX-01 7 117282645 117282645 C T CFTR Nonsense_Mutation p.Q1291* 0.13 TCGA-NK-A5CX-01 7 122033299 122033299 T A CADPS2 Missense_Mutation p.I987F 0.22 tolerated(0.14) benign(0.003) TCGA-NK-A5CX-01 7 154684403 154684403 C T DPP6 3'UTR 0.11 TCGA-NK-A5CX-01 7 30868321 30868321 A G FAM188B Missense_Mutation p.K367R 0.23 tolerated(0.15) benign(0.071) TCGA-NK-A5CX-01 7 44556805 44556805 C A NPC1L1 Splice_Site p.X1123_splice 0.12 TCGA-NK-A5CX-01 7 45699644 45699644 G T ADCY1 Missense_Mutation p.K437N 0.10 deleterious(0.01) possibly_damaging(0.772) TCGA-NK-A5CX-01 7 4876155 4876155 G C RADIL Missense_Mutation p.S206C 0.30 tolerated(0.13) possibly_damaging(0.765) TCGA-NK-A5CX-01 7 4899905 4899905 C A PAPOLB Missense_Mutation p.G512C 0.11 deleterious(0.02) possibly_damaging(0.853) TCGA-NK-A5CX-01 7 73604031 73604031 G T EIF4H Silent p.V92V 0.08 TCGA-NK-A5CX-01 7 81346589 81346589 C A HGF Missense_Mutation p.G455V 0.10 tolerated(0.09) possibly_damaging(0.821) TCGA-NK-A5CX-01 8 110416849 110416849 G C PKHD1L1 Missense_Mutation p.Q480H 0.36 tolerated(0.18) possibly_damaging(0.854) TCGA-NK-A5CX-01 8 110476888 110476888 C A PKHD1L1 Silent p.G2609G 0.11 TCGA-NK-A5CX-01 8 11189437 11189437 C A SLC35G5 Silent p.V274V 0.04 TCGA-NK-A5CX-01 8 120569880 120569880 C G ENPP2 Missense_Mutation p.A877P 0.23 deleterious(0) probably_damaging(0.988) TCGA-NK-A5CX-01 8 139380192 139380192 A G FAM135B Missense_Mutation p.V12A 0.09 deleterious(0) benign(0.427) TCGA-NK-A5CX-01 8 145738710 145738710 G A RECQL4 Missense_Mutation p.A785V 0.20 deleterious(0) probably_damaging(0.916) TCGA-NK-A5CX-01 8 2806905 2806905 A T CSMD1 Missense_Mutation p.S3440T 0.12 benign(0.014) TCGA-NK-A5CX-01 8 39691465 39691465 T C ADAM2 Silent p.Q62Q 0.25 TCGA-NK-A5CX-01 8 52359720 52359720 C G PXDNL Missense_Mutation p.G457R 0.33 tolerated(0.42) benign(0.049) TCGA-NK-A5CX-01 8 87683214 87683214 C A CNGB3 Missense_Mutation p.V151L 0.34 tolerated(0.08) benign(0.016) TCGA-NK-A5CX-01 9 107331684 107331684 C A OR13C8 Missense_Mutation p.P79Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-NK-A5CX-01 9 107331689 107331689 A T OR13C8 Missense_Mutation p.I81F 0.25 tolerated(0.09) benign(0.391) TCGA-NK-A5CX-01 X 102192578 102192578 A T RAB40AL Missense_Mutation p.K111M 0.33 deleterious(0) possibly_damaging(0.793) TCGA-NK-A5CX-01 X 120183303 120183303 T A GLUD2 3'UTR 0.33 TCGA-NK-A5CX-01 X 128873184 128873184 G T XPNPEP2 5'UTR 0.37 TCGA-NK-A5CX-01 X 140969462 140969462 T C MAGEC3 Silent p.S263S 0.31 TCGA-NK-A5CX-01 X 140994902 140994902 G T MAGEC1 Missense_Mutation p.G571V 0.32 tolerated_low_confidence(0.29) probably_damaging(0.953) TCGA-NK-A5CX-01 X 155233490 155233490 G A IL9R Missense_Mutation p.V135M 0.09 deleterious(0) possibly_damaging(0.888) TCGA-NK-A5CX-01 X 1585371 1585371 G - P2RY8 Frame_Shift_Del p.V28Wfs*35 0.18 TCGA-NK-A5CX-01 X 48674876 48674876 G A HDAC6 Missense_Mutation p.E543K 0.25 tolerated(0.05) possibly_damaging(0.474) TCGA-NK-A5CX-01 X 49957192 49957192 C A AKAP4 Missense_Mutation p.L724F 0.43 deleterious(0.02) probably_damaging(0.992) TCGA-NK-A5CX-01 X 50377935 50377935 C G SHROOM4 Missense_Mutation p.D380H 0.47 deleterious(0.01) benign(0.008) TCGA-NK-A5CX-01 X 54783700 54783700 G T ITIH6 Missense_Mutation p.P936H 0.35 tolerated(0.11) probably_damaging(0.927) TCGA-NK-A5CX-01 X 77245453 77245453 A T ATP7A Silent p.S445S 0.30 TCGA-NK-A5CX-01 Y 6948778 6948778 G T TBL1Y Missense_Mutation p.A321S 0.24 deleterious(0) possibly_damaging(0.872) TCGA-NK-A5D1-01 10 107022211 107022211 A G SORCS3 Missense_Mutation p.E1189G 0.38 tolerated(0.17) benign(0.008) TCGA-NK-A5D1-01 10 107022212 107022212 G T SORCS3 Missense_Mutation p.E1189D 0.38 tolerated(0.13) benign(0.008) TCGA-NK-A5D1-01 10 121590926 121590926 T A MCMBP 3'UTR 0.24 TCGA-NK-A5D1-01 10 126655327 126655327 A G ZRANB1 Missense_Mutation p.M327V 0.40 deleterious(0.01) benign(0.024) TCGA-NK-A5D1-01 10 27403455 27403455 G T YME1L1 Missense_Mutation p.L725I 0.54 deleterious(0.02) possibly_damaging(0.467) TCGA-NK-A5D1-01 10 93753503 93753503 C T BTAF1 Missense_Mutation p.T1033I 0.12 deleterious(0.04) benign(0.37) TCGA-NK-A5D1-01 10 97096647 97096647 A G SORBS1 Silent p.D1090D 0.32 TCGA-NK-A5D1-01 11 124440693 124440693 C T OR8A1 Silent p.G243G 0.74 TCGA-NK-A5D1-01 11 128680832 128680832 C G FLI1 Silent p.V436V 0.83 TCGA-NK-A5D1-01 11 5530002 5530002 C G UBQLN3 Missense_Mutation p.D263H 0.26 deleterious(0.01) benign(0.079) TCGA-NK-A5D1-01 11 55594932 55594932 A G OR5L2 Missense_Mutation p.K80E 0.49 deleterious(0.01) possibly_damaging(0.706) TCGA-NK-A5D1-01 11 62571433 62571433 C T NXF1 Missense_Mutation p.V16I 0.11 tolerated(0.17) benign(0.079) TCGA-NK-A5D1-01 11 65268757 65268757 A T MALAT1 RNA 0.48 TCGA-NK-A5D1-01 12 102053516 102053516 G T MYBPC1 Missense_Mutation p.D587Y 0.44 deleterious(0) probably_damaging(1) TCGA-NK-A5D1-01 12 102547688 102547688 A G PARPBP Silent p.V143V 0.11 TCGA-NK-A5D1-01 12 102547690 102547690 G T PARPBP Missense_Mutation p.G144V 0.11 tolerated(0.2) benign(0.047) TCGA-NK-A5D1-01 12 105538200 105538200 A G KIAA1033 Missense_Mutation p.I716V 0.46 tolerated(0.2) benign(0.009) TCGA-NK-A5D1-01 12 113328678 113328678 G A RPH3A Missense_Mutation p.E549K 0.29 deleterious(0.01) probably_damaging(0.928) TCGA-NK-A5D1-01 12 23716289 23716289 C G SOX5 Missense_Mutation p.R464P 0.18 deleterious(0) probably_damaging(0.998) TCGA-NK-A5D1-01 12 23818436 23818436 A T SOX5 Silent p.A291A 0.42 TCGA-NK-A5D1-01 12 80730225 80730225 A G OTOGL Missense_Mutation p.I1536V 0.46 tolerated(0.71) benign(0.015) TCGA-NK-A5D1-01 12 88522784 88522784 G A CEP290 Missense_Mutation p.S294L 0.50 benign(0.009) TCGA-NK-A5D1-01 14 105410616 105410616 C A AHNAK2 Silent p.V3724V 0.46 TCGA-NK-A5D1-01 14 24841776 24841776 C G NFATC4 Silent p.V505V 0.40 TCGA-NK-A5D1-01 14 88789115 88789115 T A KCNK10 Nonsense_Mutation p.K10* 0.55 TCGA-NK-A5D1-01 14 94044211 94044211 C T UNC79 Silent p.G568G 0.38 TCGA-NK-A5D1-01 15 25226952 25226952 G C SNRPN 3'Flank 0.47 TCGA-NK-A5D1-01 15 30053417 30053417 C T TJP1 Missense_Mutation p.R312Q 0.13 tolerated(0.17) benign(0.009) TCGA-NK-A5D1-01 15 62209777 62209777 G A VPS13C Silent p.T2606T 0.34 TCGA-NK-A5D1-01 15 69732333 69732333 C T KIF23 Nonsense_Mutation p.R602* 0.67 TCGA-NK-A5D1-01 15 75980646 75980646 G C CSPG4 Missense_Mutation p.D920E 0.46 tolerated(0.23) benign(0.007) TCGA-NK-A5D1-01 15 89871973 89871973 C T POLG Silent p.K371K 0.14 TCGA-NK-A5D1-01 15 90185484 90185484 G A KIF7 Missense_Mutation p.R782W 0.29 deleterious(0) possibly_damaging(0.656) TCGA-NK-A5D1-01 16 1248740 1248740 C T CACNA1H Missense_Mutation p.R257W 0.40 deleterious(0) probably_damaging(0.999) TCGA-NK-A5D1-01 16 20576108 20576108 G A ACSM2B Silent p.S20S 0.13 TCGA-NK-A5D1-01 16 24802730 24802730 G C TNRC6A Missense_Mutation p.G923R 0.15 deleterious(0) probably_damaging(0.939) TCGA-NK-A5D1-01 16 57416859 57416859 G A CX3CL1 Missense_Mutation p.R370Q 0.07 deleterious(0) possibly_damaging(0.853) TCGA-NK-A5D1-01 16 68156411 68156411 C T NFATC3 Silent p.L209L 0.37 TCGA-NK-A5D1-01 16 68591987 68591987 G A ZFP90 Silent p.R40R 0.45 TCGA-NK-A5D1-01 16 68713872 68713872 C T CDH3 Missense_Mutation p.R288W 0.27 deleterious(0) probably_damaging(0.999) TCGA-NK-A5D1-01 16 71674629 71674629 C T MARVELD3 Missense_Mutation p.A311V 0.40 deleterious(0.01) probably_damaging(0.988) TCGA-NK-A5D1-01 17 26696797 26696797 G T VTN Missense_Mutation p.A87D 0.16 tolerated(0.43) benign(0.071) TCGA-NK-A5D1-01 17 34797642 34797642 A T TBC1D3G Silent p.P498P 0.34 TCGA-NK-A5D1-01 17 57760111 57760111 T C CLTC Missense_Mutation p.V1241A 0.33 deleterious(0) possibly_damaging(0.702) TCGA-NK-A5D1-01 17 7578461 7578461 C A TP53 Missense_Mutation p.V157F 0.91 deleterious(0) probably_damaging(0.997) TCGA-NK-A5D1-01 18 61645702 61645702 A T SERPINB8 Missense_Mutation p.M54L 0.54 tolerated(0.17) possibly_damaging(0.517) TCGA-NK-A5D1-01 18 66564471 66564471 G A CCDC102B Missense_Mutation p.A357T 0.44 tolerated(0.22) possibly_damaging(0.713) TCGA-NK-A5D1-01 19 1004670 1004670 G A GRIN3B Silent p.R390R 0.67 TCGA-NK-A5D1-01 19 1004854 1004854 G T GRIN3B Missense_Mutation p.D452Y 0.80 deleterious(0) possibly_damaging(0.821) TCGA-NK-A5D1-01 19 1005016 1005016 G A GRIN3B Missense_Mutation p.G506S 0.80 deleterious(0) probably_damaging(0.998) TCGA-NK-A5D1-01 19 1005035 1005035 G T GRIN3B Missense_Mutation p.R512L 0.82 deleterious(0.03) benign(0.37) TCGA-NK-A5D1-01 19 1005286 1005286 G A GRIN3B Missense_Mutation p.E596K 0.79 deleterious(0) probably_damaging(1) TCGA-NK-A5D1-01 19 1005293 1005293 G T GRIN3B Missense_Mutation p.R598L 0.78 tolerated(0.13) benign(0.078) TCGA-NK-A5D1-01 19 22272095 22272095 T A ZNF257 Missense_Mutation p.Y515N 0.58 deleterious(0) probably_damaging(0.985) TCGA-NK-A5D1-01 19 42473038 42473038 G C ATP1A3 Missense_Mutation p.F919L 0.72 tolerated(0.06) benign(0.019) TCGA-NK-A5D1-01 19 55450973 55450973 C - NLRP7 Frame_Shift_Del p.G405Afs*11 0.22 TCGA-NK-A5D1-01 19 6707494 6707494 T A C3 Missense_Mutation p.E677V 0.24 tolerated(0.05) benign(0.244) TCGA-NK-A5D1-01 1 114308633 114308633 T C RSBN1 Missense_Mutation p.N793S 0.42 tolerated_low_confidence(0.09) benign(0) TCGA-NK-A5D1-01 1 120506283 120506283 T A NOTCH2 Missense_Mutation p.E610V 0.44 deleterious(0) possibly_damaging(0.552) TCGA-NK-A5D1-01 1 150931734 150931734 G T SETDB1 Missense_Mutation p.R804L 0.45 deleterious(0) probably_damaging(0.998) TCGA-NK-A5D1-01 1 155785643 155785643 C T GON4L Missense_Mutation p.E372K 0.44 deleterious(0) possibly_damaging(0.486) TCGA-NK-A5D1-01 1 156100434 156100434 T A LMNA Missense_Mutation p.I128K 0.10 tolerated(0.86) benign(0.003) TCGA-NK-A5D1-01 1 156618411 156618411 G A BCAN Missense_Mutation p.R274Q 0.38 tolerated(0.53) benign(0.029) TCGA-NK-A5D1-01 1 167097185 167097185 C T DUSP27 Silent p.L939L 0.38 TCGA-NK-A5D1-01 1 167097463 167097463 C T DUSP27 Missense_Mutation p.S1032F 0.38 deleterious(0.01) probably_damaging(0.99) TCGA-NK-A5D1-01 1 175372328 175372328 C A TNR Missense_Mutation p.E308D 0.41 tolerated(0.47) benign(0.04) TCGA-NK-A5D1-01 1 178412007 178412007 C T RASAL2 Silent p.I375I 0.46 TCGA-NK-A5D1-01 1 200960261 200960261 C T KIF21B Missense_Mutation p.R824H 0.31 deleterious(0) possibly_damaging(0.726) TCGA-NK-A5D1-01 1 207785302 207785302 T A CR1 Missense_Mutation p.F2164Y 0.09 tolerated(0.18) possibly_damaging(0.785) TCGA-NK-A5D1-01 1 207785303 207785303 C T CR1 Silent p.F2164F 0.09 TCGA-NK-A5D1-01 1 247768999 247768999 A G OR2G3 Missense_Mutation p.T38A 0.14 deleterious(0.05) benign(0.033) TCGA-NK-A5D1-01 1 39751296 39751296 A T MACF1 Silent p.S463S 0.35 TCGA-NK-A5D1-01 1 45244061 45244061 G T RPS8 Intron 0.45 TCGA-NK-A5D1-01 1 47904332 47904332 C G FOXD2 Missense_Mutation p.I175M 0.25 deleterious(0) probably_damaging(1) TCGA-NK-A5D1-01 1 87033265 87033265 C A CLCA4 Silent p.L371L 0.49 TCGA-NK-A5D1-01 1 9117630 9117630 C T SLC2A5 Missense_Mutation p.R57K 0.12 deleterious(0) probably_damaging(0.999) TCGA-NK-A5D1-01 20 10541435 10541435 G A SLX4IP Missense_Mutation p.E69K 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-NK-A5D1-01 20 44452699 44452699 T C TNNC2 Missense_Mutation p.T128A 0.10 deleterious(0.01) benign(0.001) TCGA-NK-A5D1-01 20 57429205 57429205 C A GNAS Missense_Mutation p.F295L 0.42 tolerated_low_confidence(0.05) unknown(0) TCGA-NK-A5D1-01 21 37763899 37763899 A G CHAF1B Missense_Mutation p.I104V 0.85 tolerated(0.6) benign(0.002) TCGA-NK-A5D1-01 21 47686940 47686940 C G MCM3AP Missense_Mutation p.E915D 0.58 deleterious(0.04) benign(0.016) TCGA-NK-A5D1-01 2 100058910 100058910 G A REV1 Silent p.L124L 0.33 TCGA-NK-A5D1-01 2 100209870 100209870 G A AFF3 Silent p.N776N 0.18 TCGA-NK-A5D1-01 2 135095914 135095914 C T MGAT5 Nonsense_Mutation p.R244* 0.47 TCGA-NK-A5D1-01 2 163228527 163228527 C G KCNH7 Missense_Mutation p.A1135P 0.23 tolerated_low_confidence(0.12) benign(0.327) TCGA-NK-A5D1-01 2 168115795 168115795 C T XIRP2 3'UTR 0.36 TCGA-NK-A5D1-01 2 183993140 183993140 G T NUP35 Missense_Mutation p.G56C 0.36 deleterious(0.05) possibly_damaging(0.707) TCGA-NK-A5D1-01 2 196852813 196852813 G T DNAH7 Missense_Mutation p.D498E 0.44 tolerated(1) benign(0) TCGA-NK-A5D1-01 2 207988543 207988543 A C KLF7 Missense_Mutation p.Y230D 0.37 deleterious(0) probably_damaging(0.997) TCGA-NK-A5D1-01 2 219900365 219900365 G C CCDC108 Missense_Mutation p.Q127E 0.55 tolerated_low_confidence(0.07) benign(0.108) TCGA-NK-A5D1-01 2 220369953 220369953 G A GMPPA Silent p.E208E 0.10 TCGA-NK-A5D1-01 2 226447131 226447131 G T NYAP2 Missense_Mutation p.R333I 0.48 deleterious(0) probably_damaging(0.999) TCGA-NK-A5D1-01 2 50280514 50280514 A C NRXN1 Silent p.T1381T 0.18 TCGA-NK-A5D1-01 2 73868797 73868797 G T NAT8 5'UTR 0.57 TCGA-NK-A5D1-01 2 74688472 74688472 C G MOGS Missense_Mutation p.R815P 0.44 deleterious(0.01) possibly_damaging(0.665) TCGA-NK-A5D1-01 2 89986846 89986846 T G IGKV2D-29 Missense_Mutation p.C43G 0.40 deleterious(0) probably_damaging(1) TCGA-NK-A5D1-01 3 108224674 108224674 T A MYH15 Nonsense_Mutation p.K51* 0.37 TCGA-NK-A5D1-01 3 113128063 113128063 T A WDR52 Missense_Mutation p.K260N 0.15 deleterious(0.01) benign(0.305) TCGA-NK-A5D1-01 3 130287364 130287364 G A COL6A6 Missense_Mutation p.E773K 0.59 tolerated(0.1) benign(0.374) TCGA-NK-A5D1-01 3 15520888 15520888 C A COLQ Missense_Mutation p.G108V 0.77 deleterious(0.03) unknown(0) TCGA-NK-A5D1-01 3 160155897 160155897 T C TRIM59 Missense_Mutation p.I359V 0.55 tolerated(0.86) benign(0) TCGA-NK-A5D1-01 3 164906812 164906812 G A SLITRK3 Missense_Mutation p.R603C 0.18 deleterious(0) probably_damaging(0.973) TCGA-NK-A5D1-01 3 184070120 184070120 C G CLCN2 Splice_Site p.X758_splice 0.27 TCGA-NK-A5D1-01 3 184910979 184910979 C A EHHADH Nonsense_Mutation p.E403* 0.25 TCGA-NK-A5D1-01 3 195538632 195538632 G C MUC4 Silent p.L19L 0.08 TCGA-NK-A5D1-01 3 391176 391176 C T CHL1 Missense_Mutation p.A328V 0.83 deleterious(0) probably_damaging(0.999) TCGA-NK-A5D1-01 3 44827901 44827901 G A KIF15 Silent p.K158K 0.74 TCGA-NK-A5D1-01 3 49457652 49457652 G T AMT Missense_Mutation p.L155I 0.09 tolerated(0.42) benign(0.045) TCGA-NK-A5D1-01 3 49693241 49693241 G - BSN Frame_Shift_Del p.A2085Pfs*109 0.40 TCGA-NK-A5D1-01 4 149356747 149356747 T C NR3C2 Silent p.S422S 0.32 TCGA-NK-A5D1-01 4 173942679 173942679 C A GALNTL6 Missense_Mutation p.T514N 0.15 tolerated(0.51) possibly_damaging(0.813) TCGA-NK-A5D1-01 4 185033851 185033851 C A ENPP6 Missense_Mutation p.A323S 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-NK-A5D1-01 4 5981947 5981947 G A C4orf50 Missense_Mutation p.A515V 0.48 tolerated(0.13) benign(0.104) TCGA-NK-A5D1-01 5 112178644 112178644 C G APC Silent p.T2451T 0.09 TCGA-NK-A5D1-01 5 121187684 121187684 C A FTMT Missense_Mutation p.S9Y 0.52 deleterious_low_confidence(0.01) possibly_damaging(0.564) TCGA-NK-A5D1-01 5 140175767 140175767 G C PCDHA2 Silent p.S406S 0.27 TCGA-NK-A5D1-01 5 140208860 140208860 T C PCDHA6 Missense_Mutation p.F395S 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-NK-A5D1-01 5 140735111 140735111 A T PCDHGA4 Missense_Mutation p.K115M 0.59 deleterious_low_confidence(0) possibly_damaging(0.873) TCGA-NK-A5D1-01 5 22078849 22078849 C G CDH12 5'UTR 0.41 TCGA-NK-A5D1-01 5 43388544 43388544 C T CCL28 Silent p.E33E 0.20 TCGA-NK-A5D1-01 5 44809188 44809188 G T MRPS30 Missense_Mutation p.A42S 1.00 tolerated(0.28) benign(0.197) TCGA-NK-A5D1-01 5 64920024 64920024 C G TRIM23 Silent p.V26V 0.36 TCGA-NK-A5D1-01 5 90083938 90083938 G A GPR98 Silent p.Q4568Q 0.25 TCGA-NK-A5D1-01 6 112021321 112021321 C T FYN Missense_Mutation p.G283E 0.12 deleterious(0) possibly_damaging(0.458) TCGA-NK-A5D1-01 6 133044912 133044912 A T VNN3 3'UTR 0.31 TCGA-NK-A5D1-01 6 146755255 146755255 C T GRM1 Missense_Mutation p.P970S 0.36 tolerated_low_confidence(0.12) benign(0.004) TCGA-NK-A5D1-01 6 151140844 151140844 G A PLEKHG1 Missense_Mutation p.G448R 0.13 tolerated(0.18) benign(0.217) TCGA-NK-A5D1-01 6 157521964 157521964 G A ARID1B Silent p.S1412S 0.37 TCGA-NK-A5D1-01 6 17649415 17649415 C A NUP153 Silent p.S504S 0.32 TCGA-NK-A5D1-01 6 17649505 17649505 T A NUP153 Missense_Mutation p.K474N 0.60 tolerated(0.18) benign(0.03) TCGA-NK-A5D1-01 6 27222621 27222621 C A PRSS16 Missense_Mutation p.P434T 0.53 deleterious(0.01) benign(0.103) TCGA-NK-A5D1-01 6 28227941 28227941 C T NKAPL Silent p.T264T 0.53 TCGA-NK-A5D1-01 6 30688224 30688224 A T TUBB 5'UTR 0.15 TCGA-NK-A5D1-01 6 31778534 31778534 C T HSPA1L Missense_Mutation p.E406K 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-NK-A5D1-01 6 39304311 39304311 A G KIF6 Silent p.N814N 0.45 TCGA-NK-A5D1-01 6 44217210 44217210 C T HSP90AB1 Missense_Mutation p.R82C 0.24 deleterious(0.03) possibly_damaging(0.892) TCGA-NK-A5D1-01 6 74073482 74073482 G T KHDC3L Missense_Mutation p.A185S 0.10 tolerated(0.16) possibly_damaging(0.883) TCGA-NK-A5D1-01 6 76380392 76380392 A G SENP6 Missense_Mutation p.I450V 0.43 tolerated(0.57) probably_damaging(0.946) TCGA-NK-A5D1-01 6 83898338 83898338 A G PGM3 Silent p.D156D 0.41 TCGA-NK-A5D1-01 7 107211611 107211611 A G DUS4L Silent p.V46V 0.40 TCGA-NK-A5D1-01 7 123302841 123302841 C G LMOD2 Missense_Mutation p.P401A 0.48 deleterious(0.01) probably_damaging(0.997) TCGA-NK-A5D1-01 7 126544145 126544145 C T GRM8 Missense_Mutation p.S300N 0.41 deleterious(0.01) benign(0.038) TCGA-NK-A5D1-01 7 138601948 138601948 C G KIAA1549 Silent p.L808L 0.41 TCGA-NK-A5D1-01 7 142168549 142168549 C G TRBV5-4 Silent p.L58L 0.32 TCGA-NK-A5D1-01 7 148809353 148809353 C T ZNF425 Nonsense_Mutation p.W60* 0.42 TCGA-NK-A5D1-01 8 104897634 104897634 T A RIMS2 Silent p.S269S 0.46 TCGA-NK-A5D1-01 8 108348380 108348380 G A ANGPT1 Silent p.N191N 0.44 TCGA-NK-A5D1-01 8 12589250 12589250 G C LONRF1 Silent p.L561L 0.29 TCGA-NK-A5D1-01 8 143822544 143822544 G T SLURP1 3'UTR 0.34 TCGA-NK-A5D1-01 8 19822849 19822849 C A LPL 3'UTR 0.34 TCGA-NK-A5D1-01 8 24775989 24775989 C A NEFM Missense_Mutation p.T874N 0.47 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-NK-A5D1-01 8 27679922 27679923 TT A PBK Frame_Shift_Del p.L126Ffs*2 0.34 TCGA-NK-A5D1-01 8 68968149 68968149 G A PREX2 Missense_Mutation p.G393E 0.47 tolerated(1) probably_damaging(1) TCGA-NK-A5D1-01 8 92365222 92365222 T C SLC26A7 Missense_Mutation p.W438R 0.38 deleterious(0) probably_damaging(1) TCGA-NK-A5D1-01 9 107331906 107331906 T C OR13C8 Missense_Mutation p.L153P 0.86 tolerated(0.2) possibly_damaging(0.748) TCGA-NK-A5D1-01 9 107591297 107591297 C T ABCA1 Missense_Mutation p.R672Q 0.93 deleterious(0.03) probably_damaging(0.995) TCGA-NK-A5D1-01 9 123476288 123476288 G A MEGF9 Nonsense_Mutation p.Q117* 0.50 TCGA-NK-A5D1-01 9 3937164 3937164 G T GLIS3 Nonsense_Mutation p.S579* 0.70 TCGA-NK-A5D1-01 9 87563461 87563461 G A NTRK2 Missense_Mutation p.V617I 0.17 deleterious(0.02) benign(0.339) TCGA-NK-A5D1-01 X 153136411 153136411 G A L1CAM Silent p.I176I 0.90 TCGA-NK-A5D1-01 X 67938034 67938034 A T STARD8 Silent p.S426S 0.28 TCGA-NK-A5D1-01 X 79286278 79286278 C T TBX22 Missense_Mutation p.P411S 0.86 tolerated(0.1) benign(0.295) TCGA-NK-A5D1-01 X 84558425 84558425 T C POF1B Missense_Mutation p.I546V 0.90 tolerated(0.19) possibly_damaging(0.752) TCGA-NK-A7XE-01 10 16932483 16932483 G T CUBN Missense_Mutation p.T2881N 0.20 deleterious(0.01) possibly_damaging(0.864) TCGA-NK-A7XE-01 10 18690026 18690026 C T CACNB2 Intron 0.21 TCGA-NK-A7XE-01 10 29769476 29769476 C T SVIL Silent p.V1789V 0.26 TCGA-NK-A7XE-01 10 29770619 29770619 C T SVIL Missense_Mutation p.R1665K 0.21 tolerated(0.08) possibly_damaging(0.477) TCGA-NK-A7XE-01 10 29773736 29773736 C T SVIL Missense_Mutation p.E1602K 0.08 deleterious(0) probably_damaging(0.999) TCGA-NK-A7XE-01 10 30317180 30317180 C G KIAA1462 Missense_Mutation p.E633Q 0.24 deleterious(0) probably_damaging(1) TCGA-NK-A7XE-01 10 53458097 53458097 G A CSTF2T Silent p.L405L 0.21 TCGA-NK-A7XE-01 10 54032233 54032233 C G PRKG1 Silent p.L465L 0.24 TCGA-NK-A7XE-01 10 79572015 79572015 G A DLG5 Silent p.I1382I 0.24 TCGA-NK-A7XE-01 11 111594776 111594776 G C SIK2 Missense_Mutation p.E902Q 0.27 deleterious_low_confidence(0.03) benign(0.253) TCGA-NK-A7XE-01 11 111594786 111594786 G A SIK2 Missense_Mutation p.G905E 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.894) TCGA-NK-A7XE-01 11 119509465 119509465 G C RP11-196E1.3 Intron 0.44 TCGA-NK-A7XE-01 11 40136993 40136993 G A LRRC4C Missense_Mutation p.H284Y 0.22 tolerated(0.16) possibly_damaging(0.626) TCGA-NK-A7XE-01 11 48346580 48346580 A G OR4C3 Missense_Mutation p.I30V 0.27 tolerated(0.57) benign(0.002) TCGA-NK-A7XE-01 11 56114433 56114433 C T OR8K1 Silent p.L307L 0.25 TCGA-NK-A7XE-01 11 62286412 62286412 C T AHNAK Silent p.L5159L 0.35 TCGA-NK-A7XE-01 11 62292000 62292000 C G AHNAK Missense_Mutation p.E3297Q 0.28 benign(0.068) TCGA-NK-A7XE-01 12 104515054 104515054 C G NFYB Missense_Mutation p.D159H 0.29 deleterious(0) possibly_damaging(0.541) TCGA-NK-A7XE-01 12 49373437 49373437 C G WNT1 Missense_Mutation p.F97L 0.41 deleterious(0.03) benign(0.167) TCGA-NK-A7XE-01 12 57859481 57859481 T A GLI1 Splice_Site p.X208_splice 0.32 TCGA-NK-A7XE-01 12 64746801 64746801 A T C12orf56 Missense_Mutation p.D96E 0.29 tolerated(0.34) benign(0.002) TCGA-NK-A7XE-01 12 92818799 92818799 C G CLLU1 Missense_Mutation p.Q115E 0.20 benign(0.095) TCGA-NK-A7XE-01 13 110833688 110833688 C T COL4A1 Missense_Mutation p.R715H 0.43 possibly_damaging(0.45) TCGA-NK-A7XE-01 13 114757982 114757982 T A RASA3 Missense_Mutation p.S742C 0.43 tolerated(0.05) benign(0.006) TCGA-NK-A7XE-01 13 25479913 25479913 C T CENPJ Missense_Mutation p.D755N 0.24 tolerated(0.1) possibly_damaging(0.46) TCGA-NK-A7XE-01 13 39266075 39266075 A G FREM2 Missense_Mutation p.K1532E 0.32 deleterious(0.01) benign(0.118) TCGA-NK-A7XE-01 13 53277688 53277688 C T LECT1 3'UTR 0.27 TCGA-NK-A7XE-01 14 103404645 103404645 G C CDC42BPB Nonsense_Mutation p.S1644* 0.30 TCGA-NK-A7XE-01 14 58771659 58771659 C T ARID4A Intron 0.38 TCGA-NK-A7XE-01 15 22382811 22382811 A G OR4N4 Silent p.L113L 0.12 TCGA-NK-A7XE-01 15 43527883 43527883 G A TGM5 Nonsense_Mutation p.R500* 0.24 TCGA-NK-A7XE-01 15 45654257 45654257 T C GATM 3'UTR 0.44 TCGA-NK-A7XE-01 15 49659743 49659743 A G FAM227B Silent p.S391S 0.28 TCGA-NK-A7XE-01 15 54860091 54860091 A G UNC13C Missense_Mutation p.T2018A 0.40 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-NK-A7XE-01 15 62315708 62315708 C T VPS13C Missense_Mutation p.E176K 0.18 tolerated(0.07) benign(0.027) TCGA-NK-A7XE-01 15 63988456 63988456 C G HERC1 Missense_Mutation p.R1663T 0.20 benign(0.001) TCGA-NK-A7XE-01 15 65968900 65968900 C T DENND4A Missense_Mutation p.E1417K 0.35 tolerated(0.44) benign(0.269) TCGA-NK-A7XE-01 15 84694025 84694025 C G ADAMTSL3 Missense_Mutation p.S1498C 0.29 deleterious(0) possibly_damaging(0.841) TCGA-NK-A7XE-01 15 84694159 84694159 C T ADAMTSL3 Missense_Mutation p.P1543S 0.24 tolerated(0.88) benign(0.038) TCGA-NK-A7XE-01 16 2522000 2522000 C T NTN3 Missense_Mutation p.R100W 0.43 deleterious(0) possibly_damaging(0.817) TCGA-NK-A7XE-01 16 30581225 30581225 C A ZNF688 3'UTR 0.30 TCGA-NK-A7XE-01 16 46615649 46615649 G C SHCBP1 Missense_Mutation p.L671V 0.37 tolerated(0.07) possibly_damaging(0.546) TCGA-NK-A7XE-01 16 67235948 67235950 CTT - ELMO3 In_Frame_Del p.F427del 0.33 TCGA-NK-A7XE-01 16 67401321 67401321 C T LRRC36 Missense_Mutation p.P386S 0.28 tolerated_low_confidence(0.31) benign(0.012) TCGA-NK-A7XE-01 17 1715297 1715297 C G SMYD4 Missense_Mutation p.D83H 0.39 deleterious(0.03) probably_damaging(0.934) TCGA-NK-A7XE-01 17 31348259 31348259 C T ASIC2 Silent p.A473A 0.17 TCGA-NK-A7XE-01 17 33749567 33749567 C T SLFN12 Missense_Mutation p.E161K 0.24 tolerated(1) benign(0.001) TCGA-NK-A7XE-01 17 3628817 3628817 G C GSG2 Missense_Mutation p.E530Q 0.39 tolerated(0.09) benign(0.112) TCGA-NK-A7XE-01 17 37359337 37359337 G A RPL19 Missense_Mutation p.E111K 0.54 deleterious(0.03) benign(0.41) TCGA-NK-A7XE-01 17 37650779 37650779 G A CDK12 Missense_Mutation p.E751K 0.13 probably_damaging(0.998) TCGA-NK-A7XE-01 17 39645783 39645783 G C KRT36 Missense_Mutation p.R112G 0.45 deleterious(0) possibly_damaging(0.83) TCGA-NK-A7XE-01 17 56438152 56438152 C T RNF43 Missense_Mutation p.E281K 0.15 deleterious(0) possibly_damaging(0.734) TCGA-NK-A7XE-01 17 56679300 56679300 C G TEX14 Missense_Mutation p.Q521H 0.31 deleterious(0.02) probably_damaging(0.99) TCGA-NK-A7XE-01 17 7579591 7579591 C T TP53 Splice_Site p.X33_splice 0.33 TCGA-NK-A7XE-01 17 7611312 7611312 G A EFNB3 Silent p.Q53Q 0.49 TCGA-NK-A7XE-01 18 21109631 21109631 G C C18orf8 Silent p.L483L 0.94 TCGA-NK-A7XE-01 19 47861254 47861254 C G DHX34 Silent p.V383V 0.16 TCGA-NK-A7XE-01 19 51411704 51411704 C T KLK4 Missense_Mutation p.E175K 0.22 tolerated(0.13) possibly_damaging(0.518) TCGA-NK-A7XE-01 19 54745669 54745669 C T LILRA6 Silent p.Q147Q 0.59 TCGA-NK-A7XE-01 19 58018236 58018236 G T ZNF773 Missense_Mutation p.R258L 0.25 tolerated(0.1) possibly_damaging(0.717) TCGA-NK-A7XE-01 1 152282923 152282923 G C FLG Nonsense_Mutation p.S1480* 0.19 TCGA-NK-A7XE-01 1 155742907 155742907 C T GON4L Silent p.L815L 0.34 TCGA-NK-A7XE-01 1 155891303 155891303 G A KIAA0907 Missense_Mutation p.P377S 0.40 tolerated(0.13) benign(0.071) TCGA-NK-A7XE-01 1 163044434 163044434 C G RGS4 3'UTR 0.30 TCGA-NK-A7XE-01 1 1654043 1654043 T C CDK11A Intron 0.26 TCGA-NK-A7XE-01 1 173493995 173493995 C A SLC9C2 Missense_Mutation p.A813S 0.23 tolerated(0.8) benign(0.021) TCGA-NK-A7XE-01 1 179562816 179562816 G C TDRD5 Missense_Mutation p.D152H 0.31 deleterious(0) possibly_damaging(0.835) TCGA-NK-A7XE-01 1 198718574 198718574 G A PTPRC Missense_Mutation p.E990K 0.26 deleterious(0) probably_damaging(0.976) TCGA-NK-A7XE-01 1 200549436 200549436 G C KIF14 Missense_Mutation p.F1137L 0.28 tolerated(0.13) benign(0.026) TCGA-NK-A7XE-01 1 76384631 76384631 C T ASB17 3'UTR 0.20 TCGA-NK-A7XE-01 1 84356150 84356150 C T TTLL7 Silent p.V741V 0.30 TCGA-NK-A7XE-01 20 19698216 19698216 C T SLC24A3 Silent p.L588L 0.27 TCGA-NK-A7XE-01 20 23804554 23804554 C A CST2 3'UTR 0.50 TCGA-NK-A7XE-01 20 32194787 32194787 G A CBFA2T2 Silent p.A29A 0.26 TCGA-NK-A7XE-01 20 32199088 32199088 G A CBFA2T2 Missense_Mutation p.D132N 0.26 deleterious(0) probably_damaging(0.99) TCGA-NK-A7XE-01 20 33590978 33590978 C T TRPC4AP Missense_Mutation p.D789N 0.25 tolerated_low_confidence(0.13) benign(0.231) TCGA-NK-A7XE-01 20 36841800 36841800 C G KIAA1755 Missense_Mutation p.E1083Q 0.44 deleterious(0.04) possibly_damaging(0.575) TCGA-NK-A7XE-01 20 36841941 36841941 C T KIAA1755 Missense_Mutation p.E1036K 0.31 tolerated(0.06) probably_damaging(0.998) TCGA-NK-A7XE-01 20 3686427 3686427 G C SIGLEC1 Missense_Mutation p.H224D 0.41 tolerated(0.18) benign(0.21) TCGA-NK-A7XE-01 20 56093659 56093659 C T CTCFL Intron 0.33 TCGA-NK-A7XE-01 21 47706916 47706916 T C YBEY Missense_Mutation p.L30S 0.30 deleterious(0) probably_damaging(0.991) TCGA-NK-A7XE-01 2 168102294 168102294 G A XIRP2 Silent p.L1464L 0.37 TCGA-NK-A7XE-01 2 210908747 210908747 C T KANSL1L Missense_Mutation p.E613K 0.35 tolerated(0.19) benign(0.008) TCGA-NK-A7XE-01 2 226378190 226378190 C T NYAP2 Missense_Mutation p.P109S 0.33 tolerated(0.4) benign(0.078) TCGA-NK-A7XE-01 2 238256455 238256455 G A COL6A3 Nonsense_Mutation p.R2342* 0.50 TCGA-NK-A7XE-01 2 25057480 25057480 C T ADCY3 Missense_Mutation p.R614Q 0.26 deleterious(0.05) possibly_damaging(0.895) TCGA-NK-A7XE-01 2 45170033 45170033 G A SIX3 Missense_Mutation p.A264T 0.19 deleterious(0.01) probably_damaging(1) TCGA-NK-A7XE-01 2 47357105 47357105 C G C2orf61 Missense_Mutation p.R165T 0.20 deleterious(0) probably_damaging(0.999) TCGA-NK-A7XE-01 3 108353814 108353814 G C DZIP3 Missense_Mutation p.D305H 0.42 deleterious(0) probably_damaging(0.999) TCGA-NK-A7XE-01 3 161214876 161214876 C T OTOL1 Missense_Mutation p.P94L 0.38 tolerated(0.07) unknown(0) TCGA-NK-A7XE-01 3 167086333 167086333 A G ZBBX Missense_Mutation p.V33A 0.09 deleterious(0.03) benign(0.311) TCGA-NK-A7XE-01 3 183774705 183774707 CAG - HTR3C In_Frame_Del p.S146del 0.28 TCGA-NK-A7XE-01 3 187451486 187451486 T C RP11-211G3.3 Missense_Mutation p.S102P 0.25 possibly_damaging(0.514) TCGA-NK-A7XE-01 4 103827716 103827716 G A SLC9B1 Missense_Mutation p.S391L 0.24 tolerated(0.09) benign(0.033) TCGA-NK-A7XE-01 4 4275307 4275307 T C LYAR Intron 0.26 TCGA-NK-A7XE-01 5 102444339 102444339 G A GIN1 Missense_Mutation p.H25Y 0.26 tolerated(0.07) probably_damaging(0.943) TCGA-NK-A7XE-01 5 1052452 1052452 G C SLC12A7 3'UTR 0.29 TCGA-NK-A7XE-01 5 112379283 112379283 G A MCC Silent p.L900L 0.43 TCGA-NK-A7XE-01 5 132270471 132270471 C G AFF4 Missense_Mutation p.E96Q 0.38 tolerated(0.3) benign(0.378) TCGA-NK-A7XE-01 5 140175086 140175086 C G PCDHA2 Missense_Mutation p.F179L 0.26 tolerated_low_confidence(0.25) benign(0) TCGA-NK-A7XE-01 5 140752336 140752336 A G PCDHGB3 Missense_Mutation p.D792G 0.25 tolerated(0.32) benign(0.003) TCGA-NK-A7XE-01 5 179226278 179226278 C T MGAT4B Silent p.R373R 0.32 TCGA-NK-A7XE-01 5 179226503 179226503 C T MGAT4B Intron 0.33 TCGA-NK-A7XE-01 5 179228370 179228370 C G MGAT4B Missense_Mutation p.E189D 0.36 deleterious(0.02) benign(0.405) TCGA-NK-A7XE-01 5 40843658 40843658 G A CARD6 Missense_Mutation p.E230K 0.46 tolerated(0.07) benign(0.181) TCGA-NK-A7XE-01 5 55094363 55094363 A G DDX4 Missense_Mutation p.K527E 0.42 deleterious(0.01) probably_damaging(1) TCGA-NK-A7XE-01 5 7832080 7832080 G A C5orf49 Silent p.P109P 0.22 TCGA-NK-A7XE-01 5 82373173 82373173 C T TMEM167A 5'UTR 0.36 TCGA-NK-A7XE-01 6 101095161 101095161 C T ASCC3 Missense_Mutation p.R1140K 0.12 tolerated(1) benign(0.001) TCGA-NK-A7XE-01 6 32942423 32942423 C G BRD2 Missense_Mutation p.P72A 0.52 deleterious(0.01) benign(0.228) TCGA-NK-A7XE-01 6 44147857 44147857 G C CAPN11 Missense_Mutation p.D533H 0.22 deleterious(0) probably_damaging(0.997) TCGA-NK-A7XE-01 6 75843032 75843032 C G COL12A1 Missense_Mutation p.R1924P 0.30 benign(0.036) TCGA-NK-A7XE-01 6 76540194 76540194 C T MYO6 Missense_Mutation p.S108F 0.05 deleterious(0) unknown(0) TCGA-NK-A7XE-01 7 100677522 100677522 G C MUC17 Missense_Mutation p.R942T 0.36 benign(0.001) TCGA-NK-A7XE-01 7 11676124 11676124 G A THSD7A Missense_Mutation p.R219C 0.29 deleterious(0) probably_damaging(1) TCGA-NK-A7XE-01 7 131859632 131859632 C T PLXNA4 Missense_Mutation p.D1308N 0.40 deleterious(0.03) probably_damaging(0.998) TCGA-NK-A7XE-01 7 139801771 139801771 C G KDM7A Missense_Mutation p.E540Q 0.26 tolerated(0.06) probably_damaging(0.998) TCGA-NK-A7XE-01 7 20698871 20698871 C A ABCB5 Intron 0.44 TCGA-NK-A7XE-01 7 23240411 23240411 G C NUPL2 3'UTR 0.43 TCGA-NK-A7XE-01 7 24839751 24839751 G T OSBPL3 3'UTR 0.33 TCGA-NK-A7XE-01 7 42005002 42005002 G A GLI3 Silent p.Y1223Y 0.21 TCGA-NK-A7XE-01 7 5983067 5983067 G C RSPH10B Missense_Mutation p.S549C 0.27 deleterious(0) possibly_damaging(0.894) TCGA-NK-A7XE-01 7 66703445 66703445 G A TYW1 Missense_Mutation p.E710K 0.37 deleterious(0.01) benign(0.285) TCGA-NK-A7XE-01 8 146068323 146068323 G A ZNF7 Missense_Mutation p.E611K 0.21 deleterious(0.03) probably_damaging(0.998) TCGA-NK-A7XE-01 8 25364596 25364596 A C CDCA2 Missense_Mutation p.K805T 0.38 tolerated(0.39) benign(0.009) TCGA-NK-A7XE-01 8 30701130 30701130 C A TEX15 Missense_Mutation p.D1802Y 0.28 deleterious(0) probably_damaging(1) TCGA-NK-A7XE-01 8 42977746 42977746 G T POMK Missense_Mutation p.W260L 0.41 deleterious(0) probably_damaging(0.987) TCGA-NK-A7XE-01 8 9590874 9590874 G A TNKS Missense_Mutation p.V745M 0.34 deleterious(0.03) probably_damaging(0.994) TCGA-NK-A7XE-01 9 103004930 103004930 C A INVS Missense_Mutation p.P292H 0.37 deleterious(0) probably_damaging(0.999) TCGA-NK-A7XE-01 9 131340504 131340504 G C SPTAN1 Missense_Mutation p.D401H 0.32 deleterious(0.03) probably_damaging(0.964) TCGA-NK-A7XE-01 9 134136638 134136638 G T FAM78A Silent p.T141T 0.38 TCGA-NK-A7XE-01 9 98218638 98218638 T C PTCH1 Missense_Mutation p.I1076V 0.36 tolerated(0.06) possibly_damaging(0.669) TCGA-NK-A7XE-01 X 105281095 105281095 G A SERPINA7 5'UTR 0.55 TCGA-NK-A7XE-01 X 24006388 24006388 T C KLHL15 Missense_Mutation p.K489E 0.51 deleterious(0.01) probably_damaging(0.965) TCGA-O2-A52N-01 10 102676799 102676799 G T FAM178A Missense_Mutation p.R219S 0.22 tolerated(0.44) probably_damaging(0.998) TCGA-O2-A52N-01 10 105974088 105974088 G C WDR96 Missense_Mutation p.C171W 0.31 deleterious(0) probably_damaging(1) TCGA-O2-A52N-01 10 11207524 11207524 T A CELF2 Missense_Mutation p.F50L 0.22 deleterious(0) probably_damaging(0.997) TCGA-O2-A52N-01 10 112344139 112344139 T C SMC3 Silent p.N430N 0.21 TCGA-O2-A52N-01 10 115364596 115364596 G T NRAP Missense_Mutation p.H1333Q 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-O2-A52N-01 10 118030449 118030449 G A GFRA1 Silent p.R73R 0.39 TCGA-O2-A52N-01 10 118196289 118196290 - A PNLIPRP3 Frame_Shift_Ins p.T40Nfs*35 0.27 TCGA-O2-A52N-01 10 118220772 118220772 C A PNLIPRP3 Missense_Mutation p.L260M 0.17 tolerated(0.06) benign(0.378) TCGA-O2-A52N-01 10 127540872 127540872 C G DHX32 Missense_Mutation p.M447I 0.17 tolerated(0.65) benign(0.001) TCGA-O2-A52N-01 10 129903711 129903711 C A MKI67 Silent p.V2131V 0.22 TCGA-O2-A52N-01 10 129905742 129905742 G C MKI67 Missense_Mutation p.H1454Q 0.25 tolerated(0.52) benign(0) TCGA-O2-A52N-01 10 16562730 16562730 G A C1QL3 Missense_Mutation p.A112V 0.33 tolerated(0.12) benign(0.001) TCGA-O2-A52N-01 10 17840587 17840587 A T TMEM236 3'UTR 0.49 TCGA-O2-A52N-01 10 18957516 18957516 A T ARL5B Silent p.I55I 0.12 TCGA-O2-A52N-01 10 26465717 26465717 G T MYO3A Missense_Mutation p.G1461C 0.18 deleterious_low_confidence(0) possibly_damaging(0.738) TCGA-O2-A52N-01 10 27437951 27437951 G A YME1L1 Missense_Mutation p.H18Y 0.17 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-O2-A52N-01 10 38305815 38305815 A C ZNF33A Missense_Mutation p.Q9P 0.26 deleterious(0) possibly_damaging(0.732) TCGA-O2-A52N-01 10 42832260 42832260 T A RP11-313J2.1 RNA 0.18 TCGA-O2-A52N-01 10 429999 429999 C T DIP2C Missense_Mutation p.R615Q 0.18 deleterious(0) probably_damaging(0.996) TCGA-O2-A52N-01 10 48388497 48388497 G T RBP3 Missense_Mutation p.P794Q 0.21 deleterious(0) probably_damaging(0.968) TCGA-O2-A52N-01 10 48429424 48429424 G T GDF10 Silent p.A154A 0.38 TCGA-O2-A52N-01 10 49612896 49612896 G T MAPK8 Missense_Mutation p.A42S 0.12 tolerated(1) benign(0.148) TCGA-O2-A52N-01 10 50535028 50535028 C T C10orf71 3'UTR 0.38 TCGA-O2-A52N-01 10 63170020 63170020 C A TMEM26 3'UTR 0.25 TCGA-O2-A52N-01 10 6539007 6539007 C T PRKCQ Missense_Mutation p.R217Q 0.24 tolerated(0.21) benign(0.097) TCGA-O2-A52N-01 10 71332352 71332352 C T NEUROG3 Missense_Mutation p.E150K 0.32 tolerated(0.24) benign(0.118) TCGA-O2-A52N-01 10 75407322 75407322 C A SYNPO2L Missense_Mutation p.K696N 0.21 deleterious(0) probably_damaging(0.996) TCGA-O2-A52N-01 10 76855385 76855385 G C DUSP13 Silent p.V164V 0.20 TCGA-O2-A52N-01 10 7830106 7830106 T A ATP5C1 5'UTR 0.16 TCGA-O2-A52N-01 10 88211877 88211877 C A WAPAL Silent p.L987L 0.24 TCGA-O2-A52N-01 10 88676900 88676900 A T BMPR1A Missense_Mutation p.T229S 0.17 tolerated(0.09) possibly_damaging(0.676) TCGA-O2-A52N-01 10 93611053 93611053 A T TNKS2 Missense_Mutation p.K925N 0.14 deleterious(0) benign(0.218) TCGA-O2-A52N-01 10 99661391 99661391 G A CRTAC1 Silent p.I334I 0.05 TCGA-O2-A52N-01 11 10546896 10546896 C A RNF141 Nonsense_Mutation p.E93* 0.34 TCGA-O2-A52N-01 11 107968419 107968419 C G CUL5 Silent p.V654V 0.27 TCGA-O2-A52N-01 11 108464248 108464248 G A EXPH5 Missense_Mutation p.P6S 0.19 deleterious(0.01) benign(0.023) TCGA-O2-A52N-01 11 111592601 111592601 C T SIK2 Silent p.S664S 0.19 TCGA-O2-A52N-01 11 113679109 113679109 C A USP28 Missense_Mutation p.A739S 0.14 tolerated(0.19) benign(0.375) TCGA-O2-A52N-01 11 124180439 124180439 G C OR8D1 Missense_Mutation p.S75C 0.20 deleterious(0) possibly_damaging(0.868) TCGA-O2-A52N-01 11 124792308 124792308 C A HEPACAM Missense_Mutation p.M308I 0.19 tolerated(0.12) benign(0.005) TCGA-O2-A52N-01 11 125479327 125479327 A G STT3A Splice_Site p.X321_splice 0.18 TCGA-O2-A52N-01 11 125889529 125889529 G A CDON Silent p.L161L 0.21 TCGA-O2-A52N-01 11 1272093 1272093 T C MUC5B Silent p.T4661T 0.61 TCGA-O2-A52N-01 11 131781386 131781386 G A NTM Missense_Mutation p.C4Y 0.31 tolerated(0.3) benign(0.078) TCGA-O2-A52N-01 11 134080164 134080164 C A NCAPD3 Missense_Mutation p.E189D 0.12 tolerated(0.15) benign(0.008) TCGA-O2-A52N-01 11 17436121 17436121 T C ABCC8 Silent p.P776P 0.27 TCGA-O2-A52N-01 11 17531121 17531121 T A USH1C Missense_Mutation p.T599S 0.36 tolerated_low_confidence(0.74) benign(0.02) TCGA-O2-A52N-01 11 193078 193078 G T SCGB1C1 5'Flank 0.19 TCGA-O2-A52N-01 11 24998155 24998155 C A LUZP2 Missense_Mutation p.L181M 0.19 deleterious(0) probably_damaging(0.997) TCGA-O2-A52N-01 11 2979690 2979690 A G NAP1L4 Silent p.V277V 0.29 TCGA-O2-A52N-01 11 3050305 3050305 G C CARS Missense_Mutation p.P318A 0.32 tolerated(0.13) benign(0.433) TCGA-O2-A52N-01 11 31625367 31625367 G A ELP4 Missense_Mutation p.R189K 0.17 tolerated(0.89) benign(0.006) TCGA-O2-A52N-01 11 31823184 31823184 G T PAX6 Nonsense_Mutation p.C108* 0.34 TCGA-O2-A52N-01 11 34112199 34112199 G A CAPRIN1 Missense_Mutation p.A510T 0.21 tolerated(0.42) probably_damaging(0.974) TCGA-O2-A52N-01 11 397085 397085 A G PKP3 Missense_Mutation p.Y195C 0.37 tolerated(0.14) benign(0.002) TCGA-O2-A52N-01 11 4411244 4411244 T A TRIM21 Silent p.A132A 0.30 TCGA-O2-A52N-01 11 46776578 46776578 T C CKAP5 Missense_Mutation p.M1577V 0.29 tolerated(0.11) benign(0.093) TCGA-O2-A52N-01 11 48161183 48161183 G T PTPRJ Missense_Mutation p.E766D 0.27 tolerated(0.31) benign(0.019) TCGA-O2-A52N-01 11 5080008 5080008 C T OR52E2 Missense_Mutation p.V284M 0.23 deleterious(0.02) probably_damaging(0.98) TCGA-O2-A52N-01 11 5080407 5080407 A G OR52E2 Missense_Mutation p.F151L 0.25 tolerated(0.69) benign(0.002) TCGA-O2-A52N-01 11 55110846 55110846 T G OR4A16 Missense_Mutation p.M57R 0.03 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-O2-A52N-01 11 55136204 55136204 G T OR4A15 Missense_Mutation p.C282F 0.38 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-O2-A52N-01 11 55563706 55563706 G T OR5D14 Silent p.V225V 0.41 TCGA-O2-A52N-01 11 55681219 55681219 A T OR5W2 Silent p.L280L 0.13 TCGA-O2-A52N-01 11 55872934 55872934 G C OR8H2 Missense_Mutation p.R139T 0.43 tolerated(0.24) benign(0.035) TCGA-O2-A52N-01 11 57971288 57971288 G C OR1S2 Silent p.V122V 0.17 TCGA-O2-A52N-01 11 57983083 57983083 C A OR1S1 Silent p.V289V 0.16 TCGA-O2-A52N-01 11 61205509 61205509 A G SDHAF2 Silent p.T98T 0.47 TCGA-O2-A52N-01 11 64670056 64670056 C A ATG2A Missense_Mutation p.V1237L 0.22 tolerated(0.48) benign(0.006) TCGA-O2-A52N-01 11 65272619 65272619 G T MALAT1 RNA 0.30 TCGA-O2-A52N-01 11 65347409 65347409 C - EHBP1L1 Frame_Shift_Del p.H89Tfs*45 0.22 TCGA-O2-A52N-01 11 65721041 65721041 C A TSGA10IP RNA 0.27 TCGA-O2-A52N-01 11 65733686 65733686 G T SART1 Silent p.A326A 0.25 TCGA-O2-A52N-01 11 6661480 6661480 C A DCHS1 Missense_Mutation p.E455D 0.40 deleterious(0.03) probably_damaging(0.999) TCGA-O2-A52N-01 11 68838850 68838850 A G TPCN2 Missense_Mutation p.T308A 0.25 deleterious(0) possibly_damaging(0.9) TCGA-O2-A52N-01 11 7649522 7649522 A T PPFIBP2 Missense_Mutation p.E278V 0.33 deleterious(0) probably_damaging(0.995) TCGA-O2-A52N-01 11 78437123 78437123 C A TENM4 Splice_Site p.X1184_splice 0.16 TCGA-O2-A52N-01 11 8013706 8013706 G T EIF3F Missense_Mutation p.G171C 0.12 deleterious(0) probably_damaging(0.999) TCGA-O2-A52N-01 11 92534657 92534657 G T FAT3 Silent p.G2826G 0.11 TCGA-O2-A52N-01 11 92577349 92577349 A G FAT3 Missense_Mutation p.I3606V 0.24 benign(0.005) TCGA-O2-A52N-01 11 93464212 93464212 G C KIAA1731 3'Flank 0.23 TCGA-O2-A52N-01 11 94533472 94533472 A G AMOTL1 Silent p.V372V 0.18 TCGA-O2-A52N-01 12 112844570 112844570 G T RPL6 Missense_Mutation p.T154N 0.37 deleterious(0.04) benign(0.078) TCGA-O2-A52N-01 12 113907148 113907148 C G LHX5 Missense_Mutation p.R59P 0.13 deleterious(0.01) benign(0.102) TCGA-O2-A52N-01 12 115114183 115114183 G T TBX3 Missense_Mutation p.A345D 0.30 deleterious(0.05) benign(0.115) TCGA-O2-A52N-01 12 121458372 121458372 C A OASL Missense_Mutation p.A513S 0.35 tolerated_low_confidence(0.52) benign(0) TCGA-O2-A52N-01 12 122687920 122687920 C G LRRC43 Silent p.T634T 0.20 TCGA-O2-A52N-01 12 123342736 123342736 C G HIP1R Missense_Mutation p.L635V 0.12 tolerated(0.78) benign(0.008) TCGA-O2-A52N-01 12 123706331 123706331 C G MPHOSPH9 Missense_Mutation p.G2R 0.04 deleterious_low_confidence(0) probably_damaging(1) TCGA-O2-A52N-01 12 125396679 125396679 G T UBC Missense_Mutation p.L547I 0.20 tolerated(0.11) probably_damaging(0.959) TCGA-O2-A52N-01 12 133215748 133215748 G A POLE Missense_Mutation p.R1839C 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-O2-A52N-01 12 133249422 133249422 G C POLE Missense_Mutation p.L493V 0.18 deleterious(0) probably_damaging(0.995) TCGA-O2-A52N-01 12 21331952 21331952 T A SLCO1B1 Missense_Mutation p.L242Q 0.27 deleterious(0) probably_damaging(0.993) TCGA-O2-A52N-01 12 2602493 2602493 G T CACNA1C Missense_Mutation p.A352S 0.32 tolerated(0.21) possibly_damaging(0.856) TCGA-O2-A52N-01 12 26383868 26383868 C A SSPN Silent p.I197I 0.23 TCGA-O2-A52N-01 12 2693768 2693768 G T CACNA1C Missense_Mutation p.R775I 0.29 deleterious(0.01) probably_damaging(0.951) TCGA-O2-A52N-01 12 31819073 31819073 G T METTL20 Missense_Mutation p.G123W 0.25 deleterious(0) probably_damaging(1) TCGA-O2-A52N-01 12 33559945 33559945 G C SYT10 Missense_Mutation p.R286G 0.33 deleterious(0) possibly_damaging(0.709) TCGA-O2-A52N-01 12 41327292 41327292 G A CNTN1 Missense_Mutation p.V245I 0.17 deleterious(0.04) benign(0.164) TCGA-O2-A52N-01 12 45269614 45269614 G A NELL2 Silent p.I63I 0.45 TCGA-O2-A52N-01 12 46328004 46328004 G C SCAF11 Missense_Mutation p.S196C 0.36 tolerated(0.13) benign(0.015) TCGA-O2-A52N-01 12 49723975 49723975 G T TROAP Silent p.L449L 0.38 TCGA-O2-A52N-01 12 50392955 50392955 C G RACGAP1 Missense_Mutation p.G283A 0.40 tolerated(0.16) benign(0.059) TCGA-O2-A52N-01 12 5154357 5154357 C A KCNA5 Missense_Mutation p.S348R 0.28 deleterious(0) probably_damaging(0.999) TCGA-O2-A52N-01 12 52451140 52451140 A G NR4A1 Missense_Mutation p.K469E 0.24 tolerated(0.12) possibly_damaging(0.691) TCGA-O2-A52N-01 12 52647423 52647423 G T KRT7 3'Flank 0.20 TCGA-O2-A52N-01 12 52789808 52789808 C A KRT82 Missense_Mutation p.G426V 0.26 deleterious(0) probably_damaging(1) TCGA-O2-A52N-01 12 53233101 53233101 G T KRT78 Missense_Mutation p.S453R 0.35 tolerated(0.2) benign(0.001) TCGA-O2-A52N-01 12 54893246 54893246 C G NCKAP1L Missense_Mutation p.S70R 0.22 deleterious(0.02) possibly_damaging(0.487) TCGA-O2-A52N-01 12 55357612 55357612 G A TESPA1 Missense_Mutation p.S190F 0.18 deleterious(0) probably_damaging(1) TCGA-O2-A52N-01 12 55524037 55524037 C - OR9K2 Frame_Shift_Del p.T163Hfs*25 0.27 TCGA-O2-A52N-01 12 7249005 7249005 C T C1RL Silent p.V482V 0.05 TCGA-O2-A52N-01 12 72771852 72771852 A G TRHDE Missense_Mutation p.I377M 0.35 deleterious(0) benign(0.05) TCGA-O2-A52N-01 12 72969125 72969125 G T TRHDE Missense_Mutation p.R696M 0.11 tolerated(0.09) possibly_damaging(0.832) TCGA-O2-A52N-01 12 85459070 85459070 G A LRRIQ1 Missense_Mutation p.G808S 0.34 tolerated(0.08) possibly_damaging(0.828) TCGA-O2-A52N-01 12 85459071 85459071 G T LRRIQ1 Missense_Mutation p.G808V 0.33 deleterious(0) probably_damaging(0.991) TCGA-O2-A52N-01 12 85518199 85518199 G T LRRIQ1 Missense_Mutation p.K1303N 0.15 tolerated(0.24) benign(0.002) TCGA-O2-A52N-01 12 9000171 9000171 G A A2ML1 Silent p.Q570Q 0.03 TCGA-O2-A52N-01 12 90010605 90010605 C G ATP2B1 Missense_Mutation p.G681R 0.13 deleterious(0) probably_damaging(1) TCGA-O2-A52N-01 13 101910880 101910880 C A NALCN Missense_Mutation p.V394L 0.19 deleterious(0.04) benign(0.199) TCGA-O2-A52N-01 13 24466001 24466001 C - C1QTNF9B Frame_Shift_Del p.P144Lfs*37 0.24 TCGA-O2-A52N-01 13 29675069 29675069 G T MTUS2 Missense_Mutation p.G879V 0.44 tolerated(0.62) benign(0) TCGA-O2-A52N-01 13 32821510 32821510 G T FRY Silent p.R2293R 0.08 TCGA-O2-A52N-01 13 33249993 33249993 G C PDS5B Missense_Mutation p.E287Q 0.10 tolerated(0.43) benign(0.016) TCGA-O2-A52N-01 13 37679316 37679316 G T CSNK1A1L Silent p.G26G 0.35 TCGA-O2-A52N-01 13 42263539 42263539 G C VWA8 Nonsense_Mutation p.S1361* 0.09 TCGA-O2-A52N-01 13 46054269 46054269 G C COG3 Missense_Mutation p.R131S 0.31 tolerated(0.4) benign(0.048) TCGA-O2-A52N-01 13 46933724 46933724 T C KIAA0226L Missense_Mutation p.M388V 0.56 tolerated(1) benign(0.001) TCGA-O2-A52N-01 13 52952268 52952268 G C THSD1 Missense_Mutation p.Q613E 0.40 tolerated(0.08) benign(0.021) TCGA-O2-A52N-01 13 88329599 88329599 G T SLITRK5 Missense_Mutation p.L652F 0.40 tolerated(0.63) benign(0.001) TCGA-O2-A52N-01 13 97484949 97484949 C G HS6ST3 Missense_Mutation p.L305V 0.20 deleterious(0) probably_damaging(0.999) TCGA-O2-A52N-01 14 100135256 100135256 G T HHIPL1 Intron 0.55 TCGA-O2-A52N-01 14 101335450 101335450 C A MIR493 RNA 0.43 TCGA-O2-A52N-01 14 101498321 101498321 C A MIR495 5'Flank 0.47 TCGA-O2-A52N-01 14 103478448 103478448 C G CDC42BPB Missense_Mutation p.G85R 0.56 deleterious(0) probably_damaging(1) TCGA-O2-A52N-01 14 23846399 23846399 G C CMTM5 5'UTR 0.30 TCGA-O2-A52N-01 14 23885230 23885230 G T MYH7 Missense_Mutation p.L1646I 0.22 tolerated(0.16) benign(0.025) TCGA-O2-A52N-01 14 31813135 31813135 A G HEATR5A Silent p.H772H 0.65 TCGA-O2-A52N-01 14 55647410 55647410 T A DLGAP5 Missense_Mutation p.T223S 0.71 tolerated(0.16) benign(0.04) TCGA-O2-A52N-01 14 62567345 62567345 G T SYT16 Nonsense_Mutation p.E620* 0.67 TCGA-O2-A52N-01 14 73586592 73586592 G C RBM25 3'UTR 0.12 TCGA-O2-A52N-01 15 20643958 20643958 G C HERC2P3 RNA 0.20 TCGA-O2-A52N-01 15 22382483 22382484 - A OR4N4 Frame_Shift_Ins p.N5Kfs*84 0.18 TCGA-O2-A52N-01 15 22382556 22382556 T C OR4N4 Silent p.F28F 0.32 TCGA-O2-A52N-01 15 24922023 24922023 C A NPAP1 Missense_Mutation p.P337T 0.48 deleterious(0.01) probably_damaging(0.978) TCGA-O2-A52N-01 15 24924494 24924494 G A NPAP1 3'UTR 0.50 TCGA-O2-A52N-01 15 26806095 26806095 T G GABRB3 Missense_Mutation p.K355T 0.42 tolerated(0.44) benign(0.278) TCGA-O2-A52N-01 15 27777843 27777843 A T GABRG3 Missense_Mutation p.E407V 0.42 tolerated(0.08) possibly_damaging(0.878) TCGA-O2-A52N-01 15 28228538 28228538 C - OCA2 Frame_Shift_Del p.D486Tfs*13 0.30 TCGA-O2-A52N-01 15 51223149 51223149 C G AP4E1 Missense_Mutation p.L284V 0.15 deleterious(0) probably_damaging(0.998) TCGA-O2-A52N-01 15 52672036 52672036 C A MYO5A Silent p.A694A 0.33 TCGA-O2-A52N-01 15 63928202 63928202 C G HERC1 Silent p.R4124R 0.43 TCGA-O2-A52N-01 15 73855598 73855598 T C NPTN Missense_Mutation p.D372G 0.38 deleterious(0.01) benign(0.004) TCGA-O2-A52N-01 15 73996578 73996578 G T CD276 Silent p.T378T 0.56 TCGA-O2-A52N-01 15 77906571 77906571 C T LINGO1 Missense_Mutation p.A560T 0.54 deleterious(0.01) possibly_damaging(0.657) TCGA-O2-A52N-01 15 81660619 81660619 C T TMC3 Missense_Mutation p.R96Q 0.08 deleterious(0) probably_damaging(0.947) TCGA-O2-A52N-01 15 84611523 84611523 A C ADAMTSL3 Missense_Mutation p.I765L 0.40 tolerated(0.24) benign(0.292) TCGA-O2-A52N-01 16 1741943 1741943 C A HN1L Missense_Mutation p.P98Q 0.19 deleterious(0.05) probably_damaging(0.978) TCGA-O2-A52N-01 16 20370566 20370566 T C PDILT 3'UTR 0.21 TCGA-O2-A52N-01 16 20380837 20380839 TGC A PDILT Frame_Shift_Del p.R364Lfs*5 0.18 TCGA-O2-A52N-01 16 20477007 20477007 G A ACSM2A Missense_Mutation p.V116M 0.26 deleterious(0) probably_damaging(0.972) TCGA-O2-A52N-01 16 20482531 20482531 G T ACSM2A Missense_Mutation p.D245Y 0.27 tolerated(0.06) probably_damaging(1) TCGA-O2-A52N-01 16 21739603 21739603 G A OTOA Silent p.G686G 0.19 TCGA-O2-A52N-01 16 2510640 2510640 C T C16orf59 Missense_Mutation p.R48W 0.31 tolerated(0.31) benign(0) TCGA-O2-A52N-01 16 2821467 2821467 C T TCEB2 3'UTR 0.18 TCGA-O2-A52N-01 16 28914175 28914175 C A ATP2A1 Missense_Mutation p.P896H 0.23 deleterious(0.01) probably_damaging(1) TCGA-O2-A52N-01 16 28914176 28914176 C T ATP2A1 Silent p.P896P 0.23 TCGA-O2-A52N-01 16 30594400 30594400 G A ZNF785 Silent p.C233C 0.15 TCGA-O2-A52N-01 16 30779843 30779843 A T RNF40 Silent p.A657A 0.31 TCGA-O2-A52N-01 16 3139725 3139725 C A ZSCAN10 Silent p.R515R 0.41 TCGA-O2-A52N-01 16 3493204 3493204 A C ZNF597 Intron 0.24 TCGA-O2-A52N-01 16 4748818 4748818 C T ANKS3 Missense_Mutation p.A512T 0.19 deleterious(0.01) benign(0.103) TCGA-O2-A52N-01 16 48395424 48395424 G C SIAH1 3'UTR 0.07 TCGA-O2-A52N-01 16 4925349 4925349 G T UBN1 Missense_Mutation p.G980W 0.32 deleterious(0) probably_damaging(1) TCGA-O2-A52N-01 16 49313396 49313396 T A CBLN1 Silent p.A167A 0.15 TCGA-O2-A52N-01 16 49313397 49313397 G T CBLN1 Missense_Mutation p.A167E 0.15 deleterious(0) possibly_damaging(0.901) TCGA-O2-A52N-01 16 51173232 51173232 A G SALL1 Silent p.G967G 0.28 TCGA-O2-A52N-01 16 52473062 52473062 G A TOX3 3'UTR 0.40 TCGA-O2-A52N-01 16 57787353 57787353 C A KATNB1 Silent p.R367R 0.11 TCGA-O2-A52N-01 16 61747762 61747762 G T CDH8 Missense_Mutation p.T546N 0.19 deleterious(0) probably_damaging(0.977) TCGA-O2-A52N-01 16 64981591 64981591 T C CDH11 Missense_Mutation p.Y769C 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-O2-A52N-01 16 66885608 66885608 G A CA7 Silent p.A165A 0.25 TCGA-O2-A52N-01 16 71012898 71012898 T G HYDIN Silent p.T1519T 0.27 TCGA-O2-A52N-01 16 74662409 74662409 C A RFWD3 Missense_Mutation p.G637V 0.23 deleterious(0) probably_damaging(0.987) TCGA-O2-A52N-01 16 75513574 75513574 C A CHST6 Silent p.S51S 0.25 TCGA-O2-A52N-01 16 787313 787313 C A NARFL Missense_Mutation p.R60M 0.22 deleterious(0) benign(0.375) TCGA-O2-A52N-01 16 81174991 81174991 G T PKD1L2 RNA 0.23 TCGA-O2-A52N-01 17 10537334 10537334 G T MYH3 Missense_Mutation p.Q1508K 0.34 deleterious(0.03) benign(0.001) TCGA-O2-A52N-01 17 11522910 11522910 G A DNAH9 Missense_Mutation p.E388K 0.37 benign(0.06) TCGA-O2-A52N-01 17 15619998 15619998 C T ZNF286A Silent p.H320H 0.46 TCGA-O2-A52N-01 17 18922778 18922778 C T SLC5A10 Silent p.I444I 0.29 TCGA-O2-A52N-01 17 19318470 19318470 A G RNF112 Missense_Mutation p.R416G 0.39 deleterious_low_confidence(0) possibly_damaging(0.905) TCGA-O2-A52N-01 17 21730725 21730725 C G UBBP4 Silent p.T9T 0.36 TCGA-O2-A52N-01 17 26115846 26115846 T C NOS2 Missense_Mutation p.K103E 0.32 tolerated(0.05) benign(0.002) TCGA-O2-A52N-01 17 26864375 26864375 T A FOXN1 Missense_Mutation p.L623Q 0.12 tolerated(0.07) probably_damaging(0.999) TCGA-O2-A52N-01 17 35605081 35605081 C G ACACA Splice_Site p.X722_splice 0.28 TCGA-O2-A52N-01 17 35733075 35733075 A G C17orf78 Missense_Mutation p.Y14C 0.38 tolerated(0.08) probably_damaging(0.999) TCGA-O2-A52N-01 17 40647203 40647203 G C ATP6V0A1 Missense_Mutation p.W496S 0.04 deleterious(0.05) possibly_damaging(0.904) TCGA-O2-A52N-01 17 4085602 4085602 G A ANKFY1 Silent p.N707N 0.45 TCGA-O2-A52N-01 17 41597593 41597593 G A DHX8 Silent p.G965G 0.15 TCGA-O2-A52N-01 17 46703210 46703210 G A HOXB9 Missense_Mutation p.S141L 0.16 tolerated(0.54) benign(0.004) TCGA-O2-A52N-01 17 47917257 47917257 G A TAC4 Missense_Mutation p.H89Y 0.21 deleterious(0.03) benign(0.446) TCGA-O2-A52N-01 17 4937629 4937629 G C SLC52A1 Missense_Mutation p.S52C 0.45 deleterious(0.02) benign(0.049) TCGA-O2-A52N-01 17 54428284 54428284 T G ANKFN1 Missense_Mutation p.F119V 0.06 tolerated(0.22) benign(0.223) TCGA-O2-A52N-01 17 56599121 56599121 G T SEPT4 Silent p.P312P 0.32 TCGA-O2-A52N-01 17 56699061 56699061 G A TEX14 Silent p.S168S 0.33 TCGA-O2-A52N-01 17 63052465 63052465 C G GNA13 Missense_Mutation p.E83Q 0.16 tolerated(0.23) benign(0.31) TCGA-O2-A52N-01 17 7256414 7256414 C A KCTD11 Nonsense_Mutation p.Y51* 0.60 TCGA-O2-A52N-01 17 73818662 73818662 G T UNK Missense_Mutation p.A648S 0.30 tolerated(0.31) benign(0.123) TCGA-O2-A52N-01 17 73843635 73843635 T G WBP2 Silent p.P196P 0.28 TCGA-O2-A52N-01 17 7578388 7578388 C G TP53 Missense_Mutation p.R181P 0.35 deleterious(0.02) probably_damaging(0.992) TCGA-O2-A52N-01 17 76109669 76109669 G A TMC6 Missense_Mutation p.H772Y 0.23 deleterious(0.01) possibly_damaging(0.904) TCGA-O2-A52N-01 17 78388969 78388969 G A ENDOV 5'UTR 0.22 TCGA-O2-A52N-01 17 79176114 79176114 G C AZI1 Missense_Mutation p.H238Q 0.16 tolerated(0.66) benign(0.004) TCGA-O2-A52N-01 17 80332832 80332832 A T UTS2R Missense_Mutation p.Y211F 0.55 deleterious(0.01) probably_damaging(0.971) TCGA-O2-A52N-01 17 8216287 8216287 A T ARHGEF15 Missense_Mutation p.T217S 0.50 tolerated_low_confidence(0.13) benign(0.003) TCGA-O2-A52N-01 17 8701507 8701507 C A MFSD6L Missense_Mutation p.C311F 0.55 deleterious(0) probably_damaging(1) TCGA-O2-A52N-01 18 14543272 14543272 C G POTEC 5'Flank 0.42 TCGA-O2-A52N-01 18 14752594 14752594 G T ANKRD30B Missense_Mutation p.G84V 0.05 deleterious(0) probably_damaging(0.999) TCGA-O2-A52N-01 18 22807545 22807545 C A ZNF521 Missense_Mutation p.G113C 0.13 tolerated(0.1) probably_damaging(0.969) TCGA-O2-A52N-01 18 23619390 23619390 T A SS18 Missense_Mutation p.Q213L 0.50 deleterious_low_confidence(0.02) probably_damaging(0.966) TCGA-O2-A52N-01 18 2573050 2573050 G T NDC80 Missense_Mutation p.Q22H 0.17 deleterious(0.02) possibly_damaging(0.541) TCGA-O2-A52N-01 18 28898152 28898152 C T DSG1 5'UTR 0.56 TCGA-O2-A52N-01 18 29115377 29115377 T C DSG2 Splice_Site p.X475_splice 0.17 TCGA-O2-A52N-01 18 31325676 31325676 C A ASXL3 Missense_Mutation p.P1955Q 0.13 benign(0.028) TCGA-O2-A52N-01 18 31803317 31803317 G T NOL4 5'UTR 0.23 TCGA-O2-A52N-01 18 3187509 3187509 T C MYOM1 Missense_Mutation p.I300V 0.19 tolerated(1) benign(0.004) TCGA-O2-A52N-01 18 57016400 57016400 C A LMAN1 Missense_Mutation p.M236I 0.48 tolerated(0.13) benign(0.013) TCGA-O2-A52N-01 18 6912131 6912131 T C ARHGAP28 Missense_Mutation p.I564T 0.07 deleterious(0) possibly_damaging(0.889) TCGA-O2-A52N-01 18 7231740 7231740 G C LRRC30 Missense_Mutation p.A202P 0.09 tolerated(0.26) probably_damaging(0.987) TCGA-O2-A52N-01 18 72999810 72999810 G C TSHZ1 Missense_Mutation p.K771N 0.31 deleterious(0) probably_damaging(0.947) TCGA-O2-A52N-01 18 77171100 77171100 G C NFATC1 Silent p.P262P 0.42 TCGA-O2-A52N-01 18 9557370 9557370 C G PPP4R1 Missense_Mutation p.R680P 0.08 deleterious(0.05) probably_damaging(0.999) TCGA-O2-A52N-01 19 21991816 21991816 G - ZNF43 Frame_Shift_Del p.Y342Tfs*77 0.22 TCGA-O2-A52N-01 19 22575700 22575700 T C ZNF98 Missense_Mutation p.K113E 0.31 tolerated(1) probably_damaging(0.956) TCGA-O2-A52N-01 19 2456781 2456781 G A LMNB2 Missense_Mutation p.R51C 0.45 tolerated(0.15) probably_damaging(0.97) TCGA-O2-A52N-01 19 30502094 30502094 C T URI1 Missense_Mutation p.H377Y 0.69 deleterious(0.03) possibly_damaging(0.833) TCGA-O2-A52N-01 19 307510 307510 C G MIER2 Missense_Mutation p.G409R 0.21 tolerated(0.43) benign(0.006) TCGA-O2-A52N-01 19 36111009 36111009 G T HAUS5 Missense_Mutation p.G501V 0.40 deleterious(0.01) probably_damaging(1) TCGA-O2-A52N-01 19 36940654 36940654 T A ZNF566 Missense_Mutation p.Q162L 0.28 tolerated(0.05) benign(0.411) TCGA-O2-A52N-01 19 37117564 37117564 C G ZNF382 Silent p.L255L 0.20 TCGA-O2-A52N-01 19 37441411 37441411 A - ZNF568 Frame_Shift_Del p.A454Pfs*124 0.10 TCGA-O2-A52N-01 19 39369869 39369869 A T SIRT2 Missense_Mutation p.S366T 0.14 tolerated(0.62) benign(0.002) TCGA-O2-A52N-01 19 39998913 39998913 C T DLL3 3'UTR 0.28 TCGA-O2-A52N-01 19 41008356 41008356 C G SPTBN4 Missense_Mutation p.A382G 0.30 deleterious(0) possibly_damaging(0.584) TCGA-O2-A52N-01 19 41128451 41128451 G T LTBP4 Silent p.A1187A 0.06 TCGA-O2-A52N-01 19 42301518 42301518 T A CEACAM3 Intron 0.11 TCGA-O2-A52N-01 19 43093697 43093697 G C CEACAM8 Silent p.V205V 0.31 TCGA-O2-A52N-01 19 44471474 44471474 C A ZNF221 Missense_Mutation p.T607K 0.29 deleterious_low_confidence(0) benign(0.03) TCGA-O2-A52N-01 19 44777547 44777547 A C ZNF233 Missense_Mutation p.K245T 0.25 tolerated(0.05) benign(0.362) TCGA-O2-A52N-01 19 47228100 47228100 T A STRN4 Missense_Mutation p.I527F 0.29 deleterious(0.01) possibly_damaging(0.483) TCGA-O2-A52N-01 19 49357011 49357011 C A PLEKHA4 Missense_Mutation p.R418S 0.37 tolerated(0.19) benign(0.394) TCGA-O2-A52N-01 19 50155702 50155702 G T SCAF1 Missense_Mutation p.V686L 0.32 unknown(0) TCGA-O2-A52N-01 19 50187219 50187219 G A PRMT1 Missense_Mutation p.E150K 0.11 tolerated(0.06) benign(0.082) TCGA-O2-A52N-01 19 51017832 51017832 C G ASPDH 5'Flank 0.11 TCGA-O2-A52N-01 19 51582886 51582886 G A KLK14 Missense_Mutation p.R112C 0.19 deleterious(0.02) benign(0.219) TCGA-O2-A52N-01 19 52659621 52659621 C A ZNF836 Nonsense_Mutation p.E439* 0.31 TCGA-O2-A52N-01 19 53057025 53057025 C A ZNF808 Missense_Mutation p.P286T 0.03 deleterious(0.01) probably_damaging(0.993) TCGA-O2-A52N-01 19 53058241 53058241 G A ZNF808 Missense_Mutation p.R691H 0.16 tolerated(0.46) benign(0.001) TCGA-O2-A52N-01 19 53282090 53282090 C A ZNF600 5'UTR 0.17 TCGA-O2-A52N-01 19 53612670 53612670 A T ZNF415 Missense_Mutation p.C210S 0.38 deleterious(0.03) benign(0.05) TCGA-O2-A52N-01 19 54299199 54299199 G T NLRP12 Nonsense_Mutation p.Y1004* 0.24 TCGA-O2-A52N-01 19 54313151 54313151 T A NLRP12 Nonsense_Mutation p.K588* 0.24 TCGA-O2-A52N-01 19 55111991 55111991 C A LILRA1 Missense_Mutation p.L443I 0.30 tolerated(0.09) benign(0.013) TCGA-O2-A52N-01 19 56249690 56249690 C A NLRP9 Missense_Mutation p.E17D 0.31 deleterious(0.02) possibly_damaging(0.887) TCGA-O2-A52N-01 19 56435298 56435298 C G NLRP13 Missense_Mutation p.E169Q 0.08 tolerated(0.05) possibly_damaging(0.723) TCGA-O2-A52N-01 19 56443658 56443658 G T NLRP13 Missense_Mutation p.T7N 0.21 deleterious_low_confidence(0.02) benign(0.396) TCGA-O2-A52N-01 19 57286485 57286485 G T ZIM2 Silent p.G385G 0.14 TCGA-O2-A52N-01 19 57325449 57325449 T A PEG3 Missense_Mutation p.D1454V 0.20 deleterious(0) probably_damaging(1) TCGA-O2-A52N-01 19 57328809 57328809 G C PEG3 Nonsense_Mutation p.S334* 0.44 TCGA-O2-A52N-01 19 648226 648226 T G RNF126 Missense_Mutation p.T280P 0.45 deleterious(0.04) probably_damaging(0.99) TCGA-O2-A52N-01 19 9069718 9069718 T C MUC16 Missense_Mutation p.T5910A 0.38 unknown(0) TCGA-O2-A52N-01 19 9362483 9362483 C A OR7E24 Missense_Mutation p.A255D 0.47 deleterious(0) probably_damaging(0.978) TCGA-O2-A52N-01 1 103496797 103496797 C A COL11A1 Missense_Mutation p.D219Y 0.16 probably_damaging(0.999) TCGA-O2-A52N-01 1 109192978 109192978 G T HENMT1 Missense_Mutation p.S204Y 0.14 tolerated(0.07) benign(0.179) TCGA-O2-A52N-01 1 111060847 111060847 T A KCNA10 Missense_Mutation p.D188V 0.11 deleterious(0) possibly_damaging(0.606) TCGA-O2-A52N-01 1 111770326 111770326 T G CHI3L2 5'UTR 0.33 TCGA-O2-A52N-01 1 111825938 111825938 T C CHIAP2 RNA 0.23 TCGA-O2-A52N-01 1 115828897 115828897 A C NGF Missense_Mutation p.F174V 0.09 deleterious(0) probably_damaging(1) TCGA-O2-A52N-01 1 120057175 120057175 C A HSD3B1 Silent p.L343L 0.25 TCGA-O2-A52N-01 1 145558850 145558850 C A ANKRD35 Missense_Mutation p.L157M 0.62 deleterious(0) probably_damaging(0.961) TCGA-O2-A52N-01 1 148009472 148009472 T G NBPF14 Missense_Mutation p.Q618P 0.04 deleterious(0.04) unknown(0) TCGA-O2-A52N-01 1 149754350 149754350 G T HIST2H2BF 3'UTR 0.50 TCGA-O2-A52N-01 1 149898514 149898514 C G SF3B4 Missense_Mutation p.A154P 0.14 deleterious(0) probably_damaging(0.986) TCGA-O2-A52N-01 1 152192435 152192435 C T HRNR Missense_Mutation p.S557N 0.11 unknown(0) TCGA-O2-A52N-01 1 156282013 156282013 C G CCT3 Splice_Site p.X325_splice 0.06 TCGA-O2-A52N-01 1 156504966 156504966 C T IQGAP3 Missense_Mutation p.E1166K 0.15 deleterious(0) possibly_damaging(0.782) TCGA-O2-A52N-01 1 156513968 156513968 C A IQGAP3 Missense_Mutation p.R812S 0.52 tolerated(0.62) benign(0.017) TCGA-O2-A52N-01 1 157650826 157650826 C A FCRL3 Missense_Mutation p.E634D 0.30 tolerated(0.07) possibly_damaging(0.585) TCGA-O2-A52N-01 1 158368489 158368489 A G OR10T2 Silent p.S256S 0.53 TCGA-O2-A52N-01 1 158369182 158369182 C G OR10T2 Missense_Mutation p.Q25H 0.62 deleterious(0.01) probably_damaging(0.998) TCGA-O2-A52N-01 1 159779197 159779197 G T FCRL6 Missense_Mutation p.V204L 0.49 deleterious(0) possibly_damaging(0.849) TCGA-O2-A52N-01 1 160001126 160001126 G T PIGM Missense_Mutation p.P135H 0.66 deleterious(0) probably_damaging(0.997) TCGA-O2-A52N-01 1 161494658 161494658 C G HSPA6 Missense_Mutation p.F70L 0.54 deleterious_low_confidence(0) possibly_damaging(0.811) TCGA-O2-A52N-01 1 161654776 161654776 T A RPL31P11 RNA 0.55 TCGA-O2-A52N-01 1 173934175 173934175 G A RC3H1 Missense_Mutation p.S473L 0.15 tolerated(0.34) benign(0.018) TCGA-O2-A52N-01 1 176863952 176863952 C A ASTN1 Missense_Mutation p.D896Y 0.61 deleterious(0.01) benign(0.369) TCGA-O2-A52N-01 1 184764010 184764010 T A FAM129A 3'UTR 0.58 TCGA-O2-A52N-01 1 185946996 185946996 C T HMCN1 Nonsense_Mutation p.Q817* 0.17 TCGA-O2-A52N-01 1 205052900 205052900 A G TMEM81 Silent p.P183P 0.08 TCGA-O2-A52N-01 1 211093032 211093032 G C KCNH1 Missense_Mutation p.P471R 0.54 deleterious(0) possibly_damaging(0.872) TCGA-O2-A52N-01 1 214170586 214170586 C A PROX1 Silent p.R236R 0.58 TCGA-O2-A52N-01 1 214637993 214637993 G A PTPN14 Nonsense_Mutation p.Q52* 0.60 TCGA-O2-A52N-01 1 214819593 214819593 C A CENPF Nonsense_Mutation p.S2227* 0.58 TCGA-O2-A52N-01 1 226074671 226074671 G A LEFTY1 Missense_Mutation p.P286L 0.61 deleterious(0.03) benign(0.109) TCGA-O2-A52N-01 1 227316824 227316824 C A CDC42BPA Missense_Mutation p.R500I 0.52 deleterious(0.01) benign(0.091) TCGA-O2-A52N-01 1 229661841 229661841 G C ABCB10 Missense_Mutation p.S583C 0.06 deleterious(0) probably_damaging(0.992) TCGA-O2-A52N-01 1 236212156 236212156 A T NID1 Missense_Mutation p.V120D 0.59 deleterious(0) possibly_damaging(0.86) TCGA-O2-A52N-01 1 240256577 240256577 G C FMN2 Missense_Mutation p.D390H 0.59 unknown(0) TCGA-O2-A52N-01 1 241797567 241797567 C A CHML Missense_Mutation p.C501F 0.59 deleterious(0.01) probably_damaging(1) TCGA-O2-A52N-01 1 247587299 247587299 A T NLRP3 Missense_Mutation p.Q185L 0.72 deleterious(0.02) benign(0.027) TCGA-O2-A52N-01 1 248129346 248129346 T C OR2AK2 Missense_Mutation p.I238T 0.62 tolerated(0.5) benign(0.015) TCGA-O2-A52N-01 1 248512909 248512909 T G OR14C36 Missense_Mutation p.I278R 0.52 deleterious(0) probably_damaging(0.951) TCGA-O2-A52N-01 1 248616842 248616842 G T OR2T2 Silent p.V248V 0.53 TCGA-O2-A52N-01 1 33958846 33958846 C G ZSCAN20 Missense_Mutation p.P502A 0.10 tolerated(0.15) probably_damaging(0.966) TCGA-O2-A52N-01 1 35223028 35223028 G T GJB5 Missense_Mutation p.V33L 0.35 tolerated(0.57) benign(0.047) TCGA-O2-A52N-01 1 36367595 36367595 G T AGO1 Missense_Mutation p.G396V 0.15 deleterious(0) probably_damaging(1) TCGA-O2-A52N-01 1 37980311 37980311 G T MEAF6 Missense_Mutation p.P13T 0.25 tolerated(0.45) benign(0.05) TCGA-O2-A52N-01 1 38184000 38184000 A G EPHA10 3'UTR 0.19 TCGA-O2-A52N-01 1 42645401 42645401 C G FOXJ3 Missense_Mutation p.D617H 0.06 deleterious(0) probably_damaging(0.99) TCGA-O2-A52N-01 1 44087710 44087710 G T PTPRF 3'UTR 0.31 TCGA-O2-A52N-01 1 44121359 44121359 C A KDM4A Missense_Mutation p.S79Y 0.40 deleterious(0) probably_damaging(0.984) TCGA-O2-A52N-01 1 53986347 53986347 G A GLIS1 Silent p.D387D 0.43 TCGA-O2-A52N-01 1 66081752 66081752 C T LEPR Missense_Mutation p.S686F 0.12 deleterious(0.02) possibly_damaging(0.71) TCGA-O2-A52N-01 1 67263762 67263762 T C INSL5 Silent p.R114R 0.38 TCGA-O2-A52N-01 1 74808579 74808579 G C FPGT-TNNI3K Missense_Mutation p.G360R 0.17 deleterious(0) probably_damaging(1) TCGA-O2-A52N-01 1 75038774 75038774 C A C1orf173 Nonsense_Mutation p.E874* 0.33 TCGA-O2-A52N-01 1 75766371 75766371 C A SLC44A5 Splice_Site p.X34_splice 0.14 TCGA-O2-A52N-01 1 79470851 79470851 G C ELTD1 Missense_Mutation p.P26A 0.11 tolerated_low_confidence(0.06) benign(0.021) TCGA-O2-A52N-01 1 9188713 9188713 T C GPR157 Missense_Mutation p.H125R 0.59 deleterious(0) probably_damaging(1) TCGA-O2-A52N-01 1 92811434 92811434 G T RPAP2 Missense_Mutation p.A551S 0.30 tolerated(0.09) benign(0.166) TCGA-O2-A52N-01 1 94481309 94481309 C A ABCA4 Silent p.L1766L 0.27 TCGA-O2-A52N-01 20 1617094 1617094 G C SIRPG Missense_Mutation p.T163R 0.24 tolerated(0.1) benign(0.257) TCGA-O2-A52N-01 20 18448076 18448076 G T POLR3F 5'UTR 0.44 TCGA-O2-A52N-01 20 20123565 20123565 C G C20orf26 Silent p.V308V 0.26 TCGA-O2-A52N-01 20 21324786 21324786 G C XRN2 Missense_Mutation p.G490A 0.25 tolerated(0.32) benign(0.156) TCGA-O2-A52N-01 20 3329179 3329179 G A C20orf194 Missense_Mutation p.A261V 0.12 tolerated(0.44) possibly_damaging(0.529) TCGA-O2-A52N-01 20 34025293 34025293 G T GDF5 Missense_Mutation p.S139Y 0.37 deleterious(0.02) benign(0.188) TCGA-O2-A52N-01 20 36852011 36852011 G - KIAA1755 Frame_Shift_Del p.H733Tfs*30 0.27 TCGA-O2-A52N-01 20 40709473 40709473 G T PTPRT 3'UTR 0.40 TCGA-O2-A52N-01 20 40733221 40733221 T A PTPRT Missense_Mutation p.K1176N 0.27 deleterious(0) probably_damaging(0.991) TCGA-O2-A52N-01 20 42194896 42194896 C G SGK2 5'UTR 0.39 TCGA-O2-A52N-01 20 50048939 50048939 G T NFATC2 Missense_Mutation p.A796D 0.25 tolerated(0.13) benign(0.083) TCGA-O2-A52N-01 20 62038665 62038665 G T KCNQ2 Missense_Mutation p.P651T 0.27 tolerated(0.3) benign(0.044) TCGA-O2-A52N-01 20 9459615 9459615 C A PLCB4 Missense_Mutation p.Q1182K 0.39 tolerated_low_confidence(0.28) benign(0) TCGA-O2-A52N-01 20 9546683 9546683 C T PAK7 Missense_Mutation p.E447K 0.25 tolerated(0.2) probably_damaging(0.951) TCGA-O2-A52N-01 20 9561383 9561383 G C PAK7 Missense_Mutation p.S133R 0.15 tolerated(0.47) possibly_damaging(0.766) TCGA-O2-A52N-01 21 31988943 31988943 G A KRTAP20-1 Silent p.%3D 0.67 TCGA-O2-A52N-01 21 38997356 38997356 T G KCNJ6 3'UTR 0.27 TCGA-O2-A52N-01 21 45970451 45970451 G T KRTAP10-2 3'UTR 0.54 TCGA-O2-A52N-01 22 17472899 17472899 C G GAB4 Missense_Mutation p.E114D 0.47 tolerated(0.17) possibly_damaging(0.874) TCGA-O2-A52N-01 22 20755577 20755577 G C ZNF74 Silent p.L86L 0.59 TCGA-O2-A52N-01 22 22712471 22712471 A T IGLV1-47 Missense_Mutation p.N72Y 0.15 deleterious_low_confidence(0.02) benign(0.058) TCGA-O2-A52N-01 22 23114887 23114887 G A IGLV3-12 Nonsense_Mutation p.W53* 0.09 TCGA-O2-A52N-01 22 23465397 23465397 C A GNAZ Missense_Mutation p.P283T 0.42 deleterious(0.02) benign(0.109) TCGA-O2-A52N-01 22 28193259 28193259 G - MN1 Frame_Shift_Del p.E1093Nfs*85 0.57 TCGA-O2-A52N-01 22 28196343 28196343 C T MN1 Missense_Mutation p.M63I 0.15 benign(0.004) TCGA-O2-A52N-01 22 31583030 31583030 T C RNF185 Intron 0.57 TCGA-O2-A52N-01 22 32154619 32154619 G T DEPDC5 Missense_Mutation p.S49I 0.14 deleterious(0) probably_damaging(0.998) TCGA-O2-A52N-01 22 33255327 33255327 C T TIMP3 Missense_Mutation p.P200L 0.15 deleterious(0.01) benign(0.084) TCGA-O2-A52N-01 22 37524452 37524452 C T IL2RB Missense_Mutation p.G447D 0.15 tolerated(0.05) benign(0.089) TCGA-O2-A52N-01 22 40061928 40061928 C T CACNA1I Missense_Mutation p.R1341C 0.55 deleterious(0) possibly_damaging(0.898) TCGA-O2-A52N-01 22 41923878 41923878 G A POLR3H 3'UTR 0.07 TCGA-O2-A52N-01 2 100052305 100052305 C T REV1 Missense_Mutation p.D438N 0.48 tolerated(0.05) probably_damaging(0.99) TCGA-O2-A52N-01 2 100210611 100210611 G A AFF3 Silent p.V529V 0.11 TCGA-O2-A52N-01 2 101089991 101089991 G A NMS Missense_Mutation p.R58H 0.31 tolerated(0.31) benign(0.374) TCGA-O2-A52N-01 2 103335447 103335447 C A MFSD9 Missense_Mutation p.W286L 0.35 deleterious(0) possibly_damaging(0.728) TCGA-O2-A52N-01 2 107042486 107042486 A G RGPD3 Silent p.Y888Y 0.08 TCGA-O2-A52N-01 2 112779045 112779045 A T MERTK Nonsense_Mutation p.K746* 0.27 TCGA-O2-A52N-01 2 113012484 113012484 C T ZC3H8 Splice_Site p.X25_splice 0.20 TCGA-O2-A52N-01 2 115200297 115200297 G T DPP10 5'UTR 0.49 TCGA-O2-A52N-01 2 116600048 116600048 C G DPP10 3'Flank 0.21 TCGA-O2-A52N-01 2 11943065 11943071 AGCGCGC - LPIN1 Frame_Shift_Del p.R690Lfs*24 0.16 TCGA-O2-A52N-01 2 120858280 120858280 G C EPB41L5 Missense_Mutation p.W409C 0.31 deleterious(0.04) benign(0.049) TCGA-O2-A52N-01 2 128622564 128622564 T A AMMECR1L 3'UTR 0.38 TCGA-O2-A52N-01 2 130930851 130930851 C G SMPD4 Splice_Site p.X154_splice 0.38 TCGA-O2-A52N-01 2 132021077 132021077 G T POTEE Silent p.V683V 0.27 TCGA-O2-A52N-01 2 138771446 138771446 G T HNMT Missense_Mutation p.D209Y 0.34 deleterious(0) possibly_damaging(0.536) TCGA-O2-A52N-01 2 139428905 139428905 G A NXPH2 Missense_Mutation p.L128F 0.47 deleterious(0) probably_damaging(0.987) TCGA-O2-A52N-01 2 141130623 141130623 G T LRP1B Silent p.G3574G 0.28 TCGA-O2-A52N-01 2 144381791 144381791 C A ARHGAP15 Missense_Mutation p.P365T 0.21 deleterious(0) probably_damaging(1) TCGA-O2-A52N-01 2 148653872 148653872 G T ACVR2A Missense_Mutation p.A20S 0.16 tolerated(0.51) benign(0.026) TCGA-O2-A52N-01 2 152370112 152370112 A C NEB Silent p.A7741A 0.35 TCGA-O2-A52N-01 2 163361032 163361032 G T KCNH7 Nonsense_Mutation p.S350* 0.16 TCGA-O2-A52N-01 2 167760015 167760015 C G XIRP2 Missense_Mutation p.S8C 0.21 probably_damaging(0.998) TCGA-O2-A52N-01 2 169851900 169851900 A G ABCB11 Silent p.F190F 0.39 TCGA-O2-A52N-01 2 170103280 170103280 T C LRP2 Missense_Mutation p.Y1042C 0.38 possibly_damaging(0.84) TCGA-O2-A52N-01 2 173891947 173891947 C T RAPGEF4 Missense_Mutation p.R840C 0.06 deleterious(0) probably_damaging(0.998) TCGA-O2-A52N-01 2 179226462 179226462 C A OSBPL6 Missense_Mutation p.L428M 0.22 tolerated(0.06) benign(0.168) TCGA-O2-A52N-01 2 179391691 179391691 T A TTN 3'UTR 0.51 TCGA-O2-A52N-01 2 179396084 179396084 C T TTN Missense_Mutation p.M35086I 0.18 TCGA-O2-A52N-01 2 179396087 179396087 C T TTN Silent p.Q35085Q 0.18 TCGA-O2-A52N-01 2 179442358 179442358 G C TTN Missense_Mutation p.T22932R 0.21 TCGA-O2-A52N-01 2 179442525 179442525 A G TTN Silent p.Y22876Y 0.60 TCGA-O2-A52N-01 2 179576074 179576074 G C TTN Missense_Mutation p.Q9297E 0.61 TCGA-O2-A52N-01 2 179587084 179587084 T G TTN Missense_Mutation p.K7477T 0.09 TCGA-O2-A52N-01 2 179604306 179604306 C A TTN Missense_Mutation p.V4552F 0.57 TCGA-O2-A52N-01 2 185801934 185801934 A G ZNF804A Missense_Mutation p.Q604R 0.38 tolerated(0.31) benign(0.001) TCGA-O2-A52N-01 2 196689051 196689051 A T DNAH7 Nonsense_Mutation p.Y3073* 0.16 TCGA-O2-A52N-01 2 197183477 197183477 G A HECW2 Missense_Mutation p.P713S 0.29 tolerated_low_confidence(0.11) benign(0.003) TCGA-O2-A52N-01 2 198949856 198949856 G T PLCL1 Missense_Mutation p.V539L 0.15 tolerated(0.92) benign(0.023) TCGA-O2-A52N-01 2 207174216 207174216 A G ZDBF2 Missense_Mutation p.D1655G 0.16 tolerated(0.18) possibly_damaging(0.539) TCGA-O2-A52N-01 2 220111465 220111465 A G STK16 Missense_Mutation p.D58G 0.26 tolerated(0.15) possibly_damaging(0.5) TCGA-O2-A52N-01 2 220283547 220283547 C G DES Missense_Mutation p.N121K 0.45 deleterious(0.01) possibly_damaging(0.507) TCGA-O2-A52N-01 2 220347900 220347900 G T SPEG Missense_Mutation p.W1905C 0.41 probably_damaging(0.959) TCGA-O2-A52N-01 2 227919361 227919361 C T COL4A4 Missense_Mutation p.E937K 0.42 unknown(0) TCGA-O2-A52N-01 2 232373785 232373785 T A LINC00471 RNA 0.16 TCGA-O2-A52N-01 2 238005478 238005478 G T COPS8 Silent p.L172L 0.07 TCGA-O2-A52N-01 2 238005479 238005479 G T COPS8 Missense_Mutation p.D173Y 0.06 deleterious(0.01) benign(0.119) TCGA-O2-A52N-01 2 27706220 27706220 G A IFT172 Missense_Mutation p.S169F 0.65 deleterious(0.02) probably_damaging(0.994) TCGA-O2-A52N-01 2 32756424 32756424 C G BIRC6 Missense_Mutation p.H4033D 0.30 possibly_damaging(0.792) TCGA-O2-A52N-01 2 3428377 3428377 C G TRAPPC12 Missense_Mutation p.L454V 0.60 deleterious(0.03) possibly_damaging(0.715) TCGA-O2-A52N-01 2 43798989 43798989 T A THADA Missense_Mutation p.T641S 0.56 deleterious(0.03) benign(0.04) TCGA-O2-A52N-01 2 49190933 49190933 C T FSHR Missense_Mutation p.D343N 0.55 tolerated(0.13) benign(0.002) TCGA-O2-A52N-01 2 49295430 49295430 C G FSHR Splice_Site p.X51_splice 0.61 TCGA-O2-A52N-01 2 54001280 54001280 G A CHAC2 Missense_Mutation p.G58E 0.14 tolerated(0.21) benign(0.01) TCGA-O2-A52N-01 2 55467248 55467248 C G MTIF2 Missense_Mutation p.G590A 0.13 deleterious(0.02) benign(0.279) TCGA-O2-A52N-01 2 66670130 66670130 T A MEIS1 Missense_Mutation p.S194T 0.15 tolerated(0.29) benign(0.199) TCGA-O2-A52N-01 2 73518613 73518613 G T EGR4 Nonsense_Mutation p.S581* 0.48 TCGA-O2-A52N-01 2 88472650 88472650 C T THNSL2 5'UTR 0.31 TCGA-O2-A52N-01 2 90122000 90122000 C A IGKV1D-17 Missense_Mutation p.A73E 0.51 deleterious(0.02) possibly_damaging(0.463) TCGA-O2-A52N-01 2 96858924 96858924 G C STARD7 Intron 0.42 TCGA-O2-A52N-01 2 97164172 97164172 C T NEURL3 RNA 0.06 TCGA-O2-A52N-01 2 98354224 98354224 G A ZAP70 Missense_Mutation p.R496H 0.20 tolerated(0.1) probably_damaging(0.953) TCGA-O2-A52N-01 2 98928898 98928898 C A VWA3B 3'UTR 0.30 TCGA-O2-A52N-01 2 99688259 99688259 C A TSGA10 Missense_Mutation p.E339D 0.49 deleterious(0.01) probably_damaging(0.998) TCGA-O2-A52N-01 3 100962659 100962659 G A IMPG2 Missense_Mutation p.S839L 0.18 deleterious(0) probably_damaging(0.98) TCGA-O2-A52N-01 3 108117661 108117661 G C MYH15 Missense_Mutation p.S1672R 0.54 tolerated(0.06) probably_damaging(0.999) TCGA-O2-A52N-01 3 113619987 113619987 A T GRAMD1C Missense_Mutation p.Q217L 0.51 tolerated(0.15) benign(0.005) TCGA-O2-A52N-01 3 119336897 119336897 G C PLA1A Missense_Mutation p.R262S 0.36 deleterious(0) probably_damaging(1) TCGA-O2-A52N-01 3 121508936 121508936 G A IQCB1 Silent p.L371L 0.38 TCGA-O2-A52N-01 3 122645497 122645497 A G SEMA5B Missense_Mutation p.I347T 0.38 tolerated(0.22) probably_damaging(0.948) TCGA-O2-A52N-01 3 127646700 127646700 T C KBTBD12 Silent p.Y388Y 0.40 TCGA-O2-A52N-01 3 128181528 128181528 C G DNAJB8 Missense_Mutation p.E187D 0.43 deleterious(0) benign(0.437) TCGA-O2-A52N-01 3 129034109 129034109 T C H1FX Missense_Mutation p.K213E 0.18 deleterious_low_confidence(0) unknown(0) TCGA-O2-A52N-01 3 132427079 132427079 C A NPHP3 Nonsense_Mutation p.E381* 0.29 TCGA-O2-A52N-01 3 133553461 133553461 G C RAB6B Missense_Mutation p.L174V 0.12 deleterious(0) benign(0.057) TCGA-O2-A52N-01 3 137717716 137717716 C A CLDN18 Silent p.A2A 0.34 TCGA-O2-A52N-01 3 139094358 139094358 G A COPB2 Silent p.Y201Y 0.32 TCGA-O2-A52N-01 3 140281686 140281686 T A CLSTN2 Missense_Mutation p.L749Q 0.21 deleterious(0) probably_damaging(0.992) TCGA-O2-A52N-01 3 140998304 140998304 A T ACPL2 Missense_Mutation p.K108I 0.32 deleterious(0) probably_damaging(0.932) TCGA-O2-A52N-01 3 145839026 145839026 G A PLOD2 Nonsense_Mutation p.Q71* 0.09 TCGA-O2-A52N-01 3 150398629 150398629 G A FAM194A Missense_Mutation p.A324V 0.36 tolerated(0.16) benign(0.146) TCGA-O2-A52N-01 3 150931428 150931428 G T P2RY14 Nonsense_Mutation p.S226* 0.09 TCGA-O2-A52N-01 3 155311744 155311744 C G PLCH1 Missense_Mutation p.Q140H 0.13 deleterious(0) probably_damaging(0.981) TCGA-O2-A52N-01 3 167031793 167031793 G T ZBBX Missense_Mutation p.N462K 0.14 tolerated(0.1) benign(0.311) TCGA-O2-A52N-01 3 180397272 180397272 A G CCDC39 5'UTR 0.40 TCGA-O2-A52N-01 3 184104402 184104402 C T CHRD Silent p.L685L 0.11 TCGA-O2-A52N-01 3 186006592 186006592 A T DGKG Missense_Mutation p.S151T 0.38 tolerated(0.5) benign(0.002) TCGA-O2-A52N-01 3 186299845 186299845 G T DNAJB11 Nonsense_Mutation p.E221* 0.41 TCGA-O2-A52N-01 3 193176894 193176894 G A ATP13A4 Silent p.L550L 0.30 TCGA-O2-A52N-01 3 196434703 196434703 C G CEP19 Missense_Mutation p.E75Q 0.12 tolerated(0.22) benign(0.02) TCGA-O2-A52N-01 3 196792256 196792256 C A DLG1 Missense_Mutation p.R788I 0.11 deleterious(0) probably_damaging(0.958) TCGA-O2-A52N-01 3 35763217 35763217 C G ARPP21 Silent p.R338R 0.53 TCGA-O2-A52N-01 3 37100310 37100310 C T LRRFIP2 Missense_Mutation p.G614D 0.52 deleterious(0) probably_damaging(0.98) TCGA-O2-A52N-01 3 55513537 55513537 G C WNT5A Missense_Mutation p.Q66E 0.54 deleterious(0.02) possibly_damaging(0.813) TCGA-O2-A52N-01 3 62751637 62751637 G T CADPS Missense_Mutation p.T155K 0.58 tolerated(0.08) benign(0.403) TCGA-O2-A52N-01 3 73006503 73006503 G T GXYLT2 Nonsense_Mutation p.E326* 0.62 TCGA-O2-A52N-01 3 86115830 86115830 A G CADM2 Missense_Mutation p.N404S 0.43 deleterious(0) possibly_damaging(0.57) TCGA-O2-A52N-01 3 97868784 97868784 A C OR5H14 Missense_Mutation p.L185F 0.15 tolerated(1) benign(0.008) TCGA-O2-A52N-01 3 98251914 98251914 A T GPR15 Missense_Mutation p.H346L 0.14 tolerated(0.26) benign(0.055) TCGA-O2-A52N-01 4 100341897 100341897 T A ADH7 Silent p.S226S 0.28 TCGA-O2-A52N-01 4 107154116 107154116 G T TBCK Missense_Mutation p.P540T 0.34 deleterious(0) probably_damaging(0.945) TCGA-O2-A52N-01 4 107171616 107171616 C T TBCK Missense_Mutation p.S206N 0.26 tolerated(0.83) benign(0.001) TCGA-O2-A52N-01 4 108930982 108930982 A C HADH Missense_Mutation p.K67T 0.35 tolerated(0.39) benign(0.026) TCGA-O2-A52N-01 4 110682847 110682847 C A CFI Missense_Mutation p.G162C 0.28 deleterious(0) probably_damaging(1) TCGA-O2-A52N-01 4 114277387 114277387 C A ANK2 Missense_Mutation p.P2538H 0.30 probably_damaging(1) TCGA-O2-A52N-01 4 123850218 123850218 A T SPATA5 Silent p.A104A 0.18 TCGA-O2-A52N-01 4 128863300 128863300 A G MFSD8 Silent p.V151V 0.12 TCGA-O2-A52N-01 4 151827544 151827544 C A LRBA Missense_Mutation p.A503S 0.26 tolerated(0.64) benign(0.021) TCGA-O2-A52N-01 4 154702645 154702646 CT - SFRP2 Frame_Shift_Del p.E282Vfs*19 0.28 TCGA-O2-A52N-01 4 15530317 15530317 A G CC2D2A Silent p.Q478Q 0.21 TCGA-O2-A52N-01 4 155718046 155718046 C A RBM46 Missense_Mutation p.P48T 0.39 deleterious(0) probably_damaging(0.999) TCGA-O2-A52N-01 4 165962066 165962066 C T TRIM60 Missense_Mutation p.P281L 0.09 tolerated(0.12) benign(0.017) TCGA-O2-A52N-01 4 175439214 175439214 C A HPGD Missense_Mutation p.V78F 0.18 deleterious(0) possibly_damaging(0.907) TCGA-O2-A52N-01 4 17819599 17819599 G T NCAPG Missense_Mutation p.A336S 0.40 tolerated(0.21) benign(0.046) TCGA-O2-A52N-01 4 185689482 185689482 C G ACSL1 Silent p.R372R 0.09 TCGA-O2-A52N-01 4 186180203 186180203 A T SNX25 Missense_Mutation p.K75I 0.29 deleterious(0) probably_damaging(0.995) TCGA-O2-A52N-01 4 187518844 187518844 C A FAT1 Missense_Mutation p.R4120S 0.12 benign(0.297) TCGA-O2-A52N-01 4 187525132 187525132 C A FAT1 Splice_Site p.X3517_splice 0.15 TCGA-O2-A52N-01 4 26483275 26483275 C A CCKAR Silent p.S424S 0.27 TCGA-O2-A52N-01 4 30921799 30921799 G A PCDH7 Missense_Mutation p.V1067I 0.13 tolerated(0.24) probably_damaging(0.957) TCGA-O2-A52N-01 4 39304480 39304480 C A RFC1 Silent p.L740L 0.36 TCGA-O2-A52N-01 4 47405637 47405637 G TT GABRB1 Frame_Shift_Ins p.L248Ffs*23 0.17 TCGA-O2-A52N-01 4 47864860 47864860 T C NFXL1 Intron 0.23 TCGA-O2-A52N-01 4 48580997 48580997 C A FRYL Missense_Mutation p.D841Y 0.24 deleterious(0) probably_damaging(0.974) TCGA-O2-A52N-01 4 69796430 69796430 C G UGT2A3 Missense_Mutation p.E380Q 0.10 deleterious(0) probably_damaging(1) TCGA-O2-A52N-01 4 71114719 71114719 A T CSN3 Missense_Mutation p.H31L 0.30 tolerated(0.65) benign(0.001) TCGA-O2-A52N-01 4 76525554 76525554 C A CDKL2 Splice_Site p.X266_splice 0.40 TCGA-O2-A52N-01 4 76817467 76817467 G A PPEF2 Silent p.G4G 0.35 TCGA-O2-A52N-01 4 79516982 79516982 C A ANXA3 Missense_Mutation p.T192K 0.17 deleterious(0.01) probably_damaging(0.917) TCGA-O2-A52N-01 4 80898847 80898847 A C ANTXR2 Silent p.L452L 0.33 TCGA-O2-A52N-01 4 8221087 8221087 A C SH3TC1 Silent p.A314A 0.44 TCGA-O2-A52N-01 4 84337901 84337901 T C HELQ Missense_Mutation p.I1061V 0.21 deleterious(0) benign(0.219) TCGA-O2-A52N-01 4 85654623 85654623 C A WDFY3 Missense_Mutation p.C2378F 0.32 tolerated(0.16) benign(0.106) TCGA-O2-A52N-01 4 87023136 87023136 T C MAPK10 Missense_Mutation p.M159V 0.27 tolerated(0.05) benign(0.406) TCGA-O2-A52N-01 4 87730997 87730997 G T PTPN13 Missense_Mutation p.D2392Y 0.33 deleterious(0.02) probably_damaging(0.933) TCGA-O2-A52N-01 4 96069948 96069948 C A BMPR1B Missense_Mutation p.R406S 0.29 deleterious(0.03) probably_damaging(1) TCGA-O2-A52N-01 5 112176160 112176160 G T APC Missense_Mutation p.R1623S 0.31 probably_damaging(0.997) TCGA-O2-A52N-01 5 113699621 113699621 G C KCNN2 Missense_Mutation p.A169P 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-O2-A52N-01 5 114879109 114879109 T C FEM1C Missense_Mutation p.K28E 0.41 tolerated(0.41) benign(0.027) TCGA-O2-A52N-01 5 1222095 1222095 G T SLC6A19 3'UTR 0.23 TCGA-O2-A52N-01 5 137534330 137534330 C A CDC23 Missense_Mutation p.V266F 0.17 tolerated(0.06) benign(0.042) TCGA-O2-A52N-01 5 13820507 13820507 G - DNAH5 Frame_Shift_Del p.S2264Vfs*12 0.29 TCGA-O2-A52N-01 5 139907503 139907503 G T ANKHD1 Missense_Mutation p.M1711I 0.22 probably_damaging(0.977) TCGA-O2-A52N-01 5 140166179 140166179 T A PCDHA1 Missense_Mutation p.C102S 0.16 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-O2-A52N-01 5 140166180 140166180 G T PCDHA1 Missense_Mutation p.C102F 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-O2-A52N-01 5 140203049 140203049 G T PCDHA5 Silent p.A563A 0.22 TCGA-O2-A52N-01 5 140215906 140215906 C T PCDHA7 Silent p.R646R 0.44 TCGA-O2-A52N-01 5 140235806 140235806 T C PCDHA10 Missense_Mutation p.L58P 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-O2-A52N-01 5 140255328 140255328 G T PCDHA12 Missense_Mutation p.D91Y 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-O2-A52N-01 5 140362139 140362139 G T PCDHAC1 Missense_Mutation p.A858S 0.22 deleterious(0.03) benign(0.119) TCGA-O2-A52N-01 5 140502923 140502923 C A PCDHB4 Missense_Mutation p.P448H 0.34 deleterious(0) probably_damaging(1) TCGA-O2-A52N-01 5 140503597 140503597 C T PCDHB4 Missense_Mutation p.P673S 0.20 tolerated_low_confidence(0.06) benign(0.178) TCGA-O2-A52N-01 5 140559362 140559362 C G PCDHB8 Missense_Mutation p.P583A 0.08 tolerated_low_confidence(0.71) benign(0.018) TCGA-O2-A52N-01 5 140736377 140736377 G A PCDHGA4 Missense_Mutation p.S537N 0.17 tolerated_low_confidence(0.12) benign(0.417) TCGA-O2-A52N-01 5 149440498 149440498 G T CSF1R Silent p.S632S 0.21 TCGA-O2-A52N-01 5 161324516 161324516 C T GABRA1 3'UTR 0.37 TCGA-O2-A52N-01 5 167489225 167489225 C G TENM2 Silent p.L490L 0.29 TCGA-O2-A52N-01 5 180219557 180219557 C T MGAT1 Missense_Mutation p.V139I 0.35 possibly_damaging(0.684) TCGA-O2-A52N-01 5 19473437 19473437 C A CDH18 Silent p.T757T 0.38 TCGA-O2-A52N-01 5 19520768 19520768 G T CDH18 Missense_Mutation p.Q504K 0.29 tolerated(0.07) benign(0.004) TCGA-O2-A52N-01 5 19612668 19612668 C A CDH18 Missense_Mutation p.R229I 0.21 deleterious(0) possibly_damaging(0.585) TCGA-O2-A52N-01 5 31317592 31317592 C A CDH6 Missense_Mutation p.D541E 0.25 deleterious(0) possibly_damaging(0.63) TCGA-O2-A52N-01 5 32780905 32780905 G T NPR3 Nonsense_Mutation p.E425* 0.17 TCGA-O2-A52N-01 5 35991248 35991248 C A UGT3A1 Splice_Site p.X32_splice 0.23 TCGA-O2-A52N-01 5 41000364 41000364 T A MROH2B Silent p.L1480L 0.16 TCGA-O2-A52N-01 5 5237087 5237087 G T ADAMTS16 Missense_Mutation p.D677Y 0.23 deleterious(0.02) possibly_damaging(0.764) TCGA-O2-A52N-01 5 6749685 6749685 C T PAPD7 Silent p.I284I 0.12 TCGA-O2-A52N-01 5 75858353 75858353 T C IQGAP2 Silent p.Y93Y 0.40 TCGA-O2-A52N-01 5 79837702 79837702 C T FAM151B 3'UTR 0.22 TCGA-O2-A52N-01 5 80109489 80109489 C T MSH3 Silent p.I914I 0.24 TCGA-O2-A52N-01 5 89757010 89757010 C G MBLAC2 Missense_Mutation p.V272L 0.23 tolerated(0.73) benign(0.001) TCGA-O2-A52N-01 5 90119349 90119349 G T GPR98 Missense_Mutation p.G5435V 0.11 probably_damaging(0.972) TCGA-O2-A52N-01 5 98228322 98228322 C T CHD1 Missense_Mutation p.R696H 0.25 deleterious(0) probably_damaging(1) TCGA-O2-A52N-01 6 101306925 101306925 T A ASCC3 Intron 0.45 TCGA-O2-A52N-01 6 102372579 102372579 G C GRIK2 Missense_Mutation p.A618P 0.52 deleterious(0.02) probably_damaging(0.925) TCGA-O2-A52N-01 6 108067928 108067928 A T SCML4 Missense_Mutation p.L151Q 0.50 deleterious(0.02) possibly_damaging(0.566) TCGA-O2-A52N-01 6 10882071 10882071 G A GCM2 5'UTR 0.46 TCGA-O2-A52N-01 6 109215669 109215669 G T ARMC2 Splice_Site p.X224_splice 0.51 TCGA-O2-A52N-01 6 109818718 109818718 A G AK9 Silent p.H1755H 0.54 TCGA-O2-A52N-01 6 145021258 145021258 G A UTRN Missense_Mutation p.R2563K 0.21 tolerated(0.08) benign(0.012) TCGA-O2-A52N-01 6 145103255 145103255 G T UTRN Missense_Mutation p.D2944Y 0.64 deleterious(0) probably_damaging(1) TCGA-O2-A52N-01 6 146720057 146720057 C A GRM1 Silent p.R628R 0.55 TCGA-O2-A52N-01 6 158093891 158093891 G T ZDHHC14 Missense_Mutation p.A402S 0.59 tolerated_low_confidence(0.29) benign(0.007) TCGA-O2-A52N-01 6 167550041 167550041 C G CCR6 Missense_Mutation p.T108S 0.11 tolerated(0.72) benign(0.006) TCGA-O2-A52N-01 6 24650911 24650911 T C TDP2 3'UTR 0.30 TCGA-O2-A52N-01 6 27791983 27791983 C T HIST1H4J Silent p.I27I 0.36 TCGA-O2-A52N-01 6 27799269 27799269 T C HIST1H4K Missense_Mutation p.K13E 0.42 tolerated_low_confidence(0.07) benign(0.033) TCGA-O2-A52N-01 6 29638515 29638515 C T MOG Intron 0.26 TCGA-O2-A52N-01 6 31600073 31600073 C G PRRC2A Missense_Mutation p.P1208R 0.53 unknown(0) TCGA-O2-A52N-01 6 32085720 32085720 G C ATF6B Missense_Mutation p.P447R 0.44 tolerated(0.14) benign(0.005) TCGA-O2-A52N-01 6 32783011 32783011 G C HLA-DOB Missense_Mutation p.I57M 0.59 deleterious(0.01) possibly_damaging(0.78) TCGA-O2-A52N-01 6 33638553 33638553 G T ITPR3 Silent p.V849V 0.50 TCGA-O2-A52N-01 6 36294351 36294351 G C C6orf222 Silent p.P324P 0.42 TCGA-O2-A52N-01 6 42631003 42631003 G C UBR2 Missense_Mutation p.D1182H 0.30 deleterious(0) possibly_damaging(0.832) TCGA-O2-A52N-01 6 49986694 49986694 T A DEFB110 Missense_Mutation p.Q67L 0.42 deleterious_low_confidence(0.02) benign(0.005) TCGA-O2-A52N-01 6 49986729 49986729 G T DEFB110 Nonsense_Mutation p.Y55* 0.37 TCGA-O2-A52N-01 6 52895940 52895940 T C ICK Missense_Mutation p.N94S 0.25 tolerated(0.11) benign(0.014) TCGA-O2-A52N-01 6 70065722 70065722 G T BAI3 Nonsense_Mutation p.E1189* 0.15 TCGA-O2-A52N-01 6 72955530 72955530 G T RIMS1 Silent p.R698R 0.39 TCGA-O2-A52N-01 6 7585442 7585446 GCTTC - DSP Frame_Shift_Del p.R2649Sfs*31 0.45 TCGA-O2-A52N-01 6 80746316 80746316 G A TTK Silent p.Q683Q 0.17 TCGA-O2-A52N-01 6 88218264 88218264 A G SLC35A1 Missense_Mutation p.K234R 0.62 tolerated(0.44) benign(0.004) TCGA-O2-A52N-01 6 89888701 89888701 C A GABRR1 Missense_Mutation p.D410Y 0.58 deleterious(0.03) benign(0.166) TCGA-O2-A52N-01 7 103124106 103124106 A T RELN Missense_Mutation p.V3392D 0.41 deleterious(0) possibly_damaging(0.772) TCGA-O2-A52N-01 7 11501693 11501693 C G THSD7A Missense_Mutation p.D816H 0.12 deleterious(0) possibly_damaging(0.841) TCGA-O2-A52N-01 7 116759645 116759645 G A ST7 Missense_Mutation p.G89R 0.55 deleterious(0) probably_damaging(0.96) TCGA-O2-A52N-01 7 127240284 127240284 G T FSCN3 Missense_Mutation p.G443V 0.16 deleterious(0) possibly_damaging(0.475) TCGA-O2-A52N-01 7 127721547 127721547 G T SND1 Nonsense_Mutation p.E702* 0.16 TCGA-O2-A52N-01 7 128493083 128493083 C T FLNC Missense_Mutation p.A2069V 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-O2-A52N-01 7 132192808 132192808 C T PLXNA4 Silent p.A215A 0.13 TCGA-O2-A52N-01 7 137569742 137569742 C A CREB3L2 Silent p.V423V 0.33 TCGA-O2-A52N-01 7 138310791 138310791 C A SVOPL Missense_Mutation p.G396C 0.30 tolerated(0.09) probably_damaging(0.999) TCGA-O2-A52N-01 7 140255437 140255437 C A DENND2A Missense_Mutation p.R679M 0.20 deleterious(0) possibly_damaging(0.704) TCGA-O2-A52N-01 7 143053618 143053618 G A FAM131B 3'UTR 0.19 TCGA-O2-A52N-01 7 143417203 143417203 G C FAM115C Missense_Mutation p.V351L 0.46 deleterious(0) probably_damaging(0.997) TCGA-O2-A52N-01 7 148802654 148802654 G A ZNF425 Silent p.D103D 0.24 TCGA-O2-A52N-01 7 154143385 154143385 C A DPP6 Silent p.I110I 0.48 TCGA-O2-A52N-01 7 2649813 2649813 C T IQCE 3'UTR 0.38 TCGA-O2-A52N-01 7 36423524 36423524 G T KIAA0895 Missense_Mutation p.P41Q 0.37 deleterious_low_confidence(0.02) benign(0.02) TCGA-O2-A52N-01 7 37780327 37780327 T G GPR141 Missense_Mutation p.V111G 0.11 deleterious(0) possibly_damaging(0.719) TCGA-O2-A52N-01 7 45930257 45930257 G C IGFBP1 Missense_Mutation p.A154P 0.07 tolerated(0.13) probably_damaging(0.983) TCGA-O2-A52N-01 7 48016368 48016368 A G HUS1 Silent p.L142L 0.07 TCGA-O2-A52N-01 7 53104260 53104260 C T POM121L12 3'UTR 0.04 TCGA-O2-A52N-01 7 57188411 57188411 T C ZNF479 Silent p.G237G 0.05 TCGA-O2-A52N-01 7 57188850 57188850 G T ZNF479 Missense_Mutation p.S91Y 0.72 deleterious(0.04) probably_damaging(0.91) TCGA-O2-A52N-01 7 57522776 57522776 C A ZNF716 Intron 0.09 TCGA-O2-A52N-01 7 76239433 76239433 A G POMZP3 3'UTR 0.44 TCGA-O2-A52N-01 7 99332675 99332675 G T CYP3A7 Silent p.L14L 0.32 TCGA-O2-A52N-01 7 99778125 99778125 C A STAG3 5'UTR 0.44 TCGA-O2-A52N-01 8 103287815 103287815 T A UBR5 Missense_Mutation p.K2221N 0.50 deleterious(0) possibly_damaging(0.885) TCGA-O2-A52N-01 8 104444949 104444949 A T DCAF13 Silent p.T407T 0.36 TCGA-O2-A52N-01 8 105503083 105503083 A T LRP12 Missense_Mutation p.S800T 0.49 tolerated_low_confidence(0.25) benign(0.031) TCGA-O2-A52N-01 8 106814402 106814402 C A ZFPM2 Silent p.R698R 0.34 TCGA-O2-A52N-01 8 109796951 109796951 C A TMEM74 Missense_Mutation p.S126I 0.45 deleterious(0.05) benign(0.1) TCGA-O2-A52N-01 8 113237018 113237018 C A CSMD3 Silent p.T3702T 0.19 TCGA-O2-A52N-01 8 113988133 113988133 G A CSMD3 Silent p.T425T 0.20 TCGA-O2-A52N-01 8 124382208 124382208 C G ATAD2 Missense_Mutation p.D262H 0.05 deleterious(0.03) benign(0.063) TCGA-O2-A52N-01 8 139151250 139151250 A G FAM135B Missense_Mutation p.Y1294H 0.15 deleterious(0) probably_damaging(1) TCGA-O2-A52N-01 8 139601516 139601516 C A COL22A1 Missense_Mutation p.G1621C 0.37 unknown(0) TCGA-O2-A52N-01 8 145114528 145114528 G C OPLAH Missense_Mutation p.Q113E 0.12 deleterious(0.01) possibly_damaging(0.85) TCGA-O2-A52N-01 8 145639387 145639387 G T SLC39A4 Missense_Mutation p.F414L 0.33 deleterious(0) probably_damaging(0.972) TCGA-O2-A52N-01 8 24359036 24359036 G T ADAM7 Missense_Mutation p.D719Y 0.26 deleterious(0) probably_damaging(0.959) TCGA-O2-A52N-01 8 39044503 39044503 T C ADAM32 Missense_Mutation p.Y331H 0.45 deleterious(0.01) probably_damaging(0.997) TCGA-O2-A52N-01 8 51617298 51617298 G C SNTG1 Missense_Mutation p.V393L 0.13 deleterious(0) possibly_damaging(0.882) TCGA-O2-A52N-01 8 52284510 52284510 G T PXDNL Missense_Mutation p.A1275E 0.16 deleterious(0) probably_damaging(0.951) TCGA-O2-A52N-01 8 52733150 52733150 T G PCMTD1 Missense_Mutation p.K279Q 0.09 tolerated(0.16) benign(0.119) TCGA-O2-A52N-01 8 67012222 67012222 C A DNAJC5B Missense_Mutation p.Q186K 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.722) TCGA-O2-A52N-01 8 67062082 67062082 T C TRIM55 Missense_Mutation p.M269T 0.45 deleterious(0.01) possibly_damaging(0.722) TCGA-O2-A52N-01 8 67926700 67926700 C A PPP1R42 Missense_Mutation p.C86F 0.42 tolerated(0.16) benign(0.047) TCGA-O2-A52N-01 8 72987630 72987630 C A TRPA1 Silent p.L5L 0.39 TCGA-O2-A52N-01 8 77620018 77620018 A C ZFHX4 Missense_Mutation p.Y943S 0.55 possibly_damaging(0.607) TCGA-O2-A52N-01 8 77766175 77766175 G T ZFHX4 Missense_Mutation p.D2340Y 0.12 probably_damaging(0.987) TCGA-O2-A52N-01 8 77767599 77767599 C A ZFHX4 Silent p.T2814T 0.46 TCGA-O2-A52N-01 8 77776277 77776277 C G ZFHX4 Missense_Mutation p.P3443A 0.43 probably_damaging(0.991) TCGA-O2-A52N-01 8 86157923 86157923 G T CA13 5'UTR 0.60 TCGA-O2-A52N-01 8 99101862 99101862 A T C8orf47 Missense_Mutation p.Q206L 0.60 deleterious(0.04) benign(0.08) TCGA-O2-A52N-01 9 104499683 104499683 C A GRIN3A Silent p.V193V 0.48 TCGA-O2-A52N-01 9 107266924 107266924 C G OR13F1 Missense_Mutation p.C127W 0.39 deleterious(0) possibly_damaging(0.907) TCGA-O2-A52N-01 9 115449868 115449868 C A INIP Missense_Mutation p.A89S 0.57 tolerated(1) benign(0.117) TCGA-O2-A52N-01 9 121930364 121930364 G C BRINP1 Missense_Mutation p.C428W 0.88 deleterious(0) probably_damaging(0.984) TCGA-O2-A52N-01 9 12821885 12821885 C G LURAP1L 3'UTR 0.62 TCGA-O2-A52N-01 9 13138102 13138102 C T MPDZ Missense_Mutation p.E1352K 0.40 deleterious(0) probably_damaging(0.999) TCGA-O2-A52N-01 9 132854618 132854618 T C GPR107 Missense_Mutation p.F274S 0.17 deleterious(0) benign(0.219) TCGA-O2-A52N-01 9 137704349 137704349 G A COL5A1 Splice_Site p.X1248_splice 0.55 TCGA-O2-A52N-01 9 138439761 138439761 G T OBP2A Missense_Mutation p.D108Y 0.56 deleterious(0) probably_damaging(0.988) TCGA-O2-A52N-01 9 138713348 138713348 G A CAMSAP1 Silent p.P1053P 0.60 TCGA-O2-A52N-01 9 139740828 139740828 A T C9orf172 Missense_Mutation p.E654D 0.63 tolerated(1) benign(0.032) TCGA-O2-A52N-01 9 14722683 14722683 C A CER1 5'UTR 0.60 TCGA-O2-A52N-01 9 35748363 35748363 C G GBA2 Missense_Mutation p.K113N 0.09 tolerated(0.15) benign(0.025) TCGA-O2-A52N-01 9 39117989 39117989 T A CNTNAP3 Intron 0.43 TCGA-O2-A52N-01 9 7174551 7174551 A C KDM4C Splice_Site p.X999_splice 0.09 TCGA-O2-A52N-01 9 85958199 85958199 G A FRMD3 Silent p.Y126Y 0.11 TCGA-O2-A52N-01 X 100611943 100611943 C A BTK Missense_Mutation p.G393V 0.63 deleterious(0) probably_damaging(0.999) TCGA-O2-A52N-01 X 105876249 105876249 G C CXorf57 Missense_Mutation p.K392N 0.70 tolerated(0.05) probably_damaging(0.974) TCGA-O2-A52N-01 X 106397331 106397331 C G NUP62CL Missense_Mutation p.E114Q 0.21 deleterious(0) possibly_damaging(0.823) TCGA-O2-A52N-01 X 117796663 117796663 G T DOCK11 Nonsense_Mutation p.G1662* 0.30 TCGA-O2-A52N-01 X 122319783 122319783 A G GRIA3 Missense_Mutation p.H70R 0.40 tolerated(0.84) benign(0.056) TCGA-O2-A52N-01 X 145075794 145075794 A T MIR890 RNA 0.37 TCGA-O2-A52N-01 X 149924208 149924208 G C MTMR1 Missense_Mutation p.Q568H 0.21 deleterious(0.03) benign(0) TCGA-O2-A52N-01 X 151870067 151870067 G A MAGEA6 Missense_Mutation p.E253K 0.48 deleterious(0.04) possibly_damaging(0.489) TCGA-O2-A52N-01 X 21990068 21990068 G T SMS Missense_Mutation p.S75I 0.36 tolerated(0.1) possibly_damaging(0.465) TCGA-O2-A52N-01 X 44966728 44966728 A T KDM6A Missense_Mutation p.I1318L 0.48 tolerated(0.55) benign(0.004) TCGA-O2-A52N-01 X 48340057 48340057 G A FTSJ1 Silent p.E203E 0.47 TCGA-O2-A52N-01 X 50658810 50658810 T C BMP15 Missense_Mutation p.Y128H 0.42 tolerated(0.07) benign(0.035) TCGA-O2-A52N-01 X 55514038 55514038 G C USP51 Nonsense_Mutation p.Y445* 0.37 TCGA-O2-A52N-01 X 6069506 6069506 A G NLGN4X Translation_Start_Site p.M1? 0.41 deleterious_low_confidence(0) possibly_damaging(0.599) TCGA-O2-A52N-01 X 67937901 67937901 G T STARD8 Missense_Mutation p.G382V 0.42 tolerated(0.12) benign(0.004) TCGA-O2-A52N-01 X 69652170 69652170 G A GDPD2 Missense_Mutation p.D492N 0.04 tolerated(0.24) benign(0.008) TCGA-O2-A52N-01 Y 4967051 4967051 T A PCDH11Y Missense_Mutation p.L478M 0.62 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 10 102566326 102566326 C A PAX2 Missense_Mutation p.D275E 0.19 tolerated(0.17) probably_damaging(0.998) TCGA-O2-A52Q-01 10 102738860 102738860 G A SEMA4G Missense_Mutation p.G272E 0.40 tolerated(0.09) probably_damaging(0.994) TCGA-O2-A52Q-01 10 102987172 102987172 G C LBX1 Missense_Mutation p.S234C 0.12 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-O2-A52Q-01 10 102987522 102987522 C A LBX1 Silent p.G117G 0.15 TCGA-O2-A52Q-01 10 1042198 1042198 C T GTPBP4 Intron 0.53 TCGA-O2-A52Q-01 10 104557813 104557813 G - WBP1L Frame_Shift_Del p.G52Dfs*25 0.26 TCGA-O2-A52Q-01 10 105765710 105765710 G T SLK Nonsense_Mutation p.E841* 0.24 TCGA-O2-A52Q-01 10 108434839 108434839 C A SORCS1 Silent p.L636L 0.33 TCGA-O2-A52Q-01 10 112838876 112838876 G T ADRA2A Silent p.A374A 0.10 TCGA-O2-A52Q-01 10 117308989 117308989 G T ATRNL1 Silent p.L1246L 0.29 TCGA-O2-A52Q-01 10 117704228 117704228 G C ATRNL1 Missense_Mutation p.D1360H 0.19 deleterious(0.01) possibly_damaging(0.721) TCGA-O2-A52Q-01 10 120354565 120354565 C A PRLHR Silent p.V64V 0.23 TCGA-O2-A52Q-01 10 120928696 120928696 G A PRDX3 Missense_Mutation p.S237F 0.05 deleterious(0) probably_damaging(0.948) TCGA-O2-A52Q-01 10 123278284 123278284 C A FGFR2 Silent p.A333A 0.34 TCGA-O2-A52Q-01 10 123970198 123970198 G T TACC2 Silent p.S2086S 0.20 TCGA-O2-A52Q-01 10 124914531 124914531 C A BUB3 Missense_Mutation p.S33Y 0.24 deleterious(0) probably_damaging(0.992) TCGA-O2-A52Q-01 10 125521461 125521461 C A CPXM2 Missense_Mutation p.R568S 0.19 tolerated(0.25) possibly_damaging(0.883) TCGA-O2-A52Q-01 10 129877892 129877892 G T PTPRE Missense_Mutation p.G654V 0.42 deleterious(0) possibly_damaging(0.881) TCGA-O2-A52Q-01 10 133761243 133761243 G A PPP2R2D Missense_Mutation p.E313K 0.46 deleterious(0.01) benign(0.365) TCGA-O2-A52Q-01 10 135370594 135370594 C T SYCE1 Silent p.E147E 0.39 TCGA-O2-A52Q-01 10 135439007 135439007 G T FRG2B Missense_Mutation p.H145N 0.04 tolerated(0.32) benign(0.051) TCGA-O2-A52Q-01 10 15290762 15290762 C T FAM171A1 Silent p.L210L 0.48 TCGA-O2-A52Q-01 10 20466304 20466304 G C PLXDC2 Missense_Mutation p.G343R 0.47 tolerated(0.29) possibly_damaging(0.774) TCGA-O2-A52Q-01 10 20500597 20500597 G A PLXDC2 Splice_Site p.X354_splice 0.61 TCGA-O2-A52Q-01 10 23326257 23326257 C A ARMC3 Missense_Mutation p.A823E 0.52 deleterious(0) probably_damaging(0.991) TCGA-O2-A52Q-01 10 25839938 25839938 C A GPR158 Missense_Mutation p.R480S 0.37 deleterious(0.03) possibly_damaging(0.787) TCGA-O2-A52Q-01 10 25839939 25839939 G T GPR158 Missense_Mutation p.R480L 0.38 deleterious(0) possibly_damaging(0.719) TCGA-O2-A52Q-01 10 30653695 30653695 C A AL161651.1 3'Flank 0.65 TCGA-O2-A52Q-01 10 31138516 31138516 G A ZNF438 Missense_Mutation p.S273L 0.49 deleterious(0) possibly_damaging(0.655) TCGA-O2-A52Q-01 10 38121668 38121668 G A ZNF248 Silent p.L205L 0.14 TCGA-O2-A52Q-01 10 43882166 43882166 G T HNRNPF Nonsense_Mutation p.Y389* 0.13 TCGA-O2-A52Q-01 10 43882167 43882167 T A HNRNPF Missense_Mutation p.Y389F 0.13 deleterious(0) possibly_damaging(0.487) TCGA-O2-A52Q-01 10 43882168 43882168 A C HNRNPF Missense_Mutation p.Y389D 0.14 deleterious(0.03) benign(0.005) TCGA-O2-A52Q-01 10 45644317 45644317 G T RP11-445N18.7 RNA 0.19 TCGA-O2-A52Q-01 10 47087789 47087789 C A NPY4R Missense_Mutation p.L336M 0.14 deleterious(0.03) probably_damaging(0.966) TCGA-O2-A52Q-01 10 50902718 50902718 G A C10orf53 Intron 0.48 TCGA-O2-A52Q-01 10 52575854 52575854 C A A1CF Missense_Mutation p.Q359H 0.17 tolerated(0.56) benign(0.012) TCGA-O2-A52Q-01 10 55582204 55582204 G T PCDH15 Missense_Mutation p.A1763D 0.62 tolerated_low_confidence(0.07) unknown(0) TCGA-O2-A52Q-01 10 63845466 63845466 T A ARID5B Missense_Mutation p.I402N 0.05 deleterious(0) probably_damaging(0.997) TCGA-O2-A52Q-01 10 63850815 63850815 G A ARID5B Silent p.E531E 0.22 TCGA-O2-A52Q-01 10 70644503 70644503 G T STOX1 Missense_Mutation p.W317C 0.34 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 10 71332655 71332655 C T NEUROG3 Missense_Mutation p.A49T 0.32 tolerated(0.48) benign(0.001) TCGA-O2-A52Q-01 10 71877632 71877632 G C AIFM2 Silent p.L184L 0.39 TCGA-O2-A52Q-01 10 73039726 73039726 G T UNC5B Missense_Mutation p.Q76H 0.21 deleterious(0) probably_damaging(0.999) TCGA-O2-A52Q-01 10 73553352 73553352 C A CDH23 5'Flank 0.27 TCGA-O2-A52Q-01 10 78944584 78944584 C T KCNMA1 Silent p.L231L 0.19 TCGA-O2-A52Q-01 10 81072622 81072622 G T ZMIZ1 3'UTR 0.33 TCGA-O2-A52Q-01 10 87373235 87373235 G C GRID1 Missense_Mutation p.L844V 0.36 tolerated(0.09) probably_damaging(0.996) TCGA-O2-A52Q-01 10 94653134 94653134 C T EXOC6 Missense_Mutation p.H44Y 0.09 tolerated(0.16) benign(0.165) TCGA-O2-A52Q-01 10 96098402 96098402 G C NOC3L Missense_Mutation p.A685G 0.16 deleterious(0.01) possibly_damaging(0.777) TCGA-O2-A52Q-01 10 96818226 96818226 T C CYP2C8 Missense_Mutation p.T229A 0.11 tolerated(0.18) benign(0) TCGA-O2-A52Q-01 10 98708774 98708774 G T LCOR 5'UTR 0.38 TCGA-O2-A52Q-01 10 98743434 98743434 G T C10orf12 Nonsense_Mutation p.E763* 0.38 TCGA-O2-A52Q-01 10 99437620 99437620 C A AVPI1 3'UTR 0.39 TCGA-O2-A52Q-01 10 99969088 99969088 C G R3HCC1L Missense_Mutation p.S406C 0.23 tolerated(1) benign(0.001) TCGA-O2-A52Q-01 11 102713269 102713269 T C MMP3 Missense_Mutation p.D131G 0.18 deleterious(0) probably_damaging(0.984) TCGA-O2-A52Q-01 11 103870840 103870840 G A PDGFD Missense_Mutation p.R90W 0.19 tolerated(0.23) probably_damaging(1) TCGA-O2-A52Q-01 11 103870841 103870841 T A PDGFD Silent p.T89T 0.19 TCGA-O2-A52Q-01 11 108196806 108196806 C T ATM Nonsense_Mutation p.Q2277* 0.44 TCGA-O2-A52Q-01 11 111782436 111782436 T G CRYAB Missense_Mutation p.I5L 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-O2-A52Q-01 11 113283381 113283381 G - DRD2 Frame_Shift_Del p.M346Cfs*13 0.08 TCGA-O2-A52Q-01 11 113288824 113288824 C G DRD2 Missense_Mutation p.C107S 0.17 deleterious(0) probably_damaging(0.945) TCGA-O2-A52Q-01 11 113934083 113934083 C A ZBTB16 Missense_Mutation p.L21M 0.17 deleterious(0) probably_damaging(0.997) TCGA-O2-A52Q-01 11 115109292 115109292 C A CADM1 Missense_Mutation p.D118Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-O2-A52Q-01 11 119290876 119290876 C T THY1 Missense_Mutation p.M86I 0.11 tolerated(0.7) benign(0.001) TCGA-O2-A52Q-01 11 120823653 120823653 T C GRIK4 Silent p.C560C 0.18 TCGA-O2-A52Q-01 11 120980081 120980081 C A TECTA Silent p.A120A 0.16 TCGA-O2-A52Q-01 11 123471197 123471197 G T GRAMD1B Missense_Mutation p.A188S 0.48 deleterious(0) benign(0.341) TCGA-O2-A52Q-01 11 123601264 123601264 T G ZNF202 Silent p.P111P 0.36 TCGA-O2-A52Q-01 11 123909200 123909200 G C OR10G7 Missense_Mutation p.P170R 0.29 deleterious(0.02) probably_damaging(0.976) TCGA-O2-A52Q-01 11 124134954 124134954 C A OR8G5 Missense_Mutation p.L78M 0.42 deleterious(0.04) possibly_damaging(0.583) TCGA-O2-A52Q-01 11 124952211 124952211 C A SLC37A2 Silent p.P319P 0.13 TCGA-O2-A52Q-01 11 125617713 125617713 C G PATE1 Missense_Mutation p.F81L 0.08 tolerated(0.08) benign(0.273) TCGA-O2-A52Q-01 11 125871698 125871698 C T CDON Missense_Mutation p.G692S 0.22 tolerated(0.27) benign(0.14) TCGA-O2-A52Q-01 11 128840316 128840316 G A ARHGAP32 Nonsense_Mutation p.Q1584* 0.12 TCGA-O2-A52Q-01 11 130078554 130078554 G C ST14 Silent p.T748T 0.16 TCGA-O2-A52Q-01 11 130343621 130343621 T A ADAMTS15 Missense_Mutation p.C920S 0.16 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 11 132184528 132184528 G T NTM Missense_Mutation p.D289Y 0.23 deleterious(0.01) probably_damaging(1) TCGA-O2-A52Q-01 11 14665682 14665682 G T PDE3B Missense_Mutation p.G21C 0.77 deleterious_low_confidence(0) possibly_damaging(0.548) TCGA-O2-A52Q-01 11 15197430 15197430 G T INSC Missense_Mutation p.G114V 0.37 tolerated(0.31) benign(0.002) TCGA-O2-A52Q-01 11 17531004 17531004 C G USH1C Missense_Mutation p.G638R 0.55 tolerated_low_confidence(0.08) benign(0.092) TCGA-O2-A52Q-01 11 17741297 17741297 G A MYOD1 5'UTR 0.13 TCGA-O2-A52Q-01 11 25004778 25004778 G T LUZP2 Missense_Mutation p.R235L 0.33 tolerated(0.15) benign(0.028) TCGA-O2-A52Q-01 11 30032320 30032320 T G KCNA4 Missense_Mutation p.S636R 0.57 tolerated_low_confidence(0.11) benign(0.198) TCGA-O2-A52Q-01 11 30974069 30974069 G T DCDC1 Missense_Mutation p.H880N 0.62 deleterious(0.02) benign(0.086) TCGA-O2-A52Q-01 11 33631348 33631348 G A KIAA1549L Silent p.L1408L 0.36 TCGA-O2-A52Q-01 11 46407146 46407146 G T CHRM4 Missense_Mutation p.P321H 0.59 tolerated(0.13) possibly_damaging(0.663) TCGA-O2-A52Q-01 11 4843608 4843608 G A OR51F2 Silent p.Q331Q 0.62 TCGA-O2-A52Q-01 11 49974764 49974765 - T OR4C13 Frame_Shift_Ins p.P264Lfs*3 0.17 TCGA-O2-A52Q-01 11 51515878 51515879 - A OR4C46 Frame_Shift_Ins p.N200Kfs*28 0.15 TCGA-O2-A52Q-01 11 55063076 55063076 T A TRIM51HP RNA 0.40 TCGA-O2-A52Q-01 11 55110829 55110829 C T OR4A16 Silent p.P51P 0.34 TCGA-O2-A52Q-01 11 5530149 5530149 G T UBQLN3 Missense_Mutation p.P214T 0.43 deleterious(0.02) probably_damaging(1) TCGA-O2-A52Q-01 11 55432871 55432871 C A OR4C6 Missense_Mutation p.P77T 0.22 deleterious_low_confidence(0) possibly_damaging(0.856) TCGA-O2-A52Q-01 11 55432872 55432872 C A OR4C6 Missense_Mutation p.P77H 0.22 deleterious_low_confidence(0.01) benign(0.172) TCGA-O2-A52Q-01 11 55594930 55594930 C A OR5L2 Missense_Mutation p.P79Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-O2-A52Q-01 11 55653248 55653248 G T TRIM51 Missense_Mutation p.C115F 0.39 deleterious(0.03) probably_damaging(0.966) TCGA-O2-A52Q-01 11 55735920 55735920 C G OR10AG1 Missense_Mutation p.G7A 0.35 deleterious(0.01) possibly_damaging(0.484) TCGA-O2-A52Q-01 11 55761192 55761192 C A OR5F1 Missense_Mutation p.V304L 0.21 tolerated(0.29) benign(0.004) TCGA-O2-A52Q-01 11 55873256 55873256 G T OR8H2 Missense_Mutation p.L246F 0.32 deleterious(0) probably_damaging(0.97) TCGA-O2-A52Q-01 11 55999730 55999730 A T OR5T2 Missense_Mutation p.M311K 0.41 tolerated(1) benign(0.26) TCGA-O2-A52Q-01 11 56230862 56230862 C A OR5M9 Missense_Mutation p.D6Y 0.12 deleterious(0.05) benign(0.212) TCGA-O2-A52Q-01 11 56380912 56380912 G T OR5M1 Missense_Mutation p.L23I 0.18 deleterious(0.01) possibly_damaging(0.493) TCGA-O2-A52Q-01 11 56510526 56510526 G T OR9G4 Silent p.S254S 0.27 TCGA-O2-A52Q-01 11 5809408 5809408 G T OR52N1 Silent p.I213I 0.45 TCGA-O2-A52Q-01 11 59423436 59423436 C T PATL1 Missense_Mutation p.G269E 0.36 tolerated(0.14) possibly_damaging(0.575) TCGA-O2-A52Q-01 11 59612974 59612974 A T GIF 5'UTR 0.37 TCGA-O2-A52Q-01 11 59947376 59947376 G - MS4A6A Frame_Shift_Del p.F99Sfs*8 0.21 TCGA-O2-A52Q-01 11 60157002 60157002 C T MS4A7 Missense_Mutation p.P160L 0.15 tolerated(0.08) possibly_damaging(0.824) TCGA-O2-A52Q-01 11 60230559 60230559 G T MS4A1 Missense_Mutation p.V82L 0.23 tolerated(0.19) benign(0.046) TCGA-O2-A52Q-01 11 60637343 60637343 C A ZP1 Missense_Mutation p.H218N 0.33 tolerated(0.31) benign(0.034) TCGA-O2-A52Q-01 11 61563595 61563595 G C FEN1 Missense_Mutation p.K254N 0.14 deleterious(0.03) benign(0.025) TCGA-O2-A52Q-01 11 62294995 62294995 G A AHNAK Silent p.P2298P 0.31 TCGA-O2-A52Q-01 11 63960577 63960577 A T STIP1 Nonsense_Mutation p.K13* 0.17 TCGA-O2-A52Q-01 11 64397959 64397959 T C NRXN2 Silent p.K1224K 0.30 TCGA-O2-A52Q-01 11 65273050 65273050 G C MALAT1 RNA 0.17 TCGA-O2-A52Q-01 11 65273881 65273881 G C MALAT1 RNA 0.30 TCGA-O2-A52Q-01 11 65765875 65765875 G A EIF1AD 3'UTR 0.38 TCGA-O2-A52Q-01 11 66108719 66108719 C A BRMS1 Missense_Mutation p.G106W 0.42 deleterious(0) probably_damaging(0.981) TCGA-O2-A52Q-01 11 66472529 66472529 C A SPTBN2 Missense_Mutation p.A740S 0.55 deleterious(0.04) benign(0.037) TCGA-O2-A52Q-01 11 67195988 67195988 G C RPS6KB2 5'UTR 0.46 TCGA-O2-A52Q-01 11 68343434 68343434 G T PPP6R3 Missense_Mutation p.D490Y 0.18 deleterious(0.01) benign(0.384) TCGA-O2-A52Q-01 11 7021991 7021991 C A ZNF214 Missense_Mutation p.C308F 0.52 deleterious(0) probably_damaging(0.999) TCGA-O2-A52Q-01 11 7063619 7063619 G A NLRP14 Missense_Mutation p.G121D 0.35 tolerated(0.12) benign(0.012) TCGA-O2-A52Q-01 11 73809224 73809224 C G C2CD3 Missense_Mutation p.D937H 0.27 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 11 73941339 73941339 A G PPME1 Missense_Mutation p.I150V 0.20 tolerated(0.38) benign(0.035) TCGA-O2-A52Q-01 11 76918394 76918394 C T MYO7A Silent p.L1935L 0.32 TCGA-O2-A52Q-01 11 76979519 76979519 C A GDPD4 Missense_Mutation p.E230D 0.31 deleterious(0.01) probably_damaging(0.99) TCGA-O2-A52Q-01 11 77583386 77583386 C T AAMDC 3'UTR 0.29 TCGA-O2-A52Q-01 11 7949841 7949841 A C OR10A6 Missense_Mutation p.F123L 0.45 deleterious(0.02) benign(0.271) TCGA-O2-A52Q-01 11 801255 801255 C G PIDD Silent p.P531P 0.45 TCGA-O2-A52Q-01 11 84028017 84028017 C A DLG2 Intron 0.16 TCGA-O2-A52Q-01 11 88386425 88386425 G C GRM5 Missense_Mutation p.P353R 0.36 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 11 92086062 92086062 C A FAT3 Missense_Mutation p.H262N 0.37 possibly_damaging(0.908) TCGA-O2-A52Q-01 11 92534329 92534329 T A FAT3 Missense_Mutation p.I2717N 0.28 benign(0.299) TCGA-O2-A52Q-01 11 94602411 94602411 T A AMOTL1 Missense_Mutation p.L846Q 0.18 tolerated(0.57) possibly_damaging(0.506) TCGA-O2-A52Q-01 11 95712321 95712321 G A MAML2 Missense_Mutation p.P1088S 0.41 unknown(0) TCGA-O2-A52Q-01 12 100732842 100732843 TG A SCYL2 Frame_Shift_Del p.F894Lfs*21 0.27 TCGA-O2-A52Q-01 12 100926273 100926273 C A NR1H4 Nonsense_Mutation p.Y171* 0.15 TCGA-O2-A52Q-01 12 104171682 104171682 C A NT5DC3 Missense_Mutation p.Q524H 0.49 tolerated(0.11) probably_damaging(1) TCGA-O2-A52Q-01 12 104181244 104181244 C G NT5DC3 Missense_Mutation p.G388A 0.44 deleterious(0.01) probably_damaging(0.932) TCGA-O2-A52Q-01 12 104490177 104490177 G A HCFC2 Missense_Mutation p.R569H 0.07 tolerated(0.14) probably_damaging(0.991) TCGA-O2-A52Q-01 12 106464674 106464674 C A NUAK1 Missense_Mutation p.W237L 0.15 deleterious(0) probably_damaging(0.999) TCGA-O2-A52Q-01 12 108004102 108004102 G A BTBD11 Silent p.G593G 0.16 TCGA-O2-A52Q-01 12 108010959 108010959 G C BTBD11 Missense_Mutation p.G699R 0.55 deleterious(0.01) possibly_damaging(0.889) TCGA-O2-A52Q-01 12 108985435 108985435 C A TMEM119 Missense_Mutation p.G242V 0.51 tolerated_low_confidence(0.05) benign(0.096) TCGA-O2-A52Q-01 12 110232202 110232202 C A TRPV4 Missense_Mutation p.V475L 0.38 tolerated(0.22) possibly_damaging(0.804) TCGA-O2-A52Q-01 12 110778734 110778734 G T ATP2A2 Missense_Mutation p.V678F 0.13 deleterious(0) probably_damaging(0.918) TCGA-O2-A52Q-01 12 113416399 113416399 A T OAS2 5'UTR 0.19 TCGA-O2-A52Q-01 12 113706599 113706599 A T TPCN1 Missense_Mutation p.Q266L 0.14 deleterious(0) possibly_damaging(0.772) TCGA-O2-A52Q-01 12 113753233 113753233 C A SLC8B1 Missense_Mutation p.D348Y 0.24 deleterious(0) probably_damaging(0.996) TCGA-O2-A52Q-01 12 120510472 120510472 G C CCDC64 Missense_Mutation p.R416P 0.12 tolerated(0.15) probably_damaging(0.921) TCGA-O2-A52Q-01 12 124335500 124335500 C A DNAH10 Nonsense_Mutation p.Y1938* 0.16 TCGA-O2-A52Q-01 12 128899755 128899755 G T TMEM132C Missense_Mutation p.K188N 0.16 tolerated(0.17) benign(0.039) TCGA-O2-A52Q-01 12 129559541 129559541 C A TMEM132D Missense_Mutation p.D727Y 0.10 deleterious(0) probably_damaging(0.988) TCGA-O2-A52Q-01 12 133198447 133198447 C A P2RX2 Silent p.P461P 0.14 TCGA-O2-A52Q-01 12 13716154 13716154 A G GRIN2B Missense_Mutation p.F1340L 0.53 tolerated(0.11) probably_damaging(0.992) TCGA-O2-A52Q-01 12 15102815 15102815 C G ARHGDIB Silent p.P62P 0.52 TCGA-O2-A52Q-01 12 18644395 18644396 AG - PIK3C2G Frame_Shift_Del p.K859Rfs*29 0.32 TCGA-O2-A52Q-01 12 18644448 18644448 C T PIK3C2G Missense_Mutation p.L876F 0.08 deleterious(0) probably_damaging(0.946) TCGA-O2-A52Q-01 12 25398282 25398282 C A KRAS Missense_Mutation p.G13C 0.75 deleterious(0.02) probably_damaging(0.997) TCGA-O2-A52Q-01 12 25671867 25671867 G T IFLTD1 Missense_Mutation p.R351S 0.63 tolerated(0.25) benign(0.262) TCGA-O2-A52Q-01 12 39947873 39947873 C A ABCD2 Missense_Mutation p.L688F 0.13 deleterious(0) probably_damaging(0.984) TCGA-O2-A52Q-01 12 4479697 4479697 G T FGF23 Missense_Mutation p.L190M 0.42 tolerated(0.13) benign(0.236) TCGA-O2-A52Q-01 12 4488708 4488708 C A FGF23 Missense_Mutation p.C14F 0.60 tolerated(0.3) benign(0.154) TCGA-O2-A52Q-01 12 46244694 46244694 A G ARID2 Missense_Mutation p.S930G 0.06 tolerated_low_confidence(0.17) benign(0.16) TCGA-O2-A52Q-01 12 48528031 48528031 G C PFKM Missense_Mutation p.V275L 0.15 deleterious(0) benign(0.247) TCGA-O2-A52Q-01 12 49227225 49227225 C T DDX23 Silent p.V546V 0.45 TCGA-O2-A52Q-01 12 49431087 49431087 G T KMT2D Missense_Mutation p.S3351Y 0.53 possibly_damaging(0.862) TCGA-O2-A52Q-01 12 49743334 49743334 C T DNAJC22 Missense_Mutation p.L227F 0.42 tolerated(0.24) possibly_damaging(0.736) TCGA-O2-A52Q-01 12 53676949 53676949 A G ESPL1 Missense_Mutation p.H943R 0.53 tolerated(0.09) probably_damaging(0.917) TCGA-O2-A52Q-01 12 54110109 54110109 C A CALCOCO1 Missense_Mutation p.A314S 0.15 deleterious(0.04) benign(0.004) TCGA-O2-A52Q-01 12 54765335 54765335 T A ZNF385A Nonsense_Mutation p.K196* 0.15 TCGA-O2-A52Q-01 12 55725711 55725711 C A OR6C3 Missense_Mutation p.P76H 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-O2-A52Q-01 12 57111981 57111981 G A NACA Intron 0.15 TCGA-O2-A52Q-01 12 58005763 58005763 G T ARHGEF25 Intron 0.40 TCGA-O2-A52Q-01 12 6085355 6085355 G T VWF Nonsense_Mutation p.C2453* 0.58 TCGA-O2-A52Q-01 12 64485106 64485106 G T SRGAP1 Missense_Mutation p.R496L 0.41 tolerated(0.39) probably_damaging(0.998) TCGA-O2-A52Q-01 12 66152689 66152689 C T RPSAP52 RNA 0.24 TCGA-O2-A52Q-01 12 70723297 70723297 G A CNOT2 Silent p.T111T 0.46 TCGA-O2-A52Q-01 12 70953198 70953198 G T PTPRB Missense_Mutation p.Q1547K 0.50 tolerated(0.38) benign(0.005) TCGA-O2-A52Q-01 12 72057395 72057396 - GAGCA ZFC3H1 5'UTR 0.45 TCGA-O2-A52Q-01 12 72317028 72317029 - T TBC1D15 3'UTR 0.29 TCGA-O2-A52Q-01 12 73046255 73046255 G T TRHDE Missense_Mutation p.R898S 0.13 tolerated(0.09) benign(0.191) TCGA-O2-A52Q-01 12 75601275 75601275 C A KCNC2 Missense_Mutation p.E163D 0.18 deleterious(0) possibly_damaging(0.849) TCGA-O2-A52Q-01 12 75601543 75601543 G T KCNC2 Missense_Mutation p.P74Q 0.50 deleterious_low_confidence(0.04) benign(0.021) TCGA-O2-A52Q-01 12 76763454 76763454 C G OSBPL8 Missense_Mutation p.D735H 0.08 deleterious(0) probably_damaging(0.995) TCGA-O2-A52Q-01 12 78225394 78225394 G T NAV3 Missense_Mutation p.M51I 0.14 tolerated_low_confidence(0.58) benign(0.001) TCGA-O2-A52Q-01 12 7864153 7864153 G T DPPA3 5'UTR 0.49 TCGA-O2-A52Q-01 12 81536961 81536961 G T ACSS3 Missense_Mutation p.V286F 0.08 deleterious(0) probably_damaging(0.961) TCGA-O2-A52Q-01 12 81647446 81647446 C A ACSS3 Nonsense_Mutation p.Y664* 0.14 TCGA-O2-A52Q-01 12 83251134 83251134 G T TMTC2 Silent p.G143G 0.59 TCGA-O2-A52Q-01 12 8756843 8756843 G A AICDA 3'UTR 0.38 TCGA-O2-A52Q-01 12 91348313 91348313 T A CCER1 Missense_Mutation p.Q69H 0.17 tolerated(0.15) possibly_damaging(0.452) TCGA-O2-A52Q-01 12 93213248 93213248 C A EEA1 Missense_Mutation p.D522Y 0.44 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 12 96367950 96367950 C A HAL 3'UTR 0.49 TCGA-O2-A52Q-01 12 96368018 96368018 C T HAL Missense_Mutation p.D656N 0.42 tolerated_low_confidence(0.12) benign(0.038) TCGA-O2-A52Q-01 12 99007562 99007562 T C IKBIP Missense_Mutation p.Y285C 0.19 deleterious(0.03) probably_damaging(0.939) TCGA-O2-A52Q-01 12 99166878 99166878 A T ANKS1B Missense_Mutation p.I1149N 0.10 deleterious(0) probably_damaging(0.996) TCGA-O2-A52Q-01 13 102227776 102227776 T C ITGBL1 Silent p.G155G 0.09 TCGA-O2-A52Q-01 13 109445925 109445925 T A MYO16 Missense_Mutation p.D204E 0.46 tolerated(0.08) possibly_damaging(0.533) TCGA-O2-A52Q-01 13 110434694 110434694 C A IRS2 Missense_Mutation p.G1236V 0.57 deleterious(0.05) benign(0.006) TCGA-O2-A52Q-01 13 21086598 21086598 C T CRYL1 Missense_Mutation p.A45T 0.68 tolerated_low_confidence(0.27) possibly_damaging(0.53) TCGA-O2-A52Q-01 13 23910211 23910211 T A SACS Nonsense_Mutation p.R2602* 0.45 TCGA-O2-A52Q-01 13 24242118 24242118 G C TNFRSF19 Splice_Site p.X246_splice 0.33 TCGA-O2-A52Q-01 13 24515855 24515855 G A ANKRD20A19P RNA 0.34 TCGA-O2-A52Q-01 13 28494600 28494600 C A PDX1 Missense_Mutation p.L109M 0.71 deleterious(0.03) benign(0.014) TCGA-O2-A52Q-01 13 31498546 31498546 G T MEDAG Nonsense_Mutation p.E296* 0.41 TCGA-O2-A52Q-01 13 36385035 36385035 C A DCLK1 Missense_Mutation p.G542V 0.46 deleterious(0.01) probably_damaging(0.979) TCGA-O2-A52Q-01 13 38145595 38145595 C G POSTN Missense_Mutation p.G697A 0.44 tolerated_low_confidence(0.58) benign(0.001) TCGA-O2-A52Q-01 13 38166297 38166297 C A POSTN Missense_Mutation p.V75L 0.57 deleterious(0.02) benign(0.133) TCGA-O2-A52Q-01 13 39542642 39542642 C A STOML3 Missense_Mutation p.W182C 0.41 deleterious(0) probably_damaging(0.983) TCGA-O2-A52Q-01 13 46287712 46287712 G T SPERT Missense_Mutation p.E184D 0.44 tolerated(0.59) benign(0.018) TCGA-O2-A52Q-01 13 52440151 52440151 G T CCDC70 Nonsense_Mutation p.E213* 0.48 TCGA-O2-A52Q-01 13 61987637 61987637 T C PCDH20 Missense_Mutation p.I199V 0.40 tolerated(0.29) benign(0.13) TCGA-O2-A52Q-01 13 78146280 78146280 C T SCEL Silent p.P167P 0.44 TCGA-O2-A52Q-01 13 78492724 78492724 A T EDNRB Silent p.S85S 0.52 TCGA-O2-A52Q-01 13 88328025 88328025 C A SLITRK5 Missense_Mutation p.L128I 0.44 deleterious(0) probably_damaging(0.988) TCGA-O2-A52Q-01 14 102472326 102472326 C G DYNC1H1 Nonsense_Mutation p.Y1845* 0.29 TCGA-O2-A52Q-01 14 105353626 105353626 C T CEP170B Missense_Mutation p.P1017L 0.22 deleterious(0.04) benign(0.013) TCGA-O2-A52Q-01 14 105408047 105408047 C A AHNAK2 Nonsense_Mutation p.E4581* 0.27 TCGA-O2-A52Q-01 14 105409151 105409151 T A AHNAK2 Nonsense_Mutation p.K4213* 0.32 TCGA-O2-A52Q-01 14 105413290 105413290 T A AHNAK2 Missense_Mutation p.E2833V 0.35 probably_damaging(0.972) TCGA-O2-A52Q-01 14 105859671 105859671 G T PACS2 Silent p.R865R 0.30 TCGA-O2-A52Q-01 14 106322270 106322270 C T IGHM Silent p.P18P 0.44 TCGA-O2-A52Q-01 14 106877909 106877909 G A IGHV4-39 Nonsense_Mutation p.Q29* 0.23 TCGA-O2-A52Q-01 14 20215601 20215601 A T OR4Q3 Missense_Mutation p.Q5H 0.44 deleterious(0.03) benign(0.029) TCGA-O2-A52Q-01 14 21502100 21502100 G A RNASE13 Silent p.H116H 0.47 TCGA-O2-A52Q-01 14 23235809 23235809 C G OXA1L Missense_Mutation p.R27G 0.27 tolerated_low_confidence(0.14) benign(0) TCGA-O2-A52Q-01 14 23893259 23893259 C A MYH7 Nonsense_Mutation p.E927* 0.25 TCGA-O2-A52Q-01 14 23894050 23894050 G A MYH7 Silent p.R869R 0.24 TCGA-O2-A52Q-01 14 24724658 24724658 C T TGM1 Silent p.E519E 0.27 TCGA-O2-A52Q-01 14 24798407 24798407 C T ADCY4 Missense_Mutation p.G462S 0.22 tolerated(0.41) benign(0.074) TCGA-O2-A52Q-01 14 25076532 25076532 C A GZMH Missense_Mutation p.Q140H 0.23 tolerated(0.08) benign(0.028) TCGA-O2-A52Q-01 14 36003511 36003511 G A INSM2 Missense_Mutation p.R18Q 0.26 deleterious(0) probably_damaging(0.994) TCGA-O2-A52Q-01 14 51467495 51467495 C G TRIM9 Missense_Mutation p.S457T 0.28 tolerated(0.15) possibly_damaging(0.53) TCGA-O2-A52Q-01 14 53010175 53010175 T A TXNDC16 Missense_Mutation p.Q34L 0.29 deleterious(0.01) benign(0.209) TCGA-O2-A52Q-01 14 58048022 58048022 G T SLC35F4 Silent p.A275A 0.31 TCGA-O2-A52Q-01 14 58604952 58604952 G A C14orf37 Silent p.H375H 0.30 TCGA-O2-A52Q-01 14 58605204 58605204 C A C14orf37 Silent p.L291L 0.32 TCGA-O2-A52Q-01 14 58910742 58910742 A T KIAA0586 Missense_Mutation p.K272I 0.44 deleterious(0) probably_damaging(0.996) TCGA-O2-A52Q-01 14 59950922 59950922 C A L3HYPDH Missense_Mutation p.G38V 0.26 deleterious(0) probably_damaging(0.992) TCGA-O2-A52Q-01 14 60076870 60076870 C A RTN1 Intron 0.14 TCGA-O2-A52Q-01 14 61486264 61486264 G A SLC38A6 Silent p.V123V 0.36 TCGA-O2-A52Q-01 14 63416962 63416962 C A KCNH5 Missense_Mutation p.V420L 0.20 tolerated(0.17) benign(0.065) TCGA-O2-A52Q-01 14 63920547 63920547 C T PPP2R5E Missense_Mutation p.V72I 0.30 tolerated(0.14) benign(0.019) TCGA-O2-A52Q-01 14 65208621 65208621 G T PLEKHG3 Missense_Mutation p.V740F 0.27 tolerated(0.05) benign(0.104) TCGA-O2-A52Q-01 14 65406343 65406343 G T GPX2 Missense_Mutation p.R146S 0.31 tolerated(0.73) benign(0.011) TCGA-O2-A52Q-01 14 69256778 69256778 G A ZFP36L1 Silent p.T163T 0.29 TCGA-O2-A52Q-01 14 70527645 70527645 C A SLC8A3 Missense_Mutation p.R599M 0.29 deleterious(0.04) benign(0.331) TCGA-O2-A52Q-01 14 73141016 73141016 C - DPF3 Frame_Shift_Del p.G268Afs*4 0.37 TCGA-O2-A52Q-01 14 74327295 74327295 C T PTGR2 Missense_Mutation p.P31S 0.31 tolerated(0.11) benign(0.001) TCGA-O2-A52Q-01 14 75151206 75151206 T A AREL1 Missense_Mutation p.D65V 0.32 deleterious(0.04) probably_damaging(0.93) TCGA-O2-A52Q-01 14 77272943 77272943 C A ANGEL1 Missense_Mutation p.R399L 0.28 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 14 77275633 77275633 C A ANGEL1 Nonsense_Mutation p.E140* 0.34 TCGA-O2-A52Q-01 14 77491743 77491743 G C IRF2BPL 3'UTR 0.14 TCGA-O2-A52Q-01 14 77685232 77685232 C T TMEM63C Missense_Mutation p.R26W 0.31 deleterious(0) possibly_damaging(0.901) TCGA-O2-A52Q-01 14 88477782 88477782 C A GPR65 Silent p.V197V 0.29 TCGA-O2-A52Q-01 14 88729807 88729807 G T KCNK10 Silent p.R47R 0.25 TCGA-O2-A52Q-01 14 90499470 90499470 G A TDP1 Silent p.V555V 0.11 TCGA-O2-A52Q-01 14 91770067 91770067 C A CCDC88C Nonsense_Mutation p.E1205* 0.31 TCGA-O2-A52Q-01 14 93408174 93408174 G T ITPK1 Missense_Mutation p.A326D 0.42 tolerated(0.61) benign(0) TCGA-O2-A52Q-01 14 95029960 95029960 C T SERPINA4 Silent p.P47P 0.25 TCGA-O2-A52Q-01 14 95903254 95903254 C G SYNE3 Missense_Mutation p.G814A 0.29 deleterious(0) benign(0.007) TCGA-O2-A52Q-01 14 96134857 96134857 C T TCL6 Intron 0.28 TCGA-O2-A52Q-01 14 96773114 96773114 C A ATG2B Missense_Mutation p.M1481I 0.15 tolerated(0.19) benign(0.001) TCGA-O2-A52Q-01 15 22368693 22368693 C A OR4M2 Missense_Mutation p.P40T 0.25 tolerated(0.29) benign(0.334) TCGA-O2-A52Q-01 15 23812130 23812130 A T MKRN3 Missense_Mutation p.R401W 0.52 deleterious(0) probably_damaging(0.98) TCGA-O2-A52Q-01 15 25455092 25455092 C A SNORD115-22 RNA 0.50 TCGA-O2-A52Q-01 15 28326936 28326936 C A OCA2 Missense_Mutation p.A29S 0.49 tolerated_low_confidence(0.77) benign(0.048) TCGA-O2-A52Q-01 15 40308852 40308852 G A EIF2AK4 Silent p.K1303K 0.48 TCGA-O2-A52Q-01 15 43896327 43896327 C A STRC Silent p.L1414L 0.29 TCGA-O2-A52Q-01 15 48064048 48064048 G T SEMA6D 3'UTR 0.65 TCGA-O2-A52Q-01 15 50546774 50546774 C T HDC Missense_Mutation p.D177N 0.52 tolerated(0.13) benign(0.077) TCGA-O2-A52Q-01 15 54847678 54847678 G T UNC13C Missense_Mutation p.A1976S 0.21 deleterious_low_confidence(0.04) benign(0.061) TCGA-O2-A52Q-01 15 60789662 60789662 C T RORA Missense_Mutation p.D555N 0.71 deleterious_low_confidence(0) benign(0.321) TCGA-O2-A52Q-01 15 67528359 67528359 C T AAGAB Missense_Mutation p.E137K 0.45 deleterious(0) probably_damaging(0.997) TCGA-O2-A52Q-01 15 69329541 69329541 C T NOX5 Silent p.L454L 0.61 TCGA-O2-A52Q-01 15 73541426 73541426 C G NEO1 Missense_Mutation p.N544K 0.52 deleterious(0.04) probably_damaging(0.982) TCGA-O2-A52Q-01 15 78471927 78471927 G T ACSBG1 Missense_Mutation p.H483Q 0.44 deleterious(0.04) probably_damaging(1) TCGA-O2-A52Q-01 15 89386736 89386736 C T ACAN Missense_Mutation p.A303V 0.52 deleterious(0) unknown(0) TCGA-O2-A52Q-01 15 90320343 90320343 G A MESP2 Missense_Mutation p.C252Y 0.44 tolerated(0.19) benign(0.03) TCGA-O2-A52Q-01 16 11933809 11933809 C T RSL1D1 Missense_Mutation p.E297K 0.23 tolerated(1) benign(0.004) TCGA-O2-A52Q-01 16 12162929 12162929 G T SNX29 Missense_Mutation p.S420I 0.19 deleterious(0.03) benign(0.023) TCGA-O2-A52Q-01 16 19483496 19483496 G T TMC5 Missense_Mutation p.W623C 0.37 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 16 19883795 19883795 G C GPRC5B Missense_Mutation p.R125G 0.13 deleterious(0) probably_damaging(0.999) TCGA-O2-A52Q-01 16 20352659 20352659 C A UMOD Splice_Site p.X444_splice 0.22 TCGA-O2-A52Q-01 16 20380950 20380950 C A PDILT Missense_Mutation p.R327L 0.36 tolerated(0.08) possibly_damaging(0.672) TCGA-O2-A52Q-01 16 20491925 20491925 C A ACSM2A Silent p.R438R 0.37 TCGA-O2-A52Q-01 16 21181881 21181881 G T TMEM159 Missense_Mutation p.V74L 0.16 tolerated(0.12) benign(0.013) TCGA-O2-A52Q-01 16 24231335 24231335 G A PRKCB 3'UTR 0.44 TCGA-O2-A52Q-01 16 24802363 24802363 C G TNRC6A Missense_Mutation p.C800W 0.21 deleterious(0.02) possibly_damaging(0.688) TCGA-O2-A52Q-01 16 27448838 27448838 A T IL21R Missense_Mutation p.E61V 0.36 tolerated(0.08) benign(0.056) TCGA-O2-A52Q-01 16 28330379 28330379 A T SBK1 Missense_Mutation p.E97V 0.40 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 16 28990626 28990626 A T SPNS1 Missense_Mutation p.S199C 0.21 deleterious(0.01) possibly_damaging(0.798) TCGA-O2-A52Q-01 16 29912973 29912973 G A ASPHD1 Silent p.V227V 0.39 TCGA-O2-A52Q-01 16 30097705 30097705 A T TBX6 Silent p.A384A 0.38 TCGA-O2-A52Q-01 16 31091274 31091274 G T ZNF646 Missense_Mutation p.R1210L 0.40 deleterious(0) probably_damaging(0.996) TCGA-O2-A52Q-01 16 31368670 31368670 C A ITGAX Missense_Mutation p.P139T 0.43 deleterious(0.03) probably_damaging(0.99) TCGA-O2-A52Q-01 16 32266217 32266217 C T TP53TG3D Missense_Mutation p.S123L 0.15 deleterious_low_confidence(0) unknown(0) TCGA-O2-A52Q-01 16 4664816 4664816 C A UBALD1 5'UTR 0.41 TCGA-O2-A52Q-01 16 47252779 47252779 C A ITFG1 Missense_Mutation p.A485S 0.17 tolerated(0.15) probably_damaging(0.986) TCGA-O2-A52Q-01 16 50353882 50353882 C A BRD7 Missense_Mutation p.V607L 0.16 tolerated(0.08) probably_damaging(0.998) TCGA-O2-A52Q-01 16 53190069 53190069 C G CHD9 Nonsense_Mutation p.S23* 0.09 TCGA-O2-A52Q-01 16 57099176 57099176 T C NLRC5 Missense_Mutation p.C1403R 0.22 deleterious(0.03) benign(0.062) TCGA-O2-A52Q-01 16 57474776 57474776 A G CIAPIN1 Missense_Mutation p.V22A 0.31 tolerated(0.76) benign(0.002) TCGA-O2-A52Q-01 16 58743446 58743446 C A GOT2 Missense_Mutation p.D349Y 0.36 deleterious(0.01) benign(0.291) TCGA-O2-A52Q-01 16 67236305 67236305 G C ELMO3 Missense_Mutation p.E476Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-O2-A52Q-01 16 67322506 67322506 G T PLEKHG4 Missense_Mutation p.C1190F 0.39 tolerated_low_confidence(1) benign(0.012) TCGA-O2-A52Q-01 16 67337131 67337131 G T KCTD19 Missense_Mutation p.S187R 0.23 deleterious(0.04) benign(0.043) TCGA-O2-A52Q-01 16 67424886 67424886 C G TPPP3 Missense_Mutation p.K43N 0.20 tolerated(0.22) benign(0.021) TCGA-O2-A52Q-01 16 67917841 67917841 T G EDC4 Intron 0.21 TCGA-O2-A52Q-01 16 70502760 70502760 G T FUK Silent p.G224G 0.13 TCGA-O2-A52Q-01 16 71317643 71317643 C A CMTR2 Missense_Mutation p.M727I 0.28 tolerated(0.2) benign(0.021) TCGA-O2-A52Q-01 16 77227551 77227551 G T MON1B Missense_Mutation p.A118S 0.44 tolerated(0.05) probably_damaging(0.968) TCGA-O2-A52Q-01 16 77759352 77759352 G T NUDT7 Missense_Mutation p.K20N 0.25 deleterious(0.01) probably_damaging(0.992) TCGA-O2-A52Q-01 16 78005824 78005824 T A VAT1L Silent p.T385T 0.35 TCGA-O2-A52Q-01 16 78142341 78142341 G T WWOX Missense_Mutation p.Q43H 0.50 tolerated(0.06) benign(0.349) TCGA-O2-A52Q-01 16 80718679 80718679 G T CDYL2 Silent p.P124P 0.10 TCGA-O2-A52Q-01 16 80718748 80718748 C A CDYL2 Silent p.G101G 0.14 TCGA-O2-A52Q-01 16 83813654 83813654 C A CDH13 Missense_Mutation p.T635K 0.15 tolerated(1) probably_damaging(0.913) TCGA-O2-A52Q-01 16 84163281 84163281 T C HSDL1 Missense_Mutation p.T256A 0.38 tolerated(0.44) benign(0.001) TCGA-O2-A52Q-01 16 845741 845741 C T CHTF18 Silent p.I744I 0.46 TCGA-O2-A52Q-01 16 90161013 90161013 C T TUBB8P7 Intron 0.10 TCGA-O2-A52Q-01 16 90161040 90161040 C G TUBB8P7 Intron 0.12 TCGA-O2-A52Q-01 17 10315837 10315837 C A MYH8 Splice_Site p.X423_splice 0.60 TCGA-O2-A52Q-01 17 16068423 16068423 T A NCOR1 Missense_Mutation p.Q163L 0.13 benign(0.007) TCGA-O2-A52Q-01 17 1656034 1656034 A T SERPINF2 Missense_Mutation p.K338M 0.52 deleterious(0) probably_damaging(0.99) TCGA-O2-A52Q-01 17 17109603 17109603 C A PLD6 5'UTR 0.67 TCGA-O2-A52Q-01 17 20806030 20806030 C T RP11-344E13.3 RNA 0.29 TCGA-O2-A52Q-01 17 21205505 21205505 C G MAP2K3 Missense_Mutation p.F150L 0.27 tolerated(0.12) benign(0.074) TCGA-O2-A52Q-01 17 26604384 26604384 G C AC061975.8 5'Flank 0.19 TCGA-O2-A52Q-01 17 27308543 27308543 G A SEZ6 Silent p.D190D 0.18 TCGA-O2-A52Q-01 17 27442072 27442072 G A MYO18A Silent p.V788V 0.15 TCGA-O2-A52Q-01 17 27613718 27613718 C A NUFIP2 Missense_Mutation p.G432C 0.31 tolerated(0.07) possibly_damaging(0.723) TCGA-O2-A52Q-01 17 30615952 30615952 C G RHBDL3 Missense_Mutation p.R146G 0.34 tolerated(0.62) benign(0.044) TCGA-O2-A52Q-01 17 3181535 3181535 G T OR3A2 Missense_Mutation p.A232D 0.64 deleterious(0) possibly_damaging(0.707) TCGA-O2-A52Q-01 17 32598753 32598753 C A CCL7 Missense_Mutation p.P78T 0.11 deleterious(0.03) probably_damaging(0.976) TCGA-O2-A52Q-01 17 33592833 33592834 GG A SLFN5 Frame_Shift_Del p.G868Rfs*20 0.15 TCGA-O2-A52Q-01 17 33679998 33679998 G T SLFN11 Missense_Mutation p.P695T 0.18 deleterious(0.01) probably_damaging(0.988) TCGA-O2-A52Q-01 17 33904142 33904142 G A PEX12 Nonsense_Mutation p.Q199* 0.08 TCGA-O2-A52Q-01 17 34072163 34072163 C A GAS2L2 Missense_Mutation p.D785Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-O2-A52Q-01 17 34431326 34431326 C G CCL4 Missense_Mutation p.L10V 0.09 tolerated(1) benign(0.02) TCGA-O2-A52Q-01 17 3474872 3474872 C A SHPK Missense_Mutation p.G765C 0.44 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 17 35627665 35627665 C A ACACA Missense_Mutation p.D366Y 0.17 deleterious(0.01) probably_damaging(0.957) TCGA-O2-A52Q-01 17 38024821 38024821 C A ZPBP2 Silent p.T24T 0.38 TCGA-O2-A52Q-01 17 3850754 3850754 C A ATP2A3 Silent p.L342L 0.50 TCGA-O2-A52Q-01 17 39020065 39020065 C A KRT12 Missense_Mutation p.D287Y 0.28 deleterious(0) probably_damaging(0.995) TCGA-O2-A52Q-01 17 39020090 39020090 G T KRT12 Silent p.G278G 0.30 TCGA-O2-A52Q-01 17 39406017 39406017 G T KRTAP9-4 Missense_Mutation p.R15S 0.22 tolerated(0.15) unknown(0) TCGA-O2-A52Q-01 17 39506783 39506783 C A KRT33A Silent p.R79R 0.37 TCGA-O2-A52Q-01 17 39637095 39637095 C A KRT35 Silent p.G85G 0.22 TCGA-O2-A52Q-01 17 39724880 39724880 G T KRT9 Silent p.T350T 0.35 TCGA-O2-A52Q-01 17 40831665 40831665 G A CCR10 Missense_Mutation p.S332L 0.23 tolerated(0.24) benign(0.006) TCGA-O2-A52Q-01 17 41001160 41001160 G T AOC2 Missense_Mutation p.W549L 0.19 deleterious(0.02) possibly_damaging(0.813) TCGA-O2-A52Q-01 17 43045040 43045040 G A C1QL1 Missense_Mutation p.T126M 0.17 tolerated(0.06) benign(0.002) TCGA-O2-A52Q-01 17 43907539 43907539 G T CRHR1 Missense_Mutation p.V201F 0.38 deleterious(0.04) benign(0.296) TCGA-O2-A52Q-01 17 46608140 46608140 C A HOXB1 Missense_Mutation p.A43S 0.18 tolerated(0.55) benign(0.013) TCGA-O2-A52Q-01 17 46673746 46673746 C A HOXB6 3'UTR 0.36 TCGA-O2-A52Q-01 17 47785206 47785206 G T SLC35B1 5'UTR 0.12 TCGA-O2-A52Q-01 17 48745139 48745139 G C ABCC3 Intron 0.20 TCGA-O2-A52Q-01 17 4884587 4884587 C T CAMTA2 Silent p.Q234Q 0.56 TCGA-O2-A52Q-01 17 51900363 51900363 T A KIF2B 5'UTR 0.32 TCGA-O2-A52Q-01 17 51901309 51901309 G - KIF2B Frame_Shift_Del p.G306Efs*63 0.25 TCGA-O2-A52Q-01 17 51902078 51902078 C A KIF2B Missense_Mutation p.P562T 0.29 tolerated(0.12) benign(0.016) TCGA-O2-A52Q-01 17 53798339 53798339 G A TMEM100 Silent p.I31I 0.34 TCGA-O2-A52Q-01 17 56585586 56585586 C G MTMR4 Missense_Mutation p.D201H 0.32 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 17 58511603 58511603 G T C17orf64 3'Flank 0.23 TCGA-O2-A52Q-01 17 59115416 59115416 G T BCAS3 Splice_Site p.X658_splice 0.25 TCGA-O2-A52Q-01 17 59871009 59871009 G C BRIP1 Silent p.L474L 0.46 TCGA-O2-A52Q-01 17 60038250 60038250 T A MED13 Missense_Mutation p.I1820F 0.40 deleterious(0) probably_damaging(0.969) TCGA-O2-A52Q-01 17 62038765 62038765 G C SCN4A Missense_Mutation p.P545A 0.39 deleterious(0.03) probably_damaging(0.999) TCGA-O2-A52Q-01 17 62049161 62049161 C A SCN4A Missense_Mutation p.A178S 0.14 tolerated(0.2) benign(0.02) TCGA-O2-A52Q-01 17 62135265 62135265 C A ERN1 Missense_Mutation p.R432L 0.33 tolerated(0.48) benign(0.245) TCGA-O2-A52Q-01 17 64880735 64880735 G T CACNG5 Missense_Mutation p.G176V 0.21 deleterious(0) possibly_damaging(0.858) TCGA-O2-A52Q-01 17 6554930 6554930 C A MED31 5'UTR 0.67 TCGA-O2-A52Q-01 17 66925324 66925324 C A ABCA8 Missense_Mutation p.G331C 0.38 deleterious(0.01) probably_damaging(0.99) TCGA-O2-A52Q-01 17 68128908 68128908 G T KCNJ16 Missense_Mutation p.S227I 0.41 tolerated(0.16) possibly_damaging(0.458) TCGA-O2-A52Q-01 17 7240677 7240677 C T ACAP1 Missense_Mutation p.R34C 0.52 deleterious(0) probably_damaging(0.999) TCGA-O2-A52Q-01 17 72518749 72518749 G A CD300LB 3'UTR 0.25 TCGA-O2-A52Q-01 17 73752570 73752570 T C ITGB4 Missense_Mutation p.L1590P 0.34 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 17 7415193 7415193 G C POLR2A Missense_Mutation p.D1389H 0.26 probably_damaging(0.951) TCGA-O2-A52Q-01 17 7640388 7640388 G A DNAH2 Missense_Mutation p.G328S 0.42 benign(0.119) TCGA-O2-A52Q-01 17 7797853 7797853 G T CHD3 Missense_Mutation p.R458L 0.43 possibly_damaging(0.569) TCGA-O2-A52Q-01 17 77984171 77984171 C A TBC1D16 Silent p.T189T 0.27 TCGA-O2-A52Q-01 17 78938210 78938210 G A RPTOR 3'UTR 0.41 TCGA-O2-A52Q-01 17 7907072 7907072 G T GUCY2D Missense_Mutation p.G236V 0.59 tolerated(0.77) possibly_damaging(0.762) TCGA-O2-A52Q-01 17 8243737 8243737 G A ODF4 Missense_Mutation p.R123K 0.46 tolerated(0.5) benign(0.09) TCGA-O2-A52Q-01 17 9792752 9792752 C A GLP2R Silent p.A464A 0.43 TCGA-O2-A52Q-01 18 13067919 13067919 G T CEP192 Silent p.T1526T 0.40 TCGA-O2-A52Q-01 18 19153647 19153647 C G ESCO1 Missense_Mutation p.K386N 0.07 tolerated(0.89) benign(0.036) TCGA-O2-A52Q-01 18 19154240 19154240 C A ESCO1 Missense_Mutation p.D189Y 0.09 deleterious(0.01) possibly_damaging(0.838) TCGA-O2-A52Q-01 18 21736037 21736037 C T CABYR Intron 0.41 TCGA-O2-A52Q-01 18 29055920 29055920 G T DSG3 Missense_Mutation p.Q899H 0.41 tolerated(0.4) benign(0.014) TCGA-O2-A52Q-01 18 29432572 29432572 C A TRAPPC8 Missense_Mutation p.C1163F 0.41 deleterious(0.03) benign(0.345) TCGA-O2-A52Q-01 18 29453548 29453548 T A TRAPPC8 Intron 0.55 TCGA-O2-A52Q-01 18 30093455 30093455 G T WBP11P1 RNA 0.34 TCGA-O2-A52Q-01 18 31314334 31314334 C T ASXL3 Missense_Mutation p.T346I 0.43 probably_damaging(1) TCGA-O2-A52Q-01 18 31318767 31318767 G T ASXL3 Missense_Mutation p.D467Y 0.17 possibly_damaging(0.613) TCGA-O2-A52Q-01 18 3845293 3845293 A G DLGAP1 Intron 0.40 TCGA-O2-A52Q-01 18 43221270 43221270 C A SLC14A2 Missense_Mutation p.A363D 0.45 deleterious(0) possibly_damaging(0.864) TCGA-O2-A52Q-01 18 48252473 48252473 A C MAPK4 Missense_Mutation p.D332A 0.48 deleterious(0.02) probably_damaging(0.994) TCGA-O2-A52Q-01 18 5290962 5290962 C G ZBTB14 Missense_Mutation p.R415S 0.40 deleterious_low_confidence(0.01) probably_damaging(0.966) TCGA-O2-A52Q-01 18 55024593 55024593 A T ST8SIA3 Missense_Mutation p.H251L 0.49 probably_damaging(0.976) TCGA-O2-A52Q-01 18 57013162 57013162 T A LMAN1 Missense_Mutation p.Q315L 0.50 deleterious(0.02) benign(0.284) TCGA-O2-A52Q-01 18 63547960 63547960 C A CDH7 Missense_Mutation p.L730M 0.44 deleterious(0) probably_damaging(0.997) TCGA-O2-A52Q-01 18 7043278 7043278 G C LAMA1 Missense_Mutation p.T368S 0.09 deleterious(0) probably_damaging(0.999) TCGA-O2-A52Q-01 18 8825832 8825832 G T SOGA2 Missense_Mutation p.G1442C 0.47 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 19 10362929 10362929 G A MRPL4 5'UTR 0.41 TCGA-O2-A52Q-01 19 10599915 10599915 C T KEAP1 Missense_Mutation p.R554Q 0.39 deleterious(0) probably_damaging(0.982) TCGA-O2-A52Q-01 19 11096972 11096973 - A SMARCA4 Frame_Shift_Ins p.D155Efs*4 0.33 TCGA-O2-A52Q-01 19 12800587 12800587 G A FBXW9 Silent p.F378F 0.55 TCGA-O2-A52Q-01 19 1360607 1360607 G C MUM1 Silent p.L230L 0.36 TCGA-O2-A52Q-01 19 14765917 14765917 C T EMR3 Missense_Mutation p.E152K 0.38 tolerated(0.92) benign(0.026) TCGA-O2-A52Q-01 19 14863259 14863259 G T EMR2 Missense_Mutation p.T557N 0.38 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 19 15465709 15465709 G A AKAP8 3'UTR 0.52 TCGA-O2-A52Q-01 19 15990599 15990599 G C CYP4F2 Silent p.L408L 0.46 TCGA-O2-A52Q-01 19 22255626 22255626 A T ZNF257 Missense_Mutation p.R7W 0.38 deleterious(0.01) probably_damaging(0.968) TCGA-O2-A52Q-01 19 22940327 22940327 C G ZNF99 Missense_Mutation p.G795A 0.48 deleterious(0.01) possibly_damaging(0.56) TCGA-O2-A52Q-01 19 23329018 23329018 C A ZNF730 Missense_Mutation p.T391N 0.62 deleterious(0.01) benign(0.057) TCGA-O2-A52Q-01 19 33467469 33467469 C G C19orf40 Missense_Mutation p.L177V 0.53 deleterious(0) probably_damaging(0.998) TCGA-O2-A52Q-01 19 34934760 34934760 G T UBA2 Missense_Mutation p.G198V 0.47 deleterious(0) probably_damaging(0.999) TCGA-O2-A52Q-01 19 3525958 3525958 A T FZR1 Silent p.G54G 0.25 TCGA-O2-A52Q-01 19 40095971 40095971 C A LGALS13 Silent p.P82P 0.43 TCGA-O2-A52Q-01 19 40368824 40368824 G A FCGBP Missense_Mutation p.S4175L 0.19 possibly_damaging(0.637) TCGA-O2-A52Q-01 19 4168422 4168422 G A CREB3L3 Silent p.K263K 0.36 TCGA-O2-A52Q-01 19 41828573 41828573 G T CCDC97 Nonsense_Mutation p.E329* 0.57 TCGA-O2-A52Q-01 19 42490050 42490050 G C ATP1A3 Missense_Mutation p.A204G 0.54 tolerated(0.05) probably_damaging(0.997) TCGA-O2-A52Q-01 19 43762609 43762609 C T PSG9 Splice_Site p.X330_splice 0.54 TCGA-O2-A52Q-01 19 44571359 44571359 G T ZNF223 Missense_Mutation p.D460Y 0.38 deleterious(0) probably_damaging(0.934) TCGA-O2-A52Q-01 19 46997123 46997123 G T PNMAL2 Silent p.R534R 0.39 TCGA-O2-A52Q-01 19 48244516 48244516 G T EHD2 Missense_Mutation p.G487W 0.46 deleterious(0) probably_damaging(0.999) TCGA-O2-A52Q-01 19 48968065 48968065 C A KCNJ14 3'UTR 0.51 TCGA-O2-A52Q-01 19 49254260 49254260 C A FUT1 Missense_Mutation p.M93I 0.47 deleterious(0.02) possibly_damaging(0.803) TCGA-O2-A52Q-01 19 49254261 49254261 A T FUT1 Missense_Mutation p.M93K 0.47 deleterious(0) possibly_damaging(0.886) TCGA-O2-A52Q-01 19 51453341 51453341 A T KLK5 Nonsense_Mutation p.C35* 0.45 TCGA-O2-A52Q-01 19 51537236 51537237 - T KLK12 Frame_Shift_Ins p.S66Kfs*67 0.53 TCGA-O2-A52Q-01 19 51537238 51537238 G T KLK12 Silent p.G65G 0.53 TCGA-O2-A52Q-01 19 52505516 52505516 C T ZNF615 Missense_Mutation p.D12N 0.53 deleterious(0) probably_damaging(0.998) TCGA-O2-A52Q-01 19 53056765 53056765 G T ZNF808 Missense_Mutation p.R199M 0.46 tolerated(0.1) possibly_damaging(0.556) TCGA-O2-A52Q-01 19 53844552 53844552 G T ZNF845 5'UTR 0.41 TCGA-O2-A52Q-01 19 53957950 53957950 A T ZNF761 RNA 0.47 TCGA-O2-A52Q-01 19 54291205 54291205 C A MIR372 RNA 0.42 TCGA-O2-A52Q-01 19 55798407 55798407 G T BRSK1 Missense_Mutation p.G57C 0.45 tolerated(0.35) probably_damaging(0.989) TCGA-O2-A52Q-01 19 56369800 56369800 G T NLRP4 Silent p.L347L 0.46 TCGA-O2-A52Q-01 19 56473432 56473432 G C NLRP8 Splice_Site p.X681_splice 0.38 TCGA-O2-A52Q-01 19 57286260 57286260 G C ZIM2 Nonsense_Mutation p.Y460* 0.57 TCGA-O2-A52Q-01 19 58965147 58965147 C T ZNF324B Missense_Mutation p.R27C 0.32 tolerated(0.14) benign(0.08) TCGA-O2-A52Q-01 19 9000555 9000555 G C MUC16 Missense_Mutation p.L13477V 0.53 probably_damaging(0.969) TCGA-O2-A52Q-01 19 9048545 9048545 G C MUC16 Nonsense_Mutation p.S11029* 0.52 TCGA-O2-A52Q-01 19 9090906 9090906 G A MUC16 Silent p.G303G 0.60 TCGA-O2-A52Q-01 19 9204232 9204232 C G OR1M1 Missense_Mutation p.F104L 0.45 tolerated(0.13) probably_damaging(0.986) TCGA-O2-A52Q-01 1 100185125 100185125 C A FRRS1 Missense_Mutation p.G362V 0.41 deleterious(0.02) probably_damaging(0.982) TCGA-O2-A52Q-01 1 100347248 100347248 G T AGL Splice_Site p.X770_splice 0.38 TCGA-O2-A52Q-01 1 101705367 101705367 T A S1PR1 Missense_Mutation p.L276H 0.32 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 1 102270025 102270025 C - OLFM3 Frame_Shift_Del p.T383Hfs*9 0.21 TCGA-O2-A52Q-01 1 103427798 103427798 G C COL11A1 Missense_Mutation p.I1016M 0.32 unknown(0) TCGA-O2-A52Q-01 1 109869641 109869641 T - SORT1 Frame_Shift_Del p.H539Pfs*8 0.12 TCGA-O2-A52Q-01 1 110282954 110282954 G C GSTM3 5'UTR 0.31 TCGA-O2-A52Q-01 1 110293322 110293322 C T EPS8L3 Missense_Mutation p.R578Q 0.10 tolerated(0.09) possibly_damaging(0.668) TCGA-O2-A52Q-01 1 110717450 110717450 C A SLC6A17 Nonsense_Mutation p.Y207* 0.29 TCGA-O2-A52Q-01 1 111146926 111146926 C A KCNA2 Missense_Mutation p.G160V 0.14 tolerated(0.3) probably_damaging(0.998) TCGA-O2-A52Q-01 1 1139548 1139548 C A TNFRSF18 Intron 0.43 TCGA-O2-A52Q-01 1 1139549 1139549 C G TNFRSF18 Intron 0.43 TCGA-O2-A52Q-01 1 115143487 115143487 C T DENND2C Missense_Mutation p.G637E 0.15 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 1 115319066 115319066 C G SIKE1 Missense_Mutation p.Q145H 0.33 tolerated(0.61) benign(0.077) TCGA-O2-A52Q-01 1 11586771 11586771 C G PTCHD2 Missense_Mutation p.L893V 0.53 tolerated_low_confidence(0.09) benign(0.001) TCGA-O2-A52Q-01 1 117127592 117127592 G A IGSF3 Silent p.L861L 0.15 TCGA-O2-A52Q-01 1 12855632 12855632 C A PRAMEF1 Nonsense_Mutation p.Y304* 0.55 TCGA-O2-A52Q-01 1 145281686 145281686 G C NOTCH2NL Missense_Mutation p.E206Q 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-O2-A52Q-01 1 145561449 145561449 T A ANKRD35 Silent p.A379A 0.16 TCGA-O2-A52Q-01 1 146631058 146631058 C T PRKAB2 3'UTR 0.25 TCGA-O2-A52Q-01 1 147381246 147381246 G C GJA8 Silent p.S388S 0.24 TCGA-O2-A52Q-01 1 149879677 149879677 G A SV2A Silent p.F487F 0.22 TCGA-O2-A52Q-01 1 150444995 150444995 G C RPRD2 Missense_Mutation p.E1191Q 0.08 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-O2-A52Q-01 1 152129413 152129413 C T RPTN Silent p.V54V 0.14 TCGA-O2-A52Q-01 1 152187697 152187697 G T HRNR Missense_Mutation p.H2136Q 0.05 unknown(0) TCGA-O2-A52Q-01 1 152192565 152192565 A T HRNR Missense_Mutation p.S514T 0.36 unknown(0) TCGA-O2-A52Q-01 1 152277196 152277196 T A FLG Missense_Mutation p.Q3389L 0.41 unknown(0) TCGA-O2-A52Q-01 1 152552184 152552184 G A LCE3D Nonsense_Mutation p.Q77* 0.43 TCGA-O2-A52Q-01 1 153748164 153748164 G A SLC27A3 Missense_Mutation p.G111D 0.25 tolerated(0.11) probably_damaging(0.959) TCGA-O2-A52Q-01 1 153906253 153906253 C T DENND4B Silent p.P1012P 0.40 TCGA-O2-A52Q-01 1 153958684 153958684 T C RAB13 Missense_Mutation p.K10R 0.23 deleterious(0) probably_damaging(0.993) TCGA-O2-A52Q-01 1 154296764 154296764 T A AQP10 Silent p.G238G 0.38 TCGA-O2-A52Q-01 1 154951252 154951252 G A CKS1B Silent p.%3D 0.38 TCGA-O2-A52Q-01 1 155025145 155025145 A G ADAM15 Splice_Site p.X27_splice 0.50 TCGA-O2-A52Q-01 1 155253923 155253923 G C HCN3 Missense_Mutation p.M289I 0.18 deleterious(0.01) benign(0.089) TCGA-O2-A52Q-01 1 156450630 156450630 T C MEF2D Missense_Mutation p.Y131C 0.39 tolerated(0.14) benign(0.04) TCGA-O2-A52Q-01 1 156874555 156874555 C A PEAR1 Silent p.T39T 0.13 TCGA-O2-A52Q-01 1 156914162 156914162 C A ARHGEF11 Missense_Mutation p.D1019Y 0.33 deleterious(0) possibly_damaging(0.773) TCGA-O2-A52Q-01 1 157504638 157504638 G T FCRL5 Missense_Mutation p.L483M 0.22 deleterious(0.04) benign(0.436) TCGA-O2-A52Q-01 1 157737093 157737093 C A FCRL2 Nonsense_Mutation p.G364* 0.39 TCGA-O2-A52Q-01 1 157772343 157772343 G T FCRL1 Missense_Mutation p.T144N 0.37 deleterious(0) probably_damaging(0.998) TCGA-O2-A52Q-01 1 158604365 158604365 C A SPTA1 Nonsense_Mutation p.G1845* 0.13 TCGA-O2-A52Q-01 1 158627447 158627447 C A SPTA1 Missense_Mutation p.K875N 0.13 tolerated(0.53) benign(0.405) TCGA-O2-A52Q-01 1 158648265 158648265 C G SPTA1 Missense_Mutation p.W246C 0.19 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 1 159036074 159036074 C T AIM2 Missense_Mutation p.G148R 0.11 tolerated(0.13) benign(0.251) TCGA-O2-A52Q-01 1 160395051 160395051 G T VANGL2 Missense_Mutation p.Q483H 0.33 tolerated(0.6) benign(0.001) TCGA-O2-A52Q-01 1 160535494 160535494 T A CD84 Missense_Mutation p.N30Y 0.21 tolerated(0.06) possibly_damaging(0.811) TCGA-O2-A52Q-01 1 160811234 160811234 G T CD244 Missense_Mutation p.L146M 0.41 tolerated(0.05) possibly_damaging(0.877) TCGA-O2-A52Q-01 1 160850492 160850492 G C ITLN1 Missense_Mutation p.P191A 0.18 deleterious(0.02) probably_damaging(0.973) TCGA-O2-A52Q-01 1 161518329 161518329 G A FCGR3A Silent p.I103I 0.07 TCGA-O2-A52Q-01 1 161599686 161599686 G A FCGR3B Silent p.I103I 0.41 TCGA-O2-A52Q-01 1 161682882 161682882 C T FCRLA Silent p.S287S 0.20 TCGA-O2-A52Q-01 1 167097215 167097215 T A DUSP27 Silent p.P949P 0.24 TCGA-O2-A52Q-01 1 168698116 168698116 G T DPT Silent p.G99G 0.40 TCGA-O2-A52Q-01 1 175372646 175372646 G T TNR Silent p.P202P 0.31 TCGA-O2-A52Q-01 1 176679146 176679146 A T PAPPA2 Missense_Mutation p.E1162V 0.24 deleterious(0) benign(0.312) TCGA-O2-A52Q-01 1 176993828 176993828 G T ASTN1 Silent p.T387T 0.32 TCGA-O2-A52Q-01 1 177250395 177250395 G T BRINP2 Missense_Mutation p.D695Y 0.38 deleterious(0) possibly_damaging(0.87) TCGA-O2-A52Q-01 1 178482347 178482347 G C TEX35 Missense_Mutation p.L8F 0.06 tolerated_low_confidence(0.05) probably_damaging(0.986) TCGA-O2-A52Q-01 1 183543635 183543635 A T NCF2 Missense_Mutation p.M163K 0.21 tolerated(0.11) benign(0.365) TCGA-O2-A52Q-01 1 185950124 185950124 G A HMCN1 Missense_Mutation p.D861N 0.20 probably_damaging(0.998) TCGA-O2-A52Q-01 1 186313701 186313701 C A TPR Missense_Mutation p.A1075S 0.43 possibly_damaging(0.694) TCGA-O2-A52Q-01 1 196876495 196876495 C A CFHR4 Silent p.T221T 0.15 TCGA-O2-A52Q-01 1 196953159 196953159 G A CFHR5 Missense_Mutation p.D108N 0.22 deleterious(0.02) probably_damaging(0.94) TCGA-O2-A52Q-01 1 197316469 197316469 G T CRB1 Splice_Site p.X283_splice 0.38 TCGA-O2-A52Q-01 1 201982405 201982405 G C ELF3 Missense_Mutation p.E262Q 0.37 deleterious(0.03) possibly_damaging(0.811) TCGA-O2-A52Q-01 1 204006276 204006276 C A LINC00303 Intron 0.43 TCGA-O2-A52Q-01 1 204943878 204943878 C A NFASC Missense_Mutation p.D495E 0.15 deleterious(0.01) probably_damaging(0.986) TCGA-O2-A52Q-01 1 207014395 207014395 C A IL19 Missense_Mutation p.T175N 0.21 tolerated(0.3) probably_damaging(0.972) TCGA-O2-A52Q-01 1 207793386 207793386 C A CR1 Missense_Mutation p.P2410T 0.14 deleterious(0.01) benign(0.253) TCGA-O2-A52Q-01 1 209785192 209785192 T A CAMK1G Missense_Mutation p.L324Q 0.31 tolerated(0.6) benign(0.003) TCGA-O2-A52Q-01 1 210857183 210857183 A G KCNH1 Missense_Mutation p.S804P 0.16 tolerated(0.29) benign(0) TCGA-O2-A52Q-01 1 215759861 215759861 A T KCTD3 Missense_Mutation p.Q217L 0.33 deleterious(0.01) probably_damaging(0.989) TCGA-O2-A52Q-01 1 215824099 215824099 T A USH2A Silent p.T4726T 0.36 TCGA-O2-A52Q-01 1 216405402 216405402 G C USH2A Missense_Mutation p.I962M 0.08 possibly_damaging(0.579) TCGA-O2-A52Q-01 1 216692573 216692573 C T ESRRG Silent p.Q363Q 0.39 TCGA-O2-A52Q-01 1 217975148 217975148 G A SPATA17 Missense_Mutation p.E321K 0.12 tolerated(1) benign(0) TCGA-O2-A52Q-01 1 22028093 22028093 C A USP48 Silent p.V875V 0.41 TCGA-O2-A52Q-01 1 220310213 220310213 G T IARS2 Missense_Mutation p.G670V 0.23 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 1 220310214 220310214 G T IARS2 Silent p.G670G 0.23 TCGA-O2-A52Q-01 1 222902975 222902975 A G BROX Missense_Mutation p.H257R 0.16 tolerated(0.3) possibly_damaging(0.51) TCGA-O2-A52Q-01 1 227935760 227935760 C A SNAP47 Missense_Mutation p.A153D 0.21 tolerated(0.12) benign(0.386) TCGA-O2-A52Q-01 1 228290918 228290918 G C C1orf35 Missense_Mutation p.S4C 0.25 tolerated(0.05) probably_damaging(0.99) TCGA-O2-A52Q-01 1 22903207 22903207 G A EPHA8 Silent p.T219T 0.43 TCGA-O2-A52Q-01 1 233190115 233190115 T A PCNXL2 Missense_Mutation p.D1417V 0.22 deleterious(0) probably_damaging(0.997) TCGA-O2-A52Q-01 1 234744288 234744288 G T IRF2BP2 Nonsense_Mutation p.S318* 0.14 TCGA-O2-A52Q-01 1 236189331 236189331 C A NID1 Nonsense_Mutation p.E617* 0.15 TCGA-O2-A52Q-01 1 236189332 236189332 C A NID1 Missense_Mutation p.Q616H 0.15 deleterious(0.04) benign(0.013) TCGA-O2-A52Q-01 1 236906269 236906269 G A ACTN2 Missense_Mutation p.R394Q 0.35 tolerated(0.29) benign(0.005) TCGA-O2-A52Q-01 1 237167526 237167526 G T MT1HL1 Silent p.I49I 0.40 TCGA-O2-A52Q-01 1 23759751 23759751 C A ASAP3 Missense_Mutation p.K714N 0.47 deleterious(0.03) benign(0.424) TCGA-O2-A52Q-01 1 237947222 237947222 G C RYR2 Silent p.A4070A 0.12 TCGA-O2-A52Q-01 1 237947223 237947223 G T RYR2 Nonsense_Mutation p.E4071* 0.12 TCGA-O2-A52Q-01 1 237947970 237947970 G A RYR2 Missense_Mutation p.E4320K 0.10 probably_damaging(0.996) TCGA-O2-A52Q-01 1 240656227 240656227 C A GREM2 3'UTR 0.53 TCGA-O2-A52Q-01 1 245849482 245849482 C A KIF26B Missense_Mutation p.P1066H 0.26 deleterious(0) unknown(0) TCGA-O2-A52Q-01 1 246093229 246093229 T A SMYD3 Missense_Mutation p.N181I 0.39 deleterious(0) probably_damaging(0.998) TCGA-O2-A52Q-01 1 247835875 247835875 T A OR13G1 Missense_Mutation p.T157S 0.13 deleterious(0.04) possibly_damaging(0.752) TCGA-O2-A52Q-01 1 248059276 248059276 C A OR2W3 Missense_Mutation p.L130M 0.27 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 1 248112182 248112182 C A OR2L8 Nonsense_Mutation p.S8* 0.22 TCGA-O2-A52Q-01 1 248801924 248801924 A T OR2T35 Silent p.S212S 0.24 TCGA-O2-A52Q-01 1 26772909 26772909 G A DHDDS Silent p.T142T 0.13 TCGA-O2-A52Q-01 1 33747277 33747277 C T ZNF362 Missense_Mutation p.P258L 0.26 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 1 34082564 34082564 G A CSMD2 Silent p.H1946H 0.55 TCGA-O2-A52Q-01 1 35334218 35334218 G T DLGAP3 Missense_Mutation p.L825I 0.53 deleterious(0) probably_damaging(0.992) TCGA-O2-A52Q-01 1 35578599 35578599 G A ZMYM1 Missense_Mutation p.E390K 0.40 tolerated_low_confidence(0.08) benign(0.009) TCGA-O2-A52Q-01 1 3644705 3644706 - C TP73 Frame_Shift_Ins p.A336Cfs*31 0.41 TCGA-O2-A52Q-01 1 36755174 36755174 G C THRAP3 Missense_Mutation p.E518D 0.47 tolerated(0.24) probably_damaging(0.969) TCGA-O2-A52Q-01 1 43205629 43205629 C T CLDN19 Missense_Mutation p.A36T 0.32 tolerated(0.07) probably_damaging(0.982) TCGA-O2-A52Q-01 1 43888950 43888950 G A SZT2 Missense_Mutation p.V740M 0.10 deleterious(0.01) probably_damaging(0.976) TCGA-O2-A52Q-01 1 44425961 44425961 A G IPO13 Missense_Mutation p.K690R 0.27 tolerated(0.26) benign(0.001) TCGA-O2-A52Q-01 1 44447030 44447030 C A B4GALT2 Missense_Mutation p.N95K 0.27 tolerated(0.19) probably_damaging(0.986) TCGA-O2-A52Q-01 1 46099239 46099239 C T GPBP1L1 Silent p.K322K 0.25 TCGA-O2-A52Q-01 1 46867808 46867808 C G FAAH Missense_Mutation p.Q81E 0.46 tolerated(1) benign(0.001) TCGA-O2-A52Q-01 1 47403759 47403759 G T CYP4A11 Missense_Mutation p.F82L 0.33 deleterious(0.01) benign(0.292) TCGA-O2-A52Q-01 1 52705192 52705192 G T ZFYVE9 Missense_Mutation p.Q701H 0.33 tolerated(0.05) possibly_damaging(0.631) TCGA-O2-A52Q-01 1 52705193 52705193 G T ZFYVE9 Missense_Mutation p.A702S 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-O2-A52Q-01 1 54606780 54606780 A G CDCP2 Missense_Mutation p.Y252H 0.45 deleterious(0) probably_damaging(0.987) TCGA-O2-A52Q-01 1 55067074 55067074 G T ACOT11 Silent p.R339R 0.28 TCGA-O2-A52Q-01 1 55603565 55603565 C T USP24 Missense_Mutation p.E981K 0.21 deleterious(0.01) possibly_damaging(0.697) TCGA-O2-A52Q-01 1 60359341 60359341 G T CYP2J2 Nonsense_Mutation p.C497* 0.25 TCGA-O2-A52Q-01 1 60491124 60491124 A T C1orf87 Missense_Mutation p.L359Q 0.25 deleterious(0) benign(0.26) TCGA-O2-A52Q-01 1 63867969 63867969 A C ALG6 Missense_Mutation p.D71A 0.27 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 1 65143906 65143906 G T CACHD1 Missense_Mutation p.D1002Y 0.27 deleterious(0.01) probably_damaging(0.921) TCGA-O2-A52Q-01 1 66838170 66838170 C T PDE4B Silent p.L674L 0.32 TCGA-O2-A52Q-01 1 67220450 67220450 C G TCTEX1D1 Missense_Mutation p.R37G 0.37 tolerated(0.11) benign(0.001) TCGA-O2-A52Q-01 1 67560971 67560971 G C C1orf141 Missense_Mutation p.P184A 0.38 deleterious(0.01) possibly_damaging(0.908) TCGA-O2-A52Q-01 1 76190397 76190397 G C ACADM 5'Flank 0.47 TCGA-O2-A52Q-01 1 77333279 77333279 A T ST6GALNAC5 5'UTR 0.29 TCGA-O2-A52Q-01 1 79383588 79383588 C T ELTD1 Missense_Mutation p.G537S 0.36 deleterious(0.02) probably_damaging(1) TCGA-O2-A52Q-01 1 84335602 84335602 G A TTLL7 3'UTR 0.09 TCGA-O2-A52Q-01 1 89585924 89585924 C A GBP2 Silent p.L122L 0.24 TCGA-O2-A52Q-01 1 89734427 89734427 C T GBP5 Silent p.L101L 0.25 TCGA-O2-A52Q-01 1 90050192 90050192 C A LRRC8B Silent p.L661L 0.19 TCGA-O2-A52Q-01 1 91733400 91733400 A T HFM1 Missense_Mutation p.V1262E 0.34 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-O2-A52Q-01 1 92443740 92443740 C A BRDT Missense_Mutation p.Q329K 0.25 tolerated(0.43) benign(0.038) TCGA-O2-A52Q-01 1 94930421 94930421 T C ABCD3 Missense_Mutation p.C80R 0.39 deleterious(0.03) possibly_damaging(0.477) TCGA-O2-A52Q-01 20 13912412 13912412 T C SEL1L2 Silent p.S40S 0.13 TCGA-O2-A52Q-01 20 18393457 18393457 C A DZANK1 Missense_Mutation p.R422I 0.27 tolerated(0.06) benign(0.067) TCGA-O2-A52Q-01 20 19955661 19955661 A G RIN2 Missense_Mutation p.Q380R 0.47 tolerated(0.24) benign(0.004) TCGA-O2-A52Q-01 20 20018137 20018137 C G CRNKL1 Missense_Mutation p.E737Q 0.13 tolerated(0.09) benign(0.016) TCGA-O2-A52Q-01 20 23017249 23017249 C A SSTR4 Missense_Mutation p.R377S 0.36 tolerated_low_confidence(0.51) benign(0.018) TCGA-O2-A52Q-01 20 2411645 2411645 G T TGM6 Missense_Mutation p.G647C 0.44 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 20 25059453 25059453 G C VSX1 Intron 0.14 TCGA-O2-A52Q-01 20 2985793 2985793 G T PTPRA Splice_Site p.X277_splice 0.48 TCGA-O2-A52Q-01 20 3003399 3003399 G C PTPRA Missense_Mutation p.E465Q 0.21 deleterious(0.01) benign(0.009) TCGA-O2-A52Q-01 20 3145312 3145312 C A LZTS3 Missense_Mutation p.V604L 0.37 deleterious(0.01) possibly_damaging(0.897) TCGA-O2-A52Q-01 20 31699293 31699293 C A BPIFB4 3'UTR 0.34 TCGA-O2-A52Q-01 20 31756990 31756990 G A BPIFA2 Silent p.V13V 0.38 TCGA-O2-A52Q-01 20 31828159 31828159 C A BPIFA1 Silent p.S183S 0.39 TCGA-O2-A52Q-01 20 3193827 3193827 C T ITPA Silent p.L27L 0.42 TCGA-O2-A52Q-01 20 3212177 3212177 C A SLC4A11 Silent p.A292A 0.14 TCGA-O2-A52Q-01 20 33345209 33345209 G C NCOA6 Missense_Mutation p.Q448E 0.39 benign(0.276) TCGA-O2-A52Q-01 20 33725810 33725810 T C EDEM2 Splice_Site p.X122_splice 0.40 TCGA-O2-A52Q-01 20 33879995 33879995 A T FAM83C Missense_Mutation p.V38E 0.21 tolerated(0.13) probably_damaging(1) TCGA-O2-A52Q-01 20 34063401 34063401 T A CEP250 Missense_Mutation p.L549Q 0.24 probably_damaging(1) TCGA-O2-A52Q-01 20 36147311 36147311 C A BLCAP 3'UTR 0.41 TCGA-O2-A52Q-01 20 42163485 42163485 G T L3MBTL1 Missense_Mutation p.W554C 0.19 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 20 44684855 44684855 C A SLC12A5 Missense_Mutation p.R975S 0.32 tolerated(0.23) benign(0.002) TCGA-O2-A52Q-01 20 45212304 45212304 G A SLC13A3 Missense_Mutation p.L376F 0.37 deleterious(0) benign(0.392) TCGA-O2-A52Q-01 20 49191087 49191087 G A PTPN1 Missense_Mutation p.E130K 0.20 tolerated(0.07) benign(0.011) TCGA-O2-A52Q-01 20 50407455 50407455 C T SALL4 Missense_Mutation p.G523R 0.38 deleterious(0.01) benign(0.094) TCGA-O2-A52Q-01 20 54575854 54575854 G T CBLN4 Missense_Mutation p.A114E 0.31 deleterious(0) possibly_damaging(0.809) TCGA-O2-A52Q-01 20 58448936 58448936 G T SYCP2 Nonsense_Mutation p.S1177* 0.14 TCGA-O2-A52Q-01 20 60469982 60469982 C T CDH4 Missense_Mutation p.T356I 0.35 tolerated(0.05) benign(0.036) TCGA-O2-A52Q-01 20 60485606 60485606 G T CDH4 Silent p.G439G 0.24 TCGA-O2-A52Q-01 20 60503417 60503417 C G CDH4 Nonsense_Mutation p.Y647* 0.35 TCGA-O2-A52Q-01 20 60791360 60791360 C A HRH3 Missense_Mutation p.R347L 0.32 deleterious(0.01) possibly_damaging(0.908) TCGA-O2-A52Q-01 20 60906088 60906088 C A LAMA5 Missense_Mutation p.S1217I 0.35 probably_damaging(0.979) TCGA-O2-A52Q-01 20 62292737 62292737 C G RTEL1 Silent p.L63L 0.15 TCGA-O2-A52Q-01 20 62293267 62293267 C A RTEL1 Silent p.V122V 0.10 TCGA-O2-A52Q-01 20 62729753 62729753 G T OPRL1 Missense_Mutation p.M238I 0.38 tolerated(0.51) probably_damaging(0.996) TCGA-O2-A52Q-01 20 9498767 9498767 C T LAMP5 Nonsense_Mutation p.Q186* 0.36 TCGA-O2-A52Q-01 21 10951281 10951281 C G TPTE Missense_Mutation p.R144P 0.19 deleterious(0) probably_damaging(0.999) TCGA-O2-A52Q-01 21 11038883 11038883 G C BAGE2 RNA 0.07 TCGA-O2-A52Q-01 21 11039050 11039050 C A BAGE2 RNA 0.06 TCGA-O2-A52Q-01 21 19713741 19713741 G T TMPRSS15 Missense_Mutation p.P518Q 0.22 deleterious(0) possibly_damaging(0.824) TCGA-O2-A52Q-01 21 22804498 22804499 - A NCAM2 Frame_Shift_Ins p.P519Tfs*48 0.23 TCGA-O2-A52Q-01 21 28216877 28216877 G A ADAMTS1 Missense_Mutation p.P133S 0.20 tolerated(0.13) benign(0.026) TCGA-O2-A52Q-01 21 28306971 28306971 G T ADAMTS5 Missense_Mutation p.F501L 0.41 deleterious(0) probably_damaging(0.987) TCGA-O2-A52Q-01 21 30693793 30693793 A T BACH1 Silent p.V64V 0.26 TCGA-O2-A52Q-01 21 31538744 31538744 G T CLDN17 Nonsense_Mutation p.C64* 0.21 TCGA-O2-A52Q-01 21 31654947 31654947 G T KRTAP24-1 Missense_Mutation p.Q102K 0.12 tolerated(1) possibly_damaging(0.621) TCGA-O2-A52Q-01 21 34136728 34136728 C T PAXBP1 Missense_Mutation p.E194K 0.15 deleterious(0.02) benign(0.23) TCGA-O2-A52Q-01 21 34166493 34166493 C G C21orf62 Silent p.L80L 0.11 TCGA-O2-A52Q-01 21 34166494 34166494 A T C21orf62 Missense_Mutation p.L80Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-O2-A52Q-01 21 35254743 35254743 A T ITSN1 Missense_Mutation p.Y1513F 0.41 tolerated(1) benign(0.023) TCGA-O2-A52Q-01 21 35821896 35821896 G T KCNE1 Missense_Mutation p.L13M 0.32 deleterious(0) probably_damaging(0.997) TCGA-O2-A52Q-01 21 43522297 43522297 C T UMODL1 Missense_Mutation p.T403I 0.15 tolerated(0.06) possibly_damaging(0.759) TCGA-O2-A52Q-01 21 45564819 45564819 C T C21orf33 Silent p.L265L 0.21 TCGA-O2-A52Q-01 21 46011293 46011293 C A KRTAP10-6 Missense_Mutation p.C358F 0.17 deleterious(0.02) probably_damaging(0.95) TCGA-O2-A52Q-01 21 46057368 46057368 G A KRTAP10-10 Missense_Mutation p.A12T 0.17 tolerated(0.41) possibly_damaging(0.821) TCGA-O2-A52Q-01 21 46102049 46102049 G A KRTAP12-1 5'UTR 0.23 TCGA-O2-A52Q-01 21 47570342 47570342 G T FTCD Missense_Mutation p.A245E 0.16 deleterious(0) possibly_damaging(0.65) TCGA-O2-A52Q-01 22 17976556 17976556 G A CECR2 Missense_Mutation p.E74K 0.12 deleterious(0.01) possibly_damaging(0.558) TCGA-O2-A52Q-01 22 19494946 19494946 G T CDC45 Missense_Mutation p.D320Y 0.21 deleterious(0) probably_damaging(0.969) TCGA-O2-A52Q-01 22 20760413 20760413 G A ZNF74 Missense_Mutation p.E364K 0.22 deleterious(0) possibly_damaging(0.483) TCGA-O2-A52Q-01 22 21096638 21096638 C A PI4KA Missense_Mutation p.D1207Y 0.22 deleterious(0.03) possibly_damaging(0.635) TCGA-O2-A52Q-01 22 21983966 21983966 G T YDJC Silent p.L83L 0.45 TCGA-O2-A52Q-01 22 22697902 22697902 C A IGLV9-49 Silent p.R64R 0.17 TCGA-O2-A52Q-01 22 22869367 22869367 G T ZNF280A Silent p.V196V 0.36 TCGA-O2-A52Q-01 22 26422625 26422625 G C MYO18B Missense_Mutation p.A2229P 0.28 tolerated(0.28) benign(0.015) TCGA-O2-A52Q-01 22 26422629 26422629 C T MYO18B Missense_Mutation p.S2230F 0.31 deleterious(0.04) possibly_damaging(0.514) TCGA-O2-A52Q-01 22 29611526 29611526 G T EMID1 Missense_Mutation p.V76L 0.33 tolerated(0.31) benign(0.041) TCGA-O2-A52Q-01 22 36708240 36708240 G A MYH9 Silent p.L528L 0.30 TCGA-O2-A52Q-01 22 37914089 37914089 G A CARD10 Missense_Mutation p.R88C 0.38 deleterious(0) possibly_damaging(0.698) TCGA-O2-A52Q-01 22 38086710 38086710 G T NOL12 Missense_Mutation p.A130S 0.18 tolerated(0.49) benign(0.018) TCGA-O2-A52Q-01 22 38119930 38119930 C T TRIOBP Missense_Mutation p.A456V 0.25 tolerated_low_confidence(0.16) benign(0.005) TCGA-O2-A52Q-01 22 40351884 40351884 C A GRAP2 Missense_Mutation p.P47H 0.09 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 22 41489015 41489015 G T EP300 Nonsense_Mutation p.E3* 0.15 TCGA-O2-A52Q-01 22 41726049 41726049 G T ZC3H7B Missense_Mutation p.G156V 0.14 tolerated(0.12) possibly_damaging(0.561) TCGA-O2-A52Q-01 22 41735187 41735187 G T ZC3H7B Missense_Mutation p.D270Y 0.21 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 22 42180420 42180420 C A MEI1 Silent p.L1055L 0.19 TCGA-O2-A52Q-01 22 44319832 44319832 G T PNPLA3 Missense_Mutation p.G14V 0.24 deleterious(0) probably_damaging(0.999) TCGA-O2-A52Q-01 22 44696826 44696826 C A KIAA1644 5'UTR 0.17 TCGA-O2-A52Q-01 22 50470355 50470355 G T TTLL8 Missense_Mutation p.H505Q 0.39 deleterious(0.04) possibly_damaging(0.895) TCGA-O2-A52Q-01 22 50716562 50716562 C G PLXNB2 Missense_Mutation p.R1624P 0.43 deleterious(0.01) probably_damaging(1) TCGA-O2-A52Q-01 2 103274046 103274046 C - SLC9A2 Frame_Shift_Del p.T106Qfs*2 0.29 TCGA-O2-A52Q-01 2 105883818 105883818 T A TGFBRAP1 3'UTR 0.22 TCGA-O2-A52Q-01 2 105885829 105885829 A G TGFBRAP1 Missense_Mutation p.F769S 0.23 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 2 109067532 109067532 A T GCC2 Missense_Mutation p.M38L 0.48 deleterious(0.02) benign(0.006) TCGA-O2-A52Q-01 2 109397785 109397785 C T RANBP2 Missense_Mutation p.T2887I 0.21 tolerated(0.13) possibly_damaging(0.627) TCGA-O2-A52Q-01 2 110259217 110259217 T A SH3RF3 Missense_Mutation p.L873H 0.40 deleterious(0) probably_damaging(0.999) TCGA-O2-A52Q-01 2 113593785 113593785 C T IL1B Missense_Mutation p.A8T 0.11 tolerated(1) benign(0.004) TCGA-O2-A52Q-01 2 113675310 113675310 T C IL37 Missense_Mutation p.C122R 0.15 deleterious(0) probably_damaging(0.999) TCGA-O2-A52Q-01 2 113885165 113885165 C A IL1RN Intron 0.27 TCGA-O2-A52Q-01 2 116599908 116599908 A T DPP10 Missense_Mutation p.E797V 0.31 deleterious(0) possibly_damaging(0.846) TCGA-O2-A52Q-01 2 124783172 124783172 C T CNTNAP5 5'UTR 0.20 TCGA-O2-A52Q-01 2 125262016 125262016 C A CNTNAP5 Missense_Mutation p.L403M 0.12 deleterious(0.01) possibly_damaging(0.512) TCGA-O2-A52Q-01 2 128399752 128399752 G T LIMS2 Missense_Mutation p.R202S 0.20 deleterious(0.02) possibly_damaging(0.839) TCGA-O2-A52Q-01 2 128913077 128913077 G A UGGT1 Missense_Mutation p.D718N 0.28 tolerated(0.1) benign(0.096) TCGA-O2-A52Q-01 2 131520706 131520706 C A AMER3 Missense_Mutation p.P354H 0.26 deleterious(0) probably_damaging(0.994) TCGA-O2-A52Q-01 2 133542490 133542490 C A NCKAP5 Nonsense_Mutation p.E632* 0.45 TCGA-O2-A52Q-01 2 136570396 136570396 C T LCT Missense_Mutation p.R613K 0.31 tolerated(0.9) benign(0.004) TCGA-O2-A52Q-01 2 138434172 138434172 G C THSD7B Missense_Mutation p.M1609I 0.38 deleterious(0) unknown(0) TCGA-O2-A52Q-01 2 140995822 140995822 T G LRP1B Missense_Mutation p.N4487H 0.09 possibly_damaging(0.703) TCGA-O2-A52Q-01 2 141027847 141027847 C G LRP1B Missense_Mutation p.C4404S 0.22 benign(0.152) TCGA-O2-A52Q-01 2 141214157 141214157 C A LRP1B Missense_Mutation p.C3277F 0.28 benign(0.308) TCGA-O2-A52Q-01 2 141747165 141747165 T A LRP1B Missense_Mutation p.R902S 0.36 possibly_damaging(0.899) TCGA-O2-A52Q-01 2 144525592 144525592 A T ARHGAP15 Missense_Mutation p.T427S 0.32 tolerated(0.12) benign(0.102) TCGA-O2-A52Q-01 2 14774578 14774578 G T FAM84A Missense_Mutation p.G159C 0.46 tolerated(0.05) probably_damaging(1) TCGA-O2-A52Q-01 2 152132024 152132024 G A NMI Missense_Mutation p.A203V 0.38 deleterious(0) probably_damaging(0.968) TCGA-O2-A52Q-01 2 152496429 152496429 C A NEB Missense_Mutation p.S2944I 0.24 probably_damaging(0.962) TCGA-O2-A52Q-01 2 152534686 152534686 C A NEB Missense_Mutation p.D1091Y 0.38 probably_damaging(0.942) TCGA-O2-A52Q-01 2 157435628 157435628 A T GPD2 Silent p.A637A 0.14 TCGA-O2-A52Q-01 2 160734868 160734868 C A LY75-CD302 Missense_Mutation p.V581L 0.31 tolerated(0.09) possibly_damaging(0.893) TCGA-O2-A52Q-01 2 162877148 162877148 C A DPP4 Missense_Mutation p.K373N 0.11 tolerated(0.05) probably_damaging(0.996) TCGA-O2-A52Q-01 2 166731241 166731241 C A TTC21B 3'UTR 0.36 TCGA-O2-A52Q-01 2 166929974 166929974 C A SCN1A Missense_Mutation p.S53I 0.28 tolerated(0.44) benign(0.248) TCGA-O2-A52Q-01 2 167262304 167262304 G A SCN7A Missense_Mutation p.T1612I 0.36 deleterious(0.01) possibly_damaging(0.548) TCGA-O2-A52Q-01 2 168102604 168102604 C A XIRP2 Missense_Mutation p.P1568T 0.20 probably_damaging(0.972) TCGA-O2-A52Q-01 2 168104089 168104089 G A XIRP2 Missense_Mutation p.G2063S 0.34 benign(0.135) TCGA-O2-A52Q-01 2 170356118 170356118 G T BBS5 Missense_Mutation p.E268D 0.37 tolerated(0.25) probably_damaging(0.973) TCGA-O2-A52Q-01 2 174068537 174068537 C T MLTK Missense_Mutation p.P228L 0.13 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 2 175300866 175300866 G T GPR155 Missense_Mutation p.P864H 0.30 deleterious_low_confidence(0.01) benign(0.036) TCGA-O2-A52Q-01 2 176981711 176981711 C G HOXD10 Silent p.T50T 0.16 TCGA-O2-A52Q-01 2 179193095 179193095 G C OSBPL6 Missense_Mutation p.G103A 0.25 deleterious(0.01) probably_damaging(1) TCGA-O2-A52Q-01 2 179428972 179428972 T A TTN Missense_Mutation p.E27296V 0.21 TCGA-O2-A52Q-01 2 179469989 179469989 C A TTN Missense_Mutation p.R17972L 0.27 TCGA-O2-A52Q-01 2 179489374 179489374 C A TTN Missense_Mutation p.R14878I 0.21 TCGA-O2-A52Q-01 2 179498189 179498189 A G TTN Silent p.Y14299Y 0.12 TCGA-O2-A52Q-01 2 179593649 179593649 A T TTN Silent p.V6372V 0.28 TCGA-O2-A52Q-01 2 179595303 179595303 C A TTN Missense_Mutation p.S5986I 0.11 TCGA-O2-A52Q-01 2 180819018 180819018 T A CWC22 Missense_Mutation p.T535S 0.32 deleterious(0.01) possibly_damaging(0.472) TCGA-O2-A52Q-01 2 183053762 183053762 A T PDE1A Missense_Mutation p.L400H 0.40 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 2 188223824 188223824 T A CALCRL Missense_Mutation p.Y292F 0.33 tolerated(0.07) benign(0.139) TCGA-O2-A52Q-01 2 189863028 189863028 G T COL3A1 Nonsense_Mutation p.G654* 0.21 TCGA-O2-A52Q-01 2 189863029 189863029 G T COL3A1 Missense_Mutation p.G654V 0.21 unknown(0) TCGA-O2-A52Q-01 2 200245197 200245197 C T SATB2 Missense_Mutation p.E163K 0.21 deleterious(0.05) possibly_damaging(0.816) TCGA-O2-A52Q-01 2 200820957 200820957 G C C2orf47 Missense_Mutation p.E146Q 0.20 tolerated(0.07) possibly_damaging(0.746) TCGA-O2-A52Q-01 2 201485397 201485397 G A AOX1 Missense_Mutation p.E577K 0.24 tolerated(0.09) benign(0.007) TCGA-O2-A52Q-01 2 202496855 202496855 T A TMEM237 Missense_Mutation p.T158S 0.13 tolerated(1) benign(0.002) TCGA-O2-A52Q-01 2 207174408 207174408 C T ZDBF2 Missense_Mutation p.A1719V 0.30 tolerated(1) possibly_damaging(0.499) TCGA-O2-A52Q-01 2 207422172 207422172 C T ADAM23 Missense_Mutation p.H319Y 0.35 tolerated(0.1) possibly_damaging(0.558) TCGA-O2-A52Q-01 2 207652803 207652803 A G FASTKD2 Silent p.A579A 0.32 TCGA-O2-A52Q-01 2 209138443 209138443 G T PIKFYVE Missense_Mutation p.R103L 0.39 tolerated(0.11) benign(0.173) TCGA-O2-A52Q-01 2 212543853 212543853 C A ERBB4 Missense_Mutation p.G516W 0.14 deleterious(0) probably_damaging(0.992) TCGA-O2-A52Q-01 2 217124288 217124288 T A MARCH4 Missense_Mutation p.K327M 0.15 deleterious(0.02) possibly_damaging(0.547) TCGA-O2-A52Q-01 2 217363574 217363574 G T RPL37A 5'UTR 0.43 TCGA-O2-A52Q-01 2 217542902 217542902 G C IGFBP5 Missense_Mutation p.P207R 0.18 tolerated(0.26) benign(0.315) TCGA-O2-A52Q-01 2 218925097 218925097 C T CXCR2P1 RNA 0.22 TCGA-O2-A52Q-01 2 220397174 220397174 C T ASIC4 Silent p.C458C 0.18 TCGA-O2-A52Q-01 2 222428659 222428659 T C EPHA4 Silent p.P205P 0.06 TCGA-O2-A52Q-01 2 223086023 223086023 C A PAX3 Silent p.G292G 0.45 TCGA-O2-A52Q-01 2 223159014 223159014 G T PAX3 Missense_Mutation p.S153Y 0.35 deleterious(0) possibly_damaging(0.9) TCGA-O2-A52Q-01 2 228855730 228855730 T C SPHKAP Missense_Mutation p.N1649D 0.32 tolerated(0.07) possibly_damaging(0.593) TCGA-O2-A52Q-01 2 234545318 234545318 C T UGT1A10 Silent p.L50L 0.15 TCGA-O2-A52Q-01 2 238290002 238290002 C A COL6A3 Missense_Mutation p.A485S 0.36 possibly_damaging(0.714) TCGA-O2-A52Q-01 2 25016140 25016140 G C PTRHD1 Nonsense_Mutation p.S36* 0.32 TCGA-O2-A52Q-01 2 26705382 26705382 G A OTOF Missense_Mutation p.L491F 0.17 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 2 33012155 33012155 C T TTC27 Missense_Mutation p.S646L 0.30 deleterious(0.03) benign(0.009) TCGA-O2-A52Q-01 2 3392433 3392433 A T TRAPPC12 Missense_Mutation p.N347Y 0.30 deleterious(0.03) benign(0.336) TCGA-O2-A52Q-01 2 36764578 36764578 A T CRIM1 Missense_Mutation p.T838S 0.30 deleterious(0.02) probably_damaging(0.987) TCGA-O2-A52Q-01 2 3691647 3691647 A G COLEC11 Missense_Mutation p.N266S 0.41 tolerated(0.19) probably_damaging(0.999) TCGA-O2-A52Q-01 2 37036088 37036088 C A VIT Nonsense_Mutation p.Y621* 0.26 TCGA-O2-A52Q-01 2 38302048 38302048 T G CYP1B1 Missense_Mutation p.S162R 0.64 deleterious(0.04) possibly_damaging(0.857) TCGA-O2-A52Q-01 2 5833472 5833472 G A SOX11 Missense_Mutation p.G207S 0.41 tolerated(0.35) benign(0.022) TCGA-O2-A52Q-01 2 669507 669507 C A TMEM18 3'UTR 0.50 TCGA-O2-A52Q-01 2 68521006 68521006 C T CNRIP1 Silent p.E161E 0.19 TCGA-O2-A52Q-01 2 70933528 70933528 T C ADD2 Missense_Mutation p.T5A 0.14 tolerated(0.29) benign(0) TCGA-O2-A52Q-01 2 71159955 71159955 T A VAX2 Missense_Mutation p.L165Q 0.38 tolerated(0.4) possibly_damaging(0.65) TCGA-O2-A52Q-01 2 71789004 71789004 A G DYSF Missense_Mutation p.H780R 0.29 tolerated(0.32) benign(0.002) TCGA-O2-A52Q-01 2 71795382 71795382 G A DYSF Silent p.T926T 0.38 TCGA-O2-A52Q-01 2 71817352 71817352 T A DYSF Missense_Mutation p.Y1170N 0.16 deleterious(0) probably_damaging(0.997) TCGA-O2-A52Q-01 2 74757145 74757145 G T HTRA2 Silent p.P4P 0.13 TCGA-O2-A52Q-01 2 79363280 79363280 G T REG1P RNA 0.38 TCGA-O2-A52Q-01 2 79878711 79878711 T G CTNNA2 Missense_Mutation p.L10R 0.08 deleterious(0) possibly_damaging(0.851) TCGA-O2-A52Q-01 2 80772197 80772197 C A CTNNA2 Missense_Mutation p.Q461K 0.15 deleterious(0.02) benign(0.194) TCGA-O2-A52Q-01 2 88405966 88405966 G A SMYD1 Silent p.E368E 0.32 TCGA-O2-A52Q-01 2 88826013 88826013 G A TEX37 Missense_Mutation p.E40K 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.908) TCGA-O2-A52Q-01 2 88857267 88857267 A - EIF2AK3 Frame_Shift_Del p.L1113Cfs*10 0.18 TCGA-O2-A52Q-01 2 97427777 97427777 G T CNNM4 Silent p.V347V 0.29 TCGA-O2-A52Q-01 2 98274540 98274540 T A ACTR1B Missense_Mutation p.Q264L 0.34 deleterious(0.01) benign(0.034) TCGA-O2-A52Q-01 2 98409025 98409025 G A TMEM131 Missense_Mutation p.P1323L 0.42 deleterious_low_confidence(0.02) benign(0.002) TCGA-O2-A52Q-01 2 98797615 98797615 C A VWA3B Missense_Mutation p.H417Q 0.20 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 3 101443512 101443512 G C CEP97 5'UTR 0.11 TCGA-O2-A52Q-01 3 101571786 101571786 G T NFKBIZ Missense_Mutation p.D173Y 0.34 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-O2-A52Q-01 3 105400456 105400456 T C CBLB Splice_Site p.X766_splice 0.26 TCGA-O2-A52Q-01 3 108396400 108396400 G T DZIP3 Missense_Mutation p.L946F 0.29 deleterious(0) probably_damaging(0.998) TCGA-O2-A52Q-01 3 109023416 109023416 G A DPPA2 Missense_Mutation p.H254Y 0.32 deleterious(0) benign(0.028) TCGA-O2-A52Q-01 3 112337815 112337815 C T CCDC80 Silent p.K724K 0.31 TCGA-O2-A52Q-01 3 113286514 113286514 C G SIDT1 Missense_Mutation p.Q158E 0.31 tolerated(1) benign(0.001) TCGA-O2-A52Q-01 3 118649052 118649052 G T IGSF11 Silent p.V41V 0.25 TCGA-O2-A52Q-01 3 121134760 121134760 C A STXBP5L Silent p.G1081G 0.30 TCGA-O2-A52Q-01 3 122289429 122289429 C T DTX3L Missense_Mutation p.T688I 0.34 deleterious(0) probably_damaging(0.975) TCGA-O2-A52Q-01 3 138738753 138738753 G T PRR23B Missense_Mutation p.P251T 0.33 deleterious(0.01) possibly_damaging(0.815) TCGA-O2-A52Q-01 3 138739072 138739072 A T PRR23B Silent p.S144S 0.36 TCGA-O2-A52Q-01 3 140401620 140401620 C A TRIM42 Missense_Mutation p.Q220K 0.17 tolerated(0.37) benign(0.297) TCGA-O2-A52Q-01 3 141497492 141497492 G T GRK7 Silent p.P122P 0.16 TCGA-O2-A52Q-01 3 14958754 14958754 A T FGD5 Splice_Site p.X1136_splice 0.22 TCGA-O2-A52Q-01 3 150931207 150931207 G T P2RY14 Missense_Mutation p.Q300K 0.20 tolerated(1) benign(0.004) TCGA-O2-A52Q-01 3 159997109 159997109 G A IFT80 Nonsense_Mutation p.Q570* 0.14 TCGA-O2-A52Q-01 3 160150246 160150246 A G SMC4 Missense_Mutation p.D1158G 0.20 deleterious(0.01) probably_damaging(0.956) TCGA-O2-A52Q-01 3 164697182 164697182 G C SI Missense_Mutation p.L1818V 0.11 tolerated(0.1) benign(0.004) TCGA-O2-A52Q-01 3 164709197 164709197 A T SI Missense_Mutation p.H1684Q 0.36 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 3 167045759 167045761 TTG - ZBBX In_Frame_Del p.N277del 0.36 TCGA-O2-A52Q-01 3 168833720 168833720 G C MECOM Missense_Mutation p.S524C 0.39 deleterious(0.04) benign(0.029) TCGA-O2-A52Q-01 3 168833870 168833870 G A MECOM Missense_Mutation p.S474L 0.34 deleterious(0.01) possibly_damaging(0.86) TCGA-O2-A52Q-01 3 172080450 172080450 T A FNDC3B Silent p.I941I 0.18 TCGA-O2-A52Q-01 3 179399793 179399793 T C USP13 Splice_Site p.X98_splice 0.06 TCGA-O2-A52Q-01 3 183097165 183097165 C A MCF2L2 Silent p.T65T 0.26 TCGA-O2-A52Q-01 3 183639166 183639166 C T ABCC5 Silent p.S1412S 0.07 TCGA-O2-A52Q-01 3 184297495 184297495 C A EPHB3 Missense_Mutation p.R649S 0.14 tolerated(0.8) benign(0.052) TCGA-O2-A52Q-01 3 18457539 18457539 C T SATB1 Missense_Mutation p.D159N 0.25 deleterious(0.01) probably_damaging(0.994) TCGA-O2-A52Q-01 3 186953591 186953591 C A MASP1 Nonsense_Mutation p.E690* 0.18 TCGA-O2-A52Q-01 3 192635618 192635618 C G MB21D2 Silent p.A4A 0.23 TCGA-O2-A52Q-01 3 194080434 194080434 T C LRRC15 Missense_Mutation p.T453A 0.20 tolerated(0.38) benign(0.009) TCGA-O2-A52Q-01 3 195538749 195538749 T A MUC4 5'UTR 0.24 TCGA-O2-A52Q-01 3 196612259 196612259 G T SENP5 Silent p.T69T 0.21 TCGA-O2-A52Q-01 3 197483326 197483326 G T FYTTD1 Missense_Mutation p.G45W 0.22 deleterious(0.05) probably_damaging(0.992) TCGA-O2-A52Q-01 3 32995174 32995174 T A CCR4 Missense_Mutation p.L87H 0.17 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 3 33704960 33704960 C A CLASP2 Missense_Mutation p.G231V 0.27 deleterious(0.01) benign(0.044) TCGA-O2-A52Q-01 3 38738955 38738955 G T SCN10A Missense_Mutation p.P1919Q 0.23 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 3 38797407 38797407 G C SCN10A Missense_Mutation p.H445D 0.20 tolerated(0.34) benign(0.078) TCGA-O2-A52Q-01 3 39225378 39225378 G T XIRP1 3'UTR 0.12 TCGA-O2-A52Q-01 3 39230751 39230751 G T XIRP1 Missense_Mutation p.H62Q 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-O2-A52Q-01 3 40231739 40231739 G T MYRIP Missense_Mutation p.A484S 0.24 tolerated(0.66) benign(0.027) TCGA-O2-A52Q-01 3 42740209 42740209 G A HHATL Silent p.I158I 0.24 TCGA-O2-A52Q-01 3 431004 431004 C A CHL1 Missense_Mutation p.P773T 0.23 deleterious(0.02) benign(0.197) TCGA-O2-A52Q-01 3 44489959 44489959 T A ZNF445 Missense_Mutation p.T402S 0.31 tolerated(0.63) benign(0.292) TCGA-O2-A52Q-01 3 46307386 46307386 C A CCR3 Missense_Mutation p.A267E 0.18 deleterious(0) benign(0.443) TCGA-O2-A52Q-01 3 46501197 46501197 A T LTF Silent p.P52P 0.24 TCGA-O2-A52Q-01 3 48663401 48663401 G T SLC26A6 3'UTR 0.17 TCGA-O2-A52Q-01 3 50294410 50294412 CAA - GNAI2 In_Frame_Del p.N257del 0.21 TCGA-O2-A52Q-01 3 50314110 50314110 G T LSMEM2 5'Flank 0.26 TCGA-O2-A52Q-01 3 51418787 51418787 C A DOCK3 Missense_Mutation p.P1964T 0.19 tolerated_low_confidence(0.16) benign(0.211) TCGA-O2-A52Q-01 3 51430914 51430914 C T RBM15B Missense_Mutation p.P695L 0.22 tolerated(0.11) benign(0.015) TCGA-O2-A52Q-01 3 57312686 57312686 G C ASB14 Missense_Mutation p.Q384E 0.19 tolerated(0.22) probably_damaging(0.999) TCGA-O2-A52Q-01 3 62501756 62501756 G C CADPS Silent p.L853L 0.22 TCGA-O2-A52Q-01 3 62570971 62570971 G A CADPS Missense_Mutation p.P489L 0.16 tolerated(0.08) possibly_damaging(0.713) TCGA-O2-A52Q-01 3 6903413 6903413 C A GRM7 Missense_Mutation p.T113N 0.21 deleterious(0) probably_damaging(0.958) TCGA-O2-A52Q-01 3 69168620 69168620 C G LMOD3 Missense_Mutation p.E296Q 0.20 deleterious(0.01) probably_damaging(0.947) TCGA-O2-A52Q-01 3 7188158 7188158 C G GRM7 Missense_Mutation p.A180G 0.17 deleterious(0.01) benign(0.028) TCGA-O2-A52Q-01 3 73433570 73433570 C A PDZRN3 Missense_Mutation p.R716L 0.27 tolerated(0.38) possibly_damaging(0.52) TCGA-O2-A52Q-01 3 81698969 81698969 C A GBE1 Missense_Mutation p.W178L 0.22 deleterious(0) probably_damaging(0.997) TCGA-O2-A52Q-01 3 8983488 8983488 C A RAD18 Silent p.R89R 0.17 TCGA-O2-A52Q-01 3 9057380 9057380 C G SRGAP3 Missense_Mutation p.D572H 0.10 deleterious(0) probably_damaging(0.999) TCGA-O2-A52Q-01 3 97806629 97806629 G T OR5AC2 Missense_Mutation p.G205C 0.42 deleterious(0) possibly_damaging(0.811) TCGA-O2-A52Q-01 3 97806630 97806630 G T OR5AC2 Missense_Mutation p.G205V 0.42 deleterious(0.01) benign(0.023) TCGA-O2-A52Q-01 3 97806733 97806733 C A OR5AC2 Silent p.A239A 0.10 TCGA-O2-A52Q-01 4 10515119 10515119 C T CLNK Missense_Mutation p.R292K 0.26 tolerated(0.41) benign(0.021) TCGA-O2-A52Q-01 4 1090598 1090598 C A RNF212 Missense_Mutation p.M67I 0.19 tolerated(0.07) possibly_damaging(0.491) TCGA-O2-A52Q-01 4 11401329 11401329 C A HS3ST1 Missense_Mutation p.G101C 0.36 deleterious(0.01) possibly_damaging(0.743) TCGA-O2-A52Q-01 4 115748951 115748951 G T NDST4 3'UTR 0.39 TCGA-O2-A52Q-01 4 115791969 115791969 G T NDST4 Missense_Mutation p.H558Q 0.36 tolerated(0.7) benign(0.001) TCGA-O2-A52Q-01 4 119461542 119461542 G T CEP170P1 Intron 0.41 TCGA-O2-A52Q-01 4 123268764 123268764 G T KIAA1109 Missense_Mutation p.W4320L 0.20 possibly_damaging(0.812) TCGA-O2-A52Q-01 4 134073799 134073799 T C PCDH10 Missense_Mutation p.M835T 0.20 deleterious(0.04) benign(0.263) TCGA-O2-A52Q-01 4 141545513 141545513 C A TBC1D9 Missense_Mutation p.G977C 0.13 tolerated(0.06) benign(0.376) TCGA-O2-A52Q-01 4 143081579 143081579 C G INPP4B Missense_Mutation p.D499H 0.44 tolerated(0.06) benign(0.011) TCGA-O2-A52Q-01 4 144141454 144141454 G C USP38 Missense_Mutation p.E992Q 0.43 deleterious(0.01) probably_damaging(0.952) TCGA-O2-A52Q-01 4 145627694 145627694 A T HHIP Missense_Mutation p.E281D 0.50 deleterious(0) benign(0.083) TCGA-O2-A52Q-01 4 145627812 145627812 G T HHIP Missense_Mutation p.V321F 0.30 deleterious(0) probably_damaging(0.94) TCGA-O2-A52Q-01 4 147110791 147110791 C A LSM6 Missense_Mutation p.Q76K 0.19 tolerated(0.68) benign(0.004) TCGA-O2-A52Q-01 4 154256100 154256100 C G TRIM2 Silent p.V766V 0.12 TCGA-O2-A52Q-01 4 15444523 15444523 C A C1QTNF7 3'UTR 0.42 TCGA-O2-A52Q-01 4 155161964 155161964 C A DCHS2 Missense_Mutation p.G1907C 0.45 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 4 155241540 155241540 C A DCHS2 Nonsense_Mutation p.E1216* 0.35 TCGA-O2-A52Q-01 4 155241759 155241759 C G DCHS2 Missense_Mutation p.D1143H 0.16 deleterious(0.04) possibly_damaging(0.906) TCGA-O2-A52Q-01 4 156775463 156775463 G T ASIC5 Missense_Mutation p.F117L 0.14 tolerated(0.13) possibly_damaging(0.549) TCGA-O2-A52Q-01 4 158284166 158284166 C A GRIA2 Missense_Mutation p.N874K 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.598) TCGA-O2-A52Q-01 4 159529122 159529122 A T RXFP1 Splice_Site p.X155_splice 0.25 TCGA-O2-A52Q-01 4 164393854 164393854 C T TKTL2 Missense_Mutation p.D345N 0.19 deleterious(0) probably_damaging(0.982) TCGA-O2-A52Q-01 4 165962384 165962384 C A TRIM60 Missense_Mutation p.A387E 0.24 tolerated(0.07) probably_damaging(0.966) TCGA-O2-A52Q-01 4 176733166 176733166 A T GPM6A Intron 0.55 TCGA-O2-A52Q-01 4 177032769 177032769 G T WDR17 Missense_Mutation p.G37V 0.24 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 4 177069457 177069457 C G WDR17 Missense_Mutation p.T647S 0.15 tolerated(0.07) probably_damaging(0.997) TCGA-O2-A52Q-01 4 178257318 178257318 C T NEIL3 Missense_Mutation p.S157L 0.27 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 4 17887700 17887700 G A LCORL Missense_Mutation p.S256L 0.27 tolerated(0.25) benign(0.039) TCGA-O2-A52Q-01 4 17963613 17963613 C G LCORL Missense_Mutation p.E115Q 0.10 deleterious(0.04) benign(0.261) TCGA-O2-A52Q-01 4 183245240 183245240 T A TENM3 Missense_Mutation p.Y23N 0.55 deleterious_low_confidence(0.01) possibly_damaging(0.788) TCGA-O2-A52Q-01 4 188924533 188924533 C A ZFP42 Missense_Mutation p.P191H 0.19 deleterious(0.02) probably_damaging(0.986) TCGA-O2-A52Q-01 4 20255551 20255551 C G SLIT2 Missense_Mutation p.T38R 0.43 deleterious(0.01) possibly_damaging(0.46) TCGA-O2-A52Q-01 4 22389755 22389755 C A GPR125 Missense_Mutation p.R1180L 0.36 deleterious(0.01) probably_damaging(0.987) TCGA-O2-A52Q-01 4 23830212 23830212 T A PPARGC1A Missense_Mutation p.S190C 0.22 deleterious(0.01) probably_damaging(0.931) TCGA-O2-A52Q-01 4 2831619 2831619 G A SH3BP2 Missense_Mutation p.R386K 0.42 tolerated_low_confidence(0.2) benign(0.04) TCGA-O2-A52Q-01 4 2831851 2831851 G C SH3BP2 Missense_Mutation p.E463D 0.38 deleterious_low_confidence(0.04) benign(0.019) TCGA-O2-A52Q-01 4 30724694 30724694 G T PCDH7 Silent p.P550P 0.18 TCGA-O2-A52Q-01 4 38933190 38933190 C G FAM114A1 Missense_Mutation p.P427R 0.24 tolerated(0.44) benign(0.042) TCGA-O2-A52Q-01 4 39184084 39184084 C T WDR19 5'UTR 0.38 TCGA-O2-A52Q-01 4 46312235 46312235 C A GABRA2 Missense_Mutation p.D172Y 0.28 deleterious(0) probably_damaging(0.992) TCGA-O2-A52Q-01 4 46737143 46737143 C - COX7B2 Frame_Shift_Del p.A23Qfs*6 0.36 TCGA-O2-A52Q-01 4 47408736 47408736 C G GABRB1 Silent p.T291T 0.46 TCGA-O2-A52Q-01 4 47892693 47892693 C A NFXL1 Missense_Mutation p.D494Y 0.38 deleterious(0) possibly_damaging(0.704) TCGA-O2-A52Q-01 4 55973909 55973909 C A KDR Missense_Mutation p.E469D 0.44 tolerated(0.64) benign(0.027) TCGA-O2-A52Q-01 4 6042413 6042413 C T JAKMIP1 Missense_Mutation p.E710K 0.26 deleterious(0) probably_damaging(0.996) TCGA-O2-A52Q-01 4 65175566 65175566 G A TECRL Missense_Mutation p.T212I 0.49 deleterious(0.01) possibly_damaging(0.82) TCGA-O2-A52Q-01 4 68447041 68447041 G A STAP1 Missense_Mutation p.V128M 0.46 tolerated(0.18) benign(0.042) TCGA-O2-A52Q-01 4 70346538 70346538 G T UGT2B4 Silent p.V467V 0.44 TCGA-O2-A52Q-01 4 70355165 70355165 G T UGT2B4 Missense_Mutation p.P332T 0.33 deleterious(0) probably_damaging(0.992) TCGA-O2-A52Q-01 4 70505155 70505155 T A UGT2A2 Silent p.L68L 0.46 TCGA-O2-A52Q-01 4 73012692 73012693 - A NPFFR2 Intron 0.31 TCGA-O2-A52Q-01 4 73154574 73154574 G T ADAMTS3 Silent p.T981T 0.55 TCGA-O2-A52Q-01 4 74451012 74451012 T C RASSF6 Missense_Mutation p.Y183C 0.39 tolerated(0.06) probably_damaging(0.96) TCGA-O2-A52Q-01 4 83369174 83369174 G T ENOPH1 Missense_Mutation p.Q62H 0.40 deleterious(0) probably_damaging(0.993) TCGA-O2-A52Q-01 4 94436393 94436393 C A GRID2 Missense_Mutation p.T675K 0.45 tolerated(0.24) possibly_damaging(0.578) TCGA-O2-A52Q-01 5 101735379 101735379 T A SLCO6A1 Missense_Mutation p.D565V 0.51 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 5 1073820 1073820 G A SLC12A7 Silent p.G723G 0.42 TCGA-O2-A52Q-01 5 1083876 1083876 G C SLC12A7 Silent p.A371A 0.36 TCGA-O2-A52Q-01 5 109026103 109026103 G T MAN2A1 5'UTR 0.29 TCGA-O2-A52Q-01 5 112384919 112384919 C T MCC Silent p.T842T 0.39 TCGA-O2-A52Q-01 5 118264381 118264381 T G DTWD2 Missense_Mutation p.I150L 0.13 tolerated(0.75) benign(0.06) TCGA-O2-A52Q-01 5 118850720 118850720 A T HSD17B4 Silent p.T519T 0.20 TCGA-O2-A52Q-01 5 120021899 120021899 C A PRR16 Missense_Mutation p.P114H 0.20 tolerated_low_confidence(0.52) possibly_damaging(0.853) TCGA-O2-A52Q-01 5 121297673 121297673 G T SRFBP1 5'UTR 0.19 TCGA-O2-A52Q-01 5 121759272 121759272 C G SNCAIP Silent p.L280L 0.21 TCGA-O2-A52Q-01 5 126790301 126790301 A T MEGF10 Missense_Mutation p.K1008N 0.29 tolerated(0.1) benign(0.084) TCGA-O2-A52Q-01 5 127714575 127714575 C T FBN2 Missense_Mutation p.E538K 0.25 deleterious(0) probably_damaging(0.965) TCGA-O2-A52Q-01 5 128324361 128324361 G T SLC27A6 Missense_Mutation p.G252C 0.31 deleterious(0) probably_damaging(0.999) TCGA-O2-A52Q-01 5 131877504 131877504 C T IL5 Silent p.%3D 0.10 TCGA-O2-A52Q-01 5 132087722 132087722 C T CCNI2 Missense_Mutation p.S280F 0.13 deleterious(0) possibly_damaging(0.897) TCGA-O2-A52Q-01 5 134109392 134109392 G C DDX46 Missense_Mutation p.D152H 0.22 deleterious(0) possibly_damaging(0.753) TCGA-O2-A52Q-01 5 135567221 135567221 T C TRPC7 Missense_Mutation p.K621E 0.37 tolerated(0.24) possibly_damaging(0.824) TCGA-O2-A52Q-01 5 138208952 138208952 G C LRRTM2 Missense_Mutation p.S433C 0.38 deleterious(0) probably_damaging(0.95) TCGA-O2-A52Q-01 5 13841128 13841128 G C DNAH5 Missense_Mutation p.L1866V 0.25 benign(0.364) TCGA-O2-A52Q-01 5 139239475 139239475 C A NRG2 Intron 0.29 TCGA-O2-A52Q-01 5 140182628 140182628 G T PCDHA3 Missense_Mutation p.G616C 0.18 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-O2-A52Q-01 5 140202608 140202608 C A PCDHA5 Missense_Mutation p.S416R 0.18 tolerated_low_confidence(0.29) benign(0.113) TCGA-O2-A52Q-01 5 140208662 140208662 C A PCDHA6 Missense_Mutation p.P329H 0.08 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-O2-A52Q-01 5 140235680 140235680 C A PCDHA10 Nonsense_Mutation p.S16* 0.61 TCGA-O2-A52Q-01 5 140237562 140237562 C T PCDHA10 Silent p.R643R 0.71 TCGA-O2-A52Q-01 5 140432966 140432966 G T PCDHB1 Missense_Mutation p.M637I 0.18 tolerated(0.49) benign(0.035) TCGA-O2-A52Q-01 5 140502754 140502754 C G PCDHB4 Missense_Mutation p.L392V 0.12 deleterious(0) probably_damaging(0.978) TCGA-O2-A52Q-01 5 140515042 140515042 C A PCDHB5 Missense_Mutation p.P9Q 0.32 tolerated_low_confidence(0.41) benign(0.004) TCGA-O2-A52Q-01 5 140554495 140554495 C A PCDHB7 Silent p.A693A 0.10 TCGA-O2-A52Q-01 5 140554497 140554497 C A PCDHB7 Nonsense_Mutation p.S694* 0.10 TCGA-O2-A52Q-01 5 140558676 140558676 C A PCDHB8 Missense_Mutation p.T354N 0.12 tolerated_low_confidence(0.15) benign(0.011) TCGA-O2-A52Q-01 5 140573625 140573625 C T PCDHB10 Silent p.L500L 0.08 TCGA-O2-A52Q-01 5 140615466 140615466 A G PCDHB18 RNA 0.36 TCGA-O2-A52Q-01 5 140767457 140767457 G C PCDHGB4 Silent p.G2G 0.44 TCGA-O2-A52Q-01 5 140810518 140810518 C T PCDHGA12 Silent p.V64V 0.16 TCGA-O2-A52Q-01 5 141044639 141044639 G T ARAP3 Missense_Mutation p.Q884K 0.24 deleterious(0.02) probably_damaging(0.926) TCGA-O2-A52Q-01 5 14462872 14462872 G T TRIO Silent p.R1835R 0.27 TCGA-O2-A52Q-01 5 145894651 145894651 G T GPR151 Missense_Mutation p.N342K 0.27 tolerated(0.34) benign(0.118) TCGA-O2-A52Q-01 5 147549330 147549330 C T SPINK14 Missense_Mutation p.S12F 0.16 tolerated(0.31) benign(0) TCGA-O2-A52Q-01 5 147889211 147889211 G C HTR4 Missense_Mutation p.T295S 0.35 tolerated(0.25) possibly_damaging(0.542) TCGA-O2-A52Q-01 5 147928300 147928300 A C HTR4 Missense_Mutation p.V95G 0.48 deleterious(0) probably_damaging(0.982) TCGA-O2-A52Q-01 5 148388560 148388560 C A SH3TC2 Missense_Mutation p.G1111V 0.20 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 5 150856257 150856257 G T SLC36A1 Missense_Mutation p.G310V 0.33 deleterious(0) probably_damaging(0.992) TCGA-O2-A52Q-01 5 156186544 156186544 T A SGCD 3'UTR 0.19 TCGA-O2-A52Q-01 5 156923984 156923984 G T ADAM19 Silent p.T504T 0.47 TCGA-O2-A52Q-01 5 156926603 156926603 C A ADAM19 Missense_Mutation p.G459V 0.15 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 5 157182070 157182070 G T LSM11 Missense_Mutation p.R294M 0.32 deleterious(0.02) possibly_damaging(0.79) TCGA-O2-A52Q-01 5 158140043 158140043 C A EBF1 Missense_Mutation p.G435V 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.735) TCGA-O2-A52Q-01 5 160033908 160033908 C A ATP10B Missense_Mutation p.Q1008H 0.17 tolerated(0.3) probably_damaging(0.943) TCGA-O2-A52Q-01 5 160033996 160033996 G T ATP10B Missense_Mutation p.P979H 0.43 tolerated(0.06) benign(0.056) TCGA-O2-A52Q-01 5 161119176 161119176 T C GABRA6 Silent p.A352A 0.33 TCGA-O2-A52Q-01 5 161128598 161128598 C A GABRA6 Missense_Mutation p.A394E 0.24 tolerated(0.96) benign(0.002) TCGA-O2-A52Q-01 5 161300308 161300308 G T GABRA1 Silent p.R147R 0.46 TCGA-O2-A52Q-01 5 168176605 168176605 T A SLIT3 Missense_Mutation p.H670L 0.27 deleterious(0) benign(0.151) TCGA-O2-A52Q-01 5 169127031 169127031 C T DOCK2 Silent p.T382T 0.33 TCGA-O2-A52Q-01 5 169230202 169230202 C A DOCK2 Missense_Mutation p.Q899K 0.43 tolerated(1) benign(0.001) TCGA-O2-A52Q-01 5 169532955 169532955 C T FOXI1 5'UTR 0.12 TCGA-O2-A52Q-01 5 169533189 169533189 G T FOXI1 Silent p.L76L 0.20 TCGA-O2-A52Q-01 5 170736590 170736590 G T TLX3 Missense_Mutation p.G74V 0.22 deleterious(0.05) probably_damaging(0.998) TCGA-O2-A52Q-01 5 173359486 173359486 G C CPEB4 Missense_Mutation p.S414T 0.15 deleterious_low_confidence(0.05) benign(0.017) TCGA-O2-A52Q-01 5 174869293 174869293 G T DRD1 Silent p.V270V 0.15 TCGA-O2-A52Q-01 5 176721268 176721268 C A NSD1 Missense_Mutation p.A2300D 0.37 deleterious_low_confidence(0) benign(0.282) TCGA-O2-A52Q-01 5 179251262 179251262 A T SQSTM1 Silent p.G204G 0.21 TCGA-O2-A52Q-01 5 19721520 19721520 G T CDH18 Missense_Mutation p.N193K 0.32 deleterious(0) probably_damaging(0.994) TCGA-O2-A52Q-01 5 23510038 23510038 C A PRDM9 Missense_Mutation p.A68D 0.10 deleterious_low_confidence(0) benign(0.213) TCGA-O2-A52Q-01 5 24537648 24537648 C G CDH10 Missense_Mutation p.A123P 0.23 tolerated(0.43) probably_damaging(0.981) TCGA-O2-A52Q-01 5 26885873 26885873 G A CDH9 Nonsense_Mutation p.Q578* 0.26 TCGA-O2-A52Q-01 5 3600737 3600737 C A IRX1 Missense_Mutation p.P443T 0.30 tolerated(0.1) probably_damaging(0.981) TCGA-O2-A52Q-01 5 38967454 38967454 T C RICTOR Missense_Mutation p.H379R 0.09 deleterious(0.01) benign(0.424) TCGA-O2-A52Q-01 5 40853567 40853567 C T CARD6 Silent p.L711L 0.34 TCGA-O2-A52Q-01 5 41004474 41004474 G A MROH2B Silent p.L1390L 0.14 TCGA-O2-A52Q-01 5 41061714 41061714 C A MROH2B Missense_Mutation p.W191C 0.20 deleterious(0) benign(0) TCGA-O2-A52Q-01 5 42689115 42689115 C A GHR Missense_Mutation p.T87N 0.44 tolerated(0.39) possibly_damaging(0.665) TCGA-O2-A52Q-01 5 45267224 45267224 C T HCN1 Missense_Mutation p.E584K 0.17 deleterious(0) probably_damaging(0.975) TCGA-O2-A52Q-01 5 52204822 52204822 G A ITGA1 Missense_Mutation p.G517E 0.20 deleterious(0.01) probably_damaging(0.991) TCGA-O2-A52Q-01 5 5239925 5239925 G T ADAMTS16 Missense_Mutation p.D804Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-O2-A52Q-01 5 53409241 53409241 C A ARL15 Splice_Site p.X85_splice 0.38 TCGA-O2-A52Q-01 5 61887470 61887470 G T IPO11 Silent p.T923T 0.09 TCGA-O2-A52Q-01 5 64314062 64314062 G C CWC27 Missense_Mutation p.E445Q 0.40 deleterious(0.01) possibly_damaging(0.894) TCGA-O2-A52Q-01 5 66440548 66440548 G C MAST4 Missense_Mutation p.D928H 0.45 probably_damaging(0.987) TCGA-O2-A52Q-01 5 68470122 68470122 C T CCNB1 Silent p.V197V 0.37 TCGA-O2-A52Q-01 5 72161462 72161462 G T TNPO1 Missense_Mutation p.A168S 0.15 tolerated(0.6) benign(0.013) TCGA-O2-A52Q-01 5 72469248 72469248 A T TMEM174 Missense_Mutation p.I60F 0.21 deleterious(0.02) probably_damaging(0.996) TCGA-O2-A52Q-01 5 7414715 7414715 A G ADCY2 Missense_Mutation p.I80M 0.16 tolerated(0.22) benign(0.04) TCGA-O2-A52Q-01 5 76028608 76028608 G T F2R Missense_Mutation p.M186I 0.41 deleterious(0) probably_damaging(0.919) TCGA-O2-A52Q-01 5 76640726 76640726 A C PDE8B Silent p.I282I 0.30 TCGA-O2-A52Q-01 5 79960974 79960974 G A MSH3 Missense_Mutation p.C124Y 0.20 tolerated_low_confidence(0.16) benign(0.004) TCGA-O2-A52Q-01 5 81613966 81613966 G T ATP6AP1L Silent p.R174R 0.15 TCGA-O2-A52Q-01 5 82815351 82815351 C A VCAN Missense_Mutation p.T409K 0.28 deleterious(0.01) benign(0.28) TCGA-O2-A52Q-01 5 82837250 82837250 A T VCAN Missense_Mutation p.T2810S 0.19 deleterious(0.02) benign(0.354) TCGA-O2-A52Q-01 5 83433160 83433160 C A EDIL3 Missense_Mutation p.C123F 0.11 tolerated(0.07) probably_damaging(0.922) TCGA-O2-A52Q-01 5 83680182 83680182 G T EDIL3 Nonsense_Mutation p.S4* 0.11 TCGA-O2-A52Q-01 5 94224590 94224590 C A MCTP1 Missense_Mutation p.V643F 0.37 tolerated(0.63) probably_damaging(0.989) TCGA-O2-A52Q-01 5 94891049 94891049 G T ARSK Nonsense_Mutation p.E23* 0.15 TCGA-O2-A52Q-01 6 102307316 102307316 A T GRIK2 Missense_Mutation p.Q491L 0.40 tolerated(0.58) benign(0.002) TCGA-O2-A52Q-01 6 116938104 116938104 A T RSPH4A Silent p.A106A 0.40 TCGA-O2-A52Q-01 6 117244371 117244371 C A RFX6 Missense_Mutation p.N513K 0.42 tolerated(0.07) benign(0.418) TCGA-O2-A52Q-01 6 123318803 123318803 G T CLVS2 5'UTR 0.46 TCGA-O2-A52Q-01 6 127797146 127797146 C G SOGA3 Silent p.A675A 0.47 TCGA-O2-A52Q-01 6 131191123 131191123 C A EPB41L2 Silent p.V729V 0.61 TCGA-O2-A52Q-01 6 132030029 132030029 G T CTAGE9 Missense_Mutation p.T710K 0.64 deleterious(0.01) benign(0.363) TCGA-O2-A52Q-01 6 133100533 133100533 T A SLC18B1 Silent p.P223P 0.55 TCGA-O2-A52Q-01 6 136597377 136597377 C T BCLAF1 Missense_Mutation p.R429Q 0.10 tolerated(0.36) benign(0.417) TCGA-O2-A52Q-01 6 1390761 1390761 G A FOXF2 Silent p.P193P 0.37 TCGA-O2-A52Q-01 6 139222118 139222118 C T ECT2L Silent p.F816F 0.61 TCGA-O2-A52Q-01 6 144507778 144507778 T A STX11 Missense_Mutation p.L5Q 0.58 deleterious(0) probably_damaging(0.994) TCGA-O2-A52Q-01 6 150342176 150342176 T A RAET1L Nonsense_Mutation p.R166* 0.58 TCGA-O2-A52Q-01 6 160969590 160969590 C T LPA Missense_Mutation p.R1692Q 0.50 tolerated(0.38) benign(0.014) TCGA-O2-A52Q-01 6 167585753 167585753 G T TCP10L2 Missense_Mutation p.D41Y 0.49 deleterious(0) probably_damaging(0.991) TCGA-O2-A52Q-01 6 170140299 170140299 A T TCTE3 Missense_Mutation p.F193L 0.46 deleterious(0.03) possibly_damaging(0.589) TCGA-O2-A52Q-01 6 20402595 20402595 C T E2F3 Silent p.F44F 0.36 TCGA-O2-A52Q-01 6 24547304 24547304 C G KIAA0319 3'UTR 0.26 TCGA-O2-A52Q-01 6 25983765 25983765 G T TRIM38 Silent p.L416L 0.57 TCGA-O2-A52Q-01 6 26370714 26370714 G T BTN3A2 Missense_Mutation p.G200C 0.54 deleterious(0.02) possibly_damaging(0.473) TCGA-O2-A52Q-01 6 26501966 26501966 G A BTN1A1 Silent p.V76V 0.25 TCGA-O2-A52Q-01 6 27776266 27776266 G A HIST1H2AI Silent p.E93E 0.24 TCGA-O2-A52Q-01 6 27799148 27799148 T C HIST1H4K Missense_Mutation p.E53G 0.23 deleterious(0.02) benign(0.236) TCGA-O2-A52Q-01 6 28093562 28093562 C A ZSCAN16 Missense_Mutation p.T114K 0.39 deleterious(0) benign(0.304) TCGA-O2-A52Q-01 6 28541407 28541407 T C SCAND3 Silent p.E753E 0.33 TCGA-O2-A52Q-01 6 29574912 29574912 G A GABBR1 Silent p.F692F 0.28 TCGA-O2-A52Q-01 6 30590608 30590608 G A MRPS18B Splice_Site p.X119_splice 0.25 TCGA-O2-A52Q-01 6 30955103 30955103 C T MUC21 Missense_Mutation p.S384F 0.10 deleterious(0.01) unknown(0) TCGA-O2-A52Q-01 6 31779260 31779260 C A HSPA1L Missense_Mutation p.G164C 0.61 deleterious_low_confidence(0) probably_damaging(1) TCGA-O2-A52Q-01 6 32006564 32006564 G T CYP21A2 Missense_Mutation p.A90S 0.28 deleterious(0.05) probably_damaging(0.913) TCGA-O2-A52Q-01 6 33239402 33239402 C G VPS52 Silent p.R17R 0.14 TCGA-O2-A52Q-01 6 41904406 41904406 G T CCND3 Missense_Mutation p.S201Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-O2-A52Q-01 6 49754534 49754534 G C PGK2 Missense_Mutation p.R123G 0.53 deleterious(0) probably_damaging(0.999) TCGA-O2-A52Q-01 6 50808011 50808011 G T TFAP2B Splice_Site p.X361_splice 0.45 TCGA-O2-A52Q-01 6 54804749 54804749 A T FAM83B Missense_Mutation p.D327V 0.25 deleterious(0) probably_damaging(0.921) TCGA-O2-A52Q-01 6 55924041 55924041 C A COL21A1 Splice_Site p.X870_splice 0.64 TCGA-O2-A52Q-01 6 57012178 57012178 C G ZNF451 Missense_Mutation p.S432C 0.15 deleterious(0.03) benign(0.013) TCGA-O2-A52Q-01 6 70890203 70890203 G T COL19A1 Splice_Site p.X890_splice 0.47 TCGA-O2-A52Q-01 6 72011801 72011801 C A OGFRL1 3'UTR 0.27 TCGA-O2-A52Q-01 6 72011803 72011803 G T OGFRL1 3'UTR 0.27 TCGA-O2-A52Q-01 6 73902323 73902323 C G KCNQ5 Nonsense_Mutation p.S601* 0.44 TCGA-O2-A52Q-01 6 74519828 74519828 T A CD109 Silent p.S1159S 0.68 TCGA-O2-A52Q-01 6 80741252 80741252 G A TTK Silent p.Q530Q 0.46 TCGA-O2-A52Q-01 6 84233918 84233918 G T PRSS35 Missense_Mutation p.R253L 0.50 deleterious(0) probably_damaging(0.999) TCGA-O2-A52Q-01 6 85448214 85448214 C A TBX18 Splice_Site p.X367_splice 0.41 TCGA-O2-A52Q-01 6 88366695 88366695 C G ORC3 Missense_Mutation p.Q531E 0.41 tolerated(0.07) probably_damaging(0.96) TCGA-O2-A52Q-01 7 100490943 100490943 A T ACHE Missense_Mutation p.L304H 0.40 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 7 103557602 103557602 C A RELN Missense_Mutation p.G86V 0.19 deleterious(0) benign(0.324) TCGA-O2-A52Q-01 7 103557603 103557603 C A RELN Missense_Mutation p.G86C 0.19 deleterious(0) probably_damaging(0.922) TCGA-O2-A52Q-01 7 105732309 105732309 G A SYPL1 Missense_Mutation p.P241L 0.49 deleterious(0.01) probably_damaging(0.972) TCGA-O2-A52Q-01 7 107708479 107708479 C A LAMB4 Missense_Mutation p.G810W 0.26 deleterious(0) probably_damaging(0.999) TCGA-O2-A52Q-01 7 113558338 113558338 C A PPP1R3A Silent p.P238P 0.23 TCGA-O2-A52Q-01 7 11418714 11418714 A G THSD7A Missense_Mutation p.L1595P 0.29 deleterious(0) probably_damaging(0.999) TCGA-O2-A52Q-01 7 114299666 114299666 G T FOXP2 Nonsense_Mutation p.E554* 0.15 TCGA-O2-A52Q-01 7 11441496 11441496 C A THSD7A Missense_Mutation p.R1446I 0.43 deleterious(0) probably_damaging(0.993) TCGA-O2-A52Q-01 7 11521470 11521470 C T THSD7A Silent p.T654T 0.15 TCGA-O2-A52Q-01 7 117180302 117180302 A G CFTR Missense_Mutation p.I340V 0.49 tolerated(0.26) benign(0.172) TCGA-O2-A52Q-01 7 121608185 121608185 G T PTPRZ1 Splice_Site p.X102_splice 0.33 TCGA-O2-A52Q-01 7 121651222 121651222 C T PTPRZ1 Silent p.L708L 0.17 TCGA-O2-A52Q-01 7 122808439 122808439 C A SLC13A1 Nonsense_Mutation p.E217* 0.50 TCGA-O2-A52Q-01 7 123101571 123101571 G A IQUB Missense_Mutation p.S616L 0.08 deleterious(0.04) benign(0.062) TCGA-O2-A52Q-01 7 126746613 126746613 C A GRM8 Missense_Mutation p.A222S 0.21 deleterious(0.03) probably_damaging(0.998) TCGA-O2-A52Q-01 7 126746614 126746614 C A GRM8 Silent p.L221L 0.21 TCGA-O2-A52Q-01 7 128475523 128475523 C A FLNC Missense_Mutation p.L166I 0.44 deleterious(0) probably_damaging(0.998) TCGA-O2-A52Q-01 7 129691220 129691220 C A ZC3HC1 5'UTR 0.40 TCGA-O2-A52Q-01 7 130418278 130418278 G T KLF14 Missense_Mutation p.H195N 0.12 deleterious(0) probably_damaging(0.979) TCGA-O2-A52Q-01 7 131195677 131195677 G A PODXL Missense_Mutation p.H206Y 0.35 tolerated(0.13) benign(0.158) TCGA-O2-A52Q-01 7 132070053 132070053 A T PLXNA4 Intron 0.11 TCGA-O2-A52Q-01 7 137148269 137148269 C A DGKI Missense_Mutation p.D909Y 0.31 deleterious(0.02) benign(0.002) TCGA-O2-A52Q-01 7 139799803 139799803 C G KDM7A Silent p.L553L 0.19 TCGA-O2-A52Q-01 7 142001001 142001001 C A TRBV2 5'UTR 0.13 TCGA-O2-A52Q-01 7 142021155 142021155 C T TRBV5-1 Silent p.I45I 0.49 TCGA-O2-A52Q-01 7 142124384 142124384 G T TRBV6-8 Missense_Mutation p.L32M 0.49 tolerated(0.08) benign(0.208) TCGA-O2-A52Q-01 7 142144038 142144038 G T TRBV6-7 Missense_Mutation p.A16E 0.06 deleterious(0.01) probably_damaging(0.973) TCGA-O2-A52Q-01 7 142180928 142180928 C A TRBV6-5 Missense_Mutation p.C8F 0.46 tolerated(0.24) possibly_damaging(0.768) TCGA-O2-A52Q-01 7 142423486 142423486 C A TRBV27 Missense_Mutation p.H48N 0.45 TCGA-O2-A52Q-01 7 142428696 142428696 T A TRBV28 Missense_Mutation p.V19E 0.32 tolerated(0.08) benign(0.115) TCGA-O2-A52Q-01 7 142659363 142659363 C G KEL 5'UTR 0.36 TCGA-O2-A52Q-01 7 142919691 142919691 C A TAS2R40 Missense_Mutation p.P174T 0.40 tolerated(0.07) benign(0.223) TCGA-O2-A52Q-01 7 143657036 143657036 C T OR2F1 5'UTR 0.26 TCGA-O2-A52Q-01 7 144060519 144060519 G T ARHGEF5 Missense_Mutation p.D253Y 0.14 deleterious(0) possibly_damaging(0.732) TCGA-O2-A52Q-01 7 14758278 14758278 G C DGKB Missense_Mutation p.P119A 0.24 tolerated(0.86) benign(0.002) TCGA-O2-A52Q-01 7 149516590 149516590 T A SSPO RNA 0.15 TCGA-O2-A52Q-01 7 150649530 150649530 C T KCNH2 Missense_Mutation p.G514S 0.21 tolerated(0.14) probably_damaging(0.954) TCGA-O2-A52Q-01 7 150761725 150761725 G C SLC4A2 Silent p.P110P 0.18 TCGA-O2-A52Q-01 7 15405146 15405146 G C AGMO Missense_Mutation p.A419G 0.46 tolerated(0.05) benign(0.131) TCGA-O2-A52Q-01 7 154172104 154172104 G C DPP6 Missense_Mutation p.E147Q 0.06 tolerated(0.23) benign(0.073) TCGA-O2-A52Q-01 7 15458264 15458264 G C AGMO Silent p.P176P 0.20 TCGA-O2-A52Q-01 7 154863188 154863188 G T HTR5A Missense_Mutation p.Q193H 0.45 tolerated(0.32) benign(0.111) TCGA-O2-A52Q-01 7 156798565 156798565 C T MNX1 Silent p.V285V 0.43 TCGA-O2-A52Q-01 7 157396750 157396750 G T PTPRN2 Missense_Mutation p.L788M 0.43 tolerated(0.2) probably_damaging(0.91) TCGA-O2-A52Q-01 7 157475458 157475458 G A PTPRN2 Silent p.L654L 0.13 TCGA-O2-A52Q-01 7 16505189 16505189 A C SOSTDC1 Missense_Mutation p.H35Q 0.06 tolerated(0.21) benign(0.046) TCGA-O2-A52Q-01 7 18875197 18875197 A T HDAC9 Silent p.G858G 0.40 TCGA-O2-A52Q-01 7 21631193 21631193 G T DNAH11 Nonsense_Mutation p.E889* 0.48 TCGA-O2-A52Q-01 7 21737782 21737782 G A DNAH11 Missense_Mutation p.R2051Q 0.07 benign(0.104) TCGA-O2-A52Q-01 7 27284746 27284746 C T EVX1 Silent p.G169G 0.18 TCGA-O2-A52Q-01 7 31378583 31378583 G T NEUROD6 Missense_Mutation p.N100K 0.16 deleterious(0) probably_damaging(0.952) TCGA-O2-A52Q-01 7 31692425 31692425 T G CCDC129 Intron 0.09 TCGA-O2-A52Q-01 7 38305165 38305165 G A TRGC1 Missense_Mutation p.P39L 0.18 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 7 4002302 4002302 C A SDK1 Silent p.P416P 0.42 TCGA-O2-A52Q-01 7 4002474 4002474 G T SDK1 Missense_Mutation p.D474Y 0.46 deleterious(0.04) benign(0.285) TCGA-O2-A52Q-01 7 41729729 41729729 C G INHBA Missense_Mutation p.G267A 0.12 tolerated_low_confidence(0.61) benign(0.001) TCGA-O2-A52Q-01 7 42018349 42018349 T A GLI3 Splice_Site p.X500_splice 0.42 TCGA-O2-A52Q-01 7 42064882 42064882 G T GLI3 Missense_Mutation p.P446Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-O2-A52Q-01 7 43992117 43992117 C T UBE2D4 Intron 0.20 TCGA-O2-A52Q-01 7 45144059 45144059 G T TBRG4 Intron 0.15 TCGA-O2-A52Q-01 7 48352828 48352828 G T ABCA13 Missense_Mutation p.Q3227H 0.42 probably_damaging(0.94) TCGA-O2-A52Q-01 7 51096339 51096339 C T COBL Silent p.Q818Q 0.47 TCGA-O2-A52Q-01 7 55565345 55565345 C T VOPP1 Missense_Mutation p.C51Y 0.34 deleterious(0) probably_damaging(0.992) TCGA-O2-A52Q-01 7 6370547 6370547 C A FAM220A Missense_Mutation p.G80V 0.38 tolerated(0.43) possibly_damaging(0.509) TCGA-O2-A52Q-01 7 73535363 73535363 C A LIMK1 Missense_Mutation p.L589M 0.44 tolerated(0.09) possibly_damaging(0.884) TCGA-O2-A52Q-01 7 7412846 7412847 - C COL28A1 Frame_Shift_Ins p.V898Sfs*7 0.27 TCGA-O2-A52Q-01 7 76940693 76940693 C T GSAP Silent p.A849A 0.11 TCGA-O2-A52Q-01 7 78256475 78256475 C T MAGI2 Missense_Mutation p.E167K 0.10 deleterious(0) probably_damaging(0.998) TCGA-O2-A52Q-01 7 8110721 8110721 C T GLCCI1 Silent p.S379S 0.08 TCGA-O2-A52Q-01 7 81334767 81334767 A T HGF Missense_Mutation p.V650E 0.38 deleterious(0.02) possibly_damaging(0.634) TCGA-O2-A52Q-01 7 81662163 81662163 C T CACNA2D1 Missense_Mutation p.G365R 0.12 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 7 82545159 82545160 - T PCLO Frame_Shift_Ins p.L4048Hfs*3 0.25 TCGA-O2-A52Q-01 7 84751106 84751106 G T SEMA3D Silent p.V34V 0.43 TCGA-O2-A52Q-01 7 8475398 8475398 G T NXPH1 Splice_Site p.X18_splice 0.46 TCGA-O2-A52Q-01 7 86556190 86556190 C A KIAA1324L Nonsense_Mutation p.E378* 0.36 TCGA-O2-A52Q-01 7 87175267 87175267 C A ABCB1 Missense_Mutation p.G600V 0.42 tolerated(0.14) possibly_damaging(0.645) TCGA-O2-A52Q-01 7 87530089 87530089 G A DBF4 Missense_Mutation p.D274N 0.25 tolerated(0.81) benign(0.365) TCGA-O2-A52Q-01 7 87778300 87778300 T C ADAM22 Silent p.P498P 0.17 TCGA-O2-A52Q-01 7 88389367 88389367 G T ZNF804B Missense_Mutation p.G26V 0.36 deleterious(0.05) probably_damaging(0.999) TCGA-O2-A52Q-01 7 92730474 92730474 C A SAMD9 3'UTR 0.54 TCGA-O2-A52Q-01 7 92844752 92844752 C A HEPACAM2 Missense_Mutation p.S226I 0.41 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 7 94173776 94173776 G A CASD1 Silent p.Q470Q 0.10 TCGA-O2-A52Q-01 7 99802345 99802345 G C STAG3 Missense_Mutation p.L966F 0.16 deleterious(0) probably_damaging(0.995) TCGA-O2-A52Q-01 8 100123364 100123364 G C VPS13B Missense_Mutation p.D207H 0.56 deleterious(0) probably_damaging(0.953) TCGA-O2-A52Q-01 8 100790908 100790908 A T VPS13B Splice_Site p.X2502_splice 0.51 TCGA-O2-A52Q-01 8 101016328 101016328 T C RGS22 Splice_Site p.X819_splice 0.25 TCGA-O2-A52Q-01 8 104897688 104897688 C A RIMS2 Missense_Mutation p.D287E 0.13 tolerated_low_confidence(1) benign(0.001) TCGA-O2-A52Q-01 8 106815539 106815539 T A ZFPM2 Missense_Mutation p.S1077T 0.13 tolerated(0.75) benign(0.002) TCGA-O2-A52Q-01 8 113259296 113259296 G T CSMD3 Missense_Mutation p.T3392N 0.47 deleterious(0) benign(0.145) TCGA-O2-A52Q-01 8 113275903 113275903 T C CSMD3 Missense_Mutation p.N3276S 0.11 tolerated(0.05) benign(0.137) TCGA-O2-A52Q-01 8 113275949 113275949 G T CSMD3 Missense_Mutation p.P3261T 0.54 tolerated(0.11) possibly_damaging(0.515) TCGA-O2-A52Q-01 8 113504816 113504816 C A CSMD3 Missense_Mutation p.C1727F 0.50 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 8 113871465 113871465 G - CSMD3 Frame_Shift_Del p.P555Qfs*27 0.19 TCGA-O2-A52Q-01 8 11703270 11703270 C A CTSB Missense_Mutation p.M274I 0.33 tolerated(0.39) benign(0.004) TCGA-O2-A52Q-01 8 120594733 120594733 G T ENPP2 Silent p.P603P 0.50 TCGA-O2-A52Q-01 8 121471536 121471536 G A MTBP Missense_Mutation p.D277N 0.11 tolerated(0.34) benign(0.005) TCGA-O2-A52Q-01 8 122626574 122626574 G T HAS2 Silent p.L478L 0.43 TCGA-O2-A52Q-01 8 124346167 124346167 C G ATAD2 Missense_Mutation p.Q1143H 0.26 tolerated(0.15) benign(0.002) TCGA-O2-A52Q-01 8 125072763 125072763 G T FER1L6 Intron 0.46 TCGA-O2-A52Q-01 8 130778036 130778036 T C GSDMC Silent p.K136K 0.62 TCGA-O2-A52Q-01 8 131812793 131812793 G T ADCY8 Missense_Mutation p.A980D 0.49 tolerated(0.6) possibly_damaging(0.801) TCGA-O2-A52Q-01 8 132996402 132996402 A G EFR3A Missense_Mutation p.Y531C 0.15 deleterious(0.02) benign(0.333) TCGA-O2-A52Q-01 8 139144712 139144712 C A FAM135B 3'UTR 0.18 TCGA-O2-A52Q-01 8 144681905 144681905 G T TIGD5 Missense_Mutation p.G611V 0.69 deleterious(0) possibly_damaging(0.459) TCGA-O2-A52Q-01 8 144696373 144696373 C G TSTA3 Missense_Mutation p.W208C 0.13 tolerated(0.08) benign(0.111) TCGA-O2-A52Q-01 8 144803273 144803273 C G MAPK15 Missense_Mutation p.Q341E 0.08 tolerated(1) benign(0.437) TCGA-O2-A52Q-01 8 144891136 144891136 C A SCRIB Missense_Mutation p.E586D 0.54 benign(0.372) TCGA-O2-A52Q-01 8 145947652 145947652 C G ZNF251 Missense_Mutation p.E465Q 0.52 tolerated(0.06) benign(0.406) TCGA-O2-A52Q-01 8 20110543 20110543 C A LZTS1 Missense_Mutation p.R300L 0.12 tolerated(0.06) benign(0.153) TCGA-O2-A52Q-01 8 26623529 26623529 C A ADRA1A Intron 0.29 TCGA-O2-A52Q-01 8 28600668 28600668 C G EXTL3 Missense_Mutation p.I829M 0.42 tolerated(1) benign(0.173) TCGA-O2-A52Q-01 8 38021313 38021313 C G LSM1 Missense_Mutation p.E93Q 0.43 tolerated(0.05) possibly_damaging(0.873) TCGA-O2-A52Q-01 8 41552208 41552208 C G ANK1 Missense_Mutation p.G1118R 0.39 deleterious(0) possibly_damaging(0.907) TCGA-O2-A52Q-01 8 51571194 51571194 G A SNTG1 Missense_Mutation p.V337I 0.60 deleterious(0.03) benign(0.003) TCGA-O2-A52Q-01 8 51571220 51571220 C G SNTG1 Silent p.L345L 0.64 TCGA-O2-A52Q-01 8 52233356 52233356 G T PXDNL Missense_Mutation p.H1416Q 0.70 tolerated(0.45) benign(0.003) TCGA-O2-A52Q-01 8 57221560 57221560 C A SDR16C5 Missense_Mutation p.M164I 0.53 deleterious(0) probably_damaging(0.996) TCGA-O2-A52Q-01 8 59720705 59720705 C T TOX Missense_Mutation p.D506N 0.08 deleterious(0) benign(0.321) TCGA-O2-A52Q-01 8 68028237 68028237 C T CSPP1 Missense_Mutation p.P454L 0.54 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 8 69017486 69017486 C T PREX2 Intron 0.06 TCGA-O2-A52Q-01 8 72942149 72942149 C A TRPA1 Missense_Mutation p.R975M 0.57 deleterious(0) probably_damaging(0.999) TCGA-O2-A52Q-01 8 72950238 72950238 C T TRPA1 Missense_Mutation p.A789T 0.37 deleterious(0.01) benign(0.049) TCGA-O2-A52Q-01 8 73848208 73848208 C A KCNB2 Silent p.S206S 0.13 TCGA-O2-A52Q-01 8 73939226 73939226 G C TERF1 Missense_Mutation p.D276H 0.12 deleterious(0) possibly_damaging(0.823) TCGA-O2-A52Q-01 8 75737551 75737551 G T PI15 Missense_Mutation p.V23F 0.56 tolerated(0.26) benign(0.139) TCGA-O2-A52Q-01 8 77616976 77616976 C A ZFHX4 Missense_Mutation p.A218E 0.17 possibly_damaging(0.765) TCGA-O2-A52Q-01 8 77617062 77617062 G T ZFHX4 Missense_Mutation p.A247S 0.27 possibly_damaging(0.567) TCGA-O2-A52Q-01 8 77764414 77764414 G T ZFHX4 Missense_Mutation p.D1753Y 0.51 probably_damaging(0.934) TCGA-O2-A52Q-01 8 77764955 77764955 A T ZFHX4 Missense_Mutation p.K1933M 0.49 benign(0.086) TCGA-O2-A52Q-01 8 77776466 77776466 C T ZFHX4 Nonsense_Mutation p.Q3506* 0.17 TCGA-O2-A52Q-01 8 80677886 80677886 C G HEY1 Missense_Mutation p.R155P 0.05 deleterious(0) probably_damaging(0.936) TCGA-O2-A52Q-01 8 85441646 85441646 G T RALYL Silent p.T43T 0.14 TCGA-O2-A52Q-01 8 87242206 87242206 A T SLC7A13 Missense_Mutation p.L101M 0.43 tolerated(0.06) possibly_damaging(0.507) TCGA-O2-A52Q-01 8 87474018 87474019 AA - WWP1 Frame_Shift_Del p.K872Vfs*4 0.13 TCGA-O2-A52Q-01 8 87638214 87638214 G A CNGB3 Silent p.F525F 0.08 TCGA-O2-A52Q-01 8 87638223 87638223 G A CNGB3 Silent p.V522V 0.08 TCGA-O2-A52Q-01 8 88885044 88885044 G A DCAF4L2 Missense_Mutation p.R386W 0.06 deleterious(0.01) possibly_damaging(0.836) TCGA-O2-A52Q-01 8 88885130 88885130 G T DCAF4L2 Missense_Mutation p.P357H 0.13 deleterious(0) probably_damaging(0.95) TCGA-O2-A52Q-01 8 91013784 91013784 C T DECR1 Missense_Mutation p.R22W 0.60 deleterious_low_confidence(0.01) benign(0.306) TCGA-O2-A52Q-01 8 92007790 92007790 C G TMEM55A 3'UTR 0.52 TCGA-O2-A52Q-01 8 94935176 94935176 G T PDP1 Missense_Mutation p.G322C 0.15 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 8 97263285 97263285 C G MTERFD1 Missense_Mutation p.A176P 0.50 tolerated(0.33) probably_damaging(0.985) TCGA-O2-A52Q-01 8 99168326 99168326 A T POP1 Silent p.A702A 0.16 TCGA-O2-A52Q-01 9 100672707 100672707 G A C9orf156 Nonsense_Mutation p.R201* 0.22 TCGA-O2-A52Q-01 9 101829240 101829240 C A COL15A1 Missense_Mutation p.A1243D 0.47 deleterious(0.04) possibly_damaging(0.526) TCGA-O2-A52Q-01 9 104133565 104133565 C A BAAT Missense_Mutation p.G41V 0.52 deleterious(0) probably_damaging(0.982) TCGA-O2-A52Q-01 9 104385694 104385694 G A GRIN3A Silent p.D840D 0.34 TCGA-O2-A52Q-01 9 105757669 105757669 C A CYLC2 Missense_Mutation p.L3I 0.29 tolerated(0.81) benign(0.097) TCGA-O2-A52Q-01 9 107267229 107267229 G T OR13F1 Missense_Mutation p.S229I 0.50 deleterious(0.02) possibly_damaging(0.548) TCGA-O2-A52Q-01 9 113530097 113530097 C T MUSK Intron 0.50 TCGA-O2-A52Q-01 9 114411991 114411991 A G DNAJC25 Missense_Mutation p.I250V 0.43 tolerated(0.8) benign(0.001) TCGA-O2-A52Q-01 9 116929967 116929967 A T COL27A1 Splice_Site p.X45_splice 0.43 TCGA-O2-A52Q-01 9 117848284 117848284 C A TNC Missense_Mutation p.G576C 0.57 deleterious(0) probably_damaging(0.993) TCGA-O2-A52Q-01 9 125273144 125273144 G C OR1J2 Missense_Mutation p.E22Q 0.09 tolerated_low_confidence(0.05) benign(0.126) TCGA-O2-A52Q-01 9 131711476 131711476 G C RP11-101E3.5 Missense_Mutation p.R35T 0.43 deleterious(0) probably_damaging(0.993) TCGA-O2-A52Q-01 9 137716679 137716679 C T COL5A1 Silent p.L1644L 0.37 TCGA-O2-A52Q-01 9 138379794 138379794 C A PPP1R26 Silent p.T1146T 0.49 TCGA-O2-A52Q-01 9 138590929 138590929 G T SOHLH1 Silent p.R37R 0.41 TCGA-O2-A52Q-01 9 139357528 139357528 C A SEC16A Missense_Mutation p.W1568C 0.48 deleterious(0) probably_damaging(0.999) TCGA-O2-A52Q-01 9 19358103 19358103 G C DENND4C Missense_Mutation p.R1653P 0.27 deleterious(0.02) probably_damaging(1) TCGA-O2-A52Q-01 9 19380216 19380216 G A RPS6 5'UTR 0.50 TCGA-O2-A52Q-01 9 2084096 2084096 C T SMARCA2 Missense_Mutation p.A809V 0.50 possibly_damaging(0.787) TCGA-O2-A52Q-01 9 35558472 35558472 G C RUSC2 Missense_Mutation p.K1083N 0.45 deleterious(0) probably_damaging(0.999) TCGA-O2-A52Q-01 9 35616678 35616678 T C CD72 Missense_Mutation p.T91A 0.40 tolerated(1) benign(0) TCGA-O2-A52Q-01 9 35736229 35736229 A G CREB3 Silent p.L234L 0.45 TCGA-O2-A52Q-01 9 39118143 39118143 C A CNTNAP3 Missense_Mutation p.D732Y 0.18 deleterious(0.01) probably_damaging(0.967) TCGA-O2-A52Q-01 9 39178163 39178163 G C CNTNAP3 Missense_Mutation p.L245V 0.39 tolerated(0.07) benign(0.119) TCGA-O2-A52Q-01 9 4635394 4635394 C T SPATA6L Intron 0.45 TCGA-O2-A52Q-01 9 71006570 71006570 A C PGM5 Missense_Mutation p.Y273S 0.60 deleterious(0.03) probably_damaging(0.949) TCGA-O2-A52Q-01 9 77377810 77377810 T C TRPM6 Silent p.A1259A 0.51 TCGA-O2-A52Q-01 9 79117489 79117489 G T GCNT1 Missense_Mutation p.Q64H 0.40 tolerated(0.08) benign(0.001) TCGA-O2-A52Q-01 9 79117490 79117490 G T GCNT1 Missense_Mutation p.G65C 0.39 deleterious(0) probably_damaging(0.98) TCGA-O2-A52Q-01 9 84199219 84199219 G A TLE1 Missense_Mutation p.S736F 0.33 deleterious(0) probably_damaging(0.999) TCGA-O2-A52Q-01 9 91930178 91930179 TC - CKS2 Frame_Shift_Del p.L52Rfs*9 0.32 TCGA-O2-A52Q-01 X 10153173 10153173 A G CLCN4 Missense_Mutation p.D34G 0.58 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 X 102339653 102339653 G T NXF3 Missense_Mutation p.P63T 0.51 tolerated(0.27) benign(0.002) TCGA-O2-A52Q-01 X 102529259 102529259 G C TCEAL5 Missense_Mutation p.S78C 0.50 tolerated(0.1) probably_damaging(0.928) TCGA-O2-A52Q-01 X 102864347 102864347 G A TCEAL3 Missense_Mutation p.D119N 0.48 tolerated(0.09) possibly_damaging(0.805) TCGA-O2-A52Q-01 X 105279123 105279123 C G SERPINA7 Missense_Mutation p.W292C 0.13 deleterious(0) probably_damaging(1) TCGA-O2-A52Q-01 X 107834811 107834811 G T COL4A5 Missense_Mutation p.G454C 0.42 unknown(0) TCGA-O2-A52Q-01 X 107834812 107834812 G T COL4A5 Missense_Mutation p.G454V 0.42 unknown(0) TCGA-O2-A52Q-01 X 107976625 107976625 G A IRS4 Missense_Mutation p.R984C 0.41 tolerated(0.06) unknown(0) TCGA-O2-A52Q-01 X 111698925 111698925 C G ZCCHC16 3'UTR 0.41 TCGA-O2-A52Q-01 X 118151569 118151569 C A LONRF3 Silent p.L732L 0.50 TCGA-O2-A52Q-01 X 118221385 118221385 C G KIAA1210 Missense_Mutation p.D1270H 0.35 tolerated(0.25) possibly_damaging(0.895) TCGA-O2-A52Q-01 X 119005192 119005192 C T RNF113A Missense_Mutation p.D129N 0.48 deleterious(0.01) probably_damaging(0.972) TCGA-O2-A52Q-01 X 1321371 1321371 C A CRLF2 Silent p.S128S 0.43 TCGA-O2-A52Q-01 X 134987470 134987470 G C SAGE1 Missense_Mutation p.D125H 0.45 tolerated(0.18) probably_damaging(0.965) TCGA-O2-A52Q-01 X 140984483 140984483 C T MAGEC3 Intron 0.46 TCGA-O2-A52Q-01 X 141291046 141291046 C T MAGEC2 Missense_Mutation p.C243Y 0.50 tolerated(0.22) benign(0.029) TCGA-O2-A52Q-01 X 147088283 147088283 G T FMR1NB Missense_Mutation p.E153D 0.38 deleterious(0.03) benign(0.388) TCGA-O2-A52Q-01 X 148039922 148039922 C A AFF2 Missense_Mutation p.T875K 0.16 tolerated(0.79) benign(0.055) TCGA-O2-A52Q-01 X 151130965 151130965 C G GABRE Missense_Mutation p.E165Q 0.17 tolerated(0.16) probably_damaging(0.996) TCGA-O2-A52Q-01 X 151130968 151130968 G T GABRE Missense_Mutation p.H164N 0.17 tolerated(0.31) benign(0.018) TCGA-O2-A52Q-01 X 151560705 151560705 C A GABRA3 Intron 0.09 TCGA-O2-A52Q-01 X 151899813 151899813 C A MAGEA12 3'UTR 0.13 TCGA-O2-A52Q-01 X 151909173 151909173 G A CSAG1 Missense_Mutation p.V68I 0.32 tolerated_low_confidence(0.62) benign(0.001) TCGA-O2-A52Q-01 X 152226454 152226454 G T PNMA3 Nonsense_Mutation p.E348* 0.13 TCGA-O2-A52Q-01 X 152226553 152226553 C AA PNMA3 Frame_Shift_Ins p.Q381Kfs*36 0.11 TCGA-O2-A52Q-01 X 152835153 152835153 C A ATP2B3 Intron 0.16 TCGA-O2-A52Q-01 X 153069677 153069677 G T PDZD4 Missense_Mutation p.P481T 0.23 deleterious(0) probably_damaging(0.988) TCGA-O2-A52Q-01 X 153141250 153141250 G C L1CAM Missense_Mutation p.C14W 0.45 tolerated_low_confidence(0.06) benign(0.011) TCGA-O2-A52Q-01 X 153667357 153667357 C G GDI1 Missense_Mutation p.L87V 0.19 deleterious(0.01) probably_damaging(0.98) TCGA-O2-A52Q-01 X 153925414 153925414 C A GAB3 Missense_Mutation p.V474L 0.15 tolerated(0.13) benign(0.176) TCGA-O2-A52Q-01 X 18238937 18238937 C A BEND2 5'UTR 0.52 TCGA-O2-A52Q-01 X 23898967 23898967 C A APOO Missense_Mutation p.D38Y 0.55 deleterious(0) possibly_damaging(0.841) TCGA-O2-A52Q-01 X 26211947 26211947 C A MAGEB6 5'UTR 0.45 TCGA-O2-A52Q-01 X 30236690 30236690 C T MAGEB2 Intron 0.44 TCGA-O2-A52Q-01 X 30872348 30872348 T A TAB3 Silent p.A478A 0.54 TCGA-O2-A52Q-01 X 3242143 3242143 G T MXRA5 Missense_Mutation p.P528Q 0.43 tolerated(0.68) benign(0.002) TCGA-O2-A52Q-01 X 38009116 38009116 T A SRPX Missense_Mutation p.S415C 0.44 deleterious(0) possibly_damaging(0.907) TCGA-O2-A52Q-01 X 49236841 49236841 G C GAGE2B Missense_Mutation p.R4P 0.52 probably_damaging(0.999) TCGA-O2-A52Q-01 X 51150375 51150375 T A CXorf67 Silent p.P169P 0.33 TCGA-O2-A52Q-01 X 54784492 54784492 G C ITIH6 Nonsense_Mutation p.S672* 0.34 TCGA-O2-A52Q-01 X 54785238 54785238 G C ITIH6 Silent p.S423S 0.50 TCGA-O2-A52Q-01 X 5811551 5811551 T A NLGN4X Missense_Mutation p.K586N 0.42 deleterious(0) probably_damaging(0.998) TCGA-O2-A52Q-01 X 6069301 6069301 T G NLGN4X Silent p.P69P 0.45 TCGA-O2-A52Q-01 X 6069500 6069500 C A NLGN4X Missense_Mutation p.R3L 0.45 tolerated_low_confidence(0.08) benign(0.003) TCGA-O2-A52Q-01 X 65476133 65476133 C A HEPH Missense_Mutation p.L1007I 0.42 tolerated(0.38) possibly_damaging(0.672) TCGA-O2-A52Q-01 X 65822565 65822565 C T EDA2R Missense_Mutation p.V143M 0.38 tolerated(0.36) benign(0.026) TCGA-O2-A52Q-01 X 75649943 75649943 G A MAGEE1 Silent p.L540L 0.52 TCGA-O2-A52Q-01 X 79951446 79951446 G A BRWD3 Nonsense_Mutation p.Q1038* 0.21 TCGA-O2-A52Q-01 X 83129289 83129289 G A CYLC1 Missense_Mutation p.D525N 0.56 tolerated(0.08) possibly_damaging(0.699) TCGA-O2-A52Q-01 X 86068217 86068217 T G DACH2 Missense_Mutation p.Y492D 0.50 tolerated(0.21) benign(0.005) TCGA-O2-A52Q-01 X 91133218 91133218 C G PCDH11X Missense_Mutation p.T660S 0.45 tolerated(0.28) probably_damaging(0.999) TCGA-O2-A52Q-01 X 99662822 99662822 G A PCDH19 Silent p.I258I 0.46 TCGA-O2-A52S-01 10 101293137 101293137 G A NKX2-3 Silent p.G83G 0.32 TCGA-O2-A52S-01 10 101716060 101716060 C A DNMBP Nonsense_Mutation p.E391* 0.32 TCGA-O2-A52S-01 10 101969548 101969548 T A CHUK Splice_Site p.X312_splice 0.56 TCGA-O2-A52S-01 10 104573043 104573043 C T WBP1L Silent p.N349N 0.33 TCGA-O2-A52S-01 10 104592318 104592318 G A CYP17A1 Silent p.L363L 0.29 TCGA-O2-A52S-01 10 108380283 108380283 A C SORCS1 Missense_Mutation p.V900G 0.34 tolerated(0.05) probably_damaging(0.993) TCGA-O2-A52S-01 10 112769045 112769045 C T SHOC2 Missense_Mutation p.H442Y 0.36 deleterious(0.05) benign(0.005) TCGA-O2-A52S-01 10 118957195 118957195 T C KCNK18 Missense_Mutation p.C66R 0.44 tolerated(0.15) benign(0.006) TCGA-O2-A52S-01 10 119043812 119043812 T C PDZD8 Missense_Mutation p.K811R 0.44 tolerated(0.42) probably_damaging(0.997) TCGA-O2-A52S-01 10 14563278 14563278 C G FAM107B Missense_Mutation p.E278Q 0.42 tolerated(0.06) probably_damaging(0.997) TCGA-O2-A52S-01 10 30315092 30315092 C G KIAA1462 Missense_Mutation p.E1329Q 0.64 deleterious(0.01) probably_damaging(0.951) TCGA-O2-A52S-01 10 38120724 38120724 T A ZNF248 Missense_Mutation p.Y520F 0.51 tolerated(0.19) probably_damaging(0.994) TCGA-O2-A52S-01 10 55955513 55955513 G T PCDH15 Missense_Mutation p.A412E 0.37 deleterious(0.04) possibly_damaging(0.493) TCGA-O2-A52S-01 10 96731914 96731914 A G CYP2C9 Silent p.A291A 0.29 TCGA-O2-A52S-01 11 104970117 104970117 T A CARD17 Missense_Mutation p.Q102H 0.50 tolerated(0.14) benign(0.01) TCGA-O2-A52S-01 11 105623792 105623792 C T GRIA4 Silent p.S111S 0.08 TCGA-O2-A52S-01 11 1215771 1215771 C T MUC5AC RNA 0.16 TCGA-O2-A52S-01 11 123810769 123810769 G T OR4D5 Missense_Mutation p.W149L 0.56 deleterious(0) probably_damaging(0.996) TCGA-O2-A52S-01 11 123886306 123886306 G C OR10G4 Missense_Mutation p.A9P 0.72 deleterious(0.02) benign(0.001) TCGA-O2-A52S-01 11 123893744 123893744 G C OR10G9 Missense_Mutation p.A9P 0.10 deleterious(0.02) benign(0.001) TCGA-O2-A52S-01 11 1248621 1248621 T A MUC5B Nonsense_Mutation p.Y220* 0.38 TCGA-O2-A52S-01 11 125330433 125330433 C A FEZ1 Missense_Mutation p.A210S 0.57 tolerated(0.21) benign(0.089) TCGA-O2-A52S-01 11 125330434 125330434 C A FEZ1 Missense_Mutation p.Q209H 0.57 tolerated(0.28) benign(0.002) TCGA-O2-A52S-01 11 1273610 1273610 C A MUC5B Nonsense_Mutation p.C4967* 0.40 TCGA-O2-A52S-01 11 1273611 1273611 C G MUC5B Missense_Mutation p.H4968D 0.40 unknown(0) TCGA-O2-A52S-01 11 128807693 128807693 C A TP53AIP1 Silent p.A7A 0.50 TCGA-O2-A52S-01 11 14990196 14990196 T C CALCA 3'UTR 0.23 TCGA-O2-A52S-01 11 1651762 1651762 T A KRTAP5-5 Missense_Mutation p.V231E 0.24 deleterious_low_confidence(0) unknown(0) TCGA-O2-A52S-01 11 18017412 18017412 C T SERGEF Missense_Mutation p.G185R 0.31 deleterious(0) possibly_damaging(0.887) TCGA-O2-A52S-01 11 18159302 18159302 G T MRGPRX3 Missense_Mutation p.V185F 0.18 deleterious(0) benign(0.007) TCGA-O2-A52S-01 11 26463547 26463547 C T ANO3 Silent p.S43S 0.27 TCGA-O2-A52S-01 11 40136670 40136670 T C LRRC4C Silent p.G391G 0.24 TCGA-O2-A52S-01 11 4661467 4661467 G A OR51D1 Silent p.L149L 0.19 TCGA-O2-A52S-01 11 47595133 47595133 G C KBTBD4 Missense_Mutation p.N318K 0.40 deleterious(0.03) benign(0.39) TCGA-O2-A52S-01 11 55032660 55032660 G C TRIM48 Missense_Mutation p.G110A 0.73 tolerated(0.2) benign(0.316) TCGA-O2-A52S-01 11 5530600 5530600 T A UBQLN3 Silent p.L63L 0.30 TCGA-O2-A52S-01 11 55418458 55418458 G C OR4S2 Missense_Mutation p.V27L 0.46 tolerated(0.1) benign(0.009) TCGA-O2-A52S-01 11 55658729 55658729 G A TRIM51 Missense_Mutation p.C327Y 0.58 tolerated(0.91) benign(0.009) TCGA-O2-A52S-01 11 5878795 5878795 C A OR52E8 Silent p.L46L 0.49 TCGA-O2-A52S-01 11 59224488 59224488 C A OR4D6 Missense_Mutation p.R19S 0.27 tolerated(0.18) benign(0.017) TCGA-O2-A52S-01 11 59480942 59480942 G C OR10V1 Missense_Mutation p.A126G 0.21 deleterious(0) probably_damaging(1) TCGA-O2-A52S-01 11 59578239 59578239 C A MRPL16 5'UTR 0.32 TCGA-O2-A52S-01 11 60154239 60154239 A G MS4A7 Missense_Mutation p.K111R 0.35 deleterious(0.04) probably_damaging(0.942) TCGA-O2-A52S-01 11 66613679 66613679 G T RCE1 3'UTR 0.24 TCGA-O2-A52S-01 11 67379393 67379393 G A NDUFV1 Missense_Mutation p.R369H 0.48 deleterious_low_confidence(0) probably_damaging(1) TCGA-O2-A52S-01 11 67925835 67925835 C T SUV420H1 Missense_Mutation p.G660S 0.42 tolerated(0.18) benign(0.002) TCGA-O2-A52S-01 11 70208521 70208521 G T PPFIA1 Missense_Mutation p.R931M 0.05 deleterious(0) probably_damaging(1) TCGA-O2-A52S-01 11 7022539 7022539 G T ZNF214 Missense_Mutation p.S125R 0.05 tolerated(0.2) benign(0.02) TCGA-O2-A52S-01 11 77618825 77618825 C T INTS4 Missense_Mutation p.E652K 0.17 tolerated(0.18) benign(0.003) TCGA-O2-A52S-01 11 77690145 77690145 G A INTS4 Missense_Mutation p.S123F 0.20 deleterious(0) benign(0.069) TCGA-O2-A52S-01 11 88583222 88583222 G A GRM5 Nonsense_Mutation p.Q255* 0.48 TCGA-O2-A52S-01 11 89536884 89536884 G T TRIM49 Silent p.T163T 0.16 TCGA-O2-A52S-01 12 105289085 105289085 C T SLC41A2 Nonsense_Mutation p.W234* 0.24 TCGA-O2-A52S-01 12 108626513 108626513 C G WSCD2 Missense_Mutation p.R329G 0.34 deleterious(0) benign(0.27) TCGA-O2-A52S-01 12 108954864 108954864 C T SART3 Missense_Mutation p.D23N 0.36 deleterious_low_confidence(0.01) benign(0.004) TCGA-O2-A52S-01 12 111855956 111855956 G T SH2B3 Missense_Mutation p.G3W 0.28 deleterious(0) unknown(0) TCGA-O2-A52S-01 12 112942562 112942562 C T PTPN11 Silent p.F592F 0.24 TCGA-O2-A52S-01 12 120530907 120530907 G A CCDC64 Missense_Mutation p.G555E 0.43 tolerated(0.12) benign(0.032) TCGA-O2-A52S-01 12 123058840 123058840 T C KNTC1 Silent p.N765N 0.32 TCGA-O2-A52S-01 12 132393500 132393500 G T ULK1 Missense_Mutation p.G183V 0.32 deleterious(0) probably_damaging(1) TCGA-O2-A52S-01 12 133236034 133236034 C T POLE Missense_Mutation p.R1041Q 0.08 deleterious(0) probably_damaging(0.91) TCGA-O2-A52S-01 12 14613600 14613600 C G ATF7IP Missense_Mutation p.S777C 0.33 deleterious_low_confidence(0) unknown(0) TCGA-O2-A52S-01 12 20832982 20832982 G T PDE3A Missense_Mutation p.R1068M 0.28 deleterious(0) possibly_damaging(0.85) TCGA-O2-A52S-01 12 21032394 21032394 C A SLCO1B3 Missense_Mutation p.A387E 0.33 deleterious(0) probably_damaging(0.93) TCGA-O2-A52S-01 12 21207524 21207524 T G SLCO1B7 Missense_Mutation p.F499V 0.23 deleterious(0.03) benign(0.251) TCGA-O2-A52S-01 12 29494738 29494738 C T ERGIC2 Missense_Mutation p.G334R 0.30 tolerated(0.31) benign(0.008) TCGA-O2-A52S-01 12 3768745 3768745 C T EFCAB4B Silent p.E249E 0.35 TCGA-O2-A52S-01 12 40013102 40013102 A G ABCD2 Missense_Mutation p.W106R 0.37 deleterious(0) benign(0.218) TCGA-O2-A52S-01 12 40760815 40760816 - A LRRK2 Frame_Shift_Ins p.N2468Kfs*14 0.27 TCGA-O2-A52S-01 12 4736116 4736116 G A AKAP3 Missense_Mutation p.S651F 0.26 deleterious(0) possibly_damaging(0.882) TCGA-O2-A52S-01 12 49438644 49438644 C A KMT2D Nonsense_Mutation p.G1616* 0.31 TCGA-O2-A52S-01 12 49446157 49446157 C A KMT2D Nonsense_Mutation p.E437* 0.31 TCGA-O2-A52S-01 12 50452647 50452649 TCT - ASIC1 In_Frame_Del p.F34del 0.44 TCGA-O2-A52S-01 12 53233028 53233028 T A KRT78 Missense_Mutation p.I478F 0.33 tolerated(0.18) benign(0.091) TCGA-O2-A52S-01 12 57677771 57677771 G T R3HDM2 Missense_Mutation p.S322Y 0.43 tolerated(1) possibly_damaging(0.498) TCGA-O2-A52S-01 12 58002405 58002405 G C DTX3 Missense_Mutation p.A285P 0.41 deleterious(0) probably_damaging(0.997) TCGA-O2-A52S-01 12 58005664 58005664 G A ARHGEF25 Intron 0.43 TCGA-O2-A52S-01 12 64505702 64505702 T G SRGAP1 Missense_Mutation p.F694V 0.32 deleterious(0) probably_damaging(0.986) TCGA-O2-A52S-01 12 7633775 7633775 C T CD163 Missense_Mutation p.D1109N 0.25 tolerated(0.12) benign(0.055) TCGA-O2-A52S-01 12 81747093 81747093 C A PPFIA2 Missense_Mutation p.W600L 0.40 deleterious(0) benign(0.211) TCGA-O2-A52S-01 12 8608633 8608633 G C CLEC6A 5'UTR 0.19 TCGA-O2-A52S-01 12 8666259 8666259 A G CLEC4D 5'UTR 0.45 TCGA-O2-A52S-01 12 93226582 93226582 C G EEA1 Missense_Mutation p.K320N 0.21 tolerated(0.07) benign(0.01) TCGA-O2-A52S-01 13 113487318 113487318 C T ATP11A Silent p.L514L 0.05 TCGA-O2-A52S-01 13 25905548 25905548 T G NUPL1 Silent p.V429V 0.56 TCGA-O2-A52S-01 13 26163798 26163798 G A ATP8A2 Silent p.Q724Q 0.56 TCGA-O2-A52S-01 13 32705826 32705826 A T FRY Missense_Mutation p.K245M 0.63 deleterious(0) probably_damaging(0.998) TCGA-O2-A52S-01 13 58298881 58298881 T C PCDH17 Missense_Mutation p.V978A 0.59 tolerated(0.09) benign(0.005) TCGA-O2-A52S-01 13 61986300 61986300 G A PCDH20 Silent p.F644F 0.52 TCGA-O2-A52S-01 13 77566266 77566266 C G CLN5 Silent p.A60A 0.62 TCGA-O2-A52S-01 14 101004555 101004555 G T BEGAIN Silent p.P511P 0.32 TCGA-O2-A52S-01 14 106586278 106586278 A G IGHV3-13 Silent p.A69A 0.31 TCGA-O2-A52S-01 14 106963081 106963081 C T IGHV1-45 Missense_Mutation p.M67I 0.29 tolerated(1) benign(0.011) TCGA-O2-A52S-01 14 107179014 107179014 C T IGHV2-70 Missense_Mutation p.V55M 0.21 tolerated(0.11) benign(0.391) TCGA-O2-A52S-01 14 24108204 24108204 C A DHRS2 Missense_Mutation p.S44Y 0.35 deleterious(0) probably_damaging(0.997) TCGA-O2-A52S-01 14 24108205 24108205 C A DHRS2 Silent p.S44S 0.35 TCGA-O2-A52S-01 14 24798374 24798374 G A ADCY4 Missense_Mutation p.R473C 0.26 deleterious(0) probably_damaging(0.997) TCGA-O2-A52S-01 14 24805392 24805392 T A RIPK3 Missense_Mutation p.S516C 0.35 deleterious_low_confidence(0) possibly_damaging(0.669) TCGA-O2-A52S-01 14 26918121 26918121 C T NOVA1 Missense_Mutation p.G190R 0.34 deleterious(0) unknown(0) TCGA-O2-A52S-01 14 36125107 36125108 - A RALGAPA1 Frame_Shift_Ins p.C1295Lfs*2 0.33 TCGA-O2-A52S-01 14 51706956 51706956 G A TMX1 5'UTR 0.42 TCGA-O2-A52S-01 14 59950693 59950693 G A L3HYPDH Silent p.F114F 0.67 TCGA-O2-A52S-01 14 73957919 73957919 C G HEATR4 Intron 0.28 TCGA-O2-A52S-01 14 80271492 80271492 C G NRXN3 Nonsense_Mutation p.S948* 0.08 TCGA-O2-A52S-01 14 80328371 80328371 G T NRXN3 3'UTR 0.43 TCGA-O2-A52S-01 14 92790258 92790258 G C SLC24A4 Silent p.A28A 0.20 TCGA-O2-A52S-01 14 93760841 93760841 T C BTBD7 Silent p.P175P 0.37 TCGA-O2-A52S-01 14 95590553 95590553 G C DICER1 Nonsense_Mutation p.Y452* 0.34 TCGA-O2-A52S-01 15 20193212 20193212 C A IGHV3OR15-7 Missense_Mutation p.C19F 0.26 deleterious_low_confidence(0) possibly_damaging(0.888) TCGA-O2-A52S-01 15 24922364 24922364 G A NPAP1 Missense_Mutation p.M450I 0.56 tolerated(0.3) benign(0.013) TCGA-O2-A52S-01 15 25514836 25514836 G A SNORD115-48 5'Flank 0.50 TCGA-O2-A52S-01 15 26793038 26793038 G C GABRB3 Missense_Mutation p.L442V 0.44 tolerated(0.2) possibly_damaging(0.576) TCGA-O2-A52S-01 15 33927852 33927852 C A RYR3 Silent p.I1071I 0.59 TCGA-O2-A52S-01 15 34654500 34654500 C T LPCAT4 Missense_Mutation p.E303K 0.54 deleterious(0.01) probably_damaging(0.942) TCGA-O2-A52S-01 15 45003781 45003782 CT - B2M Frame_Shift_Del p.L15Ffs*41 0.42 TCGA-O2-A52S-01 15 63449453 63449453 C G RPS27L Intron 0.26 TCGA-O2-A52S-01 15 72144474 72144474 C G MYO9A Missense_Mutation p.M2158I 0.26 tolerated(0.08) benign(0.063) TCGA-O2-A52S-01 15 75969217 75969217 G A CSPG4 Silent p.L1881L 0.36 TCGA-O2-A52S-01 15 76175759 76175759 C T UBE2Q2 Missense_Mutation p.S293L 0.49 deleterious(0.01) probably_damaging(0.974) TCGA-O2-A52S-01 15 80869298 80869298 G T ARNT2 Missense_Mutation p.K535N 0.38 tolerated(0.32) possibly_damaging(0.788) TCGA-O2-A52S-01 15 85403053 85403053 C A ALPK3 Missense_Mutation p.P1540T 0.30 deleterious(0.04) possibly_damaging(0.696) TCGA-O2-A52S-01 15 88483882 88483882 G T NTRK3 Missense_Mutation p.T563N 0.36 deleterious(0.02) benign(0.026) TCGA-O2-A52S-01 16 15817885 15817885 A G NDE1 Intron 0.36 TCGA-O2-A52S-01 16 20380841 20380841 G T PDILT Silent p.G363G 0.58 TCGA-O2-A52S-01 16 25258259 25258259 C G ZKSCAN2 Missense_Mutation p.E420Q 0.35 deleterious(0) probably_damaging(1) TCGA-O2-A52S-01 16 29819577 29819577 G C MAZ Missense_Mutation p.R357T 0.35 deleterious(0) benign(0.192) TCGA-O2-A52S-01 16 3340469 3340469 G A ZNF263 Missense_Mutation p.G655R 0.50 deleterious(0.03) probably_damaging(1) TCGA-O2-A52S-01 16 4731639 4731639 C T MGRN1 Missense_Mutation p.S407L 0.72 deleterious(0.01) possibly_damaging(0.49) TCGA-O2-A52S-01 16 56374744 56374744 A T GNAO1 Splice_Site p.X242_splice 0.31 TCGA-O2-A52S-01 16 58711258 58711258 C A SLC38A7 Nonsense_Mutation p.E228* 0.33 TCGA-O2-A52S-01 16 66949213 66949213 A G CDH16 Missense_Mutation p.F165L 0.31 deleterious(0.01) possibly_damaging(0.877) TCGA-O2-A52S-01 16 70512506 70512506 A G FUK Missense_Mutation p.H961R 0.30 tolerated(0.33) benign(0.001) TCGA-O2-A52S-01 16 72188220 72188220 C G PMFBP1 Missense_Mutation p.E102Q 0.32 tolerated(0.24) benign(0.032) TCGA-O2-A52S-01 16 81053750 81053750 C T CENPN Nonsense_Mutation p.R134* 0.47 TCGA-O2-A52S-01 16 81076765 81076765 G A ATMIN Splice_Site p.X221_splice 0.08 TCGA-O2-A52S-01 16 9934602 9934602 C A GRIN2A Missense_Mutation p.R518L 0.51 deleterious(0) probably_damaging(1) TCGA-O2-A52S-01 17 15878769 15878769 T C ADORA2B 3'UTR 0.15 TCGA-O2-A52S-01 17 16068310 16068310 T A NCOR1 Nonsense_Mutation p.K201* 0.37 TCGA-O2-A52S-01 17 19568332 19568332 G A ALDH3A2 Silent p.T393T 0.54 TCGA-O2-A52S-01 17 2298613 2298613 G A MNT Missense_Mutation p.P70L 0.58 tolerated(0.09) probably_damaging(0.998) TCGA-O2-A52S-01 17 26084329 26084329 C A NOS2 Missense_Mutation p.E1135D 0.42 deleterious(0.03) benign(0.242) TCGA-O2-A52S-01 17 28960364 28960364 G A LRRC37BP1 RNA 0.29 TCGA-O2-A52S-01 17 34416087 34416087 C A CCL3 Silent p.R70R 0.29 TCGA-O2-A52S-01 17 39406598 39406598 A G KRTAP9-4 3'UTR 0.23 TCGA-O2-A52S-01 17 42501755 42501755 C A GPATCH8 Missense_Mutation p.D152Y 0.51 deleterious(0) probably_damaging(1) TCGA-O2-A52S-01 17 43911171 43911171 C T CRHR1 Missense_Mutation p.R370W 0.34 deleterious(0.01) benign(0.009) TCGA-O2-A52S-01 17 45925605 45925605 G T SP6 Nonsense_Mutation p.S64* 0.55 TCGA-O2-A52S-01 17 47115694 47115694 C G IGF2BP1 Missense_Mutation p.A189G 0.30 tolerated(0.59) benign(0.001) TCGA-O2-A52S-01 17 54893222 54893222 C A C17orf67 5'UTR 0.27 TCGA-O2-A52S-01 17 56588848 56588848 C A MTMR4 Missense_Mutation p.V79L 0.42 deleterious(0.01) possibly_damaging(0.607) TCGA-O2-A52S-01 17 60642470 60642470 G C TLK2 Missense_Mutation p.D314H 0.36 deleterious(0) probably_damaging(0.998) TCGA-O2-A52S-01 17 61958815 61958815 A C GH2 Missense_Mutation p.S25R 0.29 deleterious(0.02) possibly_damaging(0.811) TCGA-O2-A52S-01 17 62025412 62025412 G C SCN4A Missense_Mutation p.D1052E 0.18 deleterious(0) probably_damaging(0.929) TCGA-O2-A52S-01 17 65074319 65074319 G T HELZ 3'UTR 0.15 TCGA-O2-A52S-01 17 7760367 7760367 G A LSMD1 Silent p.I125I 0.07 TCGA-O2-A52S-01 17 79632366 79632366 G C OXLD1 Nonsense_Mutation p.Y103* 0.21 TCGA-O2-A52S-01 18 21390336 21390336 G T LAMA3 Missense_Mutation p.W537L 0.31 benign(0.103) TCGA-O2-A52S-01 18 23637658 23637658 C A SS18 Missense_Mutation p.G94C 0.43 deleterious(0) probably_damaging(0.976) TCGA-O2-A52S-01 18 66344169 66344169 C G TMX3 3'UTR 0.58 TCGA-O2-A52S-01 19 1007917 1007917 C T GRIN3B Missense_Mutation p.S754F 0.24 deleterious(0.01) probably_damaging(0.927) TCGA-O2-A52S-01 19 11018821 11018821 G A CARM1 Silent p.Q151Q 0.29 TCGA-O2-A52S-01 19 12501933 12501933 C A ZNF799 Missense_Mutation p.G427C 0.36 deleterious(0.01) probably_damaging(1) TCGA-O2-A52S-01 19 16275629 16275629 C T CIB3 Missense_Mutation p.V148I 0.35 tolerated(0.3) benign(0.153) TCGA-O2-A52S-01 19 18368559 18368559 G T KIAA1683 Missense_Mutation p.Q1179K 0.33 tolerated(0.2) benign(0.113) TCGA-O2-A52S-01 19 19221466 19221466 G A SLC25A42 Silent p.P246P 0.50 TCGA-O2-A52S-01 19 19654993 19654993 G T CILP2 Missense_Mutation p.V547L 0.33 deleterious(0.01) possibly_damaging(0.873) TCGA-O2-A52S-01 19 19823254 19823254 T A ZNF14 Missense_Mutation p.Y279F 0.32 deleterious(0.04) probably_damaging(0.997) TCGA-O2-A52S-01 19 22271277 22271277 C G ZNF257 Nonsense_Mutation p.S242* 0.26 TCGA-O2-A52S-01 19 23405664 23405664 C A ZNF724P Silent p.R461R 0.38 TCGA-O2-A52S-01 19 30936637 30936637 C T ZNF536 Missense_Mutation p.S723L 0.64 deleterious(0.01) probably_damaging(0.978) TCGA-O2-A52S-01 19 37880900 37880900 C A ZNF527 3'UTR 0.42 TCGA-O2-A52S-01 19 39068591 39068591 G A RYR1 Missense_Mutation p.E4736K 0.50 unknown(0) TCGA-O2-A52S-01 19 41450313 41450313 T C AC092071.1 5'Flank 0.46 TCGA-O2-A52S-01 19 42471890 42471890 A G ATP1A3 Missense_Mutation p.F962L 0.24 tolerated(0.54) benign(0.001) TCGA-O2-A52S-01 19 42510946 42510946 T A GRIK5 Missense_Mutation p.I630F 0.21 deleterious(0) probably_damaging(0.999) TCGA-O2-A52S-01 19 45494522 45494522 C T CLPTM1 Silent p.I482I 0.32 TCGA-O2-A52S-01 19 46032125 46032125 G A OPA3 3'UTR 0.34 TCGA-O2-A52S-01 19 504822 504822 T A MADCAM1 Missense_Mutation p.L336M 0.44 tolerated(0.12) possibly_damaging(0.665) TCGA-O2-A52S-01 19 51133406 51133406 G A SYT3 Missense_Mutation p.L233F 0.32 tolerated(0.06) benign(0.302) TCGA-O2-A52S-01 19 52877654 52877654 G T ZNF880 Missense_Mutation p.R81M 0.31 tolerated(0.26) possibly_damaging(0.864) TCGA-O2-A52S-01 19 52877655 52877655 G T ZNF880 Missense_Mutation p.R81S 0.31 tolerated(0.4) benign(0.304) TCGA-O2-A52S-01 19 54515503 54515503 C G CACNG6 3'UTR 0.34 TCGA-O2-A52S-01 19 54600416 54600416 C A OSCAR Nonsense_Mutation p.G40* 0.27 TCGA-O2-A52S-01 19 55112350 55112350 G C LILRA1 3'UTR 0.44 TCGA-O2-A52S-01 19 55224699 55224699 A T LILRP2 RNA 0.27 TCGA-O2-A52S-01 19 55559896 55559896 C G RDH13 Missense_Mutation p.L153F 0.35 deleterious(0.02) probably_damaging(1) TCGA-O2-A52S-01 19 57326644 57326644 C A PEG3 Nonsense_Mutation p.E1056* 0.25 TCGA-O2-A52S-01 19 58453211 58453211 G C ZNF256 Missense_Mutation p.P322R 0.35 tolerated(0.06) probably_damaging(0.99) TCGA-O2-A52S-01 19 58858765 58858765 G A A1BG Silent p.H478H 0.31 TCGA-O2-A52S-01 19 59061834 59061834 G T TRIM28 Missense_Mutation p.V808L 0.25 tolerated(0.9) benign(0) TCGA-O2-A52S-01 19 7831014 7831014 G T CLEC4M Missense_Mutation p.K235N 0.37 tolerated(0.08) probably_damaging(0.931) TCGA-O2-A52S-01 1 110883870 110883870 G A RBM15 Missense_Mutation p.D615N 0.71 tolerated(0.23) benign(0.01) TCGA-O2-A52S-01 1 112020371 112020371 G C C1orf162 Missense_Mutation p.D101H 0.59 deleterious(0) probably_damaging(0.997) TCGA-O2-A52S-01 1 115455700 115455700 G T SYCP1 Nonsense_Mutation p.E526* 0.44 TCGA-O2-A52S-01 1 145109523 145109523 G C SEC22B Splice_Site 0.11 TCGA-O2-A52S-01 1 147380864 147380864 A G GJA8 Missense_Mutation p.Q261R 0.41 deleterious(0.02) possibly_damaging(0.883) TCGA-O2-A52S-01 1 152277083 152277083 A G FLG Missense_Mutation p.S3427P 0.25 unknown(0) TCGA-O2-A52S-01 1 152383089 152383089 G C CRNN Missense_Mutation p.Q157E 0.25 deleterious(0.01) possibly_damaging(0.64) TCGA-O2-A52S-01 1 154936155 154936155 C T SHC1 3'UTR 0.29 TCGA-O2-A52S-01 1 157545255 157545255 G C FCRL4 3'UTR 0.41 TCGA-O2-A52S-01 1 158225023 158225023 T G CD1A Missense_Mutation p.W70G 0.25 deleterious(0) probably_damaging(0.999) TCGA-O2-A52S-01 1 158298737 158298737 G T CD1B Nonsense_Mutation p.C318* 0.49 TCGA-O2-A52S-01 1 158736389 158736389 G T OR6N1 Missense_Mutation p.F28L 0.28 deleterious(0) probably_damaging(0.998) TCGA-O2-A52S-01 1 158906738 158906738 G C PYHIN1 Missense_Mutation p.G13A 0.51 deleterious(0.01) probably_damaging(0.998) TCGA-O2-A52S-01 1 160147339 160147339 C - ATP1A4 Frame_Shift_Del p.Y875Tfs*3 0.21 TCGA-O2-A52S-01 1 160580493 160580493 G C SLAMF1 3'UTR 0.17 TCGA-O2-A52S-01 1 165532783 165532783 G C LRRC52 Missense_Mutation p.G222R 0.20 deleterious(0) probably_damaging(0.996) TCGA-O2-A52S-01 1 171506600 171506600 C G PRRC2C Missense_Mutation p.P829R 0.70 unknown(0) TCGA-O2-A52S-01 1 173570861 173570861 C A SLC9C2 Missense_Mutation p.G19W 0.55 deleterious_low_confidence(0) probably_damaging(1) TCGA-O2-A52S-01 1 173722445 173722445 A T KLHL20 Nonsense_Mutation p.R284* 0.52 TCGA-O2-A52S-01 1 173931028 173931028 C A RC3H1 Silent p.P679P 0.53 TCGA-O2-A52S-01 1 181687262 181687262 C T CACNA1E Missense_Mutation p.R533C 0.49 deleterious(0) possibly_damaging(0.898) TCGA-O2-A52S-01 1 196927180 196927180 G A CFHR2 Nonsense_Mutation p.W197* 0.24 TCGA-O2-A52S-01 1 201437912 201437912 C G PHLDA3 Translation_Start_Site p.M1? 0.65 deleterious_low_confidence(0) benign(0.004) TCGA-O2-A52S-01 1 215987171 215987171 G T USH2A Missense_Mutation p.L3216M 0.79 benign(0.326) TCGA-O2-A52S-01 1 221054656 221054656 G T HLX Missense_Mutation p.S238I 0.78 deleterious(0.02) possibly_damaging(0.584) TCGA-O2-A52S-01 1 235866205 235866205 T C LYST Missense_Mutation p.T3406A 0.73 deleterious(0.02) probably_damaging(0.991) TCGA-O2-A52S-01 1 247171308 247171308 C G ZNF695 5'UTR 0.64 TCGA-O2-A52S-01 1 248059865 248059865 G T OR2W3 3'UTR 0.68 TCGA-O2-A52S-01 1 248129572 248129572 G C OR2AK2 Silent p.T313T 0.64 TCGA-O2-A52S-01 1 248651998 248651998 G T OR2T5 Missense_Mutation p.V37L 0.21 tolerated(0.43) benign(0.008) TCGA-O2-A52S-01 1 38184466 38184466 G T EPHA10 Missense_Mutation p.R927S 0.65 tolerated(0.15) possibly_damaging(0.864) TCGA-O2-A52S-01 1 54293824 54293824 G A NDC1 Silent p.S101S 0.58 TCGA-O2-A52S-01 1 84373332 84373332 C G TTLL7 Missense_Mutation p.R600P 0.31 deleterious_low_confidence(0.04) possibly_damaging(0.55) TCGA-O2-A52S-01 1 86142944 86142944 C G ZNHIT6 Missense_Mutation p.E408Q 0.54 deleterious(0) possibly_damaging(0.887) TCGA-O2-A52S-01 20 25002075 25002075 T C ACSS1 Missense_Mutation p.N353S 0.53 deleterious(0) probably_damaging(0.973) TCGA-O2-A52S-01 20 30433417 30433417 C T FOXS1 5'UTR 0.44 TCGA-O2-A52S-01 20 30733190 30733190 A T TM9SF4 Missense_Mutation p.I283F 0.20 deleterious(0) probably_damaging(0.999) TCGA-O2-A52S-01 20 31291245 31291245 T A COMMD7 Missense_Mutation p.Q181L 0.20 deleterious(0) probably_damaging(0.964) TCGA-O2-A52S-01 20 33001553 33001553 G C ITCH Missense_Mutation p.E115Q 0.18 tolerated(0.36) benign(0.001) TCGA-O2-A52S-01 20 33001643 33001643 G C ITCH Missense_Mutation p.E145Q 0.21 deleterious(0.04) benign(0.012) TCGA-O2-A52S-01 20 33364108 33364108 C T NCOA6 Missense_Mutation p.V127I 0.62 benign(0.023) TCGA-O2-A52S-01 20 37194016 37194016 G A RALGAPB Missense_Mutation p.E1238K 0.55 tolerated(0.49) benign(0.318) TCGA-O2-A52S-01 20 44576013 44576013 C T PCIF1 Missense_Mutation p.H607Y 0.49 deleterious(0.02) possibly_damaging(0.898) TCGA-O2-A52S-01 20 44678342 44678342 G A SLC12A5 Silent p.L721L 0.21 TCGA-O2-A52S-01 20 48747538 48747561 CACTCATTCATTTACTCACTTGCC - TMEM189 Intron 0.19 TCGA-O2-A52S-01 20 49575658 49575658 C T MOCS3 Silent p.L93L 0.24 TCGA-O2-A52S-01 20 58342273 58342273 G T PHACTR3 Missense_Mutation p.A192S 0.12 tolerated(0.66) benign(0.046) TCGA-O2-A52S-01 20 60448957 60448957 G T CDH4 Splice_Site p.X350_splice 0.16 TCGA-O2-A52S-01 20 61981731 61981731 T C CHRNA4 Silent p.V344V 0.57 TCGA-O2-A52S-01 20 62730142 62730142 G A OPRL1 Missense_Mutation p.R368Q 0.39 tolerated(0.13) benign(0.207) TCGA-O2-A52S-01 21 10862957 10862957 G T IGHV1OR21-1 Missense_Mutation p.A85S 0.23 tolerated(0.05) benign(0.002) TCGA-O2-A52S-01 21 11098839 11098839 C T BAGE2 RNA 0.53 TCGA-O2-A52S-01 22 23915319 23915319 T C IGLL1 3'UTR 0.25 TCGA-O2-A52S-01 22 31583090 31583090 A T RNF185 Nonsense_Mutation p.K4* 0.27 TCGA-O2-A52S-01 22 37491966 37491966 G A TMPRSS6 Missense_Mutation p.P199L 0.24 tolerated(0.25) possibly_damaging(0.721) TCGA-O2-A52S-01 22 37875447 37875447 T A MFNG Missense_Mutation p.Y166F 0.45 deleterious(0) probably_damaging(0.911) TCGA-O2-A52S-01 22 39908389 39908389 C T MIEF1 Nonsense_Mutation p.Q159* 0.33 TCGA-O2-A52S-01 22 50664253 50664253 G C TUBGCP6 Silent p.A651A 0.41 TCGA-O2-A52S-01 22 50728803 50728803 G T PLXNB2 Missense_Mutation p.P71T 0.33 deleterious(0) probably_damaging(1) TCGA-O2-A52S-01 2 100368743 100368743 T A AFF3 Silent p.P339P 0.30 TCGA-O2-A52S-01 2 105472935 105472935 G T POU3F3 Nonsense_Mutation p.E323* 0.40 TCGA-O2-A52S-01 2 112945007 112945007 C T FBLN7 Missense_Mutation p.S415L 0.37 deleterious(0) possibly_damaging(0.626) TCGA-O2-A52S-01 2 113416900 113416900 G C SLC20A1 Missense_Mutation p.E390Q 0.35 tolerated(0.06) possibly_damaging(0.648) TCGA-O2-A52S-01 2 118854288 118854288 G T INSIG2 Missense_Mutation p.Q52H 0.31 deleterious(0) probably_damaging(0.998) TCGA-O2-A52S-01 2 119750011 119750011 C A MARCO Missense_Mutation p.S404Y 0.20 deleterious(0.05) unknown(0) TCGA-O2-A52S-01 2 120195087 120195087 C T TMEM37 3'UTR 0.30 TCGA-O2-A52S-01 2 120439236 120439236 G A TMEM177 Silent p.E269E 0.33 TCGA-O2-A52S-01 2 136690373 136690373 T G DARS Missense_Mutation p.N182H 0.33 tolerated(0.05) probably_damaging(0.998) TCGA-O2-A52S-01 2 14774448 14774448 G A FAM84A Silent p.A115A 0.54 TCGA-O2-A52S-01 2 152552171 152552171 C A NEB Missense_Mutation p.S532I 0.33 possibly_damaging(0.578) TCGA-O2-A52S-01 2 158272593 158272593 G A CYTIP Missense_Mutation p.P226S 0.29 tolerated(1) benign(0.001) TCGA-O2-A52S-01 2 160092553 160092553 G T WDSUB1 Missense_Mutation p.H474Q 0.26 tolerated(1) benign(0.01) TCGA-O2-A52S-01 2 163213395 163213395 G T GCA Missense_Mutation p.R145L 0.28 tolerated(0.2) benign(0.03) TCGA-O2-A52S-01 2 1652687 1652687 C T PXDN Silent p.P955P 0.25 TCGA-O2-A52S-01 2 168074761 168074761 G T XIRP2 Missense_Mutation p.R270L 0.33 benign(0.017) TCGA-O2-A52S-01 2 173853462 173853462 G A RAPGEF4 Silent p.K423K 0.37 TCGA-O2-A52S-01 2 177016401 177016401 G T HOXD4 Missense_Mutation p.D14Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-O2-A52S-01 2 179418646 179418646 G A TTN Missense_Mutation p.P29731L 0.38 TCGA-O2-A52S-01 2 179424818 179424818 C - TTN Frame_Shift_Del p.A28681Pfs*3 0.27 TCGA-O2-A52S-01 2 179438186 179438186 G T TTN Missense_Mutation p.P24225T 0.37 TCGA-O2-A52S-01 2 179444882 179444882 G C TTN Missense_Mutation p.P22378A 0.32 TCGA-O2-A52S-01 2 179458576 179458576 A T TTN Missense_Mutation p.V19484E 0.34 TCGA-O2-A52S-01 2 179472745 179472745 C G TTN Missense_Mutation p.W17590S 0.24 TCGA-O2-A52S-01 2 179568990 179568990 G C TTN Missense_Mutation p.T10036R 0.36 TCGA-O2-A52S-01 2 179580312 179580312 T A TTN Missense_Mutation p.H8610L 0.49 TCGA-O2-A52S-01 2 179606453 179606453 A G TTN Missense_Mutation p.V3836A 0.24 TCGA-O2-A52S-01 2 179615131 179615131 G A TTN Intron 0.36 TCGA-O2-A52S-01 2 179643413 179643413 G A TTN Intron 0.75 TCGA-O2-A52S-01 2 179665379 179665379 C T TTN Missense_Mutation p.R109Q 0.28 TCGA-O2-A52S-01 2 179742653 179742653 C T CCDC141 Intron 0.40 TCGA-O2-A52S-01 2 183853826 183853826 G A NCKAP1 Silent p.L299L 0.37 TCGA-O2-A52S-01 2 197171863 197171863 C G HECW2 Missense_Mutation p.A894P 0.40 tolerated(0.3) benign(0.001) TCGA-O2-A52S-01 2 201790592 201790592 G A ORC2 Nonsense_Mutation p.Q372* 0.34 TCGA-O2-A52S-01 2 202677226 202677226 C A CDK15 Missense_Mutation p.A130D 0.32 deleterious(0) probably_damaging(0.997) TCGA-O2-A52S-01 2 203826029 203826029 A T CARF Nonsense_Mutation p.K238* 0.38 TCGA-O2-A52S-01 2 212426757 212426757 C A ERBB4 Silent p.V786V 0.27 TCGA-O2-A52S-01 2 215275078 215275078 G C SPAG16 3'UTR 0.34 TCGA-O2-A52S-01 2 218683443 218683443 G A TNS1 Silent p.D1100D 0.33 TCGA-O2-A52S-01 2 225339043 225339043 C G CUL3 Missense_Mutation p.K742N 0.25 deleterious(0) probably_damaging(1) TCGA-O2-A52S-01 2 225367790 225367790 C T CUL3 Splice_Site p.X460_splice 0.36 TCGA-O2-A52S-01 2 227659706 227659706 T A IRS1 Intron 0.31 TCGA-O2-A52S-01 2 227729578 227729578 G T RHBDD1 Nonsense_Mutation p.E57* 0.38 TCGA-O2-A52S-01 2 227729790 227729790 C T RHBDD1 Silent p.A127A 0.32 TCGA-O2-A52S-01 2 233431658 233431658 G C EIF4E2 Missense_Mutation p.E165D 0.27 deleterious(0.05) benign(0.343) TCGA-O2-A52S-01 2 238280783 238280783 C T COL6A3 Missense_Mutation p.D1293N 0.28 probably_damaging(0.969) TCGA-O2-A52S-01 2 24427131 24427131 T A ITSN2 Missense_Mutation p.D1640V 0.51 deleterious(0) unknown(0) TCGA-O2-A52S-01 2 26357913 26357913 G C RAB10 3'UTR 0.26 TCGA-O2-A52S-01 2 29129345 29129345 G A WDR43 Missense_Mutation p.R128K 0.55 tolerated(1) benign(0.002) TCGA-O2-A52S-01 2 61463016 61463016 C G USP34 Missense_Mutation p.L2332F 0.52 deleterious(0) probably_damaging(0.979) TCGA-O2-A52S-01 2 62450581 62450581 G A B3GNT2 3'UTR 0.47 TCGA-O2-A52S-01 2 63816135 63816135 G A MDH1 5'Flank 0.25 TCGA-O2-A52S-01 2 71060088 71060088 C A CD207 Missense_Mutation p.E220D 0.36 deleterious(0.01) benign(0.23) TCGA-O2-A52S-01 2 73676718 73676718 G T ALMS1 Missense_Mutation p.A1021S 0.30 benign(0.001) TCGA-O2-A52S-01 2 74902451 74902451 G T SEMA4F Missense_Mutation p.V438L 0.38 deleterious(0.04) possibly_damaging(0.565) TCGA-O2-A52S-01 2 80530001 80530001 A T LRRTM1 Missense_Mutation p.L315Q 0.28 tolerated(0.6) benign(0.074) TCGA-O2-A52S-01 2 85097508 85097508 G C TRABD2A Silent p.L170L 0.27 TCGA-O2-A52S-01 2 88991273 88991273 C T RPIA Silent p.P19P 0.30 TCGA-O2-A52S-01 2 89953143 89953143 G A IGKV1D-33 Missense_Mutation p.A47T 0.25 deleterious(0.03) benign(0.361) TCGA-O2-A52S-01 2 95818464 95818464 C A ZNF514 Nonsense_Mutation p.E58* 0.35 TCGA-O2-A52S-01 2 95945732 95945732 C T PROM2 Missense_Mutation p.R472C 0.29 tolerated(0.05) benign(0.08) TCGA-O2-A52S-01 2 97526370 97526370 G A SEMA4C Missense_Mutation p.S832L 0.29 deleterious(0) probably_damaging(0.997) TCGA-O2-A52S-01 3 111795847 111795847 G T TMPRSS7 Missense_Mutation p.D568Y 0.33 deleterious(0) probably_damaging(0.997) TCGA-O2-A52S-01 3 119101987 119101987 G T ARHGAP31 Missense_Mutation p.R199L 0.22 deleterious(0) probably_damaging(0.985) TCGA-O2-A52S-01 3 119134747 119134747 C G ARHGAP31 Nonsense_Mutation p.S1324* 0.28 TCGA-O2-A52S-01 3 119305215 119305215 G T ADPRH Missense_Mutation p.G128C 0.39 deleterious(0) probably_damaging(1) TCGA-O2-A52S-01 3 119812297 119812297 G C GSK3B 5'UTR 0.26 TCGA-O2-A52S-01 3 120134796 120134796 C G FSTL1 Missense_Mutation p.G48R 0.26 deleterious(0) probably_damaging(0.981) TCGA-O2-A52S-01 3 126211305 126211305 T C UROC1 Missense_Mutation p.I582V 0.47 deleterious(0.03) benign(0.024) TCGA-O2-A52S-01 3 130188291 130188291 C G COL6A5 Missense_Mutation p.I2481M 0.32 tolerated(0.12) benign(0.418) TCGA-O2-A52S-01 3 138724770 138724770 G T PRR23A Missense_Mutation p.A114E 0.60 tolerated(0.87) benign(0.286) TCGA-O2-A52S-01 3 142751783 142751783 A G U2SURP Missense_Mutation p.K590E 0.48 deleterious(0) probably_damaging(0.916) TCGA-O2-A52S-01 3 146171848 146171848 C G PLSCR2 Missense_Mutation p.V215L 0.16 tolerated(0.07) possibly_damaging(0.779) TCGA-O2-A52S-01 3 155551756 155551756 G A SLC33A1 Silent p.A346A 0.20 TCGA-O2-A52S-01 3 158991669 158991669 C A IQCJ-SCHIP1 Intron 0.35 TCGA-O2-A52S-01 3 169820319 169820319 C G PHC3 Missense_Mutation p.E927D 0.43 tolerated(0.56) benign(0.006) TCGA-O2-A52S-01 3 172476818 172476818 C T ECT2 Silent p.L179L 0.39 TCGA-O2-A52S-01 3 172607342 172607342 G T SPATA16 3'UTR 0.42 TCGA-O2-A52S-01 3 180334415 180334415 G A CCDC39 Silent p.D825D 0.13 TCGA-O2-A52S-01 3 183898925 183898925 G A AP2M1 Silent p.L206L 0.41 TCGA-O2-A52S-01 3 183898938 183898938 G C AP2M1 Missense_Mutation p.E211Q 0.41 deleterious(0.03) possibly_damaging(0.887) TCGA-O2-A52S-01 3 184045718 184045718 G A EIF4G1 Missense_Mutation p.R1301H 0.37 deleterious(0) probably_damaging(0.999) TCGA-O2-A52S-01 3 188202421 188202421 A T LPP Missense_Mutation p.S79C 0.24 deleterious(0.03) benign(0.001) TCGA-O2-A52S-01 3 3081727 3081727 C A CNTN4 Missense_Mutation p.P724T 0.58 deleterious(0.02) benign(0.334) TCGA-O2-A52S-01 3 38627351 38627351 G A SCN5A Missense_Mutation p.S873L 0.67 deleterious(0.03) benign(0.06) TCGA-O2-A52S-01 3 42733411 42733411 C G KLHL40 Missense_Mutation p.R598G 0.48 deleterious(0.02) benign(0.178) TCGA-O2-A52S-01 3 46062804 46062804 C G XCR1 Silent p.L212L 0.39 TCGA-O2-A52S-01 3 49836705 49836705 C A CDHR4 Missense_Mutation p.R72M 0.64 tolerated(0.07) possibly_damaging(0.706) TCGA-O2-A52S-01 3 51266139 51266139 G A DOCK3 Silent p.L565L 0.52 TCGA-O2-A52S-01 3 70008457 70008457 A T MITF Missense_Mutation p.K349N 0.45 deleterious(0) probably_damaging(1) TCGA-O2-A52S-01 3 74347283 74347283 A T CNTN3 Silent p.P742P 0.59 TCGA-O2-A52S-01 3 74349047 74349047 C T CNTN3 Missense_Mutation p.S713N 0.62 deleterious(0.01) probably_damaging(0.998) TCGA-O2-A52S-01 3 78734922 78734922 G C ROBO1 Missense_Mutation p.T439R 0.39 deleterious(0) probably_damaging(0.999) TCGA-O2-A52S-01 3 93624682 93624682 G - PROS1 Frame_Shift_Del p.H183Tfs*25 0.37 TCGA-O2-A52S-01 3 9425979 9425979 G A THUMPD3 Missense_Mutation p.R440Q 0.56 tolerated(0.06) possibly_damaging(0.499) TCGA-O2-A52S-01 3 97731316 97731316 T C GABRR3 Intron 0.30 TCGA-O2-A52S-01 4 115997744 115997744 A G NDST4 Missense_Mutation p.L150S 0.52 deleterious(0) probably_damaging(0.995) TCGA-O2-A52S-01 4 120528423 120528423 C T PDE5A Missense_Mutation p.R61K 0.48 tolerated(0.11) possibly_damaging(0.704) TCGA-O2-A52S-01 4 122740616 122740616 C G CCNA2 Missense_Mutation p.D305H 0.54 deleterious(0) possibly_damaging(0.763) TCGA-O2-A52S-01 4 122828486 122828486 C A TRPC3 Missense_Mutation p.G677W 0.58 deleterious(0) probably_damaging(0.999) TCGA-O2-A52S-01 4 126241041 126241041 C G FAT4 Missense_Mutation p.H1159D 0.52 benign(0.351) TCGA-O2-A52S-01 4 141832447 141832447 G T RNF150 Missense_Mutation p.P350H 0.52 tolerated(0.13) benign(0.034) TCGA-O2-A52S-01 4 144134741 144134741 G A USP38 Missense_Mutation p.E538K 0.64 deleterious(0) probably_damaging(0.911) TCGA-O2-A52S-01 4 166976242 166976242 C A TLL1 Missense_Mutation p.D513E 0.56 deleterious(0.04) benign(0.442) TCGA-O2-A52S-01 4 17493961 17493961 T C QDPR Missense_Mutation p.M147V 0.53 deleterious(0) benign(0.026) TCGA-O2-A52S-01 4 89628071 89628071 C T HERC3 Missense_Mutation p.T1038I 0.43 tolerated(0.66) benign(0.346) TCGA-O2-A52S-01 4 94376855 94376855 C A GRID2 Missense_Mutation p.R530S 0.55 deleterious(0) probably_damaging(1) TCGA-O2-A52S-01 5 102891707 102891707 C A NUDT12 Missense_Mutation p.G297C 0.52 deleterious(0) probably_damaging(1) TCGA-O2-A52S-01 5 127516588 127516588 G C SLC12A2 Missense_Mutation p.L1038F 0.60 deleterious(0) probably_damaging(0.989) TCGA-O2-A52S-01 5 140215666 140215666 G T PCDHA7 Silent p.L566L 0.60 TCGA-O2-A52S-01 5 140718731 140718731 C T PCDHGA2 Missense_Mutation p.R65C 0.52 deleterious_low_confidence(0) possibly_damaging(0.877) TCGA-O2-A52S-01 5 140812205 140812205 C G PCDHGA12 Missense_Mutation p.R627G 0.50 deleterious_low_confidence(0) probably_damaging(0.922) TCGA-O2-A52S-01 5 156514302 156514302 G A HAVCR2 Silent p.L239L 0.57 TCGA-O2-A52S-01 5 170725886 170725886 G A RANBP17 3'UTR 0.50 TCGA-O2-A52S-01 5 179135254 179135254 G A CANX Missense_Mutation p.E107K 0.45 deleterious(0) benign(0.111) TCGA-O2-A52S-01 5 179290637 179290637 G A TBC1D9B Silent p.I1188I 0.53 TCGA-O2-A52S-01 5 33997607 33997607 G C AMACR Intron 0.62 TCGA-O2-A52S-01 5 76326620 76326620 G T AGGF1 Missense_Mutation p.R10L 0.32 tolerated_low_confidence(0.21) unknown(0) TCGA-O2-A52S-01 5 7832061 7832061 C T C5orf49 Missense_Mutation p.D116N 0.47 tolerated(0.11) possibly_damaging(0.72) TCGA-O2-A52S-01 5 78808692 78808692 T G HOMER1 5'UTR 0.50 TCGA-O2-A52S-01 5 85592208 85592208 C A NBPF22P RNA 0.25 TCGA-O2-A52S-01 6 107827583 107827583 C - SOBP Frame_Shift_Del p.I126Lfs*5 0.35 TCGA-O2-A52S-01 6 132168961 132168961 G T ENPP1 Missense_Mutation p.G96W 0.50 deleterious(0) probably_damaging(1) TCGA-O2-A52S-01 6 146720426 146720426 C A GRM1 Missense_Mutation p.L751M 0.34 tolerated(0.13) benign(0.285) TCGA-O2-A52S-01 6 147124634 147124634 G T ADGB Intron 0.23 TCGA-O2-A52S-01 6 152674536 152674536 C G SYNE1 Missense_Mutation p.Q3705H 0.30 possibly_damaging(0.646) TCGA-O2-A52S-01 6 25776899 25776899 T C SLC17A4 Missense_Mutation p.L355P 0.49 deleterious(0) probably_damaging(1) TCGA-O2-A52S-01 6 26021056 26021056 C G HIST1H3A Missense_Mutation p.I113M 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.607) TCGA-O2-A52S-01 6 33179633 33179639 GACACCG - RING1 Frame_Shift_Del p.D325Efs*49 0.42 TCGA-O2-A52S-01 6 35280238 35280238 C T DEF6 Missense_Mutation p.R195W 0.08 deleterious(0) probably_damaging(0.965) TCGA-O2-A52S-01 6 36922349 36922349 A T PI16 5'UTR 0.83 TCGA-O2-A52S-01 6 49582545 49582545 A T RHAG Missense_Mutation p.F221Y 0.42 tolerated(0.37) probably_damaging(0.99) TCGA-O2-A52S-01 6 55214904 55214904 G T GFRAL Missense_Mutation p.D111Y 0.50 deleterious(0.04) benign(0.02) TCGA-O2-A52S-01 6 64401767 64401767 C A PHF3 Missense_Mutation p.T777N 0.38 tolerated(0.15) benign(0.197) TCGA-O2-A52S-01 6 70034833 70034833 G A BAI3 Missense_Mutation p.E962K 0.26 deleterious(0) probably_damaging(0.995) TCGA-O2-A52S-01 6 76018232 76018232 C T FILIP1 3'UTR 0.58 TCGA-O2-A52S-01 6 76018458 76018458 C T FILIP1 Silent p.L1197L 0.42 TCGA-O2-A52S-01 6 76744335 76744335 C T IMPG1 Intron 0.39 TCGA-O2-A52S-01 6 89638768 89638768 C T RNGTT Silent p.E101E 0.21 TCGA-O2-A52S-01 7 100349820 100349820 A C ZAN Missense_Mutation p.I698L 0.28 benign(0.068) TCGA-O2-A52S-01 7 11521456 11521456 T G THSD7A Missense_Mutation p.Q659P 0.14 deleterious(0.02) probably_damaging(0.968) TCGA-O2-A52S-01 7 128624309 128624309 T G TNPO3 Silent p.T565T 0.35 TCGA-O2-A52S-01 7 130561529 130561529 G C MIR29A 3'Flank 0.36 TCGA-O2-A52S-01 7 135079001 135079001 C A CNOT4 Silent p.S432S 0.32 TCGA-O2-A52S-01 7 137082142 137082142 C T DGKI Missense_Mutation p.D988N 0.20 tolerated(0.34) probably_damaging(0.995) TCGA-O2-A52S-01 7 141776020 141776020 G C MGAM Intron 0.31 TCGA-O2-A52S-01 7 141952085 141952085 A C PRSS58 Missense_Mutation p.F228V 0.38 tolerated(0.08) possibly_damaging(0.54) TCGA-O2-A52S-01 7 143701295 143701295 T A OR6B1 Nonsense_Mutation p.L69* 0.32 TCGA-O2-A52S-01 7 143792925 143792925 C G OR2A12 Missense_Mutation p.S242C 0.32 deleterious(0) probably_damaging(0.995) TCGA-O2-A52S-01 7 150765122 150765122 C G SLC4A2 Silent p.L376L 0.25 TCGA-O2-A52S-01 7 150815676 150815677 CG T AGAP3 Frame_Shift_Del p.S309Lfs*103 0.34 TCGA-O2-A52S-01 7 15584515 15584515 A G AGMO Silent p.Y97Y 0.41 TCGA-O2-A52S-01 7 2472758 2472758 C T CHST12 Missense_Mutation p.R162W 0.27 deleterious(0) probably_damaging(0.995) TCGA-O2-A52S-01 7 31918634 31918634 C G PDE1C Missense_Mutation p.V194L 0.32 tolerated(0.06) probably_damaging(0.974) TCGA-O2-A52S-01 7 35289800 35289800 T A TBX20 Missense_Mutation p.K48M 0.25 tolerated(0.05) benign(0.075) TCGA-O2-A52S-01 7 38725187 38725187 C T FAM183B 3'UTR 0.41 TCGA-O2-A52S-01 7 39247172 39247172 C A POU6F2 Missense_Mutation p.A155E 0.33 deleterious(0) probably_damaging(0.986) TCGA-O2-A52S-01 7 44572996 44572996 G A NPC1L1 Intron 0.29 TCGA-O2-A52S-01 7 53103687 53103687 T A POM121L12 Missense_Mutation p.L108Q 0.39 deleterious(0.04) probably_damaging(0.955) TCGA-O2-A52S-01 7 6190123 6190123 G A USP42 Silent p.S729S 0.38 TCGA-O2-A52S-01 7 82784363 82784363 G A PCLO Nonsense_Mutation p.Q532* 0.35 TCGA-O2-A52S-01 7 86415634 86415634 G A GRM3 Missense_Mutation p.A176T 0.34 tolerated(0.16) probably_damaging(0.936) TCGA-O2-A52S-01 7 86493770 86493770 G C GRM3 3'UTR 0.31 TCGA-O2-A52S-01 7 87190681 87190681 T A ABCB1 Missense_Mutation p.K242I 0.34 deleterious(0.02) possibly_damaging(0.559) TCGA-O2-A52S-01 7 897592 897592 A C SUN1 Silent p.R508R 0.36 TCGA-O2-A52S-01 7 94034196 94034196 G T COL1A2 Missense_Mutation p.G142C 0.29 unknown(0) TCGA-O2-A52S-01 7 99950388 99950388 G T PILRB 5'UTR 0.73 TCGA-O2-A52S-01 8 105235967 105235967 G C RIMS2 Intron 0.21 TCGA-O2-A52S-01 8 105257211 105257211 G C RIMS2 Missense_Mutation p.M1134I 0.35 deleterious_low_confidence(0.04) benign(0.409) TCGA-O2-A52S-01 8 110984943 110984943 C G KCNV1 Missense_Mutation p.E179Q 0.35 tolerated(0.17) possibly_damaging(0.53) TCGA-O2-A52S-01 8 113421159 113421159 C A CSMD3 Missense_Mutation p.G1833V 0.34 deleterious(0) probably_damaging(1) TCGA-O2-A52S-01 8 113421219 113421219 T A CSMD3 Missense_Mutation p.D1813V 0.28 deleterious(0) probably_damaging(1) TCGA-O2-A52S-01 8 113529395 113529395 C T CSMD3 Missense_Mutation p.D1542N 0.36 deleterious(0.03) probably_damaging(0.951) TCGA-O2-A52S-01 8 116599674 116599674 C G TRPS1 Missense_Mutation p.E752Q 0.38 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-O2-A52S-01 8 131165036 131165036 C - ASAP1 Frame_Shift_Del p.W342Cfs*13 0.25 TCGA-O2-A52S-01 8 13162669 13162669 T C DLC1 Intron 0.55 TCGA-O2-A52S-01 8 136659403 136659403 A G KHDRBS3 3'UTR 0.33 TCGA-O2-A52S-01 8 139153517 139153517 G T FAM135B Missense_Mutation p.N1238K 0.41 deleterious(0.03) benign(0.11) TCGA-O2-A52S-01 8 139697540 139697540 C T COL22A1 Missense_Mutation p.E960K 0.38 unknown(0) TCGA-O2-A52S-01 8 16012636 16012636 C A MSR1 Missense_Mutation p.G279C 0.55 deleterious(0) probably_damaging(1) TCGA-O2-A52S-01 8 17067486 17067486 G T ZDHHC2 Missense_Mutation p.G259V 0.50 deleterious(0) probably_damaging(0.997) TCGA-O2-A52S-01 8 23429237 23429237 G T SLC25A37 Missense_Mutation p.A296S 0.64 tolerated(0.55) benign(0.003) TCGA-O2-A52S-01 8 25209342 25209342 C T DOCK5 Silent p.I950I 0.56 TCGA-O2-A52S-01 8 25747370 25747370 T A EBF2 Missense_Mutation p.T217S 0.52 tolerated(0.13) possibly_damaging(0.72) TCGA-O2-A52S-01 8 2857551 2857551 C A CSMD1 Missense_Mutation p.R2711L 0.40 probably_damaging(0.999) TCGA-O2-A52S-01 8 2949091 2949091 C T CSMD1 Missense_Mutation p.R2411H 0.46 probably_damaging(0.999) TCGA-O2-A52S-01 8 43047506 43047506 G A HGSNAT Missense_Mutation p.G437E 0.57 deleterious(0) probably_damaging(0.998) TCGA-O2-A52S-01 8 61178510 61178510 C G CA8 Missense_Mutation p.V131L 0.21 deleterious(0.02) possibly_damaging(0.778) TCGA-O2-A52S-01 8 65494440 65494440 C G BHLHE22 Missense_Mutation p.L365V 0.46 deleterious_low_confidence(0.01) benign(0.028) TCGA-O2-A52S-01 8 68114013 68114013 C G ARFGEF1 Intron 0.43 TCGA-O2-A52S-01 8 87552547 87552547 G A CPNE3 Missense_Mutation p.M206I 0.33 tolerated(0.26) benign(0.142) TCGA-O2-A52S-01 8 87552548 87552548 G T CPNE3 Missense_Mutation p.D207Y 0.34 deleterious(0.02) probably_damaging(0.953) TCGA-O2-A52S-01 8 87755815 87755815 A G CNGB3 Missense_Mutation p.I14T 0.32 tolerated_low_confidence(0.59) benign(0.019) TCGA-O2-A52S-01 8 88885761 88885761 C A DCAF4L2 Missense_Mutation p.V147L 0.33 tolerated(0.36) benign(0.004) TCGA-O2-A52S-01 8 89086956 89086956 G T MMP16 Silent p.R367R 0.33 TCGA-O2-A52S-01 8 92307932 92307932 G T SLC26A7 Splice_Site p.X159_splice 0.35 TCGA-O2-A52S-01 8 92972534 92972534 G T RUNX1T1 Missense_Mutation p.P595Q 0.48 tolerated_low_confidence(0.12) unknown(0) TCGA-O2-A52S-01 8 97620600 97620600 C G SDC2 Missense_Mutation p.S115C 0.42 deleterious(0.02) possibly_damaging(0.903) TCGA-O2-A52S-01 8 97892163 97892163 C A CPQ Missense_Mutation p.A260E 0.35 deleterious(0.03) probably_damaging(0.921) TCGA-O2-A52S-01 8 98078396 98078396 G A CPQ Missense_Mutation p.E405K 0.36 tolerated(0.56) benign(0.219) TCGA-O2-A52S-01 9 100893341 100893341 C T CORO2A Missense_Mutation p.D256N 0.50 tolerated(0.39) benign(0.014) TCGA-O2-A52S-01 9 104449087 104449087 C T GRIN3A Silent p.L365L 0.40 TCGA-O2-A52S-01 9 117093128 117093128 C - ORM2 Frame_Shift_Del p.V106Sfs*23 0.29 TCGA-O2-A52S-01 9 117910 117910 G A FOXD4 Silent p.I70I 0.25 TCGA-O2-A52S-01 9 120476016 120476016 C A TLR4 Missense_Mutation p.T537K 0.44 tolerated(0.3) benign(0.089) TCGA-O2-A52S-01 9 123906238 123906238 A C CNTRL Missense_Mutation p.K977Q 0.29 possibly_damaging(0.703) TCGA-O2-A52S-01 9 125562752 125562752 G C OR1K1 Silent p.A117A 0.40 TCGA-O2-A52S-01 9 128434770 128434770 C G MAPKAP1 Missense_Mutation p.E28D 0.26 tolerated(0.05) probably_damaging(1) TCGA-O2-A52S-01 9 131493620 131493620 C G ZER1 Missense_Mutation p.R766T 0.41 deleterious_low_confidence(0) possibly_damaging(0.879) TCGA-O2-A52S-01 9 131493639 131493639 C G ZER1 Missense_Mutation p.E760Q 0.31 tolerated(0.39) benign(0.107) TCGA-O2-A52S-01 9 133556690 133556690 C T PRDM12 Silent p.V246V 0.23 TCGA-O2-A52S-01 9 134165439 134165439 C A PPAPDC3 Silent p.R19R 0.31 TCGA-O2-A52S-01 9 135203122 135203122 C A SETX Missense_Mutation p.G1288V 0.36 deleterious(0) probably_damaging(0.972) TCGA-O2-A52S-01 9 15920328 15920328 G C CCDC171 Missense_Mutation p.E1221Q 0.52 deleterious(0.01) probably_damaging(0.999) TCGA-O2-A52S-01 9 21971208 21971208 C A CDKN2A Splice_Site p.X51_splice 0.35 TCGA-O2-A52S-01 9 32477062 32477062 G A DDX58 Silent p.L614L 0.34 TCGA-O2-A52S-01 9 33443726 33443726 T C AQP3 Intron 0.13 TCGA-O2-A52S-01 9 36217419 36217419 G A GNE Silent p.P735P 0.22 TCGA-O2-A52S-01 9 37518368 37518368 C T FBXO10 Silent p.G756G 0.43 TCGA-O2-A52S-01 9 43628008 43628008 G T SPATA31A6 Missense_Mutation p.P227T 0.33 tolerated(0.17) probably_damaging(0.939) TCGA-O2-A52S-01 9 80336236 80336236 C A GNAQ 3'UTR 0.37 TCGA-O2-A52S-01 9 84532736 84532736 C A SPATA31D5P RNA 0.26 TCGA-O2-A52S-01 9 84532737 84532737 C A SPATA31D5P RNA 0.26 TCGA-O2-A52S-01 9 95947661 95947661 C A WNK2 Silent p.T150T 0.56 TCGA-O2-A52S-01 X 114864270 114864270 T C PLS3 Missense_Mutation p.I164T 0.36 deleterious(0.01) probably_damaging(0.991) TCGA-O2-A52S-01 X 118374296 118374296 G T PGRMC1 Missense_Mutation p.G118V 0.58 deleterious(0) probably_damaging(0.998) TCGA-O2-A52S-01 X 119513325 119513325 C A ATP1B4 Intron 0.48 TCGA-O2-A52S-01 X 134990286 134990286 G A SAGE1 Missense_Mutation p.D400N 0.62 tolerated(0.6) benign(0.001) TCGA-O2-A52S-01 X 140995895 140995895 C A MAGEC1 Missense_Mutation p.P902H 0.53 deleterious(0.01) unknown(0) TCGA-O2-A52S-01 X 151935615 151935615 G A MAGEA3 Silent p.L184L 0.57 TCGA-O2-A52S-01 X 37587106 37587106 C G XK Silent p.L242L 0.51 TCGA-O2-A52S-01 X 49075091 49075091 A T CACNA1F Missense_Mutation p.I957N 0.56 deleterious(0) probably_damaging(0.973) TCGA-O2-A52S-01 X 70320962 70320962 G T FOXO4 Silent p.G294G 0.70 TCGA-O2-A52S-01 X 70348498 70348498 C T MED12 Silent p.L1135L 0.17 TCGA-O2-A52V-01 10 17142028 17142028 C T CUBN Missense_Mutation p.V581I 0.18 tolerated(0.37) benign(0.052) TCGA-O2-A52V-01 10 17363126 17363126 C A ST8SIA6 Silent p.V316V 0.20 TCGA-O2-A52V-01 10 28260038 28260038 C T ARMC4 Missense_Mutation p.G381S 0.26 tolerated(0.75) benign(0.001) TCGA-O2-A52V-01 10 43015435 43015435 C A ZNF37BP RNA 0.21 TCGA-O2-A52V-01 10 68040257 68040257 C A CTNNA3 Missense_Mutation p.D619Y 0.18 deleterious(0) unknown(0) TCGA-O2-A52V-01 10 89725042 89725042 A T PTEN Splice_Site p.X343_splice 0.29 TCGA-O2-A52V-01 10 93389858 93389858 T C PPP1R3C Silent p.Q260Q 0.29 TCGA-O2-A52V-01 11 103907491 103907491 C A DDI1 5'UTR 0.25 TCGA-O2-A52V-01 11 113285174 113285174 T C DRD2 Missense_Mutation p.T245A 0.05 tolerated(0.54) benign(0.008) TCGA-O2-A52V-01 11 117869879 117869879 G T IL10RA Silent p.S420S 0.27 TCGA-O2-A52V-01 11 125478039 125478039 G A STT3A Silent p.G272G 0.10 TCGA-O2-A52V-01 11 47653213 47653213 G A MTCH2 Silent p.P140P 0.20 TCGA-O2-A52V-01 11 62284327 62284327 G A AHNAK Silent p.S5854S 0.14 TCGA-O2-A52V-01 11 63175589 63175589 C A SLC22A9 Missense_Mutation p.Q432K 0.15 tolerated(0.06) possibly_damaging(0.643) TCGA-O2-A52V-01 11 85445495 85445495 T A SYTL2 Missense_Mutation p.N292Y 0.05 deleterious(0.03) possibly_damaging(0.602) TCGA-O2-A52V-01 12 104107431 104107431 C A STAB2 Silent p.A1474A 0.10 TCGA-O2-A52V-01 12 109522840 109522840 G A USP30 Silent p.A417A 0.15 TCGA-O2-A52V-01 12 110780217 110780217 G T ATP2A2 Missense_Mutation p.R761L 0.22 deleterious(0) probably_damaging(0.996) TCGA-O2-A52V-01 12 18234281 18234281 T A RERGL Silent p.A154A 0.19 TCGA-O2-A52V-01 12 2062097 2062097 G T DCP1B Missense_Mutation p.P337T 0.19 tolerated(0.12) benign(0.009) TCGA-O2-A52V-01 12 20833301 20833301 G T PDE3A 3'UTR 0.22 TCGA-O2-A52V-01 12 23728720 23728720 C G SOX5 Missense_Mutation p.G406A 0.14 tolerated(0.51) benign(0.063) TCGA-O2-A52V-01 12 4870124 4870124 G T GALNT8 Missense_Mutation p.V392L 0.16 deleterious(0) benign(0.338) TCGA-O2-A52V-01 12 49258589 49258589 T A RND1 Missense_Mutation p.E62V 0.19 deleterious(0.02) probably_damaging(0.987) TCGA-O2-A52V-01 12 49742769 49742769 G T DNAJC22 Silent p.L38L 0.12 TCGA-O2-A52V-01 12 63963029 63963029 C A DPY19L2 Nonsense_Mutation p.E701* 0.11 TCGA-O2-A52V-01 12 69107589 69107589 G T NUP107 Splice_Site p.X323_splice 0.14 TCGA-O2-A52V-01 12 6925549 6925549 T A CD4 Missense_Mutation p.V312E 0.13 deleterious(0) probably_damaging(1) TCGA-O2-A52V-01 12 7520683 7520683 C A CD163L1 Missense_Mutation p.V1395F 0.09 deleterious(0.04) probably_damaging(0.979) TCGA-O2-A52V-01 12 81110891 81110891 G A MYF5 Missense_Mutation p.D17N 0.20 deleterious(0) possibly_damaging(0.522) TCGA-O2-A52V-01 12 8673765 8673765 T G CLEC4D Missense_Mutation p.C182W 0.27 deleterious(0) probably_damaging(1) TCGA-O2-A52V-01 12 9305815 9305815 T C PZP Missense_Mutation p.N1300S 0.12 tolerated(0.33) benign(0.001) TCGA-O2-A52V-01 12 97334288 97334288 G T NEDD1 Missense_Mutation p.G414C 0.14 deleterious(0) probably_damaging(0.964) TCGA-O2-A52V-01 12 9840650 9840650 G T CLEC2D Missense_Mutation p.D109Y 0.31 deleterious(0.02) benign(0.273) TCGA-O2-A52V-01 13 103515096 103515096 G T BIVM-ERCC5 Missense_Mutation p.V959L 0.20 tolerated_low_confidence(0.52) possibly_damaging(0.451) TCGA-O2-A52V-01 13 28602314 28602314 C A FLT3 Splice_Site p.X685_splice 0.24 TCGA-O2-A52V-01 13 28866519 28866519 C A PAN3 Missense_Mutation p.L842I 0.19 deleterious(0) possibly_damaging(0.805) TCGA-O2-A52V-01 13 53624904 53624904 T A OLFM4 Nonstop_Mutation p.*511Kext*3 0.19 TCGA-O2-A52V-01 13 53624905 53624905 A T OLFM4 Nonstop_Mutation p.*511Lext*3 0.19 TCGA-O2-A52V-01 13 88329685 88329685 C T SLITRK5 Missense_Mutation p.A681V 0.09 deleterious(0) possibly_damaging(0.623) TCGA-O2-A52V-01 14 100705785 100705785 C A YY1 Silent p.A68A 0.31 TCGA-O2-A52V-01 14 104026118 104026118 T C BAG5 3'UTR 0.21 TCGA-O2-A52V-01 14 106320474 106320474 A G IGHM Missense_Mutation p.S446P 0.16 deleterious(0.01) probably_damaging(0.988) TCGA-O2-A52V-01 14 20248667 20248667 G T OR4M1 Silent p.L62L 0.27 TCGA-O2-A52V-01 14 20404502 20404502 G T OR4K1 Missense_Mutation p.R226L 0.18 deleterious(0.03) benign(0.009) TCGA-O2-A52V-01 14 23885011 23885011 G T MYH7 Missense_Mutation p.R1662S 0.28 deleterious(0) possibly_damaging(0.81) TCGA-O2-A52V-01 14 25076363 25076363 C G GZMH Missense_Mutation p.G197R 0.13 deleterious(0.01) possibly_damaging(0.608) TCGA-O2-A52V-01 14 35008766 35008766 C T EAPP Silent p.L23L 0.17 TCGA-O2-A52V-01 14 52955162 52955162 T C TXNDC16 Missense_Mutation p.I343V 0.25 tolerated(0.7) benign(0.002) TCGA-O2-A52V-01 14 60976134 60976134 C A SIX6 Silent p.I6I 0.19 TCGA-O2-A52V-01 14 67787812 67787813 AG - MPP5 Frame_Shift_Del p.D527Lfs*20 0.14 TCGA-O2-A52V-01 14 74083872 74083872 G T ACOT6 5'UTR 0.21 TCGA-O2-A52V-01 14 92253923 92253923 T C TC2N Missense_Mutation p.S366G 0.25 tolerated(0.49) benign(0.008) TCGA-O2-A52V-01 14 94756800 94756800 G A SERPINA10 Missense_Mutation p.A44V 0.22 tolerated(0.42) benign(0.002) TCGA-O2-A52V-01 14 95090212 95090212 G T SERPINA3 3'UTR 0.30 TCGA-O2-A52V-01 14 95899689 95899689 C A SYNE3 Missense_Mutation p.G866W 0.15 tolerated(0.18) possibly_damaging(0.898) TCGA-O2-A52V-01 14 96157164 96157164 C G TCL1B Missense_Mutation p.P85R 0.19 deleterious(0) probably_damaging(0.999) TCGA-O2-A52V-01 15 28447524 28447524 A G HERC2 Silent p.T2483T 0.08 TCGA-O2-A52V-01 15 29385282 29385282 A G APBA2 Silent p.P358P 0.16 TCGA-O2-A52V-01 15 30019070 30019070 C G TJP1 Missense_Mutation p.R742S 0.12 deleterious(0.01) probably_damaging(0.994) TCGA-O2-A52V-01 15 35178837 35178837 C A AQR Missense_Mutation p.A903S 0.14 tolerated(0.22) benign(0.021) TCGA-O2-A52V-01 15 40675061 40675071 CTGGACAGAGT GTGGGCAGAGG KNSTRN Missense_Mutation p.LDRV9VGRG 0.14 TCGA-O2-A52V-01 15 48064131 48064131 A T SEMA6D 3'UTR 0.10 TCGA-O2-A52V-01 15 64365158 64365158 A G FAM96A Missense_Mutation p.V152A 0.12 deleterious(0) benign(0.351) TCGA-O2-A52V-01 15 65989670 65989670 C T DENND4A Missense_Mutation p.R961K 0.07 tolerated(0.46) benign(0.001) TCGA-O2-A52V-01 15 74328457 74328457 G T PML Intron 0.11 TCGA-O2-A52V-01 15 77473712 77473712 C T PEAK1 Missense_Mutation p.R186Q 0.06 tolerated(0.08) possibly_damaging(0.755) TCGA-O2-A52V-01 15 82512564 82512564 G A EFTUD1 Silent p.L433L 0.18 TCGA-O2-A52V-01 15 89402220 89402220 C A ACAN Missense_Mutation p.A2135E 0.33 deleterious(0.01) possibly_damaging(0.829) TCGA-O2-A52V-01 15 90617437 90617437 C T ZNF710 Silent p.C580C 0.48 TCGA-O2-A52V-01 16 1129065 1129065 T G SSTR5 Missense_Mutation p.L66R 0.17 deleterious(0) probably_damaging(1) TCGA-O2-A52V-01 16 11792081 11792081 C - TXNDC11 Frame_Shift_Del p.G336Afs*6 0.16 TCGA-O2-A52V-01 16 15122856 15122856 G A PDXDC1 Intron 0.15 TCGA-O2-A52V-01 16 20373873 20373873 C G PDILT Silent p.L423L 0.20 TCGA-O2-A52V-01 16 23116788 23116788 T C USP31 Missense_Mutation p.M355V 0.15 tolerated(0.21) benign(0.001) TCGA-O2-A52V-01 16 30768795 30768795 G T C16orf93 3'UTR 0.15 TCGA-O2-A52V-01 16 48174664 48174664 C G ABCC12 Silent p.A197A 0.16 TCGA-O2-A52V-01 16 53679898 53679898 G A RPGRIP1L Silent p.P774P 0.23 TCGA-O2-A52V-01 16 56913540 56913540 C A SLC12A3 Silent p.V474V 0.14 TCGA-O2-A52V-01 16 58011799 58011799 A G TEPP Missense_Mutation p.M82V 0.13 tolerated_low_confidence(0.92) benign(0.002) TCGA-O2-A52V-01 16 70502827 70502827 G T FUK Missense_Mutation p.A247S 0.15 tolerated(0.08) benign(0.305) TCGA-O2-A52V-01 16 84193345 84193345 T C DNAAF1 Silent p.T269T 0.09 TCGA-O2-A52V-01 16 84224773 84224773 C A ADAD2 5'UTR 0.11 TCGA-O2-A52V-01 16 86601587 86601587 G T FOXC2 Nonsense_Mutation p.E216* 0.20 TCGA-O2-A52V-01 16 87678414 87678414 C G JPH3 Nonsense_Mutation p.Y311* 0.20 TCGA-O2-A52V-01 17 10538186 10538186 G A MYH3 Silent p.L1443L 0.17 TCGA-O2-A52V-01 17 18565291 18565291 G A ZNF286B Missense_Mutation p.L510F 0.10 tolerated(0.12) benign(0.201) TCGA-O2-A52V-01 17 33680950 33680950 T C SLFN11 Missense_Mutation p.R443G 0.17 deleterious(0.01) benign(0.216) TCGA-O2-A52V-01 17 41477512 41477512 G T ARL4D Missense_Mutation p.D138Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-O2-A52V-01 17 47247073 47247073 C A B4GALNT2 Missense_Mutation p.L562I 0.15 deleterious(0.03) benign(0.327) TCGA-O2-A52V-01 17 61607577 61607577 T C KCNH6 Missense_Mutation p.S145P 0.16 tolerated(0.16) benign(0.002) TCGA-O2-A52V-01 17 7311902 7311902 C T NLGN2 Silent p.L110L 0.60 TCGA-O2-A52V-01 17 73569684 73569684 G T LLGL2 Missense_Mutation p.G950C 0.09 deleterious(0.04) benign(0.443) TCGA-O2-A52V-01 17 74396332 74396332 C T UBE2O Missense_Mutation p.E351K 0.08 deleterious(0.01) possibly_damaging(0.551) TCGA-O2-A52V-01 17 7578403 7578403 C T TP53 Missense_Mutation p.C176Y 0.21 deleterious(0) probably_damaging(0.995) TCGA-O2-A52V-01 17 78022485 78022485 G A CCDC40 Silent p.E260E 0.09 TCGA-O2-A52V-01 18 13438309 13438309 A G LDLRAD4 Missense_Mutation p.N36S 0.09 deleterious_low_confidence(0.04) benign(0.122) TCGA-O2-A52V-01 18 30092911 30092911 A T WBP11P1 RNA 0.21 TCGA-O2-A52V-01 18 40503607 40503607 T A RIT2 Missense_Mutation p.Q119L 0.22 deleterious(0) benign(0.388) TCGA-O2-A52V-01 18 44435326 44435326 C - PIAS2 Frame_Shift_Del p.K237Sfs*25 0.18 TCGA-O2-A52V-01 18 48190668 48190668 C T MAPK4 Missense_Mutation p.R114C 0.28 deleterious(0) benign(0.015) TCGA-O2-A52V-01 18 59157798 59157798 T C CDH20 Silent p.S4S 0.13 TCGA-O2-A52V-01 19 10226686 10226686 G A EIF3G Silent p.D220D 0.13 TCGA-O2-A52V-01 19 11591435 11591435 C A ELAVL3 5'UTR 0.33 TCGA-O2-A52V-01 19 12089611 12089611 A T ZNF763 Missense_Mutation p.K294I 0.19 deleterious(0) probably_damaging(0.917) TCGA-O2-A52V-01 19 15299971 15299971 C T NOTCH3 Missense_Mutation p.E403K 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-O2-A52V-01 19 19606577 19606577 G A GATAD2A Silent p.R213R 0.22 TCGA-O2-A52V-01 19 19738027 19738027 C G LPAR2 Missense_Mutation p.E23Q 0.22 tolerated(0.48) benign(0.015) TCGA-O2-A52V-01 19 20228924 20228924 C T ZNF90 Silent p.T187T 0.26 TCGA-O2-A52V-01 19 22362364 22362364 T A ZNF676 3'UTR 0.21 TCGA-O2-A52V-01 19 22940362 22940362 A G ZNF99 Silent p.H783H 0.20 TCGA-O2-A52V-01 19 33584385 33584385 C T GPATCH1 Missense_Mutation p.P139S 0.18 tolerated(0.07) benign(0.094) TCGA-O2-A52V-01 19 36002320 36002320 G T DMKN Missense_Mutation p.S304Y 0.19 tolerated(0.46) unknown(0) TCGA-O2-A52V-01 19 367138 367138 G A THEG Silent p.L280L 0.19 TCGA-O2-A52V-01 19 39660293 39660293 G T PAK4 Missense_Mutation p.G34W 0.15 deleterious(0) probably_damaging(1) TCGA-O2-A52V-01 19 45822838 45822838 T C CKM Missense_Mutation p.K45R 0.24 tolerated(0.25) benign(0.014) TCGA-O2-A52V-01 19 46522818 46522818 C T PGLYRP1 Missense_Mutation p.M125I 0.31 tolerated(1) benign(0.001) TCGA-O2-A52V-01 19 50097973 50097973 C A PRR12 Silent p.P127P 0.33 TCGA-O2-A52V-01 19 54080159 54080159 A C ZNF331 Missense_Mutation p.E115D 0.21 tolerated(0.16) benign(0.001) TCGA-O2-A52V-01 19 56163844 56163844 C T CCDC106 Missense_Mutation p.T192I 0.08 deleterious(0) probably_damaging(0.926) TCGA-O2-A52V-01 19 56244248 56244248 C T NLRP9 Missense_Mutation p.A317T 0.17 deleterious(0.01) possibly_damaging(0.521) TCGA-O2-A52V-01 19 5832544 5832544 G A FUT6 Missense_Mutation p.S12L 0.17 tolerated(0.7) benign(0.003) TCGA-O2-A52V-01 19 7606906 7606906 C T PNPLA6 Missense_Mutation p.S411L 0.14 tolerated(0.09) benign(0.003) TCGA-O2-A52V-01 1 114196509 114196509 C A MAGI3 Missense_Mutation p.P833H 0.23 deleterious(0) probably_damaging(0.998) TCGA-O2-A52V-01 1 115576907 115576907 T C TSHB 3'UTR 0.22 TCGA-O2-A52V-01 1 144881485 144881485 T A PDE4DIP Silent p.S1237S 0.07 TCGA-O2-A52V-01 1 145293504 145293504 G T NBPF10 Missense_Mutation p.Q33H 0.07 possibly_damaging(0.782) TCGA-O2-A52V-01 1 151006312 151006312 C G PRUNE Missense_Mutation p.P322A 0.15 deleterious(0.02) probably_damaging(0.996) TCGA-O2-A52V-01 1 153042990 153042990 C T SPRR2B 3'UTR 0.09 TCGA-O2-A52V-01 1 154956277 154956277 G T FLAD1 Missense_Mutation p.R36L 0.19 deleterious_low_confidence(0) benign(0) TCGA-O2-A52V-01 1 157771739 157771739 G T FCRL1 Silent p.A284A 0.18 TCGA-O2-A52V-01 1 182369491 182369491 C T TEDDM1 Missense_Mutation p.V44M 0.12 deleterious(0.02) possibly_damaging(0.759) TCGA-O2-A52V-01 1 184764765 184764765 C A FAM129A Silent p.A711A 0.16 TCGA-O2-A52V-01 1 202932224 202932225 GC - CYB5R1 Frame_Shift_Del p.K238Nfs*34 0.11 TCGA-O2-A52V-01 1 211486308 211486308 G T RCOR3 Intron 0.19 TCGA-O2-A52V-01 1 216850740 216850740 C G ESRRG Silent p.T55T 0.14 TCGA-O2-A52V-01 1 228466897 228466897 G T OBSCN Missense_Mutation p.R2812L 0.25 benign(0.292) TCGA-O2-A52V-01 1 228505401 228505401 G T OBSCN Missense_Mutation p.G5557C 0.16 probably_damaging(0.999) TCGA-O2-A52V-01 1 235973755 235973755 T A LYST Missense_Mutation p.K121N 0.18 deleterious_low_confidence(0.02) probably_damaging(0.961) TCGA-O2-A52V-01 1 243328471 243328471 G A CEP170 Missense_Mutation p.P931S 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-O2-A52V-01 1 247582313 247582313 T A NLRP3 Missense_Mutation p.W73R 0.15 tolerated(0.56) possibly_damaging(0.819) TCGA-O2-A52V-01 1 247588518 247588518 C T NLRP3 Silent p.Y591Y 0.22 TCGA-O2-A52V-01 1 247695758 247695758 G T OR2C3 Missense_Mutation p.S19Y 0.15 deleterious(0) probably_damaging(0.996) TCGA-O2-A52V-01 1 248551750 248551750 C A OR2T6 Missense_Mutation p.L281I 0.09 tolerated(0.18) benign(0.35) TCGA-O2-A52V-01 1 248616525 248616525 T G OR2T2 Missense_Mutation p.L143V 0.13 tolerated(0.12) benign(0.063) TCGA-O2-A52V-01 1 40557750 40557750 T C PPT1 Missense_Mutation p.N110S 0.10 deleterious(0) probably_damaging(0.961) TCGA-O2-A52V-01 1 57044602 57044602 C G PPAP2B Missense_Mutation p.G30R 0.15 tolerated(0.52) benign(0.049) TCGA-O2-A52V-01 1 65858246 65858246 G A DNAJC6 Missense_Mutation p.G534E 0.11 tolerated(0.5) possibly_damaging(0.636) TCGA-O2-A52V-01 1 67109257 67109257 G T SGIP1 Missense_Mutation p.S105I 0.21 deleterious(0) probably_damaging(0.974) TCGA-O2-A52V-01 1 75055242 75055242 G A C1orf173 Intron 0.23 TCGA-O2-A52V-01 1 78444684 78444684 G A FUBP1 Missense_Mutation p.A2V 0.18 deleterious(0.02) benign(0) TCGA-O2-A52V-01 1 78958464 78958464 T A PTGFR Silent p.P12P 0.19 TCGA-O2-A52V-01 1 89618109 89618109 G A GBP7 Missense_Mutation p.S156L 0.09 deleterious(0) probably_damaging(0.923) TCGA-O2-A52V-01 20 2291013 2291013 C A TGM3 Missense_Mutation p.S124Y 0.15 tolerated(0.09) benign(0.013) TCGA-O2-A52V-01 20 30193329 30193329 G T ID1 Missense_Mutation p.G47W 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-O2-A52V-01 20 3740766 3740766 G A C20orf27 5'UTR 0.13 TCGA-O2-A52V-01 20 44006180 44006180 G A TP53TG5 Missense_Mutation p.T41M 0.17 tolerated(1) benign(0.004) TCGA-O2-A52V-01 20 57415423 57415423 C G RP4-806M20.3 5'Flank 0.19 TCGA-O2-A52V-01 20 61522321 61522321 C G DIDO1 Missense_Mutation p.E1178Q 0.20 probably_damaging(0.998) TCGA-O2-A52V-01 20 644773 644773 C T SCRT2 Missense_Mutation p.A156T 0.24 tolerated(1) benign(0.019) TCGA-O2-A52V-01 21 26961144 26961144 T A MRPL39 Intron 0.24 TCGA-O2-A52V-01 21 45941937 45941937 G A TSPEAR Silent p.F465F 0.10 TCGA-O2-A52V-01 22 17688023 17688023 G A CECR1 Silent p.S160S 0.08 TCGA-O2-A52V-01 22 23634805 23634805 G T BCR Missense_Mutation p.A954S 0.15 tolerated(0.24) benign(0.031) TCGA-O2-A52V-01 22 24094942 24094942 G C VPREB3 3'UTR 0.40 TCGA-O2-A52V-01 22 32621730 32621730 T G SLC5A4 Missense_Mutation p.H454P 0.12 deleterious(0.03) probably_damaging(0.974) TCGA-O2-A52V-01 22 37962419 37962419 G T CDC42EP1 Silent p.V21V 0.29 TCGA-O2-A52V-01 22 41252587 41252587 T A ST13 5'UTR 0.43 TCGA-O2-A52V-01 22 43471518 43471518 C A TTLL1 Missense_Mutation p.W25C 0.14 deleterious(0) probably_damaging(0.998) TCGA-O2-A52V-01 2 103125333 103125333 T C SLC9A4 Missense_Mutation p.Y477H 0.24 deleterious(0) probably_damaging(1) TCGA-O2-A52V-01 2 107002806 107002806 G T PLGLA RNA 0.17 TCGA-O2-A52V-01 2 116534814 116534814 C T DPP10 Silent p.L422L 0.20 TCGA-O2-A52V-01 2 120223416 120223416 C A SCTR Missense_Mutation p.S151I 0.13 deleterious(0) probably_damaging(0.96) TCGA-O2-A52V-01 2 152472564 152472564 A G NEB Silent p.D3747D 0.18 TCGA-O2-A52V-01 2 152695798 152695798 C A CACNB4 Missense_Mutation p.R466S 0.16 tolerated_low_confidence(0.14) benign(0.08) TCGA-O2-A52V-01 2 155157967 155157967 G T GALNT13 Missense_Mutation p.V341F 0.16 deleterious(0) probably_damaging(0.946) TCGA-O2-A52V-01 2 179582109 179582109 T C TTN Missense_Mutation p.E8451G 0.16 TCGA-O2-A52V-01 2 179582110 179582110 C T TTN Splice_Site p.X8451_splice 0.16 TCGA-O2-A52V-01 2 183627515 183627515 A G DNAJC10 Missense_Mutation p.Y751C 0.13 tolerated(0.14) probably_damaging(0.942) TCGA-O2-A52V-01 2 190557860 190557860 A T ANKAR Nonsense_Mutation p.K422* 0.17 TCGA-O2-A52V-01 2 227662321 227662321 C A IRS1 Silent p.P378P 0.24 TCGA-O2-A52V-01 2 234368846 234368846 G C DGKD Missense_Mutation p.E946Q 0.11 deleterious(0) possibly_damaging(0.665) TCGA-O2-A52V-01 2 242169675 242169680 GAATGT - HDLBP In_Frame_Del p.D1160_R1162delinsG 0.17 TCGA-O2-A52V-01 2 242695264 242695265 - T D2HGDH Frame_Shift_Ins p.M381Ifs*37 0.20 TCGA-O2-A52V-01 2 27353564 27353564 G A ABHD1 Silent p.G390G 0.18 TCGA-O2-A52V-01 2 48873902 48873902 G T STON1-GTF2A1L Missense_Mutation p.L937F 0.16 tolerated(0.07) possibly_damaging(0.538) TCGA-O2-A52V-01 2 54081989 54081990 - T GPR75 5'UTR 0.15 TCGA-O2-A52V-01 2 61505553 61505553 A T USP34 Nonsense_Mutation p.L1761* 0.18 TCGA-O2-A52V-01 2 70406679 70406679 T A C2orf42 Nonsense_Mutation p.K307* 0.25 TCGA-O2-A52V-01 2 71788901 71788901 C T DYSF Missense_Mutation p.H746Y 0.20 deleterious(0.01) benign(0.002) TCGA-O2-A52V-01 2 73717784 73717784 G T ALMS1 Missense_Mutation p.V2899L 0.19 benign(0.047) TCGA-O2-A52V-01 2 9514965 9514965 G T ASAP2 Missense_Mutation p.K546N 0.11 tolerated(0.08) possibly_damaging(0.609) TCGA-O2-A52V-01 2 96789896 96789896 G A ASTL Missense_Mutation p.A330V 0.19 tolerated_low_confidence(0.24) benign(0.004) TCGA-O2-A52V-01 2 99012724 99012724 C A CNGA3 Missense_Mutation p.T364N 0.18 deleterious(0) probably_damaging(0.999) TCGA-O2-A52V-01 3 110845068 110845068 G T PVRL3 Missense_Mutation p.D319Y 0.16 deleterious(0) possibly_damaging(0.832) TCGA-O2-A52V-01 3 11302058 11302058 C G HRH1 Missense_Mutation p.C445W 0.19 tolerated(0.18) probably_damaging(0.928) TCGA-O2-A52V-01 3 119378781 119378781 G A POPDC2 Missense_Mutation p.R164W 0.14 deleterious(0) probably_damaging(1) TCGA-O2-A52V-01 3 119379301 119379301 C T POPDC2 5'UTR 0.17 TCGA-O2-A52V-01 3 120673859 120673859 G T STXBP5L Missense_Mutation p.G88W 0.22 deleterious(0) probably_damaging(1) TCGA-O2-A52V-01 3 126216959 126216959 G C UROC1 Missense_Mutation p.P518R 0.25 deleterious(0.04) probably_damaging(1) TCGA-O2-A52V-01 3 132175662 132175662 C T DNAJC13 Silent p.F445F 0.10 TCGA-O2-A52V-01 3 138724326 138724326 C A PRR23A Missense_Mutation p.R262L 0.38 tolerated(0.07) unknown(0) TCGA-O2-A52V-01 3 140251316 140251316 G T CLSTN2 Missense_Mutation p.A499S 0.14 deleterious(0) probably_damaging(1) TCGA-O2-A52V-01 3 141884401 141884401 G A GK5 3'UTR 0.10 TCGA-O2-A52V-01 3 155203421 155203421 C A PLCH1 Missense_Mutation p.V908L 0.08 tolerated(0.38) benign(0.019) TCGA-O2-A52V-01 3 183017818 183017818 A G MCF2L2 Missense_Mutation p.L427S 0.09 deleterious(0) probably_damaging(0.944) TCGA-O2-A52V-01 3 18456728 18456728 T G SATB1 Splice_Site p.X172_splice 0.14 TCGA-O2-A52V-01 3 186442906 186442906 G A KNG1 Missense_Mutation p.D141N 0.21 tolerated(0.55) benign(0.001) TCGA-O2-A52V-01 3 194080865 194080865 T G LRRC15 Missense_Mutation p.N309T 0.32 deleterious(0) probably_damaging(1) TCGA-O2-A52V-01 3 195245831 195245831 C A PPP1R2 Silent p.T185T 0.11 TCGA-O2-A52V-01 3 44396267 44396267 A T TCAIM 5'UTR 0.24 TCGA-O2-A52V-01 3 52425602 52425602 C A DNAH1 Missense_Mutation p.N3345K 0.14 probably_damaging(1) TCGA-O2-A52V-01 3 52432149 52432149 G T DNAH1 Missense_Mutation p.M4020I 0.24 possibly_damaging(0.734) TCGA-O2-A52V-01 3 53159993 53159993 G A RFT1 Silent p.I27I 0.45 TCGA-O2-A52V-01 3 97868440 97868440 G C OR5H14 Missense_Mutation p.A71P 0.18 deleterious(0) possibly_damaging(0.836) TCGA-O2-A52V-01 4 108641396 108641396 C A PAPSS1 5'UTR 0.21 TCGA-O2-A52V-01 4 111470519 111470519 A T ENPEP Missense_Mutation p.Q723H 0.18 tolerated(0.16) benign(0.049) TCGA-O2-A52V-01 4 153332781 153332781 C A FBXW7 Missense_Mutation p.V59F 0.26 tolerated_low_confidence(0.07) unknown(0) TCGA-O2-A52V-01 4 175158560 175158560 T - FBXO8 3'UTR 0.22 TCGA-O2-A52V-01 4 183674675 183674675 G T TENM3 Missense_Mutation p.G1312V 0.27 deleterious(0) benign(0.095) TCGA-O2-A52V-01 4 187517794 187517794 C A FAT1 Silent p.A4300A 0.16 TCGA-O2-A52V-01 4 2896361 2896361 G C ADD1 Missense_Mutation p.G215A 0.12 tolerated(0.19) probably_damaging(1) TCGA-O2-A52V-01 4 47514535 47514535 C G ATP10D 5'UTR 0.30 TCGA-O2-A52V-01 4 57181694 57181694 C A KIAA1211 Missense_Mutation p.L676M 0.23 tolerated(0.06) possibly_damaging(0.82) TCGA-O2-A52V-01 4 57215433 57215433 C A AASDH Silent p.V828V 0.16 TCGA-O2-A52V-01 4 57221561 57221561 C A AASDH Missense_Mutation p.G297V 0.18 deleterious(0) probably_damaging(0.999) TCGA-O2-A52V-01 4 70504678 70504678 C A UGT2A2 Silent p.L227L 0.17 TCGA-O2-A52V-01 5 110836662 110836662 C T STARD4 Intron 0.22 TCGA-O2-A52V-01 5 114480382 114480382 C G TRIM36 Missense_Mutation p.R228S 0.08 deleterious(0.01) possibly_damaging(0.635) TCGA-O2-A52V-01 5 134131746 134131746 A C DDX46 Silent p.G620G 0.09 TCGA-O2-A52V-01 5 139574128 139574128 G C CYSTM1 Missense_Mutation p.M26I 0.19 tolerated_low_confidence(0.39) unknown(0) TCGA-O2-A52V-01 5 140719984 140719984 C T PCDHGA2 Silent p.N482N 0.11 TCGA-O2-A52V-01 5 140783253 140783253 G C PCDHGA9 Missense_Mutation p.R245P 0.16 tolerated_low_confidence(1) benign(0) TCGA-O2-A52V-01 5 149607839 149607839 C T CAMK2A Missense_Mutation p.D385N 0.17 deleterious_low_confidence(0.03) benign(0.113) TCGA-O2-A52V-01 5 149607840 149607840 G T CAMK2A Nonsense_Mutation p.C384* 0.17 TCGA-O2-A52V-01 5 162918262 162918262 G T HMMR 3'UTR 0.18 TCGA-O2-A52V-01 5 176003084 176003084 C T CDHR2 Silent p.T364T 0.37 TCGA-O2-A52V-01 5 178139836 178139836 T C ZNF354A Missense_Mutation p.H348R 0.13 deleterious(0.01) benign(0.012) TCGA-O2-A52V-01 5 19544030 19544030 G C CDH18 Silent p.L446L 0.14 TCGA-O2-A52V-01 5 24509681 24509681 G T CDH10 Missense_Mutation p.P417H 0.09 deleterious(0.02) benign(0.005) TCGA-O2-A52V-01 5 39390555 39390555 G A DAB2 Silent p.T151T 0.22 TCGA-O2-A52V-01 5 50123800 50123800 C T PARP8 Missense_Mutation p.P667L 0.20 deleterious(0.03) benign(0.029) TCGA-O2-A52V-01 5 68849444 68849444 C A OCLN Missense_Mutation p.S505R 0.18 deleterious(0.02) probably_damaging(0.957) TCGA-O2-A52V-01 5 72469250 72469250 C A TMEM174 Silent p.I60I 0.12 TCGA-O2-A52V-01 5 76028543 76028543 G T F2R Missense_Mutation p.G165C 0.18 deleterious(0) probably_damaging(1) TCGA-O2-A52V-01 5 7727317 7727317 C T ADCY2 Missense_Mutation p.T605I 0.11 deleterious(0.02) benign(0.01) TCGA-O2-A52V-01 5 78416312 78416312 T C BHMT Missense_Mutation p.L142P 0.17 tolerated(0.06) benign(0.07) TCGA-O2-A52V-01 5 79374776 79374776 T C THBS4 Silent p.D766D 0.20 TCGA-O2-A52V-01 5 79375049 79375049 C A THBS4 Silent p.R827R 0.09 TCGA-O2-A52V-01 5 82817063 82817063 A T VCAN Nonsense_Mutation p.K980* 0.13 TCGA-O2-A52V-01 5 83239082 83239082 C A EDIL3 3'UTR 0.38 TCGA-O2-A52V-01 5 90024600 90024600 G A GPR98 Missense_Mutation p.A3426T 0.08 probably_damaging(0.945) TCGA-O2-A52V-01 5 90041504 90041504 A C GPR98 Missense_Mutation p.K3622N 0.12 benign(0.192) TCGA-O2-A52V-01 6 102483392 102483392 G A GRIK2 Silent p.Q754Q 0.11 TCGA-O2-A52V-01 6 110048332 110048332 G T FIG4 Missense_Mutation p.G104C 0.17 deleterious(0) probably_damaging(1) TCGA-O2-A52V-01 6 132695830 132695830 G T MOXD1 Missense_Mutation p.H117Q 0.15 deleterious(0) possibly_damaging(0.791) TCGA-O2-A52V-01 6 142409380 142409380 G T NMBR Missense_Mutation p.A139D 0.19 deleterious(0) probably_damaging(0.969) TCGA-O2-A52V-01 6 143074781 143074781 C T HIVEP2 Silent p.G2268G 0.08 TCGA-O2-A52V-01 6 155504484 155504484 G C TIAM2 Missense_Mutation p.A972P 0.16 tolerated(0.17) benign(0.013) TCGA-O2-A52V-01 6 159457214 159457214 G A TAGAP Missense_Mutation p.T614I 0.22 deleterious(0.02) benign(0.012) TCGA-O2-A52V-01 6 165806137 165806137 C G PDE10A Missense_Mutation p.E552Q 0.18 deleterious(0) probably_damaging(0.972) TCGA-O2-A52V-01 6 25826718 25826718 A C SLC17A1 Missense_Mutation p.S60A 0.06 deleterious(0.03) possibly_damaging(0.765) TCGA-O2-A52V-01 6 32780880 32780880 G A HLA-DOB 3'UTR 0.18 TCGA-O2-A52V-01 6 47471132 47471132 G A CD2AP Missense_Mutation p.E41K 0.21 deleterious(0.01) possibly_damaging(0.7) TCGA-O2-A52V-01 6 47501344 47501344 A G CD2AP Missense_Mutation p.K58E 0.22 deleterious(0.02) benign(0.027) TCGA-O2-A52V-01 6 57512897 57512897 A T PRIM2 3'UTR 0.19 TCGA-O2-A52V-01 6 74078417 74078417 C A OOEP 3'Flank 0.27 TCGA-O2-A52V-01 7 112461669 112461669 C A C7orf60 3'UTR 0.16 TCGA-O2-A52V-01 7 11415450 11415450 A T THSD7A Missense_Mutation p.L1649I 0.11 deleterious(0) probably_damaging(0.996) TCGA-O2-A52V-01 7 121701384 121701384 G T PTPRZ1 3'UTR 0.12 TCGA-O2-A52V-01 7 133580444 133580444 C T EXOC4 Silent p.C609C 0.16 TCGA-O2-A52V-01 7 141629872 141629872 G A CLEC5A 3'UTR 0.28 TCGA-O2-A52V-01 7 150440070 150440070 G C GIMAP5 Missense_Mutation p.L281F 0.16 tolerated(0.71) benign(0.427) TCGA-O2-A52V-01 7 151049920 151049920 C G NUB1 Missense_Mutation p.Q147E 0.14 tolerated(0.19) possibly_damaging(0.878) TCGA-O2-A52V-01 7 1539625 1539625 G A INTS1 Silent p.S193S 0.29 TCGA-O2-A52V-01 7 24663311 24663311 A T MPP6 Missense_Mutation p.T9S 0.19 tolerated(0.78) benign(0.004) TCGA-O2-A52V-01 7 48311503 48311503 A G ABCA13 Missense_Mutation p.N747S 0.22 benign(0.047) TCGA-O2-A52V-01 7 86416029 86416029 G A GRM3 Silent p.E307E 0.08 TCGA-O2-A52V-01 7 89903374 89903374 A G C7orf63 Missense_Mutation p.I312V 0.18 tolerated(0.08) benign(0.069) TCGA-O2-A52V-01 7 92761278 92761278 C T SAMD9L Missense_Mutation p.R1336K 0.04 tolerated(1) benign(0.005) TCGA-O2-A52V-01 8 119122374 119122374 C A EXT1 Missense_Mutation p.W304C 0.22 deleterious(0) probably_damaging(0.995) TCGA-O2-A52V-01 8 119123193 119123193 C T EXT1 Silent p.S31S 0.13 TCGA-O2-A52V-01 8 133920579 133920579 G T TG Missense_Mutation p.Q1332H 0.24 tolerated(0.95) benign(0.006) TCGA-O2-A52V-01 8 141542669 141542669 G A AGO2 Missense_Mutation p.R773C 0.13 tolerated(0.23) benign(0.003) TCGA-O2-A52V-01 8 142476595 142476595 C T MROH5 3'UTR 0.22 TCGA-O2-A52V-01 8 144999855 144999855 C T PLEC Silent p.Q1551Q 0.40 TCGA-O2-A52V-01 8 145065576 145065576 G T GRINA Missense_Mutation p.S62I 0.36 tolerated_low_confidence(0.41) unknown(0) TCGA-O2-A52V-01 8 17611553 17611553 C A MTUS1 Silent p.V588V 0.26 TCGA-O2-A52V-01 8 39068673 39068673 G T ADAM32 Missense_Mutation p.G355C 0.21 deleterious(0) probably_damaging(1) TCGA-O2-A52V-01 8 48761961 48761961 C G PRKDC Missense_Mutation p.S2369T 0.18 benign(0.008) TCGA-O2-A52V-01 8 61654167 61654167 C G CHD7 Missense_Mutation p.T59S 0.23 benign(0.292) TCGA-O2-A52V-01 8 82591435 82591435 C A IMPA1 Silent p.G135G 0.13 TCGA-O2-A52V-01 8 86352046 86352046 G T CA3 Missense_Mutation p.W47L 0.23 tolerated(1) possibly_damaging(0.645) TCGA-O2-A52V-01 9 103334882 103334882 A T TMEFF1 Missense_Mutation p.T328S 0.25 tolerated(0.14) benign(0.352) TCGA-O2-A52V-01 9 114448949 114448949 A G C9orf84 3'UTR 0.17 TCGA-O2-A52V-01 9 21971062 21971063 CG A CDKN2A Frame_Shift_Del p.R99Wfs*47 0.28 TCGA-O2-A52V-01 9 22451444 22451444 G T DMRTA1 Missense_Mutation p.R350L 0.23 deleterious(0.01) benign(0.067) TCGA-O2-A52V-01 9 23762156 23762156 G T ELAVL2 Nonsense_Mutation p.S26* 0.21 TCGA-O2-A52V-01 9 71509429 71509429 A G PIP5K1B Missense_Mutation p.K216E 0.31 deleterious(0.04) probably_damaging(0.989) TCGA-O2-A52V-01 9 82333773 82333773 G T TLE4 Missense_Mutation p.V493L 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-O2-A52V-01 X 101969940 101969940 C A GPRASP2 Missense_Mutation p.A48E 0.12 deleterious(0) possibly_damaging(0.756) TCGA-O2-A52V-01 X 108652277 108652277 G C GUCY2F Missense_Mutation p.Q638E 0.19 tolerated(1) benign(0.001) TCGA-O2-A52V-01 X 119048695 119048695 G A AKAP14 Missense_Mutation p.V99I 0.20 tolerated(0.06) benign(0.094) TCGA-O2-A52V-01 X 119500469 119500469 G C ATP1B4 Silent p.S51S 0.10 TCGA-O2-A52V-01 X 119660468 119660468 T A CUL4B 3'Flank 0.24 TCGA-O2-A52V-01 X 119663989 119663989 C T CUL4B Missense_Mutation p.E872K 0.16 deleterious(0.03) probably_damaging(0.973) TCGA-O2-A52V-01 X 122538734 122538734 G T GRIA3 Missense_Mutation p.W490L 0.19 deleterious(0.01) possibly_damaging(0.854) TCGA-O2-A52V-01 X 123020098 123020098 G T XIAP Missense_Mutation p.D196Y 0.18 deleterious(0) probably_damaging(1) TCGA-O2-A52V-01 X 123870897 123870897 G T TENM1 Missense_Mutation p.P229Q 0.17 tolerated_low_confidence(0.17) probably_damaging(0.984) TCGA-O2-A52V-01 X 128657239 128657239 C A SMARCA1 Nonsense_Mutation p.E37* 0.18 TCGA-O2-A52V-01 X 129053191 129053191 A G UTP14A Missense_Mutation p.H193R 0.20 deleterious(0.04) benign(0.028) TCGA-O2-A52V-01 X 129205205 129205205 T A ELF4 Missense_Mutation p.S207C 0.23 deleterious(0) possibly_damaging(0.798) TCGA-O2-A52V-01 X 129546413 129546413 C T RBMX2 Missense_Mutation p.S187L 0.21 deleterious(0.04) benign(0.013) TCGA-O2-A52V-01 X 129768976 129768976 C T ENOX2 Silent p.L496L 0.10 TCGA-O2-A52V-01 X 129837155 129837155 G A ENOX2 Silent p.A41A 0.23 TCGA-O2-A52V-01 X 134992218 134992218 G T SAGE1 Nonsense_Mutation p.E585* 0.24 TCGA-O2-A52V-01 X 139866529 139866529 C A CDR1 Translation_Start_Site p.M1? 0.27 tolerated(0.06) benign(0.043) TCGA-O2-A52V-01 X 140993498 140993498 C G MAGEC1 Missense_Mutation p.P103R 0.22 deleterious_low_confidence(0) benign(0) TCGA-O2-A52V-01 X 21874837 21874837 C T YY2 Missense_Mutation p.L79F 0.16 tolerated(0.06) benign(0.003) TCGA-O2-A52V-01 X 27997692 27997692 G T DCAF8L1 Missense_Mutation p.S587Y 0.17 deleterious(0.01) benign(0.387) TCGA-O2-A52V-01 X 2873518 2873518 G T ARSE Silent p.A82A 0.22 TCGA-O2-A52V-01 X 3021931 3021931 G T ARSF Missense_Mutation p.A411S 0.19 tolerated(0.16) benign(0.391) TCGA-O2-A52V-01 X 30873270 30873270 G A TAB3 Missense_Mutation p.A171V 0.19 tolerated(0.1) benign(0.002) TCGA-O2-A52V-01 X 35938023 35938023 G A CXorf22 Missense_Mutation p.R36K 0.17 tolerated(1) benign(0.002) TCGA-O2-A52V-01 X 37026515 37026515 G T FAM47C Missense_Mutation p.S11I 0.32 tolerated(0.06) benign(0.263) TCGA-O2-A52V-01 X 41413117 41413117 G T CASK Missense_Mutation p.P632T 0.17 deleterious(0) probably_damaging(1) TCGA-O2-A52V-01 X 43817980 43817980 C G NDP 5'UTR 0.11 TCGA-O2-A52V-01 X 46844294 46844294 G T JADE3 5'UTR 0.11 TCGA-O2-A52V-01 X 49021305 49021305 G A MAGIX Silent p.L128L 0.21 TCGA-O2-A52V-01 X 51637831 51637831 C T MAGED1 Missense_Mutation p.R52C 0.15 deleterious_low_confidence(0) unknown(0) TCGA-O2-A52V-01 X 53223686 53223686 G A KDM5C Missense_Mutation p.P1225S 0.10 tolerated(0.43) benign(0.002) TCGA-O2-A52V-01 X 53589881 53589881 C T HUWE1 Missense_Mutation p.S2372N 0.12 benign(0.444) TCGA-O2-A52V-01 X 63488765 63488765 G T MTMR8 Silent p.S589S 0.18 TCGA-O2-A52V-01 X 65392279 65392279 G T HEPH Missense_Mutation p.D138Y 0.19 deleterious(0.01) possibly_damaging(0.516) TCGA-O2-A52V-01 X 69622489 69622489 G C KIF4A Missense_Mutation p.E855Q 0.13 tolerated(0.15) possibly_damaging(0.864) TCGA-O2-A52V-01 X 73423509 73423509 G C RP3-368A4.5 RNA 0.13 TCGA-O2-A52V-01 X 74648976 74648976 G A ZDHHC15 Silent p.Y180Y 0.21 TCGA-O2-A52V-01 X 75649940 75649940 C A MAGEE1 Missense_Mutation p.H539Q 0.18 deleterious(0.01) probably_damaging(0.941) TCGA-O2-A52V-01 X 75649941 75649941 C A MAGEE1 Missense_Mutation p.L540M 0.16 tolerated(0.18) probably_damaging(1) TCGA-O2-A52V-01 X 79932165 79932165 T C BRWD3 Silent p.R1784R 0.21 TCGA-O2-A52V-01 X 89177403 89177403 C A TGIF2LX Missense_Mutation p.R107S 0.17 tolerated(0.05) probably_damaging(0.993) TCGA-O2-A52V-01 X 92965108 92965108 C A FAM133A Missense_Mutation p.H230Q 0.18 deleterious_low_confidence(0) unknown(0) TCGA-O2-A52W-01 10 13489266 13489266 C A BEND7 Missense_Mutation p.G361C 0.35 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-O2-A52W-01 10 38240993 38240994 TT - ZNF25 3'UTR 0.81 TCGA-O2-A52W-01 10 50396339 50396339 C G C10orf128 Missense_Mutation p.D15H 0.29 tolerated(0.2) probably_damaging(0.997) TCGA-O2-A52W-01 10 50833612 50833612 C G CHAT Silent p.L282L 0.20 TCGA-O2-A52W-01 11 10327210 10327213 TCTT - ADM 5'UTR 0.39 TCGA-O2-A52W-01 11 111922044 111922046 TTC - DLAT In_Frame_Del p.S497del 0.39 TCGA-O2-A52W-01 11 18956484 18956484 A G MRGPRX1 5'UTR 0.83 TCGA-O2-A52W-01 11 2943376 2943378 GGA - SLC22A18 In_Frame_Del p.E305del 0.12 TCGA-O2-A52W-01 11 51412094 51412094 A G OR4A5 Missense_Mutation p.I101T 0.35 tolerated_low_confidence(0.31) benign(0.014) TCGA-O2-A52W-01 11 76370711 76370713 GAG - LRRC32 In_Frame_Del p.L642del 0.19 TCGA-O2-A52W-01 11 7670063 7670063 G A PPFIBP2 Silent p.K610K 0.13 TCGA-O2-A52W-01 11 89028499 89028499 G C TYR Missense_Mutation p.E519Q 0.13 tolerated(0.08) benign(0.022) TCGA-O2-A52W-01 11 9868532 9868534 CTT - SBF2 In_Frame_Del p.E968del 0.31 TCGA-O2-A52W-01 12 104487307 104487307 T C HCFC2 Silent p.N476N 0.21 TCGA-O2-A52W-01 12 105509005 105509005 G T KIAA1033 Missense_Mutation p.G122V 0.17 tolerated(0.05) probably_damaging(0.991) TCGA-O2-A52W-01 12 109186471 109186473 AAG - SSH1 In_Frame_Del p.F494del 0.13 TCGA-O2-A52W-01 12 109673117 109673117 G C ACACB Splice_Site p.X1450_splice 0.12 TCGA-O2-A52W-01 12 113624547 113624547 G A RITA1 5'UTR 0.16 TCGA-O2-A52W-01 12 129569276 129569276 G T TMEM132D Intron 0.25 TCGA-O2-A52W-01 12 394528 394528 G A KDM5A 3'UTR 0.21 TCGA-O2-A52W-01 12 48084300 48084300 C A RPAP3 Splice_Site p.X223_splice 0.22 TCGA-O2-A52W-01 12 49397054 49397054 G T PRKAG1 Missense_Mutation p.T263N 0.13 deleterious(0.05) benign(0.004) TCGA-O2-A52W-01 12 49427469 49427472 AAGG - KMT2D Frame_Shift_Del p.F3672Lfs*76 0.15 TCGA-O2-A52W-01 12 49431082 49431082 G A KMT2D Nonsense_Mutation p.Q3353* 0.15 TCGA-O2-A52W-01 12 49431988 49431988 C A KMT2D Missense_Mutation p.A3051S 0.18 probably_damaging(0.985) TCGA-O2-A52W-01 12 49431989 49431989 C A KMT2D Silent p.L3050L 0.18 TCGA-O2-A52W-01 12 55421088 55421088 A T NEUROD4 Missense_Mutation p.S289C 0.22 deleterious(0.02) benign(0.285) TCGA-O2-A52W-01 12 57828897 57828897 G A INHBC Silent p.L76L 0.23 TCGA-O2-A52W-01 12 6646988 6646990 ATG - GAPDH In_Frame_Del p.D257del 0.21 TCGA-O2-A52W-01 12 6701685 6701687 TCC - CHD4 In_Frame_Del p.E940del 0.10 TCGA-O2-A52W-01 12 6884485 6884485 C T LAG3 Silent p.S276S 0.09 TCGA-O2-A52W-01 13 106118558 106118558 G T DAOA 5'Flank 0.13 TCGA-O2-A52W-01 13 77640204 77640205 TT - MYCBP2 Frame_Shift_Del p.H4122Lfs*17 0.11 TCGA-O2-A52W-01 14 20528897 20528897 G C OR4L1 Missense_Mutation p.G232R 0.21 deleterious(0.05) benign(0.35) TCGA-O2-A52W-01 14 44975098 44975098 C A FSCB Missense_Mutation p.A365S 0.29 tolerated(0.35) benign(0.233) TCGA-O2-A52W-01 14 64464030 64464030 C T SYNE2 Missense_Mutation p.T1055I 0.18 benign(0.017) TCGA-O2-A52W-01 14 96998917 96998917 C T PAPOLA Missense_Mutation p.T256I 0.26 tolerated(0.13) probably_damaging(0.964) TCGA-O2-A52W-01 15 27185073 27185073 C T GABRA5 Silent p.G242G 0.14 TCGA-O2-A52W-01 15 28000567 28000567 G C OCA2 Silent p.L828L 0.25 TCGA-O2-A52W-01 15 52676481 52676481 C A MYO5A Missense_Mutation p.K597N 0.17 tolerated(0.22) benign(0.41) TCGA-O2-A52W-01 15 65687503 65687503 T A IGDCC4 Missense_Mutation p.Y502F 0.07 tolerated(0.13) benign(0.38) TCGA-O2-A52W-01 15 82335531 82335531 C A MEX3B Silent p.A560A 0.17 TCGA-O2-A52W-01 16 22545878 22545878 C T NPIPB5 Missense_Mutation p.S525L 0.03 deleterious_low_confidence(0) possibly_damaging(0.637) TCGA-O2-A52W-01 16 27481463 27481463 C T GTF3C1 Missense_Mutation p.D1594N 0.08 deleterious(0) probably_damaging(1) TCGA-O2-A52W-01 17 17700515 17700516 TG - RAI1 Frame_Shift_Del p.S1419Ffs*3 0.14 TCGA-O2-A52W-01 17 19680963 19680963 C G ULK2 Missense_Mutation p.A995P 0.35 deleterious(0) probably_damaging(1) TCGA-O2-A52W-01 17 33324773 33324773 C T LIG3 Missense_Mutation p.R614W 0.07 deleterious(0) probably_damaging(1) TCGA-O2-A52W-01 17 3920838 3920838 C A ZZEF1 Missense_Mutation p.V2610L 0.27 deleterious(0.04) benign(0.126) TCGA-O2-A52W-01 17 4926781 4926781 G A KIF1C Missense_Mutation p.E883K 0.36 tolerated_low_confidence(0.7) benign(0.002) TCGA-O2-A52W-01 17 51901438 51901438 G T KIF2B Silent p.L348L 0.12 TCGA-O2-A52W-01 17 63223456 63223456 T C RGS9 Silent p.D652D 0.08 TCGA-O2-A52W-01 17 65989341 65989341 C T C17orf58 5'UTR 0.30 TCGA-O2-A52W-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.37 deleterious(0) probably_damaging(1) TCGA-O2-A52W-01 17 78317030 78317030 G A RNF213 Missense_Mutation p.V2030M 0.19 probably_damaging(0.936) TCGA-O2-A52W-01 17 79914891 79914891 A G NOTUM Missense_Mutation p.L252P 0.09 deleterious(0.04) probably_damaging(0.932) TCGA-O2-A52W-01 18 22807375 22807375 G T ZNF521 Silent p.T169T 0.14 TCGA-O2-A52W-01 18 47803111 47803111 G A MBD1 Silent p.C132C 0.05 TCGA-O2-A52W-01 19 2290679 2290679 C A LINGO3 Missense_Mutation p.R366L 0.45 deleterious(0) probably_damaging(0.995) TCGA-O2-A52W-01 19 22939074 22939074 C A ZNF99 3'Flank 0.38 TCGA-O2-A52W-01 19 34884665 34884665 G C GPI Missense_Mutation p.A311P 0.10 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-O2-A52W-01 19 44611771 44611771 T C ZNF224 Silent p.C486C 0.25 TCGA-O2-A52W-01 19 45783993 45783996 GTGA - MARK4 Splice_Site p.X426_splice 0.08 TCGA-O2-A52W-01 19 51017884 51017884 C T ASPDH 5'Flank 0.32 TCGA-O2-A52W-01 19 51205724 51205724 C A SHANK1 Missense_Mutation p.V583L 0.19 possibly_damaging(0.739) TCGA-O2-A52W-01 19 51298124 51298125 CT - ACPT Frame_Shift_Del p.C357Sfs*26 0.15 TCGA-O2-A52W-01 19 55147827 55147827 G A AC009892.10 Intron 0.17 TCGA-O2-A52W-01 19 55363470 55363470 T - KIR3DL2 Frame_Shift_Del p.F30Sfs*56 0.23 TCGA-O2-A52W-01 19 8436249 8436249 T A ANGPTL4 Silent p.G294G 0.39 TCGA-O2-A52W-01 19 8842130 8842130 T C OR2Z1 Missense_Mutation p.V247A 0.17 tolerated(0.08) benign(0.059) TCGA-O2-A52W-01 1 10364153 10364154 CT - KIF1B Intron 0.22 TCGA-O2-A52W-01 1 10502392 10502393 AG - APITD1-CORT Intron 0.19 TCGA-O2-A52W-01 1 111957763 111957763 T C OVGP1 Missense_Mutation p.T454A 0.18 tolerated(0.24) benign(0.007) TCGA-O2-A52W-01 1 156255479 156255479 C A TMEM79 Silent p.G154G 0.14 TCGA-O2-A52W-01 1 15964800 15964800 A C DDI2 Splice_Site p.X211_splice 0.13 TCGA-O2-A52W-01 1 159889464 159889465 CA - TAGLN2 Frame_Shift_Del p.V114Gfs*27 0.11 TCGA-O2-A52W-01 1 176934324 176934324 C A ASTN1 Nonsense_Mutation p.E525* 0.23 TCGA-O2-A52W-01 1 180885825 180885825 G A KIAA1614 Missense_Mutation p.D196N 0.31 deleterious(0.04) benign(0.058) TCGA-O2-A52W-01 1 18691929 18691929 C A IGSF21 Silent p.T251T 0.26 TCGA-O2-A52W-01 1 216420004 216420004 G T USH2A Missense_Mutation p.T911N 0.13 benign(0.049) TCGA-O2-A52W-01 1 2452178 2452178 C A PANK4 Missense_Mutation p.G197V 0.17 deleterious(0) probably_damaging(1) TCGA-O2-A52W-01 1 29485904 29485904 G A SRSF4 Silent p.C115C 0.44 TCGA-O2-A52W-01 1 32131521 32131521 G A COL16A1 Nonsense_Mutation p.R1140* 0.17 TCGA-O2-A52W-01 1 36644055 36644055 C T MAP7D1 Missense_Mutation p.P582S 0.15 probably_damaging(1) TCGA-O2-A52W-01 1 44401726 44401727 CT - ARTN Intron 0.26 TCGA-O2-A52W-01 1 65332616 65332618 CCA - JAK1 In_Frame_Del p.G308del 0.09 TCGA-O2-A52W-01 1 79383737 79383737 T C ELTD1 Splice_Site p.X488_splice 0.34 TCGA-O2-A52W-01 1 89486216 89486216 C T GBP3 Silent p.K63K 0.35 TCGA-O2-A52W-01 20 32677646 32677647 AG - EIF2S2 Frame_Shift_Del p.Y298Ffs*10 0.13 TCGA-O2-A52W-01 20 3557640 3557640 G A ATRN Silent p.L783L 0.25 TCGA-O2-A52W-01 20 3897679 3897679 A G PANK2 Silent p.R506R 0.15 TCGA-O2-A52W-01 20 57767545 57767545 C T ZNF831 Nonsense_Mutation p.Q491* 0.19 TCGA-O2-A52W-01 20 61588314 61588314 G T SLC17A9 Missense_Mutation p.R86L 0.25 deleterious(0) possibly_damaging(0.849) TCGA-O2-A52W-01 22 24135773 24135773 G T SMARCB1 Missense_Mutation p.S87I 0.26 deleterious(0.01) benign(0.374) TCGA-O2-A52W-01 22 46655314 46655316 GTT - PKDREJ In_Frame_Del p.N1302del 0.22 TCGA-O2-A52W-01 22 50719308 50719310 GAA - PLXNB2 In_Frame_Del p.F1286del 0.37 TCGA-O2-A52W-01 2 167262327 167262327 C A SCN7A Missense_Mutation p.L1604F 0.23 deleterious(0) benign(0.169) TCGA-O2-A52W-01 2 172325517 172325518 TG - DCAF17 Frame_Shift_Del p.A321Pfs*22 0.08 TCGA-O2-A52W-01 2 211512651 211512651 A T CPS1 Missense_Mutation p.Y1075F 0.07 tolerated(0.09) benign(0.005) TCGA-O2-A52W-01 2 21257715 21257715 T C APOB Missense_Mutation p.K293E 0.26 possibly_damaging(0.718) TCGA-O2-A52W-01 2 230643604 230643604 T C TRIP12 Missense_Mutation p.S1658G 0.30 tolerated(0.13) benign(0.014) TCGA-O2-A52W-01 2 234545397 234545397 T A UGT1A10 Missense_Mutation p.Y77N 0.32 deleterious(0) possibly_damaging(0.905) TCGA-O2-A52W-01 2 238661973 238661973 G T LRRFIP1 Nonsense_Mutation p.E169* 0.20 TCGA-O2-A52W-01 2 71190729 71190729 C A ATP6V1B1 Missense_Mutation p.T363K 0.29 deleterious(0) probably_damaging(0.962) TCGA-O2-A52W-01 2 80782891 80782891 G A CTNNA2 Silent p.R538R 0.25 TCGA-O2-A52W-01 2 98887199 98887199 G T VWA3B Missense_Mutation p.Q966H 0.18 deleterious(0.03) possibly_damaging(0.687) TCGA-O2-A52W-01 2 98887200 98887200 G T VWA3B Missense_Mutation p.A967S 0.18 tolerated(0.06) possibly_damaging(0.601) TCGA-O2-A52W-01 3 105421209 105421211 GGA - CBLB In_Frame_Del p.P564del 0.21 TCGA-O2-A52W-01 3 122578962 122578964 CTC - DIRC2 In_Frame_Del p.L353del 0.08 TCGA-O2-A52W-01 3 141497043 141497043 C G GRK7 5'UTR 0.16 TCGA-O2-A52W-01 3 184071133 184071133 G T CLCN2 Silent p.R645R 0.20 TCGA-O2-A52W-01 3 193349400 193349400 G T OPA1 Splice_Site p.X246_splice 0.14 TCGA-O2-A52W-01 3 19940284 19940284 C T EFHB Missense_Mutation p.R519H 0.21 tolerated(0.39) benign(0.002) TCGA-O2-A52W-01 3 58062997 58062997 G A FLNB Missense_Mutation p.A173T 0.28 deleterious(0) probably_damaging(1) TCGA-O2-A52W-01 4 367372 367372 G T ZNF141 Silent p.L382L 0.34 TCGA-O2-A52W-01 4 71099791 71099791 C T FDCSP Missense_Mutation p.P49S 0.35 tolerated_low_confidence(0.07) possibly_damaging(0.803) TCGA-O2-A52W-01 4 77003285 77003285 A T ART3 Silent p.R126R 0.36 TCGA-O2-A52W-01 4 79351464 79351464 G C FRAS1 Missense_Mutation p.R1621T 0.37 benign(0.001) TCGA-O2-A52W-01 4 8022014 8022014 C T ABLIM2 Silent p.R428R 0.17 TCGA-O2-A52W-01 4 8230168 8230168 C T SH3TC1 Missense_Mutation p.A916V 0.54 tolerated(0.1) benign(0.009) TCGA-O2-A52W-01 4 96127873 96127873 C T UNC5C Missense_Mutation p.R603H 0.37 tolerated(0.1) benign(0.244) TCGA-O2-A52W-01 5 114607071 114607071 G A CCDC112 Missense_Mutation p.R391C 0.22 tolerated(0.07) benign(0.057) TCGA-O2-A52W-01 5 13922303 13922303 G A DNAH5 Silent p.D191D 0.18 TCGA-O2-A52W-01 5 140530553 140530553 C T PCDHB6 Missense_Mutation p.P239S 0.39 deleterious(0) possibly_damaging(0.737) TCGA-O2-A52W-01 5 141041253 141041277 ATAGAGATGCCCAATGAGGGTGGCC - ARAP3 Frame_Shift_Del p.A1032Gfs*8 0.09 TCGA-O2-A52W-01 5 180668577 180668579 GAG - GNB2L1 In_Frame_Del p.S115del 0.18 TCGA-O2-A52W-01 5 31267787 31267787 C A CDH6 Silent p.S69S 0.20 TCGA-O2-A52W-01 5 32074211 32074211 A G PDZD2 Missense_Mutation p.D1000G 0.12 tolerated(0.12) benign(0.002) TCGA-O2-A52W-01 5 35921206 35921206 C T CAPSL Missense_Mutation p.R6H 0.24 deleterious(0) probably_damaging(0.96) TCGA-O2-A52W-01 5 7706895 7706895 G T ADCY2 Missense_Mutation p.R383L 0.10 deleterious(0) probably_damaging(1) TCGA-O2-A52W-01 5 79968160 79968160 T C MSH3 Missense_Mutation p.L297P 0.37 deleterious(0) probably_damaging(1) TCGA-O2-A52W-01 5 95103754 95103754 A G RHOBTB3 Missense_Mutation p.N389S 0.17 tolerated(0.56) benign(0.017) TCGA-O2-A52W-01 5 95103830 95103830 T C RHOBTB3 Silent p.L414L 0.31 TCGA-O2-A52W-01 6 121482121 121482121 C A TBC1D32 Silent p.R884R 0.22 TCGA-O2-A52W-01 6 121482122 121482122 C A TBC1D32 Missense_Mutation p.R884L 0.22 deleterious(0) probably_damaging(1) TCGA-O2-A52W-01 6 123130252 123130252 A G SMPDL3A Missense_Mutation p.Y354C 0.24 deleterious(0) probably_damaging(0.987) TCGA-O2-A52W-01 6 133118220 133118220 C T SLC18B1 Nonsense_Mutation p.W28* 0.28 TCGA-O2-A52W-01 6 29080330 29080330 T C OR2J3 Silent p.Y221Y 0.31 TCGA-O2-A52W-01 6 76018589 76018589 G A FILIP1 Missense_Mutation p.R1154W 0.13 deleterious(0) probably_damaging(0.998) TCGA-O2-A52W-01 6 87725612 87725612 C T HTR1E Missense_Mutation p.T187M 0.26 deleterious(0) probably_damaging(1) TCGA-O2-A52W-01 7 100880897 100880898 AG - CLDN15 5'UTR 0.39 TCGA-O2-A52W-01 7 102939132 102939132 G A PMPCB Missense_Mutation p.D73N 0.06 tolerated(0.49) benign(0.008) TCGA-O2-A52W-01 7 103029472 103029473 CA - SLC26A5 Frame_Shift_Del p.V499Dfs*17 0.13 TCGA-O2-A52W-01 7 141619304 141619304 C A OR9A4 Missense_Mutation p.S210Y 0.13 deleterious(0) probably_damaging(0.992) TCGA-O2-A52W-01 7 156752688 156752688 C T NOM1 Silent p.F484F 0.22 TCGA-O2-A52W-01 7 87011819 87011819 C T CROT Nonsense_Mutation p.Q449* 0.22 TCGA-O2-A52W-01 7 97614189 97614189 T A OCM2 3'UTR 0.30 TCGA-O2-A52W-01 8 131812818 131812818 C T ADCY8 Missense_Mutation p.E972K 0.08 deleterious(0) benign(0.4) TCGA-O2-A52W-01 8 139163748 139163748 G C FAM135B Silent p.T990T 0.18 TCGA-O2-A52W-01 8 142444922 142444922 A T PTP4A3 3'Flank 0.34 TCGA-O2-A52W-01 8 145616199 145616199 G T ADCK5 Missense_Mutation p.E162D 0.17 deleterious(0) probably_damaging(0.995) TCGA-O2-A52W-01 8 24771361 24771361 G A NEFM Missense_Mutation p.E19K 0.24 tolerated(0.08) unknown(0) TCGA-O2-A52W-01 8 42924792 42924793 TA - FNTA Frame_Shift_Del p.Y166Sfs*6 0.23 TCGA-O2-A52W-01 8 99264801 99264801 A G NIPAL2 Missense_Mutation p.L89P 0.20 deleterious(0.02) probably_damaging(0.966) TCGA-O2-A52W-01 9 21207100 21207100 G A IFNA10 5'UTR 0.10 TCGA-O2-A52W-01 9 27296987 27296987 T C EQTN Missense_Mutation p.T23A 0.36 tolerated(0.63) benign(0.098) TCGA-O2-A52W-01 9 84607515 84607515 G T SPATA31D1 Silent p.L710L 0.35 TCGA-O2-A52W-01 X 100497370 100497370 G C DRP2 Silent p.L295L 0.43 TCGA-O2-A52W-01 X 140993367 140993367 G T MAGEC1 Missense_Mutation p.E59D 0.46 tolerated_low_confidence(0.07) benign(0.217) TCGA-O2-A52W-01 X 20181139 20181139 T C RPS6KA3 Missense_Mutation p.Y595C 0.46 deleterious(0) probably_damaging(0.986) TCGA-O2-A52W-01 X 70342606 70342606 T C MED12 Missense_Mutation p.V456A 0.20 probably_damaging(0.999) TCGA-O2-A52W-01 X 78427472 78427472 A T GPR174 Missense_Mutation p.H323L 0.55 tolerated(0.05) benign(0.036) TCGA-O2-A5IB-01 10 102732986 102732986 C T SEMA4G Silent p.A75A 0.80 TCGA-O2-A5IB-01 10 124671215 124671215 C A FAM24A Missense_Mutation p.A22D 0.78 deleterious(0) probably_damaging(0.979) TCGA-O2-A5IB-01 10 51465242 51465242 T C AGAP7 Missense_Mutation p.Y405C 0.07 tolerated(0.1) benign(0.394) TCGA-O2-A5IB-01 10 75567759 75567759 T A NDST2 Missense_Mutation p.N130Y 0.82 deleterious(0.02) benign(0.003) TCGA-O2-A5IB-01 10 76732338 76732338 A G KAT6B Missense_Mutation p.I334M 0.88 probably_damaging(0.998) TCGA-O2-A5IB-01 11 100221526 100221526 A G CNTN5 Missense_Mutation p.I1042V 0.84 tolerated(0.28) benign(0.034) TCGA-O2-A5IB-01 11 125791175 125791175 C T DDX25 Missense_Mutation p.R431C 0.93 deleterious(0.01) probably_damaging(0.999) TCGA-O2-A5IB-01 11 126141478 126141478 G A FOXRED1 Missense_Mutation p.V78M 0.87 deleterious(0.01) probably_damaging(0.972) TCGA-O2-A5IB-01 11 130785163 130785163 C T SNX19 Silent p.V224V 0.85 TCGA-O2-A5IB-01 11 30033828 30033828 T C KCNA4 Missense_Mutation p.E133G 0.40 tolerated_low_confidence(0.31) benign(0.008) TCGA-O2-A5IB-01 11 3038423 3038423 G A CARS Silent p.L610L 0.48 TCGA-O2-A5IB-01 11 3123437 3123437 G A OSBPL5 Silent p.S467S 0.27 TCGA-O2-A5IB-01 11 43465070 43465070 A G TTC17 Missense_Mutation p.D816G 0.37 tolerated(0.36) benign(0.293) TCGA-O2-A5IB-01 11 5275717 5275717 C A HBG2 Missense_Mutation p.Q40H 0.24 deleterious(0.02) possibly_damaging(0.479) TCGA-O2-A5IB-01 11 56237940 56237940 G C OR5M3 Missense_Mutation p.L12V 0.43 deleterious(0) probably_damaging(0.91) TCGA-O2-A5IB-01 11 59634002 59634002 C A TCN1 5'UTR 0.48 TCGA-O2-A5IB-01 11 64855644 64855644 G T ZFPL1 3'UTR 0.42 TCGA-O2-A5IB-01 11 65397053 65397053 A T PCNXL3 Missense_Mutation p.T1355S 0.42 tolerated(1) benign(0.005) TCGA-O2-A5IB-01 11 68359130 68359130 G C PPP6R3 Missense_Mutation p.E624D 0.27 tolerated(0.25) benign(0.044) TCGA-O2-A5IB-01 11 69456096 69456096 C G CCND1 Silent p.L5L 0.05 TCGA-O2-A5IB-01 11 7064782 7064782 G A NLRP14 Missense_Mutation p.E509K 0.51 deleterious(0.01) possibly_damaging(0.606) TCGA-O2-A5IB-01 11 71946725 71946725 T - INPPL1 Frame_Shift_Del p.I889Tfs*69 0.40 TCGA-O2-A5IB-01 11 92533816 92533816 T G FAT3 Missense_Mutation p.I2546R 0.82 probably_damaging(0.962) TCGA-O2-A5IB-01 12 114793571 114793571 G T TBX5 Silent p.G441G 0.32 TCGA-O2-A5IB-01 12 115118952 115118952 C T TBX3 Splice_Site p.X130_splice 0.36 TCGA-O2-A5IB-01 12 117672480 117672480 G - NOS1 Frame_Shift_Del p.P1076Lfs*8 0.21 TCGA-O2-A5IB-01 12 123466377 123466377 C T ARL6IP4 Silent p.P263P 0.61 TCGA-O2-A5IB-01 12 125398188 125398188 T A UBC Missense_Mutation p.I44F 0.48 tolerated(0.06) possibly_damaging(0.551) TCGA-O2-A5IB-01 12 129442132 129442132 G - GLT1D1 Frame_Shift_Del p.N196Mfs*5 0.36 TCGA-O2-A5IB-01 12 129563227 129563227 A T TMEM132D Missense_Mutation p.I656N 0.35 deleterious(0) possibly_damaging(0.894) TCGA-O2-A5IB-01 12 130921546 130921546 G C RIMBP2 Silent p.G632G 0.44 TCGA-O2-A5IB-01 12 22623846 22623846 C A C2CD5 Splice_Site p.X787_splice 0.50 TCGA-O2-A5IB-01 12 25148758 25148758 C A C12orf77 Silent p.L130L 0.37 TCGA-O2-A5IB-01 12 31246192 31246192 G T DDX11 Missense_Mutation p.A435S 0.42 deleterious(0.01) possibly_damaging(0.468) TCGA-O2-A5IB-01 12 41327678 41327678 A T CNTN1 Missense_Mutation p.Q328L 0.39 deleterious(0.01) benign(0.067) TCGA-O2-A5IB-01 12 43826499 43826499 C A ADAMTS20 Missense_Mutation p.D946Y 0.61 deleterious(0) probably_damaging(0.959) TCGA-O2-A5IB-01 12 49717698 49717698 C A TROAP Missense_Mutation p.A72D 0.86 deleterious(0.02) possibly_damaging(0.668) TCGA-O2-A5IB-01 12 52077965 52077965 T C SCN8A Missense_Mutation p.V95A 1.00 deleterious(0.01) benign(0.04) TCGA-O2-A5IB-01 12 53662951 53662951 G A ESPL1 Silent p.L75L 0.28 TCGA-O2-A5IB-01 12 57867847 57867847 C T ARHGAP9 Silent p.L632L 0.35 TCGA-O2-A5IB-01 12 66221783 66221783 A T HMGA2 Missense_Mutation p.E38D 0.47 deleterious(0.02) possibly_damaging(0.523) TCGA-O2-A5IB-01 12 68707433 68707433 G T MDM1 Missense_Mutation p.P534T 0.37 deleterious(0) probably_damaging(1) TCGA-O2-A5IB-01 12 68720432 68720432 C T MDM1 Intron 0.30 TCGA-O2-A5IB-01 12 7867879 7867879 C G DPPA3 Silent p.L61L 0.28 TCGA-O2-A5IB-01 12 94965086 94965086 C G TMCC3 3'UTR 0.38 TCGA-O2-A5IB-01 12 94965087 94965087 C A TMCC3 3'UTR 0.38 TCGA-O2-A5IB-01 13 46276970 46276970 A T SPERT Missense_Mutation p.I46F 0.85 deleterious_low_confidence(0.05) benign(0.004) TCGA-O2-A5IB-01 13 49039505 49039505 G C RB1 Splice_Site p.X830_splice 0.79 TCGA-O2-A5IB-01 13 49742881 49742881 A G FNDC3A Silent p.Q390Q 0.81 TCGA-O2-A5IB-01 14 105609133 105609133 C A JAG2 Missense_Mutation p.G1206C 0.43 tolerated(0.06) benign(0.003) TCGA-O2-A5IB-01 14 20389666 20389666 A T OR4K5 Missense_Mutation p.I301F 0.37 deleterious(0.03) benign(0.13) TCGA-O2-A5IB-01 14 20944688 20944688 A G PNP Silent p.Q266Q 0.42 TCGA-O2-A5IB-01 14 21498710 21498710 C A TPPP2 5'UTR 0.70 TCGA-O2-A5IB-01 14 26918128 26918128 T G NOVA1 Silent p.I187I 0.39 TCGA-O2-A5IB-01 14 52495569 52495569 C A NID2 Splice_Site p.X801_splice 0.37 TCGA-O2-A5IB-01 14 55518442 55518442 G T MAPK1IP1L 5'UTR 0.46 TCGA-O2-A5IB-01 14 55903359 55903359 G T TBPL2 Missense_Mutation p.D176E 0.50 tolerated(0.41) benign(0.004) TCGA-O2-A5IB-01 14 58048009 58048009 C A SLC35F4 Missense_Mutation p.A280S 0.62 deleterious(0) probably_damaging(1) TCGA-O2-A5IB-01 14 91044487 91044487 G T TTC7B Missense_Mutation p.A758D 0.23 deleterious(0) benign(0.077) TCGA-O2-A5IB-01 14 92471290 92471290 C T TRIP11 Silent p.K1010K 0.32 TCGA-O2-A5IB-01 15 32921875 32921875 A T ARHGAP11A Silent p.S339S 0.83 TCGA-O2-A5IB-01 15 42133074 42133074 C A PLA2G4B Silent p.R339R 0.50 TCGA-O2-A5IB-01 15 78212561 78212561 C A RP11-114H24.7 Intron 0.54 TCGA-O2-A5IB-01 15 84611424 84611424 C A ADAMTSL3 Missense_Mutation p.H732N 0.32 deleterious(0.03) benign(0.3) TCGA-O2-A5IB-01 15 89155120 89155120 C A MIR7-2 RNA 0.50 TCGA-O2-A5IB-01 15 91769442 91769442 C T SV2B 5'UTR 0.48 TCGA-O2-A5IB-01 16 15225385 15225385 T G RP11-1186N24.5 RNA 0.90 TCGA-O2-A5IB-01 16 22446041 22446041 C T RRN3P3 RNA 0.72 TCGA-O2-A5IB-01 16 31500252 31500252 G A SLC5A2 Silent p.V444V 0.67 TCGA-O2-A5IB-01 16 67270978 67270978 G A FHOD1 Missense_Mutation p.P345S 0.04 tolerated(0.08) benign(0) TCGA-O2-A5IB-01 16 67335757 67335757 C T KCTD19 Missense_Mutation p.E238K 0.46 deleterious(0) probably_damaging(0.998) TCGA-O2-A5IB-01 17 11725907 11725907 G A DNAH9 Silent p.E3001E 0.87 TCGA-O2-A5IB-01 17 18034126 18034126 T C MYO15A Splice_Site p.X1346_splice 0.38 TCGA-O2-A5IB-01 17 18151947 18151957 AGAACTCTGGG - FLII Frame_Shift_Del p.P700Gfs*9 0.34 TCGA-O2-A5IB-01 17 18158539 18158539 T C FLII Silent p.G95G 0.46 TCGA-O2-A5IB-01 17 28534826 28534826 A T SLC6A4 Missense_Mutation p.V525E 0.40 deleterious(0) probably_damaging(0.962) TCGA-O2-A5IB-01 17 28599773 28599773 T G BLMH Missense_Mutation p.I316L 0.20 tolerated(0.43) benign(0.353) TCGA-O2-A5IB-01 17 29679367 29679367 G T NF1 Missense_Mutation p.R2517L 0.47 tolerated_low_confidence(0.08) probably_damaging(0.968) TCGA-O2-A5IB-01 17 37374383 37374383 C A STAC2 Missense_Mutation p.R45L 0.52 deleterious(0) probably_damaging(0.998) TCGA-O2-A5IB-01 17 40825575 40825575 C G PLEKHH3 Splice_Site p.X164_splice 0.09 TCGA-O2-A5IB-01 17 46675534 46675534 C T HOXB6 5'UTR 0.65 TCGA-O2-A5IB-01 17 48650042 48650042 G - CACNA1G Frame_Shift_Del p.G293Afs*71 0.41 TCGA-O2-A5IB-01 17 62796980 62796980 C A PLEKHM1P RNA 0.36 TCGA-O2-A5IB-01 17 67189716 67189716 A G ABCA10 Missense_Mutation p.I520T 0.53 deleterious(0.02) possibly_damaging(0.6) TCGA-O2-A5IB-01 17 79867398 79867398 T C PCYT2 Missense_Mutation p.H57R 0.45 deleterious(0.04) probably_damaging(0.983) TCGA-O2-A5IB-01 17 8167787 8167787 G A PFAS Splice_Site p.X640_splice 0.78 TCGA-O2-A5IB-01 18 31325328 31325328 C T ASXL3 Missense_Mutation p.T1839I 0.05 benign(0.093) TCGA-O2-A5IB-01 18 33785223 33785223 T C MOCOS Missense_Mutation p.I401T 0.72 tolerated(0.11) benign(0.056) TCGA-O2-A5IB-01 18 40554044 40554044 C T RIT2 Missense_Mutation p.G77S 0.35 deleterious(0) probably_damaging(0.944) TCGA-O2-A5IB-01 18 40850324 40850324 G T SYT4 Missense_Mutation p.H420Q 0.69 deleterious(0) probably_damaging(1) TCGA-O2-A5IB-01 18 40851710 40851710 G A SYT4 Missense_Mutation p.H313Y 0.76 deleterious(0.01) probably_damaging(0.939) TCGA-O2-A5IB-01 18 54281787 54281787 G A TXNL1 Silent p.P201P 0.25 TCGA-O2-A5IB-01 18 72344567 72344567 C G ZNF407 Missense_Mutation p.T531R 0.24 tolerated(0.1) benign(0.122) TCGA-O2-A5IB-01 18 9263810 9263810 C A ANKRD12 Nonsense_Mutation p.S1896* 0.68 TCGA-O2-A5IB-01 19 10071073 10071073 C A COL5A3 3'UTR 0.35 TCGA-O2-A5IB-01 19 10748940 10748940 G T SLC44A2 Missense_Mutation p.R626S 0.47 tolerated(0.29) benign(0.044) TCGA-O2-A5IB-01 19 12015587 12015587 A T ZNF69 Silent p.S111S 0.48 TCGA-O2-A5IB-01 19 12575104 12575104 G A ZNF709 Silent p.S544S 0.42 TCGA-O2-A5IB-01 19 13246762 13246762 A C NACC1 Silent p.A247A 0.44 TCGA-O2-A5IB-01 19 15061175 15061175 T C SLC1A6 Silent p.V509V 0.36 TCGA-O2-A5IB-01 19 16664639 16664639 G A SLC35E1 Missense_Mutation p.R362W 0.38 tolerated(0.17) benign(0.004) TCGA-O2-A5IB-01 19 22785613 22785613 C A AC011467.1 3'Flank 0.32 TCGA-O2-A5IB-01 19 22785614 22785614 C A AC011467.1 3'Flank 0.33 TCGA-O2-A5IB-01 19 23544547 23544547 C A ZNF91 Missense_Mutation p.G412C 0.75 deleterious(0) probably_damaging(0.994) TCGA-O2-A5IB-01 19 36501768 36501768 G T ALKBH6 Intron 0.29 TCGA-O2-A5IB-01 19 38949961 38949961 C T RYR1 Silent p.S781S 0.49 TCGA-O2-A5IB-01 19 39798689 39798689 C T LRFN1 Missense_Mutation p.E634K 0.41 tolerated(0.88) benign(0.001) TCGA-O2-A5IB-01 19 4446703 4446703 C T UBXN6 Silent p.E238E 0.51 TCGA-O2-A5IB-01 19 44777240 44777240 G A ZNF233 Missense_Mutation p.V143M 0.39 tolerated(0.18) benign(0.002) TCGA-O2-A5IB-01 19 46307674 46307674 G C RSPH6A Missense_Mutation p.L497V 0.52 deleterious(0.03) possibly_damaging(0.876) TCGA-O2-A5IB-01 19 49925854 49925854 C A PTH2 Missense_Mutation p.R58S 0.71 tolerated_low_confidence(0.74) benign(0.003) TCGA-O2-A5IB-01 19 51165120 51165120 G C SHANK1 3'UTR 0.30 TCGA-O2-A5IB-01 19 55014134 55014134 C T LAIR2 5'UTR 0.07 TCGA-O2-A5IB-01 19 9272112 9272112 G T ZNF317 3'UTR 0.30 TCGA-O2-A5IB-01 1 10709245 10709245 C A CASZ1 Missense_Mutation p.G1014C 0.45 deleterious(0) probably_damaging(0.992) TCGA-O2-A5IB-01 1 107691418 107691418 C T NTNG1 Missense_Mutation p.P68L 0.47 deleterious(0.01) probably_damaging(1) TCGA-O2-A5IB-01 1 109270478 109270478 G T FNDC7 Missense_Mutation p.R387I 0.48 deleterious(0.02) possibly_damaging(0.477) TCGA-O2-A5IB-01 1 11562091 11562091 A G PTCHD2 Missense_Mutation p.R348G 0.20 deleterious(0.02) probably_damaging(0.996) TCGA-O2-A5IB-01 1 12907876 12907876 T A HNRNPCL1 Missense_Mutation p.K89N 0.09 deleterious(0.02) benign(0.022) TCGA-O2-A5IB-01 1 145414860 145414860 C A HFE2 Missense_Mutation p.L27M 0.18 deleterious(0.01) unknown(0) TCGA-O2-A5IB-01 1 152277135 152277135 T A FLG Silent p.R3409R 0.20 TCGA-O2-A5IB-01 1 15541738 15541738 A T TMEM51 Missense_Mutation p.E52V 0.27 tolerated(0.08) benign(0.004) TCGA-O2-A5IB-01 1 156214690 156214690 A G PAQR6 Missense_Mutation p.W102R 0.08 deleterious_low_confidence(0.02) possibly_damaging(0.503) TCGA-O2-A5IB-01 1 156628358 156628358 C A BCAN Missense_Mutation p.L821M 0.16 deleterious(0.01) possibly_damaging(0.658) TCGA-O2-A5IB-01 1 157551333 157551333 G T FCRL4 Silent p.R413R 0.77 TCGA-O2-A5IB-01 1 157740209 157740209 T C FCRL2 Missense_Mutation p.I100M 0.75 deleterious(0.03) benign(0.326) TCGA-O2-A5IB-01 1 161488841 161488841 C A FCGR2A 3'UTR 0.07 TCGA-O2-A5IB-01 1 161641217 161641217 C T FCGR2B Nonsense_Mutation p.Q57* 0.09 TCGA-O2-A5IB-01 1 165797073 165797073 G T UCK2 Translation_Start_Site p.M1? 0.72 tolerated_low_confidence(0.05) probably_damaging(0.914) TCGA-O2-A5IB-01 1 167381485 167381485 G T POU2F1 Missense_Mutation p.M615I 0.75 deleterious(0.03) unknown(0) TCGA-O2-A5IB-01 1 167381486 167381486 G T POU2F1 Missense_Mutation p.A616S 0.75 deleterious(0.01) unknown(0) TCGA-O2-A5IB-01 1 169510343 169510343 T A F5 Missense_Mutation p.T1329S 0.14 tolerated_low_confidence(0.33) benign(0.001) TCGA-O2-A5IB-01 1 173579349 173579349 C A ANKRD45 Missense_Mutation p.V246L 0.78 tolerated(0.12) benign(0.023) TCGA-O2-A5IB-01 1 175067715 175067715 C A TNN Missense_Mutation p.D701E 0.17 tolerated(0.14) benign(0.103) TCGA-O2-A5IB-01 1 200818157 200818157 A T CAMSAP2 Missense_Mutation p.R754W 0.53 deleterious(0) probably_damaging(0.952) TCGA-O2-A5IB-01 1 200827036 200827036 G T CAMSAP2 Missense_Mutation p.G1429V 0.36 deleterious(0) probably_damaging(0.994) TCGA-O2-A5IB-01 1 202861639 202861639 C G KLHL12 3'UTR 0.44 TCGA-O2-A5IB-01 1 203186949 203186949 C G CHIT1 Missense_Mutation p.W358C 0.43 deleterious(0.01) probably_damaging(1) TCGA-O2-A5IB-01 1 207782674 207782674 A T CR1 Missense_Mutation p.D1979V 0.46 tolerated(0.23) probably_damaging(0.971) TCGA-O2-A5IB-01 1 21013881 21013881 C T KIF17 Silent p.Q646Q 0.29 TCGA-O2-A5IB-01 1 221058035 221058035 G T HLX Missense_Mutation p.G486C 0.50 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-O2-A5IB-01 1 223116250 223116251 - C DISP1 Frame_Shift_Ins p.C31Lfs*2 0.26 TCGA-O2-A5IB-01 1 231488406 231488406 G A SPRTN Missense_Mutation p.G257R 0.45 deleterious(0) probably_damaging(1) TCGA-O2-A5IB-01 1 234041391 234041391 C A SLC35F3 Nonsense_Mutation p.S57* 0.38 TCGA-O2-A5IB-01 1 248263509 248263509 A G OR2L13 Missense_Mutation p.T278A 0.47 deleterious(0.01) benign(0.181) TCGA-O2-A5IB-01 1 248343479 248343480 CC AAA OR2M2 Frame_Shift_Ins p.S64Rfs*48 0.26 TCGA-O2-A5IB-01 1 248343663 248343663 A T OR2M2 Missense_Mutation p.I126F 0.47 deleterious(0) possibly_damaging(0.883) TCGA-O2-A5IB-01 1 248344071 248344071 C A OR2M2 Missense_Mutation p.P262T 0.47 deleterious(0) probably_damaging(0.969) TCGA-O2-A5IB-01 1 248436576 248436576 C A OR2T33 Missense_Mutation p.V181L 0.08 deleterious(0) benign(0.14) TCGA-O2-A5IB-01 1 248738004 248738004 G T OR2T34 Missense_Mutation p.L19I 0.34 deleterious(0.01) probably_damaging(0.991) TCGA-O2-A5IB-01 1 26648769 26648769 C A AIM1L Missense_Mutation p.G721C 0.29 deleterious(0) probably_damaging(1) TCGA-O2-A5IB-01 1 29314373 29314373 G A EPB41 Missense_Mutation p.D142N 0.59 deleterious(0.01) probably_damaging(0.996) TCGA-O2-A5IB-01 1 36933716 36933716 G A CSF3R Silent p.H561H 0.58 TCGA-O2-A5IB-01 1 45476799 45476799 G C HECTD3 Missense_Mutation p.P44R 0.44 deleterious(0) probably_damaging(0.91) TCGA-O2-A5IB-01 1 45501884 45501884 G A ZSWIM5 Missense_Mutation p.A661V 0.41 deleterious(0) unknown(0) TCGA-O2-A5IB-01 1 78340580 78340580 G T FAM73A Missense_Mutation p.R577L 0.62 deleterious(0) probably_damaging(1) TCGA-O2-A5IB-01 1 90048606 90048606 G C LRRC8B Missense_Mutation p.A133P 0.47 deleterious(0) probably_damaging(0.93) TCGA-O2-A5IB-01 1 91981352 91981352 C A CDC7 Missense_Mutation p.R367S 0.34 tolerated(0.38) benign(0.44) TCGA-O2-A5IB-01 20 23017312 23017312 C A SSTR4 3'UTR 0.37 TCGA-O2-A5IB-01 20 29632633 29632633 G T FRG1B Missense_Mutation p.D150Y 0.05 deleterious(0) probably_damaging(0.971) TCGA-O2-A5IB-01 20 31021719 31021719 G C ASXL1 Missense_Mutation p.R573P 0.41 deleterious(0.01) benign(0.146) TCGA-O2-A5IB-01 20 33875460 33875460 C A FAM83C Silent p.T374T 0.31 TCGA-O2-A5IB-01 20 3655334 3655334 C G ADAM33 Silent p.L139L 0.04 TCGA-O2-A5IB-01 20 37534710 37534710 C A PPP1R16B Silent p.P265P 0.40 TCGA-O2-A5IB-01 20 39832369 39832369 G A ZHX3 Silent p.V396V 0.46 TCGA-O2-A5IB-01 20 44806623 44806623 G C CDH22 Missense_Mutation p.A626G 0.53 deleterious(0.01) probably_damaging(0.991) TCGA-O2-A5IB-01 22 23161964 23161964 C G IGLV3-9 Silent p.A19A 0.39 TCGA-O2-A5IB-01 22 24124532 24124532 A G MMP11 Missense_Mutation p.K399E 0.43 deleterious(0.01) possibly_damaging(0.877) TCGA-O2-A5IB-01 22 36003204 36003204 C A MB 3'UTR 0.46 TCGA-O2-A5IB-01 22 41735022 41735022 C T ZC3H7B Nonsense_Mutation p.R215* 0.42 TCGA-O2-A5IB-01 22 46654885 46654885 A G PKDREJ Silent p.T1445T 0.80 TCGA-O2-A5IB-01 22 50900474 50900474 C A SBF1 Missense_Mutation p.G824V 0.86 tolerated(0.14) possibly_damaging(0.809) TCGA-O2-A5IB-01 2 103068613 103068613 G A IL18RAP Missense_Mutation p.G591E 0.37 tolerated(0.29) benign(0.021) TCGA-O2-A5IB-01 2 113260650 113260650 A G TTL Missense_Mutation p.Y256C 0.55 deleterious(0) probably_damaging(0.999) TCGA-O2-A5IB-01 2 114000303 114000303 C T PAX8 Missense_Mutation p.V148M 0.40 tolerated(0.16) possibly_damaging(0.613) TCGA-O2-A5IB-01 2 130877658 130877658 T A POTEF Missense_Mutation p.H144L 0.25 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-O2-A5IB-01 2 131976406 131976406 A T POTEE Missense_Mutation p.H144L 0.13 deleterious_low_confidence(0) possibly_damaging(0.537) TCGA-O2-A5IB-01 2 145161615 145161615 T A ZEB2 Silent p.S225S 0.56 TCGA-O2-A5IB-01 2 167330348 167330348 A G SCN7A Missense_Mutation p.M135T 0.25 deleterious(0) benign(0.432) TCGA-O2-A5IB-01 2 170097742 170097742 G T LRP2 Silent p.V1267V 0.40 TCGA-O2-A5IB-01 2 171260868 171260868 G A MYO3B Missense_Mutation p.E797K 0.36 deleterious(0) probably_damaging(0.982) TCGA-O2-A5IB-01 2 192550410 192550410 A G NABP1 Silent p.P177P 0.38 TCGA-O2-A5IB-01 2 207621713 207621713 C A MDH1B Missense_Mutation p.A108S 0.44 deleterious(0.03) possibly_damaging(0.574) TCGA-O2-A5IB-01 2 222428762 222428762 C A EPHA4 Missense_Mutation p.R171L 0.91 tolerated(0.08) probably_damaging(0.982) TCGA-O2-A5IB-01 2 227662272 227662272 T A IRS1 Missense_Mutation p.S395C 0.93 tolerated(0.08) probably_damaging(0.993) TCGA-O2-A5IB-01 2 33780595 33780595 C A RASGRP3 Intron 0.45 TCGA-O2-A5IB-01 2 43871855 43871855 G A PLEKHH2 Missense_Mutation p.E15K 0.58 tolerated(0.87) possibly_damaging(0.787) TCGA-O2-A5IB-01 2 54081532 54081532 A T GPR75 Missense_Mutation p.F121Y 0.05 deleterious(0) probably_damaging(0.998) TCGA-O2-A5IB-01 2 71780251 71780251 G T DYSF Silent p.G639G 0.49 TCGA-O2-A5IB-01 2 75276842 75276842 A T TACR1 Missense_Mutation p.L314Q 0.46 deleterious(0.02) benign(0.003) TCGA-O2-A5IB-01 2 79314682 79314682 C G REG1B Silent p.L19L 0.54 TCGA-O2-A5IB-01 2 89399461 89399461 G T IGKV1-16 Missense_Mutation p.P81Q 0.45 deleterious(0) probably_damaging(0.972) TCGA-O2-A5IB-01 3 121341605 121341605 G A FBXO40 Silent p.V443V 0.66 TCGA-O2-A5IB-01 3 121342108 121342108 T A FBXO40 Nonsense_Mutation p.L611* 0.23 TCGA-O2-A5IB-01 3 122283309 122283309 C G DTX3L Silent p.L12L 0.40 TCGA-O2-A5IB-01 3 169802621 169802621 C T GPR160 Silent p.L287L 0.31 TCGA-O2-A5IB-01 3 184870630 184870630 G C C3orf70 5'UTR 0.62 TCGA-O2-A5IB-01 3 19479722 19479722 C A KCNH8 Missense_Mutation p.P415Q 0.79 deleterious(0) probably_damaging(0.999) TCGA-O2-A5IB-01 3 21706454 21706454 G A ZNF385D Missense_Mutation p.S30L 0.93 deleterious(0.04) benign(0.114) TCGA-O2-A5IB-01 3 27387597 27387597 A G NEK10 Silent p.A81A 0.96 TCGA-O2-A5IB-01 3 33540175 33540175 T C CLASP2 Missense_Mutation p.Q1498R 0.85 tolerated(0.05) probably_damaging(0.983) TCGA-O2-A5IB-01 3 4725102 4725102 A G ITPR1 Missense_Mutation p.H1050R 0.80 tolerated(0.15) benign(0.075) TCGA-O2-A5IB-01 3 48222273 48222273 G C CDC25A Missense_Mutation p.H163D 0.35 tolerated(0.23) benign(0.175) TCGA-O2-A5IB-01 3 97736548 97736548 C G GABRR3 RNA 0.71 TCGA-O2-A5IB-01 3 97852349 97852349 C A OR5H1 Missense_Mutation p.Q270K 0.35 tolerated(0.48) benign(0.029) TCGA-O2-A5IB-01 4 100065445 100065445 C - ADH4 5'UTR 0.23 TCGA-O2-A5IB-01 4 100512896 100512896 A G MTTP Missense_Mutation p.H236R 0.54 tolerated(0.08) benign(0.098) TCGA-O2-A5IB-01 4 103518741 103518741 C G NFKB1 Nonsense_Mutation p.Y520* 0.45 TCGA-O2-A5IB-01 4 122828700 122828700 A T TRPC3 Silent p.S605S 0.44 TCGA-O2-A5IB-01 4 162577566 162577566 A G FSTL5 Missense_Mutation p.C270R 0.51 deleterious(0) probably_damaging(0.996) TCGA-O2-A5IB-01 4 17616411 17616411 T C MED28 Missense_Mutation p.V45A 0.12 deleterious(0.03) benign(0.129) TCGA-O2-A5IB-01 4 53728767 53728767 C A RASL11B Silent p.R31R 0.53 TCGA-O2-A5IB-01 4 53728768 53728768 C G RASL11B Missense_Mutation p.R32G 0.52 deleterious(0) benign(0.345) TCGA-O2-A5IB-01 4 57181942 57181942 C A KIAA1211 Silent p.A758A 0.26 TCGA-O2-A5IB-01 4 62933889 62933889 T C LPHN3 Intron 0.45 TCGA-O2-A5IB-01 4 71472406 71472406 C T AMBN Missense_Mutation p.P435S 0.39 tolerated(0.15) benign(0.049) TCGA-O2-A5IB-01 4 88379272 88379272 A G NUDT9 3'UTR 0.50 TCGA-O2-A5IB-01 5 122110822 122110822 T G SNX2 Silent p.P8P 0.56 TCGA-O2-A5IB-01 5 127693034 127693034 G T FBN2 Missense_Mutation p.L870I 0.46 tolerated(0.32) benign(0.348) TCGA-O2-A5IB-01 5 131819761 131819761 A G IRF1 Missense_Mutation p.I287T 0.33 tolerated(0.13) benign(0.001) TCGA-O2-A5IB-01 5 131927625 131927625 C G RAD50 Silent p.T564T 0.48 TCGA-O2-A5IB-01 5 139884779 139884779 A G ANKHD1 Missense_Mutation p.I1075V 0.50 benign(0.112) TCGA-O2-A5IB-01 5 140175628 140175628 C A PCDHA2 Nonsense_Mutation p.S360* 0.32 TCGA-O2-A5IB-01 5 140537619 140537619 C T PCDHB17 3'UTR 0.42 TCGA-O2-A5IB-01 5 140746177 140746177 C A PCDHGA5 Silent p.T760T 0.47 TCGA-O2-A5IB-01 5 149582147 149582147 C A SLC6A7 Missense_Mutation p.T323N 0.15 deleterious(0.01) probably_damaging(0.991) TCGA-O2-A5IB-01 5 158158131 158158131 C T EBF1 Silent p.Q357Q 0.71 TCGA-O2-A5IB-01 5 168678416 168678416 G A SLIT3 Missense_Mutation p.A82V 0.73 tolerated(0.1) benign(0.015) TCGA-O2-A5IB-01 5 178391913 178391913 G T ZNF454 Nonsense_Mutation p.G170* 0.71 TCGA-O2-A5IB-01 5 179541490 179541490 C T RASGEF1C Missense_Mutation p.E379K 0.27 tolerated(0.24) benign(0.33) TCGA-O2-A5IB-01 5 35957450 35957450 G T UGT3A1 Missense_Mutation p.N305K 0.29 tolerated(0.3) benign(0.155) TCGA-O2-A5IB-01 5 37183783 37183783 C G C5orf42 Missense_Mutation p.M1500I 0.33 tolerated(0.33) benign(0.002) TCGA-O2-A5IB-01 5 37815928 37815928 G A GDNF Missense_Mutation p.T171I 0.42 deleterious(0) possibly_damaging(0.877) TCGA-O2-A5IB-01 6 100054875 100054875 G C PRDM13 5'UTR 0.48 TCGA-O2-A5IB-01 6 101053549 101053549 C A ASCC3 Missense_Mutation p.G1691V 0.58 deleterious(0) probably_damaging(0.999) TCGA-O2-A5IB-01 6 117735685 117735685 A G ROS1 Intron 0.24 TCGA-O2-A5IB-01 6 119399359 119399359 A G FAM184A Missense_Mutation p.Y36H 0.69 deleterious(0.02) benign(0.258) TCGA-O2-A5IB-01 6 130154711 130154711 C G TMEM244 Missense_Mutation p.E71D 0.28 deleterious(0.02) benign(0.435) TCGA-O2-A5IB-01 6 130763020 130763020 G A TMEM200A Missense_Mutation p.G485R 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-O2-A5IB-01 6 135539028 135539028 A G MYB Silent p.A732A 0.57 TCGA-O2-A5IB-01 6 152265396 152265396 T A ESR1 Silent p.A283A 0.64 TCGA-O2-A5IB-01 6 158910658 158910658 G A TULP4 Missense_Mutation p.D509N 0.31 deleterious(0.04) probably_damaging(0.995) TCGA-O2-A5IB-01 6 159459215 159459215 A C TAGAP Missense_Mutation p.F277V 0.54 deleterious(0) probably_damaging(0.994) TCGA-O2-A5IB-01 6 161139802 161139802 G T PLG Missense_Mutation p.R343L 0.47 tolerated(0.07) possibly_damaging(0.542) TCGA-O2-A5IB-01 6 166827379 166827379 C A RPS6KA2 Missense_Mutation p.R668L 0.63 deleterious(0) probably_damaging(0.999) TCGA-O2-A5IB-01 6 168319414 168319414 G T MLLT4 Splice_Site p.X897_splice 0.60 TCGA-O2-A5IB-01 6 26393125 26393125 G C BTN2A2 Missense_Mutation p.G501A 0.37 deleterious(0.03) probably_damaging(0.998) TCGA-O2-A5IB-01 6 30691925 30691925 G A TUBB Silent p.K362K 0.41 TCGA-O2-A5IB-01 6 31545037 31545037 G A TNF Missense_Mutation p.G142D 0.38 tolerated(0.05) benign(0.122) TCGA-O2-A5IB-01 6 32188970 32188970 A T NOTCH4 Missense_Mutation p.V195D 0.41 deleterious(0.01) probably_damaging(0.94) TCGA-O2-A5IB-01 6 33626806 33626806 G - ITPR3 Frame_Shift_Del p.D181Tfs*3 0.47 TCGA-O2-A5IB-01 6 43038478 43038478 G T KLC4 Missense_Mutation p.A362S 0.30 deleterious(0.02) probably_damaging(0.986) TCGA-O2-A5IB-01 6 43251280 43251280 G - TTBK1 Frame_Shift_Del p.E935Rfs*54 0.16 TCGA-O2-A5IB-01 6 50011483 50011483 A T DEFB112 Missense_Mutation p.S49R 0.31 deleterious(0) benign(0.001) TCGA-O2-A5IB-01 6 50805784 50805784 G T TFAP2B Silent p.T306T 0.56 TCGA-O2-A5IB-01 6 51908453 51908453 G T PKHD1 Missense_Mutation p.P931T 0.28 deleterious(0) probably_damaging(1) TCGA-O2-A5IB-01 6 52943674 52943674 G T FBXO9 Missense_Mutation p.G139C 0.21 tolerated(0.05) possibly_damaging(0.789) TCGA-O2-A5IB-01 6 617710 617710 C A EXOC2 Splice_Site p.X221_splice 0.38 TCGA-O2-A5IB-01 6 656314 656314 G T HUS1B Missense_Mutation p.P211T 0.46 tolerated(0.15) possibly_damaging(0.473) TCGA-O2-A5IB-01 6 84665182 84665182 G A CYB5R4 Splice_Site p.X504_splice 0.19 TCGA-O2-A5IB-01 7 100284347 100284347 C G GIGYF1 Missense_Mutation p.E207Q 0.15 deleterious(0) unknown(0) TCGA-O2-A5IB-01 7 107543924 107543924 C A DLD Missense_Mutation p.A90D 0.42 deleterious(0) probably_damaging(0.955) TCGA-O2-A5IB-01 7 111517147 111517147 C A DOCK4 Missense_Mutation p.K561N 0.38 deleterious(0.03) probably_damaging(0.95) TCGA-O2-A5IB-01 7 129098253 129098253 G C STRIP2 Silent p.V412V 0.26 TCGA-O2-A5IB-01 7 141731581 141731581 T C MGAM Silent p.D524D 0.45 TCGA-O2-A5IB-01 7 150269494 150269494 A G GIMAP4 Silent p.P112P 0.49 TCGA-O2-A5IB-01 7 150716443 150716443 G C ATG9B Missense_Mutation p.P328A 0.29 tolerated(0.08) benign(0.028) TCGA-O2-A5IB-01 7 44120427 44120427 C A POLM Missense_Mutation p.G93C 0.82 deleterious(0.03) benign(0.006) TCGA-O2-A5IB-01 7 88963325 88963325 A T ZNF804B Missense_Mutation p.K343N 0.39 tolerated(0.09) probably_damaging(0.92) TCGA-O2-A5IB-01 8 12952337 12952337 A G DLC1 Missense_Mutation p.Y1153H 0.50 deleterious(0) probably_damaging(0.995) TCGA-O2-A5IB-01 8 12957508 12957508 C A DLC1 Missense_Mutation p.D780Y 0.34 deleterious(0.01) probably_damaging(1) TCGA-O2-A5IB-01 8 139165014 139165014 G T FAM135B Silent p.P568P 0.37 TCGA-O2-A5IB-01 8 145689993 145689993 T C CYHR1 Silent p.A32A 0.52 TCGA-O2-A5IB-01 8 2830663 2830663 A T CSMD1 Missense_Mutation p.S2967T 0.33 probably_damaging(0.997) TCGA-O2-A5IB-01 8 37732557 37732557 C T RAB11FIP1 Nonsense_Mutation p.W366* 0.42 TCGA-O2-A5IB-01 8 75927081 75927081 G C CRISPLD1 Missense_Mutation p.G221R 0.56 deleterious(0) probably_damaging(0.962) TCGA-O2-A5IB-01 9 104432358 104432358 C A GRIN3A Missense_Mutation p.G779V 0.07 deleterious(0) probably_damaging(1) TCGA-O2-A5IB-01 9 116856199 116856199 C T KIF12 Missense_Mutation p.R318H 0.93 tolerated(0.4) benign(0.003) TCGA-O2-A5IB-01 9 132863443 132863443 A C GPR107 Missense_Mutation p.I358L 0.71 deleterious(0.01) benign(0.378) TCGA-O2-A5IB-01 9 136304550 136304550 C T ADAMTS13 Missense_Mutation p.P590L 0.90 deleterious(0) probably_damaging(0.998) TCGA-O2-A5IB-01 9 137772670 137772670 G A FCN2 Translation_Start_Site p.M1? 0.90 deleterious_low_confidence(0.03) benign(0.001) TCGA-O2-A5IB-01 9 140055620 140055620 C A GRIN1 Missense_Mutation p.T458N 0.67 tolerated(0.12) benign(0.002) TCGA-O2-A5IB-01 9 35853739 35853740 - C TMEM8B Frame_Shift_Ins p.R442Pfs*214 0.28 TCGA-O2-A5IB-01 9 70918964 70918964 G T FOXD4L3 Missense_Mutation p.R366I 0.95 deleterious_low_confidence(0.01) benign(0.308) TCGA-O2-A5IB-01 9 8486069 8486069 T A PTPRD Missense_Mutation p.E916D 0.22 tolerated(1) benign(0.002) TCGA-O2-A5IB-01 X 10106974 10106974 C T WWC3 Nonsense_Mutation p.Q1028* 0.58 TCGA-O2-A5IB-01 X 102864105 102864105 T A TCEAL3 Missense_Mutation p.V38E 0.43 tolerated(1) benign(0.048) TCGA-O2-A5IB-01 X 103499066 103499066 G T ESX1 Missense_Mutation p.T92N 0.27 tolerated_low_confidence(0.49) benign(0.001) TCGA-O2-A5IB-01 X 107834809 107834809 C T COL4A5 Missense_Mutation p.P453L 0.41 unknown(0) TCGA-O2-A5IB-01 X 108902620 108902620 A T ACSL4 Silent p.A647A 0.45 TCGA-O2-A5IB-01 X 117043571 117043571 C T KLHL13 Silent p.L356L 0.46 TCGA-O2-A5IB-01 X 117575356 117575356 C A WDR44 Missense_Mutation p.S667Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-O2-A5IB-01 X 118223478 118223478 G A KIAA1210 Missense_Mutation p.S572F 0.04 tolerated(0.66) probably_damaging(0.933) TCGA-O2-A5IB-01 X 122866857 122866857 C G THOC2 Missense_Mutation p.V6L 0.39 tolerated(0.73) benign(0.001) TCGA-O2-A5IB-01 X 123554488 123554488 T A TENM1 Missense_Mutation p.Y1552F 0.44 deleterious(0.01) probably_damaging(0.994) TCGA-O2-A5IB-01 X 12906174 12906174 A G TLR7 Silent p.V849V 0.38 TCGA-O2-A5IB-01 X 135390954 135390954 A G GPR112 Missense_Mutation p.I6M 0.24 tolerated_low_confidence(0.12) benign(0.216) TCGA-O2-A5IB-01 X 141291157 141291157 C A MAGEC2 Missense_Mutation p.C206F 0.68 deleterious(0.03) benign(0) TCGA-O2-A5IB-01 X 142967429 142967429 T C UBE2NL Missense_Mutation p.I76T 0.72 deleterious(0.02) possibly_damaging(0.908) TCGA-O2-A5IB-01 X 147090181 147090181 C T FMR1NB Silent p.S194S 0.24 TCGA-O2-A5IB-01 X 149783092 149783092 G T MTM1 Missense_Mutation p.G88C 0.22 deleterious(0.03) probably_damaging(1) TCGA-O2-A5IB-01 X 151869696 151869696 C A MAGEA6 Missense_Mutation p.P129Q 0.14 deleterious(0.02) possibly_damaging(0.519) TCGA-O2-A5IB-01 X 152815029 152815029 C A ATP2B3 Nonsense_Mutation p.C471* 0.70 TCGA-O2-A5IB-01 X 153001901 153001901 G T ABCD1 Missense_Mutation p.A443S 0.24 tolerated(0.83) benign(0.001) TCGA-O2-A5IB-01 X 153707120 153707120 C A LAGE3 Silent p.P45P 0.13 TCGA-O2-A5IB-01 X 154130345 154130345 A T F8 Silent p.L2032L 0.05 TCGA-O2-A5IB-01 X 21874654 21874654 G C YY2 Missense_Mutation p.D18H 0.42 deleterious(0) possibly_damaging(0.897) TCGA-O2-A5IB-01 X 22129615 22129615 G T PHEX Missense_Mutation p.M370I 0.42 tolerated(0.1) benign(0.193) TCGA-O2-A5IB-01 X 26213133 26213133 G T MAGEB6 Silent p.L390L 0.51 TCGA-O2-A5IB-01 X 30237424 30237424 G A MAGEB2 Missense_Mutation p.E243K 0.41 deleterious(0) probably_damaging(0.981) TCGA-O2-A5IB-01 X 31525410 31525410 G A DMD Missense_Mutation p.S2793F 0.41 possibly_damaging(0.683) TCGA-O2-A5IB-01 X 36007540 36007540 G T CXorf22 Missense_Mutation p.A940S 0.37 tolerated(0.08) benign(0.267) TCGA-O2-A5IB-01 X 37027651 37027651 C A FAM47C Missense_Mutation p.L390I 0.43 tolerated(0.09) probably_damaging(0.953) TCGA-O2-A5IB-01 X 37526698 37526698 G C LANCL3 Silent p.L353L 0.48 TCGA-O2-A5IB-01 X 38150738 38150738 C A RPGR Splice_Site p.X472_splice 0.46 TCGA-O2-A5IB-01 X 38150739 38150739 T A RPGR Splice_Site p.X472_splice 0.46 TCGA-O2-A5IB-01 X 39923625 39923625 G T BCOR Missense_Mutation p.P1156T 0.27 tolerated(0.55) benign(0.119) TCGA-O2-A5IB-01 X 48652308 48652308 G T GATA1 Missense_Mutation p.A327S 0.39 tolerated_low_confidence(0.27) benign(0.014) TCGA-O2-A5IB-01 X 48681913 48681913 C T HDAC6 Missense_Mutation p.S1035L 0.44 tolerated(0.07) benign(0.02) TCGA-O2-A5IB-01 X 49646001 49646001 A - USP27X Frame_Shift_Del p.Y364Ffs*60 0.17 TCGA-O2-A5IB-01 X 53106309 53106309 G T GPR173 Missense_Mutation p.R169L 0.42 tolerated(0.18) possibly_damaging(0.454) TCGA-O2-A5IB-01 X 57318998 57318998 G C FAAH2 Missense_Mutation p.G87A 0.44 tolerated(1) benign(0.001) TCGA-O2-A5IB-01 X 63412138 63412138 G T AMER1 Missense_Mutation p.S343R 0.44 deleterious(0) probably_damaging(0.996) TCGA-O2-A5IB-01 X 77271264 77271264 G T ATP7A Missense_Mutation p.D838Y 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-O2-A5IB-01 X 85906171 85906171 G T DACH2 Splice_Site p.X258_splice 0.47 TCGA-O2-A5IB-01 X 89177163 89177163 G T TGIF2LX Missense_Mutation p.A27S 0.51 tolerated(0.56) probably_damaging(0.968) TCGA-XC-AA0X-01 10 103433295 103433295 C T FBXW4 Silent p.E164E 0.07 TCGA-XC-AA0X-01 10 117278807 117278807 T A ATRNL1 Missense_Mutation p.L1230H 0.16 deleterious(0) probably_damaging(0.996) TCGA-XC-AA0X-01 10 125521612 125521612 C T CPXM2 Missense_Mutation p.G518D 0.08 deleterious(0.01) probably_damaging(0.981) TCGA-XC-AA0X-01 10 46999992 46999992 G T GPRIN2 Missense_Mutation p.S371I 0.13 deleterious(0.02) possibly_damaging(0.51) TCGA-XC-AA0X-01 10 50531612 50531612 G A C10orf71 Missense_Mutation p.G341E 0.16 deleterious(0.01) possibly_damaging(0.869) TCGA-XC-AA0X-01 10 65357820 65357820 C G REEP3 Silent p.V73V 0.11 TCGA-XC-AA0X-01 10 97779071 97779071 G C CC2D2B Missense_Mutation p.D212H 0.13 deleterious(0.03) probably_damaging(1) TCGA-XC-AA0X-01 10 97919481 97919481 G C ZNF518A RNA 0.09 TCGA-XC-AA0X-01 11 108409915 108409915 T C EXPH5 Splice_Site p.X94_splice 0.12 TCGA-XC-AA0X-01 11 113711391 113711391 T C USP28 Missense_Mutation p.R155G 0.10 deleterious(0.01) benign(0.001) TCGA-XC-AA0X-01 11 123624666 123624666 G T OR6X1 Nonsense_Mutation p.C187* 0.15 TCGA-XC-AA0X-01 11 32635648 32635648 G A CCDC73 Missense_Mutation p.P739L 0.11 tolerated(0.47) benign(0.031) TCGA-XC-AA0X-01 11 34162695 34162695 T C NAT10 Silent p.I884I 0.08 TCGA-XC-AA0X-01 11 4790216 4790216 G T OR51F1 Missense_Mutation p.T311K 0.07 tolerated(0.83) benign(0.002) TCGA-XC-AA0X-01 11 487035 487035 G A PTDSS2 Missense_Mutation p.D178N 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-XC-AA0X-01 11 55607132 55607132 C T OR5D16 Missense_Mutation p.A302V 0.15 deleterious(0.02) benign(0.04) TCGA-XC-AA0X-01 11 55889904 55889904 C A OR8H3 Nonsense_Mutation p.S19* 0.14 TCGA-XC-AA0X-01 11 56185586 56185586 G T OR5R1 Silent p.G41G 0.11 TCGA-XC-AA0X-01 11 59609923 59609923 G T GIF Missense_Mutation p.F168L 0.13 tolerated(0.37) benign(0.191) TCGA-XC-AA0X-01 11 59609924 59609924 A T GIF Missense_Mutation p.F168Y 0.13 deleterious(0) possibly_damaging(0.502) TCGA-XC-AA0X-01 11 6048561 6048561 A T OR56A1 Missense_Mutation p.M125K 0.12 deleterious(0) probably_damaging(0.921) TCGA-XC-AA0X-01 11 62489363 62489363 T A HNRNPUL2 Nonsense_Mutation p.K471* 0.14 TCGA-XC-AA0X-01 11 88961069 88961069 G C TYR Missense_Mutation p.G372A 0.12 deleterious(0) probably_damaging(1) TCGA-XC-AA0X-01 12 100042288 100042288 A G FAM71C Silent p.A112A 0.11 TCGA-XC-AA0X-01 12 106632661 106632661 T C CKAP4 3'UTR 0.13 TCGA-XC-AA0X-01 12 110781105 110781105 T C ATP2A2 Missense_Mutation p.L796P 0.08 deleterious(0) probably_damaging(0.998) TCGA-XC-AA0X-01 12 111990178 111990178 C T ATXN2 Silent p.P319P 0.07 TCGA-XC-AA0X-01 12 112191618 112191618 G A ACAD10 Missense_Mutation p.G985S 0.11 deleterious(0.01) benign(0.402) TCGA-XC-AA0X-01 12 11506885 11506885 G T PRB1 Missense_Mutation p.P51Q 0.09 tolerated_low_confidence(0.06) unknown(0) TCGA-XC-AA0X-01 12 117365860 117365860 C G FBXW8 Missense_Mutation p.I117M 0.11 deleterious(0) probably_damaging(0.93) TCGA-XC-AA0X-01 12 124870315 124870315 G AA NCOR2 Frame_Shift_Ins p.L666Ffs*38 0.13 TCGA-XC-AA0X-01 12 1965355 1965355 A T CACNA2D4 Silent p.G683G 0.10 TCGA-XC-AA0X-01 12 51138601 51138601 C G DIP2B Missense_Mutation p.I1570M 0.07 deleterious(0) probably_damaging(0.993) TCGA-XC-AA0X-01 12 62931458 62931458 C A MON2 Nonsense_Mutation p.S697* 0.11 TCGA-XC-AA0X-01 12 85266475 85266475 T C SLC6A15 Missense_Mutation p.Y403C 0.13 deleterious(0) probably_damaging(0.992) TCGA-XC-AA0X-01 12 9262504 9262504 G A A2M Missense_Mutation p.S211L 0.10 deleterious(0.04) benign(0.047) TCGA-XC-AA0X-01 13 101277729 101277729 T C TMTC4 Intron 0.30 TCGA-XC-AA0X-01 13 23808801 23808801 G T SGCG Nonsense_Mutation p.E83* 0.17 TCGA-XC-AA0X-01 13 33226122 33226122 A T PDS5B Missense_Mutation p.Y97F 0.13 deleterious(0) benign(0.419) TCGA-XC-AA0X-01 13 38237718 38237718 G A TRPC4 Missense_Mutation p.S508F 0.07 deleterious(0) probably_damaging(1) TCGA-XC-AA0X-01 13 40175040 40175040 A G LHFP Missense_Mutation p.M105T 0.06 deleterious(0.01) benign(0.089) TCGA-XC-AA0X-01 14 104570792 104570792 G A ASPG Missense_Mutation p.G302E 0.13 deleterious(0) probably_damaging(0.976) TCGA-XC-AA0X-01 14 21553028 21553028 G T ARHGEF40 Missense_Mutation p.K1302N 0.06 deleterious(0) probably_damaging(0.998) TCGA-XC-AA0X-01 14 21553029 21553029 C A ARHGEF40 Missense_Mutation p.L1303I 0.06 tolerated(0.41) benign(0.028) TCGA-XC-AA0X-01 14 23533615 23533615 T C ACIN1 Silent p.T855T 0.17 TCGA-XC-AA0X-01 14 55168875 55168875 A G SAMD4A Missense_Mutation p.K98E 0.09 deleterious(0) probably_damaging(0.997) TCGA-XC-AA0X-01 14 59821919 59821919 G T DAAM1 Missense_Mutation p.G808V 0.07 deleterious(0.01) possibly_damaging(0.636) TCGA-XC-AA0X-01 14 80163992 80163992 C A NRXN3 Missense_Mutation p.F839L 0.21 deleterious(0) benign(0) TCGA-XC-AA0X-01 15 23303855 23303855 C G HERC2P2 RNA 0.12 TCGA-XC-AA0X-01 15 35274925 35274925 G A ZNF770 Silent p.I237I 0.05 TCGA-XC-AA0X-01 15 49127050 49127050 A G SHC4 Silent p.S551S 0.06 TCGA-XC-AA0X-01 15 51514666 51514666 T C CYP19A1 Missense_Mutation p.T170A 0.15 tolerated(0.38) benign(0.002) TCGA-XC-AA0X-01 15 52564011 52564011 A C MYO5C Missense_Mutation p.Y261D 0.17 deleterious(0) probably_damaging(0.991) TCGA-XC-AA0X-01 16 1657290 1657290 C T IFT140 5'UTR 0.07 TCGA-XC-AA0X-01 16 1812885 1812885 C A MAPK8IP3 Silent p.R591R 0.07 TCGA-XC-AA0X-01 16 22142545 22142545 A T VWA3A Missense_Mutation p.S558C 0.19 deleterious(0.02) probably_damaging(0.976) TCGA-XC-AA0X-01 16 29997720 29997720 G A TAOK2 Silent p.Q709Q 0.11 TCGA-XC-AA0X-01 16 30724040 30724040 G T SRCAP Silent p.V678V 0.08 TCGA-XC-AA0X-01 16 51175808 51175808 C A SALL1 Missense_Mutation p.D109Y 0.10 deleterious(0.01) possibly_damaging(0.759) TCGA-XC-AA0X-01 16 56602756 56602756 G A MT4 Missense_Mutation p.C34Y 0.08 deleterious(0) possibly_damaging(0.712) TCGA-XC-AA0X-01 16 76495988 76495988 C A CNTNAP4 Missense_Mutation p.T417N 0.20 tolerated(0.24) possibly_damaging(0.493) TCGA-XC-AA0X-01 16 84118693 84118693 T C MBTPS1 Missense_Mutation p.Y394C 0.09 deleterious(0) probably_damaging(0.997) TCGA-XC-AA0X-01 16 89603374 89603374 G A SPG7 Intron 0.09 TCGA-XC-AA0X-01 17 27959008 27959008 C T SSH2 Silent p.L1041L 0.06 TCGA-XC-AA0X-01 17 5290383 5290383 G A NUP88 Missense_Mutation p.S655F 0.09 deleterious(0) probably_damaging(0.992) TCGA-XC-AA0X-01 17 57288012 57288012 C T SMG8 Silent p.L200L 0.16 TCGA-XC-AA0X-01 17 60023934 60023934 G T MED13 Silent p.L2140L 0.13 TCGA-XC-AA0X-01 17 61949846 61949846 G T CSH2 Intron 0.07 TCGA-XC-AA0X-01 17 7578457 7578457 C A TP53 Missense_Mutation p.R158L 0.24 deleterious(0) probably_damaging(0.986) TCGA-XC-AA0X-01 17 8076676 8076676 G A TMEM107 3'Flank 0.18 TCGA-XC-AA0X-01 17 9632132 9632132 C - USP43 Frame_Shift_Del p.S1068Afs*45 0.21 TCGA-XC-AA0X-01 18 12673478 12673478 G A CEP76 Silent p.I622I 0.08 TCGA-XC-AA0X-01 18 14513726 14513726 G T POTEC Missense_Mutation p.Q490K 0.12 deleterious(0.01) benign(0.262) TCGA-XC-AA0X-01 18 46385879 46385879 G A CTIF Silent p.T584T 0.07 TCGA-XC-AA0X-01 18 61570519 61570519 G T SERPINB2 Missense_Mutation p.G410C 0.08 deleterious(0) probably_damaging(1) TCGA-XC-AA0X-01 18 7567817 7567817 A G PTPRM Translation_Start_Site p.M1? 0.14 deleterious_low_confidence(0.03) unknown(0) TCGA-XC-AA0X-01 19 10610306 10610306 C T KEAP1 Missense_Mutation p.R135H 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-XC-AA0X-01 19 1221306 1221306 G T STK11 Missense_Mutation p.D277Y 0.15 tolerated(0.19) benign(0.067) TCGA-XC-AA0X-01 19 16222500 16222500 A T RAB8A 5'UTR 0.24 TCGA-XC-AA0X-01 19 16884050 16884050 G A NWD1 Missense_Mutation p.A842T 0.29 tolerated(0.07) benign(0.002) TCGA-XC-AA0X-01 19 38229641 38229641 A G ZNF573 Missense_Mutation p.C584R 0.04 deleterious(0) probably_damaging(1) TCGA-XC-AA0X-01 19 41131764 41131764 G A LTBP4 Missense_Mutation p.D1345N 0.53 deleterious(0.01) probably_damaging(0.973) TCGA-XC-AA0X-01 19 43866294 43866294 T C CD177 3'UTR 0.19 TCGA-XC-AA0X-01 19 51986414 51986414 C G CEACAM18 Missense_Mutation p.L334V 0.08 tolerated(0.21) possibly_damaging(0.619) TCGA-XC-AA0X-01 19 52001371 52001371 C A SIGLEC12 Missense_Mutation p.V436L 0.11 deleterious(0.05) benign(0.241) TCGA-XC-AA0X-01 19 53879149 53879149 G T ZNF525 Missense_Mutation p.G48C 0.07 deleterious(0.01) possibly_damaging(0.724) TCGA-XC-AA0X-01 19 55399576 55399576 A G FCAR Silent p.S188S 0.11 TCGA-XC-AA0X-01 19 56572843 56572843 C T NLRP5 Silent p.D1184D 0.12 TCGA-XC-AA0X-01 19 58455341 58455341 C A ZNF256 Missense_Mutation p.D41Y 0.06 deleterious(0.02) probably_damaging(0.991) TCGA-XC-AA0X-01 19 6926504 6926504 C A EMR1 Missense_Mutation p.S705Y 0.09 deleterious(0) probably_damaging(0.995) TCGA-XC-AA0X-01 1 11103528 11103528 C T MASP2 Silent p.R203R 0.21 TCGA-XC-AA0X-01 1 16199523 16199523 C A SPEN Missense_Mutation p.S99Y 0.05 probably_damaging(0.996) TCGA-XC-AA0X-01 1 167032827 167032827 G C GPA33 Missense_Mutation p.A188G 0.18 tolerated(0.34) benign(0.009) TCGA-XC-AA0X-01 1 172634948 172634948 T C FASLG Missense_Mutation p.M213T 0.15 tolerated(0.12) benign(0.005) TCGA-XC-AA0X-01 1 180063398 180063398 C T CEP350 Silent p.L2720L 0.19 TCGA-XC-AA0X-01 1 180063399 180063399 T A CEP350 Missense_Mutation p.L2720Q 0.19 probably_damaging(0.999) TCGA-XC-AA0X-01 1 190067582 190067582 C G BRINP3 Missense_Mutation p.E623Q 0.05 deleterious(0) probably_damaging(0.994) TCGA-XC-AA0X-01 1 201983044 201983044 G T ELF3 Missense_Mutation p.R298L 0.17 deleterious(0) probably_damaging(0.945) TCGA-XC-AA0X-01 1 205053247 205053247 C T TMEM81 Missense_Mutation p.D68N 0.10 tolerated(0.68) probably_damaging(0.991) TCGA-XC-AA0X-01 1 211842608 211842608 C T NEK2 Missense_Mutation p.E278K 0.14 deleterious(0.05) benign(0.007) TCGA-XC-AA0X-01 1 212960971 212960971 T C NSL1 Silent p.E81E 0.15 TCGA-XC-AA0X-01 1 215972325 215972325 G T USH2A Nonsense_Mutation p.C3294* 0.17 TCGA-XC-AA0X-01 1 220344358 220344358 C A RAB3GAP2 Missense_Mutation p.E894D 0.11 tolerated(0.09) benign(0.104) TCGA-XC-AA0X-01 1 236187424 236187424 G A NID1 Nonsense_Mutation p.Q692* 0.23 TCGA-XC-AA0X-01 1 237863744 237863744 A C RYR2 Missense_Mutation p.H3115P 0.20 possibly_damaging(0.515) TCGA-XC-AA0X-01 1 240370996 240370996 G T FMN2 Missense_Mutation p.A962S 0.14 unknown(0) TCGA-XC-AA0X-01 1 24768561 24768561 G C NIPAL3 Missense_Mutation p.R60P 0.11 deleterious(0.01) probably_damaging(0.98) TCGA-XC-AA0X-01 1 247768989 247768989 C T OR2G3 Silent p.F34F 0.05 TCGA-XC-AA0X-01 1 247921522 247921522 G - OR1C1 Frame_Shift_Del p.S64Vfs*19 0.11 TCGA-XC-AA0X-01 1 2520040 2520040 G A FAM213B Missense_Mutation p.G176R 0.05 tolerated(0.08) probably_damaging(1) TCGA-XC-AA0X-01 1 35227244 35227244 C T GJB4 Missense_Mutation p.T130M 0.14 deleterious(0.01) probably_damaging(0.99) TCGA-XC-AA0X-01 1 50610814 50610814 C G ELAVL4 Silent p.L82L 0.19 TCGA-XC-AA0X-01 1 71318443 71318443 G T PTGER3 3'UTR 0.17 TCGA-XC-AA0X-01 1 85537664 85537664 A C WDR63 Missense_Mutation p.K14Q 0.16 tolerated(0.25) benign(0.006) TCGA-XC-AA0X-01 1 97235393 97235393 A G PTBP2 Missense_Mutation p.K84E 0.14 tolerated(0.06) probably_damaging(0.995) TCGA-XC-AA0X-01 20 1424324 1424324 G A NSFL1C 3'UTR 0.23 TCGA-XC-AA0X-01 20 17943424 17943424 T C SNX5 Intron 0.29 TCGA-XC-AA0X-01 20 2572970 2572970 G T TMC2 Missense_Mutation p.M283I 0.34 tolerated(0.23) benign(0.002) TCGA-XC-AA0X-01 20 45133361 45133361 C G ZNF334 Missense_Mutation p.D14H 0.26 deleterious(0) probably_damaging(0.998) TCGA-XC-AA0X-01 21 10920092 10920092 G T TPTE Missense_Mutation p.P388T 0.07 deleterious(0) probably_damaging(0.95) TCGA-XC-AA0X-01 21 34166617 34166617 G T C21orf62 Missense_Mutation p.T39N 0.10 tolerated(0.07) possibly_damaging(0.699) TCGA-XC-AA0X-01 21 45152293 45152293 C T PDXK Intron 0.07 TCGA-XC-AA0X-01 21 46207858 46207858 A T UBE2G2 Missense_Mutation p.F34L 0.22 tolerated(1) possibly_damaging(0.761) TCGA-XC-AA0X-01 22 37333984 37333984 G T CSF2RB Missense_Mutation p.V712F 0.29 deleterious(0) probably_damaging(0.984) TCGA-XC-AA0X-01 22 45970481 45970481 C G FBLN1 Missense_Mutation p.I596M 0.16 deleterious(0.02) benign(0.069) TCGA-XC-AA0X-01 2 100055425 100055425 C A REV1 Missense_Mutation p.R284I 0.27 tolerated(0.07) benign(0.04) TCGA-XC-AA0X-01 2 128753949 128753949 C T SAP130 Missense_Mutation p.A470T 0.20 tolerated_low_confidence(1) benign(0.076) TCGA-XC-AA0X-01 2 159197117 159197117 T C CCDC148 Silent p.T109T 0.14 TCGA-XC-AA0X-01 2 162092084 162092084 T C TANK 3'UTR 0.29 TCGA-XC-AA0X-01 2 179442016 179442016 C A TTN Missense_Mutation p.G23016C 0.06 TCGA-XC-AA0X-01 2 179476365 179476365 G T TTN Missense_Mutation p.A16864D 0.32 TCGA-XC-AA0X-01 2 179597585 179597585 T A TTN Missense_Mutation p.S5440C 0.20 TCGA-XC-AA0X-01 2 202003242 202003242 A T CFLAR Intron 0.15 TCGA-XC-AA0X-01 2 209030497 209030497 C - C2orf80 3'UTR 0.10 TCGA-XC-AA0X-01 2 222307606 222307606 T C EPHA4 Missense_Mutation p.I673V 0.25 deleterious(0.04) benign(0.236) TCGA-XC-AA0X-01 2 233344784 233344784 C A ECEL1 3'UTR 0.21 TCGA-XC-AA0X-01 2 31609317 31609317 G A XDH Silent p.H252H 0.11 TCGA-XC-AA0X-01 2 44079876 44079876 G A ABCG8 Missense_Mutation p.R278K 0.20 tolerated(0.25) benign(0.003) TCGA-XC-AA0X-01 2 61192586 61192586 G T PUS10 Missense_Mutation p.P217T 0.15 deleterious(0.03) benign(0.031) TCGA-XC-AA0X-01 2 64169618 64169618 A G VPS54 Missense_Mutation p.I460T 0.10 tolerated(0.24) benign(0.001) TCGA-XC-AA0X-01 2 84518204 84518204 G A FUNDC2P2 RNA 0.23 TCGA-XC-AA0X-01 2 97427267 97427267 G A CNNM4 Silent p.G177G 0.19 TCGA-XC-AA0X-01 3 10916719 10916719 G T SLC6A11 Missense_Mutation p.G277V 0.12 deleterious(0) probably_damaging(0.977) TCGA-XC-AA0X-01 3 127785889 127785889 C A SEC61A1 Silent p.P290P 0.19 TCGA-XC-AA0X-01 3 141889300 141889300 C T GK5 Silent p.R436R 0.12 TCGA-XC-AA0X-01 3 156175270 156175270 A C KCNAB1 Missense_Mutation p.Y129S 0.40 deleterious(0) probably_damaging(0.995) TCGA-XC-AA0X-01 3 16419576 16419576 C T RFTN1 Missense_Mutation p.V159I 0.18 deleterious(0.02) benign(0.197) TCGA-XC-AA0X-01 3 164905735 164905735 T A SLITRK3 Missense_Mutation p.T962S 0.03 deleterious(0.01) probably_damaging(0.985) TCGA-XC-AA0X-01 3 167035282 167035282 T A ZBBX Missense_Mutation p.S363C 0.16 deleterious(0.01) probably_damaging(0.957) TCGA-XC-AA0X-01 3 167164195 167164195 T C SERPINI2 Missense_Mutation p.K376E 0.15 deleterious(0) probably_damaging(0.969) TCGA-XC-AA0X-01 3 173998663 173998663 C T NLGN1 Missense_Mutation p.A681V 0.11 deleterious(0) probably_damaging(0.987) TCGA-XC-AA0X-01 3 180349356 180349356 A G CCDC39 Silent p.S633S 0.17 TCGA-XC-AA0X-01 3 185165677 185165677 G T MAP3K13 Missense_Mutation p.A318S 0.17 tolerated(0.05) probably_damaging(0.981) TCGA-XC-AA0X-01 3 185318638 185318638 C T SENP2 Silent p.S148S 0.13 TCGA-XC-AA0X-01 3 196674848 196674848 G A PIGZ Missense_Mutation p.A307V 0.04 deleterious(0.05) probably_damaging(0.951) TCGA-XC-AA0X-01 3 49699916 49699916 C T BSN Silent p.D3546D 0.17 TCGA-XC-AA0X-01 3 62535588 62535588 G C CADPS Missense_Mutation p.I652M 0.20 tolerated(0.06) unknown(0) TCGA-XC-AA0X-01 3 67054421 67054421 A C KBTBD8 Silent p.R344R 0.23 TCGA-XC-AA0X-01 3 74548823 74548823 A C CNTN3 Missense_Mutation p.S57A 0.04 tolerated(0.57) benign(0.004) TCGA-XC-AA0X-01 4 114257044 114257044 G T ANK2 Missense_Mutation p.R1141L 0.16 probably_damaging(0.989) TCGA-XC-AA0X-01 4 114276370 114276370 A G ANK2 Missense_Mutation p.D2199G 0.12 benign(0.002) TCGA-XC-AA0X-01 4 120440205 120440205 T - PDE5A Frame_Shift_Del p.Q666Sfs*25 0.18 TCGA-XC-AA0X-01 4 126336822 126336822 G A FAT4 Missense_Mutation p.G2235D 0.07 probably_damaging(0.987) TCGA-XC-AA0X-01 4 129043155 129043155 A C LARP1B Missense_Mutation p.N446H 0.10 deleterious(0) probably_damaging(0.98) TCGA-XC-AA0X-01 4 159618851 159618851 G - ETFDH Frame_Shift_Del 0.09 TCGA-XC-AA0X-01 4 160259535 160259535 A G RAPGEF2 Silent p.A575A 0.15 TCGA-XC-AA0X-01 4 40892502 40892502 C T APBB2 Missense_Mutation p.D470N 0.12 deleterious(0.01) probably_damaging(0.954) TCGA-XC-AA0X-01 4 5733346 5733346 C A EVC Silent p.L193L 0.11 TCGA-XC-AA0X-01 4 71346810 71346810 C A MUC7 Missense_Mutation p.P117T 0.15 tolerated(0.76) benign(0.261) TCGA-XC-AA0X-01 4 88584068 88584068 G A DMP1 Missense_Mutation p.D380N 0.08 tolerated(0.06) benign(0.117) TCGA-XC-AA0X-01 5 133304288 133304288 T A C5orf15 5'UTR 0.31 TCGA-XC-AA0X-01 5 13700779 13700779 G T DNAH5 Missense_Mutation p.P4565T 0.06 possibly_damaging(0.876) TCGA-XC-AA0X-01 5 140307186 140307186 G T PCDHAC1 Missense_Mutation p.V237L 0.08 tolerated(0.09) benign(0.197) TCGA-XC-AA0X-01 5 148712361 148712361 G A AFAP1L1 Silent p.V693V 0.33 TCGA-XC-AA0X-01 5 149286887 149286887 G A PDE6A Silent p.A351A 0.09 TCGA-XC-AA0X-01 5 90107098 90107098 A G GPR98 Missense_Mutation p.I5341V 0.21 benign(0.001) TCGA-XC-AA0X-01 5 9044505 9044505 C A SEMA5A Missense_Mutation p.D1029Y 0.19 deleterious(0.04) probably_damaging(0.947) TCGA-XC-AA0X-01 5 9044506 9044506 G T SEMA5A Nonsense_Mutation p.Y1028* 0.19 TCGA-XC-AA0X-01 5 94224582 94224582 A T MCTP1 Splice_Site p.X645_splice 0.26 TCGA-XC-AA0X-01 6 119341243 119341243 T A FAM184A Missense_Mutation p.N411I 0.29 deleterious(0) benign(0.336) TCGA-XC-AA0X-01 6 13977623 13977623 G A RNF182 Silent p.L91L 0.23 TCGA-XC-AA0X-01 6 151671718 151671718 G T AKAP12 Missense_Mutation p.G731V 0.05 tolerated(0.08) benign(0.048) TCGA-XC-AA0X-01 6 165848739 165848739 C T PDE10A Missense_Mutation p.E175K 0.15 tolerated(0.08) benign(0.336) TCGA-XC-AA0X-01 6 51890188 51890188 C T PKHD1 Missense_Mutation p.G1474R 0.08 tolerated(0.07) probably_damaging(0.983) TCGA-XC-AA0X-01 6 83898381 83898381 G C PGM3 Missense_Mutation p.A142G 0.17 tolerated(0.34) benign(0.006) TCGA-XC-AA0X-01 7 121695046 121695046 G T PTPRZ1 Nonsense_Mutation p.E2145* 0.08 TCGA-XC-AA0X-01 7 142723694 142723694 C T OR9A2 Missense_Mutation p.D176N 0.10 deleterious(0) probably_damaging(0.936) TCGA-XC-AA0X-01 7 2976835 2976835 A G CARD11 Missense_Mutation p.Y393H 0.22 tolerated(0.06) possibly_damaging(0.862) TCGA-XC-AA0X-01 7 30825433 30825433 A C FAM188B Missense_Mutation p.K163T 0.09 deleterious(0.01) benign(0.13) TCGA-XC-AA0X-01 7 34006133 34006133 G A BMPER Nonsense_Mutation p.W121* 0.24 TCGA-XC-AA0X-01 7 40789081 40789081 A T SUGCT Nonsense_Mutation p.K413* 0.07 TCGA-XC-AA0X-01 7 43917791 43917791 C T URGCP Missense_Mutation p.S424N 0.18 tolerated(0.38) benign(0.005) TCGA-XC-AA0X-01 7 83643628 83643628 T C SEMA3A Missense_Mutation p.D236G 0.08 tolerated(0.09) probably_damaging(0.981) TCGA-XC-AA0X-01 7 95157380 95157380 G T ASB4 Missense_Mutation p.R248L 0.12 tolerated(0.06) possibly_damaging(0.61) TCGA-XC-AA0X-01 7 98515176 98515176 G T TRRAP Silent p.V832V 0.24 TCGA-XC-AA0X-01 8 117866549 117866560 TCTCTTTCCACA - RAD21 In_Frame_Del p.M362_E365del 0.12 TCGA-XC-AA0X-01 8 38250498 38250498 A G LETM2 Silent p.R115R 0.17 TCGA-XC-AA0X-01 8 42302174 42302174 C T SLC20A2 Silent p.R240R 0.28 TCGA-XC-AA0X-01 8 87656093 87656093 C T CNGB3 Missense_Mutation p.R355Q 0.16 deleterious(0.02) possibly_damaging(0.805) TCGA-XC-AA0X-01 8 97797481 97797481 C T CPQ Missense_Mutation p.S119L 0.11 tolerated(0.1) possibly_damaging(0.477) TCGA-XC-AA0X-01 8 98289497 98289497 C G TSPYL5 Silent p.G192G 0.17 TCGA-XC-AA0X-01 9 104324635 104324635 C T RNF20 Silent p.R953R 0.12 TCGA-XC-AA0X-01 9 104324636 104324636 C T RNF20 Nonsense_Mutation p.Q954* 0.12 TCGA-XC-AA0X-01 9 120475528 120475528 C G TLR4 Missense_Mutation p.S374R 0.08 tolerated(0.08) benign(0.091) TCGA-XC-AA0X-01 9 123605018 123605018 T C PSMD5 Missense_Mutation p.H57R 0.15 tolerated(0.17) benign(0.089) TCGA-XC-AA0X-01 9 32633169 32633169 C A TAF1L Missense_Mutation p.Q803H 0.24 deleterious(0) benign(0.41) TCGA-XC-AA0X-01 9 35698062 35698062 C T TLN1 Silent p.K2493K 0.20 TCGA-XC-AA0X-01 9 40774616 40774616 G A ZNF658 Missense_Mutation p.S220F 0.09 tolerated(0.85) benign(0) TCGA-XC-AA0X-01 9 90502260 90502260 A T SPATA31E1 Missense_Mutation p.H953L 0.17 tolerated(0.11) benign(0.122) TCGA-XC-AA0X-01 X 100117182 100117182 T G NOX1 Missense_Mutation p.K261T 0.09 tolerated(0.1) benign(0.024) TCGA-XC-AA0X-01 X 118723509 118723509 C T NKRF Missense_Mutation p.E642K 0.11 deleterious(0.01) probably_damaging(0.956) TCGA-XC-AA0X-01 X 119438318 119438318 G T TMEM255A Silent p.S29S 0.17 TCGA-XC-AA0X-01 X 119760319 119760319 C G C1GALT1C1 Missense_Mutation p.E235Q 0.12 deleterious(0.04) probably_damaging(1) TCGA-XC-AA0X-01 X 123805600 123805600 C A TENM1 Silent p.G367G 0.11 TCGA-XC-AA0X-01 X 123805601 123805601 C A TENM1 Missense_Mutation p.G367V 0.11 tolerated_low_confidence(0.53) benign(0.097) TCGA-XC-AA0X-01 X 125685611 125685611 G T DCAF12L1 Silent p.S327S 0.12 TCGA-XC-AA0X-01 X 128724382 128724382 C A OCRL 3'UTR 0.18 TCGA-XC-AA0X-01 X 129058833 129058833 C T UTP14A Missense_Mutation p.H471Y 0.11 deleterious(0.02) possibly_damaging(0.507) TCGA-XC-AA0X-01 X 140993792 140993792 C A MAGEC1 Missense_Mutation p.P201H 0.07 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-XC-AA0X-01 X 142967432 142967432 A T UBE2NL Missense_Mutation p.Y77F 0.11 tolerated(0.07) possibly_damaging(0.469) TCGA-XC-AA0X-01 X 147743790 147743790 T C AFF2 Missense_Mutation p.M181T 0.10 tolerated(0.64) benign(0.001) TCGA-XC-AA0X-01 X 154157240 154157240 T C F8 Missense_Mutation p.T1609A 0.06 tolerated(0.22) benign(0.08) TCGA-XC-AA0X-01 X 17819949 17819949 G A RAI2 Missense_Mutation p.P61L 0.10 deleterious(0) possibly_damaging(0.851) TCGA-XC-AA0X-01 X 19482441 19482441 T A MAP3K15 Missense_Mutation p.R203S 0.23 deleterious(0.03) benign(0.402) TCGA-XC-AA0X-01 X 27839865 27839865 C A MAGEB10 Missense_Mutation p.Q148K 0.11 deleterious(0.01) benign(0.268) TCGA-XC-AA0X-01 X 29938186 29938186 C A IL1RAPL1 Missense_Mutation p.H344Q 0.19 tolerated(1) benign(0.007) TCGA-XC-AA0X-01 X 29973282 29973282 C A IL1RAPL1 Missense_Mutation p.P479Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-XC-AA0X-01 X 48419041 48419041 C A TBC1D25 Missense_Mutation p.P582H 0.15 deleterious(0.02) possibly_damaging(0.552) TCGA-XC-AA0X-01 X 50659574 50659574 G A BMP15 Silent p.E382E 0.13 TCGA-XC-AA0X-01 X 53575130 53575130 G A HUWE1 Silent p.S3380S 0.15 TCGA-XC-AA0X-01 X 54044145 54044145 T A PHF8 Missense_Mutation p.M171L 0.20 tolerated(1) probably_damaging(0.913) TCGA-XC-AA0X-01 X 54044146 54044146 G T PHF8 Silent p.G170G 0.20 TCGA-XC-AA0X-01 X 70775881 70775881 C T OGT Silent p.A334A 0.11 TCGA-XC-AA0X-01 X 71426634 71426634 G C ERCC6L Silent p.A661A 0.19 TCGA-XC-AA0X-01 X 73065323 73065323 T C XIST RNA 0.18 TCGA-XC-AA0X-01 X 73524456 73524456 G T ZCCHC13 Missense_Mutation p.G119W 0.07 deleterious(0) probably_damaging(0.999) TCGA-XC-AA0X-01 X 77381502 77381502 C A PGK1 3'UTR 0.16 TCGA-XC-AA0X-01 X 79698739 79698739 G A FAM46D Missense_Mutation p.G234D 0.07 deleterious(0) probably_damaging(1)